sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3N-A9WB-06 10 107012568 107012568 C T SORCS3 Silent p.A1047A 0.49 TCGA-3N-A9WB-06 10 120354453 120354453 G C PRLHR Missense_Mutation p.L102V 0.44 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 10 122334682 122334682 C T PPAPDC1A Missense_Mutation p.A162V 0.49 deleterious(0.03) possibly_damaging(0.786) TCGA-3N-A9WB-06 10 124345791 124345791 G A DMBT1 Missense_Mutation p.D559N 0.40 deleterious(0.01) unknown(0) TCGA-3N-A9WB-06 10 1262983 1262983 G A ADARB2 Silent p.V530V 0.50 TCGA-3N-A9WB-06 10 129905609 129905609 C G MKI67 Missense_Mutation p.D1499H 0.47 deleterious(0.02) probably_damaging(0.958) TCGA-3N-A9WB-06 10 37508366 37508366 G A ANKRD30A Silent p.T1186T 0.30 TCGA-3N-A9WB-06 10 61004963 61004963 G A PHYHIPL Missense_Mutation p.G248E 0.48 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 10 74098019 74098019 G A DNAJB12 Silent p.L292L 0.52 TCGA-3N-A9WB-06 10 79581767 79581767 C T DLG5 Silent p.P825P 0.39 TCGA-3N-A9WB-06 10 81706400 81706400 G A SFTPD Missense_Mutation p.L6F 0.50 tolerated(0.35) unknown(0) TCGA-3N-A9WB-06 11 101762282 101762282 G A ANGPTL5 Missense_Mutation p.P299S 0.31 tolerated(0.1) benign(0.371) TCGA-3N-A9WB-06 11 108263964 108263964 C T C11orf65 Silent p.L234L 0.38 TCGA-3N-A9WB-06 11 123901121 123901121 G A OR10G8 Silent p.R264R 0.53 TCGA-3N-A9WB-06 11 47330157 47330157 T C MADD Silent p.L1259L 0.45 TCGA-3N-A9WB-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-3N-A9WB-06 11 78381447 78381447 G A TENM4 Silent p.P1981P 0.43 TCGA-3N-A9WB-06 12 100491265 100491265 T A UHRF1BP1L Missense_Mutation p.I183L 0.39 tolerated(0.28) benign(0.349) TCGA-3N-A9WB-06 12 111956215 111956215 G A ATXN2 Missense_Mutation p.P495S 0.56 probably_damaging(0.999) TCGA-3N-A9WB-06 12 122286944 122286944 C T HPD Missense_Mutation p.G186E 0.40 deleterious(0) possibly_damaging(0.856) TCGA-3N-A9WB-06 12 122717445 122717445 G A VPS33A Missense_Mutation p.S504F 0.33 tolerated(0.08) benign(0.024) TCGA-3N-A9WB-06 12 130926832 130926832 C T RIMBP2 Silent p.K338K 0.41 TCGA-3N-A9WB-06 12 2788673 2788673 C T CACNA1C Missense_Mutation p.P1767S 0.42 tolerated(0.15) benign(0.115) TCGA-3N-A9WB-06 12 48372107 48372107 A C COL2A1 Silent p.G990G 0.33 TCGA-3N-A9WB-06 12 660158 660158 G A B4GALNT3 Silent p.V356V 0.23 TCGA-3N-A9WB-06 12 70048726 70048726 G A BEST3 Silent p.I656I 0.43 TCGA-3N-A9WB-06 12 7527907 7527907 G A CD163L1 Missense_Mutation p.H991Y 0.42 deleterious(0.02) possibly_damaging(0.845) TCGA-3N-A9WB-06 12 75441996 75441996 C T KCNC2 Missense_Mutation p.E573K 0.40 tolerated_low_confidence(0.87) benign(0.027) TCGA-3N-A9WB-06 12 81688661 81688661 C T PPFIA2 Missense_Mutation p.E960K 0.47 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WB-06 13 103506138 103506138 C T BIVM-ERCC5 Missense_Mutation p.S525F 0.24 tolerated(0.06) possibly_damaging(0.899) TCGA-3N-A9WB-06 13 108959195 108959195 G A TNFSF13B Missense_Mutation p.G256E 0.41 deleterious(0.04) probably_damaging(0.969) TCGA-3N-A9WB-06 13 110847462 110847462 C T COL4A1 Missense_Mutation p.G430E 0.50 unknown(0) TCGA-3N-A9WB-06 13 25029167 25029167 G A PARP4 Nonsense_Mutation p.Q916* 0.45 TCGA-3N-A9WB-06 13 33628012 33628012 G A KL Missense_Mutation p.D310N 0.47 tolerated(0.67) benign(0.005) TCGA-3N-A9WB-06 13 52990203 52990203 G A VPS36 Missense_Mutation p.S339L 0.46 deleterious(0.01) possibly_damaging(0.516) TCGA-3N-A9WB-06 14 101500166 101500166 C T MIR495 RNA 0.35 TCGA-3N-A9WB-06 14 19563534 19563534 C T POTEG Missense_Mutation p.H350Y 0.26 tolerated(0.45) benign(0.241) TCGA-3N-A9WB-06 14 19566060 19566060 C T POTEG Silent p.V368V 0.15 TCGA-3N-A9WB-06 14 20482441 20482441 G A OR4K14 Silent p.N304N 0.43 TCGA-3N-A9WB-06 14 22192345 22192345 G A TRAV3 Silent p.V40V 0.38 TCGA-3N-A9WB-06 14 88945618 88945618 G A PTPN21 Silent p.F719F 0.68 TCGA-3N-A9WB-06 14 96706838 96706838 C T BDKRB2 Missense_Mutation p.T58I 0.50 tolerated(0.09) benign(0.011) TCGA-3N-A9WB-06 14 99697747 99697747 G A BCL11B Missense_Mutation p.S192L 0.52 tolerated_low_confidence(0.4) benign(0.001) TCGA-3N-A9WB-06 15 41222868 41222868 G A DLL4 Missense_Mutation p.D128N 0.52 tolerated(0.17) benign(0.002) TCGA-3N-A9WB-06 15 42028514 42028514 T A MGA Missense_Mutation p.I1351N 0.40 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 15 75941993 75941993 A T SNX33 Missense_Mutation p.N184Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WB-06 15 81224358 81224358 G A KIAA1199 Missense_Mutation p.G924D 0.34 tolerated(0.73) benign(0.001) TCGA-3N-A9WB-06 15 85343201 85343201 C T ZNF592 Missense_Mutation p.S1089F 0.45 tolerated(0.07) possibly_damaging(0.514) TCGA-3N-A9WB-06 15 85660984 85660984 C A PDE8A Missense_Mutation p.H550N 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WB-06 16 21747671 21747671 G A OTOA Silent p.R797R 0.35 TCGA-3N-A9WB-06 16 31473937 31473937 C T ARMC5 Missense_Mutation p.R357C 0.32 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 16 61689476 61689476 C T CDH8 Missense_Mutation p.D602N 0.30 tolerated(0.26) possibly_damaging(0.516) TCGA-3N-A9WB-06 16 75276581 75276581 G A BCAR1 Silent p.P186P 0.34 TCGA-3N-A9WB-06 16 84065513 84065513 G A SLC38A8 Silent p.L197L 0.33 TCGA-3N-A9WB-06 17 1340417 1340417 G A CRK Nonsense_Mutation p.Q92* 0.85 TCGA-3N-A9WB-06 17 36485676 36485676 C T GPR179 Missense_Mutation p.G1259D 0.56 tolerated(0.09) benign(0.114) TCGA-3N-A9WB-06 17 39775769 39775769 G A KRT17 3'UTR 0.53 TCGA-3N-A9WB-06 17 42274328 42274328 G A ATXN7L3 Silent p.D141D 0.63 TCGA-3N-A9WB-06 17 42286887 42286887 G A UBTF Nonsense_Mutation p.Q580* 0.30 TCGA-3N-A9WB-06 17 729215 729215 C T NXN Missense_Mutation p.R155Q 0.77 tolerated(0.21) benign(0.121) TCGA-3N-A9WB-06 17 73663398 73663398 G A SAP30BP 5'UTR 0.50 TCGA-3N-A9WB-06 17 74015728 74015728 C T EVPL Missense_Mutation p.E340K 0.19 tolerated(0.51) benign(0.333) TCGA-3N-A9WB-06 17 74015729 74015729 C T EVPL Silent p.Q339Q 0.20 TCGA-3N-A9WB-06 17 76528743 76528743 C T DNAH17 Missense_Mutation p.E979K 0.42 benign(0.001) TCGA-3N-A9WB-06 17 8135062 8135062 G A CTC1 Silent p.L819L 0.85 TCGA-3N-A9WB-06 18 21033255 21033255 C T RIOK3 5'UTR 0.30 TCGA-3N-A9WB-06 18 28588437 28588437 C T DSC3 Missense_Mutation p.E440K 0.37 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 18 34238118 34238118 C T FHOD3 Missense_Mutation p.S426F 0.43 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-3N-A9WB-06 18 50741963 50741963 C T DCC Missense_Mutation p.S636L 0.45 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WB-06 19 16060353 16060353 T C OR10H4 Missense_Mutation p.F179S 0.38 deleterious(0.01) benign(0.005) TCGA-3N-A9WB-06 19 36159548 36159548 G A UPK1A Missense_Mutation p.V93I 0.53 tolerated(0.23) benign(0.015) TCGA-3N-A9WB-06 19 37871227 37871227 A G ZNF527 Missense_Mutation p.K70R 0.56 tolerated(0.1) benign(0.073) TCGA-3N-A9WB-06 19 43920550 43920550 G A TEX101 Silent p.T96T 0.42 TCGA-3N-A9WB-06 19 4512088 4512088 G A PLIN4 Silent p.T614T 0.31 TCGA-3N-A9WB-06 19 49340578 49340578 G A PLEKHA4 Silent p.L770L 0.38 TCGA-3N-A9WB-06 19 53762792 53762792 C T VN1R2 Silent p.F388F 0.36 TCGA-3N-A9WB-06 19 7676034 7676034 C T CAMSAP3 Missense_Mutation p.S395F 0.47 deleterious(0) possibly_damaging(0.851) TCGA-3N-A9WB-06 1 103345306 103345306 C T COL11A1 Missense_Mutation p.G1736E 0.30 unknown(0) TCGA-3N-A9WB-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.80 deleterious(0.01) benign(0.045) TCGA-3N-A9WB-06 1 12835294 12835294 C T PRAMEF12 Missense_Mutation p.P95L 0.35 tolerated(0.09) probably_damaging(0.991) TCGA-3N-A9WB-06 1 142713477 142713477 T C RP11-417J8.6 RNA 0.27 TCGA-3N-A9WB-06 1 145075797 145075797 C T PDE4DIP Silent p.A22A 0.28 TCGA-3N-A9WB-06 1 152281091 152281091 G A FLG Missense_Mutation p.L2091F 0.45 possibly_damaging(0.587) TCGA-3N-A9WB-06 1 152732081 152732081 A G KPRP Missense_Mutation p.Q6R 0.51 tolerated(0.07) possibly_damaging(0.649) TCGA-3N-A9WB-06 1 153955047 153955047 G A RAB13 Silent p.F148F 0.40 TCGA-3N-A9WB-06 1 154296960 154296960 G T AQP10 3'UTR 0.28 TCGA-3N-A9WB-06 1 157485452 157485452 G A FCRL5 3'UTR 0.39 TCGA-3N-A9WB-06 1 159863023 159863023 G A CCDC19 Missense_Mutation p.R26W 0.49 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 1 160654772 160654772 G A CD48 Missense_Mutation p.S97F 0.18 tolerated(0.38) benign(0.021) TCGA-3N-A9WB-06 1 171086251 171086251 G A FMO3 Missense_Mutation p.S423N 0.39 deleterious(0.03) benign(0.236) TCGA-3N-A9WB-06 1 179414245 179414245 G A AXDND1 Silent p.G568G 0.34 TCGA-3N-A9WB-06 1 179414246 179414246 G A AXDND1 Missense_Mutation p.E569K 0.35 tolerated(0.65) benign(0.013) TCGA-3N-A9WB-06 1 186648228 186648228 G A PTGS2 Missense_Mutation p.P92L 0.45 deleterious(0.01) benign(0.088) TCGA-3N-A9WB-06 1 196397353 196397353 C T KCNT2 Missense_Mutation p.G289E 0.41 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WB-06 1 200969055 200969055 G A KIF21B Nonsense_Mutation p.Q575* 0.43 TCGA-3N-A9WB-06 1 201008973 201008973 G A CACNA1S Missense_Mutation p.P1870S 0.43 deleterious_low_confidence(0.05) benign(0.001) TCGA-3N-A9WB-06 1 201860677 201860677 C T SHISA4 Silent p.P176P 0.37 TCGA-3N-A9WB-06 1 204587731 204587731 G A LRRN2 Nonsense_Mutation p.R464* 0.42 TCGA-3N-A9WB-06 1 207789937 207789937 C T CR1 Missense_Mutation p.P2227S 0.36 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WB-06 1 228525063 228525063 G A OBSCN Silent p.E6550E 0.44 TCGA-3N-A9WB-06 1 234596074 234596074 G A TARBP1 Silent p.L490L 0.45 TCGA-3N-A9WB-06 1 247065948 247065948 G A AHCTF1 Silent p.T341T 0.44 TCGA-3N-A9WB-06 1 248129595 248129595 G A OR2AK2 Missense_Mutation p.G321E 0.36 deleterious(0.02) possibly_damaging(0.743) TCGA-3N-A9WB-06 1 26650779 26650779 C T AIM1L Nonsense_Mutation p.W660* 0.39 TCGA-3N-A9WB-06 1 29016615 29016615 G A GMEB1 Missense_Mutation p.R53K 0.37 tolerated_low_confidence(0.68) possibly_damaging(0.745) TCGA-3N-A9WB-06 1 37319301 37319301 C T GRIK3 Missense_Mutation p.G376E 0.32 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 1 68912501 68912501 C T RPE65 Missense_Mutation p.G46E 0.37 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 1 87040264 87040264 G A CLCA4 Missense_Mutation p.M503I 0.38 tolerated(0.29) benign(0.19) TCGA-3N-A9WB-06 20 30898218 30898218 C T KIF3B Missense_Mutation p.S213L 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 20 3671988 3671988 G A SIGLEC1 Silent p.L1530L 0.81 TCGA-3N-A9WB-06 20 48522865 48522865 T G SPATA2 Missense_Mutation p.D285A 0.62 deleterious(0.01) benign(0.423) TCGA-3N-A9WB-06 20 56089783 56089783 C T CTCFL Missense_Mutation p.E399K 0.59 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WB-06 20 9546725 9546725 G A PAK7 Missense_Mutation p.R433W 0.89 deleterious(0) probably_damaging(0.99) TCGA-3N-A9WB-06 21 11038962 11038962 C T BAGE2 RNA 0.06 TCGA-3N-A9WB-06 21 14982822 14982822 G A POTED Missense_Mutation p.M91I 0.52 deleterious_low_confidence(0.01) benign(0.04) TCGA-3N-A9WB-06 21 45564888 45564888 G A C21orf33 3'UTR 0.60 TCGA-3N-A9WB-06 21 48069522 48069522 C T PRMT2 Silent p.H175H 0.45 TCGA-3N-A9WB-06 22 29440765 29440765 C T ZNRF3 Intron 0.32 TCGA-3N-A9WB-06 22 30209462 30209462 G A ASCC2 Missense_Mutation p.P264S 0.52 deleterious(0.01) probably_damaging(0.948) TCGA-3N-A9WB-06 22 38121590 38121590 C T TRIOBP Silent p.P1009P 0.36 TCGA-3N-A9WB-06 2 100181978 100181978 C T AFF3 Silent p.T1055T 0.39 TCGA-3N-A9WB-06 2 103039733 103039733 G A IL18RAP 5'UTR 0.44 TCGA-3N-A9WB-06 2 109400289 109400289 G C RANBP2 Missense_Mutation p.E3203Q 0.30 tolerated(0.1) probably_damaging(0.994) TCGA-3N-A9WB-06 2 152527668 152527668 T C NEB Missense_Mutation p.K1459E 0.08 possibly_damaging(0.696) TCGA-3N-A9WB-06 2 157183246 157183246 G A NR4A2 Missense_Mutation p.L449F 0.43 deleterious(0.02) probably_damaging(0.959) TCGA-3N-A9WB-06 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.41 possibly_damaging(0.856) TCGA-3N-A9WB-06 2 178364403 178364403 C T AGPS Missense_Mutation p.R474C 0.37 deleterious(0.02) probably_damaging(0.935) TCGA-3N-A9WB-06 2 178540244 178540244 G A PDE11A Missense_Mutation p.S809L 0.57 tolerated(0.05) probably_damaging(0.966) TCGA-3N-A9WB-06 2 179393770 179393770 C T TTN Missense_Mutation p.V35570I 0.44 TCGA-3N-A9WB-06 2 179400448 179400448 C T TTN Missense_Mutation p.G33632R 0.42 TCGA-3N-A9WB-06 2 179582336 179582336 G A TTN Missense_Mutation p.T8422I 0.54 TCGA-3N-A9WB-06 2 191827724 191827724 C T GLS 3'UTR 0.37 TCGA-3N-A9WB-06 2 207615786 207615786 C T MDH1B Silent p.V308V 0.51 TCGA-3N-A9WB-06 2 208693073 208693073 G A PLEKHM3 Silent p.T752T 0.40 TCGA-3N-A9WB-06 2 212248617 212248617 C T ERBB4 Missense_Mutation p.G1217E 0.41 tolerated(1) benign(0) TCGA-3N-A9WB-06 2 227924234 227924234 C T COL4A4 Missense_Mutation p.G757E 0.39 probably_damaging(0.972) TCGA-3N-A9WB-06 2 233245400 233245400 G A ALPP Missense_Mutation p.M311I 0.28 tolerated(0.11) benign(0.005) TCGA-3N-A9WB-06 2 234465611 234465611 C T USP40 Missense_Mutation p.E158K 0.40 deleterious(0) probably_damaging(0.953) TCGA-3N-A9WB-06 2 234622153 234622153 C T UGT1A5 Silent p.F172F 0.41 TCGA-3N-A9WB-06 2 24518632 24518632 G A ITSN2 Silent p.V512V 0.33 TCGA-3N-A9WB-06 2 27726389 27726389 C T GCKR Missense_Mutation p.P218L 0.56 tolerated(0.08) benign(0.089) TCGA-3N-A9WB-06 2 50318533 50318533 G A NRXN1 Missense_Mutation p.R1256C 0.36 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WB-06 2 99204020 99204020 C T INPP4A Silent p.F961F 0.46 TCGA-3N-A9WB-06 3 108353715 108353715 C T DZIP3 Intron 0.38 TCGA-3N-A9WB-06 3 108475946 108475946 G A RETNLB Silent p.S29S 0.25 TCGA-3N-A9WB-06 3 124174063 124174063 G A KALRN Missense_Mutation p.D1196N 0.43 deleterious(0) possibly_damaging(0.821) TCGA-3N-A9WB-06 3 12475553 12475553 A G PPARG Missense_Mutation p.E476G 0.33 tolerated(0.07) benign(0.362) TCGA-3N-A9WB-06 3 127702987 127702987 G A KBTBD12 Missense_Mutation p.E580K 0.41 tolerated(0.15) possibly_damaging(0.893) TCGA-3N-A9WB-06 3 130286916 130286916 C T COL6A6 Silent p.I623I 0.52 TCGA-3N-A9WB-06 3 164906992 164906992 G A SLITRK3 Missense_Mutation p.P543S 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-3N-A9WB-06 3 182583367 182583367 A C ATP11B Missense_Mutation p.T442P 0.41 tolerated(0.29) benign(0.026) TCGA-3N-A9WB-06 3 42226209 42226209 C T TRAK1 Silent p.I132I 0.42 TCGA-3N-A9WB-06 3 49094296 49094296 G A QRICH1 Missense_Mutation p.S446L 0.53 tolerated(0.45) benign(0.001) TCGA-3N-A9WB-06 4 11401235 11401235 C T HS3ST1 Missense_Mutation p.R132Q 0.34 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 4 115750971 115750971 C T NDST4 Missense_Mutation p.R825Q 0.45 deleterious(0.02) probably_damaging(0.974) TCGA-3N-A9WB-06 4 169362499 169362499 G A DDX60L Missense_Mutation p.S428L 0.41 tolerated(0.1) benign(0.02) TCGA-3N-A9WB-06 4 2200411 2200411 A G POLN Silent p.L250L 0.36 TCGA-3N-A9WB-06 4 96762304 96762304 G A PDHA2 Missense_Mutation p.E335K 0.46 tolerated(0.49) possibly_damaging(0.702) TCGA-3N-A9WB-06 5 134870697 134870697 G T NEUROG1 Missense_Mutation p.H228Q 0.14 tolerated(0.14) benign(0.117) TCGA-3N-A9WB-06 5 13776601 13776601 G A DNAH5 Missense_Mutation p.S3107L 0.57 possibly_damaging(0.637) TCGA-3N-A9WB-06 5 137878621 137878621 C T ETF1 5'UTR 0.14 TCGA-3N-A9WB-06 5 13901505 13901505 C T DNAH5 Silent p.R636R 0.29 TCGA-3N-A9WB-06 5 140308179 140308179 G A PCDHAC1 Missense_Mutation p.E568K 0.21 deleterious(0) probably_damaging(0.946) TCGA-3N-A9WB-06 5 140574265 140574265 C T PCDHB10 Missense_Mutation p.R714W 0.27 deleterious_low_confidence(0.01) benign(0.305) TCGA-3N-A9WB-06 5 140739936 140739936 C T PCDHGB2 Silent p.N78N 0.59 TCGA-3N-A9WB-06 5 140773104 140773104 T A PCDHGA8 Missense_Mutation p.F242I 0.56 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-3N-A9WB-06 5 147928375 147928375 G A HTR4 Missense_Mutation p.S70L 0.42 deleterious(0) possibly_damaging(0.769) TCGA-3N-A9WB-06 5 151784030 151784030 G A NMUR2 Silent p.F215F 0.59 TCGA-3N-A9WB-06 5 163347 163347 G A PLEKHG4B Missense_Mutation p.E698K 0.72 deleterious(0.02) benign(0.062) TCGA-3N-A9WB-06 5 21752229 21752229 C T CDH12 Missense_Mutation p.E668K 0.42 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WB-06 5 23522499 23522499 G A PRDM9 Missense_Mutation p.D199N 0.37 deleterious(0.03) possibly_damaging(0.771) TCGA-3N-A9WB-06 5 34821921 34821921 C T RAI14 Missense_Mutation p.T363I 0.61 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 5 35875613 35875613 G A IL7R Splice_Site p.X267_splice 0.28 TCGA-3N-A9WB-06 5 41161920 41161920 G A C6 Nonsense_Mutation p.R445* 0.60 TCGA-3N-A9WB-06 5 73168998 73168998 G A ARHGEF28 Missense_Mutation p.R914Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 6 117647444 117647444 T G ROS1 Missense_Mutation p.N1834H 1.00 deleterious(0) probably_damaging(0.933) TCGA-3N-A9WB-06 6 16143420 16143420 T A MYLIP Missense_Mutation p.C212S 0.49 tolerated(0.36) possibly_damaging(0.608) TCGA-3N-A9WB-06 6 33371605 33371605 G A KIFC1 Missense_Mutation p.R152Q 0.43 tolerated(0.63) benign(0.001) TCGA-3N-A9WB-06 6 348108 348108 C T DUSP22 Missense_Mutation p.A90V 0.18 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WB-06 6 348109 348109 C T DUSP22 Silent p.A90A 0.17 TCGA-3N-A9WB-06 6 35052037 35052037 T G ANKS1A Splice_Site p.X1044_splice 0.36 TCGA-3N-A9WB-06 6 35053563 35053563 C T ANKS1A Silent p.I1051I 0.37 TCGA-3N-A9WB-06 6 36929702 36929702 C T PI16 Missense_Mutation p.P182S 0.44 tolerated(0.12) benign(0.406) TCGA-3N-A9WB-06 6 41318417 41318417 G A NCR2 Missense_Mutation p.G216R 0.37 tolerated_low_confidence(0.05) possibly_damaging(0.879) TCGA-3N-A9WB-06 6 96651112 96651112 C T FUT9 Silent p.L27L 0.82 TCGA-3N-A9WB-06 7 139790810 139790824 CAGGCAGGGGGACAG - KDM7A 3'UTR 0.40 TCGA-3N-A9WB-06 7 140434525 140434525 G A BRAF Missense_Mutation p.H725Y 0.46 deleterious(0) possibly_damaging(0.78) TCGA-3N-A9WB-06 7 141754666 141754666 C T MGAM Missense_Mutation p.P1091L 0.50 deleterious(0) possibly_damaging(0.835) TCGA-3N-A9WB-06 7 39500222 39500222 C T POU6F2 Silent p.I493I 0.35 TCGA-3N-A9WB-06 7 43503335 43503335 C T HECW1 Missense_Mutation p.P910S 0.23 tolerated(0.15) benign(0.006) TCGA-3N-A9WB-06 7 50611798 50611798 G T DDC 5'UTR 0.75 TCGA-3N-A9WB-06 7 93055580 93055580 C T CALCR 3'UTR 0.60 TCGA-3N-A9WB-06 7 93112125 93112125 G A CALCR Intron 0.56 TCGA-3N-A9WB-06 7 95035547 95035547 C T PON2 Missense_Mutation p.D264N 0.35 tolerated(0.52) benign(0.001) TCGA-3N-A9WB-06 7 97365627 97365627 C T TAC1 Silent p.S102S 0.35 TCGA-3N-A9WB-06 8 102381108 102381108 G A NACAP1 RNA 0.44 TCGA-3N-A9WB-06 8 11643672 11643672 G A NEIL2 Missense_Mutation p.V297I 0.17 deleterious(0.05) benign(0.049) TCGA-3N-A9WB-06 8 118147534 118147534 C T SLC30A8 5'Flank 0.44 TCGA-3N-A9WB-06 8 144990924 144990924 G A PLEC Silent p.A4492A 0.36 TCGA-3N-A9WB-06 8 22056776 22056776 G A BMP1 Intron 0.64 TCGA-3N-A9WB-06 8 24300024 24300024 C T ADAM7 Missense_Mutation p.R31C 0.36 deleterious(0) possibly_damaging(0.533) TCGA-3N-A9WB-06 8 39535042 39535042 C T ADAM18 Missense_Mutation p.P540S 0.14 tolerated(0.1) probably_damaging(0.965) TCGA-3N-A9WB-06 8 42585780 42585780 G A CHRNB3 Missense_Mutation p.G98D 0.32 tolerated(0.46) possibly_damaging(0.602) TCGA-3N-A9WB-06 8 8999009 8999009 G A PPP1R3B Silent p.A51A 0.35 TCGA-3N-A9WB-06 8 99468168 99468168 C T STK3 Missense_Mutation p.E488K 0.38 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WB-06 9 109686495 109686495 C T ZNF462 Missense_Mutation p.P101L 0.40 possibly_damaging(0.713) TCGA-3N-A9WB-06 9 113233783 113233783 C T SVEP1 Silent p.L953L 0.42 TCGA-3N-A9WB-06 9 113562829 113562829 G A MUSK Missense_Mutation p.R724Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WB-06 9 119976724 119976724 G T ASTN2 Missense_Mutation p.R310S 0.37 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WB-06 9 123888043 123888043 C T CNTRL Silent p.I618I 0.59 TCGA-3N-A9WB-06 9 130197370 130197370 G A ZNF79 Missense_Mutation p.G36E 0.44 tolerated(1) benign(0.003) TCGA-3N-A9WB-06 9 14746951 14746951 G A FREM1 Silent p.I2036I 0.29 TCGA-3N-A9WB-06 9 79117528 79117528 C T GCNT1 Silent p.I77I 0.51 TCGA-3N-A9WB-06 9 84226826 84226826 G A TLE1 Missense_Mutation p.P371L 0.37 deleterious(0.03) benign(0.24) TCGA-3N-A9WB-06 9 90503623 90503623 G A SPATA31E1 Silent p.R1407R 0.39 TCGA-3N-A9WB-06 9 90503624 90503624 G A SPATA31E1 Missense_Mutation p.E1408K 0.39 tolerated(0.97) possibly_damaging(0.473) TCGA-3N-A9WB-06 X 105168841 105168841 G A NRK Missense_Mutation p.E1045K 0.82 tolerated(0.07) benign(0.009) TCGA-3N-A9WB-06 X 114141332 114141332 A C HTR2C Missense_Mutation p.Q244P 0.93 deleterious(0) benign(0.289) TCGA-3N-A9WB-06 X 123539019 123539019 G A TENM1 Silent p.I1751I 1.00 TCGA-3N-A9WB-06 X 130411119 130411119 G T IGSF1 Missense_Mutation p.T806N 0.88 deleterious(0.03) possibly_damaging(0.637) TCGA-3N-A9WB-06 X 130678294 130678294 G A OR13H1 Missense_Mutation p.V83M 0.86 deleterious(0.04) benign(0.103) TCGA-3N-A9WB-06 X 19410170 19410170 C T MAP3K15 Missense_Mutation p.G794E 0.88 deleterious(0) probably_damaging(1) TCGA-3N-A9WB-06 X 34148170 34148170 G A FAM47A Silent p.F742F 0.93 TCGA-3N-A9WB-06 X 41200747 41200748 - A DDX3X Frame_Shift_Ins p.D56Rfs*8 0.49 TCGA-3N-A9WC-06 10 100150461 100150461 C T PYROXD2 Missense_Mutation p.G396S 0.27 tolerated(0.2) benign(0.005) TCGA-3N-A9WC-06 10 100150703 100150703 G A PYROXD2 Intron 0.41 TCGA-3N-A9WC-06 10 101292825 101292825 C T NKX2-3 5'UTR 0.47 TCGA-3N-A9WC-06 10 104495622 104495622 C T SFXN2 Silent p.L275L 0.37 TCGA-3N-A9WC-06 10 104569810 104569810 C T WBP1L Silent p.F118F 0.33 TCGA-3N-A9WC-06 10 105920900 105920900 G A WDR96 Silent p.F1145F 0.52 TCGA-3N-A9WC-06 10 107022096 107022096 C T SORCS3 Missense_Mutation p.P1151S 0.38 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 10 107022097 107022097 C T SORCS3 Missense_Mutation p.P1151L 0.36 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 10 113923460 113923460 G A GPAM Silent p.F474F 0.32 TCGA-3N-A9WC-06 10 115389423 115389423 T G NRAP Missense_Mutation p.K655T 0.55 tolerated(0.44) benign(0.158) TCGA-3N-A9WC-06 10 115971716 115971716 C T TDRD1 Silent p.I584I 0.32 TCGA-3N-A9WC-06 10 120905834 120905834 A C SFXN4 Missense_Mutation p.L284V 0.33 tolerated(0.06) benign(0.196) TCGA-3N-A9WC-06 10 134041507 134041507 G A STK32C Silent p.I148I 0.69 TCGA-3N-A9WC-06 10 134219790 134219790 C T PWWP2B 3'UTR 0.40 TCGA-3N-A9WC-06 10 134219791 134219791 C T PWWP2B Intron 0.40 TCGA-3N-A9WC-06 10 13538789 13538789 C T BEND7 Missense_Mutation p.R131K 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-3N-A9WC-06 10 15262966 15262966 G A FAM171A1 Missense_Mutation p.A283V 0.42 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WC-06 10 23250863 23250863 C T ARMC3 Silent p.I196I 0.28 TCGA-3N-A9WC-06 10 24508679 24508679 G A KIAA1217 Silent p.R65R 0.25 TCGA-3N-A9WC-06 10 26285456 26285456 G A MYO3A Missense_Mutation p.G114E 0.39 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WC-06 10 26443676 26443676 G A MYO3A Missense_Mutation p.G906D 0.47 tolerated(0.66) benign(0.008) TCGA-3N-A9WC-06 10 26446417 26446417 G A MYO3A Missense_Mutation p.R991Q 0.31 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 10 26505746 26505746 C T GAD2 Missense_Mutation p.S3F 0.37 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-3N-A9WC-06 10 26518701 26518701 G A GAD2 Missense_Mutation p.E279K 0.28 tolerated(0.13) benign(0.372) TCGA-3N-A9WC-06 10 27687969 27687969 C T PTCHD3 Missense_Mutation p.G520R 0.35 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WC-06 10 28229609 28229609 C T ARMC4 Silent p.T623T 0.39 TCGA-3N-A9WC-06 10 38121105 38121105 G A ZNF248 Missense_Mutation p.S393L 0.33 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 10 43317611 43317611 C T BMS1 Silent p.F1037F 0.24 TCGA-3N-A9WC-06 10 45644194 45644194 C T RP11-445N18.7 RNA 0.15 TCGA-3N-A9WC-06 10 45799947 45799947 C T OR13A1 Intron 0.31 TCGA-3N-A9WC-06 10 48385993 48385993 G T RBP3 Missense_Mutation p.F1033L 0.27 tolerated(0.12) benign(0.153) TCGA-3N-A9WC-06 10 48388840 48388840 C T RBP3 Missense_Mutation p.E680K 0.13 deleterious(0.03) benign(0.292) TCGA-3N-A9WC-06 10 48428811 48428811 C T GDF10 Missense_Mutation p.E359K 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-3N-A9WC-06 10 49365408 49365408 G A FRMPD2 Missense_Mutation p.S1296F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-3N-A9WC-06 10 50315892 50315892 G A VSTM4 Silent p.F68F 0.19 TCGA-3N-A9WC-06 10 50532238 50532238 G A C10orf71 Missense_Mutation p.E550K 0.30 tolerated(0.08) possibly_damaging(0.853) TCGA-3N-A9WC-06 10 50532525 50532525 C A C10orf71 Silent p.L645L 0.35 TCGA-3N-A9WC-06 10 51555742 51555742 G A MSMB Silent p.L5L 0.23 TCGA-3N-A9WC-06 10 5247767 5247767 C T AKR1C4 Silent p.F139F 0.38 TCGA-3N-A9WC-06 10 55569273 55569273 C T PCDH15 Missense_Mutation p.E447K 0.26 tolerated_low_confidence(0.19) unknown(0) TCGA-3N-A9WC-06 10 55582036 55582036 G A PCDH15 Missense_Mutation p.P1819L 0.26 tolerated_low_confidence(0.12) unknown(0) TCGA-3N-A9WC-06 10 55780165 55780165 G A PCDH15 Silent p.V846V 0.20 TCGA-3N-A9WC-06 10 6063460 6063460 C T IL2RA Missense_Mutation p.M188I 0.44 tolerated(0.18) benign(0.002) TCGA-3N-A9WC-06 10 61022203 61022203 C T FAM13C Silent p.E409E 0.21 TCGA-3N-A9WC-06 10 61028361 61028361 C T FAM13C Silent p.R298R 0.22 TCGA-3N-A9WC-06 10 61829707 61829707 C T ANK3 Silent p.G3644G 0.35 TCGA-3N-A9WC-06 10 61833102 61833102 C T ANK3 Missense_Mutation p.E2513K 0.22 probably_damaging(0.956) TCGA-3N-A9WC-06 10 61834218 61834218 G A ANK3 Missense_Mutation p.P2141S 0.27 probably_damaging(0.992) TCGA-3N-A9WC-06 10 61834964 61834964 G A ANK3 Missense_Mutation p.P1892L 0.26 probably_damaging(0.994) TCGA-3N-A9WC-06 10 61835230 61835230 G A ANK3 Silent p.S1803S 0.25 TCGA-3N-A9WC-06 10 61958137 61958137 G A ANK3 Silent p.F550F 0.34 TCGA-3N-A9WC-06 10 64159356 64159356 G A ZNF365 Intron 0.23 TCGA-3N-A9WC-06 10 68687097 68687097 C T LRRTM3 Silent p.S141S 0.25 TCGA-3N-A9WC-06 10 69966577 69966577 A G MYPN Missense_Mutation p.K1237R 0.36 tolerated(0.75) benign(0.072) TCGA-3N-A9WC-06 10 70500386 70500386 T C CCAR1 Silent p.L98L 0.29 TCGA-3N-A9WC-06 10 71005838 71005838 C T HKDC1 Silent p.F293F 0.28 TCGA-3N-A9WC-06 10 72468481 72468481 C T ADAMTS14 Missense_Mutation p.R273C 0.23 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 10 72536947 72536947 C T TBATA Missense_Mutation p.G218R 0.33 deleterious(0.05) benign(0.307) TCGA-3N-A9WC-06 10 73044599 73044599 C T UNC5B Nonsense_Mutation p.R143* 0.35 TCGA-3N-A9WC-06 10 74695484 74695484 G A PLA2G12B Missense_Mutation p.S160F 0.33 deleterious(0) probably_damaging(0.964) TCGA-3N-A9WC-06 10 74714416 74714416 A T PLA2G12B Missense_Mutation p.L10M 0.15 deleterious(0.02) possibly_damaging(0.766) TCGA-3N-A9WC-06 10 74894552 74894552 G A ECD Missense_Mutation p.T608I 0.23 tolerated(0.12) benign(0.214) TCGA-3N-A9WC-06 10 75082730 75082730 G A TTC18 Silent p.V371V 0.33 TCGA-3N-A9WC-06 10 75101291 75101291 C A TTC18 Nonsense_Mutation p.E220* 0.22 TCGA-3N-A9WC-06 10 75481223 75481223 C T RP11-574K11.28 RNA 0.18 TCGA-3N-A9WC-06 10 75487187 75487187 G A RP11-464F9.1 RNA 0.38 TCGA-3N-A9WC-06 10 75868806 75868806 G A VCL Silent p.E879E 0.27 TCGA-3N-A9WC-06 10 76153971 76153971 C T ADK Silent p.L116L 0.16 TCGA-3N-A9WC-06 10 76737165 76737165 T A KAT6B Silent p.V695V 0.32 TCGA-3N-A9WC-06 10 76857501 76857501 C T DUSP13 Missense_Mutation p.E98K 0.16 deleterious(0) probably_damaging(0.934) TCGA-3N-A9WC-06 10 76910412 76910412 C T SAMD8 Silent p.I42I 0.25 TCGA-3N-A9WC-06 10 79742416 79742416 G A POLR3A Missense_Mutation p.P1197S 0.28 deleterious(0.03) possibly_damaging(0.649) TCGA-3N-A9WC-06 10 79742417 79742417 G A POLR3A Silent p.L1196L 0.27 TCGA-3N-A9WC-06 10 84711289 84711289 C T NRG3 Silent p.I373I 0.42 TCGA-3N-A9WC-06 10 95372407 95372407 C T PDE6C 5'UTR 0.52 TCGA-3N-A9WC-06 10 95720523 95720523 T C PIPSL RNA 0.37 TCGA-3N-A9WC-06 10 96534946 96534946 C T CYP2C19 Silent p.F100F 0.39 TCGA-3N-A9WC-06 10 96798685 96798685 C T CYP2C8 Silent p.K420K 0.48 TCGA-3N-A9WC-06 10 96824560 96824560 G A CYP2C8 Silent p.I213I 0.37 TCGA-3N-A9WC-06 10 96827004 96827004 C T CYP2C8 Missense_Mutation p.E148K 0.34 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 10 97452743 97452743 G A TCTN3 Missense_Mutation p.P145S 0.50 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 11 100211269 100211269 C T CNTN5 Silent p.V935V 0.64 TCGA-3N-A9WC-06 11 101833364 101833364 C T KIAA1377 Missense_Mutation p.S533L 0.22 tolerated(0.11) benign(0.081) TCGA-3N-A9WC-06 11 101984953 101984953 T C YAP1 Silent p.L134L 0.32 TCGA-3N-A9WC-06 11 102710856 102710856 G A MMP3 Silent p.I306I 0.31 TCGA-3N-A9WC-06 11 103908198 103908198 G A DDI1 Silent p.E216E 0.27 TCGA-3N-A9WC-06 11 105924660 105924660 C T KBTBD3 Silent p.Q252Q 0.15 TCGA-3N-A9WC-06 11 108382468 108382468 G A EXPH5 Silent p.L1256L 0.33 TCGA-3N-A9WC-06 11 113102994 113102994 G A NCAM1 Nonsense_Mutation p.W497* 0.44 TCGA-3N-A9WC-06 11 113102995 113102995 G A NCAM1 Nonsense_Mutation p.W497* 0.43 TCGA-3N-A9WC-06 11 117063579 117063579 C T SIDT2 Missense_Mutation p.S701L 0.43 deleterious(0.04) possibly_damaging(0.71) TCGA-3N-A9WC-06 11 118221340 118221340 C T CD3G Silent p.F127F 0.32 TCGA-3N-A9WC-06 11 119290839 119290839 C T THY1 Missense_Mutation p.E99K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WC-06 11 121440892 121440892 C T SORL1 Missense_Mutation p.R1084C 0.36 deleterious(0.01) possibly_damaging(0.883) TCGA-3N-A9WC-06 11 12316175 12316175 C T MICALCL Silent p.S399S 0.30 TCGA-3N-A9WC-06 11 123777823 123777823 C T OR8D4 Missense_Mutation p.H229Y 0.45 deleterious(0.01) possibly_damaging(0.545) TCGA-3N-A9WC-06 11 123894571 123894571 T G OR10G9 Silent p.P284P 0.38 TCGA-3N-A9WC-06 11 123900446 123900446 G A OR10G8 Silent p.G39G 0.45 TCGA-3N-A9WC-06 11 123988472 123988472 C T VWA5A Missense_Mutation p.P46S 0.29 deleterious(0.04) possibly_damaging(0.855) TCGA-3N-A9WC-06 11 124180336 124180336 C T OR8D1 Silent p.V109V 0.44 TCGA-3N-A9WC-06 11 124189289 124189289 C T OR8D2 Missense_Mutation p.E269K 0.43 tolerated(0.09) possibly_damaging(0.492) TCGA-3N-A9WC-06 11 124310289 124310289 C T OR8B8 Silent p.T231T 0.42 TCGA-3N-A9WC-06 11 124489330 124489330 C T PANX3 Silent p.Y226Y 0.26 TCGA-3N-A9WC-06 11 124564383 124564383 A G SPA17 3'UTR 0.32 TCGA-3N-A9WC-06 11 125791124 125791124 G T DDX25 Missense_Mutation p.D414Y 0.33 deleterious(0) probably_damaging(0.938) TCGA-3N-A9WC-06 11 125871628 125871628 G A CDON Missense_Mutation p.S715F 0.38 deleterious(0) probably_damaging(0.927) TCGA-3N-A9WC-06 11 128843409 128843409 G A ARHGAP32 Intron 0.42 TCGA-3N-A9WC-06 11 129306851 129306851 G A BARX2 Silent p.K131K 0.26 TCGA-3N-A9WC-06 11 130131427 130131427 G A ZBTB44 Silent p.F114F 0.20 TCGA-3N-A9WC-06 11 130278693 130278693 C T ADAMTS8 Silent p.G631G 0.31 TCGA-3N-A9WC-06 11 14277324 14277324 C T SPON1 RNA 0.42 TCGA-3N-A9WC-06 11 17096726 17096726 G A RPS13 Missense_Mutation p.R114C 0.43 deleterious(0.02) benign(0.009) TCGA-3N-A9WC-06 11 18050754 18050754 C T TPH1 Missense_Mutation p.D209N 0.45 tolerated(0.1) benign(0.037) TCGA-3N-A9WC-06 11 18359781 18359781 C T GTF2H1 Missense_Mutation p.S158F 0.33 tolerated(0.09) benign(0.185) TCGA-3N-A9WC-06 11 18956407 18956407 C T MRGPRX1 5'UTR 0.28 TCGA-3N-A9WC-06 11 1905772 1905772 G A LSP1 Silent p.K354K 0.32 TCGA-3N-A9WC-06 11 30937114 30937114 C T DCDC1 Silent p.L1199L 0.21 TCGA-3N-A9WC-06 11 31454083 31454086 ACGT CTG IMMP1L Frame_Shift_Del p.L154Ffs*20 0.30 TCGA-3N-A9WC-06 11 32452136 32452136 G A WT1 Intron 0.50 TCGA-3N-A9WC-06 11 3423916 3423916 C T TSSC2 RNA 0.61 TCGA-3N-A9WC-06 11 36511381 36511381 G A TRAF6 3'UTR 0.27 TCGA-3N-A9WC-06 11 40137423 40137423 C T LRRC4C Silent p.P140P 0.23 TCGA-3N-A9WC-06 11 4148290 4148290 G A RRM1 Missense_Mutation p.R499H 0.40 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-3N-A9WC-06 11 44102848 44102848 G A ACCS Missense_Mutation p.M363I 0.20 tolerated(0.06) benign(0.034) TCGA-3N-A9WC-06 11 45832420 45832420 C T SLC35C1 Missense_Mutation p.S210L 0.51 deleterious(0) possibly_damaging(0.853) TCGA-3N-A9WC-06 11 46726702 46726702 G A ZNF408 Silent p.R484R 0.46 TCGA-3N-A9WC-06 11 48267339 48267339 C T OR4X2 Silent p.A228A 0.35 TCGA-3N-A9WC-06 11 48346788 48346788 C T OR4C3 Missense_Mutation p.S99F 0.12 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 11 48347463 48347463 G A OR4C3 Missense_Mutation p.R324K 0.22 tolerated(0.45) benign(0.004) TCGA-3N-A9WC-06 11 49597720 49597720 C T RP11-707M1.1 RNA 0.40 TCGA-3N-A9WC-06 11 4967539 4967539 G A OR51A4 Silent p.R264R 0.25 TCGA-3N-A9WC-06 11 4976152 4976152 G A OR51A2 Silent p.R264R 0.22 TCGA-3N-A9WC-06 11 5080296 5080296 G A OR52E2 Missense_Mutation p.H188Y 0.68 deleterious(0) benign(0.184) TCGA-3N-A9WC-06 11 5172933 5172933 G T OR52A1 Missense_Mutation p.Q223K 0.51 tolerated(0.22) benign(0.004) TCGA-3N-A9WC-06 11 5172934 5172934 G A OR52A1 Silent p.I222I 0.50 TCGA-3N-A9WC-06 11 5269710 5269710 C T HBG1 Missense_Mutation p.G108E 0.26 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 11 5411534 5411534 C T OR51M1 Silent p.I302I 0.50 TCGA-3N-A9WC-06 11 55063060 55063060 C G TRIM51HP RNA 0.21 TCGA-3N-A9WC-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.20 deleterious_low_confidence(0) benign(0.072) TCGA-3N-A9WC-06 11 55135779 55135779 C T OR4A15 Silent p.V140V 0.24 TCGA-3N-A9WC-06 11 55322349 55322349 G A OR4C15 Missense_Mutation p.M189I 0.25 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-3N-A9WC-06 11 55322738 55322738 C T OR4C15 Missense_Mutation p.S319F 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-3N-A9WC-06 11 55432693 55432693 G A OR4C6 Silent p.E17E 0.32 TCGA-3N-A9WC-06 11 55579197 55579197 C T OR5L1 Silent p.I85I 0.28 TCGA-3N-A9WC-06 11 55606419 55606419 C T OR5D16 Silent p.F64F 0.27 TCGA-3N-A9WC-06 11 5566134 5566134 C T OR52H1 Missense_Mutation p.G207D 0.44 deleterious(0) probably_damaging(0.948) TCGA-3N-A9WC-06 11 55762075 55762075 C T OR5F1 Silent p.L9L 0.31 TCGA-3N-A9WC-06 11 55872687 55872687 C T OR8H2 Missense_Mutation p.H57Y 0.26 deleterious(0.01) benign(0.167) TCGA-3N-A9WC-06 11 55999869 55999869 G A OR5T2 Silent p.L265L 0.24 TCGA-3N-A9WC-06 11 56020259 56020259 G A OR5T3 Missense_Mutation p.S195N 0.31 tolerated(0.07) benign(0.049) TCGA-3N-A9WC-06 11 56113574 56113574 C T OR8K1 Silent p.L20L 0.19 TCGA-3N-A9WC-06 11 56510751 56510751 G A OR9G4 Silent p.F179F 0.34 TCGA-3N-A9WC-06 11 5655052 5655052 C T TRIM34 Missense_Mutation p.L148F 0.29 deleterious(0.01) possibly_damaging(0.703) TCGA-3N-A9WC-06 11 56756999 56756999 G A OR5AK2 Missense_Mutation p.G204E 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-3N-A9WC-06 11 5687250 5687250 G A TRIM5 Nonsense_Mutation p.R277* 0.41 TCGA-3N-A9WC-06 11 56949823 56949823 C T LRRC55 Silent p.F152F 0.23 TCGA-3N-A9WC-06 11 57101014 57101014 C T SSRP1 Missense_Mutation p.E81K 0.27 deleterious(0.01) possibly_damaging(0.507) TCGA-3N-A9WC-06 11 57118272 57118272 G A P2RX3 Missense_Mutation p.D248N 0.38 tolerated(0.59) benign(0.386) TCGA-3N-A9WC-06 11 57798895 57798895 C T OR6Q1 Silent p.F157F 0.40 TCGA-3N-A9WC-06 11 57958463 57958463 C T OR9Q2 Silent p.S167S 0.16 TCGA-3N-A9WC-06 11 58035349 58035349 C T OR10W1 5'UTR 0.30 TCGA-3N-A9WC-06 11 58125958 58125958 C T OR5B17 Silent p.L195L 0.41 TCGA-3N-A9WC-06 11 58190150 58190150 C T OR5B2 Silent p.V195V 0.16 TCGA-3N-A9WC-06 11 58190555 58190555 G A OR5B2 Silent p.F60F 0.36 TCGA-3N-A9WC-06 11 58206764 58206764 G A OR5B12 Silent p.V287V 0.12 TCGA-3N-A9WC-06 11 58477999 58477999 G A GLYAT Intron 0.20 TCGA-3N-A9WC-06 11 5862855 5862855 G A OR52E6 Silent p.I91I 0.39 TCGA-3N-A9WC-06 11 59211119 59211119 C T OR5A1 Silent p.L160L 0.23 TCGA-3N-A9WC-06 11 59225030 59225030 G A OR4D6 Missense_Mutation p.M199I 0.25 tolerated(0.18) benign(0.159) TCGA-3N-A9WC-06 11 59282657 59282657 C T OR4D9 Missense_Mutation p.T91I 0.18 tolerated(0.11) possibly_damaging(0.486) TCGA-3N-A9WC-06 11 5969017 5969017 G A OR56A3 Silent p.K147K 0.37 TCGA-3N-A9WC-06 11 60183616 60183616 C T MS4A14 Missense_Mutation p.S425F 0.35 deleterious(0.01) benign(0.247) TCGA-3N-A9WC-06 11 60274612 60274612 G A MS4A12 3'UTR 0.26 TCGA-3N-A9WC-06 11 60781027 60781027 G A CD6 Missense_Mutation p.G428E 0.16 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 11 61290637 61290637 G A SYT7 Silent p.F414F 0.44 TCGA-3N-A9WC-06 11 62744675 62744675 C T SLC22A6 Missense_Mutation p.V516M 0.40 deleterious(0.01) possibly_damaging(0.517) TCGA-3N-A9WC-06 11 62782110 62782110 G A SLC22A8 Silent p.S107S 0.38 TCGA-3N-A9WC-06 11 62948230 62948230 C T SLC22A25 Missense_Mutation p.M324I 0.32 tolerated(0.07) benign(0.05) TCGA-3N-A9WC-06 11 65653032 65653032 G A FIBP Silent p.L205L 0.39 TCGA-3N-A9WC-06 11 66133976 66133976 C T SLC29A2 Missense_Mutation p.E265K 0.23 tolerated(0.24) possibly_damaging(0.697) TCGA-3N-A9WC-06 11 66192396 66192396 C T NPAS4 Missense_Mutation p.P679S 0.24 tolerated_low_confidence(0.6) possibly_damaging(0.86) TCGA-3N-A9WC-06 11 68518005 68518005 C T MTL5 Missense_Mutation p.E42K 0.33 tolerated_low_confidence(0.06) benign(0.242) TCGA-3N-A9WC-06 11 68518073 68518073 G A MTL5 Missense_Mutation p.T19M 0.38 tolerated_low_confidence(0.07) possibly_damaging(0.855) TCGA-3N-A9WC-06 11 68675672 68675672 T C IGHMBP2 Silent p.L106L 0.34 TCGA-3N-A9WC-06 11 70282432 70282432 C G CTTN Missense_Mutation p.P608R 0.23 tolerated_low_confidence(0.06) benign(0) TCGA-3N-A9WC-06 11 71276830 71276830 C T KRTAP5-10 Missense_Mutation p.S66F 0.19 unknown(0) TCGA-3N-A9WC-06 11 71276927 71276927 G A KRTAP5-10 Silent p.G98G 0.30 TCGA-3N-A9WC-06 11 71277330 71277330 C T KRTAP5-10 3'UTR 0.40 TCGA-3N-A9WC-06 11 72412710 72412710 G A ARAP1 Silent p.D762D 0.27 TCGA-3N-A9WC-06 11 72945147 72945147 C T P2RY2 5'UTR 0.50 TCGA-3N-A9WC-06 11 73130956 73130956 G A FAM168A Silent p.T80T 0.22 TCGA-3N-A9WC-06 11 73130957 73130957 G A FAM168A Missense_Mutation p.T80I 0.22 tolerated_low_confidence(0.4) benign(0.022) TCGA-3N-A9WC-06 11 74058278 74058278 G A PGM2L1 Missense_Mutation p.P285L 0.30 tolerated(1) probably_damaging(1) TCGA-3N-A9WC-06 11 75507509 75507509 G T DGAT2 Missense_Mutation p.R189L 0.28 deleterious(0.03) benign(0.107) TCGA-3N-A9WC-06 11 75507510 75507510 G A DGAT2 Silent p.R189R 0.28 TCGA-3N-A9WC-06 11 7656804 7656804 T - PPFIBP2 Frame_Shift_Del p.F406Sfs*4 0.30 TCGA-3N-A9WC-06 11 76885900 76885900 C T MYO7A Silent p.F678F 0.52 TCGA-3N-A9WC-06 11 7984961 7984961 A C NLRP10 Missense_Mutation p.L28V 0.50 deleterious(0.02) possibly_damaging(0.705) TCGA-3N-A9WC-06 11 85445533 85445533 G A SYTL2 Missense_Mutation p.S279F 0.16 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 11 88780589 88780589 G A GRM5 Missense_Mutation p.S151F 0.24 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 11 89431707 89431707 G A FOLH1B RNA 0.28 TCGA-3N-A9WC-06 11 92085813 92085813 C T FAT3 Nonsense_Mutation p.Q179* 0.28 TCGA-3N-A9WC-06 11 92086628 92086628 G A FAT3 Silent p.K450K 0.27 TCGA-3N-A9WC-06 11 92086880 92086880 G A FAT3 Silent p.L534L 0.25 TCGA-3N-A9WC-06 11 93822073 93822073 G A HEPHL1 Missense_Mutation p.D745N 0.27 tolerated(0.05) possibly_damaging(0.609) TCGA-3N-A9WC-06 11 94040854 94040854 C T FOLR4 Missense_Mutation p.S243F 0.27 deleterious(0) probably_damaging(0.991) TCGA-3N-A9WC-06 12 100729628 100729628 C T SCYL2 Silent p.L657L 0.24 TCGA-3N-A9WC-06 12 100796224 100796224 C A SLC17A8 Missense_Mutation p.S290R 0.32 deleterious(0) possibly_damaging(0.868) TCGA-3N-A9WC-06 12 101381317 101381317 G A ANO4 Silent p.R166R 0.27 TCGA-3N-A9WC-06 12 101520716 101520716 C A ANO4 Missense_Mutation p.D877E 0.19 tolerated(0.18) benign(0.121) TCGA-3N-A9WC-06 12 101560318 101560318 C T SLC5A8 Missense_Mutation p.E494K 0.18 tolerated(0.81) benign(0.042) TCGA-3N-A9WC-06 12 102542239 102542239 C T PARPBP Missense_Mutation p.P129S 0.30 tolerated(0.21) benign(0.187) TCGA-3N-A9WC-06 12 104134520 104134520 G A STAB2 Missense_Mutation p.G1956E 0.33 deleterious(0) probably_damaging(0.915) TCGA-3N-A9WC-06 12 104681164 104681164 C T TXNRD1 Intron 0.25 TCGA-3N-A9WC-06 12 104712759 104712759 C T TXNRD1 Nonsense_Mutation p.R267* 0.20 TCGA-3N-A9WC-06 12 10588440 10588440 G A KLRC2 Missense_Mutation p.S49F 0.29 deleterious(0) benign(0.404) TCGA-3N-A9WC-06 12 106890684 106890684 C T POLR3B Missense_Mutation p.S991F 0.33 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 12 108011078 108011078 G A BTBD11 Missense_Mutation p.G699E 0.27 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 12 108145711 108145711 G A PRDM4 Missense_Mutation p.P203S 0.30 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-3N-A9WC-06 12 108634206 108634206 C T WSCD2 Silent p.A410A 0.32 TCGA-3N-A9WC-06 12 108686245 108686245 G A CMKLR1 Silent p.V165V 0.23 TCGA-3N-A9WC-06 12 109292538 109292538 G A DAO Nonsense_Mutation p.W260* 0.25 TCGA-3N-A9WC-06 12 109292539 109292539 G A DAO Nonsense_Mutation p.W260* 0.26 TCGA-3N-A9WC-06 12 109294334 109294334 C T DAO 3'UTR 0.26 TCGA-3N-A9WC-06 12 109839017 109839017 G A MYO1H Silent p.E214E 0.17 TCGA-3N-A9WC-06 12 109893953 109893953 G A KCTD10 Silent p.I231I 0.18 TCGA-3N-A9WC-06 12 110933823 110933823 G A VPS29 Silent p.F67F 0.22 TCGA-3N-A9WC-06 12 111776253 111776253 G A CUX2 Silent p.R1120R 0.14 TCGA-3N-A9WC-06 12 112230430 112230430 C T ALDH2 Silent p.F309F 0.38 TCGA-3N-A9WC-06 12 113357261 113357261 G A OAS1 Intron 0.25 TCGA-3N-A9WC-06 12 11338827 11338827 G A TAS2R42 Silent p.F239F 0.28 TCGA-3N-A9WC-06 12 113629408 113629408 C T RITA1 Missense_Mutation p.S199F 0.28 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WC-06 12 113629409 113629409 C T RITA1 Silent p.S199S 0.30 TCGA-3N-A9WC-06 12 113770595 113770595 G A SLC8B1 Missense_Mutation p.S30L 0.36 tolerated_low_confidence(0.57) benign(0) TCGA-3N-A9WC-06 12 113865814 113865814 C T SDSL Silent p.A9A 0.29 TCGA-3N-A9WC-06 12 116534524 116534524 C T MED13L Silent p.G143G 0.20 TCGA-3N-A9WC-06 12 117665424 117665424 C T NOS1 Nonsense_Mutation p.W1177* 0.20 TCGA-3N-A9WC-06 12 117964916 117964916 C T KSR2 Missense_Mutation p.G604E 0.29 tolerated(0.49) benign(0.003) TCGA-3N-A9WC-06 12 12022668 12022668 C T ETV6 Silent p.P258P 0.33 TCGA-3N-A9WC-06 12 120791106 120791106 G A MSI1 Silent p.F243F 0.28 TCGA-3N-A9WC-06 12 120990385 120990385 C T RNF10 Silent p.F146F 0.21 TCGA-3N-A9WC-06 12 121441994 121441994 G A C12orf43 Missense_Mutation p.P251S 0.23 tolerated(0.09) benign(0.047) TCGA-3N-A9WC-06 12 122017965 122017965 G A KDM2B Intron 0.20 TCGA-3N-A9WC-06 12 122803822 122803822 G A CLIP1 Missense_Mutation p.S1108F 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-3N-A9WC-06 12 123433213 123433213 G A ABCB9 Silent p.P337P 0.30 TCGA-3N-A9WC-06 12 123475208 123475208 G A PITPNM2 Missense_Mutation p.P818L 0.31 tolerated(0.14) probably_damaging(1) TCGA-3N-A9WC-06 12 124330249 124330249 G A DNAH10 Silent p.G1703G 0.21 TCGA-3N-A9WC-06 12 124330345 124330345 G A DNAH10 Silent p.R1735R 0.27 TCGA-3N-A9WC-06 12 124379213 124379213 G A DNAH10 Missense_Mutation p.D2957N 0.19 probably_damaging(0.962) TCGA-3N-A9WC-06 12 124824663 124824663 G A NCOR2 Missense_Mutation p.P1859L 0.18 probably_damaging(0.915) TCGA-3N-A9WC-06 12 125397667 125397667 G A UBC Silent p.S217S 0.24 TCGA-3N-A9WC-06 12 125900117 125900117 G A TMEM132B Missense_Mutation p.V329I 0.27 tolerated(0.07) benign(0.035) TCGA-3N-A9WC-06 12 125900136 125900136 G A TMEM132B Nonsense_Mutation p.W335* 0.25 TCGA-3N-A9WC-06 12 126138586 126138586 G A TMEM132B Missense_Mutation p.G856E 0.18 tolerated(0.39) benign(0.023) TCGA-3N-A9WC-06 12 126138908 126138908 C T TMEM132B Silent p.L963L 0.32 TCGA-3N-A9WC-06 12 12790543 12790543 C T CREBL2 Missense_Mutation p.P85S 0.25 deleterious(0.04) probably_damaging(0.989) TCGA-3N-A9WC-06 12 130883579 130883579 G A RIMBP2 3'UTR 0.26 TCGA-3N-A9WC-06 12 130929712 130929712 G A RIMBP2 Silent p.F211F 0.37 TCGA-3N-A9WC-06 12 132329735 132329735 C T MMP17 Silent p.F347F 0.26 TCGA-3N-A9WC-06 12 132445290 132445290 C T EP400 Silent p.F42F 0.23 TCGA-3N-A9WC-06 12 133272536 133272536 G A PXMP2 Silent p.E101E 0.31 TCGA-3N-A9WC-06 12 13720049 13720049 G A GRIN2B Silent p.F836F 0.41 TCGA-3N-A9WC-06 12 14664645 14664645 C T PLBD1 Missense_Mutation p.G282E 0.24 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 12 14804348 14804348 G A GUCY2C Missense_Mutation p.S568F 0.16 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 12 18836244 18836244 G A PLCZ1 Missense_Mutation p.P586S 0.16 tolerated(0.46) probably_damaging(0.992) TCGA-3N-A9WC-06 12 18837109 18837109 C T PLCZ1 Missense_Mutation p.E566K 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-3N-A9WC-06 12 18854670 18854670 C T PLCZ1 Missense_Mutation p.G302E 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-3N-A9WC-06 12 21207407 21207407 G A SLCO1B7 Missense_Mutation p.V460M 0.21 deleterious(0.04) benign(0.379) TCGA-3N-A9WC-06 12 21220271 21220271 G A SLCO1B7 Silent p.L520L 0.42 TCGA-3N-A9WC-06 12 22487185 22487185 G A ST8SIA1 5'UTR 0.29 TCGA-3N-A9WC-06 12 2566793 2566793 G A CACNA1C Silent p.G226G 0.21 TCGA-3N-A9WC-06 12 2676847 2676847 C T CACNA1C Silent p.F594F 0.17 TCGA-3N-A9WC-06 12 2691997 2691997 G A CACNA1C Missense_Mutation p.G705R 0.37 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 12 2716190 2716190 C T CACNA1C Missense_Mutation p.P1104S 0.21 deleterious(0) possibly_damaging(0.722) TCGA-3N-A9WC-06 12 2778149 2778149 C T CACNA1C Silent p.F1606F 0.32 TCGA-3N-A9WC-06 12 40076418 40076418 G A C12orf40 Missense_Mutation p.G231E 0.26 tolerated(0.6) benign(0.078) TCGA-3N-A9WC-06 12 40699657 40699657 C T LRRK2 Missense_Mutation p.S1283F 0.28 tolerated(0.08) benign(0.109) TCGA-3N-A9WC-06 12 41318451 41318451 C T CNTN1 Missense_Mutation p.P165S 0.17 tolerated(0.11) possibly_damaging(0.905) TCGA-3N-A9WC-06 12 43846459 43846459 C T ADAMTS20 Missense_Mutation p.M600I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 12 44124182 44124182 A T PUS7L Silent p.V701V 0.12 TCGA-3N-A9WC-06 12 44782226 44782226 C T TMEM117 Missense_Mutation p.P439L 0.34 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-3N-A9WC-06 12 45269332 45269332 C T NELL2 Intron 0.40 TCGA-3N-A9WC-06 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-3N-A9WC-06 12 46242662 46242662 C T ARID2 Nonsense_Mutation p.R542* 0.28 TCGA-3N-A9WC-06 12 46582806 46582806 G A SLC38A1 Missense_Mutation p.P471S 0.24 tolerated(1) probably_damaging(0.999) TCGA-3N-A9WC-06 12 46633547 46633547 A G SLC38A1 Silent p.L13L 0.29 TCGA-3N-A9WC-06 12 46633559 46633559 C T SLC38A1 Missense_Mutation p.E9K 0.27 deleterious(0.03) probably_damaging(0.972) TCGA-3N-A9WC-06 12 47186763 47186763 C T SLC38A4 Missense_Mutation p.G31E 0.19 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 12 47471953 47471953 C T AMIGO2 Missense_Mutation p.S278N 0.19 tolerated(0.77) benign(0.002) TCGA-3N-A9WC-06 12 48258918 48258918 G A VDR Silent p.N113N 0.38 TCGA-3N-A9WC-06 12 48723768 48723768 G A H1FNT Missense_Mutation p.D232N 0.27 tolerated(0.06) possibly_damaging(0.728) TCGA-3N-A9WC-06 12 48919757 48919757 C T OR8S1 Missense_Mutation p.L115F 0.25 deleterious(0) probably_damaging(0.962) TCGA-3N-A9WC-06 12 49087234 49087234 G A CCNT1 Missense_Mutation p.P588L 0.34 tolerated(0.06) benign(0.002) TCGA-3N-A9WC-06 12 49099669 49099669 G A CCNT1 Missense_Mutation p.P85L 0.18 deleterious(0.01) possibly_damaging(0.611) TCGA-3N-A9WC-06 12 49099670 49099670 G A CCNT1 Missense_Mutation p.P85S 0.16 tolerated(0.07) benign(0.029) TCGA-3N-A9WC-06 12 4920426 4920426 C T KCNA6 Missense_Mutation p.P407S 0.28 tolerated(1) benign(0.007) TCGA-3N-A9WC-06 12 50042873 50042873 C T FMNL3 Silent p.E818E 0.25 TCGA-3N-A9WC-06 12 5021794 5021794 G A KCNA1 Missense_Mutation p.R417Q 0.28 tolerated(0.05) probably_damaging(0.989) TCGA-3N-A9WC-06 12 51856201 51856201 C T SLC4A8 Silent p.P403P 0.21 TCGA-3N-A9WC-06 12 52200541 52200541 C T SCN8A Silent p.V1757V 0.26 TCGA-3N-A9WC-06 12 52312876 52312876 C T ACVRL1 Missense_Mutation p.P452S 0.32 deleterious(0.03) benign(0.145) TCGA-3N-A9WC-06 12 52565202 52565202 C T KRT80 Missense_Mutation p.E447K 0.17 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-3N-A9WC-06 12 52629044 52629044 C T KRT7 Nonsense_Mutation p.Q144* 0.33 TCGA-3N-A9WC-06 12 52941935 52941935 C T KRT71 Splice_Site p.X326_splice 0.21 TCGA-3N-A9WC-06 12 53170821 53170821 C T KRT76 Silent p.R85R 0.25 TCGA-3N-A9WC-06 12 53454866 53454866 T A TENC1 Missense_Mutation p.L1069Q 0.27 deleterious(0.01) possibly_damaging(0.837) TCGA-3N-A9WC-06 12 53454867 53454867 G A TENC1 Silent p.L1069L 0.26 TCGA-3N-A9WC-06 12 54687025 54687025 G A NFE2 Silent p.L85L 0.26 TCGA-3N-A9WC-06 12 55421171 55421171 C T NEUROD4 Silent p.Y316Y 0.29 TCGA-3N-A9WC-06 12 55615437 55615437 C T OR10A7 Missense_Mutation p.P210L 0.20 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 12 55688223 55688223 C T OR6C6 Missense_Mutation p.R265K 0.41 tolerated_low_confidence(0.07) probably_damaging(0.926) TCGA-3N-A9WC-06 12 55725754 55725754 C T OR6C3 Silent p.S90S 0.30 TCGA-3N-A9WC-06 12 55726160 55726160 C T OR6C3 Missense_Mutation p.P226S 0.27 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-3N-A9WC-06 12 55886648 55886648 C T OR6C68 Missense_Mutation p.H163Y 0.22 deleterious_low_confidence(0.04) benign(0.003) TCGA-3N-A9WC-06 12 55945843 55945843 C T OR6C4 Missense_Mutation p.S278L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-3N-A9WC-06 12 56297187 56297187 G A WIBG Nonsense_Mutation p.Q39* 0.19 TCGA-3N-A9WC-06 12 56351447 56351447 G A PMEL Missense_Mutation p.P214S 0.14 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 12 56515429 56515429 G T ZC3H10 Missense_Mutation p.E361D 0.19 tolerated(0.26) benign(0.108) TCGA-3N-A9WC-06 12 56720418 56720418 G A PAN2 Silent p.N415N 0.32 TCGA-3N-A9WC-06 12 5672625 5672625 A G ANO2 Missense_Mutation p.L946P 0.41 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 12 56845110 56845110 G A MIP Missense_Mutation p.P249L 0.21 tolerated(0.26) benign(0.005) TCGA-3N-A9WC-06 12 5708726 5708726 C T ANO2 Silent p.S719S 0.29 TCGA-3N-A9WC-06 12 57111868 57111868 G A NACA Intron 0.27 TCGA-3N-A9WC-06 12 57398578 57398578 G A ZBTB39 Missense_Mutation p.P42S 0.25 tolerated(0.29) probably_damaging(0.999) TCGA-3N-A9WC-06 12 57577221 57577221 C T LRP1 Missense_Mutation p.P1908S 0.21 probably_damaging(0.998) TCGA-3N-A9WC-06 12 57969476 57969476 G A KIF5A Silent p.K653K 0.22 TCGA-3N-A9WC-06 12 58024830 58024830 G A B4GALNT1 Silent p.A141A 0.35 TCGA-3N-A9WC-06 12 59279663 59279663 G A LRIG3 Silent p.I398I 0.28 TCGA-3N-A9WC-06 12 60168827 60168827 C T SLC16A7 Silent p.L251L 0.25 TCGA-3N-A9WC-06 12 62103991 62103991 C T FAM19A2 3'UTR 0.44 TCGA-3N-A9WC-06 12 65564215 65564215 C T LEMD3 Missense_Mutation p.S280F 0.17 deleterious_low_confidence(0.01) benign(0.224) TCGA-3N-A9WC-06 12 66308953 66308953 C T HMGA2 Intron 0.33 TCGA-3N-A9WC-06 12 66770992 66770992 C T GRIP1 Missense_Mutation p.E847K 0.31 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WC-06 12 66788040 66788040 G A GRIP1 Missense_Mutation p.P641S 0.24 deleterious(0) possibly_damaging(0.644) TCGA-3N-A9WC-06 12 70149271 70149271 C T RAB3IP Missense_Mutation p.S44L 0.27 tolerated_low_confidence(0.09) benign(0.001) TCGA-3N-A9WC-06 12 70194042 70194042 G A RAB3IP Missense_Mutation p.M330I 0.28 tolerated(0.12) benign(0.108) TCGA-3N-A9WC-06 12 7090339 7090339 G A LPCAT3 Silent p.S168S 0.24 TCGA-3N-A9WC-06 12 70928384 70928384 C T PTPRB Silent p.T2084T 0.29 TCGA-3N-A9WC-06 12 70946584 70946584 C T PTPRB Missense_Mutation p.G1787E 0.16 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 12 70946637 70946637 C T PTPRB Silent p.E1769E 0.22 TCGA-3N-A9WC-06 12 70980810 70980810 G A PTPRB Missense_Mutation p.S763F 0.24 tolerated(0.33) possibly_damaging(0.813) TCGA-3N-A9WC-06 12 70988454 70988454 G A PTPRB Silent p.L437L 0.17 TCGA-3N-A9WC-06 12 7172528 7172528 G A C1S Silent p.V214V 0.19 TCGA-3N-A9WC-06 12 72026720 72026720 C T ZFC3H1 Silent p.K921K 0.32 TCGA-3N-A9WC-06 12 7288815 7288815 G A CLSTN3 Silent p.R252R 0.25 TCGA-3N-A9WC-06 12 72969044 72969044 G A TRHDE Missense_Mutation p.R669K 0.23 tolerated(0.78) benign(0.002) TCGA-3N-A9WC-06 12 7303279 7303279 C T CLSTN3 Silent p.I795I 0.31 TCGA-3N-A9WC-06 12 75444644 75444644 C T KCNC2 Missense_Mutation p.E381K 0.25 deleterious(0) probably_damaging(0.958) TCGA-3N-A9WC-06 12 7548884 7548884 C T CD163L1 Silent p.V619V 0.27 TCGA-3N-A9WC-06 12 79689860 79689860 G A SYT1 Silent p.G162G 0.24 TCGA-3N-A9WC-06 12 80729835 80729835 G A OTOGL Silent p.K1496K 0.32 TCGA-3N-A9WC-06 12 81329538 81329538 C T LIN7A Intron 0.18 TCGA-3N-A9WC-06 12 81762561 81762561 T A PPFIA2 Missense_Mutation p.E475D 0.23 deleterious(0) possibly_damaging(0.864) TCGA-3N-A9WC-06 12 81762563 81762563 C A PPFIA2 Nonsense_Mutation p.E475* 0.24 TCGA-3N-A9WC-06 12 8377432 8377432 C T FAM90A1 5'UTR 0.13 TCGA-3N-A9WC-06 12 8377463 8377463 C T FAM90A1 5'UTR 0.18 TCGA-3N-A9WC-06 12 8687365 8687365 C T CLEC4E Missense_Mutation p.E177K 0.22 deleterious(0.05) probably_damaging(1) TCGA-3N-A9WC-06 12 9004828 9004828 C T A2ML1 Missense_Mutation p.S829L 0.26 deleterious(0.03) benign(0.429) TCGA-3N-A9WC-06 12 9009927 9009927 C T A2ML1 Silent p.L1006L 0.22 TCGA-3N-A9WC-06 12 9016535 9016535 G A A2ML1 Silent p.A1216A 0.25 TCGA-3N-A9WC-06 12 9020628 9020628 C T A2ML1 Missense_Mutation p.S1303L 0.35 tolerated(0.23) benign(0.15) TCGA-3N-A9WC-06 12 9095088 9095088 C T M6PR Missense_Mutation p.R212Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 12 9264781 9264781 C T A2M Missense_Mutation p.E153K 0.14 tolerated(0.71) benign(0.005) TCGA-3N-A9WC-06 12 9266029 9266029 G A A2M Missense_Mutation p.S66F 0.20 tolerated(0.24) benign(0.005) TCGA-3N-A9WC-06 12 95660173 95660173 A T VEZT Missense_Mutation p.M159L 0.29 tolerated(1) benign(0.043) TCGA-3N-A9WC-06 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.21 tolerated(0.07) benign(0.183) TCGA-3N-A9WC-06 12 97151316 97151316 C T C12orf55 Missense_Mutation p.H2664Y 0.27 tolerated(0.23) benign(0) TCGA-3N-A9WC-06 12 97957688 97957688 C T MIR135A2 RNA 0.18 TCGA-3N-A9WC-06 13 101714440 101714440 C T NALCN Silent p.R1545R 0.17 TCGA-3N-A9WC-06 13 101721170 101721170 G A NALCN Missense_Mutation p.P1403S 0.20 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 13 106118644 106118644 G A DAOA Missense_Mutation p.E3K 0.32 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-3N-A9WC-06 13 110826874 110826874 C T COL4A1 Splice_Site p.X1109_splice 0.36 TCGA-3N-A9WC-06 13 19997243 19997243 G A TPTE2 Missense_Mutation p.P510S 0.35 tolerated(0.64) benign(0.03) TCGA-3N-A9WC-06 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.45 tolerated(0.63) benign(0.006) TCGA-3N-A9WC-06 13 23906653 23906653 G A SACS Missense_Mutation p.R3788C 0.43 probably_damaging(0.995) TCGA-3N-A9WC-06 13 25281188 25281188 G A ATP12A Missense_Mutation p.G739R 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 13 25418900 25418900 G A RNF17 Missense_Mutation p.R981K 0.22 deleterious(0) probably_damaging(0.92) TCGA-3N-A9WC-06 13 25418910 25418910 C T RNF17 Silent p.I984I 0.24 TCGA-3N-A9WC-06 13 26789544 26789544 T G RNF6 Missense_Mutation p.N159H 0.32 tolerated(0.49) possibly_damaging(0.832) TCGA-3N-A9WC-06 13 28626768 28626768 C T FLT3 Missense_Mutation p.M176I 0.23 tolerated(0.43) benign(0.002) TCGA-3N-A9WC-06 13 29599522 29599522 C T MTUS2 Silent p.F239F 0.20 TCGA-3N-A9WC-06 13 31232960 31232960 C T USPL1 Nonsense_Mutation p.R916* 0.33 TCGA-3N-A9WC-06 13 33638219 33638219 C T KL Nonsense_Mutation p.R979* 0.29 TCGA-3N-A9WC-06 13 39266375 39266375 C T FREM2 Missense_Mutation p.P1632S 0.25 deleterious(0.03) benign(0.147) TCGA-3N-A9WC-06 13 39425089 39425089 G A FREM2 Missense_Mutation p.E2196K 0.14 tolerated(0.08) benign(0.089) TCGA-3N-A9WC-06 13 39600500 39600500 G A PROSER1 Missense_Mutation p.P132S 0.26 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 13 41834738 41834738 G A MTRF1 Silent p.N102N 0.25 TCGA-3N-A9WC-06 13 41936191 41936191 C T NAA16 Silent p.L479L 0.29 TCGA-3N-A9WC-06 13 42461395 42461395 G A VWA8 Missense_Mutation p.P252S 0.25 tolerated(0.22) probably_damaging(0.998) TCGA-3N-A9WC-06 13 43843666 43843666 C T ENOX1 Silent p.L498L 0.31 TCGA-3N-A9WC-06 13 46287692 46287692 G A SPERT Missense_Mutation p.E178K 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-3N-A9WC-06 13 48523624 48523624 A G SUCLA2 Silent p.L408L 0.22 TCGA-3N-A9WC-06 13 50092185 50092185 C T PHF11 Missense_Mutation p.T119I 0.14 tolerated(0.06) probably_damaging(0.967) TCGA-3N-A9WC-06 13 50092186 50092186 C T PHF11 Silent p.T119T 0.14 TCGA-3N-A9WC-06 13 52534367 52534367 G A ATP7B Nonsense_Mutation p.Q680* 0.21 TCGA-3N-A9WC-06 13 52548465 52548465 G A ATP7B Silent p.A297A 0.43 TCGA-3N-A9WC-06 13 52646104 52646104 C T NEK5 Missense_Mutation p.E634K 0.24 tolerated(0.06) benign(0.035) TCGA-3N-A9WC-06 13 52952903 52952903 G A THSD1 Missense_Mutation p.S401F 0.28 deleterious(0.02) possibly_damaging(0.713) TCGA-3N-A9WC-06 13 58208015 58208015 G A PCDH17 Silent p.R445R 0.13 TCGA-3N-A9WC-06 13 70293595 70293595 C T KLHL1 Missense_Mutation p.G641R 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WC-06 13 86369299 86369299 C T SLITRK6 Missense_Mutation p.E449K 0.21 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 13 86369346 86369346 C T SLITRK6 Missense_Mutation p.G433D 0.21 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 13 86369491 86369491 C T SLITRK6 Missense_Mutation p.E385K 0.26 deleterious(0.03) benign(0.11) TCGA-3N-A9WC-06 13 88328004 88328004 G A SLITRK5 Missense_Mutation p.E121K 0.30 tolerated(0.36) benign(0.074) TCGA-3N-A9WC-06 14 102699020 102699020 G A MOK Missense_Mutation p.P240S 0.38 tolerated(0.09) possibly_damaging(0.8) TCGA-3N-A9WC-06 14 105061461 105061461 C T TMEM179 Missense_Mutation p.G188E 0.33 tolerated_low_confidence(0.09) benign(0.028) TCGA-3N-A9WC-06 14 105609246 105609246 G A JAG2 Missense_Mutation p.P1168L 0.70 tolerated(0.59) probably_damaging(0.999) TCGA-3N-A9WC-06 14 105609247 105609247 G A JAG2 Missense_Mutation p.P1168S 0.70 tolerated(0.49) probably_damaging(0.998) TCGA-3N-A9WC-06 14 106091354 106091354 G A IGHG4 Silent p.Y180Y 0.23 TCGA-3N-A9WC-06 14 106235703 106235703 G A IGHG3 Silent p.F335F 0.39 TCGA-3N-A9WC-06 14 106330028 106330028 G A IGHJ5 Silent p.S15S 0.36 TCGA-3N-A9WC-06 14 106552522 106552522 G A IGHV3-9 Silent p.L39L 0.41 TCGA-3N-A9WC-06 14 106866547 106866547 G A IGHV3-38 Silent p.S69S 0.14 TCGA-3N-A9WC-06 14 106963093 106963093 C T IGHV1-45 Silent p.A63A 0.42 TCGA-3N-A9WC-06 14 20216002 20216002 C T OR4Q3 Missense_Mutation p.P139L 0.32 tolerated(0.13) benign(0) TCGA-3N-A9WC-06 14 22038047 22038047 G A OR10G3 Missense_Mutation p.P277S 0.28 tolerated(0.32) possibly_damaging(0.875) TCGA-3N-A9WC-06 14 22038048 22038048 G A OR10G3 Silent p.V276V 0.27 TCGA-3N-A9WC-06 14 22363023 22363023 C T TRAV8-4 Missense_Mutation p.L52F 0.46 deleterious(0.02) probably_damaging(0.927) TCGA-3N-A9WC-06 14 22392566 22392566 G A TRAV14DV4 Missense_Mutation p.G30E 0.33 TCGA-3N-A9WC-06 14 22476278 22476278 C T TRAV19 Missense_Mutation p.R70C 0.50 deleterious(0.05) benign(0.105) TCGA-3N-A9WC-06 14 23374650 23374650 A T RBM23 Missense_Mutation p.D156E 0.51 tolerated(0.15) benign(0.001) TCGA-3N-A9WC-06 14 23502735 23502735 C A PSMB5 Missense_Mutation p.R116L 0.44 deleterious(0) probably_damaging(0.967) TCGA-3N-A9WC-06 14 24839380 24839380 C T NFATC4 Missense_Mutation p.S322F 0.44 deleterious(0) probably_damaging(0.947) TCGA-3N-A9WC-06 14 24975281 24975281 G A CMA1 Missense_Mutation p.L185F 0.35 tolerated(0.61) benign(0.18) TCGA-3N-A9WC-06 14 24975283 24975283 T A CMA1 Missense_Mutation p.N184I 0.30 tolerated(0.15) possibly_damaging(0.901) TCGA-3N-A9WC-06 14 31589072 31589072 C T HECTD1 Missense_Mutation p.E1747K 0.55 tolerated(0.36) possibly_damaging(0.636) TCGA-3N-A9WC-06 14 33292535 33292535 C T AKAP6 Missense_Mutation p.P1839L 0.23 tolerated(0.18) benign(0.146) TCGA-3N-A9WC-06 14 35649881 35649881 T C KIAA0391 Silent p.L391L 0.28 TCGA-3N-A9WC-06 14 36768314 36768314 G A MBIP Missense_Mutation p.S337F 0.37 deleterious(0) possibly_damaging(0.843) TCGA-3N-A9WC-06 14 42355873 42355873 G A LRFN5 Silent p.V15V 0.19 TCGA-3N-A9WC-06 14 51376711 51376711 C T PYGL Missense_Mutation p.M693I 0.36 deleterious(0) probably_damaging(0.985) TCGA-3N-A9WC-06 14 58055985 58055985 G A SLC35F4 Missense_Mutation p.S215F 0.29 tolerated(0.71) probably_damaging(0.987) TCGA-3N-A9WC-06 14 61447752 61447752 G A TRMT5 5'UTR 0.31 TCGA-3N-A9WC-06 14 62463005 62463005 C T SYT16 Missense_Mutation p.H90Y 0.22 tolerated_low_confidence(0.25) possibly_damaging(0.659) TCGA-3N-A9WC-06 14 63269187 63269187 G A KCNH5 Missense_Mutation p.A561V 0.31 deleterious(0) benign(0.02) TCGA-3N-A9WC-06 14 65208865 65208865 C T PLEKHG3 Missense_Mutation p.P821L 0.33 deleterious(0.01) benign(0.3) TCGA-3N-A9WC-06 14 69341640 69341640 G A ACTN1 Missense_Mutation p.S894F 0.39 deleterious(0) benign(0.248) TCGA-3N-A9WC-06 14 70497012 70497012 G A SMOC1 3'UTR 0.40 TCGA-3N-A9WC-06 14 70713500 70713500 C T ADAM21P1 RNA 0.49 TCGA-3N-A9WC-06 14 91779458 91779458 G A CCDC88C Missense_Mutation p.T901I 0.43 deleterious(0) benign(0.076) TCGA-3N-A9WC-06 14 91805635 91805635 C T CCDC88C Missense_Mutation p.V266I 0.42 tolerated(0.47) benign(0.044) TCGA-3N-A9WC-06 14 93180205 93180205 G A LGMN Missense_Mutation p.T169I 0.46 deleterious(0.01) possibly_damaging(0.808) TCGA-3N-A9WC-06 14 94754718 94754718 C T SERPINA10 Silent p.L299L 0.31 TCGA-3N-A9WC-06 14 94930969 94930969 G A SERPINA9 Intron 0.56 TCGA-3N-A9WC-06 14 94964215 94964215 G A SERPINA12 Nonsense_Mutation p.Q174* 0.46 TCGA-3N-A9WC-06 14 96707285 96707285 A T BDKRB2 Missense_Mutation p.N207I 0.35 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 14 96707286 96707286 C T BDKRB2 Silent p.N207N 0.35 TCGA-3N-A9WC-06 15 100537772 100537772 G A ADAMTS17 Missense_Mutation p.P872S 0.30 tolerated(0.11) benign(0.024) TCGA-3N-A9WC-06 15 101020224 101020224 G A CERS3 Silent p.I145I 0.32 TCGA-3N-A9WC-06 15 101606368 101606368 C T LRRK1 Missense_Mutation p.A1909V 0.13 tolerated(0.13) probably_damaging(0.999) TCGA-3N-A9WC-06 15 101606369 101606369 C T LRRK1 Silent p.A1909A 0.13 TCGA-3N-A9WC-06 15 101872188 101872188 G C PCSK6 Missense_Mutation p.P635R 0.21 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 15 102462414 102462414 C T OR4F4 Silent p.R283R 0.17 TCGA-3N-A9WC-06 15 20649560 20649560 C T HERC2P3 RNA 0.16 TCGA-3N-A9WC-06 15 22332695 22332695 C T RP11-69H14.6 RNA 0.15 TCGA-3N-A9WC-06 15 23445372 23445372 C T AC100757.1 3'Flank 0.19 TCGA-3N-A9WC-06 15 23811327 23811327 C T MKRN3 Missense_Mutation p.S133L 0.26 tolerated(0.68) benign(0.002) TCGA-3N-A9WC-06 15 24922552 24922552 G A NPAP1 Missense_Mutation p.R513K 0.34 tolerated(1) benign(0.003) TCGA-3N-A9WC-06 15 24923674 24923674 C T NPAP1 Missense_Mutation p.S887F 0.32 deleterious(0.03) possibly_damaging(0.85) TCGA-3N-A9WC-06 15 25324133 25324133 C T SNORD116-12 3'Flank 0.28 TCGA-3N-A9WC-06 15 25328619 25328619 G A SNORD116-18 5'Flank 0.21 TCGA-3N-A9WC-06 15 25449562 25449562 C T SNORD115-19 RNA 0.29 TCGA-3N-A9WC-06 15 25486959 25486959 G A SNORD115-39 RNA 0.27 TCGA-3N-A9WC-06 15 25490451 25490451 G A SNORD115-40 3'Flank 0.33 TCGA-3N-A9WC-06 15 25523495 25523495 G A SNORD109B RNA 0.14 TCGA-3N-A9WC-06 15 25953190 25953190 G A ATP10A Silent p.S836S 0.27 TCGA-3N-A9WC-06 15 28483293 28483293 G A HERC2 Silent p.S1273S 0.23 TCGA-3N-A9WC-06 15 32928130 32928130 C T ARHGAP11A Intron 0.19 TCGA-3N-A9WC-06 15 33926925 33926925 C T RYR3 Nonsense_Mutation p.Q1056* 0.24 TCGA-3N-A9WC-06 15 33927929 33927929 G A RYR3 Missense_Mutation p.G1097E 0.20 probably_damaging(1) TCGA-3N-A9WC-06 15 33955791 33955791 G A RYR3 Silent p.E1824E 0.18 TCGA-3N-A9WC-06 15 34654808 34654808 G A LPCAT4 Missense_Mutation p.L284F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WC-06 15 35086934 35086934 C T ACTC1 Missense_Mutation p.D26N 0.26 deleterious_low_confidence(0.02) benign(0.083) TCGA-3N-A9WC-06 15 39544333 39544333 C T C15orf54 5'UTR 0.35 TCGA-3N-A9WC-06 15 40916061 40916061 C T CASC5 Missense_Mutation p.S1226F 0.29 tolerated(0.16) benign(0.325) TCGA-3N-A9WC-06 15 41105054 41105054 C T ZFYVE19 Silent p.A328A 0.25 TCGA-3N-A9WC-06 15 41549131 41549131 C T CHP1 Missense_Mutation p.P55L 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-3N-A9WC-06 15 41770782 41770782 C T RTF1 Missense_Mutation p.P593S 0.30 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 15 42133720 42133720 G A PLA2G4B Silent p.R378R 0.09 TCGA-3N-A9WC-06 15 42139844 42139844 C T PLA2G4B Intron 0.29 TCGA-3N-A9WC-06 15 42173383 42173383 G A SPTBN5 Missense_Mutation p.P836L 0.30 benign(0.083) TCGA-3N-A9WC-06 15 43748861 43748861 G A TP53BP1 Nonsense_Mutation p.Q649* 0.20 TCGA-3N-A9WC-06 15 45047287 45047287 C T TRIM69 Nonsense_Mutation p.Q66* 0.22 TCGA-3N-A9WC-06 15 45388259 45388259 C T DUOX2 Splice_Site p.X1283_splice 0.26 TCGA-3N-A9WC-06 15 45559662 45559662 C T SLC28A2 Missense_Mutation p.P318S 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 15 49775397 49775397 G A FGF7 Silent p.G112G 0.29 TCGA-3N-A9WC-06 15 50171585 50171585 C T ATP8B4 Silent p.G923G 0.23 TCGA-3N-A9WC-06 15 50534591 50534591 G A HDC Missense_Mutation p.P619S 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3N-A9WC-06 15 51520096 51520096 G A CYP19A1 Missense_Mutation p.H111Y 0.38 deleterious(0.05) probably_damaging(0.945) TCGA-3N-A9WC-06 15 51535122 51535122 G A CYP19A1 5'UTR 0.24 TCGA-3N-A9WC-06 15 52574984 52574984 C T MYO5C Missense_Mutation p.G45R 0.17 tolerated(0.06) probably_damaging(0.972) TCGA-3N-A9WC-06 15 52901489 52901489 G A FAM214A Missense_Mutation p.S541F 0.23 deleterious(0.03) possibly_damaging(0.852) TCGA-3N-A9WC-06 15 53997246 53997246 G A WDR72 Silent p.I429I 0.32 TCGA-3N-A9WC-06 15 54306754 54306754 G A UNC13C Missense_Mutation p.D552N 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-3N-A9WC-06 15 54542474 54542474 T C UNC13C Missense_Mutation p.S1094P 0.32 tolerated_low_confidence(0.09) benign(0.312) TCGA-3N-A9WC-06 15 54916042 54916042 C T UNC13C Silent p.P2083P 0.28 TCGA-3N-A9WC-06 15 56923869 56923869 G A ZNF280D Missense_Mutation p.P923S 0.23 deleterious(0) possibly_damaging(0.871) TCGA-3N-A9WC-06 15 57544625 57544625 C T TCF12 Nonsense_Mutation p.R399* 0.29 TCGA-3N-A9WC-06 15 57745960 57745960 G A CGNL1 Missense_Mutation p.D712N 0.19 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 15 59911287 59911287 G A GCNT3 Missense_Mutation p.D284N 0.28 tolerated(0.34) benign(0.21) TCGA-3N-A9WC-06 15 60907117 60907117 A T RORA Intron 0.33 TCGA-3N-A9WC-06 15 62199462 62199462 C T VPS13C Splice_Site p.X3035_splice 0.26 TCGA-3N-A9WC-06 15 62994339 62994339 C T TLN2 Silent p.A615A 0.24 TCGA-3N-A9WC-06 15 64041721 64041721 G A HERC1 Silent p.A688A 0.31 TCGA-3N-A9WC-06 15 64669079 64669079 G A KIAA0101 Silent p.N51N 0.33 TCGA-3N-A9WC-06 15 65347555 65347555 G A RASL12 Silent p.F161F 0.33 TCGA-3N-A9WC-06 15 66612995 66612995 C T DIS3L Silent p.I417I 0.22 TCGA-3N-A9WC-06 15 73552667 73552667 C T NEO1 Silent p.S753S 0.24 TCGA-3N-A9WC-06 15 74032453 74032453 G A C15orf59 Silent p.G229G 0.41 TCGA-3N-A9WC-06 15 75500360 75500360 C T C15orf39 Silent p.L657L 0.28 TCGA-3N-A9WC-06 15 82512425 82512425 G A EFTUD1 Missense_Mutation p.P480S 0.22 tolerated(0.41) benign(0.001) TCGA-3N-A9WC-06 15 83349375 83349375 G A AP3B2 Missense_Mutation p.H302Y 0.15 tolerated(0.08) benign(0.444) TCGA-3N-A9WC-06 15 83725278 83725278 C T BTBD1 Missense_Mutation p.V141I 0.26 tolerated(0.84) benign(0.381) TCGA-3N-A9WC-06 15 83791518 83791518 G A TM6SF1 Missense_Mutation p.G164E 0.35 deleterious(0) probably_damaging(0.985) TCGA-3N-A9WC-06 15 83826704 83826704 C T HDGFRP3 Missense_Mutation p.G84E 0.30 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 15 88423551 88423551 C T NTRK3 Missense_Mutation p.E762K 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 15 89392832 89392832 C T ACAN Silent p.L632L 0.19 TCGA-3N-A9WC-06 15 90022552 90022552 C T RHCG Splice_Site p.X279_splice 0.10 TCGA-3N-A9WC-06 15 91449217 91449217 C T MAN2A2 Silent p.I226I 0.31 TCGA-3N-A9WC-06 15 91449241 91449241 C T MAN2A2 Silent p.V234V 0.34 TCGA-3N-A9WC-06 15 91769824 91769824 C T SV2B Missense_Mutation p.L111F 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-3N-A9WC-06 16 10273968 10273968 C T GRIN2A Missense_Mutation p.G101R 0.21 tolerated(0.07) probably_damaging(0.991) TCGA-3N-A9WC-06 16 11038551 11038551 G T CLEC16A 5'UTR 0.36 TCGA-3N-A9WC-06 16 1129474 1129474 C T SSTR5 Silent p.I202I 0.47 TCGA-3N-A9WC-06 16 12662421 12662421 C T SNX29 Missense_Mutation p.P793S 0.15 tolerated_low_confidence(0.16) benign(0.099) TCGA-3N-A9WC-06 16 1278632 1278632 G A TPSB2 3'UTR 0.20 TCGA-3N-A9WC-06 16 1292259 1292259 C T TPSAB1 3'UTR 0.08 TCGA-3N-A9WC-06 16 14983006 14983006 C T NOMO1 Silent p.I1126I 0.22 TCGA-3N-A9WC-06 16 14988878 14988878 C T NOMO1 Silent p.I1156I 0.09 TCGA-3N-A9WC-06 16 1551441 1551441 C T TELO2 Silent p.S434S 0.16 TCGA-3N-A9WC-06 16 15761189 15761189 C T NDE1 Nonsense_Mutation p.R44* 0.23 TCGA-3N-A9WC-06 16 17211650 17211650 C T XYLT1 Missense_Mutation p.E804K 0.27 deleterious(0.01) probably_damaging(0.955) TCGA-3N-A9WC-06 16 19051715 19051715 C T TMC7 Silent p.I428I 0.30 TCGA-3N-A9WC-06 16 19884097 19884097 G A GPRC5B Missense_Mutation p.T24I 0.21 tolerated(0.43) benign(0.032) TCGA-3N-A9WC-06 16 20043120 20043120 G A GPR139 Silent p.H333H 0.38 TCGA-3N-A9WC-06 16 20043572 20043572 G A GPR139 Missense_Mutation p.L183F 0.21 tolerated(0.11) probably_damaging(0.998) TCGA-3N-A9WC-06 16 2028058 2028058 C T TBL3 Silent p.I686I 0.26 TCGA-3N-A9WC-06 16 20387414 20387414 G A PDILT Silent p.P173P 0.41 TCGA-3N-A9WC-06 16 20387415 20387415 G A PDILT Missense_Mutation p.P173L 0.41 deleterious(0.02) possibly_damaging(0.894) TCGA-3N-A9WC-06 16 20548648 20548648 C A ACSM2B Missense_Mutation p.G556W 0.18 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 20748561 20748561 G A THUMPD1 Missense_Mutation p.P235S 0.32 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 20873485 20873485 G A DCUN1D3 Nonsense_Mutation p.R126* 0.18 TCGA-3N-A9WC-06 16 20959853 20959853 G A DNAH3 Silent p.S3765S 0.14 TCGA-3N-A9WC-06 16 20966140 20966140 G A DNAH3 Missense_Mutation p.P3689L 0.24 deleterious(0) probably_damaging(0.928) TCGA-3N-A9WC-06 16 20976249 20976249 C T DNAH3 Missense_Mutation p.R2986Q 0.30 tolerated(0.51) benign(0.028) TCGA-3N-A9WC-06 16 20976362 20976362 G A DNAH3 Silent p.T2948T 0.23 TCGA-3N-A9WC-06 16 20994168 20994168 C T DNAH3 Silent p.R2578R 0.16 TCGA-3N-A9WC-06 16 21272600 21272600 C T CRYM Silent p.E285E 0.31 TCGA-3N-A9WC-06 16 2153555 2153555 G A PKD1 Missense_Mutation p.P2835S 0.20 probably_damaging(0.925) TCGA-3N-A9WC-06 16 2155434 2155434 C T PKD1 Silent p.E2635E 0.30 TCGA-3N-A9WC-06 16 22334229 22334229 C T POLR3E Missense_Mutation p.L349F 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-3N-A9WC-06 16 22444097 22444097 G A RRN3P3 RNA 0.33 TCGA-3N-A9WC-06 16 22444098 22444098 G A RRN3P3 RNA 0.33 TCGA-3N-A9WC-06 16 22545905 22545905 C T NPIPB5 Missense_Mutation p.A534V 0.06 deleterious_low_confidence(0.03) probably_damaging(0.95) TCGA-3N-A9WC-06 16 2259489 2259489 C A BRICD5 Intron 0.30 TCGA-3N-A9WC-06 16 23695351 23695351 C T PLK1 Missense_Mutation p.S326L 0.31 tolerated(0.07) benign(0.007) TCGA-3N-A9WC-06 16 23767487 23767487 C T CHP2 Missense_Mutation p.L109F 0.34 tolerated(0.05) benign(0.005) TCGA-3N-A9WC-06 16 240547 240547 G A LUC7L Missense_Mutation p.R267C 0.33 deleterious(0.04) unknown(0) TCGA-3N-A9WC-06 16 24580568 24580568 C T RBBP6 Missense_Mutation p.P853S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WC-06 16 24834902 24834902 C T TNRC6A Missense_Mutation p.S1888F 0.22 deleterious(0) possibly_damaging(0.794) TCGA-3N-A9WC-06 16 24922863 24922863 G A SLC5A11 3'UTR 0.24 TCGA-3N-A9WC-06 16 2547048 2547048 T A RP11-20I23.1 Missense_Mutation p.I300N 0.36 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 16 2547049 2547049 C T RP11-20I23.1 Silent p.I300I 0.37 TCGA-3N-A9WC-06 16 27078176 27078176 C T C16orf82 RNA 0.34 TCGA-3N-A9WC-06 16 27221475 27221475 C T KDM8 Missense_Mutation p.P49S 0.23 deleterious_low_confidence(0.04) benign(0.121) TCGA-3N-A9WC-06 16 27454351 27454351 G A IL21R Missense_Mutation p.D141N 0.31 tolerated(0.62) benign(0.011) TCGA-3N-A9WC-06 16 29808247 29808247 C T KIF22 Missense_Mutation p.A35V 0.25 tolerated_low_confidence(0.11) benign(0.017) TCGA-3N-A9WC-06 16 30106577 30106577 G A YPEL3 Missense_Mutation p.S76F 0.25 deleterious(0) possibly_damaging(0.465) TCGA-3N-A9WC-06 16 30536951 30536951 G A ZNF768 Silent p.F170F 0.27 TCGA-3N-A9WC-06 16 3075930 3075930 C T THOC6 Missense_Mutation p.S54F 0.22 deleterious(0.01) possibly_damaging(0.866) TCGA-3N-A9WC-06 16 30794866 30794866 G A ZNF629 Silent p.P261P 0.25 TCGA-3N-A9WC-06 16 30991843 30991843 C T SETD1A Silent p.P1482P 0.21 TCGA-3N-A9WC-06 16 31477454 31477454 C T ARMC5 Silent p.L684L 0.25 TCGA-3N-A9WC-06 16 3293274 3293274 G A MEFV Missense_Mutation p.S738F 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 343541 343541 G A AXIN1 Silent p.R711R 0.32 TCGA-3N-A9WC-06 16 46694313 46694313 G A VPS35 3'UTR 0.46 TCGA-3N-A9WC-06 16 46761273 46761273 G A MYLK3 Missense_Mutation p.L597F 0.32 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 47117417 47117417 G A NETO2 Silent p.A431A 0.19 TCGA-3N-A9WC-06 16 47117418 47117418 G A NETO2 Missense_Mutation p.A431V 0.19 deleterious_low_confidence(0.04) benign(0.008) TCGA-3N-A9WC-06 16 4727524 4727524 T A MGRN1 Missense_Mutation p.V339E 0.27 deleterious(0.02) possibly_damaging(0.857) TCGA-3N-A9WC-06 16 49430379 49430379 C T C16orf78 Missense_Mutation p.P147L 0.29 tolerated(0.31) benign(0.01) TCGA-3N-A9WC-06 16 50112760 50112760 T C HEATR3 Missense_Mutation p.M291T 0.33 tolerated(0.55) benign(0) TCGA-3N-A9WC-06 16 5077186 5077186 G A NAGPA Silent p.L430L 0.20 TCGA-3N-A9WC-06 16 51172903 51172903 G A SALL1 Missense_Mutation p.P1077L 0.24 tolerated(0.7) benign(0.007) TCGA-3N-A9WC-06 16 52473267 52473267 G A TOX3 Missense_Mutation p.S534F 0.23 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WC-06 16 53639501 53639501 G A RPGRIP1L Missense_Mutation p.P1243S 0.38 deleterious(0) probably_damaging(0.931) TCGA-3N-A9WC-06 16 55523736 55523736 G A MMP2 Missense_Mutation p.G394R 0.22 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 16 56309869 56309869 G A GNAO1 Missense_Mutation p.G63E 0.33 tolerated(1) benign(0.147) TCGA-3N-A9WC-06 16 56377886 56377886 C T GNAO1 3'UTR 0.32 TCGA-3N-A9WC-06 16 56920350 56920350 G A SLC12A3 Missense_Mutation p.R667Q 0.25 deleterious(0.03) benign(0.001) TCGA-3N-A9WC-06 16 56920351 56920351 G A SLC12A3 Silent p.R667R 0.25 TCGA-3N-A9WC-06 16 56997007 56997007 C T CETP Silent p.L68L 0.44 TCGA-3N-A9WC-06 16 57957188 57957188 C T CNGB1 Silent p.P544P 0.33 TCGA-3N-A9WC-06 16 62055215 62055215 C T CDH8 Silent p.P31P 0.31 TCGA-3N-A9WC-06 16 66430100 66430100 C T CDH5 Silent p.S452S 0.30 TCGA-3N-A9WC-06 16 66757620 66757620 G A DYNC1LI2 3'UTR 0.30 TCGA-3N-A9WC-06 16 67166765 67166765 T C C16orf70 Missense_Mutation p.L134P 0.22 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 16 67281322 67281322 G A FHOD1 5'UTR 0.37 TCGA-3N-A9WC-06 16 67281323 67281323 G A FHOD1 5'UTR 0.28 TCGA-3N-A9WC-06 16 67805940 67805940 G A RANBP10 Missense_Mutation p.P133S 0.20 deleterious(0) possibly_damaging(0.515) TCGA-3N-A9WC-06 16 68156240 68156240 C T NFATC3 Missense_Mutation p.P152S 0.26 deleterious(0.05) benign(0.011) TCGA-3N-A9WC-06 16 68156938 68156938 G T NFATC3 Missense_Mutation p.K384N 0.30 deleterious(0) probably_damaging(0.953) TCGA-3N-A9WC-06 16 68373357 68373357 C T PRMT7 Missense_Mutation p.P213S 0.34 deleterious(0.04) benign(0.222) TCGA-3N-A9WC-06 16 68597661 68597661 C T ZFP90 Missense_Mutation p.S324F 0.28 tolerated(0.72) probably_damaging(0.989) TCGA-3N-A9WC-06 16 68598497 68598497 C T ZFP90 Missense_Mutation p.H603Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 16 70363854 70363854 G A DDX19B Silent p.E302E 0.16 TCGA-3N-A9WC-06 16 70515738 70515738 G A COG4 Silent p.L679L 0.20 TCGA-3N-A9WC-06 16 705299 705299 C T WDR90 Intron 0.32 TCGA-3N-A9WC-06 16 708289 708289 C T WDR90 Missense_Mutation p.T904I 0.30 deleterious(0.03) benign(0.021) TCGA-3N-A9WC-06 16 70942619 70942619 G A HYDIN Missense_Mutation p.S2717F 0.23 benign(0.071) TCGA-3N-A9WC-06 16 70954575 70954575 G A HYDIN Silent p.F2568F 0.53 TCGA-3N-A9WC-06 16 71007821 71007821 C T HYDIN Missense_Mutation p.G1714R 0.14 probably_damaging(0.998) TCGA-3N-A9WC-06 16 71318149 71318149 A C CMTR2 Missense_Mutation p.L559V 0.36 tolerated(0.68) benign(0.002) TCGA-3N-A9WC-06 16 71683886 71683886 G A PHLPP2 Missense_Mutation p.P960L 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 72993244 72993244 G A ZFHX3 Silent p.S267S 0.35 TCGA-3N-A9WC-06 16 72993991 72993991 G A ZFHX3 Silent p.I18I 0.22 TCGA-3N-A9WC-06 16 739205 739205 T C WDR24 Missense_Mutation p.K146E 0.33 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 16 74455138 74455138 C T CLEC18B Missense_Mutation p.G11R 0.12 deleterious_low_confidence(0.04) benign(0.256) TCGA-3N-A9WC-06 16 75563734 75563734 G A CHST5 Silent p.A183A 0.20 TCGA-3N-A9WC-06 16 76569605 76569605 G A CNTNAP4 Silent p.G900G 0.15 TCGA-3N-A9WC-06 16 77398102 77398102 G A ADAMTS18 Missense_Mutation p.L319F 0.21 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 81074951 81074951 C T ATMIN Intron 0.15 TCGA-3N-A9WC-06 16 81241109 81241109 G A PKD1L2 Missense_Mutation p.P298S 0.24 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 16 83065796 83065796 G A CDH13 Silent p.G160G 0.33 TCGA-3N-A9WC-06 16 83998950 83998950 C T OSGIN1 Missense_Mutation p.P258S 0.14 tolerated(0.37) benign(0.043) TCGA-3N-A9WC-06 16 83998951 83998951 C T OSGIN1 Missense_Mutation p.P258L 0.14 tolerated(0.15) benign(0.025) TCGA-3N-A9WC-06 16 84486790 84486790 G A ATP2C2 Silent p.G626G 0.23 TCGA-3N-A9WC-06 16 848706 848706 C T GNG13 3'UTR 0.31 TCGA-3N-A9WC-06 16 85010057 85010057 G A ZDHHC7 Silent p.S310S 0.24 TCGA-3N-A9WC-06 16 85010058 85010058 G A ZDHHC7 Missense_Mutation p.S310F 0.23 deleterious(0.01) probably_damaging(0.921) TCGA-3N-A9WC-06 16 85953803 85953803 C T IRF8 Silent p.P359P 0.33 TCGA-3N-A9WC-06 16 87960524 87960524 G A CA5A Missense_Mutation p.S57F 0.17 deleterious(0.01) possibly_damaging(0.553) TCGA-3N-A9WC-06 16 89595976 89595976 T G SPG7 Missense_Mutation p.F284V 0.19 tolerated(0.07) benign(0.025) TCGA-3N-A9WC-06 16 9858331 9858331 C T GRIN2A Missense_Mutation p.D1024N 0.25 tolerated_low_confidence(0.52) benign(0.003) TCGA-3N-A9WC-06 16 9892263 9892263 C T GRIN2A Missense_Mutation p.E743K 0.38 deleterious(0.02) benign(0.389) TCGA-3N-A9WC-06 17 10348566 10348566 C T MYH4 Silent p.K1761K 0.38 TCGA-3N-A9WC-06 17 10352038 10352038 C T MYH4 Silent p.K1476K 0.32 TCGA-3N-A9WC-06 17 10397730 10397730 C T MYH1 Missense_Mutation p.D1870N 0.33 deleterious(0.01) probably_damaging(0.923) TCGA-3N-A9WC-06 17 10436885 10436885 C T MYH2 Missense_Mutation p.E749K 0.30 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 17 12655802 12655802 C G MYOCD Missense_Mutation p.D399E 0.28 tolerated(1) benign(0.046) TCGA-3N-A9WC-06 17 15441363 15441363 G A TVP23C Intron 0.35 TCGA-3N-A9WC-06 17 16593727 16593727 G A CCDC144A Missense_Mutation p.G5S 0.20 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-3N-A9WC-06 17 16612159 16612159 T C CCDC144A Missense_Mutation p.I263T 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-3N-A9WC-06 17 16734758 16734758 C T KRT16P2 RNA 0.21 TCGA-3N-A9WC-06 17 18036607 18036607 G A MYO15A Silent p.E1463E 0.29 TCGA-3N-A9WC-06 17 18036608 18036608 G A MYO15A Missense_Mutation p.V1464M 0.27 unknown(0) TCGA-3N-A9WC-06 17 18141811 18141811 C T LLGL1 Silent p.P698P 0.26 TCGA-3N-A9WC-06 17 18539848 18539848 C T TBC1D28 Missense_Mutation p.G187E 0.28 tolerated_low_confidence(0.12) probably_damaging(0.977) TCGA-3N-A9WC-06 17 18539849 18539849 C T TBC1D28 Missense_Mutation p.G187R 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.657) TCGA-3N-A9WC-06 17 18565916 18565916 G A ZNF286B Silent p.C301C 0.23 TCGA-3N-A9WC-06 17 18927599 18927599 C T GRAP Missense_Mutation p.D133N 0.21 tolerated(0.17) possibly_damaging(0.548) TCGA-3N-A9WC-06 17 19250509 19250509 A G B9D1 Intron 0.30 TCGA-3N-A9WC-06 17 25910042 25910042 C T KSR1 Silent p.F160F 0.58 TCGA-3N-A9WC-06 17 26091106 26091106 G A NOS2 Silent p.F831F 0.24 TCGA-3N-A9WC-06 17 27591568 27591568 G A NUFIP2 Missense_Mutation p.P693S 0.27 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 17 29314998 29314998 C T RNF135 Missense_Mutation p.P185S 0.17 tolerated(0.18) benign(0.02) TCGA-3N-A9WC-06 17 29314999 29314999 C T RNF135 Missense_Mutation p.P185L 0.17 tolerated(0.07) benign(0.029) TCGA-3N-A9WC-06 17 31065281 31065281 A T MYO1D Missense_Mutation p.L579H 0.27 deleterious(0) possibly_damaging(0.853) TCGA-3N-A9WC-06 17 31439010 31439010 C T ASIC2 Missense_Mutation p.G262R 0.37 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 17 3195229 3195229 G A OR3A1 Silent p.L216L 0.52 TCGA-3N-A9WC-06 17 3195591 3195591 G A OR3A1 Missense_Mutation p.P96S 0.47 tolerated(1) benign(0.011) TCGA-3N-A9WC-06 17 33749938 33749938 C T SLFN12 Missense_Mutation p.R37K 0.19 tolerated(0.16) benign(0.192) TCGA-3N-A9WC-06 17 33802361 33802361 C T SLFN12L Missense_Mutation p.D450N 0.14 deleterious(0.03) probably_damaging(0.948) TCGA-3N-A9WC-06 17 33807102 33807102 C T SLFN12L Missense_Mutation p.E43K 0.18 tolerated(0.11) probably_damaging(0.975) TCGA-3N-A9WC-06 17 34233485 34233485 T C AC015849.16 RNA 0.19 TCGA-3N-A9WC-06 17 34234315 34234315 C T AC015849.16 RNA 0.24 TCGA-3N-A9WC-06 17 34257703 34257703 G A RDM1 Missense_Mutation p.P10L 0.19 deleterious(0.03) possibly_damaging(0.88) TCGA-3N-A9WC-06 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.07 TCGA-3N-A9WC-06 17 34641596 34641596 G A CCL4L2 3'UTR 0.29 TCGA-3N-A9WC-06 17 35614733 35614733 T A ACACA Missense_Mutation p.N573I 0.24 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 17 36997501 36997501 C T C17orf98 Missense_Mutation p.D48N 0.21 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 17 3769067 3769067 G A CAMKK1 3'UTR 0.60 TCGA-3N-A9WC-06 17 38652431 38652431 G A TNS4 Missense_Mutation p.P83S 0.24 tolerated(0.13) benign(0.015) TCGA-3N-A9WC-06 17 38711336 38711336 G T CCR7 Silent p.I265I 0.26 TCGA-3N-A9WC-06 17 39036378 39036378 C T KRT20 Missense_Mutation p.E256K 0.26 tolerated(0.3) benign(0.021) TCGA-3N-A9WC-06 17 39619228 39619228 C T KRT32 Missense_Mutation p.M357I 0.28 deleterious(0) benign(0.037) TCGA-3N-A9WC-06 17 39644531 39644531 C T KRT36 Silent p.K221K 0.17 TCGA-3N-A9WC-06 17 39674849 39674849 G A KRT15 Silent p.F77F 0.27 TCGA-3N-A9WC-06 17 40762497 40762497 G A TUBG1 Silent p.V73V 0.23 TCGA-3N-A9WC-06 17 40767063 40767063 C T TUBG1 3'UTR 0.21 TCGA-3N-A9WC-06 17 41003292 41003292 C T AOC3 5'UTR 0.27 TCGA-3N-A9WC-06 17 41003978 41003978 G A AOC3 Silent p.R206R 0.29 TCGA-3N-A9WC-06 17 41341074 41341074 C T NBR1 Missense_Mutation p.P140S 0.28 tolerated(0.47) benign(0.004) TCGA-3N-A9WC-06 17 41925952 41925952 G A CD300LG Missense_Mutation p.E24K 0.28 deleterious(0.03) possibly_damaging(0.768) TCGA-3N-A9WC-06 17 42266765 42266765 C T TMUB2 Silent p.L137L 0.25 TCGA-3N-A9WC-06 17 42744119 42744119 G A C17orf104 Missense_Mutation p.M280I 0.17 tolerated(1) benign(0.002) TCGA-3N-A9WC-06 17 42800320 42800320 C T DBF4B Missense_Mutation p.S52F 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-3N-A9WC-06 17 42828490 42828490 C T DBF4B Missense_Mutation p.P573S 0.17 tolerated_low_confidence(0.07) benign(0.009) TCGA-3N-A9WC-06 17 43196224 43196224 G A PLCD3 Missense_Mutation p.R291C 0.27 tolerated(0.18) benign(0.005) TCGA-3N-A9WC-06 17 43216478 43216478 T C ACBD4 Missense_Mutation p.C260R 0.24 deleterious_low_confidence(0.03) benign(0.012) TCGA-3N-A9WC-06 17 43332912 43332912 G A SPATA32 Missense_Mutation p.H213Y 0.24 deleterious(0.05) benign(0.005) TCGA-3N-A9WC-06 17 43482409 43482409 G A ARHGAP27 Missense_Mutation p.P36S 0.27 tolerated(0.15) possibly_damaging(0.725) TCGA-3N-A9WC-06 17 45822394 45822394 G A TBX21 Missense_Mutation p.E424K 0.32 tolerated(0.68) benign(0.081) TCGA-3N-A9WC-06 17 4711286 4711286 G A PLD2 Silent p.R39R 0.59 TCGA-3N-A9WC-06 17 47241484 47241484 C T B4GALNT2 Silent p.T327T 0.28 TCGA-3N-A9WC-06 17 47284004 47284004 G A GNGT2 3'UTR 0.16 TCGA-3N-A9WC-06 17 4836677 4836677 G A GP1BA Missense_Mutation p.A260T 0.39 tolerated(0.51) benign(0.001) TCGA-3N-A9WC-06 17 48538653 48538653 C T ACSF2 Silent p.D125D 0.17 TCGA-3N-A9WC-06 17 48538654 48538654 C T ACSF2 Missense_Mutation p.R126W 0.17 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 17 48606092 48606092 C T MYCBPAP Missense_Mutation p.P858L 0.42 tolerated(0.09) benign(0.164) TCGA-3N-A9WC-06 17 48701394 48701394 C T CACNA1G Missense_Mutation p.P2063S 0.22 tolerated(0.4) benign(0) TCGA-3N-A9WC-06 17 48762133 48762133 G A ABCC3 Missense_Mutation p.E1393K 0.26 deleterious(0.03) benign(0.077) TCGA-3N-A9WC-06 17 4925975 4925975 C T KIF1C Missense_Mutation p.R867C 0.58 deleterious_low_confidence(0) benign(0.136) TCGA-3N-A9WC-06 17 53045783 53045783 C T COX11 Silent p.K75K 0.30 TCGA-3N-A9WC-06 17 5359478 5359478 G A DHX33 Silent p.L292L 0.25 TCGA-3N-A9WC-06 17 5421188 5421188 C T NLRP1 Missense_Mutation p.R1312Q 0.36 tolerated(0.08) probably_damaging(0.968) TCGA-3N-A9WC-06 17 54428271 54428271 C T ANKFN1 Silent p.F114F 0.40 TCGA-3N-A9WC-06 17 54559872 54559872 G A ANKFN1 Silent p.Q752Q 0.22 TCGA-3N-A9WC-06 17 56280611 56280611 G A EPX Silent p.G626G 0.26 TCGA-3N-A9WC-06 17 56344736 56344736 G A LPO Missense_Mutation p.D574N 0.21 tolerated(0.06) benign(0.02) TCGA-3N-A9WC-06 17 56357246 56357246 C T MPO Silent p.L126L 0.32 TCGA-3N-A9WC-06 17 56557419 56557419 G A HSF5 Missense_Mutation p.P254S 0.11 tolerated(0.06) possibly_damaging(0.851) TCGA-3N-A9WC-06 17 57057540 57057540 T C PPM1E Silent p.A472A 0.23 TCGA-3N-A9WC-06 17 57196787 57196787 A C SKA2 Missense_Mutation p.F64V 0.20 tolerated(0.4) benign(0.417) TCGA-3N-A9WC-06 17 57196788 57196788 G A SKA2 Silent p.R63R 0.20 TCGA-3N-A9WC-06 17 57270949 57270949 G A PRR11 Missense_Mutation p.G167R 0.24 tolerated(0.33) benign(0.06) TCGA-3N-A9WC-06 17 59667929 59667929 C T NACA2 Missense_Mutation p.D205N 0.26 deleterious(0.01) possibly_damaging(0.584) TCGA-3N-A9WC-06 17 5984042 5984042 C T WSCD1 Missense_Mutation p.L22F 0.28 tolerated(0.35) probably_damaging(0.999) TCGA-3N-A9WC-06 17 60483859 60483859 C T EFCAB3 Silent p.F221F 0.22 TCGA-3N-A9WC-06 17 60493450 60493450 G A EFCAB3 Silent p.G411G 0.16 TCGA-3N-A9WC-06 17 61497877 61497877 G A TANC2 Missense_Mutation p.G1512R 0.21 tolerated_low_confidence(0.07) benign(0.03) TCGA-3N-A9WC-06 17 61949591 61949591 G A CSH2 Silent p.L183L 0.20 TCGA-3N-A9WC-06 17 61949987 61949987 C T CSH2 Missense_Mutation p.D136N 0.16 deleterious(0.03) benign(0.303) TCGA-3N-A9WC-06 17 62024466 62024466 G T SCN4A Missense_Mutation p.S1127Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WC-06 17 62082728 62082728 C T ICAM2 Missense_Mutation p.D23N 0.35 deleterious(0.03) benign(0.07) TCGA-3N-A9WC-06 17 62082729 62082729 C T ICAM2 Silent p.S22S 0.36 TCGA-3N-A9WC-06 17 63633265 63633265 T C CEP112 Silent p.E947E 0.29 TCGA-3N-A9WC-06 17 64128799 64128799 G A CEP112 Missense_Mutation p.P185S 0.18 tolerated(0.48) benign(0.002) TCGA-3N-A9WC-06 17 66928609 66928609 C T ABCA8 Missense_Mutation p.G206E 0.34 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 17 67149680 67149680 C T ABCA10 Missense_Mutation p.E1325K 0.49 tolerated(0.34) benign(0.014) TCGA-3N-A9WC-06 17 67212463 67212463 G A ABCA10 Silent p.F189F 0.16 TCGA-3N-A9WC-06 17 6903694 6903694 G A ALOX12 Missense_Mutation p.G283R 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-3N-A9WC-06 17 72246149 72246149 C T TTYH2 Silent p.P335P 0.21 TCGA-3N-A9WC-06 17 72443119 72443119 A G GPRC5C Silent p.K471K 0.22 TCGA-3N-A9WC-06 17 72469692 72469692 A T CD300A Nonsense_Mutation p.K20* 0.52 TCGA-3N-A9WC-06 17 72588856 72588856 C T C17orf77 Missense_Mutation p.S224F 0.20 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WC-06 17 72613289 72613289 G A CD300E Missense_Mutation p.P119L 0.18 tolerated(0.07) benign(0.319) TCGA-3N-A9WC-06 17 72619772 72619772 C T CD300E 5'UTR 0.24 TCGA-3N-A9WC-06 17 72926963 72926963 C T OTOP2 Silent p.I411I 0.15 TCGA-3N-A9WC-06 17 72945430 72945430 C T OTOP3 Silent p.I570I 0.28 TCGA-3N-A9WC-06 17 73000034 73000034 C A CDR2L Missense_Mutation p.H421Q 0.40 tolerated(0.95) benign(0.382) TCGA-3N-A9WC-06 17 73239587 73239587 G A GGA3 Missense_Mutation p.T122I 0.25 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 17 73484890 73484890 C T KIAA0195 Silent p.S221S 0.48 TCGA-3N-A9WC-06 17 73484947 73484947 C T KIAA0195 Silent p.H240H 0.17 TCGA-3N-A9WC-06 17 73484948 73484948 C A KIAA0195 Silent p.R241R 0.17 TCGA-3N-A9WC-06 17 73725443 73725443 G A ITGB4 Missense_Mutation p.G222R 0.17 tolerated(0.12) benign(0.098) TCGA-3N-A9WC-06 17 73809224 73809224 C T UNK Nonsense_Mutation p.Q230* 0.19 TCGA-3N-A9WC-06 17 73910856 73910856 C T FBF1 Missense_Mutation p.R914Q 0.64 deleterious(0.03) probably_damaging(0.922) TCGA-3N-A9WC-06 17 73998477 73998477 C T CDK3 Missense_Mutation p.P155L 0.16 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 17 74004370 74004370 G A EVPL Missense_Mutation p.S1639L 0.28 deleterious(0.02) benign(0.23) TCGA-3N-A9WC-06 17 74053518 74053518 A - SRP68 Frame_Shift_Del p.L315* 0.20 TCGA-3N-A9WC-06 17 74383389 74383389 G A SPHK1 Missense_Mutation p.G379R 0.14 deleterious(0.03) benign(0.108) TCGA-3N-A9WC-06 17 74732309 74732309 G A SRSF2 Silent p.S200S 0.51 TCGA-3N-A9WC-06 17 74732310 74732310 G A SRSF2 Missense_Mutation p.S200F 0.52 deleterious(0.01) unknown(0) TCGA-3N-A9WC-06 17 76045883 76045883 C T TNRC6C Missense_Mutation p.S247F 0.26 deleterious(0) probably_damaging(0.956) TCGA-3N-A9WC-06 17 76528651 76528651 C G DNAH17 Silent p.G1009G 0.23 TCGA-3N-A9WC-06 17 76794580 76794580 G A USP36 Silent p.F1098F 0.19 TCGA-3N-A9WC-06 17 76968456 76968456 G A LGALS3BP Silent p.A320A 0.18 TCGA-3N-A9WC-06 17 78338285 78338285 C T RNF213 Silent p.L3935L 0.12 TCGA-3N-A9WC-06 17 78399335 78399335 C T ENDOV Missense_Mutation p.S210F 0.55 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 17 79250834 79250834 G A SLC38A10 Silent p.V242V 0.11 TCGA-3N-A9WC-06 17 79419763 79419763 C T RP11-1055B8.7 Missense_Mutation p.S1444L 0.17 benign(0.018) TCGA-3N-A9WC-06 17 79477971 79477971 G A ACTG1 Silent p.P322P 0.15 TCGA-3N-A9WC-06 17 79632494 79632494 G A OXLD1 Missense_Mutation p.H61Y 0.17 tolerated(0.35) possibly_damaging(0.67) TCGA-3N-A9WC-06 17 79671340 79671340 C T SLC25A10 Silent p.A47A 0.16 TCGA-3N-A9WC-06 17 80151886 80151886 G A CCDC57 Nonsense_Mutation p.Q250* 0.35 TCGA-3N-A9WC-06 17 80282673 80282673 T A SECTM1 Missense_Mutation p.H63L 0.15 tolerated(0.62) benign(0.001) TCGA-3N-A9WC-06 18 10471974 10471974 C T APCDD1 Silent p.L230L 0.28 TCGA-3N-A9WC-06 18 10671666 10671666 C T PIEZO2 Missense_Mutation p.R2706Q 0.15 deleterious(0) possibly_damaging(0.822) TCGA-3N-A9WC-06 18 14183985 14183985 C T ANKRD20A5P RNA 0.18 TCGA-3N-A9WC-06 18 14803738 14803738 C T ANKRD30B Silent p.F733F 0.24 TCGA-3N-A9WC-06 18 18595437 18595437 G A ROCK1 Silent p.T455T 0.19 TCGA-3N-A9WC-06 18 18595438 18595438 G A ROCK1 Missense_Mutation p.T455I 0.19 tolerated(0.21) benign(0.042) TCGA-3N-A9WC-06 18 21338406 21338406 C T LAMA3 Missense_Mutation p.R332C 0.29 possibly_damaging(0.768) TCGA-3N-A9WC-06 18 23724572 23724572 C T PSMA8 Missense_Mutation p.S51F 0.28 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 18 28602349 28602349 G A DSC3 Missense_Mutation p.P299S 0.33 tolerated(0.06) probably_damaging(1) TCGA-3N-A9WC-06 18 28669485 28669485 G A DSC2 Missense_Mutation p.R183W 0.24 deleterious(0.04) possibly_damaging(0.809) TCGA-3N-A9WC-06 18 28986078 28986078 C T DSG4 Missense_Mutation p.P559S 0.35 tolerated(0.3) benign(0.006) TCGA-3N-A9WC-06 18 29046605 29046605 C T DSG3 Silent p.S508S 0.24 TCGA-3N-A9WC-06 18 29056118 29056118 G A DSG3 Silent p.V965V 0.26 TCGA-3N-A9WC-06 18 29118862 29118862 G A DSG2 Silent p.R600R 0.25 TCGA-3N-A9WC-06 18 2946212 2946212 G A LPIN2 Intron 0.28 TCGA-3N-A9WC-06 18 30091827 30091827 G A WBP11P1 RNA 0.15 TCGA-3N-A9WC-06 18 31251776 31251776 C T ASXL3 Missense_Mutation p.P221S 0.22 probably_damaging(0.998) TCGA-3N-A9WC-06 18 31323450 31323450 C T ASXL3 Missense_Mutation p.S1213F 0.21 benign(0.406) TCGA-3N-A9WC-06 18 3154962 3154962 G A MYOM1 Silent p.L542L 0.29 TCGA-3N-A9WC-06 18 32833605 32833605 G A ZSCAN30 Nonsense_Mutation p.Q432* 0.28 TCGA-3N-A9WC-06 18 32833711 32833711 C T ZSCAN30 Silent p.R396R 0.32 TCGA-3N-A9WC-06 18 40695397 40695397 C T RIT2 Missense_Mutation p.G30R 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 18 42281470 42281470 G A SETBP1 Silent p.E53E 0.23 TCGA-3N-A9WC-06 18 42281492 42281492 G A SETBP1 Missense_Mutation p.D61N 0.16 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 18 42530424 42530424 C T SETBP1 Silent p.S373S 0.25 TCGA-3N-A9WC-06 18 42643084 42643084 C T SETBP1 Silent p.I1404I 0.26 TCGA-3N-A9WC-06 18 43420179 43420179 A C SIGLEC15 Missense_Mutation p.H293P 0.23 tolerated(0.13) benign(0.002) TCGA-3N-A9WC-06 18 43467762 43467762 G A EPG5 Missense_Mutation p.P1688L 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-3N-A9WC-06 18 44559838 44559838 C T TCEB3B Missense_Mutation p.E600K 0.30 tolerated(0.06) probably_damaging(0.936) TCGA-3N-A9WC-06 18 44626649 44626649 G A KATNAL2 Missense_Mutation p.D395N 0.31 deleterious(0) probably_damaging(0.985) TCGA-3N-A9WC-06 18 44626657 44626657 G A KATNAL2 Silent p.K397K 0.33 TCGA-3N-A9WC-06 18 47116888 47116888 C T LIPG Missense_Mutation p.P500L 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-3N-A9WC-06 18 47787469 47787469 C T CCDC11 Silent p.Q146Q 0.18 TCGA-3N-A9WC-06 18 48500866 48500866 A C ELAC1 Missense_Mutation p.E31A 0.16 tolerated(0.29) benign(0.003) TCGA-3N-A9WC-06 18 50976940 50976940 G A DCC Silent p.V1100V 0.24 TCGA-3N-A9WC-06 18 52899811 52899811 C T TCF4 Silent p.T628T 0.21 TCGA-3N-A9WC-06 18 56035081 56035081 C T NEDD4L Missense_Mutation p.H723Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 18 56204461 56204461 C T ALPK2 Nonsense_Mutation p.W986* 0.12 TCGA-3N-A9WC-06 18 56204462 56204462 C T ALPK2 Nonsense_Mutation p.W986* 0.11 TCGA-3N-A9WC-06 18 59157987 59157987 C T CDH20 Silent p.F67F 0.34 TCGA-3N-A9WC-06 18 59203765 59203765 C T CDH20 Silent p.F437F 0.22 TCGA-3N-A9WC-06 18 60036538 60036538 C T TNFRSF11A Missense_Mutation p.S463F 0.51 tolerated(0.07) benign(0.023) TCGA-3N-A9WC-06 18 60241687 60241687 C T ZCCHC2 Silent p.S791S 0.23 TCGA-3N-A9WC-06 18 61151818 61151818 G A SERPINB5 Missense_Mutation p.E53K 0.36 deleterious(0) possibly_damaging(0.906) TCGA-3N-A9WC-06 18 61304977 61304977 G A SERPINB4 Silent p.F383F 0.21 TCGA-3N-A9WC-06 18 61309084 61309084 C T SERPINB4 Silent p.K87K 0.19 TCGA-3N-A9WC-06 18 61323152 61323152 C T SERPINB3 Missense_Mutation p.M304I 0.27 tolerated(0.11) benign(0.021) TCGA-3N-A9WC-06 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.21 deleterious(0.01) possibly_damaging(0.663) TCGA-3N-A9WC-06 18 61324524 61324524 C T SERPINB3 Missense_Mutation p.E198K 0.13 tolerated(0.15) benign(0.285) TCGA-3N-A9WC-06 18 61468181 61468181 C T SERPINB7 Missense_Mutation p.L227F 0.28 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WC-06 18 61562572 61562572 C T SERPINB2 Silent p.F81F 0.25 TCGA-3N-A9WC-06 18 63530131 63530131 C T CDH7 Silent p.L614L 0.28 TCGA-3N-A9WC-06 18 64171932 64171932 G A CDH19 3'UTR 0.17 TCGA-3N-A9WC-06 18 6956747 6956747 C T LAMA1 Missense_Mutation p.S2661N 0.39 tolerated(0.29) benign(0.002) TCGA-3N-A9WC-06 18 70526090 70526090 C T NETO1 Missense_Mutation p.G147E 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-3N-A9WC-06 18 71803069 71803069 G A FBXO15 Missense_Mutation p.S87F 0.36 deleterious(0.01) possibly_damaging(0.513) TCGA-3N-A9WC-06 18 72347161 72347161 C T ZNF407 Nonsense_Mutation p.Q1396* 0.29 TCGA-3N-A9WC-06 18 72775622 72775622 C T ZNF407 Missense_Mutation p.P1982L 0.31 deleterious(0.02) benign(0.162) TCGA-3N-A9WC-06 18 72998506 72998506 G A TSHZ1 Missense_Mutation p.D337N 0.18 tolerated(0.22) possibly_damaging(0.694) TCGA-3N-A9WC-06 18 73122775 73122775 G A SMIM21 3'UTR 0.21 TCGA-3N-A9WC-06 18 73130850 73130850 G A SMIM21 Missense_Mutation p.R51C 0.40 deleterious_low_confidence(0.03) benign(0.193) TCGA-3N-A9WC-06 18 74616348 74616348 C T ZNF236 Missense_Mutation p.P634L 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-3N-A9WC-06 18 74616349 74616349 C T ZNF236 Silent p.P634P 0.10 TCGA-3N-A9WC-06 19 10224763 10224763 C T PPAN-P2RY11 Silent p.A578A 0.37 TCGA-3N-A9WC-06 19 10473101 10473101 C T TYK2 Missense_Mutation p.R503Q 0.14 deleterious(0.01) possibly_damaging(0.563) TCGA-3N-A9WC-06 19 10691958 10691958 G A AP1M2 Silent p.L219L 0.27 TCGA-3N-A9WC-06 19 11107211 11107211 G A SMARCA4 Silent p.P601P 0.35 TCGA-3N-A9WC-06 19 11107213 11107213 A G SMARCA4 Missense_Mutation p.D602G 0.37 probably_damaging(0.999) TCGA-3N-A9WC-06 19 11285267 11285267 G A KANK2 Silent p.A658A 0.26 TCGA-3N-A9WC-06 19 11577015 11577015 C T ELAVL3 Missense_Mutation p.G102D 0.19 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 19 12164027 12164027 G A ZNF878 5'Flank 0.40 TCGA-3N-A9WC-06 19 12298662 12298662 C T ZNF136 Missense_Mutation p.S490F 0.15 tolerated(0.15) possibly_damaging(0.74) TCGA-3N-A9WC-06 19 12384613 12384613 G A ZNF44 Missense_Mutation p.R201C 0.20 tolerated(0.18) benign(0.276) TCGA-3N-A9WC-06 19 12865690 12865690 G A BEST2 Splice_Site p.X161_splice 0.44 TCGA-3N-A9WC-06 19 12883828 12883828 G A HOOK2 Silent p.L79L 0.20 TCGA-3N-A9WC-06 19 13428068 13428068 C T CACNA1A Silent p.K471K 0.43 TCGA-3N-A9WC-06 19 14001085 14001085 G A C19orf57 Missense_Mutation p.P195L 0.26 tolerated(0.09) probably_damaging(0.958) TCGA-3N-A9WC-06 19 14020750 14020750 C T CC2D1A Silent p.L59L 0.21 TCGA-3N-A9WC-06 19 14730220 14730220 C T EMR3 3'UTR 0.27 TCGA-3N-A9WC-06 19 15276831 15276831 C T NOTCH3 Missense_Mutation p.E1812K 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-3N-A9WC-06 19 15784403 15784403 C T CYP4F12 Silent p.L22L 0.29 TCGA-3N-A9WC-06 19 1584581 1584581 C T MBD3 Silent p.K122K 0.29 TCGA-3N-A9WC-06 19 15852724 15852724 G A OR10H3 Silent p.V174V 0.27 TCGA-3N-A9WC-06 19 15989525 15989525 C T CYP4F2 3'UTR 0.29 TCGA-3N-A9WC-06 19 16003149 16003149 C A CYP4F2 Missense_Mutation p.K165N 0.24 deleterious(0.05) benign(0.292) TCGA-3N-A9WC-06 19 16197310 16197310 C T TPM4 Missense_Mutation p.A151V 0.23 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 19 16504802 16504802 G A EPS15L1 Silent p.F642F 0.19 TCGA-3N-A9WC-06 19 16870159 16870159 G A NWD1 Nonsense_Mutation p.W631* 0.32 TCGA-3N-A9WC-06 19 17373669 17373669 C T USHBP1 Missense_Mutation p.G112R 0.24 tolerated(0.58) benign(0.004) TCGA-3N-A9WC-06 19 17654422 17654422 C T FAM129C Silent p.L543L 0.33 TCGA-3N-A9WC-06 19 17766175 17766175 C T UNC13A Missense_Mutation p.D434N 0.30 tolerated_low_confidence(0.4) benign(0.01) TCGA-3N-A9WC-06 19 17778938 17778938 C T UNC13A Silent p.R152R 0.18 TCGA-3N-A9WC-06 19 17865979 17865979 G A FCHO1 Silent p.S2S 0.27 TCGA-3N-A9WC-06 19 17918940 17918940 C T B3GNT3 Silent p.F108F 0.17 TCGA-3N-A9WC-06 19 18054397 18054397 C T CCDC124 Missense_Mutation p.P182L 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 19 18731265 18731265 G A TMEM59L Nonsense_Mutation p.W316* 0.27 TCGA-3N-A9WC-06 19 19334896 19334896 C T NCAN Missense_Mutation p.A181V 0.29 tolerated(0.18) probably_damaging(0.998) TCGA-3N-A9WC-06 19 19625467 19625467 G A TSSK6 Missense_Mutation p.S257F 0.27 tolerated(0.05) possibly_damaging(0.77) TCGA-3N-A9WC-06 19 19627014 19627014 C T NDUFA13 5'UTR 0.30 TCGA-3N-A9WC-06 19 21720530 21720530 C T ZNF429 Missense_Mutation p.H559Y 0.20 tolerated(0.07) benign(0.333) TCGA-3N-A9WC-06 19 2225428 2225428 C T DOT1L Missense_Mutation p.S1213F 0.22 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-3N-A9WC-06 19 22363809 22363809 G A ZNF676 Missense_Mutation p.S237F 0.11 tolerated(0.35) benign(0) TCGA-3N-A9WC-06 19 22363813 22363813 G A ZNF676 Nonsense_Mutation p.R236* 0.20 TCGA-3N-A9WC-06 19 22364073 22364073 G A ZNF676 Missense_Mutation p.S149L 0.16 tolerated(0.08) benign(0.001) TCGA-3N-A9WC-06 19 22574923 22574923 G A ZNF98 Missense_Mutation p.H372Y 0.30 deleterious(0.01) probably_damaging(0.961) TCGA-3N-A9WC-06 19 22585641 22585641 C T ZNF98 Missense_Mutation p.G68E 0.15 tolerated(0.32) benign(0.013) TCGA-3N-A9WC-06 19 22939845 22939845 G A ZNF99 3'Flank 0.21 TCGA-3N-A9WC-06 19 22951144 22951144 C T ZNF99 Nonsense_Mutation p.W63* 0.20 TCGA-3N-A9WC-06 19 23328621 23328621 G A ZNF730 Missense_Mutation p.E259K 0.21 tolerated(0.1) probably_damaging(0.974) TCGA-3N-A9WC-06 19 23542595 23542595 G A ZNF91 Silent p.S1062S 0.22 TCGA-3N-A9WC-06 19 23542596 23542596 G A ZNF91 Missense_Mutation p.S1062F 0.22 tolerated(0.72) probably_damaging(0.997) TCGA-3N-A9WC-06 19 30934659 30934659 C T ZNF536 Silent p.L64L 0.23 TCGA-3N-A9WC-06 19 33655147 33655147 G A WDR88 Silent p.K375K 0.24 TCGA-3N-A9WC-06 19 33703235 33703235 G A SLC7A10 Missense_Mutation p.L251F 0.16 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 19 35551368 35551368 C T HPN Missense_Mutation p.S191F 0.27 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 19 35836598 35836598 C T CD22 Missense_Mutation p.P768S 0.30 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 19 35981342 35981342 C T KRTDAP Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) benign(0.043) TCGA-3N-A9WC-06 19 36297677 36297677 T C PRODH2 Missense_Mutation p.N321S 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-3N-A9WC-06 19 36348259 36348259 A G KIRREL2 Missense_Mutation p.H25R 0.29 tolerated(0.72) benign(0.004) TCGA-3N-A9WC-06 19 36357172 36357172 G A KIRREL2 Silent p.G635G 0.28 TCGA-3N-A9WC-06 19 36357332 36357332 C T KIRREL2 Missense_Mutation p.P689S 0.40 tolerated(0.39) benign(0.309) TCGA-3N-A9WC-06 19 38077704 38077704 T C ZNF571 Intron 0.24 TCGA-3N-A9WC-06 19 38103781 38103781 C T ZNF540 Missense_Mutation p.R534C 0.27 tolerated(0.24) possibly_damaging(0.847) TCGA-3N-A9WC-06 19 38643554 38643554 C T SIPA1L3 Missense_Mutation p.S1203F 0.29 deleterious(0.03) possibly_damaging(0.862) TCGA-3N-A9WC-06 19 38876215 38876215 C T GGN Missense_Mutation p.G563R 0.28 tolerated_low_confidence(0.08) benign(0.181) TCGA-3N-A9WC-06 19 38933012 38933012 C T RYR1 Silent p.I63I 0.27 TCGA-3N-A9WC-06 19 38979961 38979961 G A RYR1 Missense_Mutation p.E1898K 0.30 benign(0.044) TCGA-3N-A9WC-06 19 38979988 38979988 G A RYR1 Missense_Mutation p.E1907K 0.26 benign(0.066) TCGA-3N-A9WC-06 19 40316701 40316701 G A DYRK1B Missense_Mutation p.P515L 0.25 tolerated_low_confidence(1) benign(0.004) TCGA-3N-A9WC-06 19 40408404 40408404 C T FCGBP Missense_Mutation p.D1479N 0.17 possibly_damaging(0.627) TCGA-3N-A9WC-06 19 40889927 40889927 C T HIPK4 Silent p.K195K 0.32 TCGA-3N-A9WC-06 19 41113424 41113424 C T LTBP4 Missense_Mutation p.P449L 0.29 tolerated(1) possibly_damaging(0.599) TCGA-3N-A9WC-06 19 41450651 41450651 C T AC092071.1 5'Flank 0.34 TCGA-3N-A9WC-06 19 41510219 41510219 G A CYP2B6 Missense_Mutation p.G118R 0.34 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 19 41594970 41594970 C T CYP2A13 Missense_Mutation p.T106I 0.24 tolerated(0.88) probably_damaging(0.992) TCGA-3N-A9WC-06 19 41594971 41594971 C T CYP2A13 Silent p.T106T 0.26 TCGA-3N-A9WC-06 19 41707258 41707258 G A CYP2S1 Missense_Mutation p.M319I 0.28 deleterious(0.03) benign(0.009) TCGA-3N-A9WC-06 19 42219712 42219712 G A CEACAM5 Missense_Mutation p.E283K 0.25 tolerated(0.14) unknown(0) TCGA-3N-A9WC-06 19 42813974 42813974 G A PRR19 Missense_Mutation p.E80K 0.24 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 19 4311858 4311858 C T FSD1 Silent p.I170I 0.10 TCGA-3N-A9WC-06 19 43428850 43428850 G A PSG7 3'UTR 0.17 TCGA-3N-A9WC-06 19 43690614 43690614 C T PSG5 5'UTR 0.21 TCGA-3N-A9WC-06 19 43762435 43762435 G A PSG9 Missense_Mutation p.H388Y 0.25 deleterious(0.01) benign(0.38) TCGA-3N-A9WC-06 19 43920131 43920131 G A TEX101 Silent p.L38L 0.27 TCGA-3N-A9WC-06 19 44660987 44660987 C T ZNF234 Missense_Mutation p.S273F 0.27 deleterious(0.02) probably_damaging(0.937) TCGA-3N-A9WC-06 19 44936403 44936403 G A ZNF229 Missense_Mutation p.P78S 0.22 tolerated(0.64) benign(0.035) TCGA-3N-A9WC-06 19 45297471 45297471 C T CBLC Missense_Mutation p.S432L 0.35 deleterious(0.04) benign(0.001) TCGA-3N-A9WC-06 19 45316596 45316596 G A BCAM Missense_Mutation p.M198I 0.23 tolerated(0.23) benign(0.001) TCGA-3N-A9WC-06 19 45815063 45815063 G A CKM Silent p.S199S 0.25 TCGA-3N-A9WC-06 19 45998201 45998201 C T RTN2 Missense_Mutation p.E48K 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-3N-A9WC-06 19 46664099 46664099 C T IGFL2 Missense_Mutation p.S112F 0.26 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 19 48197853 48197853 C T GLTSCR1 Missense_Mutation p.P922L 0.36 possibly_damaging(0.736) TCGA-3N-A9WC-06 19 48522985 48522985 G A ELSPBP1 Missense_Mutation p.G122E 0.31 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 19 48542572 48542572 C T CABP5 Missense_Mutation p.G81S 0.29 deleterious(0.05) benign(0.118) TCGA-3N-A9WC-06 19 49107160 49107160 C T FAM83E Nonsense_Mutation p.W256* 0.25 TCGA-3N-A9WC-06 19 49113160 49113160 C T FAM83E Missense_Mutation p.G244D 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-3N-A9WC-06 19 49120079 49120079 G A RPL18 Silent p.I67I 0.31 TCGA-3N-A9WC-06 19 49167071 49167071 C T NTN5 Missense_Mutation p.R324Q 0.17 deleterious(0.04) benign(0.095) TCGA-3N-A9WC-06 19 49340713 49340713 G A PLEKHA4 Missense_Mutation p.P725S 0.23 tolerated_low_confidence(0.06) benign(0.013) TCGA-3N-A9WC-06 19 49894102 49894102 G A CCDC155 5'UTR 0.18 TCGA-3N-A9WC-06 19 50248560 50248560 G A TSKS Silent p.V362V 0.33 TCGA-3N-A9WC-06 19 50453373 50453373 C T SIGLEC11 Missense_Mutation p.G651S 0.42 deleterious(0.03) possibly_damaging(0.761) TCGA-3N-A9WC-06 19 51020753 51020753 G A LRRC4B 3'UTR 0.33 TCGA-3N-A9WC-06 19 51192464 51192464 C T SHANK1 Silent p.R679R 0.21 TCGA-3N-A9WC-06 19 51217145 51217145 G A SHANK1 Silent p.C234C 0.24 TCGA-3N-A9WC-06 19 51363208 51363208 C T KLK3 Intron 0.23 TCGA-3N-A9WC-06 19 51470532 51470532 C T KLK6 Silent p.K30K 0.26 TCGA-3N-A9WC-06 19 51530832 51530832 C T KLK11 5'UTR 0.17 TCGA-3N-A9WC-06 19 51628963 51628963 G A SIGLEC9 Missense_Mutation p.M177I 0.30 tolerated(1) benign(0.013) TCGA-3N-A9WC-06 19 51728503 51728503 C T CD33 Silent p.L23L 0.21 TCGA-3N-A9WC-06 19 51883515 51883515 C T LIM2 Silent p.G196G 0.23 TCGA-3N-A9WC-06 19 52220304 52220304 C T HAS1 Missense_Mutation p.S282N 0.22 tolerated(0.05) possibly_damaging(0.873) TCGA-3N-A9WC-06 19 52272044 52272044 G A FPR2 Missense_Mutation p.G45R 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 19 52272944 52272944 G A FPR2 Missense_Mutation p.E345K 0.18 tolerated(0.07) benign(0.033) TCGA-3N-A9WC-06 19 52376522 52376522 G A ZNF577 Missense_Mutation p.P241S 0.15 tolerated(0.09) probably_damaging(0.999) TCGA-3N-A9WC-06 19 52468896 52468896 G A ZNF350 Silent p.A270A 0.28 TCGA-3N-A9WC-06 19 53014169 53014169 C T ZNF578 Nonsense_Mutation p.Q179* 0.35 TCGA-3N-A9WC-06 19 53207878 53207878 G A ZNF611 3'UTR 0.36 TCGA-3N-A9WC-06 19 53572444 53572444 G A ZNF160 Missense_Mutation p.T448I 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-3N-A9WC-06 19 53668999 53668999 G A ZNF665 Silent p.N248N 0.23 TCGA-3N-A9WC-06 19 53762270 53762270 C T VN1R2 Silent p.I214I 0.29 TCGA-3N-A9WC-06 19 53793019 53793019 A G BIRC8 Silent p.P203P 0.13 TCGA-3N-A9WC-06 19 53994131 53994131 C T ZNF813 Silent p.F215F 0.20 TCGA-3N-A9WC-06 19 54194158 54194158 G A MIR520A RNA 0.32 TCGA-3N-A9WC-06 19 54308686 54308686 G A NLRP12 Silent p.I754I 0.28 TCGA-3N-A9WC-06 19 54567027 54567027 G A VSTM1 Missense_Mutation p.T2I 0.19 tolerated_low_confidence(0.72) probably_damaging(0.969) TCGA-3N-A9WC-06 19 54848675 54848675 G A LILRA4 Silent p.I316I 0.13 TCGA-3N-A9WC-06 19 54849290 54849290 C T LILRA4 Missense_Mutation p.G191D 0.25 deleterious(0) possibly_damaging(0.891) TCGA-3N-A9WC-06 19 54941726 54941726 A T TTYH1 Splice_Site p.X295_splice 0.21 TCGA-3N-A9WC-06 19 54941727 54941727 G T TTYH1 Splice_Site p.X295_splice 0.21 TCGA-3N-A9WC-06 19 54966569 54966569 C T LENG8 Missense_Mutation p.S283F 0.27 deleterious(0.01) possibly_damaging(0.812) TCGA-3N-A9WC-06 19 55045164 55045164 T C KIR3DX1 Missense_Mutation p.V95A 0.33 tolerated(0.43) benign(0.004) TCGA-3N-A9WC-06 19 55045167 55045167 G A KIR3DX1 Missense_Mutation p.G96E 0.34 deleterious(0.02) possibly_damaging(0.471) TCGA-3N-A9WC-06 19 55047110 55047110 G A KIR3DX1 Missense_Mutation p.G219R 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-3N-A9WC-06 19 55085260 55085260 C T LILRA2 Intron 0.30 TCGA-3N-A9WC-06 19 55377839 55377839 G A KIR3DL2 Missense_Mutation p.D374N 0.21 tolerated(0.36) benign(0.012) TCGA-3N-A9WC-06 19 55451326 55451326 C T NLRP7 Silent p.L287L 0.10 TCGA-3N-A9WC-06 19 55496525 55496525 C T NLRP2 Missense_Mutation p.S714F 0.32 deleterious(0.04) possibly_damaging(0.8) TCGA-3N-A9WC-06 19 56243390 56243390 G A NLRP9 Missense_Mutation p.P603S 0.14 tolerated(1) benign(0.004) TCGA-3N-A9WC-06 19 56243801 56243801 G A NLRP9 Missense_Mutation p.P466S 0.20 tolerated(0.15) benign(0.232) TCGA-3N-A9WC-06 19 56321684 56321684 C T NLRP11 Missense_Mutation p.A98T 0.20 tolerated(0.56) benign(0.168) TCGA-3N-A9WC-06 19 56379164 56379164 C T NLRP4 Missense_Mutation p.S759F 0.35 deleterious(0.03) possibly_damaging(0.897) TCGA-3N-A9WC-06 19 56531747 56531747 C T NLRP5 Missense_Mutation p.S210L 0.18 tolerated(0.2) benign(0.001) TCGA-3N-A9WC-06 19 5733907 5733907 C T CATSPERD Missense_Mutation p.S106L 0.23 tolerated(0.06) benign(0.059) TCGA-3N-A9WC-06 19 57641958 57641958 G A USP29 Missense_Mutation p.A639T 0.30 tolerated(0.7) benign(0.01) TCGA-3N-A9WC-06 19 57802761 57802761 A T ZNF460 Missense_Mutation p.E284D 0.22 tolerated(0.06) possibly_damaging(0.538) TCGA-3N-A9WC-06 19 5783334 5783334 C T PRR22 Silent p.E308E 0.29 TCGA-3N-A9WC-06 19 57888585 57888585 C T ZNF547 Silent p.L81L 0.26 TCGA-3N-A9WC-06 19 57888876 57888876 C T ZNF547 Missense_Mutation p.H178Y 0.28 tolerated(0.19) probably_damaging(0.997) TCGA-3N-A9WC-06 19 58018772 58018772 C T ZNF773 Missense_Mutation p.H437Y 0.31 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WC-06 19 58213082 58213082 G A ZNF154 Missense_Mutation p.P412L 0.23 deleterious(0) probably_damaging(0.984) TCGA-3N-A9WC-06 19 5844145 5844145 C T FUT3 Missense_Mutation p.E236K 0.29 tolerated(0.64) benign(0.033) TCGA-3N-A9WC-06 19 58491543 58491543 G A ZNF606 Missense_Mutation p.P169S 0.23 tolerated(0.43) benign(0.013) TCGA-3N-A9WC-06 19 6472954 6472954 C T DENND1C Silent p.G368G 0.36 TCGA-3N-A9WC-06 19 6820790 6820790 C T VAV1 Silent p.F94F 0.28 TCGA-3N-A9WC-06 19 6820818 6820818 G A VAV1 Missense_Mutation p.D104N 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-3N-A9WC-06 19 7607527 7607527 T C PNPLA6 Missense_Mutation p.S454P 0.23 tolerated(0.18) benign(0.011) TCGA-3N-A9WC-06 19 7607529 7607529 C G PNPLA6 Silent p.S454S 0.25 TCGA-3N-A9WC-06 19 7672730 7672730 G A CAMSAP3 Silent p.K226K 0.23 TCGA-3N-A9WC-06 19 7964158 7964158 C T LRRC8E Silent p.L251L 0.30 TCGA-3N-A9WC-06 19 8188753 8188753 G A FBN3 Silent p.P957P 0.38 TCGA-3N-A9WC-06 19 8613155 8613155 C T MYO1F Missense_Mutation p.G383D 0.28 deleterious(0.01) probably_damaging(0.965) TCGA-3N-A9WC-06 19 8656973 8656973 C T ADAMTS10 Silent p.R534R 0.21 TCGA-3N-A9WC-06 19 8994479 8994479 C T MUC16 Missense_Mutation p.E13805K 0.32 possibly_damaging(0.901) TCGA-3N-A9WC-06 19 9060032 9060032 C T MUC16 Silent p.V9138V 0.28 TCGA-3N-A9WC-06 19 9064540 9064540 G A MUC16 Missense_Mutation p.L7636F 0.25 unknown(0) TCGA-3N-A9WC-06 19 9070929 9070929 G A MUC16 Missense_Mutation p.T5506I 0.16 unknown(0) TCGA-3N-A9WC-06 19 9090772 9090772 G A MUC16 Missense_Mutation p.S348F 0.29 unknown(0) TCGA-3N-A9WC-06 19 9204183 9204183 G A OR1M1 Missense_Mutation p.G88E 0.30 tolerated(0.23) benign(0.011) TCGA-3N-A9WC-06 19 9225812 9225812 G A OR7G1 Missense_Mutation p.P210S 0.19 tolerated(0.09) benign(0.39) TCGA-3N-A9WC-06 19 9361752 9361752 C T OR7E24 Silent p.F11F 0.29 TCGA-3N-A9WC-06 19 9361866 9361866 C T OR7E24 Silent p.F49F 0.22 TCGA-3N-A9WC-06 19 9580339 9580339 C T ZNF560 Missense_Mutation p.E166K 0.24 tolerated(0.5) possibly_damaging(0.636) TCGA-3N-A9WC-06 19 990904 990904 C T WDR18 Missense_Mutation p.S217F 0.39 deleterious(0.02) benign(0.139) TCGA-3N-A9WC-06 1 10035723 10035723 C T NMNAT1 Silent p.A63A 0.22 TCGA-3N-A9WC-06 1 100534095 100534095 C T HIAT1 Silent p.L258L 0.23 TCGA-3N-A9WC-06 1 100550967 100550967 C T SASS6 Missense_Mutation p.G631R 0.21 tolerated(0.22) benign(0.22) TCGA-3N-A9WC-06 1 10231243 10231243 A G UBE4B Silent p.Q1127Q 0.18 TCGA-3N-A9WC-06 1 103548411 103548411 C T COL11A1 Missense_Mutation p.R75K 0.27 possibly_damaging(0.684) TCGA-3N-A9WC-06 1 107867260 107867260 C T NTNG1 Silent p.V201V 0.23 TCGA-3N-A9WC-06 1 108303475 108303475 C T VAV3 Silent p.G316G 0.22 TCGA-3N-A9WC-06 1 109264964 109264964 G A FNDC7 Silent p.R202R 0.23 TCGA-3N-A9WC-06 1 11015152 11015152 C T C1orf127 Silent p.L290L 0.23 TCGA-3N-A9WC-06 1 110254964 110254964 C T GSTM5 Silent p.I10I 0.28 TCGA-3N-A9WC-06 1 110466803 110466803 G A CSF1 Nonsense_Mutation p.W520* 0.24 TCGA-3N-A9WC-06 1 111216070 111216070 G A KCNA3 Silent p.T454T 0.30 TCGA-3N-A9WC-06 1 111436954 111436954 C T CD53 Silent p.F86F 0.32 TCGA-3N-A9WC-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.25 deleterious(0) benign(0.109) TCGA-3N-A9WC-06 1 115438073 115438073 G A SYCP1 Silent p.E421E 0.41 TCGA-3N-A9WC-06 1 115576594 115576594 G A TSHB Missense_Mutation p.D55N 0.24 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 1 11854523 11854523 G A MTHFR Silent p.P413P 0.25 TCGA-3N-A9WC-06 1 11854524 11854524 G A MTHFR Missense_Mutation p.P413L 0.25 tolerated(0.16) benign(0.066) TCGA-3N-A9WC-06 1 118570984 118570984 C T SPAG17 Missense_Mutation p.E1215K 0.33 tolerated(0.13) possibly_damaging(0.455) TCGA-3N-A9WC-06 1 11883846 11883846 C T CLCN6 Missense_Mutation p.T179I 0.26 deleterious(0) possibly_damaging(0.907) TCGA-3N-A9WC-06 1 12008106 12008106 C T PLOD1 Silent p.F50F 0.13 TCGA-3N-A9WC-06 1 120302551 120302551 G A HMGCS2 Silent p.P207P 0.37 TCGA-3N-A9WC-06 1 120307198 120307198 C T HMGCS2 Silent p.K52K 0.30 TCGA-3N-A9WC-06 1 12316487 12316487 C T VPS13D Missense_Mutation p.P256L 0.21 probably_damaging(0.98) TCGA-3N-A9WC-06 1 12415977 12415977 C T VPS13D Missense_Mutation p.P3234L 0.14 benign(0.33) TCGA-3N-A9WC-06 1 12835004 12835004 C T PRAMEF12 5'UTR 0.14 TCGA-3N-A9WC-06 1 12835722 12835722 G A PRAMEF12 Silent p.V108V 0.20 TCGA-3N-A9WC-06 1 12836094 12836094 C T PRAMEF12 Silent p.L232L 0.18 TCGA-3N-A9WC-06 1 12908086 12908086 G A HNRNPCL1 Silent p.F19F 0.10 TCGA-3N-A9WC-06 1 12952776 12952776 C T PRAMEF10 Missense_Mutation p.E466K 0.21 tolerated(0.05) possibly_damaging(0.811) TCGA-3N-A9WC-06 1 142713336 142713336 C T RP11-417J8.6 RNA 0.15 TCGA-3N-A9WC-06 1 147380484 147380484 C A GJA8 Silent p.G134G 0.49 TCGA-3N-A9WC-06 1 149898584 149898584 G A SF3B4 Silent p.P130P 0.51 TCGA-3N-A9WC-06 1 150915482 150915482 C T SETDB1 Silent p.L276L 0.49 TCGA-3N-A9WC-06 1 150974207 150974207 G A FAM63A Missense_Mutation p.H217Y 0.53 tolerated(0.6) possibly_damaging(0.747) TCGA-3N-A9WC-06 1 150974208 150974208 G T FAM63A Silent p.A216A 0.53 TCGA-3N-A9WC-06 1 151110217 151110217 C T SEMA6C Silent p.E242E 0.47 TCGA-3N-A9WC-06 1 151260816 151260816 G A ZNF687 Silent p.R683R 0.19 TCGA-3N-A9WC-06 1 151507554 151507554 G A CGN Missense_Mutation p.E981K 0.18 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 151787887 151787887 G A RORC Missense_Mutation p.R105C 0.37 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 152059182 152059182 C T TCHHL1 Missense_Mutation p.D326N 0.52 tolerated(0.12) probably_damaging(0.952) TCGA-3N-A9WC-06 1 152080416 152080416 C T TCHH Silent p.R1759R 0.41 TCGA-3N-A9WC-06 1 152187684 152187684 C T HRNR Missense_Mutation p.G2141R 0.04 unknown(0) TCGA-3N-A9WC-06 1 152195592 152195592 C T HRNR Silent p.K46K 0.14 TCGA-3N-A9WC-06 1 152280055 152280055 C T FLG Missense_Mutation p.G2436E 0.51 possibly_damaging(0.904) TCGA-3N-A9WC-06 1 152281379 152281379 C T FLG Missense_Mutation p.E1995K 0.09 possibly_damaging(0.621) TCGA-3N-A9WC-06 1 152283164 152283164 C T FLG Missense_Mutation p.G1400R 0.43 probably_damaging(0.988) TCGA-3N-A9WC-06 1 152285827 152285827 C T FLG Missense_Mutation p.G512D 0.45 probably_damaging(0.96) TCGA-3N-A9WC-06 1 152382032 152382032 C T CRNN 3'UTR 0.10 TCGA-3N-A9WC-06 1 152383300 152383300 G A CRNN Silent p.F86F 0.46 TCGA-3N-A9WC-06 1 152648668 152648668 C T LCE2C Silent p.S59S 0.10 TCGA-3N-A9WC-06 1 152770641 152770641 C T LCE1D 3'UTR 0.35 TCGA-3N-A9WC-06 1 153177196 153177196 G A LELP1 Missense_Mutation p.D5N 0.50 deleterious_low_confidence(0.05) possibly_damaging(0.908) TCGA-3N-A9WC-06 1 153279638 153279638 C T PGLYRP3 Missense_Mutation p.G54E 0.33 deleterious(0.01) benign(0.443) TCGA-3N-A9WC-06 1 153303389 153303389 C T PGLYRP4 Missense_Mutation p.A326T 0.46 deleterious(0.02) benign(0.394) TCGA-3N-A9WC-06 1 153615591 153615591 C T CHTOP Intron 0.10 TCGA-3N-A9WC-06 1 153745416 153745416 C T INTS3 Silent p.F970F 0.40 TCGA-3N-A9WC-06 1 153745843 153745843 C T INTS3 3'UTR 0.13 TCGA-3N-A9WC-06 1 153745844 153745844 C T INTS3 3'UTR 0.12 TCGA-3N-A9WC-06 1 153963635 153963635 G T RPS27 Missense_Mutation p.R17S 0.08 deleterious(0.04) benign(0.031) TCGA-3N-A9WC-06 1 154516515 154516515 G A TDRD10 Missense_Mutation p.G194R 0.07 tolerated(0.06) possibly_damaging(0.634) TCGA-3N-A9WC-06 1 154965052 154965052 C T FLAD1 Intron 0.46 TCGA-3N-A9WC-06 1 155204868 155204868 G A GBA Missense_Mutation p.T510I 0.33 tolerated(0.17) possibly_damaging(0.777) TCGA-3N-A9WC-06 1 155313451 155313451 G A ASH1L Silent p.H2688H 0.39 TCGA-3N-A9WC-06 1 155313452 155313452 T A ASH1L Missense_Mutation p.H2688L 0.39 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-3N-A9WC-06 1 155838381 155838381 C T SYT11 Silent p.D220D 0.13 TCGA-3N-A9WC-06 1 155912356 155912356 A G RXFP4 Missense_Mutation p.I286V 0.15 tolerated(1) benign(0.003) TCGA-3N-A9WC-06 1 156213016 156213016 C T PMF1-BGLAP 3'UTR 0.44 TCGA-3N-A9WC-06 1 157668363 157668363 C T FCRL3 Missense_Mutation p.G37R 0.31 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WC-06 1 157773831 157773831 G A FCRL1 Silent p.P41P 0.37 TCGA-3N-A9WC-06 1 157801728 157801728 G A CD5L 3'UTR 0.51 TCGA-3N-A9WC-06 1 158226597 158226597 C T CD1A Missense_Mutation p.S209F 0.33 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 158301167 158301167 C T CD1B Missense_Mutation p.G16D 0.17 deleterious(0.04) benign(0.023) TCGA-3N-A9WC-06 1 158450402 158450402 C T OR10R2 Silent p.I245I 0.32 TCGA-3N-A9WC-06 1 158549510 158549510 G A OR10X1 Silent p.I60I 0.15 TCGA-3N-A9WC-06 1 158595950 158595950 G A SPTA1 Missense_Mutation p.L1966F 0.41 deleterious(0.02) probably_damaging(0.979) TCGA-3N-A9WC-06 1 158725453 158725453 C T OR6K6 Missense_Mutation p.A283V 0.48 tolerated(0.21) benign(0.099) TCGA-3N-A9WC-06 1 158815383 158815383 G A MNDA Missense_Mutation p.E193K 0.20 tolerated(1) benign(0) TCGA-3N-A9WC-06 1 158815725 158815725 C T MNDA Missense_Mutation p.P307S 0.34 tolerated(0.07) possibly_damaging(0.665) TCGA-3N-A9WC-06 1 159163664 159163664 A G CADM3 Silent p.E209E 0.38 TCGA-3N-A9WC-06 1 159163804 159163804 C T CADM3 Missense_Mutation p.S256F 0.43 tolerated(0.27) benign(0.047) TCGA-3N-A9WC-06 1 159410369 159410369 C T OR10J1 Missense_Mutation p.S274L 0.16 deleterious(0.02) benign(0.327) TCGA-3N-A9WC-06 1 159557737 159557737 C T APCS Missense_Mutation p.S9F 0.30 tolerated(0.17) benign(0.003) TCGA-3N-A9WC-06 1 159796601 159796601 G A SLAMF8 5'UTR 0.31 TCGA-3N-A9WC-06 1 160125914 160125914 A T ATP1A4 Missense_Mutation p.K164M 0.44 deleterious(0.01) benign(0.067) TCGA-3N-A9WC-06 1 16058536 16058536 C T PLEKHM2 Missense_Mutation p.S873F 0.37 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 160769826 160769826 G A LY9 Silent p.R136R 0.26 TCGA-3N-A9WC-06 1 160783680 160783680 C T LY9 Missense_Mutation p.H237Y 0.43 tolerated(0.71) benign(0.119) TCGA-3N-A9WC-06 1 161069375 161069375 C T KLHDC9 Intron 0.24 TCGA-3N-A9WC-06 1 165182996 165182996 C T LMX1A Missense_Mutation p.G184E 0.04 tolerated(0.06) possibly_damaging(0.573) TCGA-3N-A9WC-06 1 166904644 166904644 G A ILDR2 Silent p.S258S 0.19 TCGA-3N-A9WC-06 1 166974588 166974588 C T MAEL Nonsense_Mutation p.R267* 0.59 TCGA-3N-A9WC-06 1 166991036 166991036 C T MAEL Missense_Mutation p.L417F 0.38 deleterious_low_confidence(0.02) benign(0.006) TCGA-3N-A9WC-06 1 167042713 167042713 C T GPA33 Missense_Mutation p.G36E 0.23 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 1 167745357 167745357 C T MPZL1 Missense_Mutation p.S221F 0.55 deleterious(0) benign(0.006) TCGA-3N-A9WC-06 1 171080055 171080055 G A FMO3 Silent p.P248P 0.15 TCGA-3N-A9WC-06 1 171162617 171162617 G A FMO2 Silent p.R92R 0.11 TCGA-3N-A9WC-06 1 171174568 171174568 T A FMO2 Silent p.I326I 0.42 TCGA-3N-A9WC-06 1 171303665 171303665 G A FMO4 Missense_Mutation p.G315R 0.48 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 1 171509692 171509692 A T PRRC2C Missense_Mutation p.E1027D 0.44 unknown(0) TCGA-3N-A9WC-06 1 171509786 171509786 C T PRRC2C Missense_Mutation p.P1059S 0.22 unknown(0) TCGA-3N-A9WC-06 1 172017752 172017752 G A DNM3 Silent p.R399R 0.17 TCGA-3N-A9WC-06 1 173476054 173476054 C T SLC9C2 Missense_Mutation p.D1056N 0.13 tolerated(0.27) benign(0.036) TCGA-3N-A9WC-06 1 173551130 173551130 C T SLC9C2 Missense_Mutation p.E220K 0.41 tolerated(0.96) benign(0.026) TCGA-3N-A9WC-06 1 175052944 175052944 G A TNN Silent p.V369V 0.14 TCGA-3N-A9WC-06 1 175067652 175067652 G A TNN Silent p.P680P 0.19 TCGA-3N-A9WC-06 1 175087824 175087824 C T TNN Silent p.T838T 0.31 TCGA-3N-A9WC-06 1 175325597 175325597 G A TNR Silent p.V992V 0.16 TCGA-3N-A9WC-06 1 17596895 17596895 G A PADI3 Missense_Mutation p.D274N 0.16 tolerated(0.44) benign(0.004) TCGA-3N-A9WC-06 1 176668385 176668385 C T PAPPA2 Missense_Mutation p.L966F 0.16 deleterious(0) possibly_damaging(0.685) TCGA-3N-A9WC-06 1 176708821 176708821 C T PAPPA2 Silent p.G1286G 0.43 TCGA-3N-A9WC-06 1 176760523 176760523 A C PAPPA2 Missense_Mutation p.E1642A 0.14 deleterious(0.02) probably_damaging(0.983) TCGA-3N-A9WC-06 1 176998572 176998572 G A ASTN1 Intron 0.39 TCGA-3N-A9WC-06 1 178866844 178866844 C T RALGPS2 Missense_Mutation p.L493F 0.40 deleterious(0) probably_damaging(0.98) TCGA-3N-A9WC-06 1 17930055 17930055 C T ARHGEF10L Silent p.V134V 0.19 TCGA-3N-A9WC-06 1 179815518 179815518 G A TOR1AIP2 Silent p.F367F 0.45 TCGA-3N-A9WC-06 1 181752845 181752845 G A CACNA1E Missense_Mutation p.E1799K 0.15 deleterious(0.01) benign(0.292) TCGA-3N-A9WC-06 1 181759660 181759660 G A CACNA1E Missense_Mutation p.D1956N 0.19 tolerated(0.17) possibly_damaging(0.555) TCGA-3N-A9WC-06 1 182025440 182025440 C T ZNF648 Silent p.%3D 0.38 TCGA-3N-A9WC-06 1 182026772 182026772 G A ZNF648 Missense_Mutation p.S125F 0.45 deleterious(0.01) benign(0.001) TCGA-3N-A9WC-06 1 182615832 182615832 G A RGS8 3'UTR 0.14 TCGA-3N-A9WC-06 1 183253083 183253083 G A NMNAT2 Intron 0.49 TCGA-3N-A9WC-06 1 183885669 183885669 C T RGL1 Missense_Mutation p.S648F 0.20 deleterious(0.01) possibly_damaging(0.653) TCGA-3N-A9WC-06 1 184764653 184764653 C T FAM129A Missense_Mutation p.E749K 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.615) TCGA-3N-A9WC-06 1 185068964 185068964 C T RNF2 Missense_Mutation p.S260F 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-3N-A9WC-06 1 186276199 186276199 G A PRG4 Missense_Mutation p.E450K 0.38 unknown(0) TCGA-3N-A9WC-06 1 186645181 186645181 G A PTGS2 Missense_Mutation p.T369I 0.38 tolerated(0.4) benign(0.269) TCGA-3N-A9WC-06 1 186648470 186648470 T C PTGS2 Silent p.G51G 0.45 TCGA-3N-A9WC-06 1 18702868 18702868 G A IGSF21 Silent p.R360R 0.21 TCGA-3N-A9WC-06 1 190423993 190423993 C T BRINP3 Missense_Mutation p.E10K 0.20 tolerated_low_confidence(0.55) benign(0.003) TCGA-3N-A9WC-06 1 19181459 19181459 C T TAS1R2 Missense_Mutation p.D169N 0.17 tolerated(0.1) benign(0.341) TCGA-3N-A9WC-06 1 19184067 19184067 C T TAS1R2 Missense_Mutation p.E81K 0.27 deleterious(0.05) benign(0.086) TCGA-3N-A9WC-06 1 19494559 19494559 G T UBR4 Silent p.T1287T 0.27 TCGA-3N-A9WC-06 1 196254786 196254786 C T KCNT2 Splice_Site p.X899_splice 0.14 TCGA-3N-A9WC-06 1 196398839 196398839 G A KCNT2 Silent p.L229L 0.23 TCGA-3N-A9WC-06 1 196654313 196654313 G A CFH Missense_Mutation p.G304R 0.25 deleterious(0.02) benign(0.109) TCGA-3N-A9WC-06 1 196714956 196714956 G A CFH Missense_Mutation p.G1107E 0.39 tolerated(0.06) possibly_damaging(0.527) TCGA-3N-A9WC-06 1 196758776 196758776 C T CFHR3 Intron 0.23 TCGA-3N-A9WC-06 1 196876610 196876610 G A CFHR4 Missense_Mutation p.E260K 0.25 tolerated(0.3) possibly_damaging(0.621) TCGA-3N-A9WC-06 1 197390533 197390533 C T CRB1 Silent p.F525F 0.06 TCGA-3N-A9WC-06 1 197404130 197404130 C A CRB1 Missense_Mutation p.S1046Y 0.19 deleterious(0) possibly_damaging(0.748) TCGA-3N-A9WC-06 1 197411531 197411531 G A CRB1 Intron 0.15 TCGA-3N-A9WC-06 1 197446863 197446863 C T CRB1 Missense_Mutation p.L1359F 0.42 tolerated(0.1) possibly_damaging(0.538) TCGA-3N-A9WC-06 1 197447009 197447009 G A CRB1 Silent p.%3D 0.12 TCGA-3N-A9WC-06 1 197447026 197447026 C T CRB1 3'UTR 0.13 TCGA-3N-A9WC-06 1 198713294 198713294 C T PTPRC Missense_Mutation p.P937S 0.19 tolerated(0.14) possibly_damaging(0.607) TCGA-3N-A9WC-06 1 20082238 20082238 C T TMCO4 Missense_Mutation p.R135K 0.20 deleterious(0) probably_damaging(0.977) TCGA-3N-A9WC-06 1 200960241 200960241 C T KIF21B Missense_Mutation p.E831K 0.25 tolerated(0.18) benign(0.033) TCGA-3N-A9WC-06 1 200969055 200969055 G A KIF21B Nonsense_Mutation p.Q575* 0.09 TCGA-3N-A9WC-06 1 200969074 200969074 G A KIF21B Silent p.F568F 0.47 TCGA-3N-A9WC-06 1 201030533 201030533 C T CACNA1S Silent p.V1039V 0.14 TCGA-3N-A9WC-06 1 201054585 201054585 C T CACNA1S Missense_Mutation p.D377N 0.17 deleterious(0.03) probably_damaging(1) TCGA-3N-A9WC-06 1 201187743 201187743 G A IGFN1 Silent p.E3285E 0.48 TCGA-3N-A9WC-06 1 202917464 202917464 C G ADIPOR1 Missense_Mutation p.A76P 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-3N-A9WC-06 1 203026079 203026079 G A PPFIA4 Splice_Site p.X297_splice 0.43 TCGA-3N-A9WC-06 1 203316990 203316990 G A FMOD Missense_Mutation p.H137Y 0.36 deleterious(0.03) possibly_damaging(0.843) TCGA-3N-A9WC-06 1 203452761 203452761 C T PRELP Missense_Mutation p.P150L 0.08 deleterious(0.02) benign(0.196) TCGA-3N-A9WC-06 1 20440514 20440514 G A PLA2G2D 3'UTR 0.18 TCGA-3N-A9WC-06 1 204587052 204587052 C T LRRN2 Nonsense_Mutation p.W690* 0.49 TCGA-3N-A9WC-06 1 204949528 204949528 G C NFASC Missense_Mutation p.G736A 0.36 tolerated(0.05) probably_damaging(1) TCGA-3N-A9WC-06 1 20517625 20517625 G A UBXN10 Missense_Mutation p.E191K 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-3N-A9WC-06 1 205273203 205273203 C G NUAK2 Missense_Mutation p.G421A 0.19 tolerated(0.39) benign(0.002) TCGA-3N-A9WC-06 1 205306700 205306700 C T KLHDC8A Missense_Mutation p.E294K 0.47 tolerated(0.34) benign(0.281) TCGA-3N-A9WC-06 1 205494317 205494317 G A CDK18 Silent p.L180L 0.36 TCGA-3N-A9WC-06 1 205494318 205494318 G A CDK18 Missense_Mutation p.G181R 0.36 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 205887989 205887989 G A SLC26A9 Silent p.T745T 0.45 TCGA-3N-A9WC-06 1 205887990 205887990 G A SLC26A9 Missense_Mutation p.T745I 0.44 tolerated(0.05) benign(0.013) TCGA-3N-A9WC-06 1 206225106 206225106 C T AVPR1B Silent p.I222I 0.12 TCGA-3N-A9WC-06 1 206566199 206566199 C T SRGAP2 Missense_Mutation p.R128C 0.14 deleterious(0) probably_damaging(0.919) TCGA-3N-A9WC-06 1 206634687 206634687 C T SRGAP2 Silent p.F960F 0.38 TCGA-3N-A9WC-06 1 206820941 206820941 C T DYRK3 Missense_Mutation p.S133F 0.21 deleterious(0.02) benign(0.172) TCGA-3N-A9WC-06 1 207072817 207072817 C T IL24 Missense_Mutation p.P67L 0.44 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 1 207287462 207287462 C T C4BPA Missense_Mutation p.P54S 0.23 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 207642046 207642046 C T CR2 Missense_Mutation p.P207L 0.08 tolerated(0.44) benign(0.037) TCGA-3N-A9WC-06 1 207718808 207718808 C T CR1 Missense_Mutation p.P798S 0.53 tolerated(0.24) benign(0.31) TCGA-3N-A9WC-06 1 207867898 207867898 C T CR1L Missense_Mutation p.P222S 0.07 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 20827345 20827345 C T MUL1 Silent p.K299K 0.27 TCGA-3N-A9WC-06 1 208315734 208315734 G A PLXNA2 Silent p.I482I 0.24 TCGA-3N-A9WC-06 1 208315789 208315789 G A PLXNA2 Missense_Mutation p.P464L 0.35 tolerated(0.23) benign(0.081) TCGA-3N-A9WC-06 1 209879212 209879212 G A HSD11B1 Missense_Mutation p.E49K 0.14 deleterious(0.02) possibly_damaging(0.844) TCGA-3N-A9WC-06 1 209933669 209933669 G A TRAF3IP3 Silent p.Q95Q 0.32 TCGA-3N-A9WC-06 1 212216362 212216362 C T DTL Missense_Mutation p.S27F 0.17 tolerated(0.32) benign(0.15) TCGA-3N-A9WC-06 1 213037211 213037211 G A FLVCR1 Missense_Mutation p.A295T 0.31 deleterious(0.01) benign(0.103) TCGA-3N-A9WC-06 1 215179288 215179288 G A KCNK2 Silent p.R8R 0.12 TCGA-3N-A9WC-06 1 215955457 215955457 C T USH2A Missense_Mutation p.G3556E 0.31 possibly_damaging(0.529) TCGA-3N-A9WC-06 1 216495233 216495233 C T USH2A Missense_Mutation p.G546R 0.16 probably_damaging(0.999) TCGA-3N-A9WC-06 1 216497566 216497566 C T USH2A Missense_Mutation p.M424I 0.17 possibly_damaging(0.837) TCGA-3N-A9WC-06 1 216680238 216680238 C T ESRRG 3'UTR 0.09 TCGA-3N-A9WC-06 1 216680259 216680259 G A ESRRG 3'UTR 0.43 TCGA-3N-A9WC-06 1 216692626 216692626 C T ESRRG Missense_Mutation p.E346K 0.45 deleterious(0.03) benign(0.009) TCGA-3N-A9WC-06 1 21934827 21934827 G A RAP1GAP Missense_Mutation p.A456V 0.23 deleterious(0) possibly_damaging(0.619) TCGA-3N-A9WC-06 1 220170329 220170329 G A EPRS Missense_Mutation p.P846L 0.28 tolerated(0.09) benign(0.009) TCGA-3N-A9WC-06 1 220298661 220298661 C T IARS2 Missense_Mutation p.P575S 0.20 tolerated(0.06) possibly_damaging(0.536) TCGA-3N-A9WC-06 1 220789325 220789325 C T MARK1 Silent p.H180H 0.11 TCGA-3N-A9WC-06 1 22079531 22079531 G A USP48 Missense_Mutation p.P165L 0.25 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 22172627 22172627 G A HSPG2 Missense_Mutation p.S2813F 0.22 benign(0.127) TCGA-3N-A9WC-06 1 22202157 22202157 G A HSPG2 Silent p.I1089I 0.24 TCGA-3N-A9WC-06 1 223568052 223568052 C T C1orf65 Missense_Mutation p.A412V 0.09 tolerated(0.22) benign(0.075) TCGA-3N-A9WC-06 1 223568137 223568137 G A C1orf65 Silent p.Q440Q 0.10 TCGA-3N-A9WC-06 1 224804875 224804875 C T CNIH3 5'UTR 0.41 TCGA-3N-A9WC-06 1 227083199 227083199 C T PSEN2 Silent p.F422F 0.32 TCGA-3N-A9WC-06 1 228247854 228247854 G A WNT3A 3'UTR 0.26 TCGA-3N-A9WC-06 1 228479705 228479705 G A OBSCN Silent p.R3911R 0.41 TCGA-3N-A9WC-06 1 22848910 22848910 C T ZBTB40 Silent p.F1084F 0.17 TCGA-3N-A9WC-06 1 228491502 228491502 G A OBSCN Missense_Mutation p.R4622K 0.18 benign(0.091) TCGA-3N-A9WC-06 1 228505419 228505419 G A OBSCN Missense_Mutation p.E5563K 0.17 probably_damaging(0.956) TCGA-3N-A9WC-06 1 228559449 228559449 C T OBSCN Silent p.S7947S 0.08 TCGA-3N-A9WC-06 1 22915689 22915689 G A EPHA8 Silent p.T435T 0.17 TCGA-3N-A9WC-06 1 229730512 229730512 G A TAF5L Silent p.F434F 0.40 TCGA-3N-A9WC-06 1 22974028 22974028 G C C1QC Missense_Mutation p.G164R 0.16 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 230492643 230492643 G A PGBD5 Silent p.T183T 0.40 TCGA-3N-A9WC-06 1 230845796 230845796 C T AGT Silent p.L267L 0.45 TCGA-3N-A9WC-06 1 231374719 231374719 G A C1orf131 Missense_Mutation p.L112F 0.44 tolerated(0.73) possibly_damaging(0.532) TCGA-3N-A9WC-06 1 233275472 233275472 C T PCNXL2 Missense_Mutation p.R1216K 0.24 tolerated(1) benign(0.004) TCGA-3N-A9WC-06 1 233393880 233393880 G A PCNXL2 Silent p.F576F 0.13 TCGA-3N-A9WC-06 1 233394459 233394459 G A PCNXL2 Silent p.T383T 0.31 TCGA-3N-A9WC-06 1 233490722 233490722 C T MLK4 Nonsense_Mutation p.Q426* 0.49 TCGA-3N-A9WC-06 1 234454555 234454555 C T SLC35F3 Missense_Mutation p.S338F 0.05 deleterious(0) probably_damaging(0.988) TCGA-3N-A9WC-06 1 23520401 23520401 C T HTR1D Nonsense_Mutation p.W104* 0.20 TCGA-3N-A9WC-06 1 235505831 235505831 C T GGPS1 Missense_Mutation p.P216L 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-3N-A9WC-06 1 237664147 237664147 G A RYR2 Silent p.E780E 0.37 TCGA-3N-A9WC-06 1 237870293 237870293 C T RYR2 Missense_Mutation p.P3209S 0.19 benign(0.162) TCGA-3N-A9WC-06 1 240255728 240255728 G A FMN2 Missense_Mutation p.E107K 0.22 unknown(0) TCGA-3N-A9WC-06 1 240286568 240286568 G A FMN2 Missense_Mutation p.G569S 0.29 unknown(0) TCGA-3N-A9WC-06 1 240374415 240374415 G A FMN2 Nonsense_Mutation p.W1315* 0.28 TCGA-3N-A9WC-06 1 240374523 240374523 G A FMN2 Silent p.T1351T 0.35 TCGA-3N-A9WC-06 1 240492436 240492436 G A FMN2 Missense_Mutation p.E1426K 0.09 possibly_damaging(0.667) TCGA-3N-A9WC-06 1 240519181 240519181 G A FMN2 Missense_Mutation p.E1611K 0.17 possibly_damaging(0.515) TCGA-3N-A9WC-06 1 246927630 246927630 T G SCCPDH Missense_Mutation p.I358S 0.27 tolerated(0.61) benign(0.005) TCGA-3N-A9WC-06 1 247050591 247050591 G A AHCTF1 Silent p.F807F 0.34 TCGA-3N-A9WC-06 1 247163252 247163252 A T ZNF695 Missense_Mutation p.L43H 0.12 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 1 247752369 247752369 G A OR2G2 Silent p.R236R 0.24 TCGA-3N-A9WC-06 1 247768980 247768980 C T OR2G3 Silent p.V31V 0.16 TCGA-3N-A9WC-06 1 247836088 247836088 C T OR13G1 Missense_Mutation p.E86K 0.45 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 1 247875469 247875469 G A OR6F1 Missense_Mutation p.L197F 0.27 tolerated(0.07) possibly_damaging(0.691) TCGA-3N-A9WC-06 1 248004962 248004962 G A OR11L1 Silent p.P79P 0.19 TCGA-3N-A9WC-06 1 248224664 248224664 G A OR2L3 Missense_Mutation p.M227I 0.33 deleterious(0.05) benign(0.17) TCGA-3N-A9WC-06 1 248308692 248308692 G A OR2M5 Missense_Mutation p.M81I 0.15 deleterious(0.03) benign(0.033) TCGA-3N-A9WC-06 1 248436916 248436916 C T OR2T33 Missense_Mutation p.M67I 0.38 tolerated(0.06) benign(0.19) TCGA-3N-A9WC-06 1 24859660 24859660 C T RCAN3 Missense_Mutation p.P153S 0.31 deleterious(0.02) probably_damaging(0.938) TCGA-3N-A9WC-06 1 25233753 25233753 G A RUNX3 Nonsense_Mutation p.Q248* 0.18 TCGA-3N-A9WC-06 1 25233754 25233754 G A RUNX3 Silent p.I247I 0.20 TCGA-3N-A9WC-06 1 25815784 25815784 G T TMEM57 Missense_Mutation p.Q539H 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-3N-A9WC-06 1 26080018 26080018 C T MAN1C1 Missense_Mutation p.P293L 0.09 deleterious(0) probably_damaging(0.986) TCGA-3N-A9WC-06 1 26873435 26873435 C T RPS6KA1 Silent p.F71F 0.14 TCGA-3N-A9WC-06 1 26873464 26873464 C T RPS6KA1 Missense_Mutation p.S81F 0.17 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WC-06 1 27338932 27338932 G A FAM46B Missense_Mutation p.P77L 0.41 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 27480769 27480769 T C SLC9A1 Silent p.L19L 0.13 TCGA-3N-A9WC-06 1 28086074 28086074 C T FAM76A Missense_Mutation p.S292L 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-3N-A9WC-06 1 31346159 31346159 G A SDC3 Missense_Mutation p.R410C 0.19 deleterious(0) unknown(0) TCGA-3N-A9WC-06 1 31656670 31656670 G A NKAIN1 Silent p.F155F 0.18 TCGA-3N-A9WC-06 1 32205124 32205124 G A BAI2 Silent p.F760F 0.13 TCGA-3N-A9WC-06 1 33360273 33360273 T C TMEM54 3'UTR 0.29 TCGA-3N-A9WC-06 1 33988920 33988920 G A CSMD2 Missense_Mutation p.A3355V 0.22 deleterious(0) benign(0.13) TCGA-3N-A9WC-06 1 34011696 34011696 G A CSMD2 Missense_Mutation p.S2870L 0.32 deleterious(0) possibly_damaging(0.74) TCGA-3N-A9WC-06 1 34128683 34128683 G A CSMD2 Silent p.F1314F 0.18 TCGA-3N-A9WC-06 1 34174715 34174715 C T CSMD2 Missense_Mutation p.E1144K 0.24 tolerated(0.06) benign(0.166) TCGA-3N-A9WC-06 1 34174848 34174848 C T CSMD2 Silent p.G1099G 0.26 TCGA-3N-A9WC-06 1 34208985 34208985 C T CSMD2 Missense_Mutation p.G650E 0.24 deleterious(0) probably_damaging(0.978) TCGA-3N-A9WC-06 1 34662964 34662964 G A C1orf94 Silent p.G153G 0.33 TCGA-3N-A9WC-06 1 34677838 34677838 G A C1orf94 Missense_Mutation p.G518R 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-3N-A9WC-06 1 3519055 3519055 C T MEGF6 Missense_Mutation p.A81T 0.23 tolerated(0.59) benign(0.15) TCGA-3N-A9WC-06 1 35653648 35653648 G A SFPQ Missense_Mutation p.R581C 0.18 deleterious(0) possibly_damaging(0.633) TCGA-3N-A9WC-06 1 35827351 35827351 A T ZMYM4 Silent p.G267G 0.17 TCGA-3N-A9WC-06 1 35827352 35827352 C T ZMYM4 Silent p.L268L 0.17 TCGA-3N-A9WC-06 1 3607438 3607438 C T TP73 Intron 0.36 TCGA-3N-A9WC-06 1 36096883 36096883 G A PSMB2 Missense_Mutation p.R93W 0.24 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 1 36228053 36228053 G A CLSPN Silent p.V258V 0.22 TCGA-3N-A9WC-06 1 36645654 36645654 C T MAP7D1 Missense_Mutation p.S834F 0.28 benign(0.184) TCGA-3N-A9WC-06 1 37270649 37270649 G A GRIK3 Missense_Mutation p.S835F 0.26 deleterious(0) probably_damaging(0.927) TCGA-3N-A9WC-06 1 40769221 40769221 G A COL9A2 Missense_Mutation p.P510L 0.17 deleterious(0.03) benign(0.241) TCGA-3N-A9WC-06 1 40881031 40881031 C T SMAP2 Missense_Mutation p.P220L 0.20 deleterious(0) benign(0.002) TCGA-3N-A9WC-06 1 43748717 43748717 C T C1orf210 Silent p.G27G 0.37 TCGA-3N-A9WC-06 1 43779062 43779062 G A TIE1 Nonsense_Mutation p.W728* 0.23 TCGA-3N-A9WC-06 1 43902975 43902975 C T SZT2 Silent p.P1999P 0.29 TCGA-3N-A9WC-06 1 43908504 43908504 C T SZT2 Silent p.F2665F 0.23 TCGA-3N-A9WC-06 1 44137287 44137287 C T KDM4A Missense_Mutation p.P492L 0.41 tolerated(0.13) benign(0.002) TCGA-3N-A9WC-06 1 45221777 45221777 C T KIF2C Missense_Mutation p.S282F 0.17 deleterious(0.01) benign(0.072) TCGA-3N-A9WC-06 1 46879243 46879243 C T FAAH Missense_Mutation p.S579F 0.24 deleterious(0) probably_damaging(0.991) TCGA-3N-A9WC-06 1 47279237 47279237 G A CYP4B1 Missense_Mutation p.M193I 0.26 deleterious(0.01) benign(0.106) TCGA-3N-A9WC-06 1 47403719 47403719 G A CYP4A11 Missense_Mutation p.R96C 0.30 tolerated(0.09) benign(0.035) TCGA-3N-A9WC-06 1 47515792 47515792 C T CYP4X1 Silent p.I492I 0.31 TCGA-3N-A9WC-06 1 47534380 47534380 G A CYP4Z1 Silent p.T88T 0.30 TCGA-3N-A9WC-06 1 52825807 52825807 G A CC2D1B Silent p.P234P 0.21 TCGA-3N-A9WC-06 1 52825808 52825808 G A CC2D1B Missense_Mutation p.P234L 0.21 deleterious(0.04) benign(0.004) TCGA-3N-A9WC-06 1 53427189 53427189 C T SCP2 Silent p.T137T 0.23 TCGA-3N-A9WC-06 1 54060494 54060494 C T GLIS1 Missense_Mutation p.G28S 0.55 tolerated_low_confidence(0.05) benign(0.012) TCGA-3N-A9WC-06 1 54418104 54418104 C T LRRC42 Silent p.A144A 0.35 TCGA-3N-A9WC-06 1 54605189 54605189 G A CDCP2 3'UTR 0.30 TCGA-3N-A9WC-06 1 54661168 54661168 T C CYB5RL Missense_Mutation p.Y41C 0.31 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 55078340 55078340 A C FAM151A Missense_Mutation p.S207A 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WC-06 1 55152008 55152008 C T MROH7 Silent p.L866L 0.24 TCGA-3N-A9WC-06 1 55152009 55152009 C T MROH7 Silent p.L867L 0.24 TCGA-3N-A9WC-06 1 55152110 55152110 C T MROH7 Silent p.F900F 0.21 TCGA-3N-A9WC-06 1 55174707 55174707 G A MROH7 Missense_Mutation p.E1230K 0.21 tolerated(0.08) benign(0.053) TCGA-3N-A9WC-06 1 57185942 57185942 C T C1orf168 Missense_Mutation p.G679R 0.21 tolerated(0.07) probably_damaging(1) TCGA-3N-A9WC-06 1 57209866 57209866 C T C1orf168 Silent p.S487S 0.30 TCGA-3N-A9WC-06 1 57257932 57257932 T A C1orf168 Missense_Mutation p.K185M 0.29 tolerated(0.11) benign(0.149) TCGA-3N-A9WC-06 1 57341767 57341767 G A C8A Missense_Mutation p.G117R 0.29 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 57378172 57378172 G A C8A Missense_Mutation p.E493K 0.31 deleterious(0) possibly_damaging(0.721) TCGA-3N-A9WC-06 1 57476912 57476912 G A DAB1 Missense_Mutation p.S493F 0.25 tolerated(0.12) probably_damaging(0.999) TCGA-3N-A9WC-06 1 57480782 57480782 G A DAB1 Silent p.P406P 0.29 TCGA-3N-A9WC-06 1 57602257 57602257 T C DAB1 Missense_Mutation p.I89V 0.27 tolerated(0.84) benign(0.001) TCGA-3N-A9WC-06 1 57756708 57756708 T C DAB1 5'UTR 0.28 TCGA-3N-A9WC-06 1 57756709 57756709 T C DAB1 5'UTR 0.28 TCGA-3N-A9WC-06 1 59042219 59042219 C T TACSTD2 Missense_Mutation p.E204K 0.31 tolerated(0.1) possibly_damaging(0.591) TCGA-3N-A9WC-06 1 60520963 60520963 C T C1orf87 Silent p.E85E 0.30 TCGA-3N-A9WC-06 1 6206430 6206430 C T CHD5 Missense_Mutation p.M548I 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-3N-A9WC-06 1 62626675 62626675 C T INADL 3'UTR 0.23 TCGA-3N-A9WC-06 1 62739635 62739635 C T KANK4 Missense_Mutation p.E381K 0.31 deleterious(0.02) possibly_damaging(0.803) TCGA-3N-A9WC-06 1 63885054 63885054 T C ALG6 Missense_Mutation p.L334P 0.22 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 1 64515521 64515521 C T ROR1 Missense_Mutation p.R108W 0.22 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WC-06 1 64515542 64515542 C T ROR1 Missense_Mutation p.R115W 0.17 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 1 65124444 65124444 G A CACHD1 Silent p.V562V 0.33 TCGA-3N-A9WC-06 1 65157044 65157044 C T CACHD1 Missense_Mutation p.P1158S 0.39 tolerated(0.07) benign(0.132) TCGA-3N-A9WC-06 1 66074455 66074455 C T LEPR Silent p.S541S 0.49 TCGA-3N-A9WC-06 1 67137628 67137628 T C SGIP1 Silent p.S170S 0.31 TCGA-3N-A9WC-06 1 67889935 67889935 C T SERBP1 Missense_Mutation p.E256K 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 1 70716300 70716300 C A SRSF11 Silent p.R423R 0.26 TCGA-3N-A9WC-06 1 74507370 74507370 C T LRRIQ3 Missense_Mutation p.M415I 0.28 tolerated(1) benign(0.002) TCGA-3N-A9WC-06 1 74819032 74819032 G A FPGT-TNNI3K Missense_Mutation p.D453N 0.30 deleterious(0) possibly_damaging(0.906) TCGA-3N-A9WC-06 1 75038333 75038333 C T C1orf173 Missense_Mutation p.E1021K 0.26 tolerated_low_confidence(0.23) benign(0.001) TCGA-3N-A9WC-06 1 77759502 77759502 C T AK5 Missense_Mutation p.P91L 0.20 deleterious(0) probably_damaging(0.974) TCGA-3N-A9WC-06 1 7887623 7887623 C T PER3 Silent p.F870F 0.29 TCGA-3N-A9WC-06 1 79002399 79002399 G A PTGFR 3'UTR 0.12 TCGA-3N-A9WC-06 1 79357294 79357294 G A ELTD1 Missense_Mutation p.S642L 0.26 deleterious(0) possibly_damaging(0.85) TCGA-3N-A9WC-06 1 82452624 82452624 G A LPHN2 Intron 0.24 TCGA-3N-A9WC-06 1 8420749 8420749 G A RERE Missense_Mutation p.P940S 0.33 unknown(0) TCGA-3N-A9WC-06 1 84878087 84878087 C T DNASE2B Silent p.T201T 0.28 TCGA-3N-A9WC-06 1 85592283 85592283 C T WDR63 Silent p.G734G 0.27 TCGA-3N-A9WC-06 1 85656010 85656010 C T SYDE2 Missense_Mutation p.E391K 0.32 tolerated_low_confidence(0.08) benign(0.08) TCGA-3N-A9WC-06 1 86047087 86047087 G A CYR61 Missense_Mutation p.E35K 0.47 tolerated(0.31) benign(0.446) TCGA-3N-A9WC-06 1 87108233 87108233 G A RP4-651E10.4 Intron 0.26 TCGA-3N-A9WC-06 1 89250486 89250486 C T PKN2 Silent p.L384L 0.19 TCGA-3N-A9WC-06 1 90180224 90180224 C T LRRC8C Missense_Mutation p.P699S 0.13 tolerated(0.07) probably_damaging(0.996) TCGA-3N-A9WC-06 1 9098962 9098962 C T SLC2A5 Silent p.R341R 0.28 TCGA-3N-A9WC-06 1 9107775 9107775 G A SLC2A5 Silent p.F104F 0.29 TCGA-3N-A9WC-06 1 95356800 95356800 G A SLC44A3 Missense_Mutation p.D533N 0.29 tolerated(0.13) benign(0.075) TCGA-3N-A9WC-06 1 9661353 9661353 C T TMEM201 Missense_Mutation p.P266L 0.23 tolerated(0.52) benign(0.016) TCGA-3N-A9WC-06 1 98164968 98164968 C T DPYD Missense_Mutation p.A207T 0.21 deleterious(0) probably_damaging(0.963) TCGA-3N-A9WC-06 20 13763386 13763386 G A ESF1 Missense_Mutation p.S134F 0.16 deleterious_low_confidence(0.02) benign(0.012) TCGA-3N-A9WC-06 20 13765932 13765932 A T NDUFAF5 Missense_Mutation p.E73V 0.38 deleterious(0) benign(0.027) TCGA-3N-A9WC-06 20 1559323 1559323 C T RP4-576H24.4 Missense_Mutation p.E31K 0.43 deleterious(0.02) benign(0.403) TCGA-3N-A9WC-06 20 17716470 17716470 T C BANF2 3'UTR 0.18 TCGA-3N-A9WC-06 20 17970731 17970731 G A MGME1 Silent p.Q338Q 0.20 TCGA-3N-A9WC-06 20 18022365 18022365 G A OVOL2 Silent p.F108F 0.29 TCGA-3N-A9WC-06 20 18724798 18724798 C T DTD1 Missense_Mutation p.P178S 0.42 deleterious(0.05) benign(0.002) TCGA-3N-A9WC-06 20 18724799 18724799 C T DTD1 Missense_Mutation p.P178L 0.42 tolerated(0.06) benign(0.055) TCGA-3N-A9WC-06 20 2298098 2298098 G A TGM3 Missense_Mutation p.G317E 0.24 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 20 23017213 23017213 C T SSTR4 Missense_Mutation p.P365S 0.28 tolerated(0.07) benign(0.03) TCGA-3N-A9WC-06 20 23667824 23667824 C T CST4 Silent p.V81V 0.30 TCGA-3N-A9WC-06 20 24646195 24646195 G A SYNDIG1 3'UTR 0.11 TCGA-3N-A9WC-06 20 25187901 25187901 C T ENTPD6 Missense_Mutation p.R82W 0.23 deleterious(0.01) benign(0.009) TCGA-3N-A9WC-06 20 2591073 2591073 C T TMC2 Silent p.I474I 0.28 TCGA-3N-A9WC-06 20 2774947 2774947 G A CPXM1 Silent p.F698F 0.18 TCGA-3N-A9WC-06 20 29978277 29978277 G A DEFB119 Missense_Mutation p.L4F 0.27 tolerated(0.29) unknown(0) TCGA-3N-A9WC-06 20 31376687 31376687 C T DNMT3B Missense_Mutation p.L228F 0.22 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 20 31572943 31572943 A G SUN5 Missense_Mutation p.F316L 0.19 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 20 31671589 31671589 C T BPIFB4 Missense_Mutation p.L196F 0.27 deleterious(0.01) possibly_damaging(0.759) TCGA-3N-A9WC-06 20 31756986 31756986 G A BPIFA2 Missense_Mutation p.G12D 0.31 deleterious(0.01) probably_damaging(0.919) TCGA-3N-A9WC-06 20 34208644 34208644 G A SPAG4 Silent p.G372G 0.23 TCGA-3N-A9WC-06 20 36662296 36662296 C T RPRD1B 5'UTR 0.25 TCGA-3N-A9WC-06 20 3675094 3675094 G A SIGLEC1 Silent p.D1010D 0.21 TCGA-3N-A9WC-06 20 36999947 36999947 C T LBP Missense_Mutation p.S414F 0.23 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 20 37356709 37356709 G A SLC32A1 Silent p.E335E 0.24 TCGA-3N-A9WC-06 20 41400190 41400190 C T PTPRT Missense_Mutation p.R190K 0.30 tolerated(0.28) possibly_damaging(0.906) TCGA-3N-A9WC-06 20 42744466 42744466 C T JPH2 Missense_Mutation p.E617K 0.32 tolerated(0.76) benign(0) TCGA-3N-A9WC-06 20 43030017 43030017 G A HNF4A Missense_Mutation p.R2Q 0.29 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-3N-A9WC-06 20 44190829 44190829 G A WFDC8 Missense_Mutation p.S19F 0.25 tolerated(0.11) benign(0.096) TCGA-3N-A9WC-06 20 44666013 44666013 G A SLC12A5 Missense_Mutation p.E224K 0.31 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 20 45216730 45216730 G A SLC13A3 Silent p.F363F 0.18 TCGA-3N-A9WC-06 20 45242182 45242182 G A SLC13A3 Silent p.I98I 0.24 TCGA-3N-A9WC-06 20 45354274 45354274 C T SLC2A10 Missense_Mutation p.P200L 0.20 tolerated(0.34) benign(0.022) TCGA-3N-A9WC-06 20 45354454 45354454 C T SLC2A10 Missense_Mutation p.S260F 0.26 deleterious(0) possibly_damaging(0.83) TCGA-3N-A9WC-06 20 45354808 45354808 C T SLC2A10 Missense_Mutation p.P378L 0.14 tolerated(0.24) benign(0.049) TCGA-3N-A9WC-06 20 4679899 4679899 C T PRNP Silent p.L11L 0.26 TCGA-3N-A9WC-06 20 47267970 47267970 G A PREX1 Silent p.I873I 0.19 TCGA-3N-A9WC-06 20 47850178 47850178 C T DDX27 Missense_Mutation p.P433L 0.19 tolerated(0.67) benign(0.042) TCGA-3N-A9WC-06 20 47990402 47990402 G A KCNB1 Silent p.I565I 0.31 TCGA-3N-A9WC-06 20 5086865 5086865 G A TMEM230 Missense_Mutation p.S127F 0.34 tolerated(0.18) probably_damaging(0.914) TCGA-3N-A9WC-06 20 51870282 51870282 C T TSHZ2 Silent p.I95I 0.33 TCGA-3N-A9WC-06 20 52193234 52193234 G A ZNF217 Missense_Mutation p.S690F 0.27 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WC-06 20 52193236 52193236 T A ZNF217 Missense_Mutation p.L689F 0.26 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 20 5283349 5283349 C T PROKR2 Silent p.R164R 0.28 TCGA-3N-A9WC-06 20 55918610 55918610 C T SPO11 3'UTR 0.17 TCGA-3N-A9WC-06 20 57036016 57036016 T C APCDD1L Missense_Mutation p.T446A 0.34 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 20 57570740 57570740 G A CTSZ Silent p.I292I 0.24 TCGA-3N-A9WC-06 20 57768013 57768013 G A ZNF831 Missense_Mutation p.E647K 0.24 deleterious(0.01) possibly_damaging(0.734) TCGA-3N-A9WC-06 20 58519888 58519888 C T FAM217B Missense_Mutation p.S297L 0.26 tolerated(0.38) benign(0.009) TCGA-3N-A9WC-06 20 5903172 5903172 G A CHGB Missense_Mutation p.G128R 0.32 tolerated(0.09) probably_damaging(0.977) TCGA-3N-A9WC-06 20 60348174 60348174 G A CDH4 Nonsense_Mutation p.W171* 0.53 TCGA-3N-A9WC-06 20 60711813 60711813 G A PSMA7 3'UTR 0.29 TCGA-3N-A9WC-06 20 60986037 60986037 G A RBBP8NL Missense_Mutation p.S631F 0.24 tolerated(0.61) benign(0.434) TCGA-3N-A9WC-06 20 61444143 61444143 G A OGFR Silent p.R392R 0.22 TCGA-3N-A9WC-06 20 61468577 61468577 C T COL9A3 Silent p.Y582Y 0.30 TCGA-3N-A9WC-06 20 61468578 61468578 C T COL9A3 Missense_Mutation p.R583C 0.31 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 20 61951711 61951711 C T COL20A1 Silent p.L1048L 0.19 TCGA-3N-A9WC-06 20 62221626 62221626 T C GMEB2 Missense_Mutation p.K470R 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-3N-A9WC-06 20 8639341 8639341 C T PLCB1 Silent p.L284L 0.25 TCGA-3N-A9WC-06 20 9319581 9319581 C T PLCB4 Missense_Mutation p.S89L 0.28 tolerated(0.66) benign(0.046) TCGA-3N-A9WC-06 20 9449218 9449218 G A PLCB4 Silent p.R1071R 0.29 TCGA-3N-A9WC-06 20 9495508 9495508 C T LAMP5 Silent p.L3L 0.21 TCGA-3N-A9WC-06 20 9498794 9498794 C T LAMP5 Missense_Mutation p.P195S 0.18 tolerated(0.56) benign(0.009) TCGA-3N-A9WC-06 20 9546922 9546922 G A PAK7 Missense_Mutation p.S367F 0.28 deleterious(0.04) possibly_damaging(0.548) TCGA-3N-A9WC-06 20 9561085 9561085 G A PAK7 Nonsense_Mutation p.Q233* 0.42 TCGA-3N-A9WC-06 21 10862630 10862630 G A IGHV1OR21-1 Nonsense_Mutation p.W3* 0.11 TCGA-3N-A9WC-06 21 10863066 10863066 G T IGHV1OR21-1 Nonstop_Mutation p.*121Lext*? 0.08 TCGA-3N-A9WC-06 21 10942740 10942740 C T TPTE Missense_Mutation p.G234E 0.09 tolerated(0.06) probably_damaging(0.986) TCGA-3N-A9WC-06 21 10942755 10942755 C T TPTE Missense_Mutation p.R229Q 0.08 deleterious(0.04) probably_damaging(0.982) TCGA-3N-A9WC-06 21 14983023 14983023 C T POTED Silent p.I158I 0.54 TCGA-3N-A9WC-06 21 15537711 15537711 C T LIPI Missense_Mutation p.G266E 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 21 15599657 15599657 C T RBM11 3'UTR 0.35 TCGA-3N-A9WC-06 21 15884818 15884818 G A SAMSN1 Missense_Mutation p.S187F 0.30 tolerated(0.08) possibly_damaging(0.787) TCGA-3N-A9WC-06 21 15889218 15889218 C T SAMSN1 Missense_Mutation p.E160K 0.17 deleterious(0.02) possibly_damaging(0.759) TCGA-3N-A9WC-06 21 19666631 19666631 G A TMPRSS15 Silent p.L814L 0.30 TCGA-3N-A9WC-06 21 19725356 19725356 A - TMPRSS15 Frame_Shift_Del p.N346Ifs*15 0.18 TCGA-3N-A9WC-06 21 27945215 27945215 C T CYYR1 Silent p.P15P 0.29 TCGA-3N-A9WC-06 21 30329086 30329086 A G LTN1 Missense_Mutation p.I1072T 0.47 tolerated(0.58) benign(0.098) TCGA-3N-A9WC-06 21 30724074 30724074 G A BACH1-IT1 RNA 0.53 TCGA-3N-A9WC-06 21 37605173 37605173 T - DOPEY2 Frame_Shift_Del p.Y808Tfs*13 0.12 TCGA-3N-A9WC-06 21 37728994 37728994 C T MORC3 Missense_Mutation p.P394S 0.27 deleterious(0.02) benign(0.191) TCGA-3N-A9WC-06 21 39086980 39086980 G A KCNJ6 Silent p.I160I 0.20 TCGA-3N-A9WC-06 21 39671792 39671792 G T KCNJ15 Missense_Mutation p.R203S 0.35 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 21 41450762 41450762 C T DSCAM Nonsense_Mutation p.W1521* 0.37 TCGA-3N-A9WC-06 21 41450824 41450824 C T DSCAM Missense_Mutation p.D1501N 0.19 tolerated(0.81) benign(0.013) TCGA-3N-A9WC-06 21 42064836 42064836 C T DSCAM Missense_Mutation p.M136I 0.22 tolerated(0.26) benign(0.2) TCGA-3N-A9WC-06 21 42813839 42813839 C T MX1 Silent p.F309F 0.29 TCGA-3N-A9WC-06 21 42866441 42866441 G A TMPRSS2 Missense_Mutation p.P64L 0.25 deleterious(0.04) benign(0.192) TCGA-3N-A9WC-06 21 43508578 43508578 G A UMODL1 Missense_Mutation p.V260I 0.44 tolerated(1) benign(0) TCGA-3N-A9WC-06 21 45173594 45173594 C T PDXK Silent p.N251N 0.17 TCGA-3N-A9WC-06 21 45540277 45540277 G A PWP2 Missense_Mutation p.E413K 0.31 deleterious(0) possibly_damaging(0.85) TCGA-3N-A9WC-06 21 45680689 45680689 C T DNMT3L Missense_Mutation p.R47Q 0.29 tolerated(0.08) probably_damaging(0.986) TCGA-3N-A9WC-06 21 45711017 45711017 G A AIRE Missense_Mutation p.E307K 0.20 deleterious(0) probably_damaging(0.984) TCGA-3N-A9WC-06 21 45941993 45941993 C T TSPEAR Missense_Mutation p.D447N 0.34 tolerated(0.46) benign(0.007) TCGA-3N-A9WC-06 21 45987854 45987854 G A TSPEAR Missense_Mutation p.P40S 0.19 deleterious(0.05) benign(0.004) TCGA-3N-A9WC-06 21 46067190 46067190 C T KRTAP10-11 Missense_Mutation p.S272F 0.28 deleterious(0) possibly_damaging(0.788) TCGA-3N-A9WC-06 21 46101758 46101758 G A KRTAP12-1 Missense_Mutation p.S94F 0.15 deleterious(0) possibly_damaging(0.485) TCGA-3N-A9WC-06 21 47548826 47548826 G A COL6A2 Intron 0.17 TCGA-3N-A9WC-06 21 47548845 47548845 G A COL6A2 Intron 0.16 TCGA-3N-A9WC-06 21 47731476 47731476 G A C21orf58 Silent p.P205P 0.25 TCGA-3N-A9WC-06 21 47769615 47769615 G A PCNT Missense_Mutation p.E409K 0.36 benign(0.036) TCGA-3N-A9WC-06 21 47771403 47771403 C T PCNT Missense_Mutation p.R469C 0.25 benign(0.003) TCGA-3N-A9WC-06 21 47983773 47983773 C T DIP2A Silent p.I1364I 0.32 TCGA-3N-A9WC-06 22 18304934 18304934 G A MICAL3 Nonsense_Mutation p.Q1104* 0.16 TCGA-3N-A9WC-06 22 18979402 18979402 G A DGCR5 RNA 0.32 TCGA-3N-A9WC-06 22 19808126 19808126 G A GNB1L Silent p.L83L 0.30 TCGA-3N-A9WC-06 22 21141419 21141419 G A SERPIND1 3'UTR 0.16 TCGA-3N-A9WC-06 22 23165633 23165633 G A IGLV2-8 Missense_Mutation p.M68I 0.28 tolerated_low_confidence(0.28) benign(0.002) TCGA-3N-A9WC-06 22 23247198 23247198 C T IGLJ3 Silent p.T48T 0.07 TCGA-3N-A9WC-06 22 23438452 23438452 C T GNAZ Silent p.F190F 0.29 TCGA-3N-A9WC-06 22 23465539 23465539 C T GNAZ Missense_Mutation p.T330I 0.23 deleterious(0) probably_damaging(0.986) TCGA-3N-A9WC-06 22 23915393 23915393 G A IGLL1 3'UTR 0.23 TCGA-3N-A9WC-06 22 24921750 24921750 C T UPB1 Silent p.I381I 0.30 TCGA-3N-A9WC-06 22 25158427 25158427 G C PIWIL3 Missense_Mutation p.R14G 0.31 tolerated(0.13) unknown(0) TCGA-3N-A9WC-06 22 26164332 26164332 G A MYO18B Missense_Mutation p.R150K 0.32 tolerated_low_confidence(0.17) benign(0.031) TCGA-3N-A9WC-06 22 26688753 26688753 C T SEZ6L Missense_Mutation p.S159F 0.43 deleterious_low_confidence(0.01) benign(0.235) TCGA-3N-A9WC-06 22 26702042 26702042 G A SEZ6L Silent p.T482T 0.19 TCGA-3N-A9WC-06 22 26995483 26995483 G A CRYBB1 Missense_Mutation p.P244S 0.20 tolerated(0.11) benign(0.027) TCGA-3N-A9WC-06 22 29837919 29837919 G A RFPL1 Silent p.Q254Q 0.29 TCGA-3N-A9WC-06 22 30188516 30188516 G A ASCC2 Missense_Mutation p.T643I 0.29 deleterious(0) probably_damaging(0.926) TCGA-3N-A9WC-06 22 30733103 30733103 G A SF3A1 Missense_Mutation p.P673L 0.27 tolerated(0.38) probably_damaging(0.981) TCGA-3N-A9WC-06 22 31013435 31013435 C T TCN2 Silent p.S353S 0.26 TCGA-3N-A9WC-06 22 31332599 31332599 G A MORC2 Missense_Mutation p.P484S 0.23 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 22 31724849 31724849 G A PATZ1 Silent p.P523P 0.23 TCGA-3N-A9WC-06 22 31724850 31724850 G A PATZ1 Missense_Mutation p.P523L 0.21 tolerated(0.52) benign(0.008) TCGA-3N-A9WC-06 22 32756875 32756875 G A RFPL3 3'UTR 0.32 TCGA-3N-A9WC-06 22 36537740 36537740 G A APOL3 Silent p.I239I 0.29 TCGA-3N-A9WC-06 22 36678572 36678572 G A MYH9 3'UTR 0.27 TCGA-3N-A9WC-06 22 37322123 37322123 C T CSF2RB Missense_Mutation p.P99S 0.20 tolerated(0.13) benign(0.047) TCGA-3N-A9WC-06 22 37322124 37322124 C T CSF2RB Missense_Mutation p.P99L 0.20 deleterious(0.01) possibly_damaging(0.63) TCGA-3N-A9WC-06 22 37602645 37602645 G A SSTR3 Silent p.L400L 0.29 TCGA-3N-A9WC-06 22 38040933 38040933 C T SH3BP1 Silent p.A248A 0.32 TCGA-3N-A9WC-06 22 38150978 38150978 C T TRIOBP Missense_Mutation p.S1825F 0.33 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 22 38822793 38822793 C T KCNJ4 3'UTR 0.20 TCGA-3N-A9WC-06 22 39826247 39826247 C T TAB1 3'UTR 0.39 TCGA-3N-A9WC-06 22 39883511 39883511 T G MGAT3 Missense_Mutation p.N53K 0.25 tolerated_low_confidence(0.52) benign(0.021) TCGA-3N-A9WC-06 22 40056361 40056361 C T CACNA1I Missense_Mutation p.R873C 0.19 deleterious(0) possibly_damaging(0.689) TCGA-3N-A9WC-06 22 40075774 40075774 G A CACNA1I Silent p.L1814L 0.33 TCGA-3N-A9WC-06 22 41969686 41969686 G A CSDC2 Silent p.V68V 0.29 TCGA-3N-A9WC-06 22 41973259 41973259 G T PMM1 3'UTR 0.25 TCGA-3N-A9WC-06 22 42390716 42390716 C T SEPT3 Missense_Mutation p.P337S 0.27 tolerated(0.39) possibly_damaging(0.857) TCGA-3N-A9WC-06 22 43950754 43950754 C T EFCAB6 Missense_Mutation p.E1215K 0.25 deleterious(0.04) benign(0.177) TCGA-3N-A9WC-06 22 44395268 44395268 C T PARVB Silent p.F16F 0.21 TCGA-3N-A9WC-06 22 45309803 45309803 T C PHF21B Missense_Mutation p.S244G 0.33 tolerated(0.32) benign(0.011) TCGA-3N-A9WC-06 22 45571921 45571921 C T NUP50 Silent p.F100F 0.33 TCGA-3N-A9WC-06 22 46652392 46652392 C T PKDREJ 3'UTR 0.24 TCGA-3N-A9WC-06 22 46794451 46794451 G A CELSR1 Silent p.S1832S 0.19 TCGA-3N-A9WC-06 22 47433028 47433028 G A TBC1D22A Nonsense_Mutation p.W421* 0.29 TCGA-3N-A9WC-06 22 50216685 50216685 C T BRD1 Silent p.R427R 0.27 TCGA-3N-A9WC-06 22 50216686 50216686 C T BRD1 Missense_Mutation p.R427K 0.27 tolerated(0.51) benign(0.01) TCGA-3N-A9WC-06 22 50216993 50216993 G A BRD1 Silent p.L325L 0.36 TCGA-3N-A9WC-06 22 50515850 50515850 C T MLC1 Missense_Mutation p.E169K 0.26 tolerated_low_confidence(0.11) probably_damaging(0.994) TCGA-3N-A9WC-06 22 50537902 50537902 G A MOV10L1 Missense_Mutation p.D105N 0.27 tolerated(0.32) benign(0.006) TCGA-3N-A9WC-06 22 50615640 50615640 C T PANX2 Missense_Mutation p.R167W 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 22 50656448 50656448 C T TUBGCP6 Nonsense_Mutation p.W1756* 0.23 TCGA-3N-A9WC-06 22 50696332 50696332 C T MAPK12 Intron 0.16 TCGA-3N-A9WC-06 22 50926721 50926721 G A MIOX Missense_Mutation p.G120R 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 22 50926722 50926722 G A MIOX Missense_Mutation p.G120E 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 100210470 100210470 G A AFF3 Silent p.P576P 0.32 TCGA-3N-A9WC-06 2 101009854 101009854 G A CHST10 Silent p.I308I 0.26 TCGA-3N-A9WC-06 2 102842479 102842479 C T IL1RL2 Silent p.F371F 0.30 TCGA-3N-A9WC-06 2 103001436 103001436 G A IL18R1 Missense_Mutation p.E263K 0.29 deleterious(0.01) benign(0.422) TCGA-3N-A9WC-06 2 103141505 103141505 A G SLC9A4 Missense_Mutation p.N614S 0.22 tolerated(0.32) benign(0.026) TCGA-3N-A9WC-06 2 107041463 107041463 C T RGPD3 Missense_Mutation p.G987D 0.21 deleterious(0) possibly_damaging(0.599) TCGA-3N-A9WC-06 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.28 benign(0.002) TCGA-3N-A9WC-06 2 108487596 108487596 G A RGPD4 Missense_Mutation p.E1046K 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-3N-A9WC-06 2 112596022 112596022 G A ANAPC1 Missense_Mutation p.S703F 0.26 deleterious(0) possibly_damaging(0.878) TCGA-3N-A9WC-06 2 112767586 112767586 G A MERTK Missense_Mutation p.M674I 0.37 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 2 113326431 113326431 T G POLR1B Missense_Mutation p.F676V 0.26 deleterious(0) possibly_damaging(0.752) TCGA-3N-A9WC-06 2 11351870 11351870 G A ROCK2 Nonsense_Mutation p.R714* 0.32 TCGA-3N-A9WC-06 2 113675270 113675270 G A IL37 Silent p.P108P 0.30 TCGA-3N-A9WC-06 2 113785451 113785451 G A IL36B Intron 0.21 TCGA-3N-A9WC-06 2 113818504 113818504 G A IL36RN Silent p.K35K 0.22 TCGA-3N-A9WC-06 2 113940475 113940475 C T PSD4 Missense_Mutation p.R148W 0.33 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-3N-A9WC-06 2 113951213 113951213 G A PSD4 Missense_Mutation p.D693N 0.30 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 114257002 114257002 C T FOXD4L1 Missense_Mutation p.P57S 0.12 tolerated(0.15) benign(0.009) TCGA-3N-A9WC-06 2 116534824 116534824 G A DPP10 Missense_Mutation p.G425E 0.26 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 2 119748182 119748182 G A MARCO Missense_Mutation p.G361R 0.21 deleterious(0) unknown(0) TCGA-3N-A9WC-06 2 120005333 120005333 G A STEAP3 Missense_Mutation p.D201N 0.21 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 2 120231122 120231122 G C SCTR Missense_Mutation p.F104L 0.37 tolerated(0.34) benign(0.034) TCGA-3N-A9WC-06 2 120362452 120362452 G A PCDP1 Missense_Mutation p.E305K 0.30 deleterious(0.04) possibly_damaging(0.749) TCGA-3N-A9WC-06 2 120373224 120373224 T A PCDP1 Missense_Mutation p.I450N 0.38 tolerated(0.55) benign(0.098) TCGA-3N-A9WC-06 2 128341901 128341901 C T MYO7B Silent p.F516F 0.28 TCGA-3N-A9WC-06 2 128341908 128341908 G A MYO7B Splice_Site p.X518_splice 0.29 TCGA-3N-A9WC-06 2 128466341 128466341 G C WDR33 Missense_Mutation p.R1231G 0.32 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-3N-A9WC-06 2 128758009 128758009 G A SAP130 Nonsense_Mutation p.Q323* 0.28 TCGA-3N-A9WC-06 2 131520993 131520993 G A AMER3 Missense_Mutation p.G450R 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-3N-A9WC-06 2 133489448 133489448 G A NCKAP5 Missense_Mutation p.L1769F 0.22 deleterious(0) probably_damaging(0.985) TCGA-3N-A9WC-06 2 133540234 133540234 C T NCKAP5 Missense_Mutation p.G1384R 0.23 tolerated(0.2) possibly_damaging(0.804) TCGA-3N-A9WC-06 2 133540702 133540702 C T NCKAP5 Missense_Mutation p.A1228T 0.22 tolerated(0.23) benign(0.034) TCGA-3N-A9WC-06 2 135712106 135712106 C T CCNT2 Missense_Mutation p.T694I 0.20 deleterious(0.01) possibly_damaging(0.478) TCGA-3N-A9WC-06 2 139308072 139308072 C T SPOPL Missense_Mutation p.S33F 0.33 deleterious(0.01) possibly_damaging(0.87) TCGA-3N-A9WC-06 2 141079628 141079628 C T LRP1B Missense_Mutation p.E4182K 0.31 benign(0.305) TCGA-3N-A9WC-06 2 141607804 141607804 G A LRP1B Silent p.V1602V 0.28 TCGA-3N-A9WC-06 2 143742719 143742719 G A KYNU Missense_Mutation p.G266R 0.31 deleterious(0.01) probably_damaging(0.95) TCGA-3N-A9WC-06 2 145274858 145274858 G A ZEB2 Silent p.P20P 0.24 TCGA-3N-A9WC-06 2 145274859 145274859 G A ZEB2 Missense_Mutation p.P20L 0.24 deleterious(0) benign(0) TCGA-3N-A9WC-06 2 148715923 148715923 G A ORC4 Silent p.L111L 0.21 TCGA-3N-A9WC-06 2 153520661 153520661 C T PRPF40A Missense_Mutation p.G624S 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-3N-A9WC-06 2 155099411 155099411 G A GALNT13 Missense_Mutation p.E227K 0.23 tolerated(0.39) benign(0.012) TCGA-3N-A9WC-06 2 155265550 155265550 G A GALNT13 Missense_Mutation p.E451K 0.33 tolerated(0.57) benign(0.027) TCGA-3N-A9WC-06 2 159517826 159517826 C T PKP4 Intron 0.22 TCGA-3N-A9WC-06 2 160755315 160755315 C T LY75-CD302 Missense_Mutation p.G117E 0.40 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 2 160832701 160832701 G A PLA2R1 Missense_Mutation p.L825F 0.33 tolerated(0.11) benign(0.04) TCGA-3N-A9WC-06 2 160869838 160869838 G A PLA2R1 Nonsense_Mutation p.R534* 0.20 TCGA-3N-A9WC-06 2 162279997 162279997 C T TBR1 Silent p.F436F 0.23 TCGA-3N-A9WC-06 2 163374667 163374667 C T KCNH7 Silent p.R155R 0.13 TCGA-3N-A9WC-06 2 165381552 165381552 C T GRB14 Missense_Mutation p.E214K 0.22 deleterious(0) benign(0.184) TCGA-3N-A9WC-06 2 165948972 165948972 C T SCN3A Missense_Mutation p.M1533I 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-3N-A9WC-06 2 167055869 167055869 C T SCN9A Silent p.L1749L 0.22 TCGA-3N-A9WC-06 2 167151148 167151148 G A SCN9A Missense_Mutation p.S309F 0.32 deleterious(0.05) benign(0.006) TCGA-3N-A9WC-06 2 167263008 167263008 G A SCN7A Silent p.L1377L 0.30 TCGA-3N-A9WC-06 2 167298251 167298251 G A SCN7A Silent p.F604F 0.28 TCGA-3N-A9WC-06 2 168101549 168101549 C T XIRP2 Missense_Mutation p.S1216L 0.21 probably_damaging(1) TCGA-3N-A9WC-06 2 168101713 168101713 G A XIRP2 Missense_Mutation p.D1271N 0.23 benign(0.071) TCGA-3N-A9WC-06 2 168102448 168102448 G A XIRP2 Missense_Mutation p.E1516K 0.27 benign(0.238) TCGA-3N-A9WC-06 2 168103201 168103201 G A XIRP2 Missense_Mutation p.E1767K 0.33 probably_damaging(0.986) TCGA-3N-A9WC-06 2 168106743 168106743 C T XIRP2 Silent p.F2947F 0.19 TCGA-3N-A9WC-06 2 168107281 168107289 GAATCTACT - XIRP2 In_Frame_Del p.E3127_T3129del 0.26 TCGA-3N-A9WC-06 2 168107434 168107434 C T XIRP2 Missense_Mutation p.R3178C 0.38 benign(0.048) TCGA-3N-A9WC-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.45 TCGA-3N-A9WC-06 2 168115816 168115816 A G XIRP2 3'UTR 0.17 TCGA-3N-A9WC-06 2 169869905 169869905 A C ABCB11 Missense_Mutation p.V89G 0.25 tolerated(0.18) benign(0.155) TCGA-3N-A9WC-06 2 172604328 172604328 C T DYNC1I2 Nonsense_Mutation p.R616* 0.30 TCGA-3N-A9WC-06 2 177034015 177034015 C T HOXD3 Missense_Mutation p.S58F 0.19 tolerated(0.07) probably_damaging(0.948) TCGA-3N-A9WC-06 2 178494099 178494099 C T PDE11A 3'UTR 0.22 TCGA-3N-A9WC-06 2 179396737 179396737 C T TTN Missense_Mutation p.E34869K 0.36 TCGA-3N-A9WC-06 2 179403653 179403653 C T TTN Intron 0.35 TCGA-3N-A9WC-06 2 179433518 179433518 C T TTN Missense_Mutation p.D25781N 0.19 TCGA-3N-A9WC-06 2 179434856 179434856 C T TTN Missense_Mutation p.E25335K 0.34 TCGA-3N-A9WC-06 2 179438248 179438248 C A TTN Missense_Mutation p.G24204V 0.18 TCGA-3N-A9WC-06 2 179452026 179452026 C T TTN Silent p.E21304E 0.46 TCGA-3N-A9WC-06 2 179452653 179452653 C T TTN Missense_Mutation p.E21161K 0.25 TCGA-3N-A9WC-06 2 179454489 179454489 C T TTN Missense_Mutation p.E20655K 0.23 TCGA-3N-A9WC-06 2 179463254 179463254 T G TTN Missense_Mutation p.E19030D 0.20 TCGA-3N-A9WC-06 2 179485442 179485442 C T TTN Missense_Mutation p.E15299K 0.21 TCGA-3N-A9WC-06 2 179497405 179497405 C T TTN Missense_Mutation p.G14443E 0.24 TCGA-3N-A9WC-06 2 179542880 179542880 C T TTN Silent p.P11322P 0.31 TCGA-3N-A9WC-06 2 179578863 179578863 A C TTN Missense_Mutation p.V8841G 0.21 TCGA-3N-A9WC-06 2 179580376 179580376 C T TTN Missense_Mutation p.E8589K 0.20 TCGA-3N-A9WC-06 2 179597047 179597047 T A TTN Missense_Mutation p.E5550V 0.27 TCGA-3N-A9WC-06 2 179606265 179606265 C T TTN Missense_Mutation p.G3899R 0.20 TCGA-3N-A9WC-06 2 179610460 179610460 C T TTN Intron 0.28 TCGA-3N-A9WC-06 2 179611892 179611892 C T TTN Intron 0.27 TCGA-3N-A9WC-06 2 179611984 179611984 C T TTN Intron 0.16 TCGA-3N-A9WC-06 2 179612375 179612375 G A TTN Intron 0.24 TCGA-3N-A9WC-06 2 179613905 179613905 C T TTN Intron 0.21 TCGA-3N-A9WC-06 2 179616458 179616458 C T TTN Intron 0.26 TCGA-3N-A9WC-06 2 179639874 179639874 T - TTN Frame_Shift_Del p.D2189Tfs*17 0.19 TCGA-3N-A9WC-06 2 179642024 179642024 G A TTN Missense_Mutation p.P1556S 0.34 TCGA-3N-A9WC-06 2 179664261 179664261 G A TTN Silent p.S289S 0.21 TCGA-3N-A9WC-06 2 182358125 182358125 G A ITGA4 Silent p.G409G 0.20 TCGA-3N-A9WC-06 2 182392064 182392064 G A ITGA4 Missense_Mutation p.E794K 0.28 tolerated(0.29) benign(0.026) TCGA-3N-A9WC-06 2 182400213 182400213 G A ITGA4 Missense_Mutation p.D1020N 0.27 deleterious(0.02) benign(0.025) TCGA-3N-A9WC-06 2 182766501 182766501 C T SSFA2 Missense_Mutation p.R241C 0.35 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 2 185801011 185801011 A G ZNF804A Missense_Mutation p.I296M 0.31 tolerated(0.37) benign(0.001) TCGA-3N-A9WC-06 2 187703695 187703695 G A ZSWIM2 Missense_Mutation p.T162I 0.30 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 2 189925461 189925461 C T COL5A2 Missense_Mutation p.D694N 0.38 unknown(0) TCGA-3N-A9WC-06 2 192255044 192255044 C T MYO1B Missense_Mutation p.A603V 0.25 tolerated(0.1) probably_damaging(0.917) TCGA-3N-A9WC-06 2 1926254 1926254 C T MYT1L Silent p.G429G 0.42 TCGA-3N-A9WC-06 2 192711619 192711619 G A SDPR Silent p.F11F 0.30 TCGA-3N-A9WC-06 2 196718124 196718124 G A DNAH7 Silent p.I2908I 0.24 TCGA-3N-A9WC-06 2 197521415 197521415 C T CCDC150 Missense_Mutation p.P79S 0.22 deleterious(0.01) benign(0.069) TCGA-3N-A9WC-06 2 198950422 198950422 C T PLCL1 Silent p.I727I 0.27 TCGA-3N-A9WC-06 2 201478607 201478607 G A AOX1 Missense_Mutation p.G510E 0.22 deleterious(0.02) probably_damaging(0.932) TCGA-3N-A9WC-06 2 202002470 202002470 C T CFLAR Intron 0.17 TCGA-3N-A9WC-06 2 202900456 202900456 C T FZD7 Silent p.F362F 0.19 TCGA-3N-A9WC-06 2 203149136 203149136 A G NOP58 Silent p.Q122Q 0.38 TCGA-3N-A9WC-06 2 207026635 207026635 C T EEF1B2 Intron 0.20 TCGA-3N-A9WC-06 2 207162094 207162094 G A ZDBF2 Missense_Mutation p.S62N 0.25 tolerated(0.43) benign(0) TCGA-3N-A9WC-06 2 207174196 207174196 G A ZDBF2 Silent p.V1648V 0.32 TCGA-3N-A9WC-06 2 207459567 207459567 C T ADAM23 Nonsense_Mutation p.Q729* 0.22 TCGA-3N-A9WC-06 2 207460837 207460837 C T ADAM23 Silent p.I770I 0.31 TCGA-3N-A9WC-06 2 207509115 207509115 C T AC010731.4 RNA 0.37 TCGA-3N-A9WC-06 2 210557640 210557640 G A MAP2 Missense_Mutation p.G249D 0.28 tolerated_low_confidence(0.27) benign(0.007) TCGA-3N-A9WC-06 2 211421544 211421544 G A CPS1 Nonsense_Mutation p.W35* 0.33 TCGA-3N-A9WC-06 2 211473160 211473160 G A CPS1 Silent p.G762G 0.28 TCGA-3N-A9WC-06 2 21227160 21227160 T C APOB Missense_Mutation p.N4023S 0.33 benign(0.007) TCGA-3N-A9WC-06 2 21234197 21234197 G A APOB Missense_Mutation p.S1848L 0.42 benign(0.084) TCGA-3N-A9WC-06 2 212543883 212543883 G A ERBB4 Silent p.L506L 0.24 TCGA-3N-A9WC-06 2 213291063 213291063 C T ERBB4 Intron 0.28 TCGA-3N-A9WC-06 2 215818600 215818600 C T ABCA12 Missense_Mutation p.E2209K 0.41 tolerated(0.84) benign(0.094) TCGA-3N-A9WC-06 2 215884292 215884292 G A ABCA12 Missense_Mutation p.P506S 0.25 tolerated(0.07) benign(0.005) TCGA-3N-A9WC-06 2 217311749 217311749 G A SMARCAL1 Silent p.K573K 0.28 TCGA-3N-A9WC-06 2 217724751 217724751 T C TNP1 Missense_Mutation p.T3A 0.19 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-3N-A9WC-06 2 218700791 218700791 A C TNS1 Missense_Mutation p.S926A 0.11 deleterious(0) probably_damaging(0.989) TCGA-3N-A9WC-06 2 218700792 218700792 G C TNS1 Silent p.V925V 0.12 TCGA-3N-A9WC-06 2 219884367 219884367 C T CCDC108 Missense_Mutation p.D1112N 0.22 deleterious(0) probably_damaging(0.95) TCGA-3N-A9WC-06 2 220089208 220089208 G A ATG9A Silent p.I295I 0.18 TCGA-3N-A9WC-06 2 220286089 220286089 G A DES Missense_Mutation p.E351K 0.22 deleterious(0) possibly_damaging(0.843) TCGA-3N-A9WC-06 2 227896876 227896876 G A COL4A4 Missense_Mutation p.P1232S 0.28 unknown(0) TCGA-3N-A9WC-06 2 227920814 227920814 C T COL4A4 Missense_Mutation p.G855R 0.19 unknown(0) TCGA-3N-A9WC-06 2 227922185 227922185 G A COL4A4 Missense_Mutation p.P839S 0.42 unknown(0) TCGA-3N-A9WC-06 2 227946862 227946862 C T COL4A4 Silent p.A555A 0.20 TCGA-3N-A9WC-06 2 227979412 227979412 C T COL4A4 Missense_Mutation p.G164S 0.24 probably_damaging(1) TCGA-3N-A9WC-06 2 228788690 228788690 G A DAW1 3'UTR 0.26 TCGA-3N-A9WC-06 2 228855857 228855857 C T SPHKAP Silent p.R1606R 0.28 TCGA-3N-A9WC-06 2 228882192 228882192 G A SPHKAP Silent p.T1126T 0.39 TCGA-3N-A9WC-06 2 228883370 228883370 G A SPHKAP Missense_Mutation p.P734S 0.29 tolerated(1) benign(0.05) TCGA-3N-A9WC-06 2 228883584 228883584 G A SPHKAP Silent p.V662V 0.29 TCGA-3N-A9WC-06 2 228883629 228883629 G A SPHKAP Silent p.I647I 0.29 TCGA-3N-A9WC-06 2 228892248 228892248 C T SPHKAP Silent p.V86V 0.23 TCGA-3N-A9WC-06 2 230312173 230312173 C T DNER Missense_Mutation p.G449R 0.39 tolerated(0.83) benign(0.022) TCGA-3N-A9WC-06 2 231101933 231101933 G A SP140 Missense_Mutation p.M65I 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-3N-A9WC-06 2 231379974 231379974 C T SP100 Intron 0.25 TCGA-3N-A9WC-06 2 231774633 231774633 C T GPR55 3'UTR 0.33 TCGA-3N-A9WC-06 2 231775451 231775451 G A GPR55 Missense_Mutation p.S76F 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-3N-A9WC-06 2 233620982 233620982 G A GIGYF2 Missense_Mutation p.G106E 0.31 probably_damaging(0.98) TCGA-3N-A9WC-06 2 234580942 234580942 T A UGT1A9 Missense_Mutation p.F121Y 0.30 tolerated(0.55) benign(0.12) TCGA-3N-A9WC-06 2 234581070 234581070 C T UGT1A9 Missense_Mutation p.P164S 0.31 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 234750826 234750826 C T HJURP Silent p.K200K 0.22 TCGA-3N-A9WC-06 2 237300703 237300703 C T IQCA1 Silent p.L443L 0.35 TCGA-3N-A9WC-06 2 238289706 238289706 C T COL6A3 Silent p.G583G 0.30 TCGA-3N-A9WC-06 2 239237411 239237411 C T TRAF3IP1 Nonsense_Mutation p.Q147* 0.19 TCGA-3N-A9WC-06 2 241401674 241401674 G A GPC1 Missense_Mutation p.G131E 0.31 deleterious(0) probably_damaging(0.982) TCGA-3N-A9WC-06 2 241569594 241569594 C T GPR35 Silent p.F106F 0.18 TCGA-3N-A9WC-06 2 242572459 242572459 G A THAP4 Silent p.G371G 0.34 TCGA-3N-A9WC-06 2 242756239 242756239 G A NEU4 Missense_Mutation p.G131R 0.33 deleterious(0) possibly_damaging(0.876) TCGA-3N-A9WC-06 2 24538061 24538061 C T ITSN2 Missense_Mutation p.E22K 0.29 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 2 25982463 25982463 G A ASXL2 Missense_Mutation p.S276F 0.17 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 26998034 26998034 C T SLC35F6 Silent p.F91F 0.33 TCGA-3N-A9WC-06 2 27355997 27355997 G A PREB Silent p.V178V 0.27 TCGA-3N-A9WC-06 2 27564835 27564835 G A GTF3C2 Missense_Mutation p.P279S 0.14 tolerated(0.89) benign(0.001) TCGA-3N-A9WC-06 2 27801394 27801394 G A C2orf16 Missense_Mutation p.S652N 0.28 deleterious(0.03) benign(0.231) TCGA-3N-A9WC-06 2 29293507 29293507 G A C2orf71 Silent p.T1207T 0.29 TCGA-3N-A9WC-06 2 29293742 29293742 G A C2orf71 Missense_Mutation p.S1129F 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WC-06 2 29344298 29344298 C T CLIP4 Missense_Mutation p.P15L 0.30 tolerated(0.09) benign(0.002) TCGA-3N-A9WC-06 2 33413691 33413691 G A LTBP1 Missense_Mutation p.E492K 0.17 deleterious(0) possibly_damaging(0.83) TCGA-3N-A9WC-06 2 33745056 33745056 C T RASGRP3 Nonsense_Mutation p.R71* 0.33 TCGA-3N-A9WC-06 2 36986167 36986167 G A VIT Silent p.S155S 0.20 TCGA-3N-A9WC-06 2 37267645 37267645 G A HEATR5B Missense_Mutation p.S958L 0.22 deleterious(0) possibly_damaging(0.9) TCGA-3N-A9WC-06 2 37376139 37376139 G A EIF2AK2 5'UTR 0.22 TCGA-3N-A9WC-06 2 39347565 39347565 G A SOS1 5'UTR 0.48 TCGA-3N-A9WC-06 2 39487849 39487849 G A MAP4K3 Missense_Mutation p.P736S 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 44184566 44184566 G T LRPPRC Nonsense_Mutation p.S536* 0.27 TCGA-3N-A9WC-06 2 44548438 44548438 G A SLC3A1 3'UTR 0.27 TCGA-3N-A9WC-06 2 44600022 44600022 C T CAMKMT Silent p.S102S 0.37 TCGA-3N-A9WC-06 2 48914752 48914752 C T LHCGR 3'UTR 0.27 TCGA-3N-A9WC-06 2 49190018 49190018 C T FSHR Missense_Mutation p.E648K 0.36 tolerated(0.9) benign(0.002) TCGA-3N-A9WC-06 2 49210076 49210076 G A FSHR Missense_Mutation p.H215Y 0.28 tolerated(0.22) benign(0.004) TCGA-3N-A9WC-06 2 50149004 50149004 G A NRXN1 3'UTR 0.26 TCGA-3N-A9WC-06 2 50724620 50724620 C T NRXN1 Silent p.K950K 0.21 TCGA-3N-A9WC-06 2 50850546 50850546 C T NRXN1 Missense_Mutation p.G380E 0.28 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 54873099 54873099 C T SPTBN1 Missense_Mutation p.S1510F 0.30 deleterious(0) probably_damaging(0.991) TCGA-3N-A9WC-06 2 55200264 55200264 G A RTN4 3'UTR 0.26 TCGA-3N-A9WC-06 2 61304263 61304263 G A KIAA1841 Missense_Mutation p.E214K 0.20 tolerated(0.51) benign(0.023) TCGA-3N-A9WC-06 2 65243746 65243746 C T SLC1A4 Missense_Mutation p.P325S 0.09 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 2 65299865 65299865 C T CEP68 Silent p.L545L 0.33 TCGA-3N-A9WC-06 2 69472368 69472368 C T ANTXR1 Silent p.I482I 0.26 TCGA-3N-A9WC-06 2 70315035 70315035 T A PCBP1 Missense_Mutation p.C54S 0.23 tolerated(0.08) possibly_damaging(0.813) TCGA-3N-A9WC-06 2 70456423 70456423 G A TIA1 Missense_Mutation p.P84S 0.18 deleterious(0.04) benign(0.119) TCGA-3N-A9WC-06 2 70933465 70933465 C T ADD2 Missense_Mutation p.E26K 0.26 deleterious(0.02) benign(0.051) TCGA-3N-A9WC-06 2 71305453 71305453 C A NAGK Missense_Mutation p.L330I 0.24 tolerated(0.49) benign(0.023) TCGA-3N-A9WC-06 2 71895931 71895931 G A DYSF Silent p.R1835R 0.32 TCGA-3N-A9WC-06 2 72359544 72359544 G A CYP26B1 Silent p.L451L 0.30 TCGA-3N-A9WC-06 2 72359545 72359545 G A CYP26B1 Silent p.F450F 0.30 TCGA-3N-A9WC-06 2 73161002 73161002 G A EMX1 Silent p.K264K 0.30 TCGA-3N-A9WC-06 2 73161003 73161003 G A EMX1 Missense_Mutation p.G265S 0.30 tolerated(0.06) possibly_damaging(0.87) TCGA-3N-A9WC-06 2 73677355 73677355 C T ALMS1 Missense_Mutation p.P1233L 0.27 benign(0.002) TCGA-3N-A9WC-06 2 74089455 74089455 C T STAMBP 3'UTR 0.43 TCGA-3N-A9WC-06 2 74274885 74274885 C T TET3 Missense_Mutation p.P479L 0.20 tolerated(1) benign(0) TCGA-3N-A9WC-06 2 79363186 79363186 C T REG1P RNA 0.30 TCGA-3N-A9WC-06 2 85051267 85051267 G A TRABD2A Missense_Mutation p.P333S 0.19 tolerated(0.5) benign(0.006) TCGA-3N-A9WC-06 2 85051268 85051268 G A TRABD2A Silent p.V332V 0.19 TCGA-3N-A9WC-06 2 85866413 85866413 C T USP39 Missense_Mutation p.L395F 0.29 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 2 87012991 87012991 C T CD8A 3'UTR 0.27 TCGA-3N-A9WC-06 2 89117819 89117819 G A AC096579.13 RNA 0.26 TCGA-3N-A9WC-06 2 89117845 89117845 G A AC096579.13 RNA 0.24 TCGA-3N-A9WC-06 2 89399451 89399451 G A IGKV1-16 Silent p.F84F 0.28 TCGA-3N-A9WC-06 2 89442075 89442075 C T IGKV3-20 Silent p.Q110Q 0.37 TCGA-3N-A9WC-06 2 90121709 90121709 C T IGKV1D-17 Missense_Mutation p.P18S 0.31 tolerated(0.36) benign(0.126) TCGA-3N-A9WC-06 2 90212181 90212181 C T IGKV3D-11 Silent p.F91F 0.18 TCGA-3N-A9WC-06 2 95494922 95494922 G A ANKRD20A8P RNA 0.19 TCGA-3N-A9WC-06 2 95766623 95766623 A G MRPS5 Missense_Mutation p.V276A 0.20 tolerated(0.18) benign(0.038) TCGA-3N-A9WC-06 2 96789832 96789832 C T ASTL Silent p.L351L 0.26 TCGA-3N-A9WC-06 2 98986523 98986523 G A CNGA3 Missense_Mutation p.E29K 0.32 deleterious_low_confidence(0.02) benign(0.014) TCGA-3N-A9WC-06 2 98994228 98994228 C T CNGA3 Silent p.S60S 0.25 TCGA-3N-A9WC-06 3 100373976 100373976 G A GPR128 Missense_Mutation p.M559I 0.25 tolerated(0.1) possibly_damaging(0.721) TCGA-3N-A9WC-06 3 10302175 10302175 A C TATDN2 Missense_Mutation p.S257R 0.24 tolerated(0.83) benign(0.001) TCGA-3N-A9WC-06 3 105243280 105243280 G A ALCAM Missense_Mutation p.E108K 0.33 deleterious(0.05) benign(0.03) TCGA-3N-A9WC-06 3 105266231 105266231 C T ALCAM Intron 0.30 TCGA-3N-A9WC-06 3 108081237 108081237 T G HHLA2 Missense_Mutation p.V351G 0.33 tolerated(0.17) benign(0.002) TCGA-3N-A9WC-06 3 108394721 108394721 G C DZIP3 Splice_Site p.X927_splice 0.38 TCGA-3N-A9WC-06 3 108682306 108682306 C T MORC1 Silent p.K918K 0.14 TCGA-3N-A9WC-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.27 deleterious(0) possibly_damaging(0.906) TCGA-3N-A9WC-06 3 108705788 108705788 A G MORC1 Silent p.D732D 0.16 TCGA-3N-A9WC-06 3 109031515 109031515 C T DPPA2 Missense_Mutation p.D20N 0.29 deleterious(0.04) possibly_damaging(0.515) TCGA-3N-A9WC-06 3 11059122 11059122 G A SLC6A1 Silent p.G75G 0.21 TCGA-3N-A9WC-06 3 111603017 111603017 C T PHLDB2 Silent p.S31S 0.22 TCGA-3N-A9WC-06 3 111981857 111981857 C T SLC9C1 Missense_Mutation p.E371K 0.21 tolerated(0.13) probably_damaging(0.936) TCGA-3N-A9WC-06 3 119886321 119886321 G A GPR156 Missense_Mutation p.P668L 0.15 tolerated(0.18) benign(0.038) TCGA-3N-A9WC-06 3 120998780 120998780 G A STXBP5L Missense_Mutation p.R696Q 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-3N-A9WC-06 3 121712486 121712486 G A ILDR1 Silent p.H370H 0.30 TCGA-3N-A9WC-06 3 121720288 121720288 C T ILDR1 Silent p.V171V 0.41 TCGA-3N-A9WC-06 3 122545888 122545888 C T DIRC2 Missense_Mutation p.R227C 0.30 deleterious(0.01) possibly_damaging(0.54) TCGA-3N-A9WC-06 3 123444807 123444807 G A MYLK Silent p.I545I 0.30 TCGA-3N-A9WC-06 3 125643848 125643848 G A ALG1L 3'Flank 0.35 TCGA-3N-A9WC-06 3 128982806 128982806 C T COPG1 Silent p.V396V 0.19 TCGA-3N-A9WC-06 3 128982807 128982807 C T COPG1 Missense_Mutation p.L397F 0.19 deleterious(0) possibly_damaging(0.795) TCGA-3N-A9WC-06 3 129237949 129237949 G A IFT122 Splice_Site p.X1182_splice 0.20 TCGA-3N-A9WC-06 3 130159391 130159391 T A COL6A5 Missense_Mutation p.F2070Y 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 3 130187782 130187784 GCT CC COL6A5 Frame_Shift_Del p.A2312Pfs*3 0.18 TCGA-3N-A9WC-06 3 130425869 130425869 C A PIK3R4 Nonsense_Mutation p.E882* 0.26 TCGA-3N-A9WC-06 3 130686254 130686254 T G ATP2C1 Silent p.L467L 0.35 TCGA-3N-A9WC-06 3 134670741 134670741 C T EPHB1 Silent p.L218L 0.27 TCGA-3N-A9WC-06 3 13545681 13545681 T A HDAC11 Missense_Mutation p.L246H 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-3N-A9WC-06 3 136287640 136287640 T A STAG1 Missense_Mutation p.I121F 0.24 deleterious(0) possibly_damaging(0.835) TCGA-3N-A9WC-06 3 137483759 137483759 G A SOX14 Missense_Mutation p.E45K 0.40 deleterious(0) probably_damaging(0.968) TCGA-3N-A9WC-06 3 140277635 140277635 C T CLSTN2 Silent p.F659F 0.27 TCGA-3N-A9WC-06 3 140406817 140406817 G A TRIM42 Silent p.K431K 0.26 TCGA-3N-A9WC-06 3 140406818 140406818 G C TRIM42 Missense_Mutation p.E432Q 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-3N-A9WC-06 3 141497270 141497270 C T GRK7 Silent p.L48L 0.26 TCGA-3N-A9WC-06 3 14172403 14172403 C T TMEM43 Missense_Mutation p.P82S 0.30 tolerated(0.72) benign(0.01) TCGA-3N-A9WC-06 3 142279132 142279132 A G ATR Missense_Mutation p.V505A 0.21 tolerated_low_confidence(0.88) benign(0.001) TCGA-3N-A9WC-06 3 142567167 142567167 C T PCOLCE2 Missense_Mutation p.A114T 0.26 tolerated(0.22) benign(0.189) TCGA-3N-A9WC-06 3 1427434 1427434 G A CNTN6 Missense_Mutation p.G886E 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 3 143551009 143551009 C T SLC9A9 Missense_Mutation p.S77N 0.33 tolerated(0.75) benign(0.052) TCGA-3N-A9WC-06 3 14861661 14861661 C T FGD5 Silent p.S361S 0.27 TCGA-3N-A9WC-06 3 14939498 14939498 G A FGD5 Missense_Mutation p.D988N 0.34 tolerated(0.66) benign(0.144) TCGA-3N-A9WC-06 3 149459358 149459358 C T COMMD2 Missense_Mutation p.E184K 0.27 tolerated(0.89) benign(0.008) TCGA-3N-A9WC-06 3 151148166 151148166 C T MED12L Missense_Mutation p.S2128F 0.32 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-3N-A9WC-06 3 151154693 151154693 G A IGSF10 Silent p.A2552A 0.24 TCGA-3N-A9WC-06 3 151156190 151156190 C T IGSF10 Silent p.G2053G 0.32 TCGA-3N-A9WC-06 3 151598760 151598760 C T SUCNR1 Silent p.S143S 0.31 TCGA-3N-A9WC-06 3 15467811 15467811 G A METTL6 Silent p.L70L 0.21 TCGA-3N-A9WC-06 3 154834709 154834709 G A MME Silent p.G196G 0.29 TCGA-3N-A9WC-06 3 154898230 154898230 G A MME Silent p.K745K 0.33 TCGA-3N-A9WC-06 3 155205857 155205857 G A PLCH1 Missense_Mutation p.S848F 0.21 deleterious(0) probably_damaging(0.966) TCGA-3N-A9WC-06 3 155205872 155205872 C T PLCH1 Missense_Mutation p.G843E 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-3N-A9WC-06 3 155205873 155205873 C T PLCH1 Missense_Mutation p.G843R 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-3N-A9WC-06 3 155212010 155212010 C T PLCH1 Missense_Mutation p.R689Q 0.26 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 3 155212184 155212184 G A PLCH1 Missense_Mutation p.R661C 0.26 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 3 155267693 155267693 C T PLCH1 Silent p.K403K 0.24 TCGA-3N-A9WC-06 3 155286078 155286078 G A PLCH1 Silent p.I257I 0.25 TCGA-3N-A9WC-06 3 156746034 156746034 T C LEKR1 Missense_Mutation p.V504A 0.29 deleterious(0.02) benign(0.294) TCGA-3N-A9WC-06 3 158363984 158363984 A G GFM1 Missense_Mutation p.M89V 0.19 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WC-06 3 158527069 158527069 C T MFSD1 Missense_Mutation p.A230V 0.37 deleterious(0) benign(0.373) TCGA-3N-A9WC-06 3 159710814 159710814 G A IL12A Missense_Mutation p.E94K 0.23 tolerated(0.52) benign(0.001) TCGA-3N-A9WC-06 3 160395641 160395641 G A ARL14 Silent p.R169R 0.25 TCGA-3N-A9WC-06 3 161214933 161214933 G A OTOL1 Missense_Mutation p.G113E 0.16 deleterious(0.02) unknown(0) TCGA-3N-A9WC-06 3 16475358 16475358 C A RFTN1 Missense_Mutation p.R111I 0.29 deleterious(0) probably_damaging(0.98) TCGA-3N-A9WC-06 3 164773071 164773071 G C SI Missense_Mutation p.P475A 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-3N-A9WC-06 3 164906301 164906301 C T SLITRK3 Missense_Mutation p.G773E 0.25 tolerated(1) benign(0.102) TCGA-3N-A9WC-06 3 165491103 165491103 A T BCHE 3'UTR 0.50 TCGA-3N-A9WC-06 3 168810803 168810803 C T MECOM Missense_Mutation p.R913Q 0.24 deleterious(0.03) probably_damaging(0.913) TCGA-3N-A9WC-06 3 168833191 168833191 G A MECOM Silent p.F700F 0.29 TCGA-3N-A9WC-06 3 169540495 169540495 C T LRRIQ4 Silent p.I262I 0.25 TCGA-3N-A9WC-06 3 172835470 172835470 G A SPATA16 Missense_Mutation p.H18Y 0.25 tolerated_low_confidence(0.11) benign(0.009) TCGA-3N-A9WC-06 3 17333401 17333401 G A TBC1D5 Missense_Mutation p.L411F 0.13 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 3 180377360 180377360 C T CCDC39 Silent p.L206L 0.26 TCGA-3N-A9WC-06 3 18393535 18393535 G A SATB1 Silent p.H576H 0.22 TCGA-3N-A9WC-06 3 184009215 184009215 G A ECE2 Silent p.V821V 0.12 TCGA-3N-A9WC-06 3 185969597 185969597 C T DGKG Missense_Mutation p.G571E 0.22 deleterious(0.02) probably_damaging(1) TCGA-3N-A9WC-06 3 186282050 186282050 G A TBCCD1 Silent p.P23P 0.16 TCGA-3N-A9WC-06 3 186383867 186383867 C T HRG Missense_Mutation p.S16L 0.23 deleterious(0.01) benign(0.32) TCGA-3N-A9WC-06 3 189607257 189607257 G A TP63 Missense_Mutation p.D546N 0.35 deleterious(0.04) probably_damaging(0.958) TCGA-3N-A9WC-06 3 192516513 192516513 G A MB21D2 Missense_Mutation p.P380S 0.21 tolerated(0.21) possibly_damaging(0.857) TCGA-3N-A9WC-06 3 192992952 192992952 G A ATP13A5 Missense_Mutation p.S1179L 0.24 tolerated(0.05) benign(0.146) TCGA-3N-A9WC-06 3 193125153 193125153 G A ATP13A4 Silent p.A1109A 0.20 TCGA-3N-A9WC-06 3 195518163 195518163 C T MUC4 Missense_Mutation p.M96I 0.21 unknown(0) TCGA-3N-A9WC-06 3 195706683 195706683 C T SDHAP1 RNA 0.17 TCGA-3N-A9WC-06 3 196455596 196455596 T G PIGX Missense_Mutation p.F186V 0.38 tolerated_low_confidence(1) benign(0.003) TCGA-3N-A9WC-06 3 196455597 196455597 T A PIGX Missense_Mutation p.F186Y 0.39 tolerated_low_confidence(0.29) benign(0.204) TCGA-3N-A9WC-06 3 21552486 21552486 C T ZNF385D Silent p.T102T 0.25 TCGA-3N-A9WC-06 3 24206671 24206671 G A THRB Intron 0.31 TCGA-3N-A9WC-06 3 24231811 24231811 C T THRB Missense_Mutation p.A13T 0.33 deleterious_low_confidence(0.02) benign(0.004) TCGA-3N-A9WC-06 3 31661233 31661233 C T STT3B Missense_Mutation p.S413F 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 3 36873579 36873579 C T TRANK1 Missense_Mutation p.E2455K 0.20 tolerated(0.14) benign(0.019) TCGA-3N-A9WC-06 3 36896980 36896980 C T TRANK1 Silent p.E1367E 0.30 TCGA-3N-A9WC-06 3 36897045 36897045 C T TRANK1 Missense_Mutation p.E1346K 0.24 tolerated(0.08) benign(0.098) TCGA-3N-A9WC-06 3 38104198 38104198 C T DLEC1 Missense_Mutation p.P334S 0.27 deleterious(0.04) probably_damaging(0.976) TCGA-3N-A9WC-06 3 38592199 38592199 G A SCN5A Silent p.S1888S 0.27 TCGA-3N-A9WC-06 3 38592387 38592387 G A SCN5A Missense_Mutation p.R1826C 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WC-06 3 38592388 38592388 G A SCN5A Silent p.L1825L 0.30 TCGA-3N-A9WC-06 3 38618252 38618252 G A SCN5A Silent p.S1137S 0.46 TCGA-3N-A9WC-06 3 38739062 38739062 C T SCN10A Silent p.E1883E 0.36 TCGA-3N-A9WC-06 3 38739252 38739252 G A SCN10A Missense_Mutation p.S1820F 0.41 deleterious(0) possibly_damaging(0.62) TCGA-3N-A9WC-06 3 38797335 38797335 C G SCN10A Missense_Mutation p.G469R 0.33 tolerated(0.1) benign(0.014) TCGA-3N-A9WC-06 3 38797397 38797397 G A SCN10A Missense_Mutation p.S448L 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-3N-A9WC-06 3 38812814 38812814 C T SCN10A Silent p.L185L 0.28 TCGA-3N-A9WC-06 3 38888864 38888864 G A SCN11A Missense_Mutation p.S1566L 0.19 deleterious(0.03) benign(0.025) TCGA-3N-A9WC-06 3 39174604 39174604 C T TTC21A Missense_Mutation p.P882L 0.18 deleterious(0.03) probably_damaging(0.917) TCGA-3N-A9WC-06 3 39374634 39374634 G A CCR8 Missense_Mutation p.G271E 0.26 tolerated(0.05) probably_damaging(0.98) TCGA-3N-A9WC-06 3 40291800 40291800 C T MYRIP Nonsense_Mutation p.Q784* 0.14 TCGA-3N-A9WC-06 3 41288446 41288446 C T ULK4 Missense_Mutation p.E1268K 0.26 deleterious(0.01) benign(0.223) TCGA-3N-A9WC-06 3 42917025 42917025 C T CYP8B1 Missense_Mutation p.R95K 0.50 tolerated(0.42) benign(0.014) TCGA-3N-A9WC-06 3 44794865 44794865 G A KIAA1143 Missense_Mutation p.L145F 0.21 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 3 44952563 44952563 G A TGM4 Missense_Mutation p.E574K 0.27 deleterious(0.01) benign(0.177) TCGA-3N-A9WC-06 3 45127411 45127411 C T CDCP1 Missense_Mutation p.G744R 0.22 deleterious(0.02) probably_damaging(0.918) TCGA-3N-A9WC-06 3 45134810 45134810 G A CDCP1 Missense_Mutation p.S529F 0.29 tolerated(0.71) benign(0.01) TCGA-3N-A9WC-06 3 46786206 46786206 C T PRSS45 Missense_Mutation p.E14K 0.22 tolerated(0.38) benign(0.023) TCGA-3N-A9WC-06 3 47385187 47385187 C T KLHL18 Missense_Mutation p.A494V 0.21 tolerated(1) benign(0.014) TCGA-3N-A9WC-06 3 47385188 47385188 C T KLHL18 Silent p.A494A 0.21 TCGA-3N-A9WC-06 3 47449402 47449402 C T PTPN23 Missense_Mutation p.R381W 0.36 unknown(0) TCGA-3N-A9WC-06 3 48207328 48207328 G A CDC25A Missense_Mutation p.P362L 0.26 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 3 48610632 48610632 C T COL7A1 Missense_Mutation p.G2230E 0.23 probably_damaging(0.931) TCGA-3N-A9WC-06 3 49742579 49742579 C T RNF123 Missense_Mutation p.R708C 0.27 deleterious(0.01) possibly_damaging(0.724) TCGA-3N-A9WC-06 3 50416405 50416405 G A CACNA2D2 Missense_Mutation p.S427F 0.25 deleterious(0) probably_damaging(0.973) TCGA-3N-A9WC-06 3 51196695 51196695 G A DOCK3 Missense_Mutation p.M283I 0.23 deleterious(0.01) benign(0.013) TCGA-3N-A9WC-06 3 51395198 51395198 G A DOCK3 Missense_Mutation p.D1565N 0.24 tolerated(0.52) possibly_damaging(0.811) TCGA-3N-A9WC-06 3 51747068 51747068 T C GRM2 Missense_Mutation p.W344R 0.21 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 3 51937082 51937082 C T IQCF1 Silent p.T9T 0.19 TCGA-3N-A9WC-06 3 51979923 51979923 C T PARP3 Nonsense_Mutation p.Q363* 0.20 TCGA-3N-A9WC-06 3 52428668 52428668 A C DNAH1 Missense_Mutation p.E3605A 0.21 benign(0.063) TCGA-3N-A9WC-06 3 52428669 52428669 G A DNAH1 Silent p.E3605E 0.20 TCGA-3N-A9WC-06 3 52558459 52558459 G A STAB1 3'UTR 0.31 TCGA-3N-A9WC-06 3 55108152 55108152 G A CACNA2D3 Silent p.R1065R 0.30 TCGA-3N-A9WC-06 3 56026102 56026102 C T ERC2 Silent p.K746K 0.20 TCGA-3N-A9WC-06 3 56044593 56044593 C T ERC2 Missense_Mutation p.E602K 0.22 deleterious(0.01) benign(0.1) TCGA-3N-A9WC-06 3 56330079 56330079 G A ERC2 Nonsense_Mutation p.Q348* 0.37 TCGA-3N-A9WC-06 3 58089787 58089788 - G FLNB Frame_Shift_Ins p.H532Tfs*9 0.23 TCGA-3N-A9WC-06 3 63974000 63974000 G A ATXN7 Missense_Mutation p.R454K 0.25 deleterious(0.03) probably_damaging(0.931) TCGA-3N-A9WC-06 3 63974001 63974001 G A ATXN7 Splice_Site p.X454_splice 0.25 TCGA-3N-A9WC-06 3 65346842 65346842 G A MAGI1 Intron 0.31 TCGA-3N-A9WC-06 3 67058619 67058619 G A KBTBD8 Missense_Mutation p.R539Q 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-3N-A9WC-06 3 69078985 69078985 G T TMF1 Missense_Mutation p.L859M 0.28 tolerated(0.1) benign(0.209) TCGA-3N-A9WC-06 3 69230253 69230253 G A FRMD4B Missense_Mutation p.S883L 0.36 tolerated(0.07) benign(0.054) TCGA-3N-A9WC-06 3 7620472 7620472 G A GRM7 Missense_Mutation p.E627K 0.27 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 3 79639029 79639029 C T ROBO1 Missense_Mutation p.M11I 0.26 tolerated_low_confidence(1) benign(0) TCGA-3N-A9WC-06 3 85961591 85961591 C T CADM2 Nonsense_Mutation p.R193* 0.32 TCGA-3N-A9WC-06 3 89259118 89259118 C T EPHA3 Missense_Mutation p.P88S 0.34 tolerated(0.59) benign(0.026) TCGA-3N-A9WC-06 3 89468522 89468522 G A EPHA3 Missense_Mutation p.E686K 0.21 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 3 8977684 8977684 G A RAD18 Missense_Mutation p.R254C 0.25 deleterious(0) probably_damaging(0.953) TCGA-3N-A9WC-06 3 9489446 9489446 C T SETD5 Missense_Mutation p.S620F 0.29 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 3 9512478 9512478 C T SETD5 Silent p.S1020S 0.30 TCGA-3N-A9WC-06 3 9512479 9512479 C T SETD5 Missense_Mutation p.P1021S 0.26 tolerated(0.11) probably_damaging(0.998) TCGA-3N-A9WC-06 3 97185270 97185270 C T EPHA6 Intron 0.18 TCGA-3N-A9WC-06 3 97251204 97251204 G A EPHA6 Missense_Mutation p.E735K 0.23 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 3 97596253 97596253 C T CRYBG3 Missense_Mutation p.S124L 0.20 deleterious(0) benign(0.046) TCGA-3N-A9WC-06 3 97888247 97888247 G A OR5H15 Missense_Mutation p.R235K 0.25 tolerated(0.66) benign(0.02) TCGA-3N-A9WC-06 3 9920167 9920167 C T CIDEC Missense_Mutation p.E2K 0.28 deleterious(0.02) benign(0.325) TCGA-3N-A9WC-06 3 9920168 9920168 C T CIDEC Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.937) TCGA-3N-A9WC-06 4 101331494 101331494 C T EMCN Missense_Mutation p.G257E 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-3N-A9WC-06 4 1016256 1016256 C T FGFRL1 Silent p.V115V 0.27 TCGA-3N-A9WC-06 4 104510830 104510830 G A TACR3 3'UTR 0.48 TCGA-3N-A9WC-06 4 106616803 106616803 G A INTS12 Missense_Mutation p.S60L 0.44 tolerated(0.1) benign(0.013) TCGA-3N-A9WC-06 4 110865031 110865031 C T EGF Silent p.S181S 0.29 TCGA-3N-A9WC-06 4 110901281 110901281 C T EGF Missense_Mutation p.P736L 0.35 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 4 11400861 11400861 G A HS3ST1 Silent p.L257L 0.26 TCGA-3N-A9WC-06 4 114290873 114290873 C T ANK2 Missense_Mutation p.P3841L 0.41 possibly_damaging(0.704) TCGA-3N-A9WC-06 4 115792067 115792067 C T NDST4 Missense_Mutation p.D526N 0.46 deleterious(0) probably_damaging(0.984) TCGA-3N-A9WC-06 4 123350824 123350824 C T ADAD1 Missense_Mutation p.S554F 0.58 deleterious(0) possibly_damaging(0.892) TCGA-3N-A9WC-06 4 123664652 123664652 C T BBS12 Silent p.V535V 0.52 TCGA-3N-A9WC-06 4 126240310 126240310 C T FAT4 Missense_Mutation p.A915V 0.60 probably_damaging(1) TCGA-3N-A9WC-06 4 128694712 128694712 G A SLC25A31 Missense_Mutation p.D311N 0.43 tolerated(0.33) benign(0.308) TCGA-3N-A9WC-06 4 144918729 144918729 G A GYPB Silent p.I78I 0.55 TCGA-3N-A9WC-06 4 153784758 153784758 G A ARFIP1 Missense_Mutation p.D32N 0.63 deleterious(0.02) benign(0.047) TCGA-3N-A9WC-06 4 155219727 155219727 C T DCHS2 Silent p.R1458R 0.57 TCGA-3N-A9WC-06 4 155530818 155530818 G A FGG Silent p.I210I 0.53 TCGA-3N-A9WC-06 4 159091482 159091482 G A FAM198B Missense_Mutation p.L310F 0.59 deleterious(0.04) benign(0) TCGA-3N-A9WC-06 4 164271851 164271851 G A NPY5R Missense_Mutation p.M142I 0.56 tolerated(0.06) benign(0.009) TCGA-3N-A9WC-06 4 16504445 16504445 C T LDB2 Missense_Mutation p.E315K 0.54 deleterious(0.02) probably_damaging(0.962) TCGA-3N-A9WC-06 4 166910643 166910643 G A TLL1 Missense_Mutation p.G94S 0.54 tolerated(0.13) benign(0.032) TCGA-3N-A9WC-06 4 170057490 170057490 G A SH3RF1 Silent p.L349L 0.48 TCGA-3N-A9WC-06 4 170994384 170994384 G A AADAT Missense_Mutation p.P186L 0.50 tolerated(0.08) benign(0.047) TCGA-3N-A9WC-06 4 173930352 173930352 C T GALNTL6 Silent p.L465L 0.57 TCGA-3N-A9WC-06 4 175897089 175897089 C T ADAM29 Missense_Mutation p.P138L 0.49 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 4 183601841 183601841 G A TENM3 Missense_Mutation p.M595I 0.58 tolerated(0.19) benign(0.026) TCGA-3N-A9WC-06 4 183959055 183959055 G A FAM92A1P2 RNA 0.46 TCGA-3N-A9WC-06 4 185941727 185941727 C T HELT Missense_Mutation p.P262L 0.46 tolerated(0.17) benign(0.284) TCGA-3N-A9WC-06 4 188924035 188924035 C T ZFP42 Missense_Mutation p.A25V 0.51 tolerated(0.29) benign(0.038) TCGA-3N-A9WC-06 4 20618597 20618597 C T SLIT2 Silent p.F1304F 0.28 TCGA-3N-A9WC-06 4 20706397 20706397 C T PACRGL Missense_Mutation p.P56L 0.24 deleterious(0) probably_damaging(0.935) TCGA-3N-A9WC-06 4 22390180 22390180 G A GPR125 Silent p.F1038F 0.40 TCGA-3N-A9WC-06 4 24544582 24544582 G A DHX15 Missense_Mutation p.P439L 0.13 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 4 24544583 24544583 G A DHX15 Missense_Mutation p.P439S 0.13 deleterious(0.04) probably_damaging(0.977) TCGA-3N-A9WC-06 4 24878182 24878182 C A CCDC149 Silent p.L67L 0.41 TCGA-3N-A9WC-06 4 24878195 24878195 C G CCDC149 Missense_Mutation p.R63P 0.17 deleterious(0) probably_damaging(0.986) TCGA-3N-A9WC-06 4 25671403 25671403 G A SLC34A2 Missense_Mutation p.G257E 0.38 deleterious(0.02) possibly_damaging(0.566) TCGA-3N-A9WC-06 4 26483340 26483340 C T CCKAR Missense_Mutation p.E403K 0.24 deleterious(0.01) possibly_damaging(0.818) TCGA-3N-A9WC-06 4 36130297 36130297 G A ARAP2 Silent p.F1166F 0.15 TCGA-3N-A9WC-06 4 36230271 36230271 G A ARAP2 Nonsense_Mutation p.R280* 0.22 TCGA-3N-A9WC-06 4 39436046 39436046 T C KLB Silent p.L348L 0.22 TCGA-3N-A9WC-06 4 40121578 40121578 C T N4BP2 Missense_Mutation p.S616F 0.17 tolerated(0.27) benign(0.02) TCGA-3N-A9WC-06 4 40245507 40245507 C T RHOH Silent p.V167V 0.21 TCGA-3N-A9WC-06 4 40440384 40440384 T G RBM47 Missense_Mutation p.E176A 0.42 deleterious(0.04) probably_damaging(0.97) TCGA-3N-A9WC-06 4 40440575 40440575 G A RBM47 Silent p.G112G 0.28 TCGA-3N-A9WC-06 4 40440655 40440655 C T RBM47 Missense_Mutation p.E86K 0.12 tolerated(0.05) benign(0.073) TCGA-3N-A9WC-06 4 42403195 42403195 G A SHISA3 Missense_Mutation p.M148I 0.19 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WC-06 4 46042952 46042952 G A GABRG1 3'UTR 0.24 TCGA-3N-A9WC-06 4 46737006 46737006 G A COX7B2 Silent p.S68S 0.24 TCGA-3N-A9WC-06 4 47574956 47574956 G A ATP10D Missense_Mutation p.G1103E 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 4 48037691 48037691 G A NIPAL1 Silent p.L245L 0.34 TCGA-3N-A9WC-06 4 59341 59341 G A ZNF595 Missense_Mutation p.D8N 0.04 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-3N-A9WC-06 4 68458993 68458993 C T STAP1 Missense_Mutation p.L249F 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 4 6863940 6863940 C T KIAA0232 Missense_Mutation p.P611S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WC-06 4 69512815 69512815 G A UGT2B15 3'UTR 0.21 TCGA-3N-A9WC-06 4 69682041 69682041 G A UGT2B10 Missense_Mutation p.D102N 0.49 tolerated(0.35) benign(0.03) TCGA-3N-A9WC-06 4 69964312 69964312 G A UGT2B7 Missense_Mutation p.R259Q 0.38 deleterious(0.03) benign(0.416) TCGA-3N-A9WC-06 4 69974033 69974033 G A UGT2B7 Missense_Mutation p.D435N 0.42 tolerated(0.82) benign(0.052) TCGA-3N-A9WC-06 4 70079759 70079759 C T UGT2B11 Missense_Mutation p.D228N 0.33 tolerated(1) benign(0.019) TCGA-3N-A9WC-06 4 70079978 70079978 G A UGT2B11 Missense_Mutation p.P155S 0.36 deleterious(0.05) probably_damaging(1) TCGA-3N-A9WC-06 4 70080454 70080454 G A UGT2B11 5'Flank 0.42 TCGA-3N-A9WC-06 4 70465049 70465049 C T UGT2A1 Nonsense_Mutation p.W470* 0.23 TCGA-3N-A9WC-06 4 71113552 71113552 C G CSN3 Missense_Mutation p.N24K 0.31 deleterious(0.01) benign(0.213) TCGA-3N-A9WC-06 4 71471945 71471945 G A AMBN Missense_Mutation p.G281E 0.43 deleterious(0.01) probably_damaging(0.935) TCGA-3N-A9WC-06 4 74026952 74026952 G A ANKRD17 Missense_Mutation p.R221C 0.24 probably_damaging(0.948) TCGA-3N-A9WC-06 4 74274465 74274465 C T ALB Missense_Mutation p.P142L 0.48 deleterious(0.02) possibly_damaging(0.56) TCGA-3N-A9WC-06 4 77357305 77357305 G A SHROOM3 Missense_Mutation p.G34R 0.37 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 4 79391160 79391160 G A FRAS1 Missense_Mutation p.R2429Q 0.25 benign(0.002) TCGA-3N-A9WC-06 4 82125935 82125935 C T PRKG2 Silent p.Q89Q 0.36 TCGA-3N-A9WC-06 4 82126025 82126025 C T PRKG2 Silent p.S59S 0.30 TCGA-3N-A9WC-06 4 85605141 85605141 G A WDFY3 Silent p.D3227D 0.36 TCGA-3N-A9WC-06 4 90856775 90856775 C T MMRN1 Silent p.I648I 0.36 TCGA-3N-A9WC-06 4 9784321 9784321 G A DRD5 Missense_Mutation p.R223Q 0.26 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 4 9784524 9784524 G A DRD5 Missense_Mutation p.E291K 0.21 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 4 9785103 9785103 C T DRD5 3'UTR 0.32 TCGA-3N-A9WC-06 4 995280 995280 C T IDUA Missense_Mutation p.S173F 0.23 deleterious(0) probably_damaging(0.985) TCGA-3N-A9WC-06 5 102611898 102611898 C T C5orf30 Missense_Mutation p.S93F 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.466) TCGA-3N-A9WC-06 5 102611899 102611899 C T C5orf30 Silent p.S93S 0.26 TCGA-3N-A9WC-06 5 11117586 11117586 C T CTNND2 Silent p.L751L 0.23 TCGA-3N-A9WC-06 5 112175555 112175555 G A APC Missense_Mutation p.D1422N 0.20 probably_damaging(0.999) TCGA-3N-A9WC-06 5 121759038 121759038 C T SNCAIP Silent p.S202S 0.47 TCGA-3N-A9WC-06 5 121767754 121767754 C T SNCAIP Missense_Mutation p.H425Y 0.42 deleterious(0.02) possibly_damaging(0.74) TCGA-3N-A9WC-06 5 126993333 126993333 C T CTXN3 Silent p.F40F 0.37 TCGA-3N-A9WC-06 5 127595336 127595336 C T FBN2 Silent p.R2850R 0.37 TCGA-3N-A9WC-06 5 128301902 128301902 C T SLC27A6 Silent p.F24F 0.17 TCGA-3N-A9WC-06 5 129243933 129243933 C T CHSY3 Silent p.L322L 0.29 TCGA-3N-A9WC-06 5 131911514 131911514 C T RAD50 Missense_Mutation p.R87C 0.29 deleterious(0.01) benign(0.032) TCGA-3N-A9WC-06 5 132160304 132160304 T A SHROOM1 Intron 0.43 TCGA-3N-A9WC-06 5 132648442 132648442 C T FSTL4 Missense_Mutation p.E211K 0.62 tolerated(0.95) benign(0.018) TCGA-3N-A9WC-06 5 133295582 133295582 G A C5orf15 Missense_Mutation p.P90L 0.50 deleterious(0.02) benign(0.232) TCGA-3N-A9WC-06 5 133537709 133537709 G A PPP2CA Missense_Mutation p.R106C 0.29 deleterious(0) probably_damaging(0.963) TCGA-3N-A9WC-06 5 134039479 134039479 T G SEC24A Missense_Mutation p.F766C 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-3N-A9WC-06 5 134131815 134131815 T A DDX46 Silent p.S643S 0.46 TCGA-3N-A9WC-06 5 134785191 134785191 C T TIFAB Missense_Mutation p.E147K 0.42 deleterious(0.04) benign(0.074) TCGA-3N-A9WC-06 5 134785509 134785509 C T TIFAB Missense_Mutation p.G41R 0.15 deleterious(0) probably_damaging(0.98) TCGA-3N-A9WC-06 5 135231162 135231162 C T IL9 Splice_Site p.X51_splice 0.21 TCGA-3N-A9WC-06 5 135382092 135382092 G A TGFBI Missense_Mutation p.D123N 0.43 tolerated(0.1) possibly_damaging(0.642) TCGA-3N-A9WC-06 5 135610445 135610445 G A TRPC7 Silent p.I348I 0.30 TCGA-3N-A9WC-06 5 136993857 136993857 G A KLHL3 Missense_Mutation p.P289L 0.15 tolerated(0.1) benign(0.064) TCGA-3N-A9WC-06 5 137242036 137242036 C T PKD2L2 Silent p.F296F 0.45 TCGA-3N-A9WC-06 5 13735969 13735969 G A DNAH5 Missense_Mutation p.S3843L 0.29 benign(0.32) TCGA-3N-A9WC-06 5 137474363 137474363 C T NME5 Missense_Mutation p.R36K 0.23 tolerated(0.69) benign(0.008) TCGA-3N-A9WC-06 5 13753429 13753429 C T DNAH5 Silent p.T3595T 0.22 TCGA-3N-A9WC-06 5 13753502 13753502 G A DNAH5 Missense_Mutation p.P3571L 0.22 possibly_damaging(0.908) TCGA-3N-A9WC-06 5 137595306 137595306 C T GFRA3 Missense_Mutation p.D138N 0.42 tolerated(0.25) probably_damaging(0.983) TCGA-3N-A9WC-06 5 13766281 13766281 C T DNAH5 Missense_Mutation p.R3302K 0.23 benign(0) TCGA-3N-A9WC-06 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.28 TCGA-3N-A9WC-06 5 137780167 137780167 G A REEP2 Silent p.K82K 0.42 TCGA-3N-A9WC-06 5 138714959 138714959 C T SLC23A1 Missense_Mutation p.G341E 0.25 deleterious(0) probably_damaging(0.98) TCGA-3N-A9WC-06 5 138714960 138714960 C T SLC23A1 Missense_Mutation p.G341R 0.26 deleterious(0) probably_damaging(0.989) TCGA-3N-A9WC-06 5 138716263 138716263 C T SLC23A1 Silent p.R152R 0.28 TCGA-3N-A9WC-06 5 139267036 139267036 G A NRG2 Missense_Mutation p.S254L 0.19 tolerated(0.58) benign(0.37) TCGA-3N-A9WC-06 5 139742613 139742613 G A SLC4A9 Silent p.R332R 0.51 TCGA-3N-A9WC-06 5 140187038 140187038 G A PCDHA4 Missense_Mutation p.R89Q 0.17 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-3N-A9WC-06 5 140187787 140187787 G A PCDHA4 Missense_Mutation p.E339K 0.45 tolerated_low_confidence(0.33) benign(0.21) TCGA-3N-A9WC-06 5 140242231 140242231 C T AC005609.1 3'UTR 0.18 TCGA-3N-A9WC-06 5 140261997 140261997 C T PCDHA13 Silent p.I48I 0.18 TCGA-3N-A9WC-06 5 140347114 140347114 C T PCDHAC2 Missense_Mutation p.P255S 0.19 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 5 140389426 140389426 G A PCDHAC1 Silent p.K932K 0.18 TCGA-3N-A9WC-06 5 140432541 140432541 A C PCDHB1 Missense_Mutation p.N496H 0.26 deleterious(0.03) benign(0.438) TCGA-3N-A9WC-06 5 140433466 140433466 C T PCDHB1 Missense_Mutation p.S804F 0.37 deleterious(0.01) benign(0.224) TCGA-3N-A9WC-06 5 140557730 140557730 G A PCDHB8 Missense_Mutation p.E39K 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3N-A9WC-06 5 140558153 140558153 C T PCDHB8 Missense_Mutation p.R180W 0.21 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-3N-A9WC-06 5 140559192 140559192 A C PCDHB8 Missense_Mutation p.Q526P 0.11 deleterious_low_confidence(0.03) benign(0.018) TCGA-3N-A9WC-06 5 140562590 140562590 C T PCDHB16 Silent p.F152F 0.41 TCGA-3N-A9WC-06 5 140563970 140563970 C T PCDHB16 Silent p.P612P 0.38 TCGA-3N-A9WC-06 5 140589136 140589136 C T PCDHB12 Silent p.S219S 0.49 TCGA-3N-A9WC-06 5 140593996 140593996 G A PCDHB13 Missense_Mutation p.E101K 0.27 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-3N-A9WC-06 5 140745146 140745146 G A PCDHGA5 Missense_Mutation p.D417N 0.18 tolerated_low_confidence(0.47) benign(0.012) TCGA-3N-A9WC-06 5 140773957 140773957 G A PCDHGA8 Missense_Mutation p.R526Q 0.16 tolerated_low_confidence(0.4) benign(0.138) TCGA-3N-A9WC-06 5 140788771 140788771 C T PCDHGB6 Silent p.I334I 0.17 TCGA-3N-A9WC-06 5 1409210 1409210 G A SLC6A3 Missense_Mutation p.H477Y 0.30 deleterious(0.04) possibly_damaging(0.861) TCGA-3N-A9WC-06 5 141524180 141524180 C A NDFIP1 Silent p.R203R 0.38 TCGA-3N-A9WC-06 5 14280513 14280513 G A TRIO Silent p.R105R 0.29 TCGA-3N-A9WC-06 5 143586937 143586937 A T KCTD16 Missense_Mutation p.E220D 0.18 tolerated(0.42) benign(0.001) TCGA-3N-A9WC-06 5 143853452 143853452 C T KCTD16 Silent p.I354I 0.34 TCGA-3N-A9WC-06 5 145175884 145175884 A C PRELID2 Intron 0.57 TCGA-3N-A9WC-06 5 145317484 145317484 G A SH3RF2 5'UTR 0.40 TCGA-3N-A9WC-06 5 145435769 145435769 G A SH3RF2 Missense_Mutation p.M516I 0.16 tolerated(0.18) benign(0.009) TCGA-3N-A9WC-06 5 147029938 147029938 C T JAKMIP2 Missense_Mutation p.G267E 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-3N-A9WC-06 5 147029939 147029939 C T JAKMIP2 Missense_Mutation p.G267R 0.39 tolerated(0.09) probably_damaging(0.999) TCGA-3N-A9WC-06 5 147889126 147889126 G A HTR4 Silent p.F323F 0.38 TCGA-3N-A9WC-06 5 148627415 148627415 C T ABLIM3 Missense_Mutation p.P541L 0.23 deleterious(0) benign(0.137) TCGA-3N-A9WC-06 5 149011771 149011771 C T ARHGEF37 3'UTR 0.45 TCGA-3N-A9WC-06 5 149011772 149011772 C T ARHGEF37 3'UTR 0.47 TCGA-3N-A9WC-06 5 149375347 149375347 G A TIGD6 Missense_Mutation p.P189S 0.20 deleterious(0.03) probably_damaging(0.989) TCGA-3N-A9WC-06 5 149449831 149449831 G A CSF1R Silent p.I411I 0.18 TCGA-3N-A9WC-06 5 150666828 150666828 C T SLC36A3 Silent p.L270L 0.54 TCGA-3N-A9WC-06 5 153056575 153056575 G A GRIA1 Missense_Mutation p.D305N 0.66 deleterious(0.02) benign(0.112) TCGA-3N-A9WC-06 5 153085393 153085393 C T GRIA1 Missense_Mutation p.S540F 0.56 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 5 153085621 153085621 C T GRIA1 Missense_Mutation p.S616F 0.53 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 5 156810362 156810362 C T CYFIP2 Missense_Mutation p.P1042S 0.57 tolerated(0.18) benign(0.043) TCGA-3N-A9WC-06 5 160721128 160721128 G A GABRB2 Missense_Mutation p.S500F 0.42 tolerated(0.55) benign(0.178) TCGA-3N-A9WC-06 5 161117306 161117306 C T GABRA6 Missense_Mutation p.S258F 0.45 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 5 161128539 161128539 C T GABRA6 Silent p.I374I 0.55 TCGA-3N-A9WC-06 5 161128716 161128716 C T GABRA6 Silent p.N433N 0.53 TCGA-3N-A9WC-06 5 161317943 161317943 G A GABRA1 Missense_Mutation p.R248K 0.47 deleterious(0) possibly_damaging(0.609) TCGA-3N-A9WC-06 5 167626866 167626866 C T TENM2 Intron 0.58 TCGA-3N-A9WC-06 5 168151445 168151445 G A SLIT3 Missense_Mutation p.S772F 0.46 deleterious(0) possibly_damaging(0.484) TCGA-3N-A9WC-06 5 176859048 176859048 C T GRK6 Silent p.F67F 0.45 TCGA-3N-A9WC-06 5 180424365 180424365 G A BTNL3 Missense_Mutation p.D184N 0.62 tolerated(0.13) benign(0.072) TCGA-3N-A9WC-06 5 21975344 21975344 G A CDH12 Missense_Mutation p.R128C 0.21 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 5 24487962 24487962 G A CDH10 Missense_Mutation p.T726I 0.25 deleterious(0.02) benign(0.273) TCGA-3N-A9WC-06 5 24491860 24491860 C T CDH10 Silent p.V567V 0.27 TCGA-3N-A9WC-06 5 26885780 26885780 C T CDH9 Missense_Mutation p.A609T 0.30 tolerated(0.17) probably_damaging(0.989) TCGA-3N-A9WC-06 5 26890578 26890578 G A CDH9 Missense_Mutation p.S450L 0.30 tolerated(0.17) benign(0.037) TCGA-3N-A9WC-06 5 35026530 35026530 G A AGXT2 Silent p.F285F 0.18 TCGA-3N-A9WC-06 5 35072715 35072715 C T PRLR Missense_Mutation p.E169K 0.23 deleterious(0.03) probably_damaging(0.955) TCGA-3N-A9WC-06 5 35086404 35086404 G A PRLR Missense_Mutation p.R37C 0.21 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 5 35856997 35856997 C T IL7R 5'UTR 0.36 TCGA-3N-A9WC-06 5 35957396 35957396 G A UGT3A1 Silent p.L323L 0.14 TCGA-3N-A9WC-06 5 36686171 36686171 C T SLC1A3 Missense_Mutation p.R477C 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 5 37044830 37044830 T C NIPBL Silent p.Y2114Y 0.16 TCGA-3N-A9WC-06 5 37727022 37727022 C T WDR70 Silent p.L584L 0.21 TCGA-3N-A9WC-06 5 38482239 38482239 G A LIFR Missense_Mutation p.P918S 0.30 tolerated(0.36) benign(0.069) TCGA-3N-A9WC-06 5 38482287 38482287 G A LIFR Missense_Mutation p.P902S 0.43 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 5 38885586 38885586 C T OSMR Missense_Mutation p.S280L 0.27 tolerated(0.16) possibly_damaging(0.656) TCGA-3N-A9WC-06 5 38923350 38923350 G A OSMR Missense_Mutation p.E622K 0.34 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 5 40937666 40937666 C T C7 Silent p.L147L 0.24 TCGA-3N-A9WC-06 5 40959582 40959582 C T C7 Silent p.S507S 0.31 TCGA-3N-A9WC-06 5 40999813 40999813 C T MROH2B Nonsense_Mutation p.W1517* 0.33 TCGA-3N-A9WC-06 5 40999814 40999814 C T MROH2B Nonsense_Mutation p.W1517* 0.29 TCGA-3N-A9WC-06 5 41061769 41061769 G A MROH2B Missense_Mutation p.P173L 0.30 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 5 41161857 41161857 C T C6 Missense_Mutation p.E466K 0.24 tolerated(0.38) benign(0.038) TCGA-3N-A9WC-06 5 43539082 43539082 G A PAIP1 Nonsense_Mutation p.R264* 0.26 TCGA-3N-A9WC-06 5 55168173 55168173 C T IL31RA Silent p.F116F 0.25 TCGA-3N-A9WC-06 5 55209367 55209367 C T IL31RA Silent p.L569L 0.34 TCGA-3N-A9WC-06 5 60067831 60067831 C T ELOVL7 Missense_Mutation p.G52R 0.33 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WC-06 5 66429396 66429396 G A MAST4 Silent p.K716K 0.38 TCGA-3N-A9WC-06 5 71490634 71490634 C T MAP1B Silent p.I484I 0.42 TCGA-3N-A9WC-06 5 75973070 75973070 C T IQGAP2 Silent p.V1185V 0.43 TCGA-3N-A9WC-06 5 79026021 79026021 C T CMYA5 Missense_Mutation p.P478L 0.15 benign(0) TCGA-3N-A9WC-06 5 79027299 79027299 C T CMYA5 Missense_Mutation p.S904L 0.19 possibly_damaging(0.587) TCGA-3N-A9WC-06 5 79030700 79030700 G A CMYA5 Missense_Mutation p.E2038K 0.24 probably_damaging(0.956) TCGA-3N-A9WC-06 5 79366879 79366879 G A THBS4 Silent p.R532R 0.17 TCGA-3N-A9WC-06 5 79950372 79950372 G A DHFR 5'UTR 0.24 TCGA-3N-A9WC-06 5 82815945 82815945 C T VCAN Missense_Mutation p.S607F 0.40 deleterious(0.04) benign(0.219) TCGA-3N-A9WC-06 5 82832831 82832831 A T VCAN Missense_Mutation p.M1337L 0.30 tolerated(0.22) benign(0.09) TCGA-3N-A9WC-06 5 89954000 89954000 C T GPR98 Missense_Mutation p.R1553C 0.38 benign(0.001) TCGA-3N-A9WC-06 5 90678773 90678773 G A ARRDC3 Missense_Mutation p.S46F 0.21 deleterious(0) possibly_damaging(0.905) TCGA-3N-A9WC-06 5 95728809 95728809 G A PCSK1 Silent p.L720L 0.25 TCGA-3N-A9WC-06 5 95728969 95728969 G A PCSK1 Silent p.A666A 0.19 TCGA-3N-A9WC-06 5 95730595 95730595 C T PCSK1 Silent p.G619G 0.42 TCGA-3N-A9WC-06 5 95746664 95746664 G A PCSK1 Silent p.F303F 0.18 TCGA-3N-A9WC-06 6 109871433 109871433 C T AK9 Missense_Mutation p.E942K 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 6 117248308 117248308 G A RFX6 Silent p.V668V 0.43 TCGA-3N-A9WC-06 6 12124011 12124011 C T HIVEP1 Missense_Mutation p.S1328F 0.21 tolerated(0.06) probably_damaging(0.937) TCGA-3N-A9WC-06 6 126080350 126080350 C T HEY2 Missense_Mutation p.S139F 0.27 deleterious(0.04) possibly_damaging(0.895) TCGA-3N-A9WC-06 6 126080351 126080351 C T HEY2 Silent p.S139S 0.27 TCGA-3N-A9WC-06 6 127768829 127768829 C T KIAA0408 Missense_Mutation p.G212E 0.21 tolerated(0.91) benign(0.3) TCGA-3N-A9WC-06 6 127797076 127797076 C T SOGA3 Missense_Mutation p.E699K 0.43 tolerated(0.08) possibly_damaging(0.49) TCGA-3N-A9WC-06 6 127912813 127912813 G A C6orf58 3'UTR 0.48 TCGA-3N-A9WC-06 6 130166920 130166920 C T TMEM244 Silent p.V37V 0.23 TCGA-3N-A9WC-06 6 130505633 130505633 C T SAMD3 Silent p.R173R 0.30 TCGA-3N-A9WC-06 6 133014181 133014181 G A VNN1 Missense_Mutation p.P270S 0.34 tolerated(0.29) benign(0.282) TCGA-3N-A9WC-06 6 133046004 133046004 T A VNN3 3'UTR 0.27 TCGA-3N-A9WC-06 6 13365862 13365862 C T GFOD1 Missense_Mutation p.A96T 0.29 deleterious(0.01) possibly_damaging(0.794) TCGA-3N-A9WC-06 6 136582501 136582501 A G BCLAF1 Missense_Mutation p.W887R 0.20 deleterious(0) possibly_damaging(0.781) TCGA-3N-A9WC-06 6 136596757 136596757 A C BCLAF1 Missense_Mutation p.F589V 0.12 deleterious(0) possibly_damaging(0.504) TCGA-3N-A9WC-06 6 139094820 139094820 G A CCDC28A Silent p.R3R 0.50 TCGA-3N-A9WC-06 6 13977543 13977543 C T RNF182 Missense_Mutation p.P65S 0.20 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 6 146755666 146755666 C T GRM1 Nonsense_Mutation p.Q1107* 0.37 TCGA-3N-A9WC-06 6 150240350 150240350 C T RAET1G Missense_Mutation p.E154K 0.42 tolerated(0.24) probably_damaging(0.995) TCGA-3N-A9WC-06 6 150322259 150322259 G A RAET1K RNA 0.38 TCGA-3N-A9WC-06 6 152832714 152832714 C T SYNE1 Intron 0.38 TCGA-3N-A9WC-06 6 154411067 154411067 G A OPRM1 Missense_Mutation p.G226R 0.29 tolerated(0.47) possibly_damaging(0.817) TCGA-3N-A9WC-06 6 158923653 158923653 C T TULP4 Silent p.T986T 0.33 TCGA-3N-A9WC-06 6 159653040 159653040 G A FNDC1 Missense_Mutation p.G499E 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-3N-A9WC-06 6 159653041 159653041 G A FNDC1 Silent p.G499G 0.30 TCGA-3N-A9WC-06 6 159670168 159670168 C T FNDC1 Silent p.S1596S 0.31 TCGA-3N-A9WC-06 6 159682250 159682250 C T FNDC1 Missense_Mutation p.P1735S 0.28 deleterious(0) possibly_damaging(0.681) TCGA-3N-A9WC-06 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.35 TCGA-3N-A9WC-06 6 160225651 160225651 G A PNLDC1 Missense_Mutation p.G137E 0.46 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WC-06 6 161010671 161010671 G A LPA Silent p.S1287S 0.36 TCGA-3N-A9WC-06 6 163235239 163235239 C T PACRG Nonsense_Mutation p.R73* 0.40 TCGA-3N-A9WC-06 6 24447153 24447153 G A GPLD1 Missense_Mutation p.S578F 0.09 deleterious(0) benign(0.245) TCGA-3N-A9WC-06 6 24583846 24583846 G A KIAA0319 Missense_Mutation p.P360L 0.19 deleterious(0) possibly_damaging(0.757) TCGA-3N-A9WC-06 6 24596224 24596224 G A KIAA0319 Silent p.A226A 0.20 TCGA-3N-A9WC-06 6 25726495 25726495 C T HIST1H2AA Silent p.A87A 0.20 TCGA-3N-A9WC-06 6 26388351 26388351 C T BTN2A2 Missense_Mutation p.P185S 0.20 tolerated(0.22) possibly_damaging(0.791) TCGA-3N-A9WC-06 6 26460001 26460001 T G BTN2A1 Missense_Mutation p.C125W 0.28 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 6 26505364 26505364 G A BTN1A1 Silent p.A213A 0.16 TCGA-3N-A9WC-06 6 26509002 26509002 G A BTN1A1 Nonsense_Mutation p.W394* 0.26 TCGA-3N-A9WC-06 6 2685567 2685567 A T MYLK4 Missense_Mutation p.F170I 0.20 tolerated(0.14) possibly_damaging(0.838) TCGA-3N-A9WC-06 6 2685568 2685568 G A MYLK4 Silent p.A169A 0.20 TCGA-3N-A9WC-06 6 27419538 27419538 G A ZNF184 Silent p.H600H 0.19 TCGA-3N-A9WC-06 6 28200900 28200900 C T ZSCAN9 Nonsense_Mutation p.R428* 0.43 TCGA-3N-A9WC-06 6 28200985 28200985 C T ZSCAN9 3'UTR 0.11 TCGA-3N-A9WC-06 6 28543087 28543087 C T SCAND3 Silent p.Q465Q 0.25 TCGA-3N-A9WC-06 6 28543726 28543726 C T SCAND3 Silent p.L252L 0.17 TCGA-3N-A9WC-06 6 29141771 29141771 C T OR2J2 Missense_Mutation p.S120L 0.19 deleterious(0) possibly_damaging(0.786) TCGA-3N-A9WC-06 6 29323052 29323052 C T OR5V1 Silent p.K307K 0.22 TCGA-3N-A9WC-06 6 29323851 29323851 C T OR5V1 Missense_Mutation p.G41E 0.23 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 6 29408620 29408620 C T OR10C1 Silent p.F276F 0.23 TCGA-3N-A9WC-06 6 29430458 29430458 G A OR2H1 Silent p.G304G 0.16 TCGA-3N-A9WC-06 6 29455244 29455244 G A MAS1L Missense_Mutation p.P146S 0.14 tolerated(0.29) benign(0.005) TCGA-3N-A9WC-06 6 29523835 29523835 C T UBD Missense_Mutation p.R107Q 0.49 tolerated(0.06) benign(0.316) TCGA-3N-A9WC-06 6 29796016 29796016 G A HLA-G Missense_Mutation p.R89Q 0.24 tolerated_low_confidence(0.38) benign(0.031) TCGA-3N-A9WC-06 6 30572238 30572238 C A PPP1R10 Missense_Mutation p.D385Y 0.44 deleterious(0) possibly_damaging(0.808) TCGA-3N-A9WC-06 6 3078166 3078166 C T RIPK1 Silent p.A106A 0.29 TCGA-3N-A9WC-06 6 30865943 30865943 G A DDR1 Silent p.R776R 0.13 TCGA-3N-A9WC-06 6 31431774 31431774 C T HCP5 RNA 0.16 TCGA-3N-A9WC-06 6 31600718 31600718 C T PRRC2A Missense_Mutation p.T1423I 0.17 unknown(0) TCGA-3N-A9WC-06 6 31600719 31600719 C T PRRC2A Silent p.T1423T 0.17 TCGA-3N-A9WC-06 6 31753059 31753059 G A VARS Silent p.S437S 0.28 TCGA-3N-A9WC-06 6 31827819 31827819 G A NEU1 Nonsense_Mutation p.R341* 0.18 TCGA-3N-A9WC-06 6 31901400 31901400 C T CFB Silent p.P90P 0.24 TCGA-3N-A9WC-06 6 31926938 31926938 C T SKIV2L 5'UTR 0.48 TCGA-3N-A9WC-06 6 32014198 32014198 C T TNXB 5'Flank 0.16 TCGA-3N-A9WC-06 6 32036275 32036275 C T TNXB Missense_Mutation p.E2038K 0.14 benign(0.046) TCGA-3N-A9WC-06 6 32036276 32036276 C G TNXB Missense_Mutation p.E2037D 0.14 possibly_damaging(0.45) TCGA-3N-A9WC-06 6 32064226 32064226 C T TNXB Silent p.G468G 0.21 TCGA-3N-A9WC-06 6 32185011 32185011 C T NOTCH4 Missense_Mutation p.D553N 0.50 tolerated(1) benign(0.078) TCGA-3N-A9WC-06 6 32187488 32187488 G A NOTCH4 Missense_Mutation p.P464L 0.14 tolerated(0.16) benign(0.053) TCGA-3N-A9WC-06 6 32260961 32260961 C T C6orf10 Missense_Mutation p.G497R 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-3N-A9WC-06 6 32362529 32362529 G A BTNL2 Missense_Mutation p.S451F 0.30 tolerated(0.82) benign(0.004) TCGA-3N-A9WC-06 6 32609184 32609184 G A HLA-DQA1 Silent p.V60V 0.42 TCGA-3N-A9WC-06 6 33218659 33218659 G A VPS52 Missense_Mutation p.H711Y 0.21 tolerated(0.1) possibly_damaging(0.733) TCGA-3N-A9WC-06 6 33694681 33694681 G A IP6K3 Missense_Mutation p.P139L 0.24 tolerated(0.2) benign(0.107) TCGA-3N-A9WC-06 6 33694682 33694682 G A IP6K3 Missense_Mutation p.P139S 0.23 tolerated(0.28) benign(0.01) TCGA-3N-A9WC-06 6 33744973 33744973 C T LEMD2 Silent p.R400R 0.17 TCGA-3N-A9WC-06 6 34507136 34507136 C T SPDEF Silent p.V240V 0.46 TCGA-3N-A9WC-06 6 36724072 36724072 C T CPNE5 Missense_Mutation p.V287I 0.45 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 6 38548109 38548109 G A BTBD9 Missense_Mutation p.H307Y 0.31 deleterious(0.01) unknown(0) TCGA-3N-A9WC-06 6 38950121 38950121 G C DNAH8 Splice_Site p.X4062_splice 0.21 TCGA-3N-A9WC-06 6 39163694 39163694 G A KCNK5 Missense_Mutation p.P86S 0.18 tolerated(0.23) probably_damaging(0.95) TCGA-3N-A9WC-06 6 39267433 39267433 C T KCNK17 Missense_Mutation p.A257T 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 6 39290167 39290167 C T KCNK16 Silent p.E50E 0.16 TCGA-3N-A9WC-06 6 4069641 4069641 C T FAM217A Nonsense_Mutation p.W272* 0.15 TCGA-3N-A9WC-06 6 41197288 41197288 C T TREML4 Missense_Mutation p.P142S 0.31 tolerated(0.52) benign(0.02) TCGA-3N-A9WC-06 6 41874720 41874720 G A MED20 3'UTR 0.25 TCGA-3N-A9WC-06 6 41884554 41884554 G A MED20 Silent p.Y46Y 0.14 TCGA-3N-A9WC-06 6 42044927 42044927 C T TAF8 Silent p.I290I 0.32 TCGA-3N-A9WC-06 6 42146546 42146546 C T GUCA1A Missense_Mutation p.R120C 0.16 deleterious(0) probably_damaging(0.964) TCGA-3N-A9WC-06 6 42227454 42227454 G A TRERF1 Missense_Mutation p.P631L 0.15 deleterious(0.04) possibly_damaging(0.713) TCGA-3N-A9WC-06 6 42235978 42235978 G A TRERF1 Missense_Mutation p.R451C 0.17 deleterious_low_confidence(0) benign(0.013) TCGA-3N-A9WC-06 6 42237368 42237368 T A TRERF1 5'UTR 0.24 TCGA-3N-A9WC-06 6 43023310 43023310 G A MRPL2 Silent p.I226I 0.20 TCGA-3N-A9WC-06 6 43100323 43100323 C T PTK7 Silent p.L384L 0.56 TCGA-3N-A9WC-06 6 43222790 43222790 C T TTBK1 Missense_Mutation p.R194W 0.31 probably_damaging(0.998) TCGA-3N-A9WC-06 6 43322968 43322968 G A ZNF318 Missense_Mutation p.P702S 0.10 benign(0.042) TCGA-3N-A9WC-06 6 43406458 43406458 C T ABCC10 Silent p.I684I 0.17 TCGA-3N-A9WC-06 6 43414178 43414178 A G ABCC10 Missense_Mutation p.N1180D 0.22 tolerated(1) benign(0.009) TCGA-3N-A9WC-06 6 43420784 43420784 C T DLK2 Missense_Mutation p.C77Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 6 43501643 43501643 C T XPO5 Splice_Site p.X815_splice 0.12 TCGA-3N-A9WC-06 6 43748479 43748479 C T VEGFA Nonsense_Mutation p.R325* 0.20 TCGA-3N-A9WC-06 6 43970422 43970422 C T C6orf223 Silent p.H96H 0.75 TCGA-3N-A9WC-06 6 44273508 44273508 G A AARS2 Missense_Mutation p.S439F 0.20 deleterious(0.02) probably_damaging(0.973) TCGA-3N-A9WC-06 6 46191022 46191022 G A RCAN2 Silent p.L196L 0.18 TCGA-3N-A9WC-06 6 46626734 46626734 C T SLC25A27 Missense_Mutation p.L112F 0.16 tolerated(0.15) benign(0.031) TCGA-3N-A9WC-06 6 46826169 46826169 C T GPR116 Silent p.T1157T 0.13 TCGA-3N-A9WC-06 6 46874425 46874425 C T GPR116 Nonsense_Mutation p.W25* 0.23 TCGA-3N-A9WC-06 6 47682098 47682098 G A GPR115 Missense_Mutation p.E373K 0.27 tolerated(0.85) benign(0.002) TCGA-3N-A9WC-06 6 47976704 47976704 C T PTCHD4 Silent p.G191G 0.23 TCGA-3N-A9WC-06 6 49582567 49582567 C T RHAG Splice_Site p.X214_splice 0.28 TCGA-3N-A9WC-06 6 49604442 49604442 C T RHAG Silent p.T28T 0.25 TCGA-3N-A9WC-06 6 50740495 50740495 G A TFAP2D Missense_Mutation p.G426E 0.23 tolerated(0.17) benign(0.047) TCGA-3N-A9WC-06 6 52052459 52052459 G A IL17A Missense_Mutation p.R29Q 0.19 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 6 52101644 52101644 T A IL17F 3'UTR 0.21 TCGA-3N-A9WC-06 6 55223779 55223779 G A GFRAL Silent p.Q265Q 0.21 TCGA-3N-A9WC-06 6 55263977 55263977 G A GFRAL Splice_Site p.X318_splice 0.33 TCGA-3N-A9WC-06 6 55266659 55266659 G A GFRAL 3'UTR 0.33 TCGA-3N-A9WC-06 6 55659137 55659137 G A BMP5 Missense_Mutation p.H258Y 0.25 tolerated(0.99) benign(0.076) TCGA-3N-A9WC-06 6 55929410 55929410 C T COL21A1 Missense_Mutation p.G713E 0.33 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 6 57467196 57467196 G A PRIM2 3'UTR 0.14 TCGA-3N-A9WC-06 6 63990398 63990398 G A LGSN Missense_Mutation p.A353V 0.44 deleterious(0.01) possibly_damaging(0.77) TCGA-3N-A9WC-06 6 63995592 63995592 C T LGSN Missense_Mutation p.R77K 0.37 tolerated(1) benign(0) TCGA-3N-A9WC-06 6 69348818 69348818 C T BAI3 Missense_Mutation p.S84L 0.44 tolerated(0.14) probably_damaging(0.916) TCGA-3N-A9WC-06 6 70048831 70048831 G A BAI3 Missense_Mutation p.G1071D 0.36 tolerated(0.15) probably_damaging(0.999) TCGA-3N-A9WC-06 6 70070982 70070982 G A BAI3 Missense_Mutation p.E1273K 0.33 tolerated(0.85) benign(0.001) TCGA-3N-A9WC-06 6 70071287 70071287 G A BAI3 Silent p.Q1374Q 0.43 TCGA-3N-A9WC-06 6 70890241 70890241 G A COL19A1 Missense_Mutation p.G902E 0.33 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 6 73751689 73751689 G A KCNQ5 Missense_Mutation p.E174K 0.37 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 6 7580344 7580344 C T DSP Silent p.A1307A 0.23 TCGA-3N-A9WC-06 6 76751689 76751689 G A IMPG1 Silent p.F74F 0.34 TCGA-3N-A9WC-06 6 78172243 78172243 C T HTR1B Missense_Mutation p.R293Q 0.36 tolerated(0.06) benign(0.073) TCGA-3N-A9WC-06 6 7861829 7861829 G A BMP6 Missense_Mutation p.D335N 0.14 deleterious(0.03) possibly_damaging(0.725) TCGA-3N-A9WC-06 6 84233389 84233389 G T PRSS35 Nonsense_Mutation p.E77* 0.23 TCGA-3N-A9WC-06 6 87725478 87725478 G A HTR1E Missense_Mutation p.M142I 0.52 deleterious(0.01) probably_damaging(0.945) TCGA-3N-A9WC-06 6 87797882 87797882 C T CGA Missense_Mutation p.V13I 0.36 tolerated(0.49) benign(0.002) TCGA-3N-A9WC-06 6 96651244 96651244 G A FUT9 Nonsense_Mutation p.W71* 0.47 TCGA-3N-A9WC-06 6 97246798 97246798 C T GPR63 Silent p.R270R 0.26 TCGA-3N-A9WC-06 6 97562169 97562169 G A KLHL32 Missense_Mutation p.E380K 0.47 tolerated(0.17) possibly_damaging(0.814) TCGA-3N-A9WC-06 7 100086940 100086940 C A NYAP1 Silent p.A532A 0.36 TCGA-3N-A9WC-06 7 100205401 100205401 C T PCOLCE Missense_Mutation p.P385L 0.23 tolerated(0.42) benign(0.129) TCGA-3N-A9WC-06 7 100395336 100395336 T G ZAN Silent p.V2715V 0.30 TCGA-3N-A9WC-06 7 100552591 100552591 C T MUC3A Missense_Mutation p.P448S 0.11 deleterious(0.03) probably_damaging(0.911) TCGA-3N-A9WC-06 7 100552683 100552683 C T MUC3A Silent p.A478A 0.18 TCGA-3N-A9WC-06 7 100675592 100675592 C T MUC17 Missense_Mutation p.P299S 0.24 benign(0.013) TCGA-3N-A9WC-06 7 100777121 100777121 C T SERPINE1 Silent p.I282I 0.18 TCGA-3N-A9WC-06 7 100818047 100818047 G A NAT16 Silent p.V14V 0.26 TCGA-3N-A9WC-06 7 100841495 100841495 G A MOGAT3 Silent p.F215F 0.31 TCGA-3N-A9WC-06 7 103294550 103294550 G A RELN Missense_Mutation p.S515F 0.16 deleterious(0.01) possibly_damaging(0.506) TCGA-3N-A9WC-06 7 105108813 105108813 G A PUS7 Missense_Mutation p.P499L 0.23 tolerated(0.21) possibly_damaging(0.789) TCGA-3N-A9WC-06 7 105108814 105108814 G A PUS7 Missense_Mutation p.P499S 0.23 tolerated(0.05) possibly_damaging(0.864) TCGA-3N-A9WC-06 7 107399133 107399133 C T CBLL1 Missense_Mutation p.S329L 0.31 tolerated(0.17) benign(0.009) TCGA-3N-A9WC-06 7 107708469 107708469 C T LAMB4 Missense_Mutation p.G813D 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 111503510 111503510 G A DOCK4 Silent p.I797I 0.25 TCGA-3N-A9WC-06 7 113518229 113518229 G A PPP1R3A Missense_Mutation p.P973L 0.28 tolerated(0.15) benign(0.01) TCGA-3N-A9WC-06 7 113518701 113518701 C T PPP1R3A Missense_Mutation p.E816K 0.31 deleterious(0.04) benign(0.32) TCGA-3N-A9WC-06 7 113519973 113519973 C T PPP1R3A Missense_Mutation p.E392K 0.24 tolerated(0.54) benign(0.006) TCGA-3N-A9WC-06 7 11452402 11452402 T A THSD7A Missense_Mutation p.Q1188L 0.37 tolerated(0.39) benign(0.232) TCGA-3N-A9WC-06 7 116339464 116339464 G A MET Missense_Mutation p.G109E 0.25 tolerated(0.15) benign(0.279) TCGA-3N-A9WC-06 7 116339660 116339660 C T MET Silent p.D174D 0.26 TCGA-3N-A9WC-06 7 116955129 116955129 C T WNT2 Missense_Mutation p.R195K 0.23 deleterious(0) possibly_damaging(0.859) TCGA-3N-A9WC-06 7 117020073 117020073 T A ASZ1 Missense_Mutation p.K325I 0.28 deleterious(0.02) benign(0.405) TCGA-3N-A9WC-06 7 117282622 117282622 G A CFTR Missense_Mutation p.R1283K 0.29 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 119915580 119915580 C T KCND2 Silent p.F298F 0.38 TCGA-3N-A9WC-06 7 119915732 119915732 C T KCND2 Missense_Mutation p.S349F 0.29 tolerated(0.68) possibly_damaging(0.835) TCGA-3N-A9WC-06 7 120767242 120767242 C T CPED1 Silent p.F411F 0.25 TCGA-3N-A9WC-06 7 120907270 120907270 G A CPED1 Missense_Mutation p.E879K 0.23 deleterious(0.01) benign(0.103) TCGA-3N-A9WC-06 7 121674158 121674158 G A PTPRZ1 Missense_Mutation p.E1726K 0.28 tolerated(0.06) possibly_damaging(0.512) TCGA-3N-A9WC-06 7 122342172 122342172 C T RNF148 Nonsense_Mutation p.W211* 0.20 TCGA-3N-A9WC-06 7 122342761 122342761 G A RNF148 Missense_Mutation p.S15L 0.27 deleterious(0.01) benign(0.002) TCGA-3N-A9WC-06 7 122757553 122757553 G A SLC13A1 Missense_Mutation p.S541L 0.22 deleterious(0) probably_damaging(0.964) TCGA-3N-A9WC-06 7 123109418 123109418 C T IQUB Nonsense_Mutation p.W477* 0.30 TCGA-3N-A9WC-06 7 123109419 123109419 C T IQUB Nonsense_Mutation p.W477* 0.29 TCGA-3N-A9WC-06 7 123152348 123152348 G A IQUB Missense_Mutation p.S16L 0.39 tolerated_low_confidence(0.11) benign(0.002) TCGA-3N-A9WC-06 7 123599708 123599708 T C SPAM1 Silent p.F405F 0.27 TCGA-3N-A9WC-06 7 126883051 126883051 C T GRM8 Missense_Mutation p.E70K 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-3N-A9WC-06 7 127014344 127014344 G A ZNF800 Missense_Mutation p.S349F 0.37 tolerated(0.17) probably_damaging(0.965) TCGA-3N-A9WC-06 7 127238572 127238572 C T FSCN3 Silent p.I348I 0.33 TCGA-3N-A9WC-06 7 127238641 127238641 C T FSCN3 Silent p.I371I 0.15 TCGA-3N-A9WC-06 7 128033006 128033006 C T IMPDH1 3'UTR 0.30 TCGA-3N-A9WC-06 7 128585935 128585935 G C IRF5 Missense_Mutation p.V78L 0.17 tolerated(0.05) possibly_damaging(0.462) TCGA-3N-A9WC-06 7 129810269 129810269 G A TMEM209 Silent p.I534I 0.26 TCGA-3N-A9WC-06 7 130025085 130025085 C T CPA1 Missense_Mutation p.H296Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 7 131817940 131817940 C T PLXNA4 Silent p.G1819G 0.28 TCGA-3N-A9WC-06 7 135078680 135078680 G A CNOT4 Silent p.I539I 0.26 TCGA-3N-A9WC-06 7 135261718 135261718 C T NUP205 Missense_Mutation p.P164S 0.19 tolerated(0.41) benign(0.07) TCGA-3N-A9WC-06 7 135376353 135376353 C T SLC13A4 Missense_Mutation p.G421S 0.26 tolerated(0.28) probably_damaging(0.993) TCGA-3N-A9WC-06 7 135378904 135378904 C T SLC13A4 Missense_Mutation p.E367K 0.15 tolerated(1) benign(0.042) TCGA-3N-A9WC-06 7 137363398 137363398 C T DGKI Missense_Mutation p.E171K 0.33 deleterious(0.01) possibly_damaging(0.687) TCGA-3N-A9WC-06 7 138601801 138601801 G A KIAA1549 Silent p.F857F 0.14 TCGA-3N-A9WC-06 7 138749640 138749640 C T ZC3HAV1 Missense_Mutation p.E660K 0.22 deleterious(0) benign(0.101) TCGA-3N-A9WC-06 7 139311383 139311383 G A HIPK2 Missense_Mutation p.T528I 0.32 deleterious(0) benign(0.369) TCGA-3N-A9WC-06 7 139724611 139724611 G A PARP12 Silent p.L619L 0.20 TCGA-3N-A9WC-06 7 139724612 139724612 G A PARP12 Silent p.F618F 0.19 TCGA-3N-A9WC-06 7 140301306 140301306 G A DENND2A Missense_Mutation p.P298S 0.29 deleterious(0.04) possibly_damaging(0.792) TCGA-3N-A9WC-06 7 140454008 140454008 G A BRAF Missense_Mutation p.H574Y 0.37 deleterious(0) probably_damaging(0.984) TCGA-3N-A9WC-06 7 141708471 141708471 G A MGAM Missense_Mutation p.R98Q 0.27 deleterious(0.01) probably_damaging(0.919) TCGA-3N-A9WC-06 7 141759656 141759656 G A MGAM Missense_Mutation p.D1317N 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-3N-A9WC-06 7 141795418 141795418 C T MGAM Silent p.V1608V 0.28 TCGA-3N-A9WC-06 7 142028477 142028477 G A TRBV6-1 Missense_Mutation p.E71K 0.30 tolerated(0.33) benign(0.002) TCGA-3N-A9WC-06 7 142176455 142176455 C T TRBV7-4 Missense_Mutation p.R74Q 0.31 tolerated(0.34) benign(0.001) TCGA-3N-A9WC-06 7 142180911 142180911 G A TRBV6-5 Silent p.L14L 0.28 TCGA-3N-A9WC-06 7 142458544 142458544 C T PRSS1 Missense_Mutation p.S60L 0.23 deleterious(0) possibly_damaging(0.763) TCGA-3N-A9WC-06 7 143053749 143053749 G A FAM131B Missense_Mutation p.P326L 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-3N-A9WC-06 7 143140845 143140845 G A TAS2R60 Nonsense_Mutation p.W100* 0.25 TCGA-3N-A9WC-06 7 143573191 143573191 G A FAM115A Missense_Mutation p.P171S 0.33 deleterious(0.02) probably_damaging(0.962) TCGA-3N-A9WC-06 7 143771325 143771325 C T OR2A25 Nonsense_Mutation p.Q5* 0.26 TCGA-3N-A9WC-06 7 14613847 14613847 G A DGKB Missense_Mutation p.S588F 0.20 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 7 146805303 146805303 G A CNTNAP2 Missense_Mutation p.M205I 0.17 tolerated(0.16) benign(0.009) TCGA-3N-A9WC-06 7 14733754 14733754 C T DGKB Nonsense_Mutation p.W219* 0.29 TCGA-3N-A9WC-06 7 148768201 148768201 G A ZNF786 Missense_Mutation p.H555Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 7 150325422 150325422 C T GIMAP6 Silent p.G88G 0.30 TCGA-3N-A9WC-06 7 150390323 150390323 C T GIMAP2 Missense_Mutation p.P317S 0.14 tolerated_low_confidence(0.14) benign(0.026) TCGA-3N-A9WC-06 7 150749079 150749079 G A ASIC3 Missense_Mutation p.G439E 0.20 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 151372654 151372654 G A PRKAG2 Missense_Mutation p.S179F 0.21 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-3N-A9WC-06 7 1518105 1518105 G A INTS1 Silent p.A1509A 0.31 TCGA-3N-A9WC-06 7 151896472 151896472 C T KMT2C Missense_Mutation p.D1389N 0.07 possibly_damaging(0.694) TCGA-3N-A9WC-06 7 151896475 151896475 C T KMT2C Missense_Mutation p.E1388K 0.07 possibly_damaging(0.653) TCGA-3N-A9WC-06 7 151896544 151896544 C T KMT2C Missense_Mutation p.E1365K 0.14 possibly_damaging(0.493) TCGA-3N-A9WC-06 7 151896545 151896545 C T KMT2C Splice_Site p.X1365_splice 0.14 TCGA-3N-A9WC-06 7 15458277 15458277 A T AGMO Missense_Mutation p.I172N 0.36 deleterious(0) possibly_damaging(0.797) TCGA-3N-A9WC-06 7 156476707 156476707 G A LMBR1 3'UTR 0.44 TCGA-3N-A9WC-06 7 18066487 18066487 C T PRPS1L1 Missense_Mutation p.E307K 0.39 deleterious(0.02) benign(0.07) TCGA-3N-A9WC-06 7 18067039 18067039 G A PRPS1L1 Missense_Mutation p.H123Y 0.38 deleterious(0.01) benign(0.18) TCGA-3N-A9WC-06 7 18914132 18914132 G A HDAC9 Missense_Mutation p.D906N 0.54 deleterious(0.02) benign(0.004) TCGA-3N-A9WC-06 7 19184658 19184658 C T FERD3L Missense_Mutation p.E110K 0.38 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 20199692 20199692 C T MACC1 Missense_Mutation p.E98K 0.37 tolerated(0.28) probably_damaging(0.996) TCGA-3N-A9WC-06 7 20784904 20784904 C T ABCB5 Missense_Mutation p.S1091F 0.41 deleterious(0) probably_damaging(0.97) TCGA-3N-A9WC-06 7 23775230 23775230 G A STK31 Missense_Mutation p.G186E 0.38 deleterious(0) possibly_damaging(0.78) TCGA-3N-A9WC-06 7 24738641 24738641 G A DFNA5 3'UTR 0.32 TCGA-3N-A9WC-06 7 2969687 2969687 C T CARD11 Missense_Mutation p.G531D 0.47 tolerated(0.46) benign(0.001) TCGA-3N-A9WC-06 7 2969688 2969688 C T CARD11 Missense_Mutation p.G531S 0.47 tolerated(0.62) benign(0.001) TCGA-3N-A9WC-06 7 30491385 30491385 G A NOD1 Missense_Mutation p.P550S 0.36 tolerated(0.63) benign(0.002) TCGA-3N-A9WC-06 7 30491386 30491386 G A NOD1 Silent p.P549P 0.38 TCGA-3N-A9WC-06 7 30491967 30491967 G A NOD1 Missense_Mutation p.H356Y 0.42 tolerated(0.05) possibly_damaging(0.806) TCGA-3N-A9WC-06 7 30491968 30491968 G A NOD1 Silent p.S355S 0.43 TCGA-3N-A9WC-06 7 30795174 30795174 G A INMT Missense_Mutation p.E167K 0.21 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.24 tolerated(0.19) benign(0.198) TCGA-3N-A9WC-06 7 31746868 31746868 G A PPP1R17 Missense_Mutation p.E147K 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-3N-A9WC-06 7 38765835 38765835 G A VPS41 3'UTR 0.39 TCGA-3N-A9WC-06 7 39247022 39247022 C T POU6F2 Missense_Mutation p.A105V 0.39 tolerated(0.74) probably_damaging(0.97) TCGA-3N-A9WC-06 7 39446212 39446212 C T POU6F2 Missense_Mutation p.P300L 0.16 tolerated_low_confidence(0.12) unknown(0) TCGA-3N-A9WC-06 7 4213935 4213935 G A SDK1 Missense_Mutation p.G1628S 0.25 tolerated(0.27) benign(0.009) TCGA-3N-A9WC-06 7 4247761 4247761 G A SDK1 Missense_Mutation p.E1749K 0.44 tolerated(0.27) benign(0.082) TCGA-3N-A9WC-06 7 4308196 4308196 C T SDK1 3'UTR 0.22 TCGA-3N-A9WC-06 7 43482218 43482218 C T HECW1 Silent p.S345S 0.33 TCGA-3N-A9WC-06 7 43503276 43503276 G A HECW1 Missense_Mutation p.R890Q 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WC-06 7 45750221 45750221 G A ADCY1 Missense_Mutation p.M1009I 0.17 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 7 45931639 45931639 G A IGFBP1 Missense_Mutation p.G210R 0.46 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 47814612 47814612 G A PKD1L1 3'UTR 0.20 TCGA-3N-A9WC-06 7 48352795 48352795 C T ABCA13 Silent p.I3216I 0.44 TCGA-3N-A9WC-06 7 53103810 53103810 G A POM121L12 Missense_Mutation p.S149N 0.52 tolerated(0.22) possibly_damaging(0.682) TCGA-3N-A9WC-06 7 5355628 5355628 A T TNRC18 Missense_Mutation p.L2274H 0.28 possibly_damaging(0.869) TCGA-3N-A9WC-06 7 5355629 5355629 G A TNRC18 Missense_Mutation p.L2274F 0.28 possibly_damaging(0.587) TCGA-3N-A9WC-06 7 6210585 6210585 G A CYTH3 Missense_Mutation p.A196V 0.24 deleterious(0) benign(0.121) TCGA-3N-A9WC-06 7 63720599 63720599 G A ZNF679 Missense_Mutation p.G14R 0.20 tolerated(0.05) benign(0.018) TCGA-3N-A9WC-06 7 6826521 6826521 G A RSPH10B2 Missense_Mutation p.E627K 0.11 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 7 71130533 71130533 G A WBSCR17 Missense_Mutation p.M406I 0.20 deleterious(0.01) possibly_damaging(0.775) TCGA-3N-A9WC-06 7 71134991 71134991 G A WBSCR17 Missense_Mutation p.R434K 0.20 deleterious(0.03) possibly_damaging(0.899) TCGA-3N-A9WC-06 7 72413752 72413752 G A POM121 Missense_Mutation p.G809R 0.20 tolerated(0.1) probably_damaging(0.969) TCGA-3N-A9WC-06 7 73010036 73010036 A G MLXIPL Silent p.F747F 0.50 TCGA-3N-A9WC-06 7 73254389 73254389 C T WBSCR27 Silent p.A150A 0.23 TCGA-3N-A9WC-06 7 73275537 73275537 C T WBSCR28 Missense_Mutation p.P5S 0.33 deleterious(0.03) probably_damaging(0.932) TCGA-3N-A9WC-06 7 73510994 73510994 G A LIMK1 Silent p.E65E 0.15 TCGA-3N-A9WC-06 7 73818328 73818328 C T CLIP2 3'UTR 0.25 TCGA-3N-A9WC-06 7 7457519 7457519 G A COL28A1 Missense_Mutation p.P703S 0.58 deleterious(0.05) benign(0.021) TCGA-3N-A9WC-06 7 76982942 76982942 G A GSAP Missense_Mutation p.S452F 0.32 tolerated(0.51) benign(0.032) TCGA-3N-A9WC-06 7 78131086 78131086 T G MAGI2 Missense_Mutation p.D258A 0.19 tolerated(0.06) benign(0.032) TCGA-3N-A9WC-06 7 82585556 82585556 A G PCLO Silent p.G1571G 0.25 TCGA-3N-A9WC-06 7 8272304 8272304 C T ICA1 Silent p.T33T 0.40 TCGA-3N-A9WC-06 7 86394464 86394464 G A GRM3 Translation_Start_Site p.M1? 0.30 tolerated_low_confidence(0.38) benign(0) TCGA-3N-A9WC-06 7 86394597 86394597 C T GRM3 Missense_Mutation p.P46S 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 7 87782642 87782642 G A ADAM22 Splice_Site p.X596_splice 0.46 TCGA-3N-A9WC-06 7 87908851 87908851 C T STEAP4 Nonsense_Mutation p.W414* 0.15 TCGA-3N-A9WC-06 7 88963449 88963449 G A ZNF804B Missense_Mutation p.D385N 0.30 tolerated(0.2) benign(0.172) TCGA-3N-A9WC-06 7 91864215 91864215 G A KRIT1 Missense_Mutation p.P251L 0.29 deleterious(0.03) probably_damaging(0.94) TCGA-3N-A9WC-06 7 92760958 92760958 G A SAMD9L Nonsense_Mutation p.Q1443* 0.28 TCGA-3N-A9WC-06 7 92763773 92763773 C T SAMD9L Silent p.L504L 0.23 TCGA-3N-A9WC-06 7 94919431 94919431 G A PPP1R9A Missense_Mutation p.R1314Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 7 97820103 97820103 C T LMTK2 Silent p.S354S 0.28 TCGA-3N-A9WC-06 7 97860303 97860303 G A TECPR1 Missense_Mutation p.A751V 0.35 deleterious(0.01) benign(0.033) TCGA-3N-A9WC-06 7 97861168 97861168 C T TECPR1 Missense_Mutation p.G641D 0.22 tolerated(0.08) probably_damaging(0.978) TCGA-3N-A9WC-06 7 98509735 98509735 A T TRRAP Missense_Mutation p.M700L 0.18 benign(0.147) TCGA-3N-A9WC-06 7 98649047 98649047 G A SMURF1 Nonsense_Mutation p.Q247* 0.22 TCGA-3N-A9WC-06 7 99459382 99459382 G A CYP3A43 Silent p.G391G 0.34 TCGA-3N-A9WC-06 7 99971995 99971995 A G PILRA Silent p.T131T 0.16 TCGA-3N-A9WC-06 7 99971996 99971996 C G PILRA Missense_Mutation p.R132G 0.16 tolerated(0.12) benign(0.109) TCGA-3N-A9WC-06 8 101092468 101092468 C T RGS22 Missense_Mutation p.R78Q 0.55 tolerated(0.34) probably_damaging(0.999) TCGA-3N-A9WC-06 8 103663506 103663506 G A KLF10 Missense_Mutation p.P352S 0.25 tolerated(0.21) benign(0.025) TCGA-3N-A9WC-06 8 104513272 104513272 A C RIMS2 Missense_Mutation p.K53T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.657) TCGA-3N-A9WC-06 8 105459632 105459632 G A DPYS Silent p.L175L 0.51 TCGA-3N-A9WC-06 8 106814174 106814174 C T ZFPM2 Nonsense_Mutation p.Q622* 0.19 TCGA-3N-A9WC-06 8 106814722 106814722 G A ZFPM2 Silent p.T804T 0.65 TCGA-3N-A9WC-06 8 109241393 109241393 G A EIF3E Missense_Mutation p.S168L 0.60 deleterious(0) benign(0.164) TCGA-3N-A9WC-06 8 110424606 110424606 G A PKHD1L1 Missense_Mutation p.R733Q 0.59 tolerated(0.66) benign(0.001) TCGA-3N-A9WC-06 8 110505970 110505970 A G PKHD1L1 Silent p.E3439E 0.22 TCGA-3N-A9WC-06 8 113308176 113308176 C T CSMD3 Missense_Mutation p.G2834R 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-3N-A9WC-06 8 113317028 113317028 G A CSMD3 Missense_Mutation p.H2730Y 0.19 tolerated(1) benign(0.001) TCGA-3N-A9WC-06 8 119945473 119945473 C T TNFRSF11B Missense_Mutation p.E33K 0.61 deleterious(0.01) benign(0.001) TCGA-3N-A9WC-06 8 121211775 121211775 C T COL14A1 Missense_Mutation p.R283C 0.57 deleterious(0) probably_damaging(0.987) TCGA-3N-A9WC-06 8 121282344 121282344 C T COL14A1 Silent p.F1048F 0.24 TCGA-3N-A9WC-06 8 121554097 121554097 C T SNTB1 Missense_Mutation p.G493R 0.55 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WC-06 8 121561185 121561185 C T SNTB1 Missense_Mutation p.G384S 0.11 deleterious(0.03) probably_damaging(0.951) TCGA-3N-A9WC-06 8 124381394 124381394 G A ATAD2 Missense_Mutation p.P318L 0.53 tolerated(0.12) benign(0.027) TCGA-3N-A9WC-06 8 126011689 126011689 A G SQLE Missense_Mutation p.K15R 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.871) TCGA-3N-A9WC-06 8 131812678 131812678 G A ADCY8 Silent p.F1018F 0.58 TCGA-3N-A9WC-06 8 132052157 132052157 G A ADCY8 Silent p.F141F 0.13 TCGA-3N-A9WC-06 8 133187755 133187755 C T KCNQ3 Missense_Mutation p.G293E 0.15 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-3N-A9WC-06 8 13356704 13356704 C T DLC1 Missense_Mutation p.G293S 0.35 tolerated_low_confidence(0.28) benign(0.093) TCGA-3N-A9WC-06 8 133975256 133975256 C T TG Missense_Mutation p.R1829W 0.57 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 8 139164014 139164014 C T FAM135B Missense_Mutation p.E902K 0.19 tolerated_low_confidence(0.08) benign(0.282) TCGA-3N-A9WC-06 8 139255232 139255232 C T FAM135B Missense_Mutation p.E208K 0.17 deleterious(0) possibly_damaging(0.776) TCGA-3N-A9WC-06 8 139790604 139790604 C T COL22A1 Missense_Mutation p.G584R 0.33 unknown(0) TCGA-3N-A9WC-06 8 143927926 143927926 C T GML Silent p.F99F 0.21 TCGA-3N-A9WC-06 8 144239790 144239790 G A LY6H Silent p.V121V 0.56 TCGA-3N-A9WC-06 8 144919262 144919262 G A NRBP2 Silent p.V404V 0.21 TCGA-3N-A9WC-06 8 144944122 144944122 C T EPPK1 Silent p.E1100E 0.39 TCGA-3N-A9WC-06 8 144946100 144946100 C T EPPK1 Missense_Mutation p.G441D 0.49 benign(0.079) TCGA-3N-A9WC-06 8 144995810 144995810 G T PLEC Missense_Mutation p.L2864I 0.20 benign(0.383) TCGA-3N-A9WC-06 8 145580133 145580133 G A FBXL6 Missense_Mutation p.P351L 0.19 tolerated(0.51) benign(0.003) TCGA-3N-A9WC-06 8 145947723 145947723 G A ZNF251 Missense_Mutation p.A441V 0.56 tolerated(0.06) possibly_damaging(0.787) TCGA-3N-A9WC-06 8 146157926 146157926 G A ZNF16 Missense_Mutation p.H83Y 0.19 tolerated(0.3) benign(0.004) TCGA-3N-A9WC-06 8 15601110 15601110 G A TUSC3 Missense_Mutation p.G309E 0.43 tolerated(0.95) possibly_damaging(0.493) TCGA-3N-A9WC-06 8 16921704 16921704 C T MICU3 Missense_Mutation p.P165S 0.23 deleterious(0) probably_damaging(0.984) TCGA-3N-A9WC-06 8 1824792 1824792 G A ARHGEF10 Silent p.L245L 0.44 TCGA-3N-A9WC-06 8 22005914 22005914 G A LGI3 Missense_Mutation p.A469V 0.30 tolerated(1) benign(0.012) TCGA-3N-A9WC-06 8 22105391 22105391 C T POLR3D Silent p.V77V 0.31 TCGA-3N-A9WC-06 8 22161681 22161681 G A PIWIL2 Silent p.T443T 0.42 TCGA-3N-A9WC-06 8 24250818 24250818 G A ADAMDEC1 Missense_Mutation p.G84E 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WC-06 8 24256534 24256534 G A ADAMDEC1 Missense_Mutation p.D304N 0.38 tolerated(0.09) benign(0.208) TCGA-3N-A9WC-06 8 24366105 24366105 G A ADAM7 3'UTR 0.33 TCGA-3N-A9WC-06 8 27101238 27101238 C T STMN4 Translation_Start_Site p.M1? 0.21 deleterious(0.01) benign(0.311) TCGA-3N-A9WC-06 8 2857480 2857480 G T CSMD1 Missense_Mutation p.P2735T 0.35 possibly_damaging(0.49) TCGA-3N-A9WC-06 8 2857542 2857542 C T CSMD1 Missense_Mutation p.G2714E 0.31 probably_damaging(1) TCGA-3N-A9WC-06 8 28908640 28908640 G - HMBOX1 Frame_Shift_Del p.E411Kfs*15 0.26 TCGA-3N-A9WC-06 8 3611541 3611541 G A CSMD1 Missense_Mutation p.S281F 0.33 probably_damaging(0.986) TCGA-3N-A9WC-06 8 36721941 36721941 G A KCNU1 Missense_Mutation p.M637I 0.21 tolerated(0.45) benign(0) TCGA-3N-A9WC-06 8 38677760 38677760 C T TACC1 Missense_Mutation p.A333V 0.34 tolerated(0.35) benign(0.001) TCGA-3N-A9WC-06 8 39495159 39495159 G A ADAM18 Missense_Mutation p.R255K 0.24 deleterious(0.03) possibly_damaging(0.814) TCGA-3N-A9WC-06 8 39679176 39679176 G A ADAM2 Silent p.F91F 0.33 TCGA-3N-A9WC-06 8 53025689 53025689 G A ST18 3'UTR 0.36 TCGA-3N-A9WC-06 8 53030954 53030954 C T ST18 Missense_Mutation p.E935K 0.31 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WC-06 8 54163365 54163365 G A OPRK1 Missense_Mutation p.S78L 0.41 tolerated(0.4) possibly_damaging(0.453) TCGA-3N-A9WC-06 8 57224797 57224797 G A SDR16C5 Silent p.I128I 0.42 TCGA-3N-A9WC-06 8 59404103 59404103 G A CYP7A1 Silent p.S482S 0.35 TCGA-3N-A9WC-06 8 65517323 65517323 C T CYP7B1 Silent p.G383G 0.42 TCGA-3N-A9WC-06 8 68968102 68968102 G A PREX2 Missense_Mutation p.M377I 0.72 deleterious(0.01) possibly_damaging(0.885) TCGA-3N-A9WC-06 8 68995501 68995501 G A PREX2 Silent p.K635K 0.75 TCGA-3N-A9WC-06 8 69136801 69136801 G A PREX2 Missense_Mutation p.R1572K 0.73 deleterious(0) benign(0.058) TCGA-3N-A9WC-06 8 69688656 69688656 G A C8orf34 Missense_Mutation p.G476E 0.70 deleterious_low_confidence(0.03) possibly_damaging(0.541) TCGA-3N-A9WC-06 8 72129229 72129229 A T EYA1 Silent p.V390V 0.64 TCGA-3N-A9WC-06 8 72267075 72267075 G A EYA1 Silent p.G22G 0.72 TCGA-3N-A9WC-06 8 75171663 75171663 C T JPH1 Silent p.A405A 0.77 TCGA-3N-A9WC-06 8 76471257 76471257 G A HNF4G Missense_Mutation p.E360K 0.71 deleterious(0) probably_damaging(0.948) TCGA-3N-A9WC-06 8 86253846 86253846 C T CA1 Missense_Mutation p.G7R 0.59 deleterious(0.02) benign(0.269) TCGA-3N-A9WC-06 8 94747643 94747643 C T RBM12B Silent p.K332K 0.19 TCGA-3N-A9WC-06 8 99101498 99101498 G A C8orf47 Missense_Mutation p.A85T 0.63 tolerated(0.07) benign(0.005) TCGA-3N-A9WC-06 8 99170333 99170333 G A POP1 Missense_Mutation p.G970E 0.53 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 8 99441637 99441637 G C KCNS2 Missense_Mutation p.R477P 0.13 deleterious_low_confidence(0.02) benign(0) TCGA-3N-A9WC-06 9 100122309 100122309 G A CCDC180 Missense_Mutation p.E1181K 0.25 tolerated(0.39) possibly_damaging(0.486) TCGA-3N-A9WC-06 9 100692597 100692597 A C HEMGN Silent p.T360T 0.20 TCGA-3N-A9WC-06 9 101894855 101894855 C T TGFBR1 Silent p.F136F 0.24 TCGA-3N-A9WC-06 9 104075196 104075196 G A LPPR1 Silent p.R251R 0.16 TCGA-3N-A9WC-06 9 104432829 104432829 C T GRIN3A Missense_Mutation p.R622K 0.22 deleterious(0.02) benign(0.001) TCGA-3N-A9WC-06 9 104448931 104448931 C T GRIN3A Missense_Mutation p.M417I 0.27 tolerated(0.09) benign(0.004) TCGA-3N-A9WC-06 9 107266805 107266805 G A OR13F1 Missense_Mutation p.G88R 0.29 tolerated(0.41) benign(0.025) TCGA-3N-A9WC-06 9 107288843 107288843 G A OR13C4 Silent p.F216F 0.32 TCGA-3N-A9WC-06 9 107367631 107367631 G A OR13C2 Missense_Mutation p.S93F 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-3N-A9WC-06 9 107379931 107379931 C T OR13C9 Missense_Mutation p.M185I 0.21 deleterious(0) benign(0.17) TCGA-3N-A9WC-06 9 107623874 107623874 G A ABCA1 Intron 0.22 TCGA-3N-A9WC-06 9 107623875 107623875 G A ABCA1 Intron 0.22 TCGA-3N-A9WC-06 9 111668728 111668728 G A IKBKAP Missense_Mutation p.P500S 0.33 deleterious(0.01) probably_damaging(0.933) TCGA-3N-A9WC-06 9 112172609 112172609 G A PTPN3 Missense_Mutation p.S467F 0.22 tolerated(0.13) possibly_damaging(0.62) TCGA-3N-A9WC-06 9 113169016 113169016 A T SVEP1 Missense_Mutation p.L2955H 0.29 possibly_damaging(0.89) TCGA-3N-A9WC-06 9 113194251 113194251 C T SVEP1 Missense_Mutation p.G1766E 0.22 probably_damaging(1) TCGA-3N-A9WC-06 9 115759956 115759956 G A ZNF883 RNA 0.30 TCGA-3N-A9WC-06 9 115760008 115760008 C T ZNF883 RNA 0.20 TCGA-3N-A9WC-06 9 116269576 116269576 C T RGS3 Silent p.P365P 0.25 TCGA-3N-A9WC-06 9 117120396 117120396 G A AKNA Silent p.S848S 0.44 TCGA-3N-A9WC-06 9 117692482 117692482 C T TNFSF8 Silent p.T34T 0.21 TCGA-3N-A9WC-06 9 117810655 117810655 C T TNC Missense_Mutation p.G1579E 0.27 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WC-06 9 120474808 120474808 G A TLR4 Silent p.V134V 0.39 TCGA-3N-A9WC-06 9 120475605 120475605 G A TLR4 Missense_Mutation p.S400N 0.22 tolerated(1) benign(0.003) TCGA-3N-A9WC-06 9 120476556 120476556 C A TLR4 Missense_Mutation p.A717D 0.27 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WC-06 9 120476557 120476557 C T TLR4 Silent p.A717A 0.27 TCGA-3N-A9WC-06 9 120476677 120476677 G A TLR4 Nonsense_Mutation p.W757* 0.29 TCGA-3N-A9WC-06 9 121976264 121976264 G A BRINP1 Silent p.I285I 0.32 TCGA-3N-A9WC-06 9 123220784 123220784 G A CDK5RAP2 Silent p.F773F 0.20 TCGA-3N-A9WC-06 9 123676516 123676516 G A TRAF1 Silent p.F97F 0.22 TCGA-3N-A9WC-06 9 125289191 125289191 G A OR1N1 Missense_Mutation p.L128F 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-3N-A9WC-06 9 125377346 125377346 G A OR1Q1 Missense_Mutation p.M110I 0.32 tolerated(0.24) benign(0.023) TCGA-3N-A9WC-06 9 125486304 125486304 C T OR1L4 Silent p.G12G 0.27 TCGA-3N-A9WC-06 9 125613716 125613717 - T RC3H2 Splice_Site p.X1040_splice 0.21 TCGA-3N-A9WC-06 9 127572408 127572408 C T OLFML2A Missense_Mutation p.S559F 0.23 deleterious(0) possibly_damaging(0.788) TCGA-3N-A9WC-06 9 128201178 128201178 G T MAPKAP1 Silent p.S519S 0.19 TCGA-3N-A9WC-06 9 129143381 129143381 G A MVB12B Nonsense_Mutation p.W81* 0.21 TCGA-3N-A9WC-06 9 129641691 129641691 A T ZBTB34 Translation_Start_Site p.M1? 0.28 deleterious(0) probably_damaging(0.989) TCGA-3N-A9WC-06 9 130149475 130149475 G A GARNL3 Missense_Mutation p.D798N 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-3N-A9WC-06 9 130913917 130913917 G A LCN2 Silent p.R92R 0.38 TCGA-3N-A9WC-06 9 130952717 130952717 G T CIZ1 Silent p.L59L 0.31 TCGA-3N-A9WC-06 9 131151622 131151622 C T URM1 Missense_Mutation p.P91S 0.20 tolerated_low_confidence(0.07) benign(0.001) TCGA-3N-A9WC-06 9 131152038 131152038 C T URM1 3'UTR 0.24 TCGA-3N-A9WC-06 9 131468031 131468031 C T PKN3 Missense_Mutation p.P95L 0.42 deleterious(0.03) benign(0.147) TCGA-3N-A9WC-06 9 131475845 131475845 G A PKN3 Missense_Mutation p.R387K 0.20 tolerated(0.49) benign(0.01) TCGA-3N-A9WC-06 9 131483504 131483504 G A ZDHHC12 Missense_Mutation p.L254F 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-3N-A9WC-06 9 131483505 131483505 G A ZDHHC12 Silent p.T253T 0.35 TCGA-3N-A9WC-06 9 133960971 133960971 C A LAMC3 Missense_Mutation p.S1364Y 0.14 tolerated(1) benign(0.122) TCGA-3N-A9WC-06 9 135210004 135210004 C T SETX Missense_Mutation p.E277K 0.27 tolerated(0.14) benign(0.01) TCGA-3N-A9WC-06 9 136199415 136199415 G A SURF6 Missense_Mutation p.P192L 0.28 tolerated(0.22) benign(0.177) TCGA-3N-A9WC-06 9 136508609 136508609 G A DBH Missense_Mutation p.M273I 0.33 tolerated(0.42) benign(0.004) TCGA-3N-A9WC-06 9 136629201 136629201 C T VAV2 Missense_Mutation p.E874K 0.19 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WC-06 9 137591912 137591912 G A COL5A1 Silent p.G145G 0.19 TCGA-3N-A9WC-06 9 137681015 137681015 C T COL5A1 Silent p.F887F 0.20 TCGA-3N-A9WC-06 9 138454276 138454276 G A PAEP Missense_Mutation p.R78K 0.26 tolerated(1) benign(0.191) TCGA-3N-A9WC-06 9 138642007 138642007 C T KCNT1 Silent p.I106I 0.26 TCGA-3N-A9WC-06 9 138903404 138903404 G A NACC2 Silent p.A574A 0.50 TCGA-3N-A9WC-06 9 139407920 139407920 G A NOTCH1 Silent p.S759S 0.27 TCGA-3N-A9WC-06 9 139569251 139569251 G A AGPAT2 Silent p.I199I 0.44 TCGA-3N-A9WC-06 9 139820268 139820268 C T TRAF2 Missense_Mutation p.P474L 0.30 deleterious(0) possibly_damaging(0.617) TCGA-3N-A9WC-06 9 139918659 139918659 G A ABCA2 Silent p.P32P 0.36 TCGA-3N-A9WC-06 9 139929470 139929470 G A C9orf139 Silent p.R179R 0.19 TCGA-3N-A9WC-06 9 139929471 139929471 G A C9orf139 Missense_Mutation p.G180S 0.20 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WC-06 9 140329766 140329766 C T ENTPD8 Missense_Mutation p.D396N 0.36 tolerated(0.96) benign(0.026) TCGA-3N-A9WC-06 9 140477577 140477577 G A ZMYND19 Missense_Mutation p.P133L 0.28 deleterious(0) possibly_damaging(0.722) TCGA-3N-A9WC-06 9 14750189 14750189 G A FREM1 Silent p.S1831S 0.16 TCGA-3N-A9WC-06 9 14812985 14812985 C T FREM1 Silent p.E906E 0.18 TCGA-3N-A9WC-06 9 20413981 20413981 G A MLLT3 Missense_Mutation p.S288L 0.24 tolerated(0.45) benign(0) TCGA-3N-A9WC-06 9 2054700 2054700 C T SMARCA2 Missense_Mutation p.R384W 0.24 possibly_damaging(0.689) TCGA-3N-A9WC-06 9 21216772 21216772 G A IFNA16 Missense_Mutation p.S178L 0.28 tolerated(0.08) possibly_damaging(0.645) TCGA-3N-A9WC-06 9 27292367 27292367 C T EQTN Intron 0.32 TCGA-3N-A9WC-06 9 32633229 32633229 G A TAF1L Silent p.I783I 0.23 TCGA-3N-A9WC-06 9 32635562 32635562 C T TAF1L Missense_Mutation p.D6N 0.28 tolerated_low_confidence(0.38) benign(0.001) TCGA-3N-A9WC-06 9 34500829 34500829 C T DNAI1 Silent p.A337A 0.40 TCGA-3N-A9WC-06 9 38396492 38396492 C T ALDH1B1 Silent p.I249I 0.24 TCGA-3N-A9WC-06 9 4118771 4118771 G A GLIS3 Missense_Mutation p.S236L 0.30 tolerated(0.07) benign(0.004) TCGA-3N-A9WC-06 9 441872 441872 C T DOCK8 Intron 0.20 TCGA-3N-A9WC-06 9 4849543 4849543 C T RCL1 Missense_Mutation p.P322S 0.42 deleterious(0.04) benign(0.196) TCGA-3N-A9WC-06 9 6980997 6980997 C T KDM4C Nonsense_Mutation p.Q332* 0.22 TCGA-3N-A9WC-06 9 711082 711082 T G KANK1 Missense_Mutation p.F106V 0.30 tolerated(0.18) benign(0.061) TCGA-3N-A9WC-06 9 71628530 71628530 G A PRKACG Missense_Mutation p.S160L 0.29 deleterious(0.04) benign(0.291) TCGA-3N-A9WC-06 9 72047547 72047547 G A APBA1 Missense_Mutation p.R783C 0.23 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WC-06 9 72913049 72913049 G A SMC5 Silent p.L407L 0.45 TCGA-3N-A9WC-06 9 73461489 73461489 C T TRPM3 Missense_Mutation p.D161N 0.20 deleterious(0.01) benign(0.023) TCGA-3N-A9WC-06 9 77275646 77275646 C T RORB Nonsense_Mutation p.Q251* 0.31 TCGA-3N-A9WC-06 9 77365581 77365581 G A TRPM6 Silent p.L1686L 0.26 TCGA-3N-A9WC-06 9 77746705 77746705 C T OSTF1 Silent p.S72S 0.23 TCGA-3N-A9WC-06 9 78803514 78803514 C T PCSK5 Missense_Mutation p.S768F 0.25 tolerated(0.69) benign(0.003) TCGA-3N-A9WC-06 9 78936462 78936462 G A PCSK5 Missense_Mutation p.E1310K 0.30 tolerated(0.56) benign(0.004) TCGA-3N-A9WC-06 9 79318498 79318498 C T PRUNE2 Silent p.L2677L 0.35 TCGA-3N-A9WC-06 9 79320208 79320208 G A PRUNE2 Missense_Mutation p.H2328Y 0.26 deleterious(0.02) possibly_damaging(0.642) TCGA-3N-A9WC-06 9 80049382 80049382 C T GNA14 Silent p.R122R 0.30 TCGA-3N-A9WC-06 9 8319828 8319828 C T PTPRD Intron 0.19 TCGA-3N-A9WC-06 9 84530465 84530465 C T SPATA31D5P RNA 0.19 TCGA-3N-A9WC-06 9 8504288 8504288 C T PTPRD Missense_Mutation p.E599K 0.26 tolerated(0.84) probably_damaging(0.983) TCGA-3N-A9WC-06 9 86586927 86586927 G A HNRNPK Missense_Mutation p.P275S 0.31 tolerated(0.1) benign(0.301) TCGA-3N-A9WC-06 9 86616422 86616422 C T RMI1 Missense_Mutation p.S174F 0.21 tolerated(0.09) benign(0.025) TCGA-3N-A9WC-06 9 90534165 90534165 C T SPATA31C1 Intron 0.11 TCGA-3N-A9WC-06 9 91686142 91686142 G A SHC3 Missense_Mutation p.S252F 0.24 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WC-06 9 95618565 95618565 G A ZNF484 Silent p.F19F 0.19 TCGA-3N-A9WC-06 9 95797901 95797901 C T FGD3 3'UTR 0.20 TCGA-3N-A9WC-06 9 96097715 96097715 G A C9orf129 Silent p.F102F 0.21 TCGA-3N-A9WC-06 9 97082725 97082725 G A NUTM2F Missense_Mutation p.P378L 0.18 tolerated(0.07) benign(0.052) TCGA-3N-A9WC-06 9 99489462 99489462 C T RP11-535M15.2 RNA 0.29 TCGA-3N-A9WC-06 X 100125788 100125788 G A NOX1 Silent p.L21L 0.55 TCGA-3N-A9WC-06 X 100290629 100290629 G A TRMT2B Silent p.I194I 0.50 TCGA-3N-A9WC-06 X 100808331 100808331 C T ARMCX1 Missense_Mutation p.P140S 0.70 tolerated_low_confidence(0.16) benign(0.012) TCGA-3N-A9WC-06 X 101620169 101620169 G A NXF2B Missense_Mutation p.P426L 0.25 deleterious(0.02) possibly_damaging(0.516) TCGA-3N-A9WC-06 X 101912185 101912185 A T GPRASP1 Missense_Mutation p.Y1115F 0.56 deleterious(0.02) probably_damaging(0.997) TCGA-3N-A9WC-06 X 105168911 105168911 G A NRK Missense_Mutation p.R1068Q 0.50 tolerated(0.28) benign(0.024) TCGA-3N-A9WC-06 X 105881065 105881065 C T CXorf57 Missense_Mutation p.S495F 0.42 deleterious(0.01) possibly_damaging(0.509) TCGA-3N-A9WC-06 X 107430443 107430443 G A COL4A6 Missense_Mutation p.P613S 0.46 benign(0.099) TCGA-3N-A9WC-06 X 109694635 109694635 G A RGAG1 Missense_Mutation p.D264N 0.51 tolerated(0.06) probably_damaging(1) TCGA-3N-A9WC-06 X 109694692 109694693 CC T RGAG1 Frame_Shift_Del p.P283Sfs*20 0.35 TCGA-3N-A9WC-06 X 109764483 109764483 A G TDGF1P3 RNA 0.65 TCGA-3N-A9WC-06 X 11174694 11174694 G A ARHGAP6 Missense_Mutation p.P621L 0.53 deleterious(0) probably_damaging(0.973) TCGA-3N-A9WC-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.53 TCGA-3N-A9WC-06 X 115303801 115303801 G A AGTR2 Missense_Mutation p.D90N 0.54 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 X 11779022 11779022 C T MSL3 Silent p.L116L 0.55 TCGA-3N-A9WC-06 X 118221581 118221581 G A KIAA1210 Silent p.I1204I 0.35 TCGA-3N-A9WC-06 X 118223644 118223644 G A KIAA1210 Missense_Mutation p.P517S 0.54 tolerated(0.67) benign(0.008) TCGA-3N-A9WC-06 X 122387391 122387391 G A GRIA3 Missense_Mutation p.R169Q 0.62 tolerated(0.11) possibly_damaging(0.87) TCGA-3N-A9WC-06 X 123554270 123554270 G A TENM1 Silent p.L1625L 0.57 TCGA-3N-A9WC-06 X 128692837 128692837 C T OCRL Missense_Mutation p.A194V 0.41 tolerated(0.25) benign(0.002) TCGA-3N-A9WC-06 X 130408991 130408991 G A IGSF1 Silent p.L1157L 0.55 TCGA-3N-A9WC-06 X 132160103 132160103 G A USP26 Missense_Mutation p.P716S 0.50 tolerated(0.63) benign(0.001) TCGA-3N-A9WC-06 X 140993622 140993622 C T MAGEC1 Silent p.F144F 0.60 TCGA-3N-A9WC-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.56 deleterious_low_confidence(0) benign(0.006) TCGA-3N-A9WC-06 X 141291451 141291451 G A MAGEC2 Missense_Mutation p.S108L 0.68 tolerated(0.23) possibly_damaging(0.849) TCGA-3N-A9WC-06 X 151900427 151900427 C T MAGEA12 Missense_Mutation p.R125Q 0.50 tolerated(0.53) benign(0.012) TCGA-3N-A9WC-06 X 153216374 153216374 G A HCFC1 Missense_Mutation p.R1865C 0.60 deleterious(0) probably_damaging(0.982) TCGA-3N-A9WC-06 X 154157483 154157483 C T F8 Missense_Mutation p.E1528K 0.55 tolerated(0.62) benign(0.004) TCGA-3N-A9WC-06 X 18195740 18195740 G A BEND2 Missense_Mutation p.H527Y 0.55 deleterious(0.01) possibly_damaging(0.884) TCGA-3N-A9WC-06 X 26157817 26157817 G A MAGEB18 Missense_Mutation p.D239N 0.69 deleterious(0) benign(0.19) TCGA-3N-A9WC-06 X 27999214 27999214 C T DCAF8L1 Missense_Mutation p.E80K 0.53 tolerated_low_confidence(0.06) benign(0.001) TCGA-3N-A9WC-06 X 2931197 2931197 C T ARSH Silent p.Y108Y 0.41 TCGA-3N-A9WC-06 X 30254956 30254956 C T MAGEB3 Silent p.F305F 0.35 TCGA-3N-A9WC-06 X 3239655 3239655 G A MXRA5 Silent p.S1357S 0.47 TCGA-3N-A9WC-06 X 3239656 3239656 G A MXRA5 Missense_Mutation p.S1357F 0.47 tolerated(0.69) benign(0.017) TCGA-3N-A9WC-06 X 34148406 34148406 C T FAM47A Missense_Mutation p.D664N 0.65 deleterious(0.01) probably_damaging(0.981) TCGA-3N-A9WC-06 X 34962622 34962622 G A FAM47B Silent p.G558G 0.57 TCGA-3N-A9WC-06 X 38525479 38525479 C T TSPAN7 Silent p.L62L 0.39 TCGA-3N-A9WC-06 X 47435940 47435940 C T SYN1 Missense_Mutation p.D313N 0.48 deleterious(0.01) probably_damaging(0.977) TCGA-3N-A9WC-06 X 48320440 48320440 C T SLC38A5 Missense_Mutation p.G242R 0.52 tolerated(0.07) benign(0.392) TCGA-3N-A9WC-06 X 49230825 49230825 G A GAGE2C Missense_Mutation p.E77K 0.21 probably_damaging(0.995) TCGA-3N-A9WC-06 X 52825608 52825608 C T SPANXN5 Missense_Mutation p.E47K 0.49 tolerated(0.39) benign(0.064) TCGA-3N-A9WC-06 X 6451846 6451846 C T VCX3A Silent p.E167E 0.20 TCGA-3N-A9WC-06 X 65408376 65408376 G A HEPH Silent p.R321R 0.45 TCGA-3N-A9WC-06 X 69263469 69263469 G A AWAT2 Missense_Mutation p.L111F 0.62 tolerated(0.09) benign(0.014) TCGA-3N-A9WC-06 X 69424192 69424192 G A DGAT2L6 Missense_Mutation p.E229K 0.73 deleterious(0) possibly_damaging(0.529) TCGA-3N-A9WC-06 X 70127627 70127627 C T TEX11 5'UTR 0.67 TCGA-3N-A9WC-06 X 71350682 71350682 C T RGAG4 Missense_Mutation p.A237T 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-3N-A9WC-06 X 71359877 71359877 G A NHSL2 Missense_Mutation p.D827N 0.60 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WC-06 X 71886103 71886103 C T PHKA1 Silent p.E254E 0.56 TCGA-3N-A9WC-06 X 71895936 71895936 G A PHKA1 Missense_Mutation p.S201L 0.35 deleterious(0) probably_damaging(0.928) TCGA-3N-A9WC-06 X 7194087 7194087 G A STS Missense_Mutation p.G306E 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-3N-A9WC-06 X 75003272 75003272 T C MAGEE2 3'UTR 0.48 TCGA-3N-A9WC-06 X 78010793 78010793 C T LPAR4 Missense_Mutation p.P143S 0.38 deleterious(0) probably_damaging(1) TCGA-3N-A9WC-06 X 83129444 83129444 G A CYLC1 Silent p.K576K 0.50 TCGA-3N-A9WC-06 X 8434334 8434334 G A VCX3B Silent p.E217E 0.19 TCGA-3N-A9WC-06 X 84526384 84526384 C T ZNF711 Silent p.V612V 0.71 TCGA-3N-A9WC-06 X 84560850 84560850 C T POF1B Missense_Mutation p.E462K 0.49 deleterious(0.02) possibly_damaging(0.628) TCGA-3N-A9WC-06 X 86087151 86087151 C T DACH2 Missense_Mutation p.S598L 0.53 tolerated_low_confidence(0.11) benign(0) TCGA-3N-A9WD-06 10 104594641 104594641 C T CYP17A1 Silent p.K189K 0.23 TCGA-3N-A9WD-06 10 105974130 105974130 C T WDR96 Silent p.V157V 0.27 TCGA-3N-A9WD-06 10 115312812 115312812 C T HABP2 5'UTR 0.16 TCGA-3N-A9WD-06 10 115345557 115345557 G A HABP2 Missense_Mutation p.G460R 0.17 tolerated(0.08) probably_damaging(0.962) TCGA-3N-A9WD-06 10 115607048 115607048 A G DCLRE1A Silent p.G724G 0.08 TCGA-3N-A9WD-06 10 123843616 123843616 C T TACC2 Missense_Mutation p.P534L 0.17 benign(0.022) TCGA-3N-A9WD-06 10 123985886 123985886 C T TACC2 Silent p.D2538D 0.14 TCGA-3N-A9WD-06 10 124389378 124389378 C T DMBT1 Silent p.G1768G 0.15 TCGA-3N-A9WD-06 10 129347818 129347818 C T NPS Missense_Mutation p.P25L 0.06 deleterious(0) probably_damaging(0.94) TCGA-3N-A9WD-06 10 13336479 13336479 G A PHYH Silent p.V121V 0.18 TCGA-3N-A9WD-06 10 134018473 134018473 C T DPYSL4 3'UTR 0.19 TCGA-3N-A9WD-06 10 134174990 134174990 T C LRRC27 Silent p.D400D 0.09 TCGA-3N-A9WD-06 10 134981782 134981782 C T KNDC1 Missense_Mutation p.P109L 0.10 deleterious(0) probably_damaging(0.972) TCGA-3N-A9WD-06 10 135345137 135345137 C T CYP2E1 Missense_Mutation p.S129F 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WD-06 10 15255572 15255572 G A FAM171A1 Missense_Mutation p.S672F 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-3N-A9WD-06 10 15255803 15255803 G A FAM171A1 Missense_Mutation p.S595F 0.11 deleterious(0.01) possibly_damaging(0.639) TCGA-3N-A9WD-06 10 20466300 20466300 G A PLXDC2 Silent p.Q341Q 0.14 TCGA-3N-A9WD-06 10 21101791 21101791 C T NEBL Missense_Mutation p.V809M 0.34 deleterious(0) possibly_damaging(0.841) TCGA-3N-A9WD-06 10 24813448 24813448 C T KIAA1217 Missense_Mutation p.R885C 0.23 deleterious(0) benign(0.02) TCGA-3N-A9WD-06 10 25684869 25684869 T C GPR158 Silent p.V346V 0.11 TCGA-3N-A9WD-06 10 25886955 25886955 G A GPR158 Silent p.G800G 0.09 TCGA-3N-A9WD-06 10 26802560 26802560 G A APBB1IP Missense_Mutation p.E262K 0.22 deleterious(0.01) probably_damaging(0.925) TCGA-3N-A9WD-06 10 27687610 27687610 G A PTCHD3 Silent p.I639I 0.11 TCGA-3N-A9WD-06 10 27702379 27702379 C T PTCHD3 Silent p.P267P 0.21 TCGA-3N-A9WD-06 10 27703249 27703249 G A PTCHD3 5'UTR 0.19 TCGA-3N-A9WD-06 10 28276336 28276336 C T ARMC4 Missense_Mutation p.E121K 0.10 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 10 28378750 28378750 G A MPP7 Missense_Mutation p.R325C 0.14 deleterious(0.02) probably_damaging(0.964) TCGA-3N-A9WD-06 10 31137458 31137458 A C ZNF438 Splice_Site p.X625_splice 0.10 TCGA-3N-A9WD-06 10 31809786 31809786 T C ZEB1 Missense_Mutation p.L509S 0.14 tolerated(0.38) benign(0.082) TCGA-3N-A9WD-06 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.16 deleterious(0) possibly_damaging(0.636) TCGA-3N-A9WD-06 10 37508454 37508454 G A ANKRD30A Missense_Mutation p.D1216N 0.16 deleterious(0) possibly_damaging(0.811) TCGA-3N-A9WD-06 10 37508477 37508477 G T ANKRD30A Missense_Mutation p.L1223F 0.32 deleterious(0) possibly_damaging(0.86) TCGA-3N-A9WD-06 10 47086912 47086912 C T NPY4R Silent p.F43F 0.06 TCGA-3N-A9WD-06 10 50285301 50285301 G A VSTM4 Silent p.I199I 0.09 TCGA-3N-A9WD-06 10 52573680 52573680 C T A1CF Silent p.G428G 0.07 TCGA-3N-A9WD-06 10 5260710 5260710 C T AKR1C4 Missense_Mutation p.S320L 0.11 tolerated(0.33) benign(0.058) TCGA-3N-A9WD-06 10 54527855 54527855 G A MBL2 3'UTR 0.19 TCGA-3N-A9WD-06 10 55569295 55569295 C T PCDH15 Missense_Mutation p.R1522K 0.14 benign(0) TCGA-3N-A9WD-06 10 5948034 5948034 C T FBXO18 Silent p.F115F 0.17 TCGA-3N-A9WD-06 10 62023665 62023665 C T ANK3 Silent p.A209A 0.17 TCGA-3N-A9WD-06 10 62652655 62652655 C T RHOBTB1 Missense_Mutation p.R132Q 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-3N-A9WD-06 10 70405605 70405605 C T TET1 Missense_Mutation p.P1040L 0.10 tolerated(0.31) benign(0.023) TCGA-3N-A9WD-06 10 70992778 70992778 A T HKDC1 Missense_Mutation p.E128D 0.24 tolerated(1) benign(0.001) TCGA-3N-A9WD-06 10 72300962 72300962 G A PALD1 Silent p.A671A 0.10 TCGA-3N-A9WD-06 10 86007381 86007381 C T RGR Silent p.I38I 0.15 TCGA-3N-A9WD-06 10 87628808 87628808 G A GRID1 Silent p.L304L 0.13 TCGA-3N-A9WD-06 10 90492272 90492272 G A LIPK Missense_Mutation p.M211I 0.16 tolerated(0.2) benign(0.004) TCGA-3N-A9WD-06 10 95126197 95126197 G A MYOF Missense_Mutation p.P902L 0.15 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 10 96612490 96612490 G A CYP2C19 Missense_Mutation p.G431E 0.08 deleterious(0) possibly_damaging(0.901) TCGA-3N-A9WD-06 10 96741065 96741065 C T CYP2C9 Missense_Mutation p.P363S 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-3N-A9WD-06 10 96741077 96741077 C T CYP2C9 Missense_Mutation p.P367S 0.12 deleterious(0.01) possibly_damaging(0.76) TCGA-3N-A9WD-06 11 101347181 101347181 C T TRPC6 Missense_Mutation p.G532D 0.15 deleterious(0.03) probably_damaging(1) TCGA-3N-A9WD-06 11 102573489 102573489 C T MMP27 Missense_Mutation p.G205E 0.13 tolerated(0.17) possibly_damaging(0.511) TCGA-3N-A9WD-06 11 102826427 102826427 G A MMP13 Missense_Mutation p.P3L 0.12 tolerated(0.11) benign(0.046) TCGA-3N-A9WD-06 11 106579281 106579281 C T GUCY1A2 Missense_Mutation p.G681R 0.18 tolerated(0.24) probably_damaging(0.974) TCGA-3N-A9WD-06 11 106647238 106647238 G A GUCY1A2 Missense_Mutation p.P588L 0.17 tolerated(0.15) benign(0.007) TCGA-3N-A9WD-06 11 108384738 108384738 G A EXPH5 Missense_Mutation p.S499L 0.23 tolerated(0.11) benign(0.006) TCGA-3N-A9WD-06 11 110453094 110453094 G A ARHGAP20 Silent p.S557S 0.19 TCGA-3N-A9WD-06 11 113802575 113802575 C T HTR3B Silent p.I118I 0.16 TCGA-3N-A9WD-06 11 113803789 113803789 G A HTR3B Missense_Mutation p.G224R 0.13 tolerated(0.17) probably_damaging(0.987) TCGA-3N-A9WD-06 11 113803790 113803790 G A HTR3B Missense_Mutation p.G224E 0.11 tolerated(0.18) possibly_damaging(0.585) TCGA-3N-A9WD-06 11 113853917 113853917 C T HTR3A Silent p.P156P 0.19 TCGA-3N-A9WD-06 11 113857675 113857675 G A HTR3A Missense_Mutation p.E387K 0.19 tolerated(0.15) possibly_damaging(0.565) TCGA-3N-A9WD-06 11 117973917 117973917 G A TMPRSS4 Missense_Mutation p.E87K 0.14 deleterious(0) possibly_damaging(0.786) TCGA-3N-A9WD-06 11 118074302 118074302 G A AMICA1 Missense_Mutation p.R205C 0.17 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 11 118133223 118133223 G A MPZL2 Silent p.T122T 0.21 TCGA-3N-A9WD-06 11 118630694 118630694 T A DDX6 Silent p.L267L 0.25 TCGA-3N-A9WD-06 11 123778073 123778073 C T OR8D4 Missense_Mutation p.S312F 0.50 tolerated_low_confidence(0.05) benign(0.022) TCGA-3N-A9WD-06 11 123900690 123900690 C T OR10G8 Missense_Mutation p.R121C 0.18 deleterious(0.01) probably_damaging(0.957) TCGA-3N-A9WD-06 11 124135013 124135013 C T OR8G5 Silent p.F97F 0.09 TCGA-3N-A9WD-06 11 124508529 124508529 T C SIAE Missense_Mutation p.E410G 0.23 tolerated(0.24) benign(0.045) TCGA-3N-A9WD-06 11 130275564 130275564 C A ADAMTS8 Missense_Mutation p.Q853H 0.12 deleterious(0) benign(0.089) TCGA-3N-A9WD-06 11 134181006 134181006 C T GLB1L3 Missense_Mutation p.P410L 0.19 tolerated(0.12) benign(0.023) TCGA-3N-A9WD-06 11 1477621 1477621 G A BRSK2 Missense_Mutation p.R617Q 0.27 deleterious(0.02) benign(0.147) TCGA-3N-A9WD-06 11 14865435 14865435 C T PDE3B Missense_Mutation p.P795S 0.23 tolerated(0.79) benign(0.024) TCGA-3N-A9WD-06 11 1629673 1629673 G A KRTAP5-3 5'UTR 0.17 TCGA-3N-A9WD-06 11 1629674 1629674 G A KRTAP5-3 5'UTR 0.17 TCGA-3N-A9WD-06 11 17554867 17554867 C T USH1C Silent p.V13V 0.21 TCGA-3N-A9WD-06 11 18478256 18478256 A G LDHAL6A Missense_Mutation p.K10R 0.21 tolerated(0.37) benign(0.005) TCGA-3N-A9WD-06 11 19735281 19735281 C T NAV2 Silent p.L14L 0.30 TCGA-3N-A9WD-06 11 27077134 27077134 C T BBOX1 Missense_Mutation p.L53F 0.10 tolerated(0.06) benign(0.149) TCGA-3N-A9WD-06 11 30034136 30034136 C T KCNA4 Silent p.R30R 0.24 TCGA-3N-A9WD-06 11 31115697 31115697 G A DCDC1 Missense_Mutation p.S673F 0.20 deleterious(0) benign(0.44) TCGA-3N-A9WD-06 11 33120613 33120613 C T CSTF3 Missense_Mutation p.M340I 0.15 tolerated(0.08) benign(0.055) TCGA-3N-A9WD-06 11 35287300 35287300 C T SLC1A2 Missense_Mutation p.R476K 0.11 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 11 380422 380422 G A B4GALNT4 Missense_Mutation p.G949E 0.18 deleterious(0) unknown(0) TCGA-3N-A9WD-06 11 40137573 40137573 G A LRRC4C Silent p.I90I 0.15 TCGA-3N-A9WD-06 11 4511006 4511006 C T OR52K1 Silent p.I292I 0.18 TCGA-3N-A9WD-06 11 45671531 45671531 C T CHST1 Missense_Mutation p.E315K 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-3N-A9WD-06 11 45671550 45671550 G A CHST1 Silent p.N308N 0.20 TCGA-3N-A9WD-06 11 46332584 46332584 G A CREB3L1 Silent p.E199E 0.19 TCGA-3N-A9WD-06 11 47363664 47363664 C T MYBPC3 Silent p.V556V 0.15 TCGA-3N-A9WD-06 11 4791144 4791144 C T OR51F1 Missense_Mutation p.E2K 0.38 tolerated(0.8) benign(0.004) TCGA-3N-A9WD-06 11 48152033 48152033 C T PTPRJ Silent p.F460F 0.16 TCGA-3N-A9WD-06 11 48267381 48267381 C T OR4X2 Silent p.F242F 0.22 TCGA-3N-A9WD-06 11 48347263 48347263 G A OR4C3 Silent p.G257G 0.06 TCGA-3N-A9WD-06 11 48510935 48510935 G A OR4A47 Silent p.V197V 0.19 TCGA-3N-A9WD-06 11 5020270 5020270 C T OR51L1 Missense_Mutation p.P20S 0.20 deleterious(0.05) benign(0.205) TCGA-3N-A9WD-06 11 5173206 5173206 G A OR52A1 Silent p.L132L 0.29 TCGA-3N-A9WD-06 11 5344585 5344585 G A OR51B2 3'UTR 0.30 TCGA-3N-A9WD-06 11 5345061 5345061 G A OR51B2 Missense_Mutation p.P156L 0.14 deleterious(0) probably_damaging(0.99) TCGA-3N-A9WD-06 11 5461857 5461857 C T OR51I1 Silent p.V296V 0.21 TCGA-3N-A9WD-06 11 55541166 55541166 G A OR5D13 Missense_Mutation p.E85K 0.18 tolerated(0.06) possibly_damaging(0.703) TCGA-3N-A9WD-06 11 55681973 55681973 G A OR5W2 Missense_Mutation p.A29V 0.14 tolerated(1) benign(0.002) TCGA-3N-A9WD-06 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.31 TCGA-3N-A9WD-06 11 55872762 55872762 A G OR8H2 Missense_Mutation p.T82A 0.18 tolerated(0.18) possibly_damaging(0.45) TCGA-3N-A9WD-06 11 558980 558980 C T C11orf35 Splice_Site p.X12_splice 0.25 TCGA-3N-A9WD-06 11 56020513 56020514 - T OR5T3 Frame_Shift_Ins p.Y281Lfs*21 0.19 TCGA-3N-A9WD-06 11 56058380 56058380 G A OR8H1 Silent p.L53L 0.12 TCGA-3N-A9WD-06 11 56127806 56127806 C T OR8J1 Silent p.F28F 0.10 TCGA-3N-A9WD-06 11 56344643 56344643 G A OR5M10 Silent p.I185I 0.13 TCGA-3N-A9WD-06 11 57137445 57137445 C T P2RX3 Missense_Mutation p.S390L 0.15 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 11 57154890 57154890 G A PRG2 3'UTR 0.29 TCGA-3N-A9WD-06 11 57254575 57254575 G A SLC43A1 Missense_Mutation p.P509L 0.22 deleterious(0.02) possibly_damaging(0.616) TCGA-3N-A9WD-06 11 57505896 57505896 C T TMX2 Silent p.T145T 0.20 TCGA-3N-A9WD-06 11 57947378 57947378 C T OR9Q1 Silent p.I154I 0.18 TCGA-3N-A9WD-06 11 58714516 58714516 C T GLYATL1 Intron 0.21 TCGA-3N-A9WD-06 11 58714527 58714527 C T GLYATL1 Missense_Mutation p.L53F 0.12 tolerated(0.07) benign(0) TCGA-3N-A9WD-06 11 59245137 59245137 C T OR4D10 Missense_Mutation p.P79S 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-3N-A9WD-06 11 5968909 5968909 C T OR56A3 Silent p.F111F 0.16 TCGA-3N-A9WD-06 11 59947376 59947376 G A MS4A6A Silent p.S98S 0.35 TCGA-3N-A9WD-06 11 6008099 6008099 G A OR52L1 Missense_Mutation p.S21L 0.12 deleterious(0.01) benign(0.028) TCGA-3N-A9WD-06 11 61511713 61511713 C T DAGLA Missense_Mutation p.R961C 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-3N-A9WD-06 11 6221095 6221095 G A OR52W1 Missense_Mutation p.M214I 0.18 tolerated(0.09) benign(0) TCGA-3N-A9WD-06 11 62301240 62301240 G A AHNAK Missense_Mutation p.P217S 0.14 possibly_damaging(0.688) TCGA-3N-A9WD-06 11 62491163 62491163 G A HNRNPUL2 Missense_Mutation p.R263C 0.15 deleterious(0) possibly_damaging(0.897) TCGA-3N-A9WD-06 11 62763527 62763527 C T SLC22A8 Missense_Mutation p.E287K 0.21 deleterious(0.02) probably_damaging(1) TCGA-3N-A9WD-06 11 64366309 64366309 G A SLC22A12 Silent p.L328L 0.11 TCGA-3N-A9WD-06 11 64599058 64599058 G A CDC42BPG Missense_Mutation p.P1075S 0.19 tolerated(0.27) probably_damaging(0.998) TCGA-3N-A9WD-06 11 64800004 64800004 C T SNX15 Silent p.F79F 0.19 TCGA-3N-A9WD-06 11 64889312 64889312 G A FAU Intron 0.33 TCGA-3N-A9WD-06 11 65294436 65294436 C T SCYL1 Missense_Mutation p.P233S 0.18 deleterious(0) possibly_damaging(0.588) TCGA-3N-A9WD-06 11 65373447 65373447 G A MAP3K11 Missense_Mutation p.S570F 0.32 deleterious(0) benign(0.261) TCGA-3N-A9WD-06 11 65620187 65620187 G A SNX32 Silent p.E333E 0.33 TCGA-3N-A9WD-06 11 66373260 66373260 G A CCS Silent p.E253E 0.17 TCGA-3N-A9WD-06 11 66373321 66373321 C T CCS Missense_Mutation p.L274F 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3N-A9WD-06 11 69949195 69949195 T C ANO1 Silent p.F155F 0.19 TCGA-3N-A9WD-06 11 7083654 7083654 G A NLRP14 Silent p.G965G 0.26 TCGA-3N-A9WD-06 11 73021423 73021423 G A ARHGEF17 Silent p.E580E 0.19 TCGA-3N-A9WD-06 11 77911849 77911849 A T USP35 Missense_Mutation p.I398F 0.18 tolerated(0.13) unknown(0) TCGA-3N-A9WD-06 11 78372577 78372577 G A TENM4 Missense_Mutation p.P2490S 0.24 deleterious(0.05) benign(0.045) TCGA-3N-A9WD-06 11 7960409 7960409 C T OR10A3 Missense_Mutation p.R220Q 0.31 tolerated(0.09) benign(0.027) TCGA-3N-A9WD-06 11 83180407 83180407 C T DLG2 Missense_Mutation p.R819K 0.16 deleterious(0) probably_damaging(0.97) TCGA-3N-A9WD-06 11 83183812 83183812 C T DLG2 Missense_Mutation p.E768K 0.21 deleterious(0) probably_damaging(0.99) TCGA-3N-A9WD-06 11 83252867 83252867 C A DLG2 Missense_Mutation p.G659W 0.19 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 11 84027947 84027947 G A DLG2 Intron 0.19 TCGA-3N-A9WD-06 11 85630586 85630586 C T CCDC83 3'UTR 0.42 TCGA-3N-A9WD-06 11 89413774 89413774 C T FOLH1B Intron 0.13 TCGA-3N-A9WD-06 11 94113452 94113452 G A GPR83 Missense_Mutation p.P379S 0.17 tolerated(0.05) benign(0.061) TCGA-3N-A9WD-06 11 94583348 94583348 A G AMOTL1 Missense_Mutation p.D573G 0.45 deleterious(0) benign(0.293) TCGA-3N-A9WD-06 12 100606116 100606116 G A ACTR6 Missense_Mutation p.D219N 0.30 deleterious(0.01) possibly_damaging(0.888) TCGA-3N-A9WD-06 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.24 tolerated(0.24) possibly_damaging(0.761) TCGA-3N-A9WD-06 12 104089587 104089587 G A STAB2 Missense_Mutation p.E1183K 0.16 tolerated(0.11) benign(0.01) TCGA-3N-A9WD-06 12 108641955 108641955 G A WSCD2 Silent p.E511E 0.16 TCGA-3N-A9WD-06 12 10961877 10961877 A C TAS2R9 Missense_Mutation p.I266M 0.15 deleterious(0.02) possibly_damaging(0.697) TCGA-3N-A9WD-06 12 10962409 10962409 C T TAS2R9 Nonsense_Mutation p.W89* 0.11 TCGA-3N-A9WD-06 12 111321904 111321904 C T CCDC63 Silent p.L308L 0.27 TCGA-3N-A9WD-06 12 113354437 113354437 G A OAS1 Missense_Mutation p.E260K 0.25 tolerated(0.09) benign(0.042) TCGA-3N-A9WD-06 12 116446848 116446848 G A MED13L Missense_Mutation p.S457L 0.19 tolerated(0.13) unknown(0) TCGA-3N-A9WD-06 12 117681134 117681134 G A NOS1 Missense_Mutation p.T1011I 0.33 tolerated(0.08) benign(0.284) TCGA-3N-A9WD-06 12 117962701 117962701 G A KSR2 Silent p.F725F 0.30 TCGA-3N-A9WD-06 12 123187032 123187032 C T HCAR2 Missense_Mutation p.E267K 0.18 tolerated(0.89) benign(0.001) TCGA-3N-A9WD-06 12 124358157 124358157 G A DNAH10 Missense_Mutation p.R2495K 0.21 benign(0.304) TCGA-3N-A9WD-06 12 126138488 126138488 C T TMEM132B Silent p.N823N 0.17 TCGA-3N-A9WD-06 12 126138489 126138489 C T TMEM132B Nonsense_Mutation p.Q824* 0.17 TCGA-3N-A9WD-06 12 126138623 126138623 C T TMEM132B Silent p.A868A 0.23 TCGA-3N-A9WD-06 12 126138999 126138999 C T TMEM132B Missense_Mutation p.H994Y 0.43 tolerated(0.3) benign(0.039) TCGA-3N-A9WD-06 12 13526349 13526349 G A C12orf36 Missense_Mutation p.S69L 0.18 possibly_damaging(0.519) TCGA-3N-A9WD-06 12 18241876 18241876 A G RERGL Missense_Mutation p.F24L 0.20 tolerated(0.08) probably_damaging(0.992) TCGA-3N-A9WD-06 12 21968749 21968749 T A ABCC9 Missense_Mutation p.N1324I 0.25 tolerated(0.13) benign(0.089) TCGA-3N-A9WD-06 12 22012591 22012591 G A ABCC9 Silent p.L812L 0.20 TCGA-3N-A9WD-06 12 2786393 2786393 G A CACNA1C Intron 0.20 TCGA-3N-A9WD-06 12 31249612 31249612 C T DDX11 Silent p.S521S 0.16 TCGA-3N-A9WD-06 12 32134473 32134473 T C KIAA1551 Missense_Mutation p.V195A 0.23 tolerated(0.18) benign(0.046) TCGA-3N-A9WD-06 12 45409957 45409957 C T DBX2 3'UTR 0.27 TCGA-3N-A9WD-06 12 4735748 4735748 G A AKAP3 Nonsense_Mutation p.Q774* 0.19 TCGA-3N-A9WD-06 12 48884601 48884601 G A C12orf54 Missense_Mutation p.E59K 0.21 deleterious(0.04) benign(0.182) TCGA-3N-A9WD-06 12 52946521 52946521 G A KRT71 Missense_Mutation p.P114L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WD-06 12 53039197 53039197 G A KRT2 Missense_Mutation p.S509L 0.09 deleterious(0.01) unknown(0) TCGA-3N-A9WD-06 12 53216896 53216896 C T KRT79 Missense_Mutation p.R424Q 0.21 deleterious(0.04) possibly_damaging(0.822) TCGA-3N-A9WD-06 12 56532798 56532798 G A ESYT1 Splice_Site p.X874_splice 0.36 TCGA-3N-A9WD-06 12 56743905 56743905 A G STAT2 Silent p.G395G 0.26 TCGA-3N-A9WD-06 12 59270338 59270338 C T LRIG3 Missense_Mutation p.G862R 0.17 deleterious(0) probably_damaging(0.96) TCGA-3N-A9WD-06 12 64199106 64199106 A T TMEM5 Missense_Mutation p.N279I 0.21 deleterious(0) probably_damaging(0.988) TCGA-3N-A9WD-06 12 6472857 6472857 C T SCNN1A Missense_Mutation p.E205K 0.09 tolerated(0.23) benign(0.026) TCGA-3N-A9WD-06 12 6619695 6619695 A T NCAPD2 Intron 0.16 TCGA-3N-A9WD-06 12 66531777 66531777 T C TMBIM4 Missense_Mutation p.H227R 0.33 tolerated(0.07) benign(0.292) TCGA-3N-A9WD-06 12 6730139 6730139 G A LPAR5 Silent p.L92L 0.21 TCGA-3N-A9WD-06 12 70938397 70938397 C A PTPRB Nonsense_Mutation p.E1812* 0.22 TCGA-3N-A9WD-06 12 7521977 7521977 C T CD163L1 Missense_Mutation p.E1339K 0.26 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 12 7559203 7559203 G A CD163L1 Missense_Mutation p.L338F 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-3N-A9WD-06 12 7636138 7636138 G A CD163 Silent p.G971G 0.16 TCGA-3N-A9WD-06 12 7640255 7640255 G A CD163 Missense_Mutation p.R584C 0.30 deleterious(0) probably_damaging(0.991) TCGA-3N-A9WD-06 12 7649652 7649652 C T CD163 Missense_Mutation p.E286K 0.11 tolerated(0.23) possibly_damaging(0.734) TCGA-3N-A9WD-06 12 7842579 7842579 G A GDF3 Silent p.I330I 0.29 TCGA-3N-A9WD-06 12 88381713 88381713 G A C12orf50 Missense_Mutation p.S244F 0.34 tolerated(0.18) possibly_damaging(0.812) TCGA-3N-A9WD-06 12 9021797 9021797 G A A2ML1 Missense_Mutation p.E1407K 0.22 tolerated(0.47) benign(0.393) TCGA-3N-A9WD-06 12 91502199 91502199 G A LUM Silent p.L186L 0.26 TCGA-3N-A9WD-06 12 9321564 9321564 C T PZP Missense_Mutation p.G670R 0.25 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 12 98940193 98940193 C T TMPO Silent p.F240F 0.10 TCGA-3N-A9WD-06 13 101797206 101797206 G A NALCN Silent p.L627L 0.17 TCGA-3N-A9WD-06 13 109365025 109365025 G A MYO16 Silent p.K81K 0.10 TCGA-3N-A9WD-06 13 110845261 110845261 C T COL4A1 Splice_Site p.X461_splice 0.32 TCGA-3N-A9WD-06 13 111156283 111156283 C T COL4A2 Nonsense_Mutation p.R1410* 0.19 TCGA-3N-A9WD-06 13 113556661 113556661 C T MCF2L Missense_Mutation p.P49S 0.15 tolerated_low_confidence(0.18) benign(0.01) TCGA-3N-A9WD-06 13 23904575 23904575 A G SACS Silent p.S4480S 0.18 TCGA-3N-A9WD-06 13 24893016 24893016 G A C1QTNF9 Missense_Mutation p.R76Q 0.17 tolerated(0.18) benign(0.007) TCGA-3N-A9WD-06 13 24893017 24893017 A T C1QTNF9 Silent p.R76R 0.17 TCGA-3N-A9WD-06 13 25482223 25482223 G A CENPJ Nonsense_Mutation p.Q303* 0.13 TCGA-3N-A9WD-06 13 25743840 25743840 G A AMER2 Missense_Mutation p.P640S 0.38 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 13 28896930 28896930 C T FLT1 Missense_Mutation p.E984K 0.13 tolerated(0.09) possibly_damaging(0.869) TCGA-3N-A9WD-06 13 30829640 30829640 C A KATNAL1 Nonsense_Mutation p.E146* 0.32 TCGA-3N-A9WD-06 13 31722601 31722601 G A HSPH1 Missense_Mutation p.P385L 0.32 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 13 33629371 33629371 C T KL Silent p.F506F 0.43 TCGA-3N-A9WD-06 13 36049090 36049090 G A MAB21L1 3'UTR 0.49 TCGA-3N-A9WD-06 13 39420832 39420832 C T FREM2 Missense_Mutation p.R2048W 0.30 deleterious(0) possibly_damaging(0.904) TCGA-3N-A9WD-06 13 43935536 43935536 G A ENOX1 Silent p.I87I 0.12 TCGA-3N-A9WD-06 13 46287409 46287409 G A SPERT Silent p.R83R 0.16 TCGA-3N-A9WD-06 13 76123960 76123960 G A UCHL3 Missense_Mutation p.E2K 0.21 tolerated(0.34) benign(0.057) TCGA-3N-A9WD-06 13 84455345 84455345 C T SLITRK1 Missense_Mutation p.G100R 0.13 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 13 84455346 84455346 C T SLITRK1 Silent p.P99P 0.13 TCGA-3N-A9WD-06 13 92345984 92345984 C T GPC5 Missense_Mutation p.P290L 0.11 tolerated(0.69) benign(0.008) TCGA-3N-A9WD-06 13 92346046 92346046 G A GPC5 Missense_Mutation p.D311N 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-3N-A9WD-06 13 93879659 93879659 G A GPC6 5'UTR 0.29 TCGA-3N-A9WD-06 13 97484834 97484834 C T HS6ST3 Silent p.T266T 0.39 TCGA-3N-A9WD-06 13 99534199 99534199 C A DOCK9 Silent p.L874L 0.36 TCGA-3N-A9WD-06 14 101429463 101429463 T C SNORD114-7 RNA 0.31 TCGA-3N-A9WD-06 14 101496016 101496016 G A MIR494 RNA 0.20 TCGA-3N-A9WD-06 14 102675144 102675144 C T WDR20 Missense_Mutation p.L244F 0.16 deleterious(0) probably_damaging(0.98) TCGA-3N-A9WD-06 14 105833616 105833616 G T PACS2 Missense_Mutation p.V164F 0.33 tolerated(0.11) benign(0.269) TCGA-3N-A9WD-06 14 106321801 106321801 G A IGHM Nonsense_Mutation p.Q145* 0.23 TCGA-3N-A9WD-06 14 106691817 106691817 G A IGHV3-21 Silent p.S69S 0.12 TCGA-3N-A9WD-06 14 106963364 106963364 C T IGHV1-45 Translation_Start_Site p.M1? 0.16 deleterious(0.01) possibly_damaging(0.662) TCGA-3N-A9WD-06 14 107034831 107034831 G A IGHV5-51 Silent p.F83F 0.22 TCGA-3N-A9WD-06 14 107078605 107078605 G A IGHV1-58 Missense_Mutation p.S40F 0.21 probably_damaging(0.973) TCGA-3N-A9WD-06 14 107113784 107113784 C T IGHV3-64 Missense_Mutation p.G104D 0.16 tolerated_low_confidence(0.06) benign(0.001) TCGA-3N-A9WD-06 14 107211182 107211182 G A IGHV3-73 Missense_Mutation p.S36F 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-3N-A9WD-06 14 19553780 19553780 G A POTEG Missense_Mutation p.D122N 0.06 tolerated(0.05) benign(0.067) TCGA-3N-A9WD-06 14 20216336 20216336 G A OR4Q3 Silent p.L250L 0.14 TCGA-3N-A9WD-06 14 20344762 20344762 C T OR4K2 Silent p.I112I 0.18 TCGA-3N-A9WD-06 14 20403871 20403871 G A OR4K1 Missense_Mutation p.G16R 0.17 deleterious(0) possibly_damaging(0.703) TCGA-3N-A9WD-06 14 20444394 20444394 T C OR4K15 Silent p.V239V 0.23 TCGA-3N-A9WD-06 14 20585615 20585615 T A OR4K17 Missense_Mutation p.F17Y 0.22 tolerated_low_confidence(0.13) benign(0.013) TCGA-3N-A9WD-06 14 21794234 21794234 C T RPGRIP1 Missense_Mutation p.S871F 0.17 tolerated(0.15) possibly_damaging(0.59) TCGA-3N-A9WD-06 14 21831191 21831191 A C SUPT16H Splice_Site p.X504_splice 0.32 TCGA-3N-A9WD-06 14 21992768 21992768 G A SALL2 Missense_Mutation p.P365L 0.16 tolerated(0.23) benign(0.193) TCGA-3N-A9WD-06 14 22356642 22356642 C T TRAV12-2 Silent p.S100S 0.19 TCGA-3N-A9WD-06 14 22386452 22386452 T C TRAV13-2 Missense_Mutation p.L7S 0.27 tolerated(0.14) benign(0.008) TCGA-3N-A9WD-06 14 23393554 23393554 G A PRMT5 Missense_Mutation p.S375F 0.19 deleterious(0) probably_damaging(0.953) TCGA-3N-A9WD-06 14 23746337 23746337 G A HOMEZ Missense_Mutation p.L34F 0.18 tolerated(0.74) benign(0.004) TCGA-3N-A9WD-06 14 23857548 23857548 C T MYH6 Splice_Site p.X1392_splice 0.39 TCGA-3N-A9WD-06 14 23862709 23862709 C T MYH6 Missense_Mutation p.E983K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-3N-A9WD-06 14 23874459 23874459 C T MYH6 Missense_Mutation p.D159N 0.20 deleterious(0.05) probably_damaging(0.91) TCGA-3N-A9WD-06 14 23884605 23884605 C T MYH7 Silent p.K1756K 0.24 TCGA-3N-A9WD-06 14 24976609 24976609 G A CMA1 Silent p.F54F 0.18 TCGA-3N-A9WD-06 14 36230131 36230131 A G RALGAPA1 Missense_Mutation p.F151L 0.20 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WD-06 14 37153085 37153085 C T SLC25A21 Silent p.G262G 0.19 TCGA-3N-A9WD-06 14 52520399 52520399 C T NID2 Missense_Mutation p.E443K 0.34 tolerated(0.47) benign(0.006) TCGA-3N-A9WD-06 14 57684728 57684728 C A EXOC5 Nonsense_Mutation p.E529* 0.19 TCGA-3N-A9WD-06 14 60212675 60212675 C T RTN1 Missense_Mutation p.E256K 0.16 deleterious(0.03) possibly_damaging(0.587) TCGA-3N-A9WD-06 14 61201523 61201523 T C MNAT1 5'UTR 0.17 TCGA-3N-A9WD-06 14 64727325 64727325 G A ESR2 Missense_Mutation p.P265L 0.24 deleterious(0) benign(0.03) TCGA-3N-A9WD-06 14 64735520 64735520 C T ESR2 Silent p.V215V 0.38 TCGA-3N-A9WD-06 14 70633824 70633824 G A SLC8A3 Missense_Mutation p.S439F 0.15 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WD-06 14 70634712 70634712 G A SLC8A3 Missense_Mutation p.S143F 0.16 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 14 71137919 71137919 C T TTC9 3'UTR 0.37 TCGA-3N-A9WD-06 14 72128143 72128143 C T SIPA1L1 Silent p.I738I 0.07 TCGA-3N-A9WD-06 14 72172038 72172038 C T SIPA1L1 Missense_Mutation p.S1270F 0.23 deleterious(0) possibly_damaging(0.564) TCGA-3N-A9WD-06 14 72939610 72939610 G A RGS6 Silent p.R189R 0.23 TCGA-3N-A9WD-06 14 80130129 80130129 G A NRXN3 Silent p.G778G 0.13 TCGA-3N-A9WD-06 14 81209431 81209431 G A CEP128 Missense_Mutation p.R932C 0.15 deleterious(0) possibly_damaging(0.707) TCGA-3N-A9WD-06 14 86088168 86088168 C T FLRT2 Missense_Mutation p.P104S 0.15 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 14 91252634 91252634 C T TTC7B Missense_Mutation p.E54K 0.24 deleterious(0) benign(0.116) TCGA-3N-A9WD-06 14 91626672 91626672 C T C14orf159 Missense_Mutation p.P12S 0.20 deleterious(0.05) possibly_damaging(0.49) TCGA-3N-A9WD-06 14 91739846 91739846 G C CCDC88C Missense_Mutation p.A1737G 0.35 tolerated(0.43) benign(0.001) TCGA-3N-A9WD-06 14 92102822 92102822 C T CATSPERB Silent p.T563T 0.17 TCGA-3N-A9WD-06 14 93118266 93118266 C T RIN3 Missense_Mutation p.P291L 0.17 tolerated(0.16) unknown(0) TCGA-3N-A9WD-06 14 95682025 95682025 G A CLMN Missense_Mutation p.P124S 0.24 tolerated(0.38) possibly_damaging(0.874) TCGA-3N-A9WD-06 14 96178597 96178597 G A TCL1A Missense_Mutation p.S86F 0.20 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WD-06 15 22382647 22382647 C T OR4N4 Missense_Mutation p.L59F 0.21 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 15 22866717 22866717 C T TUBGCP5 Silent p.L777L 0.32 TCGA-3N-A9WD-06 15 25425572 25425572 C T SNORD115-6 5'Flank 0.36 TCGA-3N-A9WD-06 15 28493707 28493707 C T HERC2 Missense_Mutation p.D1076N 0.20 benign(0) TCGA-3N-A9WD-06 15 35529683 35529683 G A ANP32AP1 RNA 0.27 TCGA-3N-A9WD-06 15 41476188 41476188 G A EXD1 Missense_Mutation p.P496S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-3N-A9WD-06 15 42028814 42028814 C T MGA Missense_Mutation p.P1451L 0.35 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 15 42113839 42113839 C T MAPKBP1 Nonsense_Mutation p.R932* 0.21 TCGA-3N-A9WD-06 15 43815811 43815811 G A MAP1A Missense_Mutation p.E714K 0.20 probably_damaging(0.997) TCGA-3N-A9WD-06 15 51696570 51696570 C T GLDN Silent p.F425F 0.29 TCGA-3N-A9WD-06 15 54307072 54307072 A G UNC13C Missense_Mutation p.K658E 0.29 deleterious_low_confidence(0) benign(0.242) TCGA-3N-A9WD-06 15 63433804 63433804 T C LACTB Missense_Mutation p.Y482H 0.14 tolerated(0.08) benign(0.414) TCGA-3N-A9WD-06 15 65627192 65627192 C T IGDCC3 Missense_Mutation p.G233R 0.17 tolerated(0.7) benign(0.002) TCGA-3N-A9WD-06 15 65993487 65993487 T C DENND4A Missense_Mutation p.Y868C 0.28 tolerated(0.08) benign(0.001) TCGA-3N-A9WD-06 15 69011111 69011111 G A CORO2B Missense_Mutation p.G348S 0.16 tolerated(0.52) benign(0.052) TCGA-3N-A9WD-06 15 76673848 76673848 G A SCAPER Silent p.F1192F 0.30 TCGA-3N-A9WD-06 15 83218397 83218397 G A CPEB1 Silent p.I404I 0.25 TCGA-3N-A9WD-06 15 89414632 89414632 G A ACAN Silent p.E2322E 0.34 TCGA-3N-A9WD-06 15 90278737 90278737 G A WDR93 Missense_Mutation p.D521N 0.25 tolerated(0.71) benign(0.024) TCGA-3N-A9WD-06 16 11217756 11217756 C T CLEC16A Missense_Mutation p.A809V 0.18 tolerated(0.12) benign(0.014) TCGA-3N-A9WD-06 16 11217757 11217757 C T CLEC16A Silent p.A809A 0.19 TCGA-3N-A9WD-06 16 1144818 1144818 G A C1QTNF8 Silent p.P35P 0.23 TCGA-3N-A9WD-06 16 15818755 15818755 T A MYH11 Missense_Mutation p.Q1325L 0.30 possibly_damaging(0.848) TCGA-3N-A9WD-06 16 16278829 16278829 G A ABCC6 Missense_Mutation p.P644S 0.15 deleterious(0.04) benign(0.007) TCGA-3N-A9WD-06 16 16295909 16295909 C A ABCC6 Missense_Mutation p.K375N 0.11 deleterious(0.02) benign(0.026) TCGA-3N-A9WD-06 16 19027917 19027917 G A TMC7 Missense_Mutation p.E153K 0.33 deleterious(0.02) possibly_damaging(0.877) TCGA-3N-A9WD-06 16 20439182 20439182 C T ACSM5 Silent p.L332L 0.15 TCGA-3N-A9WD-06 16 20494415 20494415 C T ACSM2A Silent p.F515F 0.21 TCGA-3N-A9WD-06 16 20554308 20554308 C T ACSM2B Silent p.E479E 0.14 TCGA-3N-A9WD-06 16 20873860 20873860 T A DCUN1D3 Translation_Start_Site p.M1? 0.21 deleterious(0) probably_damaging(0.924) TCGA-3N-A9WD-06 16 20944518 20944518 C T DNAH3 Nonsense_Mutation p.W4103* 0.17 TCGA-3N-A9WD-06 16 20974637 20974637 A C DNAH3 Missense_Mutation p.F3523L 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 16 21069510 21069510 C T DNAH3 Missense_Mutation p.R1274Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WD-06 16 21261292 21261292 G A ANKS4B Silent p.L135L 0.26 TCGA-3N-A9WD-06 16 23716414 23716414 C T ERN2 Missense_Mutation p.G263E 0.10 tolerated(1) benign(0.008) TCGA-3N-A9WD-06 16 24135269 24135269 C T PRKCB Silent p.F344F 0.21 TCGA-3N-A9WD-06 16 27363925 27363925 C T IL4R Missense_Mutation p.S193F 0.24 deleterious(0) benign(0.396) TCGA-3N-A9WD-06 16 27499710 27499710 C T GTF3C1 Missense_Mutation p.E1180K 0.17 tolerated(0.15) benign(0.035) TCGA-3N-A9WD-06 16 30081205 30081205 A G ALDOA Missense_Mutation p.N339S 0.17 tolerated(0.07) benign(0.079) TCGA-3N-A9WD-06 16 31121762 31121762 C T BCKDK Missense_Mutation p.T195I 0.27 deleterious(0.01) probably_damaging(0.91) TCGA-3N-A9WD-06 16 31471192 31471192 C T ARMC5 Missense_Mutation p.S116L 0.17 tolerated_low_confidence(0.22) unknown(0) TCGA-3N-A9WD-06 16 3487167 3487167 G A ZNF597 Missense_Mutation p.H178Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 16 5056032 5056032 C T SEC14L5 Missense_Mutation p.L474F 0.17 deleterious(0.04) possibly_damaging(0.708) TCGA-3N-A9WD-06 16 50810162 50810162 C T CYLD Missense_Mutation p.S332F 0.23 tolerated(0.15) benign(0.001) TCGA-3N-A9WD-06 16 57060398 57060398 C T NLRC5 Missense_Mutation p.L515F 0.23 tolerated(0.13) benign(0.04) TCGA-3N-A9WD-06 16 65025818 65025818 G A CDH11 Missense_Mutation p.P222S 0.21 tolerated(0.43) possibly_damaging(0.737) TCGA-3N-A9WD-06 16 66948290 66948290 C T CDH16 Silent p.L203L 0.33 TCGA-3N-A9WD-06 16 67329305 67329305 G A KCTD19 Missense_Mutation p.P418S 0.24 deleterious(0.01) probably_damaging(0.948) TCGA-3N-A9WD-06 16 69170661 69170661 C T CIRH1A Silent p.L74L 0.19 TCGA-3N-A9WD-06 16 69375585 69375585 T C NIP7 3'UTR 0.15 TCGA-3N-A9WD-06 16 70499041 70499041 G A FUK Missense_Mutation p.D83N 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-3N-A9WD-06 16 70841875 70841875 C T HYDIN Missense_Mutation p.E4992K 0.25 possibly_damaging(0.81) TCGA-3N-A9WD-06 16 70902477 70902477 C T HYDIN Missense_Mutation p.R3769Q 0.20 possibly_damaging(0.776) TCGA-3N-A9WD-06 16 70917976 70917976 G A HYDIN Missense_Mutation p.P3276S 0.27 probably_damaging(0.932) TCGA-3N-A9WD-06 16 70995904 70995904 C T HYDIN Missense_Mutation p.E1976K 0.21 probably_damaging(0.953) TCGA-3N-A9WD-06 16 71411581 71411581 C T CALB2 Silent p.I91I 0.20 TCGA-3N-A9WD-06 16 7568238 7568238 G A RBFOX1 Silent p.A59A 0.24 TCGA-3N-A9WD-06 16 7703908 7703908 C T RBFOX1 Silent p.F303F 0.26 TCGA-3N-A9WD-06 16 77353943 77353943 T A ADAMTS18 Missense_Mutation p.I779F 0.21 tolerated(0.07) benign(0.261) TCGA-3N-A9WD-06 16 80583530 80583530 G A DYNLRB2 Missense_Mutation p.E77K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WD-06 16 81324026 81324026 C T BCMO1 Silent p.S496S 0.33 TCGA-3N-A9WD-06 16 815110 815110 G A MSLN Missense_Mutation p.G171S 0.17 deleterious(0.03) probably_damaging(0.99) TCGA-3N-A9WD-06 16 83378569 83378569 G A CDH13 Missense_Mutation p.E294K 0.15 tolerated(0.28) possibly_damaging(0.794) TCGA-3N-A9WD-06 16 83704507 83704507 G A CDH13 Missense_Mutation p.G452E 0.12 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 16 86612429 86612429 C T FOXL1 Missense_Mutation p.P34S 0.16 tolerated(0.14) possibly_damaging(0.716) TCGA-3N-A9WD-06 16 89704618 89704618 G A DPEP1 Silent p.L408L 0.31 TCGA-3N-A9WD-06 16 90001275 90001276 - G TUBB3 Frame_Shift_Ins p.G142Rfs*16 0.25 TCGA-3N-A9WD-06 16 90028531 90028531 C T DEF8 Missense_Mutation p.R368C 0.26 tolerated(0.06) benign(0.12) TCGA-3N-A9WD-06 16 9858200 9858200 C T GRIN2A Silent p.R1067R 0.20 TCGA-3N-A9WD-06 16 9858247 9858247 G A GRIN2A Missense_Mutation p.L1052F 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-3N-A9WD-06 16 9934568 9934568 C T GRIN2A Silent p.V529V 0.17 TCGA-3N-A9WD-06 17 10398588 10398588 G A MYH1 Missense_Mutation p.S1739F 0.23 deleterious(0.04) possibly_damaging(0.466) TCGA-3N-A9WD-06 17 12666834 12666834 C T MYOCD Missense_Mutation p.P945L 0.11 deleterious(0.04) probably_damaging(1) TCGA-3N-A9WD-06 17 15971320 15971320 G A NCOR1 Silent p.S1543S 0.15 TCGA-3N-A9WD-06 17 17699147 17699147 C T RAI1 Missense_Mutation p.P962L 0.22 tolerated(0.62) benign(0.004) TCGA-3N-A9WD-06 17 17891274 17891274 C T LRRC48 Silent p.I102I 0.24 TCGA-3N-A9WD-06 17 18010489 18010489 C T DRG2 Missense_Mutation p.P344S 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-3N-A9WD-06 17 26874714 26874714 G A UNC119 Silent p.P197P 0.22 TCGA-3N-A9WD-06 17 3181759 3181759 G A OR3A2 Silent p.S157S 0.24 TCGA-3N-A9WD-06 17 33456557 33456557 C T FNDC8 Silent p.I234I 0.29 TCGA-3N-A9WD-06 17 33513485 33513485 G A UNC45B Silent p.Q901Q 0.28 TCGA-3N-A9WD-06 17 39023145 39023145 C T KRT12 Silent p.G98G 0.26 TCGA-3N-A9WD-06 17 41003258 41003258 G A AOC3 5'UTR 0.52 TCGA-3N-A9WD-06 17 42152399 42152399 C T G6PC3 Missense_Mutation p.S160L 0.31 deleterious(0) probably_damaging(0.97) TCGA-3N-A9WD-06 17 43481447 43481447 T G ARHGAP27 Missense_Mutation p.K158Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 17 45487024 45487024 G A EFCAB13 Missense_Mutation p.E749K 0.36 tolerated(0.21) benign(0.046) TCGA-3N-A9WD-06 17 45993865 45993865 C G SP2 Missense_Mutation p.S143C 0.21 deleterious(0.01) benign(0.299) TCGA-3N-A9WD-06 17 46423368 46423368 C T SKAP1 Missense_Mutation p.G60E 0.24 tolerated(0.16) benign(0.17) TCGA-3N-A9WD-06 17 48191333 48191333 C T SAMD14 Silent p.Q379Q 0.16 TCGA-3N-A9WD-06 17 48264251 48264251 G A COL1A1 Silent p.P1188P 0.24 TCGA-3N-A9WD-06 17 50008440 50008440 C T CA10 Silent p.G63G 0.37 TCGA-3N-A9WD-06 17 50235256 50235256 C T CA10 5'UTR 0.21 TCGA-3N-A9WD-06 17 5038558 5038558 C T USP6 Missense_Mutation p.A175V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-3N-A9WD-06 17 5434020 5434020 G A NLRP1 Missense_Mutation p.H1101Y 0.30 deleterious(0) probably_damaging(0.979) TCGA-3N-A9WD-06 17 54526478 54526478 G A ANKFN1 Missense_Mutation p.G383R 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-3N-A9WD-06 17 56620244 56620244 A G C17orf47 Missense_Mutation p.V435A 0.16 tolerated(0.25) possibly_damaging(0.728) TCGA-3N-A9WD-06 17 58234034 58234034 G A CA4 Missense_Mutation p.D76N 0.26 tolerated(0.21) benign(0.406) TCGA-3N-A9WD-06 17 62018698 62018698 C T SCN4A Silent p.Q1648Q 0.38 TCGA-3N-A9WD-06 17 66871838 66871838 C T ABCA8 Silent p.R1429R 0.24 TCGA-3N-A9WD-06 17 67178383 67178383 G A ABCA10 Missense_Mutation p.P894S 0.23 deleterious(0) probably_damaging(0.989) TCGA-3N-A9WD-06 17 685544 685544 G A GLOD4 5'UTR 0.37 TCGA-3N-A9WD-06 17 6979055 6979055 C T CLEC10A Missense_Mutation p.E224K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-3N-A9WD-06 17 70119795 70119795 C T SOX9 Missense_Mutation p.P266L 0.34 tolerated(0.34) possibly_damaging(0.451) TCGA-3N-A9WD-06 17 7134068 7134068 G A DVL2 Silent p.F81F 0.33 TCGA-3N-A9WD-06 17 73739862 73739862 C T ITGB4 Missense_Mutation p.P1011S 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-3N-A9WD-06 17 74901259 74901259 C T MGAT5B Silent p.F244F 0.37 TCGA-3N-A9WD-06 17 7578509 7578509 A C TP53 Missense_Mutation p.C141G 0.31 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WD-06 18 10671621 10671621 C T PIEZO2 Missense_Mutation p.G2721E 0.23 deleterious(0.01) probably_damaging(0.913) TCGA-3N-A9WD-06 18 14105932 14105932 G A ZNF519 Missense_Mutation p.H203Y 0.37 deleterious(0.04) benign(0.387) TCGA-3N-A9WD-06 18 14183997 14183997 G A ANKRD20A5P RNA 0.25 TCGA-3N-A9WD-06 18 19996923 19996923 C T CTAGE1 Silent p.K284K 0.15 TCGA-3N-A9WD-06 18 21500993 21500993 C T LAMA3 Missense_Mutation p.A2673V 0.17 benign(0.001) TCGA-3N-A9WD-06 18 21533021 21533021 C T LAMA3 Silent p.I3268I 0.12 TCGA-3N-A9WD-06 18 21746655 21746655 A - OSBPL1A Frame_Shift_Del p.F849Lfs*8 0.21 TCGA-3N-A9WD-06 18 22057305 22057305 C T HRH4 Missense_Mutation p.P318S 0.23 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 18 28604330 28604330 C T DSC3 Missense_Mutation p.E254K 0.15 deleterious(0.04) probably_damaging(0.949) TCGA-3N-A9WD-06 18 28667704 28667704 C T DSC2 Missense_Mutation p.D235N 0.27 deleterious(0) probably_damaging(0.968) TCGA-3N-A9WD-06 18 28914104 28914104 G A DSG1 Missense_Mutation p.G315E 0.16 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 18 28934695 28934695 A T DSG1 Missense_Mutation p.T846S 0.21 tolerated(0.83) benign(0.021) TCGA-3N-A9WD-06 18 28934696 28934696 C T DSG1 Missense_Mutation p.T846I 0.21 deleterious(0.02) benign(0.03) TCGA-3N-A9WD-06 18 29126783 29126783 C T DSG2 3'UTR 0.16 TCGA-3N-A9WD-06 18 29178610 29178610 C A TTR Missense_Mutation p.T139K 0.13 deleterious(0) probably_damaging(0.963) TCGA-3N-A9WD-06 18 30093744 30093744 G A WBP11P1 RNA 0.31 TCGA-3N-A9WD-06 18 31324985 31324985 G A ASXL3 Missense_Mutation p.D1725N 0.18 possibly_damaging(0.856) TCGA-3N-A9WD-06 18 33289634 33289634 C T GALNT1 Missense_Mutation p.A527V 0.12 deleterious(0.05) benign(0.053) TCGA-3N-A9WD-06 18 43445694 43445694 G A EPG5 Missense_Mutation p.H2218Y 0.23 tolerated(0.05) benign(0.133) TCGA-3N-A9WD-06 18 44559764 44559764 C T TCEB3B Silent p.T624T 0.15 TCGA-3N-A9WD-06 18 50683792 50683792 G A DCC Missense_Mutation p.R443Q 0.11 deleterious(0) probably_damaging(0.95) TCGA-3N-A9WD-06 18 50937016 50937016 G A DCC Missense_Mutation p.V1044M 0.19 deleterious(0.04) benign(0.037) TCGA-3N-A9WD-06 18 52921815 52921815 G A TCF4 Silent p.I523I 0.18 TCGA-3N-A9WD-06 18 52921855 52921855 G A TCF4 Missense_Mutation p.S510F 0.31 deleterious(0) possibly_damaging(0.707) TCGA-3N-A9WD-06 18 5478383 5478383 G A EPB41L3 Nonsense_Mutation p.Q80* 0.26 TCGA-3N-A9WD-06 18 55143802 55143802 G A ONECUT2 Silent p.E454E 0.22 TCGA-3N-A9WD-06 18 61305069 61305069 C T SERPINB4 Missense_Mutation p.E353K 0.18 tolerated(0.93) benign(0.006) TCGA-3N-A9WD-06 18 61322789 61322789 G C SERPINB3 3'UTR 0.30 TCGA-3N-A9WD-06 18 61322864 61322864 C T SERPINB3 3'UTR 0.17 TCGA-3N-A9WD-06 18 61383338 61383338 G A SERPINB11 Missense_Mutation p.E143K 0.32 deleterious(0) probably_damaging(0.993) TCGA-3N-A9WD-06 18 61570706 61570706 C T SERPINB2 3'UTR 0.33 TCGA-3N-A9WD-06 18 67231769 67231769 G A DOK6 Missense_Mutation p.G38E 0.10 deleterious(0) probably_damaging(0.949) TCGA-3N-A9WD-06 18 67531618 67531618 C T CD226 Missense_Mutation p.D315N 0.18 tolerated(0.08) benign(0.237) TCGA-3N-A9WD-06 18 67614066 67614066 G A CD226 Missense_Mutation p.R96W 0.16 tolerated(0.17) possibly_damaging(0.759) TCGA-3N-A9WD-06 18 67759396 67759396 G C RTTN Missense_Mutation p.Q1365E 0.30 tolerated(0.1) benign(0.229) TCGA-3N-A9WD-06 18 9887317 9887317 G A TXNDC2 Missense_Mutation p.E281K 0.20 tolerated(0.13) unknown(0) TCGA-3N-A9WD-06 19 10158064 10158064 C T C3P1 RNA 0.27 TCGA-3N-A9WD-06 19 10369515 10369515 C T MRPL4 Intron 0.27 TCGA-3N-A9WD-06 19 10624628 10624628 G A S1PR5 Missense_Mutation p.P354S 0.36 tolerated(0.09) benign(0.007) TCGA-3N-A9WD-06 19 10946778 10946778 C T TMED1 Silent p.Q30Q 0.31 TCGA-3N-A9WD-06 19 11352758 11352758 G A DOCK6 Missense_Mutation p.P536S 0.25 deleterious(0) possibly_damaging(0.805) TCGA-3N-A9WD-06 19 11408851 11408851 G A TSPAN16 Missense_Mutation p.G35S 0.14 tolerated(0.38) benign(0.03) TCGA-3N-A9WD-06 19 12090399 12090399 C T ZNF763 3'UTR 0.24 TCGA-3N-A9WD-06 19 12878264 12878264 G A HOOK2 Missense_Mutation p.P440S 0.46 tolerated(0.83) benign(0.001) TCGA-3N-A9WD-06 19 1430237 1430237 C T DAZAP1 Silent p.P249P 0.29 TCGA-3N-A9WD-06 19 1430238 1430238 C T DAZAP1 Missense_Mutation p.P250S 0.33 tolerated(0.22) unknown(0) TCGA-3N-A9WD-06 19 15839542 15839542 C T OR10H2 Missense_Mutation p.P230L 0.21 deleterious(0) probably_damaging(0.956) TCGA-3N-A9WD-06 19 15853072 15853072 C T OR10H3 Silent p.I290I 0.13 TCGA-3N-A9WD-06 19 16643425 16643425 C T CHERP Missense_Mutation p.D220N 0.31 deleterious(0) benign(0.393) TCGA-3N-A9WD-06 19 16875863 16875863 C T NWD1 Missense_Mutation p.S757F 0.22 tolerated(0.38) benign(0.124) TCGA-3N-A9WD-06 19 17000497 17000497 G A F2RL3 Missense_Mutation p.V75M 0.25 deleterious(0) possibly_damaging(0.875) TCGA-3N-A9WD-06 19 17370795 17370795 G A USHBP1 Missense_Mutation p.P227S 0.25 tolerated(0.47) benign(0.01) TCGA-3N-A9WD-06 19 17892335 17892335 C T FCHO1 Silent p.S605S 0.14 TCGA-3N-A9WD-06 19 1969889 1969889 C T CSNK1G2 Silent p.L40L 0.19 TCGA-3N-A9WD-06 19 22154039 22154039 G A ZNF208 Missense_Mutation p.S1266L 0.23 deleterious(0) probably_damaging(0.916) TCGA-3N-A9WD-06 19 22363045 22363045 G A ZNF676 Missense_Mutation p.L492F 0.17 deleterious(0.05) benign(0.126) TCGA-3N-A9WD-06 19 22939845 22939845 G A ZNF99 3'Flank 0.11 TCGA-3N-A9WD-06 19 23329145 23329145 C T ZNF730 Silent p.F433F 0.23 TCGA-3N-A9WD-06 19 23329515 23329515 G A ZNF730 3'UTR 0.19 TCGA-3N-A9WD-06 19 24102109 24102109 T G ZNF726 Intron 0.28 TCGA-3N-A9WD-06 19 32930705 32930705 C T DPY19L3 Silent p.F248F 0.22 TCGA-3N-A9WD-06 19 36211154 36211154 C T KMT2B Missense_Mutation p.P302L 0.21 unknown(0) TCGA-3N-A9WD-06 19 36278571 36278571 C T ARHGAP33 Missense_Mutation p.P874L 0.25 deleterious_low_confidence(0) benign(0.1) TCGA-3N-A9WD-06 19 36278903 36278903 C T ARHGAP33 Missense_Mutation p.P985S 0.26 tolerated_low_confidence(0.31) probably_damaging(0.997) TCGA-3N-A9WD-06 19 36279018 36279018 C T ARHGAP33 Missense_Mutation p.S1023F 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-3N-A9WD-06 19 36341989 36341989 G A NPHS1 Missense_Mutation p.P134S 0.20 tolerated(0.08) benign(0.253) TCGA-3N-A9WD-06 19 3754080 3754080 G A APBA3 Silent p.P262P 0.20 TCGA-3N-A9WD-06 19 37853114 37853114 T A HKR1 Missense_Mutation p.F139L 0.17 tolerated(0.16) benign(0.005) TCGA-3N-A9WD-06 19 3825231 3825231 C T ZFR2 Missense_Mutation p.E404K 0.42 tolerated(0.9) benign(0.002) TCGA-3N-A9WD-06 19 38858696 38858696 G A CATSPERG Missense_Mutation p.S980N 0.28 deleterious(0) benign(0.383) TCGA-3N-A9WD-06 19 38910875 38910875 C T RASGRP4 Silent p.V135V 0.23 TCGA-3N-A9WD-06 19 38939312 38939312 G A RYR1 Silent p.K327K 0.19 TCGA-3N-A9WD-06 19 3978015 3978015 G A EEF2 Silent p.S623S 0.23 TCGA-3N-A9WD-06 19 39804770 39804770 G A LRFN1 Missense_Mutation p.L403F 0.28 tolerated(0.06) possibly_damaging(0.587) TCGA-3N-A9WD-06 19 4024047 4024047 C T PIAS4 Silent p.N156N 0.14 TCGA-3N-A9WD-06 19 40729426 40729426 C T CNTD2 Missense_Mutation p.D181N 0.20 tolerated(0.49) benign(0.412) TCGA-3N-A9WD-06 19 41035023 41035023 C T SPTBN4 Silent p.L1311L 0.23 TCGA-3N-A9WD-06 19 4171734 4171734 G A CREB3L3 Missense_Mutation p.R385Q 0.19 tolerated(0.67) benign(0) TCGA-3N-A9WD-06 19 42085729 42085729 C T CEACAM21 Nonsense_Mutation p.Q150* 0.30 TCGA-3N-A9WD-06 19 42219593 42219593 C T CEACAM5 Missense_Mutation p.S243F 0.25 tolerated(0.25) unknown(0) TCGA-3N-A9WD-06 19 42341255 42341255 C T LYPD4 Missense_Mutation p.G235S 0.21 tolerated(0.37) benign(0.012) TCGA-3N-A9WD-06 19 42930593 42930593 C T LIPE Missense_Mutation p.D237N 0.22 tolerated_low_confidence(0.1) benign(0.003) TCGA-3N-A9WD-06 19 43258511 43258511 G T PSG8 Missense_Mutation p.S406Y 0.27 deleterious(0.01) possibly_damaging(0.864) TCGA-3N-A9WD-06 19 43439849 43439849 G A PSG7 Missense_Mutation p.S46F 0.15 deleterious(0.02) benign(0.018) TCGA-3N-A9WD-06 19 43528910 43528910 G A PSG11 Silent p.T121T 0.22 TCGA-3N-A9WD-06 19 43680036 43680036 G A PSG5 Missense_Mutation p.T232I 0.19 tolerated(0.07) benign(0.17) TCGA-3N-A9WD-06 19 43689217 43689217 C T PSG5 Silent p.K49K 0.22 TCGA-3N-A9WD-06 19 43702212 43702212 C T PSG4 Missense_Mutation p.E216K 0.19 deleterious(0.04) possibly_damaging(0.852) TCGA-3N-A9WD-06 19 45805636 45805636 C T MARK4 Missense_Mutation p.H643Y 0.17 tolerated(0.09) benign(0.009) TCGA-3N-A9WD-06 19 45998149 45998149 G A RTN2 Missense_Mutation p.S65F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3N-A9WD-06 19 46180314 46180314 C T GIPR Silent p.L247L 0.10 TCGA-3N-A9WD-06 19 48511977 48511977 C T ELSPBP1 Missense_Mutation p.S18F 0.24 tolerated(0.75) benign(0.002) TCGA-3N-A9WD-06 19 49540059 49540059 T G CGB1 5'UTR 0.18 TCGA-3N-A9WD-06 19 49979790 49979790 G A FLT3LG Silent p.T103T 0.21 TCGA-3N-A9WD-06 19 50158109 50158109 C T SCAF1 Silent p.G1200G 0.33 TCGA-3N-A9WD-06 19 50251682 50251682 G A TSKS Silent p.T148T 0.21 TCGA-3N-A9WD-06 19 50339561 50339561 C T MED25 Missense_Mutation p.P682S 0.21 tolerated_low_confidence(0.58) probably_damaging(0.96) TCGA-3N-A9WD-06 19 50784928 50784928 C T MYH14 Silent p.A1456A 0.30 TCGA-3N-A9WD-06 19 50784929 50784929 C T MYH14 Missense_Mutation p.R1457W 0.29 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 19 51022472 51022472 C T LRRC4B Silent p.R166R 0.30 TCGA-3N-A9WD-06 19 51363307 51363307 C T KLK3 Missense_Mutation p.P237L 0.21 deleterious(0.02) benign(0.237) TCGA-3N-A9WD-06 19 51671117 51671117 C T CTD-3187F8.14 Intron 0.15 TCGA-3N-A9WD-06 19 51770669 51770669 G A SIGLECL1 Silent p.A151A 0.12 TCGA-3N-A9WD-06 19 51827144 51827144 C T IGLON5 Silent p.V129V 0.13 TCGA-3N-A9WD-06 19 52909780 52909780 C T ZNF528 Missense_Mutation p.P52L 0.23 tolerated(0.5) benign(0.127) TCGA-3N-A9WD-06 19 53762139 53762139 G A VN1R2 Missense_Mutation p.V171I 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-3N-A9WD-06 19 54377822 54377822 G A MYADM 3'UTR 0.19 TCGA-3N-A9WD-06 19 54395788 54395788 C G PRKCG Missense_Mutation p.R238G 0.14 deleterious(0.01) benign(0.034) TCGA-3N-A9WD-06 19 55085850 55085850 G A LILRA2 Silent p.G51G 0.18 TCGA-3N-A9WD-06 19 55086976 55086976 C T LILRA2 Silent p.S303S 0.26 TCGA-3N-A9WD-06 19 55247503 55247503 G A KIR3DL3 Silent p.Q391Q 0.15 TCGA-3N-A9WD-06 19 55247549 55247549 G A KIR3DL3 Missense_Mutation p.D407N 0.18 tolerated(0.06) benign(0.259) TCGA-3N-A9WD-06 19 55258819 55258819 G A KIR2DL3 Missense_Mutation p.E233K 0.24 tolerated(0.18) probably_damaging(0.991) TCGA-3N-A9WD-06 19 55333206 55333206 C T KIR3DL1 Missense_Mutation p.P281L 0.29 tolerated(0.1) benign(0.009) TCGA-3N-A9WD-06 19 55435190 55435190 A C NLRP7 Missense_Mutation p.V1011G 0.16 deleterious(0) possibly_damaging(0.879) TCGA-3N-A9WD-06 19 56243965 56243965 G A NLRP9 Missense_Mutation p.S411F 0.18 tolerated(0.09) benign(0.032) TCGA-3N-A9WD-06 19 56296989 56296989 G A NLRP11 3'UTR 0.25 TCGA-3N-A9WD-06 19 56321408 56321408 C T NLRP11 Missense_Mutation p.E190K 0.17 deleterious(0.04) benign(0.303) TCGA-3N-A9WD-06 19 56363401 56363401 C T NLRP4 5'UTR 0.26 TCGA-3N-A9WD-06 19 57027681 57027681 C T ZNF471 Missense_Mutation p.S24F 0.14 deleterious(0) probably_damaging(0.951) TCGA-3N-A9WD-06 19 5772804 5772804 G A CATSPERD Missense_Mutation p.R590Q 0.17 tolerated(0.22) benign(0.062) TCGA-3N-A9WD-06 19 57931642 57931642 T C ZNF17 Missense_Mutation p.V261A 0.19 deleterious(0) benign(0.181) TCGA-3N-A9WD-06 19 5843935 5843935 G A FUT3 Silent p.L306L 0.06 TCGA-3N-A9WD-06 19 58455307 58455307 G A ZNF256 Missense_Mutation p.S52F 0.19 deleterious(0) probably_damaging(0.942) TCGA-3N-A9WD-06 19 58490350 58490350 T C ZNF606 Silent p.K566K 0.24 TCGA-3N-A9WD-06 19 58967772 58967772 C T ZNF324B Silent p.G487G 0.18 TCGA-3N-A9WD-06 19 6307301 6307301 C T ACER1 Silent p.K163K 0.29 TCGA-3N-A9WD-06 19 6418593 6418593 C T KHSRP Splice_Site p.X261_splice 0.22 TCGA-3N-A9WD-06 19 6586126 6586126 G A CD70 Nonsense_Mutation p.R163* 0.25 TCGA-3N-A9WD-06 19 7117234 7117234 G T INSR Missense_Mutation p.P1328T 0.08 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 19 9047833 9047833 C T MUC16 Silent p.L11266L 0.22 TCGA-3N-A9WD-06 19 9056706 9056706 G A MUC16 Missense_Mutation p.P10247L 0.26 possibly_damaging(0.851) TCGA-3N-A9WD-06 19 9057427 9057427 G A MUC16 Missense_Mutation p.P10007S 0.25 unknown(0) TCGA-3N-A9WD-06 19 9060934 9060934 C T MUC16 Missense_Mutation p.D8838N 0.17 unknown(0) TCGA-3N-A9WD-06 19 9062015 9062015 C T MUC16 Silent p.A8477A 0.27 TCGA-3N-A9WD-06 19 9063053 9063053 C T MUC16 Silent p.G8131G 0.22 TCGA-3N-A9WD-06 19 9063254 9063254 G A MUC16 Silent p.S8064S 0.33 TCGA-3N-A9WD-06 19 9063923 9063923 C T MUC16 Silent p.G7841G 0.16 TCGA-3N-A9WD-06 19 9066195 9066195 C T MUC16 Nonsense_Mutation p.W7084* 0.17 TCGA-3N-A9WD-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.25 unknown(0) TCGA-3N-A9WD-06 19 9085184 9085184 G A MUC16 Missense_Mutation p.P2211S 0.23 unknown(0) TCGA-3N-A9WD-06 19 9086713 9086713 G A MUC16 Missense_Mutation p.S1701F 0.19 unknown(0) TCGA-3N-A9WD-06 19 9226346 9226346 G A OR7G1 Silent p.L32L 0.21 TCGA-3N-A9WD-06 1 100568522 100568522 A T SASS6 Missense_Mutation p.S555T 0.40 tolerated(0.51) benign(0.007) TCGA-3N-A9WD-06 1 103468034 103468034 G A COL11A1 Missense_Mutation p.P683S 0.54 unknown(0) TCGA-3N-A9WD-06 1 103488355 103488355 G A COL11A1 Silent p.P396P 0.49 TCGA-3N-A9WD-06 1 110022195 110022195 G A SYPL2 3'UTR 0.42 TCGA-3N-A9WD-06 1 110255889 110255889 A G GSTM5 Intron 0.29 TCGA-3N-A9WD-06 1 1115451 1115451 G A TTLL10 Silent p.E79E 0.50 TCGA-3N-A9WD-06 1 111778745 111778745 G A CHI3L2 Silent p.Q235Q 0.09 TCGA-3N-A9WD-06 1 113653041 113653041 G T LRIG2 Missense_Mutation p.W552L 0.42 tolerated(0.09) benign(0) TCGA-3N-A9WD-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.39 deleterious(0) benign(0.109) TCGA-3N-A9WD-06 1 115276466 115276495 CAACTTCTTTACCCTAAATCAGAAGGGGTT - CSDE1 Splice_Site p.X284_splice 0.41 TCGA-3N-A9WD-06 1 119427393 119427393 G A TBX15 Missense_Mutation p.P485S 0.46 tolerated_low_confidence(0.45) benign(0.043) TCGA-3N-A9WD-06 1 119428038 119428038 G A TBX15 Missense_Mutation p.H270Y 0.56 tolerated(0.08) probably_damaging(0.968) TCGA-3N-A9WD-06 1 120295227 120295227 C A HMGCS2 Silent p.V455V 0.07 TCGA-3N-A9WD-06 1 120458186 120458186 G A NOTCH2 Missense_Mutation p.P2387S 0.48 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 1 12820830 12820830 G A C1orf158 Silent p.R177R 0.39 TCGA-3N-A9WD-06 1 12907998 12907998 G A HNRNPCL1 Missense_Mutation p.H49Y 0.14 deleterious(0) possibly_damaging(0.718) TCGA-3N-A9WD-06 1 149931640 149931640 G A OTUD7B Nonsense_Mutation p.R270* 0.44 TCGA-3N-A9WD-06 1 149931641 149931641 G A OTUD7B Silent p.P269P 0.44 TCGA-3N-A9WD-06 1 150525620 150525620 G A ADAMTSL4 Missense_Mutation p.E109K 0.42 tolerated(0.24) benign(0.004) TCGA-3N-A9WD-06 1 150601987 150601987 C T ENSA 5'UTR 0.36 TCGA-3N-A9WD-06 1 152275879 152275879 G A FLG Missense_Mutation p.S3828L 0.44 unknown(0) TCGA-3N-A9WD-06 1 152278009 152278009 C G FLG Missense_Mutation p.R3118T 0.46 unknown(0) TCGA-3N-A9WD-06 1 152287016 152287016 C T FLG Missense_Mutation p.E116K 0.47 benign(0.053) TCGA-3N-A9WD-06 1 152759961 152759961 C T LCE1E Silent p.S62S 0.48 TCGA-3N-A9WD-06 1 152777439 152777439 G A LCE1C 3'UTR 0.62 TCGA-3N-A9WD-06 1 155783448 155783448 G A GON4L Missense_Mutation p.P477S 0.43 tolerated(0.07) possibly_damaging(0.803) TCGA-3N-A9WD-06 1 156437961 156437961 G A MEF2D Missense_Mutation p.P460S 0.11 tolerated(0.13) benign(0.08) TCGA-3N-A9WD-06 1 157512805 157512805 G A FCRL5 Missense_Mutation p.H323Y 0.34 tolerated(0.3) possibly_damaging(0.677) TCGA-3N-A9WD-06 1 160171078 160171078 C T CASQ1 Missense_Mutation p.P368L 0.52 deleterious(0.01) possibly_damaging(0.891) TCGA-3N-A9WD-06 1 161789469 161789469 C T ATF6 Missense_Mutation p.S319F 0.30 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WD-06 1 161789470 161789470 C T ATF6 Silent p.S319S 0.31 TCGA-3N-A9WD-06 1 169695868 169695868 G A SELE Silent p.L575L 0.27 TCGA-3N-A9WD-06 1 171178011 171178011 G A FMO2 Silent p.A445A 0.45 TCGA-3N-A9WD-06 1 17567202 17567202 C G PADI1 Missense_Mutation p.P569A 0.33 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 1 177198961 177198961 G A BRINP2 5'UTR 0.55 TCGA-3N-A9WD-06 1 180243540 180243540 G - LHX4 Frame_Shift_Del p.V334Wfs*15 0.30 TCGA-3N-A9WD-06 1 182025540 182025540 C T ZNF648 Missense_Mutation p.D536N 0.52 deleterious(0.01) probably_damaging(0.96) TCGA-3N-A9WD-06 1 190129977 190129977 G A BRINP3 Silent p.F335F 0.33 TCGA-3N-A9WD-06 1 201061224 201061224 C T CACNA1S Silent p.L139L 0.44 TCGA-3N-A9WD-06 1 201182530 201182530 G A IGFN1 Missense_Mutation p.E2837K 0.52 benign(0.102) TCGA-3N-A9WD-06 1 214178526 214178526 C T PROX1 Missense_Mutation p.P582S 0.42 deleterious(0) benign(0.147) TCGA-3N-A9WD-06 1 22191784 22191784 G A HSPG2 Silent p.F1463F 0.44 TCGA-3N-A9WD-06 1 226496929 226496929 G A LIN9 5'UTR 0.14 TCGA-3N-A9WD-06 1 22846597 22846597 C T ZBTB40 Silent p.F959F 0.10 TCGA-3N-A9WD-06 1 235577839 235577839 G A TBCE Missense_Mutation p.D93N 0.47 tolerated(0.21) benign(0.077) TCGA-3N-A9WD-06 1 24022879 24022879 C T RPL11 3'UTR 0.26 TCGA-3N-A9WD-06 1 240371239 240371239 C T FMN2 Missense_Mutation p.P1043S 0.44 unknown(0) TCGA-3N-A9WD-06 1 248616767 248616767 C T OR2T2 Silent p.L223L 0.29 TCGA-3N-A9WD-06 1 27992967 27992967 G A IFI6 Silent p.V114V 0.48 TCGA-3N-A9WD-06 1 31437716 31437716 G A PUM1 Silent p.L710L 0.08 TCGA-3N-A9WD-06 1 31656856 31656856 C T NKAIN1 Silent p.R93R 0.58 TCGA-3N-A9WD-06 1 34090845 34090845 C T CSMD2 Missense_Mutation p.R1729Q 0.28 tolerated(0.06) benign(0.187) TCGA-3N-A9WD-06 1 38183978 38183978 G A EPHA10 3'UTR 0.48 TCGA-3N-A9WD-06 1 39876569 39876569 A G KIAA0754 Missense_Mutation p.N75S 0.33 possibly_damaging(0.486) TCGA-3N-A9WD-06 1 39880293 39880293 C T KIAA0754 3'UTR 0.41 TCGA-3N-A9WD-06 1 47078734 47078734 C G MOB3C Missense_Mutation p.C139S 0.27 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 1 57257931 57257931 C T C1orf168 Silent p.K185K 0.11 TCGA-3N-A9WD-06 1 57333306 57333306 C A C8A Silent p.P34P 0.17 TCGA-3N-A9WD-06 1 57480733 57480733 G A DAB1 Missense_Mutation p.P423S 0.10 deleterious(0.05) probably_damaging(0.954) TCGA-3N-A9WD-06 1 66102394 66102394 G A LEPR Missense_Mutation p.G1065E 0.45 tolerated(0.8) benign(0.008) TCGA-3N-A9WD-06 1 67155916 67155916 C T SGIP1 Missense_Mutation p.P496L 0.46 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WD-06 1 67896100 67896100 C T SERBP1 5'Flank 0.40 TCGA-3N-A9WD-06 1 75679658 75679658 C T SLC44A5 Missense_Mutation p.E607K 0.53 tolerated(1) benign(0.013) TCGA-3N-A9WD-06 1 75693543 75693543 C T SLC44A5 Splice_Site p.X285_splice 0.44 TCGA-3N-A9WD-06 1 82437590 82437590 C T LPHN2 Silent p.T986T 0.41 TCGA-3N-A9WD-06 1 89573834 89573834 A C GBP2 3'UTR 0.46 TCGA-3N-A9WD-06 20 10541468 10541468 G A SLX4IP Missense_Mutation p.G80S 0.33 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WD-06 20 13053007 13053007 C T SPTLC3 Missense_Mutation p.P136L 0.18 tolerated(0.13) possibly_damaging(0.493) TCGA-3N-A9WD-06 20 14665565 14665565 A T MACROD2 Silent p.G126G 0.17 TCGA-3N-A9WD-06 20 1629761 1629761 G A SIRPG Nonsense_Mutation p.R123* 0.22 TCGA-3N-A9WD-06 20 17610549 17610549 C T RRBP1 Missense_Mutation p.E457K 0.18 deleterious(0) possibly_damaging(0.486) TCGA-3N-A9WD-06 20 17622479 17622479 G T RRBP1 Missense_Mutation p.A283E 0.20 deleterious(0) possibly_damaging(0.858) TCGA-3N-A9WD-06 20 18297494 18297494 A T ZNF133 3'UTR 0.16 TCGA-3N-A9WD-06 20 19701667 19701667 G A SLC24A3 Silent p.L606L 0.18 TCGA-3N-A9WD-06 20 19701668 19701668 G A SLC24A3 Missense_Mutation p.D607N 0.18 tolerated(0.17) possibly_damaging(0.766) TCGA-3N-A9WD-06 20 20021399 20021399 G A CRNKL1 Silent p.A573A 0.13 TCGA-3N-A9WD-06 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.22 deleterious_low_confidence(0) benign(0.022) TCGA-3N-A9WD-06 20 2297749 2297749 G A TGM3 Silent p.G235G 0.33 TCGA-3N-A9WD-06 20 2413193 2413193 C T TGM6 Silent p.S675S 0.14 TCGA-3N-A9WD-06 20 31812241 31812241 C T BPIFA3 Missense_Mutation p.S120L 0.12 tolerated(0.11) benign(0.137) TCGA-3N-A9WD-06 20 31825597 31825597 C T BPIFA1 Missense_Mutation p.P27L 0.17 deleterious(0.02) possibly_damaging(0.776) TCGA-3N-A9WD-06 20 3210896 3210896 C T SLC4A11 Missense_Mutation p.E519K 0.13 deleterious(0) probably_damaging(0.944) TCGA-3N-A9WD-06 20 3214823 3214823 G A SLC4A11 Silent p.F186F 0.16 TCGA-3N-A9WD-06 20 32298430 32298430 T A PXMP4 Silent p.A102A 0.11 TCGA-3N-A9WD-06 20 33449261 33449261 G A GGT7 Missense_Mutation p.S221F 0.26 tolerated(0.12) benign(0.004) TCGA-3N-A9WD-06 20 34059872 34059872 C G CEP250 Intron 0.12 TCGA-3N-A9WD-06 20 34599119 34599119 C T CNBD2 Silent p.P403P 0.15 TCGA-3N-A9WD-06 20 35261014 35261014 C T SLA2 Silent p.E122E 0.10 TCGA-3N-A9WD-06 20 36031230 36031230 C T SRC Missense_Mutation p.S450F 0.17 deleterious(0) probably_damaging(0.96) TCGA-3N-A9WD-06 20 3844927 3844927 C T MAVS Missense_Mutation p.S217F 0.13 deleterious(0.01) benign(0.368) TCGA-3N-A9WD-06 20 41076949 41076949 C T PTPRT Missense_Mutation p.E491K 0.14 tolerated(0.05) probably_damaging(0.975) TCGA-3N-A9WD-06 20 42788274 42788274 C T JPH2 Missense_Mutation p.E385K 0.40 deleterious(0) possibly_damaging(0.793) TCGA-3N-A9WD-06 20 42788484 42788484 C T JPH2 Missense_Mutation p.E315K 0.12 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 20 43851171 43851171 C T SEMG2 Missense_Mutation p.H300Y 0.24 tolerated(0.96) benign(0.006) TCGA-3N-A9WD-06 20 44665418 44665418 G A SLC12A5 Silent p.T178T 0.14 TCGA-3N-A9WD-06 20 45130662 45130662 C T ZNF334 Missense_Mutation p.G439E 0.10 deleterious(0.01) possibly_damaging(0.632) TCGA-3N-A9WD-06 20 47648616 47648616 C T ARFGEF2 Silent p.I1698I 0.31 TCGA-3N-A9WD-06 20 50140016 50140016 G A NFATC2 Missense_Mutation p.S255L 0.24 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 20 50408371 50408371 C T SALL4 Silent p.Q217Q 0.16 TCGA-3N-A9WD-06 20 51872808 51872808 C T TSHZ2 Silent p.T937T 0.27 TCGA-3N-A9WD-06 20 55027418 55027418 G A CASS4 Missense_Mutation p.D396N 0.19 deleterious(0.02) benign(0.08) TCGA-3N-A9WD-06 20 55929129 55929129 C T RAE1 Missense_Mutation p.T12I 0.16 tolerated(0.05) unknown(0) TCGA-3N-A9WD-06 20 57767076 57767076 C T ZNF831 Silent p.G334G 0.23 TCGA-3N-A9WD-06 20 57768659 57768659 C T ZNF831 Missense_Mutation p.P862L 0.16 tolerated(0.4) benign(0.007) TCGA-3N-A9WD-06 20 57829739 57829739 C T ZNF831 Nonsense_Mutation p.R1659* 0.10 TCGA-3N-A9WD-06 20 5844076 5844076 C T C20orf196 Silent p.F195F 0.16 TCGA-3N-A9WD-06 20 60701385 60701385 C T LSM14B Missense_Mutation p.S106L 0.14 tolerated(0.21) benign(0.116) TCGA-3N-A9WD-06 20 61511653 61511653 C T DIDO1 Silent p.A1885A 0.37 TCGA-3N-A9WD-06 20 62192209 62192209 T - HELZ2 Frame_Shift_Del p.D2407Afs*38 0.29 TCGA-3N-A9WD-06 20 62421465 62421465 G A ZBTB46 Silent p.L216L 0.26 TCGA-3N-A9WD-06 21 10970038 10970038 T C TPTE Silent p.G30G 0.17 TCGA-3N-A9WD-06 21 19685372 19685372 C T TMPRSS15 Silent p.T685T 0.21 TCGA-3N-A9WD-06 21 37418290 37418290 G A SETD4 Missense_Mutation p.P106S 0.13 deleterious(0.03) possibly_damaging(0.872) TCGA-3N-A9WD-06 21 43783418 43783418 C T TFF1 Missense_Mutation p.V62I 0.24 tolerated(0.26) benign(0.113) TCGA-3N-A9WD-06 21 45681081 45681081 C T DNMT3L Missense_Mutation p.G21E 0.16 deleterious(0.02) possibly_damaging(0.544) TCGA-3N-A9WD-06 21 48081741 48081741 C T PRMT2 Silent p.I330I 0.30 TCGA-3N-A9WD-06 22 17071785 17071785 G A CCT8L2 Silent p.I552I 0.16 TCGA-3N-A9WD-06 22 17072535 17072535 C T CCT8L2 Silent p.E302E 0.17 TCGA-3N-A9WD-06 22 17119484 17119484 C T TPTEP1 RNA 0.32 TCGA-3N-A9WD-06 22 19168255 19168255 G A CLTCL1 Missense_Mutation p.P1631L 0.14 deleterious(0.04) benign(0.021) TCGA-3N-A9WD-06 22 20458410 20458410 C T RIMBP3 Silent p.K964K 0.10 TCGA-3N-A9WD-06 22 22735545 22735545 G A IGLV1-44 Missense_Mutation p.G61E 0.18 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-3N-A9WD-06 22 22869806 22869806 C T ZNF280A Missense_Mutation p.G50E 0.22 deleterious(0.01) possibly_damaging(0.794) TCGA-3N-A9WD-06 22 23404019 23404019 C T RTDR1 Missense_Mutation p.G253D 0.24 deleterious(0) probably_damaging(0.979) TCGA-3N-A9WD-06 22 23523591 23523591 C T BCR Silent p.P148P 0.27 TCGA-3N-A9WD-06 22 24167597 24167597 C T SMARCB1 Silent p.A327A 0.26 TCGA-3N-A9WD-06 22 30742430 30742430 G A SF3A1 Silent p.D88D 0.25 TCGA-3N-A9WD-06 22 31663785 31663785 C T LIMK2 Silent p.D363D 0.17 TCGA-3N-A9WD-06 22 32586919 32586919 G A RFPL2 Missense_Mutation p.S326F 0.21 deleterious(0.04) probably_damaging(0.985) TCGA-3N-A9WD-06 22 32754113 32754113 C T RFPL3 Missense_Mutation p.L19F 0.22 tolerated_low_confidence(0.3) benign(0) TCGA-3N-A9WD-06 22 37425383 37425383 C T MPST Missense_Mutation p.S261F 0.21 deleterious(0) possibly_damaging(0.713) TCGA-3N-A9WD-06 22 37770170 37770170 G A ELFN2 Missense_Mutation p.R469C 0.28 tolerated(0.06) benign(0.116) TCGA-3N-A9WD-06 22 38516861 38516861 G A PLA2G6 Silent p.F549F 0.17 TCGA-3N-A9WD-06 22 38531019 38531019 G A PLA2G6 Silent p.P290P 0.17 TCGA-3N-A9WD-06 22 40661568 40661568 A G TNRC6B Missense_Mutation p.N445S 0.18 tolerated(0.42) benign(0.021) TCGA-3N-A9WD-06 22 50437776 50437776 T G IL17REL Splice_Site p.X183_splice 0.21 TCGA-3N-A9WD-06 2 102641122 102641122 G C IL1R2 Silent p.G293G 0.22 TCGA-3N-A9WD-06 2 102805732 102805732 G A IL1RL2 Missense_Mutation p.M85I 0.17 tolerated(0.46) benign(0.002) TCGA-3N-A9WD-06 2 107460383 107460383 G A ST6GAL2 Silent p.F17F 0.19 TCGA-3N-A9WD-06 2 108496481 108496481 C T RGPD4 Missense_Mutation p.S1661F 0.19 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-3N-A9WD-06 2 108627277 108627277 C T SLC5A7 Missense_Mutation p.S568F 0.32 deleterious_low_confidence(0) benign(0.312) TCGA-3N-A9WD-06 2 109545771 109545771 G A EDAR Missense_Mutation p.S80F 0.15 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WD-06 2 112933377 112933377 G A FBLN7 Missense_Mutation p.G165R 0.22 deleterious(0.05) benign(0.071) TCGA-3N-A9WD-06 2 113587997 113587997 C T IL1B Missense_Mutation p.G251R 0.20 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 2 113587998 113587998 C T IL1B Silent p.L250L 0.20 TCGA-3N-A9WD-06 2 113786574 113786574 C T IL36B Missense_Mutation p.G68E 0.21 tolerated_low_confidence(0.27) benign(0.372) TCGA-3N-A9WD-06 2 119600658 119600658 G A EN1 Silent p.S345S 0.19 TCGA-3N-A9WD-06 2 128387305 128387305 C T MYO7B Silent p.T1544T 0.19 TCGA-3N-A9WD-06 2 128396762 128396762 G A LIMS2 3'UTR 0.21 TCGA-3N-A9WD-06 2 130725756 130725756 C T RAB6C-AS1 RNA 0.31 TCGA-3N-A9WD-06 2 130898753 130898753 G A CCDC74B Missense_Mutation p.P221S 0.22 tolerated(0.34) benign(0.136) TCGA-3N-A9WD-06 2 132010551 132010551 C T POTEE Missense_Mutation p.P553S 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-3N-A9WD-06 2 133174699 133174699 G A GPR39 Nonsense_Mutation p.W28* 0.23 TCGA-3N-A9WD-06 2 136575422 136575422 C T LCT Missense_Mutation p.G399E 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 2 137814437 137814437 G A THSD7B Missense_Mutation p.G196E 0.21 deleterious(0.03) possibly_damaging(0.904) TCGA-3N-A9WD-06 2 141108392 141108392 T C LRP1B Missense_Mutation p.K3956E 0.25 benign(0.292) TCGA-3N-A9WD-06 2 141250219 141250219 C T LRP1B Silent p.R3026R 0.18 TCGA-3N-A9WD-06 2 149227016 149227016 C T MBD5 Missense_Mutation p.P502S 0.14 deleterious(0) possibly_damaging(0.803) TCGA-3N-A9WD-06 2 152289646 152289646 C T RIF1 Silent p.I327I 0.10 TCGA-3N-A9WD-06 2 152522811 152522811 G A NEB Silent p.I1608I 0.21 TCGA-3N-A9WD-06 2 155711704 155711704 C T KCNJ3 Missense_Mutation p.P462L 0.17 tolerated_low_confidence(0.2) benign(0.001) TCGA-3N-A9WD-06 2 16086099 16086099 G A MYCN Silent p.K425K 0.13 TCGA-3N-A9WD-06 2 160901539 160901539 C T PLA2R1 Missense_Mutation p.G80D 0.19 deleterious(0.01) benign(0.098) TCGA-3N-A9WD-06 2 163374308 163374308 G A KCNH7 Missense_Mutation p.S275L 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-3N-A9WD-06 2 164467061 164467061 C T FIGN Missense_Mutation p.M427I 0.09 tolerated(0.32) benign(0.002) TCGA-3N-A9WD-06 2 165548904 165548904 T A COBLL1 Missense_Mutation p.N1081Y 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-3N-A9WD-06 2 165947112 165947112 C T SCN3A Missense_Mutation p.D1851N 0.21 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 2 166003293 166003293 C T SCN3A Missense_Mutation p.G543R 0.18 deleterious(0.03) possibly_damaging(0.495) TCGA-3N-A9WD-06 2 166892938 166892938 C T SCN1A Missense_Mutation p.D1017N 0.12 deleterious(0.04) benign(0.008) TCGA-3N-A9WD-06 2 167263089 167263089 G A SCN7A Silent p.L1350L 0.11 TCGA-3N-A9WD-06 2 167298001 167298001 C T SCN7A Missense_Mutation p.E688K 0.25 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 2 16734190 16734190 C T FAM49A 3'UTR 0.19 TCGA-3N-A9WD-06 2 168099837 168099837 G A XIRP2 Silent p.E645E 0.25 TCGA-3N-A9WD-06 2 168103162 168103162 G A XIRP2 Missense_Mutation p.A1754T 0.17 probably_damaging(0.967) TCGA-3N-A9WD-06 2 168104561 168104561 C T XIRP2 Missense_Mutation p.S2220F 0.10 possibly_damaging(0.506) TCGA-3N-A9WD-06 2 168104562 168104562 C T XIRP2 Silent p.S2220S 0.08 TCGA-3N-A9WD-06 2 168105044 168105044 C T XIRP2 Missense_Mutation p.S2381F 0.25 probably_damaging(0.957) TCGA-3N-A9WD-06 2 169850303 169850303 C T ABCB11 Missense_Mutation p.G234E 0.20 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 2 170113691 170113691 A G LRP2 Missense_Mutation p.L861P 0.12 benign(0.033) TCGA-3N-A9WD-06 2 171238535 171238535 G A MYO3B Silent p.R327R 0.30 TCGA-3N-A9WD-06 2 17877603 17877603 A G SMC6 Silent p.L829L 0.20 TCGA-3N-A9WD-06 2 179197700 179197700 C T OSBPL6 Missense_Mutation p.H197Y 0.15 tolerated(0.18) possibly_damaging(0.609) TCGA-3N-A9WD-06 2 179431867 179431867 C T TTN Missense_Mutation p.R26331Q 0.18 TCGA-3N-A9WD-06 2 179436083 179436083 C T TTN Missense_Mutation p.E24926K 0.13 TCGA-3N-A9WD-06 2 179451939 179451939 C T TTN Silent p.G21333G 0.15 TCGA-3N-A9WD-06 2 179458052 179458052 A C TTN Missense_Mutation p.V19628G 0.17 TCGA-3N-A9WD-06 2 179479398 179479398 G A TTN Silent p.T16281T 0.18 TCGA-3N-A9WD-06 2 179497476 179497476 G A TTN Silent p.V14419V 0.29 TCGA-3N-A9WD-06 2 179535870 179535870 G A TTN Missense_Mutation p.P11752L 0.19 TCGA-3N-A9WD-06 2 179542870 179542870 C T TTN Missense_Mutation p.E11326K 0.26 TCGA-3N-A9WD-06 2 179542874 179542874 T G TTN Missense_Mutation p.K11324N 0.28 TCGA-3N-A9WD-06 2 179565902 179565902 G A TTN Silent p.I10209I 0.18 TCGA-3N-A9WD-06 2 179595908 179595908 T G TTN Missense_Mutation p.E5828D 0.20 TCGA-3N-A9WD-06 2 179596173 179596173 C T TTN Missense_Mutation p.D5774N 0.24 TCGA-3N-A9WD-06 2 179616172 179616172 C T TTN Intron 0.15 TCGA-3N-A9WD-06 2 179616237 179616237 C T TTN Intron 0.13 TCGA-3N-A9WD-06 2 179635251 179635251 A C TTN Silent p.S2756S 0.13 TCGA-3N-A9WD-06 2 179647638 179647638 G A TTN Missense_Mutation p.R999C 0.17 TCGA-3N-A9WD-06 2 179659159 179659159 C T TTN Silent p.T455T 0.12 TCGA-3N-A9WD-06 2 179664340 179664340 G A TTN Missense_Mutation p.S263L 0.15 TCGA-3N-A9WD-06 2 179665278 179665278 C T TTN Missense_Mutation p.E143K 0.29 TCGA-3N-A9WD-06 2 179702336 179702336 C T CCDC141 Missense_Mutation p.E1204K 0.20 deleterious(0.02) possibly_damaging(0.627) TCGA-3N-A9WD-06 2 180036950 180036950 G A SESTD1 Missense_Mutation p.P89L 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-3N-A9WD-06 2 182543058 182543058 G A NEUROD1 Missense_Mutation p.S177F 0.29 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WD-06 2 183094853 183094853 G A PDE1A Silent p.I201I 0.12 TCGA-3N-A9WD-06 2 185800571 185800571 G A ZNF804A Missense_Mutation p.E150K 0.28 deleterious(0.01) benign(0.057) TCGA-3N-A9WD-06 2 189849935 189849935 C T COL3A1 Missense_Mutation p.P99S 0.21 unknown(0) TCGA-3N-A9WD-06 2 189849936 189849936 C T COL3A1 Missense_Mutation p.P99L 0.21 unknown(0) TCGA-3N-A9WD-06 2 189945763 189945763 G A COL5A2 Missense_Mutation p.R287C 0.09 probably_damaging(0.991) TCGA-3N-A9WD-06 2 1914025 1914025 C T MYT1L Missense_Mutation p.D600N 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-3N-A9WD-06 2 1914026 1914026 C T MYT1L Silent p.S599S 0.17 TCGA-3N-A9WD-06 2 1914070 1914070 C T MYT1L Missense_Mutation p.E585K 0.15 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 2 196681646 196681646 G A DNAH7 Missense_Mutation p.S3156L 0.18 deleterious(0) probably_damaging(0.982) TCGA-3N-A9WD-06 2 196709737 196709737 C T DNAH7 Silent p.G2978G 0.16 TCGA-3N-A9WD-06 2 196720612 196720612 C T DNAH7 Missense_Mutation p.E2840K 0.20 tolerated(0.15) benign(0.047) TCGA-3N-A9WD-06 2 202025316 202025316 C T CFLAR Nonsense_Mutation p.Q319* 0.22 TCGA-3N-A9WD-06 2 207171560 207171560 G A ZDBF2 Missense_Mutation p.E770K 0.28 deleterious(0.02) possibly_damaging(0.678) TCGA-3N-A9WD-06 2 207175701 207175701 T G ZDBF2 Missense_Mutation p.F2150C 0.27 deleterious(0.05) possibly_damaging(0.759) TCGA-3N-A9WD-06 2 212248706 212248706 T G ERBB4 Missense_Mutation p.E1187D 0.26 tolerated(0.57) benign(0.119) TCGA-3N-A9WD-06 2 21236086 21236086 G A APOB Missense_Mutation p.R1388C 0.22 benign(0.333) TCGA-3N-A9WD-06 2 215278915 215278915 G A VWC2L 5'UTR 0.20 TCGA-3N-A9WD-06 2 215279299 215279299 G A VWC2L Missense_Mutation p.E128K 0.22 deleterious(0.04) probably_damaging(0.969) TCGA-3N-A9WD-06 2 218925085 218925085 C T CXCR2P1 RNA 0.12 TCGA-3N-A9WD-06 2 219614815 219614815 C T TTLL4 Missense_Mutation p.P940L 0.23 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 2 223168689 223168689 G A CCDC140 Missense_Mutation p.G23E 0.26 tolerated_low_confidence(0.71) probably_damaging(0.969) TCGA-3N-A9WD-06 2 224463641 224463641 C T SCG2 Silent p.Q120Q 0.22 TCGA-3N-A9WD-06 2 226378240 226378240 G A NYAP2 Silent p.G125G 0.08 TCGA-3N-A9WD-06 2 226446730 226446730 G A NYAP2 Silent p.P199P 0.19 TCGA-3N-A9WD-06 2 227958902 227958902 C T COL4A4 Silent p.G436G 0.13 TCGA-3N-A9WD-06 2 228882377 228882377 G A SPHKAP Missense_Mutation p.P1065S 0.11 tolerated(0.45) benign(0.007) TCGA-3N-A9WD-06 2 229890387 229890387 G A PID1 Silent p.S236S 0.25 TCGA-3N-A9WD-06 2 230020599 230020599 G A PID1 Missense_Mutation p.P69S 0.19 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-3N-A9WD-06 2 232156066 232156066 G A ARMC9 Missense_Mutation p.G543R 0.12 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 2 232262950 232262950 C T B3GNT7 Missense_Mutation p.L174F 0.19 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WD-06 2 234628204 234628204 G A UGT1A4 Silent p.V246V 0.06 TCGA-3N-A9WD-06 2 234652384 234652384 T G UGT1A10 Intron 0.04 TCGA-3N-A9WD-06 2 242039271 242039271 G A MTERFD2 Silent p.A20A 0.32 TCGA-3N-A9WD-06 2 242187664 242187664 G A HDLBP Missense_Mutation p.P538S 0.22 tolerated(0.21) possibly_damaging(0.733) TCGA-3N-A9WD-06 2 27360758 27360758 G A C2orf53 Missense_Mutation p.S147F 0.13 tolerated(0.14) benign(0.006) TCGA-3N-A9WD-06 2 29052060 29052060 G A SPDYA Missense_Mutation p.E143K 0.10 deleterious(0) probably_damaging(0.982) TCGA-3N-A9WD-06 2 29256353 29256353 G A FAM179A Missense_Mutation p.E717K 0.23 deleterious(0.04) possibly_damaging(0.786) TCGA-3N-A9WD-06 2 29294709 29294709 G A C2orf71 Missense_Mutation p.P807S 0.12 tolerated(0.15) benign(0.272) TCGA-3N-A9WD-06 2 30959380 30959380 C T CAPN13 Missense_Mutation p.V571I 0.19 tolerated(0.32) benign(0.002) TCGA-3N-A9WD-06 2 31595132 31595132 G A XDH Silent p.L606L 0.21 TCGA-3N-A9WD-06 2 36970370 36970370 C T VIT Silent p.Y82Y 0.24 TCGA-3N-A9WD-06 2 39931304 39931304 A C TMEM178A Missense_Mutation p.T162P 0.20 deleterious(0.02) possibly_damaging(0.601) TCGA-3N-A9WD-06 2 40342390 40342390 C T SLC8A1 3'UTR 0.21 TCGA-3N-A9WD-06 2 42522347 42522347 T G EML4 Missense_Mutation p.F434C 0.12 tolerated(0.06) possibly_damaging(0.541) TCGA-3N-A9WD-06 2 47221620 47221620 C T TTC7A Missense_Mutation p.A323V 0.19 tolerated(0.2) benign(0.017) TCGA-3N-A9WD-06 2 47233068 47233068 G A TTC7A Missense_Mutation p.R358Q 0.27 tolerated(0.09) benign(0.07) TCGA-3N-A9WD-06 2 48950671 48950671 C T LHCGR Missense_Mutation p.E154K 0.11 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WD-06 2 51254863 51254863 C T NRXN1 Nonsense_Mutation p.W183* 0.16 TCGA-3N-A9WD-06 2 54081910 54081911 - T GPR75 5'UTR 0.16 TCGA-3N-A9WD-06 2 54785795 54785795 C T SPTBN1 Intron 0.38 TCGA-3N-A9WD-06 2 65300044 65300044 C T CEP68 Missense_Mutation p.P605L 0.24 tolerated(1) benign(0.006) TCGA-3N-A9WD-06 2 71043364 71043364 C T CLEC4F Missense_Mutation p.M383I 0.16 deleterious(0.02) benign(0.009) TCGA-3N-A9WD-06 2 71740949 71740949 G A DYSF Silent p.R219R 0.16 TCGA-3N-A9WD-06 2 74438352 74438352 C T MTHFD2 Nonsense_Mutation p.R233* 0.21 TCGA-3N-A9WD-06 2 74750486 74750486 G A DQX1 Missense_Mutation p.S332F 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-3N-A9WD-06 2 74762730 74762730 G A LOXL3 Silent p.A467A 0.17 TCGA-3N-A9WD-06 2 75113779 75113779 C T HK2 Missense_Mutation p.S733L 0.06 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WD-06 2 75745304 75745304 G A EVA1A 5'UTR 0.15 TCGA-3N-A9WD-06 2 89156842 89156842 G A IGKC 3'UTR 0.31 TCGA-3N-A9WD-06 2 89185543 89185543 C T IGKV4-1 Silent p.T79T 0.16 TCGA-3N-A9WD-06 2 90199113 90199113 G A IGKV1D-12 Missense_Mutation p.D92N 0.22 deleterious(0.03) benign(0.166) TCGA-3N-A9WD-06 2 96950253 96950253 G A SNRNP200 Missense_Mutation p.T1412I 0.32 tolerated(0.05) benign(0.139) TCGA-3N-A9WD-06 3 10080989 10080995 CTCGACT - FANCD2 Frame_Shift_Del p.R174Lfs*5 0.29 TCGA-3N-A9WD-06 3 108833269 108833269 G A MORC1 Silent p.F27F 0.36 TCGA-3N-A9WD-06 3 111312781 111312781 C T ZBED2 Missense_Mutation p.G90R 0.41 tolerated(0.07) probably_damaging(1) TCGA-3N-A9WD-06 3 111983046 111983046 C T SLC9C1 Splice_Site p.X341_splice 0.44 TCGA-3N-A9WD-06 3 115395281 115395281 C T GAP43 Missense_Mutation p.S187L 0.36 tolerated(0.13) benign(0.011) TCGA-3N-A9WD-06 3 121712413 121712413 A G ILDR1 Silent p.L395L 0.36 TCGA-3N-A9WD-06 3 121720279 121720279 G C ILDR1 Missense_Mutation p.I174M 0.36 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 3 124641131 124641131 C T MUC13 Silent p.K218K 0.32 TCGA-3N-A9WD-06 3 126915854 126915854 C T C3orf56 Missense_Mutation p.S109F 0.41 deleterious(0.02) possibly_damaging(0.683) TCGA-3N-A9WD-06 3 138762818 138762818 G A PRR23C Silent p.F215F 0.53 TCGA-3N-A9WD-06 3 14154457 14154457 G A CHCHD4 Missense_Mutation p.P133L 0.29 deleterious(0.01) unknown(0) TCGA-3N-A9WD-06 3 150840691 150840691 C T MED12L Missense_Mutation p.S109F 0.44 tolerated(0.08) possibly_damaging(0.812) TCGA-3N-A9WD-06 3 151046541 151046541 G A P2RY13 Silent p.L101L 0.54 TCGA-3N-A9WD-06 3 151164158 151164158 G A IGSF10 Missense_Mutation p.P1204L 0.40 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 3 151538229 151538229 C T AADAC Silent p.V140V 0.15 TCGA-3N-A9WD-06 3 167183055 167183055 G A SERPINI2 Nonsense_Mutation p.Q269* 0.42 TCGA-3N-A9WD-06 3 169644379 169644379 G A SAMD7 Missense_Mutation p.R110K 0.40 tolerated(0.11) benign(0.023) TCGA-3N-A9WD-06 3 172165359 172165359 G A GHSR Intron 0.41 TCGA-3N-A9WD-06 3 172224264 172224264 T G TNFSF10 3'UTR 0.52 TCGA-3N-A9WD-06 3 183772627 183772627 C T HTR3C Silent p.I62I 0.44 TCGA-3N-A9WD-06 3 183772628 183772628 C T HTR3C Missense_Mutation p.P63S 0.44 deleterious(0.05) benign(0.377) TCGA-3N-A9WD-06 3 19436703 19436703 C T KCNH8 Silent p.L359L 0.15 TCGA-3N-A9WD-06 3 26751356 26751356 G A LRRC3B Missense_Mutation p.E65K 0.45 deleterious(0) benign(0.233) TCGA-3N-A9WD-06 3 27335123 27335123 C T NEK10 Silent p.L443L 0.47 TCGA-3N-A9WD-06 3 35732389 35732389 C T ARPP21 Missense_Mutation p.S193L 0.45 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 3 36570432 36570432 C T STAC Silent p.F355F 0.36 TCGA-3N-A9WD-06 3 38138150 38138150 C T DLEC1 Silent p.F754F 0.41 TCGA-3N-A9WD-06 3 38651295 38651295 G A SCN5A Silent p.N288N 0.45 TCGA-3N-A9WD-06 3 3887657 3887657 C T LRRN1 Silent p.F444F 0.52 TCGA-3N-A9WD-06 3 38991786 38991786 G A SCN11A Missense_Mutation p.S23F 0.47 deleterious(0) possibly_damaging(0.868) TCGA-3N-A9WD-06 3 39307074 39307074 C T CX3CR1 Silent p.G341G 0.44 TCGA-3N-A9WD-06 3 46485063 46485063 G A LTF Silent p.F508F 0.35 TCGA-3N-A9WD-06 3 47041638 47041638 C T NBEAL2 Missense_Mutation p.S1350F 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-3N-A9WD-06 3 49049425 49049425 C T WDR6 Missense_Mutation p.P183L 0.09 tolerated(0.67) benign(0.03) TCGA-3N-A9WD-06 3 51297639 51297639 G A DOCK3 Missense_Mutation p.R746Q 0.52 tolerated(0.18) probably_damaging(0.996) TCGA-3N-A9WD-06 3 58092451 58092451 G A FLNB Missense_Mutation p.D598N 0.47 tolerated(0.06) probably_damaging(1) TCGA-3N-A9WD-06 3 64601759 64601759 C T ADAMTS9 Silent p.R967R 0.48 TCGA-3N-A9WD-06 3 77623717 77623717 C T ROBO2 Missense_Mutation p.A696V 0.37 deleterious(0.04) benign(0.007) TCGA-3N-A9WD-06 3 77666772 77666772 T A ROBO2 Silent p.V1150V 0.40 TCGA-3N-A9WD-06 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.39 TCGA-3N-A9WD-06 3 93595954 93595954 C T PROS1 Missense_Mutation p.E576K 0.46 tolerated(0.34) benign(0.033) TCGA-3N-A9WD-06 3 93714772 93714772 A T ARL13B Silent p.A38A 0.44 TCGA-3N-A9WD-06 3 9743556 9743556 C T MTMR14 Missense_Mutation p.L618F 0.49 tolerated(0.36) probably_damaging(0.986) TCGA-3N-A9WD-06 3 97711799 97711799 A C GABRR3 3'Flank 0.48 TCGA-3N-A9WD-06 4 100130063 100130063 G A ADH6 Missense_Mutation p.A197V 0.19 tolerated(0.23) benign(0.005) TCGA-3N-A9WD-06 4 100264011 100264011 C T ADH1C Missense_Mutation p.E257K 0.19 probably_damaging(0.999) TCGA-3N-A9WD-06 4 100264190 100264190 G A ADH1C Missense_Mutation p.A197V 0.22 benign(0.076) TCGA-3N-A9WD-06 4 100273819 100273819 C T ADH1C Missense_Mutation p.G5E 0.16 probably_damaging(0.996) TCGA-3N-A9WD-06 4 100527938 100527938 G T MTTP Nonsense_Mutation p.G460* 0.19 TCGA-3N-A9WD-06 4 106158345 106158345 G A TET2 Silent p.E1082E 0.09 TCGA-3N-A9WD-06 4 114275879 114275879 G A ANK2 Silent p.P2035P 0.23 TCGA-3N-A9WD-06 4 115750986 115750986 C T NDST4 Missense_Mutation p.G820E 0.18 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 4 121737700 121737700 C T PRDM5 Missense_Mutation p.G258E 0.18 deleterious(0) possibly_damaging(0.847) TCGA-3N-A9WD-06 4 126329733 126329733 C T FAT4 Nonsense_Mutation p.R1902* 0.14 TCGA-3N-A9WD-06 4 128626965 128626965 T C INTU Silent p.L596L 0.26 TCGA-3N-A9WD-06 4 138451045 138451045 G A PCDH18 Missense_Mutation p.S733F 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-3N-A9WD-06 4 138451711 138451711 C T PCDH18 Missense_Mutation p.G511E 0.07 tolerated(0.07) benign(0.367) TCGA-3N-A9WD-06 4 139093073 139093073 C T SLC7A11 3'UTR 0.21 TCGA-3N-A9WD-06 4 140441448 140441448 G A SETD7 Nonsense_Mutation p.R249* 0.17 TCGA-3N-A9WD-06 4 141832447 141832447 G A RNF150 Missense_Mutation p.P350L 0.26 tolerated(0.18) benign(0.004) TCGA-3N-A9WD-06 4 145061781 145061781 C T GYPA Missense_Mutation p.G3E 0.44 tolerated(1) benign(0.03) TCGA-3N-A9WD-06 4 151153977 151153977 C T DCLK2 Silent p.L538L 0.21 TCGA-3N-A9WD-06 4 155526109 155526109 G A FGG Silent p.I413I 0.22 TCGA-3N-A9WD-06 4 158257893 158257893 C T GRIA2 Missense_Mutation p.S613L 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-3N-A9WD-06 4 166924661 166924661 G A TLL1 Missense_Mutation p.E251K 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-3N-A9WD-06 4 167713328 167713328 C T SPOCK3 Silent p.E237E 0.15 TCGA-3N-A9WD-06 4 167713329 167713329 T A SPOCK3 Missense_Mutation p.E237V 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-3N-A9WD-06 4 169060656 169060656 G A ANXA10 Silent p.L40L 0.21 TCGA-3N-A9WD-06 4 169182092 169182092 C T DDX60 Missense_Mutation p.E1108K 0.18 tolerated(0.47) benign(0.015) TCGA-3N-A9WD-06 4 173269807 173269807 G A GALNTL6 Missense_Mutation p.E174K 0.24 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WD-06 4 176622854 176622854 G A GPM6A Silent p.I34I 0.26 TCGA-3N-A9WD-06 4 177100687 177100687 C T WDR17 Missense_Mutation p.P1309L 0.31 deleterious(0.01) benign(0.367) TCGA-3N-A9WD-06 4 177105873 177105873 C T SPATA4 3'UTR 0.25 TCGA-3N-A9WD-06 4 1818607 1818607 G A LETM1 Missense_Mutation p.T593I 0.16 deleterious(0.01) possibly_damaging(0.613) TCGA-3N-A9WD-06 4 183609486 183609486 G A TENM3 Missense_Mutation p.G735R 0.21 deleterious(0) probably_damaging(0.996) TCGA-3N-A9WD-06 4 186112041 186112041 A C KIAA1430 Missense_Mutation p.C104G 0.18 tolerated(0.36) benign(0.004) TCGA-3N-A9WD-06 4 186545580 186545580 C T SORBS2 Missense_Mutation p.E431K 0.15 tolerated(0.2) possibly_damaging(0.893) TCGA-3N-A9WD-06 4 187115722 187115722 G A CYP4V2 Missense_Mutation p.G95R 0.17 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 4 187454987 187454987 C T MTNR1A Silent p.R303R 0.11 TCGA-3N-A9WD-06 4 187455385 187455385 C T MTNR1A Missense_Mutation p.D171N 0.23 deleterious(0.03) benign(0.148) TCGA-3N-A9WD-06 4 189068162 189068162 G A TRIML1 Missense_Mutation p.G348E 0.29 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 4 36122828 36122828 T A ARAP2 Silent p.L1289L 0.24 TCGA-3N-A9WD-06 4 36130329 36130329 G A ARAP2 Missense_Mutation p.P1156S 0.16 tolerated(0.35) benign(0.014) TCGA-3N-A9WD-06 4 36134941 36134941 C T ARAP2 Missense_Mutation p.G1112S 0.18 deleterious(0.02) benign(0.424) TCGA-3N-A9WD-06 4 38104651 38104651 G A TBC1D1 Nonsense_Mutation p.W810* 0.19 TCGA-3N-A9WD-06 4 38798172 38798172 C T TLR1 Missense_Mutation p.E761K 0.29 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 4 39269650 39269650 G A WDR19 Silent p.L1099L 0.27 TCGA-3N-A9WD-06 4 41984594 41984594 G A DCAF4L1 Nonsense_Mutation p.W262* 0.20 TCGA-3N-A9WD-06 4 42592838 42592838 G A ATP8A1 Silent p.L172L 0.16 TCGA-3N-A9WD-06 4 43032575 43032575 G A GRXCR1 3'UTR 0.27 TCGA-3N-A9WD-06 4 44177235 44177235 C T KCTD8 Missense_Mutation p.E332K 0.13 tolerated(0.42) benign(0.002) TCGA-3N-A9WD-06 4 46053463 46053463 C T GABRG1 Missense_Mutation p.R370K 0.26 tolerated(1) benign(0.003) TCGA-3N-A9WD-06 4 46252598 46252598 C T GABRA2 Missense_Mutation p.M361I 0.14 tolerated(0.66) benign(0.001) TCGA-3N-A9WD-06 4 46305585 46305585 T A GABRA2 Missense_Mutation p.I250F 0.30 deleterious(0) probably_damaging(0.952) TCGA-3N-A9WD-06 4 46390828 46390828 G A GABRA2 Intron 0.17 TCGA-3N-A9WD-06 4 47408811 47408811 T A GABRB1 Missense_Mutation p.F316L 0.16 deleterious(0) probably_damaging(0.958) TCGA-3N-A9WD-06 4 48545930 48545930 G A FRYL Missense_Mutation p.S1829F 0.33 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 4 49019297 49019297 G A CWH43 Silent p.L406L 0.14 TCGA-3N-A9WD-06 4 49040131 49040131 G A CWH43 Silent p.L579L 0.17 TCGA-3N-A9WD-06 4 49063848 49063848 G A CWH43 Missense_Mutation p.G681R 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-3N-A9WD-06 4 52861023 52861023 C T LRRC66 Missense_Mutation p.R722K 0.22 deleterious(0.02) possibly_damaging(0.873) TCGA-3N-A9WD-06 4 52936040 52936040 C T SPATA18 Missense_Mutation p.S159F 0.23 deleterious(0) benign(0.144) TCGA-3N-A9WD-06 4 52945937 52945937 C T SPATA18 Missense_Mutation p.P403S 0.19 deleterious(0) probably_damaging(0.986) TCGA-3N-A9WD-06 4 57194608 57194608 T C KIAA1211 3'UTR 0.22 TCGA-3N-A9WD-06 4 62758580 62758580 G A LPHN3 Missense_Mutation p.E495K 0.36 tolerated(0.1) benign(0.042) TCGA-3N-A9WD-06 4 65147214 65147214 G A TECRL Missense_Mutation p.S299L 0.21 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 4 69403365 69403365 C T UGT2B17 Missense_Mutation p.G524E 0.22 tolerated(0.14) possibly_damaging(0.885) TCGA-3N-A9WD-06 4 70079978 70079978 G A UGT2B11 Missense_Mutation p.P155S 0.21 deleterious(0.05) probably_damaging(1) TCGA-3N-A9WD-06 4 70146513 70146513 G A UGT2B28 Missense_Mutation p.D99N 0.12 tolerated(0.79) benign(0.008) TCGA-3N-A9WD-06 4 70351109 70351109 C T UGT2B4 Missense_Mutation p.G376E 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-3N-A9WD-06 4 70505048 70505048 A C UGT2A2 Missense_Mutation p.I104S 0.21 tolerated(0.13) benign(0.006) TCGA-3N-A9WD-06 4 70721113 70721113 C T SULT1E1 Missense_Mutation p.M59I 0.09 deleterious(0.01) benign(0.178) TCGA-3N-A9WD-06 4 71232523 71232523 C T SMR3A Missense_Mutation p.P73S 0.31 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WD-06 4 71232664 71232664 C T SMR3A Missense_Mutation p.P120S 0.10 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WD-06 4 71508905 71508905 C G ENAM Missense_Mutation p.P588A 0.21 tolerated(0.09) benign(0.329) TCGA-3N-A9WD-06 4 71508906 71508906 C T ENAM Missense_Mutation p.P588L 0.22 tolerated(0.35) benign(0.22) TCGA-3N-A9WD-06 4 74313179 74313179 G A AFP Missense_Mutation p.E282K 0.14 tolerated(0.28) benign(0.026) TCGA-3N-A9WD-06 4 74853878 74853878 G A PPBP 5'UTR 0.48 TCGA-3N-A9WD-06 4 76813087 76813087 C T PPEF2 Missense_Mutation p.V34M 0.13 tolerated(0.54) benign(0.008) TCGA-3N-A9WD-06 4 76902587 76902587 G A SDAD1 Missense_Mutation p.P78S 0.22 tolerated(0.11) probably_damaging(0.934) TCGA-3N-A9WD-06 4 77134668 77134668 C T SCARB2 Missense_Mutation p.G10E 0.25 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 4 77660738 77660738 C T SHROOM3 Missense_Mutation p.P471L 0.20 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 4 79321933 79321933 C T FRAS1 Missense_Mutation p.P1341S 0.38 benign(0.046) TCGA-3N-A9WD-06 4 81791162 81791162 C T C4orf22 Missense_Mutation p.R134C 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-3N-A9WD-06 4 83278003 83278003 G C HNRNPD Missense_Mutation p.Q267E 0.22 deleterious(0.01) possibly_damaging(0.869) TCGA-3N-A9WD-06 4 88967809 88967809 C T PKD2 Silent p.F445F 0.20 TCGA-3N-A9WD-06 4 91229997 91229997 C T CCSER1 Missense_Mutation p.H188Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-3N-A9WD-06 4 91549282 91549282 G A CCSER1 Missense_Mutation p.E611K 0.17 deleterious(0) probably_damaging(0.994) TCGA-3N-A9WD-06 4 91701701 91701701 G A CCSER1 Intron 0.22 TCGA-3N-A9WD-06 4 94316836 94316836 G A GRID2 Missense_Mutation p.V442I 0.17 deleterious(0.03) benign(0.019) TCGA-3N-A9WD-06 4 96762471 96762471 G A PDHA2 3'UTR 0.09 TCGA-3N-A9WD-06 5 100231392 100231392 A G ST8SIA4 Missense_Mutation p.W71R 0.20 probably_damaging(0.969) TCGA-3N-A9WD-06 5 101593679 101593679 C T SLCO4C1 Missense_Mutation p.G414E 0.17 deleterious(0) probably_damaging(0.977) TCGA-3N-A9WD-06 5 101593680 101593680 C T SLCO4C1 Missense_Mutation p.G414R 0.19 deleterious(0) possibly_damaging(0.893) TCGA-3N-A9WD-06 5 110428045 110428045 T G WDR36 Missense_Mutation p.V20G 0.24 deleterious_low_confidence(0.02) benign(0) TCGA-3N-A9WD-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.12 TCGA-3N-A9WD-06 5 111540124 111540124 G A EPB41L4A Nonsense_Mutation p.R442* 0.17 TCGA-3N-A9WD-06 5 124079995 124079995 G A ZNF608 Missense_Mutation p.P230S 0.18 tolerated(0.67) benign(0.007) TCGA-3N-A9WD-06 5 131719945 131719945 C T SLC22A5 Missense_Mutation p.L202F 0.16 tolerated(0.43) benign(0.108) TCGA-3N-A9WD-06 5 135273233 135273233 G A FBXL21 RNA 0.15 TCGA-3N-A9WD-06 5 13719176 13719176 C T DNAH5 Missense_Mutation p.G4105E 0.13 probably_damaging(0.982) TCGA-3N-A9WD-06 5 13793757 13793757 G A DNAH5 Silent p.I2697I 0.19 TCGA-3N-A9WD-06 5 13820588 13820588 G A DNAH5 Silent p.I2236I 0.14 TCGA-3N-A9WD-06 5 140181344 140181344 G A PCDHA3 Missense_Mutation p.E188K 0.26 tolerated_low_confidence(0.52) benign(0.007) TCGA-3N-A9WD-06 5 140182283 140182283 G A PCDHA3 Missense_Mutation p.E501K 0.17 deleterious_low_confidence(0.01) benign(0.381) TCGA-3N-A9WD-06 5 140308660 140308660 G A PCDHAC1 Missense_Mutation p.G728E 0.23 tolerated(1) benign(0.002) TCGA-3N-A9WD-06 5 140348182 140348182 G A PCDHAC2 Missense_Mutation p.D611N 0.20 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 5 140724528 140724528 G A PCDHGA3 Missense_Mutation p.E310K 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-3N-A9WD-06 5 140731297 140731297 T G PCDHGB1 Missense_Mutation p.S490R 0.28 deleterious(0.04) probably_damaging(0.925) TCGA-3N-A9WD-06 5 140744394 140744394 C T PCDHGA5 Missense_Mutation p.S166F 0.26 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-3N-A9WD-06 5 140764419 140764419 G A PCDHGA7 Silent p.Q651Q 0.30 TCGA-3N-A9WD-06 5 140957070 140957070 G A DIAPH1 Missense_Mutation p.L418F 0.20 unknown(0) TCGA-3N-A9WD-06 5 141305011 141305011 A G KIAA0141 Silent p.P61P 0.19 TCGA-3N-A9WD-06 5 145442026 145442026 C T SH3RF2 Missense_Mutation p.P651L 0.17 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 5 145647302 145647302 G A RBM27 Missense_Mutation p.D808N 0.21 deleterious(0.01) possibly_damaging(0.808) TCGA-3N-A9WD-06 5 145834712 145834712 A G TCERG1 Silent p.P51P 0.18 TCGA-3N-A9WD-06 5 147019284 147019284 A G JAKMIP2 Silent p.L481L 0.19 TCGA-3N-A9WD-06 5 147040544 147040544 G A JAKMIP2 Silent p.I198I 0.16 TCGA-3N-A9WD-06 5 147582697 147582697 C T SPINK6 Missense_Mutation p.A13V 0.11 tolerated(0.17) benign(0.001) TCGA-3N-A9WD-06 5 147649649 147649649 C T SPINK13 Missense_Mutation p.P5L 0.15 deleterious_low_confidence(0.01) benign(0.099) TCGA-3N-A9WD-06 5 147649668 147649668 C T SPINK13 Silent p.F11F 0.24 TCGA-3N-A9WD-06 5 1501587 1501587 G A LPCAT1 Silent p.A89A 0.29 TCGA-3N-A9WD-06 5 150275220 150275220 C T ZNF300 Silent p.G543G 0.21 TCGA-3N-A9WD-06 5 150943018 150943018 C T FAT2 Missense_Mutation p.E1148K 0.24 probably_damaging(1) TCGA-3N-A9WD-06 5 150945436 150945436 G A FAT2 Silent p.I1019I 0.28 TCGA-3N-A9WD-06 5 150946076 150946076 A T FAT2 Missense_Mutation p.L806Q 0.25 probably_damaging(0.997) TCGA-3N-A9WD-06 5 151784362 151784362 C T NMUR2 Missense_Mutation p.E105K 0.22 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 5 153144142 153144142 G A GRIA1 Missense_Mutation p.E668K 0.27 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 5 153190735 153190735 C T GRIA1 Missense_Mutation p.P901S 0.21 deleterious_low_confidence(0.02) benign(0.049) TCGA-3N-A9WD-06 5 156593126 156593126 C T FAM71B Missense_Mutation p.M18I 0.33 deleterious(0.05) benign(0.091) TCGA-3N-A9WD-06 5 156770231 156770231 G A FNDC9 Missense_Mutation p.S105F 0.23 deleterious(0.04) possibly_damaging(0.641) TCGA-3N-A9WD-06 5 158526513 158526513 C T EBF1 5'UTR 0.13 TCGA-3N-A9WD-06 5 160113098 160113098 C T ATP10B Missense_Mutation p.R153Q 0.16 tolerated(0.33) benign(0.004) TCGA-3N-A9WD-06 5 160721432 160721432 C T GABRB2 Missense_Mutation p.D399N 0.15 tolerated(0.09) possibly_damaging(0.833) TCGA-3N-A9WD-06 5 16091050 16091050 G A MARCH11 Silent p.I278I 0.11 TCGA-3N-A9WD-06 5 161324183 161324183 A C GABRA1 Missense_Mutation p.T376P 0.24 tolerated(0.58) benign(0.003) TCGA-3N-A9WD-06 5 161569218 161569218 G A GABRG2 Missense_Mutation p.G313E 0.19 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 5 162940644 162940644 G T MAT2B Silent p.V114V 0.10 TCGA-3N-A9WD-06 5 167673774 167673774 C T TENM2 Silent p.L1944L 0.18 TCGA-3N-A9WD-06 5 169122807 169122807 G A DOCK2 Missense_Mutation p.D282N 0.24 deleterious(0.01) possibly_damaging(0.803) TCGA-3N-A9WD-06 5 172341880 172341880 C T ERGIC1 Intron 0.25 TCGA-3N-A9WD-06 5 177151153 177151153 C T FAM153A Nonsense_Mutation p.W298* 0.29 TCGA-3N-A9WD-06 5 178359348 178359348 G A ZFP2 Missense_Mutation p.R345Q 0.19 tolerated(1) benign(0.351) TCGA-3N-A9WD-06 5 178359349 178359349 G A ZFP2 Silent p.R345R 0.20 TCGA-3N-A9WD-06 5 180056775 180056775 T A FLT4 Missense_Mutation p.E246V 0.18 deleterious(0) probably_damaging(0.976) TCGA-3N-A9WD-06 5 19483414 19483414 G A CDH18 Silent p.L626L 0.18 TCGA-3N-A9WD-06 5 23522962 23522962 G A PRDM9 Missense_Mutation p.E284K 0.17 tolerated(0.07) benign(0.394) TCGA-3N-A9WD-06 5 32053903 32053903 G A PDZD2 Missense_Mutation p.R605Q 0.15 tolerated(0.85) probably_damaging(1) TCGA-3N-A9WD-06 5 34945081 34945081 C T DNAJC21 Missense_Mutation p.P365S 0.14 tolerated(0.82) benign(0.002) TCGA-3N-A9WD-06 5 35065993 35065993 C T PRLR Missense_Mutation p.S356N 0.20 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 5 35072709 35072709 G A PRLR Nonsense_Mutation p.R171* 0.17 TCGA-3N-A9WD-06 5 35873664 35873664 C T IL7R Missense_Mutation p.S207F 0.31 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 5 38370407 38370407 C T EGFLAM Silent p.F185F 0.07 TCGA-3N-A9WD-06 5 38506106 38506106 G A LIFR Nonsense_Mutation p.Q398* 0.23 TCGA-3N-A9WD-06 5 41019062 41019062 G A MROH2B Missense_Mutation p.R834W 0.14 deleterious(0) probably_damaging(0.959) TCGA-3N-A9WD-06 5 41065475 41065475 C T MROH2B Missense_Mutation p.E107K 0.29 tolerated(0.26) possibly_damaging(0.754) TCGA-3N-A9WD-06 5 41158854 41158854 C T C6 Missense_Mutation p.M630I 0.27 tolerated(0.48) benign(0) TCGA-3N-A9WD-06 5 41159289 41159289 G A C6 Missense_Mutation p.S584L 0.19 tolerated(0.22) benign(0.36) TCGA-3N-A9WD-06 5 41382628 41382628 C T PLCXD3 Missense_Mutation p.D38N 0.18 tolerated(0.08) possibly_damaging(0.601) TCGA-3N-A9WD-06 5 42719164 42719164 G A GHR Missense_Mutation p.E519K 0.18 tolerated(0.08) benign(0.256) TCGA-3N-A9WD-06 5 45262135 45262135 C T HCN1 Missense_Mutation p.R854Q 0.16 tolerated_low_confidence(0.07) probably_damaging(0.953) TCGA-3N-A9WD-06 5 49724007 49724007 G A EMB Missense_Mutation p.S56F 0.08 tolerated(0.08) benign(0.025) TCGA-3N-A9WD-06 5 50118202 50118202 G A PARP8 Missense_Mutation p.D610N 0.11 deleterious(0.04) possibly_damaging(0.564) TCGA-3N-A9WD-06 5 50680554 50680554 G A ISL1 Missense_Mutation p.D70N 0.19 deleterious(0.01) possibly_damaging(0.812) TCGA-3N-A9WD-06 5 50689488 50689488 G A ISL1 3'UTR 0.19 TCGA-3N-A9WD-06 5 52361731 52361731 G A ITGA2 Missense_Mutation p.D623N 0.23 tolerated(0.08) probably_damaging(0.983) TCGA-3N-A9WD-06 5 65073327 65073327 G A NLN Missense_Mutation p.R175K 0.17 deleterious(0.01) benign(0.351) TCGA-3N-A9WD-06 5 71756700 71756700 G A ZNF366 Silent p.P208P 0.26 TCGA-3N-A9WD-06 5 73207312 73207312 G A ARHGEF28 Silent p.S1620S 0.33 TCGA-3N-A9WD-06 5 74865197 74865197 C T POLK Silent p.S96S 0.12 TCGA-3N-A9WD-06 5 76714054 76714054 G A PDE8B Missense_Mutation p.G638R 0.20 tolerated(0.33) probably_damaging(0.936) TCGA-3N-A9WD-06 5 78351690 78351690 C T DMGDH Silent p.K106K 0.31 TCGA-3N-A9WD-06 5 79029406 79029406 C T CMYA5 Silent p.F1606F 0.19 TCGA-3N-A9WD-06 5 79029584 79029584 G A CMYA5 Missense_Mutation p.D1666N 0.09 benign(0.173) TCGA-3N-A9WD-06 5 79034474 79034474 G A CMYA5 Missense_Mutation p.E3296K 0.12 benign(0.092) TCGA-3N-A9WD-06 5 83362291 83362291 C T EDIL3 Silent p.V262V 0.11 TCGA-3N-A9WD-06 5 840686 840686 G A ZDHHC11 Silent p.I236I 0.22 TCGA-3N-A9WD-06 5 89988445 89988445 T G GPR98 Missense_Mutation p.D2325E 0.54 probably_damaging(0.935) TCGA-3N-A9WD-06 5 94230380 94230380 C T MCTP1 Missense_Mutation p.E605K 0.27 deleterious(0) possibly_damaging(0.881) TCGA-3N-A9WD-06 6 100841642 100841642 C T SIM1 Missense_Mutation p.D431N 0.27 tolerated(0.43) benign(0.169) TCGA-3N-A9WD-06 6 106543543 106543543 C T PRDM1 Silent p.P115P 0.26 TCGA-3N-A9WD-06 6 107008710 107008710 G A AIM1 Missense_Mutation p.G1555E 0.17 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 6 109993210 109993210 T G AK9 Silent p.S81S 0.17 TCGA-3N-A9WD-06 6 117663603 117663603 T C ROS1 Silent p.L1543L 0.09 TCGA-3N-A9WD-06 6 117710844 117710844 G A ROS1 Silent p.V476V 0.17 TCGA-3N-A9WD-06 6 127797362 127797362 C T SOGA3 Silent p.R603R 0.18 TCGA-3N-A9WD-06 6 128312525 128312525 C T PTPRK Missense_Mutation p.E971K 0.40 deleterious(0) probably_damaging(0.988) TCGA-3N-A9WD-06 6 128326363 128326363 G A PTPRK Missense_Mutation p.A787V 0.09 tolerated(0.15) benign(0.006) TCGA-3N-A9WD-06 6 130762418 130762418 C T TMEM200A Missense_Mutation p.S284F 0.12 deleterious(0) probably_damaging(0.997) TCGA-3N-A9WD-06 6 130762419 130762419 C T TMEM200A Silent p.S284S 0.12 TCGA-3N-A9WD-06 6 131917198 131917198 G A MED23 Nonsense_Mutation p.R962* 0.08 TCGA-3N-A9WD-06 6 136599768 136599768 C T BCLAF1 Missense_Mutation p.G84E 0.09 deleterious_low_confidence(0) unknown(0) TCGA-3N-A9WD-06 6 138202176 138202176 C T TNFAIP3 Missense_Mutation p.S698L 0.08 tolerated(0.1) benign(0.003) TCGA-3N-A9WD-06 6 139094874 139094874 G A CCDC28A Silent p.G21G 0.18 TCGA-3N-A9WD-06 6 144508106 144508106 T G STX11 Silent p.A114A 0.28 TCGA-3N-A9WD-06 6 150157251 150157251 G A LRP11 Missense_Mutation p.P408S 0.16 tolerated(0.07) benign(0.091) TCGA-3N-A9WD-06 6 152201887 152201887 A C ESR1 Missense_Mutation p.E247D 0.14 deleterious(0.02) benign(0.247) TCGA-3N-A9WD-06 6 152763330 152763330 G A SYNE1 Silent p.I1296I 0.24 TCGA-3N-A9WD-06 6 152949456 152949456 G A SYNE1 Missense_Mutation p.S4F 0.36 benign(0.016) TCGA-3N-A9WD-06 6 161016504 161016504 C T LPA Missense_Mutation p.M1117I 0.22 tolerated(0.45) benign(0.02) TCGA-3N-A9WD-06 6 166845899 166845899 G A RPS6KA2 Missense_Mutation p.T479I 0.42 deleterious(0) possibly_damaging(0.857) TCGA-3N-A9WD-06 6 24551699 24551699 C T KIAA0319 Missense_Mutation p.M1001I 0.18 tolerated(0.76) benign(0.004) TCGA-3N-A9WD-06 6 25726437 25726437 C T HIST1H2AA Missense_Mutation p.G107R 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-3N-A9WD-06 6 25777193 25777193 G A SLC17A4 Intron 0.22 TCGA-3N-A9WD-06 6 28478639 28478639 C T GPX6 Missense_Mutation p.G44R 0.20 tolerated(0.15) benign(0.207) TCGA-3N-A9WD-06 6 28540475 28540475 C T SCAND3 Missense_Mutation p.R1064Q 0.21 tolerated_low_confidence(0.29) benign(0.001) TCGA-3N-A9WD-06 6 29429948 29429948 C T OR2H1 Silent p.I134I 0.17 TCGA-3N-A9WD-06 6 29556249 29556249 C T OR2H2 Silent p.V176V 0.11 TCGA-3N-A9WD-06 6 29640643 29640643 G A ZFP57 Silent p.F415F 0.23 TCGA-3N-A9WD-06 6 31079307 31079307 G A C6orf15 Missense_Mutation p.R277W 0.23 tolerated(0.09) probably_damaging(0.942) TCGA-3N-A9WD-06 6 31839108 31839108 G A SLC44A4 Silent p.S228S 0.31 TCGA-3N-A9WD-06 6 32138192 32138192 G A AGPAT1 Intron 0.29 TCGA-3N-A9WD-06 6 32334079 32334079 C T C6orf10 Missense_Mutation p.G56E 0.12 deleterious(0) benign(0.42) TCGA-3N-A9WD-06 6 33647786 33647786 C T ITPR3 Missense_Mutation p.S1367F 0.12 deleterious(0.01) possibly_damaging(0.862) TCGA-3N-A9WD-06 6 34101184 34101184 G A GRM4 Silent p.S30S 0.16 TCGA-3N-A9WD-06 6 34101185 34101185 G A GRM4 Missense_Mutation p.S30F 0.15 tolerated(0.17) benign(0.064) TCGA-3N-A9WD-06 6 36711493 36711493 C T CPNE5 Silent p.G512G 0.19 TCGA-3N-A9WD-06 6 37250024 37250024 C T TBC1D22B Missense_Mutation p.P162L 0.20 deleterious(0.03) benign(0.015) TCGA-3N-A9WD-06 6 37250121 37250121 C T TBC1D22B Silent p.S194S 0.25 TCGA-3N-A9WD-06 6 37438822 37438822 C T CMTR1 Silent p.L511L 0.27 TCGA-3N-A9WD-06 6 38718278 38718278 C T DNAH8 Silent p.I223I 0.21 TCGA-3N-A9WD-06 6 4099264 4099264 G A C6orf201 Missense_Mutation p.R39K 0.21 tolerated(0.53) benign(0.058) TCGA-3N-A9WD-06 6 44116601 44116601 C T TMEM63B Silent p.L444L 0.25 TCGA-3N-A9WD-06 6 45296123 45296123 G A RUNX2 5'UTR 0.25 TCGA-3N-A9WD-06 6 46801039 46801039 G A MEP1A Missense_Mutation p.R458Q 0.12 tolerated(0.05) probably_damaging(0.975) TCGA-3N-A9WD-06 6 47682288 47682288 C T GPR115 Missense_Mutation p.S436L 0.15 deleterious(0) possibly_damaging(0.886) TCGA-3N-A9WD-06 6 49460014 49460014 C T CENPQ 3'UTR 0.17 TCGA-3N-A9WD-06 6 49660571 49660571 G A CRISP2 Missense_Mutation p.S216F 0.15 deleterious(0.01) possibly_damaging(0.757) TCGA-3N-A9WD-06 6 49704172 49704172 C T CRISP3 Missense_Mutation p.E64K 0.09 tolerated(0.09) benign(0.142) TCGA-3N-A9WD-06 6 49754704 49754704 C T PGK2 Missense_Mutation p.R66Q 0.18 deleterious(0.03) possibly_damaging(0.602) TCGA-3N-A9WD-06 6 53989384 53989384 C T MLIP Silent p.F111F 0.16 TCGA-3N-A9WD-06 6 55216248 55216248 G A GFRAL Missense_Mutation p.D190N 0.17 deleterious(0.04) probably_damaging(0.966) TCGA-3N-A9WD-06 6 70098595 70098595 G A BAI3 Missense_Mutation p.E1461K 0.18 tolerated(1) benign(0.049) TCGA-3N-A9WD-06 6 73879492 73879492 G A KCNQ5 Missense_Mutation p.D517N 0.29 deleterious(0.05) benign(0.155) TCGA-3N-A9WD-06 6 74073372 74073372 C T KHDC3L Missense_Mutation p.S148L 0.19 deleterious(0.03) benign(0.027) TCGA-3N-A9WD-06 6 76022921 76022921 C T FILIP1 Missense_Mutation p.R876K 0.06 tolerated(1) benign(0.003) TCGA-3N-A9WD-06 6 76024872 76024872 C T FILIP1 Missense_Mutation p.E226K 0.21 deleterious(0) possibly_damaging(0.814) TCGA-3N-A9WD-06 6 76728501 76728501 G A IMPG1 Silent p.F247F 0.23 TCGA-3N-A9WD-06 6 84311002 84311002 C T SNAP91 Missense_Mutation p.D438N 0.12 deleterious(0.01) unknown(0) TCGA-3N-A9WD-06 7 100187965 100187965 G A FBXO24 Missense_Mutation p.A141T 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.483) TCGA-3N-A9WD-06 7 100346057 100346057 C T ZAN Missense_Mutation p.H405Y 0.58 possibly_damaging(0.886) TCGA-3N-A9WD-06 7 100777090 100777090 C T SERPINE1 Missense_Mutation p.A272V 0.35 tolerated(0.09) benign(0.236) TCGA-3N-A9WD-06 7 103151389 103151389 C T RELN Missense_Mutation p.G2728D 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-3N-A9WD-06 7 103290827 103290827 C T RELN Nonsense_Mutation p.W632* 0.22 TCGA-3N-A9WD-06 7 103322649 103322649 G A RELN Silent p.F401F 0.27 TCGA-3N-A9WD-06 7 116411929 116411929 G A MET Missense_Mutation p.D990N 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-3N-A9WD-06 7 11675775 11675775 C T THSD7A Missense_Mutation p.G335E 0.12 deleterious(0) possibly_damaging(0.703) TCGA-3N-A9WD-06 7 11675862 11675862 C T THSD7A Missense_Mutation p.R306K 0.26 tolerated(0.12) benign(0.005) TCGA-3N-A9WD-06 7 119914743 119914743 G A KCND2 Nonsense_Mutation p.W19* 0.18 TCGA-3N-A9WD-06 7 120428825 120428825 C G TSPAN12 Missense_Mutation p.A247P 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-3N-A9WD-06 7 120428827 120428827 C T TSPAN12 Nonsense_Mutation p.W246* 0.14 TCGA-3N-A9WD-06 7 121652406 121652406 C T PTPRZ1 Silent p.S1102S 0.29 TCGA-3N-A9WD-06 7 121676659 121676659 C T PTPRZ1 Missense_Mutation p.H1764Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-3N-A9WD-06 7 122774475 122774475 G A SLC13A1 Silent p.F307F 0.22 TCGA-3N-A9WD-06 7 123092874 123092874 C T IQUB Missense_Mutation p.E767K 0.24 deleterious_low_confidence(0.04) benign(0.243) TCGA-3N-A9WD-06 7 128588701 128588701 G A IRF5 Silent p.R458R 0.21 TCGA-3N-A9WD-06 7 131883320 131883320 G A PLXNA4 Missense_Mutation p.R888C 0.23 deleterious(0.05) possibly_damaging(0.51) TCGA-3N-A9WD-06 7 140380882 140380882 C T ADCK2 Missense_Mutation p.P417L 0.11 deleterious(0) probably_damaging(0.909) TCGA-3N-A9WD-06 7 141629950 141629950 G A CLEC5A Missense_Mutation p.S174L 0.18 tolerated(0.77) benign(0.307) TCGA-3N-A9WD-06 7 141720859 141720859 G A MGAM Silent p.Q178Q 0.21 TCGA-3N-A9WD-06 7 141740561 141740561 G A MGAM Missense_Mutation p.E805K 0.20 tolerated(0.37) benign(0.01) TCGA-3N-A9WD-06 7 141795419 141795419 C T MGAM Silent p.L1609L 0.22 TCGA-3N-A9WD-06 7 142162083 142162083 C T TRBV6-6 Silent p.L64L 0.21 TCGA-3N-A9WD-06 7 142364263 142364263 C T TRBV24-1 Silent p.A10A 0.24 TCGA-3N-A9WD-06 7 142606682 142606682 G A TRPV5 Silent p.F623F 0.25 TCGA-3N-A9WD-06 7 142622604 142622604 C T TRPV5 Intron 0.29 TCGA-3N-A9WD-06 7 143453526 143453526 C T CTAGE6 Missense_Mutation p.R409Q 0.09 tolerated(0.08) benign(0.22) TCGA-3N-A9WD-06 7 143955980 143955980 C A OR2A7 Nonsense_Mutation p.G248* 0.03 TCGA-3N-A9WD-06 7 143955981 143955981 A T OR2A7 Silent p.I247I 0.03 TCGA-3N-A9WD-06 7 150324821 150324821 T A GIMAP6 Nonsense_Mutation p.K289* 0.06 TCGA-3N-A9WD-06 7 150327170 150327170 C T GIMAP6 Missense_Mutation p.D21N 0.18 deleterious(0.05) benign(0.075) TCGA-3N-A9WD-06 7 150390167 150390167 G A GIMAP2 Missense_Mutation p.A265T 0.11 tolerated(0.12) benign(0.273) TCGA-3N-A9WD-06 7 150490263 150490263 G A TMEM176B Silent p.F171F 0.24 TCGA-3N-A9WD-06 7 153584789 153584789 C T DPP6 Silent p.I7I 0.25 TCGA-3N-A9WD-06 7 158325420 158325420 C T PTPRN2 Intron 0.17 TCGA-3N-A9WD-06 7 22186517 22186517 C T RAPGEF5 Missense_Mutation p.E516K 0.19 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 7 22534433 22534433 C T STEAP1B Nonsense_Mutation p.W14* 0.23 TCGA-3N-A9WD-06 7 27148187 27148187 G A HOXA3 Silent p.L227L 0.25 TCGA-3N-A9WD-06 7 30793443 30793443 C T INMT Missense_Mutation p.S84F 0.24 deleterious(0) probably_damaging(0.981) TCGA-3N-A9WD-06 7 30825462 30825462 C A FAM188B Missense_Mutation p.P173T 0.29 tolerated(0.35) benign(0.001) TCGA-3N-A9WD-06 7 36396569 36396569 G A KIAA0895 Missense_Mutation p.P270L 0.15 deleterious(0) possibly_damaging(0.616) TCGA-3N-A9WD-06 7 36438862 36438862 C T ANLN Missense_Mutation p.S116F 0.22 deleterious(0.02) benign(0.146) TCGA-3N-A9WD-06 7 37264582 37264582 G A ELMO1 Silent p.S201S 0.20 TCGA-3N-A9WD-06 7 37901739 37901739 G A NME8 Missense_Mutation p.R127Q 0.26 deleterious(0) probably_damaging(0.989) TCGA-3N-A9WD-06 7 44555504 44555504 C T NPC1L1 Missense_Mutation p.A1259T 0.29 deleterious(0.01) possibly_damaging(0.483) TCGA-3N-A9WD-06 7 45011770 45011770 G A MYO1G Missense_Mutation p.P225S 0.17 tolerated(0.06) benign(0.43) TCGA-3N-A9WD-06 7 45650025 45650025 G A ADCY1 Missense_Mutation p.M279I 0.19 deleterious(0.01) benign(0.096) TCGA-3N-A9WD-06 7 5540237 5540237 G A FBXL18 Silent p.L555L 0.17 TCGA-3N-A9WD-06 7 6006692 6006692 G A RSPH10B Missense_Mutation p.P19L 0.16 deleterious(0.02) possibly_damaging(0.856) TCGA-3N-A9WD-06 7 72413567 72413567 C T POM121 Missense_Mutation p.P747L 0.18 tolerated(0.26) benign(0) TCGA-3N-A9WD-06 7 73123006 73123006 G C STX1A Missense_Mutation p.R41G 0.19 deleterious(0.01) probably_damaging(1) TCGA-3N-A9WD-06 7 81381491 81381491 G A HGF Silent p.F190F 0.25 TCGA-3N-A9WD-06 7 82784440 82784440 G A PCLO Missense_Mutation p.S506L 0.22 possibly_damaging(0.504) TCGA-3N-A9WD-06 7 83631291 83631291 C T SEMA3A Missense_Mutation p.E478K 0.41 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 7 86537039 86537039 C T KIAA1324L Silent p.V835V 0.15 TCGA-3N-A9WD-06 7 87145898 87145898 G A ABCB1 Missense_Mutation p.S1004L 0.28 deleterious(0.03) benign(0.174) TCGA-3N-A9WD-06 7 88963626 88963626 C T ZNF804B Missense_Mutation p.L444F 0.11 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 7 89894668 89894668 C T C7orf63 Missense_Mutation p.T137I 0.19 tolerated(0.18) benign(0.027) TCGA-3N-A9WD-06 7 90042603 90042603 C T CLDN12 Missense_Mutation p.P205S 0.28 tolerated(0.18) probably_damaging(0.999) TCGA-3N-A9WD-06 7 92762345 92762345 C T SAMD9L Silent p.G980G 0.15 TCGA-3N-A9WD-06 7 92963432 92963432 G A CCDC132 Missense_Mutation p.E661K 0.19 tolerated(0.7) benign(0.099) TCGA-3N-A9WD-06 7 94037678 94037678 C T COL1A2 Missense_Mutation p.P242S 0.23 unknown(0) TCGA-3N-A9WD-06 7 99447268 99447268 G A CYP3A43 Missense_Mutation p.M207I 0.27 tolerated(1) benign(0) TCGA-3N-A9WD-06 8 103312363 103312363 T A UBR5 Missense_Mutation p.M991L 0.15 tolerated(0.11) possibly_damaging(0.448) TCGA-3N-A9WD-06 8 104898268 104898268 G A RIMS2 Missense_Mutation p.D481N 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-3N-A9WD-06 8 106811068 106811068 G A ZFPM2 Missense_Mutation p.E286K 0.36 tolerated(0.18) benign(0.038) TCGA-3N-A9WD-06 8 108296943 108296943 C T ANGPT1 Missense_Mutation p.R391K 0.38 tolerated(0.63) benign(0.046) TCGA-3N-A9WD-06 8 109796732 109796732 G A TMEM74 Missense_Mutation p.P199L 0.43 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 8 110455931 110455931 A G PKHD1L1 Missense_Mutation p.S1531G 0.32 tolerated(0.24) benign(0.062) TCGA-3N-A9WD-06 8 118184935 118184935 C T SLC30A8 3'UTR 0.41 TCGA-3N-A9WD-06 8 124360471 124360471 G A ATAD2 Missense_Mutation p.P617S 0.18 deleterious(0) benign(0.358) TCGA-3N-A9WD-06 8 124663914 124663914 G A KLHL38 Missense_Mutation p.P418L 0.28 tolerated(0.12) benign(0.32) TCGA-3N-A9WD-06 8 124693282 124693282 C T ANXA13 3'UTR 0.39 TCGA-3N-A9WD-06 8 125551321 125551321 G A TATDN1 5'UTR 0.15 TCGA-3N-A9WD-06 8 131792714 131792714 G A ADCY8 Silent p.N1226N 0.43 TCGA-3N-A9WD-06 8 131792918 131792918 G A ADCY8 Silent p.I1158I 0.09 TCGA-3N-A9WD-06 8 133053895 133053895 G A OC90 Missense_Mutation p.P74L 0.35 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 8 133141804 133141804 G A KCNQ3 Missense_Mutation p.S775F 0.33 deleterious(0.03) probably_damaging(0.936) TCGA-3N-A9WD-06 8 134233036 134233036 G A WISP1 Missense_Mutation p.D188N 0.36 tolerated(0.21) benign(0.015) TCGA-3N-A9WD-06 8 139164169 139164169 C T FAM135B Missense_Mutation p.G850E 0.11 tolerated(0.34) benign(0.221) TCGA-3N-A9WD-06 8 139255242 139255242 G A FAM135B Silent p.I204I 0.31 TCGA-3N-A9WD-06 8 14412262 14412262 C T SGCZ Silent p.L71L 0.18 TCGA-3N-A9WD-06 8 145770965 145770965 G A ARHGAP39 Missense_Mutation p.P730L 0.11 deleterious(0) possibly_damaging(0.874) TCGA-3N-A9WD-06 8 16026172 16026172 T C MSR1 Missense_Mutation p.Q142R 0.33 tolerated(0.06) probably_damaging(0.99) TCGA-3N-A9WD-06 8 16032789 16032789 G A MSR1 Missense_Mutation p.L42F 0.07 tolerated(0.18) benign(0.013) TCGA-3N-A9WD-06 8 16850534 16850534 G A FGF20 3'UTR 0.05 TCGA-3N-A9WD-06 8 17055919 17055919 C T ZDHHC2 Missense_Mutation p.P158L 0.14 deleterious(0) probably_damaging(0.983) TCGA-3N-A9WD-06 8 22085725 22085725 G T PHYHIP Missense_Mutation p.S49Y 0.33 deleterious(0) possibly_damaging(0.673) TCGA-3N-A9WD-06 8 24199248 24199248 G A ADAM28 Missense_Mutation p.G603E 0.38 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 8 24773183 24773183 C T NEFM Silent p.R382R 0.11 TCGA-3N-A9WD-06 8 24776099 24776099 G A NEFM Missense_Mutation p.E911K 0.35 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-3N-A9WD-06 8 2796221 2796221 G T CSMD1 Missense_Mutation p.N3527K 0.38 benign(0.281) TCGA-3N-A9WD-06 8 2800024 2800024 G A CSMD1 Missense_Mutation p.S3502L 0.22 possibly_damaging(0.508) TCGA-3N-A9WD-06 8 3045393 3045393 G A CSMD1 Missense_Mutation p.S1873L 0.12 probably_damaging(0.996) TCGA-3N-A9WD-06 8 3076793 3076793 G A CSMD1 Silent p.F1552F 0.32 TCGA-3N-A9WD-06 8 3087626 3087626 G A CSMD1 Silent p.A1427A 0.12 TCGA-3N-A9WD-06 8 3224603 3224603 A C CSMD1 Missense_Mutation p.F1022L 0.10 probably_damaging(0.995) TCGA-3N-A9WD-06 8 3267063 3267063 A T CSMD1 Missense_Mutation p.S542R 0.25 benign(0.017) TCGA-3N-A9WD-06 8 39550193 39550193 G A ADAM18 Silent p.G632G 0.18 TCGA-3N-A9WD-06 8 41580685 41580685 C T ANK1 Silent p.E322E 0.15 TCGA-3N-A9WD-06 8 42294533 42294533 G A SLC20A2 Silent p.S499S 0.18 TCGA-3N-A9WD-06 8 42294534 42294534 G A SLC20A2 Missense_Mutation p.S499F 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-3N-A9WD-06 8 42821659 42821659 T C HOOK3 Silent p.L275L 0.33 TCGA-3N-A9WD-06 8 48973294 48973294 T A UBE2V2 Missense_Mutation p.I115N 0.08 deleterious(0) possibly_damaging(0.618) TCGA-3N-A9WD-06 8 52321910 52321910 C T PXDNL Silent p.R758R 0.30 TCGA-3N-A9WD-06 8 55537526 55537526 G A RP1 Missense_Mutation p.D362N 0.43 tolerated(0.21) benign(0.006) TCGA-3N-A9WD-06 8 55537997 55537997 C T RP1 Nonsense_Mutation p.Q519* 0.57 TCGA-3N-A9WD-06 8 56436118 56436118 G A XKR4 Missense_Mutation p.E429K 0.12 deleterious(0) probably_damaging(0.992) TCGA-3N-A9WD-06 8 57353936 57353936 G A PENK Silent p.F233F 0.43 TCGA-3N-A9WD-06 8 62289312 62289312 C T CLVS1 Missense_Mutation p.L202F 0.18 deleterious(0) probably_damaging(0.978) TCGA-3N-A9WD-06 8 63936713 63936713 G A GGH Missense_Mutation p.P178S 0.07 deleterious(0.05) benign(0.373) TCGA-3N-A9WD-06 8 65528704 65528704 G A CYP7B1 Missense_Mutation p.H132Y 0.35 deleterious(0.03) possibly_damaging(0.453) TCGA-3N-A9WD-06 8 67040642 67040642 G A TRIM55 Missense_Mutation p.G91E 0.18 deleterious(0) possibly_damaging(0.842) TCGA-3N-A9WD-06 8 6782288 6782288 C T DEFA6 3'UTR 0.09 TCGA-3N-A9WD-06 8 70964499 70964499 T G PRDM14 Missense_Mutation p.Q510P 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-3N-A9WD-06 8 72229889 72229889 A G EYA1 Silent p.L152L 0.30 TCGA-3N-A9WD-06 8 77616405 77616405 G A ZFHX4 Missense_Mutation p.D28N 0.12 possibly_damaging(0.728) TCGA-3N-A9WD-06 8 81577165 81577165 G A ZNF704 Missense_Mutation p.P271L 0.11 tolerated(0.34) benign(0.002) TCGA-3N-A9WD-06 8 81577166 81577166 G A ZNF704 Missense_Mutation p.P271S 0.11 tolerated(0.27) benign(0.002) TCGA-3N-A9WD-06 8 86389506 86389506 T C CA2 Splice_Site p.X221_splice 0.12 TCGA-3N-A9WD-06 8 93017285 93017285 C T RUNX1T1 Intron 0.19 TCGA-3N-A9WD-06 8 95164318 95164318 G A CDH17 Missense_Mutation p.A525V 0.12 deleterious(0.01) benign(0.315) TCGA-3N-A9WD-06 8 95182741 95182741 C T CDH17 Missense_Mutation p.G317E 0.09 deleterious(0) probably_damaging(0.973) TCGA-3N-A9WD-06 9 104449125 104449125 G A GRIN3A Missense_Mutation p.R353C 0.42 deleterious(0.02) benign(0.386) TCGA-3N-A9WD-06 9 107267331 107267331 C T OR13F1 Missense_Mutation p.S263F 0.48 deleterious(0) possibly_damaging(0.794) TCGA-3N-A9WD-06 9 108126910 108126910 C T SLC44A1 Missense_Mutation p.H388Y 0.41 deleterious(0) possibly_damaging(0.883) TCGA-3N-A9WD-06 9 111625670 111625670 G A ACTL7A Silent p.G356G 0.43 TCGA-3N-A9WD-06 9 114124253 114124255 CAC - KIAA0368 3'UTR 0.50 TCGA-3N-A9WD-06 9 125391197 125391197 G A OR1B1 Silent p.F206F 0.53 TCGA-3N-A9WD-06 9 125424343 125424343 G A OR1L1 Missense_Mutation p.A117T 0.42 tolerated(0.11) benign(0.049) TCGA-3N-A9WD-06 9 125486764 125486764 C T OR1L4 Missense_Mutation p.R166C 0.24 deleterious(0.01) probably_damaging(0.913) TCGA-3N-A9WD-06 9 132630615 132630615 C T USP20 Missense_Mutation p.S341L 0.11 tolerated(0.22) benign(0.075) TCGA-3N-A9WD-06 9 134360462 134360462 C T PRRC2B Missense_Mutation p.S1898F 0.39 deleterious(0.02) possibly_damaging(0.724) TCGA-3N-A9WD-06 9 134360463 134360463 C T PRRC2B Silent p.S1898S 0.33 TCGA-3N-A9WD-06 9 137623360 137623360 G A COL5A1 Missense_Mutation p.E395K 0.28 benign(0.058) TCGA-3N-A9WD-06 9 140970279 140970279 G A CACNA1B Silent p.G1622G 0.42 TCGA-3N-A9WD-06 9 19573435 19573435 C T SLC24A2 Missense_Mutation p.D421N 0.48 tolerated(0.28) benign(0) TCGA-3N-A9WD-06 9 19577017 19577017 C T SLC24A2 Missense_Mutation p.R378K 0.26 tolerated(1) benign(0.001) TCGA-3N-A9WD-06 9 27185503 27185503 G A TEK Silent p.T401T 0.33 TCGA-3N-A9WD-06 9 32544278 32544278 G A TOPORS Missense_Mutation p.P82L 0.49 deleterious(0.01) probably_damaging(0.982) TCGA-3N-A9WD-06 9 35869592 35869592 G A OR13J1 Silent p.I269I 0.31 TCGA-3N-A9WD-06 9 40705518 40705518 C T SPATA31A3 Nonsense_Mutation p.Q1059* 0.32 TCGA-3N-A9WD-06 9 43625459 43625459 C T SPATA31A6 Silent p.R1076R 0.10 TCGA-3N-A9WD-06 9 43625460 43625460 C T SPATA31A6 Missense_Mutation p.R1076K 0.10 deleterious(0.04) probably_damaging(0.974) TCGA-3N-A9WD-06 9 70177701 70177701 T C FOXD4L5 Missense_Mutation p.R95G 0.24 tolerated(0.63) benign(0.057) TCGA-3N-A9WD-06 9 71992355 71992355 C T FAM189A2 Missense_Mutation p.R108C 0.40 tolerated(0.19) possibly_damaging(0.632) TCGA-3N-A9WD-06 9 72521020 72521020 C T C9orf135 Missense_Mutation p.P220S 0.43 tolerated(0.35) benign(0.003) TCGA-3N-A9WD-06 9 8331706 8331706 G A PTPRD Nonsense_Mutation p.Q1804* 0.46 TCGA-3N-A9WD-06 X 10176404 10176404 C T CLCN4 Missense_Mutation p.P388L 0.41 tolerated(0.11) possibly_damaging(0.783) TCGA-3N-A9WD-06 X 104464377 104464377 C T TEX13A Silent p.G167G 0.73 TCGA-3N-A9WD-06 X 105280844 105280844 G A SERPINA7 Missense_Mutation p.S69F 0.61 deleterious(0) probably_damaging(1) TCGA-3N-A9WD-06 X 106331885 106331885 G A RBM41 Silent p.L236L 0.33 TCGA-3N-A9WD-06 X 106841264 106841264 C T FRMPD3 Nonsense_Mutation p.R752* 0.32 TCGA-3N-A9WD-06 X 106841267 106841267 G A FRMPD3 Missense_Mutation p.D753N 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-3N-A9WD-06 X 107170185 107170185 C G MID2 Missense_Mutation p.S697C 0.49 tolerated(0.44) probably_damaging(0.999) TCGA-3N-A9WD-06 X 107841936 107841936 G A COL4A5 Missense_Mutation p.G595E 0.38 unknown(0) TCGA-3N-A9WD-06 X 123539054 123539054 C T TENM1 Missense_Mutation p.G1740R 0.46 deleterious(0) possibly_damaging(0.49) TCGA-3N-A9WD-06 X 128902477 128902477 C T XPNPEP2 3'UTR 0.43 TCGA-3N-A9WD-06 X 129499457 129499457 C T SLC25A14 Intron 0.62 TCGA-3N-A9WD-06 X 135427359 135427359 G A GPR112 Missense_Mutation p.M498I 0.46 tolerated(0.16) benign(0.002) TCGA-3N-A9WD-06 X 135433609 135433609 C T GPR112 Missense_Mutation p.S2244F 0.59 deleterious(0) probably_damaging(0.998) TCGA-3N-A9WD-06 X 140993692 140993692 A C MAGEC1 Missense_Mutation p.S168R 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.451) TCGA-3N-A9WD-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.40 deleterious_low_confidence(0) benign(0.006) TCGA-3N-A9WD-06 X 148072778 148072778 G A AFF2 Silent p.L1284L 0.42 TCGA-3N-A9WD-06 X 148770517 148770517 C T MAGEA11 5'UTR 0.27 TCGA-3N-A9WD-06 X 148770518 148770518 C T MAGEA11 5'UTR 0.27 TCGA-3N-A9WD-06 X 151283891 151283891 G A RP11-1007I13.4 RNA 0.41 TCGA-3N-A9WD-06 X 151366229 151366229 G A GABRA3 Silent p.F269F 0.52 TCGA-3N-A9WD-06 X 152482219 152482219 G A MAGEA1 Silent p.F264F 0.42 TCGA-3N-A9WD-06 X 15657812 15657812 G A TMEM27 Missense_Mutation p.P129S 0.32 tolerated(0.48) benign(0.221) TCGA-3N-A9WD-06 X 16638434 16638434 G A CTPS2 Missense_Mutation p.P472L 0.30 tolerated(0.09) benign(0.028) TCGA-3N-A9WD-06 X 3228060 3228060 C T MXRA5 Silent p.V2728V 0.54 TCGA-3N-A9WD-06 X 34962224 34962224 G T FAM47B Nonsense_Mutation p.E426* 0.45 TCGA-3N-A9WD-06 X 37312690 37312690 C T PRRG1 Missense_Mutation p.S158F 0.51 tolerated(0.12) possibly_damaging(0.876) TCGA-3N-A9WD-06 X 48417338 48417338 G A TBC1D25 Missense_Mutation p.D148N 0.51 tolerated(0.09) possibly_damaging(0.746) TCGA-3N-A9WD-06 X 48542795 48542795 C T WAS Missense_Mutation p.R86C 0.23 deleterious(0) probably_damaging(0.999) TCGA-3N-A9WD-06 X 50121158 50121158 G A DGKK RNA 0.32 TCGA-3N-A9WD-06 X 50133349 50133349 C T DGKK RNA 0.42 TCGA-3N-A9WD-06 X 52825651 52825651 C T SPANXN5 Silent p.R32R 0.56 TCGA-3N-A9WD-06 X 54048761 54048761 T C PHF8 Missense_Mutation p.H111R 0.33 tolerated(0.42) benign(0.001) TCGA-3N-A9WD-06 X 66905896 66905896 G A AR Missense_Mutation p.D605N 0.42 deleterious(0) possibly_damaging(0.894) TCGA-3N-A9WD-06 X 67941931 67941931 G A STARD8 Silent p.R834R 0.53 TCGA-3N-A9WD-06 X 69283190 69283190 G A OTUD6A Silent p.V272V 0.64 TCGA-3N-A9WD-06 X 69478346 69478346 C T P2RY4 3'UTR 0.40 TCGA-3N-A9WD-06 X 69496576 69496576 G A ARR3 Missense_Mutation p.V155I 0.36 tolerated(1) benign(0.004) TCGA-3N-A9WD-06 X 70511697 70511697 C T NONO Missense_Mutation p.R75C 0.48 deleterious(0) possibly_damaging(0.873) TCGA-3N-A9WD-06 X 73066742 73066742 C T XIST RNA 0.50 TCGA-3N-A9WD-06 X 75004167 75004167 C T MAGEE2 Silent p.P240P 0.21 TCGA-3N-A9WD-06 X 76711989 76711989 C T FGF16 Silent p.S109S 0.44 TCGA-3N-A9WD-06 X 79932428 79932428 G C BRWD3 Missense_Mutation p.R1697G 0.48 tolerated_low_confidence(0.55) unknown(0) TCGA-3N-A9WD-06 X 84525733 84525733 G A ZNF711 Silent p.R395R 0.64 TCGA-3N-A9WD-06 X 84525734 84525734 G A ZNF711 Missense_Mutation p.G396R 0.64 deleterious(0.04) probably_damaging(0.994) TCGA-3N-A9WD-06 X 84561243 84561243 C T POF1B Missense_Mutation p.E421K 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-3N-A9WD-06 X 86868974 86868974 G A KLHL4 Missense_Mutation p.E173K 0.41 deleterious(0.04) possibly_damaging(0.492) TCGA-3N-A9WD-06 X 99945571 99945571 G A SYTL4 Nonsense_Mutation p.Q236* 0.47 TCGA-BF-A1PU-01 10 114186028 114186028 G A ACSL5 Missense_Mutation p.G640R 0.83 deleterious(0) probably_damaging(0.945) TCGA-BF-A1PU-01 10 125539769 125539769 G A CPXM2 Missense_Mutation p.P298S 0.70 deleterious(0.03) benign(0.23) TCGA-BF-A1PU-01 10 62029942 62029942 C T ANK3 Missense_Mutation p.E154K 0.79 probably_damaging(0.969) TCGA-BF-A1PU-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.74 TCGA-BF-A1PU-01 11 47317046 47317046 G T MADD Splice_Site p.X1173_splice 0.09 TCGA-BF-A1PU-01 11 48286113 48286113 C T OR4X1 Missense_Mutation p.A234V 0.41 deleterious(0.01) probably_damaging(0.979) TCGA-BF-A1PU-01 11 48286114 48286114 C A OR4X1 Silent p.A234A 0.41 TCGA-BF-A1PU-01 11 48346646 48346646 C T OR4C3 Missense_Mutation p.L52F 0.34 tolerated(0.09) benign(0.035) TCGA-BF-A1PU-01 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.36 TCGA-BF-A1PU-01 11 63586326 63586326 C T C11orf84 Silent p.V262V 0.32 TCGA-BF-A1PU-01 11 63586327 63586327 C T C11orf84 Nonsense_Mutation p.R263* 0.33 TCGA-BF-A1PU-01 12 10962063 10962063 G A TAS2R9 Silent p.S204S 0.55 TCGA-BF-A1PU-01 12 113612529 113612529 G A DDX54 Silent p.L328L 0.85 TCGA-BF-A1PU-01 12 125626733 125626733 C T AACS Silent p.T659T 0.61 TCGA-BF-A1PU-01 12 46233249 46233249 C T ARID2 Nonsense_Mutation p.Q490* 0.83 TCGA-BF-A1PU-01 12 48888647 48888647 G A C12orf54 Silent p.E103E 0.61 TCGA-BF-A1PU-01 12 49165490 49165490 T A ADCY6 Intron 0.20 TCGA-BF-A1PU-01 12 7640410 7640410 C T CD163 Missense_Mutation p.G565E 0.38 tolerated(0.09) benign(0.068) TCGA-BF-A1PU-01 13 113053480 113053480 C T SPACA7 Silent p.S114S 0.46 TCGA-BF-A1PU-01 13 31549009 31549009 C T TEX26 Missense_Mutation p.R279C 0.33 tolerated(0.09) benign(0.015) TCGA-BF-A1PU-01 13 47469888 47469888 G A HTR2A Nonsense_Mutation p.R52* 0.41 TCGA-BF-A1PU-01 14 20389211 20389211 G T OR4K5 Missense_Mutation p.W149L 0.45 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 14 22631522 22631522 C A TRAV29DV5 Missense_Mutation p.S38R 0.33 tolerated(0.19) benign(0.049) TCGA-BF-A1PU-01 15 29346627 29346627 G A APBA2 Silent p.Q180Q 0.40 TCGA-BF-A1PU-01 15 65917534 65917534 C T SLC24A1 Silent p.S372S 0.33 TCGA-BF-A1PU-01 16 20952783 20952783 G A DNAH3 Missense_Mutation p.P3865L 0.47 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PU-01 16 51170977 51170977 C T SALL1 3'UTR 0.38 TCGA-BF-A1PU-01 16 77401460 77401460 C T ADAMTS18 Missense_Mutation p.G219D 0.26 tolerated(0.62) benign(0.001) TCGA-BF-A1PU-01 17 14110342 14110342 C T COX10 Missense_Mutation p.P382S 0.51 tolerated(0.06) probably_damaging(0.985) TCGA-BF-A1PU-01 17 1657592 1657592 C T SERPINF2 Missense_Mutation p.P414S 0.44 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 17 36499248 36499248 G A GPR179 Missense_Mutation p.P142L 0.37 deleterious(0.01) benign(0.271) TCGA-BF-A1PU-01 17 40861891 40861891 G A EZH1 Missense_Mutation p.P489L 0.54 deleterious(0.01) benign(0.022) TCGA-BF-A1PU-01 17 48268796 48268796 C T COL1A1 Missense_Mutation p.G728E 0.42 probably_damaging(1) TCGA-BF-A1PU-01 17 48741454 48741454 G A ABCC3 Silent p.A440A 0.40 TCGA-BF-A1PU-01 17 59557471 59557471 C T TBX4 Missense_Mutation p.S271F 0.47 deleterious(0.01) probably_damaging(0.975) TCGA-BF-A1PU-01 17 73824968 73824968 C T UNC13D Silent p.E1017E 0.44 TCGA-BF-A1PU-01 17 7612773 7612773 G A EFNB3 Missense_Mutation p.G301E 0.49 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-BF-A1PU-01 18 3188758 3188758 G C MYOM1 Silent p.S253S 0.50 TCGA-BF-A1PU-01 18 33800069 33800069 A G MOCOS Missense_Mutation p.M617V 0.38 deleterious(0) possibly_damaging(0.62) TCGA-BF-A1PU-01 18 71749192 71749192 C T FBXO15 Nonsense_Mutation p.W411* 0.47 TCGA-BF-A1PU-01 19 17100547 17100547 C T CPAMD8 Missense_Mutation p.G481E 0.32 tolerated(0.07) probably_damaging(0.984) TCGA-BF-A1PU-01 19 2226433 2226433 G A DOT1L Missense_Mutation p.G1305R 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-A1PU-01 19 42222066 42222066 C T CEACAM5 Silent p.T419T 0.35 TCGA-BF-A1PU-01 19 46733596 46733596 G A IGFL1 Missense_Mutation p.D49N 0.47 tolerated(0.74) benign(0.037) TCGA-BF-A1PU-01 1 152277111 152277111 C T FLG Silent p.Q3417Q 0.41 TCGA-BF-A1PU-01 1 152283563 152283563 C T FLG Missense_Mutation p.G1267R 0.44 probably_damaging(0.988) TCGA-BF-A1PU-01 1 152944374 152944374 C T SPRR4 Missense_Mutation p.S3F 0.49 deleterious_low_confidence(0) unknown(0) TCGA-BF-A1PU-01 1 156849015 156849015 C T NTRK1 Missense_Mutation p.A636V 0.38 deleterious(0) possibly_damaging(0.556) TCGA-BF-A1PU-01 1 18149591 18149591 C T ACTL8 Missense_Mutation p.P30S 0.78 deleterious(0.01) probably_damaging(0.989) TCGA-BF-A1PU-01 1 228486167 228486167 G A OBSCN Missense_Mutation p.R4320Q 0.35 benign(0.086) TCGA-BF-A1PU-01 1 35656521 35656521 G A SFPQ Missense_Mutation p.R365C 0.68 deleterious(0.01) benign(0.124) TCGA-BF-A1PU-01 1 40431577 40431577 G A MFSD2A Missense_Mutation p.G215E 0.70 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 20 23669384 23669384 C T CST4 Missense_Mutation p.E75K 0.28 tolerated(1) benign(0.005) TCGA-BF-A1PU-01 2 111399740 111399740 C A BUB1 Nonsense_Mutation p.G807* 0.08 TCGA-BF-A1PU-01 2 113818515 113818515 G T IL36RN Splice_Site p.X39_splice 0.28 TCGA-BF-A1PU-01 2 119750795 119750795 G A MARCO Missense_Mutation p.E450K 0.32 deleterious(0.03) unknown(0) TCGA-BF-A1PU-01 2 1241704 1241704 G A SNTG2 Missense_Mutation p.G255E 0.91 deleterious(0) possibly_damaging(0.844) TCGA-BF-A1PU-01 2 131520378 131520378 G A AMER3 Missense_Mutation p.D245N 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-BF-A1PU-01 2 132240164 132240164 G A TUBA3D Missense_Mutation p.G366R 0.35 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BF-A1PU-01 2 150071082 150071082 G A LYPD6B Missense_Mutation p.G161E 0.46 probably_damaging(1) TCGA-BF-A1PU-01 2 179435636 179435636 G A TTN Missense_Mutation p.H25075Y 0.41 TCGA-BF-A1PU-01 2 27351972 27351972 C T ABHD1 Silent p.N145N 0.81 TCGA-BF-A1PU-01 2 31588332 31588332 G A XDH Silent p.A845A 0.82 TCGA-BF-A1PU-01 2 46206112 46206112 C T PRKCE Intron 0.72 TCGA-BF-A1PU-01 2 60688288 60688288 C T BCL11A Missense_Mutation p.E587K 0.77 tolerated(0.1) benign(0.247) TCGA-BF-A1PU-01 3 10417305 10417305 C T ATP2B2 Missense_Mutation p.V409M 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1PU-01 3 10970933 10970933 C T SLC6A11 Missense_Mutation p.P427S 0.41 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 3 121414883 121414883 G A GOLGB1 Missense_Mutation p.S1496F 0.40 probably_damaging(1) TCGA-BF-A1PU-01 3 12558112 12558112 C T TSEN2 Silent p.A304A 0.35 TCGA-BF-A1PU-01 3 3144437 3144437 C T IL5RA Nonsense_Mutation p.W50* 0.30 TCGA-BF-A1PU-01 3 38417659 38417659 C T XYLB Silent p.S352S 0.37 TCGA-BF-A1PU-01 3 38417660 38417660 C T XYLB Missense_Mutation p.R353C 0.38 tolerated(0.16) benign(0.003) TCGA-BF-A1PU-01 3 38639416 38639416 C T SCN5A Missense_Mutation p.R689H 0.47 tolerated(0.18) benign(0.001) TCGA-BF-A1PU-01 3 50131285 50131285 C T RBM5 Missense_Mutation p.P106S 0.41 tolerated(0.17) probably_damaging(0.995) TCGA-BF-A1PU-01 3 53260800 53260800 G A TKT Silent p.I564I 0.47 TCGA-BF-A1PU-01 3 64619553 64619553 G T ADAMTS9 Missense_Mutation p.P620Q 0.39 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 5 140573706 140573706 C T PCDHB10 Silent p.F527F 0.30 TCGA-BF-A1PU-01 5 141515366 141515366 C T NDFIP1 Silent p.F118F 0.40 TCGA-BF-A1PU-01 5 168199840 168199840 G A SLIT3 Nonsense_Mutation p.R469* 0.51 TCGA-BF-A1PU-01 5 35035412 35035412 A G AGXT2 Silent p.L166L 0.38 TCGA-BF-A1PU-01 5 63256815 63256815 T A HTR1A Silent p.A244A 0.38 TCGA-BF-A1PU-01 5 64766968 64766968 C T ADAMTS6 Silent p.E33E 0.50 TCGA-BF-A1PU-01 5 82817330 82817330 G A VCAN Missense_Mutation p.D1069N 0.48 tolerated(0.06) benign(0.023) TCGA-BF-A1PU-01 6 125397968 125397968 C T RNF217 Missense_Mutation p.P191S 0.40 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PU-01 6 130460844 130460844 C T L3MBTL3 Silent p.F763F 0.41 TCGA-BF-A1PU-01 6 24578408 24578408 C T KIAA0319 Missense_Mutation p.E479K 0.39 tolerated(0.06) probably_damaging(0.952) TCGA-BF-A1PU-01 6 43227378 43227378 G A TTBK1 Missense_Mutation p.R453K 0.42 possibly_damaging(0.897) TCGA-BF-A1PU-01 7 102614084 102614084 G A FBXL13 Intron 0.83 TCGA-BF-A1PU-01 7 135303182 135303182 A G NUP205 Missense_Mutation p.Y1265C 0.81 tolerated(0.13) possibly_damaging(0.886) TCGA-BF-A1PU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.94 deleterious(0) probably_damaging(0.967) TCGA-BF-A1PU-01 7 142139755 142139755 G A TRBV7-6 Silent p.L6L 0.84 TCGA-BF-A1PU-01 7 142562309 142562309 G T EPHB6 Missense_Mutation p.G251W 0.34 deleterious(0) probably_damaging(0.98) TCGA-BF-A1PU-01 7 143140796 143140796 C A TAS2R60 Missense_Mutation p.P84Q 0.46 tolerated(0.33) probably_damaging(1) TCGA-BF-A1PU-01 7 150069096 150069096 C T REPIN1 Missense_Mutation p.R313C 0.08 deleterious(0) probably_damaging(0.982) TCGA-BF-A1PU-01 7 82584475 82584475 G A PCLO Missense_Mutation p.P1932S 0.47 unknown(0) TCGA-BF-A1PU-01 7 87179329 87179329 C T ABCB1 Silent p.R464R 0.39 TCGA-BF-A1PU-01 8 110413798 110413798 C T PKHD1L1 Missense_Mutation p.H452Y 0.44 tolerated(1) benign(0.006) TCGA-BF-A1PU-01 8 123965169 123965169 C T ZHX2 Silent p.I473I 0.43 TCGA-BF-A1PU-01 8 139697492 139697492 C T COL22A1 Missense_Mutation p.G976R 0.14 unknown(0) TCGA-BF-A1PU-01 8 22884663 22884663 C T TNFRSF10B Missense_Mutation p.E307K 0.38 deleterious(0) possibly_damaging(0.889) TCGA-BF-A1PU-01 8 88885348 88885348 G A DCAF4L2 Silent p.F284F 0.49 TCGA-BF-A1PU-01 9 135698650 135698650 C T AK8 Silent p.V277V 0.40 TCGA-BF-A1PU-01 9 140870378 140870378 C T CACNA1B Silent p.F521F 0.34 TCGA-BF-A1PU-01 9 17457667 17457667 C A CNTLN Nonsense_Mutation p.S1087* 0.10 TCGA-BF-A1PU-01 X 123587303 123587303 C T TENM1 Missense_Mutation p.D1330N 0.32 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 X 153040478 153040478 G A PLXNB3 Missense_Mutation p.E1382K 0.48 tolerated(0.14) possibly_damaging(0.631) TCGA-BF-A1PU-01 X 18660162 18660162 G A RS1 Missense_Mutation p.R213W 0.39 deleterious(0) probably_damaging(1) TCGA-BF-A1PU-01 X 52825355 52825355 T C SPANXN5 3'UTR 0.34 TCGA-BF-A1PU-01 X 54263821 54263821 G A WNK3 Missense_Mutation p.S1393L 0.36 tolerated(0.37) benign(0.003) TCGA-BF-A1PU-01 X 70356342 70356342 C A MED12 Missense_Mutation p.P1746Q 0.57 benign(0.037) TCGA-BF-A1PU-01 X 70823635 70823635 G A ACRC Missense_Mutation p.D170N 0.40 unknown(0) TCGA-BF-A1PU-01 X 79978275 79978275 C T BRWD3 Silent p.Q554Q 0.46 TCGA-BF-A1PV-01 10 101165984 101165984 G A GOT1 Silent p.S149S 0.48 TCGA-BF-A1PV-01 10 103912053 103912053 C T NOLC1 5'UTR 0.46 TCGA-BF-A1PV-01 10 115412762 115412762 C T NRAP Missense_Mutation p.G168R 0.40 tolerated(0.33) probably_damaging(1) TCGA-BF-A1PV-01 10 124043430 124043430 G A BTBD16 Missense_Mutation p.G78R 0.24 tolerated(0.6) benign(0.021) TCGA-BF-A1PV-01 10 124596504 124596504 G A CUZD1 Silent p.T220T 0.46 TCGA-BF-A1PV-01 10 21097441 21097441 C T NEBL Missense_Mutation p.G920E 0.44 tolerated(0.06) benign(0.007) TCGA-BF-A1PV-01 10 46999963 46999963 T G GPRIN2 Missense_Mutation p.H361Q 0.19 deleterious(0.02) possibly_damaging(0.591) TCGA-BF-A1PV-01 10 46999964 46999964 G T GPRIN2 Missense_Mutation p.V362L 0.18 tolerated(0.14) benign(0.002) TCGA-BF-A1PV-01 10 47087692 47087692 C T NPY4R Silent p.I303I 0.18 TCGA-BF-A1PV-01 10 63170314 63170314 C T TMEM26 Silent p.A291A 0.58 TCGA-BF-A1PV-01 10 63700073 63700073 G A ARID5B Silent p.R136R 0.47 TCGA-BF-A1PV-01 10 69882042 69882042 G A MYPN Missense_Mutation p.G283R 0.45 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 10 74692285 74692285 C T OIT3 3'UTR 0.58 TCGA-BF-A1PV-01 10 75258464 75258464 C T USP54 Missense_Mutation p.G1660R 0.36 tolerated_low_confidence(0.37) benign(0.008) TCGA-BF-A1PV-01 10 75258465 75258465 C T USP54 Silent p.E1659E 0.35 TCGA-BF-A1PV-01 10 79569428 79569428 G A DLG5 Silent p.S1508S 0.33 TCGA-BF-A1PV-01 10 87484330 87484330 T C GRID1 Missense_Mutation p.K546R 0.57 tolerated(1) benign(0.003) TCGA-BF-A1PV-01 11 102056830 102056830 C T YAP1 Missense_Mutation p.S257F 0.61 deleterious(0) probably_damaging(0.985) TCGA-BF-A1PV-01 11 113286265 113286265 G A DRD2 Missense_Mutation p.P201S 0.52 deleterious(0.01) probably_damaging(0.978) TCGA-BF-A1PV-01 11 116703740 116703740 C T APOC3 3'UTR 0.47 TCGA-BF-A1PV-01 11 118239494 118239494 G A UBE4A Silent p.R90R 0.33 TCGA-BF-A1PV-01 11 128781885 128781885 C T KCNJ5 Silent p.I239I 0.41 TCGA-BF-A1PV-01 11 128781893 128781893 G A KCNJ5 Missense_Mutation p.R242Q 0.38 tolerated(0.05) benign(0.013) TCGA-BF-A1PV-01 11 16816459 16816459 G A PLEKHA7 Missense_Mutation p.P839L 0.51 deleterious(0.05) benign(0.334) TCGA-BF-A1PV-01 11 1718677 1718677 G A KRTAP5-6 Missense_Mutation p.G68R 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-BF-A1PV-01 11 18610251 18610251 C T UEVLD 5'Flank 0.37 TCGA-BF-A1PV-01 11 20530003 20530003 G A PRMT3 3'UTR 0.38 TCGA-BF-A1PV-01 11 3832517 3832517 C T PGAP2 Missense_Mutation p.R10W 0.52 deleterious(0) possibly_damaging(0.881) TCGA-BF-A1PV-01 11 44072947 44072947 C T ACCSL Missense_Mutation p.P233L 0.33 tolerated(0.08) possibly_damaging(0.465) TCGA-BF-A1PV-01 11 45671313 45671313 G A CHST1 Silent p.I387I 0.43 TCGA-BF-A1PV-01 11 4567217 4567217 G A OR52M1 Missense_Mutation p.R266Q 0.36 deleterious(0.01) benign(0.127) TCGA-BF-A1PV-01 11 4626776 4626776 G A TRIM68 5'UTR 0.39 TCGA-BF-A1PV-01 11 56237408 56237408 C T OR5M3 Missense_Mutation p.G189E 0.26 deleterious(0.01) benign(0.081) TCGA-BF-A1PV-01 11 57982301 57982301 G A OR1S1 Missense_Mutation p.G29R 0.32 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PV-01 11 62301548 62301548 T C AHNAK Splice_Site p.X115_splice 0.64 TCGA-BF-A1PV-01 11 63283841 63283841 C T LGALS12 Silent p.V330V 0.50 TCGA-BF-A1PV-01 11 64503020 64503020 C T RASGRP2 Missense_Mutation p.M430I 0.40 deleterious(0) possibly_damaging(0.824) TCGA-BF-A1PV-01 11 67166506 67166506 C T PPP1CA Missense_Mutation p.E229K 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.615) TCGA-BF-A1PV-01 11 72145675 72145675 G A CLPB 5'UTR 0.43 TCGA-BF-A1PV-01 11 7334957 7334957 C T SYT9 Missense_Mutation p.H277Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PV-01 11 75852265 75852265 C A UVRAG Silent p.I636I 0.10 TCGA-BF-A1PV-01 11 7984773 7984773 G A NLRP10 Silent p.L90L 0.37 TCGA-BF-A1PV-01 12 104063322 104063322 C T STAB2 Missense_Mutation p.P726S 0.43 deleterious(0.03) possibly_damaging(0.884) TCGA-BF-A1PV-01 12 105198795 105198795 T A SLC41A2 3'UTR 0.27 TCGA-BF-A1PV-01 12 108011078 108011078 G A BTBD11 Missense_Mutation p.G699E 0.39 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PV-01 12 108102893 108102893 G A PWP1 Missense_Mutation p.D392N 0.46 tolerated(0.45) benign(0.002) TCGA-BF-A1PV-01 12 11546911 11546911 C T PRB2 Missense_Mutation p.G34E 0.41 deleterious_low_confidence(0.02) unknown(0) TCGA-BF-A1PV-01 12 121469308 121469308 G A OASL Silent p.F198F 0.43 TCGA-BF-A1PV-01 12 121471375 121471375 C T OASL Missense_Mutation p.E124K 0.44 tolerated(0.87) benign(0.004) TCGA-BF-A1PV-01 12 20890120 20890120 G A SLCO1C1 Missense_Mutation p.E488K 0.35 deleterious(0) possibly_damaging(0.665) TCGA-BF-A1PV-01 12 21196326 21196326 C T SLCO1B7 Silent p.F215F 0.33 TCGA-BF-A1PV-01 12 21991094 21991094 C T ABCC9 Missense_Mutation p.E1162K 0.49 deleterious(0.05) benign(0.097) TCGA-BF-A1PV-01 12 247568 247568 C T IQSEC3 Silent p.L347L 0.57 TCGA-BF-A1PV-01 12 4853747 4853747 G A GALNT8 Silent p.L247L 0.35 TCGA-BF-A1PV-01 12 4919931 4919931 G A KCNA6 Missense_Mutation p.E242K 0.40 tolerated(0.87) benign(0.005) TCGA-BF-A1PV-01 12 5154998 5154998 C T KCNA5 Missense_Mutation p.S562F 0.37 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PV-01 12 51675263 51675263 G A BIN2 3'UTR 0.37 TCGA-BF-A1PV-01 12 52818522 52818522 G A KRT75 Missense_Mutation p.L479F 0.55 tolerated(0.26) benign(0.012) TCGA-BF-A1PV-01 12 56625174 56625174 A C SLC39A5 Missense_Mutation p.Y39S 0.43 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PV-01 12 79837936 79837936 C T SYT1 Missense_Mutation p.P338S 0.43 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 12 85450857 85450857 G A LRRIQ1 Silent p.K762K 0.48 TCGA-BF-A1PV-01 12 88379815 88379815 C T C12orf50 Missense_Mutation p.R313K 0.46 deleterious(0.01) benign(0.02) TCGA-BF-A1PV-01 12 9346693 9346693 C T PZP Missense_Mutation p.V412I 0.30 tolerated(0.24) benign(0.004) TCGA-BF-A1PV-01 13 103698526 103698526 G A SLC10A2 Missense_Mutation p.S335L 0.46 tolerated(0.08) benign(0.001) TCGA-BF-A1PV-01 13 111156271 111156271 C T COL4A2 Missense_Mutation p.P1406S 0.44 possibly_damaging(0.876) TCGA-BF-A1PV-01 13 32914692 32914692 C T BRCA2 Missense_Mutation p.S2067F 0.35 tolerated(0.06) possibly_damaging(0.745) TCGA-BF-A1PV-01 13 36229125 36229125 C T NBEA Silent p.F2702F 0.50 TCGA-BF-A1PV-01 13 50140769 50140769 G A RCBTB1 Missense_Mutation p.L88F 0.37 deleterious(0.01) possibly_damaging(0.753) TCGA-BF-A1PV-01 13 84454314 84454314 G A SLITRK1 Silent p.F443F 0.45 TCGA-BF-A1PV-01 14 103432657 103432657 C G CDC42BPB Missense_Mutation p.E847Q 0.42 deleterious(0) probably_damaging(0.966) TCGA-BF-A1PV-01 14 106926361 106926361 C T IGHV3-43 Missense_Mutation p.G61R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-BF-A1PV-01 14 107095208 107095208 G A IGHV4-61 Missense_Mutation p.S91L 0.27 deleterious(0.01) benign(0.062) TCGA-BF-A1PV-01 14 20666514 20666514 G A OR11G2 Silent p.K340K 0.43 TCGA-BF-A1PV-01 14 21820751 21820751 G A SUPT16H 3'UTR 0.43 TCGA-BF-A1PV-01 14 22573656 22573656 C T TRAV24 Missense_Mutation p.L13F 0.48 tolerated(0.11) benign(0.411) TCGA-BF-A1PV-01 14 24534842 24534842 G A LRRC16B Silent p.G1136G 0.39 TCGA-BF-A1PV-01 14 32902941 32902941 C T AKAP6 Missense_Mutation p.S81L 0.35 deleterious(0) probably_damaging(0.994) TCGA-BF-A1PV-01 14 51196294 51196294 G A NIN Nonsense_Mutation p.Q2009* 0.36 TCGA-BF-A1PV-01 14 60712730 60712730 G A PPM1A Missense_Mutation p.M55I 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-BF-A1PV-01 14 70714022 70714022 G A ADAM21P1 RNA 0.38 TCGA-BF-A1PV-01 14 70924572 70924572 C T ADAM21 Missense_Mutation p.P119L 0.11 tolerated(0.1) benign(0.327) TCGA-BF-A1PV-01 14 74428237 74428237 C G ENTPD5 3'Flank 0.29 TCGA-BF-A1PV-01 14 88454820 88454820 C A GALC Missense_Mutation p.Q81H 0.40 deleterious(0.03) possibly_damaging(0.632) TCGA-BF-A1PV-01 14 94756511 94756511 G A SERPINA10 Silent p.L140L 0.38 TCGA-BF-A1PV-01 14 94909486 94909486 G A SERPINA11 Missense_Mutation p.L332F 0.53 tolerated(0.14) benign(0.105) TCGA-BF-A1PV-01 15 20496610 20496610 G A CHEK2P2 RNA 0.10 TCGA-BF-A1PV-01 15 42651924 42651924 C T CAPN3 5'UTR 0.19 TCGA-BF-A1PV-01 15 50534909 50534909 C T HDC Missense_Mutation p.G513R 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.594) TCGA-BF-A1PV-01 15 59910454 59910454 G A GCNT3 Missense_Mutation p.R6K 0.43 tolerated_low_confidence(1) benign(0.001) TCGA-BF-A1PV-01 15 74486141 74486141 C T STRA6 Silent p.K279K 0.52 TCGA-BF-A1PV-01 15 75047399 75047399 C T CYP1A2 Silent p.V507V 0.46 TCGA-BF-A1PV-01 15 86265545 86265545 G A AKAP13 Missense_Mutation p.V2159I 0.40 deleterious(0) probably_damaging(0.986) TCGA-BF-A1PV-01 16 16295996 16295996 G A ABCC6 Silent p.A346A 0.67 TCGA-BF-A1PV-01 16 18532111 18532111 G A NOMO2 Missense_Mutation p.S750L 0.20 tolerated(0.73) benign(0) TCGA-BF-A1PV-01 16 19481053 19481053 G A TMC5 Missense_Mutation p.G563E 0.43 tolerated(1) benign(0.03) TCGA-BF-A1PV-01 16 20430564 20430564 C T ACSM5 Missense_Mutation p.P144S 0.33 deleterious(0.01) probably_damaging(0.925) TCGA-BF-A1PV-01 16 29675424 29675424 A G SPN Silent p.L125L 0.49 TCGA-BF-A1PV-01 16 2983757 2983757 C T FLYWCH1 Silent p.F429F 0.43 TCGA-BF-A1PV-01 16 31382410 31382410 C T ITGAX Silent p.I572I 0.40 TCGA-BF-A1PV-01 16 314898 314898 C T ITFG3 Silent p.I512I 0.50 TCGA-BF-A1PV-01 16 48231955 48231955 C T ABCC11 Silent p.K747K 0.36 TCGA-BF-A1PV-01 16 48261785 48261785 C T ABCC11 Silent p.R109R 0.33 TCGA-BF-A1PV-01 16 56977182 56977182 C T HERPUD1 Missense_Mutation p.P386S 0.34 deleterious(0) probably_damaging(0.994) TCGA-BF-A1PV-01 16 57116378 57116378 C T NLRC5 Nonsense_Mutation p.Q1847* 0.27 TCGA-BF-A1PV-01 16 69988295 69988295 C T CLEC18A Missense_Mutation p.P92L 0.12 tolerated(0.3) benign(0.005) TCGA-BF-A1PV-01 16 70926411 70926411 C T HYDIN Silent p.G3090G 0.38 TCGA-BF-A1PV-01 16 70926412 70926412 C T HYDIN Missense_Mutation p.G3090E 0.36 probably_damaging(0.988) TCGA-BF-A1PV-01 16 81969973 81969973 C T PLCG2 Silent p.F1014F 0.35 TCGA-BF-A1PV-01 16 89703657 89703657 G A DPEP1 Missense_Mutation p.A213T 0.53 deleterious(0.01) possibly_damaging(0.818) TCGA-BF-A1PV-01 17 18392260 18392260 C T LGALS9C Silent p.P150P 0.22 TCGA-BF-A1PV-01 17 18923800 18923800 C T SLC5A10 3'UTR 0.40 TCGA-BF-A1PV-01 17 26861437 26861437 C T FOXN1 Missense_Mutation p.S339F 0.45 deleterious(0) probably_damaging(0.993) TCGA-BF-A1PV-01 17 29533315 29533315 C T NF1 Nonsense_Mutation p.R440* 0.91 TCGA-BF-A1PV-01 17 33353573 33353573 G A RAD51L3-RFFL Intron 0.95 TCGA-BF-A1PV-01 17 42225491 42225491 C T C17orf53 Missense_Mutation p.S107F 0.93 deleterious(0.03) possibly_damaging(0.539) TCGA-BF-A1PV-01 17 4461605 4461605 C T GGT6 Missense_Mutation p.S396N 0.39 tolerated(0.1) benign(0.271) TCGA-BF-A1PV-01 17 61560861 61560861 G A ACE Missense_Mutation p.E510K 0.88 deleterious(0) probably_damaging(0.941) TCGA-BF-A1PV-01 17 73751232 73751232 C T ITGB4 Intron 0.29 TCGA-BF-A1PV-01 17 7557429 7557429 G A ATP1B2 Missense_Mutation p.E136K 0.38 tolerated(0.69) benign(0.047) TCGA-BF-A1PV-01 17 76968665 76968665 G A LGALS3BP Missense_Mutation p.L251F 0.88 deleterious(0) probably_damaging(0.952) TCGA-BF-A1PV-01 17 76968666 76968666 G A LGALS3BP Silent p.L250L 0.85 TCGA-BF-A1PV-01 17 7722568 7722568 C T DNAH2 Silent p.F3619F 0.41 TCGA-BF-A1PV-01 18 14542973 14542973 C T POTEC Missense_Mutation p.R58K 0.12 deleterious_low_confidence(0) benign(0.067) TCGA-BF-A1PV-01 18 19209101 19209101 G A SNRPD1 3'UTR 0.31 TCGA-BF-A1PV-01 18 19997134 19997134 C T CTAGE1 Missense_Mutation p.R214K 0.59 tolerated(1) benign(0.002) TCGA-BF-A1PV-01 18 23619270 23619270 T C SS18 Missense_Mutation p.Y253C 0.11 deleterious(0) possibly_damaging(0.79) TCGA-BF-A1PV-01 18 32345942 32345942 C T DTNA Missense_Mutation p.R29C 0.45 tolerated(0.13) benign(0.005) TCGA-BF-A1PV-01 18 34853081 34853081 C T CELF4 Missense_Mutation p.G283S 0.63 tolerated(0.61) probably_damaging(0.999) TCGA-BF-A1PV-01 18 42618621 42618621 G A SETBP1 Splice_Site p.X1391_splice 0.42 TCGA-BF-A1PV-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.25 TCGA-BF-A1PV-01 18 61562584 61562584 C T SERPINB2 Silent p.I85I 0.67 TCGA-BF-A1PV-01 18 8784733 8784733 C T SOGA2 Silent p.S541S 0.65 TCGA-BF-A1PV-01 19 13427954 13427954 G A CACNA1A Silent p.N509N 0.38 TCGA-BF-A1PV-01 19 18327582 18327582 C T PDE4C Missense_Mutation p.R485Q 0.54 deleterious(0) possibly_damaging(0.77) TCGA-BF-A1PV-01 19 18376574 18376574 G A KIAA1683 Silent p.V592V 0.48 TCGA-BF-A1PV-01 19 39071102 39071102 G A RYR1 Silent p.E4868E 0.43 TCGA-BF-A1PV-01 19 41071430 41071430 G A SPTBN4 Missense_Mutation p.R2006Q 0.30 tolerated(0.16) benign(0.207) TCGA-BF-A1PV-01 19 41071462 41071462 G A SPTBN4 Missense_Mutation p.D2017N 0.29 tolerated(0.2) benign(0.004) TCGA-BF-A1PV-01 19 41512832 41512832 C T CYP2B6 Silent p.F169F 0.54 TCGA-BF-A1PV-01 19 43414971 43414971 T C PSG6 Missense_Mutation p.N156S 0.44 tolerated(0.14) benign(0.093) TCGA-BF-A1PV-01 19 44047542 44047542 C T XRCC1 3'UTR 0.49 TCGA-BF-A1PV-01 19 45024764 45024764 G A CEACAM20 RNA 0.40 TCGA-BF-A1PV-01 19 48339556 48339556 G A CRX Missense_Mutation p.E53K 0.39 deleterious(0.03) possibly_damaging(0.657) TCGA-BF-A1PV-01 19 49340728 49340728 G A PLEKHA4 Missense_Mutation p.P720S 0.38 tolerated_low_confidence(0.27) benign(0.014) TCGA-BF-A1PV-01 19 50166467 50166467 C T IRF3 Missense_Mutation p.G129E 0.44 tolerated(1) benign(0.206) TCGA-BF-A1PV-01 19 53911308 53911308 C T ZNF765 Missense_Mutation p.S167F 0.56 deleterious(0.03) probably_damaging(0.916) TCGA-BF-A1PV-01 19 5455739 5455739 C T ZNRF4 Silent p.A79A 0.45 TCGA-BF-A1PV-01 19 55087289 55087289 G A LILRA2 Missense_Mutation p.R323K 0.25 tolerated(0.35) benign(0.217) TCGA-BF-A1PV-01 19 9047571 9047571 G A MUC16 Missense_Mutation p.P11354S 0.49 benign(0) TCGA-BF-A1PV-01 19 9075901 9075901 T C MUC16 Missense_Mutation p.T3849A 0.30 unknown(0) TCGA-BF-A1PV-01 1 103381207 103381207 G A COL11A1 Missense_Mutation p.P1266S 0.50 unknown(0) TCGA-BF-A1PV-01 1 103428225 103428225 C T COL11A1 Missense_Mutation p.G1003E 0.47 unknown(0) TCGA-BF-A1PV-01 1 109897060 109897060 G A SORT1 Missense_Mutation p.P213S 0.42 deleterious(0.01) benign(0.183) TCGA-BF-A1PV-01 1 112318829 112318829 G A KCND3 Missense_Mutation p.A613V 0.58 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-BF-A1PV-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.44 deleterious(0) benign(0.109) TCGA-BF-A1PV-01 1 12779546 12779546 C T AADACL3 Missense_Mutation p.P23S 0.39 tolerated(0.66) possibly_damaging(0.772) TCGA-BF-A1PV-01 1 12919002 12919002 G A PRAMEF2 Silent p.R46R 0.28 TCGA-BF-A1PV-01 1 145281564 145281564 C T NOTCH2NL Missense_Mutation p.S165F 0.09 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PV-01 1 152188374 152188374 C T HRNR Missense_Mutation p.E1911K 0.05 unknown(0) TCGA-BF-A1PV-01 1 153390687 153390687 C T S100A7A Silent p.F43F 0.36 TCGA-BF-A1PV-01 1 158606485 158606485 C T SPTA1 Silent p.L1752L 0.34 TCGA-BF-A1PV-01 1 158656289 158656289 C T SPTA1 Missense_Mutation p.E7K 0.56 deleterious_low_confidence(0.02) benign(0.13) TCGA-BF-A1PV-01 1 158656312 158656312 C T SPTA1 5'UTR 0.50 TCGA-BF-A1PV-01 1 158736021 158736021 C T OR6N1 Missense_Mutation p.G151E 0.55 tolerated(0.07) possibly_damaging(0.456) TCGA-BF-A1PV-01 1 161199554 161199554 C T NR1I3 3'UTR 0.46 TCGA-BF-A1PV-01 1 162367042 162367042 C T SH2D1B 3'UTR 0.25 TCGA-BF-A1PV-01 1 171227356 171227356 A C FMO1 Missense_Mutation p.T44P 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-BF-A1PV-01 1 17706448 17706448 G A PADI6 RNA 0.37 TCGA-BF-A1PV-01 1 177226513 177226513 C T BRINP2 Missense_Mutation p.A221V 0.19 deleterious(0.01) benign(0.368) TCGA-BF-A1PV-01 1 180034295 180034295 C T CEP350 Missense_Mutation p.P1819S 0.46 possibly_damaging(0.902) TCGA-BF-A1PV-01 1 180034296 180034296 C T CEP350 Missense_Mutation p.P1819L 0.40 possibly_damaging(0.902) TCGA-BF-A1PV-01 1 184663419 184663419 G A EDEM3 Silent p.S859S 0.67 TCGA-BF-A1PV-01 1 200819197 200819197 C T CAMSAP2 Silent p.P1100P 0.38 TCGA-BF-A1PV-01 1 203149625 203149625 C T CHI3L1 Silent p.K289K 0.38 TCGA-BF-A1PV-01 1 204588452 204588452 C T LRRN2 Missense_Mutation p.M223I 0.40 tolerated(0.19) probably_damaging(0.998) TCGA-BF-A1PV-01 1 20517992 20517992 G A UBXN10 3'UTR 0.47 TCGA-BF-A1PV-01 1 209946292 209946292 G A TRAF3IP3 Splice_Site p.X235_splice 0.60 TCGA-BF-A1PV-01 1 215813981 215813981 C T USH2A Missense_Mutation p.E4963K 0.57 possibly_damaging(0.829) TCGA-BF-A1PV-01 1 23208919 23208919 C T EPHB2 Silent p.S457S 0.35 TCGA-BF-A1PV-01 1 232650533 232650533 C T SIPA1L2 Missense_Mutation p.G185R 0.39 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PV-01 1 23645128 23645128 G A HNRNPR Missense_Mutation p.R292W 0.34 deleterious(0.03) benign(0.273) TCGA-BF-A1PV-01 1 24125086 24125086 G T GALE Intron 0.14 TCGA-BF-A1PV-01 1 247599429 247599429 C T NLRP3 Silent p.L886L 0.50 TCGA-BF-A1PV-01 1 247902629 247902629 A G OR14K1 Missense_Mutation p.N238S 0.50 deleterious(0) benign(0.106) TCGA-BF-A1PV-01 1 248637593 248637593 G A OR2T3 Missense_Mutation p.M314I 0.25 tolerated(0.47) benign(0.003) TCGA-BF-A1PV-01 1 26301060 26301060 G A PAFAH2 Silent p.I280I 0.36 TCGA-BF-A1PV-01 1 32653642 32653642 G A TXLNA Missense_Mutation p.G229S 0.38 tolerated(1) benign(0.002) TCGA-BF-A1PV-01 1 34011788 34011788 C T CSMD2 Silent p.G2839G 0.36 TCGA-BF-A1PV-01 1 57192203 57192203 T G C1orf168 Missense_Mutation p.K616T 0.36 deleterious(0.02) possibly_damaging(0.904) TCGA-BF-A1PV-01 1 60366767 60366767 C T CYP2J2 Missense_Mutation p.M400I 0.32 tolerated(0.46) benign(0.004) TCGA-BF-A1PV-01 1 62672587 62672587 C T L1TD1 Missense_Mutation p.S96F 0.42 tolerated(0.09) unknown(0) TCGA-BF-A1PV-01 1 70715641 70715641 A G SRSF11 Silent p.R343R 0.12 TCGA-BF-A1PV-01 20 42213755 42213755 G A SGK2 3'UTR 0.59 TCGA-BF-A1PV-01 20 43752754 43752754 C T WFDC12 Missense_Mutation p.E78K 0.30 tolerated(0.72) benign(0.008) TCGA-BF-A1PV-01 20 48524859 48524859 G A SPATA2 Missense_Mutation p.P57S 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BF-A1PV-01 20 5528222 5528222 G A GPCPD1 3'UTR 0.43 TCGA-BF-A1PV-01 20 62162165 62162165 C T PTK6 Silent p.R316R 0.64 TCGA-BF-A1PV-01 20 62737760 62737760 C T NPBWR2 Missense_Mutation p.R142Q 0.35 deleterious(0) possibly_damaging(0.819) TCGA-BF-A1PV-01 20 77012 77012 C T DEFB125 Missense_Mutation p.S142F 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-BF-A1PV-01 21 34018757 34018757 G A SYNJ1 Missense_Mutation p.P1104S 0.42 deleterious(0.03) probably_damaging(0.98) TCGA-BF-A1PV-01 21 45712900 45712900 G A AIRE Missense_Mutation p.G374R 0.44 tolerated(0.12) possibly_damaging(0.729) TCGA-BF-A1PV-01 21 46058017 46058017 C T KRTAP10-10 Missense_Mutation p.S228F 0.46 deleterious(0) probably_damaging(0.973) TCGA-BF-A1PV-01 21 46951827 46951827 G A SLC19A1 Missense_Mutation p.S142F 0.33 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PV-01 22 21346528 21346528 G A LZTR1 Missense_Mutation p.R340Q 0.46 tolerated(0.23) benign(0) TCGA-BF-A1PV-01 22 22020299 22020299 G A PPIL2 5'UTR 0.62 TCGA-BF-A1PV-01 22 25158342 25158342 G A PIWIL3 Intron 0.48 TCGA-BF-A1PV-01 22 29835113 29835113 G A RFPL1 Silent p.K111K 0.36 TCGA-BF-A1PV-01 22 32853355 32853355 G A BPIFC Missense_Mutation p.P7S 0.33 tolerated_low_confidence(0.22) benign(0.021) TCGA-BF-A1PV-01 22 39966904 39966904 C T CACNA1I Silent p.V49V 0.42 TCGA-BF-A1PV-01 22 40054286 40054286 G A CACNA1I Missense_Mutation p.D708N 0.43 deleterious(0) possibly_damaging(0.831) TCGA-BF-A1PV-01 22 44395501 44395501 C T PARVB Silent p.L53L 0.37 TCGA-BF-A1PV-01 22 50217002 50217002 G A BRD1 Missense_Mutation p.R322W 0.46 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 22 50898538 50898538 G A SBF1 Missense_Mutation p.P1112S 0.35 tolerated(0.6) benign(0.015) TCGA-BF-A1PV-01 2 100040690 100040690 G A REV1 Missense_Mutation p.P534S 0.58 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PV-01 2 109382668 109382668 C T RANBP2 Silent p.I1891I 0.35 TCGA-BF-A1PV-01 2 109489947 109489947 A T CCDC138 Missense_Mutation p.L578F 0.57 tolerated(0.52) benign(0) TCGA-BF-A1PV-01 2 111398697 111398697 G A BUB1 Missense_Mutation p.P957S 0.50 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PV-01 2 130832275 130832275 C T POTEF Missense_Mutation p.E924K 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.878) TCGA-BF-A1PV-01 2 137813992 137813992 C T THSD7B Missense_Mutation p.P48S 0.47 tolerated(0.08) possibly_damaging(0.803) TCGA-BF-A1PV-01 2 141986907 141986907 C T LRP1B Missense_Mutation p.G232E 0.67 probably_damaging(0.931) TCGA-BF-A1PV-01 2 155115593 155115593 G A GALNT13 Missense_Mutation p.G306E 0.32 deleterious(0) probably_damaging(0.991) TCGA-BF-A1PV-01 2 155555495 155555495 G A KCNJ3 Missense_Mutation p.D70N 0.35 deleterious(0) possibly_damaging(0.481) TCGA-BF-A1PV-01 2 16085831 16085831 C T MYCN Missense_Mutation p.S336F 0.65 deleterious(0.01) probably_damaging(0.986) TCGA-BF-A1PV-01 2 165584664 165584664 G A COBLL1 Missense_Mutation p.T159I 0.42 deleterious(0) probably_damaging(0.97) TCGA-BF-A1PV-01 2 179638750 179638750 T G TTN Missense_Mutation p.E2382A 0.45 TCGA-BF-A1PV-01 2 185802668 185802668 A G ZNF804A Missense_Mutation p.I849V 0.44 tolerated(0.7) benign(0.001) TCGA-BF-A1PV-01 2 207459597 207459597 G A ADAM23 Missense_Mutation p.D739N 0.43 tolerated(0.29) benign(0.21) TCGA-BF-A1PV-01 2 215852497 215852497 G A ABCA12 Missense_Mutation p.P1284S 0.40 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 2 218999642 218999642 G A CXCR2 Missense_Mutation p.E40K 0.41 tolerated(0.88) benign(0.004) TCGA-BF-A1PV-01 2 228886515 228886515 C T SPHKAP Silent p.T203T 0.54 TCGA-BF-A1PV-01 2 238249496 238249496 G A COL6A3 Missense_Mutation p.S2688F 0.44 unknown(0) TCGA-BF-A1PV-01 2 242077394 242077394 G A PASK Missense_Mutation p.P284S 0.51 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 2 242396209 242396209 C T FARP2 Missense_Mutation p.P487S 0.42 tolerated(0.18) benign(0.014) TCGA-BF-A1PV-01 2 242396210 242396210 C T FARP2 Missense_Mutation p.P487L 0.41 tolerated(0.09) benign(0.272) TCGA-BF-A1PV-01 2 29287774 29287774 G A C2orf71 Silent p.S1276S 0.40 TCGA-BF-A1PV-01 2 31599976 31599976 C T XDH Missense_Mutation p.G457D 0.45 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PV-01 2 31599977 31599977 C T XDH Missense_Mutation p.G457S 0.44 deleterious(0) probably_damaging(0.992) TCGA-BF-A1PV-01 2 47249053 47249053 C T TTC7A Missense_Mutation p.A482V 0.45 deleterious(0.01) benign(0.043) TCGA-BF-A1PV-01 2 47249054 47249054 C T TTC7A Silent p.A482A 0.46 TCGA-BF-A1PV-01 2 60689199 60689199 C T BCL11A Missense_Mutation p.G283E 0.41 tolerated(0.29) possibly_damaging(0.784) TCGA-BF-A1PV-01 2 67631024 67631024 C T ETAA1 Missense_Mutation p.P404S 0.32 tolerated(0.25) benign(0.336) TCGA-BF-A1PV-01 2 80085151 80085151 G A CTNNA2 Missense_Mutation p.R104Q 0.37 tolerated(0.34) benign(0.149) TCGA-BF-A1PV-01 2 96949059 96949059 G A SNRNP200 Missense_Mutation p.P1599S 0.46 tolerated(0.07) benign(0.058) TCGA-BF-A1PV-01 3 100413831 100413831 A G GPR128 Missense_Mutation p.K794E 0.42 deleterious_low_confidence(0.03) benign(0.024) TCGA-BF-A1PV-01 3 109023485 109023485 G A DPPA2 Missense_Mutation p.L231F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1PV-01 3 123987794 123987794 G A KALRN Missense_Mutation p.D219N 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-BF-A1PV-01 3 138022439 138022439 C T NME9 Missense_Mutation p.G219R 0.36 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PV-01 3 147106559 147106559 T C ZIC4 3'UTR 0.43 TCGA-BF-A1PV-01 3 147106609 147106609 G A ZIC4 3'UTR 0.09 TCGA-BF-A1PV-01 3 14813578 14813578 C T C3orf20 Missense_Mutation p.P834S 0.41 tolerated(0.8) benign(0.005) TCGA-BF-A1PV-01 3 16237400 16237400 G A GALNT15 Missense_Mutation p.E225K 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PV-01 3 167510406 167510406 G A SERPINI1 Silent p.R170R 0.42 TCGA-BF-A1PV-01 3 169654200 169654200 G A SAMD7 Missense_Mutation p.G372E 0.25 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.60 tolerated(0.6) benign(0.016) TCGA-BF-A1PV-01 3 19947215 19947215 G A EFHB Missense_Mutation p.P439S 0.41 tolerated(0.8) benign(0.013) TCGA-BF-A1PV-01 3 35723313 35723313 C T ARPP21 Missense_Mutation p.P24S 0.50 tolerated(0.08) possibly_damaging(0.767) TCGA-BF-A1PV-01 3 38158082 38158082 G A DLEC1 Missense_Mutation p.G1332D 0.39 tolerated(0.26) benign(0.015) TCGA-BF-A1PV-01 3 44489458 44489458 G A ZNF445 Missense_Mutation p.L569F 0.31 tolerated(0.39) possibly_damaging(0.587) TCGA-BF-A1PV-01 3 49753064 49753064 C T RNF123 Missense_Mutation p.P1023S 0.37 tolerated(0.6) benign(0.007) TCGA-BF-A1PV-01 3 50327709 50327709 C T IFRD2 Missense_Mutation p.G158S 0.54 tolerated(0.5) benign(0.084) TCGA-BF-A1PV-01 3 8579092 8579092 A G LMCD1 Missense_Mutation p.Y118C 0.37 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PV-01 3 9032423 9032423 G A SRGAP3 Missense_Mutation p.P887S 0.29 tolerated(0.18) probably_damaging(0.996) TCGA-BF-A1PV-01 3 98002205 98002205 C T OR5H2 Silent p.F158F 0.45 TCGA-BF-A1PV-01 3 99568213 99568213 C T FILIP1L Silent p.K769K 0.45 TCGA-BF-A1PV-01 4 104511123 104511123 G A TACR3 Missense_Mutation p.R372C 0.62 tolerated(0.06) benign(0.071) TCGA-BF-A1PV-01 4 110682704 110682704 G A CFI Silent p.F209F 0.37 TCGA-BF-A1PV-01 4 111470779 111470779 G A ENPEP Missense_Mutation p.G774E 0.70 deleterious(0.03) benign(0.151) TCGA-BF-A1PV-01 4 123274140 123274140 C T KIAA1109 Missense_Mutation p.P4644L 0.36 probably_damaging(0.963) TCGA-BF-A1PV-01 4 154625293 154625293 C T TLR2 Silent p.L412L 0.33 TCGA-BF-A1PV-01 4 183522201 183522201 G A TENM3 Silent p.R212R 0.40 TCGA-BF-A1PV-01 4 186544548 186544548 C T SORBS2 Missense_Mutation p.E775K 0.40 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PV-01 4 187197489 187197489 C T F11 Missense_Mutation p.P234S 0.43 deleterious(0.02) probably_damaging(1) TCGA-BF-A1PV-01 4 2900234 2900234 C T ADD1 Silent p.N320N 0.50 TCGA-BF-A1PV-01 4 520987 520987 C T PIGG Silent p.F743F 0.45 TCGA-BF-A1PV-01 4 54966573 54966573 C T GSX2 Missense_Mutation p.S21L 0.29 deleterious(0.02) benign(0.026) TCGA-BF-A1PV-01 4 74353509 74353509 G A AFM Silent p.L228L 0.39 TCGA-BF-A1PV-01 4 89658686 89658686 C T FAM13A Silent p.R861R 0.36 TCGA-BF-A1PV-01 4 89658687 89658687 C T FAM13A Missense_Mutation p.R861Q 0.36 deleterious(0) probably_damaging(0.987) TCGA-BF-A1PV-01 5 1034362 1034362 G A NKD2 Missense_Mutation p.D115N 0.28 tolerated(0.05) possibly_damaging(0.795) TCGA-BF-A1PV-01 5 11159700 11159700 G A CTNND2 Missense_Mutation p.T716I 0.41 deleterious(0.02) benign(0.349) TCGA-BF-A1PV-01 5 112406892 112406892 G A MCC Silent p.T608T 0.38 TCGA-BF-A1PV-01 5 1240746 1240746 A G SLC6A18 Missense_Mutation p.T316A 0.41 tolerated(0.1) benign(0.029) TCGA-BF-A1PV-01 5 140255890 140255890 C T PCDHA12 Missense_Mutation p.S278F 0.45 tolerated_low_confidence(0.42) benign(0.04) TCGA-BF-A1PV-01 5 140431495 140431495 C T PCDHB1 Missense_Mutation p.P147L 0.41 tolerated(0.16) probably_damaging(1) TCGA-BF-A1PV-01 5 156590570 156590570 C T FAM71B Missense_Mutation p.G236R 0.39 deleterious(0.02) possibly_damaging(0.46) TCGA-BF-A1PV-01 5 169116293 169116293 C T DOCK2 Missense_Mutation p.P267S 0.47 deleterious(0.03) possibly_damaging(0.901) TCGA-BF-A1PV-01 5 36049314 36049314 C T UGT3A2 Missense_Mutation p.E174K 0.50 tolerated(0.06) benign(0.21) TCGA-BF-A1PV-01 5 37328482 37328482 G A NUP155 Silent p.S618S 0.45 TCGA-BF-A1PV-01 5 38884043 38884043 C T OSMR Missense_Mutation p.S178F 0.41 deleterious(0.01) probably_damaging(0.935) TCGA-BF-A1PV-01 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.37 TCGA-BF-A1PV-01 5 64920825 64920825 C T CTC-534A2.2 5'UTR 0.33 TCGA-BF-A1PV-01 6 100057179 100057179 G T PRDM13 Missense_Mutation p.E131D 0.85 deleterious(0.05) benign(0.283) TCGA-BF-A1PV-01 6 129371060 129371060 C T LAMA2 Intron 0.60 TCGA-BF-A1PV-01 6 160445692 160445692 C T IGF2R Missense_Mutation p.S201F 0.88 deleterious(0) benign(0.239) TCGA-BF-A1PV-01 6 24447092 24447092 C T GPLD1 Silent p.G598G 0.29 TCGA-BF-A1PV-01 6 25261617 25261617 G A RP3-522P13.3 RNA 0.23 TCGA-BF-A1PV-01 6 28403731 28403731 G A ZSCAN23 Nonsense_Mutation p.Q105* 0.19 TCGA-BF-A1PV-01 6 29012041 29012041 C T OR2W1 Silent p.L304L 0.25 TCGA-BF-A1PV-01 6 31500599 31500599 G C DDX39B Missense_Mutation p.N275K 0.62 tolerated(0.08) benign(0.025) TCGA-BF-A1PV-01 6 31750940 31750940 G A VARS Silent p.I565I 0.27 TCGA-BF-A1PV-01 6 31779021 31779021 G A HSPA1L Silent p.F243F 0.32 TCGA-BF-A1PV-01 6 348139 348139 C T DUSP22 Silent p.I100I 0.15 TCGA-BF-A1PV-01 6 35285757 35285757 G A DEF6 Silent p.Q299Q 0.20 TCGA-BF-A1PV-01 6 40999785 40999785 C T UNC5CL Silent p.R347R 0.26 TCGA-BF-A1PV-01 6 47650081 47650081 C T GPR111 Missense_Mutation p.L596F 0.59 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.35 deleterious(0) probably_damaging(0.91) TCGA-BF-A1PV-01 6 6588994 6588994 C T LY86 Silent p.F9F 0.63 TCGA-BF-A1PV-01 6 73905064 73905064 G A KCNQ5 Missense_Mutation p.R928Q 0.87 tolerated_low_confidence(0.36) benign(0.011) TCGA-BF-A1PV-01 6 7584329 7584329 G A DSP Missense_Mutation p.M2278I 0.25 probably_damaging(0.987) TCGA-BF-A1PV-01 6 88123580 88123580 A G C6ORF165 Missense_Mutation p.K82R 0.63 deleterious(0) possibly_damaging(0.723) TCGA-BF-A1PV-01 7 100484463 100484463 G A SRRT Silent p.L565L 0.45 TCGA-BF-A1PV-01 7 100484465 100484465 T A SRRT Missense_Mutation p.I566N 0.50 deleterious(0) benign(0.119) TCGA-BF-A1PV-01 7 100676391 100676391 C T MUC17 Missense_Mutation p.P565L 0.40 benign(0.235) TCGA-BF-A1PV-01 7 117431239 117431239 C T CTTNBP2 Missense_Mutation p.V671I 0.45 tolerated(0.18) benign(0.007) TCGA-BF-A1PV-01 7 122342642 122342642 C T RNF148 Missense_Mutation p.E55K 0.33 tolerated(0.11) benign(0.121) TCGA-BF-A1PV-01 7 138312175 138312175 G A SVOPL Silent p.F367F 0.40 TCGA-BF-A1PV-01 7 140069425 140069425 T C SLC37A3 Missense_Mutation p.T86A 0.54 tolerated(0.74) benign(0.004) TCGA-BF-A1PV-01 7 141952372 141952372 G A PRSS58 Missense_Mutation p.R166C 0.53 deleterious(0.03) possibly_damaging(0.908) TCGA-BF-A1PV-01 7 143098468 143098468 C T EPHA1 Missense_Mutation p.M127I 0.42 tolerated(0.29) possibly_damaging(0.779) TCGA-BF-A1PV-01 7 148508728 148508728 A T EZH2 Missense_Mutation p.Y646N 0.39 deleterious(0.04) probably_damaging(0.996) TCGA-BF-A1PV-01 7 30668228 30668228 C T GARS Silent p.I584I 0.32 TCGA-BF-A1PV-01 7 31378150 31378150 C T NEUROD6 Missense_Mutation p.E245K 0.45 tolerated(0.2) possibly_damaging(0.874) TCGA-BF-A1PV-01 7 44571751 44571751 C T NPC1L1 Silent p.E825E 0.47 TCGA-BF-A1PV-01 7 44806095 44806095 C T ZMIZ2 Missense_Mutation p.P830S 0.45 tolerated(0.93) benign(0.004) TCGA-BF-A1PV-01 7 45753627 45753627 G A ADCY1 3'UTR 0.50 TCGA-BF-A1PV-01 7 45753628 45753628 G A ADCY1 3'UTR 0.50 TCGA-BF-A1PV-01 7 57522288 57522288 C T ZNF716 Silent p.S54S 0.56 TCGA-BF-A1PV-01 7 72209570 72209570 G A TYW1B Missense_Mutation p.P325S 0.33 deleterious_low_confidence(0.04) benign(0.01) TCGA-BF-A1PV-01 7 94953774 94953774 A G PON1 Missense_Mutation p.I5T 0.34 tolerated(0.19) benign(0) TCGA-BF-A1PV-01 8 100479817 100479817 C T VPS13B Silent p.L1207L 0.41 TCGA-BF-A1PV-01 8 104427557 104427557 C T DCAF13 Silent p.S113S 0.27 TCGA-BF-A1PV-01 8 114185975 114185975 C T CSMD3 Missense_Mutation p.D229N 0.34 tolerated(0.51) probably_damaging(0.931) TCGA-BF-A1PV-01 8 119391893 119391893 C T SAMD12 Silent p.G123G 0.25 TCGA-BF-A1PV-01 8 121381693 121381693 C T COL14A1 Silent p.D1760D 0.22 TCGA-BF-A1PV-01 8 121502729 121502729 C T MTBP Missense_Mutation p.P456S 0.50 deleterious(0) benign(0.046) TCGA-BF-A1PV-01 8 121502730 121502730 C T MTBP Missense_Mutation p.P456L 0.47 deleterious(0) benign(0.116) TCGA-BF-A1PV-01 8 125107223 125107223 C T FER1L6 Missense_Mutation p.P1547S 0.65 deleterious(0) possibly_damaging(0.847) TCGA-BF-A1PV-01 8 139164878 139164878 C T FAM135B Missense_Mutation p.E614K 0.22 deleterious(0.03) possibly_damaging(0.627) TCGA-BF-A1PV-01 8 143993405 143993405 C T CYP11B2 Silent p.A501A 0.28 TCGA-BF-A1PV-01 8 17161938 17161938 C T MTMR7 Silent p.Q481Q 0.25 TCGA-BF-A1PV-01 8 1857613 1857613 C T ARHGEF10 Missense_Mutation p.A707V 0.24 tolerated(0.06) benign(0.031) TCGA-BF-A1PV-01 8 2807767 2807767 C T CSMD1 Missense_Mutation p.G3434R 0.16 benign(0.047) TCGA-BF-A1PV-01 8 3889491 3889491 G A CSMD1 Silent p.I182I 0.24 TCGA-BF-A1PV-01 8 42608319 42608319 A G CHRNA6 3'UTR 0.16 TCGA-BF-A1PV-01 8 52320774 52320774 G A PXDNL Missense_Mutation p.S1137L 0.66 tolerated(1) benign(0) TCGA-BF-A1PV-01 8 61654288 61654288 G C CHD7 Silent p.A99A 0.71 TCGA-BF-A1PV-01 8 65291803 65291803 G A MIR124-2 RNA 0.14 TCGA-BF-A1PV-01 9 107380132 107380132 C T OR13C9 Missense_Mutation p.M118I 0.72 deleterious(0.01) benign(0.118) TCGA-BF-A1PV-01 9 108123565 108123565 A G SLC44A1 Missense_Mutation p.N285S 0.32 tolerated(0.09) benign(0.043) TCGA-BF-A1PV-01 9 113170312 113170312 G A SVEP1 Missense_Mutation p.S2523F 0.67 benign(0.02) TCGA-BF-A1PV-01 9 133370310 133370310 G A ASS1 Missense_Mutation p.E343K 0.59 tolerated(0.55) benign(0.025) TCGA-BF-A1PV-01 9 135940078 135940078 C T CEL Missense_Mutation p.T93I 0.23 tolerated(0.22) possibly_damaging(0.79) TCGA-BF-A1PV-01 9 136298631 136298631 G A ADAMTS13 Missense_Mutation p.R409Q 0.11 deleterious(0) probably_damaging(0.982) TCGA-BF-A1PV-01 9 136672436 136672436 G A VAV2 Missense_Mutation p.P227S 0.60 deleterious(0) possibly_damaging(0.872) TCGA-BF-A1PV-01 9 137801662 137801662 C T FCN1 Missense_Mutation p.M321I 0.32 deleterious(0.04) probably_damaging(0.985) TCGA-BF-A1PV-01 9 23765034 23765034 A G ELAVL2 Intron 0.29 TCGA-BF-A1PV-01 9 32631964 32631964 C T TAF1L Missense_Mutation p.R1205Q 0.34 deleterious(0.01) benign(0.03) TCGA-BF-A1PV-01 9 33442346 33442346 G A AQP3 Silent p.G221G 0.38 TCGA-BF-A1PV-01 9 35825669 35825669 C T FAM221B Missense_Mutation p.V164I 0.50 tolerated(0.34) benign(0.076) TCGA-BF-A1PV-01 9 4118848 4118848 C T GLIS3 Silent p.T210T 0.46 TCGA-BF-A1PV-01 9 71606060 71606060 G A PIP5K1B Missense_Mutation p.G503R 0.53 tolerated_low_confidence(0.16) benign(0.157) TCGA-BF-A1PV-01 9 72755146 72755146 G A MAMDC2 Nonsense_Mutation p.W360* 0.45 TCGA-BF-A1PV-01 9 78965799 78965799 G A PCSK5 Silent p.G1647G 0.23 TCGA-BF-A1PV-01 9 79321264 79321264 G A PRUNE2 Missense_Mutation p.H1976Y 0.28 tolerated(0.06) benign(0.014) TCGA-BF-A1PV-01 9 79323983 79323983 A G PRUNE2 Silent p.D1069D 0.53 TCGA-BF-A1PV-01 9 79984267 79984267 C T VPS13A Missense_Mutation p.P2869L 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A1PV-01 9 85958140 85958140 G A FRMD3 Missense_Mutation p.S146F 0.38 deleterious(0) benign(0.255) TCGA-BF-A1PV-01 9 95165623 95165623 T C OGN Missense_Mutation p.T23A 0.16 tolerated(0.96) benign(0) TCGA-BF-A1PV-01 9 990589 990589 C T DMRT3 Nonsense_Mutation p.R335* 0.60 TCGA-BF-A1PV-01 X 100608220 100608220 C T BTK Missense_Mutation p.E624K 0.43 tolerated(0.32) benign(0.175) TCGA-BF-A1PV-01 X 102842186 102842186 C T TCEAL4 Missense_Mutation p.P195S 0.45 tolerated(0.12) possibly_damaging(0.55) TCGA-BF-A1PV-01 X 119077457 119077459 GCG - NKAP In_Frame_Del p.P37del 0.38 TCGA-BF-A1PV-01 X 122747910 122747910 C T THOC2 Missense_Mutation p.R1481Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-BF-A1PV-01 X 12704292 12704292 C T FRMPD4 Missense_Mutation p.S217L 0.45 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PV-01 X 12906165 12906165 C T TLR7 Silent p.S846S 0.36 TCGA-BF-A1PV-01 X 129146564 129146564 C T BCORL1 Missense_Mutation p.L33F 0.37 unknown(0) TCGA-BF-A1PV-01 X 132670265 132670265 G A GPC3 Missense_Mutation p.P567S 0.46 tolerated(0.81) benign(0.01) TCGA-BF-A1PV-01 X 135427542 135427542 C T GPR112 Silent p.F559F 0.55 TCGA-BF-A1PV-01 X 135428482 135428482 G A GPR112 Missense_Mutation p.E873K 0.56 deleterious(0.03) possibly_damaging(0.734) TCGA-BF-A1PV-01 X 139586840 139586840 C G SOX3 Missense_Mutation p.G129A 0.11 tolerated(0.29) probably_damaging(0.981) TCGA-BF-A1PV-01 X 142795479 142795479 G A SPANXN2 Nonsense_Mutation p.Q67* 0.44 TCGA-BF-A1PV-01 X 149831957 149831957 G A MTM1 Missense_Mutation p.E507K 0.31 tolerated(0.27) benign(0) TCGA-BF-A1PV-01 X 153170623 153170623 C T AVPR2 Silent p.S8S 0.35 TCGA-BF-A1PV-01 X 153595841 153595841 G A FLNA Silent p.F264F 0.40 TCGA-BF-A1PV-01 X 23398304 23398304 G A PTCHD1 Silent p.G316G 0.35 TCGA-BF-A1PV-01 X 24225559 24225560 - T ZFX Frame_Shift_Ins p.K257* 0.29 TCGA-BF-A1PV-01 X 35971783 35971783 C T CXorf22 Missense_Mutation p.S374F 0.62 tolerated(0.11) benign(0.033) TCGA-BF-A1PV-01 X 53612009 53612009 C T HUWE1 Missense_Mutation p.R1655Q 0.42 probably_damaging(0.998) TCGA-BF-A1PV-01 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.72 TCGA-BF-A1PV-01 X 63410535 63410535 G A AMER1 Silent p.L878L 0.33 TCGA-BF-A1PV-01 X 64955230 64955230 C T MSN Silent p.T299T 0.25 TCGA-BF-A1PV-01 X 73960249 73960249 G A KIAA2022 Silent p.I1381I 0.48 TCGA-BF-A1PV-01 X 75004042 75004042 G T MAGEE2 Missense_Mutation p.P282Q 0.52 deleterious(0.02) possibly_damaging(0.642) TCGA-BF-A1PX-01 10 115337887 115337887 G A HABP2 Missense_Mutation p.G184E 0.23 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 10 12940532 12940532 T G CCDC3 Missense_Mutation p.K233Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-BF-A1PX-01 10 29599964 29599964 G A LYZL1 Nonsense_Mutation p.W187* 0.08 TCGA-BF-A1PX-01 10 51585487 51585487 C T NCOA4 Missense_Mutation p.T545I 0.09 tolerated(0.19) benign(0.064) TCGA-BF-A1PX-01 10 73406336 73406336 G A CDH23 Missense_Mutation p.E63K 0.10 deleterious(0.01) probably_damaging(0.951) TCGA-BF-A1PX-01 10 73406389 73406389 C T CDH23 Silent p.F488F 0.10 TCGA-BF-A1PX-01 10 95347082 95347082 C T FFAR4 Missense_Mutation p.L284F 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-BF-A1PX-01 10 99139485 99139485 G A RRP12 Missense_Mutation p.P526S 0.20 tolerated(0.26) benign(0.028) TCGA-BF-A1PX-01 11 105623907 105623907 G A GRIA4 Missense_Mutation p.E150K 0.21 tolerated(1) benign(0.003) TCGA-BF-A1PX-01 11 106558458 106558458 G A GUCY1A2 Silent p.F703F 0.16 TCGA-BF-A1PX-01 11 111855995 111855995 G A DIXDC1 Missense_Mutation p.E319K 0.18 tolerated(0.09) benign(0.236) TCGA-BF-A1PX-01 11 116691864 116691864 G A APOA4 Nonsense_Mutation p.R304* 0.13 TCGA-BF-A1PX-01 11 117261579 117261579 G A CEP164 Missense_Mutation p.R674Q 0.11 deleterious(0.05) probably_damaging(0.963) TCGA-BF-A1PX-01 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.10 tolerated(0.16) benign(0.04) TCGA-BF-A1PX-01 11 118498078 118498078 C T PHLDB1 Missense_Mutation p.P180L 0.16 deleterious(0.02) benign(0.028) TCGA-BF-A1PX-01 11 118922275 118922275 C T HYOU1 Silent p.R467R 0.12 TCGA-BF-A1PX-01 11 118922276 118922276 C T HYOU1 Missense_Mutation p.R467Q 0.15 deleterious(0) probably_damaging(0.969) TCGA-BF-A1PX-01 11 123847469 123847469 C T OR10S1 Silent p.K310K 0.14 TCGA-BF-A1PX-01 11 124413287 124413287 C T OR8B12 Silent p.K88K 0.09 TCGA-BF-A1PX-01 11 124440858 124440858 C T OR8A1 Silent p.I298I 0.18 TCGA-BF-A1PX-01 11 1265747 1265747 G A MUC5B Missense_Mutation p.G2546D 0.14 unknown(0) TCGA-BF-A1PX-01 11 19187864 19187864 A G ZDHHC13 Missense_Mutation p.H469R 0.12 tolerated(1) benign(0.001) TCGA-BF-A1PX-01 11 2156739 2156739 C T IGF2 Missense_Mutation p.M61I 0.18 deleterious(0.02) benign(0.005) TCGA-BF-A1PX-01 11 55322146 55322146 C T OR4C15 Silent p.L122L 0.10 TCGA-BF-A1PX-01 11 55606700 55606700 C T OR5D16 Missense_Mutation p.S158F 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-BF-A1PX-01 11 55798623 55798623 C T OR5AS1 Silent p.S243S 0.12 TCGA-BF-A1PX-01 11 56058290 56058290 C T OR8H1 Silent p.A83A 0.07 TCGA-BF-A1PX-01 11 56756415 56756415 C T OR5AK2 Silent p.V9V 0.14 TCGA-BF-A1PX-01 11 58035019 58035019 G A OR10W1 Silent p.F104F 0.18 TCGA-BF-A1PX-01 11 58714518 58714518 G A GLYATL1 Splice_Site p.X50_splice 0.09 TCGA-BF-A1PX-01 11 5968762 5968762 C T OR56A3 Silent p.P62P 0.12 TCGA-BF-A1PX-01 11 61254516 61254516 G A PPP1R32 Missense_Mutation p.E311K 0.13 tolerated(0.23) possibly_damaging(0.713) TCGA-BF-A1PX-01 11 62532814 62532814 C T POLR2G Silent p.S112S 0.11 TCGA-BF-A1PX-01 11 64087253 64087253 G A PRDX5 Silent p.G73G 0.13 TCGA-BF-A1PX-01 11 64668062 64668062 G A ATG2A Silent p.S1456S 0.09 TCGA-BF-A1PX-01 11 65793650 65793650 G A CATSPER1 Silent p.H67H 0.12 TCGA-BF-A1PX-01 11 66191942 66191942 C T NPAS4 Silent p.A527A 0.08 TCGA-BF-A1PX-01 11 66191943 66191943 C T NPAS4 Missense_Mutation p.H528Y 0.08 tolerated_low_confidence(0.4) benign(0.01) TCGA-BF-A1PX-01 11 67219361 67219361 A G GPR152 Missense_Mutation p.Y279H 0.16 tolerated(0.13) probably_damaging(1) TCGA-BF-A1PX-01 11 6867192 6867192 C T OR10A5 Silent p.I93I 0.10 TCGA-BF-A1PX-01 11 73074358 73074358 C T ARHGEF17 Missense_Mutation p.P1702S 0.17 tolerated(0.86) benign(0.036) TCGA-BF-A1PX-01 11 73748620 73748620 G A C2CD3 Silent p.D1928D 0.16 TCGA-BF-A1PX-01 11 78380468 78380468 G A TENM4 Missense_Mutation p.H2308Y 0.12 deleterious(0) benign(0.266) TCGA-BF-A1PX-01 11 92592355 92592355 G A FAT3 Missense_Mutation p.G3842E 0.14 probably_damaging(1) TCGA-BF-A1PX-01 11 93088569 93088569 T C CCDC67 Missense_Mutation p.L21S 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 11 94353025 94353025 G A PIWIL4 Silent p.V756V 0.14 TCGA-BF-A1PX-01 12 104111553 104111553 C T STAB2 Silent p.A1539A 0.09 TCGA-BF-A1PX-01 12 109530455 109530455 G A ALKBH2 Missense_Mutation p.P46L 0.14 tolerated_low_confidence(0.23) benign(0.001) TCGA-BF-A1PX-01 12 118198993 118198993 G A KSR2 Missense_Mutation p.T270I 0.12 deleterious(0.03) possibly_damaging(0.716) TCGA-BF-A1PX-01 12 118517355 118517355 A G VSIG10 Silent p.L241L 0.17 TCGA-BF-A1PX-01 12 124350550 124350550 T C DNAH10 Missense_Mutation p.V2248A 0.08 probably_damaging(0.936) TCGA-BF-A1PX-01 12 130847340 130847340 G A PIWIL1 Missense_Mutation p.R667K 0.14 tolerated(0.93) benign(0.026) TCGA-BF-A1PX-01 12 133233953 133233953 G A POLE Silent p.I1147I 0.11 TCGA-BF-A1PX-01 12 22199428 22199428 A G CMAS Missense_Mutation p.K64R 0.16 deleterious(0.01) benign(0.051) TCGA-BF-A1PX-01 12 53647900 53647900 C T MFSD5 Silent p.F534F 0.13 TCGA-BF-A1PX-01 12 57969485 57969485 C T KIF5A Silent p.H656H 0.12 TCGA-BF-A1PX-01 12 57969486 57969486 C T KIF5A Silent p.L657L 0.12 TCGA-BF-A1PX-01 12 63114014 63114014 C T PPM1H Missense_Mutation p.R337K 0.09 tolerated(0.06) possibly_damaging(0.634) TCGA-BF-A1PX-01 12 65514233 65514233 G A WIF1 Silent p.I84I 0.12 TCGA-BF-A1PX-01 12 6571309 6571309 C A TAPBPL Silent p.P467P 0.19 TCGA-BF-A1PX-01 12 7585054 7585054 G A CD163L1 Missense_Mutation p.H242Y 0.15 tolerated(0.21) benign(0.391) TCGA-BF-A1PX-01 12 7982503 7982503 G A SLC2A14 Silent p.G147G 0.20 TCGA-BF-A1PX-01 12 97147664 97147664 C T C12orf55 Missense_Mutation p.L2610F 0.11 deleterious(0.05) benign(0.004) TCGA-BF-A1PX-01 13 100020041 100020041 G A UBAC2 Missense_Mutation p.G270R 0.10 deleterious(0.05) benign(0.063) TCGA-BF-A1PX-01 13 23904564 23904564 G A SACS Missense_Mutation p.A4484V 0.10 probably_damaging(0.994) TCGA-BF-A1PX-01 13 24470978 24470978 C T C1QTNF9B Missense_Mutation p.G50S 0.12 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 13 25484108 25484108 C T CENPJ Missense_Mutation p.E229K 0.14 tolerated(0.13) benign(0.164) TCGA-BF-A1PX-01 13 25671984 25671984 C T PABPC3 Missense_Mutation p.P550S 0.12 deleterious(0.03) probably_damaging(0.941) TCGA-BF-A1PX-01 13 26152961 26152961 G A ATP8A2 Silent p.V597V 0.13 TCGA-BF-A1PX-01 13 42142384 42142384 G A VWA8 Silent p.I1889I 0.12 TCGA-BF-A1PX-01 13 43462503 43462503 G A EPSTI1 Silent p.D372D 0.27 TCGA-BF-A1PX-01 13 77672557 77672557 G A MYCBP2 Missense_Mutation p.S2873F 0.10 benign(0.019) TCGA-BF-A1PX-01 13 95858972 95858972 G A ABCC4 Silent p.F325F 0.09 TCGA-BF-A1PX-01 13 96293836 96293836 C T DZIP1 Missense_Mutation p.E104K 0.15 deleterious(0) probably_damaging(0.995) TCGA-BF-A1PX-01 14 105415514 105415514 C T AHNAK2 Missense_Mutation p.D2092N 0.21 benign(0.266) TCGA-BF-A1PX-01 14 20215844 20215844 C T OR4Q3 Silent p.F86F 0.09 TCGA-BF-A1PX-01 14 20295781 20295781 C T OR4N2 Silent p.P58P 0.10 TCGA-BF-A1PX-01 14 20388883 20388883 C T OR4K5 Silent p.L40L 0.12 TCGA-BF-A1PX-01 14 23863388 23863388 G A MYH6 Silent p.F858F 0.13 TCGA-BF-A1PX-01 14 23865537 23865537 C G MYH6 Silent p.R795R 0.14 TCGA-BF-A1PX-01 14 45564426 45564426 C T PRPF39 Intron 0.10 TCGA-BF-A1PX-01 14 60074019 60074019 C T RTN1 Missense_Mutation p.E653K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 14 60591538 60591538 C T PCNXL4 Silent p.Y649Y 0.11 TCGA-BF-A1PX-01 14 63174561 63174561 C T KCNH5 Missense_Mutation p.A878T 0.11 deleterious_low_confidence(0.02) benign(0.197) TCGA-BF-A1PX-01 14 63174974 63174974 G A KCNH5 Missense_Mutation p.S740F 0.10 deleterious(0.03) benign(0.034) TCGA-BF-A1PX-01 14 70635016 70635016 C T SLC8A3 Missense_Mutation p.G42R 0.20 tolerated(0.07) benign(0.082) TCGA-BF-A1PX-01 14 70990201 70990201 G A ADAM20 Missense_Mutation p.T475I 0.16 deleterious(0.01) benign(0.189) TCGA-BF-A1PX-01 14 75200829 75200829 C T FCF1 Silent p.I168I 0.10 TCGA-BF-A1PX-01 14 81302605 81302605 G A CEP128 Missense_Mutation p.S334F 0.20 deleterious(0) possibly_damaging(0.902) TCGA-BF-A1PX-01 14 88477602 88477602 C T GPR65 Silent p.S137S 0.10 TCGA-BF-A1PX-01 14 91739956 91739956 G A CCDC88C Silent p.F1700F 0.21 TCGA-BF-A1PX-01 14 92159768 92159768 C T CATSPERB Nonsense_Mutation p.W224* 0.12 TCGA-BF-A1PX-01 14 93954060 93954060 C T UNC79 Missense_Mutation p.S47L 0.10 deleterious(0) benign(0.167) TCGA-BF-A1PX-01 15 101169997 101169997 C T ASB7 Silent p.I189I 0.14 TCGA-BF-A1PX-01 15 20170215 20170215 G A IGHV1OR15-9 Silent p.S19S 0.25 TCGA-BF-A1PX-01 15 25296640 25296640 C T SNORD116-1 RNA 0.08 TCGA-BF-A1PX-01 15 42439446 42439446 C T PLA2G4F Missense_Mutation p.G432E 0.29 deleterious(0.01) possibly_damaging(0.758) TCGA-BF-A1PX-01 15 43893725 43893725 G A STRC Missense_Mutation p.R1524C 0.22 deleterious(0) possibly_damaging(0.885) TCGA-BF-A1PX-01 15 50152396 50152396 G A ATP8B4 Silent p.L1192L 0.17 TCGA-BF-A1PX-01 15 54305845 54305845 G A UNC13C Missense_Mutation p.E249K 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BF-A1PX-01 15 54306429 54306429 G A UNC13C Silent p.K443K 0.17 TCGA-BF-A1PX-01 15 55930818 55930818 G A PRTG Missense_Mutation p.A794V 0.13 tolerated(0.1) benign(0.381) TCGA-BF-A1PX-01 15 72105937 72105937 G A CTD-2524L6.3 5'Flank 0.17 TCGA-BF-A1PX-01 15 84651976 84651976 G A ADAMTSL3 Missense_Mutation p.G1199E 0.12 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 16 20975459 20975459 G A DNAH3 Silent p.S3249S 0.15 TCGA-BF-A1PX-01 16 21273358 21273358 C T CRYM Silent p.G265G 0.12 TCGA-BF-A1PX-01 16 22285017 22285017 C T EEF2K Missense_Mutation p.S612F 0.19 deleterious(0) possibly_damaging(0.542) TCGA-BF-A1PX-01 16 24831512 24831512 C T TNRC6A Silent p.T1711T 0.07 TCGA-BF-A1PX-01 16 28916817 28916817 G A RABEP2 Silent p.L503L 0.12 TCGA-BF-A1PX-01 16 3614572 3614572 G A NLRC3 Silent p.V169V 0.12 TCGA-BF-A1PX-01 16 3823809 3823809 G A CREBBP Silent p.S802S 0.10 TCGA-BF-A1PX-01 16 3823810 3823810 G A CREBBP Missense_Mutation p.S802F 0.10 probably_damaging(0.921) TCGA-BF-A1PX-01 16 5110414 5110414 C T C16orf89 Missense_Mutation p.G128R 0.10 tolerated(0.06) probably_damaging(0.995) TCGA-BF-A1PX-01 16 68224858 68224858 C T NFATC3 Silent p.S762S 0.13 TCGA-BF-A1PX-01 16 71570929 71570929 C T CHST4 Missense_Mutation p.P117S 0.25 tolerated(0.37) benign(0.219) TCGA-BF-A1PX-01 16 81045558 81045558 T C CENPN Missense_Mutation p.V5A 0.14 tolerated(0.19) benign(0.189) TCGA-BF-A1PX-01 16 85141674 85141674 G A FAM92B Missense_Mutation p.P96L 0.20 deleterious(0) probably_damaging(0.991) TCGA-BF-A1PX-01 17 11660968 11660968 C T DNAH9 Silent p.F2318F 0.22 TCGA-BF-A1PX-01 17 16469860 16469860 C T ZNF287 Nonsense_Mutation p.W160* 0.10 TCGA-BF-A1PX-01 17 1657539 1657539 C T SERPINF2 Missense_Mutation p.A396V 0.12 tolerated(0.07) possibly_damaging(0.687) TCGA-BF-A1PX-01 17 18029750 18029750 G A MYO15A Silent p.R1282R 0.13 TCGA-BF-A1PX-01 17 28537552 28537552 G A SLC6A4 Missense_Mutation p.S477F 0.14 deleterious(0) probably_damaging(0.932) TCGA-BF-A1PX-01 17 3301630 3301630 G A OR1E1 Silent p.N25N 0.11 TCGA-BF-A1PX-01 17 35988707 35988707 C T DDX52 Missense_Mutation p.E253K 0.08 deleterious(0) probably_damaging(0.994) TCGA-BF-A1PX-01 17 38991348 38991348 C T TMEM99 Missense_Mutation p.H194Y 0.11 deleterious_low_confidence(0) benign(0.291) TCGA-BF-A1PX-01 17 40467771 40467771 G A STAT3 Missense_Mutation p.P769S 0.12 deleterious_low_confidence(0) benign(0.017) TCGA-BF-A1PX-01 17 46022027 46022027 G A PNPO Silent p.G103G 0.14 TCGA-BF-A1PX-01 17 46233855 46233855 A G SKAP1 Intron 0.12 TCGA-BF-A1PX-01 17 55193620 55193620 C T AKAP1 Silent p.I810I 0.13 TCGA-BF-A1PX-01 17 57043082 57043082 C T PPM1E Missense_Mutation p.S204F 0.15 tolerated(0.7) benign(0.314) TCGA-BF-A1PX-01 17 59668329 59668329 C T NACA2 Silent p.R71R 0.11 TCGA-BF-A1PX-01 17 59668330 59668330 C T NACA2 Missense_Mutation p.R71Q 0.11 tolerated(0.07) benign(0.018) TCGA-BF-A1PX-01 17 60060354 60060354 G A MED13 Missense_Mutation p.P1004S 0.14 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PX-01 17 6023963 6023963 G A WSCD1 Silent p.R570R 0.18 TCGA-BF-A1PX-01 17 60472490 60472490 C T EFCAB3 Silent p.I195I 0.16 TCGA-BF-A1PX-01 17 61994627 61994627 G A GH1 3'UTR 0.33 TCGA-BF-A1PX-01 17 7722089 7722089 C T DNAH2 Silent p.I3555I 0.14 TCGA-BF-A1PX-01 17 9792722 9792722 C T GLP2R Silent p.F454F 0.18 TCGA-BF-A1PX-01 18 32954147 32954147 T A ZNF396 Missense_Mutation p.D37V 0.10 tolerated(0.13) probably_damaging(0.972) TCGA-BF-A1PX-01 18 33952695 33952695 C T FHOD3 Missense_Mutation p.H109Y 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-BF-A1PX-01 18 43843018 43843018 T A C18orf25 Silent p.A383A 0.12 TCGA-BF-A1PX-01 18 45566864 45566864 C T ZBTB7C Silent p.R205R 0.15 TCGA-BF-A1PX-01 18 54293650 54293650 G A TXNL1 Missense_Mutation p.S46F 0.13 deleterious(0.02) benign(0.239) TCGA-BF-A1PX-01 18 56586307 56586307 C T ZNF532 Missense_Mutation p.S263L 0.15 deleterious(0.03) benign(0.115) TCGA-BF-A1PX-01 18 580932 580932 G C CETN1 3'UTR 0.09 TCGA-BF-A1PX-01 18 61471612 61471612 C T SERPINB7 Silent p.L296L 0.11 TCGA-BF-A1PX-01 18 76752127 76752127 G A SALL3 Missense_Mutation p.G46R 0.24 tolerated(0.08) unknown(0) TCGA-BF-A1PX-01 18 9557295 9557295 G A PPP4R1 Missense_Mutation p.P705L 0.11 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 18 9557296 9557296 G A PPP4R1 Missense_Mutation p.P705S 0.10 deleterious(0) probably_damaging(0.99) TCGA-BF-A1PX-01 19 11468409 11468409 C T DKFZP761J1410 Silent p.F20F 0.24 TCGA-BF-A1PX-01 19 22155257 22155257 G A ZNF208 Missense_Mutation p.P860L 0.10 tolerated(0.06) unknown(0) TCGA-BF-A1PX-01 19 36395500 36395500 G A TYROBP Missense_Mutation p.L105F 0.15 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 19 37101568 37101568 G A ZNF382 Silent p.K52K 0.11 TCGA-BF-A1PX-01 19 37677377 37677377 G A ZNF585B Silent p.S354S 0.09 TCGA-BF-A1PX-01 19 39819094 39819094 G A GMFG 3'UTR 0.13 TCGA-BF-A1PX-01 19 42231208 42231208 G A CEACAM5 Missense_Mutation p.G694E 0.12 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-BF-A1PX-01 19 42558499 42558499 C T GRIK5 Silent p.G343G 0.14 TCGA-BF-A1PX-01 19 43233378 43233378 A G PSG3 Silent p.F380F 0.10 TCGA-BF-A1PX-01 19 43358384 43358384 C T PSG10P RNA 0.14 TCGA-BF-A1PX-01 19 44934623 44934623 C T ZNF229 Silent p.E111E 0.11 TCGA-BF-A1PX-01 19 45315759 45315759 C T BCAM Missense_Mutation p.S153F 0.12 tolerated(0.43) benign(0.033) TCGA-BF-A1PX-01 19 45406280 45406280 C T TOMM40 Intron 0.15 TCGA-BF-A1PX-01 19 46307945 46307945 G A RSPH6A Silent p.S406S 0.13 TCGA-BF-A1PX-01 19 48339542 48339542 G A CRX Missense_Mutation p.R48Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1PX-01 19 49639176 49639176 C T PPFIA3 Missense_Mutation p.S554F 0.28 deleterious(0.01) possibly_damaging(0.553) TCGA-BF-A1PX-01 19 52249706 52249706 G A FPR1 Missense_Mutation p.S181L 0.14 tolerated(0.26) benign(0.309) TCGA-BF-A1PX-01 19 52249918 52249918 G A FPR1 Silent p.F110F 0.10 TCGA-BF-A1PX-01 19 54080048 54080048 C T ZNF331 Silent p.S78S 0.08 TCGA-BF-A1PX-01 19 54783331 54783331 G A LILRB2 Missense_Mutation p.S176L 0.12 tolerated(0.07) benign(0.016) TCGA-BF-A1PX-01 19 54802724 54802724 C T LILRA3 Silent p.G239G 0.15 TCGA-BF-A1PX-01 19 55175697 55175697 G A LILRB4 Missense_Mutation p.S139N 0.21 tolerated(1) benign(0) TCGA-BF-A1PX-01 19 56410190 56410190 C T NLRP13 Missense_Mutation p.G968E 0.10 deleterious(0) probably_damaging(0.922) TCGA-BF-A1PX-01 19 57646475 57646475 C T ZIM3 Silent p.Q410Q 0.08 TCGA-BF-A1PX-01 19 9064628 9064628 C T MUC16 Silent p.R7606R 0.19 TCGA-BF-A1PX-01 19 9083281 9083281 G A MUC16 Missense_Mutation p.P2845L 0.18 unknown(0) TCGA-BF-A1PX-01 19 9088334 9088334 G A MUC16 Missense_Mutation p.P1161S 0.16 unknown(0) TCGA-BF-A1PX-01 1 101705419 101705419 G A S1PR1 Silent p.A293A 0.14 TCGA-BF-A1PX-01 1 111957374 111957374 G A OVGP1 Silent p.V583V 0.14 TCGA-BF-A1PX-01 1 119927555 119927555 C T HAO2 Missense_Mutation p.S147F 0.15 deleterious(0.01) possibly_damaging(0.811) TCGA-BF-A1PX-01 1 119936434 119936434 C T HAO2 Nonsense_Mutation p.R343* 0.12 TCGA-BF-A1PX-01 1 120437452 120437452 C T ADAM30 Missense_Mutation p.R503K 0.10 tolerated(0.08) possibly_damaging(0.474) TCGA-BF-A1PX-01 1 12175638 12175638 C A TNFRSF8 Missense_Mutation p.D266E 0.07 deleterious(0.01) possibly_damaging(0.793) TCGA-BF-A1PX-01 1 12855615 12855615 G A PRAMEF1 Missense_Mutation p.E299K 0.08 tolerated(0.06) benign(0.385) TCGA-BF-A1PX-01 1 12888536 12888536 G A PRAMEF11 5'UTR 0.11 TCGA-BF-A1PX-01 1 145273351 145273351 C T NOTCH2NL Missense_Mutation p.P69S 0.04 tolerated(0.07) possibly_damaging(0.622) TCGA-BF-A1PX-01 1 151110223 151110223 G A SEMA6C Silent p.F240F 0.16 TCGA-BF-A1PX-01 1 151677575 151677575 C T CELF3 Missense_Mutation p.G447D 0.13 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 1 153998161 153998161 G A NUP210L Missense_Mutation p.L1327F 0.10 deleterious(0) probably_damaging(0.939) TCGA-BF-A1PX-01 1 156268578 156268578 G A VHLL Silent p.L135L 0.11 TCGA-BF-A1PX-01 1 157556203 157556203 C T FCRL4 Missense_Mutation p.G297E 0.09 tolerated(0.28) benign(0.048) TCGA-BF-A1PX-01 1 15802594 15802594 C T CELA2A 3'Flank 0.11 TCGA-BF-A1PX-01 1 160518109 160518109 C T CD84 Missense_Mutation p.M325I 0.13 tolerated(0.22) benign(0.007) TCGA-BF-A1PX-01 1 160801166 160801166 C T CD244 Missense_Mutation p.E362K 0.10 deleterious(0.04) possibly_damaging(0.9) TCGA-BF-A1PX-01 1 172348277 172348277 C T DNM3 Silent p.I671I 0.16 TCGA-BF-A1PX-01 1 179462017 179462017 G A AXDND1 Missense_Mutation p.M773I 0.14 tolerated(0.84) benign(0) TCGA-BF-A1PX-01 1 179620142 179620142 C T TDRD5 Silent p.F647F 0.10 TCGA-BF-A1PX-01 1 181741317 181741317 G A CACNA1E Missense_Mutation p.D1697N 0.09 tolerated(0.08) possibly_damaging(0.831) TCGA-BF-A1PX-01 1 184792371 184792371 C T FAM129A Silent p.L305L 0.18 TCGA-BF-A1PX-01 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.11 tolerated(0.08) benign(0.001) TCGA-BF-A1PX-01 1 220156683 220156683 G A EPRS Missense_Mutation p.R1050C 0.09 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PX-01 1 228596831 228596831 G A TRIM17 Intron 0.13 TCGA-BF-A1PX-01 1 22974316 22974316 C T C1QC 3'UTR 0.17 TCGA-BF-A1PX-01 1 234452397 234452397 C T SLC35F3 Missense_Mutation p.A293V 0.12 deleterious(0.02) probably_damaging(0.972) TCGA-BF-A1PX-01 1 244217908 244217908 C T ZBTB18 Silent p.L278L 0.13 TCGA-BF-A1PX-01 1 247920941 247920941 G A OR1C1 Silent p.I256I 0.14 TCGA-BF-A1PX-01 1 248224258 248224258 C T OR2L3 Missense_Mutation p.S92F 0.09 deleterious(0) benign(0.172) TCGA-BF-A1PX-01 1 27709047 27709047 C T CD164L2 Missense_Mutation p.D67N 0.20 tolerated(0.32) benign(0.006) TCGA-BF-A1PX-01 1 27943786 27943786 C T FGR Silent p.G150G 0.16 TCGA-BF-A1PX-01 1 34015885 34015885 C T CSMD2 Missense_Mutation p.G2793R 0.17 tolerated(0.06) probably_damaging(0.971) TCGA-BF-A1PX-01 1 35369961 35369961 C T DLGAP3 Missense_Mutation p.D342N 0.14 deleterious(0) benign(0.202) TCGA-BF-A1PX-01 1 38227053 38227053 C A EPHA10 Intron 0.19 TCGA-BF-A1PX-01 1 40312931 40312931 G A TRIT1 Missense_Mutation p.R323W 0.10 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 1 40312932 40312932 G A TRIT1 Silent p.A322A 0.11 TCGA-BF-A1PX-01 1 43896717 43896717 C T SZT2 Silent p.P1567P 0.10 TCGA-BF-A1PX-01 1 44360079 44360079 C T ST3GAL3 Silent p.F178F 0.12 TCGA-BF-A1PX-01 1 44360080 44360080 C T ST3GAL3 Silent p.L179L 0.12 TCGA-BF-A1PX-01 1 53542943 53542943 C T PODN Silent p.V269V 0.10 TCGA-BF-A1PX-01 1 59139288 59139288 C T MYSM1 Missense_Mutation p.G510E 0.10 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PX-01 1 6172219 6172219 G A CHD5 Silent p.I1707I 0.17 TCGA-BF-A1PX-01 1 6202348 6202348 G A CHD5 Missense_Mutation p.S759F 0.13 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PX-01 1 64643408 64643408 G A ROR1 Missense_Mutation p.E562K 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 1 75036989 75036989 C T C1orf173 Missense_Mutation p.G1469R 0.10 tolerated(0.05) benign(0.084) TCGA-BF-A1PX-01 1 79392765 79392765 C T ELTD1 Missense_Mutation p.V297I 0.11 tolerated(0.13) benign(0.361) TCGA-BF-A1PX-01 1 94520779 94520779 C T ABCA4 Silent p.G825G 0.12 TCGA-BF-A1PX-01 1 94668540 94668540 C T ARHGAP29 Silent p.R296R 0.08 TCGA-BF-A1PX-01 20 18143107 18143107 G A CSRP2BP Missense_Mutation p.V397M 0.23 tolerated(0.24) benign(0.003) TCGA-BF-A1PX-01 20 31022685 31022685 C T ASXL1 Silent p.L724L 0.13 TCGA-BF-A1PX-01 20 3127538 3127538 G A FASTKD5 Missense_Mutation p.R727W 0.18 deleterious(0.02) possibly_damaging(0.873) TCGA-BF-A1PX-01 20 35547838 35547838 G A SAMHD1 Missense_Mutation p.P261S 0.18 tolerated(0.86) benign(0.403) TCGA-BF-A1PX-01 20 45644851 45644851 C T EYA2 Silent p.S110S 0.10 TCGA-BF-A1PX-01 20 46295078 46295078 C T SULF2 Silent p.K577K 0.11 TCGA-BF-A1PX-01 20 47870326 47870326 G A ZNFX1 Silent p.I994I 0.08 TCGA-BF-A1PX-01 20 55028110 55028110 C T CASS4 Silent p.T626T 0.14 TCGA-BF-A1PX-01 20 60485526 60485526 C T CDH4 Missense_Mutation p.L413F 0.11 deleterious(0) probably_damaging(0.978) TCGA-BF-A1PX-01 20 62595261 62595261 G A ZNF512B Missense_Mutation p.P496S 0.15 tolerated(0.14) benign(0.014) TCGA-BF-A1PX-01 21 34975835 34975835 G A CRYZL1 Missense_Mutation p.P114S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1PX-01 21 35821668 35821668 C T KCNE1 Missense_Mutation p.E89K 0.10 tolerated(1) benign(0.002) TCGA-BF-A1PX-01 21 43857599 43857599 G A UBASH3A Silent p.G465G 0.16 TCGA-BF-A1PX-01 21 44323701 44323701 C T NDUFV3 Silent p.S193S 0.10 TCGA-BF-A1PX-01 21 46101722 46101722 G A KRTAP12-1 3'UTR 0.18 TCGA-BF-A1PX-01 22 22868501 22868501 C T ZNF280A Missense_Mutation p.G485E 0.16 deleterious(0.02) possibly_damaging(0.686) TCGA-BF-A1PX-01 22 30659972 30659972 C T OSM Missense_Mutation p.R220Q 0.11 tolerated(0.08) benign(0.328) TCGA-BF-A1PX-01 22 30689645 30689645 G A TBC1D10A Nonsense_Mutation p.Q356* 0.12 TCGA-BF-A1PX-01 22 31289498 31289498 G A OSBP2 Missense_Mutation p.R680K 0.12 tolerated(0.39) benign(0.401) TCGA-BF-A1PX-01 22 42271552 42271552 C T SREBF2 Silent p.L404L 0.14 TCGA-BF-A1PX-01 22 51178298 51178298 C T ACR Missense_Mutation p.S153L 0.13 tolerated(0.3) benign(0.022) TCGA-BF-A1PX-01 2 102626224 102626224 G A IL1R2 Missense_Mutation p.D90N 0.08 tolerated(0.26) benign(0.006) TCGA-BF-A1PX-01 2 103095596 103095596 C T SLC9A4 Silent p.A185A 0.12 TCGA-BF-A1PX-01 2 103300737 103300737 G A SLC9A2 Missense_Mutation p.R456Q 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-BF-A1PX-01 2 113742450 113742450 G A IL36G Missense_Mutation p.E112K 0.16 tolerated(0.2) benign(0.049) TCGA-BF-A1PX-01 2 113783768 113783768 C T IL36B Nonsense_Mutation p.W101* 0.09 TCGA-BF-A1PX-01 2 113789313 113789313 G A IL36B 5'UTR 0.12 TCGA-BF-A1PX-01 2 128047347 128047347 G A ERCC3 Missense_Mutation p.P192L 0.18 deleterious(0.01) benign(0.189) TCGA-BF-A1PX-01 2 131796599 131796599 C T ARHGEF4 Silent p.F247F 0.17 TCGA-BF-A1PX-01 2 136393490 136393490 G A R3HDM1 Silent p.K243K 0.11 TCGA-BF-A1PX-01 2 136566908 136566908 C T LCT Silent p.L1003L 0.10 TCGA-BF-A1PX-01 2 145147437 145147437 G C ZEB2 Missense_Mutation p.H1076D 0.09 deleterious(0) possibly_damaging(0.533) TCGA-BF-A1PX-01 2 158184025 158184025 C T ERMN 5'UTR 0.12 TCGA-BF-A1PX-01 2 160294890 160294890 G A BAZ2B Missense_Mutation p.P406L 0.11 possibly_damaging(0.713) TCGA-BF-A1PX-01 2 160294891 160294891 G A BAZ2B Missense_Mutation p.P406S 0.11 possibly_damaging(0.641) TCGA-BF-A1PX-01 2 165793875 165793875 G A SLC38A11 Missense_Mutation p.S145L 0.11 deleterious(0.01) benign(0.297) TCGA-BF-A1PX-01 2 166234156 166234156 G A SCN2A Missense_Mutation p.R1435Q 0.09 deleterious(0.04) probably_damaging(0.955) TCGA-BF-A1PX-01 2 167140996 167140996 C T SCN9A Silent p.E647E 0.19 TCGA-BF-A1PX-01 2 168101840 168101840 G A XIRP2 Missense_Mutation p.R1313K 0.09 benign(0.169) TCGA-BF-A1PX-01 2 175436889 175436889 G A WIPF1 Missense_Mutation p.P215L 0.15 tolerated(0.48) benign(0.002) TCGA-BF-A1PX-01 2 179413377 179413377 C T TTN Silent p.G30992G 0.11 TCGA-BF-A1PX-01 2 179418078 179418078 A T TTN Missense_Mutation p.I29850N 0.09 TCGA-BF-A1PX-01 2 179596793 179596793 C T TTN Missense_Mutation p.E5635K 0.09 TCGA-BF-A1PX-01 2 179597660 179597660 C T TTN Missense_Mutation p.E5415K 0.15 TCGA-BF-A1PX-01 2 179599144 179599144 G A TTN Missense_Mutation p.S5136L 0.19 TCGA-BF-A1PX-01 2 179654155 179654155 C T TTN Missense_Mutation p.E670K 0.11 TCGA-BF-A1PX-01 2 183795425 183795425 G A NCKAP1 Missense_Mutation p.S990L 0.18 tolerated(0.12) benign(0.064) TCGA-BF-A1PX-01 2 187605078 187605078 G A FAM171B Missense_Mutation p.G121E 0.09 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 2 203693608 203693608 A G ICA1L Missense_Mutation p.L42S 0.10 deleterious(0) benign(0.383) TCGA-BF-A1PX-01 2 209116179 209116179 G A IDH1 Missense_Mutation p.P33S 0.13 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BF-A1PX-01 2 209292968 209292968 C T PTH2R Missense_Mutation p.L40F 0.14 deleterious(0.02) probably_damaging(0.952) TCGA-BF-A1PX-01 2 219134700 219134700 G A AAMP Missense_Mutation p.P37L 0.13 deleterious(0.04) benign(0.152) TCGA-BF-A1PX-01 2 220498138 220498138 G A SLC4A3 Missense_Mutation p.E501K 0.09 tolerated(0.37) benign(0.441) TCGA-BF-A1PX-01 2 227967551 227967551 A G COL4A4 Missense_Mutation p.I295T 0.11 benign(0.024) TCGA-BF-A1PX-01 2 228883592 228883592 C T SPHKAP Missense_Mutation p.E660K 0.10 tolerated(0.08) benign(0.048) TCGA-BF-A1PX-01 2 228886589 228886589 G A SPHKAP Silent p.L179L 0.13 TCGA-BF-A1PX-01 2 24991212 24991212 C T NCOA1 Silent p.T1426T 0.13 TCGA-BF-A1PX-01 2 27800558 27800558 G A C2orf16 Silent p.E373E 0.15 TCGA-BF-A1PX-01 2 47287978 47287978 C T TTC7A Silent p.F741F 0.18 TCGA-BF-A1PX-01 2 55913524 55913524 G A PNPT1 Missense_Mutation p.S93F 0.21 deleterious(0) possibly_damaging(0.702) TCGA-BF-A1PX-01 2 56098169 56098169 G A EFEMP1 Missense_Mutation p.P364S 0.10 tolerated(0.13) probably_damaging(0.987) TCGA-BF-A1PX-01 2 61361297 61361297 G A KIAA1841 Missense_Mutation p.G685D 0.19 tolerated_low_confidence(0.1) unknown(0) TCGA-BF-A1PX-01 2 70188107 70188107 G A ASPRV1 Silent p.P238P 0.18 TCGA-BF-A1PX-01 2 73653612 73653612 C T ALMS1 Silent p.V423V 0.10 TCGA-BF-A1PX-01 2 95845936 95845936 C T ZNF2 Nonsense_Mutation p.Q65* 0.11 TCGA-BF-A1PX-01 2 98804438 98804438 G A VWA3B Missense_Mutation p.E438K 0.27 deleterious(0.01) benign(0.347) TCGA-BF-A1PX-01 3 108070690 108070690 C T HHLA2 Silent p.F10F 0.15 TCGA-BF-A1PX-01 3 111312476 111312476 C T ZBED2 Missense_Mutation p.M191I 0.11 tolerated(0.05) benign(0.08) TCGA-BF-A1PX-01 3 113375292 113375292 G A KIAA2018 Missense_Mutation p.P1746L 0.17 possibly_damaging(0.628) TCGA-BF-A1PX-01 3 121712760 121712760 G A ILDR1 Missense_Mutation p.P279L 0.09 tolerated(0.36) probably_damaging(0.998) TCGA-BF-A1PX-01 3 123419615 123419615 G A MYLK Silent p.L900L 0.09 TCGA-BF-A1PX-01 3 138091750 138091750 G A MRAS Missense_Mutation p.D9N 0.13 tolerated(0.18) benign(0.305) TCGA-BF-A1PX-01 3 13916511 13916511 G A WNT7A Silent p.F77F 0.09 TCGA-BF-A1PX-01 3 140397075 140397075 G A TRIM42 Missense_Mutation p.E2K 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-BF-A1PX-01 3 14176677 14176677 C T TMEM43 Missense_Mutation p.S242F 0.17 tolerated(0.17) benign(0.03) TCGA-BF-A1PX-01 3 167159941 167159941 G A SERPINI2 Missense_Mutation p.P392S 0.21 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 3 170786639 170786639 G A TNIK Missense_Mutation p.H1233Y 0.13 deleterious(0) probably_damaging(0.989) TCGA-BF-A1PX-01 3 186006576 186006576 G A DGKG Missense_Mutation p.S156F 0.09 deleterious(0.01) benign(0.27) TCGA-BF-A1PX-01 3 191861754 191861754 G A FGF12 3'UTR 0.18 TCGA-BF-A1PX-01 3 193120522 193120522 G A ATP13A4 Silent p.T1170T 0.11 TCGA-BF-A1PX-01 3 193176911 193176911 C T ATP13A4 Missense_Mutation p.G545R 0.10 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 3 36527639 36527639 G A STAC Silent p.K195K 0.12 TCGA-BF-A1PX-01 3 38359796 38359796 C T SLC22A14 3'UTR 0.11 TCGA-BF-A1PX-01 3 38770223 38770223 C T SCN10A Missense_Mutation p.R817Q 0.15 tolerated(0.15) benign(0.059) TCGA-BF-A1PX-01 3 38924850 38924850 G C SCN11A Missense_Mutation p.S1031R 0.09 tolerated(0.53) benign(0.007) TCGA-BF-A1PX-01 3 38936347 38936347 G A SCN11A Nonsense_Mutation p.R838* 0.14 TCGA-BF-A1PX-01 3 38949515 38949515 C T SCN11A Silent p.R466R 0.13 TCGA-BF-A1PX-01 3 42956557 42956557 C T ZNF662 Missense_Mutation p.P357L 0.11 tolerated(0.07) benign(0.116) TCGA-BF-A1PX-01 3 45135052 45135052 C T CDCP1 Nonsense_Mutation p.W448* 0.11 TCGA-BF-A1PX-01 3 48688421 48688421 G A CELSR3 Missense_Mutation p.H2092Y 0.11 deleterious(0.01) benign(0.384) TCGA-BF-A1PX-01 3 49940718 49940718 G A MST1R Missense_Mutation p.P109S 0.12 tolerated(0.29) benign(0.038) TCGA-BF-A1PX-01 3 54925472 54925472 C T CACNA2D3 Silent p.T747T 0.26 TCGA-BF-A1PX-01 3 93734117 93734117 C T STX19 5'UTR 0.12 TCGA-BF-A1PX-01 3 97851872 97851872 G A OR5H1 Missense_Mutation p.E111K 0.09 deleterious(0.02) benign(0.167) TCGA-BF-A1PX-01 3 98002486 98002486 C T OR5H2 Missense_Mutation p.S252F 0.16 deleterious(0) benign(0.429) TCGA-BF-A1PX-01 4 122766756 122766756 G A BBS7 Missense_Mutation p.S378F 0.09 tolerated(0.7) benign(0.011) TCGA-BF-A1PX-01 4 125590863 125590863 G A ANKRD50 Missense_Mutation p.S1190L 0.19 tolerated(0.08) benign(0.007) TCGA-BF-A1PX-01 4 138452705 138452705 C T PCDH18 Missense_Mutation p.D180N 0.12 tolerated(0.74) benign(0.009) TCGA-BF-A1PX-01 4 15009173 15009173 G A CPEB2 Missense_Mutation p.R636K 0.12 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-BF-A1PX-01 4 187159439 187159439 G A KLKB1 Missense_Mutation p.G173E 0.11 tolerated(0.36) benign(0.167) TCGA-BF-A1PX-01 4 46312230 46312230 G A GABRA2 Silent p.F173F 0.10 TCGA-BF-A1PX-01 4 47525090 47525090 C T ATP10D Missense_Mutation p.L183F 0.13 deleterious(0.02) probably_damaging(0.914) TCGA-BF-A1PX-01 4 47647134 47647134 G A CORIN Missense_Mutation p.P641S 0.12 tolerated(0.19) benign(0.208) TCGA-BF-A1PX-01 4 52945947 52945947 C T SPATA18 Missense_Mutation p.S406L 0.11 deleterious(0) probably_damaging(0.943) TCGA-BF-A1PX-01 4 69964304 69964304 G A UGT2B7 Nonsense_Mutation p.W256* 0.08 TCGA-BF-A1PX-01 4 70155457 70155457 G A UGT2B28 Silent p.Q359Q 0.25 TCGA-BF-A1PX-01 4 87684145 87684145 C T PTPN13 Silent p.T1273T 0.09 TCGA-BF-A1PX-01 4 89415451 89415451 G A HERC5 Missense_Mutation p.D805N 0.12 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.14 tolerated(0.54) benign(0.001) TCGA-BF-A1PX-01 5 102432371 102432371 G A GIN1 Missense_Mutation p.P390S 0.12 deleterious(0) probably_damaging(0.987) TCGA-BF-A1PX-01 5 10461368 10461368 C T ROPN1L Missense_Mutation p.P164S 0.13 tolerated(0.09) benign(0.249) TCGA-BF-A1PX-01 5 1060544 1060544 A T SLC12A7 Missense_Mutation p.F921Y 0.11 tolerated(1) benign(0.002) TCGA-BF-A1PX-01 5 125906538 125906538 C A ALDH7A1 Missense_Mutation p.V237F 0.11 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 5 137501622 137501622 C T BRD8 Silent p.K391K 0.10 TCGA-BF-A1PX-01 5 139060581 139060581 G A CXXC5 Missense_Mutation p.G158E 0.11 tolerated(0.14) possibly_damaging(0.895) TCGA-BF-A1PX-01 5 147889130 147889130 G A HTR4 Missense_Mutation p.A322V 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-BF-A1PX-01 5 156459882 156459882 C T HAVCR1 Silent p.K323K 0.16 TCGA-BF-A1PX-01 5 169640 169640 A C PLEKHG4B Missense_Mutation p.H865P 0.07 deleterious(0.01) probably_damaging(0.953) TCGA-BF-A1PX-01 5 171433 171433 G A PLEKHG4B Silent p.K952K 0.16 TCGA-BF-A1PX-01 5 171434 171434 G A PLEKHG4B Missense_Mutation p.E953K 0.16 deleterious(0.05) probably_damaging(0.997) TCGA-BF-A1PX-01 5 176395770 176395770 G A UIMC1 Missense_Mutation p.P329L 0.17 deleterious(0.01) benign(0.238) TCGA-BF-A1PX-01 5 176886132 176886132 G A DBN1 Missense_Mutation p.P367S 0.12 tolerated(0.1) benign(0.208) TCGA-BF-A1PX-01 5 23518034 23518034 C T PRDM9 Nonsense_Mutation p.Q116* 0.13 TCGA-BF-A1PX-01 5 23524491 23524491 C T PRDM9 Silent p.F333F 0.12 TCGA-BF-A1PX-01 5 33751639 33751639 T C ADAMTS12 Silent p.Q168Q 0.08 TCGA-BF-A1PX-01 5 36049295 36049295 G A UGT3A2 Missense_Mutation p.P180L 0.20 deleterious(0.04) probably_damaging(0.991) TCGA-BF-A1PX-01 5 71618054 71618054 G A PTCD2 Silent p.K61K 0.12 TCGA-BF-A1PX-01 5 850760 850760 G A ZDHHC11 5'UTR 0.23 TCGA-BF-A1PX-01 5 850761 850761 G A ZDHHC11 5'UTR 0.23 TCGA-BF-A1PX-01 5 89949582 89949582 C T GPR98 Silent p.S1397S 0.17 TCGA-BF-A1PX-01 6 109763198 109763198 C T SMPD2 Silent p.L82L 0.15 TCGA-BF-A1PX-01 6 109773593 109773593 G A MICAL1 Nonsense_Mutation p.R230* 0.08 TCGA-BF-A1PX-01 6 12121818 12121818 A G HIVEP1 Missense_Mutation p.Q597R 0.11 deleterious(0.03) benign(0.356) TCGA-BF-A1PX-01 6 12296257 12296257 C T EDN1 Missense_Mutation p.P199L 0.08 tolerated(1) benign(0.001) TCGA-BF-A1PX-01 6 128561213 128561213 C T PTPRK Silent p.G220G 0.10 TCGA-BF-A1PX-01 6 132859650 132859650 G A TAAR9 Silent p.L74L 0.09 TCGA-BF-A1PX-01 6 155774583 155774583 G A NOX3 Missense_Mutation p.L99F 0.09 deleterious(0) probably_damaging(0.961) TCGA-BF-A1PX-01 6 155774584 155774584 G A NOX3 Silent p.N98N 0.09 TCGA-BF-A1PX-01 6 159457774 159457774 G A TAGAP Silent p.F427F 0.16 TCGA-BF-A1PX-01 6 161160173 161160173 G A PLG Missense_Mutation p.E651K 0.12 tolerated(0.78) benign(0.007) TCGA-BF-A1PX-01 6 165792793 165792793 G A PDE10A Silent p.I625I 0.10 TCGA-BF-A1PX-01 6 166862232 166862232 C T RPS6KA2 Missense_Mutation p.D446N 0.33 tolerated(0.89) benign(0) TCGA-BF-A1PX-01 6 28227579 28227579 C T NKAPL Missense_Mutation p.P144S 0.11 deleterious(0) unknown(0) TCGA-BF-A1PX-01 6 28294165 28294165 G A ZSCAN31 Silent p.L333L 0.09 TCGA-BF-A1PX-01 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.10 TCGA-BF-A1PX-01 6 29323829 29323829 C T OR5V1 Silent p.T48T 0.09 TCGA-BF-A1PX-01 6 30880155 30880155 C T GTF2H4 Missense_Mutation p.R337W 0.11 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 6 31742303 31742303 C T VWA7 Silent p.P237P 0.09 TCGA-BF-A1PX-01 6 32974902 32974902 C T HLA-DOA Missense_Mutation p.G235D 0.10 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 6 35046409 35046409 C T ANKS1A Silent p.L753L 0.11 TCGA-BF-A1PX-01 6 36168987 36168987 C T BRPF3 Silent p.I296I 0.12 TCGA-BF-A1PX-01 6 41704688 41704688 C T PGC Missense_Mutation p.G357S 0.12 deleterious(0.03) benign(0.162) TCGA-BF-A1PX-01 6 43220587 43220587 C T TTBK1 Silent p.V73V 0.14 TCGA-BF-A1PX-01 6 52957291 52957291 C T FBXO9 Missense_Mutation p.P250S 0.08 tolerated(0.05) benign(0.158) TCGA-BF-A1PX-01 6 55039521 55039521 G A HCRTR2 Missense_Mutation p.E46K 0.15 deleterious(0.04) benign(0.218) TCGA-BF-A1PX-01 6 56482993 56482993 C T DST Intron 0.09 TCGA-BF-A1PX-01 6 69703712 69703712 C T BAI3 Missense_Mutation p.S596F 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1PX-01 6 7248820 7248820 C T RREB1 Silent p.I1616I 0.14 TCGA-BF-A1PX-01 6 80223044 80223044 G A LCA5 Missense_Mutation p.S202F 0.15 deleterious(0.02) benign(0.033) TCGA-BF-A1PX-01 6 84117513 84117513 G A ME1 Silent p.F62F 0.10 TCGA-BF-A1PX-01 6 84333049 84333049 C T SNAP91 Missense_Mutation p.D260N 0.11 deleterious(0) unknown(0) TCGA-BF-A1PX-01 6 84627781 84627781 C T CYB5R4 Missense_Mutation p.P168L 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-BF-A1PX-01 6 87969747 87969747 C T ZNF292 Missense_Mutation p.H2134Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 6 88768451 88768451 G A SPACA1 Missense_Mutation p.E129K 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A1PX-01 7 100320727 100320727 G A EPO Missense_Mutation p.G185R 0.08 tolerated(0.19) possibly_damaging(0.707) TCGA-BF-A1PX-01 7 100677629 100677629 C T MUC17 Missense_Mutation p.P978S 0.11 probably_damaging(0.993) TCGA-BF-A1PX-01 7 100679055 100679055 G A MUC17 Missense_Mutation p.G1453E 0.12 unknown(0) TCGA-BF-A1PX-01 7 100844110 100844110 G A MOGAT3 Missense_Mutation p.P9L 0.27 tolerated(0.5) benign(0.014) TCGA-BF-A1PX-01 7 122338646 122338646 A G RNF133 Silent p.G109G 0.08 TCGA-BF-A1PX-01 7 126086239 126086239 C T GRM8 Missense_Mutation p.G873E 0.14 tolerated(0.24) benign(0.444) TCGA-BF-A1PX-01 7 126410017 126410017 T C GRM8 Missense_Mutation p.H420R 0.11 tolerated(0.19) possibly_damaging(0.767) TCGA-BF-A1PX-01 7 139636089 139636089 C T TBXAS1 Missense_Mutation p.P146S 0.12 tolerated(0.32) benign(0.292) TCGA-BF-A1PX-01 7 140453135 140453135 C T BRAF Silent p.V600V 0.09 TCGA-BF-A1PX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.09 deleterious(0) probably_damaging(0.967) TCGA-BF-A1PX-01 7 141673246 141673246 G A TAS2R38 Nonsense_Mutation p.Q82* 0.12 TCGA-BF-A1PX-01 7 141752605 141752605 C T MGAM Missense_Mutation p.P994S 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-BF-A1PX-01 7 142149026 142149026 C T TRBV5-5 Missense_Mutation p.R82Q 0.10 deleterious(0.01) benign(0.222) TCGA-BF-A1PX-01 7 143807353 143807353 G A OR2A2 Silent p.K226K 0.11 TCGA-BF-A1PX-01 7 143826686 143826686 C T OR2A14 Missense_Mutation p.L161F 0.10 deleterious(0.04) benign(0.273) TCGA-BF-A1PX-01 7 146471374 146471374 G A CNTNAP2 Missense_Mutation p.E37K 0.26 tolerated(0.15) benign(0.001) TCGA-BF-A1PX-01 7 14661117 14661117 T A DGKB Missense_Mutation p.E391D 0.33 tolerated(0.97) benign(0.003) TCGA-BF-A1PX-01 7 150648860 150648860 G A KCNH2 Missense_Mutation p.R541C 0.14 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 7 22306590 22306590 C T RAPGEF5 Silent p.R110R 0.16 TCGA-BF-A1PX-01 7 22533211 22533211 G A STEAP1B Missense_Mutation p.P110L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1PX-01 7 44798971 44798971 C T ZMIZ2 Missense_Mutation p.S302F 0.16 deleterious(0) possibly_damaging(0.759) TCGA-BF-A1PX-01 7 51095552 51095552 C T COBL Missense_Mutation p.D1081N 0.10 deleterious(0.03) benign(0.011) TCGA-BF-A1PX-01 7 6370297 6370297 T A FAM220A Missense_Mutation p.E163D 0.11 tolerated(0.08) benign(0.032) TCGA-BF-A1PX-01 7 87537493 87537493 A G DBF4 3'UTR 0.12 TCGA-BF-A1PX-01 7 88956692 88956692 G A ZNF804B Missense_Mutation p.R95Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PX-01 8 10755821 10755821 G A XKR6 Missense_Mutation p.P523S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1PX-01 8 120118244 120118244 G A COLEC10 Silent p.R216R 0.15 TCGA-BF-A1PX-01 8 125082714 125082714 G A FER1L6 Missense_Mutation p.D1281N 0.08 tolerated(1) benign(0.005) TCGA-BF-A1PX-01 8 133740055 133740055 G A TMEM71 Missense_Mutation p.S203L 0.08 tolerated(1) benign(0.002) TCGA-BF-A1PX-01 8 142185557 142185557 A G DENND3 Missense_Mutation p.E765G 0.11 deleterious(0) possibly_damaging(0.839) TCGA-BF-A1PX-01 8 145722800 145722800 C T PPP1R16A Missense_Mutation p.L75F 0.21 deleterious(0.01) benign(0.314) TCGA-BF-A1PX-01 8 25708162 25708162 G A EBF2 Silent p.P548P 0.10 TCGA-BF-A1PX-01 8 26628003 26628003 G A ADRA1A Missense_Mutation p.A355V 0.13 tolerated(0.35) benign(0.003) TCGA-BF-A1PX-01 8 38107265 38107265 C T DDHD2 Missense_Mutation p.P430S 0.14 deleterious(0) probably_damaging(0.991) TCGA-BF-A1PX-01 8 53092745 53092745 C T ST18 Missense_Mutation p.E72K 0.10 deleterious(0.01) benign(0.371) TCGA-BF-A1PX-01 8 55540655 55540655 G A RP1 Missense_Mutation p.E1405K 0.18 tolerated(0.9) benign(0.003) TCGA-BF-A1PX-01 8 57354177 57354177 G A PENK Missense_Mutation p.S153F 0.19 tolerated(0.05) benign(0.036) TCGA-BF-A1PX-01 8 57354293 57354293 C T PENK Missense_Mutation p.M114I 0.10 tolerated(0.23) benign(0.094) TCGA-BF-A1PX-01 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.11 tolerated(0.51) benign(0.108) TCGA-BF-A1PX-01 8 67066444 67066444 G A TRIM55 Missense_Mutation p.G467R 0.15 tolerated_low_confidence(0.09) benign(0.037) TCGA-BF-A1PX-01 8 67066485 67066485 G A TRIM55 Silent p.R480R 0.13 TCGA-BF-A1PX-01 8 6912948 6912948 G A DEFA5 3'UTR 0.27 TCGA-BF-A1PX-01 8 70536203 70536203 C T SULF1 Missense_Mutation p.R541W 0.10 deleterious(0) probably_damaging(0.995) TCGA-BF-A1PX-01 8 75928806 75928806 C T CRISPLD1 Missense_Mutation p.S245L 0.16 tolerated(0.16) benign(0.058) TCGA-BF-A1PX-01 8 80677781 80677781 T C HEY1 Missense_Mutation p.H190R 0.17 tolerated(0.06) benign(0.043) TCGA-BF-A1PX-01 8 87666270 87666270 C T CNGB3 Silent p.R291R 0.10 TCGA-BF-A1PX-01 9 121929766 121929766 G A BRINP1 Silent p.L628L 0.12 TCGA-BF-A1PX-01 9 125377721 125377721 G A OR1Q1 Nonsense_Mutation p.W235* 0.16 TCGA-BF-A1PX-01 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.10 deleterious(0) probably_damaging(1) TCGA-BF-A1PX-01 9 129870958 129870958 C T ANGPTL2 Missense_Mutation p.G18E 0.17 tolerated_low_confidence(0.28) probably_damaging(0.931) TCGA-BF-A1PX-01 9 140508858 140508858 C T ARRDC1 Silent p.I242I 0.12 TCGA-BF-A1PX-01 9 140508859 140508859 C T ARRDC1 Silent p.L243L 0.13 TCGA-BF-A1PX-01 9 14720112 14720112 G A CER1 Silent p.S260S 0.15 TCGA-BF-A1PX-01 9 14720113 14720113 G A CER1 Missense_Mutation p.S260F 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.564) TCGA-BF-A1PX-01 9 19063578 19063578 G A HAUS6 Silent p.S459S 0.09 TCGA-BF-A1PX-01 9 35382413 35382413 C T UNC13B Missense_Mutation p.T823I 0.16 deleterious(0) probably_damaging(0.976) TCGA-BF-A1PX-01 9 35403774 35403774 C T UNC13B Missense_Mutation p.S1507F 0.15 tolerated(0.25) benign(0.248) TCGA-BF-A1PX-01 9 35559262 35559262 C T RUSC2 Silent p.N1127N 0.09 TCGA-BF-A1PX-01 X 101572388 101572388 G A NXF2 Missense_Mutation p.E96K 0.11 tolerated(0.65) benign(0.002) TCGA-BF-A1PX-01 X 104961396 104961396 G A IL1RAPL2 Missense_Mutation p.G270E 0.20 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PX-01 X 114540930 114540930 G A LUZP4 Missense_Mutation p.R168K 0.26 tolerated(0.09) possibly_damaging(0.801) TCGA-BF-A1PX-01 X 119438286 119438286 G A TMEM255A Missense_Mutation p.S40F 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 X 12736900 12736900 G A FRMPD4 Missense_Mutation p.E1319K 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-A1PX-01 X 12906163 12906163 T C TLR7 Missense_Mutation p.S846P 0.18 deleterious(0.01) possibly_damaging(0.62) TCGA-BF-A1PX-01 X 65409626 65409626 C T HEPH Silent p.V357V 0.30 TCGA-BF-A1PX-01 X 79999689 79999689 G A BRWD3 Missense_Mutation p.R219C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PX-01 X 99956480 99956480 C T SYTL4 Nonsense_Mutation p.W100* 0.28 TCGA-BF-A1PX-01 Y 16953030 16953030 C T NLGN4Y Missense_Mutation p.T780I 0.26 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-BF-A1PZ-01 10 115963932 115963932 G A TDRD1 Missense_Mutation p.R361K 0.47 tolerated(0.8) possibly_damaging(0.87) TCGA-BF-A1PZ-01 10 1279705 1279705 G A ADARB2 Missense_Mutation p.H482Y 0.45 deleterious(0) possibly_damaging(0.584) TCGA-BF-A1PZ-01 10 22678237 22678237 C T SPAG6 Missense_Mutation p.S334F 0.42 deleterious(0.02) possibly_damaging(0.521) TCGA-BF-A1PZ-01 10 30306787 30306787 G A KIAA1462 3'UTR 0.42 TCGA-BF-A1PZ-01 10 33515208 33515208 C T NRP1 Missense_Mutation p.G331S 0.28 tolerated(0.18) possibly_damaging(0.771) TCGA-BF-A1PZ-01 10 33515209 33515209 C T NRP1 Silent p.L330L 0.27 TCGA-BF-A1PZ-01 10 37422873 37422873 G A ANKRD30A Missense_Mutation p.G160E 0.40 deleterious(0.03) benign(0.298) TCGA-BF-A1PZ-01 10 38344791 38344791 C T ZNF33A Missense_Mutation p.P580L 0.39 deleterious(0.02) probably_damaging(1) TCGA-BF-A1PZ-01 10 52619645 52619645 G A A1CF 5'UTR 0.42 TCGA-BF-A1PZ-01 10 55568979 55568979 C T PCDH15 Missense_Mutation p.E545K 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-BF-A1PZ-01 10 69669084 69669084 T C SIRT1 Silent p.F414F 0.41 TCGA-BF-A1PZ-01 10 77795790 77795790 C T C10orf11 Silent p.F24F 0.42 TCGA-BF-A1PZ-01 10 82331187 82331187 G A SH2D4B Nonsense_Mutation p.W116* 0.33 TCGA-BF-A1PZ-01 10 88439896 88439896 G A LDB3 Silent p.P101P 0.39 TCGA-BF-A1PZ-01 10 931637 931637 C T LARP4B Missense_Mutation p.V9I 0.39 deleterious_low_confidence(0.04) probably_damaging(0.935) TCGA-BF-A1PZ-01 10 931638 931638 C T LARP4B Silent p.K8K 0.41 TCGA-BF-A1PZ-01 10 99161087 99161087 C T RRP12 5'UTR 0.50 TCGA-BF-A1PZ-01 10 99197027 99197027 G A EXOSC1 Silent p.S134S 0.44 TCGA-BF-A1PZ-01 11 12265580 12265580 C T MICAL2 Missense_Mutation p.P902L 0.85 tolerated_low_confidence(0.1) benign(0.001) TCGA-BF-A1PZ-01 11 124766432 124766432 C T ROBO4 Missense_Mutation p.A179T 0.86 tolerated(1) benign(0.006) TCGA-BF-A1PZ-01 11 134050977 134050977 G A NCAPD3 Silent p.L852L 0.91 TCGA-BF-A1PZ-01 11 18956224 18956224 G A MRGPRX1 Silent p.I36I 0.49 TCGA-BF-A1PZ-01 11 34184209 34184209 C T ABTB2 Missense_Mutation p.R711Q 0.34 deleterious(0) benign(0.085) TCGA-BF-A1PZ-01 11 34938197 34938197 G A PDHX 5'UTR 0.21 TCGA-BF-A1PZ-01 11 36595128 36595128 C T RAG1 Missense_Mutation p.H92Y 0.90 tolerated_low_confidence(0.09) benign(0.004) TCGA-BF-A1PZ-01 11 376248 376248 C T B4GALNT4 Intron 0.92 TCGA-BF-A1PZ-01 11 45246334 45246334 C T PRDM11 Missense_Mutation p.P437S 0.87 deleterious_low_confidence(0.04) benign(0.076) TCGA-BF-A1PZ-01 11 46748278 46748278 C T F2 Silent p.L341L 0.86 TCGA-BF-A1PZ-01 11 5068212 5068212 C T OR52J3 Missense_Mutation p.R153C 0.88 deleterious(0) benign(0.015) TCGA-BF-A1PZ-01 11 5264435 5264435 G A HBG1 3'Flank 0.92 TCGA-BF-A1PZ-01 11 56431231 56431231 G A OR5AR1 Missense_Mutation p.E24K 0.84 tolerated(0.33) benign(0.002) TCGA-BF-A1PZ-01 11 58477615 58477615 G A GLYAT Missense_Mutation p.S172F 0.89 tolerated(0.29) probably_damaging(0.964) TCGA-BF-A1PZ-01 11 58978743 58978743 A G MPEG1 Silent p.F532F 0.81 TCGA-BF-A1PZ-01 11 5905551 5905551 A C OR52E4 Missense_Mutation p.Y10S 0.91 deleterious(0.02) benign(0.027) TCGA-BF-A1PZ-01 11 68197081 68197081 C T LRP5 Missense_Mutation p.H1226Y 0.82 deleterious(0.03) probably_damaging(0.997) TCGA-BF-A1PZ-01 11 7960755 7960755 G A OR10A3 Missense_Mutation p.L105F 0.86 tolerated(0.38) benign(0.076) TCGA-BF-A1PZ-01 11 92523303 92523303 G A FAT3 Silent p.R1510R 0.84 TCGA-BF-A1PZ-01 11 9597474 9597474 G T WEE1 Missense_Mutation p.V206F 0.82 tolerated(0.1) benign(0.312) TCGA-BF-A1PZ-01 12 100166721 100166721 C T ANKS1B Silent p.G369G 0.35 TCGA-BF-A1PZ-01 12 104123987 104123987 C T STAB2 Missense_Mutation p.P1726S 0.38 deleterious(0.03) probably_damaging(1) TCGA-BF-A1PZ-01 12 10560165 10560165 G A KLRC4 3'UTR 0.35 TCGA-BF-A1PZ-01 12 108589838 108589838 C T WSCD2 Missense_Mutation p.R77W 0.53 deleterious(0.01) benign(0.38) TCGA-BF-A1PZ-01 12 109306351 109306351 C T SVOP Missense_Mutation p.G471D 0.38 tolerated_low_confidence(0.18) benign(0.033) TCGA-BF-A1PZ-01 12 109962272 109962272 C T UBE3B Silent p.G844G 0.39 TCGA-BF-A1PZ-01 12 113321127 113321127 G A RPH3A Silent p.R452R 0.29 TCGA-BF-A1PZ-01 12 123475198 123475198 C A PITPNM2 Silent p.P821P 0.08 TCGA-BF-A1PZ-01 12 132404629 132404629 G A ULK1 Missense_Mutation p.R970H 0.11 tolerated(0.12) possibly_damaging(0.824) TCGA-BF-A1PZ-01 12 14765994 14765994 C T GUCY2C 3'UTR 0.38 TCGA-BF-A1PZ-01 12 21918970 21918970 C T KCNJ8 Missense_Mutation p.G321D 0.49 deleterious(0) probably_damaging(1) TCGA-BF-A1PZ-01 12 49361771 49361771 G A WNT10B Silent p.I223I 0.37 TCGA-BF-A1PZ-01 12 50500638 50500638 C T GPD1 Missense_Mutation p.P184S 0.42 tolerated(0.11) benign(0.002) TCGA-BF-A1PZ-01 12 50500639 50500639 C T GPD1 Missense_Mutation p.P184L 0.42 deleterious(0.01) benign(0.015) TCGA-BF-A1PZ-01 12 52967586 52967586 G A KRT74 5'UTR 0.35 TCGA-BF-A1PZ-01 12 52994945 52994945 G A KRT72 Missense_Mutation p.P98S 0.35 deleterious(0.03) possibly_damaging(0.735) TCGA-BF-A1PZ-01 12 55795165 55795165 C T OR6C65 Missense_Mutation p.P285S 0.51 deleterious_low_confidence(0) benign(0.259) TCGA-BF-A1PZ-01 12 55820290 55820290 G A OR6C76 Missense_Mutation p.G85R 0.48 tolerated_low_confidence(0.19) possibly_damaging(0.656) TCGA-BF-A1PZ-01 12 57005698 57005698 A - BAZ2A Frame_Shift_Del p.S492Pfs*7 0.56 TCGA-BF-A1PZ-01 12 57005700 57005700 G A BAZ2A Missense_Mutation p.T491I 0.56 tolerated(0.06) benign(0.001) TCGA-BF-A1PZ-01 12 57422623 57422623 G A MYO1A Silent p.V1016V 0.43 TCGA-BF-A1PZ-01 12 64821849 64821849 C T XPOT Silent p.F562F 0.38 TCGA-BF-A1PZ-01 12 75875797 75875797 G A GLIPR1 Missense_Mutation p.E120K 0.23 deleterious(0) probably_damaging(1) TCGA-BF-A1PZ-01 12 77222236 77222236 G A ZDHHC17 Nonsense_Mutation p.W369* 0.42 TCGA-BF-A1PZ-01 12 89917923 89917923 G A GALNT4 Missense_Mutation p.P135L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1PZ-01 12 89917924 89917924 G A GALNT4 Missense_Mutation p.P135S 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1PZ-01 12 93100806 93100806 C T C12orf74 Silent p.L133L 0.39 TCGA-BF-A1PZ-01 13 114288278 114288278 C T TFDP1 Missense_Mutation p.S183F 0.11 deleterious(0) possibly_damaging(0.905) TCGA-BF-A1PZ-01 13 25338397 25338397 G A RNF17 Missense_Mutation p.G19E 0.84 tolerated_low_confidence(0.71) possibly_damaging(0.886) TCGA-BF-A1PZ-01 13 28608112 28608112 T C FLT3 Silent p.S618S 0.74 TCGA-BF-A1PZ-01 13 50489151 50489151 G A SPRYD7 3'UTR 0.68 TCGA-BF-A1PZ-01 13 51825617 51825617 T A FAM124A Silent p.V74V 0.10 TCGA-BF-A1PZ-01 13 53418908 53418908 C T PCDH8 Silent p.R1000R 0.13 TCGA-BF-A1PZ-01 13 88329698 88329698 C T SLITRK5 Silent p.F685F 0.82 TCGA-BF-A1PZ-01 14 101448313 101448313 G A SNORD114-21 RNA 0.45 TCGA-BF-A1PZ-01 14 106877770 106877770 C T IGHV4-39 Nonsense_Mutation p.W75* 0.25 TCGA-BF-A1PZ-01 14 20502103 20502103 G A OR4K13 Missense_Mutation p.S272F 0.53 deleterious(0) possibly_damaging(0.908) TCGA-BF-A1PZ-01 14 21543272 21543272 C T ARHGEF40 Silent p.A461A 0.37 TCGA-BF-A1PZ-01 14 21623315 21623315 G A OR5AU1 Silent p.S290S 0.38 TCGA-BF-A1PZ-01 14 22309722 22309722 C T TRAV12-1 Missense_Mutation p.P35S 0.44 tolerated(0.26) benign(0.07) TCGA-BF-A1PZ-01 14 22458938 22458938 C T TRAV16 Silent p.L30L 0.77 TCGA-BF-A1PZ-01 14 24525553 24525553 C T LRRC16B Silent p.S272S 0.30 TCGA-BF-A1PZ-01 14 65008605 65008605 C T HSPA2 Silent p.I346I 0.46 TCGA-BF-A1PZ-01 14 75016658 75016658 G A LTBP2 Missense_Mutation p.P566L 0.33 deleterious(0) probably_damaging(0.969) TCGA-BF-A1PZ-01 14 89068387 89068387 G A ZC3H14 Missense_Mutation p.D492N 0.13 tolerated(0.11) possibly_damaging(0.828) TCGA-BF-A1PZ-01 14 89073680 89073680 C A ZC3H14 Missense_Mutation p.A614D 0.08 deleterious(0.02) possibly_damaging(0.857) TCGA-BF-A1PZ-01 14 90770317 90770317 G A NRDE2 Missense_Mutation p.R323W 0.54 tolerated(0.12) benign(0.022) TCGA-BF-A1PZ-01 15 101565040 101565040 C T LRRK1 Silent p.I700I 0.37 TCGA-BF-A1PZ-01 15 38234498 38234498 C T TMCO5A Intron 0.44 TCGA-BF-A1PZ-01 15 38793488 38793488 C T RASGRP1 Silent p.R513R 0.39 TCGA-BF-A1PZ-01 15 40660891 40660891 G A DISP2 Missense_Mutation p.G860S 0.50 tolerated(0.91) benign(0.436) TCGA-BF-A1PZ-01 15 40660892 40660892 G A DISP2 Missense_Mutation p.G860D 0.50 tolerated(0.24) probably_damaging(0.915) TCGA-BF-A1PZ-01 15 43571423 43571423 C T TGM7 Silent p.T577T 0.42 TCGA-BF-A1PZ-01 15 44202087 44202087 G A FRMD5 Silent p.I140I 0.48 TCGA-BF-A1PZ-01 15 69340211 69340211 C T NOX5 Missense_Mutation p.S620F 0.38 deleterious(0.02) possibly_damaging(0.836) TCGA-BF-A1PZ-01 15 74536355 74536355 C T CCDC33 Silent p.I17I 0.35 TCGA-BF-A1PZ-01 15 75310824 75310824 C T SCAMP5 Missense_Mutation p.P154L 0.37 tolerated(0.24) possibly_damaging(0.674) TCGA-BF-A1PZ-01 15 78317818 78317818 G A TBC1D2B Missense_Mutation p.P290L 0.52 deleterious(0.01) benign(0.075) TCGA-BF-A1PZ-01 15 85326620 85326620 C T ZNF592 Silent p.F238F 0.40 TCGA-BF-A1PZ-01 15 88472306 88472306 G A NTRK3 Intron 0.54 TCGA-BF-A1PZ-01 15 91463123 91463123 A G MAN2A2 3'UTR 0.29 TCGA-BF-A1PZ-01 15 99454591 99454591 C T IGF1R Missense_Mutation p.R504C 0.44 deleterious(0.01) possibly_damaging(0.696) TCGA-BF-A1PZ-01 16 17202607 17202607 C T XYLT1 Missense_Mutation p.S942N 0.31 deleterious(0) probably_damaging(0.98) TCGA-BF-A1PZ-01 16 21995727 21995727 G A PDZD9 Missense_Mutation p.P159L 0.37 tolerated(0.06) possibly_damaging(0.727) TCGA-BF-A1PZ-01 16 21995728 21995728 G A PDZD9 Missense_Mutation p.P159S 0.37 tolerated(0.14) probably_damaging(0.997) TCGA-BF-A1PZ-01 16 2329039 2329039 C T ABCA3 Silent p.R1484R 0.37 TCGA-BF-A1PZ-01 16 30034974 30034974 A C C16orf92 Silent p.P19P 0.25 TCGA-BF-A1PZ-01 16 3614107 3614107 C T NLRC3 Silent p.G324G 0.42 TCGA-BF-A1PZ-01 16 4414791 4414791 G A CORO7 Silent p.Y343Y 0.36 TCGA-BF-A1PZ-01 16 70176252 70176252 T C PDPR Silent p.H477H 0.22 TCGA-BF-A1PZ-01 16 720261 720261 C T RHOT2 Silent p.I114I 0.52 TCGA-BF-A1PZ-01 16 72142698 72142698 G A DHX38 Splice_Site p.X1086_splice 0.35 TCGA-BF-A1PZ-01 16 81077159 81077159 C T ATMIN Silent p.I352I 0.42 TCGA-BF-A1PZ-01 16 81942029 81942029 C T PLCG2 Silent p.P522P 0.41 TCGA-BF-A1PZ-01 17 11845635 11845635 G A DNAH9 Missense_Mutation p.E4226K 0.13 benign(0.142) TCGA-BF-A1PZ-01 17 18023310 18023310 A G MYO15A Missense_Mutation p.Y399C 0.27 benign(0.007) TCGA-BF-A1PZ-01 17 29632632 29632632 G A EVI2B 5'UTR 0.37 TCGA-BF-A1PZ-01 17 29664384 29664384 A G NF1 Splice_Site p.X2143_splice 0.58 TCGA-BF-A1PZ-01 17 34190533 34190533 C T C17orf66 Missense_Mutation p.E200K 0.21 deleterious(0.05) probably_damaging(0.959) TCGA-BF-A1PZ-01 17 37818531 37818531 C T STARD3 Silent p.I389I 0.52 TCGA-BF-A1PZ-01 17 41143452 41143452 C T RUNDC1 Missense_Mutation p.H521Y 0.40 tolerated(0.07) probably_damaging(0.991) TCGA-BF-A1PZ-01 17 42942341 42942341 G A EFTUD2 Silent p.P414P 0.31 TCGA-BF-A1PZ-01 17 4453361 4453362 - GAT MYBBP1A In_Frame_Ins p.S437dup 0.38 TCGA-BF-A1PZ-01 17 5058771 5058771 G A USP6 Missense_Mutation p.G900R 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A1PZ-01 17 59557523 59557523 G A TBX4 Silent p.P288P 0.60 TCGA-BF-A1PZ-01 17 6358902 6358903 GG TTT PITPNM3 Frame_Shift_Ins p.P894Kfs*183 0.08 TCGA-BF-A1PZ-01 17 66352868 66352868 T G ARSG Missense_Mutation p.I209M 0.31 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PZ-01 17 7681746 7681746 G A DNAH2 Missense_Mutation p.D1834N 0.74 probably_damaging(1) TCGA-BF-A1PZ-01 17 7750590 7750590 C T KDM6B Silent p.D359D 0.19 TCGA-BF-A1PZ-01 17 7750591 7750591 C T KDM6B Missense_Mutation p.L360F 0.20 unknown(0) TCGA-BF-A1PZ-01 17 9615335 9615335 C T USP43 Missense_Mutation p.H741Y 0.43 tolerated(0.24) benign(0) TCGA-BF-A1PZ-01 18 14784332 14784332 T C ANKRD30B Intron 0.49 TCGA-BF-A1PZ-01 18 28576991 28576991 G A DSC3 Silent p.T753T 0.38 TCGA-BF-A1PZ-01 18 32409070 32409070 C T DTNA Intron 0.84 TCGA-BF-A1PZ-01 18 51888373 51888373 C T C18orf54 Intron 0.71 TCGA-BF-A1PZ-01 18 61390362 61390362 C T SERPINB11 Missense_Mutation p.S303F 0.44 deleterious(0.02) benign(0.047) TCGA-BF-A1PZ-01 19 10103516 10103516 G A COL5A3 Missense_Mutation p.P612L 0.52 unknown(0) TCGA-BF-A1PZ-01 19 10103517 10103517 G A COL5A3 Missense_Mutation p.P612S 0.52 unknown(0) TCGA-BF-A1PZ-01 19 12087920 12087920 C T ZNF763 Missense_Mutation p.S27L 0.50 tolerated(0.06) benign(0.033) TCGA-BF-A1PZ-01 19 35941380 35941380 G T FFAR2 Missense_Mutation p.R255L 0.13 deleterious(0) probably_damaging(0.986) TCGA-BF-A1PZ-01 19 36050767 36050767 C T ATP4A Missense_Mutation p.M332I 0.48 tolerated(0.37) benign(0.04) TCGA-BF-A1PZ-01 19 39071075 39071075 C T RYR1 Silent p.F4859F 0.20 TCGA-BF-A1PZ-01 19 41128911 41128911 C T LTBP4 Silent p.L1247L 0.56 TCGA-BF-A1PZ-01 19 41128912 41128912 T C LTBP4 Missense_Mutation p.L1247P 0.59 tolerated(0.25) benign(0.004) TCGA-BF-A1PZ-01 19 41903196 41903196 G A EXOSC5 Missense_Mutation p.A13V 0.28 tolerated_low_confidence(0.27) benign(0.016) TCGA-BF-A1PZ-01 19 46444131 46444131 T C NOVA2 Missense_Mutation p.M157V 0.42 deleterious(0.03) unknown(0) TCGA-BF-A1PZ-01 19 48848429 48848429 C T TMEM143 Silent p.Q184Q 0.52 TCGA-BF-A1PZ-01 19 50775148 50775148 C A MYH14 Missense_Mutation p.Q1072K 0.12 tolerated(0.39) benign(0.009) TCGA-BF-A1PZ-01 19 52569243 52569243 C - ZNF841 Frame_Shift_Del p.G631Afs*10 0.20 TCGA-BF-A1PZ-01 19 52618538 52618538 G A ZNF616 Missense_Mutation p.H627Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PZ-01 19 54254478 54254478 C T MIR522 RNA 0.40 TCGA-BF-A1PZ-01 19 56249681 56249681 C T NLRP9 Silent p.K20K 0.43 TCGA-BF-A1PZ-01 19 686951 686951 C T PRSS57 Missense_Mutation p.D207N 0.50 tolerated(0.42) benign(0.115) TCGA-BF-A1PZ-01 19 9073131 9073131 G A MUC16 Missense_Mutation p.P4772L 0.36 unknown(0) TCGA-BF-A1PZ-01 19 9077387 9077387 C T MUC16 Silent p.G3353G 0.44 TCGA-BF-A1PZ-01 19 9237442 9237442 A G OR7G3 Missense_Mutation p.L62P 0.47 deleterious(0) benign(0.016) TCGA-BF-A1PZ-01 19 9297187 9297187 C T OR7D2 Missense_Mutation p.H244Y 0.32 deleterious_low_confidence(0.01) benign(0.443) TCGA-BF-A1PZ-01 19 9324991 9324991 G A OR7D4 Missense_Mutation p.P175S 0.40 tolerated(0.06) possibly_damaging(0.687) TCGA-BF-A1PZ-01 1 10218481 10218481 C T UBE4B Silent p.T998T 0.93 TCGA-BF-A1PZ-01 1 109650609 109650609 C T C1orf194 Nonsense_Mutation p.W32* 0.94 TCGA-BF-A1PZ-01 1 109650610 109650610 C T C1orf194 Nonsense_Mutation p.W32* 0.95 TCGA-BF-A1PZ-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.82 tolerated(0.06) benign(0.006) TCGA-BF-A1PZ-01 1 144952265 144952265 C T PDE4DIP Missense_Mutation p.E152K 0.18 deleterious(0.01) benign(0.287) TCGA-BF-A1PZ-01 1 155161850 155161850 C T MUC1 Missense_Mutation p.G95R 0.95 tolerated(0.07) possibly_damaging(0.467) TCGA-BF-A1PZ-01 1 156756574 156756574 C T PRCC Missense_Mutation p.P231S 0.38 tolerated(0.19) benign(0.004) TCGA-BF-A1PZ-01 1 161681011 161681011 C T FCRLA Silent p.L105L 0.94 TCGA-BF-A1PZ-01 1 161681012 161681012 C T FCRLA Nonsense_Mutation p.Q106* 0.97 TCGA-BF-A1PZ-01 1 16921465 16921465 G A NBPF1 5'UTR 0.25 TCGA-BF-A1PZ-01 1 173930261 173930261 G A RC3H1 Missense_Mutation p.P775L 0.90 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PZ-01 1 196392194 196392194 C T KCNT2 Missense_Mutation p.D391N 0.70 tolerated(0.1) probably_damaging(0.995) TCGA-BF-A1PZ-01 1 200973950 200973950 G A KIF21B Missense_Mutation p.R282W 0.53 deleterious(0) probably_damaging(0.914) TCGA-BF-A1PZ-01 1 202571173 202571173 C T SYT2 Missense_Mutation p.E216K 0.38 deleterious(0) probably_damaging(0.995) TCGA-BF-A1PZ-01 1 215901637 215901637 G A USH2A Missense_Mutation p.P3934L 0.92 possibly_damaging(0.768) TCGA-BF-A1PZ-01 1 228003816 228003816 G A PRSS38 Silent p.G58G 0.91 TCGA-BF-A1PZ-01 1 23191380 23191380 C T EPHB2 Silent p.S326S 0.86 TCGA-BF-A1PZ-01 1 235969220 235969220 G A LYST Silent p.S1072S 0.94 TCGA-BF-A1PZ-01 1 248004278 248004278 C T OR11L1 Silent p.R307R 0.34 TCGA-BF-A1PZ-01 1 248512755 248512755 C T OR14C36 Missense_Mutation p.P227S 0.91 deleterious(0.04) possibly_damaging(0.764) TCGA-BF-A1PZ-01 1 27874405 27874405 A T AHDC1 Missense_Mutation p.F1408I 0.83 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-BF-A1PZ-01 1 33478818 33478818 G A AK2 Silent p.S228S 0.86 TCGA-BF-A1PZ-01 1 35350619 35350619 C T DLGAP3 Missense_Mutation p.E654K 0.90 tolerated(0.31) probably_damaging(0.992) TCGA-BF-A1PZ-01 1 47276620 47276620 G A CYP4B1 Silent p.G107G 1.00 TCGA-BF-A1PZ-01 1 892575 892575 G A NOC2L Silent p.F86F 0.93 TCGA-BF-A1PZ-01 1 97544568 97544568 C T DPYD Silent p.K1014K 0.77 TCGA-BF-A1PZ-01 20 16355038 16355038 G A KIF16B Nonsense_Mutation p.Q1072* 0.45 TCGA-BF-A1PZ-01 20 16360709 16360709 G A KIF16B Silent p.I646I 0.44 TCGA-BF-A1PZ-01 20 29978343 29978343 C T DEFB119 5'Flank 0.50 TCGA-BF-A1PZ-01 20 3129453 3129453 G A FASTKD5 Silent p.A88A 0.41 TCGA-BF-A1PZ-01 20 3686463 3686463 C T SIGLEC1 Missense_Mutation p.G212S 0.48 tolerated(0.42) benign(0.131) TCGA-BF-A1PZ-01 20 44587939 44587939 G A ZNF335 Silent p.S718S 0.47 TCGA-BF-A1PZ-01 20 46262785 46262785 C T NCOA3 Intron 0.37 TCGA-BF-A1PZ-01 20 50418970 50418970 G A SALL4 5'UTR 0.39 TCGA-BF-A1PZ-01 21 37600017 37600017 C T DOPEY2 Missense_Mutation p.P503S 0.42 deleterious(0) probably_damaging(0.992) TCGA-BF-A1PZ-01 21 38884820 38884820 G A DYRK1A Missense_Mutation p.V760I 0.45 deleterious_low_confidence(0.02) benign(0.037) TCGA-BF-A1PZ-01 21 39580553 39580553 G A DSCR10 RNA 0.84 TCGA-BF-A1PZ-01 21 41559187 41559187 C A DSCAM Splice_Site p.X884_splice 0.89 TCGA-BF-A1PZ-01 21 43708082 43708082 C T ABCG1 Missense_Mutation p.H353Y 0.70 tolerated(0.52) benign(0) TCGA-BF-A1PZ-01 22 17472893 17472893 C T GAB4 Silent p.Q116Q 0.42 TCGA-BF-A1PZ-01 22 17583071 17583071 C T IL17RA Missense_Mutation p.A214V 0.37 tolerated(0.26) benign(0.048) TCGA-BF-A1PZ-01 22 21343934 21343934 T G LZTR1 Missense_Mutation p.I205S 0.57 deleterious(0) possibly_damaging(0.598) TCGA-BF-A1PZ-01 22 24034331 24034331 G A RGL4 Silent p.T38T 0.41 TCGA-BF-A1PZ-01 22 37876786 37876786 G A MFNG Missense_Mutation p.P93S 0.37 tolerated(0.05) benign(0.023) TCGA-BF-A1PZ-01 22 42608868 42608868 G A TCF20 Missense_Mutation p.P815L 0.43 probably_damaging(0.999) TCGA-BF-A1PZ-01 22 49103657 49103657 G A FAM19A5 Splice_Site p.X130_splice 0.47 TCGA-BF-A1PZ-01 22 51178259 51178259 G A ACR Missense_Mutation p.G140E 0.53 tolerated(0.7) benign(0.036) TCGA-BF-A1PZ-01 2 10807351 10807351 G A NOL10 Missense_Mutation p.T195I 0.44 deleterious(0) possibly_damaging(0.796) TCGA-BF-A1PZ-01 2 130910948 130910948 G A SMPD4 Missense_Mutation p.P696S 0.39 deleterious(0.01) probably_damaging(0.959) TCGA-BF-A1PZ-01 2 145274949 145274949 G A ZEB2 5'UTR 0.48 TCGA-BF-A1PZ-01 2 15567905 15567905 A G NBAS Missense_Mutation p.S785P 0.17 tolerated(0.23) possibly_damaging(0.751) TCGA-BF-A1PZ-01 2 158617533 158617533 G A ACVR1 Missense_Mutation p.R375C 0.52 deleterious(0) possibly_damaging(0.882) TCGA-BF-A1PZ-01 2 168105186 168105186 A C XIRP2 Missense_Mutation p.K2428N 0.11 possibly_damaging(0.888) TCGA-BF-A1PZ-01 2 176812232 176812232 G A KIAA1715 Missense_Mutation p.P228S 0.42 deleterious(0.03) benign(0.066) TCGA-BF-A1PZ-01 2 176812233 176812233 G A KIAA1715 Silent p.S227S 0.42 TCGA-BF-A1PZ-01 2 179616174 179616174 C A TTN Intron 0.43 TCGA-BF-A1PZ-01 2 192700881 192700881 C T SDPR Missense_Mutation p.G349E 0.53 tolerated(0.26) benign(0.054) TCGA-BF-A1PZ-01 2 202446936 202446936 G A ALS2CR11 Missense_Mutation p.P174L 0.41 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PZ-01 2 219507642 219507642 G A ZNF142 Silent p.P1199P 0.55 TCGA-BF-A1PZ-01 2 225630519 225630519 C T DOCK10 Silent p.V2160V 0.61 TCGA-BF-A1PZ-01 2 228882461 228882461 G A SPHKAP Missense_Mutation p.L1037F 0.50 deleterious(0.04) benign(0.275) TCGA-BF-A1PZ-01 2 24261446 24261446 C T C2orf44 Missense_Mutation p.D307N 0.49 tolerated(0.06) benign(0.176) TCGA-BF-A1PZ-01 2 38977228 38977228 G A SRSF7 Missense_Mutation p.P46L 0.44 deleterious(0) probably_damaging(0.998) TCGA-BF-A1PZ-01 2 49381553 49381553 C T FSHR Missense_Mutation p.A2T 0.50 tolerated_low_confidence(0.32) benign(0.071) TCGA-BF-A1PZ-01 2 49381554 49381554 C T FSHR Translation_Start_Site p.M1? 0.47 tolerated_low_confidence(0.08) benign(0) TCGA-BF-A1PZ-01 2 72371154 72371154 G T CYP26B1 Silent p.S131S 0.09 TCGA-BF-A1PZ-01 2 97529814 97529814 G A SEMA4C Silent p.F393F 0.41 TCGA-BF-A1PZ-01 3 108627012 108627012 G A GUCA1C Nonsense_Mutation p.Q163* 0.44 TCGA-BF-A1PZ-01 3 11301037 11301037 C T HRH1 Missense_Mutation p.S105F 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-BF-A1PZ-01 3 119165876 119165876 G A TMEM39A Silent p.F188F 0.58 TCGA-BF-A1PZ-01 3 121340930 121340930 G A FBXO40 Nonsense_Mutation p.W218* 0.24 TCGA-BF-A1PZ-01 3 121658303 121658303 C T SLC15A2 Silent p.V623V 0.26 TCGA-BF-A1PZ-01 3 122121620 122121620 G C FAM162A Missense_Mutation p.R16S 0.33 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PZ-01 3 130405201 130405201 G A PIK3R4 Missense_Mutation p.S1110F 0.35 deleterious(0) possibly_damaging(0.471) TCGA-BF-A1PZ-01 3 133494371 133494371 G A TF Silent p.A594A 0.38 TCGA-BF-A1PZ-01 3 139173626 139173626 C T RBP2 Missense_Mutation p.G100E 0.37 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PZ-01 3 147131381 147131381 G A ZIC1 3'UTR 0.42 TCGA-BF-A1PZ-01 3 148759427 148759427 C T HLTF Silent p.K742K 0.38 TCGA-BF-A1PZ-01 3 151475314 151475314 C T AADACL2 Missense_Mutation p.P380S 0.41 deleterious(0.02) possibly_damaging(0.53) TCGA-BF-A1PZ-01 3 154027597 154027597 T G DHX36 Missense_Mutation p.I220L 0.48 tolerated(0.08) possibly_damaging(0.681) TCGA-BF-A1PZ-01 3 16216975 16216975 G A GALNT15 Missense_Mutation p.R106K 0.41 tolerated(0.18) benign(0.419) TCGA-BF-A1PZ-01 3 164697120 164697120 C T SI 3'UTR 0.44 TCGA-BF-A1PZ-01 3 164907975 164907975 C T SLITRK3 Missense_Mutation p.G215E 0.45 deleterious(0) probably_damaging(1) TCGA-BF-A1PZ-01 3 184910256 184910256 C T EHHADH Missense_Mutation p.E644K 0.40 deleterious(0.05) probably_damaging(0.973) TCGA-BF-A1PZ-01 3 188327486 188327486 C T LPP Missense_Mutation p.P323S 0.47 tolerated(0.24) benign(0.147) TCGA-BF-A1PZ-01 3 193210912 193210912 C T ATP13A4 Nonsense_Mutation p.W140* 0.41 TCGA-BF-A1PZ-01 3 21606113 21606113 T A ZNF385D Nonsense_Mutation p.K77* 0.38 TCGA-BF-A1PZ-01 3 38316117 38316117 C T SLC22A13 Silent p.L169L 0.33 TCGA-BF-A1PZ-01 3 3886938 3886938 G A LRRN1 Missense_Mutation p.G205R 0.48 tolerated(0.48) benign(0.066) TCGA-BF-A1PZ-01 3 42610483 42610483 G A SEC22C Missense_Mutation p.S19L 0.32 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PZ-01 3 49699732 49699732 C T BSN Missense_Mutation p.S3485F 0.55 unknown(0) TCGA-BF-A1PZ-01 3 49898722 49898722 C T CAMKV Silent p.L151L 0.32 TCGA-BF-A1PZ-01 3 52436850 52436850 A G BAP1 Missense_Mutation p.I643T 0.45 deleterious(0) probably_damaging(0.997) TCGA-BF-A1PZ-01 3 52812485 52812485 G A ITIH1 Missense_Mutation p.E90K 0.39 deleterious(0) probably_damaging(0.996) TCGA-BF-A1PZ-01 3 7620310 7620310 C T GRM7 Nonsense_Mutation p.R573* 0.43 TCGA-BF-A1PZ-01 4 15627231 15627231 A C FBXL5 Missense_Mutation p.H498Q 0.58 tolerated_low_confidence(0.3) benign(0.197) TCGA-BF-A1PZ-01 4 55139894 55139894 C T PDGFRA Missense_Mutation p.P519S 0.87 tolerated(0.68) benign(0.018) TCGA-BF-A1PZ-01 4 70359506 70359506 G A UGT2B4 Nonsense_Mutation p.R259* 0.84 TCGA-BF-A1PZ-01 4 8220074 8220074 G A SH3TC1 Missense_Mutation p.A306T 0.66 deleterious(0.03) benign(0.037) TCGA-BF-A1PZ-01 4 8417696 8417696 G A ACOX3 Missense_Mutation p.P59S 0.17 deleterious(0.04) probably_damaging(0.947) TCGA-BF-A1PZ-01 4 8417697 8417697 G T ACOX3 Missense_Mutation p.D58E 0.16 deleterious(0.01) benign(0.272) TCGA-BF-A1PZ-01 4 96171773 96171773 G A UNC5C Missense_Mutation p.R214W 0.46 deleterious(0.02) probably_damaging(0.981) TCGA-BF-A1PZ-01 5 140474589 140474589 G A PCDHB2 Missense_Mutation p.G72E 0.88 tolerated_low_confidence(0.08) benign(0.043) TCGA-BF-A1PZ-01 5 145439717 145439717 C A SH3RF2 Missense_Mutation p.P615Q 0.36 deleterious(0.01) possibly_damaging(0.602) TCGA-BF-A1PZ-01 5 145613065 145613065 T G RBM27 Missense_Mutation p.D301E 0.86 deleterious(0) probably_damaging(0.984) TCGA-BF-A1PZ-01 5 153190584 153190584 G A GRIA1 Splice_Site p.X851_splice 0.81 TCGA-BF-A1PZ-01 5 153374484 153374484 G A FAM114A2 Silent p.L460L 0.94 TCGA-BF-A1PZ-01 5 169494644 169494644 G A DOCK2 Missense_Mutation p.G1533E 0.89 deleterious(0) probably_damaging(1) TCGA-BF-A1PZ-01 5 42808366 42808366 T C SEPP1 Silent p.Q30Q 0.89 TCGA-BF-A1PZ-01 5 64766717 64766717 C T ADAMTS6 Missense_Mutation p.G117E 0.89 tolerated(0.1) benign(0.297) TCGA-BF-A1PZ-01 5 76249874 76249874 C T CRHBP Missense_Mutation p.L66F 0.85 tolerated(0.14) possibly_damaging(0.611) TCGA-BF-A1PZ-01 6 116752185 116752185 C T DSE Missense_Mutation p.L247F 0.83 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A1PZ-01 6 132206095 132206095 C T ENPP1 Missense_Mutation p.T779I 0.81 tolerated(0.1) benign(0.013) TCGA-BF-A1PZ-01 6 136667071 136667071 G A MAP7 Missense_Mutation p.P743L 0.80 deleterious(0) unknown(0) TCGA-BF-A1PZ-01 6 136667072 136667072 G A MAP7 Missense_Mutation p.P743S 0.80 tolerated(0.06) unknown(0) TCGA-BF-A1PZ-01 6 136944008 136944008 C T MAP3K5 Missense_Mutation p.E710K 0.78 deleterious(0) probably_damaging(0.96) TCGA-BF-A1PZ-01 6 146127255 146127255 C T FBXO30 Missense_Mutation p.R96Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-A1PZ-01 6 161123349 161123349 G A PLG Missense_Mutation p.E5K 0.68 tolerated(1) benign(0.005) TCGA-BF-A1PZ-01 6 27834907 27834907 G A HIST1H1B Missense_Mutation p.P134L 0.86 tolerated(0.52) unknown(0) TCGA-BF-A1PZ-01 6 30859856 30859856 G T DDR1 Missense_Mutation p.R248L 0.09 tolerated(0.19) possibly_damaging(0.854) TCGA-BF-A1PZ-01 6 39158965 39158965 C T KCNK5 Missense_Mutation p.E401K 0.90 tolerated(0.05) benign(0.104) TCGA-BF-A1PZ-01 6 52051221 52051221 G A IL17A 5'UTR 0.97 TCGA-BF-A1PZ-01 7 136700449 136700449 G A CHRM2 Silent p.E279E 0.50 TCGA-BF-A1PZ-01 7 142223993 142223993 C T TRBV11-1 Silent p.L58L 0.40 TCGA-BF-A1PZ-01 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.17 TCGA-BF-A1PZ-01 7 143175155 143175155 G A TAS2R41 Missense_Mutation p.V64M 0.46 tolerated(0.25) benign(0.152) TCGA-BF-A1PZ-01 7 143747652 143747652 G A OR2A5 Missense_Mutation p.R53K 0.40 tolerated(0.07) benign(0.007) TCGA-BF-A1PZ-01 7 28848877 28848877 G A CREB5 Missense_Mutation p.R367Q 0.46 tolerated(0.05) unknown(0) TCGA-BF-A1PZ-01 7 30921793 30921793 C T FAM188B Intron 0.39 TCGA-BF-A1PZ-01 7 64167466 64167466 C T ZNF107 Missense_Mutation p.H262Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-BF-A1PZ-01 7 64438953 64438953 G A ZNF117 Silent p.P332P 0.35 TCGA-BF-A1PZ-01 7 71175764 71175764 G A WBSCR17 Missense_Mutation p.E507K 0.66 tolerated(0.38) benign(0.399) TCGA-BF-A1PZ-01 7 72418883 72418883 C T POM121 Silent p.H958H 0.53 TCGA-BF-A1PZ-01 7 72418884 72418884 C T POM121 Nonsense_Mutation p.Q959* 0.56 TCGA-BF-A1PZ-01 7 74234527 74234527 C T GTF2IRD2 Missense_Mutation p.E200K 0.33 tolerated_low_confidence(0.2) benign(0.002) TCGA-BF-A1PZ-01 7 81600048 81600048 C T CACNA2D1 Missense_Mutation p.G716E 0.41 deleterious(0) probably_damaging(0.971) TCGA-BF-A1PZ-01 7 82763974 82763974 C T PCLO Missense_Mutation p.M964I 0.33 unknown(0) TCGA-BF-A1PZ-01 8 100866132 100866132 G A VPS13B Silent p.R3530R 0.90 TCGA-BF-A1PZ-01 8 103357695 103357695 G A UBR5 Missense_Mutation p.S272F 0.85 deleterious(0) probably_damaging(0.915) TCGA-BF-A1PZ-01 8 131812710 131812710 G A ADCY8 Silent p.L1008L 0.85 TCGA-BF-A1PZ-01 8 131861907 131861907 G A ADCY8 Missense_Mutation p.R785W 0.89 deleterious(0) benign(0.016) TCGA-BF-A1PZ-01 8 131861908 131861908 G A ADCY8 Silent p.A784A 0.89 TCGA-BF-A1PZ-01 8 139165247 139165247 G A FAM135B Missense_Mutation p.H491Y 0.90 tolerated(0.48) benign(0.002) TCGA-BF-A1PZ-01 8 145947433 145947433 G A ZNF251 Missense_Mutation p.P538S 0.85 tolerated(0.08) possibly_damaging(0.641) TCGA-BF-A1PZ-01 8 28837649 28837649 C T HMBOX1 Nonsense_Mutation p.Q188* 0.84 TCGA-BF-A1PZ-01 8 3165304 3165304 C T CSMD1 Missense_Mutation p.R1288Q 0.92 probably_damaging(0.976) TCGA-BF-A1PZ-01 8 35544076 35544076 G A UNC5D Nonsense_Mutation p.W311* 0.86 TCGA-BF-A1PZ-01 8 41554043 41554043 C T ANK1 Missense_Mutation p.G974D 0.82 deleterious(0.02) probably_damaging(0.954) TCGA-BF-A1PZ-01 8 56864528 56864528 G C LYN Missense_Mutation p.S164T 0.83 tolerated(0.11) benign(0.146) TCGA-BF-A1PZ-01 8 57224797 57224797 G A SDR16C5 Silent p.I128I 0.85 TCGA-BF-A1PZ-01 8 61765709 61765709 C T CHD7 Missense_Mutation p.S2142F 0.94 benign(0.015) TCGA-BF-A1PZ-01 9 101536204 101536204 C T ANKS6 Silent p.Q592Q 0.42 TCGA-BF-A1PZ-01 9 107266590 107266590 G A OR13F1 Missense_Mutation p.G16E 0.31 deleterious(0.01) probably_damaging(1) TCGA-BF-A1PZ-01 9 120475528 120475528 C T TLR4 Silent p.S374S 0.47 TCGA-BF-A1PZ-01 9 127700878 127700878 C T GOLGA1 Missense_Mutation p.G38E 0.43 deleterious(0) probably_damaging(1) TCGA-BF-A1PZ-01 9 134016001 134016001 C T NUP214 Missense_Mutation p.P400S 0.38 unknown(0) TCGA-BF-A1PZ-01 9 2718835 2718835 G A KCNV2 Missense_Mutation p.V366M 0.87 tolerated(0.33) benign(0.148) TCGA-BF-A1PZ-01 9 33922684 33922684 C T UBAP2 Splice_Site p.X1088_splice 0.85 TCGA-BF-A1PZ-01 9 38586238 38586238 C T ANKRD18A Missense_Mutation p.G730E 1.00 tolerated(0.19) benign(0.003) TCGA-BF-A1PZ-01 9 80043925 80043925 C T GNA14 Silent p.S207S 0.40 TCGA-BF-A1PZ-01 9 85862975 85862982 TCCAAAAG AAAAAAA FRMD3 Frame_Shift_Del p.L549Ffs*57 0.09 TCGA-BF-A1PZ-01 X 100645981 100645981 C T RPL36A Missense_Mutation p.P20S 0.73 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-BF-A1PZ-01 X 101139401 101139401 G A ZMAT1 Missense_Mutation p.S333F 0.76 tolerated(0.55) benign(0.007) TCGA-BF-A1PZ-01 X 105277518 105277518 C T SERPINA7 Silent p.G407G 0.88 TCGA-BF-A1PZ-01 X 111095655 111095655 C A TRPC5 Missense_Mutation p.W416C 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1PZ-01 X 12905811 12905811 G A TLR7 Silent p.L728L 0.42 TCGA-BF-A1PZ-01 X 129804005 129804005 G A ENOX2 Missense_Mutation p.P239S 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-BF-A1PZ-01 X 132160163 132160163 G A USP26 Missense_Mutation p.P696S 0.39 tolerated(0.59) possibly_damaging(0.744) TCGA-BF-A1PZ-01 X 134186036 134186036 C T FAM127B Missense_Mutation p.G35R 0.39 tolerated(0.05) benign(0.371) TCGA-BF-A1PZ-01 X 151818324 151818324 G A GABRQ Missense_Mutation p.E244K 0.41 tolerated(0.14) probably_damaging(0.966) TCGA-BF-A1PZ-01 X 15540570 15540570 C T BMX Silent p.S204S 0.53 TCGA-BF-A1PZ-01 X 18276320 18276320 G A SCML2 Missense_Mutation p.P373S 0.32 deleterious(0.03) benign(0.158) TCGA-BF-A1PZ-01 X 27765849 27765849 C T DCAF8L2 Silent p.F279F 0.43 TCGA-BF-A1PZ-01 X 27840402 27840402 C T MAGEB10 Missense_Mutation p.R327C 0.39 tolerated(0.08) unknown(0) TCGA-BF-A1PZ-01 X 37979716 37979716 C A SYTL5 Missense_Mutation p.Q590K 0.09 tolerated(0.19) benign(0.184) TCGA-BF-A1PZ-01 X 40506428 40506428 G A CXorf38 Intron 0.42 TCGA-BF-A1PZ-01 X 41206955 41206955 G T DDX3X Missense_Mutation p.D658Y 0.36 deleterious(0) unknown(0) TCGA-BF-A1PZ-01 X 47445095 47445095 G A TIMP1 Intron 0.42 TCGA-BF-A1PZ-01 X 49021239 49021239 G A MAGIX Silent p.L106L 0.40 TCGA-BF-A1PZ-01 X 53576138 53576138 G A HUWE1 Missense_Mutation p.H3273Y 0.52 benign(0.152) TCGA-BF-A1PZ-01 X 53576139 53576139 T A HUWE1 Silent p.L3272L 0.51 TCGA-BF-A1PZ-01 X 55116953 55116953 G A PAGE2 Missense_Mutation p.E35K 0.54 tolerated(0.24) probably_damaging(0.997) TCGA-BF-A1Q0-01 10 104459196 104459196 C T ARL3 Nonsense_Mutation p.W66* 0.27 TCGA-BF-A1Q0-01 10 124395566 124395566 C T DMBT1 Missense_Mutation p.S2074F 0.19 deleterious(0.02) probably_damaging(0.944) TCGA-BF-A1Q0-01 10 124593240 124593240 G A CUZD1 Silent p.S533S 0.37 TCGA-BF-A1Q0-01 10 125521563 125521563 C T CPXM2 Nonsense_Mutation p.W534* 0.28 TCGA-BF-A1Q0-01 10 30315246 30315246 C T KIAA1462 Silent p.R1277R 0.34 TCGA-BF-A1Q0-01 10 31803585 31803585 A T ZEB1 Nonsense_Mutation p.K248* 0.22 TCGA-BF-A1Q0-01 10 33510678 33510678 C T NRP1 Missense_Mutation p.M417I 0.32 deleterious(0.02) benign(0.004) TCGA-BF-A1Q0-01 10 48389376 48389376 G A RBP3 Missense_Mutation p.A501V 0.41 tolerated(0.25) possibly_damaging(0.787) TCGA-BF-A1Q0-01 10 48414365 48414365 C T GDF2 Missense_Mutation p.G168E 0.44 tolerated(0.19) probably_damaging(0.98) TCGA-BF-A1Q0-01 10 50311670 50311670 C T VSTM4 Intron 0.21 TCGA-BF-A1Q0-01 10 50681610 50681610 G A ERCC6 Silent p.F874F 0.38 TCGA-BF-A1Q0-01 10 52103437 52103437 G A SGMS1 Silent p.F146F 0.22 TCGA-BF-A1Q0-01 10 52389895 52389895 C T RP11-50E11.3 RNA 0.37 TCGA-BF-A1Q0-01 10 5415751 5415751 C T UCN3 Missense_Mutation p.P23L 0.20 deleterious(0.03) benign(0) TCGA-BF-A1Q0-01 10 5435601 5435601 G A TUBAL3 Missense_Mutation p.A407V 0.24 deleterious_low_confidence(0) benign(0.131) TCGA-BF-A1Q0-01 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.26 TCGA-BF-A1Q0-01 10 61833835 61833835 T C ANK3 Silent p.E2268E 0.23 TCGA-BF-A1Q0-01 10 70044013 70044013 C T PBLD Missense_Mutation p.G263E 0.23 tolerated(0.56) benign(0.001) TCGA-BF-A1Q0-01 10 73857029 73857029 G A ASCC1 3'UTR 0.16 TCGA-BF-A1Q0-01 10 75407338 75407338 C T SYNPO2L Missense_Mutation p.G691E 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 10 7769746 7769746 T A ITIH2 Missense_Mutation p.S412T 0.45 deleterious(0.01) probably_damaging(0.911) TCGA-BF-A1Q0-01 10 88702347 88702347 C T MMRN2 Missense_Mutation p.G732S 0.34 tolerated(0.82) benign(0.047) TCGA-BF-A1Q0-01 10 92509030 92509030 G A HTR7 Silent p.I287I 0.19 TCGA-BF-A1Q0-01 10 92660467 92660467 C A RPP30 Intron 0.44 TCGA-BF-A1Q0-01 10 96535211 96535211 G A CYP2C19 Silent p.R132R 0.28 TCGA-BF-A1Q0-01 10 98392694 98392694 G A PIK3AP1 Intron 0.20 TCGA-BF-A1Q0-01 11 10585914 10585914 G T LYVE1 Silent p.S31S 0.13 TCGA-BF-A1Q0-01 11 106681104 106681104 C T GUCY1A2 Missense_Mutation p.R436Q 0.56 deleterious(0.02) possibly_damaging(0.742) TCGA-BF-A1Q0-01 11 112042594 112042594 C T TEX12 Silent p.F109F 0.51 TCGA-BF-A1Q0-01 11 1156652 1156652 C T MUC5AC Silent p.L223L 0.32 TCGA-BF-A1Q0-01 11 117150966 117150966 C T RNF214 Missense_Mutation p.T379I 0.16 tolerated(0.07) probably_damaging(0.966) TCGA-BF-A1Q0-01 11 117342587 117342587 C T DSCAML1 Missense_Mutation p.A1044T 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-BF-A1Q0-01 11 120312852 120312852 T C ARHGEF12 Missense_Mutation p.S415P 0.27 tolerated(0.32) benign(0.168) TCGA-BF-A1Q0-01 11 124294453 124294453 G A OR8B4 Silent p.F105F 0.25 TCGA-BF-A1Q0-01 11 15994523 15994523 G A SOX6 Silent p.L753L 0.43 TCGA-BF-A1Q0-01 11 1605974 1605974 G A KRTAP5-1 Missense_Mutation p.S169F 0.35 deleterious_low_confidence(0) unknown(0) TCGA-BF-A1Q0-01 11 17464857 17464857 G A ABCC8 Silent p.I445I 0.25 TCGA-BF-A1Q0-01 11 17517217 17517217 G C USH1C Missense_Mutation p.L852V 0.17 tolerated_low_confidence(0.32) benign(0.009) TCGA-BF-A1Q0-01 11 18253024 18253024 C T SAA4 3'UTR 0.20 TCGA-BF-A1Q0-01 11 19077497 19077497 G A MRGPRX2 Silent p.V151V 0.30 TCGA-BF-A1Q0-01 11 20104716 20104716 C T NAV2 Missense_Mutation p.S1889F 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-BF-A1Q0-01 11 2356804 2356804 C T CD81-AS1 Intron 0.09 TCGA-BF-A1Q0-01 11 24750756 24750756 T A LUZP2 Missense_Mutation p.F35Y 0.12 deleterious(0) probably_damaging(0.969) TCGA-BF-A1Q0-01 11 30557687 30557687 G A MPPED2 Missense_Mutation p.A55V 0.24 tolerated(0.1) benign(0) TCGA-BF-A1Q0-01 11 3381470 3381470 G A ZNF195 Silent p.L256L 0.13 TCGA-BF-A1Q0-01 11 33880940 33880940 C T LMO2 Missense_Mutation p.D216N 0.37 deleterious(0) probably_damaging(0.991) TCGA-BF-A1Q0-01 11 36453412 36453412 C T PRR5L Missense_Mutation p.L102F 0.10 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 11 36615566 36615566 C A RAG2 Missense_Mutation p.K51N 0.14 deleterious(0.03) benign(0.004) TCGA-BF-A1Q0-01 11 40136709 40136709 G A LRRC4C Silent p.S378S 0.19 TCGA-BF-A1Q0-01 11 4616195 4616195 G A OR52I1 Nonsense_Mutation p.W309* 0.19 TCGA-BF-A1Q0-01 11 46341862 46341862 G A CREB3L1 Missense_Mutation p.E436K 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-BF-A1Q0-01 11 47825067 47825067 G A NUP160 Missense_Mutation p.P900S 0.46 tolerated(0.06) benign(0.418) TCGA-BF-A1Q0-01 11 55036750 55036750 C T TRIM48 Missense_Mutation p.P204L 0.62 deleterious(0.01) probably_damaging(0.967) TCGA-BF-A1Q0-01 11 55111010 55111010 C T OR4A16 Missense_Mutation p.L112F 0.14 deleterious_low_confidence(0.01) benign(0.295) TCGA-BF-A1Q0-01 11 5529836 5529836 C T UBQLN3 Missense_Mutation p.G318E 0.23 deleterious(0.05) benign(0.064) TCGA-BF-A1Q0-01 11 56143797 56143797 G A OR8U1 Missense_Mutation p.G233E 0.13 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 11 57069397 57069397 G A TNKS1BP1 Missense_Mutation p.P1619S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1Q0-01 11 5730807 5730807 C T TRIM22 Nonsense_Mutation p.R476* 0.10 TCGA-BF-A1Q0-01 11 5758241 5758241 C T OR56B1 Silent p.V165V 0.13 TCGA-BF-A1Q0-01 11 59940418 59940418 T A MS4A6A 3'UTR 0.30 TCGA-BF-A1Q0-01 11 61026531 61026531 C A VWCE Missense_Mutation p.L828F 0.11 tolerated_low_confidence(0.14) possibly_damaging(0.572) TCGA-BF-A1Q0-01 11 61048507 61048507 G A VWCE Missense_Mutation p.P330S 0.18 tolerated(0.15) benign(0.014) TCGA-BF-A1Q0-01 11 61300491 61300491 G A SYT7 Silent p.L182L 0.15 TCGA-BF-A1Q0-01 11 61615704 61615704 C T FADS2 Missense_Mutation p.P231L 0.17 deleterious(0) probably_damaging(0.986) TCGA-BF-A1Q0-01 11 62292054 62292054 G A AHNAK Missense_Mutation p.P3279S 0.27 probably_damaging(0.999) TCGA-BF-A1Q0-01 11 62748549 62748549 C T SLC22A6 Silent p.K315K 0.12 TCGA-BF-A1Q0-01 11 64024120 64024120 A G PLCB3 Missense_Mutation p.Y299C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 11 64453131 64453131 C T NRXN2 Missense_Mutation p.R380Q 0.20 deleterious(0) benign(0.428) TCGA-BF-A1Q0-01 11 64726865 64726865 G A C11orf85 Missense_Mutation p.P5S 0.26 deleterious(0.02) probably_damaging(0.932) TCGA-BF-A1Q0-01 11 6499989 6499989 G A ARFIP2 Silent p.S172S 0.17 TCGA-BF-A1Q0-01 11 65266456 65266456 G A MALAT1 RNA 0.28 TCGA-BF-A1Q0-01 11 65267942 65267942 T A MALAT1 RNA 0.08 TCGA-BF-A1Q0-01 11 6898300 6898300 C T OR10A4 Missense_Mutation p.S141F 0.35 tolerated(0.11) benign(0.218) TCGA-BF-A1Q0-01 11 70171109 70171109 G T PPFIA1 Missense_Mutation p.D175Y 0.21 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 11 71249740 71249740 C T KRTAP5-8 3'UTR 0.14 TCGA-BF-A1Q0-01 11 72289356 72289356 C T PDE2A Missense_Mutation p.E846K 0.19 deleterious(0.03) benign(0.378) TCGA-BF-A1Q0-01 11 75431212 75431212 C T MOGAT2 Silent p.I89I 0.28 TCGA-BF-A1Q0-01 11 75501706 75501706 G A DGAT2 Missense_Mutation p.G120D 0.13 deleterious(0.03) possibly_damaging(0.866) TCGA-BF-A1Q0-01 11 76063416 76063416 A T PRKRIR Missense_Mutation p.F260I 0.18 deleterious(0) probably_damaging(0.982) TCGA-BF-A1Q0-01 11 76063417 76063417 G A PRKRIR Silent p.F259F 0.17 TCGA-BF-A1Q0-01 11 76834853 76834853 C T CAPN5 Silent p.P620P 0.10 TCGA-BF-A1Q0-01 11 7817599 7817599 C T OR5P2 Silent p.L297L 0.43 TCGA-BF-A1Q0-01 11 7950061 7950061 G A OR10A6 Missense_Mutation p.S50F 0.21 tolerated(0.7) benign(0.003) TCGA-BF-A1Q0-01 11 7982175 7982175 G A NLRP10 Silent p.F328F 0.13 TCGA-BF-A1Q0-01 11 86382865 86382865 G C ME3 Missense_Mutation p.A41G 0.15 tolerated(0.33) benign(0) TCGA-BF-A1Q0-01 11 86519230 86519230 C T PRSS23 Missense_Mutation p.T182I 0.09 deleterious(0) possibly_damaging(0.485) TCGA-BF-A1Q0-01 11 88300835 88300835 G A GRM5 Silent p.I672I 0.19 TCGA-BF-A1Q0-01 11 92258115 92258115 G A FAT3 Splice_Site p.X1203_splice 0.17 TCGA-BF-A1Q0-01 11 92258116 92258116 T A FAT3 Splice_Site p.X1203_splice 0.17 TCGA-BF-A1Q0-01 11 93826787 93826787 G A HEPHL1 Silent p.E805E 0.14 TCGA-BF-A1Q0-01 12 100660858 100660858 C T SCYL2 5'Flank 0.24 TCGA-BF-A1Q0-01 12 101480503 101480503 C T ANO4 Silent p.F499F 0.21 TCGA-BF-A1Q0-01 12 108985573 108985573 C T TMEM119 Missense_Mutation p.G196E 0.52 deleterious(0) probably_damaging(0.949) TCGA-BF-A1Q0-01 12 113344786 113344786 G A OAS1 5'UTR 0.74 TCGA-BF-A1Q0-01 12 11506753 11506753 C T PRB1 Missense_Mutation p.G95E 0.31 tolerated_low_confidence(0.19) unknown(0) TCGA-BF-A1Q0-01 12 117271725 117271725 C T RNFT2 Silent p.I337I 0.38 TCGA-BF-A1Q0-01 12 117696212 117696212 C T NOS1 Missense_Mutation p.E841K 0.37 deleterious(0.04) possibly_damaging(0.751) TCGA-BF-A1Q0-01 12 118511792 118511792 G A VSIG10 Missense_Mutation p.P311S 0.61 deleterious(0.02) possibly_damaging(0.633) TCGA-BF-A1Q0-01 12 123497242 123497242 A T PITPNM2 Silent p.I111I 0.55 TCGA-BF-A1Q0-01 12 132547066 132547066 C A EP400 Silent p.L2718L 0.10 TCGA-BF-A1Q0-01 12 133252010 133252010 G T POLE Silent p.P400P 0.13 TCGA-BF-A1Q0-01 12 133324813 133324813 C T ANKLE2 Missense_Mutation p.E318K 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A1Q0-01 12 13716751 13716751 C T GRIN2B Missense_Mutation p.E1141K 0.61 deleterious(0.02) possibly_damaging(0.738) TCGA-BF-A1Q0-01 12 18691116 18691116 C T PIK3C2G Missense_Mutation p.S1076L 0.43 deleterious(0) probably_damaging(0.938) TCGA-BF-A1Q0-01 12 19418687 19418687 A G PLEKHA5 Missense_Mutation p.E205G 0.48 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 12 21172187 21172187 T A SLCO1B7 Missense_Mutation p.L31M 0.58 deleterious(0) probably_damaging(0.994) TCGA-BF-A1Q0-01 12 29667498 29667498 T C TMTC1 Missense_Mutation p.K783E 0.09 tolerated(0.49) benign(0.101) TCGA-BF-A1Q0-01 12 3030044 3030044 C T TULP3 Missense_Mutation p.P70L 0.64 deleterious(0.05) benign(0.248) TCGA-BF-A1Q0-01 12 32135922 32135922 C T KIAA1551 Missense_Mutation p.S678F 0.49 deleterious(0) probably_damaging(0.991) TCGA-BF-A1Q0-01 12 33529775 33529775 G A SYT10 Missense_Mutation p.S521F 0.14 deleterious_low_confidence(0.02) benign(0.034) TCGA-BF-A1Q0-01 12 369044 369044 G A SLC6A13 Missense_Mutation p.P59S 0.64 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 12 46245553 46245553 C - ARID2 Frame_Shift_Del p.T1216Sfs*27 0.26 TCGA-BF-A1Q0-01 12 47629357 47629357 G A PCED1B Missense_Mutation p.E171K 0.42 tolerated(1) benign(0.001) TCGA-BF-A1Q0-01 12 52647088 52647088 C T KRT7 3'Flank 0.26 TCGA-BF-A1Q0-01 12 52711486 52711486 G A KRT83 Silent p.F243F 0.16 TCGA-BF-A1Q0-01 12 52779260 52779260 G A KRT84 Missense_Mutation p.S37F 0.21 tolerated(0.08) probably_damaging(0.979) TCGA-BF-A1Q0-01 12 52941659 52941659 G A KRT71 Silent p.I362I 0.12 TCGA-BF-A1Q0-01 12 52961997 52961997 C T KRT74 Missense_Mutation p.M437I 0.09 tolerated(0.68) benign(0.003) TCGA-BF-A1Q0-01 12 53040562 53040562 G A KRT2 Silent p.I477I 0.39 TCGA-BF-A1Q0-01 12 54798495 54798495 C T ITGA5 Missense_Mutation p.G470E 0.41 tolerated(0.06) probably_damaging(1) TCGA-BF-A1Q0-01 12 54925079 54925079 G A NCKAP1L Missense_Mutation p.G848S 0.15 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 12 56383810 56383810 A G RAB5B Silent p.R81R 0.40 TCGA-BF-A1Q0-01 12 56993772 56993772 G C BAZ2A Silent p.A1669A 0.18 TCGA-BF-A1Q0-01 12 56997418 56997418 G A BAZ2A Silent p.C1037C 0.19 TCGA-BF-A1Q0-01 12 57588878 57588878 C T LRP1 Missense_Mutation p.H2768Y 0.49 benign(0.187) TCGA-BF-A1Q0-01 12 57590918 57590918 G A LRP1 Missense_Mutation p.G3016S 0.60 benign(0.036) TCGA-BF-A1Q0-01 12 71094942 71094942 G A PTPRR Missense_Mutation p.S390L 0.37 tolerated(0.29) benign(0.031) TCGA-BF-A1Q0-01 12 71526510 71526510 G A TSPAN8 Missense_Mutation p.P180L 0.43 tolerated(0.27) benign(0) TCGA-BF-A1Q0-01 12 80765802 80765802 G A OTOGL Missense_Mutation p.E2238K 0.18 deleterious(0) possibly_damaging(0.658) TCGA-BF-A1Q0-01 12 8083865 8083865 G A SLC2A3 Silent p.I162I 0.57 TCGA-BF-A1Q0-01 12 90024357 90024357 C G ATP2B1 Missense_Mutation p.G285R 0.14 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 12 91348214 91348214 G A CCER1 Silent p.F102F 0.17 TCGA-BF-A1Q0-01 12 91545434 91545434 G A DCN Silent p.I294I 0.38 TCGA-BF-A1Q0-01 12 96354372 96354372 G A AMDHD1 Missense_Mutation p.D262N 0.33 deleterious(0) probably_damaging(0.994) TCGA-BF-A1Q0-01 13 109475492 109475492 T G MYO16 Missense_Mutation p.F299L 0.16 tolerated(0.66) benign(0.003) TCGA-BF-A1Q0-01 13 110847425 110847425 C T COL4A1 Silent p.Q442Q 0.16 TCGA-BF-A1Q0-01 13 113771173 113771173 G A F7 Missense_Mutation p.G222E 0.22 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 13 113960916 113960916 C T LAMP1 Missense_Mutation p.P60S 0.15 tolerated(0.98) benign(0.002) TCGA-BF-A1Q0-01 13 25265365 25265365 G A ATP12A Missense_Mutation p.E355K 0.33 deleterious(0) probably_damaging(0.99) TCGA-BF-A1Q0-01 13 37269376 37269376 T A SERTM1 Missense_Mutation p.F54Y 0.20 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BF-A1Q0-01 13 42273273 42273273 G A VWA8 Silent p.H1166H 0.12 TCGA-BF-A1Q0-01 13 42877183 42877183 T A AKAP11 Missense_Mutation p.F1434Y 0.26 tolerated(1) benign(0.005) TCGA-BF-A1Q0-01 13 49281176 49281176 G A CYSLTR2 Missense_Mutation p.V75I 0.28 tolerated(0.79) benign(0.012) TCGA-BF-A1Q0-01 13 70314608 70314608 C T KLHL1 Missense_Mutation p.D574N 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-BF-A1Q0-01 13 72131253 72131253 C T DACH1 Silent p.L493L 0.23 TCGA-BF-A1Q0-01 13 99063075 99063075 T C FARP1 Missense_Mutation p.S564P 0.14 deleterious(0.01) possibly_damaging(0.633) TCGA-BF-A1Q0-01 14 102477202 102477202 C T DYNC1H1 Silent p.A2177A 0.13 TCGA-BF-A1Q0-01 14 106091232 106091232 C T IGHG4 Splice_Site p.X221_splice 0.14 TCGA-BF-A1Q0-01 14 106452801 106452801 C T IGHV1-2 Missense_Mutation p.S74N 0.13 tolerated(1) benign(0.003) TCGA-BF-A1Q0-01 14 106866589 106866589 C T IGHV3-38 Nonsense_Mutation p.W55* 0.16 TCGA-BF-A1Q0-01 14 107113761 107113761 C T IGHV3-64 Missense_Mutation p.A112T 0.10 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-BF-A1Q0-01 14 107178854 107178854 G A IGHV2-70 Missense_Mutation p.P108L 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A1Q0-01 14 20215761 20215761 C T OR4Q3 Missense_Mutation p.P59S 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-BF-A1Q0-01 14 20344937 20344937 C T OR4K2 Missense_Mutation p.P171S 0.28 deleterious(0.02) benign(0.258) TCGA-BF-A1Q0-01 14 20711839 20711839 C T OR11H4 Missense_Mutation p.P297S 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-BF-A1Q0-01 14 22309433 22309433 C T TRAV12-1 Silent p.S3S 0.22 TCGA-BF-A1Q0-01 14 22740360 22740360 C T TRAV38-1 Silent p.F88F 0.12 TCGA-BF-A1Q0-01 14 23587820 23587820 C G CEBPE Missense_Mutation p.A161P 0.12 tolerated(0.29) benign(0) TCGA-BF-A1Q0-01 14 23846386 23846386 C T CMTM5 5'UTR 0.32 TCGA-BF-A1Q0-01 14 23946554 23946554 C T NGDN Missense_Mutation p.H287Y 0.33 tolerated(0.27) benign(0.085) TCGA-BF-A1Q0-01 14 24035370 24035370 C T AP1G2 Splice_Site p.X158_splice 0.10 TCGA-BF-A1Q0-01 14 24045149 24045149 C T JPH4 Missense_Mutation p.R299H 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-BF-A1Q0-01 14 24114495 24114495 C T DHRS2 Missense_Mutation p.P296L 0.36 deleterious_low_confidence(0) unknown(0) TCGA-BF-A1Q0-01 14 24708902 24708902 T C TINF2 3'UTR 0.39 TCGA-BF-A1Q0-01 14 24838834 24838834 G A NFATC4 Missense_Mutation p.R140Q 0.12 deleterious(0.03) probably_damaging(0.986) TCGA-BF-A1Q0-01 14 24898030 24898030 G A CBLN3 Silent p.V77V 0.21 TCGA-BF-A1Q0-01 14 50649239 50649239 A C SOS2 Missense_Mutation p.M267R 0.36 deleterious(0) probably_damaging(0.961) TCGA-BF-A1Q0-01 14 51376772 51376773 - C PYGL Frame_Shift_Ins p.E673Gfs*46 0.31 TCGA-BF-A1Q0-01 14 53539401 53539401 G T DDHD1 Missense_Mutation p.P473T 0.48 deleterious(0.01) probably_damaging(1) TCGA-BF-A1Q0-01 14 63473173 63473173 A G KCNH5 Missense_Mutation p.L72S 0.10 tolerated(0.08) possibly_damaging(0.876) TCGA-BF-A1Q0-01 14 68044880 68044880 C T PLEKHH1 Silent p.T905T 0.14 TCGA-BF-A1Q0-01 14 69256433 69256433 G A ZFP36L1 Silent p.L278L 0.18 TCGA-BF-A1Q0-01 14 70924317 70924317 C T ADAM21 Missense_Mutation p.S34F 0.43 tolerated(0.1) benign(0.068) TCGA-BF-A1Q0-01 14 73746042 73746042 G A NUMB Missense_Mutation p.P396L 0.11 deleterious(0.03) probably_damaging(0.945) TCGA-BF-A1Q0-01 14 74537937 74537937 G A ALDH6A1 Missense_Mutation p.P231S 0.10 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 14 74541683 74541683 G A ALDH6A1 Missense_Mutation p.S29L 0.15 tolerated(0.27) benign(0.007) TCGA-BF-A1Q0-01 14 77948741 77948741 G A ISM2 Silent p.F299F 0.49 TCGA-BF-A1Q0-01 14 94160683 94160683 G A UNC79 Missense_Mutation p.M2353I 0.28 deleterious(0.01) benign(0.009) TCGA-BF-A1Q0-01 14 94741753 94741753 C T PPP4R4 Missense_Mutation p.S831F 0.19 tolerated_low_confidence(0.06) benign(0.421) TCGA-BF-A1Q0-01 14 94780794 94780794 G A SERPINA6 Silent p.F64F 0.22 TCGA-BF-A1Q0-01 14 95108095 95108095 G A SERPINA13P RNA 0.19 TCGA-BF-A1Q0-01 14 99723888 99723888 C T BCL11B Missense_Mutation p.G116E 0.14 deleterious(0.02) benign(0.032) TCGA-BF-A1Q0-01 15 100942940 100942940 G A CERS3 Missense_Mutation p.P377L 0.22 tolerated(1) benign(0.005) TCGA-BF-A1Q0-01 15 23326585 23326585 G A HERC2P2 RNA 0.07 TCGA-BF-A1Q0-01 15 23811356 23811356 C T MKRN3 Missense_Mutation p.P143S 0.29 tolerated(0.47) benign(0.131) TCGA-BF-A1Q0-01 15 24923207 24923207 G A NPAP1 Silent p.G731G 0.14 TCGA-BF-A1Q0-01 15 24924379 24924379 G C NPAP1 Missense_Mutation p.C1122S 0.22 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-BF-A1Q0-01 15 25467413 25467413 C T SNORD115-27 3'Flank 0.50 TCGA-BF-A1Q0-01 15 43893105 43893105 T G STRC Silent p.P1603P 0.59 TCGA-BF-A1Q0-01 15 45415159 45415159 G A DUOXA1 Silent p.F18F 0.10 TCGA-BF-A1Q0-01 15 53908429 53908429 G A WDR72 Silent p.A658A 0.39 TCGA-BF-A1Q0-01 15 55474309 55474309 G A RSL24D1 3'UTR 0.37 TCGA-BF-A1Q0-01 15 62223331 62223331 G A VPS13C Missense_Mutation p.T1999I 0.44 tolerated(0.65) probably_damaging(0.999) TCGA-BF-A1Q0-01 15 66641719 66641719 G A TIPIN Silent p.F115F 0.08 TCGA-BF-A1Q0-01 15 71300792 71300792 G A LRRC49 Missense_Mutation p.G420E 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-BF-A1Q0-01 15 74637541 74637541 C A CYP11A1 Nonsense_Mutation p.E157* 0.19 TCGA-BF-A1Q0-01 15 75090581 75090581 G A CSK 5'UTR 0.30 TCGA-BF-A1Q0-01 15 78922166 78922166 G A CHRNB4 Missense_Mutation p.P161S 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-BF-A1Q0-01 15 79265721 79265721 G A RASGRF1 Missense_Mutation p.T1195I 0.16 deleterious(0) probably_damaging(0.988) TCGA-BF-A1Q0-01 15 83781551 83781551 C T TM6SF1 Missense_Mutation p.S32F 0.21 deleterious(0.04) possibly_damaging(0.901) TCGA-BF-A1Q0-01 15 84700118 84700118 G A ADAMTSL3 Missense_Mutation p.R1563K 0.12 tolerated(0.4) benign(0.002) TCGA-BF-A1Q0-01 15 85478717 85478717 G A SLC28A1 Missense_Mutation p.E517K 0.11 tolerated(0.36) probably_damaging(0.942) TCGA-BF-A1Q0-01 15 86124251 86124251 G A AKAP13 Silent p.P984P 0.08 TCGA-BF-A1Q0-01 15 88678351 88678351 G A NTRK3 Silent p.F395F 0.33 TCGA-BF-A1Q0-01 15 90276391 90276391 C T WDR93 Silent p.S495S 0.22 TCGA-BF-A1Q0-01 15 93007428 93007428 G A ST8SIA2 Missense_Mutation p.G314D 0.27 probably_damaging(1) TCGA-BF-A1Q0-01 16 1270426 1270426 C G CACNA1H Missense_Mutation p.P2165R 0.15 tolerated(0.3) benign(0.209) TCGA-BF-A1Q0-01 16 14041989 14041989 C T ERCC4 Missense_Mutation p.P846S 0.14 tolerated(0.27) benign(0.009) TCGA-BF-A1Q0-01 16 1811260 1811260 C T MAPK8IP3 Missense_Mutation p.P497L 0.17 tolerated(0.14) benign(0.022) TCGA-BF-A1Q0-01 16 20373753 20373753 G A PDILT Silent p.F463F 0.09 TCGA-BF-A1Q0-01 16 20486689 20486689 C T ACSM2A Silent p.L300L 0.11 TCGA-BF-A1Q0-01 16 23379253 23379253 C T SCNN1B Missense_Mutation p.P285S 0.37 tolerated(1) benign(0.026) TCGA-BF-A1Q0-01 16 2347406 2347406 C T ABCA3 Silent p.L729L 0.56 TCGA-BF-A1Q0-01 16 24922863 24922863 G A SLC5A11 3'UTR 0.40 TCGA-BF-A1Q0-01 16 29675698 29675698 G A SPN Missense_Mutation p.G217R 0.41 tolerated(0.28) benign(0.006) TCGA-BF-A1Q0-01 16 33647337 33647337 G A RP11-812E19.9 Missense_Mutation p.T88I 0.41 deleterious_low_confidence(0.03) benign(0.293) TCGA-BF-A1Q0-01 16 3367756 3367756 C T ZNF75A Missense_Mutation p.L260F 0.11 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 16 4311931 4311931 G A TFAP4 Missense_Mutation p.P125L 0.31 deleterious(0.01) benign(0.369) TCGA-BF-A1Q0-01 16 4311932 4311932 G A TFAP4 Missense_Mutation p.P125S 0.29 tolerated(0.12) benign(0.281) TCGA-BF-A1Q0-01 16 4408059 4408059 A T CORO7 Missense_Mutation p.W835R 0.39 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 16 53337980 53337980 T C CHD9 Missense_Mutation p.V2021A 0.29 benign(0.022) TCGA-BF-A1Q0-01 16 66948256 66948256 C T CDH16 Missense_Mutation p.D215N 0.12 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 16 69458503 69458503 C T CYB5B 5'UTR 0.50 TCGA-BF-A1Q0-01 16 70365679 70365679 G T DDX19B Missense_Mutation p.V360L 0.08 deleterious(0) probably_damaging(0.977) TCGA-BF-A1Q0-01 16 71007785 71007785 G A HYDIN Missense_Mutation p.H1726Y 0.15 benign(0.04) TCGA-BF-A1Q0-01 16 71025223 71025223 C T HYDIN Missense_Mutation p.D1288N 0.17 benign(0.04) TCGA-BF-A1Q0-01 16 71103214 71103214 G A HYDIN Missense_Mutation p.P644S 0.10 probably_damaging(0.991) TCGA-BF-A1Q0-01 16 71212863 71212863 C T HYDIN Missense_Mutation p.E117K 0.21 probably_damaging(0.916) TCGA-BF-A1Q0-01 16 74946186 74946186 G A WDR59 Silent p.F433F 0.18 TCGA-BF-A1Q0-01 16 77389917 77389917 G A ADAMTS18 Silent p.I460I 0.25 TCGA-BF-A1Q0-01 16 81077589 81077589 A T ATMIN Missense_Mutation p.S496C 0.30 tolerated(0.19) benign(0.013) TCGA-BF-A1Q0-01 16 82032986 82032986 G A SDR42E1 Silent p.L304L 0.38 TCGA-BF-A1Q0-01 16 82101883 82101883 G A HSD17B2 Missense_Mutation p.R125Q 0.43 tolerated(0.09) possibly_damaging(0.627) TCGA-BF-A1Q0-01 16 8735995 8735995 C T METTL22 Missense_Mutation p.P280S 0.23 tolerated(0.1) benign(0.168) TCGA-BF-A1Q0-01 16 8995010 8995010 G A USP7 Missense_Mutation p.S710F 0.13 tolerated(0.05) benign(0.046) TCGA-BF-A1Q0-01 16 9858016 9858016 G A GRIN2A Missense_Mutation p.H1129Y 0.13 tolerated(0.81) possibly_damaging(0.58) TCGA-BF-A1Q0-01 17 10401063 10401063 C T MYH1 Silent p.R1451R 0.32 TCGA-BF-A1Q0-01 17 10401064 10401064 C T MYH1 Missense_Mutation p.R1451K 0.23 tolerated(0.16) benign(0.032) TCGA-BF-A1Q0-01 17 10428104 10428104 C T MYH2 Silent p.R1647R 0.19 TCGA-BF-A1Q0-01 17 10438462 10438462 C T MYH2 Missense_Mutation p.G703D 0.40 deleterious(0) probably_damaging(0.972) TCGA-BF-A1Q0-01 17 12661584 12661584 A T MYOCD Intron 0.45 TCGA-BF-A1Q0-01 17 1373466 1373466 G A MYO1C Intron 0.30 TCGA-BF-A1Q0-01 17 1579541 1579541 A G PRPF8 Silent p.L838L 0.25 TCGA-BF-A1Q0-01 17 17168147 17168147 T A COPS3 Missense_Mutation p.N197I 0.59 deleterious(0) possibly_damaging(0.907) TCGA-BF-A1Q0-01 17 18051478 18051478 G A MYO15A Silent p.A2215A 0.48 TCGA-BF-A1Q0-01 17 26726582 26726582 C G SLC46A1 3'UTR 0.33 TCGA-BF-A1Q0-01 17 27613923 27613923 C T NUFIP2 Silent p.K363K 0.61 TCGA-BF-A1Q0-01 17 27807479 27807479 C T TAOK1 Silent p.S181S 0.45 TCGA-BF-A1Q0-01 17 33680866 33680866 T A SLFN11 Missense_Mutation p.I471F 0.25 deleterious(0) possibly_damaging(0.83) TCGA-BF-A1Q0-01 17 33680868 33680868 G A SLFN11 Missense_Mutation p.P470L 0.25 tolerated(0.08) probably_damaging(1) TCGA-BF-A1Q0-01 17 37899512 37899512 C T GRB7 Silent p.F204F 0.14 TCGA-BF-A1Q0-01 17 37899513 37899513 C T GRB7 Missense_Mutation p.R205W 0.16 deleterious(0) probably_damaging(0.997) TCGA-BF-A1Q0-01 17 38133095 38133095 C T GSDMA Silent p.F374F 0.20 TCGA-BF-A1Q0-01 17 3917765 3917765 G C ZZEF1 Missense_Mutation p.F2730L 0.48 deleterious(0) probably_damaging(0.998) TCGA-BF-A1Q0-01 17 3999198 3999198 C T ZZEF1 Missense_Mutation p.E614K 0.60 tolerated(0.16) probably_damaging(0.928) TCGA-BF-A1Q0-01 17 40971575 40971575 G A BECN1 Missense_Mutation p.P84L 0.17 tolerated(0.08) benign(0.105) TCGA-BF-A1Q0-01 17 40986569 40986569 T G PSME3 Nonsense_Mutation p.L38* 0.23 TCGA-BF-A1Q0-01 17 41053008 41053008 C T G6PC Missense_Mutation p.L39F 0.53 tolerated(0.15) probably_damaging(0.999) TCGA-BF-A1Q0-01 17 41477138 41477138 C T ARL4D Missense_Mutation p.S13F 0.17 tolerated(0.07) benign(0.328) TCGA-BF-A1Q0-01 17 41719371 41719371 C T MEOX1 Missense_Mutation p.M224I 0.18 deleterious(0) probably_damaging(0.968) TCGA-BF-A1Q0-01 17 41891659 41891659 G A MPP3 Silent p.S360S 0.34 TCGA-BF-A1Q0-01 17 41960700 41960700 C T MPP2 Silent p.T58T 0.42 TCGA-BF-A1Q0-01 17 43923759 43923759 T A SPPL2C Missense_Mutation p.M496K 0.68 tolerated(0.48) possibly_damaging(0.88) TCGA-BF-A1Q0-01 17 43923760 43923760 G T SPPL2C Missense_Mutation p.M496I 0.67 deleterious(0.02) possibly_damaging(0.493) TCGA-BF-A1Q0-01 17 4455280 4455280 G A MYBBP1A Silent p.F306F 0.26 TCGA-BF-A1Q0-01 17 4647960 4647960 C T ZMYND15 Missense_Mutation p.S575L 0.37 deleterious(0.01) possibly_damaging(0.687) TCGA-BF-A1Q0-01 17 46607066 46607066 C T HOXB1 Nonsense_Mutation p.W250* 0.64 TCGA-BF-A1Q0-01 17 46865189 46865189 G A TTLL6 Missense_Mutation p.R525W 0.38 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 17 47021290 47021290 G A SNF8 Silent p.A34A 0.26 TCGA-BF-A1Q0-01 17 47243560 47243560 G A B4GALNT2 Missense_Mutation p.E407K 0.24 tolerated(0.86) benign(0.009) TCGA-BF-A1Q0-01 17 47781575 47781575 G A SLC35B1 Missense_Mutation p.T181I 0.19 tolerated(0.09) benign(0.348) TCGA-BF-A1Q0-01 17 48545637 48545637 C T CHAD Missense_Mutation p.E180K 0.49 deleterious(0.04) benign(0.009) TCGA-BF-A1Q0-01 17 49710851 49710851 T G CA10 Missense_Mutation p.K317T 0.12 tolerated(0.09) benign(0.395) TCGA-BF-A1Q0-01 17 56400098 56400098 C T BZRAP1 Missense_Mutation p.G412R 0.51 tolerated(0.47) probably_damaging(0.922) TCGA-BF-A1Q0-01 17 61987500 61987500 G A CSHL1 Intron 0.20 TCGA-BF-A1Q0-01 17 67080433 67080433 C T ABCA6 Missense_Mutation p.G1442S 0.28 deleterious(0.03) possibly_damaging(0.718) TCGA-BF-A1Q0-01 17 7107071 7107071 G A DLG4 Missense_Mutation p.P135L 0.32 deleterious(0.02) benign(0.237) TCGA-BF-A1Q0-01 17 7107072 7107072 G A DLG4 Missense_Mutation p.P135S 0.32 tolerated(0.18) benign(0.243) TCGA-BF-A1Q0-01 17 72368703 72368703 G A GPR142 Missense_Mutation p.M451I 0.47 tolerated_low_confidence(0.2) benign(0) TCGA-BF-A1Q0-01 17 72926570 72926570 C T OTOP2 Silent p.T280T 0.44 TCGA-BF-A1Q0-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.68 deleterious(0) probably_damaging(0.982) TCGA-BF-A1Q0-01 17 7690336 7690336 C T DNAH2 Silent p.I2196I 0.27 TCGA-BF-A1Q0-01 17 77769887 77769887 C T CBX8 Missense_Mutation p.R72H 0.18 deleterious(0) probably_damaging(0.964) TCGA-BF-A1Q0-01 17 78073576 78073576 G A CCDC40 3'UTR 0.31 TCGA-BF-A1Q0-01 17 78337018 78337018 T C RNF213 Silent p.R3824R 0.75 TCGA-BF-A1Q0-01 17 7833879 7833879 G A TRAPPC1 3'UTR 0.46 TCGA-BF-A1Q0-01 17 79164543 79164543 G A AZI1 Silent p.F1001F 0.39 TCGA-BF-A1Q0-01 17 8132524 8132524 C T CTC1 Missense_Mutation p.G1053R 0.35 deleterious(0) probably_damaging(0.99) TCGA-BF-A1Q0-01 17 8216332 8216332 G A ARHGEF15 Missense_Mutation p.E232K 0.30 tolerated(0.09) benign(0.025) TCGA-BF-A1Q0-01 18 28711671 28711671 G A DSC1 Silent p.S791S 0.35 TCGA-BF-A1Q0-01 18 28906962 28906962 C T DSG1 Silent p.I70I 0.10 TCGA-BF-A1Q0-01 18 28989524 28989524 G A DSG4 Nonsense_Mutation p.W681* 0.23 TCGA-BF-A1Q0-01 18 31324745 31324745 G A ASXL3 Missense_Mutation p.E1645K 0.23 probably_damaging(0.997) TCGA-BF-A1Q0-01 18 42643219 42643219 C T SETBP1 Silent p.F1449F 0.36 TCGA-BF-A1Q0-01 18 52609926 52609926 C T CCDC68 Missense_Mutation p.E33K 0.11 deleterious(0) probably_damaging(0.939) TCGA-BF-A1Q0-01 18 53254312 53254312 C T TCF4 Silent p.T114T 0.13 TCGA-BF-A1Q0-01 18 59483638 59483638 C T RNF152 Missense_Mutation p.S20N 0.23 tolerated(0.59) probably_damaging(0.988) TCGA-BF-A1Q0-01 18 64218473 64218473 T A CDH19 Missense_Mutation p.K211N 0.34 tolerated(1) possibly_damaging(0.614) TCGA-BF-A1Q0-01 18 6873748 6873748 G A ARHGAP28 Missense_Mutation p.V237M 0.27 deleterious(0.04) possibly_damaging(0.513) TCGA-BF-A1Q0-01 19 1218458 1218458 C T STK11 Silent p.I111I 0.30 TCGA-BF-A1Q0-01 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.29 TCGA-BF-A1Q0-01 19 16006398 16006398 G A CYP4F2 Silent p.G87G 0.43 TCGA-BF-A1Q0-01 19 16060767 16060767 G A OR10H4 Silent p.%3D 0.40 TCGA-BF-A1Q0-01 19 16923560 16923560 C T NWD1 Intron 0.22 TCGA-BF-A1Q0-01 19 17160816 17160816 G A HAUS8 Missense_Mutation p.S367F 0.29 tolerated_low_confidence(0.76) benign(0) TCGA-BF-A1Q0-01 19 18186603 18186603 C T IL12RB1 Missense_Mutation p.G219E 0.17 tolerated(0.09) benign(0.086) TCGA-BF-A1Q0-01 19 18644121 18644121 G A FKBP8 Missense_Mutation p.P328S 0.42 tolerated(0.26) benign(0.084) TCGA-BF-A1Q0-01 19 22585597 22585597 G A ZNF98 Missense_Mutation p.P83S 0.13 tolerated(0.16) benign(0.118) TCGA-BF-A1Q0-01 19 22848033 22848033 C T ZNF492 Missense_Mutation p.S521F 0.44 deleterious(0.02) benign(0.135) TCGA-BF-A1Q0-01 19 23927533 23927533 T C ZNF681 Silent p.T273T 0.16 TCGA-BF-A1Q0-01 19 2933614 2933614 G A ZNF77 Missense_Mutation p.S504F 0.27 tolerated(0.06) benign(0.083) TCGA-BF-A1Q0-01 19 35941617 35941617 C T FFAR2 3'UTR 0.33 TCGA-BF-A1Q0-01 19 36333174 36333174 G T NPHS1 Missense_Mutation p.Q839K 0.12 deleterious(0.01) benign(0.155) TCGA-BF-A1Q0-01 19 40521320 40521320 C T ZNF546 Missense_Mutation p.H715Y 0.40 deleterious(0) benign(0.365) TCGA-BF-A1Q0-01 19 41198219 41198219 C T ADCK4 Silent p.Q452Q 0.13 TCGA-BF-A1Q0-01 19 41350627 41350627 G T CYP2A6 Missense_Mutation p.F404L 0.34 benign(0.034) TCGA-BF-A1Q0-01 19 43269712 43269712 G A PSG8 Missense_Mutation p.P8S 0.07 tolerated(0.17) benign(0.005) TCGA-BF-A1Q0-01 19 43430822 43430822 C T PSG7 Silent p.R252R 0.25 TCGA-BF-A1Q0-01 19 43522923 43522923 G A PSG11 Silent p.L236L 0.21 TCGA-BF-A1Q0-01 19 43998878 43998878 G A PHLDB3 Silent p.L375L 0.24 TCGA-BF-A1Q0-01 19 44661433 44661433 C T ZNF234 Missense_Mutation p.H422Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 19 44791848 44791848 G A ZNF235 Silent p.F580F 0.41 TCGA-BF-A1Q0-01 19 45855565 45855565 G A ERCC2 Nonsense_Mutation p.Q698* 0.14 TCGA-BF-A1Q0-01 19 48789857 48789857 C T ZNF114 Missense_Mutation p.H326Y 0.17 deleterious(0) benign(0.365) TCGA-BF-A1Q0-01 19 49963009 49963009 C T ALDH16A1 Nonsense_Mutation p.R135* 0.26 TCGA-BF-A1Q0-01 19 50040354 50040354 G A RCN3 Silent p.R170R 0.12 TCGA-BF-A1Q0-01 19 50150056 50150056 C T SCAF1 Silent p.P149P 0.35 TCGA-BF-A1Q0-01 19 50208012 50208012 C T CPT1C Missense_Mutation p.P247S 0.21 tolerated(0.24) benign(0.003) TCGA-BF-A1Q0-01 19 50216894 50216894 G A CPT1C 3'UTR 0.17 TCGA-BF-A1Q0-01 19 50387625 50387625 C T TBC1D17 Silent p.L414L 0.19 TCGA-BF-A1Q0-01 19 51022237 51022237 G A LRRC4B Missense_Mutation p.R245C 0.38 deleterious(0) probably_damaging(0.944) TCGA-BF-A1Q0-01 19 51363270 51363270 G A KLK3 Missense_Mutation p.G225S 0.23 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 19 52004616 52004616 C T SIGLEC12 Silent p.E124E 0.32 TCGA-BF-A1Q0-01 19 54312893 54312893 C T NLRP12 Missense_Mutation p.G674R 0.17 tolerated(0.4) benign(0.005) TCGA-BF-A1Q0-01 19 54314534 54314534 C T NLRP12 Missense_Mutation p.E127K 0.14 tolerated(0.98) benign(0.015) TCGA-BF-A1Q0-01 19 54783826 54783826 G A LILRB2 Missense_Mutation p.R59C 0.16 tolerated(0.19) benign(0.188) TCGA-BF-A1Q0-01 19 54818651 54818651 C T LILRA5 3'UTR 0.22 TCGA-BF-A1Q0-01 19 55086778 55086778 G A LILRA2 Silent p.G237G 0.19 TCGA-BF-A1Q0-01 19 55086779 55086779 G A LILRA2 Missense_Mutation p.E238K 0.19 tolerated(0.18) possibly_damaging(0.595) TCGA-BF-A1Q0-01 19 55221523 55221523 C T AC098784.2 3'Flank 0.29 TCGA-BF-A1Q0-01 19 56243688 56243688 G A NLRP9 Silent p.I503I 0.34 TCGA-BF-A1Q0-01 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.14 TCGA-BF-A1Q0-01 19 56459380 56459380 G A NLRP8 Missense_Mutation p.E38K 0.37 tolerated(0.29) benign(0.006) TCGA-BF-A1Q0-01 19 56515448 56515448 G A NLRP5 Silent p.R143R 0.20 TCGA-BF-A1Q0-01 19 56539262 56539262 G A NLRP5 Missense_Mutation p.G555R 0.18 tolerated(0.1) benign(0.384) TCGA-BF-A1Q0-01 19 56565166 56565166 G A NLRP5 Silent p.A1097A 0.21 TCGA-BF-A1Q0-01 19 57641395 57641395 A C USP29 Missense_Mutation p.N451T 0.18 deleterious(0.02) benign(0.157) TCGA-BF-A1Q0-01 19 58350416 58350416 C T ZNF587B Missense_Mutation p.A21V 0.15 tolerated(0.06) probably_damaging(1) TCGA-BF-A1Q0-01 19 58578489 58578489 C T ZNF135 Missense_Mutation p.P237S 0.46 tolerated(0.16) benign(0.114) TCGA-BF-A1Q0-01 19 7595243 7595243 C T MCOLN1 Silent p.F477F 0.10 TCGA-BF-A1Q0-01 19 7689196 7689196 C T XAB2 Missense_Mutation p.E320K 0.17 tolerated(0.51) benign(0.075) TCGA-BF-A1Q0-01 19 8586388 8586388 G A MYO1F 3'UTR 0.38 TCGA-BF-A1Q0-01 19 8841458 8841458 C T OR2Z1 Missense_Mutation p.S23L 0.14 tolerated(0.75) benign(0.004) TCGA-BF-A1Q0-01 19 8841468 8841468 C T OR2Z1 Silent p.L26L 0.22 TCGA-BF-A1Q0-01 19 9046505 9046505 G A MUC16 Missense_Mutation p.S11709F 0.13 benign(0.027) TCGA-BF-A1Q0-01 19 9046965 9046965 C T MUC16 Missense_Mutation p.D11556N 0.21 benign(0.007) TCGA-BF-A1Q0-01 19 9050038 9050038 G A MUC16 Silent p.F10531F 0.12 TCGA-BF-A1Q0-01 19 9068327 9068327 G A MUC16 Silent p.T6373T 0.28 TCGA-BF-A1Q0-01 1 100152699 100152699 G A PALMD Silent p.R156R 0.19 TCGA-BF-A1Q0-01 1 102312496 102312496 G A OLFM3 Intron 0.19 TCGA-BF-A1Q0-01 1 10684419 10684419 C - PEX14 Frame_Shift_Del p.A171Pfs*7 0.09 TCGA-BF-A1Q0-01 1 109714493 109714493 A G KIAA1324 Missense_Mutation p.K158R 0.08 tolerated(0.28) benign(0.007) TCGA-BF-A1Q0-01 1 114442839 114442839 G A AP4B1 Silent p.P267P 0.14 TCGA-BF-A1Q0-01 1 115168587 115168587 G A DENND2C Missense_Mutation p.R7C 0.20 deleterious(0.04) probably_damaging(1) TCGA-BF-A1Q0-01 1 12785497 12785497 T G AADACL3 Missense_Mutation p.F196C 0.28 tolerated(0.23) benign(0.004) TCGA-BF-A1Q0-01 1 12854208 12854208 C G PRAMEF1 Missense_Mutation p.H144Q 0.10 tolerated(0.8) possibly_damaging(0.719) TCGA-BF-A1Q0-01 1 12918976 12918976 C T PRAMEF2 Missense_Mutation p.P38S 0.11 tolerated(0.14) benign(0.049) TCGA-BF-A1Q0-01 1 12919929 12919929 G A PRAMEF2 Silent p.K223K 0.14 TCGA-BF-A1Q0-01 1 144916572 144916572 C T PDE4DIP Missense_Mutation p.E595K 0.18 deleterious(0) probably_damaging(0.99) TCGA-BF-A1Q0-01 1 145015874 145015874 G A RP11-326G21.1 5'Flank 0.12 TCGA-BF-A1Q0-01 1 147091993 147091993 C T BCL9 Missense_Mutation p.P678S 0.25 tolerated(0.18) benign(0.005) TCGA-BF-A1Q0-01 1 151262612 151262612 C A ZNF687 Missense_Mutation p.F993L 0.24 deleterious(0) probably_damaging(0.984) TCGA-BF-A1Q0-01 1 153005141 153005141 C T SPRR1B 3'UTR 0.24 TCGA-BF-A1Q0-01 1 153005142 153005142 C T SPRR1B 3'UTR 0.22 TCGA-BF-A1Q0-01 1 153122351 153122351 G A SPRR2G 3'UTR 0.34 TCGA-BF-A1Q0-01 1 154988846 154988846 C T ZBTB7B Silent p.C469C 0.35 TCGA-BF-A1Q0-01 1 156693162 156693162 G A ISG20L2 Silent p.A347A 0.24 TCGA-BF-A1Q0-01 1 157497543 157497543 C T FCRL5 Silent p.G608G 0.42 TCGA-BF-A1Q0-01 1 157773804 157773804 G A FCRL1 Silent p.F50F 0.29 TCGA-BF-A1Q0-01 1 158324454 158324454 C T CD1E Nonsense_Mutation p.Q116* 0.28 TCGA-BF-A1Q0-01 1 158325625 158325625 G A CD1E Missense_Mutation p.E212K 0.42 deleterious(0.02) benign(0.005) TCGA-BF-A1Q0-01 1 158590199 158590199 C T SPTA1 Missense_Mutation p.E2060K 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 1 158646001 158646001 G A SPTA1 Silent p.L348L 0.19 TCGA-BF-A1Q0-01 1 158911905 158911905 C T PYHIN1 Missense_Mutation p.H240Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-BF-A1Q0-01 1 161019118 161019118 C A ARHGAP30 Nonsense_Mutation p.E565* 0.19 TCGA-BF-A1Q0-01 1 163044355 163044355 C T RGS4 3'UTR 0.16 TCGA-BF-A1Q0-01 1 16577258 16577258 T C FBXO42 Silent p.E687E 0.21 TCGA-BF-A1Q0-01 1 166959028 166959028 G A MAEL Missense_Mutation p.A63T 0.26 tolerated(0.07) possibly_damaging(0.718) TCGA-BF-A1Q0-01 1 172538211 172538211 C T SUCO Missense_Mutation p.P262L 0.28 deleterious(0) benign(0.158) TCGA-BF-A1Q0-01 1 175087938 175087938 G A TNN Silent p.K876K 0.14 TCGA-BF-A1Q0-01 1 176664979 176664979 C T PAPPA2 Silent p.T910T 0.36 TCGA-BF-A1Q0-01 1 176838053 176838053 G A ASTN1 Missense_Mutation p.L1192F 0.10 tolerated(0.11) possibly_damaging(0.75) TCGA-BF-A1Q0-01 1 182787806 182787806 C T NPL Silent p.F196F 0.36 TCGA-BF-A1Q0-01 1 18808538 18808538 C T KLHDC7A Missense_Mutation p.P355S 0.25 tolerated(0.09) benign(0.01) TCGA-BF-A1Q0-01 1 19186034 19186034 G A TAS1R2 Missense_Mutation p.L41F 0.19 deleterious(0) probably_damaging(0.995) TCGA-BF-A1Q0-01 1 196295984 196295984 G A KCNT2 Silent p.A713A 0.14 TCGA-BF-A1Q0-01 1 197313541 197313541 C T CRB1 Silent p.L261L 0.32 TCGA-BF-A1Q0-01 1 197391011 197391011 G A CRB1 Missense_Mutation p.G685R 0.17 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 1 201009174 201009174 C T CACNA1S Missense_Mutation p.D1803N 0.09 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-BF-A1Q0-01 1 20474889 20474889 C T PLA2G2F Missense_Mutation p.P211S 0.22 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-BF-A1Q0-01 1 206619523 206619523 C T SRGAP2 Silent p.S573S 0.21 TCGA-BF-A1Q0-01 1 207812749 207812749 C T CR1 Missense_Mutation p.P2489S 0.42 deleterious_low_confidence(0) benign(0.004) TCGA-BF-A1Q0-01 1 207812750 207812750 C T CR1 Missense_Mutation p.P2489L 0.44 deleterious_low_confidence(0) benign(0) TCGA-BF-A1Q0-01 1 208383671 208383671 C T PLXNA2 Missense_Mutation p.G442D 0.19 tolerated(0.55) benign(0.009) TCGA-BF-A1Q0-01 1 210415269 210415269 C T SERTAD4 Missense_Mutation p.P220S 0.21 tolerated(1) benign(0) TCGA-BF-A1Q0-01 1 214813547 214813547 G C CENPF Missense_Mutation p.W622C 0.11 benign(0.04) TCGA-BF-A1Q0-01 1 215853584 215853584 A C USH2A Missense_Mutation p.S4067R 0.09 benign(0.311) TCGA-BF-A1Q0-01 1 226178949 226178949 G A SDE2 Silent p.C212C 0.21 TCGA-BF-A1Q0-01 1 228346248 228346248 A C GJC2 Missense_Mutation p.E263D 0.18 deleterious(0) probably_damaging(0.989) TCGA-BF-A1Q0-01 1 236739525 236739525 G C HEATR1 Missense_Mutation p.N1026K 0.22 deleterious(0.01) possibly_damaging(0.635) TCGA-BF-A1Q0-01 1 237778068 237778068 G A RYR2 Silent p.E1880E 0.12 TCGA-BF-A1Q0-01 1 23965716 23965716 C T MDS2 Missense_Mutation p.L41F 0.13 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-BF-A1Q0-01 1 240978044 240978044 G A RGS7 Missense_Mutation p.R273W 0.16 tolerated(0.15) probably_damaging(0.996) TCGA-BF-A1Q0-01 1 247588789 247588789 G A NLRP3 Missense_Mutation p.G682R 0.17 tolerated(0.22) benign(0.018) TCGA-BF-A1Q0-01 1 247902441 247902441 C T OR14K1 Silent p.F175F 0.27 TCGA-BF-A1Q0-01 1 248059688 248059688 C T OR2W3 Missense_Mutation p.S267F 0.42 deleterious(0.01) possibly_damaging(0.521) TCGA-BF-A1Q0-01 1 248309067 248309067 G A OR2M5 Missense_Mutation p.M206I 0.14 deleterious(0.02) probably_damaging(0.967) TCGA-BF-A1Q0-01 1 248790279 248790279 G A OR2T11 Missense_Mutation p.R51C 0.12 deleterious(0.03) possibly_damaging(0.507) TCGA-BF-A1Q0-01 1 26507371 26507371 C T CNKSR1 Missense_Mutation p.L126F 0.36 tolerated(0.9) probably_damaging(1) TCGA-BF-A1Q0-01 1 27217608 27217608 C T GPATCH3 Missense_Mutation p.E491K 0.39 deleterious(0.01) possibly_damaging(0.662) TCGA-BF-A1Q0-01 1 32740503 32740503 C T LCK Intron 0.21 TCGA-BF-A1Q0-01 1 3334463 3334463 C T PRDM16 Silent p.S921S 0.19 TCGA-BF-A1Q0-01 1 34164363 34164363 G A CSMD2 Silent p.P1265P 0.08 TCGA-BF-A1Q0-01 1 34164364 34164364 G A CSMD2 Missense_Mutation p.P1265L 0.08 deleterious(0) possibly_damaging(0.819) TCGA-BF-A1Q0-01 1 42049495 42049495 G A HIVEP3 Missense_Mutation p.S325F 0.12 benign(0.008) TCGA-BF-A1Q0-01 1 45292598 45292598 C T PTCH2 Missense_Mutation p.D891N 0.25 deleterious(0) probably_damaging(0.954) TCGA-BF-A1Q0-01 1 46093849 46093849 G A GPBP1L1 3'UTR 0.28 TCGA-BF-A1Q0-01 1 46871413 46871413 C T FAAH Silent p.F244F 0.22 TCGA-BF-A1Q0-01 1 54506432 54506432 G A TMEM59 Missense_Mutation p.S235F 0.13 deleterious(0) probably_damaging(0.995) TCGA-BF-A1Q0-01 1 55473941 55473941 G A BSND Silent p.L201L 0.10 TCGA-BF-A1Q0-01 1 57161680 57161680 C T PRKAA2 Silent p.L212L 0.11 TCGA-BF-A1Q0-01 1 62739653 62739653 C T KANK4 Missense_Mutation p.E375K 0.18 tolerated(0.14) possibly_damaging(0.624) TCGA-BF-A1Q0-01 1 6530406 6530406 C T PLEKHG5 Missense_Mutation p.E643K 0.15 deleterious(0.02) probably_damaging(0.953) TCGA-BF-A1Q0-01 1 66083825 66083825 C T LEPR Silent p.I797I 0.25 TCGA-BF-A1Q0-01 1 66087038 66087038 G A LEPR Missense_Mutation p.D832N 0.46 tolerated(0.29) benign(0.007) TCGA-BF-A1Q0-01 1 67292641 67292642 TG C WDR78 Frame_Shift_Del p.Q734Gfs*8 0.19 TCGA-BF-A1Q0-01 1 70503885 70503885 C T LRRC7 Missense_Mutation p.P755L 0.37 tolerated_low_confidence(0.08) benign(0.08) TCGA-BF-A1Q0-01 1 75684344 75684344 G A SLC44A5 Missense_Mutation p.P454S 0.12 tolerated(0.17) benign(0.006) TCGA-BF-A1Q0-01 1 76877767 76877767 T G ST6GALNAC3 Missense_Mutation p.N96K 0.19 benign(0.055) TCGA-BF-A1Q0-01 1 86814575 86814575 G A ODF2L 3'UTR 0.37 TCGA-BF-A1Q0-01 1 86961274 86961274 G A CLCA1 Missense_Mutation p.A677T 0.22 deleterious(0.02) possibly_damaging(0.871) TCGA-BF-A1Q0-01 1 898107 898107 C T KLHL17 Silent p.P284P 0.19 TCGA-BF-A1Q0-01 1 92528792 92528792 G A EPHX4 Silent p.V346V 0.21 TCGA-BF-A1Q0-01 1 94476861 94476861 G A ABCA4 Silent p.D1847D 0.11 TCGA-BF-A1Q0-01 1 94670672 94670672 A C ARHGAP29 Silent p.T214T 0.13 TCGA-BF-A1Q0-01 20 1424392 1424392 G A NSFL1C 3'UTR 0.21 TCGA-BF-A1Q0-01 20 1559046 1559046 C T RP4-576H24.4 Missense_Mutation p.R123Q 0.34 tolerated(1) benign(0.032) TCGA-BF-A1Q0-01 20 20208996 20208996 C T C20orf26 Missense_Mutation p.S679F 0.20 deleterious(0) probably_damaging(0.994) TCGA-BF-A1Q0-01 20 25187963 25187963 C G ENTPD6 Nonsense_Mutation p.Y102* 0.14 TCGA-BF-A1Q0-01 20 29961031 29961031 G A DEFB118 3'UTR 0.55 TCGA-BF-A1Q0-01 20 29965226 29965226 A G DEFB118 3'Flank 0.15 TCGA-BF-A1Q0-01 20 30345338 30345338 C T TPX2 Missense_Mutation p.S20L 0.15 tolerated(0.07) benign(0.006) TCGA-BF-A1Q0-01 20 31394046 31394046 C T DNMT3B Missense_Mutation p.S778L 0.22 deleterious(0.04) probably_damaging(0.974) TCGA-BF-A1Q0-01 20 31620830 31620830 G A BPIFB6 Silent p.K46K 0.19 TCGA-BF-A1Q0-01 20 32232470 32232470 C T CBFA2T2 3'UTR 0.38 TCGA-BF-A1Q0-01 20 32268156 32268156 C T E2F1 Missense_Mutation p.G110S 0.24 deleterious(0.03) possibly_damaging(0.573) TCGA-BF-A1Q0-01 20 33122618 33122618 C T DYNLRB1 Intron 0.16 TCGA-BF-A1Q0-01 20 40033135 40033135 G A CHD6 3'UTR 0.30 TCGA-BF-A1Q0-01 20 40730799 40730799 C T PTPRT Missense_Mutation p.E1227K 0.09 deleterious(0) possibly_damaging(0.67) TCGA-BF-A1Q0-01 20 42697310 42697310 C T TOX2 Missense_Mutation p.S502L 0.24 deleterious(0.04) probably_damaging(0.975) TCGA-BF-A1Q0-01 20 44207897 44207897 C T WFDC8 5'UTR 0.16 TCGA-BF-A1Q0-01 20 44236679 44236679 G A WFDC9 3'UTR 0.17 TCGA-BF-A1Q0-01 20 44567907 44567907 C T PCIF1 Missense_Mutation p.P60S 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-BF-A1Q0-01 20 44592254 44592254 G T ZNF335 Missense_Mutation p.P464H 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 20 44592255 44592255 G T ZNF335 Missense_Mutation p.P464T 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1Q0-01 20 46307506 46307506 G A SULF2 Silent p.I369I 0.34 TCGA-BF-A1Q0-01 20 47734876 47734876 C T STAU1 Missense_Mutation p.G395R 0.37 tolerated(0.05) benign(0.056) TCGA-BF-A1Q0-01 20 48522753 48522753 G A SPATA2 Silent p.A322A 0.23 TCGA-BF-A1Q0-01 20 49203734 49203734 A T FAM65C 3'UTR 0.14 TCGA-BF-A1Q0-01 20 49203735 49203735 C T FAM65C 3'UTR 0.13 TCGA-BF-A1Q0-01 20 51870456 51870456 G A TSHZ2 Silent p.R153R 0.17 TCGA-BF-A1Q0-01 20 52569994 52569994 G A BCAS1 Missense_Mutation p.L553F 0.24 tolerated(0.14) possibly_damaging(0.839) TCGA-BF-A1Q0-01 20 57782092 57782092 G A ZNF831 Silent p.Q1336Q 0.19 TCGA-BF-A1Q0-01 20 57876671 57876671 G A EDN3 Missense_Mutation p.G87R 0.43 tolerated(0.26) benign(0.038) TCGA-BF-A1Q0-01 20 57876672 57876672 G A EDN3 Missense_Mutation p.G87E 0.43 tolerated(0.1) benign(0.15) TCGA-BF-A1Q0-01 20 5843845 5843845 T G C20orf196 Silent p.S118S 0.11 TCGA-BF-A1Q0-01 20 58441356 58441356 C A SYCP2 Nonsense_Mutation p.E1438* 0.36 TCGA-BF-A1Q0-01 20 60903992 60903992 G A LAMA5 Missense_Mutation p.P1452L 0.16 benign(0.017) TCGA-BF-A1Q0-01 20 61512857 61512857 T G DIDO1 Missense_Mutation p.K1484T 0.16 possibly_damaging(0.776) TCGA-BF-A1Q0-01 20 61938855 61938855 C T COL20A1 Silent p.F170F 0.30 TCGA-BF-A1Q0-01 20 62162237 62162237 G A PTK6 Silent p.I292I 0.17 TCGA-BF-A1Q0-01 20 6759494 6759494 C T BMP2 Missense_Mutation p.P317S 0.16 deleterious(0) probably_damaging(0.99) TCGA-BF-A1Q0-01 20 9388582 9388582 G A PLCB4 Missense_Mutation p.D544N 0.17 deleterious(0.02) benign(0.234) TCGA-BF-A1Q0-01 20 9424845 9424845 G A PLCB4 Silent p.K933K 0.09 TCGA-BF-A1Q0-01 21 10908889 10908889 G A TPTE Missense_Mutation p.P486S 0.10 deleterious(0) probably_damaging(0.991) TCGA-BF-A1Q0-01 21 15599508 15599508 G A RBM11 Missense_Mutation p.R247Q 0.35 tolerated(0.06) benign(0.01) TCGA-BF-A1Q0-01 21 30925914 30925914 T C GRIK1 Missense_Mutation p.R907G 0.22 tolerated_low_confidence(0.19) benign(0.01) TCGA-BF-A1Q0-01 21 31023548 31023548 G A GRIK1 Silent p.L282L 0.38 TCGA-BF-A1Q0-01 21 40636394 40636394 A C BRWD1 Missense_Mutation p.V626G 0.28 tolerated(0.07) probably_damaging(0.966) TCGA-BF-A1Q0-01 21 43162041 43162041 C T RIPK4 Missense_Mutation p.G438S 0.33 tolerated(0.1) benign(0.008) TCGA-BF-A1Q0-01 21 43411272 43411272 G A ZBTB21 Missense_Mutation p.P978L 0.36 tolerated(0.08) benign(0.006) TCGA-BF-A1Q0-01 21 45538649 45538649 C T PWP2 Missense_Mutation p.S329L 0.26 deleterious(0) probably_damaging(0.911) TCGA-BF-A1Q0-01 22 17688149 17688149 G A CECR1 Silent p.I118I 0.46 TCGA-BF-A1Q0-01 22 22279998 22279998 A C PPM1F Missense_Mutation p.V310G 0.41 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 22 24034999 24034999 G A RGL4 Missense_Mutation p.G173R 0.54 tolerated(0.11) benign(0.432) TCGA-BF-A1Q0-01 22 24483564 24483564 C T CABIN1 Silent p.S1141S 0.23 TCGA-BF-A1Q0-01 22 25255730 25255730 G A SGSM1 Silent p.T283T 0.13 TCGA-BF-A1Q0-01 22 25264821 25264821 C T SGSM1 Silent p.F430F 0.28 TCGA-BF-A1Q0-01 22 29130443 29130443 G A CHEK2 Silent p.T89T 0.36 TCGA-BF-A1Q0-01 22 29957542 29957542 G A NIPSNAP1 Missense_Mutation p.P178S 0.24 tolerated(0.05) benign(0.299) TCGA-BF-A1Q0-01 22 30690047 30690047 G A TBC1D10A Missense_Mutation p.S260L 0.39 tolerated(0.23) benign(0.153) TCGA-BF-A1Q0-01 22 30899737 30899737 G A SEC14L4 Silent p.F19F 0.26 TCGA-BF-A1Q0-01 22 35478548 35478548 C T ISX Silent p.F89F 0.26 TCGA-BF-A1Q0-01 22 36537413 36537413 G A APOL3 Silent p.F348F 0.17 TCGA-BF-A1Q0-01 22 38121815 38121815 C T TRIOBP Silent p.P1084P 0.20 TCGA-BF-A1Q0-01 22 38151143 38151143 C T TRIOBP Silent p.S1841S 0.44 TCGA-BF-A1Q0-01 22 40425519 40425519 G A FAM83F Splice_Site p.X485_splice 0.23 TCGA-BF-A1Q0-01 2 103324903 103324903 G A SLC9A2 Silent p.S798S 0.18 TCGA-BF-A1Q0-01 2 108869811 108869811 C T SULT1C3 Silent p.F104F 0.21 TCGA-BF-A1Q0-01 2 113942615 113942615 G A PSD4 Missense_Mutation p.D380N 0.30 tolerated_low_confidence(0.17) benign(0.003) TCGA-BF-A1Q0-01 2 118732778 118732778 G A CCDC93 Nonsense_Mutation p.R246* 0.24 TCGA-BF-A1Q0-01 2 12863439 12863439 T C TRIB2 Silent p.S108S 0.67 TCGA-BF-A1Q0-01 2 132021015 132021015 G A POTEE Missense_Mutation p.D663N 0.22 deleterious_low_confidence(0) benign(0.341) TCGA-BF-A1Q0-01 2 141259425 141259425 G A LRP1B Missense_Mutation p.S2894L 0.32 possibly_damaging(0.637) TCGA-BF-A1Q0-01 2 149247902 149247902 C T MBD5 Silent p.I1334I 0.32 TCGA-BF-A1Q0-01 2 152300166 152300166 G A RIF1 Silent p.E643E 0.59 TCGA-BF-A1Q0-01 2 152319852 152319852 C T RIF1 Missense_Mutation p.S1273L 0.27 tolerated(0.1) benign(0.02) TCGA-BF-A1Q0-01 2 152404847 152404847 C T NEB Missense_Mutation p.R6711Q 0.54 possibly_damaging(0.902) TCGA-BF-A1Q0-01 2 166848514 166848514 C T SCN1A Silent p.G1757G 0.56 TCGA-BF-A1Q0-01 2 166848898 166848898 G A SCN1A Silent p.F1629F 0.57 TCGA-BF-A1Q0-01 2 168099458 168099458 G A XIRP2 Missense_Mutation p.S519N 0.18 benign(0.078) TCGA-BF-A1Q0-01 2 179552913 179552913 C T TTN Missense_Mutation p.E10746K 0.26 TCGA-BF-A1Q0-01 2 179596099 179596099 C T TTN Silent p.G5798G 0.29 TCGA-BF-A1Q0-01 2 179611340 179611340 C T TTN Intron 0.44 TCGA-BF-A1Q0-01 2 182780931 182780931 A G SSFA2 Missense_Mutation p.E855G 0.28 deleterious(0.02) possibly_damaging(0.575) TCGA-BF-A1Q0-01 2 183104841 183104841 C T PDE1A Missense_Mutation p.E132K 0.29 deleterious(0.01) possibly_damaging(0.883) TCGA-BF-A1Q0-01 2 186671662 186671662 G A FSIP2 Missense_Mutation p.E5966K 0.77 possibly_damaging(0.802) TCGA-BF-A1Q0-01 2 187692907 187692907 C T ZSWIM2 Missense_Mutation p.R569K 0.31 tolerated(0.43) benign(0.057) TCGA-BF-A1Q0-01 2 196851789 196851789 C T DNAH7 Splice_Site p.X585_splice 0.50 TCGA-BF-A1Q0-01 2 20173356 20173356 T C WDR35 Missense_Mutation p.N284D 0.59 deleterious(0.03) benign(0.312) TCGA-BF-A1Q0-01 2 210518038 210518038 C T MAP2 Silent p.F48F 0.45 TCGA-BF-A1Q0-01 2 21235361 21235361 G A APOB Missense_Mutation p.S1460F 0.29 benign(0.04) TCGA-BF-A1Q0-01 2 216246963 216246964 - CT FN1 Frame_Shift_Ins p.S1712Rfs*10 0.24 TCGA-BF-A1Q0-01 2 225666651 225666651 A C DOCK10 Missense_Mutation p.L1459V 0.42 deleterious(0.04) benign(0.064) TCGA-BF-A1Q0-01 2 231236359 231236359 G A SP140L Silent p.R210R 0.23 TCGA-BF-A1Q0-01 2 233273284 233273284 G A ALPPL2 Splice_Site p.X286_splice 0.24 TCGA-BF-A1Q0-01 2 234255480 234255480 G A SAG Silent p.E380E 0.14 TCGA-BF-A1Q0-01 2 238287312 238287312 C T COL6A3 Missense_Mutation p.G822R 0.25 probably_damaging(1) TCGA-BF-A1Q0-01 2 31595158 31595158 G A XDH Missense_Mutation p.P598S 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-BF-A1Q0-01 2 31610747 31610747 G A XDH Missense_Mutation p.S194F 0.71 deleterious(0.02) benign(0.128) TCGA-BF-A1Q0-01 2 32476336 32476336 G A NLRC4 Silent p.F199F 0.29 TCGA-BF-A1Q0-01 2 32712717 32712717 C T BIRC6 Missense_Mutation p.S2606L 0.24 benign(0.01) TCGA-BF-A1Q0-01 2 43625235 43625235 G A THADA Missense_Mutation p.R1368C 0.31 deleterious(0) probably_damaging(0.996) TCGA-BF-A1Q0-01 2 48807936 48807936 C T STON1-GTF2A1L Missense_Mutation p.S55F 0.30 tolerated(0.06) probably_damaging(0.979) TCGA-BF-A1Q0-01 2 48807961 48807961 C T STON1-GTF2A1L Silent p.S63S 0.33 TCGA-BF-A1Q0-01 2 74834339 74834339 C T M1AP Silent p.L146L 0.30 TCGA-BF-A1Q0-01 2 85769119 85769119 G T MAT2A Intron 0.55 TCGA-BF-A1Q0-01 2 90249191 90249191 G A IGKV1D-43 Silent p.Q49Q 0.26 TCGA-BF-A1Q0-01 3 101212726 101212726 G A SENP7 Silent p.L59L 0.25 TCGA-BF-A1Q0-01 3 102176628 102176628 C T ZPLD1 Silent p.S187S 0.22 TCGA-BF-A1Q0-01 3 108183613 108183613 C T MYH15 Missense_Mutation p.A555T 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1Q0-01 3 108351803 108351803 C T DZIP3 Missense_Mutation p.L234F 0.20 deleterious(0.03) benign(0.355) TCGA-BF-A1Q0-01 3 10975831 10975831 C T SLC6A11 Silent p.I518I 0.21 TCGA-BF-A1Q0-01 3 113374068 113374068 G A KIAA2018 Missense_Mutation p.S2154L 0.19 benign(0.424) TCGA-BF-A1Q0-01 3 120169561 120169561 C G FSTL1 Silent p.A11A 0.50 TCGA-BF-A1Q0-01 3 120876361 120876361 C T STXBP5L Missense_Mutation p.S255L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A1Q0-01 3 121208690 121208690 A T POLQ Missense_Mutation p.F1030I 0.26 tolerated_low_confidence(0.24) benign(0.118) TCGA-BF-A1Q0-01 3 121973162 121973162 T C CASR Silent p.F42F 0.55 TCGA-BF-A1Q0-01 3 124567289 124567289 G A ITGB5 Silent p.L160L 0.22 TCGA-BF-A1Q0-01 3 126180628 126180628 G A ZXDC Missense_Mutation p.A626V 0.10 deleterious(0.05) benign(0.293) TCGA-BF-A1Q0-01 3 128205201 128205201 G A GATA2 Silent p.T80T 0.25 TCGA-BF-A1Q0-01 3 130284128 130284128 G A COL6A6 Missense_Mutation p.E318K 0.13 tolerated(0.25) possibly_damaging(0.801) TCGA-BF-A1Q0-01 3 130715608 130715608 C T ATP2C1 Silent p.I771I 0.14 TCGA-BF-A1Q0-01 3 133497515 133497515 C T TF 3'UTR 0.33 TCGA-BF-A1Q0-01 3 13368735 13368735 C T NUP210 Missense_Mutation p.V1497I 0.29 tolerated(0.41) benign(0.004) TCGA-BF-A1Q0-01 3 134086519 134086519 G A AMOTL2 Silent p.S287S 0.36 TCGA-BF-A1Q0-01 3 134851843 134851843 C T EPHB1 Missense_Mutation p.P417S 0.28 tolerated(0.24) benign(0.192) TCGA-BF-A1Q0-01 3 138739223 138739223 C T PRR23B Missense_Mutation p.G94E 0.54 tolerated(0.64) probably_damaging(1) TCGA-BF-A1Q0-01 3 138763116 138763116 C T PRR23C Missense_Mutation p.G116D 0.56 tolerated(0.08) benign(0.066) TCGA-BF-A1Q0-01 3 140282839 140282839 C T CLSTN2 Missense_Mutation p.S840F 0.12 deleterious(0) benign(0.308) TCGA-BF-A1Q0-01 3 14799019 14799019 C T C3orf20 Silent p.D694D 0.10 TCGA-BF-A1Q0-01 3 149192792 149192792 C T TM4SF4 Missense_Mutation p.S43F 0.10 deleterious(0) probably_damaging(0.963) TCGA-BF-A1Q0-01 3 150845620 150845620 C T MED12L Silent p.I135I 0.34 TCGA-BF-A1Q0-01 3 154055716 154055716 C T GPR149 Silent p.R656R 0.23 TCGA-BF-A1Q0-01 3 159605586 159605586 G A IQCJ-SCHIP1 Silent p.K438K 0.19 TCGA-BF-A1Q0-01 3 164709985 164709985 G A SI Missense_Mutation p.R1655W 0.11 deleterious(0.02) probably_damaging(1) TCGA-BF-A1Q0-01 3 167031813 167031813 A C ZBBX Missense_Mutation p.L456V 0.32 deleterious(0.02) possibly_damaging(0.641) TCGA-BF-A1Q0-01 3 168861491 168861491 C T MECOM Missense_Mutation p.D45N 0.34 tolerated(0.05) probably_damaging(0.999) TCGA-BF-A1Q0-01 3 169656285 169656285 G A SAMD7 Missense_Mutation p.M444I 0.23 tolerated(0.25) benign(0.003) TCGA-BF-A1Q0-01 3 17300077 17300077 G A TBC1D5 Missense_Mutation p.P418S 0.55 deleterious(0.04) possibly_damaging(0.611) TCGA-BF-A1Q0-01 3 17349625 17349625 T C TBC1D5 Missense_Mutation p.R333G 0.53 deleterious(0) probably_damaging(0.992) TCGA-BF-A1Q0-01 3 178742749 178742749 T C ZMAT3 3'UTR 0.62 TCGA-BF-A1Q0-01 3 186445073 186445073 G A KNG1 Silent p.T204T 0.14 TCGA-BF-A1Q0-01 3 186980348 186980348 G A MASP1 Missense_Mutation p.A133V 0.38 deleterious(0.01) probably_damaging(0.933) TCGA-BF-A1Q0-01 3 194061932 194061932 G A CPN2 Silent p.R500R 0.43 TCGA-BF-A1Q0-01 3 24003915 24003915 T C NR1D2 Missense_Mutation p.F322S 0.29 tolerated(0.36) benign(0.014) TCGA-BF-A1Q0-01 3 367644 367644 C T CHL1 Nonsense_Mutation p.Q32* 0.21 TCGA-BF-A1Q0-01 3 38655513 38655513 C T SCN5A Missense_Mutation p.R219Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-BF-A1Q0-01 3 38793780 38793780 G A SCN10A Missense_Mutation p.S562F 0.13 deleterious(0.03) benign(0.11) TCGA-BF-A1Q0-01 3 38888407 38888407 C T SCN11A Silent p.K1718K 0.08 TCGA-BF-A1Q0-01 3 38889195 38889195 G A SCN11A Missense_Mutation p.P1456S 0.45 tolerated(0.43) benign(0.125) TCGA-BF-A1Q0-01 3 38988284 38988284 G A SCN11A Missense_Mutation p.H128Y 0.15 deleterious(0) benign(0.229) TCGA-BF-A1Q0-01 3 39225770 39225770 C T XIRP1 Missense_Mutation p.D1723N 0.26 deleterious(0.03) benign(0.025) TCGA-BF-A1Q0-01 3 39307161 39307161 C T CX3CR1 Silent p.T312T 0.33 TCGA-BF-A1Q0-01 3 41961305 41961305 G A ULK4 Missense_Mutation p.P183S 0.35 tolerated(0.16) possibly_damaging(0.524) TCGA-BF-A1Q0-01 3 46751281 46751281 G A TMIE 3'UTR 0.27 TCGA-BF-A1Q0-01 3 4716865 4716865 C G ITPR1 Missense_Mutation p.I889M 0.09 tolerated(0.21) benign(0.352) TCGA-BF-A1Q0-01 3 4829669 4829669 T G ITPR1 Missense_Mutation p.F2203L 0.12 deleterious(0.02) benign(0.016) TCGA-BF-A1Q0-01 3 48414292 48414292 G A FBXW12 Missense_Mutation p.R12Q 0.25 tolerated(0.16) benign(0.001) TCGA-BF-A1Q0-01 3 48659036 48659036 G A TMEM89 Silent p.L52L 0.26 TCGA-BF-A1Q0-01 3 49050863 49050863 C T WDR6 Silent p.F662F 0.13 TCGA-BF-A1Q0-01 3 51312577 51312577 G A DOCK3 Silent p.E872E 0.33 TCGA-BF-A1Q0-01 3 51411906 51411906 C T DOCK3 Missense_Mutation p.P1767L 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 3 51737762 51737762 G A TEX264 Silent p.T224T 0.54 TCGA-BF-A1Q0-01 3 52361988 52361988 C T DNAH1 Missense_Mutation p.P277S 0.32 possibly_damaging(0.907) TCGA-BF-A1Q0-01 3 54661864 54661864 G A CACNA2D3 Silent p.L338L 0.14 TCGA-BF-A1Q0-01 3 54905576 54905576 G A CACNA2D3 Missense_Mutation p.G546E 0.19 deleterious(0) probably_damaging(0.971) TCGA-BF-A1Q0-01 3 54930890 54930890 C T CACNA2D3 Silent p.F787F 0.09 TCGA-BF-A1Q0-01 3 56330239 56330239 C T ERC2 Silent p.Q294Q 0.19 TCGA-BF-A1Q0-01 3 62180762 62180762 C T PTPRG Silent p.P415P 0.47 TCGA-BF-A1Q0-01 3 63975917 63975917 C T ATXN7 Missense_Mutation p.S476F 0.15 deleterious(0.04) probably_damaging(0.986) TCGA-BF-A1Q0-01 3 66431917 66431917 C T LRIG1 Missense_Mutation p.G919E 0.15 tolerated(0.12) benign(0.111) TCGA-BF-A1Q0-01 3 68934370 68934370 C T FAM19A4 5'UTR 0.23 TCGA-BF-A1Q0-01 3 97467475 97467475 G A EPHA6 Missense_Mutation p.R1108Q 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-BF-A1Q0-01 3 98073124 98073124 C T OR5K4 Missense_Mutation p.R143W 0.17 tolerated(0.11) possibly_damaging(0.67) TCGA-BF-A1Q0-01 4 103459077 103459077 T G NFKB1 Silent p.S74S 0.37 TCGA-BF-A1Q0-01 4 104029996 104029996 G A CENPE Missense_Mutation p.R2659C 0.26 benign(0.015) TCGA-BF-A1Q0-01 4 10515113 10515113 G A CLNK Missense_Mutation p.P294L 0.18 deleterious(0.04) possibly_damaging(0.664) TCGA-BF-A1Q0-01 4 110791224 110791224 G A LRIT3 Missense_Mutation p.R440Q 0.15 tolerated(0.98) benign(0) TCGA-BF-A1Q0-01 4 110865147 110865147 A G EGF Missense_Mutation p.N220S 0.40 tolerated(0.89) benign(0) TCGA-BF-A1Q0-01 4 113353542 113353542 C T ALPK1 Missense_Mutation p.P947S 0.23 tolerated(0.47) benign(0.042) TCGA-BF-A1Q0-01 4 113353543 113353543 C T ALPK1 Missense_Mutation p.P947L 0.22 deleterious(0.03) benign(0.093) TCGA-BF-A1Q0-01 4 114279405 114279405 G A ANK2 Missense_Mutation p.E3211K 0.25 benign(0.018) TCGA-BF-A1Q0-01 4 114288909 114288909 C G ANK2 Silent p.L3740L 0.38 TCGA-BF-A1Q0-01 4 114823585 114823585 C T ARSJ Missense_Mutation p.G549R 0.19 deleterious(0.01) possibly_damaging(0.866) TCGA-BF-A1Q0-01 4 120107233 120107233 C T MYOZ2 Missense_Mutation p.P225S 0.23 tolerated(0.07) benign(0.395) TCGA-BF-A1Q0-01 4 126336764 126336764 C T FAT4 Missense_Mutation p.P2216S 0.14 benign(0.014) TCGA-BF-A1Q0-01 4 126402830 126402830 G A FAT4 Silent p.R4251R 0.23 TCGA-BF-A1Q0-01 4 141334224 141334224 G A CLGN Silent p.F3F 0.14 TCGA-BF-A1Q0-01 4 146560327 146560327 C T MMAA Silent p.F12F 0.09 TCGA-BF-A1Q0-01 4 15512933 15512933 G A CC2D2A Missense_Mutation p.E202K 0.44 deleterious(0.01) possibly_damaging(0.651) TCGA-BF-A1Q0-01 4 155507765 155507765 T A FGA Silent p.G272G 0.14 TCGA-BF-A1Q0-01 4 156135711 156135711 G A NPY2R Nonsense_Mutation p.W207* 0.35 TCGA-BF-A1Q0-01 4 156629388 156629388 G A GUCY1A3 Silent p.R106R 0.12 TCGA-BF-A1Q0-01 4 164246878 164246878 C T NPY1R Missense_Mutation p.M244I 0.12 tolerated(0.18) benign(0.091) TCGA-BF-A1Q0-01 4 165961536 165961536 G A TRIM60 Silent p.L104L 0.15 TCGA-BF-A1Q0-01 4 169327209 169327209 G A DDX60L Silent p.F1035F 0.17 TCGA-BF-A1Q0-01 4 173873285 173873285 C T GALNTL6 Missense_Mutation p.S416F 0.14 deleterious(0) possibly_damaging(0.541) TCGA-BF-A1Q0-01 4 175897101 175897101 C T ADAM29 Missense_Mutation p.S142F 0.29 deleterious(0) probably_damaging(0.998) TCGA-BF-A1Q0-01 4 175898916 175898916 C T ADAM29 Missense_Mutation p.P747L 0.19 tolerated(0.31) benign(0) TCGA-BF-A1Q0-01 4 187549677 187549677 G A FAT1 Missense_Mutation p.H1522Y 0.22 possibly_damaging(0.869) TCGA-BF-A1Q0-01 4 2306825 2306825 G A ZFYVE28 Silent p.A414A 0.11 TCGA-BF-A1Q0-01 4 23816050 23816050 G A PPARGC1A Silent p.S352S 0.11 TCGA-BF-A1Q0-01 4 25673336 25673336 C T SLC34A2 Silent p.I347I 0.38 TCGA-BF-A1Q0-01 4 38830970 38830970 C T TLR6 Missense_Mutation p.G42D 0.18 tolerated(0.3) benign(0.021) TCGA-BF-A1Q0-01 4 39301645 39301645 G C RFC1 Missense_Mutation p.A936G 0.25 deleterious(0) benign(0.175) TCGA-BF-A1Q0-01 4 40438601 40438601 G A RBM47 Missense_Mutation p.S396F 0.28 deleterious(0.02) possibly_damaging(0.603) TCGA-BF-A1Q0-01 4 68566789 68566789 A T UBA6 Missense_Mutation p.C17S 0.14 tolerated(0.44) benign(0.001) TCGA-BF-A1Q0-01 4 69188590 69188590 G A YTHDC1 Missense_Mutation p.P493L 0.14 deleterious(0.01) possibly_damaging(0.892) TCGA-BF-A1Q0-01 4 6925404 6925404 C T TBC1D14 Silent p.I96I 0.11 TCGA-BF-A1Q0-01 4 6925405 6925405 C T TBC1D14 Missense_Mutation p.P97S 0.11 tolerated_low_confidence(0.16) benign(0.007) TCGA-BF-A1Q0-01 4 69681842 69681842 G A UGT2B10 Nonsense_Mutation p.W35* 0.20 TCGA-BF-A1Q0-01 4 69962238 69962238 G A UGT2B7 5'UTR 0.20 TCGA-BF-A1Q0-01 4 69978270 69978270 G A UGT2B7 Missense_Mutation p.R469H 0.23 deleterious(0.03) benign(0.063) TCGA-BF-A1Q0-01 4 70920054 70920054 G A HTN1 Missense_Mutation p.E23K 0.43 tolerated_low_confidence(0.79) benign(0.025) TCGA-BF-A1Q0-01 4 72618257 72618257 G A GC Missense_Mutation p.P477L 0.12 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 4 73013163 73013163 C T NPFFR2 Silent p.Y401Y 0.47 TCGA-BF-A1Q0-01 4 73013193 73013193 C T NPFFR2 Silent p.I411I 0.32 TCGA-BF-A1Q0-01 4 74277830 74277830 T G ALB Missense_Mutation p.C277W 0.14 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 4 75673320 75673320 T G BTC Missense_Mutation p.E156D 0.08 deleterious(0.02) benign(0.27) TCGA-BF-A1Q0-01 4 77253640 77253640 C T CCDC158 Missense_Mutation p.D939N 0.41 tolerated(0.54) benign(0.068) TCGA-BF-A1Q0-01 4 79300992 79300992 C T FRAS1 Silent p.V1135V 0.11 TCGA-BF-A1Q0-01 4 79385217 79385217 G A FRAS1 Missense_Mutation p.R2269Q 0.24 benign(0.01) TCGA-BF-A1Q0-01 4 87115540 87115540 G A MAPK10 Silent p.F5F 0.22 TCGA-BF-A1Q0-01 4 95255745 95255745 C T HPGDS Silent p.R12R 0.13 TCGA-BF-A1Q0-01 5 10227684 10227684 G A FAM173B Missense_Mutation p.P191S 0.11 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 5 112178058 112178058 C T APC Missense_Mutation p.P2256L 0.43 benign(0.082) TCGA-BF-A1Q0-01 5 112769888 112769888 C T TSSK1B Missense_Mutation p.D217N 0.22 deleterious(0.02) benign(0.341) TCGA-BF-A1Q0-01 5 11364983 11364983 G T CTNND2 Nonsense_Mutation p.Y399* 0.16 TCGA-BF-A1Q0-01 5 115813769 115813769 G A SEMA6A Silent p.F503F 0.30 TCGA-BF-A1Q0-01 5 1213673 1213673 C T SLC6A19 Silent p.F253F 0.23 TCGA-BF-A1Q0-01 5 125816369 125816369 C T GRAMD3 Silent p.F250F 0.13 TCGA-BF-A1Q0-01 5 128977597 128977597 G A ADAMTS19 Missense_Mutation p.E600K 0.17 tolerated(0.15) benign(0.05) TCGA-BF-A1Q0-01 5 1344506 1344506 A C CLPTM1L Missense_Mutation p.L75V 0.37 tolerated(0.42) benign(0.063) TCGA-BF-A1Q0-01 5 134785074 134785074 G A TIFAB 3'UTR 0.59 TCGA-BF-A1Q0-01 5 135382100 135382100 G A TGFBI Silent p.T125T 0.29 TCGA-BF-A1Q0-01 5 135587547 135587547 C T TRPC7 Missense_Mutation p.E457K 0.18 deleterious(0) possibly_damaging(0.562) TCGA-BF-A1Q0-01 5 135692426 135692426 G A TRPC7 Missense_Mutation p.S217L 0.21 tolerated(0.08) possibly_damaging(0.745) TCGA-BF-A1Q0-01 5 137476450 137476450 G A BRD8 Missense_Mutation p.H1187Y 0.29 deleterious(0) possibly_damaging(0.703) TCGA-BF-A1Q0-01 5 137726914 137726914 C T KDM3B Silent p.S531S 0.28 TCGA-BF-A1Q0-01 5 13864563 13864563 G A DNAH5 Silent p.S1513S 0.43 TCGA-BF-A1Q0-01 5 13901548 13901548 G A DNAH5 Missense_Mutation p.P622L 0.24 possibly_damaging(0.908) TCGA-BF-A1Q0-01 5 140250010 140250010 C T PCDHA11 Missense_Mutation p.S441F 0.23 deleterious_low_confidence(0.04) benign(0.199) TCGA-BF-A1Q0-01 5 140264055 140264055 G A PCDHA13 Silent p.P734P 0.32 TCGA-BF-A1Q0-01 5 140347776 140347776 C T PCDHAC2 Silent p.S475S 0.21 TCGA-BF-A1Q0-01 5 140537685 140537685 C T PCDHB17 3'UTR 0.49 TCGA-BF-A1Q0-01 5 140736134 140736134 C T PCDHGA4 Missense_Mutation p.S456F 0.46 tolerated_low_confidence(0.06) benign(0.398) TCGA-BF-A1Q0-01 5 140750030 140750030 T C PCDHGB3 Silent p.S23S 0.22 TCGA-BF-A1Q0-01 5 141044616 141044616 G A ARAP3 Silent p.F891F 0.14 TCGA-BF-A1Q0-01 5 1441591 1441591 G A SLC6A3 Missense_Mutation p.P101S 0.15 deleterious(0) probably_damaging(0.994) TCGA-BF-A1Q0-01 5 147649650 147649650 C T SPINK13 Silent p.P5P 0.41 TCGA-BF-A1Q0-01 5 148206853 148206853 C T ADRB2 Silent p.I153I 0.44 TCGA-BF-A1Q0-01 5 149310691 149310691 G A PDE6A Missense_Mutation p.T253M 0.21 deleterious(0) probably_damaging(0.994) TCGA-BF-A1Q0-01 5 149513489 149513489 G C PDGFRB Missense_Mutation p.I238M 0.11 tolerated(0.22) benign(0.003) TCGA-BF-A1Q0-01 5 150112977 150112977 G A DCTN4 Missense_Mutation p.R164C 0.23 deleterious(0) probably_damaging(0.975) TCGA-BF-A1Q0-01 5 150275090 150275090 G A ZNF300 Missense_Mutation p.H587Y 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-BF-A1Q0-01 5 151235895 151235895 C T GLRA1 Missense_Mutation p.D176N 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-BF-A1Q0-01 5 156589674 156589674 G A FAM71B Silent p.I534I 0.19 TCGA-BF-A1Q0-01 5 16067520 16067520 C T MARCH11 3'UTR 0.14 TCGA-BF-A1Q0-01 5 167631593 167631593 C T TENM2 Missense_Mutation p.P1264L 0.20 deleterious(0.04) possibly_damaging(0.816) TCGA-BF-A1Q0-01 5 167687367 167687367 C T TENM2 Silent p.F2504F 0.29 TCGA-BF-A1Q0-01 5 167995759 167995759 G A PANK3 Silent p.D91D 0.19 TCGA-BF-A1Q0-01 5 168212958 168212958 C T SLIT3 Missense_Mutation p.E369K 0.18 deleterious(0.03) possibly_damaging(0.573) TCGA-BF-A1Q0-01 5 169186739 169186739 C T DOCK2 Silent p.L803L 0.25 TCGA-BF-A1Q0-01 5 169533060 169533060 G A FOXI1 Silent p.E33E 0.11 TCGA-BF-A1Q0-01 5 169535068 169535068 G A FOXI1 Nonsense_Mutation p.W197* 0.46 TCGA-BF-A1Q0-01 5 169661161 169661161 C T C5orf58 Missense_Mutation p.L8F 0.18 tolerated_low_confidence(0.24) benign(0) TCGA-BF-A1Q0-01 5 170145872 170145872 C T KCNIP1 Nonsense_Mutation p.R69* 0.28 TCGA-BF-A1Q0-01 5 172386879 172386879 G A RPL26L1 Translation_Start_Site p.M1? 0.40 deleterious(0.02) benign(0.025) TCGA-BF-A1Q0-01 5 172752981 172752981 C T STC2 Missense_Mutation p.D62N 0.31 deleterious(0) probably_damaging(0.971) TCGA-BF-A1Q0-01 5 176011422 176011422 G A CDHR2 Missense_Mutation p.G714S 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 5 177022360 177022360 C T TMED9 Silent p.I217I 0.33 TCGA-BF-A1Q0-01 5 177151321 177151321 C T FAM153A Missense_Mutation p.E272K 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.714) TCGA-BF-A1Q0-01 5 180036966 180036966 G A FLT4 Missense_Mutation p.S1249F 0.22 deleterious(0.02) benign(0.212) TCGA-BF-A1Q0-01 5 23522412 23522412 G A PRDM9 Splice_Site p.X170_splice 0.17 TCGA-BF-A1Q0-01 5 23527260 23527260 G A PRDM9 Missense_Mutation p.G688E 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-BF-A1Q0-01 5 26916004 26916004 C A CDH9 Missense_Mutation p.G86V 0.15 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 5 31267592 31267592 C T CDH6 Silent p.Y4Y 0.24 TCGA-BF-A1Q0-01 5 35763799 35763799 C T SPEF2 Missense_Mutation p.H1266Y 0.19 deleterious(0.01) benign(0.187) TCGA-BF-A1Q0-01 5 35873713 35873713 T G IL7R Missense_Mutation p.S223R 0.15 deleterious(0) probably_damaging(0.962) TCGA-BF-A1Q0-01 5 35875642 35875642 C T IL7R Missense_Mutation p.P277S 0.50 deleterious(0.04) probably_damaging(0.984) TCGA-BF-A1Q0-01 5 39381706 39381706 C T DAB2 Missense_Mutation p.D452N 0.20 deleterious(0.03) benign(0.411) TCGA-BF-A1Q0-01 5 41039586 41039586 G T MROH2B Missense_Mutation p.F675L 0.26 deleterious(0) benign(0.386) TCGA-BF-A1Q0-01 5 41149408 41149408 G A C6 Missense_Mutation p.S853L 0.43 deleterious(0) possibly_damaging(0.548) TCGA-BF-A1Q0-01 5 45267329 45267329 G A HCN1 Missense_Mutation p.R549C 0.16 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 5 58882290 58882290 A G PDE4D Intron 0.09 TCGA-BF-A1Q0-01 5 63871668 63871668 A C RGS7BP Missense_Mutation p.M134L 0.24 tolerated(0.14) unknown(0) TCGA-BF-A1Q0-01 5 64868010 64868010 C T PPWD1 Missense_Mutation p.S289L 0.20 deleterious(0) probably_damaging(0.99) TCGA-BF-A1Q0-01 5 6600246 6600246 G A NSUN2 Silent p.L699L 0.45 TCGA-BF-A1Q0-01 5 66480226 66480226 C T CD180 Missense_Mutation p.E149K 0.22 tolerated(0.66) benign(0.006) TCGA-BF-A1Q0-01 5 70308413 70308413 C T NAIP Silent p.T110T 0.18 TCGA-BF-A1Q0-01 5 75950773 75950773 G A IQGAP2 Silent p.V755V 0.18 TCGA-BF-A1Q0-01 5 79817891 79817891 C T FAM151B Missense_Mutation p.P202L 0.32 deleterious(0) probably_damaging(0.993) TCGA-BF-A1Q0-01 5 80366208 80366208 C T RASGRF2 Intron 0.35 TCGA-BF-A1Q0-01 5 82815664 82815664 C T VCAN Silent p.F513F 0.22 TCGA-BF-A1Q0-01 5 82835754 82835754 T G VCAN Missense_Mutation p.V2311G 0.13 deleterious(0.02) benign(0.001) TCGA-BF-A1Q0-01 5 92924011 92924011 C T NR2F1 Silent p.A284A 0.21 TCGA-BF-A1Q0-01 5 94863796 94863796 C G TTC37 Missense_Mutation p.C352S 0.27 tolerated(0.58) benign(0.101) TCGA-BF-A1Q0-01 5 95757642 95757642 C T PCSK1 Missense_Mutation p.D188N 0.20 deleterious(0.01) probably_damaging(1) TCGA-BF-A1Q0-01 6 106969113 106969113 G A AIM1 Missense_Mutation p.D936N 0.28 tolerated(0.72) benign(0.004) TCGA-BF-A1Q0-01 6 10912947 10912947 C T SYCP2L Silent p.I320I 0.16 TCGA-BF-A1Q0-01 6 117686903 117686903 C T ROS1 Silent p.G938G 0.46 TCGA-BF-A1Q0-01 6 119611861 119611861 A C MAN1A1 Missense_Mutation p.L295R 0.25 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 6 127768485 127768485 C T KIAA0408 Missense_Mutation p.E327K 0.41 tolerated(0.06) benign(0.112) TCGA-BF-A1Q0-01 6 127796649 127796649 G A SOGA3 Missense_Mutation p.T841I 0.50 tolerated(0.12) benign(0.244) TCGA-BF-A1Q0-01 6 130761889 130761889 G A TMEM200A Missense_Mutation p.E108K 0.17 tolerated(0.71) benign(0.001) TCGA-BF-A1Q0-01 6 136935337 136935337 C T MAP3K5 Silent p.E746E 0.30 TCGA-BF-A1Q0-01 6 142519717 142519717 C T VTA1 Missense_Mutation p.P221L 0.21 tolerated(0.15) possibly_damaging(0.591) TCGA-BF-A1Q0-01 6 150569890 150569890 C T PPP1R14C Silent p.I144I 0.20 TCGA-BF-A1Q0-01 6 152786512 152786513 - CA SYNE1 Frame_Shift_Ins p.R605* 0.13 TCGA-BF-A1Q0-01 6 159458043 159458043 T C TAGAP Missense_Mutation p.T338A 0.14 tolerated(0.76) benign(0.001) TCGA-BF-A1Q0-01 6 159458044 159458044 G T TAGAP Silent p.A337A 0.15 TCGA-BF-A1Q0-01 6 159651016 159651016 C T FNDC1 Silent p.F450F 0.20 TCGA-BF-A1Q0-01 6 159654273 159654273 G A FNDC1 Missense_Mutation p.R910K 0.25 deleterious_low_confidence(0.05) unknown(0) TCGA-BF-A1Q0-01 6 160212136 160212136 C T MRPL18 Missense_Mutation p.P73S 0.19 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 6 160932074 160932074 C T LPAL2 5'Flank 0.45 TCGA-BF-A1Q0-01 6 160962176 160962176 G A LPA Missense_Mutation p.P1853S 0.25 deleterious(0.01) benign(0.135) TCGA-BF-A1Q0-01 6 162394449 162394449 C T PARK2 Missense_Mutation p.E207K 0.24 deleterious(0.04) benign(0.194) TCGA-BF-A1Q0-01 6 168297634 168297634 G A MLLT4 Silent p.L433L 0.11 TCGA-BF-A1Q0-01 6 170592513 170592513 C T DLL1 Silent p.K618K 0.22 TCGA-BF-A1Q0-01 6 25923937 25923937 C T SLC17A2 Missense_Mutation p.E76K 0.40 tolerated(0.21) benign(0.005) TCGA-BF-A1Q0-01 6 26271219 26271219 G A HIST1H3G Missense_Mutation p.R132C 0.11 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-BF-A1Q0-01 6 28294168 28294168 G A ZSCAN31 Silent p.F332F 0.21 TCGA-BF-A1Q0-01 6 28539813 28539813 T C SCAND3 Missense_Mutation p.S1285G 0.30 tolerated_low_confidence(0.08) probably_damaging(0.95) TCGA-BF-A1Q0-01 6 29794797 29794797 G A HLA-G 5'UTR 0.32 TCGA-BF-A1Q0-01 6 30037086 30037086 C T PPP1R11 3'UTR 0.10 TCGA-BF-A1Q0-01 6 31079247 31079247 G A C6orf15 Missense_Mutation p.P297S 0.30 deleterious(0.02) probably_damaging(0.932) TCGA-BF-A1Q0-01 6 32083517 32083517 C A ATF6B Nonstop_Mutation p.*704Lext*8 0.16 TCGA-BF-A1Q0-01 6 34512073 34512073 C T SPDEF Missense_Mutation p.G54S 0.10 tolerated_low_confidence(0.46) possibly_damaging(0.858) TCGA-BF-A1Q0-01 6 36976697 36976697 G A FGD2 Silent p.R52R 0.26 TCGA-BF-A1Q0-01 6 39162039 39162039 G A KCNK5 Silent p.F180F 0.22 TCGA-BF-A1Q0-01 6 42931084 42931084 G A GNMT Missense_Mutation p.V205I 0.38 tolerated(1) benign(0) TCGA-BF-A1Q0-01 6 52051240 52051240 G A IL17A Missense_Mutation p.G4E 0.17 tolerated_low_confidence(0.26) benign(0.052) TCGA-BF-A1Q0-01 6 53986346 53986346 C T MLIP Silent p.F55F 0.16 TCGA-BF-A1Q0-01 6 7231105 7231105 C T RREB1 Silent p.L925L 0.26 TCGA-BF-A1Q0-01 6 7373880 7373880 T C CAGE1 Missense_Mutation p.N391S 0.45 tolerated(0.2) benign(0.051) TCGA-BF-A1Q0-01 6 7580752 7580752 G A DSP Silent p.R1443R 0.11 TCGA-BF-A1Q0-01 6 7583465 7583465 C T DSP Silent p.T1990T 0.18 TCGA-BF-A1Q0-01 6 80744798 80744798 G A TTK Missense_Mutation p.E571K 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 6 84883856 84883856 C T KIAA1009 Missense_Mutation p.E693K 0.63 deleterious(0.04) possibly_damaging(0.731) TCGA-BF-A1Q0-01 6 85446592 85446592 C T TBX18 Silent p.E545E 0.27 TCGA-BF-A1Q0-01 6 86324795 86324795 G A SYNCRIP Silent p.P517P 0.39 TCGA-BF-A1Q0-01 6 89479524 89479524 G A RNGTT Missense_Mutation p.R470C 0.29 deleterious(0) probably_damaging(0.943) TCGA-BF-A1Q0-01 6 96651968 96651968 C T FUT9 Missense_Mutation p.L313F 0.22 tolerated(0.06) possibly_damaging(0.707) TCGA-BF-A1Q0-01 7 100681346 100681346 G A MUC17 Missense_Mutation p.E2217K 0.18 unknown(0) TCGA-BF-A1Q0-01 7 100855624 100855624 G A PLOD3 Missense_Mutation p.S346F 0.16 tolerated(1) benign(0) TCGA-BF-A1Q0-01 7 102883456 102883456 A C DPY19L2P2 RNA 0.10 TCGA-BF-A1Q0-01 7 107746344 107746344 C T LAMB4 Missense_Mutation p.G263E 0.13 deleterious(0.01) possibly_damaging(0.682) TCGA-BF-A1Q0-01 7 128496603 128496603 C T FLNC Missense_Mutation p.S2428F 0.12 tolerated(0.87) probably_damaging(1) TCGA-BF-A1Q0-01 7 132192379 132192379 G A PLXNA4 Silent p.F358F 0.13 TCGA-BF-A1Q0-01 7 133943049 133943049 C T LRGUK Missense_Mutation p.R747W 0.39 deleterious(0.02) benign(0.394) TCGA-BF-A1Q0-01 7 137257540 137257540 G A DGKI Silent p.F602F 0.50 TCGA-BF-A1Q0-01 7 138596002 138596002 G A KIAA1549 Missense_Mutation p.S1012F 0.59 deleterious(0) probably_damaging(0.999) TCGA-BF-A1Q0-01 7 141490228 141490228 G A TAS2R5 Missense_Mutation p.G23R 0.52 tolerated(0.1) benign(0.117) TCGA-BF-A1Q0-01 7 141955469 141955469 T C PRSS58 Missense_Mutation p.Y22C 0.11 deleterious(0.02) possibly_damaging(0.903) TCGA-BF-A1Q0-01 7 142180675 142180675 G A TRBV6-5 Silent p.L62L 0.15 TCGA-BF-A1Q0-01 7 142569526 142569526 C T TRPV6 Silent p.R704R 0.14 TCGA-BF-A1Q0-01 7 143080209 143080209 T G ZYX Missense_Mutation p.F273V 0.05 tolerated(0.19) probably_damaging(0.996) TCGA-BF-A1Q0-01 7 143141025 143141025 C T TAS2R60 Silent p.F160F 0.50 TCGA-BF-A1Q0-01 7 143141106 143141106 C T TAS2R60 Silent p.S187S 0.08 TCGA-BF-A1Q0-01 7 144015625 144015625 C T OR2A1 Silent p.T136T 0.19 TCGA-BF-A1Q0-01 7 148802118 148802118 G A ZNF425 Missense_Mutation p.T282I 0.31 deleterious(0.03) possibly_damaging(0.703) TCGA-BF-A1Q0-01 7 150027541 150027541 G A ZBED6CL Silent p.V16V 0.09 TCGA-BF-A1Q0-01 7 150217799 150217799 A C GIMAP7 Missense_Mutation p.K246T 0.20 deleterious(0.02) possibly_damaging(0.641) TCGA-BF-A1Q0-01 7 150269501 150269501 C T GIMAP4 Missense_Mutation p.H115Y 0.15 deleterious(0.02) probably_damaging(1) TCGA-BF-A1Q0-01 7 150764051 150764051 C T SLC4A2 Nonsense_Mutation p.R313* 0.52 TCGA-BF-A1Q0-01 7 150878530 150878530 G A ASB10 Silent p.L200L 0.18 TCGA-BF-A1Q0-01 7 153584808 153584808 G A DPP6 Missense_Mutation p.G14R 0.10 tolerated(0.52) benign(0.001) TCGA-BF-A1Q0-01 7 156974866 156974866 C T UBE3C Missense_Mutation p.H279Y 0.27 tolerated(0.58) benign(0.007) TCGA-BF-A1Q0-01 7 18066874 18066874 C G PRPS1L1 Missense_Mutation p.V178L 0.39 deleterious(0.01) benign(0.035) TCGA-BF-A1Q0-01 7 18801862 18801862 C T HDAC9 Missense_Mutation p.P709L 0.50 deleterious(0) possibly_damaging(0.839) TCGA-BF-A1Q0-01 7 28534569 28534569 G A CREB5 Missense_Mutation p.E41K 0.35 deleterious(0) probably_damaging(0.993) TCGA-BF-A1Q0-01 7 30695256 30695256 C T CRHR2 Silent p.G358G 0.11 TCGA-BF-A1Q0-01 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.49 tolerated(0.19) benign(0.198) TCGA-BF-A1Q0-01 7 31617479 31617479 C T CCDC129 Missense_Mutation p.R227C 0.14 deleterious(0.04) benign(0.168) TCGA-BF-A1Q0-01 7 43548571 43548571 G A HECW1 Silent p.L1290L 0.27 TCGA-BF-A1Q0-01 7 44189372 44189372 G A GCK Silent p.V223V 0.37 TCGA-BF-A1Q0-01 7 45725619 45725619 C T ADCY1 Missense_Mutation p.S711L 0.48 tolerated(0.23) benign(0.001) TCGA-BF-A1Q0-01 7 47944918 47944918 G A PKD1L1 Silent p.V509V 0.54 TCGA-BF-A1Q0-01 7 4917258 4917258 C T RADIL Silent p.K171K 0.40 TCGA-BF-A1Q0-01 7 71175784 71175784 T C WBSCR17 Silent p.G513G 0.23 TCGA-BF-A1Q0-01 7 77807405 77807405 C T MAGI2 Missense_Mutation p.E776K 0.67 deleterious(0) benign(0.285) TCGA-BF-A1Q0-01 7 82763754 82763754 C T PCLO Missense_Mutation p.A1038T 0.35 unknown(0) TCGA-BF-A1Q0-01 7 82763956 82763956 A C PCLO Silent p.P970P 0.11 TCGA-BF-A1Q0-01 7 88965207 88965207 G A ZNF804B Missense_Mutation p.G971S 0.43 tolerated(0.68) benign(0.015) TCGA-BF-A1Q0-01 7 92099170 92099170 G T ERVW-1 Missense_Mutation p.H176N 0.25 tolerated(1) benign(0.005) TCGA-BF-A1Q0-01 7 92731165 92731165 G A SAMD9 Nonsense_Mutation p.R1416* 0.09 TCGA-BF-A1Q0-01 7 92735364 92735364 T A SAMD9 Missense_Mutation p.K16I 0.20 tolerated(0.06) benign(0.099) TCGA-BF-A1Q0-01 7 94038674 94038674 C T COL1A2 Missense_Mutation p.P278L 0.44 unknown(0) TCGA-BF-A1Q0-01 7 97487649 97487649 G A ASNS Missense_Mutation p.P282S 0.19 tolerated(0.09) benign(0.079) TCGA-BF-A1Q0-01 8 100796656 100796656 G A VPS13B Silent p.A2656A 0.23 TCGA-BF-A1Q0-01 8 10470537 10470537 G A RP1L1 Silent p.P357P 0.26 TCGA-BF-A1Q0-01 8 10470595 10470595 A T RP1L1 Missense_Mutation p.L338Q 0.43 possibly_damaging(0.569) TCGA-BF-A1Q0-01 8 104948865 104948865 G A RIMS2 Missense_Mutation p.R821Q 0.25 tolerated_low_confidence(0.07) benign(0.396) TCGA-BF-A1Q0-01 8 105368372 105368372 C T DCSTAMP Silent p.V453V 0.18 TCGA-BF-A1Q0-01 8 105463544 105463544 C T DPYS Missense_Mutation p.R118Q 0.33 deleterious(0.04) possibly_damaging(0.731) TCGA-BF-A1Q0-01 8 10583632 10583632 G A SOX7 Silent p.A313A 0.36 TCGA-BF-A1Q0-01 8 109489041 109489041 C T EMC2 Missense_Mutation p.L208F 0.21 deleterious(0.01) possibly_damaging(0.482) TCGA-BF-A1Q0-01 8 110100443 110100443 G A TRHR Nonsense_Mutation p.W234* 0.38 TCGA-BF-A1Q0-01 8 11301725 11301725 C T FAM167A Missense_Mutation p.E66K 0.12 tolerated(0.4) benign(0.115) TCGA-BF-A1Q0-01 8 117862909 117862909 G T RAD21 Missense_Mutation p.P523Q 0.08 tolerated(0.15) benign(0.11) TCGA-BF-A1Q0-01 8 120569736 120569736 G C ENPP2 3'UTR 0.11 TCGA-BF-A1Q0-01 8 121357718 121357718 C T COL14A1 Missense_Mutation p.P1665S 0.29 tolerated(0.07) probably_damaging(1) TCGA-BF-A1Q0-01 8 124787428 124787428 C T FAM91A1 Silent p.L67L 0.11 TCGA-BF-A1Q0-01 8 124818335 124818335 A T FAM91A1 Missense_Mutation p.N633I 0.12 tolerated(0.15) benign(0.142) TCGA-BF-A1Q0-01 8 124987451 124987451 C T FER1L6 Silent p.T196T 0.32 TCGA-BF-A1Q0-01 8 126021462 126021462 C T SQLE Missense_Mutation p.P329S 0.19 tolerated(0.11) benign(0.077) TCGA-BF-A1Q0-01 8 126448703 126448703 T C TRIB1 Missense_Mutation p.F370S 0.38 tolerated(0.08) benign(0.3) TCGA-BF-A1Q0-01 8 133153407 133153407 C T KCNQ3 Missense_Mutation p.M478I 0.27 tolerated(0.74) possibly_damaging(0.831) TCGA-BF-A1Q0-01 8 133184869 133184869 C T KCNQ3 Silent p.R372R 0.07 TCGA-BF-A1Q0-01 8 135614365 135614365 C T ZFAT Missense_Mutation p.E533K 0.31 tolerated(0.46) benign(0.073) TCGA-BF-A1Q0-01 8 139164878 139164878 C T FAM135B Missense_Mutation p.E614K 0.11 deleterious(0.03) possibly_damaging(0.627) TCGA-BF-A1Q0-01 8 141566090 141566090 G A AGO2 Missense_Mutation p.P392S 0.33 deleterious(0.05) benign(0.021) TCGA-BF-A1Q0-01 8 145114770 145114770 C T OPLAH Missense_Mutation p.E56K 0.10 deleterious(0.04) benign(0.314) TCGA-BF-A1Q0-01 8 145580326 145580326 G A FBXL6 Silent p.I309I 0.10 TCGA-BF-A1Q0-01 8 145659433 145659433 G A TONSL Silent p.L1105L 0.34 TCGA-BF-A1Q0-01 8 1497688 1497688 T C DLGAP2 Silent p.L277L 0.45 TCGA-BF-A1Q0-01 8 17157596 17157596 C T MTMR7 Missense_Mutation p.M586I 0.35 tolerated(0.35) benign(0) TCGA-BF-A1Q0-01 8 19276199 19276199 G A CSGALNACT1 Missense_Mutation p.H399Y 0.32 tolerated(0.25) possibly_damaging(0.485) TCGA-BF-A1Q0-01 8 19681483 19681483 C T INTS10 Missense_Mutation p.P255L 0.14 tolerated(0.18) possibly_damaging(0.888) TCGA-BF-A1Q0-01 8 22458470 22458470 C T C8orf58 Missense_Mutation p.A39V 0.09 tolerated(0.16) benign(0.024) TCGA-BF-A1Q0-01 8 22995328 22995328 C T TNFRSF10D 3'UTR 0.09 TCGA-BF-A1Q0-01 8 23059404 23059404 C T TNFRSF10A Silent p.T182T 0.28 TCGA-BF-A1Q0-01 8 27922130 27922130 G A NUGGC Missense_Mutation p.P277L 0.29 deleterious(0) probably_damaging(0.941) TCGA-BF-A1Q0-01 8 2815330 2815330 C T CSMD1 Splice_Site p.X3235_splice 0.38 TCGA-BF-A1Q0-01 8 2944738 2944738 C T CSMD1 Missense_Mutation p.G2452E 0.10 probably_damaging(1) TCGA-BF-A1Q0-01 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.11 tolerated(1) benign(0.002) TCGA-BF-A1Q0-01 8 35541129 35541129 C T UNC5D Missense_Mutation p.A212V 0.09 tolerated(0.38) possibly_damaging(0.698) TCGA-BF-A1Q0-01 8 35606138 35606138 C T UNC5D Silent p.I620I 0.11 TCGA-BF-A1Q0-01 8 40554818 40554818 G A ZMAT4 Missense_Mutation p.H99Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-BF-A1Q0-01 8 41166145 41166145 G A SFRP1 Silent p.S178S 0.64 TCGA-BF-A1Q0-01 8 42178259 42178259 G A IKBKB Missense_Mutation p.E529K 0.40 tolerated(0.28) benign(0.001) TCGA-BF-A1Q0-01 8 62370879 62370879 G A CLVS1 Missense_Mutation p.G252E 0.32 deleterious(0) probably_damaging(0.996) TCGA-BF-A1Q0-01 8 67976615 67976615 C T CSPP1 5'UTR 0.29 TCGA-BF-A1Q0-01 8 73479955 73479955 T G KCNB2 5'UTR 0.32 TCGA-BF-A1Q0-01 8 73848248 73848248 G A KCNB2 Missense_Mutation p.E220K 0.19 tolerated(0.84) benign(0.004) TCGA-BF-A1Q0-01 8 73849053 73849053 C T KCNB2 Missense_Mutation p.S488L 0.12 deleterious(0) probably_damaging(0.975) TCGA-BF-A1Q0-01 8 73979573 73979573 C T SBSPON 3'UTR 0.27 TCGA-BF-A1Q0-01 8 75227805 75227805 G A JPH1 Missense_Mutation p.R144C 0.15 deleterious(0) probably_damaging(0.996) TCGA-BF-A1Q0-01 8 75227821 75227821 C T JPH1 Silent p.R138R 0.30 TCGA-BF-A1Q0-01 8 77616627 77616627 A C ZFHX4 Missense_Mutation p.N102H 0.08 possibly_damaging(0.844) TCGA-BF-A1Q0-01 8 77766705 77766705 C T ZFHX4 Silent p.F2516F 0.06 TCGA-BF-A1Q0-01 8 8185578 8185578 C T SGK223 Missense_Mutation p.S905N 0.21 probably_damaging(0.968) TCGA-BF-A1Q0-01 8 82196159 82196159 G A FABP5 Missense_Mutation p.G102R 0.17 deleterious(0.01) possibly_damaging(0.717) TCGA-BF-A1Q0-01 8 91072436 91072436 C T CALB1 Missense_Mutation p.D251N 0.12 deleterious(0) benign(0.12) TCGA-BF-A1Q0-01 8 95201472 95201472 C T CDH17 Silent p.L31L 0.21 TCGA-BF-A1Q0-01 9 100116955 100116955 T C CCDC180 Missense_Mutation p.M1080T 0.26 deleterious(0) benign(0.092) TCGA-BF-A1Q0-01 9 100693459 100693459 C T HEMGN Missense_Mutation p.R73Q 0.46 tolerated(1) benign(0) TCGA-BF-A1Q0-01 9 101907069 101907069 G A TGFBR1 Silent p.K343K 0.30 TCGA-BF-A1Q0-01 9 104124732 104124732 G A BAAT Missense_Mutation p.P412L 0.23 deleterious(0.03) benign(0.376) TCGA-BF-A1Q0-01 9 107267237 107267237 G A OR13F1 Missense_Mutation p.E232K 0.25 deleterious(0.03) benign(0.186) TCGA-BF-A1Q0-01 9 107331487 107331487 C T OR13C8 Silent p.F13F 0.22 TCGA-BF-A1Q0-01 9 107367329 107367329 C T OR13C2 Missense_Mutation p.D194N 0.18 deleterious(0.03) benign(0.004) TCGA-BF-A1Q0-01 9 107367383 107367383 G A OR13C2 Missense_Mutation p.H176Y 0.24 deleterious(0.03) possibly_damaging(0.807) TCGA-BF-A1Q0-01 9 113196679 113196679 C T SVEP1 Missense_Mutation p.G1666R 0.36 probably_damaging(0.998) TCGA-BF-A1Q0-01 9 113205880 113205880 G A SVEP1 Silent p.I1528I 0.34 TCGA-BF-A1Q0-01 9 114449059 114449059 C T C9orf84 Silent p.R1442R 0.20 TCGA-BF-A1Q0-01 9 114454514 114454514 G A C9orf84 Missense_Mutation p.S1184L 0.14 deleterious(0.01) possibly_damaging(0.892) TCGA-BF-A1Q0-01 9 116811415 116811415 C T ZNF618 Silent p.I518I 0.25 TCGA-BF-A1Q0-01 9 116812003 116812003 C T ZNF618 Silent p.I714I 0.22 TCGA-BF-A1Q0-01 9 119094741 119094741 G A PAPPA Missense_Mutation p.D1131N 0.15 tolerated(0.18) possibly_damaging(0.555) TCGA-BF-A1Q0-01 9 119567924 119567924 G A ASTN2 Nonsense_Mutation p.Q744* 0.23 TCGA-BF-A1Q0-01 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.19 tolerated(0.12) benign(0.004) TCGA-BF-A1Q0-01 9 125329898 125329898 G A OR1L8 Missense_Mutation p.P287S 0.22 deleterious(0) possibly_damaging(0.786) TCGA-BF-A1Q0-01 9 12821469 12821469 G A LURAP1L Missense_Mutation p.E133K 0.47 deleterious(0) probably_damaging(0.998) TCGA-BF-A1Q0-01 9 130540867 130540867 C T SH2D3C Intron 0.13 TCGA-BF-A1Q0-01 9 130674570 130674570 G A ST6GALNAC4 Silent p.F196F 0.32 TCGA-BF-A1Q0-01 9 131669672 131669672 C T LRRC8A Missense_Mutation p.P77S 0.15 tolerated(0.78) benign(0.003) TCGA-BF-A1Q0-01 9 133543670 133543670 C T PRDM12 Silent p.I180I 0.11 TCGA-BF-A1Q0-01 9 137801545 137801545 G C FCN1 3'UTR 0.15 TCGA-BF-A1Q0-01 9 138393782 138393782 C T MRPS2 Nonsense_Mutation p.R88* 0.38 TCGA-BF-A1Q0-01 9 139369253 139369253 G A SEC16A Missense_Mutation p.P939S 0.28 tolerated(0.12) benign(0.037) TCGA-BF-A1Q0-01 9 139371752 139371752 G A SEC16A Missense_Mutation p.P106S 0.34 tolerated(0.45) possibly_damaging(0.544) TCGA-BF-A1Q0-01 9 139616675 139616675 G A FAM69B Silent p.R135R 0.26 TCGA-BF-A1Q0-01 9 14823208 14823208 C T FREM1 Missense_Mutation p.G763R 0.39 deleterious(0) possibly_damaging(0.799) TCGA-BF-A1Q0-01 9 14863874 14863874 C T FREM1 Missense_Mutation p.E88K 0.13 deleterious(0.02) possibly_damaging(0.691) TCGA-BF-A1Q0-01 9 16419500 16419500 G A BNC2 Silent p.L929L 0.20 TCGA-BF-A1Q0-01 9 23692855 23692855 C T ELAVL2 Missense_Mutation p.M260I 0.21 tolerated(0.12) benign(0.001) TCGA-BF-A1Q0-01 9 32632781 32632781 C T TAF1L Missense_Mutation p.E933K 0.16 deleterious(0.01) benign(0.149) TCGA-BF-A1Q0-01 9 35045092 35045092 C T C9orf131 Silent p.F822F 0.10 TCGA-BF-A1Q0-01 9 35682204 35682204 G A TPM2 Intron 0.38 TCGA-BF-A1Q0-01 9 382626 382626 G A DOCK8 Missense_Mutation p.D907N 0.23 deleterious(0.02) benign(0.063) TCGA-BF-A1Q0-01 9 77280476 77280476 G A RORB Missense_Mutation p.G322E 0.18 deleterious(0.05) possibly_damaging(0.872) TCGA-BF-A1Q0-01 9 78784688 78784688 G A PCSK5 Missense_Mutation p.R563K 0.44 tolerated(1) benign(0.014) TCGA-BF-A1Q0-01 9 84532006 84532006 A G SPATA31D5P RNA 0.20 TCGA-BF-A1Q0-01 9 91606985 91606985 C T C9orf47 3'UTR 0.11 TCGA-BF-A1Q0-01 X 109764350 109764350 T A TDGF1P3 RNA 0.23 TCGA-BF-A1Q0-01 X 110406200 110406200 G A PAK3 Missense_Mutation p.E212K 0.37 tolerated(0.45) probably_damaging(0.997) TCGA-BF-A1Q0-01 X 110653511 110653511 C T DCX Missense_Mutation p.R120Q 0.46 deleterious(0) probably_damaging(0.96) TCGA-BF-A1Q0-01 X 114141205 114141205 G A HTR2C Missense_Mutation p.V202M 0.38 tolerated(0.15) benign(0.067) TCGA-BF-A1Q0-01 X 117053616 117053616 C T KLHL13 Silent p.R149R 0.67 TCGA-BF-A1Q0-01 X 123775834 123775834 G A TENM1 Silent p.C628C 0.36 TCGA-BF-A1Q0-01 X 127185936 127185936 C T ACTRT1 Missense_Mutation p.D84N 0.58 tolerated(0.05) probably_damaging(0.945) TCGA-BF-A1Q0-01 X 12736333 12736333 G A FRMPD4 Missense_Mutation p.E1130K 0.58 deleterious_low_confidence(0.04) benign(0.027) TCGA-BF-A1Q0-01 X 130408581 130408581 C T IGSF1 Missense_Mutation p.G1253E 0.35 tolerated(0.05) probably_damaging(1) TCGA-BF-A1Q0-01 X 130678899 130678899 G A OR13H1 Silent p.L284L 0.43 TCGA-BF-A1Q0-01 X 131228143 131228143 C T FRMD7 Silent p.K103K 0.23 TCGA-BF-A1Q0-01 X 135480047 135480047 C T GPR112 Missense_Mutation p.S2731F 0.33 deleterious(0) benign(0.297) TCGA-BF-A1Q0-01 X 141291305 141291305 C T MAGEC2 Missense_Mutation p.E157K 0.34 tolerated(0.63) benign(0.004) TCGA-BF-A1Q0-01 X 142717102 142717102 C T SLITRK4 Missense_Mutation p.R608Q 0.40 tolerated(0.59) benign(0.062) TCGA-BF-A1Q0-01 X 150348464 150348464 G A GPR50 Missense_Mutation p.E137K 0.65 tolerated(0.36) benign(0.01) TCGA-BF-A1Q0-01 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.36 TCGA-BF-A1Q0-01 X 153133825 153133825 G A L1CAM Silent p.P545P 0.39 TCGA-BF-A1Q0-01 X 153555954 153555954 C A TKTL1 Silent p.V473V 0.20 TCGA-BF-A1Q0-01 X 153555960 153555960 C G TKTL1 Missense_Mutation p.D475E 0.24 deleterious(0) probably_damaging(0.997) TCGA-BF-A1Q0-01 X 155003856 155003856 C T SPRY3 Missense_Mutation p.S108L 0.31 tolerated(0.51) benign(0.17) TCGA-BF-A1Q0-01 X 1746618 1746618 G A ASMT Missense_Mutation p.E133K 0.24 tolerated(1) benign(0.002) TCGA-BF-A1Q0-01 X 19948046 19948046 C T CXorf23 Missense_Mutation p.G626S 0.43 tolerated(0.22) possibly_damaging(0.844) TCGA-BF-A1Q0-01 X 29973356 29973356 G A IL1RAPL1 Missense_Mutation p.E504K 0.23 deleterious(0.01) possibly_damaging(0.523) TCGA-BF-A1Q0-01 X 30268784 30268784 C T MAGEB1 Silent p.P58P 0.56 TCGA-BF-A1Q0-01 X 45013293 45013293 G A CXorf36 Silent p.L275L 0.53 TCGA-BF-A1Q0-01 X 48213512 48213512 G A SSX3 Missense_Mutation p.P68S 0.35 tolerated(0.07) benign(0.356) TCGA-BF-A1Q0-01 X 50147080 50147080 G A DGKK RNA 0.27 TCGA-BF-A1Q0-01 X 50659363 50659363 C G BMP15 Missense_Mutation p.P312R 0.20 deleterious(0) probably_damaging(1) TCGA-BF-A1Q0-01 X 69283074 69283074 G A OTUD6A Missense_Mutation p.E234K 0.65 deleterious(0) probably_damaging(0.997) TCGA-BF-A1Q0-01 X 69459652 69459652 G A AWAT1 Missense_Mutation p.D234N 0.24 deleterious(0.03) benign(0.024) TCGA-BF-A1Q0-01 X 71877446 71877446 G A PHKA1 Missense_Mutation p.P304S 0.18 deleterious(0) benign(0.355) TCGA-BF-A1Q0-01 X 72434151 72434151 C T NAP1L2 Missense_Mutation p.E60K 0.54 tolerated(0.72) benign(0.016) TCGA-BF-A1Q0-01 X 73063860 73063860 G A XIST RNA 0.29 TCGA-BF-A1Q0-01 Y 15028247 15028247 G A DDX3Y Missense_Mutation p.E462K 0.34 tolerated(0.08) benign(0.063) TCGA-BF-A3DJ-01 10 103310477 103310477 C T BTRC Nonsense_Mutation p.R560* 0.57 TCGA-BF-A3DJ-01 10 21106623 21106623 T A NEBL Splice_Site p.X686_splice 0.39 TCGA-BF-A3DJ-01 10 26849057 26849057 C T APBB1IP Silent p.S393S 0.36 TCGA-BF-A3DJ-01 10 50121362 50121362 C T LRRC18 Intron 0.62 TCGA-BF-A3DJ-01 10 73590984 73590984 T A PSAP Nonsense_Mutation p.K92* 0.69 TCGA-BF-A3DJ-01 10 84744883 84744883 G A NRG3 Missense_Mutation p.R538Q 0.60 tolerated(1) benign(0.003) TCGA-BF-A3DJ-01 10 88703091 88703091 C T MMRN2 Missense_Mutation p.D484N 0.68 tolerated(0.07) possibly_damaging(0.683) TCGA-BF-A3DJ-01 10 96580369 96580369 C T CYP2C19 Silent p.L312L 0.64 TCGA-BF-A3DJ-01 11 113286216 113286216 C T DRD2 Missense_Mutation p.R217H 0.33 deleterious(0) probably_damaging(0.975) TCGA-BF-A3DJ-01 11 11470319 11470319 G T GALNT18 Silent p.R134R 0.18 TCGA-BF-A3DJ-01 11 121970470 121970470 G A MIR125B1 RNA 0.24 TCGA-BF-A3DJ-01 11 13733493 13733493 C T FAR1 Nonsense_Mutation p.R263* 0.37 TCGA-BF-A3DJ-01 11 18042474 18042474 G A TPH1 3'UTR 0.41 TCGA-BF-A3DJ-01 11 36594863 36594863 C T RAG1 Silent p.A3A 0.38 TCGA-BF-A3DJ-01 11 46914607 46914607 G A LRP4 Silent p.A538A 0.28 TCGA-BF-A3DJ-01 11 5013332 5013332 T G MMP26 Missense_Mutation p.I245S 0.24 tolerated(0.11) probably_damaging(0.958) TCGA-BF-A3DJ-01 11 55433488 55433488 C T OR4C6 Silent p.P282P 0.40 TCGA-BF-A3DJ-01 11 55904316 55904316 C T OR8J3 Silent p.R293R 0.32 TCGA-BF-A3DJ-01 11 56409572 56409572 C T OR5AP2 Missense_Mutation p.G115E 0.14 tolerated(0.06) probably_damaging(0.979) TCGA-BF-A3DJ-01 11 57003456 57003456 C T APLNR Silent p.E341E 0.38 TCGA-BF-A3DJ-01 11 58980174 58980174 C T MPEG1 Silent p.R55R 0.39 TCGA-BF-A3DJ-01 11 63072257 63072257 G A SLC22A10 Nonsense_Mutation p.W498* 0.31 TCGA-BF-A3DJ-01 12 107371895 107371895 C A MTERFD3 Missense_Mutation p.G200C 0.06 deleterious(0) probably_damaging(0.958) TCGA-BF-A3DJ-01 12 123282714 123282714 C T CCDC62 Missense_Mutation p.S315L 0.50 tolerated(0.07) benign(0.011) TCGA-BF-A3DJ-01 12 13241778 13241778 C T GSG1 Intron 0.33 TCGA-BF-A3DJ-01 12 20870068 20870068 T G SLCO1C1 Missense_Mutation p.C227G 0.28 deleterious(0) probably_damaging(0.985) TCGA-BF-A3DJ-01 12 21919470 21919470 C T KCNJ8 Silent p.L154L 0.40 TCGA-BF-A3DJ-01 12 27133557 27133557 G A TM7SF3 Silent p.I326I 0.36 TCGA-BF-A3DJ-01 12 43824155 43824155 C T ADAMTS20 Silent p.Q1127Q 0.37 TCGA-BF-A3DJ-01 12 46244079 46244079 C T ARID2 Nonsense_Mutation p.Q725* 0.39 TCGA-BF-A3DJ-01 12 55368209 55368209 G A TESPA1 Silent p.S46S 0.35 TCGA-BF-A3DJ-01 12 55863874 55863874 C T OR6C70 Missense_Mutation p.D17N 0.45 tolerated_low_confidence(0.1) benign(0.011) TCGA-BF-A3DJ-01 12 64895190 64895190 C T TBK1 3'UTR 0.40 TCGA-BF-A3DJ-01 12 665929 665929 C T B4GALNT3 Silent p.N759N 0.39 TCGA-BF-A3DJ-01 12 8196560 8196560 C T FOXJ2 Missense_Mutation p.S164L 0.34 deleterious(0.01) probably_damaging(0.942) TCGA-BF-A3DJ-01 12 8995765 8995765 G A A2ML1 Silent p.P428P 0.35 TCGA-BF-A3DJ-01 14 22265815 22265815 C T TRAV8-1 Missense_Mutation p.S33F 0.64 tolerated(0.16) benign(0.132) TCGA-BF-A3DJ-01 14 24884562 24884562 C T NYNRIN Nonsense_Mutation p.Q1203* 0.59 TCGA-BF-A3DJ-01 14 34985456 34985458 AGT - EAPP 3'UTR 0.54 TCGA-BF-A3DJ-01 14 70512851 70512851 G A SLC8A3 Missense_Mutation p.T866I 0.69 deleterious(0) probably_damaging(0.98) TCGA-BF-A3DJ-01 14 75265550 75265550 C T YLPM1 Missense_Mutation p.H1184Y 0.75 probably_damaging(0.946) TCGA-BF-A3DJ-01 14 96136820 96136820 C A TCL6 RNA 0.54 TCGA-BF-A3DJ-01 15 48729974 48729974 C T FBN1 Missense_Mutation p.E2102K 0.33 benign(0.005) TCGA-BF-A3DJ-01 15 48729975 48729975 C T FBN1 Silent p.T2101T 0.34 TCGA-BF-A3DJ-01 15 50494781 50494781 C T SLC27A2 Silent p.I262I 0.37 TCGA-BF-A3DJ-01 15 52538156 52538156 G A MYO5C Missense_Mutation p.S688F 0.31 deleterious(0) probably_damaging(0.971) TCGA-BF-A3DJ-01 15 63901249 63901249 G A HERC1 3'UTR 0.53 TCGA-BF-A3DJ-01 15 75722644 75722644 C T SIN3A Missense_Mutation p.E25K 0.34 deleterious_low_confidence(0.03) benign(0.033) TCGA-BF-A3DJ-01 15 76072993 76072993 G A RN7SL319P 5'Flank 0.35 TCGA-BF-A3DJ-01 15 90903272 90903272 C T ZNF774 Intron 0.36 TCGA-BF-A3DJ-01 16 20435364 20435364 C T ACSM5 Silent p.P298P 0.21 TCGA-BF-A3DJ-01 16 22358417 22358417 G A CDR2 Missense_Mutation p.P412S 0.06 tolerated(0.83) benign(0.004) TCGA-BF-A3DJ-01 16 2474681 2474681 G A CCNF 5'Flank 0.46 TCGA-BF-A3DJ-01 16 30386139 30386139 C T MYLPF 5'UTR 0.20 TCGA-BF-A3DJ-01 16 3458476 3458476 C T ZNF174 Missense_Mutation p.R261W 0.36 tolerated(0.13) possibly_damaging(0.549) TCGA-BF-A3DJ-01 16 57116495 57116495 C T NLRC5 3'UTR 0.43 TCGA-BF-A3DJ-01 16 58437029 58437029 C T GINS3 Silent p.L111L 0.41 TCGA-BF-A3DJ-01 16 72107867 72107867 G A HPR Missense_Mutation p.D28N 0.35 tolerated(0.15) benign(0.039) TCGA-BF-A3DJ-01 17 17034973 17034973 G A MPRIP Silent p.Q154Q 0.39 TCGA-BF-A3DJ-01 17 18671873 18671873 G A FBXW10 Silent p.V577V 0.32 TCGA-BF-A3DJ-01 17 42980074 42980074 C T CCDC103 Silent p.S206S 0.36 TCGA-BF-A3DJ-01 17 61950700 61950700 C T CSH2 Splice_Site p.X4_splice 0.21 TCGA-BF-A3DJ-01 17 67016572 67016572 G A ABCA9 Missense_Mutation p.R853C 0.34 deleterious(0.01) benign(0.337) TCGA-BF-A3DJ-01 17 6929856 6929856 G A BCL6B Missense_Mutation p.E324K 0.41 tolerated(0.45) benign(0.003) TCGA-BF-A3DJ-01 18 21487828 21487828 G A LAMA3 Missense_Mutation p.R2315K 0.47 benign(0.035) TCGA-BF-A3DJ-01 18 23615801 23615801 C T SS18 Missense_Mutation p.E323K 0.29 deleterious_low_confidence(0.01) benign(0.133) TCGA-BF-A3DJ-01 18 31323520 31323520 C T ASXL3 Silent p.V1236V 0.28 TCGA-BF-A3DJ-01 18 47788478 47788478 G A CCDC11 Missense_Mutation p.R61C 0.33 tolerated(0.16) benign(0.015) TCGA-BF-A3DJ-01 18 56376664 56376664 C T MALT1 Missense_Mutation p.S235F 0.45 deleterious(0.04) benign(0.267) TCGA-BF-A3DJ-01 18 61569004 61569004 C T SERPINB2 Missense_Mutation p.S189F 0.30 deleterious(0.04) probably_damaging(0.984) TCGA-BF-A3DJ-01 18 6971869 6971869 C A LAMA1 Missense_Mutation p.G2296W 0.51 deleterious(0) probably_damaging(1) TCGA-BF-A3DJ-01 19 14262131 14262131 C A LPHN1 Missense_Mutation p.G1327C 0.40 tolerated(0.05) possibly_damaging(0.838) TCGA-BF-A3DJ-01 19 14522376 14522376 A T DDX39A Missense_Mutation p.L124Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DJ-01 19 17370518 17370518 G A USHBP1 Silent p.P264P 0.54 TCGA-BF-A3DJ-01 19 41712370 41712370 C T CYP2S1 Missense_Mutation p.H498Y 0.40 deleterious_low_confidence(0.04) benign(0.014) TCGA-BF-A3DJ-01 19 41807533 41807533 C G HNRNPUL1 Missense_Mutation p.D537E 0.35 tolerated(0.35) unknown(0) TCGA-BF-A3DJ-01 19 4231212 4231212 C T EBI3 Missense_Mutation p.P31L 0.31 tolerated(0.15) benign(0.224) TCGA-BF-A3DJ-01 19 43376067 43376067 G A PSG1 Silent p.L187L 0.32 TCGA-BF-A3DJ-01 19 47258849 47258849 C T FKRP Missense_Mutation p.R48C 0.31 deleterious(0.04) benign(0.306) TCGA-BF-A3DJ-01 19 52115398 52115398 C T SIGLEC5 3'UTR 0.54 TCGA-BF-A3DJ-01 19 53761967 53761967 C T VN1R2 Silent p.F113F 0.44 TCGA-BF-A3DJ-01 19 54385842 54385842 G A PRKCG Missense_Mutation p.E32K 0.40 tolerated(0.1) benign(0.048) TCGA-BF-A3DJ-01 19 56321459 56321459 C T NLRP11 Missense_Mutation p.G173S 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-BF-A3DJ-01 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.24 unknown(0) TCGA-BF-A3DJ-01 1 111440472 111440472 C T CD53 Silent p.F182F 0.42 TCGA-BF-A3DJ-01 1 118581996 118581996 C T SPAG17 Missense_Mutation p.E1080K 0.22 tolerated(0.96) benign(0.004) TCGA-BF-A3DJ-01 1 11983339 11983339 G A KIAA2013 Missense_Mutation p.P414L 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DJ-01 1 142713845 142713845 C T RP11-417J8.6 RNA 0.20 TCGA-BF-A3DJ-01 1 151774425 151774425 G A LINGO4 Silent p.L252L 0.39 TCGA-BF-A3DJ-01 1 152283903 152283903 G A FLG Silent p.S1153S 0.35 TCGA-BF-A3DJ-01 1 153410684 153410684 G A S100A7L2 Missense_Mutation p.P52L 0.29 deleterious(0.02) benign(0.001) TCGA-BF-A3DJ-01 1 154027298 154027298 G A NUP210L Missense_Mutation p.P1084L 0.39 deleterious(0.01) possibly_damaging(0.766) TCGA-BF-A3DJ-01 1 15793996 15793996 T G CELA2A Missense_Mutation p.F252C 0.42 deleterious(0) probably_damaging(1) TCGA-BF-A3DJ-01 1 159175671 159175671 G A DARC Missense_Mutation p.G150R 0.30 deleterious(0.04) benign(0.379) TCGA-BF-A3DJ-01 1 166927264 166927264 G A ILDR2 Missense_Mutation p.R41C 0.42 deleterious(0.01) possibly_damaging(0.77) TCGA-BF-A3DJ-01 1 16902873 16902873 G A NBPF1 Nonsense_Mutation p.Q670* 0.05 TCGA-BF-A3DJ-01 1 16912185 16912185 G A NBPF1 Missense_Mutation p.P263S 0.11 tolerated_low_confidence(0.95) benign(0.003) TCGA-BF-A3DJ-01 1 206647678 206647678 C T IKBKE Missense_Mutation p.S31F 0.39 deleterious(0) probably_damaging(0.992) TCGA-BF-A3DJ-01 1 207222322 207222322 G A YOD1 3'UTR 0.38 TCGA-BF-A3DJ-01 1 226075168 226075168 G A LEFTY1 Missense_Mutation p.S223L 0.35 tolerated(0.05) benign(0.094) TCGA-BF-A3DJ-01 1 22987842 22987842 T C C1QB Missense_Mutation p.F242S 0.46 deleterious(0) probably_damaging(1) TCGA-BF-A3DJ-01 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.24 tolerated(0.34) benign(0.034) TCGA-BF-A3DJ-01 1 248367272 248367272 C T OR2M3 Silent p.F301F 0.35 TCGA-BF-A3DJ-01 1 25757645 25757645 G A TMEM57 Missense_Mutation p.R19Q 0.11 deleterious(0.03) benign(0.342) TCGA-BF-A3DJ-01 1 41012399 41012399 C T ZNF684 Missense_Mutation p.S135L 0.30 tolerated(0.11) benign(0.006) TCGA-BF-A3DJ-01 1 46651330 46651330 C T TSPAN1 3'UTR 0.59 TCGA-BF-A3DJ-01 1 51435982 51435982 G A CDKN2C Intron 0.33 TCGA-BF-A3DJ-01 1 53444004 53444004 C T SCP2 Missense_Mutation p.P264S 0.30 tolerated(0.13) probably_damaging(0.948) TCGA-BF-A3DJ-01 1 983033 983033 C T AGRN Silent p.S1199S 0.41 TCGA-BF-A3DJ-01 20 1552515 1552515 C T SIRPB1 Missense_Mutation p.G201E 0.41 tolerated(0.16) benign(0.153) TCGA-BF-A3DJ-01 20 23420880 23420880 G A CSTL1 5'UTR 0.25 TCGA-BF-A3DJ-01 20 35399564 35399564 G A DSN1 Missense_Mutation p.H23Y 0.42 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-BF-A3DJ-01 20 60897344 60897344 G A LAMA5 Silent p.L2109L 0.29 TCGA-BF-A3DJ-01 21 43708014 43708014 C T ABCG1 Missense_Mutation p.S330F 0.03 deleterious(0.03) possibly_damaging(0.873) TCGA-BF-A3DJ-01 21 46067170 46067170 C T KRTAP10-11 Silent p.S265S 0.36 TCGA-BF-A3DJ-01 22 17073037 17073037 G A CCT8L2 Missense_Mutation p.A135V 0.71 deleterious(0.01) probably_damaging(0.911) TCGA-BF-A3DJ-01 22 26771641 26771641 C T SEZ6L Silent p.Y976Y 0.76 TCGA-BF-A3DJ-01 2 103067483 103067483 T C IL18RAP Splice_Site p.X462_splice 0.31 TCGA-BF-A3DJ-01 2 103300793 103300793 C T SLC9A2 Silent p.L475L 0.39 TCGA-BF-A3DJ-01 2 163076404 163076404 G A FAP Missense_Mutation p.P149S 0.48 tolerated(0.67) benign(0.021) TCGA-BF-A3DJ-01 2 179403940 179403940 C T TTN Missense_Mutation p.D32908N 0.44 TCGA-BF-A3DJ-01 2 179517218 179517218 G A TTN Missense_Mutation p.P13032S 0.34 TCGA-BF-A3DJ-01 2 179588843 179588843 C T TTN Missense_Mutation p.R7048Q 0.24 TCGA-BF-A3DJ-01 2 179594659 179594659 G A TTN Silent p.F6107F 0.47 TCGA-BF-A3DJ-01 2 179600503 179600503 G A TTN Silent p.F4890F 0.26 TCGA-BF-A3DJ-01 2 185801324 185801324 C T ZNF804A Missense_Mutation p.P401S 0.36 tolerated(0.24) benign(0.021) TCGA-BF-A3DJ-01 2 21228367 21228367 G A APOB Silent p.F3791F 0.38 TCGA-BF-A3DJ-01 2 220476375 220476375 C T STK11IP Silent p.L729L 0.35 TCGA-BF-A3DJ-01 2 24194250 24194250 C T UBXN2A Missense_Mutation p.S49F 0.37 deleterious(0) benign(0.304) TCGA-BF-A3DJ-01 2 36808483 36808483 G A FEZ2 Missense_Mutation p.S195F 0.32 tolerated(0.24) probably_damaging(0.995) TCGA-BF-A3DJ-01 2 40657293 40657293 C T SLC8A1 Missense_Mutation p.G43E 0.34 tolerated(0.26) benign(0.032) TCGA-BF-A3DJ-01 2 48915278 48915278 A G LHCGR Missense_Mutation p.V553A 0.35 deleterious(0) possibly_damaging(0.806) TCGA-BF-A3DJ-01 2 73680996 73680996 C T ALMS1 Missense_Mutation p.P2447S 0.35 probably_damaging(0.99) TCGA-BF-A3DJ-01 2 84518287 84518287 G A FUNDC2P2 RNA 0.30 TCGA-BF-A3DJ-01 3 119165985 119165985 T C TMEM39A Missense_Mutation p.Y152C 0.35 tolerated(0.18) possibly_damaging(0.807) TCGA-BF-A3DJ-01 3 130659495 130659495 C T ATP2C1 Missense_Mutation p.L162F 0.30 deleterious(0) probably_damaging(0.991) TCGA-BF-A3DJ-01 3 134911606 134911606 C T EPHB1 Missense_Mutation p.R691W 0.47 deleterious(0.02) possibly_damaging(0.893) TCGA-BF-A3DJ-01 3 17109501 17109501 G A PLCL2 Missense_Mutation p.E924K 0.31 deleterious(0) benign(0.065) TCGA-BF-A3DJ-01 3 196387641 196387641 G A NRROS Missense_Mutation p.G376E 0.28 deleterious(0.04) possibly_damaging(0.529) TCGA-BF-A3DJ-01 3 26751472 26751472 C T LRRC3B Silent p.I103I 0.42 TCGA-BF-A3DJ-01 3 73453542 73453542 T C PDZRN3 Missense_Mutation p.N308S 0.36 deleterious(0.01) probably_damaging(1) TCGA-BF-A3DJ-01 3 97983839 97983839 C T OR5H6 Silent p.I237I 0.37 TCGA-BF-A3DJ-01 4 126328204 126328204 G A FAT4 Missense_Mutation p.R1826K 0.35 possibly_damaging(0.669) TCGA-BF-A3DJ-01 4 15989294 15989294 C T PROM1 Missense_Mutation p.G708R 0.40 tolerated(0.12) benign(0.316) TCGA-BF-A3DJ-01 4 187206838 187206838 C T F11 Nonsense_Mutation p.Q451* 0.38 TCGA-BF-A3DJ-01 4 21950318 21950318 G T KCNIP4 5'UTR 0.25 TCGA-BF-A3DJ-01 4 55972864 55972864 C T KDR Missense_Mutation p.G509E 0.32 deleterious(0.02) benign(0.073) TCGA-BF-A3DJ-01 4 68934443 68934443 C T TMPRSS11F Silent p.G216G 0.37 TCGA-BF-A3DJ-01 4 69313172 69313172 G A TMPRSS11E 5'UTR 0.41 TCGA-BF-A3DJ-01 4 71201637 71201637 G A CABS1 Missense_Mutation p.G294E 0.27 tolerated(1) benign(0) TCGA-BF-A3DJ-01 4 81884785 81884785 C T C4orf22 3'Flank 0.26 TCGA-BF-A3DJ-01 4 860873 860873 G A GAK Missense_Mutation p.L915F 0.37 tolerated(1) benign(0.009) TCGA-BF-A3DJ-01 5 140183103 140183103 C T PCDHA3 Missense_Mutation p.P774L 0.56 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BF-A3DJ-01 5 140482253 140482253 C T PCDHB3 Missense_Mutation p.P674S 0.69 tolerated_low_confidence(0.06) benign(0.086) TCGA-BF-A3DJ-01 5 59940626 59940626 G A DEPDC1B Missense_Mutation p.H219Y 0.56 tolerated(0.79) benign(0.003) TCGA-BF-A3DJ-01 5 80547077 80547077 G A CKMT2 Silent p.R42R 0.65 TCGA-BF-A3DJ-01 6 109818714 109818714 G A AK9 Missense_Mutation p.R1757C 0.48 tolerated(0.05) benign(0.072) TCGA-BF-A3DJ-01 6 28539833 28539833 T C SCAND3 Missense_Mutation p.E1278G 0.37 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-BF-A3DJ-01 6 32029272 32029272 G A TNXB Missense_Mutation p.T2465I 0.43 probably_damaging(0.991) TCGA-BF-A3DJ-01 6 49696524 49696524 C T CRISP3 Silent p.L242L 0.29 TCGA-BF-A3DJ-01 6 76023861 76023861 C T FILIP1 Missense_Mutation p.E563K 0.50 tolerated(0.1) benign(0.225) TCGA-BF-A3DJ-01 6 90402494 90402494 G A MDN1 Missense_Mutation p.H3419Y 0.56 benign(0.001) TCGA-BF-A3DJ-01 7 128498177 128498177 C T FLNC Silent p.S2632S 0.38 TCGA-BF-A3DJ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-BF-A3DJ-01 7 141955085 141955085 C T PRSS58 Missense_Mutation p.E76K 0.42 deleterious(0) probably_damaging(0.915) TCGA-BF-A3DJ-01 7 23352000 23352000 G T IGF2BP3 Missense_Mutation p.P574H 0.34 deleterious_low_confidence(0) benign(0.289) TCGA-BF-A3DJ-01 7 38301806 38301806 C T TRGC1 Missense_Mutation p.M115I 0.42 tolerated(0.56) benign(0) TCGA-BF-A3DJ-01 7 93625629 93625629 G A BET1 Missense_Mutation p.S50F 0.24 deleterious(0) probably_damaging(0.989) TCGA-BF-A3DJ-01 7 99262788 99262788 C T CYP3A5 Splice_Site p.X224_splice 0.41 TCGA-BF-A3DJ-01 8 106814320 106814320 G A ZFPM2 Silent p.V670V 0.64 TCGA-BF-A3DJ-01 8 139145027 139145027 C T FAM135B Missense_Mutation p.E1344K 0.69 deleterious(0) possibly_damaging(0.898) TCGA-BF-A3DJ-01 8 144887330 144887330 G T SCRIB Missense_Mutation p.F874L 0.20 probably_damaging(0.995) TCGA-BF-A3DJ-01 8 144917823 144917823 G A NRBP2 3'UTR 0.26 TCGA-BF-A3DJ-01 8 2048677 2048677 G A MYOM2 Missense_Mutation p.D818N 0.59 deleterious(0.02) probably_damaging(0.928) TCGA-BF-A3DJ-01 8 28625822 28625822 A G INTS9 Silent p.I606I 0.70 TCGA-BF-A3DJ-01 8 56436410 56436410 G T XKR4 Missense_Mutation p.C526F 0.18 deleterious(0) benign(0.23) TCGA-BF-A3DJ-01 8 56436411 56436411 T G XKR4 Missense_Mutation p.C526W 0.18 deleterious(0) possibly_damaging(0.628) TCGA-BF-A3DJ-01 8 73479985 73479985 C T KCNB2 Missense_Mutation p.P6S 0.68 tolerated_low_confidence(0.1) benign(0.01) TCGA-BF-A3DJ-01 8 92406163 92406163 G C SLC26A7 Splice_Site p.X611_splice 0.62 TCGA-BF-A3DJ-01 8 92972425 92972425 C T RUNX1T1 3'UTR 0.29 TCGA-BF-A3DJ-01 9 113168926 113168926 G A SVEP1 Missense_Mutation p.S2985L 0.71 benign(0.375) TCGA-BF-A3DJ-01 9 136259526 136259526 C T C9orf96 Missense_Mutation p.S231F 0.53 tolerated(0.32) benign(0.417) TCGA-BF-A3DJ-01 9 19786271 19786271 G A SLC24A2 Silent p.I198I 0.62 TCGA-BF-A3DJ-01 9 90313685 90313685 C T DAPK1 Missense_Mutation p.S909L 0.61 tolerated(0.08) benign(0.001) TCGA-BF-A3DJ-01 9 90503773 90503773 G A SPATA31E1 3'UTR 0.75 TCGA-BF-A3DJ-01 X 100183491 100183491 G A XKRX 5'UTR 0.30 TCGA-BF-A3DJ-01 X 103495543 103495543 C T ESX1 Missense_Mutation p.R196Q 0.39 deleterious(0) possibly_damaging(0.664) TCGA-BF-A3DJ-01 X 115585523 115585523 C T SLC6A14 Missense_Mutation p.P440L 0.43 deleterious(0) probably_damaging(1) TCGA-BF-A3DJ-01 X 117527200 117527200 G A WDR44 Silent p.L264L 0.34 TCGA-BF-A3DJ-01 X 123554186 123554186 C T TENM1 Missense_Mutation p.E1653K 0.34 tolerated(0.13) benign(0.081) TCGA-BF-A3DJ-01 X 129147333 129147333 C G BCORL1 Missense_Mutation p.N195K 0.38 unknown(0) TCGA-BF-A3DJ-01 X 139866437 139866437 G A CDR1 Missense_Mutation p.P32L 0.40 tolerated(0.1) benign(0) TCGA-BF-A3DJ-01 X 151128345 151128345 C T GABRE Silent p.V250V 0.31 TCGA-BF-A3DJ-01 X 153132318 153132318 C T L1CAM Silent p.R739R 0.43 TCGA-BF-A3DJ-01 X 153137720 153137720 G A L1CAM Missense_Mutation p.T96I 0.38 tolerated(0.44) benign(0.021) TCGA-BF-A3DJ-01 X 34149758 34149758 G T FAM47A Missense_Mutation p.P213Q 0.31 tolerated(0.47) probably_damaging(0.998) TCGA-BF-A3DJ-01 X 35820703 35820703 G A MAGEB16 Missense_Mutation p.M130I 0.39 tolerated(0.13) benign(0.211) TCGA-BF-A3DJ-01 X 54956439 54956439 C T TRO Silent p.I1094I 0.38 TCGA-BF-A3DJ-01 X 73063804 73063804 G A XIST RNA 0.43 TCGA-BF-A3DL-01 10 101715388 101715388 G A DNMBP Missense_Mutation p.P615S 0.42 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 10 116014789 116014789 G A VWA2 Silent p.L81L 0.46 TCGA-BF-A3DL-01 10 118960782 118960782 G A KCNK18 Silent p.T112T 0.42 TCGA-BF-A3DL-01 10 122348818 122348818 C T PPAPDC1A Missense_Mutation p.S207F 0.41 deleterious(0) benign(0.063) TCGA-BF-A3DL-01 10 123298164 123298164 G A FGFR2 Silent p.T230T 0.46 TCGA-BF-A3DL-01 10 123843501 123843501 G A TACC2 Missense_Mutation p.E496K 0.46 benign(0.184) TCGA-BF-A3DL-01 10 124345772 124345772 C T DMBT1 Silent p.G552G 0.54 TCGA-BF-A3DL-01 10 1262994 1262994 C T ADARB2 Missense_Mutation p.E527K 0.36 deleterious(0) probably_damaging(0.929) TCGA-BF-A3DL-01 10 129906685 129906685 G A MKI67 Missense_Mutation p.P1140L 0.43 deleterious(0.01) possibly_damaging(0.531) TCGA-BF-A3DL-01 10 135367701 135367701 G A SYCE1 3'Flank 0.43 TCGA-BF-A3DL-01 10 15103833 15103833 G A OLAH Missense_Mutation p.D145N 0.38 deleterious(0.04) possibly_damaging(0.864) TCGA-BF-A3DL-01 10 46122313 46122313 C A ZFAND4 Missense_Mutation p.D320Y 0.51 deleterious(0.02) benign(0.002) TCGA-BF-A3DL-01 10 49440299 49440299 C T FRMPD2 Missense_Mutation p.D343N 0.46 deleterious(0.04) possibly_damaging(0.776) TCGA-BF-A3DL-01 10 54048502 54048502 C T PRKG1 Missense_Mutation p.P576S 0.43 tolerated(1) benign(0.006) TCGA-BF-A3DL-01 10 63851859 63851859 C T ARID5B Silent p.L879L 0.40 TCGA-BF-A3DL-01 10 70695789 70695789 C T DDX50 Missense_Mutation p.P517S 0.42 deleterious(0) probably_damaging(0.992) TCGA-BF-A3DL-01 10 73550072 73550072 C T CDH23 Missense_Mutation p.P1989L 0.29 deleterious(0.03) benign(0.25) TCGA-BF-A3DL-01 10 79576333 79576333 G A DLG5 Missense_Mutation p.S1334F 0.41 deleterious(0.02) benign(0.128) TCGA-BF-A3DL-01 10 98363745 98363745 C T PIK3AP1 Silent p.G744G 0.21 TCGA-BF-A3DL-01 10 99664443 99664443 C T CRTAC1 Missense_Mutation p.G327R 0.43 deleterious(0.04) benign(0.109) TCGA-BF-A3DL-01 11 101775612 101775612 G A ANGPTL5 Silent p.L124L 0.14 TCGA-BF-A3DL-01 11 102395778 102395778 G A MMP7 Missense_Mutation p.P168S 0.24 tolerated(0.08) probably_damaging(1) TCGA-BF-A3DL-01 11 104874009 104874009 G A CASP5 Missense_Mutation p.H192Y 0.35 deleterious(0.04) benign(0.151) TCGA-BF-A3DL-01 11 117392057 117392057 A T DSCAML1 Missense_Mutation p.L394H 0.15 deleterious(0) probably_damaging(0.986) TCGA-BF-A3DL-01 11 117392058 117392058 G T DSCAML1 Missense_Mutation p.L394I 0.15 tolerated(0.12) possibly_damaging(0.841) TCGA-BF-A3DL-01 11 117691320 117691320 C T FXYD2 Intron 0.27 TCGA-BF-A3DL-01 11 118895613 118895613 A - TRAPPC4 3'Flank 0.37 TCGA-BF-A3DL-01 11 119044377 119044377 G A NLRX1 Missense_Mutation p.G140E 0.24 tolerated(0.41) benign(0.001) TCGA-BF-A3DL-01 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.30 tolerated(0.19) benign(0.224) TCGA-BF-A3DL-01 11 124412768 124412768 G A OR8B12 Silent p.P261P 0.16 TCGA-BF-A3DL-01 11 124615495 124615495 C T NRGN Missense_Mutation p.R38W 0.26 deleterious(0) unknown(0) TCGA-BF-A3DL-01 11 126073526 126073526 C T RPUSD4 Silent p.K307K 0.17 TCGA-BF-A3DL-01 11 134212729 134212729 G A GLB1L2 Silent p.L56L 0.13 TCGA-BF-A3DL-01 11 17554934 17554934 G A USH1C Intron 0.45 TCGA-BF-A3DL-01 11 18754841 18754841 C T PTPN5 Missense_Mutation p.V387M 0.34 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 11 22777462 22777462 G A GAS2 Missense_Mutation p.G229E 0.25 deleterious(0) probably_damaging(0.99) TCGA-BF-A3DL-01 11 3405477 3405477 C T TSSC2 RNA 0.25 TCGA-BF-A3DL-01 11 4673817 4673817 C T OR51E1 Missense_Mutation p.P21S 0.31 deleterious(0.01) probably_damaging(1) TCGA-BF-A3DL-01 11 4790656 4790656 G A OR51F1 Silent p.L164L 0.19 TCGA-BF-A3DL-01 11 4791061 4791061 G A OR51F1 Silent p.I29I 0.20 TCGA-BF-A3DL-01 11 48238866 48238866 C T OR4B1 Missense_Mutation p.P169S 0.34 deleterious(0.03) possibly_damaging(0.562) TCGA-BF-A3DL-01 11 4928619 4928619 C T OR51A7 Missense_Mutation p.S7F 0.14 deleterious(0.01) possibly_damaging(0.655) TCGA-BF-A3DL-01 11 4968138 4968138 G A OR51A4 Missense_Mutation p.L65F 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 11 5068032 5068032 G A OR52J3 Missense_Mutation p.E93K 0.26 tolerated(0.07) benign(0.081) TCGA-BF-A3DL-01 11 5079909 5079909 C T OR52E2 Missense_Mutation p.E317K 0.34 tolerated_low_confidence(0.63) benign(0.001) TCGA-BF-A3DL-01 11 51515461 51515461 C T OR4C46 Silent p.S60S 0.37 TCGA-BF-A3DL-01 11 5345482 5345482 G A OR51B2 Missense_Mutation p.P16S 0.13 tolerated(0.07) possibly_damaging(0.883) TCGA-BF-A3DL-01 11 5510840 5510840 G A OR52D1 Missense_Mutation p.E302K 0.14 tolerated(0.06) probably_damaging(0.993) TCGA-BF-A3DL-01 11 55418899 55418899 C T OR4S2 Missense_Mutation p.H174Y 0.15 deleterious(0.02) benign(0.133) TCGA-BF-A3DL-01 11 55579489 55579489 C T OR5L1 Missense_Mutation p.P183S 0.15 tolerated(0.22) benign(0.367) TCGA-BF-A3DL-01 11 55944293 55944293 C T OR5J2 Missense_Mutation p.S67L 0.34 deleterious(0) probably_damaging(0.964) TCGA-BF-A3DL-01 11 56380701 56380701 G A OR5M1 Missense_Mutation p.S93F 0.12 deleterious(0.01) possibly_damaging(0.897) TCGA-BF-A3DL-01 11 57310403 57310403 G A SMTNL1 Silent p.K114K 0.25 TCGA-BF-A3DL-01 11 57971480 57971480 G A OR1S2 Silent p.I58I 0.16 TCGA-BF-A3DL-01 11 58722338 58722338 C T GLYATL1 Silent p.I125I 0.40 TCGA-BF-A3DL-01 11 6007457 6007457 G A OR52L1 Missense_Mutation p.S235F 0.33 deleterious(0) benign(0.133) TCGA-BF-A3DL-01 11 63141459 63141459 C T SLC22A9 Missense_Mutation p.A252V 0.15 deleterious(0) probably_damaging(0.989) TCGA-BF-A3DL-01 11 64029508 64029508 C T PLCB3 Silent p.N666N 0.31 TCGA-BF-A3DL-01 11 64056654 64056654 A C GPR137 Silent p.P415P 0.34 TCGA-BF-A3DL-01 11 64056655 64056655 C T GPR137 Missense_Mutation p.P416S 0.33 deleterious_low_confidence(0.05) benign(0.015) TCGA-BF-A3DL-01 11 64602625 64602625 G A CDC42BPG Silent p.L652L 0.33 TCGA-BF-A3DL-01 11 65315017 65315017 G A LTBP3 Missense_Mutation p.P667L 0.15 deleterious(0) possibly_damaging(0.688) TCGA-BF-A3DL-01 11 65780320 65780320 C T CST6 Silent p.F88F 0.21 TCGA-BF-A3DL-01 11 66192167 66192167 C T NPAS4 Silent p.V602V 0.17 TCGA-BF-A3DL-01 11 703110 703110 C T TMEM80 Missense_Mutation p.A156V 0.16 tolerated(0.14) probably_damaging(0.998) TCGA-BF-A3DL-01 11 72424118 72424118 G A ARAP1 Intron 0.38 TCGA-BF-A3DL-01 11 74800612 74800612 C T OR2AT4 Silent p.L49L 0.17 TCGA-BF-A3DL-01 11 76893570 76893570 G A MYO7A Silent p.V1070V 0.31 TCGA-BF-A3DL-01 11 77602489 77602489 G A INTS4 Missense_Mutation p.T823I 0.12 deleterious(0.03) benign(0.021) TCGA-BF-A3DL-01 11 812574 812574 T A RPLP2 Missense_Mutation p.V71E 0.38 tolerated(0.08) unknown(0) TCGA-BF-A3DL-01 11 82917156 82917156 T C ANKRD42 Silent p.G65G 0.36 TCGA-BF-A3DL-01 11 85397201 85397201 C A CCDC89 5'UTR 0.13 TCGA-BF-A3DL-01 11 94334973 94334973 T A PIWIL4 Missense_Mutation p.S465T 0.18 tolerated(0.14) benign(0.005) TCGA-BF-A3DL-01 12 101493479 101493479 C T ANO4 Silent p.F675F 0.40 TCGA-BF-A3DL-01 12 102811662 102811662 C T IGF1 Silent p.K174K 0.42 TCGA-BF-A3DL-01 12 103245512 103245512 C T PAH Missense_Mutation p.G289R 0.31 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 12 108589650 108589650 G A WSCD2 Missense_Mutation p.R14Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A3DL-01 12 112184963 112184963 C T ACAD10 Silent p.R820R 0.48 TCGA-BF-A3DL-01 12 113445518 113445518 G A OAS2 Silent p.R555R 0.20 TCGA-BF-A3DL-01 12 120750760 120750760 C T SIRT4 Missense_Mutation p.P289L 0.24 deleterious(0.01) benign(0.288) TCGA-BF-A3DL-01 12 125834288 125834288 C T TMEM132B Missense_Mutation p.P115S 0.43 tolerated(0.44) benign(0.234) TCGA-BF-A3DL-01 12 14827575 14827575 C T GUCY2C Silent p.R356R 0.48 TCGA-BF-A3DL-01 12 21032512 21032512 C T SLCO1B3 Silent p.F426F 0.35 TCGA-BF-A3DL-01 12 21918683 21918683 C T KCNJ8 Missense_Mutation p.G417R 0.40 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-BF-A3DL-01 12 25260825 25260825 C T LRMP Missense_Mutation p.S444F 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-BF-A3DL-01 12 300272 300272 C T SLC6A12 Missense_Mutation p.E603K 0.22 tolerated_low_confidence(0.14) benign(0.002) TCGA-BF-A3DL-01 12 40114658 40114658 G A C12orf40 Missense_Mutation p.E522K 0.17 deleterious(0.02) benign(0.187) TCGA-BF-A3DL-01 12 406238 406238 A G KDM5A Silent p.A1401A 0.53 TCGA-BF-A3DL-01 12 43944717 43944717 C T ADAMTS20 Missense_Mutation p.G150S 0.43 deleterious(0.02) probably_damaging(1) TCGA-BF-A3DL-01 12 45059292 45059292 G A NELL2 Silent p.I523I 0.33 TCGA-BF-A3DL-01 12 52845694 52845694 C T KRT6B Missense_Mutation p.G57S 0.17 tolerated(0.09) unknown(0) TCGA-BF-A3DL-01 12 55945604 55945604 C T OR6C4 Silent p.I198I 0.40 TCGA-BF-A3DL-01 12 56347547 56347547 A T DGKA Missense_Mutation p.S735C 0.25 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-BF-A3DL-01 12 58087910 58087910 G A OS9 5'UTR 0.31 TCGA-BF-A3DL-01 12 64679829 64679829 A T C12orf56 Silent p.L215L 0.37 TCGA-BF-A3DL-01 12 6946236 6946236 C T LEPREL2 Missense_Mutation p.L515F 0.40 tolerated(0.19) probably_damaging(0.999) TCGA-BF-A3DL-01 12 70150363 70150363 C T RAB3IP Missense_Mutation p.R160C 0.32 deleterious(0) possibly_damaging(0.901) TCGA-BF-A3DL-01 12 7277224 7277224 C T RBP5 Splice_Site p.X118_splice 0.33 TCGA-BF-A3DL-01 12 72866853 72866853 G A TRHDE Missense_Mutation p.G448S 0.21 deleterious(0) possibly_damaging(0.448) TCGA-BF-A3DL-01 12 7654007 7654007 C T CD163 Missense_Mutation p.G62E 0.22 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 12 78400717 78400717 G A NAV3 Missense_Mutation p.E467K 0.43 tolerated(0.27) benign(0.068) TCGA-BF-A3DL-01 12 78513686 78513686 G A NAV3 Missense_Mutation p.G1237E 0.25 deleterious(0.01) probably_damaging(1) TCGA-BF-A3DL-01 12 88926227 88926227 C T KITLG Missense_Mutation p.M61I 0.27 tolerated(0.12) possibly_damaging(0.677) TCGA-BF-A3DL-01 12 94653466 94653466 C G PLXNC1 Silent p.V1069V 0.27 TCGA-BF-A3DL-01 13 113439559 113439559 C T ATP11A Silent p.I50I 0.29 TCGA-BF-A3DL-01 13 22084147 22084147 G A MICU2 Nonsense_Mutation p.R253* 0.33 TCGA-BF-A3DL-01 13 25362126 25362126 G A RNF17 Silent p.R204R 0.18 TCGA-BF-A3DL-01 13 35619464 35619464 T G NBEA Missense_Mutation p.L217V 0.24 deleterious(0.01) possibly_damaging(0.748) TCGA-BF-A3DL-01 13 39542571 39542571 G A STOML3 Missense_Mutation p.A206V 0.34 tolerated(0.18) probably_damaging(0.999) TCGA-BF-A3DL-01 13 50586298 50586298 C T TRIM13 Silent p.S77S 0.27 TCGA-BF-A3DL-01 13 61986305 61986305 C T PCDH20 Missense_Mutation p.D643N 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-BF-A3DL-01 13 77459381 77459381 G A KCTD12 Silent p.A301A 0.32 TCGA-BF-A3DL-01 13 99047569 99047569 C T FARP1 Missense_Mutation p.S418F 0.24 deleterious(0.04) benign(0.172) TCGA-BF-A3DL-01 14 106204074 106204074 C A IGHG1 3'UTR 0.29 TCGA-BF-A3DL-01 14 106236037 106236037 T A IGHG3 Missense_Mutation p.K256N 0.28 tolerated(0.08) possibly_damaging(0.628) TCGA-BF-A3DL-01 14 106926337 106926337 G A IGHV3-43 Missense_Mutation p.L69F 0.28 tolerated_low_confidence(0.66) benign(0.002) TCGA-BF-A3DL-01 14 20404636 20404636 C T OR4K1 Missense_Mutation p.L271F 0.23 deleterious(0.03) possibly_damaging(0.827) TCGA-BF-A3DL-01 14 22616536 22616536 C T TRAV27 Missense_Mutation p.H93Y 0.23 tolerated(0.83) benign(0.212) TCGA-BF-A3DL-01 14 23855722 23855722 C T MYH6 Silent p.Q1587Q 0.30 TCGA-BF-A3DL-01 14 24028953 24028953 G A AP1G2 3'UTR 0.36 TCGA-BF-A3DL-01 14 24544723 24544723 G A CPNE6 Missense_Mutation p.D263N 0.44 deleterious(0.01) benign(0.112) TCGA-BF-A3DL-01 14 25101178 25101178 C T GZMB Silent p.E162E 0.24 TCGA-BF-A3DL-01 14 37203756 37203756 T C SLC25A21 Missense_Mutation p.I76V 0.33 tolerated(0.11) benign(0.181) TCGA-BF-A3DL-01 14 38679184 38679184 G A SSTR1 Missense_Mutation p.R197H 0.37 tolerated(0.09) benign(0.176) TCGA-BF-A3DL-01 14 58701235 58701235 C T ACTR10 Missense_Mutation p.P407L 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A3DL-01 14 67665012 67665012 C T FAM71D Missense_Mutation p.P45L 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-BF-A3DL-01 14 74824812 74824812 G A VRTN Silent p.K442K 0.25 TCGA-BF-A3DL-01 14 88652128 88652128 C T KCNK10 Silent p.R461R 0.27 TCGA-BF-A3DL-01 14 94173165 94173165 G A UNC79 Missense_Mutation p.R2431Q 0.31 tolerated(0.33) probably_damaging(0.996) TCGA-BF-A3DL-01 14 94404084 94404084 G A ASB2 Silent p.I577I 0.37 TCGA-BF-A3DL-01 14 94750329 94750329 G A SERPINA10 Silent p.G436G 0.21 TCGA-BF-A3DL-01 14 94935623 94935623 C T SERPINA9 Silent p.G203G 0.26 TCGA-BF-A3DL-01 14 95109850 95109850 G A SERPINA13P RNA 0.33 TCGA-BF-A3DL-01 14 96944806 96944806 C T AK7 Silent p.F520F 0.27 TCGA-BF-A3DL-01 15 22332666 22332666 C T RP11-69H14.6 RNA 0.10 TCGA-BF-A3DL-01 15 22709178 22709178 C T AC116165.1 5'Flank 0.12 TCGA-BF-A3DL-01 15 24922704 24922704 C T NPAP1 Missense_Mutation p.H564Y 0.31 tolerated(0.56) benign(0.019) TCGA-BF-A3DL-01 15 33022961 33022961 G A GREM1 Missense_Mutation p.G24R 0.42 tolerated(0.16) possibly_damaging(0.543) TCGA-BF-A3DL-01 15 33023430 33023430 C T GREM1 Missense_Mutation p.S180F 0.25 deleterious(0) probably_damaging(0.979) TCGA-BF-A3DL-01 15 42632918 42632918 A - GANC Frame_Shift_Del p.K707Rfs*54 0.22 TCGA-BF-A3DL-01 15 54305220 54305220 G A UNC13C Silent p.K40K 0.20 TCGA-BF-A3DL-01 15 54527229 54527229 G A UNC13C Missense_Mutation p.A1025T 0.31 tolerated_low_confidence(0.14) benign(0.001) TCGA-BF-A3DL-01 15 54919198 54919198 G A UNC13C Missense_Mutation p.D2178N 0.33 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-BF-A3DL-01 15 60728370 60728370 C T NARG2 Missense_Mutation p.E828K 0.31 tolerated(0.86) benign(0.124) TCGA-BF-A3DL-01 15 69011509 69011509 C T CORO2B Silent p.Y369Y 0.28 TCGA-BF-A3DL-01 15 69548365 69548365 G A GLCE Missense_Mutation p.E74K 0.25 tolerated_low_confidence(0.36) benign(0.024) TCGA-BF-A3DL-01 15 74883771 74883771 G A ARID3B Silent p.R387R 0.37 TCGA-BF-A3DL-01 15 75761126 75761126 G A PTPN9 Missense_Mutation p.A589V 0.38 tolerated_low_confidence(0.06) benign(0.032) TCGA-BF-A3DL-01 15 75941532 75941532 T G SNX33 Missense_Mutation p.F30C 0.35 tolerated(0.24) probably_damaging(0.996) TCGA-BF-A3DL-01 15 75941533 75941533 T C SNX33 Silent p.F30F 0.35 TCGA-BF-A3DL-01 15 78401635 78401635 G A CIB2 Silent p.S96S 0.35 TCGA-BF-A3DL-01 15 83499402 83499402 C T WHAMM Missense_Mutation p.P565S 0.30 tolerated(0.15) benign(0.038) TCGA-BF-A3DL-01 15 83499403 83499403 C T WHAMM Missense_Mutation p.P565L 0.30 tolerated(0.09) benign(0.051) TCGA-BF-A3DL-01 15 85403135 85403135 G A ALPK3 Splice_Site p.X1567_splice 0.31 TCGA-BF-A3DL-01 15 86940619 86940619 C T AGBL1 Silent p.I753I 0.51 TCGA-BF-A3DL-01 15 89414753 89414753 G A ACAN Missense_Mutation p.E2363K 0.21 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 15 97327388 97327388 C T SPATA8 Missense_Mutation p.S32L 0.34 tolerated_low_confidence(0.12) possibly_damaging(0.519) TCGA-BF-A3DL-01 16 1254232 1254232 C T CACNA1H Missense_Mutation p.P742L 0.24 deleterious(0.02) possibly_damaging(0.632) TCGA-BF-A3DL-01 16 16302704 16302704 C A ABCC6 Missense_Mutation p.R225S 0.28 tolerated(0.1) benign(0.019) TCGA-BF-A3DL-01 16 1822442 1822442 T A MRPS34 Missense_Mutation p.E146V 0.24 deleterious(0) probably_damaging(0.996) TCGA-BF-A3DL-01 16 19474686 19474686 C T TMC5 Silent p.S411S 0.26 TCGA-BF-A3DL-01 16 20648709 20648709 G A ACSM1 Missense_Mutation p.P394L 0.25 tolerated(0.15) benign(0.022) TCGA-BF-A3DL-01 16 21209161 21209161 G T ZP2 Nonsense_Mutation p.S674* 0.30 TCGA-BF-A3DL-01 16 25251594 25251594 G A ZKSCAN2 Missense_Mutation p.S816L 0.29 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DL-01 16 2812878 2812878 C T SRRM2 Silent p.S783S 0.28 TCGA-BF-A3DL-01 16 30749171 30749171 C G SRCAP Missense_Mutation p.P2604A 0.25 unknown(0) TCGA-BF-A3DL-01 16 31098164 31098164 C T RP11-196G11.1 3'Flank 0.34 TCGA-BF-A3DL-01 16 31926241 31926241 C T ZNF267 Missense_Mutation p.T224I 0.21 deleterious(0.04) benign(0.001) TCGA-BF-A3DL-01 16 31926242 31926242 C T ZNF267 Silent p.T224T 0.22 TCGA-BF-A3DL-01 16 68853245 68853245 C T CDH1 Missense_Mutation p.S543F 0.35 deleterious(0.05) benign(0.033) TCGA-BF-A3DL-01 16 68961870 68961870 C T TANGO6 Missense_Mutation p.L843F 0.52 deleterious(0) benign(0.305) TCGA-BF-A3DL-01 16 70995892 70995892 C T HYDIN Missense_Mutation p.E1980K 0.22 benign(0.006) TCGA-BF-A3DL-01 16 77401502 77401502 C T ADAMTS18 Missense_Mutation p.R205K 0.24 deleterious(0.05) probably_damaging(0.96) TCGA-BF-A3DL-01 16 77465333 77465333 C T ADAMTS18 Silent p.L118L 0.32 TCGA-BF-A3DL-01 16 77850940 77850940 G A VAT1L Missense_Mutation p.G119E 0.28 tolerated(0.22) possibly_damaging(0.609) TCGA-BF-A3DL-01 16 80718528 80718528 G A CDYL2 Missense_Mutation p.H175Y 0.38 deleterious(0.02) benign(0.001) TCGA-BF-A3DL-01 16 84779250 84779250 C - USP10 Frame_Shift_Del p.S388* 0.19 TCGA-BF-A3DL-01 16 84808815 84808815 C T USP10 Silent p.T731T 0.35 TCGA-BF-A3DL-01 17 10357125 10357125 G A MYH4 Silent p.I923I 0.50 TCGA-BF-A3DL-01 17 1384096 1384096 G A MYO1C Silent p.F237F 0.55 TCGA-BF-A3DL-01 17 18389403 18389403 G A LGALS9C Missense_Mutation p.G96E 0.67 deleterious(0) probably_damaging(0.961) TCGA-BF-A3DL-01 17 26919204 26919204 G A SPAG5 Missense_Mutation p.S353F 0.61 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A3DL-01 17 36478143 36478143 C T MRPL45 Silent p.I265I 0.56 TCGA-BF-A3DL-01 17 39768589 39768589 T C KRT16 Missense_Mutation p.K118E 0.43 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 17 55926609 55926609 C T MRPS23 Silent p.R69R 0.48 TCGA-BF-A3DL-01 17 61571353 61571353 C T ACE Silent p.V1069V 0.47 TCGA-BF-A3DL-01 17 66511673 66511673 A - PRKAR1A Frame_Shift_Del p.R45Dfs*84 0.24 TCGA-BF-A3DL-01 17 71364676 71364676 G A SDK2 Silent p.F1679F 0.53 TCGA-BF-A3DL-01 17 72584882 72584882 C T CD300LD Silent p.L49L 0.54 TCGA-BF-A3DL-01 17 72915642 72915642 C T USH1G Missense_Mutation p.S430N 0.38 tolerated(0.47) benign(0.007) TCGA-BF-A3DL-01 17 7318850 7318850 C T NLGN2 Missense_Mutation p.P353L 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 17 73728265 73728265 C G ITGB4 Missense_Mutation p.R467G 0.69 deleterious(0.03) benign(0.168) TCGA-BF-A3DL-01 17 73761205 73761205 T C GALK1 Missense_Mutation p.R5G 0.54 tolerated(0.4) benign(0.013) TCGA-BF-A3DL-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.56 TCGA-BF-A3DL-01 17 79287643 79287643 C T TMEM105 Silent p.G66G 0.49 TCGA-BF-A3DL-01 17 80543973 80543973 G A FOXK2 Silent p.A491A 0.60 TCGA-BF-A3DL-01 18 10681742 10681742 G A PIEZO2 Silent p.F2452F 0.34 TCGA-BF-A3DL-01 18 28914104 28914104 G A DSG1 Missense_Mutation p.G315E 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 18 31537398 31537398 G A NOL4 Silent p.I440I 0.17 TCGA-BF-A3DL-01 18 51820391 51820391 C G POLI Missense_Mutation p.Q593E 0.23 tolerated(0.3) benign(0.005) TCGA-BF-A3DL-01 18 59167683 59167683 G A CDH20 Silent p.V203V 0.32 TCGA-BF-A3DL-01 18 61564393 61564393 G A SERPINB2 Silent p.G119G 0.24 TCGA-BF-A3DL-01 19 10084864 10084864 C T COL5A3 Missense_Mutation p.G1163R 0.35 probably_damaging(1) TCGA-BF-A3DL-01 19 11224428 11224428 C T LDLR Missense_Mutation p.P526S 0.36 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 19 12995729 12995729 G A KLF1 Silent p.H353H 0.26 TCGA-BF-A3DL-01 19 13011310 13011310 C T SYCE2 Silent p.V153V 0.29 TCGA-BF-A3DL-01 19 16910771 16910771 C A NWD1 Silent p.A1178A 0.23 TCGA-BF-A3DL-01 19 17611327 17611327 C A SLC27A1 Missense_Mutation p.Q453K 0.25 tolerated(1) benign(0.017) TCGA-BF-A3DL-01 19 22155020 22155020 T G ZNF208 Missense_Mutation p.H939P 0.41 deleterious(0) unknown(0) TCGA-BF-A3DL-01 19 22363108 22363108 G A ZNF676 Missense_Mutation p.H471Y 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-BF-A3DL-01 19 22939793 22939793 C T ZNF99 3'Flank 0.36 TCGA-BF-A3DL-01 19 23328846 23328846 C T ZNF730 Missense_Mutation p.H334Y 0.21 deleterious(0) possibly_damaging(0.759) TCGA-BF-A3DL-01 19 23844924 23844924 T C ZNF675 Missense_Mutation p.E73G 0.28 deleterious(0.04) benign(0.004) TCGA-BF-A3DL-01 19 325681 325681 G A MIER2 Silent p.F203F 0.33 TCGA-BF-A3DL-01 19 35823807 35823807 G A CD22 Missense_Mutation p.R131Q 0.30 tolerated(0.37) benign(0.048) TCGA-BF-A3DL-01 19 36236335 36236335 C T PSENEN 5'UTR 0.29 TCGA-BF-A3DL-01 19 36595489 36595489 C T WDR62 Missense_Mutation p.P1408L 0.41 deleterious_low_confidence(0.01) benign(0.194) TCGA-BF-A3DL-01 19 36940432 36940432 G A ZNF566 Missense_Mutation p.T236I 0.20 tolerated(0.07) probably_damaging(0.984) TCGA-BF-A3DL-01 19 3734316 3734316 C T TJP3 Intron 0.27 TCGA-BF-A3DL-01 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.29 deleterious(0.04) benign(0.382) TCGA-BF-A3DL-01 19 3907764 3907764 C T ATCAY Missense_Mutation p.P131S 0.36 tolerated(0.35) benign(0.31) TCGA-BF-A3DL-01 19 40900022 40900022 G A PRX Missense_Mutation p.P1413S 0.29 deleterious(0.01) possibly_damaging(0.803) TCGA-BF-A3DL-01 19 42342324 42342324 C T LYPD4 Missense_Mutation p.G75R 0.22 tolerated(0.08) probably_damaging(0.983) TCGA-BF-A3DL-01 19 42841001 42841001 T A MEGF8 Missense_Mutation p.D429E 0.31 tolerated(0.32) benign(0.006) TCGA-BF-A3DL-01 19 4317241 4317241 G A FSD1 Missense_Mutation p.G255R 0.23 deleterious(0.05) benign(0.062) TCGA-BF-A3DL-01 19 43766069 43766069 C T PSG9 Missense_Mutation p.E218K 0.28 deleterious(0) probably_damaging(0.996) TCGA-BF-A3DL-01 19 48967815 48967815 G A KCNJ14 Silent p.K364K 0.25 TCGA-BF-A3DL-01 19 49259604 49259604 C T FGF21 Silent p.L37L 0.29 TCGA-BF-A3DL-01 19 5131448 5131448 G A KDM4B Silent p.P559P 0.32 TCGA-BF-A3DL-01 19 51535331 51535331 G A KLK12 Silent p.I86I 0.19 TCGA-BF-A3DL-01 19 51582886 51582886 G A KLK14 Missense_Mutation p.R112C 0.32 deleterious(0.02) benign(0.219) TCGA-BF-A3DL-01 19 51958750 51958750 C T SIGLEC8 Missense_Mutation p.E325K 0.32 tolerated(0.21) possibly_damaging(0.9) TCGA-BF-A3DL-01 19 51958751 51958751 C A SIGLEC8 Silent p.G324G 0.31 TCGA-BF-A3DL-01 19 52250258 52250258 C T FPR1 Intron 0.35 TCGA-BF-A3DL-01 19 52627300 52627300 C T ZNF616 Silent p.G5G 0.37 TCGA-BF-A3DL-01 19 53887165 53887165 C T ZNF525 3'UTR 0.31 TCGA-BF-A3DL-01 19 55144586 55144586 G A LILRB1 Missense_Mutation p.E360K 0.25 tolerated(0.06) benign(0.154) TCGA-BF-A3DL-01 19 55877462 55877462 G A IL11 Silent p.I171I 0.25 TCGA-BF-A3DL-01 19 56735006 56735006 C T ZSCAN5A Silent p.R194R 0.27 TCGA-BF-A3DL-01 19 57640948 57640948 C T USP29 Missense_Mutation p.S302L 0.32 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 19 6187651 6187651 G A ACSBG2 Silent p.L574L 0.21 TCGA-BF-A3DL-01 19 6481730 6481730 G A DENND1C 5'UTR 0.28 TCGA-BF-A3DL-01 19 6906493 6906493 C T EMR1 Silent p.I333I 0.31 TCGA-BF-A3DL-01 19 8662151 8662151 G A ADAMTS10 Silent p.L287L 0.37 TCGA-BF-A3DL-01 19 8808404 8808404 G A ACTL9 Silent p.H216H 0.24 TCGA-BF-A3DL-01 19 8976592 8976592 C T MUC16 Silent p.L14128L 0.27 TCGA-BF-A3DL-01 19 9016683 9016683 G A MUC16 Missense_Mutation p.P12685L 0.28 benign(0.148) TCGA-BF-A3DL-01 19 9049091 9049091 G A MUC16 Missense_Mutation p.S10847L 0.27 benign(0.216) TCGA-BF-A3DL-01 19 9070835 9070835 G A MUC16 Silent p.P5537P 0.34 TCGA-BF-A3DL-01 19 9225634 9225634 C T OR7G1 Missense_Mutation p.R269Q 0.30 tolerated(0.08) possibly_damaging(0.801) TCGA-BF-A3DL-01 1 100961573 100961573 A C CDC14A Missense_Mutation p.K422N 0.28 tolerated(0.06) benign(0.034) TCGA-BF-A3DL-01 1 103388915 103388915 C T COL11A1 Missense_Mutation p.E1211K 0.11 unknown(0) TCGA-BF-A3DL-01 1 111146446 111146446 G A KCNA2 Missense_Mutation p.T320I 0.23 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 1 115524020 115524020 C T SYCP1 Missense_Mutation p.P816S 0.28 tolerated(0.34) benign(0.007) TCGA-BF-A3DL-01 1 11594528 11594528 G A PTCHD2 Missense_Mutation p.E1156K 0.40 tolerated(0.27) benign(0.014) TCGA-BF-A3DL-01 1 12907317 12907317 C T HNRNPCL1 Missense_Mutation p.E276K 0.17 deleterious_low_confidence(0.01) benign(0.11) TCGA-BF-A3DL-01 1 13036666 13036666 T C PRAMEF22 Silent p.R246R 0.17 TCGA-BF-A3DL-01 1 144952211 144952211 G A PDE4DIP Nonsense_Mutation p.Q170* 0.07 TCGA-BF-A3DL-01 1 151020721 151020721 G A C1orf56 Missense_Mutation p.G133E 0.26 tolerated(0.09) probably_damaging(0.988) TCGA-BF-A3DL-01 1 152059401 152059401 C T TCHHL1 Missense_Mutation p.E253K 0.27 tolerated(0.05) benign(0.43) TCGA-BF-A3DL-01 1 152130351 152130351 C T RPTN Silent p.L5L 0.37 TCGA-BF-A3DL-01 1 152326000 152326000 C T FLG2 Missense_Mutation p.G1421E 0.30 benign(0.341) TCGA-BF-A3DL-01 1 155348153 155348153 G A ASH1L Missense_Mutation p.S2084F 0.28 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-BF-A3DL-01 1 155450714 155450714 G A ASH1L Silent p.S649S 0.35 TCGA-BF-A3DL-01 1 156386625 156386625 G A C1orf61 Silent p.L3L 0.34 TCGA-BF-A3DL-01 1 156784098 156784098 G A SH2D2A Silent p.S109S 0.25 TCGA-BF-A3DL-01 1 156784099 156784099 G A SH2D2A Missense_Mutation p.S109F 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-A3DL-01 1 156844747 156844747 C T NTRK1 Missense_Mutation p.T434M 0.22 deleterious(0.04) benign(0.317) TCGA-BF-A3DL-01 1 156874639 156874639 G A PEAR1 Silent p.Q67Q 0.32 TCGA-BF-A3DL-01 1 158325805 158325805 A G CD1E Missense_Mutation p.T272A 0.24 deleterious(0.01) probably_damaging(0.915) TCGA-BF-A3DL-01 1 159163792 159163792 G A CADM3 Missense_Mutation p.G252E 0.25 tolerated(0.05) benign(0.138) TCGA-BF-A3DL-01 1 159275833 159275833 C T FCER1A Silent p.F129F 0.32 TCGA-BF-A3DL-01 1 16101263 16101263 G A FBLIM1 Missense_Mutation p.E288K 0.27 tolerated(0.08) benign(0.091) TCGA-BF-A3DL-01 1 16257505 16257505 C T SPEN Silent p.L1590L 0.34 TCGA-BF-A3DL-01 1 16350376 16350376 C T CLCNKA Missense_Mutation p.A61V 0.39 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 1 16736383 16736383 C T SPATA21 Silent p.R100R 0.41 TCGA-BF-A3DL-01 1 175365861 175365861 C T TNR Silent p.T353T 0.35 TCGA-BF-A3DL-01 1 177250488 177250488 C T BRINP2 Missense_Mutation p.R726W 0.21 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DL-01 1 181741281 181741281 C T CACNA1E Missense_Mutation p.P1685S 0.35 tolerated(0.78) possibly_damaging(0.876) TCGA-BF-A3DL-01 1 181762921 181762921 G A CACNA1E Missense_Mutation p.D2007N 0.32 deleterious(0.04) possibly_damaging(0.539) TCGA-BF-A3DL-01 1 183190096 183190096 G A LAMC2 Missense_Mutation p.D214N 0.22 tolerated(0.22) possibly_damaging(0.58) TCGA-BF-A3DL-01 1 186302359 186302359 G A TPR Missense_Mutation p.P1784S 0.24 possibly_damaging(0.641) TCGA-BF-A3DL-01 1 190067932 190067932 C A BRINP3 Missense_Mutation p.R506I 0.29 deleterious(0.01) possibly_damaging(0.462) TCGA-BF-A3DL-01 1 192153620 192153620 G A RGS18 Missense_Mutation p.R215Q 0.38 deleterious(0.01) possibly_damaging(0.811) TCGA-BF-A3DL-01 1 201186506 201186506 C T IGFN1 Silent p.S3229S 0.37 TCGA-BF-A3DL-01 1 204009438 204009438 G A LINC00303 RNA 0.30 TCGA-BF-A3DL-01 1 205896384 205896384 C T SLC26A9 Missense_Mutation p.M416I 0.21 deleterious(0) benign(0.213) TCGA-BF-A3DL-01 1 214492290 214492290 C T SMYD2 Silent p.F166F 0.28 TCGA-BF-A3DL-01 1 214503535 214503535 C T SMYD2 Silent p.L244L 0.13 TCGA-BF-A3DL-01 1 216251555 216251555 C T USH2A Silent p.V1816V 0.28 TCGA-BF-A3DL-01 1 226421194 226421194 C T LIN9 Missense_Mutation p.D442N 0.37 tolerated(0.49) benign(0.028) TCGA-BF-A3DL-01 1 22974088 22974088 C T C1QC Missense_Mutation p.R184C 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-BF-A3DL-01 1 233296119 233296119 C T PCNXL2 Missense_Mutation p.V1143M 0.36 tolerated(0.09) benign(0.004) TCGA-BF-A3DL-01 1 237774281 237774281 G A RYR2 Missense_Mutation p.E1635K 0.32 possibly_damaging(0.57) TCGA-BF-A3DL-01 1 238048799 238048799 G A ZP4 Missense_Mutation p.S351F 0.25 deleterious(0.02) probably_damaging(0.942) TCGA-BF-A3DL-01 1 2422699 2422699 G A PLCH2 Silent p.S501S 0.45 TCGA-BF-A3DL-01 1 243542101 243542101 A G SDCCAG8 Missense_Mutation p.R518G 0.20 tolerated(0.08) benign(0.061) TCGA-BF-A3DL-01 1 248458257 248458257 G A OR2T12 Silent p.P208P 0.28 TCGA-BF-A3DL-01 1 248652022 248652022 G A OR2T5 Missense_Mutation p.G45R 0.34 deleterious(0.01) benign(0.049) TCGA-BF-A3DL-01 1 248844738 248844738 G A OR14I1 Missense_Mutation p.L290F 0.27 deleterious(0.02) benign(0.093) TCGA-BF-A3DL-01 1 26514795 26514795 G A CNKSR1 Missense_Mutation p.E509K 0.28 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DL-01 1 26873382 26873382 T C RPS6KA1 Missense_Mutation p.S54P 0.40 tolerated(0.42) benign(0.007) TCGA-BF-A3DL-01 1 33956962 33956962 C T ZSCAN20 Silent p.G368G 0.23 TCGA-BF-A3DL-01 1 36550626 36550626 C T TEKT2 Missense_Mutation p.S35F 0.31 deleterious(0) probably_damaging(0.979) TCGA-BF-A3DL-01 1 3673334 3673334 C T CCDC27 Silent p.F197F 0.33 TCGA-BF-A3DL-01 1 38433717 38433717 G A SF3A3 Silent p.S457S 0.28 TCGA-BF-A3DL-01 1 45484800 45484800 G A ZSWIM5 Missense_Mutation p.P962S 0.31 deleterious(0) unknown(0) TCGA-BF-A3DL-01 1 45793958 45793958 G A HPDL 3'UTR 0.17 TCGA-BF-A3DL-01 1 46496333 46496333 C T MAST2 Missense_Mutation p.P870S 0.20 tolerated_low_confidence(0.34) benign(0.011) TCGA-BF-A3DL-01 1 55148437 55148437 G A MROH7 Silent p.K830K 0.32 TCGA-BF-A3DL-01 1 57383442 57383442 G A C8A 3'UTR 0.35 TCGA-BF-A3DL-01 1 64603123 64603123 G A ROR1 Missense_Mutation p.R185H 0.34 tolerated(0.07) benign(0.082) TCGA-BF-A3DL-01 1 68615937 68615937 G A WLS Silent p.I300I 0.35 TCGA-BF-A3DL-01 1 70494040 70494040 G A LRRC7 Missense_Mutation p.E623K 0.33 deleterious(0.01) possibly_damaging(0.872) TCGA-BF-A3DL-01 1 75037752 75037752 C T C1orf173 Silent p.G1214G 0.19 TCGA-BF-A3DL-01 1 78383723 78383738 GGTAAGAAGCTTGAGG - NEXN Splice_Site p.X100_splice 0.20 TCGA-BF-A3DL-01 1 87033125 87033125 C T CLCA4 Nonsense_Mutation p.R325* 0.28 TCGA-BF-A3DL-01 1 87104685 87104685 G A RP4-651E10.4 Intron 0.27 TCGA-BF-A3DL-01 1 94528687 94528687 T C ABCA4 Missense_Mutation p.T581A 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A3DL-01 20 10582441 10582441 C T SLX4IP Missense_Mutation p.L127F 0.31 tolerated(0.7) possibly_damaging(0.719) TCGA-BF-A3DL-01 20 1285629 1285629 G A SNPH Missense_Mutation p.R139Q 0.23 deleterious(0.03) possibly_damaging(0.897) TCGA-BF-A3DL-01 20 1600573 1600573 G A SIRPB1 Silent p.S6S 0.30 TCGA-BF-A3DL-01 20 1961046 1961046 G A PDYN Missense_Mutation p.L230F 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 20 20168620 20168620 G A C20orf26 Missense_Mutation p.E478K 0.39 tolerated(0.5) benign(0.284) TCGA-BF-A3DL-01 20 30412093 30412093 G A MYLK2 Missense_Mutation p.E304K 0.15 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DL-01 20 30414655 30414655 G A MYLK2 Missense_Mutation p.E380K 0.24 deleterious(0) probably_damaging(0.922) TCGA-BF-A3DL-01 20 33872285 33872285 C T EIF6 Silent p.A2A 0.28 TCGA-BF-A3DL-01 20 3677325 3677325 C T SIGLEC1 Missense_Mutation p.R864Q 0.36 tolerated(0.11) benign(0.202) TCGA-BF-A3DL-01 20 42165071 42165071 C T L3MBTL1 Nonsense_Mutation p.R694* 0.29 TCGA-BF-A3DL-01 20 42169713 42169713 C T L3MBTL1 Missense_Mutation p.S823F 0.39 tolerated_low_confidence(0.11) possibly_damaging(0.447) TCGA-BF-A3DL-01 20 46319016 46319016 G A SULF2 Silent p.T197T 0.22 TCGA-BF-A3DL-01 20 47630414 47630414 T C ARFGEF2 Missense_Mutation p.F1366L 0.33 deleterious(0) benign(0.096) TCGA-BF-A3DL-01 20 49236604 49236604 G A FAM65C Missense_Mutation p.T59M 0.19 deleterious(0) benign(0.26) TCGA-BF-A3DL-01 20 49509288 49509288 G T ADNP Missense_Mutation p.P655T 0.25 tolerated(0.46) probably_damaging(0.997) TCGA-BF-A3DL-01 20 52835653 52835653 C T PFDN4 Silent p.F123F 0.24 TCGA-BF-A3DL-01 20 60992363 60992363 C T RBBP8NL Silent p.R39R 0.40 TCGA-BF-A3DL-01 20 8705358 8705358 A T PLCB1 Missense_Mutation p.Y546F 0.33 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 21 10920136 10920136 C T TPTE Missense_Mutation p.R373Q 0.08 deleterious(0) probably_damaging(0.958) TCGA-BF-A3DL-01 21 37620844 37620844 C T DOPEY2 Missense_Mutation p.S1659F 0.29 deleterious(0) possibly_damaging(0.84) TCGA-BF-A3DL-01 21 40762628 40762628 C T WRB Missense_Mutation p.S36F 0.31 tolerated(0.11) possibly_damaging(0.544) TCGA-BF-A3DL-01 21 40762629 40762629 C T WRB Silent p.S36S 0.30 TCGA-BF-A3DL-01 21 44151974 44151974 G A PDE9A Silent p.R119R 0.49 TCGA-BF-A3DL-01 22 17663631 17663631 C T CECR1 Missense_Mutation p.D368N 0.36 deleterious(0.01) probably_damaging(0.975) TCGA-BF-A3DL-01 22 18073077 18073077 G A SLC25A18 3'UTR 0.34 TCGA-BF-A3DL-01 22 24583635 24583635 C T SUSD2 Missense_Mutation p.P663L 0.29 deleterious(0) probably_damaging(0.995) TCGA-BF-A3DL-01 22 26422717 26422717 G A MYO18B Silent p.R2259R 0.21 TCGA-BF-A3DL-01 22 35481760 35481760 C T ISX 3'UTR 0.34 TCGA-BF-A3DL-01 22 42464507 42464507 A C NAGA Missense_Mutation p.W30G 0.32 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DL-01 22 42486878 42486878 C T NDUFA6 5'UTR 0.18 TCGA-BF-A3DL-01 22 47059053 47059053 C T GRAMD4 Missense_Mutation p.P195S 0.35 deleterious(0) possibly_damaging(0.844) TCGA-BF-A3DL-01 22 50277355 50277355 C T ZBED4 Silent p.F15F 0.31 TCGA-BF-A3DL-01 22 50303663 50303663 G A ALG12 Silent p.I181I 0.32 TCGA-BF-A3DL-01 22 50682244 50682244 G A TUBGCP6 Silent p.F215F 0.20 TCGA-BF-A3DL-01 2 100065964 100065964 G A REV1 Missense_Mutation p.P62S 0.54 deleterious(0) probably_damaging(0.994) TCGA-BF-A3DL-01 2 103149136 103149136 C T SLC9A4 Nonsense_Mutation p.Q796* 0.29 TCGA-BF-A3DL-01 2 109379960 109379960 C T RANBP2 Missense_Mutation p.H989Y 0.55 tolerated(0.07) benign(0.015) TCGA-BF-A3DL-01 2 119727901 119727901 C T MARCO Silent p.F137F 0.29 TCGA-BF-A3DL-01 2 138169397 138169397 G A THSD7B Missense_Mutation p.D972N 0.50 tolerated(0.14) possibly_damaging(0.728) TCGA-BF-A3DL-01 2 176964993 176964993 G A HOXD12 Missense_Mutation p.G155E 0.64 tolerated(1) possibly_damaging(0.666) TCGA-BF-A3DL-01 2 178705018 178705018 T C PDE11A Missense_Mutation p.N487S 0.49 deleterious(0) probably_damaging(0.987) TCGA-BF-A3DL-01 2 179436952 179436952 G A TTN Missense_Mutation p.S24636F 0.55 TCGA-BF-A3DL-01 2 179439831 179439831 C T TTN Silent p.Q23676Q 0.55 TCGA-BF-A3DL-01 2 179440332 179440332 C T TTN Silent p.V23509V 0.53 TCGA-BF-A3DL-01 2 179452036 179452036 T A TTN Missense_Mutation p.Y21301F 0.46 TCGA-BF-A3DL-01 2 179604643 179604643 G A TTN Silent p.I4439I 0.53 TCGA-BF-A3DL-01 2 179636157 179636157 C T TTN Missense_Mutation p.E2633K 0.50 TCGA-BF-A3DL-01 2 179641269 179641269 G A TTN Silent p.I1774I 0.49 TCGA-BF-A3DL-01 2 211542633 211542633 C T CPS1 Missense_Mutation p.A1482V 0.54 deleterious(0.01) possibly_damaging(0.864) TCGA-BF-A3DL-01 2 21239402 21239402 C T APOB Missense_Mutation p.D1081N 0.44 probably_damaging(0.996) TCGA-BF-A3DL-01 2 222307567 222307567 C T EPHA4 Missense_Mutation p.E686K 0.48 deleterious(0) probably_damaging(0.984) TCGA-BF-A3DL-01 2 222307568 222307568 C T EPHA4 Silent p.L685L 0.48 TCGA-BF-A3DL-01 2 222307631 222307631 C T EPHA4 Silent p.R664R 0.56 TCGA-BF-A3DL-01 2 234112893 234112893 C T INPP5D Missense_Mutation p.P1021S 0.59 tolerated(0.27) benign(0.247) TCGA-BF-A3DL-01 2 32476208 32476208 C T NLRC4 Missense_Mutation p.R242K 0.43 tolerated(0.71) benign(0.003) TCGA-BF-A3DL-01 2 53897638 53897638 A G ASB3 3'UTR 0.45 TCGA-BF-A3DL-01 2 70121099 70121099 C T SNRNP27 5'UTR 0.14 TCGA-BF-A3DL-01 2 79385524 79385524 G A REG3A Silent p.F87F 0.20 TCGA-BF-A3DL-01 2 84518063 84518063 G A FUNDC2P2 RNA 0.14 TCGA-BF-A3DL-01 2 89197177 89197177 C T IGKV5-2 Silent p.L74L 0.09 TCGA-BF-A3DL-01 3 108172924 108172924 G A MYH15 Silent p.V796V 0.30 TCGA-BF-A3DL-01 3 120114567 120114567 G A FSTL1 3'UTR 0.30 TCGA-BF-A3DL-01 3 121828152 121828152 G A CD86 Nonsense_Mutation p.W248* 0.31 TCGA-BF-A3DL-01 3 121838438 121838438 C T CD86 3'UTR 0.26 TCGA-BF-A3DL-01 3 121980746 121980746 C T CASR Silent p.I288I 0.25 TCGA-BF-A3DL-01 3 122003352 122003352 T G CASR Missense_Mutation p.C861G 0.36 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 3 122345787 122345787 C T PARP15 Nonsense_Mutation p.Q449* 0.21 TCGA-BF-A3DL-01 3 1262427 1262427 C T CNTN6 Missense_Mutation p.P38S 0.34 tolerated(0.14) benign(0.01) TCGA-BF-A3DL-01 3 129231158 129231158 G A IFT122 Missense_Mutation p.D1015N 0.27 deleterious(0) benign(0.258) TCGA-BF-A3DL-01 3 130159121 130159121 A G COL6A5 Missense_Mutation p.K1980R 0.28 deleterious(0.01) benign(0.354) TCGA-BF-A3DL-01 3 132086674 132086674 G A ACPP 3'UTR 0.31 TCGA-BF-A3DL-01 3 137893608 137893608 G C DBR1 Missense_Mutation p.H10Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DL-01 3 18393630 18393630 G A SATB1 Silent p.L545L 0.42 TCGA-BF-A3DL-01 3 186006599 186006599 G A DGKG Silent p.V148V 0.32 TCGA-BF-A3DL-01 3 19926043 19926043 G A EFHB Silent p.L666L 0.12 TCGA-BF-A3DL-01 3 19926044 19926044 A C EFHB Missense_Mutation p.L666R 0.12 deleterious(0.01) possibly_damaging(0.665) TCGA-BF-A3DL-01 3 39230094 39230094 G A XIRP1 Silent p.I281I 0.30 TCGA-BF-A3DL-01 3 42916897 42916897 C T CYP8B1 Missense_Mutation p.D138N 0.33 tolerated(0.52) possibly_damaging(0.815) TCGA-BF-A3DL-01 3 50329957 50329957 G A IFRD2 5'Flank 0.23 TCGA-BF-A3DL-01 3 50332838 50332838 G A HYAL3 Missense_Mutation p.H66Y 0.26 tolerated(1) benign(0.014) TCGA-BF-A3DL-01 3 51690122 51690122 G A RAD54L2 Missense_Mutation p.M1054I 0.29 tolerated(0.39) benign(0) TCGA-BF-A3DL-01 3 52794947 52794947 G A NEK4 Missense_Mutation p.T276I 0.22 deleterious(0) possibly_damaging(0.873) TCGA-BF-A3DL-01 3 53326850 53326850 G A DCP1A Missense_Mutation p.P211L 0.33 tolerated(0.16) benign(0.018) TCGA-BF-A3DL-01 3 74347312 74347312 C T CNTN3 Missense_Mutation p.G733S 0.27 tolerated(0.06) probably_damaging(1) TCGA-BF-A3DL-01 3 8590277 8590277 C T LMCD1 Silent p.I137I 0.46 TCGA-BF-A3DL-01 3 96962934 96962934 C T EPHA6 Missense_Mutation p.T470I 0.28 tolerated(0.34) benign(0.15) TCGA-BF-A3DL-01 3 9781495 9781495 A G BRPF1 Missense_Mutation p.E471G 0.53 tolerated(0.29) probably_damaging(0.994) TCGA-BF-A3DL-01 4 101109105 101109105 C T DDIT4L Missense_Mutation p.R104Q 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-BF-A3DL-01 4 147562004 147562004 C A POU4F2 3'UTR 0.50 TCGA-BF-A3DL-01 4 153251889 153251889 G A FBXW7 Missense_Mutation p.P373S 0.36 tolerated(0.21) benign(0.072) TCGA-BF-A3DL-01 4 154542832 154542832 C T KIAA0922 Intron 0.22 TCGA-BF-A3DL-01 4 164534518 164534518 G A MARCH1 Missense_Mutation p.P64S 0.34 tolerated(0.06) possibly_damaging(0.816) TCGA-BF-A3DL-01 4 166964467 166964467 C T TLL1 Nonsense_Mutation p.Q474* 0.25 TCGA-BF-A3DL-01 4 169145470 169145470 C T DDX60 Missense_Mutation p.R1583K 0.34 tolerated(0.1) benign(0.12) TCGA-BF-A3DL-01 4 183090451 183090451 C T MIR1305 RNA 0.35 TCGA-BF-A3DL-01 4 189022404 189022404 C T TRIML2 Missense_Mutation p.E46K 0.31 tolerated(0.16) benign(0.021) TCGA-BF-A3DL-01 4 20736339 20736339 G A KCNIP4 Missense_Mutation p.S150F 0.29 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 4 36162133 36162133 C T ARAP2 Missense_Mutation p.G797E 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A3DL-01 4 39196180 39196180 C T WDR19 Missense_Mutation p.L103F 0.24 deleterious(0.01) possibly_damaging(0.751) TCGA-BF-A3DL-01 4 39439491 39439491 C T KLB Missense_Mutation p.S494F 0.28 deleterious(0) probably_damaging(0.972) TCGA-BF-A3DL-01 4 40133427 40133427 G A N4BP2 Missense_Mutation p.E1512K 0.28 tolerated(0.2) possibly_damaging(0.773) TCGA-BF-A3DL-01 4 41262709 41262709 G A UCHL1 Missense_Mutation p.E74K 0.40 tolerated(0.14) benign(0.056) TCGA-BF-A3DL-01 4 42895503 42895503 G A GRXCR1 Missense_Mutation p.E74K 0.33 tolerated(0.33) benign(0.046) TCGA-BF-A3DL-01 4 42965151 42965151 G A GRXCR1 Silent p.G209G 0.33 TCGA-BF-A3DL-01 4 53306 53306 C T ZNF595 5'UTR 0.04 TCGA-BF-A3DL-01 4 54373514 54373514 C T LNX1 Missense_Mutation p.E249K 0.21 tolerated(0.45) benign(0.371) TCGA-BF-A3DL-01 4 55124954 55124954 G A PDGFRA Missense_Mutation p.A7T 0.24 tolerated(0.54) benign(0.003) TCGA-BF-A3DL-01 4 55948738 55948738 G A KDR Missense_Mutation p.P1243S 0.18 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 4 56890735 56890735 C T CEP135 Missense_Mutation p.S1130F 0.27 deleterious(0) probably_damaging(0.983) TCGA-BF-A3DL-01 4 619608 619608 G A PDE6B Missense_Mutation p.D65N 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-BF-A3DL-01 4 69519864 69519864 C T UGT2B15 Missense_Mutation p.D402N 0.22 deleterious(0.02) benign(0.063) TCGA-BF-A3DL-01 4 69520822 69520822 C T UGT2B15 Missense_Mutation p.D362N 0.17 deleterious(0.01) possibly_damaging(0.519) TCGA-BF-A3DL-01 4 70079978 70079978 G A UGT2B11 Missense_Mutation p.P155S 0.16 deleterious(0.05) probably_damaging(1) TCGA-BF-A3DL-01 4 70080315 70080315 G A UGT2B11 Silent p.I42I 0.26 TCGA-BF-A3DL-01 4 71509972 71509972 C T ENAM Silent p.N943N 0.23 TCGA-BF-A3DL-01 4 82096107 82096107 C A PRKG2 Missense_Mutation p.K156N 0.31 deleterious(0) probably_damaging(0.926) TCGA-BF-A3DL-01 4 8588947 8588947 C T GPR78 Missense_Mutation p.P317S 0.39 tolerated(0.91) benign(0.038) TCGA-BF-A3DL-01 4 88766882 88766882 C T MEPE Missense_Mutation p.P288S 0.29 tolerated(0.23) benign(0.4) TCGA-BF-A3DL-01 5 111540140 111540140 G A EPB41L4A Silent p.F436F 0.28 TCGA-BF-A3DL-01 5 129019833 129019833 G A ADAMTS19 Silent p.Q889Q 0.26 TCGA-BF-A3DL-01 5 137756404 137756404 C T KDM3B Missense_Mutation p.S1242F 0.25 deleterious(0.01) benign(0.14) TCGA-BF-A3DL-01 5 13859595 13859595 A C DNAH5 Missense_Mutation p.F1639C 0.35 probably_damaging(0.926) TCGA-BF-A3DL-01 5 139193816 139193816 T C PSD2 Silent p.L295L 0.21 TCGA-BF-A3DL-01 5 140237497 140237497 C T PCDHA10 Missense_Mutation p.R622C 0.29 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-BF-A3DL-01 5 140256303 140256303 G A PCDHA12 Missense_Mutation p.E416K 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A3DL-01 5 140558995 140558995 C T PCDHB8 Silent p.F460F 0.15 TCGA-BF-A3DL-01 5 140581584 140581584 C T PCDHB11 Missense_Mutation p.S746F 0.25 deleterious_low_confidence(0) benign(0.159) TCGA-BF-A3DL-01 5 140735521 140735521 C T PCDHGA4 Missense_Mutation p.R252C 0.31 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-BF-A3DL-01 5 145439781 145439781 C T SH3RF2 Silent p.I636I 0.40 TCGA-BF-A3DL-01 5 145638042 145638042 C T RBM27 Missense_Mutation p.P542L 0.29 deleterious(0.02) possibly_damaging(0.797) TCGA-BF-A3DL-01 5 150914116 150914116 G A FAT2 Missense_Mutation p.S3094L 0.36 probably_damaging(0.966) TCGA-BF-A3DL-01 5 160115096 160115096 G A ATP10B 5'UTR 0.27 TCGA-BF-A3DL-01 5 16067799 16067799 G A MARCH11 Silent p.I330I 0.39 TCGA-BF-A3DL-01 5 161495078 161495078 G A GABRG2 Missense_Mutation p.V25M 0.25 tolerated_low_confidence(0.05) benign(0.015) TCGA-BF-A3DL-01 5 167625861 167625861 C - TENM2 Frame_Shift_Del p.F968Lfs*3 0.19 TCGA-BF-A3DL-01 5 169135259 169135259 G A DOCK2 Missense_Mutation p.M490I 0.23 tolerated(0.31) benign(0.148) TCGA-BF-A3DL-01 5 175307031 175307031 G A CPLX2 Missense_Mutation p.D130N 0.23 tolerated_low_confidence(0.1) probably_damaging(0.994) TCGA-BF-A3DL-01 5 24488226 24488226 C T CDH10 Missense_Mutation p.R638Q 0.32 tolerated(0.07) benign(0.209) TCGA-BF-A3DL-01 5 39306872 39306872 G A C9 Silent p.L421L 0.30 TCGA-BF-A3DL-01 5 41000422 41000422 G A MROH2B Missense_Mutation p.P1461L 0.26 deleterious(0) probably_damaging(0.957) TCGA-BF-A3DL-01 5 41005017 41005017 C T MROH2B Missense_Mutation p.M1290I 0.35 tolerated(0.17) benign(0.067) TCGA-BF-A3DL-01 5 41058252 41058252 C T MROH2B Silent p.R223R 0.15 TCGA-BF-A3DL-01 5 41160461 41160461 G A C6 Silent p.P489P 0.35 TCGA-BF-A3DL-01 5 55202081 55202081 C T IL31RA Missense_Mutation p.S406F 0.28 tolerated(0.67) benign(0.014) TCGA-BF-A3DL-01 5 57790634 57790634 G A GAPT Missense_Mutation p.D91N 0.32 tolerated(0.58) benign(0) TCGA-BF-A3DL-01 5 64756115 64756115 C T ADAMTS6 Silent p.K171K 0.35 TCGA-BF-A3DL-01 5 76351386 76351386 G C AGGF1 Missense_Mutation p.E561Q 0.33 tolerated(0.1) benign(0.073) TCGA-BF-A3DL-01 5 78422036 78422036 C T BHMT Missense_Mutation p.P265S 0.19 tolerated(0.1) possibly_damaging(0.876) TCGA-BF-A3DL-01 5 79854997 79854997 G A ANKRD34B Missense_Mutation p.T281I 0.32 tolerated(1) benign(0.002) TCGA-BF-A3DL-01 6 102250277 102250277 G A GRIK2 Silent p.L389L 0.26 TCGA-BF-A3DL-01 6 10894137 10894137 G A SYCP2L Missense_Mutation p.G39E 0.18 deleterious(0.01) probably_damaging(0.959) TCGA-BF-A3DL-01 6 130762233 130762233 G A TMEM200A Missense_Mutation p.M222I 0.27 tolerated(0.43) benign(0) TCGA-BF-A3DL-01 6 139564218 139564218 C T TXLNB Silent p.V500V 0.25 TCGA-BF-A3DL-01 6 158537289 158537289 C T SERAC1 Missense_Mutation p.E477K 0.33 deleterious(0.01) possibly_damaging(0.758) TCGA-BF-A3DL-01 6 25826725 25826725 G A SLC17A1 Silent p.P57P 0.30 TCGA-BF-A3DL-01 6 25826726 25826726 G A SLC17A1 Missense_Mutation p.P57L 0.30 tolerated(0.86) benign(0.037) TCGA-BF-A3DL-01 6 28887948 28887948 A T TRIM27 Missense_Mutation p.H196Q 0.36 tolerated(0.27) benign(0) TCGA-BF-A3DL-01 6 35967854 35967854 C T SLC26A8 Silent p.L120L 0.28 TCGA-BF-A3DL-01 6 39162039 39162039 G A KCNK5 Silent p.F180F 0.28 TCGA-BF-A3DL-01 6 4073562 4073562 C T FAM217A Silent p.G83G 0.28 TCGA-BF-A3DL-01 6 44144323 44144323 G A CAPN11 Missense_Mutation p.R336K 0.17 tolerated(0.46) benign(0.001) TCGA-BF-A3DL-01 6 55147031 55147031 C T HCRTR2 Nonsense_Mutation p.R372* 0.46 TCGA-BF-A3DL-01 6 7578094 7578094 C T DSP Missense_Mutation p.S987F 0.38 probably_damaging(0.996) TCGA-BF-A3DL-01 6 84234310 84234310 G A PRSS35 Missense_Mutation p.D384N 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 7 100552576 100552576 C T MUC3A Missense_Mutation p.P443S 0.16 tolerated(0.13) probably_damaging(0.972) TCGA-BF-A3DL-01 7 102524679 102524679 C T FBXL13 Silent p.L363L 0.20 TCGA-BF-A3DL-01 7 103038451 103038451 C T SLC26A5 Missense_Mutation p.G300E 0.49 deleterious(0) probably_damaging(0.963) TCGA-BF-A3DL-01 7 103629660 103629660 C G RELN Silent p.G48G 0.18 TCGA-BF-A3DL-01 7 120385840 120385840 G A KCND2 Missense_Mutation p.E492K 0.54 deleterious_low_confidence(0.04) benign(0.229) TCGA-BF-A3DL-01 7 122634835 122634835 C T TAS2R16 Missense_Mutation p.R285K 0.18 tolerated(1) benign(0.022) TCGA-BF-A3DL-01 7 123593796 123593796 G A SPAM1 Missense_Mutation p.E58K 0.47 deleterious(0.01) probably_damaging(0.981) TCGA-BF-A3DL-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-BF-A3DL-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.45 deleterious(0) possibly_damaging(0.838) TCGA-BF-A3DL-01 7 141800675 141800675 G A MGAM Missense_Mutation p.D1754N 0.15 deleterious(0) benign(0.397) TCGA-BF-A3DL-01 7 142045297 142045297 G A TRBV4-2 5'UTR 0.27 TCGA-BF-A3DL-01 7 144288542 144288542 C T TPK1 Missense_Mutation p.E159K 0.22 tolerated(0.73) benign(0.001) TCGA-BF-A3DL-01 7 150171124 150171124 C T GIMAP8 Missense_Mutation p.S236F 0.24 tolerated(0.61) benign(0.135) TCGA-BF-A3DL-01 7 150692318 150692318 C T NOS3 Silent p.P62P 0.20 TCGA-BF-A3DL-01 7 1524809 1524809 G A INTS1 Silent p.T1062T 0.48 TCGA-BF-A3DL-01 7 15425094 15425094 C T AGMO Missense_Mutation p.E351K 0.25 tolerated(0.6) benign(0.065) TCGA-BF-A3DL-01 7 20778686 20778686 C T ABCB5 Missense_Mutation p.S983L 0.23 tolerated(0.36) benign(0.03) TCGA-BF-A3DL-01 7 2976769 2976769 C T CARD11 Missense_Mutation p.D415N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A3DL-01 7 44560626 44560626 G A NPC1L1 Silent p.F1015F 0.21 TCGA-BF-A3DL-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.19 TCGA-BF-A3DL-01 7 63538091 63538091 C T ZNF727 Missense_Mutation p.H222Y 0.22 deleterious(0.04) possibly_damaging(0.82) TCGA-BF-A3DL-01 7 64389461 64389461 G C ZNF273 3'UTR 0.37 TCGA-BF-A3DL-01 7 72849810 72849810 C T FZD9 Silent p.P491P 0.51 TCGA-BF-A3DL-01 7 81600036 81600036 C T CACNA2D1 Missense_Mutation p.R720Q 0.20 tolerated(0.45) benign(0.081) TCGA-BF-A3DL-01 7 82578913 82578913 A T PCLO Missense_Mutation p.V3664D 0.43 unknown(0) TCGA-BF-A3DL-01 7 82578914 82578914 C T PCLO Missense_Mutation p.V3664I 0.43 unknown(0) TCGA-BF-A3DL-01 7 82580115 82580115 C T PCLO Missense_Mutation p.M3263I 0.20 unknown(0) TCGA-BF-A3DL-01 7 86468162 86468162 C T GRM3 Silent p.F444F 0.32 TCGA-BF-A3DL-01 7 87178784 87178784 C A ABCB1 Missense_Mutation p.Q535H 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 7 92730924 92730924 C T SAMD9 Missense_Mutation p.G1496E 0.52 tolerated(0.18) benign(0.028) TCGA-BF-A3DL-01 7 94918016 94918016 G A PPP1R9A Missense_Mutation p.G1300R 0.16 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DL-01 7 95726867 95726867 G A DYNC1I1 Missense_Mutation p.D634N 0.29 deleterious(0) possibly_damaging(0.574) TCGA-BF-A3DL-01 7 99313390 99313390 G A CYP3A7 Missense_Mutation p.L221F 0.16 tolerated(0.24) benign(0.036) TCGA-BF-A3DL-01 7 99569492 99569492 C T AZGP1 Missense_Mutation p.G72R 0.25 deleterious(0.02) probably_damaging(1) TCGA-BF-A3DL-01 8 100287337 100287337 C T VPS13B Silent p.P893P 0.17 TCGA-BF-A3DL-01 8 104709408 104709408 A G RIMS2 Missense_Mutation p.T91A 0.16 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-BF-A3DL-01 8 105441861 105441861 C T DPYS Missense_Mutation p.E288K 0.40 tolerated(0.06) benign(0.174) TCGA-BF-A3DL-01 8 110432855 110432855 C T PKHD1L1 Missense_Mutation p.S878F 0.29 tolerated(0.06) benign(0.003) TCGA-BF-A3DL-01 8 114448956 114448956 C T CSMD3 Missense_Mutation p.G43E 0.35 tolerated_low_confidence(0.1) benign(0.002) TCGA-BF-A3DL-01 8 118170071 118170071 C G SLC30A8 Missense_Mutation p.A187G 0.29 tolerated(0.25) benign(0.015) TCGA-BF-A3DL-01 8 118811939 118811939 C T EXT1 3'UTR 0.10 TCGA-BF-A3DL-01 8 124663999 124663999 C T KLHL38 Missense_Mutation p.G390R 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A3DL-01 8 135669926 135669926 G A ZFAT Missense_Mutation p.S25L 0.14 tolerated(0.06) benign(0.338) TCGA-BF-A3DL-01 8 139165019 139165019 C T FAM135B Missense_Mutation p.E567K 0.25 deleterious(0.01) possibly_damaging(0.735) TCGA-BF-A3DL-01 8 143856634 143856634 G A LYNX1 Intron 0.27 TCGA-BF-A3DL-01 8 144462028 144462028 G A RHPN1 Silent p.R325R 0.48 TCGA-BF-A3DL-01 8 18258245 18258245 C T NAT2 Silent p.F244F 0.22 TCGA-BF-A3DL-01 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.34 TCGA-BF-A3DL-01 8 42259390 42259390 A G VDAC3 Silent p.P137P 0.21 TCGA-BF-A3DL-01 8 62212522 62212522 C T CLVS1 Missense_Mutation p.P46S 0.09 tolerated(0.12) probably_damaging(0.934) TCGA-BF-A3DL-01 8 70533306 70533306 C T SULF1 Nonsense_Mutation p.R472* 0.40 TCGA-BF-A3DL-01 8 73848172 73848172 C T KCNB2 Silent p.I194I 0.19 TCGA-BF-A3DL-01 8 75227679 75227679 G A JPH1 Missense_Mutation p.P186S 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-BF-A3DL-01 8 77618540 77618540 T A ZFHX4 Missense_Mutation p.F739L 0.18 benign(0.294) TCGA-BF-A3DL-01 9 111618064 111618064 G A ACTL7B Silent p.I49I 0.34 TCGA-BF-A3DL-01 9 113703746 113703746 G A LPAR1 Missense_Mutation p.R250W 0.39 deleterious(0) possibly_damaging(0.727) TCGA-BF-A3DL-01 9 117027750 117027750 G A COL27A1 Missense_Mutation p.E1130K 0.29 possibly_damaging(0.874) TCGA-BF-A3DL-01 9 118950233 118950233 C T PAPPA Missense_Mutation p.R406C 0.21 deleterious(0) possibly_damaging(0.689) TCGA-BF-A3DL-01 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.25 TCGA-BF-A3DL-01 9 128305419 128305419 G A MAPKAP1 Nonsense_Mutation p.Q293* 0.30 TCGA-BF-A3DL-01 9 129458773 129458773 G A LMX1B 3'UTR 0.30 TCGA-BF-A3DL-01 9 129458774 129458774 G C LMX1B 3'UTR 0.32 TCGA-BF-A3DL-01 9 133769099 133769099 G A QRFP Silent p.L43L 0.41 TCGA-BF-A3DL-01 9 135374949 135374949 C T C9orf171 Silent p.P198P 0.24 TCGA-BF-A3DL-01 9 139370631 139370631 G A SEC16A Silent p.D479D 0.25 TCGA-BF-A3DL-01 9 139635711 139635712 - T LCN10 Frame_Shift_Ins p.E121Gfs*15 0.29 TCGA-BF-A3DL-01 9 32632446 32632446 C T TAF1L Silent p.V1044V 0.41 TCGA-BF-A3DL-01 9 32633513 32633513 C T TAF1L Missense_Mutation p.D689N 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 9 35719779 35719779 G A TLN1 Silent p.T512T 0.30 TCGA-BF-A3DL-01 9 82267548 82267548 T G TLE4 Missense_Mutation p.L144R 0.27 tolerated(0.13) benign(0.036) TCGA-BF-A3DL-01 9 88881100 88881101 - TT ISCA1 Frame_Shift_Ins p.R83Kfs*11 0.18 TCGA-BF-A3DL-01 9 90502202 90502202 C T SPATA31E1 Missense_Mutation p.P934S 0.20 tolerated(0.11) benign(0.026) TCGA-BF-A3DL-01 X 100910608 100910608 C T ARMCX2 3'UTR 0.16 TCGA-BF-A3DL-01 X 102529150 102529150 C T TCEAL5 Silent p.R114R 0.15 TCGA-BF-A3DL-01 X 104512186 104512186 G A IL1RAPL2 Missense_Mutation p.G220E 0.38 deleterious(0.05) benign(0.326) TCGA-BF-A3DL-01 X 107418946 107418946 C T COL4A6 Missense_Mutation p.G924E 0.14 probably_damaging(1) TCGA-BF-A3DL-01 X 111874630 111874630 C T LHFPL1 3'UTR 0.13 TCGA-BF-A3DL-01 X 111914491 111914491 G A LHFPL1 Missense_Mutation p.S43L 0.36 tolerated(0.54) possibly_damaging(0.881) TCGA-BF-A3DL-01 X 114953364 114953364 G A RP1-241P17.4 Silent p.F62F 0.47 TCGA-BF-A3DL-01 X 115304558 115304558 G A AGTR2 Missense_Mutation p.G342E 0.32 tolerated(0.38) benign(0.034) TCGA-BF-A3DL-01 X 117032801 117032801 G A KLHL13 3'UTR 0.47 TCGA-BF-A3DL-01 X 117527156 117527156 C T WDR44 Missense_Mutation p.P250S 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.829) TCGA-BF-A3DL-01 X 118678358 118678358 C T CXorf56 Silent p.G127G 0.15 TCGA-BF-A3DL-01 X 118754005 118754005 G A SEPT6 Intron 0.11 TCGA-BF-A3DL-01 X 119389146 119389146 C T ZBTB33 Missense_Mutation p.P626S 0.24 tolerated(0.37) benign(0.002) TCGA-BF-A3DL-01 X 122769997 122769997 G A THOC2 Missense_Mutation p.R651C 0.11 deleterious(0.02) benign(0.092) TCGA-BF-A3DL-01 X 124097629 124097629 G A TENM1 5'UTR 0.20 TCGA-BF-A3DL-01 X 125685886 125685886 C T DCAF12L1 Missense_Mutation p.E236K 0.45 tolerated(0.61) benign(0.075) TCGA-BF-A3DL-01 X 12627853 12627853 G A FRMPD4 Missense_Mutation p.A58T 0.13 tolerated(0.42) benign(0.003) TCGA-BF-A3DL-01 X 129055596 129055596 C T UTP14A Intron 0.28 TCGA-BF-A3DL-01 X 138697067 138697067 C A MCF2 Missense_Mutation p.G506W 0.38 deleterious(0.01) benign(0.438) TCGA-BF-A3DL-01 X 140993623 140993623 C T MAGEC1 Nonsense_Mutation p.Q145* 0.29 TCGA-BF-A3DL-01 X 140995218 140995218 C T MAGEC1 Silent p.L676L 0.33 TCGA-BF-A3DL-01 X 140995292 140995292 G A MAGEC1 Missense_Mutation p.G701E 0.22 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-BF-A3DL-01 X 142967575 142967575 G A UBE2NL Missense_Mutation p.D125N 0.33 tolerated(0.1) benign(0.019) TCGA-BF-A3DL-01 X 149100861 149100861 G A CXorf40B Silent p.N126N 0.24 TCGA-BF-A3DL-01 X 150844513 150844513 G C PASD1 Missense_Mutation p.Q740H 0.35 deleterious_low_confidence(0) benign(0.387) TCGA-BF-A3DL-01 X 150912051 150912051 T A CNGA2 Missense_Mutation p.I359N 0.36 deleterious(0) possibly_damaging(0.878) TCGA-BF-A3DL-01 X 151997732 151997732 C T CETN2 Missense_Mutation p.M84I 0.23 tolerated(1) benign(0) TCGA-BF-A3DL-01 X 152106682 152106682 G A ZNF185 Missense_Mutation p.E427K 0.38 tolerated(0.1) benign(0.108) TCGA-BF-A3DL-01 X 19705809 19705809 C T SH3KBP1 Intron 0.17 TCGA-BF-A3DL-01 X 21550139 21550139 A T CNKSR2 Missense_Mutation p.K419N 0.10 tolerated(0.42) benign(0.348) TCGA-BF-A3DL-01 X 30237460 30237460 G A MAGEB2 Missense_Mutation p.E255K 0.19 tolerated(0.1) possibly_damaging(0.838) TCGA-BF-A3DL-01 X 30870900 30870900 G A TAB3 Missense_Mutation p.P569S 0.15 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DL-01 X 31747853 31747853 C T DMD Missense_Mutation p.D2519N 0.22 possibly_damaging(0.728) TCGA-BF-A3DL-01 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.24 deleterious(0.02) benign(0.166) TCGA-BF-A3DL-01 X 32429938 32429938 G A DMD Silent p.F1388F 0.40 TCGA-BF-A3DL-01 X 41075851 41075851 C T USP9X Nonsense_Mutation p.Q2011* 0.39 TCGA-BF-A3DL-01 X 44037711 44037711 C T EFHC2 Missense_Mutation p.M617I 0.43 tolerated(0.42) benign(0) TCGA-BF-A3DL-01 X 47307452 47307452 G A ZNF41 Missense_Mutation p.H573Y 0.19 deleterious(0) probably_damaging(0.993) TCGA-BF-A3DL-01 X 47424737 47424737 C T ARAF Missense_Mutation p.P182L 0.39 tolerated(0.09) benign(0.272) TCGA-BF-A3DL-01 X 47836055 47836055 C T ZNF182 Silent p.Q477Q 0.18 TCGA-BF-A3DL-01 X 48418190 48418190 C T TBC1D25 Silent p.A298A 0.18 TCGA-BF-A3DL-01 X 48822539 48822539 G A KCND1 Silent p.S547S 0.55 TCGA-BF-A3DL-01 X 49066156 49066156 A G CACNA1F Missense_Mutation p.F1596S 0.25 deleterious(0) possibly_damaging(0.565) TCGA-BF-A3DL-01 X 50377786 50377786 C T SHROOM4 Silent p.R429R 0.21 TCGA-BF-A3DL-01 X 51149807 51149807 C T CXorf67 5'UTR 0.50 TCGA-BF-A3DL-01 X 54159266 54159266 C T FAM120C Missense_Mutation p.D641N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DL-01 X 54360030 54360030 A G WNK3 Missense_Mutation p.V26A 0.34 tolerated(0.35) benign(0.002) TCGA-BF-A3DL-01 X 63410602 63410602 A G AMER1 Silent p.H855H 0.22 TCGA-BF-A3DL-01 X 70348501 70348501 C T MED12 Silent p.I1136I 0.15 TCGA-BF-A3DL-01 X 70511803 70511803 G A NONO Missense_Mutation p.G110E 0.29 deleterious(0) probably_damaging(0.911) TCGA-BF-A3DL-01 X 73960771 73960771 C T KIAA2022 Silent p.G1207G 0.21 TCGA-BF-A3DL-01 X 73960839 73960839 C A KIAA2022 Missense_Mutation p.G1185W 0.31 deleterious(0.01) possibly_damaging(0.839) TCGA-BF-A3DL-01 X 76937624 76937624 C T ATRX Missense_Mutation p.G1042R 0.17 benign(0.006) TCGA-BF-A3DL-01 X 77913684 77913684 C T ZCCHC5 Silent p.K78K 0.24 TCGA-BF-A3DL-01 X 78216762 78216762 G A P2RY10 Missense_Mutation p.A249T 0.45 tolerated(0.1) benign(0.039) TCGA-BF-A3DL-01 X 79286598 79286598 C T TBX22 Silent p.N517N 0.34 TCGA-BF-A3DL-01 X 79699086 79699086 C T FAM46D Nonsense_Mutation p.Q350* 0.40 TCGA-BF-A3DL-01 X 84537172 84537172 C T POF1B Intron 0.41 TCGA-BF-A3DL-01 X 9862847 9862847 C T SHROOM2 Missense_Mutation p.P300L 0.23 deleterious(0) probably_damaging(0.972) TCGA-BF-A3DM-01 10 105762077 105762077 C T SLK Missense_Mutation p.L381F 0.74 tolerated(0.53) benign(0.197) TCGA-BF-A3DM-01 10 117278814 117278814 G A ATRNL1 Silent p.Q1232Q 0.60 TCGA-BF-A3DM-01 10 123844359 123844359 C T TACC2 Missense_Mutation p.P782S 0.81 possibly_damaging(0.758) TCGA-BF-A3DM-01 10 125539746 125539746 C T CPXM2 Silent p.R305R 0.80 TCGA-BF-A3DM-01 10 134628230 134628230 G A TTC40 Silent p.I2403I 0.89 TCGA-BF-A3DM-01 10 24790364 24790364 C T KIAA1217 Missense_Mutation p.P631S 0.76 tolerated(0.17) benign(0.02) TCGA-BF-A3DM-01 10 24790365 24790365 C T KIAA1217 Missense_Mutation p.P631L 0.79 tolerated(0.14) benign(0.02) TCGA-BF-A3DM-01 10 31165976 31165976 G A ZNF438 5'UTR 0.55 TCGA-BF-A3DM-01 10 61043208 61043208 C T FAM13C Splice_Site p.X170_splice 0.83 TCGA-BF-A3DM-01 10 61832104 61832104 T G ANK3 Silent p.G2845G 0.78 TCGA-BF-A3DM-01 10 69948769 69948769 C T MYPN Silent p.I937I 0.97 TCGA-BF-A3DM-01 10 72360304 72360304 G A PRF1 Missense_Mutation p.R119W 0.80 deleterious(0) benign(0.038) TCGA-BF-A3DM-01 10 73537502 73537502 C T C10orf54 5'Flank 0.86 TCGA-BF-A3DM-01 10 73538035 73538035 C T C10orf54 5'Flank 0.80 TCGA-BF-A3DM-01 10 74034674 74034675 - G DDIT4 Frame_Shift_Ins p.A145Gfs*50 0.56 TCGA-BF-A3DM-01 10 74894309 74894309 T A ECD 3'Flank 0.80 TCGA-BF-A3DM-01 11 100141834 100141834 C T CNTN5 Silent p.I725I 0.29 TCGA-BF-A3DM-01 11 102663438 102663438 C T MMP1 Missense_Mutation p.E311K 0.44 tolerated(0.09) benign(0.022) TCGA-BF-A3DM-01 11 108382802 108382802 G A EXPH5 Silent p.T1144T 0.36 TCGA-BF-A3DM-01 11 108382803 108382803 G A EXPH5 Missense_Mutation p.T1144I 0.37 tolerated(0.19) benign(0.001) TCGA-BF-A3DM-01 11 113673914 113673914 G A USP28 Missense_Mutation p.S943F 0.43 deleterious(0) possibly_damaging(0.845) TCGA-BF-A3DM-01 11 118944615 118944615 C T VPS11 Missense_Mutation p.L397F 0.43 deleterious(0) probably_damaging(0.978) TCGA-BF-A3DM-01 11 120099802 120099802 T G OAF Missense_Mutation p.V258G 0.40 deleterious(0) probably_damaging(0.931) TCGA-BF-A3DM-01 11 123755267 123755267 C T TMEM225 Missense_Mutation p.M86I 0.34 deleterious(0.03) benign(0.322) TCGA-BF-A3DM-01 11 125618496 125618496 G A PATE1 Silent p.R83R 0.42 TCGA-BF-A3DM-01 11 128781800 128781800 G A KCNJ5 Missense_Mutation p.R211Q 0.44 deleterious(0.02) probably_damaging(1) TCGA-BF-A3DM-01 11 1467007 1467007 G A BRSK2 Missense_Mutation p.D412N 0.40 deleterious(0.01) probably_damaging(0.936) TCGA-BF-A3DM-01 11 1619212 1619212 G A KRTAP5-2 Missense_Mutation p.S90F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-BF-A3DM-01 11 18418438 18418439 - AG LDHA Frame_Shift_Ins p.T47Rfs*24 0.31 TCGA-BF-A3DM-01 11 20948884 20948884 T G NELL1 Missense_Mutation p.L264V 0.42 tolerated(0.3) probably_damaging(0.983) TCGA-BF-A3DM-01 11 26582647 26582647 T C MUC15 Missense_Mutation p.M351V 0.46 deleterious(0.02) benign(0.14) TCGA-BF-A3DM-01 11 27016220 27016220 C T FIBIN Silent p.P49P 0.36 TCGA-BF-A3DM-01 11 27077173 27077173 G A BBOX1 Missense_Mutation p.G66S 0.37 tolerated(0.77) benign(0.001) TCGA-BF-A3DM-01 11 28349661 28349661 C T METTL15 Intron 0.45 TCGA-BF-A3DM-01 11 400083 400083 C T PKP3 Missense_Mutation p.L464F 0.62 tolerated(0.11) possibly_damaging(0.649) TCGA-BF-A3DM-01 11 45832766 45832766 G A SLC35C1 Silent p.T325T 0.43 TCGA-BF-A3DM-01 11 46911653 46911653 G A LRP4 Missense_Mutation p.A645V 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 11 47834483 47834483 G A NUP160 Missense_Mutation p.P635S 0.36 tolerated(0.06) probably_damaging(0.996) TCGA-BF-A3DM-01 11 4825555 4825555 C T OR52R1 Missense_Mutation p.G19E 0.55 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 11 49831533 49831533 C T RP11-707M1.1 RNA 0.39 TCGA-BF-A3DM-01 11 51515583 51515583 G A OR4C46 Missense_Mutation p.G101E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-BF-A3DM-01 11 55322128 55322128 T G OR4C15 Missense_Mutation p.L116V 0.48 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BF-A3DM-01 11 55798206 55798206 C T OR5AS1 Silent p.F104F 0.31 TCGA-BF-A3DM-01 11 56019754 56019754 G A OR5T3 Missense_Mutation p.D27N 0.42 tolerated_low_confidence(0.36) benign(0.005) TCGA-BF-A3DM-01 11 56230698 56230698 G A OR5M9 Silent p.F60F 0.44 TCGA-BF-A3DM-01 11 56230746 56230746 G A OR5M9 Silent p.I44I 0.47 TCGA-BF-A3DM-01 11 57114648 57114648 G A P2RX3 Missense_Mutation p.G105E 0.35 tolerated(0.08) probably_damaging(1) TCGA-BF-A3DM-01 11 5905982 5905982 A T OR52E4 Missense_Mutation p.N154Y 0.49 deleterious(0.01) probably_damaging(0.934) TCGA-BF-A3DM-01 11 59620386 59620386 G A TCN1 3'UTR 0.47 TCGA-BF-A3DM-01 11 60468341 60468341 C T MS4A8 Missense_Mutation p.S3L 0.46 tolerated(0.14) benign(0.014) TCGA-BF-A3DM-01 11 60786761 60786761 G A CD6 Missense_Mutation p.D660N 0.49 deleterious(0.04) benign(0.41) TCGA-BF-A3DM-01 11 62572875 62572875 G A NXF1 5'UTR 0.53 TCGA-BF-A3DM-01 11 63137448 63137448 G A SLC22A9 5'UTR 0.50 TCGA-BF-A3DM-01 11 64504269 64504269 G A RASGRP2 Missense_Mutation p.R351W 0.12 deleterious(0.01) possibly_damaging(0.586) TCGA-BF-A3DM-01 11 64599020 64599020 G A CDC42BPG Silent p.N1087N 0.34 TCGA-BF-A3DM-01 11 64665771 64665771 G A ATG2A Missense_Mutation p.R1579C 0.55 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 11 64895939 64895939 T C SYVN1 Missense_Mutation p.E590G 0.51 tolerated(0.26) unknown(0) TCGA-BF-A3DM-01 11 65826342 65826342 C T SF3B2 Silent p.P336P 0.36 TCGA-BF-A3DM-01 11 69063249 69063249 G A MYEOV Missense_Mutation p.G111E 0.47 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BF-A3DM-01 11 69970484 69970484 G A ANO1 Missense_Mutation p.G309E 0.42 deleterious(0) benign(0.14) TCGA-BF-A3DM-01 11 74168587 74168587 C T KCNE3 Missense_Mutation p.E8K 0.36 deleterious_low_confidence(0.01) benign(0.045) TCGA-BF-A3DM-01 11 76370810 76370810 G A LRRC32 Silent p.S609S 0.50 TCGA-BF-A3DM-01 11 77377951 77377951 G A RSF1 3'UTR 0.54 TCGA-BF-A3DM-01 11 86663408 86663408 G A FZD4 Silent p.P130P 0.52 TCGA-BF-A3DM-01 11 88781089 88781089 C T GRM5 5'UTR 0.62 TCGA-BF-A3DM-01 11 94113428 94113428 C T GPR83 Missense_Mutation p.E387K 0.45 tolerated(0.11) benign(0.05) TCGA-BF-A3DM-01 12 100811847 100811847 C T SLC17A8 Silent p.A446A 0.37 TCGA-BF-A3DM-01 12 105282871 105282871 G A SLC41A2 Missense_Mutation p.H274Y 0.48 deleterious(0.03) benign(0.132) TCGA-BF-A3DM-01 12 105464438 105464438 G A ALDH1L2 Missense_Mutation p.P113L 0.32 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-BF-A3DM-01 12 113424971 113424971 G A OAS2 Silent p.G102G 0.44 TCGA-BF-A3DM-01 12 121712177 121712177 G A CAMKK2 Silent p.S51S 0.53 TCGA-BF-A3DM-01 12 124345710 124345710 G A DNAH10 Missense_Mutation p.E2183K 0.31 probably_damaging(0.99) TCGA-BF-A3DM-01 12 132400521 132400521 C T ULK1 Silent p.V565V 0.48 TCGA-BF-A3DM-01 12 15637048 15637048 G A PTPRO Silent p.E72E 0.53 TCGA-BF-A3DM-01 12 18841101 18841101 C T PLCZ1 Missense_Mutation p.D505N 0.45 deleterious(0.04) benign(0.433) TCGA-BF-A3DM-01 12 21531406 21531406 C T IAPP 3'UTR 0.50 TCGA-BF-A3DM-01 12 21954046 21954046 C T ABCC9 Missense_Mutation p.D1528N 0.54 tolerated(0.07) benign(0.394) TCGA-BF-A3DM-01 12 2778187 2778187 G C CACNA1C Missense_Mutation p.R1619T 0.40 deleterious(0) benign(0.331) TCGA-BF-A3DM-01 12 40076639 40076639 A G C12orf40 Missense_Mutation p.I305V 0.44 tolerated(0.07) possibly_damaging(0.539) TCGA-BF-A3DM-01 12 46245684 46245684 G T ARID2 Nonsense_Mutation p.E1260* 0.53 TCGA-BF-A3DM-01 12 50025193 50025193 C T PRPF40B Missense_Mutation p.P32S 0.43 tolerated_low_confidence(0.23) unknown(0) TCGA-BF-A3DM-01 12 50025194 50025194 C T PRPF40B Missense_Mutation p.P32L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-BF-A3DM-01 12 50848181 50848181 C T LARP4 Nonsense_Mutation p.R368* 0.39 TCGA-BF-A3DM-01 12 52284646 52284646 G A ANKRD33 Missense_Mutation p.D306N 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A3DM-01 12 53068894 53068894 G A KRT1 3'UTR 0.38 TCGA-BF-A3DM-01 12 53292267 53292267 C T KRT8 Silent p.T441T 0.41 TCGA-BF-A3DM-01 12 53345319 53345319 G A KRT18 Missense_Mutation p.D238N 0.59 deleterious(0.02) possibly_damaging(0.654) TCGA-BF-A3DM-01 12 54910051 54910051 G A NCKAP1L Missense_Mutation p.E324K 0.22 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DM-01 12 55615707 55615707 C T OR10A7 Missense_Mutation p.A300V 0.32 deleterious(0) probably_damaging(0.954) TCGA-BF-A3DM-01 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.40 tolerated_low_confidence(0.15) benign(0.32) TCGA-BF-A3DM-01 12 5744514 5744514 C T ANO2 Splice_Site p.X541_splice 0.40 TCGA-BF-A3DM-01 12 57857824 57857824 C T GLI1 Missense_Mutation p.S48F 0.37 deleterious(0.01) possibly_damaging(0.701) TCGA-BF-A3DM-01 12 57883717 57883717 C T MARS Silent p.A151A 0.41 TCGA-BF-A3DM-01 12 65448919 65448919 G T WIF1 Missense_Mutation p.H333N 0.43 tolerated(0.09) benign(0.013) TCGA-BF-A3DM-01 12 6979793 6979793 G A TPI1 3'UTR 0.68 TCGA-BF-A3DM-01 12 70989934 70989934 C T PTPRB Missense_Mutation p.E385K 0.36 tolerated(0.14) benign(0.03) TCGA-BF-A3DM-01 12 7177836 7177836 G A C1S Missense_Mutation p.A650T 0.38 deleterious(0.05) possibly_damaging(0.566) TCGA-BF-A3DM-01 12 72017251 72017251 G A ZFC3H1 Missense_Mutation p.P1545S 0.42 tolerated(0.08) possibly_damaging(0.87) TCGA-BF-A3DM-01 12 8377358 8377358 C T FAM90A1 Missense_Mutation p.R24Q 0.25 tolerated(1) benign(0.006) TCGA-BF-A3DM-01 12 95605014 95605014 G A FGD6 Missense_Mutation p.P16S 0.53 deleterious_low_confidence(0) unknown(0) TCGA-BF-A3DM-01 13 26923280 26923280 G A CDK8 Silent p.K92K 0.35 TCGA-BF-A3DM-01 13 26923281 26923281 G A CDK8 Missense_Mutation p.V93M 0.36 deleterious(0) probably_damaging(0.994) TCGA-BF-A3DM-01 13 43872622 43872622 G A ENOX1 Missense_Mutation p.L436F 0.49 deleterious(0.03) probably_damaging(0.998) TCGA-BF-A3DM-01 13 50057673 50057673 A T SETDB2 Missense_Mutation p.I498F 0.31 tolerated(0.16) benign(0.008) TCGA-BF-A3DM-01 13 50587148 50587148 C T TRIM13 Silent p.L361L 0.47 TCGA-BF-A3DM-01 13 76374871 76374871 G A LMO7 5'UTR 0.51 TCGA-BF-A3DM-01 13 99017671 99017671 C T FARP1 Missense_Mutation p.P100L 0.34 deleterious(0.04) possibly_damaging(0.897) TCGA-BF-A3DM-01 14 100576029 100576029 G A EVL Intron 0.26 TCGA-BF-A3DM-01 14 101407460 101407460 G T SNORD113-6 3'Flank 0.30 TCGA-BF-A3DM-01 14 102508460 102508460 C T DYNC1H1 Silent p.I4071I 0.46 TCGA-BF-A3DM-01 14 104251219 104251219 C T PPP1R13B Missense_Mutation p.E64K 0.46 deleterious(0.01) benign(0.148) TCGA-BF-A3DM-01 14 107095315 107095315 C T IGHV4-61 Nonsense_Mutation p.W55* 0.87 TCGA-BF-A3DM-01 14 19553525 19553525 G A POTEG Missense_Mutation p.G37R 0.11 tolerated_low_confidence(0.07) benign(0.029) TCGA-BF-A3DM-01 14 19559070 19559070 G A POTEG Missense_Mutation p.G239E 0.23 deleterious(0.01) probably_damaging(1) TCGA-BF-A3DM-01 14 20020112 20020112 C T POTEM Missense_Mutation p.G37R 0.23 tolerated_low_confidence(0.06) benign(0.182) TCGA-BF-A3DM-01 14 23282555 23282555 G A SLC7A7 Missense_Mutation p.S18F 0.40 deleterious(0.01) benign(0.078) TCGA-BF-A3DM-01 14 26939671 26939671 C T NOVA1 Intron 0.42 TCGA-BF-A3DM-01 14 52472502 52472502 C T NID2 Missense_Mutation p.R1357Q 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-BF-A3DM-01 14 67579881 67579881 G A GPHN Missense_Mutation p.G540E 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 14 67610133 67610133 C T GPHN Silent p.I601I 0.41 TCGA-BF-A3DM-01 14 70633531 70633531 C T SLC8A3 Missense_Mutation p.D537N 0.57 tolerated(0.4) benign(0.008) TCGA-BF-A3DM-01 14 71524350 71524350 C T PCNX Silent p.I1587I 0.46 TCGA-BF-A3DM-01 14 72941376 72941376 G A RGS6 Missense_Mutation p.R221Q 0.32 tolerated(0.33) benign(0.136) TCGA-BF-A3DM-01 14 74402747 74402747 C T FAM161B Silent p.L633L 0.42 TCGA-BF-A3DM-01 14 91655311 91655311 C T C14orf159 Missense_Mutation p.S331L 0.54 deleterious(0.02) benign(0.249) TCGA-BF-A3DM-01 14 92076928 92076928 G A CATSPERB Missense_Mutation p.L832F 0.40 tolerated(0.24) benign(0.064) TCGA-BF-A3DM-01 14 92909097 92909097 C T SLC24A4 Silent p.I173I 0.34 TCGA-BF-A3DM-01 14 94517719 94517719 G A DDX24 Silent p.L800L 0.45 TCGA-BF-A3DM-01 14 94845676 94845676 G A SERPINA1 Intron 0.50 TCGA-BF-A3DM-01 14 96707571 96707571 C T BDKRB2 Silent p.S302S 0.18 TCGA-BF-A3DM-01 14 99183583 99183583 G A C14orf177 Missense_Mutation p.G117E 0.33 tolerated_low_confidence(0.87) benign(0) TCGA-BF-A3DM-01 14 99641932 99641932 G A BCL11B Missense_Mutation p.P414L 0.67 tolerated(0.05) benign(0.035) TCGA-BF-A3DM-01 15 102292727 102292727 A T DNM1P47 RNA 0.45 TCGA-BF-A3DM-01 15 20649568 20649568 C T HERC2P3 RNA 0.22 TCGA-BF-A3DM-01 15 25207350 25207350 A G SNURF Missense_Mutation p.N35S 0.44 tolerated_low_confidence(0.1) benign(0.012) TCGA-BF-A3DM-01 15 26825509 26825509 G A GABRB3 Silent p.I213I 0.40 TCGA-BF-A3DM-01 15 40864065 40864065 C T RPUSD2 Missense_Mutation p.S290F 0.45 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 15 44900701 44900701 G A SPG11 Missense_Mutation p.P1132S 0.35 deleterious(0.05) probably_damaging(0.932) TCGA-BF-A3DM-01 15 45253724 45253724 T C C15orf43 Missense_Mutation p.I97T 0.48 deleterious(0) possibly_damaging(0.607) TCGA-BF-A3DM-01 15 50330995 50330995 T A ATP8B4 Missense_Mutation p.N111I 0.38 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 15 62539252 62539252 C T AC126323.1 5'Flank 0.39 TCGA-BF-A3DM-01 15 64005849 64005849 A T HERC1 Missense_Mutation p.F1389Y 0.45 possibly_damaging(0.714) TCGA-BF-A3DM-01 15 64455253 64455253 G A PPIB 5'UTR 0.33 TCGA-BF-A3DM-01 15 79058703 79058703 G A ADAMTS7 Silent p.L1184L 0.45 TCGA-BF-A3DM-01 15 79755513 79755513 C T KIAA1024 Silent p.S801S 0.44 TCGA-BF-A3DM-01 15 85411669 85411669 G A ALPK3 Silent p.K1902K 0.46 TCGA-BF-A3DM-01 15 88420080 88420080 G A NTRK3 3'UTR 0.39 TCGA-BF-A3DM-01 15 88669548 88669548 G A NTRK3 Silent p.F450F 0.28 TCGA-BF-A3DM-01 15 99671446 99671446 C T SYNM Missense_Mutation p.P960S 0.36 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 15 99671447 99671447 C T SYNM Missense_Mutation p.P960L 0.38 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 16 1129256 1129256 C T SSTR5 Silent p.L130L 0.28 TCGA-BF-A3DM-01 16 1570724 1570724 G A IFT140 Missense_Mutation p.S1180F 0.46 tolerated(0.11) benign(0.022) TCGA-BF-A3DM-01 16 20566602 20566602 C T ACSM2B Silent p.K195K 0.39 TCGA-BF-A3DM-01 16 20635466 20635466 C T ACSM1 Silent p.L533L 0.47 TCGA-BF-A3DM-01 16 20975440 20975440 C T DNAH3 Missense_Mutation p.D3256N 0.52 deleterious(0.05) possibly_damaging(0.649) TCGA-BF-A3DM-01 16 20975441 20975441 C T DNAH3 Silent p.E3255E 0.50 TCGA-BF-A3DM-01 16 2154633 2154633 C A PKD1 Missense_Mutation p.R2676M 0.28 benign(0.261) TCGA-BF-A3DM-01 16 22151497 22151497 G A VWA3A Missense_Mutation p.R772K 0.25 tolerated(0.36) benign(0.007) TCGA-BF-A3DM-01 16 23569288 23569288 A G UBFD1 Missense_Mutation p.M15V 0.57 deleterious_low_confidence(0.01) benign(0.292) TCGA-BF-A3DM-01 16 24804818 24804818 C T TNRC6A Missense_Mutation p.P1067L 0.41 deleterious(0) possibly_damaging(0.542) TCGA-BF-A3DM-01 16 27480849 27480849 C T GTF3C1 Missense_Mutation p.E1613K 0.43 deleterious(0.02) possibly_damaging(0.51) TCGA-BF-A3DM-01 16 28855302 28855302 G A TUFM Missense_Mutation p.S348F 0.41 deleterious(0) probably_damaging(0.924) TCGA-BF-A3DM-01 16 28914167 28914167 C T ATP2A1 Silent p.A893A 0.41 TCGA-BF-A3DM-01 16 29811294 29811294 C T KIF22 Missense_Mutation p.A402V 0.28 tolerated(0.16) benign(0.146) TCGA-BF-A3DM-01 16 29811295 29811295 C T KIF22 Silent p.A402A 0.28 TCGA-BF-A3DM-01 16 3063628 3063628 C T CLDN9 Silent p.L89L 0.42 TCGA-BF-A3DM-01 16 3065797 3065797 C T CLDN6 Missense_Mutation p.D76N 0.40 deleterious(0) possibly_damaging(0.898) TCGA-BF-A3DM-01 16 30748473 30748473 C T SRCAP Missense_Mutation p.S2371F 0.43 possibly_damaging(0.732) TCGA-BF-A3DM-01 16 50745604 50745604 G A NOD2 Silent p.G594G 0.67 TCGA-BF-A3DM-01 16 54966458 54966458 C T IRX5 Missense_Mutation p.H100Y 0.69 deleterious(0) probably_damaging(0.986) TCGA-BF-A3DM-01 16 57060508 57060508 C G NLRC5 Silent p.T551T 0.82 TCGA-BF-A3DM-01 16 66426129 66426129 G A CDH5 Missense_Mutation p.G354R 0.87 tolerated(0.16) benign(0.004) TCGA-BF-A3DM-01 16 66976133 66976133 C T CES2 Silent p.L485L 0.74 TCGA-BF-A3DM-01 16 67038035 67038035 G T CES4A Missense_Mutation p.D330Y 0.05 tolerated(0.23) benign(0.07) TCGA-BF-A3DM-01 16 67272111 67272111 G A FHOD1 Missense_Mutation p.L181F 0.88 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A3DM-01 16 74719433 74719433 G A MLKL Silent p.F257F 0.85 TCGA-BF-A3DM-01 16 75669983 75669983 C T KARS Missense_Mutation p.E194K 0.78 tolerated(0.1) benign(0.334) TCGA-BF-A3DM-01 16 80654731 80654731 A T CDYL2 Missense_Mutation p.D312E 0.85 tolerated(0.1) benign(0.058) TCGA-BF-A3DM-01 16 87874041 87874041 G A SLC7A5 Missense_Mutation p.P270L 0.81 deleterious(0) possibly_damaging(0.558) TCGA-BF-A3DM-01 17 10400457 10400457 C T MYH1 Missense_Mutation p.E1529K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A3DM-01 17 10401105 10401105 C T MYH1 Silent p.E1437E 0.33 TCGA-BF-A3DM-01 17 12877444 12877444 G A ARHGAP44 Missense_Mutation p.R527Q 0.38 deleterious(0.02) possibly_damaging(0.638) TCGA-BF-A3DM-01 17 1564010 1564010 C A PRPF8 Silent p.P1540P 0.42 TCGA-BF-A3DM-01 17 17750835 17750835 G A TOM1L2 3'UTR 0.38 TCGA-BF-A3DM-01 17 18286458 18286458 G A EVPLL Missense_Mutation p.D211N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 17 2381097 2381097 G A METTL16 Missense_Mutation p.P71S 0.40 deleterious(0) probably_damaging(0.996) TCGA-BF-A3DM-01 17 26114749 26114749 G A NOS2 Missense_Mutation p.P141L 0.38 tolerated(0.2) probably_damaging(0.98) TCGA-BF-A3DM-01 17 27065145 27065145 C T NEK8 Silent p.L368L 0.40 TCGA-BF-A3DM-01 17 30325845 30325845 C T SUZ12 Silent p.L681L 0.46 TCGA-BF-A3DM-01 17 33448814 33448814 C T FNDC8 Silent p.P34P 0.43 TCGA-BF-A3DM-01 17 34071983 34071983 C T GAS2L2 Missense_Mutation p.E845K 0.39 tolerated(1) benign(0) TCGA-BF-A3DM-01 17 39118534 39118534 C T KRT39 Silent p.E292E 0.32 TCGA-BF-A3DM-01 17 39552737 39552737 C T KRT31 Missense_Mutation p.D175N 0.45 deleterious(0.03) probably_damaging(1) TCGA-BF-A3DM-01 17 39670283 39670283 C T KRT15 Missense_Mutation p.E455K 0.45 deleterious(0.03) benign(0.37) TCGA-BF-A3DM-01 17 40043946 40043946 A C ACLY Missense_Mutation p.I594S 0.38 deleterious(0.01) possibly_damaging(0.888) TCGA-BF-A3DM-01 17 40937126 40937126 G A WNK4 Silent p.P394P 0.35 TCGA-BF-A3DM-01 17 41345501 41345501 C T NBR1 Missense_Mutation p.S457F 0.38 deleterious(0) possibly_damaging(0.878) TCGA-BF-A3DM-01 17 41832725 41832725 C T SOST Silent p.L209L 0.44 TCGA-BF-A3DM-01 17 42759406 42759406 G A CCDC43 Silent p.L131L 0.34 TCGA-BF-A3DM-01 17 42882577 42882577 G A GJC1 Silent p.V203V 0.49 TCGA-BF-A3DM-01 17 4686150 4686150 G A TM4SF5 Missense_Mutation p.G133R 0.48 deleterious(0) possibly_damaging(0.877) TCGA-BF-A3DM-01 17 48741464 48741464 C T ABCC3 Missense_Mutation p.L444F 0.47 deleterious(0) probably_damaging(0.993) TCGA-BF-A3DM-01 17 5425071 5425071 G A NLRP1 Missense_Mutation p.H1186Y 0.52 deleterious(0.02) probably_damaging(1) TCGA-BF-A3DM-01 17 57287876 57287876 C T SMG8 Missense_Mutation p.S155F 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-BF-A3DM-01 17 62019286 62019286 C T SCN4A Silent p.L1452L 0.35 TCGA-BF-A3DM-01 17 66925201 66925201 C T ABCA8 Missense_Mutation p.G372R 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 17 68171981 68171981 C T KCNJ2 Silent p.I267I 0.40 TCGA-BF-A3DM-01 17 73571075 73571075 C T LLGL2 3'UTR 0.58 TCGA-BF-A3DM-01 17 76089202 76089202 C T TNRC6C Missense_Mutation p.P1384S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 17 7611307 7611307 C T EFNB3 Missense_Mutation p.P52S 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 17 76557901 76557901 C T DNAH17 Silent p.L577L 0.20 TCGA-BF-A3DM-01 17 7720727 7720727 C T DNAH2 Silent p.I3338I 0.42 TCGA-BF-A3DM-01 17 7749407 7749407 C T KDM6B Missense_Mutation p.P83L 0.29 unknown(0) TCGA-BF-A3DM-01 17 78073640 78073640 G A CCDC40 3'UTR 0.29 TCGA-BF-A3DM-01 17 7917254 7917254 G A GUCY2D Missense_Mutation p.D774N 0.43 tolerated(0.07) probably_damaging(1) TCGA-BF-A3DM-01 17 80320315 80320315 G A TEX19 Missense_Mutation p.A97T 0.50 tolerated(0.63) benign(0.167) TCGA-BF-A3DM-01 18 25616531 25616531 C T CDH2 Intron 0.93 TCGA-BF-A3DM-01 18 48327755 48327755 C T MRO Silent p.L197L 0.89 TCGA-BF-A3DM-01 18 56034976 56034976 A G NEDD4L Splice_Site p.X688_splice 0.11 TCGA-BF-A3DM-01 18 56205006 56205006 C T ALPK2 Missense_Mutation p.E805K 0.87 tolerated(0.05) benign(0.342) TCGA-BF-A3DM-01 18 56819810 56819810 C T SEC11C Silent p.F80F 0.85 TCGA-BF-A3DM-01 19 10419147 10419147 G A ZGLP1 Missense_Mutation p.P71S 0.53 deleterious(0.05) benign(0.346) TCGA-BF-A3DM-01 19 14513431 14513431 C T CD97 Silent p.L402L 0.43 TCGA-BF-A3DM-01 19 1487294 1487294 C T PCSK4 Missense_Mutation p.G234D 0.25 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 19 15164655 15164655 G A CASP14 Missense_Mutation p.G97R 0.34 deleterious(0.01) probably_damaging(1) TCGA-BF-A3DM-01 19 15852266 15852266 C T OR10H3 Nonsense_Mutation p.Q22* 0.42 TCGA-BF-A3DM-01 19 16875922 16875922 C T NWD1 Missense_Mutation p.P777S 0.35 deleterious(0.05) benign(0.284) TCGA-BF-A3DM-01 19 17081811 17081811 C T CPAMD8 Silent p.V748V 0.38 TCGA-BF-A3DM-01 19 22364058 22364058 G A ZNF676 Missense_Mutation p.S154L 0.43 tolerated(0.17) probably_damaging(0.991) TCGA-BF-A3DM-01 19 35849900 35849900 G A FFAR3 Silent p.L36L 0.21 TCGA-BF-A3DM-01 19 35849945 35849945 C T FFAR3 Silent p.D51D 0.21 TCGA-BF-A3DM-01 19 3762731 3762731 G A MRPL54 Silent p.R11R 0.44 TCGA-BF-A3DM-01 19 38876802 38876802 T C GGN Missense_Mutation p.N367S 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-BF-A3DM-01 19 40362865 40362865 G A FCGBP Missense_Mutation p.P5069S 0.39 probably_damaging(0.999) TCGA-BF-A3DM-01 19 41622449 41622449 C T CYP2F1 Silent p.A87A 0.33 TCGA-BF-A3DM-01 19 4306272 4306272 A C FSD1 Missense_Mutation p.E63D 0.43 tolerated(0.07) benign(0.012) TCGA-BF-A3DM-01 19 43358463 43358463 G A PSG10P RNA 0.42 TCGA-BF-A3DM-01 19 43575870 43575870 A T PSG2 Missense_Mutation p.L316M 0.41 tolerated(0.08) benign(0.023) TCGA-BF-A3DM-01 19 4491608 4491608 C T HDGFRP2 Nonsense_Mutation p.Q179* 0.46 TCGA-BF-A3DM-01 19 44934301 44934301 C T ZNF229 Missense_Mutation p.D219N 0.42 tolerated(0.49) benign(0.002) TCGA-BF-A3DM-01 19 46815879 46815879 G A HIF3A Missense_Mutation p.E332K 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A3DM-01 19 47983154 47983154 G A KPTN Silent p.S251S 0.32 TCGA-BF-A3DM-01 19 50957300 50957300 G A MYBPC2 Silent p.R591R 0.35 TCGA-BF-A3DM-01 19 50958463 50958463 G A MYBPC2 Missense_Mutation p.E705K 0.43 deleterious(0) probably_damaging(0.977) TCGA-BF-A3DM-01 19 51412513 51412513 G A KLK4 Silent p.F73F 0.44 TCGA-BF-A3DM-01 19 53472947 53472947 A G ZNF702P RNA 0.28 TCGA-BF-A3DM-01 19 55142732 55142732 G A LILRB1 Silent p.L15L 0.39 TCGA-BF-A3DM-01 19 55594839 55594839 G A EPS8L1 Nonsense_Mutation p.W436* 0.25 TCGA-BF-A3DM-01 19 55594840 55594840 G A EPS8L1 Missense_Mutation p.E437K 0.25 deleterious(0) possibly_damaging(0.838) TCGA-BF-A3DM-01 19 56423608 56423608 G A NLRP13 Silent p.I525I 0.43 TCGA-BF-A3DM-01 19 56466597 56466597 C T NLRP8 Silent p.S391S 0.35 TCGA-BF-A3DM-01 19 58483850 58483850 C T C19orf18 Missense_Mutation p.M83I 0.43 tolerated(0.39) benign(0.001) TCGA-BF-A3DM-01 19 7174618 7174618 G A INSR Silent p.L367L 0.44 TCGA-BF-A3DM-01 19 9049537 9049537 G A MUC16 Silent p.I10698I 0.44 TCGA-BF-A3DM-01 19 9064721 9064721 G A MUC16 Silent p.S7575S 0.35 TCGA-BF-A3DM-01 19 9066184 9066184 G A MUC16 Missense_Mutation p.P7088S 0.47 unknown(0) TCGA-BF-A3DM-01 19 9066520 9066520 G A MUC16 Missense_Mutation p.P6976S 0.47 unknown(0) TCGA-BF-A3DM-01 1 10363998 10363998 C T KIF1B Intron 0.41 TCGA-BF-A3DM-01 1 1115645 1115645 G A TTLL10 Missense_Mutation p.G144E 0.44 tolerated_low_confidence(1) benign(0.005) TCGA-BF-A3DM-01 1 1119445 1119445 G A TTLL10 Missense_Mutation p.D412N 0.44 tolerated(0.12) probably_damaging(0.954) TCGA-BF-A3DM-01 1 12164572 12164572 G A TNFRSF8 Missense_Mutation p.M135I 0.63 tolerated(0.08) benign(0.297) TCGA-BF-A3DM-01 1 12785975 12785975 C T AADACL3 3'Flank 0.41 TCGA-BF-A3DM-01 1 12887493 12887493 C T PRAMEF11 Missense_Mutation p.E122K 0.43 tolerated(0.26) possibly_damaging(0.631) TCGA-BF-A3DM-01 1 12907852 12907852 C T HNRNPCL1 Silent p.V97V 0.11 TCGA-BF-A3DM-01 1 12943102 12943102 G A PRAMEF4 Silent p.F38F 0.36 TCGA-BF-A3DM-01 1 145539064 145539064 C T ITGA10 Silent p.L1002L 0.52 TCGA-BF-A3DM-01 1 151508126 151508126 C T CGN Silent p.D1015D 0.56 TCGA-BF-A3DM-01 1 151508776 151508776 C T CGN Silent p.I1087I 0.56 TCGA-BF-A3DM-01 1 152383335 152383335 G A CRNN Silent p.L75L 0.60 TCGA-BF-A3DM-01 1 152884110 152884110 C T IVL 3'UTR 0.41 TCGA-BF-A3DM-01 1 153905117 153905117 C T DENND4B Splice_Site p.X1253_splice 0.47 TCGA-BF-A3DM-01 1 154544028 154544028 C T CHRNB2 Silent p.I243I 0.31 TCGA-BF-A3DM-01 1 155110084 155110084 G A SLC50A1 Silent p.L110L 0.27 TCGA-BF-A3DM-01 1 158058232 158058232 G A KIRREL Silent p.K344K 0.26 TCGA-BF-A3DM-01 1 158517650 158517650 G A OR6Y1 Silent p.I82I 0.36 TCGA-BF-A3DM-01 1 158587365 158587365 C T SPTA1 Missense_Mutation p.E2188K 0.62 deleterious(0.05) possibly_damaging(0.805) TCGA-BF-A3DM-01 1 158644451 158644451 G T SPTA1 Nonsense_Mutation p.S376* 0.54 TCGA-BF-A3DM-01 1 159283485 159283485 G A OR10J3 Missense_Mutation p.S322F 0.52 deleterious_low_confidence(0) benign(0.003) TCGA-BF-A3DM-01 1 159850480 159850480 C T CCDC19 Missense_Mutation p.R303Q 0.47 tolerated(0.32) benign(0.023) TCGA-BF-A3DM-01 1 159912814 159912814 G A IGSF9 Silent p.F62F 0.47 TCGA-BF-A3DM-01 1 160340779 160340779 C T NHLH1 Silent p.I86I 0.48 TCGA-BF-A3DM-01 1 161276155 161276155 C T MPZ Nonsense_Mutation p.W183* 0.43 TCGA-BF-A3DM-01 1 162344172 162344172 C T C1orf111 Missense_Mutation p.R151Q 0.57 tolerated(0.25) benign(0.024) TCGA-BF-A3DM-01 1 165652225 165652225 G A ALDH9A1 Silent p.S150S 0.63 TCGA-BF-A3DM-01 1 169390724 169390724 C T CCDC181 Silent p.G315G 0.57 TCGA-BF-A3DM-01 1 179603749 179603749 A T TDRD5 Silent p.V428V 0.57 TCGA-BF-A3DM-01 1 183914772 183914772 T C COLGALT2 Intron 0.44 TCGA-BF-A3DM-01 1 185988675 185988675 C T HMCN1 Missense_Mutation p.P1825S 0.27 probably_damaging(0.995) TCGA-BF-A3DM-01 1 19181164 19181164 C T TAS1R2 Missense_Mutation p.S267N 0.32 tolerated(0.07) benign(0.443) TCGA-BF-A3DM-01 1 196712740 196712740 G A CFH Missense_Mutation p.E1098K 0.30 tolerated(0.18) possibly_damaging(0.527) TCGA-BF-A3DM-01 1 197297909 197297909 G A CRB1 Missense_Mutation p.R143K 0.30 tolerated(0.86) benign(0.02) TCGA-BF-A3DM-01 1 200881061 200881061 C T C1orf106 Silent p.I480I 0.46 TCGA-BF-A3DM-01 1 201777224 201777224 T C NAV1 Silent p.A1264A 0.30 TCGA-BF-A3DM-01 1 215987181 215987181 G A USH2A Silent p.I3212I 0.57 TCGA-BF-A3DM-01 1 227842737 227842737 G A ZNF678 Silent p.E262E 0.47 TCGA-BF-A3DM-01 1 228476428 228476428 G A OBSCN Nonsense_Mutation p.W3822* 0.24 TCGA-BF-A3DM-01 1 233482282 233482282 C T MLK4 Silent p.T300T 0.51 TCGA-BF-A3DM-01 1 235866215 235866215 G A LYST Silent p.T3402T 0.52 TCGA-BF-A3DM-01 1 235866216 235866216 G A LYST Missense_Mutation p.T3402I 0.52 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DM-01 1 236212073 236212073 G A NID1 Nonsense_Mutation p.Q148* 0.37 TCGA-BF-A3DM-01 1 240256724 240256724 C T FMN2 Nonsense_Mutation p.Q439* 0.53 TCGA-BF-A3DM-01 1 248570095 248570095 C T OR2T1 Missense_Mutation p.S267F 0.58 deleterious(0.01) possibly_damaging(0.582) TCGA-BF-A3DM-01 1 248685000 248685000 C T OR2G6 Missense_Mutation p.S18L 0.52 deleterious(0) possibly_damaging(0.901) TCGA-BF-A3DM-01 1 248814044 248814044 G A OR2T27 Missense_Mutation p.L48F 0.20 deleterious(0) probably_damaging(0.989) TCGA-BF-A3DM-01 1 26772844 26772844 C T DHDDS Silent p.L121L 0.44 TCGA-BF-A3DM-01 1 27238471 27238471 G A NR0B2 Silent p.R213R 0.33 TCGA-BF-A3DM-01 1 28206306 28206306 C T THEMIS2 Silent p.L129L 0.56 TCGA-BF-A3DM-01 1 33625512 33625512 C T TRIM62 Missense_Mutation p.E180K 0.35 tolerated(0.67) benign(0.058) TCGA-BF-A3DM-01 1 34285366 34285366 C T CSMD2 Missense_Mutation p.M384I 0.54 tolerated(0.28) benign(0.158) TCGA-BF-A3DM-01 1 35223414 35223414 G A GJB5 Silent p.V161V 0.53 TCGA-BF-A3DM-01 1 38025047 38025047 G A DNALI1 Missense_Mutation p.R138K 0.41 tolerated(0.06) possibly_damaging(0.848) TCGA-BF-A3DM-01 1 38227753 38227753 C T EPHA10 Nonsense_Mutation p.W58* 0.44 TCGA-BF-A3DM-01 1 40366904 40366904 C A MYCL Missense_Mutation p.C98F 0.50 tolerated(0.89) benign(0.33) TCGA-BF-A3DM-01 1 43200781 43200781 G A CLDN19 Silent p.S217S 0.52 TCGA-BF-A3DM-01 1 43613744 43613744 C T FAM183A Missense_Mutation p.P41L 0.27 deleterious(0) probably_damaging(0.909) TCGA-BF-A3DM-01 1 43870123 43870123 C T SZT2 Missense_Mutation p.R134W 0.39 deleterious(0) benign(0.401) TCGA-BF-A3DM-01 1 44468264 44468264 G A SLC6A9 Missense_Mutation p.R333C 0.28 deleterious(0) probably_damaging(0.993) TCGA-BF-A3DM-01 1 47364537 47364537 G A CYP4Z2P RNA 0.27 TCGA-BF-A3DM-01 1 48694632 48694632 G A SLC5A9 Intron 0.54 TCGA-BF-A3DM-01 1 53608038 53608038 G A SLC1A7 Silent p.I28I 0.44 TCGA-BF-A3DM-01 1 6653669 6653669 G A KLHL21 Missense_Mutation p.S517F 0.44 tolerated(0.18) probably_damaging(0.992) TCGA-BF-A3DM-01 1 68910338 68910338 C T RPE65 Missense_Mutation p.R124Q 0.36 tolerated(0.48) benign(0.01) TCGA-BF-A3DM-01 1 71318407 71318407 G A PTGER3 3'UTR 0.28 TCGA-BF-A3DM-01 1 75055435 75055435 C T C1orf173 Missense_Mutation p.E686K 0.33 tolerated(0.23) benign(0.059) TCGA-BF-A3DM-01 1 7798376 7798376 C T CAMTA1 Missense_Mutation p.P1339L 0.31 tolerated_low_confidence(0.47) benign(0.085) TCGA-BF-A3DM-01 1 85279853 85279853 C T LPAR3 Silent p.G246G 0.51 TCGA-BF-A3DM-01 1 87031503 87031503 G A CLCA4 Missense_Mutation p.E252K 0.15 tolerated(0.56) benign(0.079) TCGA-BF-A3DM-01 1 888572 888572 G A NOC2L Missense_Mutation p.L329F 0.49 deleterious(0) probably_damaging(0.978) TCGA-BF-A3DM-01 1 9416185 9416185 C T SPSB1 Missense_Mutation p.P79S 0.49 deleterious(0) probably_damaging(0.973) TCGA-BF-A3DM-01 1 97981281 97981281 C T DPYD Splice_Site p.X580_splice 0.55 TCGA-BF-A3DM-01 20 18143485 18143485 G A CSRP2BP Missense_Mutation p.D523N 0.41 tolerated(0.65) benign(0.119) TCGA-BF-A3DM-01 20 18165328 18165328 C T CSRP2BP Silent p.F689F 0.50 TCGA-BF-A3DM-01 20 23586502 23586502 G A CST9 5'UTR 0.40 TCGA-BF-A3DM-01 20 30584465 30584465 G A XKR7 Silent p.L315L 0.27 TCGA-BF-A3DM-01 20 30789802 30789802 G A PLAGL2 Silent p.L60L 0.42 TCGA-BF-A3DM-01 20 31805372 31805372 C T BPIFA3 Silent p.I10I 0.38 TCGA-BF-A3DM-01 20 32379235 32379235 C T ZNF341 Missense_Mutation p.S819F 0.45 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-BF-A3DM-01 20 34081376 34081376 G A CEP250 Missense_Mutation p.D1004N 0.46 benign(0.012) TCGA-BF-A3DM-01 20 35425314 35425314 T C SOGA1 Silent p.E1151E 0.35 TCGA-BF-A3DM-01 20 3782450 3782450 G C CDC25B Splice_Site p.X307_splice 0.46 TCGA-BF-A3DM-01 20 43255108 43255108 C T ADA Nonsense_Mutation p.W117* 0.53 TCGA-BF-A3DM-01 20 43882350 43882350 G A SLPI Missense_Mutation p.P37L 0.41 tolerated(0.65) benign(0.315) TCGA-BF-A3DM-01 20 45362478 45362478 T A SLC2A10 3'UTR 0.44 TCGA-BF-A3DM-01 20 51871276 51871276 G A TSHZ2 Missense_Mutation p.E427K 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-BF-A3DM-01 20 57036205 57036205 C T APCDD1L Missense_Mutation p.G383R 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-BF-A3DM-01 20 57290271 57290271 C T NPEPL1 Silent p.F487F 0.40 TCGA-BF-A3DM-01 20 61946769 61946769 C T COL20A1 Silent p.L834L 0.35 TCGA-BF-A3DM-01 20 62292755 62292755 C T RTEL1 Silent p.A69A 0.37 TCGA-BF-A3DM-01 21 19698756 19698756 C T TMPRSS15 Silent p.G638G 0.42 TCGA-BF-A3DM-01 21 32582405 32582405 G C TIAM1 Missense_Mutation p.R782G 0.44 deleterious(0) benign(0.326) TCGA-BF-A3DM-01 21 33074171 33074171 G A SCAF4 Missense_Mutation p.S173F 0.38 probably_damaging(0.983) TCGA-BF-A3DM-01 21 35821823 35821823 C T KCNE1 Missense_Mutation p.S37N 0.46 tolerated(0.25) benign(0.001) TCGA-BF-A3DM-01 21 40604406 40604406 G A BRWD1 Missense_Mutation p.P929S 0.51 tolerated(0.11) benign(0.073) TCGA-BF-A3DM-01 21 41561041 41561041 G A DSCAM Silent p.I827I 0.38 TCGA-BF-A3DM-01 21 43802292 43802292 C T TMPRSS3 Silent p.L278L 0.29 TCGA-BF-A3DM-01 21 43802299 43802299 G A TMPRSS3 Missense_Mutation p.S276F 0.28 deleterious(0.03) possibly_damaging(0.601) TCGA-BF-A3DM-01 21 43816172 43816172 G A TMPRSS3 5'UTR 0.43 TCGA-BF-A3DM-01 21 45821640 45821640 C T TRPM2 Missense_Mutation p.H800Y 0.44 tolerated(0.86) benign(0.002) TCGA-BF-A3DM-01 21 46047084 46047084 C T KRTAP10-9 5'UTR 0.37 TCGA-BF-A3DM-01 21 46078006 46078006 C T KRTAP12-3 Missense_Mutation p.P37L 0.37 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 21 46078007 46078007 C T KRTAP12-3 Silent p.P37P 0.36 TCGA-BF-A3DM-01 22 17265006 17265006 C T XKR3 Missense_Mutation p.E295K 0.28 tolerated(0.11) possibly_damaging(0.874) TCGA-BF-A3DM-01 22 17590562 17590562 A C IL17RA Missense_Mutation p.E818A 0.33 deleterious(0.02) benign(0.166) TCGA-BF-A3DM-01 22 18370137 18370137 G A MICAL3 Silent p.S652S 0.44 TCGA-BF-A3DM-01 22 19776423 19776423 G A GNB1L Missense_Mutation p.R265C 0.46 tolerated(0.06) benign(0.035) TCGA-BF-A3DM-01 22 25272586 25272586 C T SGSM1 Missense_Mutation p.S500F 0.47 tolerated(0.47) benign(0.078) TCGA-BF-A3DM-01 22 26164992 26164992 G A MYO18B Missense_Mutation p.R370K 0.26 tolerated_low_confidence(0.93) benign(0.012) TCGA-BF-A3DM-01 22 26422479 26422479 C T MYO18B Missense_Mutation p.T2180I 0.49 tolerated(0.4) benign(0.095) TCGA-BF-A3DM-01 22 31600560 31600560 C T RNF185 Silent p.L189L 0.40 TCGA-BF-A3DM-01 22 31663018 31663018 C T LIMK2 Nonsense_Mutation p.R343* 0.41 TCGA-BF-A3DM-01 22 32498182 32498182 C T SLC5A1 Silent p.I541I 0.34 TCGA-BF-A3DM-01 22 32924957 32924957 C T SYN3 Silent p.V378V 0.43 TCGA-BF-A3DM-01 22 36661890 36661890 G A APOL1 Silent p.T352T 0.40 TCGA-BF-A3DM-01 22 36680290 36680290 G A MYH9 Silent p.L1872L 0.31 TCGA-BF-A3DM-01 22 40257788 40257788 C T ENTHD1 Missense_Mutation p.G192R 0.49 deleterious(0) benign(0.26) TCGA-BF-A3DM-01 22 44681376 44681376 C T KIAA1644 Silent p.Q177Q 0.52 TCGA-BF-A3DM-01 22 46627847 46627847 C T PPARA Silent p.F290F 0.56 TCGA-BF-A3DM-01 22 50472774 50472774 C T TTLL8 Intron 0.35 TCGA-BF-A3DM-01 22 50552817 50552817 G A MOV10L1 Missense_Mutation p.G298R 0.41 deleterious(0.02) probably_damaging(1) TCGA-BF-A3DM-01 2 107021548 107021548 G A RGPD3 3'UTR 0.46 TCGA-BF-A3DM-01 2 118688722 118688722 T C CCDC93 Missense_Mutation p.E578G 0.42 deleterious(0.04) benign(0.104) TCGA-BF-A3DM-01 2 131520881 131520881 C T AMER3 Silent p.F412F 0.53 TCGA-BF-A3DM-01 2 135738568 135738568 G A MAP3K19 Missense_Mutation p.S1248L 0.51 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 2 135744092 135744092 G A MAP3K19 Missense_Mutation p.H784Y 0.42 deleterious(0.01) benign(0.177) TCGA-BF-A3DM-01 2 135744095 135744095 T A MAP3K19 Missense_Mutation p.I783F 0.41 tolerated(0.36) benign(0.135) TCGA-BF-A3DM-01 2 166011006 166011006 G A SCN3A Nonsense_Mutation p.Q446* 0.54 TCGA-BF-A3DM-01 2 166170253 166170253 G A SCN2A Nonsense_Mutation p.W386* 0.43 TCGA-BF-A3DM-01 2 166201121 166201121 C T SCN2A Silent p.I873I 0.54 TCGA-BF-A3DM-01 2 166908336 166908336 G A SCN1A Missense_Mutation p.S286F 0.54 deleterious(0) possibly_damaging(0.567) TCGA-BF-A3DM-01 2 179452311 179452311 C T TTN Missense_Mutation p.G21242E 0.38 TCGA-BF-A3DM-01 2 179485607 179485607 C T TTN Missense_Mutation p.E15244K 0.37 TCGA-BF-A3DM-01 2 179571228 179571228 C T TTN Silent p.R9791R 0.36 TCGA-BF-A3DM-01 2 179611649 179611649 C T TTN Intron 0.39 TCGA-BF-A3DM-01 2 179616605 179616605 G A TTN Intron 0.33 TCGA-BF-A3DM-01 2 179664612 179664612 C T TTN Silent p.K203K 0.39 TCGA-BF-A3DM-01 2 182543168 182543168 G A NEUROD1 Silent p.I140I 0.43 TCGA-BF-A3DM-01 2 1926536 1926536 G A MYT1L Silent p.F335F 0.42 TCGA-BF-A3DM-01 2 196801363 196801363 C T DNAH7 Missense_Mutation p.E1078K 0.39 deleterious(0) probably_damaging(0.997) TCGA-BF-A3DM-01 2 197010643 197010643 C T STK17B Missense_Mutation p.D158N 0.28 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DM-01 2 198949115 198949115 G A PLCL1 Missense_Mutation p.E292K 0.37 tolerated(0.06) possibly_damaging(0.652) TCGA-BF-A3DM-01 2 202900456 202900456 C T FZD7 Silent p.F362F 0.41 TCGA-BF-A3DM-01 2 207024605 207024605 C T EEF1B2 5'UTR 0.27 TCGA-BF-A3DM-01 2 213403228 213403228 G C ERBB4 Silent p.V9V 0.41 TCGA-BF-A3DM-01 2 216190051 216190051 T A ATIC Silent p.I126I 0.31 TCGA-BF-A3DM-01 2 238285527 238285527 G A COL6A3 Silent p.I986I 0.43 TCGA-BF-A3DM-01 2 239037360 239037360 G A ESPNL Missense_Mutation p.A410T 0.58 tolerated(0.18) benign(0.002) TCGA-BF-A3DM-01 2 26679400 26679400 G A DRC1 3'UTR 0.38 TCGA-BF-A3DM-01 2 42936056 42936056 G A MTA3 Missense_Mutation p.G449R 0.31 deleterious(0.01) benign(0.069) TCGA-BF-A3DM-01 2 42990231 42990231 G A OXER1 Silent p.L363L 0.34 TCGA-BF-A3DM-01 2 68882591 68882591 G T PROKR1 Missense_Mutation p.K355N 0.44 deleterious(0.01) benign(0.024) TCGA-BF-A3DM-01 2 70933498 70933498 G A ADD2 Missense_Mutation p.P15S 0.35 deleterious(0.03) benign(0.003) TCGA-BF-A3DM-01 2 85826257 85826257 C T TMEM150A Missense_Mutation p.G253E 0.42 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-BF-A3DM-01 2 88998008 88998008 C T RPIA Nonsense_Mutation p.Q98* 0.39 TCGA-BF-A3DM-01 2 89416877 89416877 C T IGKV1-17 Missense_Mutation p.E103K 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-BF-A3DM-01 2 89476122 89476122 C T IGKV2-24 Missense_Mutation p.G17E 0.41 tolerated(0.07) benign(0.166) TCGA-BF-A3DM-01 2 98834465 98834465 G A VWA3B Missense_Mutation p.D665N 0.35 deleterious(0.04) possibly_damaging(0.873) TCGA-BF-A3DM-01 2 98834468 98834468 C T VWA3B Missense_Mutation p.P666S 0.35 tolerated(0.12) benign(0.019) TCGA-BF-A3DM-01 3 10382301 10382301 A T ATP2B2 Missense_Mutation p.F1002Y 0.46 deleterious(0) probably_damaging(0.994) TCGA-BF-A3DM-01 3 10387752 10387752 C T ATP2B2 Missense_Mutation p.G825E 0.46 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 3 10430008 10430008 G A ATP2B2 Missense_Mutation p.T287I 0.43 deleterious(0) possibly_damaging(0.745) TCGA-BF-A3DM-01 3 108688571 108688571 T A MORC1 Splice_Site p.X851_splice 0.50 TCGA-BF-A3DM-01 3 111603475 111603475 C T PHLDB2 Missense_Mutation p.S184F 0.41 deleterious(0) possibly_damaging(0.498) TCGA-BF-A3DM-01 3 113672889 113672889 C T ZDHHC23 Silent p.P168P 0.49 TCGA-BF-A3DM-01 3 113673215 113673215 T A ZDHHC23 Missense_Mutation p.I277K 0.55 deleterious(0) possibly_damaging(0.799) TCGA-BF-A3DM-01 3 122591385 122591385 C T DIRC2 Missense_Mutation p.T421I 0.52 tolerated(0.06) possibly_damaging(0.885) TCGA-BF-A3DM-01 3 12545048 12545048 G A TSEN2 Missense_Mutation p.C199Y 0.39 tolerated(1) benign(0) TCGA-BF-A3DM-01 3 126062715 126062715 G A KLF15 Missense_Mutation p.S369L 0.71 deleterious(0.02) possibly_damaging(0.456) TCGA-BF-A3DM-01 3 126222860 126222860 C T UROC1 Missense_Mutation p.D294N 0.43 tolerated(0.08) probably_damaging(0.994) TCGA-BF-A3DM-01 3 129130158 129130158 G A EFCAB12 Missense_Mutation p.P293L 0.38 tolerated(0.23) benign(0.002) TCGA-BF-A3DM-01 3 129130159 129130159 G A EFCAB12 Missense_Mutation p.P293S 0.38 tolerated(0.57) benign(0.011) TCGA-BF-A3DM-01 3 131081049 131081049 C T NUDT16P1 RNA 0.69 TCGA-BF-A3DM-01 3 133653521 133653521 C T SLCO2A1 3'UTR 0.41 TCGA-BF-A3DM-01 3 134322777 134322777 C T KY Missense_Mutation p.E544K 0.35 tolerated(0.07) benign(0.199) TCGA-BF-A3DM-01 3 140397380 140397380 C T TRIM42 Silent p.F103F 0.50 TCGA-BF-A3DM-01 3 142215958 142215958 C T ATR Missense_Mutation p.D1879N 0.36 tolerated(0.36) benign(0.333) TCGA-BF-A3DM-01 3 149468623 149468623 A G COMMD2 Missense_Mutation p.F82L 0.56 deleterious(0.05) probably_damaging(0.914) TCGA-BF-A3DM-01 3 150421551 150421551 C T FAM194A Silent p.E45E 0.56 TCGA-BF-A3DM-01 3 160786656 160786656 G A PPM1L Missense_Mutation p.R265Q 0.49 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 3 164735374 164735374 C T SI Missense_Mutation p.E1241K 0.60 tolerated(0.23) benign(0.232) TCGA-BF-A3DM-01 3 164906390 164906390 G A SLITRK3 Silent p.I743I 0.36 TCGA-BF-A3DM-01 3 16630164 16630164 G C DAZL 3'UTR 0.42 TCGA-BF-A3DM-01 3 167183010 167183010 C T SERPINI2 Missense_Mutation p.E284K 0.47 deleterious(0) benign(0.369) TCGA-BF-A3DM-01 3 169099087 169099087 G A MECOM Missense_Mutation p.P112L 0.36 deleterious(0.02) benign(0.381) TCGA-BF-A3DM-01 3 169644647 169644647 G A SAMD7 Silent p.E199E 0.40 TCGA-BF-A3DM-01 3 170723214 170723214 C T SLC2A2 Missense_Mutation p.E275K 0.25 deleterious(0) probably_damaging(0.977) TCGA-BF-A3DM-01 3 179537668 179537668 T C PEX5L Missense_Mutation p.T307A 0.45 tolerated(0.4) benign(0.008) TCGA-BF-A3DM-01 3 3111890 3111890 G A IL5RA 3'UTR 0.41 TCGA-BF-A3DM-01 3 36893258 36893258 G A TRANK1 Silent p.G1569G 0.50 TCGA-BF-A3DM-01 3 38768322 38768322 G A SCN10A Silent p.S954S 0.46 TCGA-BF-A3DM-01 3 38768323 38768323 G A SCN10A Missense_Mutation p.S954F 0.45 deleterious(0.03) possibly_damaging(0.811) TCGA-BF-A3DM-01 3 38889194 38889194 G A SCN11A Missense_Mutation p.P1456L 0.47 tolerated(0.63) possibly_damaging(0.479) TCGA-BF-A3DM-01 3 42264711 42264711 C T TRAK1 Missense_Mutation p.P782S 0.32 tolerated(0.06) probably_damaging(1) TCGA-BF-A3DM-01 3 45988228 45988228 C T CXCR6 Silent p.P85P 0.48 TCGA-BF-A3DM-01 3 47891084 47891084 C T DHX30 Intron 0.48 TCGA-BF-A3DM-01 3 49308537 49308537 C T C3orf62 3'UTR 0.53 TCGA-BF-A3DM-01 3 52867661 52867661 G A TMEM110-MUSTN1 Silent p.S328S 0.58 TCGA-BF-A3DM-01 3 57143616 57143616 G A IL17RD Missense_Mutation p.P167S 0.43 deleterious(0) probably_damaging(0.937) TCGA-BF-A3DM-01 3 69168212 69168212 C T LMOD3 Missense_Mutation p.E432K 0.42 deleterious(0.05) benign(0.21) TCGA-BF-A3DM-01 3 74418350 74418350 G A CNTN3 Silent p.L312L 0.22 TCGA-BF-A3DM-01 3 97806585 97806585 C T OR5AC2 Missense_Mutation p.S190L 0.37 deleterious(0) probably_damaging(0.982) TCGA-BF-A3DM-01 3 98002110 98002110 C T OR5H2 Missense_Mutation p.R127C 0.36 deleterious(0) probably_damaging(0.995) TCGA-BF-A3DM-01 3 98002435 98002435 C T OR5H2 Missense_Mutation p.S235F 0.38 deleterious(0.02) probably_damaging(0.986) TCGA-BF-A3DM-01 3 98250908 98250908 G A GPR15 Missense_Mutation p.D11N 0.42 tolerated(0.1) possibly_damaging(0.798) TCGA-BF-A3DM-01 4 100349074 100349074 G A ADH7 Silent p.F160F 0.44 TCGA-BF-A3DM-01 4 104079535 104079535 C T CENPE Silent p.S985S 0.26 TCGA-BF-A3DM-01 4 110670660 110670660 G T CFI Missense_Mutation p.Q347K 0.45 tolerated(0.93) benign(0.002) TCGA-BF-A3DM-01 4 122780197 122780197 G A BBS7 Missense_Mutation p.R160C 0.46 tolerated(0.12) benign(0) TCGA-BF-A3DM-01 4 134073364 134073364 G A PCDH10 Missense_Mutation p.G690E 0.40 tolerated(1) probably_damaging(0.986) TCGA-BF-A3DM-01 4 13603637 13603637 G A BOD1L1 Silent p.D1629D 0.49 TCGA-BF-A3DM-01 4 140432985 140432985 G A SETD7 Silent p.P311P 0.49 TCGA-BF-A3DM-01 4 164272161 164272161 G A NPY5R Missense_Mutation p.E246K 0.43 tolerated(0.11) benign(0.005) TCGA-BF-A3DM-01 4 164394112 164394112 C T TKTL2 Missense_Mutation p.E259K 0.43 deleterious(0.02) benign(0.224) TCGA-BF-A3DM-01 4 183664346 183664346 G T TENM3 Nonsense_Mutation p.E1135* 0.26 TCGA-BF-A3DM-01 4 25665876 25665876 G A SLC34A2 Silent p.L101L 0.41 TCGA-BF-A3DM-01 4 38775831 38775831 C T TLR10 Missense_Mutation p.E461K 0.46 tolerated(0.33) benign(0.027) TCGA-BF-A3DM-01 4 42454056 42454056 T C ATP8A1 Silent p.L946L 0.43 TCGA-BF-A3DM-01 4 44177182 44177182 C T KCTD8 Silent p.G349G 0.35 TCGA-BF-A3DM-01 4 5578067 5578067 G A EVC2 Silent p.L1058L 0.42 TCGA-BF-A3DM-01 4 70823387 70823387 G A CSN2 Missense_Mutation p.P94S 0.45 deleterious(0.02) possibly_damaging(0.857) TCGA-BF-A3DM-01 4 71114793 71114793 C T CSN3 Missense_Mutation p.P56S 0.39 tolerated(0.75) possibly_damaging(0.876) TCGA-BF-A3DM-01 4 79460483 79460483 C T FRAS1 Silent p.F3778F 0.38 TCGA-BF-A3DM-01 4 80246951 80246951 C T NAA11 Silent p.Q27Q 0.39 TCGA-BF-A3DM-01 4 82074822 82074822 G A PRKG2 Silent p.T322T 0.44 TCGA-BF-A3DM-01 4 8584355 8584355 C T GPR78 Missense_Mutation p.P256S 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-BF-A3DM-01 4 88035745 88035745 C T AFF1 Missense_Mutation p.P587L 0.56 tolerated(0.14) unknown(0) TCGA-BF-A3DM-01 4 98761987 98761987 T C STPG2 Missense_Mutation p.R381G 0.47 tolerated(0.12) benign(0.124) TCGA-BF-A3DM-01 4 99808247 99808247 G A EIF4E Missense_Mutation p.R128C 0.40 tolerated(0.05) benign(0.03) TCGA-BF-A3DM-01 5 110712584 110712584 C T CAMK4 Silent p.T110T 0.26 TCGA-BF-A3DM-01 5 112920141 112920141 C T YTHDC2 Missense_Mutation p.P1264S 0.42 tolerated(0.13) benign(0.025) TCGA-BF-A3DM-01 5 1201859 1201859 C T SLC6A19 Missense_Mutation p.R32W 0.37 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 5 131014771 131014771 G A FNIP1 Missense_Mutation p.R434C 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A3DM-01 5 134724752 134724752 G A H2AFY Missense_Mutation p.T11I 0.29 deleterious(0.05) unknown(0) TCGA-BF-A3DM-01 5 13842003 13842003 C T DNAH5 Missense_Mutation p.R1761Q 0.38 possibly_damaging(0.553) TCGA-BF-A3DM-01 5 13864539 13864539 C T DNAH5 Silent p.E1521E 0.42 TCGA-BF-A3DM-01 5 13870886 13870886 C T DNAH5 Missense_Mutation p.G1275E 0.53 probably_damaging(0.931) TCGA-BF-A3DM-01 5 139876707 139876707 G A ANKHD1 Missense_Mutation p.E950K 0.43 unknown(0) TCGA-BF-A3DM-01 5 140236088 140236088 C T PCDHA10 Missense_Mutation p.P152L 0.43 deleterious_low_confidence(0.02) benign(0.049) TCGA-BF-A3DM-01 5 140256635 140256635 G A PCDHA12 Silent p.E526E 0.41 TCGA-BF-A3DM-01 5 140572553 140572553 C T PCDHB10 Missense_Mutation p.S143L 0.44 tolerated_low_confidence(0.82) benign(0.002) TCGA-BF-A3DM-01 5 150275189 150275189 C T ZNF300 Missense_Mutation p.G554R 0.43 tolerated(0.54) probably_damaging(0.997) TCGA-BF-A3DM-01 5 154092519 154092519 C T LARP1 Missense_Mutation p.P12S 0.34 possibly_damaging(0.803) TCGA-BF-A3DM-01 5 156479517 156479517 C T HAVCR1 Silent p.T176T 0.50 TCGA-BF-A3DM-01 5 160113225 160113225 C T ATP10B Missense_Mutation p.E111K 0.37 deleterious(0.03) benign(0.211) TCGA-BF-A3DM-01 5 167850845 167850845 C T WWC1 Missense_Mutation p.P528S 0.48 tolerated(0.09) probably_damaging(0.982) TCGA-BF-A3DM-01 5 169509824 169509824 G A DOCK2 Missense_Mutation p.G1819S 0.33 tolerated_low_confidence(0.2) benign(0.001) TCGA-BF-A3DM-01 5 176083925 176083925 C T TSPAN17 Silent p.L262L 0.41 TCGA-BF-A3DM-01 5 178392632 178392632 G A ZNF454 Silent p.E409E 0.38 TCGA-BF-A3DM-01 5 180047230 180047230 C T FLT4 Missense_Mutation p.E829K 0.45 deleterious(0) possibly_damaging(0.625) TCGA-BF-A3DM-01 5 180048036 180048036 C T FLT4 Intron 0.48 TCGA-BF-A3DM-01 5 21461940 21461940 G A GUSBP1 RNA 0.43 TCGA-BF-A3DM-01 5 225635 225635 C T SDHA Silent p.A138A 0.35 TCGA-BF-A3DM-01 5 226103 226103 C T SDHA Missense_Mutation p.R188W 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A3DM-01 5 2749124 2749124 G A IRX2 Missense_Mutation p.S233L 0.41 tolerated(0.07) benign(0.284) TCGA-BF-A3DM-01 5 32089580 32089580 C T PDZD2 Missense_Mutation p.P2009L 0.38 deleterious_low_confidence(0.03) benign(0.015) TCGA-BF-A3DM-01 5 36680671 36680671 C T SLC1A3 Silent p.F423F 0.48 TCGA-BF-A3DM-01 5 38881793 38881793 G A OSMR Silent p.K115K 0.41 TCGA-BF-A3DM-01 5 41000328 41000328 C T MROH2B Silent p.V1492V 0.52 TCGA-BF-A3DM-01 5 41000874 41000874 C T MROH2B Missense_Mutation p.G1419E 0.73 tolerated(0.57) possibly_damaging(0.901) TCGA-BF-A3DM-01 5 41154034 41154034 C T C6 Missense_Mutation p.R723K 0.44 tolerated(1) benign(0.001) TCGA-BF-A3DM-01 5 45262123 45262123 G A HCN1 Missense_Mutation p.P858L 0.50 deleterious_low_confidence(0.01) benign(0.021) TCGA-BF-A3DM-01 5 5190165 5190165 G A ADAMTS16 Missense_Mutation p.G377R 0.44 deleterious(0) probably_damaging(0.994) TCGA-BF-A3DM-01 5 5190167 5190167 G A ADAMTS16 Silent p.G377G 0.44 TCGA-BF-A3DM-01 5 52374640 52374640 G A ITGA2 Missense_Mutation p.G955E 0.31 tolerated(1) benign(0.002) TCGA-BF-A3DM-01 5 89949315 89949315 C T GPR98 Silent p.F1308F 0.36 TCGA-BF-A3DM-01 5 93077030 93077030 C T POU5F2 Silent p.R80R 0.61 TCGA-BF-A3DM-01 5 9629923 9629923 T A TAS2R1 Missense_Mutation p.E74D 0.46 tolerated(0.14) benign(0.009) TCGA-BF-A3DM-01 6 110422958 110422958 G A WASF1 Missense_Mutation p.P452L 0.37 tolerated(0.08) benign(0.188) TCGA-BF-A3DM-01 6 123116922 123116922 C T SMPDL3A Silent p.S71S 0.32 TCGA-BF-A3DM-01 6 128304509 128304509 G A PTPRK Nonsense_Mutation p.R1095* 0.47 TCGA-BF-A3DM-01 6 129419523 129419523 C T LAMA2 Missense_Mutation p.S201L 0.51 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 6 132207842 132207842 C T ENPP1 Missense_Mutation p.T862I 0.48 deleterious(0.04) benign(0.038) TCGA-BF-A3DM-01 6 136677896 136677896 C T MAP7 Missense_Mutation p.G672E 0.49 tolerated(0.25) unknown(0) TCGA-BF-A3DM-01 6 136904796 136904796 C T MAP3K5 Missense_Mutation p.R1103Q 0.52 tolerated(0.19) probably_damaging(0.995) TCGA-BF-A3DM-01 6 139487440 139487440 C T HECA Silent p.P97P 0.48 TCGA-BF-A3DM-01 6 152770686 152770686 C T SYNE1 Silent p.E1162E 0.46 TCGA-BF-A3DM-01 6 26247170 26247170 C T HIST1H4G Silent p.G12G 0.40 TCGA-BF-A3DM-01 6 29141438 29141438 C T OR2J2 Missense_Mutation p.S9L 0.35 tolerated(0.2) benign(0.011) TCGA-BF-A3DM-01 6 29141776 29141776 G A OR2J2 Missense_Mutation p.D122N 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 6 29323851 29323851 C T OR5V1 Missense_Mutation p.G41E 0.46 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 6 29976416 29976416 T A ZNRD1-AS1 RNA 0.55 TCGA-BF-A3DM-01 6 31560469 31560469 G A NCR3 Silent p.I10I 0.38 TCGA-BF-A3DM-01 6 32029944 32029944 G A TNXB Silent p.I2386I 0.40 TCGA-BF-A3DM-01 6 32181549 32181549 G A NOTCH4 Missense_Mutation p.P746S 0.50 tolerated(0.05) benign(0.341) TCGA-BF-A3DM-01 6 33156227 33156227 C T COL11A2 Missense_Mutation p.R173Q 0.36 probably_damaging(0.982) TCGA-BF-A3DM-01 6 39874151 39874151 C T MOCS1 3'UTR 0.45 TCGA-BF-A3DM-01 6 39895144 39895144 G A MOCS1 Silent p.S58S 0.25 TCGA-BF-A3DM-01 6 40359748 40359748 C T LRFN2 Silent p.E768E 0.40 TCGA-BF-A3DM-01 6 43014252 43014252 G A CUL7 Nonsense_Mutation p.Q913* 0.45 TCGA-BF-A3DM-01 6 46129247 46129247 G A ENPP5 Missense_Mutation p.P417L 0.59 tolerated(0.67) benign(0) TCGA-BF-A3DM-01 6 46802353 46802353 G A MEP1A Missense_Mutation p.V550M 0.43 deleterious(0.04) benign(0.213) TCGA-BF-A3DM-01 6 49419406 49419406 G A MUT Missense_Mutation p.R369C 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A3DM-01 6 49419407 49419407 G A MUT Silent p.V368V 0.34 TCGA-BF-A3DM-01 6 49754528 49754528 G A PGK2 Missense_Mutation p.H125Y 0.47 tolerated(0.14) benign(0.282) TCGA-BF-A3DM-01 6 73834320 73834320 C T KCNQ5 Intron 0.45 TCGA-BF-A3DM-01 6 99365508 99365508 G A FBXL4 Silent p.F200F 0.27 TCGA-BF-A3DM-01 7 100675152 100675152 C T MUC17 Missense_Mutation p.P152L 0.44 benign(0.009) TCGA-BF-A3DM-01 7 100687008 100687008 C T MUC17 Missense_Mutation p.S4104F 0.42 unknown(0) TCGA-BF-A3DM-01 7 102614005 102614005 T C FBXL13 Intron 0.35 TCGA-BF-A3DM-01 7 107329538 107329538 G A SLC26A4 Missense_Mutation p.E348K 0.37 tolerated(0.42) benign(0.008) TCGA-BF-A3DM-01 7 113518701 113518701 C T PPP1R3A Missense_Mutation p.E816K 0.40 deleterious(0.04) benign(0.32) TCGA-BF-A3DM-01 7 116859158 116859158 C T ST7 Missense_Mutation p.P476S 0.40 deleterious(0.02) benign(0.078) TCGA-BF-A3DM-01 7 131910920 131910920 G A PLXNA4 Missense_Mutation p.S661L 0.42 tolerated(0.19) benign(0.024) TCGA-BF-A3DM-01 7 136700305 136700305 T A CHRM2 Silent p.V231V 0.58 TCGA-BF-A3DM-01 7 138270641 138270641 C T TRIM24 3'UTR 0.36 TCGA-BF-A3DM-01 7 138601678 138601678 G A KIAA1549 Silent p.S898S 0.41 TCGA-BF-A3DM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-BF-A3DM-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.40 deleterious(0) possibly_damaging(0.838) TCGA-BF-A3DM-01 7 142045744 142045744 C T TRBV4-2 Missense_Mutation p.S91F 0.41 deleterious(0) probably_damaging(0.986) TCGA-BF-A3DM-01 7 142379036 142379036 C T MTRNR2L6 3'Flank 0.34 TCGA-BF-A3DM-01 7 142649599 142649599 G A KEL Silent p.P400P 0.50 TCGA-BF-A3DM-01 7 148456715 148456715 G A CUL1 Missense_Mutation p.V204I 0.50 tolerated(0.26) benign(0.434) TCGA-BF-A3DM-01 7 148800729 148800729 G A ZNF425 Missense_Mutation p.A745V 0.42 tolerated(0.17) possibly_damaging(0.495) TCGA-BF-A3DM-01 7 149174108 149174108 G A ZNF746 Missense_Mutation p.P248L 0.39 tolerated(0.11) benign(0.049) TCGA-BF-A3DM-01 7 150217989 150217989 G A GIMAP7 3'UTR 0.40 TCGA-BF-A3DM-01 7 150883675 150883675 C T ASB10 Missense_Mutation p.E130K 0.25 tolerated(0.07) benign(0.219) TCGA-BF-A3DM-01 7 1516529 1516529 G A INTS1 Missense_Mutation p.S1655L 0.39 deleterious(0.01) benign(0.231) TCGA-BF-A3DM-01 7 156447349 156447349 C T RNF32 Silent p.L118L 0.41 TCGA-BF-A3DM-01 7 156451211 156451211 A C RNF32 Missense_Mutation p.K211Q 0.42 tolerated(0.13) benign(0.005) TCGA-BF-A3DM-01 7 157691406 157691406 C T PTPRN2 Missense_Mutation p.E583K 0.42 tolerated(1) benign(0.012) TCGA-BF-A3DM-01 7 16298607 16298607 G A ISPD Missense_Mutation p.H322Y 0.33 tolerated(0.08) benign(0.212) TCGA-BF-A3DM-01 7 2962946 2962946 G A CARD11 Silent p.T654T 0.45 TCGA-BF-A3DM-01 7 31126557 31126557 G A ADCYAP1R1 Missense_Mutation p.G275E 0.38 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 7 37252982 37252982 G T ELMO1 Silent p.L304L 0.53 TCGA-BF-A3DM-01 7 38389432 38389432 C T TRGV5 5'UTR 0.31 TCGA-BF-A3DM-01 7 42005498 42005498 C T GLI3 Missense_Mutation p.R1058Q 0.47 deleterious(0.01) possibly_damaging(0.595) TCGA-BF-A3DM-01 7 45753484 45753484 G A ADCY1 Missense_Mutation p.G1084S 0.41 tolerated_low_confidence(0.71) benign(0) TCGA-BF-A3DM-01 7 54617709 54617709 C T VSTM2A Silent p.F160F 0.33 TCGA-BF-A3DM-01 7 76140168 76140168 G A UPK3B Missense_Mutation p.G67R 0.43 tolerated_low_confidence(0.22) benign(0.361) TCGA-BF-A3DM-01 7 86468428 86468428 C T GRM3 Missense_Mutation p.P533L 0.44 tolerated(0.61) possibly_damaging(0.752) TCGA-BF-A3DM-01 7 87092077 87092077 G A ABCB4 Missense_Mutation p.P95S 0.39 tolerated(0.62) benign(0.01) TCGA-BF-A3DM-01 7 899919 899919 G A SUN1 Missense_Mutation p.R560Q 0.41 tolerated(0.17) benign(0.002) TCGA-BF-A3DM-01 7 98547765 98547765 C T TRRAP Silent p.F1731F 0.40 TCGA-BF-A3DM-01 7 99971334 99971334 C T PILRA Silent p.L19L 0.44 TCGA-BF-A3DM-01 8 100865828 100865828 C T VPS13B Missense_Mutation p.P3429L 0.49 tolerated(0.66) benign(0) TCGA-BF-A3DM-01 8 101065073 101065073 G A RGS22 Missense_Mutation p.P549L 0.41 deleterious(0.01) possibly_damaging(0.7) TCGA-BF-A3DM-01 8 101076098 101076098 C T RGS22 Missense_Mutation p.D300N 0.38 tolerated(0.15) benign(0.005) TCGA-BF-A3DM-01 8 10468714 10468714 G A RP1L1 Missense_Mutation p.P965L 0.40 benign(0.005) TCGA-BF-A3DM-01 8 135612789 135612789 C T ZFAT Missense_Mutation p.V789I 0.36 tolerated(0.13) possibly_damaging(0.848) TCGA-BF-A3DM-01 8 139839023 139839023 C T COL22A1 Missense_Mutation p.D283N 0.40 unknown(0) TCGA-BF-A3DM-01 8 143562694 143562694 C T BAI1 Silent p.S636S 0.43 TCGA-BF-A3DM-01 8 143960476 143960476 G A CYP11B1 Missense_Mutation p.R123C 0.34 deleterious(0.01) benign(0.168) TCGA-BF-A3DM-01 8 143996515 143996515 C T CYP11B2 Missense_Mutation p.R181Q 0.17 tolerated(0.14) benign(0.058) TCGA-BF-A3DM-01 8 144239648 144239648 C T LY6H 3'UTR 0.50 TCGA-BF-A3DM-01 8 144239649 144239649 C T LY6H 3'UTR 0.50 TCGA-BF-A3DM-01 8 145999766 145999766 G A ZNF34 Missense_Mutation p.P190S 0.24 tolerated(0.8) benign(0.001) TCGA-BF-A3DM-01 8 1814708 1814708 C T ARHGEF10 Nonsense_Mutation p.R188* 0.32 TCGA-BF-A3DM-01 8 22449084 22449084 C T PDLIM2 Missense_Mutation p.P512S 0.61 tolerated(0.06) possibly_damaging(0.692) TCGA-BF-A3DM-01 8 24167683 24167683 C T ADAM28 Missense_Mutation p.L79F 0.53 tolerated(0.08) probably_damaging(0.971) TCGA-BF-A3DM-01 8 24358371 24358371 C T ADAM7 Missense_Mutation p.R691C 0.46 deleterious(0.02) benign(0.051) TCGA-BF-A3DM-01 8 25745418 25745418 G A EBF2 Silent p.I274I 0.41 TCGA-BF-A3DM-01 8 2796226 2796226 C T CSMD1 Missense_Mutation p.E3526K 0.38 probably_damaging(0.996) TCGA-BF-A3DM-01 8 37729818 37729818 A T RAB11FIP1 Nonsense_Mutation p.C834* 0.54 TCGA-BF-A3DM-01 8 39845390 39845390 G A IDO2 Silent p.G163G 0.35 TCGA-BF-A3DM-01 8 55537388 55537388 G A RP1 Missense_Mutation p.E316K 0.48 deleterious(0.02) probably_damaging(0.919) TCGA-BF-A3DM-01 8 65527679 65527679 C T CYP7B1 Missense_Mutation p.E321K 0.36 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 8 8234635 8234635 C T SGK223 Silent p.Q428Q 0.37 TCGA-BF-A3DM-01 8 88886136 88886136 C T DCAF4L2 Missense_Mutation p.G22R 0.36 deleterious(0.01) benign(0.228) TCGA-BF-A3DM-01 9 118950229 118950229 C T PAPPA Silent p.S404S 0.70 TCGA-BF-A3DM-01 9 119115183 119115183 G A PAPPA Missense_Mutation p.R1388Q 0.71 tolerated(0.38) possibly_damaging(0.553) TCGA-BF-A3DM-01 9 127933372 127933372 G A PPP6C Missense_Mutation p.H92Y 0.83 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 9 129642870 129642870 C T ZBTB34 Missense_Mutation p.H394Y 0.77 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 9 21239926 21239926 C T IFNA14 Silent p.L3L 0.75 TCGA-BF-A3DM-01 9 34397532 34397532 G A C9orf24 Silent p.L34L 0.92 TCGA-BF-A3DM-01 9 35853233 35853233 G A TMEM8B Silent p.L354L 0.82 TCGA-BF-A3DM-01 9 79320019 79320019 G A PRUNE2 Missense_Mutation p.P2391S 0.80 deleterious(0.04) probably_damaging(1) TCGA-BF-A3DM-01 9 98242860 98242860 G A PTCH1 Missense_Mutation p.P253S 0.93 tolerated(0.73) benign(0.011) TCGA-BF-A3DM-01 9 990557 990557 C T DMRT3 Missense_Mutation p.S324L 0.73 deleterious_low_confidence(0) benign(0.057) TCGA-BF-A3DM-01 X 100617189 100617189 G A BTK Missense_Mutation p.P187L 0.89 deleterious(0.03) probably_damaging(0.929) TCGA-BF-A3DM-01 X 111095589 111095589 C T TRPC5 Missense_Mutation p.M438I 0.89 tolerated(0.59) probably_damaging(0.93) TCGA-BF-A3DM-01 X 118544178 118544178 C T SLC25A43 Silent p.S181S 0.93 TCGA-BF-A3DM-01 X 128926698 128926698 G A SASH3 Silent p.V229V 0.96 TCGA-BF-A3DM-01 X 129270128 129270128 G A AIFM1 Silent p.G399G 0.94 TCGA-BF-A3DM-01 X 12938064 12938064 T A TLR8 Missense_Mutation p.I302N 0.93 deleterious(0) probably_damaging(0.976) TCGA-BF-A3DM-01 X 130407757 130407758 - AGG IGSF1 3'UTR 0.69 TCGA-BF-A3DM-01 X 132162210 132162210 C T USP26 Silent p.G13G 0.91 TCGA-BF-A3DM-01 X 150869428 150869428 G A PRRG3 Missense_Mutation p.E207K 0.89 tolerated(0.08) benign(0.235) TCGA-BF-A3DM-01 X 150909279 150909279 C T CNGA2 Silent p.L130L 0.88 TCGA-BF-A3DM-01 X 151899942 151899942 G A MAGEA12 Silent p.L287L 0.88 TCGA-BF-A3DM-01 X 15800757 15800757 C T CA5B Silent p.P308P 0.84 TCGA-BF-A3DM-01 X 1585177 1585177 C T P2RY8 Missense_Mutation p.G92E 0.42 deleterious(0) probably_damaging(0.998) TCGA-BF-A3DM-01 X 26212941 26212941 G A MAGEB6 Silent p.G326G 0.78 TCGA-BF-A3DM-01 X 32613978 32613978 G A DMD Silent p.L500L 0.85 TCGA-BF-A3DM-01 X 34148866 34148866 C T FAM47A Silent p.K510K 0.21 TCGA-BF-A3DM-01 X 34148905 34148905 C T FAM47A Silent p.K497K 0.87 TCGA-BF-A3DM-01 X 51079181 51079181 C T NUDT10 3'UTR 1.00 TCGA-BF-A3DM-01 X 55116508 55116508 G A PAGE2 Missense_Mutation p.E19K 0.93 tolerated(0.24) possibly_damaging(0.596) TCGA-BF-A3DM-01 X 57358218 57358218 G A FAAH2 Silent p.Q200Q 0.88 TCGA-BF-A3DM-01 X 65476102 65476102 C T HEPH Silent p.T996T 0.93 TCGA-BF-A3DM-01 X 71360061 71360061 C T NHSL2 Missense_Mutation p.P888L 0.81 deleterious(0) benign(0.198) TCGA-BF-A3DM-01 X 73962509 73962509 C T KIAA2022 Missense_Mutation p.R628Q 1.00 deleterious(0) probably_damaging(1) TCGA-BF-A3DM-01 X 75003415 75003415 C T MAGEE2 Missense_Mutation p.R491Q 0.93 tolerated(0.05) benign(0.001) TCGA-BF-A3DM-01 X 84634231 84634231 G A POF1B Missense_Mutation p.P77S 0.81 tolerated_low_confidence(0.08) possibly_damaging(0.731) TCGA-BF-A3DM-01 Y 3447341 3447341 G A TGIF2LY Missense_Mutation p.S19N 0.78 tolerated(0.09) benign(0.204) TCGA-BF-A3DN-01 10 33502319 33502319 C T NRP1 Missense_Mutation p.A537T 0.64 tolerated(0.05) benign(0.004) TCGA-BF-A3DN-01 10 82272022 82272022 T A TSPAN14 Silent p.P191P 0.74 TCGA-BF-A3DN-01 10 90732959 90732959 G A ACTA2 Intron 0.64 TCGA-BF-A3DN-01 10 93851 93851 C T TUBB8 Missense_Mutation p.D161N 0.30 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-BF-A3DN-01 10 95995871 95995871 G A PLCE1 Missense_Mutation p.R805Q 0.67 tolerated(0.05) benign(0.022) TCGA-BF-A3DN-01 11 102745631 102745631 C T MMP12 RNA 0.33 TCGA-BF-A3DN-01 11 2592606 2592606 G A KCNQ1 Missense_Mutation p.G219E 0.31 deleterious(0) probably_damaging(1) TCGA-BF-A3DN-01 11 6291015 6291015 A T CCKBR Missense_Mutation p.N90Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-BF-A3DN-01 11 62911066 62911066 A G SLC22A24 Silent p.N62N 0.28 TCGA-BF-A3DN-01 11 64338456 64338456 C T SLC22A11 Missense_Mutation p.S532L 0.33 tolerated(0.77) benign(0.146) TCGA-BF-A3DN-01 11 65403166 65403166 C T PCNXL3 Missense_Mutation p.S1784L 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A3DN-01 12 117461999 117461999 C T FBXW8 Missense_Mutation p.S472F 0.78 tolerated(0.34) benign(0.14) TCGA-BF-A3DN-01 12 3147221 3147221 A G TEAD4 Missense_Mutation p.T329A 0.35 tolerated(0.05) benign(0.375) TCGA-BF-A3DN-01 12 5021217 5021217 G A KCNA1 Missense_Mutation p.E225K 0.73 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DN-01 12 81503432 81503432 T C ACSS3 Silent p.S135S 0.73 TCGA-BF-A3DN-01 13 33306319 33306319 G A PDS5B Silent p.A735A 0.30 TCGA-BF-A3DN-01 14 102476715 102476715 C T DYNC1H1 Silent p.I2108I 0.45 TCGA-BF-A3DN-01 14 74972782 74972782 C T LTBP2 Silent p.Q1382Q 0.50 TCGA-BF-A3DN-01 14 89093244 89093244 C T EML5 Missense_Mutation p.G1560R 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-A3DN-01 15 23692317 23692317 T C GOLGA6L2 Silent p.Q4Q 0.23 TCGA-BF-A3DN-01 15 27128562 27128562 C T GABRA5 Missense_Mutation p.P119S 0.51 tolerated(0.77) possibly_damaging(0.874) TCGA-BF-A3DN-01 15 42373218 42373218 G A PLA2G4D Silent p.F357F 0.49 TCGA-BF-A3DN-01 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.28 tolerated(0.08) probably_damaging(0.913) TCGA-BF-A3DN-01 16 23079285 23079285 A T USP31 3'UTR 0.33 TCGA-BF-A3DN-01 16 3080465 3080465 C T CCDC64B Silent p.R249R 0.56 TCGA-BF-A3DN-01 16 5135555 5135555 T C FAM86A 3'UTR 0.61 TCGA-BF-A3DN-01 16 57060787 57060787 C T NLRC5 Silent p.F644F 0.49 TCGA-BF-A3DN-01 16 77353946 77353946 C T ADAMTS18 Missense_Mutation p.E778K 0.30 tolerated(0.3) benign(0.041) TCGA-BF-A3DN-01 16 87417077 87417077 G A FBXO31 Nonsense_Mutation p.Q92* 0.40 TCGA-BF-A3DN-01 17 10310124 10310124 C T MYH8 Missense_Mutation p.G685E 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-BF-A3DN-01 17 11840675 11840675 G A DNAH9 Missense_Mutation p.D4166N 0.18 benign(0.081) TCGA-BF-A3DN-01 17 37665992 37665992 C T CDK12 Missense_Mutation p.R882W 0.36 probably_damaging(0.999) TCGA-BF-A3DN-01 18 28971146 28971146 G A DSG4 Missense_Mutation p.D264N 0.53 deleterious(0) probably_damaging(1) TCGA-BF-A3DN-01 18 28991408 28991408 G A DSG4 Silent p.S803S 0.58 TCGA-BF-A3DN-01 18 29054229 29054229 C T DSG3 Silent p.F749F 0.42 TCGA-BF-A3DN-01 18 60242215 60242215 C T ZCCHC2 Silent p.G967G 0.30 TCGA-BF-A3DN-01 19 35449284 35449284 C T ZNF792 Missense_Mutation p.S492N 0.65 tolerated(0.88) probably_damaging(0.997) TCGA-BF-A3DN-01 19 37117823 37117823 C - ZNF382 Frame_Shift_Del p.H342Mfs*6 0.39 TCGA-BF-A3DN-01 19 42839252 42839252 G A MEGF8 Silent p.E208E 0.45 TCGA-BF-A3DN-01 19 43690614 43690614 C T PSG5 5'UTR 0.20 TCGA-BF-A3DN-01 19 44470724 44470724 C T ZNF221 Missense_Mutation p.S357F 0.56 tolerated(0.27) benign(0.222) TCGA-BF-A3DN-01 19 47124917 47124917 T G PTGIR Missense_Mutation p.T261P 0.61 tolerated(0.07) possibly_damaging(0.664) TCGA-BF-A3DN-01 19 52955108 52955108 G A ZNF578 5'Flank 0.21 TCGA-BF-A3DN-01 19 53959186 53959186 C G ZNF761 RNA 0.35 TCGA-BF-A3DN-01 19 53959187 53959187 C T ZNF761 RNA 0.34 TCGA-BF-A3DN-01 19 55239263 55239263 C T KIR3DL3 Missense_Mutation p.S181F 0.55 tolerated(0.26) benign(0.227) TCGA-BF-A3DN-01 19 55333038 55333038 C T KIR3DL1 Missense_Mutation p.S225F 0.57 deleterious(0.02) benign(0.221) TCGA-BF-A3DN-01 19 9073897 9073897 C T MUC16 Missense_Mutation p.E4517K 0.43 unknown(0) TCGA-BF-A3DN-01 1 118495284 118495284 T C WDR3 Missense_Mutation p.M717T 0.29 tolerated(0.52) benign(0.004) TCGA-BF-A3DN-01 1 152328911 152328911 G A FLG2 Nonsense_Mutation p.Q451* 0.51 TCGA-BF-A3DN-01 1 153270485 153270485 G A PGLYRP3 Missense_Mutation p.P325S 0.18 deleterious(0) probably_damaging(1) TCGA-BF-A3DN-01 1 158819091 158819091 G A MNDA 3'UTR 0.35 TCGA-BF-A3DN-01 1 17046643 17046643 T C ESPNP RNA 0.14 TCGA-BF-A3DN-01 1 237664122 237664122 G A RYR2 Missense_Mutation p.G772E 0.27 probably_damaging(0.99) TCGA-BF-A3DN-01 1 28907523 28907523 A G TRNAU1AP 3'Flank 0.35 TCGA-BF-A3DN-01 1 52250221 52250221 G A OSBPL9 Missense_Mutation p.G609E 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A3DN-01 1 53558324 53558324 G A SLC1A7 Silent p.I311I 0.36 TCGA-BF-A3DN-01 1 53608168 53608168 G A SLC1A7 5'UTR 0.32 TCGA-BF-A3DN-01 1 55167796 55167796 C T MROH7 Silent p.L1107L 0.40 TCGA-BF-A3DN-01 1 67666516 67666516 C T IL23R Silent p.V196V 0.32 TCGA-BF-A3DN-01 1 86916377 86916377 G A CLCA2 Missense_Mutation p.G706R 0.35 tolerated(0.84) benign(0.059) TCGA-BF-A3DN-01 20 31656748 31656748 G A BPIFB3 Missense_Mutation p.G373E 0.28 tolerated(0.36) benign(0.134) TCGA-BF-A3DN-01 20 31656749 31656749 G A BPIFB3 Silent p.G373G 0.27 TCGA-BF-A3DN-01 20 3759160 3759160 C T SPEF1 Missense_Mutation p.A171T 0.69 tolerated(0.46) benign(0.021) TCGA-BF-A3DN-01 20 40877386 40877386 G A PTPRT Silent p.I751I 0.29 TCGA-BF-A3DN-01 20 62572210 62572210 C T UCKL1 Splice_Site p.X373_splice 0.58 TCGA-BF-A3DN-01 22 38041502 38041502 G T SH3BP1 Missense_Mutation p.E303D 0.32 tolerated(0.32) benign(0.029) TCGA-BF-A3DN-01 2 143790836 143790836 C T KYNU Silent p.F329F 0.51 TCGA-BF-A3DN-01 2 175742832 175742832 G A CHN1 Silent p.F95F 0.62 TCGA-BF-A3DN-01 2 179517255 179517255 C T TTN Silent p.P13019P 0.28 TCGA-BF-A3DN-01 2 1926514 1926514 C T MYT1L Missense_Mutation p.E343K 0.14 tolerated_low_confidence(0.18) possibly_damaging(0.885) TCGA-BF-A3DN-01 2 234545533 234545533 C T UGT1A10 Missense_Mutation p.S122L 0.12 tolerated(0.14) benign(0.156) TCGA-BF-A3DN-01 2 89544523 89544523 G A IGKV2-30 Missense_Mutation p.T34I 0.62 tolerated(0.11) benign(0.018) TCGA-BF-A3DN-01 3 148924059 148924059 C T CP Silent p.G368G 0.50 TCGA-BF-A3DN-01 3 15115903 15115903 G A ZFYVE20 Missense_Mutation p.P581S 0.64 tolerated_low_confidence(0.55) benign(0.013) TCGA-BF-A3DN-01 3 154861348 154861348 G A MME Silent p.E435E 0.21 TCGA-BF-A3DN-01 3 186459342 186459342 C T KNG1 Missense_Mutation p.S386L 0.59 deleterious(0) probably_damaging(0.987) TCGA-BF-A3DN-01 3 194379705 194379705 G A LSG1 Missense_Mutation p.P247L 0.22 tolerated(0.17) benign(0) TCGA-BF-A3DN-01 3 48622192 48622192 C T COL7A1 Missense_Mutation p.G1341E 0.21 unknown(0) TCGA-BF-A3DN-01 4 148460990 148460990 G A EDNRA Missense_Mutation p.V308I 0.43 deleterious(0) possibly_damaging(0.606) TCGA-BF-A3DN-01 4 47663875 47663875 T C CORIN Splice_Site p.X530_splice 0.21 TCGA-BF-A3DN-01 4 90856722 90856722 A G MMRN1 Missense_Mutation p.K631E 0.03 deleterious(0) possibly_damaging(0.853) TCGA-BF-A3DN-01 5 121780306 121780306 G A SNCAIP Missense_Mutation p.E491K 0.48 deleterious(0.03) possibly_damaging(0.626) TCGA-BF-A3DN-01 5 140215804 140215804 A G PCDHA7 Silent p.Q612Q 0.21 TCGA-BF-A3DN-01 5 140554138 140554138 G A PCDHB7 Silent p.E574E 0.62 TCGA-BF-A3DN-01 5 167850881 167850881 C T WWC1 Missense_Mutation p.L540F 0.30 deleterious(0.05) probably_damaging(1) TCGA-BF-A3DN-01 5 176764711 176764711 G A LMAN2 Missense_Mutation p.T170I 0.22 tolerated(0.34) benign(0.009) TCGA-BF-A3DN-01 5 24535308 24535308 C T CDH10 Missense_Mutation p.G243S 0.28 tolerated(0.08) possibly_damaging(0.765) TCGA-BF-A3DN-01 5 42711475 42711475 G A GHR Splice_Site p.X262_splice 0.27 TCGA-BF-A3DN-01 5 73168939 73168939 C T ARHGEF28 Silent p.F894F 0.37 TCGA-BF-A3DN-01 5 82817123 82817123 C T VCAN Missense_Mutation p.P1000S 0.25 tolerated(0.23) benign(0.114) TCGA-BF-A3DN-01 6 51512867 51512867 G A PKHD1 Missense_Mutation p.S3787L 0.24 deleterious(0.03) benign(0.03) TCGA-BF-A3DN-01 6 52268794 52268794 C A PAQR8 Missense_Mutation p.F261L 0.16 deleterious(0) possibly_damaging(0.779) TCGA-BF-A3DN-01 6 55216368 55216368 G A GFRAL Missense_Mutation p.D230N 0.25 tolerated(0.5) probably_damaging(0.914) TCGA-BF-A3DN-01 7 121653532 121653532 T A PTPRZ1 Missense_Mutation p.S1478T 0.47 tolerated_low_confidence(0.05) benign(0.282) TCGA-BF-A3DN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-BF-A3DN-01 7 141732710 141732710 G A MGAM Splice_Site p.X557_splice 0.40 TCGA-BF-A3DN-01 7 148892615 148892615 G A ZNF282 5'UTR 0.27 TCGA-BF-A3DN-01 7 93108821 93108821 T C CALCR Splice_Site p.X36_splice 0.46 TCGA-BF-A3DN-01 8 10469525 10469525 C T RP1L1 Missense_Mutation p.A695T 0.68 benign(0.092) TCGA-BF-A3DN-01 8 139163542 139163542 G A FAM135B Missense_Mutation p.S1059F 0.54 deleterious(0) possibly_damaging(0.643) TCGA-BF-A3DN-01 8 144239833 144239833 G A LY6H Missense_Mutation p.S107L 0.04 deleterious(0.02) benign(0.233) TCGA-BF-A3DN-01 8 2017587 2017587 C T MYOM2 Missense_Mutation p.P255L 0.74 tolerated(0.27) benign(0.04) TCGA-BF-A3DN-01 8 21982903 21982903 G C HR Missense_Mutation p.H557Q 0.67 deleterious(0.01) possibly_damaging(0.461) TCGA-BF-A3DN-01 9 130223509 130223509 A C LRSAM1 Missense_Mutation p.T127P 0.16 tolerated(0.33) benign(0.005) TCGA-BF-A3DN-01 9 130513556 130513556 C T SH2D3C Silent p.L193L 0.71 TCGA-BF-A3DN-01 9 36118962 36118962 C T RECK Missense_Mutation p.P821L 0.29 deleterious(0) benign(0.364) TCGA-BF-A3DN-01 X 124030042 124030042 G A TENM1 Missense_Mutation p.T89I 0.61 deleterious_low_confidence(0.04) possibly_damaging(0.723) TCGA-BF-A3DN-01 X 130678233 130678233 C T OR13H1 Silent p.F62F 0.64 TCGA-BF-A3DN-01 X 73963375 73963375 G T KIAA2022 Silent p.P339P 0.64 TCGA-BF-A5EO-01 10 114053581 114053581 C G TECTB Missense_Mutation p.A190G 0.39 deleterious(0.01) benign(0.004) TCGA-BF-A5EO-01 10 115345609 115345609 G C HABP2 Missense_Mutation p.C477S 0.41 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 10 119043986 119043986 G A PDZD8 Missense_Mutation p.S753F 0.41 deleterious(0.03) benign(0.429) TCGA-BF-A5EO-01 10 125801924 125801924 G A CHST15 Missense_Mutation p.P309L 0.35 deleterious(0) probably_damaging(0.958) TCGA-BF-A5EO-01 10 134943039 134943039 C T GPR123 3'UTR 0.57 TCGA-BF-A5EO-01 10 27537547 27537547 C T RP11-85G18.6 Intron 0.41 TCGA-BF-A5EO-01 10 37508003 37508003 G A ANKRD30A Silent p.L1065L 0.38 TCGA-BF-A5EO-01 10 38406470 38406470 G T ZNF37A Nonsense_Mutation p.E131* 0.43 TCGA-BF-A5EO-01 10 44873953 44873953 C T CXCL12 Intron 0.50 TCGA-BF-A5EO-01 10 5037637 5037637 G A AKR1C2 Silent p.V240V 0.13 TCGA-BF-A5EO-01 10 50966613 50966613 G A OGDHL Missense_Mutation p.S9F 0.33 deleterious(0.05) benign(0.001) TCGA-BF-A5EO-01 10 5144716 5144716 C T AKR1C3 Silent p.V240V 0.20 TCGA-BF-A5EO-01 10 52103313 52103313 C T SGMS1 Missense_Mutation p.E188K 0.07 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 10 61834724 61834724 C T ANK3 Missense_Mutation p.G1972E 0.28 benign(0.001) TCGA-BF-A5EO-01 10 63519930 63519930 G T C10orf107 Silent p.T134T 0.26 TCGA-BF-A5EO-01 10 70333069 70333069 C T TET1 Missense_Mutation p.S325F 0.43 deleterious(0) possibly_damaging(0.646) TCGA-BF-A5EO-01 10 75051152 75051152 G A TTC18 Missense_Mutation p.H761Y 0.37 tolerated(0.17) probably_damaging(0.981) TCGA-BF-A5EO-01 10 75435104 75435104 G A AGAP5 Silent p.I438I 0.38 TCGA-BF-A5EO-01 10 81702224 81702224 C T SFTPD Missense_Mutation p.G118E 0.47 deleterious(0) probably_damaging(0.988) TCGA-BF-A5EO-01 10 86185512 86185512 T G CCSER2 Missense_Mutation p.F577L 0.47 tolerated(0.42) benign(0.047) TCGA-BF-A5EO-01 10 98469606 98469606 C T PIK3AP1 Missense_Mutation p.E50K 0.33 tolerated(0.57) benign(0.001) TCGA-BF-A5EO-01 11 103866894 103866894 G A PDGFD Missense_Mutation p.P137S 0.36 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EO-01 11 107300035 107300035 A C CWF19L2 Missense_Mutation p.V308G 0.31 tolerated(0.38) benign(0.001) TCGA-BF-A5EO-01 11 108384743 108384743 C T EXPH5 Silent p.R497R 0.35 TCGA-BF-A5EO-01 11 1094818 1094818 C T MUC2 Missense_Mutation p.S1969F 0.29 unknown(0) TCGA-BF-A5EO-01 11 114442165 114442165 C T NXPE4 Missense_Mutation p.G377E 0.24 deleterious(0.03) probably_damaging(1) TCGA-BF-A5EO-01 11 117152336 117152336 C T RNF214 Silent p.I419I 0.19 TCGA-BF-A5EO-01 11 118184587 118184587 G A CD3E Missense_Mutation p.R173K 0.26 deleterious(0.04) benign(0.259) TCGA-BF-A5EO-01 11 118531981 118531981 C T TREH Missense_Mutation p.E249K 0.29 tolerated(0.49) benign(0.02) TCGA-BF-A5EO-01 11 119029342 119029342 G A ABCG4 Missense_Mutation p.D415N 0.33 tolerated(1) benign(0.001) TCGA-BF-A5EO-01 11 12023923 12023923 G A DKK3 Missense_Mutation p.P92L 0.26 tolerated(0.09) benign(0.282) TCGA-BF-A5EO-01 11 121032932 121032932 G A TECTA Missense_Mutation p.D1709N 0.33 tolerated(0.19) benign(0.029) TCGA-BF-A5EO-01 11 1268307 1268307 C A MUC5B Silent p.A3399A 0.24 TCGA-BF-A5EO-01 11 1270394 1270394 G A MUC5B Missense_Mutation p.R4095K 0.28 unknown(0) TCGA-BF-A5EO-01 11 1270395 1270395 G A MUC5B Silent p.R4095R 0.28 TCGA-BF-A5EO-01 11 130284446 130284446 C T ADAMTS8 Missense_Mutation p.E516K 0.25 tolerated(0.49) benign(0.421) TCGA-BF-A5EO-01 11 134234221 134234221 G A GLB1L2 Splice_Site p.X245_splice 0.30 TCGA-BF-A5EO-01 11 17190243 17190243 G A PIK3C2A Missense_Mutation p.A349V 0.31 tolerated_low_confidence(1) benign(0) TCGA-BF-A5EO-01 11 17434262 17434262 C T ABCC8 Missense_Mutation p.R836Q 0.18 deleterious(0) probably_damaging(0.971) TCGA-BF-A5EO-01 11 18955711 18955711 C T MRGPRX1 Silent p.R207R 0.32 TCGA-BF-A5EO-01 11 22360029 22360029 C T SLC17A6 5'UTR 0.27 TCGA-BF-A5EO-01 11 2356893 2356893 G A CD81-AS1 Intron 0.25 TCGA-BF-A5EO-01 11 33565867 33565867 C T KIAA1549L Missense_Mutation p.P623S 0.30 tolerated_low_confidence(0.07) benign(0.099) TCGA-BF-A5EO-01 11 4929497 4929497 G A OR51A7 Missense_Mutation p.E300K 0.23 tolerated(0.85) benign(0.001) TCGA-BF-A5EO-01 11 5530266 5530266 G A UBQLN3 Missense_Mutation p.P175S 0.28 deleterious(0.03) benign(0.098) TCGA-BF-A5EO-01 11 55418378 55418378 C T OR4S2 5'Flank 0.31 TCGA-BF-A5EO-01 11 55658707 55658707 G A TRIM51 Missense_Mutation p.D320N 0.33 tolerated(0.36) benign(0.001) TCGA-BF-A5EO-01 11 55798825 55798825 T G OR5AS1 Missense_Mutation p.S311A 0.24 tolerated(0.15) benign(0.018) TCGA-BF-A5EO-01 11 55872863 55872863 C T OR8H2 Silent p.L115L 0.29 TCGA-BF-A5EO-01 11 5776772 5776772 G A OR52N4 Missense_Mutation p.E268K 0.34 tolerated(0.53) benign(0.004) TCGA-BF-A5EO-01 11 5776912 5776912 G A OR52N4 Silent p.K314K 0.36 TCGA-BF-A5EO-01 11 59245401 59245401 C T OR4D10 Missense_Mutation p.P167S 0.28 deleterious(0.01) probably_damaging(1) TCGA-BF-A5EO-01 11 59282568 59282568 C T OR4D9 Silent p.F61F 0.26 TCGA-BF-A5EO-01 11 64366061 64366061 G A SLC22A12 Missense_Mutation p.V302M 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 11 64503038 64503038 C T RASGRP2 Silent p.V424V 0.25 TCGA-BF-A5EO-01 11 64676806 64676806 G A ATG2A Missense_Mutation p.P714L 0.26 deleterious(0.03) benign(0.313) TCGA-BF-A5EO-01 11 64676807 64676807 G A ATG2A Missense_Mutation p.P714S 0.26 tolerated(0.16) benign(0.366) TCGA-BF-A5EO-01 11 66568506 66568506 G C C11orf80 Missense_Mutation p.E260Q 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-BF-A5EO-01 11 70332031 70332031 G A SHANK2 Missense_Mutation p.P1457L 0.29 deleterious(0.02) possibly_damaging(0.713) TCGA-BF-A5EO-01 11 72712089 72712089 G A FCHSD2 Silent p.F111F 0.32 TCGA-BF-A5EO-01 11 76922365 76922365 C T MYO7A Missense_Mutation p.P2074S 0.32 tolerated(0.5) probably_damaging(0.945) TCGA-BF-A5EO-01 11 7846641 7846641 C T OR5P3 Silent p.R293R 0.25 TCGA-BF-A5EO-01 11 7949405 7949405 C T OR10A6 Missense_Mutation p.E269K 0.34 tolerated(0.08) benign(0.213) TCGA-BF-A5EO-01 11 84634263 84634263 C T DLG2 Intron 0.31 TCGA-BF-A5EO-01 11 89911274 89911274 G A NAALAD2 Missense_Mutation p.G616E 0.28 tolerated(0.1) benign(0.005) TCGA-BF-A5EO-01 11 92600263 92600263 C T FAT3 Silent p.F4005F 0.35 TCGA-BF-A5EO-01 11 92624013 92624013 G A FAT3 Missense_Mutation p.E4502K 0.31 benign(0.014) TCGA-BF-A5EO-01 11 94800813 94800813 C G SRSF8 Missense_Mutation p.C141W 0.40 tolerated_low_confidence(0.15) unknown(0) TCGA-BF-A5EO-01 11 96086778 96086778 G A CCDC82 3'UTR 0.39 TCGA-BF-A5EO-01 11 993963 993963 C T AP2A2 Missense_Mutation p.T587I 0.33 tolerated(0.15) benign(0.084) TCGA-BF-A5EO-01 12 106903409 106903409 C T POLR3B 3'UTR 0.35 TCGA-BF-A5EO-01 12 109962285 109962285 T A UBE3B Missense_Mutation p.Y849N 0.20 tolerated(0.11) possibly_damaging(0.908) TCGA-BF-A5EO-01 12 110293508 110293508 G A GLTP Silent p.P121P 0.22 TCGA-BF-A5EO-01 12 113379536 113379536 C T OAS3 Silent p.V113V 0.31 TCGA-BF-A5EO-01 12 116406747 116406747 G A MED13L Missense_Mutation p.R2075W 0.31 deleterious(0) probably_damaging(0.994) TCGA-BF-A5EO-01 12 116418699 116418699 T C MED13L Silent p.Q1740Q 0.27 TCGA-BF-A5EO-01 12 122091042 122091042 C T MORN3 Missense_Mutation p.G196E 0.27 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EO-01 12 12247633 12247633 G A BCL2L14 Silent p.Q238Q 0.31 TCGA-BF-A5EO-01 12 122716903 122716903 G A VPS33A Silent p.L561L 0.34 TCGA-BF-A5EO-01 12 123339944 123339944 G A HIP1R Missense_Mutation p.E329K 0.44 tolerated(0.06) benign(0.354) TCGA-BF-A5EO-01 12 125609479 125609479 G A AACS Silent p.T406T 0.33 TCGA-BF-A5EO-01 12 128899666 128899666 G A TMEM132C Missense_Mutation p.D159N 0.47 tolerated(0.08) benign(0.248) TCGA-BF-A5EO-01 12 132195960 132195960 C T SFSWAP Silent p.P62P 0.29 TCGA-BF-A5EO-01 12 132426396 132426396 C T PUS1 Silent p.F368F 0.21 TCGA-BF-A5EO-01 12 132472256 132472256 C T EP400 Nonsense_Mutation p.Q744* 0.16 TCGA-BF-A5EO-01 12 15262184 15262184 C T RERG Missense_Mutation p.G154R 0.29 tolerated(0.06) probably_damaging(0.958) TCGA-BF-A5EO-01 12 16704236 16704236 G A LMO3 Silent p.L142L 0.26 TCGA-BF-A5EO-01 12 18644490 18644490 G A PIK3C2G Missense_Mutation p.D890N 0.29 tolerated(0.19) benign(0.082) TCGA-BF-A5EO-01 12 247572 247572 C A IQSEC3 Missense_Mutation p.P348Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 12 248368 248368 G A IQSEC3 Silent p.A613A 0.30 TCGA-BF-A5EO-01 12 33031240 33031240 G A PKP2 Missense_Mutation p.P192S 0.30 deleterious(0.02) possibly_damaging(0.87) TCGA-BF-A5EO-01 12 3702358 3702358 G A PRMT8 3'UTR 0.20 TCGA-BF-A5EO-01 12 41966399 41966399 C T PDZRN4 Silent p.L606L 0.29 TCGA-BF-A5EO-01 12 465607 465607 C T KDM5A Missense_Mutation p.D257N 0.30 tolerated(0.17) benign(0.004) TCGA-BF-A5EO-01 12 48387816 48387816 G A COL2A1 Silent p.F277F 0.28 TCGA-BF-A5EO-01 12 4854740 4854740 G A GALNT8 Missense_Mutation p.D336N 0.25 tolerated(0.06) probably_damaging(0.984) TCGA-BF-A5EO-01 12 48884601 48884601 G A C12orf54 Missense_Mutation p.E59K 0.28 deleterious(0.04) benign(0.182) TCGA-BF-A5EO-01 12 49176824 49176824 G A ADCY6 Missense_Mutation p.R132C 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-BF-A5EO-01 12 49424510 49424510 G A KMT2D Silent p.A4571A 0.23 TCGA-BF-A5EO-01 12 51723599 51723599 G A CELA1 Missense_Mutation p.L210F 0.47 deleterious(0.01) probably_damaging(1) TCGA-BF-A5EO-01 12 51723600 51723600 G A CELA1 Silent p.P209P 0.48 TCGA-BF-A5EO-01 12 56492231 56492231 C T ERBB3 Intron 0.28 TCGA-BF-A5EO-01 12 57441520 57441520 G A MYO1A Intron 0.27 TCGA-BF-A5EO-01 12 6760498 6760498 C T ING4 Silent p.R234R 0.21 TCGA-BF-A5EO-01 12 7551105 7551105 C T CD163L1 Missense_Mutation p.G495E 0.21 tolerated(0.08) probably_damaging(0.923) TCGA-BF-A5EO-01 12 7640269 7640269 C T CD163 Missense_Mutation p.R579K 0.25 tolerated(0.14) probably_damaging(0.997) TCGA-BF-A5EO-01 12 8211461 8211461 C T C3AR1 Missense_Mutation p.D441N 0.29 tolerated(0.07) benign(0.263) TCGA-BF-A5EO-01 12 8328461 8328461 G A ZNF705A Missense_Mutation p.E81K 0.27 tolerated(0.39) possibly_damaging(0.636) TCGA-BF-A5EO-01 12 8692467 8692467 G A CLEC4E Silent p.F38F 0.25 TCGA-BF-A5EO-01 12 8757435 8757435 G A AICDA Missense_Mutation p.R171C 0.30 tolerated(0.12) probably_damaging(0.946) TCGA-BF-A5EO-01 12 9227166 9227166 G A A2M Missense_Mutation p.S1249F 0.17 deleterious(0) possibly_damaging(0.77) TCGA-BF-A5EO-01 12 97045526 97045526 C T C12orf55 Missense_Mutation p.P1678L 0.21 tolerated(0.09) probably_damaging(0.943) TCGA-BF-A5EO-01 12 97112277 97112277 G A C12orf55 Missense_Mutation p.E2261K 0.28 tolerated(0.09) benign(0.001) TCGA-BF-A5EO-01 13 107145339 107145339 G A EFNB2 3'UTR 0.39 TCGA-BF-A5EO-01 13 110813696 110813696 G A COL4A1 Missense_Mutation p.R1495C 0.43 unknown(0) TCGA-BF-A5EO-01 13 25027774 25027774 G A PARP4 Missense_Mutation p.S926L 0.24 tolerated(0.15) benign(0.168) TCGA-BF-A5EO-01 13 28552275 28552275 C T URAD Missense_Mutation p.D164N 0.29 tolerated(0.09) possibly_damaging(0.469) TCGA-BF-A5EO-01 13 32937423 32937423 C T BRCA2 Missense_Mutation p.S2695L 0.31 deleterious(0.03) benign(0.155) TCGA-BF-A5EO-01 13 33635061 33635061 C T KL Silent p.I615I 0.26 TCGA-BF-A5EO-01 13 39546648 39546648 C T STOML3 Splice_Site p.X104_splice 0.26 TCGA-BF-A5EO-01 13 39585611 39585611 G A PROSER1 Missense_Mutation p.S909L 0.29 deleterious(0) benign(0.195) TCGA-BF-A5EO-01 13 76427398 76427398 C T LMO7 Missense_Mutation p.S1279F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A5EO-01 13 77862381 77862381 G A MYCBP2 Missense_Mutation p.A132V 0.32 benign(0.001) TCGA-BF-A5EO-01 13 78218450 78218450 G A SCEL 3'UTR 0.40 TCGA-BF-A5EO-01 13 99520598 99520598 G A DOCK9 Missense_Mutation p.H993Y 0.19 tolerated(0.25) benign(0.026) TCGA-BF-A5EO-01 14 100367345 100367345 G A EML1 Missense_Mutation p.R345Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-BF-A5EO-01 14 104026143 104026143 G A BAG5 3'UTR 0.29 TCGA-BF-A5EO-01 14 105415786 105415786 G A AHNAK2 Missense_Mutation p.S2001L 0.63 probably_damaging(0.995) TCGA-BF-A5EO-01 14 106110252 106110252 G A IGHG2 Silent p.F122F 0.27 TCGA-BF-A5EO-01 14 106320822 106320822 C T IGHM Missense_Mutation p.D330N 0.30 deleterious(0.01) benign(0.112) TCGA-BF-A5EO-01 14 19378023 19378023 C T OR11H12 Missense_Mutation p.P144S 0.19 deleterious(0) possibly_damaging(0.75) TCGA-BF-A5EO-01 14 20215898 20215898 C T OR4Q3 Silent p.F104F 0.33 TCGA-BF-A5EO-01 14 20248864 20248864 G A OR4M1 Missense_Mutation p.R128Q 0.34 tolerated(0.14) benign(0.011) TCGA-BF-A5EO-01 14 20248874 20248874 C T OR4M1 Silent p.H131H 0.25 TCGA-BF-A5EO-01 14 21058733 21058733 G A RNASE12 Silent p.I50I 0.29 TCGA-BF-A5EO-01 14 22337056 22337056 G A TRAV13-1 Missense_Mutation p.R5Q 0.33 tolerated(0.61) benign(0.003) TCGA-BF-A5EO-01 14 24737771 24737771 G A RABGGTA Missense_Mutation p.R319C 0.25 tolerated(0.09) benign(0.003) TCGA-BF-A5EO-01 14 30046618 30046618 G A PRKD1 Silent p.I855I 0.38 TCGA-BF-A5EO-01 14 34243604 34243604 C T NPAS3 Missense_Mutation p.P305L 0.24 tolerated(0.16) probably_damaging(0.981) TCGA-BF-A5EO-01 14 47343395 47343395 G A MDGA2 Missense_Mutation p.H816Y 0.22 tolerated(0.42) possibly_damaging(0.636) TCGA-BF-A5EO-01 14 47351283 47351283 C T MDGA2 Missense_Mutation p.E794K 0.28 tolerated(0.25) possibly_damaging(0.641) TCGA-BF-A5EO-01 14 56233240 56233240 G A RP11-813I20.2 Intron 0.28 TCGA-BF-A5EO-01 14 58831965 58831965 T C ARID4A Missense_Mutation p.V1053A 0.27 tolerated(0.41) benign(0) TCGA-BF-A5EO-01 14 70925764 70925764 G A ADAM21 Silent p.E516E 0.26 TCGA-BF-A5EO-01 14 73945388 73945388 G A HEATR4 Silent p.L1002L 0.30 TCGA-BF-A5EO-01 14 74973506 74973506 C T LTBP2 Missense_Mutation p.D1310N 0.38 tolerated(0.14) benign(0.056) TCGA-BF-A5EO-01 14 75514594 75514594 T C MLH3 Missense_Mutation p.N589D 0.34 tolerated(0.89) benign(0.002) TCGA-BF-A5EO-01 14 92047210 92047210 G A CATSPERB 3'UTR 0.33 TCGA-BF-A5EO-01 14 99183635 99183635 T G C14orf177 3'UTR 0.32 TCGA-BF-A5EO-01 15 100695516 100695516 C T ADAMTS17 Missense_Mutation p.M397I 0.33 tolerated(0.4) probably_damaging(0.985) TCGA-BF-A5EO-01 15 20496663 20496663 G A CHEK2P2 RNA 0.06 TCGA-BF-A5EO-01 15 22369294 22369294 C A OR4M2 Missense_Mutation p.S240Y 0.07 deleterious(0.01) probably_damaging(1) TCGA-BF-A5EO-01 15 22369295 22369295 C T OR4M2 Silent p.S240S 0.07 TCGA-BF-A5EO-01 15 23444741 23444741 C T AC100757.1 5'Flank 0.38 TCGA-BF-A5EO-01 15 23811429 23811429 C T MKRN3 Missense_Mutation p.S167F 0.27 tolerated(0.1) benign(0.03) TCGA-BF-A5EO-01 15 25432717 25432717 G A SNORD115-10 RNA 0.25 TCGA-BF-A5EO-01 15 28632748 28632748 G A GOLGA8F Missense_Mutation p.G439E 0.14 deleterious(0.04) probably_damaging(0.982) TCGA-BF-A5EO-01 15 31818595 31818595 C T OTUD7A Missense_Mutation p.E277K 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-BF-A5EO-01 15 34376625 34376625 G A EMC7 Silent p.F213F 0.27 TCGA-BF-A5EO-01 15 34657241 34657241 C T LPCAT4 Missense_Mutation p.R149Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 15 38792312 38792312 C T RASGRP1 Missense_Mutation p.R571Q 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-BF-A5EO-01 15 38852052 38852052 C T RASGRP1 Missense_Mutation p.D64N 0.30 tolerated(0.05) benign(0.04) TCGA-BF-A5EO-01 15 42678439 42678439 G A CAPN3 Missense_Mutation p.D152N 0.26 tolerated(0.08) probably_damaging(0.929) TCGA-BF-A5EO-01 15 43545011 43545011 A G TGM5 Missense_Mutation p.C270R 0.25 tolerated(0.27) probably_damaging(0.95) TCGA-BF-A5EO-01 15 44905706 44905706 C T SPG11 Missense_Mutation p.E1023K 0.24 tolerated(0.44) possibly_damaging(0.801) TCGA-BF-A5EO-01 15 45386255 45386255 G A DUOX2 3'UTR 0.38 TCGA-BF-A5EO-01 15 59910858 59910858 G A GCNT3 Missense_Mutation p.E141K 0.21 tolerated(0.59) possibly_damaging(0.474) TCGA-BF-A5EO-01 15 68695337 68695337 C T ITGA11 Silent p.R28R 0.29 TCGA-BF-A5EO-01 15 73889492 73889492 T C NPTN Missense_Mutation p.T104A 0.28 tolerated(0.83) benign(0.033) TCGA-BF-A5EO-01 15 75658870 75658870 G A MAN2C1 Missense_Mutation p.P139S 0.36 tolerated(0.21) benign(0.031) TCGA-BF-A5EO-01 15 77059387 77059387 G A SCAPER Missense_Mutation p.R431C 0.33 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 15 78308994 78308994 C T TBC1D2B Missense_Mutation p.D557N 0.44 tolerated(0.07) benign(0.103) TCGA-BF-A5EO-01 15 78789516 78789516 C T IREB2 Missense_Mutation p.H882Y 0.37 deleterious(0) possibly_damaging(0.873) TCGA-BF-A5EO-01 15 83931899 83931899 C T BNC1 Missense_Mutation p.E702K 0.26 tolerated(0.07) benign(0.405) TCGA-BF-A5EO-01 15 85345586 85345586 C T ZNF592 Nonsense_Mutation p.Q1256* 0.33 TCGA-BF-A5EO-01 15 90892177 90892177 G A GABARAPL3 Missense_Mutation p.P85S 0.18 deleterious(0.02) possibly_damaging(0.796) TCGA-BF-A5EO-01 15 93043706 93043706 C T C15orf32 3'UTR 0.20 TCGA-BF-A5EO-01 16 10032265 10032265 G A GRIN2A Silent p.F186F 0.22 TCGA-BF-A5EO-01 16 10626840 10626840 G A EMP2 Silent p.S142S 0.31 TCGA-BF-A5EO-01 16 11369717 11369717 T A PRM2 3'UTR 0.29 TCGA-BF-A5EO-01 16 14989377 14989377 C T NOMO1 Missense_Mutation p.P1182S 0.11 deleterious(0.02) probably_damaging(0.948) TCGA-BF-A5EO-01 16 18549973 18549973 G A NOMO2 Silent p.F365F 0.26 TCGA-BF-A5EO-01 16 19471648 19471648 G A TMC5 Silent p.R380R 0.25 TCGA-BF-A5EO-01 16 20043504 20043504 G A GPR139 Silent p.I205I 0.28 TCGA-BF-A5EO-01 16 21049287 21049287 G A DNAH3 Silent p.I1582I 0.26 TCGA-BF-A5EO-01 16 2161402 2161402 G A PKD1 Missense_Mutation p.P1256S 0.49 benign(0.023) TCGA-BF-A5EO-01 16 21817525 21817525 C T RRN3P1 RNA 0.16 TCGA-BF-A5EO-01 16 23392093 23392093 G A SCNN1B Missense_Mutation p.E632K 0.22 tolerated(0.06) benign(0.178) TCGA-BF-A5EO-01 16 24979739 24979739 G A ARHGAP17 Missense_Mutation p.P132S 0.26 deleterious(0) probably_damaging(0.944) TCGA-BF-A5EO-01 16 2577573 2577573 G A AMDHD2 Silent p.Q124Q 0.15 TCGA-BF-A5EO-01 16 27523134 27523134 G A GTF3C1 Silent p.S354S 0.31 TCGA-BF-A5EO-01 16 28515089 28515089 T C IL27 Missense_Mutation p.N77S 0.30 tolerated(0.67) benign(0.005) TCGA-BF-A5EO-01 16 30036947 30036947 G A FAM57B Intron 0.42 TCGA-BF-A5EO-01 16 3119200 3119200 G A IL32 Silent p.L137L 0.15 TCGA-BF-A5EO-01 16 31200468 31200468 C T FUS Missense_Mutation p.T286I 0.28 deleterious(0) benign(0.01) TCGA-BF-A5EO-01 16 32077589 32077589 C T IGHV3OR16-9 Silent p.F68F 0.22 TCGA-BF-A5EO-01 16 3533538 3533538 C T NAA60 Silent p.L171L 0.30 TCGA-BF-A5EO-01 16 3633373 3633373 G A SLX4 Silent p.C1626C 0.26 TCGA-BF-A5EO-01 16 3639116 3639116 G A SLX4 Missense_Mutation p.S1508L 0.28 deleterious(0.01) possibly_damaging(0.702) TCGA-BF-A5EO-01 16 48139061 48139061 C T ABCC12 Missense_Mutation p.V888M 0.24 tolerated(0.32) benign(0.057) TCGA-BF-A5EO-01 16 48595053 48595053 G A N4BP1 Missense_Mutation p.P501S 0.24 tolerated(0.6) benign(0.024) TCGA-BF-A5EO-01 16 4925420 4925420 G T UBN1 Silent p.S1003S 0.29 TCGA-BF-A5EO-01 16 51171094 51171094 T C SALL1 Missense_Mutation p.S1302G 0.21 tolerated(0.37) benign(0) TCGA-BF-A5EO-01 16 51172908 51172908 C T SALL1 Silent p.V1075V 0.21 TCGA-BF-A5EO-01 16 55703551 55703551 G A SLC6A2 Missense_Mutation p.G117R 0.30 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EO-01 16 55866937 55866937 G A CES1 Missense_Mutation p.L11F 0.22 tolerated(0.08) benign(0.011) TCGA-BF-A5EO-01 16 57918206 57918206 C T CNGB1 Silent p.G1206G 0.32 TCGA-BF-A5EO-01 16 57973383 57973383 C T CNGB1 Silent p.A441A 0.22 TCGA-BF-A5EO-01 16 601395 601395 C T CAPN15 Silent p.S720S 0.36 TCGA-BF-A5EO-01 16 67578595 67578595 C T FAM65A Intron 0.31 TCGA-BF-A5EO-01 16 67942837 67942837 G A PSKH1 Missense_Mutation p.C62Y 0.28 tolerated_low_confidence(1) benign(0) TCGA-BF-A5EO-01 16 68330389 68330389 G A SLC7A6 Silent p.K414K 0.30 TCGA-BF-A5EO-01 16 70889052 70889052 C T HYDIN Missense_Mutation p.G4141D 0.33 probably_damaging(0.982) TCGA-BF-A5EO-01 16 70894058 70894058 G A HYDIN Silent p.I4014I 0.18 TCGA-BF-A5EO-01 16 71416661 71416661 G A CALB2 Missense_Mutation p.E128K 0.35 tolerated(0.06) possibly_damaging(0.864) TCGA-BF-A5EO-01 16 71419532 71419532 T G CALB2 Missense_Mutation p.L227R 0.20 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EO-01 16 84270648 84270648 G A KCNG4 Silent p.A148A 0.28 TCGA-BF-A5EO-01 16 84485667 84485667 G A ATP2C2 Missense_Mutation p.G601R 0.22 deleterious(0) probably_damaging(0.98) TCGA-BF-A5EO-01 16 9857020 9857020 C T GRIN2A Missense_Mutation p.E1461K 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 17 10542495 10542495 G A MYH3 Silent p.S1038S 0.44 TCGA-BF-A5EO-01 17 1651889 1651889 C T SERPINF2 Intron 0.45 TCGA-BF-A5EO-01 17 26820625 26820625 G A SLC13A2 Silent p.Q354Q 0.43 TCGA-BF-A5EO-01 17 27014416 27014416 C T SUPT6H Missense_Mutation p.A978V 0.51 tolerated(0.27) benign(0.052) TCGA-BF-A5EO-01 17 27614140 27614140 C T NUFIP2 Missense_Mutation p.R291Q 0.50 tolerated(0.22) possibly_damaging(0.852) TCGA-BF-A5EO-01 17 27946784 27946784 C T CORO6 Missense_Mutation p.R69Q 0.34 deleterious(0) probably_damaging(0.968) TCGA-BF-A5EO-01 17 3101697 3101697 G A OR1A2 Missense_Mutation p.M295I 0.38 tolerated(0.16) benign(0.291) TCGA-BF-A5EO-01 17 3323897 3323897 G A OR3A3 Silent p.G12G 0.32 TCGA-BF-A5EO-01 17 33749577 33749577 A T SLFN12 Nonsense_Mutation p.Y157* 0.37 TCGA-BF-A5EO-01 17 3646845 3646845 C T ITGAE Missense_Mutation p.G796R 0.40 tolerated(0.14) benign(0.166) TCGA-BF-A5EO-01 17 37922615 37922615 G A IKZF3 Silent p.L320L 0.41 TCGA-BF-A5EO-01 17 46607832 46607832 C T HOXB1 Silent p.G145G 0.48 TCGA-BF-A5EO-01 17 46804105 46804105 C T HOXB13 3'UTR 0.58 TCGA-BF-A5EO-01 17 47684697 47684697 A G SPOP Missense_Mutation p.F251S 0.61 deleterious(0) possibly_damaging(0.872) TCGA-BF-A5EO-01 17 49075815 49075815 G A SPAG9 Missense_Mutation p.L610F 0.53 tolerated(0.41) possibly_damaging(0.89) TCGA-BF-A5EO-01 17 5424294 5424294 T A NLRP1 Silent p.R1274R 0.45 TCGA-BF-A5EO-01 17 61601503 61601503 G A KCNH6 Missense_Mutation p.R27Q 0.62 deleterious(0.01) possibly_damaging(0.872) TCGA-BF-A5EO-01 17 63049681 63049681 C T GNA13 Missense_Mutation p.R150K 0.55 tolerated(1) benign(0.001) TCGA-BF-A5EO-01 17 66878017 66878017 G A ABCA8 Silent p.F1271F 0.60 TCGA-BF-A5EO-01 17 67501979 67501979 C T MAP2K6 Silent p.T25T 0.65 TCGA-BF-A5EO-01 17 74136036 74136036 G A FOXJ1 Silent p.I147I 0.53 TCGA-BF-A5EO-01 17 7415147 7415147 C T POLR2A Silent p.A1373A 0.32 TCGA-BF-A5EO-01 17 74396312 74396312 G A UBE2O Silent p.F357F 0.67 TCGA-BF-A5EO-01 17 75212528 75212528 T A SEC14L1 Intron 0.61 TCGA-BF-A5EO-01 17 76388601 76388601 C T PGS1 Missense_Mutation p.P63L 0.63 tolerated_low_confidence(0.08) benign(0.144) TCGA-BF-A5EO-01 17 79633758 79633758 G A CCDC137 5'UTR 0.50 TCGA-BF-A5EO-01 17 79804344 79804344 G A P4HB Silent p.I339I 0.60 TCGA-BF-A5EO-01 17 8215376 8215376 C T ARHGEF15 Missense_Mutation p.P7S 0.32 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BF-A5EO-01 18 22057192 22057192 C T HRH4 Missense_Mutation p.S280F 0.28 tolerated(0.1) benign(0.076) TCGA-BF-A5EO-01 18 28723727 28723727 C T DSC1 Missense_Mutation p.E323K 0.35 tolerated(1) possibly_damaging(0.755) TCGA-BF-A5EO-01 18 28934556 28934556 C T DSG1 Silent p.I799I 0.30 TCGA-BF-A5EO-01 18 42532312 42532312 C T SETBP1 Missense_Mutation p.P1003S 0.24 tolerated(0.24) probably_damaging(0.999) TCGA-BF-A5EO-01 18 43219767 43219767 G A SLC14A2 Nonsense_Mutation p.W300* 0.22 TCGA-BF-A5EO-01 18 44555032 44555032 C T TCEB3C Silent p.R394R 0.03 TCGA-BF-A5EO-01 18 47777296 47777296 C T CCDC11 Silent p.K276K 0.24 TCGA-BF-A5EO-01 18 50450145 50450145 G A DCC Missense_Mutation p.D256N 0.27 tolerated(0.19) benign(0.014) TCGA-BF-A5EO-01 18 54283525 54283525 G A TXNL1 Silent p.F171F 0.30 TCGA-BF-A5EO-01 18 55143902 55143902 G A ONECUT2 Missense_Mutation p.D488N 0.21 deleterious(0.01) possibly_damaging(0.691) TCGA-BF-A5EO-01 18 6958589 6958589 C T LAMA1 Silent p.T2617T 0.21 TCGA-BF-A5EO-01 18 7231424 7231424 C T LRRC30 Silent p.I96I 0.32 TCGA-BF-A5EO-01 19 10203118 10203118 C T C19orf66 3'UTR 0.50 TCGA-BF-A5EO-01 19 10467247 10467247 G A TYK2 Missense_Mutation p.H872Y 0.50 deleterious(0.01) benign(0.001) TCGA-BF-A5EO-01 19 1061837 1061837 G C ABCA7 Silent p.V1840V 0.10 TCGA-BF-A5EO-01 19 11510634 11510634 G A RGL3 Missense_Mutation p.S554F 0.45 tolerated(0.06) unknown(0) TCGA-BF-A5EO-01 19 12790694 12790694 G A DHPS Missense_Mutation p.L139F 0.38 tolerated(0.78) benign(0.014) TCGA-BF-A5EO-01 19 1434875 1434875 C T DAZAP1 Silent p.N396N 0.38 TCGA-BF-A5EO-01 19 17918745 17918745 C T B3GNT3 Silent p.I43I 0.59 TCGA-BF-A5EO-01 19 18258322 18258322 C T MAST3 Silent p.S1094S 0.38 TCGA-BF-A5EO-01 19 19609482 19609482 C T GATAD2A Silent p.I385I 0.44 TCGA-BF-A5EO-01 19 19655535 19655535 C T CILP2 Silent p.F727F 0.36 TCGA-BF-A5EO-01 19 1987253 1987253 C T BTBD2 Splice_Site p.X394_splice 0.31 TCGA-BF-A5EO-01 19 2852977 2852977 C T ZNF555 Missense_Mutation p.S305L 0.42 tolerated(0.07) probably_damaging(0.998) TCGA-BF-A5EO-01 19 31040238 31040238 C T ZNF536 Missense_Mutation p.L1238F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-BF-A5EO-01 19 3382074 3382074 T C NFIC Missense_Mutation p.L132P 0.45 deleterious(0) probably_damaging(0.979) TCGA-BF-A5EO-01 19 3544651 3544651 G A MFSD12 Intron 0.41 TCGA-BF-A5EO-01 19 38877596 38877596 C T GGN Silent p.G102G 0.32 TCGA-BF-A5EO-01 19 39421443 39421443 G A SARS2 5'Flank 0.50 TCGA-BF-A5EO-01 19 39669151 39669151 C T PAK4 Missense_Mutation p.P570S 0.39 deleterious(0.02) possibly_damaging(0.839) TCGA-BF-A5EO-01 19 40433790 40433790 G A FCGBP Missense_Mutation p.A160V 0.23 possibly_damaging(0.604) TCGA-BF-A5EO-01 19 40704410 40704410 G A MAP3K10 Missense_Mutation p.A271T 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 19 41040036 41040036 G A SPTBN4 Missense_Mutation p.R1382Q 0.23 tolerated(0.37) benign(0.38) TCGA-BF-A5EO-01 19 41089354 41089354 C T SHKBP1 Silent p.L337L 0.51 TCGA-BF-A5EO-01 19 41133218 41133218 T A LTBP4 Missense_Mutation p.F1508I 0.31 tolerated(0.09) benign(0.188) TCGA-BF-A5EO-01 19 41381503 41381503 C T CYP2A7 3'UTR 0.42 TCGA-BF-A5EO-01 19 41381504 41381504 C T CYP2A7 3'UTR 0.42 TCGA-BF-A5EO-01 19 41596459 41596459 C T CYP2A13 Missense_Mutation p.S215F 0.41 tolerated(0.96) benign(0.138) TCGA-BF-A5EO-01 19 43233511 43233511 C T PSG3 Missense_Mutation p.R336K 0.40 tolerated(1) benign(0.217) TCGA-BF-A5EO-01 19 44006380 44006380 G A PHLDB3 Missense_Mutation p.S90L 0.21 tolerated(0.23) benign(0.001) TCGA-BF-A5EO-01 19 44681156 44681156 C T ZNF226 Missense_Mutation p.H581Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 19 45211443 45211443 G A CEACAM16 Silent p.V417V 0.29 TCGA-BF-A5EO-01 19 45515532 45515532 G A RELB Missense_Mutation p.E168K 0.18 tolerated(0.49) benign(0.1) TCGA-BF-A5EO-01 19 46375591 46375591 C T FOXA3 Missense_Mutation p.R110W 0.54 deleterious(0) probably_damaging(0.994) TCGA-BF-A5EO-01 19 46387810 46387810 G A IRF2BP1 Missense_Mutation p.P408L 0.49 deleterious(0.01) benign(0) TCGA-BF-A5EO-01 19 49249166 49249166 C T IZUMO1 5'UTR 0.16 TCGA-BF-A5EO-01 19 49316733 49316733 G A HSD17B14 Nonsense_Mutation p.R207* 0.48 TCGA-BF-A5EO-01 19 50464088 50464088 C T SIGLEC11 Missense_Mutation p.D61N 0.20 tolerated(0.53) benign(0.021) TCGA-BF-A5EO-01 19 51920686 51920686 C T SIGLEC10 Missense_Mutation p.R24Q 0.45 tolerated(1) benign(0.003) TCGA-BF-A5EO-01 19 53014449 53014449 G A ZNF578 Missense_Mutation p.R272Q 0.22 tolerated(0.15) benign(0) TCGA-BF-A5EO-01 19 53613139 53613139 G A ZNF415 Silent p.I53I 0.48 TCGA-BF-A5EO-01 19 53668893 53668893 G A ZNF665 Missense_Mutation p.H284Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EO-01 19 53668894 53668894 G A ZNF665 Silent p.I283I 0.18 TCGA-BF-A5EO-01 19 54782369 54782369 C T LILRB2 Missense_Mutation p.V335M 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-BF-A5EO-01 19 56223308 56223308 A C NLRP9 Missense_Mutation p.C901G 0.44 deleterious(0.02) possibly_damaging(0.69) TCGA-BF-A5EO-01 19 56538850 56538850 C T NLRP5 Silent p.L417L 0.40 TCGA-BF-A5EO-01 19 57176293 57176293 C T ZNF835 Missense_Mutation p.E92K 0.39 tolerated(0.58) benign(0) TCGA-BF-A5EO-01 19 5729895 5729895 T C CATSPERD Silent p.F72F 0.38 TCGA-BF-A5EO-01 19 57931750 57931750 C T ZNF17 Missense_Mutation p.T297I 0.39 deleterious(0.02) benign(0.128) TCGA-BF-A5EO-01 19 57931751 57931751 C T ZNF17 Silent p.T297T 0.40 TCGA-BF-A5EO-01 19 5831954 5831954 A T FUT6 Missense_Mutation p.Y209N 0.34 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EO-01 19 5917990 5917990 G A RANBP3 Missense_Mutation p.A492V 0.41 deleterious(0.01) benign(0.257) TCGA-BF-A5EO-01 19 9021104 9021104 G A MUC16 Missense_Mutation p.H12407Y 0.41 possibly_damaging(0.679) TCGA-BF-A5EO-01 19 9062082 9062082 G A MUC16 Missense_Mutation p.S8455F 0.46 unknown(0) TCGA-BF-A5EO-01 19 9063434 9063434 G A MUC16 Silent p.L8004L 0.45 TCGA-BF-A5EO-01 19 9204622 9204622 G A OR1M1 Silent p.R234R 0.41 TCGA-BF-A5EO-01 1 100358008 100358008 C T AGL Missense_Mutation p.T1035I 0.35 deleterious(0.04) benign(0.043) TCGA-BF-A5EO-01 1 10228256 10228256 C T UBE4B Silent p.L1087L 0.24 TCGA-BF-A5EO-01 1 103364301 103364301 C T COL11A1 Missense_Mutation p.G1390E 0.41 unknown(0) TCGA-BF-A5EO-01 1 109486135 109486135 G A CLCC1 Silent p.L222L 0.37 TCGA-BF-A5EO-01 1 110257957 110257957 C G GSTM5 Intron 0.40 TCGA-BF-A5EO-01 1 111434029 111434029 G A CD53 5'UTR 0.43 TCGA-BF-A5EO-01 1 111778645 111778645 G A CHI3L2 Splice_Site p.X202_splice 0.23 TCGA-BF-A5EO-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.43 tolerated(0.06) benign(0.006) TCGA-BF-A5EO-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.44 deleterious(0.01) benign(0.045) TCGA-BF-A5EO-01 1 117131439 117131439 C T IGSF3 Missense_Mutation p.E793K 0.43 tolerated(0.07) benign(0.028) TCGA-BF-A5EO-01 1 117576512 117576512 C T CD101 Missense_Mutation p.S952L 0.26 deleterious(0) probably_damaging(0.957) TCGA-BF-A5EO-01 1 118042086 118042086 C T MAN1A2 Silent p.I529I 0.49 TCGA-BF-A5EO-01 1 1267424 1267424 G A TAS1R3 Missense_Mutation p.M171I 0.38 tolerated(0.07) benign(0.009) TCGA-BF-A5EO-01 1 12806356 12806356 G A C1orf158 5'UTR 0.47 TCGA-BF-A5EO-01 1 13522179 13522179 G A PRAMEF21 Silent p.L69L 0.83 TCGA-BF-A5EO-01 1 144906172 144906172 G A PDE4DIP Missense_Mutation p.P821S 0.31 deleterious(0) probably_damaging(0.982) TCGA-BF-A5EO-01 1 145555821 145555821 C T ANKRD35 Missense_Mutation p.P57S 0.26 tolerated(0.25) possibly_damaging(0.876) TCGA-BF-A5EO-01 1 149916868 149916868 T G OTUD7B Missense_Mutation p.S474R 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-BF-A5EO-01 1 151015839 151015839 C T BNIPL Silent p.I216I 0.30 TCGA-BF-A5EO-01 1 151259502 151259502 C T ZNF687 Silent p.A245A 0.27 TCGA-BF-A5EO-01 1 151316257 151316257 G A RFX5 Silent p.S219S 0.26 TCGA-BF-A5EO-01 1 151748675 151748675 G A TDRKH Nonsense_Mutation p.R372* 0.29 TCGA-BF-A5EO-01 1 152191721 152191721 C T HRNR Missense_Mutation p.G795E 0.24 unknown(0) TCGA-BF-A5EO-01 1 152732438 152732438 C T KPRP Missense_Mutation p.S125L 0.24 deleterious(0) benign(0.209) TCGA-BF-A5EO-01 1 153318628 153318628 G A PGLYRP4 Missense_Mutation p.S30L 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BF-A5EO-01 1 15382650 15382650 G A KAZN Missense_Mutation p.G264S 0.36 tolerated(0.65) probably_damaging(0.997) TCGA-BF-A5EO-01 1 154918442 154918442 G A PBXIP1 Missense_Mutation p.P570S 0.34 tolerated(0.34) benign(0.016) TCGA-BF-A5EO-01 1 154931155 154931155 G A PYGO2 3'UTR 0.33 TCGA-BF-A5EO-01 1 155307494 155307494 C T ASH1L Missense_Mutation p.R2951Q 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BF-A5EO-01 1 156641102 156641102 C T NES Missense_Mutation p.E960K 0.25 tolerated(0.07) possibly_damaging(0.529) TCGA-BF-A5EO-01 1 156955918 156955918 G A ARHGEF11 Missense_Mutation p.S27F 0.22 deleterious(0.02) probably_damaging(0.914) TCGA-BF-A5EO-01 1 157490960 157490960 G A FCRL5 Missense_Mutation p.H788Y 0.29 tolerated(0.06) benign(0.35) TCGA-BF-A5EO-01 1 157556172 157556172 G A FCRL4 Silent p.V307V 0.19 TCGA-BF-A5EO-01 1 157666023 157666023 C T FCRL3 Silent p.Q313Q 0.32 TCGA-BF-A5EO-01 1 158615002 158615002 G A SPTA1 Silent p.I1390I 0.32 TCGA-BF-A5EO-01 1 158812100 158812100 G A MNDA Missense_Mutation p.E53K 0.27 deleterious(0.04) possibly_damaging(0.795) TCGA-BF-A5EO-01 1 159175744 159175744 G A DARC Missense_Mutation p.G174E 0.22 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EO-01 1 159898079 159898079 G A IGSF9 Silent p.F1033F 0.32 TCGA-BF-A5EO-01 1 161721528 161721528 G A DUSP12 Missense_Mutation p.E139K 0.26 tolerated(0.08) possibly_damaging(0.733) TCGA-BF-A5EO-01 1 16386095 16386095 G A FAM131C Silent p.V152V 0.50 TCGA-BF-A5EO-01 1 167096131 167096131 C T DUSP27 Missense_Mutation p.A588V 0.25 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 1 167365645 167365645 G A POU2F1 Silent p.E370E 0.26 TCGA-BF-A5EO-01 1 169521893 169521893 C T F5 Missense_Mutation p.E400K 0.22 tolerated(0.45) benign(0.021) TCGA-BF-A5EO-01 1 169586468 169586468 C T SELP Silent p.G93G 0.32 TCGA-BF-A5EO-01 1 176175769 176175769 G A RFWD2 Missense_Mutation p.L116F 0.25 tolerated(0.64) benign(0.086) TCGA-BF-A5EO-01 1 18023889 18023889 C T ARHGEF10L 3'UTR 0.26 TCGA-BF-A5EO-01 1 185200722 185200722 C T SWT1 Nonsense_Mutation p.Q775* 0.24 TCGA-BF-A5EO-01 1 18808226 18808226 C T KLHDC7A Nonsense_Mutation p.Q251* 0.52 TCGA-BF-A5EO-01 1 19513075 19513075 T C UBR4 Missense_Mutation p.Y570C 0.18 probably_damaging(0.985) TCGA-BF-A5EO-01 1 196928252 196928252 G A CFHR2 3'UTR 0.33 TCGA-BF-A5EO-01 1 197390888 197390888 C T CRB1 Nonsense_Mutation p.Q644* 0.34 TCGA-BF-A5EO-01 1 198700853 198700853 C T PTPRC Nonsense_Mutation p.Q658* 0.20 TCGA-BF-A5EO-01 1 200978057 200978057 G A KIF21B Missense_Mutation p.T96I 0.29 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EO-01 1 202270324 202270324 G T LGR6 Missense_Mutation p.G297V 0.26 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EO-01 1 202569573 202569573 G A SYT2 Silent p.S277S 0.27 TCGA-BF-A5EO-01 1 205550024 205550024 C T MFSD4 Missense_Mutation p.A222V 0.32 deleterious(0.05) probably_damaging(0.991) TCGA-BF-A5EO-01 1 207072772 207072772 G A IL24 Missense_Mutation p.G52D 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-BF-A5EO-01 1 211654464 211654464 G A RD3 Silent p.L98L 0.25 TCGA-BF-A5EO-01 1 214814194 214814194 C T CENPF Missense_Mutation p.S838L 0.21 benign(0.024) TCGA-BF-A5EO-01 1 214818462 214818462 C T CENPF Missense_Mutation p.S1850F 0.23 possibly_damaging(0.885) TCGA-BF-A5EO-01 1 215802155 215802155 C T USH2A Splice_Site p.X5173_splice 0.29 TCGA-BF-A5EO-01 1 215990380 215990380 C T USH2A Missense_Mutation p.E3177K 0.30 benign(0.005) TCGA-BF-A5EO-01 1 21801390 21801390 C T NBPF3 Intron 0.17 TCGA-BF-A5EO-01 1 222800959 222800959 C T MIA3 Missense_Mutation p.H133Y 0.21 deleterious(0) benign(0.001) TCGA-BF-A5EO-01 1 225702403 225702403 G A ENAH Silent p.P371P 0.39 TCGA-BF-A5EO-01 1 233394471 233394471 C T PCNXL2 Silent p.T379T 0.31 TCGA-BF-A5EO-01 1 23417983 23417983 C T LUZP1 Nonsense_Mutation p.W924* 0.19 TCGA-BF-A5EO-01 1 235505883 235505883 C T GGPS1 Silent p.I233I 0.32 TCGA-BF-A5EO-01 1 24124207 24124207 C T GALE Missense_Mutation p.R169Q 0.39 tolerated(0.29) benign(0.003) TCGA-BF-A5EO-01 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.17 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EO-01 1 2418717 2418717 C T PLCH2 Missense_Mutation p.S312L 0.18 deleterious(0) possibly_damaging(0.703) TCGA-BF-A5EO-01 1 246755189 246755189 C T CNST Missense_Mutation p.P109S 0.37 tolerated(0.28) benign(0.014) TCGA-BF-A5EO-01 1 247587996 247587996 C T NLRP3 Silent p.I417I 0.24 TCGA-BF-A5EO-01 1 248309366 248309366 G A OR2M5 Missense_Mutation p.G306E 0.28 tolerated(0.14) benign(0.027) TCGA-BF-A5EO-01 1 248616347 248616347 C T OR2T2 Silent p.L83L 0.09 TCGA-BF-A5EO-01 1 248616555 248616555 G A OR2T2 Missense_Mutation p.G153S 0.15 deleterious(0.02) benign(0.396) TCGA-BF-A5EO-01 1 248737528 248737528 C T OR2T34 Silent p.R177R 0.14 TCGA-BF-A5EO-01 1 248802311 248802311 G A OR2T35 Silent p.L83L 0.57 TCGA-BF-A5EO-01 1 28559472 28559472 C T DNAJC8 Missense_Mutation p.G13E 0.44 tolerated(0.8) unknown(0) TCGA-BF-A5EO-01 1 29185756 29185756 G A OPRD1 Nonsense_Mutation p.W173* 0.28 TCGA-BF-A5EO-01 1 29365824 29365824 C T EPB41 Nonsense_Mutation p.R508* 0.47 TCGA-BF-A5EO-01 1 32671259 32671259 G A IQCC 5'UTR 0.15 TCGA-BF-A5EO-01 1 32671260 32671260 G A IQCC 5'UTR 0.15 TCGA-BF-A5EO-01 1 33797050 33797050 C T PHC2 Silent p.E634E 0.23 TCGA-BF-A5EO-01 1 39950280 39950280 C T MACF1 Missense_Mutation p.P5305L 0.43 benign(0.059) TCGA-BF-A5EO-01 1 42619156 42619156 G A GUCA2B Missense_Mutation p.G12E 0.28 tolerated(0.28) probably_damaging(0.972) TCGA-BF-A5EO-01 1 43664154 43664154 C T WDR65 Missense_Mutation p.T422I 0.19 deleterious(0.02) benign(0.271) TCGA-BF-A5EO-01 1 53453786 53453786 G A SCP2 Silent p.K353K 0.37 TCGA-BF-A5EO-01 1 55118820 55118820 G A MROH7 Missense_Mutation p.G74D 0.18 tolerated_low_confidence(0.11) benign(0.117) TCGA-BF-A5EO-01 1 55183172 55183172 C T TTC4 Silent p.A79A 0.20 TCGA-BF-A5EO-01 1 57170117 57170117 G A PRKAA2 Missense_Mutation p.R421Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 1 57422547 57422547 G A C8B Missense_Mutation p.H96Y 0.22 tolerated(0.92) benign(0.001) TCGA-BF-A5EO-01 1 62740659 62740659 G A KANK4 Silent p.F39F 0.43 TCGA-BF-A5EO-01 1 75097501 75097501 G A C1orf173 Missense_Mutation p.P239S 0.31 deleterious(0.05) benign(0.401) TCGA-BF-A5EO-01 1 79470814 79470814 C T ELTD1 Missense_Mutation p.G38E 0.21 deleterious_low_confidence(0.05) benign(0.224) TCGA-BF-A5EO-01 1 82409042 82409042 G A LPHN2 Missense_Mutation p.D263N 0.24 tolerated(0.05) probably_damaging(0.987) TCGA-BF-A5EO-01 1 84386806 84386806 C T TTLL7 Missense_Mutation p.R443Q 0.15 tolerated(0.29) benign(0.003) TCGA-BF-A5EO-01 1 84867744 84867744 G A DNASE2B Missense_Mutation p.E96K 0.54 tolerated(0.31) benign(0.02) TCGA-BF-A5EO-01 1 86241388 86241388 G A COL24A1 Missense_Mutation p.P1448L 0.26 deleterious(0.04) benign(0.023) TCGA-BF-A5EO-01 1 89448462 89448462 G A RBMXL1 Missense_Mutation p.P350S 0.23 tolerated(0.13) probably_damaging(0.997) TCGA-BF-A5EO-01 1 89524524 89524524 C T GBP1 Missense_Mutation p.G211S 0.53 deleterious(0.01) possibly_damaging(0.898) TCGA-BF-A5EO-01 1 90179668 90179668 C T LRRC8C Silent p.L513L 0.39 TCGA-BF-A5EO-01 1 9107695 9107695 G A SLC2A5 Missense_Mutation p.S131F 0.49 deleterious(0) probably_damaging(0.932) TCGA-BF-A5EO-01 1 93299188 93299188 C T RPL5 Missense_Mutation p.R54C 0.15 tolerated(0.09) possibly_damaging(0.792) TCGA-BF-A5EO-01 1 94140312 94140312 G A BCAR3 Missense_Mutation p.P59S 0.47 tolerated_low_confidence(0.12) possibly_damaging(0.503) TCGA-BF-A5EO-01 20 1145057 1145057 C T PSMF1 Missense_Mutation p.P234L 0.30 tolerated(0.05) possibly_damaging(0.631) TCGA-BF-A5EO-01 20 13107318 13107318 C T SPTLC3 Silent p.I411I 0.32 TCGA-BF-A5EO-01 20 13856728 13856728 T A SEL1L2 Missense_Mutation p.N354Y 0.34 deleterious(0) probably_damaging(0.976) TCGA-BF-A5EO-01 20 18491603 18491603 C T SEC23B Missense_Mutation p.L42F 0.31 tolerated(0.27) benign(0) TCGA-BF-A5EO-01 20 1960778 1960778 C T PDYN 3'UTR 0.36 TCGA-BF-A5EO-01 20 1963747 1963747 C T PDYN Intron 0.28 TCGA-BF-A5EO-01 20 20322509 20322509 C T C20orf26 Missense_Mutation p.H1153Y 0.23 deleterious(0) probably_damaging(0.989) TCGA-BF-A5EO-01 20 210035 210035 G A DEFB129 Missense_Mutation p.V59M 0.31 tolerated(0.08) benign(0.341) TCGA-BF-A5EO-01 20 21695464 21695464 C T PAX1 3'UTR 0.30 TCGA-BF-A5EO-01 20 29993967 29993967 G A DEFB121 5'UTR 0.16 TCGA-BF-A5EO-01 20 30584627 30584627 C T XKR7 Silent p.I369I 0.25 TCGA-BF-A5EO-01 20 3129243 3129243 G A FASTKD5 Silent p.L158L 0.23 TCGA-BF-A5EO-01 20 31805352 31805352 C T BPIFA3 Missense_Mutation p.P4S 0.24 tolerated(0.13) probably_damaging(0.992) TCGA-BF-A5EO-01 20 3305562 3305562 C T C20orf194 Silent p.L414L 0.24 TCGA-BF-A5EO-01 20 33451239 33451239 G A GGT7 Silent p.S94S 0.33 TCGA-BF-A5EO-01 20 33451240 33451240 G A GGT7 Missense_Mutation p.S94F 0.34 deleterious(0) possibly_damaging(0.801) TCGA-BF-A5EO-01 20 35433142 35433142 G A SOGA1 Missense_Mutation p.S1028F 0.31 deleterious(0.01) benign(0.301) TCGA-BF-A5EO-01 20 3655274 3655274 C T ADAM33 Silent p.K159K 0.25 TCGA-BF-A5EO-01 20 42893136 42893136 G A GDAP1L1 Missense_Mutation p.E233K 0.28 deleterious(0) benign(0.331) TCGA-BF-A5EO-01 20 43703661 43703661 T A STK4 Silent p.L436L 0.30 TCGA-BF-A5EO-01 20 50401160 50401160 C T SALL4 Missense_Mutation p.E936K 0.32 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EO-01 20 57599404 57599404 G A TUBB1 Missense_Mutation p.G308S 0.32 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BF-A5EO-01 20 57768332 57768332 G A ZNF831 Missense_Mutation p.G753E 0.12 tolerated(0.37) benign(0.004) TCGA-BF-A5EO-01 20 57771051 57771051 A G ZNF831 Missense_Mutation p.N1289S 0.26 tolerated(0.48) benign(0.01) TCGA-BF-A5EO-01 20 5904235 5904235 A C CHGB Missense_Mutation p.K482T 0.33 deleterious(0) probably_damaging(0.932) TCGA-BF-A5EO-01 20 60504852 60504852 G A CDH4 Missense_Mutation p.G731S 0.23 deleterious(0.03) benign(0.222) TCGA-BF-A5EO-01 20 61460144 61460144 G A COL9A3 Missense_Mutation p.G310D 0.25 deleterious(0) possibly_damaging(0.821) TCGA-BF-A5EO-01 20 6758923 6758923 G A BMP2 Silent p.G126G 0.24 TCGA-BF-A5EO-01 21 11047490 11047490 C T BAGE2 RNA 0.03 TCGA-BF-A5EO-01 21 17911434 17911434 G A MIR99A RNA 0.38 TCGA-BF-A5EO-01 21 19629025 19629025 G A CHODL Silent p.G93G 0.30 TCGA-BF-A5EO-01 21 30959841 30959841 T C GRIK1 Silent p.K546K 0.19 TCGA-BF-A5EO-01 21 34011345 34011345 G A SYNJ1 Missense_Mutation p.P1302L 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A5EO-01 21 34889332 34889332 G A GART Missense_Mutation p.P691S 0.28 tolerated(0.27) benign(0.352) TCGA-BF-A5EO-01 21 42080414 42080414 C T DSCAM Silent p.G109G 0.30 TCGA-BF-A5EO-01 21 42720522 42720522 G A FAM3B Silent p.L163L 0.25 TCGA-BF-A5EO-01 21 43496154 43496154 C T UMODL1 Silent p.H39H 0.27 TCGA-BF-A5EO-01 21 43543152 43543152 C T UMODL1 Silent p.P1141P 0.24 TCGA-BF-A5EO-01 21 45833813 45833813 C T TRPM2 Missense_Mutation p.T1001I 0.27 deleterious(0.03) probably_damaging(0.986) TCGA-BF-A5EO-01 22 16279248 16279248 C T POTEH Silent p.V325V 0.07 TCGA-BF-A5EO-01 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.15 deleterious(0.01) possibly_damaging(0.461) TCGA-BF-A5EO-01 22 16449601 16449601 C T OR11H1 Silent p.R68R 0.16 TCGA-BF-A5EO-01 22 24210747 24210747 G A AP000350.10 Nonsense_Mutation p.W32* 0.20 TCGA-BF-A5EO-01 22 25019811 25019811 C T GGT1 Silent p.I316I 0.33 TCGA-BF-A5EO-01 22 29885700 29885700 C T NEFH Missense_Mutation p.P691S 0.28 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-BF-A5EO-01 22 31137252 31137252 G A OSBP2 Missense_Mutation p.R250K 0.30 tolerated(0.16) benign(0.122) TCGA-BF-A5EO-01 22 32795727 32795727 C T RTCB Missense_Mutation p.E173K 0.36 tolerated(0.4) benign(0.196) TCGA-BF-A5EO-01 22 35948130 35948130 C T RASD2 3'UTR 0.20 TCGA-BF-A5EO-01 22 37888527 37888527 G A CARD10 Missense_Mutation p.S889F 0.26 tolerated(0.1) benign(0.044) TCGA-BF-A5EO-01 22 38121538 38121538 C T TRIOBP Missense_Mutation p.S992F 0.25 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-BF-A5EO-01 22 42043032 42043032 C T XRCC6 Silent p.T302T 0.22 TCGA-BF-A5EO-01 22 42264749 42264749 C T SREBF2 Missense_Mutation p.P225S 0.31 tolerated(0.13) probably_damaging(0.998) TCGA-BF-A5EO-01 22 43015929 43015929 G A CYB5R3 Silent p.F285F 0.21 TCGA-BF-A5EO-01 22 43568488 43568488 G A TTLL12 Missense_Mutation p.R472C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 22 43610098 43610098 C T SCUBE1 Missense_Mutation p.G684E 0.28 tolerated(0.11) benign(0.049) TCGA-BF-A5EO-01 22 44495982 44495982 C T PARVB Silent p.P117P 0.26 TCGA-BF-A5EO-01 22 45244825 45244825 C T ARHGAP8 Silent p.N376N 0.28 TCGA-BF-A5EO-01 22 50705198 50705198 G A MAPK11 Intron 0.42 TCGA-BF-A5EO-01 2 103136319 103136319 G A SLC9A4 Missense_Mutation p.A575T 0.29 tolerated(0.55) benign(0.008) TCGA-BF-A5EO-01 2 103324827 103324827 C T SLC9A2 Missense_Mutation p.S773F 0.26 tolerated(0.84) benign(0) TCGA-BF-A5EO-01 2 103324959 103324959 G A SLC9A2 3'UTR 0.19 TCGA-BF-A5EO-01 2 113316988 113316988 C A POLR1B Silent p.T483T 0.25 TCGA-BF-A5EO-01 2 113498400 113498400 G A CKAP2L Silent p.I669I 0.26 TCGA-BF-A5EO-01 2 128051703 128051703 C T ERCC3 5'UTR 0.21 TCGA-BF-A5EO-01 2 128183787 128183787 G A PROC Missense_Mutation p.G221E 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 2 128477336 128477336 G A WDR33 Missense_Mutation p.P755S 0.29 tolerated_low_confidence(0.16) unknown(0) TCGA-BF-A5EO-01 2 130832859 130832859 G A POTEF Missense_Mutation p.A729V 0.15 deleterious_low_confidence(0.03) probably_damaging(0.959) TCGA-BF-A5EO-01 2 131988408 131988408 G A POTEE Splice_Site p.X352_splice 0.26 TCGA-BF-A5EO-01 2 132021425 132021425 G A POTEE Silent p.E799E 0.28 TCGA-BF-A5EO-01 2 137814438 137814438 G A THSD7B Silent p.G196G 0.28 TCGA-BF-A5EO-01 2 152499796 152499796 C T NEB Silent p.E2676E 0.32 TCGA-BF-A5EO-01 2 1544456 1544456 G A TPO Silent p.G903G 0.22 TCGA-BF-A5EO-01 2 158272629 158272629 C T CYTIP Missense_Mutation p.E214K 0.29 tolerated(0.15) possibly_damaging(0.697) TCGA-BF-A5EO-01 2 159481464 159481464 C T PKP4 Silent p.I226I 0.29 TCGA-BF-A5EO-01 2 166847944 166847944 G A SCN1A Silent p.I1947I 0.23 TCGA-BF-A5EO-01 2 166848128 166848128 C T SCN1A Missense_Mutation p.R1886Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 2 168098385 168098385 G T XIRP2 Missense_Mutation p.D381Y 0.31 probably_damaging(0.967) TCGA-BF-A5EO-01 2 168104985 168104985 G A XIRP2 Silent p.S2361S 0.31 TCGA-BF-A5EO-01 2 168726479 168726479 A T B3GALT1 Missense_Mutation p.E310D 0.17 tolerated(0.07) benign(0.411) TCGA-BF-A5EO-01 2 170028587 170028587 G A LRP2 Missense_Mutation p.P3734L 0.29 probably_damaging(1) TCGA-BF-A5EO-01 2 170062890 170062890 G A LRP2 Missense_Mutation p.S2447F 0.30 possibly_damaging(0.563) TCGA-BF-A5EO-01 2 172325474 172325474 C T DCAF17 Silent p.I305I 0.26 TCGA-BF-A5EO-01 2 173341226 173341226 C T ITGA6 Missense_Mutation p.S458L 0.17 deleterious(0) benign(0.299) TCGA-BF-A5EO-01 2 174228117 174228117 C T CDCA7 Missense_Mutation p.S183F 0.32 deleterious(0) probably_damaging(0.951) TCGA-BF-A5EO-01 2 174231943 174231943 G A CDCA7 Silent p.R417R 0.27 TCGA-BF-A5EO-01 2 176995396 176995396 C T HOXD8 Missense_Mutation p.P101L 0.31 tolerated(0.3) benign(0.009) TCGA-BF-A5EO-01 2 179411033 179411033 G A TTN Silent p.I31675I 0.29 TCGA-BF-A5EO-01 2 179433090 179433090 G A TTN Silent p.I25923I 0.33 TCGA-BF-A5EO-01 2 179437931 179437931 G A TTN Missense_Mutation p.P24310S 0.31 TCGA-BF-A5EO-01 2 179472716 179472716 C T TTN Missense_Mutation p.E17600K 0.28 TCGA-BF-A5EO-01 2 179482797 179482797 G A TTN Missense_Mutation p.P15761S 0.29 TCGA-BF-A5EO-01 2 179516237 179516237 G A TTN Missense_Mutation p.P13164S 0.32 TCGA-BF-A5EO-01 2 179578785 179578785 C T TTN Missense_Mutation p.G8867E 0.31 TCGA-BF-A5EO-01 2 179584887 179584887 A C TTN Missense_Mutation p.W7828G 0.26 TCGA-BF-A5EO-01 2 179589021 179589021 C T TTN Silent p.G7027G 0.26 TCGA-BF-A5EO-01 2 179604119 179604119 T A TTN Missense_Mutation p.D4614V 0.29 TCGA-BF-A5EO-01 2 179613305 179613305 G A TTN Intron 0.35 TCGA-BF-A5EO-01 2 179621163 179621163 G A TTN Silent p.L3680L 0.32 TCGA-BF-A5EO-01 2 179644172 179644172 G A TTN Silent p.S1249S 0.21 TCGA-BF-A5EO-01 2 182403895 182403895 C T CERKL Missense_Mutation p.E514K 0.27 tolerated(0.54) benign(0.15) TCGA-BF-A5EO-01 2 183960311 183960311 C T DUSP19 Silent p.F193F 0.25 TCGA-BF-A5EO-01 2 186672385 186672385 G C FSIP2 Missense_Mutation p.V6207L 0.26 possibly_damaging(0.694) TCGA-BF-A5EO-01 2 188210940 188210940 G A CALCRL Missense_Mutation p.L453F 0.12 tolerated_low_confidence(0.51) benign(0) TCGA-BF-A5EO-01 2 192011397 192011397 G A STAT4 Missense_Mutation p.S72F 0.30 tolerated(0.14) possibly_damaging(0.789) TCGA-BF-A5EO-01 2 196545520 196545520 C T SLC39A10 Missense_Mutation p.P252S 0.22 tolerated(0.45) benign(0.002) TCGA-BF-A5EO-01 2 196738347 196738347 C T DNAH7 Missense_Mutation p.D2120N 0.30 deleterious(0.04) benign(0.118) TCGA-BF-A5EO-01 2 202319553 202319553 A T STRADB 5'UTR 0.28 TCGA-BF-A5EO-01 2 203071997 203071997 C T SUMO1 Silent p.T95T 0.26 TCGA-BF-A5EO-01 2 207605808 207605808 C T MDH1B Missense_Mutation p.D477N 0.26 tolerated_low_confidence(0.2) benign(0.001) TCGA-BF-A5EO-01 2 21228939 21228939 G A APOB Nonsense_Mutation p.Q3601* 0.22 TCGA-BF-A5EO-01 2 21238001 21238001 G A APOB Missense_Mutation p.H1214Y 0.31 benign(0.001) TCGA-BF-A5EO-01 2 214354804 214354804 C T SPAG16 Missense_Mutation p.P354S 0.31 tolerated(0.44) benign(0.038) TCGA-BF-A5EO-01 2 218954738 218954738 C T RUFY4 3'UTR 0.31 TCGA-BF-A5EO-01 2 218954739 218954739 C T RUFY4 3'UTR 0.31 TCGA-BF-A5EO-01 2 220370991 220370991 C T GMPPA Silent p.L337L 0.31 TCGA-BF-A5EO-01 2 220498118 220498118 C T SLC4A3 Missense_Mutation p.T494I 0.29 tolerated(0.32) benign(0.046) TCGA-BF-A5EO-01 2 228886493 228886493 C T SPHKAP Missense_Mutation p.E211K 0.28 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 2 228973656 228973656 C T SPHKAP Splice_Site p.X47_splice 0.22 TCGA-BF-A5EO-01 2 230923926 230923926 A C SLC16A14 Missense_Mutation p.M48R 0.33 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 2 238296450 238296450 G A COL6A3 Missense_Mutation p.R363C 0.29 probably_damaging(0.973) TCGA-BF-A5EO-01 2 25799845 25799845 G A DTNB Silent p.C246C 0.18 TCGA-BF-A5EO-01 2 25966851 25966851 G A ASXL2 Silent p.V785V 0.22 TCGA-BF-A5EO-01 2 26739304 26739304 C T OTOF Missense_Mutation p.G164E 0.29 tolerated(0.32) possibly_damaging(0.632) TCGA-BF-A5EO-01 2 29462581 29462581 G A ALK Silent p.L774L 0.23 TCGA-BF-A5EO-01 2 48873664 48873664 C T STON1-GTF2A1L Missense_Mutation p.P858L 0.33 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 2 48915545 48915545 C T LHCGR Missense_Mutation p.R464K 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 2 56145039 56145039 C T EFEMP1 Missense_Mutation p.G93E 0.27 tolerated(1) benign(0.008) TCGA-BF-A5EO-01 2 71755525 71755525 G A DYSF Silent p.G458G 0.25 TCGA-BF-A5EO-01 2 74466461 74466461 C T SLC4A5 Splice_Site p.X773_splice 0.21 TCGA-BF-A5EO-01 2 74597349 74597349 G A DCTN1 Silent p.S417S 0.33 TCGA-BF-A5EO-01 2 87085537 87085537 G A CD8B Missense_Mutation p.L16F 0.34 deleterious(0.04) possibly_damaging(0.778) TCGA-BF-A5EO-01 2 89246860 89246860 C T IGKV1-5 Missense_Mutation p.D104N 0.30 deleterious(0) possibly_damaging(0.738) TCGA-BF-A5EO-01 2 97377495 97377495 T C LMAN2L Missense_Mutation p.I239V 0.26 tolerated(0.56) benign(0.421) TCGA-BF-A5EO-01 3 101062652 101062652 G A SENP7 Missense_Mutation p.P662S 0.29 tolerated(0.18) possibly_damaging(0.725) TCGA-BF-A5EO-01 3 10865003 10865003 C T SLC6A11 Silent p.F183F 0.24 TCGA-BF-A5EO-01 3 109046840 109046840 C T DPPA4 Missense_Mutation p.E304K 0.24 deleterious_low_confidence(0.04) benign(0.143) TCGA-BF-A5EO-01 3 111368615 111368615 G A CD96 Missense_Mutation p.E574K 0.26 deleterious(0) benign(0.11) TCGA-BF-A5EO-01 3 11301566 11301566 G A HRH1 Silent p.K281K 0.27 TCGA-BF-A5EO-01 3 113753855 113753855 C T KIAA1407 Silent p.E245E 0.25 TCGA-BF-A5EO-01 3 121137288 121137288 G A STXBP5L Missense_Mutation p.E1135K 0.19 deleterious(0) benign(0.14) TCGA-BF-A5EO-01 3 121341067 121341067 C T FBXO40 Missense_Mutation p.P264L 0.22 tolerated(0.25) benign(0.001) TCGA-BF-A5EO-01 3 121386971 121386971 G A GOLGB1 Missense_Mutation p.P3124L 0.22 probably_damaging(1) TCGA-BF-A5EO-01 3 121386972 121386972 G A GOLGB1 Missense_Mutation p.P3124S 0.22 probably_damaging(1) TCGA-BF-A5EO-01 3 12645692 12645692 G A RAF1 Silent p.S259S 0.31 TCGA-BF-A5EO-01 3 12645693 12645693 G A RAF1 Missense_Mutation p.S259F 0.30 deleterious(0) probably_damaging(0.977) TCGA-BF-A5EO-01 3 127379295 127379295 C T PODXL2 Missense_Mutation p.L142F 0.40 tolerated(0.23) benign(0.023) TCGA-BF-A5EO-01 3 129275238 129275238 G A PLXND1 Missense_Mutation p.R1899W 0.24 deleterious(0) possibly_damaging(0.677) TCGA-BF-A5EO-01 3 129275239 129275239 G A PLXND1 Silent p.A1898A 0.23 TCGA-BF-A5EO-01 3 133653491 133653491 G A SLCO2A1 3'UTR 0.36 TCGA-BF-A5EO-01 3 137822814 137822814 G A DZIP1L 5'UTR 0.33 TCGA-BF-A5EO-01 3 141011144 141011144 G A ACPL2 Silent p.L180L 0.35 TCGA-BF-A5EO-01 3 14171043 14171043 C T TMEM43 Silent p.Y48Y 0.20 TCGA-BF-A5EO-01 3 149470267 149470267 C T COMMD2 5'UTR 0.30 TCGA-BF-A5EO-01 3 149470268 149470268 C T COMMD2 5'UTR 0.30 TCGA-BF-A5EO-01 3 158384394 158384394 A G LXN 3'UTR 0.26 TCGA-BF-A5EO-01 3 168802779 168802779 G A MECOM Missense_Mutation p.S1090F 0.33 deleterious(0) unknown(0) TCGA-BF-A5EO-01 3 169639016 169639016 C T SAMD7 Missense_Mutation p.S34F 0.29 deleterious(0) benign(0.425) TCGA-BF-A5EO-01 3 170108836 170108836 T G SKIL Missense_Mutation p.L562V 0.23 tolerated(0.25) probably_damaging(0.997) TCGA-BF-A5EO-01 3 185234931 185234931 C T LIPH Nonsense_Mutation p.W302* 0.27 TCGA-BF-A5EO-01 3 186459352 186459352 A G KNG1 Silent p.R389R 0.29 TCGA-BF-A5EO-01 3 186953699 186953699 C T MASP1 Missense_Mutation p.E654K 0.24 deleterious(0.01) probably_damaging(0.91) TCGA-BF-A5EO-01 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.19 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EO-01 3 191000031 191000031 G A UTS2B 5'UTR 0.33 TCGA-BF-A5EO-01 3 19975471 19975471 C T EFHB Missense_Mutation p.D14N 0.58 deleterious_low_confidence(0.05) possibly_damaging(0.725) TCGA-BF-A5EO-01 3 27329228 27329228 G A NEK10 Missense_Mutation p.H584Y 0.24 deleterious(0) probably_damaging(0.964) TCGA-BF-A5EO-01 3 3067869 3067869 G A CNTN4 Missense_Mutation p.D524N 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 3 38748870 38748870 C T SCN10A Missense_Mutation p.G1429E 0.29 deleterious(0) benign(0.367) TCGA-BF-A5EO-01 3 39307858 39307858 C T CX3CR1 Missense_Mutation p.G80E 0.20 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 3 42956811 42956811 T C ZNF662 Missense_Mutation p.Y442H 0.36 deleterious(0.02) benign(0.006) TCGA-BF-A5EO-01 3 44684892 44684892 C T ZNF197 Missense_Mutation p.T757I 0.28 deleterious(0) probably_damaging(0.956) TCGA-BF-A5EO-01 3 44684893 44684893 C T ZNF197 Silent p.T757T 0.28 TCGA-BF-A5EO-01 3 46008129 46008129 G A FYCO1 Silent p.H899H 0.20 TCGA-BF-A5EO-01 3 48732560 48732560 G A IP6K2 Silent p.L55L 0.27 TCGA-BF-A5EO-01 3 49662686 49662686 C T BSN Missense_Mutation p.T168M 0.26 unknown(0) TCGA-BF-A5EO-01 3 49694582 49694582 C T BSN Silent p.L2531L 0.24 TCGA-BF-A5EO-01 3 50326781 50326781 G A IFRD2 Missense_Mutation p.R328W 0.27 deleterious(0.01) benign(0.032) TCGA-BF-A5EO-01 3 51669729 51669729 G A RAD54L2 Silent p.P421P 0.41 TCGA-BF-A5EO-01 3 5243454 5243454 C T EDEM1 Missense_Mutation p.L235F 0.21 deleterious(0) probably_damaging(0.993) TCGA-BF-A5EO-01 3 52847478 52847478 G A ITIH4 Missense_Mutation p.P918S 0.31 tolerated(1) benign(0.008) TCGA-BF-A5EO-01 3 53264572 53264572 G A TKT Silent p.I344I 0.35 TCGA-BF-A5EO-01 3 55108183 55108183 C T CACNA2D3 Nonsense_Mutation p.Q1076* 0.29 TCGA-BF-A5EO-01 3 58552169 58552169 G A FAM107A 3'UTR 0.29 TCGA-BF-A5EO-01 3 60522691 60522691 G A FHIT Missense_Mutation p.S2L 0.25 deleterious(0.02) benign(0.043) TCGA-BF-A5EO-01 3 62522197 62522197 A C CADPS Missense_Mutation p.F676V 0.09 tolerated(0.1) benign(0.307) TCGA-BF-A5EO-01 3 63976020 63976020 T G ATXN7 Missense_Mutation p.H510Q 0.33 tolerated(0.11) possibly_damaging(0.848) TCGA-BF-A5EO-01 3 69134278 69134278 G A ARL6IP5 Missense_Mutation p.R27K 0.23 tolerated(1) benign(0.001) TCGA-BF-A5EO-01 3 7188223 7188223 G A GRM7 Missense_Mutation p.D202N 0.28 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EO-01 3 7620304 7620304 G A GRM7 Missense_Mutation p.E571K 0.28 tolerated(0.48) benign(0.001) TCGA-BF-A5EO-01 3 89259241 89259241 G A EPHA3 Missense_Mutation p.D129N 0.20 tolerated(0.46) possibly_damaging(0.537) TCGA-BF-A5EO-01 3 97852346 97852346 G A OR5H1 Missense_Mutation p.D269N 0.27 tolerated(0.17) benign(0.026) TCGA-BF-A5EO-01 3 99513613 99513613 G A COL8A1 Missense_Mutation p.G290R 0.27 deleterious(0) unknown(0) TCGA-BF-A5EO-01 3 99513733 99513733 C T COL8A1 Missense_Mutation p.P330S 0.30 tolerated(0.18) unknown(0) TCGA-BF-A5EO-01 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.29 probably_damaging(1) TCGA-BF-A5EO-01 4 100530031 100530031 G A MTTP Missense_Mutation p.D556N 0.32 deleterious(0) possibly_damaging(0.58) TCGA-BF-A5EO-01 4 102981495 102981495 G T BANK1 Missense_Mutation p.E699D 0.27 tolerated(0.46) probably_damaging(0.99) TCGA-BF-A5EO-01 4 103188701 103188701 A T SLC39A8 Missense_Mutation p.N393K 0.35 deleterious(0.01) probably_damaging(0.909) TCGA-BF-A5EO-01 4 126328236 126328236 C A FAT4 Missense_Mutation p.H1837N 0.31 benign(0.175) TCGA-BF-A5EO-01 4 126411405 126411405 G A FAT4 Silent p.G4476G 0.31 TCGA-BF-A5EO-01 4 126411427 126411427 C T FAT4 Missense_Mutation p.P4484S 0.25 benign(0.004) TCGA-BF-A5EO-01 4 13603347 13603347 G A BOD1L1 Missense_Mutation p.T1726I 0.28 possibly_damaging(0.514) TCGA-BF-A5EO-01 4 142154923 142154923 C T ZNF330 Missense_Mutation p.S248F 0.31 tolerated(0.08) benign(0.008) TCGA-BF-A5EO-01 4 147561504 147561504 G A POU4F2 Silent p.L258L 0.25 TCGA-BF-A5EO-01 4 152679967 152679967 G A PET112 Missense_Mutation p.S95F 0.29 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 4 169815742 169815742 G A PALLD Missense_Mutation p.E705K 0.43 tolerated(0.08) probably_damaging(0.941) TCGA-BF-A5EO-01 4 170038842 170038842 C T SH3RF1 Missense_Mutation p.G537R 0.26 deleterious(0.01) possibly_damaging(0.456) TCGA-BF-A5EO-01 4 177608561 177608561 C T VEGFC Missense_Mutation p.E309K 0.31 tolerated(0.75) possibly_damaging(0.742) TCGA-BF-A5EO-01 4 1816000 1816000 G A LETM1 3'UTR 0.30 TCGA-BF-A5EO-01 4 184931766 184931766 C T STOX2 Missense_Mutation p.P592L 0.28 deleterious_low_confidence(0.02) benign(0.046) TCGA-BF-A5EO-01 4 187171498 187171498 C T KLKB1 Missense_Mutation p.H234Y 0.24 tolerated(0.11) probably_damaging(0.947) TCGA-BF-A5EO-01 4 3495020 3495020 G A DOK7 Missense_Mutation p.G436D 0.26 tolerated_low_confidence(0.66) possibly_damaging(0.581) TCGA-BF-A5EO-01 4 367156 367156 C T ZNF141 Silent p.P310P 0.24 TCGA-BF-A5EO-01 4 47938825 47938825 C T CNGA1 Silent p.T631T 0.27 TCGA-BF-A5EO-01 4 55953829 55953829 C T KDR Missense_Mutation p.E1203K 0.27 tolerated(0.07) benign(0.284) TCGA-BF-A5EO-01 4 69433547 69433547 A T UGT2B17 Missense_Mutation p.L219H 0.31 tolerated(0.08) possibly_damaging(0.654) TCGA-BF-A5EO-01 4 69693092 69693092 G A UGT2B10 Missense_Mutation p.G378D 0.25 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 4 70512846 70512846 A T UGT2A1 Missense_Mutation p.F173I 0.33 deleterious(0.03) probably_damaging(0.976) TCGA-BF-A5EO-01 4 71508044 71508044 G A ENAM Missense_Mutation p.G301R 0.29 deleterious(0.04) benign(0.206) TCGA-BF-A5EO-01 4 72634141 72634141 G A GC Silent p.V65V 0.16 TCGA-BF-A5EO-01 4 73164121 73164121 T C ADAMTS3 Silent p.T821T 0.31 TCGA-BF-A5EO-01 4 74282051 74282051 G A ALB Missense_Mutation p.E424K 0.24 deleterious(0.01) benign(0.414) TCGA-BF-A5EO-01 4 75147141 75147141 G A MTHFD2L Splice_Site p.X269_splice 0.28 TCGA-BF-A5EO-01 4 77283278 77283278 C T CCDC158 Splice_Site p.X674_splice 0.22 TCGA-BF-A5EO-01 4 7742015 7742015 C T SORCS2 3'UTR 0.29 TCGA-BF-A5EO-01 4 77662882 77662882 G A SHROOM3 Missense_Mutation p.G1186R 0.44 tolerated(0.19) possibly_damaging(0.483) TCGA-BF-A5EO-01 4 8601231 8601231 C T CPZ Intron 0.27 TCGA-BF-A5EO-01 4 8621373 8621373 G A CPZ 3'UTR 0.41 TCGA-BF-A5EO-01 4 94751101 94751101 T C ATOH1 Missense_Mutation p.S342P 0.25 deleterious(0) probably_damaging(0.979) TCGA-BF-A5EO-01 4 9987392 9987392 C T SLC2A9 Missense_Mutation p.G146R 0.19 tolerated(0.24) possibly_damaging(0.694) TCGA-BF-A5EO-01 5 102487043 102487043 C T PPIP5K2 Silent p.S331S 0.37 TCGA-BF-A5EO-01 5 1064010 1064010 C T SLC12A7 Silent p.Q896Q 0.32 TCGA-BF-A5EO-01 5 11117570 11117570 C T CTNND2 Missense_Mutation p.D757N 0.24 deleterious(0.05) possibly_damaging(0.681) TCGA-BF-A5EO-01 5 134910355 134910355 G A CXCL14 Missense_Mutation p.S76F 0.42 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-BF-A5EO-01 5 13717512 13717512 C T DNAH5 Nonsense_Mutation p.W4206* 0.31 TCGA-BF-A5EO-01 5 13919285 13919285 C T DNAH5 Silent p.K325K 0.24 TCGA-BF-A5EO-01 5 13931225 13931225 C T DNAH5 Silent p.G62G 0.32 TCGA-BF-A5EO-01 5 13931251 13931251 C T DNAH5 Missense_Mutation p.E54K 0.28 benign(0.418) TCGA-BF-A5EO-01 5 140174597 140174597 C T PCDHA2 Silent p.L16L 0.43 TCGA-BF-A5EO-01 5 140474497 140474497 G A PCDHB2 Silent p.T41T 0.43 TCGA-BF-A5EO-01 5 147474015 147474028 CAACAAATGTGCCC - SPINK5 Frame_Shift_Del p.N256Vfs*3 0.31 TCGA-BF-A5EO-01 5 149563178 149563178 C T CDX1 Missense_Mutation p.P245S 0.35 tolerated(1) benign(0.004) TCGA-BF-A5EO-01 5 149915417 149915417 C T NDST1 Silent p.Y469Y 0.38 TCGA-BF-A5EO-01 5 150484813 150484813 G A ANXA6 Missense_Mutation p.S611F 0.53 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 5 160753449 160753449 G A GABRB2 Nonsense_Mutation p.R373* 0.48 TCGA-BF-A5EO-01 5 168112776 168112776 G A SLIT3 Silent p.L1157L 0.36 TCGA-BF-A5EO-01 5 33576630 33576630 C T ADAMTS12 Silent p.E1167E 0.21 TCGA-BF-A5EO-01 5 35814581 35814581 C T SPEF2 Missense_Mutation p.L1799F 0.19 tolerated(0.23) benign(0.005) TCGA-BF-A5EO-01 5 35867558 35867558 C T IL7R Silent p.T124T 0.30 TCGA-BF-A5EO-01 5 35876596 35876596 G A IL7R 3'UTR 0.27 TCGA-BF-A5EO-01 5 40981585 40981585 G A C7 Silent p.T814T 0.33 TCGA-BF-A5EO-01 5 41203219 41203219 A C C6 Silent p.T38T 0.03 TCGA-BF-A5EO-01 5 76760597 76760597 A C WDR41 Missense_Mutation p.W69G 0.36 deleterious(0.04) probably_damaging(0.965) TCGA-BF-A5EO-01 5 89948347 89948347 G A GPR98 Missense_Mutation p.E1201K 0.64 possibly_damaging(0.636) TCGA-BF-A5EO-01 5 9154777 9154777 G A SEMA5A Missense_Mutation p.P435L 0.31 tolerated(0.06) possibly_damaging(0.794) TCGA-BF-A5EO-01 5 94275793 94275793 C T MCTP1 Missense_Mutation p.D390N 0.42 tolerated(0.06) possibly_damaging(0.889) TCGA-BF-A5EO-01 6 10913099 10913099 G A SYCP2L Splice_Site p.X338_splice 0.23 TCGA-BF-A5EO-01 6 111697297 111697297 C T REV3L Missense_Mutation p.R754K 0.21 tolerated_low_confidence(0.21) benign(0.002) TCGA-BF-A5EO-01 6 121769136 121769136 G A GJA1 Silent p.E381E 0.32 TCGA-BF-A5EO-01 6 128134969 128134969 G A THEMIS Missense_Mutation p.L273F 0.21 deleterious(0.01) possibly_damaging(0.795) TCGA-BF-A5EO-01 6 129905247 129905247 G A ARHGAP18 Missense_Mutation p.P575L 0.33 tolerated(0.06) probably_damaging(0.996) TCGA-BF-A5EO-01 6 130763088 130763088 G A TMEM200A 3'UTR 0.20 TCGA-BF-A5EO-01 6 131923439 131923439 G A MED23 Missense_Mutation p.P672S 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-BF-A5EO-01 6 133073771 133073771 G A VNN2 Missense_Mutation p.P219S 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 6 133802688 133802688 G A EYA4 Missense_Mutation p.G353E 0.21 deleterious(0) possibly_damaging(0.691) TCGA-BF-A5EO-01 6 134493445 134493445 T - SGK1 Frame_Shift_Del p.K319Nfs*7 0.15 TCGA-BF-A5EO-01 6 144262799 144262799 C T PLAGL1 Missense_Mutation p.G385D 0.27 deleterious(0.03) benign(0.314) TCGA-BF-A5EO-01 6 151672577 151672577 G A AKAP12 Silent p.E1017E 0.40 TCGA-BF-A5EO-01 6 152711560 152711560 C T SYNE1 Missense_Mutation p.E2678K 0.17 possibly_damaging(0.818) TCGA-BF-A5EO-01 6 15663088 15663088 G A DTNBP1 Missense_Mutation p.L5F 0.20 tolerated(1) possibly_damaging(0.726) TCGA-BF-A5EO-01 6 158923100 158923100 C T TULP4 Missense_Mutation p.A802V 0.21 tolerated_low_confidence(0.22) benign(0.001) TCGA-BF-A5EO-01 6 159181713 159181713 G A SYTL3 Silent p.E450E 0.16 TCGA-BF-A5EO-01 6 168314949 168314949 G A MLLT4 Silent p.L713L 0.15 TCGA-BF-A5EO-01 6 169622328 169622328 C T THBS2 Silent p.R1079R 0.38 TCGA-BF-A5EO-01 6 26285739 26285739 T - HIST1H4H 5'UTR 0.19 TCGA-BF-A5EO-01 6 27222873 27222873 G A PRSS16 Missense_Mutation p.R480K 0.26 tolerated(0.13) benign(0.004) TCGA-BF-A5EO-01 6 28268617 28268617 C T PGBD1 Missense_Mutation p.S329L 0.31 deleterious_low_confidence(0.03) benign(0.003) TCGA-BF-A5EO-01 6 28501855 28501855 A G GPX5 Missense_Mutation p.I193V 0.30 tolerated(1) benign(0) TCGA-BF-A5EO-01 6 28967277 28967277 G A ZNF311 Silent p.N99N 0.24 TCGA-BF-A5EO-01 6 30558470 30558470 C T ABCF1 Nonsense_Mutation p.R844* 0.29 TCGA-BF-A5EO-01 6 31107518 31107518 C T PSORS1C1 Missense_Mutation p.P90S 0.32 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-BF-A5EO-01 6 31583009 31583009 G A AIF1 5'UTR 0.29 TCGA-BF-A5EO-01 6 31597551 31597551 C T PRRC2A Missense_Mutation p.P728L 0.31 possibly_damaging(0.713) TCGA-BF-A5EO-01 6 31599519 31599519 C - PRRC2A Frame_Shift_Del p.R1024Gfs*186 0.24 TCGA-BF-A5EO-01 6 31922526 31922526 G A NELFE Missense_Mutation p.P183L 0.27 tolerated(0.1) possibly_damaging(0.713) TCGA-BF-A5EO-01 6 32065735 32065735 G A TNXB Missense_Mutation p.P81S 0.19 probably_damaging(0.986) TCGA-BF-A5EO-01 6 3224924 3224924 G A TUBB2B 3'UTR 0.34 TCGA-BF-A5EO-01 6 33132085 33132085 C A COL11A2 Nonsense_Mutation p.E1591* 0.18 TCGA-BF-A5EO-01 6 33132086 33132086 C T COL11A2 Silent p.P1590P 0.18 TCGA-BF-A5EO-01 6 33179671 33179671 G A RING1 Silent p.G337G 0.33 TCGA-BF-A5EO-01 6 350814 350814 C T DUSP22 Intron 0.17 TCGA-BF-A5EO-01 6 36275583 36275583 G A PNPLA1 3'UTR 0.20 TCGA-BF-A5EO-01 6 36839712 36839712 G A PPIL1 Intron 0.25 TCGA-BF-A5EO-01 6 38994419 38994419 G A DNAH8 Silent p.K4387K 0.32 TCGA-BF-A5EO-01 6 39159488 39159488 G A KCNK5 Silent p.F226F 0.29 TCGA-BF-A5EO-01 6 39282808 39282808 G A KCNK16 3'UTR 0.30 TCGA-BF-A5EO-01 6 39283020 39283020 G A KCNK16 Silent p.I283I 0.46 TCGA-BF-A5EO-01 6 43220597 43220597 G A TTBK1 Missense_Mutation p.E77K 0.23 probably_damaging(0.999) TCGA-BF-A5EO-01 6 43475327 43475327 C T LRRC73 Silent p.Q249Q 0.30 TCGA-BF-A5EO-01 6 44118009 44118009 C T TMEM63B Silent p.I523I 0.24 TCGA-BF-A5EO-01 6 47253736 47253736 G A TNFRSF21 Missense_Mutation p.P231L 0.17 tolerated(0.51) benign(0.001) TCGA-BF-A5EO-01 6 49753866 49753866 C T PGK2 Nonsense_Mutation p.W345* 0.23 TCGA-BF-A5EO-01 6 49806228 49806228 G A CRISP1 Missense_Mutation p.P182S 0.37 tolerated(0.12) benign(0.325) TCGA-BF-A5EO-01 6 52705626 52705626 G A GSTA5 5'UTR 0.25 TCGA-BF-A5EO-01 6 54254808 54254808 G A TINAG 3'UTR 0.26 TCGA-BF-A5EO-01 6 69728383 69728383 G A BAI3 Missense_Mutation p.G700E 0.36 tolerated(0.21) possibly_damaging(0.879) TCGA-BF-A5EO-01 6 70916904 70916904 C T COL19A1 Missense_Mutation p.P1119S 0.17 deleterious(0.05) possibly_damaging(0.873) TCGA-BF-A5EO-01 6 70916905 70916905 C T COL19A1 Missense_Mutation p.P1119L 0.17 deleterious(0) probably_damaging(0.94) TCGA-BF-A5EO-01 6 73904750 73904750 G A KCNQ5 Missense_Mutation p.M823I 0.40 tolerated_low_confidence(0.17) benign(0.003) TCGA-BF-A5EO-01 6 76715199 76715199 C T IMPG1 Missense_Mutation p.E314K 0.36 deleterious(0.04) possibly_damaging(0.544) TCGA-BF-A5EO-01 6 76744436 76744436 G A IMPG1 Nonsense_Mutation p.Q124* 0.25 TCGA-BF-A5EO-01 6 76751671 76751671 G A IMPG1 Silent p.V80V 0.25 TCGA-BF-A5EO-01 6 82937001 82937001 G A IBTK Missense_Mutation p.H188Y 0.28 deleterious(0) probably_damaging(0.956) TCGA-BF-A5EO-01 6 84634288 84634288 C T CYB5R4 Missense_Mutation p.S264L 0.24 deleterious(0.04) benign(0.005) TCGA-BF-A5EO-01 6 88853587 88853587 G A CNR1 Silent p.A469A 0.23 TCGA-BF-A5EO-01 6 97702552 97702552 G A MMS22L Nonsense_Mutation p.R334* 0.15 TCGA-BF-A5EO-01 6 97702553 97702553 G T MMS22L Missense_Mutation p.D333E 0.15 tolerated(0.74) benign(0.026) TCGA-BF-A5EO-01 7 100176341 100176341 A T LRCH4 Missense_Mutation p.F223I 0.24 deleterious(0) benign(0.111) TCGA-BF-A5EO-01 7 100551905 100551905 G A MUC3A Missense_Mutation p.G219E 0.13 tolerated(0.37) probably_damaging(0.972) TCGA-BF-A5EO-01 7 103019770 103019770 G A SLC26A5 Missense_Mutation p.P533S 0.21 tolerated(0.07) benign(0.02) TCGA-BF-A5EO-01 7 116414955 116414955 C T MET Nonsense_Mutation p.Q1035* 0.33 TCGA-BF-A5EO-01 7 117175322 117175322 C T CFTR Silent p.F200F 0.31 TCGA-BF-A5EO-01 7 123593679 123593679 G A SPAM1 Missense_Mutation p.G19R 0.18 tolerated(0.17) benign(0.067) TCGA-BF-A5EO-01 7 127014134 127014134 G A ZNF800 Missense_Mutation p.S419L 0.25 tolerated(0.25) benign(0.021) TCGA-BF-A5EO-01 7 127361428 127361428 C T SND1 Missense_Mutation p.P376S 0.22 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 7 128412543 128412543 T C CALU 3'Flank 0.29 TCGA-BF-A5EO-01 7 128489503 128489503 C T FLNC Silent p.L1690L 0.23 TCGA-BF-A5EO-01 7 128493804 128493804 C T FLNC Missense_Mutation p.R2133C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 7 130002784 130002784 C T CPA5 Silent p.I232I 0.16 TCGA-BF-A5EO-01 7 132174099 132174099 C T PLXNA4 Silent p.K441K 0.23 TCGA-BF-A5EO-01 7 139715526 139715526 C T TBXAS1 Silent p.F457F 0.31 TCGA-BF-A5EO-01 7 141618794 141618794 G A OR9A4 Missense_Mutation p.G40E 0.34 deleterious(0) probably_damaging(0.97) TCGA-BF-A5EO-01 7 141747609 141747609 C T MGAM Silent p.I841I 0.36 TCGA-BF-A5EO-01 7 142045529 142045529 G A TRBV4-2 Missense_Mutation p.M19I 0.19 tolerated(0.27) benign(0.007) TCGA-BF-A5EO-01 7 142569741 142569741 C T TRPV6 Missense_Mutation p.V633M 0.28 deleterious(0) possibly_damaging(0.863) TCGA-BF-A5EO-01 7 142750118 142750118 C T OR6V1 Silent p.P227P 0.31 TCGA-BF-A5EO-01 7 143421686 143421686 G A FAM115C Missense_Mutation p.A801T 0.31 deleterious(0.04) possibly_damaging(0.888) TCGA-BF-A5EO-01 7 143453536 143453536 C T CTAGE6 Missense_Mutation p.E406K 0.15 deleterious(0.01) possibly_damaging(0.828) TCGA-BF-A5EO-01 7 143657874 143657874 G A OR2F1 Missense_Mutation p.E271K 0.38 tolerated(0.08) possibly_damaging(0.861) TCGA-BF-A5EO-01 7 1478616 1478616 G T MICALL2 Missense_Mutation p.P661Q 0.23 tolerated(0.11) possibly_damaging(0.467) TCGA-BF-A5EO-01 7 149430690 149430690 C T KRBA1 Missense_Mutation p.P882S 0.40 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EO-01 7 151970886 151970886 A C KMT2C Missense_Mutation p.Y306D 0.08 probably_damaging(1) TCGA-BF-A5EO-01 7 154746077 154746077 G A PAXIP1 Silent p.L903L 0.46 TCGA-BF-A5EO-01 7 157903587 157903587 C T PTPRN2 Missense_Mutation p.G526E 0.50 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 7 18687412 18687412 C T HDAC9 Missense_Mutation p.S347L 0.19 tolerated(0.19) possibly_damaging(0.766) TCGA-BF-A5EO-01 7 21904191 21904191 G A DNAH11 Silent p.L3811L 0.52 TCGA-BF-A5EO-01 7 2279341 2279341 A G FTSJ2 Missense_Mutation p.Y4H 0.43 tolerated_low_confidence(0.5) benign(0.002) TCGA-BF-A5EO-01 7 30491342 30491342 G A NOD1 Missense_Mutation p.P564L 0.32 tolerated(0.08) benign(0.026) TCGA-BF-A5EO-01 7 33044939 33044939 G A FKBP9 Silent p.Q563Q 0.19 TCGA-BF-A5EO-01 7 33044940 33044940 G A FKBP9 Missense_Mutation p.E564K 0.20 tolerated(0.06) probably_damaging(0.989) TCGA-BF-A5EO-01 7 34182916 34182916 G A BMPER Missense_Mutation p.R607Q 0.40 deleterious(0.01) benign(0.22) TCGA-BF-A5EO-01 7 3990599 3990599 C T SDK1 Missense_Mutation p.P298S 0.38 deleterious(0) benign(0.063) TCGA-BF-A5EO-01 7 43484530 43484530 G A HECW1 Missense_Mutation p.E587K 0.27 tolerated_low_confidence(0.12) benign(0.184) TCGA-BF-A5EO-01 7 44104495 44104495 G A PGAM2 Silent p.A177A 0.31 TCGA-BF-A5EO-01 7 45753301 45753301 G A ADCY1 Missense_Mutation p.E1023K 0.28 deleterious(0.01) possibly_damaging(0.604) TCGA-BF-A5EO-01 7 48311436 48311436 C G ABCA13 Missense_Mutation p.L725V 0.42 benign(0.15) TCGA-BF-A5EO-01 7 48311437 48311437 T A ABCA13 Missense_Mutation p.L725H 0.46 benign(0.035) TCGA-BF-A5EO-01 7 48356756 48356756 C T ABCA13 Missense_Mutation p.P3288S 0.22 probably_damaging(0.997) TCGA-BF-A5EO-01 7 55220249 55220249 C T EGFR Silent p.I213I 0.28 TCGA-BF-A5EO-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.18 TCGA-BF-A5EO-01 7 57528777 57528777 C T ZNF716 Nonsense_Mutation p.Q204* 0.23 TCGA-BF-A5EO-01 7 6193646 6193646 C T USP42 Missense_Mutation p.P821S 0.21 tolerated(0.23) benign(0.037) TCGA-BF-A5EO-01 7 75167401 75167401 G A HIP1 3'UTR 0.33 TCGA-BF-A5EO-01 7 7546788 7546788 G A COL28A1 Missense_Mutation p.S311F 0.45 tolerated(0.6) possibly_damaging(0.526) TCGA-BF-A5EO-01 7 82545252 82545252 T A PCLO Missense_Mutation p.E4017V 0.31 unknown(0) TCGA-BF-A5EO-01 7 82764323 82764323 G A PCLO Missense_Mutation p.P848L 0.31 unknown(0) TCGA-BF-A5EO-01 7 86521124 86521124 G A KIAA1324L Silent p.I982I 0.33 TCGA-BF-A5EO-01 7 92732223 92732223 C T SAMD9 Missense_Mutation p.G1063E 0.26 tolerated(0.07) possibly_damaging(0.455) TCGA-BF-A5EO-01 7 97861254 97861254 G A TECPR1 Silent p.T612T 0.18 TCGA-BF-A5EO-01 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.27 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 7 99693441 99693441 G A MCM7 Silent p.L517L 0.24 TCGA-BF-A5EO-01 7 99798406 99798406 C T STAG3 Silent p.F625F 0.19 TCGA-BF-A5EO-01 8 100128082 100128082 A G VPS13B Missense_Mutation p.D306G 0.34 deleterious(0.01) benign(0.009) TCGA-BF-A5EO-01 8 120255734 120255734 C T MAL2 3'UTR 0.38 TCGA-BF-A5EO-01 8 126448717 126448717 C T TRIB1 3'UTR 0.21 TCGA-BF-A5EO-01 8 131861869 131861869 G A ADCY8 Silent p.F797F 0.34 TCGA-BF-A5EO-01 8 134239753 134239753 G A WISP1 Missense_Mutation p.G302R 0.20 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 8 135614484 135614484 G A ZFAT Missense_Mutation p.S493F 0.30 deleterious(0) probably_damaging(0.991) TCGA-BF-A5EO-01 8 139209816 139209816 G A FAM135B Missense_Mutation p.R256C 0.31 tolerated(0.07) benign(0.075) TCGA-BF-A5EO-01 8 139209817 139209817 G A FAM135B Silent p.L255L 0.30 TCGA-BF-A5EO-01 8 140630489 140630489 C T KCNK9 3'UTR 0.25 TCGA-BF-A5EO-01 8 141321450 141321450 G A TRAPPC9 Silent p.L605L 0.28 TCGA-BF-A5EO-01 8 142367541 142367541 G A GPR20 Silent p.C161C 0.45 TCGA-BF-A5EO-01 8 144803263 144803263 C T MAPK15 Silent p.S337S 0.33 TCGA-BF-A5EO-01 8 144942720 144942720 C T EPPK1 Missense_Mutation p.E1568K 0.23 probably_damaging(0.999) TCGA-BF-A5EO-01 8 144945117 144945117 C T EPPK1 Missense_Mutation p.D769N 0.29 probably_damaging(0.999) TCGA-BF-A5EO-01 8 145616618 145616618 C T ADCK5 Silent p.L248L 0.46 TCGA-BF-A5EO-01 8 145748789 145748789 G C LRRC24 Missense_Mutation p.N204K 0.22 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EO-01 8 145772531 145772531 G A ARHGAP39 Missense_Mutation p.P647S 0.37 deleterious(0.02) probably_damaging(1) TCGA-BF-A5EO-01 8 163591 163591 G C RPL23AP53 RNA 0.23 TCGA-BF-A5EO-01 8 24253276 24253276 C T ADAMDEC1 Missense_Mutation p.S136F 0.32 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 8 26221300 26221300 C T PPP2R2A Missense_Mutation p.S299L 0.29 deleterious(0) probably_damaging(0.944) TCGA-BF-A5EO-01 8 30210833 30210833 G A TUBBP1 RNA 0.24 TCGA-BF-A5EO-01 8 30924654 30924654 C T WRN Missense_Mutation p.P204S 0.28 deleterious(0.03) possibly_damaging(0.471) TCGA-BF-A5EO-01 8 3443716 3443716 G A CSMD1 Silent p.T388T 0.25 TCGA-BF-A5EO-01 8 36641948 36641948 G A KCNU1 Missense_Mutation p.R7Q 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-BF-A5EO-01 8 39613318 39613318 C T ADAM2 Missense_Mutation p.E576K 0.29 deleterious(0.02) benign(0.091) TCGA-BF-A5EO-01 8 53038684 53038684 G A ST18 Missense_Mutation p.L895F 0.28 tolerated(0.15) probably_damaging(0.986) TCGA-BF-A5EO-01 8 57353734 57353734 G A PENK 3'UTR 0.29 TCGA-BF-A5EO-01 8 62289219 62289219 G A CLVS1 Missense_Mutation p.E171K 0.23 deleterious(0) possibly_damaging(0.845) TCGA-BF-A5EO-01 8 62588784 62588784 G A ASPH Intron 0.15 TCGA-BF-A5EO-01 8 6874235 6874235 G A DEFA3 Silent p.S46S 0.09 TCGA-BF-A5EO-01 8 73848500 73848500 C T KCNB2 Nonsense_Mutation p.R304* 0.26 TCGA-BF-A5EO-01 8 77690583 77690583 G A ZFHX4 Missense_Mutation p.R1078Q 0.18 benign(0.417) TCGA-BF-A5EO-01 8 85686859 85686859 G A RALYL Missense_Mutation p.G114E 0.16 deleterious(0.03) probably_damaging(0.981) TCGA-BF-A5EO-01 9 104499933 104499933 G A GRIN3A Missense_Mutation p.S110F 0.43 deleterious_low_confidence(0.01) benign(0.061) TCGA-BF-A5EO-01 9 107361529 107361529 G A OR13C5 Missense_Mutation p.H56Y 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-BF-A5EO-01 9 107379675 107379675 C T OR13C9 Missense_Mutation p.D271N 0.25 tolerated(0.07) benign(0.024) TCGA-BF-A5EO-01 9 113637807 113637807 C T LPAR1 Missense_Mutation p.R330H 0.30 tolerated(0.11) possibly_damaging(0.818) TCGA-BF-A5EO-01 9 117165012 117165012 G A DFNB31 3'UTR 0.26 TCGA-BF-A5EO-01 9 119625972 119625972 C T ASTN2 Missense_Mutation p.D593N 0.22 tolerated(0.1) unknown(0) TCGA-BF-A5EO-01 9 121929721 121929721 G A BRINP1 Missense_Mutation p.P643S 0.31 tolerated(0.08) probably_damaging(0.968) TCGA-BF-A5EO-01 9 123912687 123912687 C A CNTRL Missense_Mutation p.P1297T 0.33 possibly_damaging(0.756) TCGA-BF-A5EO-01 9 125316190 125316190 C T OR1N2 Missense_Mutation p.P248S 0.19 tolerated(0.19) benign(0.012) TCGA-BF-A5EO-01 9 125486937 125486937 C T OR1L4 Silent p.I223I 0.13 TCGA-BF-A5EO-01 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.26 deleterious(0) probably_damaging(1) TCGA-BF-A5EO-01 9 128103504 128103504 C T GAPVD1 Missense_Mutation p.P1003S 0.29 tolerated(0.27) probably_damaging(0.999) TCGA-BF-A5EO-01 9 130569274 130569274 C T FPGS Missense_Mutation p.R137W 0.28 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EO-01 9 130649036 130649036 G A ST6GALNAC6 Missense_Mutation p.H282Y 0.20 probably_damaging(0.954) TCGA-BF-A5EO-01 9 130883526 130883526 C T PTGES2 Missense_Mutation p.M344I 0.22 tolerated(0.55) possibly_damaging(0.496) TCGA-BF-A5EO-01 9 131095783 131095783 C T COQ4 Silent p.I219I 0.25 TCGA-BF-A5EO-01 9 133543638 133543638 G A PRDM12 Missense_Mutation p.E170K 0.27 tolerated(0.11) possibly_damaging(0.571) TCGA-BF-A5EO-01 9 135906370 135906370 C T GTF3C5 5'Flank 0.29 TCGA-BF-A5EO-01 9 136131709 136131709 C T RP11-430N14.4 5'Flank 0.27 TCGA-BF-A5EO-01 9 137582755 137582755 C T COL5A1 Intron 0.30 TCGA-BF-A5EO-01 9 139563056 139563056 C T EGFL7 Missense_Mutation p.S43L 0.32 deleterious(0) possibly_damaging(0.836) TCGA-BF-A5EO-01 9 139945747 139945747 G A ENTPD2 Silent p.F154F 0.26 TCGA-BF-A5EO-01 9 140881291 140881291 C T CACNA1B Silent p.I653I 0.26 TCGA-BF-A5EO-01 9 27949128 27949128 G A LINGO2 Silent p.T514T 0.38 TCGA-BF-A5EO-01 9 33073614 33073614 G A SMU1 Missense_Mutation p.L73F 0.36 deleterious(0) probably_damaging(0.973) TCGA-BF-A5EO-01 9 82321712 82321712 C T TLE4 Silent p.G278G 0.37 TCGA-BF-A5EO-01 9 8484167 8484167 C T PTPRD Missense_Mutation p.G1122D 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-BF-A5EO-01 9 96320195 96320195 C T FAM120A Silent p.F857F 0.47 TCGA-BF-A5EO-01 X 105450578 105450578 T C MUM1L1 Missense_Mutation p.Y385H 0.61 tolerated(0.17) probably_damaging(0.999) TCGA-BF-A5EO-01 X 108695270 108695270 C T GUCY2F Missense_Mutation p.G485E 0.55 deleterious(0.04) possibly_damaging(0.652) TCGA-BF-A5EO-01 X 117707926 117707926 C T DOCK11 Missense_Mutation p.S445L 0.49 tolerated(0.24) benign(0.036) TCGA-BF-A5EO-01 X 130419236 130419236 C T IGSF1 Missense_Mutation p.G195E 0.56 deleterious(0.02) probably_damaging(1) TCGA-BF-A5EO-01 X 1317422 1317422 G A CRLF2 Missense_Mutation p.R215W 0.27 deleterious(0) probably_damaging(0.985) TCGA-BF-A5EO-01 X 142967191 142967191 A C UBE2NL 5'UTR 0.07 TCGA-BF-A5EO-01 X 144337463 144337463 G A SPANXN1 3'UTR 0.62 TCGA-BF-A5EO-01 X 153131188 153131188 G A L1CAM Nonsense_Mutation p.Q840* 0.56 TCGA-BF-A5EO-01 X 32536026 32536026 C T DMD Intron 0.73 TCGA-BF-A5EO-01 X 36163024 36163024 C T CHDC2 3'UTR 0.56 TCGA-BF-A5EO-01 X 40588573 40588573 T C MED14 Silent p.E80E 0.14 TCGA-BF-A5EO-01 X 50341362 50341362 C T SHROOM4 Silent p.L1372L 0.44 TCGA-BF-A5EO-01 X 83128002 83128002 G A CYLC1 Missense_Mutation p.E96K 0.54 tolerated(0.68) benign(0.031) TCGA-BF-A5EO-01 Y 16942353 16942353 C T NLGN4Y Missense_Mutation p.L519F 0.53 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EP-01 10 101148006 101148006 G A CNNM1 Silent p.E874E 0.11 TCGA-BF-A5EP-01 10 104140982 104140982 C T GBF1 Missense_Mutation p.P1757S 0.73 tolerated_low_confidence(0.56) benign(0) TCGA-BF-A5EP-01 10 124457349 124457349 G A C10orf120 Missense_Mutation p.S303L 0.76 deleterious(0) probably_damaging(0.975) TCGA-BF-A5EP-01 10 17088080 17088080 C T CUBN Missense_Mutation p.E1115K 0.86 deleterious(0.01) probably_damaging(0.991) TCGA-BF-A5EP-01 10 18331671 18331671 G A SLC39A12 Nonsense_Mutation p.W662* 0.71 TCGA-BF-A5EP-01 10 89692838 89692838 C T PTEN Missense_Mutation p.L108F 0.68 deleterious(0.01) possibly_damaging(0.889) TCGA-BF-A5EP-01 11 103814213 103814213 G A PDGFD Nonsense_Mutation p.R247* 0.77 TCGA-BF-A5EP-01 11 108382693 108382693 G A EXPH5 Nonsense_Mutation p.Q1181* 0.73 TCGA-BF-A5EP-01 11 118104192 118104192 G A MPZL3 Missense_Mutation p.R222C 0.81 tolerated(0.1) benign(0.002) TCGA-BF-A5EP-01 11 1213553 1213553 C A MUC5AC RNA 0.20 TCGA-BF-A5EP-01 11 123900476 123900476 G A OR10G8 Silent p.V49V 0.72 TCGA-BF-A5EP-01 11 124440316 124440316 C T OR8A1 Missense_Mutation p.L118F 0.75 tolerated(0.07) benign(0.242) TCGA-BF-A5EP-01 11 17167260 17167260 G A PIK3C2A Silent p.L553L 0.41 TCGA-BF-A5EP-01 11 2154418 2154418 G T IGF2 Missense_Mutation p.F170L 0.44 tolerated(0.19) probably_damaging(0.989) TCGA-BF-A5EP-01 11 46408012 46408012 C T CHRM4 Missense_Mutation p.M32I 0.33 tolerated(0.18) benign(0.004) TCGA-BF-A5EP-01 11 4661848 4661848 G C OR51D1 Missense_Mutation p.R276S 0.41 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EP-01 11 4869653 4869653 C T OR51S1 Missense_Mutation p.M262I 0.32 tolerated(0.06) probably_damaging(0.989) TCGA-BF-A5EP-01 11 5528769 5528769 G A UBQLN3 3'UTR 0.27 TCGA-BF-A5EP-01 11 60230489 60230489 G A MS4A1 Missense_Mutation p.M58I 0.76 tolerated(0.12) probably_damaging(0.998) TCGA-BF-A5EP-01 11 6232955 6232955 A C FAM160A2 Silent p.A914A 0.43 TCGA-BF-A5EP-01 11 72396572 72396572 G A ARAP1 3'UTR 0.46 TCGA-BF-A5EP-01 11 7690490 7690490 C G CYB5R2 Missense_Mutation p.G112R 0.43 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 11 883176 883176 C T CHID1 Missense_Mutation p.D336N 0.50 tolerated(0.52) benign(0.004) TCGA-BF-A5EP-01 11 88924449 88924449 A C TYR Missense_Mutation p.N300T 0.71 deleterious(0) possibly_damaging(0.825) TCGA-BF-A5EP-01 11 94731548 94731548 C T KDM4D Missense_Mutation p.R338C 0.62 tolerated(0.11) benign(0.007) TCGA-BF-A5EP-01 12 18234164 18234164 C T RERGL Silent p.L193L 0.37 TCGA-BF-A5EP-01 12 21919504 21919504 A C KCNJ8 Missense_Mutation p.F143C 0.37 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EP-01 12 25263064 25263064 A G CASC1 Silent p.F630F 0.56 TCGA-BF-A5EP-01 12 51318911 51318911 G A METTL7A Nonsense_Mutation p.W30* 0.72 TCGA-BF-A5EP-01 12 75874744 75874744 C T GLIPR1 Silent p.I28I 0.44 TCGA-BF-A5EP-01 12 99548192 99548192 G A ANKS1B Intron 0.30 TCGA-BF-A5EP-01 13 32826012 32826012 C T FRY Intron 0.68 TCGA-BF-A5EP-01 13 53603158 53603158 G A OLFM4 Missense_Mutation p.G63R 0.74 tolerated(0.37) unknown(0) TCGA-BF-A5EP-01 13 78318483 78318483 G A SLAIN1 Missense_Mutation p.E114K 0.70 deleterious(0) unknown(0) TCGA-BF-A5EP-01 14 106208038 106208038 G A IGHG1 Silent p.F255F 0.39 TCGA-BF-A5EP-01 14 20943187 20943187 C T PNP Intron 0.40 TCGA-BF-A5EP-01 14 25101304 25101304 C T GZMB Silent p.R120R 0.36 TCGA-BF-A5EP-01 14 38295414 38295414 C T TTC6 Silent p.F1663F 0.42 TCGA-BF-A5EP-01 14 47530677 47530677 G A MDGA2 Missense_Mutation p.P434S 0.52 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 14 50244647 50244647 C T KLHDC2 Missense_Mutation p.L148F 0.47 tolerated(0.06) probably_damaging(0.997) TCGA-BF-A5EP-01 15 45713413 45713413 C T SPATA5L1 3'UTR 0.64 TCGA-BF-A5EP-01 15 76496454 76496454 G A C15orf27 Missense_Mutation p.R465Q 0.37 tolerated_low_confidence(0.45) benign(0.003) TCGA-BF-A5EP-01 15 76496455 76496455 G A C15orf27 Silent p.R465R 0.36 TCGA-BF-A5EP-01 15 85488081 85488081 C T SLC28A1 Silent p.C619C 0.36 TCGA-BF-A5EP-01 16 1537585 1537585 G A PTX4 Silent p.P171P 0.47 TCGA-BF-A5EP-01 16 2048254 2048254 G A ZNF598 Silent p.A898A 0.36 TCGA-BF-A5EP-01 16 2048255 2048255 G A ZNF598 Missense_Mutation p.A898V 0.36 probably_damaging(0.999) TCGA-BF-A5EP-01 16 2903184 2903184 G A PRSS22 Silent p.I288I 0.42 TCGA-BF-A5EP-01 16 30762550 30762550 C T PHKG2 Silent p.A73A 0.40 TCGA-BF-A5EP-01 16 30997501 30997501 A G HSD3B7 Missense_Mutation p.T100A 0.42 tolerated(0.89) benign(0.012) TCGA-BF-A5EP-01 16 48220888 48220888 C T ABCC11 Missense_Mutation p.G1016E 0.43 tolerated(0.12) benign(0.208) TCGA-BF-A5EP-01 16 54966623 54966623 A G IRX5 Missense_Mutation p.M155V 0.42 deleterious(0) possibly_damaging(0.825) TCGA-BF-A5EP-01 16 70721869 70721869 C T VAC14 Missense_Mutation p.G771R 0.36 tolerated(0.2) possibly_damaging(0.461) TCGA-BF-A5EP-01 16 70989393 70989393 G A HYDIN Silent p.I2067I 0.37 TCGA-BF-A5EP-01 16 72992790 72992790 G A ZFHX3 Missense_Mutation p.P419S 0.35 probably_damaging(0.968) TCGA-BF-A5EP-01 16 84256623 84256623 C T KCNG4 Missense_Mutation p.E254K 0.11 tolerated(0.07) probably_damaging(0.99) TCGA-BF-A5EP-01 17 29326025 29326025 G A RNF135 Missense_Mutation p.R372K 0.77 tolerated(0.3) benign(0.044) TCGA-BF-A5EP-01 17 33772553 33772553 G A SLFN13 Silent p.A49A 0.12 TCGA-BF-A5EP-01 17 34432694 34432694 G A CCL4 Missense_Mutation p.E90K 0.73 tolerated(0.06) benign(0.215) TCGA-BF-A5EP-01 17 38925171 38925171 C T KRT26 Missense_Mutation p.E383K 0.59 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 17 39768479 39768479 C T KRT16 Silent p.Q154Q 0.43 TCGA-BF-A5EP-01 17 48649267 48649267 G A CACNA1G Silent p.L205L 0.40 TCGA-BF-A5EP-01 17 50149720 50149720 C T CA10 Nonsense_Mutation p.W32* 0.36 TCGA-BF-A5EP-01 17 56598352 56598352 G A SEPT4 Intron 0.37 TCGA-BF-A5EP-01 17 60813261 60813261 G A MARCH10 Intron 0.46 TCGA-BF-A5EP-01 17 60813798 60813798 C T MARCH10 Missense_Mutation p.M477I 0.40 tolerated(0.6) benign(0.019) TCGA-BF-A5EP-01 17 62049952 62049952 C T SCN4A Missense_Mutation p.D84N 0.26 deleterious(0) probably_damaging(0.957) TCGA-BF-A5EP-01 17 62135243 62135243 G A ERN1 Silent p.S439S 0.47 TCGA-BF-A5EP-01 17 73485731 73485731 C T KIAA0195 Silent p.L314L 0.45 TCGA-BF-A5EP-01 17 74136327 74136327 G A FOXJ1 Silent p.P50P 0.48 TCGA-BF-A5EP-01 17 77808797 77808797 G A CBX4 Missense_Mutation p.A215V 0.42 tolerated(0.05) benign(0.001) TCGA-BF-A5EP-01 17 79429006 79429006 C T RP11-1055B8.7 Silent p.N2439N 0.37 TCGA-BF-A5EP-01 17 8135696 8135696 G A CTC1 Silent p.I681I 0.72 TCGA-BF-A5EP-01 18 28714020 28714020 G T DSC1 Missense_Mutation p.D650E 0.39 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EP-01 18 28714022 28714022 C T DSC1 Missense_Mutation p.D650N 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-BF-A5EP-01 18 3814269 3814269 G A DLGAP1 Missense_Mutation p.P321L 0.40 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 18 46858364 46858364 G A DYM Silent p.T211T 0.37 TCGA-BF-A5EP-01 18 50985695 50985695 G A DCC Missense_Mutation p.M1162I 0.33 deleterious(0.01) benign(0.309) TCGA-BF-A5EP-01 19 14591238 14591238 G A GIPC1 Silent p.I178I 0.75 TCGA-BF-A5EP-01 19 15288467 15288467 G A NOTCH3 Silent p.P1424P 0.78 TCGA-BF-A5EP-01 19 17534839 17534839 T C MVB12A Missense_Mutation p.L222P 0.76 deleterious(0) probably_damaging(0.985) TCGA-BF-A5EP-01 19 38942477 38942477 C T RYR1 Missense_Mutation p.A399V 0.51 probably_damaging(0.954) TCGA-BF-A5EP-01 19 38942478 38942478 C T RYR1 Silent p.A399A 0.51 TCGA-BF-A5EP-01 19 48967516 48967516 C T KCNJ14 Missense_Mutation p.R265C 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A5EP-01 19 50886013 50886013 G A NR1H2 3'UTR 0.40 TCGA-BF-A5EP-01 19 51585862 51585862 G A KLK14 Silent p.L20L 0.45 TCGA-BF-A5EP-01 19 51585863 51585863 G A KLK14 Silent p.L19L 0.44 TCGA-BF-A5EP-01 19 51918155 51918155 A G SIGLEC10 Missense_Mutation p.L513P 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-BF-A5EP-01 19 55086976 55086976 C A LILRA2 Silent p.S303S 0.40 TCGA-BF-A5EP-01 19 55222163 55222163 C T AC098784.2 3'Flank 0.30 TCGA-BF-A5EP-01 19 5844183 5844183 C T FUT3 Missense_Mutation p.G223E 0.73 deleterious(0) probably_damaging(1) TCGA-BF-A5EP-01 19 9049622 9049622 A G MUC16 Missense_Mutation p.L10670P 0.74 possibly_damaging(0.506) TCGA-BF-A5EP-01 19 9066060 9066060 A C MUC16 Missense_Mutation p.L7129R 0.75 unknown(0) TCGA-BF-A5EP-01 1 12726438 12726438 C T AADACL4 Missense_Mutation p.P306S 0.39 tolerated(0.08) possibly_damaging(0.734) TCGA-BF-A5EP-01 1 13940856 13940856 C T PDPN Silent p.F220F 0.42 TCGA-BF-A5EP-01 1 152188085 152188085 C T HRNR Missense_Mutation p.G2007E 0.19 unknown(0) TCGA-BF-A5EP-01 1 153283148 153283148 C T PGLYRP3 5'UTR 0.57 TCGA-BF-A5EP-01 1 158655007 158655007 G A SPTA1 Missense_Mutation p.S52F 0.28 deleterious(0) probably_damaging(0.985) TCGA-BF-A5EP-01 1 160783508 160783508 C T LY9 Silent p.S179S 0.48 TCGA-BF-A5EP-01 1 175293620 175293620 A T TNR Missense_Mutation p.S1277T 0.25 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EP-01 1 176525994 176525994 C T PAPPA2 Missense_Mutation p.T179I 0.45 tolerated_low_confidence(0.4) benign(0.023) TCGA-BF-A5EP-01 1 182908438 182908438 G A SHCBP1L Missense_Mutation p.L317F 0.23 tolerated(0.84) probably_damaging(0.999) TCGA-BF-A5EP-01 1 205779437 205779437 C A SLC41A1 Missense_Mutation p.A45S 0.21 tolerated(0.49) benign(0.001) TCGA-BF-A5EP-01 1 21048296 21048296 C T SH2D5 Missense_Mutation p.G421S 0.32 deleterious_low_confidence(0.05) probably_damaging(1) TCGA-BF-A5EP-01 1 222794514 222794514 C T MIA3 Silent p.R49R 0.40 TCGA-BF-A5EP-01 1 228492186 228492186 C T OBSCN Missense_Mutation p.R4729C 0.45 benign(0.109) TCGA-BF-A5EP-01 1 248436778 248436778 T G OR2T33 Missense_Mutation p.L113F 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 1 43200882 43200882 G A CLDN19 Intron 0.21 TCGA-BF-A5EP-01 1 43885575 43885575 C T SZT2 Silent p.F350F 0.37 TCGA-BF-A5EP-01 1 45960755 45960755 G A CCDC163P 3'Flank 0.46 TCGA-BF-A5EP-01 1 50659567 50659567 G A ELAVL4 Missense_Mutation p.R179Q 0.42 deleterious(0) probably_damaging(0.968) TCGA-BF-A5EP-01 1 60392370 60392370 G A CYP2J2 Missense_Mutation p.H17Y 0.28 tolerated(0.17) possibly_damaging(0.635) TCGA-BF-A5EP-01 1 60392371 60392371 G A CYP2J2 Silent p.V16V 0.28 TCGA-BF-A5EP-01 1 82436054 82436054 T G LPHN2 Silent p.A913A 0.71 TCGA-BF-A5EP-01 1 82436055 82436055 T C LPHN2 Missense_Mutation p.W914R 0.70 deleterious(0.01) possibly_damaging(0.888) TCGA-BF-A5EP-01 20 1356212 1356212 G A FKBP1A Missense_Mutation p.R41W 0.90 deleterious(0.03) benign(0.143) TCGA-BF-A5EP-01 20 1356213 1356213 G A FKBP1A Silent p.S40S 0.86 TCGA-BF-A5EP-01 20 34089744 34089744 C T CEP250 Missense_Mutation p.S1324F 0.37 probably_damaging(0.952) TCGA-BF-A5EP-01 20 46256484 46256484 G A NCOA3 Missense_Mutation p.E238K 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-BF-A5EP-01 20 50408878 50408878 G A SALL4 Silent p.N48N 0.37 TCGA-BF-A5EP-01 20 51872939 51872939 C T TSHZ2 Missense_Mutation p.P981L 0.36 tolerated(0.63) probably_damaging(0.96) TCGA-BF-A5EP-01 20 6759215 6759215 C A BMP2 Missense_Mutation p.H224N 0.49 deleterious(0.01) benign(0.138) TCGA-BF-A5EP-01 22 19163956 19163956 G C SLC25A1 Missense_Mutation p.L267V 0.05 tolerated(0.19) benign(0.038) TCGA-BF-A5EP-01 22 22869584 22869584 C T ZNF280A Missense_Mutation p.G124D 0.24 tolerated(1) benign(0.004) TCGA-BF-A5EP-01 22 24480663 24480663 C T CABIN1 Silent p.T1014T 0.26 TCGA-BF-A5EP-01 22 26692916 26692916 C T SEZ6L Silent p.T344T 0.18 TCGA-BF-A5EP-01 22 37333904 37333904 G A CSF2RB Missense_Mutation p.G685E 0.51 tolerated(0.82) benign(0.013) TCGA-BF-A5EP-01 22 39441509 39441509 T C APOBEC3F Silent p.N176N 0.32 TCGA-BF-A5EP-01 22 45281376 45281376 C T PHF21B Missense_Mutation p.R436Q 0.79 deleterious(0.02) possibly_damaging(0.714) TCGA-BF-A5EP-01 22 50882654 50882654 C A PPP6R2 Missense_Mutation p.A927D 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-A5EP-01 2 102505276 102505276 A T MAP4K4 Missense_Mutation p.Q1172L 0.50 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BF-A5EP-01 2 121747275 121747275 C T GLI2 Missense_Mutation p.A1262V 0.28 tolerated_low_confidence(0.17) benign(0.001) TCGA-BF-A5EP-01 2 128178923 128178923 C T PROC Silent p.S45S 0.31 TCGA-BF-A5EP-01 2 131459994 131459994 A C FAR2P3 RNA 0.36 TCGA-BF-A5EP-01 2 169789040 169789040 C T ABCB11 Silent p.V1020V 0.31 TCGA-BF-A5EP-01 2 173659879 173659879 G C RAPGEF4 Silent p.L64L 0.06 TCGA-BF-A5EP-01 2 179453655 179453655 C T TTN Missense_Mutation p.E20933K 0.37 TCGA-BF-A5EP-01 2 183094807 183094807 G A PDE1A Missense_Mutation p.P217S 0.39 deleterious(0) probably_damaging(0.955) TCGA-BF-A5EP-01 2 20838313 20838313 A C HS1BP3 Missense_Mutation p.F169C 0.48 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EP-01 2 219093493 219093493 C T ARPC2 Missense_Mutation p.P48S 0.39 deleterious(0) benign(0.416) TCGA-BF-A5EP-01 2 239147613 239147613 G A HES6 Missense_Mutation p.P177L 0.23 deleterious(0.02) benign(0.007) TCGA-BF-A5EP-01 2 239147614 239147614 G A HES6 Missense_Mutation p.P177S 0.24 tolerated(0.93) benign(0.004) TCGA-BF-A5EP-01 2 48956355 48956356 TG - LHCGR Frame_Shift_Del p.Q82Dfs*2 0.11 TCGA-BF-A5EP-01 2 49381424 49381424 G A FSHR Missense_Mutation p.P45S 0.43 deleterious(0.05) benign(0.005) TCGA-BF-A5EP-01 2 54483276 54483276 C T TSPYL6 Missense_Mutation p.E5K 0.31 tolerated(0.39) benign(0.057) TCGA-BF-A5EP-01 2 74274831 74274831 C T TET3 Missense_Mutation p.A461V 0.38 tolerated(0.27) benign(0.003) TCGA-BF-A5EP-01 2 74274832 74274832 C T TET3 Silent p.A461A 0.37 TCGA-BF-A5EP-01 2 99999343 99999343 C T EIF5B Missense_Mutation p.L744F 0.41 probably_damaging(1) TCGA-BF-A5EP-01 3 13669433 13669433 G A FBLN2 Missense_Mutation p.D845N 0.72 tolerated(0.43) benign(0.131) TCGA-BF-A5EP-01 3 138724786 138724786 C T PRR23A Missense_Mutation p.D109N 0.74 tolerated(0.1) probably_damaging(0.98) TCGA-BF-A5EP-01 3 160155992 160155992 A T TRIM59 Nonsense_Mutation p.L327* 0.43 TCGA-BF-A5EP-01 3 52027718 52027718 G A RPL29 3'UTR 0.67 TCGA-BF-A5EP-01 3 64132850 64132850 G A PRICKLE2 Missense_Mutation p.P439L 0.75 tolerated(0.17) benign(0.118) TCGA-BF-A5EP-01 4 113565994 113565994 C T LARP7 Missense_Mutation p.L64F 0.40 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EP-01 4 20547710 20547710 A T SLIT2 Missense_Mutation p.H778L 0.65 tolerated(0.09) benign(0.094) TCGA-BF-A5EP-01 4 71255650 71255650 C T SMR3B 3'UTR 0.22 TCGA-BF-A5EP-01 4 90035287 90035287 C G TIGD2 Missense_Mutation p.L388V 0.05 deleterious(0.04) benign(0.271) TCGA-BF-A5EP-01 5 101834533 101834533 C T SLCO6A1 Missense_Mutation p.A6T 0.70 tolerated_low_confidence(0.1) benign(0.078) TCGA-BF-A5EP-01 5 129001248 129001248 G A ADAMTS19 Missense_Mutation p.E822K 0.76 tolerated(0.15) possibly_damaging(0.855) TCGA-BF-A5EP-01 5 135692935 135692935 G A TRPC7 Silent p.F47F 0.68 TCGA-BF-A5EP-01 5 141336006 141336006 C T PCDH12 Missense_Mutation p.E471K 0.73 deleterious(0) probably_damaging(1) TCGA-BF-A5EP-01 5 170883572 170883572 C A FGF18 Missense_Mutation p.F129L 0.69 deleterious(0) probably_damaging(0.91) TCGA-BF-A5EP-01 5 177171896 177171896 G A FAM153A Missense_Mutation p.A34V 0.32 tolerated_low_confidence(0.09) possibly_damaging(0.695) TCGA-BF-A5EP-01 5 180001196 180001196 G A CNOT6 Missense_Mutation p.R557K 0.78 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-BF-A5EP-01 5 180001197 180001197 G A CNOT6 Silent p.R557R 0.76 TCGA-BF-A5EP-01 5 79029984 79029984 C T CMYA5 Missense_Mutation p.S1799L 0.81 probably_damaging(0.95) TCGA-BF-A5EP-01 5 79368381 79368381 G A THBS4 Intron 0.80 TCGA-BF-A5EP-01 5 96232551 96232551 G A ERAP2 Nonsense_Mutation p.W496* 0.68 TCGA-BF-A5EP-01 6 28829509 28829509 C T XXbac-BPG308K3.6 RNA 0.41 TCGA-BF-A5EP-01 6 33632842 33632842 C T ITPR3 Missense_Mutation p.P421S 0.36 tolerated(0.3) benign(0.026) TCGA-BF-A5EP-01 6 43572458 43572458 C G POLH Missense_Mutation p.L331V 0.44 deleterious(0) probably_damaging(0.909) TCGA-BF-A5EP-01 6 47650286 47650286 G A GPR111 Missense_Mutation p.G664E 0.33 deleterious(0) probably_damaging(0.987) TCGA-BF-A5EP-01 6 55304265 55304265 C T HMGCLL1 Silent p.L326L 0.41 TCGA-BF-A5EP-01 6 74062990 74062990 G A DPPA5 3'UTR 0.06 TCGA-BF-A5EP-01 6 80634669 80634669 C T ELOVL4 Silent p.R123R 0.48 TCGA-BF-A5EP-01 6 85446857 85446857 T A TBX18 Missense_Mutation p.Y457F 0.46 tolerated(0.31) probably_damaging(0.956) TCGA-BF-A5EP-01 7 101870646 101870646 G A CUX1 Splice_Site p.X1055_splice 0.40 TCGA-BF-A5EP-01 7 112424013 112424013 G A TMEM168 Missense_Mutation p.L290F 0.26 tolerated(0.72) benign(0.002) TCGA-BF-A5EP-01 7 120770263 120770263 G A CPED1 Missense_Mutation p.V498I 0.32 tolerated(0.21) benign(0.012) TCGA-BF-A5EP-01 7 126410073 126410073 C A GRM8 Missense_Mutation p.K401N 0.05 deleterious(0) possibly_damaging(0.831) TCGA-BF-A5EP-01 7 131195728 131195728 G A PODXL Missense_Mutation p.P189S 0.31 tolerated(0.06) benign(0.003) TCGA-BF-A5EP-01 7 139268748 139268748 G A HIPK2 Missense_Mutation p.S927F 0.25 deleterious(0) probably_damaging(0.962) TCGA-BF-A5EP-01 7 142250982 142250982 C T TRBV6-4 Missense_Mutation p.G22E 0.26 tolerated(0.25) benign(0.052) TCGA-BF-A5EP-01 7 143085408 143085408 C T ZYX Nonsense_Mutation p.Q374* 0.27 TCGA-BF-A5EP-01 7 1498827 1498827 C T MICALL2 Missense_Mutation p.D46N 0.45 deleterious(0.01) probably_damaging(0.966) TCGA-BF-A5EP-01 7 150094384 150094384 C T ZNF775 Missense_Mutation p.P272L 0.56 tolerated(0.33) benign(0.018) TCGA-BF-A5EP-01 7 150094385 150094385 C T ZNF775 Silent p.P272P 0.54 TCGA-BF-A5EP-01 7 47884605 47884605 G A PKD1L1 Missense_Mutation p.S1742F 0.41 deleterious(0.04) benign(0.334) TCGA-BF-A5EP-01 7 53103507 53103507 G A POM121L12 Missense_Mutation p.G48D 0.36 tolerated(0.14) probably_damaging(0.982) TCGA-BF-A5EP-01 7 83037702 83037702 C T SEMA3E Missense_Mutation p.D218N 0.20 tolerated(0.06) benign(0.113) TCGA-BF-A5EP-01 7 92027553 92027553 C T ANKIB1 Missense_Mutation p.P854S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BF-A5EP-01 7 97823529 97823529 C T LMTK2 Missense_Mutation p.S1251F 0.39 tolerated(0.71) benign(0.005) TCGA-BF-A5EP-01 7 97823530 97823530 C T LMTK2 Silent p.S1251S 0.38 TCGA-BF-A5EP-01 8 146156727 146156727 G A ZNF16 Silent p.I482I 0.40 TCGA-BF-A5EP-01 8 22146174 22146174 C T PIWIL2 Silent p.F327F 0.47 TCGA-BF-A5EP-01 8 25265592 25265592 C T DOCK5 Silent p.I1729I 0.62 TCGA-BF-A5EP-01 8 2813161 2813161 C T CSMD1 Missense_Mutation p.R3315K 0.42 possibly_damaging(0.73) TCGA-BF-A5EP-01 8 28321140 28321140 G A FBXO16 Missense_Mutation p.R111C 0.46 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EP-01 8 55049988 55049988 G A MRPL15 Missense_Mutation p.E142K 0.37 tolerated(0.1) benign(0.078) TCGA-BF-A5EP-01 9 123166368 123166368 T A CDK5RAP2 Missense_Mutation p.S1663C 0.86 deleterious(0.04) possibly_damaging(0.57) TCGA-BF-A5EP-01 9 125827631 125827631 C T RABGAP1 Missense_Mutation p.S600F 0.68 deleterious(0) probably_damaging(0.977) TCGA-BF-A5EP-01 9 125827633 125827633 C T RABGAP1 Missense_Mutation p.P601S 0.68 tolerated(0.44) probably_damaging(0.999) TCGA-BF-A5EP-01 9 127101905 127101905 C A NEK6 Missense_Mutation p.F260L 0.75 tolerated(0.11) possibly_damaging(0.536) TCGA-BF-A5EP-01 9 134361078 134361078 C T PRRC2B Intron 0.74 TCGA-BF-A5EP-01 9 84533464 84533464 C G SPATA31D5P RNA 0.67 TCGA-BF-A5EP-01 9 99694529 99694529 G A NUTM2G Missense_Mutation p.G181E 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-BF-A5EP-01 X 111090623 111090623 G T TRPC5 Missense_Mutation p.H473Q 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-BF-A5EP-01 X 114536587 114536587 G A LUZP4 Missense_Mutation p.G41E 0.52 tolerated(0.8) benign(0.012) TCGA-BF-A5EP-01 X 138880881 138880881 G A ATP11C Silent p.L247L 0.56 TCGA-BF-A5EP-01 X 151909302 151909302 C T CSAG1 3'UTR 0.41 TCGA-BF-A5EP-01 X 23018527 23018527 G A DDX53 Missense_Mutation p.S118N 0.54 tolerated(0.8) benign(0.001) TCGA-BF-A5EP-01 X 24593424 24593424 G A PCYT1B Silent p.Y240Y 0.22 TCGA-BF-A5EP-01 X 41031173 41031173 G C USP9X Missense_Mutation p.R1037T 0.05 tolerated(0.07) probably_damaging(0.942) TCGA-BF-A5EP-01 X 46918403 46918403 C T JADE3 Missense_Mutation p.P799L 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.894) TCGA-BF-A5EP-01 X 64140100 64140100 G T ZC4H2 Missense_Mutation p.L87I 0.52 tolerated(0.12) benign(0.139) TCGA-BF-A5EP-01 X 70357586 70357586 C T MED12 Missense_Mutation p.P1946L 0.24 benign(0.197) TCGA-BF-A5EP-01 X 70683860 70683860 C T TAF1 Silent p.S1882S 0.47 TCGA-BF-A5EP-01 X 71812989 71812989 C T PHKA1 Missense_Mutation p.G1070R 0.50 deleterious(0) probably_damaging(0.989) TCGA-BF-A5EP-01 X 73047198 73047198 G A XIST RNA 0.52 TCGA-BF-A5EP-01 X 78011160 78011160 A G LPAR4 Missense_Mutation p.Y265C 0.17 deleterious(0) probably_damaging(0.994) TCGA-BF-A5EP-01 X 78216449 78216449 G A P2RY10 Nonsense_Mutation p.W144* 0.23 TCGA-BF-A5EP-01 X 79698321 79698321 G A FAM46D Missense_Mutation p.E95K 0.22 tolerated(0.53) benign(0.021) TCGA-BF-A5EP-01 X 95940190 95940190 G A DIAPH2 Splice_Site p.X44_splice 0.55 TCGA-BF-A5EP-01 X 9907235 9907235 G A SHROOM2 Silent p.R1380R 0.39 TCGA-BF-A5EP-01 X 9912706 9912706 G A SHROOM2 Missense_Mutation p.R1446H 0.13 deleterious(0) probably_damaging(0.96) TCGA-BF-A5EQ-01 10 101483841 101483841 C T COX15 Missense_Mutation p.E208K 0.33 deleterious(0.03) benign(0.142) TCGA-BF-A5EQ-01 10 101590171 101590171 C T ABCC2 Missense_Mutation p.R910C 0.27 tolerated(0.05) possibly_damaging(0.656) TCGA-BF-A5EQ-01 10 102568940 102568940 A G PAX2 Missense_Mutation p.N312S 0.39 tolerated(0.54) benign(0.129) TCGA-BF-A5EQ-01 10 102762446 102762446 C T LZTS2 Missense_Mutation p.P51S 0.23 tolerated(0.2) benign(0) TCGA-BF-A5EQ-01 10 105145100 105145100 C T TAF5 Missense_Mutation p.S561F 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-BF-A5EQ-01 10 108337254 108337254 C A SORCS1 Intron 0.21 TCGA-BF-A5EQ-01 10 115480834 115480834 C T CASP7 Missense_Mutation p.R85W 0.40 deleterious(0.02) possibly_damaging(0.74) TCGA-BF-A5EQ-01 10 116335243 116335243 C T ABLIM1 Silent p.V165V 0.14 TCGA-BF-A5EQ-01 10 116605957 116605957 C T FAM160B1 Missense_Mutation p.S410F 0.13 deleterious(0) probably_damaging(0.972) TCGA-BF-A5EQ-01 10 116975592 116975592 G A ATRNL1 Missense_Mutation p.G496R 0.47 tolerated(0.37) benign(0.393) TCGA-BF-A5EQ-01 10 121586293 121586293 C T INPP5F Silent p.L800L 0.33 TCGA-BF-A5EQ-01 10 122643372 122643372 C T WDR11 Missense_Mutation p.S607F 0.14 deleterious(0) benign(0.011) TCGA-BF-A5EQ-01 10 124377610 124377610 G A DMBT1 Missense_Mutation p.G1528S 0.14 tolerated(0.1) probably_damaging(1) TCGA-BF-A5EQ-01 10 124377707 124377707 G A DMBT1 Missense_Mutation p.G1560E 0.15 tolerated(0.13) probably_damaging(1) TCGA-BF-A5EQ-01 10 129861391 129861391 G A PTPRE Missense_Mutation p.E224K 0.24 deleterious(0.02) possibly_damaging(0.894) TCGA-BF-A5EQ-01 10 131666171 131666171 G A EBF3 Missense_Mutation p.P254S 0.23 deleterious(0) possibly_damaging(0.869) TCGA-BF-A5EQ-01 10 17271887 17271887 G A VIM Missense_Mutation p.E156K 0.18 deleterious(0) possibly_damaging(0.522) TCGA-BF-A5EQ-01 10 18292236 18292236 G A SLC39A12 Nonsense_Mutation p.W632* 0.05 TCGA-BF-A5EQ-01 10 20432314 20432314 C T PLXDC2 Missense_Mutation p.S211F 0.41 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 10 25887856 25887856 G A GPR158 Missense_Mutation p.E1101K 0.07 tolerated(0.71) benign(0.028) TCGA-BF-A5EQ-01 10 30739328 30739328 C T MAP3K8 Silent p.L216L 0.24 TCGA-BF-A5EQ-01 10 31809607 31809607 C T ZEB1 Silent p.P449P 0.44 TCGA-BF-A5EQ-01 10 33491828 33491828 G A NRP1 Nonsense_Mutation p.Q619* 0.41 TCGA-BF-A5EQ-01 10 37508761 37508761 T C ANKRD30A Missense_Mutation p.F1318S 0.55 deleterious(0.01) benign(0.03) TCGA-BF-A5EQ-01 10 38647384 38647384 C T HSD17B7P2 RNA 0.38 TCGA-BF-A5EQ-01 10 44053082 44053082 G A ZNF239 Missense_Mutation p.P149L 0.33 tolerated(0.11) benign(0.004) TCGA-BF-A5EQ-01 10 46321432 46321432 G A AGAP4 Silent p.A641A 0.17 TCGA-BF-A5EQ-01 10 49395274 49395274 C T FRMPD2 Missense_Mutation p.D743N 0.18 tolerated(0.11) benign(0.018) TCGA-BF-A5EQ-01 10 50530596 50530596 G A C10orf71 Missense_Mutation p.M2I 0.43 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 10 50955123 50955123 C T OGDHL Silent p.G373G 0.23 TCGA-BF-A5EQ-01 10 52610472 52610472 C T A1CF Missense_Mutation p.G26R 0.40 tolerated(0.52) benign(0) TCGA-BF-A5EQ-01 10 64573279 64573279 C T EGR2 Silent p.R373R 0.42 TCGA-BF-A5EQ-01 10 6470231 6470231 C T PRKCQ Missense_Mutation p.D687N 0.36 tolerated(0.5) possibly_damaging(0.613) TCGA-BF-A5EQ-01 10 81056323 81056323 C T ZMIZ1 Silent p.S442S 0.17 TCGA-BF-A5EQ-01 10 88259733 88259733 C T WAPAL Missense_Mutation p.D423N 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-BF-A5EQ-01 10 88416962 88416962 C T OPN4 Missense_Mutation p.R101C 0.16 deleterious_low_confidence(0.04) benign(0.002) TCGA-BF-A5EQ-01 10 88768734 88768734 C T RP11-96C23.10 3'Flank 0.17 TCGA-BF-A5EQ-01 10 95517909 95517909 C T LGI1 Missense_Mutation p.S3L 0.41 tolerated_low_confidence(0.13) benign(0.003) TCGA-BF-A5EQ-01 10 98380287 98380287 C T PIK3AP1 Missense_Mutation p.R588K 0.21 tolerated(0.91) benign(0.164) TCGA-BF-A5EQ-01 10 99211590 99211590 C T ZDHHC16 Missense_Mutation p.S53F 0.42 deleterious(0) possibly_damaging(0.566) TCGA-BF-A5EQ-01 11 101775562 101775562 C T ANGPTL5 Missense_Mutation p.R141K 0.16 tolerated(0.79) benign(0.009) TCGA-BF-A5EQ-01 11 102824954 102824954 G A MMP13 Missense_Mutation p.P190S 0.40 tolerated(0.08) probably_damaging(1) TCGA-BF-A5EQ-01 11 107422633 107422633 G A ALKBH8 Missense_Mutation p.P201S 0.73 deleterious(0.02) possibly_damaging(0.831) TCGA-BF-A5EQ-01 11 108381921 108381921 G A EXPH5 Missense_Mutation p.S1438F 0.14 tolerated(0.11) benign(0.044) TCGA-BF-A5EQ-01 11 1090784 1090784 A T MUC2 Nonsense_Mutation p.K1227* 0.39 TCGA-BF-A5EQ-01 11 114568808 114568808 G A NXPE2 Silent p.G58G 0.25 TCGA-BF-A5EQ-01 11 116701291 116701291 G A APOC3 5'UTR 0.23 TCGA-BF-A5EQ-01 11 117376369 117376369 G A DSCAML1 Missense_Mutation p.S681L 0.41 tolerated(0.06) probably_damaging(0.974) TCGA-BF-A5EQ-01 11 117869813 117869813 G T IL10RA Missense_Mutation p.Q398H 0.21 deleterious(0.01) possibly_damaging(0.907) TCGA-BF-A5EQ-01 11 118898961 118898961 G A SLC37A4 Silent p.F108F 0.29 TCGA-BF-A5EQ-01 11 120929178 120929178 C T TBCEL Silent p.A279A 0.15 TCGA-BF-A5EQ-01 11 1213329 1213329 C T MUC5AC RNA 0.05 TCGA-BF-A5EQ-01 11 1213498 1213498 G A MUC5AC RNA 0.03 TCGA-BF-A5EQ-01 11 123513174 123513174 G A SCN3B Missense_Mutation p.P142L 0.30 tolerated(0.37) benign(0.038) TCGA-BF-A5EQ-01 11 123886755 123886755 G C OR10G4 Missense_Mutation p.Q158H 0.16 tolerated(0.17) benign(0.061) TCGA-BF-A5EQ-01 11 124310597 124310597 G A OR8B8 Missense_Mutation p.P129S 0.38 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BF-A5EQ-01 11 124757290 124757290 G A ROBO4 Missense_Mutation p.P721L 0.11 tolerated(0.07) possibly_damaging(0.797) TCGA-BF-A5EQ-01 11 126294442 126294442 C T KIRREL3 3'UTR 0.71 TCGA-BF-A5EQ-01 11 133814214 133814214 G A IGSF9B Missense_Mutation p.R104C 0.13 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 11 14852256 14852256 A G PDE3B Missense_Mutation p.N607S 0.44 tolerated(0.66) benign(0.002) TCGA-BF-A5EQ-01 11 1578648 1578648 C A DUSP8 Silent p.G326G 0.40 TCGA-BF-A5EQ-01 11 18118329 18118329 G A SAAL1 Missense_Mutation p.P108S 0.30 tolerated(0.12) benign(0.02) TCGA-BF-A5EQ-01 11 1904749 1904749 G A LSP1 Missense_Mutation p.D281N 0.17 deleterious_low_confidence(0.05) possibly_damaging(0.905) TCGA-BF-A5EQ-01 11 25004789 25004789 C T LUZP2 Missense_Mutation p.P239S 0.21 tolerated(0.72) possibly_damaging(0.776) TCGA-BF-A5EQ-01 11 2594141 2594141 G A KCNQ1 Silent p.L282L 0.42 TCGA-BF-A5EQ-01 11 33566662 33566662 C T KIAA1549L Silent p.L744L 0.15 TCGA-BF-A5EQ-01 11 4388792 4388792 G A OR52B4 Missense_Mutation p.S245F 0.40 deleterious(0.01) benign(0.443) TCGA-BF-A5EQ-01 11 47304072 47304072 C T MADD Missense_Mutation p.P537L 0.10 tolerated(0.76) benign(0.001) TCGA-BF-A5EQ-01 11 47612288 47612288 G A C1QTNF4 Silent p.S25S 0.41 TCGA-BF-A5EQ-01 11 4824843 4824843 G A OR52R1 Silent p.I256I 0.04 TCGA-BF-A5EQ-01 11 4842640 4842640 C T OR51F2 Nonsense_Mutation p.Q9* 0.40 TCGA-BF-A5EQ-01 11 5021084 5021084 C T OR51L1 Missense_Mutation p.P291L 0.27 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 11 55419024 55419024 C T OR4S2 Silent p.S215S 0.43 TCGA-BF-A5EQ-01 11 56086466 56086466 G A OR8K3 Missense_Mutation p.M228I 0.22 deleterious_low_confidence(0.04) benign(0.139) TCGA-BF-A5EQ-01 11 56310107 56310107 G A OR5M11 Silent p.S209S 0.42 TCGA-BF-A5EQ-01 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.16 TCGA-BF-A5EQ-01 11 57177497 57177497 G A SLC43A3 Silent p.P386P 0.41 TCGA-BF-A5EQ-01 11 58978701 58978701 G A MPEG1 Silent p.S546S 0.16 TCGA-BF-A5EQ-01 11 59812156 59812156 G A OOSP2 Missense_Mutation p.E86K 0.36 deleterious(0.03) benign(0.163) TCGA-BF-A5EQ-01 11 6265625 6265625 C T CNGA4 Missense_Mutation p.P572S 0.29 tolerated_low_confidence(0.51) benign(0) TCGA-BF-A5EQ-01 11 64507231 64507231 G A RASGRP2 Silent p.P191P 0.41 TCGA-BF-A5EQ-01 11 65623154 65623154 G A CFL1 Missense_Mutation p.S120F 0.45 deleterious(0) probably_damaging(0.991) TCGA-BF-A5EQ-01 11 66468611 66468611 G A SPTBN2 Silent p.L987L 0.27 TCGA-BF-A5EQ-01 11 6891697 6891697 T A OR10A2 Missense_Mutation p.F238I 0.18 deleterious(0) possibly_damaging(0.904) TCGA-BF-A5EQ-01 11 840216 840216 A C POLR2L 3'UTR 0.30 TCGA-BF-A5EQ-01 11 85989435 85989435 C T EED Intron 0.25 TCGA-BF-A5EQ-01 11 93837781 93837781 G A HEPHL1 Missense_Mutation p.E924K 0.35 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 12 100551373 100551373 C T AC010203.1 5'Flank 0.29 TCGA-BF-A5EQ-01 12 103234250 103234250 C T PAH Missense_Mutation p.D415N 0.19 tolerated(1) benign(0.006) TCGA-BF-A5EQ-01 12 104083682 104083682 C T STAB2 Missense_Mutation p.S1035F 0.12 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EQ-01 12 107712861 107712861 C T BTBD11 Silent p.G48G 0.38 TCGA-BF-A5EQ-01 12 108051333 108051333 C T BTBD11 Silent p.L1051L 0.42 TCGA-BF-A5EQ-01 12 111160329 111160329 A G PPP1CC Missense_Mutation p.V232A 0.18 deleterious_low_confidence(0.02) benign(0.158) TCGA-BF-A5EQ-01 12 11420926 11420926 C T PRB3 Missense_Mutation p.G86E 0.32 deleterious(0) unknown(0) TCGA-BF-A5EQ-01 12 119957997 119957997 G A CCDC60 Missense_Mutation p.S347N 0.25 tolerated(0.08) possibly_damaging(0.888) TCGA-BF-A5EQ-01 12 122340959 122340959 C T PSMD9 Silent p.T167T 0.34 TCGA-BF-A5EQ-01 12 125834785 125834785 G A TMEM132B Silent p.E280E 0.04 TCGA-BF-A5EQ-01 12 126137025 126137025 G A TMEM132B Silent p.K646K 0.46 TCGA-BF-A5EQ-01 12 133235967 133235967 G A POLE Silent p.F1063F 0.12 TCGA-BF-A5EQ-01 12 18891500 18891500 C T CAPZA3 Nonsense_Mutation p.Q100* 0.38 TCGA-BF-A5EQ-01 12 20792848 20792848 G A PDE3A Missense_Mutation p.M736I 0.34 deleterious(0.01) benign(0.056) TCGA-BF-A5EQ-01 12 21689921 21689921 C T GYS2 Silent p.G693G 0.38 TCGA-BF-A5EQ-01 12 21728868 21728868 G A GYS2 Missense_Mutation p.P143S 0.33 deleterious(0.01) probably_damaging(1) TCGA-BF-A5EQ-01 12 21965074 21965074 C T ABCC9 Missense_Mutation p.G1374R 0.30 deleterious(0.03) probably_damaging(0.983) TCGA-BF-A5EQ-01 12 42491381 42491381 G A GXYLT1 Nonsense_Mutation p.R342* 0.15 TCGA-BF-A5EQ-01 12 43860578 43860578 T G ADAMTS20 Missense_Mutation p.D415A 0.25 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.23 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 12 49226329 49226329 G A DDX23 Missense_Mutation p.P611S 0.20 tolerated(0.11) benign(0.297) TCGA-BF-A5EQ-01 12 51583960 51583960 T G POU6F1 3'UTR 0.45 TCGA-BF-A5EQ-01 12 52841704 52841704 C T KRT6B Missense_Mutation p.E428K 0.26 tolerated(0.38) possibly_damaging(0.602) TCGA-BF-A5EQ-01 12 53012211 53012211 C T KRT73 Missense_Mutation p.R33Q 0.18 tolerated(0.11) benign(0.005) TCGA-BF-A5EQ-01 12 53089622 53089622 C T KRT77 Silent p.V283V 0.23 TCGA-BF-A5EQ-01 12 53217736 53217736 C T KRT79 Missense_Mutation p.E361K 0.54 deleterious(0.03) possibly_damaging(0.862) TCGA-BF-A5EQ-01 12 53804996 53804996 C T SP1 Missense_Mutation p.S777F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-BF-A5EQ-01 12 54913090 54913090 G A NCKAP1L Silent p.V533V 0.41 TCGA-BF-A5EQ-01 12 54913091 54913091 G A NCKAP1L Missense_Mutation p.E534K 0.41 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EQ-01 12 57111515 57111515 G A NACA Intron 0.43 TCGA-BF-A5EQ-01 12 57441158 57441158 G A MYO1A Missense_Mutation p.A120V 0.34 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EQ-01 12 662587 662587 C T B4GALNT3 Missense_Mutation p.P500S 0.22 tolerated(0.09) benign(0.063) TCGA-BF-A5EQ-01 12 68647045 68647045 C T IL22 Missense_Mutation p.E62K 0.29 tolerated(0.37) benign(0.402) TCGA-BF-A5EQ-01 12 6933619 6933619 C T GPR162 Silent p.L185L 0.23 TCGA-BF-A5EQ-01 12 70925841 70925841 G A PTPRB Missense_Mutation p.H2160Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 12 7476893 7476893 A C ACSM4 Missense_Mutation p.T445P 0.55 deleterious(0.01) possibly_damaging(0.892) TCGA-BF-A5EQ-01 12 7633767 7633767 C T CD163 Missense_Mutation p.M1111I 0.31 tolerated(0.21) benign(0) TCGA-BF-A5EQ-01 12 9085271 9085272 GT - PHC1 Frame_Shift_Del p.Q406Hfs*81 0.12 TCGA-BF-A5EQ-01 13 100635317 100635317 C T ZIC2 Silent p.F333F 0.33 TCGA-BF-A5EQ-01 13 110866326 110866326 C T COL4A1 Missense_Mutation p.G61R 0.34 unknown(0) TCGA-BF-A5EQ-01 13 111996514 111996514 G A TEX29 3'UTR 0.31 TCGA-BF-A5EQ-01 13 20797527 20797527 G A GJB6 Silent p.F31F 0.34 TCGA-BF-A5EQ-01 13 25745442 25745442 G A AMER2 Missense_Mutation p.H106Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EQ-01 13 29600589 29600589 C T MTUS2 Missense_Mutation p.P595L 0.45 tolerated(0.24) benign(0.009) TCGA-BF-A5EQ-01 13 32812098 32812098 C T FRY Silent p.S2131S 0.43 TCGA-BF-A5EQ-01 13 33703487 33703487 C T STARD13 Missense_Mutation p.E443K 0.27 tolerated(0.32) benign(0.012) TCGA-BF-A5EQ-01 13 36764118 36764118 G A SOHLH2 Silent p.I279I 0.30 TCGA-BF-A5EQ-01 13 36764178 36764178 C T SOHLH2 Silent p.R259R 0.40 TCGA-BF-A5EQ-01 13 39358849 39358849 G A FREM2 Missense_Mutation p.E1975K 0.23 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 13 42259355 42259355 C T VWA8 Nonsense_Mutation p.W1385* 0.26 TCGA-BF-A5EQ-01 13 42273300 42273300 G A VWA8 Silent p.F1157F 0.12 TCGA-BF-A5EQ-01 13 98043771 98043771 T A MBNL2 3'UTR 0.27 TCGA-BF-A5EQ-01 13 98628987 98628987 C T IPO5 Silent p.L31L 0.27 TCGA-BF-A5EQ-01 13 99461566 99461566 A T DOCK9 Intron 0.41 TCGA-BF-A5EQ-01 14 100996221 100996221 C T WDR25 Missense_Mutation p.A493V 0.39 deleterious(0) probably_damaging(0.982) TCGA-BF-A5EQ-01 14 104263709 104263709 A G PPP1R13B Silent p.N52N 0.37 TCGA-BF-A5EQ-01 14 104641567 104641567 C T KIF26A Silent p.F814F 0.27 TCGA-BF-A5EQ-01 14 105407704 105407704 A T AHNAK2 Missense_Mutation p.M4695K 0.46 benign(0.009) TCGA-BF-A5EQ-01 14 105412631 105412631 C T AHNAK2 Missense_Mutation p.E3053K 0.21 benign(0.247) TCGA-BF-A5EQ-01 14 19574185 19574185 G A POTEG Splice_Site p.X415_splice 0.17 TCGA-BF-A5EQ-01 14 20940614 20940614 C T PNP Silent p.I53I 0.17 TCGA-BF-A5EQ-01 14 22591956 22591956 G A TRAV26-1 Missense_Mutation p.G14E 0.42 deleterious(0) possibly_damaging(0.805) TCGA-BF-A5EQ-01 14 22636323 22636323 G A TRAV29DV5 3'Flank 0.20 TCGA-BF-A5EQ-01 14 23072594 23072594 C A ABHD4 Missense_Mutation p.P138T 0.56 deleterious(0.04) benign(0.001) TCGA-BF-A5EQ-01 14 23072595 23072595 C T ABHD4 Missense_Mutation p.P138L 0.56 deleterious(0.01) benign(0.018) TCGA-BF-A5EQ-01 14 23396824 23396824 C T PRMT5 Missense_Mutation p.A121T 0.21 deleterious(0) possibly_damaging(0.743) TCGA-BF-A5EQ-01 14 24545621 24545621 G A CPNE6 Missense_Mutation p.E371K 0.22 tolerated(0.45) benign(0.121) TCGA-BF-A5EQ-01 14 24885774 24885774 C T NYNRIN Missense_Mutation p.P1607S 0.29 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-BF-A5EQ-01 14 25076889 25076889 G A GZMH Missense_Mutation p.P90S 0.16 tolerated(0.25) benign(0.059) TCGA-BF-A5EQ-01 14 32560927 32560927 C T ARHGAP5 Missense_Mutation p.P351L 0.26 deleterious(0) benign(0.279) TCGA-BF-A5EQ-01 14 39304943 39304943 G T LINC00639 RNA 0.18 TCGA-BF-A5EQ-01 14 39716400 39716400 C T MIA2 Missense_Mutation p.R208C 0.30 tolerated(0.16) benign(0.398) TCGA-BF-A5EQ-01 14 50074322 50074322 T A LRR1 Missense_Mutation p.Y163N 0.11 tolerated(1) benign(0.005) TCGA-BF-A5EQ-01 14 60932705 60932705 C T C14orf39 Missense_Mutation p.D322N 0.24 tolerated(0.54) possibly_damaging(0.908) TCGA-BF-A5EQ-01 14 65208864 65208864 C T PLEKHG3 Missense_Mutation p.P821S 0.32 tolerated(0.17) benign(0.02) TCGA-BF-A5EQ-01 14 70924369 70924369 G A ADAM21 Silent p.R51R 0.18 TCGA-BF-A5EQ-01 14 77750178 77750178 G A POMT2 Missense_Mutation p.P539S 0.34 tolerated(0.32) benign(0.001) TCGA-BF-A5EQ-01 14 81422151 81422151 G A TSHR Missense_Mutation p.D43N 0.40 tolerated(0.09) benign(0.01) TCGA-BF-A5EQ-01 14 91146847 91146847 G A TTC7B Missense_Mutation p.A328V 0.42 deleterious(0.01) possibly_damaging(0.873) TCGA-BF-A5EQ-01 14 94079205 94079205 G A UNC79 Missense_Mutation p.D1096N 0.42 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 14 94156622 94156622 C T UNC79 Silent p.I2277I 0.52 TCGA-BF-A5EQ-01 14 94464524 94464524 G A LINC00521 RNA 0.20 TCGA-BF-A5EQ-01 14 95560349 95560349 G A DICER1 Missense_Mutation p.S1747L 0.40 deleterious(0) benign(0.166) TCGA-BF-A5EQ-01 14 96707272 96707272 G A BDKRB2 Missense_Mutation p.D203N 0.19 tolerated(0.16) benign(0.027) TCGA-BF-A5EQ-01 15 100996217 100996217 G A CERS3 Missense_Mutation p.H294Y 0.47 tolerated(1) benign(0.001) TCGA-BF-A5EQ-01 15 101606314 101606314 C T LRRK1 Missense_Mutation p.S1891F 0.32 deleterious_low_confidence(0.02) benign(0.157) TCGA-BF-A5EQ-01 15 22382676 22382676 C T OR4N4 Silent p.F68F 0.17 TCGA-BF-A5EQ-01 15 22383122 22383122 C T OR4N4 Missense_Mutation p.S217F 0.18 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 15 24921266 24921266 C T NPAP1 Silent p.V84V 0.27 TCGA-BF-A5EQ-01 15 24921501 24921501 G A NPAP1 Missense_Mutation p.D163N 0.12 tolerated(0.06) benign(0.066) TCGA-BF-A5EQ-01 15 24923366 24923366 C T NPAP1 Silent p.T784T 0.25 TCGA-BF-A5EQ-01 15 25449332 25449332 G A SNORD115-20 5'Flank 0.24 TCGA-BF-A5EQ-01 15 31320648 31320648 C T TRPM1 Silent p.E1077E 0.16 TCGA-BF-A5EQ-01 15 33962640 33962640 G A RYR3 Missense_Mutation p.E1915K 0.23 benign(0.097) TCGA-BF-A5EQ-01 15 34077940 34077940 G A RYR3 Missense_Mutation p.D3116N 0.36 benign(0.002) TCGA-BF-A5EQ-01 15 34355172 34355172 A G CHRM5 Missense_Mutation p.N85S 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.64 TCGA-BF-A5EQ-01 15 42298225 42298225 C T PLA2G4E Missense_Mutation p.R163Q 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-BF-A5EQ-01 15 42470756 42470756 G A VPS39 Missense_Mutation p.P244L 0.35 deleterious(0) probably_damaging(0.976) TCGA-BF-A5EQ-01 15 49584706 49584706 C T GALK2 Silent p.T313T 0.29 TCGA-BF-A5EQ-01 15 51350637 51350637 G A TNFAIP8L3 Missense_Mutation p.P107L 0.39 deleterious(0.02) benign(0.125) TCGA-BF-A5EQ-01 15 51791004 51791004 G C DMXL2 Missense_Mutation p.Q1473E 0.06 tolerated(0.18) possibly_damaging(0.615) TCGA-BF-A5EQ-01 15 51791169 51791169 G A DMXL2 Nonsense_Mutation p.R1418* 0.08 TCGA-BF-A5EQ-01 15 51791323 51791323 G A DMXL2 Silent p.A1366A 0.06 TCGA-BF-A5EQ-01 15 53994476 53994476 G A WDR72 Missense_Mutation p.S475L 0.27 tolerated(0.13) possibly_damaging(0.657) TCGA-BF-A5EQ-01 15 54306001 54306001 G A UNC13C Missense_Mutation p.E301K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-BF-A5EQ-01 15 55912177 55912177 G A PRTG 3'UTR 0.32 TCGA-BF-A5EQ-01 15 57524951 57524951 G A TCF12 Silent p.T289T 0.25 TCGA-BF-A5EQ-01 15 66210331 66210331 C T MEGF11 Missense_Mutation p.G687R 0.38 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 15 68619031 68619031 G A ITGA11 Silent p.S724S 0.25 TCGA-BF-A5EQ-01 15 73636140 73636140 C T HCN4 Nonsense_Mutation p.W265* 0.34 TCGA-BF-A5EQ-01 15 75111629 75111629 G A LMAN1L Intron 0.12 TCGA-BF-A5EQ-01 15 76016645 76016645 G A ODF3L1 Missense_Mutation p.M35I 0.34 tolerated(0.16) benign(0.164) TCGA-BF-A5EQ-01 15 81654585 81654585 C T TMC3 Missense_Mutation p.E124K 0.28 deleterious(0) probably_damaging(0.971) TCGA-BF-A5EQ-01 15 84560104 84560104 C T ADAMTSL3 Missense_Mutation p.P412L 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 15 85383770 85383770 G A ALPK3 Silent p.L622L 0.35 TCGA-BF-A5EQ-01 15 89400774 89400774 C T ACAN Missense_Mutation p.P1653L 0.15 tolerated(0.21) probably_damaging(0.999) TCGA-BF-A5EQ-01 15 90026361 90026361 G A RHCG Silent p.I153I 0.19 TCGA-BF-A5EQ-01 15 90794788 90794788 C T TTLL13 Missense_Mutation p.S87L 0.26 tolerated(0.33) benign(0.003) TCGA-BF-A5EQ-01 15 91428653 91428653 G A FES Silent p.E75E 0.45 TCGA-BF-A5EQ-01 15 91454696 91454696 C T MAN2A2 Silent p.V675V 0.35 TCGA-BF-A5EQ-01 15 91454697 91454697 C T MAN2A2 Missense_Mutation p.L676F 0.36 tolerated(0.15) benign(0.074) TCGA-BF-A5EQ-01 16 11096946 11096946 C T CLEC16A Missense_Mutation p.R363W 0.60 deleterious(0.01) possibly_damaging(0.899) TCGA-BF-A5EQ-01 16 1545587 1545587 C T TELO2 Silent p.V192V 0.47 TCGA-BF-A5EQ-01 16 19514870 19514870 T G GDE1 Missense_Mutation p.E306D 0.29 deleterious(0.03) probably_damaging(1) TCGA-BF-A5EQ-01 16 19729578 19729578 C T IQCK 5'UTR 0.44 TCGA-BF-A5EQ-01 16 21098308 21098308 C T DNAH3 Silent p.L913L 0.35 TCGA-BF-A5EQ-01 16 2160643 2160643 C T PKD1 Missense_Mutation p.E1509K 0.20 benign(0.052) TCGA-BF-A5EQ-01 16 25238413 25238413 G A AQP8 Missense_Mutation p.M209I 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-BF-A5EQ-01 16 26147027 26147027 A C HS3ST4 Missense_Mutation p.M277L 0.38 deleterious(0.04) probably_damaging(0.989) TCGA-BF-A5EQ-01 16 30535997 30535997 G A ZNF768 Silent p.A488A 0.31 TCGA-BF-A5EQ-01 16 31106780 31106780 G A VKORC1 5'Flank 0.21 TCGA-BF-A5EQ-01 16 46729582 46729582 C T ORC6 Silent p.V186V 0.22 TCGA-BF-A5EQ-01 16 4731692 4731692 C T MGRN1 Nonsense_Mutation p.Q425* 0.18 TCGA-BF-A5EQ-01 16 5047024 5047024 G A SEC14L5 Missense_Mutation p.G317S 0.58 deleterious(0.02) probably_damaging(0.995) TCGA-BF-A5EQ-01 16 50745178 50745178 C T NOD2 Silent p.I452I 0.26 TCGA-BF-A5EQ-01 16 50813882 50813882 C T CYLD Missense_Mutation p.P482L 0.30 deleterious(0) probably_damaging(0.989) TCGA-BF-A5EQ-01 16 51175567 51175567 G A SALL1 Missense_Mutation p.S189F 0.39 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 16 53404747 53404747 C T RP11-44F14.1 RNA 0.32 TCGA-BF-A5EQ-01 16 58314181 58314181 C T PRSS54 Missense_Mutation p.E379K 0.20 deleterious(0.04) benign(0.004) TCGA-BF-A5EQ-01 16 61760909 61760909 G A CDH8 Intron 0.30 TCGA-BF-A5EQ-01 16 66547653 66547653 G A TK2 Missense_Mutation p.P227L 0.24 deleterious(0.01) possibly_damaging(0.776) TCGA-BF-A5EQ-01 16 66946031 66946031 C T CDH16 Missense_Mutation p.E521K 0.33 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EQ-01 16 66968234 66968234 G A FAM96B Silent p.L12L 0.57 TCGA-BF-A5EQ-01 16 70010717 70010717 C T PDXDC2P RNA 0.17 TCGA-BF-A5EQ-01 16 71127835 71127835 C T HYDIN Missense_Mutation p.R444Q 0.40 possibly_damaging(0.846) TCGA-BF-A5EQ-01 16 72828274 72828274 G A ZFHX3 Silent p.S2769S 0.28 TCGA-BF-A5EQ-01 16 787312 787312 C T NARFL Silent p.R60R 0.15 TCGA-BF-A5EQ-01 16 88717414 88717414 T C CYBA Missense_Mutation p.Q3R 0.27 tolerated(0.09) benign(0.125) TCGA-BF-A5EQ-01 16 88766109 88766109 G A RNF166 Missense_Mutation p.S115L 0.20 deleterious(0) benign(0.023) TCGA-BF-A5EQ-01 16 89245904 89245904 C T CDH15 Silent p.S41S 0.18 TCGA-BF-A5EQ-01 16 89245905 89245905 C T CDH15 Missense_Mutation p.R42C 0.19 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 17 10398403 10398403 C T MYH1 Missense_Mutation p.E1771K 0.40 deleterious(0.01) possibly_damaging(0.734) TCGA-BF-A5EQ-01 17 10433157 10433157 C T MYH2 Missense_Mutation p.E978K 0.18 deleterious(0) benign(0.102) TCGA-BF-A5EQ-01 17 10541402 10541402 G A MYH3 Silent p.I1229I 0.20 TCGA-BF-A5EQ-01 17 16842985 16842985 G A TNFRSF13B Missense_Mutation p.P253L 0.27 tolerated(0.82) benign(0.007) TCGA-BF-A5EQ-01 17 28791887 28791887 C T CPD 3'UTR 0.31 TCGA-BF-A5EQ-01 17 2923823 2923823 G A RAP1GAP2 Missense_Mutation p.R562Q 0.16 deleterious(0.02) possibly_damaging(0.579) TCGA-BF-A5EQ-01 17 2995398 2995398 C T OR1D2 Missense_Mutation p.G298E 0.24 tolerated(0.12) benign(0.033) TCGA-BF-A5EQ-01 17 31258621 31258621 G A TMEM98 Silent p.L25L 0.50 TCGA-BF-A5EQ-01 17 3392538 3392538 T C ASPA Missense_Mutation p.V179A 0.10 deleterious(0.01) probably_damaging(1) TCGA-BF-A5EQ-01 17 36489156 36489156 C T GPR179 Missense_Mutation p.S672N 0.07 deleterious(0) probably_damaging(0.913) TCGA-BF-A5EQ-01 17 37898819 37898819 G A GRB7 Silent p.R75R 0.18 TCGA-BF-A5EQ-01 17 43585569 43585569 G A LRRC37A4P Intron 0.12 TCGA-BF-A5EQ-01 17 44851076 44851076 T A WNT3 Missense_Mutation p.I94L 0.38 tolerated(0.34) benign(0.006) TCGA-BF-A5EQ-01 17 47656328 47656328 G A NXPH3 Missense_Mutation p.G142E 0.15 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 17 48632937 48632937 C T SPATA20 Nonsense_Mutation p.Q775* 0.35 TCGA-BF-A5EQ-01 17 48761313 48761313 G A ABCC3 Missense_Mutation p.G1320R 0.62 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 17 48762114 48762114 C T ABCC3 Silent p.P1386P 0.34 TCGA-BF-A5EQ-01 17 5076244 5076244 G A USP6 Missense_Mutation p.D1398N 0.24 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-BF-A5EQ-01 17 5462708 5462708 C T NLRP1 Silent p.A436A 0.31 TCGA-BF-A5EQ-01 17 56581523 56581523 G A MTMR4 Missense_Mutation p.P515L 0.41 tolerated(0.17) benign(0.077) TCGA-BF-A5EQ-01 17 62080928 62080928 G A C17orf72 3'Flank 0.33 TCGA-BF-A5EQ-01 17 7132918 7132918 G A DVL2 Missense_Mutation p.R246C 0.21 deleterious(0.02) probably_damaging(0.943) TCGA-BF-A5EQ-01 17 7132919 7132919 G A DVL2 Silent p.P245P 0.21 TCGA-BF-A5EQ-01 17 7345135 7345135 C T FGF11 Silent p.T115T 0.25 TCGA-BF-A5EQ-01 17 7612692 7612692 C T EFNB3 Missense_Mutation p.S274F 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-BF-A5EQ-01 17 76446342 76446342 G A DNAH17 Silent p.S3664S 0.15 TCGA-BF-A5EQ-01 17 7671530 7671530 T C DNAH2 Missense_Mutation p.F1296L 0.41 probably_damaging(0.977) TCGA-BF-A5EQ-01 17 80739555 80739555 C T TBCD Silent p.T243T 0.17 TCGA-BF-A5EQ-01 17 8701065 8701065 G A MFSD6L Silent p.L458L 0.07 TCGA-BF-A5EQ-01 17 9729454 9729454 C T GLP2R Missense_Mutation p.P25L 0.50 tolerated_low_confidence(0.32) benign(0.003) TCGA-BF-A5EQ-01 17 9729455 9729455 C T GLP2R Silent p.P25P 0.55 TCGA-BF-A5EQ-01 18 14542972 14542972 C T POTEC Silent p.R58R 0.10 TCGA-BF-A5EQ-01 18 19997435 19997435 C T CTAGE1 Missense_Mutation p.E114K 0.34 tolerated(0.07) benign(0.426) TCGA-BF-A5EQ-01 18 21698135 21698135 C T TTC39C Silent p.S375S 0.22 TCGA-BF-A5EQ-01 18 28662223 28662223 C T DSC2 Missense_Mutation p.G415E 0.19 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 18 28966657 28966657 G A DSG4 Missense_Mutation p.E31K 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-BF-A5EQ-01 18 30092434 30092434 C T WBP11P1 RNA 0.21 TCGA-BF-A5EQ-01 18 3102553 3102553 G A MYOM1 Missense_Mutation p.P1165L 0.37 deleterious(0.02) possibly_damaging(0.618) TCGA-BF-A5EQ-01 18 31319635 31319635 C T ASXL3 Missense_Mutation p.S756F 0.34 benign(0.282) TCGA-BF-A5EQ-01 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.29 benign(0.006) TCGA-BF-A5EQ-01 18 31324950 31324950 C T ASXL3 Missense_Mutation p.S1713L 0.32 benign(0.017) TCGA-BF-A5EQ-01 18 39623734 39623734 C T PIK3C3 Missense_Mutation p.P714L 0.23 tolerated(0.16) possibly_damaging(0.648) TCGA-BF-A5EQ-01 18 40853555 40853555 C T SYT4 Missense_Mutation p.R280K 0.32 tolerated(0.09) benign(0.002) TCGA-BF-A5EQ-01 18 48248379 48248379 G A MAPK4 Missense_Mutation p.E255K 0.11 tolerated(0.13) benign(0.199) TCGA-BF-A5EQ-01 18 580618 580618 G A CETN1 Silent p.K70K 0.41 TCGA-BF-A5EQ-01 18 61449759 61449759 C T SERPINB7 Silent p.L51L 0.19 TCGA-BF-A5EQ-01 18 67508502 67508502 G A DOK6 Silent p.K293K 0.16 TCGA-BF-A5EQ-01 18 6999988 6999988 G A LAMA1 Missense_Mutation p.P1464L 0.31 deleterious(0.05) possibly_damaging(0.461) TCGA-BF-A5EQ-01 18 77246593 77246593 C T NFATC1 Missense_Mutation p.S800L 0.21 deleterious(0.03) benign(0.083) TCGA-BF-A5EQ-01 19 12474403 12474403 G A ZNF442 Missense_Mutation p.P15S 0.27 tolerated_low_confidence(0.82) benign(0.008) TCGA-BF-A5EQ-01 19 15296429 15296429 G A NOTCH3 Silent p.S671S 0.33 TCGA-BF-A5EQ-01 19 17091330 17091330 C T CPAMD8 Missense_Mutation p.R568H 0.17 tolerated(0.31) benign(0.012) TCGA-BF-A5EQ-01 19 18652761 18652761 G A FKBP8 Missense_Mutation p.P7L 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-BF-A5EQ-01 19 2732705 2732705 G A SLC39A3 3'UTR 0.32 TCGA-BF-A5EQ-01 19 2936597 2936597 G A ZNF77 Missense_Mutation p.S79F 0.41 deleterious(0.04) benign(0.059) TCGA-BF-A5EQ-01 19 35862349 35862349 C T GPR42 Missense_Mutation p.P30S 0.35 deleterious(0.03) probably_damaging(1) TCGA-BF-A5EQ-01 19 36297373 36297373 C T PRODH2 Missense_Mutation p.M396I 0.28 tolerated(0.06) benign(0.001) TCGA-BF-A5EQ-01 19 36341986 36341986 G A NPHS1 Missense_Mutation p.P135S 0.25 deleterious(0.02) possibly_damaging(0.78) TCGA-BF-A5EQ-01 19 39971456 39971456 G A TIMM50 Missense_Mutation p.R91K 0.44 tolerated_low_confidence(0.52) benign(0.006) TCGA-BF-A5EQ-01 19 40354296 40354296 C T FCGBP Silent p.A5391A 0.18 TCGA-BF-A5EQ-01 19 40902461 40902461 G C PRX Missense_Mutation p.L600V 0.39 deleterious(0.04) possibly_damaging(0.567) TCGA-BF-A5EQ-01 19 41600950 41600950 C T CYP2A13 Silent p.F416F 0.13 TCGA-BF-A5EQ-01 19 42907175 42907175 G A LIPE Missense_Mutation p.R851C 0.18 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 19 44792335 44792335 A C ZNF235 Missense_Mutation p.L418R 0.30 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 19 45868120 45868120 G A ERCC2 Silent p.C190C 0.19 TCGA-BF-A5EQ-01 19 46815496 46815496 C T HIF3A Silent p.S283S 0.35 TCGA-BF-A5EQ-01 19 47281944 47281944 C T SLC1A5 Missense_Mutation p.G349E 0.26 deleterious(0) probably_damaging(0.973) TCGA-BF-A5EQ-01 19 47281945 47281945 C T SLC1A5 Missense_Mutation p.G349R 0.26 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EQ-01 19 48523033 48523033 A T ELSPBP1 Missense_Mutation p.N138I 0.33 tolerated(0.1) benign(0.185) TCGA-BF-A5EQ-01 19 49116588 49116588 G A FAM83E Silent p.S14S 0.42 TCGA-BF-A5EQ-01 19 49116589 49116589 G A FAM83E Missense_Mutation p.S14F 0.40 tolerated(0.05) benign(0.332) TCGA-BF-A5EQ-01 19 50387813 50387813 C T TBC1D17 Silent p.L447L 0.30 TCGA-BF-A5EQ-01 19 507505 507505 A C TPGS1 5'UTR 0.67 TCGA-BF-A5EQ-01 19 50779290 50779290 C T MYH14 Silent p.S1170S 0.27 TCGA-BF-A5EQ-01 19 51192500 51192500 C T SHANK1 Silent p.Q667Q 0.27 TCGA-BF-A5EQ-01 19 51485640 51485640 G C KLK7 Missense_Mutation p.L6V 0.44 tolerated(0.32) unknown(0) TCGA-BF-A5EQ-01 19 51955867 51955867 C T SIGLEC8 Nonsense_Mutation p.W422* 0.28 TCGA-BF-A5EQ-01 19 53612586 53612586 G A ZNF415 Missense_Mutation p.H238Y 0.15 deleterious(0.02) possibly_damaging(0.873) TCGA-BF-A5EQ-01 19 54760194 54760194 C T LILRB5 Missense_Mutation p.E123K 0.39 tolerated(1) benign(0.001) TCGA-BF-A5EQ-01 19 55221954 55221954 G A AC098784.2 3'Flank 0.19 TCGA-BF-A5EQ-01 19 55222181 55222181 C T AC098784.2 3'Flank 0.35 TCGA-BF-A5EQ-01 19 55597236 55597236 G A EPS8L1 Silent p.E471E 0.38 TCGA-BF-A5EQ-01 19 56538995 56538995 G A NLRP5 Missense_Mutation p.D466N 0.32 tolerated(0.08) benign(0.232) TCGA-BF-A5EQ-01 19 56704146 56704146 G A ZSCAN5B Silent p.F92F 0.29 TCGA-BF-A5EQ-01 19 57649922 57649922 C T ZIM3 Silent p.G20G 0.18 TCGA-BF-A5EQ-01 19 58806071 58806071 C T ZNF8 Silent p.S299S 0.31 TCGA-BF-A5EQ-01 19 58983452 58983452 G A ZNF324 Silent p.A531A 0.05 TCGA-BF-A5EQ-01 19 5918540 5918540 G A RANBP3 Silent p.T480T 0.33 TCGA-BF-A5EQ-01 19 7606535 7606535 C T PNPLA6 Missense_Mutation p.P387L 0.33 tolerated(0.18) benign(0.007) TCGA-BF-A5EQ-01 19 8807842 8807842 C T ACTL9 Missense_Mutation p.E404K 0.39 tolerated(0.15) possibly_damaging(0.503) TCGA-BF-A5EQ-01 19 9063268 9063268 C T MUC16 Missense_Mutation p.D8060N 0.31 unknown(0) TCGA-BF-A5EQ-01 19 9067445 9067445 G A MUC16 Silent p.D6667D 0.33 TCGA-BF-A5EQ-01 19 9577332 9577332 C T ZNF560 Missense_Mutation p.G764E 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-BF-A5EQ-01 1 10690106 10690106 C T PEX14 3'UTR 0.56 TCGA-BF-A5EQ-01 1 11008498 11008498 C T C1orf127 Missense_Mutation p.G565D 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A5EQ-01 1 112524267 112524267 G A KCND3 Missense_Mutation p.T361I 0.37 tolerated(0.08) possibly_damaging(0.803) TCGA-BF-A5EQ-01 1 145608180 145608180 G A POLR3C Missense_Mutation p.P173S 0.26 tolerated(0.77) benign(0.02) TCGA-BF-A5EQ-01 1 147381226 147381226 G A GJA8 Missense_Mutation p.E382K 0.22 tolerated(0.43) benign(0.004) TCGA-BF-A5EQ-01 1 150531216 150531216 T C ADAMTSL4 Intron 0.37 TCGA-BF-A5EQ-01 1 150722617 150722617 G A CTSS Missense_Mutation p.R220C 0.47 tolerated(0.05) probably_damaging(0.962) TCGA-BF-A5EQ-01 1 156883785 156883785 G A PEAR1 Missense_Mutation p.G952E 0.34 tolerated(0.06) possibly_damaging(0.511) TCGA-BF-A5EQ-01 1 157514189 157514189 C T FCRL5 Missense_Mutation p.G236E 0.34 tolerated(1) benign(0.034) TCGA-BF-A5EQ-01 1 158450255 158450255 T A OR10R2 Missense_Mutation p.H196Q 0.03 deleterious(0.01) possibly_damaging(0.859) TCGA-BF-A5EQ-01 1 160784336 160784336 C T LY9 Missense_Mutation p.T286I 0.11 deleterious(0) probably_damaging(0.991) TCGA-BF-A5EQ-01 1 160789119 160789119 C T LY9 Missense_Mutation p.P485S 0.15 tolerated(0.19) possibly_damaging(0.695) TCGA-BF-A5EQ-01 1 167666459 167666459 G A RCSD1 Missense_Mutation p.E200K 0.14 deleterious(0.03) possibly_damaging(0.856) TCGA-BF-A5EQ-01 1 167805696 167805696 G A ADCY10 Missense_Mutation p.P1054S 0.13 tolerated(0.06) probably_damaging(0.96) TCGA-BF-A5EQ-01 1 169698418 169698418 G A SELE Silent p.F333F 0.43 TCGA-BF-A5EQ-01 1 175046766 175046766 C T TNN Missense_Mutation p.S71L 0.30 tolerated(0.09) benign(0.002) TCGA-BF-A5EQ-01 1 176762788 176762788 G A PAPPA2 Missense_Mutation p.E1705K 0.21 tolerated(0.59) benign(0.014) TCGA-BF-A5EQ-01 1 178442418 178442418 C T RASAL2 3'UTR 0.30 TCGA-BF-A5EQ-01 1 179562619 179562619 G A TDRD5 Missense_Mutation p.G86E 0.14 tolerated(0.06) benign(0.415) TCGA-BF-A5EQ-01 1 183514226 183514226 C T SMG7 Missense_Mutation p.P671S 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 1 197071976 197071976 A G ASPM Silent p.S2135S 0.34 TCGA-BF-A5EQ-01 1 197390130 197390130 G A CRB1 Missense_Mutation p.G391E 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 1 197397107 197397107 C T CRB1 Silent p.G884G 0.29 TCGA-BF-A5EQ-01 1 204438016 204438016 G A PIK3C2B Silent p.R305R 0.30 TCGA-BF-A5EQ-01 1 205548882 205548882 G A MFSD4 Silent p.L78L 0.11 TCGA-BF-A5EQ-01 1 207200996 207200996 G A C1orf116 5'UTR 0.40 TCGA-BF-A5EQ-01 1 218536727 218536727 C T TGFB2 Missense_Mutation p.S133F 0.12 deleterious(0.05) benign(0) TCGA-BF-A5EQ-01 1 220809193 220809193 C T MARK1 Missense_Mutation p.P432L 0.36 deleterious(0.02) benign(0.158) TCGA-BF-A5EQ-01 1 222716881 222716881 C T HHIPL2 Silent p.E324E 0.11 TCGA-BF-A5EQ-01 1 228479769 228479769 G A OBSCN Missense_Mutation p.E3933K 0.29 benign(0.022) TCGA-BF-A5EQ-01 1 231509749 231509749 G A EGLN1 Missense_Mutation p.L330F 0.24 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 1 233394323 233394323 G A PCNXL2 Missense_Mutation p.P429S 0.34 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-BF-A5EQ-01 1 237982396 237982396 G A RYR2 Missense_Mutation p.E4832K 0.43 possibly_damaging(0.881) TCGA-BF-A5EQ-01 1 244662343 244662343 C T C1orf101 Missense_Mutation p.P131S 0.24 tolerated(0.14) benign(0.269) TCGA-BF-A5EQ-01 1 247150781 247150781 G A ZNF695 Missense_Mutation p.H346Y 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A5EQ-01 1 247581995 247581995 C T NLRP3 5'UTR 0.20 TCGA-BF-A5EQ-01 1 247588705 247588705 G A NLRP3 Missense_Mutation p.E654K 0.23 tolerated(0.82) benign(0.284) TCGA-BF-A5EQ-01 1 247719744 247719744 G A GCSAML Missense_Mutation p.G22E 0.36 tolerated(0.69) benign(0.008) TCGA-BF-A5EQ-01 1 248737555 248737555 G A OR2T34 Silent p.T168T 0.22 TCGA-BF-A5EQ-01 1 249211534 249211534 C T PGBD2 Missense_Mutation p.R251W 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-BF-A5EQ-01 1 27277853 27277853 C T C1orf172 Missense_Mutation p.G340D 0.29 tolerated(0.64) benign(0.019) TCGA-BF-A5EQ-01 1 28564556 28564556 T C ATPIF1 3'UTR 0.53 TCGA-BF-A5EQ-01 1 33954745 33954745 C T ZSCAN20 Missense_Mutation p.P212L 0.27 deleterious(0.04) benign(0.079) TCGA-BF-A5EQ-01 1 34049299 34049299 G A CSMD2 Missense_Mutation p.L2397F 0.18 tolerated(0.23) benign(0.019) TCGA-BF-A5EQ-01 1 34276436 34276436 G A CSMD2 Missense_Mutation p.P412S 0.25 tolerated(0.12) probably_damaging(1) TCGA-BF-A5EQ-01 1 37291415 37291415 C T GRIK3 Missense_Mutation p.A515T 0.43 deleterious(0) probably_damaging(0.97) TCGA-BF-A5EQ-01 1 40092586 40092586 C G HEYL Missense_Mutation p.A194P 0.13 tolerated(0.17) benign(0.007) TCGA-BF-A5EQ-01 1 40236095 40236095 C T OXCT2 Missense_Mutation p.R278Q 0.25 tolerated(0.22) possibly_damaging(0.625) TCGA-BF-A5EQ-01 1 41304296 41304296 C T KCNQ4 3'UTR 0.21 TCGA-BF-A5EQ-01 1 42865134 42865134 C T RIMKLA Missense_Mutation p.P75S 0.52 tolerated(0.72) benign(0.008) TCGA-BF-A5EQ-01 1 45293673 45293673 C T PTCH2 Missense_Mutation p.E634K 0.33 tolerated(0.17) benign(0.017) TCGA-BF-A5EQ-01 1 46650978 46650978 G A TSPAN1 Missense_Mutation p.E226K 0.36 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EQ-01 1 53580680 53580680 G A SLC1A7 Intron 0.22 TCGA-BF-A5EQ-01 1 53715120 53715120 C A LRP8 Nonsense_Mutation p.E929* 0.40 TCGA-BF-A5EQ-01 1 57173385 57173385 G A PRKAA2 Silent p.%3D 0.31 TCGA-BF-A5EQ-01 1 57233610 57233610 G A C1orf168 Missense_Mutation p.L319F 0.10 deleterious(0.04) benign(0.063) TCGA-BF-A5EQ-01 1 57406584 57406584 C T C8B Missense_Mutation p.A446T 0.50 deleterious(0.05) benign(0.139) TCGA-BF-A5EQ-01 1 62728911 62728911 C T KANK4 Missense_Mutation p.V798M 0.22 deleterious(0) benign(0.041) TCGA-BF-A5EQ-01 1 76280818 76280818 C T MSH4 Missense_Mutation p.S271F 0.40 deleterious(0) probably_damaging(0.961) TCGA-BF-A5EQ-01 20 35857094 35857094 C T RPN2 Missense_Mutation p.L481F 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A5EQ-01 20 3891386 3891386 C T PANK2 Missense_Mutation p.P382S 0.38 tolerated(0.06) benign(0.337) TCGA-BF-A5EQ-01 20 40033984 40033984 G A CHD6 Missense_Mutation p.P2466L 0.41 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 20 43048456 43048456 G A HNF4A Missense_Mutation p.E278K 0.37 tolerated(0.06) possibly_damaging(0.706) TCGA-BF-A5EQ-01 20 43804559 43804559 C T PI3 Missense_Mutation p.P46L 0.06 tolerated(0.21) benign(0.016) TCGA-BF-A5EQ-01 20 43933204 43933204 C T MATN4 Missense_Mutation p.D103N 0.29 benign(0.001) TCGA-BF-A5EQ-01 20 44671958 44671958 C T SLC12A5 Silent p.V434V 0.40 TCGA-BF-A5EQ-01 20 45717935 45717935 G A EYA2 Missense_Mutation p.R240K 0.33 tolerated(0.1) probably_damaging(0.995) TCGA-BF-A5EQ-01 20 46262244 46262244 G A NCOA3 Silent p.K276K 0.40 TCGA-BF-A5EQ-01 20 47835882 47835882 G A DDX27 5'Flank 0.39 TCGA-BF-A5EQ-01 20 49626495 49626495 G A KCNG1 Silent p.I127I 0.19 TCGA-BF-A5EQ-01 20 57769747 57769747 C T ZNF831 Missense_Mutation p.P1225S 0.39 tolerated(0.12) benign(0.286) TCGA-BF-A5EQ-01 20 6093246 6093246 G A FERMT1 Missense_Mutation p.S137F 0.23 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EQ-01 20 61287908 61287908 C G SLCO4A1 Silent p.S34S 0.46 TCGA-BF-A5EQ-01 20 61542785 61542785 G A DIDO1 Silent p.S60S 0.41 TCGA-BF-A5EQ-01 20 62038034 62038034 G A KCNQ2 Missense_Mutation p.P861L 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.752) TCGA-BF-A5EQ-01 20 62038255 62038255 G A KCNQ2 Silent p.S787S 0.41 TCGA-BF-A5EQ-01 20 6759176 6759176 C A BMP2 Missense_Mutation p.P211T 0.46 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 20 6759677 6759677 G A BMP2 Missense_Mutation p.E378K 0.32 deleterious(0.02) possibly_damaging(0.887) TCGA-BF-A5EQ-01 21 30961171 30961171 T C GRIK1 Silent p.E519E 0.18 TCGA-BF-A5EQ-01 21 31045476 31045476 G A GRIK1 Missense_Mutation p.R185C 0.26 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 21 31744370 31744370 C T KRTAP13-2 Silent p.R54R 0.35 TCGA-BF-A5EQ-01 21 31802820 31802820 C T KRTAP13-4 Missense_Mutation p.P76L 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-BF-A5EQ-01 21 33371051 33371051 C T HUNK Missense_Mutation p.R567C 0.30 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-BF-A5EQ-01 21 35469240 35469240 C T SLC5A3 Silent p.T581T 0.29 TCGA-BF-A5EQ-01 21 45733536 45733536 C T PFKL Silent p.F203F 0.48 TCGA-BF-A5EQ-01 21 47805766 47805766 C T PCNT Missense_Mutation p.S1111F 0.37 possibly_damaging(0.831) TCGA-BF-A5EQ-01 22 18604259 18604259 C T TUBA8 Missense_Mutation p.S6L 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 22 19504138 19504138 C T CDC45 Missense_Mutation p.P542L 0.41 deleterious(0) possibly_damaging(0.491) TCGA-BF-A5EQ-01 22 23154558 23154558 G A IGLV3-10 Missense_Mutation p.G43R 0.12 deleterious(0.01) possibly_damaging(0.705) TCGA-BF-A5EQ-01 22 26239861 26239861 G A MYO18B Missense_Mutation p.R1123K 0.45 tolerated(0.72) benign(0.287) TCGA-BF-A5EQ-01 22 26688754 26688754 C T SEZ6L Silent p.S159S 0.17 TCGA-BF-A5EQ-01 22 26761387 26761387 C T SEZ6L Silent p.Y883Y 0.24 TCGA-BF-A5EQ-01 22 29885559 29885559 G A NEFH Missense_Mutation p.E644K 0.43 deleterious(0.04) possibly_damaging(0.486) TCGA-BF-A5EQ-01 22 31331242 31331242 G A MORC2 Missense_Mutation p.S540F 0.70 tolerated(0.28) benign(0.001) TCGA-BF-A5EQ-01 22 37771307 37771307 C T ELFN2 Missense_Mutation p.E90K 0.53 tolerated(0.12) probably_damaging(0.993) TCGA-BF-A5EQ-01 22 38823556 38823556 C T KCNJ4 Silent p.S194S 0.20 TCGA-BF-A5EQ-01 22 39883631 39883631 C T MGAT3 Silent p.L93L 0.25 TCGA-BF-A5EQ-01 22 41657540 41657540 G A RANGAP1 Silent p.A175A 0.04 TCGA-BF-A5EQ-01 22 41922166 41922166 C T POLR3H 3'UTR 0.11 TCGA-BF-A5EQ-01 22 42422929 42422929 G A WBP2NL Missense_Mutation p.G225E 0.15 tolerated(0.1) benign(0.006) TCGA-BF-A5EQ-01 22 42423254 42423254 G A WBP2NL 3'UTR 0.14 TCGA-BF-A5EQ-01 22 42475750 42475750 G T SMDT1 5'UTR 0.05 TCGA-BF-A5EQ-01 22 42956231 42956231 G T SERHL2 Silent p.G191G 0.03 TCGA-BF-A5EQ-01 22 45931079 45931079 G T FBLN1 Splice_Site p.X262_splice 0.24 TCGA-BF-A5EQ-01 22 46656046 46656046 G A PKDREJ Silent p.L1058L 0.36 TCGA-BF-A5EQ-01 22 51009660 51009660 C T CPT1B Missense_Mutation p.R601Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-BF-A5EQ-01 2 108477266 108477266 G A RGPD4 Silent p.G601G 0.31 TCGA-BF-A5EQ-01 2 113147112 113147112 G A RGPD8 Missense_Mutation p.S1137F 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 2 119732141 119732141 G A MARCO Missense_Mutation p.G205S 0.21 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EQ-01 2 130831721 130831721 A T POTEF 3'UTR 0.29 TCGA-BF-A5EQ-01 2 130833124 130833124 C T POTEF Missense_Mutation p.E641K 0.24 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-BF-A5EQ-01 2 131521549 131521549 C T AMER3 Missense_Mutation p.P635L 0.12 tolerated(0.2) benign(0.02) TCGA-BF-A5EQ-01 2 135694410 135694410 G A CCNT2 Splice_Site p.X81_splice 0.33 TCGA-BF-A5EQ-01 2 137814222 137814222 C T THSD7B Silent p.V124V 0.40 TCGA-BF-A5EQ-01 2 141093334 141093334 G A LRP1B Missense_Mutation p.S3989F 0.15 possibly_damaging(0.485) TCGA-BF-A5EQ-01 2 141812708 141812708 C T LRP1B Missense_Mutation p.G510E 0.14 probably_damaging(0.931) TCGA-BF-A5EQ-01 2 149247566 149247566 C T MBD5 Silent p.I1222I 0.10 TCGA-BF-A5EQ-01 2 149829872 149829872 A G KIF5C Silent p.E380E 0.45 TCGA-BF-A5EQ-01 2 155711644 155711644 C T KCNJ3 Missense_Mutation p.S442L 0.17 deleterious_low_confidence(0.01) benign(0.421) TCGA-BF-A5EQ-01 2 160843705 160843705 C T PLA2R1 Missense_Mutation p.D667N 0.42 tolerated(0.06) benign(0.06) TCGA-BF-A5EQ-01 2 160901443 160901443 G A PLA2R1 Missense_Mutation p.S112F 0.11 tolerated(0.08) benign(0.071) TCGA-BF-A5EQ-01 2 163072460 163072460 G A FAP Missense_Mutation p.P272S 0.38 tolerated(0.53) benign(0.085) TCGA-BF-A5EQ-01 2 168102298 168102298 G A XIRP2 Missense_Mutation p.G1466R 0.27 probably_damaging(0.991) TCGA-BF-A5EQ-01 2 168726612 168726612 G A B3GALT1 3'UTR 0.60 TCGA-BF-A5EQ-01 2 170493279 170493279 C T PPIG Missense_Mutation p.S504F 0.31 tolerated_low_confidence(0.16) unknown(0) TCGA-BF-A5EQ-01 2 177195314 177195314 C T MTX2 Silent p.V182V 0.28 TCGA-BF-A5EQ-01 2 179416689 179416689 G A TTN Missense_Mutation p.S30313L 0.13 TCGA-BF-A5EQ-01 2 186673448 186673448 C T FSIP2 Missense_Mutation p.S6561L 0.51 benign(0.179) TCGA-BF-A5EQ-01 2 187627388 187627388 G T FAM171B Missense_Mutation p.E773D 0.39 tolerated(0.33) benign(0.078) TCGA-BF-A5EQ-01 2 187698678 187698678 G A ZSWIM2 Missense_Mutation p.R275C 0.26 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 2 192701141 192701141 G A SDPR Silent p.I262I 0.35 TCGA-BF-A5EQ-01 2 196741396 196741396 C T DNAH7 Missense_Mutation p.E1997K 0.22 tolerated(0.11) benign(0.039) TCGA-BF-A5EQ-01 2 197080702 197080702 C T HECW2 Splice_Site p.X1499_splice 0.25 TCGA-BF-A5EQ-01 2 197122612 197122612 G A HECW2 Silent p.I1118I 0.43 TCGA-BF-A5EQ-01 2 203420956 203420956 C T BMPR2 Silent p.T856T 0.17 TCGA-BF-A5EQ-01 2 21234589 21234589 C T APOB Missense_Mutation p.M1717I 0.29 benign(0.355) TCGA-BF-A5EQ-01 2 21234887 21234887 G A APOB Missense_Mutation p.S1618L 0.35 benign(0.005) TCGA-BF-A5EQ-01 2 215896695 215896695 C T ABCA12 Intron 0.33 TCGA-BF-A5EQ-01 2 218669117 218669117 G A TNS1 3'UTR 0.13 TCGA-BF-A5EQ-01 2 218712777 218712777 G A TNS1 Silent p.F696F 0.26 TCGA-BF-A5EQ-01 2 219562282 219562282 C T STK36 Missense_Mutation p.S953F 0.15 tolerated(0.06) benign(0.439) TCGA-BF-A5EQ-01 2 228168582 228168582 G A COL4A3 Silent p.K1321K 0.30 TCGA-BF-A5EQ-01 2 234846064 234846064 G A TRPM8 Missense_Mutation p.E87K 0.23 tolerated(0.73) benign(0.16) TCGA-BF-A5EQ-01 2 238234251 238234251 C T COL6A3 Missense_Mutation p.E3149K 0.41 unknown(0) TCGA-BF-A5EQ-01 2 238727187 238727187 G A RBM44 Missense_Mutation p.G543E 0.36 tolerated(0.37) benign(0.045) TCGA-BF-A5EQ-01 2 240985307 240985307 G A OR6B3 Silent p.Y61Y 0.06 TCGA-BF-A5EQ-01 2 241463561 241463561 G A ANKMY1 Missense_Mutation p.P436S 0.26 tolerated(0.48) benign(0.004) TCGA-BF-A5EQ-01 2 241660412 241660412 G T KIF1A Missense_Mutation p.S1596Y 0.27 deleterious(0) possibly_damaging(0.667) TCGA-BF-A5EQ-01 2 242285635 242285635 C T SEPT2 Silent p.F299F 0.25 TCGA-BF-A5EQ-01 2 24952547 24952547 C G NCOA1 Missense_Mutation p.P1022A 0.39 tolerated(1) benign(0.162) TCGA-BF-A5EQ-01 2 27245162 27245162 G A MAPRE3 Missense_Mutation p.D26N 0.28 deleterious(0.02) possibly_damaging(0.452) TCGA-BF-A5EQ-01 2 27306476 27306476 G A EMILIN1 Silent p.G679G 0.37 TCGA-BF-A5EQ-01 2 27668295 27668295 G A IFT172 Nonsense_Mutation p.R1646* 0.16 TCGA-BF-A5EQ-01 2 27726415 27726415 C T GCKR Nonsense_Mutation p.R227* 0.14 TCGA-BF-A5EQ-01 2 30143027 30143027 G A ALK Nonsense_Mutation p.Q167* 0.15 TCGA-BF-A5EQ-01 2 31571214 31571214 G A XDH Missense_Mutation p.H1023Y 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-BF-A5EQ-01 2 33526684 33526684 G A LTBP1 Missense_Mutation p.A1152T 0.32 tolerated(0.62) possibly_damaging(0.507) TCGA-BF-A5EQ-01 2 40657008 40657008 G A SLC8A1 Missense_Mutation p.T138I 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 2 43808936 43808936 G A THADA Missense_Mutation p.P222L 0.33 tolerated(0.38) benign(0.003) TCGA-BF-A5EQ-01 2 69002248 69002248 C T ARHGAP25 Intron 0.37 TCGA-BF-A5EQ-01 2 71577257 71577257 C T ZNF638 Silent p.S391S 0.37 TCGA-BF-A5EQ-01 2 71653716 71653716 C T ZNF638 Missense_Mutation p.P1573S 0.36 tolerated(0.37) probably_damaging(0.999) TCGA-BF-A5EQ-01 2 80101302 80101302 G A CTNNA2 Missense_Mutation p.R229H 0.12 deleterious(0.03) possibly_damaging(0.742) TCGA-BF-A5EQ-01 2 87214034 87214034 G A RGPD1 Missense_Mutation p.E1330K 0.12 tolerated(0.06) benign(0.109) TCGA-BF-A5EQ-01 2 88828792 88828792 G A TEX37 Missense_Mutation p.D115N 0.18 tolerated_low_confidence(0.14) benign(0.004) TCGA-BF-A5EQ-01 2 88888279 88888279 G A EIF2AK3 Missense_Mutation p.H436Y 0.36 deleterious(0.01) benign(0.433) TCGA-BF-A5EQ-01 2 89999517 89999517 G A IGKV2D-28 Missense_Mutation p.D107N 0.23 deleterious(0.01) probably_damaging(0.922) TCGA-BF-A5EQ-01 2 90199027 90199027 G A IGKV1D-12 Missense_Mutation p.G63E 0.35 deleterious(0.01) benign(0.328) TCGA-BF-A5EQ-01 2 96072701 96072701 C T FAHD2A Silent p.A86A 0.27 TCGA-BF-A5EQ-01 2 96072702 96072702 C T FAHD2A Nonsense_Mutation p.Q87* 0.27 TCGA-BF-A5EQ-01 2 98994258 98994258 C T CNGA3 Silent p.I70I 0.20 TCGA-BF-A5EQ-01 2 99012752 99012752 G A CNGA3 Silent p.V373V 0.20 TCGA-BF-A5EQ-01 2 99169312 99169312 C T INPP4A Silent p.I414I 0.45 TCGA-BF-A5EQ-01 3 10392117 10392117 C T ATP2B2 Missense_Mutation p.E761K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BF-A5EQ-01 3 107096883 107096883 C T CCDC54 Missense_Mutation p.S150F 0.42 deleterious(0.04) benign(0.032) TCGA-BF-A5EQ-01 3 108475939 108475939 C T RETNLB Missense_Mutation p.D32N 0.30 tolerated(0.4) benign(0.138) TCGA-BF-A5EQ-01 3 108812287 108812287 C T MORC1 Missense_Mutation p.E229K 0.41 tolerated(0.1) possibly_damaging(0.848) TCGA-BF-A5EQ-01 3 113724787 113724787 C T KIAA1407 Nonsense_Mutation p.W479* 0.16 TCGA-BF-A5EQ-01 3 114070489 114070489 C G ZBTB20 Missense_Mutation p.V146L 0.12 deleterious(0) probably_damaging(0.935) TCGA-BF-A5EQ-01 3 121305209 121305209 C T ARGFX Missense_Mutation p.P237L 0.27 tolerated(0.07) possibly_damaging(0.72) TCGA-BF-A5EQ-01 3 124044942 124044942 A T KALRN Missense_Mutation p.K401M 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-BF-A5EQ-01 3 124802771 124802771 G A SLC12A8 Missense_Mutation p.S703F 0.18 tolerated(0.06) benign(0.177) TCGA-BF-A5EQ-01 3 124802773 124802773 G A SLC12A8 Silent p.S702S 0.22 TCGA-BF-A5EQ-01 3 127323764 127323764 C T MCM2 Silent p.R146R 0.21 TCGA-BF-A5EQ-01 3 129694683 129694683 C T TRH Silent p.L8L 0.27 TCGA-BF-A5EQ-01 3 133661546 133661546 G A SLCO2A1 Missense_Mutation p.P510S 0.36 tolerated(1) benign(0.003) TCGA-BF-A5EQ-01 3 134280237 134280237 C T CEP63 Missense_Mutation p.P658S 0.26 tolerated(0.41) possibly_damaging(0.55) TCGA-BF-A5EQ-01 3 139237343 139237343 C T RBP1 Missense_Mutation p.D154N 0.50 tolerated(0.16) possibly_damaging(0.465) TCGA-BF-A5EQ-01 3 148927001 148927001 A G CP Missense_Mutation p.Y260H 0.33 tolerated(1) benign(0.01) TCGA-BF-A5EQ-01 3 14964645 14964645 G A FGD5 Silent p.L1300L 0.41 TCGA-BF-A5EQ-01 3 15642975 15642975 C T HACL1 5'UTR 0.23 TCGA-BF-A5EQ-01 3 160968655 160968655 C T NMD3 Missense_Mutation p.S490F 0.21 deleterious(0.05) benign(0.392) TCGA-BF-A5EQ-01 3 161064020 161064020 C T SPTSSB Missense_Mutation p.R31Q 0.32 tolerated(0.69) benign(0.003) TCGA-BF-A5EQ-01 3 170102423 170102423 C T SKIL Silent p.S433S 0.20 TCGA-BF-A5EQ-01 3 186015882 186015882 C T DGKG Missense_Mutation p.G94E 0.37 tolerated(0.19) benign(0.012) TCGA-BF-A5EQ-01 3 188242550 188242550 C A LPP Missense_Mutation p.S135Y 0.13 deleterious(0.02) possibly_damaging(0.866) TCGA-BF-A5EQ-01 3 195698197 195698197 C T SDHAP1 RNA 0.17 TCGA-BF-A5EQ-01 3 196236500 196236500 C T SMCO1 Missense_Mutation p.E31K 0.45 tolerated(0.08) probably_damaging(0.994) TCGA-BF-A5EQ-01 3 36899254 36899254 C T TRANK1 Silent p.R609R 0.32 TCGA-BF-A5EQ-01 3 38153722 38153722 C T DLEC1 Missense_Mutation p.S1179F 0.34 deleterious(0) probably_damaging(0.952) TCGA-BF-A5EQ-01 3 38592961 38592961 G A SCN5A Silent p.L1634L 0.34 TCGA-BF-A5EQ-01 3 38768436 38768436 C T SCN10A Silent p.R916R 0.36 TCGA-BF-A5EQ-01 3 39225968 39225968 G A XIRP1 Missense_Mutation p.P1657S 0.36 deleterious(0) possibly_damaging(0.554) TCGA-BF-A5EQ-01 3 46399237 46399237 G A CCR2 Silent p.L73L 0.32 TCGA-BF-A5EQ-01 3 46904932 46904932 G A MYL3 5'UTR 0.45 TCGA-BF-A5EQ-01 3 4725386 4725386 C T ITPR1 Silent p.S1119S 0.17 TCGA-BF-A5EQ-01 3 48726058 48726058 T C IP6K2 Missense_Mutation p.K310R 0.37 tolerated(0.66) benign(0.034) TCGA-BF-A5EQ-01 3 48828002 48828002 A T PRKAR2A Missense_Mutation p.I137N 0.24 tolerated(0.05) probably_damaging(0.994) TCGA-BF-A5EQ-01 3 50112638 50112638 C T RBM6 Missense_Mutation p.R1041C 0.21 tolerated(0.1) possibly_damaging(0.582) TCGA-BF-A5EQ-01 3 50413426 50413426 C T CACNA2D2 Missense_Mutation p.D581N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 3 51431476 51431476 G A RBM15B Silent p.V882V 0.16 TCGA-BF-A5EQ-01 3 52292613 52292613 G A WDR82 Missense_Mutation p.P284L 0.31 deleterious(0.05) benign(0.103) TCGA-BF-A5EQ-01 3 52292614 52292614 G A WDR82 Missense_Mutation p.P284S 0.31 tolerated(0.07) possibly_damaging(0.457) TCGA-BF-A5EQ-01 3 52406053 52406053 C T DNAH1 Missense_Mutation p.T2206I 0.30 probably_damaging(0.942) TCGA-BF-A5EQ-01 3 52825903 52825903 T A ITIH1 Missense_Mutation p.D904E 0.16 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 3 58135710 58135710 C T FLNB Silent p.F2106F 0.36 TCGA-BF-A5EQ-01 3 67451240 67451240 G A SUCLG2 Silent p.I366I 0.31 TCGA-BF-A5EQ-01 3 73433833 73433833 G C PDZRN3 Silent p.A628A 0.07 TCGA-BF-A5EQ-01 3 7620266 7620266 T A GRM7 Missense_Mutation p.M558K 0.34 deleterious(0.01) benign(0.014) TCGA-BF-A5EQ-01 3 93780086 93780086 A T DHFRL1 Silent p.L90L 0.25 TCGA-BF-A5EQ-01 4 100232742 100232742 C T ADH1B Silent p.Q300Q 0.37 TCGA-BF-A5EQ-01 4 100266210 100266210 C T ADH1C Missense_Mutation p.D126N 0.32 possibly_damaging(0.834) TCGA-BF-A5EQ-01 4 100496107 100496107 C T MTTP Missense_Mutation p.S14L 0.30 deleterious(0.01) benign(0.002) TCGA-BF-A5EQ-01 4 106155754 106155754 G A TET2 Missense_Mutation p.E219K 0.18 deleterious(0.02) possibly_damaging(0.791) TCGA-BF-A5EQ-01 4 106157936 106157936 C T TET2 Missense_Mutation p.T946I 0.27 tolerated(1) benign(0) TCGA-BF-A5EQ-01 4 11401099 11401099 G A HS3ST1 Silent p.F177F 0.14 TCGA-BF-A5EQ-01 4 119461477 119461477 G A CEP170P1 RNA 0.29 TCGA-BF-A5EQ-01 4 119736203 119736203 G A SEC24D Missense_Mutation p.P261S 0.34 deleterious(0) probably_damaging(0.973) TCGA-BF-A5EQ-01 4 123255694 123255694 C T KIAA1109 Missense_Mutation p.P3948S 0.45 benign(0.391) TCGA-BF-A5EQ-01 4 138452913 138452913 C T PCDH18 Silent p.V110V 0.39 TCGA-BF-A5EQ-01 4 140468193 140468193 G C SETD7 Missense_Mutation p.D17E 0.27 tolerated(0.07) probably_damaging(0.974) TCGA-BF-A5EQ-01 4 147227162 147227162 C T SLC10A7 Splice_Site p.X158_splice 0.35 TCGA-BF-A5EQ-01 4 156643314 156643314 G A GUCY1A3 Missense_Mutation p.R614Q 0.20 tolerated(0.08) possibly_damaging(0.817) TCGA-BF-A5EQ-01 4 159493904 159493904 G A RXFP1 Missense_Mutation p.G35E 0.32 deleterious(0) probably_damaging(0.995) TCGA-BF-A5EQ-01 4 159560442 159560442 C T RXFP1 Silent p.I358I 0.24 TCGA-BF-A5EQ-01 4 162307144 162307144 G A FSTL5 Missense_Mutation p.L767F 0.39 deleterious(0) probably_damaging(0.986) TCGA-BF-A5EQ-01 4 1730378 1730378 C T TACC3 Missense_Mutation p.P417S 0.34 deleterious(0.05) benign(0.321) TCGA-BF-A5EQ-01 4 177073070 177073070 A T WDR17 Missense_Mutation p.R828S 0.45 deleterious(0.05) probably_damaging(0.992) TCGA-BF-A5EQ-01 4 183651370 183651370 G A TENM3 Missense_Mutation p.R868K 0.33 deleterious(0) benign(0.364) TCGA-BF-A5EQ-01 4 187172969 187172969 G A KLKB1 Silent p.G366G 0.32 TCGA-BF-A5EQ-01 4 22422355 22422355 C T GPR125 Intron 0.21 TCGA-BF-A5EQ-01 4 2901108 2901108 G - ADD1 Frame_Shift_Del p.K369Nfs*32 0.19 TCGA-BF-A5EQ-01 4 38117330 38117330 G A TBC1D1 Splice_Site p.X853_splice 0.28 TCGA-BF-A5EQ-01 4 40337903 40337903 T C CHRNA9 Missense_Mutation p.Y42H 0.15 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 4 42446602 42446602 C T ATP8A1 Nonsense_Mutation p.W1003* 0.37 TCGA-BF-A5EQ-01 4 46060509 46060509 C T GABRG1 Silent p.T252T 0.31 TCGA-BF-A5EQ-01 4 47602344 47602344 C T CORIN Missense_Mutation p.G945R 0.38 deleterious(0.04) probably_damaging(1) TCGA-BF-A5EQ-01 4 48081953 48081953 C T TXK Silent p.R383R 0.32 TCGA-BF-A5EQ-01 4 48143406 48143406 C T TEC Missense_Mutation p.G501R 0.14 tolerated(0.35) probably_damaging(0.933) TCGA-BF-A5EQ-01 4 60034 60034 G A ZNF595 Missense_Mutation p.A72T 0.08 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-BF-A5EQ-01 4 69100279 69100279 C T TMPRSS11B Missense_Mutation p.G124E 0.28 tolerated(0.22) benign(0) TCGA-BF-A5EQ-01 4 70066094 70066094 C T UGT2B11 3'UTR 0.48 TCGA-BF-A5EQ-01 4 70146570 70146570 G A UGT2B28 Missense_Mutation p.E118K 0.29 tolerated(0.44) benign(0.002) TCGA-BF-A5EQ-01 4 70505136 70505136 C T UGT2A2 Missense_Mutation p.D75N 0.13 tolerated(0.28) benign(0.001) TCGA-BF-A5EQ-01 4 72649816 72649816 C T GC Intron 0.44 TCGA-BF-A5EQ-01 4 76447128 76447128 C T THAP6 Intron 0.30 TCGA-BF-A5EQ-01 4 78873669 78873669 C T MRPL1 Missense_Mutation p.R296C 0.22 tolerated(0.2) benign(0.055) TCGA-BF-A5EQ-01 4 8010816 8010816 C T ABLIM2 Silent p.S479S 0.40 TCGA-BF-A5EQ-01 5 112770472 112770472 G A TSSK1B Missense_Mutation p.S22F 0.26 deleterious(0) possibly_damaging(0.908) TCGA-BF-A5EQ-01 5 1217003 1217003 C T SLC6A19 Silent p.P372P 0.19 TCGA-BF-A5EQ-01 5 137426989 137426989 C T WNT8A 3'UTR 0.07 TCGA-BF-A5EQ-01 5 137488311 137488311 C T BRD8 Missense_Mutation p.D906N 0.03 deleterious_low_confidence(0.01) benign(0.014) TCGA-BF-A5EQ-01 5 13885101 13885101 G A DNAH5 Missense_Mutation p.R994W 0.32 benign(0.025) TCGA-BF-A5EQ-01 5 140201380 140201380 G A PCDHA5 Missense_Mutation p.G7E 0.24 tolerated_low_confidence(0.19) benign(0.037) TCGA-BF-A5EQ-01 5 140262045 140262045 C T PCDHA13 Silent p.F64F 0.49 TCGA-BF-A5EQ-01 5 140572572 140572572 G A PCDHB10 Silent p.G149G 0.45 TCGA-BF-A5EQ-01 5 1443231 1443231 C A SLC6A3 Nonsense_Mutation p.E28* 0.27 TCGA-BF-A5EQ-01 5 153026682 153026682 C T GRIA1 Missense_Mutation p.H149Y 0.53 tolerated(0.5) benign(0.004) TCGA-BF-A5EQ-01 5 154394579 154394579 C T KIF4B Missense_Mutation p.S387F 0.51 deleterious(0) possibly_damaging(0.806) TCGA-BF-A5EQ-01 5 168233477 168233477 G T SLIT3 Silent p.A303A 0.07 TCGA-BF-A5EQ-01 5 176018433 176018433 A C CDHR2 Missense_Mutation p.K1228Q 0.04 tolerated(0.23) benign(0.01) TCGA-BF-A5EQ-01 5 176072467 176072467 C T EIF4E1B Silent p.I188I 0.08 TCGA-BF-A5EQ-01 5 179296772 179296772 G A TBC1D9B Missense_Mutation p.P930S 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-BF-A5EQ-01 5 22078774 22078774 C T CDH12 Silent p.R4R 0.11 TCGA-BF-A5EQ-01 5 32072297 32072297 C T PDZD2 Nonsense_Mutation p.Q867* 0.21 TCGA-BF-A5EQ-01 5 32239170 32239170 C T MTMR12 Nonsense_Mutation p.W427* 0.41 TCGA-BF-A5EQ-01 5 35991267 35991267 G A UGT3A1 Silent p.L26L 0.38 TCGA-BF-A5EQ-01 5 37157832 37157832 A G C5orf42 Silent p.L2633L 0.12 TCGA-BF-A5EQ-01 5 38451522 38451522 C T EGFLAM Silent p.F891F 0.05 TCGA-BF-A5EQ-01 5 38530743 38530743 C T LIFR Missense_Mutation p.D3N 0.35 tolerated_low_confidence(0.15) benign(0.002) TCGA-BF-A5EQ-01 5 39341762 39341762 C T C9 Missense_Mutation p.G75E 0.16 deleterious(0) probably_damaging(0.996) TCGA-BF-A5EQ-01 5 45262407 45262407 C T HCN1 Silent p.P763P 0.22 TCGA-BF-A5EQ-01 5 45645563 45645563 G A HCN1 Silent p.I191I 0.38 TCGA-BF-A5EQ-01 5 64447604 64447604 C T ADAMTS6 3'UTR 0.29 TCGA-BF-A5EQ-01 5 64595916 64595916 C T ADAMTS6 Silent p.T422T 0.16 TCGA-BF-A5EQ-01 5 64946640 64946640 G A TRAPPC13 Silent p.L144L 0.31 TCGA-BF-A5EQ-01 5 65088297 65088297 C T NLN Missense_Mutation p.H448Y 0.55 deleterious(0.02) probably_damaging(0.936) TCGA-BF-A5EQ-01 5 73128179 73128179 C T ARHGEF28 Silent p.I347I 0.53 TCGA-BF-A5EQ-01 5 78417063 78417063 C T BHMT Missense_Mutation p.A167V 0.26 tolerated(0.05) benign(0.175) TCGA-BF-A5EQ-01 5 79030010 79030010 G A CMYA5 Missense_Mutation p.E1808K 0.61 benign(0.003) TCGA-BF-A5EQ-01 5 80409515 80409515 C T RASGRF2 Missense_Mutation p.S749F 0.73 deleterious_low_confidence(0.03) probably_damaging(0.954) TCGA-BF-A5EQ-01 5 93076823 93076823 G A POU5F2 Silent p.I149I 0.50 TCGA-BF-A5EQ-01 5 94248558 94248558 C T MCTP1 Missense_Mutation p.D492N 0.21 deleterious(0) probably_damaging(0.997) TCGA-BF-A5EQ-01 6 100957164 100957164 G A ASCC3 3'UTR 0.42 TCGA-BF-A5EQ-01 6 105609884 105609884 C T POPDC3 5'UTR 0.27 TCGA-BF-A5EQ-01 6 111901496 111901496 G A TRAF3IP2 Missense_Mutation p.P309L 0.20 deleterious(0.01) benign(0.242) TCGA-BF-A5EQ-01 6 116757505 116757505 G A DSE Missense_Mutation p.S625N 0.38 deleterious(0) probably_damaging(0.994) TCGA-BF-A5EQ-01 6 119501481 119501481 A T MAN1A1 Missense_Mutation p.L611M 0.45 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 6 130460862 130460862 C T L3MBTL3 Silent p.F769F 0.11 TCGA-BF-A5EQ-01 6 133014436 133014436 C T VNN1 Missense_Mutation p.E185K 0.35 deleterious(0.02) probably_damaging(1) TCGA-BF-A5EQ-01 6 135265085 135265085 G A ALDH8A1 Missense_Mutation p.A53V 0.44 deleterious(0) probably_damaging(0.99) TCGA-BF-A5EQ-01 6 136681016 136681016 C T MAP7 Splice_Site p.X641_splice 0.29 TCGA-BF-A5EQ-01 6 136709565 136709565 G A MAP7 Silent p.G186G 0.33 TCGA-BF-A5EQ-01 6 139094843 139094843 G A CCDC28A Missense_Mutation p.G11E 0.25 tolerated_low_confidence(0.08) benign(0) TCGA-BF-A5EQ-01 6 139262604 139262604 C T REPS1 Missense_Mutation p.D335N 0.18 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 6 146254267 146254267 C T SHPRH Missense_Mutation p.G1013E 0.32 tolerated(0.53) benign(0.028) TCGA-BF-A5EQ-01 6 148854073 148854073 C T SASH1 Missense_Mutation p.P569S 0.15 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 6 151152818 151152818 C T PLEKHG1 Silent p.L857L 0.22 TCGA-BF-A5EQ-01 6 155532400 155532400 G A TIAM2 Missense_Mutation p.D1043N 0.40 tolerated(0.09) benign(0.019) TCGA-BF-A5EQ-01 6 160328083 160328083 C T MAS1 Silent p.I32I 0.35 TCGA-BF-A5EQ-01 6 160328409 160328409 G A MAS1 Missense_Mutation p.R141Q 0.35 tolerated(0.54) possibly_damaging(0.74) TCGA-BF-A5EQ-01 6 160668235 160668235 G T SLC22A2 Missense_Mutation p.S313Y 0.30 tolerated(1) benign(0.021) TCGA-BF-A5EQ-01 6 161027662 161027662 G A LPA Missense_Mutation p.P878S 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-BF-A5EQ-01 6 165715388 165715388 A G C6orf118 Silent p.T141T 0.39 TCGA-BF-A5EQ-01 6 167754081 167754081 C T TTLL2 Silent p.F231F 0.21 TCGA-BF-A5EQ-01 6 168352422 168352422 C T MLLT4 Missense_Mutation p.P1456L 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.568) TCGA-BF-A5EQ-01 6 170160048 170160048 C T ERMARD Silent p.L240L 0.21 TCGA-BF-A5EQ-01 6 26156731 26156731 C T HIST1H1E Missense_Mutation p.P38L 0.21 tolerated(0.53) probably_damaging(1) TCGA-BF-A5EQ-01 6 26157303 26157303 G A HIST1H1E 3'UTR 0.29 TCGA-BF-A5EQ-01 6 26465589 26465589 C T BTN2A1 Silent p.L297L 0.22 TCGA-BF-A5EQ-01 6 28540549 28540549 G A SCAND3 Silent p.F1039F 0.07 TCGA-BF-A5EQ-01 6 28542517 28542517 C T SCAND3 Silent p.R655R 0.44 TCGA-BF-A5EQ-01 6 2890745 2890745 C T SERPINB9 Silent p.K261K 0.43 TCGA-BF-A5EQ-01 6 29012878 29012878 C T OR2W1 Missense_Mutation p.M25I 0.11 tolerated(0.44) benign(0.002) TCGA-BF-A5EQ-01 6 29342985 29342985 C T OR12D3 Missense_Mutation p.G27E 0.30 deleterious(0.03) benign(0.078) TCGA-BF-A5EQ-01 6 2948536 2948536 G A SERPINB6 Missense_Mutation p.P376L 0.42 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 6 2948537 2948537 G A SERPINB6 Missense_Mutation p.P376S 0.42 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 6 31974673 31974673 G A AL645922.1 Intron 0.27 TCGA-BF-A5EQ-01 6 31997559 31997559 G A C4B Missense_Mutation p.G1298E 0.17 deleterious(0) probably_damaging(0.994) TCGA-BF-A5EQ-01 6 32372984 32372984 G A BTNL2 Silent p.L53L 0.45 TCGA-BF-A5EQ-01 6 33422837 33422837 C T ZBTB9 5'UTR 0.42 TCGA-BF-A5EQ-01 6 33744925 33744925 C T LEMD2 Silent p.K416K 0.24 TCGA-BF-A5EQ-01 6 39874463 39874463 G A MOCS1 3'UTR 0.26 TCGA-BF-A5EQ-01 6 42224816 42224816 G A TRERF1 Silent p.F787F 0.31 TCGA-BF-A5EQ-01 6 42227313 42227313 G A TRERF1 Missense_Mutation p.S678L 0.16 deleterious(0.04) benign(0.32) TCGA-BF-A5EQ-01 6 42237219 42237219 C T TRERF1 Missense_Mutation p.G37E 0.31 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BF-A5EQ-01 6 43739022 43739022 C T VEGFA Silent p.A193A 0.57 TCGA-BF-A5EQ-01 6 43748520 43748520 C T VEGFA Silent p.S338S 0.18 TCGA-BF-A5EQ-01 6 47680210 47680210 C T GPR115 Missense_Mutation p.P140S 0.13 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 6 49754627 49754627 C T PGK2 Missense_Mutation p.D92N 0.49 tolerated(0.26) benign(0.003) TCGA-BF-A5EQ-01 6 54806400 54806400 C T FAM83B Silent p.F877F 0.43 TCGA-BF-A5EQ-01 6 7580516 7580516 C T DSP Nonsense_Mutation p.Q1365* 0.50 TCGA-BF-A5EQ-01 6 7585638 7585638 G A DSP Missense_Mutation p.E2715K 0.23 probably_damaging(0.959) TCGA-BF-A5EQ-01 6 76022285 76022285 G A FILIP1 Missense_Mutation p.P1088L 0.40 deleterious(0) probably_damaging(0.981) TCGA-BF-A5EQ-01 6 79707983 79707983 G A PHIP Missense_Mutation p.R669C 0.13 deleterious(0.01) benign(0.432) TCGA-BF-A5EQ-01 6 84055943 84055943 C T ME1 Missense_Mutation p.M183I 0.11 tolerated(0.99) benign(0.002) TCGA-BF-A5EQ-01 6 84290301 84290301 C T SNAP91 Missense_Mutation p.D723N 0.37 tolerated(0.06) probably_damaging(0.987) TCGA-BF-A5EQ-01 6 99797129 99797129 C T FAXC Silent p.G40G 0.40 TCGA-BF-A5EQ-01 7 100682549 100682549 G T MUC17 Missense_Mutation p.A2618S 0.25 benign(0.219) TCGA-BF-A5EQ-01 7 100686190 100686190 G A MUC17 Silent p.E3831E 0.24 TCGA-BF-A5EQ-01 7 102100168 102100168 G T ALKBH4 Missense_Mutation p.F68L 0.09 tolerated(0.24) benign(0.008) TCGA-BF-A5EQ-01 7 103207112 103207112 G A RELN Silent p.S1561S 0.52 TCGA-BF-A5EQ-01 7 107580750 107580750 C T LAMB1 Missense_Mutation p.G1149S 0.55 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 7 112102354 112102354 C T IFRD1 Missense_Mutation p.S276F 0.38 tolerated(0.06) probably_damaging(0.966) TCGA-BF-A5EQ-01 7 115624483 115624483 G A TFEC Missense_Mutation p.H5Y 0.08 tolerated_low_confidence(0.23) benign(0.001) TCGA-BF-A5EQ-01 7 11676141 11676141 C T THSD7A Missense_Mutation p.G213E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A5EQ-01 7 123097545 123097545 C T IQUB Missense_Mutation p.D695N 0.19 tolerated(0.08) benign(0.176) TCGA-BF-A5EQ-01 7 127255585 127255585 C T PAX4 5'UTR 0.55 TCGA-BF-A5EQ-01 7 127894505 127894505 G A LEP Missense_Mutation p.G65R 0.20 tolerated(0.14) possibly_damaging(0.61) TCGA-BF-A5EQ-01 7 128452053 128452053 C T CCDC136 Missense_Mutation p.S743F 0.27 deleterious_low_confidence(0.04) benign(0.066) TCGA-BF-A5EQ-01 7 128478361 128478361 C T FLNC Missense_Mutation p.P363L 0.20 deleterious(0) probably_damaging(1) TCGA-BF-A5EQ-01 7 128495294 128495294 C T FLNC Missense_Mutation p.P2393S 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A5EQ-01 7 130135278 130135278 A G MEST Silent p.P32P 0.30 TCGA-BF-A5EQ-01 7 134896313 134896313 G A WDR91 5'Flank 0.54 TCGA-BF-A5EQ-01 7 140266997 140266997 G A DENND2A Silent p.L556L 0.17 TCGA-BF-A5EQ-01 7 140386854 140386854 A T ADCK2 Missense_Mutation p.N457I 0.47 tolerated(0.09) benign(0.017) TCGA-BF-A5EQ-01 7 140386855 140386855 C T ADCK2 Silent p.N457N 0.49 TCGA-BF-A5EQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-BF-A5EQ-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.39 deleterious(0) possibly_damaging(0.838) TCGA-BF-A5EQ-01 7 141672824 141672824 C T TAS2R38 Silent p.R222R 0.13 TCGA-BF-A5EQ-01 7 141736050 141736050 C T MGAM Missense_Mutation p.P681S 0.19 deleterious(0) probably_damaging(0.937) TCGA-BF-A5EQ-01 7 141736051 141736051 C T MGAM Missense_Mutation p.P681L 0.19 deleterious(0) probably_damaging(0.992) TCGA-BF-A5EQ-01 7 142099611 142099611 A C TRBV7-8 Missense_Mutation p.F64C 0.48 deleterious(0) probably_damaging(0.958) TCGA-BF-A5EQ-01 7 142120318 142120318 C T TRBV7-7 Missense_Mutation p.G2S 0.25 tolerated(0.06) benign(0.099) TCGA-BF-A5EQ-01 7 142637553 142637553 T C C7orf34 Missense_Mutation p.V108A 0.03 tolerated(0.11) benign(0.013) TCGA-BF-A5EQ-01 7 142641808 142641808 C T KEL Silent p.A445A 0.09 TCGA-BF-A5EQ-01 7 142651410 142651410 C T KEL Missense_Mutation p.G262E 0.34 deleterious(0.02) probably_damaging(0.943) TCGA-BF-A5EQ-01 7 144015523 144015523 C T OR2A1 Silent p.L102L 0.05 TCGA-BF-A5EQ-01 7 147844654 147844654 C T CNTNAP2 Missense_Mutation p.P876S 0.53 tolerated(0.1) benign(0.334) TCGA-BF-A5EQ-01 7 148080748 148080748 G A CNTNAP2 Silent p.G1161G 0.32 TCGA-BF-A5EQ-01 7 149482603 149482603 G A SSPO RNA 0.65 TCGA-BF-A5EQ-01 7 149557878 149557878 C T ZNF862 Silent p.L543L 0.09 TCGA-BF-A5EQ-01 7 150439539 150439539 C T GIMAP5 Silent p.Y104Y 0.45 TCGA-BF-A5EQ-01 7 150439540 150439540 C T GIMAP5 Silent p.L105L 0.45 TCGA-BF-A5EQ-01 7 150703561 150703561 C T NOS3 Missense_Mutation p.S600F 0.14 tolerated(0.06) benign(0.26) TCGA-BF-A5EQ-01 7 1532654 1532654 G A INTS1 Silent p.L719L 0.29 TCGA-BF-A5EQ-01 7 156802446 156802446 G A MNX1 Missense_Mutation p.P200L 0.54 deleterious(0) possibly_damaging(0.621) TCGA-BF-A5EQ-01 7 18668982 18668982 C T HDAC9 Missense_Mutation p.P225L 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-A5EQ-01 7 22259580 22259580 C T RAPGEF5 Missense_Mutation p.D148N 0.34 deleterious(0) possibly_damaging(0.628) TCGA-BF-A5EQ-01 7 23810687 23810687 C T STK31 Missense_Mutation p.H593Y 0.36 tolerated(0.69) benign(0.003) TCGA-BF-A5EQ-01 7 34094912 34094912 C T BMPER Silent p.F308F 0.14 TCGA-BF-A5EQ-01 7 34192975 34192975 G A BMPER 3'UTR 0.50 TCGA-BF-A5EQ-01 7 44838999 44838999 C T PPIA Missense_Mutation p.R37C 0.23 tolerated_low_confidence(0.14) benign(0.01) TCGA-BF-A5EQ-01 7 48318664 48318664 A T ABCA13 Missense_Mutation p.M2625L 0.24 benign(0.001) TCGA-BF-A5EQ-01 7 64389480 64389480 C T ZNF273 3'UTR 0.44 TCGA-BF-A5EQ-01 7 82579419 82579419 C T PCLO Silent p.G3495G 0.58 TCGA-BF-A5EQ-01 7 82582084 82582084 C T PCLO Missense_Mutation p.D2729N 0.41 unknown(0) TCGA-BF-A5EQ-01 7 82763878 82763878 C T PCLO Silent p.V996V 0.15 TCGA-BF-A5EQ-01 7 87772372 87772372 A C ADAM22 Missense_Mutation p.N418H 0.25 deleterious(0) possibly_damaging(0.908) TCGA-BF-A5EQ-01 7 97482409 97482409 G A ASNS Missense_Mutation p.S480F 0.58 deleterious(0) benign(0.175) TCGA-BF-A5EQ-01 7 99367835 99367835 C T CYP3A4 Missense_Mutation p.M114I 0.16 deleterious(0.02) possibly_damaging(0.742) TCGA-BF-A5EQ-01 7 99697345 99697345 A G MCM7 Missense_Mutation p.L48P 0.24 deleterious(0) possibly_damaging(0.823) TCGA-BF-A5EQ-01 8 101011649 101011649 C T RGS22 Splice_Site p.X931_splice 0.19 TCGA-BF-A5EQ-01 8 101232520 101232520 C T SPAG1 Missense_Mutation p.H517Y 0.35 deleterious(0) possibly_damaging(0.79) TCGA-BF-A5EQ-01 8 101612647 101612647 C T SNX31 Missense_Mutation p.G235E 0.34 tolerated(1) benign(0.001) TCGA-BF-A5EQ-01 8 108334142 108334142 G A ANGPT1 Missense_Mutation p.L264F 0.15 tolerated(0.08) benign(0.007) TCGA-BF-A5EQ-01 8 113599321 113599321 G A CSMD3 Missense_Mutation p.H1287Y 0.33 deleterious(0) possibly_damaging(0.777) TCGA-BF-A5EQ-01 8 121383515 121383515 G A COL14A1 3'UTR 0.15 TCGA-BF-A5EQ-01 8 13356975 13356975 T C DLC1 Missense_Mutation p.I202M 0.33 tolerated_low_confidence(0.05) benign(0.182) TCGA-BF-A5EQ-01 8 133595982 133595982 C T LRRC6 Missense_Mutation p.M395I 0.33 tolerated(0.49) benign(0) TCGA-BF-A5EQ-01 8 135622837 135622837 C T ZFAT Silent p.S170S 0.05 TCGA-BF-A5EQ-01 8 139703086 139703086 G A COL22A1 Missense_Mutation p.P929L 0.38 unknown(0) TCGA-BF-A5EQ-01 8 143994858 143994858 G A CYP11B2 Missense_Mutation p.P322S 0.17 tolerated(0.11) possibly_damaging(0.764) TCGA-BF-A5EQ-01 8 2048778 2048778 C T MYOM2 Silent p.F851F 0.35 TCGA-BF-A5EQ-01 8 21608287 21608287 C T GFRA2 Missense_Mutation p.A203T 0.13 deleterious(0) possibly_damaging(0.903) TCGA-BF-A5EQ-01 8 21973894 21973894 G A HR Silent p.S1142S 0.44 TCGA-BF-A5EQ-01 8 26721946 26721946 C T ADRA1A Missense_Mutation p.E181K 0.28 deleterious(0) possibly_damaging(0.861) TCGA-BF-A5EQ-01 8 27321460 27321460 G A CHRNA2 Missense_Mutation p.S167F 0.30 tolerated(0.26) benign(0.02) TCGA-BF-A5EQ-01 8 2886862 2886862 C T CSMD1 Missense_Mutation p.D2612N 0.32 benign(0.004) TCGA-BF-A5EQ-01 8 3224759 3224759 C T CSMD1 Missense_Mutation p.M970I 0.33 benign(0.025) TCGA-BF-A5EQ-01 8 36793129 36793129 T C KCNU1 Silent p.N1047N 0.40 TCGA-BF-A5EQ-01 8 39044448 39044448 G A ADAM32 Silent p.L312L 0.24 TCGA-BF-A5EQ-01 8 41581128 41581128 G A ANK1 Silent p.I278I 0.38 TCGA-BF-A5EQ-01 8 52321427 52321427 G A PXDNL Silent p.L919L 0.23 TCGA-BF-A5EQ-01 8 55534686 55534686 C A RP1 Missense_Mutation p.L209I 0.10 deleterious(0.02) possibly_damaging(0.764) TCGA-BF-A5EQ-01 8 55540465 55540465 C T RP1 Silent p.T1341T 0.19 TCGA-BF-A5EQ-01 8 59404997 59404997 C G CYP7A1 Missense_Mutation p.G377A 0.31 tolerated(0.38) benign(0.049) TCGA-BF-A5EQ-01 8 66989016 66989016 G A DNAJC5B Missense_Mutation p.D81N 0.27 deleterious(0.03) probably_damaging(0.991) TCGA-BF-A5EQ-01 8 69434069 69434069 C T C8orf34 Silent p.P267P 0.34 TCGA-BF-A5EQ-01 8 71646537 71646537 C T XKR9 Missense_Mutation p.L334F 0.28 tolerated(0.06) benign(0.006) TCGA-BF-A5EQ-01 8 71646647 71646647 C T XKR9 Silent p.F370F 0.35 TCGA-BF-A5EQ-01 8 73849580 73849580 G A KCNB2 Missense_Mutation p.D664N 0.20 tolerated_low_confidence(0.08) benign(0.09) TCGA-BF-A5EQ-01 8 74585419 74585419 G A STAU2 Silent p.A111A 0.30 TCGA-BF-A5EQ-01 8 77766120 77766120 C T ZFHX4 Silent p.F2321F 0.36 TCGA-BF-A5EQ-01 8 77895944 77895944 G A PEX2 Silent p.F157F 0.29 TCGA-BF-A5EQ-01 9 104124864 104124864 T C BAAT Missense_Mutation p.Y368C 0.46 tolerated(0.06) possibly_damaging(0.464) TCGA-BF-A5EQ-01 9 104432549 104432549 G A GRIN3A Silent p.S715S 0.11 TCGA-BF-A5EQ-01 9 111903728 111903728 C T FRRS1L Missense_Mutation p.V253I 0.16 tolerated(0.66) benign(0.117) TCGA-BF-A5EQ-01 9 117552724 117552724 C T TNFSF15 3'UTR 0.35 TCGA-BF-A5EQ-01 9 119943362 119943362 C T ASTN2 Intron 0.11 TCGA-BF-A5EQ-01 9 121930123 121930123 C T BRINP1 Missense_Mutation p.E509K 0.39 deleterious(0) possibly_damaging(0.905) TCGA-BF-A5EQ-01 9 125288700 125288700 C T OR1N1 Silent p.R291R 0.17 TCGA-BF-A5EQ-01 9 125289062 125289062 C T OR1N1 Missense_Mutation p.E171K 0.30 tolerated(0.84) probably_damaging(0.998) TCGA-BF-A5EQ-01 9 130941272 130941272 G A CIZ1 Missense_Mutation p.P405L 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.713) TCGA-BF-A5EQ-01 9 133759902 133759902 C T ABL1 Missense_Mutation p.S761F 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BF-A5EQ-01 9 133759903 133759903 C T ABL1 Silent p.S761S 0.26 TCGA-BF-A5EQ-01 9 136031416 136031416 G A GBGT1 Silent p.L58L 0.30 TCGA-BF-A5EQ-01 9 137622106 137622106 G A COL5A1 Missense_Mutation p.A317T 0.35 benign(0.093) TCGA-BF-A5EQ-01 9 138657008 138657008 C T KCNT1 Silent p.F389F 0.16 TCGA-BF-A5EQ-01 9 140245817 140245817 G A EXD3 Missense_Mutation p.S446F 0.30 tolerated(0.71) benign(0.086) TCGA-BF-A5EQ-01 9 141016188 141016188 C T CACNA1B Nonsense_Mutation p.R2253* 0.28 TCGA-BF-A5EQ-01 9 14823185 14823185 G A FREM1 Silent p.I770I 0.20 TCGA-BF-A5EQ-01 9 21141427 21141427 G A IFNW1 Missense_Mutation p.S48F 0.37 deleterious(0.03) possibly_damaging(0.872) TCGA-BF-A5EQ-01 9 27228299 27228299 G A TEK Missense_Mutation p.R1099Q 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-BF-A5EQ-01 9 3330465 3330465 C A RFX3 Nonsense_Mutation p.G90* 0.41 TCGA-BF-A5EQ-01 9 33469570 33469570 G A NOL6 Silent p.P218P 0.17 TCGA-BF-A5EQ-01 9 33469571 33469571 G A NOL6 Missense_Mutation p.P218L 0.17 tolerated(0.11) benign(0.102) TCGA-BF-A5EQ-01 9 35724284 35724284 C T TLN1 Missense_Mutation p.E187K 0.26 deleterious(0.01) benign(0.223) TCGA-BF-A5EQ-01 9 39103760 39103760 G A CNTNAP3 Silent p.F839F 0.29 TCGA-BF-A5EQ-01 9 40702917 40702917 C T SPATA31A3 Missense_Mutation p.P192S 0.21 tolerated(0.17) benign(0.047) TCGA-BF-A5EQ-01 9 4834165 4834165 G A RCL1 Missense_Mutation p.G162R 0.17 tolerated(0.52) benign(0.289) TCGA-BF-A5EQ-01 9 77425737 77425737 C T TRPM6 Silent p.V497V 0.45 TCGA-BF-A5EQ-01 9 8317786 8317786 G A PTPRD 3'UTR 0.32 TCGA-BF-A5EQ-01 9 84562780 84562780 G A RP11-383M4.6 Intron 0.20 TCGA-BF-A5EQ-01 9 96082646 96082646 C T WNK2 3'Flank 0.34 TCGA-BF-A5EQ-01 X 107169997 107169997 C T MID2 Silent p.F634F 0.33 TCGA-BF-A5EQ-01 X 108652248 108652248 T A GUCY2F Missense_Mutation p.K647N 0.65 deleterious(0) probably_damaging(0.966) TCGA-BF-A5EQ-01 X 118971734 118971734 G A UPF3B Nonsense_Mutation p.R430* 0.25 TCGA-BF-A5EQ-01 X 132351978 132351978 C T TFDP3 Missense_Mutation p.G104R 0.34 tolerated(0.07) benign(0.117) TCGA-BF-A5EQ-01 X 135430082 135430082 C A GPR112 Missense_Mutation p.S1406Y 0.79 deleterious(0) benign(0.123) TCGA-BF-A5EQ-01 X 13645355 13645355 G A EGFL6 Missense_Mutation p.G505E 0.70 tolerated(0.54) probably_damaging(1) TCGA-BF-A5EQ-01 X 151092751 151092751 C T MAGEA4 Silent p.I205I 0.68 TCGA-BF-A5EQ-01 X 153184327 153184327 G A ARHGAP4 Missense_Mutation p.P371S 0.66 deleterious(0.02) benign(0.057) TCGA-BF-A5EQ-01 X 1718140 1718140 C T AKAP17A Missense_Mutation p.R323C 0.40 deleterious(0) unknown(0) TCGA-BF-A5EQ-01 X 24228894 24228894 T - ZFX Frame_Shift_Del p.C607Vfs*6 0.38 TCGA-BF-A5EQ-01 X 2942185 2942185 G A ARSH Missense_Mutation p.G342E 0.55 deleterious(0) possibly_damaging(0.75) TCGA-BF-A5EQ-01 X 3228955 3228955 G A MXRA5 Missense_Mutation p.T2430M 0.65 tolerated(0.16) possibly_damaging(0.458) TCGA-BF-A5EQ-01 X 35993880 35993880 G A CXorf22 Missense_Mutation p.E855K 0.60 deleterious(0) possibly_damaging(0.869) TCGA-BF-A5EQ-01 X 73960522 73960522 G A KIAA2022 Silent p.S1290S 0.84 TCGA-BF-A5EQ-01 X 75004086 75004086 C T MAGEE2 Silent p.L267L 0.74 TCGA-BF-A5ER-01 10 102054811 102054811 C T PKD2L1 Missense_Mutation p.D476N 0.66 deleterious(0.01) probably_damaging(1) TCGA-BF-A5ER-01 10 13323040 13323040 A C PHYH Missense_Mutation p.I300S 0.54 deleterious(0) possibly_damaging(0.558) TCGA-BF-A5ER-01 10 50902584 50902584 G A C10orf53 Intron 0.61 TCGA-BF-A5ER-01 10 63173249 63173249 C A TMEM26 Missense_Mutation p.W217L 0.47 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ER-01 10 64159529 64159529 C T ZNF365 Intron 0.76 TCGA-BF-A5ER-01 10 70515226 70515229 TTGA - CCAR1 Frame_Shift_Del p.I521Rfs*10 0.09 TCGA-BF-A5ER-01 11 102562675 102562675 C T MMP27 Missense_Mutation p.R455Q 0.41 tolerated(0.09) benign(0.046) TCGA-BF-A5ER-01 11 113860273 113860273 C T HTR3A Missense_Mutation p.R447W 0.38 deleterious(0) possibly_damaging(0.761) TCGA-BF-A5ER-01 11 118886042 118886042 C T CCDC84 Silent p.L277L 0.32 TCGA-BF-A5ER-01 11 118985069 118985069 C T C2CD2L Missense_Mutation p.H636Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ER-01 11 121466457 121466457 G A SORL1 Missense_Mutation p.D1499N 0.33 deleterious(0.01) possibly_damaging(0.878) TCGA-BF-A5ER-01 11 123901179 123901179 C T OR10G8 Missense_Mutation p.P284S 0.31 deleterious(0.01) benign(0.333) TCGA-BF-A5ER-01 11 1276685 1276685 G A MUC5B Silent p.R5321R 0.29 TCGA-BF-A5ER-01 11 128708928 128708928 C T KCNJ1 3'UTR 0.50 TCGA-BF-A5ER-01 11 134253852 134253852 G A B3GAT1 Missense_Mutation p.L115F 0.22 tolerated(0.33) benign(0.244) TCGA-BF-A5ER-01 11 16838456 16838456 C T PLEKHA7 Missense_Mutation p.R586Q 0.35 deleterious(0) benign(0.084) TCGA-BF-A5ER-01 11 30915792 30915792 T A DCDC1 Intron 0.53 TCGA-BF-A5ER-01 11 46671736 46671736 A G ATG13 Silent p.K109K 0.37 TCGA-BF-A5ER-01 11 55606440 55606440 G A OR5D16 Silent p.V71V 0.42 TCGA-BF-A5ER-01 11 57506237 57506237 C T TMX2 Silent p.S181S 0.37 TCGA-BF-A5ER-01 11 5809771 5809771 C T OR52N1 Silent p.K92K 0.38 TCGA-BF-A5ER-01 11 60184046 60184046 G A MS4A14 Silent p.Q568Q 0.41 TCGA-BF-A5ER-01 11 60692086 60692086 C T TMEM132A 5'UTR 0.33 TCGA-BF-A5ER-01 11 64120576 64120576 G A CCDC88B Missense_Mutation p.G1184D 0.27 tolerated(0.06) probably_damaging(1) TCGA-BF-A5ER-01 11 71944008 71944008 C T INPPL1 Silent p.F647F 0.35 TCGA-BF-A5ER-01 11 76900474 76900474 C T MYO7A Missense_Mutation p.L1197F 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A5ER-01 11 7817955 7817955 G A OR5P2 Missense_Mutation p.P179S 0.21 deleterious(0.01) possibly_damaging(0.764) TCGA-BF-A5ER-01 11 92703077 92703077 C T MTNR1B Silent p.I62I 0.20 TCGA-BF-A5ER-01 11 93826736 93826736 G A HEPHL1 Silent p.R788R 0.42 TCGA-BF-A5ER-01 12 10772938 10772938 G A STYK1 Silent p.I358I 0.56 TCGA-BF-A5ER-01 12 124350579 124350579 C T DNAH10 Nonsense_Mutation p.R2258* 0.51 TCGA-BF-A5ER-01 12 131498853 131498853 C T GPR133 Missense_Mutation p.P481S 0.42 tolerated(0.08) probably_damaging(0.99) TCGA-BF-A5ER-01 12 13906781 13906781 G A GRIN2B Silent p.I160I 0.47 TCGA-BF-A5ER-01 12 21028385 21028385 G A SLCO1B3 Missense_Mutation p.G315E 0.10 tolerated(1) benign(0.006) TCGA-BF-A5ER-01 12 22005419 22005419 C T ABCC9 Silent p.L842L 0.28 TCGA-BF-A5ER-01 12 23687440 23687440 G A SOX5 Missense_Mutation p.P669S 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-BF-A5ER-01 12 24048840 24048840 G A SOX5 Missense_Mutation p.P53S 0.25 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-BF-A5ER-01 12 52822453 52822453 C T KRT75 Missense_Mutation p.M370I 0.37 tolerated(0.33) benign(0.015) TCGA-BF-A5ER-01 12 54686470 54686470 G A NFE2 Silent p.I270I 0.48 TCGA-BF-A5ER-01 12 55420545 55420545 G A NEUROD4 Missense_Mutation p.D108N 0.40 deleterious(0) probably_damaging(0.975) TCGA-BF-A5ER-01 12 76425015 76425015 T C PHLDA1 Silent p.K169K 0.50 TCGA-BF-A5ER-01 12 79689859 79689859 G A SYT1 Missense_Mutation p.G162E 0.41 deleterious(0) probably_damaging(0.984) TCGA-BF-A5ER-01 12 9885732 9885732 C T CLECL1 Silent p.R43R 0.56 TCGA-BF-A5ER-01 12 99038456 99038456 C T IKBIP Silent p.K8K 0.38 TCGA-BF-A5ER-01 13 103718718 103718718 C T SLC10A2 5'UTR 0.33 TCGA-BF-A5ER-01 13 36743092 36743092 C T SOHLH2 3'UTR 0.50 TCGA-BF-A5ER-01 13 37427788 37427788 C T SMAD9 Missense_Mutation p.G343E 0.33 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ER-01 13 93879708 93879708 C T GPC6 5'UTR 0.30 TCGA-BF-A5ER-01 13 96234413 96234413 C T DZIP1 3'UTR 0.42 TCGA-BF-A5ER-01 14 105676855 105676855 C T BRF1 3'UTR 0.29 TCGA-BF-A5ER-01 14 20388834 20388834 C T OR4K5 Silent p.L23L 0.30 TCGA-BF-A5ER-01 14 28734072 28734072 G A BNIP3P1 RNA 0.34 TCGA-BF-A5ER-01 14 53539331 53539331 G A DDHD1 Missense_Mutation p.P496L 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 14 55878529 55878529 G A ATG14 Silent p.P4P 0.33 TCGA-BF-A5ER-01 14 63784522 63784522 G A GPHB5 RNA 0.35 TCGA-BF-A5ER-01 14 65241859 65241859 G A SPTB Missense_Mutation p.S1609F 0.34 deleterious(0.01) probably_damaging(0.965) TCGA-BF-A5ER-01 14 88658704 88658704 G A KCNK10 Silent p.F244F 0.36 TCGA-BF-A5ER-01 14 91356869 91356869 C T RPS6KA5 Missense_Mutation p.D600N 0.41 tolerated(0.12) benign(0.396) TCGA-BF-A5ER-01 14 93178032 93178032 G A LGMN Missense_Mutation p.T264I 0.32 deleterious(0) possibly_damaging(0.691) TCGA-BF-A5ER-01 15 28420712 28420712 G A HERC2 Silent p.I3259I 0.46 TCGA-BF-A5ER-01 15 32928050 32928050 C T ARHGAP11A Nonsense_Mutation p.R473* 0.28 TCGA-BF-A5ER-01 15 34023798 34023798 G A RYR3 Missense_Mutation p.D2443N 0.45 probably_damaging(1) TCGA-BF-A5ER-01 15 39876562 39876562 G A THBS1 Missense_Mutation p.G322E 0.35 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ER-01 15 41488054 41488054 C T EXD1 Splice_Site p.X156_splice 0.25 TCGA-BF-A5ER-01 15 50555448 50555448 C T HDC Missense_Mutation p.R63Q 0.39 tolerated(0.13) benign(0.015) TCGA-BF-A5ER-01 15 50884363 50884363 G A TRPM7 Missense_Mutation p.P1357S 0.33 tolerated_low_confidence(0.37) benign(0.001) TCGA-BF-A5ER-01 15 51837889 51837889 G A DMXL2 Missense_Mutation p.P274L 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 15 72541600 72541600 G A PARP6 Missense_Mutation p.S516F 0.47 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ER-01 15 75014767 75014767 G A CYP1A1 Silent p.F224F 0.40 TCGA-BF-A5ER-01 15 75042820 75042820 C T CYP1A2 Silent p.N247N 0.45 TCGA-BF-A5ER-01 15 84373225 84373225 G A ADAMTSL3 Missense_Mutation p.G52R 0.47 deleterious(0.04) probably_damaging(1) TCGA-BF-A5ER-01 15 90611780 90611780 G A ZNF710 Missense_Mutation p.E471K 0.39 deleterious(0.03) probably_damaging(0.992) TCGA-BF-A5ER-01 16 15835640 15835640 C T MYH11 Missense_Mutation p.E884K 0.75 benign(0.037) TCGA-BF-A5ER-01 16 20548527 20548527 G T ACSM2B 3'UTR 0.05 TCGA-BF-A5ER-01 16 3085533 3085533 G A CCDC64B Intron 0.37 TCGA-BF-A5ER-01 16 50388818 50388818 G A BRD7 Nonsense_Mutation p.R92* 0.68 TCGA-BF-A5ER-01 16 55705850 55705850 G A SLC6A2 Missense_Mutation p.G136D 0.57 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ER-01 16 71571180 71571180 C T CHST4 Silent p.I200I 0.61 TCGA-BF-A5ER-01 16 74640916 74640916 C A GLG1 Missense_Mutation p.G26V 0.82 tolerated_low_confidence(0.12) benign(0.011) TCGA-BF-A5ER-01 16 84494308 84494308 G A ATP2C2 Silent p.R794R 0.58 TCGA-BF-A5ER-01 17 21319270 21319270 G A KCNJ12 Missense_Mutation p.D206N 0.12 deleterious(0.03) probably_damaging(1) TCGA-BF-A5ER-01 17 25756950 25756950 G A TBC1D3P5 RNA 0.30 TCGA-BF-A5ER-01 17 37564965 37564965 G A MED1 Missense_Mutation p.T1170I 0.45 tolerated_low_confidence(0.15) unknown(0) TCGA-BF-A5ER-01 17 43037450 43037450 G A C1QL1 3'UTR 0.45 TCGA-BF-A5ER-01 17 45369600 45369600 C T ITGB3 Silent p.I452I 0.48 TCGA-BF-A5ER-01 17 4712641 4712641 C T PLD2 Missense_Mutation p.R180C 0.39 deleterious(0) probably_damaging(0.996) TCGA-BF-A5ER-01 17 48735443 48735443 G A ABCC3 Missense_Mutation p.G163S 0.40 tolerated(0.14) benign(0.285) TCGA-BF-A5ER-01 17 61987988 61987988 G A CSHL1 Intron 0.27 TCGA-BF-A5ER-01 17 7415642 7415642 C A POLR2A Missense_Mutation p.P1491T 0.39 benign(0.01) TCGA-BF-A5ER-01 17 7749568 7749568 G A KDM6B Missense_Mutation p.G137R 0.30 unknown(0) TCGA-BF-A5ER-01 17 80443419 80443419 G T NARF Missense_Mutation p.V340L 0.39 tolerated(1) benign(0.003) TCGA-BF-A5ER-01 17 80887337 80887337 G T TBCD Silent p.L984L 0.09 TCGA-BF-A5ER-01 17 9631904 9631904 G A USP43 Missense_Mutation p.R990K 0.28 tolerated(0.53) benign(0.003) TCGA-BF-A5ER-01 18 10488102 10488102 A C APCDD1 3'UTR 0.26 TCGA-BF-A5ER-01 18 28991351 28991351 C T DSG4 Silent p.T784T 0.33 TCGA-BF-A5ER-01 18 32335956 32335956 G T DTNA Missense_Mutation p.G6W 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-A5ER-01 18 48190835 48190835 C T MAPK4 Silent p.F169F 0.49 TCGA-BF-A5ER-01 18 56203364 56203364 G A ALPK2 Missense_Mutation p.S1352F 0.33 tolerated(0.68) benign(0.032) TCGA-BF-A5ER-01 18 56985705 56985705 C T CPLX4 5'UTR 0.29 TCGA-BF-A5ER-01 18 76752594 76752594 C T SALL3 Silent p.A201A 0.44 TCGA-BF-A5ER-01 19 12461320 12461320 C T ZNF442 Missense_Mutation p.C360Y 0.34 tolerated(1) possibly_damaging(0.589) TCGA-BF-A5ER-01 19 12830100 12830100 G A TNPO2 Silent p.F50F 0.40 TCGA-BF-A5ER-01 19 13988159 13988159 C A NANOS3 Missense_Mutation p.Q33K 0.06 tolerated(0.27) benign(0.007) TCGA-BF-A5ER-01 19 1555372 1555372 G A MEX3D 3'UTR 0.47 TCGA-BF-A5ER-01 19 16025117 16025117 G A CYP4F11 Silent p.P465P 0.39 TCGA-BF-A5ER-01 19 22939511 22939511 G A ZNF99 3'Flank 0.44 TCGA-BF-A5ER-01 19 38954455 38954455 G A RYR1 Silent p.R917R 0.35 TCGA-BF-A5ER-01 19 44890749 44890749 G A ZNF285 Missense_Mutation p.S553L 0.41 deleterious(0.02) benign(0.086) TCGA-BF-A5ER-01 19 45556103 45556103 C T CLASRP Silent p.A84A 0.29 TCGA-BF-A5ER-01 19 54313149 54313149 C T NLRP12 Silent p.K588K 0.44 TCGA-BF-A5ER-01 19 55341804 55341804 C A KIR3DL1 3'UTR 0.43 TCGA-BF-A5ER-01 19 55889382 55889382 C T TMEM190 Silent p.F115F 0.46 TCGA-BF-A5ER-01 19 56104019 56104019 C T FIZ1 Missense_Mutation p.E430K 0.33 tolerated(0.19) possibly_damaging(0.672) TCGA-BF-A5ER-01 19 58101422 58101422 G A ZIK1 Silent p.Q81Q 0.24 TCGA-BF-A5ER-01 19 58352564 58352564 G A ZNF587B Silent p.E174E 0.22 TCGA-BF-A5ER-01 19 5941688 5941688 G A RANBP3 Missense_Mutation p.P117L 0.34 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 19 6974614 6974614 C T EMR4P RNA 0.16 TCGA-BF-A5ER-01 19 757303 757303 G A MISP Silent p.K119K 0.28 TCGA-BF-A5ER-01 19 7911564 7911564 C T EVI5L Missense_Mutation p.R46W 0.34 deleterious(0) probably_damaging(0.927) TCGA-BF-A5ER-01 19 9059684 9059684 C T MUC16 Missense_Mutation p.M9254I 0.38 unknown(0) TCGA-BF-A5ER-01 19 9073213 9073213 G A MUC16 Missense_Mutation p.P4745S 0.36 unknown(0) TCGA-BF-A5ER-01 1 115615589 115615589 G A TSPAN2 Missense_Mutation p.R37W 0.35 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ER-01 1 12887320 12887320 G A PRAMEF11 Silent p.P179P 0.39 TCGA-BF-A5ER-01 1 12921687 12921687 G A PRAMEF2 3'UTR 0.04 TCGA-BF-A5ER-01 1 154247925 154247925 A T HAX1 Silent p.V240V 0.32 TCGA-BF-A5ER-01 1 154247927 154247927 C T HAX1 Missense_Mutation p.T241I 0.33 deleterious(0.01) benign(0.422) TCGA-BF-A5ER-01 1 155011903 155011903 C T DCST1 Missense_Mutation p.T96I 0.35 tolerated(0.15) benign(0.019) TCGA-BF-A5ER-01 1 157490960 157490960 G A FCRL5 Missense_Mutation p.H788Y 0.48 tolerated(0.06) benign(0.35) TCGA-BF-A5ER-01 1 157772412 157772412 C T FCRL1 Missense_Mutation p.G121E 0.38 tolerated(0.23) possibly_damaging(0.597) TCGA-BF-A5ER-01 1 167097935 167097935 G A DUSP27 3'UTR 0.44 TCGA-BF-A5ER-01 1 179631407 179631407 G A TDRD5 Missense_Mutation p.E831K 0.43 deleterious(0.01) possibly_damaging(0.836) TCGA-BF-A5ER-01 1 181019195 181019195 G A MR1 Missense_Mutation p.G126E 0.44 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 1 181702171 181702171 G A CACNA1E Splice_Site p.X983_splice 0.32 TCGA-BF-A5ER-01 1 18702815 18702815 G A IGSF21 Missense_Mutation p.G343R 0.34 deleterious(0.03) benign(0.087) TCGA-BF-A5ER-01 1 18808729 18808729 C T KLHDC7A Silent p.I418I 0.45 TCGA-BF-A5ER-01 1 196965159 196965159 G A CFHR5 Silent p.V266V 0.40 TCGA-BF-A5ER-01 1 228003906 228003906 C T PRSS38 Silent p.S88S 0.31 TCGA-BF-A5ER-01 1 233515031 233515031 G A MLK4 Missense_Mutation p.R760Q 0.34 deleterious(0.03) benign(0.007) TCGA-BF-A5ER-01 1 237777719 237777719 C T RYR2 Missense_Mutation p.S1764F 0.32 benign(0.252) TCGA-BF-A5ER-01 1 237955459 237955459 G A RYR2 Missense_Mutation p.E4540K 0.25 benign(0.02) TCGA-BF-A5ER-01 1 6202345 6202345 G A CHD5 Missense_Mutation p.T760I 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ER-01 1 75596523 75596523 C T LHX8 Intron 0.25 TCGA-BF-A5ER-01 1 7999979 7999979 C T TNFRSF9 Missense_Mutation p.D26N 0.50 tolerated(0.31) benign(0.025) TCGA-BF-A5ER-01 1 92789810 92789810 C T RPAP2 Missense_Mutation p.P445S 0.44 deleterious(0.02) possibly_damaging(0.543) TCGA-BF-A5ER-01 20 20493368 20493368 G A RALGAPA2 Missense_Mutation p.P1549S 0.32 deleterious(0.02) possibly_damaging(0.881) TCGA-BF-A5ER-01 20 33577900 33577900 G A MYH7B Silent p.Q659Q 0.36 TCGA-BF-A5ER-01 20 50407792 50407792 G A SALL4 Silent p.F410F 0.46 TCGA-BF-A5ER-01 20 60348073 60348073 G A CDH4 Silent p.K137K 0.35 TCGA-BF-A5ER-01 20 60902594 60902594 G A LAMA5 Silent p.T1643T 0.42 TCGA-BF-A5ER-01 21 14983023 14983023 C T POTED Silent p.I158I 0.32 TCGA-BF-A5ER-01 21 15872995 15872995 T C SAMSN1 Missense_Mutation p.N276S 0.45 deleterious(0) probably_damaging(0.961) TCGA-BF-A5ER-01 21 34997067 34997067 C T CRYZL1 Splice_Site p.X23_splice 0.31 TCGA-BF-A5ER-01 21 41648069 41648069 C T DSCAM Missense_Mutation p.D771N 0.36 tolerated(0.16) benign(0.142) TCGA-BF-A5ER-01 22 17630570 17630570 G A CECR5 Silent p.I64I 0.36 TCGA-BF-A5ER-01 22 24765203 24765204 CT - SPECC1L Frame_Shift_Del p.A1004Ifs*28 0.28 TCGA-BF-A5ER-01 22 25320254 25320254 C T SGSM1 3'UTR 0.26 TCGA-BF-A5ER-01 22 26829836 26829836 C T ASPHD2 Silent p.P85P 0.33 TCGA-BF-A5ER-01 22 33673187 33673187 G A LARGE Silent p.T644T 0.31 TCGA-BF-A5ER-01 22 45309846 45309846 G A PHF21B Silent p.F229F 0.34 TCGA-BF-A5ER-01 2 10091921 10091921 C T GRHL1 5'UTR 0.46 TCGA-BF-A5ER-01 2 103378700 103378700 C T TMEM182 Silent p.F8F 0.31 TCGA-BF-A5ER-01 2 113736237 113736237 G A IL36G Missense_Mutation p.A8T 0.37 tolerated_low_confidence(0.4) benign(0.008) TCGA-BF-A5ER-01 2 149227385 149227385 C T MBD5 Missense_Mutation p.P625S 0.29 tolerated(0.11) possibly_damaging(0.803) TCGA-BF-A5ER-01 2 149247419 149247419 G A MBD5 Silent p.G1173G 0.35 TCGA-BF-A5ER-01 2 163138977 163138977 T G IFIH1 Missense_Mutation p.E402A 0.42 deleterious(0.04) benign(0.431) TCGA-BF-A5ER-01 2 171693380 171693380 G A GAD1 Missense_Mutation p.A209T 0.52 tolerated(0.06) possibly_damaging(0.883) TCGA-BF-A5ER-01 2 179422872 179422872 C T TTN Missense_Mutation p.G29070E 0.41 TCGA-BF-A5ER-01 2 179428333 179428333 C T TTN Missense_Mutation p.R27509Q 0.39 TCGA-BF-A5ER-01 2 179515489 179515489 G A TTN Missense_Mutation p.P13233L 0.21 TCGA-BF-A5ER-01 2 202002376 202002376 C T CFLAR Intron 0.31 TCGA-BF-A5ER-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-BF-A5ER-01 2 209315518 209315518 A G PTH2R Missense_Mutation p.T300A 0.46 tolerated(0.07) benign(0.044) TCGA-BF-A5ER-01 2 215843703 215843703 G A ABCA12 Missense_Mutation p.S1601L 0.44 deleterious(0) probably_damaging(0.982) TCGA-BF-A5ER-01 2 217142513 217142513 G A MARCH4 Silent p.I249I 0.37 TCGA-BF-A5ER-01 2 220096764 220096764 T C ANKZF1 Splice_Site p.X87_splice 0.38 TCGA-BF-A5ER-01 2 222428649 222428649 G A EPHA4 Missense_Mutation p.R209C 0.35 deleterious(0) probably_damaging(0.973) TCGA-BF-A5ER-01 2 222428650 222428650 G A EPHA4 Silent p.V208V 0.36 TCGA-BF-A5ER-01 2 29449858 29449858 A C ALK Silent p.P999P 0.31 TCGA-BF-A5ER-01 2 33745639 33745639 C T RASGRP3 Missense_Mutation p.P86S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A5ER-01 2 50318533 50318533 G A NRXN1 Missense_Mutation p.R1256C 0.34 deleterious(0) probably_damaging(0.994) TCGA-BF-A5ER-01 2 61493301 61493301 T G USP34 Missense_Mutation p.E1812A 0.25 tolerated(0.16) benign(0.003) TCGA-BF-A5ER-01 2 86305077 86305077 G A POLR1A Nonsense_Mutation p.R429* 0.39 TCGA-BF-A5ER-01 3 131283179 131283179 G A CPNE4 Silent p.F314F 0.37 TCGA-BF-A5ER-01 3 13429817 13429817 C T NUP210 Missense_Mutation p.E224K 0.43 deleterious(0) possibly_damaging(0.829) TCGA-BF-A5ER-01 3 143550924 143550924 T A SLC9A9 Missense_Mutation p.K105N 0.53 tolerated(0.29) possibly_damaging(0.608) TCGA-BF-A5ER-01 3 195517423 195517423 G A MUC4 Missense_Mutation p.T343I 0.35 unknown(0) TCGA-BF-A5ER-01 3 19974778 19974778 G A EFHB Missense_Mutation p.R245C 0.23 tolerated(0.25) benign(0.002) TCGA-BF-A5ER-01 3 24193892 24193892 C T THRB Missense_Mutation p.E125K 0.37 deleterious(0) probably_damaging(0.986) TCGA-BF-A5ER-01 3 26751761 26751761 A G LRRC3B Missense_Mutation p.K200E 0.59 deleterious(0) benign(0.255) TCGA-BF-A5ER-01 3 38889218 38889218 G T SCN11A Missense_Mutation p.T1448N 0.45 tolerated(0.15) benign(0.109) TCGA-BF-A5ER-01 3 39433458 39433458 T G SLC25A38 Missense_Mutation p.F191V 0.36 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 3 40433669 40433669 G A ENTPD3 Intron 0.42 TCGA-BF-A5ER-01 3 46450266 46450266 G A CCRL2 Silent p.Q244Q 0.43 TCGA-BF-A5ER-01 3 47870521 47870521 C G DHX30 Missense_Mutation p.T88R 0.46 deleterious(0.01) probably_damaging(0.97) TCGA-BF-A5ER-01 3 48618070 48618070 G A COL7A1 Missense_Mutation p.R1666W 0.41 unknown(0) TCGA-BF-A5ER-01 3 52414121 52414121 G A DNAH1 Silent p.K2526K 0.46 TCGA-BF-A5ER-01 3 52525371 52525371 C T NISCH Missense_Mutation p.S1249F 0.37 tolerated(0.69) probably_damaging(0.962) TCGA-BF-A5ER-01 3 63638402 63638402 C A SNTN Silent p.L13L 0.35 TCGA-BF-A5ER-01 3 97454808 97454808 C T EPHA6 Missense_Mutation p.P992S 0.45 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ER-01 3 98251870 98251870 G A GPR15 Silent p.E331E 0.32 TCGA-BF-A5ER-01 4 104640851 104640851 C T TACR3 5'UTR 0.31 TCGA-BF-A5ER-01 4 110639902 110639902 G A PLA2G12A Silent p.F74F 0.43 TCGA-BF-A5ER-01 4 111430879 111430879 G A ENPEP Silent p.T370T 0.37 TCGA-BF-A5ER-01 4 128595284 128595284 C T INTU Missense_Mutation p.S366F 0.20 deleterious(0) probably_damaging(0.913) TCGA-BF-A5ER-01 4 15780155 15780155 G A CD38 Missense_Mutation p.A40T 0.37 tolerated(0.44) benign(0.067) TCGA-BF-A5ER-01 4 159825829 159825829 T A FNIP2 3'UTR 0.38 TCGA-BF-A5ER-01 4 166234389 166234389 G A KLHL2 Splice_Site p.X451_splice 0.41 TCGA-BF-A5ER-01 4 176556126 176556126 G A GPM6A Missense_Mutation p.S256L 0.53 tolerated(0.12) probably_damaging(0.992) TCGA-BF-A5ER-01 4 52729666 52729667 - TAAGCTG DCUN1D4 Frame_Shift_Ins p.N33* 0.21 TCGA-BF-A5ER-01 4 71509481 71509481 C T ENAM Missense_Mutation p.P780S 0.34 tolerated(0.06) benign(0.169) TCGA-BF-A5ER-01 4 79205641 79205641 G A FRAS1 Silent p.Q446Q 0.36 TCGA-BF-A5ER-01 4 90034627 90034627 C T TIGD2 Silent p.L168L 0.29 TCGA-BF-A5ER-01 5 135651363 135651363 C T TRPC7 Silent p.V295V 0.45 TCGA-BF-A5ER-01 5 135692676 135692676 C T TRPC7 Missense_Mutation p.G134S 0.38 tolerated(0.22) benign(0.034) TCGA-BF-A5ER-01 5 140531338 140531338 C T PCDHB6 Silent p.S500S 0.39 TCGA-BF-A5ER-01 5 140626967 140626967 C T PCDHB15 Silent p.L607L 0.34 TCGA-BF-A5ER-01 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.31 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-BF-A5ER-01 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.51 deleterious(0.04) benign(0.008) TCGA-BF-A5ER-01 5 141035448 141035448 G A ARAP3 Silent p.I1320I 0.30 TCGA-BF-A5ER-01 5 160067502 160067502 C T ATP10B Silent p.G322G 0.41 TCGA-BF-A5ER-01 5 168135072 168135072 T C SLIT3 Missense_Mutation p.N918S 0.35 tolerated(0.19) benign(0.05) TCGA-BF-A5ER-01 5 3599572 3599572 C T IRX1 Silent p.T170T 0.40 TCGA-BF-A5ER-01 5 54416362 54416362 G A CDC20B Missense_Mutation p.P411L 0.39 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ER-01 5 71495843 71495843 G A MAP1B Missense_Mutation p.D2221N 0.35 probably_damaging(0.998) TCGA-BF-A5ER-01 5 74034422 74034422 G A GFM2 Silent p.L375L 0.44 TCGA-BF-A5ER-01 5 81613856 81613856 G A ATP6AP1L Missense_Mutation p.A138T 0.27 deleterious(0.02) benign(0.079) TCGA-BF-A5ER-01 5 90059162 90059162 C T GPR98 Missense_Mutation p.S4054L 0.44 possibly_damaging(0.849) TCGA-BF-A5ER-01 5 90101197 90101197 G A GPR98 Missense_Mutation p.V4920I 0.45 benign(0) TCGA-BF-A5ER-01 6 151773704 151773704 C T C6orf211 Silent p.L8L 0.53 TCGA-BF-A5ER-01 6 15627595 15627595 C T DTNBP1 Missense_Mutation p.E112K 0.17 deleterious(0.01) benign(0.309) TCGA-BF-A5ER-01 6 169648708 169648708 G A THBS2 Missense_Mutation p.S138F 0.56 deleterious(0.01) benign(0.016) TCGA-BF-A5ER-01 6 29640996 29640996 G A ZFP57 Missense_Mutation p.P298S 0.64 tolerated(0.17) possibly_damaging(0.547) TCGA-BF-A5ER-01 6 30115548 30115548 G A TRIM40 Missense_Mutation p.G217R 0.15 tolerated_low_confidence(1) benign(0) TCGA-BF-A5ER-01 6 32724137 32724137 G A HLA-DQB2 3'UTR 0.64 TCGA-BF-A5ER-01 6 43515367 43515367 G A XPO5 Missense_Mutation p.P713L 0.13 tolerated(0.41) benign(0.008) TCGA-BF-A5ER-01 6 54806761 54806761 G A FAM83B Missense_Mutation p.G998R 0.20 tolerated(0.66) benign(0.346) TCGA-BF-A5ER-01 6 99728991 99728991 G A FAXC 3'UTR 0.52 TCGA-BF-A5ER-01 7 107866741 107866741 T A NRCAM Missense_Mutation p.D211V 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 7 122114482 122114482 G A CADPS2 Nonsense_Mutation p.Q651* 0.25 TCGA-BF-A5ER-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.55 deleterious(0) probably_damaging(0.967) TCGA-BF-A5ER-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.54 deleterious(0) possibly_damaging(0.838) TCGA-BF-A5ER-01 7 142124391 142124391 G A TRBV6-8 Silent p.F29F 0.21 TCGA-BF-A5ER-01 7 150554310 150554310 G A AOC1 Missense_Mutation p.R251Q 0.77 tolerated(0.69) benign(0.001) TCGA-BF-A5ER-01 7 157015972 157015972 C T UBE3C Missense_Mutation p.S676F 0.84 deleterious(0) possibly_damaging(0.863) TCGA-BF-A5ER-01 7 27140961 27140961 C T HOXA2 Missense_Mutation p.R172Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-BF-A5ER-01 7 27187120 27187120 C T HOXA6 Silent p.K83K 0.42 TCGA-BF-A5ER-01 7 48312160 48312160 C T ABCA13 Missense_Mutation p.S966F 0.45 benign(0.086) TCGA-BF-A5ER-01 7 73513553 73513553 C T LIMK1 Missense_Mutation p.T198I 0.57 tolerated(0.18) probably_damaging(0.98) TCGA-BF-A5ER-01 7 92761825 92761825 C T SAMD9L Missense_Mutation p.E1154K 0.29 tolerated(0.14) benign(0.02) TCGA-BF-A5ER-01 7 94913509 94913509 C T PPP1R9A Missense_Mutation p.S1159L 0.30 tolerated(0.17) benign(0.281) TCGA-BF-A5ER-01 7 97614220 97614220 T G OCM2 3'UTR 0.49 TCGA-BF-A5ER-01 8 10583433 10583433 C T SOX7 Missense_Mutation p.D380N 0.48 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ER-01 8 113418845 113418845 G A CSMD3 Missense_Mutation p.P1906L 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 8 130861604 130861604 C T FAM49B Missense_Mutation p.S242N 0.25 tolerated(0.06) benign(0.114) TCGA-BF-A5ER-01 8 146032829 146032829 C T ZNF517 Silent p.P176P 0.38 TCGA-BF-A5ER-01 8 27294993 27294993 G A PTK2B Missense_Mutation p.E503K 0.51 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ER-01 8 36666238 36666238 A G KCNU1 Missense_Mutation p.N220S 0.30 tolerated(0.35) benign(0.209) TCGA-BF-A5ER-01 8 40554851 40554851 C T ZMAT4 Missense_Mutation p.V88M 0.25 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 8 42183608 42183610 AAG - IKBKB In_Frame_Del p.K704del 0.34 TCGA-BF-A5ER-01 8 42873700 42873700 A - HOOK3 3'UTR 0.21 TCGA-BF-A5ER-01 8 67380580 67380581 TG - ADHFE1 Frame_Shift_Del p.Y467Lfs*21 0.33 TCGA-BF-A5ER-01 8 72111553 72111553 G T EYA1 3'UTR 0.21 TCGA-BF-A5ER-01 8 73849833 73849833 C - KCNB2 Frame_Shift_Del p.P749Rfs*9 0.18 TCGA-BF-A5ER-01 9 104032305 104032305 C T LPPR1 Silent p.T69T 0.41 TCGA-BF-A5ER-01 9 112705363 112705363 C T PALM2 Silent p.S298S 0.41 TCGA-BF-A5ER-01 9 124855603 124855603 G A TTLL11 Missense_Mutation p.P32L 0.33 tolerated_low_confidence(0.07) benign(0.118) TCGA-BF-A5ER-01 9 125618110 125618110 G A RC3H2 Silent p.S834S 0.27 TCGA-BF-A5ER-01 9 133364728 133364728 G A ASS1 Missense_Mutation p.E283K 0.28 deleterious(0) possibly_damaging(0.714) TCGA-BF-A5ER-01 9 18795419 18795419 C T ADAMTSL1 Silent p.S1234S 0.29 TCGA-BF-A5ER-01 9 19305386 19305386 C T DENND4C Missense_Mutation p.P450S 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A5ER-01 9 33470055 33470055 G A NOL6 Silent p.C171C 0.25 TCGA-BF-A5ER-01 9 40774426 40774426 G A ZNF658 Silent p.T283T 0.20 TCGA-BF-A5ER-01 9 79118685 79118685 C T GCNT1 3'UTR 0.36 TCGA-BF-A5ER-01 9 79324086 79324086 G A PRUNE2 Missense_Mutation p.S1035L 0.12 tolerated(0.14) benign(0.009) TCGA-BF-A5ER-01 9 84564578 84564578 G A RP11-383M4.6 Intron 0.44 TCGA-BF-A5ER-01 9 8465523 8465523 G A PTPRD Silent p.L1219L 0.45 TCGA-BF-A5ER-01 9 99285934 99285934 G A CDC14B Silent p.T340T 0.49 TCGA-BF-A5ER-01 9 99285935 99285935 G A CDC14B Missense_Mutation p.T340I 0.50 tolerated(0.13) possibly_damaging(0.708) TCGA-BF-A5ER-01 X 101396012 101396012 C T TCEAL6 Missense_Mutation p.E98K 0.75 tolerated(0.71) possibly_damaging(0.671) TCGA-BF-A5ER-01 X 106116851 106116851 C T TBC1D8B Missense_Mutation p.P1007S 0.92 tolerated(0.09) possibly_damaging(0.817) TCGA-BF-A5ER-01 X 140985250 140985250 G T MAGEC3 Missense_Mutation p.W569L 0.73 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A5ER-01 X 153046785 153046785 C T SRPK3 Silent p.P58P 0.78 TCGA-BF-A5ER-01 X 73071428 73071428 C T XIST RNA 0.84 TCGA-BF-A5ES-01 10 101567191 101567191 C A ABCC2 Missense_Mutation p.N527K 0.32 tolerated(0.58) benign(0.014) TCGA-BF-A5ES-01 10 103906899 103906899 C T PPRC1 Missense_Mutation p.R1384W 0.20 deleterious(0) benign(0.35) TCGA-BF-A5ES-01 10 105800118 105800118 C T COL17A1 Missense_Mutation p.G918R 0.35 probably_damaging(0.997) TCGA-BF-A5ES-01 10 105971913 105971913 G A WDR96 Missense_Mutation p.S196L 0.32 tolerated(0.2) benign(0.003) TCGA-BF-A5ES-01 10 105990541 105990541 G A WDR96 Silent p.Y42Y 0.31 TCGA-BF-A5ES-01 10 106802816 106802816 T A SORCS3 Missense_Mutation p.Y320N 0.39 deleterious(0) probably_damaging(0.951) TCGA-BF-A5ES-01 10 115341847 115341847 C T HABP2 Silent p.L351L 0.28 TCGA-BF-A5ES-01 10 115348143 115348143 G A HABP2 3'UTR 0.46 TCGA-BF-A5ES-01 10 115973154 115973154 G A TDRD1 Missense_Mutation p.M627I 0.27 deleterious(0) possibly_damaging(0.584) TCGA-BF-A5ES-01 10 116038540 116038540 G A VWA2 Missense_Mutation p.G255S 0.45 deleterious(0.03) benign(0.312) TCGA-BF-A5ES-01 10 12226903 12226903 G A NUDT5 Missense_Mutation p.P39L 0.40 deleterious(0) possibly_damaging(0.652) TCGA-BF-A5ES-01 10 123844492 123844492 C T TACC2 Missense_Mutation p.S826F 0.31 possibly_damaging(0.569) TCGA-BF-A5ES-01 10 123845440 123845440 G A TACC2 Missense_Mutation p.G1142E 0.30 possibly_damaging(0.626) TCGA-BF-A5ES-01 10 124380573 124380573 G A DMBT1 Missense_Mutation p.G1633E 0.30 tolerated(0.21) probably_damaging(1) TCGA-BF-A5ES-01 10 125514272 125514272 G A CPXM2 Missense_Mutation p.R642C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 10 18789862 18789862 G A CACNB2 Missense_Mutation p.G193E 0.30 tolerated(0.05) probably_damaging(1) TCGA-BF-A5ES-01 10 22048182 22048182 G A DNAJC1 Silent p.L505L 0.32 TCGA-BF-A5ES-01 10 26825135 26825135 G A APBB1IP Missense_Mutation p.G345R 0.34 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 10 27326901 27326901 C T ANKRD26 Missense_Mutation p.E820K 0.25 deleterious(0.01) probably_damaging(0.935) TCGA-BF-A5ES-01 10 27537474 27537474 G A RP11-85G18.6 Intron 0.20 TCGA-BF-A5ES-01 10 35333707 35333707 G A CUL2 Missense_Mutation p.P218L 0.40 tolerated(0.08) benign(0.016) TCGA-BF-A5ES-01 10 43671477 43671477 A G CSGALNACT2 Missense_Mutation p.I445V 0.38 tolerated(0.33) benign(0.005) TCGA-BF-A5ES-01 10 46965035 46965035 C T SYT15 Missense_Mutation p.G304S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BF-A5ES-01 10 47087779 47087779 G A NPY4R Silent p.E332E 0.19 TCGA-BF-A5ES-01 10 48388804 48388804 C T RBP3 Missense_Mutation p.E692K 0.28 tolerated(0.21) benign(0.292) TCGA-BF-A5ES-01 10 50369650 50369650 G A C10orf128 Missense_Mutation p.S96F 0.31 tolerated(0.06) benign(0) TCGA-BF-A5ES-01 10 5147819 5147819 G A AKR1C3 Missense_Mutation p.M293I 0.40 deleterious(0.02) benign(0.136) TCGA-BF-A5ES-01 10 64430146 64430146 G A ZNF365 3'UTR 0.24 TCGA-BF-A5ES-01 10 70980083 70980083 C T HKDC1 5'UTR 0.38 TCGA-BF-A5ES-01 10 73056476 73056476 C T UNC5B Nonsense_Mutation p.Q823* 0.38 TCGA-BF-A5ES-01 10 75051726 75051726 C T TTC18 Missense_Mutation p.G676D 0.36 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ES-01 10 75082726 75082726 C T TTC18 Missense_Mutation p.E373K 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-BF-A5ES-01 10 75101274 75101274 G A TTC18 Silent p.P225P 0.36 TCGA-BF-A5ES-01 10 79590592 79590592 G A DLG5 Silent p.F596F 0.21 TCGA-BF-A5ES-01 10 85981769 85981769 G A LRIT2 Silent p.S520S 0.40 TCGA-BF-A5ES-01 10 87362291 87362291 G A GRID1 Silent p.T923T 0.30 TCGA-BF-A5ES-01 10 98182358 98182358 G A TLL2 Silent p.T255T 0.37 TCGA-BF-A5ES-01 11 100170107 100170107 G A CNTN5 Missense_Mutation p.V867I 0.42 tolerated(0.84) benign(0.015) TCGA-BF-A5ES-01 11 101362377 101362377 C T TRPC6 Silent p.L346L 0.40 TCGA-BF-A5ES-01 11 108550156 108550156 T G DDX10 Silent p.V239V 0.28 TCGA-BF-A5ES-01 11 117258093 117258093 C T CEP164 Silent p.I633I 0.30 TCGA-BF-A5ES-01 11 118133292 118133292 C T MPZL2 Silent p.G99G 0.31 TCGA-BF-A5ES-01 11 118769391 118769391 C T BCL9L Missense_Mutation p.M1411I 0.27 benign(0.015) TCGA-BF-A5ES-01 11 118955590 118955590 G A HMBS 5'Flank 0.56 TCGA-BF-A5ES-01 11 119045744 119045744 C T NLRX1 Silent p.L478L 0.25 TCGA-BF-A5ES-01 11 120924285 120924285 C T TBCEL Missense_Mutation p.P100L 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 11 121033040 121033040 G A TECTA Missense_Mutation p.G1745R 0.36 deleterious(0) probably_damaging(0.956) TCGA-BF-A5ES-01 11 121477936 121477936 G A SORL1 Silent p.Q1701Q 0.40 TCGA-BF-A5ES-01 11 122776054 122776054 G A C11orf63 Intron 0.21 TCGA-BF-A5ES-01 11 122776055 122776055 G T C11orf63 Intron 0.21 TCGA-BF-A5ES-01 11 124413492 124413492 G A OR8B12 Missense_Mutation p.P20L 0.24 deleterious_low_confidence(0.03) benign(0.021) TCGA-BF-A5ES-01 11 124413493 124413493 G A OR8B12 Missense_Mutation p.P20S 0.23 tolerated_low_confidence(0.07) benign(0.079) TCGA-BF-A5ES-01 11 125885396 125885396 G A CDON Missense_Mutation p.S313F 0.29 deleterious(0.03) probably_damaging(0.958) TCGA-BF-A5ES-01 11 13399936 13399936 G A ARNTL Silent p.R488R 0.35 TCGA-BF-A5ES-01 11 134253616 134253616 G A B3GAT1 Silent p.F193F 0.53 TCGA-BF-A5ES-01 11 18288488 18288488 C A SAA1 Missense_Mutation p.S18R 0.28 deleterious(0.02) possibly_damaging(0.774) TCGA-BF-A5ES-01 11 18288489 18288489 C T SAA1 Nonsense_Mutation p.R19* 0.27 TCGA-BF-A5ES-01 11 2424652 2424652 C T TSSC4 Silent p.P263P 0.47 TCGA-BF-A5ES-01 11 26584709 26584709 C T MUC15 Silent p.T293T 0.24 TCGA-BF-A5ES-01 11 28058059 28058059 G A KIF18A Nonsense_Mutation p.Q701* 0.36 TCGA-BF-A5ES-01 11 43284011 43284011 G A HNRNPKP3 RNA 0.26 TCGA-BF-A5ES-01 11 4566712 4566712 G T OR52M1 Missense_Mutation p.A98S 0.31 deleterious(0.04) benign(0.141) TCGA-BF-A5ES-01 11 46388858 46388858 C T DGKZ Missense_Mutation p.S249L 0.41 deleterious(0.02) benign(0.148) TCGA-BF-A5ES-01 11 47612319 47612319 C T C1QTNF4 Nonsense_Mutation p.W15* 0.29 TCGA-BF-A5ES-01 11 5020968 5020968 C T OR51L1 Silent p.I252I 0.23 TCGA-BF-A5ES-01 11 5080576 5080576 G A OR52E2 Silent p.I94I 0.35 TCGA-BF-A5ES-01 11 55587294 55587294 C T OR5D18 Silent p.F63F 0.33 TCGA-BF-A5ES-01 11 5906341 5906341 C T OR52E4 Silent p.I273I 0.33 TCGA-BF-A5ES-01 11 60704732 60704732 C T SLC15A3 Missense_Mutation p.G569S 0.35 tolerated(0.77) benign(0.005) TCGA-BF-A5ES-01 11 62301462 62301462 G A AHNAK Missense_Mutation p.L143F 0.33 possibly_damaging(0.804) TCGA-BF-A5ES-01 11 62545519 62545519 C T TAF6L Missense_Mutation p.P102S 0.35 tolerated(0.33) benign(0.017) TCGA-BF-A5ES-01 11 65792973 65792973 G A CATSPER1 Missense_Mutation p.T293I 0.42 tolerated(0.21) benign(0.181) TCGA-BF-A5ES-01 11 65829443 65829443 C T SF3B2 Missense_Mutation p.P651S 0.17 deleterious(0) possibly_damaging(0.886) TCGA-BF-A5ES-01 11 67052617 67052617 C T ADRBK1 Silent p.L621L 0.33 TCGA-BF-A5ES-01 11 67052618 67052618 C T ADRBK1 Missense_Mutation p.L622F 0.33 tolerated(0.1) benign(0.053) TCGA-BF-A5ES-01 11 71718470 71718470 C T NUMA1 Missense_Mutation p.R1743H 0.16 benign(0.031) TCGA-BF-A5ES-01 11 94113452 94113452 G A GPR83 Missense_Mutation p.P379S 0.21 tolerated(0.05) benign(0.061) TCGA-BF-A5ES-01 12 109614057 109614057 C T ACACB Missense_Mutation p.L476F 0.39 tolerated(0.08) benign(0.033) TCGA-BF-A5ES-01 12 109724553 109724553 G A FOXN4 Intron 0.40 TCGA-BF-A5ES-01 12 111956160 111956160 G A ATXN2 Missense_Mutation p.S513L 0.32 benign(0.407) TCGA-BF-A5ES-01 12 112229918 112229918 C T ALDH2 Silent p.T283T 0.28 TCGA-BF-A5ES-01 12 113532922 113532922 G A DTX1 Missense_Mutation p.E488K 0.34 deleterious(0) benign(0.013) TCGA-BF-A5ES-01 12 120536616 120536616 T A RAB35 Missense_Mutation p.E159V 0.33 deleterious(0) possibly_damaging(0.464) TCGA-BF-A5ES-01 12 121441882 121441882 G A C12orf43 3'UTR 0.29 TCGA-BF-A5ES-01 12 123285934 123285934 G A CCDC62 Missense_Mutation p.G414E 0.36 deleterious(0) probably_damaging(0.921) TCGA-BF-A5ES-01 12 13716667 13716667 C T GRIN2B Missense_Mutation p.G1169R 0.24 tolerated_low_confidence(0.13) probably_damaging(0.934) TCGA-BF-A5ES-01 12 13717043 13717043 G A GRIN2B Silent p.S1043S 0.29 TCGA-BF-A5ES-01 12 13717045 13717045 A T GRIN2B Missense_Mutation p.S1043T 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-BF-A5ES-01 12 21327597 21327597 G A SLCO1B1 Missense_Mutation p.G105R 0.27 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ES-01 12 21531432 21531432 C T IAPP 3'UTR 0.42 TCGA-BF-A5ES-01 12 21716178 21716178 G A GYS2 Nonsense_Mutation p.R309* 0.41 TCGA-BF-A5ES-01 12 301686 301686 G A SLC6A12 Silent p.F553F 0.38 TCGA-BF-A5ES-01 12 31945059 31945059 C T H3F3C Silent p.G14G 0.32 TCGA-BF-A5ES-01 12 33031217 33031217 G A PKP2 Silent p.I199I 0.37 TCGA-BF-A5ES-01 12 41386947 41386947 G A CNTN1 Missense_Mutation p.M663I 0.34 tolerated(0.11) benign(0.259) TCGA-BF-A5ES-01 12 46245212 46245212 C T ARID2 Silent p.A1102A 0.26 TCGA-BF-A5ES-01 12 46246315 46246315 C G ARID2 Nonsense_Mutation p.S1470* 0.09 TCGA-BF-A5ES-01 12 48272773 48272773 C T VDR Missense_Mutation p.E92K 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-BF-A5ES-01 12 48877038 48877038 C T C12orf54 5'UTR 0.28 TCGA-BF-A5ES-01 12 48962955 48962955 C T LALBA Missense_Mutation p.E68K 0.31 deleterious(0) possibly_damaging(0.654) TCGA-BF-A5ES-01 12 49435127 49435127 G T KMT2D Missense_Mutation p.F2142L 0.30 probably_damaging(0.977) TCGA-BF-A5ES-01 12 53680469 53680469 G A ESPL1 Missense_Mutation p.G1317R 0.28 tolerated(0.35) benign(0.043) TCGA-BF-A5ES-01 12 53823691 53823691 G A AMHR2 Missense_Mutation p.R406Q 0.25 tolerated(0.09) possibly_damaging(0.553) TCGA-BF-A5ES-01 12 54396440 54396440 C T HOXC9 Silent p.T255T 0.32 TCGA-BF-A5ES-01 12 56234593 56234593 C T MMP19 Silent p.R126R 0.33 TCGA-BF-A5ES-01 12 56495319 56495319 C T ERBB3 Missense_Mutation p.P1170L 0.32 tolerated(0.3) benign(0.01) TCGA-BF-A5ES-01 12 6103743 6103743 G A VWF Missense_Mutation p.P2032S 0.29 deleterious(0) probably_damaging(0.96) TCGA-BF-A5ES-01 12 6103744 6103744 A C VWF Silent p.V2031V 0.30 TCGA-BF-A5ES-01 12 64815118 64815118 A G XPOT Missense_Mutation p.K316R 0.31 tolerated(0.42) benign(0.072) TCGA-BF-A5ES-01 12 6939805 6939805 C A LEPREL2 Missense_Mutation p.H285N 0.29 deleterious(0) benign(0.376) TCGA-BF-A5ES-01 12 7252509 7252509 C A C1RL Missense_Mutation p.A202S 0.36 tolerated(0.36) benign(0.004) TCGA-BF-A5ES-01 12 7475830 7475830 G A ACSM4 Missense_Mutation p.G376R 0.33 tolerated(0.07) probably_damaging(0.996) TCGA-BF-A5ES-01 12 80730315 80730315 G A OTOGL Missense_Mutation p.E1566K 0.21 tolerated(0.44) benign(0.389) TCGA-BF-A5ES-01 12 80770955 80770955 G A OTOGL Silent p.R2269R 0.23 TCGA-BF-A5ES-01 12 8628784 8628784 G T CLEC6A Missense_Mutation p.G145C 0.34 deleterious(0) probably_damaging(0.99) TCGA-BF-A5ES-01 12 98849225 98849225 G A SLC9A7P1 RNA 0.44 TCGA-BF-A5ES-01 13 101736063 101736063 C T NALCN Silent p.P1194P 0.15 TCGA-BF-A5ES-01 13 24243037 24243037 C T TNFRSF19 Missense_Mutation p.S349L 0.35 tolerated_low_confidence(0.25) benign(0.045) TCGA-BF-A5ES-01 13 25074496 25074496 G A PARP4 Missense_Mutation p.P120L 0.41 tolerated(0.42) benign(0) TCGA-BF-A5ES-01 13 46559685 46559685 G A ZC3H13 Silent p.T489T 0.29 TCGA-BF-A5ES-01 13 99340798 99340798 G A SLC15A1 Silent p.I500I 0.26 TCGA-BF-A5ES-01 14 101348357 101348357 C T RTL1 Silent p.K923K 0.39 TCGA-BF-A5ES-01 14 105241281 105241281 G A AKT1 Silent p.F209F 0.19 TCGA-BF-A5ES-01 14 106610588 106610588 C T IGHV3-15 Missense_Mutation p.G28R 0.20 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-BF-A5ES-01 14 107048753 107048753 G A IGHV3-53 Silent p.S89S 0.22 TCGA-BF-A5ES-01 14 107131114 107131114 G A IGHV3-66 Silent p.S89S 0.11 TCGA-BF-A5ES-01 14 20216249 20216249 C T OR4Q3 Silent p.I221I 0.20 TCGA-BF-A5ES-01 14 20216339 20216339 C T OR4Q3 Silent p.I251I 0.15 TCGA-BF-A5ES-01 14 20612745 20612745 C T OR4N5 Missense_Mutation p.P284L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 14 21993355 21993355 G A SALL2 Silent p.P169P 0.36 TCGA-BF-A5ES-01 14 22434209 22434209 G A TRAV12-3 Missense_Mutation p.D88N 0.38 tolerated(1) benign(0.007) TCGA-BF-A5ES-01 14 22580970 22580970 T C TRAV25 Missense_Mutation p.Y105H 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 14 24602003 24602003 C G FITM1 Missense_Mutation p.R284G 0.27 tolerated(0.44) benign(0) TCGA-BF-A5ES-01 14 24901241 24901241 G A KHNYN Silent p.E258E 0.45 TCGA-BF-A5ES-01 14 26917316 26917316 G A NOVA1 Missense_Mutation p.S458F 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 14 37153959 37153959 G A SLC25A21 Nonsense_Mutation p.Q259* 0.28 TCGA-BF-A5ES-01 14 45583411 45583411 C T PRPF39 Nonsense_Mutation p.Q595* 0.31 TCGA-BF-A5ES-01 14 55817138 55817138 G A FBXO34 Silent p.Q10Q 0.34 TCGA-BF-A5ES-01 14 72939633 72939633 G A RGS6 Missense_Mutation p.R197Q 0.30 deleterious(0.02) probably_damaging(0.982) TCGA-BF-A5ES-01 14 77914846 77914846 C T VIPAS39 Silent p.R165R 0.28 TCGA-BF-A5ES-01 14 77914847 77914847 C T VIPAS39 Missense_Mutation p.R165Q 0.28 tolerated(0.13) benign(0.001) TCGA-BF-A5ES-01 14 90651196 90651196 C T KCNK13 Missense_Mutation p.S359L 0.32 deleterious(0.03) possibly_damaging(0.775) TCGA-BF-A5ES-01 14 92624066 92624066 T G CPSF2 Missense_Mutation p.I553M 0.30 deleterious(0.01) probably_damaging(0.97) TCGA-BF-A5ES-01 15 101550947 101550947 C T LRRK1 Missense_Mutation p.P396S 0.20 tolerated(0.06) possibly_damaging(0.836) TCGA-BF-A5ES-01 15 24921998 24921998 G A NPAP1 Silent p.R328R 0.43 TCGA-BF-A5ES-01 15 28424110 28424110 G A HERC2 Missense_Mutation p.S3029F 0.37 probably_damaging(0.979) TCGA-BF-A5ES-01 15 28499560 28499560 A - HERC2 Frame_Shift_Del p.I993Lfs*32 0.21 TCGA-BF-A5ES-01 15 41192218 41192218 C T VPS18 Missense_Mutation p.T401I 0.36 tolerated(0.25) benign(0.007) TCGA-BF-A5ES-01 15 45654379 45654379 G A GATM Silent p.S400S 0.28 TCGA-BF-A5ES-01 15 48458176 48458176 G A MYEF2 Missense_Mutation p.T160I 0.28 tolerated(0.23) possibly_damaging(0.593) TCGA-BF-A5ES-01 15 48499913 48499913 G A SLC12A1 5'UTR 0.27 TCGA-BF-A5ES-01 15 52536606 52536606 C T MYO5C Silent p.E779E 0.37 TCGA-BF-A5ES-01 15 52901489 52901489 G A FAM214A Missense_Mutation p.S541F 0.40 deleterious(0.03) possibly_damaging(0.852) TCGA-BF-A5ES-01 15 55838723 55838723 G A PYGO1 Missense_Mutation p.S253F 0.30 deleterious(0.02) possibly_damaging(0.656) TCGA-BF-A5ES-01 15 57918037 57918037 G A GCOM1 Missense_Mutation p.D158N 0.30 tolerated(0.07) benign(0.444) TCGA-BF-A5ES-01 15 69718720 69718720 C T KIF23 Missense_Mutation p.S298F 0.32 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 15 71124678 71124678 G A LARP6 Missense_Mutation p.P397S 0.24 deleterious(0.03) possibly_damaging(0.688) TCGA-BF-A5ES-01 15 72152083 72152083 G A MYO9A Missense_Mutation p.S2049F 0.30 deleterious(0) possibly_damaging(0.642) TCGA-BF-A5ES-01 15 72501100 72501100 A G PKM Missense_Mutation p.V233A 0.28 deleterious(0.02) benign(0.366) TCGA-BF-A5ES-01 15 74883575 74883575 A G ARID3B Missense_Mutation p.N322S 0.32 deleterious(0) probably_damaging(0.996) TCGA-BF-A5ES-01 15 79058785 79058785 G A ADAMTS7 Silent p.F1156F 0.38 TCGA-BF-A5ES-01 15 83926276 83926276 G A BNC1 Missense_Mutation p.S968L 0.34 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 15 86287924 86287924 C T AKAP13 3'UTR 0.25 TCGA-BF-A5ES-01 15 89402085 89402085 G A ACAN Missense_Mutation p.G2090E 0.28 tolerated(0.36) possibly_damaging(0.541) TCGA-BF-A5ES-01 15 89744671 89744671 C T ABHD2 3'UTR 0.19 TCGA-BF-A5ES-01 16 10729752 10729752 G A TEKT5 Silent p.A370A 0.37 TCGA-BF-A5ES-01 16 10729753 10729753 G A TEKT5 Missense_Mutation p.A370V 0.37 tolerated(0.18) benign(0.002) TCGA-BF-A5ES-01 16 10770032 10770032 G A TEKT5 Silent p.S290S 0.43 TCGA-BF-A5ES-01 16 10788500 10788500 G A TEKT5 Silent p.I77I 0.30 TCGA-BF-A5ES-01 16 11004091 11004091 C T CIITA Missense_Mutation p.R955W 0.35 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 16 16286700 16286700 C T ABCC6 Missense_Mutation p.R473K 0.38 tolerated(0.17) benign(0.014) TCGA-BF-A5ES-01 16 20084957 20084957 C T GPR139 5'UTR 0.33 TCGA-BF-A5ES-01 16 20489966 20489966 C T ACSM2A Silent p.P416P 0.39 TCGA-BF-A5ES-01 16 20492180 20492180 G A ACSM2A Silent p.L482L 0.23 TCGA-BF-A5ES-01 16 23391937 23391937 G A SCNN1B Missense_Mutation p.E580K 0.33 tolerated(0.11) benign(0.439) TCGA-BF-A5ES-01 16 28619845 28619845 G A SULT1A1 Silent p.F76F 0.35 TCGA-BF-A5ES-01 16 28944407 28944407 G A CD19 Silent p.R177R 0.30 TCGA-BF-A5ES-01 16 28997710 28997710 C T LAT Missense_Mutation p.P121S 0.30 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BF-A5ES-01 16 2946666 2946666 C T FLYWCH2 Silent p.G72G 0.33 TCGA-BF-A5ES-01 16 30533021 30533021 G A ITGAL 3'UTR 0.41 TCGA-BF-A5ES-01 16 30533022 30533022 G A ITGAL 3'UTR 0.38 TCGA-BF-A5ES-01 16 3490915 3490915 C T ZNF597 Missense_Mutation p.D18N 0.30 deleterious(0.03) benign(0.291) TCGA-BF-A5ES-01 16 46761273 46761273 G A MYLK3 Missense_Mutation p.L597F 0.19 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 16 570764 570764 C T RAB11FIP3 Silent p.F732F 0.31 TCGA-BF-A5ES-01 16 58566153 58566153 C T CNOT1 Silent p.Q2014Q 0.26 TCGA-BF-A5ES-01 16 602526 602526 C T CAPN15 Silent p.P911P 0.31 TCGA-BF-A5ES-01 16 624746 624746 A G PIGQ Silent p.S224S 0.33 TCGA-BF-A5ES-01 16 69681106 69681106 C T NFAT5 Silent p.T143T 0.29 TCGA-BF-A5ES-01 16 75186804 75186804 C T ZFP1 Intron 0.37 TCGA-BF-A5ES-01 16 7703916 7703916 C T RBFOX1 Missense_Mutation p.A306V 0.36 deleterious(0) possibly_damaging(0.864) TCGA-BF-A5ES-01 16 77910306 77910306 C T VAT1L Silent p.L254L 0.50 TCGA-BF-A5ES-01 17 10359011 10359011 C T MYH4 Silent p.R698R 0.28 TCGA-BF-A5ES-01 17 11835419 11835419 G A DNAH9 Missense_Mutation p.R4065Q 0.32 possibly_damaging(0.737) TCGA-BF-A5ES-01 17 12647578 12647578 C T MYOCD Missense_Mutation p.H266Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 17 16068431 16068431 A T NCOR1 Silent p.I160I 0.16 TCGA-BF-A5ES-01 17 16691255 16691255 G A CCDC144A 3'UTR 0.10 TCGA-BF-A5ES-01 17 18022573 18022573 G A MYO15A Silent p.Q153Q 0.27 TCGA-BF-A5ES-01 17 19317801 19317801 G A RNF112 Missense_Mutation p.G306R 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-BF-A5ES-01 17 19809486 19809486 G A AKAP10 3'UTR 0.27 TCGA-BF-A5ES-01 17 20769871 20769871 C T CCDC144NL Silent p.R187R 0.31 TCGA-BF-A5ES-01 17 3119730 3119730 C T OR1A1 Silent p.I272I 0.27 TCGA-BF-A5ES-01 17 3195778 3195778 G A OR3A1 Silent p.L33L 0.33 TCGA-BF-A5ES-01 17 39023167 39023167 C T KRT12 Missense_Mutation p.G91E 0.24 deleterious(0.01) unknown(0) TCGA-BF-A5ES-01 17 39273956 39273956 G A KRTAP4-11 3'UTR 0.25 TCGA-BF-A5ES-01 17 39273957 39273957 A T KRTAP4-11 3'UTR 0.23 TCGA-BF-A5ES-01 17 45299139 45299139 C T MYL4 Silent p.F135F 0.44 TCGA-BF-A5ES-01 17 48453133 48453133 A G EME1 Silent p.T188T 0.31 TCGA-BF-A5ES-01 17 48741198 48741198 C T ABCC3 Silent p.I385I 0.35 TCGA-BF-A5ES-01 17 4936389 4936389 C T SLC52A1 Missense_Mutation p.G404S 0.33 tolerated(0.2) probably_damaging(1) TCGA-BF-A5ES-01 17 56350248 56350248 C T MPO Missense_Mutation p.M551I 0.31 tolerated(0.31) benign(0.2) TCGA-BF-A5ES-01 17 58234034 58234034 G A CA4 Missense_Mutation p.D76N 0.21 tolerated(0.21) benign(0.406) TCGA-BF-A5ES-01 17 62493113 62493113 C T POLG2 5'UTR 0.32 TCGA-BF-A5ES-01 17 64684479 64684479 G A PRKCA Missense_Mutation p.R249Q 0.33 tolerated(0.13) benign(0.378) TCGA-BF-A5ES-01 17 66887642 66887642 G A ABCA8 Silent p.I1004I 0.38 TCGA-BF-A5ES-01 17 71380130 71380130 G A SDK2 Silent p.I1530I 0.26 TCGA-BF-A5ES-01 17 73016465 73016465 C T ICT1 Missense_Mutation p.P114L 0.32 deleterious(0.04) benign(0.287) TCGA-BF-A5ES-01 17 7329932 7329932 C T C17orf74 Nonsense_Mutation p.Q208* 0.27 TCGA-BF-A5ES-01 17 7370092 7370092 G A ZBTB4 Missense_Mutation p.P10L 0.40 unknown(0) TCGA-BF-A5ES-01 17 7370093 7370093 G A ZBTB4 Missense_Mutation p.P10S 0.40 unknown(0) TCGA-BF-A5ES-01 17 7662772 7662772 G A DNAH2 Silent p.R827R 0.30 TCGA-BF-A5ES-01 17 7836448 7836448 C T CNTROB Silent p.L17L 0.30 TCGA-BF-A5ES-01 17 7836449 7836449 C T CNTROB Silent p.L18L 0.30 TCGA-BF-A5ES-01 17 8248987 8248987 G A ODF4 Silent p.A197A 0.38 TCGA-BF-A5ES-01 18 21438662 21438662 G A LAMA3 Missense_Mutation p.E1431K 0.25 benign(0.068) TCGA-BF-A5ES-01 18 23632749 23632749 G A SS18 Missense_Mutation p.S149F 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-A5ES-01 18 2732318 2732318 A G SMCHD1 Missense_Mutation p.H1035R 0.30 tolerated(1) benign(0.006) TCGA-BF-A5ES-01 18 30092380 30092380 C T WBP11P1 RNA 0.45 TCGA-BF-A5ES-01 18 30092442 30092442 C T WBP11P1 RNA 0.37 TCGA-BF-A5ES-01 18 31323276 31323276 C T ASXL3 Missense_Mutation p.S1155L 0.37 benign(0.027) TCGA-BF-A5ES-01 18 47777129 47777129 C T CCDC11 Missense_Mutation p.R332K 0.26 tolerated(1) benign(0.014) TCGA-BF-A5ES-01 18 50278496 50278496 G A DCC Missense_Mutation p.G55E 0.31 tolerated(0.23) benign(0.124) TCGA-BF-A5ES-01 18 50912422 50912422 C A DCC Missense_Mutation p.S790Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 18 52921727 52921727 C T TCF4 Splice_Site p.X552_splice 0.33 TCGA-BF-A5ES-01 18 54591317 54591317 G A WDR7 Missense_Mutation p.D1231N 0.37 tolerated(0.06) probably_damaging(0.957) TCGA-BF-A5ES-01 18 56202326 56202326 G A ALPK2 Missense_Mutation p.S1698L 0.31 tolerated(0.66) benign(0.001) TCGA-BF-A5ES-01 18 56892859 56892859 A T GRP Missense_Mutation p.E92V 0.34 tolerated(0.11) benign(0.007) TCGA-BF-A5ES-01 18 6870663 6870663 G A ARHGAP28 Missense_Mutation p.V137I 0.24 tolerated(0.64) benign(0.008) TCGA-BF-A5ES-01 18 70461449 70461449 C T NETO1 Missense_Mutation p.G181E 0.24 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 18 9396520 9396520 C T TWSG1 Missense_Mutation p.H156Y 0.11 tolerated(0.28) benign(0.062) TCGA-BF-A5ES-01 18 9887652 9887652 C T TXNDC2 Silent p.S392S 0.30 TCGA-BF-A5ES-01 19 11436119 11436119 G A RAB3D Silent p.A205A 0.40 TCGA-BF-A5ES-01 19 1376624 1376624 C T MUM1 3'UTR 0.33 TCGA-BF-A5ES-01 19 14030693 14030693 C T CC2D1A Silent p.L429L 0.31 TCGA-BF-A5ES-01 19 14508949 14508949 C T CD97 Nonsense_Mutation p.Q299* 0.28 TCGA-BF-A5ES-01 19 14863328 14863328 G A EMR2 Missense_Mutation p.P534L 0.33 tolerated(0.29) benign(0.33) TCGA-BF-A5ES-01 19 19609453 19609453 C T GATAD2A Silent p.L376L 0.34 TCGA-BF-A5ES-01 19 31039830 31039830 C T ZNF536 Missense_Mutation p.P1102S 0.30 tolerated_low_confidence(0.32) benign(0.007) TCGA-BF-A5ES-01 19 3909561 3909561 G A ATCAY Missense_Mutation p.R242Q 0.39 tolerated(0.05) possibly_damaging(0.897) TCGA-BF-A5ES-01 19 39433158 39433158 T C FBXO17 3'UTR 0.41 TCGA-BF-A5ES-01 19 39950576 39950576 C T SUPT5H Silent p.F200F 0.38 TCGA-BF-A5ES-01 19 40540982 40540982 C T ZNF780B Missense_Mutation p.R595Q 0.21 tolerated(0.16) benign(0) TCGA-BF-A5ES-01 19 41758751 41758751 G A AXL Missense_Mutation p.G602D 0.46 deleterious(0.02) possibly_damaging(0.673) TCGA-BF-A5ES-01 19 4182553 4182553 G A SIRT6 5'UTR 0.32 TCGA-BF-A5ES-01 19 43358238 43358238 C T PSG10P RNA 0.36 TCGA-BF-A5ES-01 19 4525690 4525690 G A PLIN5 Silent p.H225H 0.31 TCGA-BF-A5ES-01 19 4538433 4538433 G A LRG1 Missense_Mutation p.T188I 0.32 deleterious(0.05) benign(0.248) TCGA-BF-A5ES-01 19 45716527 45716527 C T EXOC3L2 Missense_Mutation p.E344K 0.25 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ES-01 19 48382388 48382388 C G SULT2A1 Splice_Site p.X158_splice 0.34 TCGA-BF-A5ES-01 19 48919391 48919391 G A GRIN2D Missense_Mutation p.V572M 0.30 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 19 48982471 48982471 C T CYTH2 3'UTR 0.27 TCGA-BF-A5ES-01 19 50128816 50128816 C T PRR12 Silent p.S2021S 0.22 TCGA-BF-A5ES-01 19 50549633 50549633 C T ZNF473 Missense_Mutation p.P645S 0.38 tolerated(0.06) possibly_damaging(0.876) TCGA-BF-A5ES-01 19 50549634 50549634 C T ZNF473 Missense_Mutation p.P645L 0.38 deleterious(0.03) possibly_damaging(0.908) TCGA-BF-A5ES-01 19 51465098 51465098 G A KLK6 Silent p.L162L 0.44 TCGA-BF-A5ES-01 19 51919400 51919400 C T SIGLEC10 Missense_Mutation p.G259E 0.47 tolerated(0.14) benign(0.107) TCGA-BF-A5ES-01 19 51919401 51919401 C T SIGLEC10 Missense_Mutation p.G259R 0.47 deleterious(0.03) benign(0.232) TCGA-BF-A5ES-01 19 52468056 52468056 G A ZNF350 3'UTR 0.45 TCGA-BF-A5ES-01 19 53057142 53057142 C T ZNF808 Missense_Mutation p.R325C 0.42 tolerated(0.1) possibly_damaging(0.759) TCGA-BF-A5ES-01 19 5456007 5456007 G A ZNRF4 Missense_Mutation p.D169N 0.32 deleterious(0.03) possibly_damaging(0.616) TCGA-BF-A5ES-01 19 55247673 55247673 C G KIR3DL3 3'UTR 0.36 TCGA-BF-A5ES-01 19 55450935 55450935 G A NLRP7 Silent p.L418L 0.38 TCGA-BF-A5ES-01 19 5733938 5733938 C T CATSPERD Silent p.V116V 0.21 TCGA-BF-A5ES-01 19 621126 621126 G A POLRMT Missense_Mutation p.R858W 0.26 deleterious(0) possibly_damaging(0.67) TCGA-BF-A5ES-01 19 8550597 8550597 C T HNRNPM Missense_Mutation p.R429C 0.33 deleterious(0.04) possibly_damaging(0.724) TCGA-BF-A5ES-01 19 9049125 9049125 G A MUC16 Missense_Mutation p.P10836S 0.38 benign(0.048) TCGA-BF-A5ES-01 19 9059391 9059391 C T MUC16 Missense_Mutation p.R9352K 0.29 unknown(0) TCGA-BF-A5ES-01 19 9091097 9091097 G A MUC16 Silent p.L240L 0.22 TCGA-BF-A5ES-01 19 9091098 9091098 G A MUC16 Silent p.D239D 0.22 TCGA-BF-A5ES-01 1 109533908 109533908 G A WDR47 Missense_Mutation p.P587S 0.32 tolerated(0.59) benign(0) TCGA-BF-A5ES-01 1 113231494 113231494 C T MOV10 Intron 0.37 TCGA-BF-A5ES-01 1 115223075 115223075 C T AMPD1 Missense_Mutation p.G224E 0.34 tolerated(0.12) benign(0.047) TCGA-BF-A5ES-01 1 12835911 12835911 G A PRAMEF12 Silent p.Q171Q 0.26 TCGA-BF-A5ES-01 1 145522632 145522632 C T PEX11B Missense_Mutation p.P165S 0.39 tolerated(0.72) benign(0) TCGA-BF-A5ES-01 1 147380783 147380783 C T GJA8 Missense_Mutation p.S234F 0.38 tolerated(0.82) benign(0.002) TCGA-BF-A5ES-01 1 147381031 147381031 C T GJA8 Nonsense_Mutation p.Q317* 0.40 TCGA-BF-A5ES-01 1 151993740 151993740 C T NBPF18P RNA 0.34 TCGA-BF-A5ES-01 1 153320425 153320425 G A PGLYRP4 5'UTR 0.41 TCGA-BF-A5ES-01 1 154492806 154492806 C T TDRD10 Silent p.D56D 0.24 TCGA-BF-A5ES-01 1 15546152 15546152 C T TMEM51 Silent p.V225V 0.36 TCGA-BF-A5ES-01 1 159846375 159846375 C T CCDC19 Silent p.R441R 0.18 TCGA-BF-A5ES-01 1 159921603 159921603 C T SLAMF9 Missense_Mutation p.G240R 0.49 deleterious(0) possibly_damaging(0.878) TCGA-BF-A5ES-01 1 160111253 160111253 A C ATP1A2 3'UTR 0.33 TCGA-BF-A5ES-01 1 167023500 167023500 G A GPA33 3'UTR 0.28 TCGA-BF-A5ES-01 1 171080110 171080110 G A FMO3 Missense_Mutation p.E267K 0.33 tolerated(0.14) benign(0.168) TCGA-BF-A5ES-01 1 172635061 172635061 C T FASLG Missense_Mutation p.L251F 0.28 tolerated(0.05) possibly_damaging(0.558) TCGA-BF-A5ES-01 1 176564193 176564193 G A PAPPA2 Missense_Mutation p.E485K 0.42 tolerated(0.89) benign(0.055) TCGA-BF-A5ES-01 1 176564652 176564652 G A PAPPA2 Missense_Mutation p.D638N 0.27 tolerated(0.34) benign(0.435) TCGA-BF-A5ES-01 1 178421693 178421693 C T RASAL2 Missense_Mutation p.L639F 0.31 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 1 183536425 183536425 C T NCF2 Missense_Mutation p.E257K 0.35 tolerated(0.07) possibly_damaging(0.781) TCGA-BF-A5ES-01 1 19166676 19166676 G A TAS1R2 Missense_Mutation p.S646F 0.38 deleterious(0) probably_damaging(0.981) TCGA-BF-A5ES-01 1 19444355 19444355 G A UBR4 Missense_Mutation p.P3531S 0.22 probably_damaging(0.968) TCGA-BF-A5ES-01 1 196300353 196300353 C T KCNT2 Missense_Mutation p.G679E 0.28 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 1 196716320 196716320 G A CFH Silent p.S1191S 0.34 TCGA-BF-A5ES-01 1 196977786 196977786 G A CFHR5 Silent p.G561G 0.33 TCGA-BF-A5ES-01 1 197407753 197407753 G A CRB1 Missense_Mutation p.E1276K 0.26 tolerated(0.06) benign(0.019) TCGA-BF-A5ES-01 1 201869640 201869640 C T LMOD1 Silent p.V167V 0.33 TCGA-BF-A5ES-01 1 203311508 203311508 G A FMOD Missense_Mutation p.P365L 0.34 tolerated(0.6) benign(0.391) TCGA-BF-A5ES-01 1 223983604 223983604 T G TP53BP2 Silent p.P879P 0.29 TCGA-BF-A5ES-01 1 230338950 230338950 G A GALNT2 Silent p.Q96Q 0.29 TCGA-BF-A5ES-01 1 236744536 236744536 G A HEATR1 Missense_Mutation p.S914F 0.30 deleterious(0.03) benign(0.013) TCGA-BF-A5ES-01 1 237664042 237664042 C T RYR2 Silent p.N745N 0.25 TCGA-BF-A5ES-01 1 243736334 243736334 G A AKT3 Missense_Mutation p.S238L 0.18 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 1 24710415 24710415 C T STPG1 Missense_Mutation p.G90R 0.29 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 1 247587855 247587855 C T NLRP3 Silent p.I370I 0.31 TCGA-BF-A5ES-01 1 247588251 247588251 C T NLRP3 Silent p.F502F 0.24 TCGA-BF-A5ES-01 1 248551590 248551590 G A OR2T6 Silent p.Q227Q 0.29 TCGA-BF-A5ES-01 1 26510910 26510910 C T CNKSR1 Missense_Mutation p.P340L 0.32 tolerated(0.21) benign(0.002) TCGA-BF-A5ES-01 1 27745536 27745543 CAAAGGTA - WASF2 Frame_Shift_Del p.T60Lfs*8 0.27 TCGA-BF-A5ES-01 1 34015839 34015839 C T CSMD2 Missense_Mutation p.G2808E 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-BF-A5ES-01 1 3703728 3703728 G A LRRC47 Silent p.I254I 0.30 TCGA-BF-A5ES-01 1 39748973 39748973 G C MACF1 Missense_Mutation p.D275H 0.21 probably_damaging(0.999) TCGA-BF-A5ES-01 1 42047141 42047141 G A HIVEP3 Missense_Mutation p.P1110S 0.33 benign(0.004) TCGA-BF-A5ES-01 1 44447416 44447416 G A B4GALT2 Silent p.R152R 0.36 TCGA-BF-A5ES-01 1 45323394 45323394 G A EIF2B3 Nonsense_Mutation p.Q430* 0.35 TCGA-BF-A5ES-01 1 47583574 47583574 G A CYP4Z1 Missense_Mutation p.G496R 0.20 deleterious(0) probably_damaging(0.995) TCGA-BF-A5ES-01 1 48690437 48690437 C T SLC5A9 Silent p.F68F 0.30 TCGA-BF-A5ES-01 1 54344371 54344371 A T YIPF1 Missense_Mutation p.S74T 0.24 tolerated(0.16) benign(0.012) TCGA-BF-A5ES-01 1 55604358 55604358 G A USP24 Missense_Mutation p.H951Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.35 TCGA-BF-A5ES-01 1 66091826 66091826 A G LEPR Intron 0.27 TCGA-BF-A5ES-01 1 86123562 86123562 C T ZNHIT6 Missense_Mutation p.G447E 0.23 tolerated(0.77) benign(0.005) TCGA-BF-A5ES-01 1 91781726 91781726 G A HFM1 Missense_Mutation p.P972S 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 1 92185653 92185653 G A TGFBR3 Missense_Mutation p.P404S 0.38 tolerated(0.14) benign(0.244) TCGA-BF-A5ES-01 1 9778971 9778971 G T PIK3CD Missense_Mutation p.A414S 0.38 tolerated(0.34) benign(0.192) TCGA-BF-A5ES-01 20 13868454 13868454 C T SEL1L2 Missense_Mutation p.E236K 0.25 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ES-01 20 139539 139539 G A DEFB127 Silent p.K58K 0.28 TCGA-BF-A5ES-01 20 207945 207945 C T DEFB129 Missense_Mutation p.P6S 0.33 deleterious(0.01) possibly_damaging(0.857) TCGA-BF-A5ES-01 20 2776933 2776933 G A CPXM1 Missense_Mutation p.P401L 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 20 2777024 2777024 G A CPXM1 Silent p.L371L 0.26 TCGA-BF-A5ES-01 20 29633926 29633926 G A FRG1B 3'UTR 0.15 TCGA-BF-A5ES-01 20 34021795 34021795 G A GDF5 Missense_Mutation p.P473L 0.30 deleterious(0) probably_damaging(0.972) TCGA-BF-A5ES-01 20 35177495 35177495 A C MYL9 Missense_Mutation p.D121A 0.33 deleterious(0.02) probably_damaging(0.941) TCGA-BF-A5ES-01 20 3675469 3675469 G A SIGLEC1 Missense_Mutation p.R929C 0.40 tolerated(0.06) possibly_damaging(0.849) TCGA-BF-A5ES-01 20 44352673 44352673 C T SPINT4 Silent p.A90A 0.30 TCGA-BF-A5ES-01 20 44505629 44505629 C T ZSWIM3 Silent p.S144S 0.26 TCGA-BF-A5ES-01 20 44678403 44678403 C T SLC12A5 Missense_Mutation p.H742Y 0.40 tolerated(0.99) benign(0.003) TCGA-BF-A5ES-01 20 49510567 49510567 G A ADNP Silent p.F228F 0.42 TCGA-BF-A5ES-01 20 54573510 54573510 G C CBLN4 3'UTR 0.38 TCGA-BF-A5ES-01 20 58567483 58567483 C T CDH26 Missense_Mutation p.S445F 0.43 deleterious(0) probably_damaging(0.931) TCGA-BF-A5ES-01 20 58567484 58567484 C T CDH26 Silent p.S445S 0.47 TCGA-BF-A5ES-01 20 61939968 61939968 G A COL20A1 Missense_Mutation p.V284M 0.50 tolerated(0.07) probably_damaging(0.95) TCGA-BF-A5ES-01 20 62364659 62364659 C T ZGPAT Silent p.L225L 0.35 TCGA-BF-A5ES-01 21 11039083 11039083 C T BAGE2 RNA 0.06 TCGA-BF-A5ES-01 21 11058213 11058213 G A BAGE2 RNA 0.11 TCGA-BF-A5ES-01 21 15755501 15755501 C T HSPA13 5'UTR 0.20 TCGA-BF-A5ES-01 21 30248736 30248736 G T N6AMT1 Missense_Mutation p.L206I 0.29 probably_damaging(0.998) TCGA-BF-A5ES-01 21 38390473 38390473 C T RIPPLY3 Missense_Mutation p.S180F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-BF-A5ES-01 21 41414441 41414441 G A DSCAM Missense_Mutation p.T1848M 0.25 deleterious(0) probably_damaging(0.981) TCGA-BF-A5ES-01 21 43161113 43161113 T G RIPK4 Missense_Mutation p.H747P 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A5ES-01 21 43222965 43222965 C A PRDM15 Missense_Mutation p.E1316D 0.28 tolerated_low_confidence(0.08) possibly_damaging(0.541) TCGA-BF-A5ES-01 21 45971241 45971241 G A KRTAP10-2 Missense_Mutation p.P34L 0.38 deleterious(0) probably_damaging(0.927) TCGA-BF-A5ES-01 22 16448915 16448915 G T OR11H1 Missense_Mutation p.T297N 0.19 deleterious(0) probably_damaging(0.929) TCGA-BF-A5ES-01 22 22020292 22020292 G A PPIL2 5'UTR 0.28 TCGA-BF-A5ES-01 22 23264809 23264809 C T IGLC7 Silent p.S15S 0.08 TCGA-BF-A5ES-01 22 24829435 24829435 C T ADORA2A Silent p.I21I 0.32 TCGA-BF-A5ES-01 22 29695641 29695641 C T EWSR1 Silent p.G582G 0.34 TCGA-BF-A5ES-01 22 30951754 30951754 A T GAL3ST1 Missense_Mutation p.V153E 0.35 deleterious(0) probably_damaging(0.935) TCGA-BF-A5ES-01 22 30951755 30951755 C T GAL3ST1 Missense_Mutation p.V153M 0.35 tolerated(0.46) possibly_damaging(0.885) TCGA-BF-A5ES-01 22 32934038 32934038 C T SYN3 Missense_Mutation p.V326M 0.38 deleterious(0) unknown(0) TCGA-BF-A5ES-01 22 36055246 36055246 C T APOL6 Missense_Mutation p.S212F 0.28 deleterious(0) possibly_damaging(0.861) TCGA-BF-A5ES-01 22 36714312 36714312 G A MYH9 Silent p.I389I 0.30 TCGA-BF-A5ES-01 22 38227880 38227880 C T ANKRD54 3'UTR 0.33 TCGA-BF-A5ES-01 22 40417804 40417804 G A FAM83F Silent p.G430G 0.44 TCGA-BF-A5ES-01 22 41790106 41790106 C T TEF Missense_Mutation p.S161F 0.37 tolerated(0.06) benign(0.192) TCGA-BF-A5ES-01 22 41790107 41790107 C T TEF Silent p.S161S 0.37 TCGA-BF-A5ES-01 22 42221928 42221928 C T CCDC134 3'UTR 0.29 TCGA-BF-A5ES-01 22 50615941 50615941 G A PANX2 Missense_Mutation p.G267E 0.23 tolerated(0.83) benign(0.184) TCGA-BF-A5ES-01 2 103281594 103281594 G A SLC9A2 Missense_Mutation p.M263I 0.30 deleterious(0.01) benign(0.376) TCGA-BF-A5ES-01 2 103414377 103414377 C T TMEM182 Silent p.I129I 0.34 TCGA-BF-A5ES-01 2 109490036 109490036 C T CCDC138 Missense_Mutation p.S608F 0.25 deleterious(0) possibly_damaging(0.683) TCGA-BF-A5ES-01 2 111551670 111551670 G A ACOXL Silent p.G88G 0.40 TCGA-BF-A5ES-01 2 111851068 111851068 G A ACOXL Intron 0.21 TCGA-BF-A5ES-01 2 112758834 112758834 C T MERTK Missense_Mutation p.S554F 0.39 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 2 113331214 113331214 G A POLR1B Missense_Mutation p.E783K 0.34 tolerated(0.2) benign(0.008) TCGA-BF-A5ES-01 2 11721022 11721022 G A GREB1 Intron 0.31 TCGA-BF-A5ES-01 2 121742067 121742067 C T GLI2 Silent p.I568I 0.34 TCGA-BF-A5ES-01 2 128331590 128331590 G A MYO7B Missense_Mutation p.A230T 0.33 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 2 128480230 128480230 C T WDR33 Missense_Mutation p.D485N 0.33 deleterious(0.02) unknown(0) TCGA-BF-A5ES-01 2 131890529 131890529 C T PLEKHB2 Missense_Mutation p.P130S 0.37 tolerated(0.1) possibly_damaging(0.899) TCGA-BF-A5ES-01 2 141643727 141643727 C A LRP1B Missense_Mutation p.G1315V 0.25 probably_damaging(0.953) TCGA-BF-A5ES-01 2 158406701 158406701 G A ACVR1C Missense_Mutation p.L250F 0.30 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 2 162862316 162862316 G A DPP4 Missense_Mutation p.S664L 0.52 deleterious(0) probably_damaging(0.983) TCGA-BF-A5ES-01 2 166166959 166166959 G A SCN2A Missense_Mutation p.R275Q 0.29 deleterious(0.01) possibly_damaging(0.477) TCGA-BF-A5ES-01 2 175666465 175666465 G A CHN1 Missense_Mutation p.T393I 0.37 deleterious(0) probably_damaging(0.982) TCGA-BF-A5ES-01 2 179412482 179412482 C T TTN Missense_Mutation p.E31291K 0.38 TCGA-BF-A5ES-01 2 179419801 179419801 G A TTN Missense_Mutation p.A29462V 0.33 TCGA-BF-A5ES-01 2 179475107 179475107 C T TTN Missense_Mutation p.G17049E 0.26 TCGA-BF-A5ES-01 2 179595707 179595707 G A TTN Silent p.F5895F 0.37 TCGA-BF-A5ES-01 2 179610805 179610805 C T TTN Intron 0.28 TCGA-BF-A5ES-01 2 179640923 179640923 G A TTN Missense_Mutation p.R1890C 0.35 TCGA-BF-A5ES-01 2 179665387 179665387 G A TTN Silent p.F106F 0.28 TCGA-BF-A5ES-01 2 187531505 187531505 C T ITGAV Silent p.I747I 0.46 TCGA-BF-A5ES-01 2 187626605 187626605 G A FAM171B Silent p.K512K 0.33 TCGA-BF-A5ES-01 2 189862427 189862427 G A COL3A1 Missense_Mutation p.G624E 0.35 unknown(0) TCGA-BF-A5ES-01 2 196619148 196619148 C T DNAH7 Missense_Mutation p.A3893T 0.32 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 2 196759756 196759756 C T DNAH7 Missense_Mutation p.G1614R 0.24 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 2 197194356 197194356 C T HECW2 Missense_Mutation p.E172K 0.33 tolerated(0.86) benign(0.024) TCGA-BF-A5ES-01 2 200820476 200820476 C T C2orf47 5'UTR 0.25 TCGA-BF-A5ES-01 2 205986601 205986601 C T PARD3B Missense_Mutation p.P365S 0.41 tolerated(0.06) probably_damaging(0.984) TCGA-BF-A5ES-01 2 206628507 206628507 C T NRP2 Silent p.F718F 0.25 TCGA-BF-A5ES-01 2 206659539 206659539 G A NRP2 Silent p.S851S 0.32 TCGA-BF-A5ES-01 2 215812198 215812198 C T ABCA12 Missense_Mutation p.R2396K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 2 219694818 219694818 C T PRKAG3 Nonsense_Mutation p.W172* 0.33 TCGA-BF-A5ES-01 2 219888865 219888865 G A CCDC108 Missense_Mutation p.R823W 0.32 deleterious(0) probably_damaging(0.978) TCGA-BF-A5ES-01 2 219941125 219941125 T A NHEJ1 Missense_Mutation p.K293M 0.40 deleterious(0) probably_damaging(0.995) TCGA-BF-A5ES-01 2 227917061 227917061 T C COL4A4 Silent p.E976E 0.30 TCGA-BF-A5ES-01 2 233344814 233344814 G A ECEL1 3'UTR 0.36 TCGA-BF-A5ES-01 2 238263546 238263546 G A COL6A3 Missense_Mutation p.A2208V 0.38 benign(0.003) TCGA-BF-A5ES-01 2 238280433 238280433 C T COL6A3 Silent p.T1409T 0.26 TCGA-BF-A5ES-01 2 242007269 242007269 C T SNED1 Missense_Mutation p.T1034I 0.50 deleterious(0.04) probably_damaging(0.956) TCGA-BF-A5ES-01 2 24524843 24524843 G A ITSN2 Missense_Mutation p.P329L 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 2 26703117 26703117 G A OTOF Silent p.I622I 0.35 TCGA-BF-A5ES-01 2 27361080 27361080 G A C2orf53 Missense_Mutation p.P40S 0.28 tolerated(0.19) benign(0.033) TCGA-BF-A5ES-01 2 32983472 32983472 C T TTC27 Silent p.S522S 0.21 TCGA-BF-A5ES-01 2 32983473 32983473 C T TTC27 Missense_Mutation p.R523W 0.20 deleterious(0.02) benign(0.339) TCGA-BF-A5ES-01 2 44051191 44051191 G A ABCG5 Silent p.I395I 0.47 TCGA-BF-A5ES-01 2 60688962 60688962 G A BCL11A Missense_Mutation p.P362L 0.33 deleterious(0) probably_damaging(0.996) TCGA-BF-A5ES-01 2 65540511 65540511 G A SPRED2 3'UTR 0.45 TCGA-BF-A5ES-01 2 68607989 68607989 G A PLEK Silent p.R111R 0.28 TCGA-BF-A5ES-01 2 68882322 68882322 G A PROKR1 Missense_Mutation p.G266R 0.36 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 2 74043514 74043514 C T C2orf78 Missense_Mutation p.P722S 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-BF-A5ES-01 2 74328100 74328100 C T TET3 Silent p.S1260S 0.25 TCGA-BF-A5ES-01 2 79348011 79348011 C T REG1A Silent p.F8F 0.45 TCGA-BF-A5ES-01 2 85097471 85097471 G A TRABD2A Missense_Mutation p.R183C 0.30 deleterious(0.01) benign(0.077) TCGA-BF-A5ES-01 2 89157052 89157052 G A IGKC Missense_Mutation p.S49L 0.40 deleterious(0.05) possibly_damaging(0.587) TCGA-BF-A5ES-01 2 9564013 9564013 G A CPSF3 Intron 0.44 TCGA-BF-A5ES-01 2 96952197 96952197 G A SNRNP200 Silent p.S1285S 0.22 TCGA-BF-A5ES-01 3 11061960 11061960 G A SLC6A1 Missense_Mutation p.S178N 0.29 tolerated(0.16) benign(0.261) TCGA-BF-A5ES-01 3 111564690 111564690 C T PLCXD2 3'UTR 0.21 TCGA-BF-A5ES-01 3 113658830 113658830 G A GRAMD1C Missense_Mutation p.E597K 0.26 tolerated(0.21) benign(0.031) TCGA-BF-A5ES-01 3 113955792 113955792 G A ZNF80 Missense_Mutation p.R44C 0.37 tolerated(0.07) benign(0.39) TCGA-BF-A5ES-01 3 120352096 120352096 C T HGD Silent p.G362G 0.32 TCGA-BF-A5ES-01 3 121643813 121643813 C T SLC15A2 Missense_Mutation p.L353F 0.34 deleterious(0) probably_damaging(0.982) TCGA-BF-A5ES-01 3 123699297 123699297 G A ROPN1 Missense_Mutation p.P11L 0.32 deleterious(0.03) probably_damaging(1) TCGA-BF-A5ES-01 3 124165040 124165040 C T KALRN Missense_Mutation p.R1114C 0.34 deleterious(0.03) probably_damaging(0.975) TCGA-BF-A5ES-01 3 127983619 127983619 C T EEFSEC Missense_Mutation p.L261F 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-BF-A5ES-01 3 134851826 134851826 G A EPHB1 Missense_Mutation p.G411E 0.30 deleterious(0.03) probably_damaging(0.955) TCGA-BF-A5ES-01 3 155241772 155241772 G T PLCH1 Missense_Mutation p.L450I 0.30 tolerated(0.51) probably_damaging(0.998) TCGA-BF-A5ES-01 3 156395897 156395897 C T TIPARP Silent p.I137I 0.34 TCGA-BF-A5ES-01 3 160803876 160803876 G A B3GALNT1 Missense_Mutation p.H223Y 0.29 tolerated(1) benign(0) TCGA-BF-A5ES-01 3 179134312 179134312 A - GNB4 Frame_Shift_Del p.L79* 0.29 TCGA-BF-A5ES-01 3 183824404 183824404 G A HTR3E Missense_Mutation p.D458N 0.35 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 3 184290620 184290620 C T EPHB3 Missense_Mutation p.A171V 0.32 tolerated(0.26) benign(0.232) TCGA-BF-A5ES-01 3 186389556 186389556 G A HRG Missense_Mutation p.R179Q 0.39 tolerated(0.87) benign(0.238) TCGA-BF-A5ES-01 3 189612176 189612176 G A TP63 Missense_Mutation p.R643Q 0.34 deleterious(0.03) probably_damaging(0.978) TCGA-BF-A5ES-01 3 193040340 193040340 G A ATP13A5 Silent p.D566D 0.33 TCGA-BF-A5ES-01 3 194158160 194158160 G A ATP13A3 Missense_Mutation p.P627S 0.32 deleterious(0.03) possibly_damaging(0.542) TCGA-BF-A5ES-01 3 19432039 19432039 C T KCNH8 Missense_Mutation p.S293L 0.42 tolerated(0.11) benign(0.315) TCGA-BF-A5ES-01 3 195953985 195953985 C T SLC51A Missense_Mutation p.P95S 0.27 deleterious(0.04) probably_damaging(1) TCGA-BF-A5ES-01 3 24174881 24174881 G A THRB Missense_Mutation p.H271Y 0.35 tolerated(0.07) benign(0.344) TCGA-BF-A5ES-01 3 26751109 26751109 C T LRRC3B 5'UTR 0.35 TCGA-BF-A5ES-01 3 2777965 2777965 C T CNTN4 Missense_Mutation p.S41F 0.28 tolerated(0.07) possibly_damaging(0.89) TCGA-BF-A5ES-01 3 38407158 38407158 C T XYLB Silent p.C146C 0.29 TCGA-BF-A5ES-01 3 38407159 38407159 C T XYLB Missense_Mutation p.R147C 0.29 deleterious(0) possibly_damaging(0.846) TCGA-BF-A5ES-01 3 38889117 38889117 C T SCN11A Missense_Mutation p.G1482R 0.32 deleterious(0.02) possibly_damaging(0.489) TCGA-BF-A5ES-01 3 39170342 39170342 C T TTC21A Silent p.F612F 0.30 TCGA-BF-A5ES-01 3 44488264 44488264 C A ZNF445 Nonsense_Mutation p.G967* 0.45 TCGA-BF-A5ES-01 3 45811714 45811714 G A SLC6A20 Missense_Mutation p.S362L 0.41 tolerated(0.08) benign(0.15) TCGA-BF-A5ES-01 3 46062801 46062801 G A XCR1 Silent p.F213F 0.34 TCGA-BF-A5ES-01 3 46541939 46541939 G A RTP3 Silent p.Q83Q 0.40 TCGA-BF-A5ES-01 3 46542029 46542029 G A RTP3 Silent p.R113R 0.29 TCGA-BF-A5ES-01 3 47164306 47164306 G A SETD2 Missense_Mutation p.P607L 0.39 tolerated_low_confidence(0.24) benign(0.002) TCGA-BF-A5ES-01 3 49405919 49405919 G A RHOA Silent p.S73S 0.22 TCGA-BF-A5ES-01 3 49405920 49405920 G A RHOA Missense_Mutation p.S73F 0.22 tolerated(0.07) possibly_damaging(0.848) TCGA-BF-A5ES-01 3 49405921 49405921 A G RHOA Missense_Mutation p.S73P 0.23 deleterious(0) probably_damaging(0.996) TCGA-BF-A5ES-01 3 49753129 49753129 C T RNF123 Silent p.F1044F 0.38 TCGA-BF-A5ES-01 3 50151465 50151465 C T RBM5 Missense_Mutation p.S567F 0.27 tolerated(0.09) benign(0.191) TCGA-BF-A5ES-01 3 53159945 53159945 G A RFT1 Silent p.I43I 0.29 TCGA-BF-A5ES-01 3 56330395 56330395 G A ERC2 Silent p.L242L 0.36 TCGA-BF-A5ES-01 3 57489912 57489912 C T DNAH12 Missense_Mutation p.R306K 0.30 tolerated(0.08) benign(0.272) TCGA-BF-A5ES-01 3 69168759 69168759 C T LMOD3 Silent p.R249R 0.35 TCGA-BF-A5ES-01 3 7620725 7620725 C T GRM7 Missense_Mutation p.S711L 0.32 deleterious(0.05) possibly_damaging(0.515) TCGA-BF-A5ES-01 3 89499404 89499404 G A EPHA3 Silent p.L858L 0.38 TCGA-BF-A5ES-01 3 9489407 9489407 C T SETD5 Missense_Mutation p.P607L 0.27 deleterious(0) benign(0.305) TCGA-BF-A5ES-01 4 104084348 104084348 T A CENPE Missense_Mutation p.E596D 0.42 benign(0.11) TCGA-BF-A5ES-01 4 107847008 107847008 C T DKK2 Silent p.K107K 0.30 TCGA-BF-A5ES-01 4 111397834 111397834 G A ENPEP Nonsense_Mutation p.W88* 0.37 TCGA-BF-A5ES-01 4 114824179 114824179 C T ARSJ Missense_Mutation p.G351R 0.23 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 4 139101930 139101930 C T SLC7A11 Missense_Mutation p.M377I 0.20 tolerated(0.17) benign(0.007) TCGA-BF-A5ES-01 4 155287536 155287536 G A DCHS2 Missense_Mutation p.H174Y 0.29 deleterious(0.02) benign(0.002) TCGA-BF-A5ES-01 4 158057999 158057999 C T GLRB Missense_Mutation p.P191S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 4 158254128 158254128 C T GRIA2 Missense_Mutation p.A347V 0.38 tolerated(0.37) probably_damaging(0.999) TCGA-BF-A5ES-01 4 175158598 175158598 C T FBXO8 Missense_Mutation p.D309N 0.27 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 4 178881955 178881955 G A LINC01098 5'UTR 0.48 TCGA-BF-A5ES-01 4 185678236 185678236 G A ACSL1 3'UTR 0.25 TCGA-BF-A5ES-01 4 187454920 187454920 C T MTNR1A Missense_Mutation p.D326N 0.36 tolerated(0.26) benign(0.002) TCGA-BF-A5ES-01 4 187455080 187455080 G A MTNR1A Silent p.I272I 0.29 TCGA-BF-A5ES-01 4 467839 467839 G A ZNF721 Intron 0.32 TCGA-BF-A5ES-01 4 48862917 48862917 T C OCIAD1 3'UTR 0.53 TCGA-BF-A5ES-01 4 514931 514931 C A PIGG Missense_Mutation p.L401I 0.28 deleterious(0.04) benign(0.323) TCGA-BF-A5ES-01 4 55593661 55593661 T C KIT Missense_Mutation p.L576P 0.51 deleterious(0.02) benign(0.249) TCGA-BF-A5ES-01 4 6080691 6080691 C G JAKMIP1 Missense_Mutation p.R426P 0.22 deleterious(0) possibly_damaging(0.606) TCGA-BF-A5ES-01 4 62849222 62849222 C T LPHN3 Missense_Mutation p.S978L 0.40 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 4 69683882 69683882 A G UGT2B10 Missense_Mutation p.K285R 0.25 deleterious(0.02) benign(0.049) TCGA-BF-A5ES-01 4 72332167 72332167 T C SLC4A4 Silent p.L502L 0.35 TCGA-BF-A5ES-01 4 76957206 76957206 G A CXCL11 5'UTR 0.55 TCGA-BF-A5ES-01 4 77283364 77283364 G A CCDC158 Silent p.L645L 0.32 TCGA-BF-A5ES-01 4 80246686 80246686 G A NAA11 Missense_Mutation p.R116W 0.19 tolerated(0.07) benign(0.299) TCGA-BF-A5ES-01 4 89013299 89013299 G A ABCG2 3'UTR 0.50 TCGA-BF-A5ES-01 5 102526579 102526579 C T PPIP5K2 Missense_Mutation p.P1109L 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-A5ES-01 5 13735952 13735952 C T DNAH5 Missense_Mutation p.G3849S 0.19 possibly_damaging(0.855) TCGA-BF-A5ES-01 5 139908859 139908859 C T ANKHD1 Missense_Mutation p.P2110S 0.55 benign(0.029) TCGA-BF-A5ES-01 5 139908860 139908860 C T ANKHD1 Missense_Mutation p.P2110L 0.54 possibly_damaging(0.628) TCGA-BF-A5ES-01 5 140308863 140308863 A T PCDHAC1 Missense_Mutation p.I796F 0.52 tolerated(0.17) benign(0.01) TCGA-BF-A5ES-01 5 141007683 141007683 G A HDAC3 Nonsense_Mutation p.Q255* 0.38 TCGA-BF-A5ES-01 5 14678872 14678872 G A FAM105B Silent p.T104T 0.33 TCGA-BF-A5ES-01 5 148753920 148753920 G A IL17B 3'UTR 0.43 TCGA-BF-A5ES-01 5 167625861 167625861 C T TENM2 Silent p.F968F 0.64 TCGA-BF-A5ES-01 5 167673907 167673907 A G TENM2 Missense_Mutation p.N1988S 0.61 tolerated(0.43) benign(0.041) TCGA-BF-A5ES-01 5 169145661 169145661 G A DOCK2 Silent p.K711K 0.50 TCGA-BF-A5ES-01 5 172353524 172353524 C T ERGIC1 Missense_Mutation p.H165Y 0.24 deleterious(0.03) benign(0.187) TCGA-BF-A5ES-01 5 175528067 175528067 G A FAM153B Missense_Mutation p.E117K 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-BF-A5ES-01 5 176737467 176737467 G A MXD3 Missense_Mutation p.T94I 0.29 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 5 31323526 31323526 C A CDH6 3'UTR 0.33 TCGA-BF-A5ES-01 5 40841643 40841643 C A CARD6 Silent p.L53L 0.27 TCGA-BF-A5ES-01 5 40841644 40841644 C T CARD6 Silent p.L54L 0.26 TCGA-BF-A5ES-01 5 49724043 49724043 G A EMB Missense_Mutation p.P44L 0.30 tolerated(0.17) benign(0) TCGA-BF-A5ES-01 5 54409996 54409996 C T CDC20B 3'UTR 0.24 TCGA-BF-A5ES-01 5 68555675 68555675 G A CDK7 Missense_Mutation p.E147K 0.30 tolerated(0.53) benign(0.113) TCGA-BF-A5ES-01 5 78376656 78376656 G A BHMT2 Silent p.Q135Q 0.16 TCGA-BF-A5ES-01 5 80550922 80550922 G A CKMT2 Silent p.R186R 0.35 TCGA-BF-A5ES-01 5 82948521 82948521 G A HAPLN1 Missense_Mutation p.H75Y 0.48 deleterious(0.05) benign(0.259) TCGA-BF-A5ES-01 5 93076215 93076215 G A POU5F2 3'UTR 0.35 TCGA-BF-A5ES-01 5 93077127 93077127 G A POU5F2 Missense_Mutation p.P48L 0.31 tolerated(0.08) possibly_damaging(0.726) TCGA-BF-A5ES-01 5 95278712 95278712 G A ELL2 Silent p.L63L 0.56 TCGA-BF-A5ES-01 5 96253395 96253395 G A ERAP2 3'UTR 0.38 TCGA-BF-A5ES-01 6 109773724 109773724 G A MICAL1 Silent p.F222F 0.28 TCGA-BF-A5ES-01 6 116441158 116441158 C T COL10A1 3'UTR 0.35 TCGA-BF-A5ES-01 6 116747767 116747767 C T DSE Silent p.V149V 0.42 TCGA-BF-A5ES-01 6 117127662 117127662 G A GPRC6A Silent p.F402F 0.28 TCGA-BF-A5ES-01 6 121768219 121768219 C T GJA1 Missense_Mutation p.R76C 0.42 deleterious(0.03) benign(0.204) TCGA-BF-A5ES-01 6 125583982 125583982 G A TPD52L1 Silent p.T163T 0.41 TCGA-BF-A5ES-01 6 127768260 127768260 G T KIAA0408 Missense_Mutation p.H402N 0.33 deleterious(0.03) possibly_damaging(0.544) TCGA-BF-A5ES-01 6 128134812 128134812 C T THEMIS Missense_Mutation p.S325N 0.26 tolerated(0.16) probably_damaging(0.956) TCGA-BF-A5ES-01 6 130535590 130535590 G A SAMD3 Missense_Mutation p.A54V 0.32 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-BF-A5ES-01 6 133846292 133846292 G A EYA4 Missense_Mutation p.G580E 0.38 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 6 143082665 143082665 C T HIVEP2 Missense_Mutation p.M1852I 0.31 tolerated(0.1) probably_damaging(0.968) TCGA-BF-A5ES-01 6 145079081 145079081 G A UTRN Silent p.P2817P 0.07 TCGA-BF-A5ES-01 6 151152842 151152842 G A PLEKHG1 Silent p.K865K 0.27 TCGA-BF-A5ES-01 6 155597159 155597159 G A CLDN20 Missense_Mutation p.M102I 0.32 deleterious(0.01) possibly_damaging(0.665) TCGA-BF-A5ES-01 6 158497733 158497733 G A SYNJ2 Missense_Mutation p.D790N 0.37 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 6 159146577 159146577 G A SYTL3 Missense_Mutation p.D255N 0.25 tolerated(0.06) benign(0.005) TCGA-BF-A5ES-01 6 16145452 16145452 C T MYLIP Silent p.A384A 0.21 TCGA-BF-A5ES-01 6 169648674 169648674 C T THBS2 Nonsense_Mutation p.W149* 0.28 TCGA-BF-A5ES-01 6 17602916 17602916 A T FAM8A1 Missense_Mutation p.S270C 0.42 tolerated(0.19) benign(0.08) TCGA-BF-A5ES-01 6 28264622 28264622 C T PGBD1 Silent p.A224A 0.24 TCGA-BF-A5ES-01 6 30711784 30711784 G A IER3 Silent p.L134L 0.24 TCGA-BF-A5ES-01 6 31656873 31656873 G A ABHD16A Missense_Mutation p.P369S 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 6 32032746 32032746 C T TNXB Silent p.G2231G 0.30 TCGA-BF-A5ES-01 6 35196464 35196464 G A SCUBE3 Silent p.R94R 0.24 TCGA-BF-A5ES-01 6 36823669 36823669 G A PPIL1 Missense_Mutation p.R141C 0.36 deleterious(0) possibly_damaging(0.74) TCGA-BF-A5ES-01 6 36982788 36982788 G A FGD2 Missense_Mutation p.D335N 0.29 tolerated(0.07) benign(0.342) TCGA-BF-A5ES-01 6 37138791 37138791 C T PIM1 Missense_Mutation p.S75F 0.38 tolerated(0.42) possibly_damaging(0.73) TCGA-BF-A5ES-01 6 38891889 38891889 C A DNAH8 Missense_Mutation p.P3421H 0.29 probably_damaging(0.986) TCGA-BF-A5ES-01 6 40359884 40359884 G A LRFN2 Missense_Mutation p.S723F 0.33 deleterious(0) probably_damaging(0.996) TCGA-BF-A5ES-01 6 41704656 41704656 G A PGC Silent p.F367F 0.26 TCGA-BF-A5ES-01 6 42231304 42231304 C T TRERF1 Silent p.E546E 0.24 TCGA-BF-A5ES-01 6 43006177 43006177 G A CUL7 Missense_Mutation p.P1618L 0.33 tolerated(0.09) benign(0.237) TCGA-BF-A5ES-01 6 43251997 43251997 C A TTBK1 Silent p.P1173P 0.20 TCGA-BF-A5ES-01 6 55142315 55142315 G A HCRTR2 Silent p.R300R 0.28 TCGA-BF-A5ES-01 6 62390829 62390829 G A KHDRBS2 3'UTR 0.59 TCGA-BF-A5ES-01 6 80636063 80636063 G A ELOVL4 Missense_Mutation p.P46S 0.32 deleterious(0.01) possibly_damaging(0.706) TCGA-BF-A5ES-01 6 82911150 82911150 A - IBTK Frame_Shift_Del p.Y927Tfs*4 0.31 TCGA-BF-A5ES-01 6 82950163 82950163 G A IBTK Missense_Mutation p.S14F 0.28 deleterious(0) probably_damaging(0.989) TCGA-BF-A5ES-01 6 83906084 83906084 C T RWDD2A 3'UTR 0.41 TCGA-BF-A5ES-01 6 87966930 87966930 C T ZNF292 Missense_Mutation p.H1195Y 0.35 tolerated(0.12) possibly_damaging(0.635) TCGA-BF-A5ES-01 7 100184221 100184221 C T FBXO24 5'Flank 0.50 TCGA-BF-A5ES-01 7 100551599 100551599 G A MUC3A Missense_Mutation p.S117N 0.33 deleterious(0.02) benign(0.246) TCGA-BF-A5ES-01 7 100841925 100841925 C T MOGAT3 Missense_Mutation p.D159N 0.27 deleterious(0.04) benign(0.219) TCGA-BF-A5ES-01 7 102016727 102016727 C T PRKRIP1 5'UTR 0.15 TCGA-BF-A5ES-01 7 102119343 102119343 C T POLR2J 5'UTR 0.50 TCGA-BF-A5ES-01 7 110763093 110763093 G A LRRN3 Missense_Mutation p.D89N 0.50 tolerated(0.11) benign(0.013) TCGA-BF-A5ES-01 7 111368606 111368606 G A DOCK4 Silent p.P1875P 0.62 TCGA-BF-A5ES-01 7 113558994 113558994 T G PPP1R3A Missense_Mutation p.N20H 0.29 deleterious(0.01) possibly_damaging(0.827) TCGA-BF-A5ES-01 7 11446617 11446617 G A THSD7A Silent p.L1328L 0.59 TCGA-BF-A5ES-01 7 117199609 117199609 C T CFTR Missense_Mutation p.S495F 0.24 deleterious(0) probably_damaging(0.924) TCGA-BF-A5ES-01 7 122261759 122261759 G A CADPS2 Missense_Mutation p.P294S 0.24 deleterious(0) possibly_damaging(0.901) TCGA-BF-A5ES-01 7 134896287 134896287 G A WDR91 5'Flank 0.21 TCGA-BF-A5ES-01 7 137028361 137028361 A G PTN 5'UTR 0.49 TCGA-BF-A5ES-01 7 140156439 140156439 G A MKRN1 Intron 0.33 TCGA-BF-A5ES-01 7 141803203 141803203 C T MGAM Silent p.V1820V 0.18 TCGA-BF-A5ES-01 7 142104302 142104302 G A TRBV6-9 Nonsense_Mutation p.R55* 0.23 TCGA-BF-A5ES-01 7 142168486 142168486 G A TRBV5-4 Silent p.F79F 0.49 TCGA-BF-A5ES-01 7 142651433 142651433 C T KEL Silent p.L254L 0.47 TCGA-BF-A5ES-01 7 143771468 143771468 C T OR2A25 Silent p.S52S 0.46 TCGA-BF-A5ES-01 7 148769059 148769059 G A ZNF786 Missense_Mutation p.R269W 0.36 deleterious(0.01) benign(0.28) TCGA-BF-A5ES-01 7 149500057 149500057 G A SSPO RNA 0.79 TCGA-BF-A5ES-01 7 150698402 150698402 G A NOS3 Silent p.G439G 0.60 TCGA-BF-A5ES-01 7 151711728 151711728 G A GALNTL5 Splice_Site p.X343_splice 0.20 TCGA-BF-A5ES-01 7 154585852 154585852 C T DPP6 Silent p.N400N 0.58 TCGA-BF-A5ES-01 7 154585853 154585853 C T DPP6 Missense_Mutation p.R401W 0.54 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 7 155094475 155094475 C T INSIG1 Silent p.F241F 0.23 TCGA-BF-A5ES-01 7 23792432 23792432 G A STK31 Missense_Mutation p.E372K 0.53 tolerated(0.52) benign(0.012) TCGA-BF-A5ES-01 7 2416644 2416644 G A EIF3B Silent p.K696K 0.47 TCGA-BF-A5ES-01 7 53103927 53103927 G A POM121L12 Missense_Mutation p.G188E 0.45 deleterious(0.03) probably_damaging(0.988) TCGA-BF-A5ES-01 7 5923614 5923614 G A OCM Silent p.G96G 0.17 TCGA-BF-A5ES-01 7 64168449 64168449 T C ZNF107 Silent p.F589F 0.22 TCGA-BF-A5ES-01 7 70228120 70228120 C T AUTS2 Missense_Mutation p.P336L 0.23 deleterious(0.03) benign(0.242) TCGA-BF-A5ES-01 7 70255087 70255087 C T AUTS2 Missense_Mutation p.A962V 0.23 tolerated(0.39) benign(0.009) TCGA-BF-A5ES-01 7 70255207 70255207 C T AUTS2 Missense_Mutation p.A1002V 0.29 tolerated(0.22) benign(0.024) TCGA-BF-A5ES-01 7 76828852 76828852 C T FGL2 Missense_Mutation p.E87K 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-BF-A5ES-01 7 8043646 8043646 C T GLCCI1 Missense_Mutation p.P189L 0.38 tolerated(0.1) possibly_damaging(0.634) TCGA-BF-A5ES-01 7 82997307 82997307 G A SEMA3E Silent p.F641F 0.33 TCGA-BF-A5ES-01 7 86394606 86394606 G A GRM3 Missense_Mutation p.E49K 0.20 tolerated(0.22) possibly_damaging(0.731) TCGA-BF-A5ES-01 7 96318138 96318138 G A SHFM1 3'UTR 0.33 TCGA-BF-A5ES-01 7 99063773 99063773 C T ATP5J2 5'UTR 0.23 TCGA-BF-A5ES-01 8 109796662 109796662 C T TMEM74 Silent p.A222A 0.23 TCGA-BF-A5ES-01 8 113301675 113301675 C T CSMD3 Missense_Mutation p.G3023R 0.30 tolerated(0.06) probably_damaging(0.98) TCGA-BF-A5ES-01 8 113529418 113529418 G A CSMD3 Missense_Mutation p.P1534L 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-BF-A5ES-01 8 11414215 11414215 G A BLK Missense_Mutation p.G274E 0.33 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 8 121326208 121326208 G A COL14A1 Missense_Mutation p.G1498E 0.32 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 8 121561114 121561114 C T SNTB1 Silent p.G407G 0.50 TCGA-BF-A5ES-01 8 124027662 124027662 G A DERL1 3'UTR 0.18 TCGA-BF-A5ES-01 8 124027663 124027663 G A DERL1 3'UTR 0.19 TCGA-BF-A5ES-01 8 139697503 139697503 G A COL22A1 Missense_Mutation p.P972L 0.34 unknown(0) TCGA-BF-A5ES-01 8 145698627 145698627 C T KIFC2 Missense_Mutation p.P771S 0.30 tolerated_low_confidence(0.12) benign(0.029) TCGA-BF-A5ES-01 8 21560317 21560317 C T GFRA2 Silent p.Q406Q 0.48 TCGA-BF-A5ES-01 8 22102652 22102652 C T POLR3D 5'Flank 0.39 TCGA-BF-A5ES-01 8 22442376 22442376 C T PDLIM2 Silent p.S346S 0.34 TCGA-BF-A5ES-01 8 23056901 23056901 C T TNFRSF10A Missense_Mutation p.E298K 0.35 tolerated(0.19) benign(0.288) TCGA-BF-A5ES-01 8 2823297 2823297 C T CSMD1 Missense_Mutation p.A3094T 0.38 possibly_damaging(0.64) TCGA-BF-A5ES-01 8 28574075 28574075 G A EXTL3 Missense_Mutation p.G167S 0.34 tolerated(0.74) benign(0.001) TCGA-BF-A5ES-01 8 3200865 3200865 G A CSMD1 Silent p.F1194F 0.10 TCGA-BF-A5ES-01 8 39785631 39785631 G A IDO1 Missense_Mutation p.G380E 0.23 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ES-01 8 41845068 41845068 G A KAT6A Missense_Mutation p.P205L 0.30 probably_damaging(0.993) TCGA-BF-A5ES-01 8 56436772 56436772 G A XKR4 Missense_Mutation p.E647K 0.38 deleterious(0) probably_damaging(0.981) TCGA-BF-A5ES-01 8 57353859 57353859 T C PENK Missense_Mutation p.K259R 0.32 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 8 57354331 57354331 C T PENK Missense_Mutation p.G102S 0.37 tolerated(0.09) probably_damaging(0.978) TCGA-BF-A5ES-01 8 61765088 61765088 C T CHD7 Missense_Mutation p.R1976C 0.56 probably_damaging(0.995) TCGA-BF-A5ES-01 8 87151792 87151792 G A ATP6V0D2 Missense_Mutation p.E137K 0.31 tolerated(0.16) benign(0.055) TCGA-BF-A5ES-01 8 95142944 95142944 C T CDH17 Missense_Mutation p.G770R 0.48 deleterious(0.02) possibly_damaging(0.703) TCGA-BF-A5ES-01 9 104133271 104133271 C T BAAT Missense_Mutation p.R139Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BF-A5ES-01 9 104312989 104312989 G A RNF20 Silent p.L398L 0.32 TCGA-BF-A5ES-01 9 107331532 107331532 C T OR13C8 Silent p.F28F 0.29 TCGA-BF-A5ES-01 9 109689800 109689800 C T ZNF462 Missense_Mutation p.R1203W 0.34 probably_damaging(0.976) TCGA-BF-A5ES-01 9 119567969 119567969 C T ASTN2 Missense_Mutation p.G729S 0.33 deleterious(0.02) unknown(0) TCGA-BF-A5ES-01 9 123675693 123675693 C T TRAF1 Silent p.K206K 0.33 TCGA-BF-A5ES-01 9 125288947 125288947 A C OR1N1 Missense_Mutation p.F209C 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 9 125391431 125391431 G A OR1B1 Silent p.I128I 0.42 TCGA-BF-A5ES-01 9 125797778 125797778 C T GPR21 Silent p.F311F 0.36 TCGA-BF-A5ES-01 9 130494414 130494414 G A TOR2A Nonsense_Mutation p.Q289* 0.37 TCGA-BF-A5ES-01 9 131038445 131038445 G A SWI5 Silent p.R7R 0.30 TCGA-BF-A5ES-01 9 131733216 131733216 C T NUP188 Silent p.S364S 0.35 TCGA-BF-A5ES-01 9 136379824 136379824 C T TMEM8C Silent p.K200K 0.31 TCGA-BF-A5ES-01 9 137804444 137804444 C T FCN1 Missense_Mutation p.M162I 0.26 tolerated(0.25) benign(0) TCGA-BF-A5ES-01 9 139108496 139108496 C T QSOX2 Missense_Mutation p.D387N 0.31 deleterious(0.04) possibly_damaging(0.829) TCGA-BF-A5ES-01 9 139983450 139983450 C T MAN1B1 Missense_Mutation p.S153L 0.31 tolerated(0.3) benign(0.001) TCGA-BF-A5ES-01 9 43625288 43625288 C T SPATA31A6 Silent p.R1133R 0.40 TCGA-BF-A5ES-01 9 439323 439323 G A DOCK8 Missense_Mutation p.G1720S 0.42 tolerated(0.09) probably_damaging(1) TCGA-BF-A5ES-01 9 4826967 4826967 T C RCL1 Silent p.A106A 0.24 TCGA-BF-A5ES-01 9 4826968 4826968 C T RCL1 Missense_Mutation p.P107S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-A5ES-01 9 4826969 4826969 C T RCL1 Missense_Mutation p.P107L 0.24 deleterious(0.03) possibly_damaging(0.859) TCGA-BF-A5ES-01 9 72741115 72741115 C T MAMDC2 Silent p.F228F 0.46 TCGA-BF-A5ES-01 9 75407160 75407160 G A TMC1 Missense_Mutation p.M486I 0.29 tolerated(0.23) benign(0) TCGA-BF-A5ES-01 9 79966256 79966256 C T VPS13A Missense_Mutation p.S2438F 0.43 tolerated(0.61) benign(0.014) TCGA-BF-A5ES-01 9 84605378 84605378 G A SPATA31D1 Silent p.R93R 0.18 TCGA-BF-A5ES-01 9 84607169 84607169 C T SPATA31D1 Missense_Mutation p.P595L 0.40 deleterious(0) possibly_damaging(0.493) TCGA-BF-A5ES-01 9 94487117 94487117 G A ROR2 Silent p.F553F 0.26 TCGA-BF-A5ES-01 9 95609974 95609974 G A ZNF484 Silent p.L367L 0.23 TCGA-BF-A5ES-01 X 100809068 100809068 T A ARMCX1 Silent p.I385I 0.38 TCGA-BF-A5ES-01 X 101396328 101396328 C T TCEAL6 Splice_Site 0.29 TCGA-BF-A5ES-01 X 101581432 101581432 G A NXF2 3'UTR 0.29 TCGA-BF-A5ES-01 X 109441719 109441719 G A AMMECR1 3'UTR 0.20 TCGA-BF-A5ES-01 X 109937516 109937516 C T CHRDL1 Missense_Mutation p.R218Q 0.34 tolerated(0.2) probably_damaging(0.996) TCGA-BF-A5ES-01 X 115304126 115304126 C T AGTR2 Missense_Mutation p.A198V 0.36 tolerated(0.73) possibly_damaging(0.625) TCGA-BF-A5ES-01 X 118585964 118585964 C T SLC25A43 Intron 0.35 TCGA-BF-A5ES-01 X 118892730 118892730 G A SOWAHD Missense_Mutation p.A34T 0.30 tolerated(0.8) benign(0.003) TCGA-BF-A5ES-01 X 122538698 122538698 G T GRIA3 Missense_Mutation p.G478V 0.37 deleterious(0) probably_damaging(0.998) TCGA-BF-A5ES-01 X 123480591 123480591 C G SH2D1A Missense_Mutation p.D33E 0.27 deleterious(0) probably_damaging(0.997) TCGA-BF-A5ES-01 X 123838992 123838992 G A TENM1 Missense_Mutation p.P296S 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-A5ES-01 X 127185831 127185831 G A ACTRT1 Nonsense_Mutation p.R119* 0.39 TCGA-BF-A5ES-01 X 12939932 12939932 G A TLR8 Missense_Mutation p.G925R 0.26 deleterious(0) probably_damaging(1) TCGA-BF-A5ES-01 X 130413270 130413270 G A IGSF1 Silent p.F564F 0.30 TCGA-BF-A5ES-01 X 130417184 130417184 C T IGSF1 Missense_Mutation p.G241E 0.32 deleterious(0.02) probably_damaging(1) TCGA-BF-A5ES-01 X 134426258 134426258 C T ZNF75D Missense_Mutation p.E185K 0.25 tolerated(0.1) benign(0.021) TCGA-BF-A5ES-01 X 134711275 134711275 T G DDX26B Missense_Mutation p.V644G 0.41 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-BF-A5ES-01 X 134987528 134987528 C T SAGE1 Missense_Mutation p.P144L 0.30 deleterious(0.04) possibly_damaging(0.794) TCGA-BF-A5ES-01 X 135957254 135957254 C T RBMX Missense_Mutation p.E286K 0.34 tolerated(0.12) benign(0.345) TCGA-BF-A5ES-01 X 151283788 151283788 G A RP11-1007I13.4 RNA 0.28 TCGA-BF-A5ES-01 X 152936889 152936889 C T PNCK Intron 0.34 TCGA-BF-A5ES-01 X 153170428 153170428 G A AVPR2 Intron 0.38 TCGA-BF-A5ES-01 X 15349434 15349434 G A PIGA Missense_Mutation p.P207S 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-BF-A5ES-01 X 154065951 154065951 C T F8 Missense_Mutation p.R2326Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-BF-A5ES-01 X 154464595 154464595 C T VBP1 Missense_Mutation p.S157F 0.29 tolerated(0.53) possibly_damaging(0.646) TCGA-BF-A5ES-01 X 154464596 154464596 C T VBP1 Silent p.S157S 0.29 TCGA-BF-A5ES-01 X 17072974 17072974 G A REPS2 Missense_Mutation p.E339K 0.39 deleterious(0.01) possibly_damaging(0.855) TCGA-BF-A5ES-01 X 17745640 17745640 G A NHS Silent p.L1117L 0.36 TCGA-BF-A5ES-01 X 19039231 19039231 G A GPR64 Nonsense_Mutation p.R212* 0.38 TCGA-BF-A5ES-01 X 19764529 19764529 G A SH3KBP1 Missense_Mutation p.L65F 0.31 tolerated(0.29) benign(0.063) TCGA-BF-A5ES-01 X 29973736 29973736 C T IL1RAPL1 Silent p.Y630Y 0.52 TCGA-BF-A5ES-01 X 3235883 3235883 C T MXRA5 Missense_Mutation p.V1947M 0.46 deleterious(0.02) possibly_damaging(0.791) TCGA-BF-A5ES-01 X 47836655 47836655 G A ZNF182 Silent p.L277L 0.37 TCGA-BF-A5ES-01 X 51150977 51150977 C T CXorf67 Missense_Mutation p.P370L 0.40 deleterious(0) benign(0.437) TCGA-BF-A5ES-01 X 54020203 54020203 G A PHF8 Missense_Mutation p.S522F 0.35 deleterious(0.02) possibly_damaging(0.641) TCGA-BF-A5ES-01 X 54784349 54784349 T C ITIH6 Missense_Mutation p.T720A 0.38 deleterious(0.03) benign(0.078) TCGA-BF-A5ES-01 X 55033083 55033083 T C APEX2 Missense_Mutation p.F258L 0.24 deleterious(0.01) possibly_damaging(0.678) TCGA-BF-A5ES-01 X 5821513 5821513 G A NLGN4X Silent p.F402F 0.35 TCGA-BF-A5ES-01 X 67316753 67316753 G A OPHN1 Nonsense_Mutation p.Q549* 0.28 TCGA-BF-A5ES-01 X 69262190 69262190 C T AWAT2 Missense_Mutation p.D232N 0.15 tolerated(1) benign(0.009) TCGA-BF-A5ES-01 X 71350193 71350193 C T RGAG4 Missense_Mutation p.E400K 0.31 tolerated_low_confidence(0.63) unknown(0) TCGA-BF-A5ES-01 X 71812989 71812989 C T PHKA1 Missense_Mutation p.G1070R 0.36 deleterious(0) probably_damaging(0.989) TCGA-BF-A5ES-01 X 71887258 71887258 G A PHKA1 Silent p.I228I 0.30 TCGA-BF-A5ES-01 X 77243765 77243765 A T ATP7A Missense_Mutation p.I50F 0.38 tolerated(0.13) possibly_damaging(0.766) TCGA-BF-A5ES-01 X 78616858 78616858 G A ITM2A Missense_Mutation p.S224F 0.30 deleterious(0) possibly_damaging(0.723) TCGA-BF-A5ES-01 X 8536399 8536399 G A KAL1 Silent p.L361L 0.38 TCGA-BF-A5ES-01 X 8536400 8536400 G A KAL1 Silent p.I360I 0.39 TCGA-BF-A5ES-01 X 85906170 85906170 G A DACH2 Missense_Mutation p.G258S 0.23 deleterious(0.01) probably_damaging(1) TCGA-BF-A5ES-01 X 86887233 86887233 G A KLHL4 Missense_Mutation p.D450N 0.38 tolerated(0.14) probably_damaging(0.999) TCGA-BF-A9VF-01 10 11908637 11908637 C T PROSER2 Silent p.C82C 0.88 TCGA-BF-A9VF-01 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.87 deleterious(0) possibly_damaging(0.636) TCGA-BF-A9VF-01 10 44053444 44053444 G A ZNF239 Silent p.S28S 0.44 TCGA-BF-A9VF-01 10 44053445 44053445 G A ZNF239 Missense_Mutation p.S28F 0.45 deleterious(0.04) benign(0.001) TCGA-BF-A9VF-01 10 55583112 55583112 G A PCDH15 Silent p.F1460F 0.39 TCGA-BF-A9VF-01 10 71700759 71700759 G A COL13A1 Missense_Mutation p.D621N 0.48 deleterious(0.03) probably_damaging(0.989) TCGA-BF-A9VF-01 10 75525229 75525229 C T SEC24C Silent p.D416D 0.37 TCGA-BF-A9VF-01 10 91163006 91163006 C T IFIT1 Missense_Mutation p.A325V 0.38 deleterious(0.04) benign(0.323) TCGA-BF-A9VF-01 11 7064875 7064875 C T NLRP14 Nonsense_Mutation p.R540* 0.90 TCGA-BF-A9VF-01 11 72145367 72145367 G A CLPB Missense_Mutation p.A51V 0.68 deleterious_low_confidence(0) benign(0.297) TCGA-BF-A9VF-01 11 73809191 73809191 G A C2CD3 Nonsense_Mutation p.R948* 0.33 TCGA-BF-A9VF-01 12 101576592 101576592 G A SLC5A8 Missense_Mutation p.S385F 0.44 deleterious(0) probably_damaging(0.977) TCGA-BF-A9VF-01 12 104473326 104473326 C T HCFC2 Missense_Mutation p.H193Y 0.45 deleterious(0) possibly_damaging(0.885) TCGA-BF-A9VF-01 12 108926078 108926078 G A SART3 Missense_Mutation p.A530V 0.33 tolerated(1) possibly_damaging(0.463) TCGA-BF-A9VF-01 12 13906442 13906442 G A GRIN2B Silent p.F273F 0.56 TCGA-BF-A9VF-01 12 14976535 14976535 A C C12orf60 Missense_Mutation p.L222F 0.28 deleterious(0.02) probably_damaging(0.94) TCGA-BF-A9VF-01 12 14976536 14976536 G A C12orf60 Missense_Mutation p.E223K 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-BF-A9VF-01 12 32949197 32949197 G A PKP2 Missense_Mutation p.P779S 0.41 deleterious(0) possibly_damaging(0.847) TCGA-BF-A9VF-01 12 5153851 5153851 C T KCNA5 Nonsense_Mutation p.Q180* 0.36 TCGA-BF-A9VF-01 12 56216503 56216503 C T DNAJC14 Missense_Mutation p.D550N 0.34 tolerated(0.12) probably_damaging(0.927) TCGA-BF-A9VF-01 12 77216238 77216238 A G ZDHHC17 Missense_Mutation p.N275S 0.67 tolerated(0.29) possibly_damaging(0.748) TCGA-BF-A9VF-01 15 24924348 24924348 G A NPAP1 Missense_Mutation p.G1112R 0.62 tolerated_low_confidence(0.2) probably_damaging(0.996) TCGA-BF-A9VF-01 15 33873720 33873720 C T RYR3 Silent p.A483A 0.26 TCGA-BF-A9VF-01 15 41488141 41488141 C T EXD1 Missense_Mutation p.R152K 0.28 tolerated(0.3) benign(0.013) TCGA-BF-A9VF-01 15 65871768 65871768 C T VWA9 Missense_Mutation p.G455E 0.21 deleterious(0.04) benign(0.079) TCGA-BF-A9VF-01 15 65892226 65892226 C T VWA9 Silent p.G67G 0.22 TCGA-BF-A9VF-01 15 97327421 97327421 C T SPATA8 Missense_Mutation p.P43L 0.72 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-BF-A9VF-01 16 1779191 1779191 G A MAPK8IP3 Silent p.L164L 0.30 TCGA-BF-A9VF-01 16 20043684 20043684 G A GPR139 Silent p.T145T 0.60 TCGA-BF-A9VF-01 16 4024700 4024700 G A ADCY9 Missense_Mutation p.T947I 0.58 tolerated(0.31) benign(0) TCGA-BF-A9VF-01 16 50249989 50249989 C T PAPD5 Silent p.D256D 0.95 TCGA-BF-A9VF-01 16 68011711 68011711 G A DPEP3 Missense_Mutation p.R285C 0.72 deleterious(0.02) benign(0.347) TCGA-BF-A9VF-01 16 68011712 68011712 G A DPEP3 Silent p.N284N 0.73 TCGA-BF-A9VF-01 17 10323468 10323468 C T MYH8 Missense_Mutation p.R26Q 0.45 tolerated(0.09) probably_damaging(0.999) TCGA-BF-A9VF-01 17 18047840 18047840 C T MYO15A Silent p.P2069P 0.45 TCGA-BF-A9VF-01 17 263374 263374 C T C17orf97 Missense_Mutation p.P247L 0.56 tolerated_low_confidence(0.05) benign(0.012) TCGA-BF-A9VF-01 17 39623238 39623238 C T KRT32 Missense_Mutation p.V114M 0.40 deleterious(0) probably_damaging(0.999) TCGA-BF-A9VF-01 17 42636532 42636532 C T FZD2 Silent p.R492R 0.51 TCGA-BF-A9VF-01 17 44408910 44408910 C T LRRC37A Missense_Mutation p.P1423S 0.18 tolerated(1) benign(0.003) TCGA-BF-A9VF-01 18 32409044 32409044 C T DTNA Intron 0.82 TCGA-BF-A9VF-01 19 19637067 19637067 C T NDUFA13 Silent p.R57R 0.41 TCGA-BF-A9VF-01 19 33600653 33600653 C T GPATCH1 Missense_Mutation p.S439F 0.50 deleterious(0) possibly_damaging(0.873) TCGA-BF-A9VF-01 19 33642157 33642157 G A WDR88 Silent p.L250L 0.44 TCGA-BF-A9VF-01 19 36046363 36046363 G A ATP4A Silent p.I712I 0.42 TCGA-BF-A9VF-01 19 36350391 36350391 G A KIRREL2 Silent p.L177L 0.39 TCGA-BF-A9VF-01 19 37488393 37488393 C T ZNF568 Silent p.F536F 0.53 TCGA-BF-A9VF-01 19 38980752 38980752 C T RYR1 Silent p.L1951L 0.47 TCGA-BF-A9VF-01 19 42636586 42636586 G A POU2F2 5'Flank 0.47 TCGA-BF-A9VF-01 19 49143496 49143496 G A CA11 Silent p.F109F 0.41 TCGA-BF-A9VF-01 19 51020755 51020755 C T LRRC4B 3'UTR 0.33 TCGA-BF-A9VF-01 19 55221897 55221897 C T AC098784.2 3'Flank 0.59 TCGA-BF-A9VF-01 19 55652319 55652319 G A TNNT1 Missense_Mutation p.R107W 0.57 deleterious(0) probably_damaging(1) TCGA-BF-A9VF-01 19 55816189 55816189 C T BRSK1 Missense_Mutation p.P540S 0.56 tolerated(0.68) possibly_damaging(0.641) TCGA-BF-A9VF-01 19 9024917 9024917 C T MUC16 Silent p.R12315R 0.39 TCGA-BF-A9VF-01 19 9087063 9087063 G A MUC16 Silent p.S1584S 0.44 TCGA-BF-A9VF-01 1 104162354 104162354 A T AMY2A Missense_Mutation p.N231I 0.18 deleterious(0) possibly_damaging(0.562) TCGA-BF-A9VF-01 1 152081094 152081094 G A TCHH Silent p.F1533F 0.27 TCGA-BF-A9VF-01 1 157504657 157504657 G A FCRL5 Silent p.T476T 0.56 TCGA-BF-A9VF-01 1 160181468 160181468 G A PEA15 Nonsense_Mutation p.W45* 0.29 TCGA-BF-A9VF-01 1 160181469 160181469 G A PEA15 Nonsense_Mutation p.W45* 0.30 TCGA-BF-A9VF-01 1 19180795 19180795 G A TAS1R2 Missense_Mutation p.S390F 0.32 deleterious(0) possibly_damaging(0.89) TCGA-BF-A9VF-01 1 197297622 197297622 T C CRB1 Silent p.D47D 0.33 TCGA-BF-A9VF-01 1 202531972 202531972 C T PPP1R12B Silent p.A858A 0.59 TCGA-BF-A9VF-01 1 29344905 29344905 C T EPB41 Nonsense_Mutation p.Q359* 0.46 TCGA-BF-A9VF-01 1 67154840 67154840 C T SGIP1 Missense_Mutation p.S442F 0.42 deleterious(0.03) probably_damaging(0.962) TCGA-BF-A9VF-01 1 67154841 67154841 C T SGIP1 Silent p.S442S 0.42 TCGA-BF-A9VF-01 21 45679547 45679547 G A DNMT3L Silent p.L67L 0.36 TCGA-BF-A9VF-01 21 47551972 47551972 G A COL6A2 Missense_Mutation p.V856M 0.40 deleterious(0) possibly_damaging(0.798) TCGA-BF-A9VF-01 22 22556286 22556286 G A IGLV11-55 Missense_Mutation p.G34R 0.44 deleterious(0.01) possibly_damaging(0.896) TCGA-BF-A9VF-01 22 39445500 39445500 C T APOBEC3F Missense_Mutation p.R213W 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-A9VF-01 22 43089459 43089459 C T A4GALT Missense_Mutation p.E167K 0.50 deleterious(0) possibly_damaging(0.905) TCGA-BF-A9VF-01 2 113780158 113780158 G A IL36B 3'UTR 0.33 TCGA-BF-A9VF-01 2 135621159 135621159 C T ACMSD Silent p.N148N 0.53 TCGA-BF-A9VF-01 2 138030231 138030231 C T THSD7B Missense_Mutation p.R799W 0.27 deleterious(0) possibly_damaging(0.835) TCGA-BF-A9VF-01 2 178762875 178762875 C T PDE11A Silent p.E404E 0.46 TCGA-BF-A9VF-01 2 213872104 213872104 C T IKZF2 Missense_Mutation p.G521R 0.39 deleterious(0) probably_damaging(1) TCGA-BF-A9VF-01 2 234652376 234652376 C T UGT1A10 Intron 0.46 TCGA-BF-A9VF-01 2 71043645 71043645 C T CLEC4F Missense_Mutation p.E290K 0.47 tolerated(0.31) benign(0.079) TCGA-BF-A9VF-01 2 74044087 74044087 G A C2orf78 Missense_Mutation p.E913K 0.23 deleterious(0) benign(0.407) TCGA-BF-A9VF-01 2 79385836 79385836 C T REG3A Missense_Mutation p.A46T 0.46 deleterious(0.04) benign(0.06) TCGA-BF-A9VF-01 2 85097805 85097805 G A TRABD2A Silent p.P71P 0.69 TCGA-BF-A9VF-01 2 86790475 86790475 G A CHMP3 Intron 0.44 TCGA-BF-A9VF-01 2 89399462 89399462 G A IGKV1-16 Missense_Mutation p.P81S 0.49 deleterious(0.03) benign(0.446) TCGA-BF-A9VF-01 3 132221182 132221182 C T DNAJC13 Missense_Mutation p.A1529V 0.41 deleterious(0) benign(0.318) TCGA-BF-A9VF-01 3 137802964 137802964 C T DZIP1L Silent p.Q398Q 0.29 TCGA-BF-A9VF-01 3 14949214 14949214 G A FGD5 Missense_Mutation p.G1111E 0.47 deleterious(0) probably_damaging(1) TCGA-BF-A9VF-01 3 15686848 15686848 C T BTD Silent p.I495I 0.49 TCGA-BF-A9VF-01 3 185191480 185191480 G A MAP3K13 Silent p.E787E 0.44 TCGA-BF-A9VF-01 3 197598333 197598333 A G LRCH3 Silent p.V710V 0.43 TCGA-BF-A9VF-01 3 48419815 48419815 G A FBXW12 Missense_Mutation p.M138I 0.31 tolerated(0.32) benign(0.107) TCGA-BF-A9VF-01 3 51308266 51308266 C T DOCK3 Silent p.F792F 0.33 TCGA-BF-A9VF-01 3 67054142 67054142 G A KBTBD8 Missense_Mutation p.E251K 0.40 tolerated(0.45) benign(0.004) TCGA-BF-A9VF-01 3 98109578 98109578 G A OR5K3 Silent p.L23L 0.49 TCGA-BF-A9VF-01 4 1235212 1235212 G A CTBP1 Intron 0.43 TCGA-BF-A9VF-01 4 1235213 1235213 G A CTBP1 Intron 0.45 TCGA-BF-A9VF-01 4 154502668 154502668 A G KIAA0922 Missense_Mutation p.H283R 0.48 deleterious(0.03) possibly_damaging(0.642) TCGA-BF-A9VF-01 4 158224768 158224768 T G GRIA2 Missense_Mutation p.N98K 0.45 deleterious(0.02) probably_damaging(1) TCGA-BF-A9VF-01 4 160251565 160251565 T G RAPGEF2 Missense_Mutation p.L300W 0.49 deleterious(0) probably_damaging(1) TCGA-BF-A9VF-01 4 187629946 187629946 G A FAT1 Nonsense_Mutation p.Q346* 0.49 TCGA-BF-A9VF-01 4 1980590 1980590 A G WHSC1 Missense_Mutation p.K1351R 0.40 tolerated_low_confidence(0.44) unknown(0) TCGA-BF-A9VF-01 4 3432581 3432581 C T RGS12 Missense_Mutation p.A1338V 0.38 deleterious(0) possibly_damaging(0.663) TCGA-BF-A9VF-01 4 69533768 69533768 G A UGT2B15 Missense_Mutation p.P288L 0.40 deleterious(0.02) benign(0.281) TCGA-BF-A9VF-01 4 69696495 69696495 C T UGT2B10 Silent p.F495F 0.37 TCGA-BF-A9VF-01 4 82058637 82058637 C T PRKG2 Splice_Site p.X515_splice 0.54 TCGA-BF-A9VF-01 4 87732201 87732203 TGA GG PTPN13 Frame_Shift_Del p.F2439Lfs*10 0.12 TCGA-BF-A9VF-01 5 169533087 169533087 C T FOXI1 Silent p.P42P 1.00 TCGA-BF-A9VF-01 5 23510054 23510054 C T PRDM9 Silent p.F73F 0.79 TCGA-BF-A9VF-01 6 132910854 132910854 G - TAAR5 5'UTR 0.44 TCGA-BF-A9VF-01 6 15497029 15497029 C T JARID2 Missense_Mutation p.R525C 0.40 deleterious(0.04) possibly_damaging(0.634) TCGA-BF-A9VF-01 6 167786682 167786682 G A TCP10 Missense_Mutation p.P319L 0.39 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-BF-A9VF-01 6 51890842 51890842 G T PKHD1 Missense_Mutation p.Q1256K 0.26 tolerated(0.92) benign(0.098) TCGA-BF-A9VF-01 7 100686452 100686452 C T MUC17 Missense_Mutation p.P3919S 0.24 benign(0) TCGA-BF-A9VF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.70 deleterious(0) probably_damaging(0.967) TCGA-BF-A9VF-01 7 143047677 143047677 C T CLCN1 Missense_Mutation p.S842L 0.60 deleterious(0) possibly_damaging(0.489) TCGA-BF-A9VF-01 7 151573737 151573737 C T PRKAG2 5'UTR 0.69 TCGA-BF-A9VF-01 7 151573738 151573738 C T PRKAG2 5'UTR 0.68 TCGA-BF-A9VF-01 7 151970850 151970850 G A KMT2C Nonsense_Mutation p.Q318* 0.07 TCGA-BF-A9VF-01 8 100587980 100587980 A C VPS13B Missense_Mutation p.K1707Q 0.90 tolerated(0.14) probably_damaging(0.95) TCGA-BF-A9VF-01 9 121976078 121976078 G A BRINP1 Intron 0.76 TCGA-BF-A9VF-01 9 130914472 130914472 G A LCN2 Silent p.K162K 0.71 TCGA-BF-A9VF-01 9 131329091 131329091 C T SPTAN1 Silent p.D24D 0.82 TCGA-BF-A9VF-01 9 77365588 77365588 C T TRPM6 Silent p.R1683R 0.85 TCGA-BF-A9VF-01 9 84530809 84530809 A C SPATA31D5P RNA 0.84 TCGA-BF-A9VF-01 X 63410746 63410746 C A AMER1 Silent p.V807V 0.46 TCGA-BF-A9VF-01 X 65476034 65476034 G A HEPH Missense_Mutation p.E974K 0.96 deleterious(0) probably_damaging(0.945) TCGA-BF-A9VF-01 X 84520255 84520255 G A ZNF711 Missense_Mutation p.D304N 0.94 tolerated(0.06) probably_damaging(0.988) TCGA-BF-A9VF-01 Y 16941951 16941951 G A NLGN4Y Missense_Mutation p.D385N 0.90 tolerated(0.08) probably_damaging(0.98) TCGA-BF-AAOU-01 10 101455854 101455854 C T ENTPD7 Silent p.L329L 0.44 TCGA-BF-AAOU-01 10 101715976 101715976 G A DNMBP Missense_Mutation p.P419S 0.27 tolerated_low_confidence(0.05) benign(0.043) TCGA-BF-AAOU-01 10 115922525 115922525 G A C10orf118 Missense_Mutation p.S168F 0.44 deleterious(0.01) probably_damaging(0.914) TCGA-BF-AAOU-01 10 135182446 135182446 G A ECHS1 Silent p.I165I 0.33 TCGA-BF-AAOU-01 10 21108443 21108443 G A NEBL Silent p.L655L 0.45 TCGA-BF-AAOU-01 10 24802301 24802301 C T KIAA1217 Silent p.V705V 0.50 TCGA-BF-AAOU-01 10 30316655 30316655 C T KIAA1462 Missense_Mutation p.G808S 0.46 tolerated(0.23) possibly_damaging(0.652) TCGA-BF-AAOU-01 10 387239 387239 G A DIP2C Missense_Mutation p.R1162C 0.31 deleterious(0) probably_damaging(0.987) TCGA-BF-AAOU-01 10 49618147 49618147 C T MAPK8 Missense_Mutation p.S129F 0.46 deleterious(0) probably_damaging(0.995) TCGA-BF-AAOU-01 11 102743661 102743661 G A MMP12 RNA 0.36 TCGA-BF-AAOU-01 11 105781272 105781272 G A GRIA4 Splice_Site p.X423_splice 0.52 TCGA-BF-AAOU-01 11 108383913 108383913 G A EXPH5 Missense_Mutation p.S774F 0.41 deleterious(0.01) probably_damaging(0.939) TCGA-BF-AAOU-01 11 113235728 113235728 C A TTC12 Missense_Mutation p.A663D 0.48 tolerated(0.16) benign(0.039) TCGA-BF-AAOU-01 11 113235729 113235729 C T TTC12 Silent p.A663A 0.48 TCGA-BF-AAOU-01 11 117064600 117064600 C T SIDT2 Missense_Mutation p.P748L 0.48 deleterious(0) possibly_damaging(0.608) TCGA-BF-AAOU-01 11 27390629 27390629 G A LGR4 Silent p.F547F 0.43 TCGA-BF-AAOU-01 11 35282412 35282412 T A SLC1A2 3'UTR 0.43 TCGA-BF-AAOU-01 11 55595541 55595541 C T OR5L2 Missense_Mutation p.P283S 0.35 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOU-01 11 55889918 55889918 G A OR8H3 Missense_Mutation p.V24I 0.42 tolerated(0.58) benign(0) TCGA-BF-AAOU-01 11 55944702 55944702 C T OR5J2 Silent p.S203S 0.37 TCGA-BF-AAOU-01 11 56510696 56510696 G A OR9G4 Missense_Mutation p.P198S 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 11 60975084 60975084 C T PGA3 Silent p.V151V 0.13 TCGA-BF-AAOU-01 11 61081116 61081116 G A DDB1 Missense_Mutation p.R642C 0.53 deleterious(0) possibly_damaging(0.817) TCGA-BF-AAOU-01 11 62286124 62286124 G A AHNAK Silent p.V5255V 0.43 TCGA-BF-AAOU-01 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.32 TCGA-BF-AAOU-01 11 6650046 6650046 C T DCHS1 Missense_Mutation p.R1726K 0.38 tolerated(0.14) benign(0.001) TCGA-BF-AAOU-01 11 72028240 72028240 C A CLPB Nonsense_Mutation p.E330* 0.46 TCGA-BF-AAOU-01 11 73620623 73620623 C T PAAF1 Missense_Mutation p.P238S 0.40 tolerated(0.14) probably_damaging(0.996) TCGA-BF-AAOU-01 11 73814519 73814519 G A C2CD3 Missense_Mutation p.P746L 0.37 tolerated(0.07) benign(0.073) TCGA-BF-AAOU-01 11 8132255 8132255 C T RIC3 Missense_Mutation p.G367D 0.43 deleterious_low_confidence(0.02) benign(0.046) TCGA-BF-AAOU-01 12 111744725 111744725 G A CUX2 Missense_Mutation p.D287N 0.52 deleterious(0.02) benign(0.027) TCGA-BF-AAOU-01 12 112167638 112167638 C T ACAD10 Silent p.T455T 0.41 TCGA-BF-AAOU-01 12 113730826 113730826 C T TPCN1 Missense_Mutation p.S806F 0.48 tolerated(0.05) benign(0.35) TCGA-BF-AAOU-01 12 113730827 113730827 C T TPCN1 Silent p.S806S 0.48 TCGA-BF-AAOU-01 12 113906076 113906076 G T LHX5 Silent p.G177G 0.45 TCGA-BF-AAOU-01 12 123186668 123186668 G A HCAR2 3'UTR 0.26 TCGA-BF-AAOU-01 12 129558931 129558931 G A TMEM132D Missense_Mutation p.A930V 0.54 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOU-01 12 14943488 14943488 G A WBP11 Missense_Mutation p.A404V 0.31 tolerated_low_confidence(1) unknown(0) TCGA-BF-AAOU-01 12 21229385 21229385 G T SLCO1B7 Splice_Site p.X536_splice 0.16 TCGA-BF-AAOU-01 12 21964989 21964989 G A ABCC9 Missense_Mutation p.S1402F 0.44 deleterious(0) possibly_damaging(0.694) TCGA-BF-AAOU-01 12 25380271 25380271 C T KRAS Missense_Mutation p.E63K 0.28 deleterious(0) possibly_damaging(0.898) TCGA-BF-AAOU-01 12 2786429 2786429 G A CACNA1C Intron 0.36 TCGA-BF-AAOU-01 12 2786446 2786446 C T CACNA1C Intron 0.38 TCGA-BF-AAOU-01 12 31135530 31135530 G A TSPAN11 Missense_Mutation p.E174K 0.50 tolerated(0.18) benign(0.05) TCGA-BF-AAOU-01 12 53012219 53012219 G A KRT73 Silent p.S30S 0.43 TCGA-BF-AAOU-01 12 54059123 54059123 G A ATP5G2 Missense_Mutation p.A191V 0.44 deleterious(0.04) possibly_damaging(0.69) TCGA-BF-AAOU-01 12 55367343 55367343 G A TESPA1 Intron 0.50 TCGA-BF-AAOU-01 12 55641557 55641557 C T OR6C74 Silent p.L162L 0.60 TCGA-BF-AAOU-01 12 68716934 68716934 A G MDM1 Silent p.G240G 0.58 TCGA-BF-AAOU-01 12 6925272 6925272 G A CD4 Missense_Mutation p.E220K 0.44 tolerated(0.19) benign(0.21) TCGA-BF-AAOU-01 12 7640676 7640676 C T CD163 Silent p.R476R 0.56 TCGA-BF-AAOU-01 12 7947809 7947809 C T NANOG 3'UTR 0.28 TCGA-BF-AAOU-01 12 99898353 99898353 G A ANKS1B Missense_Mutation p.P447S 0.75 tolerated(0.78) benign(0.052) TCGA-BF-AAOU-01 13 23898614 23898614 G A SGCG Silent p.G270G 0.31 TCGA-BF-AAOU-01 13 26788544 26788544 C G RNF6 Missense_Mutation p.G492A 0.28 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOU-01 13 29287571 29287571 G A SLC46A3 Silent p.F102F 0.11 TCGA-BF-AAOU-01 13 98673321 98673321 G T IPO5 Missense_Mutation p.M1065I 0.26 tolerated(0.4) benign(0.001) TCGA-BF-AAOU-01 14 101418241 101418241 A C SNORD114-2 RNA 0.27 TCGA-BF-AAOU-01 14 107048837 107048837 C T IGHV3-53 Silent p.G61G 0.18 TCGA-BF-AAOU-01 14 20296404 20296404 C A OR4N2 Missense_Mutation p.P266Q 0.38 deleterious(0) benign(0.12) TCGA-BF-AAOU-01 14 23870160 23870160 C T MYH6 Missense_Mutation p.G390R 0.26 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOU-01 14 23882033 23882033 C T MYH7 3'UTR 0.25 TCGA-BF-AAOU-01 14 23888460 23888460 G A MYH7 Nonsense_Mutation p.Q1300* 0.35 TCGA-BF-AAOU-01 14 73238598 73238598 G A DPF3 Silent p.L12L 0.41 TCGA-BF-AAOU-01 14 75248725 75248725 C T YLPM1 Missense_Mutation p.S660L 0.17 possibly_damaging(0.519) TCGA-BF-AAOU-01 14 75248801 75248801 C T YLPM1 Silent p.Y685Y 0.31 TCGA-BF-AAOU-01 14 75330031 75330031 C T PROX2 Silent p.G169G 0.27 TCGA-BF-AAOU-01 14 77275926 77275926 T A ANGEL1 Missense_Mutation p.E42V 0.17 deleterious(0.02) possibly_damaging(0.748) TCGA-BF-AAOU-01 14 78170732 78170732 T A ALKBH1 Missense_Mutation p.Y91F 0.30 tolerated(0.34) benign(0.012) TCGA-BF-AAOU-01 14 94394631 94394631 G A FAM181A Silent p.V62V 0.28 TCGA-BF-AAOU-01 15 23931842 23931842 C T NDN Missense_Mutation p.E175K 0.24 deleterious(0.01) possibly_damaging(0.772) TCGA-BF-AAOU-01 15 25415782 25415782 C T SNORD115-3 5'Flank 0.23 TCGA-BF-AAOU-01 15 41188263 41188263 G A VPS18 Silent p.K73K 0.28 TCGA-BF-AAOU-01 15 41624474 41624474 C T OIP5 Missense_Mutation p.D96N 0.15 tolerated(0.2) benign(0.025) TCGA-BF-AAOU-01 15 65686885 65686885 G A IGDCC4 Silent p.V526V 0.31 TCGA-BF-AAOU-01 15 68628086 68628086 G T ITGA11 Silent p.T458T 0.31 TCGA-BF-AAOU-01 15 68628088 68628088 T A ITGA11 Missense_Mutation p.T458S 0.29 tolerated(0.13) benign(0.014) TCGA-BF-AAOU-01 15 70949454 70949454 C T UACA Missense_Mutation p.E1398K 0.13 deleterious(0) probably_damaging(0.989) TCGA-BF-AAOU-01 15 81427689 81427689 C T C15orf26 Missense_Mutation p.L50F 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-BF-AAOU-01 15 89400288 89400288 C T ACAN Missense_Mutation p.P1491L 0.26 deleterious(0) possibly_damaging(0.642) TCGA-BF-AAOU-01 15 91293133 91293133 C T BLM Missense_Mutation p.S212F 0.40 deleterious(0.04) benign(0.009) TCGA-BF-AAOU-01 16 15690703 15690703 G A KIAA0430 Silent p.I1692I 0.27 TCGA-BF-AAOU-01 16 17352852 17352852 G A XYLT1 Silent p.P302P 0.17 TCGA-BF-AAOU-01 16 17352854 17352854 G A XYLT1 Missense_Mutation p.P302S 0.18 deleterious(0.04) benign(0.046) TCGA-BF-AAOU-01 16 17352855 17352855 G A XYLT1 Silent p.C301C 0.18 TCGA-BF-AAOU-01 16 18434463 18434463 G A NPIPA8 5'Flank 0.38 TCGA-BF-AAOU-01 16 19514700 19514700 C T GDE1 3'UTR 0.39 TCGA-BF-AAOU-01 16 21216882 21216882 C T ZP2 Nonsense_Mutation p.W184* 0.28 TCGA-BF-AAOU-01 16 21730756 21730756 G A OTOA Missense_Mutation p.M579I 0.27 deleterious(0.02) possibly_damaging(0.485) TCGA-BF-AAOU-01 16 24231309 24231309 G A PRKCB 3'UTR 0.29 TCGA-BF-AAOU-01 16 24803121 24803121 A G TNRC6A Missense_Mutation p.E1053G 0.25 tolerated(0.21) benign(0.006) TCGA-BF-AAOU-01 16 27777731 27777731 C T KIAA0556 Missense_Mutation p.A1304V 0.30 tolerated(0.09) possibly_damaging(0.565) TCGA-BF-AAOU-01 16 31388187 31388187 G A ITGAX Nonsense_Mutation p.W859* 0.28 TCGA-BF-AAOU-01 16 31476341 31476341 C T ARMC5 Intron 0.18 TCGA-BF-AAOU-01 16 4744977 4744977 G A NUDT16L1 Missense_Mutation p.V145I 0.20 deleterious(0) benign(0.305) TCGA-BF-AAOU-01 16 49430522 49430522 G A C16orf78 Missense_Mutation p.E195K 0.38 deleterious(0) possibly_damaging(0.558) TCGA-BF-AAOU-01 16 49670253 49670253 C T ZNF423 Missense_Mutation p.R937Q 0.26 tolerated(0.26) benign(0.177) TCGA-BF-AAOU-01 16 51174713 51174713 C T SALL1 Missense_Mutation p.E474K 0.28 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 16 51174921 51174921 G A SALL1 Silent p.S404S 0.26 TCGA-BF-AAOU-01 16 52484234 52484234 G A TOX3 Silent p.S211S 0.19 TCGA-BF-AAOU-01 16 55519334 55519334 G A MMP2 Missense_Mutation p.G218D 0.21 deleterious(0) probably_damaging(0.984) TCGA-BF-AAOU-01 16 64984778 64984778 C T CDH11 Missense_Mutation p.D596N 0.16 deleterious(0.05) benign(0.005) TCGA-BF-AAOU-01 16 67645173 67645173 C T CTCF Silent p.G146G 0.30 TCGA-BF-AAOU-01 16 70908748 70908748 G A HYDIN Silent p.I3544I 0.35 TCGA-BF-AAOU-01 16 72158722 72158722 C T PMFBP1 Missense_Mutation p.E845K 0.31 tolerated(0.87) benign(0.117) TCGA-BF-AAOU-01 16 72993646 72993646 G A ZFHX3 Silent p.I133I 0.36 TCGA-BF-AAOU-01 16 84229576 84229576 G A ADAD2 Nonsense_Mutation p.W485* 0.38 TCGA-BF-AAOU-01 16 84256286 84256286 C T KCNG4 Missense_Mutation p.R366H 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOU-01 17 10427837 10427837 G A MYH2 Silent p.I1707I 0.23 TCGA-BF-AAOU-01 17 10440629 10440629 C T MYH2 Silent p.E606E 0.20 TCGA-BF-AAOU-01 17 11725780 11725780 G A DNAH9 Missense_Mutation p.G2959E 0.29 probably_damaging(0.997) TCGA-BF-AAOU-01 17 15539385 15539385 T A TRIM16 Missense_Mutation p.M272L 0.28 tolerated(1) benign(0) TCGA-BF-AAOU-01 17 27829637 27829637 C T TAOK1 Missense_Mutation p.P412S 0.14 tolerated(0.23) benign(0.001) TCGA-BF-AAOU-01 17 28539876 28539876 C T SLC6A4 Silent p.L362L 0.10 TCGA-BF-AAOU-01 17 28890290 28890290 C T TBC1D29 Silent p.A100A 0.17 TCGA-BF-AAOU-01 17 29162343 29162343 T C ATAD5 Missense_Mutation p.L415P 0.28 tolerated(0.11) possibly_damaging(0.713) TCGA-BF-AAOU-01 17 38925311 38925311 C T KRT26 Missense_Mutation p.G336E 0.33 deleterious(0.01) benign(0.056) TCGA-BF-AAOU-01 17 39406340 39406340 C T KRTAP9-4 Missense_Mutation p.S123F 0.23 tolerated(0.06) possibly_damaging(0.891) TCGA-BF-AAOU-01 17 39646105 39646105 C T KRT36 Silent p.Q4Q 0.42 TCGA-BF-AAOU-01 17 39974667 39974667 C T FKBP10 Silent p.V205V 0.20 TCGA-BF-AAOU-01 17 41930294 41930294 C T CD300LG Missense_Mutation p.P132S 0.25 tolerated(0.39) benign(0.012) TCGA-BF-AAOU-01 17 42397775 42397775 G A SLC25A39 Silent p.D277D 0.06 TCGA-BF-AAOU-01 17 42458282 42458282 C T ITGA2B Missense_Mutation p.R453Q 0.22 deleterious(0) possibly_damaging(0.906) TCGA-BF-AAOU-01 17 46000364 46000364 G A SP2 Missense_Mutation p.V366I 0.31 tolerated(0.16) benign(0.011) TCGA-BF-AAOU-01 17 4883528 4883528 C T CAMTA2 Silent p.E386E 0.43 TCGA-BF-AAOU-01 17 56435819 56435819 G A RNF43 Missense_Mutation p.P440S 0.25 tolerated(0.08) possibly_damaging(0.776) TCGA-BF-AAOU-01 17 57290718 57290718 C T SMG8 Missense_Mutation p.A845V 0.25 tolerated(1) benign(0.064) TCGA-BF-AAOU-01 17 57344509 57344509 A T GDPD1 Missense_Mutation p.E228D 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-BF-AAOU-01 17 6606416 6606416 C T SLC13A5 Missense_Mutation p.E197K 0.33 tolerated(0.22) benign(0.008) TCGA-BF-AAOU-01 17 68172158 68172158 T A KCNJ2 Nonsense_Mutation p.Y326* 0.38 TCGA-BF-AAOU-01 17 7224492 7224492 G A NEURL4 Missense_Mutation p.P1100L 0.20 tolerated(0.46) benign(0) TCGA-BF-AAOU-01 17 72348985 72348985 C T KIF19 Missense_Mutation p.P669L 0.21 tolerated(0.28) benign(0.002) TCGA-BF-AAOU-01 17 80013885 80013885 C T GPS1 Silent p.S321S 0.18 TCGA-BF-AAOU-01 17 8194759 8194759 C T SLC25A35 Silent p.L162L 0.32 TCGA-BF-AAOU-01 18 13826038 13826038 G A MC5R Missense_Mutation p.E92K 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAOU-01 18 40695495 40695495 G A RIT2 5'UTR 0.30 TCGA-BF-AAOU-01 18 43204601 43204601 C T SLC14A2 5'UTR 0.19 TCGA-BF-AAOU-01 18 44561317 44561317 C T TCEB3B Missense_Mutation p.E107K 0.24 deleterious(0) possibly_damaging(0.874) TCGA-BF-AAOU-01 18 46645158 46645158 G A DYM Nonsense_Mutation p.R568* 0.20 TCGA-BF-AAOU-01 18 47421331 47421331 C T MYO5B Missense_Mutation p.E1009K 0.24 tolerated(0.24) probably_damaging(0.998) TCGA-BF-AAOU-01 18 48190459 48190459 G A MAPK4 Missense_Mutation p.R44Q 0.28 tolerated(0.74) benign(0.017) TCGA-BF-AAOU-01 18 624869 624869 C T CLUL1 Missense_Mutation p.A87V 0.10 tolerated(0.11) probably_damaging(0.926) TCGA-BF-AAOU-01 18 71797749 71797749 G A FBXO15 Silent p.I159I 0.23 TCGA-BF-AAOU-01 19 11977352 11977352 G A ZNF439 Missense_Mutation p.G59E 0.26 deleterious(0.03) benign(0.312) TCGA-BF-AAOU-01 19 15067380 15067380 G A SLC1A6 Silent p.P359P 0.19 TCGA-BF-AAOU-01 19 1556418 1556418 C T MEX3D Missense_Mutation p.G367E 0.43 deleterious(0) probably_damaging(0.941) TCGA-BF-AAOU-01 19 16268545 16268545 G A HSH2D 3'Flank 0.25 TCGA-BF-AAOU-01 19 22952108 22952108 C T ZNF99 Missense_Mutation p.D8N 0.25 deleterious(0) probably_damaging(0.99) TCGA-BF-AAOU-01 19 31038993 31038993 G A ZNF536 Missense_Mutation p.D823N 0.23 deleterious(0.02) benign(0.388) TCGA-BF-AAOU-01 19 38190130 38190130 C T ZNF607 Missense_Mutation p.R301K 0.34 tolerated(0.11) possibly_damaging(0.534) TCGA-BF-AAOU-01 19 41081387 41081387 G A SPTBN4 Missense_Mutation p.G2536D 0.52 tolerated(0.07) benign(0.043) TCGA-BF-AAOU-01 19 41125288 41125288 G T LTBP4 Missense_Mutation p.G1102V 0.20 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOU-01 19 42224868 42224868 C A CEACAM5 Missense_Mutation p.P600T 0.19 deleterious(0.05) probably_damaging(0.992) TCGA-BF-AAOU-01 19 42270186 42270186 G A CEACAM6 3'UTR 0.19 TCGA-BF-AAOU-01 19 42793444 42793444 C G CIC Missense_Mutation p.P416A 0.27 possibly_damaging(0.864) TCGA-BF-AAOU-01 19 42793447 42793447 C T CIC Missense_Mutation p.P417S 0.26 benign(0.09) TCGA-BF-AAOU-01 19 43411170 43411170 G T PSG6 Missense_Mutation p.Q382K 0.25 tolerated(0.66) benign(0.021) TCGA-BF-AAOU-01 19 43680071 43680071 C T PSG5 Silent p.R220R 0.29 TCGA-BF-AAOU-01 19 4523805 4523805 C T PLIN5 Missense_Mutation p.G376E 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOU-01 19 4538435 4538435 G A LRG1 Silent p.F187F 0.30 TCGA-BF-AAOU-01 19 4557234 4557234 C T SEMA6B Missense_Mutation p.D83N 0.27 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 19 46808579 46808579 G A HIF3A Missense_Mutation p.V99M 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-BF-AAOU-01 19 47234071 47234071 G A STRN4 Missense_Mutation p.P266L 0.26 tolerated(0.13) benign(0.073) TCGA-BF-AAOU-01 19 51207744 51207744 G A SHANK1 Nonsense_Mutation p.R369* 0.27 TCGA-BF-AAOU-01 19 5221082 5221082 G A PTPRS Silent p.V1128V 0.30 TCGA-BF-AAOU-01 19 52272346 52272346 G A FPR2 Silent p.V145V 0.27 TCGA-BF-AAOU-01 19 54403501 54403501 C T PRKCG Silent p.F432F 0.25 TCGA-BF-AAOU-01 19 54653316 54653316 C T CNOT3 Silent p.A476A 0.55 TCGA-BF-AAOU-01 19 54760148 54760148 C T LILRB5 Missense_Mutation p.G138E 0.22 tolerated(0.07) possibly_damaging(0.64) TCGA-BF-AAOU-01 19 55144573 55144573 C T LILRB1 Silent p.F355F 0.30 TCGA-BF-AAOU-01 19 55324695 55324695 G A KIR2DL4 Intron 0.55 TCGA-BF-AAOU-01 19 57328294 57328294 C T PEG3 Missense_Mutation p.E506K 0.29 tolerated(0.08) possibly_damaging(0.896) TCGA-BF-AAOU-01 19 6664872 6664872 C T TNFSF14 3'UTR 0.23 TCGA-BF-AAOU-01 19 746525 746525 C T PALM Missense_Mutation p.P292L 0.39 deleterious(0.01) benign(0.151) TCGA-BF-AAOU-01 19 7812349 7812349 C T CD209 Intron 0.24 TCGA-BF-AAOU-01 19 8190788 8190788 G A FBN3 Missense_Mutation p.R907W 0.21 deleterious(0.02) benign(0.163) TCGA-BF-AAOU-01 19 9075391 9075391 C T MUC16 Missense_Mutation p.D4019N 0.30 unknown(0) TCGA-BF-AAOU-01 19 9086873 9086873 C T MUC16 Missense_Mutation p.A1648T 0.27 unknown(0) TCGA-BF-AAOU-01 1 101704637 101704637 G A S1PR1 Missense_Mutation p.G33R 0.34 deleterious(0) probably_damaging(0.983) TCGA-BF-AAOU-01 1 110170797 110170797 C T AMPD2 Silent p.I445I 0.18 TCGA-BF-AAOU-01 1 110553848 110553848 C T AHCYL1 Missense_Mutation p.T82I 0.43 deleterious_low_confidence(0.02) benign(0.412) TCGA-BF-AAOU-01 1 116609320 116609320 C T SLC22A15 Silent p.D515D 0.25 TCGA-BF-AAOU-01 1 13669019 13669019 C T PRAMEF14 Silent p.L437L 0.35 TCGA-BF-AAOU-01 1 146672957 146672957 C T FMO5 Silent p.E320E 0.23 TCGA-BF-AAOU-01 1 147230481 147230481 G A GJA5 Missense_Mutation p.S289F 0.18 tolerated(0.61) benign(0.343) TCGA-BF-AAOU-01 1 152279155 152279155 C T FLG Missense_Mutation p.G2736E 0.15 benign(0.188) TCGA-BF-AAOU-01 1 152279984 152279984 C T FLG Missense_Mutation p.D2460N 0.27 probably_damaging(0.961) TCGA-BF-AAOU-01 1 152326351 152326351 C T FLG2 Missense_Mutation p.G1304E 0.24 benign(0) TCGA-BF-AAOU-01 1 153973416 153973416 G A NUP210L Missense_Mutation p.P1768S 0.17 tolerated(0.84) benign(0.128) TCGA-BF-AAOU-01 1 155837977 155837977 G T SYT11 Missense_Mutation p.G86W 0.22 deleterious(0.01) benign(0.379) TCGA-BF-AAOU-01 1 156911692 156911692 G A ARHGEF11 Missense_Mutation p.P1139L 0.30 deleterious(0.01) benign(0.138) TCGA-BF-AAOU-01 1 156917132 156917132 G A ARHGEF11 Missense_Mutation p.L818F 0.29 deleterious(0) possibly_damaging(0.771) TCGA-BF-AAOU-01 1 157497523 157497523 C T FCRL5 Missense_Mutation p.G615E 0.25 tolerated(0.06) probably_damaging(0.976) TCGA-BF-AAOU-01 1 158516921 158516921 A G OR6Y1 Silent p.S325S 0.31 TCGA-BF-AAOU-01 1 167787464 167787464 G A ADCY10 Missense_Mutation p.S1443F 0.40 tolerated(1) benign(0.002) TCGA-BF-AAOU-01 1 171310981 171310981 C T FMO4 3'UTR 0.16 TCGA-BF-AAOU-01 1 17597415 17597415 C T PADI3 Silent p.F291F 0.36 TCGA-BF-AAOU-01 1 177001675 177001675 C T ASTN1 Missense_Mutation p.G261E 0.26 tolerated_low_confidence(0.28) probably_damaging(1) TCGA-BF-AAOU-01 1 190129940 190129940 C T BRINP3 Missense_Mutation p.D348N 0.34 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOU-01 1 196712656 196712656 G A CFH Missense_Mutation p.G1070S 0.32 tolerated(0.05) possibly_damaging(0.476) TCGA-BF-AAOU-01 1 200969017 200969017 C T KIF21B Silent p.A587A 0.20 TCGA-BF-AAOU-01 1 201013466 201013466 C T CACNA1S Missense_Mutation p.G1596E 0.23 tolerated(0.35) benign(0.014) TCGA-BF-AAOU-01 1 204423916 204423916 A G PIK3C2B Silent p.Y649Y 0.28 TCGA-BF-AAOU-01 1 204957842 204957842 C T NFASC Missense_Mutation p.P892L 0.27 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 1 204957843 204957843 C T NFASC Silent p.P892P 0.27 TCGA-BF-AAOU-01 1 205884162 205884162 C T SLC26A9 Missense_Mutation p.G841E 0.09 unknown(0) TCGA-BF-AAOU-01 1 207143496 207143496 G A FCAMR 5'UTR 0.35 TCGA-BF-AAOU-01 1 207318040 207318040 C G C4BPA Missense_Mutation p.S591C 0.41 tolerated(0.17) benign(0.019) TCGA-BF-AAOU-01 1 207751350 207751350 C T CR1 Missense_Mutation p.P1580S 0.29 deleterious(0) benign(0.047) TCGA-BF-AAOU-01 1 211192179 211192179 C T KCNH1 Silent p.G326G 0.34 TCGA-BF-AAOU-01 1 22927483 22927483 G A EPHA8 Silent p.K877K 0.30 TCGA-BF-AAOU-01 1 233388508 233388508 C T PCNXL2 Missense_Mutation p.E621K 0.25 tolerated(0.06) benign(0.003) TCGA-BF-AAOU-01 1 245862260 245862260 G A KIF26B Silent p.A2033A 0.25 TCGA-BF-AAOU-01 1 247769532 247769532 C T OR2G3 Silent p.S215S 0.24 TCGA-BF-AAOU-01 1 248039283 248039283 C T TRIM58 Missense_Mutation p.P318L 0.27 tolerated(0.91) benign(0.001) TCGA-BF-AAOU-01 1 248059616 248059616 C T OR2W3 Missense_Mutation p.S243F 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOU-01 1 248112615 248112615 G A OR2L8 Silent p.S152S 0.12 TCGA-BF-AAOU-01 1 248224439 248224439 G A OR2L3 Silent p.S152S 0.19 TCGA-BF-AAOU-01 1 249106298 249106298 G A SH3BP5L Missense_Mutation p.P328L 0.29 tolerated(0.05) benign(0.026) TCGA-BF-AAOU-01 1 24981401 24981401 C T SRRM1 Missense_Mutation p.R366C 0.37 unknown(0) TCGA-BF-AAOU-01 1 27631507 27631507 C T WDTC1 Silent p.I552I 0.44 TCGA-BF-AAOU-01 1 35654793 35654793 G A SFPQ Missense_Mutation p.R536C 0.38 tolerated(0.06) possibly_damaging(0.523) TCGA-BF-AAOU-01 1 42880478 42880478 G A RIMKLA Missense_Mutation p.E337K 0.44 tolerated_low_confidence(0.06) benign(0.056) TCGA-BF-AAOU-01 1 52703276 52703276 A G ZFYVE9 Missense_Mutation p.N63D 0.33 deleterious_low_confidence(0.05) benign(0.002) TCGA-BF-AAOU-01 1 6635207 6635207 G A TAS1R1 Missense_Mutation p.E339K 0.28 tolerated(0.39) benign(0.029) TCGA-BF-AAOU-01 1 68904705 68904705 A C RPE65 Silent p.T306T 0.33 TCGA-BF-AAOU-01 1 75065484 75065484 C T C1orf173 Missense_Mutation p.E541K 0.41 deleterious(0.04) benign(0.43) TCGA-BF-AAOU-01 1 82408871 82408871 C T LPHN2 Nonsense_Mutation p.R206* 0.41 TCGA-BF-AAOU-01 20 16253802 16253802 G A KIF16B 3'UTR 0.33 TCGA-BF-AAOU-01 20 23017213 23017213 C T SSTR4 Missense_Mutation p.P365S 0.22 tolerated(0.07) benign(0.03) TCGA-BF-AAOU-01 20 2321128 2321128 C T TGM3 Silent p.I661I 0.30 TCGA-BF-AAOU-01 20 2375134 2375134 G A TGM6 Missense_Mutation p.R15K 0.18 tolerated(0.91) benign(0.002) TCGA-BF-AAOU-01 20 2413242 2413242 C T TGM6 Missense_Mutation p.P692S 0.24 tolerated(0.45) benign(0.016) TCGA-BF-AAOU-01 20 2775970 2775970 G T CPXM1 Missense_Mutation p.Q605K 0.15 tolerated(0.4) benign(0.063) TCGA-BF-AAOU-01 20 32336759 32336759 C T ZNF341 Missense_Mutation p.P124S 0.22 tolerated(0.07) benign(0.189) TCGA-BF-AAOU-01 20 33875254 33875254 G A FAM83C Missense_Mutation p.S443L 0.18 deleterious_low_confidence(0) benign(0.33) TCGA-BF-AAOU-01 20 51872628 51872628 G A TSHZ2 Silent p.L877L 0.23 TCGA-BF-AAOU-01 20 57767946 57767946 G A ZNF831 Silent p.G624G 0.20 TCGA-BF-AAOU-01 20 58645756 58645756 C T C20orf197 Silent p.V58V 0.21 TCGA-BF-AAOU-01 20 9496111 9496111 C G LAMP5 Missense_Mutation p.Q26E 0.26 tolerated(0.91) benign(0.005) TCGA-BF-AAOU-01 21 11039247 11039247 C T BAGE2 RNA 0.04 TCGA-BF-AAOU-01 21 36171672 36171672 G T RUNX1 Missense_Mutation p.P298Q 0.28 deleterious(0.05) probably_damaging(0.917) TCGA-BF-AAOU-01 21 41416186 41416186 C T DSCAM Silent p.R1734R 0.35 TCGA-BF-AAOU-01 21 47545473 47545473 C T COL6A2 Silent p.F637F 0.19 TCGA-BF-AAOU-01 22 19319008 19319008 G A HIRA Silent p.L1003L 0.06 TCGA-BF-AAOU-01 22 37962653 37962653 G A CDC42EP1 Missense_Mutation p.M99I 0.24 tolerated(0.43) benign(0.032) TCGA-BF-AAOU-01 22 38122078 38122078 C T TRIOBP Missense_Mutation p.P1172L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAOU-01 22 40415270 40415270 G A FAM83F Silent p.L196L 0.28 TCGA-BF-AAOU-01 22 43272321 43272321 C T PACSIN2 Silent p.K390K 0.30 TCGA-BF-AAOU-01 22 50217105 50217105 G A BRD1 Silent p.D287D 0.23 TCGA-BF-AAOU-01 22 51019050 51019050 G A CHKB Silent p.L207L 0.22 TCGA-BF-AAOU-01 2 101089977 101089977 G A NMS Nonsense_Mutation p.W53* 0.32 TCGA-BF-AAOU-01 2 102808463 102808463 T C IL1RL2 Silent p.G124G 0.28 TCGA-BF-AAOU-01 2 102842449 102842449 C T IL1RL2 Silent p.I361I 0.07 TCGA-BF-AAOU-01 2 11727591 11727591 C T GREB1 Intron 0.29 TCGA-BF-AAOU-01 2 128467136 128467136 G A WDR33 Missense_Mutation p.P1165S 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-BF-AAOU-01 2 131486865 131486865 C T GPR148 Silent p.S47S 0.46 TCGA-BF-AAOU-01 2 143986230 143986230 C T ARHGAP15 Missense_Mutation p.S126F 0.27 deleterious(0) possibly_damaging(0.567) TCGA-BF-AAOU-01 2 145156014 145156014 G A ZEB2 Nonsense_Mutation p.Q914* 0.31 TCGA-BF-AAOU-01 2 148731080 148731080 A G ORC4 Missense_Mutation p.L24S 0.17 deleterious(0) probably_damaging(0.937) TCGA-BF-AAOU-01 2 155158086 155158086 C T GALNT13 Silent p.F380F 0.22 TCGA-BF-AAOU-01 2 15557812 15557812 G A NBAS Nonsense_Mutation p.R868* 0.25 TCGA-BF-AAOU-01 2 163055304 163055304 G A FAP Silent p.F455F 0.24 TCGA-BF-AAOU-01 2 163055306 163055306 A T FAP Missense_Mutation p.F455I 0.26 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOU-01 2 166221712 166221712 G A SCN2A Silent p.E1153E 0.24 TCGA-BF-AAOU-01 2 166245320 166245320 C T SCN2A Silent p.F1668F 0.29 TCGA-BF-AAOU-01 2 168103789 168103789 G A XIRP2 Missense_Mutation p.D1963N 0.26 benign(0.076) TCGA-BF-AAOU-01 2 169842719 169842719 G A ABCB11 Silent p.F328F 0.44 TCGA-BF-AAOU-01 2 170092365 170092365 C T LRP2 Silent p.V1635V 0.20 TCGA-BF-AAOU-01 2 175436523 175436523 C T WIPF1 Missense_Mutation p.R337Q 0.36 deleterious(0) probably_damaging(0.921) TCGA-BF-AAOU-01 2 179494117 179494117 C T TTN Missense_Mutation p.E14779K 0.38 TCGA-BF-AAOU-01 2 179642422 179642422 C T TTN Intron 0.17 TCGA-BF-AAOU-01 2 179702035 179702035 C T CCDC141 Missense_Mutation p.G1304E 0.34 tolerated(0.15) benign(0.073) TCGA-BF-AAOU-01 2 182413456 182413456 G A CERKL Missense_Mutation p.P368S 0.21 tolerated(0.42) benign(0.145) TCGA-BF-AAOU-01 2 189927950 189927950 C T COL5A2 Missense_Mutation p.G606E 0.32 probably_damaging(1) TCGA-BF-AAOU-01 2 1914052 1914052 C T MYT1L Missense_Mutation p.D591N 0.16 tolerated(0.05) benign(0.358) TCGA-BF-AAOU-01 2 204030975 204030975 A G NBEAL1 Missense_Mutation p.T1911A 0.13 deleterious(0.04) benign(0.41) TCGA-BF-AAOU-01 2 215819943 215819943 C T ABCA12 Missense_Mutation p.E2126K 0.46 tolerated(0.39) possibly_damaging(0.639) TCGA-BF-AAOU-01 2 215910588 215910588 A T ABCA12 Missense_Mutation p.L282Q 0.47 deleterious(0.01) benign(0.265) TCGA-BF-AAOU-01 2 218999528 218999528 G A CXCR2 Missense_Mutation p.E2K 0.31 tolerated_low_confidence(0.25) benign(0.018) TCGA-BF-AAOU-01 2 219028931 219028931 C T CXCR1 Missense_Mutation p.R335H 0.39 tolerated(0.16) benign(0.066) TCGA-BF-AAOU-01 2 226447152 226447152 C T NYAP2 Missense_Mutation p.P340L 0.42 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOU-01 2 227896879 227896879 G A COL4A4 Missense_Mutation p.P1231S 0.28 unknown(0) TCGA-BF-AAOU-01 2 227968727 227968727 C T COL4A4 Silent p.L259L 0.39 TCGA-BF-AAOU-01 2 237076120 237076120 G A GBX2 Silent p.S165S 0.29 TCGA-BF-AAOU-01 2 24056929 24056929 G A ATAD2B Missense_Mutation p.L530F 0.16 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 2 29296380 29296380 C T C2orf71 Missense_Mutation p.D250N 0.35 tolerated(0.32) benign(0.083) TCGA-BF-AAOU-01 2 31595230 31595230 C A XDH Missense_Mutation p.V574L 0.28 tolerated(0.08) benign(0.228) TCGA-BF-AAOU-01 2 31595231 31595231 C T XDH Missense_Mutation p.M573I 0.28 tolerated(0.06) benign(0.017) TCGA-BF-AAOU-01 2 74307693 74307693 C T TET3 Missense_Mutation p.S750F 0.26 deleterious(0.02) benign(0.321) TCGA-BF-AAOU-01 2 79253839 79253839 G A REG3G Missense_Mutation p.G26D 0.37 deleterious(0) probably_damaging(0.947) TCGA-BF-AAOU-01 2 85604529 85604529 C T ELMOD3 Silent p.L224L 0.32 TCGA-BF-AAOU-01 2 89399514 89399514 C T IGKV1-16 Silent p.G63G 0.30 TCGA-BF-AAOU-01 2 95940367 95940367 C T PROM2 Silent p.L12L 0.19 TCGA-BF-AAOU-01 2 95940490 95940490 C T PROM2 Nonsense_Mutation p.R53* 0.32 TCGA-BF-AAOU-01 2 98409382 98409382 G A TMEM131 Missense_Mutation p.S1204F 0.36 tolerated_low_confidence(0.07) benign(0.31) TCGA-BF-AAOU-01 2 99294906 99294906 G A MGAT4A Silent p.F41F 0.23 TCGA-BF-AAOU-01 3 105238957 105238957 C T ALCAM Silent p.I40I 0.54 TCGA-BF-AAOU-01 3 105438925 105438925 G A CBLB Missense_Mutation p.S458F 0.08 tolerated(0.18) benign(0.359) TCGA-BF-AAOU-01 3 125741686 125741686 C T SLC41A3 Missense_Mutation p.D230N 0.60 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOU-01 3 128204582 128204582 G A GATA2 Missense_Mutation p.R287C 0.38 deleterious(0) probably_damaging(0.988) TCGA-BF-AAOU-01 3 170857266 170857266 A G TNIK Missense_Mutation p.L471P 0.61 tolerated(0.09) unknown(0) TCGA-BF-AAOU-01 3 19432039 19432039 C T KCNH8 Missense_Mutation p.S293L 0.59 tolerated(0.11) benign(0.315) TCGA-BF-AAOU-01 3 196675432 196675432 C T PIGZ Silent p.E112E 0.77 TCGA-BF-AAOU-01 3 23929111 23929111 C T UBE2E1 Missense_Mutation p.P86L 0.61 deleterious(0.01) probably_damaging(0.935) TCGA-BF-AAOU-01 3 2778004 2778004 G A CNTN4 Missense_Mutation p.G54E 0.55 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 3 2928833 2928833 G A CNTN4 Missense_Mutation p.D289N 0.60 deleterious(0.01) probably_damaging(0.913) TCGA-BF-AAOU-01 3 36780141 36780141 C T DCLK3 Missense_Mutation p.E4K 0.56 deleterious(0) possibly_damaging(0.799) TCGA-BF-AAOU-01 3 40457387 40457387 G A ENTPD3 Silent p.L218L 0.45 TCGA-BF-AAOU-01 3 4452575 4452575 G A SUMF1 Missense_Mutation p.H310Y 0.60 tolerated(0.07) possibly_damaging(0.752) TCGA-BF-AAOU-01 3 48520645 48520645 C T SHISA5 Silent p.P85P 0.77 TCGA-BF-AAOU-01 3 48719027 48719027 G A NCKIPSD Missense_Mutation p.P262L 0.51 deleterious(0.01) benign(0.061) TCGA-BF-AAOU-01 3 49321500 49321500 G A USP4 Silent p.I820I 0.43 TCGA-BF-AAOU-01 3 50414961 50414961 G A CACNA2D2 Silent p.I521I 0.55 TCGA-BF-AAOU-01 3 62478024 62478024 G A CADPS Missense_Mutation p.P942L 0.54 deleterious(0.02) possibly_damaging(0.713) TCGA-BF-AAOU-01 3 64580074 64580074 G A ADAMTS9 Silent p.L1406L 0.63 TCGA-BF-AAOU-01 3 93780401 93780401 G A DHFRL1 5'UTR 0.53 TCGA-BF-AAOU-01 3 97806935 97806940 ATAAGG TAAGA OR5AC2 Nonsense_Mutation p.I307* 0.08 TCGA-BF-AAOU-01 3 97888035 97888035 C T OR5H15 Silent p.F164F 0.55 TCGA-BF-AAOU-01 4 100128700 100128700 G A ADH6 Silent p.V289V 0.31 TCGA-BF-AAOU-01 4 120240779 120240779 C T FABP2 Missense_Mutation p.G87E 0.34 deleterious(0) possibly_damaging(0.712) TCGA-BF-AAOU-01 4 151774077 151774077 T C LRBA Missense_Mutation p.K929E 0.38 deleterious(0.05) probably_damaging(0.991) TCGA-BF-AAOU-01 4 164394536 164394536 C T TKTL2 Silent p.P117P 0.29 TCGA-BF-AAOU-01 4 22749095 22749095 G A GBA3 Missense_Mutation p.D155N 0.43 tolerated(0.11) benign(0.048) TCGA-BF-AAOU-01 4 23815732 23815732 G A PPARGC1A Silent p.I458I 0.30 TCGA-BF-AAOU-01 4 47645072 47645072 G A CORIN Intron 0.25 TCGA-BF-AAOU-01 4 57777030 57777030 C T REST Silent p.L76L 0.36 TCGA-BF-AAOU-01 5 123983809 123983809 G A ZNF608 Silent p.T756T 0.16 TCGA-BF-AAOU-01 5 134126177 134126177 C T DDX46 Nonsense_Mutation p.R521* 0.14 TCGA-BF-AAOU-01 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.59 TCGA-BF-AAOU-01 5 140723728 140723728 C T PCDHGA3 Missense_Mutation p.S43F 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.513) TCGA-BF-AAOU-01 5 149563088 149563088 A T CDX1 Nonsense_Mutation p.K215* 0.60 TCGA-BF-AAOU-01 5 150563997 150563997 C T CCDC69 Silent p.E207E 0.26 TCGA-BF-AAOU-01 5 160758090 160758090 G A GABRB2 Missense_Mutation p.R293W 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 5 167525101 167525101 C T TENM2 Silent p.F594F 0.34 TCGA-BF-AAOU-01 5 172386889 172386889 C T RPL26L1 Missense_Mutation p.P5S 0.43 tolerated(0.13) benign(0.001) TCGA-BF-AAOU-01 5 178634562 178634562 G A ADAMTS2 Silent p.F281F 0.19 TCGA-BF-AAOU-01 5 55094381 55094381 G A DDX4 Missense_Mutation p.E533K 0.18 deleterious(0) probably_damaging(0.994) TCGA-BF-AAOU-01 5 55110750 55110750 G A DDX4 Silent p.R579R 0.20 TCGA-BF-AAOU-01 5 72469157 72469157 G A TMEM174 Silent p.Q29Q 0.18 TCGA-BF-AAOU-01 5 79351802 79351802 C T THBS4 Missense_Mutation p.P163S 0.31 tolerated(0.99) benign(0) TCGA-BF-AAOU-01 5 83239307 83239307 G A EDIL3 Silent p.I458I 0.48 TCGA-BF-AAOU-01 6 128135008 128135008 C T THEMIS Missense_Mutation p.D260N 0.17 tolerated(0.14) benign(0.327) TCGA-BF-AAOU-01 6 128388713 128388713 G A PTPRK Missense_Mutation p.P703L 0.23 tolerated(0.06) benign(0.003) TCGA-BF-AAOU-01 6 136687003 136687003 C T MAP7 Silent p.E403E 0.28 TCGA-BF-AAOU-01 6 142399907 142399907 G A NMBR Missense_Mutation p.R186C 0.17 tolerated(0.17) possibly_damaging(0.636) TCGA-BF-AAOU-01 6 152771842 152771842 G A SYNE1 Missense_Mutation p.L1105F 0.28 probably_damaging(0.917) TCGA-BF-AAOU-01 6 154360872 154360872 C T OPRM1 Missense_Mutation p.P158S 0.16 tolerated(0.26) benign(0.018) TCGA-BF-AAOU-01 6 159653120 159653120 C T FNDC1 Missense_Mutation p.R526C 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-BF-AAOU-01 6 160557635 160557635 C T SLC22A1 Silent p.F338F 0.23 TCGA-BF-AAOU-01 6 161085251 161085251 G A LPA 5'UTR 0.21 TCGA-BF-AAOU-01 6 168439312 168439312 C T KIF25 Missense_Mutation p.L133F 0.33 deleterious(0) probably_damaging(1) TCGA-BF-AAOU-01 6 25726782 25726782 G A HIST1H2AA 5'UTR 0.26 TCGA-BF-AAOU-01 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.18 deleterious(0.02) benign(0.022) TCGA-BF-AAOU-01 6 30954561 30954561 C T MUC21 Silent p.T203T 0.25 TCGA-BF-AAOU-01 6 31113512 31113512 G A CCHCR1 Nonsense_Mutation p.R552* 0.31 TCGA-BF-AAOU-01 6 31856041 31856041 C T EHMT2 Missense_Mutation p.E508K 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-BF-AAOU-01 6 31856042 31856042 C T EHMT2 Silent p.L507L 0.40 TCGA-BF-AAOU-01 6 32713031 32713031 G A HLA-DQA2 Missense_Mutation p.V60M 0.21 deleterious(0.01) probably_damaging(0.926) TCGA-BF-AAOU-01 6 40400182 40400182 G A LRFN2 Missense_Mutation p.S224L 0.29 tolerated(0.67) benign(0.002) TCGA-BF-AAOU-01 6 42689569 42689569 G T PRPH2 Missense_Mutation p.N168K 0.24 deleterious(0) possibly_damaging(0.462) TCGA-BF-AAOU-01 6 43250711 43250711 G A TTBK1 Missense_Mutation p.E745K 0.15 probably_damaging(0.952) TCGA-BF-AAOU-01 6 46659619 46659619 C T TDRD6 Missense_Mutation p.P1252S 0.26 tolerated(0.78) benign(0.006) TCGA-BF-AAOU-01 6 46659620 46659620 C T TDRD6 Missense_Mutation p.P1252L 0.25 tolerated(0.74) benign(0.003) TCGA-BF-AAOU-01 6 62887212 62887212 C T KHDRBS2 Missense_Mutation p.E33K 0.30 tolerated(0.06) benign(0.142) TCGA-BF-AAOU-01 6 71571312 71571312 C T SMAP1 3'UTR 0.18 TCGA-BF-AAOU-01 6 71571465 71571465 G A SMAP1 3'UTR 0.27 TCGA-BF-AAOU-01 6 7904845 7904845 G A TXNDC5 Silent p.S125S 0.31 TCGA-BF-AAOU-01 7 100350572 100350572 C T ZAN Silent p.P948P 0.22 TCGA-BF-AAOU-01 7 11632983 11632983 C T THSD7A Missense_Mutation p.R390Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOU-01 7 128486089 128486089 C T FLNC Missense_Mutation p.S1279F 0.42 deleterious(0.01) possibly_damaging(0.673) TCGA-BF-AAOU-01 7 128496963 128496963 G A FLNC Missense_Mutation p.G2517R 0.44 tolerated(0.43) benign(0.232) TCGA-BF-AAOU-01 7 131859545 131859545 C T PLXNA4 Missense_Mutation p.D1337N 0.19 deleterious(0.04) possibly_damaging(0.893) TCGA-BF-AAOU-01 7 141952369 141952369 C T PRSS58 Missense_Mutation p.D167N 0.44 tolerated(1) benign(0.003) TCGA-BF-AAOU-01 7 142832296 142832296 C T PIP Silent p.I35I 0.59 TCGA-BF-AAOU-01 7 143079521 143079521 C T ZYX Missense_Mutation p.P130L 0.16 tolerated(0.1) unknown(0) TCGA-BF-AAOU-01 7 143079522 143079522 C T ZYX Silent p.P130P 0.16 TCGA-BF-AAOU-01 7 143807158 143807158 C T OR2A2 Silent p.L161L 0.24 TCGA-BF-AAOU-01 7 146829589 146829589 G A CNTNAP2 Missense_Mutation p.D446N 0.39 tolerated(0.22) possibly_damaging(0.908) TCGA-BF-AAOU-01 7 154667645 154667645 C T DPP6 Missense_Mutation p.A638V 0.35 deleterious(0.03) benign(0.001) TCGA-BF-AAOU-01 7 155094476 155094476 C T INSIG1 Missense_Mutation p.L242F 0.16 tolerated(0.13) probably_damaging(0.979) TCGA-BF-AAOU-01 7 18801793 18801793 G A HDAC9 Missense_Mutation p.R686Q 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-BF-AAOU-01 7 22270512 22270512 C T RAPGEF5 Missense_Mutation p.D122N 0.27 deleterious(0.05) benign(0) TCGA-BF-AAOU-01 7 30793548 30793548 G A INMT Missense_Mutation p.G119E 0.30 deleterious(0) probably_damaging(0.98) TCGA-BF-AAOU-01 7 48338074 48338074 C T ABCA13 Missense_Mutation p.S3104F 0.26 probably_damaging(0.999) TCGA-BF-AAOU-01 7 50367243 50367243 G A IKZF1 Missense_Mutation p.S17N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-BF-AAOU-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.18 TCGA-BF-AAOU-01 7 64613403 64613403 C T INTS4L1 RNA 0.31 TCGA-BF-AAOU-01 7 7571062 7571062 G A COL28A1 Missense_Mutation p.R200C 0.39 deleterious(0) probably_damaging(0.93) TCGA-BF-AAOU-01 7 77469520 77469520 T C PHTF2 5'UTR 0.13 TCGA-BF-AAOU-01 7 82474628 82474628 C T PCLO Missense_Mutation p.G4669R 0.28 unknown(0) TCGA-BF-AAOU-01 7 83047782 83047782 C T SEMA3E Silent p.L158L 0.29 TCGA-BF-AAOU-01 7 913044 913044 G A SUN1 3'UTR 0.46 TCGA-BF-AAOU-01 7 92848860 92848860 T A HEPACAM2 Intron 0.60 TCGA-BF-AAOU-01 7 93551458 93551458 C T GNG11 Silent p.A3A 0.38 TCGA-BF-AAOU-01 7 99313394 99313394 G A CYP3A7 Silent p.F219F 0.46 TCGA-BF-AAOU-01 8 101083624 101083624 C T RGS22 Missense_Mutation p.M189I 0.24 tolerated(0.05) benign(0.113) TCGA-BF-AAOU-01 8 106814227 106814227 G A ZFPM2 Silent p.G639G 0.29 TCGA-BF-AAOU-01 8 108348406 108348406 C T ANGPT1 Missense_Mutation p.E183K 0.17 tolerated(0.08) probably_damaging(0.997) TCGA-BF-AAOU-01 8 110131462 110131462 G A TRHR Silent p.Q325Q 0.26 TCGA-BF-AAOU-01 8 113697892 113697892 C T CSMD3 Missense_Mutation p.G742E 0.26 deleterious(0.04) probably_damaging(1) TCGA-BF-AAOU-01 8 123964520 123964520 A G ZHX2 Missense_Mutation p.K257R 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAOU-01 8 144695403 144695403 G A TSTA3 Silent p.T291T 0.26 TCGA-BF-AAOU-01 8 145151349 145151349 C G CYC1 Missense_Mutation p.A188G 0.33 tolerated(0.1) possibly_damaging(0.768) TCGA-BF-AAOU-01 8 145948096 145948096 C T ZNF251 Missense_Mutation p.G317R 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-BF-AAOU-01 8 21964898 21964898 G A NUDT18 Silent p.F295F 0.26 TCGA-BF-AAOU-01 8 23167354 23167354 G A LOXL2 Silent p.F569F 0.19 TCGA-BF-AAOU-01 8 24241985 24241985 G C ADAMDEC1 5'UTR 0.17 TCGA-BF-AAOU-01 8 26513177 26513177 C T DPYSL2 Silent p.I558I 0.32 TCGA-BF-AAOU-01 8 39467040 39467040 C T ADAM18 Missense_Mutation p.P102S 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-BF-AAOU-01 8 41519035 41519035 C T ANK1 Intron 0.30 TCGA-BF-AAOU-01 8 53028895 53028895 C T ST18 Silent p.E981E 0.33 TCGA-BF-AAOU-01 8 65509424 65509424 C T CYP7B1 Silent p.G432G 0.30 TCGA-BF-AAOU-01 8 69136817 69136817 G A PREX2 Silent p.A1577A 0.27 TCGA-BF-AAOU-01 8 72964851 72964851 C T TRPA1 Silent p.T598T 0.36 TCGA-BF-AAOU-01 8 77616675 77616675 G A ZFHX4 Missense_Mutation p.E118K 0.34 possibly_damaging(0.502) TCGA-BF-AAOU-01 8 86193609 86193609 G A CA13 3'UTR 0.20 TCGA-BF-AAOU-01 8 86354381 86354381 C T CA3 Silent p.G104G 0.23 TCGA-BF-AAOU-01 8 87560632 87560632 C T CPNE3 Missense_Mutation p.S328F 0.26 deleterious(0.01) benign(0.114) TCGA-BF-AAOU-01 9 104433302 104433302 G A GRIN3A Silent p.F464F 0.39 TCGA-BF-AAOU-01 9 113562875 113562875 G A MUSK Silent p.V739V 0.24 TCGA-BF-AAOU-01 9 115593152 115593152 C T SNX30 Missense_Mutation p.L203F 0.23 deleterious(0) probably_damaging(0.995) TCGA-BF-AAOU-01 9 122004325 122004325 C T BRINP1 Silent p.K193K 0.23 TCGA-BF-AAOU-01 9 128111792 128111792 C T GAPVD1 Missense_Mutation p.S1125F 0.27 deleterious(0) probably_damaging(0.915) TCGA-BF-AAOU-01 9 131186462 131186462 C T CERCAM Missense_Mutation p.L158F 0.27 tolerated(0.2) benign(0.116) TCGA-BF-AAOU-01 9 32632592 32632592 C T TAF1L Missense_Mutation p.D996N 0.38 tolerated(0.11) possibly_damaging(0.673) TCGA-BF-AAOU-01 9 35610733 35610733 G C CD72 Nonsense_Mutation p.S323* 0.21 TCGA-BF-AAOU-01 9 4576054 4576054 G A SLC1A1 Missense_Mutation p.R310Q 0.53 deleterious(0.01) probably_damaging(0.948) TCGA-BF-AAOU-01 9 90500474 90500474 C T SPATA31E1 Missense_Mutation p.H358Y 0.44 deleterious(0.02) possibly_damaging(0.759) TCGA-BF-AAOU-01 9 96305655 96305655 G A FAM120A Silent p.R687R 0.23 TCGA-BF-AAOU-01 X 105179175 105179175 C T NRK Silent p.F1172F 0.32 TCGA-BF-AAOU-01 X 110406167 110406167 C T PAK3 Missense_Mutation p.P201S 0.25 tolerated(0.2) possibly_damaging(0.69) TCGA-BF-AAOU-01 X 123787514 123787514 G A TENM1 Silent p.L430L 0.23 TCGA-BF-AAOU-01 X 12734858 12734858 C T FRMPD4 Silent p.L760L 0.05 TCGA-BF-AAOU-01 X 128582290 128582290 G A SMARCA1 Missense_Mutation p.S1054F 0.23 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-BF-AAOU-01 X 150828283 150828283 C T PASD1 Silent p.F272F 0.31 TCGA-BF-AAOU-01 X 150912076 150912076 C T CNGA2 Silent p.I367I 0.32 TCGA-BF-AAOU-01 X 151130954 151130954 G A GABRE Silent p.I168I 0.26 TCGA-BF-AAOU-01 X 152830398 152830398 C T ATP2B3 Missense_Mutation p.T1060I 0.33 deleterious(0.01) benign(0.424) TCGA-BF-AAOU-01 X 153037340 153037340 C A PLXNB3 Missense_Mutation p.P870T 0.29 tolerated(0.15) benign(0.012) TCGA-BF-AAOU-01 X 153043834 153043834 G A SRPK3 5'Flank 0.26 TCGA-BF-AAOU-01 X 18259384 18259384 C T SCML2 Missense_Mutation p.G697E 0.32 deleterious(0) benign(0.366) TCGA-BF-AAOU-01 X 18800483 18800483 G - PPEF1 Splice_Site p.X242_splice 0.14 TCGA-BF-AAOU-01 X 18966928 18966928 G A PHKA2 Silent p.F157F 0.25 TCGA-BF-AAOU-01 X 19410479 19410479 G A MAP3K15 Silent p.I769I 0.33 TCGA-BF-AAOU-01 X 19564114 19564114 C T SH3KBP1 Missense_Mutation p.E517K 0.15 tolerated(0.06) benign(0.001) TCGA-BF-AAOU-01 X 27998426 27998426 C T DCAF8L1 Missense_Mutation p.M342I 0.16 tolerated(0.16) benign(0.001) TCGA-BF-AAOU-01 X 3030586 3030586 G A ARSF Missense_Mutation p.E588K 0.28 tolerated_low_confidence(0.33) benign(0.006) TCGA-BF-AAOU-01 X 31496446 31496446 C T DMD Missense_Mutation p.R2905Q 0.26 benign(0.417) TCGA-BF-AAOU-01 X 33229461 33229461 A T DMD 5'UTR 0.36 TCGA-BF-AAOU-01 X 37663189 37663189 G A CYBB Missense_Mutation p.M319I 0.21 deleterious(0) possibly_damaging(0.69) TCGA-BF-AAOU-01 X 39931932 39931932 T G BCOR Missense_Mutation p.K889N 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAOU-01 X 49075802 49075802 C T CACNA1F Missense_Mutation p.R895Q 0.33 tolerated(0.22) benign(0.187) TCGA-BF-AAOU-01 X 49855396 49855396 C T CLCN5 Missense_Mutation p.P738L 0.14 tolerated(0.42) benign(0.018) TCGA-BF-AAOX-01 10 102046436 102046436 C T BLOC1S2 5'UTR 0.33 TCGA-BF-AAOX-01 10 102250630 102250630 G A SEC31B Missense_Mutation p.P828L 0.29 tolerated(0.2) benign(0.004) TCGA-BF-AAOX-01 10 103427657 103427657 G A FBXW4 Silent p.I252I 0.34 TCGA-BF-AAOX-01 10 103906879 103906879 C T PPRC1 Missense_Mutation p.S1377F 0.47 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 10 103909049 103909049 C T PPRC1 Silent p.G1618G 0.37 TCGA-BF-AAOX-01 10 103909050 103909050 C T PPRC1 Nonsense_Mutation p.R1619* 0.36 TCGA-BF-AAOX-01 10 104816662 104816662 C T CNNM2 Missense_Mutation p.P672S 0.25 tolerated(0.12) benign(0.045) TCGA-BF-AAOX-01 10 106074847 106074847 G A ITPRIP Silent p.F321F 0.32 TCGA-BF-AAOX-01 10 108716277 108716277 A T SORCS1 Missense_Mutation p.L207H 0.42 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOX-01 10 108716278 108716278 G A SORCS1 Missense_Mutation p.L207F 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-BF-AAOX-01 10 114925427 114925427 C T TCF7L2 Missense_Mutation p.S502F 0.34 deleterious(0) probably_damaging(0.945) TCGA-BF-AAOX-01 10 115350588 115350588 C T NRAP Missense_Mutation p.D1569N 0.45 tolerated(0.58) benign(0) TCGA-BF-AAOX-01 10 115392861 115392861 A G NRAP Silent p.N538N 0.27 TCGA-BF-AAOX-01 10 116048833 116048833 G C VWA2 Missense_Mutation p.Q569H 0.31 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 10 120354710 120354710 G A PRLHR Missense_Mutation p.S16F 0.27 deleterious(0.03) benign(0.172) TCGA-BF-AAOX-01 10 120460921 120460921 C T CACUL1 Splice_Site p.X232_splice 0.36 TCGA-BF-AAOX-01 10 122665418 122665418 G A WDR11 Missense_Mutation p.V1108I 0.38 deleterious(0.01) benign(0.266) TCGA-BF-AAOX-01 10 123239607 123239607 C T FGFR2 Intron 0.34 TCGA-BF-AAOX-01 10 123274817 123274817 C T FGFR2 Silent p.K368K 0.33 TCGA-BF-AAOX-01 10 124339099 124339099 G A DMBT1 Missense_Mutation p.E229K 0.32 tolerated(0.39) possibly_damaging(0.9) TCGA-BF-AAOX-01 10 124340394 124340394 G C DMBT1 Missense_Mutation p.R339P 0.26 tolerated(0.29) possibly_damaging(0.578) TCGA-BF-AAOX-01 10 124459191 124459191 G A C10orf120 Missense_Mutation p.S39F 0.34 tolerated(0.11) probably_damaging(0.938) TCGA-BF-AAOX-01 10 125557632 125557632 C T CPXM2 Missense_Mutation p.G250E 0.25 deleterious(0) probably_damaging(0.942) TCGA-BF-AAOX-01 10 125805519 125805519 C T CHST15 Silent p.G70G 0.32 TCGA-BF-AAOX-01 10 12802981 12802981 G A CAMK1D Missense_Mutation p.E112K 0.27 deleterious(0.01) possibly_damaging(0.784) TCGA-BF-AAOX-01 10 129906098 129906098 G A MKI67 Missense_Mutation p.P1336S 0.34 tolerated(0.12) possibly_damaging(0.752) TCGA-BF-AAOX-01 10 131565084 131565084 C T MGMT Silent p.V180V 0.25 TCGA-BF-AAOX-01 10 13337562 13337562 A G PHYH Missense_Mutation p.F60S 0.26 deleterious(0.03) possibly_damaging(0.468) TCGA-BF-AAOX-01 10 134910498 134910498 C T GPR123 Silent p.S8S 0.35 TCGA-BF-AAOX-01 10 135094824 135094824 G A TUBGCP2 Silent p.I870I 0.33 TCGA-BF-AAOX-01 10 135126077 135126077 C T ZNF511 Intron 0.33 TCGA-BF-AAOX-01 10 135340868 135340869 TC CTT CYP2E1 5'UTR 0.26 TCGA-BF-AAOX-01 10 13672259 13672259 G A PRPF18 Splice_Site p.X317_splice 0.29 TCGA-BF-AAOX-01 10 13672260 13672260 G A PRPF18 Missense_Mutation p.G317R 0.29 deleterious(0) probably_damaging(0.943) TCGA-BF-AAOX-01 10 17113553 17113553 G A CUBN Missense_Mutation p.P833S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-BF-AAOX-01 10 23244776 23244776 G A ARMC3 Silent p.V69V 0.29 TCGA-BF-AAOX-01 10 24822108 24822108 C T KIAA1217 Missense_Mutation p.S1119F 0.26 deleterious(0.01) benign(0.03) TCGA-BF-AAOX-01 10 26518662 26518662 G A GAD2 Missense_Mutation p.G266R 0.26 deleterious(0) benign(0.169) TCGA-BF-AAOX-01 10 26589858 26589858 G A GAD2 Missense_Mutation p.E576K 0.29 deleterious(0.03) benign(0.032) TCGA-BF-AAOX-01 10 28030330 28030330 G A MKX Missense_Mutation p.P98S 0.28 deleterious(0.02) benign(0.179) TCGA-BF-AAOX-01 10 28274091 28274091 C T ARMC4 Missense_Mutation p.M144I 0.40 tolerated(0.51) benign(0) TCGA-BF-AAOX-01 10 31812941 31812941 G A ZEB1 Silent p.K895K 0.33 TCGA-BF-AAOX-01 10 33475231 33475231 G T NRP1 Missense_Mutation p.Q750K 0.31 tolerated(1) possibly_damaging(0.643) TCGA-BF-AAOX-01 10 37442511 37442511 G A ANKRD30A Silent p.E517E 0.09 TCGA-BF-AAOX-01 10 3824308 3824308 G A KLF6 Silent p.I67I 0.25 TCGA-BF-AAOX-01 10 38647430 38647430 G A HSD17B7P2 RNA 0.26 TCGA-BF-AAOX-01 10 43622132 43622132 G A RET Missense_Mutation p.R1050Q 0.44 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BF-AAOX-01 10 48389963 48389963 C T RBP3 Silent p.V305V 0.25 TCGA-BF-AAOX-01 10 50532056 50532056 G A C10orf71 Missense_Mutation p.R489Q 0.41 tolerated(0.11) benign(0.058) TCGA-BF-AAOX-01 10 50958925 50958925 C T OGDHL Missense_Mutation p.E286K 0.25 tolerated(0.11) benign(0.086) TCGA-BF-AAOX-01 10 54031118 54031118 G C PRKG1 Missense_Mutation p.L394F 0.30 tolerated(0.07) benign(0.111) TCGA-BF-AAOX-01 10 55587279 55587279 C T PCDH15 Missense_Mutation p.R1414Q 0.40 deleterious(0.03) benign(0.298) TCGA-BF-AAOX-01 10 61444022 61444022 C T SLC16A9 Missense_Mutation p.G10R 0.47 deleterious(0.02) probably_damaging(0.972) TCGA-BF-AAOX-01 10 61566772 61566772 G A CCDC6 Silent p.L304L 0.39 TCGA-BF-AAOX-01 10 61828555 61828555 C T ANK3 Silent p.E4028E 0.32 TCGA-BF-AAOX-01 10 62648097 62648097 G A RHOBTB1 Silent p.F443F 0.28 TCGA-BF-AAOX-01 10 63170388 63170388 G A TMEM26 Missense_Mutation p.P267S 0.35 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 10 70644511 70644511 T C STOX1 Missense_Mutation p.L320S 0.34 tolerated(0.07) benign(0.075) TCGA-BF-AAOX-01 10 71244894 71244894 C T TSPAN15 Intron 0.31 TCGA-BF-AAOX-01 10 71255352 71255352 C T TSPAN15 Silent p.T120T 0.24 TCGA-BF-AAOX-01 10 73326627 73326627 C T CDH23 Silent p.I186I 0.37 TCGA-BF-AAOX-01 10 74695213 74695213 G T PLA2G12B 3'UTR 0.27 TCGA-BF-AAOX-01 10 74908086 74908086 G A ECD Missense_Mutation p.S330L 0.29 tolerated(0.08) benign(0.02) TCGA-BF-AAOX-01 10 82330055 82330055 G A SH2D4B Silent p.R110R 0.30 TCGA-BF-AAOX-01 10 85970880 85970880 C T CDHR1 Missense_Mutation p.P482S 0.08 tolerated(0.05) probably_damaging(0.954) TCGA-BF-AAOX-01 10 863757 863757 G A LARP4B Missense_Mutation p.P535S 0.39 deleterious(0.01) benign(0.356) TCGA-BF-AAOX-01 10 88428377 88428377 G A LDB3 Intron 0.43 TCGA-BF-AAOX-01 10 90428385 90428385 G A LIPF Silent p.P108P 0.31 TCGA-BF-AAOX-01 10 93572798 93572798 A T TNKS2 Silent p.A86A 0.26 TCGA-BF-AAOX-01 10 93572799 93572799 C T TNKS2 Missense_Mutation p.R87C 0.25 tolerated(0.06) possibly_damaging(0.667) TCGA-BF-AAOX-01 10 94714403 94714403 G T EXOC6 Missense_Mutation p.D515Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 10 95157163 95157163 G A MYOF Silent p.V424V 0.29 TCGA-BF-AAOX-01 10 95791465 95791465 G A PLCE1 Missense_Mutation p.G221E 0.30 tolerated_low_confidence(1) benign(0.002) TCGA-BF-AAOX-01 10 96030337 96030337 G A PLCE1 Missense_Mutation p.R1495Q 0.41 tolerated(0.13) probably_damaging(0.999) TCGA-BF-AAOX-01 10 96535257 96535257 G A CYP2C19 Missense_Mutation p.E148K 0.29 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 10 96828973 96828973 G A CYP2C8 Intron 0.24 TCGA-BF-AAOX-01 10 98386644 98386644 G A PIK3AP1 Missense_Mutation p.T497I 0.26 tolerated(0.47) benign(0.017) TCGA-BF-AAOX-01 10 98743944 98743944 C T C10orf12 Missense_Mutation p.P933S 0.33 tolerated(0.18) probably_damaging(0.986) TCGA-BF-AAOX-01 11 102195795 102195795 G A BIRC3 Silent p.S185S 0.41 TCGA-BF-AAOX-01 11 102661231 102661231 C T MMP1 Missense_Mutation p.G441E 0.77 deleterious(0.02) possibly_damaging(0.842) TCGA-BF-AAOX-01 11 10597878 10597878 C T MRVI1 3'UTR 0.27 TCGA-BF-AAOX-01 11 10800552 10800552 A G CTR9 Missense_Mutation p.E1141G 0.23 deleterious_low_confidence(0.02) benign(0.403) TCGA-BF-AAOX-01 11 1157599 1157599 C T MUC5AC Silent p.S260S 0.33 TCGA-BF-AAOX-01 11 116706470 116706470 C T APOA1 3'UTR 0.46 TCGA-BF-AAOX-01 11 121008218 121008218 G A TECTA Silent p.V1010V 0.44 TCGA-BF-AAOX-01 11 1213346 1213346 G A MUC5AC RNA 0.05 TCGA-BF-AAOX-01 11 122733180 122733180 G A CRTAM Missense_Mutation p.E221K 0.54 tolerated(0.73) benign(0.005) TCGA-BF-AAOX-01 11 123988158 123988158 G A VWA5A Intron 0.64 TCGA-BF-AAOX-01 11 124267040 124267040 C T OR8B3 Missense_Mutation p.D70N 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAOX-01 11 124412904 124412904 G A OR8B12 Missense_Mutation p.S216F 0.35 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-BF-AAOX-01 11 124743608 124743608 C T ROBO3 Missense_Mutation p.S545L 0.50 tolerated(0.48) benign(0.008) TCGA-BF-AAOX-01 11 124764196 124764196 C T ROBO4 Missense_Mutation p.E407K 0.60 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 11 1262628 1262628 G A MUC5B Silent p.R1506R 0.36 TCGA-BF-AAOX-01 11 128709533 128709533 A C KCNJ1 Silent p.L221L 0.51 TCGA-BF-AAOX-01 11 13513811 13513811 C T PTH 3'UTR 0.31 TCGA-BF-AAOX-01 11 14287138 14287138 C T RP11-21L19.1 Intron 0.46 TCGA-BF-AAOX-01 11 14990410 14990410 C T CALCA Missense_Mutation p.D121N 0.31 tolerated(0.52) probably_damaging(0.929) TCGA-BF-AAOX-01 11 16876514 16876515 - TGGACT PLEKHA7 In_Frame_Ins p.V147_H148insQV 0.23 TCGA-BF-AAOX-01 11 17533597 17533597 C T USH1C Missense_Mutation p.G422E 0.32 deleterious_low_confidence(0) benign(0.015) TCGA-BF-AAOX-01 11 19213890 19213890 G A CSRP3 Missense_Mutation p.H36Y 0.34 tolerated(0.44) benign(0) TCGA-BF-AAOX-01 11 22380965 22380965 C T SLC17A6 Silent p.F155F 0.35 TCGA-BF-AAOX-01 11 26547204 26547204 G A ANO3 Missense_Mutation p.G239R 0.27 tolerated(0.53) benign(0) TCGA-BF-AAOX-01 11 3038354 3038354 G A CARS Silent p.Y633Y 0.24 TCGA-BF-AAOX-01 11 31312326 31312326 C T DCDC1 Silent p.R276R 0.32 TCGA-BF-AAOX-01 11 36614321 36614321 G T RAG2 Silent p.L466L 0.39 TCGA-BF-AAOX-01 11 36614424 36614424 G C RAG2 Missense_Mutation p.P432R 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 11 46397883 46397883 C T DGKZ Silent p.P887P 0.31 TCGA-BF-AAOX-01 11 4944777 4944777 G A OR51G1 Missense_Mutation p.R265C 0.41 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 11 49974797 49974797 A C OR4C13 Missense_Mutation p.M275L 0.28 tolerated_low_confidence(0.11) benign(0.02) TCGA-BF-AAOX-01 11 50003705 50003705 G A OR4C12 Silent p.I111I 0.35 TCGA-BF-AAOX-01 11 5221765 5221765 G A OR51V1 Missense_Mutation p.H56Y 0.33 tolerated(0.44) benign(0.052) TCGA-BF-AAOX-01 11 5443572 5443572 C T OR51Q1 Missense_Mutation p.L48F 0.39 deleterious(0.01) possibly_damaging(0.888) TCGA-BF-AAOX-01 11 55038274 55038274 C T TRIM48 3'UTR 0.30 TCGA-BF-AAOX-01 11 55135942 55135942 C T OR4A15 Missense_Mutation p.P195S 0.22 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-BF-AAOX-01 11 5537037 5537037 G A UBQLNL Missense_Mutation p.S212F 0.36 tolerated(0.05) benign(0.026) TCGA-BF-AAOX-01 11 55371735 55371735 C T OR4C11 Missense_Mutation p.G39R 0.29 deleterious(0) probably_damaging(0.96) TCGA-BF-AAOX-01 11 55406023 55406023 C T OR4P4 Missense_Mutation p.L64F 0.33 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 11 55432823 55432823 C T OR4C6 Missense_Mutation p.L61F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BF-AAOX-01 11 55563892 55563892 G A OR5D14 Silent p.L287L 0.23 TCGA-BF-AAOX-01 11 55872796 55872796 C T OR8H2 Missense_Mutation p.S93F 0.28 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 11 56020386 56020386 G A OR5T3 Silent p.E237E 0.29 TCGA-BF-AAOX-01 11 56114018 56114018 G A OR8K1 Silent p.K168K 0.39 TCGA-BF-AAOX-01 11 56510385 56510385 G A OR9G4 Silent p.N301N 0.37 TCGA-BF-AAOX-01 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.42 TCGA-BF-AAOX-01 11 57582947 57582947 C T CTNND1 Missense_Mutation p.P928L 0.36 deleterious(0.03) benign(0.003) TCGA-BF-AAOX-01 11 57799366 57799366 G A OR6Q1 Nonsense_Mutation p.W314* 0.26 TCGA-BF-AAOX-01 11 58035120 58035120 G A OR10W1 Missense_Mutation p.H71Y 0.24 tolerated(0.06) possibly_damaging(0.661) TCGA-BF-AAOX-01 11 58602239 58602239 C T GLYATL2 Missense_Mutation p.G183E 0.36 deleterious(0) probably_damaging(0.991) TCGA-BF-AAOX-01 11 5862461 5862461 G A OR52E6 Missense_Mutation p.L223F 0.36 deleterious(0.01) probably_damaging(0.958) TCGA-BF-AAOX-01 11 58722297 58722297 G A GLYATL1 Missense_Mutation p.E112K 0.32 deleterious(0.01) benign(0.076) TCGA-BF-AAOX-01 11 5878114 5878114 G A OR52E8 Silent p.I273I 0.36 TCGA-BF-AAOX-01 11 58949518 58949518 C T DTX4 Missense_Mutation p.S173F 0.28 deleterious(0) possibly_damaging(0.809) TCGA-BF-AAOX-01 11 59596910 59596910 C T GIF 3'UTR 0.25 TCGA-BF-AAOX-01 11 60689616 60689616 C T TMEM109 Silent p.A237A 0.56 TCGA-BF-AAOX-01 11 61959602 61959602 T C SCGB1D1 Missense_Mutation p.F44L 0.27 tolerated(1) benign(0.001) TCGA-BF-AAOX-01 11 61978062 61978062 G A SCGB2A1 Missense_Mutation p.G78E 0.40 tolerated(0.97) probably_damaging(0.982) TCGA-BF-AAOX-01 11 62286066 62286066 C T AHNAK Missense_Mutation p.G5275R 0.34 possibly_damaging(0.891) TCGA-BF-AAOX-01 11 62747300 62747300 G A SLC22A6 Silent p.F386F 0.33 TCGA-BF-AAOX-01 11 62782383 62782383 G A SLC22A8 Silent p.F16F 0.41 TCGA-BF-AAOX-01 11 62996844 62996844 G A SLC22A25 Missense_Mutation p.P94L 0.25 deleterious(0.02) benign(0.216) TCGA-BF-AAOX-01 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.35 TCGA-BF-AAOX-01 11 63078590 63078590 G A SLC22A10 3'UTR 0.30 TCGA-BF-AAOX-01 11 63137899 63137899 G A SLC22A9 Missense_Mutation p.R124K 0.31 tolerated(0.12) benign(0.02) TCGA-BF-AAOX-01 11 65000813 65000813 C T SLC22A20 RNA 0.50 TCGA-BF-AAOX-01 11 65380753 65380753 C T MAP3K11 Missense_Mutation p.E159K 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-BF-AAOX-01 11 65780880 65780880 C T CST6 3'UTR 0.26 TCGA-BF-AAOX-01 11 66108739 66108739 G A BRMS1 Missense_Mutation p.P99L 0.36 tolerated(0.11) benign(0.099) TCGA-BF-AAOX-01 11 66249707 66249707 C T DPP3 Silent p.I12I 0.32 TCGA-BF-AAOX-01 11 66322756 66322756 G A CTD-3074O7.2 3'Flank 0.27 TCGA-BF-AAOX-01 11 66322757 66322757 G A CTD-3074O7.2 3'Flank 0.26 TCGA-BF-AAOX-01 11 66359307 66359307 G A CCDC87 Missense_Mutation p.R394C 0.09 deleterious(0.02) possibly_damaging(0.664) TCGA-BF-AAOX-01 11 67074893 67074893 C T SSH3 Silent p.S196S 0.30 TCGA-BF-AAOX-01 11 68582814 68582814 G A CPT1A Silent p.F43F 0.34 TCGA-BF-AAOX-01 11 6913686 6913686 C T OR2D2 Missense_Mutation p.G16R 0.20 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 11 69514090 69514090 C T FGF19 Missense_Mutation p.M197I 0.41 deleterious(0.01) possibly_damaging(0.851) TCGA-BF-AAOX-01 11 7110412 7110412 G A RBMXL2 Missense_Mutation p.E21K 0.29 deleterious(0.01) possibly_damaging(0.881) TCGA-BF-AAOX-01 11 71952293 71952293 C T PHOX2A Silent p.E86E 0.49 TCGA-BF-AAOX-01 11 73681263 73681263 G A DNAJB13 3'UTR 0.25 TCGA-BF-AAOX-01 11 76834832 76834832 G A CAPN5 Silent p.R613R 0.27 TCGA-BF-AAOX-01 11 76893007 76893007 G A MYO7A Missense_Mutation p.R972Q 0.34 tolerated(0.57) benign(0.002) TCGA-BF-AAOX-01 11 7726182 7726182 C T OVCH2 Nonsense_Mutation p.W43* 0.33 TCGA-BF-AAOX-01 11 7984860 7984860 C A NLRP10 Silent p.L61L 0.24 TCGA-BF-AAOX-01 11 82876870 82876870 C T PCF11 Nonsense_Mutation p.Q311* 0.33 TCGA-BF-AAOX-01 11 83170955 83170955 C T DLG2 Missense_Mutation p.G945E 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 11 83182709 83182709 C T DLG2 Silent p.L802L 0.36 TCGA-BF-AAOX-01 12 100774486 100774486 G A SLC17A8 Missense_Mutation p.D37N 0.28 tolerated(0.32) probably_damaging(0.999) TCGA-BF-AAOX-01 12 102025434 102025434 G A MYBPC1 Missense_Mutation p.M100I 0.38 deleterious(0.03) possibly_damaging(0.872) TCGA-BF-AAOX-01 12 104077044 104077044 C T STAB2 Missense_Mutation p.S956L 0.34 deleterious(0.03) possibly_damaging(0.656) TCGA-BF-AAOX-01 12 104077074 104077074 C T STAB2 Missense_Mutation p.P966L 0.27 tolerated(0.61) possibly_damaging(0.842) TCGA-BF-AAOX-01 12 104106207 104106207 G A STAB2 Missense_Mutation p.G1466E 0.34 deleterious(0.01) benign(0.124) TCGA-BF-AAOX-01 12 104136282 104136282 G A STAB2 Missense_Mutation p.G1994E 0.27 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 12 104157331 104157331 C T STAB2 Missense_Mutation p.P2517L 0.33 deleterious(0.01) benign(0.053) TCGA-BF-AAOX-01 12 106995119 106995119 C T RFX4 Missense_Mutation p.S22F 0.30 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BF-AAOX-01 12 10958752 10958752 G A TAS2R8 Silent p.L276L 0.33 TCGA-BF-AAOX-01 12 11138764 11138764 G T TAS2R50 Silent p.I232I 0.31 TCGA-BF-AAOX-01 12 111760347 111760347 C T CUX2 Silent p.L963L 0.47 TCGA-BF-AAOX-01 12 111785791 111785791 C T CUX2 Missense_Mutation p.P1375S 0.28 tolerated_low_confidence(0.66) benign(0.001) TCGA-BF-AAOX-01 12 111951229 111951229 T A ATXN2 Missense_Mutation p.E657V 0.49 probably_damaging(0.98) TCGA-BF-AAOX-01 12 113348968 113348968 G A OAS1 Silent p.Q194Q 0.34 TCGA-BF-AAOX-01 12 11546266 11546266 C T PRB2 Missense_Mutation p.G249E 0.34 deleterious(0.02) unknown(0) TCGA-BF-AAOX-01 12 119961523 119961523 C T CCDC60 Missense_Mutation p.H377Y 0.31 tolerated(0.22) benign(0.001) TCGA-BF-AAOX-01 12 120750864 120750864 G A SIRT4 3'UTR 0.34 TCGA-BF-AAOX-01 12 120903446 120903446 G A SRSF9 Silent p.F111F 0.30 TCGA-BF-AAOX-01 12 121881945 121881945 G A KDM2B Missense_Mutation p.P774L 0.31 tolerated_low_confidence(0.12) benign(0.006) TCGA-BF-AAOX-01 12 121947680 121947680 G A KDM2B Missense_Mutation p.P446L 0.39 tolerated(0.06) benign(0.016) TCGA-BF-AAOX-01 12 122691602 122691602 G A B3GNT4 Silent p.R268R 0.22 TCGA-BF-AAOX-01 12 122735566 122735566 C T VPS33A Silent p.T188T 0.29 TCGA-BF-AAOX-01 12 12483016 12483016 C T MANSC1 Missense_Mutation p.R414K 0.45 deleterious(0) probably_damaging(0.991) TCGA-BF-AAOX-01 12 125449154 125449154 C T DHX37 Missense_Mutation p.E611K 0.29 tolerated(0.15) possibly_damaging(0.719) TCGA-BF-AAOX-01 12 125449155 125449155 C T DHX37 Silent p.P610P 0.29 TCGA-BF-AAOX-01 12 130855774 130855774 C A PIWIL1 Missense_Mutation p.T792K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 12 130855775 130855775 A C PIWIL1 Silent p.T792T 0.25 TCGA-BF-AAOX-01 12 130941115 130941115 G A RIMBP2 Missense_Mutation p.P78L 0.50 tolerated(0.15) benign(0.001) TCGA-BF-AAOX-01 12 13768146 13768146 C T GRIN2B Missense_Mutation p.R519Q 0.33 deleterious(0) probably_damaging(0.991) TCGA-BF-AAOX-01 12 15710403 15710403 G A PTPRO Missense_Mutation p.G858D 0.28 tolerated(0.29) possibly_damaging(0.656) TCGA-BF-AAOX-01 12 15807176 15807176 G A EPS8 Silent p.L385L 0.26 TCGA-BF-AAOX-01 12 18852762 18852762 C T PLCZ1 Silent p.G380G 0.31 TCGA-BF-AAOX-01 12 18891833 18891833 G A CAPZA3 Missense_Mutation p.E211K 0.32 deleterious(0.01) probably_damaging(0.959) TCGA-BF-AAOX-01 12 2113643 2113643 C T DCP1B 5'UTR 0.42 TCGA-BF-AAOX-01 12 21168666 21168666 G A SLCO1B7 Missense_Mutation p.E13K 0.33 deleterious(0.01) benign(0.211) TCGA-BF-AAOX-01 12 22089526 22089526 G A ABCC9 Missense_Mutation p.A28V 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-BF-AAOX-01 12 25241046 25241046 G A LRMP Missense_Mutation p.E110K 0.26 tolerated(0.05) benign(0.006) TCGA-BF-AAOX-01 12 27467549 27467549 C T STK38L Silent p.I210I 0.37 TCGA-BF-AAOX-01 12 32135922 32135922 C T KIAA1551 Missense_Mutation p.S678F 0.44 deleterious(0) probably_damaging(0.991) TCGA-BF-AAOX-01 12 32136488 32136488 C T KIAA1551 Missense_Mutation p.H867Y 0.44 tolerated(0.61) benign(0.006) TCGA-BF-AAOX-01 12 32138605 32138605 C T KIAA1551 Silent p.P1572P 0.29 TCGA-BF-AAOX-01 12 32949227 32949227 C T PKP2 Missense_Mutation p.E769K 0.31 tolerated(0.07) possibly_damaging(0.69) TCGA-BF-AAOX-01 12 33559964 33559964 C T SYT10 Silent p.R279R 0.28 TCGA-BF-AAOX-01 12 38714367 38714367 C T ALG10B Silent p.I258I 0.27 TCGA-BF-AAOX-01 12 44148499 44148499 G A PUS7L Missense_Mutation p.P184S 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 12 4479740 4479740 C T FGF23 Silent p.R175R 0.28 TCGA-BF-AAOX-01 12 4747323 4747323 C T AKAP3 Missense_Mutation p.V14I 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-BF-AAOX-01 12 48880471 48880471 G A C12orf54 Missense_Mutation p.E33K 0.34 tolerated(0.12) possibly_damaging(0.801) TCGA-BF-AAOX-01 12 49220866 49220866 C T CACNB3 Missense_Mutation p.P367L 0.36 deleterious_low_confidence(0.02) benign(0.001) TCGA-BF-AAOX-01 12 49444221 49444221 G A KMT2D Silent p.S1050S 0.36 TCGA-BF-AAOX-01 12 49999265 49999265 G A FAM186B 5'UTR 0.31 TCGA-BF-AAOX-01 12 51384700 51384700 G A SLC11A2 Missense_Mutation p.L514F 0.38 tolerated(0.12) benign(0.037) TCGA-BF-AAOX-01 12 51735042 51735042 C T CELA1 Nonsense_Mutation p.W150* 0.17 TCGA-BF-AAOX-01 12 51883631 51883631 C T SLC4A8 Missense_Mutation p.P866S 0.28 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 12 52470998 52470998 C T C12orf44 3'UTR 0.26 TCGA-BF-AAOX-01 12 52642553 52642553 C T KRT7 3'UTR 0.24 TCGA-BF-AAOX-01 12 52710651 52710651 G A KRT83 Missense_Mutation p.R303C 0.37 deleterious(0.04) benign(0.082) TCGA-BF-AAOX-01 12 52788947 52788947 C T KRT82 Missense_Mutation p.E452K 0.29 tolerated(0.42) benign(0.013) TCGA-BF-AAOX-01 12 52863632 52863632 C T KRT6C Missense_Mutation p.G416R 0.31 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 12 52940278 52940278 C T KRT71 Missense_Mutation p.E373K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAOX-01 12 53298453 53298453 A C KRT8 Missense_Mutation p.F133V 0.22 deleterious(0) possibly_damaging(0.894) TCGA-BF-AAOX-01 12 53565107 53565107 C T CSAD Intron 0.39 TCGA-BF-AAOX-01 12 54379691 54379691 G A HOXC10 Silent p.T216T 0.25 TCGA-BF-AAOX-01 12 54757176 54757176 G A GPR84 Missense_Mutation p.P154S 0.45 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 12 55024706 55024706 C T LACRT Silent p.K129K 0.36 TCGA-BF-AAOX-01 12 55714563 55714563 C T OR6C1 Silent p.F60F 0.40 TCGA-BF-AAOX-01 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.32 TCGA-BF-AAOX-01 12 55945559 55945559 G A OR6C4 Silent p.V183V 0.46 TCGA-BF-AAOX-01 12 56648494 56648494 C T ANKRD52 Silent p.E187E 0.35 TCGA-BF-AAOX-01 12 56981369 56981369 C T RBMS2 Missense_Mutation p.P328L 0.26 deleterious(0.01) benign(0.075) TCGA-BF-AAOX-01 12 57431662 57431662 C T MYO1A Missense_Mutation p.G651E 0.22 deleterious(0.03) benign(0.405) TCGA-BF-AAOX-01 12 58022619 58022619 C T B4GALNT1 Silent p.R293R 0.28 TCGA-BF-AAOX-01 12 58190340 58190340 G A TSFM Missense_Mutation p.G339S 0.14 tolerated(0.69) unknown(0) TCGA-BF-AAOX-01 12 6125295 6125295 C T VWF Silent p.V1805V 0.40 TCGA-BF-AAOX-01 12 62104056 62104056 C T FAM19A2 3'UTR 0.50 TCGA-BF-AAOX-01 12 62104057 62104057 T A FAM19A2 3'UTR 0.49 TCGA-BF-AAOX-01 12 66725223 66725223 C T HELB Missense_Mutation p.P987L 0.30 tolerated(0.22) benign(0.006) TCGA-BF-AAOX-01 12 67699099 67699099 C T CAND1 Missense_Mutation p.R551C 0.32 deleterious(0.02) probably_damaging(1) TCGA-BF-AAOX-01 12 6935421 6935421 G A GPR162 Missense_Mutation p.G373E 0.20 tolerated(0.43) probably_damaging(0.998) TCGA-BF-AAOX-01 12 70928676 70928676 G A PTPRB Silent p.I2047I 0.40 TCGA-BF-AAOX-01 12 70949026 70949026 G A PTPRB Missense_Mutation p.S1686F 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-BF-AAOX-01 12 72680464 72680464 C T TRHDE Silent p.F261F 0.28 TCGA-BF-AAOX-01 12 7280846 7280846 C T RBP5 Missense_Mutation p.R81Q 0.34 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 12 7527519 7527519 C T CD163L1 Missense_Mutation p.G1001E 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 12 7649440 7649440 A C CD163 Missense_Mutation p.N356K 0.32 tolerated(0.46) benign(0.314) TCGA-BF-AAOX-01 12 79813043 79813043 A G SYT1 Intron 0.33 TCGA-BF-AAOX-01 12 80760352 80760352 A G OTOGL Splice_Site p.X2081_splice 0.27 TCGA-BF-AAOX-01 12 81102368 81102368 G A MYF6 Silent p.R195R 0.39 TCGA-BF-AAOX-01 12 81102787 81102787 G A MYF6 3'UTR 0.25 TCGA-BF-AAOX-01 12 81102788 81102788 A G MYF6 3'UTR 0.25 TCGA-BF-AAOX-01 12 81657070 81657070 A T PPFIA2 Missense_Mutation p.L1219I 0.38 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BF-AAOX-01 12 86199390 86199390 A G RASSF9 Missense_Mutation p.L133S 0.29 tolerated(0.11) benign(0.013) TCGA-BF-AAOX-01 12 88420300 88420300 C T C12orf50 Missense_Mutation p.R33Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 12 91357929 91357929 G A EPYC 3'UTR 0.30 TCGA-BF-AAOX-01 12 93147895 93147895 G A PLEKHG7 Silent p.R115R 0.18 TCGA-BF-AAOX-01 12 95914858 95914858 G A USP44 Silent p.I618I 0.39 TCGA-BF-AAOX-01 12 96077382 96077382 C T NTN4 Missense_Mutation p.R429Q 0.42 tolerated(0.06) benign(0.042) TCGA-BF-AAOX-01 13 102378962 102378962 C T FGF14 Missense_Mutation p.V208I 0.26 deleterious(0.05) benign(0.363) TCGA-BF-AAOX-01 13 109779895 109779895 G A MYO16 Missense_Mutation p.E1328K 0.35 deleterious(0.04) benign(0.426) TCGA-BF-AAOX-01 13 111164459 111164459 C T COL4A2 Missense_Mutation p.S1687L 0.36 unknown(0) TCGA-BF-AAOX-01 13 115090446 115090446 C T CHAMP1 Missense_Mutation p.P377S 0.29 tolerated(0.1) benign(0.057) TCGA-BF-AAOX-01 13 19753482 19753482 G A TUBA3C Silent p.V75V 0.34 TCGA-BF-AAOX-01 13 24410456 24410456 G A MIPEP Missense_Mutation p.P526S 0.35 deleterious(0.04) probably_damaging(1) TCGA-BF-AAOX-01 13 25433241 25433241 G A RNF17 Missense_Mutation p.R1238K 0.30 tolerated(0.2) probably_damaging(0.92) TCGA-BF-AAOX-01 13 26975759 26975759 C T CDK8 Nonsense_Mutation p.Q423* 0.40 TCGA-BF-AAOX-01 13 28519355 28519355 G A ATP5EP2 5'UTR 0.29 TCGA-BF-AAOX-01 13 28608231 28608231 T A FLT3 Missense_Mutation p.N609Y 0.34 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 13 31480575 31480575 C T MEDAG 5'UTR 0.38 TCGA-BF-AAOX-01 13 31498490 31498490 C T MEDAG Missense_Mutation p.S277L 0.43 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-BF-AAOX-01 13 39266483 39266483 C T FREM2 Missense_Mutation p.R1668C 0.32 deleterious(0) possibly_damaging(0.835) TCGA-BF-AAOX-01 13 42144757 42144757 T C VWA8 Missense_Mutation p.E1819G 0.49 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 13 43930092 43930092 C T ENOX1 Silent p.S262S 0.25 TCGA-BF-AAOX-01 13 46357439 46357439 G A SIAH3 3'UTR 0.14 TCGA-BF-AAOX-01 13 47361177 47361177 G A ESD Missense_Mutation p.P46S 0.18 deleterious(0) probably_damaging(0.978) TCGA-BF-AAOX-01 13 52604388 52604388 C T UTP14C Missense_Mutation p.P483L 0.43 tolerated(0.76) benign(0.004) TCGA-BF-AAOX-01 13 52604567 52604567 C T UTP14C Missense_Mutation p.R543W 0.29 deleterious(0.03) benign(0.009) TCGA-BF-AAOX-01 13 58208103 58208103 G A PCDH17 Missense_Mutation p.G475R 0.24 deleterious(0.01) benign(0.028) TCGA-BF-AAOX-01 13 70681414 70681414 C T KLHL1 Missense_Mutation p.E140K 0.34 tolerated_low_confidence(0.23) benign(0.009) TCGA-BF-AAOX-01 13 76427457 76427457 A G LMO7 Missense_Mutation p.T1299A 0.26 tolerated(0.94) benign(0.002) TCGA-BF-AAOX-01 13 78477647 78477647 A G EDNRB Silent p.C283C 0.32 TCGA-BF-AAOX-01 13 84453665 84453665 C T SLITRK1 Missense_Mutation p.E660K 0.19 deleterious(0.03) possibly_damaging(0.561) TCGA-BF-AAOX-01 13 86370069 86370069 C T SLITRK6 Missense_Mutation p.G192E 0.32 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 13 92560237 92560237 A C GPC5 Missense_Mutation p.N443H 0.33 deleterious(0.02) probably_damaging(1) TCGA-BF-AAOX-01 13 96274665 96274665 C T DZIP1 Missense_Mutation p.E348K 0.35 deleterious(0.04) possibly_damaging(0.621) TCGA-BF-AAOX-01 13 97485372 97485372 G A HS6ST3 Missense_Mutation p.D446N 0.27 tolerated(0.58) benign(0.045) TCGA-BF-AAOX-01 14 100126708 100126708 G A HHIPL1 Silent p.L489L 0.34 TCGA-BF-AAOX-01 14 100795962 100795962 G C SLC25A47 Missense_Mutation p.A303P 0.31 tolerated(0.21) possibly_damaging(0.512) TCGA-BF-AAOX-01 14 102805461 102805461 A T ZNF839 Missense_Mutation p.R610W 0.53 deleterious(0.02) probably_damaging(0.998) TCGA-BF-AAOX-01 14 102891506 102891506 C T TECPR2 Missense_Mutation p.P277S 0.28 tolerated(0.82) benign(0) TCGA-BF-AAOX-01 14 104195453 104195453 C G ZFYVE21 Missense_Mutation p.H154D 0.30 deleterious(0.01) possibly_damaging(0.73) TCGA-BF-AAOX-01 14 104206394 104206394 G A PPP1R13B Missense_Mutation p.P787S 0.33 tolerated(0.22) benign(0.009) TCGA-BF-AAOX-01 14 105419649 105419649 G A AHNAK2 Silent p.S713S 0.28 TCGA-BF-AAOX-01 14 105419650 105419650 G A AHNAK2 Missense_Mutation p.S713F 0.29 probably_damaging(0.976) TCGA-BF-AAOX-01 14 106110219 106110219 G A IGHG2 Silent p.S133S 0.21 TCGA-BF-AAOX-01 14 106207877 106207877 G A IGHG1 Missense_Mutation p.S309F 0.27 tolerated(0.71) probably_damaging(0.914) TCGA-BF-AAOX-01 14 106641621 106641621 G A IGHV1-18 Missense_Mutation p.A98V 0.34 tolerated(0.16) benign(0.118) TCGA-BF-AAOX-01 14 20344609 20344609 C T OR4K2 Silent p.F61F 0.18 TCGA-BF-AAOX-01 14 20344685 20344685 A G OR4K2 Missense_Mutation p.T87A 0.15 tolerated(0.57) benign(0.001) TCGA-BF-AAOX-01 14 20344884 20344884 T C OR4K2 Missense_Mutation p.V153A 0.16 deleterious(0) benign(0.142) TCGA-BF-AAOX-01 14 20389247 20389247 C A OR4K5 Nonsense_Mutation p.S161* 0.17 TCGA-BF-AAOX-01 14 20404440 20404440 G A OR4K1 Silent p.L205L 0.17 TCGA-BF-AAOX-01 14 20528281 20528281 C T OR4L1 Silent p.F26F 0.41 TCGA-BF-AAOX-01 14 21993455 21993455 C T SALL2 Missense_Mutation p.G136E 0.37 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-BF-AAOX-01 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.27 deleterious(0.04) benign(0.202) TCGA-BF-AAOX-01 14 22279921 22279921 C T TRAV9-1 Missense_Mutation p.S37F 0.36 tolerated(0.39) benign(0.012) TCGA-BF-AAOX-01 14 22356412 22356412 G A TRAV12-2 Missense_Mutation p.E24K 0.22 tolerated(0.32) benign(0.009) TCGA-BF-AAOX-01 14 22466287 22466287 G A TRAV17 Missense_Mutation p.E73K 0.42 tolerated(0.23) probably_damaging(0.999) TCGA-BF-AAOX-01 14 22592233 22592233 C T TRAV26-1 Silent p.I106I 0.20 TCGA-BF-AAOX-01 14 22694662 22694662 G A TRAV36DV7 Missense_Mutation p.M2I 0.34 tolerated(0.34) benign(0.001) TCGA-BF-AAOX-01 14 23467837 23467837 C T C14orf93 Silent p.G132G 0.26 TCGA-BF-AAOX-01 14 23885489 23885489 G A MYH7 Silent p.L1559L 0.26 TCGA-BF-AAOX-01 14 23888394 23888394 C T MYH7 Missense_Mutation p.E1322K 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-BF-AAOX-01 14 23896975 23896975 G A MYH7 Silent p.I569I 0.28 TCGA-BF-AAOX-01 14 23938907 23938907 G A NGDN 5'UTR 0.36 TCGA-BF-AAOX-01 14 24528141 24528141 A G LRRC16B Missense_Mutation p.K506R 0.20 tolerated(0.45) benign(0.026) TCGA-BF-AAOX-01 14 24731312 24731312 G A TGM1 Missense_Mutation p.R83W 0.43 deleterious(0.01) possibly_damaging(0.549) TCGA-BF-AAOX-01 14 24793274 24793274 G A ADCY4 Silent p.T680T 0.27 TCGA-BF-AAOX-01 14 24793275 24793275 G A ADCY4 Missense_Mutation p.T680I 0.27 tolerated(0.53) benign(0) TCGA-BF-AAOX-01 14 32562703 32562703 A G ARHGAP5 Missense_Mutation p.N943S 0.40 tolerated(0.76) benign(0.009) TCGA-BF-AAOX-01 14 33292802 33292802 C T AKAP6 Missense_Mutation p.S1928L 0.33 tolerated(0.22) benign(0.004) TCGA-BF-AAOX-01 14 34263156 34263156 G A NPAS3 Missense_Mutation p.G403R 0.32 deleterious(0) probably_damaging(0.96) TCGA-BF-AAOX-01 14 38724435 38724435 C T CLEC14A Missense_Mutation p.D265N 0.39 tolerated(0.15) benign(0.216) TCGA-BF-AAOX-01 14 39721959 39721959 C T MIA2 Silent p.V525V 0.33 TCGA-BF-AAOX-01 14 50655284 50655284 C T SOS2 Silent p.R215R 0.28 TCGA-BF-AAOX-01 14 56763723 56763723 C T PELI2 Missense_Mutation p.P368S 0.31 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 14 57675385 57675385 G A EXOC5 Missense_Mutation p.S690F 0.31 deleterious(0.01) possibly_damaging(0.722) TCGA-BF-AAOX-01 14 60923719 60923719 G A C14orf39 Missense_Mutation p.P425L 0.33 deleterious(0.02) probably_damaging(0.958) TCGA-BF-AAOX-01 14 63175090 63175090 G A KCNH5 Silent p.P701P 0.24 TCGA-BF-AAOX-01 14 63453887 63453887 C T KCNH5 Missense_Mutation p.R151Q 0.27 tolerated(0.06) possibly_damaging(0.616) TCGA-BF-AAOX-01 14 69792093 69792093 C T GALNT16 Silent p.I158I 0.26 TCGA-BF-AAOX-01 14 70634267 70634267 C T SLC8A3 Missense_Mutation p.M291I 0.25 tolerated(0.33) benign(0.003) TCGA-BF-AAOX-01 14 71137861 71137861 G A TTC9 Missense_Mutation p.E220K 0.22 tolerated(0.13) benign(0.113) TCGA-BF-AAOX-01 14 74971873 74971873 C T LTBP2 Silent p.Q1394Q 0.38 TCGA-BF-AAOX-01 14 75248536 75248536 C T YLPM1 Missense_Mutation p.S597F 0.30 unknown(0) TCGA-BF-AAOX-01 14 76437971 76437971 C T TGFB3 Missense_Mutation p.R148Q 0.49 deleterious(0.02) possibly_damaging(0.875) TCGA-BF-AAOX-01 14 77908901 77908901 A C VIPAS39 Splice_Site p.X245_splice 0.30 TCGA-BF-AAOX-01 14 89068293 89068293 C T ZC3H14 Silent p.V460V 0.38 TCGA-BF-AAOX-01 14 89206879 89206879 C T EML5 Missense_Mutation p.R188Q 0.26 deleterious(0.01) possibly_damaging(0.884) TCGA-BF-AAOX-01 14 91247221 91247221 G A TTC7B Silent p.I102I 0.22 TCGA-BF-AAOX-01 14 91804378 91804378 C T CCDC88C Missense_Mutation p.D341N 0.34 deleterious(0.04) probably_damaging(1) TCGA-BF-AAOX-01 14 94155120 94155120 G A UNC79 Missense_Mutation p.R2202K 0.37 tolerated(0.08) probably_damaging(0.99) TCGA-BF-AAOX-01 14 94155164 94155164 C T UNC79 Missense_Mutation p.P2217S 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAOX-01 14 94245582 94245582 G A PRIMA1 Missense_Mutation p.P57S 0.33 tolerated(0.23) benign(0.057) TCGA-BF-AAOX-01 15 100332827 100332827 G A AC090825.1 3'Flank 0.18 TCGA-BF-AAOX-01 15 100341263 100341263 G A DNM1P46 RNA 0.30 TCGA-BF-AAOX-01 15 102190214 102190214 G A TM2D3 Missense_Mutation p.T107I 0.26 tolerated(0.19) benign(0.01) TCGA-BF-AAOX-01 15 20495382 20495382 G A CHEK2P2 RNA 0.23 TCGA-BF-AAOX-01 15 20649505 20649505 C T HERC2P3 RNA 0.30 TCGA-BF-AAOX-01 15 23890420 23890420 G A MAGEL2 Missense_Mutation p.P221S 0.22 tolerated(0.05) possibly_damaging(0.647) TCGA-BF-AAOX-01 15 24922312 24922312 C T NPAP1 Missense_Mutation p.A433V 0.32 tolerated(0.13) possibly_damaging(0.733) TCGA-BF-AAOX-01 15 24922398 24922398 C T NPAP1 Missense_Mutation p.P462S 0.32 tolerated(0.2) benign(0.026) TCGA-BF-AAOX-01 15 25339203 25339203 T C SNORD116-24 RNA 0.37 TCGA-BF-AAOX-01 15 25492404 25492404 C T SNORD115-40 3'Flank 0.12 TCGA-BF-AAOX-01 15 28270009 28270009 G A OCA2 Silent p.A185A 0.22 TCGA-BF-AAOX-01 15 33795884 33795884 C T RYR3 Missense_Mutation p.S75F 0.30 probably_damaging(0.994) TCGA-BF-AAOX-01 15 33945018 33945018 C T RYR3 Silent p.L1414L 0.31 TCGA-BF-AAOX-01 15 35084474 35084474 C T ACTC1 Missense_Mutation p.E209K 0.19 deleterious_low_confidence(0.01) benign(0.43) TCGA-BF-AAOX-01 15 35086986 35086986 G T ACTC1 Silent p.T8T 0.29 TCGA-BF-AAOX-01 15 35086987 35086987 G A ACTC1 Missense_Mutation p.T8I 0.29 tolerated_low_confidence(0.12) benign(0.046) TCGA-BF-AAOX-01 15 39910106 39910106 G A FSIP1 Missense_Mutation p.S510F 0.26 tolerated(0.25) probably_damaging(0.955) TCGA-BF-AAOX-01 15 40030335 40030335 A G FSIP1 Missense_Mutation p.L283S 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 15 41337258 41337258 G A INO80 Silent p.F917F 0.25 TCGA-BF-AAOX-01 15 41767736 41767736 C T RTF1 Nonsense_Mutation p.Q434* 0.28 TCGA-BF-AAOX-01 15 41828808 41828808 G A RPAP1 Missense_Mutation p.P74L 0.28 tolerated(0.1) benign(0.006) TCGA-BF-AAOX-01 15 42116138 42116138 C T MAPKBP1 Silent p.A1370A 0.38 TCGA-BF-AAOX-01 15 42731745 42731745 G A ZNF106 Missense_Mutation p.P1321S 0.40 tolerated(0.08) benign(0.015) TCGA-BF-AAOX-01 15 43038191 43038191 C T TTBK2 Silent p.R1179R 0.36 TCGA-BF-AAOX-01 15 43873294 43873294 G A PPIP5K1 Missense_Mutation p.R323C 0.42 deleterious(0) probably_damaging(0.994) TCGA-BF-AAOX-01 15 44053620 44053620 A G PDIA3 Splice_Site p.X122_splice 0.24 TCGA-BF-AAOX-01 15 45560443 45560443 G A SLC28A2 Missense_Mutation p.G412E 0.28 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 15 50528360 50528360 C T SLC27A2 3'UTR 0.40 TCGA-BF-AAOX-01 15 51040393 51040393 G A SPPL2A Missense_Mutation p.P123S 0.33 deleterious(0.04) benign(0.113) TCGA-BF-AAOX-01 15 52902207 52902207 G A FAM214A Missense_Mutation p.P302S 0.36 tolerated(0.26) benign(0.057) TCGA-BF-AAOX-01 15 53994445 53994445 C T WDR72 Silent p.G485G 0.34 TCGA-BF-AAOX-01 15 54306261 54306261 G A UNC13C Silent p.R387R 0.31 TCGA-BF-AAOX-01 15 55489166 55489166 C T RSL24D1 5'UTR 0.36 TCGA-BF-AAOX-01 15 57953669 57953669 T C GCOM1 Silent p.L381L 0.26 TCGA-BF-AAOX-01 15 58306165 58306165 C T ALDH1A2 Missense_Mutation p.R85H 0.28 tolerated(0.07) probably_damaging(0.998) TCGA-BF-AAOX-01 15 62241667 62241667 C T VPS13C Silent p.E1578E 0.26 TCGA-BF-AAOX-01 15 63433775 63433775 C A LACTB Missense_Mutation p.T472K 0.33 tolerated(1) benign(0.032) TCGA-BF-AAOX-01 15 66840822 66840822 C T LCTL 3'UTR 0.28 TCGA-BF-AAOX-01 15 70347624 70347624 G A TLE3 Missense_Mutation p.H451Y 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-BF-AAOX-01 15 71124738 71124738 G A LARP6 Missense_Mutation p.P377S 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-BF-AAOX-01 15 72954708 72954708 G A GOLGA6B Silent p.Q321Q 0.65 TCGA-BF-AAOX-01 15 73617762 73617762 C T HCN4 Missense_Mutation p.M538I 0.42 deleterious(0) unknown(0) TCGA-BF-AAOX-01 15 74467420 74467420 C T ISLR Missense_Mutation p.P74L 0.26 tolerated(0.05) benign(0.015) TCGA-BF-AAOX-01 15 74630286 74630286 C T CYP11A1 3'UTR 0.21 TCGA-BF-AAOX-01 15 77134091 77134091 C G SCAPER Missense_Mutation p.S126T 0.21 deleterious(0) possibly_damaging(0.639) TCGA-BF-AAOX-01 15 78640440 78640440 C T CRABP1 3'UTR 0.33 TCGA-BF-AAOX-01 15 78917448 78917448 C T CHRNB4 3'UTR 0.25 TCGA-BF-AAOX-01 15 85669566 85669566 C T PDE8A Silent p.I738I 0.39 TCGA-BF-AAOX-01 15 89400344 89400344 C T ACAN Missense_Mutation p.P1510S 0.44 tolerated(0.16) benign(0.264) TCGA-BF-AAOX-01 15 89400535 89400535 G A ACAN Silent p.R1573R 0.25 TCGA-BF-AAOX-01 15 90272279 90272279 C T WDR93 Missense_Mutation p.P360S 0.36 deleterious(0.04) possibly_damaging(0.57) TCGA-BF-AAOX-01 15 90801450 90801450 C T TTLL13 Silent p.I372I 0.31 TCGA-BF-AAOX-01 15 90903364 90903364 C T ZNF774 Missense_Mutation p.L101F 0.36 tolerated(0.29) benign(0.021) TCGA-BF-AAOX-01 15 91025307 91025307 A G IQGAP1 Missense_Mutation p.I1149V 0.30 deleterious(0.03) possibly_damaging(0.886) TCGA-BF-AAOX-01 15 91438644 91438645 - G FES Splice_Site p.X777_splice 0.08 TCGA-BF-AAOX-01 15 99673193 99673193 C T SYNM Missense_Mutation p.S1542L 0.41 deleterious(0) probably_damaging(0.982) TCGA-BF-AAOX-01 16 10032032 10032032 T C GRIN2A Missense_Mutation p.N264S 0.31 tolerated(0.25) possibly_damaging(0.875) TCGA-BF-AAOX-01 16 1279691 1279691 C T TPSB2 Missense_Mutation p.A37T 0.16 deleterious(0.02) possibly_damaging(0.587) TCGA-BF-AAOX-01 16 16278836 16278836 T G ABCC6 Missense_Mutation p.E641D 0.34 tolerated(0.65) benign(0.002) TCGA-BF-AAOX-01 16 20974898 20974898 C T DNAH3 Missense_Mutation p.M3436I 0.27 tolerated(0.09) benign(0.094) TCGA-BF-AAOX-01 16 20974951 20974951 C T DNAH3 Missense_Mutation p.A3419T 0.60 deleterious(0.01) benign(0.063) TCGA-BF-AAOX-01 16 2236745 2236745 G A CASKIN1 Silent p.F337F 0.25 TCGA-BF-AAOX-01 16 23359989 23359989 G A SCNN1B Silent p.K23K 0.21 TCGA-BF-AAOX-01 16 23619323 23619323 A G PALB2 Missense_Mutation p.F1071S 0.32 deleterious(0) probably_damaging(0.918) TCGA-BF-AAOX-01 16 23718379 23718379 C T ERN2 Missense_Mutation p.E158K 0.75 deleterious(0) probably_damaging(0.981) TCGA-BF-AAOX-01 16 26147239 26147239 C T HS3ST4 Silent p.F347F 0.33 TCGA-BF-AAOX-01 16 27226228 27226228 C T KDM8 Nonsense_Mutation p.R271* 0.16 TCGA-BF-AAOX-01 16 27445726 27445726 C T IL21R Silent p.I36I 0.26 TCGA-BF-AAOX-01 16 30936071 30936071 C T FBXL19 Silent p.P6P 0.25 TCGA-BF-AAOX-01 16 31374395 31374395 G A ITGAX Missense_Mutation p.G500E 0.26 tolerated(0.09) benign(0.162) TCGA-BF-AAOX-01 16 31437427 31437427 C T ITGAD Missense_Mutation p.A1155V 0.20 deleterious_low_confidence(0.01) benign(0.024) TCGA-BF-AAOX-01 16 320756 320756 C T RGS11 Missense_Mutation p.D352N 0.26 tolerated(0.29) probably_damaging(0.957) TCGA-BF-AAOX-01 16 33020899 33020899 A T IGHV3OR16-8 Missense_Mutation p.N103Y 0.36 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-BF-AAOX-01 16 347834 347834 C T AXIN1 Missense_Mutation p.A558T 0.50 deleterious(0.05) benign(0.001) TCGA-BF-AAOX-01 16 4933753 4933753 C T PPL Missense_Mutation p.E1635K 0.35 tolerated(0.18) benign(0.154) TCGA-BF-AAOX-01 16 50346075 50346075 C T ADCY7 Silent p.A859A 0.39 TCGA-BF-AAOX-01 16 50830279 50830279 G A CYLD Missense_Mutation p.E911K 0.19 deleterious(0.02) possibly_damaging(0.669) TCGA-BF-AAOX-01 16 55734159 55734159 G A SLC6A2 Missense_Mutation p.V567I 0.27 tolerated(1) benign(0.001) TCGA-BF-AAOX-01 16 56532466 56532466 G A BBS2 Silent p.L514L 0.43 TCGA-BF-AAOX-01 16 57295951 57295951 G A PLLP Missense_Mutation p.A56V 0.06 deleterious(0) probably_damaging(0.961) TCGA-BF-AAOX-01 16 57756675 57756675 G A CCDC135 Missense_Mutation p.A444T 0.25 deleterious(0.04) probably_damaging(0.923) TCGA-BF-AAOX-01 16 67701361 67701361 G A C16orf86 Missense_Mutation p.E89K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-BF-AAOX-01 16 67916009 67916009 C T EDC4 Missense_Mutation p.P1053S 0.26 tolerated(0.16) benign(0.219) TCGA-BF-AAOX-01 16 68026448 68026448 G A DPEP2 Silent p.L119L 0.32 TCGA-BF-AAOX-01 16 68405629 68405629 C T SMPD3 Silent p.K152K 0.31 TCGA-BF-AAOX-01 16 70955073 70955073 C T HYDIN Silent p.R2402R 0.40 TCGA-BF-AAOX-01 16 70972580 70972580 G A HYDIN Missense_Mutation p.T2311I 0.29 probably_damaging(0.986) TCGA-BF-AAOX-01 16 71103186 71103186 C T HYDIN Missense_Mutation p.G653E 0.20 probably_damaging(0.998) TCGA-BF-AAOX-01 16 71163612 71163612 C T HYDIN Silent p.A386A 0.43 TCGA-BF-AAOX-01 16 72832265 72832265 C T ZFHX3 Missense_Mutation p.R1439Q 0.32 probably_damaging(0.978) TCGA-BF-AAOX-01 16 74455130 74455130 G A CLEC18B Silent p.L13L 0.32 TCGA-BF-AAOX-01 16 75646583 75646583 G A ADAT1 Missense_Mutation p.P201S 0.29 tolerated(0.36) benign(0.341) TCGA-BF-AAOX-01 16 80642052 80642052 C T CDYL2 Nonsense_Mutation p.W433* 0.33 TCGA-BF-AAOX-01 16 80718865 80718865 C T CDYL2 Silent p.K62K 0.28 TCGA-BF-AAOX-01 16 81185504 81185504 A C PKD1L2 RNA 0.24 TCGA-BF-AAOX-01 16 81209294 81209294 C T PKD1L2 Silent p.E89E 0.26 TCGA-BF-AAOX-01 16 81969796 81969796 C T PLCG2 Silent p.I955I 0.26 TCGA-BF-AAOX-01 16 84495693 84495693 C T ATP2C2 Missense_Mutation p.P894S 0.23 tolerated(0.4) probably_damaging(1) TCGA-BF-AAOX-01 16 89579417 89579417 G A SPG7 Silent p.S116S 0.40 TCGA-BF-AAOX-01 17 10399779 10399779 C T MYH1 Missense_Mutation p.E1582K 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAOX-01 17 10400766 10400766 G A MYH1 Silent p.L1457L 0.38 TCGA-BF-AAOX-01 17 10408250 10408250 C T MYH1 Missense_Mutation p.M856I 0.28 deleterious(0.01) benign(0.003) TCGA-BF-AAOX-01 17 10412801 10412801 C T MYH1 Splice_Site p.X529_splice 0.36 TCGA-BF-AAOX-01 17 10428305 10428305 C T MYH2 Silent p.R1580R 0.30 TCGA-BF-AAOX-01 17 10432372 10432372 C T MYH2 Missense_Mutation p.E1127K 0.31 deleterious(0.03) possibly_damaging(0.897) TCGA-BF-AAOX-01 17 11795105 11795105 C T DNAH9 Silent p.I3708I 0.28 TCGA-BF-AAOX-01 17 1372854 1372854 G T MYO1C Silent p.R861R 0.62 TCGA-BF-AAOX-01 17 1651929 1651929 G A SERPINF2 Silent p.Q251Q 0.60 TCGA-BF-AAOX-01 17 17415827 17415827 G A PEMT Silent p.F154F 0.33 TCGA-BF-AAOX-01 17 20805643 20805643 G A RP11-344E13.3 RNA 0.34 TCGA-BF-AAOX-01 17 28613849 28613849 C T BLMH Missense_Mutation p.D179N 0.27 tolerated(0.51) benign(0.062) TCGA-BF-AAOX-01 17 30380292 30380292 C T LRRC37B Missense_Mutation p.S930L 0.39 deleterious(0.01) benign(0.004) TCGA-BF-AAOX-01 17 33310276 33310276 C T LIG3 Silent p.G84G 0.41 TCGA-BF-AAOX-01 17 33433411 33433411 G A RAD51L3-RFFL Silent p.A31A 0.36 TCGA-BF-AAOX-01 17 33771966 33771966 A T SLFN13 Missense_Mutation p.L245H 0.33 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 17 33772326 33772326 G A SLFN13 Missense_Mutation p.S125F 0.31 tolerated(0.23) benign(0.006) TCGA-BF-AAOX-01 17 34943466 34943466 C T GGNBP2 Nonsense_Mutation p.R561* 0.33 TCGA-BF-AAOX-01 17 36963146 36963146 G A CWC25 Silent p.S258S 0.42 TCGA-BF-AAOX-01 17 37825892 37825892 C T PNMT Silent p.S71S 0.17 TCGA-BF-AAOX-01 17 39019425 39019425 C T KRT12 Silent p.L422L 0.27 TCGA-BF-AAOX-01 17 39521693 39521693 G A KRT33B Missense_Mutation p.A234V 0.24 tolerated(0.05) possibly_damaging(0.515) TCGA-BF-AAOX-01 17 39635182 39635182 A T KRT35 Silent p.P259P 0.38 TCGA-BF-AAOX-01 17 39881189 39881189 C T HAP1 Missense_Mutation p.E542K 0.31 deleterious(0) possibly_damaging(0.486) TCGA-BF-AAOX-01 17 41001156 41001156 C T AOC2 Missense_Mutation p.P548S 0.56 deleterious(0) possibly_damaging(0.783) TCGA-BF-AAOX-01 17 41001157 41001157 C T AOC2 Missense_Mutation p.P548L 0.53 deleterious(0) probably_damaging(0.98) TCGA-BF-AAOX-01 17 42854606 42854606 G A ADAM11 Missense_Mutation p.G585E 0.36 tolerated(0.13) benign(0.06) TCGA-BF-AAOX-01 17 46023344 46023344 C T PNPO Missense_Mutation p.P179S 0.32 tolerated(0.07) possibly_damaging(0.844) TCGA-BF-AAOX-01 17 46056225 46056225 C T CDK5RAP3 Missense_Mutation p.A340V 0.33 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 17 46627943 46627943 G A HOXB3 Missense_Mutation p.P350L 0.36 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 17 47121335 47121335 C T IGF2BP1 Missense_Mutation p.P403S 0.45 tolerated(0.07) benign(0.009) TCGA-BF-AAOX-01 17 48141535 48141535 G A ITGA3 Missense_Mutation p.D101N 0.44 tolerated(0.65) benign(0.002) TCGA-BF-AAOX-01 17 48151298 48151298 C T ITGA3 Missense_Mutation p.P392L 0.35 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 17 48701318 48701318 G A CACNA1G Silent p.R2037R 0.27 TCGA-BF-AAOX-01 17 48918360 48918360 G A WFIKKN2 Missense_Mutation p.E571K 0.31 deleterious(0.03) benign(0.16) TCGA-BF-AAOX-01 17 55183113 55183113 C T AKAP1 Silent p.L96L 0.59 TCGA-BF-AAOX-01 17 55183114 55183114 C T AKAP1 Nonsense_Mutation p.Q97* 0.59 TCGA-BF-AAOX-01 17 56060611 56060611 T A VEZF1 Missense_Mutation p.L59F 0.46 deleterious(0.01) possibly_damaging(0.895) TCGA-BF-AAOX-01 17 56232900 56232900 C T OR4D1 Missense_Mutation p.P129L 0.51 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 17 56247910 56247910 G A OR4D2 Silent p.V298V 0.20 TCGA-BF-AAOX-01 17 56350859 56350859 C T MPO Missense_Mutation p.D513N 0.31 tolerated(0.21) benign(0.03) TCGA-BF-AAOX-01 17 56358023 56358023 G A MPO Silent p.L33L 0.54 TCGA-BF-AAOX-01 17 5983889 5983889 G A WSCD1 5'UTR 0.17 TCGA-BF-AAOX-01 17 60348803 60348803 C T TBC1D3P2 RNA 0.19 TCGA-BF-AAOX-01 17 60501613 60501613 G A METTL2A Silent p.A48A 0.21 TCGA-BF-AAOX-01 17 60813376 60813376 C T MARCH10 Missense_Mutation p.R618K 0.25 tolerated(0.05) benign(0.164) TCGA-BF-AAOX-01 17 60813636 60813636 G A MARCH10 Silent p.F531F 0.44 TCGA-BF-AAOX-01 17 60814294 60814294 G A MARCH10 Missense_Mutation p.S312F 0.47 tolerated(0.1) benign(0.086) TCGA-BF-AAOX-01 17 61908926 61908926 C A PSMC5 Missense_Mutation p.L344M 0.23 tolerated(0.06) benign(0.131) TCGA-BF-AAOX-01 17 61987465 61987465 C T CSHL1 Intron 0.15 TCGA-BF-AAOX-01 17 6386917 6386917 G A PITPNM3 Silent p.F169F 0.17 TCGA-BF-AAOX-01 17 66267395 66267395 G A SLC16A6 Silent p.L302L 0.40 TCGA-BF-AAOX-01 17 66352902 66352902 C T ARSG Nonsense_Mutation p.Q221* 0.26 TCGA-BF-AAOX-01 17 68172013 68172013 C T KCNJ2 Missense_Mutation p.P278L 0.16 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 17 6928503 6928503 G A BCL6B Silent p.R291R 0.39 TCGA-BF-AAOX-01 17 6930281 6930281 C T BCL6B Missense_Mutation p.R400W 0.33 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOX-01 17 71380038 71380038 C T SDK2 Missense_Mutation p.G1561E 0.24 tolerated(0.41) benign(0.155) TCGA-BF-AAOX-01 17 71390461 71390461 G A SDK2 Missense_Mutation p.P1199S 0.31 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 17 72700871 72700871 C T CD300LF Missense_Mutation p.R43K 0.24 tolerated(0.9) benign(0) TCGA-BF-AAOX-01 17 72860138 72860138 G A FDXR Missense_Mutation p.P395S 0.24 tolerated(0.15) benign(0.06) TCGA-BF-AAOX-01 17 73625036 73625036 C T RECQL5 Missense_Mutation p.E823K 0.36 tolerated(0.19) benign(0.013) TCGA-BF-AAOX-01 17 73739928 73739928 G C ITGB4 Missense_Mutation p.A1033P 0.25 deleterious(0.03) probably_damaging(0.926) TCGA-BF-AAOX-01 17 73780812 73780812 G A UNK 5'Flank 0.20 TCGA-BF-AAOX-01 17 73818632 73818632 T G UNK Missense_Mutation p.F638V 0.16 tolerated(0.49) benign(0.041) TCGA-BF-AAOX-01 17 73818663 73818663 C G UNK Missense_Mutation p.A648G 0.19 deleterious(0.04) benign(0.233) TCGA-BF-AAOX-01 17 73818665 73818665 C T UNK Nonsense_Mutation p.R649* 0.19 TCGA-BF-AAOX-01 17 74288161 74288161 G A QRICH2 Nonsense_Mutation p.Q717* 0.15 TCGA-BF-AAOX-01 17 74386961 74386961 G A UBE2O 3'UTR 0.21 TCGA-BF-AAOX-01 17 74470587 74470587 G A RHBDF2 Silent p.F473F 0.16 TCGA-BF-AAOX-01 17 76450557 76450557 C T DNAH17 Silent p.Q3453Q 0.12 TCGA-BF-AAOX-01 17 76455146 76455146 C T DNAH17 Silent p.E3252E 0.33 TCGA-BF-AAOX-01 17 76471376 76471376 C T DNAH17 Missense_Mutation p.G2818E 0.20 possibly_damaging(0.554) TCGA-BF-AAOX-01 17 7691220 7691220 C T DNAH2 Missense_Mutation p.P2216S 0.21 probably_damaging(0.999) TCGA-BF-AAOX-01 17 7749435 7749435 C T KDM6B Silent p.S92S 0.24 TCGA-BF-AAOX-01 17 79226285 79226285 G A SLC38A10 Missense_Mutation p.P552L 0.52 deleterious(0.05) benign(0.001) TCGA-BF-AAOX-01 17 79226286 79226286 G A SLC38A10 Missense_Mutation p.P552S 0.51 deleterious(0.03) benign(0.027) TCGA-BF-AAOX-01 17 9757904 9757904 C T GLP2R Silent p.L199L 0.31 TCGA-BF-AAOX-01 18 14479201 14479201 G A CXADRP3 RNA 0.61 TCGA-BF-AAOX-01 18 21293987 21293987 C T LAMA3 Missense_Mutation p.S133F 0.31 probably_damaging(1) TCGA-BF-AAOX-01 18 21526223 21526223 G A LAMA3 Missense_Mutation p.G3109E 0.33 probably_damaging(1) TCGA-BF-AAOX-01 18 24722668 24722668 C T CHST9 Missense_Mutation p.E36K 0.21 deleterious(0.02) possibly_damaging(0.813) TCGA-BF-AAOX-01 18 28574222 28574222 C T DSC3 Silent p.K870K 0.35 TCGA-BF-AAOX-01 18 28584189 28584189 G A DSC3 Missense_Mutation p.R678C 0.26 deleterious(0.03) benign(0.247) TCGA-BF-AAOX-01 18 28587091 28587091 C T DSC3 Missense_Mutation p.R557K 0.31 tolerated(0.59) benign(0.058) TCGA-BF-AAOX-01 18 2892339 2892339 G A EMILIN2 Nonsense_Mutation p.W738* 0.26 TCGA-BF-AAOX-01 18 28993439 28993439 C T DSG4 Nonsense_Mutation p.Q1021* 0.31 TCGA-BF-AAOX-01 18 29121157 29121157 G A DSG2 Silent p.L627L 0.35 TCGA-BF-AAOX-01 18 29122752 29122752 G A DSG2 Missense_Mutation p.M757I 0.28 tolerated(0.42) benign(0.03) TCGA-BF-AAOX-01 18 29848633 29848633 G A GAREM Missense_Mutation p.P611L 0.23 deleterious(0.05) benign(0.356) TCGA-BF-AAOX-01 18 32833553 32833553 G A ZSCAN30 Missense_Mutation p.S449F 0.31 deleterious(0.05) probably_damaging(0.911) TCGA-BF-AAOX-01 18 32844125 32844125 C T ZSCAN30 Silent p.E64E 0.33 TCGA-BF-AAOX-01 18 33751067 33751067 G A ELP2 Silent p.K821K 0.31 TCGA-BF-AAOX-01 18 40503582 40503582 G T RIT2 Silent p.P127P 0.31 TCGA-BF-AAOX-01 18 40503608 40503608 G A RIT2 Nonsense_Mutation p.Q119* 0.31 TCGA-BF-AAOX-01 18 42532555 42532555 C A SETBP1 Missense_Mutation p.P1084T 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAOX-01 18 43205648 43205648 G A SLC14A2 Missense_Mutation p.D51N 0.45 tolerated(0.15) benign(0.002) TCGA-BF-AAOX-01 18 43253689 43253689 C T SLC14A2 Silent p.L807L 0.43 TCGA-BF-AAOX-01 18 43446786 43446786 G A EPG5 Missense_Mutation p.P2200S 0.28 tolerated(0.57) benign(0.126) TCGA-BF-AAOX-01 18 44030275 44030275 G A RNF165 Missense_Mutation p.R211Q 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-BF-AAOX-01 18 44559301 44559301 C T TCEB3B 3'UTR 0.30 TCGA-BF-AAOX-01 18 45566850 45566850 G A ZBTB7C Missense_Mutation p.S210F 0.34 tolerated(0.17) benign(0.085) TCGA-BF-AAOX-01 18 47017669 47017669 T C RPL17 Intron 0.35 TCGA-BF-AAOX-01 18 47107891 47107891 C T LIPG Silent p.S300S 0.32 TCGA-BF-AAOX-01 18 47463701 47463701 C T MYO5B Missense_Mutation p.G607R 0.30 tolerated(0.4) benign(0.009) TCGA-BF-AAOX-01 18 47777208 47777208 C T CCDC11 Missense_Mutation p.E306K 0.35 deleterious(0) possibly_damaging(0.756) TCGA-BF-AAOX-01 18 47787468 47787468 C T CCDC11 Missense_Mutation p.D147N 0.30 tolerated(0.29) benign(0.006) TCGA-BF-AAOX-01 18 50278496 50278496 G A DCC Missense_Mutation p.G55E 0.29 tolerated(0.23) benign(0.124) TCGA-BF-AAOX-01 18 5423405 5423405 A C EPB41L3 Silent p.R437R 0.25 TCGA-BF-AAOX-01 18 54362244 54362251 CTGGAATT - WDR7 Frame_Shift_Del p.A391Dfs*10 0.30 TCGA-BF-AAOX-01 18 55024615 55024615 G A ST8SIA3 Silent p.R258R 0.34 TCGA-BF-AAOX-01 18 56184161 56184161 C T ALPK2 Silent p.R1973R 0.34 TCGA-BF-AAOX-01 18 56204265 56204265 G A ALPK2 Missense_Mutation p.P1052S 0.35 tolerated(0.1) possibly_damaging(0.884) TCGA-BF-AAOX-01 18 56246520 56246520 C T ALPK2 Missense_Mutation p.M496I 0.36 tolerated(0.27) benign(0.008) TCGA-BF-AAOX-01 18 56985698 56985698 C T CPLX4 5'UTR 0.33 TCGA-BF-AAOX-01 18 57006018 57006018 C T LMAN1 Missense_Mutation p.A375T 0.32 tolerated(0.38) benign(0.001) TCGA-BF-AAOX-01 18 60241344 60241346 GTT - ZCCHC2 In_Frame_Del p.G677_Y678delinsD 0.48 TCGA-BF-AAOX-01 18 61170874 61170874 T G SERPINB5 Missense_Mutation p.N349K 0.32 tolerated(0.53) benign(0.002) TCGA-BF-AAOX-01 18 61323292 61323292 C T SERPINB3 Missense_Mutation p.E258K 0.38 tolerated(0.09) probably_damaging(0.953) TCGA-BF-AAOX-01 18 61388194 61388194 C T SERPINB11 Missense_Mutation p.P250S 0.30 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 18 67563260 67563260 G A CD226 Missense_Mutation p.P135L 0.24 tolerated(0.17) benign(0.081) TCGA-BF-AAOX-01 18 77137315 77137315 C T ATP9B Missense_Mutation p.P1126S 0.26 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 18 77894810 77894810 C T ADNP2 Missense_Mutation p.P505L 0.33 deleterious(0.01) possibly_damaging(0.802) TCGA-BF-AAOX-01 19 10071105 10071105 G A COL5A3 Silent p.P1740P 0.36 TCGA-BF-AAOX-01 19 10078715 10078715 G A COL5A3 Missense_Mutation p.P1452L 0.40 unknown(0) TCGA-BF-AAOX-01 19 10097013 10097013 G A COL5A3 Missense_Mutation p.P777L 0.39 unknown(0) TCGA-BF-AAOX-01 19 10108662 10108662 G C COL5A3 Missense_Mutation p.Q400E 0.29 unknown(0) TCGA-BF-AAOX-01 19 10472847 10472847 A C TYK2 Missense_Mutation p.N560K 0.33 deleterious(0.02) possibly_damaging(0.721) TCGA-BF-AAOX-01 19 1091805 1091805 G A POLR2E Missense_Mutation p.P112S 0.35 tolerated(0.11) possibly_damaging(0.468) TCGA-BF-AAOX-01 19 1095371 1095371 G A POLR2E 5'UTR 0.37 TCGA-BF-AAOX-01 19 11289248 11289248 G A KANK2 Silent p.S466S 0.40 TCGA-BF-AAOX-01 19 12767411 12767411 G A MAN2B1 Missense_Mutation p.P540S 0.37 tolerated(0.12) possibly_damaging(0.679) TCGA-BF-AAOX-01 19 12775621 12775621 G A MAN2B1 Silent p.A205A 0.50 TCGA-BF-AAOX-01 19 13419266 13419266 C T CACNA1A Missense_Mutation p.R582Q 0.39 probably_damaging(0.947) TCGA-BF-AAOX-01 19 1432611 1432611 C T DAZAP1 Missense_Mutation p.P324S 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-BF-AAOX-01 19 14744101 14744101 G A EMR3 Silent p.L500L 0.29 TCGA-BF-AAOX-01 19 14829260 14829260 C T ZNF333 Missense_Mutation p.S374F 0.28 deleterious(0.04) possibly_damaging(0.841) TCGA-BF-AAOX-01 19 15166270 15166270 G A CASP14 Missense_Mutation p.G184S 0.26 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 19 15852834 15852834 G A OR10H3 Missense_Mutation p.G211D 0.34 tolerated(0.13) possibly_damaging(0.795) TCGA-BF-AAOX-01 19 15918159 15918159 G A OR10H1 Missense_Mutation p.P230L 0.34 deleterious(0) probably_damaging(0.969) TCGA-BF-AAOX-01 19 16630978 16630978 G A CHERP Missense_Mutation p.S815F 0.26 deleterious(0.01) benign(0.184) TCGA-BF-AAOX-01 19 16860881 16860881 G A NWD1 Silent p.L476L 0.32 TCGA-BF-AAOX-01 19 17169429 17169429 G A HAUS8 Missense_Mutation p.A192V 0.30 tolerated(1) benign(0.021) TCGA-BF-AAOX-01 19 17476311 17476311 C T PLVAP Silent p.A321A 0.33 TCGA-BF-AAOX-01 19 17660331 17660331 G A FAM129C Missense_Mutation p.G613E 0.36 tolerated(0.16) benign(0.009) TCGA-BF-AAOX-01 19 17735722 17735722 C T UNC13A Silent p.L1371L 0.36 TCGA-BF-AAOX-01 19 17954668 17954668 C T JAK3 Missense_Mutation p.E76K 0.26 deleterious(0) probably_damaging(0.939) TCGA-BF-AAOX-01 19 17973025 17973025 C T RPL18A Silent p.T107T 0.30 TCGA-BF-AAOX-01 19 18173050 18173050 G A IL12RB1 Silent p.S552S 0.55 TCGA-BF-AAOX-01 19 19313641 19313641 G A NR2C2AP Missense_Mutation p.L30F 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-BF-AAOX-01 19 19337583 19337583 G A NCAN Missense_Mutation p.S454N 0.18 tolerated(0.1) benign(0.006) TCGA-BF-AAOX-01 19 19646197 19646197 C T YJEFN3 Missense_Mutation p.R161W 0.13 deleterious(0.04) possibly_damaging(0.806) TCGA-BF-AAOX-01 19 19756737 19756737 G A ATP13A1 Silent p.T1102T 0.23 TCGA-BF-AAOX-01 19 19758415 19758415 G A ATP13A1 Missense_Mutation p.S929F 0.22 tolerated(0.08) benign(0.091) TCGA-BF-AAOX-01 19 21299788 21299788 G A ZNF714 Silent p.Q106Q 0.26 TCGA-BF-AAOX-01 19 22156554 22156554 C T ZNF208 Missense_Mutation p.E428K 0.32 tolerated(0.65) benign(0.295) TCGA-BF-AAOX-01 19 22363605 22363605 C T ZNF676 Missense_Mutation p.G305E 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-BF-AAOX-01 19 22364070 22364070 A T ZNF676 Missense_Mutation p.F150Y 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-BF-AAOX-01 19 22940570 22940570 A T ZNF99 Missense_Mutation p.F714Y 0.33 deleterious(0.03) benign(0.171) TCGA-BF-AAOX-01 19 23328941 23328941 G A ZNF730 Silent p.G365G 0.26 TCGA-BF-AAOX-01 19 23927358 23927358 G A ZNF681 Missense_Mutation p.H332Y 0.23 deleterious(0.01) benign(0.371) TCGA-BF-AAOX-01 19 23937631 23937631 G A ZNF681 Missense_Mutation p.P74S 0.21 tolerated(0.14) possibly_damaging(0.857) TCGA-BF-AAOX-01 19 2877696 2877696 G A ZNF556 Missense_Mutation p.R247H 0.58 deleterious(0.02) probably_damaging(0.962) TCGA-BF-AAOX-01 19 31039084 31039084 G A ZNF536 Missense_Mutation p.G853D 0.26 tolerated(0.11) benign(0.424) TCGA-BF-AAOX-01 19 32949392 32949392 C T DPY19L3 Silent p.F433F 0.29 TCGA-BF-AAOX-01 19 33512536 33512536 G A RHPN2 Missense_Mutation p.P111S 0.37 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 19 3578043 3578043 C T HMG20B Silent p.I291I 0.30 TCGA-BF-AAOX-01 19 36042442 36042442 G A ATP4A Missense_Mutation p.T931I 0.50 deleterious(0) probably_damaging(0.953) TCGA-BF-AAOX-01 19 36050871 36050871 C T ATP4A Missense_Mutation p.E298K 0.27 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 19 36322579 36322579 G A NPHS1 Silent p.V1084V 0.35 TCGA-BF-AAOX-01 19 36341277 36341277 C T NPHS1 Silent p.E199E 0.34 TCGA-BF-AAOX-01 19 36398373 36398373 G A TYROBP Silent p.V68V 0.32 TCGA-BF-AAOX-01 19 37618101 37618101 T C ZNF420 Missense_Mutation p.W70R 0.44 tolerated(0.43) possibly_damaging(0.608) TCGA-BF-AAOX-01 19 37975616 37975616 G A ZNF570 Silent p.G364G 0.25 TCGA-BF-AAOX-01 19 39008181 39008181 G A RYR1 Missense_Mutation p.E3290K 0.43 benign(0.021) TCGA-BF-AAOX-01 19 40319052 40319052 G A DYRK1B Missense_Mutation p.P231L 0.42 deleterious(0) probably_damaging(0.953) TCGA-BF-AAOX-01 19 40430416 40430416 G A FCGBP Silent p.P509P 0.53 TCGA-BF-AAOX-01 19 41062088 41062088 G A SPTBN4 Nonsense_Mutation p.W1728* 0.30 TCGA-BF-AAOX-01 19 41062089 41062089 G A SPTBN4 Nonsense_Mutation p.W1728* 0.29 TCGA-BF-AAOX-01 19 41381556 41381556 C T CYP2A7 3'UTR 0.14 TCGA-BF-AAOX-01 19 41510206 41510206 G A CYP2B6 Silent p.V113V 0.22 TCGA-BF-AAOX-01 19 4157161 4157161 C T CREB3L3 Missense_Mutation p.S109F 0.40 deleterious(0.03) benign(0.31) TCGA-BF-AAOX-01 19 4210115 4210115 C T ANKRD24 Missense_Mutation p.P311S 0.44 deleterious(0.01) possibly_damaging(0.857) TCGA-BF-AAOX-01 19 4216918 4216918 G A ANKRD24 Silent p.T587T 0.38 TCGA-BF-AAOX-01 19 42355809 42355809 G A DMRTC2 3'UTR 0.29 TCGA-BF-AAOX-01 19 42492639 42492639 C T ATP1A3 Missense_Mutation p.E41K 0.34 deleterious(0) benign(0.348) TCGA-BF-AAOX-01 19 42752785 42752785 G A ERF Silent p.R493R 0.40 TCGA-BF-AAOX-01 19 42911459 42911459 C T LIPE Silent p.K668K 0.30 TCGA-BF-AAOX-01 19 43372971 43372971 G A PSG1 Nonsense_Mutation p.Q309* 0.30 TCGA-BF-AAOX-01 19 43679387 43679387 G A PSG5 Missense_Mutation p.S315F 0.30 tolerated(0.32) benign(0.068) TCGA-BF-AAOX-01 19 44352000 44352000 C T ZNF283 Missense_Mutation p.S416L 0.31 deleterious(0.04) benign(0.212) TCGA-BF-AAOX-01 19 44611256 44611256 C T ZNF224 Missense_Mutation p.P315S 0.29 deleterious(0.02) benign(0.336) TCGA-BF-AAOX-01 19 47181874 47181874 G A PRKD2 Missense_Mutation p.S706L 0.46 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 19 48640930 48640930 G A LIG1 Missense_Mutation p.S368F 0.39 tolerated(0.19) benign(0.023) TCGA-BF-AAOX-01 19 49797225 49797225 G A SLC6A16 Missense_Mutation p.P493S 0.35 tolerated(0.22) benign(0.001) TCGA-BF-AAOX-01 19 50461988 50461988 G A SIGLEC11 Silent p.P425P 0.30 TCGA-BF-AAOX-01 19 5111835 5111835 C T KDM4B Intron 0.25 TCGA-BF-AAOX-01 19 51329191 51329191 C T KLK15 Missense_Mutation p.G211E 0.33 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 19 51411961 51411961 G A KLK4 Missense_Mutation p.L117F 0.26 deleterious(0) probably_damaging(0.982) TCGA-BF-AAOX-01 19 51470560 51470560 T C KLK6 Missense_Mutation p.K21R 0.34 tolerated(0.14) probably_damaging(0.998) TCGA-BF-AAOX-01 19 51528882 51528882 C T KLK11 Silent p.R34R 0.43 TCGA-BF-AAOX-01 19 51563834 51563834 G A KLK13 Missense_Mutation p.T32I 0.38 deleterious(0) possibly_damaging(0.617) TCGA-BF-AAOX-01 19 51918195 51918195 C A SIGLEC10 Missense_Mutation p.G500W 0.50 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 19 52034163 52034163 G A SIGLEC6 Missense_Mutation p.H160Y 0.28 tolerated(0.16) benign(0.152) TCGA-BF-AAOX-01 19 52249116 52249116 G A FPR1 3'UTR 0.22 TCGA-BF-AAOX-01 19 52443949 52443949 C T ZNF613 Silent p.S74S 0.42 TCGA-BF-AAOX-01 19 52497830 52497830 G A ZNF615 Missense_Mutation p.H178Y 0.21 tolerated(0.3) benign(0.007) TCGA-BF-AAOX-01 19 53270753 53270753 G A ZNF600 Nonsense_Mutation p.Q86* 0.30 TCGA-BF-AAOX-01 19 53304318 53304318 G A ZNF28 Silent p.C260C 0.25 TCGA-BF-AAOX-01 19 53770590 53770590 C T VN1R4 Missense_Mutation p.S110N 0.41 tolerated(0.06) possibly_damaging(0.657) TCGA-BF-AAOX-01 19 53855791 53855791 C T ZNF845 Silent p.Y621Y 0.27 TCGA-BF-AAOX-01 19 54327237 54327237 G A NLRP12 Silent p.F64F 0.36 TCGA-BF-AAOX-01 19 54403691 54403691 C T PRKCG Silent p.I464I 0.21 TCGA-BF-AAOX-01 19 54760486 54760486 G A LILRB5 Missense_Mutation p.P74L 0.36 tolerated(0.09) possibly_damaging(0.66) TCGA-BF-AAOX-01 19 54803260 54803260 C T LILRA3 Silent p.G139G 0.34 TCGA-BF-AAOX-01 19 54818742 54818742 C T LILRA5 Missense_Mutation p.D286N 0.38 tolerated(0.14) benign(0.191) TCGA-BF-AAOX-01 19 55021819 55021819 G A LAIR2 3'UTR 0.21 TCGA-BF-AAOX-01 19 55086762 55086762 C T LILRA2 Missense_Mutation p.P232L 0.34 deleterious(0.03) possibly_damaging(0.838) TCGA-BF-AAOX-01 19 55396750 55396750 C T FCAR Silent p.T58T 0.39 TCGA-BF-AAOX-01 19 55435131 55435131 G A NLRP7 Missense_Mutation p.P1031S 0.35 tolerated(0.79) benign(0.001) TCGA-BF-AAOX-01 19 55447654 55447654 G A NLRP7 Missense_Mutation p.H759Y 0.35 tolerated(0.06) benign(0.014) TCGA-BF-AAOX-01 19 55590399 55590399 G A EPS8L1 Missense_Mutation p.A31T 0.24 tolerated(0.19) possibly_damaging(0.637) TCGA-BF-AAOX-01 19 55889456 55889456 C T TMEM190 Missense_Mutation p.S140F 0.33 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-BF-AAOX-01 19 56465939 56465939 G A NLRP8 Missense_Mutation p.G172E 0.36 deleterious(0) probably_damaging(0.986) TCGA-BF-AAOX-01 19 56561877 56561877 G A NLRP5 Missense_Mutation p.M1017I 0.25 tolerated(0.18) benign(0.076) TCGA-BF-AAOX-01 19 5684820 5684820 C T HSD11B1L Intron 0.28 TCGA-BF-AAOX-01 19 56935300 56935300 C T ZNF583 Nonsense_Mutation p.Q425* 0.31 TCGA-BF-AAOX-01 19 57327571 57327571 C T PEG3 Missense_Mutation p.E747K 0.31 tolerated(0.07) benign(0.195) TCGA-BF-AAOX-01 19 58596599 58596599 G A ZSCAN18 Missense_Mutation p.P385L 0.48 tolerated(1) benign(0.039) TCGA-BF-AAOX-01 19 58805968 58805968 C T ZNF8 Missense_Mutation p.S265L 0.26 deleterious(0.01) possibly_damaging(0.794) TCGA-BF-AAOX-01 19 6678175 6678175 C T C3 Missense_Mutation p.G1613E 0.37 tolerated(0.94) benign(0.043) TCGA-BF-AAOX-01 19 6681958 6681958 C T C3 Silent p.L1448L 0.31 TCGA-BF-AAOX-01 19 6825111 6825111 G A VAV1 Silent p.E234E 0.41 TCGA-BF-AAOX-01 19 6837032 6837032 C T VAV1 Missense_Mutation p.P651S 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 19 6928249 6928249 G A EMR1 Intron 0.37 TCGA-BF-AAOX-01 19 7535029 7535029 C T ARHGEF18 Missense_Mutation p.P1123S 0.22 tolerated(0.1) benign(0.245) TCGA-BF-AAOX-01 19 7535030 7535030 C T ARHGEF18 Missense_Mutation p.P1123L 0.22 tolerated(0.11) benign(0.003) TCGA-BF-AAOX-01 19 7828331 7828331 C T CLEC4M Silent p.F33F 0.32 TCGA-BF-AAOX-01 19 8564178 8564178 C T PRAM1 Missense_Mutation p.E172K 0.26 tolerated(0.1) probably_damaging(0.987) TCGA-BF-AAOX-01 19 8953426 8953426 C T MBD3L1 Silent p.T24T 0.23 TCGA-BF-AAOX-01 19 9017421 9017421 C T MUC16 Missense_Mutation p.E12635K 0.30 possibly_damaging(0.761) TCGA-BF-AAOX-01 19 9045880 9045880 G A MUC16 Silent p.S11917S 0.34 TCGA-BF-AAOX-01 19 9047813 9047813 C T MUC16 Missense_Mutation p.S11273N 0.41 benign(0.032) TCGA-BF-AAOX-01 19 9057805 9057805 C T MUC16 Missense_Mutation p.E9881K 0.36 unknown(0) TCGA-BF-AAOX-01 19 9060407 9060407 G A MUC16 Silent p.I9013I 0.33 TCGA-BF-AAOX-01 19 9061307 9061307 G A MUC16 Silent p.I8713I 0.29 TCGA-BF-AAOX-01 19 9064328 9064328 G A MUC16 Silent p.F7706F 0.21 TCGA-BF-AAOX-01 19 9068130 9068130 T A MUC16 Missense_Mutation p.K6439I 0.36 unknown(0) TCGA-BF-AAOX-01 19 9068839 9068839 C T MUC16 Missense_Mutation p.D6203N 0.27 unknown(0) TCGA-BF-AAOX-01 19 9072286 9072286 G A MUC16 Silent p.L5054L 0.35 TCGA-BF-AAOX-01 19 9074501 9074501 G A MUC16 Silent p.S4315S 0.21 TCGA-BF-AAOX-01 19 9075973 9075973 G A MUC16 Missense_Mutation p.P3825S 0.37 unknown(0) TCGA-BF-AAOX-01 19 9076745 9076745 G A MUC16 Silent p.T3567T 0.31 TCGA-BF-AAOX-01 19 9076975 9076975 G A MUC16 Missense_Mutation p.P3491S 0.22 unknown(0) TCGA-BF-AAOX-01 19 9090373 9090373 C T MUC16 Missense_Mutation p.R481K 0.24 unknown(0) TCGA-BF-AAOX-01 19 9091366 9091366 G A MUC16 Missense_Mutation p.T150I 0.35 unknown(0) TCGA-BF-AAOX-01 1 103449746 103449746 C T COL11A1 Missense_Mutation p.G835E 0.28 unknown(0) TCGA-BF-AAOX-01 1 104297432 104297432 G A AMY1C Missense_Mutation p.G366E 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAOX-01 1 10527268 10527268 G A DFFA Silent p.L140L 0.29 TCGA-BF-AAOX-01 1 109276137 109276137 C T FNDC7 Missense_Mutation p.P708L 0.31 deleterious(0.04) probably_damaging(0.973) TCGA-BF-AAOX-01 1 11024217 11024217 C T C1orf127 Missense_Mutation p.E162K 0.43 tolerated(0.07) probably_damaging(0.953) TCGA-BF-AAOX-01 1 1118428 1118428 G A TTLL10 Splice_Site p.X363_splice 0.50 TCGA-BF-AAOX-01 1 11300400 11300400 G A MTOR Silent p.I582I 0.41 TCGA-BF-AAOX-01 1 113264854 113264854 G A FAM19A3 Splice_Site 0.36 TCGA-BF-AAOX-01 1 114128173 114128173 G A MAGI3 Missense_Mutation p.E240K 0.37 deleterious(0) possibly_damaging(0.668) TCGA-BF-AAOX-01 1 115161042 115161042 T C DENND2C Missense_Mutation p.H430R 0.18 tolerated(0.36) benign(0.028) TCGA-BF-AAOX-01 1 115168296 115168296 C T DENND2C Missense_Mutation p.D104N 0.19 tolerated(0.34) benign(0.002) TCGA-BF-AAOX-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.29 deleterious(0) benign(0.109) TCGA-BF-AAOX-01 1 118477229 118477229 C T WDR3 Missense_Mutation p.T102I 0.42 tolerated(0.34) benign(0.238) TCGA-BF-AAOX-01 1 119927624 119927624 G A HAO2 Missense_Mutation p.R170Q 0.34 deleterious(0.02) benign(0.018) TCGA-BF-AAOX-01 1 120342378 120342378 C T REG4 Silent p.P91P 0.36 TCGA-BF-AAOX-01 1 120497664 120497664 C T NOTCH2 Missense_Mutation p.G740R 0.17 tolerated(0.07) probably_damaging(1) TCGA-BF-AAOX-01 1 12557579 12557579 C T VPS13D Missense_Mutation p.P4230S 0.18 probably_damaging(0.986) TCGA-BF-AAOX-01 1 12557580 12557580 C T VPS13D Missense_Mutation p.P4230L 0.18 probably_damaging(0.992) TCGA-BF-AAOX-01 1 12943154 12943154 C T PRAMEF4 Missense_Mutation p.R21K 0.36 tolerated(0.13) benign(0.013) TCGA-BF-AAOX-01 1 13001233 13001233 G A PRAMEF6 Silent p.F150F 0.14 TCGA-BF-AAOX-01 1 1425718 1425718 C T ATAD3B Silent p.F473F 0.38 TCGA-BF-AAOX-01 1 142713014 142713014 C T RP11-417J8.6 RNA 0.31 TCGA-BF-AAOX-01 1 145075882 145075882 A C PDE4DIP 5'UTR 0.12 TCGA-BF-AAOX-01 1 151491581 151491581 C T CGN Missense_Mutation p.R196W 0.20 deleterious(0) probably_damaging(0.99) TCGA-BF-AAOX-01 1 151751254 151751254 C T TDRKH Missense_Mutation p.V264I 0.47 tolerated(0.33) benign(0.001) TCGA-BF-AAOX-01 1 152059370 152059370 G A TCHHL1 Missense_Mutation p.S263L 0.15 deleterious(0.02) possibly_damaging(0.654) TCGA-BF-AAOX-01 1 152279531 152279531 C T FLG Missense_Mutation p.E2611K 0.16 benign(0.214) TCGA-BF-AAOX-01 1 152324534 152324534 C T FLG2 Missense_Mutation p.E1910K 0.46 probably_damaging(0.954) TCGA-BF-AAOX-01 1 152733617 152733617 C G KPRP Missense_Mutation p.S518C 0.34 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-BF-AAOX-01 1 153065978 153065978 C T SPRR2E 3'UTR 0.47 TCGA-BF-AAOX-01 1 153084938 153084938 G A SPRR2F 3'UTR 0.21 TCGA-BF-AAOX-01 1 153177408 153177408 C T LELP1 Silent p.T75T 0.17 TCGA-BF-AAOX-01 1 153276447 153276447 C T PGLYRP3 Missense_Mutation p.G139S 0.18 tolerated(0.71) benign(0.236) TCGA-BF-AAOX-01 1 153391753 153391753 G A S100A7A Missense_Mutation p.G92R 0.24 deleterious(0.05) possibly_damaging(0.882) TCGA-BF-AAOX-01 1 153947112 153947112 G C JTB 3'UTR 0.16 TCGA-BF-AAOX-01 1 154794589 154794589 G A KCNN3 Silent p.I335I 0.23 TCGA-BF-AAOX-01 1 155006024 155006024 G A DCST2 Missense_Mutation p.P52S 0.20 deleterious(0.05) possibly_damaging(0.893) TCGA-BF-AAOX-01 1 155307960 155307960 G A ASH1L Missense_Mutation p.P2908L 0.21 deleterious_low_confidence(0.05) benign(0.246) TCGA-BF-AAOX-01 1 155307961 155307961 G A ASH1L Missense_Mutation p.P2908S 0.21 tolerated_low_confidence(0.1) benign(0.189) TCGA-BF-AAOX-01 1 1560205 1560205 G A MIB2 Silent p.P265P 0.15 TCGA-BF-AAOX-01 1 156347120 156347120 C T RHBG Silent p.F72F 0.60 TCGA-BF-AAOX-01 1 157069118 157069118 C T ETV3L Silent p.R37R 0.29 TCGA-BF-AAOX-01 1 157509152 157509152 G A FCRL5 Missense_Mutation p.P376S 0.30 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 1 158298750 158298750 A C CD1B Missense_Mutation p.L314R 0.13 deleterious(0) benign(0.429) TCGA-BF-AAOX-01 1 158390601 158390601 G A OR10K2 Missense_Mutation p.S19F 0.54 deleterious(0.01) possibly_damaging(0.474) TCGA-BF-AAOX-01 1 158436035 158436035 C T OR10K1 Silent p.I228I 0.28 TCGA-BF-AAOX-01 1 158549051 158549051 G A OR10X1 Silent p.F213F 0.41 TCGA-BF-AAOX-01 1 158576832 158576832 C T OR10Z1 Missense_Mutation p.L202F 0.28 tolerated(0.12) probably_damaging(1) TCGA-BF-AAOX-01 1 158627395 158627395 T A SPTA1 Missense_Mutation p.N893Y 0.51 deleterious(0.01) possibly_damaging(0.526) TCGA-BF-AAOX-01 1 158644451 158644451 G A SPTA1 Missense_Mutation p.S376L 0.23 tolerated(1) benign(0.002) TCGA-BF-AAOX-01 1 159166662 159166662 G A CADM3 Intron 0.20 TCGA-BF-AAOX-01 1 159409747 159409747 C T OR10J1 Missense_Mutation p.H67Y 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-BF-AAOX-01 1 160389266 160389266 G A VANGL2 Missense_Mutation p.V223M 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 1 160461052 160461052 C T SLAMF6 Missense_Mutation p.G170E 0.49 tolerated(0.16) probably_damaging(0.971) TCGA-BF-AAOX-01 1 161018662 161018662 C T ARHGAP30 Missense_Mutation p.E717K 0.45 tolerated_low_confidence(0.5) benign(0.002) TCGA-BF-AAOX-01 1 161494727 161494727 C T HSPA6 Silent p.P93P 0.44 TCGA-BF-AAOX-01 1 161993149 161993149 G C OLFML2B Silent p.V24V 0.29 TCGA-BF-AAOX-01 1 167095300 167095300 C T DUSP27 Missense_Mutation p.A311V 0.35 deleterious(0) benign(0.081) TCGA-BF-AAOX-01 1 169364423 169364423 C T CCDC181 Missense_Mutation p.M463I 0.48 tolerated(0.2) benign(0) TCGA-BF-AAOX-01 1 169697344 169697344 C T SELE Missense_Mutation p.M378I 0.52 tolerated(0.12) benign(0.034) TCGA-BF-AAOX-01 1 171085386 171085386 G A FMO3 Missense_Mutation p.D408N 0.20 deleterious(0.02) probably_damaging(0.944) TCGA-BF-AAOX-01 1 171254449 171254449 G A FMO1 Silent p.T455T 0.30 TCGA-BF-AAOX-01 1 171292310 171292310 C T FMO4 Silent p.L100L 0.42 TCGA-BF-AAOX-01 1 175049484 175049484 G A TNN Missense_Mutation p.G324R 0.28 deleterious(0) probably_damaging(0.991) TCGA-BF-AAOX-01 1 17531741 17531741 C T PADI1 Missense_Mutation p.S10F 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 1 175348728 175348728 G A TNR Silent p.V641V 0.19 TCGA-BF-AAOX-01 1 176525476 176525476 C T PAPPA2 Silent p.I6I 0.31 TCGA-BF-AAOX-01 1 177226268 177226268 G A BRINP2 Intron 0.25 TCGA-BF-AAOX-01 1 177927309 177927309 G A SEC16B Silent p.I441I 0.28 TCGA-BF-AAOX-01 1 178427624 178427624 C T RASAL2 Missense_Mutation p.S1066F 0.22 deleterious(0) possibly_damaging(0.865) TCGA-BF-AAOX-01 1 178489855 178489855 G A TEX35 Missense_Mutation p.G130E 0.48 tolerated(0.11) probably_damaging(0.998) TCGA-BF-AAOX-01 1 178491567 178491567 G A TEX35 Missense_Mutation p.G232R 0.57 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-BF-AAOX-01 1 181701904 181701904 G A CACNA1E Silent p.P894P 0.37 TCGA-BF-AAOX-01 1 181708300 181708300 G A CACNA1E Silent p.L1210L 0.16 TCGA-BF-AAOX-01 1 182027180 182027180 G A ZNF648 5'UTR 0.48 TCGA-BF-AAOX-01 1 182787719 182787719 C T NPL Silent p.P167P 0.36 TCGA-BF-AAOX-01 1 183101638 183101638 C T LAMC1 Nonsense_Mutation p.Q1224* 0.40 TCGA-BF-AAOX-01 1 186089195 186089195 C T HMCN1 Silent p.V4049V 0.22 TCGA-BF-AAOX-01 1 186862165 186862165 G A PLA2G4A Silent p.V46V 0.53 TCGA-BF-AAOX-01 1 186862209 186862209 G A PLA2G4A Missense_Mutation p.R61K 0.26 tolerated(0.57) benign(0.002) TCGA-BF-AAOX-01 1 196197355 196197355 C T KCNT2 Silent p.%3D 0.18 TCGA-BF-AAOX-01 1 196395094 196395094 G A KCNT2 Missense_Mutation p.P337S 0.51 tolerated(0.12) probably_damaging(0.993) TCGA-BF-AAOX-01 1 196577421 196577421 C T KCNT2 Missense_Mutation p.E7K 0.51 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-BF-AAOX-01 1 196716357 196716357 G A CFH Missense_Mutation p.G1204R 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-BF-AAOX-01 1 196759252 196759252 C T CFHR3 Missense_Mutation p.P231S 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-BF-AAOX-01 1 196879440 196879440 C T CFHR4 Nonsense_Mutation p.Q276* 0.67 TCGA-BF-AAOX-01 1 198671560 198671560 C T PTPRC Missense_Mutation p.P162S 0.28 tolerated(0.55) benign(0.001) TCGA-BF-AAOX-01 1 198713264 198713264 C T PTPRC Missense_Mutation p.P927S 0.51 tolerated(1) benign(0.004) TCGA-BF-AAOX-01 1 200143416 200143416 A T NR5A2 3'UTR 0.34 TCGA-BF-AAOX-01 1 200842991 200842991 C T GPR25 Missense_Mutation p.P276S 0.26 tolerated(0.17) possibly_damaging(0.559) TCGA-BF-AAOX-01 1 200969037 200969037 C T KIF21B Missense_Mutation p.E581K 0.45 tolerated(0.08) probably_damaging(0.952) TCGA-BF-AAOX-01 1 201060897 201060897 T A CACNA1S Missense_Mutation p.I189F 0.21 deleterious(0) possibly_damaging(0.695) TCGA-BF-AAOX-01 1 201183324 201183324 C T IGFN1 Silent p.S2916S 0.52 TCGA-BF-AAOX-01 1 201938668 201938668 C T TIMM17A Nonsense_Mutation p.R168* 0.50 TCGA-BF-AAOX-01 1 202715042 202715042 T C KDM5B Missense_Mutation p.N756S 0.48 deleterious(0.02) benign(0.403) TCGA-BF-AAOX-01 1 203134844 203134844 C T ADORA1 Missense_Mutation p.P266L 0.43 deleterious(0.03) benign(0.433) TCGA-BF-AAOX-01 1 203192370 203192370 G A CHIT1 Silent p.F166F 0.21 TCGA-BF-AAOX-01 1 205886423 205886423 C T SLC26A9 Nonsense_Mutation p.W772* 0.20 TCGA-BF-AAOX-01 1 206778855 206778855 G A EIF2D Missense_Mutation p.P143L 0.46 deleterious(0) probably_damaging(0.974) TCGA-BF-AAOX-01 1 207112469 207112469 C T PIGR Missense_Mutation p.S128N 0.49 tolerated(0.25) benign(0.048) TCGA-BF-AAOX-01 1 207934770 207934770 C T CD46 Missense_Mutation p.R218C 0.26 deleterious(0) benign(0.051) TCGA-BF-AAOX-01 1 213414167 213414167 C T RPS6KC1 Missense_Mutation p.P450S 0.54 deleterious(0.03) benign(0.029) TCGA-BF-AAOX-01 1 216595573 216595573 G A USH2A Missense_Mutation p.L36F 0.44 possibly_damaging(0.635) TCGA-BF-AAOX-01 1 216692687 216692687 G A ESRRG Silent p.V325V 0.23 TCGA-BF-AAOX-01 1 221057799 221057799 T A HLX Missense_Mutation p.I407N 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.55) TCGA-BF-AAOX-01 1 223402569 223402569 G A SUSD4 Missense_Mutation p.P296S 0.49 tolerated(0.2) probably_damaging(0.974) TCGA-BF-AAOX-01 1 223465892 223465892 G A SUSD4 Missense_Mutation p.H84Y 0.46 tolerated(0.17) possibly_damaging(0.545) TCGA-BF-AAOX-01 1 227333422 227333422 G A CDC42BPA Missense_Mutation p.P304L 0.38 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 1 2283252 2283252 C T MORN1 Intron 0.23 TCGA-BF-AAOX-01 1 228473992 228473992 C T OBSCN Missense_Mutation p.S3502L 0.45 possibly_damaging(0.889) TCGA-BF-AAOX-01 1 228492979 228492979 G A OBSCN Missense_Mutation p.D4808N 0.27 probably_damaging(0.968) TCGA-BF-AAOX-01 1 228582832 228582832 G A TRIM11 Silent p.P327P 0.29 TCGA-BF-AAOX-01 1 228612851 228612851 G A HIST3H3 Missense_Mutation p.T59I 0.21 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-BF-AAOX-01 1 233394720 233394720 C T PCNXL2 Silent p.R296R 0.24 TCGA-BF-AAOX-01 1 233807367 233807367 G A KCNK1 3'UTR 0.55 TCGA-BF-AAOX-01 1 234455885 234455885 C T SLC35F3 Missense_Mutation p.P397S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAOX-01 1 236154303 236154303 C T NID1 Silent p.V937V 0.49 TCGA-BF-AAOX-01 1 236645913 236645913 C A EDARADD Silent p.P204P 0.34 TCGA-BF-AAOX-01 1 240370340 240370340 C T FMN2 Missense_Mutation p.S743L 0.45 unknown(0) TCGA-BF-AAOX-01 1 240371023 240371023 C T FMN2 Missense_Mutation p.P971S 0.44 unknown(0) TCGA-BF-AAOX-01 1 24181002 24181002 G A FUCA1 Missense_Mutation p.H273Y 0.32 deleterious(0) probably_damaging(0.923) TCGA-BF-AAOX-01 1 24201135 24201135 C T CNR2 Missense_Mutation p.G325R 0.28 tolerated(0.16) benign(0.015) TCGA-BF-AAOX-01 1 243303420 243303420 G A CEP170 Intron 0.24 TCGA-BF-AAOX-01 1 243801011 243801011 C T AKT3 Missense_Mutation p.G155S 0.32 deleterious(0.02) possibly_damaging(0.711) TCGA-BF-AAOX-01 1 245849892 245849892 G A KIF26B Missense_Mutation p.D1203N 0.45 deleterious(0.02) unknown(0) TCGA-BF-AAOX-01 1 247588269 247588269 C T NLRP3 Silent p.F508F 0.39 TCGA-BF-AAOX-01 1 247737781 247737781 C T GCSAML 3'UTR 0.41 TCGA-BF-AAOX-01 1 248059312 248059312 C T OR2W3 Missense_Mutation p.R142W 0.62 tolerated(0.29) benign(0.002) TCGA-BF-AAOX-01 1 248262767 248262767 C T OR2L13 Silent p.I30I 0.11 TCGA-BF-AAOX-01 1 248263604 248263604 C T OR2L13 Silent p.F309F 0.36 TCGA-BF-AAOX-01 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.56 deleterious(0) possibly_damaging(0.815) TCGA-BF-AAOX-01 1 24978026 24978026 G A SRRM1 Silent p.K216K 0.20 TCGA-BF-AAOX-01 1 2529730 2529730 C T MMEL1 Silent p.Q396Q 0.45 TCGA-BF-AAOX-01 1 26786551 26786551 C T DHDDS Silent p.F227F 0.30 TCGA-BF-AAOX-01 1 27874360 27874360 C G AHDC1 Missense_Mutation p.E1423Q 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.742) TCGA-BF-AAOX-01 1 29533322 29533322 G A MECR Missense_Mutation p.P168S 0.43 deleterious(0) probably_damaging(0.983) TCGA-BF-AAOX-01 1 29606647 29606647 C T PTPRU Missense_Mutation p.P621L 0.32 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 1 29644387 29644387 C T PTPRU Missense_Mutation p.S1224F 0.31 deleterious(0) possibly_damaging(0.701) TCGA-BF-AAOX-01 1 33065861 33065861 C T ZBTB8A Silent p.S389S 0.26 TCGA-BF-AAOX-01 1 34204844 34204844 G A CSMD2 Silent p.F715F 0.28 TCGA-BF-AAOX-01 1 34238348 34238348 G A CSMD2 Silent p.I516I 0.41 TCGA-BF-AAOX-01 1 34677913 34677924 CCTCAGAGGACA - C1orf94 In_Frame_Del p.Q544_P547del 0.35 TCGA-BF-AAOX-01 1 35227318 35227318 G A GJB4 Missense_Mutation p.D155N 0.28 tolerated(0.21) benign(0.002) TCGA-BF-AAOX-01 1 35365775 35365775 C T DLGAP3 Missense_Mutation p.D403N 0.29 deleterious(0.01) benign(0.134) TCGA-BF-AAOX-01 1 35365776 35365776 C T DLGAP3 Silent p.G402G 0.28 TCGA-BF-AAOX-01 1 36809859 36809859 G A STK40 Missense_Mutation p.P249L 0.32 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOX-01 1 36809860 36809860 G A STK40 Missense_Mutation p.P249S 0.32 deleterious(0) possibly_damaging(0.859) TCGA-BF-AAOX-01 1 36939051 36939051 C T CSF3R Missense_Mutation p.D220N 0.31 tolerated(0.15) benign(0.008) TCGA-BF-AAOX-01 1 38226969 38226969 C T EPHA10 Intron 0.25 TCGA-BF-AAOX-01 1 39801603 39801603 C T MACF1 Intron 0.34 TCGA-BF-AAOX-01 1 40702723 40702723 T G RLF Missense_Mutation p.S783R 0.34 deleterious(0) probably_damaging(0.972) TCGA-BF-AAOX-01 1 43907411 43907411 C T SZT2 Missense_Mutation p.P2498L 0.30 deleterious(0) probably_damaging(0.948) TCGA-BF-AAOX-01 1 44595025 44595025 G A KLF17 Missense_Mutation p.D28N 0.30 deleterious(0.01) possibly_damaging(0.82) TCGA-BF-AAOX-01 1 44684384 44684384 G A DMAP1 Missense_Mutation p.R226Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 1 45120227 45120227 G A TMEM53 3'UTR 0.38 TCGA-BF-AAOX-01 1 45271725 45271725 T C TCTEX1D4 Missense_Mutation p.N206D 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAOX-01 1 47498919 47498919 G A CYP4X1 Missense_Mutation p.G124E 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 1 48697282 48697282 G A SLC5A9 Missense_Mutation p.V251I 0.19 tolerated(1) benign(0.084) TCGA-BF-AAOX-01 1 55088984 55088984 C T FAM151A Missense_Mutation p.A29T 0.40 tolerated(0.75) benign(0) TCGA-BF-AAOX-01 1 55451936 55451936 G A TMEM61 Missense_Mutation p.G61D 0.43 deleterious(0.01) benign(0.31) TCGA-BF-AAOX-01 1 57480564 57480564 G A DAB1 Missense_Mutation p.T479I 0.23 tolerated(0.2) possibly_damaging(0.784) TCGA-BF-AAOX-01 1 60301043 60301043 G A HOOK1 Missense_Mutation p.E145K 0.27 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOX-01 1 60521014 60521014 G A C1orf87 Silent p.P68P 0.38 TCGA-BF-AAOX-01 1 62293244 62293244 C T INADL Missense_Mutation p.P657S 0.25 tolerated(0.21) benign(0.009) TCGA-BF-AAOX-01 1 62374108 62374108 G A INADL Missense_Mutation p.G1149E 0.28 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 1 65316583 65316583 G A JAK1 Silent p.N553N 0.32 TCGA-BF-AAOX-01 1 6592106 6592106 G A NOL9 Silent p.S523S 0.38 TCGA-BF-AAOX-01 1 66064391 66064391 C T LEPR Missense_Mutation p.P300S 0.33 deleterious(0.04) possibly_damaging(0.688) TCGA-BF-AAOX-01 1 68948517 68948517 G A DEPDC1 Missense_Mutation p.P325L 0.32 tolerated(0.1) benign(0.05) TCGA-BF-AAOX-01 1 71437334 71437334 T A PTGER3 Intron 0.33 TCGA-BF-AAOX-01 1 72058600 72058600 G A NEGR1 Silent p.S280S 0.39 TCGA-BF-AAOX-01 1 7805950 7805950 G A CAMTA1 Silent p.L1472L 0.27 TCGA-BF-AAOX-01 1 82408841 82408841 C T LPHN2 Missense_Mutation p.R196C 0.48 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 1 82421651 82421651 A G LPHN2 Missense_Mutation p.T625A 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-BF-AAOX-01 1 82432134 82432134 C T LPHN2 Silent p.F713F 0.35 TCGA-BF-AAOX-01 1 8385415 8385415 G A SLC45A1 Missense_Mutation p.G152E 0.24 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 1 85127924 85127924 T C SSX2IP Missense_Mutation p.Q295R 0.36 tolerated(0.33) benign(0.074) TCGA-BF-AAOX-01 1 85538755 85538755 C T WDR63 Missense_Mutation p.P28L 0.25 deleterious(0.01) benign(0.169) TCGA-BF-AAOX-01 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.39 TCGA-BF-AAOX-01 1 89582870 89582870 G A GBP2 Nonsense_Mutation p.R225* 0.28 TCGA-BF-AAOX-01 1 91846506 91846506 G A HFM1 Missense_Mutation p.P279L 0.27 deleterious(0.03) benign(0.126) TCGA-BF-AAOX-01 1 92568073 92568073 G A BTBD8 Missense_Mutation p.E131K 0.28 tolerated(0.17) benign(0.437) TCGA-BF-AAOX-01 1 94485276 94485276 C T ABCA4 Silent p.V1686V 0.15 TCGA-BF-AAOX-01 1 94528309 94528309 C T ABCA4 Silent p.R587R 0.61 TCGA-BF-AAOX-01 1 97547952 97547952 C T DPYD Missense_Mutation p.M947I 0.29 tolerated(0.13) benign(0) TCGA-BF-AAOX-01 20 10625808 10625808 C T JAG1 Missense_Mutation p.G737E 0.51 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 20 2320578 2320578 G A TGM3 Missense_Mutation p.D627N 0.33 tolerated(0.22) benign(0.004) TCGA-BF-AAOX-01 20 23805934 23805934 G A CST2 Silent p.F85F 0.52 TCGA-BF-AAOX-01 20 30674595 30674595 G A HCK Missense_Mutation p.E334K 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-BF-AAOX-01 20 30897894 30897894 C T KIF3B Missense_Mutation p.T105I 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 20 31887772 31887772 C T BPIFB1 Silent p.T243T 0.48 TCGA-BF-AAOX-01 20 31967359 31967359 G A CDK5RAP1 Missense_Mutation p.R339C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 20 32328705 32328705 C T ZNF341 Intron 0.45 TCGA-BF-AAOX-01 20 33588849 33588849 G A MYH7B Missense_Mutation p.R1830Q 0.40 possibly_damaging(0.496) TCGA-BF-AAOX-01 20 33703595 33703595 G A EDEM2 Missense_Mutation p.P460S 0.40 tolerated(0.13) benign(0.098) TCGA-BF-AAOX-01 20 33862340 33862340 C T MMP24 Silent p.I622I 0.22 TCGA-BF-AAOX-01 20 34611541 34611541 C T CNBD2 Silent p.F425F 0.34 TCGA-BF-AAOX-01 20 34802331 34802331 C T EPB41L1 Missense_Mutation p.S746F 0.24 tolerated(0.05) benign(0.038) TCGA-BF-AAOX-01 20 34827889 34827889 G A AAR2 Silent p.G33G 0.44 TCGA-BF-AAOX-01 20 35517727 35517727 G A TLDC2 Missense_Mutation p.E196K 0.45 tolerated(0.09) possibly_damaging(0.881) TCGA-BF-AAOX-01 20 40033909 40033909 G A CHD6 Missense_Mutation p.P2491L 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-BF-AAOX-01 20 40944527 40944527 C T PTPRT Missense_Mutation p.D659N 0.35 tolerated(0.57) benign(0.002) TCGA-BF-AAOX-01 20 41514498 41514498 C T PTPRT Missense_Mutation p.E55K 0.42 deleterious(0.02) probably_damaging(0.981) TCGA-BF-AAOX-01 20 43034740 43034740 G A HNF4A Missense_Mutation p.S53N 0.45 tolerated(0.77) benign(0.05) TCGA-BF-AAOX-01 20 43926813 43926813 C T MATN4 Missense_Mutation p.E475K 0.35 benign(0.096) TCGA-BF-AAOX-01 20 44279156 44279156 C T WFDC11 Silent p.R28R 0.31 TCGA-BF-AAOX-01 20 44441972 44441972 A G UBE2C Intron 0.24 TCGA-BF-AAOX-01 20 49576049 49576049 C T MOCS3 Missense_Mutation p.R224C 0.32 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 20 50408388 50408388 G A SALL4 Missense_Mutation p.P212S 0.34 deleterious(0.02) possibly_damaging(0.804) TCGA-BF-AAOX-01 20 50769958 50769958 G A ZFP64 Missense_Mutation p.P258L 0.33 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 20 54824094 54824094 G A MC3R Silent p.R65R 0.39 TCGA-BF-AAOX-01 20 57829283 57829283 G A ZNF831 Missense_Mutation p.E1507K 0.32 tolerated(0.58) benign(0.05) TCGA-BF-AAOX-01 20 58560178 58560178 G A CDH26 Silent p.Q277Q 0.47 TCGA-BF-AAOX-01 20 58587851 58587851 C T CDH26 3'UTR 0.67 TCGA-BF-AAOX-01 20 5903820 5903820 G A CHGB Missense_Mutation p.E344K 0.37 deleterious(0.01) benign(0.403) TCGA-BF-AAOX-01 20 60791908 60791908 G A HRH3 Silent p.F164F 0.33 TCGA-BF-AAOX-01 20 60885301 60885301 C T LAMA5 Missense_Mutation p.G3556E 0.36 benign(0.059) TCGA-BF-AAOX-01 20 61981626 61981626 G A CHRNA4 Silent p.A379A 0.38 TCGA-BF-AAOX-01 20 62378469 62378469 G A ZBTB46 Silent p.F528F 0.10 TCGA-BF-AAOX-01 20 9538350 9538350 G A PAK7 Silent p.L550L 0.51 TCGA-BF-AAOX-01 21 11098812 11098812 C T BAGE2 RNA 0.12 TCGA-BF-AAOX-01 21 34123435 34123435 G A PAXBP1 Silent p.A534A 0.42 TCGA-BF-AAOX-01 21 34123436 34123436 G A PAXBP1 Missense_Mutation p.A534V 0.41 tolerated(0.14) probably_damaging(0.981) TCGA-BF-AAOX-01 21 37785354 37785354 G A CHAF1B Missense_Mutation p.G412R 0.25 tolerated(0.22) benign(0.288) TCGA-BF-AAOX-01 21 37785355 37785355 G A CHAF1B Missense_Mutation p.G412E 0.25 tolerated(0.39) benign(0.027) TCGA-BF-AAOX-01 21 39672242 39672242 G A KCNJ15 Silent p.E353E 0.38 TCGA-BF-AAOX-01 21 39817338 39817338 C - ERG Frame_Shift_Del p.N83Mfs*27 0.18 TCGA-BF-AAOX-01 21 42843909 42843909 C T TMPRSS2 Splice_Site p.X337_splice 0.09 TCGA-BF-AAOX-01 21 42866378 42866378 G A TMPRSS2 Missense_Mutation p.P85L 0.30 tolerated(0.18) benign(0.132) TCGA-BF-AAOX-01 21 44270102 44270102 G A WDR4 3'UTR 0.27 TCGA-BF-AAOX-01 21 46032848 46032848 G A KRTAP10-8 3'UTR 0.29 TCGA-BF-AAOX-01 21 47549150 47549150 C T COL6A2 Intron 0.34 TCGA-BF-AAOX-01 22 16269873 16269873 C T POTEH Silent p.E436E 0.14 TCGA-BF-AAOX-01 22 17445658 17445658 G A GAB4 Missense_Mutation p.P492S 0.18 tolerated(0.13) benign(0.003) TCGA-BF-AAOX-01 22 17445659 17445659 G A GAB4 Silent p.F491F 0.21 TCGA-BF-AAOX-01 22 18844786 18844786 G A BCRP7 Intron 0.16 TCGA-BF-AAOX-01 22 20073974 20073974 C T DGCR8 Missense_Mutation p.P163L 0.32 deleterious_low_confidence(0.03) benign(0.071) TCGA-BF-AAOX-01 22 23237574 23237574 C T IGLL5 Silent p.P115P 0.23 TCGA-BF-AAOX-01 22 23237979 23237979 G A IGLL5 3'UTR 0.35 TCGA-BF-AAOX-01 22 25270418 25270418 C T SGSM1 Missense_Mutation p.S443F 0.40 deleterious(0.04) benign(0.066) TCGA-BF-AAOX-01 22 26219624 26219624 G A MYO18B Missense_Mutation p.E892K 0.50 tolerated(0.33) benign(0.031) TCGA-BF-AAOX-01 22 26747069 26747069 C T SEZ6L Missense_Mutation p.S820L 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-BF-AAOX-01 22 30765424 30765424 C T CCDC157 Silent p.L84L 0.17 TCGA-BF-AAOX-01 22 30899720 30899720 T A SEC14L4 Missense_Mutation p.D25V 0.55 deleterious(0) probably_damaging(0.962) TCGA-BF-AAOX-01 22 31597547 31597547 C T RNF185 Missense_Mutation p.P143S 0.56 deleterious(0.01) probably_damaging(0.928) TCGA-BF-AAOX-01 22 32828490 32828490 C T BPIFC Missense_Mutation p.R340K 0.25 tolerated(0.97) benign(0.422) TCGA-BF-AAOX-01 22 36653382 36653382 C T APOL1 Missense_Mutation p.P55L 0.40 deleterious(0) probably_damaging(0.988) TCGA-BF-AAOX-01 22 37325841 37325841 C A CSF2RB Missense_Mutation p.S237Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 22 37462141 37462141 C T TMPRSS6 Nonsense_Mutation p.W805* 0.12 TCGA-BF-AAOX-01 22 37866030 37866030 G A MFNG Missense_Mutation p.P313S 0.33 tolerated(0.57) benign(0.025) TCGA-BF-AAOX-01 22 38061797 38061797 C A PDXP Nonsense_Mutation p.Y270* 0.20 TCGA-BF-AAOX-01 22 38209602 38209602 C T GCAT Silent p.L214L 0.15 TCGA-BF-AAOX-01 22 39077955 39077955 C T TOMM22 5'UTR 0.17 TCGA-BF-AAOX-01 22 39440204 39440204 G A APOBEC3F Intron 0.19 TCGA-BF-AAOX-01 22 42912120 42912120 G A RRP7A Missense_Mutation p.S80F 0.23 deleterious(0.01) benign(0.333) TCGA-BF-AAOX-01 22 43831135 43831135 G A MPPED1 Missense_Mutation p.G136S 0.67 deleterious(0.04) possibly_damaging(0.48) TCGA-BF-AAOX-01 22 44287160 44287160 G A PNPLA5 Missense_Mutation p.H70Y 0.24 tolerated(0.56) benign(0.329) TCGA-BF-AAOX-01 22 44332976 44332976 G A PNPLA3 Missense_Mutation p.G268E 0.18 tolerated(1) benign(0.001) TCGA-BF-AAOX-01 22 44892571 44892571 G A LDOC1L 3'UTR 0.23 TCGA-BF-AAOX-01 22 45255694 45255694 C T PRR5-ARHGAP8 Missense_Mutation p.L531F 0.29 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BF-AAOX-01 22 45279030 45279030 G A PHF21B Missense_Mutation p.P511L 0.21 deleterious_low_confidence(0) benign(0.424) TCGA-BF-AAOX-01 22 45279031 45279031 G A PHF21B Missense_Mutation p.P511S 0.21 tolerated_low_confidence(0.17) benign(0.242) TCGA-BF-AAOX-01 22 46319054 46319054 G A WNT7B Silent p.S244S 0.11 TCGA-BF-AAOX-01 22 46806377 46806377 G A CELSR1 Silent p.F1617F 0.43 TCGA-BF-AAOX-01 22 51160788 51160788 T C SHANK3 Silent p.R1525R 0.18 TCGA-BF-AAOX-01 2 10136463 10136463 G A GRHL1 Silent p.K537K 0.28 TCGA-BF-AAOX-01 2 102781390 102781390 G A IL1R1 Missense_Mutation p.R73K 0.40 deleterious(0) possibly_damaging(0.781) TCGA-BF-AAOX-01 2 102789206 102789206 A C IL1R1 Missense_Mutation p.E300A 0.37 tolerated(0.13) benign(0.009) TCGA-BF-AAOX-01 2 103039647 103039647 G A IL18RAP 5'UTR 0.53 TCGA-BF-AAOX-01 2 103053812 103053812 G A IL18RAP Silent p.V240V 0.33 TCGA-BF-AAOX-01 2 103095736 103095736 C T SLC9A4 Missense_Mutation p.A232V 0.32 tolerated(0.09) benign(0.088) TCGA-BF-AAOX-01 2 103128681 103128681 C T SLC9A4 Missense_Mutation p.A503V 0.13 tolerated(0.06) probably_damaging(0.917) TCGA-BF-AAOX-01 2 103128689 103128689 G A SLC9A4 Missense_Mutation p.E506K 0.15 deleterious(0.02) probably_damaging(0.922) TCGA-BF-AAOX-01 2 108478056 108478056 C T RGPD4 Missense_Mutation p.H689Y 0.28 deleterious(0.02) benign(0.403) TCGA-BF-AAOX-01 2 108478089 108478089 C T RGPD4 Missense_Mutation p.L700F 0.28 deleterious(0.04) possibly_damaging(0.86) TCGA-BF-AAOX-01 2 108488309 108488309 C T RGPD4 Silent p.F1283F 0.31 TCGA-BF-AAOX-01 2 108622514 108622514 G A SLC5A7 Missense_Mutation p.G251R 0.53 deleterious(0) probably_damaging(0.967) TCGA-BF-AAOX-01 2 110049099 110049099 C T SH3RF3 Missense_Mutation p.P516S 0.33 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 2 113737658 113737658 G A IL36G Missense_Mutation p.G78E 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-BF-AAOX-01 2 113953336 113953336 C T PSD4 Silent p.L738L 0.33 TCGA-BF-AAOX-01 2 11798635 11798635 G A NTSR2 Silent p.G401G 0.33 TCGA-BF-AAOX-01 2 121746632 121746632 G A GLI2 Missense_Mutation p.G1048R 0.52 tolerated(0.05) possibly_damaging(0.784) TCGA-BF-AAOX-01 2 121747884 121747884 G T GLI2 Missense_Mutation p.S1465I 0.31 tolerated(0.07) benign(0.085) TCGA-BF-AAOX-01 2 127819755 127819755 C T BIN1 Missense_Mutation p.D265N 0.28 tolerated(0.16) possibly_damaging(0.859) TCGA-BF-AAOX-01 2 128409260 128409260 C T GPR17 Silent p.L345L 0.26 TCGA-BF-AAOX-01 2 130785907 130785907 G A FAR2P1 RNA 0.24 TCGA-BF-AAOX-01 2 131102216 131102216 C T IMP4 Missense_Mutation p.P43S 0.21 tolerated(0.09) possibly_damaging(0.632) TCGA-BF-AAOX-01 2 133174570 133174570 G A GPR39 5'UTR 0.49 TCGA-BF-AAOX-01 2 133542671 133542671 G A NCKAP5 Silent p.G571G 0.36 TCGA-BF-AAOX-01 2 136575285 136575285 C T LCT Missense_Mutation p.G445S 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-BF-AAOX-01 2 141072670 141072670 T G LRP1B Splice_Site p.X4214_splice 0.28 TCGA-BF-AAOX-01 2 141283899 141283899 C T LRP1B Missense_Mutation p.E2595K 0.34 possibly_damaging(0.621) TCGA-BF-AAOX-01 2 141607884 141607884 G A LRP1B Missense_Mutation p.L1576F 0.26 possibly_damaging(0.587) TCGA-BF-AAOX-01 2 141709505 141709505 G A LRP1B Silent p.F964F 0.28 TCGA-BF-AAOX-01 2 141777534 141777534 C T LRP1B Missense_Mutation p.E643K 0.29 possibly_damaging(0.621) TCGA-BF-AAOX-01 2 149226276 149226276 C T MBD5 Missense_Mutation p.P255L 0.31 deleterious(0) possibly_damaging(0.851) TCGA-BF-AAOX-01 2 152467070 152467070 G A NEB Missense_Mutation p.S3993F 0.34 probably_damaging(0.92) TCGA-BF-AAOX-01 2 15307220 15307220 G A NBAS Silent p.A2356A 0.34 TCGA-BF-AAOX-01 2 158165137 158165137 C T GALNT5 Missense_Mutation p.A860V 0.26 tolerated(0.07) benign(0.422) TCGA-BF-AAOX-01 2 159077136 159077136 G A CCDC148 Silent p.I447I 0.23 TCGA-BF-AAOX-01 2 161056576 161056576 C T ITGB6 5'UTR 0.27 TCGA-BF-AAOX-01 2 163163282 163163282 C T IFIH1 Missense_Mutation p.E236K 0.25 tolerated(0.15) benign(0.001) TCGA-BF-AAOX-01 2 163163283 163163283 C T IFIH1 Silent p.K235K 0.25 TCGA-BF-AAOX-01 2 165551433 165551433 C T COBLL1 Silent p.L861L 0.29 TCGA-BF-AAOX-01 2 167159713 167159713 C T SCN9A Missense_Mutation p.G263E 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 2 167159714 167159714 C T SCN9A Missense_Mutation p.G263R 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 2 167262497 167262497 G A SCN7A Missense_Mutation p.P1548S 0.35 deleterious(0) probably_damaging(0.988) TCGA-BF-AAOX-01 2 167262568 167262568 C T SCN7A Missense_Mutation p.R1524K 0.38 tolerated(1) benign(0.077) TCGA-BF-AAOX-01 2 167288866 167288866 C T SCN7A Missense_Mutation p.E852K 0.11 deleterious(0.03) benign(0.269) TCGA-BF-AAOX-01 2 167760231 167760231 C T XIRP2 Missense_Mutation p.S80F 0.37 benign(0.111) TCGA-BF-AAOX-01 2 168099694 168099694 G A XIRP2 Missense_Mutation p.D598N 0.28 benign(0.003) TCGA-BF-AAOX-01 2 170101392 170101392 G A LRP2 Missense_Mutation p.P1081S 0.33 probably_damaging(0.983) TCGA-BF-AAOX-01 2 170344594 170344594 G T BBS5 Missense_Mutation p.R119I 0.34 deleterious(0) probably_damaging(0.985) TCGA-BF-AAOX-01 2 171573839 171573839 C T SP5 Silent p.H374H 0.42 TCGA-BF-AAOX-01 2 173848228 173848228 G A RAPGEF4 Missense_Mutation p.G337S 0.28 tolerated(0.66) benign(0.164) TCGA-BF-AAOX-01 2 175213395 175213395 G A CIR1 Missense_Mutation p.P395S 0.34 tolerated_low_confidence(0.12) possibly_damaging(0.791) TCGA-BF-AAOX-01 2 179406163 179406163 G A TTN Silent p.V32547V 0.32 TCGA-BF-AAOX-01 2 179416365 179416365 G A TTN Missense_Mutation p.S30421F 0.39 TCGA-BF-AAOX-01 2 179422075 179422075 C T TTN Missense_Mutation p.G29305E 0.37 TCGA-BF-AAOX-01 2 179424053 179424053 C T TTN Missense_Mutation p.G28936R 0.32 TCGA-BF-AAOX-01 2 179429054 179429054 C T TTN Missense_Mutation p.E27269K 0.34 TCGA-BF-AAOX-01 2 179438979 179438979 G A TTN Silent p.I23960I 0.20 TCGA-BF-AAOX-01 2 179440422 179440422 C T TTN Silent p.R23479R 0.32 TCGA-BF-AAOX-01 2 179440832 179440832 C T TTN Missense_Mutation p.D23343N 0.41 TCGA-BF-AAOX-01 2 179443997 179443997 C T TTN Missense_Mutation p.G22587E 0.32 TCGA-BF-AAOX-01 2 179443998 179443998 C T TTN Missense_Mutation p.G22587R 0.32 TCGA-BF-AAOX-01 2 179455298 179455298 C T TTN Missense_Mutation p.R20385K 0.37 TCGA-BF-AAOX-01 2 179457234 179457234 A G TTN Missense_Mutation p.I19833T 0.36 TCGA-BF-AAOX-01 2 179464034 179464034 C T TTN Missense_Mutation p.R18829K 0.35 TCGA-BF-AAOX-01 2 179469634 179469634 G A TTN Intron 0.27 TCGA-BF-AAOX-01 2 179478655 179478655 C T TTN Missense_Mutation p.G16452D 0.38 TCGA-BF-AAOX-01 2 179478656 179478656 C T TTN Missense_Mutation p.G16452S 0.38 TCGA-BF-AAOX-01 2 179535837 179535837 C T TTN Missense_Mutation p.R11763Q 0.38 TCGA-BF-AAOX-01 2 179569280 179569280 C T TTN Silent p.L9973L 0.29 TCGA-BF-AAOX-01 2 179585148 179585148 C T TTN Missense_Mutation p.G7781R 0.29 TCGA-BF-AAOX-01 2 179596574 179596574 G A TTN Silent p.I5676I 0.36 TCGA-BF-AAOX-01 2 179600709 179600709 G A TTN Missense_Mutation p.P4822S 0.21 TCGA-BF-AAOX-01 2 179605031 179605031 G A TTN Missense_Mutation p.P4310L 0.29 TCGA-BF-AAOX-01 2 179611923 179611923 C T TTN Intron 0.33 TCGA-BF-AAOX-01 2 179613768 179613768 C T TTN Intron 0.36 TCGA-BF-AAOX-01 2 179616767 179616767 C T TTN Intron 0.38 TCGA-BF-AAOX-01 2 179628969 179628969 G A TTN Missense_Mutation p.P3350L 0.31 TCGA-BF-AAOX-01 2 179633436 179633436 C T TTN Missense_Mutation p.G3043R 0.35 TCGA-BF-AAOX-01 2 179640403 179640403 G A TTN Missense_Mutation p.T2063I 0.35 TCGA-BF-AAOX-01 2 182343483 182343483 G A ITGA4 Splice_Site p.X186_splice 0.26 TCGA-BF-AAOX-01 2 182347248 182347248 C T ITGA4 Missense_Mutation p.S304L 0.27 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 2 185803389 185803389 C T ZNF804A Missense_Mutation p.S1089F 0.38 deleterious(0) benign(0.143) TCGA-BF-AAOX-01 2 1891375 1891375 C T MYT1L Missense_Mutation p.D841N 0.33 deleterious(0.04) benign(0.343) TCGA-BF-AAOX-01 2 196799451 196799451 A G DNAH7 Missense_Mutation p.L1112S 0.40 deleterious(0.01) probably_damaging(0.918) TCGA-BF-AAOX-01 2 198948820 198948820 C T PLCL1 Silent p.L193L 0.33 TCGA-BF-AAOX-01 2 204735422 204735422 C T CTLA4 Missense_Mutation p.R75W 0.23 deleterious(0) probably_damaging(0.995) TCGA-BF-AAOX-01 2 207175872 207175872 C T ZDBF2 Missense_Mutation p.A2207V 0.25 tolerated(0.2) possibly_damaging(0.483) TCGA-BF-AAOX-01 2 209309528 209309528 G A PTH2R Missense_Mutation p.E257K 0.34 deleterious(0.03) probably_damaging(0.969) TCGA-BF-AAOX-01 2 21228939 21228939 G A APOB Nonsense_Mutation p.Q3601* 0.32 TCGA-BF-AAOX-01 2 21232261 21232261 G A APOB Silent p.I2493I 0.30 TCGA-BF-AAOX-01 2 21237400 21237400 G A APOB Silent p.H1254H 0.36 TCGA-BF-AAOX-01 2 212488718 212488718 G A ERBB4 Missense_Mutation p.R711C 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-BF-AAOX-01 2 21260953 21260953 C T APOB Silent p.G138G 0.18 TCGA-BF-AAOX-01 2 213872354 213872354 C T IKZF2 Missense_Mutation p.M437I 0.28 tolerated(0.48) benign(0) TCGA-BF-AAOX-01 2 213921777 213921777 C T IKZF2 Silent p.R62R 0.31 TCGA-BF-AAOX-01 2 218712358 218712358 G T TNS1 Missense_Mutation p.P836Q 0.13 tolerated(0.11) probably_damaging(0.976) TCGA-BF-AAOX-01 2 218999812 218999812 C T CXCR2 Silent p.L96L 0.23 TCGA-BF-AAOX-01 2 219604880 219604880 A G TTLL4 Silent p.E529E 0.34 TCGA-BF-AAOX-01 2 220085870 220085870 G A ATG9A Missense_Mutation p.P767L 0.26 tolerated_low_confidence(0.17) benign(0.04) TCGA-BF-AAOX-01 2 220349079 220349079 G A SPEG Silent p.G2298G 0.48 TCGA-BF-AAOX-01 2 220371034 220371034 C T GMPPA Missense_Mutation p.A351V 0.33 deleterious(0) possibly_damaging(0.743) TCGA-BF-AAOX-01 2 227896959 227896959 C T COL4A4 Missense_Mutation p.G1204E 0.36 unknown(0) TCGA-BF-AAOX-01 2 227912265 227912265 C T COL4A4 Missense_Mutation p.G1072E 0.33 unknown(0) TCGA-BF-AAOX-01 2 227942636 227942636 C T COL4A4 Missense_Mutation p.G654D 0.22 probably_damaging(0.989) TCGA-BF-AAOX-01 2 228762923 228762923 G A DAW1 Missense_Mutation p.D156N 0.41 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 2 228883106 228883106 C T SPHKAP Missense_Mutation p.D822N 0.33 tolerated(0.95) benign(0.001) TCGA-BF-AAOX-01 2 228883985 228883985 G A SPHKAP Missense_Mutation p.P529S 0.41 tolerated(0.68) benign(0.005) TCGA-BF-AAOX-01 2 228884861 228884861 T C SPHKAP Missense_Mutation p.I237V 0.36 tolerated(0.27) benign(0.013) TCGA-BF-AAOX-01 2 229890804 229890804 G A PID1 Silent p.V97V 0.26 TCGA-BF-AAOX-01 2 230679904 230679904 G A TRIP12 Missense_Mutation p.H500Y 0.09 deleterious(0) probably_damaging(0.962) TCGA-BF-AAOX-01 2 231775414 231775414 G A GPR55 Silent p.S88S 0.41 TCGA-BF-AAOX-01 2 233344823 233344823 C T ECEL1 3'UTR 0.45 TCGA-BF-AAOX-01 2 234846039 234846039 G A TRPM8 Missense_Mutation p.M78I 0.23 tolerated(0.45) benign(0) TCGA-BF-AAOX-01 2 234891724 234891724 C T TRPM8 Missense_Mutation p.L873F 0.28 tolerated(0.08) probably_damaging(0.968) TCGA-BF-AAOX-01 2 234975179 234975179 G A SPP2 Missense_Mutation p.M149I 0.37 tolerated(0.09) benign(0.114) TCGA-BF-AAOX-01 2 238287580 238287580 C T COL6A3 Silent p.T732T 0.33 TCGA-BF-AAOX-01 2 238303307 238303307 C T COL6A3 Missense_Mutation p.G211E 0.30 probably_damaging(1) TCGA-BF-AAOX-01 2 241826465 241826465 G A C2orf54 3'UTR 0.18 TCGA-BF-AAOX-01 2 241826466 241826466 G A C2orf54 3'UTR 0.17 TCGA-BF-AAOX-01 2 242003086 242003086 T G SNED1 Silent p.P818P 0.25 TCGA-BF-AAOX-01 2 26693501 26693501 C T OTOF Nonsense_Mutation p.W1328* 0.34 TCGA-BF-AAOX-01 2 26699830 26699830 C T OTOF Missense_Mutation p.D869N 0.28 tolerated(0.24) probably_damaging(0.974) TCGA-BF-AAOX-01 2 27150172 27150172 C T DPYSL5 Nonsense_Mutation p.Q158* 0.31 TCGA-BF-AAOX-01 2 27375721 27375721 C T TCF23 Missense_Mutation p.L211F 0.26 tolerated_low_confidence(0.06) benign(0.029) TCGA-BF-AAOX-01 2 27800836 27800836 G A C2orf16 Missense_Mutation p.G466E 0.23 tolerated(0.21) benign(0.018) TCGA-BF-AAOX-01 2 27876586 27876586 C T SUPT7L Nonsense_Mutation p.W337* 0.33 TCGA-BF-AAOX-01 2 29268242 29268242 C T FAM179A Silent p.G896G 0.24 TCGA-BF-AAOX-01 2 29294290 29294290 C T C2orf71 Silent p.K946K 0.50 TCGA-BF-AAOX-01 2 29430057 29430057 G A ALK Silent p.F1306F 0.33 TCGA-BF-AAOX-01 2 29498283 29498283 C T ALK Missense_Mutation p.D633N 0.35 tolerated(0.1) probably_damaging(1) TCGA-BF-AAOX-01 2 30142875 30142875 G A ALK Silent p.F217F 0.27 TCGA-BF-AAOX-01 2 31215869 31215869 G A GALNT14 Intron 0.52 TCGA-BF-AAOX-01 2 33588572 33588572 A G LTBP1 Silent p.K1462K 0.28 TCGA-BF-AAOX-01 2 33784077 33784077 G A RASGRP3 Missense_Mutation p.E682K 0.33 deleterious_low_confidence(0.04) benign(0.014) TCGA-BF-AAOX-01 2 40366593 40366593 C T SLC8A1 Silent p.L831L 0.15 TCGA-BF-AAOX-01 2 40366725 40366725 G A SLC8A1 Silent p.V787V 0.30 TCGA-BF-AAOX-01 2 44970784 44970784 C T CAMKMT Missense_Mutation p.T216I 0.19 deleterious(0.02) benign(0.153) TCGA-BF-AAOX-01 2 49190601 49190601 A C FSHR Missense_Mutation p.S453R 0.40 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 2 50692606 50692606 G A NRXN1 Missense_Mutation p.S1153F 0.21 deleterious(0) possibly_damaging(0.862) TCGA-BF-AAOX-01 2 60687706 60687706 G T BCL11A Missense_Mutation p.Q781K 0.29 deleterious(0) probably_damaging(0.981) TCGA-BF-AAOX-01 2 61441429 61441429 G A USP34 Silent p.I2816I 0.31 TCGA-BF-AAOX-01 2 62067000 62067000 C T FAM161A Missense_Mutation p.R380Q 0.31 deleterious(0.02) possibly_damaging(0.853) TCGA-BF-AAOX-01 2 63401907 63401907 A C WDPCP Nonsense_Mutation p.L659* 0.33 TCGA-BF-AAOX-01 2 69207156 69207156 C T GKN1 Missense_Mutation p.R157C 0.20 deleterious(0) possibly_damaging(0.863) TCGA-BF-AAOX-01 2 69703076 69703076 G A AAK1 Silent p.S937S 0.30 TCGA-BF-AAOX-01 2 70143328 70143328 C T MXD1 Missense_Mutation p.S50F 0.29 deleterious(0.02) possibly_damaging(0.534) TCGA-BF-AAOX-01 2 73268044 73268044 G A SFXN5 Missense_Mutation p.A63V 0.30 deleterious(0.02) possibly_damaging(0.791) TCGA-BF-AAOX-01 2 73957718 73957718 G A TPRKB Missense_Mutation p.P137L 0.35 deleterious(0) benign(0.276) TCGA-BF-AAOX-01 2 79254965 79254965 G A REG3G Nonsense_Mutation p.W122* 0.28 TCGA-BF-AAOX-01 2 80801299 80801299 T C CTNNA2 Missense_Mutation p.F585L 0.29 deleterious(0) possibly_damaging(0.765) TCGA-BF-AAOX-01 2 80875044 80875044 C T CTNNA2 3'UTR 0.42 TCGA-BF-AAOX-01 2 89309623 89309623 C T IGKV1-9 Silent p.L69L 0.29 TCGA-BF-AAOX-01 2 89417004 89417004 C T IGKV1-17 Silent p.Q60Q 0.32 TCGA-BF-AAOX-01 2 90078058 90078058 C A IGKV3D-20 Missense_Mutation p.S32Y 0.31 deleterious(0.03) benign(0.061) TCGA-BF-AAOX-01 2 95542446 95542446 G A TEKT4 Missense_Mutation p.D414N 0.30 deleterious(0.01) possibly_damaging(0.672) TCGA-BF-AAOX-01 2 99013094 99013094 G A CNGA3 Silent p.E487E 0.35 TCGA-BF-AAOX-01 3 10331460 10331460 C T GHRL Missense_Mutation p.E71K 0.33 tolerated(0.13) benign(0.052) TCGA-BF-AAOX-01 3 10861197 10861197 C T SLC6A11 Missense_Mutation p.P102S 0.34 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 3 11070473 11070473 C T SLC6A1 Silent p.I377I 0.41 TCGA-BF-AAOX-01 3 111898411 111898411 C T SLC9C1 Missense_Mutation p.M962I 0.53 tolerated(0.09) probably_damaging(0.998) TCGA-BF-AAOX-01 3 113300226 113300226 G A SIDT1 Missense_Mutation p.D228N 0.49 tolerated(0.13) possibly_damaging(0.826) TCGA-BF-AAOX-01 3 113320449 113320449 G A SIDT1 Missense_Mutation p.V354M 0.56 tolerated(0.22) benign(0.027) TCGA-BF-AAOX-01 3 113375569 113375569 T G KIAA2018 Missense_Mutation p.T1654P 0.52 benign(0.006) TCGA-BF-AAOX-01 3 121433816 121433816 G A GOLGB1 Silent p.L432L 0.54 TCGA-BF-AAOX-01 3 121643821 121643821 C T SLC15A2 Silent p.F355F 0.44 TCGA-BF-AAOX-01 3 122004042 122004042 G A CASR 3'UTR 0.41 TCGA-BF-AAOX-01 3 123419644 123419644 C T MYLK Missense_Mutation p.E891K 0.22 tolerated(0.12) benign(0.009) TCGA-BF-AAOX-01 3 128204775 128204775 C T GATA2 Silent p.K222K 0.39 TCGA-BF-AAOX-01 3 129281633 129281633 G A PLXND1 Missense_Mutation p.L1608F 0.44 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 3 12978010 12978010 C T IQSEC1 Missense_Mutation p.G183E 0.25 tolerated(0.69) benign(0.125) TCGA-BF-AAOX-01 3 136192388 136192388 C T STAG1 Missense_Mutation p.R373Q 0.18 deleterious(0) probably_damaging(0.975) TCGA-BF-AAOX-01 3 137964044 137964044 C T ARMC8 Intron 0.48 TCGA-BF-AAOX-01 3 145912947 145912947 C T PLSCR4 Silent p.K303K 0.54 TCGA-BF-AAOX-01 3 14745997 14745997 G A C3orf20 Silent p.Q344Q 0.36 TCGA-BF-AAOX-01 3 150659388 150659388 G A CLRN1 Silent p.Y138Y 0.46 TCGA-BF-AAOX-01 3 150917160 150917160 G A GPR171 Missense_Mutation p.S5L 0.58 deleterious_low_confidence(0.02) benign(0.204) TCGA-BF-AAOX-01 3 151161463 151161463 G A IGSF10 Missense_Mutation p.H1758Y 0.45 deleterious(0.03) benign(0.208) TCGA-BF-AAOX-01 3 154855939 154855939 C T MME Missense_Mutation p.R257C 0.53 deleterious(0) probably_damaging(0.976) TCGA-BF-AAOX-01 3 155271954 155271954 T C PLCH1 Silent p.P355P 0.60 TCGA-BF-AAOX-01 3 167051689 167051689 T A ZBBX Missense_Mutation p.N205Y 0.48 deleterious(0) possibly_damaging(0.751) TCGA-BF-AAOX-01 3 176750919 176750926 GATGCACT - TBL1XR1 Splice_Site p.X417_splice 0.39 TCGA-BF-AAOX-01 3 179306637 179306637 G A MRPL47 3'UTR 0.55 TCGA-BF-AAOX-01 3 183823708 183823708 C T HTR3E Silent p.F318F 0.52 TCGA-BF-AAOX-01 3 186460078 186460078 G A KNG1 Missense_Mutation p.M631I 0.60 tolerated(0.37) benign(0.002) TCGA-BF-AAOX-01 3 192053206 192053206 C T FGF12 Missense_Mutation p.G120R 0.52 deleterious(0.05) probably_damaging(0.985) TCGA-BF-AAOX-01 3 193855621 193855622 - C HES1 Frame_Shift_Ins p.Q149Pfs*66 0.35 TCGA-BF-AAOX-01 3 19479676 19479676 A C KCNH8 Missense_Mutation p.K400Q 0.34 deleterious(0.04) probably_damaging(0.974) TCGA-BF-AAOX-01 3 19961414 19961414 C T EFHB Missense_Mutation p.G303R 0.31 deleterious(0) probably_damaging(0.912) TCGA-BF-AAOX-01 3 21467064 21467064 C T ZNF385D Missense_Mutation p.G258R 0.32 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 3 23574050 23574050 C T UBE2E2 Silent p.T122T 0.24 TCGA-BF-AAOX-01 3 25502747 25502747 C T RARB Missense_Mutation p.P74L 0.23 tolerated(0.3) probably_damaging(0.994) TCGA-BF-AAOX-01 3 26751559 26751559 C T LRRC3B Silent p.A132A 0.37 TCGA-BF-AAOX-01 3 35763211 35763211 C T ARPP21 Silent p.S336S 0.35 TCGA-BF-AAOX-01 3 36874872 36874872 C T TRANK1 Missense_Mutation p.E2024K 0.17 tolerated(0.24) benign(0.004) TCGA-BF-AAOX-01 3 36893831 36893831 G A TRANK1 Missense_Mutation p.L1475F 0.33 deleterious(0) probably_damaging(0.952) TCGA-BF-AAOX-01 3 38051709 38051709 C T PLCD1 Silent p.Q371Q 0.28 TCGA-BF-AAOX-01 3 38417660 38417660 C T XYLB Missense_Mutation p.R353C 0.32 tolerated(0.16) benign(0.003) TCGA-BF-AAOX-01 3 38674745 38674745 C T SCN5A Silent p.R18R 0.13 TCGA-BF-AAOX-01 3 38770294 38770294 G A SCN10A Silent p.I793I 0.26 TCGA-BF-AAOX-01 3 38938351 38938351 C T SCN11A Silent p.V796V 0.42 TCGA-BF-AAOX-01 3 38938640 38938640 G A SCN11A Missense_Mutation p.A700V 0.34 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 3 39374191 39374191 C T CCR8 Silent p.F123F 0.33 TCGA-BF-AAOX-01 3 39374683 39374683 C T CCR8 Silent p.I287I 0.33 TCGA-BF-AAOX-01 3 402077 402077 A C CHL1 Missense_Mutation p.I426L 0.30 tolerated(0.59) benign(0.028) TCGA-BF-AAOX-01 3 42781231 42781231 C T CCDC13 Silent p.R353R 0.26 TCGA-BF-AAOX-01 3 44776793 44776793 C T ZNF501 3'UTR 0.42 TCGA-BF-AAOX-01 3 45989102 45989102 C T CXCR6 3'UTR 0.25 TCGA-BF-AAOX-01 3 46401279 46401279 C T CCR2 Silent p.L351L 0.30 TCGA-BF-AAOX-01 3 47125623 47125623 T A SETD2 Missense_Mutation p.I1883F 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-BF-AAOX-01 3 4836820 4836820 C T ITPR1 Silent p.L2279L 0.33 TCGA-BF-AAOX-01 3 49200883 49200883 C T CCDC71 Silent p.G253G 0.28 TCGA-BF-AAOX-01 3 49689971 49689971 C T BSN Silent p.T994T 0.36 TCGA-BF-AAOX-01 3 49924630 49924630 G A MST1R 3'UTR 0.35 TCGA-BF-AAOX-01 3 51352537 51352537 G A DOCK3 Missense_Mutation p.R1127K 0.24 tolerated(0.21) possibly_damaging(0.907) TCGA-BF-AAOX-01 3 52536225 52536225 C T STAB1 Silent p.F156F 0.25 TCGA-BF-AAOX-01 3 56468395 56468395 G A ERC2 Missense_Mutation p.S214F 0.29 tolerated(0.12) benign(0.014) TCGA-BF-AAOX-01 3 56468445 56468445 C T ERC2 Silent p.R197R 0.41 TCGA-BF-AAOX-01 3 57563087 57563087 C T ARF4 Missense_Mutation p.D96N 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.841) TCGA-BF-AAOX-01 3 64133293 64133293 G A PRICKLE2 Silent p.S291S 0.29 TCGA-BF-AAOX-01 3 69244469 69244469 G A FRMD4B Silent p.I427I 0.26 TCGA-BF-AAOX-01 3 71102817 71102817 G A FOXP1 Silent p.L132L 0.29 TCGA-BF-AAOX-01 3 72427701 72427701 C T RYBP Silent p.K263K 0.37 TCGA-BF-AAOX-01 3 77612392 77612392 G A ROBO2 Missense_Mutation p.D548N 0.36 tolerated(0.17) possibly_damaging(0.708) TCGA-BF-AAOX-01 3 7782121 7782121 G A GRM7 3'UTR 0.33 TCGA-BF-AAOX-01 3 97686249 97686249 G A MINA Silent p.P63P 0.44 TCGA-BF-AAOX-01 3 97851628 97851628 G A OR5H1 Silent p.L29L 0.42 TCGA-BF-AAOX-01 3 98072952 98072952 C T OR5K4 Silent p.F85F 0.48 TCGA-BF-AAOX-01 4 100264012 100264012 C T ADH1C Silent p.K256K 0.31 TCGA-BF-AAOX-01 4 101109295 101109295 C T DDIT4L Missense_Mutation p.E41K 0.27 deleterious(0.04) benign(0.395) TCGA-BF-AAOX-01 4 1016249 1016249 C T FGFRL1 Missense_Mutation p.T113I 0.26 deleterious(0) probably_damaging(0.987) TCGA-BF-AAOX-01 4 102783692 102783692 G A BANK1 Missense_Mutation p.E212K 0.33 deleterious(0) probably_damaging(0.994) TCGA-BF-AAOX-01 4 102839334 102839334 C T BANK1 Silent p.F398F 0.29 TCGA-BF-AAOX-01 4 104080037 104080037 A G CENPE Missense_Mutation p.Y870H 0.24 benign(0) TCGA-BF-AAOX-01 4 113462047 113462047 G A C4orf21 Missense_Mutation p.S1947L 0.57 deleterious(0) possibly_damaging(0.555) TCGA-BF-AAOX-01 4 119220038 119220038 G A PRSS12 Missense_Mutation p.H563Y 0.45 tolerated(0.19) possibly_damaging(0.809) TCGA-BF-AAOX-01 4 122082339 122082339 C T TNIP3 Missense_Mutation p.M110I 0.18 tolerated(0.1) benign(0) TCGA-BF-AAOX-01 4 124323680 124323680 T C SPRY1 Missense_Mutation p.S312P 0.28 tolerated(0.96) benign(0.002) TCGA-BF-AAOX-01 4 126370982 126370982 T C FAT4 Silent p.N2937N 0.36 TCGA-BF-AAOX-01 4 126372576 126372576 G A FAT4 Missense_Mutation p.D3469N 0.35 probably_damaging(1) TCGA-BF-AAOX-01 4 126372782 126372782 C T FAT4 Silent p.L3537L 0.33 TCGA-BF-AAOX-01 4 126408720 126408720 G A FAT4 Missense_Mutation p.G4346E 0.36 probably_damaging(0.985) TCGA-BF-AAOX-01 4 126408761 126408761 G A FAT4 Missense_Mutation p.A4360T 0.27 benign(0.006) TCGA-BF-AAOX-01 4 126411707 126411707 G A FAT4 Missense_Mutation p.G4577E 0.34 probably_damaging(0.999) TCGA-BF-AAOX-01 4 129880812 129880812 A C SCLT1 Missense_Mutation p.I330M 0.37 deleterious(0.03) possibly_damaging(0.865) TCGA-BF-AAOX-01 4 138442398 138442398 G A PCDH18 Missense_Mutation p.P1065S 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-BF-AAOX-01 4 138451025 138451025 C T PCDH18 Missense_Mutation p.E740K 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-BF-AAOX-01 4 141446604 141446604 T C ELMOD2 Missense_Mutation p.F8L 0.28 tolerated(0.16) benign(0.114) TCGA-BF-AAOX-01 4 144380544 144380544 C T GAB1 Missense_Mutation p.P561L 0.27 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 4 154625304 154625304 G A TLR2 Silent p.L415L 0.34 TCGA-BF-AAOX-01 4 156135975 156135975 G A NPY2R Missense_Mutation p.S295N 0.36 tolerated(0.24) benign(0.003) TCGA-BF-AAOX-01 4 158284078 158284078 G A GRIA2 Missense_Mutation p.R845Q 0.42 deleterious(0.03) possibly_damaging(0.723) TCGA-BF-AAOX-01 4 16008166 16008166 G A PROM1 Silent p.L483L 0.50 TCGA-BF-AAOX-01 4 164271682 164271682 C T NPY5R Missense_Mutation p.S86F 0.32 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 4 164272470 164272470 G A NPY5R Missense_Mutation p.E349K 0.34 tolerated(0.86) benign(0.006) TCGA-BF-AAOX-01 4 166243238 166243238 T G KLHL2 3'UTR 0.52 TCGA-BF-AAOX-01 4 167655907 167655907 T C SPOCK3 3'UTR 0.28 TCGA-BF-AAOX-01 4 167675880 167675880 C T SPOCK3 Missense_Mutation p.R240K 0.25 tolerated(1) benign(0.062) TCGA-BF-AAOX-01 4 170398364 170398364 G A NEK1 Missense_Mutation p.S782L 0.50 tolerated(0.46) benign(0.003) TCGA-BF-AAOX-01 4 175897050 175897050 G A ADAM29 Missense_Mutation p.G125E 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 4 176733493 176733493 C T GPM6A Intron 0.33 TCGA-BF-AAOX-01 4 177058704 177058704 G A WDR17 Missense_Mutation p.R458Q 0.26 tolerated(0.12) benign(0.004) TCGA-BF-AAOX-01 4 177604924 177604924 C T VEGFC 3'UTR 0.23 TCGA-BF-AAOX-01 4 177605173 177605173 C T VEGFC Silent p.T389T 0.23 TCGA-BF-AAOX-01 4 183673041 183673041 C T TENM3 Missense_Mutation p.R1240C 0.24 deleterious(0) benign(0.095) TCGA-BF-AAOX-01 4 185941680 185941680 G A HELT Silent p.P246P 0.43 TCGA-BF-AAOX-01 4 186544548 186544548 C T SORBS2 Missense_Mutation p.E775K 0.27 deleterious(0) probably_damaging(0.996) TCGA-BF-AAOX-01 4 187521212 187521212 A T FAT1 Nonsense_Mutation p.Y3981* 0.38 TCGA-BF-AAOX-01 4 187535364 187535364 G A FAT1 Silent p.F3070F 0.41 TCGA-BF-AAOX-01 4 187629322 187629322 G A FAT1 Missense_Mutation p.L554F 0.28 benign(0.195) TCGA-BF-AAOX-01 4 189060821 189060821 C T TRIML1 Silent p.L37L 0.30 TCGA-BF-AAOX-01 4 2073974 2073974 G A POLN Missense_Mutation p.P857L 0.29 deleterious(0) probably_damaging(0.986) TCGA-BF-AAOX-01 4 2073975 2073975 G A POLN Missense_Mutation p.P857S 0.29 tolerated(0.08) probably_damaging(0.971) TCGA-BF-AAOX-01 4 25677939 25677939 C T SLC34A2 Silent p.L547L 0.34 TCGA-BF-AAOX-01 4 26483593 26483593 G A CCKAR Silent p.I318I 0.32 TCGA-BF-AAOX-01 4 31144196 31144196 C T PCDH7 Missense_Mutation p.P1165S 0.17 tolerated(0.11) possibly_damaging(0.669) TCGA-BF-AAOX-01 4 36115834 36115834 C T ARAP2 Missense_Mutation p.D1372N 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-BF-AAOX-01 4 36230249 36230249 C T ARAP2 Missense_Mutation p.R287Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 4 40440035 40440035 C T RBM47 Silent p.E292E 0.31 TCGA-BF-AAOX-01 4 40763210 40763210 T A NSUN7 Missense_Mutation p.I127N 0.30 deleterious(0) possibly_damaging(0.781) TCGA-BF-AAOX-01 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.31 TCGA-BF-AAOX-01 4 533074 533074 C T PIGG Silent p.L956L 0.44 TCGA-BF-AAOX-01 4 54374316 54374316 C T LNX1 Silent p.A153A 0.43 TCGA-BF-AAOX-01 4 55131246 55131246 G A PDGFRA Intron 0.36 TCGA-BF-AAOX-01 4 55968151 55968151 C T KDR Missense_Mutation p.V727M 0.29 deleterious(0) probably_damaging(0.988) TCGA-BF-AAOX-01 4 57265453 57265453 C A PPAT Missense_Mutation p.L376F 0.30 deleterious(0) probably_damaging(0.964) TCGA-BF-AAOX-01 4 6303832 6303832 C T WFS1 Silent p.F770F 0.33 TCGA-BF-AAOX-01 4 67142560 67142560 G A MIR1269A RNA 0.39 TCGA-BF-AAOX-01 4 77084461 77084461 G A SCARB2 Missense_Mutation p.P439S 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-BF-AAOX-01 4 79531245 79531245 A T ANXA3 Missense_Mutation p.L316F 0.41 deleterious(0) possibly_damaging(0.74) TCGA-BF-AAOX-01 4 79747210 79747210 C T BMP2K Silent p.F66F 0.38 TCGA-BF-AAOX-01 4 8009854 8009854 G A ABLIM2 Missense_Mutation p.S517F 0.39 deleterious(0) benign(0.197) TCGA-BF-AAOX-01 4 82026994 82026994 G A PRKG2 Missense_Mutation p.P679L 0.16 deleterious(0.01) probably_damaging(0.96) TCGA-BF-AAOX-01 4 8229113 8229113 C T SH3TC1 Silent p.F564F 0.25 TCGA-BF-AAOX-01 4 83745782 83745782 G A SEC31A Missense_Mutation p.P1113S 0.25 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 4 83971103 83971103 G A COPS4 Missense_Mutation p.V126M 0.35 tolerated(0.39) benign(0.02) TCGA-BF-AAOX-01 4 88987028 88987028 G T PKD2 Missense_Mutation p.E785D 0.36 deleterious(0.03) possibly_damaging(0.601) TCGA-BF-AAOX-01 4 89726196 89726196 C T FAM13A Missense_Mutation p.E339K 0.35 deleterious(0.03) benign(0.017) TCGA-BF-AAOX-01 4 9557926 9557926 C T MIR548I2 RNA 0.27 TCGA-BF-AAOX-01 4 9909883 9909883 G A SLC2A9 Silent p.I363I 0.32 TCGA-BF-AAOX-01 4 99399841 99399841 G A TSPAN5 Missense_Mutation p.P191S 0.29 tolerated(0.05) possibly_damaging(0.877) TCGA-BF-AAOX-01 5 101572487 101572487 C T SLCO4C1 3'UTR 0.36 TCGA-BF-AAOX-01 5 111575385 111575385 C T EPB41L4A Missense_Mutation p.G313R 0.34 tolerated(0.07) possibly_damaging(0.815) TCGA-BF-AAOX-01 5 11346661 11346661 G A CTNND2 Missense_Mutation p.A484V 0.22 tolerated(0.21) benign(0.028) TCGA-BF-AAOX-01 5 114861055 114861055 G A FEM1C Silent p.Y268Y 0.34 TCGA-BF-AAOX-01 5 115628266 115628266 T A COMMD10 3'UTR 0.27 TCGA-BF-AAOX-01 5 122751793 122751793 G A CEP120 Nonsense_Mutation p.Q78* 0.33 TCGA-BF-AAOX-01 5 126755861 126755861 C T MEGF10 Missense_Mutation p.P518S 0.30 tolerated(0.1) benign(0.11) TCGA-BF-AAOX-01 5 127510310 127510310 G A SLC12A2 Missense_Mutation p.D961N 0.32 tolerated(0.17) benign(0.086) TCGA-BF-AAOX-01 5 127714541 127714541 C T FBN2 Missense_Mutation p.C549Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-BF-AAOX-01 5 128302248 128302248 C T SLC27A6 Missense_Mutation p.R140C 0.40 deleterious(0.01) benign(0.12) TCGA-BF-AAOX-01 5 1293513 1293513 G A TERT Silent p.S496S 0.39 TCGA-BF-AAOX-01 5 137848536 137848536 C T ETF1 Missense_Mutation p.D217N 0.38 tolerated(0.24) benign(0.045) TCGA-BF-AAOX-01 5 13820578 13820578 G A DNAH5 Missense_Mutation p.P2240S 0.26 possibly_damaging(0.641) TCGA-BF-AAOX-01 5 13859620 13859620 G A DNAH5 Silent p.L1631L 0.32 TCGA-BF-AAOX-01 5 138994523 138994523 G T UBE2D2 Missense_Mutation p.Q92H 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.825) TCGA-BF-AAOX-01 5 13901544 13901544 G A DNAH5 Silent p.I623I 0.43 TCGA-BF-AAOX-01 5 140308113 140308113 G A PCDHAC1 Missense_Mutation p.V546I 0.54 tolerated(0.14) benign(0.065) TCGA-BF-AAOX-01 5 140503130 140503130 C T PCDHB4 Missense_Mutation p.S517L 0.47 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-BF-AAOX-01 5 140558000 140558000 G A PCDHB8 Missense_Mutation p.D129N 0.10 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-BF-AAOX-01 5 140626556 140626556 C T PCDHB15 Silent p.I470I 0.41 TCGA-BF-AAOX-01 5 140870434 140870434 C T PCDHGC5 Missense_Mutation p.P543S 0.51 tolerated(0.52) benign(0.019) TCGA-BF-AAOX-01 5 1432752 1432752 G A SLC6A3 Silent p.I160I 0.49 TCGA-BF-AAOX-01 5 154395138 154395138 G A KIF4B Silent p.K573K 0.41 TCGA-BF-AAOX-01 5 156514244 156514244 G A HAVCR2 Missense_Mutation p.R259C 0.33 deleterious(0.02) probably_damaging(0.947) TCGA-BF-AAOX-01 5 159661867 159661868 - G FABP6 Frame_Shift_Ins p.F144Lfs*13 0.49 TCGA-BF-AAOX-01 5 167489241 167489241 A G TENM2 Missense_Mutation p.R496G 0.41 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 5 167674466 167674466 G A TENM2 Nonsense_Mutation p.W2174* 0.48 TCGA-BF-AAOX-01 5 172197601 172197601 A G DUSP1 Missense_Mutation p.F119L 0.44 tolerated(0.35) benign(0.005) TCGA-BF-AAOX-01 5 176562343 176562343 C T NSD1 Missense_Mutation p.S80F 0.53 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-AAOX-01 5 176696807 176696807 A T NSD1 Missense_Mutation p.K1836N 0.42 tolerated(0.07) benign(0.168) TCGA-BF-AAOX-01 5 176696808 176696808 G A NSD1 Missense_Mutation p.A1837T 0.42 deleterious(0) probably_damaging(0.993) TCGA-BF-AAOX-01 5 23509671 23509671 G A PRDM9 Silent p.V54V 0.31 TCGA-BF-AAOX-01 5 23522821 23522821 C T PRDM9 Missense_Mutation p.R237C 0.36 tolerated(0.1) benign(0) TCGA-BF-AAOX-01 5 23523452 23523452 G A PRDM9 Nonsense_Mutation p.W312* 0.38 TCGA-BF-AAOX-01 5 23526497 23526497 G A PRDM9 Missense_Mutation p.D434N 0.41 tolerated(0.28) benign(0.001) TCGA-BF-AAOX-01 5 24488047 24488047 G A CDH10 Missense_Mutation p.P698S 0.29 tolerated(0.52) probably_damaging(0.992) TCGA-BF-AAOX-01 5 35065901 35065901 C T PRLR Missense_Mutation p.E387K 0.19 tolerated(0.75) benign(0.006) TCGA-BF-AAOX-01 5 35072722 35072722 G A PRLR Silent p.L166L 0.34 TCGA-BF-AAOX-01 5 35968134 35968134 C T UGT3A1 Missense_Mutation p.A100T 0.41 tolerated(0.4) benign(0.057) TCGA-BF-AAOX-01 5 36251469 36251469 C T RANBP3L Missense_Mutation p.E459K 0.38 deleterious(0) benign(0.21) TCGA-BF-AAOX-01 5 38370509 38370509 G A EGFLAM Missense_Mutation p.M219I 0.30 tolerated_low_confidence(0.15) benign(0.002) TCGA-BF-AAOX-01 5 38406965 38406965 G A EGFLAM Silent p.K288K 0.25 TCGA-BF-AAOX-01 5 38418293 38418293 G A EGFLAM Silent p.V540V 0.43 TCGA-BF-AAOX-01 5 38530672 38530672 G A LIFR Silent p.F26F 0.33 TCGA-BF-AAOX-01 5 38869168 38869168 C T OSMR Nonsense_Mutation p.Q8* 0.29 TCGA-BF-AAOX-01 5 38881757 38881757 C T OSMR Silent p.L103L 0.27 TCGA-BF-AAOX-01 5 38904078 38904078 C T OSMR Silent p.F362F 0.30 TCGA-BF-AAOX-01 5 41181603 41181603 C T C6 Missense_Mutation p.G262E 0.32 tolerated(1) benign(0.001) TCGA-BF-AAOX-01 5 41929889 41929889 C T FBXO4 Silent p.I172I 0.23 TCGA-BF-AAOX-01 5 42700087 42700087 G A GHR Missense_Mutation p.E201K 0.56 tolerated(0.16) benign(0.395) TCGA-BF-AAOX-01 5 43446390 43446390 G A C5orf28 Silent p.F194F 0.20 TCGA-BF-AAOX-01 5 45262407 45262407 C T HCN1 Silent p.P763P 0.29 TCGA-BF-AAOX-01 5 54603787 54603787 T A SKIV2L2 5'UTR 0.30 TCGA-BF-AAOX-01 5 5461048 5461048 C T KIAA0947 Missense_Mutation p.P534L 0.29 tolerated(0.14) benign(0.185) TCGA-BF-AAOX-01 5 5464524 5464524 C T KIAA0947 Missense_Mutation p.P1693S 0.31 deleterious(0.04) possibly_damaging(0.519) TCGA-BF-AAOX-01 5 57790336 57790336 A T GAPT 5'UTR 0.30 TCGA-BF-AAOX-01 5 60188108 60188108 G A ERCC8 Intron 0.24 TCGA-BF-AAOX-01 5 63257120 63257120 C T HTR1A Missense_Mutation p.D143N 0.47 tolerated(0.08) probably_damaging(0.999) TCGA-BF-AAOX-01 5 6337335 6337335 G A CTD-2324F15.2 RNA 0.30 TCGA-BF-AAOX-01 5 66460000 66460000 G A MAST4 Missense_Mutation p.E1665K 0.50 benign(0.072) TCGA-BF-AAOX-01 5 6748629 6748629 C T PAPD7 Silent p.F254F 0.42 TCGA-BF-AAOX-01 5 73930915 73930915 C T ENC1 Missense_Mutation p.D466N 0.30 tolerated(0.2) possibly_damaging(0.869) TCGA-BF-AAOX-01 5 74101028 74101028 C T FAM169A Missense_Mutation p.R251Q 0.29 deleterious(0) probably_damaging(0.964) TCGA-BF-AAOX-01 5 74109752 74109752 C T FAM169A Missense_Mutation p.G195R 0.25 deleterious(0) probably_damaging(0.997) TCGA-BF-AAOX-01 5 75914415 75914415 G A F2RL2 Silent p.T39T 0.32 TCGA-BF-AAOX-01 5 75970429 75970429 T C IQGAP2 Missense_Mutation p.V1141A 0.35 deleterious(0) probably_damaging(0.976) TCGA-BF-AAOX-01 5 76028933 76028933 C T F2R Nonsense_Mutation p.R295* 0.39 TCGA-BF-AAOX-01 5 7868163 7868163 G A FASTKD3 Missense_Mutation p.R12C 0.30 deleterious(0) possibly_damaging(0.517) TCGA-BF-AAOX-01 5 79026810 79026810 C T CMYA5 Missense_Mutation p.S741L 0.38 benign(0) TCGA-BF-AAOX-01 5 79027616 79027616 C T CMYA5 Missense_Mutation p.P1010S 0.16 probably_damaging(0.992) TCGA-BF-AAOX-01 5 79030466 79030466 G A CMYA5 Missense_Mutation p.E1960K 0.15 probably_damaging(0.956) TCGA-BF-AAOX-01 5 82937378 82937378 G A HAPLN1 Silent p.F334F 0.38 TCGA-BF-AAOX-01 5 884077 884077 G A BRD9 Silent p.I314I 0.38 TCGA-BF-AAOX-01 5 89953859 89953859 G A GPR98 Missense_Mutation p.D1506N 0.35 possibly_damaging(0.811) TCGA-BF-AAOX-01 5 89979950 89979950 C T GPR98 Missense_Mutation p.S2071F 0.28 probably_damaging(0.956) TCGA-BF-AAOX-01 5 90001388 90001388 G A GPR98 Missense_Mutation p.G2853E 0.30 probably_damaging(0.999) TCGA-BF-AAOX-01 5 90008191 90008191 C T GPR98 Nonsense_Mutation p.Q3044* 0.29 TCGA-BF-AAOX-01 5 90015973 90015973 A G GPR98 Missense_Mutation p.T3186A 0.30 possibly_damaging(0.899) TCGA-BF-AAOX-01 5 93217321 93217321 T A FAM172A Missense_Mutation p.Q214L 0.30 tolerated(0.08) benign(0.054) TCGA-BF-AAOX-01 5 9379935 9379935 C T SEMA5A Missense_Mutation p.E42K 0.30 tolerated(0.05) possibly_damaging(0.64) TCGA-BF-AAOX-01 5 94353103 94353103 C T MCTP1 Missense_Mutation p.R269K 0.23 tolerated(0.48) benign(0.044) TCGA-BF-AAOX-01 5 9630093 9630093 G A TAS2R1 Missense_Mutation p.L18F 0.34 tolerated(0.12) possibly_damaging(0.656) TCGA-BF-AAOX-01 6 100895203 100895203 G A SIM1 Silent p.I313I 0.42 TCGA-BF-AAOX-01 6 107035623 107035623 G A RTN4IP1 Silent p.N307N 0.37 TCGA-BF-AAOX-01 6 107035624 107035624 T A RTN4IP1 Missense_Mutation p.N307I 0.35 deleterious(0) probably_damaging(0.987) TCGA-BF-AAOX-01 6 10874995 10874995 C G GCM2 Missense_Mutation p.G252R 0.23 deleterious(0.02) benign(0.059) TCGA-BF-AAOX-01 6 10928671 10928671 C T SYCP2L Silent p.F492F 0.31 TCGA-BF-AAOX-01 6 114378646 114378646 G A HS3ST5 Silent p.F272F 0.32 TCGA-BF-AAOX-01 6 116381217 116381217 C T FRK Silent p.E86E 0.38 TCGA-BF-AAOX-01 6 117589434 117589434 C T VGLL2 Silent p.S57S 0.28 TCGA-BF-AAOX-01 6 119345230 119345230 C T FAM184A Missense_Mutation p.G303E 0.37 tolerated(0.4) benign(0.023) TCGA-BF-AAOX-01 6 121768722 121768722 G A GJA1 Silent p.K243K 0.27 TCGA-BF-AAOX-01 6 12294300 12294300 G A EDN1 Nonsense_Mutation p.W120* 0.28 TCGA-BF-AAOX-01 6 127469815 127469815 C T RSPO3 Silent p.G40G 0.33 TCGA-BF-AAOX-01 6 129921865 129921865 T A ARHGAP18 Missense_Mutation p.E498D 0.28 tolerated(0.46) benign(0.022) TCGA-BF-AAOX-01 6 130164736 130164736 C A TMEM244 Missense_Mutation p.L44F 0.40 tolerated(0.67) probably_damaging(0.999) TCGA-BF-AAOX-01 6 130762616 130762616 C T TMEM200A Missense_Mutation p.S350F 0.22 deleterious(0.02) possibly_damaging(0.451) TCGA-BF-AAOX-01 6 132619082 132619082 G A MOXD1 Silent p.F507F 0.28 TCGA-BF-AAOX-01 6 133070916 133070916 G A VNN2 Missense_Mutation p.S430F 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAOX-01 6 134327999 134327999 C T SLC2A12 Missense_Mutation p.M506I 0.34 tolerated(0.2) possibly_damaging(0.823) TCGA-BF-AAOX-01 6 135239594 135239594 C T ALDH8A1 Missense_Mutation p.D475N 0.44 tolerated(0.25) benign(0.033) TCGA-BF-AAOX-01 6 135265077 135265077 C T ALDH8A1 Missense_Mutation p.E56K 0.28 tolerated(0.96) benign(0.003) TCGA-BF-AAOX-01 6 135521267 135521267 C T MYB Missense_Mutation p.P585L 0.31 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 6 136687000 136687000 C T MAP7 Silent p.K404K 0.30 TCGA-BF-AAOX-01 6 136687086 136687086 C T MAP7 Missense_Mutation p.V376I 0.28 tolerated(0.43) benign(0.05) TCGA-BF-AAOX-01 6 136913430 136913430 C T MAP3K5 Missense_Mutation p.E1036K 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-BF-AAOX-01 6 142399799 142399799 G A NMBR Missense_Mutation p.L222F 0.26 deleterious(0.01) possibly_damaging(0.907) TCGA-BF-AAOX-01 6 144269256 144269256 G A PLAGL1 Silent p.C6C 0.36 TCGA-BF-AAOX-01 6 151687617 151687617 G A ZBTB2 Missense_Mutation p.S195L 0.51 tolerated(0.29) benign(0.003) TCGA-BF-AAOX-01 6 155154098 155154098 C T SCAF8 Nonsense_Mutation p.R1129* 0.34 TCGA-BF-AAOX-01 6 155469399 155469399 G A TIAM2 Missense_Mutation p.M653I 0.40 deleterious(0) probably_damaging(0.95) TCGA-BF-AAOX-01 6 157528682 157528682 C T ARID1B Missense_Mutation p.S2136L 0.35 probably_damaging(0.988) TCGA-BF-AAOX-01 6 158342645 158342645 C T SNX9 Silent p.I344I 0.26 TCGA-BF-AAOX-01 6 158502282 158502282 G A SYNJ2 Silent p.E903E 0.23 TCGA-BF-AAOX-01 6 160553318 160553318 C T SLC22A1 Silent p.G190G 0.11 TCGA-BF-AAOX-01 6 160663379 160663379 C T SLC22A2 Missense_Mutation p.M445I 0.26 tolerated(0.54) benign(0.006) TCGA-BF-AAOX-01 6 160679405 160679405 C T SLC22A2 Missense_Mutation p.E129K 0.31 tolerated(0.06) benign(0.108) TCGA-BF-AAOX-01 6 161159575 161159575 G A PLG Missense_Mutation p.G603E 0.21 deleterious(0.04) benign(0.154) TCGA-BF-AAOX-01 6 161469764 161469764 G A MAP3K4 Missense_Mutation p.E154K 0.34 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 6 162683583 162683583 T A PARK2 Missense_Mutation p.K129M 0.33 tolerated(0.1) benign(0.044) TCGA-BF-AAOX-01 6 163483346 163483346 G A PACRG Silent p.P152P 0.42 TCGA-BF-AAOX-01 6 17628957 17628957 G A NUP153 Missense_Mutation p.P1158L 0.29 deleterious(0) possibly_damaging(0.616) TCGA-BF-AAOX-01 6 22570050 22570050 C T HDGFL1 Silent p.I82I 0.32 TCGA-BF-AAOX-01 6 25819957 25819957 C T SLC17A1 Missense_Mutation p.G132R 0.22 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 6 25820018 25820018 A T SLC17A1 Silent p.I111I 0.30 TCGA-BF-AAOX-01 6 27223109 27223109 C T PRSS16 3'UTR 0.42 TCGA-BF-AAOX-01 6 27879603 27879603 C A OR2B2 Missense_Mutation p.K165N 0.21 tolerated(0.14) benign(0.158) TCGA-BF-AAOX-01 6 27879604 27879604 T A OR2B2 Missense_Mutation p.K165M 0.22 tolerated(0.06) benign(0.012) TCGA-BF-AAOX-01 6 28499575 28499575 G A GPX5 Missense_Mutation p.E88K 0.26 tolerated(0.09) benign(0.25) TCGA-BF-AAOX-01 6 28543162 28543162 C T SCAND3 Silent p.R440R 0.25 TCGA-BF-AAOX-01 6 28543563 28543563 A G SCAND3 Silent p.L307L 0.22 TCGA-BF-AAOX-01 6 28543779 28543779 C T SCAND3 Missense_Mutation p.E235K 0.24 tolerated_low_confidence(0.05) benign(0.274) TCGA-BF-AAOX-01 6 29079701 29079701 G A OR2J3 Missense_Mutation p.E12K 0.17 tolerated(0.4) benign(0.139) TCGA-BF-AAOX-01 6 29080598 29080598 G A OR2J3 Missense_Mutation p.E311K 0.26 tolerated(0.51) benign(0.024) TCGA-BF-AAOX-01 6 29142171 29142171 C T OR2J2 Silent p.F253F 0.22 TCGA-BF-AAOX-01 6 29365345 29365345 C T OR12D2 Missense_Mutation p.T290I 0.30 deleterious(0.01) possibly_damaging(0.774) TCGA-BF-AAOX-01 6 29408357 29408357 G A OR10C1 Missense_Mutation p.G189R 0.49 deleterious(0.03) benign(0.401) TCGA-BF-AAOX-01 6 29524119 29524119 G A UBD Silent p.V12V 0.16 TCGA-BF-AAOX-01 6 29639258 29639258 G A MOG 3'UTR 0.22 TCGA-BF-AAOX-01 6 29640787 29640787 C T ZFP57 Silent p.Q367Q 0.24 TCGA-BF-AAOX-01 6 30166293 30166293 G A TRIM26 Silent p.I149I 0.19 TCGA-BF-AAOX-01 6 30615120 30615120 G A C6orf136 Missense_Mutation p.E38K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-BF-AAOX-01 6 31583483 31583483 G A AIF1 Missense_Mutation p.D42N 0.59 tolerated(0.3) benign(0.007) TCGA-BF-AAOX-01 6 31646937 31646937 C T LY6G5C Missense_Mutation p.G77E 0.22 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 6 31896692 31896692 G A CFB Intron 0.12 TCGA-BF-AAOX-01 6 32012792 32012792 C T TNXB Missense_Mutation p.G69S 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-BF-AAOX-01 6 32047001 32047001 G A RNA5SP206 5'Flank 0.19 TCGA-BF-AAOX-01 6 32548563 32548563 G A HLA-DRB1 Silent p.F241F 0.19 TCGA-BF-AAOX-01 6 35210499 35210499 A T SCUBE3 Missense_Mutation p.K545N 0.18 deleterious(0.03) benign(0.179) TCGA-BF-AAOX-01 6 36990038 36990038 C T FGD2 Silent p.L450L 0.27 TCGA-BF-AAOX-01 6 36990039 36990039 C T FGD2 Missense_Mutation p.R451W 0.29 deleterious(0.01) benign(0.15) TCGA-BF-AAOX-01 6 37441316 37441316 C T CMTR1 Missense_Mutation p.P587L 0.35 tolerated(0.26) benign(0.035) TCGA-BF-AAOX-01 6 38705606 38705606 G A DNAH8 Missense_Mutation p.G108E 0.36 benign(0.013) TCGA-BF-AAOX-01 6 38729524 38729524 G A DNAH8 Missense_Mutation p.G304E 0.27 benign(0.438) TCGA-BF-AAOX-01 6 38863945 38863945 C T DNAH8 Missense_Mutation p.P2745S 0.33 benign(0.094) TCGA-BF-AAOX-01 6 39162369 39162369 C T KCNK5 Splice_Site p.X155_splice 0.27 TCGA-BF-AAOX-01 6 39162370 39162370 C T KCNK5 Silent p.L155L 0.29 TCGA-BF-AAOX-01 6 39873994 39873994 G A MOCS1 3'UTR 0.50 TCGA-BF-AAOX-01 6 40399472 40399472 C T LRFN2 Missense_Mutation p.D461N 0.36 deleterious(0) probably_damaging(0.989) TCGA-BF-AAOX-01 6 41011395 41011395 G A TSPO2 Nonsense_Mutation p.W91* 0.26 TCGA-BF-AAOX-01 6 42200428 42200428 T A TRERF1 Missense_Mutation p.E1090V 0.41 tolerated(0.12) benign(0) TCGA-BF-AAOX-01 6 42227264 42227264 C T TRERF1 Silent p.G694G 0.23 TCGA-BF-AAOX-01 6 43222338 43222338 G A TTBK1 Silent p.L175L 0.29 TCGA-BF-AAOX-01 6 46521504 46521504 C T CYP39A1 Silent p.Q446Q 0.33 TCGA-BF-AAOX-01 6 47976515 47976515 C T PTCHD4 Missense_Mutation p.M254I 0.20 tolerated(0.08) possibly_damaging(0.844) TCGA-BF-AAOX-01 6 52656588 52656591 AAGT - GSTA1 3'UTR 0.38 TCGA-BF-AAOX-01 6 56044896 56044896 G A COL21A1 Silent p.F40F 0.23 TCGA-BF-AAOX-01 6 57467154 57467154 C T PRIM2 3'UTR 0.08 TCGA-BF-AAOX-01 6 64422757 64422757 C T PHF3 Missense_Mutation p.S1758L 0.40 tolerated(0.37) benign(0.001) TCGA-BF-AAOX-01 6 66204748 66204748 G A EYS Missense_Mutation p.H186Y 0.28 tolerated(0.29) benign(0.064) TCGA-BF-AAOX-01 6 69703735 69703735 G A BAI3 Missense_Mutation p.D604N 0.38 tolerated(0.06) benign(0.022) TCGA-BF-AAOX-01 6 74072440 74072440 G A KHDC3L 5'UTR 0.30 TCGA-BF-AAOX-01 6 7580659 7580659 G A DSP Silent p.L1412L 0.17 TCGA-BF-AAOX-01 6 84371220 84371220 C T SNAP91 Splice_Site p.X151_splice 0.31 TCGA-BF-AAOX-01 6 85466429 85466429 T C TBX18 Missense_Mutation p.D253G 0.33 deleterious(0) probably_damaging(0.998) TCGA-BF-AAOX-01 6 87968063 87968063 G A ZNF292 Silent p.T1572T 0.39 TCGA-BF-AAOX-01 6 89907759 89907759 C T GABRR1 Silent p.G184G 0.33 TCGA-BF-AAOX-01 6 97247681 97247681 C T GPR63 5'UTR 0.36 TCGA-BF-AAOX-01 6 97562253 97562253 G A KLHL32 Missense_Mutation p.E408K 0.52 tolerated(0.72) probably_damaging(0.998) TCGA-BF-AAOX-01 6 99771425 99771425 C T FAXC Missense_Mutation p.G240R 0.29 tolerated(0.58) benign(0.017) TCGA-BF-AAOX-01 7 100086544 100086544 G A NYAP1 Silent p.S400S 0.28 TCGA-BF-AAOX-01 7 100172796 100172796 G A LRCH4 Silent p.F662F 0.26 TCGA-BF-AAOX-01 7 100176395 100176395 G A LRCH4 Missense_Mutation p.P205S 0.10 deleterious(0) possibly_damaging(0.566) TCGA-BF-AAOX-01 7 100176396 100176396 G A LRCH4 Silent p.L204L 0.11 TCGA-BF-AAOX-01 7 100551989 100551989 C T MUC3A Missense_Mutation p.P247L 0.14 tolerated(1) benign(0.008) TCGA-BF-AAOX-01 7 101845476 101845476 G A CUX1 Missense_Mutation p.G978R 0.29 deleterious(0) unknown(0) TCGA-BF-AAOX-01 7 103294590 103294590 C T RELN Missense_Mutation p.G502R 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAOX-01 7 106509918 106509918 G A PIK3CG Missense_Mutation p.E638K 0.31 tolerated(0.2) benign(0.021) TCGA-BF-AAOX-01 7 107434843 107434843 G A SLC26A3 Missense_Mutation p.H38Y 0.27 deleterious(0.01) possibly_damaging(0.71) TCGA-BF-AAOX-01 7 107571830 107571830 A G LAMB1 Missense_Mutation p.L1503P 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 7 107599719 107599719 A T LAMB1 Missense_Mutation p.Y889N 0.25 tolerated(0.4) benign(0.219) TCGA-BF-AAOX-01 7 108524201 108524201 G A C7orf66 Missense_Mutation p.R71C 0.22 tolerated_low_confidence(0.13) benign(0.038) TCGA-BF-AAOX-01 7 112424214 112424214 G A TMEM168 Missense_Mutation p.P223S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAOX-01 7 113519816 113519816 G A PPP1R3A Missense_Mutation p.P444L 0.37 deleterious(0.04) benign(0.263) TCGA-BF-AAOX-01 7 116862070 116862070 T C ST7 Missense_Mutation p.L531P 0.38 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 7 120965481 120965481 C T WNT16 5'Flank 0.28 TCGA-BF-AAOX-01 7 122339011 122339011 G A RNF133 5'UTR 0.23 TCGA-BF-AAOX-01 7 122759296 122759296 C T SLC13A1 Missense_Mutation p.E451K 0.27 tolerated(0.82) benign(0.297) TCGA-BF-AAOX-01 7 122808466 122808466 C T SLC13A1 Missense_Mutation p.D208N 0.25 tolerated(0.29) benign(0.007) TCGA-BF-AAOX-01 7 123599953 123599953 C T SPAM1 Missense_Mutation p.S487F 0.42 deleterious_low_confidence(0.02) benign(0.001) TCGA-BF-AAOX-01 7 131817859 131817859 G A PLXNA4 Silent p.T1846T 0.39 TCGA-BF-AAOX-01 7 134223684 134223684 C T AKR1B10 Intron 0.35 TCGA-BF-AAOX-01 7 134254177 134254177 T G AKR1B15 Missense_Mutation p.F111V 0.36 deleterious(0.02) possibly_damaging(0.887) TCGA-BF-AAOX-01 7 137266601 137266601 G A DGKI Missense_Mutation p.S546F 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 7 137773477 137773477 G A AKR1D1 Missense_Mutation p.G75E 0.36 deleterious(0.01) possibly_damaging(0.618) TCGA-BF-AAOX-01 7 139746784 139746784 G A PARP12 Missense_Mutation p.H296Y 0.34 deleterious(0.01) benign(0.261) TCGA-BF-AAOX-01 7 141539248 141539248 C T PRSS37 Silent p.Q22Q 0.21 TCGA-BF-AAOX-01 7 141672805 141672805 C T TAS2R38 Missense_Mutation p.V229I 0.21 tolerated(0.06) benign(0.161) TCGA-BF-AAOX-01 7 141672806 141672806 C T TAS2R38 Silent p.K228K 0.22 TCGA-BF-AAOX-01 7 141727497 141727497 G A MGAM Missense_Mutation p.E395K 0.25 tolerated(0.24) benign(0.003) TCGA-BF-AAOX-01 7 141734489 141734489 C T MGAM Missense_Mutation p.P603S 0.35 tolerated(0.13) benign(0.116) TCGA-BF-AAOX-01 7 141754627 141754627 C T MGAM Missense_Mutation p.P1078L 0.34 tolerated(0.53) benign(0.015) TCGA-BF-AAOX-01 7 141799419 141799419 G A MGAM Missense_Mutation p.D1690N 0.29 tolerated(0.13) benign(0.012) TCGA-BF-AAOX-01 7 142008696 142008696 G A TRBV3-1 Missense_Mutation p.D57N 0.26 tolerated(0.5) benign(0.145) TCGA-BF-AAOX-01 7 142013020 142013020 C T TRBV4-1 5'UTR 0.33 TCGA-BF-AAOX-01 7 142104226 142104226 G A TRBV6-9 Missense_Mutation p.P80L 0.29 deleterious(0.02) benign(0.141) TCGA-BF-AAOX-01 7 142223873 142223873 G A TRBV11-1 Silent p.I98I 0.19 TCGA-BF-AAOX-01 7 142326503 142326503 G A TRBV19 5'UTR 0.21 TCGA-BF-AAOX-01 7 142499057 142499057 G A TRBC2 Missense_Mutation p.D112N 0.16 tolerated(0.46) benign(0.001) TCGA-BF-AAOX-01 7 142658136 142658136 C T KEL Silent p.G93G 0.35 TCGA-BF-AAOX-01 7 142749945 142749945 G A OR6V1 Missense_Mutation p.D170N 0.35 tolerated(1) benign(0.002) TCGA-BF-AAOX-01 7 142832342 142832342 G A PIP Missense_Mutation p.E51K 0.42 deleterious(0) possibly_damaging(0.703) TCGA-BF-AAOX-01 7 143053927 143053927 G A FAM131B Nonsense_Mutation p.Q267* 0.31 TCGA-BF-AAOX-01 7 143053928 143053928 G A FAM131B Silent p.S266S 0.32 TCGA-BF-AAOX-01 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.35 deleterious(0.03) benign(0.003) TCGA-BF-AAOX-01 7 144015337 144015337 G A OR2A1 Silent p.G40G 0.20 TCGA-BF-AAOX-01 7 146741021 146741021 C T CNTNAP2 Missense_Mutation p.S142F 0.34 deleterious(0) possibly_damaging(0.781) TCGA-BF-AAOX-01 7 149418543 149418543 C T KRBA1 Missense_Mutation p.P128L 0.45 tolerated(0.11) benign(0.168) TCGA-BF-AAOX-01 7 149475038 149475038 C T ZNF467 5'Flank 0.40 TCGA-BF-AAOX-01 7 150217337 150217337 C T GIMAP7 Missense_Mutation p.P92L 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 7 150390086 150390086 G A GIMAP2 Missense_Mutation p.E238K 0.28 tolerated(0.9) benign(0.001) TCGA-BF-AAOX-01 7 150554351 150554351 G A AOC1 Missense_Mutation p.D265N 0.44 tolerated(0.18) benign(0.005) TCGA-BF-AAOX-01 7 151818757 151818757 G A GALNT11 Missense_Mutation p.G608S 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-BF-AAOX-01 7 156521401 156521401 C T LMBR1 Silent p.K284K 0.34 TCGA-BF-AAOX-01 7 18767252 18767252 C T HDAC9 Missense_Mutation p.P594L 0.40 tolerated(0.17) benign(0.023) TCGA-BF-AAOX-01 7 21742349 21742349 C T DNAH11 Missense_Mutation p.R2075C 0.33 probably_damaging(1) TCGA-BF-AAOX-01 7 28996281 28996281 C T AC005013.5 5'Flank 0.45 TCGA-BF-AAOX-01 7 31904629 31904629 G A PDE1C Missense_Mutation p.P286L 0.33 deleterious(0.01) probably_damaging(1) TCGA-BF-AAOX-01 7 34094912 34094912 C T BMPER Silent p.F308F 0.32 TCGA-BF-AAOX-01 7 34097674 34097674 G A BMPER Missense_Mutation p.G311R 0.32 tolerated(0.17) probably_damaging(0.957) TCGA-BF-AAOX-01 7 37283994 37283994 C T ELMO1 Missense_Mutation p.R139Q 0.28 tolerated(0.24) benign(0.093) TCGA-BF-AAOX-01 7 37901676 37901676 T G NME8 Missense_Mutation p.V106G 0.33 deleterious(0) probably_damaging(0.968) TCGA-BF-AAOX-01 7 4185493 4185493 G A SDK1 Silent p.T1456T 0.33 TCGA-BF-AAOX-01 7 43483965 43483965 G A HECW1 Silent p.E398E 0.42 TCGA-BF-AAOX-01 7 45077941 45077941 C T CCM2 Silent p.R61R 0.33 TCGA-BF-AAOX-01 7 45650076 45650076 C T ADCY1 Silent p.I296I 0.32 TCGA-BF-AAOX-01 7 45957021 45957021 C T IGFBP3 Missense_Mutation p.E147K 0.38 deleterious(0.03) possibly_damaging(0.889) TCGA-BF-AAOX-01 7 45957022 45957022 C T IGFBP3 Silent p.S146S 0.38 TCGA-BF-AAOX-01 7 47884648 47884648 G A PKD1L1 Silent p.L1728L 0.37 TCGA-BF-AAOX-01 7 48352720 48352720 C T ABCA13 Silent p.S3191S 0.28 TCGA-BF-AAOX-01 7 50057909 50057909 G A ZPBP Missense_Mutation p.S237L 0.26 deleterious(0.02) benign(0.438) TCGA-BF-AAOX-01 7 5036425 5036425 C T RNF216P1 RNA 0.34 TCGA-BF-AAOX-01 7 54617842 54617842 C T VSTM2A Missense_Mutation p.P205S 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-BF-AAOX-01 7 62752599 62752599 C T ZNF733P RNA 0.29 TCGA-BF-AAOX-01 7 64452303 64452303 A T ERV3-1 Missense_Mutation p.Y368N 0.36 deleterious(0) probably_damaging(0.982) TCGA-BF-AAOX-01 7 70255658 70255658 G A AUTS2 Silent p.R1152R 0.28 TCGA-BF-AAOX-01 7 70880922 70880922 G A WBSCR17 Missense_Mutation p.G213R 0.25 deleterious(0.03) possibly_damaging(0.897) TCGA-BF-AAOX-01 7 71571191 71571191 C T CALN1 Silent p.G111G 0.27 TCGA-BF-AAOX-01 7 72159743 72159743 G A MIR4650-2 5'Flank 0.30 TCGA-BF-AAOX-01 7 77789468 77789468 G A MAGI2 Missense_Mutation p.P907S 0.34 tolerated(0.17) benign(0.021) TCGA-BF-AAOX-01 7 81593608 81593608 G A CACNA2D1 Missense_Mutation p.A881V 0.39 tolerated(0.14) possibly_damaging(0.546) TCGA-BF-AAOX-01 7 81600076 81600076 G A CACNA2D1 Intron 0.36 TCGA-BF-AAOX-01 7 81620534 81620534 T C CACNA2D1 Missense_Mutation p.Y588C 0.22 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 7 82451775 82451775 A G PCLO Intron 0.22 TCGA-BF-AAOX-01 7 82457265 82457265 C T PCLO Missense_Mutation p.R4756K 0.22 unknown(0) TCGA-BF-AAOX-01 7 82474586 82474586 C T PCLO Splice_Site p.X4682_splice 0.32 TCGA-BF-AAOX-01 7 82545811 82545811 G A PCLO Missense_Mutation p.R3831C 0.30 unknown(0) TCGA-BF-AAOX-01 7 86526824 86526824 G A KIAA1324L Nonsense_Mutation p.Q895* 0.46 TCGA-BF-AAOX-01 7 87195485 87195485 G A ABCB1 Silent p.F201F 0.25 TCGA-BF-AAOX-01 7 89749029 89749029 G A RP5-1121E10.2 Intron 0.43 TCGA-BF-AAOX-01 7 92140332 92140332 G A PEX1 Missense_Mutation p.H505Y 0.41 deleterious(0.01) benign(0.163) TCGA-BF-AAOX-01 7 94034019 94034019 C T COL1A2 Silent p.F113F 0.31 TCGA-BF-AAOX-01 7 94055073 94055073 T C COL1A2 Silent p.G949G 0.33 TCGA-BF-AAOX-01 7 96653682 96653682 C T DLX5 Missense_Mutation p.G85E 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-BF-AAOX-01 7 99273748 99273748 G A CYP3A5 Missense_Mutation p.S52F 0.18 tolerated(0.07) benign(0.195) TCGA-BF-AAOX-01 7 99377637 99377637 C T CYP3A4 Missense_Mutation p.G48E 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 7 99818824 99818824 C T PVRIG Missense_Mutation p.P311S 0.38 tolerated(0.29) benign(0.154) TCGA-BF-AAOX-01 8 100168914 100168914 C T VPS13B Silent p.S717S 0.30 TCGA-BF-AAOX-01 8 100654075 100654075 G A VPS13B Missense_Mutation p.D1778N 0.23 tolerated(0.06) probably_damaging(0.956) TCGA-BF-AAOX-01 8 100866227 100866227 C T VPS13B Missense_Mutation p.S3562F 0.28 tolerated(0.07) possibly_damaging(0.485) TCGA-BF-AAOX-01 8 101075699 101075699 G C RGS22 Missense_Mutation p.L433V 0.29 deleterious(0) probably_damaging(0.987) TCGA-BF-AAOX-01 8 106813300 106813300 C T ZFPM2 Silent p.P330P 0.56 TCGA-BF-AAOX-01 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAOX-01 8 110374882 110374882 G A PKHD1L1 Missense_Mutation p.D25N 0.23 tolerated(0.35) benign(0.118) TCGA-BF-AAOX-01 8 110631199 110631199 G T SYBU Missense_Mutation p.P100H 0.25 deleterious(0) probably_damaging(0.956) TCGA-BF-AAOX-01 8 113599442 113599442 C T CSMD3 Silent p.T1246T 0.19 TCGA-BF-AAOX-01 8 121228621 121228621 C T COL14A1 Silent p.I543I 0.48 TCGA-BF-AAOX-01 8 121383504 121383504 G A COL14A1 3'UTR 0.25 TCGA-BF-AAOX-01 8 124413058 124413058 G A ATAD2 5'Flank 0.36 TCGA-BF-AAOX-01 8 124796713 124796713 C T FAM91A1 Missense_Mutation p.P236L 0.30 deleterious(0) probably_damaging(0.909) TCGA-BF-AAOX-01 8 125058037 125058037 G A FER1L6 Nonsense_Mutation p.W873* 0.26 TCGA-BF-AAOX-01 8 125072807 125072807 C T FER1L6 Missense_Mutation p.R1002W 0.59 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 8 12600737 12600737 T G LONRF1 Missense_Mutation p.Q259P 0.28 deleterious(0.01) benign(0.167) TCGA-BF-AAOX-01 8 126095979 126095979 G A KIAA0196 Silent p.I54I 0.56 TCGA-BF-AAOX-01 8 140631257 140631257 G A KCNK9 Silent p.V123V 0.25 TCGA-BF-AAOX-01 8 144801653 144801653 G A MAPK15 Splice_Site p.X241_splice 0.45 TCGA-BF-AAOX-01 8 144804247 144804247 C T MAPK15 Silent p.V487V 0.27 TCGA-BF-AAOX-01 8 144941528 144941528 C T EPPK1 Missense_Mutation p.R1965Q 0.20 benign(0.009) TCGA-BF-AAOX-01 8 145094829 145094829 C T SPATC1 Silent p.S77S 0.50 TCGA-BF-AAOX-01 8 145110001 145110001 C T OPLAH Silent p.G780G 0.21 TCGA-BF-AAOX-01 8 145649145 145649145 G C VPS28 3'UTR 0.30 TCGA-BF-AAOX-01 8 145749434 145749434 G A LRRC14 3'UTR 0.19 TCGA-BF-AAOX-01 8 16961950 16961950 C T MICU3 Silent p.H345H 0.38 TCGA-BF-AAOX-01 8 1808290 1808290 C T ARHGEF10 Missense_Mutation p.L141F 0.50 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-BF-AAOX-01 8 23225805 23225805 G A LOXL2 Silent p.S20S 0.23 TCGA-BF-AAOX-01 8 24250807 24250807 G A ADAMDEC1 Missense_Mutation p.M80I 0.36 tolerated(1) benign(0.001) TCGA-BF-AAOX-01 8 25718686 25718686 C T EBF2 Silent p.R407R 0.37 TCGA-BF-AAOX-01 8 26722286 26722286 G A ADRA1A Silent p.N67N 0.31 TCGA-BF-AAOX-01 8 27097680 27097680 C T STMN4 Splice_Site p.X134_splice 0.36 TCGA-BF-AAOX-01 8 3038693 3038693 G A CSMD1 Silent p.L1888L 0.33 TCGA-BF-AAOX-01 8 3224673 3224673 A G CSMD1 Missense_Mutation p.L999P 0.37 probably_damaging(1) TCGA-BF-AAOX-01 8 32620834 32620834 C T NRG1 Intron 0.35 TCGA-BF-AAOX-01 8 32621551 32621551 G A NRG1 Silent p.R523R 0.31 TCGA-BF-AAOX-01 8 37727910 37727910 G A RAB11FIP1 Intron 0.40 TCGA-BF-AAOX-01 8 38027366 38027366 C T LSM1 Missense_Mutation p.G62E 0.29 deleterious(0) probably_damaging(0.992) TCGA-BF-AAOX-01 8 38808408 38808408 T C PLEKHA2 Missense_Mutation p.L129P 0.18 tolerated(0.32) benign(0.177) TCGA-BF-AAOX-01 8 3889479 3889479 G A CSMD1 Silent p.I186I 0.29 TCGA-BF-AAOX-01 8 39550149 39550149 C T ADAM18 Missense_Mutation p.H618Y 0.38 tolerated(0.36) benign(0.242) TCGA-BF-AAOX-01 8 39785653 39785653 C T IDO1 Silent p.F387F 0.54 TCGA-BF-AAOX-01 8 39792556 39792556 C T IDO2 5'UTR 0.38 TCGA-BF-AAOX-01 8 41547860 41547860 C T ANK1 Missense_Mutation p.R1371K 0.25 tolerated(0.12) benign(0.06) TCGA-BF-AAOX-01 8 43159898 43159898 G A RNU6-104P 3'Flank 0.38 TCGA-BF-AAOX-01 8 48868468 48868468 T C PRKDC Missense_Mutation p.K122R 0.36 benign(0.331) TCGA-BF-AAOX-01 8 52321598 52321598 G A PXDNL Silent p.F862F 0.30 TCGA-BF-AAOX-01 8 55540765 55540765 A G RP1 Silent p.E1441E 0.20 TCGA-BF-AAOX-01 8 56015417 56015417 C T XKR4 Silent p.F123F 0.27 TCGA-BF-AAOX-01 8 57228910 57228910 C T SDR16C5 5'UTR 0.17 TCGA-BF-AAOX-01 8 59059479 59059479 C T FAM110B Silent p.I230I 0.21 TCGA-BF-AAOX-01 8 66963819 66963819 C T DNAJC5B Silent p.L13L 0.55 TCGA-BF-AAOX-01 8 68956764 68956764 C T PREX2 Silent p.Y294Y 0.23 TCGA-BF-AAOX-01 8 69050695 69050695 G A PREX2 Missense_Mutation p.D1344N 0.45 deleterious(0) probably_damaging(0.989) TCGA-BF-AAOX-01 8 70744372 70744372 C T SLCO5A1 Silent p.L179L 0.12 TCGA-BF-AAOX-01 8 73849511 73849511 G A KCNB2 Missense_Mutation p.E641K 0.14 tolerated_low_confidence(0.49) benign(0.111) TCGA-BF-AAOX-01 8 74922361 74922361 G A LY96 Missense_Mutation p.G110R 0.17 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 8 77616281 77616281 C T ZFHX4 5'UTR 0.42 TCGA-BF-AAOX-01 8 77766851 77766851 C T ZFHX4 Missense_Mutation p.S2565F 0.53 benign(0.113) TCGA-BF-AAOX-01 8 86358402 86358402 C T CA3 Missense_Mutation p.P180L 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 8 87076635 87076635 C T PSKH2 Missense_Mutation p.M137I 0.36 deleterious(0.01) possibly_damaging(0.876) TCGA-BF-AAOX-01 8 87229822 87229822 G A SLC7A13 Silent p.I352I 0.17 TCGA-BF-AAOX-01 8 87738766 87738766 G A CNGB3 Missense_Mutation p.P111S 0.24 tolerated(0.39) benign(0.05) TCGA-BF-AAOX-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.23 deleterious(0.02) possibly_damaging(0.887) TCGA-BF-AAOX-01 8 94815888 94815888 C T TMEM67 Silent p.F766F 0.48 TCGA-BF-AAOX-01 8 95264249 95264249 G A GEM Missense_Mutation p.S204L 0.27 deleterious(0) benign(0.214) TCGA-BF-AAOX-01 8 99042724 99042724 C T MATN2 Silent p.A797A 0.26 TCGA-BF-AAOX-01 9 104433230 104433230 C T GRIN3A Silent p.K488K 0.33 TCGA-BF-AAOX-01 9 107267490 107267490 C T OR13F1 Missense_Mutation p.S316F 0.28 tolerated_low_confidence(0.17) possibly_damaging(0.564) TCGA-BF-AAOX-01 9 107298436 107298436 G A OR13C3 Missense_Mutation p.A220V 0.31 tolerated(0.19) benign(0.12) TCGA-BF-AAOX-01 9 107299092 107299092 C T OR13C3 Translation_Start_Site p.M1? 0.17 benign(0) TCGA-BF-AAOX-01 9 107331675 107331675 C T OR13C8 Missense_Mutation p.S76F 0.32 deleterious(0.01) benign(0.01) TCGA-BF-AAOX-01 9 109690265 109690265 C T ZNF462 Missense_Mutation p.P1358S 0.21 possibly_damaging(0.643) TCGA-BF-AAOX-01 9 113208240 113208240 G A SVEP1 Missense_Mutation p.S1447F 0.23 possibly_damaging(0.701) TCGA-BF-AAOX-01 9 113431158 113431158 T A MUSK 5'UTR 0.47 TCGA-BF-AAOX-01 9 114453973 114453973 C T C9orf84 Silent p.L1364L 0.35 TCGA-BF-AAOX-01 9 117004500 117004500 C T COL27A1 Missense_Mutation p.P957S 0.50 unknown(0) TCGA-BF-AAOX-01 9 117004501 117004501 C T COL27A1 Missense_Mutation p.P957L 0.50 unknown(0) TCGA-BF-AAOX-01 9 119109438 119109438 C T PAPPA Missense_Mutation p.T1305I 0.23 deleterious(0.03) possibly_damaging(0.803) TCGA-BF-AAOX-01 9 119115125 119115125 G A PAPPA Missense_Mutation p.V1369M 0.35 deleterious(0) possibly_damaging(0.86) TCGA-BF-AAOX-01 9 123742378 123742378 C G C5 Missense_Mutation p.R1214T 0.32 deleterious(0.01) benign(0.134) TCGA-BF-AAOX-01 9 124855613 124855613 G A TTLL11 Missense_Mutation p.L29F 0.36 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BF-AAOX-01 9 125239563 125239563 G A OR1J1 Silent p.L215L 0.34 TCGA-BF-AAOX-01 9 125289420 125289420 C A OR1N1 Silent p.L51L 0.31 TCGA-BF-AAOX-01 9 125563334 125563334 C T OR1K1 Silent p.I311I 0.23 TCGA-BF-AAOX-01 9 12702369 12702369 G A TYRP1 Missense_Mutation p.E338K 0.32 tolerated(0.06) possibly_damaging(0.803) TCGA-BF-AAOX-01 9 131353845 131353845 G A SPTAN1 Silent p.R1032R 0.33 TCGA-BF-AAOX-01 9 13136143 13136143 C T MPDZ Missense_Mutation p.G1444E 0.24 tolerated(0.23) possibly_damaging(0.726) TCGA-BF-AAOX-01 9 131568164 131568164 C T TBC1D13 Silent p.F315F 0.41 TCGA-BF-AAOX-01 9 131865314 131865314 C T CRAT Missense_Mutation p.D148N 0.28 deleterious(0.03) benign(0.061) TCGA-BF-AAOX-01 9 136131142 136131142 C T RP11-430N14.4 5'Flank 0.33 TCGA-BF-AAOX-01 9 137019633 137019633 G A WDR5 Missense_Mutation p.G226D 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 9 139310733 139310733 T C PMPCA Intron 0.33 TCGA-BF-AAOX-01 9 139350116 139350116 G A SEC16A Silent p.L1932L 0.29 TCGA-BF-AAOX-01 9 139370147 139370147 G A SEC16A Missense_Mutation p.R641C 0.33 tolerated(0.25) benign(0.004) TCGA-BF-AAOX-01 9 139878140 139878140 C T LCNL1 Silent p.A34A 0.21 TCGA-BF-AAOX-01 9 139929510 139929510 C T C9orf139 3'UTR 0.30 TCGA-BF-AAOX-01 9 140109865 140109865 C T NDOR1 Missense_Mutation p.P394S 0.27 deleterious(0) probably_damaging(0.982) TCGA-BF-AAOX-01 9 14722278 14722278 C T CER1 Silent p.K131K 0.30 TCGA-BF-AAOX-01 9 14747031 14747031 G A FREM1 Missense_Mutation p.P2010S 0.41 tolerated(0.07) benign(0.034) TCGA-BF-AAOX-01 9 14784484 14784484 G A FREM1 Silent p.I1442I 0.29 TCGA-BF-AAOX-01 9 15190649 15190649 G A TTC39B Silent p.L336L 0.36 TCGA-BF-AAOX-01 9 17457533 17457533 G A CNTLN Silent p.L1042L 0.38 TCGA-BF-AAOX-01 9 17793432 17793432 C T SH3GL2 Missense_Mutation p.P266S 0.29 tolerated(0.65) benign(0) TCGA-BF-AAOX-01 9 17795769 17795769 C T SH3GL2 3'UTR 0.43 TCGA-BF-AAOX-01 9 27209208 27209208 T C TEK Silent p.L889L 0.27 TCGA-BF-AAOX-01 9 27229316 27229316 G A TEK 3'UTR 0.48 TCGA-BF-AAOX-01 9 27948840 27948840 G A LINGO2 3'UTR 0.35 TCGA-BF-AAOX-01 9 27949854 27949854 C T LINGO2 Silent p.L272L 0.34 TCGA-BF-AAOX-01 9 33798051 33798051 C T PRSS3 Missense_Mutation p.S199F 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-AAOX-01 9 35093525 35093525 G A PIGO Missense_Mutation p.H278Y 0.54 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 9 379899 379899 C T DOCK8 Missense_Mutation p.R857C 0.34 tolerated(0.07) benign(0.189) TCGA-BF-AAOX-01 9 43624780 43624780 G A SPATA31A6 Nonsense_Mutation p.Q1303* 0.23 TCGA-BF-AAOX-01 9 43627314 43627314 C T SPATA31A6 Missense_Mutation p.R458K 0.28 deleterious(0.04) benign(0.146) TCGA-BF-AAOX-01 9 5089835 5089835 A G JAK2 Silent p.V911V 0.33 TCGA-BF-AAOX-01 9 6980982 6980982 C T KDM4C Nonsense_Mutation p.Q327* 0.25 TCGA-BF-AAOX-01 9 72131224 72131224 C T APBA1 Silent p.E301E 0.36 TCGA-BF-AAOX-01 9 72727983 72727983 G A MAMDC2 Missense_Mutation p.G193E 0.37 deleterious(0) probably_damaging(0.959) TCGA-BF-AAOX-01 9 74863197 74863197 G A GDA Missense_Mutation p.R435Q 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-BF-AAOX-01 9 77282805 77282805 C T RORB Silent p.L367L 0.32 TCGA-BF-AAOX-01 9 77397669 77397669 C T TRPM6 Nonsense_Mutation p.W1007* 0.27 TCGA-BF-AAOX-01 9 79322807 79322807 C T PRUNE2 Silent p.K1461K 0.33 TCGA-BF-AAOX-01 9 79325400 79325400 G A PRUNE2 Missense_Mutation p.S597F 0.33 deleterious(0) possibly_damaging(0.854) TCGA-BF-AAOX-01 9 80343581 80343581 G A GNAQ Silent p.N246N 0.28 TCGA-BF-AAOX-01 9 84606023 84606023 C T SPATA31D1 Missense_Mutation p.S213L 0.37 tolerated(0.19) benign(0.137) TCGA-BF-AAOX-01 9 8484293 8484293 G A PTPRD Missense_Mutation p.S1080L 0.33 tolerated(0.73) benign(0.141) TCGA-BF-AAOX-01 9 8500769 8500769 G A PTPRD Nonsense_Mutation p.R705* 0.36 TCGA-BF-AAOX-01 9 8521423 8521423 C T PTPRD Missense_Mutation p.G272E 0.34 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 9 8524999 8524999 T A PTPRD Missense_Mutation p.Q202L 0.30 deleterious(0) probably_damaging(0.978) TCGA-BF-AAOX-01 9 85863411 85863411 C T FRMD3 Missense_Mutation p.E406K 0.35 tolerated(0.58) benign(0) TCGA-BF-AAOX-01 9 92007394 92007394 G A SEMA4D Missense_Mutation p.S189F 0.29 tolerated(0.76) benign(0.105) TCGA-BF-AAOX-01 9 95738934 95738934 G A FGD3 Silent p.E132E 0.62 TCGA-BF-AAOX-01 9 96408030 96408030 C T PHF2 Missense_Mutation p.P140L 0.26 deleterious(0.01) unknown(0) TCGA-BF-AAOX-01 9 97063524 97063524 C T ZNF169 Missense_Mutation p.R562W 0.41 tolerated(0.06) probably_damaging(0.929) TCGA-BF-AAOX-01 9 97207359 97207359 G A HIATL1 Silent p.L208L 0.30 TCGA-BF-AAOX-01 9 990589 990589 C T DMRT3 Nonsense_Mutation p.R335* 0.35 TCGA-BF-AAOX-01 9 99581917 99581917 G A ZNF782 Missense_Mutation p.R130C 0.33 deleterious(0.01) benign(0.004) TCGA-BF-AAOX-01 X 102528912 102528912 C T TCEAL5 Missense_Mutation p.G194S 0.72 tolerated(0.52) possibly_damaging(0.48) TCGA-BF-AAOX-01 X 110653382 110653382 G A DCX Missense_Mutation p.A163V 0.55 tolerated(0.11) possibly_damaging(0.483) TCGA-BF-AAOX-01 X 110653579 110653579 C T DCX Silent p.R97R 0.62 TCGA-BF-AAOX-01 X 112035159 112035159 G A AMOT Silent p.A609A 0.67 TCGA-BF-AAOX-01 X 122459995 122459995 G A GRIA3 Missense_Mutation p.M209I 0.57 tolerated(0.05) benign(0.086) TCGA-BF-AAOX-01 X 129156903 129156903 C T BCORL1 Silent p.F1213F 0.60 TCGA-BF-AAOX-01 X 12995015 12995015 G A TMSB4X 3'UTR 0.52 TCGA-BF-AAOX-01 X 130222655 130222655 G A ARHGAP36 Missense_Mutation p.E514K 0.42 deleterious(0.02) benign(0.008) TCGA-BF-AAOX-01 X 135426882 135426882 C T GPR112 Silent p.S339S 0.60 TCGA-BF-AAOX-01 X 135570361 135570361 G A BRS3 Missense_Mutation p.D30N 0.61 tolerated(0.23) benign(0.202) TCGA-BF-AAOX-01 X 140993338 140993338 C T MAGEC1 Missense_Mutation p.P50S 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-BF-AAOX-01 X 140995859 140995859 C T MAGEC1 Missense_Mutation p.S890F 0.68 deleterious(0) unknown(0) TCGA-BF-AAOX-01 X 1422874 1422874 C T CSF2RA Silent p.T369T 0.39 TCGA-BF-AAOX-01 X 142967189 142967189 G A UBE2NL 5'UTR 0.51 TCGA-BF-AAOX-01 X 144329148 144329148 G A SPANXN1 Silent p.K14K 0.65 TCGA-BF-AAOX-01 X 14708940 14708940 G A GLRA2 Missense_Mutation p.E347K 0.65 tolerated(0.1) possibly_damaging(0.85) TCGA-BF-AAOX-01 X 150885834 150885834 G A FATE1 Missense_Mutation p.R66Q 0.68 tolerated(0.62) benign(0.007) TCGA-BF-AAOX-01 X 150885840 150885840 G A FATE1 Nonsense_Mutation p.W68* 0.68 TCGA-BF-AAOX-01 X 151283511 151283511 C T RP11-1007I13.4 RNA 0.62 TCGA-BF-AAOX-01 X 151424446 151424446 G A GABRA3 Missense_Mutation p.R119W 0.73 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 X 151820170 151820170 G A GABRQ Silent p.Q361Q 0.68 TCGA-BF-AAOX-01 X 151899786 151899786 G A MAGEA12 3'UTR 0.48 TCGA-BF-AAOX-01 X 153216279 153216279 G A HCFC1 Silent p.A1896A 0.67 TCGA-BF-AAOX-01 X 153222939 153222939 A G HCFC1 Missense_Mutation p.S727P 0.60 deleterious(0.02) probably_damaging(0.98) TCGA-BF-AAOX-01 X 154156896 154156896 C T F8 Silent p.E1723E 0.86 TCGA-BF-AAOX-01 X 30236758 30236758 G A MAGEB2 Missense_Mutation p.E21K 0.65 deleterious(0.05) possibly_damaging(0.83) TCGA-BF-AAOX-01 X 37027203 37027203 G A FAM47C Silent p.E240E 0.58 TCGA-BF-AAOX-01 X 37028325 37028325 C G FAM47C Silent p.R614R 0.71 TCGA-BF-AAOX-01 X 37642787 37642787 C T CYBB Silent p.F62F 0.54 TCGA-BF-AAOX-01 X 37658277 37658277 C T CYBB Silent p.I248I 0.76 TCGA-BF-AAOX-01 X 41007795 41007795 C T USP9X Silent p.A531A 0.62 TCGA-BF-AAOX-01 X 47307116 47307116 G A ZNF41 Missense_Mutation p.H685Y 0.71 deleterious(0) probably_damaging(0.989) TCGA-BF-AAOX-01 X 50121176 50121176 C T DGKK RNA 0.89 TCGA-BF-AAOX-01 X 55650470 55650470 C T FOXR2 Missense_Mutation p.P109L 0.83 tolerated(0.06) benign(0.109) TCGA-BF-AAOX-01 X 65253507 65253507 C T VSIG4 Missense_Mutation p.G74E 0.75 deleterious(0) probably_damaging(1) TCGA-BF-AAOX-01 X 66937441 66937441 C T AR Silent p.F765F 0.61 TCGA-BF-AAOX-01 X 70342393 70342393 C T MED12 Silent p.I428I 0.69 TCGA-BF-AAOX-01 X 70519917 70519917 C T NONO Silent p.R469R 0.60 TCGA-BF-AAOX-01 X 73043768 73043768 C T XIST RNA 0.73 TCGA-BF-AAOX-01 X 73961013 73961013 C T KIAA2022 Missense_Mutation p.D1127N 0.70 tolerated(0.76) benign(0.004) TCGA-BF-AAOX-01 X 84526468 84526468 C T ZNF711 Silent p.I640I 0.70 TCGA-BF-AAOX-01 X 99661780 99661780 C T PCDH19 Missense_Mutation p.D606N 0.60 deleterious(0.02) benign(0.408) TCGA-BF-AAOX-01 X 99854069 99854069 G A TNMD Missense_Mutation p.E212K 0.65 tolerated(0.83) benign(0) TCGA-BF-AAOX-01 Y 21871392 21871392 G A KDM5D Silent p.L963L 0.71 TCGA-BF-AAOX-01 Y 4924899 4924899 C T PCDH11Y Missense_Mutation p.S12F 0.60 tolerated_low_confidence(1) benign(0.001) TCGA-BF-AAP0-06 10 102795802 102795802 C T SFXN3 Silent p.S129S 0.08 TCGA-BF-AAP0-06 10 105209183 105209183 G A CALHM2 Silent p.F172F 0.12 TCGA-BF-AAP0-06 10 116038536 116038536 C T VWA2 Silent p.F253F 0.09 TCGA-BF-AAP0-06 10 12071320 12071320 G A UPF2 Missense_Mutation p.S190F 0.09 tolerated(0.15) benign(0.115) TCGA-BF-AAP0-06 10 123846300 123846300 G A TACC2 Missense_Mutation p.E1429K 0.11 benign(0.139) TCGA-BF-AAP0-06 10 16737059 16737059 G A RSU1 Missense_Mutation p.H232Y 0.14 tolerated(0.1) possibly_damaging(0.903) TCGA-BF-AAP0-06 10 17905653 17905653 G A MRC1L1 Missense_Mutation p.E582K 0.15 possibly_damaging(0.905) TCGA-BF-AAP0-06 10 27294619 27294619 G A ANKRD26 Missense_Mutation p.S1678F 0.06 tolerated(0.13) benign(0.023) TCGA-BF-AAP0-06 10 28196654 28196654 G A ARMC4 Missense_Mutation p.P850S 0.15 tolerated(0.18) benign(0.303) TCGA-BF-AAP0-06 10 32324919 32324919 T C KIF5B Missense_Mutation p.S239G 0.20 tolerated(0.38) benign(0.001) TCGA-BF-AAP0-06 10 45938637 45938637 G A ALOX5 Missense_Mutation p.G475E 0.11 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP0-06 10 61835575 61835575 G A ANK3 Silent p.V1688V 0.11 TCGA-BF-AAP0-06 10 62149290 62149290 G A ANK3 Missense_Mutation p.H3Y 0.10 benign(0.441) TCGA-BF-AAP0-06 10 63170461 63170461 G A TMEM26 Silent p.F242F 0.11 TCGA-BF-AAP0-06 10 70968625 70968625 C T SUPV3L1 Missense_Mutation p.S732F 0.11 deleterious(0.01) possibly_damaging(0.498) TCGA-BF-AAP0-06 10 74684190 74684190 G A OIT3 Silent p.G385G 0.08 TCGA-BF-AAP0-06 10 87407137 87407137 G A GRID1 Missense_Mutation p.S672F 0.11 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP0-06 10 88703301 88703301 C T MMRN2 Missense_Mutation p.E414K 0.10 deleterious(0.04) probably_damaging(0.983) TCGA-BF-AAP0-06 10 95791303 95791303 G A PLCE1 Missense_Mutation p.G167E 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.548) TCGA-BF-AAP0-06 10 96602697 96602697 C T CYP2C19 Silent p.V355V 0.09 TCGA-BF-AAP0-06 11 102666014 102666014 G A MMP1 Nonsense_Mutation p.Q264* 0.21 TCGA-BF-AAP0-06 11 114121278 114121278 A G ZBTB16 3'UTR 0.12 TCGA-BF-AAP0-06 11 117870239 117870239 C T IL10RA Silent p.S540S 0.26 TCGA-BF-AAP0-06 11 124179784 124179784 C T OR8D1 Silent p.R293R 0.18 TCGA-BF-AAP0-06 11 124794809 124794809 T A HEPACAM Missense_Mutation p.Q81L 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-BF-AAP0-06 11 125452267 125452267 C T EI24 Missense_Mutation p.P271S 0.25 deleterious(0) benign(0.241) TCGA-BF-AAP0-06 11 1629257 1629257 C T KRTAP5-3 Missense_Mutation p.G120D 0.13 tolerated(0.23) unknown(0) TCGA-BF-AAP0-06 11 18956426 18956426 G A MRGPRX1 5'UTR 0.13 TCGA-BF-AAP0-06 11 20639297 20639297 G A SLC6A5 Splice_Site p.X376_splice 0.13 TCGA-BF-AAP0-06 11 2356965 2356965 G A CD81-AS1 Intron 0.11 TCGA-BF-AAP0-06 11 35461204 35461204 C T PAMR1 Silent p.R374R 0.11 TCGA-BF-AAP0-06 11 3680884 3680884 C T ART1 Silent p.S45S 0.22 TCGA-BF-AAP0-06 11 45672284 45672284 G A CHST1 Missense_Mutation p.L64F 0.22 deleterious(0) probably_damaging(0.971) TCGA-BF-AAP0-06 11 46564838 46564838 G A AMBRA1 Silent p.F243F 0.15 TCGA-BF-AAP0-06 11 49974272 49974272 T A OR4C13 Missense_Mutation p.F100I 0.14 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-BF-AAP0-06 11 5010898 5010898 C T MMP26 Silent p.F40F 0.12 TCGA-BF-AAP0-06 11 55594988 55594988 G A OR5L2 Missense_Mutation p.M98I 0.14 tolerated(0.6) benign(0.049) TCGA-BF-AAP0-06 11 55889890 55889890 C T OR8H3 Silent p.I14I 0.13 TCGA-BF-AAP0-06 11 55904899 55904899 G A OR8J3 Missense_Mutation p.T99I 0.15 tolerated(0.23) benign(0.033) TCGA-BF-AAP0-06 11 56043138 56043138 G A OR5T1 Missense_Mutation p.M8I 0.08 tolerated_low_confidence(0.06) benign(0.001) TCGA-BF-AAP0-06 11 57379372 57379372 G A SERPING1 Silent p.T404T 0.13 TCGA-BF-AAP0-06 11 5758016 5758016 C T OR56B1 Silent p.I90I 0.11 TCGA-BF-AAP0-06 11 5798891 5798891 C T OR52N5 Silent p.%3D 0.12 TCGA-BF-AAP0-06 11 63885029 63885029 G A FLRT1 Missense_Mutation p.M430I 0.20 tolerated(0.34) benign(0.062) TCGA-BF-AAP0-06 11 64627594 64627594 G A EHD1 Silent p.S239S 0.17 TCGA-BF-AAP0-06 11 6530151 6530151 C T DNHD1 Missense_Mutation p.P321L 0.12 possibly_damaging(0.887) TCGA-BF-AAP0-06 11 66039272 66039272 T C RAB1B Missense_Mutation p.Y7H 0.13 tolerated(0.09) benign(0.055) TCGA-BF-AAP0-06 11 73076882 73076882 C T ARHGEF17 Missense_Mutation p.P1962L 0.11 tolerated(0.15) possibly_damaging(0.781) TCGA-BF-AAP0-06 11 7324335 7324335 C T SYT9 Missense_Mutation p.L71F 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-BF-AAP0-06 11 74168380 74168380 G A KCNE3 Silent p.L77L 0.21 TCGA-BF-AAP0-06 11 78423547 78423547 G A TENM4 Missense_Mutation p.A1345V 0.14 deleterious(0.02) benign(0.285) TCGA-BF-AAP0-06 11 7984901 7984901 C T NLRP10 Missense_Mutation p.E48K 0.07 deleterious(0.04) possibly_damaging(0.618) TCGA-BF-AAP0-06 11 85584275 85584275 C T CCDC83 Silent p.A39A 0.10 TCGA-BF-AAP0-06 11 89882191 89882191 C T NAALAD2 Silent p.Y133Y 0.11 TCGA-BF-AAP0-06 11 92532065 92532065 C T FAT3 Silent p.F1962F 0.18 TCGA-BF-AAP0-06 12 106729869 106729869 A C TCP11L2 Missense_Mutation p.K340N 0.13 tolerated(0.28) probably_damaging(0.924) TCGA-BF-AAP0-06 12 10775265 10775265 C T STYK1 Silent p.G313G 0.06 TCGA-BF-AAP0-06 12 109194609 109194609 G A SSH1 Silent p.T365T 0.11 TCGA-BF-AAP0-06 12 109194610 109194610 G A SSH1 Missense_Mutation p.T365I 0.11 deleterious(0) possibly_damaging(0.673) TCGA-BF-AAP0-06 12 113812732 113812732 C T PLBD2 Missense_Mutation p.A260V 0.18 tolerated(0.05) benign(0.109) TCGA-BF-AAP0-06 12 113865853 113865853 G A SDSL Silent p.E22E 0.17 TCGA-BF-AAP0-06 12 113875890 113875890 C T SDSL 3'UTR 0.06 TCGA-BF-AAP0-06 12 120156650 120156650 C T CIT Missense_Mutation p.R1286Q 0.11 tolerated(0.15) probably_damaging(0.943) TCGA-BF-AAP0-06 12 123970279 123970279 G A RILPL1 Missense_Mutation p.P292L 0.20 deleterious(0) probably_damaging(0.971) TCGA-BF-AAP0-06 12 124799042 124799042 C T FAM101A Missense_Mutation p.P127S 0.23 tolerated(0.19) benign(0.007) TCGA-BF-AAP0-06 12 125435310 125435310 G A DHX37 Missense_Mutation p.S970F 0.16 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP0-06 12 22837428 22837428 C T ETNK1 Silent p.F408F 0.11 TCGA-BF-AAP0-06 12 33579183 33579183 G A SYT10 Silent p.I133I 0.09 TCGA-BF-AAP0-06 12 49255854 49255854 C T RND1 Missense_Mutation p.D86N 0.08 tolerated(0.09) probably_damaging(0.937) TCGA-BF-AAP0-06 12 49458795 49458795 C T RHEBL1 3'UTR 0.18 TCGA-BF-AAP0-06 12 52284724 52284724 C T ANKRD33 Missense_Mutation p.P332S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP0-06 12 52827590 52827590 C T KRT75 Splice_Site p.X166_splice 0.09 TCGA-BF-AAP0-06 12 52842665 52842665 G A KRT6B Silent p.I388I 0.10 TCGA-BF-AAP0-06 12 53189281 53189281 G A KRT3 Silent p.P182P 0.13 TCGA-BF-AAP0-06 12 53895893 53895893 C T TARBP2 Missense_Mutation p.L50F 0.09 tolerated(0.13) probably_damaging(1) TCGA-BF-AAP0-06 12 54795409 54795409 G A ITGA5 Missense_Mutation p.R783W 0.07 deleterious(0.01) possibly_damaging(0.606) TCGA-BF-AAP0-06 12 54911346 54911346 C T NCKAP1L Silent p.F375F 0.06 TCGA-BF-AAP0-06 12 55420253 55420253 G C NEUROD4 Missense_Mutation p.E10D 0.15 tolerated(0.57) benign(0.002) TCGA-BF-AAP0-06 12 55688337 55688337 G T OR6C6 Missense_Mutation p.S227Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-BF-AAP0-06 12 56559484 56559484 C T SMARCC2 Splice_Site p.X920_splice 0.16 TCGA-BF-AAP0-06 12 57971521 57971521 T C KIF5A Missense_Mutation p.S776P 0.17 deleterious(0) possibly_damaging(0.623) TCGA-BF-AAP0-06 12 6145616 6145616 G A VWF Silent p.P828P 0.08 TCGA-BF-AAP0-06 12 6167042 6167042 C T VWF Missense_Mutation p.D568N 0.18 tolerated(0.09) benign(0.103) TCGA-BF-AAP0-06 12 7295530 7295530 C T CLSTN3 Missense_Mutation p.R536C 0.11 deleterious(0) possibly_damaging(0.849) TCGA-BF-AAP0-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.15 TCGA-BF-AAP0-06 12 7842517 7842517 C T GDF3 Missense_Mutation p.R351Q 0.09 deleterious(0.03) possibly_damaging(0.902) TCGA-BF-AAP0-06 12 7981377 7981377 C T SLC2A14 Missense_Mutation p.S223N 0.17 tolerated(0.32) possibly_damaging(0.717) TCGA-BF-AAP0-06 12 80660378 80660378 T C OTOGL Missense_Mutation p.L782P 0.29 tolerated(0.08) possibly_damaging(0.908) TCGA-BF-AAP0-06 12 9353646 9353646 C T PZP Missense_Mutation p.R171K 0.12 tolerated(1) benign(0.011) TCGA-BF-AAP0-06 12 96354290 96354290 G A AMDHD1 Silent p.E234E 0.11 TCGA-BF-AAP0-06 12 96617449 96617449 C T ELK3 Silent p.L35L 0.08 TCGA-BF-AAP0-06 12 97114237 97114237 G A C12orf55 Missense_Mutation p.E2287K 0.14 deleterious(0.03) benign(0.001) TCGA-BF-AAP0-06 13 103515398 103515398 C T BIVM-ERCC5 Silent p.S1059S 0.17 TCGA-BF-AAP0-06 13 38156515 38156515 G A POSTN Silent p.F460F 0.08 TCGA-BF-AAP0-06 13 42875847 42875847 C T AKAP11 Missense_Mutation p.P989S 0.08 tolerated(0.17) benign(0.002) TCGA-BF-AAP0-06 13 44434042 44434042 A G CCDC122 Silent p.L107L 0.18 TCGA-BF-AAP0-06 13 73467958 73467958 A G PIBF1 Silent p.V453V 0.10 TCGA-BF-AAP0-06 13 78492443 78492443 G A EDNRB Missense_Mutation p.P179L 0.17 tolerated(0.21) benign(0.002) TCGA-BF-AAP0-06 13 88328639 88328639 G A SLITRK5 Silent p.K332K 0.16 TCGA-BF-AAP0-06 14 100594905 100594905 C T EVL Silent p.V179V 0.21 TCGA-BF-AAP0-06 14 105936402 105936402 G A MTA1 Silent p.R666R 0.09 TCGA-BF-AAP0-06 14 106815880 106815880 C T IGHV3-33 Missense_Mutation p.E65K 0.08 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-BF-AAP0-06 14 106815929 106815929 G A IGHV3-33 Silent p.F48F 0.11 TCGA-BF-AAP0-06 14 106926359 106926359 C T IGHV3-43 Silent p.G61G 0.08 TCGA-BF-AAP0-06 14 107078550 107078550 C T IGHV1-58 Silent p.Q58Q 0.08 TCGA-BF-AAP0-06 14 20215785 20215785 C T OR4Q3 Missense_Mutation p.L67F 0.10 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP0-06 14 20389491 20389491 C T OR4K5 Silent p.S242S 0.14 TCGA-BF-AAP0-06 14 20403846 20403846 G A OR4K1 Silent p.S7S 0.09 TCGA-BF-AAP0-06 14 20483183 20483183 G A OR4K14 Missense_Mutation p.S57F 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-BF-AAP0-06 14 22386717 22386717 C T TRAV13-2 Silent p.N42N 0.16 TCGA-BF-AAP0-06 14 23417081 23417081 G T HAUS4 Missense_Mutation p.S235Y 0.13 tolerated(0.48) possibly_damaging(0.597) TCGA-BF-AAP0-06 14 23512128 23512128 G A PSMB11 Missense_Mutation p.G232R 0.11 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 14 23818536 23818536 G A SLC22A17 Silent p.L157L 0.12 TCGA-BF-AAP0-06 14 23896056 23896056 C T MYH7 Silent p.L658L 0.17 TCGA-BF-AAP0-06 14 24527380 24527380 C T LRRC16B Missense_Mutation p.L447F 0.11 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP0-06 14 24739638 24739638 G A RABGGTA Silent p.S47S 0.18 TCGA-BF-AAP0-06 14 33292648 33292648 G A AKAP6 Missense_Mutation p.E1877K 0.12 tolerated(0.06) probably_damaging(0.993) TCGA-BF-AAP0-06 14 55168826 55168826 C T SAMD4A Silent p.S81S 0.10 TCGA-BF-AAP0-06 14 60903536 60903536 A G C14orf39 3'UTR 0.15 TCGA-BF-AAP0-06 14 73574594 73574594 C T RBM25 Missense_Mutation p.P510S 0.08 possibly_damaging(0.641) TCGA-BF-AAP0-06 14 79181424 79181424 G A NRXN3 Nonsense_Mutation p.W289* 0.08 TCGA-BF-AAP0-06 14 88693765 88693765 C T KCNK10 Missense_Mutation p.G212E 0.11 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 14 89124730 89124730 C T EML5 Silent p.G1226G 0.07 TCGA-BF-AAP0-06 14 92403352 92403352 C T FBLN5 Silent p.T106T 0.07 TCGA-BF-AAP0-06 14 95080842 95080842 C A SERPINA3 Missense_Mutation p.L22I 0.11 tolerated(0.19) benign(0.175) TCGA-BF-AAP0-06 14 96730202 96730202 C T BDKRB1 Silent p.V61V 0.07 TCGA-BF-AAP0-06 15 23300026 23300026 G A HERC2P2 RNA 0.12 TCGA-BF-AAP0-06 15 23445519 23445519 G A AC100757.1 3'Flank 0.11 TCGA-BF-AAP0-06 15 23931560 23931560 C T NDN Missense_Mutation p.E269K 0.09 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP0-06 15 25448284 25448284 C T SNORD115-20 5'Flank 0.12 TCGA-BF-AAP0-06 15 25468447 25468447 C T SNORD115-29 RNA 0.12 TCGA-BF-AAP0-06 15 40093920 40093920 G A GPR176 Missense_Mutation p.L321F 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-BF-AAP0-06 15 40754274 40754274 C T BAHD1 Silent p.A532A 0.13 TCGA-BF-AAP0-06 15 43531139 43531139 G A TGM5 Silent p.L407L 0.09 TCGA-BF-AAP0-06 15 44028410 44028410 G A RNU6-354P 5'Flank 0.11 TCGA-BF-AAP0-06 15 48762937 48762937 G A FBN1 Silent p.S1451S 0.11 TCGA-BF-AAP0-06 15 48762938 48762938 G A FBN1 Missense_Mutation p.S1451F 0.11 possibly_damaging(0.511) TCGA-BF-AAP0-06 15 49170541 49170541 C T EID1 Silent p.G56G 0.17 TCGA-BF-AAP0-06 15 49860481 49860481 G A FAM227B Silent p.F236F 0.10 TCGA-BF-AAP0-06 15 50885854 50885854 G A TRPM7 Missense_Mutation p.H1190Y 0.20 deleterious(0.03) benign(0.001) TCGA-BF-AAP0-06 15 57544651 57544651 T A TCF12 Missense_Mutation p.H407Q 0.22 tolerated(0.05) probably_damaging(0.996) TCGA-BF-AAP0-06 15 60907212 60907212 C T RORA Intron 0.14 TCGA-BF-AAP0-06 15 71193308 71193308 C T LRRC49 Missense_Mutation p.L86F 0.16 deleterious(0.03) possibly_damaging(0.894) TCGA-BF-AAP0-06 15 72549747 72549747 G A PARP6 Missense_Mutation p.S314F 0.06 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP0-06 15 74468471 74468471 C T ISLR Silent p.F424F 0.17 TCGA-BF-AAP0-06 15 75014906 75014906 A G CYP1A1 Missense_Mutation p.M178T 0.10 tolerated(0.29) benign(0.292) TCGA-BF-AAP0-06 15 78893743 78893743 T A CHRNA3 Missense_Mutation p.N414I 0.10 tolerated(0.17) benign(0.368) TCGA-BF-AAP0-06 15 79750469 79750469 T A KIAA1024 Silent p.S660S 0.10 TCGA-BF-AAP0-06 15 85406053 85406053 C T ALPK3 Silent p.G1641G 0.12 TCGA-BF-AAP0-06 16 20557724 20557724 C T ACSM2B Missense_Mutation p.D391N 0.09 deleterious(0.04) benign(0.42) TCGA-BF-AAP0-06 16 21739694 21739694 C T OTOA Missense_Mutation p.P717S 0.09 tolerated(0.69) benign(0.149) TCGA-BF-AAP0-06 16 21739695 21739695 C T OTOA Missense_Mutation p.P717L 0.09 tolerated(0.37) benign(0.008) TCGA-BF-AAP0-06 16 28124231 28124231 G A XPO6 Silent p.V715V 0.11 TCGA-BF-AAP0-06 16 29998089 29998089 G A TAOK2 Silent p.G832G 0.08 TCGA-BF-AAP0-06 16 30490698 30490698 G A ITGAL Silent p.S164S 0.15 TCGA-BF-AAP0-06 16 30492780 30492780 C T ITGAL Silent p.S199S 0.11 TCGA-BF-AAP0-06 16 30964783 30964783 T C ORAI3 Missense_Mutation p.V169A 0.11 deleterious(0) benign(0.293) TCGA-BF-AAP0-06 16 31426210 31426210 C T ITGAD Silent p.I727I 0.11 TCGA-BF-AAP0-06 16 31498714 31498714 G A SLC5A2 Missense_Mutation p.M216I 0.17 deleterious(0.01) benign(0.142) TCGA-BF-AAP0-06 16 3614578 3614578 C T NLRC3 Silent p.R167R 0.10 TCGA-BF-AAP0-06 16 3777903 3777903 G A CREBBP Missense_Mutation p.S2382F 0.10 unknown(0) TCGA-BF-AAP0-06 16 47347650 47347650 C T ITFG1 Missense_Mutation p.G296E 0.11 deleterious(0.03) benign(0.046) TCGA-BF-AAP0-06 16 66570885 66570885 G A TK2 Silent p.V89V 0.14 TCGA-BF-AAP0-06 16 68712429 68712429 C T CDH3 Missense_Mutation p.T139I 0.13 tolerated(0.31) probably_damaging(0.958) TCGA-BF-AAP0-06 16 72157459 72157459 C T PMFBP1 Nonsense_Mutation p.W893* 0.07 TCGA-BF-AAP0-06 16 74330851 74330851 C T PSMD7 Silent p.P13P 0.21 TCGA-BF-AAP0-06 16 74334972 74334972 A C PSMD7 Missense_Mutation p.K63N 0.12 deleterious(0.05) benign(0.066) TCGA-BF-AAP0-06 16 77369679 77369679 G A ADAMTS18 Silent p.F611F 0.17 TCGA-BF-AAP0-06 16 81151013 81151013 C T PKD1L2 RNA 0.09 TCGA-BF-AAP0-06 16 84940351 84940351 C T CRISPLD2 3'UTR 0.33 TCGA-BF-AAP0-06 16 85024098 85024098 G A ZDHHC7 Missense_Mutation p.R43C 0.17 deleterious(0.02) possibly_damaging(0.828) TCGA-BF-AAP0-06 16 86613167 86613167 G A FOXL1 Missense_Mutation p.E280K 0.19 deleterious(0.05) benign(0.055) TCGA-BF-AAP0-06 17 10426881 10426881 G A MYH2 Missense_Mutation p.R1802C 0.08 deleterious(0.01) benign(0.079) TCGA-BF-AAP0-06 17 18638289 18638289 C T TRIM16L Missense_Mutation p.P188L 0.13 deleterious(0) possibly_damaging(0.543) TCGA-BF-AAP0-06 17 21730892 21730892 C T UBBP4 Missense_Mutation p.S65L 0.17 deleterious(0) probably_damaging(0.962) TCGA-BF-AAP0-06 17 27577242 27577242 G A CRYBA1 Missense_Mutation p.E47K 0.09 deleterious(0) possibly_damaging(0.829) TCGA-BF-AAP0-06 17 3181475 3181475 G A OR3A2 Missense_Mutation p.S252F 0.08 deleterious(0) possibly_damaging(0.616) TCGA-BF-AAP0-06 17 3518813 3518813 G A SHPK Missense_Mutation p.S281L 0.23 deleterious(0) possibly_damaging(0.905) TCGA-BF-AAP0-06 17 36499583 36499583 C T GPR179 Silent p.R30R 0.17 TCGA-BF-AAP0-06 17 36872730 36872730 C T MLLT6 Missense_Mutation p.P383S 0.16 tolerated(0.75) unknown(0) TCGA-BF-AAP0-06 17 37188606 37188606 C T LRRC37A11P RNA 0.11 TCGA-BF-AAP0-06 17 37566349 37566349 G A MED1 Nonsense_Mutation p.Q709* 0.05 TCGA-BF-AAP0-06 17 38911481 38911481 G A KRT25 Missense_Mutation p.R15C 0.17 tolerated(0.15) probably_damaging(0.99) TCGA-BF-AAP0-06 17 39087625 39087625 T C KRT23 Missense_Mutation p.K160R 0.12 deleterious(0.03) benign(0.058) TCGA-BF-AAP0-06 17 39156072 39156072 G T KRTAP3-2 Missense_Mutation p.P12T 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-BF-AAP0-06 17 39406365 39406365 C T KRTAP9-4 Silent p.R131R 0.12 TCGA-BF-AAP0-06 17 4009081 4009081 G A ZZEF1 Missense_Mutation p.P434S 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 17 4053251 4053251 C T CYB5D2 Missense_Mutation p.S106F 0.11 deleterious(0) possibly_damaging(0.835) TCGA-BF-AAP0-06 17 40914683 40914683 C T RAMP2 Missense_Mutation p.P114L 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-BF-AAP0-06 17 42340226 42340226 C T SLC4A1 Silent p.E3E 0.08 TCGA-BF-AAP0-06 17 43309755 43309755 C T FMNL1 Missense_Mutation p.P79S 0.15 deleterious(0.02) unknown(0) TCGA-BF-AAP0-06 17 47587778 47587778 C T NGFR Silent p.I191I 0.12 TCGA-BF-AAP0-06 17 4927391 4927391 G A KIF1C Missense_Mutation p.R1086Q 0.09 deleterious_low_confidence(0) benign(0.238) TCGA-BF-AAP0-06 17 61901482 61901482 C T FTSJ3 Silent p.L372L 0.10 TCGA-BF-AAP0-06 17 62230326 62230326 G A TEX2 Missense_Mutation p.P1047L 0.07 deleterious(0) probably_damaging(0.984) TCGA-BF-AAP0-06 17 65862763 65862763 G A BPTF Silent p.K540K 0.10 TCGA-BF-AAP0-06 17 66533674 66533674 C T FAM20A Missense_Mutation p.D524N 0.12 tolerated(0.34) benign(0.003) TCGA-BF-AAP0-06 17 71232451 71232451 C T C17orf80 Missense_Mutation p.S277F 0.16 deleterious(0) probably_damaging(0.989) TCGA-BF-AAP0-06 17 7160243 7160243 C T ELP5 Silent p.G175G 0.16 TCGA-BF-AAP0-06 17 7160244 7160244 C T ELP5 Missense_Mutation p.P176S 0.13 tolerated(0.1) possibly_damaging(0.658) TCGA-BF-AAP0-06 17 72351418 72351418 C T KIF19 Silent p.T988T 0.14 TCGA-BF-AAP0-06 17 72584894 72584894 C T CD300LD Nonsense_Mutation p.W45* 0.07 TCGA-BF-AAP0-06 17 73758897 73758897 G A GALK1 Silent p.V227V 0.11 TCGA-BF-AAP0-06 17 7667448 7667448 C T DNAH2 Missense_Mutation p.P1065S 0.09 probably_damaging(0.967) TCGA-BF-AAP0-06 18 14543072 14543072 C T POTEC Missense_Mutation p.G25D 0.07 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-BF-AAP0-06 18 21711867 21711867 C T TTC39C Silent p.L549L 0.12 TCGA-BF-AAP0-06 18 334773 334773 C T COLEC12 Silent p.Q595Q 0.26 TCGA-BF-AAP0-06 18 47320794 47320794 C T ACAA2 Missense_Mutation p.E145K 0.13 tolerated(0.1) benign(0.159) TCGA-BF-AAP0-06 18 47373573 47373573 C T MYO5B Missense_Mutation p.G1468S 0.20 deleterious(0) probably_damaging(0.945) TCGA-BF-AAP0-06 18 51025846 51025846 G A DCC Silent p.P1359P 0.08 TCGA-BF-AAP0-06 18 61264453 61264453 G A SERPINB13 Silent p.E344E 0.09 TCGA-BF-AAP0-06 18 743014 743014 G A YES1 Nonsense_Mutation p.Q322* 0.12 TCGA-BF-AAP0-06 19 10415730 10415730 G A ZGLP1 3'UTR 0.22 TCGA-BF-AAP0-06 19 13007044 13007044 C T GCDH Silent p.L221L 0.13 TCGA-BF-AAP0-06 19 15789169 15789169 C T CYP4F12 Silent p.I99I 0.08 TCGA-BF-AAP0-06 19 16006373 16006373 A T CYP4F2 Missense_Mutation p.S96T 0.11 tolerated(0.38) benign(0) TCGA-BF-AAP0-06 19 17122308 17122308 G A CPAMD8 Missense_Mutation p.T198I 0.11 tolerated(0.09) benign(0.073) TCGA-BF-AAP0-06 19 17305563 17305563 C T MYO9B Silent p.S1109S 0.14 TCGA-BF-AAP0-06 19 20117876 20117876 G A ZNF682 Silent p.F145F 0.10 TCGA-BF-AAP0-06 19 21117848 21117848 C T ZNF85 Missense_Mutation p.P75L 0.09 deleterious(0.04) benign(0.021) TCGA-BF-AAP0-06 19 22575615 22575615 C T ZNF98 Missense_Mutation p.G141E 0.16 tolerated(0.57) possibly_damaging(0.476) TCGA-BF-AAP0-06 19 24010333 24010333 G A RPSAP58 Missense_Mutation p.V124I 0.15 tolerated(0.07) benign(0.439) TCGA-BF-AAP0-06 19 33610010 33610010 C T GPATCH1 Silent p.P836P 0.14 TCGA-BF-AAP0-06 19 35979732 35979732 G A KRTDAP Missense_Mutation p.T33I 0.31 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-BF-AAP0-06 19 36348249 36348249 C T KIRREL2 Missense_Mutation p.P22S 0.12 tolerated(0.47) benign(0.001) TCGA-BF-AAP0-06 19 37440547 37440547 G A ZNF568 Silent p.L164L 0.09 TCGA-BF-AAP0-06 19 38160546 38160546 C T ZNF781 Silent p.L168L 0.06 TCGA-BF-AAP0-06 19 38230673 38230673 G A ZNF573 Missense_Mutation p.H240Y 0.11 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP0-06 19 39098783 39098783 C T MAP4K1 Missense_Mutation p.R345Q 0.14 tolerated(0.42) benign(0.002) TCGA-BF-AAP0-06 19 40097890 40097890 G A LGALS13 Missense_Mutation p.G111S 0.12 tolerated(1) benign(0.003) TCGA-BF-AAP0-06 19 40542228 40542228 G A ZNF780B Missense_Mutation p.L180F 0.09 tolerated(0.08) probably_damaging(0.966) TCGA-BF-AAP0-06 19 45541060 45541060 C T RELB 3'UTR 0.10 TCGA-BF-AAP0-06 19 48244207 48244207 G A EHD2 Missense_Mutation p.E384K 0.15 tolerated(0.51) benign(0.016) TCGA-BF-AAP0-06 19 49797729 49797729 G A SLC6A16 Silent p.N437N 0.14 TCGA-BF-AAP0-06 19 52918892 52918892 C T ZNF528 Missense_Mutation p.H263Y 0.07 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP0-06 19 54515348 54515348 A T CACNG6 Missense_Mutation p.I230F 0.10 deleterious(0.02) benign(0.424) TCGA-BF-AAP0-06 19 54783445 54783445 C T LILRB2 Missense_Mutation p.G138E 0.10 tolerated(0.07) benign(0.252) TCGA-BF-AAP0-06 19 54822915 54822915 G A LILRA5 Nonsense_Mutation p.Q161* 0.08 TCGA-BF-AAP0-06 19 55281307 55281307 C T KIR2DL1 Missense_Mutation p.S2L 0.10 tolerated_low_confidence(0.1) benign(0.004) TCGA-BF-AAP0-06 19 55331443 55331443 G A KIR3DL1 Missense_Mutation p.D211N 0.16 tolerated(0.06) benign(0.142) TCGA-BF-AAP0-06 19 55349217 55349217 C T KIR2DS4 Missense_Mutation p.S86F 0.15 tolerated_low_confidence(0.1) possibly_damaging(0.807) TCGA-BF-AAP0-06 19 55377351 55377351 C T KIR3DL2 Silent p.C364C 0.16 TCGA-BF-AAP0-06 19 55450285 55450285 C T NLRP7 Missense_Mutation p.M634I 0.12 tolerated(0.16) benign(0) TCGA-BF-AAP0-06 19 56467276 56467276 G A NLRP8 Missense_Mutation p.E618K 0.10 deleterious(0.02) possibly_damaging(0.79) TCGA-BF-AAP0-06 19 57641956 57641956 G A USP29 Missense_Mutation p.R638K 0.10 tolerated(1) benign(0.006) TCGA-BF-AAP0-06 19 808628 808628 C T PTBP1 Silent p.P443P 0.29 TCGA-BF-AAP0-06 19 9062992 9062992 C T MUC16 Missense_Mutation p.E8152K 0.09 unknown(0) TCGA-BF-AAP0-06 19 9074329 9074329 G A MUC16 Missense_Mutation p.P4373S 0.16 unknown(0) TCGA-BF-AAP0-06 19 9090482 9090482 G A MUC16 Missense_Mutation p.P445S 0.09 unknown(0) TCGA-BF-AAP0-06 19 9090772 9090772 G A MUC16 Missense_Mutation p.S348F 0.11 unknown(0) TCGA-BF-AAP0-06 1 110086436 110086436 G A GPR61 Silent p.T264T 0.19 TCGA-BF-AAP0-06 1 12918848 12918848 C T PRAMEF2 5'UTR 0.19 TCGA-BF-AAP0-06 1 12919639 12919639 G A PRAMEF2 Missense_Mutation p.E127K 0.07 tolerated(0.28) probably_damaging(0.97) TCGA-BF-AAP0-06 1 12941989 12941989 C T PRAMEF4 Silent p.L187L 0.11 TCGA-BF-AAP0-06 1 143767482 143767482 C T PPIAL4G Missense_Mutation p.D123N 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.46) TCGA-BF-AAP0-06 1 152280965 152280965 C T FLG Missense_Mutation p.E2133K 0.12 benign(0.292) TCGA-BF-AAP0-06 1 152281969 152281969 C T FLG Missense_Mutation p.R1798Q 0.05 benign(0.238) TCGA-BF-AAP0-06 1 153315668 153315668 C T PGLYRP4 Missense_Mutation p.D124N 0.14 deleterious(0.04) benign(0.2) TCGA-BF-AAP0-06 1 155340352 155340352 C T ASH1L Missense_Mutation p.G2210E 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-BF-AAP0-06 1 156170133 156170133 A G SLC25A44 Silent p.Q165Q 0.09 TCGA-BF-AAP0-06 1 156617373 156617373 C T BCAN Silent p.A180A 0.09 TCGA-BF-AAP0-06 1 157494173 157494173 G A FCRL5 Missense_Mutation p.S712F 0.06 tolerated(0.12) benign(0.261) TCGA-BF-AAP0-06 1 157508883 157508883 G A FCRL5 Silent p.S465S 0.09 TCGA-BF-AAP0-06 1 157773795 157773795 G A FCRL1 Silent p.C53C 0.13 TCGA-BF-AAP0-06 1 158436102 158436102 C T OR10K1 Missense_Mutation p.H251Y 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP0-06 1 160194883 160194883 G A DCAF8 Silent p.I390I 0.09 TCGA-BF-AAP0-06 1 160458897 160458897 G A SLAMF6 Missense_Mutation p.S287L 0.15 deleterious(0.05) benign(0.351) TCGA-BF-AAP0-06 1 16641734 16641734 G A FBXO42 Silent p.S60S 0.10 TCGA-BF-AAP0-06 1 167666379 167666379 G A RCSD1 Missense_Mutation p.R173Q 0.12 tolerated(0.18) benign(0.22) TCGA-BF-AAP0-06 1 176659457 176659457 C T PAPPA2 Silent p.T774T 0.13 TCGA-BF-AAP0-06 1 179503982 179503982 G A AXDND1 Silent p.K972K 0.09 TCGA-BF-AAP0-06 1 181687285 181687285 C T CACNA1E Silent p.F540F 0.30 TCGA-BF-AAP0-06 1 183195866 183195866 C A LAMC2 Nonsense_Mutation p.S367* 0.15 TCGA-BF-AAP0-06 1 183221680 183221680 G A NMNAT2 3'UTR 0.17 TCGA-BF-AAP0-06 1 192316471 192316471 G A RGS21 Missense_Mutation p.E14K 0.06 deleterious(0.03) benign(0.081) TCGA-BF-AAP0-06 1 196919996 196919996 C T CFHR2 Missense_Mutation p.P90S 0.11 tolerated(0.11) probably_damaging(0.999) TCGA-BF-AAP0-06 1 197008410 197008410 G A F13B 3'UTR 0.11 TCGA-BF-AAP0-06 1 201046228 201046228 C T CACNA1S Silent p.V549V 0.11 TCGA-BF-AAP0-06 1 20220962 20220962 C T OTUD3 Missense_Mutation p.P158S 0.17 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 1 202288196 202288196 G A LGR6 Missense_Mutation p.G922E 0.18 tolerated_low_confidence(0.06) benign(0.282) TCGA-BF-AAP0-06 1 204228761 204228761 C T PLEKHA6 Missense_Mutation p.G211D 0.07 tolerated(0.1) benign(0.158) TCGA-BF-AAP0-06 1 207643297 207643297 G A CR2 Missense_Mutation p.G359S 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP0-06 1 207646382 207646382 G A CR2 Silent p.K612K 0.05 TCGA-BF-AAP0-06 1 21584059 21584059 G A ECE1 Missense_Mutation p.P263S 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 1 21902395 21902395 C T ALPL Silent p.T389T 0.24 TCGA-BF-AAP0-06 1 222737423 222737423 G A TAF1A Silent p.F313F 0.06 TCGA-BF-AAP0-06 1 229600529 229600529 C T NUP133 Missense_Mutation p.R798Q 0.15 tolerated(0.12) probably_damaging(0.968) TCGA-BF-AAP0-06 1 237919651 237919651 G A RYR2 Missense_Mutation p.A3737T 0.16 probably_damaging(0.912) TCGA-BF-AAP0-06 1 2415990 2415990 C T PLCH2 Missense_Mutation p.T223I 0.12 deleterious(0.01) possibly_damaging(0.66) TCGA-BF-AAP0-06 1 247588393 247588393 C T NLRP3 Missense_Mutation p.R550C 0.09 tolerated(0.12) benign(0) TCGA-BF-AAP0-06 1 247655065 247655065 C T OR2W5 RNA 0.17 TCGA-BF-AAP0-06 1 248224624 248224624 C T OR2L3 Missense_Mutation p.S214L 0.17 tolerated(1) benign(0.002) TCGA-BF-AAP0-06 1 248813251 248813251 C T OR2T27 Missense_Mutation p.G312E 0.09 tolerated(0.99) benign(0.001) TCGA-BF-AAP0-06 1 249110796 249110796 G A SH3BP5L Silent p.S104S 0.09 TCGA-BF-AAP0-06 1 27124278 27124278 C T PIGV Silent p.F475F 0.21 TCGA-BF-AAP0-06 1 27216405 27216405 G A GPN2 Silent p.G61G 0.13 TCGA-BF-AAP0-06 1 33330181 33330181 C T FNDC5 Intron 0.25 TCGA-BF-AAP0-06 1 34090835 34090835 G A CSMD2 Silent p.A1732A 0.26 TCGA-BF-AAP0-06 1 35370474 35370474 G A DLGAP3 Missense_Mutation p.R171W 0.10 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP0-06 1 41499657 41499657 G A SCMH1 Missense_Mutation p.P571L 0.15 tolerated(0.19) benign(0.002) TCGA-BF-AAP0-06 1 43296154 43296154 C T ERMAP Missense_Mutation p.S12F 0.10 tolerated_low_confidence(0.67) benign(0.276) TCGA-BF-AAP0-06 1 47395846 47395846 C T CYP4A11 Missense_Mutation p.G501R 0.11 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 1 6196659 6196659 G A CHD5 Silent p.L872L 0.28 TCGA-BF-AAP0-06 1 62293217 62293217 G A INADL Missense_Mutation p.E648K 0.13 deleterious(0) possibly_damaging(0.723) TCGA-BF-AAP0-06 1 62675724 62675724 G A L1TD1 Silent p.E426E 0.15 TCGA-BF-AAP0-06 1 85392399 85392399 C T MCOLN2 Missense_Mutation p.R557K 0.11 tolerated(0.94) benign(0) TCGA-BF-AAP0-06 1 891493 891493 G A NOC2L Nonsense_Mutation p.Q197* 0.10 TCGA-BF-AAP0-06 20 1960904 1960904 G A PDYN 3'UTR 0.14 TCGA-BF-AAP0-06 20 23729752 23729752 C T CST1 Silent p.V81V 0.14 TCGA-BF-AAP0-06 20 25190501 25190501 C T ENTPD6 Silent p.T131T 0.13 TCGA-BF-AAP0-06 20 30730805 30730805 C T TM9SF4 Silent p.L183L 0.10 TCGA-BF-AAP0-06 20 36560122 36560122 C T VSTM2L Silent p.S69S 0.08 TCGA-BF-AAP0-06 20 41306696 41306696 G A PTPRT Silent p.I321I 0.06 TCGA-BF-AAP0-06 20 42169453 42169453 G A L3MBTL1 Missense_Mutation p.E776K 0.09 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP0-06 20 43048516 43048516 G A HNF4A Missense_Mutation p.D298N 0.14 tolerated(0.28) probably_damaging(0.914) TCGA-BF-AAP0-06 20 44672573 44672573 G A SLC12A5 Splice_Site p.X488_splice 0.14 TCGA-BF-AAP0-06 20 44879694 44879695 GG T CDH22 Frame_Shift_Del p.P80Hfs*32 0.20 TCGA-BF-AAP0-06 20 61512764 61512764 G A DIDO1 Missense_Mutation p.S1515L 0.17 probably_damaging(0.997) TCGA-BF-AAP0-06 20 61525037 61525037 G A DIDO1 Missense_Mutation p.P1028S 0.16 benign(0.11) TCGA-BF-AAP0-06 20 61594002 61594002 C T SLC17A9 Missense_Mutation p.S175F 0.13 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP0-06 20 62729810 62729810 C T OPRL1 Silent p.N257N 0.11 TCGA-BF-AAP0-06 21 42080414 42080414 C T DSCAM Silent p.G109G 0.09 TCGA-BF-AAP0-06 21 45387942 45387942 C T AGPAT3 Silent p.F98F 0.11 TCGA-BF-AAP0-06 21 45784023 45784023 C T TRPM2 Missense_Mutation p.T94M 0.26 tolerated(0.13) benign(0.133) TCGA-BF-AAP0-06 21 48022293 48022293 G A S100B Silent p.I12I 0.16 TCGA-BF-AAP0-06 22 17071811 17071811 G A CCT8L2 Missense_Mutation p.P544S 0.10 tolerated_low_confidence(0.36) possibly_damaging(0.454) TCGA-BF-AAP0-06 22 22160238 22160238 G A MAPK1 Silent p.Y131Y 0.06 TCGA-BF-AAP0-06 22 22842128 22842128 G A ZNF280B Silent p.P532P 0.09 TCGA-BF-AAP0-06 22 22842129 22842129 G A ZNF280B Missense_Mutation p.P532L 0.08 tolerated(0.17) benign(0.005) TCGA-BF-AAP0-06 22 29885884 29885884 C T NEFH Missense_Mutation p.S752F 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BF-AAP0-06 22 31532730 31532730 C T PLA2G3 Missense_Mutation p.E419K 0.08 tolerated(0.21) benign(0.175) TCGA-BF-AAP0-06 22 32828441 32828441 G A BPIFC Silent p.F356F 0.12 TCGA-BF-AAP0-06 22 36661273 36661273 G A APOL1 Missense_Mutation p.D147N 0.13 tolerated(0.11) possibly_damaging(0.838) TCGA-BF-AAP0-06 22 37260141 37260141 C T NCF4 Silent p.I29I 0.06 TCGA-BF-AAP0-06 22 39884333 39884333 C T MGAT3 Silent p.V327V 0.15 TCGA-BF-AAP0-06 22 50615444 50615444 G A PANX2 Silent p.T101T 0.16 TCGA-BF-AAP0-06 22 50897936 50897936 G A SBF1 Silent p.V1217V 0.08 TCGA-BF-AAP0-06 2 100906833 100906833 G A LONRF2 Missense_Mutation p.P603S 0.11 tolerated(0.32) benign(0.106) TCGA-BF-AAP0-06 2 102482904 102482904 G A MAP4K4 Missense_Mutation p.R662K 0.12 tolerated_low_confidence(0.89) probably_damaging(0.992) TCGA-BF-AAP0-06 2 103274316 103274316 G A SLC9A2 Missense_Mutation p.E195K 0.15 tolerated(0.45) possibly_damaging(0.558) TCGA-BF-AAP0-06 2 108443494 108443494 G A RGPD4 Missense_Mutation p.E9K 0.25 deleterious(0.01) benign(0.011) TCGA-BF-AAP0-06 2 108994826 108994826 T A SULT1C4 Missense_Mutation p.F11L 0.15 tolerated(1) benign(0) TCGA-BF-AAP0-06 2 111666394 111666394 G A ACOXL Missense_Mutation p.E273K 0.10 tolerated(0.19) benign(0.026) TCGA-BF-AAP0-06 2 112945033 112945033 G A FBLN7 Missense_Mutation p.A424T 0.25 deleterious(0.04) possibly_damaging(0.831) TCGA-BF-AAP0-06 2 118588354 118588354 C T DDX18 3'UTR 0.11 TCGA-BF-AAP0-06 2 120194514 120194514 C T TMEM37 Missense_Mutation p.S24F 0.06 tolerated(0.39) possibly_damaging(0.757) TCGA-BF-AAP0-06 2 121732662 121732662 G A GLI2 Missense_Mutation p.D449N 0.15 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP0-06 2 136566527 136566527 C T LCT Silent p.E1130E 0.07 TCGA-BF-AAP0-06 2 1440092 1440092 C T TPO Missense_Mutation p.P140S 0.12 deleterious(0.04) possibly_damaging(0.52) TCGA-BF-AAP0-06 2 152346999 152346999 C T NEB Missense_Mutation p.R8395Q 0.17 possibly_damaging(0.703) TCGA-BF-AAP0-06 2 152544012 152544012 C T NEB Missense_Mutation p.G853E 0.10 probably_damaging(0.996) TCGA-BF-AAP0-06 2 158287460 158287460 C T CYTIP Silent p.Q98Q 0.08 TCGA-BF-AAP0-06 2 166245496 166245496 G A SCN2A Missense_Mutation p.G1727E 0.16 tolerated(0.18) possibly_damaging(0.783) TCGA-BF-AAP0-06 2 166911190 166911190 C T SCN1A Missense_Mutation p.R187Q 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-BF-AAP0-06 2 167141250 167141250 C T SCN9A Missense_Mutation p.D563N 0.11 deleterious(0.01) benign(0.394) TCGA-BF-AAP0-06 2 168099949 168099949 G A XIRP2 Missense_Mutation p.D683N 0.13 probably_damaging(0.982) TCGA-BF-AAP0-06 2 168105122 168105122 C T XIRP2 Missense_Mutation p.S2407F 0.12 benign(0.178) TCGA-BF-AAP0-06 2 171239669 171239669 C T MYO3B Silent p.P385P 0.12 TCGA-BF-AAP0-06 2 172725199 172725199 G A SLC25A12 Silent p.T67T 0.13 TCGA-BF-AAP0-06 2 172725200 172725200 G A SLC25A12 Missense_Mutation p.T67I 0.13 deleterious(0) possibly_damaging(0.739) TCGA-BF-AAP0-06 2 173861191 173861191 C T RAPGEF4 Intron 0.11 TCGA-BF-AAP0-06 2 179449590 179449590 G A TTN Missense_Mutation p.T21593I 0.12 TCGA-BF-AAP0-06 2 179457584 179457584 C T TTN Silent p.K19754K 0.18 TCGA-BF-AAP0-06 2 179596569 179596569 C T TTN Missense_Mutation p.R5678Q 0.10 TCGA-BF-AAP0-06 2 179604785 179604785 C T TTN Missense_Mutation p.R4392K 0.10 TCGA-BF-AAP0-06 2 179613868 179613868 G A TTN Intron 0.11 TCGA-BF-AAP0-06 2 1906858 1906858 C T MYT1L Missense_Mutation p.D674N 0.14 tolerated(0.12) benign(0.034) TCGA-BF-AAP0-06 2 196673435 196673435 C T DNAH7 Missense_Mutation p.D3352N 0.14 tolerated(0.38) benign(0.008) TCGA-BF-AAP0-06 2 196759856 196759856 C T DNAH7 Missense_Mutation p.M1580I 0.11 tolerated(0.4) benign(0.096) TCGA-BF-AAP0-06 2 197183957 197183957 C T HECW2 Missense_Mutation p.G553S 0.11 tolerated_low_confidence(0.39) benign(0.001) TCGA-BF-AAP0-06 2 203420621 203420621 C T BMPR2 Missense_Mutation p.L745F 0.07 tolerated(0.07) possibly_damaging(0.669) TCGA-BF-AAP0-06 2 21236086 21236086 G A APOB Missense_Mutation p.R1388C 0.05 benign(0.333) TCGA-BF-AAP0-06 2 215278855 215278855 C T VWC2L 5'UTR 0.08 TCGA-BF-AAP0-06 2 216964983 216964983 C T TMEM169 Silent p.I204I 0.16 TCGA-BF-AAP0-06 2 228563904 228563904 G A SLC19A3 Missense_Mutation p.S176F 0.06 deleterious(0) probably_damaging(0.972) TCGA-BF-AAP0-06 2 233399032 233399032 G A CHRND Missense_Mutation p.D451N 0.12 tolerated(0.15) benign(0.097) TCGA-BF-AAP0-06 2 234621899 234621899 G A UGT1A5 Missense_Mutation p.E88K 0.10 tolerated(0.11) benign(0.103) TCGA-BF-AAP0-06 2 24118714 24118714 A T ATAD2B Missense_Mutation p.W115R 0.09 deleterious_low_confidence(0) benign(0.023) TCGA-BF-AAP0-06 2 242035740 242035740 C T MTERFD2 Silent p.R273R 0.12 TCGA-BF-AAP0-06 2 32891782 32891782 C T TTC27 Missense_Mutation p.L296F 0.12 tolerated(0.75) benign(0.001) TCGA-BF-AAP0-06 2 39479027 39479027 C T MAP4K3 Splice_Site p.X848_splice 0.22 TCGA-BF-AAP0-06 2 45829220 45829220 G A SRBD1 Missense_Mutation p.S28L 0.08 tolerated_low_confidence(0.27) benign(0.005) TCGA-BF-AAP0-06 2 49190194 49190194 G A FSHR Missense_Mutation p.S589F 0.12 deleterious(0) probably_damaging(0.963) TCGA-BF-AAP0-06 2 54483096 54483096 C G TSPYL6 Missense_Mutation p.A65P 0.11 tolerated(0.14) benign(0.018) TCGA-BF-AAP0-06 2 70906093 70906093 C T ADD2 Missense_Mutation p.G376S 0.08 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP0-06 2 74273919 74273919 C T TET3 Missense_Mutation p.S157F 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-BF-AAP0-06 3 10354337 10354337 C T SEC13 Missense_Mutation p.R81Q 0.12 deleterious(0.04) benign(0.104) TCGA-BF-AAP0-06 3 108719449 108719449 C T MORC1 Silent p.K714K 0.09 TCGA-BF-AAP0-06 3 108788581 108788581 C T MORC1 Missense_Mutation p.R238K 0.14 deleterious(0.03) benign(0.354) TCGA-BF-AAP0-06 3 111312593 111312593 C T ZBED2 Nonsense_Mutation p.W152* 0.14 TCGA-BF-AAP0-06 3 111312594 111312594 C T ZBED2 Nonsense_Mutation p.W152* 0.15 TCGA-BF-AAP0-06 3 111603551 111603551 G A PHLDB2 Silent p.R209R 0.08 TCGA-BF-AAP0-06 3 120976101 120976101 C T STXBP5L Missense_Mutation p.P585S 0.13 tolerated(0.23) benign(0.014) TCGA-BF-AAP0-06 3 122446748 122446748 G C PARP14 Missense_Mutation p.E1677D 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 3 122447166 122447166 G A PARP14 Missense_Mutation p.G1710R 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP0-06 3 122447224 122447224 G C PARP14 Missense_Mutation p.R1729T 0.07 tolerated(0.07) possibly_damaging(0.548) TCGA-BF-AAP0-06 3 122447321 122447321 G A PARP14 Silent p.K1761K 0.09 TCGA-BF-AAP0-06 3 122447361 122447361 G T PARP14 Missense_Mutation p.D1775Y 0.08 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 3 134911579 134911579 C T EPHB1 Missense_Mutation p.R682C 0.08 deleterious(0) probably_damaging(0.987) TCGA-BF-AAP0-06 3 134960132 134960132 A G EPHB1 Missense_Mutation p.N830S 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP0-06 3 152880840 152880840 C T RAP2B Silent p.L120L 0.22 TCGA-BF-AAP0-06 3 167000083 167000083 C T ZBBX Missense_Mutation p.D733N 0.12 deleterious(0) probably_damaging(0.957) TCGA-BF-AAP0-06 3 168807971 168807971 G A MECOM Missense_Mutation p.S950L 0.13 tolerated(0.32) benign(0.197) TCGA-BF-AAP0-06 3 179051365 179051365 A T ZNF639 Nonsense_Mutation p.K205* 0.13 TCGA-BF-AAP0-06 3 180359811 180359811 C T CCDC39 Missense_Mutation p.R615K 0.13 tolerated(0.6) benign(0.021) TCGA-BF-AAP0-06 3 184099047 184099047 G A CHRD Missense_Mutation p.G93S 0.19 tolerated(0.57) probably_damaging(1) TCGA-BF-AAP0-06 3 186395536 186395536 C T HRG Missense_Mutation p.P481L 0.09 tolerated(0.33) benign(0.113) TCGA-BF-AAP0-06 3 189028292 189028292 G A TPRG1 Missense_Mutation p.M199I 0.08 tolerated(0.07) benign(0.004) TCGA-BF-AAP0-06 3 195516273 195516273 G A MUC4 Silent p.P726P 0.09 TCGA-BF-AAP0-06 3 195516274 195516274 G A MUC4 Missense_Mutation p.P726L 0.09 unknown(0) TCGA-BF-AAP0-06 3 196311148 196311148 G A FBXO45 Missense_Mutation p.E274K 0.16 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP0-06 3 30664742 30664742 G A TGFBR2 Missense_Mutation p.R49K 0.09 tolerated_low_confidence(0.93) benign(0) TCGA-BF-AAP0-06 3 36872547 36872547 C T TRANK1 Missense_Mutation p.E2799K 0.11 tolerated(0.34) benign(0.004) TCGA-BF-AAP0-06 3 36873601 36873601 G A TRANK1 Silent p.F2447F 0.14 TCGA-BF-AAP0-06 3 38647452 38647452 T A SCN5A Missense_Mutation p.K443I 0.08 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 3 38739523 38739523 C T SCN10A Missense_Mutation p.E1730K 0.07 deleterious(0) benign(0.084) TCGA-BF-AAP0-06 3 39230948 39230948 G A XIRP1 5'UTR 0.22 TCGA-BF-AAP0-06 3 39374296 39374296 G A CCR8 Nonsense_Mutation p.W158* 0.12 TCGA-BF-AAP0-06 3 41973449 41973449 G A ULK4 Missense_Mutation p.A143V 0.07 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP0-06 3 44906642 44906642 C T TMEM42 Silent p.T150T 0.12 TCGA-BF-AAP0-06 3 48422293 48422293 G A FBXW12 Silent p.K292K 0.13 TCGA-BF-AAP0-06 3 48422294 48422294 G A FBXW12 Missense_Mutation p.V293M 0.13 tolerated(0.07) benign(0.202) TCGA-BF-AAP0-06 3 48624681 48624681 G A COL7A1 Silent p.S1027S 0.10 TCGA-BF-AAP0-06 3 52417411 52417411 G A DNAH1 Missense_Mutation p.E2651K 0.17 probably_damaging(0.996) TCGA-BF-AAP0-06 3 69230441 69230441 A C FRMD4B Missense_Mutation p.S820R 0.07 deleterious(0.05) benign(0.023) TCGA-BF-AAP0-06 3 87018049 87018049 G A VGLL3 Missense_Mutation p.P210S 0.09 tolerated(0.78) benign(0.03) TCGA-BF-AAP0-06 3 93615455 93615455 A T PROS1 Silent p.V310V 0.11 TCGA-BF-AAP0-06 3 97251245 97251245 G A EPHA6 Silent p.G748G 0.09 TCGA-BF-AAP0-06 3 97356803 97356803 T A EPHA6 Silent p.G887G 0.12 TCGA-BF-AAP0-06 3 97887907 97887907 C T OR5H15 Missense_Mutation p.R122C 0.10 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP0-06 3 98189267 98189267 C T OR5K1 Missense_Mutation p.P283S 0.17 deleterious(0.01) possibly_damaging(0.769) TCGA-BF-AAP0-06 4 106863480 106863480 G A NPNT Missense_Mutation p.M290I 0.08 tolerated(0.25) benign(0.014) TCGA-BF-AAP0-06 4 126371162 126371162 G A FAT4 Silent p.K2997K 0.12 TCGA-BF-AAP0-06 4 144797942 144797942 C T GYPE Missense_Mutation p.G68E 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BF-AAP0-06 4 159789583 159789583 C T FNIP2 Missense_Mutation p.P599S 0.10 tolerated_low_confidence(0.42) benign(0.004) TCGA-BF-AAP0-06 4 162680595 162680595 T A FSTL5 Missense_Mutation p.H232L 0.10 tolerated(0.33) probably_damaging(0.921) TCGA-BF-AAP0-06 4 164507032 164507032 G A MARCH1 Missense_Mutation p.R98C 0.10 tolerated(0.17) probably_damaging(0.953) TCGA-BF-AAP0-06 4 16504236 16504236 T C LDB2 3'UTR 0.06 TCGA-BF-AAP0-06 4 167675685 167675685 C T SPOCK3 Nonsense_Mutation p.W305* 0.11 TCGA-BF-AAP0-06 4 177608663 177608663 C T VEGFC Missense_Mutation p.G275R 0.21 tolerated(0.15) possibly_damaging(0.718) TCGA-BF-AAP0-06 4 184368564 184368564 C T CDKN2AIP Missense_Mutation p.P576L 0.10 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP0-06 4 25258287 25258287 C T PI4K2B Silent p.L249L 0.07 TCGA-BF-AAP0-06 4 40351260 40351260 A C CHRNA9 Missense_Mutation p.N243H 0.11 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 4 40440712 40440712 G A RBM47 Missense_Mutation p.P67S 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAP0-06 4 41621431 41621431 C T LIMCH1 Silent p.S303S 0.14 TCGA-BF-AAP0-06 4 436895 436895 A C ZNF721 Missense_Mutation p.F454C 0.16 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP0-06 4 46305530 46305530 G A GABRA2 Missense_Mutation p.S268F 0.13 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP0-06 4 47427989 47427989 C T GABRB1 Missense_Mutation p.T460I 0.06 tolerated(0.12) benign(0.052) TCGA-BF-AAP0-06 4 47427990 47427990 C A GABRB1 Silent p.T460T 0.06 TCGA-BF-AAP0-06 4 47559850 47559850 G A ATP10D Missense_Mutation p.R665Q 0.07 tolerated(0.1) probably_damaging(0.934) TCGA-BF-AAP0-06 4 49046859 49046859 G A CWH43 Silent p.L620L 0.11 TCGA-BF-AAP0-06 4 68930597 68930597 C T TMPRSS11F Missense_Mutation p.R274Q 0.10 tolerated(0.13) possibly_damaging(0.528) TCGA-BF-AAP0-06 4 7714494 7714494 G A SORCS2 Missense_Mutation p.E635K 0.11 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 5 102433183 102433183 T C GIN1 Silent p.K281K 0.14 TCGA-BF-AAP0-06 5 128362989 128362989 C T SLC27A6 Silent p.F473F 0.07 TCGA-BF-AAP0-06 5 135651349 135651349 C T TRPC7 Nonsense_Mutation p.W300* 0.19 TCGA-BF-AAP0-06 5 137680575 137680575 C T FAM53C Silent p.N66N 0.21 TCGA-BF-AAP0-06 5 140165879 140165879 G A PCDHA1 Missense_Mutation p.V2M 0.10 tolerated_low_confidence(0.12) benign(0.013) TCGA-BF-AAP0-06 5 140209543 140209543 C T PCDHA6 Missense_Mutation p.R623C 0.14 deleterious_low_confidence(0) benign(0.385) TCGA-BF-AAP0-06 5 140220987 140220987 G A PCDHA8 Silent p.G27G 0.14 TCGA-BF-AAP0-06 5 140590159 140590159 C T PCDHB12 Silent p.F560F 0.13 TCGA-BF-AAP0-06 5 140741481 140741481 G A PCDHGB2 Silent p.A593A 0.18 TCGA-BF-AAP0-06 5 140789125 140789125 C T PCDHGB6 Silent p.F452F 0.11 TCGA-BF-AAP0-06 5 154251333 154251333 C T CNOT8 Missense_Mutation p.R173C 0.17 tolerated(0.07) possibly_damaging(0.86) TCGA-BF-AAP0-06 5 154394617 154394617 G A KIF4B Missense_Mutation p.E400K 0.11 tolerated(0.16) benign(0.027) TCGA-BF-AAP0-06 5 160721205 160721205 C T GABRB2 Silent p.L474L 0.14 TCGA-BF-AAP0-06 5 161116676 161116676 G A GABRA6 Nonsense_Mutation p.W188* 0.14 TCGA-BF-AAP0-06 5 171509381 171509381 C T STK10 Silent p.Q646Q 0.18 TCGA-BF-AAP0-06 5 23527534 23527534 G A PRDM9 Silent p.R779R 0.07 TCGA-BF-AAP0-06 5 26906080 26906080 G A CDH9 Nonsense_Mutation p.R267* 0.11 TCGA-BF-AAP0-06 5 36629560 36629560 C T SLC1A3 Missense_Mutation p.L64F 0.15 tolerated(0.06) probably_damaging(0.984) TCGA-BF-AAP0-06 5 39135050 39135050 C T FYB Missense_Mutation p.E538K 0.15 deleterious(0) probably_damaging(0.971) TCGA-BF-AAP0-06 5 59940689 59940689 G A DEPDC1B Missense_Mutation p.L198F 0.17 deleterious(0) benign(0.157) TCGA-BF-AAP0-06 5 60188859 60188859 G A ERCC8 Intron 0.19 TCGA-BF-AAP0-06 5 6599901 6599901 G A NSUN2 3'UTR 0.33 TCGA-BF-AAP0-06 5 66460649 66460649 G A MAST4 Missense_Mutation p.R1881Q 0.12 benign(0.3) TCGA-BF-AAP0-06 5 76645380 76645380 G A PDE8B Missense_Mutation p.G338E 0.09 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP0-06 5 7743835 7743835 C T ADCY2 Silent p.I642I 0.11 TCGA-BF-AAP0-06 5 79854488 79854488 G A ANKRD34B Missense_Mutation p.P451S 0.07 deleterious(0) possibly_damaging(0.856) TCGA-BF-AAP0-06 6 102307343 102307343 G A GRIK2 Missense_Mutation p.G500E 0.13 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 6 105606603 105606603 A T POPDC3 Missense_Mutation p.D206E 0.10 tolerated(0.23) benign(0.253) TCGA-BF-AAP0-06 6 10586810 10586810 C T GCNT2 Intron 0.13 TCGA-BF-AAP0-06 6 110714413 110714413 G A DDO Silent p.F225F 0.11 TCGA-BF-AAP0-06 6 112015690 112015690 G A FYN Silent p.I387I 0.10 TCGA-BF-AAP0-06 6 114274567 114274567 G A HDAC2 Silent p.V171V 0.11 TCGA-BF-AAP0-06 6 116442891 116442891 C T COL10A1 Missense_Mutation p.G130R 0.16 deleterious(0) unknown(0) TCGA-BF-AAP0-06 6 116938357 116938357 G A RSPH4A Missense_Mutation p.D191N 0.09 tolerated(0.12) benign(0.014) TCGA-BF-AAP0-06 6 129634091 129634091 G A LAMA2 Missense_Mutation p.G1087D 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 6 130505715 130505715 G A SAMD3 Missense_Mutation p.S146F 0.12 deleterious(0) probably_damaging(0.933) TCGA-BF-AAP0-06 6 130763060 130763060 C T TMEM200A 3'UTR 0.12 TCGA-BF-AAP0-06 6 133849917 133849917 C T EYA4 Nonsense_Mutation p.Q632* 0.09 TCGA-BF-AAP0-06 6 136599171 136599171 C T BCLAF1 Missense_Mutation p.R283Q 0.09 tolerated(0.17) benign(0.417) TCGA-BF-AAP0-06 6 139094853 139094854 - AAGG CCDC28A Frame_Shift_Ins p.A16Efs*19 0.17 TCGA-BF-AAP0-06 6 139170527 139170527 G A ECT2L Missense_Mutation p.G342E 0.10 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 6 150164189 150164189 C T LRP11 Silent p.T281T 0.14 TCGA-BF-AAP0-06 6 152776699 152776699 C T SYNE1 Nonsense_Mutation p.W918* 0.07 TCGA-BF-AAP0-06 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.10 TCGA-BF-AAP0-06 6 161127455 161127455 G A PLG Silent p.L22L 0.09 TCGA-BF-AAP0-06 6 24301973 24301973 T A DCDC2 Missense_Mutation p.K176I 0.11 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP0-06 6 28501836 28501836 C T GPX5 Silent p.F186F 0.10 TCGA-BF-AAP0-06 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.13 tolerated_low_confidence(0.09) benign(0.04) TCGA-BF-AAP0-06 6 31557699 31557699 G A NCR3 Missense_Mutation p.S83F 0.10 tolerated(0.1) benign(0.058) TCGA-BF-AAP0-06 6 31922631 31922631 G A NELFE Missense_Mutation p.P148L 0.10 deleterious_low_confidence(0.02) benign(0.277) TCGA-BF-AAP0-06 6 31922632 31922632 G A NELFE Missense_Mutation p.P148S 0.10 tolerated_low_confidence(0.1) benign(0.157) TCGA-BF-AAP0-06 6 32187952 32187952 G A NOTCH4 Silent p.G423G 0.11 TCGA-BF-AAP0-06 6 33286888 33286888 G A DAXX Silent p.S683S 0.13 TCGA-BF-AAP0-06 6 33766893 33766893 C T MLN Missense_Mutation p.E75K 0.09 tolerated(0.68) benign(0.002) TCGA-BF-AAP0-06 6 38796005 38796005 G A DNAH8 Missense_Mutation p.E1160K 0.11 benign(0.022) TCGA-BF-AAP0-06 6 39874291 39874291 C T MOCS1 3'UTR 0.09 TCGA-BF-AAP0-06 6 42902298 42902298 C T CNPY3 Silent p.I79I 0.13 TCGA-BF-AAP0-06 6 47649203 47649203 G A GPR111 Missense_Mutation p.G303E 0.18 tolerated(0.46) benign(0.036) TCGA-BF-AAP0-06 6 52343840 52343840 C T EFHC1 Silent p.S428S 0.11 TCGA-BF-AAP0-06 6 54173335 54173335 C T TINAG 5'UTR 0.19 TCGA-BF-AAP0-06 6 55196536 55196536 G A GFRAL Missense_Mutation p.E16K 0.12 tolerated(0.42) benign(0.003) TCGA-BF-AAP0-06 6 57472420 57472420 C T PRIM2 3'UTR 0.12 TCGA-BF-AAP0-06 6 62688028 62688028 C G KHDRBS2 Silent p.G142G 0.09 TCGA-BF-AAP0-06 6 6305713 6305713 C T F13A1 Missense_Mutation p.D64N 0.15 tolerated(0.05) benign(0.121) TCGA-BF-AAP0-06 6 76072470 76072470 G A FILIP1 Missense_Mutation p.P147L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 6 87969747 87969747 C T ZNF292 Missense_Mutation p.H2134Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 6 94068003 94068003 G A EPHA7 Missense_Mutation p.P320L 0.16 tolerated(0.2) benign(0.001) TCGA-BF-AAP0-06 7 100551995 100551995 C T MUC3A Missense_Mutation p.S249F 0.10 deleterious(0) possibly_damaging(0.831) TCGA-BF-AAP0-06 7 100552410 100552410 G A MUC3A Missense_Mutation p.M387I 0.13 tolerated(0.49) benign(0.027) TCGA-BF-AAP0-06 7 100685928 100685928 C T MUC17 Missense_Mutation p.S3744F 0.06 benign(0.04) TCGA-BF-AAP0-06 7 103126765 103126765 C T RELN Missense_Mutation p.G3288S 0.51 deleterious(0) possibly_damaging(0.756) TCGA-BF-AAP0-06 7 106523485 106523485 C T PIK3CG Silent p.I879I 0.07 TCGA-BF-AAP0-06 7 107431590 107431590 C T SLC26A3 Missense_Mutation p.G158E 0.46 tolerated(0.27) benign(0) TCGA-BF-AAP0-06 7 107431591 107431591 C T SLC26A3 Missense_Mutation p.G158R 0.46 tolerated(0.11) benign(0.021) TCGA-BF-AAP0-06 7 117176670 117176670 C T CFTR Missense_Mutation p.S271F 0.10 deleterious(0.04) possibly_damaging(0.765) TCGA-BF-AAP0-06 7 117424495 117424495 G A CTTNBP2 Silent p.S694S 0.15 TCGA-BF-AAP0-06 7 122839998 122839998 C T SLC13A1 Translation_Start_Site p.M1? 0.27 deleterious(0.01) possibly_damaging(0.775) TCGA-BF-AAP0-06 7 128478778 128478778 G A FLNC Missense_Mutation p.M444I 0.16 tolerated(0.24) benign(0.011) TCGA-BF-AAP0-06 7 128493007 128493007 G A FLNC Missense_Mutation p.V2044M 0.39 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 7 131096128 131096128 C T MKLN1 Missense_Mutation p.P256L 0.43 deleterious(0) benign(0.389) TCGA-BF-AAP0-06 7 131878834 131878834 A G PLXNA4 Missense_Mutation p.L948P 0.30 tolerated(0.21) benign(0.024) TCGA-BF-AAP0-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-BF-AAP0-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.45 deleterious(0) possibly_damaging(0.838) TCGA-BF-AAP0-06 7 142606717 142606717 G A TRPV5 Silent p.L612L 0.09 TCGA-BF-AAP0-06 7 143657279 143657279 C T OR2F1 Silent p.S72S 0.06 TCGA-BF-AAP0-06 7 143884117 143884117 C T ARHGEF35 Missense_Mutation p.E454K 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-BF-AAP0-06 7 150069883 150069883 C T REPIN1 Missense_Mutation p.P575L 0.06 tolerated(0.15) probably_damaging(1) TCGA-BF-AAP0-06 7 150325330 150325330 G A GIMAP6 Missense_Mutation p.S119F 0.24 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP0-06 7 150440279 150440279 C T GIMAP5 3'UTR 0.46 TCGA-BF-AAP0-06 7 150936744 150936744 T C SMARCD3 Missense_Mutation p.Q421R 0.07 tolerated(0.11) benign(0.101) TCGA-BF-AAP0-06 7 155094496 155094496 C T INSIG1 Silent p.L248L 0.11 TCGA-BF-AAP0-06 7 20197913 20197913 C T MACC1 Missense_Mutation p.E691K 0.25 deleterious(0) possibly_damaging(0.713) TCGA-BF-AAP0-06 7 21723552 21723552 C T DNAH11 Silent p.L1878L 0.08 TCGA-BF-AAP0-06 7 2987328 2987328 C T CARD11 Missense_Mutation p.S34N 0.10 tolerated(0.05) possibly_damaging(0.854) TCGA-BF-AAP0-06 7 31015404 31015404 C T GHRHR Missense_Mutation p.L299F 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-BF-AAP0-06 7 35130058 35130058 C T DPY19L2P1 RNA 0.26 TCGA-BF-AAP0-06 7 41729516 41729516 C T INHBA Nonsense_Mutation p.W338* 0.19 TCGA-BF-AAP0-06 7 41729653 41729653 G A INHBA Silent p.F292F 0.10 TCGA-BF-AAP0-06 7 44247088 44247088 C T YKT6 Silent p.Y130Y 0.17 TCGA-BF-AAP0-06 7 50022980 50022980 C T ZPBP Missense_Mutation p.G307R 0.08 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 7 550608 550608 C T PDGFA Silent p.K97K 0.27 TCGA-BF-AAP0-06 7 550609 550609 T A PDGFA Missense_Mutation p.K97M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 7 5540565 5540565 C G FBXL18 Silent p.P445P 0.27 TCGA-BF-AAP0-06 7 64126596 64126596 C T ZNF107 5'UTR 0.17 TCGA-BF-AAP0-06 7 64126597 64126597 C T ZNF107 5'UTR 0.16 TCGA-BF-AAP0-06 7 7420436 7420436 C T COL28A1 Missense_Mutation p.E755K 0.09 deleterious(0.05) benign(0.41) TCGA-BF-AAP0-06 7 7571062 7571062 G A COL28A1 Missense_Mutation p.R200C 0.22 deleterious(0) probably_damaging(0.93) TCGA-BF-AAP0-06 7 82455927 82455927 G A PCLO Missense_Mutation p.S4798L 0.12 unknown(0) TCGA-BF-AAP0-06 7 82545715 82545715 C T PCLO Missense_Mutation p.E3863K 0.18 unknown(0) TCGA-BF-AAP0-06 7 82584437 82584437 C T PCLO Silent p.E1944E 0.19 TCGA-BF-AAP0-06 7 86468831 86468831 C T GRM3 Silent p.A667A 0.08 TCGA-BF-AAP0-06 7 86493775 86493775 T A GRM3 3'UTR 0.21 TCGA-BF-AAP0-06 7 86824473 86824473 A T DMTF1 3'UTR 0.20 TCGA-BF-AAP0-06 7 87797534 87797534 G A ADAM22 Nonsense_Mutation p.W758* 0.22 TCGA-BF-AAP0-06 7 93098056 93098056 C T CALCR Silent p.V182V 0.14 TCGA-BF-AAP0-06 8 105361495 105361495 G A DCSTAMP Missense_Mutation p.G239S 0.19 tolerated(0.8) benign(0.027) TCGA-BF-AAP0-06 8 124204149 124204149 G A FAM83A Missense_Mutation p.G196E 0.12 tolerated(0.47) benign(0.086) TCGA-BF-AAP0-06 8 125597391 125597391 C T MTSS1 Missense_Mutation p.A133T 0.12 deleterious(0) benign(0.221) TCGA-BF-AAP0-06 8 133142095 133142095 G A KCNQ3 Missense_Mutation p.S678F 0.12 tolerated(0.48) benign(0.309) TCGA-BF-AAP0-06 8 133829778 133829778 C T PHF20L1 Missense_Mutation p.P523S 0.14 tolerated(0.12) benign(0) TCGA-BF-AAP0-06 8 143961010 143961010 C T CYP11B1 Missense_Mutation p.E74K 0.16 tolerated(0.11) probably_damaging(1) TCGA-BF-AAP0-06 8 18079652 18079652 C T NAT1 Silent p.I94I 0.18 TCGA-BF-AAP0-06 8 24333953 24333953 G A ADAM7 Missense_Mutation p.R214K 0.09 tolerated(0.82) possibly_damaging(0.606) TCGA-BF-AAP0-06 8 27145625 27145625 G A TRIM35 Silent p.P308P 0.12 TCGA-BF-AAP0-06 8 30701112 30701112 G A TEX15 Missense_Mutation p.L1808F 0.13 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP0-06 8 39604096 39604096 A T ADAM2 Missense_Mutation p.F690Y 0.19 tolerated(0.18) benign(0.045) TCGA-BF-AAP0-06 8 39607255 39607255 C T ADAM2 Silent p.R602R 0.12 TCGA-BF-AAP0-06 8 39695672 39695672 G A ADAM2 Silent p.L11L 0.17 TCGA-BF-AAP0-06 8 39871114 39871114 G A IDO2 Silent p.G263G 0.17 TCGA-BF-AAP0-06 8 42045470 42045470 G A PLAT Silent p.F106F 0.10 TCGA-BF-AAP0-06 8 42611549 42611549 G A CHRNA6 Missense_Mutation p.P265S 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 8 55542243 55542243 G A RP1 Missense_Mutation p.G1934E 0.09 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 8 61765653 61765653 C T CHD7 Silent p.S2123S 0.13 TCGA-BF-AAP0-06 8 82667692 82667692 G A CHMP4C Silent p.R152R 0.15 TCGA-BF-AAP0-06 8 85774592 85774592 C T RALYL Missense_Mutation p.P172S 0.13 tolerated(0.35) benign(0.09) TCGA-BF-AAP0-06 8 89339324 89339324 C T MMP16 Missense_Mutation p.E38K 0.20 tolerated(0.1) benign(0.037) TCGA-BF-AAP0-06 8 99030342 99030342 G A MATN2 Missense_Mutation p.R606Q 0.12 tolerated(0.29) benign(0.006) TCGA-BF-AAP0-06 9 107379657 107379657 C T OR13C9 Missense_Mutation p.D277N 0.16 deleterious(0.03) benign(0.061) TCGA-BF-AAP0-06 9 121971200 121971200 C T BRINP1 Missense_Mutation p.M314I 0.17 tolerated(0.13) benign(0.003) TCGA-BF-AAP0-06 9 34339161 34339161 A G NUDT2 Missense_Mutation p.K42E 0.15 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 9 406968 406968 C T DOCK8 Silent p.I1143I 0.13 TCGA-BF-AAP0-06 9 79323949 79323949 C T PRUNE2 Missense_Mutation p.D1081N 0.14 tolerated(0.41) benign(0.119) TCGA-BF-AAP0-06 X 100183389 100183389 G A XKRX 5'UTR 0.07 TCGA-BF-AAP0-06 X 100880447 100880447 C T ARMCX3 Missense_Mutation p.R160C 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP0-06 X 10098088 10098088 C T WWC3 Missense_Mutation p.S842F 0.12 deleterious(0.03) possibly_damaging(0.522) TCGA-BF-AAP0-06 X 105450669 105450669 G A MUM1L1 Missense_Mutation p.R415Q 0.15 tolerated(0.25) benign(0.086) TCGA-BF-AAP0-06 X 106390982 106390982 G A NUP62CL 3'UTR 0.09 TCGA-BF-AAP0-06 X 109247233 109247233 G A TMEM164 Silent p.E77E 0.15 TCGA-BF-AAP0-06 X 109459820 109459820 C T AMMECR1 Missense_Mutation p.E209K 0.10 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP0-06 X 117033079 117033079 T A KLHL13 Missense_Mutation p.N590I 0.11 tolerated(0.08) possibly_damaging(0.712) TCGA-BF-AAP0-06 X 119004993 119004993 C T RNF113A Nonsense_Mutation p.W195* 0.10 TCGA-BF-AAP0-06 X 119389023 119389023 C T ZBTB33 Missense_Mutation p.R585C 0.14 deleterious(0) possibly_damaging(0.863) TCGA-BF-AAP0-06 X 119739392 119739392 G A MCTS1 Missense_Mutation p.D49N 0.12 tolerated(0.09) benign(0.027) TCGA-BF-AAP0-06 X 123504057 123504057 G A SH2D1A Missense_Mutation p.R78Q 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-BF-AAP0-06 X 123775709 123775709 C T TENM1 Missense_Mutation p.G670E 0.12 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP0-06 X 129370217 129370217 G A ZNF280C Missense_Mutation p.L248F 0.10 deleterious(0.04) benign(0.077) TCGA-BF-AAP0-06 X 134680690 134680690 G A DDX26B Missense_Mutation p.D165N 0.09 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP0-06 X 134992212 134992212 C T SAGE1 Missense_Mutation p.H583Y 0.18 tolerated(0.23) possibly_damaging(0.888) TCGA-BF-AAP0-06 X 135047121 135047121 A T MMGT1 3'UTR 0.11 TCGA-BF-AAP0-06 X 135428517 135428517 T A GPR112 Silent p.V884V 0.09 TCGA-BF-AAP0-06 X 140985027 140985027 C T MAGEC3 Missense_Mutation p.P495S 0.14 tolerated(0.07) probably_damaging(0.977) TCGA-BF-AAP0-06 X 140994732 140994732 C T MAGEC1 Silent p.L514L 0.13 TCGA-BF-AAP0-06 X 141291321 141291321 G A MAGEC2 Silent p.F151F 0.11 TCGA-BF-AAP0-06 X 149901109 149901109 A G MTMR1 Silent p.E321E 0.09 TCGA-BF-AAP0-06 X 151128310 151128310 C T GABRE Splice_Site p.X262_splice 0.08 TCGA-BF-AAP0-06 X 153224938 153224938 G A HCFC1 Silent p.V483V 0.12 TCGA-BF-AAP0-06 X 153880576 153880576 G A CTAG2 Missense_Mutation p.A200V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-BF-AAP0-06 X 153927573 153927573 C T GAB3 Silent p.R447R 0.10 TCGA-BF-AAP0-06 X 154132263 154132263 G A F8 Silent p.I1972I 0.12 TCGA-BF-AAP0-06 X 154464622 154464622 G A VBP1 Missense_Mutation p.R166Q 0.09 tolerated(0.07) benign(0.064) TCGA-BF-AAP0-06 X 155127884 155127884 G A VAMP7 Missense_Mutation p.E105K 0.10 deleterious(0) probably_damaging(0.975) TCGA-BF-AAP0-06 X 1584587 1584587 C T P2RY8 Missense_Mutation p.D289N 0.10 deleterious(0.03) probably_damaging(0.94) TCGA-BF-AAP0-06 X 18323229 18323229 T C SCML2 Missense_Mutation p.K198R 0.13 tolerated(1) benign(0.011) TCGA-BF-AAP0-06 X 18671558 18671558 C T CDKL5 Missense_Mutation p.S996F 0.14 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-BF-AAP0-06 X 19983641 19983641 C T CXorf23 Silent p.E265E 0.07 TCGA-BF-AAP0-06 X 21670658 21670658 C T CNKSR2 3'UTR 0.11 TCGA-BF-AAP0-06 X 31496287 31496287 C T DMD Missense_Mutation p.G2958E 0.23 probably_damaging(0.969) TCGA-BF-AAP0-06 X 3241413 3241413 T C MXRA5 Missense_Mutation p.I771M 0.10 deleterious(0) possibly_damaging(0.879) TCGA-BF-AAP0-06 X 33357373 33357373 T C DMD Intron 0.13 TCGA-BF-AAP0-06 X 35820652 35820652 C T MAGEB16 Silent p.L113L 0.13 TCGA-BF-AAP0-06 X 36162851 36162851 T C CHDC2 Silent p.F478F 0.14 TCGA-BF-AAP0-06 X 39930238 39930238 C T BCOR Missense_Mutation p.E1076K 0.12 deleterious(0.01) benign(0.029) TCGA-BF-AAP0-06 X 47307277 47307277 C T ZNF41 Missense_Mutation p.G631E 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP0-06 X 53561044 53561044 C A HUWE1 Missense_Mutation p.G4316C 0.10 unknown(0) TCGA-BF-AAP0-06 X 601743 601743 T C SHOX Missense_Mutation p.L185S 0.11 deleterious(0.05) probably_damaging(0.913) TCGA-BF-AAP0-06 X 70339875 70339875 C T MED12 Silent p.F136F 0.13 TCGA-BF-AAP0-06 X 76814248 76814248 T C ATRX Silent p.V2132V 0.08 TCGA-BF-AAP0-06 X 77155057 77155057 C T COX7B Missense_Mutation p.P3S 0.13 tolerated(0.18) benign(0.099) TCGA-BF-AAP0-06 X 77158199 77158199 C T COX7B Missense_Mutation p.H34Y 0.09 deleterious(0.02) benign(0.327) TCGA-BF-AAP0-06 X 79938091 79938091 C T BRWD3 Missense_Mutation p.E1424K 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP0-06 X 99849278 99849278 C T TNMD Silent p.F114F 0.16 TCGA-BF-AAP1-01 10 101292915 101292915 C T NKX2-3 Silent p.S9S 0.93 TCGA-BF-AAP1-01 10 102265248 102265248 G A SEC31B Missense_Mutation p.S350F 0.80 deleterious(0.01) benign(0.114) TCGA-BF-AAP1-01 10 106737218 106737218 G A SORCS3 Silent p.E307E 0.79 TCGA-BF-AAP1-01 10 115377303 115377303 G A NRAP Missense_Mutation p.R962C 0.87 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 10 118320000 118320000 G A PNLIP Missense_Mutation p.G378E 0.84 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.81 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 10 124711517 124711517 T A C10orf88 Nonsense_Mutation p.K132* 0.54 TCGA-BF-AAP1-01 10 127585183 127585183 C T FANK1 5'UTR 0.29 TCGA-BF-AAP1-01 10 127737878 127737878 C T ADAM12 Missense_Mutation p.D624N 0.80 tolerated(0.06) benign(0.44) TCGA-BF-AAP1-01 10 129690880 129690880 G A CLRN3 Missense_Mutation p.R57C 0.83 deleterious(0) probably_damaging(0.913) TCGA-BF-AAP1-01 10 20466300 20466300 G A PLXDC2 Silent p.Q341Q 0.82 TCGA-BF-AAP1-01 10 23257418 23257418 C T ARMC3 Missense_Mutation p.P306S 0.80 tolerated(1) benign(0.007) TCGA-BF-AAP1-01 10 35456535 35456535 C T CREM Intron 0.78 TCGA-BF-AAP1-01 10 37430903 37430903 G A ANKRD30A Missense_Mutation p.E304K 0.85 tolerated(1) possibly_damaging(0.636) TCGA-BF-AAP1-01 10 37520441 37520441 G A ANKRD30A 3'UTR 0.61 TCGA-BF-AAP1-01 10 48370999 48370999 G A ZNF488 Missense_Mutation p.R156Q 0.76 tolerated(0.27) benign(0.109) TCGA-BF-AAP1-01 10 49663123 49663123 G A ARHGAP22 Silent p.L254L 0.83 TCGA-BF-AAP1-01 10 50954015 50954015 G A OGDHL Silent p.F435F 0.76 TCGA-BF-AAP1-01 10 55581577 55581577 A G PCDH15 3'UTR 0.76 TCGA-BF-AAP1-01 10 68381477 68381477 G A CTNNA3 Silent p.A449A 0.60 TCGA-BF-AAP1-01 10 75187897 75187897 G A MSS51 Missense_Mutation p.S49F 0.89 tolerated(0.06) benign(0.005) TCGA-BF-AAP1-01 10 81053127 81053127 C T ZMIZ1 Intron 0.81 TCGA-BF-AAP1-01 10 82185724 82185724 C T FAM213A Nonsense_Mutation p.Q125* 0.69 TCGA-BF-AAP1-01 10 84733631 84733631 C A NRG3 Missense_Mutation p.P458T 0.54 tolerated(0.74) benign(0.009) TCGA-BF-AAP1-01 10 87898629 87898629 G A GRID1 Missense_Mutation p.R225C 0.83 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP1-01 10 95931025 95931025 T A PLCE1 Silent p.P527P 0.78 TCGA-BF-AAP1-01 10 95931026 95931026 C T PLCE1 Missense_Mutation p.L528F 0.78 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 10 96612659 96612659 C T CYP2C19 Silent p.F487F 0.83 TCGA-BF-AAP1-01 10 96709038 96709038 G A CYP2C9 Silent p.E272E 0.85 TCGA-BF-AAP1-01 11 101765749 101765749 C T ANGPTL5 Silent p.Q236Q 0.76 TCGA-BF-AAP1-01 11 107501142 107501142 G A ELMOD1 Splice_Site p.X6_splice 0.67 TCGA-BF-AAP1-01 11 113780017 113780017 G A HTR3B Missense_Mutation p.G18E 0.78 tolerated(0.08) benign(0.018) TCGA-BF-AAP1-01 11 116692204 116692204 G A APOA4 Silent p.I190I 0.78 TCGA-BF-AAP1-01 11 118984928 118984928 C T C2CD2L Silent p.L589L 0.80 TCGA-BF-AAP1-01 11 121461796 121461796 G A SORL1 Missense_Mutation p.D1434N 0.81 tolerated(0.98) benign(0.003) TCGA-BF-AAP1-01 11 121492954 121492954 G A SORL1 Missense_Mutation p.E2050K 0.77 deleterious(0.04) possibly_damaging(0.777) TCGA-BF-AAP1-01 11 122665445 122665445 C T UBASH3B Missense_Mutation p.S339F 0.31 deleterious(0.03) benign(0.223) TCGA-BF-AAP1-01 11 12281379 12281379 G A MICAL2 Missense_Mutation p.R1090K 0.58 tolerated_low_confidence(0.48) benign(0.044) TCGA-BF-AAP1-01 11 122928979 122928979 T C HSPA8 Missense_Mutation p.N579S 0.85 tolerated_low_confidence(1) benign(0.005) TCGA-BF-AAP1-01 11 124252311 124252311 C T OR8B2 Missense_Mutation p.R310K 0.85 tolerated_low_confidence(0.11) benign(0.002) TCGA-BF-AAP1-01 11 124310578 124310578 G A OR8B8 Missense_Mutation p.T135I 0.95 tolerated_low_confidence(0.19) benign(0.016) TCGA-BF-AAP1-01 11 130343253 130343253 C T ADAMTS15 Missense_Mutation p.S797F 0.74 deleterious(0.01) benign(0.443) TCGA-BF-AAP1-01 11 132399058 132399058 G A OPCML Silent p.I141I 0.79 TCGA-BF-AAP1-01 11 16812598 16812598 C T PLEKHA7 Missense_Mutation p.R965Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP1-01 11 17112912 17112912 C T PIK3C2A Missense_Mutation p.R1616Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 11 17554935 17554935 G A USH1C Intron 0.67 TCGA-BF-AAP1-01 11 18231485 18231485 G A RP11-113D6.10 Missense_Mutation p.G91R 0.49 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 11 20127272 20127272 C T NAV2 Silent p.I2339I 0.44 TCGA-BF-AAP1-01 11 20636270 20636270 C T SLC6A5 Missense_Mutation p.S344L 0.36 tolerated(0.17) benign(0.051) TCGA-BF-AAP1-01 11 22364842 22364842 C T SLC17A6 Missense_Mutation p.S130F 0.31 deleterious(0) probably_damaging(0.927) TCGA-BF-AAP1-01 11 22397582 22397582 G A SLC17A6 Missense_Mutation p.G410E 0.37 tolerated(0.13) benign(0.021) TCGA-BF-AAP1-01 11 2356962 2356962 G A CD81-AS1 Intron 0.54 TCGA-BF-AAP1-01 11 27679455 27679455 G A BDNF Silent p.T301T 0.36 TCGA-BF-AAP1-01 11 284305 284305 G A NLRP6 Silent p.T759T 0.15 TCGA-BF-AAP1-01 11 31099445 31099445 C T DCDC1 Nonsense_Mutation p.W755* 0.44 TCGA-BF-AAP1-01 11 31823138 31823138 C T PAX6 Missense_Mutation p.G124R 0.46 deleterious(0.03) possibly_damaging(0.487) TCGA-BF-AAP1-01 11 40136798 40136798 A T LRRC4C Missense_Mutation p.F349I 0.63 tolerated(0.13) benign(0.019) TCGA-BF-AAP1-01 11 44129493 44129493 C T EXT2 Silent p.I110I 0.53 TCGA-BF-AAP1-01 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.31 TCGA-BF-AAP1-01 11 47296474 47296474 C T MADD Silent p.S141S 0.23 TCGA-BF-AAP1-01 11 4869632 4869632 G A OR51S1 Silent p.N269N 0.59 TCGA-BF-AAP1-01 11 4870058 4870058 G A OR51S1 Silent p.S127S 0.63 TCGA-BF-AAP1-01 11 4928908 4928908 C T OR51A7 Silent p.F103F 0.28 TCGA-BF-AAP1-01 11 5080576 5080576 G A OR52E2 Silent p.I94I 0.38 TCGA-BF-AAP1-01 11 51412236 51412236 C T OR4A5 Missense_Mutation p.G54S 0.21 tolerated_low_confidence(0.07) benign(0.022) TCGA-BF-AAP1-01 11 5142422 5142422 C T OR52A4 RNA 0.42 TCGA-BF-AAP1-01 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-BF-AAP1-01 11 5322392 5322392 C T OR51B4 Missense_Mutation p.G262E 0.40 deleterious(0.01) possibly_damaging(0.798) TCGA-BF-AAP1-01 11 5410645 5410645 C T OR51M1 Missense_Mutation p.S6L 0.56 tolerated_low_confidence(0.42) benign(0.001) TCGA-BF-AAP1-01 11 5411348 5411348 G A OR51M1 Silent p.L240L 0.49 TCGA-BF-AAP1-01 11 55135482 55135482 C T OR4A15 Silent p.I41I 0.60 TCGA-BF-AAP1-01 11 55340152 55340152 G A OR4C16 Silent p.L183L 0.34 TCGA-BF-AAP1-01 11 55541823 55541823 G A OR5D13 Missense_Mutation p.E304K 0.48 tolerated(0.28) benign(0) TCGA-BF-AAP1-01 11 55587343 55587343 C T OR5D18 Missense_Mutation p.P80S 0.48 deleterious(0.01) probably_damaging(0.957) TCGA-BF-AAP1-01 11 56000342 56000342 G A OR5T2 Missense_Mutation p.S107F 0.69 tolerated(1) benign(0.003) TCGA-BF-AAP1-01 11 56757247 56757247 C T OR5AK2 Missense_Mutation p.P287S 0.59 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 11 57971255 57971255 G A OR1S2 Silent p.F133F 0.53 TCGA-BF-AAP1-01 11 57971256 57971256 A T OR1S2 Missense_Mutation p.F133Y 0.53 tolerated(1) benign(0) TCGA-BF-AAP1-01 11 58377444 58377444 C T ZFP91 Missense_Mutation p.S171F 0.23 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-BF-AAP1-01 11 58607023 58607023 G A GLYATL2 Silent p.I21I 0.49 TCGA-BF-AAP1-01 11 58723265 58723265 C T GLYATL1 Missense_Mutation p.P256L 0.29 tolerated(0.05) benign(0.312) TCGA-BF-AAP1-01 11 58746779 58746779 C T RP11-142C4.6 RNA 0.14 TCGA-BF-AAP1-01 11 60183015 60183015 G A MS4A14 Missense_Mutation p.D225N 0.19 tolerated(0.22) benign(0.105) TCGA-BF-AAP1-01 11 6024060 6024060 C T OR56A4 Missense_Mutation p.E107K 0.33 deleterious(0.01) possibly_damaging(0.775) TCGA-BF-AAP1-01 11 60615435 60615435 C T CCDC86 Missense_Mutation p.S266L 0.29 deleterious(0) possibly_damaging(0.814) TCGA-BF-AAP1-01 11 61584076 61584076 T C FADS1 Missense_Mutation p.H109R 0.64 deleterious(0) possibly_damaging(0.888) TCGA-BF-AAP1-01 11 6190912 6190912 G A OR52B2 Silent p.L215L 0.62 TCGA-BF-AAP1-01 11 62289331 62289331 T C AHNAK Silent p.L4186L 0.27 TCGA-BF-AAP1-01 11 62295335 62295335 G A AHNAK Missense_Mutation p.S2185F 0.51 probably_damaging(0.999) TCGA-BF-AAP1-01 11 6233032 6233032 G A FAM160A2 Missense_Mutation p.R889W 0.31 deleterious(0) probably_damaging(0.944) TCGA-BF-AAP1-01 11 62519724 62519724 C T ZBTB3 Silent p.K521K 0.16 TCGA-BF-AAP1-01 11 65787839 65787839 C T CATSPER1 Silent p.V671V 0.25 TCGA-BF-AAP1-01 11 66062085 66062085 G A TMEM151A Missense_Mutation p.R123Q 0.42 tolerated(0.05) benign(0.011) TCGA-BF-AAP1-01 11 66062086 66062086 G A TMEM151A Silent p.R123R 0.36 TCGA-BF-AAP1-01 11 6630604 6630604 G A ILK Silent p.K231K 0.26 TCGA-BF-AAP1-01 11 66982819 66982819 C T KDM2A Silent p.F165F 0.57 TCGA-BF-AAP1-01 11 68514685 68514685 G A MTL5 Silent p.S207S 0.56 TCGA-BF-AAP1-01 11 6867001 6867001 C T OR10A5 Silent p.L30L 0.53 TCGA-BF-AAP1-01 11 69949218 69949218 A G ANO1 Missense_Mutation p.N163S 0.87 tolerated(0.3) benign(0.003) TCGA-BF-AAP1-01 11 75160063 75160063 C T GDPD5 Missense_Mutation p.G225S 0.78 tolerated(0.05) possibly_damaging(0.838) TCGA-BF-AAP1-01 11 75431206 75431206 C T MOGAT2 Silent p.F87F 0.56 TCGA-BF-AAP1-01 11 75509424 75509424 C T DGAT2 Missense_Mutation p.S321F 0.41 tolerated(0.15) benign(0.048) TCGA-BF-AAP1-01 11 76255712 76255712 C T C11orf30 Missense_Mutation p.P1040L 0.64 deleterious_low_confidence(0.01) benign(0.184) TCGA-BF-AAP1-01 11 76917166 76917166 G A MYO7A Silent p.P1887P 0.38 TCGA-BF-AAP1-01 11 77404608 77404608 G A RSF1 Missense_Mutation p.R922C 0.72 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 11 78423702 78423702 G A TENM4 Silent p.F1293F 0.29 TCGA-BF-AAP1-01 11 7846800 7846800 G A OR5P3 Silent p.T240T 0.24 TCGA-BF-AAP1-01 11 8161740 8161740 C T RIC3 Missense_Mutation p.G42E 0.31 tolerated(0.05) probably_damaging(0.998) TCGA-BF-AAP1-01 11 92570857 92570857 C T FAT3 Missense_Mutation p.A3418V 0.20 probably_damaging(0.971) TCGA-BF-AAP1-01 11 92616271 92616271 G A FAT3 Missense_Mutation p.D4217N 0.30 benign(0.063) TCGA-BF-AAP1-01 11 93808337 93808337 C T HEPHL1 Intron 0.58 TCGA-BF-AAP1-01 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.65 tolerated(0.09) possibly_damaging(0.653) TCGA-BF-AAP1-01 12 100646172 100646172 C T DEPDC4 3'UTR 0.47 TCGA-BF-AAP1-01 12 101555763 101555763 C T SLC5A8 Missense_Mutation p.S540N 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 12 108686176 108686176 G A CMKLR1 Silent p.S188S 0.57 TCGA-BF-AAP1-01 12 109665262 109665262 C T ACACB Silent p.F1323F 0.52 TCGA-BF-AAP1-01 12 111088070 111088070 A C HVCN1 Missense_Mutation p.V220G 0.40 deleterious(0) benign(0.403) TCGA-BF-AAP1-01 12 11150145 11150145 G A TAS2R20 Silent p.I110I 0.40 TCGA-BF-AAP1-01 12 113603662 113603662 G A DDX54 Silent p.S530S 0.44 TCGA-BF-AAP1-01 12 113737531 113737531 G A SLC8B1 3'UTR 0.33 TCGA-BF-AAP1-01 12 117768165 117768165 C T NOS1 Missense_Mutation p.G237E 0.43 tolerated_low_confidence(1) benign(0) TCGA-BF-AAP1-01 12 118469093 118469093 G A RFC5 3'UTR 0.41 TCGA-BF-AAP1-01 12 122966128 122966128 G A ZCCHC8 Missense_Mutation p.P320L 0.45 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 12 124305127 124305127 G A DNAH10 Missense_Mutation p.G1216E 0.23 probably_damaging(0.977) TCGA-BF-AAP1-01 12 124326030 124326030 G A DNAH10 Missense_Mutation p.M1648I 0.47 probably_damaging(0.998) TCGA-BF-AAP1-01 12 124408388 124408388 A G DNAH10 Missense_Mutation p.Q3744R 0.65 benign(0.002) TCGA-BF-AAP1-01 12 124408389 124408389 A C DNAH10 Missense_Mutation p.Q3744H 0.67 benign(0.005) TCGA-BF-AAP1-01 12 125834822 125834822 G A TMEM132B Missense_Mutation p.E293K 0.43 tolerated(0.23) benign(0.384) TCGA-BF-AAP1-01 12 126138374 126138374 C T TMEM132B Silent p.V785V 0.31 TCGA-BF-AAP1-01 12 129694173 129694173 C T TMEM132D Silent p.G445G 0.49 TCGA-BF-AAP1-01 12 133212534 133212534 G A POLE Missense_Mutation p.P1919S 0.36 tolerated(0.67) benign(0.034) TCGA-BF-AAP1-01 12 13716914 13716914 C T GRIN2B Silent p.K1086K 0.41 TCGA-BF-AAP1-01 12 14018819 14018819 G A GRIN2B Silent p.I108I 0.34 TCGA-BF-AAP1-01 12 14577467 14577467 T C ATF7IP Silent p.S206S 0.39 TCGA-BF-AAP1-01 12 14613781 14613781 C T ATF7IP Silent p.S837S 0.44 TCGA-BF-AAP1-01 12 21008029 21008029 C T LST3 Missense_Mutation p.S51F 0.44 deleterious(0.02) probably_damaging(0.985) TCGA-BF-AAP1-01 12 21015351 21015351 G T SLCO1B3 Missense_Mutation p.V163L 0.15 tolerated(0.07) benign(0.005) TCGA-BF-AAP1-01 12 2929310 2929310 C T ITFG2 Silent p.F155F 0.32 TCGA-BF-AAP1-01 12 32481193 32481193 C T BICD1 Missense_Mutation p.P602S 0.18 tolerated(0.39) probably_damaging(0.985) TCGA-BF-AAP1-01 12 40728880 40728880 C T LRRK2 Missense_Mutation p.R1957C 0.50 deleterious(0.03) probably_damaging(0.94) TCGA-BF-AAP1-01 12 41414136 41414136 C T CNTN1 Intron 0.45 TCGA-BF-AAP1-01 12 42835381 42835381 C T PPHLN1 Intron 0.38 TCGA-BF-AAP1-01 12 44915937 44915937 C T NELL2 Missense_Mutation p.R724Q 0.39 tolerated(0.06) probably_damaging(0.986) TCGA-BF-AAP1-01 12 45429888 45429888 T C DBX2 Missense_Mutation p.K138R 0.19 deleterious(0.02) possibly_damaging(0.821) TCGA-BF-AAP1-01 12 45567931 45567931 G A PLEKHA8P1 RNA 0.45 TCGA-BF-AAP1-01 12 4702171 4702171 C T DYRK4 Missense_Mutation p.A41V 0.40 tolerated(0.16) possibly_damaging(0.452) TCGA-BF-AAP1-01 12 49412648 49412648 G A PRKAG1 5'Flank 0.57 TCGA-BF-AAP1-01 12 49888600 49888600 C T SPATS2 Missense_Mutation p.S114F 0.37 deleterious(0.01) probably_damaging(0.975) TCGA-BF-AAP1-01 12 5020664 5020664 G A KCNA1 Silent p.V40V 0.50 TCGA-BF-AAP1-01 12 51754524 51754524 T A GALNT6 Missense_Mutation p.N383I 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 12 51899668 51899668 G A SLC4A8 Missense_Mutation p.V1075I 0.44 tolerated(0.47) benign(0.192) TCGA-BF-AAP1-01 12 52639232 52639232 G A KRT7 Missense_Mutation p.E341K 0.52 deleterious(0) possibly_damaging(0.497) TCGA-BF-AAP1-01 12 52882278 52882278 G A KRT6A Missense_Mutation p.L420F 0.52 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP1-01 12 52884717 52884717 C T KRT6A Missense_Mutation p.M279I 0.37 deleterious(0.02) possibly_damaging(0.449) TCGA-BF-AAP1-01 12 52967357 52967357 G A KRT74 Missense_Mutation p.R69W 0.41 tolerated(0.18) benign(0.009) TCGA-BF-AAP1-01 12 53494493 53494493 C T IGFBP6 Intron 0.49 TCGA-BF-AAP1-01 12 54936426 54936426 G A NCKAP1L Missense_Mutation p.R1114Q 0.42 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP1-01 12 56346933 56346933 G A DGKA Silent p.E684E 0.46 TCGA-BF-AAP1-01 12 57440668 57440668 G T MYO1A Missense_Mutation p.L174I 0.08 tolerated(0.26) benign(0.091) TCGA-BF-AAP1-01 12 57578672 57578672 C T LRP1 Silent p.I2079I 0.46 TCGA-BF-AAP1-01 12 70150370 70150370 G A RAB3IP Missense_Mutation p.R162Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 12 71029486 71029486 C T PTPRB Missense_Mutation p.G139E 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BF-AAP1-01 12 72366333 72366333 G A TPH2 Missense_Mutation p.E215K 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-BF-AAP1-01 12 7635336 7635336 G A CD163 Silent p.S1050S 0.32 TCGA-BF-AAP1-01 12 7640523 7640523 G A CD163 Silent p.I527I 0.45 TCGA-BF-AAP1-01 12 78598756 78598756 G A NAV3 Nonsense_Mutation p.W2270* 0.35 TCGA-BF-AAP1-01 12 86373235 86373235 C T MGAT4C Silent p.R423R 0.71 TCGA-BF-AAP1-01 12 96052770 96052770 A G NTN4 3'UTR 0.54 TCGA-BF-AAP1-01 13 100617588 100617588 G A ZIC5 3'UTR 0.35 TCGA-BF-AAP1-01 13 115067281 115067281 C T UPF3A Silent p.Y361Y 0.39 TCGA-BF-AAP1-01 13 19751322 19751322 G A TUBA3C Silent p.F267F 0.77 TCGA-BF-AAP1-01 13 21364636 21364636 G A XPO4 Silent p.L961L 0.76 TCGA-BF-AAP1-01 13 21751449 21751449 T G MRP63 3'UTR 0.75 TCGA-BF-AAP1-01 13 27333056 27333056 G A GPR12 Silent p.F303F 0.30 TCGA-BF-AAP1-01 13 28597582 28597582 C T FLT3 Missense_Mutation p.E775K 0.56 deleterious(0.03) benign(0.41) TCGA-BF-AAP1-01 13 32731407 32731407 C T FRY Intron 0.29 TCGA-BF-AAP1-01 13 36242548 36242548 G A NBEA Missense_Mutation p.G2881E 0.55 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP1-01 13 42245259 42245259 G A VWA8 Silent p.T1478T 0.54 TCGA-BF-AAP1-01 13 42739558 42739558 C G DGKH Missense_Mutation p.T316S 0.42 deleterious(0.02) benign(0.183) TCGA-BF-AAP1-01 13 84454352 84454352 C A SLITRK1 Missense_Mutation p.D431Y 0.36 deleterious(0) benign(0.176) TCGA-BF-AAP1-01 13 84454829 84454829 G A SLITRK1 Missense_Mutation p.P272S 0.37 tolerated(0.54) benign(0) TCGA-BF-AAP1-01 13 86369551 86369551 G A SLITRK6 Missense_Mutation p.P365S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP1-01 13 96622465 96622465 A G UGGT2 Silent p.N412N 0.39 TCGA-BF-AAP1-01 14 101447363 101447363 G A SNORD114-20 RNA 0.34 TCGA-BF-AAP1-01 14 101447364 101447364 G A SNORD114-20 RNA 0.34 TCGA-BF-AAP1-01 14 102792570 102792570 G A ZNF839 Silent p.Q179Q 0.38 TCGA-BF-AAP1-01 14 104263795 104263795 G A PPP1R13B Missense_Mutation p.P24S 0.40 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 14 105639378 105639378 G A NUDT14 Missense_Mutation p.P217S 0.50 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 14 107095208 107095208 G A IGHV4-61 Missense_Mutation p.S91L 0.33 deleterious(0.01) benign(0.062) TCGA-BF-AAP1-01 14 107282865 107282865 G A IGHV7-81 Missense_Mutation p.T93I 0.43 deleterious(0.02) probably_damaging(0.951) TCGA-BF-AAP1-01 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.41 deleterious(0.01) possibly_damaging(0.461) TCGA-BF-AAP1-01 14 20002247 20002247 C T POTEM Missense_Mutation p.G392E 0.20 tolerated(0.18) possibly_damaging(0.656) TCGA-BF-AAP1-01 14 20692860 20692860 G A OR11H6 Silent p.%3D 0.50 TCGA-BF-AAP1-01 14 21250208 21250208 G A RNASE6 Missense_Mutation p.S117N 0.46 deleterious(0.04) benign(0.063) TCGA-BF-AAP1-01 14 22314856 22314856 C T TRAV8-2 5'UTR 0.57 TCGA-BF-AAP1-01 14 22315166 22315166 G A TRAV8-2 Missense_Mutation p.G35E 0.42 tolerated(0.2) benign(0.203) TCGA-BF-AAP1-01 14 22564822 22564822 G A TRDV1 Silent p.A91A 0.43 TCGA-BF-AAP1-01 14 22591491 22591491 C T TRAV26-1 Silent p.L3L 0.48 TCGA-BF-AAP1-01 14 22616487 22616487 G A TRAV27 Silent p.L76L 0.44 TCGA-BF-AAP1-01 14 22675923 22675923 G A TRAV34 Missense_Mutation p.E79K 0.52 tolerated(0.51) benign(0.027) TCGA-BF-AAP1-01 14 23249172 23249172 G A SLC7A7 Silent p.I196I 0.36 TCGA-BF-AAP1-01 14 23863532 23863532 C T MYH6 Silent p.R810R 0.37 TCGA-BF-AAP1-01 14 23884635 23884635 C T MYH7 Silent p.Q1746Q 0.42 TCGA-BF-AAP1-01 14 24886451 24886451 C T NYNRIN Silent p.V1832V 0.34 TCGA-BF-AAP1-01 14 33165275 33165275 G A AKAP6 Missense_Mutation p.D987N 0.44 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 14 37203727 37203727 T G SLC25A21 Silent p.P85P 0.53 TCGA-BF-AAP1-01 14 39764173 39764173 G A CTAGE5 Silent p.L209L 0.43 TCGA-BF-AAP1-01 14 44976216 44976216 C T FSCB 5'UTR 0.48 TCGA-BF-AAP1-01 14 52507446 52507446 C T NID2 Missense_Mutation p.G650D 0.43 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 14 59950992 59950992 G A L3HYPDH Missense_Mutation p.P15S 0.38 tolerated_low_confidence(0.25) benign(0.001) TCGA-BF-AAP1-01 14 63246535 63246535 C T KCNH5 Missense_Mutation p.E644K 0.40 deleterious(0) possibly_damaging(0.504) TCGA-BF-AAP1-01 14 64461881 64461881 C T SYNE2 Silent p.I967I 0.15 TCGA-BF-AAP1-01 14 69805444 69805444 G A GALNT16 Silent p.R348R 0.48 TCGA-BF-AAP1-01 14 70989373 70989373 G A ADAM20 Missense_Mutation p.P751L 0.33 tolerated(0.69) benign(0) TCGA-BF-AAP1-01 14 72125097 72125097 G A SIPA1L1 Missense_Mutation p.E681K 0.35 deleterious(0) possibly_damaging(0.589) TCGA-BF-AAP1-01 14 73198512 73198512 T C DPF3 Intron 0.24 TCGA-BF-AAP1-01 14 73437640 73437640 G A ZFYVE1 Missense_Mutation p.H762Y 0.41 tolerated(0.29) benign(0.173) TCGA-BF-AAP1-01 14 86088038 86088038 G A FLRT2 Silent p.G60G 0.48 TCGA-BF-AAP1-01 14 88658580 88658580 C T KCNK10 Missense_Mutation p.D286N 0.47 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 14 88737127 88737127 C T KCNK10 Intron 0.41 TCGA-BF-AAP1-01 14 88946336 88946336 G A PTPN21 Missense_Mutation p.S480L 0.46 tolerated(0.09) benign(0.439) TCGA-BF-AAP1-01 14 92058264 92058264 G A CATSPERB Missense_Mutation p.A931V 0.40 tolerated(0.11) possibly_damaging(0.638) TCGA-BF-AAP1-01 14 92195768 92195768 G A CATSPERB Missense_Mutation p.S19L 0.43 tolerated(0.22) benign(0.006) TCGA-BF-AAP1-01 14 94582165 94582165 A G IFI27 Missense_Mutation p.T54A 0.32 deleterious(0.02) benign(0.013) TCGA-BF-AAP1-01 14 95033446 95033446 C T SERPINA4 Silent p.C263C 0.37 TCGA-BF-AAP1-01 14 95033448 95033448 C T SERPINA4 Missense_Mutation p.S264L 0.37 tolerated(0.66) benign(0.04) TCGA-BF-AAP1-01 14 95054048 95054048 G A SERPINA5 Missense_Mutation p.E117K 0.38 tolerated(0.62) benign(0.026) TCGA-BF-AAP1-01 14 95085540 95085540 G A SERPINA3 Missense_Mutation p.E218K 0.47 tolerated(1) benign(0.003) TCGA-BF-AAP1-01 14 96795847 96795847 G A ATG2B Missense_Mutation p.H619Y 0.26 tolerated(0.69) possibly_damaging(0.885) TCGA-BF-AAP1-01 14 96953291 96953291 A G AK7 Silent p.S677S 0.52 TCGA-BF-AAP1-01 15 100943022 100943022 C T CERS3 Missense_Mutation p.E350K 0.35 tolerated(0.22) benign(0.012) TCGA-BF-AAP1-01 15 23811689 23811689 C T MKRN3 Missense_Mutation p.R254C 0.49 deleterious(0.04) possibly_damaging(0.642) TCGA-BF-AAP1-01 15 23932061 23932061 C T NDN Missense_Mutation p.A102T 0.42 tolerated(0.14) probably_damaging(0.997) TCGA-BF-AAP1-01 15 24923552 24923552 G A NPAP1 Silent p.E846E 0.49 TCGA-BF-AAP1-01 15 25468395 25468395 G A SNORD115-29 RNA 0.42 TCGA-BF-AAP1-01 15 25476025 25476025 G A SNORD115-33 RNA 0.37 TCGA-BF-AAP1-01 15 31779410 31779410 G A OTUD7A Missense_Mutation p.P446L 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP1-01 15 33023059 33023059 G A GREM1 Silent p.R56R 0.39 TCGA-BF-AAP1-01 15 34015006 34015006 G A RYR3 Missense_Mutation p.G2237E 0.42 probably_damaging(1) TCGA-BF-AAP1-01 15 34030685 34030685 A T RYR3 Missense_Mutation p.Y2517F 0.48 probably_damaging(0.998) TCGA-BF-AAP1-01 15 34040696 34040696 G A RYR3 Missense_Mutation p.D2722N 0.48 possibly_damaging(0.805) TCGA-BF-AAP1-01 15 35084436 35084436 G A ACTC1 Silent p.V221V 0.50 TCGA-BF-AAP1-01 15 39880895 39880895 C T THBS1 Missense_Mutation p.P547L 0.33 deleterious(0) possibly_damaging(0.895) TCGA-BF-AAP1-01 15 42446564 42446564 C T PLA2G4F Missense_Mutation p.E93K 0.44 tolerated(0.3) benign(0.127) TCGA-BF-AAP1-01 15 42702694 42702694 G A CAPN3 Silent p.Q728Q 0.33 TCGA-BF-AAP1-01 15 43489523 43489523 C T EPB42 Missense_Mutation p.V715I 0.27 tolerated(0.23) benign(0.105) TCGA-BF-AAP1-01 15 43572064 43572064 G A TGM7 Silent p.L479L 0.32 TCGA-BF-AAP1-01 15 44913978 44913978 G A SPG11 Missense_Mutation p.L867F 0.34 deleterious(0.03) probably_damaging(0.934) TCGA-BF-AAP1-01 15 45047129 45047129 C T TRIM69 Missense_Mutation p.P13L 0.37 tolerated_low_confidence(0.18) benign(0.002) TCGA-BF-AAP1-01 15 45556929 45556929 G A SLC28A2 Missense_Mutation p.G222E 0.48 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 15 50935716 50935716 A C TRPM7 Missense_Mutation p.V119G 0.50 tolerated(0.54) benign(0.01) TCGA-BF-AAP1-01 15 51504546 51504546 C T CYP19A1 Missense_Mutation p.E412K 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP1-01 15 51856362 51856362 G A DMXL2 Missense_Mutation p.P154S 0.47 tolerated(0.68) benign(0.02) TCGA-BF-AAP1-01 15 52506889 52506889 T C MYO5C Splice_Site p.X1319_splice 0.41 TCGA-BF-AAP1-01 15 57544625 57544625 C T TCF12 Nonsense_Mutation p.R399* 0.45 TCGA-BF-AAP1-01 15 57967210 57967210 G T GCOM1 Missense_Mutation p.Q416H 0.48 deleterious(0) possibly_damaging(0.464) TCGA-BF-AAP1-01 15 58476424 58476424 G A AQP9 3'UTR 0.41 TCGA-BF-AAP1-01 15 58834821 58834821 G A LIPC Missense_Mutation p.G182D 0.38 tolerated(0.2) benign(0.02) TCGA-BF-AAP1-01 15 59323653 59323653 C T RNF111 Missense_Mutation p.P211L 0.43 tolerated_low_confidence(0.67) benign(0.108) TCGA-BF-AAP1-01 15 62209733 62209733 A T VPS13C Missense_Mutation p.V2621D 0.47 tolerated(0.09) probably_damaging(0.993) TCGA-BF-AAP1-01 15 63866540 63866540 C T USP3 Missense_Mutation p.P345L 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-BF-AAP1-01 15 65412264 65412264 C T PDCD7 Silent p.E346E 0.43 TCGA-BF-AAP1-01 15 66220865 66220865 C T MEGF11 Missense_Mutation p.D525N 0.25 deleterious(0.05) benign(0.066) TCGA-BF-AAP1-01 15 66729156 66729156 A G MAP2K1 Missense_Mutation p.N122D 0.46 deleterious(0.04) probably_damaging(0.995) TCGA-BF-AAP1-01 15 71341765 71341765 G A LRRC49 Silent p.K630K 0.48 TCGA-BF-AAP1-01 15 74911680 74911680 G A CLK3 Missense_Mutation p.R196Q 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-BF-AAP1-01 15 75969085 75969085 G A CSPG4 Silent p.A1925A 0.48 TCGA-BF-AAP1-01 15 79324609 79324609 G A RASGRF1 Silent p.F336F 0.43 TCGA-BF-AAP1-01 15 80478544 80478544 C T FAH Missense_Mutation p.P418L 0.37 deleterious_low_confidence(0) benign(0.221) TCGA-BF-AAP1-01 15 83455638 83455638 C T FSD2 Missense_Mutation p.E169K 0.44 tolerated(0.21) probably_damaging(0.998) TCGA-BF-AAP1-01 15 84539640 84539640 G A ADAMTSL3 Missense_Mutation p.E297K 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-BF-AAP1-01 15 86807525 86807525 G A AGBL1 Missense_Mutation p.E329K 0.33 tolerated(0.12) benign(0.007) TCGA-BF-AAP1-01 15 86808022 86808022 C T AGBL1 Silent p.P494P 0.42 TCGA-BF-AAP1-01 15 89738713 89738713 C T ABHD2 3'UTR 0.67 TCGA-BF-AAP1-01 15 89738714 89738714 C T ABHD2 3'UTR 0.67 TCGA-BF-AAP1-01 15 89865078 89865078 G A POLG Silent p.P829P 0.40 TCGA-BF-AAP1-01 15 89867082 89867082 G A POLG Silent p.N707N 0.39 TCGA-BF-AAP1-01 15 91493753 91493753 C T UNC45A Silent p.L737L 0.48 TCGA-BF-AAP1-01 15 94983410 94983410 T A MCTP2 Missense_Mutation p.F697L 0.38 deleterious(0.03) benign(0.279) TCGA-BF-AAP1-01 15 96877651 96877651 C T NR2F2 Silent p.P263P 0.49 TCGA-BF-AAP1-01 15 99678323 99678323 C T TTC23 Silent p.K412K 0.39 TCGA-BF-AAP1-01 16 10531981 10531981 G A ATF7IP2 Silent p.E328E 0.41 TCGA-BF-AAP1-01 16 10769948 10769948 C T TEKT5 Silent p.E318E 0.47 TCGA-BF-AAP1-01 16 11000729 11000729 G A CIITA Silent p.G460G 0.41 TCGA-BF-AAP1-01 16 113690 113690 C A RHBDF1 Missense_Mutation p.Q119H 0.07 deleterious(0.02) possibly_damaging(0.828) TCGA-BF-AAP1-01 16 11650370 11650370 G A LITAF Missense_Mutation p.P73S 0.44 tolerated(0.08) benign(0.013) TCGA-BF-AAP1-01 16 1261773 1261773 G A CACNA1H Missense_Mutation p.D1512N 0.45 tolerated(0.31) probably_damaging(0.999) TCGA-BF-AAP1-01 16 1278676 1278676 G A TPSB2 Missense_Mutation p.H267Y 0.31 tolerated(0.5) benign(0.007) TCGA-BF-AAP1-01 16 14989997 14989997 C T NOMO1 3'UTR 0.19 TCGA-BF-AAP1-01 16 17221703 17221703 G A XYLT1 Silent p.G681G 0.46 TCGA-BF-AAP1-01 16 18804660 18804660 G A ARL6IP1 Nonsense_Mutation p.Q176* 0.39 TCGA-BF-AAP1-01 16 19070800 19070800 G T TMC7 Missense_Mutation p.R697L 0.45 deleterious(0) benign(0.188) TCGA-BF-AAP1-01 16 20043742 20043742 C T GPR139 Missense_Mutation p.R126K 0.47 deleterious(0) probably_damaging(0.987) TCGA-BF-AAP1-01 16 20548615 20548615 C T ACSM2B Missense_Mutation p.E567K 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 16 20635471 20635471 C T ACSM1 Missense_Mutation p.E532K 0.54 deleterious(0) benign(0.41) TCGA-BF-AAP1-01 16 20944756 20944756 C T DNAH3 Missense_Mutation p.G4024D 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 16 20944757 20944757 C T DNAH3 Missense_Mutation p.G4024S 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 16 20998666 20998666 C T DNAH3 Silent p.K2329K 0.46 TCGA-BF-AAP1-01 16 21049091 21049091 G A DNAH3 Silent p.L1648L 0.30 TCGA-BF-AAP1-01 16 21636256 21636256 C T METTL9 Missense_Mutation p.L191F 0.32 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 16 24920276 24920276 G A SLC5A11 Silent p.Q503Q 0.34 TCGA-BF-AAP1-01 16 2503467 2503467 C T CCNF Silent p.D548D 0.38 TCGA-BF-AAP1-01 16 25255288 25255288 G A ZKSCAN2 Missense_Mutation p.S600L 0.38 tolerated(0.18) benign(0.002) TCGA-BF-AAP1-01 16 27472860 27472860 G A GTF3C1 Silent p.I2047I 0.27 TCGA-BF-AAP1-01 16 2816914 2816914 C T SRRM2 Missense_Mutation p.R2129C 0.42 probably_damaging(0.997) TCGA-BF-AAP1-01 16 29997050 29997050 C T TAOK2 Silent p.L620L 0.50 TCGA-BF-AAP1-01 16 30128493 30128493 G A MAPK3 Missense_Mutation p.P297S 0.40 deleterious(0.02) benign(0.046) TCGA-BF-AAP1-01 16 30507887 30507887 G A ITGAL Missense_Mutation p.S611N 0.48 tolerated(0.18) benign(0.103) TCGA-BF-AAP1-01 16 3119093 3119093 G A IL32 Missense_Mutation p.E102K 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-BF-AAP1-01 16 31766745 31766745 C T ZNF720 Intron 0.38 TCGA-BF-AAP1-01 16 48261781 48261781 G A ABCC11 Missense_Mutation p.R111C 0.40 tolerated(0.13) benign(0.022) TCGA-BF-AAP1-01 16 5141827 5141827 C T FAM86A Missense_Mutation p.E104K 0.40 deleterious(0.01) possibly_damaging(0.701) TCGA-BF-AAP1-01 16 57608901 57608901 C T GPR114 Silent p.G461G 0.40 TCGA-BF-AAP1-01 16 66945153 66945153 G A CDH16 Missense_Mutation p.T619I 0.48 tolerated(0.25) benign(0.011) TCGA-BF-AAP1-01 16 66997508 66997508 G A CES3 Silent p.E134E 0.38 TCGA-BF-AAP1-01 16 67000763 67000763 C T CES3 Missense_Mutation p.P353S 0.40 deleterious(0.04) probably_damaging(0.984) TCGA-BF-AAP1-01 16 67472708 67472708 G A ATP6V0D1 Silent p.F294F 0.48 TCGA-BF-AAP1-01 16 67978824 67978824 G A SLC12A4 Silent p.F1061F 0.48 TCGA-BF-AAP1-01 16 68200849 68200849 C T NFATC3 Missense_Mutation p.R569C 0.38 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 16 69385642 69385642 G T TMED6 Silent p.L5L 0.40 TCGA-BF-AAP1-01 16 70954598 70954598 C T HYDIN Missense_Mutation p.E2561K 0.53 benign(0) TCGA-BF-AAP1-01 16 71004501 71004501 C T HYDIN Silent p.V1847V 0.38 TCGA-BF-AAP1-01 16 74419277 74419277 G A NPIPB15 Missense_Mutation p.G96E 0.19 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-BF-AAP1-01 16 74922103 74922103 G A WDR59 Silent p.N770N 0.40 TCGA-BF-AAP1-01 16 7703869 7703869 G A RBFOX1 Silent p.A290A 0.50 TCGA-BF-AAP1-01 16 84229200 84229200 C T ADAD2 Silent p.L399L 0.50 TCGA-BF-AAP1-01 16 84229641 84229641 C T ADAD2 Missense_Mutation p.L507F 0.51 deleterious(0.03) possibly_damaging(0.621) TCGA-BF-AAP1-01 16 89774906 89774906 G A VPS9D1 Silent p.F577F 0.25 TCGA-BF-AAP1-01 16 90021614 90021614 C T DEF8 Silent p.F115F 0.43 TCGA-BF-AAP1-01 16 929573 929573 G A LMF1 Silent p.F298F 0.32 TCGA-BF-AAP1-01 17 10432204 10432204 C T MYH2 Missense_Mutation p.D1183N 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-BF-AAP1-01 17 12618853 12618853 G A MYOCD Missense_Mutation p.E47K 0.52 tolerated(0.14) benign(0.075) TCGA-BF-AAP1-01 17 16456239 16456239 C T ZNF287 Missense_Mutation p.R406K 0.35 tolerated(0.62) benign(0.005) TCGA-BF-AAP1-01 17 16612155 16612155 G C CCDC144A Missense_Mutation p.D262H 0.21 deleterious(0) probably_damaging(0.953) TCGA-BF-AAP1-01 17 1674354 1674354 C A SERPINF1 Missense_Mutation p.H105Q 0.36 tolerated(0.28) benign(0.017) TCGA-BF-AAP1-01 17 1674355 1674355 C T SERPINF1 Missense_Mutation p.R106W 0.38 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP1-01 17 171079 171079 C T RPH3AL Missense_Mutation p.E69K 0.46 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 17 2203398 2203398 C T SMG6 Missense_Mutation p.G217R 0.50 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-BF-AAP1-01 17 26652558 26652558 G A TMEM97 Silent p.K52K 0.55 TCGA-BF-AAP1-01 17 27014432 27014432 G A SUPT6H Silent p.Q983Q 0.30 TCGA-BF-AAP1-01 17 3030174 3030174 G A OR1G1 Silent p.T224T 0.52 TCGA-BF-AAP1-01 17 33289200 33289200 G T ZNF830 Silent p.L205L 0.34 TCGA-BF-AAP1-01 17 33690215 33690215 G A SLFN11 Silent p.I204I 0.50 TCGA-BF-AAP1-01 17 34036263 34036263 C T AP2B1 Silent p.I825I 0.58 TCGA-BF-AAP1-01 17 34072550 34072550 G A GAS2L2 Nonsense_Mutation p.Q656* 0.66 TCGA-BF-AAP1-01 17 34245297 34245297 G A RDM1 3'UTR 0.67 TCGA-BF-AAP1-01 17 34854008 34854008 G A ZNHIT3 3'Flank 0.56 TCGA-BF-AAP1-01 17 36091639 36091639 G A HNF1B Missense_Mutation p.S331F 0.67 deleterious(0.02) possibly_damaging(0.701) TCGA-BF-AAP1-01 17 3664340 3664340 C T ITGAE Missense_Mutation p.E189K 0.52 tolerated(0.31) benign(0.002) TCGA-BF-AAP1-01 17 37186246 37186246 G A CTD-2206N4.2 5'Flank 0.28 TCGA-BF-AAP1-01 17 38447782 38447782 C T CDC6 Silent p.A174A 0.43 TCGA-BF-AAP1-01 17 3924447 3924447 A G ZZEF1 Silent p.D2460D 0.31 TCGA-BF-AAP1-01 17 39537414 39537414 C T KRT34 Missense_Mutation p.S203N 0.23 deleterious(0) benign(0.1) TCGA-BF-AAP1-01 17 42226344 42226344 C T C17orf53 Silent p.T391T 0.19 TCGA-BF-AAP1-01 17 42636159 42636159 A G FZD2 Missense_Mutation p.N368S 0.75 tolerated(0.09) benign(0.3) TCGA-BF-AAP1-01 17 43345030 43345030 G A MAP3K14-AS1 RNA 0.29 TCGA-BF-AAP1-01 17 44248481 44248481 C T KANSL1 Silent p.Q343Q 0.11 TCGA-BF-AAP1-01 17 44953712 44953712 G A WNT9B Silent p.T234T 0.25 TCGA-BF-AAP1-01 17 44953713 44953713 G A WNT9B Missense_Mutation p.G235S 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 17 47218803 47218803 G A B4GALNT2 Missense_Mutation p.G130E 0.52 tolerated(0.06) benign(0.317) TCGA-BF-AAP1-01 17 48704128 48704128 C T CACNA1G 3'UTR 0.25 TCGA-BF-AAP1-01 17 51900733 51900733 G A KIF2B Silent p.T113T 0.54 TCGA-BF-AAP1-01 17 51901958 51901958 C T KIF2B Missense_Mutation p.P522S 0.61 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 17 56247082 56247082 G A OR4D2 Silent p.E22E 0.49 TCGA-BF-AAP1-01 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.66 TCGA-BF-AAP1-01 17 56350193 56350193 C T MPO Missense_Mutation p.E570K 0.52 deleterious(0.02) possibly_damaging(0.89) TCGA-BF-AAP1-01 17 59093117 59093117 C G BCAS3 Missense_Mutation p.L498V 0.46 tolerated(0.42) benign(0.071) TCGA-BF-AAP1-01 17 59479054 59479054 C T TBX2 Silent p.F135F 0.27 TCGA-BF-AAP1-01 17 61498574 61498574 C T TANC2 Missense_Mutation p.S1744F 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BF-AAP1-01 17 66972318 66972318 G A ABCA9 Silent p.F1578F 0.54 TCGA-BF-AAP1-01 17 7324347 7324347 C T SPEM1 Missense_Mutation p.P118L 0.50 tolerated(0.61) benign(0.002) TCGA-BF-AAP1-01 17 7750924 7750924 C T KDM6B Missense_Mutation p.P440S 0.27 unknown(0) TCGA-BF-AAP1-01 17 7807175 7807175 C A CHD3 Missense_Mutation p.H1313N 0.55 benign(0.107) TCGA-BF-AAP1-01 17 7945694 7945694 G A ALOX15B Missense_Mutation p.A153T 0.58 tolerated(1) benign(0) TCGA-BF-AAP1-01 17 79620264 79620264 C T PDE6G Silent p.R24R 0.51 TCGA-BF-AAP1-01 17 80356112 80356112 G A OGFOD3 Silent p.F261F 0.62 TCGA-BF-AAP1-01 17 9683146 9683146 C T DHRS7C Silent p.T159T 0.27 TCGA-BF-AAP1-01 18 11881067 11881070 GCAG ACA GNAL Frame_Shift_Del p.R437Hfs*46 0.27 TCGA-BF-AAP1-01 18 21752375 21752375 G A OSBPL1A Silent p.I722I 0.38 TCGA-BF-AAP1-01 18 25572684 25572684 G A CDH2 Missense_Mutation p.P427S 0.45 tolerated(0.11) benign(0.111) TCGA-BF-AAP1-01 18 28609493 28609493 G A DSC3 Silent p.F152F 0.33 TCGA-BF-AAP1-01 18 28913675 28913675 G A DSG1 Missense_Mutation p.E270K 0.40 tolerated(0.23) benign(0.272) TCGA-BF-AAP1-01 18 29039894 29039894 G A DSG3 Missense_Mutation p.E202K 0.41 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP1-01 18 29795161 29795161 G A MEP1B Missense_Mutation p.E566K 0.53 tolerated(0.5) benign(0.014) TCGA-BF-AAP1-01 18 29847988 29847988 G A GAREM Missense_Mutation p.S826F 0.42 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP1-01 18 31322972 31322972 C T ASXL3 Missense_Mutation p.L1054F 0.44 probably_damaging(0.941) TCGA-BF-AAP1-01 18 45556150 45556150 G A ZBTB7C Silent p.P447P 0.36 TCGA-BF-AAP1-01 18 47431078 47431078 G A MYO5B Silent p.F845F 0.41 TCGA-BF-AAP1-01 18 47777250 47777250 G A CCDC11 Silent p.L292L 0.37 TCGA-BF-AAP1-01 18 480747 480747 T A COLEC12 Silent p.A6A 0.41 TCGA-BF-AAP1-01 18 48327874 48327874 C T MRO Missense_Mutation p.E158K 0.43 deleterious(0.04) probably_damaging(0.967) TCGA-BF-AAP1-01 18 50432497 50432497 G A DCC Missense_Mutation p.E166K 0.45 tolerated(0.07) benign(0.102) TCGA-BF-AAP1-01 18 51750473 51750473 G A MBD2 Missense_Mutation p.P153S 0.27 tolerated(0.12) possibly_damaging(0.49) TCGA-BF-AAP1-01 18 55862709 55862709 G A NEDD4L Intron 0.64 TCGA-BF-AAP1-01 18 58039199 58039199 C T MC4R Silent p.V128V 0.47 TCGA-BF-AAP1-01 18 5892057 5892057 G A TMEM200C Silent p.I2I 0.33 TCGA-BF-AAP1-01 18 59221459 59221459 G A CDH20 Missense_Mutation p.R646Q 0.50 deleterious(0.04) benign(0.436) TCGA-BF-AAP1-01 18 59221460 59221460 G A CDH20 Silent p.R646R 0.50 TCGA-BF-AAP1-01 18 59483722 59483722 G A RNF152 5'UTR 0.38 TCGA-BF-AAP1-01 18 60384410 60384410 C T PHLPP1 Silent p.F498F 0.50 TCGA-BF-AAP1-01 18 61377418 61377418 C T SERPINB11 5'UTR 0.41 TCGA-BF-AAP1-01 18 66504034 66504034 G A CCDC102B Missense_Mutation p.E12K 0.15 tolerated(0.08) possibly_damaging(0.671) TCGA-BF-AAP1-01 18 677819 677819 G A ENOSF1 Silent p.F331F 0.35 TCGA-BF-AAP1-01 18 70205510 70205510 C T CBLN2 Missense_Mutation p.M192I 0.44 deleterious(0) benign(0.196) TCGA-BF-AAP1-01 18 7049208 7049208 G A LAMA1 Missense_Mutation p.P213S 0.45 tolerated(0.1) benign(0.256) TCGA-BF-AAP1-01 18 72347218 72347218 C T ZNF407 Missense_Mutation p.R1415C 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP1-01 18 74091537 74091537 G C ZNF516 Missense_Mutation p.P845A 0.32 tolerated(0.07) probably_damaging(0.996) TCGA-BF-AAP1-01 18 8784712 8784712 C T SOGA2 Silent p.N534N 0.46 TCGA-BF-AAP1-01 18 9887959 9887959 G T TXNDC2 Missense_Mutation p.V495L 0.46 tolerated(1) benign(0.013) TCGA-BF-AAP1-01 19 10218703 10218703 G T PPAN Missense_Mutation p.A136S 0.20 tolerated(0.28) benign(0.228) TCGA-BF-AAP1-01 19 1080106 1080106 C T HMHA1 Silent p.S580S 0.47 TCGA-BF-AAP1-01 19 11328061 11328061 G A DOCK6 Missense_Mutation p.P1186L 0.58 tolerated(0.35) benign(0.001) TCGA-BF-AAP1-01 19 11660542 11660542 C T CNN1 Missense_Mutation p.P276S 0.38 deleterious(0.05) probably_damaging(0.994) TCGA-BF-AAP1-01 19 12244302 12244302 A C ZNF20 Silent p.G233G 0.40 TCGA-BF-AAP1-01 19 1233628 1233628 G A C19orf26 Missense_Mutation p.A259V 0.67 tolerated(0.41) benign(0.022) TCGA-BF-AAP1-01 19 12767424 12767424 G A MAN2B1 Silent p.F535F 0.32 TCGA-BF-AAP1-01 19 15586897 15586897 C T PGLYRP2 Missense_Mutation p.G195D 0.39 tolerated(0.12) benign(0.081) TCGA-BF-AAP1-01 19 18377264 18377264 G A KIAA1683 Silent p.T362T 0.54 TCGA-BF-AAP1-01 19 2115263 2115263 G A AP3D1 Silent p.I768I 0.53 TCGA-BF-AAP1-01 19 21990854 21990854 G A ZNF43 Missense_Mutation p.S662F 0.44 tolerated(0.67) benign(0.01) TCGA-BF-AAP1-01 19 22847457 22847457 G A ZNF492 Missense_Mutation p.R329K 0.47 tolerated(0.45) benign(0.139) TCGA-BF-AAP1-01 19 22939890 22939890 G A ZNF99 3'Flank 0.38 TCGA-BF-AAP1-01 19 308813 308813 G A MIER2 Missense_Mutation p.P366L 0.41 deleterious(0.03) possibly_damaging(0.563) TCGA-BF-AAP1-01 19 308814 308814 G A MIER2 Missense_Mutation p.P366S 0.40 tolerated(0.13) benign(0.031) TCGA-BF-AAP1-01 19 30936435 30936435 G A ZNF536 Missense_Mutation p.D656N 0.46 deleterious(0.03) benign(0.274) TCGA-BF-AAP1-01 19 35250396 35250396 G A ZNF599 Missense_Mutation p.S437F 0.35 tolerated(0.21) probably_damaging(0.969) TCGA-BF-AAP1-01 19 36045927 36045927 T A ATP4A Missense_Mutation p.K793M 0.53 deleterious(0) possibly_damaging(0.781) TCGA-BF-AAP1-01 19 3653369 3653369 G A PIP5K1C Silent p.F280F 0.46 TCGA-BF-AAP1-01 19 38954455 38954455 G A RYR1 Silent p.R917R 0.44 TCGA-BF-AAP1-01 19 39103336 39103336 C T MAP4K1 Missense_Mutation p.E194K 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-BF-AAP1-01 19 39215106 39215106 C T ACTN4 Silent p.L637L 0.48 TCGA-BF-AAP1-01 19 39234876 39234876 C T CAPN12 5'UTR 0.44 TCGA-BF-AAP1-01 19 40902458 40902458 G A PRX Missense_Mutation p.P601S 0.43 deleterious(0.01) possibly_damaging(0.803) TCGA-BF-AAP1-01 19 41179332 41179332 G A NUMBL Missense_Mutation p.P318L 0.63 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 19 41597726 41597726 C T CYP2A13 Silent p.I248I 0.50 TCGA-BF-AAP1-01 19 42190985 42190985 G A CEACAM7 Nonsense_Mutation p.R78* 0.45 TCGA-BF-AAP1-01 19 42557753 42557753 C T GRIK5 Splice_Site p.X423_splice 0.39 TCGA-BF-AAP1-01 19 42859943 42859943 C T MEGF8 Missense_Mutation p.S1326F 0.50 deleterious(0) probably_damaging(0.987) TCGA-BF-AAP1-01 19 43343893 43343893 C A PSG10P 3'Flank 0.29 TCGA-BF-AAP1-01 19 43358394 43358394 G A PSG10P RNA 0.25 TCGA-BF-AAP1-01 19 43371793 43371793 C T PSG1 3'UTR 0.60 TCGA-BF-AAP1-01 19 43376018 43376018 G A PSG1 Silent p.L204L 0.40 TCGA-BF-AAP1-01 19 43433651 43433651 C T PSG7 Missense_Mutation p.E218K 0.43 deleterious(0) probably_damaging(0.909) TCGA-BF-AAP1-01 19 44777688 44777688 G A ZNF233 Missense_Mutation p.G292E 0.50 tolerated(0.18) benign(0.005) TCGA-BF-AAP1-01 19 45213806 45213806 G A CEACAM16 3'UTR 0.37 TCGA-BF-AAP1-01 19 46290113 46290113 G A DMWD Missense_Mutation p.T214I 0.38 deleterious(0) benign(0.066) TCGA-BF-AAP1-01 19 47823706 47823706 C T C5AR1 Silent p.F224F 0.48 TCGA-BF-AAP1-01 19 48255848 48255848 C T GLTSCR2 Missense_Mutation p.S250F 0.53 deleterious(0) possibly_damaging(0.588) TCGA-BF-AAP1-01 19 48806982 48806982 C T CCDC114 Missense_Mutation p.E268K 0.42 deleterious(0.01) possibly_damaging(0.823) TCGA-BF-AAP1-01 19 49447714 49447714 G A DHDH Missense_Mutation p.G282E 0.49 deleterious(0.02) possibly_damaging(0.883) TCGA-BF-AAP1-01 19 51528018 51528018 C T KLK11 Missense_Mutation p.G57R 0.44 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 19 51645893 51645893 G T SIGLEC7 Missense_Mutation p.E89D 0.47 deleterious(0.02) benign(0.076) TCGA-BF-AAP1-01 19 52034116 52034116 C T SIGLEC6 Silent p.G175G 0.49 TCGA-BF-AAP1-01 19 52216666 52216666 C T HAS1 3'UTR 0.58 TCGA-BF-AAP1-01 19 52326997 52326997 G C FPR3 5'UTR 0.33 TCGA-BF-AAP1-01 19 52660386 52660386 G A ZNF836 Missense_Mutation p.L184F 0.47 tolerated(0.76) benign(0.004) TCGA-BF-AAP1-01 19 53208747 53208747 G A ZNF611 Missense_Mutation p.R521C 0.47 tolerated(0.18) benign(0.002) TCGA-BF-AAP1-01 19 53958781 53958781 C T ZNF761 RNA 0.46 TCGA-BF-AAP1-01 19 54255702 54255702 G A MIR519A1 RNA 0.43 TCGA-BF-AAP1-01 19 54313490 54313490 G A NLRP12 Silent p.L475L 0.41 TCGA-BF-AAP1-01 19 55086977 55086977 G A LILRA2 Missense_Mutation p.E304K 0.32 tolerated(0.09) benign(0.027) TCGA-BF-AAP1-01 19 55144140 55144140 G A LILRB1 Missense_Mutation p.R296K 0.33 deleterious(0.03) possibly_damaging(0.5) TCGA-BF-AAP1-01 19 55179188 55179188 G A LILRB4 Missense_Mutation p.E382K 0.35 tolerated(0.2) benign(0.176) TCGA-BF-AAP1-01 19 55222142 55222142 C T AC098784.2 3'Flank 0.38 TCGA-BF-AAP1-01 19 56321427 56321427 G A NLRP11 Silent p.V183V 0.45 TCGA-BF-AAP1-01 19 56436372 56436372 G A NLRP13 Missense_Mutation p.P117S 0.33 tolerated(0.5) benign(0.02) TCGA-BF-AAP1-01 19 56925772 56925772 G T ZNF583 Missense_Mutation p.W65C 0.29 deleterious(0.02) benign(0.004) TCGA-BF-AAP1-01 19 56953868 56953868 G A ZNF667 Missense_Mutation p.H166Y 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-BF-AAP1-01 19 57646871 57646871 G A ZIM3 Silent p.S278S 0.34 TCGA-BF-AAP1-01 19 5787325 5787325 G A DUS3L Silent p.I420I 0.47 TCGA-BF-AAP1-01 19 58806070 58806070 C T ZNF8 Missense_Mutation p.S299F 0.49 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP1-01 19 8436026 8436026 G A ANGPTL4 Missense_Mutation p.D250N 0.35 tolerated(0.26) possibly_damaging(0.534) TCGA-BF-AAP1-01 19 8996350 8996350 G A MUC16 Missense_Mutation p.A13741V 0.50 benign(0.225) TCGA-BF-AAP1-01 19 9046390 9046390 G A MUC16 Silent p.I11747I 0.44 TCGA-BF-AAP1-01 19 9062090 9062090 T C MUC16 Silent p.E8452E 0.38 TCGA-BF-AAP1-01 19 9063369 9063369 G A MUC16 Missense_Mutation p.S8026L 0.44 unknown(0) TCGA-BF-AAP1-01 19 9072321 9072321 G A MUC16 Missense_Mutation p.S5042F 0.33 unknown(0) TCGA-BF-AAP1-01 19 9083165 9083165 C T MUC16 Missense_Mutation p.G2884R 0.37 unknown(0) TCGA-BF-AAP1-01 19 9085237 9085237 G A MUC16 Missense_Mutation p.S2193F 0.32 unknown(0) TCGA-BF-AAP1-01 19 9085420 9085420 G A MUC16 Missense_Mutation p.S2132F 0.32 unknown(0) TCGA-BF-AAP1-01 19 9089161 9089161 C A MUC16 Missense_Mutation p.R885M 0.26 unknown(0) TCGA-BF-AAP1-01 19 9271560 9271560 C T ZNF317 Silent p.I413I 0.58 TCGA-BF-AAP1-01 1 102302552 102302552 C T OLFM3 Silent p.Q33Q 0.33 TCGA-BF-AAP1-01 1 109235327 109235327 G T PRPF38B Silent p.A38A 0.25 TCGA-BF-AAP1-01 1 109242326 109242326 G A PRPF38B Missense_Mutation p.R442K 0.57 tolerated_low_confidence(0.58) unknown(0) TCGA-BF-AAP1-01 1 109242336 109242336 G A PRPF38B Silent p.G445G 0.60 TCGA-BF-AAP1-01 1 109242439 109242439 G A PRPF38B Missense_Mutation p.D480N 0.47 tolerated_low_confidence(0.14) unknown(0) TCGA-BF-AAP1-01 1 110038635 110038635 C T CYB561D1 Silent p.L170L 0.52 TCGA-BF-AAP1-01 1 111853038 111853038 C T CHIA 5'UTR 0.71 TCGA-BF-AAP1-01 1 11595614 11595614 C T PTCHD2 Silent p.I1243I 0.56 TCGA-BF-AAP1-01 1 118584644 118584644 G A SPAG17 Nonsense_Mutation p.R946* 0.75 TCGA-BF-AAP1-01 1 120437128 120437128 G A ADAM30 Missense_Mutation p.S611F 0.09 tolerated(0.19) benign(0.049) TCGA-BF-AAP1-01 1 12853430 12853430 G A PRAMEF1 Silent p.L18L 0.23 TCGA-BF-AAP1-01 1 12884649 12884649 C T PRAMEF11 3'UTR 0.27 TCGA-BF-AAP1-01 1 12907403 12907403 G A HNRNPCL1 Missense_Mutation p.S247F 0.27 tolerated(0.11) probably_damaging(0.943) TCGA-BF-AAP1-01 1 13474859 13474859 G A PRAMEF18 Missense_Mutation p.R424C 0.76 tolerated(0.18) possibly_damaging(0.631) TCGA-BF-AAP1-01 1 14108593 14108593 C T PRDM2 Nonsense_Mutation p.Q1435* 0.27 TCGA-BF-AAP1-01 1 143767609 143767609 C T PPIAL4G Silent p.G80G 0.22 TCGA-BF-AAP1-01 1 145562851 145562851 C T ANKRD35 Nonsense_Mutation p.Q847* 0.40 TCGA-BF-AAP1-01 1 151507526 151507526 C G CGN Silent p.V971V 0.27 TCGA-BF-AAP1-01 1 152058264 152058264 C T TCHHL1 Missense_Mutation p.E632K 0.49 tolerated(0.28) benign(0.005) TCGA-BF-AAP1-01 1 152276799 152276799 G A FLG Silent p.S3521S 0.53 TCGA-BF-AAP1-01 1 152382322 152382322 T C CRNN Silent p.S412S 0.39 TCGA-BF-AAP1-01 1 153012741 153012741 G A SPRR2D Missense_Mutation p.P28S 0.40 tolerated_low_confidence(0.44) unknown(0) TCGA-BF-AAP1-01 1 153654293 153654293 G A NPR1 Silent p.R383R 0.37 TCGA-BF-AAP1-01 1 153908609 153908609 G A DENND4B Missense_Mutation p.S832F 0.54 deleterious(0) benign(0.122) TCGA-BF-AAP1-01 1 154031102 154031102 G A NUP210L Missense_Mutation p.P973L 0.62 deleterious(0.03) possibly_damaging(0.728) TCGA-BF-AAP1-01 1 154144655 154144655 G A TPM3 Intron 0.39 TCGA-BF-AAP1-01 1 154295525 154295525 C T AQP10 Silent p.L100L 0.40 TCGA-BF-AAP1-01 1 155152336 155152336 G T TRIM46 Missense_Mutation p.R505L 0.45 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP1-01 1 157485343 157485343 G A FCRL5 3'UTR 0.45 TCGA-BF-AAP1-01 1 157485652 157485652 G A FCRL5 Missense_Mutation p.P942S 0.42 tolerated(0.15) benign(0.126) TCGA-BF-AAP1-01 1 157805808 157805808 G A CD5L Silent p.L65L 0.47 TCGA-BF-AAP1-01 1 158301263 158301263 A G CD1B 5'UTR 0.53 TCGA-BF-AAP1-01 1 158617384 158617384 G A SPTA1 Missense_Mutation p.R1281C 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 1 158669924 158669924 A T OR6K2 Silent p.L173L 0.07 TCGA-BF-AAP1-01 1 158669976 158669976 A T OR6K2 Missense_Mutation p.L156H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP1-01 1 158725624 158725624 G A OR6K6 Nonsense_Mutation p.W340* 0.31 TCGA-BF-AAP1-01 1 159409836 159409836 C T OR10J1 Silent p.L96L 0.41 TCGA-BF-AAP1-01 1 161967872 161967872 C T OLFML2B Missense_Mutation p.R406K 0.46 tolerated(0.88) benign(0) TCGA-BF-AAP1-01 1 164790786 164790786 C T PBX1 Missense_Mutation p.R375C 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-BF-AAP1-01 1 165175240 165175240 C T LMX1A Missense_Mutation p.M283I 0.45 tolerated(0.09) benign(0.016) TCGA-BF-AAP1-01 1 167023467 167023467 G A GPA33 3'UTR 0.24 TCGA-BF-AAP1-01 1 169391392 169391392 C T CCDC181 Missense_Mutation p.D93N 0.40 deleterious(0.01) benign(0.159) TCGA-BF-AAP1-01 1 169586636 169586636 T A SELP Missense_Mutation p.K37N 0.44 tolerated(0.36) possibly_damaging(0.568) TCGA-BF-AAP1-01 1 169696906 169696906 C T SELE Nonsense_Mutation p.W481* 0.45 TCGA-BF-AAP1-01 1 172634970 172634970 G A FASLG Silent p.Q220Q 0.43 TCGA-BF-AAP1-01 1 175046723 175046723 C T TNN Nonsense_Mutation p.Q57* 0.61 TCGA-BF-AAP1-01 1 175362949 175362949 G A TNR Silent p.S441S 0.49 TCGA-BF-AAP1-01 1 176661345 176661345 G A PAPPA2 Missense_Mutation p.E839K 0.41 tolerated(0.59) benign(0.055) TCGA-BF-AAP1-01 1 176668655 176668655 C T PAPPA2 Missense_Mutation p.L1056F 0.51 tolerated(0.07) benign(0.393) TCGA-BF-AAP1-01 1 177249621 177249621 C T BRINP2 Silent p.L437L 0.39 TCGA-BF-AAP1-01 1 177250105 177250105 C T BRINP2 Missense_Mutation p.S598F 0.19 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 1 178427227 178427227 C T RASAL2 Missense_Mutation p.P934S 0.34 tolerated(0.09) benign(0.006) TCGA-BF-AAP1-01 1 178490573 178490573 G A TEX35 Intron 0.36 TCGA-BF-AAP1-01 1 180793968 180793968 C T XPR1 Silent p.F281F 0.43 TCGA-BF-AAP1-01 1 181689452 181689452 G A CACNA1E Missense_Mutation p.G621E 0.50 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP1-01 1 181700313 181700313 G A CACNA1E Missense_Mutation p.R748K 0.62 tolerated(1) benign(0.067) TCGA-BF-AAP1-01 1 183519983 183519983 C T SMG7 Silent p.S1031S 0.48 TCGA-BF-AAP1-01 1 186909117 186909117 G A PLA2G4A Missense_Mutation p.M308I 0.53 tolerated(0.08) possibly_damaging(0.837) TCGA-BF-AAP1-01 1 18692020 18692020 G A IGSF21 Missense_Mutation p.E282K 0.26 deleterious(0.04) benign(0.175) TCGA-BF-AAP1-01 1 19183977 19183977 C T TAS1R2 Missense_Mutation p.V111M 0.17 tolerated(0.06) possibly_damaging(0.859) TCGA-BF-AAP1-01 1 196397246 196397246 G A KCNT2 Missense_Mutation p.P325S 0.50 deleterious(0.04) possibly_damaging(0.73) TCGA-BF-AAP1-01 1 196762622 196762622 G A CFHR3 Silent p.V324V 0.88 TCGA-BF-AAP1-01 1 197390665 197390665 C T CRB1 Silent p.F569F 0.59 TCGA-BF-AAP1-01 1 20009435 20009435 G A TMCO4 3'UTR 0.39 TCGA-BF-AAP1-01 1 201030482 201030482 C T CACNA1S Missense_Mutation p.M1056I 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAP1-01 1 201058430 201058430 A G CACNA1S Missense_Mutation p.Y286H 0.35 deleterious(0.01) benign(0.169) TCGA-BF-AAP1-01 1 201869267 201869267 C T LMOD1 Missense_Mutation p.E292K 0.46 benign(0.01) TCGA-BF-AAP1-01 1 202107549 202107549 G A ARL8A Missense_Mutation p.P51S 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 1 202718079 202718079 A T KDM5B Silent p.R670R 0.40 TCGA-BF-AAP1-01 1 203149697 203149697 G A CHI3L1 Silent p.F265F 0.47 TCGA-BF-AAP1-01 1 204237411 204237411 G A PLEKHA6 Silent p.A44A 0.57 TCGA-BF-AAP1-01 1 209952789 209952789 G A TRAF3IP3 Intron 0.28 TCGA-BF-AAP1-01 1 210796905 210796905 C T HHAT Silent p.F428F 0.41 TCGA-BF-AAP1-01 1 213181756 213181756 C T ANGEL2 Silent p.T146T 0.52 TCGA-BF-AAP1-01 1 214209100 214209100 G T PROX1 Missense_Mutation p.V713F 0.56 deleterious(0) probably_damaging(0.949) TCGA-BF-AAP1-01 1 214813265 214813265 G A CENPF Silent p.A528A 0.45 TCGA-BF-AAP1-01 1 21571535 21571535 G A ECE1 Missense_Mutation p.R409C 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-BF-AAP1-01 1 216011349 216011349 G A USH2A Missense_Mutation p.R3119C 0.56 possibly_damaging(0.462) TCGA-BF-AAP1-01 1 216348737 216348737 C T USH2A Missense_Mutation p.G1495E 0.36 probably_damaging(0.999) TCGA-BF-AAP1-01 1 216348772 216348772 G A USH2A Silent p.I1483I 0.35 TCGA-BF-AAP1-01 1 220870064 220870064 C T C1orf115 Silent p.F140F 0.42 TCGA-BF-AAP1-01 1 221912631 221912631 G A DUSP10 Silent p.P152P 0.48 TCGA-BF-AAP1-01 1 225702409 225702409 G A ENAH Silent p.A369A 0.62 TCGA-BF-AAP1-01 1 233482338 233482338 C T MLK4 Missense_Mutation p.S319F 0.45 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP1-01 1 233807262 233807262 C T KCNK1 Missense_Mutation p.P333S 0.46 tolerated_low_confidence(1) benign(0) TCGA-BF-AAP1-01 1 234452460 234452460 C T SLC35F3 Missense_Mutation p.S314F 0.43 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP1-01 1 236730051 236730051 T C HEATR1 Silent p.Q1401Q 0.52 TCGA-BF-AAP1-01 1 237617791 237617791 C T RYR2 Missense_Mutation p.P465S 0.22 possibly_damaging(0.777) TCGA-BF-AAP1-01 1 237880658 237880658 G A RYR2 Missense_Mutation p.R3495Q 0.34 benign(0.389) TCGA-BF-AAP1-01 1 2409946 2409946 G A PLCH2 Silent p.G25G 0.40 TCGA-BF-AAP1-01 1 243652419 243652419 G A SDCCAG8 Missense_Mutation p.E697K 0.26 deleterious(0.05) possibly_damaging(0.894) TCGA-BF-AAP1-01 1 247655135 247655135 G A OR2W5 RNA 0.45 TCGA-BF-AAP1-01 1 248059074 248059074 C T OR2W3 Silent p.F62F 0.40 TCGA-BF-AAP1-01 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.42 TCGA-BF-AAP1-01 1 248756191 248756191 C T OR2T10 Silent p.R293R 0.50 TCGA-BF-AAP1-01 1 248813682 248813682 G A OR2T27 Silent p.F168F 0.23 TCGA-BF-AAP1-01 1 27106618 27106618 C T ARID1A Missense_Mutation p.P2077S 0.40 possibly_damaging(0.67) TCGA-BF-AAP1-01 1 27697428 27697428 G A FCN3 Silent p.F143F 0.52 TCGA-BF-AAP1-01 1 33235277 33235277 C T KIAA1522 Missense_Mutation p.S197F 0.39 deleterious(0) unknown(0) TCGA-BF-AAP1-01 1 34285379 34285379 C T CSMD2 Missense_Mutation p.R380Q 0.15 tolerated(0.1) benign(0.37) TCGA-BF-AAP1-01 1 35476510 35476510 G A ZMYM6 Missense_Mutation p.S397F 0.25 tolerated(0.1) benign(0.002) TCGA-BF-AAP1-01 1 36202184 36202184 G A CLSPN Silent p.F1311F 0.25 TCGA-BF-AAP1-01 1 37267408 37267408 C T GRIK3 3'UTR 0.53 TCGA-BF-AAP1-01 1 39846035 39846035 G A MACF1 Silent p.Q2484Q 0.24 TCGA-BF-AAP1-01 1 39846036 39846036 G A MACF1 Missense_Mutation p.E2485K 0.24 benign(0.209) TCGA-BF-AAP1-01 1 44877915 44877915 G A RNF220 Missense_Mutation p.G49D 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP1-01 1 45270366 45270366 C T PLK3 Missense_Mutation p.S517F 0.58 deleterious(0.02) possibly_damaging(0.532) TCGA-BF-AAP1-01 1 45270367 45270367 C T PLK3 Silent p.S517S 0.59 TCGA-BF-AAP1-01 1 47395924 47395924 G A CYP4A11 Silent p.L475L 0.52 TCGA-BF-AAP1-01 1 47399910 47399910 C T CYP4A11 Silent p.K342K 0.49 TCGA-BF-AAP1-01 1 52442637 52442637 G - RAB3B Frame_Shift_Del p.F51Lfs*11 0.24 TCGA-BF-AAP1-01 1 52850264 52850264 C T ORC1 Missense_Mutation p.M571I 0.52 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP1-01 1 54258908 54258908 G A NDC1 Silent p.F543F 0.54 TCGA-BF-AAP1-01 1 54344370 54344370 G A YIPF1 Missense_Mutation p.S74F 0.55 deleterious(0.01) possibly_damaging(0.553) TCGA-BF-AAP1-01 1 57161759 57161759 C T PRKAA2 Missense_Mutation p.R239C 0.49 deleterious(0.02) possibly_damaging(0.521) TCGA-BF-AAP1-01 1 70257821 70257821 A T LRRC7 Missense_Mutation p.K95N 0.46 deleterious(0.01) possibly_damaging(0.751) TCGA-BF-AAP1-01 1 70504826 70504826 G A LRRC7 Missense_Mutation p.D1069N 0.60 deleterious(0) possibly_damaging(0.51) TCGA-BF-AAP1-01 1 74507351 74507351 C T LRRIQ3 Missense_Mutation p.D422N 0.50 tolerated(0.18) possibly_damaging(0.704) TCGA-BF-AAP1-01 1 74670916 74670916 C T FPGT Silent p.C395C 0.28 TCGA-BF-AAP1-01 1 8418357 8418357 G A RERE Missense_Mutation p.P1413L 0.27 unknown(0) TCGA-BF-AAP1-01 1 84417641 84417641 G A TTLL7 Missense_Mutation p.P15L 0.45 deleterious_low_confidence(0.05) benign(0.038) TCGA-BF-AAP1-01 1 89735285 89735285 G A GBP5 Intron 0.31 TCGA-BF-AAP1-01 1 89890068 89890068 G A GBP1P1 Intron 0.45 TCGA-BF-AAP1-01 1 92446561 92446561 C T BRDT Missense_Mutation p.P526S 0.47 deleterious(0) probably_damaging(0.95) TCGA-BF-AAP1-01 1 92604925 92604925 G A BTBD8 Silent p.L257L 0.51 TCGA-BF-AAP1-01 1 94544932 94544932 C T ABCA4 Missense_Mutation p.M395I 0.43 tolerated(0.23) benign(0.325) TCGA-BF-AAP1-01 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.47 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 20 10030185 10030185 C T ANKEF1 Missense_Mutation p.P323L 0.40 tolerated(0.1) benign(0.42) TCGA-BF-AAP1-01 20 10036383 10036383 T G ANKEF1 3'UTR 0.71 TCGA-BF-AAP1-01 20 13605888 13605888 G A TASP1 Missense_Mutation p.H53Y 0.22 deleterious(0) probably_damaging(0.971) TCGA-BF-AAP1-01 20 1559206 1559206 C T RP4-576H24.4 Missense_Mutation p.A70T 0.56 tolerated(1) benign(0.008) TCGA-BF-AAP1-01 20 2308804 2308804 C T TGM3 Nonsense_Mutation p.R376* 0.33 TCGA-BF-AAP1-01 20 2381052 2381052 C T TGM6 Silent p.F317F 0.66 TCGA-BF-AAP1-01 20 29623158 29623158 G A FRG1B 5'UTR 0.03 TCGA-BF-AAP1-01 20 30556217 30556217 C T XKR7 Missense_Mutation p.S80F 0.51 deleterious(0) probably_damaging(0.914) TCGA-BF-AAP1-01 20 3065219 3065219 G A AVP Silent p.S34S 0.33 TCGA-BF-AAP1-01 20 33067568 33067568 C T ITCH Missense_Mutation p.R639C 0.63 tolerated(0.28) probably_damaging(0.977) TCGA-BF-AAP1-01 20 33356308 33356308 G A NCOA6 Missense_Mutation p.S158L 0.31 possibly_damaging(0.817) TCGA-BF-AAP1-01 20 33523407 33523407 C T GSS Missense_Mutation p.G269D 0.27 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 20 35260995 35260995 C T SLA2 Intron 0.15 TCGA-BF-AAP1-01 20 36500367 36500367 C T CTNNBL1 Silent p.F548F 0.33 TCGA-BF-AAP1-01 20 3672829 3672829 G A SIGLEC1 Silent p.L1351L 0.48 TCGA-BF-AAP1-01 20 37534732 37534732 G A PPP1R16B Missense_Mutation p.G273R 0.60 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 20 37536668 37536668 C T PPP1R16B Intron 0.49 TCGA-BF-AAP1-01 20 40126267 40126267 G A CHD6 Intron 0.67 TCGA-BF-AAP1-01 20 43108820 43108820 C T TTPAL Missense_Mutation p.L61F 0.50 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 20 43836243 43836243 G A SEMG1 Missense_Mutation p.G102E 0.33 tolerated(0.13) probably_damaging(0.93) TCGA-BF-AAP1-01 20 44592527 44592527 G A ZNF335 Missense_Mutation p.A402V 0.57 tolerated(0.19) benign(0.007) TCGA-BF-AAP1-01 20 45130330 45130330 C T ZNF334 Missense_Mutation p.G550R 0.33 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 20 45644865 45644865 G A EYA2 Missense_Mutation p.G115E 0.39 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 20 46254184 46254184 G A NCOA3 Missense_Mutation p.G106R 0.50 deleterious(0) probably_damaging(0.983) TCGA-BF-AAP1-01 20 464619 464619 C T CSNK2A1 Missense_Mutation p.G388S 0.21 tolerated_low_confidence(0.16) benign(0.008) TCGA-BF-AAP1-01 20 54579040 54579040 G A CBLN4 Missense_Mutation p.S63L 0.37 tolerated(0.09) possibly_damaging(0.509) TCGA-BF-AAP1-01 20 56138710 56138710 G A PCK1 Missense_Mutation p.M296I 0.29 tolerated(0.13) benign(0.416) TCGA-BF-AAP1-01 20 60791878 60791878 C T HRH3 Nonsense_Mutation p.W174* 0.32 TCGA-BF-AAP1-01 20 60903025 60903025 G A LAMA5 Missense_Mutation p.S1565F 0.11 possibly_damaging(0.884) TCGA-BF-AAP1-01 20 61526402 61526402 G A DIDO1 Missense_Mutation p.S777F 0.51 probably_damaging(0.914) TCGA-BF-AAP1-01 20 62200028 62200028 G A HELZ2 Silent p.F471F 0.67 TCGA-BF-AAP1-01 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.56 tolerated(0.4) benign(0) TCGA-BF-AAP1-01 21 11039088 11039088 C T BAGE2 RNA 0.03 TCGA-BF-AAP1-01 21 11039136 11039136 A T BAGE2 RNA 0.04 TCGA-BF-AAP1-01 21 11039377 11039377 C T BAGE2 RNA 0.07 TCGA-BF-AAP1-01 21 19635107 19635107 G T CHODL Splice_Site p.X212_splice 0.35 TCGA-BF-AAP1-01 21 19651326 19651326 C T TMPRSS15 Missense_Mutation p.G907R 0.50 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP1-01 21 31852361 31852361 C T KRTAP19-1 3'UTR 0.47 TCGA-BF-AAP1-01 21 34725101 34725101 C T IFNAR1 Missense_Mutation p.P394L 0.44 tolerated(0.09) benign(0.049) TCGA-BF-AAP1-01 21 38114079 38114079 G C SIM2 Missense_Mutation p.W304C 0.40 deleterious(0) possibly_damaging(0.685) TCGA-BF-AAP1-01 21 41452202 41452202 C T DSCAM Missense_Mutation p.E1433K 0.44 tolerated(0.09) probably_damaging(0.952) TCGA-BF-AAP1-01 21 41667995 41667995 C T DSCAM Nonsense_Mutation p.W723* 0.22 TCGA-BF-AAP1-01 21 43766623 43766623 C T TFF2 3'UTR 0.41 TCGA-BF-AAP1-01 21 45928785 45928785 C T TSPEAR Intron 0.67 TCGA-BF-AAP1-01 22 16449113 16449113 C T OR11H1 Missense_Mutation p.G231E 0.34 deleterious(0.03) probably_damaging(0.962) TCGA-BF-AAP1-01 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.18 deleterious(0.01) possibly_damaging(0.461) TCGA-BF-AAP1-01 22 18022559 18022559 C T CECR2 Silent p.H888H 0.49 TCGA-BF-AAP1-01 22 18022560 18022560 C T CECR2 Missense_Mutation p.P889S 0.49 tolerated_low_confidence(0.09) benign(0.009) TCGA-BF-AAP1-01 22 20458596 20458596 G A RIMBP3 Silent p.I902I 0.19 TCGA-BF-AAP1-01 22 21134235 21134235 G A SERPIND1 Missense_Mutation p.R212K 0.43 tolerated(0.08) possibly_damaging(0.891) TCGA-BF-AAP1-01 22 24573699 24573699 C T CABIN1 Missense_Mutation p.P2145S 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP1-01 22 25131841 25131841 C T PIWIL3 Missense_Mutation p.G490R 0.36 deleterious(0) benign(0.24) TCGA-BF-AAP1-01 22 27008123 27008123 C T CRYBB1 Missense_Mutation p.G71D 0.43 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP1-01 22 27008124 27008124 C T CRYBB1 Missense_Mutation p.G71S 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 22 32506004 32506004 G A SLC5A1 Missense_Mutation p.G600E 0.31 deleterious(0.04) benign(0.266) TCGA-BF-AAP1-01 22 33402456 33402456 G A SYN3 Silent p.S64S 0.31 TCGA-BF-AAP1-01 22 35463018 35463018 G A ISX 5'UTR 0.42 TCGA-BF-AAP1-01 22 36661374 36661374 G A APOL1 Silent p.G180G 0.35 TCGA-BF-AAP1-01 22 37532317 37532317 C T IL2RB Silent p.T218T 0.64 TCGA-BF-AAP1-01 22 37603346 37603346 G A SSTR3 Missense_Mutation p.A166V 0.41 deleterious(0.03) possibly_damaging(0.588) TCGA-BF-AAP1-01 22 37769967 37769967 G A ELFN2 Silent p.T536T 0.43 TCGA-BF-AAP1-01 22 37964408 37964408 C T CDC42EP1 Missense_Mutation p.P253S 0.80 tolerated(0.21) unknown(0) TCGA-BF-AAP1-01 22 38119680 38119680 C T TRIOBP Missense_Mutation p.P373S 0.52 tolerated_low_confidence(0.15) benign(0.015) TCGA-BF-AAP1-01 22 38130829 38130829 G A TRIOBP Missense_Mutation p.E1496K 0.33 tolerated_low_confidence(0.07) benign(0.021) TCGA-BF-AAP1-01 22 38168626 38168626 G A TRIOBP Missense_Mutation p.G2319R 0.38 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 22 38536166 38536166 C T PLA2G6 Missense_Mutation p.R207K 0.29 tolerated(1) benign(0) TCGA-BF-AAP1-01 22 42605786 42605786 G A TCF20 Silent p.I1842I 0.33 TCGA-BF-AAP1-01 22 42607910 42607910 G A TCF20 Silent p.S1134S 0.24 TCGA-BF-AAP1-01 22 44645445 44645445 C T KIAA1644 3'UTR 0.40 TCGA-BF-AAP1-01 2 102626073 102626073 C T IL1R2 Silent p.F39F 0.43 TCGA-BF-AAP1-01 2 102956725 102956725 G A IL1RL1 Nonsense_Mutation p.W147* 0.33 TCGA-BF-AAP1-01 2 107041593 107041593 C T RGPD3 Missense_Mutation p.D944N 0.36 tolerated(0.17) possibly_damaging(0.474) TCGA-BF-AAP1-01 2 108881369 108881369 C T SULT1C3 Missense_Mutation p.S237F 0.38 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 2 111753527 111753527 G A ACOXL Silent p.V409V 0.39 TCGA-BF-AAP1-01 2 113588001 113588001 G A IL1B Silent p.F249F 0.45 TCGA-BF-AAP1-01 2 121106758 121106758 C T INHBB Silent p.L178L 0.38 TCGA-BF-AAP1-01 2 128186638 128186638 G A PROC 3'UTR 0.38 TCGA-BF-AAP1-01 2 133542997 133542997 C T NCKAP5 Missense_Mutation p.E463K 0.23 deleterious(0.02) benign(0.015) TCGA-BF-AAP1-01 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.44 deleterious(0.02) possibly_damaging(0.486) TCGA-BF-AAP1-01 2 141116426 141116426 C T LRP1B Missense_Mutation p.E3741K 0.30 benign(0) TCGA-BF-AAP1-01 2 143799671 143799671 C T KYNU Missense_Mutation p.S443F 0.38 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP1-01 2 155566291 155566291 C T KCNJ3 Silent p.F293F 0.29 TCGA-BF-AAP1-01 2 160628370 160628370 A T LY75 Missense_Mutation p.F1872I 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.472) TCGA-BF-AAP1-01 2 160964212 160964212 C T ITGB6 Missense_Mutation p.R749Q 0.49 deleterious(0) probably_damaging(0.941) TCGA-BF-AAP1-01 2 166245186 166245186 C T SCN2A Silent p.L1624L 0.28 TCGA-BF-AAP1-01 2 166929996 166929996 C T SCN1A Missense_Mutation p.E46K 0.38 tolerated(0.07) benign(0.225) TCGA-BF-AAP1-01 2 167313557 167313557 C T SCN7A Missense_Mutation p.M371I 0.24 tolerated(0.13) benign(0.015) TCGA-BF-AAP1-01 2 168098322 168098322 G A XIRP2 Missense_Mutation p.V360I 0.42 benign(0.065) TCGA-BF-AAP1-01 2 168106644 168106644 A T XIRP2 Missense_Mutation p.K2914N 0.35 benign(0.048) TCGA-BF-AAP1-01 2 168107590 168107590 C T XIRP2 Missense_Mutation p.R3230C 0.25 benign(0.024) TCGA-BF-AAP1-01 2 169764145 169764145 G A G6PC2 Silent p.L208L 0.16 TCGA-BF-AAP1-01 2 171056769 171056769 G A MYO3B Missense_Mutation p.G99E 0.46 tolerated(0.23) possibly_damaging(0.449) TCGA-BF-AAP1-01 2 179407799 179407799 T A TTN Nonsense_Mutation p.R32301* 0.44 TCGA-BF-AAP1-01 2 179431088 179431088 C T TTN Missense_Mutation p.E26591K 0.49 TCGA-BF-AAP1-01 2 179437076 179437076 C T TTN Missense_Mutation p.A24595T 0.35 TCGA-BF-AAP1-01 2 179517418 179517418 G A TTN Missense_Mutation p.S13002L 0.35 TCGA-BF-AAP1-01 2 179595497 179595497 G A TTN Silent p.F5921F 0.48 TCGA-BF-AAP1-01 2 179595694 179595694 C T TTN Missense_Mutation p.D5900N 0.37 TCGA-BF-AAP1-01 2 179600647 179600647 C T TTN Silent p.R4842R 0.41 TCGA-BF-AAP1-01 2 179606317 179606317 G A TTN Silent p.F3881F 0.39 TCGA-BF-AAP1-01 2 179612234 179612234 G A TTN Intron 0.32 TCGA-BF-AAP1-01 2 179614350 179614350 G A TTN Intron 0.45 TCGA-BF-AAP1-01 2 179641978 179641978 G A TTN Missense_Mutation p.S1571F 0.38 TCGA-BF-AAP1-01 2 179644650 179644650 G A TTN Intron 0.53 TCGA-BF-AAP1-01 2 179644840 179644840 C T TTN Missense_Mutation p.A1206T 0.36 TCGA-BF-AAP1-01 2 179732893 179732893 C T CCDC141 Missense_Mutation p.E812K 0.51 deleterious(0.04) possibly_damaging(0.69) TCGA-BF-AAP1-01 2 182346324 182346324 G A ITGA4 Splice_Site p.X252_splice 0.46 TCGA-BF-AAP1-01 2 183601072 183601072 C T DNAJC10 Missense_Mutation p.P316S 0.55 tolerated(0.09) possibly_damaging(0.619) TCGA-BF-AAP1-01 2 185803750 185803750 C T ZNF804A Silent p.F1209F 0.47 TCGA-BF-AAP1-01 2 186673740 186673740 G T FSIP2 Silent p.L6658L 0.39 TCGA-BF-AAP1-01 2 187540591 187540591 A G ITGAV Silent p.S955S 0.42 TCGA-BF-AAP1-01 2 1921005 1921005 G A MYT1L Silent p.C528C 0.51 TCGA-BF-AAP1-01 2 196673501 196673501 C T DNAH7 Missense_Mutation p.E3330K 0.33 deleterious(0) probably_damaging(0.936) TCGA-BF-AAP1-01 2 196674576 196674576 G A DNAH7 Missense_Mutation p.H3261Y 0.35 tolerated(0.35) benign(0.002) TCGA-BF-AAP1-01 2 196825023 196825023 C T DNAH7 Missense_Mutation p.R951Q 0.42 deleterious(0.04) possibly_damaging(0.883) TCGA-BF-AAP1-01 2 197184492 197184492 C T HECW2 Silent p.E374E 0.53 TCGA-BF-AAP1-01 2 201485964 201485964 G A AOX1 Missense_Mutation p.D666N 0.47 tolerated(0.24) benign(0.012) TCGA-BF-AAP1-01 2 207170939 207170939 C T ZDBF2 Missense_Mutation p.R563W 0.33 tolerated(0.34) probably_damaging(0.919) TCGA-BF-AAP1-01 2 207559580 207559580 G A DYTN Silent p.L247L 0.29 TCGA-BF-AAP1-01 2 207824358 207824358 C T CPO Silent p.L126L 0.19 TCGA-BF-AAP1-01 2 208631721 208631721 G A FZD5 Silent p.S581S 0.25 TCGA-BF-AAP1-01 2 217234993 217234993 G A MARCH4 5'UTR 0.60 TCGA-BF-AAP1-01 2 219344402 219344402 G A USP37 Silent p.S624S 0.20 TCGA-BF-AAP1-01 2 219394691 219394691 G A USP37 Missense_Mutation p.T284I 0.35 deleterious(0.02) benign(0.043) TCGA-BF-AAP1-01 2 220379875 220379875 C T ASIC4 Silent p.P270P 0.42 TCGA-BF-AAP1-01 2 220397745 220397745 C T ASIC4 Intron 0.50 TCGA-BF-AAP1-01 2 220414622 220414622 C T TMEM198 3'UTR 0.15 TCGA-BF-AAP1-01 2 225666751 225666751 G A DOCK10 Silent p.H1425H 0.17 TCGA-BF-AAP1-01 2 225666752 225666752 T A DOCK10 Missense_Mutation p.H1425L 0.17 tolerated(0.09) benign(0.006) TCGA-BF-AAP1-01 2 228883174 228883174 C T SPHKAP Missense_Mutation p.G799E 0.42 tolerated(1) benign(0.001) TCGA-BF-AAP1-01 2 231313845 231313845 C T SP100 Missense_Mutation p.S189L 0.49 tolerated(0.32) benign(0.009) TCGA-BF-AAP1-01 2 232458108 232458108 C T C2orf57 Missense_Mutation p.P149L 0.65 tolerated(0.07) probably_damaging(0.958) TCGA-BF-AAP1-01 2 24051786 24051786 G A ATAD2B Silent p.I584I 0.36 TCGA-BF-AAP1-01 2 241689914 241689914 C T KIF1A Missense_Mutation p.R970H 0.40 deleterious(0) possibly_damaging(0.782) TCGA-BF-AAP1-01 2 24239828 24239828 C T MFSD2B Missense_Mutation p.A154V 0.48 deleterious(0.01) possibly_damaging(0.72) TCGA-BF-AAP1-01 2 24435588 24435588 T C ITSN2 Silent p.G1340G 0.25 TCGA-BF-AAP1-01 2 25523011 25523011 G A DNMT3A Silent p.P58P 0.42 TCGA-BF-AAP1-01 2 31558746 31558746 C T XDH 3'UTR 0.38 TCGA-BF-AAP1-01 2 32476198 32476198 G A NLRC4 Silent p.F245F 0.29 TCGA-BF-AAP1-01 2 3743309 3743309 G A ALLC Missense_Mutation p.G172S 0.44 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 2 38298380 38298380 C G CYP1B1 Missense_Mutation p.G373R 0.50 tolerated(0.07) benign(0.062) TCGA-BF-AAP1-01 2 39406287 39406287 G A CDKL4 3'UTR 0.35 TCGA-BF-AAP1-01 2 39487798 39487798 G A MAP4K3 Nonsense_Mutation p.R753* 0.56 TCGA-BF-AAP1-01 2 50850581 50850581 C T NRXN1 Silent p.L368L 0.47 TCGA-BF-AAP1-01 2 58373477 58373477 G A VRK2 Silent p.K350K 0.29 TCGA-BF-AAP1-01 2 62095740 62095740 A T CCT4 3'UTR 0.53 TCGA-BF-AAP1-01 2 73651805 73651805 C T ALMS1 Missense_Mutation p.R338C 0.28 benign(0) TCGA-BF-AAP1-01 2 74041019 74041019 C T C2orf78 Silent p.T171T 0.33 TCGA-BF-AAP1-01 2 74462304 74462304 G A SLC4A5 Missense_Mutation p.S786F 0.30 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 2 75112672 75112672 G A HK2 Missense_Mutation p.E631K 0.39 tolerated(0.45) benign(0.006) TCGA-BF-AAP1-01 2 75112674 75112674 G A HK2 Silent p.E631E 0.38 TCGA-BF-AAP1-01 2 79314715 79314715 G A REG1B Silent p.F8F 0.23 TCGA-BF-AAP1-01 2 79349136 79349136 C T REG1A Missense_Mutation p.S69L 0.30 tolerated(0.09) benign(0) TCGA-BF-AAP1-01 2 80646699 80646699 C T CTNNA2 Silent p.F421F 0.37 TCGA-BF-AAP1-01 2 89160114 89160114 G A IGKJ5 Silent p.I2I 0.53 TCGA-BF-AAP1-01 2 89265853 89265853 G A IGKV1-6 Silent p.F93F 0.52 TCGA-BF-AAP1-01 3 107766108 107766108 A G CD47 3'UTR 0.45 TCGA-BF-AAP1-01 3 108158736 108158736 C T MYH15 Missense_Mutation p.E995K 0.40 tolerated(0.06) benign(0.01) TCGA-BF-AAP1-01 3 111603785 111603785 G A PHLDB2 Silent p.G287G 0.46 TCGA-BF-AAP1-01 3 112647810 112647810 C T CD200R1 Missense_Mutation p.D208N 0.44 tolerated(0.12) benign(0.09) TCGA-BF-AAP1-01 3 112647965 112647965 G A CD200R1 Intron 0.53 TCGA-BF-AAP1-01 3 11374483 11374483 C T ATG7 Missense_Mutation p.R269C 0.58 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 3 119217602 119217602 C T TIMMDC1 Missense_Mutation p.P8S 0.32 tolerated(0.09) benign(0.025) TCGA-BF-AAP1-01 3 120400964 120400964 C T HGD 5'UTR 0.36 TCGA-BF-AAP1-01 3 121001169 121001169 C T STXBP5L Missense_Mutation p.R723C 0.48 tolerated(0.08) possibly_damaging(0.708) TCGA-BF-AAP1-01 3 121356005 121356005 C T HCLS1 Missense_Mutation p.E185K 0.40 deleterious(0.01) unknown(0) TCGA-BF-AAP1-01 3 121649793 121649793 G A SLC15A2 Missense_Mutation p.G554R 0.42 deleterious(0.02) possibly_damaging(0.691) TCGA-BF-AAP1-01 3 122003912 122003912 T A CASR Silent p.G1047G 0.41 TCGA-BF-AAP1-01 3 123301081 123301081 A T PTPLB Missense_Mutation p.F84Y 0.50 deleterious(0.01) benign(0.196) TCGA-BF-AAP1-01 3 124438360 124438360 A G RP11-71H17.7 5'Flank 0.50 TCGA-BF-AAP1-01 3 12859337 12859337 C T CAND2 Missense_Mutation p.S969L 0.15 tolerated(0.27) benign(0.034) TCGA-BF-AAP1-01 3 129247491 129247491 C T RHO 5'UTR 0.70 TCGA-BF-AAP1-01 3 129694705 129694705 C T TRH Silent p.L16L 0.45 TCGA-BF-AAP1-01 3 136664464 136664464 C T NCK1 Missense_Mutation p.S89F 0.52 deleterious(0.01) possibly_damaging(0.62) TCGA-BF-AAP1-01 3 138174035 138174035 G A ESYT3 Splice_Site p.X124_splice 0.39 TCGA-BF-AAP1-01 3 139297728 139297728 T G NMNAT3 Silent p.T56T 0.38 TCGA-BF-AAP1-01 3 139346470 139346470 G A NMNAT3 5'UTR 0.33 TCGA-BF-AAP1-01 3 140866110 140866110 G A SPSB4 Silent p.%3D 0.52 TCGA-BF-AAP1-01 3 1424822 1424822 C T CNTN6 Missense_Mutation p.S788F 0.46 deleterious(0) benign(0.206) TCGA-BF-AAP1-01 3 14561663 14561663 G A GRIP2 RNA 0.40 TCGA-BF-AAP1-01 3 147114146 147114146 C T ZIC4 Missense_Mutation p.G111R 0.59 deleterious(0.02) probably_damaging(0.997) TCGA-BF-AAP1-01 3 154865010 154865010 C T MME Silent p.L498L 0.53 TCGA-BF-AAP1-01 3 155628905 155628905 T C GMPS Silent p.V241V 0.34 TCGA-BF-AAP1-01 3 161214933 161214933 G A OTOL1 Missense_Mutation p.G113E 0.45 deleterious(0.02) unknown(0) TCGA-BF-AAP1-01 3 166958458 166958458 G A ZBBX 3'UTR 0.38 TCGA-BF-AAP1-01 3 167170742 167170742 C T SERPINI2 Missense_Mutation p.D316N 0.36 tolerated(0.27) benign(0.373) TCGA-BF-AAP1-01 3 17052778 17052778 C T PLCL2 Missense_Mutation p.S521F 0.39 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP1-01 3 17131375 17131375 G A PLCL2 Missense_Mutation p.E993K 0.49 tolerated_low_confidence(0.06) possibly_damaging(0.756) TCGA-BF-AAP1-01 3 172834978 172834978 C T SPATA16 Missense_Mutation p.D182N 0.42 deleterious(0) possibly_damaging(0.728) TCGA-BF-AAP1-01 3 183756166 183756166 C T HTR3D Silent p.L297L 0.48 TCGA-BF-AAP1-01 3 184910541 184910541 G A EHHADH Missense_Mutation p.P549S 0.39 tolerated(0.15) benign(0.057) TCGA-BF-AAP1-01 3 186915543 186915543 G A RTP1 Nonsense_Mutation p.W80* 0.34 TCGA-BF-AAP1-01 3 189612222 189612222 G A TP63 Nonsense_Mutation p.W658* 0.57 TCGA-BF-AAP1-01 3 195692339 195692339 C T SDHAP1 RNA 0.23 TCGA-BF-AAP1-01 3 196388089 196388089 C T NRROS Silent p.S525S 0.40 TCGA-BF-AAP1-01 3 197401996 197401996 G A KIAA0226 Missense_Mutation p.R938W 0.57 deleterious(0) unknown(0) TCGA-BF-AAP1-01 3 19975140 19975140 C T EFHB Missense_Mutation p.R124Q 0.44 tolerated_low_confidence(0.05) benign(0.077) TCGA-BF-AAP1-01 3 36874178 36874178 G A TRANK1 Missense_Mutation p.S2255F 0.34 tolerated(0.19) benign(0.005) TCGA-BF-AAP1-01 3 38596041 38596041 C T SCN5A Splice_Site p.X1515_splice 0.53 TCGA-BF-AAP1-01 3 38645203 38645203 C T SCN5A Silent p.T630T 0.38 TCGA-BF-AAP1-01 3 38647629 38647629 G A SCN5A Missense_Mutation p.S384F 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 3 3887429 3887429 C T LRRN1 Silent p.I368I 0.51 TCGA-BF-AAP1-01 3 38936144 38936144 C T SCN11A Silent p.K905K 0.52 TCGA-BF-AAP1-01 3 40204223 40204223 G A MYRIP Missense_Mutation p.G158R 0.36 deleterious(0) probably_damaging(0.977) TCGA-BF-AAP1-01 3 43122077 43122077 G A POMGNT2 Missense_Mutation p.P283S 0.51 tolerated(0.73) benign(0.011) TCGA-BF-AAP1-01 3 44541747 44541747 G A ZNF852 Silent p.L174L 0.56 TCGA-BF-AAP1-01 3 46759037 46759037 G A PRSS50 Missense_Mutation p.P66L 0.50 tolerated(0.09) benign(0.071) TCGA-BF-AAP1-01 3 47957503 47957503 G A MAP4 Missense_Mutation p.S605F 0.40 deleterious(0.02) possibly_damaging(0.896) TCGA-BF-AAP1-01 3 49160208 49160208 G A LAMB2 Missense_Mutation p.S1501F 0.50 deleterious(0) possibly_damaging(0.602) TCGA-BF-AAP1-01 3 49570101 49570101 C T DAG1 Silent p.I719I 0.49 TCGA-BF-AAP1-01 3 49725291 49725291 C A MST1 Missense_Mutation p.G45V 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-BF-AAP1-01 3 51265443 51265443 G A DOCK3 Missense_Mutation p.G524D 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-BF-AAP1-01 3 51456327 51456327 G A VPRBP Silent p.F651F 0.36 TCGA-BF-AAP1-01 3 51994268 51994268 G A PCBP4 Silent p.I108I 0.43 TCGA-BF-AAP1-01 3 53778799 53778799 G A CACNA1D Missense_Mutation p.R1004K 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-BF-AAP1-01 3 54871195 54871195 G A CACNA2D3 Missense_Mutation p.D470N 0.44 tolerated(0.46) benign(0.01) TCGA-BF-AAP1-01 3 55733455 55733455 C T ERC2 Missense_Mutation p.R933Q 0.39 tolerated_low_confidence(0.05) benign(0.046) TCGA-BF-AAP1-01 3 85935376 85935376 C T CADM2 Missense_Mutation p.S136L 0.40 tolerated(0.3) benign(0.012) TCGA-BF-AAP1-01 3 8787614 8787614 G A CAV3 3'UTR 0.31 TCGA-BF-AAP1-01 3 93595893 93595893 G T PROS1 Missense_Mutation p.S596Y 0.39 tolerated(0.53) benign(0.002) TCGA-BF-AAP1-01 3 97194213 97194213 G A EPHA6 Missense_Mutation p.E638K 0.55 tolerated(0.19) possibly_damaging(0.466) TCGA-BF-AAP1-01 3 9754481 9754481 C T CPNE9 Missense_Mutation p.L172F 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 3 97806103 97806103 C T OR5AC2 Silent p.F29F 0.48 TCGA-BF-AAP1-01 3 98189104 98189104 G A OR5K1 Missense_Mutation p.M228I 0.37 tolerated(0.08) probably_damaging(0.985) TCGA-BF-AAP1-01 4 100197701 100197701 G A ADH1A 3'UTR 0.41 TCGA-BF-AAP1-01 4 107845185 107845185 C T DKK2 Missense_Mutation p.G236S 0.50 deleterious(0) possibly_damaging(0.516) TCGA-BF-AAP1-01 4 119948080 119948080 G A SYNPO2 Missense_Mutation p.E186K 0.58 tolerated(0.25) benign(0.012) TCGA-BF-AAP1-01 4 123150333 123150333 C T KIAA1109 Missense_Mutation p.R994C 0.41 possibly_damaging(0.891) TCGA-BF-AAP1-01 4 126411568 126411568 G A FAT4 Missense_Mutation p.G4531R 0.38 benign(0.018) TCGA-BF-AAP1-01 4 128651763 128651763 G A SLC25A31 Silent p.G21G 0.37 TCGA-BF-AAP1-01 4 144918699 144918699 C T GYPB Silent p.L88L 0.41 TCGA-BF-AAP1-01 4 146744598 146744598 G A ZNF827 Silent p.L787L 0.31 TCGA-BF-AAP1-01 4 147628650 147628650 C T TTC29 Missense_Mutation p.E462K 0.41 tolerated_low_confidence(0.24) benign(0.001) TCGA-BF-AAP1-01 4 153864420 153864420 C T FHDC1 Missense_Mutation p.P71S 0.66 tolerated(0.24) possibly_damaging(0.617) TCGA-BF-AAP1-01 4 155155874 155155874 G A DCHS2 Silent p.R2855R 0.49 TCGA-BF-AAP1-01 4 156268979 156268979 G A MAP9 Missense_Mutation p.P634S 0.39 deleterious(0.03) possibly_damaging(0.586) TCGA-BF-AAP1-01 4 156632112 156632112 C T GUCY1A3 Silent p.S265S 0.31 TCGA-BF-AAP1-01 4 156723656 156723656 C T GUCY1B3 Silent p.I446I 0.26 TCGA-BF-AAP1-01 4 158057786 158057786 G A GLRB Missense_Mutation p.D155N 0.36 deleterious(0) benign(0.396) TCGA-BF-AAP1-01 4 158255201 158255201 C T GRIA2 Missense_Mutation p.L399F 0.39 tolerated(0.71) benign(0.002) TCGA-BF-AAP1-01 4 164394350 164394350 G A TKTL2 Silent p.L179L 0.41 TCGA-BF-AAP1-01 4 169589473 169589473 G A PALLD Silent p.T347T 0.42 TCGA-BF-AAP1-01 4 17528483 17528483 G A CLRN2 Silent p.V159V 0.27 TCGA-BF-AAP1-01 4 176555961 176555961 A T GPM6A 3'UTR 0.44 TCGA-BF-AAP1-01 4 178272659 178272659 C A NEIL3 Missense_Mutation p.P332H 0.12 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP1-01 4 1836659 1836659 G A LETM1 Silent p.F263F 0.44 TCGA-BF-AAP1-01 4 187455305 187455305 G A MTNR1A Silent p.L197L 0.49 TCGA-BF-AAP1-01 4 187509961 187509961 G A FAT1 Missense_Mutation p.P4518S 0.42 benign(0.005) TCGA-BF-AAP1-01 4 189068588 189068588 G A TRIML1 3'UTR 0.52 TCGA-BF-AAP1-01 4 20734378 20734378 C T KCNIP4 Missense_Mutation p.D190N 0.44 deleterious(0.02) probably_damaging(0.949) TCGA-BF-AAP1-01 4 23830128 23830128 C T PPARGC1A Missense_Mutation p.D218N 0.38 tolerated(0.16) benign(0.148) TCGA-BF-AAP1-01 4 25806288 25806288 G A SEL1L3 Missense_Mutation p.L551F 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP1-01 4 26741577 26741577 C T TBC1D19 Silent p.S403S 0.45 TCGA-BF-AAP1-01 4 38777906 38777906 G A TLR10 5'UTR 0.38 TCGA-BF-AAP1-01 4 39077748 39077748 C T KLHL5 Missense_Mutation p.R229C 0.30 tolerated(0.06) probably_damaging(0.95) TCGA-BF-AAP1-01 4 39408891 39408891 T A KLB Missense_Mutation p.S108T 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 4 42592872 42592872 G A ATP8A1 Silent p.T160T 0.39 TCGA-BF-AAP1-01 4 47574975 47574975 G A ATP10D Silent p.R1109R 0.42 TCGA-BF-AAP1-01 4 47938954 47938954 G A CNGA1 Silent p.I588I 0.45 TCGA-BF-AAP1-01 4 48501514 48501514 A C FRYL Silent p.S2989S 0.54 TCGA-BF-AAP1-01 4 55139809 55139809 C T PDGFRA Silent p.F490F 0.37 TCGA-BF-AAP1-01 4 55962485 55962485 C T KDR Missense_Mutation p.R880Q 0.37 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP1-01 4 66467825 66467825 C T EPHA5 Silent p.K148K 0.51 TCGA-BF-AAP1-01 4 69512924 69512924 G A UGT2B15 Silent p.F497F 0.50 TCGA-BF-AAP1-01 4 69795473 69795473 C T UGT2A3 3'UTR 0.34 TCGA-BF-AAP1-01 4 70079739 70079739 C T UGT2B11 Silent p.Q234Q 0.42 TCGA-BF-AAP1-01 4 70146218 70146218 G A UGT2B28 5'UTR 0.33 TCGA-BF-AAP1-01 4 70160402 70160402 C T UGT2B28 Missense_Mutation p.H489Y 0.40 tolerated(0.06) probably_damaging(1) TCGA-BF-AAP1-01 4 70505136 70505136 C T UGT2A2 Missense_Mutation p.D75N 0.42 tolerated(0.28) benign(0.001) TCGA-BF-AAP1-01 4 71467367 71467367 C T AMBN Missense_Mutation p.P176L 0.42 deleterious(0.04) possibly_damaging(0.899) TCGA-BF-AAP1-01 4 71844867 71844867 C T MOB1B Silent p.F149F 0.48 TCGA-BF-AAP1-01 4 81187902 81187902 G A FGF5 5'UTR 0.54 TCGA-BF-AAP1-01 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.37 tolerated(0.18) possibly_damaging(0.643) TCGA-BF-AAP1-01 4 84368113 84368113 G A HELQ Missense_Mutation p.P423S 0.54 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 4 88766901 88766901 C T MEPE Missense_Mutation p.T294I 0.39 tolerated(0.76) benign(0.002) TCGA-BF-AAP1-01 4 96761451 96761451 C T PDHA2 Silent p.V50V 0.34 TCGA-BF-AAP1-01 5 101572631 101572631 A G SLCO4C1 Silent p.H702H 0.53 TCGA-BF-AAP1-01 5 101606491 101606491 C T SLCO4C1 Silent p.R213R 0.26 TCGA-BF-AAP1-01 5 101816000 101816000 C T SLCO6A1 Missense_Mutation p.G166E 0.38 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 5 10290849 10290849 G A CMBL Missense_Mutation p.P9L 0.43 tolerated(0.16) possibly_damaging(0.621) TCGA-BF-AAP1-01 5 110428024 110428024 C T WDR36 Missense_Mutation p.S13L 0.36 tolerated_low_confidence(0.34) benign(0) TCGA-BF-AAP1-01 5 110456196 110456196 C T WDR36 Missense_Mutation p.S692F 0.44 tolerated(0.1) probably_damaging(0.949) TCGA-BF-AAP1-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.38 TCGA-BF-AAP1-01 5 112178048 112178048 C T APC Missense_Mutation p.L2253F 0.40 benign(0.004) TCGA-BF-AAP1-01 5 112868618 112868618 C T YTHDC2 Missense_Mutation p.P240S 0.33 tolerated(0.06) possibly_damaging(0.461) TCGA-BF-AAP1-01 5 121187857 121187857 C T FTMT Missense_Mutation p.R67W 0.38 deleterious(0) possibly_damaging(0.477) TCGA-BF-AAP1-01 5 13717505 13717505 G A DNAH5 Silent p.I4208I 0.54 TCGA-BF-AAP1-01 5 137756555 137756555 C T KDM3B Silent p.S1292S 0.51 TCGA-BF-AAP1-01 5 13811867 13811867 G A DNAH5 Silent p.F2432F 0.43 TCGA-BF-AAP1-01 5 138723358 138723358 G A MZB1 3'UTR 0.50 TCGA-BF-AAP1-01 5 139939955 139939955 G A APBB3 Silent p.A396A 0.47 TCGA-BF-AAP1-01 5 140175466 140175466 G A PCDHA2 Missense_Mutation p.G306E 0.40 deleterious_low_confidence(0.01) benign(0.106) TCGA-BF-AAP1-01 5 140183128 140183128 C T PCDHA3 Silent p.S782S 0.55 TCGA-BF-AAP1-01 5 140236925 140236925 C T PCDHA10 Missense_Mutation p.S431L 0.45 tolerated_low_confidence(0.06) benign(0.177) TCGA-BF-AAP1-01 5 140481339 140481339 G A PCDHB3 Missense_Mutation p.S369N 0.20 deleterious_low_confidence(0.03) benign(0.023) TCGA-BF-AAP1-01 5 140531864 140531864 C T PCDHB6 Missense_Mutation p.P676S 0.45 tolerated(0.1) benign(0.007) TCGA-BF-AAP1-01 5 140554580 140554580 C T PCDHB7 Missense_Mutation p.R722C 0.23 tolerated_low_confidence(0.09) benign(0.007) TCGA-BF-AAP1-01 5 140581585 140581585 C T PCDHB11 Silent p.S746S 0.47 TCGA-BF-AAP1-01 5 140735042 140735042 G A PCDHGA4 Missense_Mutation p.R92K 0.42 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-BF-AAP1-01 5 140739844 140739844 G A PCDHGB2 Missense_Mutation p.G48R 0.47 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 5 140754369 140754369 C T PCDHGA6 Missense_Mutation p.P240L 0.52 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BF-AAP1-01 5 141023849 141023849 G A FCHSD1 Missense_Mutation p.P600L 0.56 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 5 141248539 141248539 G A PCDH1 Silent p.P166P 0.35 TCGA-BF-AAP1-01 5 141367360 141367360 C T RNF14 3'UTR 0.47 TCGA-BF-AAP1-01 5 145641181 145641181 C T RBM27 Nonsense_Mutation p.R668* 0.39 TCGA-BF-AAP1-01 5 14758606 14758606 G A ANKH Missense_Mutation p.P139S 0.48 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 5 151777644 151777644 C T NMUR2 Missense_Mutation p.R263K 0.35 deleterious(0.05) probably_damaging(0.93) TCGA-BF-AAP1-01 5 154396704 154396704 G A KIF4B Silent p.G1095G 0.47 TCGA-BF-AAP1-01 5 156479612 156479612 G A HAVCR1 Nonsense_Mutation p.R145* 0.43 TCGA-BF-AAP1-01 5 163579 163580 - C PLEKHG4B Frame_Shift_Ins p.V778Gfs*17 0.26 TCGA-BF-AAP1-01 5 168180001 168180001 G A SLIT3 Silent p.I644I 0.46 TCGA-BF-AAP1-01 5 179980424 179980424 C T CNOT6 Missense_Mutation p.P113L 0.32 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP1-01 5 19473263 19473263 C T CDH18 3'UTR 0.42 TCGA-BF-AAP1-01 5 23521170 23521170 G A PRDM9 Silent p.L130L 0.50 TCGA-BF-AAP1-01 5 26881634 26881634 C T CDH9 Missense_Mutation p.D661N 0.47 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 5 26915882 26915882 G A CDH9 Missense_Mutation p.R127C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 5 31267505 31267505 C T CDH6 5'UTR 0.61 TCGA-BF-AAP1-01 5 31318021 31318021 G A CDH6 Silent p.V624V 0.48 TCGA-BF-AAP1-01 5 31323525 31323525 G A CDH6 3'UTR 0.29 TCGA-BF-AAP1-01 5 33892048 33892048 G A ADAMTS12 5'UTR 0.69 TCGA-BF-AAP1-01 5 35010230 35010230 C T AGXT2 Missense_Mutation p.E405K 0.40 tolerated(0.42) benign(0.003) TCGA-BF-AAP1-01 5 36039796 36039796 G A UGT3A2 Silent p.F286F 0.47 TCGA-BF-AAP1-01 5 36253796 36253796 T G RANBP3L Missense_Mutation p.T399P 0.45 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 5 38903998 38903998 C T OSMR Missense_Mutation p.P336S 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-BF-AAP1-01 5 39376202 39376202 G A DAB2 Missense_Mutation p.P715L 0.39 tolerated(0.11) benign(0.014) TCGA-BF-AAP1-01 5 40854450 40854450 C T CARD6 Nonsense_Mutation p.Q1006* 0.39 TCGA-BF-AAP1-01 5 40950020 40950020 G A C7 Missense_Mutation p.E333K 0.38 tolerated(0.14) benign(0.014) TCGA-BF-AAP1-01 5 41049415 41049415 C T MROH2B Missense_Mutation p.E490K 0.40 deleterious(0.03) benign(0.008) TCGA-BF-AAP1-01 5 44809449 44809449 C T MRPS30 Missense_Mutation p.P129S 0.45 tolerated(0.73) benign(0.003) TCGA-BF-AAP1-01 5 44809450 44809450 C T MRPS30 Missense_Mutation p.P129L 0.42 tolerated(0.31) benign(0.038) TCGA-BF-AAP1-01 5 45262154 45262154 C T HCN1 Missense_Mutation p.G848R 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP1-01 5 60240800 60240800 C A ERCC8 Missense_Mutation p.L12F 0.41 tolerated(0.21) benign(0.401) TCGA-BF-AAP1-01 5 65118617 65118617 G A NLN Missense_Mutation p.M663I 0.35 tolerated(0.07) benign(0.05) TCGA-BF-AAP1-01 5 66479353 66479353 G A CD180 Missense_Mutation p.P440S 0.40 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP1-01 5 66480323 66480323 C T CD180 Missense_Mutation p.M116I 0.41 tolerated(0.22) benign(0.003) TCGA-BF-AAP1-01 5 76932937 76932937 C T OTP Silent p.V52V 0.57 TCGA-BF-AAP1-01 5 78587122 78587122 G A JMY Silent p.E509E 0.47 TCGA-BF-AAP1-01 5 79025490 79025490 C T CMYA5 Missense_Mutation p.P301L 0.29 benign(0.054) TCGA-BF-AAP1-01 5 79030152 79030152 C T CMYA5 Missense_Mutation p.S1855L 0.42 benign(0.001) TCGA-BF-AAP1-01 5 79368385 79368385 G A THBS4 Intron 0.33 TCGA-BF-AAP1-01 5 82948487 82948487 G A HAPLN1 Missense_Mutation p.S86L 0.35 tolerated(0.19) benign(0.028) TCGA-BF-AAP1-01 5 89985761 89985761 G A GPR98 Missense_Mutation p.D2192N 0.47 probably_damaging(0.945) TCGA-BF-AAP1-01 5 93076976 93076976 G A POU5F2 Silent p.G98G 0.58 TCGA-BF-AAP1-01 5 93388905 93388905 T A FAM172A Missense_Mutation p.E45V 0.60 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 5 96078409 96078409 C T CAST Silent p.T342T 0.42 TCGA-BF-AAP1-01 6 124979513 124979513 C T NKAIN2 Missense_Mutation p.S152F 0.77 deleterious(0) possibly_damaging(0.64) TCGA-BF-AAP1-01 6 131199260 131199260 G A EPB41L2 Missense_Mutation p.S676F 0.89 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP1-01 6 136494986 136494986 C T PDE7B Nonsense_Mutation p.R255* 0.85 TCGA-BF-AAP1-01 6 136500235 136500235 G A PDE7B Missense_Mutation p.D302N 0.91 tolerated(0.15) benign(0.077) TCGA-BF-AAP1-01 6 136597433 136597433 C T BCLAF1 Silent p.Q410Q 0.28 TCGA-BF-AAP1-01 6 152746670 152746670 C T SYNE1 Missense_Mutation p.E1705K 0.71 benign(0.176) TCGA-BF-AAP1-01 6 160670390 160670390 G A SLC22A2 Missense_Mutation p.R234W 0.83 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP1-01 6 161127542 161127543 AA G PLG Frame_Shift_Del p.K52Nfs*23 0.40 TCGA-BF-AAP1-01 6 167719447 167719447 G A UNC93A Silent p.V295V 0.81 TCGA-BF-AAP1-01 6 17826029 17826029 C T KIF13A Missense_Mutation p.E586K 0.28 deleterious(0) benign(0.353) TCGA-BF-AAP1-01 6 17826167 17826167 T A KIF13A Splice_Site p.X540_splice 0.30 TCGA-BF-AAP1-01 6 22294671 22294671 G A PRL Silent p.I57I 0.30 TCGA-BF-AAP1-01 6 25820027 25820027 C T SLC17A1 Silent p.K108K 0.29 TCGA-BF-AAP1-01 6 26184169 26184169 T C HIST1H2BE Missense_Mutation p.V49A 0.26 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-BF-AAP1-01 6 26374570 26374570 C T BTN3A2 Missense_Mutation p.S327L 0.22 tolerated_low_confidence(0.1) benign(0) TCGA-BF-AAP1-01 6 28228261 28228261 C T NKAPL Missense_Mutation p.S371F 0.37 deleterious(0.05) possibly_damaging(0.659) TCGA-BF-AAP1-01 6 28539829 28539829 G T SCAND3 Silent p.T1279T 0.10 TCGA-BF-AAP1-01 6 30131822 30131822 G A TRIM15 Missense_Mutation p.E121K 0.31 tolerated(0.06) benign(0.253) TCGA-BF-AAP1-01 6 30867661 30867661 C T DDR1 3'UTR 0.53 TCGA-BF-AAP1-01 6 3105965 3105965 C T RIPK1 Missense_Mutation p.P419L 0.32 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP1-01 6 31079573 31079573 C T C6orf15 Missense_Mutation p.G188E 0.38 tolerated(0.27) probably_damaging(0.988) TCGA-BF-AAP1-01 6 31083910 31083910 G A CDSN Silent p.I494I 0.19 TCGA-BF-AAP1-01 6 31617060 31617060 G A BAG6 Silent p.S113S 0.32 TCGA-BF-AAP1-01 6 31637740 31637740 C T CSNK2B 3'UTR 0.30 TCGA-BF-AAP1-01 6 32007854 32007854 G A CYP21A2 Missense_Mutation p.E271K 0.34 tolerated(0.37) benign(0.088) TCGA-BF-AAP1-01 6 32172130 32172130 C T NOTCH4 Missense_Mutation p.E968K 0.39 deleterious(0.04) benign(0.029) TCGA-BF-AAP1-01 6 33162474 33162474 G T RXRB Silent p.P533P 0.39 TCGA-BF-AAP1-01 6 33162497 33162497 G A RXRB Missense_Mutation p.L526F 0.28 deleterious(0.03) probably_damaging(0.994) TCGA-BF-AAP1-01 6 34101149 34101149 G A GRM4 Missense_Mutation p.S42F 0.23 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 6 34511894 34511894 G A SPDEF Silent p.T113T 0.24 TCGA-BF-AAP1-01 6 35480433 35480433 G A TULP1 Missense_Mutation p.P28S 0.23 deleterious_low_confidence(0.01) benign(0.001) TCGA-BF-AAP1-01 6 38997979 38997979 G A DNAH8 Silent p.Q4428Q 0.39 TCGA-BF-AAP1-01 6 41318601 41318601 G A NCR2 Silent p.%3D 0.33 TCGA-BF-AAP1-01 6 42236443 42236443 G A TRERF1 Missense_Mutation p.R296C 0.27 tolerated_low_confidence(0.11) possibly_damaging(0.689) TCGA-BF-AAP1-01 6 43227359 43227359 C T TTBK1 Missense_Mutation p.R447C 0.27 probably_damaging(0.972) TCGA-BF-AAP1-01 6 46216624 46216624 C T RCAN2 Missense_Mutation p.E79K 0.22 deleterious(0) benign(0.277) TCGA-BF-AAP1-01 6 46658482 46658482 C T TDRD6 Silent p.L873L 0.29 TCGA-BF-AAP1-01 6 46851988 46851988 C T GPR116 Missense_Mutation p.E117K 0.66 tolerated(0.21) benign(0.115) TCGA-BF-AAP1-01 6 47682057 47682057 G A GPR115 Nonsense_Mutation p.W359* 0.20 TCGA-BF-AAP1-01 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.20 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-BF-AAP1-01 6 53883845 53883845 G A MLIP Missense_Mutation p.E7K 0.40 tolerated(0.09) benign(0.04) TCGA-BF-AAP1-01 6 54805261 54805261 G A FAM83B Missense_Mutation p.E498K 0.19 tolerated(0.07) benign(0.068) TCGA-BF-AAP1-01 6 54805766 54805766 C A FAM83B Missense_Mutation p.P666Q 0.26 tolerated(0.14) possibly_damaging(0.834) TCGA-BF-AAP1-01 6 55214917 55214917 G A GFRAL Nonsense_Mutation p.W115* 0.18 TCGA-BF-AAP1-01 6 55216296 55216296 C T GFRAL Missense_Mutation p.H206Y 0.28 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 6 55620465 55620465 G A BMP5 Missense_Mutation p.P411S 0.18 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP1-01 6 56484472 56484472 C T DST Intron 0.31 TCGA-BF-AAP1-01 6 70065746 70065746 C T BAI3 Nonsense_Mutation p.R1197* 0.80 TCGA-BF-AAP1-01 6 84799172 84799172 C T MRAP2 Missense_Mutation p.S197F 0.77 tolerated(0.76) benign(0.001) TCGA-BF-AAP1-01 6 87725705 87725705 C T HTR1E Missense_Mutation p.S218L 0.78 deleterious(0.04) possibly_damaging(0.566) TCGA-BF-AAP1-01 6 87725912 87725912 G A HTR1E Missense_Mutation p.R287Q 0.78 deleterious(0) probably_damaging(0.984) TCGA-BF-AAP1-01 6 88126497 88126497 C T C6ORF165 Missense_Mutation p.R195C 0.77 tolerated(0.1) probably_damaging(0.948) TCGA-BF-AAP1-01 6 88775920 88775920 G A SPACA1 Nonsense_Mutation p.W251* 0.83 TCGA-BF-AAP1-01 6 93955132 93955132 G A EPHA7 Silent p.F922F 0.79 TCGA-BF-AAP1-01 7 100349990 100349990 C T ZAN Silent p.I754I 0.38 TCGA-BF-AAP1-01 7 100484979 100484979 C T SRRT Missense_Mutation p.P672S 0.48 tolerated(0.27) probably_damaging(0.998) TCGA-BF-AAP1-01 7 100685945 100685945 G A MUC17 Missense_Mutation p.E3750K 0.33 benign(0.004) TCGA-BF-AAP1-01 7 103126739 103126739 C T RELN Silent p.G3296G 0.53 TCGA-BF-AAP1-01 7 107872961 107872961 G A NRCAM Missense_Mutation p.S79F 0.35 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP1-01 7 113519690 113519690 C T PPP1R3A Missense_Mutation p.R486Q 0.33 deleterious(0.01) benign(0.325) TCGA-BF-AAP1-01 7 117227878 117227878 C T CFTR Missense_Mutation p.S557F 0.18 deleterious(0) probably_damaging(0.976) TCGA-BF-AAP1-01 7 121674425 121674425 C T PTPRZ1 Silent p.I1759I 0.19 TCGA-BF-AAP1-01 7 121943777 121943777 C T FEZF1 Missense_Mutation p.E239K 0.36 tolerated(0.09) benign(0.004) TCGA-BF-AAP1-01 7 121943778 121943778 C T FEZF1 Silent p.S238S 0.36 TCGA-BF-AAP1-01 7 122261562 122261562 G A CADPS2 Silent p.S359S 0.54 TCGA-BF-AAP1-01 7 126079134 126079134 C T GRM8 3'UTR 0.42 TCGA-BF-AAP1-01 7 129929567 129929567 G A CPA2 Missense_Mutation p.V414M 0.11 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 7 135378904 135378904 C T SLC13A4 Missense_Mutation p.E367K 0.14 tolerated(1) benign(0.042) TCGA-BF-AAP1-01 7 135418993 135418993 C T FAM180A Silent p.R84R 0.43 TCGA-BF-AAP1-01 7 136699960 136699960 C T CHRM2 Silent p.I116I 0.22 TCGA-BF-AAP1-01 7 137773372 137773372 C T AKR1D1 Missense_Mutation p.S40L 0.51 deleterious(0.02) probably_damaging(0.975) TCGA-BF-AAP1-01 7 138522696 138522696 G A KIAA1549 Silent p.L1936L 0.36 TCGA-BF-AAP1-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.51 deleterious(0) benign(0.411) TCGA-BF-AAP1-01 7 141464887 141464887 C G TAS2R3 Missense_Mutation p.S310C 0.43 deleterious(0.01) possibly_damaging(0.739) TCGA-BF-AAP1-01 7 141629784 141629784 C T CLEC5A 3'UTR 0.54 TCGA-BF-AAP1-01 7 141730509 141730509 G A MGAM Missense_Mutation p.M474I 0.39 tolerated(0.06) benign(0.021) TCGA-BF-AAP1-01 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-BF-AAP1-01 7 142111517 142111517 C T TRBV5-7 Silent p.E73E 0.17 TCGA-BF-AAP1-01 7 142423398 142423398 C T TRBV27 Silent p.P18P 0.12 TCGA-BF-AAP1-01 7 142561409 142561409 G A EPHB6 Missense_Mutation p.G41R 0.24 tolerated(0.48) benign(0.413) TCGA-BF-AAP1-01 7 142638275 142638275 C T KEL 3'UTR 0.33 TCGA-BF-AAP1-01 7 142991338 142991338 C T CASP2 Missense_Mutation p.S164F 0.29 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP1-01 7 143793016 143793016 C T OR2A12 Silent p.I272I 0.19 TCGA-BF-AAP1-01 7 143793126 143793126 C T OR2A12 Missense_Mutation p.S309L 0.39 deleterious(0.04) benign(0.002) TCGA-BF-AAP1-01 7 143826919 143826919 C T OR2A14 Silent p.S238S 0.40 TCGA-BF-AAP1-01 7 143827001 143827001 C T OR2A14 Missense_Mutation p.P266S 0.20 tolerated(0.48) benign(0.021) TCGA-BF-AAP1-01 7 146825903 146825903 G A CNTNAP2 Missense_Mutation p.R353K 0.50 tolerated(0.31) benign(0.085) TCGA-BF-AAP1-01 7 147926753 147926753 G A CNTNAP2 Missense_Mutation p.R1088Q 0.36 deleterious(0.04) possibly_damaging(0.861) TCGA-BF-AAP1-01 7 149430407 149430407 C T KRBA1 Silent p.S787S 0.23 TCGA-BF-AAP1-01 7 150390086 150390086 G A GIMAP2 Missense_Mutation p.E238K 0.35 tolerated(0.9) benign(0.001) TCGA-BF-AAP1-01 7 150488585 150488585 G A TMEM176B 3'UTR 0.51 TCGA-BF-AAP1-01 7 151699941 151699941 G A GALNTL5 Silent p.K267K 0.34 TCGA-BF-AAP1-01 7 151893097 151893097 C T KMT2C Splice_Site p.X1425_splice 0.22 TCGA-BF-AAP1-01 7 154684347 154684347 G A DPP6 3'UTR 0.33 TCGA-BF-AAP1-01 7 154862641 154862641 C T HTR5A Missense_Mutation p.S11F 0.44 tolerated(0.45) benign(0) TCGA-BF-AAP1-01 7 155538076 155538076 C T RBM33 Missense_Mutation p.P920L 0.12 tolerated(0.09) unknown(0) TCGA-BF-AAP1-01 7 157475456 157475456 T C PTPRN2 Silent p.L654L 0.41 TCGA-BF-AAP1-01 7 20198185 20198185 C T MACC1 Missense_Mutation p.G600E 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 7 20739471 20739471 C T ABCB5 Silent p.T726T 0.12 TCGA-BF-AAP1-01 7 21698578 21698578 G A DNAH11 Missense_Mutation p.D1758N 0.29 possibly_damaging(0.746) TCGA-BF-AAP1-01 7 21760355 21760355 C T DNAH11 Missense_Mutation p.L2390F 0.33 probably_damaging(0.991) TCGA-BF-AAP1-01 7 27148066 27148066 C T HOXA3 Missense_Mutation p.S267N 0.18 deleterious(0) benign(0.134) TCGA-BF-AAP1-01 7 28547243 28547243 C T CREB5 Missense_Mutation p.P60L 0.35 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 7 30693147 30693147 G C CRHR2 Missense_Mutation p.R416G 0.40 deleterious(0.02) benign(0.064) TCGA-BF-AAP1-01 7 30793383 30793383 C T INMT Missense_Mutation p.S64L 0.20 deleterious(0) possibly_damaging(0.602) TCGA-BF-AAP1-01 7 30963620 30963620 C T AQP1 3'UTR 0.25 TCGA-BF-AAP1-01 7 31692325 31692325 C T CCDC129 Intron 0.40 TCGA-BF-AAP1-01 7 31887678 31887678 G A PDE1C Missense_Mutation p.S355F 0.37 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 7 31917588 31917588 A T PDE1C Missense_Mutation p.L223I 0.33 deleterious(0.01) possibly_damaging(0.52) TCGA-BF-AAP1-01 7 32209518 32209518 C T PDE1C Missense_Mutation p.G63R 0.40 tolerated_low_confidence(0.14) benign(0.235) TCGA-BF-AAP1-01 7 34867041 34867041 C T NPSR1 Silent p.I169I 0.38 TCGA-BF-AAP1-01 7 35242142 35242142 G A TBX20 Missense_Mutation p.S415L 0.25 deleterious_low_confidence(0.01) benign(0.081) TCGA-BF-AAP1-01 7 37272763 37272763 G A ELMO1 Silent p.F162F 0.35 TCGA-BF-AAP1-01 7 37896936 37896936 C T NME8 Missense_Mutation p.L87F 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 7 37907389 37907389 C T NME8 Missense_Mutation p.P236L 0.41 tolerated(0.72) benign(0.001) TCGA-BF-AAP1-01 7 37934103 37934103 G A NME8 Missense_Mutation p.D479N 0.21 tolerated(0.27) benign(0.284) TCGA-BF-AAP1-01 7 42972030 42972030 G A MRPL32 Silent p.A15A 0.39 TCGA-BF-AAP1-01 7 43508699 43508699 G A HECW1 Missense_Mutation p.G1032R 0.57 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP1-01 7 44578793 44578793 G A NPC1L1 Silent p.F401F 0.40 TCGA-BF-AAP1-01 7 44737090 44737090 G A OGDH Missense_Mutation p.V725M 0.52 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 7 45662302 45662302 T A ADCY1 Missense_Mutation p.L327H 0.38 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP1-01 7 47408535 47408535 G A TNS3 Missense_Mutation p.P570S 0.47 tolerated(0.07) possibly_damaging(0.831) TCGA-BF-AAP1-01 7 53103581 53103581 C T POM121L12 Missense_Mutation p.P73S 0.35 tolerated(0.32) probably_damaging(0.932) TCGA-BF-AAP1-01 7 5540304 5540304 G A FBXL18 Silent p.F532F 0.45 TCGA-BF-AAP1-01 7 62752719 62752719 G A ZNF733P RNA 0.17 TCGA-BF-AAP1-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.43 deleterious(0) possibly_damaging(0.869) TCGA-BF-AAP1-01 7 71036388 71036388 G A WBSCR17 Splice_Site p.X360_splice 0.28 TCGA-BF-AAP1-01 7 7283186 7283186 C T C1GALT1 Missense_Mutation p.S307F 0.38 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP1-01 7 75695638 75695638 C T MDH2 Silent p.S309S 0.41 TCGA-BF-AAP1-01 7 82430896 82430896 C T PCLO Missense_Mutation p.G4982E 0.15 unknown(0) TCGA-BF-AAP1-01 7 87908879 87908879 C T STEAP4 Missense_Mutation p.R405K 0.37 tolerated(0.4) benign(0) TCGA-BF-AAP1-01 7 88963452 88963452 G A ZNF804B Missense_Mutation p.E386K 0.33 deleterious(0.01) benign(0.085) TCGA-BF-AAP1-01 7 88965734 88965734 G A ZNF804B Silent p.Q1146Q 0.30 TCGA-BF-AAP1-01 7 912891 912891 C T SUN1 Missense_Mutation p.R761W 0.45 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP1-01 7 92735166 92735166 G A SAMD9 Missense_Mutation p.S82L 0.28 tolerated(0.31) benign(0.001) TCGA-BF-AAP1-01 7 94293414 94293414 C T PEG10 Silent p.I182I 0.43 TCGA-BF-AAP1-01 7 94913480 94913480 C T PPP1R9A Silent p.S1149S 0.25 TCGA-BF-AAP1-01 7 96746985 96746985 G A ACN9 5'UTR 0.38 TCGA-BF-AAP1-01 7 98257886 98257886 G A NPTX2 Missense_Mutation p.G414E 0.46 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP1-01 8 104928680 104928680 G A RIMS2 Missense_Mutation p.G651R 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP1-01 8 106814959 106814959 G A ZFPM2 Silent p.Q883Q 0.24 TCGA-BF-AAP1-01 8 108970443 108970443 G A RSPO2 Missense_Mutation p.R161C 0.66 deleterious(0) possibly_damaging(0.785) TCGA-BF-AAP1-01 8 110476905 110476905 C T PKHD1L1 Missense_Mutation p.T2615I 0.33 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP1-01 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.62 tolerated(0.46) benign(0.348) TCGA-BF-AAP1-01 8 114389332 114389332 G A CSMD3 Intron 0.56 TCGA-BF-AAP1-01 8 11996117 11996117 G A USP17L2 Silent p.L51L 0.27 TCGA-BF-AAP1-01 8 120581546 120581546 G A ENPP2 Missense_Mutation p.P713L 0.34 tolerated(0.46) benign(0.3) TCGA-BF-AAP1-01 8 124204126 124204126 C T FAM83A Silent p.F188F 0.29 TCGA-BF-AAP1-01 8 124987486 124987486 G A FER1L6 Missense_Mutation p.G208E 0.24 deleterious(0) possibly_damaging(0.848) TCGA-BF-AAP1-01 8 125131160 125131160 G A FER1L6 Missense_Mutation p.E1789K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP1-01 8 125990090 125990090 C T ZNF572 Missense_Mutation p.S527L 0.36 tolerated_low_confidence(0.23) unknown(0) TCGA-BF-AAP1-01 8 139164961 139164961 C T FAM135B Missense_Mutation p.G586E 0.31 tolerated(1) benign(0.001) TCGA-BF-AAP1-01 8 139263200 139263200 G A FAM135B Silent p.F142F 0.63 TCGA-BF-AAP1-01 8 139749787 139749787 G A COL22A1 Missense_Mutation p.P707S 0.59 unknown(0) TCGA-BF-AAP1-01 8 144940942 144940942 C T EPPK1 Silent p.E2160E 0.10 TCGA-BF-AAP1-01 8 145749701 145749701 C T LRRC14 3'UTR 0.59 TCGA-BF-AAP1-01 8 17612768 17612768 G A MTUS1 Silent p.S183S 0.68 TCGA-BF-AAP1-01 8 23003272 23003272 G A TNFRSF10D Silent p.I215I 0.70 TCGA-BF-AAP1-01 8 27099982 27099982 G A STMN4 Missense_Mutation p.P14L 0.56 deleterious(0.04) probably_damaging(1) TCGA-BF-AAP1-01 8 27321327 27321327 G A CHRNA2 Silent p.I211I 0.68 TCGA-BF-AAP1-01 8 39142340 39142340 G A ADAM32 3'UTR 0.40 TCGA-BF-AAP1-01 8 39537685 39537685 G A ADAM18 Missense_Mutation p.M587I 0.83 tolerated(0.34) benign(0.009) TCGA-BF-AAP1-01 8 40438709 40438709 G A ZMAT4 Silent p.L217L 0.29 TCGA-BF-AAP1-01 8 41566377 41566377 A G ANK1 Silent p.L672L 0.50 TCGA-BF-AAP1-01 8 48511545 48511545 G A SPIDR Nonsense_Mutation p.W444* 0.37 TCGA-BF-AAP1-01 8 48511546 48511546 G A SPIDR Nonsense_Mutation p.W444* 0.35 TCGA-BF-AAP1-01 8 49647770 49647770 C T EFCAB1 5'UTR 0.30 TCGA-BF-AAP1-01 8 49987894 49987894 C T C8orf22 3'UTR 0.58 TCGA-BF-AAP1-01 8 53536303 53536303 G A RB1CC1 3'UTR 0.45 TCGA-BF-AAP1-01 8 55533640 55533640 C T RP1 Silent p.I38I 0.28 TCGA-BF-AAP1-01 8 55542325 55542325 G A RP1 Silent p.Q1961Q 0.35 TCGA-BF-AAP1-01 8 68346351 68346351 G A CPA6 Silent p.L321L 0.29 TCGA-BF-AAP1-01 8 69358757 69358757 G A C8orf34 Intron 0.65 TCGA-BF-AAP1-01 8 70585552 70585552 G A SLCO5A1 Missense_Mutation p.P700L 0.33 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP1-01 8 76463689 76463689 C T HNF4G Missense_Mutation p.S140F 0.48 deleterious(0.04) possibly_damaging(0.872) TCGA-BF-AAP1-01 8 76468260 76468260 G A HNF4G Missense_Mutation p.G220E 0.71 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 8 77763773 77763773 G A ZFHX4 Missense_Mutation p.R1539H 0.21 possibly_damaging(0.715) TCGA-BF-AAP1-01 8 81412056 81412056 C T ZBTB10 Nonsense_Mutation p.Q434* 0.49 TCGA-BF-AAP1-01 8 8234360 8234360 C T SGK223 Missense_Mutation p.G520E 0.50 possibly_damaging(0.541) TCGA-BF-AAP1-01 8 86241944 86241944 C T CA1 Missense_Mutation p.E215K 0.25 tolerated(0.07) benign(0.381) TCGA-BF-AAP1-01 8 86250519 86250519 G A CA1 Missense_Mutation p.S66F 0.58 tolerated(0.07) probably_damaging(0.937) TCGA-BF-AAP1-01 8 93026830 93026830 G A RUNX1T1 Missense_Mutation p.R160C 0.16 deleterious(0) probably_damaging(0.941) TCGA-BF-AAP1-01 8 97274379 97274379 C T PTDSS1 Silent p.F37F 0.47 TCGA-BF-AAP1-01 8 99440838 99440838 G A KCNS2 Missense_Mutation p.D211N 0.27 deleterious(0) benign(0.118) TCGA-BF-AAP1-01 9 104432608 104432608 C T GRIN3A Missense_Mutation p.E696K 0.37 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 9 107367862 107367862 C T OR13C2 Missense_Mutation p.G16E 0.31 deleterious(0.01) possibly_damaging(0.807) TCGA-BF-AAP1-01 9 110250354 110250354 A G KLF4 Silent p.F107F 0.56 TCGA-BF-AAP1-01 9 111674626 111674626 G A IKBKAP Silent p.L369L 0.46 TCGA-BF-AAP1-01 9 112151549 112151549 G A PTPN3 Silent p.L739L 0.41 TCGA-BF-AAP1-01 9 113065942 113065942 C T TXNDC8 3'UTR 0.55 TCGA-BF-AAP1-01 9 113166739 113166739 A T SVEP1 Silent p.P3178P 0.37 TCGA-BF-AAP1-01 9 113243699 113243699 G A SVEP1 Missense_Mutation p.P730S 0.50 benign(0.081) TCGA-BF-AAP1-01 9 113245926 113245926 G A SVEP1 Nonsense_Mutation p.Q660* 0.40 TCGA-BF-AAP1-01 9 113547979 113547979 G A MUSK Missense_Mutation p.G587R 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 9 114904713 114904713 A T SUSD1 Missense_Mutation p.L198Q 0.37 tolerated(0.13) probably_damaging(0.975) TCGA-BF-AAP1-01 9 116080839 116080839 G A WDR31 Silent p.L287L 0.43 TCGA-BF-AAP1-01 9 117187278 117187278 C T DFNB31 Missense_Mutation p.G398E 0.57 tolerated(0.1) benign(0.066) TCGA-BF-AAP1-01 9 125273630 125273630 C T OR1J2 Silent p.L184L 0.38 TCGA-BF-AAP1-01 9 125673677 125673677 G A ZBTB6 Silent p.I225I 0.44 TCGA-BF-AAP1-01 9 125680732 125680732 C T ZBTB26 3'UTR 0.60 TCGA-BF-AAP1-01 9 127911983 127911983 G A PPP6C Missense_Mutation p.P333L 0.54 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP1-01 9 131346650 131346650 C T SPTAN1 Silent p.A761A 0.28 TCGA-BF-AAP1-01 9 135974173 135974173 G A RALGDS Intron 0.35 TCGA-BF-AAP1-01 9 139264779 139264779 C T CARD9 Silent p.K306K 0.44 TCGA-BF-AAP1-01 9 139353963 139353963 C A SEC16A Missense_Mutation p.A1746S 0.29 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP1-01 9 14748421 14748421 C A FREM1 Missense_Mutation p.R1925M 0.80 deleterious(0.02) benign(0.064) TCGA-BF-AAP1-01 9 14859217 14859217 G A FREM1 Missense_Mutation p.R199C 0.79 deleterious(0) possibly_damaging(0.836) TCGA-BF-AAP1-01 9 15185360 15185360 G A TTC39B Missense_Mutation p.P511L 0.81 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP1-01 9 27197551 27197551 C T TEK Silent p.A621A 0.79 TCGA-BF-AAP1-01 9 37729745 37729745 G A FRMPD1 Silent p.K211K 0.42 TCGA-BF-AAP1-01 9 441360 441360 G A DOCK8 Silent p.R1766R 0.41 TCGA-BF-AAP1-01 9 4793151 4793151 G A RCL1 Silent p.L20L 0.35 TCGA-BF-AAP1-01 9 6328556 6328556 G A TPD52L3 5'UTR 0.47 TCGA-BF-AAP1-01 9 74817501 74817501 C T GDA Missense_Mutation p.P76L 0.50 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 9 74865868 74865868 G A GDA 3'Flank 0.29 TCGA-BF-AAP1-01 9 77353522 77353522 C T TRPM6 Silent p.L1859L 0.39 TCGA-BF-AAP1-01 9 77377711 77377711 G A TRPM6 Silent p.P1292P 0.48 TCGA-BF-AAP1-01 9 78848418 78848418 G A PCSK5 Nonsense_Mutation p.W924* 0.55 TCGA-BF-AAP1-01 9 79321556 79321556 G A PRUNE2 Silent p.P1878P 0.46 TCGA-BF-AAP1-01 9 79321557 79321557 G T PRUNE2 Missense_Mutation p.P1878H 0.42 tolerated(0.45) possibly_damaging(0.885) TCGA-BF-AAP1-01 9 79324331 79324331 G A PRUNE2 Silent p.N953N 0.43 TCGA-BF-AAP1-01 9 79968394 79968394 C T VPS13A Missense_Mutation p.R2497C 0.26 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 9 8319899 8319899 C T PTPRD Missense_Mutation p.G1868R 0.48 deleterious(0) probably_damaging(1) TCGA-BF-AAP1-01 9 85622385 85622385 C T RASEF Missense_Mutation p.R332Q 0.50 deleterious(0.02) benign(0.241) TCGA-BF-AAP1-01 9 95796901 95796901 G A FGD3 Missense_Mutation p.E622K 0.47 tolerated(1) benign(0.007) TCGA-BF-AAP1-01 9 96435917 96435917 C T PHF2 Missense_Mutation p.S800F 0.61 deleterious(0.02) unknown(0) TCGA-BF-AAP1-01 9 99060727 99060727 C T HSD17B3 Missense_Mutation p.D58N 0.43 deleterious(0) probably_damaging(0.978) TCGA-BF-AAP1-01 9 990862 990862 C T DMRT3 Missense_Mutation p.P426S 0.48 tolerated_low_confidence(0.21) benign(0) TCGA-BF-AAP1-01 9 99304122 99304122 G A CDC14B Missense_Mutation p.H184Y 0.41 tolerated(0.14) benign(0.002) TCGA-BF-AAP1-01 X 10181791 10181791 C T CLCN4 Silent p.I549I 0.89 TCGA-BF-AAP1-01 X 105450231 105450231 C T MUM1L1 Missense_Mutation p.P269L 0.79 deleterious(0.02) benign(0.023) TCGA-BF-AAP1-01 X 105876432 105876432 T G CXorf57 Missense_Mutation p.V418G 0.86 deleterious(0) probably_damaging(0.974) TCGA-BF-AAP1-01 X 106840677 106840677 C T FRMPD3 Missense_Mutation p.S556F 0.86 deleterious(0) possibly_damaging(0.738) TCGA-BF-AAP1-01 X 107811989 107811989 G A COL4A5 Missense_Mutation p.G108R 0.89 unknown(0) TCGA-BF-AAP1-01 X 107976767 107976767 G A IRS4 Silent p.P936P 0.93 TCGA-BF-AAP1-01 X 109697268 109697268 C T RGAG1 Silent p.F1141F 0.89 TCGA-BF-AAP1-01 X 110496281 110496281 G A CAPN6 Missense_Mutation p.S154F 0.72 deleterious(0.03) probably_damaging(0.951) TCGA-BF-AAP1-01 X 110544786 110544786 C T DCX 3'UTR 0.89 TCGA-BF-AAP1-01 X 111698735 111698735 G A ZCCHC16 Missense_Mutation p.R260Q 0.90 tolerated(0.26) benign(0.197) TCGA-BF-AAP1-01 X 114238629 114238629 G A IL13RA2 3'UTR 0.87 TCGA-BF-AAP1-01 X 114419042 114419042 C T LRCH2 Missense_Mutation p.V185I 0.88 tolerated(1) possibly_damaging(0.824) TCGA-BF-AAP1-01 X 114537897 114537897 G A LUZP4 Missense_Mutation p.G86R 0.80 tolerated(1) benign(0.004) TCGA-BF-AAP1-01 X 117044039 117044039 A T KLHL13 Silent p.V200V 0.87 TCGA-BF-AAP1-01 X 119512575 119512575 G A ATP1B4 Missense_Mutation p.E287K 0.91 tolerated(0.84) probably_damaging(0.973) TCGA-BF-AAP1-01 X 12939545 12939545 C T TLR8 Missense_Mutation p.P796S 0.92 deleterious(0.03) probably_damaging(0.948) TCGA-BF-AAP1-01 X 129799713 129799713 T A ENOX2 Silent p.I335I 1.00 TCGA-BF-AAP1-01 X 130410017 130410017 C T IGSF1 Silent p.G943G 0.90 TCGA-BF-AAP1-01 X 130419131 130419131 C T IGSF1 Intron 0.88 TCGA-BF-AAP1-01 X 14027019 14027019 C T GEMIN8 3'UTR 0.88 TCGA-BF-AAP1-01 X 140985556 140985556 G A MAGEC3 Missense_Mutation p.D624N 0.83 tolerated(0.15) probably_damaging(0.971) TCGA-BF-AAP1-01 X 1460667 1460667 C T IL3RA Silent p.L3L 0.45 TCGA-BF-AAP1-01 X 150913013 150913013 G A CNGA2 3'UTR 1.00 TCGA-BF-AAP1-01 X 151336803 151336803 G A GABRA3 Missense_Mutation p.S459F 0.92 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP1-01 X 151909284 151909284 G A CSAG1 3'UTR 0.89 TCGA-BF-AAP1-01 X 153050556 153050556 G A SRPK3 Missense_Mutation p.E483K 0.79 deleterious(0) possibly_damaging(0.587) TCGA-BF-AAP1-01 X 16168512 16168512 C T GRPR Silent p.I166I 0.94 TCGA-BF-AAP1-01 X 27766014 27766014 C T DCAF8L2 Silent p.F334F 0.87 TCGA-BF-AAP1-01 X 34149939 34149939 G A FAM47A Silent p.L153L 1.00 TCGA-BF-AAP1-01 X 41204748 41204748 G A DDX3X Nonsense_Mutation p.W421* 0.97 TCGA-BF-AAP1-01 X 48214693 48214693 G A SSX3 5'UTR 0.85 TCGA-BF-AAP1-01 X 49455884 49455884 C T PAGE1 Missense_Mutation p.R87Q 0.89 tolerated(0.15) benign(0) TCGA-BF-AAP1-01 X 57358110 57358110 G A FAAH2 Silent p.K164K 0.91 TCGA-BF-AAP1-01 X 70343497 70343497 C T MED12 Silent p.S557S 1.00 TCGA-BF-AAP1-01 X 72434195 72434195 C T NAP1L2 Missense_Mutation p.G45E 0.83 tolerated_low_confidence(0.31) benign(0.002) TCGA-BF-AAP1-01 X 73961369 73961369 G A KIAA2022 Missense_Mutation p.S1008F 0.78 deleterious(0) possibly_damaging(0.708) TCGA-BF-AAP1-01 X 78427324 78427324 C T GPR174 Missense_Mutation p.H274Y 0.90 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP1-01 X 78427482 78427482 C T GPR174 Silent p.S326S 0.71 TCGA-BF-AAP1-01 Y 16952711 16952711 G A NLGN4Y Missense_Mutation p.E674K 0.86 deleterious(0.01) probably_damaging(0.955) TCGA-BF-AAP1-01 Y 23562895 23562895 G A RBMY2EP RNA 0.89 TCGA-BF-AAP2-01 10 103900555 103900555 C T PPRC1 Nonsense_Mutation p.Q764* 0.31 TCGA-BF-AAP2-01 10 104353807 104353807 C T SUFU Silent p.I247I 0.41 TCGA-BF-AAP2-01 10 111640662 111640662 G A XPNPEP1 Missense_Mutation p.P357S 0.43 deleterious(0.01) possibly_damaging(0.698) TCGA-BF-AAP2-01 10 111890246 111890246 T C ADD3 Splice_Site p.X578_splice 0.45 TCGA-BF-AAP2-01 10 118351933 118351933 C T PNLIPRP1 Silent p.L70L 0.43 TCGA-BF-AAP2-01 10 118969155 118969155 G A KCNK18 Missense_Mutation p.R167Q 0.41 tolerated(0.27) benign(0.005) TCGA-BF-AAP2-01 10 120353822 120353822 G A PRLHR Missense_Mutation p.A312V 0.13 deleterious(0.02) benign(0.139) TCGA-BF-AAP2-01 10 123842772 123842772 C T TACC2 Missense_Mutation p.P253S 0.38 benign(0.026) TCGA-BF-AAP2-01 10 123843167 123843167 G A TACC2 Silent p.K384K 0.42 TCGA-BF-AAP2-01 10 123843467 123843467 G A TACC2 Silent p.G484G 0.36 TCGA-BF-AAP2-01 10 123846693 123846693 C T TACC2 Missense_Mutation p.L1560F 0.38 possibly_damaging(0.736) TCGA-BF-AAP2-01 10 123974921 123974921 G A TACC2 Silent p.V2433V 0.48 TCGA-BF-AAP2-01 10 124008301 124008301 C T TACC2 Silent p.L2846L 0.42 TCGA-BF-AAP2-01 10 124050659 124050659 G A BTBD16 Silent p.L180L 0.27 TCGA-BF-AAP2-01 10 124248418 124248418 G A HTRA1 Missense_Mutation p.G158E 0.34 deleterious(0.01) possibly_damaging(0.545) TCGA-BF-AAP2-01 10 124329697 124329697 G A DMBT1 Silent p.E37E 0.29 TCGA-BF-AAP2-01 10 124345643 124345643 C T DMBT1 Silent p.V509V 0.47 TCGA-BF-AAP2-01 10 124345857 124345857 C T DMBT1 Missense_Mutation p.H581Y 0.25 deleterious(0.01) unknown(0) TCGA-BF-AAP2-01 10 124392828 124392828 C T DMBT1 Silent p.Y2044Y 0.25 TCGA-BF-AAP2-01 10 124914450 124914450 A T BUB3 Missense_Mutation p.E6V 0.34 deleterious(0) possibly_damaging(0.642) TCGA-BF-AAP2-01 10 125805593 125805593 G A CHST15 Missense_Mutation p.R46C 0.31 tolerated_low_confidence(0.07) benign(0.001) TCGA-BF-AAP2-01 10 128150033 128150033 G A C10orf90 Silent p.S552S 0.50 TCGA-BF-AAP2-01 10 129902716 129902716 G A MKI67 Missense_Mutation p.S2463F 0.05 deleterious(0) possibly_damaging(0.661) TCGA-BF-AAP2-01 10 134218827 134218827 G A PWWP2B Missense_Mutation p.G275S 0.39 deleterious(0.04) probably_damaging(1) TCGA-BF-AAP2-01 10 134598472 134598472 G A NKX6-2 Missense_Mutation p.S261L 0.37 deleterious_low_confidence(0.03) benign(0.296) TCGA-BF-AAP2-01 10 134910516 134910516 G A GPR123 Silent p.G14G 0.39 TCGA-BF-AAP2-01 10 135000036 135000036 A C KNDC1 Missense_Mutation p.Q395P 0.30 tolerated(0.34) benign(0.021) TCGA-BF-AAP2-01 10 135053568 135053568 G A VENTX Missense_Mutation p.G179S 0.45 tolerated(0.33) benign(0.015) TCGA-BF-AAP2-01 10 135053740 135053740 C T VENTX Missense_Mutation p.S236L 0.38 deleterious_low_confidence(0.04) benign(0) TCGA-BF-AAP2-01 10 15590512 15590512 C T ITGA8 Missense_Mutation p.G941E 0.45 deleterious(0.01) benign(0.24) TCGA-BF-AAP2-01 10 21074800 21074800 G A NEBL Missense_Mutation p.S974F 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 10 21169783 21169783 G A NEBL Silent p.A140A 0.27 TCGA-BF-AAP2-01 10 24832631 24832631 G A KIAA1217 Missense_Mutation p.E1478K 0.30 deleterious(0.04) possibly_damaging(0.631) TCGA-BF-AAP2-01 10 25887771 25887771 C T GPR158 Silent p.C1072C 0.42 TCGA-BF-AAP2-01 10 26792132 26792132 G A APBB1IP Missense_Mutation p.E154K 0.44 tolerated(0.27) benign(0.001) TCGA-BF-AAP2-01 10 26800763 26800763 C T APBB1IP Missense_Mutation p.L207F 0.40 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 10 27405177 27405177 A G YME1L1 Missense_Mutation p.L663P 0.43 deleterious(0) probably_damaging(0.987) TCGA-BF-AAP2-01 10 28023636 28023636 G A MKX Missense_Mutation p.S196L 0.46 tolerated(0.09) benign(0.098) TCGA-BF-AAP2-01 10 28023718 28023718 C T MKX Missense_Mutation p.G169R 0.18 tolerated(0.1) probably_damaging(1) TCGA-BF-AAP2-01 10 28378684 28378684 C T MPP7 Missense_Mutation p.D347N 0.53 tolerated(0.12) probably_damaging(0.982) TCGA-BF-AAP2-01 10 29599928 29599928 G A LYZL1 Nonsense_Mutation p.W175* 0.43 TCGA-BF-AAP2-01 10 30316988 30316988 C T KIAA1462 Missense_Mutation p.E697K 0.17 deleterious(0.01) probably_damaging(0.944) TCGA-BF-AAP2-01 10 34408622 34408622 A G PARD3 Missense_Mutation p.V1199A 0.25 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-BF-AAP2-01 10 34420423 34420423 G A PARD3 Missense_Mutation p.R1173C 0.13 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 10 35928846 35928846 G A FZD8 Silent p.F504F 0.28 TCGA-BF-AAP2-01 10 37421167 37421167 G A ANKRD30A Splice_Site p.X115_splice 0.30 TCGA-BF-AAP2-01 10 44866869 44866869 G A CXCL12 3'UTR 0.60 TCGA-BF-AAP2-01 10 44871439 44871439 C T CXCL12 3'Flank 0.43 TCGA-BF-AAP2-01 10 45477999 45477999 C T RASSF4 Missense_Mutation p.L57F 0.58 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 10 47086818 47086818 C T NPY4R Missense_Mutation p.P12L 0.14 tolerated(0.21) benign(0.008) TCGA-BF-AAP2-01 10 47087258 47087258 G A NPY4R Missense_Mutation p.G159R 0.17 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP2-01 10 48388982 48388982 G A RBP3 Silent p.F632F 0.38 TCGA-BF-AAP2-01 10 50315984 50315984 C T VSTM4 Missense_Mutation p.E38K 0.21 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 10 50959953 50959953 C T OGDHL Silent p.Q223Q 0.23 TCGA-BF-AAP2-01 10 5144399 5144399 G A AKR1C3 Missense_Mutation p.R226Q 0.43 tolerated(0.51) benign(0.002) TCGA-BF-AAP2-01 10 52008272 52008272 G A ASAH2 Silent p.I33I 0.46 TCGA-BF-AAP2-01 10 55582574 55582574 C T PCDH15 Missense_Mutation p.E1640K 0.12 tolerated_low_confidence(0.13) benign(0.001) TCGA-BF-AAP2-01 10 5789268 5789268 G A FAM208B Missense_Mutation p.R1295K 0.27 tolerated(0.1) benign(0.043) TCGA-BF-AAP2-01 10 61012623 61012623 G A FAM13C Missense_Mutation p.P490S 0.40 tolerated(0.67) benign(0.077) TCGA-BF-AAP2-01 10 61413959 61413959 C T SLC16A9 Silent p.Q275Q 0.12 TCGA-BF-AAP2-01 10 61819744 61819744 C T ANK3 Intron 0.32 TCGA-BF-AAP2-01 10 61835121 61835121 G A ANK3 Missense_Mutation p.P1840S 0.34 probably_damaging(0.992) TCGA-BF-AAP2-01 10 61840342 61840342 G A ANK3 Missense_Mutation p.S1462F 0.57 possibly_damaging(0.728) TCGA-BF-AAP2-01 10 6553001 6553001 G A PRKCQ Silent p.L92L 0.34 TCGA-BF-AAP2-01 10 69881314 69881314 A G MYPN Missense_Mutation p.N40S 0.43 tolerated(0.24) benign(0.002) TCGA-BF-AAP2-01 10 69970312 69970312 C T MYPN 3'UTR 0.24 TCGA-BF-AAP2-01 10 71849824 71849824 C T H2AFY2 Silent p.L61L 0.38 TCGA-BF-AAP2-01 10 71853509 71853509 G A H2AFY2 Missense_Mutation p.D166N 0.38 tolerated(0.3) benign(0.001) TCGA-BF-AAP2-01 10 71855426 71855426 G A H2AFY2 Missense_Mutation p.S202N 0.29 deleterious(0) probably_damaging(0.911) TCGA-BF-AAP2-01 10 7230609 7230609 G A SFMBT2 Silent p.F595F 0.12 TCGA-BF-AAP2-01 10 72532279 72532279 C T TBATA Missense_Mutation p.E321K 0.36 deleterious(0.02) possibly_damaging(0.607) TCGA-BF-AAP2-01 10 72536930 72536930 G A TBATA Silent p.L223L 0.45 TCGA-BF-AAP2-01 10 73464737 73464737 C T CDH23 Missense_Mutation p.R527C 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-BF-AAP2-01 10 73545417 73545417 G A CDH23 Silent p.L1919L 0.44 TCGA-BF-AAP2-01 10 75071635 75071635 G A TTC18 Missense_Mutation p.P444L 0.38 tolerated(0.21) possibly_damaging(0.737) TCGA-BF-AAP2-01 10 75082771 75082771 G A TTC18 Missense_Mutation p.R358W 0.52 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 10 75457312 75457312 G A AGAP5 Missense_Mutation p.R68C 0.36 tolerated_low_confidence(0.23) benign(0.333) TCGA-BF-AAP2-01 10 75525630 75525630 C T SEC24C Missense_Mutation p.S480F 0.08 tolerated(0.24) probably_damaging(1) TCGA-BF-AAP2-01 10 78729807 78729807 G A KCNMA1 Missense_Mutation p.S704L 0.56 tolerated(0.16) benign(0.038) TCGA-BF-AAP2-01 10 79781730 79781730 G A POLR3A Silent p.F312F 0.29 TCGA-BF-AAP2-01 10 81053310 81053310 C T ZMIZ1 Missense_Mutation p.P377L 0.41 probably_damaging(0.999) TCGA-BF-AAP2-01 10 81697974 81697974 G A SFTPD Silent p.F254F 0.31 TCGA-BF-AAP2-01 10 81701243 81701243 C T SFTPD Missense_Mutation p.G193E 0.64 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP2-01 10 81850772 81850772 T A TMEM254 3'UTR 0.39 TCGA-BF-AAP2-01 10 82269215 82269215 C T TSPAN14 Silent p.S146S 0.14 TCGA-BF-AAP2-01 10 82403771 82403771 G A SH2D4B Silent p.R336R 0.25 TCGA-BF-AAP2-01 10 89474533 89474533 A G PAPSS2 Silent p.K184K 0.47 TCGA-BF-AAP2-01 10 94679771 94679771 C T EXOC6 Silent p.S284S 0.17 TCGA-BF-AAP2-01 10 95372939 95372939 C T PDE6C Missense_Mutation p.H153Y 0.08 deleterious(0.03) benign(0.007) TCGA-BF-AAP2-01 10 95718512 95718512 C T PIPSL RNA 0.38 TCGA-BF-AAP2-01 10 95791765 95791765 G A PLCE1 Missense_Mutation p.R321Q 0.56 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP2-01 10 96022433 96022433 C T PLCE1 Missense_Mutation p.L1333F 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 10 96609693 96609693 C T CYP2C19 Missense_Mutation p.S390F 0.33 tolerated(0.4) possibly_damaging(0.86) TCGA-BF-AAP2-01 10 96748778 96748778 C T CYP2C9 Missense_Mutation p.P489L 0.17 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP2-01 10 97583037 97583037 C T ENTPD1 Silent p.I32I 0.17 TCGA-BF-AAP2-01 10 97951757 97951757 C T BLNK Missense_Mutation p.R448K 0.12 tolerated(0.92) benign(0.413) TCGA-BF-AAP2-01 10 98742855 98742855 C T C10orf12 Silent p.L570L 0.34 TCGA-BF-AAP2-01 11 100211289 100211289 G A CNTN5 Missense_Mutation p.G942E 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-BF-AAP2-01 11 101347253 101347253 G A TRPC6 Missense_Mutation p.A508V 0.13 deleterious(0.01) benign(0.185) TCGA-BF-AAP2-01 11 101776578 101776578 C T ANGPTL5 Missense_Mutation p.R81K 0.18 tolerated(0.33) benign(0.017) TCGA-BF-AAP2-01 11 102195358 102195358 C T BIRC3 Missense_Mutation p.P40S 0.34 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 11 102661152 102661152 C T MMP1 Silent p.R467R 0.07 TCGA-BF-AAP2-01 11 102713201 102713201 C T MMP3 Missense_Mutation p.E154K 0.35 tolerated(0.12) benign(0.1) TCGA-BF-AAP2-01 11 113857375 113857375 C T HTR3A Missense_Mutation p.L287F 0.79 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 11 114183226 114183226 C T NNMT 3'UTR 0.78 TCGA-BF-AAP2-01 11 114392930 114392930 G A NXPE1 Silent p.S326S 0.54 TCGA-BF-AAP2-01 11 117711004 117711004 C T FXYD6 Intron 0.79 TCGA-BF-AAP2-01 11 118765002 118765002 G A CXCR5 Missense_Mutation p.R250Q 0.21 tolerated(0.13) probably_damaging(0.985) TCGA-BF-AAP2-01 11 118765003 118765003 G A CXCR5 Silent p.R250R 0.21 TCGA-BF-AAP2-01 11 119217069 119217069 G A MFRP Missense_Mutation p.P24S 0.90 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 11 122830177 122830177 C T C11orf63 3'UTR 0.56 TCGA-BF-AAP2-01 11 123894034 123894034 C T OR10G9 Silent p.F105F 0.53 TCGA-BF-AAP2-01 11 123909394 123909394 G A OR10G7 Silent p.F105F 0.20 TCGA-BF-AAP2-01 11 124016588 124016588 C T VWA5A Missense_Mutation p.S766L 0.41 tolerated(0.13) benign(0) TCGA-BF-AAP2-01 11 124189782 124189782 G A OR8D2 Silent p.F104F 0.73 TCGA-BF-AAP2-01 11 124440534 124440534 C T OR8A1 Silent p.I190I 0.78 TCGA-BF-AAP2-01 11 124754804 124754804 G A ROBO4 Missense_Mutation p.P1003S 0.71 tolerated_low_confidence(0.51) possibly_damaging(0.641) TCGA-BF-AAP2-01 11 15262026 15262026 C A INSC Missense_Mutation p.P523Q 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-BF-AAP2-01 11 17483217 17483217 G A ABCC8 Silent p.I245I 0.29 TCGA-BF-AAP2-01 11 18042393 18042393 G A TPH1 3'UTR 0.40 TCGA-BF-AAP2-01 11 18730957 18730957 C T IGSF22 Missense_Mutation p.G992E 0.30 tolerated(0.14) probably_damaging(0.987) TCGA-BF-AAP2-01 11 18955361 18955361 C T MRGPRX1 3'UTR 0.29 TCGA-BF-AAP2-01 11 18956048 18956048 G A MRGPRX1 Missense_Mutation p.S95F 0.23 tolerated(0.71) benign(0.008) TCGA-BF-AAP2-01 11 20673985 20673985 C T SLC6A5 Missense_Mutation p.P741S 0.05 tolerated(0.09) benign(0.007) TCGA-BF-AAP2-01 11 30033763 30033763 C T KCNA4 Missense_Mutation p.D155N 0.22 deleterious(0.04) benign(0.395) TCGA-BF-AAP2-01 11 30921951 30921951 G A DCDC1 Silent p.I1532I 0.27 TCGA-BF-AAP2-01 11 319911 319911 G A IFITM3 Missense_Mutation p.A110V 0.22 deleterious(0.01) possibly_damaging(0.718) TCGA-BF-AAP2-01 11 32410513 32410513 C T WT1 3'UTR 0.58 TCGA-BF-AAP2-01 11 32414262 32414262 C T WT1 Missense_Mutation p.R430Q 0.32 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-BF-AAP2-01 11 32954808 32954808 C T QSER1 Silent p.S539S 0.17 TCGA-BF-AAP2-01 11 35461236 35461236 G A PAMR1 Nonsense_Mutation p.R364* 0.44 TCGA-BF-AAP2-01 11 36597685 36597685 C T RAG1 Missense_Mutation p.A944V 0.09 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-BF-AAP2-01 11 40137368 40137368 G A LRRC4C Missense_Mutation p.P159S 0.09 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 11 4407027 4407027 G A TRIM21 Missense_Mutation p.R306W 0.38 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP2-01 11 46341824 46341824 G A CREB3L1 Missense_Mutation p.R423Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 11 4661332 4661332 G A OR51D1 Silent p.E104E 0.35 TCGA-BF-AAP2-01 11 47283291 47283291 G A NR1H3 Intron 0.32 TCGA-BF-AAP2-01 11 47397241 47397241 G A SPI1 Nonsense_Mutation p.Q30* 0.37 TCGA-BF-AAP2-01 11 47463225 47463225 C T RAPSN Missense_Mutation p.G284R 0.53 deleterious(0.04) probably_damaging(0.969) TCGA-BF-AAP2-01 11 47463262 47463262 G A RAPSN Silent p.S271S 0.22 TCGA-BF-AAP2-01 11 4791042 4791042 A T OR51F1 Missense_Mutation p.F36I 0.26 tolerated(0.09) benign(0.007) TCGA-BF-AAP2-01 11 48146545 48146545 G A PTPRJ Silent p.R300R 0.47 TCGA-BF-AAP2-01 11 4929078 4929078 C T OR51A7 Missense_Mutation p.P160L 0.23 deleterious(0.02) possibly_damaging(0.521) TCGA-BF-AAP2-01 11 4936874 4936874 C T OR51G2 Missense_Mutation p.G7E 0.44 tolerated(0.82) unknown(0) TCGA-BF-AAP2-01 11 4976281 4976281 C T OR51A2 Silent p.L221L 0.16 TCGA-BF-AAP2-01 11 5010886 5010886 C T MMP26 Silent p.F36F 0.36 TCGA-BF-AAP2-01 11 5020878 5020878 G A OR51L1 Silent p.L222L 0.33 TCGA-BF-AAP2-01 11 5153524 5153524 G A OR52A5 Missense_Mutation p.L117F 0.16 tolerated(0.35) probably_damaging(1) TCGA-BF-AAP2-01 11 5153525 5153525 G A OR52A5 Silent p.I116I 0.16 TCGA-BF-AAP2-01 11 5153779 5153779 G A OR52A5 Missense_Mutation p.P32S 0.44 deleterious(0.01) benign(0.373) TCGA-BF-AAP2-01 11 5221558 5221558 G A OR51V1 Missense_Mutation p.L125F 0.42 deleterious(0.03) possibly_damaging(0.791) TCGA-BF-AAP2-01 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.16 deleterious(0.04) probably_damaging(0.987) TCGA-BF-AAP2-01 11 5411137 5411137 C T OR51M1 Missense_Mutation p.P170L 0.39 deleterious(0) probably_damaging(0.96) TCGA-BF-AAP2-01 11 5443523 5443523 C T OR51Q1 Silent p.I31I 0.46 TCGA-BF-AAP2-01 11 5462416 5462416 G A OR51I1 Missense_Mutation p.S110F 0.17 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 11 5530442 5530442 G A UBQLN3 Missense_Mutation p.S116L 0.39 deleterious(0.04) benign(0.004) TCGA-BF-AAP2-01 11 55322235 55322235 G A OR4C15 Missense_Mutation p.M151I 0.46 tolerated_low_confidence(0.07) benign(0.292) TCGA-BF-AAP2-01 11 5536348 5536348 G A UBQLNL Nonsense_Mutation p.Q442* 0.35 TCGA-BF-AAP2-01 11 55371274 55371274 C T OR4C11 Missense_Mutation p.M192I 0.22 tolerated(0.26) benign(0.002) TCGA-BF-AAP2-01 11 55563067 55563067 C T OR5D14 Silent p.P12P 0.41 TCGA-BF-AAP2-01 11 55873319 55873319 C T OR8H2 Silent p.S267S 0.40 TCGA-BF-AAP2-01 11 55904891 55904891 C T OR8J3 Missense_Mutation p.G102R 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-BF-AAP2-01 11 56184913 56184913 G A OR5R1 Missense_Mutation p.H266Y 0.24 tolerated(0.07) possibly_damaging(0.901) TCGA-BF-AAP2-01 11 57004401 57004401 G A APLNR Silent p.S26S 0.33 TCGA-BF-AAP2-01 11 5799638 5799638 G A OR52N5 Missense_Mutation p.S76F 0.46 deleterious(0) probably_damaging(0.977) TCGA-BF-AAP2-01 11 58207358 58207358 G A OR5B12 Silent p.F89F 0.28 TCGA-BF-AAP2-01 11 6008043 6008043 C T OR52L1 Missense_Mutation p.E40K 0.40 tolerated(0.76) benign(0.08) TCGA-BF-AAP2-01 11 61250209 61250209 C T PPP1R32 Missense_Mutation p.P104S 0.52 tolerated(0.07) possibly_damaging(0.586) TCGA-BF-AAP2-01 11 61290579 61290579 C T SYT7 Missense_Mutation p.D434N 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 11 6129155 6129155 C T OR56B4 Silent p.L49L 0.10 TCGA-BF-AAP2-01 11 62298301 62298301 G A AHNAK Silent p.S1196S 0.37 TCGA-BF-AAP2-01 11 62300114 62300114 G A AHNAK Missense_Mutation p.P592L 0.26 probably_damaging(0.994) TCGA-BF-AAP2-01 11 62301485 62301485 G A AHNAK Missense_Mutation p.S135L 0.42 possibly_damaging(0.662) TCGA-BF-AAP2-01 11 62762142 62762142 C T SLC22A8 Missense_Mutation p.G363D 0.10 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 11 62910975 62910975 G A SLC22A24 Missense_Mutation p.H93Y 0.52 deleterious(0.02) benign(0.006) TCGA-BF-AAP2-01 11 62910976 62910976 G A SLC22A24 Silent p.I92I 0.52 TCGA-BF-AAP2-01 11 63398581 63398581 G A ATL3 Silent p.I490I 0.47 TCGA-BF-AAP2-01 11 64024005 64024005 C T PLCB3 Silent p.L286L 0.43 TCGA-BF-AAP2-01 11 64071278 64071278 G A TEX40 Missense_Mutation p.E156K 0.31 deleterious(0) benign(0.047) TCGA-BF-AAP2-01 11 64111938 64111938 G A CCDC88B Missense_Mutation p.R642K 0.38 tolerated_low_confidence(0.28) benign(0.004) TCGA-BF-AAP2-01 11 64132832 64132832 C T RPS6KA4 Silent p.I322I 0.42 TCGA-BF-AAP2-01 11 64707228 64707228 C T C11orf85 Silent p.G186G 0.43 TCGA-BF-AAP2-01 11 64854536 64854536 C T ZFPL1 Silent p.P206P 0.46 TCGA-BF-AAP2-01 11 65088695 65088695 C T CDC42EP2 Missense_Mutation p.S109F 0.36 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 11 65349553 65349553 C T EHBP1L1 Silent p.T470T 0.43 TCGA-BF-AAP2-01 11 65403732 65403732 C T PCNXL3 Silent p.L1849L 0.45 TCGA-BF-AAP2-01 11 65734835 65734835 G A SART1 Missense_Mutation p.D432N 0.32 tolerated(0.31) benign(0.001) TCGA-BF-AAP2-01 11 65828121 65828121 C T SF3B2 Silent p.I566I 0.48 TCGA-BF-AAP2-01 11 68201282 68201282 C T LRP5 Missense_Mutation p.R1326C 0.31 deleterious(0.03) possibly_damaging(0.773) TCGA-BF-AAP2-01 11 6913591 6913591 G A OR2D2 Silent p.S47S 0.39 TCGA-BF-AAP2-01 11 71907246 71907246 G A FOLR1 3'UTR 0.43 TCGA-BF-AAP2-01 11 71952208 71952208 G A PHOX2A Missense_Mutation p.P115S 0.43 deleterious(0) probably_damaging(0.96) TCGA-BF-AAP2-01 11 73718001 73718001 G A UCP3 Silent p.L29L 0.40 TCGA-BF-AAP2-01 11 7817623 7817623 C T OR5P2 Silent p.R289R 0.48 TCGA-BF-AAP2-01 11 78399252 78399252 G A TENM4 Silent p.L1703L 0.42 TCGA-BF-AAP2-01 11 7949808 7949808 C T OR10A6 Missense_Mutation p.M134I 0.14 tolerated(0.23) benign(0) TCGA-BF-AAP2-01 11 89531371 89531371 G A TRIM49 Missense_Mutation p.S429F 0.37 deleterious(0.02) probably_damaging(0.972) TCGA-BF-AAP2-01 11 92085542 92085542 G A FAT3 Silent p.E88E 0.18 TCGA-BF-AAP2-01 11 93129466 93129466 G A CCDC67 Missense_Mutation p.G434E 0.24 tolerated(1) probably_damaging(0.991) TCGA-BF-AAP2-01 11 93822051 93822051 C T HEPHL1 Silent p.I737I 0.17 TCGA-BF-AAP2-01 11 93826702 93826702 G A HEPHL1 Nonsense_Mutation p.W777* 0.19 TCGA-BF-AAP2-01 11 93837758 93837758 G A HEPHL1 Missense_Mutation p.G916E 0.05 tolerated(0.34) probably_damaging(0.973) TCGA-BF-AAP2-01 11 94730975 94730975 G A KDM4D Missense_Mutation p.E147K 0.10 tolerated(0.21) benign(0.034) TCGA-BF-AAP2-01 12 101493479 101493479 C T ANO4 Silent p.F675F 0.17 TCGA-BF-AAP2-01 12 10321719 10321719 G A OLR1 Silent p.V44V 0.33 TCGA-BF-AAP2-01 12 104064513 104064513 G A STAB2 Missense_Mutation p.E767K 0.21 tolerated(0.81) benign(0) TCGA-BF-AAP2-01 12 104131411 104131411 G A STAB2 Splice_Site p.X1851_splice 0.34 TCGA-BF-AAP2-01 12 106995119 106995119 C T RFX4 Missense_Mutation p.S22F 0.31 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BF-AAP2-01 12 106995120 106995120 C T RFX4 Silent p.S22S 0.31 TCGA-BF-AAP2-01 12 108012035 108012035 G A BTBD11 Missense_Mutation p.A778T 0.30 tolerated(0.31) benign(0.012) TCGA-BF-AAP2-01 12 108589711 108589711 C T WSCD2 Silent p.F34F 0.13 TCGA-BF-AAP2-01 12 109046152 109046152 G A CORO1C Silent p.S299S 0.08 TCGA-BF-AAP2-01 12 109283273 109283273 G A DAO Missense_Mutation p.G113E 0.11 deleterious(0.03) probably_damaging(0.953) TCGA-BF-AAP2-01 12 111472027 111472027 G A CUX2 Missense_Mutation p.D16N 0.43 tolerated(0.13) benign(0.382) TCGA-BF-AAP2-01 12 112681515 112681515 G A HECTD4 Missense_Mutation p.S1421L 0.45 benign(0.306) TCGA-BF-AAP2-01 12 112924348 112924348 C T PTPN11 Missense_Mutation p.P432S 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-BF-AAP2-01 12 113379461 113379461 G A OAS3 Silent p.V88V 0.40 TCGA-BF-AAP2-01 12 113624495 113624495 C T RITA1 5'UTR 0.36 TCGA-BF-AAP2-01 12 11461597 11461597 C T PRB4 Missense_Mutation p.G107E 0.37 deleterious_low_confidence(0) unknown(0) TCGA-BF-AAP2-01 12 114793352 114793352 C T TBX5 Nonsense_Mutation p.W514* 0.48 TCGA-BF-AAP2-01 12 114793775 114793775 T C TBX5 Silent p.A373A 0.22 TCGA-BF-AAP2-01 12 11545848 11545848 G A PRB2 Silent p.P388P 0.20 TCGA-BF-AAP2-01 12 116403927 116403927 G A MED13L Missense_Mutation p.S2116L 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-BF-AAP2-01 12 116972774 116972774 C T LINC00173 RNA 0.56 TCGA-BF-AAP2-01 12 117725904 117725904 C T NOS1 Missense_Mutation p.D368N 0.57 tolerated(0.75) benign(0.326) TCGA-BF-AAP2-01 12 118293376 118293376 G A KSR2 Missense_Mutation p.S110F 0.35 deleterious(0.04) benign(0.089) TCGA-BF-AAP2-01 12 118293377 118293377 A C KSR2 Missense_Mutation p.S110A 0.34 tolerated(0.87) benign(0) TCGA-BF-AAP2-01 12 118480748 118480748 G A WSB2 Nonsense_Mutation p.Q153* 0.35 TCGA-BF-AAP2-01 12 118639133 118639133 C T TAOK3 Missense_Mutation p.G319R 0.42 tolerated(0.09) possibly_damaging(0.728) TCGA-BF-AAP2-01 12 124297801 124297801 G A DNAH10 Missense_Mutation p.D961N 0.19 probably_damaging(0.992) TCGA-BF-AAP2-01 12 12630780 12630780 C T DUSP16 Missense_Mutation p.G329S 0.41 tolerated(0.19) benign(0.002) TCGA-BF-AAP2-01 12 13061179 13061179 C T GPRC5A Intron 0.30 TCGA-BF-AAP2-01 12 130897192 130897192 G A RIMBP2 Silent p.L931L 0.27 TCGA-BF-AAP2-01 12 130927117 130927117 C T RIMBP2 Silent p.L243L 0.47 TCGA-BF-AAP2-01 12 132322755 132322755 T C MMP17 Missense_Mutation p.F59L 0.33 deleterious(0) probably_damaging(0.963) TCGA-BF-AAP2-01 12 132624221 132624221 G A DDX51 Missense_Mutation p.R645W 0.58 deleterious(0) possibly_damaging(0.881) TCGA-BF-AAP2-01 12 132636095 132636095 C T NOC4L Silent p.P380P 0.69 TCGA-BF-AAP2-01 12 132636096 132636096 C T NOC4L Missense_Mutation p.P381S 0.73 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAP2-01 12 132636165 132636165 C T NOC4L Missense_Mutation p.L404F 0.47 deleterious(0) probably_damaging(0.986) TCGA-BF-AAP2-01 12 13828755 13828755 G A GRIN2B Missense_Mutation p.S350F 0.39 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 12 14832638 14832638 G A GUCY2C Silent p.D261D 0.46 TCGA-BF-AAP2-01 12 16109948 16109948 C T DERA Missense_Mutation p.T37I 0.24 tolerated(0.08) benign(0.001) TCGA-BF-AAP2-01 12 16109949 16109949 C T DERA Silent p.T37T 0.24 TCGA-BF-AAP2-01 12 18238593 18238593 C T RERGL Silent p.R49R 0.36 TCGA-BF-AAP2-01 12 18716344 18716344 G A PIK3C2G Missense_Mutation p.E1231K 0.26 tolerated(0.13) benign(0.008) TCGA-BF-AAP2-01 12 18854670 18854670 C T PLCZ1 Missense_Mutation p.G302E 0.23 tolerated(0.08) probably_damaging(0.988) TCGA-BF-AAP2-01 12 1904914 1904914 T C CACNA2D4 Missense_Mutation p.N1049S 0.41 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP2-01 12 21699358 21699358 G A GYS2 Missense_Mutation p.P490L 0.19 deleterious(0.03) possibly_damaging(0.688) TCGA-BF-AAP2-01 12 24736822 24736822 A T LINC00477 RNA 0.36 TCGA-BF-AAP2-01 12 2705082 2705082 C T CACNA1C Silent p.F902F 0.20 TCGA-BF-AAP2-01 12 278223 278223 C A IQSEC3 Missense_Mutation p.P1006T 0.33 tolerated(1) benign(0.027) TCGA-BF-AAP2-01 12 29649576 29649576 C T OVCH1 Missense_Mutation p.M32I 0.36 tolerated(0.1) benign(0.003) TCGA-BF-AAP2-01 12 31254895 31254895 C T DDX11 Silent p.G727G 0.32 TCGA-BF-AAP2-01 12 31945104 31945104 C T H3F3C 5'UTR 0.33 TCGA-BF-AAP2-01 12 33031904 33031904 C T PKP2 Missense_Mutation p.D96N 0.33 deleterious(0.04) benign(0.111) TCGA-BF-AAP2-01 12 3806093 3806093 C T EFCAB4B Missense_Mutation p.G25R 0.39 tolerated_low_confidence(0.22) benign(0.06) TCGA-BF-AAP2-01 12 40010918 40010918 T A ABCD2 Missense_Mutation p.N331I 0.08 deleterious(0.01) possibly_damaging(0.781) TCGA-BF-AAP2-01 12 41330675 41330675 C T CNTN1 Missense_Mutation p.P360S 0.41 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 12 4554726 4554726 C T FGF6 Missense_Mutation p.G4E 0.52 tolerated_low_confidence(0.06) benign(0.007) TCGA-BF-AAP2-01 12 46243941 46243941 C T ARID2 Nonsense_Mutation p.Q679* 0.41 TCGA-BF-AAP2-01 12 47629049 47629049 G A PCED1B Missense_Mutation p.G68D 0.38 tolerated(0.27) benign(0.167) TCGA-BF-AAP2-01 12 48174189 48174189 G A SLC48A1 3'UTR 0.38 TCGA-BF-AAP2-01 12 49162354 49162354 G A ADCY6 3'UTR 0.32 TCGA-BF-AAP2-01 12 5021851 5021851 C T KCNA1 Missense_Mutation p.A436V 0.09 tolerated_low_confidence(0.3) benign(0.098) TCGA-BF-AAP2-01 12 50501537 50501537 G A GPD1 Missense_Mutation p.G267E 0.31 deleterious(0) probably_damaging(0.97) TCGA-BF-AAP2-01 12 51736400 51736400 G A CELA1 Silent p.I95I 0.33 TCGA-BF-AAP2-01 12 52100399 52100399 C T SCN8A Missense_Mutation p.P512L 0.36 tolerated(0.22) benign(0.01) TCGA-BF-AAP2-01 12 52314566 52314566 G A ACVRL1 Missense_Mutation p.M467I 0.15 tolerated(0.65) benign(0.007) TCGA-BF-AAP2-01 12 52777579 52777579 G A KRT84 Missense_Mutation p.R184W 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-BF-AAP2-01 12 52984653 52984653 C T KRT72 Silent p.R352R 0.39 TCGA-BF-AAP2-01 12 53038983 53038983 C T KRT2 Silent p.K580K 0.39 TCGA-BF-AAP2-01 12 53071967 53071967 C T KRT1 Missense_Mutation p.E283K 0.35 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 12 53202201 53202201 G A KRT4 Silent p.V334V 0.23 TCGA-BF-AAP2-01 12 53215783 53215783 C T KRT79 Missense_Mutation p.G494E 0.10 tolerated(0.1) benign(0.274) TCGA-BF-AAP2-01 12 54798975 54798975 C T ITGA5 Silent p.G400G 0.08 TCGA-BF-AAP2-01 12 54905830 54905830 C T NCKAP1L Silent p.I294I 0.08 TCGA-BF-AAP2-01 12 55714500 55714500 G A OR6C1 Silent p.G39G 0.11 TCGA-BF-AAP2-01 12 55795014 55795014 G A OR6C65 Silent p.K234K 0.42 TCGA-BF-AAP2-01 12 56088101 56088101 C T ITGA7 Missense_Mutation p.E795K 0.43 tolerated(0.38) benign(0.06) TCGA-BF-AAP2-01 12 56092282 56092282 C T ITGA7 Silent p.L363L 0.36 TCGA-BF-AAP2-01 12 56365477 56365477 C T CDK2 3'UTR 0.31 TCGA-BF-AAP2-01 12 56718822 56718822 G A PAN2 Missense_Mutation p.P524S 0.20 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 12 57111121 57111121 G A NACA Intron 0.73 TCGA-BF-AAP2-01 12 57112281 57112281 G A NACA Intron 0.52 TCGA-BF-AAP2-01 12 57114830 57114830 G A NACA Missense_Mutation p.P162S 0.09 tolerated_low_confidence(0.1) possibly_damaging(0.803) TCGA-BF-AAP2-01 12 57574533 57574533 C T LRP1 Missense_Mutation p.R1824W 0.20 probably_damaging(0.999) TCGA-BF-AAP2-01 12 5963220 5963220 G A ANO2 Missense_Mutation p.P204S 0.36 deleterious(0.02) possibly_damaging(0.791) TCGA-BF-AAP2-01 12 68052132 68052132 C T DYRK2 Missense_Mutation p.S482F 0.31 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 12 6861202 6861202 G A MLF2 Silent p.H23H 0.19 TCGA-BF-AAP2-01 12 70004463 70004463 C T LRRC10 Silent p.R52R 0.55 TCGA-BF-AAP2-01 12 7060888 7060888 C T PTPN6 Missense_Mutation p.S42F 0.13 deleterious(0) probably_damaging(0.968) TCGA-BF-AAP2-01 12 70970294 70970294 G A PTPRB Nonsense_Mutation p.Q904* 0.45 TCGA-BF-AAP2-01 12 7288818 7288818 C T CLSTN3 Silent p.I253I 0.37 TCGA-BF-AAP2-01 12 7343088 7343088 C T PEX5 Missense_Mutation p.P39S 0.38 tolerated(0.64) benign(0.011) TCGA-BF-AAP2-01 12 7522043 7522043 C T CD163L1 Missense_Mutation p.G1317R 0.38 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 12 7637854 7637854 C T CD163 Missense_Mutation p.G873R 0.51 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 12 78444626 78444626 C T NAV3 Missense_Mutation p.P739S 0.27 tolerated(0.06) possibly_damaging(0.686) TCGA-BF-AAP2-01 12 7982554 7982554 G A SLC2A14 Silent p.C130C 0.43 TCGA-BF-AAP2-01 12 85450771 85450771 C T LRRIQ1 Missense_Mutation p.L734F 0.37 deleterious(0.04) probably_damaging(0.937) TCGA-BF-AAP2-01 12 86199613 86199613 C T RASSF9 Missense_Mutation p.E59K 0.38 deleterious(0.01) possibly_damaging(0.691) TCGA-BF-AAP2-01 12 88589440 88589440 C T TMTC3 3'UTR 0.45 TCGA-BF-AAP2-01 12 91501976 91501976 G A LUM Silent p.L261L 0.47 TCGA-BF-AAP2-01 12 9220433 9220433 G A A2M Missense_Mutation p.L1471F 0.37 tolerated(0.7) benign(0) TCGA-BF-AAP2-01 12 9303317 9303317 G A PZP Missense_Mutation p.S1436F 0.42 deleterious(0.05) probably_damaging(0.996) TCGA-BF-AAP2-01 12 97045453 97045453 C T C12orf55 Missense_Mutation p.L1654F 0.45 tolerated(0.57) possibly_damaging(0.548) TCGA-BF-AAP2-01 12 97137531 97137531 G A C12orf55 Missense_Mutation p.G2467E 0.42 tolerated(1) benign(0.002) TCGA-BF-AAP2-01 12 98992384 98992384 A G SLC25A3 Missense_Mutation p.M183V 0.56 deleterious(0.01) possibly_damaging(0.643) TCGA-BF-AAP2-01 13 100617672 100617672 C T ZIC5 Missense_Mutation p.E651K 0.32 deleterious(0.01) possibly_damaging(0.696) TCGA-BF-AAP2-01 13 103527964 103527964 C T ERCC5 Missense_Mutation p.T1091I 0.10 tolerated(0.5) benign(0.003) TCGA-BF-AAP2-01 13 103698460 103698460 C T SLC10A2 3'UTR 0.47 TCGA-BF-AAP2-01 13 103718593 103718593 C T SLC10A2 Missense_Mutation p.D3N 0.42 tolerated_low_confidence(1) benign(0) TCGA-BF-AAP2-01 13 107148100 107148100 T C EFNB2 Silent p.G165G 0.42 TCGA-BF-AAP2-01 13 108518415 108518415 G A FAM155A Missense_Mutation p.S177F 0.07 deleterious(0) possibly_damaging(0.714) TCGA-BF-AAP2-01 13 109438085 109438085 G A MYO16 Missense_Mutation p.E182K 0.38 deleterious(0) possibly_damaging(0.85) TCGA-BF-AAP2-01 13 111084672 111084672 G A COL4A2 Missense_Mutation p.G217R 0.16 probably_damaging(1) TCGA-BF-AAP2-01 13 113728802 113728802 C T MCF2L Silent p.F347F 0.27 TCGA-BF-AAP2-01 13 114325836 114325836 G A GRK1 Missense_Mutation p.E284K 0.34 tolerated(0.18) possibly_damaging(0.604) TCGA-BF-AAP2-01 13 23910743 23910743 G A SACS Silent p.C2424C 0.46 TCGA-BF-AAP2-01 13 25478098 25478098 G A CENPJ Missense_Mutation p.R931C 0.38 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 13 26620815 26620815 A G SHISA2 Missense_Mutation p.Y242H 0.41 deleterious(0) possibly_damaging(0.851) TCGA-BF-AAP2-01 13 26975428 26975428 C T CDK8 Missense_Mutation p.P352S 0.34 tolerated(0.06) benign(0.155) TCGA-BF-AAP2-01 13 33091879 33091879 A G N4BP2L2 Intron 0.52 TCGA-BF-AAP2-01 13 37619423 37619423 C A SUPT20H Nonsense_Mutation p.E85* 0.37 TCGA-BF-AAP2-01 13 39586844 39586844 G A PROSER1 Missense_Mutation p.L849F 0.41 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 13 41134469 41134469 A T FOXO1 Missense_Mutation p.L387I 0.45 tolerated(0.42) benign(0.192) TCGA-BF-AAP2-01 13 42876573 42876573 C T AKAP11 Missense_Mutation p.P1231S 0.43 tolerated(0.46) benign(0.02) TCGA-BF-AAP2-01 13 47011718 47011718 T A PPP1R2P4 RNA 0.54 TCGA-BF-AAP2-01 13 47466648 47466648 T C HTR2A Missense_Mutation p.M164V 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-BF-AAP2-01 13 49885003 49885003 C T CAB39L Missense_Mutation p.E321K 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 13 51826213 51826213 C T FAM124A Missense_Mutation p.S273F 0.26 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 13 52523827 52523827 C T ATP7B Missense_Mutation p.D946N 0.40 tolerated(0.93) benign(0.015) TCGA-BF-AAP2-01 13 52539161 52539161 C T ATP7B Silent p.G572G 0.39 TCGA-BF-AAP2-01 13 86370272 86370272 T G SLITRK6 Missense_Mutation p.L124F 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP2-01 13 99482008 99482008 G A DOCK9 Silent p.V1523V 0.44 TCGA-BF-AAP2-01 14 102508011 102508011 G A DYNC1H1 Silent p.G4014G 0.78 TCGA-BF-AAP2-01 14 103566856 103566856 C T EXOC3L4 Silent p.S100S 1.00 TCGA-BF-AAP2-01 14 105614753 105614753 G A JAG2 Missense_Mutation p.P682S 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 14 106236305 106236305 C T IGHG3 Missense_Mutation p.G167E 0.74 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP2-01 14 106552461 106552461 G A IGHV3-9 Missense_Mutation p.P60S 0.83 deleterious_low_confidence(0.03) possibly_damaging(0.669) TCGA-BF-AAP2-01 14 20295759 20295759 C T OR4N2 Missense_Mutation p.S51L 0.24 tolerated(0.53) benign(0.003) TCGA-BF-AAP2-01 14 20586549 20586549 C T OR4K17 Silent p.S328S 0.12 TCGA-BF-AAP2-01 14 20666403 20666403 G A OR11G2 Silent p.K303K 0.10 TCGA-BF-AAP2-01 14 20711511 20711511 C T OR11H4 Silent p.F187F 0.26 TCGA-BF-AAP2-01 14 20864820 20864820 G A TEP1 Missense_Mutation p.S540F 0.22 deleterious(0.01) benign(0.226) TCGA-BF-AAP2-01 14 20943378 20943378 C T PNP Missense_Mutation p.R207C 0.33 deleterious(0.02) benign(0.062) TCGA-BF-AAP2-01 14 21052207 21052207 G A RNASE11 Missense_Mutation p.P143S 0.42 tolerated(0.46) benign(0.012) TCGA-BF-AAP2-01 14 21052398 21052398 C T RNASE11 Missense_Mutation p.R79K 0.39 tolerated(0.14) possibly_damaging(0.88) TCGA-BF-AAP2-01 14 21216272 21216272 C T EDDM3A 3'UTR 0.47 TCGA-BF-AAP2-01 14 21511565 21511565 G A RNASE7 Silent p.Q138Q 0.33 TCGA-BF-AAP2-01 14 21796695 21796695 C T RPGRIP1 Missense_Mutation p.S1003L 0.40 tolerated(0.07) benign(0.091) TCGA-BF-AAP2-01 14 21991517 21991517 G A SALL2 Missense_Mutation p.S782F 0.34 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 14 22205169 22205169 C T TRAV4 Missense_Mutation p.S78F 0.43 tolerated(0.06) possibly_damaging(0.646) TCGA-BF-AAP2-01 14 22447069 22447069 G A TRAV8-6 Missense_Mutation p.G17E 0.09 tolerated(0.19) benign(0.132) TCGA-BF-AAP2-01 14 22539430 22539430 C T TRAV22 Missense_Mutation p.S97F 0.33 deleterious(0.01) possibly_damaging(0.635) TCGA-BF-AAP2-01 14 22690332 22690332 C T TRAV35 Silent p.S97S 0.50 TCGA-BF-AAP2-01 14 23871750 23871750 C T MYH6 Missense_Mutation p.G355E 0.42 deleterious(0) possibly_damaging(0.465) TCGA-BF-AAP2-01 14 23900984 23900984 G A MYH7 Nonsense_Mutation p.Q209* 0.43 TCGA-BF-AAP2-01 14 24601823 24601823 C T FITM1 Silent p.L224L 0.22 TCGA-BF-AAP2-01 14 24884281 24884281 C T NYNRIN Missense_Mutation p.P1109L 0.15 deleterious(0.03) benign(0.037) TCGA-BF-AAP2-01 14 24885308 24885308 G A NYNRIN Silent p.G1451G 0.56 TCGA-BF-AAP2-01 14 24911973 24911973 C T SDR39U1 Translation_Start_Site p.M1? 0.40 deleterious(0.01) probably_damaging(0.975) TCGA-BF-AAP2-01 14 25101576 25101576 G A GZMB Missense_Mutation p.P98L 0.45 deleterious(0.01) possibly_damaging(0.88) TCGA-BF-AAP2-01 14 31067757 31067757 T C G2E3 Missense_Mutation p.V235A 0.26 tolerated(0.74) benign(0.009) TCGA-BF-AAP2-01 14 33293304 33293304 G T AKAP6 Missense_Mutation p.L2095F 0.73 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 14 39721990 39721990 G A MIA2 Missense_Mutation p.E536K 0.36 tolerated(0.08) benign(0.039) TCGA-BF-AAP2-01 14 55650346 55650346 G A DLGAP5 Missense_Mutation p.R122C 0.61 deleterious(0) possibly_damaging(0.696) TCGA-BF-AAP2-01 14 57268551 57268551 C T OTX2 Missense_Mutation p.D266N 0.42 deleterious(0) probably_damaging(0.947) TCGA-BF-AAP2-01 14 57268715 57268715 G A OTX2 Missense_Mutation p.S211L 0.79 deleterious(0.01) possibly_damaging(0.686) TCGA-BF-AAP2-01 14 58955550 58955550 G A KIAA0586 Missense_Mutation p.G1300R 0.62 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 14 59939675 59939675 G A L3HYPDH 3'UTR 0.71 TCGA-BF-AAP2-01 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.82 TCGA-BF-AAP2-01 14 69861592 69861592 G A ERH Missense_Mutation p.P14L 0.81 tolerated(0.13) benign(0.063) TCGA-BF-AAP2-01 14 70513102 70513102 C T SLC8A3 Intron 0.82 TCGA-BF-AAP2-01 14 70855193 70855193 G A SYNJ2BP Silent p.I65I 0.85 TCGA-BF-AAP2-01 14 71197002 71197002 G A MAP3K9 3'UTR 0.75 TCGA-BF-AAP2-01 14 75130491 75130491 A C AREL1 Missense_Mutation p.Y802D 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-BF-AAP2-01 14 75563919 75563919 G A NEK9 Missense_Mutation p.P686L 0.77 tolerated(0.09) benign(0.019) TCGA-BF-AAP2-01 14 88411954 88411954 G A GALC Missense_Mutation p.P538L 0.68 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 14 88431864 88431864 G A GALC Missense_Mutation p.P340S 0.78 deleterious(0.04) possibly_damaging(0.899) TCGA-BF-AAP2-01 14 91780267 91780267 C T CCDC88C Silent p.E631E 0.89 TCGA-BF-AAP2-01 14 93954099 93954099 C T UNC79 Missense_Mutation p.P60L 0.58 deleterious(0.03) benign(0.007) TCGA-BF-AAP2-01 14 94088352 94088352 G A UNC79 Silent p.V1414V 0.72 TCGA-BF-AAP2-01 14 95557639 95557639 C T DICER1 Missense_Mutation p.D1810N 0.70 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 14 96152901 96152901 G A TCL1B Missense_Mutation p.V33M 0.67 tolerated(0.06) benign(0.149) TCGA-BF-AAP2-01 15 100269606 100269606 G A LYSMD4 Missense_Mutation p.P206S 0.06 tolerated(0.73) benign(0.164) TCGA-BF-AAP2-01 15 100801805 100801805 G A ADAMTS17 Silent p.L304L 0.53 TCGA-BF-AAP2-01 15 102292712 102292712 C T DNM1P47 RNA 0.53 TCGA-BF-AAP2-01 15 24922105 24922105 G A NPAP1 Missense_Mutation p.G364E 0.90 tolerated(0.82) benign(0.198) TCGA-BF-AAP2-01 15 25417691 25417691 C T SNORD115-3 5'Flank 0.82 TCGA-BF-AAP2-01 15 35044744 35044744 C T GJD2 Missense_Mutation p.D301N 0.70 tolerated(0.17) possibly_damaging(0.848) TCGA-BF-AAP2-01 15 35275421 35275421 C T ZNF770 Missense_Mutation p.R72K 0.49 deleterious(0.04) probably_damaging(0.986) TCGA-BF-AAP2-01 15 40557004 40557004 G A PAK6 Silent p.K6K 0.31 TCGA-BF-AAP2-01 15 40568393 40568393 C T PAK6 3'UTR 0.42 TCGA-BF-AAP2-01 15 40661877 40661877 G A DISP2 Silent p.R1188R 0.38 TCGA-BF-AAP2-01 15 41862500 41862500 C T TYRO3 Missense_Mutation p.S482F 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP2-01 15 42147442 42147442 G A SPTBN5 Nonsense_Mutation p.Q3135* 0.35 TCGA-BF-AAP2-01 15 42749370 42749370 G A ZNF106 Missense_Mutation p.P12S 0.29 tolerated_low_confidence(0.14) benign(0.043) TCGA-BF-AAP2-01 15 43892791 43892791 C T STRC Missense_Mutation p.G1645E 0.53 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP2-01 15 45398503 45398503 C T DUOX2 Silent p.K656K 0.46 TCGA-BF-AAP2-01 15 49176459 49176459 G A SHC4 Missense_Mutation p.L276F 0.39 tolerated(0.06) benign(0.424) TCGA-BF-AAP2-01 15 50152477 50152477 T A ATP8B4 Missense_Mutation p.N1165Y 0.52 deleterious(0.01) probably_damaging(0.962) TCGA-BF-AAP2-01 15 51503052 51503052 C T CYP19A1 Missense_Mutation p.E489K 0.27 tolerated(0.64) benign(0.002) TCGA-BF-AAP2-01 15 55838919 55838919 G A PYGO1 Missense_Mutation p.P188S 0.27 tolerated(0.45) benign(0.02) TCGA-BF-AAP2-01 15 65157230 65157230 C T PLEKHO2 Missense_Mutation p.P206S 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP2-01 15 65622087 65622087 G A IGDCC3 Silent p.F658F 0.78 TCGA-BF-AAP2-01 15 65685757 65685757 G A IGDCC4 Silent p.F609F 0.70 TCGA-BF-AAP2-01 15 68466162 68466163 - A PIAS1 Frame_Shift_Ins p.P370Tfs*9 0.18 TCGA-BF-AAP2-01 15 72037445 72037445 G A THSD4 Missense_Mutation p.G636E 0.18 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 15 72691093 72691093 G A TMEM202 Missense_Mutation p.G61S 0.49 tolerated(0.09) benign(0.22) TCGA-BF-AAP2-01 15 74743193 74743193 G A UBL7 Silent p.L160L 0.36 TCGA-BF-AAP2-01 15 76866545 76866545 G A SCAPER Missense_Mutation p.A931V 0.55 deleterious(0) benign(0.015) TCGA-BF-AAP2-01 15 79063517 79063517 G A ADAMTS7 Silent p.V835V 0.31 TCGA-BF-AAP2-01 15 79339343 79339343 T C RASGRF1 Splice_Site p.X209_splice 0.43 TCGA-BF-AAP2-01 15 81172125 81172125 G A KIAA1199 Missense_Mutation p.G104R 0.41 deleterious(0.02) probably_damaging(0.96) TCGA-BF-AAP2-01 15 81172126 81172126 G A KIAA1199 Missense_Mutation p.G104E 0.40 tolerated(0.05) possibly_damaging(0.902) TCGA-BF-AAP2-01 15 81650806 81650806 C T TMC3 Silent p.R179R 0.24 TCGA-BF-AAP2-01 15 82523257 82523257 G A EFTUD1 Missense_Mutation p.L263F 0.21 deleterious(0) possibly_damaging(0.539) TCGA-BF-AAP2-01 15 83296033 83296033 C T CPEB1 Missense_Mutation p.R34Q 0.35 tolerated_low_confidence(0.08) possibly_damaging(0.732) TCGA-BF-AAP2-01 15 84287069 84287069 C T SH3GL3 3'UTR 0.55 TCGA-BF-AAP2-01 15 85383440 85383440 G A ALPK3 Silent p.E512E 0.32 TCGA-BF-AAP2-01 15 86807765 86807765 G A AGBL1 Missense_Mutation p.E409K 0.40 tolerated(0.26) benign(0.003) TCGA-BF-AAP2-01 15 89010480 89010480 G A MRPL46 Silent p.S43S 0.26 TCGA-BF-AAP2-01 15 89744837 89744837 C T ABHD2 3'UTR 0.21 TCGA-BF-AAP2-01 15 90764695 90764695 C T SEMA4B Missense_Mutation p.S231F 0.50 tolerated(1) probably_damaging(0.996) TCGA-BF-AAP2-01 15 91019989 91019989 C T IQGAP1 Missense_Mutation p.A960V 0.40 deleterious(0.01) benign(0.15) TCGA-BF-AAP2-01 15 91519953 91519953 G A PRC1 Silent p.L386L 0.36 TCGA-BF-AAP2-01 15 93007651 93007651 C T ST8SIA2 3'UTR 0.90 TCGA-BF-AAP2-01 15 93588738 93588738 G A RGMA Silent p.I289I 0.26 TCGA-BF-AAP2-01 15 95022212 95022212 G A MCTP2 Silent p.L862L 0.33 TCGA-BF-AAP2-01 15 99460079 99460079 C T IGF1R Silent p.F725F 0.31 TCGA-BF-AAP2-01 16 11260374 11260374 C T CLEC16A Missense_Mutation p.S924L 0.37 tolerated(0.15) benign(0.003) TCGA-BF-AAP2-01 16 1395092 1395092 C T BAIAP3 Silent p.I679I 0.44 TCGA-BF-AAP2-01 16 15716960 15716960 A T KIAA0430 Nonsense_Mutation p.L764* 0.38 TCGA-BF-AAP2-01 16 17232249 17232249 G A XYLT1 Missense_Mutation p.P576L 0.37 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP2-01 16 19020698 19020698 G A TMC7 Missense_Mutation p.R91Q 0.44 deleterious(0.04) probably_damaging(0.954) TCGA-BF-AAP2-01 16 21108758 21108758 G A DNAH3 Silent p.A861A 0.42 TCGA-BF-AAP2-01 16 22143030 22143030 G A VWA3A Missense_Mutation p.G618S 0.28 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 16 22167219 22167219 C T VWA3A Missense_Mutation p.S1184F 0.13 deleterious_low_confidence(0) benign(0.36) TCGA-BF-AAP2-01 16 23226596 23226596 C T SCNN1G Missense_Mutation p.R586C 0.35 deleterious(0.02) benign(0.247) TCGA-BF-AAP2-01 16 23721859 23721859 C T ERN2 Missense_Mutation p.E119K 0.23 tolerated(0.31) benign(0.002) TCGA-BF-AAP2-01 16 24909428 24909428 C T SLC5A11 Missense_Mutation p.P335L 0.18 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP2-01 16 25189484 25189484 T C LCMT1 3'UTR 0.36 TCGA-BF-AAP2-01 16 2809593 2809593 C T SRRM2 Missense_Mutation p.P255L 0.22 unknown(0) TCGA-BF-AAP2-01 16 28603451 28603451 C T SULT1A2 Silent p.G262G 0.12 TCGA-BF-AAP2-01 16 29102103 29102103 C T RRN3P2 RNA 0.44 TCGA-BF-AAP2-01 16 2946515 2946515 C T FLYWCH2 Missense_Mutation p.P22L 0.55 tolerated(0.17) benign(0.006) TCGA-BF-AAP2-01 16 29811359 29811359 C T KIF22 Nonsense_Mutation p.Q424* 0.40 TCGA-BF-AAP2-01 16 29815386 29815386 G A KIF22 Silent p.K559K 0.40 TCGA-BF-AAP2-01 16 30516733 30516733 G A ITGAL Silent p.G772G 0.24 TCGA-BF-AAP2-01 16 3187362 3187362 C T ZNF213 Silent p.S27S 0.22 TCGA-BF-AAP2-01 16 3255057 3255057 G A OR1F1 Missense_Mutation p.D271N 0.35 deleterious(0.03) benign(0.232) TCGA-BF-AAP2-01 16 3304181 3304181 C T MEFV Missense_Mutation p.G296E 0.40 tolerated(1) benign(0.114) TCGA-BF-AAP2-01 16 46931640 46931640 C T GPT2 Silent p.F108F 0.41 TCGA-BF-AAP2-01 16 47698841 47698841 C T PHKB Silent p.S794S 0.11 TCGA-BF-AAP2-01 16 48162549 48162549 C T ABCC12 Missense_Mutation p.E446K 0.53 tolerated(0.2) benign(0.004) TCGA-BF-AAP2-01 16 48227850 48227850 G A ABCC11 Silent p.I816I 0.32 TCGA-BF-AAP2-01 16 56906609 56906609 C T SLC12A3 Missense_Mutation p.P336S 0.27 tolerated(0.47) benign(0.088) TCGA-BF-AAP2-01 16 57690514 57690514 C T GPR56 Silent p.Y384Y 0.37 TCGA-BF-AAP2-01 16 57713150 57713150 G A GPR97 Missense_Mutation p.S185N 0.46 tolerated(0.11) possibly_damaging(0.859) TCGA-BF-AAP2-01 16 58287927 58287927 C T CCDC113 Missense_Mutation p.S85F 0.39 tolerated(0.4) possibly_damaging(0.568) TCGA-BF-AAP2-01 16 58287928 58287928 C T CCDC113 Silent p.S85S 0.39 TCGA-BF-AAP2-01 16 66943282 66943282 G A CDH16 Silent p.I760I 0.36 TCGA-BF-AAP2-01 16 67576925 67576925 G A FAM65A Missense_Mutation p.E766K 0.41 tolerated(0.15) benign(0.292) TCGA-BF-AAP2-01 16 67912931 67912931 C T EDC4 Silent p.F453F 0.55 TCGA-BF-AAP2-01 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.52 probably_damaging(0.953) TCGA-BF-AAP2-01 16 723130 723130 C T RHOT2 Missense_Mutation p.P577L 0.24 deleterious(0) benign(0.341) TCGA-BF-AAP2-01 16 747103 747103 G A FBXL16 Silent p.I101I 0.43 TCGA-BF-AAP2-01 16 75634019 75634019 C T ADAT1 3'UTR 0.42 TCGA-BF-AAP2-01 16 75634020 75634020 C T ADAT1 3'UTR 0.44 TCGA-BF-AAP2-01 16 76483646 76483646 C T CNTNAP4 Intron 0.44 TCGA-BF-AAP2-01 16 77396160 77396160 C T ADAMTS18 Missense_Mutation p.G353E 0.35 tolerated(0.44) benign(0.013) TCGA-BF-AAP2-01 16 80666935 80666935 T C CDYL2 Missense_Mutation p.N272S 0.39 deleterious(0.01) possibly_damaging(0.789) TCGA-BF-AAP2-01 16 81097481 81097481 G A C16orf46 Missense_Mutation p.P27L 0.17 tolerated(1) benign(0.001) TCGA-BF-AAP2-01 16 82033301 82033301 C T SDR42E1 Silent p.R199R 0.36 TCGA-BF-AAP2-01 16 85132892 85132892 G A FAM92B Missense_Mutation p.H272Y 0.39 tolerated_low_confidence(0.06) benign(0.062) TCGA-BF-AAP2-01 16 8732981 8732981 G A METTL22 Missense_Mutation p.R245Q 0.26 tolerated(0.38) benign(0.166) TCGA-BF-AAP2-01 16 87677927 87677927 C T JPH3 Missense_Mutation p.P149L 0.30 deleterious(0.01) possibly_damaging(0.458) TCGA-BF-AAP2-01 16 88694133 88694133 C T ZC3H18 Missense_Mutation p.P738S 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP2-01 16 89258218 89258218 C T CDH15 Missense_Mutation p.P511S 0.53 tolerated(0.31) benign(0.443) TCGA-BF-AAP2-01 16 89294490 89294490 C T ZNF778 Silent p.F570F 0.45 TCGA-BF-AAP2-01 16 89960142 89960142 C T TCF25 Missense_Mutation p.S235F 0.27 deleterious(0.01) possibly_damaging(0.894) TCGA-BF-AAP2-01 17 10356211 10356211 C T MYH4 Missense_Mutation p.M1050I 0.28 deleterious(0.02) benign(0.064) TCGA-BF-AAP2-01 17 10409173 10409173 C T MYH1 Silent p.R710R 0.53 TCGA-BF-AAP2-01 17 10415771 10415771 G A MYH1 Silent p.F367F 0.27 TCGA-BF-AAP2-01 17 10416239 10416239 T G MYH1 Missense_Mutation p.E283D 0.37 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 17 10418187 10418187 G A MYH1 Silent p.I177I 0.43 TCGA-BF-AAP2-01 17 10429120 10429120 C T MYH2 Missense_Mutation p.E1421K 0.29 deleterious(0) probably_damaging(0.937) TCGA-BF-AAP2-01 17 10433205 10433205 C T MYH2 Missense_Mutation p.D962N 0.22 deleterious(0.01) benign(0.162) TCGA-BF-AAP2-01 17 11556223 11556223 G A DNAH9 Silent p.R833R 0.28 TCGA-BF-AAP2-01 17 11572533 11572533 C T DNAH9 Silent p.L962L 0.10 TCGA-BF-AAP2-01 17 11648227 11648227 G A DNAH9 Silent p.R2075R 0.16 TCGA-BF-AAP2-01 17 15234723 15234723 G A TEKT3 Silent p.S60S 0.13 TCGA-BF-AAP2-01 17 15532408 15532408 G A RP11-385D13.1 Missense_Mutation p.P406S 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP2-01 17 16843696 16843696 G A TNFRSF13B Missense_Mutation p.P192L 0.51 tolerated(0.18) benign(0.164) TCGA-BF-AAP2-01 17 17910445 17910445 C T LRRC48 Missense_Mutation p.P437L 0.44 deleterious(0) possibly_damaging(0.764) TCGA-BF-AAP2-01 17 19705098 19705098 G A ULK2 Missense_Mutation p.S478F 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAP2-01 17 21087072 21087072 G A DHRS7B Missense_Mutation p.D159N 0.49 deleterious(0.01) probably_damaging(0.955) TCGA-BF-AAP2-01 17 2323675 2323675 G A METTL16 Silent p.P426P 0.26 TCGA-BF-AAP2-01 17 25937117 25937117 C T KSR1 Silent p.S635S 0.34 TCGA-BF-AAP2-01 17 26114806 26114806 G A NOS2 Missense_Mutation p.P122L 0.51 tolerated(0.07) possibly_damaging(0.58) TCGA-BF-AAP2-01 17 26722845 26722845 G A SLC46A1 3'UTR 0.40 TCGA-BF-AAP2-01 17 27185179 27185179 C T ERAL1 Silent p.L184L 0.44 TCGA-BF-AAP2-01 17 28384873 28384873 G A EFCAB5 Missense_Mutation p.E849K 0.23 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 17 2867237 2867237 C T RAP1GAP2 Missense_Mutation p.P123S 0.42 tolerated(0.19) benign(0.049) TCGA-BF-AAP2-01 17 29249967 29249967 G A ADAP2 Nonsense_Mutation p.W35* 0.37 TCGA-BF-AAP2-01 17 3101036 3101036 C T OR1A2 Missense_Mutation p.S75F 0.36 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 17 3195346 3195346 G A OR3A1 Silent p.I177I 0.31 TCGA-BF-AAP2-01 17 33690205 33690205 G A SLFN11 Missense_Mutation p.P208S 0.37 tolerated(0.38) benign(0.047) TCGA-BF-AAP2-01 17 33984734 33984734 C T AP2B1 Missense_Mutation p.P638L 0.11 deleterious(0.04) possibly_damaging(0.805) TCGA-BF-AAP2-01 17 34073231 34073231 C T GAS2L2 Missense_Mutation p.G429R 0.32 tolerated(0.1) benign(0.187) TCGA-BF-AAP2-01 17 3483774 3483774 C T SHPK Silent p.V508V 0.34 TCGA-BF-AAP2-01 17 34954638 34954638 C T DHRS11 Missense_Mutation p.S135F 0.05 tolerated(0.13) probably_damaging(0.995) TCGA-BF-AAP2-01 17 35413962 35413962 T C AATF Nonstop_Mutation p.*561Rext*29 0.57 TCGA-BF-AAP2-01 17 35620716 35620716 C T ACACA Missense_Mutation p.A401T 0.41 deleterious(0) benign(0.325) TCGA-BF-AAP2-01 17 36478143 36478143 C T MRPL45 Silent p.I265I 0.17 TCGA-BF-AAP2-01 17 37331358 37331358 G A CACNB1 3'UTR 0.50 TCGA-BF-AAP2-01 17 38024527 38024527 G A ZPBP2 5'UTR 0.45 TCGA-BF-AAP2-01 17 3919689 3919689 G A ZZEF1 Silent p.F2691F 0.34 TCGA-BF-AAP2-01 17 39504750 39504750 C T KRT33A Silent p.K191K 0.08 TCGA-BF-AAP2-01 17 39550308 39550308 G A KRT31 Missense_Mutation p.P404L 0.20 deleterious(0.04) benign(0.118) TCGA-BF-AAP2-01 17 39552810 39552810 G A KRT31 Silent p.S150S 0.41 TCGA-BF-AAP2-01 17 39580615 39580615 C T KRT37 Missense_Mutation p.R54K 0.40 deleterious(0.03) benign(0.062) TCGA-BF-AAP2-01 17 39723926 39723926 C T KRT9 Missense_Mutation p.G491R 0.47 tolerated_low_confidence(0.13) unknown(0) TCGA-BF-AAP2-01 17 39723927 39723927 C T KRT9 Silent p.R490R 0.45 TCGA-BF-AAP2-01 17 40048577 40048577 G A ACLY Silent p.L575L 0.43 TCGA-BF-AAP2-01 17 41246005 41246005 C T BRCA1 Missense_Mutation p.E515K 0.07 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP2-01 17 42476507 42476507 G A GPATCH8 Missense_Mutation p.H980Y 0.23 deleterious(0.01) unknown(0) TCGA-BF-AAP2-01 17 43323271 43323271 G A FMNL1 Nonsense_Mutation p.W1007* 0.19 TCGA-BF-AAP2-01 17 43592082 43592082 G A LRRC37A4P RNA 0.05 TCGA-BF-AAP2-01 17 43592113 43592113 C T LRRC37A4P RNA 0.06 TCGA-BF-AAP2-01 17 43592236 43592236 C T LRRC37A4P RNA 0.14 TCGA-BF-AAP2-01 17 4463124 4463124 G A GGT6 Intron 0.60 TCGA-BF-AAP2-01 17 45507438 45507438 G A EFCAB13 Intron 0.28 TCGA-BF-AAP2-01 17 45755742 45755742 C T KPNB1 Silent p.I772I 0.41 TCGA-BF-AAP2-01 17 45925528 45925528 C T SP6 Missense_Mutation p.G90S 0.44 tolerated_low_confidence(0.33) benign(0.192) TCGA-BF-AAP2-01 17 46198708 46198708 C T SNX11 Silent p.S217S 0.12 TCGA-BF-AAP2-01 17 48356637 48356637 G A TMEM92 Missense_Mutation p.D150N 0.49 tolerated(0.5) benign(0.131) TCGA-BF-AAP2-01 17 48616269 48616269 G A EPN3 Missense_Mutation p.D236N 0.41 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP2-01 17 48696353 48696353 C T CACNA1G Missense_Mutation p.S1922F 0.42 tolerated(0.07) possibly_damaging(0.649) TCGA-BF-AAP2-01 17 48704199 48704199 C T CACNA1G 3'UTR 0.50 TCGA-BF-AAP2-01 17 48917725 48917725 G A WFIKKN2 Missense_Mutation p.G359D 0.37 deleterious(0.02) possibly_damaging(0.795) TCGA-BF-AAP2-01 17 54559940 54559940 C T ANKFN1 3'UTR 0.36 TCGA-BF-AAP2-01 17 55183725 55183725 C T AKAP1 Silent p.V300V 0.43 TCGA-BF-AAP2-01 17 56232583 56232583 C T OR4D1 Silent p.L23L 0.38 TCGA-BF-AAP2-01 17 57351102 57351102 C T GDPD1 Missense_Mutation p.L305F 0.44 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 17 60060431 60060431 G A MED13 Missense_Mutation p.P978L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP2-01 17 60060432 60060432 G A MED13 Missense_Mutation p.P978S 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAP2-01 17 60813254 60813254 G A MARCH10 Intron 0.26 TCGA-BF-AAP2-01 17 61563989 61563989 C T ACE Silent p.N710N 0.17 TCGA-BF-AAP2-01 17 62038676 62038676 G A SCN4A Silent p.I574I 0.44 TCGA-BF-AAP2-01 17 6330023 6330023 C T AIPL1 Silent p.L232L 0.39 TCGA-BF-AAP2-01 17 6683324 6683324 G A FBXO39 Nonsense_Mutation p.W46* 0.71 TCGA-BF-AAP2-01 17 67187415 67187415 G A ABCA10 Missense_Mutation p.S638F 0.31 deleterious(0.01) benign(0.234) TCGA-BF-AAP2-01 17 6900153 6900153 G A ALOX12 Silent p.E48E 0.42 TCGA-BF-AAP2-01 17 70119823 70119823 C T SOX9 Silent p.I275I 0.37 TCGA-BF-AAP2-01 17 71410882 71410882 C T SDK2 Silent p.P795P 0.34 TCGA-BF-AAP2-01 17 72443214 72443214 G A GPRC5C 3'UTR 0.26 TCGA-BF-AAP2-01 17 72469802 72469802 C T CD300A Silent p.F56F 0.20 TCGA-BF-AAP2-01 17 7251292 7251292 G A ACAP1 Nonsense_Mutation p.W465* 0.38 TCGA-BF-AAP2-01 17 72539103 72539103 G A CD300C Missense_Mutation p.P142S 0.44 tolerated(0.21) benign(0.016) TCGA-BF-AAP2-01 17 72588685 72588685 G A C17orf77 Missense_Mutation p.G167E 0.49 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BF-AAP2-01 17 7346000 7346000 C T FGF11 Missense_Mutation p.R166C 0.43 deleterious(0) possibly_damaging(0.825) TCGA-BF-AAP2-01 17 7346475 7346475 C T FGF11 3'UTR 0.55 TCGA-BF-AAP2-01 17 73481987 73481987 C T KIAA0195 Silent p.N60N 0.27 TCGA-BF-AAP2-01 17 73481988 73481988 C T KIAA0195 Missense_Mutation p.R61C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 17 73486821 73486821 G A KIAA0195 Silent p.T370T 0.16 TCGA-BF-AAP2-01 17 73723327 73723327 G A ITGB4 Silent p.V44V 0.22 TCGA-BF-AAP2-01 17 74639589 74639589 C T ST6GALNAC1 Splice_Site p.X44_splice 0.16 TCGA-BF-AAP2-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.53 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 17 7578396 7578396 G A TP53 Silent p.H178H 0.53 TCGA-BF-AAP2-01 17 76198666 76198666 C T AFMID Missense_Mutation p.P81S 0.58 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 17 76565532 76565532 G A DNAH17 Silent p.S374S 0.33 TCGA-BF-AAP2-01 17 76567421 76567421 C T DNAH17 Missense_Mutation p.E258K 0.48 benign(0.012) TCGA-BF-AAP2-01 17 7667462 7667462 G A DNAH2 Silent p.E1069E 0.38 TCGA-BF-AAP2-01 17 7667463 7667463 G A DNAH2 Missense_Mutation p.E1070K 0.37 possibly_damaging(0.493) TCGA-BF-AAP2-01 17 7680195 7680195 G A DNAH2 Missense_Mutation p.M1682I 0.38 benign(0.001) TCGA-BF-AAP2-01 17 7683533 7683533 C T DNAH2 Silent p.A1927A 0.45 TCGA-BF-AAP2-01 17 7707764 7707764 G A DNAH2 Missense_Mutation p.E3055K 0.27 probably_damaging(0.986) TCGA-BF-AAP2-01 17 78269452 78269452 G A RNF213 Silent p.R617R 0.49 TCGA-BF-AAP2-01 17 79078344 79078344 C T BAIAP2 Missense_Mutation p.S366F 0.49 deleterious(0) possibly_damaging(0.896) TCGA-BF-AAP2-01 17 7918369 7918369 G A GUCY2D Silent p.K923K 0.29 TCGA-BF-AAP2-01 17 79287502 79287502 C T TMEM105 Silent p.V113V 0.38 TCGA-BF-AAP2-01 17 8216820 8216820 G A ARHGEF15 Silent p.G312G 0.54 TCGA-BF-AAP2-01 17 8219113 8219113 C T ARHGEF15 Missense_Mutation p.H488Y 0.54 tolerated(0.23) possibly_damaging(0.89) TCGA-BF-AAP2-01 17 8508267 8508267 G A MYH10 Missense_Mutation p.P127S 0.47 possibly_damaging(0.628) TCGA-BF-AAP2-01 17 9570022 9570022 C T USP43 Missense_Mutation p.P232S 0.16 tolerated(0.49) benign(0.01) TCGA-BF-AAP2-01 17 9683286 9683286 C T DHRS7C Missense_Mutation p.E113K 0.24 deleterious(0.03) probably_damaging(0.96) TCGA-BF-AAP2-01 17 97004 97004 G A RPH3AL Nonsense_Mutation p.R171* 0.41 TCGA-BF-AAP2-01 18 19997006 19997006 C T CTAGE1 Missense_Mutation p.D257N 0.20 tolerated(0.08) benign(0.059) TCGA-BF-AAP2-01 18 28576921 28576921 C T DSC3 Missense_Mutation p.E777K 0.40 deleterious(0) possibly_damaging(0.901) TCGA-BF-AAP2-01 18 28604320 28604320 C T DSC3 Missense_Mutation p.R257K 0.27 tolerated(0.31) benign(0.039) TCGA-BF-AAP2-01 18 28934626 28934626 C T DSG1 Missense_Mutation p.P823S 0.44 deleterious(0.03) benign(0.343) TCGA-BF-AAP2-01 18 28971146 28971146 G A DSG4 Missense_Mutation p.D264N 0.46 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 18 28979374 28979374 G A DSG4 Missense_Mutation p.G382E 0.44 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP2-01 18 29111051 29111051 C T DSG2 Silent p.P372P 0.40 TCGA-BF-AAP2-01 18 29451003 29451003 C T TRAPPC8 Missense_Mutation p.E715K 0.39 deleterious(0) possibly_damaging(0.829) TCGA-BF-AAP2-01 18 3102545 3102545 C T MYOM1 Missense_Mutation p.E1168K 0.36 tolerated(1) benign(0.008) TCGA-BF-AAP2-01 18 47373552 47373552 C T MYO5B Missense_Mutation p.E1475K 0.33 deleterious(0.01) benign(0.371) TCGA-BF-AAP2-01 18 47390610 47390610 C T MYO5B Silent p.K1248K 0.42 TCGA-BF-AAP2-01 18 47429071 47429071 C T MYO5B Missense_Mutation p.E902K 0.27 tolerated(0.09) benign(0.032) TCGA-BF-AAP2-01 18 47429181 47429181 G A MYO5B Missense_Mutation p.T865I 0.46 tolerated(0.45) benign(0.022) TCGA-BF-AAP2-01 18 50734115 50734115 C T DCC Nonsense_Mutation p.R597* 0.42 TCGA-BF-AAP2-01 18 52571577 52571577 C T CCDC68 3'UTR 0.21 TCGA-BF-AAP2-01 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.46 tolerated(0.12) probably_damaging(0.998) TCGA-BF-AAP2-01 18 56939829 56939829 G A RAX Missense_Mutation p.P103S 0.37 tolerated(0.21) benign(0.039) TCGA-BF-AAP2-01 18 60036539 60036539 C T TNFRSF11A Silent p.S463S 0.49 TCGA-BF-AAP2-01 18 60241991 60241991 C T ZCCHC2 Missense_Mutation p.P893S 0.48 tolerated(0.06) probably_damaging(0.998) TCGA-BF-AAP2-01 18 60241992 60241992 C T ZCCHC2 Missense_Mutation p.P893L 0.47 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 18 61582740 61582740 C T SERPINB10 5'UTR 0.05 TCGA-BF-AAP2-01 18 6239724 6239724 C T L3MBTL4 Missense_Mutation p.D234N 0.36 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP2-01 18 64176266 64176266 G A CDH19 Silent p.I598I 0.41 TCGA-BF-AAP2-01 18 6974958 6974958 C T LAMA1 Silent p.L2189L 0.40 TCGA-BF-AAP2-01 18 6986207 6986207 C T LAMA1 Missense_Mutation p.E1770K 0.18 tolerated(0.06) benign(0.082) TCGA-BF-AAP2-01 18 8784102 8784102 G A SOGA2 Missense_Mutation p.G331E 0.13 tolerated(0.13) possibly_damaging(0.586) TCGA-BF-AAP2-01 19 1031088 1031088 C T CNN2 Missense_Mutation p.P28S 0.34 tolerated(0.14) benign(0.05) TCGA-BF-AAP2-01 19 10431541 10431541 G A RAVER1 Silent p.N537N 0.21 TCGA-BF-AAP2-01 19 10561537 10561537 C T PDE4A Silent p.L235L 0.50 TCGA-BF-AAP2-01 19 10662791 10662791 C T ATG4D Silent p.P372P 0.40 TCGA-BF-AAP2-01 19 10662792 10662792 C T ATG4D Silent p.L373L 0.39 TCGA-BF-AAP2-01 19 11213450 11213450 G A LDLR Missense_Mutation p.E101K 0.42 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP2-01 19 12807446 12807446 G A FBXW9 5'UTR 0.09 TCGA-BF-AAP2-01 19 13080615 13080615 C G DAND5 Silent p.A47A 0.41 TCGA-BF-AAP2-01 19 13220773 13220773 G A TRMT1 Silent p.F354F 0.35 TCGA-BF-AAP2-01 19 13862583 13862583 C T CCDC130 5'UTR 0.44 TCGA-BF-AAP2-01 19 14580255 14580255 C T PKN1 Silent p.F699F 0.29 TCGA-BF-AAP2-01 19 1466381 1466381 G A APC2 Silent p.K1027K 0.43 TCGA-BF-AAP2-01 19 14779639 14779639 A G EMR3 Silent p.F17F 0.45 TCGA-BF-AAP2-01 19 14952001 14952001 G A OR7A10 Missense_Mutation p.S230L 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP2-01 19 15917882 15917882 G A OR10H1 3'UTR 0.22 TCGA-BF-AAP2-01 19 16926023 16926023 C T NWD1 3'UTR 0.25 TCGA-BF-AAP2-01 19 17049218 17049218 G A CPAMD8 Silent p.F991F 0.44 TCGA-BF-AAP2-01 19 17081796 17081796 C T CPAMD8 Silent p.R753R 0.37 TCGA-BF-AAP2-01 19 17081797 17081797 C T CPAMD8 Missense_Mutation p.R753Q 0.37 deleterious(0.05) possibly_damaging(0.742) TCGA-BF-AAP2-01 19 17186248 17186248 C T HAUS8 5'UTR 0.25 TCGA-BF-AAP2-01 19 17760345 17760345 C T UNC13A Silent p.R497R 0.32 TCGA-BF-AAP2-01 19 17768896 17768896 C T UNC13A Missense_Mutation p.E248K 0.12 tolerated_low_confidence(0.09) benign(0.01) TCGA-BF-AAP2-01 19 17875193 17875193 C T FCHO1 Silent p.I43I 0.37 TCGA-BF-AAP2-01 19 18120466 18120466 C T ARRDC2 Silent p.S185S 0.36 TCGA-BF-AAP2-01 19 18321745 18321745 C T PDE4C Silent p.R711R 0.30 TCGA-BF-AAP2-01 19 18321879 18321879 C T PDE4C Missense_Mutation p.E667K 0.33 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-BF-AAP2-01 19 18453677 18453677 C T PGPEP1 Missense_Mutation p.P15S 0.36 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 19 19338544 19338544 C T NCAN Silent p.F705F 0.42 TCGA-BF-AAP2-01 19 22575698 22575698 T A ZNF98 Missense_Mutation p.K113N 0.32 tolerated(0.28) probably_damaging(0.981) TCGA-BF-AAP2-01 19 2271458 2271458 C T OAZ1 Missense_Mutation p.P74S 0.36 tolerated(0.38) possibly_damaging(0.715) TCGA-BF-AAP2-01 19 2271459 2271459 C T OAZ1 Missense_Mutation p.P74L 0.36 tolerated(0.46) possibly_damaging(0.781) TCGA-BF-AAP2-01 19 22952122 22952122 G A ZNF99 Missense_Mutation p.S3L 0.42 tolerated(0.78) benign(0.159) TCGA-BF-AAP2-01 19 2877724 2877724 G A ZNF556 Silent p.G256G 0.44 TCGA-BF-AAP2-01 19 30936215 30936215 G A ZNF536 Silent p.L582L 0.28 TCGA-BF-AAP2-01 19 33623194 33623194 G A WDR88 Missense_Mutation p.R40K 0.52 tolerated_low_confidence(0.55) benign(0.006) TCGA-BF-AAP2-01 19 35449834 35449834 G A ZNF792 Missense_Mutation p.P309S 0.11 tolerated(0.11) benign(0.398) TCGA-BF-AAP2-01 19 35657253 35657253 G A FXYD5 Intron 0.24 TCGA-BF-AAP2-01 19 35850639 35850639 T C FFAR3 Missense_Mutation p.F283L 0.30 tolerated(0.35) benign(0.074) TCGA-BF-AAP2-01 19 38160326 38160326 G A ZNF781 Silent p.L242L 0.35 TCGA-BF-AAP2-01 19 39826105 39826105 G A GMFG Nonsense_Mutation p.R24* 0.47 TCGA-BF-AAP2-01 19 41066133 41066133 C T SPTBN4 Silent p.I1913I 0.47 TCGA-BF-AAP2-01 19 4234740 4234740 C T EBI3 Silent p.P152P 0.31 TCGA-BF-AAP2-01 19 42879767 42879767 A T MEGF8 Missense_Mutation p.N2393Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 19 4292824 4292824 C T TMIGD2 Silent p.E207E 0.09 TCGA-BF-AAP2-01 19 43093138 43093138 C T CEACAM8 Silent p.G252G 0.42 TCGA-BF-AAP2-01 19 43234186 43234186 G A PSG3 Silent p.I244I 0.28 TCGA-BF-AAP2-01 19 43406513 43406513 C T PSG6 3'Flank 0.41 TCGA-BF-AAP2-01 19 44153149 44153149 G A PLAUR Nonsense_Mutation p.Q301* 0.46 TCGA-BF-AAP2-01 19 44536205 44536205 C T ZNF222 Silent p.F166F 0.44 TCGA-BF-AAP2-01 19 45211302 45211302 G A CEACAM16 Nonsense_Mutation p.W370* 0.42 TCGA-BF-AAP2-01 19 4538663 4538663 G A LRG1 Silent p.F111F 0.40 TCGA-BF-AAP2-01 19 4550177 4550177 G A SEMA6B Missense_Mutation p.P410L 0.10 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 19 46215724 46215724 G A FBXO46 Missense_Mutation p.P344S 0.42 tolerated(0.46) probably_damaging(0.932) TCGA-BF-AAP2-01 19 47823780 47823780 C T C5AR1 Missense_Mutation p.A249V 0.31 tolerated(0.99) benign(0.005) TCGA-BF-AAP2-01 19 47844834 47844834 G A C5AR2 Missense_Mutation p.A260T 0.28 tolerated(0.57) benign(0.066) TCGA-BF-AAP2-01 19 48220249 48220249 C T EHD2 Missense_Mutation p.P127L 0.36 tolerated(0.18) benign(0.003) TCGA-BF-AAP2-01 19 48665528 48665528 G A LIG1 Missense_Mutation p.P33L 0.49 deleterious_low_confidence(0.01) benign(0.169) TCGA-BF-AAP2-01 19 48789936 48789936 G A ZNF114 Missense_Mutation p.R352K 0.21 tolerated(0.45) benign(0.246) TCGA-BF-AAP2-01 19 49362837 49362837 G A PLEKHA4 Missense_Mutation p.S194L 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-BF-AAP2-01 19 49797668 49797668 G A SLC6A16 Missense_Mutation p.L458F 0.31 deleterious(0.02) possibly_damaging(0.582) TCGA-BF-AAP2-01 19 49839021 49839021 G A CD37 Silent p.K40K 0.43 TCGA-BF-AAP2-01 19 50310502 50310502 C T FUZ Missense_Mutation p.R388Q 0.37 tolerated(0.12) probably_damaging(0.947) TCGA-BF-AAP2-01 19 51563854 51563854 C T KLK13 Silent p.K25K 0.24 TCGA-BF-AAP2-01 19 51581174 51581174 G A KLK14 3'UTR 0.67 TCGA-BF-AAP2-01 19 51581224 51581224 G A KLK14 3'UTR 0.31 TCGA-BF-AAP2-01 19 51628315 51628315 C T SIGLEC9 Silent p.S28S 0.54 TCGA-BF-AAP2-01 19 52327256 52327256 C T FPR3 Silent p.V85V 0.34 TCGA-BF-AAP2-01 19 52327484 52327484 C T FPR3 Silent p.F161F 0.34 TCGA-BF-AAP2-01 19 52817450 52817450 G A ZNF480 Silent p.A39A 0.42 TCGA-BF-AAP2-01 19 53762454 53762454 C T VN1R2 Missense_Mutation p.L276F 0.13 tolerated(0.07) possibly_damaging(0.695) TCGA-BF-AAP2-01 19 53884090 53884090 C T ZNF525 Silent p.S86S 0.10 TCGA-BF-AAP2-01 19 53911644 53911644 C T ZNF765 Missense_Mutation p.T279I 0.11 tolerated(0.16) benign(0.314) TCGA-BF-AAP2-01 19 54140105 54140105 C T DPRX Missense_Mutation p.H147Y 0.39 deleterious(0) possibly_damaging(0.879) TCGA-BF-AAP2-01 19 54695624 54695624 C T TSEN34 Missense_Mutation p.A99V 0.44 tolerated(0.42) benign(0.002) TCGA-BF-AAP2-01 19 55046921 55046921 G A KIR3DX1 Missense_Mutation p.E156K 0.51 tolerated(0.25) benign(0.214) TCGA-BF-AAP2-01 19 55144676 55144676 G A LILRB1 Missense_Mutation p.A390T 0.50 deleterious(0.01) benign(0.119) TCGA-BF-AAP2-01 19 55298013 55298013 G A KIR2DL1 3'Flank 0.31 TCGA-BF-AAP2-01 19 55350977 55350977 G A KIR2DS4 Silent p.G155G 0.41 TCGA-BF-AAP2-01 19 55363618 55363618 G A KIR3DL2 Missense_Mutation p.S79N 0.93 tolerated(0.6) benign(0.008) TCGA-BF-AAP2-01 19 55452315 55452315 C T NLRP7 Silent p.S112S 0.36 TCGA-BF-AAP2-01 19 55525887 55525887 G A GP6 Missense_Mutation p.P476S 0.35 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-BF-AAP2-01 19 55699526 55699526 C T PTPRH Missense_Mutation p.D799N 0.42 benign(0.275) TCGA-BF-AAP2-01 19 56244495 56244495 C T NLRP9 Silent p.K234K 0.40 TCGA-BF-AAP2-01 19 56321699 56321699 G A NLRP11 Nonsense_Mutation p.Q93* 0.36 TCGA-BF-AAP2-01 19 56369831 56369831 G A NLRP4 Missense_Mutation p.G358R 0.35 tolerated(0.06) possibly_damaging(0.882) TCGA-BF-AAP2-01 19 56499263 56499263 C T NLRP8 Missense_Mutation p.S1044F 0.10 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-BF-AAP2-01 19 56703300 56703300 C T ZSCAN5B Silent p.V169V 0.44 TCGA-BF-AAP2-01 19 56935330 56935330 C T ZNF583 Missense_Mutation p.P435S 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 19 56935331 56935331 C T ZNF583 Missense_Mutation p.P435L 0.33 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 19 57081712 57081712 G A ZNF470 Missense_Mutation p.G11E 0.32 deleterious(0.04) possibly_damaging(0.554) TCGA-BF-AAP2-01 19 57293402 57293402 C T ZIM2 Missense_Mutation p.E189K 0.36 deleterious(0) probably_damaging(0.913) TCGA-BF-AAP2-01 19 57325989 57325989 C T PEG3 Missense_Mutation p.R1274K 0.55 tolerated(0.59) benign(0.23) TCGA-BF-AAP2-01 19 57329186 57329186 C T PEG3 Missense_Mutation p.D264N 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP2-01 19 5831645 5831645 G A FUT6 Missense_Mutation p.H312Y 0.30 tolerated(0.07) benign(0.012) TCGA-BF-AAP2-01 19 58438836 58438836 G A ZNF418 Missense_Mutation p.S238F 0.48 tolerated(0.1) benign(0.115) TCGA-BF-AAP2-01 19 58452512 58452512 G A ZNF256 Missense_Mutation p.S555F 0.48 tolerated(0.07) possibly_damaging(0.882) TCGA-BF-AAP2-01 19 6854071 6854071 G A VAV1 Missense_Mutation p.G816R 0.32 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 19 6908704 6908704 C T EMR1 Missense_Mutation p.S348F 0.39 deleterious(0) possibly_damaging(0.684) TCGA-BF-AAP2-01 19 7152836 7152836 G A INSR Missense_Mutation p.S711F 0.28 tolerated(0.07) benign(0.057) TCGA-BF-AAP2-01 19 7619567 7619567 C T PNPLA6 Silent p.I874I 0.40 TCGA-BF-AAP2-01 19 8841471 8841471 C T OR2Z1 Silent p.L27L 0.29 TCGA-BF-AAP2-01 19 8841633 8841633 G A OR2Z1 Missense_Mutation p.M81I 0.23 tolerated(0.08) benign(0.073) TCGA-BF-AAP2-01 19 9047386 9047386 G A MUC16 Silent p.T11415T 0.38 TCGA-BF-AAP2-01 19 9048919 9048919 C T MUC16 Silent p.E10904E 0.07 TCGA-BF-AAP2-01 19 9060379 9060379 G A MUC16 Missense_Mutation p.P9023S 0.34 unknown(0) TCGA-BF-AAP2-01 19 9069285 9069285 G A MUC16 Missense_Mutation p.S6054F 0.21 unknown(0) TCGA-BF-AAP2-01 19 9076623 9076623 C T MUC16 Missense_Mutation p.G3608E 0.39 unknown(0) TCGA-BF-AAP2-01 19 9089464 9089464 C T MUC16 Missense_Mutation p.R784K 0.50 unknown(0) TCGA-BF-AAP2-01 19 9204251 9204251 G A OR1M1 Missense_Mutation p.D111N 0.36 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 19 9204498 9204498 C T OR1M1 Missense_Mutation p.S193F 0.42 tolerated(0.87) benign(0.016) TCGA-BF-AAP2-01 19 9237504 9237504 C T OR7G3 Silent p.G41G 0.47 TCGA-BF-AAP2-01 19 9324768 9324768 G A OR7D4 Missense_Mutation p.S249F 0.55 tolerated(0.08) benign(0.05) TCGA-BF-AAP2-01 19 9325512 9325512 A G OR7D4 Translation_Start_Site p.M1? 0.25 deleterious(0) possibly_damaging(0.776) TCGA-BF-AAP2-01 19 9361960 9361960 C T OR7E24 Missense_Mutation p.L81F 0.11 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 100588812 100588812 G A SASS6 Missense_Mutation p.P54S 0.10 deleterious(0.04) possibly_damaging(0.729) TCGA-BF-AAP2-01 1 101190342 101190342 C T VCAM1 Missense_Mutation p.T275I 0.11 deleterious(0) benign(0.443) TCGA-BF-AAP2-01 1 10195073 10195073 G A UBE4B Missense_Mutation p.G685R 0.46 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 102290708 102290708 C T OLFM3 Missense_Mutation p.E156K 0.43 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP2-01 1 109727682 109727682 C T KIAA1324 Missense_Mutation p.S323F 0.38 tolerated(0.12) benign(0.036) TCGA-BF-AAP2-01 1 110257929 110257929 C T GSTM5 Intron 0.58 TCGA-BF-AAP2-01 1 111147023 111147023 C T KCNA2 Missense_Mutation p.E128K 0.31 deleterious(0.03) probably_damaging(0.975) TCGA-BF-AAP2-01 1 112524833 112524833 G A KCND3 Silent p.A172A 0.15 TCGA-BF-AAP2-01 1 112524973 112524973 C T KCND3 Missense_Mutation p.E126K 0.33 deleterious(0.02) benign(0) TCGA-BF-AAP2-01 1 114092178 114092178 C T MAGI3 Nonsense_Mutation p.Q120* 0.51 TCGA-BF-AAP2-01 1 115222897 115222897 T A AMPD1 Missense_Mutation p.L283F 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-BF-AAP2-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.47 tolerated(0.06) benign(0.006) TCGA-BF-AAP2-01 1 115576717 115576717 T G TSHB Missense_Mutation p.S96A 0.39 deleterious(0.01) possibly_damaging(0.892) TCGA-BF-AAP2-01 1 116605441 116605441 C T SLC22A15 Silent p.T410T 0.49 TCGA-BF-AAP2-01 1 118166091 118166091 C T FAM46C Missense_Mutation p.P201S 0.39 tolerated(0.08) benign(0.005) TCGA-BF-AAP2-01 1 120050160 120050160 C T HSD3B1 Missense_Mutation p.R21C 0.31 tolerated(0.19) benign(0.052) TCGA-BF-AAP2-01 1 12520332 12520332 C T VPS13D Silent p.F4181F 0.34 TCGA-BF-AAP2-01 1 12835120 12835120 C T PRAMEF12 Missense_Mutation p.P37L 0.17 tolerated(0.05) probably_damaging(0.991) TCGA-BF-AAP2-01 1 12835246 12835246 G A PRAMEF12 Missense_Mutation p.R79Q 0.35 tolerated(1) benign(0) TCGA-BF-AAP2-01 1 12836001 12836001 G A PRAMEF12 Silent p.E201E 0.42 TCGA-BF-AAP2-01 1 12887152 12887152 C T PRAMEF11 Missense_Mutation p.M235I 0.21 tolerated(0.1) benign(0.009) TCGA-BF-AAP2-01 1 12887615 12887615 G A PRAMEF11 Missense_Mutation p.A81V 0.26 tolerated(0.43) benign(0.057) TCGA-BF-AAP2-01 1 12942205 12942205 C T PRAMEF4 Nonsense_Mutation p.W115* 0.27 TCGA-BF-AAP2-01 1 12979892 12979892 G A PRAMEF7 Missense_Mutation p.D362N 0.14 probably_damaging(0.999) TCGA-BF-AAP2-01 1 1389878 1389878 C T ATAD3C Nonsense_Mutation p.Q126* 0.33 TCGA-BF-AAP2-01 1 142713786 142713786 C T RP11-417J8.6 RNA 0.32 TCGA-BF-AAP2-01 1 144865887 144865887 G A PDE4DIP Missense_Mutation p.P1898L 0.17 tolerated(0.41) possibly_damaging(0.543) TCGA-BF-AAP2-01 1 144880787 144880787 C T PDE4DIP Missense_Mutation p.G1281S 0.23 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 144994716 144994716 G A PDE4DIP Missense_Mutation p.R6C 0.11 deleterious(0) possibly_damaging(0.891) TCGA-BF-AAP2-01 1 147231145 147231145 G A GJA5 Nonsense_Mutation p.Q68* 0.10 TCGA-BF-AAP2-01 1 150445082 150445082 C T RPRD2 Missense_Mutation p.P1220S 0.27 tolerated_low_confidence(0.05) benign(0.01) TCGA-BF-AAP2-01 1 151259352 151259352 C T ZNF687 Silent p.F195F 0.15 TCGA-BF-AAP2-01 1 151316236 151316236 G A RFX5 Silent p.V226V 0.41 TCGA-BF-AAP2-01 1 152079923 152079923 G A TCHH Missense_Mutation p.P1924S 0.28 possibly_damaging(0.641) TCGA-BF-AAP2-01 1 152080417 152080417 C A TCHH Missense_Mutation p.R1759M 0.26 unknown(0) TCGA-BF-AAP2-01 1 152127515 152127515 C T RPTN Missense_Mutation p.G687D 0.34 tolerated(0.34) benign(0.059) TCGA-BF-AAP2-01 1 152275958 152275958 C T FLG Missense_Mutation p.G3802R 0.14 unknown(0) TCGA-BF-AAP2-01 1 152276314 152276314 C T FLG Missense_Mutation p.G3683E 0.31 unknown(0) TCGA-BF-AAP2-01 1 152278716 152278716 C T FLG Silent p.R2882R 0.11 TCGA-BF-AAP2-01 1 152326000 152326000 C T FLG2 Missense_Mutation p.G1421E 0.06 benign(0.341) TCGA-BF-AAP2-01 1 152484192 152484192 G A LCE5A Missense_Mutation p.S61N 0.30 tolerated_low_confidence(0.85) unknown(0) TCGA-BF-AAP2-01 1 152573191 152573191 C T LCE3C 5'UTR 0.56 TCGA-BF-AAP2-01 1 152636704 152636704 C T LCE2D Silent p.S41S 0.36 TCGA-BF-AAP2-01 1 153513938 153513938 A C S100A5 5'UTR 0.25 TCGA-BF-AAP2-01 1 153750819 153750819 C T SLC27A3 Silent p.S495S 0.28 TCGA-BF-AAP2-01 1 154099831 154099831 C T NUP210L Missense_Mutation p.V381I 0.27 tolerated(0.87) benign(0.078) TCGA-BF-AAP2-01 1 154296085 154296085 G A AQP10 Silent p.L170L 0.45 TCGA-BF-AAP2-01 1 154474052 154474052 C T SHE Missense_Mutation p.D151N 0.33 deleterious(0.02) benign(0.4) TCGA-BF-AAP2-01 1 154480899 154480899 G A TDRD10 Missense_Mutation p.G28E 0.41 tolerated(0.27) benign(0.36) TCGA-BF-AAP2-01 1 155629894 155629894 G A YY1AP1 Missense_Mutation p.P741S 0.35 tolerated_low_confidence(0.05) benign(0.17) TCGA-BF-AAP2-01 1 157516898 157516898 G A FCRL5 Missense_Mutation p.R48C 0.39 tolerated(0.06) possibly_damaging(0.773) TCGA-BF-AAP2-01 1 157771809 157771809 G A FCRL1 Missense_Mutation p.S261F 0.37 deleterious(0.02) possibly_damaging(0.6) TCGA-BF-AAP2-01 1 157772245 157772245 C T FCRL1 Missense_Mutation p.D177N 0.35 deleterious(0.05) probably_damaging(0.951) TCGA-BF-AAP2-01 1 158324454 158324454 C T CD1E Nonsense_Mutation p.Q116* 0.39 TCGA-BF-AAP2-01 1 158325784 158325784 G A CD1E Missense_Mutation p.E265K 0.08 deleterious(0.01) possibly_damaging(0.676) TCGA-BF-AAP2-01 1 158368954 158368954 C T OR10T2 Silent p.Q101Q 0.18 TCGA-BF-AAP2-01 1 158390164 158390164 G A OR10K2 Missense_Mutation p.H165Y 0.16 tolerated(0.08) benign(0.007) TCGA-BF-AAP2-01 1 158605798 158605798 C T SPTA1 Silent p.L1779L 0.39 TCGA-BF-AAP2-01 1 158609736 158609736 C T SPTA1 Missense_Mutation p.G1600E 0.41 deleterious(0.04) probably_damaging(1) TCGA-BF-AAP2-01 1 158724937 158724937 C T OR6K6 Missense_Mutation p.S111F 0.44 tolerated(0.06) benign(0.031) TCGA-BF-AAP2-01 1 15893754 15893754 A G DNAJC16 Missense_Mutation p.T647A 0.38 tolerated(0.21) benign(0.024) TCGA-BF-AAP2-01 1 159163686 159163686 C T CADM3 Missense_Mutation p.P217S 0.45 tolerated(0.42) benign(0.008) TCGA-BF-AAP2-01 1 159283997 159283997 C T OR10J3 Silent p.G151G 0.15 TCGA-BF-AAP2-01 1 159799920 159799920 C T SLAMF8 Missense_Mutation p.S102F 0.40 deleterious(0.01) probably_damaging(0.945) TCGA-BF-AAP2-01 1 160309749 160309749 G A COPA Missense_Mutation p.H60Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 1 16073406 16073406 G A TMEM82 Missense_Mutation p.V268M 0.50 deleterious(0) probably_damaging(0.963) TCGA-BF-AAP2-01 1 160853272 160853272 G A ITLN1 Missense_Mutation p.P35S 0.43 tolerated(0.92) benign(0) TCGA-BF-AAP2-01 1 160914997 160914997 C T ITLN2 Missense_Mutation p.G304E 0.35 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP2-01 1 162336990 162336990 C T RP11-565P22.6 Silent p.P104P 0.05 TCGA-BF-AAP2-01 1 165173126 165173126 G A LMX1A Silent p.F380F 0.44 TCGA-BF-AAP2-01 1 166962009 166962009 G A MAEL Missense_Mutation p.E138K 0.05 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 167096099 167096099 G A DUSP27 Silent p.G577G 0.29 TCGA-BF-AAP2-01 1 167096100 167096100 G A DUSP27 Missense_Mutation p.E578K 0.29 tolerated(0.26) benign(0.063) TCGA-BF-AAP2-01 1 167863144 167863144 G A ADCY10 Missense_Mutation p.P259S 0.34 tolerated(0.77) benign(0.04) TCGA-BF-AAP2-01 1 168278049 168278049 C T TBX19 Missense_Mutation p.S329F 0.12 deleterious(0.03) possibly_damaging(0.804) TCGA-BF-AAP2-01 1 170955812 170955812 G A MROH9 Silent p.L280L 0.38 TCGA-BF-AAP2-01 1 171310808 171310808 C T FMO4 Missense_Mutation p.P503S 0.10 tolerated(0.91) benign(0.018) TCGA-BF-AAP2-01 1 171540514 171540514 C T PRRC2C Missense_Mutation p.S2234F 0.18 probably_damaging(0.967) TCGA-BF-AAP2-01 1 172001638 172001638 G A DNM3 Missense_Mutation p.R229K 0.40 tolerated(0.05) probably_damaging(1) TCGA-BF-AAP2-01 1 172001639 172001639 G A DNM3 Silent p.R229R 0.38 TCGA-BF-AAP2-01 1 173470167 173470167 C T SLC9C2 3'UTR 0.11 TCGA-BF-AAP2-01 1 173506151 173506151 C T SLC9C2 Missense_Mutation p.G529R 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAP2-01 1 173616054 173616054 C T ANKRD45 Missense_Mutation p.E143K 0.46 tolerated(0.57) benign(0.005) TCGA-BF-AAP2-01 1 175048495 175048495 G C TNN Missense_Mutation p.G146R 0.67 deleterious(0) probably_damaging(0.962) TCGA-BF-AAP2-01 1 176525686 176525686 G A PAPPA2 Silent p.G76G 0.09 TCGA-BF-AAP2-01 1 176525903 176525903 G A PAPPA2 Missense_Mutation p.G149S 0.41 deleterious_low_confidence(0.03) benign(0.175) TCGA-BF-AAP2-01 1 176564114 176564114 G A PAPPA2 Silent p.A458A 0.56 TCGA-BF-AAP2-01 1 177030382 177030382 C T ASTN1 Silent p.E101E 0.07 TCGA-BF-AAP2-01 1 177250054 177250054 C T BRINP2 Missense_Mutation p.T581I 0.31 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 1 178822782 178822782 G A ANGPTL1 Nonsense_Mutation p.Q322* 0.24 TCGA-BF-AAP2-01 1 179660070 179660070 G A TDRD5 Missense_Mutation p.E1034K 0.36 deleterious_low_confidence(0.01) benign(0.039) TCGA-BF-AAP2-01 1 179851738 179851738 C T TOR1AIP1 Missense_Mutation p.P34L 0.53 deleterious_low_confidence(0.03) benign(0.154) TCGA-BF-AAP2-01 1 180166035 180166035 G A QSOX1 Missense_Mutation p.G703R 0.09 tolerated(0.13) benign(0.02) TCGA-BF-AAP2-01 1 180853237 180853237 C T XPR1 3'UTR 0.36 TCGA-BF-AAP2-01 1 180905360 180905360 C T KIAA1614 Missense_Mutation p.S772F 0.23 deleterious(0.02) possibly_damaging(0.747) TCGA-BF-AAP2-01 1 183273871 183273871 C T NMNAT2 Intron 0.31 TCGA-BF-AAP2-01 1 186277534 186277534 G A PRG4 Missense_Mutation p.E895K 0.11 unknown(0) TCGA-BF-AAP2-01 1 197396684 197396684 C T CRB1 Silent p.V743V 0.17 TCGA-BF-AAP2-01 1 198672465 198672465 C T PTPRC Missense_Mutation p.P208S 0.15 tolerated(0.08) benign(0.01) TCGA-BF-AAP2-01 1 198677384 198677384 C T PTPRC Nonsense_Mutation p.Q343* 0.49 TCGA-BF-AAP2-01 1 198704363 198704363 G A PTPRC Silent p.Q795Q 0.51 TCGA-BF-AAP2-01 1 201817534 201817534 T A IPO9 Missense_Mutation p.I109N 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 1 202194551 202194551 G A LGR6 Silent p.L71L 0.27 TCGA-BF-AAP2-01 1 203025570 203025570 C T PPFIA4 Missense_Mutation p.S219F 0.42 tolerated(0.1) benign(0.181) TCGA-BF-AAP2-01 1 205053024 205053024 G A TMEM81 Missense_Mutation p.S142F 0.40 deleterious(0.01) possibly_damaging(0.565) TCGA-BF-AAP2-01 1 205119832 205119832 G A DSTYK Missense_Mutation p.H815Y 0.42 deleterious(0) probably_damaging(0.924) TCGA-BF-AAP2-01 1 20517265 20517265 C T UBXN10 Missense_Mutation p.P71S 0.34 tolerated(0.15) benign(0.025) TCGA-BF-AAP2-01 1 205272645 205272645 A G NUAK2 Missense_Mutation p.L607P 0.32 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-BF-AAP2-01 1 205632298 205632298 G A SLC45A3 Silent p.F207F 0.50 TCGA-BF-AAP2-01 1 205887992 205887992 C T SLC26A9 Silent p.V744V 0.47 TCGA-BF-AAP2-01 1 206331020 206331020 G A CTSE Splice_Site p.X343_splice 0.14 TCGA-BF-AAP2-01 1 207087298 207087298 G A FAIM3 Missense_Mutation p.T60I 0.46 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 207697031 207697031 G A CR1 Missense_Mutation p.G188E 0.29 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 1 209803144 209803144 C T LAMB3 Missense_Mutation p.R357Q 0.18 tolerated(0.08) possibly_damaging(0.459) TCGA-BF-AAP2-01 1 21191152 21191152 G A EIF4G3 Silent p.A891A 0.08 TCGA-BF-AAP2-01 1 21191153 21191153 G A EIF4G3 Missense_Mutation p.A891V 0.09 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 211956750 211956750 G A LPGAT1 Missense_Mutation p.P183L 0.17 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 212792521 212792521 G A ATF3 Intron 0.17 TCGA-BF-AAP2-01 1 214816304 214816304 C T CENPF Silent p.T1541T 0.37 TCGA-BF-AAP2-01 1 215751065 215751065 C T KCTD3 Missense_Mutation p.P104S 0.38 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP2-01 1 215821986 215821986 C T USH2A Silent p.L4822L 0.42 TCGA-BF-AAP2-01 1 215847782 215847782 C T USH2A Missense_Mutation p.E4491K 0.39 benign(0.386) TCGA-BF-AAP2-01 1 216040371 216040371 G A USH2A Silent p.I2941I 0.32 TCGA-BF-AAP2-01 1 22032274 22032274 G A USP48 Missense_Mutation p.P777L 0.55 tolerated(0.15) possibly_damaging(0.696) TCGA-BF-AAP2-01 1 222717052 222717052 C T HHIPL2 Nonsense_Mutation p.W267* 0.41 TCGA-BF-AAP2-01 1 224495826 224495826 G A NVL Missense_Mutation p.P161L 0.09 deleterious(0.01) benign(0.003) TCGA-BF-AAP2-01 1 226180120 226180120 G A SDE2 Silent p.L167L 0.09 TCGA-BF-AAP2-01 1 227073296 227073296 C T PSEN2 Silent p.S138S 0.38 TCGA-BF-AAP2-01 1 227198756 227198756 G A CDC42BPA Intron 0.40 TCGA-BF-AAP2-01 1 227239678 227239678 G A CDC42BPA Intron 0.40 TCGA-BF-AAP2-01 1 227239679 227239679 G A CDC42BPA Intron 0.40 TCGA-BF-AAP2-01 1 228005171 228005171 C T PRSS38 Silent p.V191V 0.69 TCGA-BF-AAP2-01 1 228399619 228399619 G A OBSCN Silent p.K45K 0.15 TCGA-BF-AAP2-01 1 228482574 228482574 C T OBSCN Missense_Mutation p.P4259L 0.51 possibly_damaging(0.843) TCGA-BF-AAP2-01 1 228495835 228495835 G A OBSCN Missense_Mutation p.G5121R 0.40 probably_damaging(0.946) TCGA-BF-AAP2-01 1 229772097 229772097 C T URB2 Silent p.L579L 0.34 TCGA-BF-AAP2-01 1 230916028 230916028 G A CAPN9 Silent p.R406R 0.35 TCGA-BF-AAP2-01 1 23234511 23234511 G A EPHB2 Missense_Mutation p.M735I 0.45 deleterious(0) possibly_damaging(0.561) TCGA-BF-AAP2-01 1 232601077 232601077 G A SIPA1L2 Missense_Mutation p.R777W 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 233490615 233490615 C T MLK4 Missense_Mutation p.S390L 0.31 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP2-01 1 233515211 233515211 C T MLK4 Missense_Mutation p.P820L 0.28 tolerated(1) benign(0.001) TCGA-BF-AAP2-01 1 235969079 235969079 A G LYST Silent p.T1119T 0.35 TCGA-BF-AAP2-01 1 235971908 235971908 G A LYST Missense_Mutation p.P737L 0.37 deleterious(0.01) benign(0.004) TCGA-BF-AAP2-01 1 23689081 23689081 A T ZNF436 Missense_Mutation p.L265Q 0.40 deleterious(0) probably_damaging(0.983) TCGA-BF-AAP2-01 1 240071997 240071997 G A CHRM3 Missense_Mutation p.D416N 0.44 tolerated(0.68) benign(0.067) TCGA-BF-AAP2-01 1 240370387 240370387 C T FMN2 Missense_Mutation p.P759S 0.13 unknown(0) TCGA-BF-AAP2-01 1 240990469 240990469 C T RGS7 Missense_Mutation p.G205R 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 1 241094061 241094061 T A RGS7 Missense_Mutation p.Y114F 0.13 tolerated(0.09) probably_damaging(0.979) TCGA-BF-AAP2-01 1 24507324 24507324 G A IFNLR1 Missense_Mutation p.P27S 0.50 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 245704199 245704199 C T KIF26B Missense_Mutation p.P433S 0.13 deleterious(0) unknown(0) TCGA-BF-AAP2-01 1 247587858 247587858 G A NLRP3 Silent p.L371L 0.10 TCGA-BF-AAP2-01 1 248059035 248059035 C T OR2W3 Silent p.S49S 0.38 TCGA-BF-AAP2-01 1 248059200 248059200 C T OR2W3 Silent p.F104F 0.39 TCGA-BF-AAP2-01 1 248084328 248084328 T G OR2T8 Missense_Mutation p.N3K 0.18 tolerated(0.09) benign(0) TCGA-BF-AAP2-01 1 248343326 248343326 C T OR2M2 Silent p.I13I 0.28 TCGA-BF-AAP2-01 1 248436184 248436184 G A OR2T33 Silent p.H311H 0.44 TCGA-BF-AAP2-01 1 248487023 248487023 G A OR2M7 Missense_Mutation p.P283L 0.09 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP2-01 1 248487024 248487024 G A OR2M7 Missense_Mutation p.P283S 0.09 deleterious(0.02) possibly_damaging(0.901) TCGA-BF-AAP2-01 1 248551376 248551376 G A OR2T6 Missense_Mutation p.S156N 0.38 deleterious(0) possibly_damaging(0.756) TCGA-BF-AAP2-01 1 248569645 248569645 C T OR2T1 Missense_Mutation p.S117F 0.06 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 1 248616351 248616351 G A OR2T2 Missense_Mutation p.D85N 0.11 tolerated(0.37) probably_damaging(0.997) TCGA-BF-AAP2-01 1 248737368 248737368 G A OR2T34 Missense_Mutation p.H231Y 0.27 tolerated(1) benign(0.007) TCGA-BF-AAP2-01 1 26317253 26317253 C T PAFAH2 Missense_Mutation p.G19S 0.36 tolerated(0.05) possibly_damaging(0.819) TCGA-BF-AAP2-01 1 26510901 26510901 C T CNKSR1 Missense_Mutation p.S337F 0.35 tolerated(0.38) benign(0.004) TCGA-BF-AAP2-01 1 26514768 26514768 C T CNKSR1 Missense_Mutation p.P500S 0.35 tolerated(0.26) possibly_damaging(0.642) TCGA-BF-AAP2-01 1 28282535 28282535 G A SMPDL3B Missense_Mutation p.G316E 0.44 tolerated(0.09) probably_damaging(0.998) TCGA-BF-AAP2-01 1 29016633 29016633 C T GMEB1 Missense_Mutation p.S59L 0.53 deleterious(0.03) benign(0.148) TCGA-BF-AAP2-01 1 31842241 31842241 C T FABP3 Silent p.R79R 0.39 TCGA-BF-AAP2-01 1 32672233 32672233 A C IQCC Missense_Mutation p.K184Q 0.12 tolerated(0.06) benign(0.367) TCGA-BF-AAP2-01 1 32742266 32742266 C T LCK Silent p.S281S 0.41 TCGA-BF-AAP2-01 1 33988937 33988937 G A CSMD2 Silent p.F3349F 0.32 TCGA-BF-AAP2-01 1 35474424 35474424 G A ZMYM6 Nonsense_Mutation p.R532* 0.40 TCGA-BF-AAP2-01 1 42046017 42046017 G A HIVEP3 Silent p.S1484S 0.28 TCGA-BF-AAP2-01 1 44463304 44463304 G A SLC6A9 Silent p.F678F 0.11 TCGA-BF-AAP2-01 1 45316563 45316563 G A EIF2B3 3'UTR 0.19 TCGA-BF-AAP2-01 1 46073841 46073841 C T NASP Missense_Mutation p.P420S 0.28 deleterious_low_confidence(0.05) benign(0.024) TCGA-BF-AAP2-01 1 46489475 46489475 C A MAST2 Silent p.R535R 0.17 TCGA-BF-AAP2-01 1 47279237 47279237 G A CYP4B1 Missense_Mutation p.M193I 0.19 deleterious(0.01) benign(0.106) TCGA-BF-AAP2-01 1 47284303 47284303 G A CYP4B1 Silent p.R452R 0.32 TCGA-BF-AAP2-01 1 47583620 47583620 C T CYP4Z1 3'UTR 0.33 TCGA-BF-AAP2-01 1 47685736 47685736 G A TAL1 Missense_Mutation p.P218S 0.41 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 1 4772188 4772188 G A AJAP1 Silent p.V86V 0.33 TCGA-BF-AAP2-01 1 48697249 48697249 C G SLC5A9 Missense_Mutation p.L240V 0.07 tolerated(0.16) possibly_damaging(0.732) TCGA-BF-AAP2-01 1 50666809 50666809 T C ELAVL4 Silent p.L371L 0.54 TCGA-BF-AAP2-01 1 53972244 53972244 G A GLIS1 3'UTR 0.42 TCGA-BF-AAP2-01 1 54670738 54670738 C T MRPL37 Missense_Mutation p.L132F 0.44 tolerated(0.06) possibly_damaging(0.904) TCGA-BF-AAP2-01 1 55224184 55224184 C T PARS2 Silent p.E217E 0.32 TCGA-BF-AAP2-01 1 55253466 55253466 C T TTC22 Silent p.E219E 0.67 TCGA-BF-AAP2-01 1 57224415 57224415 C T C1orf168 Missense_Mutation p.E358K 0.38 deleterious(0.05) possibly_damaging(0.548) TCGA-BF-AAP2-01 1 57476883 57476883 G A DAB1 Missense_Mutation p.P503S 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-BF-AAP2-01 1 60505664 60505664 C T C1orf87 Silent p.K224K 0.41 TCGA-BF-AAP2-01 1 70518742 70518742 G A LRRC7 Missense_Mutation p.G1344R 0.45 deleterious(0.02) possibly_damaging(0.787) TCGA-BF-AAP2-01 1 71873014 71873014 C T NEGR1 3'UTR 0.24 TCGA-BF-AAP2-01 1 74663969 74663969 G T FPGT-TNNI3K Missense_Mutation p.A16S 0.41 tolerated_low_confidence(0.07) benign(0.001) TCGA-BF-AAP2-01 1 77515951 77515951 C T ST6GALNAC5 Missense_Mutation p.S227F 0.40 probably_damaging(0.995) TCGA-BF-AAP2-01 1 77515952 77515952 C T ST6GALNAC5 Silent p.S227S 0.41 TCGA-BF-AAP2-01 1 82446512 82446512 G A LPHN2 Intron 0.38 TCGA-BF-AAP2-01 1 82446513 82446513 G C LPHN2 Intron 0.38 TCGA-BF-AAP2-01 1 8415052 8415052 T C RERE 3'UTR 0.38 TCGA-BF-AAP2-01 1 89522810 89522810 C T GBP1 Silent p.E294E 0.33 TCGA-BF-AAP2-01 1 89615147 89615147 A G GBP7 Missense_Mutation p.V327A 0.46 deleterious(0) probably_damaging(0.944) TCGA-BF-AAP2-01 1 89729482 89729482 G A GBP5 Silent p.L433L 0.35 TCGA-BF-AAP2-01 1 94466646 94466646 C T ABCA4 Missense_Mutation p.G2100R 0.22 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 1 94471025 94471025 C T ABCA4 Missense_Mutation p.R2040Q 0.38 deleterious(0) probably_damaging(0.934) TCGA-BF-AAP2-01 1 94496623 94496623 G A ABCA4 Silent p.I1394I 0.43 TCGA-BF-AAP2-01 1 94670745 94670745 G A ARHGAP29 Missense_Mutation p.S190F 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-BF-AAP2-01 1 94674821 94674821 G A ARHGAP29 Silent p.T142T 0.34 TCGA-BF-AAP2-01 1 9809668 9809668 C A CLSTN1 Missense_Mutation p.G279V 0.51 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 1 98157333 98157333 G A DPYD Silent p.F234F 0.47 TCGA-BF-AAP2-01 20 10393194 10393194 G A MKKS Silent p.P323P 0.29 TCGA-BF-AAP2-01 20 2097932 2097932 C T STK35 Missense_Mutation p.L505F 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 20 23065051 23065051 G A CD93 Silent p.I593I 0.44 TCGA-BF-AAP2-01 20 23473670 23473670 G A CST8 Missense_Mutation p.E103K 0.32 deleterious(0.05) possibly_damaging(0.457) TCGA-BF-AAP2-01 20 2593993 2593993 C T TMC2 Intron 0.50 TCGA-BF-AAP2-01 20 29623158 29623158 G A FRG1B 5'UTR 0.07 TCGA-BF-AAP2-01 20 29960797 29960797 C T DEFB118 Missense_Mutation p.P66S 0.38 tolerated(0.18) possibly_damaging(0.857) TCGA-BF-AAP2-01 20 30409531 30409531 C T MYLK2 Nonsense_Mutation p.Q255* 0.12 TCGA-BF-AAP2-01 20 32868819 32868819 G A AHCY 3'UTR 0.53 TCGA-BF-AAP2-01 20 33862171 33862171 G A MMP24 Nonsense_Mutation p.W566* 0.14 TCGA-BF-AAP2-01 20 34807716 34807716 G A EPB41L1 Missense_Mutation p.G797S 0.41 tolerated(0.59) benign(0.028) TCGA-BF-AAP2-01 20 35061004 35061004 C T DLGAP4 Missense_Mutation p.S295F 0.50 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 20 3678724 3678724 C T SIGLEC1 Missense_Mutation p.G615R 0.64 tolerated_low_confidence(0.13) benign(0.365) TCGA-BF-AAP2-01 20 3721495 3721495 C T HSPA12B Missense_Mutation p.P26L 0.18 tolerated_low_confidence(0.58) benign(0.258) TCGA-BF-AAP2-01 20 37353686 37353686 G A SLC32A1 Missense_Mutation p.E107K 0.40 deleterious(0.04) benign(0.007) TCGA-BF-AAP2-01 20 3740766 3740766 G A C20orf27 5'UTR 0.38 TCGA-BF-AAP2-01 20 39316645 39316645 C T MAFB Silent p.Q282Q 0.28 TCGA-BF-AAP2-01 20 42162658 42162658 C T L3MBTL1 Silent p.D486D 0.06 TCGA-BF-AAP2-01 20 42788307 42788307 G A JPH2 Nonsense_Mutation p.Q374* 0.38 TCGA-BF-AAP2-01 20 42825888 42825888 G A OSER1 Missense_Mutation p.P228L 0.36 tolerated(0.08) benign(0.295) TCGA-BF-AAP2-01 20 43726540 43726540 G A KCNS1 Silent p.L291L 0.50 TCGA-BF-AAP2-01 20 43752448 43752448 C T WFDC12 3'UTR 0.47 TCGA-BF-AAP2-01 20 44664116 44664116 G A SLC12A5 Missense_Mutation p.G97E 0.40 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 20 44984496 44984496 G A SLC35C2 Missense_Mutation p.S118F 0.39 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP2-01 20 45130662 45130662 C T ZNF334 Missense_Mutation p.G439E 0.37 deleterious(0.01) possibly_damaging(0.632) TCGA-BF-AAP2-01 20 45188756 45188756 G A SLC13A3 Nonsense_Mutation p.Q572* 0.46 TCGA-BF-AAP2-01 20 45717935 45717935 G A EYA2 Missense_Mutation p.R240K 0.31 tolerated(0.1) probably_damaging(0.995) TCGA-BF-AAP2-01 20 47990833 47990833 C T KCNB1 Missense_Mutation p.E422K 0.11 tolerated(0.11) probably_damaging(0.997) TCGA-BF-AAP2-01 20 47990834 47990834 C T KCNB1 Silent p.K421K 0.11 TCGA-BF-AAP2-01 20 47991230 47991230 G A KCNB1 Silent p.F289F 0.17 TCGA-BF-AAP2-01 20 50407498 50407498 C T SALL4 Silent p.Q508Q 0.19 TCGA-BF-AAP2-01 20 51870486 51870486 G A TSHZ2 Silent p.K163K 0.14 TCGA-BF-AAP2-01 20 51872961 51872961 G A TSHZ2 Silent p.E988E 0.18 TCGA-BF-AAP2-01 20 5294809 5294809 G A PROKR2 Silent p.I69I 0.40 TCGA-BF-AAP2-01 20 55777664 55777664 G A BMP7 Silent p.F209F 0.45 TCGA-BF-AAP2-01 20 56139430 56139430 G A PCK1 Silent p.K389K 0.46 TCGA-BF-AAP2-01 20 56191400 56191400 T A ZBP1 Missense_Mutation p.K53N 0.42 deleterious(0.04) benign(0.132) TCGA-BF-AAP2-01 20 60737919 60737919 C T SS18L1 Missense_Mutation p.P163L 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.889) TCGA-BF-AAP2-01 20 61467640 61467640 G A COL9A3 Silent p.Q501Q 0.22 TCGA-BF-AAP2-01 20 61510911 61510911 G A DIDO1 Missense_Mutation p.R2133W 0.60 possibly_damaging(0.893) TCGA-BF-AAP2-01 20 61510912 61510912 G A DIDO1 Silent p.P2132P 0.58 TCGA-BF-AAP2-01 20 62366643 62366643 C T ZGPAT Missense_Mutation p.P395L 0.19 tolerated(0.23) benign(0.049) TCGA-BF-AAP2-01 20 62366644 62366644 C T ZGPAT Silent p.P395P 0.20 TCGA-BF-AAP2-01 20 6758923 6758923 G A BMP2 Silent p.G126G 0.33 TCGA-BF-AAP2-01 20 6759483 6759483 G A BMP2 Nonsense_Mutation p.W313* 0.20 TCGA-BF-AAP2-01 20 9525065 9525065 G A PAK7 Missense_Mutation p.P607L 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 20 9546652 9546652 T A PAK7 Missense_Mutation p.E457V 0.44 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP2-01 20 9546725 9546725 G A PAK7 Missense_Mutation p.R433W 0.42 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP2-01 21 31538540 31538540 G A CLDN17 Silent p.F132F 0.52 TCGA-BF-AAP2-01 21 33370865 33370865 C T HUNK Missense_Mutation p.R505C 0.15 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-BF-AAP2-01 21 37617687 37617687 G A DOPEY2 Missense_Mutation p.E1137K 0.88 deleterious(0.02) benign(0.22) TCGA-BF-AAP2-01 21 39087043 39087043 G A KCNJ6 Silent p.F139F 0.82 TCGA-BF-AAP2-01 21 39087348 39087348 C T KCNJ6 Missense_Mutation p.D38N 0.78 tolerated(0.16) benign(0.038) TCGA-BF-AAP2-01 21 39672352 39672352 C T KCNJ15 3'UTR 0.61 TCGA-BF-AAP2-01 21 43810121 43810121 G A TMPRSS3 Silent p.I40I 0.89 TCGA-BF-AAP2-01 21 45861741 45861741 C T TRPM2 3'UTR 0.78 TCGA-BF-AAP2-01 22 16256542 16256542 C T POTEH 3'UTR 0.21 TCGA-BF-AAP2-01 22 16449674 16449674 G A OR11H1 Missense_Mutation p.S44L 0.23 tolerated(0.86) benign(0.001) TCGA-BF-AAP2-01 22 17288920 17288920 C T XKR3 Missense_Mutation p.G15E 0.42 tolerated(1) probably_damaging(0.972) TCGA-BF-AAP2-01 22 17308541 17308541 C T HSFY1P1 RNA 0.45 TCGA-BF-AAP2-01 22 18650683 18650683 G A USP18 Silent p.T169T 0.54 TCGA-BF-AAP2-01 22 19026589 19026589 C T DGCR2 Missense_Mutation p.G481E 0.42 tolerated_low_confidence(0.09) benign(0.014) TCGA-BF-AAP2-01 22 19127141 19127141 G A DGCR14 Silent p.L224L 0.35 TCGA-BF-AAP2-01 22 21329983 21329983 C T AIFM3 Silent p.S241S 0.42 TCGA-BF-AAP2-01 22 21331049 21331049 C T AIFM3 Silent p.L380L 0.43 TCGA-BF-AAP2-01 22 21800689 21800689 C T HIC2 Missense_Mutation p.P502L 0.36 tolerated(0.53) benign(0.044) TCGA-BF-AAP2-01 22 22318548 22318548 G A TOP3B Silent p.P361P 0.51 TCGA-BF-AAP2-01 22 22869350 22869350 G A ZNF280A Missense_Mutation p.S202F 0.10 deleterious(0.02) benign(0.356) TCGA-BF-AAP2-01 22 22930962 22930962 C T IGLV2-33 Missense_Mutation p.H53Y 0.15 tolerated_low_confidence(1) benign(0) TCGA-BF-AAP2-01 22 22989271 22989271 A G GGTLC2 Missense_Mutation p.D75G 0.06 tolerated(0.09) benign(0.108) TCGA-BF-AAP2-01 22 23223458 23223458 C T IGLV3-1 Silent p.I76I 0.07 TCGA-BF-AAP2-01 22 24573545 24573545 C T CABIN1 Silent p.S2093S 0.34 TCGA-BF-AAP2-01 22 24584078 24584078 C T SUSD2 Silent p.S772S 0.48 TCGA-BF-AAP2-01 22 24730534 24730534 A T SPECC1L Silent p.A851A 0.32 TCGA-BF-AAP2-01 22 25024107 25024107 C T GGT1 Missense_Mutation p.R466W 0.11 deleterious(0) possibly_damaging(0.849) TCGA-BF-AAP2-01 22 26422874 26422874 G A MYO18B Missense_Mutation p.E2312K 0.28 tolerated(0.14) benign(0.019) TCGA-BF-AAP2-01 22 26423000 26423000 C T MYO18B Missense_Mutation p.L2354F 0.16 deleterious(0) probably_damaging(0.957) TCGA-BF-AAP2-01 22 26776282 26776282 G A SEZ6L 3'UTR 0.34 TCGA-BF-AAP2-01 22 27012195 27012195 C T CRYBB1 Missense_Mutation p.G30E 0.44 tolerated(0.09) possibly_damaging(0.784) TCGA-BF-AAP2-01 22 27021491 27021491 C T CRYBA4 Silent p.L69L 0.39 TCGA-BF-AAP2-01 22 29884941 29884941 G A NEFH Missense_Mutation p.V438M 0.16 deleterious(0.01) unknown(0) TCGA-BF-AAP2-01 22 30051592 30051592 C T NF2 Silent p.L176L 0.33 TCGA-BF-AAP2-01 22 35481693 35481693 G A ISX 3'UTR 0.34 TCGA-BF-AAP2-01 22 37098568 37098568 G A CACNG2 Silent p.F18F 0.47 TCGA-BF-AAP2-01 22 37334144 37334144 G A CSF2RB Missense_Mutation p.G765D 0.29 tolerated(0.29) benign(0.047) TCGA-BF-AAP2-01 22 37420852 37420852 G A MPST Splice_Site p.X219_splice 0.33 TCGA-BF-AAP2-01 22 37770113 37770113 C T ELFN2 Missense_Mutation p.E488K 0.40 tolerated(0.15) benign(0.045) TCGA-BF-AAP2-01 22 38897255 38897255 G A DDX17 Silent p.P106P 0.59 TCGA-BF-AAP2-01 22 41166829 41166829 G A SLC25A17 3'UTR 0.38 TCGA-BF-AAP2-01 22 42523977 42523977 C T CYP2D6 Silent p.G284G 0.28 TCGA-BF-AAP2-01 22 42523978 42523978 C T CYP2D6 Missense_Mutation p.G284E 0.29 tolerated(0.31) benign(0.056) TCGA-BF-AAP2-01 22 46654704 46654704 G A PKDREJ Missense_Mutation p.P1506S 0.30 tolerated(0.23) benign(0.01) TCGA-BF-AAP2-01 22 46776797 46776797 C T CELSR1 Missense_Mutation p.E2382K 0.52 tolerated(0.11) possibly_damaging(0.743) TCGA-BF-AAP2-01 22 50719618 50719618 C T PLXNB2 Nonsense_Mutation p.W1221* 0.19 TCGA-BF-AAP2-01 22 50927571 50927571 C T MIOX Nonsense_Mutation p.R171* 0.54 TCGA-BF-AAP2-01 22 50988356 50988356 G A KLHDC7B Silent p.E587E 0.36 TCGA-BF-AAP2-01 2 101650217 101650217 G T TBC1D8 Missense_Mutation p.A521E 0.30 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 2 101650218 101650218 C T TBC1D8 Missense_Mutation p.A521T 0.30 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 2 102000007 102000007 C T CREG2 Missense_Mutation p.G200E 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-BF-AAP2-01 2 102849574 102849574 C T IL1RL2 Silent p.F429F 0.26 TCGA-BF-AAP2-01 2 102851491 102851491 C T IL1RL2 Nonsense_Mutation p.Q478* 0.40 TCGA-BF-AAP2-01 2 102959600 102959600 G A IL1RL1 Missense_Mutation p.E263K 0.42 tolerated(0.66) benign(0.081) TCGA-BF-AAP2-01 2 102959740 102959740 G A IL1RL1 Missense_Mutation p.G279R 0.37 tolerated(0.28) benign(0.222) TCGA-BF-AAP2-01 2 103148998 103148998 C A SLC9A4 Missense_Mutation p.L750M 0.38 tolerated(0.22) possibly_damaging(0.549) TCGA-BF-AAP2-01 2 11052900 11052900 G A KCNF1 Nonsense_Mutation p.W116* 0.14 TCGA-BF-AAP2-01 2 111851162 111851162 C T ACOXL Intron 0.42 TCGA-BF-AAP2-01 2 112536341 112536341 C T ANAPC1 Missense_Mutation p.E1766K 0.31 deleterious(0.04) benign(0.2) TCGA-BF-AAP2-01 2 112592342 112592350 CTCATCCTT - ANAPC1 In_Frame_Del p.K739_E741del 0.22 TCGA-BF-AAP2-01 2 113780238 113780238 C T IL36B 3'UTR 0.61 TCGA-BF-AAP2-01 2 11756780 11756780 C T GREB1 Missense_Mutation p.P1116S 0.35 tolerated(0.32) probably_damaging(0.999) TCGA-BF-AAP2-01 2 125232406 125232406 G A CNTNAP5 Missense_Mutation p.G337R 0.22 deleterious(0.01) probably_damaging(0.919) TCGA-BF-AAP2-01 2 125547484 125547484 A G CNTNAP5 Missense_Mutation p.T919A 0.35 tolerated(0.13) benign(0.068) TCGA-BF-AAP2-01 2 128341748 128341748 T G MYO7B Missense_Mutation p.F465L 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-BF-AAP2-01 2 130877719 130877719 C T POTEF Missense_Mutation p.D124N 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-AAP2-01 2 131520161 131520161 G A AMER3 Silent p.E172E 0.48 TCGA-BF-AAP2-01 2 131521575 131521575 G A AMER3 Missense_Mutation p.E644K 0.42 tolerated(0.18) benign(0.11) TCGA-BF-AAP2-01 2 131704127 131704127 C T ARHGEF4 Missense_Mutation p.P116S 0.37 tolerated_low_confidence(0.19) benign(0.001) TCGA-BF-AAP2-01 2 136569989 136569989 G A LCT Missense_Mutation p.P749S 0.47 deleterious(0.01) probably_damaging(0.99) TCGA-BF-AAP2-01 2 136873183 136873183 C T CXCR4 Silent p.G109G 0.40 TCGA-BF-AAP2-01 2 136873369 136873369 G A CXCR4 Silent p.T47T 0.38 TCGA-BF-AAP2-01 2 137814011 137814011 G A THSD7B Missense_Mutation p.G54E 0.21 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP2-01 2 143643042 143643042 G A KYNU Missense_Mutation p.E36K 0.27 tolerated(0.68) benign(0.001) TCGA-BF-AAP2-01 2 143743555 143743555 C T KYNU Silent p.F289F 0.42 TCGA-BF-AAP2-01 2 150327393 150327393 G A LYPD6 3'UTR 0.41 TCGA-BF-AAP2-01 2 152222637 152222637 G A TNFAIP6 Silent p.G100G 0.24 TCGA-BF-AAP2-01 2 152349898 152349898 C T NEB Missense_Mutation p.R8245K 0.30 probably_damaging(0.992) TCGA-BF-AAP2-01 2 152500538 152500538 G A NEB Nonsense_Mutation p.Q2584* 0.42 TCGA-BF-AAP2-01 2 158977933 158977933 G A UPP2 Missense_Mutation p.G213E 0.14 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 2 159170349 159170349 G A CCDC148 Silent p.Y274Y 0.22 TCGA-BF-AAP2-01 2 159481681 159481681 C T PKP4 Missense_Mutation p.P299S 0.21 tolerated(0.26) benign(0.013) TCGA-BF-AAP2-01 2 159672461 159672461 C T DAPL1 3'UTR 0.20 TCGA-BF-AAP2-01 2 163241359 163241359 G A KCNH7 Missense_Mutation p.S934F 0.35 deleterious(0.04) benign(0.008) TCGA-BF-AAP2-01 2 163374667 163374667 C T KCNH7 Silent p.R155R 0.57 TCGA-BF-AAP2-01 2 166165719 166165719 G A SCN2A Missense_Mutation p.R217Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 2 166210777 166210777 G A SCN2A Missense_Mutation p.E999K 0.44 deleterious(0.02) possibly_damaging(0.767) TCGA-BF-AAP2-01 2 166848092 166848092 G A SCN1A Missense_Mutation p.P1898L 0.40 tolerated(0.21) probably_damaging(1) TCGA-BF-AAP2-01 2 167056258 167056258 G A SCN9A Missense_Mutation p.R1620C 0.36 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 2 167056260 167056260 A G SCN9A Missense_Mutation p.I1619T 0.38 deleterious(0) possibly_damaging(0.79) TCGA-BF-AAP2-01 2 168107852 168107852 G A XIRP2 Missense_Mutation p.R3317Q 0.43 benign(0.049) TCGA-BF-AAP2-01 2 169783831 169783831 G A ABCB11 Silent p.F1151F 0.45 TCGA-BF-AAP2-01 2 170139460 170139460 C T LRP2 Missense_Mutation p.R365Q 0.46 benign(0.133) TCGA-BF-AAP2-01 2 173338928 173338928 C T ITGA6 Silent p.F307F 0.44 TCGA-BF-AAP2-01 2 179407834 179407834 C T TTN Missense_Mutation p.R32289K 0.14 TCGA-BF-AAP2-01 2 179416452 179416452 C T TTN Missense_Mutation p.G30392D 0.46 TCGA-BF-AAP2-01 2 179417765 179417765 C T TTN Nonsense_Mutation p.W29954* 0.41 TCGA-BF-AAP2-01 2 179528408 179528408 C T TTN Missense_Mutation p.E12160K 0.40 TCGA-BF-AAP2-01 2 179528617 179528617 G A TTN Missense_Mutation p.S12126F 0.43 TCGA-BF-AAP2-01 2 179587638 179587638 C T TTN Missense_Mutation p.E7330K 0.40 TCGA-BF-AAP2-01 2 179613503 179613503 C T TTN Intron 0.41 TCGA-BF-AAP2-01 2 179613715 179613715 C T TTN Intron 0.38 TCGA-BF-AAP2-01 2 179616245 179616245 C T TTN Intron 0.42 TCGA-BF-AAP2-01 2 179658233 179658233 C T TTN Silent p.K478K 0.25 TCGA-BF-AAP2-01 2 182400396 182400396 G A ITGA4 3'UTR 0.36 TCGA-BF-AAP2-01 2 183624030 183624030 C T DNAJC10 Missense_Mutation p.A714V 0.40 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 2 185801435 185801435 C T ZNF804A Nonsense_Mutation p.Q438* 0.38 TCGA-BF-AAP2-01 2 185802413 185802413 G A ZNF804A Missense_Mutation p.E764K 0.33 deleterious(0.03) benign(0.239) TCGA-BF-AAP2-01 2 186670386 186670386 C T FSIP2 Silent p.S5540S 0.39 TCGA-BF-AAP2-01 2 187703849 187703849 G T ZSWIM2 Silent p.R111R 0.40 TCGA-BF-AAP2-01 2 1893106 1893106 G A MYT1L Silent p.F807F 0.36 TCGA-BF-AAP2-01 2 189904202 189904202 C T COL5A2 Missense_Mutation p.D1241N 0.26 unknown(0) TCGA-BF-AAP2-01 2 189909919 189909919 T G COL5A2 Missense_Mutation p.K1117Q 0.53 unknown(0) TCGA-BF-AAP2-01 2 189909920 189909920 C T COL5A2 Silent p.G1116G 0.53 TCGA-BF-AAP2-01 2 196659228 196659228 C T DNAH7 Missense_Mutation p.R3517Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 2 196786853 196786853 G A DNAH7 Silent p.S1298S 0.56 TCGA-BF-AAP2-01 2 198950526 198950526 C T PLCL1 Missense_Mutation p.S762L 0.41 deleterious(0) benign(0.067) TCGA-BF-AAP2-01 2 204058526 204058526 C T NBEAL1 Silent p.H2281H 0.48 TCGA-BF-AAP2-01 2 205983712 205983712 G A PARD3B Missense_Mutation p.E250K 0.38 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 2 208993172 208993172 C T CRYGC Missense_Mutation p.E94K 0.44 deleterious(0) possibly_damaging(0.898) TCGA-BF-AAP2-01 2 209302574 209302574 C T PTH2R Missense_Mutation p.R127C 0.40 deleterious(0.02) probably_damaging(0.912) TCGA-BF-AAP2-01 2 210558726 210558726 C T MAP2 Missense_Mutation p.P611L 0.33 tolerated_low_confidence(0.41) possibly_damaging(0.474) TCGA-BF-AAP2-01 2 21230936 21230936 C T APOB Missense_Mutation p.R2935K 0.12 benign(0) TCGA-BF-AAP2-01 2 219854978 219854978 T C CRYBA2 Missense_Mutation p.H197R 0.33 deleterious(0.01) benign(0.282) TCGA-BF-AAP2-01 2 222294779 222294779 C T EPHA4 Silent p.K863K 0.43 TCGA-BF-AAP2-01 2 222301175 222301175 C T EPHA4 Missense_Mutation p.D764N 0.31 deleterious(0.02) probably_damaging(0.957) TCGA-BF-AAP2-01 2 222429073 222429073 G A EPHA4 Silent p.I67I 0.41 TCGA-BF-AAP2-01 2 224462686 224462686 G A SCG2 Missense_Mutation p.L439F 0.33 deleterious(0.01) possibly_damaging(0.895) TCGA-BF-AAP2-01 2 224642456 224642456 C T AP1S3 Missense_Mutation p.R45K 0.39 tolerated(1) benign(0.003) TCGA-BF-AAP2-01 2 227871831 227871831 C T COL4A4 3'UTR 0.52 TCGA-BF-AAP2-01 2 228886454 228886454 C T SPHKAP Missense_Mutation p.E224K 0.39 deleterious(0.01) possibly_damaging(0.881) TCGA-BF-AAP2-01 2 229046356 229046356 G A SPHKAP 5'UTR 0.42 TCGA-BF-AAP2-01 2 230910975 230910975 G A SLC16A14 Silent p.L289L 0.27 TCGA-BF-AAP2-01 2 231775067 231775067 C T GPR55 Missense_Mutation p.S204N 0.41 tolerated(0.26) benign(0.14) TCGA-BF-AAP2-01 2 233321390 233321390 C T ALPI Silent p.Y95Y 0.38 TCGA-BF-AAP2-01 2 233321391 233321391 C T ALPI Silent p.L96L 0.38 TCGA-BF-AAP2-01 2 233409203 233409203 G A CHRNG Missense_Mutation p.E388K 0.22 deleterious(0) possibly_damaging(0.788) TCGA-BF-AAP2-01 2 233748069 233748069 T G NGEF Missense_Mutation p.E570A 0.22 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 2 233784996 233784996 C T NGEF Missense_Mutation p.E276K 0.27 deleterious(0.01) possibly_damaging(0.751) TCGA-BF-AAP2-01 2 233835023 233835023 C T NGEF Missense_Mutation p.G95E 0.28 tolerated_low_confidence(0.2) benign(0.005) TCGA-BF-AAP2-01 2 234183424 234183424 C T ATG16L1 Silent p.F318F 0.20 TCGA-BF-AAP2-01 2 234628291 234628291 C T UGT1A4 Silent p.F275F 0.40 TCGA-BF-AAP2-01 2 234890490 234890490 T G TRPM8 Silent p.T840T 0.42 TCGA-BF-AAP2-01 2 238277457 238277457 C T COL6A3 Missense_Mutation p.G1550E 0.41 probably_damaging(0.998) TCGA-BF-AAP2-01 2 240951045 240951045 G A NDUFA10 Silent p.L246L 0.38 TCGA-BF-AAP2-01 2 240981433 240981433 G A PRR21 Missense_Mutation p.H323Y 0.45 tolerated_low_confidence(0.46) unknown(0) TCGA-BF-AAP2-01 2 242007201 242007201 C T SNED1 Silent p.F1011F 0.42 TCGA-BF-AAP2-01 2 242135125 242135125 C T ANO7 Silent p.F112F 0.25 TCGA-BF-AAP2-01 2 242684287 242684287 T C D2HGDH Missense_Mutation p.F283S 0.35 deleterious(0) probably_damaging(0.953) TCGA-BF-AAP2-01 2 24952583 24952583 C T NCOA1 Missense_Mutation p.P1034S 0.26 tolerated(0.17) benign(0.005) TCGA-BF-AAP2-01 2 27360021 27360021 G A C2orf53 Missense_Mutation p.P393S 0.16 tolerated(0.11) benign(0.178) TCGA-BF-AAP2-01 2 38178696 38178696 C T RMDN2 Missense_Mutation p.S113F 0.36 deleterious_low_confidence(0.02) benign(0.371) TCGA-BF-AAP2-01 2 38804623 38804623 G A HNRNPLL Missense_Mutation p.S280L 0.14 tolerated(0.27) benign(0.43) TCGA-BF-AAP2-01 2 40342472 40342472 G A SLC8A1 Missense_Mutation p.S948F 0.30 tolerated(0.08) benign(0.075) TCGA-BF-AAP2-01 2 40656001 40656001 C T SLC8A1 Missense_Mutation p.E474K 0.11 tolerated(0.15) benign(0.205) TCGA-BF-AAP2-01 2 40656002 40656002 C T SLC8A1 Silent p.K473K 0.11 TCGA-BF-AAP2-01 2 50699534 50699534 A C NRXN1 Missense_Mutation p.F1089C 0.42 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP2-01 2 51254653 51254653 C T NRXN1 Silent p.K253K 0.50 TCGA-BF-AAP2-01 2 51255275 51255275 C T NRXN1 Nonsense_Mutation p.W46* 0.30 TCGA-BF-AAP2-01 2 5833102 5833102 G T SOX11 Silent p.L83L 0.39 TCGA-BF-AAP2-01 2 60687972 60687972 G A BCL11A Missense_Mutation p.S692L 0.27 tolerated(0.06) benign(0.177) TCGA-BF-AAP2-01 2 60688097 60688097 G A BCL11A Silent p.P650P 0.26 TCGA-BF-AAP2-01 2 61566532 61566532 G A USP34 Nonsense_Mutation p.R900* 0.46 TCGA-BF-AAP2-01 2 65540615 65540615 G A SPRED2 3'UTR 0.36 TCGA-BF-AAP2-01 2 68622826 68622826 G A PLEK Missense_Mutation p.E311K 0.36 tolerated(0.14) benign(0.003) TCGA-BF-AAP2-01 2 68873196 68873196 C T PROKR1 Silent p.F81F 0.09 TCGA-BF-AAP2-01 2 69093063 69093063 C T BMP10 Silent p.R325R 0.36 TCGA-BF-AAP2-01 2 71653716 71653716 C T ZNF638 Missense_Mutation p.P1573S 0.12 tolerated(0.37) probably_damaging(0.999) TCGA-BF-AAP2-01 2 72362033 72362033 G A CYP26B1 Missense_Mutation p.R240W 0.20 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 2 74042402 74042402 C T C2orf78 Missense_Mutation p.A351V 0.32 tolerated(0.06) benign(0.011) TCGA-BF-AAP2-01 2 74043880 74043880 C T C2orf78 Nonsense_Mutation p.Q844* 0.34 TCGA-BF-AAP2-01 2 74437088 74437088 G A MTHFD2 Silent p.K194K 0.42 TCGA-BF-AAP2-01 2 75426030 75426030 G A TACR1 Missense_Mutation p.L11F 0.21 tolerated(0.65) benign(0.037) TCGA-BF-AAP2-01 2 75720512 75720512 G A EVA1A Silent p.F103F 0.43 TCGA-BF-AAP2-01 2 79314776 79314776 C T REG1B 5'UTR 0.27 TCGA-BF-AAP2-01 2 80874951 80874951 C T CTNNA2 Missense_Mutation p.S891L 0.13 deleterious(0.03) possibly_damaging(0.537) TCGA-BF-AAP2-01 2 85890474 85890474 C T SFTPB Missense_Mutation p.E345K 0.12 tolerated(0.29) benign(0.01) TCGA-BF-AAP2-01 2 87085342 87085342 G A CD8B Missense_Mutation p.H81Y 0.51 tolerated(1) benign(0.005) TCGA-BF-AAP2-01 2 89246908 89246908 C T IGKV1-5 Missense_Mutation p.G88R 0.42 deleterious(0.05) benign(0.197) TCGA-BF-AAP2-01 2 89399773 89399773 C T IGKV1-16 Missense_Mutation p.G19S 0.46 deleterious(0.05) benign(0.256) TCGA-BF-AAP2-01 2 89399783 89399783 G A IGKV1-16 Silent p.L15L 0.31 TCGA-BF-AAP2-01 2 89416833 89416833 A G IGKV1-17 Silent p.P117P 0.37 TCGA-BF-AAP2-01 2 89417077 89417077 G A IGKV1-17 Missense_Mutation p.S36F 0.40 deleterious(0.01) probably_damaging(0.924) TCGA-BF-AAP2-01 2 89476046 89476046 G A IGKV2-24 Silent p.S42S 0.17 TCGA-BF-AAP2-01 2 95815585 95815585 G A ZNF514 Silent p.F215F 0.42 TCGA-BF-AAP2-01 2 96952059 96952059 G A SNRNP200 Silent p.I1331I 0.43 TCGA-BF-AAP2-01 2 96965091 96965091 G A SNRNP200 Silent p.V235V 0.31 TCGA-BF-AAP2-01 2 97493609 97493609 C T CNNM3 Missense_Mutation p.P554L 0.13 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 3 100287698 100287698 T C TMEM45A Silent p.G207G 0.36 TCGA-BF-AAP2-01 3 105397388 105397388 G A CBLB Missense_Mutation p.P819L 0.44 deleterious_low_confidence(0.02) benign(0.255) TCGA-BF-AAP2-01 3 10861208 10861208 C T SLC6A11 Silent p.F105F 0.39 TCGA-BF-AAP2-01 3 10960056 10960056 C T SLC6A11 Silent p.F346F 0.14 TCGA-BF-AAP2-01 3 11059122 11059122 G A SLC6A1 Silent p.G75G 0.48 TCGA-BF-AAP2-01 3 11067530 11067530 G A SLC6A1 Silent p.G307G 0.40 TCGA-BF-AAP2-01 3 111766661 111766661 G A TMPRSS7 Missense_Mutation p.G143E 0.14 tolerated(0.06) benign(0.139) TCGA-BF-AAP2-01 3 111766662 111766662 G A TMPRSS7 Silent p.G143G 0.12 TCGA-BF-AAP2-01 3 114058190 114058190 C T ZBTB20 Missense_Mutation p.G630R 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 3 119156630 119156630 A T TMEM39A Missense_Mutation p.V299D 0.48 tolerated(0.06) probably_damaging(0.99) TCGA-BF-AAP2-01 3 119156631 119156631 C T TMEM39A Missense_Mutation p.V299I 0.49 tolerated(0.13) probably_damaging(0.947) TCGA-BF-AAP2-01 3 122003771 122003771 G A CASR Silent p.R1000R 0.33 TCGA-BF-AAP2-01 3 122351050 122351050 C T PARP15 Missense_Mutation p.S519F 0.45 tolerated(0.07) benign(0.051) TCGA-BF-AAP2-01 3 125648168 125648168 C T ALG1L 3'UTR 0.73 TCGA-BF-AAP2-01 3 126132954 126132954 C T CCDC37 Missense_Mutation p.P53S 0.43 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 3 12613650 12613650 C T MKRN2 Silent p.P140P 0.25 TCGA-BF-AAP2-01 3 126915880 126915880 C T C3orf56 Missense_Mutation p.P118S 0.35 tolerated(0.19) possibly_damaging(0.803) TCGA-BF-AAP2-01 3 126915881 126915881 C T C3orf56 Missense_Mutation p.P118L 0.35 tolerated(0.23) possibly_damaging(0.859) TCGA-BF-AAP2-01 3 127641907 127641907 G A KBTBD12 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-BF-AAP2-01 3 129198714 129198714 C T IFT122 Silent p.I530I 0.38 TCGA-BF-AAP2-01 3 129303303 129303303 G A PLXND1 Missense_Mutation p.P652S 0.34 tolerated(0.79) benign(0.014) TCGA-BF-AAP2-01 3 131261425 131261425 G A CPNE4 Silent p.F505F 0.22 TCGA-BF-AAP2-01 3 131624187 131624187 C T CPNE4 Missense_Mutation p.G34D 0.36 tolerated(0.12) probably_damaging(0.967) TCGA-BF-AAP2-01 3 132172536 132172536 G A DNAJC13 Missense_Mutation p.E280K 0.16 tolerated(0.07) benign(0.007) TCGA-BF-AAP2-01 3 13432726 13432726 G A NUP210 Missense_Mutation p.S173F 0.50 deleterious(0.03) benign(0.071) TCGA-BF-AAP2-01 3 13546225 13546225 C G HDAC11 3'UTR 0.60 TCGA-BF-AAP2-01 3 138724604 138724604 C T PRR23A Missense_Mutation p.M169I 0.32 tolerated(0.07) benign(0.389) TCGA-BF-AAP2-01 3 138738753 138738753 G A PRR23B Missense_Mutation p.P251S 0.33 tolerated(0.23) benign(0.334) TCGA-BF-AAP2-01 3 142455355 142455355 C T TRPC1 Missense_Mutation p.L103F 0.34 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 3 148459237 148459237 C T AGTR1 Nonsense_Mutation p.R139* 0.40 TCGA-BF-AAP2-01 3 149095312 149095312 C T TM4SF1 Missense_Mutation p.R8Q 0.33 deleterious(0.03) probably_damaging(0.99) TCGA-BF-AAP2-01 3 149220463 149220463 G A TM4SF4 Missense_Mutation p.G198R 0.51 tolerated_low_confidence(0.11) unknown(0) TCGA-BF-AAP2-01 3 149220464 149220464 G A TM4SF4 Missense_Mutation p.G198E 0.52 tolerated_low_confidence(0.37) unknown(0) TCGA-BF-AAP2-01 3 151131001 151131001 C T MED12L Missense_Mutation p.P2037L 0.13 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-BF-AAP2-01 3 151165536 151165536 G A IGSF10 Missense_Mutation p.P745S 0.39 tolerated(0.85) benign(0.148) TCGA-BF-AAP2-01 3 151165537 151165537 G A IGSF10 Silent p.F744F 0.38 TCGA-BF-AAP2-01 3 151166992 151166992 C T IGSF10 Missense_Mutation p.M259I 0.47 tolerated(0.29) benign(0.034) TCGA-BF-AAP2-01 3 15137698 15137698 A G ZFYVE20 5'UTR 0.33 TCGA-BF-AAP2-01 3 154147408 154147408 C T GPR149 5'UTR 0.11 TCGA-BF-AAP2-01 3 160138673 160138673 T C SMC4 Missense_Mutation p.F668S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 3 161146971 161146971 G A RP11-3P17.5 RNA 0.19 TCGA-BF-AAP2-01 3 167023700 167023700 G A ZBBX Missense_Mutation p.P486S 0.48 tolerated(0.46) benign(0.033) TCGA-BF-AAP2-01 3 167159919 167159919 C T SERPINI2 Missense_Mutation p.G399E 0.42 deleterious(0.02) benign(0.175) TCGA-BF-AAP2-01 3 167183300 167183300 G A SERPINI2 Missense_Mutation p.P214S 0.47 deleterious(0.05) probably_damaging(0.914) TCGA-BF-AAP2-01 3 167246938 167246938 G A WDR49 Missense_Mutation p.H418Y 0.44 deleterious(0) probably_damaging(0.921) TCGA-BF-AAP2-01 3 168840479 168840479 C T MECOM Silent p.R165R 0.09 TCGA-BF-AAP2-01 3 169664489 169664489 C T RP11-379K17.4 RNA 0.28 TCGA-BF-AAP2-01 3 170219022 170219022 C T SLC7A14 Silent p.L139L 0.10 TCGA-BF-AAP2-01 3 17052628 17052628 G A PLCL2 Missense_Mutation p.G471E 0.43 tolerated(0.45) benign(0.104) TCGA-BF-AAP2-01 3 180334423 180334423 C T CCDC39 Missense_Mutation p.E823K 0.13 deleterious(0.02) possibly_damaging(0.891) TCGA-BF-AAP2-01 3 180372592 180372592 T G CCDC39 Silent p.A296A 0.29 TCGA-BF-AAP2-01 3 184039708 184039708 C T EIF4G1 Missense_Mutation p.P453S 0.39 tolerated(0.22) benign(0.001) TCGA-BF-AAP2-01 3 186395101 186395101 G A HRG Missense_Mutation p.G336E 0.56 tolerated(1) benign(0.011) TCGA-BF-AAP2-01 3 186435283 186435283 G A KNG1 5'UTR 0.14 TCGA-BF-AAP2-01 3 186450291 186450291 G A KNG1 Missense_Mutation p.G253E 0.38 tolerated(0.19) benign(0.019) TCGA-BF-AAP2-01 3 189526120 189526120 C T TP63 Silent p.S128S 0.36 TCGA-BF-AAP2-01 3 189587175 189587175 G A TP63 Missense_Mutation p.D398N 0.52 deleterious(0) possibly_damaging(0.493) TCGA-BF-AAP2-01 3 189700864 189700864 G A LEPREL1 Missense_Mutation p.S432L 0.35 tolerated(0.1) benign(0.002) TCGA-BF-AAP2-01 3 189711939 189711939 C T LEPREL1 Missense_Mutation p.R256K 0.21 tolerated(0.53) benign(0.009) TCGA-BF-AAP2-01 3 193029731 193029731 C T ATP13A5 Splice_Site p.X774_splice 0.34 TCGA-BF-AAP2-01 3 193051605 193051605 G A ATP13A5 Silent p.I402I 0.33 TCGA-BF-AAP2-01 3 194371844 194371844 C T LSG1 Silent p.Q425Q 0.07 TCGA-BF-AAP2-01 3 195501161 195501161 G A MUC4 Missense_Mutation p.P4320L 0.37 benign(0.177) TCGA-BF-AAP2-01 3 195605425 195605425 G A TNK2 Silent p.P414P 0.10 TCGA-BF-AAP2-01 3 197751565 197751565 C T LMLN Missense_Mutation p.P558L 0.41 deleterious(0.04) benign(0.059) TCGA-BF-AAP2-01 3 33110404 33110404 G A GLB1 Missense_Mutation p.H102Y 0.36 tolerated(0.09) benign(0.02) TCGA-BF-AAP2-01 3 36545914 36545914 G A STAC Missense_Mutation p.D266N 0.41 tolerated(0.25) benign(0.006) TCGA-BF-AAP2-01 3 36780201 36780201 C T DCLK3 5'UTR 0.33 TCGA-BF-AAP2-01 3 36874521 36874521 C T TRANK1 Missense_Mutation p.G2141R 0.35 tolerated(0.31) benign(0.003) TCGA-BF-AAP2-01 3 36897994 36897994 G A TRANK1 Silent p.I1029I 0.48 TCGA-BF-AAP2-01 3 38592016 38592016 G A SCN5A Silent p.A1949A 0.67 TCGA-BF-AAP2-01 3 38738864 38738864 C T SCN10A Missense_Mutation p.M1949I 0.31 tolerated_low_confidence(0.11) benign(0) TCGA-BF-AAP2-01 3 38798309 38798309 G A SCN10A Silent p.F382F 0.46 TCGA-BF-AAP2-01 3 38938477 38938477 G A SCN11A Silent p.F754F 0.43 TCGA-BF-AAP2-01 3 39227919 39227919 C T XIRP1 Silent p.G1006G 0.19 TCGA-BF-AAP2-01 3 39229264 39229264 G A XIRP1 Missense_Mutation p.P558L 0.08 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 3 42728181 42728181 G A KLHL40 Silent p.K357K 0.33 TCGA-BF-AAP2-01 3 44488664 44488664 G A ZNF445 Silent p.I833I 0.41 TCGA-BF-AAP2-01 3 46541996 46541996 G A RTP3 Silent p.E102E 0.51 TCGA-BF-AAP2-01 3 4718362 4718362 A T ITPR1 Silent p.G933G 0.36 TCGA-BF-AAP2-01 3 47632267 47632267 G A SMARCC1 Missense_Mutation p.P1035L 0.30 deleterious(0) unknown(0) TCGA-BF-AAP2-01 3 48698286 48698286 G A CELSR3 Silent p.A594A 0.17 TCGA-BF-AAP2-01 3 48921486 48921486 G A SLC25A20 Silent p.F90F 0.25 TCGA-BF-AAP2-01 3 49043158 49043158 C T P4HTM Missense_Mutation p.P402L 0.35 tolerated(0.33) possibly_damaging(0.851) TCGA-BF-AAP2-01 3 5025348 5025348 C T BHLHE40 Missense_Mutation p.P404S 0.24 tolerated_low_confidence(0.14) benign(0.027) TCGA-BF-AAP2-01 3 51394428 51394428 G A DOCK3 Silent p.V1513V 0.50 TCGA-BF-AAP2-01 3 51430338 51430338 C T RBM15B Missense_Mutation p.P503L 0.10 tolerated(0.09) benign(0.029) TCGA-BF-AAP2-01 3 52383403 52383403 C T DNAH1 Silent p.I831I 0.12 TCGA-BF-AAP2-01 3 52472959 52472959 C T SEMA3G Missense_Mutation p.E496K 0.12 deleterious(0.02) benign(0.228) TCGA-BF-AAP2-01 3 52476771 52476771 G A SEMA3G Missense_Mutation p.P90S 0.14 tolerated(0.46) benign(0.021) TCGA-BF-AAP2-01 3 52825953 52825953 C T ITIH1 3'UTR 0.41 TCGA-BF-AAP2-01 3 53381571 53381571 G A DCP1A 5'UTR 0.15 TCGA-BF-AAP2-01 3 54661851 54661851 G A CACNA2D3 Missense_Mutation p.G334E 0.53 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 3 54952512 54952512 C T LRTM1 Missense_Mutation p.E338K 0.42 deleterious(0.04) benign(0.096) TCGA-BF-AAP2-01 3 54958716 54958716 C T LRTM1 Silent p.K178K 0.25 TCGA-BF-AAP2-01 3 56468541 56468541 C T ERC2 Silent p.R165R 0.35 TCGA-BF-AAP2-01 3 58852304 58852304 G A C3orf67 Missense_Mutation p.P291S 0.28 tolerated(0.14) benign(0.121) TCGA-BF-AAP2-01 3 62518605 62518605 G A CADPS Silent p.I744I 0.35 TCGA-BF-AAP2-01 3 64601763 64601763 C T ADAMTS9 Missense_Mutation p.S966N 0.16 tolerated(0.11) benign(0.005) TCGA-BF-AAP2-01 3 66413289 66413289 C T SLC25A26 Silent p.L168L 0.75 TCGA-BF-AAP2-01 3 6903105 6903105 C T GRM7 Silent p.V10V 0.30 TCGA-BF-AAP2-01 3 73113219 73113219 C T PPP4R2 Missense_Mutation p.P187L 0.47 deleterious(0) possibly_damaging(0.872) TCGA-BF-AAP2-01 3 73433290 73433290 G A PDZRN3 Silent p.L809L 0.09 TCGA-BF-AAP2-01 3 81586139 81586139 G A GBE1 Missense_Mutation p.R576C 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 3 87018225 87018225 C T VGLL3 Nonsense_Mutation p.W151* 0.40 TCGA-BF-AAP2-01 3 95374332 95374332 G A MTHFD2P1 RNA 0.38 TCGA-BF-AAP2-01 3 97251245 97251245 G A EPHA6 Silent p.G748G 0.43 TCGA-BF-AAP2-01 3 98109914 98109914 G A OR5K3 Missense_Mutation p.M135I 0.39 tolerated(0.83) benign(0.001) TCGA-BF-AAP2-01 4 100205686 100205686 G A ADH1A Missense_Mutation p.T146I 0.33 deleterious(0) probably_damaging(0.916) TCGA-BF-AAP2-01 4 100542259 100542259 C G MTTP Missense_Mutation p.S795C 0.25 tolerated(0.19) benign(0.014) TCGA-BF-AAP2-01 4 100542260 100542260 T A MTTP Silent p.S795S 0.24 TCGA-BF-AAP2-01 4 101961678 101961678 C T PPP3CA Missense_Mutation p.R401Q 0.40 deleterious(0.03) benign(0.31) TCGA-BF-AAP2-01 4 106755744 106755744 C T GSTCD Missense_Mutation p.P553S 0.26 deleterious(0) possibly_damaging(0.804) TCGA-BF-AAP2-01 4 108615112 108615112 G A PAPSS1 Silent p.L76L 0.08 TCGA-BF-AAP2-01 4 115773965 115773965 C T NDST4 Missense_Mutation p.D578N 0.42 tolerated(0.06) probably_damaging(0.971) TCGA-BF-AAP2-01 4 115997890 115997890 G A NDST4 Silent p.S101S 0.43 TCGA-BF-AAP2-01 4 115997891 115997891 G A NDST4 Missense_Mutation p.S101F 0.43 tolerated(0.13) probably_damaging(0.993) TCGA-BF-AAP2-01 4 119951254 119951254 G A SYNPO2 Missense_Mutation p.E442K 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-BF-AAP2-01 4 120160995 120160995 C T USP53 Silent p.A27A 0.38 TCGA-BF-AAP2-01 4 126373406 126373406 G A FAT4 Silent p.G3745G 0.43 TCGA-BF-AAP2-01 4 13606341 13606341 G A BOD1L1 Missense_Mutation p.P728L 0.27 benign(0.025) TCGA-BF-AAP2-01 4 138442718 138442718 G T PCDH18 Missense_Mutation p.P958H 0.42 deleterious(0.04) benign(0.176) TCGA-BF-AAP2-01 4 138449897 138449897 G A PCDH18 Silent p.S855S 0.36 TCGA-BF-AAP2-01 4 1389555 1389555 C T CRIPAK Missense_Mutation p.T419I 0.40 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-BF-AAP2-01 4 142651033 142651033 C T IL15 Missense_Mutation p.L92F 0.17 tolerated(0.54) probably_damaging(0.991) TCGA-BF-AAP2-01 4 152049407 152049407 C T SH3D19 Silent p.L691L 0.18 TCGA-BF-AAP2-01 4 152592312 152592312 G A PET112 3'UTR 0.40 TCGA-BF-AAP2-01 4 154557555 154557555 C T KIAA0922 Missense_Mutation p.P1554S 0.31 tolerated(0.11) benign(0.272) TCGA-BF-AAP2-01 4 154625583 154625583 G A TLR2 Silent p.R508R 0.49 TCGA-BF-AAP2-01 4 155507999 155507999 C T FGA Silent p.L194L 0.43 TCGA-BF-AAP2-01 4 156135485 156135485 C T NPY2R Silent p.L132L 0.27 TCGA-BF-AAP2-01 4 156643314 156643314 G A GUCY1A3 Missense_Mutation p.R614Q 0.46 tolerated(0.08) possibly_damaging(0.817) TCGA-BF-AAP2-01 4 156787383 156787383 G A ASIC5 5'UTR 0.40 TCGA-BF-AAP2-01 4 156832685 156832685 G A TDO2 Missense_Mutation p.G219R 0.09 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP2-01 4 160251007 160251007 C T RAPGEF2 Intron 0.29 TCGA-BF-AAP2-01 4 164534527 164534527 C T MARCH1 Missense_Mutation p.G61R 0.12 tolerated(0.27) possibly_damaging(0.729) TCGA-BF-AAP2-01 4 16513664 16513664 G A LDB2 Missense_Mutation p.P227S 0.17 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP2-01 4 166795048 166795048 G A TLL1 5'UTR 0.51 TCGA-BF-AAP2-01 4 169327166 169327166 T C DDX60L Missense_Mutation p.R1050G 0.39 deleterious(0) possibly_damaging(0.889) TCGA-BF-AAP2-01 4 170991764 170991764 G A AADAT Missense_Mutation p.P232S 0.36 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 4 175897501 175897501 G A ADAM29 Silent p.E275E 0.30 TCGA-BF-AAP2-01 4 175898032 175898032 G A ADAM29 Silent p.G452G 0.31 TCGA-BF-AAP2-01 4 177084326 177084326 C T WDR17 Missense_Mutation p.R982C 0.22 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 4 177100723 177100723 C T WDR17 Missense_Mutation p.P1321L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP2-01 4 1808273 1808273 C T FGFR3 Silent p.V679V 0.26 TCGA-BF-AAP2-01 4 183659667 183659667 G A TENM3 Missense_Mutation p.D1117N 0.32 tolerated(0.25) benign(0) TCGA-BF-AAP2-01 4 183673109 183673109 G A TENM3 Silent p.E1262E 0.36 TCGA-BF-AAP2-01 4 184931994 184931994 C T STOX2 Missense_Mutation p.S668L 0.47 tolerated_low_confidence(0.29) benign(0.001) TCGA-BF-AAP2-01 4 187629191 187629191 A T FAT1 Missense_Mutation p.D597E 0.40 probably_damaging(0.999) TCGA-BF-AAP2-01 4 189068456 189068456 C T TRIML1 Missense_Mutation p.S446F 0.46 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 4 1953847 1953847 C T WHSC1 Missense_Mutation p.P676S 0.39 tolerated(0.78) benign(0.002) TCGA-BF-AAP2-01 4 22737629 22737629 C T GBA3 Silent p.G28G 0.08 TCGA-BF-AAP2-01 4 2306488 2306488 G A ZFYVE28 Silent p.L527L 0.18 TCGA-BF-AAP2-01 4 24543616 24543616 G A DHX15 Silent p.S455S 0.38 TCGA-BF-AAP2-01 4 26483428 26483428 C T CCKAR Missense_Mutation p.M373I 0.37 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP2-01 4 2886294 2886294 G A ADD1 Silent p.A137A 0.37 TCGA-BF-AAP2-01 4 3190766 3190766 T G HTT Missense_Mutation p.Y1772D 0.42 probably_damaging(0.979) TCGA-BF-AAP2-01 4 36148921 36148921 C T ARAP2 Missense_Mutation p.G1087E 0.37 deleterious(0) possibly_damaging(0.833) TCGA-BF-AAP2-01 4 36230270 36230270 C T ARAP2 Missense_Mutation p.R280Q 0.42 deleterious(0.03) benign(0.048) TCGA-BF-AAP2-01 4 38799926 38799926 C T TLR1 Missense_Mutation p.G176E 0.33 tolerated(0.27) benign(0.157) TCGA-BF-AAP2-01 4 39000422 39000422 C T TMEM156 Missense_Mutation p.E66K 0.53 tolerated(0.11) possibly_damaging(0.901) TCGA-BF-AAP2-01 4 39469150 39469150 C T LIAS Silent p.I207I 0.11 TCGA-BF-AAP2-01 4 40115082 40115082 C T N4BP2 Missense_Mutation p.R540W 0.39 deleterious(0) probably_damaging(0.976) TCGA-BF-AAP2-01 4 4199104 4199104 C T OTOP1 Missense_Mutation p.R486K 0.17 tolerated(0.91) benign(0.014) TCGA-BF-AAP2-01 4 4199349 4199349 G T OTOP1 Silent p.I404I 0.47 TCGA-BF-AAP2-01 4 46314549 46314549 C T GABRA2 Missense_Mutation p.R147Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP2-01 4 52861375 52861375 C T LRRC66 Missense_Mutation p.E605K 0.27 tolerated(0.16) benign(0.043) TCGA-BF-AAP2-01 4 56277803 56277803 C T TMEM165 Missense_Mutation p.P77L 0.39 tolerated(0.14) benign(0.021) TCGA-BF-AAP2-01 4 67142560 67142560 G A MIR1269A RNA 0.38 TCGA-BF-AAP2-01 4 68484807 68484807 C T UBA6 Missense_Mutation p.D1023N 0.43 tolerated(0.08) benign(0.348) TCGA-BF-AAP2-01 4 68964742 68964742 G A TMPRSS11F Missense_Mutation p.S9L 0.41 deleterious_low_confidence(0.01) benign(0.343) TCGA-BF-AAP2-01 4 69798446 69798446 T A UGT2A3 Missense_Mutation p.E299V 0.45 deleterious(0.01) possibly_damaging(0.896) TCGA-BF-AAP2-01 4 69811118 69811118 C T UGT2A3 Missense_Mutation p.R257Q 0.18 deleterious(0.02) possibly_damaging(0.477) TCGA-BF-AAP2-01 4 69973894 69973894 C T UGT2B7 Silent p.I388I 0.43 TCGA-BF-AAP2-01 4 70146564 70146564 C T UGT2B28 Silent p.L116L 0.35 TCGA-BF-AAP2-01 4 71508306 71508306 G A ENAM Missense_Mutation p.R388K 0.43 tolerated(0.33) probably_damaging(0.983) TCGA-BF-AAP2-01 4 73149266 73149266 G A ADAMTS3 Missense_Mutation p.H1069Y 0.41 tolerated(0.15) benign(0.044) TCGA-BF-AAP2-01 4 74285296 74285296 C T ALB Silent p.F575F 0.13 TCGA-BF-AAP2-01 4 74846987 74846987 C T PF4 Silent p.R80R 0.27 TCGA-BF-AAP2-01 4 76895244 76895244 G A SDAD1 Silent p.F207F 0.46 TCGA-BF-AAP2-01 4 80329332 80329332 G A GK2 Missense_Mutation p.A8V 0.40 tolerated(0.36) benign(0.001) TCGA-BF-AAP2-01 4 8469898 8469898 C T TRMT44 Silent p.P584P 0.52 TCGA-BF-AAP2-01 4 88116716 88116716 G A KLHL8 5'UTR 0.39 TCGA-BF-AAP2-01 4 89013379 89013379 G A ABCG2 3'UTR 0.23 TCGA-BF-AAP2-01 4 90169165 90169165 G A GPRIN3 Silent p.S699S 0.48 TCGA-BF-AAP2-01 4 95539296 95539296 C T PDLIM5 Silent p.S383S 0.17 TCGA-BF-AAP2-01 5 10227691 10227691 G A FAM173B Silent p.F188F 0.49 TCGA-BF-AAP2-01 5 1079517 1079517 G A SLC12A7 Silent p.F464F 0.36 TCGA-BF-AAP2-01 5 112177975 112177975 G T APC Missense_Mutation p.R2228S 0.34 probably_damaging(0.999) TCGA-BF-AAP2-01 5 118970297 118970297 G A FAM170A Missense_Mutation p.G285E 0.44 tolerated(1) benign(0.001) TCGA-BF-AAP2-01 5 1201864 1201864 G A SLC6A19 Silent p.P33P 0.23 TCGA-BF-AAP2-01 5 121488226 121488226 C T ZNF474 Missense_Mutation p.L181F 0.28 tolerated(0.19) possibly_damaging(0.789) TCGA-BF-AAP2-01 5 121787227 121787227 C T SNCAIP Silent p.T895T 0.48 TCGA-BF-AAP2-01 5 122281840 122281840 G A SNX24 Missense_Mutation p.E79K 0.39 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 5 1232998 1232998 G A SLC6A18 Missense_Mutation p.R145K 0.45 tolerated(0.13) benign(0.117) TCGA-BF-AAP2-01 5 127666379 127666379 C T FBN2 Missense_Mutation p.E1411K 0.41 deleterious(0) possibly_damaging(0.881) TCGA-BF-AAP2-01 5 127727732 127727732 C T FBN2 Missense_Mutation p.D528N 0.43 tolerated(0.08) probably_damaging(0.994) TCGA-BF-AAP2-01 5 128983558 128983558 G A ADAMTS19 Missense_Mutation p.G652E 0.39 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 5 131722718 131722718 T C SLC22A5 Missense_Mutation p.F276L 0.48 tolerated(0.26) benign(0.006) TCGA-BF-AAP2-01 5 134785222 134785222 C T TIFAB Silent p.L136L 0.32 TCGA-BF-AAP2-01 5 137071492 137071492 C T KLHL3 5'UTR 0.43 TCGA-BF-AAP2-01 5 13719036 13719036 C T DNAH5 Missense_Mutation p.D4152N 0.40 benign(0.016) TCGA-BF-AAP2-01 5 13735388 13735388 G A DNAH5 Silent p.I3871I 0.12 TCGA-BF-AAP2-01 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.45 TCGA-BF-AAP2-01 5 13781029 13781029 G A DNAH5 Silent p.L2954L 0.33 TCGA-BF-AAP2-01 5 13807762 13807762 G A DNAH5 Missense_Mutation p.P2609S 0.33 possibly_damaging(0.876) TCGA-BF-AAP2-01 5 138643564 138643564 C T MATR3 Missense_Mutation p.P154S 0.48 tolerated(0.19) benign(0.004) TCGA-BF-AAP2-01 5 140183066 140183066 G A PCDHA3 Missense_Mutation p.E762K 0.35 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-BF-AAP2-01 5 140207722 140207722 C T PCDHA6 Missense_Mutation p.L16F 0.39 tolerated_low_confidence(0.23) benign(0.104) TCGA-BF-AAP2-01 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.39 tolerated_low_confidence(0.09) benign(0.294) TCGA-BF-AAP2-01 5 140236606 140236606 G A PCDHA10 Missense_Mutation p.G325R 0.31 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BF-AAP2-01 5 140248881 140248881 C T PCDHA11 Missense_Mutation p.R65W 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-BF-AAP2-01 5 140262805 140262805 A G PCDHA13 Missense_Mutation p.I318V 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.874) TCGA-BF-AAP2-01 5 140432091 140432091 G A PCDHB1 Missense_Mutation p.E346K 0.43 deleterious(0.03) benign(0.385) TCGA-BF-AAP2-01 5 140432422 140432422 C T PCDHB1 Missense_Mutation p.S456F 0.46 deleterious(0.04) benign(0.013) TCGA-BF-AAP2-01 5 140481027 140481027 C T PCDHB3 Missense_Mutation p.S265L 0.30 tolerated_low_confidence(0.06) benign(0.058) TCGA-BF-AAP2-01 5 140501875 140501875 G A PCDHB4 Missense_Mutation p.E99K 0.22 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-BF-AAP2-01 5 140554032 140554032 C T PCDHB7 Missense_Mutation p.P539L 0.32 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-BF-AAP2-01 5 140554380 140554380 C T PCDHB7 Missense_Mutation p.T655I 0.18 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-BF-AAP2-01 5 140554399 140554399 C T PCDHB7 Silent p.L661L 0.15 TCGA-BF-AAP2-01 5 140557629 140557629 G A PCDHB8 Missense_Mutation p.G5E 0.07 tolerated_low_confidence(1) benign(0) TCGA-BF-AAP2-01 5 140558412 140558412 C T PCDHB8 Missense_Mutation p.S266F 0.13 deleterious_low_confidence(0.03) benign(0.055) TCGA-BF-AAP2-01 5 140573103 140573103 C T PCDHB10 Silent p.G326G 0.09 TCGA-BF-AAP2-01 5 140595806 140595806 C T PCDHB13 Missense_Mutation p.S704L 0.40 deleterious_low_confidence(0) benign(0.413) TCGA-BF-AAP2-01 5 140615605 140615605 C T PCDHB18 RNA 0.32 TCGA-BF-AAP2-01 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.43 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-BF-AAP2-01 5 140719516 140719516 C T PCDHGA2 Silent p.G326G 0.38 TCGA-BF-AAP2-01 5 140719517 140719517 C T PCDHGA2 Missense_Mutation p.L327F 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.723) TCGA-BF-AAP2-01 5 140763185 140763185 C T PCDHGA7 Missense_Mutation p.P240L 0.50 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BF-AAP2-01 5 140764202 140764202 C T PCDHGA7 Missense_Mutation p.P579L 0.06 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BF-AAP2-01 5 140784877 140784877 G A PCDHGA9 Silent p.E786E 0.13 TCGA-BF-AAP2-01 5 141335008 141335008 C T PCDH12 Missense_Mutation p.M803I 0.44 tolerated(0.2) benign(0.013) TCGA-BF-AAP2-01 5 14489092 14489092 C T TRIO Intron 0.35 TCGA-BF-AAP2-01 5 145252532 145252532 C T GRXCR2 5'Flank 0.27 TCGA-BF-AAP2-01 5 145393573 145393573 G A SH3RF2 Silent p.V336V 0.40 TCGA-BF-AAP2-01 5 145826943 145826943 A G TCERG1 Missense_Mutation p.S11G 0.28 tolerated_low_confidence(1) unknown(0) TCGA-BF-AAP2-01 5 145894558 145894558 C T GPR151 Silent p.G373G 0.44 TCGA-BF-AAP2-01 5 146703569 146703569 G A STK32A Silent p.V123V 0.24 TCGA-BF-AAP2-01 5 146795299 146795299 C T DPYSL3 Missense_Mutation p.E265K 0.43 deleterious(0) probably_damaging(0.911) TCGA-BF-AAP2-01 5 147449970 147449970 G A SPINK5 Missense_Mutation p.G56R 0.31 deleterious(0.03) benign(0.315) TCGA-BF-AAP2-01 5 149276035 149276035 C T PDE6A Missense_Mutation p.E502K 0.31 tolerated(0.2) probably_damaging(0.972) TCGA-BF-AAP2-01 5 151784712 151784712 C T NMUR2 5'UTR 0.38 TCGA-BF-AAP2-01 5 153175112 153175112 G A GRIA1 Intron 0.56 TCGA-BF-AAP2-01 5 156482347 156482347 C T HAVCR1 Missense_Mutation p.D82N 0.41 tolerated(1) possibly_damaging(0.728) TCGA-BF-AAP2-01 5 156932771 156932771 C T ADAM19 Missense_Mutation p.E346K 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 5 159992489 159992489 G A ATP10B Missense_Mutation p.R1453C 0.41 deleterious_low_confidence(0.02) benign(0.072) TCGA-BF-AAP2-01 5 161115978 161115978 C T GABRA6 Silent p.F83F 0.21 TCGA-BF-AAP2-01 5 161322873 161322873 A C GABRA1 Missense_Mutation p.K353T 0.51 tolerated(0.22) probably_damaging(0.995) TCGA-BF-AAP2-01 5 162918285 162918285 C T HMMR 3'UTR 0.36 TCGA-BF-AAP2-01 5 167525101 167525101 C T TENM2 Silent p.F594F 0.36 TCGA-BF-AAP2-01 5 169446093 169446093 G A DOCK2 Missense_Mutation p.R1121K 0.53 tolerated(0.32) benign(0.001) TCGA-BF-AAP2-01 5 169468121 169468121 C T DOCK2 Missense_Mutation p.T1243M 0.43 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 5 170222378 170222378 G A GABRP Missense_Mutation p.G136E 0.44 tolerated(1) benign(0.04) TCGA-BF-AAP2-01 5 170648781 170648781 G A RANBP17 Missense_Mutation p.D787N 0.43 tolerated(0.09) possibly_damaging(0.494) TCGA-BF-AAP2-01 5 176026435 176026435 G A GPRIN1 Missense_Mutation p.S134F 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-BF-AAP2-01 5 178505788 178505788 C T ZNF354C Missense_Mutation p.H119Y 0.49 tolerated(1) benign(0.001) TCGA-BF-AAP2-01 5 179192922 179192922 C T MAML1 Missense_Mutation p.P304L 0.10 deleterious(0.03) probably_damaging(0.917) TCGA-BF-AAP2-01 5 180338456 180338456 G A BTNL8 Missense_Mutation p.G172E 0.34 deleterious(0) probably_damaging(0.928) TCGA-BF-AAP2-01 5 180419893 180419893 C T BTNL3 Missense_Mutation p.P44S 0.12 tolerated(0.11) probably_damaging(1) TCGA-BF-AAP2-01 5 24511593 24511593 G A CDH10 Missense_Mutation p.S282F 0.46 deleterious(0.01) possibly_damaging(0.765) TCGA-BF-AAP2-01 5 26915832 26915832 C T CDH9 Silent p.S143S 0.30 TCGA-BF-AAP2-01 5 32010436 32010436 G A PDZD2 Missense_Mutation p.E419K 0.33 deleterious(0) probably_damaging(0.981) TCGA-BF-AAP2-01 5 32061112 32061112 G A PDZD2 Missense_Mutation p.G775R 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 5 33751508 33751508 C T ADAMTS12 Splice_Site p.X212_splice 0.28 TCGA-BF-AAP2-01 5 35857013 35857013 C T IL7R 5'UTR 0.12 TCGA-BF-AAP2-01 5 35955855 35955855 C T UGT3A1 Missense_Mutation p.G396E 0.12 tolerated(0.91) benign(0.009) TCGA-BF-AAP2-01 5 36181984 36181984 C T SKP2 Missense_Mutation p.L376F 0.43 deleterious(0.01) probably_damaging(0.933) TCGA-BF-AAP2-01 5 36257071 36257071 C T RANBP3L Missense_Mutation p.G317E 0.42 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 5 38481746 38481746 C T LIFR Missense_Mutation p.G1082E 0.38 tolerated(0.14) benign(0.37) TCGA-BF-AAP2-01 5 39202252 39202252 C T FYB Missense_Mutation p.G281R 0.41 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP2-01 5 39202253 39202253 C T FYB Silent p.R280R 0.43 TCGA-BF-AAP2-01 5 39202849 39202849 C T FYB Missense_Mutation p.E82K 0.24 deleterious(0.01) possibly_damaging(0.543) TCGA-BF-AAP2-01 5 39311479 39311479 C T C9 Missense_Mutation p.E291K 0.28 tolerated(0.49) benign(0.05) TCGA-BF-AAP2-01 5 41160283 41160283 C T C6 Missense_Mutation p.G549S 0.39 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 5 41313799 41313799 C T PLCXD3 Missense_Mutation p.D296N 0.27 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 5 45262218 45262218 G A HCN1 Silent p.G826G 0.43 TCGA-BF-AAP2-01 5 45645560 45645560 C T HCN1 Missense_Mutation p.M192I 0.36 tolerated(0.1) possibly_damaging(0.69) TCGA-BF-AAP2-01 5 50056185 50056185 G A PARP8 Missense_Mutation p.E112K 0.36 deleterious_low_confidence(0.03) benign(0.427) TCGA-BF-AAP2-01 5 50130847 50130847 C T PARP8 Silent p.F820F 0.29 TCGA-BF-AAP2-01 5 56777555 56777555 T G ACTBL2 Missense_Mutation p.K327T 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.758) TCGA-BF-AAP2-01 5 64492907 64492907 G A ADAMTS6 Missense_Mutation p.P883S 0.31 tolerated(0.27) benign(0.005) TCGA-BF-AAP2-01 5 70805562 70805562 C T BDP1 Silent p.A881A 0.46 TCGA-BF-AAP2-01 5 78340133 78340133 G A DMGDH Missense_Mutation p.P330S 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-BF-AAP2-01 5 78379181 78379181 C T BHMT2 Silent p.L255L 0.21 TCGA-BF-AAP2-01 5 7878347 7878347 C T MTRR Missense_Mutation p.S258L 0.42 deleterious(0) benign(0.357) TCGA-BF-AAP2-01 5 79027573 79027573 G A CMYA5 Silent p.A995A 0.44 TCGA-BF-AAP2-01 5 79282804 79282804 G A MTX3 Silent p.I175I 0.36 TCGA-BF-AAP2-01 5 79950682 79950682 C T MSH3 Nonsense_Mutation p.Q46* 0.43 TCGA-BF-AAP2-01 5 80552765 80552765 C T CKMT2 Missense_Mutation p.P234L 0.33 deleterious(0) probably_damaging(0.925) TCGA-BF-AAP2-01 5 82833944 82833944 G A VCAN Missense_Mutation p.E1708K 0.44 tolerated(0.08) benign(0.03) TCGA-BF-AAP2-01 5 82937368 82937368 G A HAPLN1 Missense_Mutation p.P338S 0.41 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 5 83360657 83360657 G A EDIL3 Missense_Mutation p.R272C 0.26 tolerated(0.05) possibly_damaging(0.79) TCGA-BF-AAP2-01 5 86658401 86658401 G A RASA1 Missense_Mutation p.G456S 0.22 tolerated(0.26) probably_damaging(0.994) TCGA-BF-AAP2-01 5 89814526 89814526 A C LYSMD3 3'UTR 0.33 TCGA-BF-AAP2-01 5 89938766 89938766 G A GPR98 Missense_Mutation p.E821K 0.28 possibly_damaging(0.636) TCGA-BF-AAP2-01 5 89979802 89979802 G A GPR98 Missense_Mutation p.E2022K 0.32 probably_damaging(0.973) TCGA-BF-AAP2-01 5 90101105 90101105 G A GPR98 Missense_Mutation p.G4889E 0.24 probably_damaging(0.972) TCGA-BF-AAP2-01 5 92929515 92929515 C T NR2F1 Silent p.F413F 0.14 TCGA-BF-AAP2-01 6 100838339 100838339 G A SIM1 Silent p.G733G 0.46 TCGA-BF-AAP2-01 6 100838361 100838361 G A SIM1 Missense_Mutation p.T726I 0.75 deleterious_low_confidence(0.01) benign(0.02) TCGA-BF-AAP2-01 6 100911241 100911241 G A SIM1 Missense_Mutation p.S35L 0.68 deleterious(0) probably_damaging(0.954) TCGA-BF-AAP2-01 6 105178215 105178215 G A HACE1 Missense_Mutation p.P864S 0.72 tolerated(0.55) benign(0.006) TCGA-BF-AAP2-01 6 10784717 10784717 C T MAK Missense_Mutation p.E469K 0.25 tolerated(0.83) benign(0.004) TCGA-BF-AAP2-01 6 110714300 110714300 C T DDO Missense_Mutation p.G263E 0.80 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 6 112460323 112460323 C T LAMA4 Missense_Mutation p.G1094E 0.29 tolerated(0.12) probably_damaging(1) TCGA-BF-AAP2-01 6 112670956 112670956 G A RFPL4B Missense_Mutation p.D16N 0.66 tolerated(0.19) benign(0.009) TCGA-BF-AAP2-01 6 112671325 112671325 C T RFPL4B Missense_Mutation p.P139S 0.68 tolerated(0.22) benign(0.114) TCGA-BF-AAP2-01 6 117127828 117127828 G A GPRC6A Missense_Mutation p.P347L 0.20 deleterious(0.03) possibly_damaging(0.772) TCGA-BF-AAP2-01 6 117130744 117130744 C T GPRC6A Missense_Mutation p.M77I 0.76 deleterious(0) probably_damaging(0.94) TCGA-BF-AAP2-01 6 119295667 119295667 C T FAM184A Silent p.E947E 0.43 TCGA-BF-AAP2-01 6 123118064 123118064 C T SMPDL3A Missense_Mutation p.P141L 0.69 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP2-01 6 128134538 128134538 G A THEMIS Silent p.I416I 0.58 TCGA-BF-AAP2-01 6 128643445 128643445 C T PTPRK Missense_Mutation p.M78I 0.78 deleterious(0.03) benign(0.011) TCGA-BF-AAP2-01 6 131191094 131191094 G A EPB41L2 Missense_Mutation p.S739F 0.66 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP2-01 6 137325881 137325881 G A IL20RA Silent p.F247F 0.75 TCGA-BF-AAP2-01 6 137332464 137332464 C T IL20RA Missense_Mutation p.G117E 0.78 tolerated(0.54) benign(0.01) TCGA-BF-AAP2-01 6 146351095 146351095 C T GRM1 Missense_Mutation p.P148S 0.18 tolerated(0.81) benign(0.007) TCGA-BF-AAP2-01 6 15246765 15246765 C T JARID2 5'UTR 0.10 TCGA-BF-AAP2-01 6 160221758 160221758 G A PNLDC1 5'UTR 0.47 TCGA-BF-AAP2-01 6 168445517 168445517 G A KIF25 Silent p.A332A 0.40 TCGA-BF-AAP2-01 6 169053744 169053744 C T SMOC2 Missense_Mutation p.P385L 0.68 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP2-01 6 170597817 170597817 C T DLL1 Missense_Mutation p.E138K 0.44 tolerated(0.2) benign(0.284) TCGA-BF-AAP2-01 6 17688837 17688838 - G NUP153 Frame_Shift_Ins p.R42Qfs*7 0.25 TCGA-BF-AAP2-01 6 18465341 18465341 G A RNF144B 3'UTR 0.17 TCGA-BF-AAP2-01 6 2117722 2117722 G A GMDS Silent p.P72P 0.18 TCGA-BF-AAP2-01 6 24357569 24357569 G A KAAG1 5'UTR 0.42 TCGA-BF-AAP2-01 6 25913566 25913566 C T SLC17A2 Missense_Mutation p.R423K 0.20 tolerated(0.19) benign(0) TCGA-BF-AAP2-01 6 26104393 26104393 A G HIST1H4C Missense_Mutation p.Y73C 0.30 deleterious(0.02) probably_damaging(0.946) TCGA-BF-AAP2-01 6 26509090 26509090 G A BTN1A1 Silent p.G423G 0.30 TCGA-BF-AAP2-01 6 26638363 26638363 G A ZNF322 Missense_Mutation p.S140F 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-BF-AAP2-01 6 27218487 27218487 C T PRSS16 Silent p.L165L 0.64 TCGA-BF-AAP2-01 6 27368839 27368839 C T ZNF391 Silent p.F230F 0.32 TCGA-BF-AAP2-01 6 28227364 28227364 G A NKAPL Missense_Mutation p.R72Q 0.34 tolerated(0.08) unknown(0) TCGA-BF-AAP2-01 6 29054567 29054567 G A OR2B3 Silent p.F153F 0.09 TCGA-BF-AAP2-01 6 29054597 29054597 C T OR2B3 Silent p.R143R 0.22 TCGA-BF-AAP2-01 6 29275118 29275118 C T OR14J1 Missense_Mutation p.R218C 0.25 tolerated(0.05) possibly_damaging(0.846) TCGA-BF-AAP2-01 6 30574368 30574368 G A PPP1R10 Missense_Mutation p.P171S 0.05 tolerated(0.25) benign(0.083) TCGA-BF-AAP2-01 6 30653270 30653270 G A PPP1R18 Missense_Mutation p.P176S 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP2-01 6 30951752 30951752 G A MUC21 Missense_Mutation p.G6E 0.21 tolerated_low_confidence(0.07) unknown(0) TCGA-BF-AAP2-01 6 31105816 31105816 G A PSORS1C2 Missense_Mutation p.P108L 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP2-01 6 31593273 31593273 C T PRRC2A Missense_Mutation p.P215L 0.61 unknown(0) TCGA-BF-AAP2-01 6 31729314 31729314 C T MSH5 Silent p.P702P 0.57 TCGA-BF-AAP2-01 6 31778271 31778271 C T HSPA1L Silent p.T493T 0.34 TCGA-BF-AAP2-01 6 31779294 31779294 G A HSPA1L Silent p.F152F 0.40 TCGA-BF-AAP2-01 6 32030126 32030126 G A TNXB Missense_Mutation p.P2326S 0.34 probably_damaging(0.994) TCGA-BF-AAP2-01 6 32629954 32629954 C T HLA-DQB1 Missense_Mutation p.V151M 0.30 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 6 32726837 32726837 C T HLA-DQB2 Missense_Mutation p.V146M 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 6 33146465 33146465 C T COL11A2 Silent p.K484K 0.21 TCGA-BF-AAP2-01 6 33382302 33382302 C T PHF1 Missense_Mutation p.L309F 0.25 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 6 33608316 33608316 C T ITPR3 Missense_Mutation p.P49S 0.18 deleterious(0) probably_damaging(0.952) TCGA-BF-AAP2-01 6 33608317 33608317 C T ITPR3 Missense_Mutation p.P49L 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-BF-AAP2-01 6 34496573 34496573 C T PACSIN1 Silent p.I125I 0.10 TCGA-BF-AAP2-01 6 35928619 35928619 C T SLC26A8 Splice_Site p.X546_splice 0.41 TCGA-BF-AAP2-01 6 36269974 36269974 C T PNPLA1 Missense_Mutation p.P371L 0.57 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-BF-AAP2-01 6 36359651 36359651 C T PXT1 Missense_Mutation p.D101N 0.51 tolerated_low_confidence(0.59) benign(0.006) TCGA-BF-AAP2-01 6 37358539 37358539 C T RNF8 3'UTR 0.41 TCGA-BF-AAP2-01 6 38854635 38854635 C T DNAH8 Silent p.D2559D 0.24 TCGA-BF-AAP2-01 6 39034053 39034053 C T GLP1R Silent p.I161I 0.50 TCGA-BF-AAP2-01 6 39162005 39162005 C T KCNK5 Missense_Mutation p.E192K 0.11 deleterious(0) possibly_damaging(0.713) TCGA-BF-AAP2-01 6 40360041 40360041 C T LRFN2 Missense_Mutation p.E671K 0.47 tolerated(0.49) benign(0.057) TCGA-BF-AAP2-01 6 4130733 4130733 G A ECI2 Missense_Mutation p.S125F 0.38 deleterious(0.01) possibly_damaging(0.697) TCGA-BF-AAP2-01 6 41617555 41617555 C T MDFI Missense_Mutation p.S153F 0.18 deleterious(0) possibly_damaging(0.897) TCGA-BF-AAP2-01 6 41708243 41708243 C T PGC Silent p.Q251Q 0.24 TCGA-BF-AAP2-01 6 42224794 42224794 G A TRERF1 Nonsense_Mutation p.Q795* 0.39 TCGA-BF-AAP2-01 6 43110004 43110004 A T PTK7 Missense_Mutation p.I680F 0.22 tolerated(0.08) probably_damaging(1) TCGA-BF-AAP2-01 6 43310472 43310472 G A ZNF318 Missense_Mutation p.T1073I 0.48 possibly_damaging(0.877) TCGA-BF-AAP2-01 6 43417872 43417872 C T ABCC10 3'UTR 0.38 TCGA-BF-AAP2-01 6 44329589 44329589 G A SPATS1 Nonsense_Mutation p.W145* 0.06 TCGA-BF-AAP2-01 6 45296089 45296089 G A RUNX2 5'Flank 0.55 TCGA-BF-AAP2-01 6 46111457 46111457 G A ENPP4 3'UTR 0.29 TCGA-BF-AAP2-01 6 46678370 46678370 G A PLA2G7 Missense_Mutation p.S230F 0.33 tolerated(0.09) probably_damaging(0.975) TCGA-BF-AAP2-01 6 47563663 47563663 C T CD2AP Missense_Mutation p.P392L 0.36 deleterious(0) benign(0.109) TCGA-BF-AAP2-01 6 47649213 47649213 C T GPR111 Silent p.F306F 0.13 TCGA-BF-AAP2-01 6 47976533 47976533 G A PTCHD4 Silent p.A248A 0.47 TCGA-BF-AAP2-01 6 49803150 49803150 G A CRISP1 Missense_Mutation p.P210L 0.28 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP2-01 6 4995293 4995293 G A RPP40 3'UTR 0.33 TCGA-BF-AAP2-01 6 52288929 52288929 G A EFHC1 Silent p.A83A 0.55 TCGA-BF-AAP2-01 6 52288930 52288930 G A EFHC1 Missense_Mutation p.D84N 0.52 tolerated(0.17) benign(0.003) TCGA-BF-AAP2-01 6 55223860 55223860 C T GFRAL Silent p.T292T 0.35 TCGA-BF-AAP2-01 6 56480867 56480867 G A DST Intron 0.16 TCGA-BF-AAP2-01 6 63990125 63990125 C T LGSN Missense_Mutation p.S444N 0.38 tolerated(0.17) benign(0.001) TCGA-BF-AAP2-01 6 69685161 69685161 G A BAI3 Missense_Mutation p.G555R 0.36 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 6 7373468 7373468 C T CAGE1 Silent p.T528T 0.29 TCGA-BF-AAP2-01 6 74476678 74476678 C T CD109 Missense_Mutation p.S481L 0.70 tolerated(0.07) benign(0.013) TCGA-BF-AAP2-01 6 7576628 7576628 C T DSP Missense_Mutation p.S911F 0.16 benign(0.229) TCGA-BF-AAP2-01 6 84930864 84930864 G A KIAA1009 Missense_Mutation p.S28L 0.70 deleterious(0.01) possibly_damaging(0.713) TCGA-BF-AAP2-01 6 90605710 90605710 C T GJA10 Missense_Mutation p.P508L 0.59 tolerated_low_confidence(0.14) benign(0) TCGA-BF-AAP2-01 6 97702456 97702456 G A MMS22L Missense_Mutation p.R366C 0.76 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP2-01 7 100086258 100086258 C T NYAP1 Missense_Mutation p.S305L 0.07 tolerated(0.19) possibly_damaging(0.719) TCGA-BF-AAP2-01 7 100244707 100244707 C T ACTL6B Missense_Mutation p.V275M 0.31 tolerated(0.13) benign(0.14) TCGA-BF-AAP2-01 7 100350035 100350035 C T ZAN Silent p.S769S 0.07 TCGA-BF-AAP2-01 7 100675421 100675421 G A MUC17 Missense_Mutation p.E242K 0.46 benign(0.008) TCGA-BF-AAP2-01 7 100677185 100677185 C T MUC17 Missense_Mutation p.P830S 0.34 unknown(0) TCGA-BF-AAP2-01 7 110763239 110763239 C T LRRN3 Silent p.S137S 0.36 TCGA-BF-AAP2-01 7 115581060 115581060 G A TFEC Intron 0.39 TCGA-BF-AAP2-01 7 127255417 127255417 C T PAX4 Intron 0.20 TCGA-BF-AAP2-01 7 128478840 128478840 C T FLNC Missense_Mutation p.P465L 0.22 tolerated(0.13) benign(0.063) TCGA-BF-AAP2-01 7 129064943 129064943 C T AHCYL2 Missense_Mutation p.R557C 0.34 deleterious(0) probably_damaging(0.945) TCGA-BF-AAP2-01 7 129856327 129856327 C T SSMEM1 3'UTR 0.06 TCGA-BF-AAP2-01 7 131912261 131912261 G A PLXNA4 Nonsense_Mutation p.Q611* 0.55 TCGA-BF-AAP2-01 7 133749224 133749224 C T EXOC4 Silent p.I956I 0.46 TCGA-BF-AAP2-01 7 133933779 133933779 C T LRGUK Missense_Mutation p.L717F 0.30 tolerated(0.73) benign(0.006) TCGA-BF-AAP2-01 7 134212729 134212729 G A AKR1B10 Silent p.K22K 0.38 TCGA-BF-AAP2-01 7 134221867 134221867 C T AKR1B10 Missense_Mutation p.T206I 0.66 tolerated(0.21) possibly_damaging(0.819) TCGA-BF-AAP2-01 7 134261113 134261113 G A AKR1B15 Silent p.E252E 0.10 TCGA-BF-AAP2-01 7 137172368 137172368 G A DGKI Silent p.D790D 0.22 TCGA-BF-AAP2-01 7 137612984 137612986 GAT - CREB3L2 In_Frame_Del p.I77del 0.33 TCGA-BF-AAP2-01 7 138413509 138413509 G A ATP6V0A4 Silent p.S669S 0.31 TCGA-BF-AAP2-01 7 138951142 138951142 C T UBN2 Missense_Mutation p.L487F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP2-01 7 140082336 140082336 G A SLC37A3 5'UTR 0.13 TCGA-BF-AAP2-01 7 140301724 140301724 G A DENND2A Silent p.S158S 0.41 TCGA-BF-AAP2-01 7 141408608 141408608 C T WEE2 Missense_Mutation p.S17F 0.24 deleterious(0.04) benign(0.177) TCGA-BF-AAP2-01 7 141734562 141734562 G A MGAM Missense_Mutation p.G627E 0.29 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 7 141896581 141896581 C T RP11-1220K2.2 Missense_Mutation p.P1533S 0.33 probably_damaging(0.994) TCGA-BF-AAP2-01 7 141951993 141951993 G A PRSS58 3'UTR 0.24 TCGA-BF-AAP2-01 7 142176752 142176752 G A TRBV7-4 Silent p.F13F 0.29 TCGA-BF-AAP2-01 7 142180907 142180907 C T TRBV6-5 Nonsense_Mutation p.W15* 0.32 TCGA-BF-AAP2-01 7 142658901 142658901 C T KEL Missense_Mutation p.G21E 0.43 tolerated_low_confidence(0.15) benign(0.008) TCGA-BF-AAP2-01 7 142724101 142724101 C T OR9A2 Missense_Mutation p.G40E 0.38 deleterious(0) probably_damaging(0.97) TCGA-BF-AAP2-01 7 143095831 143095831 G A EPHA1 Missense_Mutation p.T400I 0.24 tolerated(0.08) benign(0.006) TCGA-BF-AAP2-01 7 143141476 143141476 C T TAS2R60 Missense_Mutation p.R311C 0.44 tolerated(0.66) benign(0) TCGA-BF-AAP2-01 7 143701753 143701753 C T OR6B1 Silent p.L222L 0.23 TCGA-BF-AAP2-01 7 143748174 143748174 G A OR2A5 Missense_Mutation p.R227K 0.37 tolerated(0.74) benign(0.019) TCGA-BF-AAP2-01 7 143748211 143748211 C T OR2A5 Silent p.S239S 0.35 TCGA-BF-AAP2-01 7 143792332 143792332 C T OR2A12 Silent p.I44I 0.41 TCGA-BF-AAP2-01 7 150217905 150217905 G A GIMAP7 Nonsense_Mutation p.W281* 0.23 TCGA-BF-AAP2-01 7 150488659 150488659 G A TMEM176B Missense_Mutation p.S258L 0.23 deleterious(0) probably_damaging(0.981) TCGA-BF-AAP2-01 7 150769115 150769115 C T SLC4A2 Silent p.A809A 0.37 TCGA-BF-AAP2-01 7 154679400 154679400 G A DPP6 Missense_Mutation p.E754K 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 7 154738098 154738098 G T PAXIP1 Silent p.L1057L 0.33 TCGA-BF-AAP2-01 7 156967720 156967720 C T UBE3C Silent p.L150L 0.18 TCGA-BF-AAP2-01 7 158715083 158715083 C T WDR60 Missense_Mutation p.S646F 0.35 deleterious(0.03) benign(0.002) TCGA-BF-AAP2-01 7 158715084 158715084 C T WDR60 Silent p.S646S 0.39 TCGA-BF-AAP2-01 7 1587445 1587445 G A TMEM184A Silent p.F315F 0.36 TCGA-BF-AAP2-01 7 20199589 20199589 C T MACC1 Missense_Mutation p.R132K 0.33 tolerated(0.7) benign(0.006) TCGA-BF-AAP2-01 7 21630857 21630857 C T DNAH11 Missense_Mutation p.L777F 0.42 possibly_damaging(0.522) TCGA-BF-AAP2-01 7 23826539 23826539 C T STK31 Missense_Mutation p.S828L 0.39 tolerated(0.21) benign(0.042) TCGA-BF-AAP2-01 7 24705639 24705639 G A MPP6 Splice_Site p.X295_splice 0.23 TCGA-BF-AAP2-01 7 27238041 27238041 C T HOXA13 Missense_Mutation p.D315N 0.50 deleterious(0) possibly_damaging(0.835) TCGA-BF-AAP2-01 7 2946180 2946180 G A CARD11 3'UTR 0.50 TCGA-BF-AAP2-01 7 34009980 34009980 C T BMPER Missense_Mutation p.H148Y 0.42 tolerated(0.38) benign(0.001) TCGA-BF-AAP2-01 7 34118574 34118574 C T BMPER Missense_Mutation p.S395F 0.42 deleterious(0.03) possibly_damaging(0.83) TCGA-BF-AAP2-01 7 4277384 4277384 G A SDK1 Missense_Mutation p.G2033E 0.19 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP2-01 7 44805791 44805791 C T ZMIZ2 Silent p.F757F 0.31 TCGA-BF-AAP2-01 7 45753586 45753586 G A ADCY1 Missense_Mutation p.E1118K 0.44 deleterious_low_confidence(0.01) benign(0.012) TCGA-BF-AAP2-01 7 48314469 48314469 C T ABCA13 Missense_Mutation p.P1736S 0.41 probably_damaging(0.974) TCGA-BF-AAP2-01 7 50450287 50450287 G A IKZF1 Silent p.K157K 0.26 TCGA-BF-AAP2-01 7 53104216 53104216 C T POM121L12 Silent p.A284A 0.22 TCGA-BF-AAP2-01 7 55238166 55238166 T A EGFR Intron 0.08 TCGA-BF-AAP2-01 7 55559984 55559984 G A VOPP1 Missense_Mutation p.P107S 0.18 tolerated_low_confidence(0.34) benign(0.007) TCGA-BF-AAP2-01 7 57528583 57528583 A G ZNF716 Missense_Mutation p.K139R 0.26 tolerated(0.06) possibly_damaging(0.54) TCGA-BF-AAP2-01 7 63726643 63726643 C T ZNF679 Missense_Mutation p.S211F 0.45 tolerated(0.32) benign(0.316) TCGA-BF-AAP2-01 7 64438785 64438785 G A ZNF117 Silent p.P388P 0.44 TCGA-BF-AAP2-01 7 6523605 6523605 G A KDELR2 Silent p.S28S 0.33 TCGA-BF-AAP2-01 7 71175826 71175826 G A WBSCR17 Silent p.L527L 0.39 TCGA-BF-AAP2-01 7 72743375 72743375 G A FKBP6 Missense_Mutation p.G63E 0.43 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 7 73151018 73151018 G A ABHD11 Silent p.P273P 0.13 TCGA-BF-AAP2-01 7 73932556 73932556 C T GTF2IRD1 Missense_Mutation p.P202L 0.44 deleterious(0) benign(0.033) TCGA-BF-AAP2-01 7 73938443 73938443 C T GTF2IRD1 Missense_Mutation p.T382M 0.32 deleterious(0) probably_damaging(0.962) TCGA-BF-AAP2-01 7 7476026 7476026 C T COL28A1 Silent p.K620K 0.10 TCGA-BF-AAP2-01 7 7480465 7480465 C T COL28A1 Missense_Mutation p.G560R 0.18 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP2-01 7 77394908 77394908 C T RSBN1L Missense_Mutation p.P481S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-BF-AAP2-01 7 77408174 77408174 C T RSBN1L Missense_Mutation p.H744Y 0.34 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-BF-AAP2-01 7 80374392 80374392 C T SEMA3C Missense_Mutation p.D692N 0.40 deleterious(0) possibly_damaging(0.623) TCGA-BF-AAP2-01 7 80374393 80374393 C T SEMA3C Silent p.K691K 0.40 TCGA-BF-AAP2-01 7 82583475 82583475 G A PCLO Missense_Mutation p.S2265F 0.40 unknown(0) TCGA-BF-AAP2-01 7 87006732 87006732 C T CROT Missense_Mutation p.S343F 0.30 tolerated(0.74) benign(0.013) TCGA-BF-AAP2-01 7 88423665 88423665 C T C7orf62 Missense_Mutation p.D198N 0.34 tolerated(0.1) probably_damaging(0.948) TCGA-BF-AAP2-01 7 90419931 90419931 G A CDK14 Missense_Mutation p.E152K 0.14 tolerated(0.26) benign(0.209) TCGA-BF-AAP2-01 7 92019360 92019360 A G ANKIB1 Missense_Mutation p.K661R 0.42 tolerated(0.17) benign(0.414) TCGA-BF-AAP2-01 7 92085899 92085899 C T GATAD1 3'UTR 0.50 TCGA-BF-AAP2-01 7 92099687 92099687 G T ERVW-1 Silent p.L3L 0.40 TCGA-BF-AAP2-01 7 92761935 92761935 G A SAMD9L Missense_Mutation p.S1117F 0.45 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 7 92764944 92764944 G A SAMD9L Missense_Mutation p.S114L 0.48 tolerated(0.31) benign(0.02) TCGA-BF-AAP2-01 7 92881984 92881984 C T CCDC132 Nonsense_Mutation p.R41* 0.40 TCGA-BF-AAP2-01 7 93108786 93108786 G A CALCR Nonsense_Mutation p.Q47* 0.40 TCGA-BF-AAP2-01 7 94913450 94913450 C T PPP1R9A Silent p.S1139S 0.38 TCGA-BF-AAP2-01 7 94931583 94931583 C T PON1 Nonsense_Mutation p.W281* 0.17 TCGA-BF-AAP2-01 7 98602755 98602755 T C TRRAP Missense_Mutation p.F3499L 0.40 probably_damaging(0.999) TCGA-BF-AAP2-01 7 99308381 99308381 C T CYP3A7 Missense_Mutation p.E334K 0.40 deleterious(0.02) possibly_damaging(0.852) TCGA-BF-AAP2-01 7 99580934 99580934 G A AZGP1P1 RNA 0.19 TCGA-BF-AAP2-01 8 103277498 103277498 G A UBR5 Silent p.N2477N 0.55 TCGA-BF-AAP2-01 8 10468847 10468847 C T RP1L1 Missense_Mutation p.G921R 0.58 benign(0.001) TCGA-BF-AAP2-01 8 105436532 105436532 C T DPYS Missense_Mutation p.G393E 0.17 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 8 10583503 10583503 G A SOX7 Silent p.S356S 0.17 TCGA-BF-AAP2-01 8 107773107 107773107 C T ABRA 3'UTR 0.38 TCGA-BF-AAP2-01 8 110408266 110408266 G A PKHD1L1 Missense_Mutation p.M274I 0.50 tolerated(0.25) benign(0.003) TCGA-BF-AAP2-01 8 110413811 110413811 G A PKHD1L1 Missense_Mutation p.G456E 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP2-01 8 113702173 113702173 C T CSMD3 Silent p.G693G 0.40 TCGA-BF-AAP2-01 8 114031316 114031316 C T CSMD3 Missense_Mutation p.G337E 0.41 deleterious(0) probably_damaging(0.976) TCGA-BF-AAP2-01 8 114031317 114031317 C A CSMD3 Nonsense_Mutation p.G337* 0.42 TCGA-BF-AAP2-01 8 11407739 11407739 C T BLK Missense_Mutation p.S147F 0.65 deleterious(0.01) probably_damaging(0.943) TCGA-BF-AAP2-01 8 11412349 11412349 C T BLK Silent p.S190S 0.24 TCGA-BF-AAP2-01 8 120612932 120612932 G A ENPP2 Missense_Mutation p.P320S 0.07 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 8 124665010 124665010 C T KLHL38 Missense_Mutation p.A53T 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-BF-AAP2-01 8 124797966 124797966 C T FAM91A1 Missense_Mutation p.S316F 0.14 deleterious(0.01) possibly_damaging(0.865) TCGA-BF-AAP2-01 8 124799992 124799992 T C FAM91A1 Splice_Site p.X426_splice 0.20 TCGA-BF-AAP2-01 8 126085410 126085410 G A KIAA0196 Missense_Mutation p.H379Y 0.35 deleterious(0) probably_damaging(0.917) TCGA-BF-AAP2-01 8 132002765 132002765 G A ADCY8 Silent p.F328F 0.21 TCGA-BF-AAP2-01 8 133036805 133036805 C T OC90 Missense_Mutation p.E453K 0.14 tolerated(0.58) possibly_damaging(0.487) TCGA-BF-AAP2-01 8 135614003 135614003 G A ZFAT Silent p.P653P 0.40 TCGA-BF-AAP2-01 8 139209912 139209912 C T FAM135B Missense_Mutation p.G224R 0.41 deleterious(0) possibly_damaging(0.655) TCGA-BF-AAP2-01 8 143436021 143436021 G A TSNARE1 Missense_Mutation p.S22L 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-BF-AAP2-01 8 143994093 143994093 G A CYP11B2 Silent p.F417F 0.33 TCGA-BF-AAP2-01 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.61 deleterious(0) probably_damaging(0.933) TCGA-BF-AAP2-01 8 144940440 144940440 C T EPPK1 Missense_Mutation p.D2328N 0.04 benign(0.343) TCGA-BF-AAP2-01 8 144946716 144946716 G A EPPK1 Missense_Mutation p.R236C 0.31 possibly_damaging(0.613) TCGA-BF-AAP2-01 8 145094893 145094893 G A SPATC1 Missense_Mutation p.E99K 0.35 deleterious(0) benign(0.057) TCGA-BF-AAP2-01 8 145111950 145111950 G A OPLAH Missense_Mutation p.S536F 0.31 deleterious(0.04) benign(0.009) TCGA-BF-AAP2-01 8 145584721 145584721 C T SLC52A2 3'UTR 0.46 TCGA-BF-AAP2-01 8 145700241 145700241 G A FOXH1 Missense_Mutation p.P160S 0.37 tolerated(0.19) benign(0.003) TCGA-BF-AAP2-01 8 146003535 146003535 G A ZNF34 Silent p.F37F 0.24 TCGA-BF-AAP2-01 8 17402077 17402077 C T SLC7A2 Missense_Mutation p.P205L 0.13 deleterious(0.05) possibly_damaging(0.781) TCGA-BF-AAP2-01 8 19192365 19192365 C T SH2D4A Silent p.I170I 0.69 TCGA-BF-AAP2-01 8 2000403 2000403 G A MYOM2 Missense_Mutation p.E79K 0.73 tolerated(0.37) benign(0.03) TCGA-BF-AAP2-01 8 20107167 20107167 G A LZTS1 3'UTR 0.21 TCGA-BF-AAP2-01 8 2041885 2041885 G A MYOM2 Missense_Mutation p.E698K 0.48 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 8 21834015 21834015 C T XPO7 Missense_Mutation p.P249L 0.76 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP2-01 8 22138917 22138917 C T PIWIL2 Missense_Mutation p.S105F 0.10 tolerated_low_confidence(0.13) benign(0.001) TCGA-BF-AAP2-01 8 22432334 22432334 C T SORBS3 3'UTR 0.66 TCGA-BF-AAP2-01 8 22465536 22465536 T G CCAR2 Missense_Mutation p.F181C 0.43 tolerated(0.14) possibly_damaging(0.907) TCGA-BF-AAP2-01 8 23186012 23186012 C T LOXL2 Missense_Mutation p.G345R 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-BF-AAP2-01 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.20 TCGA-BF-AAP2-01 8 25708124 25708124 C T EBF2 Missense_Mutation p.G561E 0.17 deleterious_low_confidence(0) benign(0.182) TCGA-BF-AAP2-01 8 25708125 25708125 C T EBF2 Missense_Mutation p.G561R 0.18 deleterious_low_confidence(0.02) benign(0.322) TCGA-BF-AAP2-01 8 25766052 25766052 G A EBF2 Missense_Mutation p.L191F 0.37 deleterious(0.02) probably_damaging(0.98) TCGA-BF-AAP2-01 8 27528432 27528432 C T SCARA3 Missense_Mutation p.P462L 0.11 deleterious(0) possibly_damaging(0.908) TCGA-BF-AAP2-01 8 27884514 27884514 G A NUGGC Missense_Mutation p.S737L 0.37 tolerated(1) benign(0.006) TCGA-BF-AAP2-01 8 2967696 2967696 C T CSMD1 Missense_Mutation p.D2198N 0.80 probably_damaging(0.998) TCGA-BF-AAP2-01 8 30706271 30706271 G A TEX15 Missense_Mutation p.S88L 0.35 tolerated(0.27) possibly_damaging(0.452) TCGA-BF-AAP2-01 8 3216769 3216769 G A CSMD1 Missense_Mutation p.S1070F 0.17 possibly_damaging(0.741) TCGA-BF-AAP2-01 8 35544191 35544191 G A UNC5D Missense_Mutation p.E350K 0.22 tolerated(0.08) possibly_damaging(0.489) TCGA-BF-AAP2-01 8 38854619 38854619 C T ADAM9 Missense_Mutation p.R13C 0.58 tolerated_low_confidence(0.2) benign(0.001) TCGA-BF-AAP2-01 8 39103614 39103614 C T ADAM32 Missense_Mutation p.R611C 0.45 tolerated(0.16) possibly_damaging(0.735) TCGA-BF-AAP2-01 8 39442803 39442803 G A ADAM18 Missense_Mutation p.G22R 0.39 tolerated(0.33) benign(0.027) TCGA-BF-AAP2-01 8 39525624 39525624 G A ADAM18 Silent p.L478L 0.10 TCGA-BF-AAP2-01 8 42587427 42587427 C T CHRNB3 Missense_Mutation p.S326F 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-BF-AAP2-01 8 52339295 52339295 G A PXDNL Missense_Mutation p.P517S 0.54 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP2-01 8 55533548 55533548 G A RP1 Missense_Mutation p.G8S 0.29 tolerated(1) benign(0) TCGA-BF-AAP2-01 8 57353911 57353911 G A PENK Missense_Mutation p.P242S 0.46 tolerated(0.08) benign(0.213) TCGA-BF-AAP2-01 8 67086816 67086816 C T TRIM55 Silent p.S545S 0.29 TCGA-BF-AAP2-01 8 67086838 67086838 C T TRIM55 3'UTR 0.51 TCGA-BF-AAP2-01 8 69380983 69380983 G A C8orf34 Missense_Mutation p.D222N 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-BF-AAP2-01 8 70674021 70674021 G A SLCO5A1 Missense_Mutation p.P333S 0.34 tolerated(0.83) benign(0.02) TCGA-BF-AAP2-01 8 70964268 70964268 C A PRDM14 3'UTR 0.25 TCGA-BF-AAP2-01 8 77765850 77765850 G A ZFHX4 Silent p.T2231T 0.35 TCGA-BF-AAP2-01 8 86049719 86049719 C T LRRCC1 Missense_Mutation p.R784C 0.46 deleterious(0.01) benign(0.081) TCGA-BF-AAP2-01 8 86392944 86392944 G A CA2 Missense_Mutation p.E237K 0.17 tolerated(0.55) benign(0.036) TCGA-BF-AAP2-01 8 87165116 87165116 G A ATP6V0D2 Silent p.K321K 0.37 TCGA-BF-AAP2-01 8 88885184 88885184 C T DCAF4L2 Missense_Mutation p.R339K 0.39 deleterious(0.04) possibly_damaging(0.816) TCGA-BF-AAP2-01 8 92365218 92365218 C T SLC26A7 Silent p.I436I 0.27 TCGA-BF-AAP2-01 8 99105504 99105504 G A C8orf47 Silent p.G356G 0.14 TCGA-BF-AAP2-01 9 101759258 101759258 C T COL15A1 Missense_Mutation p.P283S 0.48 tolerated(0.85) benign(0.007) TCGA-BF-AAP2-01 9 104133228 104133228 G A BAAT Silent p.L153L 0.26 TCGA-BF-AAP2-01 9 104432346 104432346 G A GRIN3A Missense_Mutation p.P783L 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 9 107331715 107331715 G A OR13C8 Silent p.K89K 0.45 TCGA-BF-AAP2-01 9 111642342 111642342 C T IKBKAP Silent p.Q1150Q 0.09 TCGA-BF-AAP2-01 9 113170290 113170290 G A SVEP1 Silent p.L2530L 0.36 TCGA-BF-AAP2-01 9 113449528 113449528 G A MUSK Missense_Mutation p.G113E 0.34 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-BF-AAP2-01 9 113530098 113530098 A T MUSK Splice_Site p.X307_splice 0.24 TCGA-BF-AAP2-01 9 114090564 114090564 G A OR2K2 Silent p.I50I 0.18 TCGA-BF-AAP2-01 9 114305452 114305452 C T ZNF483 3'UTR 0.58 TCGA-BF-AAP2-01 9 114904699 114904699 G A SUSD1 Missense_Mutation p.R203C 0.30 tolerated(0.13) probably_damaging(0.97) TCGA-BF-AAP2-01 9 115805372 115805372 C T ZFP37 Missense_Mutation p.R509K 0.18 tolerated(0.31) benign(0.331) TCGA-BF-AAP2-01 9 117552943 117552943 G A TNFSF15 Missense_Mutation p.T182I 0.28 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP2-01 9 119065109 119065109 G A PAPPA Silent p.K1009K 0.32 TCGA-BF-AAP2-01 9 121929824 121929824 C T BRINP1 Nonsense_Mutation p.W608* 0.40 TCGA-BF-AAP2-01 9 128099781 128099781 C T GAPVD1 Missense_Mutation p.P957S 0.19 tolerated_low_confidence(0.16) benign(0.001) TCGA-BF-AAP2-01 9 129246303 129246303 G A MVB12B Missense_Mutation p.E289K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP2-01 9 130912726 130912726 G A LCN2 Intron 0.20 TCGA-BF-AAP2-01 9 131115449 131115449 C T SLC27A4 Missense_Mutation p.P378L 0.27 deleterious(0.04) benign(0.426) TCGA-BF-AAP2-01 9 131271296 131271296 C T GLE1 Nonsense_Mutation p.Q81* 0.12 TCGA-BF-AAP2-01 9 131588340 131588340 C T C9orf114 Silent p.R200R 0.24 TCGA-BF-AAP2-01 9 131588341 131588341 C T C9orf114 Missense_Mutation p.R200Q 0.25 deleterious(0.03) benign(0.017) TCGA-BF-AAP2-01 9 134459776 134459776 G A RAPGEF1 Silent p.F944F 0.36 TCGA-BF-AAP2-01 9 136507452 136507452 G A DBH Missense_Mutation p.E204K 0.16 tolerated(0.97) benign(0.001) TCGA-BF-AAP2-01 9 136913559 136913559 C A BRD3 Silent p.R244R 0.44 TCGA-BF-AAP2-01 9 138518012 138518012 G A GLT6D1 Missense_Mutation p.P54S 0.39 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP2-01 9 139360496 139360496 G A SEC16A Silent p.T1407T 0.42 TCGA-BF-AAP2-01 9 139368625 139368625 G A SEC16A Missense_Mutation p.A1148V 0.30 tolerated(0.18) benign(0.022) TCGA-BF-AAP2-01 9 139911574 139911574 G A ABCA2 Silent p.S852S 0.09 TCGA-BF-AAP2-01 9 139911575 139911575 G A ABCA2 Missense_Mutation p.S852F 0.09 deleterious(0) possibly_damaging(0.859) TCGA-BF-AAP2-01 9 139944968 139944968 C T ENTPD2 Nonsense_Mutation p.W266* 0.25 TCGA-BF-AAP2-01 9 140130526 140130526 G A SLC34A3 Nonsense_Mutation p.W486* 0.46 TCGA-BF-AAP2-01 9 141016328 141016328 C T CACNA1B Silent p.S2299S 0.42 TCGA-BF-AAP2-01 9 19346858 19346858 C T DENND4C Missense_Mutation p.P1315L 0.60 tolerated(0.21) benign(0.007) TCGA-BF-AAP2-01 9 21166048 21166048 C T IFNA21 Silent p.K188K 0.64 TCGA-BF-AAP2-01 9 32448913 32448913 C T ACO1 Missense_Mutation p.A797V 0.47 deleterious(0) possibly_damaging(0.894) TCGA-BF-AAP2-01 9 35045604 35045604 A G C9orf131 Missense_Mutation p.Q993R 0.58 tolerated(0.11) probably_damaging(0.986) TCGA-BF-AAP2-01 9 36356355 36356355 G A RNF38 Missense_Mutation p.P285L 0.58 deleterious(0) benign(0.341) TCGA-BF-AAP2-01 9 38577896 38577896 C T ANKRD18A Missense_Mutation p.E833K 0.56 tolerated(0.23) benign(0) TCGA-BF-AAP2-01 9 5805118 5805118 G A ERMP1 Missense_Mutation p.P608L 0.62 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 9 67938649 67938649 G A ANKRD20A1 Missense_Mutation p.E262K 0.36 tolerated(0.79) benign(0.001) TCGA-BF-AAP2-01 9 74863326 74863326 G A GDA Intron 0.32 TCGA-BF-AAP2-01 9 75774249 75774249 G A ANXA1 Silent p.V60V 0.45 TCGA-BF-AAP2-01 9 78804577 78804577 C T PCSK5 Silent p.G847G 0.12 TCGA-BF-AAP2-01 9 78973852 78973852 C T PCSK5 3'UTR 0.26 TCGA-BF-AAP2-01 9 79318553 79318553 G A PRUNE2 Missense_Mutation p.T2659I 0.35 tolerated(0.09) benign(0.198) TCGA-BF-AAP2-01 9 79321897 79321897 C T PRUNE2 Missense_Mutation p.D1765N 0.10 tolerated(0.09) benign(0.037) TCGA-BF-AAP2-01 9 79834875 79834875 C T VPS13A Missense_Mutation p.R254C 0.37 deleterious(0) possibly_damaging(0.816) TCGA-BF-AAP2-01 9 8436657 8436657 C T PTPRD Missense_Mutation p.E1341K 0.48 deleterious(0.01) probably_damaging(0.926) TCGA-BF-AAP2-01 9 84608245 84608245 G A SPATA31D1 Missense_Mutation p.G954R 0.26 tolerated(0.62) benign(0.257) TCGA-BF-AAP2-01 9 8484266 8484266 C T PTPRD Missense_Mutation p.G1089E 0.25 tolerated(0.13) probably_damaging(0.999) TCGA-BF-AAP2-01 9 88247766 88247766 G A AGTPBP1 Missense_Mutation p.S569L 0.43 tolerated(0.08) benign(0.187) TCGA-BF-AAP2-01 9 90343020 90343020 G A CTSL Missense_Mutation p.G69R 0.06 deleterious(0.01) possibly_damaging(0.448) TCGA-BF-AAP2-01 9 93639890 93639890 G A SYK Missense_Mutation p.E407K 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP2-01 9 94487089 94487089 C T ROR2 Missense_Mutation p.E563K 0.37 deleterious(0) probably_damaging(1) TCGA-BF-AAP2-01 9 95773515 95773515 C T FGD3 Silent p.S332S 0.26 TCGA-BF-AAP2-01 9 96009878 96009878 C T WNK2 Silent p.I532I 0.57 TCGA-BF-AAP2-01 9 97063663 97063663 C T ZNF169 3'UTR 0.73 TCGA-BF-AAP2-01 9 99150666 99150666 C T ZNF367 Silent p.Q302Q 0.46 TCGA-BF-AAP2-01 9 99838864 99838864 G A RP11-520B13.4 RNA 0.30 TCGA-BF-AAP2-01 9 99838865 99838865 G A RP11-520B13.4 RNA 0.30 TCGA-BF-AAP2-01 X 101092587 101092587 C T NXF5 Missense_Mutation p.R320Q 0.83 tolerated(0.32) benign(0) TCGA-BF-AAP2-01 X 102564500 102564500 C T BEX2 3'UTR 0.79 TCGA-BF-AAP2-01 X 105189986 105189986 C T NRK Silent p.L1395L 0.76 TCGA-BF-AAP2-01 X 106038927 106038927 G A RNF128 Missense_Mutation p.R424Q 0.82 tolerated_low_confidence(0.39) benign(0.001) TCGA-BF-AAP2-01 X 107938557 107938557 G A COL4A5 Missense_Mutation p.E1628K 0.27 probably_damaging(0.994) TCGA-BF-AAP2-01 X 109696961 109696961 C T RGAG1 Missense_Mutation p.S1039L 0.23 tolerated(0.36) benign(0.007) TCGA-BF-AAP2-01 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.52 deleterious(0) probably_damaging(0.945) TCGA-BF-AAP2-01 X 111698666 111698666 C T ZCCHC16 Missense_Mutation p.S237F 0.82 tolerated(0.08) benign(0.091) TCGA-BF-AAP2-01 X 118284503 118284503 G A KIAA1210 Missense_Mutation p.H14Y 0.85 tolerated_low_confidence(0.08) benign(0.012) TCGA-BF-AAP2-01 X 119048712 119048712 G A AKAP14 Silent p.R104R 0.11 TCGA-BF-AAP2-01 X 12720106 12720106 G A FRMPD4 Silent p.Q349Q 0.89 TCGA-BF-AAP2-01 X 12906842 12906842 C T TLR7 3'UTR 0.90 TCGA-BF-AAP2-01 X 134683671 134683671 C T DDX26B Missense_Mutation p.P283S 0.84 tolerated(0.1) probably_damaging(0.979) TCGA-BF-AAP2-01 X 134856771 134856771 G A CT45A1 Silent p.K182K 0.06 TCGA-BF-AAP2-01 X 134990741 134990741 G A SAGE1 Missense_Mutation p.G469E 0.28 tolerated(0.08) benign(0.033) TCGA-BF-AAP2-01 X 135428216 135428216 C T GPR112 Missense_Mutation p.P784L 0.85 tolerated(0.07) benign(0.026) TCGA-BF-AAP2-01 X 135631108 135631108 C T VGLL1 Missense_Mutation p.P192L 0.45 tolerated(0.09) benign(0.257) TCGA-BF-AAP2-01 X 139038215 139038215 G A CXorf66 Missense_Mutation p.S309F 0.27 tolerated(0.07) probably_damaging(0.919) TCGA-BF-AAP2-01 X 14038240 14038240 G A GEMIN8 Silent p.L143L 0.87 TCGA-BF-AAP2-01 X 140996029 140996029 C T MAGEC1 Missense_Mutation p.P947S 0.84 deleterious(0.02) unknown(0) TCGA-BF-AAP2-01 X 154194301 154194301 G A F8 Missense_Mutation p.H463Y 0.88 tolerated(1) benign(0.002) TCGA-BF-AAP2-01 X 154227847 154227847 G A F8 Missense_Mutation p.P58S 0.82 deleterious(0.05) possibly_damaging(0.869) TCGA-BF-AAP2-01 X 16170851 16170851 C T GRPR 3'UTR 0.88 TCGA-BF-AAP2-01 X 1755390 1755390 C T ASMT Missense_Mutation p.H283Y 0.57 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP2-01 X 19031983 19031983 G A GPR64 Missense_Mutation p.S307L 0.88 tolerated_low_confidence(0.05) benign(0.018) TCGA-BF-AAP2-01 X 26212441 26212441 G A MAGEB6 Missense_Mutation p.G160S 0.11 tolerated(0.06) benign(0.198) TCGA-BF-AAP2-01 X 2640688 2640688 C T CD99 Missense_Mutation p.L95F 0.16 deleterious(0.01) probably_damaging(0.966) TCGA-BF-AAP2-01 X 2931173 2931173 C T ARSH Silent p.A100A 0.42 TCGA-BF-AAP2-01 X 2994617 2994617 G A ARSF Missense_Mutation p.E64K 0.55 deleterious(0.04) possibly_damaging(0.904) TCGA-BF-AAP2-01 X 30269170 30269170 G A MAGEB1 Missense_Mutation p.G187E 0.67 tolerated(0.16) benign(0.196) TCGA-BF-AAP2-01 X 49065080 49065080 C T CACNA1F Missense_Mutation p.G1684E 0.67 tolerated(0.2) benign(0.002) TCGA-BF-AAP2-01 X 50351134 50351134 G A SHROOM4 Missense_Mutation p.P1003L 0.38 deleterious(0.01) benign(0.365) TCGA-BF-AAP2-01 X 52825576 52825576 C T SPANXN5 Silent p.R57R 0.80 TCGA-BF-AAP2-01 X 53279874 53279874 G A IQSEC2 Silent p.P628P 0.22 TCGA-BF-AAP2-01 X 57458437 57458437 C T FAAH2 Silent p.I361I 0.81 TCGA-BF-AAP2-01 X 5811671 5811671 G A NLGN4X Silent p.F546F 0.86 TCGA-BF-AAP2-01 X 65390540 65390540 G A HEPH Missense_Mutation p.G97E 0.90 deleterious(0.04) possibly_damaging(0.87) TCGA-BF-AAP2-01 X 69712059 69712059 T G DLG3 Missense_Mutation p.D541E 0.88 tolerated(0.17) benign(0.122) TCGA-BF-AAP2-01 X 69712078 69712078 C T DLG3 Silent p.L548L 0.82 TCGA-BF-AAP2-01 X 70387242 70387242 C T NLGN3 Missense_Mutation p.S432F 0.47 deleterious(0.02) possibly_damaging(0.808) TCGA-BF-AAP2-01 X 73961009 73961009 C T KIAA2022 Missense_Mutation p.G1128E 0.83 tolerated(0.06) benign(0.05) TCGA-BF-AAP2-01 X 73962094 73962094 C T KIAA2022 Silent p.G766G 0.78 TCGA-BF-AAP2-01 X 73962149 73962149 G A KIAA2022 Missense_Mutation p.P748L 0.85 deleterious(0) possibly_damaging(0.881) TCGA-BF-AAP2-01 X 76711865 76711865 G A FGF16 Missense_Mutation p.R68K 0.97 benign(0.004) TCGA-BF-AAP2-01 X 76939187 76939187 G A ATRX Missense_Mutation p.P521S 0.88 probably_damaging(0.998) TCGA-BF-AAP2-01 X 78010679 78010679 C T LPAR4 Missense_Mutation p.P105S 0.80 deleterious(0) probably_damaging(0.968) TCGA-BF-AAP2-01 X 83129616 83129616 C T CYLC1 Missense_Mutation p.P634S 0.81 deleterious(0.02) benign(0.14) TCGA-BF-AAP2-01 X 83400549 83400549 C T RPS6KA6 Silent p.G146G 0.77 TCGA-BF-AAP2-01 X 86877265 86877265 G A KLHL4 Missense_Mutation p.E327K 0.88 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP2-01 Y 15471035 15471035 T G UTY Intron 0.83 TCGA-BF-AAP2-01 Y 3447448 3447448 G C TGIF2LY Missense_Mutation p.G55R 0.65 deleterious(0) possibly_damaging(0.546) TCGA-BF-AAP4-01 10 104128505 104128505 C T GBF1 Silent p.A962A 0.15 TCGA-BF-AAP4-01 10 105648867 105648867 G A OBFC1 Silent p.I304I 0.16 TCGA-BF-AAP4-01 10 112764510 112764510 A G SHOC2 Silent p.G373G 0.20 TCGA-BF-AAP4-01 10 115486183 115486183 C T CASP7 Silent p.S257S 0.15 TCGA-BF-AAP4-01 10 116307409 116307409 T C ABLIM1 Missense_Mutation p.K267R 0.18 tolerated(0.06) probably_damaging(0.958) TCGA-BF-AAP4-01 10 124377595 124377595 G A DMBT1 Missense_Mutation p.E1523K 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 10 124746407 124746407 C T PSTK Missense_Mutation p.S269L 0.35 deleterious(0) possibly_damaging(0.889) TCGA-BF-AAP4-01 10 124922198 124922198 C T BUB3 Silent p.Y275Y 0.07 TCGA-BF-AAP4-01 10 126311716 126311716 C T FAM53B 3'UTR 0.19 TCGA-BF-AAP4-01 10 126370768 126370768 G A FAM53B Missense_Mutation p.P105L 0.44 deleterious(0.02) probably_damaging(0.918) TCGA-BF-AAP4-01 10 132944830 132944830 G A TCERG1L Silent p.R376R 0.31 TCGA-BF-AAP4-01 10 135097464 135097464 G A TUBGCP2 Silent p.F717F 0.18 TCGA-BF-AAP4-01 10 15103764 15103764 G A OLAH Missense_Mutation p.E122K 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 10 15115237 15115237 C T OLAH 3'UTR 0.17 TCGA-BF-AAP4-01 10 16526407 16526407 C T PTER Silent p.V8V 0.06 TCGA-BF-AAP4-01 10 24873891 24873891 G A ARHGAP21 Missense_Mutation p.P1776L 0.18 deleterious(0.04) benign(0.012) TCGA-BF-AAP4-01 10 25886964 25886964 G A GPR158 Silent p.K803K 0.31 TCGA-BF-AAP4-01 10 26463382 26463382 C T MYO3A Missense_Mutation p.P1397S 0.12 tolerated_low_confidence(0.44) benign(0.001) TCGA-BF-AAP4-01 10 28196681 28196681 G A ARMC4 Missense_Mutation p.R841C 0.15 deleterious(0.01) possibly_damaging(0.759) TCGA-BF-AAP4-01 10 30315708 30315708 G A KIAA1462 Silent p.S1123S 0.22 TCGA-BF-AAP4-01 10 31134230 31134230 G A ZNF438 Missense_Mutation p.S716F 0.21 tolerated(0.47) possibly_damaging(0.837) TCGA-BF-AAP4-01 10 37422902 37422902 C T ANKRD30A Nonsense_Mutation p.Q170* 0.22 TCGA-BF-AAP4-01 10 3822362 3822362 C T KLF6 Missense_Mutation p.E246K 0.12 deleterious(0) benign(0.252) TCGA-BF-AAP4-01 10 428607 428607 G A DIP2C Silent p.A657A 0.20 TCGA-BF-AAP4-01 10 46967612 46967612 C T SYT15 Silent p.V155V 0.06 TCGA-BF-AAP4-01 10 50122262 50122262 G A LRRC18 5'UTR 0.13 TCGA-BF-AAP4-01 10 51464823 51464823 G A AGAP7 Missense_Mutation p.R545C 0.18 deleterious(0.02) benign(0.188) TCGA-BF-AAP4-01 10 52575880 52575880 C T A1CF Missense_Mutation p.G351R 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 10 5416106 5416106 G A UCN3 Silent p.K141K 0.15 TCGA-BF-AAP4-01 10 5436212 5436212 C T TUBAL3 Silent p.E203E 0.10 TCGA-BF-AAP4-01 10 5437388 5437388 G A TUBAL3 Missense_Mutation p.L100F 0.39 deleterious_low_confidence(0) benign(0.01) TCGA-BF-AAP4-01 10 5497065 5497065 G A NET1 Missense_Mutation p.R394Q 0.18 deleterious(0.02) possibly_damaging(0.57) TCGA-BF-AAP4-01 10 55570420 55570420 C T PCDH15 Missense_Mutation p.E1467K 0.21 benign(0.045) TCGA-BF-AAP4-01 10 63851834 63851834 C T ARID5B Missense_Mutation p.P871L 0.34 tolerated(0.39) benign(0.076) TCGA-BF-AAP4-01 10 70451303 70451303 T A TET1 Missense_Mutation p.F2048Y 0.27 tolerated(0.05) benign(0.211) TCGA-BF-AAP4-01 10 71008270 71008270 G A HKDC1 Silent p.G452G 0.09 TCGA-BF-AAP4-01 10 71160899 71160899 G A HK1 3'Flank 0.25 TCGA-BF-AAP4-01 10 75003156 75003156 C T DNAJC9 3'UTR 0.14 TCGA-BF-AAP4-01 10 75525575 75525575 C T SEC24C Nonsense_Mutation p.Q462* 0.17 TCGA-BF-AAP4-01 10 78868263 78868263 G A KCNMA1 Missense_Mutation p.S400F 0.16 deleterious(0.02) possibly_damaging(0.674) TCGA-BF-AAP4-01 10 94239169 94239169 A C IDE Silent p.A583A 0.08 TCGA-BF-AAP4-01 10 95791708 95791708 A T PLCE1 Missense_Mutation p.D302V 0.11 deleterious_low_confidence(0) benign(0.221) TCGA-BF-AAP4-01 10 96066291 96066291 C T PLCE1 Silent p.P1910P 0.11 TCGA-BF-AAP4-01 11 10785189 10785189 G A CTR9 Splice_Site p.X320_splice 0.49 TCGA-BF-AAP4-01 11 120838010 120838010 G A GRIK4 Silent p.K791K 0.55 TCGA-BF-AAP4-01 11 122647792 122647792 C T UBASH3B Silent p.L92L 0.23 TCGA-BF-AAP4-01 11 123624432 123624432 G A OR6X1 Silent p.S265S 0.45 TCGA-BF-AAP4-01 11 123988899 123988899 C T VWA5A Missense_Mutation p.R84C 0.26 deleterious(0.02) benign(0.22) TCGA-BF-AAP4-01 11 128781858 128781858 G A KCNJ5 Silent p.V230V 0.21 TCGA-BF-AAP4-01 11 128844402 128844402 A T ARHGAP32 Missense_Mutation p.F883Y 0.21 tolerated(0.2) benign(0.052) TCGA-BF-AAP4-01 11 132290078 132290078 G A OPCML 3'UTR 0.24 TCGA-BF-AAP4-01 11 16010577 16010577 G A SOX6 Silent p.P624P 0.39 TCGA-BF-AAP4-01 11 1629612 1629612 C T KRTAP5-3 Missense_Mutation p.G2S 0.15 deleterious_low_confidence(0) unknown(0) TCGA-BF-AAP4-01 11 19077338 19077338 G A MRGPRX2 Silent p.A204A 0.19 TCGA-BF-AAP4-01 11 19077339 19077339 G C MRGPRX2 Missense_Mutation p.A204G 0.19 deleterious(0) benign(0.213) TCGA-BF-AAP4-01 11 24784789 24784789 C T LUZP2 Intron 0.45 TCGA-BF-AAP4-01 11 25004683 25004683 G A LUZP2 Missense_Mutation p.M203I 0.20 tolerated(0.06) benign(0) TCGA-BF-AAP4-01 11 26558963 26558963 A G ANO3 Silent p.K329K 0.22 TCGA-BF-AAP4-01 11 27114876 27114876 G A BBOX1 Missense_Mutation p.G166R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP4-01 11 36615204 36615204 C T RAG2 Nonsense_Mutation p.W172* 0.47 TCGA-BF-AAP4-01 11 46911659 46911659 G A LRP4 Missense_Mutation p.P643L 0.13 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 11 4869932 4869932 G A OR51S1 Silent p.F169F 0.13 TCGA-BF-AAP4-01 11 4968054 4968054 C T OR51A4 Missense_Mutation p.E93K 0.13 tolerated(0.1) benign(0.033) TCGA-BF-AAP4-01 11 5172737 5172737 G A OR52A1 Missense_Mutation p.P288L 0.16 deleterious(0) possibly_damaging(0.548) TCGA-BF-AAP4-01 11 5462408 5462408 C T OR51I1 Missense_Mutation p.E113K 0.53 deleterious(0.01) probably_damaging(0.993) TCGA-BF-AAP4-01 11 55655524 55655524 G A TRIM51 Missense_Mutation p.R175K 0.20 tolerated(0.06) possibly_damaging(0.665) TCGA-BF-AAP4-01 11 55890672 55890672 C T OR8H3 Missense_Mutation p.P275L 0.50 deleterious(0) benign(0.033) TCGA-BF-AAP4-01 11 56128148 56128148 C T OR8J1 Silent p.L142L 0.56 TCGA-BF-AAP4-01 11 57369633 57369633 C T SERPING1 Missense_Mutation p.H226Y 0.19 tolerated(0.15) possibly_damaging(0.475) TCGA-BF-AAP4-01 11 59626682 59626682 C T TCN1 Silent p.G205G 0.10 TCGA-BF-AAP4-01 11 60154243 60154243 C T MS4A7 Silent p.P112P 0.17 TCGA-BF-AAP4-01 11 63057779 63057779 C T SLC22A10 Missense_Mutation p.R48C 0.20 deleterious(0.02) benign(0.317) TCGA-BF-AAP4-01 11 6519463 6519463 G A DNHD1 Silent p.R6R 0.25 TCGA-BF-AAP4-01 11 66191687 66191687 G A NPAS4 Silent p.E442E 0.27 TCGA-BF-AAP4-01 11 70333644 70333644 C T SHANK2 Silent p.G919G 0.45 TCGA-BF-AAP4-01 11 73676018 73676018 C T DNAJB13 Missense_Mutation p.L144F 0.40 deleterious(0) benign(0.132) TCGA-BF-AAP4-01 11 78380487 78380487 G A TENM4 Silent p.S2301S 0.22 TCGA-BF-AAP4-01 11 78399209 78399209 C T TENM4 Missense_Mutation p.R1717Q 0.15 deleterious(0.05) benign(0.18) TCGA-BF-AAP4-01 12 103246679 103246679 C T PAH Silent p.R252R 0.21 TCGA-BF-AAP4-01 12 111352003 111352003 C T MYL2 Silent p.G87G 0.11 TCGA-BF-AAP4-01 12 113545955 113545955 G A RASAL1 Silent p.L484L 0.48 TCGA-BF-AAP4-01 12 11461438 11461438 C T PRB4 Missense_Mutation p.G160E 0.18 tolerated_low_confidence(0.18) unknown(0) TCGA-BF-AAP4-01 12 116972645 116972645 G A LINC00173 RNA 0.12 TCGA-BF-AAP4-01 12 117513077 117513077 G A TESC Missense_Mutation p.R43C 0.22 deleterious(0) probably_damaging(0.911) TCGA-BF-AAP4-01 12 118533483 118533483 G A VSIG10 Silent p.S72S 0.26 TCGA-BF-AAP4-01 12 122404888 122404888 T C WDR66 Silent p.G840G 0.14 TCGA-BF-AAP4-01 12 123070301 123070301 C T KNTC1 Missense_Mutation p.S1218L 0.22 deleterious(0) probably_damaging(0.966) TCGA-BF-AAP4-01 12 124298346 124298346 C T DNAH10 Missense_Mutation p.L1105F 0.15 benign(0.101) TCGA-BF-AAP4-01 12 125455889 125455889 G A DHX37 Missense_Mutation p.L384F 0.15 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP4-01 12 125509720 125509720 C T BRI3BP Missense_Mutation p.S167F 0.13 deleterious(0) probably_damaging(0.97) TCGA-BF-AAP4-01 12 129431940 129431940 G A GLT1D1 Silent p.V159V 0.17 TCGA-BF-AAP4-01 12 129566452 129566452 C T TMEM132D Missense_Mutation p.G592E 0.17 tolerated(0.05) benign(0.209) TCGA-BF-AAP4-01 12 129569212 129569212 C T TMEM132D Silent p.G493G 0.21 TCGA-BF-AAP4-01 12 16704096 16704096 G A LMO3 3'UTR 0.20 TCGA-BF-AAP4-01 12 1749046 1749046 T A WNT5B Missense_Mutation p.F175L 0.19 tolerated(0.05) benign(0.052) TCGA-BF-AAP4-01 12 21175795 21175795 G A SLCO1B7 Missense_Mutation p.E118K 0.17 deleterious(0.02) benign(0.379) TCGA-BF-AAP4-01 12 21598304 21598304 C T PYROXD1 Silent p.F63F 0.12 TCGA-BF-AAP4-01 12 21715939 21715939 G A GYS2 Silent p.F325F 0.14 TCGA-BF-AAP4-01 12 25380274 25380274 C T KRAS Missense_Mutation p.E62K 0.49 deleterious(0.01) possibly_damaging(0.562) TCGA-BF-AAP4-01 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.49 deleterious(0) probably_damaging(0.94) TCGA-BF-AAP4-01 12 31814976 31814976 C T METTL20 Missense_Mutation p.P30L 0.12 tolerated(0.17) possibly_damaging(0.573) TCGA-BF-AAP4-01 12 40265630 40265630 G A SLC2A13 Missense_Mutation p.R390C 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 12 43826554 43826554 C T ADAMTS20 Silent p.L927L 0.35 TCGA-BF-AAP4-01 12 4719424 4719424 C T DYRK4 Silent p.F373F 0.15 TCGA-BF-AAP4-01 12 47628853 47628853 C T PCED1B Missense_Mutation p.L3F 0.33 tolerated(0.2) benign(0.057) TCGA-BF-AAP4-01 12 48375793 48375793 G A COL2A1 Intron 0.29 TCGA-BF-AAP4-01 12 48866504 48866504 G A ANP32D Silent p.V19V 0.13 TCGA-BF-AAP4-01 12 48919973 48919973 C T OR8S1 Silent p.L187L 0.32 TCGA-BF-AAP4-01 12 49255896 49255896 G A RND1 Missense_Mutation p.P72S 0.20 tolerated(0.43) probably_damaging(0.998) TCGA-BF-AAP4-01 12 49314761 49314761 G A CCDC65 Missense_Mutation p.E359K 0.46 deleterious(0) probably_damaging(0.922) TCGA-BF-AAP4-01 12 49412648 49412648 G A PRKAG1 5'Flank 0.45 TCGA-BF-AAP4-01 12 49993449 49993449 C T FAM186B Silent p.K658K 0.33 TCGA-BF-AAP4-01 12 49994064 49994064 G A FAM186B Silent p.L453L 0.13 TCGA-BF-AAP4-01 12 50045923 50045923 G A FMNL3 Nonsense_Mutation p.Q466* 0.16 TCGA-BF-AAP4-01 12 52284687 52284687 C T ANKRD33 Silent p.F319F 0.25 TCGA-BF-AAP4-01 12 52450340 52450340 C T NR4A1 Missense_Mutation p.P370S 0.29 tolerated(0.33) probably_damaging(0.994) TCGA-BF-AAP4-01 12 52450341 52450341 C T NR4A1 Missense_Mutation p.P370L 0.28 tolerated(0.58) probably_damaging(0.996) TCGA-BF-AAP4-01 12 53189547 53189547 C T KRT3 Missense_Mutation p.G94R 0.11 tolerated(0.12) unknown(0) TCGA-BF-AAP4-01 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.20 TCGA-BF-AAP4-01 12 56737642 56737642 C A STAT2 Missense_Mutation p.D794Y 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BF-AAP4-01 12 56818605 56818605 G A TIMELESS Silent p.I603I 0.22 TCGA-BF-AAP4-01 12 57587731 57587731 C T LRP1 Silent p.I2618I 0.17 TCGA-BF-AAP4-01 12 57648650 57648650 G A R3HDM2 Missense_Mutation p.S946F 0.11 tolerated(0.05) probably_damaging(0.998) TCGA-BF-AAP4-01 12 57864255 57864255 C T GLI1 Silent p.L578L 0.10 TCGA-BF-AAP4-01 12 60173516 60173516 C T SLC16A7 3'UTR 0.25 TCGA-BF-AAP4-01 12 65702430 65702430 C T MSRB3 Intron 0.18 TCGA-BF-AAP4-01 12 6753323 6753323 C T ACRBP Nonsense_Mutation p.W308* 0.35 TCGA-BF-AAP4-01 12 6837439 6837439 C T COPS7A Nonsense_Mutation p.R97* 0.23 TCGA-BF-AAP4-01 12 69229615 69229615 G A MDM2 Missense_Mutation p.D231N 0.18 tolerated(0.17) possibly_damaging(0.616) TCGA-BF-AAP4-01 12 7640647 7640647 G A CD163 Missense_Mutation p.P486L 0.12 deleterious(0.04) probably_damaging(0.933) TCGA-BF-AAP4-01 12 80202303 80202303 G T PPP1R12A Silent p.R504R 0.23 TCGA-BF-AAP4-01 12 80717507 80717507 C T OTOGL Silent p.I1353I 0.18 TCGA-BF-AAP4-01 12 80730315 80730315 G A OTOGL Missense_Mutation p.E1566K 0.18 tolerated(0.44) benign(0.389) TCGA-BF-AAP4-01 13 110826853 110826853 C T COL4A1 Missense_Mutation p.E1116K 0.42 probably_damaging(0.991) TCGA-BF-AAP4-01 13 110857711 110857711 G A COL4A1 Nonsense_Mutation p.Q316* 0.35 TCGA-BF-AAP4-01 13 111077303 111077303 G A COL4A2 Missense_Mutation p.A107T 0.31 benign(0.22) TCGA-BF-AAP4-01 13 113743925 113743925 C G MCF2L Missense_Mutation p.P946A 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-BF-AAP4-01 13 113743926 113743926 C T MCF2L Missense_Mutation p.P946L 0.28 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP4-01 13 20763717 20763717 C T GJB2 Missense_Mutation p.D2N 0.17 tolerated(1) benign(0.06) TCGA-BF-AAP4-01 13 25914138 25914138 A G NUPL1 Missense_Mutation p.S556G 0.13 tolerated(0.14) probably_damaging(0.99) TCGA-BF-AAP4-01 13 26621006 26621006 G A SHISA2 Missense_Mutation p.S178L 0.15 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 13 32798457 32798457 A G FRY Silent p.G1617G 0.19 TCGA-BF-AAP4-01 13 33275506 33275506 C T PDS5B Missense_Mutation p.P596L 0.11 tolerated(1) benign(0.236) TCGA-BF-AAP4-01 13 38143956 38143956 G A POSTN Missense_Mutation p.P758S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BF-AAP4-01 13 46563084 46563084 G A ZC3H13 Missense_Mutation p.P365S 0.44 unknown(0) TCGA-BF-AAP4-01 13 52604307 52604307 C T UTP14C Missense_Mutation p.S456F 0.40 deleterious(0.04) benign(0.098) TCGA-BF-AAP4-01 14 102901289 102901289 C T TECPR2 Missense_Mutation p.P712L 0.07 tolerated_low_confidence(0.65) benign(0.007) TCGA-BF-AAP4-01 14 102901290 102901290 C T TECPR2 Silent p.P712P 0.07 TCGA-BF-AAP4-01 14 104379030 104379030 A G C14orf2 Silent p.A67A 0.47 TCGA-BF-AAP4-01 14 106173568 106173568 C A IGHA1 Silent p.A333A 0.18 TCGA-BF-AAP4-01 14 106174754 106174754 C T IGHA1 Silent p.V83V 0.25 TCGA-BF-AAP4-01 14 106307466 106307466 G A IGHD Silent p.F191F 0.31 TCGA-BF-AAP4-01 14 107013044 107013044 G A IGHV3-49 Missense_Mutation p.S84F 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-BF-AAP4-01 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.11 deleterious(0.01) possibly_damaging(0.461) TCGA-BF-AAP4-01 14 20586041 20586041 A G OR4K17 Missense_Mutation p.K159R 0.16 tolerated(0.12) benign(0.401) TCGA-BF-AAP4-01 14 21679529 21679529 C T HNRNPC Intron 0.21 TCGA-BF-AAP4-01 14 21859768 21859768 G A CHD8 Missense_Mutation p.L2307F 0.23 tolerated(0.67) possibly_damaging(0.587) TCGA-BF-AAP4-01 14 21859769 21859769 G A CHD8 Silent p.H2306H 0.23 TCGA-BF-AAP4-01 14 22694866 22694866 G A TRAV36DV7 Silent p.V19V 0.17 TCGA-BF-AAP4-01 14 23416390 23416390 G A HAUS4 Missense_Mutation p.R300C 0.29 tolerated(0.05) possibly_damaging(0.885) TCGA-BF-AAP4-01 14 23848584 23848584 C T CMTM5 Missense_Mutation p.A150V 0.18 tolerated(0.21) benign(0.156) TCGA-BF-AAP4-01 14 23891406 23891406 C T MYH7 Silent p.L1076L 0.12 TCGA-BF-AAP4-01 14 24034382 24034382 G A AP1G2 Silent p.I256I 0.12 TCGA-BF-AAP4-01 14 24035404 24035404 G A AP1G2 Intron 0.23 TCGA-BF-AAP4-01 14 24884581 24884581 C T NYNRIN Missense_Mutation p.P1209L 0.20 tolerated(0.44) probably_damaging(0.999) TCGA-BF-AAP4-01 14 26917658 26917658 G A NOVA1 Missense_Mutation p.A344V 0.40 tolerated(0.64) benign(0.016) TCGA-BF-AAP4-01 14 38724357 38724357 C T CLEC14A Missense_Mutation p.E291K 0.17 tolerated(0.08) benign(0.004) TCGA-BF-AAP4-01 14 45645778 45645778 A G FANCM Missense_Mutation p.Y1274C 0.14 tolerated(0.18) benign(0.004) TCGA-BF-AAP4-01 14 50081103 50081103 T C LRR1 Silent p.S378S 0.23 TCGA-BF-AAP4-01 14 50625329 50625329 G A SOS2 Missense_Mutation p.R630C 0.20 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 14 52486833 52486833 G A NID2 Missense_Mutation p.S913F 0.20 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 14 52509527 52509527 C T NID2 Missense_Mutation p.G518R 0.42 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 14 53112982 53112982 C A ERO1L Silent p.L412L 0.14 TCGA-BF-AAP4-01 14 57876126 57876126 G T NAA30 Missense_Mutation p.K327N 0.08 deleterious(0) possibly_damaging(0.636) TCGA-BF-AAP4-01 14 58796290 58796290 A G ARID4A Missense_Mutation p.N236S 0.12 tolerated(1) benign(0) TCGA-BF-AAP4-01 14 64065919 64065919 G T WDR89 Missense_Mutation p.H248N 0.09 tolerated(0.1) benign(0.001) TCGA-BF-AAP4-01 14 65406155 65406155 G T GPX2 3'UTR 0.14 TCGA-BF-AAP4-01 14 67848363 67848363 C A EIF2S1 Missense_Mutation p.L212I 0.06 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP4-01 14 68029070 68029070 C T PLEKHH1 Missense_Mutation p.S241F 0.26 tolerated_low_confidence(0.06) benign(0.004) TCGA-BF-AAP4-01 14 70990735 70990735 G A ADAM20 Missense_Mutation p.P297L 0.38 tolerated(0.34) benign(0.077) TCGA-BF-AAP4-01 14 70990882 70990882 G A ADAM20 Missense_Mutation p.S248F 0.30 tolerated(0.1) benign(0.192) TCGA-BF-AAP4-01 14 72054859 72054859 A T SIPA1L1 Silent p.I90I 0.16 TCGA-BF-AAP4-01 14 74876322 74876322 G A SYNDIG1L Silent p.L42L 0.13 TCGA-BF-AAP4-01 14 79432556 79432556 C T NRXN3 Missense_Mutation p.R489C 0.30 deleterious(0) probably_damaging(0.979) TCGA-BF-AAP4-01 14 94079336 94079336 C T UNC79 Silent p.L1139L 0.32 TCGA-BF-AAP4-01 14 94914818 94914818 C T SERPINA11 Silent p.L98L 0.15 TCGA-BF-AAP4-01 14 95033519 95033519 G A SERPINA4 Missense_Mutation p.E288K 0.25 tolerated(0.1) benign(0.434) TCGA-BF-AAP4-01 14 99865244 99865244 G A SETD3 Silent p.L519L 0.18 TCGA-BF-AAP4-01 15 101550769 101550769 C T LRRK1 Silent p.F368F 0.15 TCGA-BF-AAP4-01 15 20490563 20490563 G A CHEK2P2 RNA 0.04 TCGA-BF-AAP4-01 15 22332705 22332705 G A RP11-69H14.6 RNA 0.06 TCGA-BF-AAP4-01 15 22369306 22369306 C T OR4M2 Missense_Mutation p.S244F 0.09 deleterious(0) possibly_damaging(0.588) TCGA-BF-AAP4-01 15 22709174 22709174 C T AC116165.1 5'Flank 0.12 TCGA-BF-AAP4-01 15 25601062 25601062 G A UBE3A Missense_Mutation p.P704S 0.12 tolerated(0.4) benign(0.147) TCGA-BF-AAP4-01 15 34640441 34640441 G A NUTM1 Silent p.G96G 0.32 TCGA-BF-AAP4-01 15 34640616 34640616 C T NUTM1 Missense_Mutation p.P155S 0.33 tolerated(0.97) benign(0.06) TCGA-BF-AAP4-01 15 37385862 37385862 G A MEIS2 Missense_Mutation p.L187F 0.16 deleterious(0.02) probably_damaging(0.966) TCGA-BF-AAP4-01 15 40675103 40675103 G A KNSTRN Missense_Mutation p.D23N 0.22 tolerated_low_confidence(0.1) benign(0.038) TCGA-BF-AAP4-01 15 42651968 42651968 T A CAPN3 5'UTR 0.31 TCGA-BF-AAP4-01 15 43713244 43713244 G A TP53BP1 Missense_Mutation p.P1410L 0.15 tolerated(0.06) probably_damaging(1) TCGA-BF-AAP4-01 15 43724636 43724636 G A TP53BP1 Missense_Mutation p.P1144L 0.12 tolerated(0.23) benign(0.005) TCGA-BF-AAP4-01 15 48537008 48537008 G A SLC12A1 Missense_Mutation p.M453I 0.13 tolerated(0.49) benign(0.002) TCGA-BF-AAP4-01 15 52901928 52901928 G A FAM214A Missense_Mutation p.P395S 0.10 tolerated(0.24) benign(0.041) TCGA-BF-AAP4-01 15 56393754 56393754 G A RFX7 Missense_Mutation p.A205V 0.39 tolerated(0.39) benign(0.003) TCGA-BF-AAP4-01 15 57731079 57731079 G A CGNL1 Silent p.R294R 0.18 TCGA-BF-AAP4-01 15 62147117 62147117 G A VPS13C Nonsense_Mutation p.Q3705* 0.30 TCGA-BF-AAP4-01 15 63125709 63125709 G A TLN2 Missense_Mutation p.D2337N 0.20 tolerated(0.1) benign(0.099) TCGA-BF-AAP4-01 15 66629442 66629442 C T TIPIN Missense_Mutation p.G254R 0.14 tolerated_low_confidence(0.06) benign(0.06) TCGA-BF-AAP4-01 15 75968827 75968827 G A CSPG4 Silent p.V2011V 0.28 TCGA-BF-AAP4-01 15 76866528 76866528 C T SCAPER Missense_Mutation p.G937R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 15 78894227 78894227 G A CHRNA3 Silent p.L253L 0.28 TCGA-BF-AAP4-01 15 78894228 78894228 G A CHRNA3 Silent p.C252C 0.31 TCGA-BF-AAP4-01 15 79350715 79350715 G A RASGRF1 Silent p.I164I 0.52 TCGA-BF-AAP4-01 15 81214441 81214441 G A KIAA1199 Missense_Mutation p.G722E 0.39 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 15 81440238 81440238 C T C15orf26 Missense_Mutation p.R226W 0.21 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP4-01 15 83499703 83499703 C A WHAMM Missense_Mutation p.S665Y 0.16 tolerated(0.38) possibly_damaging(0.808) TCGA-BF-AAP4-01 15 85326537 85326537 C T ZNF592 Missense_Mutation p.P211S 0.19 tolerated(0.75) benign(0.002) TCGA-BF-AAP4-01 15 89007970 89007970 G A MRPL46 Nonsense_Mutation p.R185* 0.09 TCGA-BF-AAP4-01 15 92706231 92706231 G C SLCO3A1 Missense_Mutation p.E667Q 0.41 tolerated(0.1) benign(0.011) TCGA-BF-AAP4-01 15 94888386 94888386 C A MCTP2 Missense_Mutation p.A333D 0.13 tolerated(0.47) benign(0.001) TCGA-BF-AAP4-01 16 1394983 1394983 C T BAIAP3 Missense_Mutation p.A643V 0.35 tolerated(0.9) benign(0.013) TCGA-BF-AAP4-01 16 1607954 1607954 G A IFT140 Missense_Mutation p.S794F 0.15 deleterious(0) possibly_damaging(0.853) TCGA-BF-AAP4-01 16 1816344 1816344 G A MAPK8IP3 Missense_Mutation p.G917E 0.14 tolerated(0.06) benign(0.171) TCGA-BF-AAP4-01 16 19725876 19725876 G A KNOP1 Missense_Mutation p.P161L 0.17 tolerated(0.23) benign(0) TCGA-BF-AAP4-01 16 2012607 2012607 C T RPS2 Silent p.R200R 0.33 TCGA-BF-AAP4-01 16 2025891 2025891 C T TBL3 Missense_Mutation p.P357L 0.27 deleterious(0.02) possibly_damaging(0.493) TCGA-BF-AAP4-01 16 20681187 20681187 G A ACSM1 Missense_Mutation p.H292Y 0.11 tolerated(0.1) benign(0.277) TCGA-BF-AAP4-01 16 21042550 21042550 C T DNAH3 Silent p.T1752T 0.32 TCGA-BF-AAP4-01 16 2223366 2223366 C T TRAF7 Silent p.I326I 0.13 TCGA-BF-AAP4-01 16 2257227 2257227 A T MLST8 Missense_Mutation p.I152F 0.34 deleterious(0) probably_damaging(0.983) TCGA-BF-AAP4-01 16 23113748 23113748 G A USP31 Missense_Mutation p.R376C 0.24 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 16 2349433 2349433 C T ABCA3 Missense_Mutation p.G571E 0.18 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP4-01 16 23695258 23695258 C T PLK1 Missense_Mutation p.T295I 0.12 tolerated(0.05) benign(0.136) TCGA-BF-AAP4-01 16 23695259 23695259 C T PLK1 Silent p.T295T 0.12 TCGA-BF-AAP4-01 16 2546477 2546477 G A RP11-20I23.1 Missense_Mutation p.G110S 0.11 deleterious(0.03) probably_damaging(0.923) TCGA-BF-AAP4-01 16 25704466 25704466 G A HS3ST4 Nonsense_Mutation p.W243* 0.15 TCGA-BF-AAP4-01 16 25704467 25704467 G A HS3ST4 Nonsense_Mutation p.W243* 0.15 TCGA-BF-AAP4-01 16 28115915 28115915 G A XPO6 Silent p.I966I 0.12 TCGA-BF-AAP4-01 16 2817227 2817227 C T SRRM2 Missense_Mutation p.P2233L 0.07 probably_damaging(0.999) TCGA-BF-AAP4-01 16 29884985 29884985 G A SEZ6L2 Missense_Mutation p.P724S 0.20 tolerated(0.51) benign(0.101) TCGA-BF-AAP4-01 16 31234229 31234229 C T TRIM72 Silent p.F274F 0.28 TCGA-BF-AAP4-01 16 31284722 31284722 G A ITGAM Silent p.K247K 0.14 TCGA-BF-AAP4-01 16 31371292 31371292 G A ITGAX Missense_Mutation p.E205K 0.10 tolerated(0.6) benign(0) TCGA-BF-AAP4-01 16 3614109 3614109 C T NLRC3 Missense_Mutation p.G324R 0.13 deleterious(0) possibly_damaging(0.542) TCGA-BF-AAP4-01 16 3641190 3641190 C T SLX4 Missense_Mutation p.E817K 0.14 deleterious(0) possibly_damaging(0.754) TCGA-BF-AAP4-01 16 50759447 50759447 A T NOD2 Missense_Mutation p.E977V 0.15 deleterious(0) possibly_damaging(0.742) TCGA-BF-AAP4-01 16 51171332 51171332 C A SALL1 Silent p.A1222A 0.17 TCGA-BF-AAP4-01 16 51175893 51175893 G A SALL1 Silent p.S80S 0.31 TCGA-BF-AAP4-01 16 56947248 56947248 G A SLC12A3 Silent p.Q1008Q 0.16 TCGA-BF-AAP4-01 16 57060761 57060761 C T NLRC5 Missense_Mutation p.P636S 0.22 tolerated(0.08) possibly_damaging(0.521) TCGA-BF-AAP4-01 16 57778356 57778356 C T KATNB1 Silent p.P74P 0.12 TCGA-BF-AAP4-01 16 67006376 67006376 G A CES3 Missense_Mutation p.G470D 0.13 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP4-01 16 67234355 67234355 C T ELMO3 Silent p.L192L 0.41 TCGA-BF-AAP4-01 16 67688689 67688689 C T RLTPR Silent p.P1197P 0.07 TCGA-BF-AAP4-01 16 701201 701201 T C WDR90 Missense_Mutation p.F224S 0.18 deleterious(0) probably_damaging(0.941) TCGA-BF-AAP4-01 16 71682846 71682846 G A PHLPP2 Missense_Mutation p.P1307S 0.49 tolerated_low_confidence(0.41) benign(0.001) TCGA-BF-AAP4-01 16 72164126 72164126 G A PMFBP1 Missense_Mutation p.R590C 0.06 deleterious(0.01) possibly_damaging(0.502) TCGA-BF-AAP4-01 16 739449 739449 G A WDR24 Silent p.N64N 0.16 TCGA-BF-AAP4-01 16 77389842 77389842 G A ADAMTS18 Silent p.F485F 0.11 TCGA-BF-AAP4-01 16 78064472 78064472 G A CLEC3A Missense_Mutation p.E119K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 16 81965132 81965132 C T PLCG2 Missense_Mutation p.S871F 0.21 deleterious(0.03) benign(0.043) TCGA-BF-AAP4-01 16 89920928 89920928 C T SPIRE2 Missense_Mutation p.R254C 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 16 9858517 9858517 C T GRIN2A Missense_Mutation p.E962K 0.10 deleterious(0.02) possibly_damaging(0.642) TCGA-BF-AAP4-01 17 10352002 10352002 C T MYH4 Silent p.V1488V 0.29 TCGA-BF-AAP4-01 17 12656371 12656371 G A MYOCD Missense_Mutation p.R589K 0.15 tolerated(0.94) benign(0.108) TCGA-BF-AAP4-01 17 12656632 12656632 C T MYOCD Missense_Mutation p.S676L 0.24 tolerated(0.14) possibly_damaging(0.815) TCGA-BF-AAP4-01 17 15498065 15498065 G A RP11-385D13.1 Missense_Mutation p.P925L 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP4-01 17 15498066 15498066 G A RP11-385D13.1 Missense_Mutation p.P925S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-BF-AAP4-01 17 15643482 15643482 G A TBC1D26 Intron 0.28 TCGA-BF-AAP4-01 17 1675185 1675185 C A SERPINF1 Missense_Mutation p.S153R 0.18 tolerated(0.19) benign(0.206) TCGA-BF-AAP4-01 17 19232923 19232923 T A EPN2 Missense_Mutation p.F458L 0.22 tolerated(0.27) benign(0.009) TCGA-BF-AAP4-01 17 19611724 19611724 G A SLC47A2 Missense_Mutation p.H210Y 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-BF-AAP4-01 17 21731348 21731348 G A UBBP4 Intron 0.22 TCGA-BF-AAP4-01 17 2323872 2323872 G A METTL16 Missense_Mutation p.P361S 0.21 tolerated(0.17) benign(0.234) TCGA-BF-AAP4-01 17 26821419 26821419 G A SLC13A2 Silent p.G448G 0.20 TCGA-BF-AAP4-01 17 27042229 27042229 G A RAB34 Missense_Mutation p.S223F 0.17 deleterious(0) probably_damaging(0.956) TCGA-BF-AAP4-01 17 28548898 28548898 G A SLC6A4 Silent p.L27L 0.18 TCGA-BF-AAP4-01 17 28791884 28791884 C T CPD 3'UTR 0.15 TCGA-BF-AAP4-01 17 29220518 29220518 G A ATAD5 Silent p.R1549R 0.16 TCGA-BF-AAP4-01 17 29553594 29553594 G T NF1 Nonsense_Mutation p.E715* 0.13 TCGA-BF-AAP4-01 17 29586089 29586089 G A NF1 Missense_Mutation p.E1458K 0.39 deleterious(0) benign(0.079) TCGA-BF-AAP4-01 17 29857477 29857477 C T RAB11FIP4 Missense_Mutation p.S596L 0.16 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP4-01 17 30372837 30372837 C T LRRC37B Missense_Mutation p.P748S 0.33 tolerated(0.45) benign(0.008) TCGA-BF-AAP4-01 17 3182218 3182218 C T OR3A2 Silent p.Q4Q 0.15 TCGA-BF-AAP4-01 17 33689885 33689885 C T SLFN11 Missense_Mutation p.M314I 0.10 tolerated(0.19) benign(0.048) TCGA-BF-AAP4-01 17 34854185 34854185 C T MYO19 Silent p.R894R 0.23 TCGA-BF-AAP4-01 17 34854186 34854186 C T MYO19 Missense_Mutation p.R894K 0.22 tolerated(0.4) benign(0.013) TCGA-BF-AAP4-01 17 37650859 37650859 C T CDK12 Silent p.I777I 0.52 TCGA-BF-AAP4-01 17 38245668 38245668 C T THRA Intron 0.10 TCGA-BF-AAP4-01 17 39522764 39522764 G A KRT33B Silent p.S182S 0.11 TCGA-BF-AAP4-01 17 39538571 39538571 C T KRT34 Silent p.R18R 0.09 TCGA-BF-AAP4-01 17 39767612 39767612 C T KRT16 Silent p.R252R 0.43 TCGA-BF-AAP4-01 17 40314322 40314322 C T KCNH4 Missense_Mutation p.E868K 0.45 tolerated(0.6) benign(0.031) TCGA-BF-AAP4-01 17 40714334 40714334 T G COASY Intron 0.30 TCGA-BF-AAP4-01 17 40844615 40844615 C T CNTNAP1 Silent p.L877L 0.39 TCGA-BF-AAP4-01 17 42226151 42226151 C T C17orf53 Missense_Mutation p.P327L 0.41 tolerated(0.06) benign(0.016) TCGA-BF-AAP4-01 17 45662890 45662890 C T NPEPPS Missense_Mutation p.P225S 0.10 tolerated(0.27) benign(0.053) TCGA-BF-AAP4-01 17 47284746 47284746 C T GNGT2 Missense_Mutation p.M13I 0.15 deleterious(0.01) benign(0.335) TCGA-BF-AAP4-01 17 55945600 55945600 G A CUEDC1 Silent p.T315T 0.31 TCGA-BF-AAP4-01 17 57287389 57287389 G A SMG8 5'UTR 0.29 TCGA-BF-AAP4-01 17 57287390 57287390 G A SMG8 5'UTR 0.29 TCGA-BF-AAP4-01 17 58332539 58332539 G A USP32 Silent p.F357F 0.43 TCGA-BF-AAP4-01 17 59560556 59560556 C T TBX4 Silent p.Y439Y 0.12 TCGA-BF-AAP4-01 17 6021433 6021433 T A WSCD1 Missense_Mutation p.S434T 0.33 deleterious(0.04) probably_damaging(0.969) TCGA-BF-AAP4-01 17 6021434 6021434 C T WSCD1 Missense_Mutation p.S434F 0.33 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP4-01 17 60522270 60522270 C T METTL2A Silent p.G294G 0.36 TCGA-BF-AAP4-01 17 60522271 60522271 C T METTL2A Missense_Mutation p.R295C 0.36 deleterious(0) probably_damaging(0.985) TCGA-BF-AAP4-01 17 60742275 60742275 G A MRC2 Missense_Mutation p.G162D 0.11 tolerated(0.39) benign(0.048) TCGA-BF-AAP4-01 17 6597508 6597508 G A SLC13A5 Missense_Mutation p.S355F 0.23 deleterious(0) possibly_damaging(0.797) TCGA-BF-AAP4-01 17 67096943 67096943 G A ABCA6 Missense_Mutation p.P1003S 0.23 tolerated(0.68) benign(0.01) TCGA-BF-AAP4-01 17 67249728 67249728 G T ABCA5 Silent p.A1467A 0.24 TCGA-BF-AAP4-01 17 74010602 74010602 C T EVPL Missense_Mutation p.D760N 0.27 tolerated(0.07) possibly_damaging(0.735) TCGA-BF-AAP4-01 17 74473746 74473746 A T RHBDF2 Missense_Mutation p.F294Y 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-BF-AAP4-01 17 76415792 76415792 C T PGS1 Intron 0.20 TCGA-BF-AAP4-01 17 7804588 7804588 T C CHD3 Silent p.A1108A 0.26 TCGA-BF-AAP4-01 17 7809518 7809518 C A CHD3 Intron 0.07 TCGA-BF-AAP4-01 17 78444749 78444749 G A NPTX1 Missense_Mutation p.P388L 0.28 deleterious(0) benign(0.213) TCGA-BF-AAP4-01 17 7846706 7846706 C T CNTROB Intron 0.19 TCGA-BF-AAP4-01 17 79620306 79620306 G A PDE6G Silent p.F10F 0.59 TCGA-BF-AAP4-01 17 79914898 79914898 C T NOTUM Missense_Mutation p.E250K 0.33 tolerated(0.12) benign(0.347) TCGA-BF-AAP4-01 17 80788605 80788605 C T ZNF750 Missense_Mutation p.E529K 0.15 tolerated(0.74) benign(0.001) TCGA-BF-AAP4-01 17 8167827 8167827 C T PFAS Silent p.L653L 0.23 TCGA-BF-AAP4-01 17 8167838 8167838 C T PFAS Silent p.P656P 0.24 TCGA-BF-AAP4-01 17 8380245 8380245 T C MYH10 Missense_Mutation p.E1943G 0.17 possibly_damaging(0.535) TCGA-BF-AAP4-01 18 180332 180332 C T USP14 Missense_Mutation p.L133F 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-BF-AAP4-01 18 180333 180333 T C USP14 Missense_Mutation p.L133P 0.29 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 18 19996316 19996316 G A CTAGE1 Missense_Mutation p.P487S 0.11 tolerated(0.06) possibly_damaging(0.823) TCGA-BF-AAP4-01 18 21860909 21860909 A C OSBPL1A Missense_Mutation p.M393R 0.36 tolerated(0.13) benign(0.065) TCGA-BF-AAP4-01 18 24496451 24496451 C T CHST9 Silent p.G368G 0.10 TCGA-BF-AAP4-01 18 25570150 25570150 G A CDH2 Silent p.I503I 0.23 TCGA-BF-AAP4-01 18 28598162 28598162 C T DSC3 Missense_Mutation p.D380N 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 18 28654717 28654717 G A DSC2 Missense_Mutation p.P607L 0.11 deleterious(0) possibly_damaging(0.883) TCGA-BF-AAP4-01 18 28934652 28934652 C T DSG1 Silent p.G831G 0.17 TCGA-BF-AAP4-01 18 29038537 29038537 G A DSG3 Missense_Mutation p.D116N 0.16 deleterious(0.01) possibly_damaging(0.6) TCGA-BF-AAP4-01 18 29111024 29111024 G A DSG2 Silent p.S363S 0.32 TCGA-BF-AAP4-01 18 29339863 29339863 G A SLC25A52 Silent p.F264F 0.33 TCGA-BF-AAP4-01 18 30093396 30093396 C T WBP11P1 RNA 0.20 TCGA-BF-AAP4-01 18 3188885 3188885 G A MYOM1 Missense_Mutation p.S211F 0.15 deleterious_low_confidence(0.05) benign(0.205) TCGA-BF-AAP4-01 18 347180 347180 C T COLEC12 Missense_Mutation p.D148N 0.27 tolerated(0.5) probably_damaging(0.956) TCGA-BF-AAP4-01 18 42643219 42643219 C T SETBP1 Silent p.F1449F 0.50 TCGA-BF-AAP4-01 18 55020100 55020100 G A ST8SIA3 Missense_Mutation p.R8Q 0.20 possibly_damaging(0.602) TCGA-BF-AAP4-01 18 56149066 56149066 T A ALPK2 Nonsense_Mutation p.K2168* 0.12 TCGA-BF-AAP4-01 18 56414902 56414902 C T MALT1 Missense_Mutation p.P768L 0.10 tolerated_low_confidence(0.1) benign(0.002) TCGA-BF-AAP4-01 18 61308198 61308198 A T SERPINB4 Missense_Mutation p.Y127N 0.18 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 18 6941989 6941989 G A LAMA1 3'UTR 0.27 TCGA-BF-AAP4-01 18 71740899 71740899 G A FBXO15 Missense_Mutation p.P444S 0.06 deleterious(0.01) possibly_damaging(0.798) TCGA-BF-AAP4-01 18 76757241 76757241 G A SALL3 Silent p.L1274L 0.11 TCGA-BF-AAP4-01 19 10363083 10363083 C T MRPL4 Missense_Mutation p.S23F 0.42 deleterious(0.01) benign(0.151) TCGA-BF-AAP4-01 19 11031423 11031423 A C CARM1 Silent p.R475R 0.17 TCGA-BF-AAP4-01 19 11832979 11832979 G A ZNF823 Missense_Mutation p.S457F 0.11 tolerated(0.08) probably_damaging(1) TCGA-BF-AAP4-01 19 12924231 12924231 C T RNASEH2A Missense_Mutation p.S284F 0.17 deleterious(0.04) benign(0.071) TCGA-BF-AAP4-01 19 13340936 13340936 C T CACNA1A Missense_Mutation p.E1830K 0.30 possibly_damaging(0.486) TCGA-BF-AAP4-01 19 13409876 13409876 G A CACNA1A Silent p.F857F 0.27 TCGA-BF-AAP4-01 19 13410139 13410139 C A CACNA1A Missense_Mutation p.A770S 0.15 benign(0.077) TCGA-BF-AAP4-01 19 13862583 13862583 C T CCDC130 5'UTR 0.14 TCGA-BF-AAP4-01 19 14000765 14000765 C T C19orf57 Missense_Mutation p.G302R 0.35 tolerated(0.58) benign(0.011) TCGA-BF-AAP4-01 19 15124515 15124515 G A CCDC105 Nonsense_Mutation p.W201* 0.19 TCGA-BF-AAP4-01 19 15166240 15166240 G A CASP14 Splice_Site p.X174_splice 0.21 TCGA-BF-AAP4-01 19 15342792 15342792 G A EPHX3 Silent p.F77F 0.44 TCGA-BF-AAP4-01 19 16275687 16275687 C T CIB3 Silent p.L128L 0.16 TCGA-BF-AAP4-01 19 17885245 17885245 G A FCHO1 Missense_Mutation p.G293E 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 19 19414736 19414736 G A SUGP1 Intron 0.16 TCGA-BF-AAP4-01 19 1954036 1954036 C T CSNK1G2 Intron 0.36 TCGA-BF-AAP4-01 19 20044208 20044208 T G ZNF93 Missense_Mutation p.D148E 0.26 tolerated(0.21) benign(0.142) TCGA-BF-AAP4-01 19 35249965 35249965 G A ZNF599 Missense_Mutation p.H581Y 0.23 tolerated(0.07) possibly_damaging(0.727) TCGA-BF-AAP4-01 19 36018867 36018867 C T SBSN Missense_Mutation p.G106E 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-BF-AAP4-01 19 36051748 36051748 G A ATP4A Silent p.I169I 0.22 TCGA-BF-AAP4-01 19 36236323 36236323 C T PSENEN 5'UTR 0.16 TCGA-BF-AAP4-01 19 38126090 38126090 G A ZFP30 Missense_Mutation p.S451L 0.41 deleterious(0.02) probably_damaging(0.989) TCGA-BF-AAP4-01 19 39384160 39384160 G A SIRT2 Silent p.F40F 0.24 TCGA-BF-AAP4-01 19 40367913 40367913 C T FCGBP Silent p.E4349E 0.10 TCGA-BF-AAP4-01 19 41038655 41038655 G A SPTBN4 Missense_Mutation p.E1358K 0.15 deleterious(0.03) probably_damaging(0.976) TCGA-BF-AAP4-01 19 41522731 41522731 G A CYP2B6 Silent p.%3D 0.56 TCGA-BF-AAP4-01 19 41601824 41601824 C T CYP2A13 Missense_Mutation p.T488I 0.16 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 19 41944316 41944316 G A ATP5SL Silent p.L14L 0.33 TCGA-BF-AAP4-01 19 42125729 42125729 C T CEACAM4 Missense_Mutation p.D237N 0.12 tolerated(1) possibly_damaging(0.897) TCGA-BF-AAP4-01 19 43699191 43699191 C T PSG4 Missense_Mutation p.R315Q 0.15 tolerated(0.17) possibly_damaging(0.553) TCGA-BF-AAP4-01 19 4529203 4529203 C T PLIN5 Silent p.R134R 0.22 TCGA-BF-AAP4-01 19 4529204 4529204 C T PLIN5 Missense_Mutation p.R134Q 0.21 tolerated(0.31) benign(0.005) TCGA-BF-AAP4-01 19 4538062 4538062 G A LRG1 Missense_Mutation p.R312C 0.22 tolerated(0.06) benign(0.004) TCGA-BF-AAP4-01 19 4538683 4538683 C T LRG1 Missense_Mutation p.E105K 0.21 tolerated(0.1) benign(0.025) TCGA-BF-AAP4-01 19 45855830 45855830 C T ERCC2 Silent p.A660A 0.10 TCGA-BF-AAP4-01 19 46915349 46915349 G A CCDC8 Missense_Mutation p.P240L 0.13 benign(0.003) TCGA-BF-AAP4-01 19 47124864 47124864 G A PTGIR Silent p.F278F 0.19 TCGA-BF-AAP4-01 19 47278794 47278794 G A SLC1A5 Silent p.V533V 0.38 TCGA-BF-AAP4-01 19 48571061 48571061 G A PLA2G4C Silent p.F373F 0.12 TCGA-BF-AAP4-01 19 48664718 48664718 G A LIG1 Missense_Mutation p.P52S 0.12 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-BF-AAP4-01 19 49459502 49459502 G A BAX Missense_Mutation p.R94Q 0.12 tolerated(0.24) benign(0.121) TCGA-BF-AAP4-01 19 49573500 49573500 G A KCNA7 Silent p.F397F 0.17 TCGA-BF-AAP4-01 19 50099690 50099690 C T PRR12 Silent p.L700L 0.17 TCGA-BF-AAP4-01 19 50334029 50334029 C T MED25 Missense_Mutation p.P329L 0.20 deleterious(0.01) benign(0.144) TCGA-BF-AAP4-01 19 50713998 50713998 C T MYH14 Missense_Mutation p.R126W 0.36 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP4-01 19 50764851 50764851 C T MYH14 Silent p.I848I 0.14 TCGA-BF-AAP4-01 19 50951636 50951636 C T MYBPC2 Silent p.S487S 0.21 TCGA-BF-AAP4-01 19 51410193 51410193 A G KLK4 Silent p.S254S 0.17 TCGA-BF-AAP4-01 19 52714663 52714663 T C PPP2R1A Missense_Mutation p.F141L 0.30 deleterious(0) possibly_damaging(0.739) TCGA-BF-AAP4-01 19 53086902 53086902 C T ZNF701 3'UTR 0.25 TCGA-BF-AAP4-01 19 53304049 53304049 G C ZNF28 Missense_Mutation p.T350S 0.18 tolerated(0.12) probably_damaging(0.922) TCGA-BF-AAP4-01 19 53667995 53667995 G A ZNF665 Missense_Mutation p.S583L 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-BF-AAP4-01 19 55341919 55341919 C T KIR3DL1 3'UTR 0.25 TCGA-BF-AAP4-01 19 55715400 55715400 C T PTPRH Silent p.R212R 0.29 TCGA-BF-AAP4-01 19 55828302 55828302 C T TMEM150B Silent p.G119G 0.20 TCGA-BF-AAP4-01 19 56249669 56249669 C T NLRP9 Nonsense_Mutation p.W24* 0.12 TCGA-BF-AAP4-01 19 56515428 56515428 A G NLRP5 Missense_Mutation p.T137A 0.21 tolerated(0.94) benign(0.014) TCGA-BF-AAP4-01 19 56701681 56701681 G A ZSCAN5B Missense_Mutation p.P335S 0.20 tolerated(0.55) benign(0.015) TCGA-BF-AAP4-01 19 56701682 56701682 G A ZSCAN5B Silent p.S334S 0.20 TCGA-BF-AAP4-01 19 5748203 5748203 G A CATSPERD Missense_Mutation p.G281R 0.16 tolerated(0.16) possibly_damaging(0.589) TCGA-BF-AAP4-01 19 5778544 5778544 G T CATSPERD Missense_Mutation p.G752C 0.08 deleterious(0.02) possibly_damaging(0.626) TCGA-BF-AAP4-01 19 5778545 5778545 G T CATSPERD Missense_Mutation p.G752V 0.09 deleterious(0) probably_damaging(0.97) TCGA-BF-AAP4-01 19 5844664 5844664 G A FUT3 Missense_Mutation p.L63F 0.21 deleterious(0.05) benign(0.238) TCGA-BF-AAP4-01 19 5844665 5844665 G A FUT3 Silent p.T62T 0.21 TCGA-BF-AAP4-01 19 58723880 58723880 C T ZNF274 Missense_Mutation p.P444S 0.17 tolerated(0.42) benign(0.022) TCGA-BF-AAP4-01 19 58772234 58772234 G T ZNF544 Nonsense_Mutation p.E88* 0.21 TCGA-BF-AAP4-01 19 615926 615926 G A HCN2 Missense_Mutation p.G708S 0.26 tolerated_low_confidence(0.79) benign(0.01) TCGA-BF-AAP4-01 19 7676756 7676756 C T CAMSAP3 Silent p.I486I 0.40 TCGA-BF-AAP4-01 19 7917992 7917992 C T EVI5L Silent p.P336P 0.19 TCGA-BF-AAP4-01 19 8959686 8959686 C T MUC16 Silent p.K14482K 0.33 TCGA-BF-AAP4-01 19 9048513 9048513 C T MUC16 Missense_Mutation p.G11040R 0.11 benign(0.016) TCGA-BF-AAP4-01 19 9066305 9066305 C T MUC16 Silent p.L7047L 0.16 TCGA-BF-AAP4-01 19 9085301 9085301 C T MUC16 Missense_Mutation p.A2172T 0.28 unknown(0) TCGA-BF-AAP4-01 19 9090060 9090060 T C MUC16 Silent p.T585T 0.12 TCGA-BF-AAP4-01 19 9676973 9676973 C T ZNF121 Silent p.K272K 0.17 TCGA-BF-AAP4-01 1 103364301 103364301 C T COL11A1 Missense_Mutation p.G1390E 0.12 unknown(0) TCGA-BF-AAP4-01 1 103427818 103427818 C T COL11A1 Missense_Mutation p.D1010N 0.10 unknown(0) TCGA-BF-AAP4-01 1 10713716 10713716 G A CASZ1 Missense_Mutation p.P800S 0.45 tolerated_low_confidence(0.31) benign(0.06) TCGA-BF-AAP4-01 1 110466109 110466109 C T CSF1 Missense_Mutation p.P289L 0.22 tolerated(0.05) benign(0.034) TCGA-BF-AAP4-01 1 110466645 110466645 C T CSF1 Silent p.L468L 0.36 TCGA-BF-AAP4-01 1 110774854 110774854 C T KCNC4 Missense_Mutation p.L611F 0.33 tolerated_low_confidence(0.37) benign(0.001) TCGA-BF-AAP4-01 1 111889622 111889622 T A PIFO Missense_Mutation p.V37D 0.06 tolerated(0.06) possibly_damaging(0.637) TCGA-BF-AAP4-01 1 111964246 111964246 C T OVGP1 Missense_Mutation p.E220K 0.09 deleterious(0) probably_damaging(0.97) TCGA-BF-AAP4-01 1 116563381 116563381 T A SLC22A15 Missense_Mutation p.F158Y 0.19 deleterious(0) possibly_damaging(0.867) TCGA-BF-AAP4-01 1 117146543 117146543 G A IGSF3 Missense_Mutation p.R463C 0.33 deleterious(0.01) probably_damaging(0.927) TCGA-BF-AAP4-01 1 12854245 12854245 G A PRAMEF1 Missense_Mutation p.E157K 0.05 tolerated(0.34) probably_damaging(0.941) TCGA-BF-AAP4-01 1 12907567 12907567 C T HNRNPCL1 Silent p.Q192Q 0.21 TCGA-BF-AAP4-01 1 12921262 12921262 C T PRAMEF2 Silent p.L351L 0.18 TCGA-BF-AAP4-01 1 12921298 12921298 C T PRAMEF2 Silent p.Y363Y 0.27 TCGA-BF-AAP4-01 1 1330914 1330914 G A CCNL2 Intron 0.21 TCGA-BF-AAP4-01 1 147230434 147230434 C T GJA5 Missense_Mutation p.E305K 0.14 tolerated(0.25) benign(0.125) TCGA-BF-AAP4-01 1 147230435 147230435 C T GJA5 Silent p.Q304Q 0.14 TCGA-BF-AAP4-01 1 149761737 149761737 C T FCGR1A Silent p.F229F 0.25 TCGA-BF-AAP4-01 1 150974737 150974737 G A FAM63A Silent p.I167I 0.36 TCGA-BF-AAP4-01 1 151847278 151847278 G A THEM4 3'UTR 0.12 TCGA-BF-AAP4-01 1 152058324 152058324 G A TCHHL1 Missense_Mutation p.P612S 0.44 tolerated(0.11) benign(0.132) TCGA-BF-AAP4-01 1 152277889 152277889 G A FLG Missense_Mutation p.S3158F 0.11 unknown(0) TCGA-BF-AAP4-01 1 152283467 152283467 G A FLG Missense_Mutation p.R1299W 0.47 possibly_damaging(0.689) TCGA-BF-AAP4-01 1 153924625 153924625 G A CRTC2 Missense_Mutation p.T289I 0.13 deleterious(0) probably_damaging(0.958) TCGA-BF-AAP4-01 1 155031201 155031201 C T ADAM15 Nonsense_Mutation p.R645* 0.65 TCGA-BF-AAP4-01 1 155240672 155240672 G A CLK2 Missense_Mutation p.R33C 0.57 deleterious(0.01) unknown(0) TCGA-BF-AAP4-01 1 155261590 155261590 C T PKLR Nonsense_Mutation p.W525* 0.48 TCGA-BF-AAP4-01 1 155629905 155629905 G A YY1AP1 Missense_Mutation p.S737F 0.23 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-BF-AAP4-01 1 156532404 156532404 G A IQGAP3 Silent p.I284I 0.20 TCGA-BF-AAP4-01 1 157771858 157771858 C T FCRL1 Missense_Mutation p.E245K 0.18 tolerated(0.18) possibly_damaging(0.844) TCGA-BF-AAP4-01 1 158323802 158323802 C T CD1E Silent p.F8F 0.19 TCGA-BF-AAP4-01 1 158581176 158581176 G A SPTA1 Missense_Mutation p.L2380F 0.09 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP4-01 1 158724803 158724803 C T OR6K6 Silent p.I66I 0.36 TCGA-BF-AAP4-01 1 159778081 159778081 G A FCRL6 Missense_Mutation p.G56R 0.30 tolerated(0.85) benign(0.302) TCGA-BF-AAP4-01 1 159778122 159778122 C T FCRL6 Silent p.S69S 0.13 TCGA-BF-AAP4-01 1 159804966 159804966 C T SLAMF8 Intron 0.27 TCGA-BF-AAP4-01 1 159923165 159923165 G A SLAMF9 Nonsense_Mutation p.Q109* 0.26 TCGA-BF-AAP4-01 1 160098793 160098793 C T ATP1A2 Missense_Mutation p.P414S 0.15 tolerated(0.28) benign(0.009) TCGA-BF-AAP4-01 1 162353313 162353313 G A C1orf226 Missense_Mutation p.R263K 0.50 tolerated(0.27) benign(0.027) TCGA-BF-AAP4-01 1 162353314 162353314 G A C1orf226 Silent p.R263R 0.50 TCGA-BF-AAP4-01 1 16376162 16376162 C T CLCNKB Silent p.F277F 0.16 TCGA-BF-AAP4-01 1 166991034 166991034 C T MAEL Missense_Mutation p.S416L 0.15 tolerated_low_confidence(0.07) benign(0.031) TCGA-BF-AAP4-01 1 171079947 171079947 C T FMO3 Silent p.I212I 0.22 TCGA-BF-AAP4-01 1 171173185 171173185 G A FMO2 Missense_Mutation p.G270D 0.15 deleterious(0) probably_damaging(0.943) TCGA-BF-AAP4-01 1 171956879 171956879 C T DNM3 Missense_Mutation p.R107C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 1 172501620 172501620 G C SUCO 5'Flank 0.11 TCGA-BF-AAP4-01 1 172501820 172501820 G C SUCO 5'Flank 0.13 TCGA-BF-AAP4-01 1 172501859 172501859 G C SUCO 5'Flank 0.12 TCGA-BF-AAP4-01 1 173542447 173542447 G A SLC9C2 Missense_Mutation p.S307L 0.30 deleterious(0) possibly_damaging(0.622) TCGA-BF-AAP4-01 1 173570843 173570843 G A SLC9C2 Missense_Mutation p.L25F 0.21 tolerated_low_confidence(0.71) benign(0.002) TCGA-BF-AAP4-01 1 173822640 173822640 G A DARS2 Missense_Mutation p.A500T 0.24 tolerated(0.09) benign(0.012) TCGA-BF-AAP4-01 1 173907985 173907985 C G RC3H1 Missense_Mutation p.L1092F 0.05 tolerated_low_confidence(0.14) benign(0.333) TCGA-BF-AAP4-01 1 17413079 17413079 G A PADI2 Silent p.F257F 0.10 TCGA-BF-AAP4-01 1 175067697 175067697 G A TNN Silent p.Q695Q 0.10 TCGA-BF-AAP4-01 1 176913034 176913034 G A ASTN1 Silent p.F790F 0.24 TCGA-BF-AAP4-01 1 176915133 176915133 C T ASTN1 Silent p.G726G 0.15 TCGA-BF-AAP4-01 1 183261992 183261992 C T NMNAT2 Missense_Mutation p.G59S 0.21 tolerated(0.05) possibly_damaging(0.88) TCGA-BF-AAP4-01 1 183617019 183617019 C T APOBEC4 Missense_Mutation p.D300N 0.22 tolerated(0.43) benign(0.008) TCGA-BF-AAP4-01 1 1849375 1849375 G A TMEM52 Silent p.P192P 0.19 TCGA-BF-AAP4-01 1 1849376 1849376 G A TMEM52 Missense_Mutation p.P192L 0.19 tolerated(0.09) benign(0.009) TCGA-BF-AAP4-01 1 186039889 186039889 G A HMCN1 Silent p.Q2713Q 0.18 TCGA-BF-AAP4-01 1 186086137 186086137 C T HMCN1 Missense_Mutation p.S3858L 0.30 probably_damaging(0.993) TCGA-BF-AAP4-01 1 186313648 186313648 A T TPR Missense_Mutation p.D1092E 0.12 possibly_damaging(0.739) TCGA-BF-AAP4-01 1 18961684 18961684 G A PAX7 Missense_Mutation p.R134Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP4-01 1 197063222 197063222 T G ASPM Missense_Mutation p.M3026L 0.14 tolerated(0.71) benign(0.002) TCGA-BF-AAP4-01 1 197390668 197390668 G A CRB1 Silent p.V570V 0.12 TCGA-BF-AAP4-01 1 198685834 198685834 A G PTPRC Missense_Mutation p.K439E 0.20 tolerated(0.6) benign(0.012) TCGA-BF-AAP4-01 1 203317385 203317385 G A FMOD Missense_Mutation p.S5F 0.12 tolerated(0.7) benign(0.033) TCGA-BF-AAP4-01 1 204217975 204217975 G A PLEKHA6 Missense_Mutation p.R600C 0.14 tolerated(0.27) possibly_damaging(0.673) TCGA-BF-AAP4-01 1 205308795 205308795 C T KLHDC8A Missense_Mutation p.R173Q 0.08 tolerated(0.44) benign(0.041) TCGA-BF-AAP4-01 1 205628527 205628527 G A SLC45A3 Silent p.F499F 0.14 TCGA-BF-AAP4-01 1 207095226 207095226 C T FAIM3 5'UTR 0.15 TCGA-BF-AAP4-01 1 207758027 207758027 A T CR1 Missense_Mutation p.N1779I 0.25 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP4-01 1 207780614 207780614 C T CR1 Silent p.S1943S 0.15 TCGA-BF-AAP4-01 1 207782702 207782702 T G CR1 Missense_Mutation p.F1988L 0.12 deleterious(0) possibly_damaging(0.646) TCGA-BF-AAP4-01 1 207925460 207925460 G A CD46 5'UTR 0.13 TCGA-BF-AAP4-01 1 209933392 209933392 G A TRAF3IP3 Missense_Mutation p.S3N 0.24 tolerated(0.06) benign(0.003) TCGA-BF-AAP4-01 1 209936709 209936709 A T TRAF3IP3 Missense_Mutation p.E193V 0.41 deleterious(0) probably_damaging(0.986) TCGA-BF-AAP4-01 1 211093091 211093091 G A KCNH1 Silent p.I451I 0.20 TCGA-BF-AAP4-01 1 2125092 2125092 C T C1orf86 Silent p.K152K 0.28 TCGA-BF-AAP4-01 1 216062160 216062160 A C USH2A Missense_Mutation p.S2611A 0.12 probably_damaging(1) TCGA-BF-AAP4-01 1 220310240 220310240 T A IARS2 Missense_Mutation p.V679D 0.09 deleterious(0) possibly_damaging(0.477) TCGA-BF-AAP4-01 1 22211624 22211624 G A HSPG2 Missense_Mutation p.R413W 0.33 possibly_damaging(0.512) TCGA-BF-AAP4-01 1 22211625 22211625 G A HSPG2 Silent p.P412P 0.33 TCGA-BF-AAP4-01 1 223176378 223176378 C T DISP1 Missense_Mutation p.R547C 0.07 deleterious(0) probably_damaging(0.978) TCGA-BF-AAP4-01 1 225594455 225594455 G A LBR Missense_Mutation p.P465L 0.52 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 1 228346189 228346189 C T GJC2 Missense_Mutation p.P244S 0.10 tolerated(0.11) benign(0.026) TCGA-BF-AAP4-01 1 228475971 228475971 G A OBSCN Missense_Mutation p.E3770K 0.44 possibly_damaging(0.87) TCGA-BF-AAP4-01 1 228480331 228480331 A T OBSCN Nonsense_Mutation p.K4000* 0.47 TCGA-BF-AAP4-01 1 228480352 228480352 G A OBSCN Missense_Mutation p.D4007N 0.47 benign(0.145) TCGA-BF-AAP4-01 1 22924185 22924185 C T EPHA8 Silent p.V649V 0.31 TCGA-BF-AAP4-01 1 22987523 22987523 C T C1QB Missense_Mutation p.R136W 0.15 deleterious(0) possibly_damaging(0.789) TCGA-BF-AAP4-01 1 23191437 23191437 C T EPHB2 Silent p.T345T 0.14 TCGA-BF-AAP4-01 1 233193028 233193028 C T PCNXL2 Missense_Mutation p.R1362Q 0.63 deleterious(0.02) possibly_damaging(0.545) TCGA-BF-AAP4-01 1 233514892 233514892 C T MLK4 Missense_Mutation p.P714S 0.25 tolerated(0.95) benign(0.009) TCGA-BF-AAP4-01 1 234569203 234569203 A T TARBP1 Missense_Mutation p.L783M 0.07 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 1 235856743 235856743 G A LYST Silent p.I3536I 0.43 TCGA-BF-AAP4-01 1 236154233 236154233 C T NID1 Missense_Mutation p.G961R 0.14 deleterious(0.01) benign(0.043) TCGA-BF-AAP4-01 1 23758202 23758202 G A ASAP3 Missense_Mutation p.P845S 0.20 deleterious_low_confidence(0.02) benign(0.062) TCGA-BF-AAP4-01 1 240371937 240371937 G A FMN2 Silent p.G1275G 0.21 TCGA-BF-AAP4-01 1 241920644 241920644 C T WDR64 Silent p.F600F 0.17 TCGA-BF-AAP4-01 1 242253120 242253120 G A PLD5 3'UTR 0.12 TCGA-BF-AAP4-01 1 243328279 243328279 G A CEP170 Missense_Mutation p.R995C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 1 2436102 2436102 G A PLCH2 3'UTR 0.23 TCGA-BF-AAP4-01 1 247695657 247695657 C T OR2C3 Missense_Mutation p.D53N 0.60 deleterious(0.03) possibly_damaging(0.563) TCGA-BF-AAP4-01 1 247875139 247875139 C T OR6F1 Missense_Mutation p.G307R 0.22 tolerated(0.37) benign(0.011) TCGA-BF-AAP4-01 1 247902453 247902453 C T OR14K1 Silent p.V179V 0.27 TCGA-BF-AAP4-01 1 248129064 248129064 C G OR2AK2 Missense_Mutation p.P144R 0.04 deleterious(0) probably_damaging(0.953) TCGA-BF-AAP4-01 1 248402930 248402930 C T OR2M4 Missense_Mutation p.R234C 0.51 tolerated(0.05) benign(0.036) TCGA-BF-AAP4-01 1 248570389 248570389 C A OR2T1 Nonsense_Mutation p.S365* 0.43 TCGA-BF-AAP4-01 1 26012991 26012991 C T MAN1C1 Missense_Mutation p.P201S 0.20 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 1 26135164 26135164 C T SEPN1 Missense_Mutation p.P211S 0.29 deleterious(0) possibly_damaging(0.886) TCGA-BF-AAP4-01 1 26691092 26691092 C T ZNF683 Silent p.K315K 0.20 TCGA-BF-AAP4-01 1 29631335 29631335 G A PTPRU Missense_Mutation p.G916D 0.17 deleterious(0.03) probably_damaging(0.943) TCGA-BF-AAP4-01 1 31426730 31426730 T A PUM1 Missense_Mutation p.S808C 0.22 deleterious(0) possibly_damaging(0.88) TCGA-BF-AAP4-01 1 32688000 32688000 C T EIF3I 5'UTR 0.39 TCGA-BF-AAP4-01 1 34190114 34190114 C T CSMD2 Intron 0.23 TCGA-BF-AAP4-01 1 35370520 35370520 C T DLGAP3 Silent p.G155G 0.19 TCGA-BF-AAP4-01 1 3669103 3669103 G A CCDC27 Missense_Mutation p.E20K 0.21 tolerated_low_confidence(0.27) possibly_damaging(0.486) TCGA-BF-AAP4-01 1 3775285 3775285 C T DFFB Missense_Mutation p.P40S 0.16 tolerated(0.07) benign(0.241) TCGA-BF-AAP4-01 1 39879954 39879954 C T KIAA0754 Silent p.F1203F 0.24 TCGA-BF-AAP4-01 1 40713628 40713628 T G TMCO2 5'UTR 0.15 TCGA-BF-AAP4-01 1 42049545 42049545 G A HIVEP3 Silent p.S308S 0.15 TCGA-BF-AAP4-01 1 42049546 42049546 G A HIVEP3 Missense_Mutation p.S308F 0.14 possibly_damaging(0.653) TCGA-BF-AAP4-01 1 42049786 42049786 G A HIVEP3 Missense_Mutation p.S228F 0.18 probably_damaging(1) TCGA-BF-AAP4-01 1 46206804 46206804 G A IPP Missense_Mutation p.H165Y 0.11 deleterious(0) probably_damaging(0.984) TCGA-BF-AAP4-01 1 46495803 46495803 C T MAST2 Missense_Mutation p.R816C 0.32 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BF-AAP4-01 1 47610608 47610608 C T CYP4A22 Silent p.P396P 0.13 TCGA-BF-AAP4-01 1 55089136 55089136 G A FAM151A 5'UTR 0.21 TCGA-BF-AAP4-01 1 6285078 6285078 A T ICMT 3'UTR 0.27 TCGA-BF-AAP4-01 1 6534620 6534620 C T PLEKHG5 Silent p.R189R 0.13 TCGA-BF-AAP4-01 1 66036212 66036213 TT A LEPR Frame_Shift_Del p.F33Ifs*83 0.26 TCGA-BF-AAP4-01 1 70225944 70225944 T C LRRC7 Silent p.G19G 0.14 TCGA-BF-AAP4-01 1 78207090 78207090 G A USP33 Nonsense_Mutation p.Q67* 0.14 TCGA-BF-AAP4-01 1 78207091 78207091 G A USP33 Silent p.V66V 0.13 TCGA-BF-AAP4-01 1 78958551 78958551 C T PTGFR Silent p.I41I 0.30 TCGA-BF-AAP4-01 1 86453300 86453300 C T COL24A1 Missense_Mutation p.G783D 0.17 deleterious(0) probably_damaging(0.936) TCGA-BF-AAP4-01 1 89613257 89613257 C T GBP7 Missense_Mutation p.G453E 0.09 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 1 89617986 89617986 T A GBP7 Missense_Mutation p.D197V 0.20 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 1 94342382 94342385 ACAG CAA DNTTIP2 Frame_Shift_Del p.T369Ifs*4 0.10 TCGA-BF-AAP4-01 1 982006 982006 C T AGRN Silent p.S1047S 0.50 TCGA-BF-AAP4-01 20 19665840 19665840 C T SLC24A3 Missense_Mutation p.P387S 0.11 tolerated(0.17) benign(0.049) TCGA-BF-AAP4-01 20 20071573 20071573 G A C20orf26 Missense_Mutation p.E218K 0.28 deleterious(0.01) probably_damaging(0.941) TCGA-BF-AAP4-01 20 3016466 3016466 C T PTPRA Missense_Mutation p.H693Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 20 31606628 31606628 G A BPIFB2 Silent p.L285L 0.14 TCGA-BF-AAP4-01 20 32246282 32246282 C T NECAB3 Splice_Site p.X357_splice 0.14 TCGA-BF-AAP4-01 20 32246283 32246283 C T NECAB3 Missense_Mutation p.R357K 0.14 deleterious(0.04) possibly_damaging(0.78) TCGA-BF-AAP4-01 20 32246345 32246345 C T NECAB3 Silent p.K336K 0.14 TCGA-BF-AAP4-01 20 32378921 32378921 C T ZNF341 Silent p.S714S 0.16 TCGA-BF-AAP4-01 20 33449359 33449359 G A GGT7 Silent p.G188G 0.15 TCGA-BF-AAP4-01 20 35060742 35060742 G A DLGAP4 Missense_Mutation p.D208N 0.17 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 20 35743683 35743683 C A MROH8 Nonsense_Mutation p.E837* 0.27 TCGA-BF-AAP4-01 20 40034044 40034044 G A CHD6 Missense_Mutation p.P2446L 0.20 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 20 42247591 42247591 G A IFT52 Silent p.G208G 0.12 TCGA-BF-AAP4-01 20 43058338 43058338 C T HNF4A 3'UTR 0.20 TCGA-BF-AAP4-01 20 43058339 43058339 C T HNF4A 3'UTR 0.19 TCGA-BF-AAP4-01 20 44170773 44170773 C T EPPIN Intron 0.27 TCGA-BF-AAP4-01 20 44587921 44587921 G A ZNF335 Silent p.F724F 0.20 TCGA-BF-AAP4-01 20 44670121 44670121 C T SLC12A5 Silent p.T359T 0.24 TCGA-BF-AAP4-01 20 44750912 44750912 G A CD40 Silent p.T57T 0.27 TCGA-BF-AAP4-01 20 45131035 45131035 G A ZNF334 Missense_Mutation p.H315Y 0.12 deleterious(0) possibly_damaging(0.712) TCGA-BF-AAP4-01 20 47990349 47990349 C T KCNB1 Missense_Mutation p.R583Q 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-BF-AAP4-01 20 48600466 48600466 C T SNAI1 Missense_Mutation p.S63F 0.34 deleterious(0.01) possibly_damaging(0.584) TCGA-BF-AAP4-01 20 49626348 49626348 G A KCNG1 Silent p.F176F 0.35 TCGA-BF-AAP4-01 20 55099930 55099930 C T FAM209A Silent p.F22F 0.31 TCGA-BF-AAP4-01 20 5903668 5903668 C T CHGB Missense_Mutation p.S293F 0.29 tolerated(0.09) benign(0.126) TCGA-BF-AAP4-01 20 60927062 60927062 G A LAMA5 Missense_Mutation p.T254I 0.12 probably_damaging(0.997) TCGA-BF-AAP4-01 20 62729926 62729926 C T OPRL1 Missense_Mutation p.T296I 0.26 tolerated(0.36) benign(0.004) TCGA-BF-AAP4-01 20 8630028 8630028 C T PLCB1 Missense_Mutation p.R176C 0.28 deleterious(0) benign(0.018) TCGA-BF-AAP4-01 21 10942746 10942746 C T TPTE Missense_Mutation p.R232K 0.08 tolerated(1) benign(0.011) TCGA-BF-AAP4-01 21 11038754 11038754 A G BAGE2 RNA 0.08 TCGA-BF-AAP4-01 21 15558281 15558281 C T LIPI Splice_Site p.X202_splice 0.47 TCGA-BF-AAP4-01 21 30318606 30318606 C T LTN1 Missense_Mutation p.G1210D 0.30 tolerated(0.07) benign(0.098) TCGA-BF-AAP4-01 21 30318607 30318607 C T LTN1 Missense_Mutation p.G1210S 0.30 tolerated(0.51) benign(0.02) TCGA-BF-AAP4-01 21 30714762 30714762 T C BACH1 Silent p.L607L 0.14 TCGA-BF-AAP4-01 21 33043791 33043791 G A SCAF4 Missense_Mutation p.S1122F 0.33 unknown(0) TCGA-BF-AAP4-01 21 38390430 38390430 G A RIPPLY3 Missense_Mutation p.G166R 0.10 tolerated_low_confidence(0.66) benign(0.001) TCGA-BF-AAP4-01 21 38853016 38853016 T C DYRK1A Missense_Mutation p.V135A 0.06 deleterious(0.05) benign(0.098) TCGA-BF-AAP4-01 21 41711259 41711259 C T DSCAM Missense_Mutation p.G432R 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 21 43321749 43321749 G A C2CD2 Silent p.I514I 0.08 TCGA-BF-AAP4-01 21 44195394 44195394 C T PDE9A Silent p.D591D 0.10 TCGA-BF-AAP4-01 21 45547893 45547893 C T PWP2 Silent p.L741L 0.50 TCGA-BF-AAP4-01 22 17071780 17071780 C T CCT8L2 Missense_Mutation p.G554E 0.16 deleterious_low_confidence(0.02) benign(0.005) TCGA-BF-AAP4-01 22 18846126 18846126 G A BCRP7 RNA 0.12 TCGA-BF-AAP4-01 22 21327749 21327749 C T AIFM3 Missense_Mutation p.P62L 0.30 tolerated(0.49) benign(0.075) TCGA-BF-AAP4-01 22 22749636 22749636 C T IGLV7-43 Missense_Mutation p.P54S 0.24 tolerated(0.17) probably_damaging(0.916) TCGA-BF-AAP4-01 22 23915476 23915476 C T IGLL1 Missense_Mutation p.V207M 0.08 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-BF-AAP4-01 22 24085909 24085909 G A ZNF70 3'UTR 0.11 TCGA-BF-AAP4-01 22 24621349 24621349 C T GGT5 Missense_Mutation p.G457E 0.14 tolerated(0.1) benign(0.175) TCGA-BF-AAP4-01 22 26239706 26239706 C T MYO18B Silent p.S1071S 0.13 TCGA-BF-AAP4-01 22 26877775 26877775 G A HPS4 5'UTR 0.21 TCGA-BF-AAP4-01 22 29694829 29694829 C T EWSR1 Silent p.N513N 0.27 TCGA-BF-AAP4-01 22 30416681 30416681 C T MTMR3 Silent p.S1011S 0.21 TCGA-BF-AAP4-01 22 31091255 31091255 C T OSBP2 Missense_Mutation p.T120I 0.17 tolerated_low_confidence(0.15) benign(0.002) TCGA-BF-AAP4-01 22 31091256 31091256 T C OSBP2 Silent p.T120T 0.17 TCGA-BF-AAP4-01 22 31521861 31521861 G A INPP5J Intron 0.26 TCGA-BF-AAP4-01 22 32754116 32754116 C T RFPL3 Missense_Mutation p.P20S 0.11 tolerated_low_confidence(0.09) benign(0.002) TCGA-BF-AAP4-01 22 36124802 36124802 G A APOL5 Missense_Mutation p.E387K 0.13 deleterious_low_confidence(0.01) benign(0.292) TCGA-BF-AAP4-01 22 37771066 37771066 G A ELFN2 Missense_Mutation p.T170I 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-BF-AAP4-01 22 38151602 38151602 C T TRIOBP Missense_Mutation p.R1875W 0.18 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 22 38168688 38168688 C T TRIOBP Silent p.I2339I 0.28 TCGA-BF-AAP4-01 22 40059753 40059753 C T CACNA1I Silent p.A1168A 0.14 TCGA-BF-AAP4-01 22 41574613 41574613 C T EP300 Missense_Mutation p.P2300S 0.32 probably_damaging(0.968) TCGA-BF-AAP4-01 22 41574614 41574614 C T EP300 Missense_Mutation p.P2300L 0.30 probably_damaging(0.981) TCGA-BF-AAP4-01 22 42141933 42141933 C T MEI1 Missense_Mutation p.P528L 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-BF-AAP4-01 22 42538808 42538808 C T NDUFA6-AS1 3'Flank 0.15 TCGA-BF-AAP4-01 22 43995995 43995995 C T EFCAB6 Missense_Mutation p.E944K 0.12 tolerated(0.09) probably_damaging(0.987) TCGA-BF-AAP4-01 22 43996059 43996059 C T EFCAB6 Silent p.R922R 0.15 TCGA-BF-AAP4-01 22 45828185 45828185 C T RIBC2 Silent p.V359V 0.32 TCGA-BF-AAP4-01 22 50500073 50500073 G A MLC1 Missense_Mutation p.P358L 0.15 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-BF-AAP4-01 22 50705869 50705869 G A MAPK11 Silent p.I116I 0.33 TCGA-BF-AAP4-01 22 50905982 50905982 G A SBF1 Silent p.L139L 0.24 TCGA-BF-AAP4-01 2 101874294 101874294 T G CNOT11 Missense_Mutation p.S186A 0.15 tolerated(0.51) benign(0.024) TCGA-BF-AAP4-01 2 105990149 105990149 G A FHL2 Silent p.F66F 0.10 TCGA-BF-AAP4-01 2 107050831 107050831 C T RGPD3 Splice_Site p.X687_splice 0.13 TCGA-BF-AAP4-01 2 108487623 108487623 G A RGPD4 Missense_Mutation p.E1055K 0.16 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 2 108499194 108499194 G A RGPD4 Missense_Mutation p.E1711K 0.18 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-BF-AAP4-01 2 112760747 112760747 G A MERTK Missense_Mutation p.G590E 0.21 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 2 113953766 113953766 C T PSD4 Silent p.S756S 0.09 TCGA-BF-AAP4-01 2 11809715 11809715 C T NTSR2 Missense_Mutation p.E181K 0.27 tolerated(0.19) benign(0.016) TCGA-BF-AAP4-01 2 11932107 11932107 G A LPIN1 Missense_Mutation p.R643K 0.26 deleterious(0.02) benign(0.163) TCGA-BF-AAP4-01 2 128918777 128918777 C T UGGT1 Silent p.I920I 0.28 TCGA-BF-AAP4-01 2 131704126 131704126 C T ARHGEF4 Silent p.L115L 0.10 TCGA-BF-AAP4-01 2 137814476 137814476 C T THSD7B Missense_Mutation p.P209L 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-BF-AAP4-01 2 152410492 152410492 G A NEB Silent p.I6492I 0.19 TCGA-BF-AAP4-01 2 152417515 152417515 C T NEB Intron 0.32 TCGA-BF-AAP4-01 2 162091990 162091990 C T TANK Silent p.F413F 0.23 TCGA-BF-AAP4-01 2 163029699 163029699 G A FAP Silent p.F689F 0.23 TCGA-BF-AAP4-01 2 168103124 168103124 G A XIRP2 Missense_Mutation p.G1741E 0.21 probably_damaging(1) TCGA-BF-AAP4-01 2 169699544 169699544 G A NOSTRIN Missense_Mutation p.E183K 0.15 tolerated(0.13) probably_damaging(0.936) TCGA-BF-AAP4-01 2 169711862 169711862 G A NOSTRIN Missense_Mutation p.E343K 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-BF-AAP4-01 2 170366988 170366988 G A KLHL41 Missense_Mutation p.D234N 0.23 tolerated(0.05) benign(0.021) TCGA-BF-AAP4-01 2 170502493 170502493 C T CCDC173 Missense_Mutation p.G506E 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-BF-AAP4-01 2 171259426 171259426 C T MYO3B Missense_Mutation p.S733L 0.12 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 2 179438540 179438540 G A TTN Missense_Mutation p.P24107S 0.36 TCGA-BF-AAP4-01 2 179446431 179446431 G A TTN Silent p.I22188I 0.23 TCGA-BF-AAP4-01 2 179456824 179456824 T G TTN Missense_Mutation p.H19936P 0.32 TCGA-BF-AAP4-01 2 179527992 179527992 C G TTN Splice_Site p.X12234_splice 0.29 TCGA-BF-AAP4-01 2 179527993 179527993 C T TTN Missense_Mutation p.V12234M 0.32 TCGA-BF-AAP4-01 2 179566288 179566288 G A TTN Missense_Mutation p.P10189S 0.09 TCGA-BF-AAP4-01 2 179585172 179585172 G A TTN Missense_Mutation p.H7773Y 0.15 TCGA-BF-AAP4-01 2 179590159 179590159 C T TTN Silent p.K6924K 0.30 TCGA-BF-AAP4-01 2 179593387 179593387 C T TTN Silent p.G6422G 0.46 TCGA-BF-AAP4-01 2 179600647 179600647 C T TTN Silent p.R4842R 0.12 TCGA-BF-AAP4-01 2 179611939 179611939 G A TTN Intron 0.10 TCGA-BF-AAP4-01 2 179622589 179622589 G A TTN Missense_Mutation p.S3453L 0.14 TCGA-BF-AAP4-01 2 179648923 179648923 G A TTN Silent p.F883F 0.15 TCGA-BF-AAP4-01 2 180310419 180310419 C T ZNF385B Missense_Mutation p.G318E 0.10 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP4-01 2 186669986 186669986 C T FSIP2 Missense_Mutation p.S5407F 0.41 probably_damaging(0.963) TCGA-BF-AAP4-01 2 186671008 186671008 G A FSIP2 Missense_Mutation p.D5748N 0.15 benign(0.016) TCGA-BF-AAP4-01 2 189875076 189875076 G A COL3A1 Missense_Mutation p.M1332I 0.27 unknown(0) TCGA-BF-AAP4-01 2 192228892 192228892 G A MYO1B Missense_Mutation p.E308K 0.15 deleterious(0.05) possibly_damaging(0.472) TCGA-BF-AAP4-01 2 196651804 196651804 G A DNAH7 Missense_Mutation p.P3603L 0.13 deleterious(0.01) probably_damaging(0.943) TCGA-BF-AAP4-01 2 197639909 197639909 G A GTF3C3 Missense_Mutation p.L588F 0.28 tolerated(0.14) benign(0.345) TCGA-BF-AAP4-01 2 197641216 197641216 G A GTF3C3 Silent p.L510L 0.18 TCGA-BF-AAP4-01 2 20200214 20200214 T A MATN3 Nonsense_Mutation p.K386* 0.15 TCGA-BF-AAP4-01 2 20201775 20201775 G A MATN3 Missense_Mutation p.S328F 0.19 deleterious(0.03) benign(0.081) TCGA-BF-AAP4-01 2 202073945 202073945 G A CASP10 Missense_Mutation p.G359R 0.28 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 2 204260488 204260488 C T ABI2 Missense_Mutation p.P273S 0.39 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 2 207174642 207174642 C T ZDBF2 Missense_Mutation p.S1797F 0.13 deleterious(0.01) possibly_damaging(0.485) TCGA-BF-AAP4-01 2 212248369 212248369 G A ERBB4 Missense_Mutation p.P1300S 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.886) TCGA-BF-AAP4-01 2 21225677 21225677 C T APOB Missense_Mutation p.G4206E 0.11 probably_damaging(0.982) TCGA-BF-AAP4-01 2 21228558 21228558 C T APOB Missense_Mutation p.D3728N 0.18 benign(0.102) TCGA-BF-AAP4-01 2 219319668 219319668 G A USP37 Silent p.T975T 0.14 TCGA-BF-AAP4-01 2 220023073 220023073 C T NHEJ1 Silent p.L4L 0.17 TCGA-BF-AAP4-01 2 220073662 220073662 T C ZFAND2B Intron 0.26 TCGA-BF-AAP4-01 2 220333995 220333995 G A SPEG Silent p.K1203K 0.23 TCGA-BF-AAP4-01 2 220354562 220354562 C T SPEG Missense_Mutation p.S2941F 0.24 benign(0.012) TCGA-BF-AAP4-01 2 220366263 220366263 C T GMPPA Silent p.F68F 0.28 TCGA-BF-AAP4-01 2 220493975 220493975 G A SLC4A3 Silent p.K109K 0.48 TCGA-BF-AAP4-01 2 227979394 227979394 C T COL4A4 Missense_Mutation p.G170R 0.18 probably_damaging(1) TCGA-BF-AAP4-01 2 227979395 227979395 C T COL4A4 Silent p.K169K 0.18 TCGA-BF-AAP4-01 2 232263078 232263078 C T B3GNT7 Silent p.T216T 0.17 TCGA-BF-AAP4-01 2 232458313 232458313 G A C2orf57 Silent p.V217V 0.10 TCGA-BF-AAP4-01 2 237406119 237406119 T C IQCA1 Missense_Mutation p.K8R 0.29 tolerated(0.7) benign(0.003) TCGA-BF-AAP4-01 2 239049659 239049659 G A KLHL30 Silent p.V88V 0.18 TCGA-BF-AAP4-01 2 24199857 24199857 T C UBXN2A Silent p.L67L 0.24 TCGA-BF-AAP4-01 2 242062232 242062232 G A PASK Missense_Mutation p.S996F 0.24 deleterious(0) probably_damaging(0.955) TCGA-BF-AAP4-01 2 27150167 27150167 C T DPYSL5 Missense_Mutation p.S156L 0.26 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 2 27729357 27729357 G A GCKR Silent p.L293L 0.08 TCGA-BF-AAP4-01 2 27729358 27729358 G A GCKR Missense_Mutation p.E294K 0.07 deleterious(0.02) benign(0.423) TCGA-BF-AAP4-01 2 27802872 27802872 C T C2orf16 Missense_Mutation p.L1145F 0.26 tolerated(0.06) probably_damaging(0.997) TCGA-BF-AAP4-01 2 29404440 29404440 C T CLIP4 Missense_Mutation p.S600L 0.24 tolerated(0.09) benign(0.132) TCGA-BF-AAP4-01 2 3745017 3745017 G A ALLC Missense_Mutation p.R274Q 0.15 tolerated(1) benign(0.002) TCGA-BF-AAP4-01 2 46739088 46739088 G A ATP6V1E2 3'UTR 0.33 TCGA-BF-AAP4-01 2 48915389 48915389 G A LHCGR Missense_Mutation p.P516L 0.16 deleterious(0) probably_damaging(0.914) TCGA-BF-AAP4-01 2 54482263 54482263 C T TSPYL6 Silent p.R342R 0.09 TCGA-BF-AAP4-01 2 54482439 54482439 C T TSPYL6 Missense_Mutation p.E284K 0.17 deleterious(0) probably_damaging(0.969) TCGA-BF-AAP4-01 2 56420054 56420055 CC T CCDC85A Frame_Shift_Del p.P240Lfs*71 0.30 TCGA-BF-AAP4-01 2 64863731 64863731 G A SERTAD2 Missense_Mutation p.P92L 0.14 deleterious(0) possibly_damaging(0.573) TCGA-BF-AAP4-01 2 64863732 64863732 G A SERTAD2 Missense_Mutation p.P92S 0.12 tolerated(0.06) possibly_damaging(0.449) TCGA-BF-AAP4-01 2 71039584 71039584 C T CLEC4F Missense_Mutation p.E512K 0.37 deleterious(0) probably_damaging(0.98) TCGA-BF-AAP4-01 2 71887769 71887769 C T DYSF Missense_Mutation p.P1664L 0.15 deleterious(0) probably_damaging(0.957) TCGA-BF-AAP4-01 2 71913701 71913701 G A DYSF 3'UTR 0.28 TCGA-BF-AAP4-01 2 79312667 79312667 G A REG1B Silent p.S128S 0.15 TCGA-BF-AAP4-01 2 79312668 79312668 G A REG1B Missense_Mutation p.S128F 0.18 deleterious(0) benign(0.006) TCGA-BF-AAP4-01 2 85662883 85662883 C T SH2D6 Missense_Mutation p.P116L 0.21 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 2 85662884 85662884 C T SH2D6 Silent p.P116P 0.20 TCGA-BF-AAP4-01 2 85893865 85893865 C T SFTPB Missense_Mutation p.D102N 0.32 tolerated(0.06) benign(0.104) TCGA-BF-AAP4-01 2 86716534 86716534 C T KDM3A Missense_Mutation p.P1136L 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 2 87085301 87085301 C T CD8B Silent p.R94R 0.21 TCGA-BF-AAP4-01 2 89339870 89339870 G A IGKV1-12 Missense_Mutation p.L68F 0.26 tolerated(0.05) benign(0.048) TCGA-BF-AAP4-01 2 89459324 89459324 C T IGKV6-21 Missense_Mutation p.G85R 0.14 deleterious(0.03) possibly_damaging(0.857) TCGA-BF-AAP4-01 2 90229068 90229068 G A IGKV1D-42 Missense_Mutation p.D2N 0.11 tolerated_low_confidence(0.09) benign(0.025) TCGA-BF-AAP4-01 2 95511134 95511134 C T RNU6-1320P 3'Flank 0.06 TCGA-BF-AAP4-01 2 96789884 96789884 G A ASTL Missense_Mutation p.P334L 0.31 tolerated_low_confidence(0.82) benign(0.05) TCGA-BF-AAP4-01 2 99412625 99412625 C T KIAA1211L Missense_Mutation p.E903K 0.17 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP4-01 3 114069630 114069630 G A ZBTB20 Missense_Mutation p.S432F 0.32 deleterious(0) probably_damaging(0.962) TCGA-BF-AAP4-01 3 121305372 121305372 C T ARGFX Silent p.A291A 0.20 TCGA-BF-AAP4-01 3 121341732 121341732 G A FBXO40 Missense_Mutation p.D486N 0.16 deleterious(0.05) probably_damaging(0.991) TCGA-BF-AAP4-01 3 121414883 121414883 G A GOLGB1 Missense_Mutation p.S1496F 0.13 probably_damaging(1) TCGA-BF-AAP4-01 3 121527805 121527805 G A IQCB1 Missense_Mutation p.L149F 0.13 tolerated(0.06) benign(0.038) TCGA-BF-AAP4-01 3 121838342 121838342 G A CD86 Silent p.S317S 0.14 TCGA-BF-AAP4-01 3 122003771 122003771 G A CASR Silent p.R1000R 0.14 TCGA-BF-AAP4-01 3 124896807 124896807 A G SLC12A8 Silent p.G134G 0.16 TCGA-BF-AAP4-01 3 1262415 1262415 G A CNTN6 Missense_Mutation p.D34N 0.36 tolerated(0.29) benign(0.198) TCGA-BF-AAP4-01 3 129226513 129226513 C T IFT122 Missense_Mutation p.P983S 0.16 tolerated(0.58) benign(0.003) TCGA-BF-AAP4-01 3 129695924 129695924 G A TRH Silent p.G198G 0.19 TCGA-BF-AAP4-01 3 133114857 133114857 C T TMEM108 3'UTR 0.31 TCGA-BF-AAP4-01 3 133670093 133670093 G A SLCO2A1 Missense_Mutation p.P274S 0.24 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 3 141289818 141289818 C T RASA2 Nonsense_Mutation p.R310* 0.15 TCGA-BF-AAP4-01 3 14199509 14199509 A G XPC Splice_Site p.X624_splice 0.36 TCGA-BF-AAP4-01 3 142172050 142172050 G A ATR Missense_Mutation p.P2561S 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 3 146171822 146171822 G A PLSCR2 Silent p.I223I 0.15 TCGA-BF-AAP4-01 3 148601470 148601470 G A CPA3 Silent p.T283T 0.16 TCGA-BF-AAP4-01 3 148744552 148744552 T A GYG1 Missense_Mutation p.D295E 0.14 tolerated(0.91) benign(0) TCGA-BF-AAP4-01 3 150877762 150877762 G A MED12L Silent p.S327S 0.15 TCGA-BF-AAP4-01 3 154033018 154033018 A T DHX36 Silent p.L140L 0.22 TCGA-BF-AAP4-01 3 159713192 159713192 C T IL12A Missense_Mutation p.A203V 0.13 deleterious(0.02) probably_damaging(0.987) TCGA-BF-AAP4-01 3 16237348 16237348 C T GALNT15 Silent p.L207L 0.09 TCGA-BF-AAP4-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.13 deleterious(0) probably_damaging(0.929) TCGA-BF-AAP4-01 3 182665078 182665078 A C DCUN1D1 Silent p.L216L 0.11 TCGA-BF-AAP4-01 3 183014813 183014813 G A MCF2L2 Missense_Mutation p.P483L 0.22 tolerated(0.97) benign(0.002) TCGA-BF-AAP4-01 3 185252835 185252835 G A LIPH Silent p.L45L 0.13 TCGA-BF-AAP4-01 3 186965010 186965010 G A MASP1 Intron 0.30 TCGA-BF-AAP4-01 3 190028009 190028009 C T CLDN1 Missense_Mutation p.G141D 0.27 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP4-01 3 190120177 190120177 G A CLDN16 Missense_Mutation p.D126N 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-BF-AAP4-01 3 196210696 196210696 G A RNF168 Missense_Mutation p.P209S 0.28 tolerated(0.4) benign(0) TCGA-BF-AAP4-01 3 196288156 196288156 G A WDR53 Missense_Mutation p.P64L 0.18 deleterious(0.02) probably_damaging(0.937) TCGA-BF-AAP4-01 3 26751574 26751574 G A LRRC3B Silent p.K137K 0.23 TCGA-BF-AAP4-01 3 3081863 3081863 C T CNTN4 Missense_Mutation p.P769L 0.23 deleterious(0) probably_damaging(0.946) TCGA-BF-AAP4-01 3 36484978 36484978 G A STAC Silent p.E78E 0.37 TCGA-BF-AAP4-01 3 36874014 36874014 C T TRANK1 Missense_Mutation p.E2310K 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-BF-AAP4-01 3 39227108 39227108 C T XIRP1 Missense_Mutation p.E1277K 0.33 tolerated(0.07) benign(0.265) TCGA-BF-AAP4-01 3 42754712 42754712 T C CCDC13 Missense_Mutation p.I605M 0.18 tolerated(0.72) benign(0.003) TCGA-BF-AAP4-01 3 44951742 44951742 G A TGM4 Silent p.R496R 0.15 TCGA-BF-AAP4-01 3 46399167 46399167 C T CCR2 Missense_Mutation p.S50L 0.15 deleterious(0.04) possibly_damaging(0.641) TCGA-BF-AAP4-01 3 46482917 46482917 C T LTF Silent p.Q571Q 0.32 TCGA-BF-AAP4-01 3 46492006 46492006 C T LTF Nonsense_Mutation p.W287* 0.17 TCGA-BF-AAP4-01 3 47281409 47281409 G A KIF9 Intron 0.25 TCGA-BF-AAP4-01 3 49163917 49163917 G A LAMB2 Missense_Mutation p.P678S 0.13 tolerated(0.18) benign(0.007) TCGA-BF-AAP4-01 3 50334069 50334069 C T NAT6 Missense_Mutation p.G298R 0.26 deleterious(0.01) possibly_damaging(0.663) TCGA-BF-AAP4-01 3 50334070 50334070 C T NAT6 Silent p.R297R 0.26 TCGA-BF-AAP4-01 3 50421648 50421648 G A CACNA2D2 Missense_Mutation p.P211S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 3 5241335 5241335 C T EDEM1 Missense_Mutation p.S214L 0.13 deleterious(0) probably_damaging(0.934) TCGA-BF-AAP4-01 3 53835283 53835283 G A CACNA1D Missense_Mutation p.G1767R 0.20 tolerated_low_confidence(0.08) benign(0.186) TCGA-BF-AAP4-01 3 64527229 64527229 G A ADAMTS9 Silent p.F1755F 0.11 TCGA-BF-AAP4-01 3 7620325 7620325 G A GRM7 Missense_Mutation p.D578N 0.12 tolerated(0.08) benign(0.008) TCGA-BF-AAP4-01 3 78666916 78666916 G A ROBO1 Missense_Mutation p.S1384F 0.20 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP4-01 3 87302552 87302552 A T CHMP2B Splice_Site p.X142_splice 0.10 TCGA-BF-AAP4-01 3 9759878 9759878 C T CPNE9 Missense_Mutation p.S366F 0.30 deleterious(0) probably_damaging(0.946) TCGA-BF-AAP4-01 3 97868879 97868879 C A OR5H14 Missense_Mutation p.S217Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP4-01 3 97869020 97869020 C T OR5H14 Missense_Mutation p.S264F 0.10 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP4-01 3 98073245 98073245 C T OR5K4 Missense_Mutation p.P183L 0.11 deleterious(0.01) possibly_damaging(0.831) TCGA-BF-AAP4-01 4 114260454 114260454 C T ANK2 Missense_Mutation p.S1290F 0.15 probably_damaging(1) TCGA-BF-AAP4-01 4 128637601 128637601 C T INTU 3'UTR 0.27 TCGA-BF-AAP4-01 4 134071282 134071282 C T PCDH10 5'UTR 0.08 TCGA-BF-AAP4-01 4 134072324 134072324 G A PCDH10 Silent p.K343K 0.33 TCGA-BF-AAP4-01 4 134072325 134072325 G A PCDH10 Missense_Mutation p.V344M 0.33 deleterious(0) probably_damaging(0.974) TCGA-BF-AAP4-01 4 140625314 140625314 C T MGST2 3'UTR 0.19 TCGA-BF-AAP4-01 4 148406766 148406766 G A EDNRA Intron 0.19 TCGA-BF-AAP4-01 4 148406974 148406974 C T EDNRA Silent p.F47F 0.20 TCGA-BF-AAP4-01 4 155242164 155242164 G A DCHS2 Missense_Mutation p.L1008F 0.10 deleterious(0.02) possibly_damaging(0.585) TCGA-BF-AAP4-01 4 155665585 155665585 G T LRAT Missense_Mutation p.R36M 0.11 tolerated(0.07) benign(0.017) TCGA-BF-AAP4-01 4 162376165 162376165 G A FSTL5 Missense_Mutation p.T611I 0.34 deleterious(0.01) benign(0.226) TCGA-BF-AAP4-01 4 165962051 165962051 G A TRIM60 Missense_Mutation p.G276D 0.17 deleterious(0.03) benign(0.086) TCGA-BF-AAP4-01 4 174254133 174254133 G A HMGB2 Silent p.L104L 0.29 TCGA-BF-AAP4-01 4 177098752 177098752 C T WDR17 Missense_Mutation p.L1266F 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAP4-01 4 186536214 186536214 C T SORBS2 Silent p.P1013P 0.15 TCGA-BF-AAP4-01 4 20852176 20852176 C T KCNIP4 Missense_Mutation p.G93E 0.12 deleterious(0) possibly_damaging(0.684) TCGA-BF-AAP4-01 4 2181168 2181168 G A POLN Missense_Mutation p.P349L 0.26 deleterious(0) probably_damaging(0.938) TCGA-BF-AAP4-01 4 24541796 24541796 A C DHX15 Missense_Mutation p.M574R 0.13 deleterious(0) possibly_damaging(0.648) TCGA-BF-AAP4-01 4 25379078 25379078 C T ANAPC4 Missense_Mutation p.S10F 0.27 deleterious(0) possibly_damaging(0.761) TCGA-BF-AAP4-01 4 3021410 3021410 T G GRK4 Missense_Mutation p.L262V 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP4-01 4 3424279 3424279 C T RGS12 Silent p.F1005F 0.21 TCGA-BF-AAP4-01 4 36168602 36168602 C T ARAP2 Missense_Mutation p.R642Q 0.15 deleterious(0) possibly_damaging(0.704) TCGA-BF-AAP4-01 4 41747856 41747856 T A PHOX2B Nonsense_Mutation p.K305* 0.38 TCGA-BF-AAP4-01 4 48993547 48993547 G A CWH43 Silent p.L104L 0.28 TCGA-BF-AAP4-01 4 48996685 48996685 G A CWH43 Silent p.T187T 0.10 TCGA-BF-AAP4-01 4 48996686 48996686 G T CWH43 Missense_Mutation p.G188W 0.09 deleterious(0.01) possibly_damaging(0.694) TCGA-BF-AAP4-01 4 62812688 62812688 G A LPHN3 Missense_Mutation p.E758K 0.22 deleterious(0.03) probably_damaging(0.987) TCGA-BF-AAP4-01 4 68928600 68928600 A G TMPRSS11F Intron 0.09 TCGA-BF-AAP4-01 4 70465060 70465060 G A UGT2A1 Silent p.I466I 0.14 TCGA-BF-AAP4-01 4 76804200 76804200 A G PPEF2 Missense_Mutation p.L271P 0.19 deleterious(0) probably_damaging(0.983) TCGA-BF-AAP4-01 4 77661336 77661336 G A SHROOM3 Silent p.E670E 0.24 TCGA-BF-AAP4-01 4 77661602 77661602 G A SHROOM3 Missense_Mutation p.R759K 0.27 deleterious(0.03) benign(0.318) TCGA-BF-AAP4-01 4 7840383 7840383 G A AFAP1 Silent p.L198L 0.16 TCGA-BF-AAP4-01 4 786253 786253 G A CPLX1 Missense_Mutation p.R59C 0.11 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 4 80328371 80328371 A G GK2 Silent p.V328V 0.18 TCGA-BF-AAP4-01 4 84374643 84374643 G A HELQ Silent p.S251S 0.24 TCGA-BF-AAP4-01 4 86938452 86938452 C T MAPK10 Missense_Mutation p.D442N 0.13 deleterious_low_confidence(0) benign(0.288) TCGA-BF-AAP4-01 5 10290667 10290667 C T CMBL Missense_Mutation p.G70R 0.11 deleterious(0.03) probably_damaging(0.942) TCGA-BF-AAP4-01 5 11346543 11346543 G A CTNND2 Silent p.L523L 0.28 TCGA-BF-AAP4-01 5 114466396 114466396 G A TRIM36 Silent p.F575F 0.22 TCGA-BF-AAP4-01 5 114466397 114466397 A T TRIM36 Missense_Mutation p.F575Y 0.22 tolerated(1) benign(0.137) TCGA-BF-AAP4-01 5 121761116 121761116 G A SNCAIP Missense_Mutation p.A358T 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 5 121786761 121786761 C T SNCAIP Missense_Mutation p.S740F 0.16 deleterious(0) possibly_damaging(0.866) TCGA-BF-AAP4-01 5 121787024 121787024 C T SNCAIP Missense_Mutation p.P828S 0.21 tolerated(0.44) benign(0.001) TCGA-BF-AAP4-01 5 129520897 129520897 C T CHSY3 Silent p.L688L 0.33 TCGA-BF-AAP4-01 5 13700854 13700854 G A DNAH5 Missense_Mutation p.L4540F 0.13 possibly_damaging(0.849) TCGA-BF-AAP4-01 5 13714630 13714630 G A DNAH5 Silent p.L4337L 0.25 TCGA-BF-AAP4-01 5 137426807 137426807 G A WNT8A 3'UTR 0.17 TCGA-BF-AAP4-01 5 137754706 137754706 C T KDM3B Missense_Mutation p.P1167L 0.22 tolerated(0.43) benign(0.003) TCGA-BF-AAP4-01 5 13794139 13794139 C T DNAH5 Missense_Mutation p.R2639Q 0.25 possibly_damaging(0.553) TCGA-BF-AAP4-01 5 140215547 140215547 G A PCDHA7 Missense_Mutation p.E527K 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.692) TCGA-BF-AAP4-01 5 140503056 140503056 C T PCDHB4 Silent p.P492P 0.15 TCGA-BF-AAP4-01 5 140503091 140503091 C T PCDHB4 Missense_Mutation p.S504F 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BF-AAP4-01 5 140516789 140516789 G C PCDHB5 Silent p.V591V 0.12 TCGA-BF-AAP4-01 5 140573706 140573706 C T PCDHB10 Silent p.F527F 0.28 TCGA-BF-AAP4-01 5 140746024 140746024 C T PCDHGA5 Silent p.I709I 0.16 TCGA-BF-AAP4-01 5 143368 143368 C T PLEKHG4B Missense_Mutation p.P206S 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-BF-AAP4-01 5 145393444 145393444 G A SH3RF2 Silent p.R293R 0.09 TCGA-BF-AAP4-01 5 145895479 145895479 C T GPR151 Nonsense_Mutation p.W66* 0.14 TCGA-BF-AAP4-01 5 146236135 146236135 C T PPP2R2B Intron 0.27 TCGA-BF-AAP4-01 5 148207108 148207108 C T ADRB2 Silent p.G238G 0.32 TCGA-BF-AAP4-01 5 149585110 149585110 T C SLC6A7 Missense_Mutation p.M542T 0.39 deleterious(0.05) possibly_damaging(0.899) TCGA-BF-AAP4-01 5 150519784 150519784 G A ANXA6 Silent p.S13S 0.09 TCGA-BF-AAP4-01 5 150885428 150885428 C T FAT2 Missense_Mutation p.D4250N 0.12 probably_damaging(0.965) TCGA-BF-AAP4-01 5 154244797 154244797 C T CNOT8 Missense_Mutation p.R55C 0.28 deleterious(0) probably_damaging(0.973) TCGA-BF-AAP4-01 5 156635919 156635919 G A ITK Missense_Mutation p.G53E 0.38 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP4-01 5 160033983 160033983 T G ATP10B Silent p.P983P 0.11 TCGA-BF-AAP4-01 5 167625988 167625988 A G TENM2 Missense_Mutation p.T1011A 0.33 tolerated(0.14) benign(0.297) TCGA-BF-AAP4-01 5 167674701 167674701 C T TENM2 Missense_Mutation p.R2253W 0.07 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 5 169026091 169026091 C T SPDL1 Nonsense_Mutation p.Q418* 0.18 TCGA-BF-AAP4-01 5 174869773 174869773 G A DRD1 Silent p.S110S 0.15 TCGA-BF-AAP4-01 5 176011454 176011454 G A CDHR2 Silent p.T724T 0.18 TCGA-BF-AAP4-01 5 176026534 176026534 G A GPRIN1 Missense_Mutation p.P101L 0.09 tolerated(0.08) possibly_damaging(0.728) TCGA-BF-AAP4-01 5 178154053 178154053 C A ZNF354A Missense_Mutation p.R36I 0.18 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP4-01 5 178310847 178310847 C T ZNF354B Missense_Mutation p.P465L 0.22 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 5 178413884 178413884 G T GRM6 Silent p.G485G 0.12 TCGA-BF-AAP4-01 5 178541087 178541087 G A ADAMTS2 Silent p.P1139P 0.24 TCGA-BF-AAP4-01 5 180219986 180219986 G A MGAT1 5'UTR 0.30 TCGA-BF-AAP4-01 5 24537654 24537654 C T CDH10 Missense_Mutation p.E121K 0.10 tolerated(0.19) probably_damaging(0.933) TCGA-BF-AAP4-01 5 26885885 26885885 C T CDH9 Missense_Mutation p.D574N 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-BF-AAP4-01 5 32093118 32093118 A T PDZD2 Missense_Mutation p.K2611N 0.15 deleterious(0.04) possibly_damaging(0.698) TCGA-BF-AAP4-01 5 35910588 35910588 C T CAPSL Missense_Mutation p.M65I 0.24 tolerated(0.23) benign(0) TCGA-BF-AAP4-01 5 36039596 36039596 G A UGT3A2 Missense_Mutation p.P353L 0.31 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP4-01 5 40964843 40964843 G A C7 Missense_Mutation p.D584N 0.08 tolerated(0.51) benign(0.03) TCGA-BF-AAP4-01 5 41048463 41048463 C T MROH2B Nonsense_Mutation p.W549* 0.24 TCGA-BF-AAP4-01 5 43492334 43492334 G A C5orf34 Silent p.H521H 0.30 TCGA-BF-AAP4-01 5 45396713 45396713 C T HCN1 Missense_Mutation p.D371N 0.17 deleterious(0) benign(0.438) TCGA-BF-AAP4-01 5 54320183 54320183 C T GZMK Silent p.F11F 0.09 TCGA-BF-AAP4-01 5 54320529 54320529 C T GZMK Missense_Mutation p.H36Y 0.30 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP4-01 5 55081557 55081557 G A DDX4 Missense_Mutation p.G241E 0.22 tolerated(0.15) probably_damaging(1) TCGA-BF-AAP4-01 5 55209315 55209315 G A IL31RA Silent p.E551E 0.24 TCGA-BF-AAP4-01 5 56778196 56778196 G A ACTBL2 Silent p.P113P 0.14 TCGA-BF-AAP4-01 5 66479858 66479858 G A CD180 Silent p.L271L 0.11 TCGA-BF-AAP4-01 5 71493458 71493458 G A MAP1B Missense_Mutation p.E1426K 0.10 benign(0.194) TCGA-BF-AAP4-01 5 71494461 71494461 C T MAP1B Missense_Mutation p.S1760F 0.22 possibly_damaging(0.825) TCGA-BF-AAP4-01 5 71495717 71495717 G A MAP1B Missense_Mutation p.D2179N 0.24 probably_damaging(0.999) TCGA-BF-AAP4-01 5 79026810 79026810 C T CMYA5 Missense_Mutation p.S741L 0.41 benign(0) TCGA-BF-AAP4-01 5 79335941 79335941 G C THBS4 Missense_Mutation p.G44R 0.19 tolerated(0.46) benign(0.134) TCGA-BF-AAP4-01 5 79617225 79617225 G A SPZ1 Silent p.L397L 0.23 TCGA-BF-AAP4-01 5 79733106 79733106 T A ZFYVE16 Missense_Mutation p.I201N 0.24 tolerated(0.26) benign(0.004) TCGA-BF-AAP4-01 5 79854457 79854457 G A ANKRD34B Missense_Mutation p.S461L 0.13 deleterious(0.04) benign(0.002) TCGA-BF-AAP4-01 5 80724428 80724428 G A SSBP2 Silent p.F344F 0.34 TCGA-BF-AAP4-01 5 80724437 80724437 C T SSBP2 Silent p.G341G 0.16 TCGA-BF-AAP4-01 5 83239382 83239382 G A EDIL3 Silent p.F433F 0.35 TCGA-BF-AAP4-01 5 89924383 89924383 G A GPR98 Missense_Mutation p.E415K 0.11 possibly_damaging(0.636) TCGA-BF-AAP4-01 5 90124894 90124894 C T GPR98 Missense_Mutation p.S5501F 0.30 possibly_damaging(0.831) TCGA-BF-AAP4-01 5 94820436 94820437 AG - TTC37 Frame_Shift_Del p.C1349Hfs*7 0.21 TCGA-BF-AAP4-01 5 94989931 94989931 C T RFESD Missense_Mutation p.R109C 0.13 deleterious(0.04) probably_damaging(0.986) TCGA-BF-AAP4-01 6 100868688 100868688 G A SIM1 Missense_Mutation p.S382F 0.18 tolerated(0.18) benign(0.438) TCGA-BF-AAP4-01 6 102503449 102503449 G A GRIK2 Silent p.L852L 0.15 TCGA-BF-AAP4-01 6 105474334 105474334 G A LIN28B Silent p.Q120Q 0.23 TCGA-BF-AAP4-01 6 105572424 105572424 G A BVES Nonsense_Mutation p.Q216* 0.15 TCGA-BF-AAP4-01 6 105572425 105572425 G A BVES Silent p.F215F 0.14 TCGA-BF-AAP4-01 6 107035567 107035567 G A RTN4IP1 Missense_Mutation p.S326L 0.21 tolerated(0.06) benign(0.423) TCGA-BF-AAP4-01 6 10894339 10894339 C T SYCP2L Nonsense_Mutation p.Q80* 0.11 TCGA-BF-AAP4-01 6 111214156 111214156 C T AMD1 Missense_Mutation p.S251F 0.23 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP4-01 6 111697759 111697759 G A REV3L Missense_Mutation p.S600L 0.18 tolerated(0.22) benign(0.06) TCGA-BF-AAP4-01 6 111983118 111983118 C T FYN Missense_Mutation p.E480K 0.25 deleterious(0) probably_damaging(0.992) TCGA-BF-AAP4-01 6 112528288 112528288 C T LAMA4 Missense_Mutation p.G119E 0.17 deleterious(0.02) probably_damaging(0.956) TCGA-BF-AAP4-01 6 117127802 117127802 C T GPRC6A Missense_Mutation p.E356K 0.22 tolerated(0.05) possibly_damaging(0.838) TCGA-BF-AAP4-01 6 119522476 119522476 T C MAN1A1 Missense_Mutation p.K385E 0.17 deleterious(0) possibly_damaging(0.761) TCGA-BF-AAP4-01 6 136599418 136599418 C T BCLAF1 Missense_Mutation p.E201K 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-BF-AAP4-01 6 137332452 137332452 G A IL20RA Missense_Mutation p.S121F 0.23 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP4-01 6 151673036 151673036 G A AKAP12 Silent p.E1170E 0.18 TCGA-BF-AAP4-01 6 151894350 151894350 G A CCDC170 Silent p.R272R 0.18 TCGA-BF-AAP4-01 6 152719846 152719846 C T SYNE1 Missense_Mutation p.E2420K 0.16 benign(0.045) TCGA-BF-AAP4-01 6 160225643 160225643 C T PNLDC1 Silent p.I134I 0.27 TCGA-BF-AAP4-01 6 160998298 160998298 C T LPA Missense_Mutation p.D1501N 0.22 deleterious(0.01) possibly_damaging(0.562) TCGA-BF-AAP4-01 6 161139852 161139852 G A PLG Missense_Mutation p.E360K 0.11 tolerated(0.1) benign(0.104) TCGA-BF-AAP4-01 6 24596499 24596499 C T KIAA0319 Missense_Mutation p.E135K 0.22 tolerated(0.09) benign(0.091) TCGA-BF-AAP4-01 6 28269097 28269097 T C PGBD1 Missense_Mutation p.V489A 0.21 deleterious(0.03) benign(0.259) TCGA-BF-AAP4-01 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.44 deleterious(0.02) benign(0.022) TCGA-BF-AAP4-01 6 29627101 29627101 T C MOG Missense_Mutation p.F32L 0.35 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP4-01 6 29797367 29797367 C T HLA-G Silent p.T264T 0.22 TCGA-BF-AAP4-01 6 31678183 31678183 T A LY6G6F Nonsense_Mutation p.L286* 0.16 TCGA-BF-AAP4-01 6 32800592 32800592 G A TAP2 Missense_Mutation p.R319W 0.29 deleterious(0.03) benign(0.052) TCGA-BF-AAP4-01 6 33144965 33144965 C T COL11A2 Missense_Mutation p.G584E 0.17 probably_damaging(0.969) TCGA-BF-AAP4-01 6 34003631 34003631 C T GRM4 Silent p.S752S 0.23 TCGA-BF-AAP4-01 6 35434135 35434135 G A FANCE 3'UTR 0.35 TCGA-BF-AAP4-01 6 35765036 35765036 G A CLPS Silent p.V10V 0.12 TCGA-BF-AAP4-01 6 36651897 36651897 G A CDKN1A Missense_Mutation p.D7N 0.36 tolerated(0.5) benign(0.01) TCGA-BF-AAP4-01 6 38994413 38994413 G A DNAH8 Silent p.Q4385Q 0.17 TCGA-BF-AAP4-01 6 41555198 41555198 C T FOXP4 Missense_Mutation p.H274Y 0.28 deleterious(0.02) possibly_damaging(0.837) TCGA-BF-AAP4-01 6 42832594 42832594 C T GLTSCR1L Missense_Mutation p.H884Y 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.628) TCGA-BF-AAP4-01 6 46826090 46826090 C T GPR116 Missense_Mutation p.V1184M 0.14 deleterious(0.05) possibly_damaging(0.612) TCGA-BF-AAP4-01 6 49936570 49936570 T A DEFB113 Missense_Mutation p.K23N 0.19 deleterious_low_confidence(0.03) benign(0.234) TCGA-BF-AAP4-01 6 54805397 54805397 C T FAM83B Missense_Mutation p.S543F 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-BF-AAP4-01 6 56006596 56006596 C T COL21A1 Missense_Mutation p.R510Q 0.17 tolerated(0.51) benign(0.147) TCGA-BF-AAP4-01 6 57472424 57472424 C T PRIM2 3'UTR 0.08 TCGA-BF-AAP4-01 6 76660760 76660760 G A IMPG1 Missense_Mutation p.P448L 0.21 tolerated(1) benign(0.002) TCGA-BF-AAP4-01 6 79655163 79655163 G A PHIP Missense_Mutation p.P1561L 0.17 tolerated_low_confidence(0.18) benign(0.007) TCGA-BF-AAP4-01 6 88854157 88854157 C T CNR1 Nonsense_Mutation p.W279* 0.13 TCGA-BF-AAP4-01 6 90347514 90347514 G A LYRM2 Silent p.L45L 0.13 TCGA-BF-AAP4-01 6 90347515 90347515 G A LYRM2 Silent p.Y44Y 0.13 TCGA-BF-AAP4-01 6 96651914 96651914 C T FUT9 Missense_Mutation p.P295S 0.15 tolerated(0.08) benign(0.303) TCGA-BF-AAP4-01 7 100184216 100184216 C T FBXO24 5'Flank 0.08 TCGA-BF-AAP4-01 7 100200194 100200194 C T PCOLCE Intron 0.31 TCGA-BF-AAP4-01 7 100483984 100483984 C T SRRT Silent p.A525A 0.10 TCGA-BF-AAP4-01 7 102920351 102920351 G A DPY19L2P2 RNA 0.09 TCGA-BF-AAP4-01 7 107427813 107427813 C T SLC26A3 Missense_Mutation p.E293K 0.22 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 7 110763497 110763497 C A LRRN3 Missense_Mutation p.N223K 0.14 tolerated(0.14) probably_damaging(1) TCGA-BF-AAP4-01 7 112462042 112462042 G A C7orf60 Silent p.T325T 0.26 TCGA-BF-AAP4-01 7 11450905 11450905 C T THSD7A Missense_Mutation p.G1243R 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 7 115889208 115889208 G A TES Missense_Mutation p.G83E 0.12 deleterious(0.04) benign(0.03) TCGA-BF-AAP4-01 7 123517139 123517139 C T HYAL4 Missense_Mutation p.S459F 0.18 tolerated(0.09) benign(0.004) TCGA-BF-AAP4-01 7 126173720 126173720 G A GRM8 Silent p.I572I 0.08 TCGA-BF-AAP4-01 7 128484771 128484771 C T FLNC Silent p.S1084S 0.33 TCGA-BF-AAP4-01 7 133692442 133692442 G A EXOC4 Silent p.L847L 0.34 TCGA-BF-AAP4-01 7 136849056 136849056 G A hsa-mir-490 Intron 0.23 TCGA-BF-AAP4-01 7 141427246 141427246 G A WEE2 Missense_Mutation p.R512K 0.25 tolerated(0.43) benign(0.216) TCGA-BF-AAP4-01 7 141672965 141672965 G A TAS2R38 Silent p.F175F 0.09 TCGA-BF-AAP4-01 7 141750634 141750634 T A MGAM Silent p.S925S 0.16 TCGA-BF-AAP4-01 7 141957531 141957531 G A PRSS58 5'UTR 0.28 TCGA-BF-AAP4-01 7 142197836 142197836 G T TRBV11-2 RNA 0.33 TCGA-BF-AAP4-01 7 142643296 142643296 C T KEL Missense_Mutation p.A438T 0.31 tolerated(0.2) probably_damaging(0.95) TCGA-BF-AAP4-01 7 142749631 142749631 C T OR6V1 Missense_Mutation p.S65F 0.31 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP4-01 7 143048886 143048886 C T CLCN1 Missense_Mutation p.P932L 0.42 tolerated_low_confidence(0.14) benign(0.009) TCGA-BF-AAP4-01 7 143092237 143092237 C T EPHA1 Missense_Mutation p.G708R 0.21 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 7 143095988 143095988 G A EPHA1 Missense_Mutation p.L348F 0.31 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP4-01 7 143806941 143806941 G A OR2A2 Missense_Mutation p.R89K 0.25 tolerated(1) benign(0.003) TCGA-BF-AAP4-01 7 148963673 148963673 A T ZNF783 Missense_Mutation p.Q91L 0.28 deleterious(0.03) benign(0.144) TCGA-BF-AAP4-01 7 149492369 149492369 G A SSPO RNA 0.34 TCGA-BF-AAP4-01 7 149505376 149505376 C T SSPO RNA 0.25 TCGA-BF-AAP4-01 7 150174541 150174541 G A GIMAP8 Silent p.T557T 0.07 TCGA-BF-AAP4-01 7 150390069 150390069 C T GIMAP2 Missense_Mutation p.S232L 0.11 tolerated(0.06) possibly_damaging(0.568) TCGA-BF-AAP4-01 7 150747593 150747593 C T ASIC3 Silent p.I237I 0.32 TCGA-BF-AAP4-01 7 152012399 152012399 G A KMT2C Silent p.Y138Y 0.11 TCGA-BF-AAP4-01 7 1522273 1522273 G A INTS1 Silent p.F1204F 0.09 TCGA-BF-AAP4-01 7 154561149 154561149 C T DPP6 Silent p.I302I 0.11 TCGA-BF-AAP4-01 7 154876005 154876005 C T HTR5A Silent p.F294F 0.22 TCGA-BF-AAP4-01 7 156480849 156480849 C T LMBR1 Missense_Mutation p.R421K 0.14 tolerated(0.17) probably_damaging(0.963) TCGA-BF-AAP4-01 7 17382579 17382579 C T AHR Missense_Mutation p.A813V 0.29 tolerated_low_confidence(0.08) benign(0.013) TCGA-BF-AAP4-01 7 20739705 20739705 G A ABCB5 Missense_Mutation p.E762K 0.17 deleterious(0.01) possibly_damaging(0.89) TCGA-BF-AAP4-01 7 28758461 28758461 C T CREB5 Missense_Mutation p.P186S 0.14 tolerated(0.19) probably_damaging(0.998) TCGA-BF-AAP4-01 7 31913016 31913016 C T PDE1C Silent p.V226V 0.31 TCGA-BF-AAP4-01 7 36662828 36662828 C T AOAH Missense_Mutation p.D184N 0.23 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 7 44180319 44180319 G A MYL7 Missense_Mutation p.S62F 0.28 deleterious(0) benign(0.246) TCGA-BF-AAP4-01 7 45103542 45103542 C T CCM2 Missense_Mutation p.P98L 0.08 deleterious(0) possibly_damaging(0.687) TCGA-BF-AAP4-01 7 48390259 48390259 G A ABCA13 Missense_Mutation p.M3408I 0.10 benign(0.027) TCGA-BF-AAP4-01 7 5967748 5967748 C T RSPH10B Intron 0.19 TCGA-BF-AAP4-01 7 73013896 73013896 G A MLXIPL Missense_Mutation p.S344F 0.38 deleterious(0.04) benign(0.288) TCGA-BF-AAP4-01 7 73731904 73731904 C T CLIP2 Missense_Mutation p.P10S 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 7 83764199 83764199 G A SEMA3A Missense_Mutation p.L61F 0.20 tolerated(0.1) benign(0.152) TCGA-BF-AAP4-01 7 84670007 84670007 C T SEMA3D Missense_Mutation p.G343E 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP4-01 7 86509799 86509799 G A KIAA1324L Silent p.S1026S 0.11 TCGA-BF-AAP4-01 7 87323230 87323230 C T RUNDC3B Missense_Mutation p.S82F 0.18 tolerated_low_confidence(0.14) benign(0.013) TCGA-BF-AAP4-01 7 8790737 8790737 G A NXPH1 Missense_Mutation p.D52N 0.08 tolerated(0.47) benign(0.051) TCGA-BF-AAP4-01 7 88423649 88423649 A G C7orf62 Missense_Mutation p.V203A 0.12 tolerated(0.57) benign(0.002) TCGA-BF-AAP4-01 7 88964645 88964645 G A ZNF804B Silent p.R783R 0.24 TCGA-BF-AAP4-01 7 92731863 92731863 G A SAMD9 Missense_Mutation p.P1183L 0.14 tolerated(0.1) benign(0) TCGA-BF-AAP4-01 7 92732759 92732759 G A SAMD9 Silent p.S884S 0.13 TCGA-BF-AAP4-01 7 92979308 92979308 T A CCDC132 Missense_Mutation p.M809K 0.15 deleterious(0) possibly_damaging(0.705) TCGA-BF-AAP4-01 7 93112128 93112128 G A CALCR Intron 0.31 TCGA-BF-AAP4-01 7 94034154 94034154 C T COL1A2 Missense_Mutation p.P128S 0.16 unknown(0) TCGA-BF-AAP4-01 7 94928355 94928355 T A PON1 Missense_Mutation p.E323D 0.18 tolerated(1) benign(0.007) TCGA-BF-AAP4-01 7 95216745 95216745 G A PDK4 Silent p.S322S 0.27 TCGA-BF-AAP4-01 7 99264276 99264276 C T CYP3A5 Missense_Mutation p.V157M 0.32 tolerated(0.07) possibly_damaging(0.865) TCGA-BF-AAP4-01 7 99358552 99358552 C T CYP3A4 Missense_Mutation p.G436R 0.26 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 8 101020657 101020657 G A RGS22 Silent p.L769L 0.15 TCGA-BF-AAP4-01 8 101075890 101075890 A G RGS22 Missense_Mutation p.L369S 0.19 tolerated(0.91) benign(0.002) TCGA-BF-AAP4-01 8 103231057 103231057 G A RRM2B Silent p.L223L 0.17 TCGA-BF-AAP4-01 8 104427664 104427664 G A DCAF13 Missense_Mutation p.R149K 0.17 deleterious_low_confidence(0.03) benign(0.003) TCGA-BF-AAP4-01 8 10465498 10465498 A G RP1L1 Missense_Mutation p.V2037A 0.14 unknown(0) TCGA-BF-AAP4-01 8 10469846 10469846 C T RP1L1 Missense_Mutation p.D588N 0.11 benign(0.212) TCGA-BF-AAP4-01 8 110476882 110476882 C T PKHD1L1 Silent p.P2607P 0.21 TCGA-BF-AAP4-01 8 110980790 110980790 C T KCNV1 Missense_Mutation p.E344K 0.11 tolerated(1) probably_damaging(0.995) TCGA-BF-AAP4-01 8 113259351 113259351 C T CSMD3 Missense_Mutation p.V3374I 0.46 tolerated(0.42) benign(0.007) TCGA-BF-AAP4-01 8 113403005 113403005 C T CSMD3 Missense_Mutation p.G1941E 0.12 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 8 11696012 11696012 C T FDFT1 Missense_Mutation p.S383F 0.18 tolerated(0.12) benign(0.013) TCGA-BF-AAP4-01 8 11995039 11995039 C T USP17L2 Missense_Mutation p.D411N 0.11 deleterious(0.02) benign(0.149) TCGA-BF-AAP4-01 8 11996129 11996129 G A USP17L2 Silent p.A47A 0.17 TCGA-BF-AAP4-01 8 120844732 120844732 G A TAF2 Missense_Mutation p.P25S 0.52 deleterious(0.04) benign(0.144) TCGA-BF-AAP4-01 8 131067024 131067024 T A ASAP1 Missense_Mutation p.R1115W 0.17 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 8 131848644 131848644 G A ADCY8 Missense_Mutation p.R852W 0.07 deleterious(0) probably_damaging(0.976) TCGA-BF-AAP4-01 8 131848645 131848645 G A ADCY8 Silent p.L851L 0.08 TCGA-BF-AAP4-01 8 131922025 131922025 C T ADCY8 Silent p.R523R 0.13 TCGA-BF-AAP4-01 8 132002722 132002722 C T ADCY8 Missense_Mutation p.D343N 0.12 deleterious(0) benign(0.395) TCGA-BF-AAP4-01 8 139158236 139158236 C T FAM135B Missense_Mutation p.G1169E 0.28 deleterious(0.04) possibly_damaging(0.771) TCGA-BF-AAP4-01 8 142517186 142517186 C T MROH5 Missense_Mutation p.V22M 0.15 deleterious_low_confidence(0) unknown(0) TCGA-BF-AAP4-01 8 144671218 144671218 G A EEF1D Missense_Mutation p.S345F 0.21 deleterious(0.02) possibly_damaging(0.615) TCGA-BF-AAP4-01 8 15480730 15480730 C T TUSC3 Nonsense_Mutation p.Q94* 0.17 TCGA-BF-AAP4-01 8 21767100 21767100 G A DOK2 Missense_Mutation p.P321S 0.12 tolerated(0.27) benign(0.018) TCGA-BF-AAP4-01 8 21862534 21862534 C T XPO7 Nonsense_Mutation p.R1067* 0.29 TCGA-BF-AAP4-01 8 21931257 21931257 G A DMTN Missense_Mutation p.G249E 0.16 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP4-01 8 22163522 22163522 C T PIWIL2 Missense_Mutation p.A513V 0.24 tolerated(0.7) benign(0.07) TCGA-BF-AAP4-01 8 22163523 22163523 C A PIWIL2 Silent p.A513A 0.21 TCGA-BF-AAP4-01 8 23702477 23702477 C T STC1 Missense_Mutation p.E184K 0.14 tolerated(0.19) benign(0.13) TCGA-BF-AAP4-01 8 25720241 25720241 G A EBF2 Missense_Mutation p.P361L 0.11 deleterious(0.02) probably_damaging(0.98) TCGA-BF-AAP4-01 8 26217704 26217704 G A PPP2R2A Nonsense_Mutation p.W132* 0.19 TCGA-BF-AAP4-01 8 27764725 27764725 G A SCARA5 Missense_Mutation p.P346S 0.14 tolerated(0.33) benign(0.328) TCGA-BF-AAP4-01 8 30032677 30032677 A G DCTN6 Silent p.L55L 0.17 TCGA-BF-AAP4-01 8 30032679 30032679 T A DCTN6 Missense_Mutation p.I56K 0.17 deleterious(0.03) benign(0.114) TCGA-BF-AAP4-01 8 30706584 30706584 C T TEX15 5'UTR 0.11 TCGA-BF-AAP4-01 8 35542264 35542264 C T UNC5D Missense_Mutation p.P306S 0.38 deleterious(0.03) probably_damaging(0.981) TCGA-BF-AAP4-01 8 35583733 35583733 G A UNC5D Missense_Mutation p.G456E 0.12 deleterious(0) benign(0.231) TCGA-BF-AAP4-01 8 36641924 36641924 C T KCNU1 5'UTR 0.12 TCGA-BF-AAP4-01 8 38826990 38826990 C T PLEKHA2 Missense_Mutation p.L323F 0.19 tolerated(0.74) benign(0.004) TCGA-BF-AAP4-01 8 39521334 39521334 C T ADAM18 Silent p.C417C 0.31 TCGA-BF-AAP4-01 8 39587462 39587462 T C ADAM18 3'UTR 0.25 TCGA-BF-AAP4-01 8 39780096 39780096 C T IDO1 Missense_Mutation p.R155C 0.18 deleterious(0) probably_damaging(0.942) TCGA-BF-AAP4-01 8 42226831 42226831 C T POLB Missense_Mutation p.P251S 0.22 tolerated(0.24) benign(0.031) TCGA-BF-AAP4-01 8 42587071 42587071 G A CHRNB3 Silent p.K207K 0.11 TCGA-BF-AAP4-01 8 42587197 42587197 C T CHRNB3 Silent p.F249F 0.32 TCGA-BF-AAP4-01 8 4494944 4494944 G A CSMD1 Silent p.F74F 0.29 TCGA-BF-AAP4-01 8 53030945 53030945 C T ST18 Missense_Mutation p.E938K 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-BF-AAP4-01 8 57224840 57224840 T C SDR16C5 Missense_Mutation p.K114R 0.14 tolerated(0.39) benign(0.181) TCGA-BF-AAP4-01 8 623439 623439 C A ERICH1 Missense_Mutation p.D305Y 0.11 tolerated(0.06) benign(0.347) TCGA-BF-AAP4-01 8 67086816 67086816 C T TRIM55 Silent p.S545S 0.14 TCGA-BF-AAP4-01 8 68007843 68007843 C T CSPP1 Missense_Mutation p.R276C 0.15 tolerated(0.24) benign(0.002) TCGA-BF-AAP4-01 8 71069269 71069269 G A NCOA2 Missense_Mutation p.S444F 0.23 tolerated(0.08) possibly_damaging(0.758) TCGA-BF-AAP4-01 8 75756291 75756291 T C PI15 Silent p.L117L 0.18 TCGA-BF-AAP4-01 8 94805512 94805512 G A TMEM67 Missense_Mutation p.M554I 0.36 tolerated(0.48) benign(0.048) TCGA-BF-AAP4-01 9 107288873 107288873 G A OR13C4 Silent p.F206F 0.23 TCGA-BF-AAP4-01 9 107367291 107367291 G A OR13C2 Silent p.F206F 0.24 TCGA-BF-AAP4-01 9 117187354 117187354 G A DFNB31 Intron 0.11 TCGA-BF-AAP4-01 9 118989718 118989718 G A PAPPA Missense_Mutation p.G707E 0.18 deleterious(0) probably_damaging(0.931) TCGA-BF-AAP4-01 9 119461188 119461188 C T TRIM32 Silent p.D389D 0.21 TCGA-BF-AAP4-01 9 120476305 120476305 C T TLR4 Silent p.I633I 0.17 TCGA-BF-AAP4-01 9 121929911 121929911 G A BRINP1 Silent p.F579F 0.12 TCGA-BF-AAP4-01 9 125273863 125273863 C T OR1J2 Silent p.F261F 0.17 TCGA-BF-AAP4-01 9 125281731 125281731 C T OR1J4 Silent p.F104F 0.25 TCGA-BF-AAP4-01 9 125288981 125288981 A T OR1N1 Missense_Mutation p.F198I 0.22 tolerated(0.14) benign(0.181) TCGA-BF-AAP4-01 9 125391046 125391046 G A OR1B1 Missense_Mutation p.L257F 0.26 tolerated(1) benign(0.015) TCGA-BF-AAP4-01 9 125562612 125562612 G A OR1K1 Missense_Mutation p.D71N 0.07 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP4-01 9 127572458 127572458 G A OLFML2A Missense_Mutation p.G576R 0.19 deleterious(0) probably_damaging(0.989) TCGA-BF-AAP4-01 9 127572459 127572459 G A OLFML2A Missense_Mutation p.G576E 0.19 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP4-01 9 130166270 130166270 C T SLC2A8 Silent p.V300V 0.09 TCGA-BF-AAP4-01 9 131115413 131115413 C T SLC27A4 Missense_Mutation p.S366F 0.37 deleterious(0.02) possibly_damaging(0.832) TCGA-BF-AAP4-01 9 131898863 131898863 C T PPP2R4 Missense_Mutation p.S225L 0.16 deleterious(0) probably_damaging(0.912) TCGA-BF-AAP4-01 9 131909780 131909780 C T PPP2R4 3'UTR 0.21 TCGA-BF-AAP4-01 9 133376556 133376556 C T ASS1 3'UTR 0.50 TCGA-BF-AAP4-01 9 135205552 135205552 A C SETX Missense_Mutation p.L478R 0.15 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 9 138714830 138714830 G A CAMSAP1 Silent p.F559F 0.24 TCGA-BF-AAP4-01 9 140355091 140355091 C T PNPLA7 Missense_Mutation p.D1314N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-BF-AAP4-01 9 140646823 140646823 C T EHMT1 Missense_Mutation p.T404I 0.60 deleterious(0.04) possibly_damaging(0.611) TCGA-BF-AAP4-01 9 14120565 14120565 G A NFIB Silent p.I373I 0.17 TCGA-BF-AAP4-01 9 2039602 2039602 G A SMARCA2 Missense_Mutation p.M164I 0.28 benign(0.193) TCGA-BF-AAP4-01 9 21141536 21141536 C T IFNW1 Missense_Mutation p.V12M 0.16 deleterious(0.04) possibly_damaging(0.694) TCGA-BF-AAP4-01 9 21141537 21141537 T C IFNW1 Silent p.L11L 0.15 TCGA-BF-AAP4-01 9 23705033 23705033 C T ELAVL2 Missense_Mutation p.D124N 0.18 tolerated(0.33) benign(0.043) TCGA-BF-AAP4-01 9 35057447 35057447 G A VCP Silent p.V747V 0.17 TCGA-BF-AAP4-01 9 35751344 35751344 A C RGP1 Missense_Mutation p.K190T 0.18 tolerated(0.14) benign(0.14) TCGA-BF-AAP4-01 9 37692685 37692685 G A FRMPD1 Missense_Mutation p.R16K 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-BF-AAP4-01 9 39086707 39086707 G A CNTNAP3 Intron 0.12 TCGA-BF-AAP4-01 9 72723207 72723207 G A MAMDC2 Missense_Mutation p.E77K 0.27 deleterious(0.03) benign(0.099) TCGA-BF-AAP4-01 9 73167936 73167936 G A TRPM3 Missense_Mutation p.S1121L 0.22 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP4-01 9 79325786 79325786 G A PRUNE2 Silent p.S468S 0.16 TCGA-BF-AAP4-01 9 8341825 8341825 G A PTPRD Silent p.I1605I 0.28 TCGA-BF-AAP4-01 9 84605983 84605983 C T SPATA31D1 Missense_Mutation p.L200F 0.11 tolerated(0.06) possibly_damaging(0.526) TCGA-BF-AAP4-01 9 90503755 90503755 C T SPATA31E1 3'UTR 0.45 TCGA-BF-AAP4-01 9 96859691 96859691 C T PTPDC1 Silent p.S279S 0.18 TCGA-BF-AAP4-01 X 10176399 10176399 C T CLCN4 Silent p.P386P 0.50 TCGA-BF-AAP4-01 X 10182042 10182042 G A CLCN4 Missense_Mutation p.G633D 0.44 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP4-01 X 101912464 101912464 C T GPRASP1 Missense_Mutation p.P1208L 0.29 deleterious(0) probably_damaging(0.991) TCGA-BF-AAP4-01 X 106845581 106845581 C T FRMPD3 Missense_Mutation p.P1471S 0.71 tolerated_low_confidence(0.07) benign(0.007) TCGA-BF-AAP4-01 X 107037455 107037455 C T NCBP2L Missense_Mutation p.S2F 0.71 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-BF-AAP4-01 X 107417843 107417843 C T COL4A6 Missense_Mutation p.G990R 0.55 probably_damaging(1) TCGA-BF-AAP4-01 X 117053571 117053571 C T KLHL13 Missense_Mutation p.M164I 0.36 deleterious(0.03) possibly_damaging(0.511) TCGA-BF-AAP4-01 X 123554626 123554626 G A TENM1 Missense_Mutation p.S1506F 0.70 deleterious(0) probably_damaging(0.971) TCGA-BF-AAP4-01 X 128901586 128901586 G A XPNPEP2 Missense_Mutation p.G583E 0.19 tolerated(0.38) benign(0.011) TCGA-BF-AAP4-01 X 129518560 129518560 G T GPR119 Missense_Mutation p.L288M 0.56 tolerated(0.13) benign(0.027) TCGA-BF-AAP4-01 X 130408753 130408753 C T IGSF1 Missense_Mutation p.E1196K 0.26 tolerated(0.38) probably_damaging(0.998) TCGA-BF-AAP4-01 X 138878491 138878491 C T ATP11C Missense_Mutation p.E386K 0.43 tolerated(0.13) benign(0.008) TCGA-BF-AAP4-01 X 140985403 140985403 G A MAGEC3 Intron 0.20 TCGA-BF-AAP4-01 X 142716743 142716743 C T SLITRK4 Missense_Mutation p.E728K 0.28 tolerated(0.28) benign(0.022) TCGA-BF-AAP4-01 X 150868515 150868515 C T PRRG3 Missense_Mutation p.R19C 0.71 deleterious(0) possibly_damaging(0.8) TCGA-BF-AAP4-01 X 151821304 151821304 G A GABRQ Missense_Mutation p.E487K 0.38 deleterious(0.01) probably_damaging(0.945) TCGA-BF-AAP4-01 X 153996903 153996903 T C DKC1 Intron 0.33 TCGA-BF-AAP4-01 X 19416380 19416380 C T MAP3K15 Missense_Mutation p.R677Q 0.30 tolerated(0.11) benign(0.031) TCGA-BF-AAP4-01 X 2951408 2951408 C T ARSH Silent p.I557I 0.45 TCGA-BF-AAP4-01 X 30237294 30237294 C T MAGEB2 Silent p.P199P 0.30 TCGA-BF-AAP4-01 X 3228098 3228098 C T MXRA5 Missense_Mutation p.E2716K 0.61 deleterious(0.04) possibly_damaging(0.811) TCGA-BF-AAP4-01 X 36091454 36091454 C T CHDC2 Missense_Mutation p.S130F 0.23 deleterious(0.05) benign(0.038) TCGA-BF-AAP4-01 X 48458059 48458059 C T WDR13 Silent p.A159A 0.26 TCGA-BF-AAP4-01 X 50350518 50350518 A T SHROOM4 Missense_Mutation p.F1208L 0.74 tolerated(0.13) benign(0.183) TCGA-BF-AAP4-01 X 67940952 67940952 C T STARD8 Nonsense_Mutation p.Q746* 0.56 TCGA-BF-AAP4-01 X 69282846 69282846 C T OTUD6A Nonsense_Mutation p.Q158* 0.27 TCGA-BF-AAP4-01 X 70321957 70321957 C T FOXO4 3'UTR 0.83 TCGA-BF-AAP4-01 X 70341517 70341517 C T MED12 Missense_Mutation p.H318Y 0.62 probably_damaging(0.986) TCGA-BF-AAP4-01 X 73045047 73045047 C T XIST RNA 0.50 TCGA-BF-AAP4-01 X 89177279 89177279 C T TGIF2LX Silent p.L65L 0.38 TCGA-BF-AAP4-01 Y 16942048 16942048 G A NLGN4Y Missense_Mutation p.R417Q 0.38 tolerated(0.17) probably_damaging(0.976) TCGA-BF-AAP6-01 10 89717699 89717699 G - PTEN Frame_Shift_Del p.E242Sfs*14 0.45 TCGA-BF-AAP6-01 11 102709851 102709851 G A MMP3 Silent p.F353F 0.56 TCGA-BF-AAP6-01 11 64883462 64883462 C T TM7SF2 Silent p.Y398Y 0.27 TCGA-BF-AAP6-01 11 66203470 66203470 G A MRPL11 3'UTR 0.29 TCGA-BF-AAP6-01 11 85597384 85597384 T C CCDC83 Missense_Mutation p.V162A 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-BF-AAP6-01 12 102038459 102038459 G A MYBPC1 Missense_Mutation p.D259N 0.28 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP6-01 12 10223999 10223999 C T CLEC1A Missense_Mutation p.R259K 0.38 tolerated(0.48) benign(0.009) TCGA-BF-AAP6-01 12 104208829 104208829 C G NT5DC3 Silent p.L93L 0.30 TCGA-BF-AAP6-01 12 105199055 105199055 C T SLC41A2 Missense_Mutation p.D533N 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-BF-AAP6-01 12 122181648 122181648 C T TMEM120B Silent p.L61L 0.15 TCGA-BF-AAP6-01 12 42860067 42860067 C T PRICKLE1 Missense_Mutation p.G235D 0.25 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP6-01 12 5021276 5021276 C A KCNA1 Silent p.P244P 0.45 TCGA-BF-AAP6-01 12 52080230 52080230 G A SCN8A Silent p.S158S 0.52 TCGA-BF-AAP6-01 14 24800239 24800239 G A ADCY4 Silent p.F305F 0.24 TCGA-BF-AAP6-01 14 36004412 36004412 G A INSM2 Silent p.A318A 0.30 TCGA-BF-AAP6-01 14 61909845 61909845 C T PRKCH Silent p.D148D 0.23 TCGA-BF-AAP6-01 14 61909846 61909846 C T PRKCH Missense_Mutation p.R149W 0.23 tolerated(0.07) possibly_damaging(0.712) TCGA-BF-AAP6-01 15 85411449 85411449 G A ALPK3 Missense_Mutation p.G1829D 0.39 deleterious(0.02) possibly_damaging(0.776) TCGA-BF-AAP6-01 16 11260374 11260374 C T CLEC16A Missense_Mutation p.S924L 0.33 tolerated(0.15) benign(0.003) TCGA-BF-AAP6-01 16 20986690 20986690 G A DNAH3 Silent p.I2708I 0.40 TCGA-BF-AAP6-01 16 25175977 25175977 G A LCMT1 Missense_Mutation p.A210T 0.07 tolerated(0.31) benign(0.006) TCGA-BF-AAP6-01 16 68404824 68404824 G A SMPD3 Missense_Mutation p.H421Y 0.33 tolerated(0.05) benign(0.392) TCGA-BF-AAP6-01 16 69971555 69971555 G A WWP2 Silent p.Q781Q 0.50 TCGA-BF-AAP6-01 17 10553716 10553716 G A MYH3 Missense_Mutation p.R170C 0.32 deleterious(0.01) possibly_damaging(0.843) TCGA-BF-AAP6-01 17 20407261 20407261 G A RP11-434D2.7 3'Flank 0.30 TCGA-BF-AAP6-01 17 56247407 56247407 C T OR4D2 Missense_Mutation p.R131C 0.10 deleterious(0) possibly_damaging(0.582) TCGA-BF-AAP6-01 17 56293561 56293561 G A MKS1 Missense_Mutation p.P102L 0.33 tolerated(0.09) benign(0.41) TCGA-BF-AAP6-01 17 77710991 77710991 G A ENPP7 Missense_Mutation p.R393Q 0.14 tolerated(0.43) benign(0.002) TCGA-BF-AAP6-01 18 60242631 60242631 G A ZCCHC2 Missense_Mutation p.R1106K 0.38 deleterious(0.03) probably_damaging(0.968) TCGA-BF-AAP6-01 19 15302326 15302326 G A NOTCH3 Silent p.I315I 0.20 TCGA-BF-AAP6-01 19 38160531 38160531 C T ZNF781 Silent p.L173L 0.44 TCGA-BF-AAP6-01 19 41597777 41597777 G A CYP2A13 Silent p.R265R 0.36 TCGA-BF-AAP6-01 19 47548546 47548546 G A NPAS1 Silent p.R470R 0.47 TCGA-BF-AAP6-01 19 6389587 6389587 G A GTF2F1 Missense_Mutation p.S65L 0.36 tolerated(0.64) probably_damaging(0.941) TCGA-BF-AAP6-01 1 103352407 103352407 C T COL11A1 Missense_Mutation p.R1605Q 0.40 unknown(0) TCGA-BF-AAP6-01 1 104116343 104116343 G A AMY2B Missense_Mutation p.R176H 0.36 deleterious(0.01) possibly_damaging(0.777) TCGA-BF-AAP6-01 1 153963240 153963240 T A RPS27 5'UTR 0.61 TCGA-BF-AAP6-01 1 160001412 160001412 C T PIGM Missense_Mutation p.D40N 0.20 deleterious(0) probably_damaging(1) TCGA-BF-AAP6-01 1 16464535 16464535 T A EPHA2 Missense_Mutation p.E375D 0.67 tolerated(0.54) benign(0) TCGA-BF-AAP6-01 1 169489864 169489864 C A F5 Missense_Mutation p.E2029D 0.72 tolerated(0.11) benign(0.043) TCGA-BF-AAP6-01 1 1849600 1849600 G A TMEM52 Silent p.S117S 0.45 TCGA-BF-AAP6-01 1 27687248 27687248 G A MAP3K6 Missense_Mutation p.R668C 0.42 deleterious(0) benign(0.096) TCGA-BF-AAP6-01 1 40775827 40775827 C T COL9A2 Missense_Mutation p.G250R 0.44 deleterious(0) probably_damaging(0.953) TCGA-BF-AAP6-01 1 44160488 44160488 G C KDM4A Missense_Mutation p.G865R 0.43 deleterious(0.01) benign(0.023) TCGA-BF-AAP6-01 1 44160489 44160489 G A KDM4A Missense_Mutation p.G865D 0.45 deleterious(0) possibly_damaging(0.531) TCGA-BF-AAP6-01 1 68906635 68906635 G T RPE65 Missense_Mutation p.H182N 0.29 deleterious(0) probably_damaging(0.936) TCGA-BF-AAP6-01 20 17587782 17587782 C T DSTN Silent p.C163C 0.04 TCGA-BF-AAP6-01 20 43851542 43851542 G A SEMG2 Silent p.K423K 0.62 TCGA-BF-AAP6-01 20 60889660 60889660 G A LAMA5 Missense_Mutation p.P2773L 0.33 benign(0.316) TCGA-BF-AAP6-01 21 32595859 32595859 G A TIAM1 Missense_Mutation p.R620C 0.36 deleterious(0) probably_damaging(1) TCGA-BF-AAP6-01 21 39755471 39755471 C T ERG Missense_Mutation p.A439T 0.45 tolerated(0.48) benign(0.001) TCGA-BF-AAP6-01 21 40186797 40186797 G T ETS2 Missense_Mutation p.G133C 0.38 tolerated(0.49) probably_damaging(0.949) TCGA-BF-AAP6-01 22 26839164 26839164 G A ASPHD2 Missense_Mutation p.G368R 0.36 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BF-AAP6-01 22 41864692 41864692 G A PHF5A 5'UTR 0.53 TCGA-BF-AAP6-01 2 130725817 130725817 G A RAB6C-AS1 RNA 0.38 TCGA-BF-AAP6-01 2 131803041 131803041 C T ARHGEF4 Intron 0.53 TCGA-BF-AAP6-01 2 160053139 160053139 G A TANC1 Silent p.K1000K 0.43 TCGA-BF-AAP6-01 2 166019183 166019183 C T SCN3A Missense_Mutation p.D284N 0.42 tolerated(1) benign(0.001) TCGA-BF-AAP6-01 2 179435028 179435028 G A TTN Silent p.F25277F 0.37 TCGA-BF-AAP6-01 2 241078604 241078604 G A OTOS Missense_Mutation p.P85S 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-BF-AAP6-01 2 33783882 33783882 G A RASGRP3 Missense_Mutation p.E617K 0.35 deleterious(0.01) benign(0.346) TCGA-BF-AAP6-01 3 108639432 108639432 C T GUCA1C Missense_Mutation p.D69N 0.37 deleterious(0) benign(0.246) TCGA-BF-AAP6-01 3 108836866 108836866 C T MORC1 Missense_Mutation p.R14H 0.38 tolerated(0.94) benign(0) TCGA-BF-AAP6-01 3 11356827 11356827 C G ATG7 Missense_Mutation p.L180V 0.05 tolerated(0.05) benign(0.098) TCGA-BF-AAP6-01 3 167031790 167031790 G A ZBBX Silent p.S463S 0.37 TCGA-BF-AAP6-01 3 167761278 167761278 C T GOLIM4 Missense_Mutation p.E136K 0.39 deleterious(0.05) probably_damaging(0.994) TCGA-BF-AAP6-01 3 38791575 38791575 G A SCN10A Missense_Mutation p.S619F 0.32 deleterious(0) probably_damaging(0.944) TCGA-BF-AAP6-01 3 39306938 39306938 G A CX3CR1 Missense_Mutation p.L387F 0.41 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BF-AAP6-01 3 49570370 49570370 C T DAG1 Missense_Mutation p.P809L 0.29 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP6-01 4 106861718 106861718 C T NPNT Nonsense_Mutation p.R260* 0.42 TCGA-BF-AAP6-01 4 176733239 176733239 C T GPM6A Intron 0.43 TCGA-BF-AAP6-01 4 55154984 55154984 G A PDGFRA Missense_Mutation p.G898D 0.05 tolerated(0.55) probably_damaging(1) TCGA-BF-AAP6-01 4 88732595 88732595 G A IBSP Missense_Mutation p.E163K 0.50 deleterious(0.04) benign(0.072) TCGA-BF-AAP6-01 5 149216431 149216431 C T PPARGC1B Missense_Mutation p.L805F 0.69 tolerated(0.06) probably_damaging(0.972) TCGA-BF-AAP6-01 5 177548534 177548534 G A N4BP3 Silent p.A389A 0.71 TCGA-BF-AAP6-01 5 45396684 45396684 G A HCN1 Silent p.I380I 0.55 TCGA-BF-AAP6-01 5 94288940 94288940 C T MCTP1 Missense_Mutation p.E322K 0.49 tolerated(0.21) benign(0.158) TCGA-BF-AAP6-01 6 32181014 32181014 C T NOTCH4 Missense_Mutation p.G779E 0.67 deleterious(0) probably_damaging(1) TCGA-BF-AAP6-01 6 42985429 42985429 C G KLHDC3 Missense_Mutation p.D109E 0.75 deleterious(0) possibly_damaging(0.851) TCGA-BF-AAP6-01 7 103038452 103038452 C T SLC26A5 Missense_Mutation p.G300R 0.54 deleterious(0) probably_damaging(0.963) TCGA-BF-AAP6-01 7 120911452 120911452 C T CPED1 Silent p.L946L 0.57 TCGA-BF-AAP6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.60 deleterious(0) probably_damaging(0.967) TCGA-BF-AAP6-01 7 143806736 143806736 G C OR2A2 Missense_Mutation p.A21P 0.08 tolerated(0.1) benign(0.044) TCGA-BF-AAP6-01 7 157175009 157175009 C T DNAJB6 Missense_Mutation p.S139L 0.31 deleterious(0.04) benign(0.32) TCGA-BF-AAP6-01 7 38431583 38431583 G A AMPH Silent p.A548A 0.23 TCGA-BF-AAP6-01 7 43921285 43921285 C T URGCP Missense_Mutation p.E59K 0.59 deleterious(0.05) probably_damaging(0.997) TCGA-BF-AAP6-01 7 73818236 73818236 G A CLIP2 3'UTR 0.28 TCGA-BF-AAP6-01 7 73818237 73818237 G A CLIP2 3'UTR 0.28 TCGA-BF-AAP6-01 9 131909723 131909723 C T PPP2R4 Missense_Mutation p.H318Y 0.35 deleterious(0.01) benign(0.007) TCGA-BF-AAP6-01 9 95610335 95610335 T C ZNF484 Missense_Mutation p.H247R 0.75 deleterious(0.02) benign(0.002) TCGA-BF-AAP6-01 X 123519638 123519638 G A TENM1 Missense_Mutation p.L1989F 0.84 deleterious(0) possibly_damaging(0.824) TCGA-BF-AAP6-01 X 78216491 78216491 C T P2RY10 Silent p.I158I 0.82 TCGA-BF-AAP7-01 10 102740614 102740614 C T SEMA4G Silent p.I501I 0.18 TCGA-BF-AAP7-01 10 123970992 123970992 C T TACC2 Missense_Mutation p.S2351F 0.20 probably_damaging(0.989) TCGA-BF-AAP7-01 10 13361165 13361165 G A SEPHS1 Missense_Mutation p.P386S 0.19 tolerated_low_confidence(0.15) benign(0.002) TCGA-BF-AAP7-01 10 133787429 133787429 T C BNIP3 Missense_Mutation p.H22R 0.13 tolerated(0.19) probably_damaging(0.96) TCGA-BF-AAP7-01 10 24832158 24832158 C T KIAA1217 Missense_Mutation p.S1320F 0.27 deleterious(0.01) benign(0.071) TCGA-BF-AAP7-01 10 26459367 26459367 G A MYO3A Silent p.R1099R 0.26 TCGA-BF-AAP7-01 10 30336469 30336469 C T KIAA1462 Silent p.S91S 0.27 TCGA-BF-AAP7-01 10 50531180 50531180 G A C10orf71 Missense_Mutation p.R197K 0.20 tolerated(0.37) probably_damaging(0.998) TCGA-BF-AAP7-01 10 50574211 50574211 C T DRGX Missense_Mutation p.E253K 0.27 tolerated_low_confidence(0.34) benign(0) TCGA-BF-AAP7-01 10 52390466 52390466 T A RP11-50E11.3 RNA 0.19 TCGA-BF-AAP7-01 10 69676231 69676231 C T SIRT1 Missense_Mutation p.P709S 0.24 deleterious_low_confidence(0.03) benign(0.004) TCGA-BF-AAP7-01 10 69676232 69676232 C T SIRT1 Missense_Mutation p.P709L 0.24 deleterious_low_confidence(0.04) benign(0.002) TCGA-BF-AAP7-01 10 75550744 75550744 C T ZSWIM8 Missense_Mutation p.S318F 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BF-AAP7-01 10 86012693 86012693 C T RGR Missense_Mutation p.L151F 0.20 deleterious(0) probably_damaging(0.995) TCGA-BF-AAP7-01 10 88227252 88227252 G A WAPAL Silent p.L718L 0.20 TCGA-BF-AAP7-01 10 89653842 89653842 G A PTEN Missense_Mutation p.R47K 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-BF-AAP7-01 10 96454787 96454787 G A CYP2C18 Missense_Mutation p.E199K 0.24 tolerated(0.62) benign(0.008) TCGA-BF-AAP7-01 11 101343014 101343014 C A TRPC6 Nonsense_Mutation p.E687* 0.19 TCGA-BF-AAP7-01 11 103070132 103070132 A T DYNC2H1 Missense_Mutation p.H2672L 0.14 benign(0.043) TCGA-BF-AAP7-01 11 10603433 10603433 C T MRVI1 Missense_Mutation p.E781K 0.13 deleterious(0.01) benign(0.113) TCGA-BF-AAP7-01 11 116728861 116728861 G A SIK3 Missense_Mutation p.P1001L 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP7-01 11 117094845 117094845 C T PCSK7 Missense_Mutation p.D335N 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 11 117335667 117335667 G A DSCAML1 Silent p.L1146L 0.13 TCGA-BF-AAP7-01 11 118635929 118635929 G A DDX6 Missense_Mutation p.L212F 0.15 deleterious(0.03) benign(0.158) TCGA-BF-AAP7-01 11 123908863 123908863 G A OR10G7 Silent p.F282F 0.24 TCGA-BF-AAP7-01 11 124180084 124180084 G A OR8D1 Silent p.H193H 0.11 TCGA-BF-AAP7-01 11 124910602 124910602 C T CCDC15 Silent p.L951L 0.18 TCGA-BF-AAP7-01 11 128680801 128680801 C T FLI1 Missense_Mutation p.P426L 0.19 deleterious(0) benign(0.081) TCGA-BF-AAP7-01 11 128855970 128855970 G A ARHGAP32 Missense_Mutation p.S471L 0.24 deleterious(0) possibly_damaging(0.872) TCGA-BF-AAP7-01 11 22360100 22360100 G A SLC17A6 Silent p.R7R 0.11 TCGA-BF-AAP7-01 11 2441632 2441632 C T TRPM5 Missense_Mutation p.D157N 0.12 tolerated(0.12) benign(0.009) TCGA-BF-AAP7-01 11 35463064 35463064 C T PAMR1 Missense_Mutation p.G350E 0.19 deleterious(0) possibly_damaging(0.844) TCGA-BF-AAP7-01 11 57258813 57258813 G A SLC43A1 Silent p.F359F 0.29 TCGA-BF-AAP7-01 11 57798886 57798886 G A OR6Q1 Silent p.L154L 0.19 TCGA-BF-AAP7-01 11 58034642 58034642 G A OR10W1 Missense_Mutation p.S230F 0.24 deleterious(0) probably_damaging(0.951) TCGA-BF-AAP7-01 11 61070104 61070104 G A DDB1 Missense_Mutation p.S1021F 0.17 tolerated(0.25) possibly_damaging(0.562) TCGA-BF-AAP7-01 11 61643879 61643879 G A FADS3 Silent p.I344I 0.17 TCGA-BF-AAP7-01 11 62372625 62372625 G A EML3 Missense_Mutation p.P648S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 11 62372626 62372626 G A EML3 Silent p.H647H 0.19 TCGA-BF-AAP7-01 11 64121251 64121251 C T CCDC88B Missense_Mutation p.R1300C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 11 6588932 6588932 G A DNHD1 Missense_Mutation p.G4065S 0.18 probably_damaging(1) TCGA-BF-AAP7-01 11 66474990 66474990 C T SPTBN2 Missense_Mutation p.M550I 0.20 tolerated(0.63) possibly_damaging(0.629) TCGA-BF-AAP7-01 11 68512456 68512456 T G MTL5 Intron 0.14 TCGA-BF-AAP7-01 11 69462781 69462781 T C CCND1 Silent p.N198N 0.10 TCGA-BF-AAP7-01 11 722430 722430 C T EPS8L2 Silent p.I363I 0.15 TCGA-BF-AAP7-01 11 73067238 73067238 C T ARHGEF17 Missense_Mutation p.P1228S 0.33 tolerated(0.2) possibly_damaging(0.729) TCGA-BF-AAP7-01 11 74415556 74415556 G A CHRDL2 Silent p.I242I 0.22 TCGA-BF-AAP7-01 11 75852213 75852213 C T UVRAG Missense_Mutation p.P619L 0.22 tolerated_low_confidence(0.11) benign(0.075) TCGA-BF-AAP7-01 11 76372214 76372214 C T LRRC32 Silent p.L141L 0.22 TCGA-BF-AAP7-01 11 77632420 77632420 C T INTS4 Missense_Mutation p.R577Q 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-BF-AAP7-01 11 78467991 78467991 G A TENM4 Missense_Mutation p.S872F 0.23 deleterious(0.01) possibly_damaging(0.729) TCGA-BF-AAP7-01 12 104033936 104033936 C T STAB2 Silent p.F314F 0.22 TCGA-BF-AAP7-01 12 120114443 120114443 C T PRKAB1 Nonsense_Mutation p.Q212* 0.18 TCGA-BF-AAP7-01 12 123805038 123805038 G A SBNO1 Missense_Mutation p.P870S 0.21 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP7-01 12 124421766 124421766 G A CCDC92 Missense_Mutation p.P279S 0.15 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-BF-AAP7-01 12 124421767 124421767 G A CCDC92 Silent p.S278S 0.15 TCGA-BF-AAP7-01 12 132403762 132403762 G A ULK1 Silent p.E839E 0.14 TCGA-BF-AAP7-01 12 25232684 25232684 G A LRMP Silent p.T77T 0.16 TCGA-BF-AAP7-01 12 33031904 33031904 C T PKP2 Missense_Mutation p.D96N 0.29 deleterious(0.04) benign(0.111) TCGA-BF-AAP7-01 12 40110622 40110622 C T C12orf40 Silent p.F492F 0.21 TCGA-BF-AAP7-01 12 41463816 41463816 C T CNTN1 Silent p.I1012I 0.33 TCGA-BF-AAP7-01 12 416920 416920 G A KDM5A Silent p.F1210F 0.21 TCGA-BF-AAP7-01 12 46244314 46244314 G A ARID2 Missense_Mutation p.G803D 0.17 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BF-AAP7-01 12 46287305 46287308 CCTT G ARID2 In_Frame_Del p.N1750_L1751delinsK 0.24 TCGA-BF-AAP7-01 12 46756930 46756930 T C SLC38A2 Splice_Site p.X352_splice 0.10 TCGA-BF-AAP7-01 12 48739243 48739243 G A ZNF641 Silent p.I111I 0.14 TCGA-BF-AAP7-01 12 48920071 48920071 C T OR8S1 Silent p.T219T 0.12 TCGA-BF-AAP7-01 12 4919874 4919874 G A KCNA6 Missense_Mutation p.E223K 0.23 tolerated(0.28) benign(0.169) TCGA-BF-AAP7-01 12 51208096 51208096 G A ATF1 Missense_Mutation p.R182Q 0.23 tolerated(0.05) benign(0.008) TCGA-BF-AAP7-01 12 53089574 53089574 C T KRT77 Silent p.L299L 0.19 TCGA-BF-AAP7-01 12 54764812 54764812 C T ZNF385A Missense_Mutation p.G245R 0.20 deleterious(0) probably_damaging(0.951) TCGA-BF-AAP7-01 12 54764813 54764813 C T ZNF385A Silent p.L244L 0.20 TCGA-BF-AAP7-01 12 56995071 56995071 G A BAZ2A Missense_Mutation p.P1398L 0.16 tolerated(0.81) benign(0.001) TCGA-BF-AAP7-01 12 6497593 6497593 C T LTBR Missense_Mutation p.P233S 0.21 tolerated(0.09) benign(0.05) TCGA-BF-AAP7-01 12 66308864 66308864 C T HMGA2 Intron 0.13 TCGA-BF-AAP7-01 12 6884503 6884503 C T LAG3 Silent p.C282C 0.14 TCGA-BF-AAP7-01 12 7527454 7527454 G A CD163L1 Missense_Mutation p.P1023S 0.31 tolerated(1) benign(0.223) TCGA-BF-AAP7-01 12 7894032 7894032 C T CLEC4C Missense_Mutation p.G74R 0.33 deleterious(0.03) benign(0.035) TCGA-BF-AAP7-01 12 88487599 88487599 G A CEP290 Missense_Mutation p.S1086L 0.15 possibly_damaging(0.726) TCGA-BF-AAP7-01 12 99166825 99166825 C T ANKS1B Missense_Mutation p.D1167N 0.10 deleterious(0.03) possibly_damaging(0.652) TCGA-BF-AAP7-01 13 108863629 108863629 G A LIG4 5'UTR 0.17 TCGA-BF-AAP7-01 13 110828797 110828797 C T COL4A1 Missense_Mutation p.G1011E 0.18 probably_damaging(1) TCGA-BF-AAP7-01 13 111545526 111545526 G A ANKRD10 Silent p.L180L 0.11 TCGA-BF-AAP7-01 13 21732153 21732153 C T SKA3 Missense_Mutation p.D343N 0.20 deleterious(0.05) benign(0.128) TCGA-BF-AAP7-01 13 21732154 21732154 T C SKA3 Silent p.T342T 0.20 TCGA-BF-AAP7-01 13 25671674 25671674 T C PABPC3 Silent p.S446S 0.17 TCGA-BF-AAP7-01 13 27679946 27679946 G A USP12 Missense_Mutation p.H89Y 0.22 tolerated(1) benign(0.016) TCGA-BF-AAP7-01 13 31233342 31233342 C A USPL1 Missense_Mutation p.T1043K 0.14 deleterious(0.01) possibly_damaging(0.754) TCGA-BF-AAP7-01 13 46544059 46544059 G A ZC3H13 Missense_Mutation p.R874C 0.23 unknown(0) TCGA-BF-AAP7-01 13 50204770 50204770 G A ARL11 Missense_Mutation p.D63N 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 13 51943083 51943083 G A INTS6 Missense_Mutation p.P823L 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-BF-AAP7-01 13 52439511 52439511 C T CCDC70 5'UTR 0.27 TCGA-BF-AAP7-01 13 53216642 53216642 G A HNRNPA1L2 Silent p.A5A 0.20 TCGA-BF-AAP7-01 13 67801764 67801764 G A PCDH9 Missense_Mutation p.S270F 0.24 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP7-01 13 92345697 92345697 C T GPC5 Silent p.I194I 0.17 TCGA-BF-AAP7-01 14 102028607 102028607 C T DIO3 Silent p.F258F 0.28 TCGA-BF-AAP7-01 14 106173645 106173645 C T IGHA1 Missense_Mutation p.G308R 0.06 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 14 107131211 107131211 C T IGHV3-66 Missense_Mutation p.R57H 0.24 deleterious_low_confidence(0.05) benign(0.35) TCGA-BF-AAP7-01 14 20344669 20344669 G A OR4K2 Missense_Mutation p.M81I 0.18 deleterious(0.01) possibly_damaging(0.593) TCGA-BF-AAP7-01 14 20389138 20389138 G C OR4K5 Missense_Mutation p.A125P 0.22 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 14 20482989 20482989 C T OR4K14 Missense_Mutation p.D122N 0.10 deleterious(0) possibly_damaging(0.776) TCGA-BF-AAP7-01 14 20779663 20779663 A C CCNB1IP1 3'UTR 0.23 TCGA-BF-AAP7-01 14 23893268 23893268 C T MYH7 Missense_Mutation p.E924K 0.17 deleterious(0.02) possibly_damaging(0.532) TCGA-BF-AAP7-01 14 24586250 24586250 C T DCAF11 Missense_Mutation p.P94S 0.22 tolerated(0.21) benign(0.164) TCGA-BF-AAP7-01 14 24586251 24586251 C T DCAF11 Missense_Mutation p.P94L 0.20 tolerated(0.13) benign(0.164) TCGA-BF-AAP7-01 14 34029364 34029364 G A NPAS3 Missense_Mutation p.G169E 0.23 deleterious(0) probably_damaging(0.982) TCGA-BF-AAP7-01 14 47530624 47530624 A G MDGA2 Silent p.S451S 0.19 TCGA-BF-AAP7-01 14 67665035 67665035 C T FAM71D Nonsense_Mutation p.Q53* 0.13 TCGA-BF-AAP7-01 14 69806244 69806244 G A GALNT16 Silent p.R365R 0.25 TCGA-BF-AAP7-01 14 70517766 70517766 G A SLC8A3 Missense_Mutation p.S697F 0.10 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP7-01 14 73719433 73719433 G A PAPLN Silent p.R321R 0.23 TCGA-BF-AAP7-01 14 81744717 81744717 T C STON2 Missense_Mutation p.N313S 0.19 deleterious(0.05) probably_damaging(0.998) TCGA-BF-AAP7-01 14 90650876 90650876 G A KCNK13 Silent p.E252E 0.24 TCGA-BF-AAP7-01 14 91755495 91755495 G A CCDC88C Silent p.S1465S 0.24 TCGA-BF-AAP7-01 14 92189435 92189435 C T CATSPERB Missense_Mutation p.M89I 0.24 tolerated(1) benign(0) TCGA-BF-AAP7-01 14 93709326 93709326 T C BTBD7 Missense_Mutation p.S898G 0.14 tolerated_low_confidence(0.58) benign(0.026) TCGA-BF-AAP7-01 14 94725700 94725700 G A PPP4R4 Silent p.L707L 0.16 TCGA-BF-AAP7-01 14 96135943 96135943 G A TCL6 RNA 0.24 TCGA-BF-AAP7-01 15 22369154 22369154 C T OR4M2 Silent p.F193F 0.06 TCGA-BF-AAP7-01 15 25490546 25490546 C T SNORD115-40 3'Flank 0.19 TCGA-BF-AAP7-01 15 26793000 26793000 G A GABRB3 Silent p.I454I 0.16 TCGA-BF-AAP7-01 15 26806098 26806098 G A GABRB3 Missense_Mutation p.S354L 0.16 tolerated(0.3) benign(0.158) TCGA-BF-AAP7-01 15 32450802 32450802 C T CHRNA7 Missense_Mutation p.S292F 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 15 37184471 37184471 G A MEIS2 Missense_Mutation p.T446I 0.21 tolerated_low_confidence(0.23) benign(0.01) TCGA-BF-AAP7-01 15 40914432 40914432 C T CASC5 Missense_Mutation p.P683L 0.20 tolerated(0.61) benign(0.013) TCGA-BF-AAP7-01 15 42115345 42115345 C T MAPKBP1 Missense_Mutation p.P1181S 0.21 tolerated(0.13) benign(0.004) TCGA-BF-AAP7-01 15 49292055 49292055 C T SECISBP2L Missense_Mutation p.G793E 0.21 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 15 51773642 51773642 G A DMXL2 Silent p.T1887T 0.21 TCGA-BF-AAP7-01 15 55976048 55976048 G A PRTG Missense_Mutation p.S160F 0.15 deleterious(0) probably_damaging(0.932) TCGA-BF-AAP7-01 15 64967090 64967090 G A ZNF609 Silent p.A679A 0.22 TCGA-BF-AAP7-01 15 65345306 65345306 A T SLC51B Missense_Mutation p.K64I 0.09 deleterious(0) benign(0.173) TCGA-BF-AAP7-01 15 69328222 69328222 C T NOX5 Silent p.L378L 0.20 TCGA-BF-AAP7-01 15 75653948 75653948 G A MAN2C1 Silent p.F405F 0.10 TCGA-BF-AAP7-01 15 83331464 83331464 G A AP3B2 Nonsense_Mutation p.Q920* 0.38 TCGA-BF-AAP7-01 15 90446459 90446459 C T C15orf38-AP3S2 Missense_Mutation p.D221N 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP7-01 16 10626924 10626924 G A EMP2 Silent p.S114S 0.15 TCGA-BF-AAP7-01 16 10996560 10996560 G A CIITA Missense_Mutation p.G225E 0.15 deleterious(0.01) probably_damaging(0.963) TCGA-BF-AAP7-01 16 12060179 12060179 G A TNFRSF17 Silent p.K86K 0.13 TCGA-BF-AAP7-01 16 19547494 19547494 T G CCP110 Missense_Mutation p.F168C 0.18 tolerated(0.12) possibly_damaging(0.54) TCGA-BF-AAP7-01 16 20370535 20370535 C T PDILT 3'UTR 0.22 TCGA-BF-AAP7-01 16 20570625 20570625 G A ACSM2B Missense_Mutation p.R108C 0.33 deleterious(0.02) benign(0.188) TCGA-BF-AAP7-01 16 20673121 20673121 G A ACSM1 Silent p.F329F 0.22 TCGA-BF-AAP7-01 16 21036005 21036005 C T DNAH3 Missense_Mutation p.M1853I 0.15 deleterious(0) possibly_damaging(0.715) TCGA-BF-AAP7-01 16 2134435 2134435 G A TSC2 Silent p.K1404K 0.25 TCGA-BF-AAP7-01 16 22122238 22122238 G A VWA3A Silent p.K204K 0.21 TCGA-BF-AAP7-01 16 30500472 30500472 G A ITGAL Missense_Mutation p.S359N 0.19 deleterious(0.05) benign(0.005) TCGA-BF-AAP7-01 16 30976251 30976251 T A SETD1A Silent p.P396P 0.15 TCGA-BF-AAP7-01 16 30976760 30976760 C T SETD1A Missense_Mutation p.P566L 0.22 benign(0.206) TCGA-BF-AAP7-01 16 3644589 3644589 C T SLX4 Silent p.G675G 0.14 TCGA-BF-AAP7-01 16 3644590 3644590 C T SLX4 Missense_Mutation p.G675E 0.14 deleterious(0.02) probably_damaging(0.962) TCGA-BF-AAP7-01 16 396393 396393 C T AXIN1 Silent p.T211T 0.29 TCGA-BF-AAP7-01 16 57713155 57713155 G A GPR97 Missense_Mutation p.G187R 0.14 deleterious(0) probably_damaging(0.964) TCGA-BF-AAP7-01 16 58577803 58577803 G A CNOT1 Missense_Mutation p.P1381L 0.12 tolerated(0.05) benign(0.005) TCGA-BF-AAP7-01 16 58619396 58619396 G A CNOT1 Missense_Mutation p.R218C 0.29 tolerated(0.11) possibly_damaging(0.719) TCGA-BF-AAP7-01 16 66945846 66945846 G A CDH16 Silent p.F582F 0.20 TCGA-BF-AAP7-01 16 67286479 67286479 C T SLC9A5 Silent p.V74V 0.27 TCGA-BF-AAP7-01 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.18 tolerated(1) benign(0.004) TCGA-BF-AAP7-01 16 77465347 77465347 G A ADAMTS18 Missense_Mutation p.P114S 0.21 tolerated(0.21) benign(0.048) TCGA-BF-AAP7-01 16 77918599 77918599 G A VAT1L Missense_Mutation p.G326D 0.15 tolerated(0.3) benign(0.009) TCGA-BF-AAP7-01 16 81819620 81819620 C T PLCG2 Missense_Mutation p.S9F 0.14 deleterious(0.04) benign(0.021) TCGA-BF-AAP7-01 16 81819621 81819621 C T PLCG2 Silent p.S9S 0.14 TCGA-BF-AAP7-01 16 89199596 89199596 C T ACSF3 Missense_Mutation p.S431F 0.15 deleterious(0) probably_damaging(0.948) TCGA-BF-AAP7-01 16 89603197 89603197 C T SPG7 Intron 0.28 TCGA-BF-AAP7-01 16 8994477 8994477 G A USP7 Missense_Mutation p.P740L 0.14 tolerated(0.1) benign(0.17) TCGA-BF-AAP7-01 17 10348633 10348633 G A MYH4 Missense_Mutation p.S1739F 0.20 deleterious(0.02) benign(0.427) TCGA-BF-AAP7-01 17 1639392 1639392 C T WDR81 Silent p.S1795S 0.20 TCGA-BF-AAP7-01 17 16526384 16526384 G A ZNF624 Missense_Mutation p.H606Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-BF-AAP7-01 17 16664963 16664963 A T CCDC144A Missense_Mutation p.K1199N 0.12 deleterious(0) benign(0.084) TCGA-BF-AAP7-01 17 25753013 25753013 C T TBC1D3P5 RNA 0.23 TCGA-BF-AAP7-01 17 27309057 27309057 C A SEZ6 Missense_Mutation p.G19V 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-BF-AAP7-01 17 27425192 27425192 G A MYO18A Silent p.S1307S 0.18 TCGA-BF-AAP7-01 17 28593929 28593929 G A BLMH Missense_Mutation p.S397L 0.20 deleterious(0) probably_damaging(0.921) TCGA-BF-AAP7-01 17 3030807 3030807 G A OR1G1 Silent p.F13F 0.17 TCGA-BF-AAP7-01 17 34304569 34304569 C T CCL16 3'UTR 0.10 TCGA-BF-AAP7-01 17 3591970 3591970 G A P2RX5 Silent p.S279S 0.19 TCGA-BF-AAP7-01 17 3628508 3628508 A G GSG2 Missense_Mutation p.N427D 0.22 tolerated(0.13) benign(0.004) TCGA-BF-AAP7-01 17 3651275 3651275 C T ITGAE Missense_Mutation p.G699D 0.25 tolerated(0.43) benign(0.052) TCGA-BF-AAP7-01 17 3664367 3664367 G A ITGAE Silent p.L180L 0.19 TCGA-BF-AAP7-01 17 37818531 37818531 C T STARD3 Silent p.I389I 0.19 TCGA-BF-AAP7-01 17 40149190 40149190 G A DNAJC7 Silent p.F78F 0.21 TCGA-BF-AAP7-01 17 40716584 40716584 C T COASY Missense_Mutation p.R375W 0.22 deleterious(0.03) possibly_damaging(0.885) TCGA-BF-AAP7-01 17 42170134 42170134 G A HDAC5 Nonsense_Mutation p.Q229* 0.08 TCGA-BF-AAP7-01 17 46607912 46607912 G A HOXB1 Nonsense_Mutation p.Q119* 0.11 TCGA-BF-AAP7-01 17 46799727 46799727 C T PRAC1 Missense_Mutation p.G10R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-BF-AAP7-01 17 4804162 4804162 G A CHRNE Silent p.L281L 0.14 TCGA-BF-AAP7-01 17 4841882 4841882 C T SLC25A11 Silent p.Q157Q 0.29 TCGA-BF-AAP7-01 17 56435516 56435516 C T RNF43 Missense_Mutation p.E541K 0.16 tolerated(0.38) benign(0.007) TCGA-BF-AAP7-01 17 59469534 59469534 G A BCAS3 3'UTR 0.26 TCGA-BF-AAP7-01 17 6703463 6703463 C T TEKT1 Silent p.E380E 0.14 TCGA-BF-AAP7-01 17 6930094 6930094 C T BCL6B Silent p.S375S 0.17 TCGA-BF-AAP7-01 17 7256691 7256691 G A KCTD11 Missense_Mutation p.A144T 0.21 tolerated(0.39) benign(0.002) TCGA-BF-AAP7-01 17 73231716 73231716 C G NUP85 Missense_Mutation p.S638C 0.09 tolerated(0.05) benign(0.372) TCGA-BF-AAP7-01 17 7329091 7329091 C T C17orf74 Silent p.L28L 0.19 TCGA-BF-AAP7-01 17 73491474 73491474 C T KIAA0195 Silent p.S946S 0.27 TCGA-BF-AAP7-01 17 74287791 74287791 G A QRICH2 Missense_Mutation p.P840L 0.18 tolerated(0.06) benign(0.089) TCGA-BF-AAP7-01 17 7640516 7640516 C T DNAH2 Silent p.I370I 0.13 TCGA-BF-AAP7-01 17 76455239 76455239 G A DNAH17 Silent p.S3221S 0.25 TCGA-BF-AAP7-01 17 78058695 78058695 G A CCDC40 Missense_Mutation p.E715K 0.30 deleterious(0.01) benign(0.435) TCGA-BF-AAP7-01 17 80047137 80047137 C T FASN Missense_Mutation p.E697K 0.19 tolerated(0.11) benign(0.008) TCGA-BF-AAP7-01 17 80047138 80047138 C T FASN Silent p.Q696Q 0.19 TCGA-BF-AAP7-01 17 80048832 80048832 G A FASN Nonsense_Mutation p.Q536* 0.12 TCGA-BF-AAP7-01 17 8108217 8108217 G A AURKB Missense_Mutation p.P336L 0.15 deleterious(0.04) benign(0.031) TCGA-BF-AAP7-01 17 8158378 8158378 C T PFAS Silent p.I104I 0.14 TCGA-BF-AAP7-01 17 9862566 9862566 C T GAS7 Missense_Mutation p.G160R 0.20 deleterious(0.03) possibly_damaging(0.755) TCGA-BF-AAP7-01 18 12429403 12429403 G A SLMO1 3'UTR 0.09 TCGA-BF-AAP7-01 18 31323244 31323244 C T ASXL3 Silent p.V1144V 0.19 TCGA-BF-AAP7-01 18 47310181 47310181 G A ACAA2 3'UTR 0.14 TCGA-BF-AAP7-01 18 48190551 48190551 G A MAPK4 Missense_Mutation p.D75N 0.20 deleterious(0.03) possibly_damaging(0.458) TCGA-BF-AAP7-01 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.18 deleterious(0.01) possibly_damaging(0.663) TCGA-BF-AAP7-01 18 67696020 67696020 T A RTTN Missense_Mutation p.K1921N 0.19 deleterious(0) possibly_damaging(0.718) TCGA-BF-AAP7-01 18 6898599 6898599 C T ARHGAP28 Intron 0.21 TCGA-BF-AAP7-01 19 11032498 11032498 G A CARM1 3'UTR 0.18 TCGA-BF-AAP7-01 19 11032499 11032499 G A CARM1 3'UTR 0.19 TCGA-BF-AAP7-01 19 11134252 11134252 G A SMARCA4 Missense_Mutation p.R973Q 0.12 probably_damaging(0.992) TCGA-BF-AAP7-01 19 11917706 11917706 C T ZNF491 Missense_Mutation p.S313L 0.25 deleterious(0.05) benign(0.316) TCGA-BF-AAP7-01 19 13443692 13443692 G A CACNA1A Missense_Mutation p.P416S 0.24 probably_damaging(0.932) TCGA-BF-AAP7-01 19 14521925 14521925 G A DDX39A Silent p.N163N 0.16 TCGA-BF-AAP7-01 19 15586526 15586526 G C PGLYRP2 Missense_Mutation p.R319G 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 19 17301964 17301964 T G MYO9B Missense_Mutation p.V916G 0.17 tolerated(0.67) benign(0.02) TCGA-BF-AAP7-01 19 17387415 17387415 C T BABAM1 Silent p.S227S 0.25 TCGA-BF-AAP7-01 19 18569020 18569020 G A ELL Silent p.L288L 0.20 TCGA-BF-AAP7-01 19 19257617 19257617 C T MEF2B Silent p.P203P 0.26 TCGA-BF-AAP7-01 19 22574587 22574587 G A ZNF98 Missense_Mutation p.H484Y 0.11 deleterious(0.02) probably_damaging(0.943) TCGA-BF-AAP7-01 19 2408447 2408447 C T TMPRSS9 Silent p.I278I 0.16 TCGA-BF-AAP7-01 19 33321580 33321580 G A SLC7A9 Silent p.T470T 0.12 TCGA-BF-AAP7-01 19 35719488 35719488 C T FAM187B Silent p.Q32Q 0.23 TCGA-BF-AAP7-01 19 36321976 36321976 C A NPHS1 Nonsense_Mutation p.E1154* 0.15 TCGA-BF-AAP7-01 19 36674287 36674287 G A ZNF565 Missense_Mutation p.P194L 0.19 tolerated(0.09) probably_damaging(0.912) TCGA-BF-AAP7-01 19 36940286 36940286 C T ZNF566 Missense_Mutation p.E285K 0.17 tolerated(0.15) benign(0.23) TCGA-BF-AAP7-01 19 37880899 37880899 C T ZNF527 3'UTR 0.19 TCGA-BF-AAP7-01 19 38976452 38976452 C T RYR1 Silent p.L1719L 0.23 TCGA-BF-AAP7-01 19 40902881 40902881 G A PRX Missense_Mutation p.L460F 0.14 tolerated(0.2) possibly_damaging(0.765) TCGA-BF-AAP7-01 19 40902882 40902882 G A PRX Silent p.A459A 0.14 TCGA-BF-AAP7-01 19 41450745 41450745 C T AC092071.1 5'Flank 0.11 TCGA-BF-AAP7-01 19 43411287 43411287 A G PSG6 Missense_Mutation p.Y343H 0.19 tolerated(0.22) probably_damaging(0.967) TCGA-BF-AAP7-01 19 43698656 43698656 G A PSG4 Missense_Mutation p.P360L 0.14 deleterious(0.01) probably_damaging(1) TCGA-BF-AAP7-01 19 43698657 43698657 G A PSG4 Missense_Mutation p.P360S 0.14 tolerated(0.1) probably_damaging(1) TCGA-BF-AAP7-01 19 43766015 43766015 G A PSG9 Missense_Mutation p.L236F 0.19 deleterious(0) probably_damaging(0.918) TCGA-BF-AAP7-01 19 45719452 45719452 C T EXOC3L2 Missense_Mutation p.E274K 0.16 deleterious(0.04) benign(0.077) TCGA-BF-AAP7-01 19 45719453 45719453 C T EXOC3L2 Splice_Site p.X274_splice 0.16 TCGA-BF-AAP7-01 19 46375424 46375424 G A FOXA3 Missense_Mutation p.G54E 0.21 deleterious(0.02) unknown(0) TCGA-BF-AAP7-01 19 46388356 46388356 G A IRF2BP1 Missense_Mutation p.P226L 0.24 deleterious(0) possibly_damaging(0.908) TCGA-BF-AAP7-01 19 46887075 46887075 G A PPP5C Silent p.Q246Q 0.14 TCGA-BF-AAP7-01 19 49385450 49385450 G A TULP2 Missense_Mutation p.S429L 0.16 deleterious(0.02) benign(0.411) TCGA-BF-AAP7-01 19 52793490 52793490 T C ZNF766 Missense_Mutation p.L149P 0.27 tolerated(0.31) possibly_damaging(0.878) TCGA-BF-AAP7-01 19 54745624 54745624 C T LILRA6 Silent p.Q162Q 0.15 TCGA-BF-AAP7-01 19 54784340 54784340 G A LILRB2 Silent p.I4I 0.28 TCGA-BF-AAP7-01 19 55439140 55439140 G A NLRP7 Silent p.L938L 0.17 TCGA-BF-AAP7-01 19 55494510 55494510 C T NLRP2 Silent p.L482L 0.11 TCGA-BF-AAP7-01 19 56421954 56421954 G A NLRP13 Missense_Mutation p.P753S 0.20 tolerated(0.07) possibly_damaging(0.685) TCGA-BF-AAP7-01 19 57640605 57640605 A C USP29 Missense_Mutation p.N188H 0.17 deleterious(0.02) possibly_damaging(0.854) TCGA-BF-AAP7-01 19 58084011 58084011 G A ZNF416 Silent p.L421L 0.16 TCGA-BF-AAP7-01 19 58988607 58988607 C T ZNF446 Missense_Mutation p.P8S 0.15 tolerated(0.33) benign(0.171) TCGA-BF-AAP7-01 19 58988608 58988608 C T ZNF446 Missense_Mutation p.P8L 0.15 tolerated(0.14) benign(0.062) TCGA-BF-AAP7-01 19 6750589 6750589 C T TRIP10 Silent p.F478F 0.22 TCGA-BF-AAP7-01 19 7125350 7125350 G A INSR Missense_Mutation p.R1068W 0.16 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP7-01 19 7565843 7565843 G A C19orf45 Silent p.R45R 0.27 TCGA-BF-AAP7-01 19 7755403 7755403 G A FCER2 Silent p.F170F 0.12 TCGA-BF-AAP7-01 19 8808698 8808698 G A ACTL9 Silent p.I118I 0.08 TCGA-BF-AAP7-01 19 9050062 9050062 C T MUC16 Missense_Mutation p.M10523I 0.19 benign(0.003) TCGA-BF-AAP7-01 19 9071568 9071568 G A MUC16 Missense_Mutation p.S5293F 0.15 unknown(0) TCGA-BF-AAP7-01 19 9084252 9084252 C T MUC16 Silent p.K2521K 0.24 TCGA-BF-AAP7-01 19 9084403 9084403 G A MUC16 Missense_Mutation p.P2471L 0.26 unknown(0) TCGA-BF-AAP7-01 19 9677314 9677314 G A ZNF121 Missense_Mutation p.L159F 0.27 tolerated(0.11) possibly_damaging(0.465) TCGA-BF-AAP7-01 1 10364155 10364155 C T KIF1B Intron 0.15 TCGA-BF-AAP7-01 1 112298355 112298355 G A DDX20 5'UTR 0.14 TCGA-BF-AAP7-01 1 11735756 11735756 C T MAD2L2 Missense_Mutation p.E154K 0.20 deleterious(0.02) possibly_damaging(0.536) TCGA-BF-AAP7-01 1 12726184 12726184 T C AADACL4 Missense_Mutation p.I221T 0.18 deleterious(0) probably_damaging(0.983) TCGA-BF-AAP7-01 1 144857021 144857021 G A PDE4DIP Missense_Mutation p.P2155L 0.10 tolerated(0.13) benign(0.287) TCGA-BF-AAP7-01 1 151315634 151315634 G A RFX5 Silent p.A293A 0.23 TCGA-BF-AAP7-01 1 151742733 151742733 G A OAZ3 Missense_Mutation p.G144S 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-BF-AAP7-01 1 154479765 154479765 G A TDRD10 Silent p.K17K 0.43 TCGA-BF-AAP7-01 1 156821118 156821118 T C INSRR Missense_Mutation p.N398S 0.25 tolerated(0.41) benign(0.081) TCGA-BF-AAP7-01 1 157772169 157772169 C T FCRL1 Missense_Mutation p.R202K 0.35 tolerated(0.17) benign(0.2) TCGA-BF-AAP7-01 1 158517788 158517788 G A OR6Y1 Silent p.F36F 0.38 TCGA-BF-AAP7-01 1 161693296 161693296 C T FCRLB Silent p.G64G 0.14 TCGA-BF-AAP7-01 1 16247418 16247418 A T SPEN Missense_Mutation p.E563D 0.26 probably_damaging(0.996) TCGA-BF-AAP7-01 1 162557282 162557282 C T UAP1 Silent p.N284N 0.33 TCGA-BF-AAP7-01 1 16458766 16458766 C T EPHA2 Silent p.E706E 0.19 TCGA-BF-AAP7-01 1 167097549 167097549 A G DUSP27 Missense_Mutation p.N1061D 0.24 tolerated(0.42) benign(0) TCGA-BF-AAP7-01 1 173921254 173921254 A G RC3H1 Missense_Mutation p.V798A 0.09 tolerated(0.71) benign(0) TCGA-BF-AAP7-01 1 176993765 176993765 G A ASTN1 Silent p.L408L 0.16 TCGA-BF-AAP7-01 1 185137515 185137515 G A SWT1 Missense_Mutation p.R70K 0.06 tolerated(0.34) benign(0.008) TCGA-BF-AAP7-01 1 197071972 197071972 G A ASPM Missense_Mutation p.H2137Y 0.15 tolerated(0.67) benign(0.027) TCGA-BF-AAP7-01 1 197091420 197091420 C A ASPM Nonsense_Mutation p.E1204* 0.17 TCGA-BF-AAP7-01 1 202119507 202119507 G A PTPN7 Silent p.G412G 0.09 TCGA-BF-AAP7-01 1 202278281 202278281 C T LGR6 Silent p.S461S 0.12 TCGA-BF-AAP7-01 1 207643325 207643325 G A CR2 Missense_Mutation p.R368Q 0.20 tolerated(1) benign(0.002) TCGA-BF-AAP7-01 1 21014148 21014148 C T KIF17 Silent p.E557E 0.24 TCGA-BF-AAP7-01 1 212799585 212799585 C T FAM71A Nonsense_Mutation p.Q456* 0.18 TCGA-BF-AAP7-01 1 226127273 226127273 C T LEFTY2 Nonsense_Mutation p.W175* 0.24 TCGA-BF-AAP7-01 1 228248049 228248049 C T WNT3A 3'UTR 0.18 TCGA-BF-AAP7-01 1 22974214 22974214 G A C1QC Missense_Mutation p.D226N 0.27 tolerated(0.05) benign(0.003) TCGA-BF-AAP7-01 1 23760006 23760006 C T ASAP3 Missense_Mutation p.G680E 0.22 deleterious(0) possibly_damaging(0.898) TCGA-BF-AAP7-01 1 237947464 237947464 A G RYR2 Missense_Mutation p.E4151G 0.21 possibly_damaging(0.865) TCGA-BF-AAP7-01 1 240070819 240070819 G A CHRM3 Missense_Mutation p.S23N 0.13 tolerated_low_confidence(0.94) benign(0.002) TCGA-BF-AAP7-01 1 24463727 24463727 C T IL22RA1 Silent p.V83V 0.27 TCGA-BF-AAP7-01 1 247063521 247063521 A G AHCTF1 Silent p.S435S 0.30 TCGA-BF-AAP7-01 1 247588172 247588172 G A NLRP3 Missense_Mutation p.G476E 0.13 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 1 247588370 247588370 G A NLRP3 Missense_Mutation p.G542E 0.23 tolerated(0.14) benign(0.005) TCGA-BF-AAP7-01 1 247978556 247978556 G A OR14A16 Missense_Mutation p.A159V 0.36 tolerated(0.12) possibly_damaging(0.479) TCGA-BF-AAP7-01 1 248004707 248004707 G A OR11L1 Silent p.S164S 0.08 TCGA-BF-AAP7-01 1 248112512 248112512 C T OR2L8 Missense_Mutation p.A118V 0.11 deleterious(0) possibly_damaging(0.574) TCGA-BF-AAP7-01 1 26104668 26104668 C T MAN1C1 Silent p.L444L 0.10 TCGA-BF-AAP7-01 1 26737352 26737352 G A LIN28A 5'UTR 0.19 TCGA-BF-AAP7-01 1 26737353 26737353 G A LIN28A 5'UTR 0.19 TCGA-BF-AAP7-01 1 27223842 27223842 G A GPATCH3 Missense_Mutation p.P276S 0.20 tolerated(0.66) benign(0.004) TCGA-BF-AAP7-01 1 32201243 32201243 G A BAI2 Silent p.I1097I 0.18 TCGA-BF-AAP7-01 1 32745813 32745813 T C LCK Splice_Site p.X443_splice 0.10 TCGA-BF-AAP7-01 1 34037314 34037314 G A CSMD2 Missense_Mutation p.P2594L 0.13 deleterious(0.03) benign(0.366) TCGA-BF-AAP7-01 1 40703217 40703217 G T RLF Missense_Mutation p.C948F 0.17 deleterious(0.02) benign(0.339) TCGA-BF-AAP7-01 1 45501472 45501472 C T ZSWIM5 Missense_Mutation p.E727K 0.18 tolerated(0.22) unknown(0) TCGA-BF-AAP7-01 1 47495683 47495683 G A CYP4X1 Missense_Mutation p.E67K 0.21 tolerated(0.21) benign(0.21) TCGA-BF-AAP7-01 1 57425703 57425703 T G C8B Missense_Mutation p.Q80P 0.25 deleterious(0) probably_damaging(0.921) TCGA-BF-AAP7-01 1 62732435 62732435 G A KANK4 Missense_Mutation p.P763L 0.17 tolerated(0.07) benign(0.003) TCGA-BF-AAP7-01 1 7886603 7886603 C T PER3 Missense_Mutation p.S666L 0.14 tolerated(0.1) possibly_damaging(0.602) TCGA-BF-AAP7-01 1 8073662 8073662 G A ERRFI1 Missense_Mutation p.P333S 0.15 deleterious(0) probably_damaging(0.997) TCGA-BF-AAP7-01 1 85113096 85113096 A C SSX2IP 3'UTR 0.14 TCGA-BF-AAP7-01 1 93301943 93301943 C T RPL5 Missense_Mutation p.P174L 0.25 deleterious(0.03) benign(0.008) TCGA-BF-AAP7-01 1 987169 987169 C T AGRN Silent p.V1875V 0.16 TCGA-BF-AAP7-01 20 10536907 10536907 T A SLX4IP Missense_Mutation p.L19H 0.07 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 20 13765839 13765839 G A NDUFAF5 Missense_Mutation p.R42K 0.29 tolerated(0.95) benign(0.001) TCGA-BF-AAP7-01 20 1552585 1552585 C T SIRPB1 Missense_Mutation p.D178N 0.26 tolerated(1) benign(0.007) TCGA-BF-AAP7-01 20 24993448 24993448 G A ACSS1 Silent p.I569I 0.16 TCGA-BF-AAP7-01 20 30584516 30584516 C T XKR7 Silent p.I332I 0.11 TCGA-BF-AAP7-01 20 31815441 31815441 G A BPIFA3 3'UTR 0.19 TCGA-BF-AAP7-01 20 3236695 3236695 T A C20orf194 Missense_Mutation p.K1073M 0.15 deleterious(0.03) probably_damaging(0.983) TCGA-BF-AAP7-01 20 32873268 32873268 C T AHCY Missense_Mutation p.G382E 0.13 tolerated_low_confidence(0.08) possibly_damaging(0.906) TCGA-BF-AAP7-01 20 36841536 36841536 G A KIAA1755 Missense_Mutation p.R1171C 0.19 tolerated(0.3) benign(0.001) TCGA-BF-AAP7-01 20 40033606 40033606 G A CHD6 Missense_Mutation p.P2592L 0.15 tolerated(0.06) benign(0.345) TCGA-BF-AAP7-01 20 40033607 40033607 G A CHD6 Missense_Mutation p.P2592S 0.15 tolerated(1) benign(0.019) TCGA-BF-AAP7-01 20 43386760 43386760 C T RIMS4 Missense_Mutation p.G102E 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BF-AAP7-01 20 44181907 44181907 C T WFDC8 Missense_Mutation p.G152R 0.24 deleterious(0.03) probably_damaging(0.969) TCGA-BF-AAP7-01 20 4705186 4705186 G A PRND Splice_Site 0.16 TCGA-BF-AAP7-01 20 47859212 47859212 G A DDX27 Missense_Mutation p.R764Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 20 50140227 50140227 G A NFATC2 Missense_Mutation p.P185S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 20 50407408 50407408 C T SALL4 Silent p.G538G 0.18 TCGA-BF-AAP7-01 20 51872924 51872924 C T TSHZ2 Missense_Mutation p.S976L 0.18 tolerated(0.66) possibly_damaging(0.636) TCGA-BF-AAP7-01 20 9351939 9351939 A G PLCB4 Silent p.G194G 0.16 TCGA-BF-AAP7-01 21 10934106 10934106 C T TPTE Missense_Mutation p.D291N 0.06 tolerated(0.16) possibly_damaging(0.55) TCGA-BF-AAP7-01 21 34134572 34134572 G A PAXBP1 Nonsense_Mutation p.R236* 0.33 TCGA-BF-AAP7-01 21 34923953 34923953 T C SON Silent p.L806L 0.15 TCGA-BF-AAP7-01 21 39580283 39580283 C T DSCR10 RNA 0.17 TCGA-BF-AAP7-01 21 39671687 39671687 C T KCNJ15 Silent p.I168I 0.08 TCGA-BF-AAP7-01 21 45564905 45564905 C T C21orf33 3'UTR 0.20 TCGA-BF-AAP7-01 22 16448966 16448966 C T OR11H1 Missense_Mutation p.G280E 0.12 tolerated(0.32) benign(0.006) TCGA-BF-AAP7-01 22 17619157 17619157 G A CECR5 Silent p.A342A 0.12 TCGA-BF-AAP7-01 22 17619158 17619158 G A CECR5 Missense_Mutation p.A342V 0.12 tolerated(0.19) benign(0.003) TCGA-BF-AAP7-01 22 24481057 24481057 C T CABIN1 Silent p.S1072S 0.20 TCGA-BF-AAP7-01 22 26157062 26157062 G A MYO18B Translation_Start_Site p.M1? 0.18 deleterious(0) benign(0.323) TCGA-BF-AAP7-01 22 30204123 30204123 C T ASCC2 Silent p.K295K 0.19 TCGA-BF-AAP7-01 22 30387572 30387572 G A MTMR3 Missense_Mutation p.E125K 0.20 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP7-01 22 36692948 36692948 G A MYH9 Silent p.I1071I 0.14 TCGA-BF-AAP7-01 22 38155254 38155254 C G TRIOBP Missense_Mutation p.P2103A 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-BF-AAP7-01 22 38155255 38155255 C T TRIOBP Missense_Mutation p.P2103L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BF-AAP7-01 22 40662617 40662617 G A TNRC6B Missense_Mutation p.G795S 0.18 tolerated(0.84) benign(0.019) TCGA-BF-AAP7-01 22 41257883 41257883 T A DNAJB7 Missense_Mutation p.K39I 0.23 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 22 41605598 41605598 C T L3MBTL2 Intron 0.20 TCGA-BF-AAP7-01 22 50688887 50688887 G A HDAC10 Missense_Mutation p.S87F 0.18 deleterious(0) probably_damaging(0.953) TCGA-BF-AAP7-01 2 103299760 103299760 G A SLC9A2 Missense_Mutation p.E349K 0.15 deleterious(0.04) probably_damaging(0.983) TCGA-BF-AAP7-01 2 107021681 107021681 C T RGPD3 Silent p.E1757E 0.08 TCGA-BF-AAP7-01 2 120197720 120197720 C A SCTR Missense_Mutation p.Q432H 0.26 tolerated(0.2) benign(0.252) TCGA-BF-AAP7-01 2 128471185 128471185 G A WDR33 Missense_Mutation p.P1094S 0.16 tolerated_low_confidence(0.29) benign(0.063) TCGA-BF-AAP7-01 2 135659414 135659414 G A ACMSD Missense_Mutation p.R332K 0.14 tolerated(0.71) benign(0) TCGA-BF-AAP7-01 2 138030207 138030207 G A THSD7B Missense_Mutation p.D791N 0.26 tolerated(0.4) possibly_damaging(0.728) TCGA-BF-AAP7-01 2 149243344 149243344 A G MBD5 Missense_Mutation p.N960S 0.24 tolerated_low_confidence(0.18) unknown(0) TCGA-BF-AAP7-01 2 166894489 166894489 T G SCN1A Missense_Mutation p.S915R 0.22 deleterious(0.04) benign(0.068) TCGA-BF-AAP7-01 2 170028582 170028582 G A LRP2 Missense_Mutation p.R3736C 0.25 probably_damaging(1) TCGA-BF-AAP7-01 2 179197709 179197709 C T OSBPL6 Missense_Mutation p.P200S 0.25 tolerated(0.12) probably_damaging(0.959) TCGA-BF-AAP7-01 2 179428340 179428340 C T TTN Missense_Mutation p.E27507K 0.16 TCGA-BF-AAP7-01 2 186671547 186671547 G A FSIP2 Silent p.E5927E 0.26 TCGA-BF-AAP7-01 2 202619390 202619390 G A ALS2 Silent p.S492S 0.23 TCGA-BF-AAP7-01 2 207173735 207173735 G A ZDBF2 Missense_Mutation p.D1495N 0.26 deleterious(0.01) possibly_damaging(0.539) TCGA-BF-AAP7-01 2 210574692 210574692 C T MAP2 Missense_Mutation p.P1596L 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 2 210881249 210881249 C T RPE Missense_Mutation p.P121S 0.23 deleterious(0.02) possibly_damaging(0.872) TCGA-BF-AAP7-01 2 210881250 210881250 C T RPE Missense_Mutation p.P121L 0.24 deleterious(0) possibly_damaging(0.908) TCGA-BF-AAP7-01 2 212530202 212530202 C T ERBB4 Missense_Mutation p.G573S 0.31 deleterious(0.01) probably_damaging(0.937) TCGA-BF-AAP7-01 2 215279067 215279067 G A VWC2L Silent p.G50G 0.22 TCGA-BF-AAP7-01 2 215843530 215843530 C G ABCA12 Missense_Mutation p.E1659Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 2 215896563 215896563 G A ABCA12 Missense_Mutation p.P348L 0.24 deleterious(0) possibly_damaging(0.754) TCGA-BF-AAP7-01 2 220046875 220046875 G A FAM134A Missense_Mutation p.E386K 0.18 tolerated(0.26) benign(0.007) TCGA-BF-AAP7-01 2 230911202 230911202 G A SLC16A14 Missense_Mutation p.P214S 0.31 tolerated(0.78) benign(0.002) TCGA-BF-AAP7-01 2 234601749 234601749 T G UGT1A6 Silent p.P33P 0.15 TCGA-BF-AAP7-01 2 242065645 242065645 G A PASK Silent p.S895S 0.20 TCGA-BF-AAP7-01 2 242430518 242430518 C T FARP2 Silent p.S849S 0.17 TCGA-BF-AAP7-01 2 26696027 26696027 G A OTOF Missense_Mutation p.R1236C 0.25 deleterious(0.02) benign(0.339) TCGA-BF-AAP7-01 2 27706523 27706523 G A IFT172 Missense_Mutation p.R136C 0.12 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 2 27800771 27800771 G A C2orf16 Silent p.R444R 0.12 TCGA-BF-AAP7-01 2 33518234 33518234 C T LTBP1 Silent p.D1040D 0.14 TCGA-BF-AAP7-01 2 48050401 48050407 ATGGTGA - FBXO11 Frame_Shift_Del p.I497Mfs*18 0.20 TCGA-BF-AAP7-01 2 55462742 55462742 A T RPS27A 3'UTR 0.19 TCGA-BF-AAP7-01 2 62449838 62449838 C T B3GNT2 Silent p.I161I 0.24 TCGA-BF-AAP7-01 2 62449839 62449839 C T B3GNT2 Missense_Mutation p.R162W 0.25 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 2 63220763 63220763 T G EHBP1 Silent p.T1015T 0.20 TCGA-BF-AAP7-01 2 68882298 68882298 G A PROKR1 Missense_Mutation p.E258K 0.18 tolerated(0.39) benign(0.124) TCGA-BF-AAP7-01 2 70890821 70890821 G C ADD2 Silent p.P639P 0.24 TCGA-BF-AAP7-01 2 71060949 71060949 C G CD207 Missense_Mutation p.E131D 0.06 tolerated(0.07) benign(0.11) TCGA-BF-AAP7-01 2 73198749 73198749 G A SFXN5 Silent p.L231L 0.11 TCGA-BF-AAP7-01 2 73651791 73651791 C T ALMS1 Missense_Mutation p.P333L 0.19 benign(0.173) TCGA-BF-AAP7-01 2 76975782 76975782 C T LRRTM4 3'UTR 0.23 TCGA-BF-AAP7-01 2 80136843 80136843 G A CTNNA2 Missense_Mutation p.D326N 0.26 tolerated(0.2) benign(0.095) TCGA-BF-AAP7-01 2 85571386 85571386 G A RETSAT Missense_Mutation p.P448S 0.17 tolerated(0.09) benign(0.253) TCGA-BF-AAP7-01 2 89160745 89160745 C T IGKJ3 Missense_Mutation p.V10M 0.12 unknown(0) TCGA-BF-AAP7-01 2 89416879 89416879 G A IGKV1-17 Missense_Mutation p.P102L 0.17 deleterious(0.03) benign(0.292) TCGA-BF-AAP7-01 2 9547700 9547700 A G ITGB1BP1 Silent p.L137L 0.18 TCGA-BF-AAP7-01 2 96458262 96458262 C T AC008268.2 RNA 0.22 TCGA-BF-AAP7-01 2 96992201 96992201 C T ITPRIPL1 5'UTR 0.29 TCGA-BF-AAP7-01 2 96992203 96992203 C T ITPRIPL1 5'UTR 0.29 TCGA-BF-AAP7-01 3 113115433 113115433 A T WDR52 Missense_Mutation p.F571I 0.13 deleterious(0.01) possibly_damaging(0.651) TCGA-BF-AAP7-01 3 122631076 122631076 C T SEMA5B Missense_Mutation p.D1001N 0.39 tolerated(0.09) possibly_damaging(0.786) TCGA-BF-AAP7-01 3 126180864 126180864 G A ZXDC Silent p.S547S 0.13 TCGA-BF-AAP7-01 3 126180865 126180865 G A ZXDC Missense_Mutation p.S547F 0.13 deleterious(0) possibly_damaging(0.851) TCGA-BF-AAP7-01 3 129547314 129547314 C T TMCC1 5'UTR 0.27 TCGA-BF-AAP7-01 3 130174329 130174329 G A COL6A5 Silent p.L2203L 0.43 TCGA-BF-AAP7-01 3 130287019 130287019 C T COL6A6 Missense_Mutation p.R658W 0.20 deleterious(0.04) benign(0.06) TCGA-BF-AAP7-01 3 138456719 138456719 T C PIK3CB Missense_Mutation p.S211G 0.33 deleterious(0.02) possibly_damaging(0.719) TCGA-BF-AAP7-01 3 142430741 142430741 C T PLS1 Silent p.I594I 0.24 TCGA-BF-AAP7-01 3 169637298 169637298 C T SAMD7 Silent p.N4N 0.23 TCGA-BF-AAP7-01 3 170244438 170244438 G A SLC7A14 Silent p.V96V 0.17 TCGA-BF-AAP7-01 3 171330135 171330135 G A PLD1 Missense_Mutation p.S939L 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-BF-AAP7-01 3 185209480 185209480 C T TMEM41A Missense_Mutation p.D214N 0.31 tolerated(0.16) benign(0.008) TCGA-BF-AAP7-01 3 195997311 195997311 G A PCYT1A Missense_Mutation p.P31L 0.24 tolerated(0.1) benign(0.001) TCGA-BF-AAP7-01 3 196018199 196018199 C A TCTEX1D2 Nonstop_Mutation p.*143Lext*4 0.30 TCGA-BF-AAP7-01 3 21606125 21606125 G A ZNF385D Missense_Mutation p.P73S 0.30 deleterious(0.04) benign(0.015) TCGA-BF-AAP7-01 3 46488830 46488830 A T LTF Nonsense_Mutation p.C424* 0.22 TCGA-BF-AAP7-01 3 48725955 48725955 G A IP6K2 Silent p.V344V 0.25 TCGA-BF-AAP7-01 3 49154252 49154252 G A USP19 Missense_Mutation p.S345F 0.12 tolerated_low_confidence(0.07) benign(0.392) TCGA-BF-AAP7-01 3 49459003 49459003 G A AMT Silent p.T87T 0.10 TCGA-BF-AAP7-01 3 55052311 55052311 C T CACNA2D3 Missense_Mutation p.T985I 0.18 deleterious(0.03) possibly_damaging(0.685) TCGA-BF-AAP7-01 3 56026099 56026099 G A ERC2 Silent p.I747I 0.25 TCGA-BF-AAP7-01 3 58622926 58622926 T A FAM3D Nonsense_Mutation p.K134* 0.24 TCGA-BF-AAP7-01 3 73657760 73657760 G A PDZRN3 Missense_Mutation p.R267W 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP7-01 4 100239952 100239952 A G ADH1B Missense_Mutation p.V37A 0.19 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 4 104044221 104044221 A C CENPE Missense_Mutation p.F2317C 0.15 probably_damaging(0.982) TCGA-BF-AAP7-01 4 10567730 10567730 A C CLNK Missense_Mutation p.S65R 0.16 tolerated(0.38) benign(0.004) TCGA-BF-AAP7-01 4 106156763 106156763 C T TET2 Missense_Mutation p.P555L 0.23 tolerated(0.06) benign(0.015) TCGA-BF-AAP7-01 4 108991871 108991882 TCTTTCCGTGCT ATGCA LEF1 Frame_Shift_Del p.L351Ffs*3 0.19 TCGA-BF-AAP7-01 4 126336624 126336624 C T FAT4 Missense_Mutation p.T2169I 0.12 possibly_damaging(0.877) TCGA-BF-AAP7-01 4 126367600 126367600 C T FAT4 Missense_Mutation p.S2449F 0.19 probably_damaging(0.974) TCGA-BF-AAP7-01 4 148985592 148985592 G C ARHGAP10 Missense_Mutation p.V736L 0.28 tolerated(1) probably_damaging(0.996) TCGA-BF-AAP7-01 4 156757870 156757870 C T ASIC5 Silent p.K402K 0.19 TCGA-BF-AAP7-01 4 158254478 158254478 G A GRIA2 Missense_Mutation p.M376I 0.11 tolerated(0.52) benign(0.058) TCGA-BF-AAP7-01 4 159956195 159956195 C T C4orf45 Missense_Mutation p.M18I 0.12 tolerated(0.15) benign(0.022) TCGA-BF-AAP7-01 4 165961533 165961533 T G TRIM60 Missense_Mutation p.F103L 0.20 tolerated(0.35) benign(0.003) TCGA-BF-AAP7-01 4 175898020 175898020 C T ADAM29 Silent p.F448F 0.22 TCGA-BF-AAP7-01 4 187195308 187195308 G A F11 Missense_Mutation p.G122S 0.13 deleterious(0.02) probably_damaging(1) TCGA-BF-AAP7-01 4 20529919 20529919 C T SLIT2 Intron 0.20 TCGA-BF-AAP7-01 4 24550611 24550611 T C DHX15 Missense_Mutation p.E372G 0.09 deleterious(0.03) possibly_damaging(0.756) TCGA-BF-AAP7-01 4 2746198 2746198 C T TNIP2 Silent p.R314R 0.13 TCGA-BF-AAP7-01 4 2746199 2746199 C T TNIP2 Missense_Mutation p.R314K 0.13 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP7-01 4 2746656 2746656 G A TNIP2 Missense_Mutation p.A225V 0.17 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 4 3516535 3516535 G T LRPAP1 Missense_Mutation p.R319S 0.15 deleterious(0) possibly_damaging(0.904) TCGA-BF-AAP7-01 4 40438563 40438563 T A RBM47 Missense_Mutation p.S409C 0.26 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-BF-AAP7-01 4 7533264 7533264 G A SORCS2 Missense_Mutation p.D186N 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-BF-AAP7-01 4 76842116 76842116 G A NAAA Missense_Mutation p.P276L 0.16 deleterious(0) possibly_damaging(0.824) TCGA-BF-AAP7-01 4 8293142 8293142 C T HTRA3 Missense_Mutation p.P252S 0.14 deleterious(0.04) probably_damaging(1) TCGA-BF-AAP7-01 4 8293143 8293143 C T HTRA3 Missense_Mutation p.P252L 0.14 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 4 87744810 87744810 G A SLC10A6 3'UTR 0.29 TCGA-BF-AAP7-01 4 88732898 88732898 G A IBSP Missense_Mutation p.E264K 0.20 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 4 9452186 9452186 C T DEFB131 Silent p.F53F 0.32 TCGA-BF-AAP7-01 4 96163742 96163742 C T UNC5C Missense_Mutation p.D316N 0.35 deleterious(0.03) probably_damaging(1) TCGA-BF-AAP7-01 4 9784685 9784685 C T DRD5 Silent p.F344F 0.29 TCGA-BF-AAP7-01 5 101813510 101813510 G A SLCO6A1 Silent p.F224F 0.17 TCGA-BF-AAP7-01 5 11098696 11098696 C T CTNND2 Silent p.G876G 0.15 TCGA-BF-AAP7-01 5 139216459 139216459 G A PSD2 Silent p.T489T 0.18 TCGA-BF-AAP7-01 5 140574364 140574364 C T PCDHB10 Silent p.L747L 0.21 TCGA-BF-AAP7-01 5 140725281 140725281 G A PCDHGA3 Missense_Mutation p.E561K 0.18 deleterious_low_confidence(0.02) benign(0.445) TCGA-BF-AAP7-01 5 140737186 140737186 C T PCDHGA4 Nonsense_Mutation p.Q807* 0.17 TCGA-BF-AAP7-01 5 140866066 140866066 C T PCDHGC4 Silent p.F442F 0.24 TCGA-BF-AAP7-01 5 150867796 150867796 C T SLC36A1 Missense_Mutation p.S471F 0.27 deleterious(0.01) benign(0.439) TCGA-BF-AAP7-01 5 153085355 153085355 G A GRIA1 Missense_Mutation p.M527I 0.17 deleterious(0) probably_damaging(0.989) TCGA-BF-AAP7-01 5 156590308 156590308 T C FAM71B Missense_Mutation p.E323G 0.21 tolerated(0.42) benign(0.037) TCGA-BF-AAP7-01 5 158267099 158267099 G A EBF1 Missense_Mutation p.L192F 0.16 deleterious(0.02) possibly_damaging(0.672) TCGA-BF-AAP7-01 5 176289687 176289687 C T UNC5A Missense_Mutation p.H45Y 0.22 tolerated(0.09) benign(0.01) TCGA-BF-AAP7-01 5 180661124 180661124 G A TRIM41 Intron 0.09 TCGA-BF-AAP7-01 5 180661125 180661125 G A TRIM41 Intron 0.09 TCGA-BF-AAP7-01 5 24487920 24487920 C T CDH10 Missense_Mutation p.G740E 0.14 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 5 24498572 24498572 C T CDH10 Missense_Mutation p.D484N 0.24 deleterious(0) benign(0.1) TCGA-BF-AAP7-01 5 33615993 33615993 C T ADAMTS12 Silent p.R776R 0.20 TCGA-BF-AAP7-01 5 35753767 35753767 G A SPEF2 Silent p.K1124K 0.13 TCGA-BF-AAP7-01 5 35753768 35753768 G A SPEF2 Missense_Mutation p.E1125K 0.12 deleterious(0) benign(0.321) TCGA-BF-AAP7-01 5 38489273 38489273 G A LIFR Missense_Mutation p.P748S 0.23 tolerated(0.12) possibly_damaging(0.831) TCGA-BF-AAP7-01 5 65349356 65349356 T C ERBB2IP Missense_Mutation p.V737A 0.16 deleterious_low_confidence(0) benign(0.04) TCGA-BF-AAP7-01 5 68715678 68715678 C T MARVELD2 Missense_Mutation p.R156W 0.14 deleterious(0.03) benign(0.339) TCGA-BF-AAP7-01 5 76173554 76173554 A G S100Z Missense_Mutation p.K66R 0.17 tolerated(0.83) benign(0.008) TCGA-BF-AAP7-01 5 79028932 79028932 T C CMYA5 Silent p.L1448L 0.20 TCGA-BF-AAP7-01 5 79033133 79033133 C T CMYA5 Missense_Mutation p.H2849Y 0.19 benign(0.418) TCGA-BF-AAP7-01 5 80366276 80366276 C T RASGRF2 Intron 0.23 TCGA-BF-AAP7-01 5 90074370 90074370 C T GPR98 Missense_Mutation p.P4265S 0.19 probably_damaging(0.96) TCGA-BF-AAP7-01 5 94022323 94022323 C T ANKRD32 Missense_Mutation p.S674F 0.12 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 5 98194693 98194693 C T CHD1 Silent p.L1517L 0.20 TCGA-BF-AAP7-01 6 100062597 100062597 G A PRDM13 Missense_Mutation p.D696N 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BF-AAP7-01 6 101315838 101315838 G A ASCC3 Silent p.S12S 0.16 TCGA-BF-AAP7-01 6 110763500 110763500 G A SLC22A16 Missense_Mutation p.S377F 0.14 deleterious(0.03) possibly_damaging(0.652) TCGA-BF-AAP7-01 6 117127656 117127656 C T GPRC6A Nonsense_Mutation p.W404* 0.12 TCGA-BF-AAP7-01 6 132271534 132271534 C T CTGF Missense_Mutation p.D147N 0.25 tolerated(0.06) possibly_damaging(0.677) TCGA-BF-AAP7-01 6 134491525 134491525 G A SGK1 Missense_Mutation p.P488S 0.20 tolerated(0.2) benign(0.413) TCGA-BF-AAP7-01 6 136599597 136599597 G A BCLAF1 Missense_Mutation p.S141L 0.07 deleterious_low_confidence(0) unknown(0) TCGA-BF-AAP7-01 6 146870703 146870703 A T RAB32 Missense_Mutation p.L118F 0.20 tolerated(0.06) possibly_damaging(0.497) TCGA-BF-AAP7-01 6 152553334 152553334 C T SYNE1 Missense_Mutation p.E6927K 0.19 probably_damaging(0.963) TCGA-BF-AAP7-01 6 153042916 153042916 G A MYCT1 Missense_Mutation p.G79E 0.10 deleterious(0) probably_damaging(0.929) TCGA-BF-AAP7-01 6 158923305 158923305 C T TULP4 Silent p.F870F 0.23 TCGA-BF-AAP7-01 6 163510306 163510306 G A PACRG Missense_Mutation p.R160Q 0.19 deleterious(0) probably_damaging(0.988) TCGA-BF-AAP7-01 6 17764428 17764428 G A KIF13A Silent p.L1777L 0.22 TCGA-BF-AAP7-01 6 31515496 31515496 C T NFKBIL1 Missense_Mutation p.P9S 0.28 tolerated_low_confidence(0.15) possibly_damaging(0.609) TCGA-BF-AAP7-01 6 31760588 31760588 C G VARS Missense_Mutation p.V203L 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-BF-AAP7-01 6 31895412 31895412 G A C2 5'UTR 0.25 TCGA-BF-AAP7-01 6 31940093 31940093 G A STK19 Missense_Mutation p.E79K 0.12 deleterious_low_confidence(0.02) benign(0.004) TCGA-BF-AAP7-01 6 32036437 32036437 G A TNXB Missense_Mutation p.P1984S 0.19 probably_damaging(0.997) TCGA-BF-AAP7-01 6 32151441 32151441 G A AGER Silent p.G82G 0.19 TCGA-BF-AAP7-01 6 32183129 32183129 T C NOTCH4 Missense_Mutation p.N632S 0.29 tolerated(0.46) benign(0.009) TCGA-BF-AAP7-01 6 33372949 33372949 C T KIFC1 Silent p.T359T 0.14 TCGA-BF-AAP7-01 6 38905937 38905937 G A DNAH8 Missense_Mutation p.M3700I 0.23 benign(0.15) TCGA-BF-AAP7-01 6 43106982 43106982 G A PTK7 Missense_Mutation p.E499K 0.21 tolerated(0.29) possibly_damaging(0.541) TCGA-BF-AAP7-01 6 43270022 43270022 C T SLC22A7 Silent p.F382F 0.13 TCGA-BF-AAP7-01 6 45480115 45480115 C T RUNX2 Missense_Mutation p.A331V 0.18 tolerated(0.07) benign(0.376) TCGA-BF-AAP7-01 6 47763237 47763237 G A OPN5 Missense_Mutation p.E232K 0.19 tolerated(0.15) benign(0.009) TCGA-BF-AAP7-01 6 49586952 49586952 C T RHAG Missense_Mutation p.G94D 0.13 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP7-01 6 49806231 49806231 C T CRISP1 Missense_Mutation p.D181N 0.09 tolerated(0.77) benign(0.004) TCGA-BF-AAP7-01 6 54804719 54804719 C T FAM83B Missense_Mutation p.S317F 0.10 deleterious(0) probably_damaging(0.986) TCGA-BF-AAP7-01 6 54805549 54805549 C T FAM83B Missense_Mutation p.P594S 0.11 tolerated(0.54) benign(0.003) TCGA-BF-AAP7-01 6 70071293 70071293 G T BAI3 Missense_Mutation p.L1376F 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-BF-AAP7-01 6 7555963 7555963 G A DSP Silent p.T61T 0.23 TCGA-BF-AAP7-01 6 99999745 99999745 G A CCNC Missense_Mutation p.P125S 0.17 tolerated(0.45) benign(0.002) TCGA-BF-AAP7-01 7 100365598 100365598 C T ZAN Missense_Mutation p.P1669S 0.18 unknown(0) TCGA-BF-AAP7-01 7 100490344 100490344 G A ACHE Silent p.A388A 0.14 TCGA-BF-AAP7-01 7 100551603 100551603 C T MUC3A Silent p.S118S 0.16 TCGA-BF-AAP7-01 7 100678109 100678109 G A MUC17 Missense_Mutation p.A1138T 0.21 unknown(0) TCGA-BF-AAP7-01 7 116550328 116550328 C T CAPZA2 Missense_Mutation p.P183L 0.19 tolerated(0.11) benign(0.222) TCGA-BF-AAP7-01 7 138329552 138329552 C T SVOPL Silent p.G233G 0.16 TCGA-BF-AAP7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-BF-AAP7-01 7 142460762 142460762 G A PRSS1 Missense_Mutation p.G212E 0.25 deleterious(0) probably_damaging(0.993) TCGA-BF-AAP7-01 7 142510322 142510322 G A TRBV30 Missense_Mutation p.S95F 0.32 deleterious(0.02) possibly_damaging(0.837) TCGA-BF-AAP7-01 7 143747649 143747649 C T OR2A5 Missense_Mutation p.S52F 0.17 tolerated(0.62) benign(0.013) TCGA-BF-AAP7-01 7 14724892 14724892 C T DGKB Silent p.G269G 0.25 TCGA-BF-AAP7-01 7 150174272 150174272 C A GIMAP8 Missense_Mutation p.L468I 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-BF-AAP7-01 7 150741245 150741245 C T ABCB8 Silent p.H651H 0.24 TCGA-BF-AAP7-01 7 150741246 150741246 C T ABCB8 Missense_Mutation p.R652W 0.23 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 7 20199655 20199655 C T MACC1 Missense_Mutation p.G110E 0.19 tolerated(0.66) benign(0.011) TCGA-BF-AAP7-01 7 20199656 20199656 C T MACC1 Missense_Mutation p.G110R 0.18 tolerated(0.46) benign(0.317) TCGA-BF-AAP7-01 7 21603877 21603877 G A DNAH11 Silent p.T352T 0.18 TCGA-BF-AAP7-01 7 23808674 23808674 G A STK31 Missense_Mutation p.E493K 0.16 tolerated(0.07) benign(0.099) TCGA-BF-AAP7-01 7 2645623 2645623 C T IQCE Silent p.A619A 0.29 TCGA-BF-AAP7-01 7 47869084 47869084 C T PKD1L1 Nonsense_Mutation p.W2225* 0.25 TCGA-BF-AAP7-01 7 50097699 50097699 G A ZPBP Missense_Mutation p.L125F 0.19 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 7 75694217 75694217 C T MDH2 Silent p.F277F 0.17 TCGA-BF-AAP7-01 7 82585554 82585554 G A PCLO Missense_Mutation p.S1572F 0.18 unknown(0) TCGA-BF-AAP7-01 7 83119516 83119516 C T SEMA3E Missense_Mutation p.D64N 0.20 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 7 87529609 87529609 C T DBF4 Missense_Mutation p.P252S 0.23 deleterious(0) probably_damaging(0.994) TCGA-BF-AAP7-01 7 98460819 98460819 C T TMEM130 Missense_Mutation p.G97D 0.20 deleterious(0) possibly_damaging(0.906) TCGA-BF-AAP7-01 7 98569462 98569462 C T TRRAP Missense_Mutation p.T2571I 0.15 benign(0.005) TCGA-BF-AAP7-01 8 105521240 105521240 G A LRP12 Missense_Mutation p.P67S 0.18 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP7-01 8 10583832 10583832 C T SOX7 Missense_Mutation p.D247N 0.17 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP7-01 8 120116066 120116066 G A COLEC10 Missense_Mutation p.R125Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP7-01 8 121483095 121483095 T G MTBP Missense_Mutation p.S361R 0.16 deleterious(0) probably_damaging(0.934) TCGA-BF-AAP7-01 8 131165031 131165031 C T ASAP1 Missense_Mutation p.R344K 0.17 tolerated(1) possibly_damaging(0.858) TCGA-BF-AAP7-01 8 133192453 133192453 C T KCNQ3 Missense_Mutation p.R243K 0.13 deleterious(0) benign(0.307) TCGA-BF-AAP7-01 8 144657429 144657429 G A NAPRT1 Nonsense_Mutation p.Q460* 0.27 TCGA-BF-AAP7-01 8 144800228 144800228 G A MAPK15 Silent p.R59R 0.17 TCGA-BF-AAP7-01 8 145661086 145661086 C T TONSL Silent p.R910R 0.10 TCGA-BF-AAP7-01 8 16026357 16026357 C T MSR1 Silent p.T80T 0.14 TCGA-BF-AAP7-01 8 27461884 27461884 C T CLU Silent p.R286R 0.12 TCGA-BF-AAP7-01 8 2820103 2820103 G A CSMD1 Silent p.F3171F 0.24 TCGA-BF-AAP7-01 8 2965277 2965277 C T CSMD1 Silent p.Q2266Q 0.31 TCGA-BF-AAP7-01 8 48740884 48740884 G A PRKDC Missense_Mutation p.L2807F 0.26 probably_damaging(0.999) TCGA-BF-AAP7-01 8 52322000 52322000 G A PXDNL Silent p.R728R 0.24 TCGA-BF-AAP7-01 8 61777779 61777780 - CAGAATCTC CHD7 In_Frame_Ins p.N2760_L2761insPES 0.13 TCGA-BF-AAP7-01 8 62555951 62555951 C T ASPH Missense_Mutation p.D251N 0.18 tolerated_low_confidence(0.17) benign(0.229) TCGA-BF-AAP7-01 8 68939498 68939498 C A PREX2 Silent p.P161P 0.19 TCGA-BF-AAP7-01 8 68992729 68992729 C T PREX2 Missense_Mutation p.S565L 0.12 deleterious(0) benign(0.021) TCGA-BF-AAP7-01 8 73480108 73480108 G A KCNB2 Missense_Mutation p.E47K 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-BF-AAP7-01 8 81083657 81083657 C A TPD52 Intron 0.24 TCGA-BF-AAP7-01 8 8175949 8175949 G A SGK223 Silent p.I1312I 0.19 TCGA-BF-AAP7-01 8 95186083 95186083 G A CDH17 Missense_Mutation p.P242L 0.16 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 8 96166339 96166339 G A PLEKHF2 Missense_Mutation p.G23R 0.21 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 8 96166340 96166340 G A PLEKHF2 Missense_Mutation p.G23E 0.22 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 9 101832037 101832037 G T COL15A1 Missense_Mutation p.D1346Y 0.20 deleterious(0) possibly_damaging(0.884) TCGA-BF-AAP7-01 9 104238679 104238679 G A TMEM246 Silent p.F232F 0.25 TCGA-BF-AAP7-01 9 117087419 117087419 C T ORM1 Missense_Mutation p.T176I 0.14 tolerated(0.06) possibly_damaging(0.801) TCGA-BF-AAP7-01 9 140880903 140880903 T C CACNA1B Missense_Mutation p.L603P 0.25 deleterious(0) benign(0.365) TCGA-BF-AAP7-01 9 21367934 21367934 C T IFNA13 Missense_Mutation p.D26N 0.22 deleterious(0.04) benign(0.01) TCGA-BF-AAP7-01 9 21970984 21970986 TCG CC CDKN2A Frame_Shift_Del p.D125Vfs*21 0.19 TCGA-BF-AAP7-01 9 35092627 35092627 C A PIGO Silent p.A419A 0.23 TCGA-BF-AAP7-01 9 6328931 6328931 G A TPD52L3 Silent p.V112V 0.32 TCGA-BF-AAP7-01 9 79323706 79323706 C T PRUNE2 Missense_Mutation p.E1162K 0.23 tolerated(0.25) probably_damaging(0.909) TCGA-BF-AAP7-01 9 79865028 79865028 C T VPS13A Missense_Mutation p.R685C 0.29 deleterious(0.04) possibly_damaging(0.886) TCGA-BF-AAP7-01 9 96214967 96214967 C T FAM120AOS Missense_Mutation p.D9N 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-BF-AAP7-01 X 100668153 100668153 G A HNRNPH2 Missense_Mutation p.G393S 0.19 tolerated_low_confidence(0.47) benign(0.013) TCGA-BF-AAP7-01 X 101972082 101972082 C T GPRASP2 Missense_Mutation p.S762L 0.19 deleterious(0) probably_damaging(0.987) TCGA-BF-AAP7-01 X 107464487 107464487 C T COL4A6 Missense_Mutation p.G89R 0.22 unknown(0) TCGA-BF-AAP7-01 X 107866040 107866040 G A COL4A5 Missense_Mutation p.E968K 0.18 unknown(0) TCGA-BF-AAP7-01 X 108912333 108912333 G A ACSL4 Silent p.L399L 0.17 TCGA-BF-AAP7-01 X 11135393 11135393 C T HCCS Missense_Mutation p.P87S 0.12 deleterious(0.05) possibly_damaging(0.838) TCGA-BF-AAP7-01 X 12692996 12692996 C T FRMPD4 Missense_Mutation p.S146L 0.21 deleterious(0) probably_damaging(0.996) TCGA-BF-AAP7-01 X 12736332 12736332 G A FRMPD4 Silent p.K1129K 0.16 TCGA-BF-AAP7-01 X 130409954 130409954 G A IGSF1 Silent p.P964P 0.25 TCGA-BF-AAP7-01 X 135104824 135104824 G A SLC9A6 Missense_Mutation p.G477E 0.14 tolerated(0.21) benign(0.407) TCGA-BF-AAP7-01 X 142717196 142717196 C T SLITRK4 Missense_Mutation p.E577K 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-BF-AAP7-01 X 148037165 148037165 G A AFF2 Silent p.L530L 0.12 TCGA-BF-AAP7-01 X 148037817 148037817 G A AFF2 Missense_Mutation p.E748K 0.23 tolerated(0.08) benign(0.171) TCGA-BF-AAP7-01 X 150793995 150793995 G A PASD1 Missense_Mutation p.E208K 0.17 tolerated(0.79) benign(0.012) TCGA-BF-AAP7-01 X 153073803 153073803 G A PDZD4 Intron 0.16 TCGA-BF-AAP7-01 X 153941664 153941664 G A GAB3 Silent p.S138S 0.17 TCGA-BF-AAP7-01 X 153941665 153941665 G A GAB3 Missense_Mutation p.S138F 0.17 deleterious(0.03) benign(0.031) TCGA-BF-AAP7-01 X 18342045 18342045 C T SCML2 Missense_Mutation p.D111N 0.18 deleterious(0) probably_damaging(1) TCGA-BF-AAP7-01 X 26157626 26157626 C T MAGEB18 Missense_Mutation p.A175V 0.20 tolerated(1) benign(0.023) TCGA-BF-AAP7-01 X 3229098 3229098 G A MXRA5 Silent p.S2382S 0.20 TCGA-BF-AAP7-01 X 34962792 34962792 G A FAM47B Missense_Mutation p.G615E 0.14 tolerated(0.11) probably_damaging(1) TCGA-BF-AAP7-01 X 37553546 37553546 G A XK Missense_Mutation p.E85K 0.27 deleterious(0) probably_damaging(0.933) TCGA-BF-AAP7-01 X 39933410 39933410 G A BCOR Missense_Mutation p.P397S 0.15 tolerated(0.47) benign(0.002) TCGA-BF-AAP7-01 X 43628647 43628647 C T MAOB Silent p.V418V 0.20 TCGA-BF-AAP7-01 X 44108061 44108061 G A EFHC2 Silent p.F320F 0.18 TCGA-BF-AAP7-01 X 46739242 46739242 C T RP2 3'UTR 0.21 TCGA-BF-AAP7-01 X 47434645 47434645 C T SYN1 Missense_Mutation p.G396D 0.21 deleterious(0) probably_damaging(0.998) TCGA-BF-AAP7-01 X 63412488 63412488 C T AMER1 Missense_Mutation p.E227K 0.21 tolerated(0.14) benign(0.016) TCGA-BF-AAP7-01 X 70679074 70679074 G A TAF1 Intron 0.16 TCGA-BF-AAP7-01 X 70824391 70824391 G A ACRC Missense_Mutation p.E422K 0.25 unknown(0) TCGA-BF-AAP7-01 X 73067682 73067682 G A XIST RNA 0.06 TCGA-BF-AAP7-01 X 73438455 73438455 G A MIR374B 5'Flank 0.11 TCGA-BF-AAP7-01 X 75396811 75396811 G A PBDC1 Silent p.E131E 0.23 TCGA-BF-AAP7-01 X 75396812 75396812 G T PBDC1 Nonsense_Mutation p.E132* 0.23 TCGA-BF-AAP7-01 X 75650361 75650361 C T MAGEE1 Missense_Mutation p.P680S 0.17 deleterious(0) possibly_damaging(0.774) TCGA-BF-AAP7-01 X 84525761 84525761 C T ZNF711 Missense_Mutation p.H405Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP8-01 11 35456348 35456348 G A PAMR1 Silent p.C463C 0.16 TCGA-BF-AAP8-01 13 99947202 99947202 G C GPR183 3'UTR 0.36 TCGA-BF-AAP8-01 17 56440009 56440009 G A RNF43 Missense_Mutation p.P195S 0.05 tolerated(0.05) benign(0.217) TCGA-BF-AAP8-01 19 11130284 11130284 A T SMARCA4 Missense_Mutation p.R841S 0.24 probably_damaging(0.999) TCGA-BF-AAP8-01 1 200376126 200376126 G A ZNF281 3'UTR 0.27 TCGA-BF-AAP8-01 20 43115339 43115339 C A TTPAL Missense_Mutation p.A248E 0.14 tolerated(0.36) benign(0.345) TCGA-BF-AAP8-01 2 71062872 71062872 A G CD207 Missense_Mutation p.F12S 0.09 deleterious(0) probably_damaging(0.951) TCGA-BF-AAP8-01 3 49153043 49153043 C T USP19 Missense_Mutation p.M572I 0.67 deleterious(0.01) probably_damaging(0.981) TCGA-BF-AAP8-01 3 52436607 52436620 CATCCCCTCACCTT - BAP1 Splice_Site p.X685_splice 0.40 TCGA-BF-AAP8-01 5 140176432 140176432 C T PCDHA2 Missense_Mutation p.T628M 0.08 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BF-AAP8-01 5 6622152 6622152 G A NSUN2 Missense_Mutation p.A200V 0.05 deleterious(0) probably_damaging(0.924) TCGA-BF-AAP8-01 6 47682157 47682157 C T GPR115 Silent p.S392S 0.63 TCGA-BF-AAP8-01 7 107115535 107115536 - T GPR22 Frame_Shift_Ins p.L345Ffs*27 0.24 TCGA-BF-AAP8-01 8 48511643 48511643 T C SPIDR Missense_Mutation p.W477R 0.16 tolerated(0.09) possibly_damaging(0.715) TCGA-BF-AAP8-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.43 deleterious(0) probably_damaging(0.999) TCGA-BF-AAP8-01 X 131762528 131762528 C T HS6ST2 Missense_Mutation p.R554H 0.74 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D3-A1Q1-06 10 23326295 23326295 G A ARMC3 Missense_Mutation p.G836R 0.35 deleterious(0) probably_damaging(0.989) TCGA-D3-A1Q1-06 10 5788339 5788339 C T FAM208B Silent p.G985G 0.41 TCGA-D3-A1Q1-06 11 102995935 102995935 T C DYNC2H1 Missense_Mutation p.S590P 0.37 possibly_damaging(0.847) TCGA-D3-A1Q1-06 11 119182246 119182246 G A MCAM Silent p.N467N 0.14 TCGA-D3-A1Q1-06 11 121031078 121031078 G A TECTA Missense_Mutation p.V1642I 0.36 tolerated(0.22) benign(0.025) TCGA-D3-A1Q1-06 11 20629080 20629080 G T SLC6A5 Silent p.V289V 0.47 TCGA-D3-A1Q1-06 12 51347824 51347824 C T HIGD1C Nonsense_Mutation p.Q15* 0.20 TCGA-D3-A1Q1-06 12 6958754 6958754 C T CDCA3 Silent p.R173R 0.13 TCGA-D3-A1Q1-06 12 7848184 7848184 C T GDF3 Silent p.V47V 0.19 TCGA-D3-A1Q1-06 12 93258729 93258729 C A EEA1 Missense_Mutation p.G51V 0.08 deleterious(0.02) possibly_damaging(0.781) TCGA-D3-A1Q1-06 14 21861979 21861979 C T CHD8 Missense_Mutation p.R1992H 0.24 tolerated_low_confidence(0.3) benign(0) TCGA-D3-A1Q1-06 14 24729191 24729191 G T TGM1 Nonsense_Mutation p.Y277* 0.51 TCGA-D3-A1Q1-06 14 51446212 51446212 T C TRIM9 Missense_Mutation p.R655G 0.29 deleterious(0.01) possibly_damaging(0.665) TCGA-D3-A1Q1-06 15 41795692 41795692 C G ITPKA 3'UTR 0.21 TCGA-D3-A1Q1-06 15 69325408 69325408 G A NOX5 Missense_Mutation p.A216T 0.68 tolerated(0.54) benign(0.002) TCGA-D3-A1Q1-06 16 20702419 20702419 G A ACSM1 Missense_Mutation p.S31F 0.24 deleterious(0.04) benign(0.01) TCGA-D3-A1Q1-06 16 29821392 29821392 G A MAZ Intron 0.13 TCGA-D3-A1Q1-06 16 56643177 56643177 T C MT2A Missense_Mutation p.C33R 0.21 deleterious(0.02) possibly_damaging(0.712) TCGA-D3-A1Q1-06 17 44626186 44626186 G - LRRC37A2 Frame_Shift_Del p.G1228Efs*21 0.13 TCGA-D3-A1Q1-06 17 65987905 65987905 A G C17orf58 3'UTR 0.38 TCGA-D3-A1Q1-06 17 7240098 7240098 C G ACAP1 Silent p.P15P 0.17 TCGA-D3-A1Q1-06 19 50169073 50169073 A - IRF3 5'Flank 0.11 TCGA-D3-A1Q1-06 19 55748038 55748039 - C PPP6R1 Frame_Shift_Ins p.A654Gfs*18 0.24 TCGA-D3-A1Q1-06 19 59060419 59060419 C T TRIM28 Missense_Mutation p.R492C 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q1-06 19 59067503 59067503 G A UBE2M Missense_Mutation p.R169W 0.22 deleterious(0.05) probably_damaging(0.938) TCGA-D3-A1Q1-06 1 114438597 114438597 C A AP4B1 Missense_Mutation p.G525V 0.64 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q1-06 1 115258748 115258748 C G NRAS Missense_Mutation p.G12R 0.76 deleterious(0.03) probably_damaging(0.926) TCGA-D3-A1Q1-06 1 185062302 185062302 T C RNF2 Missense_Mutation p.Y120H 0.45 deleterious(0) probably_damaging(0.987) TCGA-D3-A1Q1-06 1 197411473 197411473 T C CRB1 Intron 0.15 TCGA-D3-A1Q1-06 1 205632106 205632106 C G SLC45A3 Silent p.L271L 0.35 TCGA-D3-A1Q1-06 1 247264377 247264377 C T ZNF669 Missense_Mutation p.V232I 0.93 tolerated(0.46) benign(0.003) TCGA-D3-A1Q1-06 20 39317284 39317284 C T MAFB Silent p.S69S 0.30 TCGA-D3-A1Q1-06 20 43115234 43115234 A G TTPAL Splice_Site p.X214_splice 0.33 TCGA-D3-A1Q1-06 20 44184401 44184401 G A WFDC8 Silent p.C128C 0.22 TCGA-D3-A1Q1-06 20 46318883 46318883 C T SULF2 Missense_Mutation p.A242T 0.14 deleterious(0.05) possibly_damaging(0.705) TCGA-D3-A1Q1-06 22 42172254 42172254 G A MEI1 Missense_Mutation p.G898E 0.25 tolerated(0.22) probably_damaging(0.999) TCGA-D3-A1Q1-06 2 149528378 149528378 T G EPC2 Silent p.A416A 0.22 TCGA-D3-A1Q1-06 2 160604709 160604709 C A MARCH7 Missense_Mutation p.S303Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q1-06 2 179480121 179480121 C G TTN Missense_Mutation p.G16184A 0.51 TCGA-D3-A1Q1-06 2 201997825 201997825 T G CFLAR Missense_Mutation p.Y119D 0.14 deleterious(0.04) possibly_damaging(0.703) TCGA-D3-A1Q1-06 2 220404347 220404347 C G CHPF Missense_Mutation p.E696Q 0.27 tolerated(0.86) benign(0.01) TCGA-D3-A1Q1-06 2 242011004 242011004 C T SNED1 Silent p.G1201G 0.50 TCGA-D3-A1Q1-06 2 95846850 95846850 T A ZNF2 Missense_Mutation p.W93R 0.22 tolerated(0.11) benign(0.01) TCGA-D3-A1Q1-06 2 99785865 99785865 A T MITD1 Missense_Mutation p.F241L 0.17 deleterious(0.04) benign(0.411) TCGA-D3-A1Q1-06 2 99861803 99861803 G T LYG2 Silent p.I101I 0.17 TCGA-D3-A1Q1-06 3 10081425 10081425 G C FANCD2 Missense_Mutation p.M197I 0.24 tolerated(0.12) possibly_damaging(0.55) TCGA-D3-A1Q1-06 5 140564441 140564441 G A PCDHB16 Silent p.P769P 0.25 TCGA-D3-A1Q1-06 5 140724807 140724807 C T PCDHGA3 Missense_Mutation p.R403C 0.31 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-D3-A1Q1-06 5 149581914 149581914 G C SLC6A7 Missense_Mutation p.W288S 0.30 deleterious(0.02) benign(0.013) TCGA-D3-A1Q1-06 5 176024747 176024747 C G GPRIN1 Missense_Mutation p.A697P 0.24 tolerated(0.07) possibly_damaging(0.731) TCGA-D3-A1Q1-06 6 33146878 33146878 G A COL11A2 Missense_Mutation p.T442I 0.17 benign(0.242) TCGA-D3-A1Q1-06 6 33639958 33639958 G T ITPR3 Missense_Mutation p.D961Y 0.16 tolerated(0.13) benign(0.082) TCGA-D3-A1Q1-06 6 35289033 35289033 C T DEF6 Missense_Mutation p.S581F 0.20 deleterious(0) benign(0.046) TCGA-D3-A1Q1-06 7 133749303 133749303 A G EXOC4 3'UTR 0.13 TCGA-D3-A1Q1-06 7 149128939 149128939 G T ZNF777 Nonsense_Mutation p.C808* 0.25 TCGA-D3-A1Q1-06 7 150752177 150752177 G C CDK5 Missense_Mutation p.A196G 0.21 deleterious(0.05) benign(0.392) TCGA-D3-A1Q1-06 7 37924779 37924779 A G NME8 Missense_Mutation p.D391G 0.19 deleterious(0.04) possibly_damaging(0.507) TCGA-D3-A1Q1-06 7 72685598 72685598 T C GTF2IRD2P1 RNA 0.18 TCGA-D3-A1Q1-06 7 92762797 92762797 C T SAMD9L Missense_Mutation p.E830K 0.16 tolerated(0.08) benign(0.03) TCGA-D3-A1Q1-06 7 98609882 98609882 C T TRRAP Silent p.F3828F 0.16 TCGA-D3-A1Q1-06 8 105360773 105360773 C T DCSTAMP 5'UTR 0.08 TCGA-D3-A1Q1-06 8 144332324 144332324 G A ZFP41 Missense_Mutation p.R104H 0.09 tolerated(0.06) benign(0.031) TCGA-D3-A1Q1-06 8 19822852 19822852 C T LPL 3'UTR 0.38 TCGA-D3-A1Q1-06 8 53077718 53077718 G T ST18 Missense_Mutation p.N424K 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A1Q1-06 8 67372548 67372548 G A ADHFE1 Missense_Mutation p.D390N 0.10 tolerated(0.05) benign(0.066) TCGA-D3-A1Q1-06 8 69552608 69552608 C G C8orf34 Intron 0.10 TCGA-D3-A1Q1-06 8 77767823 77767823 C G ZFHX4 Missense_Mutation p.T2889R 0.10 probably_damaging(0.929) TCGA-D3-A1Q1-06 8 99441459 99441459 C T KCNS2 Missense_Mutation p.R418W 0.11 deleterious(0) possibly_damaging(0.644) TCGA-D3-A1Q1-06 X 53438820 53438820 G C SMC1A Missense_Mutation p.A382G 0.82 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A1Q1-06 X 55172516 55172516 A T FAM104B 3'UTR 0.59 TCGA-D3-A1Q3-06 10 26790050 26790050 T C APBB1IP Intron 0.36 TCGA-D3-A1Q3-06 10 34759192 34759192 C T PARD3 Splice_Site p.X135_splice 0.27 TCGA-D3-A1Q3-06 10 78943241 78943241 A G KCNMA1 Missense_Mutation p.V249A 0.21 deleterious(0) benign(0.131) TCGA-D3-A1Q3-06 10 97779112 97779112 A C CC2D2B Intron 0.23 TCGA-D3-A1Q3-06 11 64564363 64564363 C A MAP4K2 Missense_Mutation p.M470I 0.15 deleterious(0.01) benign(0.23) TCGA-D3-A1Q3-06 11 93796824 93796824 A G HEPHL1 Missense_Mutation p.H189R 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1Q3-06 12 102512168 102512168 A G NUP37 Silent p.Y43Y 0.18 TCGA-D3-A1Q3-06 13 29005390 29005390 T G FLT1 Missense_Mutation p.I291L 0.42 tolerated(0.71) benign(0.002) TCGA-D3-A1Q3-06 13 47365541 47365541 A G ESD Missense_Mutation p.L3S 0.34 deleterious(0) possibly_damaging(0.456) TCGA-D3-A1Q3-06 13 61986652 61986652 T A PCDH20 Missense_Mutation p.D527V 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A1Q3-06 14 50844944 50844944 G C CDKL1 Intron 0.09 TCGA-D3-A1Q3-06 15 57913897 57913897 C G MYZAP Nonsense_Mutation p.S137* 0.09 TCGA-D3-A1Q3-06 16 49407922 49407922 A C C16orf78 Missense_Mutation p.E24D 0.22 tolerated(0.06) probably_damaging(0.978) TCGA-D3-A1Q3-06 17 10408756 10408756 G A MYH1 Silent p.L749L 0.31 TCGA-D3-A1Q3-06 17 13399557 13399557 T G HS3ST3A1 Missense_Mutation p.K393T 0.21 deleterious(0) possibly_damaging(0.888) TCGA-D3-A1Q3-06 17 26901545 26901545 G A ALDOC Silent p.H197H 0.35 TCGA-D3-A1Q3-06 17 48157685 48157685 C T ITGA3 Silent p.P922P 0.71 TCGA-D3-A1Q3-06 17 67251966 67251966 A G ABCA5 Missense_Mutation p.L1295S 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q3-06 17 9515650 9515650 C G WDR16 Missense_Mutation p.I293M 0.27 deleterious(0.03) benign(0.091) TCGA-D3-A1Q3-06 18 11852107 11852107 G A CHMP1B Silent p.V199V 0.36 TCGA-D3-A1Q3-06 18 2760728 2760728 C T SMCHD1 Silent p.N1475N 0.19 TCGA-D3-A1Q3-06 19 4548389 4548389 A G SEMA6B Missense_Mutation p.L447P 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A1Q3-06 19 57666738 57666738 A T DUXA Silent p.I147I 0.17 TCGA-D3-A1Q3-06 19 57840683 57840683 A G ZNF543 3'UTR 0.32 TCGA-D3-A1Q3-06 1 10292487 10292487 C T KIF1B Missense_Mutation p.S34L 0.09 deleterious(0.01) benign(0.077) TCGA-D3-A1Q3-06 1 109735314 109735314 C T KIAA1324 Missense_Mutation p.R589C 0.28 deleterious(0) probably_damaging(0.919) TCGA-D3-A1Q3-06 1 113464617 113464617 A T SLC16A1 Missense_Mutation p.I119N 0.22 deleterious(0) probably_damaging(0.98) TCGA-D3-A1Q3-06 1 161494813 161494813 C T HSPA6 Missense_Mutation p.S122L 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A1Q3-06 1 179631268 179631268 G T TDRD5 Silent p.L784L 0.28 TCGA-D3-A1Q3-06 1 200869294 200869294 T A C1orf106 Silent p.V81V 0.47 TCGA-D3-A1Q3-06 1 205588103 205588103 A G ELK4 Silent p.G393G 0.22 TCGA-D3-A1Q3-06 1 247019110 247019111 AC - AHCTF1 Frame_Shift_Del p.K1434Nfs*14 0.26 TCGA-D3-A1Q3-06 20 20483995 20483995 C T RALGAPA2 Silent p.K1736K 0.41 TCGA-D3-A1Q3-06 21 10934960 10934960 T C TPTE Missense_Mutation p.H278R 0.10 deleterious(0.03) possibly_damaging(0.665) TCGA-D3-A1Q3-06 22 20721019 20721019 C T USP41 Silent p.L243L 0.52 TCGA-D3-A1Q3-06 22 21080785 21080785 C T PI4KA Silent p.R1662R 0.15 TCGA-D3-A1Q3-06 2 179444197 179444197 A G TTN Intron 0.25 TCGA-D3-A1Q3-06 2 187511592 187511592 A T ITGAV Missense_Mutation p.N447Y 0.36 deleterious(0) benign(0.275) TCGA-D3-A1Q3-06 2 189904255 189904255 G - COL5A2 Frame_Shift_Del p.P1223Rfs*50 0.08 TCGA-D3-A1Q3-06 3 114058118 114058118 G A ZBTB20 Missense_Mutation p.R654C 0.33 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q3-06 3 155210598 155210598 T G PLCH1 Missense_Mutation p.K731Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q3-06 3 164906282 164906282 A - SLITRK3 Frame_Shift_Del p.P780Qfs*13 0.19 TCGA-D3-A1Q3-06 3 49693606 49693606 T C BSN Missense_Mutation p.L2206P 0.45 unknown(0) TCGA-D3-A1Q3-06 3 50106193 50106193 G A RBM6 Missense_Mutation p.R1005Q 0.28 deleterious(0.01) benign(0.011) TCGA-D3-A1Q3-06 4 126371456 126371456 T C FAT4 Silent p.S3095S 0.31 TCGA-D3-A1Q3-06 4 166916261 166916261 A G TLL1 Missense_Mutation p.H188R 0.34 deleterious(0.01) benign(0.116) TCGA-D3-A1Q3-06 4 171010883 171010883 G A AADAT 5'UTR 0.34 TCGA-D3-A1Q3-06 4 435871 435871 G C ZNF721 Missense_Mutation p.S795R 0.28 tolerated(0.49) benign(0.051) TCGA-D3-A1Q3-06 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.82 deleterious(0) probably_damaging(1) TCGA-D3-A1Q3-06 7 77973259 77973259 C T MAGI2 Missense_Mutation p.R415Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q3-06 8 42146202 42146203 CC A IKBKB Frame_Shift_Del p.R53Gfs*13 0.12 TCGA-D3-A1Q3-06 9 135273619 135273619 A G TTF1 Silent p.S562S 0.24 TCGA-D3-A1Q3-06 9 82321762 82321762 C G TLE4 Missense_Mutation p.S295C 0.35 deleterious(0) benign(0.027) TCGA-D3-A1Q3-06 X 84526177 84526177 A G ZNF711 Silent p.A543A 0.44 TCGA-D3-A1Q4-06 10 104591265 104591265 C T CYP17A1 Missense_Mutation p.E415K 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A1Q4-06 10 105800156 105800156 G T COL17A1 Missense_Mutation p.S905Y 0.34 probably_damaging(0.974) TCGA-D3-A1Q4-06 10 124043405 124043405 T C BTBD16 Silent p.N69N 0.31 TCGA-D3-A1Q4-06 10 48389649 48389649 C T RBP3 Missense_Mutation p.G410E 0.35 tolerated(1) benign(0.132) TCGA-D3-A1Q4-06 10 50121815 50121815 C T LRRC18 Missense_Mutation p.G129D 0.35 deleterious(0) possibly_damaging(0.459) TCGA-D3-A1Q4-06 10 54531368 54531368 G A MBL2 Missense_Mutation p.L10F 0.25 tolerated(0.06) unknown(0) TCGA-D3-A1Q4-06 10 71665557 71665557 C T COL13A1 Silent p.I310I 0.27 TCGA-D3-A1Q4-06 10 890981 890981 G A LARP4B Nonsense_Mutation p.Q149* 0.27 TCGA-D3-A1Q4-06 10 89711876 89711876 G A PTEN Missense_Mutation p.G165E 0.33 deleterious(0) probably_damaging(0.994) TCGA-D3-A1Q4-06 10 90526048 90526048 G A LIPN Missense_Mutation p.D150N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 10 97604314 97604314 T C ENTPD1 Silent p.G177G 0.31 TCGA-D3-A1Q4-06 11 101347111 101347111 C T TRPC6 Silent p.Q555Q 0.16 TCGA-D3-A1Q4-06 11 101833840 101833840 G A KIAA1377 Missense_Mutation p.D692N 0.22 tolerated(0.3) benign(0.081) TCGA-D3-A1Q4-06 11 102207729 102207729 C T BIRC3 Missense_Mutation p.P571S 0.24 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q4-06 11 102401358 102401358 C T MMP7 Missense_Mutation p.G25E 0.30 tolerated(0.82) benign(0.048) TCGA-D3-A1Q4-06 11 113860273 113860273 C T HTR3A Missense_Mutation p.R447W 0.31 deleterious(0) possibly_damaging(0.761) TCGA-D3-A1Q4-06 11 123811257 123811257 C T OR4D5 Silent p.L312L 0.19 TCGA-D3-A1Q4-06 11 124310859 124310859 C T OR8B8 Silent p.G41G 0.35 TCGA-D3-A1Q4-06 11 128709329 128709329 C T KCNJ1 Silent p.Q289Q 0.24 TCGA-D3-A1Q4-06 11 16838742 16838742 G A PLEKHA7 Silent p.L491L 0.22 TCGA-D3-A1Q4-06 11 2156627 2156627 A G IGF2 Missense_Mutation p.F99L 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A1Q4-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.08 TCGA-D3-A1Q4-06 11 49597787 49597787 C T RP11-707M1.1 RNA 0.46 TCGA-D3-A1Q4-06 11 49974628 49974628 C T OR4C13 Silent p.V218V 0.17 TCGA-D3-A1Q4-06 11 5291094 5291094 C T HBE1 Silent p.K9K 0.24 TCGA-D3-A1Q4-06 11 5443983 5443983 G A OR51Q1 Missense_Mutation p.D185N 0.30 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q4-06 11 58034422 58034422 C T OR10W1 Silent p.Q303Q 0.19 TCGA-D3-A1Q4-06 11 5862975 5862975 G A OR52E6 Silent p.I51I 0.26 TCGA-D3-A1Q4-06 11 62997014 62997014 C T SLC22A25 Silent p.L37L 0.16 TCGA-D3-A1Q4-06 11 64698931 64698931 C T PPP2R5B Silent p.F305F 0.12 TCGA-D3-A1Q4-06 11 68748441 68748441 C T MRGPRD Silent p.L5L 0.22 TCGA-D3-A1Q4-06 11 71260045 71260045 C T KRTAP5-9 Silent p.P114P 0.23 TCGA-D3-A1Q4-06 11 78399181 78399181 G A TENM4 Silent p.V1726V 0.26 TCGA-D3-A1Q4-06 11 82880555 82880555 G T PCF11 Missense_Mutation p.G1060C 0.26 deleterious(0.04) probably_damaging(0.99) TCGA-D3-A1Q4-06 11 92087984 92087984 G A FAT3 Silent p.L902L 0.26 TCGA-D3-A1Q4-06 12 101520699 101520699 C T ANO4 Missense_Mutation p.P872S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 12 102295101 102295101 G A DRAM1 Missense_Mutation p.V78I 0.37 tolerated(0.2) benign(0.118) TCGA-D3-A1Q4-06 12 110029043 110029043 C A MVK Intron 0.24 TCGA-D3-A1Q4-06 12 111319097 111319097 G A CCDC63 Missense_Mutation p.E284K 0.15 tolerated(0.55) benign(0.133) TCGA-D3-A1Q4-06 12 118588821 118588821 G A TAOK3 Missense_Mutation p.P893L 0.24 tolerated_low_confidence(0.1) benign(0.005) TCGA-D3-A1Q4-06 12 118588822 118588822 G A TAOK3 Missense_Mutation p.P893S 0.24 tolerated_low_confidence(0.73) benign(0.004) TCGA-D3-A1Q4-06 12 120135790 120135790 G A CIT Missense_Mutation p.S1898F 0.27 deleterious(0) benign(0.409) TCGA-D3-A1Q4-06 12 132329987 132329987 C T MMP17 Silent p.F399F 0.17 TCGA-D3-A1Q4-06 12 48132517 48132517 C T RAPGEF3 Missense_Mutation p.G828R 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A1Q4-06 12 53072496 53072496 C T KRT1 Nonsense_Mutation p.W212* 0.19 TCGA-D3-A1Q4-06 12 53291219 53291219 G A KRT8 Missense_Mutation p.P510L 0.23 deleterious_low_confidence(0.01) benign(0.082) TCGA-D3-A1Q4-06 12 53818965 53818965 G A AMHR2 Missense_Mutation p.M147I 0.28 tolerated(0.94) benign(0) TCGA-D3-A1Q4-06 12 53861171 53861171 C T PCBP2 Intron 0.21 TCGA-D3-A1Q4-06 12 54799034 54799034 G A ITGA5 Missense_Mutation p.L381F 0.22 tolerated(0.24) benign(0.004) TCGA-D3-A1Q4-06 12 55641155 55641155 C T OR6C74 Silent p.L28L 0.20 TCGA-D3-A1Q4-06 12 55863458 55863458 G A OR6C70 Silent p.F155F 0.27 TCGA-D3-A1Q4-06 12 62147424 62147424 C T FAM19A2 Silent p.G121G 0.28 TCGA-D3-A1Q4-06 12 69652823 69652823 C T CPSF6 Missense_Mutation p.P383L 0.29 tolerated(0.61) probably_damaging(0.981) TCGA-D3-A1Q4-06 12 70724190 70724190 G A CNOT2 Silent p.S170S 0.12 TCGA-D3-A1Q4-06 12 78401099 78401099 C T NAV3 Missense_Mutation p.S594F 0.28 deleterious(0.04) benign(0.311) TCGA-D3-A1Q4-06 12 81747054 81747054 G A PPFIA2 Missense_Mutation p.P613L 0.25 tolerated(0.21) benign(0.02) TCGA-D3-A1Q4-06 12 92814813 92814813 C T CLLU1OS Silent p.G93G 0.22 TCGA-D3-A1Q4-06 12 96131685 96131685 G A NTN4 Missense_Mutation p.H275Y 0.33 tolerated(0.06) benign(0.028) TCGA-D3-A1Q4-06 12 96311023 96311023 G A CCDC38 Missense_Mutation p.S63L 0.17 deleterious(0) probably_damaging(0.962) TCGA-D3-A1Q4-06 13 22275499 22275499 C T FGF9 Silent p.F184F 0.35 TCGA-D3-A1Q4-06 14 102718264 102718264 G A MOK Missense_Mutation p.H118Y 0.28 tolerated(0.28) possibly_damaging(0.791) TCGA-D3-A1Q4-06 14 106926642 106926642 C T IGHV3-43 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0.01) benign(0.308) TCGA-D3-A1Q4-06 14 107131433 107131433 C T IGHV3-66 Intron 0.27 TCGA-D3-A1Q4-06 14 20296402 20296402 C T OR4N2 Silent p.F265F 0.45 TCGA-D3-A1Q4-06 14 22102844 22102844 G A OR10G2 Missense_Mutation p.T52I 0.37 deleterious(0.02) benign(0.189) TCGA-D3-A1Q4-06 14 24884614 24884614 C T NYNRIN Missense_Mutation p.S1220F 0.38 deleterious(0) possibly_damaging(0.83) TCGA-D3-A1Q4-06 14 33291332 33291332 G A AKAP6 Missense_Mutation p.G1438E 0.30 tolerated_low_confidence(0.22) benign(0.037) TCGA-D3-A1Q4-06 14 37145435 37145435 T A PAX9 Missense_Mutation p.F268L 0.40 deleterious_low_confidence(0.01) benign(0.079) TCGA-D3-A1Q4-06 14 37145436 37145436 G A PAX9 Missense_Mutation p.V269M 0.41 deleterious_low_confidence(0) benign(0.28) TCGA-D3-A1Q4-06 14 65208364 65208364 C T PLEKHG3 Missense_Mutation p.S654F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 14 73566427 73566427 G A RBM25 Missense_Mutation p.R279Q 0.35 probably_damaging(0.989) TCGA-D3-A1Q4-06 14 90651308 90651308 C T KCNK13 Silent p.I396I 0.27 TCGA-D3-A1Q4-06 14 96129881 96129881 C T TCL6 RNA 0.20 TCGA-D3-A1Q4-06 15 41149185 41149185 A C SPINT1 3'UTR 0.25 TCGA-D3-A1Q4-06 15 57925811 57925811 G A GCOM1 Missense_Mutation p.E269K 0.23 tolerated(0.17) possibly_damaging(0.476) TCGA-D3-A1Q4-06 15 58889714 58889714 G A ADAM10 3'UTR 0.15 TCGA-D3-A1Q4-06 15 65968786 65968786 C T DENND4A Missense_Mutation p.E1455K 0.27 tolerated(0.88) benign(0.045) TCGA-D3-A1Q4-06 15 75119170 75119170 G A CPLX3 Silent p.E42E 0.19 TCGA-D3-A1Q4-06 15 75500361 75500361 C T C15orf39 Missense_Mutation p.R658C 0.25 deleterious(0) benign(0.003) TCGA-D3-A1Q4-06 15 76452494 76452494 C T C15orf27 Silent p.S147S 0.24 TCGA-D3-A1Q4-06 15 81212554 81212554 C T KIAA1199 Silent p.L639L 0.18 TCGA-D3-A1Q4-06 15 82335468 82335468 C A MEX3B 3'UTR 0.35 TCGA-D3-A1Q4-06 15 84257443 84257443 G A SH3GL3 Missense_Mutation p.R253Q 0.20 tolerated(0.29) benign(0.003) TCGA-D3-A1Q4-06 15 89402228 89402228 G A ACAN Missense_Mutation p.E2138K 0.27 deleterious(0.03) benign(0.081) TCGA-D3-A1Q4-06 15 97328415 97328415 G A SPATA8 3'UTR 0.27 TCGA-D3-A1Q4-06 16 11272268 11272269 CT - CLEC16A Frame_Shift_Del p.S962* 0.24 TCGA-D3-A1Q4-06 16 23364127 23364127 C T SCNN1B Missense_Mutation p.S106F 0.35 deleterious(0) probably_damaging(0.982) TCGA-D3-A1Q4-06 16 5061172 5061172 G A SEC14L5 Missense_Mutation p.C626Y 0.50 tolerated(0.54) possibly_damaging(0.73) TCGA-D3-A1Q4-06 16 72094728 72094728 G A HP Missense_Mutation p.G387D 0.26 deleterious(0) probably_damaging(0.991) TCGA-D3-A1Q4-06 16 72110817 72110817 G A HPR Missense_Mutation p.G295D 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 16 74927577 74927577 A C WDR59 Missense_Mutation p.I667R 0.31 deleterious(0) benign(0.132) TCGA-D3-A1Q4-06 16 7714947 7714947 G A RBFOX1 Intron 0.22 TCGA-D3-A1Q4-06 16 90001825 90001825 C T TUBB3 Silent p.S322S 0.29 TCGA-D3-A1Q4-06 17 10299903 10299903 C T MYH8 Missense_Mutation p.E1499K 0.23 deleterious(0) possibly_damaging(0.904) TCGA-D3-A1Q4-06 17 10362600 10362600 C T MYH4 Missense_Mutation p.D519N 0.20 deleterious(0.01) possibly_damaging(0.64) TCGA-D3-A1Q4-06 17 10440988 10440988 G A MYH2 Silent p.I527I 0.24 TCGA-D3-A1Q4-06 17 11556228 11556228 C T DNAH9 Missense_Mutation p.S835F 0.17 benign(0.001) TCGA-D3-A1Q4-06 17 12626201 12626201 G A AC005358.1 Translation_Start_Site p.M1? 0.21 deleterious(0.05) benign(0.16) TCGA-D3-A1Q4-06 17 12639507 12639507 G A MYOCD Missense_Mutation p.D149N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q4-06 17 16664987 16664987 G A CCDC144A Silent p.R1207R 0.12 TCGA-D3-A1Q4-06 17 2996197 2996197 G A OR1D2 Silent p.L32L 0.35 TCGA-D3-A1Q4-06 17 38324121 38324122 TC A CASC3 Frame_Shift_Del p.I557Nfs*22 0.18 TCGA-D3-A1Q4-06 17 48356327 48356327 C T TMEM92 Silent p.S112S 0.14 TCGA-D3-A1Q4-06 17 5009481 5009481 G A ZNF232 Missense_Mutation p.H325Y 0.28 tolerated(0.06) benign(0.25) TCGA-D3-A1Q4-06 17 56326423 56326423 C T LPO Missense_Mutation p.P110S 0.18 tolerated(0.49) benign(0.007) TCGA-D3-A1Q4-06 17 56787259 56787259 C T RAD51C Missense_Mutation p.R249C 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q4-06 17 58235079 58235079 G A CA4 Missense_Mutation p.G148E 0.15 tolerated(0.29) benign(0.071) TCGA-D3-A1Q4-06 17 60484004 60484004 G A EFCAB3 Missense_Mutation p.D270N 0.16 deleterious(0.02) possibly_damaging(0.818) TCGA-D3-A1Q4-06 17 61555443 61555443 T C ACE Missense_Mutation p.L134P 0.31 tolerated(0.28) benign(0.005) TCGA-D3-A1Q4-06 17 61571304 61571304 T C ACE Missense_Mutation p.M1053T 0.26 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q4-06 17 61730009 61730009 A G MAP3K3 Missense_Mutation p.N118S 0.20 tolerated(0.07) probably_damaging(0.947) TCGA-D3-A1Q4-06 17 6978561 6978561 G A CLEC10A Intron 0.31 TCGA-D3-A1Q4-06 17 7096426 7096426 C T DLG4 Silent p.R611R 0.20 TCGA-D3-A1Q4-06 17 72256272 72256272 C T TTYH2 Missense_Mutation p.S510F 0.23 deleterious(0) possibly_damaging(0.897) TCGA-D3-A1Q4-06 17 74273322 74273322 G T QRICH2 Silent p.T1563T 0.18 TCGA-D3-A1Q4-06 17 80915071 80915071 G A B3GNTL1 Missense_Mutation p.H306Y 0.42 tolerated(1) benign(0.001) TCGA-D3-A1Q4-06 18 18586524 18586524 G T ROCK1 Nonsense_Mutation p.S558* 0.23 TCGA-D3-A1Q4-06 18 28725676 28725676 C T DSC1 Silent p.L279L 0.24 TCGA-D3-A1Q4-06 18 28906969 28906969 G A DSG1 Splice_Site p.X72_splice 0.18 TCGA-D3-A1Q4-06 18 72998240 72998240 C T TSHZ1 Missense_Mutation p.S248F 0.36 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q4-06 18 72998241 72998241 C T TSHZ1 Silent p.S248S 0.34 TCGA-D3-A1Q4-06 19 12780554 12780554 G A WDR83 Intron 0.18 TCGA-D3-A1Q4-06 19 1487004 1487004 C T PCSK4 Missense_Mutation p.D306N 0.25 deleterious(0) probably_damaging(0.989) TCGA-D3-A1Q4-06 19 15794562 15794562 C T CYP4F12 Silent p.L303L 0.22 TCGA-D3-A1Q4-06 19 15852388 15852388 C T OR10H3 Silent p.L62L 0.19 TCGA-D3-A1Q4-06 19 17088240 17088240 C T CPAMD8 Missense_Mutation p.E613K 0.24 tolerated(0.08) possibly_damaging(0.823) TCGA-D3-A1Q4-06 19 17463137 17463137 G A PLVAP 3'UTR 0.17 TCGA-D3-A1Q4-06 19 17463138 17463138 G A PLVAP 3'UTR 0.17 TCGA-D3-A1Q4-06 19 18648543 18648543 C T FKBP8 Silent p.L271L 0.24 TCGA-D3-A1Q4-06 19 22155388 22155388 C A ZNF208 Missense_Mutation p.K816N 0.11 tolerated(0.41) unknown(0) TCGA-D3-A1Q4-06 19 22156029 22156029 G A ZNF208 Missense_Mutation p.H603Y 0.28 deleterious(0) possibly_damaging(0.567) TCGA-D3-A1Q4-06 19 22362910 22362910 C T ZNF676 Missense_Mutation p.E537K 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-D3-A1Q4-06 19 36365501 36365501 C T APLP1 Silent p.I384I 0.23 TCGA-D3-A1Q4-06 19 37037968 37037968 T G ZNF529 Silent p.R498R 0.23 TCGA-D3-A1Q4-06 19 40411742 40411742 C T FCGBP Missense_Mutation p.E1296K 0.21 probably_damaging(0.999) TCGA-D3-A1Q4-06 19 4048123 4048123 G A ZBTB7A Missense_Mutation p.T461M 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q4-06 19 40901099 40901099 C T PRX Missense_Mutation p.G1054R 0.25 deleterious(0.03) probably_damaging(0.979) TCGA-D3-A1Q4-06 19 4318373 4318373 C T FSD1 Missense_Mutation p.S277F 0.21 deleterious(0) possibly_damaging(0.529) TCGA-D3-A1Q4-06 19 44511213 44511213 C T ZNF230 5'UTR 0.26 TCGA-D3-A1Q4-06 19 46355638 46355638 G A SYMPK Silent p.I77I 0.31 TCGA-D3-A1Q4-06 19 51379954 51379954 G A KLK2 Missense_Mutation p.E145K 0.39 tolerated(0.28) probably_damaging(0.977) TCGA-D3-A1Q4-06 19 54234338 54234338 T G MIR518A1 RNA 0.18 TCGA-D3-A1Q4-06 19 54254479 54254479 C T MIR522 RNA 0.40 TCGA-D3-A1Q4-06 19 54261547 54261547 C T MIR1283-2 RNA 0.16 TCGA-D3-A1Q4-06 19 55331168 55331168 G A KIR3DL1 Missense_Mutation p.G119E 0.26 deleterious(0) probably_damaging(0.943) TCGA-D3-A1Q4-06 19 55401052 55401052 C T FCAR Silent p.I229I 0.17 TCGA-D3-A1Q4-06 19 55715188 55715188 C T PTPRH Missense_Mutation p.G283E 0.22 unknown(0) TCGA-D3-A1Q4-06 19 55716753 55716753 G A PTPRH Missense_Mutation p.S187F 0.23 unknown(0) TCGA-D3-A1Q4-06 19 56443602 56443602 G A NLRP13 Nonsense_Mutation p.Q26* 0.24 TCGA-D3-A1Q4-06 19 58437835 58437835 C G ZNF418 Missense_Mutation p.G572R 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A1Q4-06 19 6467856 6467856 C T DENND1C Missense_Mutation p.A689T 0.17 tolerated_low_confidence(0.14) benign(0.012) TCGA-D3-A1Q4-06 19 9061148 9061148 G A MUC16 Silent p.S8766S 0.28 TCGA-D3-A1Q4-06 19 9068008 9068008 C T MUC16 Missense_Mutation p.G6480R 0.26 unknown(0) TCGA-D3-A1Q4-06 19 9069754 9069754 G A MUC16 Missense_Mutation p.P5898S 0.25 unknown(0) TCGA-D3-A1Q4-06 1 110765869 110765869 C T KCNC4 Missense_Mutation p.A321V 0.24 deleterious(0) probably_damaging(0.975) TCGA-D3-A1Q4-06 1 147091450 147091450 C T BCL9 Missense_Mutation p.L497F 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A1Q4-06 1 147380868 147380868 A C GJA8 Missense_Mutation p.K262N 0.13 deleterious(0.02) probably_damaging(0.984) TCGA-D3-A1Q4-06 1 151958577 151958577 C T S100A10 Missense_Mutation p.E44K 0.10 tolerated(0.43) benign(0.262) TCGA-D3-A1Q4-06 1 151958578 151958578 C T S100A10 Silent p.L43L 0.12 TCGA-D3-A1Q4-06 1 156501015 156501015 G A IQGAP3 Silent p.I1376I 0.16 TCGA-D3-A1Q4-06 1 159163260 159163260 G A CADM3 Missense_Mutation p.E178K 0.28 deleterious(0) possibly_damaging(0.669) TCGA-D3-A1Q4-06 1 163117255 163117255 C T RGS5 Silent p.K145K 0.18 TCGA-D3-A1Q4-06 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.24 tolerated(0.12) benign(0.376) TCGA-D3-A1Q4-06 1 175334205 175334205 T C TNR Missense_Mutation p.N843S 0.23 tolerated(1) benign(0.01) TCGA-D3-A1Q4-06 1 176640113 176640113 A G PAPPA2 Missense_Mutation p.M667V 0.25 deleterious(0.02) benign(0.188) TCGA-D3-A1Q4-06 1 181762858 181762858 C T CACNA1E Missense_Mutation p.P1986S 0.33 tolerated(0.05) benign(0.035) TCGA-D3-A1Q4-06 1 186901934 186901934 C T PLA2G4A Nonsense_Mutation p.R200* 0.23 TCGA-D3-A1Q4-06 1 18703297 18703297 G A IGSF21 Missense_Mutation p.E369K 0.44 tolerated(0.05) possibly_damaging(0.857) TCGA-D3-A1Q4-06 1 19180943 19180943 A C TAS1R2 Missense_Mutation p.W341G 0.25 tolerated(0.13) benign(0.004) TCGA-D3-A1Q4-06 1 201195139 201195139 C T IGFN1 Silent p.L3558L 0.22 TCGA-D3-A1Q4-06 1 203456010 203456010 G A PRELP 3'UTR 0.43 TCGA-D3-A1Q4-06 1 215298016 215298016 G A KCNK2 Missense_Mutation p.G133E 0.28 deleterious(0.04) benign(0.08) TCGA-D3-A1Q4-06 1 223116276 223116276 C A DISP1 Silent p.A37A 0.04 TCGA-D3-A1Q4-06 1 231830097 231830097 C T DISC1 Missense_Mutation p.T198I 0.25 tolerated(0.11) benign(0.049) TCGA-D3-A1Q4-06 1 231830098 231830098 C T DISC1 Silent p.T198T 0.24 TCGA-D3-A1Q4-06 1 235543451 235543451 C T TBCE Silent p.V29V 0.36 TCGA-D3-A1Q4-06 1 247875287 247875287 G A OR6F1 Silent p.F257F 0.29 TCGA-D3-A1Q4-06 1 33625297 33625297 C G TRIM62 Silent p.L251L 0.20 TCGA-D3-A1Q4-06 1 39549971 39549971 G A MACF1 Silent p.R27R 0.22 TCGA-D3-A1Q4-06 1 55161093 55161093 A G MROH7 Missense_Mutation p.Y965C 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q4-06 1 67194951 67194951 A T SGIP1 Missense_Mutation p.I583F 0.29 deleterious(0.01) benign(0.179) TCGA-D3-A1Q4-06 1 74507410 74507410 C T LRRIQ3 Missense_Mutation p.R402Q 0.28 tolerated(0.18) benign(0.325) TCGA-D3-A1Q4-06 1 91816303 91816303 G A HFM1 Missense_Mutation p.S733F 0.30 deleterious(0) benign(0.401) TCGA-D3-A1Q4-06 20 210417 210417 G A DEFB129 3'UTR 0.31 TCGA-D3-A1Q4-06 20 2297783 2297783 C T TGM3 Missense_Mutation p.P247S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 20 2380983 2380983 C T TGM6 Silent p.V294V 0.36 TCGA-D3-A1Q4-06 20 2795779 2795779 C T C20orf141 5'UTR 0.16 TCGA-D3-A1Q4-06 20 39792045 39792045 G A PLCG1 Missense_Mutation p.V273M 0.21 deleterious(0.04) possibly_damaging(0.612) TCGA-D3-A1Q4-06 20 7895041 7895041 C T HAO1 Missense_Mutation p.M105I 0.26 deleterious(0.01) possibly_damaging(0.786) TCGA-D3-A1Q4-06 21 42080489 42080489 G A DSCAM Silent p.F84F 0.27 TCGA-D3-A1Q4-06 21 45959675 45959675 G A KRTAP10-1 Missense_Mutation p.S120L 0.22 tolerated(0.09) unknown(0) TCGA-D3-A1Q4-06 21 46032843 46032843 C T KRTAP10-8 3'UTR 0.26 TCGA-D3-A1Q4-06 22 22869886 22869886 C T ZNF280A Silent p.R23R 0.18 TCGA-D3-A1Q4-06 22 26168458 26168458 C T MYO18B Missense_Mutation p.S617L 0.16 tolerated(0.67) benign(0.005) TCGA-D3-A1Q4-06 22 31011344 31011344 C T TCN2 Missense_Mutation p.P213S 0.22 tolerated(0.08) benign(0.046) TCGA-D3-A1Q4-06 22 38119627 38119627 G A TRIOBP Missense_Mutation p.R355K 0.23 tolerated_low_confidence(0.05) benign(0.256) TCGA-D3-A1Q4-06 22 39135782 39135782 G A SUN2 Missense_Mutation p.A529V 0.26 tolerated(0.35) benign(0.008) TCGA-D3-A1Q4-06 22 40819558 40819558 G A MKL1 Silent p.S203S 0.26 TCGA-D3-A1Q4-06 22 42905114 42905114 C G RRP7A 3'Flank 0.15 TCGA-D3-A1Q4-06 22 45691614 45691614 C T UPK3A 3'UTR 0.35 TCGA-D3-A1Q4-06 22 50277928 50277928 C G ZBED4 Missense_Mutation p.I206M 0.30 tolerated(0.19) benign(0.143) TCGA-D3-A1Q4-06 22 50722087 50722087 G A PLXNB2 Silent p.I838I 0.22 TCGA-D3-A1Q4-06 22 50869685 50869685 C T PPP6R2 Silent p.A404A 0.32 TCGA-D3-A1Q4-06 22 50869686 50869686 C T PPP6R2 Missense_Mutation p.R405C 0.35 tolerated(0.19) possibly_damaging(0.764) TCGA-D3-A1Q4-06 22 51208364 51208364 G A RABL2B Silent p.I126I 0.26 TCGA-D3-A1Q4-06 2 107459793 107459793 G A ST6GAL2 Missense_Mutation p.S214F 0.29 possibly_damaging(0.482) TCGA-D3-A1Q4-06 2 11426678 11426678 C A ROCK2 Missense_Mutation p.G104V 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q4-06 2 136873378 136873378 G A CXCR4 Silent p.F44F 0.33 TCGA-D3-A1Q4-06 2 138413086 138413086 G A THSD7B Missense_Mutation p.E1324K 0.32 deleterious(0.02) unknown(0) TCGA-D3-A1Q4-06 2 141739753 141739753 G T LRP1B Missense_Mutation p.Q955K 0.15 benign(0.001) TCGA-D3-A1Q4-06 2 154800947 154800947 G A GALNT13 5'UTR 0.24 TCGA-D3-A1Q4-06 2 165987886 165987886 G A SCN3A Silent p.I811I 0.27 TCGA-D3-A1Q4-06 2 166848050 166848050 C T SCN1A Missense_Mutation p.R1912Q 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A1Q4-06 2 171715347 171715347 C T GAD1 Missense_Mutation p.P519S 0.18 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q4-06 2 17698712 17698712 G A RAD51AP2 Missense_Mutation p.S324F 0.30 deleterious(0.05) benign(0.04) TCGA-D3-A1Q4-06 2 179396030 179396030 C T TTN Missense_Mutation p.M35104I 0.25 TCGA-D3-A1Q4-06 2 179457686 179457686 C T TTN Silent p.Q19720Q 0.24 TCGA-D3-A1Q4-06 2 179528362 179528362 G A TTN Missense_Mutation p.P12175L 0.27 TCGA-D3-A1Q4-06 2 179584174 179584174 C T TTN Silent p.R7981R 0.23 TCGA-D3-A1Q4-06 2 179588856 179588856 G A TTN Missense_Mutation p.P7044S 0.35 TCGA-D3-A1Q4-06 2 182780777 182780777 C T SSFA2 Missense_Mutation p.P804S 0.29 tolerated(0.08) benign(0.043) TCGA-D3-A1Q4-06 2 206608069 206608069 C T NRP2 Silent p.I478I 0.24 TCGA-D3-A1Q4-06 2 21235442 21235442 G A APOB Missense_Mutation p.S1433L 0.22 probably_damaging(0.992) TCGA-D3-A1Q4-06 2 212568876 212568876 G A ERBB4 Silent p.F414F 0.27 TCGA-D3-A1Q4-06 2 215854087 215854087 G A ABCA12 Silent p.F1265F 0.17 TCGA-D3-A1Q4-06 2 219305465 219305465 G A VIL1 Silent p.V750V 0.31 TCGA-D3-A1Q4-06 2 228118856 228118856 G A COL4A3 Missense_Mutation p.G265E 0.22 probably_damaging(1) TCGA-D3-A1Q4-06 2 234217825 234217825 G A SAG 5'UTR 0.27 TCGA-D3-A1Q4-06 2 241078557 241078557 G A OTOS 3'UTR 0.24 TCGA-D3-A1Q4-06 2 241078558 241078558 G A OTOS 3'UTR 0.24 TCGA-D3-A1Q4-06 2 27552143 27552143 G A GTF3C2 Silent p.F628F 0.26 TCGA-D3-A1Q4-06 2 27610020 27610020 A G PPM1G Silent p.A42A 0.12 TCGA-D3-A1Q4-06 2 27801614 27801614 G A C2orf16 Silent p.G725G 0.24 TCGA-D3-A1Q4-06 2 44065633 44065633 C T ABCG5 Intron 0.27 TCGA-D3-A1Q4-06 2 73316089 73316092 GCTG - RAB11FIP5 Frame_Shift_Del p.S262Gfs*144 0.24 TCGA-D3-A1Q4-06 2 73316099 73316099 G A RAB11FIP5 Missense_Mutation p.S259F 0.27 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q4-06 2 79312666 79312666 G A REG1B Missense_Mutation p.P129S 0.21 tolerated(0.68) possibly_damaging(0.644) TCGA-D3-A1Q4-06 2 90121708 90121708 C T IGKV1D-17 Silent p.F17F 0.18 TCGA-D3-A1Q4-06 2 95515008 95515008 C T RNU6-1320P 5'Flank 0.18 TCGA-D3-A1Q4-06 2 98810890 98810890 G A VWA3B Missense_Mutation p.E558K 0.25 tolerated(0.06) benign(0.168) TCGA-D3-A1Q4-06 3 113658823 113658823 C T GRAMD1C Silent p.L594L 0.36 TCGA-D3-A1Q4-06 3 113775403 113775403 C T KIAA1407 5'UTR 0.24 TCGA-D3-A1Q4-06 3 120957823 120957823 C T STXBP5L Missense_Mutation p.P397L 0.21 deleterious(0.05) probably_damaging(1) TCGA-D3-A1Q4-06 3 121100318 121100318 C T STXBP5L Silent p.S866S 0.19 TCGA-D3-A1Q4-06 3 121342139 121342139 G A FBXO40 Nonsense_Mutation p.W621* 0.21 TCGA-D3-A1Q4-06 3 12458329 12458329 C T PPARG Missense_Mutation p.R316C 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A1Q4-06 3 132165331 132165331 C T DNAJC13 Silent p.V27V 0.28 TCGA-D3-A1Q4-06 3 169099072 169099072 C T MECOM Missense_Mutation p.G117E 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 3 191178959 191178959 C A PYDC2 Missense_Mutation p.S3Y 0.23 tolerated(0.07) probably_damaging(0.931) TCGA-D3-A1Q4-06 3 194062482 194062482 G A CPN2 Missense_Mutation p.S317F 0.30 tolerated(0.2) benign(0.075) TCGA-D3-A1Q4-06 3 49899749 49899749 C T CAMKV Missense_Mutation p.D25N 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A1Q4-06 3 9991656 9991656 C T PRRT3 Silent p.K48K 0.22 TCGA-D3-A1Q4-06 4 115858653 115858653 C T NDST4 Missense_Mutation p.G410R 0.25 deleterious(0.04) benign(0.037) TCGA-D3-A1Q4-06 4 129043225 129043225 C T LARP1B Missense_Mutation p.T469I 0.28 deleterious(0) benign(0.017) TCGA-D3-A1Q4-06 4 155530802 155530802 C T FGG Missense_Mutation p.G216R 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 4 174089920 174089920 G A GALNT7 5'UTR 0.50 TCGA-D3-A1Q4-06 4 175897457 175897457 G A ADAM29 Missense_Mutation p.D261N 0.34 tolerated(0.31) benign(0.048) TCGA-D3-A1Q4-06 4 176594872 176594872 C T GPM6A Missense_Mutation p.D116N 0.21 deleterious(0.01) possibly_damaging(0.759) TCGA-D3-A1Q4-06 5 10415637 10415637 G A MARCH6 Silent p.G668G 0.25 TCGA-D3-A1Q4-06 5 13766132 13766132 C T DNAH5 Missense_Mutation p.E3352K 0.27 benign(0) TCGA-D3-A1Q4-06 5 13792187 13792187 G A DNAH5 Silent p.F2788F 0.32 TCGA-D3-A1Q4-06 5 140166099 140166099 T G PCDHA1 Missense_Mutation p.L75R 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A1Q4-06 5 140228284 140228284 C T PCDHA9 Silent p.S68S 0.22 TCGA-D3-A1Q4-06 5 140262123 140262123 C T PCDHA13 Silent p.I90I 0.18 TCGA-D3-A1Q4-06 5 140725195 140725195 T G PCDHGA3 Missense_Mutation p.V532G 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A1Q4-06 5 140767862 140767862 C T PCDHGB4 Silent p.S137S 0.28 TCGA-D3-A1Q4-06 5 145246117 145246117 C T GRXCR2 Missense_Mutation p.D171N 0.17 tolerated(0.31) benign(0.001) TCGA-D3-A1Q4-06 5 156469681 156469681 G A HAVCR1 Missense_Mutation p.T265I 0.22 deleterious(0) probably_damaging(0.934) TCGA-D3-A1Q4-06 5 156590260 156590260 T C FAM71B Missense_Mutation p.E339G 0.23 deleterious(0.04) benign(0.125) TCGA-D3-A1Q4-06 5 156590262 156590262 T A FAM71B Silent p.S338S 0.24 TCGA-D3-A1Q4-06 5 156899544 156899544 C T NIPAL4 Missense_Mutation p.P326L 0.29 tolerated(0.12) possibly_damaging(0.562) TCGA-D3-A1Q4-06 5 167882460 167882460 C T WWC1 Nonsense_Mutation p.R920* 0.26 TCGA-D3-A1Q4-06 5 37183400 37183400 G A C5orf42 Missense_Mutation p.S1628L 0.21 tolerated(0.08) benign(0.206) TCGA-D3-A1Q4-06 5 50685521 50685521 G A ISL1 Missense_Mutation p.V174I 0.30 tolerated(0.28) benign(0.034) TCGA-D3-A1Q4-06 5 70782429 70782429 C T BDP1 Silent p.S396S 0.26 TCGA-D3-A1Q4-06 5 79030721 79030721 G A CMYA5 Missense_Mutation p.E2045K 0.34 probably_damaging(0.956) TCGA-D3-A1Q4-06 5 92923685 92923685 G A NR2F1 Missense_Mutation p.G176R 0.27 tolerated(0.08) benign(0.03) TCGA-D3-A1Q4-06 6 100838200 100838201 CA - SIM1 3'UTR 0.20 TCGA-D3-A1Q4-06 6 110777798 110777798 G A SLC22A16 Missense_Mutation p.P159L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 6 112437103 112437103 T C LAMA4 Missense_Mutation p.N1692S 0.29 tolerated(0.22) benign(0.029) TCGA-D3-A1Q4-06 6 124604234 124604234 C T NKAIN2 Silent p.I46I 0.28 TCGA-D3-A1Q4-06 6 160230044 160230044 C T PNLDC1 Intron 0.29 TCGA-D3-A1Q4-06 6 26045867 26045867 C A HIST1H3C Missense_Mutation p.Q77K 0.20 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-D3-A1Q4-06 6 28333993 28333993 C T ZKSCAN3 Silent p.G516G 0.29 TCGA-D3-A1Q4-06 6 28543318 28543318 C T SCAND3 Silent p.G388G 0.20 TCGA-D3-A1Q4-06 6 31896656 31896656 G A CFB Intron 0.24 TCGA-D3-A1Q4-06 6 32163695 32163695 C G NOTCH4 Missense_Mutation p.R1844P 0.24 deleterious(0.01) possibly_damaging(0.766) TCGA-D3-A1Q4-06 6 33406690 33406690 C T SYNGAP1 Missense_Mutation p.S557F 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 6 34952961 34952961 C T ANKS1A Missense_Mutation p.S372L 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A1Q4-06 6 37631827 37631827 G T MDGA1 Missense_Mutation p.D41E 0.21 tolerated(1) possibly_damaging(0.873) TCGA-D3-A1Q4-06 6 3851100 3851100 C T FAM50B 3'UTR 0.20 TCGA-D3-A1Q4-06 6 38825334 38825334 C T DNAH8 Missense_Mutation p.S1708L 0.18 benign(0.24) TCGA-D3-A1Q4-06 6 45870870 45870870 G A CLIC5 Silent p.I396I 0.29 TCGA-D3-A1Q4-06 6 47576922 47576922 C T CD2AP Missense_Mutation p.P566S 0.31 tolerated(0.39) benign(0.007) TCGA-D3-A1Q4-06 6 49754580 49754580 G A PGK2 Silent p.A107A 0.31 TCGA-D3-A1Q4-06 6 73904753 73904753 G A KCNQ5 Silent p.R824R 0.19 TCGA-D3-A1Q4-06 6 83838630 83838630 C T DOPEY1 Missense_Mutation p.P582S 0.30 tolerated(0.22) benign(0.001) TCGA-D3-A1Q4-06 7 100189321 100189321 A T FBXO24 Silent p.G156G 0.29 TCGA-D3-A1Q4-06 7 100549633 100549633 G A MUC3A Missense_Mutation p.E72K 0.07 tolerated(0.12) unknown(0) TCGA-D3-A1Q4-06 7 103292135 103292135 G A RELN Missense_Mutation p.T622I 0.42 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q4-06 7 111398733 111398733 G A DOCK4 Missense_Mutation p.R1417C 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A1Q4-06 7 120906863 120906863 G T CPED1 Splice_Site p.X878_splice 0.43 TCGA-D3-A1Q4-06 7 130353588 130353588 G A TSGA13 3'UTR 0.45 TCGA-D3-A1Q4-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-D3-A1Q4-06 7 143632411 143632411 C T OR2F2 Missense_Mutation p.S29F 0.44 tolerated(0.07) benign(0.002) TCGA-D3-A1Q4-06 7 143807498 143807498 C T OR2A2 Silent p.L275L 0.37 TCGA-D3-A1Q4-06 7 150715841 150715841 G A ATG9B Silent p.A528A 0.33 TCGA-D3-A1Q4-06 7 20421418 20421418 C T ITGB8 Silent p.L290L 0.40 TCGA-D3-A1Q4-06 7 23293870 23293870 C T GPNMB Silent p.F102F 0.31 TCGA-D3-A1Q4-06 7 34091542 34091542 C T BMPER Missense_Mutation p.S249F 0.27 tolerated(0.14) benign(0.309) TCGA-D3-A1Q4-06 7 36677509 36677509 C T AOAH Nonsense_Mutation p.W133* 0.11 TCGA-D3-A1Q4-06 7 43594324 43594324 C T HECW1 Silent p.L1548L 0.28 TCGA-D3-A1Q4-06 7 44746846 44746846 C T OGDH Silent p.I885I 0.30 TCGA-D3-A1Q4-06 7 45216990 45216990 G A RAMP3 Missense_Mutation p.M47I 0.16 tolerated(0.19) benign(0.029) TCGA-D3-A1Q4-06 7 47814647 47814647 T C PKD1L1 3'UTR 0.27 TCGA-D3-A1Q4-06 7 49842344 49842344 G A VWC2 Missense_Mutation p.G245D 0.27 deleterious(0.03) probably_damaging(1) TCGA-D3-A1Q4-06 7 57510015 57510015 C T ZNF716 Silent p.P7P 0.46 TCGA-D3-A1Q4-06 7 65547372 65547372 C T ASL Silent p.A75A 0.22 TCGA-D3-A1Q4-06 7 70229864 70229864 C T AUTS2 Silent p.T447T 0.45 TCGA-D3-A1Q4-06 7 72985206 72985206 G A TBL2 Silent p.R325R 0.30 TCGA-D3-A1Q4-06 7 87047888 87047888 T A ABCB4 Missense_Mutation p.T815S 0.28 deleterious(0.02) possibly_damaging(0.58) TCGA-D3-A1Q4-06 7 90895683 90895683 C T FZD1 Silent p.F496F 0.27 TCGA-D3-A1Q4-06 7 92733974 92733974 C T SAMD9 Silent p.T479T 0.41 TCGA-D3-A1Q4-06 7 97822385 97822385 C T LMTK2 Missense_Mutation p.L870F 0.30 tolerated(0.05) possibly_damaging(0.727) TCGA-D3-A1Q4-06 7 99436782 99436782 G A CYP3A43 Missense_Mutation p.G69R 0.19 deleterious(0.02) possibly_damaging(0.902) TCGA-D3-A1Q4-06 8 10467849 10467849 T C RP1L1 Silent p.Q1253Q 0.25 TCGA-D3-A1Q4-06 8 109797318 109797318 G A TMEM74 Missense_Mutation p.H4Y 0.10 tolerated(0.08) benign(0.005) TCGA-D3-A1Q4-06 8 120774830 120774830 G A TAF2 Missense_Mutation p.R795C 0.49 deleterious(0) benign(0.283) TCGA-D3-A1Q4-06 8 124206317 124206317 G A FAM83A Silent p.R234R 0.18 TCGA-D3-A1Q4-06 8 142367222 142367222 G A GPR20 Missense_Mutation p.P268S 0.63 tolerated(0.12) benign(0.326) TCGA-D3-A1Q4-06 8 144943375 144943375 C T EPPK1 Silent p.Q1349Q 0.15 TCGA-D3-A1Q4-06 8 144946505 144946505 G A EPPK1 Missense_Mutation p.T306I 0.17 benign(0.02) TCGA-D3-A1Q4-06 8 145947274 145947274 C T ZNF251 Missense_Mutation p.E591K 0.41 deleterious(0.05) benign(0.292) TCGA-D3-A1Q4-06 8 17157285 17157285 C T MTMR7 3'UTR 0.26 TCGA-D3-A1Q4-06 8 17581343 17581343 C T MTUS1 Splice_Site p.X763_splice 0.26 TCGA-D3-A1Q4-06 8 2048769 2048769 C T MYOM2 Silent p.F848F 0.25 TCGA-D3-A1Q4-06 8 35425736 35425736 G A UNC5D Missense_Mutation p.R148K 0.27 tolerated(0.06) probably_damaging(0.963) TCGA-D3-A1Q4-06 8 67974244 67974244 G A COPS5 5'UTR 0.43 TCGA-D3-A1Q4-06 8 69104649 69104649 G C PREX2 Missense_Mutation p.C1498S 0.09 tolerated_low_confidence(0.21) benign(0.214) TCGA-D3-A1Q4-06 8 95265294 95265294 C T GEM Silent p.T126T 0.40 TCGA-D3-A1Q4-06 8 95508607 95508607 G C KIAA1429 Missense_Mutation p.S1444R 0.23 tolerated(0.42) benign(0.08) TCGA-D3-A1Q4-06 8 99168559 99168559 C T POP1 Missense_Mutation p.S780L 0.32 tolerated(0.38) benign(0.004) TCGA-D3-A1Q4-06 9 107289106 107289106 G A OR13C4 Missense_Mutation p.P129S 0.24 deleterious(0.01) benign(0.048) TCGA-D3-A1Q4-06 9 111979209 111979209 G A EPB41L4B Silent p.S542S 0.20 TCGA-D3-A1Q4-06 9 113169591 113169591 C T SVEP1 Nonsense_Mutation p.W2763* 0.23 TCGA-D3-A1Q4-06 9 116131915 116131915 C T BSPRY Silent p.I234I 0.29 TCGA-D3-A1Q4-06 9 119903635 119903635 C T ASTN2 Intron 0.23 TCGA-D3-A1Q4-06 9 121929537 121929537 T A BRINP1 Missense_Mutation p.N704I 0.15 deleterious(0) probably_damaging(0.979) TCGA-D3-A1Q4-06 9 125289456 125289456 C T OR1N1 Silent p.G39G 0.22 TCGA-D3-A1Q4-06 9 128000451 128000451 A T HSPA5 Missense_Mutation p.N457K 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.569) TCGA-D3-A1Q4-06 9 131735486 131735486 C T NUP188 Silent p.F387F 0.18 TCGA-D3-A1Q4-06 9 133342128 133342128 G A ASS1 Missense_Mutation p.R146K 0.30 tolerated(0.1) benign(0.288) TCGA-D3-A1Q4-06 9 134473699 134473699 T A RAPGEF1 Splice_Site p.X666_splice 0.17 TCGA-D3-A1Q4-06 9 135985749 135985749 G A RALGDS Missense_Mutation p.T141I 0.32 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q4-06 9 139279172 139279172 C T SNAPC4 Missense_Mutation p.G474S 0.26 deleterious(0) probably_damaging(0.946) TCGA-D3-A1Q4-06 9 139835775 139835775 G A FBXW5 Missense_Mutation p.A462V 0.23 deleterious(0) possibly_damaging(0.887) TCGA-D3-A1Q4-06 9 140458908 140458908 G A DPH7 Silent p.I309I 0.21 TCGA-D3-A1Q4-06 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.32 TCGA-D3-A1Q4-06 9 36083538 36083538 C T RECK Missense_Mutation p.P206S 0.30 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A1Q4-06 9 84606832 84606832 C T SPATA31D1 Missense_Mutation p.H483Y 0.09 tolerated(0.79) benign(0.213) TCGA-D3-A1Q4-06 9 90499837 90499837 G A SPATA31E1 Silent p.R145R 0.43 TCGA-D3-A1Q4-06 9 90535284 90535284 G A SPATA31C1 RNA 0.26 TCGA-D3-A1Q4-06 9 94486933 94486933 C T ROR2 Missense_Mutation p.D615N 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A1Q4-06 X 114141517 114141517 G A HTR2C Missense_Mutation p.E306K 0.34 deleterious(0) probably_damaging(0.992) TCGA-D3-A1Q4-06 X 134989122 134989122 G A SAGE1 Missense_Mutation p.M258I 0.24 tolerated(0.36) benign(0.002) TCGA-D3-A1Q4-06 X 150911705 150911705 G A CNGA2 Missense_Mutation p.E244K 0.32 tolerated(0.18) possibly_damaging(0.622) TCGA-D3-A1Q4-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.33 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q4-06 X 24546235 24546235 C T PDK3 Missense_Mutation p.R299C 0.17 tolerated(0.05) benign(0.118) TCGA-D3-A1Q4-06 X 26157834 26157834 G A MAGEB18 Missense_Mutation p.M244I 0.25 tolerated(1) benign(0) TCGA-D3-A1Q4-06 X 2933366 2933366 C T ARSH Silent p.I232I 0.24 TCGA-D3-A1Q4-06 X 63410334 63410334 G A AMER1 Missense_Mutation p.P945S 0.26 tolerated(0.14) benign(0.099) TCGA-D3-A1Q4-06 X 64141834 64141834 G A ZC4H2 Missense_Mutation p.R30C 0.26 deleterious(0) probably_damaging(0.947) TCGA-D3-A1Q4-06 X 73044503 73044503 C T XIST RNA 0.36 TCGA-D3-A1Q4-06 X 73962840 73962840 C T KIAA2022 Missense_Mutation p.E518K 0.38 deleterious(0.03) probably_damaging(0.913) TCGA-D3-A1Q4-06 X 83419362 83419362 C T RPS6KA6 Missense_Mutation p.E39K 0.29 tolerated(0.33) benign(0.028) TCGA-D3-A1Q5-06 10 101841285 101841285 C T CPN1 Missense_Mutation p.R33Q 0.24 tolerated(0.13) benign(0.219) TCGA-D3-A1Q5-06 10 116060094 116060094 G A AFAP1L2 Missense_Mutation p.P606S 0.39 tolerated(0.19) benign(0.014) TCGA-D3-A1Q5-06 10 119043055 119043055 C T PDZD8 Silent p.E1063E 0.38 TCGA-D3-A1Q5-06 10 13275593 13275593 C T UCMA Silent p.S55S 0.35 TCGA-D3-A1Q5-06 10 17110650 17110652 AGA - CUBN In_Frame_Del p.S915del 0.90 TCGA-D3-A1Q5-06 10 26305800 26305800 G A MYO3A Missense_Mutation p.G187E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 10 43287972 43287972 C A BMS1 Silent p.R271R 0.08 TCGA-D3-A1Q5-06 10 48429148 48429148 G T GDF10 Silent p.V246V 0.79 TCGA-D3-A1Q5-06 10 88752144 88752144 G A RP11-96C23.5 RNA 0.33 TCGA-D3-A1Q5-06 10 93773779 93773779 C T BTAF1 Missense_Mutation p.P1526L 0.89 deleterious(0.02) benign(0.098) TCGA-D3-A1Q5-06 11 10597930 10597930 C T MRVI1 Silent p.R896R 0.84 TCGA-D3-A1Q5-06 11 107965645 107965645 A T CUL5 Silent p.V558V 0.55 TCGA-D3-A1Q5-06 11 114569393 114569393 C T NXPE2 Silent p.F253F 0.41 TCGA-D3-A1Q5-06 11 114569394 114569394 T C NXPE2 Missense_Mutation p.Y254H 0.41 deleterious(0.01) probably_damaging(0.952) TCGA-D3-A1Q5-06 11 118965764 118965764 G A H2AFX Missense_Mutation p.A114V 0.46 deleterious_low_confidence(0.02) benign(0.064) TCGA-D3-A1Q5-06 11 119170573 119170573 C T CBL 3'UTR 0.88 TCGA-D3-A1Q5-06 11 120702653 120702653 C T GRIK4 Missense_Mutation p.P202S 0.93 deleterious(0.01) benign(0.359) TCGA-D3-A1Q5-06 11 12316208 12316208 C G MICALCL Missense_Mutation p.F410L 0.36 tolerated(0.38) benign(0.005) TCGA-D3-A1Q5-06 11 123894487 123894487 C T OR10G9 Silent p.F256F 0.88 TCGA-D3-A1Q5-06 11 129785642 129785642 G A PRDM10 Silent p.P817P 0.49 TCGA-D3-A1Q5-06 11 47260461 47260461 C T DDB2 3'UTR 0.33 TCGA-D3-A1Q5-06 11 48328546 48328546 C T OR4S1 Missense_Mutation p.R258C 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 11 4936236 4936236 G A OR51G2 Missense_Mutation p.L220F 0.31 tolerated(0.77) benign(0.052) TCGA-D3-A1Q5-06 11 4967853 4967853 G A OR51A4 Missense_Mutation p.P160S 0.22 deleterious(0) probably_damaging(0.973) TCGA-D3-A1Q5-06 11 55735631 55735631 A T OR10AG1 Nonsense_Mutation p.C103* 0.47 TCGA-D3-A1Q5-06 11 55872986 55872986 C A OR8H2 Silent p.S156S 0.42 TCGA-D3-A1Q5-06 11 57958136 57958136 G A OR9Q2 Silent p.P58P 0.95 TCGA-D3-A1Q5-06 11 58660160 58660160 G A GLYATL1P2 RNA 0.93 TCGA-D3-A1Q5-06 11 58892632 58892632 C T FAM111B Silent p.P354P 0.39 TCGA-D3-A1Q5-06 11 62593012 62593012 C T STX5 Splice_Site p.X142_splice 0.35 TCGA-D3-A1Q5-06 11 6588975 6588975 T A DNHD1 Missense_Mutation p.F4079Y 0.45 benign(0.15) TCGA-D3-A1Q5-06 11 66099670 66099670 G A RIN1 3'UTR 0.48 TCGA-D3-A1Q5-06 11 66134020 66134020 G A SLC29A2 Missense_Mutation p.P250L 0.94 tolerated(0.18) benign(0.086) TCGA-D3-A1Q5-06 11 6816938 6816938 A T OR6A2 Translation_Start_Site p.M1? 0.39 deleterious(0) possibly_damaging(0.869) TCGA-D3-A1Q5-06 11 70336458 70336458 G C SHANK2 Missense_Mutation p.T826R 0.82 tolerated(0.55) benign(0.044) TCGA-D3-A1Q5-06 11 83243757 83243757 C T DLG2 Silent p.S729S 0.44 TCGA-D3-A1Q5-06 11 86519436 86519436 G A PRSS23 Missense_Mutation p.E251K 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 11 99690398 99690398 G A CNTN5 Missense_Mutation p.G60E 0.34 tolerated_low_confidence(0.12) benign(0.016) TCGA-D3-A1Q5-06 12 104071278 104071278 G A STAB2 Silent p.Q898Q 0.33 TCGA-D3-A1Q5-06 12 104144483 104144483 G A STAB2 Missense_Mutation p.D2189N 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q5-06 12 105462511 105462511 C T ALDH1L2 Missense_Mutation p.G194R 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A1Q5-06 12 118520090 118520090 G A VSIG10 Missense_Mutation p.A169V 0.29 tolerated(0.17) benign(0.055) TCGA-D3-A1Q5-06 12 120595757 120595757 G A GCN1L1 Missense_Mutation p.H995Y 0.26 benign(0.059) TCGA-D3-A1Q5-06 12 121790250 121790250 G A ANAPC5 5'UTR 0.33 TCGA-D3-A1Q5-06 12 121790251 121790251 G A ANAPC5 5'UTR 0.35 TCGA-D3-A1Q5-06 12 123087421 123087421 C T KNTC1 Missense_Mutation p.S1624L 0.11 deleterious(0.01) benign(0.066) TCGA-D3-A1Q5-06 12 123186668 123186668 G A HCAR2 3'UTR 0.31 TCGA-D3-A1Q5-06 12 124819812 124819812 C T NCOR2 Missense_Mutation p.G2094S 0.25 benign(0.042) TCGA-D3-A1Q5-06 12 130898740 130898740 G A RIMBP2 Missense_Mutation p.P861L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 12 13102756 13102756 G A GPRC5D Missense_Mutation p.S188F 0.43 deleterious(0) probably_damaging(0.977) TCGA-D3-A1Q5-06 12 13103121 13103121 G A GPRC5D Silent p.F66F 0.27 TCGA-D3-A1Q5-06 12 131487840 131487840 C T GPR133 Silent p.A379A 0.34 TCGA-D3-A1Q5-06 12 21331569 21331569 C T SLCO1B1 Missense_Mutation p.R181C 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 12 22069901 22069901 C T ABCC9 Missense_Mutation p.M181I 0.23 tolerated(0.15) benign(0.009) TCGA-D3-A1Q5-06 12 32481425 32481425 C T BICD1 Missense_Mutation p.S679F 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A1Q5-06 12 49421849 49421849 G A KMT2D Missense_Mutation p.P4820S 0.55 unknown(0) TCGA-D3-A1Q5-06 12 49444873 49444873 C T KMT2D Missense_Mutation p.E865K 0.29 unknown(0) TCGA-D3-A1Q5-06 12 56826824 56826824 G A TIMELESS Missense_Mutation p.L173F 0.24 tolerated(0.16) benign(0.013) TCGA-D3-A1Q5-06 12 57111583 57111583 G A NACA Intron 0.30 TCGA-D3-A1Q5-06 12 69080761 69080761 G A NUP107 5'UTR 0.64 TCGA-D3-A1Q5-06 12 69265724 69265724 C A CPM Nonsense_Mutation p.E91* 0.28 TCGA-D3-A1Q5-06 12 70931865 70931865 G A PTPRB Intron 0.28 TCGA-D3-A1Q5-06 12 85264383 85264383 G A SLC6A15 Missense_Mutation p.P457S 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A1Q5-06 12 88566441 88566441 T C TMTC3 Missense_Mutation p.V373A 0.28 deleterious(0) possibly_damaging(0.907) TCGA-D3-A1Q5-06 12 98848882 98848882 C T SLC9A7P1 RNA 0.17 TCGA-D3-A1Q5-06 13 110850846 110850846 G A COL4A1 Missense_Mutation p.S418F 0.25 unknown(0) TCGA-D3-A1Q5-06 13 113086757 113086757 G A SPACA7 Splice_Site p.X149_splice 0.27 TCGA-D3-A1Q5-06 13 25487116 25487116 G A CENPJ Silent p.F16F 0.31 TCGA-D3-A1Q5-06 13 61985654 61985654 C T PCDH20 Missense_Mutation p.E860K 0.23 tolerated(0.11) benign(0.395) TCGA-D3-A1Q5-06 13 79190530 79190530 A C RNF219 Missense_Mutation p.S456A 0.30 tolerated(0.84) benign(0.174) TCGA-D3-A1Q5-06 13 96238340 96238340 G A DZIP1 Missense_Mutation p.R757C 0.36 deleterious(0) possibly_damaging(0.517) TCGA-D3-A1Q5-06 13 99361881 99361881 G A SLC15A1 Missense_Mutation p.P338S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 13 99376274 99376274 G A SLC15A1 Missense_Mutation p.S86L 0.28 tolerated(0.07) benign(0.009) TCGA-D3-A1Q5-06 14 106091258 106091258 G A IGHG4 Silent p.I212I 0.22 TCGA-D3-A1Q5-06 14 23858140 23858140 G A MYH6 Missense_Mutation p.S1368L 0.25 deleterious(0.02) benign(0.013) TCGA-D3-A1Q5-06 14 23865593 23865593 C T MYH6 Missense_Mutation p.E777K 0.58 deleterious(0) possibly_damaging(0.513) TCGA-D3-A1Q5-06 14 31107426 31107426 A T SCFD1 Silent p.A136A 0.34 TCGA-D3-A1Q5-06 14 63269135 63269135 G A KCNH5 Silent p.Y578Y 0.35 TCGA-D3-A1Q5-06 14 74971851 74971851 C T LTBP2 Missense_Mutation p.G1402R 0.23 tolerated(0.15) benign(0.06) TCGA-D3-A1Q5-06 14 74995673 74995673 G A LTBP2 Silent p.L714L 0.40 TCGA-D3-A1Q5-06 14 75018928 75018928 T C LTBP2 Missense_Mutation p.K454R 0.25 tolerated(0.37) benign(0.002) TCGA-D3-A1Q5-06 14 75513677 75513677 A G MLH3 Silent p.S894S 0.26 TCGA-D3-A1Q5-06 14 95081101 95081101 C T SERPINA3 Missense_Mutation p.T108M 0.50 deleterious(0.01) possibly_damaging(0.885) TCGA-D3-A1Q5-06 14 96706662 96706662 C T BDKRB2 Intron 0.89 TCGA-D3-A1Q5-06 15 23261913 23261913 G A GOLGA8I Missense_Mutation p.R342K 0.45 tolerated(0.07) benign(0.166) TCGA-D3-A1Q5-06 15 23931429 23931429 G A NDN Silent p.H312H 0.34 TCGA-D3-A1Q5-06 15 28419645 28419645 G A HERC2 Missense_Mutation p.S3318L 0.15 possibly_damaging(0.706) TCGA-D3-A1Q5-06 15 29561137 29561137 G A NDNL2 Missense_Mutation p.T258I 0.38 tolerated(0.24) possibly_damaging(0.557) TCGA-D3-A1Q5-06 15 34113767 34113767 C T RYR3 Silent p.I3653I 0.49 TCGA-D3-A1Q5-06 15 34657291 34657291 G A LPCAT4 Silent p.F132F 0.43 TCGA-D3-A1Q5-06 15 41247709 41247709 C T CHAC1 Nonsense_Mutation p.Q178* 0.23 TCGA-D3-A1Q5-06 15 42285024 42285024 C T PLA2G4E Missense_Mutation p.E461K 0.22 tolerated(1) possibly_damaging(0.872) TCGA-D3-A1Q5-06 15 43501592 43501592 C T EPB42 Missense_Mutation p.E268K 0.44 tolerated(0.05) possibly_damaging(0.557) TCGA-D3-A1Q5-06 15 43748439 43748439 G A TP53BP1 Silent p.S789S 0.15 TCGA-D3-A1Q5-06 15 44864950 44864950 C T SPG11 Missense_Mutation p.D2092N 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A1Q5-06 15 48722978 48722978 C T FBN1 Missense_Mutation p.G2254E 0.43 benign(0.02) TCGA-D3-A1Q5-06 15 51993429 51993429 G A SCG3 Missense_Mutation p.D399N 0.23 tolerated_low_confidence(0.78) benign(0.316) TCGA-D3-A1Q5-06 15 59416999 59416999 C T CCNB2 Silent p.L374L 0.23 TCGA-D3-A1Q5-06 15 63128194 63128194 C T TLN2 Silent p.V2432V 0.42 TCGA-D3-A1Q5-06 15 65621406 65621406 C T IGDCC3 Silent p.G762G 0.48 TCGA-D3-A1Q5-06 15 66857168 66857168 C T LCTL Nonsense_Mutation p.W43* 0.23 TCGA-D3-A1Q5-06 15 71197069 71197069 C T LRRC49 Missense_Mutation p.R164C 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 15 71447214 71447214 C T THSD4 Silent p.F14F 0.24 TCGA-D3-A1Q5-06 15 73889624 73889624 G A NPTN Missense_Mutation p.P60S 0.43 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q5-06 15 76196261 76196261 T G FBXO22 5'UTR 0.30 TCGA-D3-A1Q5-06 15 78397660 78397660 C T CIB2 Missense_Mutation p.R186Q 0.24 deleterious(0.02) possibly_damaging(0.887) TCGA-D3-A1Q5-06 15 81578108 81578108 G A IL16 Silent p.T423T 0.22 TCGA-D3-A1Q5-06 15 81636306 81636306 G A TMC3 Silent p.F533F 0.12 TCGA-D3-A1Q5-06 15 82335724 82335724 G A MEX3B Missense_Mutation p.S496L 0.25 deleterious(0.05) benign(0.017) TCGA-D3-A1Q5-06 16 18602567 18602567 C T ABCC6P1 RNA 0.44 TCGA-D3-A1Q5-06 16 2205081 2205081 G A TRAF7 5'Flank 0.33 TCGA-D3-A1Q5-06 16 27519956 27519956 C T GTF3C1 Missense_Mutation p.G383R 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 16 30409766 30409766 C T ZNF48 Missense_Mutation p.P399S 0.38 tolerated(0.55) possibly_damaging(0.69) TCGA-D3-A1Q5-06 16 30516614 30516614 C T ITGAL Missense_Mutation p.T762I 0.38 deleterious(0) benign(0.158) TCGA-D3-A1Q5-06 16 30516615 30516615 C T ITGAL Silent p.T762T 0.35 TCGA-D3-A1Q5-06 16 31372416 31372416 G A ITGAX Nonsense_Mutation p.W298* 0.45 TCGA-D3-A1Q5-06 16 3406485 3406485 C T OR2C1 Missense_Mutation p.P182L 0.37 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A1Q5-06 16 67694198 67694198 G A ACD Missense_Mutation p.L62F 0.35 tolerated_low_confidence(0.2) possibly_damaging(0.86) TCGA-D3-A1Q5-06 16 67763285 67763285 G A RANBP10 Missense_Mutation p.S417F 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A1Q5-06 16 77465457 77465457 G A ADAMTS18 Missense_Mutation p.S77L 0.47 deleterious(0) probably_damaging(0.982) TCGA-D3-A1Q5-06 17 10728497 10728497 G A PIRT 3'UTR 0.45 TCGA-D3-A1Q5-06 17 11666846 11666846 C T DNAH9 Missense_Mutation p.P2362L 0.27 benign(0.033) TCGA-D3-A1Q5-06 17 1543935 1543935 G A SCARF1 Missense_Mutation p.P273S 0.36 deleterious(0.02) benign(0.015) TCGA-D3-A1Q5-06 17 18967336 18967336 T C SNORD3B-2 RNA 0.06 TCGA-D3-A1Q5-06 17 19186624 19186624 G A EPN2 Silent p.L64L 0.28 TCGA-D3-A1Q5-06 17 19445735 19445735 C T SLC47A1 Silent p.I55I 0.34 TCGA-D3-A1Q5-06 17 19744854 19744854 T C ULK2 Missense_Mutation p.S218G 0.25 deleterious(0) probably_damaging(0.914) TCGA-D3-A1Q5-06 17 26851891 26851891 T G FOXN1 Missense_Mutation p.V165G 0.11 deleterious_low_confidence(0) benign(0.066) TCGA-D3-A1Q5-06 17 28576012 28576012 G A BLMH 3'UTR 0.53 TCGA-D3-A1Q5-06 17 30677305 30677305 A C ZNF207 Translation_Start_Site p.M1? 0.22 deleterious(0) benign(0.018) TCGA-D3-A1Q5-06 17 32957127 32957127 C T TMEM132E Missense_Mutation p.S390F 0.52 deleterious(0.01) probably_damaging(0.937) TCGA-D3-A1Q5-06 17 39724859 39724859 G A KRT9 Silent p.S357S 0.55 TCGA-D3-A1Q5-06 17 40831617 40831617 G A CCR10 Missense_Mutation p.S348F 0.29 deleterious(0.05) possibly_damaging(0.603) TCGA-D3-A1Q5-06 17 40844536 40844536 C T CNTNAP1 Silent p.F850F 0.34 TCGA-D3-A1Q5-06 17 40997941 40997941 C T AOC2 Missense_Mutation p.P433L 0.31 deleterious(0.02) probably_damaging(0.945) TCGA-D3-A1Q5-06 17 4788786 4788786 G A MINK1 Missense_Mutation p.G173R 0.24 deleterious(0) probably_damaging(0.991) TCGA-D3-A1Q5-06 17 4883913 4883913 G A CAMTA2 Missense_Mutation p.S258F 0.31 deleterious(0) benign(0.396) TCGA-D3-A1Q5-06 17 4995561 4995561 A T ZFP3 Missense_Mutation p.E254D 0.21 tolerated(0.2) benign(0.057) TCGA-D3-A1Q5-06 17 53084924 53084924 C T STXBP4 Missense_Mutation p.P211L 0.29 deleterious(0.02) benign(0.104) TCGA-D3-A1Q5-06 17 56344883 56344883 C T LPO Missense_Mutation p.R623W 0.23 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q5-06 17 61513423 61513423 G A CYB561 Missense_Mutation p.A98V 0.21 tolerated(0.21) probably_damaging(0.936) TCGA-D3-A1Q5-06 17 61949758 61949758 C T CSH2 Intron 0.32 TCGA-D3-A1Q5-06 17 62892945 62892945 G A LRRC37A3 Missense_Mutation p.P144L 0.25 tolerated(0.09) benign(0.009) TCGA-D3-A1Q5-06 17 6979059 6979059 C T CLEC10A Silent p.R222R 0.25 TCGA-D3-A1Q5-06 17 7699862 7699862 G A DNAH2 Silent p.G2585G 0.29 TCGA-D3-A1Q5-06 17 7755504 7755504 A G KDM6B Missense_Mutation p.I1440V 0.47 benign(0.144) TCGA-D3-A1Q5-06 17 77757844 77757844 C T CBX2 Missense_Mutation p.P201L 0.63 tolerated(0.1) possibly_damaging(0.507) TCGA-D3-A1Q5-06 17 8194179 8194179 G A SLC25A35 Missense_Mutation p.P237L 0.29 tolerated(0.1) probably_damaging(1) TCGA-D3-A1Q5-06 17 8706581 8706581 C T PIK3R6 3'UTR 0.26 TCGA-D3-A1Q5-06 18 12028052 12028052 G A IMPA2 Silent p.K167K 0.13 TCGA-D3-A1Q5-06 18 25565588 25565588 C T CDH2 Missense_Mutation p.D627N 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 18 28588455 28588455 C T DSC3 Missense_Mutation p.E434K 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A1Q5-06 18 28651688 28651688 C T DSC2 Missense_Mutation p.D670N 0.33 tolerated(0.13) benign(0.071) TCGA-D3-A1Q5-06 18 34378357 34378357 C T TPGS2 Intron 0.20 TCGA-D3-A1Q5-06 18 44625668 44625668 C T KATNAL2 Silent p.L350L 0.22 TCGA-D3-A1Q5-06 18 44625669 44625669 C T KATNAL2 Missense_Mutation p.P351S 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 18 47787456 47787456 C T CCDC11 Missense_Mutation p.E151K 0.20 tolerated(0.1) benign(0.119) TCGA-D3-A1Q5-06 18 52265165 52265165 C T DYNAP Missense_Mutation p.S141L 0.23 deleterious(0) benign(0.279) TCGA-D3-A1Q5-06 18 52544879 52544879 G A RAB27B Silent p.G21G 0.23 TCGA-D3-A1Q5-06 18 57106963 57106963 G A CCBE1 Silent p.P287P 0.22 TCGA-D3-A1Q5-06 18 691213 691213 C T ENOSF1 Missense_Mutation p.D184N 0.26 deleterious(0.01) benign(0.017) TCGA-D3-A1Q5-06 18 8819226 8819226 C T SOGA2 Missense_Mutation p.P1042L 0.17 tolerated(0.67) benign(0.008) TCGA-D3-A1Q5-06 18 9547691 9547691 T C PPP4R1 3'UTR 0.53 TCGA-D3-A1Q5-06 19 10169315 10169315 G A C3P1 RNA 0.28 TCGA-D3-A1Q5-06 19 10394749 10394749 C T ICAM1 Silent p.V226V 0.20 TCGA-D3-A1Q5-06 19 10394750 10394750 C T ICAM1 Silent p.L227L 0.20 TCGA-D3-A1Q5-06 19 11833021 11833021 G A ZNF823 Missense_Mutation p.P443L 0.22 deleterious(0.03) possibly_damaging(0.464) TCGA-D3-A1Q5-06 19 12541138 12541138 A C ZNF443 Nonsense_Mutation p.Y616* 0.20 TCGA-D3-A1Q5-06 19 14104666 14104666 G A RFX1 5'UTR 0.12 TCGA-D3-A1Q5-06 19 14104667 14104667 G A RFX1 5'UTR 0.35 TCGA-D3-A1Q5-06 19 17122508 17122508 C T CPAMD8 Silent p.A156A 0.39 TCGA-D3-A1Q5-06 19 17471340 17471340 G A PLVAP Missense_Mutation p.S440F 0.17 deleterious(0.04) possibly_damaging(0.694) TCGA-D3-A1Q5-06 19 17571430 17571430 C T NXNL1 Silent p.T83T 0.22 TCGA-D3-A1Q5-06 19 19309986 19309986 G A RFXANK Missense_Mutation p.E219K 0.42 tolerated(0.05) probably_damaging(0.969) TCGA-D3-A1Q5-06 19 24310670 24310670 T C ZNF254 Missense_Mutation p.I623T 0.25 tolerated(0.06) benign(0.366) TCGA-D3-A1Q5-06 19 2877596 2877596 C T ZNF556 Missense_Mutation p.R214C 0.39 tolerated(0.2) benign(0.032) TCGA-D3-A1Q5-06 19 2917840 2917840 C T ZNF57 Silent p.F407F 0.47 TCGA-D3-A1Q5-06 19 30314585 30314585 C T CCNE1 Silent p.A378A 0.25 TCGA-D3-A1Q5-06 19 3661969 3661969 G A PIP5K1C Nonsense_Mutation p.Q84* 0.24 TCGA-D3-A1Q5-06 19 38997004 38997004 C T RYR1 Missense_Mutation p.S2868F 0.09 possibly_damaging(0.458) TCGA-D3-A1Q5-06 19 39303554 39303554 C T LGALS4 5'UTR 0.20 TCGA-D3-A1Q5-06 19 43358102 43358102 G A PSG10P Intron 0.24 TCGA-D3-A1Q5-06 19 44933774 44933774 G A ZNF229 Silent p.V394V 0.28 TCGA-D3-A1Q5-06 19 45377707 45377707 C T PVRL2 Silent p.G338G 0.18 TCGA-D3-A1Q5-06 19 46324687 46324687 G C SYMPK Missense_Mutation p.H950D 0.51 deleterious(0) probably_damaging(0.939) TCGA-D3-A1Q5-06 19 46834510 46834510 C T HIF3A Silent p.L604L 0.16 TCGA-D3-A1Q5-06 19 4902798 4902798 C T ARRDC5 Missense_Mutation p.D28N 0.23 tolerated(0.2) benign(0.022) TCGA-D3-A1Q5-06 19 50216759 50216759 G A CPT1C Missense_Mutation p.R770H 0.25 tolerated(0.14) benign(0.042) TCGA-D3-A1Q5-06 19 51768738 51768738 G A SIGLECL1 Missense_Mutation p.G47S 0.37 tolerated(0.43) benign(0.436) TCGA-D3-A1Q5-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-D3-A1Q5-06 19 53058233 53058233 C T ZNF808 Silent p.F688F 0.21 TCGA-D3-A1Q5-06 19 54135382 54135382 C T DPRX Missense_Mutation p.R8C 0.17 tolerated(0.07) benign(0.197) TCGA-D3-A1Q5-06 19 55046941 55046941 C T KIR3DX1 Silent p.S162S 0.47 TCGA-D3-A1Q5-06 19 55224606 55224606 C T LILRP2 RNA 0.31 TCGA-D3-A1Q5-06 19 55512270 55512270 C T NLRP2 3'UTR 0.37 TCGA-D3-A1Q5-06 19 56241295 56241295 G A NLRP9 Silent p.F632F 0.22 TCGA-D3-A1Q5-06 19 56954002 56954002 C T ZNF667 Missense_Mutation p.R121Q 0.24 tolerated(0.51) benign(0.092) TCGA-D3-A1Q5-06 19 57910193 57910193 C T ZNF548 Missense_Mutation p.P192S 0.19 tolerated(0.19) benign(0.324) TCGA-D3-A1Q5-06 19 58452441 58452441 C T ZNF256 Missense_Mutation p.E579K 0.21 deleterious(0.04) benign(0.117) TCGA-D3-A1Q5-06 19 58579197 58579197 C T ZNF135 Missense_Mutation p.H473Y 0.24 tolerated(0.81) benign(0.06) TCGA-D3-A1Q5-06 19 6854108 6854108 G T VAV1 Missense_Mutation p.R828L 0.32 deleterious(0.01) benign(0.167) TCGA-D3-A1Q5-06 19 757879 757879 G A MISP Silent p.R311R 0.48 TCGA-D3-A1Q5-06 19 8595349 8595349 C T MYO1F Missense_Mutation p.E718K 0.29 tolerated(0.09) benign(0.088) TCGA-D3-A1Q5-06 19 8995693 8995693 C T MUC16 Silent p.G13765G 0.20 TCGA-D3-A1Q5-06 19 9000160 9000160 G A MUC16 Silent p.L13533L 0.26 TCGA-D3-A1Q5-06 19 9057771 9057771 G T MUC16 Missense_Mutation p.T9892K 0.23 unknown(0) TCGA-D3-A1Q5-06 19 9061464 9061464 G A MUC16 Missense_Mutation p.S8661F 0.17 unknown(0) TCGA-D3-A1Q5-06 19 9064451 9064451 G A MUC16 Silent p.S7665S 0.64 TCGA-D3-A1Q5-06 19 9085016 9085016 G A MUC16 Missense_Mutation p.P2267S 0.17 unknown(0) TCGA-D3-A1Q5-06 19 9086149 9086149 C T MUC16 Missense_Mutation p.G1889E 0.24 unknown(0) TCGA-D3-A1Q5-06 19 9089699 9089699 G A MUC16 Missense_Mutation p.P706S 0.41 unknown(0) TCGA-D3-A1Q5-06 19 9204006 9204006 C T OR1M1 Missense_Mutation p.S29F 0.40 tolerated(0.55) benign(0.094) TCGA-D3-A1Q5-06 19 9451892 9451892 C T ZNF559 Intron 0.19 TCGA-D3-A1Q5-06 1 100185185 100185185 G A FRRS1 Missense_Mutation p.S342F 0.33 tolerated(0.15) benign(0.005) TCGA-D3-A1Q5-06 1 1019489 1019489 G A C1orf159 Intron 0.27 TCGA-D3-A1Q5-06 1 103405989 103405989 C T COL11A1 Missense_Mutation p.G1093E 0.30 unknown(0) TCGA-D3-A1Q5-06 1 11008794 11008794 G A C1orf127 Silent p.P466P 0.19 TCGA-D3-A1Q5-06 1 113460027 113460027 G A SLC16A1 Missense_Mutation p.A334V 0.48 deleterious(0) probably_damaging(0.929) TCGA-D3-A1Q5-06 1 114483892 114483892 T G HIPK1 Missense_Mutation p.L296W 0.35 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q5-06 1 115143503 115143503 G A DENND2C Missense_Mutation p.P632S 0.39 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q5-06 1 12920100 12920100 C T PRAMEF2 Silent p.F280F 0.35 TCGA-D3-A1Q5-06 1 152128537 152128537 C T RPTN Missense_Mutation p.M346I 0.63 deleterious(0.04) benign(0.002) TCGA-D3-A1Q5-06 1 152282657 152282657 C T FLG Missense_Mutation p.G1569S 0.58 probably_damaging(0.961) TCGA-D3-A1Q5-06 1 152328507 152328507 C A FLG2 Silent p.S585S 0.34 TCGA-D3-A1Q5-06 1 152484047 152484047 C T LCE5A Missense_Mutation p.P13S 0.37 tolerated_low_confidence(0.24) unknown(0) TCGA-D3-A1Q5-06 1 155149752 155149752 G T TRIM46 Missense_Mutation p.V299L 0.66 tolerated(0.35) benign(0.03) TCGA-D3-A1Q5-06 1 156038242 156038242 C T RAB25 Nonsense_Mutation p.R141* 0.40 TCGA-D3-A1Q5-06 1 158669705 158669705 G A OR6K2 Silent p.F246F 0.16 TCGA-D3-A1Q5-06 1 158670440 158670440 C A OR6K2 Translation_Start_Site p.M1? 0.28 deleterious(0) benign(0.081) TCGA-D3-A1Q5-06 1 164815918 164815918 C A PBX1 3'UTR 0.30 TCGA-D3-A1Q5-06 1 165218838 165218838 G A LMX1A Silent p.I101I 0.35 TCGA-D3-A1Q5-06 1 171174596 171174596 C T FMO2 Missense_Mutation p.P336S 0.39 deleterious(0.01) benign(0.371) TCGA-D3-A1Q5-06 1 17274870 17274870 C T CROCC Silent p.A853A 0.29 TCGA-D3-A1Q5-06 1 17274871 17274871 C T CROCC Missense_Mutation p.R854W 0.28 probably_damaging(0.961) TCGA-D3-A1Q5-06 1 175066798 175066798 G A TNN Missense_Mutation p.A612T 0.56 tolerated(0.12) benign(0.088) TCGA-D3-A1Q5-06 1 17681061 17681061 C T PADI4 Nonsense_Mutation p.Q397* 0.40 TCGA-D3-A1Q5-06 1 176833292 176833292 C T ASTN1 3'UTR 0.45 TCGA-D3-A1Q5-06 1 176863806 176863806 G A ASTN1 Silent p.P944P 0.42 TCGA-D3-A1Q5-06 1 177937008 177937008 G A SEC16B Missense_Mutation p.P37S 0.26 tolerated(0.09) benign(0.066) TCGA-D3-A1Q5-06 1 183192282 183192282 G A LAMC2 Missense_Mutation p.G259E 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 1 185970530 185970530 C T HMCN1 Silent p.P1390P 0.29 TCGA-D3-A1Q5-06 1 18807970 18807970 G A KLHDC7A Silent p.P165P 0.18 TCGA-D3-A1Q5-06 1 200090021 200090021 G A NR5A2 Missense_Mutation p.R439H 0.32 tolerated(0.53) benign(0.014) TCGA-D3-A1Q5-06 1 202287980 202287980 C T LGR6 Missense_Mutation p.P850L 0.30 tolerated(0.14) benign(0.044) TCGA-D3-A1Q5-06 1 202702780 202702780 G A KDM5B Missense_Mutation p.H1220Y 0.30 tolerated(0.77) benign(0.005) TCGA-D3-A1Q5-06 1 204587544 204587544 C T LRRN2 Missense_Mutation p.G526E 0.62 tolerated(0.48) benign(0.1) TCGA-D3-A1Q5-06 1 206941922 206941922 C T IL10 3'UTR 0.58 TCGA-D3-A1Q5-06 1 209807876 209807876 G A LAMB3 Silent p.V160V 0.28 TCGA-D3-A1Q5-06 1 212800072 212800072 C T FAM71A 3'UTR 0.24 TCGA-D3-A1Q5-06 1 216348557 216348557 C T USH2A Intron 0.20 TCGA-D3-A1Q5-06 1 228345525 228345525 C T GJC2 Silent p.F22F 0.42 TCGA-D3-A1Q5-06 1 23111152 23111152 G A EPHB2 Missense_Mutation p.E132K 0.26 tolerated(0.06) probably_damaging(0.967) TCGA-D3-A1Q5-06 1 233807111 233807111 G A KCNK1 Silent p.V282V 0.48 TCGA-D3-A1Q5-06 1 237948243 237948243 C T RYR2 Missense_Mutation p.P4411S 0.40 possibly_damaging(0.632) TCGA-D3-A1Q5-06 1 24408647 24408647 G A MYOM3 Silent p.L708L 0.61 TCGA-D3-A1Q5-06 1 247592992 247592992 G A NLRP3 Silent p.G754G 0.61 TCGA-D3-A1Q5-06 1 247694992 247694992 G A OR2C3 Silent p.F274F 0.29 TCGA-D3-A1Q5-06 1 247752556 247752556 G A OR2G2 Missense_Mutation p.E299K 0.56 deleterious(0) benign(0.271) TCGA-D3-A1Q5-06 1 248458365 248458365 G A OR2T12 Silent p.I172I 0.61 TCGA-D3-A1Q5-06 1 248722705 248722705 G A OR2T29 Silent p.L30L 0.73 TCGA-D3-A1Q5-06 1 26506951 26506951 C A CNKSR1 Missense_Mutation p.D20E 0.22 tolerated(0.15) probably_damaging(0.936) TCGA-D3-A1Q5-06 1 34101975 34101975 G T CSMD2 Silent p.R1612R 0.78 TCGA-D3-A1Q5-06 1 40980327 40980328 AA - EXO5 Frame_Shift_Del p.K38Gfs*4 0.13 TCGA-D3-A1Q5-06 1 43772659 43772659 C T TIE1 Silent p.I211I 0.64 TCGA-D3-A1Q5-06 1 45500099 45500099 G A ZSWIM5 Silent p.S778S 0.28 TCGA-D3-A1Q5-06 1 47276851 47276851 G A CYP4B1 Nonsense_Mutation p.W121* 0.22 TCGA-D3-A1Q5-06 1 50666855 50666855 C T ELAVL4 3'UTR 0.58 TCGA-D3-A1Q5-06 1 75608911 75608911 C T LHX8 Silent p.S166S 0.29 TCGA-D3-A1Q5-06 1 89886727 89886727 C T GBP1P1 RNA 0.16 TCGA-D3-A1Q5-06 1 92573455 92573455 G A BTBD8 Missense_Mutation p.E187K 0.23 deleterious(0.02) benign(0.037) TCGA-D3-A1Q5-06 20 13370978 13370978 C T TASP1 3'UTR 0.37 TCGA-D3-A1Q5-06 20 1559170 1559170 C T RP4-576H24.4 Missense_Mutation p.E82K 0.44 tolerated(0.05) benign(0.082) TCGA-D3-A1Q5-06 20 17601382 17601382 G A RRBP1 Missense_Mutation p.A729V 0.40 tolerated(0.3) possibly_damaging(0.682) TCGA-D3-A1Q5-06 20 21695183 21695183 C T PAX1 Silent p.S449S 0.20 TCGA-D3-A1Q5-06 20 2290440 2290440 G A TGM3 Missense_Mutation p.G49S 0.27 tolerated(0.19) benign(0.004) TCGA-D3-A1Q5-06 20 25059464 25059464 C T VSX1 Splice_Site p.X209_splice 0.24 TCGA-D3-A1Q5-06 20 25262702 25262702 G A PYGB Silent p.K479K 0.41 TCGA-D3-A1Q5-06 20 30730878 30730878 G A TM9SF4 Missense_Mutation p.E208K 0.21 deleterious(0.02) possibly_damaging(0.477) TCGA-D3-A1Q5-06 20 34802335 34802335 C T EPB41L1 Silent p.I747I 0.37 TCGA-D3-A1Q5-06 20 60773899 60773899 C T MTG2 Silent p.H226H 0.19 TCGA-D3-A1Q5-06 20 6100139 6100139 G T FERMT1 Silent p.P21P 0.37 TCGA-D3-A1Q5-06 20 61143569 61143569 G A C20orf166 5'Flank 0.23 TCGA-D3-A1Q5-06 20 62658476 62658476 A G PRPF6 Missense_Mutation p.M724V 0.20 tolerated(0.23) benign(0.001) TCGA-D3-A1Q5-06 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.20 deleterious(0.03) possibly_damaging(0.883) TCGA-D3-A1Q5-06 21 16339196 16339196 G A NRIP1 Missense_Mutation p.P440S 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 21 19629391 19629391 G A CHODL Nonsense_Mutation p.W165* 0.38 TCGA-D3-A1Q5-06 21 31692073 31692073 C T KRTAP26-1 Missense_Mutation p.G94E 0.53 deleterious(0.02) possibly_damaging(0.788) TCGA-D3-A1Q5-06 21 31933583 31933583 C T KRTAP19-7 Missense_Mutation p.G9E 0.84 tolerated_low_confidence(0.44) unknown(0) TCGA-D3-A1Q5-06 21 33068918 33068918 G A SCAF4 Missense_Mutation p.P308L 0.91 benign(0.005) TCGA-D3-A1Q5-06 21 45211307 45211307 C T RRP1 Silent p.L70L 0.88 TCGA-D3-A1Q5-06 22 19055622 19055622 G A DGCR2 Missense_Mutation p.R107C 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A1Q5-06 22 22065117 22065117 G A YPEL1 5'UTR 0.28 TCGA-D3-A1Q5-06 22 22556283 22556283 C T IGLV11-55 Missense_Mutation p.P33S 0.34 tolerated(0.08) benign(0.153) TCGA-D3-A1Q5-06 22 24628100 24628100 C T GGT5 Missense_Mutation p.E225K 0.36 tolerated(0.19) possibly_damaging(0.868) TCGA-D3-A1Q5-06 22 25264409 25264409 C T SGSM1 Missense_Mutation p.P354L 0.28 deleterious(0) probably_damaging(0.947) TCGA-D3-A1Q5-06 22 25331289 25331289 C T TMEM211 3'UTR 0.28 TCGA-D3-A1Q5-06 22 25753257 25753257 G A LRP5L Missense_Mutation p.L135F 0.60 deleterious(0) probably_damaging(0.965) TCGA-D3-A1Q5-06 22 26692964 26692964 C T SEZ6L Silent p.I360I 0.31 TCGA-D3-A1Q5-06 22 29704610 29704610 C T GAS2L1 Missense_Mutation p.P172L 0.31 tolerated(0.46) benign(0.424) TCGA-D3-A1Q5-06 22 29704611 29704611 C T GAS2L1 Silent p.P172P 0.31 TCGA-D3-A1Q5-06 22 30766769 30766769 C T CCDC157 Missense_Mutation p.A292V 0.33 tolerated(0.08) possibly_damaging(0.453) TCGA-D3-A1Q5-06 22 38131088 38131088 G A TRIOBP Nonsense_Mutation p.W1582* 0.20 TCGA-D3-A1Q5-06 22 41735889 41735889 C T ZC3H7B Missense_Mutation p.P296S 0.24 tolerated(0.14) benign(0.116) TCGA-D3-A1Q5-06 22 43735192 43735192 G A SCUBE1 Silent p.I46I 0.31 TCGA-D3-A1Q5-06 22 46656931 46656931 G T PKDREJ Silent p.T763T 0.35 TCGA-D3-A1Q5-06 22 46656980 46656980 C A PKDREJ Missense_Mutation p.S747I 0.25 tolerated(0.07) benign(0.223) TCGA-D3-A1Q5-06 22 46752874 46752874 G A TRMU Missense_Mutation p.D413N 0.25 tolerated_low_confidence(0.5) benign(0) TCGA-D3-A1Q5-06 2 10918788 10918788 G T ATP6V1C2 Missense_Mutation p.V352L 0.23 deleterious(0.02) possibly_damaging(0.588) TCGA-D3-A1Q5-06 2 120221717 120221717 G A SCTR Silent p.T206T 0.27 TCGA-D3-A1Q5-06 2 131520495 131520495 C T AMER3 Missense_Mutation p.P284S 0.96 tolerated(0.47) benign(0.026) TCGA-D3-A1Q5-06 2 1437219 1437219 G A TPO Silent p.K63K 0.24 TCGA-D3-A1Q5-06 2 159490799 159490799 C T PKP4 Silent p.P520P 0.36 TCGA-D3-A1Q5-06 2 160241750 160241750 G A BAZ2B Missense_Mutation p.A1201V 0.29 probably_damaging(0.968) TCGA-D3-A1Q5-06 2 160604791 160604791 A G MARCH7 Silent p.V330V 0.39 TCGA-D3-A1Q5-06 2 163124599 163124599 G A IFIH1 Silent p.F935F 0.38 TCGA-D3-A1Q5-06 2 163302619 163302619 A C KCNH7 Missense_Mutation p.I488R 0.29 deleterious(0.03) probably_damaging(1) TCGA-D3-A1Q5-06 2 1647273 1647273 G A PXDN Silent p.I1273I 0.28 TCGA-D3-A1Q5-06 2 165956896 165956896 G A SCN3A Silent p.Y1294Y 0.86 TCGA-D3-A1Q5-06 2 179537145 179537145 G A TTN Missense_Mutation p.P11640L 0.88 TCGA-D3-A1Q5-06 2 179594552 179594552 C T TTN Missense_Mutation p.G6143E 0.89 TCGA-D3-A1Q5-06 2 182766501 182766501 C T SSFA2 Missense_Mutation p.R241C 0.92 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 2 197183420 197183420 C T HECW2 Missense_Mutation p.E732K 0.40 tolerated_low_confidence(0.17) benign(0.008) TCGA-D3-A1Q5-06 2 203383621 203383621 C T BMPR2 Missense_Mutation p.S233F 0.95 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A1Q5-06 2 228884239 228884239 C T SPHKAP Nonsense_Mutation p.W444* 0.24 TCGA-D3-A1Q5-06 2 242135234 242135234 C T ANO7 Missense_Mutation p.R149C 0.87 tolerated(0.05) benign(0.015) TCGA-D3-A1Q5-06 2 26699809 26699809 C T OTOF Missense_Mutation p.E876K 0.39 tolerated(0.1) benign(0.102) TCGA-D3-A1Q5-06 2 27305087 27305087 G A EMILIN1 Silent p.T216T 0.28 TCGA-D3-A1Q5-06 2 29240153 29240153 G A FAM179A Missense_Mutation p.R393K 0.93 tolerated(0.37) benign(0.017) TCGA-D3-A1Q5-06 2 84800642 84800642 G A DNAH6 Missense_Mutation p.E619K 0.25 deleterious(0.03) benign(0.168) TCGA-D3-A1Q5-06 3 105421045 105421045 C T CBLB Missense_Mutation p.G618R 0.53 deleterious_low_confidence(0.01) benign(0.082) TCGA-D3-A1Q5-06 3 108682411 108682411 C T MORC1 Silent p.R883R 0.48 TCGA-D3-A1Q5-06 3 122629827 122629827 G A SEMA5B Silent p.L1107L 0.50 TCGA-D3-A1Q5-06 3 124237289 124237289 C T KALRN Missense_Mutation p.P1658S 0.48 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-D3-A1Q5-06 3 131268915 131268915 C T CPNE4 Missense_Mutation p.G393E 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 3 140397412 140397412 C T TRIM42 Missense_Mutation p.S114F 0.37 tolerated(0.08) benign(0.01) TCGA-D3-A1Q5-06 3 140401671 140401671 C T TRIM42 Missense_Mutation p.L237F 0.38 tolerated(0.13) benign(0.002) TCGA-D3-A1Q5-06 3 140407150 140407150 C T TRIM42 Silent p.F542F 0.41 TCGA-D3-A1Q5-06 3 151082983 151082983 G A MED12L Silent p.Q1023Q 0.37 TCGA-D3-A1Q5-06 3 164758861 164758861 C A SI Missense_Mutation p.G676W 0.37 deleterious(0) possibly_damaging(0.834) TCGA-D3-A1Q5-06 3 168833184 168833184 C T MECOM Missense_Mutation p.D703N 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 3 183908981 183908981 C T ABCF3 Missense_Mutation p.P503S 0.44 tolerated(0.13) benign(0.015) TCGA-D3-A1Q5-06 3 186915444 186915444 G A RTP1 Silent p.K47K 0.50 TCGA-D3-A1Q5-06 3 25686832 25686832 G A TOP2B Missense_Mutation p.R62C 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 3 36570349 36570349 C T STAC Nonsense_Mutation p.Q328* 0.23 TCGA-D3-A1Q5-06 3 38793874 38793874 C T SCN10A Missense_Mutation p.E531K 0.48 tolerated(0.06) benign(0.01) TCGA-D3-A1Q5-06 3 38962579 38962579 G A SCN11A Missense_Mutation p.P294S 0.41 tolerated(1) benign(0) TCGA-D3-A1Q5-06 3 41275119 41275119 T G CTNNB1 Missense_Mutation p.C429G 0.46 deleterious(0) probably_damaging(0.989) TCGA-D3-A1Q5-06 3 45127559 45127559 C T CDCP1 Silent p.K694K 0.32 TCGA-D3-A1Q5-06 3 48956273 48956273 C T ARIH2OS Missense_Mutation p.E104K 0.57 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-D3-A1Q5-06 3 48956274 48956274 C T ARIH2OS Silent p.P103P 0.57 TCGA-D3-A1Q5-06 3 49049481 49049481 G A WDR6 Missense_Mutation p.E202K 0.52 tolerated(0.06) probably_damaging(0.936) TCGA-D3-A1Q5-06 3 52380754 52380754 C T DNAH1 Silent p.V641V 0.67 TCGA-D3-A1Q5-06 3 52842642 52842642 G A ITIH3 Missense_Mutation p.G873E 0.43 deleterious(0) probably_damaging(0.989) TCGA-D3-A1Q5-06 4 109753581 109753581 A C COL25A1 Missense_Mutation p.D555E 0.26 tolerated(0.28) benign(0.262) TCGA-D3-A1Q5-06 4 115856487 115856487 G A NDST4 Missense_Mutation p.L471F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q5-06 4 115998003 115998003 C T NDST4 Missense_Mutation p.E64K 0.64 tolerated(0.37) benign(0.092) TCGA-D3-A1Q5-06 4 126237755 126237755 C G FAT4 Silent p.T63T 0.30 TCGA-D3-A1Q5-06 4 139100447 139100447 G A SLC7A11 Silent p.I456I 0.32 TCGA-D3-A1Q5-06 4 158142819 158142819 G A GRIA2 Missense_Mutation p.G30E 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q5-06 4 164392992 164392992 G A TKTL2 3'UTR 0.18 TCGA-D3-A1Q5-06 4 164394719 164394719 C T TKTL2 Silent p.T56T 0.27 TCGA-D3-A1Q5-06 4 169279257 169279257 G A DDX60L 3'UTR 0.19 TCGA-D3-A1Q5-06 4 40440254 40440254 G A RBM47 Silent p.I219I 0.27 TCGA-D3-A1Q5-06 4 47559837 47559837 C T ATP10D Missense_Mutation p.P661S 0.21 tolerated(1) benign(0.002) TCGA-D3-A1Q5-06 4 49046862 49046862 C T CWH43 Silent p.I621I 0.37 TCGA-D3-A1Q5-06 4 57777248 57777248 G A REST Silent p.E148E 0.20 TCGA-D3-A1Q5-06 4 57881716 57881716 G A POLR2B Missense_Mutation p.D617N 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 4 72215630 72215630 T G SLC4A4 Missense_Mutation p.W131G 0.29 deleterious(0) probably_damaging(0.988) TCGA-D3-A1Q5-06 4 83745800 83745800 T A SEC31A Missense_Mutation p.I1107F 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q5-06 4 84519860 84519860 C T AGPAT9 Silent p.L397L 0.16 TCGA-D3-A1Q5-06 4 8608525 8608525 G A CPZ Missense_Mutation p.R323Q 0.29 deleterious(0) probably_damaging(0.987) TCGA-D3-A1Q5-06 4 94138038 94138038 G A GRID2 Silent p.K313K 0.27 TCGA-D3-A1Q5-06 4 995790 995790 C T IDUA Silent p.S271S 0.30 TCGA-D3-A1Q5-06 5 11199635 11199635 T A CTNND2 Missense_Mutation p.N634Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q5-06 5 113740269 113740269 C T KCNN2 Silent p.A239A 0.29 TCGA-D3-A1Q5-06 5 128956429 128956429 G A ADAMTS19 Missense_Mutation p.E527K 0.26 deleterious(0.04) benign(0.217) TCGA-D3-A1Q5-06 5 136314410 136314410 C T SPOCK1 Missense_Mutation p.R418Q 0.34 deleterious_low_confidence(0.02) probably_damaging(0.941) TCGA-D3-A1Q5-06 5 13766162 13766162 C T DNAH5 Missense_Mutation p.E3342K 0.23 benign(0.01) TCGA-D3-A1Q5-06 5 13809266 13809266 G T DNAH5 Missense_Mutation p.Q2547K 0.25 benign(0.042) TCGA-D3-A1Q5-06 5 13830726 13830726 C T DNAH5 Missense_Mutation p.G2014E 0.19 probably_damaging(0.982) TCGA-D3-A1Q5-06 5 140264124 140264124 G T PCDHA13 Missense_Mutation p.R757S 0.42 deleterious_low_confidence(0.04) benign(0.032) TCGA-D3-A1Q5-06 5 140482058 140482058 G A PCDHB3 Missense_Mutation p.A609T 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-D3-A1Q5-06 5 140627062 140627062 G A PCDHB15 Missense_Mutation p.R639K 0.37 tolerated_low_confidence(0.07) benign(0.193) TCGA-D3-A1Q5-06 5 140792874 140792874 G A PCDHGA10 Silent p.E44E 0.35 TCGA-D3-A1Q5-06 5 14488282 14488282 C T TRIO Silent p.R2515R 0.23 TCGA-D3-A1Q5-06 5 146752852 146752852 C T STK32A Missense_Mutation p.P300S 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 5 148407303 148407303 T C SH3TC2 Silent p.G664G 0.32 TCGA-D3-A1Q5-06 5 149441394 149441394 G A CSF1R Missense_Mutation p.R549C 0.28 deleterious(0) possibly_damaging(0.807) TCGA-D3-A1Q5-06 5 149826385 149826385 G A RPS14 Silent p.L97L 0.33 TCGA-D3-A1Q5-06 5 150925305 150925305 C T FAT2 Missense_Mutation p.E1795K 0.25 benign(0.375) TCGA-D3-A1Q5-06 5 161117306 161117306 C T GABRA6 Missense_Mutation p.S258F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 5 161117307 161117307 C T GABRA6 Silent p.S258S 0.25 TCGA-D3-A1Q5-06 5 161324352 161324352 G A GABRA1 Missense_Mutation p.G432E 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A1Q5-06 5 161580117 161580117 C A GABRG2 Missense_Mutation p.R431S 0.31 tolerated(0.21) possibly_damaging(0.705) TCGA-D3-A1Q5-06 5 167420093 167420093 G A TENM2 Silent p.L364L 0.39 TCGA-D3-A1Q5-06 5 169141072 169141072 C A DOCK2 Missense_Mutation p.T567N 0.26 tolerated(0.49) benign(0.008) TCGA-D3-A1Q5-06 5 172447304 172447304 C T ATP6V0E1 Silent p.T72T 0.16 TCGA-D3-A1Q5-06 5 176799073 176799073 C T RGS14 Silent p.L566L 0.34 TCGA-D3-A1Q5-06 5 179538465 179538465 C T RASGEF1C Missense_Mutation p.S432N 0.62 tolerated(0.32) benign(0.081) TCGA-D3-A1Q5-06 5 32088673 32088673 G A PDZD2 Missense_Mutation p.E1707K 0.18 tolerated(0.49) benign(0.002) TCGA-D3-A1Q5-06 5 34024066 34024066 C T C1QTNF3 Missense_Mutation p.E250K 0.27 tolerated(0.22) possibly_damaging(0.596) TCGA-D3-A1Q5-06 5 40843796 40843796 G A CARD6 Missense_Mutation p.E276K 0.20 tolerated(0.22) benign(0.266) TCGA-D3-A1Q5-06 5 477530 477530 G A SLC9A3 Silent p.I559I 0.27 TCGA-D3-A1Q5-06 5 80548642 80548642 G A CKMT2 Missense_Mutation p.G94E 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 5 82937176 82937176 C T HAPLN1 3'UTR 0.40 TCGA-D3-A1Q5-06 6 10751386 10751404 GCAGGGCTGCTCTTCGGCA - TMEM14B Frame_Shift_Del p.A41Vfs*2 0.21 TCGA-D3-A1Q5-06 6 10961744 10961744 G A SYCP2L Silent p.G789G 0.29 TCGA-D3-A1Q5-06 6 12294286 12294286 G A EDN1 Missense_Mutation p.D116N 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 6 129465130 129465130 C T LAMA2 Missense_Mutation p.R242C 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 6 132201156 132201156 C T ENPP1 Silent p.S694S 0.41 TCGA-D3-A1Q5-06 6 134212988 134212988 C T TCF21 3'UTR 0.33 TCGA-D3-A1Q5-06 6 144780119 144780119 C T UTRN Missense_Mutation p.S833F 0.34 tolerated(0.13) benign(0.003) TCGA-D3-A1Q5-06 6 153019124 153019124 C T MYCT1 Silent p.F29F 0.50 TCGA-D3-A1Q5-06 6 1612372 1612372 C T FOXC1 3'UTR 0.22 TCGA-D3-A1Q5-06 6 20490632 20490632 C T E2F3 Missense_Mutation p.P457S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D3-A1Q5-06 6 24145856 24145856 C T NRSN1 Silent p.I90I 0.29 TCGA-D3-A1Q5-06 6 24357738 24357738 G A DCDC2 Nonsense_Mutation p.Q81* 0.23 TCGA-D3-A1Q5-06 6 29429651 29429651 G C OR2H1 Missense_Mutation p.L35F 0.32 deleterious(0.03) possibly_damaging(0.646) TCGA-D3-A1Q5-06 6 30864588 30864588 C T DDR1 Silent p.F605F 0.38 TCGA-D3-A1Q5-06 6 31236844 31236844 C A HLA-C 3'UTR 0.62 TCGA-D3-A1Q5-06 6 36884343 36884343 G T C6orf89 Missense_Mutation p.G280V 0.33 deleterious(0) probably_damaging(0.929) TCGA-D3-A1Q5-06 6 36983600 36983600 C T FGD2 Silent p.F362F 0.23 TCGA-D3-A1Q5-06 6 38790634 38790634 C T DNAH8 Missense_Mutation p.P965S 0.14 benign(0.001) TCGA-D3-A1Q5-06 6 43639608 43639608 G A MRPS18A Missense_Mutation p.P161L 0.38 tolerated(0.05) probably_damaging(0.994) TCGA-D3-A1Q5-06 6 70840095 70840095 G C COL19A1 Missense_Mutation p.G455R 0.33 tolerated(0.53) benign(0.021) TCGA-D3-A1Q5-06 6 70886412 70886412 G A COL19A1 Missense_Mutation p.G875R 0.89 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 6 75884949 75884949 C T COL12A1 Missense_Mutation p.G839R 0.40 probably_damaging(1) TCGA-D3-A1Q5-06 6 86238080 86238080 C A SNX14 Missense_Mutation p.G632V 0.93 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q5-06 6 89614448 89614448 C T RNGTT Missense_Mutation p.E224K 0.86 tolerated(0.17) benign(0.068) TCGA-D3-A1Q5-06 6 96651024 96651024 G A FUT9 Intron 0.37 TCGA-D3-A1Q5-06 6 96651671 96651671 G A FUT9 Missense_Mutation p.E214K 0.83 tolerated(0.87) benign(0.03) TCGA-D3-A1Q5-06 7 11418914 11418914 G A THSD7A Intron 0.75 TCGA-D3-A1Q5-06 7 122342756 122342756 C T RNF148 Missense_Mutation p.G17R 0.24 tolerated(0.57) benign(0) TCGA-D3-A1Q5-06 7 124503644 124503644 T A POT1 Silent p.A102A 0.19 TCGA-D3-A1Q5-06 7 124532343 124532343 G A POT1 Missense_Mutation p.P34L 0.23 tolerated(0.06) possibly_damaging(0.661) TCGA-D3-A1Q5-06 7 128482973 128482973 G A FLNC Missense_Mutation p.G839S 0.12 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A1Q5-06 7 131844352 131844352 C T PLXNA4 Missense_Mutation p.E1514K 0.20 deleterious(0.01) possibly_damaging(0.476) TCGA-D3-A1Q5-06 7 137282621 137282621 C T DGKI Missense_Mutation p.R428Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 7 139724543 139724543 C A PARP12 Missense_Mutation p.E641D 0.19 tolerated(0.44) benign(0.002) TCGA-D3-A1Q5-06 7 140045771 140045771 C T SLC37A3 Splice_Site p.X342_splice 0.34 TCGA-D3-A1Q5-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.66 deleterious(0) probably_damaging(0.967) TCGA-D3-A1Q5-06 7 143748157 143748157 C T OR2A5 Silent p.I221I 0.21 TCGA-D3-A1Q5-06 7 148112736 148112736 G A CNTNAP2 3'UTR 0.74 TCGA-D3-A1Q5-06 7 150416140 150416140 G A GIMAP1 Missense_Mutation p.G2E 0.23 tolerated(0.11) probably_damaging(0.942) TCGA-D3-A1Q5-06 7 16649314 16649314 G A ANKMY2 Missense_Mutation p.P275S 0.24 deleterious(0) probably_damaging(0.992) TCGA-D3-A1Q5-06 7 23808778 23808778 C T STK31 Silent p.F527F 0.68 TCGA-D3-A1Q5-06 7 24329122 24329122 G A NPY Missense_Mutation p.G65R 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 7 27238799 27238799 G A HOXA13 Missense_Mutation p.H300Y 0.15 deleterious(0.04) possibly_damaging(0.701) TCGA-D3-A1Q5-06 7 27570860 27570860 G A HIBADH Missense_Mutation p.P268L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 7 30795182 30795182 C T INMT Silent p.A169A 0.21 TCGA-D3-A1Q5-06 7 31692417 31692417 G A CCDC129 Intron 0.22 TCGA-D3-A1Q5-06 7 44561418 44561418 G A NPC1L1 Missense_Mutation p.P949L 0.18 deleterious(0) possibly_damaging(0.616) TCGA-D3-A1Q5-06 7 48547537 48547537 C T ABCA13 Silent p.S4472S 0.29 TCGA-D3-A1Q5-06 7 6838115 6838115 G A RSPH10B2 Missense_Mutation p.E852K 0.11 deleterious(0) possibly_damaging(0.687) TCGA-D3-A1Q5-06 7 72209518 72209518 G A TYW1B 3'UTR 0.21 TCGA-D3-A1Q5-06 7 73467555 73467555 G A ELN Missense_Mutation p.G338R 0.14 unknown(0) TCGA-D3-A1Q5-06 7 73973268 73973268 G A GTF2IRD1 Missense_Mutation p.E761K 0.19 deleterious(0.03) possibly_damaging(0.685) TCGA-D3-A1Q5-06 7 76126703 76126703 C T DTX2 Silent p.S353S 0.08 TCGA-D3-A1Q5-06 7 81626554 81626554 G T CACNA2D1 Missense_Mutation p.Q535K 0.24 tolerated(0.25) benign(0.341) TCGA-D3-A1Q5-06 7 86493639 86493639 G A GRM3 Missense_Mutation p.E870K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-D3-A1Q5-06 7 92733358 92733358 G A SAMD9 Nonsense_Mutation p.R685* 0.16 TCGA-D3-A1Q5-06 7 92844842 92844842 G A HEPACAM2 Missense_Mutation p.S196F 0.65 tolerated(0.3) possibly_damaging(0.873) TCGA-D3-A1Q5-06 7 94059623 94059623 C T COL1A2 Missense_Mutation p.P1340L 0.16 unknown(0) TCGA-D3-A1Q5-06 7 99355805 99355805 G A CYP3A4 Missense_Mutation p.P488L 0.65 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q5-06 8 125551344 125551344 C T TATDN1 5'Flank 0.24 TCGA-D3-A1Q5-06 8 23179780 23179780 G A LOXL2 Missense_Mutation p.H389Y 0.32 tolerated(0.07) possibly_damaging(0.846) TCGA-D3-A1Q5-06 8 24151661 24151661 G A ADAM28 5'UTR 0.31 TCGA-D3-A1Q5-06 8 43173699 43173699 C T POTEA RNA 0.61 TCGA-D3-A1Q5-06 8 51442761 51442761 G A SNTG1 Missense_Mutation p.G164D 0.21 tolerated(0.23) benign(0.342) TCGA-D3-A1Q5-06 8 73848253 73848253 G A KCNB2 Silent p.T221T 0.28 TCGA-D3-A1Q5-06 8 77767910 77767910 C T ZFHX4 Missense_Mutation p.P2918L 0.48 benign(0.12) TCGA-D3-A1Q5-06 8 86042232 86042232 C T LRRCC1 Nonsense_Mutation p.R569* 0.30 TCGA-D3-A1Q5-06 8 92378861 92378861 G A SLC26A7 Silent p.L514L 0.32 TCGA-D3-A1Q5-06 8 97157741 97157741 G A GDF6 Missense_Mutation p.H140Y 0.20 tolerated(0.8) possibly_damaging(0.699) TCGA-D3-A1Q5-06 9 137779165 137779165 G A FCN2 Silent p.G282G 0.36 TCGA-D3-A1Q5-06 9 139413057 139413057 G A NOTCH1 Missense_Mutation p.P362L 0.89 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A1Q5-06 9 139651001 139651001 C T LCN8 Missense_Mutation p.D67N 0.36 tolerated(0.23) benign(0.027) TCGA-D3-A1Q5-06 9 139749489 139749489 G A MAMDC4 Missense_Mutation p.R375Q 0.62 deleterious(0.01) benign(0.141) TCGA-D3-A1Q5-06 9 139749490 139749490 G A MAMDC4 Silent p.R375R 0.62 TCGA-D3-A1Q5-06 9 140846797 140846797 C T CACNA1B Silent p.F346F 0.51 TCGA-D3-A1Q5-06 9 36966555 36966555 C T PAX5 Silent p.K257K 0.13 TCGA-D3-A1Q5-06 X 107911599 107911599 C T COL4A5 Missense_Mutation p.P1219S 1.00 unknown(0) TCGA-D3-A1Q5-06 X 111020194 111020194 C T TRPC5 Missense_Mutation p.V757M 0.44 tolerated(0.12) possibly_damaging(0.542) TCGA-D3-A1Q5-06 X 136113174 136113174 C T GPR101 Silent p.R220R 0.37 TCGA-D3-A1Q5-06 X 152773842 152773842 C T BGN Missense_Mutation p.P349L 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q5-06 X 152807134 152807134 G A ATP2B3 Silent p.G138G 0.86 TCGA-D3-A1Q5-06 X 154014501 154014501 G A MPP1 Missense_Mutation p.P219S 0.89 deleterious(0) probably_damaging(1) TCGA-D3-A1Q5-06 X 154197612 154197612 G T F8 Missense_Mutation p.Q335K 0.40 tolerated(0.12) benign(0.03) TCGA-D3-A1Q5-06 X 18674878 18674878 C T RS1 Missense_Mutation p.D27N 0.44 tolerated_low_confidence(0.07) benign(0.072) TCGA-D3-A1Q5-06 X 18674879 18674879 C T RS1 Splice_Site p.X27_splice 0.45 TCGA-D3-A1Q5-06 X 70389910 70389910 C T NLGN3 Missense_Mutation p.T837I 0.47 deleterious_low_confidence(0) benign(0.342) TCGA-D3-A1Q5-06 X 70511790 70511790 C T NONO Missense_Mutation p.H106Y 0.97 deleterious(0) benign(0.149) TCGA-D3-A1Q5-06 X 70516739 70516739 C T NONO Missense_Mutation p.S262F 0.44 deleterious(0) probably_damaging(0.986) TCGA-D3-A1Q5-06 X 71349568 71349568 G A RGAG4 3'UTR 0.50 TCGA-D3-A1Q5-06 Y 15447956 15447956 G T UTY Missense_Mutation p.P677H 0.10 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-D3-A1Q6-06 10 103922103 103922103 G A NOLC1 3'UTR 0.55 TCGA-D3-A1Q6-06 10 103922104 103922104 G C NOLC1 3'UTR 0.52 TCGA-D3-A1Q6-06 10 103922105 103922105 T G NOLC1 3'UTR 0.52 TCGA-D3-A1Q6-06 10 118327281 118327281 G A PNLIP Missense_Mutation p.E457K 0.40 tolerated(0.11) benign(0.006) TCGA-D3-A1Q6-06 10 124096113 124096113 C T BTBD16 Silent p.A456A 0.43 TCGA-D3-A1Q6-06 10 124096114 124096114 C T BTBD16 Silent p.L457L 0.43 TCGA-D3-A1Q6-06 10 126681771 126681771 C T CTBP2 Missense_Mutation p.G887S 0.53 deleterious(0.01) benign(0.382) TCGA-D3-A1Q6-06 10 134626349 134626349 C T TTC40 Missense_Mutation p.G2481R 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 10 15647736 15647736 G A ITGA8 Silent p.L653L 0.20 TCGA-D3-A1Q6-06 10 18242235 18242235 C T SLC39A12 Silent p.S10S 0.34 TCGA-D3-A1Q6-06 10 18690890 18690890 C T CACNB2 Missense_Mutation p.S84F 0.33 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q6-06 10 18803206 18803206 G A CACNB2 Missense_Mutation p.D238N 0.13 tolerated(0.09) possibly_damaging(0.455) TCGA-D3-A1Q6-06 10 21074722 21074722 C T NEBL Missense_Mutation p.G1000E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 10 21108375 21108375 C T NEBL Missense_Mutation p.R678Q 0.13 tolerated(0.08) benign(0.442) TCGA-D3-A1Q6-06 10 24762620 24762620 A G KIAA1217 Missense_Mutation p.N437S 0.14 tolerated(0.42) benign(0.026) TCGA-D3-A1Q6-06 10 24810711 24810711 G A KIAA1217 Missense_Mutation p.G770E 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 10 26463297 26463297 G A MYO3A Silent p.K1368K 0.22 TCGA-D3-A1Q6-06 10 27687287 27687287 G A PTCHD3 Missense_Mutation p.S747F 0.37 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q6-06 10 32860822 32860822 G A C10ORF68 Intron 0.50 TCGA-D3-A1Q6-06 10 34601238 34601238 C A PARD3 Intron 0.36 TCGA-D3-A1Q6-06 10 46969437 46969437 C T SYT15 Silent p.V8V 0.32 TCGA-D3-A1Q6-06 10 48389018 48389018 C T RBP3 Silent p.E620E 0.65 TCGA-D3-A1Q6-06 10 48389692 48389692 G A RBP3 Missense_Mutation p.P396S 0.41 tolerated(1) benign(0.01) TCGA-D3-A1Q6-06 10 52834523 52834523 A T PRKG1 Missense_Mutation p.Q58L 0.29 tolerated(0.34) benign(0) TCGA-D3-A1Q6-06 10 55581882 55581882 C T PCDH15 Silent p.T1870T 0.53 TCGA-D3-A1Q6-06 10 55943312 55943312 G A PCDH15 Silent p.I494I 0.46 TCGA-D3-A1Q6-06 10 61959950 61959950 G A ANK3 Silent p.S476S 0.57 TCGA-D3-A1Q6-06 10 64573920 64573920 C T EGR2 Missense_Mutation p.D160N 0.44 tolerated(0.08) benign(0.061) TCGA-D3-A1Q6-06 10 70645727 70645727 G A STOX1 Silent p.V725V 0.39 TCGA-D3-A1Q6-06 10 70945777 70945777 G A SUPV3L1 Silent p.K102K 0.43 TCGA-D3-A1Q6-06 10 74100779 74100779 G A DNAJB12 Missense_Mutation p.L237F 0.31 deleterious(0) probably_damaging(0.991) TCGA-D3-A1Q6-06 10 75082767 75082767 C T TTC18 Missense_Mutation p.G359E 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 10 85936235 85936235 G A C10orf99 Splice_Site p.X24_splice 0.38 TCGA-D3-A1Q6-06 10 86007474 86007474 C T RGR Silent p.A69A 0.19 TCGA-D3-A1Q6-06 10 96540305 96540305 G A CYP2C19 Silent p.V177V 0.42 TCGA-D3-A1Q6-06 10 98408470 98408470 G A PIK3AP1 Silent p.T377T 0.40 TCGA-D3-A1Q6-06 11 103908773 103908773 G A DDI1 3'UTR 0.42 TCGA-D3-A1Q6-06 11 10626044 10626044 G A MRVI1 Silent p.L551L 0.21 TCGA-D3-A1Q6-06 11 107197668 107197668 G A CWF19L2 Missense_Mutation p.P885S 0.24 tolerated(0.07) possibly_damaging(0.596) TCGA-D3-A1Q6-06 11 113103477 113103477 A G NCAM1 Missense_Mutation p.N537S 0.15 deleterious(0) benign(0.357) TCGA-D3-A1Q6-06 11 113857496 113857496 C - HTR3A Frame_Shift_Del p.S329Pfs*27 0.29 TCGA-D3-A1Q6-06 11 113934493 113934493 C T ZBTB16 Silent p.F157F 0.35 TCGA-D3-A1Q6-06 11 114118013 114118013 C T ZBTB16 Missense_Mutation p.P573L 0.16 deleterious(0) probably_damaging(0.979) TCGA-D3-A1Q6-06 11 117321317 117321317 C T DSCAML1 Missense_Mutation p.G1279E 0.28 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q6-06 11 119054038 119054038 C T NLRX1 Silent p.L940L 0.16 TCGA-D3-A1Q6-06 11 121391521 121391521 C T SORL1 Missense_Mutation p.P456L 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 11 122775005 122775005 C T C11orf63 Silent p.F239F 0.23 TCGA-D3-A1Q6-06 11 123909436 123909436 G A OR10G7 Silent p.I91I 0.21 TCGA-D3-A1Q6-06 11 124180060 124180060 G A OR8D1 Silent p.I201I 0.67 TCGA-D3-A1Q6-06 11 1651419 1651419 G A KRTAP5-5 Missense_Mutation p.G117R 0.41 deleterious_low_confidence(0) unknown(0) TCGA-D3-A1Q6-06 11 17416776 17416776 C A ABCC8 Nonsense_Mutation p.E1452* 0.38 TCGA-D3-A1Q6-06 11 17741473 17741473 G A MYOD1 Silent p.P48P 0.38 TCGA-D3-A1Q6-06 11 18195816 18195816 A G MRGPRX4 3'UTR 0.39 TCGA-D3-A1Q6-06 11 18955494 18955494 G A MRGPRX1 Nonsense_Mutation p.Q280* 0.16 TCGA-D3-A1Q6-06 11 20673992 20673992 G A SLC6A5 Missense_Mutation p.R743K 0.15 tolerated(0.55) benign(0) TCGA-D3-A1Q6-06 11 2608861 2608861 G A KCNQ1 Missense_Mutation p.R397Q 0.32 tolerated(0.09) benign(0.203) TCGA-D3-A1Q6-06 11 2608862 2608862 G A KCNQ1 Silent p.R397R 0.33 TCGA-D3-A1Q6-06 11 26656579 26656579 A T ANO3 Nonsense_Mutation p.K669* 0.16 TCGA-D3-A1Q6-06 11 26656580 26656580 A T ANO3 Missense_Mutation p.K669I 0.15 tolerated(0.06) benign(0.367) TCGA-D3-A1Q6-06 11 26664814 26664814 C T ANO3 Silent p.I787I 0.13 TCGA-D3-A1Q6-06 11 34181501 34181501 C T ABTB2 Missense_Mutation p.G853E 0.36 deleterious(0) possibly_damaging(0.908) TCGA-D3-A1Q6-06 11 36614842 36614842 C T RAG2 Missense_Mutation p.E293K 0.36 deleterious(0.04) benign(0.02) TCGA-D3-A1Q6-06 11 3797179 3797179 G A NUP98 Missense_Mutation p.T143I 0.39 deleterious(0) probably_damaging(0.982) TCGA-D3-A1Q6-06 11 40136457 40136457 C T LRRC4C Missense_Mutation p.M462I 0.32 tolerated_low_confidence(0.37) benign(0) TCGA-D3-A1Q6-06 11 4598979 4598979 C T C11orf40 Silent p.G24G 0.33 TCGA-D3-A1Q6-06 11 46637731 46637731 G A HARBI1 Silent p.H19H 0.35 TCGA-D3-A1Q6-06 11 4674078 4674078 C T OR51E1 Missense_Mutation p.H108Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 11 47376925 47376925 C T SPI1 Silent p.K223K 0.23 TCGA-D3-A1Q6-06 11 4843236 4843236 G A OR51F2 Silent p.R207R 0.25 TCGA-D3-A1Q6-06 11 49974506 49974506 G A OR4C13 Missense_Mutation p.D178N 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A1Q6-06 11 49974618 49974618 C T OR4C13 Missense_Mutation p.S215F 0.20 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-D3-A1Q6-06 11 5068545 5068545 C T OR52J3 Nonsense_Mutation p.R264* 0.33 TCGA-D3-A1Q6-06 11 5269630 5269630 C T HBG1 Missense_Mutation p.V135M 0.45 tolerated(0.11) benign(0.115) TCGA-D3-A1Q6-06 11 5364200 5364200 G A OR51B5 Silent p.L185L 0.43 TCGA-D3-A1Q6-06 11 55111247 55111247 T C OR4A16 Missense_Mutation p.Y191H 0.22 tolerated_low_confidence(0.25) benign(0.25) TCGA-D3-A1Q6-06 11 55322792 55322792 C T OR4C15 Missense_Mutation p.P337L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 11 55541254 55541254 C T OR5D13 Missense_Mutation p.T114I 0.24 tolerated(0.13) benign(0.032) TCGA-D3-A1Q6-06 11 55659157 55659157 C T TRIM51 3'UTR 0.46 TCGA-D3-A1Q6-06 11 5566642 5566642 G A OR52H1 Missense_Mutation p.P38S 0.12 deleterious(0) possibly_damaging(0.715) TCGA-D3-A1Q6-06 11 55761558 55761558 G A OR5F1 Missense_Mutation p.P182S 0.12 tolerated(0.06) possibly_damaging(0.483) TCGA-D3-A1Q6-06 11 55861194 55861194 C T OR8I2 Silent p.S137S 0.26 TCGA-D3-A1Q6-06 11 56043953 56043953 C T OR5T1 Missense_Mutation p.S280L 0.32 tolerated(1) benign(0.002) TCGA-D3-A1Q6-06 11 56380844 56380844 C T OR5M1 Missense_Mutation p.M45I 0.41 tolerated(0.09) benign(0.005) TCGA-D3-A1Q6-06 11 57145277 57145277 C T PRG3 Silent p.G180G 0.35 TCGA-D3-A1Q6-06 11 57252616 57252616 C T SLC43A1 Missense_Mutation p.G545R 0.27 tolerated(0.55) benign(0.032) TCGA-D3-A1Q6-06 11 5799130 5799130 C T OR52N5 Silent p.K245K 0.15 TCGA-D3-A1Q6-06 11 5809545 5809545 G A OR52N1 Missense_Mutation p.L168F 0.17 deleterious(0.03) benign(0.424) TCGA-D3-A1Q6-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A1Q6-06 11 58477282 58477282 G A GLYAT Missense_Mutation p.P283L 0.34 tolerated(0.51) benign(0.013) TCGA-D3-A1Q6-06 11 58607023 58607023 G A GLYATL2 Silent p.I21I 0.40 TCGA-D3-A1Q6-06 11 6023540 6023540 A C OR56A4 Missense_Mutation p.V280G 0.46 deleterious(0) probably_damaging(0.988) TCGA-D3-A1Q6-06 11 60699183 60699183 C T TMEM132A Silent p.L348L 0.22 TCGA-D3-A1Q6-06 11 6129417 6129417 C T OR56B4 Nonsense_Mutation p.Q137* 0.17 TCGA-D3-A1Q6-06 11 61505224 61505224 C T DAGLA Missense_Mutation p.P527L 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 11 62288329 62288329 G A AHNAK Silent p.S4520S 0.10 TCGA-D3-A1Q6-06 11 62362538 62362538 G A MTA2 Silent p.S496S 0.20 TCGA-D3-A1Q6-06 11 62376896 62376896 G A EML3 Missense_Mutation p.P230S 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q6-06 11 62931309 62931309 C T SLC22A25 Missense_Mutation p.S544N 0.11 tolerated(0.18) benign(0.004) TCGA-D3-A1Q6-06 11 63586056 63586056 C T C11orf84 Missense_Mutation p.P222L 0.38 tolerated(0.75) benign(0.012) TCGA-D3-A1Q6-06 11 63978206 63978206 C T FERMT3 Missense_Mutation p.P95L 0.34 deleterious(0) benign(0.342) TCGA-D3-A1Q6-06 11 63978207 63978207 C T FERMT3 Silent p.P95P 0.33 TCGA-D3-A1Q6-06 11 64418795 64418795 G A NRXN2 Silent p.A950A 0.40 TCGA-D3-A1Q6-06 11 65123330 65123330 G A TIGD3 Silent p.K17K 0.34 TCGA-D3-A1Q6-06 11 65375744 65375744 G A MAP3K11 Silent p.V305V 0.41 TCGA-D3-A1Q6-06 11 65386245 65386245 C T PCNXL3 Missense_Mutation p.P471L 0.39 deleterious(0.02) benign(0.283) TCGA-D3-A1Q6-06 11 65635849 65635849 G A EFEMP2 Silent p.A297A 0.40 TCGA-D3-A1Q6-06 11 66807362 66807362 C T SYT12 Silent p.T103T 0.17 TCGA-D3-A1Q6-06 11 67172875 67172875 G A TBC1D10C Silent p.K86K 0.17 TCGA-D3-A1Q6-06 11 67267631 67267631 G A PITPNM1 Missense_Mutation p.P301L 0.21 deleterious(0.03) benign(0.343) TCGA-D3-A1Q6-06 11 6816561 6816561 G A OR6A2 Missense_Mutation p.R127C 0.38 deleterious(0.02) benign(0.052) TCGA-D3-A1Q6-06 11 68478367 68478367 C T MTL5 Missense_Mutation p.G437R 0.40 tolerated(0.2) benign(0.154) TCGA-D3-A1Q6-06 11 68542821 68542821 G A CPT1A Missense_Mutation p.P513L 0.13 deleterious(0.04) benign(0.187) TCGA-D3-A1Q6-06 11 68702856 68702856 C A IGHMBP2 Silent p.A574A 0.31 TCGA-D3-A1Q6-06 11 7111178 7111178 G A RBMXL2 Missense_Mutation p.R276K 0.24 tolerated(0.09) benign(0) TCGA-D3-A1Q6-06 11 71238539 71238539 G A KRTAP5-7 Missense_Mutation p.G65R 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A1Q6-06 11 72409131 72409131 G A ARAP1 Silent p.A854A 0.42 TCGA-D3-A1Q6-06 11 73068123 73068123 C T ARHGEF17 Silent p.I1315I 0.28 TCGA-D3-A1Q6-06 11 73979287 73979287 C T P4HA3 Splice_Site p.X490_splice 0.50 TCGA-D3-A1Q6-06 11 76234235 76234235 C T C11orf30 Missense_Mutation p.S574F 0.18 deleterious(0) probably_damaging(0.962) TCGA-D3-A1Q6-06 11 78380301 78380301 G A TENM4 Silent p.I2363I 0.34 TCGA-D3-A1Q6-06 11 7950073 7950073 A G OR10A6 Missense_Mutation p.I46T 0.19 deleterious(0.03) benign(0.078) TCGA-D3-A1Q6-06 11 7981841 7981841 C T NLRP10 Missense_Mutation p.G440S 0.14 deleterious(0.04) benign(0.367) TCGA-D3-A1Q6-06 11 84028298 84028298 C T DLG2 Intron 0.40 TCGA-D3-A1Q6-06 11 9055230 9055230 G A SCUBE2 Intron 0.16 TCGA-D3-A1Q6-06 11 92086160 92086160 G A FAT3 Silent p.A294A 0.15 TCGA-D3-A1Q6-06 12 100657564 100657564 C T DEPDC4 Missense_Mutation p.D89N 0.42 tolerated(0.3) benign(0.216) TCGA-D3-A1Q6-06 12 100928737 100928737 C T NR1H4 Missense_Mutation p.T233I 0.57 tolerated(0.22) benign(0.003) TCGA-D3-A1Q6-06 12 104078786 104078786 C T STAB2 Missense_Mutation p.S974L 0.43 tolerated(0.09) benign(0.137) TCGA-D3-A1Q6-06 12 110377017 110377017 C A GIT2 Missense_Mutation p.E589D 0.15 tolerated(0.85) benign(0.02) TCGA-D3-A1Q6-06 12 112481007 112481007 G A NAA25 Silent p.F753F 0.20 TCGA-D3-A1Q6-06 12 112616802 112616802 C A HECTD4 Missense_Mutation p.V3620L 0.22 possibly_damaging(0.777) TCGA-D3-A1Q6-06 12 113599084 113599084 G A DDX54 Missense_Mutation p.R802C 0.44 tolerated(0.18) possibly_damaging(0.828) TCGA-D3-A1Q6-06 12 114841557 114841557 C T TBX5 Silent p.Q49Q 0.44 TCGA-D3-A1Q6-06 12 117768166 117768166 C T NOS1 Missense_Mutation p.G237R 0.38 tolerated_low_confidence(0.14) benign(0.044) TCGA-D3-A1Q6-06 12 121426788 121426788 C A HNF1A Missense_Mutation p.A160D 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 12 124268613 124268613 C T DNAH10 Silent p.S312S 0.40 TCGA-D3-A1Q6-06 12 125834576 125834576 G A TMEM132B Missense_Mutation p.G211R 0.18 tolerated(0.06) benign(0.428) TCGA-D3-A1Q6-06 12 125834577 125834577 G A TMEM132B Missense_Mutation p.G211E 0.18 tolerated(1) benign(0.009) TCGA-D3-A1Q6-06 12 126138453 126138453 G A TMEM132B Missense_Mutation p.D812N 0.47 tolerated(1) benign(0.234) TCGA-D3-A1Q6-06 12 130015697 130015697 G A TMEM132D Missense_Mutation p.S341F 0.20 tolerated(0.16) benign(0.12) TCGA-D3-A1Q6-06 12 130840172 130840172 G A PIWIL1 Missense_Mutation p.R455K 0.17 deleterious(0.01) possibly_damaging(0.505) TCGA-D3-A1Q6-06 12 132514418 132514418 C T EP400 Missense_Mutation p.P1852S 0.11 unknown(0) TCGA-D3-A1Q6-06 12 14836052 14836052 C T GUCY2C Missense_Mutation p.D179N 0.32 tolerated(0.89) benign(0.001) TCGA-D3-A1Q6-06 12 15654688 15654688 C T PTPRO Missense_Mutation p.H266Y 0.16 deleterious_low_confidence(0.02) benign(0.15) TCGA-D3-A1Q6-06 12 18552663 18552663 C T PIK3C2G Missense_Mutation p.P692S 0.52 deleterious(0) benign(0.279) TCGA-D3-A1Q6-06 12 22001161 22001161 G C ABCC9 Missense_Mutation p.T930S 0.39 deleterious(0.03) benign(0.042) TCGA-D3-A1Q6-06 12 28459758 28459758 C T CCDC91 Silent p.A117A 0.27 TCGA-D3-A1Q6-06 12 31842014 31842014 C T AMN1 Silent p.G210G 0.23 TCGA-D3-A1Q6-06 12 39709037 39709037 G A KIF21A Missense_Mutation p.S1318F 0.14 tolerated(0.11) benign(0.001) TCGA-D3-A1Q6-06 12 40001459 40001459 C T ABCD2 Missense_Mutation p.R393Q 0.17 deleterious(0) possibly_damaging(0.82) TCGA-D3-A1Q6-06 12 41967242 41967242 G A PDZRN4 Missense_Mutation p.M887I 0.50 deleterious(0) possibly_damaging(0.883) TCGA-D3-A1Q6-06 12 43777628 43777628 C T ADAMTS20 Silent p.G1535G 0.48 TCGA-D3-A1Q6-06 12 45169851 45169851 C T NELL2 Missense_Mutation p.R332Q 0.14 tolerated(0.11) benign(0.028) TCGA-D3-A1Q6-06 12 46591542 46591542 G A SLC38A1 Silent p.I441I 0.19 TCGA-D3-A1Q6-06 12 4736421 4736421 G A AKAP3 Silent p.S549S 0.57 TCGA-D3-A1Q6-06 12 48191897 48191897 G A HDAC7 Missense_Mutation p.P152L 0.42 tolerated(0.7) possibly_damaging(0.691) TCGA-D3-A1Q6-06 12 48375736 48375736 C T COL2A1 Intron 0.35 TCGA-D3-A1Q6-06 12 48738490 48738490 G A ZNF641 Missense_Mutation p.P152S 0.59 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q6-06 12 49167748 49167748 G A ADCY6 Missense_Mutation p.T806I 0.36 tolerated(0.19) benign(0.014) TCGA-D3-A1Q6-06 12 49435116 49435116 G A KMT2D Missense_Mutation p.P2146L 0.64 possibly_damaging(0.895) TCGA-D3-A1Q6-06 12 49444788 49444788 G A KMT2D Missense_Mutation p.P893L 0.41 unknown(0) TCGA-D3-A1Q6-06 12 52882228 52882228 C T KRT6A Silent p.K436K 0.17 TCGA-D3-A1Q6-06 12 53715282 53715282 A T AAAS 5'UTR 0.44 TCGA-D3-A1Q6-06 12 54367499 54367499 C T HOXC11 Silent p.A158A 0.22 TCGA-D3-A1Q6-06 12 54930765 54930765 C T NCKAP1L Silent p.I1037I 0.28 TCGA-D3-A1Q6-06 12 56230806 56230806 C T MMP19 3'UTR 0.16 TCGA-D3-A1Q6-06 12 56755826 56755826 G A APOF Missense_Mutation p.S55F 0.44 deleterious(0.01) probably_damaging(0.946) TCGA-D3-A1Q6-06 12 57976385 57976385 G A KIF5A Missense_Mutation p.G998E 0.43 deleterious_low_confidence(0) benign(0.108) TCGA-D3-A1Q6-06 12 60168918 60168918 C T SLC16A7 Missense_Mutation p.S281L 0.44 deleterious(0.03) probably_damaging(0.928) TCGA-D3-A1Q6-06 12 63195741 63195741 C T PPM1H Missense_Mutation p.R204Q 0.20 tolerated(0.28) possibly_damaging(0.744) TCGA-D3-A1Q6-06 12 6705212 6705212 G A CHD4 Nonsense_Mutation p.Q662* 0.13 TCGA-D3-A1Q6-06 12 67699646 67699646 C T CAND1 Missense_Mutation p.S733F 0.40 deleterious(0.04) benign(0.149) TCGA-D3-A1Q6-06 12 7014749 7014749 G A LRRC23 Intron 0.15 TCGA-D3-A1Q6-06 12 7169848 7169848 C T C1S Silent p.S25S 0.55 TCGA-D3-A1Q6-06 12 7177568 7177568 G A C1S Missense_Mutation p.M560I 0.15 tolerated(0.16) benign(0.001) TCGA-D3-A1Q6-06 12 72893359 72893359 G A TRHDE Missense_Mutation p.E511K 0.55 deleterious(0.02) benign(0.265) TCGA-D3-A1Q6-06 12 75444474 75444474 G A KCNC2 Silent p.T437T 0.36 TCGA-D3-A1Q6-06 12 81102630 81102630 G A MYF6 Missense_Mutation p.S207N 0.40 tolerated(0.62) benign(0.012) TCGA-D3-A1Q6-06 12 81102631 81102631 T A MYF6 Missense_Mutation p.S207R 0.41 tolerated(0.53) benign(0.009) TCGA-D3-A1Q6-06 12 8330086 8330086 C T ZNF705A Silent p.G270G 0.40 TCGA-D3-A1Q6-06 12 8629945 8629945 C T CLEC6A Missense_Mutation p.S172F 0.10 tolerated(0.07) probably_damaging(0.946) TCGA-D3-A1Q6-06 12 95603831 95603831 G A FGD6 Missense_Mutation p.S410F 0.20 deleterious_low_confidence(0) benign(0.013) TCGA-D3-A1Q6-06 12 95926668 95926668 C T USP44 Silent p.R455R 0.13 TCGA-D3-A1Q6-06 12 96181188 96181188 C T NTN4 Missense_Mutation p.M38I 0.19 tolerated(0.34) benign(0.129) TCGA-D3-A1Q6-06 13 20039428 20039428 C T TPTE2 Missense_Mutation p.D215N 0.18 deleterious(0.03) benign(0.102) TCGA-D3-A1Q6-06 13 20039430 20039430 C T TPTE2 Missense_Mutation p.R214K 0.19 tolerated(1) benign(0.007) TCGA-D3-A1Q6-06 13 21436885 21436885 G A XPO4 Silent p.F96F 0.31 TCGA-D3-A1Q6-06 13 23808844 23808844 C T SGCG Missense_Mutation p.S97F 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 13 37016767 37016767 C T CCNA1 Missense_Mutation p.L455F 0.24 deleterious(0.02) benign(0.213) TCGA-D3-A1Q6-06 13 37269532 37269532 C T SERTM1 Missense_Mutation p.S106L 0.22 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-D3-A1Q6-06 13 39438468 39438468 C G FREM2 Missense_Mutation p.P2570A 0.28 tolerated(0.07) benign(0.115) TCGA-D3-A1Q6-06 13 39454951 39454951 C T FREM2 3'UTR 0.33 TCGA-D3-A1Q6-06 13 70549852 70549852 G A KLHL1 Missense_Mutation p.H194Y 0.37 deleterious(0.02) possibly_damaging(0.566) TCGA-D3-A1Q6-06 13 72063265 72063265 G A DACH1 Missense_Mutation p.S531F 0.36 possibly_damaging(0.637) TCGA-D3-A1Q6-06 13 79176586 79176586 G A POU4F1 Missense_Mutation p.P75L 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A1Q6-06 13 92797119 92797119 G A GPC5 Missense_Mutation p.E480K 0.21 tolerated(0.25) benign(0.243) TCGA-D3-A1Q6-06 13 99337031 99337031 C T SLC15A1 Missense_Mutation p.E692K 0.25 tolerated(0.29) benign(0.009) TCGA-D3-A1Q6-06 13 99567641 99567641 G A DOCK9 Silent p.I278I 0.32 TCGA-D3-A1Q6-06 14 104201504 104201504 C T PPP1R13B Missense_Mutation p.R1087Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q6-06 14 105411544 105411544 C T AHNAK2 Missense_Mutation p.G3415D 0.17 probably_damaging(0.973) TCGA-D3-A1Q6-06 14 105411545 105411545 C T AHNAK2 Missense_Mutation p.G3415S 0.17 possibly_damaging(0.615) TCGA-D3-A1Q6-06 14 106208508 106208508 T C IGHG1 Missense_Mutation p.K131R 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-D3-A1Q6-06 14 106791087 106791087 G A IGHV3-30 Missense_Mutation p.S90F 0.18 deleterious_low_confidence(0.01) benign(0.397) TCGA-D3-A1Q6-06 14 19988215 19988215 G A POTEM 3'UTR 0.06 TCGA-D3-A1Q6-06 14 20248805 20248805 G A OR4M1 Silent p.G108G 0.19 TCGA-D3-A1Q6-06 14 22564757 22564757 C T TRDV1 Missense_Mutation p.R70C 0.48 deleterious(0.04) benign(0.286) TCGA-D3-A1Q6-06 14 23390074 23390074 G A PRMT5 3'UTR 0.14 TCGA-D3-A1Q6-06 14 23863420 23863420 C T MYH6 Missense_Mutation p.E848K 0.33 deleterious(0.03) possibly_damaging(0.808) TCGA-D3-A1Q6-06 14 24034858 24034858 G A AP1G2 Missense_Mutation p.S233F 0.40 deleterious(0) probably_damaging(0.994) TCGA-D3-A1Q6-06 14 24573072 24573072 C T PCK2 Missense_Mutation p.R608C 0.14 deleterious(0.03) possibly_damaging(0.765) TCGA-D3-A1Q6-06 14 24601790 24601790 C T FITM1 Missense_Mutation p.P213S 0.45 tolerated(0.44) benign(0.113) TCGA-D3-A1Q6-06 14 26949327 26949327 C T NOVA1 Silent p.L101L 0.28 TCGA-D3-A1Q6-06 14 31828259 31828259 G A HEATR5A Silent p.N399N 0.19 TCGA-D3-A1Q6-06 14 34419787 34419787 C T EGLN3 Missense_Mutation p.D58N 0.42 deleterious(0.02) benign(0.09) TCGA-D3-A1Q6-06 14 39716233 39716233 C T MIA2 Missense_Mutation p.S152F 0.32 tolerated(0.57) benign(0.013) TCGA-D3-A1Q6-06 14 50655284 50655284 C T SOS2 Silent p.R215R 0.35 TCGA-D3-A1Q6-06 14 55434105 55434105 G C WDHD1 Missense_Mutation p.P691A 0.10 deleterious(0.03) benign(0.13) TCGA-D3-A1Q6-06 14 61920070 61920070 C T PRKCH Missense_Mutation p.S320L 0.17 tolerated(0.09) benign(0.004) TCGA-D3-A1Q6-06 14 61924337 61924337 C T PRKCH Silent p.I406I 0.42 TCGA-D3-A1Q6-06 14 62200959 62200959 G A HIF1A Silent p.K352K 0.26 TCGA-D3-A1Q6-06 14 65253286 65253286 C T SPTB Missense_Mutation p.D1133N 0.12 deleterious(0) possibly_damaging(0.823) TCGA-D3-A1Q6-06 14 70633434 70633434 A G SLC8A3 Missense_Mutation p.V569A 0.45 tolerated(0.29) benign(0.347) TCGA-D3-A1Q6-06 14 70634243 70634243 C T SLC8A3 Silent p.G299G 0.38 TCGA-D3-A1Q6-06 14 70714032 70714032 C T ADAM21P1 RNA 0.17 TCGA-D3-A1Q6-06 14 70924562 70924562 G A ADAM21 Missense_Mutation p.E116K 0.24 deleterious(0) probably_damaging(0.927) TCGA-D3-A1Q6-06 14 75276309 75276309 G A YLPM1 Nonsense_Mutation p.W1583* 0.30 TCGA-D3-A1Q6-06 14 76012904 76012904 G A BATF Missense_Mutation p.E90K 0.30 deleterious(0) possibly_damaging(0.539) TCGA-D3-A1Q6-06 14 77255678 77255678 G A ANGEL1 Missense_Mutation p.L636F 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 14 77580457 77580457 C T CIPC Silent p.I332I 0.42 TCGA-D3-A1Q6-06 14 77812698 77812698 G A TMED8 Silent p.L107L 0.36 TCGA-D3-A1Q6-06 14 80328034 80328034 G A NRXN3 Silent p.R971R 0.36 TCGA-D3-A1Q6-06 14 80668703 80668703 C T DIO2 3'Flank 0.26 TCGA-D3-A1Q6-06 14 81744156 81744156 C T STON2 Missense_Mutation p.R500Q 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A1Q6-06 14 86087949 86087949 T G FLRT2 Missense_Mutation p.S31A 0.36 tolerated(0.35) benign(0.041) TCGA-D3-A1Q6-06 14 89154729 89154729 C T EML5 Silent p.E876E 0.36 TCGA-D3-A1Q6-06 14 90730407 90730407 T G PSMC1 Missense_Mutation p.L163R 0.45 deleterious(0) possibly_damaging(0.86) TCGA-D3-A1Q6-06 14 92047361 92047361 C T CATSPERB Missense_Mutation p.A1075T 0.21 tolerated(0.31) benign(0.013) TCGA-D3-A1Q6-06 14 93990337 93990337 C T UNC79 Silent p.I127I 0.28 TCGA-D3-A1Q6-06 14 94008890 94008890 C T UNC79 Missense_Mutation p.H358Y 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A1Q6-06 15 102516443 102516443 G A WASH3P 3'Flank 0.09 TCGA-D3-A1Q6-06 15 22853742 22853742 C T TUBGCP5 Silent p.L460L 0.32 TCGA-D3-A1Q6-06 15 25438365 25438365 G A SNORD115-11 3'Flank 0.30 TCGA-D3-A1Q6-06 15 40476063 40476063 C T BUB1B Missense_Mutation p.R244C 0.33 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q6-06 15 40943753 40943753 G A CASC5 Silent p.E2125E 0.21 TCGA-D3-A1Q6-06 15 40943754 40943754 C G CASC5 Missense_Mutation p.L2126V 0.21 deleterious(0.01) possibly_damaging(0.827) TCGA-D3-A1Q6-06 15 41476729 41476729 C T EXD1 Silent p.R315R 0.34 TCGA-D3-A1Q6-06 15 41814314 41814314 G A RPAP1 Silent p.L959L 0.31 TCGA-D3-A1Q6-06 15 41819387 41819387 T C RPAP1 Missense_Mutation p.H575R 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q6-06 15 43299340 43299340 C T UBR1 Missense_Mutation p.A1118T 0.23 deleterious(0) probably_damaging(0.958) TCGA-D3-A1Q6-06 15 49574181 49574181 C T GALK2 Intron 0.23 TCGA-D3-A1Q6-06 15 50540510 50540510 G A HDC Missense_Mutation p.R358C 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 15 57929917 57929917 C T GCOM1 Missense_Mutation p.L320F 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A1Q6-06 15 58855766 58855766 G A LIPC Missense_Mutation p.G411D 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 15 65943235 65943235 C T SLC24A1 Silent p.P916P 0.16 TCGA-D3-A1Q6-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.28 tolerated(0.08) probably_damaging(0.913) TCGA-D3-A1Q6-06 15 69320683 69320683 C T NOX5 Silent p.L101L 0.19 TCGA-D3-A1Q6-06 15 72690727 72690727 G A TMEM202 Silent p.K20K 0.43 TCGA-D3-A1Q6-06 15 72953658 72953658 G A GOLGA6B Silent p.K206K 0.08 TCGA-D3-A1Q6-06 15 74659854 74659854 C T CYP11A1 Missense_Mutation p.E25K 0.19 tolerated(0.12) benign(0.031) TCGA-D3-A1Q6-06 15 81172150 81172150 C T KIAA1199 Missense_Mutation p.A112V 0.32 tolerated(0.08) benign(0.007) TCGA-D3-A1Q6-06 15 81172151 81172151 C T KIAA1199 Silent p.A112A 0.32 TCGA-D3-A1Q6-06 15 81624945 81624945 C T TMC3 Missense_Mutation p.E1040K 0.24 deleterious_low_confidence(0.04) benign(0.191) TCGA-D3-A1Q6-06 15 82444125 82444125 G A EFTUD1 Silent p.V890V 0.20 TCGA-D3-A1Q6-06 15 89074362 89074362 G A DET1 Missense_Mutation p.S203F 0.23 deleterious(0) probably_damaging(0.936) TCGA-D3-A1Q6-06 16 112805 112805 G A RHBDF1 Missense_Mutation p.P255S 0.22 tolerated(0.21) possibly_damaging(0.685) TCGA-D3-A1Q6-06 16 112806 112806 G A RHBDF1 Silent p.F254F 0.22 TCGA-D3-A1Q6-06 16 14014012 14014012 G A ERCC4 5'Flank 0.27 TCGA-D3-A1Q6-06 16 15457915 15457915 C T NPIPA5 Silent p.A218A 0.27 TCGA-D3-A1Q6-06 16 16271312 16271312 C T ABCC6 Missense_Mutation p.G863R 0.29 tolerated(0.25) benign(0.021) TCGA-D3-A1Q6-06 16 19474639 19474639 C T TMC5 Missense_Mutation p.R396C 0.28 tolerated(0.08) benign(0.006) TCGA-D3-A1Q6-06 16 20976239 20976239 C T DNAH3 Silent p.G2989G 0.40 TCGA-D3-A1Q6-06 16 2131643 2131643 T A TSC2 Missense_Mutation p.S1220T 0.35 tolerated(0.08) probably_damaging(0.995) TCGA-D3-A1Q6-06 16 216761 216761 C T HBM 3'UTR 0.42 TCGA-D3-A1Q6-06 16 22157565 22157565 G A VWA3A Silent p.V913V 0.18 TCGA-D3-A1Q6-06 16 22278015 22278015 C T EEF2K Silent p.L528L 0.37 TCGA-D3-A1Q6-06 16 23364159 23364159 G T SCNN1B Nonsense_Mutation p.E117* 0.25 TCGA-D3-A1Q6-06 16 2485844 2485844 C T CCNF Silent p.L106L 0.18 TCGA-D3-A1Q6-06 16 2569310 2569310 C T RP11-20I23.1 Missense_Mutation p.P353S 0.27 unknown(0) TCGA-D3-A1Q6-06 16 28506011 28506011 C T APOBR Silent p.F3F 0.31 TCGA-D3-A1Q6-06 16 28994599 28994599 C T SPNS1 Silent p.Y436Y 0.39 TCGA-D3-A1Q6-06 16 30012333 30012333 C T INO80E Missense_Mutation p.S123F 0.23 deleterious(0) probably_damaging(0.992) TCGA-D3-A1Q6-06 16 30958426 30958426 C T FBXL19 Silent p.L654L 0.50 TCGA-D3-A1Q6-06 16 3273880 3273880 G A ZNF200 3'UTR 0.35 TCGA-D3-A1Q6-06 16 33020746 33020746 T C IGHV3OR16-8 Missense_Mutation p.Y52H 0.30 tolerated_low_confidence(0.3) benign(0.062) TCGA-D3-A1Q6-06 16 33647677 33647677 C T RP11-812E19.9 Nonsense_Mutation p.W7* 0.26 TCGA-D3-A1Q6-06 16 4493015 4493015 C T DNAJA3 Intron 0.28 TCGA-D3-A1Q6-06 16 5040863 5040863 C T SEC14L5 Silent p.I147I 0.35 TCGA-D3-A1Q6-06 16 50765683 50765683 G A NOD2 Missense_Mutation p.E1026K 0.21 deleterious(0) possibly_damaging(0.579) TCGA-D3-A1Q6-06 16 52497959 52497959 C T TOX3 Missense_Mutation p.G99R 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A1Q6-06 16 56652683 56652683 C T MT1L RNA 0.36 TCGA-D3-A1Q6-06 16 57005272 57005272 G A CETP Missense_Mutation p.D213N 0.32 tolerated(0.33) benign(0.028) TCGA-D3-A1Q6-06 16 57719839 57719839 G A GPR97 Splice_Site p.X514_splice 0.29 TCGA-D3-A1Q6-06 16 57738858 57738858 G A CCDC135 Missense_Mutation p.R257K 0.33 tolerated(1) benign(0.005) TCGA-D3-A1Q6-06 16 61761118 61761118 C T CDH8 Silent p.R472R 0.21 TCGA-D3-A1Q6-06 16 61935284 61935284 C T CDH8 Missense_Mutation p.G116R 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 16 624315 624315 C T PIGQ Silent p.L81L 0.27 TCGA-D3-A1Q6-06 16 67183498 67183498 G A B3GNT9 Silent p.A297A 0.46 TCGA-D3-A1Q6-06 16 67319276 67319276 C T PLEKHG4 Missense_Mutation p.P760L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 16 67325353 67325353 C T KCTD19 Silent p.L808L 0.38 TCGA-D3-A1Q6-06 16 677501 677501 C T RAB40C Missense_Mutation p.S242F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-D3-A1Q6-06 16 67969901 67969901 G A PSMB10 Silent p.A116A 0.30 TCGA-D3-A1Q6-06 16 70954854 70954854 G A HYDIN Silent p.D2475D 0.25 TCGA-D3-A1Q6-06 16 71784130 71784130 G A AP1G1 Missense_Mutation p.L467F 0.30 tolerated(0.32) benign(0.126) TCGA-D3-A1Q6-06 16 72162589 72162589 G A PMFBP1 Silent p.T685T 0.25 TCGA-D3-A1Q6-06 16 72822544 72822544 G T ZFHX3 Missense_Mutation p.P3211T 0.30 unknown(0) TCGA-D3-A1Q6-06 16 74452149 74452149 G A CLEC18B Silent p.L88L 0.14 TCGA-D3-A1Q6-06 16 77355084 77355084 G A ADAMTS18 Missense_Mutation p.H727Y 0.30 tolerated(0.2) benign(0.001) TCGA-D3-A1Q6-06 16 81094907 81094907 G A C16orf46 Silent p.I349I 0.25 TCGA-D3-A1Q6-06 16 81946258 81946258 C T PLCG2 Missense_Mutation p.P664L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 16 89965042 89965042 G A TCF25 Missense_Mutation p.C367Y 0.32 deleterious(0) probably_damaging(0.976) TCGA-D3-A1Q6-06 17 10304266 10304266 C T MYH8 Missense_Mutation p.E1089K 0.14 deleterious(0) possibly_damaging(0.582) TCGA-D3-A1Q6-06 17 10400485 10400485 C T MYH1 Silent p.Q1519Q 0.30 TCGA-D3-A1Q6-06 17 10400755 10400755 C T MYH1 Nonsense_Mutation p.W1460* 0.49 TCGA-D3-A1Q6-06 17 10417207 10417207 G A MYH1 Silent p.I224I 0.35 TCGA-D3-A1Q6-06 17 10428906 10428906 C T MYH2 Missense_Mutation p.E1467K 0.19 deleterious(0) probably_damaging(0.955) TCGA-D3-A1Q6-06 17 10543718 10543718 G A MYH3 Silent p.I786I 0.17 TCGA-D3-A1Q6-06 17 11515185 11515185 A G DNAH9 Intron 0.25 TCGA-D3-A1Q6-06 17 11645623 11645623 C T DNAH9 Missense_Mutation p.S2035F 0.23 probably_damaging(1) TCGA-D3-A1Q6-06 17 12639544 12639544 G A MYOCD Missense_Mutation p.G161E 0.18 tolerated(0.08) possibly_damaging(0.767) TCGA-D3-A1Q6-06 17 13400102 13400102 G A HS3ST3A1 Silent p.I211I 0.16 TCGA-D3-A1Q6-06 17 18541689 18541689 G A TBC1D28 Silent p.G108G 0.17 TCGA-D3-A1Q6-06 17 27248758 27248758 C T PHF12 Missense_Mutation p.D262N 0.33 deleterious(0.01) possibly_damaging(0.594) TCGA-D3-A1Q6-06 17 27306729 27306729 G A SEZ6 Missense_Mutation p.S276F 0.46 deleterious(0) possibly_damaging(0.602) TCGA-D3-A1Q6-06 17 33513330 33513330 T C UNC45B Silent p.L850L 0.12 TCGA-D3-A1Q6-06 17 33849543 33849543 G A SLFN12L 5'UTR 0.23 TCGA-D3-A1Q6-06 17 34340243 34340243 C T CCL23 Silent p.K136K 0.11 TCGA-D3-A1Q6-06 17 36865786 36865786 C T MLLT6 Silent p.N170N 0.26 TCGA-D3-A1Q6-06 17 37119098 37119098 C T FBXO47 Missense_Mutation p.V61M 0.40 deleterious(0) probably_damaging(0.941) TCGA-D3-A1Q6-06 17 37899717 37899717 C T GRB7 Silent p.L242L 0.25 TCGA-D3-A1Q6-06 17 38978582 38978582 G A KRT10 Missense_Mutation p.R86C 0.20 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A1Q6-06 17 39021199 39021199 C T KRT12 Silent p.L222L 0.40 TCGA-D3-A1Q6-06 17 39333894 39333894 C A KRTAP4-2 3'UTR 0.34 TCGA-D3-A1Q6-06 17 39872037 39872037 C T GAST Silent p.S73S 0.11 TCGA-D3-A1Q6-06 17 39912026 39912026 C T JUP Silent p.P736P 0.13 TCGA-D3-A1Q6-06 17 40004594 40004594 T A KLHL10 3'UTR 0.27 TCGA-D3-A1Q6-06 17 40004595 40004595 A G KLHL10 3'UTR 0.26 TCGA-D3-A1Q6-06 17 40271297 40271297 C T KAT2A Missense_Mutation p.E347K 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A1Q6-06 17 41001353 41001353 G A AOC2 Silent p.L613L 0.12 TCGA-D3-A1Q6-06 17 42460858 42460858 C T ITGA2B Intron 0.21 TCGA-D3-A1Q6-06 17 42466799 42466799 C T ITGA2B Missense_Mutation p.E15K 0.21 tolerated(0.5) benign(0.175) TCGA-D3-A1Q6-06 17 42957932 42957932 C T EFTUD2 Missense_Mutation p.M203I 0.29 tolerated(1) benign(0.001) TCGA-D3-A1Q6-06 17 43226788 43226788 G A HEXIM1 Silent p.Q77Q 0.48 TCGA-D3-A1Q6-06 17 43906643 43906643 C T CRHR1 Silent p.S130S 0.26 TCGA-D3-A1Q6-06 17 4646701 4646701 C T ZMYND15 Silent p.F416F 0.21 TCGA-D3-A1Q6-06 17 46607775 46607775 C T HOXB1 Silent p.K164K 0.34 TCGA-D3-A1Q6-06 17 4805130 4805130 G A C17orf107 3'UTR 0.56 TCGA-D3-A1Q6-06 17 48271376 48271376 G A COL1A1 Silent p.P565P 0.28 TCGA-D3-A1Q6-06 17 48274591 48274591 C T COL1A1 Missense_Mutation p.E234K 0.42 unknown(0) TCGA-D3-A1Q6-06 17 48601050 48601050 C T MYCBPAP Missense_Mutation p.H557Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 17 48628483 48628483 A G SPATA20 Missense_Mutation p.K503R 0.32 tolerated(0.81) benign(0.012) TCGA-D3-A1Q6-06 17 48704214 48704214 G A CACNA1G 3'UTR 0.20 TCGA-D3-A1Q6-06 17 48733268 48733268 C T ABCC3 Missense_Mutation p.P41S 0.52 deleterious(0) probably_damaging(0.971) TCGA-D3-A1Q6-06 17 48917681 48917681 G A WFIKKN2 Nonsense_Mutation p.W344* 0.22 TCGA-D3-A1Q6-06 17 54450127 54450127 A C ANKFN1 Missense_Mutation p.K244T 0.24 tolerated(0.13) benign(0.212) TCGA-D3-A1Q6-06 17 56233033 56233033 C T OR4D1 Silent p.I173I 0.44 TCGA-D3-A1Q6-06 17 56350778 56350778 C T MPO Missense_Mutation p.E540K 0.36 deleterious(0) possibly_damaging(0.554) TCGA-D3-A1Q6-06 17 56679191 56679191 C T TEX14 Missense_Mutation p.E558K 0.40 deleterious(0.01) benign(0.206) TCGA-D3-A1Q6-06 17 57057591 57057591 G A PPM1E Silent p.R489R 0.42 TCGA-D3-A1Q6-06 17 57287525 57287525 C T SMG8 Missense_Mutation p.P38L 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.564) TCGA-D3-A1Q6-06 17 61723433 61723433 C G MAP3K3 Missense_Mutation p.R87G 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 17 61987127 61987127 C T CSHL1 Missense_Mutation p.E205K 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A1Q6-06 17 62045702 62045702 G A SCN4A Silent p.I239I 0.34 TCGA-D3-A1Q6-06 17 62290114 62290114 G A TEX2 Silent p.I488I 0.36 TCGA-D3-A1Q6-06 17 62801022 62801022 G A PLEKHM1P RNA 0.25 TCGA-D3-A1Q6-06 17 6902045 6902045 G A ALOX12 Nonsense_Mutation p.W144* 0.21 TCGA-D3-A1Q6-06 17 72937621 72937621 G A OTOP3 Silent p.L69L 0.27 TCGA-D3-A1Q6-06 17 73490710 73490710 G A KIAA0195 Missense_Mutation p.G804R 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q6-06 17 7402454 7402454 C T POLR2A Missense_Mutation p.P478S 0.31 probably_damaging(0.989) TCGA-D3-A1Q6-06 17 74475073 74475073 G T RHBDF2 Silent p.R192R 0.10 TCGA-D3-A1Q6-06 17 7535033 7535033 C T SHBG Missense_Mutation p.P228S 0.15 deleterious(0.03) probably_damaging(1) TCGA-D3-A1Q6-06 17 7684450 7684450 C T DNAH2 Missense_Mutation p.P2032S 0.18 probably_damaging(0.994) TCGA-D3-A1Q6-06 17 78032373 78032373 G A CCDC40 Missense_Mutation p.D414N 0.17 tolerated(0.26) possibly_damaging(0.578) TCGA-D3-A1Q6-06 17 7806313 7806313 C T CHD3 Silent p.I1202I 0.22 TCGA-D3-A1Q6-06 17 8395693 8395693 C T MYH10 Silent p.E1531E 0.19 TCGA-D3-A1Q6-06 17 9515667 9515667 G A WDR16 Missense_Mutation p.R299Q 0.14 tolerated(0.07) benign(0.014) TCGA-D3-A1Q6-06 17 9783799 9783799 G A GLP2R Missense_Mutation p.R417Q 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A1Q6-06 18 10691382 10691382 C T PIEZO2 Splice_Site p.X2284_splice 0.25 TCGA-D3-A1Q6-06 18 12982560 12982560 C T SEH1L Missense_Mutation p.H269Y 0.20 tolerated(0.11) benign(0.003) TCGA-D3-A1Q6-06 18 20936596 20936596 G A TMEM241 Silent p.F211F 0.15 TCGA-D3-A1Q6-06 18 23861953 23861953 G A TAF4B Missense_Mutation p.E301K 0.29 deleterious(0) probably_damaging(0.965) TCGA-D3-A1Q6-06 18 28934957 28934957 T A DSG1 Missense_Mutation p.M933K 0.20 deleterious(0) benign(0.055) TCGA-D3-A1Q6-06 18 29793396 29793396 G A MEP1B Missense_Mutation p.D485N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 18 3112368 3112368 G A MYOM1 Nonsense_Mutation p.R1116* 0.37 TCGA-D3-A1Q6-06 18 31326648 31326648 A C ASXL3 3'UTR 0.20 TCGA-D3-A1Q6-06 18 32823284 32823284 C T ZNF397 Intron 0.20 TCGA-D3-A1Q6-06 18 33744542 33744542 C T ELP2 Silent p.F687F 0.33 TCGA-D3-A1Q6-06 18 40503627 40503627 C T RIT2 Silent p.K112K 0.10 TCGA-D3-A1Q6-06 18 43319553 43319553 C T SLC14A1 Missense_Mutation p.S347F 0.26 deleterious(0.03) possibly_damaging(0.906) TCGA-D3-A1Q6-06 18 50985607 50985607 G A DCC Missense_Mutation p.R1133Q 0.25 deleterious(0.01) benign(0.439) TCGA-D3-A1Q6-06 18 5434071 5434071 G A EPB41L3 Missense_Mutation p.P219S 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 18 56586400 56586400 C T ZNF532 Missense_Mutation p.S294L 0.23 deleterious(0.01) benign(0.069) TCGA-D3-A1Q6-06 18 57105378 57105378 C T CCBE1 Missense_Mutation p.G318R 0.38 deleterious(0) probably_damaging(0.984) TCGA-D3-A1Q6-06 18 59483351 59483351 C T RNF152 Missense_Mutation p.D116N 0.23 tolerated(0.13) benign(0.083) TCGA-D3-A1Q6-06 18 61328448 61328448 C T SERPINB3 Translation_Start_Site p.M1? 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 18 66541933 66541933 G A CCDC102B Missense_Mutation p.D322N 0.13 tolerated(1) benign(0.001) TCGA-D3-A1Q6-06 18 77170939 77170939 C T NFATC1 Missense_Mutation p.P209S 0.31 deleterious(0.01) benign(0.04) TCGA-D3-A1Q6-06 18 77748263 77748263 C T TXNL4A Missense_Mutation p.V44I 0.33 tolerated(0.99) benign(0.002) TCGA-D3-A1Q6-06 18 8718506 8718506 C T SOGA2 Missense_Mutation p.R20W 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 19 10204063 10204063 G A ANGPTL6 Missense_Mutation p.P395L 0.25 tolerated(0.15) probably_damaging(0.986) TCGA-D3-A1Q6-06 19 11130342 11130342 G A SMARCA4 Missense_Mutation p.E861K 0.38 probably_damaging(0.999) TCGA-D3-A1Q6-06 19 11152154 11152154 G A SMARCA4 Missense_Mutation p.A1448T 0.12 benign(0.024) TCGA-D3-A1Q6-06 19 12595548 12595548 C T ZNF709 5'UTR 0.43 TCGA-D3-A1Q6-06 19 12812989 12812989 G A TNPO2 Missense_Mutation p.R770C 0.50 tolerated_low_confidence(0.11) benign(0.039) TCGA-D3-A1Q6-06 19 12991836 12991836 C G DNASE2 Missense_Mutation p.G73R 0.20 deleterious(0) possibly_damaging(0.658) TCGA-D3-A1Q6-06 19 1460850 1460850 C T APC2 Silent p.L505L 0.31 TCGA-D3-A1Q6-06 19 14805826 14805826 C T ZNF333 Missense_Mutation p.S3F 0.32 deleterious(0.01) benign(0.029) TCGA-D3-A1Q6-06 19 15839270 15839270 G A OR10H2 Silent p.R139R 0.41 TCGA-D3-A1Q6-06 19 16268126 16268126 C T HSH2D 3'Flank 0.29 TCGA-D3-A1Q6-06 19 1789022 1789022 G A ATP8B3 Silent p.L981L 0.22 TCGA-D3-A1Q6-06 19 1825933 1825933 C T REXO1 Missense_Mutation p.E641K 0.39 deleterious(0.03) benign(0.053) TCGA-D3-A1Q6-06 19 21934444 21934444 G A ZNF100 Intron 0.27 TCGA-D3-A1Q6-06 19 21934445 21934445 G A ZNF100 Intron 0.26 TCGA-D3-A1Q6-06 19 22255614 22255614 C T ZNF257 Missense_Mutation p.P3S 0.24 tolerated(0.78) benign(0.017) TCGA-D3-A1Q6-06 19 2408432 2408432 C T TMPRSS9 Silent p.A273A 0.32 TCGA-D3-A1Q6-06 19 2939291 2939291 G A ZNF77 Missense_Mutation p.L40F 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 19 35773443 35773443 T C HAMP 5'UTR 0.33 TCGA-D3-A1Q6-06 19 35773444 35773444 C T HAMP 5'UTR 0.32 TCGA-D3-A1Q6-06 19 36255778 36255778 C T C19orf55 Silent p.S189S 0.29 TCGA-D3-A1Q6-06 19 37038984 37038984 G A ZNF529 Missense_Mutation p.T159I 0.30 tolerated(0.32) benign(0.002) TCGA-D3-A1Q6-06 19 3731984 3731984 C T TJP3 Missense_Mutation p.S231L 0.42 deleterious(0) possibly_damaging(0.586) TCGA-D3-A1Q6-06 19 3765185 3765185 G A MRPL54 Missense_Mutation p.G47E 0.30 tolerated(0.15) benign(0.295) TCGA-D3-A1Q6-06 19 38774303 38774303 G A SPINT2 Missense_Mutation p.R48Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 19 38817565 38817565 G A KCNK6 Missense_Mutation p.D219N 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 19 39330858 39330858 G A HNRNPL Missense_Mutation p.P371S 0.48 tolerated(0.27) benign(0.064) TCGA-D3-A1Q6-06 19 40354371 40354371 C T FCGBP Silent p.G5366G 0.36 TCGA-D3-A1Q6-06 19 40580277 40580277 G A ZNF780A 3'UTR 0.21 TCGA-D3-A1Q6-06 19 41522735 41522735 G A CYP2B6 3'UTR 0.38 TCGA-D3-A1Q6-06 19 41622461 41622461 G T CYP2F1 Missense_Mutation p.Q91H 0.38 tolerated(0.32) benign(0.054) TCGA-D3-A1Q6-06 19 42218946 42218946 G A CEACAM5 Missense_Mutation p.D161N 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A1Q6-06 19 42930801 42930801 C T LIPE Silent p.R167R 0.31 TCGA-D3-A1Q6-06 19 4354996 4354996 C T MPND Silent p.G299G 0.29 TCGA-D3-A1Q6-06 19 43763240 43763240 C T PSG9 Missense_Mutation p.E253K 0.26 tolerated(0.36) possibly_damaging(0.845) TCGA-D3-A1Q6-06 19 44010906 44010906 G A ETHE1 3'UTR 0.40 TCGA-D3-A1Q6-06 19 44096106 44096106 C T IRGQ 3'UTR 0.37 TCGA-D3-A1Q6-06 19 45528871 45528871 C T RELB Silent p.S254S 0.32 TCGA-D3-A1Q6-06 19 46201878 46201878 C T QPCTL Missense_Mutation p.S236F 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q6-06 19 46375805 46375805 C T FOXA3 Missense_Mutation p.S181F 0.29 deleterious(0) probably_damaging(0.948) TCGA-D3-A1Q6-06 19 47535945 47535945 C T NPAS1 Silent p.F159F 0.23 TCGA-D3-A1Q6-06 19 4839243 4839243 G A PLIN3 Silent p.A422A 0.26 TCGA-D3-A1Q6-06 19 4852162 4852162 G A PLIN3 Missense_Mutation p.S167F 0.41 deleterious(0) probably_damaging(0.992) TCGA-D3-A1Q6-06 19 50128183 50128183 C T PRR12 Missense_Mutation p.P1935L 0.22 unknown(0) TCGA-D3-A1Q6-06 19 50461681 50461681 C T SIGLEC11 Missense_Mutation p.E504K 0.33 tolerated(0.48) benign(0.006) TCGA-D3-A1Q6-06 19 50969491 50969491 G A MYBPC2 3'UTR 0.26 TCGA-D3-A1Q6-06 19 51274520 51274520 C T GPR32 Silent p.F221F 0.24 TCGA-D3-A1Q6-06 19 51381909 51381909 G A KLK2 3'UTR 0.53 TCGA-D3-A1Q6-06 19 51499297 51499297 C T KLK8 3'UTR 0.30 TCGA-D3-A1Q6-06 19 51649346 51649346 C T SIGLEC7 Missense_Mutation p.S332F 0.28 tolerated(0.07) probably_damaging(0.911) TCGA-D3-A1Q6-06 19 51983606 51983606 G A CEACAM18 Silent p.G85G 0.25 TCGA-D3-A1Q6-06 19 53454394 53454394 G A ZNF816 Missense_Mutation p.L212F 0.22 tolerated(0.2) benign(0.067) TCGA-D3-A1Q6-06 19 53668737 53668737 G A ZNF665 Missense_Mutation p.H336Y 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 19 53854516 53854516 C T ZNF845 Silent p.F196F 0.26 TCGA-D3-A1Q6-06 19 53990010 53990010 T G ZNF813 Missense_Mutation p.L47R 0.13 deleterious(0.01) possibly_damaging(0.873) TCGA-D3-A1Q6-06 19 54418660 54418660 T C CACNG7 Missense_Mutation p.F109L 0.26 tolerated(0.52) benign(0.019) TCGA-D3-A1Q6-06 19 54445412 54445412 C T CACNG7 Silent p.F231F 0.30 TCGA-D3-A1Q6-06 19 54823336 54823336 C T LILRA5 Silent p.G69G 0.30 TCGA-D3-A1Q6-06 19 54849228 54849228 G A LILRA4 Missense_Mutation p.P212S 0.25 tolerated(0.07) possibly_damaging(0.537) TCGA-D3-A1Q6-06 19 55048297 55048297 C T KIR3DX1 Silent p.V288V 0.28 TCGA-D3-A1Q6-06 19 55297998 55297998 C T KIR2DL1 3'Flank 0.42 TCGA-D3-A1Q6-06 19 55331186 55331186 C T KIR3DL1 Missense_Mutation p.S125F 0.46 tolerated(0.09) possibly_damaging(0.815) TCGA-D3-A1Q6-06 19 55481484 55481484 C T NLRP2 Missense_Mutation p.S34F 0.31 tolerated(0.07) probably_damaging(0.961) TCGA-D3-A1Q6-06 19 55753748 55753748 C T PPP6R1 Missense_Mutation p.E243K 0.20 deleterious(0.01) possibly_damaging(0.825) TCGA-D3-A1Q6-06 19 55831410 55831410 G T TMEM150B Missense_Mutation p.F107L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 19 55912905 55912905 C T UBE2S Missense_Mutation p.G190R 0.37 tolerated(0.06) benign(0.312) TCGA-D3-A1Q6-06 19 56307471 56307471 G A NLRP11 Missense_Mutation p.P773S 0.33 deleterious(0.02) possibly_damaging(0.745) TCGA-D3-A1Q6-06 19 56481909 56481909 G A NLRP8 Splice_Site p.X794_splice 0.29 TCGA-D3-A1Q6-06 19 57286462 57286462 G A ZIM2 Missense_Mutation p.S393F 0.33 tolerated(1) benign(0.001) TCGA-D3-A1Q6-06 19 57325466 57325466 C T PEG3 Silent p.G1448G 0.35 TCGA-D3-A1Q6-06 19 57641322 57641322 A G USP29 Missense_Mutation p.N427D 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 19 58102402 58102402 A G ZIK1 Missense_Mutation p.K408R 0.32 deleterious(0.01) possibly_damaging(0.45) TCGA-D3-A1Q6-06 19 58724216 58724216 C T ZNF274 Missense_Mutation p.H556Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 19 6432079 6432079 C T SLC25A41 Missense_Mutation p.R115K 0.33 deleterious(0) possibly_damaging(0.789) TCGA-D3-A1Q6-06 19 6684808 6684808 C T C3 Missense_Mutation p.G1336E 0.28 deleterious(0) probably_damaging(0.966) TCGA-D3-A1Q6-06 19 6913831 6913831 G A EMR1 Silent p.T430T 0.31 TCGA-D3-A1Q6-06 19 7589984 7589984 C T MCOLN1 Nonsense_Mutation p.R57* 0.22 TCGA-D3-A1Q6-06 19 8173110 8173110 G A FBN3 Missense_Mutation p.T1544I 0.26 tolerated(0.13) possibly_damaging(0.457) TCGA-D3-A1Q6-06 19 8196549 8196549 C T FBN3 Missense_Mutation p.G627S 0.32 deleterious(0.01) possibly_damaging(0.895) TCGA-D3-A1Q6-06 19 8555575 8555575 C T PRAM1 Silent p.G603G 0.33 TCGA-D3-A1Q6-06 19 8620618 8620618 C T MYO1F Missense_Mutation p.M22I 0.25 deleterious(0) probably_damaging(0.968) TCGA-D3-A1Q6-06 19 9019299 9019299 G A MUC16 Missense_Mutation p.P12530S 0.24 benign(0.095) TCGA-D3-A1Q6-06 19 9059391 9059391 C T MUC16 Missense_Mutation p.R9352K 0.36 unknown(0) TCGA-D3-A1Q6-06 19 9069895 9069895 G A MUC16 Missense_Mutation p.P5851S 0.26 unknown(0) TCGA-D3-A1Q6-06 19 9084701 9084701 C T MUC16 Missense_Mutation p.D2372N 0.45 unknown(0) TCGA-D3-A1Q6-06 19 9324635 9324635 C T OR7D4 Silent p.R293R 0.30 TCGA-D3-A1Q6-06 1 100715332 100715332 C T DBT Silent p.G15G 0.21 TCGA-D3-A1Q6-06 1 101704868 101704868 T C S1PR1 Missense_Mutation p.Y110H 0.23 deleterious(0) possibly_damaging(0.793) TCGA-D3-A1Q6-06 1 10713679 10713679 G A CASZ1 Missense_Mutation p.S812F 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.745) TCGA-D3-A1Q6-06 1 110466450 110466450 C T CSF1 Missense_Mutation p.P403S 0.43 tolerated(0.4) benign(0.441) TCGA-D3-A1Q6-06 1 112999892 112999892 C T CTTNBP2NL Missense_Mutation p.P593L 0.25 deleterious(0) benign(0.024) TCGA-D3-A1Q6-06 1 115168422 115168422 G A DENND2C Missense_Mutation p.P62S 0.30 tolerated(0.35) benign(0.005) TCGA-D3-A1Q6-06 1 115829102 115829102 G A NGF Silent p.F105F 0.56 TCGA-D3-A1Q6-06 1 115829228 115829228 C T NGF Silent p.V63V 0.22 TCGA-D3-A1Q6-06 1 116663652 116663652 C T MAB21L3 Nonsense_Mutation p.Q50* 0.40 TCGA-D3-A1Q6-06 1 116670891 116670891 C T MAB21L3 Silent p.V262V 0.35 TCGA-D3-A1Q6-06 1 118558588 118558588 C T SPAG17 Silent p.T1429T 0.31 TCGA-D3-A1Q6-06 1 119927541 119927541 C T HAO2 Silent p.I142I 0.44 TCGA-D3-A1Q6-06 1 12144548 12144548 G A TNFRSF8 Missense_Mutation p.G31R 0.12 tolerated(0.72) benign(0.031) TCGA-D3-A1Q6-06 1 12343419 12343419 C T VPS13D Nonsense_Mutation p.Q1754* 0.37 TCGA-D3-A1Q6-06 1 12820983 12820983 G A C1orf158 3'UTR 0.42 TCGA-D3-A1Q6-06 1 12980082 12980082 G T PRAMEF7 Missense_Mutation p.C425F 0.13 benign(0.395) TCGA-D3-A1Q6-06 1 14106634 14106634 C T PRDM2 Missense_Mutation p.P782S 0.20 probably_damaging(0.999) TCGA-D3-A1Q6-06 1 14107999 14107999 C T PRDM2 Missense_Mutation p.P1237S 0.36 unknown(0) TCGA-D3-A1Q6-06 1 145273322 145273322 G A NOTCH2NL Missense_Mutation p.G59E 0.11 tolerated(0.16) probably_damaging(0.965) TCGA-D3-A1Q6-06 1 147380200 147380200 G A GJA8 Missense_Mutation p.A40T 0.20 deleterious(0) probably_damaging(0.99) TCGA-D3-A1Q6-06 1 149895414 149895414 G A SF3B4 3'UTR 0.55 TCGA-D3-A1Q6-06 1 150445286 150445286 C T RPRD2 Missense_Mutation p.P1288S 0.44 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A1Q6-06 1 151065782 151065782 C T GABPB2 Missense_Mutation p.H131Y 0.37 deleterious(0.02) benign(0.063) TCGA-D3-A1Q6-06 1 151110496 151110496 G A SEMA6C Silent p.L211L 0.14 TCGA-D3-A1Q6-06 1 152275817 152275817 C T FLG Missense_Mutation p.E3849K 0.24 unknown(0) TCGA-D3-A1Q6-06 1 152799975 152799975 G A LCE1A Silent p.Q9Q 0.18 TCGA-D3-A1Q6-06 1 153346247 153346247 G A S100A12 3'UTR 0.47 TCGA-D3-A1Q6-06 1 153431448 153431448 G A S100A7 Silent p.I14I 0.16 TCGA-D3-A1Q6-06 1 155449607 155449607 G A ASH1L Silent p.L1018L 0.29 TCGA-D3-A1Q6-06 1 155630057 155630057 G A YY1AP1 Silent p.I686I 0.18 TCGA-D3-A1Q6-06 1 1560202 1560202 C T MIB2 Silent p.L264L 0.24 TCGA-D3-A1Q6-06 1 157497579 157497579 G A FCRL5 Silent p.I596I 0.17 TCGA-D3-A1Q6-06 1 157514647 157514647 G A FCRL5 Missense_Mutation p.S178F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q6-06 1 158647515 158647515 C T SPTA1 Missense_Mutation p.G308R 0.30 tolerated(0.15) benign(0.17) TCGA-D3-A1Q6-06 1 159273743 159273743 G A FCER1A Silent p.L34L 0.37 TCGA-D3-A1Q6-06 1 159275833 159275833 C T FCER1A Silent p.F129F 0.14 TCGA-D3-A1Q6-06 1 159505536 159505536 G A OR10J5 Missense_Mutation p.H88Y 0.46 tolerated(1) benign(0) TCGA-D3-A1Q6-06 1 161044155 161044155 C T PVRL4 Missense_Mutation p.E337K 0.36 tolerated(0.68) benign(0.021) TCGA-D3-A1Q6-06 1 161049597 161049597 T C PVRL4 Silent p.E74E 0.41 TCGA-D3-A1Q6-06 1 161172137 161172137 C T NDUFS2 5'UTR 0.50 TCGA-D3-A1Q6-06 1 161599662 161599662 G A FCGR3B Silent p.F111F 0.20 TCGA-D3-A1Q6-06 1 162335313 162335313 C T RP11-565P22.6 Silent p.V39V 0.09 TCGA-D3-A1Q6-06 1 16255923 16255923 C T SPEN Missense_Mutation p.P1063L 0.22 possibly_damaging(0.511) TCGA-D3-A1Q6-06 1 16475117 16475117 G A EPHA2 Silent p.S193S 0.24 TCGA-D3-A1Q6-06 1 171174706 171174706 C T FMO2 Silent p.I372I 0.16 TCGA-D3-A1Q6-06 1 171178045 171178045 C T FMO2 Missense_Mutation p.P457S 0.41 deleterious(0) probably_damaging(0.968) TCGA-D3-A1Q6-06 1 171605701 171605701 C T MYOC Silent p.T293T 0.16 TCGA-D3-A1Q6-06 1 173951933 173951933 A G RC3H1 Missense_Mutation p.F234L 0.42 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q6-06 1 175105030 175105030 G A TNN Missense_Mutation p.R1127K 0.16 tolerated(0.3) benign(0.388) TCGA-D3-A1Q6-06 1 175105031 175105031 G A TNN Silent p.R1127R 0.16 TCGA-D3-A1Q6-06 1 176668481 176668481 C T PAPPA2 Missense_Mutation p.P998S 0.37 deleterious(0) probably_damaging(0.957) TCGA-D3-A1Q6-06 1 177225132 177225132 C T BRINP2 Missense_Mutation p.P116L 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 1 178427145 178427145 C T RASAL2 Silent p.P906P 0.37 TCGA-D3-A1Q6-06 1 181726163 181726163 C T CACNA1E Silent p.F1410F 0.11 TCGA-D3-A1Q6-06 1 186024595 186024595 C T HMCN1 Silent p.S2311S 0.33 TCGA-D3-A1Q6-06 1 186287932 186287932 G A TPR Silent p.F2199F 0.19 TCGA-D3-A1Q6-06 1 19415264 19415264 G A UBR4 Silent p.L4807L 0.41 TCGA-D3-A1Q6-06 1 19415265 19415265 G A UBR4 Silent p.T4806T 0.41 TCGA-D3-A1Q6-06 1 200523671 200523671 T A KIF14 Missense_Mutation p.N1498Y 0.38 deleterious(0) benign(0.379) TCGA-D3-A1Q6-06 1 20072049 20072049 C G TMCO4 Missense_Mutation p.G285R 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 1 200880799 200880799 C T C1orf106 Missense_Mutation p.S393F 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 1 201282610 201282610 C T PKP1 Missense_Mutation p.S208F 0.24 deleterious(0) benign(0.372) TCGA-D3-A1Q6-06 1 201282611 201282611 C T PKP1 Silent p.S208S 0.25 TCGA-D3-A1Q6-06 1 204944489 204944489 C T NFASC Missense_Mutation p.S550F 0.44 deleterious(0) benign(0.248) TCGA-D3-A1Q6-06 1 207103753 207103753 G A PIGR Silent p.S735S 0.09 TCGA-D3-A1Q6-06 1 207793378 207793378 G A CR1 Missense_Mutation p.R2407K 0.37 tolerated(0.28) benign(0.041) TCGA-D3-A1Q6-06 1 209907681 209907681 C T HSD11B1 Missense_Mutation p.H232Y 0.26 tolerated(1) benign(0) TCGA-D3-A1Q6-06 1 209936736 209936736 A T TRAF3IP3 Missense_Mutation p.K202I 0.38 deleterious(0) probably_damaging(0.914) TCGA-D3-A1Q6-06 1 211192238 211192238 C T KCNH1 Missense_Mutation p.D307N 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 1 212870375 212870375 C T BATF3 Silent p.R41R 0.32 TCGA-D3-A1Q6-06 1 212870376 212870376 C T BATF3 Missense_Mutation p.R41K 0.29 tolerated(0.18) probably_damaging(0.992) TCGA-D3-A1Q6-06 1 21564728 21564728 G A ECE1 Missense_Mutation p.P430S 0.41 deleterious(0.04) probably_damaging(1) TCGA-D3-A1Q6-06 1 222922892 222922892 G A FAM177B Silent p.R109R 0.19 TCGA-D3-A1Q6-06 1 223175966 223175966 C T DISP1 Silent p.L409L 0.37 TCGA-D3-A1Q6-06 1 228432088 228432088 C T OBSCN Silent p.A1191A 0.25 TCGA-D3-A1Q6-06 1 230468618 230468618 C T PGBD5 Silent p.L346L 0.18 TCGA-D3-A1Q6-06 1 23519749 23519749 G A HTR1D Silent p.L322L 0.19 TCGA-D3-A1Q6-06 1 23520335 23520335 G A HTR1D Silent p.I126I 0.20 TCGA-D3-A1Q6-06 1 236917339 236917339 C T ACTN2 Silent p.A644A 0.19 TCGA-D3-A1Q6-06 1 23758187 23758187 A G ASAP3 Splice_Site p.X849_splice 0.15 TCGA-D3-A1Q6-06 1 24411063 24411063 C T MYOM3 Nonsense_Mutation p.W622* 0.36 TCGA-D3-A1Q6-06 1 2452592 2452592 C T PANK4 Missense_Mutation p.G124R 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 1 245865806 245865806 G A KIF26B Silent p.E2075E 0.38 TCGA-D3-A1Q6-06 1 247587774 247587774 G A NLRP3 Silent p.E343E 0.18 TCGA-D3-A1Q6-06 1 247587957 247587957 C T NLRP3 Silent p.V404V 0.13 TCGA-D3-A1Q6-06 1 248436400 248436400 G A OR2T33 Silent p.C239C 0.27 TCGA-D3-A1Q6-06 1 248512884 248512884 C G OR14C36 Missense_Mutation p.L270V 0.16 tolerated(0.05) benign(0.012) TCGA-D3-A1Q6-06 1 248844962 248844962 G A OR14I1 Missense_Mutation p.S215F 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 1 25712296 25712296 C T RHCE Missense_Mutation p.V327I 0.20 deleterious(0.02) benign(0.001) TCGA-D3-A1Q6-06 1 31189098 31189098 C T MATN1 Missense_Mutation p.E289K 0.23 tolerated(0.29) benign(0.057) TCGA-D3-A1Q6-06 1 32265673 32265673 G A SPOCD1 Missense_Mutation p.P558S 0.32 tolerated(0.19) benign(0.227) TCGA-D3-A1Q6-06 1 33145319 33145321 TTG - RBBP4 3'UTR 0.42 TCGA-D3-A1Q6-06 1 35223138 35223138 C T GJB5 Silent p.F69F 0.41 TCGA-D3-A1Q6-06 1 36752393 36752393 C T THRAP3 Missense_Mutation p.R188W 0.39 tolerated(0.07) unknown(0) TCGA-D3-A1Q6-06 1 36859698 36859698 G A LSM10 Silent p.T11T 0.34 TCGA-D3-A1Q6-06 1 37271845 37271845 C T GRIK3 Missense_Mutation p.G725D 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q6-06 1 40656510 40656510 C T RLF Silent p.F153F 0.31 TCGA-D3-A1Q6-06 1 42048624 42048624 G A HIVEP3 Silent p.S615S 0.45 TCGA-D3-A1Q6-06 1 43909455 43909455 C T SZT2 Missense_Mutation p.S2881L 0.41 deleterious(0) probably_damaging(0.942) TCGA-D3-A1Q6-06 1 45363041 45363041 G A EIF2B3 Silent p.F214F 0.19 TCGA-D3-A1Q6-06 1 45796895 45796895 C T MUTYH Missense_Mutation p.E476K 0.40 tolerated(0.13) benign(0.055) TCGA-D3-A1Q6-06 1 46180070 46180070 G A IPP Missense_Mutation p.P460S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 1 46656326 46656326 G A POMGNT1 Intron 0.47 TCGA-D3-A1Q6-06 1 47685646 47685646 C T TAL1 Missense_Mutation p.E248K 0.39 deleterious(0.03) possibly_damaging(0.53) TCGA-D3-A1Q6-06 1 53287191 53287191 C T ZYG11B Missense_Mutation p.P709S 0.19 tolerated(0.36) probably_damaging(0.994) TCGA-D3-A1Q6-06 1 57173401 57173401 C T PRKAA2 3'UTR 0.17 TCGA-D3-A1Q6-06 1 57406649 57406649 A G C8B Missense_Mutation p.V424A 0.22 tolerated(0.12) benign(0.05) TCGA-D3-A1Q6-06 1 57406657 57406657 C T C8B Silent p.E421E 0.25 TCGA-D3-A1Q6-06 1 60491080 60491080 C T C1orf87 Missense_Mutation p.E374K 0.18 tolerated(0.14) probably_damaging(0.989) TCGA-D3-A1Q6-06 1 65860698 65860698 C T DNAJC6 Missense_Mutation p.P674L 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A1Q6-06 1 71418599 71418599 C T PTGER3 Silent p.K416K 0.17 TCGA-D3-A1Q6-06 1 72241922 72241922 G A NEGR1 Silent p.V156V 0.46 TCGA-D3-A1Q6-06 1 75072375 75072375 C T C1orf173 Missense_Mutation p.E467K 0.35 deleterious(0.05) benign(0.31) TCGA-D3-A1Q6-06 1 7890087 7890087 C T PER3 Missense_Mutation p.P1018L 0.16 tolerated_low_confidence(0.82) probably_damaging(0.995) TCGA-D3-A1Q6-06 1 82456404 82456404 C T LPHN2 Missense_Mutation p.H1263Y 0.25 tolerated_low_confidence(1) possibly_damaging(0.844) TCGA-D3-A1Q6-06 1 89573959 89573959 G A GBP2 Missense_Mutation p.L559F 0.22 deleterious(0.04) benign(0.237) TCGA-D3-A1Q6-06 1 9034702 9034702 T C CA6 3'Flank 0.20 TCGA-D3-A1Q6-06 1 94528755 94528755 G A ABCA4 Missense_Mutation p.P558L 0.21 tolerated(0.06) possibly_damaging(0.9) TCGA-D3-A1Q6-06 20 1559237 1559237 G A RP4-576H24.4 Silent p.I59I 0.19 TCGA-D3-A1Q6-06 20 23432469 23432469 T A CST11 Missense_Mutation p.E106V 0.19 deleterious(0) probably_damaging(0.934) TCGA-D3-A1Q6-06 20 30672294 30672294 C T HCK Silent p.S261S 0.18 TCGA-D3-A1Q6-06 20 3128872 3128872 A G FASTKD5 Missense_Mutation p.V282A 0.15 deleterious(0) possibly_damaging(0.459) TCGA-D3-A1Q6-06 20 31623453 31623453 G A BPIFB6 Silent p.V184V 0.33 TCGA-D3-A1Q6-06 20 33539607 33539607 C T GSS Missense_Mutation p.E17K 0.23 deleterious(0.04) benign(0.026) TCGA-D3-A1Q6-06 20 35545197 35545197 A G SAMHD1 Silent p.D330D 0.41 TCGA-D3-A1Q6-06 20 36375000 36375000 G A CTNNBL1 Missense_Mutation p.D153N 0.36 deleterious(0) possibly_damaging(0.545) TCGA-D3-A1Q6-06 20 40738973 40738973 C T PTPRT Missense_Mutation p.S1085N 0.17 deleterious(0.01) benign(0.016) TCGA-D3-A1Q6-06 20 40790158 40790158 G A PTPRT Missense_Mutation p.S839F 0.26 deleterious(0) benign(0.1) TCGA-D3-A1Q6-06 20 42806612 42806612 C T JPH2 Intron 0.39 TCGA-D3-A1Q6-06 20 43042392 43042392 C T HNF4A Silent p.S148S 0.15 TCGA-D3-A1Q6-06 20 43052831 43052831 C T HNF4A Nonsense_Mutation p.Q356* 0.19 TCGA-D3-A1Q6-06 20 4764850 4764850 C T RASSF2 3'UTR 0.43 TCGA-D3-A1Q6-06 20 49366992 49366992 C T PARD6B Silent p.L362L 0.43 TCGA-D3-A1Q6-06 20 51872850 51872850 C T TSHZ2 Silent p.F951F 0.38 TCGA-D3-A1Q6-06 20 54824080 54824080 C T MC3R Silent p.L61L 0.31 TCGA-D3-A1Q6-06 20 57767265 57767265 G A ZNF831 Silent p.L397L 0.33 TCGA-D3-A1Q6-06 20 57769665 57769665 G A ZNF831 Silent p.E1197E 0.50 TCGA-D3-A1Q6-06 20 58490535 58490535 T G SYCP2 Missense_Mutation p.E195A 0.21 deleterious(0) possibly_damaging(0.74) TCGA-D3-A1Q6-06 20 61471990 61471990 G A COL9A3 Missense_Mutation p.G654E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 20 61471991 61471991 G A COL9A3 Silent p.G654G 0.48 TCGA-D3-A1Q6-06 20 62203460 62203460 C T HELZ2 Splice_Site p.X93_splice 0.46 TCGA-D3-A1Q6-06 20 860423 860423 C T ANGPT4 Silent p.V340V 0.30 TCGA-D3-A1Q6-06 20 9424641 9424641 C T PLCB4 Silent p.I914I 0.10 TCGA-D3-A1Q6-06 21 19628953 19628953 C T CHODL Silent p.L69L 0.32 TCGA-D3-A1Q6-06 21 43327113 43327113 G A C2CD2 Missense_Mutation p.P436S 0.22 deleterious(0.04) benign(0.156) TCGA-D3-A1Q6-06 21 44152031 44152031 C T PDE9A Silent p.C138C 0.12 TCGA-D3-A1Q6-06 21 45855065 45855065 C T TRPM2 Silent p.F1342F 0.41 TCGA-D3-A1Q6-06 21 46032761 46032761 C T KRTAP10-8 Silent p.F248F 0.23 TCGA-D3-A1Q6-06 21 47690322 47690322 A T MCM3AP Missense_Mutation p.F874Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 21 47775381 47775381 C T PCNT Silent p.R592R 0.59 TCGA-D3-A1Q6-06 21 48068404 48068404 G T PRMT2 Missense_Mutation p.R121L 0.31 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q6-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.08 TCGA-D3-A1Q6-06 22 16287310 16287310 C T POTEH Silent p.K192K 0.14 TCGA-D3-A1Q6-06 22 16287902 16287902 G A POTEH 5'UTR 0.25 TCGA-D3-A1Q6-06 22 22024875 22024875 C T PPIL2 Missense_Mutation p.R35C 0.37 deleterious(0) possibly_damaging(0.899) TCGA-D3-A1Q6-06 22 23162191 23162191 G A IGLV3-9 Missense_Mutation p.R95K 0.40 deleterious(0.05) benign(0.014) TCGA-D3-A1Q6-06 22 23237554 23237554 G A IGLL5 Splice_Site p.X109_splice 0.47 TCGA-D3-A1Q6-06 22 24494078 24494078 C T CABIN1 Missense_Mutation p.S1347F 0.18 deleterious(0) possibly_damaging(0.898) TCGA-D3-A1Q6-06 22 28307087 28307087 C T PITPNB Missense_Mutation p.G21E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 22 30806637 30806637 G A SEC14L2 Silent p.E211E 0.26 TCGA-D3-A1Q6-06 22 33254006 33254006 C T TIMP3 Missense_Mutation p.R107C 0.38 deleterious(0) probably_damaging(0.983) TCGA-D3-A1Q6-06 22 36537305 36537305 C T APOL3 Silent p.E384E 0.33 TCGA-D3-A1Q6-06 22 37470731 37470731 G A TMPRSS6 Missense_Mutation p.L463F 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A1Q6-06 22 38823376 38823376 G A KCNJ4 Silent p.F254F 0.10 TCGA-D3-A1Q6-06 22 39078936 39078936 C T TOMM22 Missense_Mutation p.L97F 0.19 deleterious(0.04) probably_damaging(0.951) TCGA-D3-A1Q6-06 22 43976449 43976449 C T EFCAB6 Silent p.K1041K 0.17 TCGA-D3-A1Q6-06 22 44371952 44371952 C T SAMM50 Silent p.T222T 0.28 TCGA-D3-A1Q6-06 22 44386179 44386179 T G SAMM50 Silent p.A419A 0.18 TCGA-D3-A1Q6-06 22 46776824 46776824 G A CELSR1 Missense_Mutation p.P2373S 0.15 deleterious(0.04) possibly_damaging(0.803) TCGA-D3-A1Q6-06 2 100925618 100925618 G A LONRF2 Missense_Mutation p.A250V 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 2 101587467 101587467 G A NPAS2 Silent p.R357R 0.33 TCGA-D3-A1Q6-06 2 107460302 107460302 G A ST6GAL2 Silent p.S44S 0.38 TCGA-D3-A1Q6-06 2 109384509 109384509 C T RANBP2 Missense_Mutation p.P2505L 0.37 deleterious(0.02) benign(0.034) TCGA-D3-A1Q6-06 2 112751933 112751933 G A MERTK Missense_Mutation p.G468R 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q6-06 2 113940600 113940600 C T PSD4 Silent p.P189P 0.39 TCGA-D3-A1Q6-06 2 118688702 118688702 T A CCDC93 Nonsense_Mutation p.K585* 0.37 TCGA-D3-A1Q6-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.36 TCGA-D3-A1Q6-06 2 128281289 128281289 G A IWS1 Missense_Mutation p.S38F 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A1Q6-06 2 131520776 131520776 C T AMER3 Silent p.P377P 0.36 TCGA-D3-A1Q6-06 2 136433015 136433015 C T R3HDM1 Nonsense_Mutation p.Q721* 0.33 TCGA-D3-A1Q6-06 2 138033575 138033575 G A THSD7B Missense_Mutation p.G827R 0.40 deleterious(0) probably_damaging(0.979) TCGA-D3-A1Q6-06 2 138163337 138163337 G A THSD7B Silent p.T885T 0.21 TCGA-D3-A1Q6-06 2 141777559 141777559 C T LRP1B Silent p.Q634Q 0.42 TCGA-D3-A1Q6-06 2 149227571 149227571 T C MBD5 Silent p.L687L 0.19 TCGA-D3-A1Q6-06 2 1507836 1507836 G A TPO Missense_Mutation p.G835R 0.28 deleterious(0.02) benign(0.208) TCGA-D3-A1Q6-06 2 160604811 160604811 C T MARCH7 Missense_Mutation p.P337L 0.36 deleterious(0.03) benign(0.002) TCGA-D3-A1Q6-06 2 165997216 165997216 G A SCN3A Missense_Mutation p.S655F 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 2 166020363 166020363 G A SCN3A Intron 0.18 TCGA-D3-A1Q6-06 2 166848506 166848506 G A SCN1A Missense_Mutation p.S1760F 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 2 167168253 167168253 G A SCN9A Missense_Mutation p.P5L 0.29 tolerated_low_confidence(0.6) benign(0.002) TCGA-D3-A1Q6-06 2 170019101 170019101 G A LRP2 Missense_Mutation p.P3923L 0.33 possibly_damaging(0.631) TCGA-D3-A1Q6-06 2 170060581 170060581 C T LRP2 Missense_Mutation p.G2639E 0.28 benign(0.15) TCGA-D3-A1Q6-06 2 170592141 170592141 A G KLHL23 Missense_Mutation p.K206R 0.27 tolerated(0.65) benign(0.016) TCGA-D3-A1Q6-06 2 179425768 179425768 C T TTN Missense_Mutation p.R28364Q 0.24 TCGA-D3-A1Q6-06 2 179576050 179576050 G A TTN Nonsense_Mutation p.R9305* 0.33 TCGA-D3-A1Q6-06 2 179584294 179584294 G A TTN Silent p.S7975S 0.27 TCGA-D3-A1Q6-06 2 179602902 179602902 G A TTN Silent p.L4760L 0.28 TCGA-D3-A1Q6-06 2 179614007 179614007 G A TTN Intron 0.29 TCGA-D3-A1Q6-06 2 179614008 179614008 G A TTN Intron 0.27 TCGA-D3-A1Q6-06 2 179640909 179640909 G A TTN Silent p.I1894I 0.26 TCGA-D3-A1Q6-06 2 179645916 179645916 C T TTN Missense_Mutation p.G1152E 0.39 TCGA-D3-A1Q6-06 2 1842995 1842995 C T MYT1L Silent p.T1000T 0.28 TCGA-D3-A1Q6-06 2 185803733 185803733 C T ZNF804A Missense_Mutation p.P1204S 0.32 tolerated(0.1) probably_damaging(0.992) TCGA-D3-A1Q6-06 2 18736667 18736667 G A RDH14 Silent p.L267L 0.32 TCGA-D3-A1Q6-06 2 189850436 189850436 G A COL3A1 Missense_Mutation p.G127R 0.23 unknown(0) TCGA-D3-A1Q6-06 2 189871091 189871091 C T COL3A1 Silent p.G1038G 0.28 TCGA-D3-A1Q6-06 2 191796338 191796338 C T GLS Missense_Mutation p.P542L 0.34 deleterious(0.01) possibly_damaging(0.748) TCGA-D3-A1Q6-06 2 197090531 197090531 G A HECW2 Silent p.F1327F 0.32 TCGA-D3-A1Q6-06 2 206608133 206608133 G A NRP2 Missense_Mutation p.G500S 0.28 deleterious(0.03) possibly_damaging(0.613) TCGA-D3-A1Q6-06 2 209101890 209101890 C T IDH1 Silent p.V386V 0.40 TCGA-D3-A1Q6-06 2 21228808 21228808 G A APOB Silent p.F3644F 0.34 TCGA-D3-A1Q6-06 2 21235060 21235060 G A APOB Silent p.S1560S 0.29 TCGA-D3-A1Q6-06 2 217279966 217279966 C T SMARCAL1 Missense_Mutation p.S180F 0.28 tolerated(0.26) benign(0.002) TCGA-D3-A1Q6-06 2 219903182 219903182 G A CCDC108 Missense_Mutation p.S91F 0.33 deleterious_low_confidence(0.02) benign(0.063) TCGA-D3-A1Q6-06 2 219903229 219903229 G A CCDC108 Silent p.V75V 0.40 TCGA-D3-A1Q6-06 2 220167205 220167205 G A PTPRN Silent p.S216S 0.34 TCGA-D3-A1Q6-06 2 220439451 220439451 C T INHA Silent p.L102L 0.38 TCGA-D3-A1Q6-06 2 222428737 222428737 C T EPHA4 Silent p.K179K 0.30 TCGA-D3-A1Q6-06 2 228137770 228137770 G A COL4A3 Missense_Mutation p.G622R 0.25 unknown(0) TCGA-D3-A1Q6-06 2 228137771 228137771 G A COL4A3 Missense_Mutation p.G622E 0.25 unknown(0) TCGA-D3-A1Q6-06 2 228882950 228882950 C T SPHKAP Missense_Mutation p.E874K 0.33 deleterious(0.05) benign(0.15) TCGA-D3-A1Q6-06 2 230456412 230456412 G A DNER Missense_Mutation p.P157S 0.25 tolerated(0.25) benign(0.004) TCGA-D3-A1Q6-06 2 231090546 231090546 C T SP140 5'UTR 0.28 TCGA-D3-A1Q6-06 2 233396072 233396072 G A CHRND Silent p.K277K 0.27 TCGA-D3-A1Q6-06 2 238274599 238274599 G A COL6A3 Silent p.S1860S 0.37 TCGA-D3-A1Q6-06 2 241514990 241514990 C T RNPEPL1 Silent p.F260F 0.29 TCGA-D3-A1Q6-06 2 241973285 241973285 C T SNED1 Missense_Mutation p.A212V 0.36 deleterious(0.02) probably_damaging(0.986) TCGA-D3-A1Q6-06 2 24929663 24929663 G A NCOA1 Missense_Mutation p.G442R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 2 24930526 24930526 C T NCOA1 Silent p.S729S 0.48 TCGA-D3-A1Q6-06 2 25973192 25973192 G A ASXL2 Silent p.S411S 0.29 TCGA-D3-A1Q6-06 2 27147817 27147817 C T DPYSL5 Silent p.S108S 0.20 TCGA-D3-A1Q6-06 2 272289 272289 C T ACP1 Missense_Mutation p.A72V 0.33 deleterious(0.03) benign(0.001) TCGA-D3-A1Q6-06 2 29063175 29063175 C A SPDYA Silent p.L230L 0.26 TCGA-D3-A1Q6-06 2 29084142 29084142 C G TRMT61B Missense_Mutation p.V279L 0.21 deleterious(0.03) benign(0.006) TCGA-D3-A1Q6-06 2 30966384 30966384 G A CAPN13 Missense_Mutation p.S437L 0.35 tolerated(0.36) benign(0.004) TCGA-D3-A1Q6-06 2 32824895 32824895 C T BIRC6 Silent p.P4640P 0.35 TCGA-D3-A1Q6-06 2 32824896 32824896 C T BIRC6 Missense_Mutation p.P4641S 0.34 probably_damaging(1) TCGA-D3-A1Q6-06 2 45663 45663 C T FAM110C Silent p.S241S 0.45 TCGA-D3-A1Q6-06 2 45715432 45715432 C T SRBD1 Missense_Mutation p.S638N 0.39 deleterious(0) probably_damaging(0.979) TCGA-D3-A1Q6-06 2 46842315 46842315 G A PIGF 5'UTR 0.30 TCGA-D3-A1Q6-06 2 50724557 50724557 G A NRXN1 Silent p.F971F 0.38 TCGA-D3-A1Q6-06 2 69049560 69049560 C T ARHGAP25 Missense_Mutation p.P430L 0.32 tolerated(0.67) benign(0.001) TCGA-D3-A1Q6-06 2 75425772 75425772 C T TACR1 Missense_Mutation p.E97K 0.25 tolerated(0.11) probably_damaging(0.986) TCGA-D3-A1Q6-06 2 75745192 75745192 G A EVA1A Silent p.S25S 0.29 TCGA-D3-A1Q6-06 2 89521289 89521289 G A IGKV2-28 Missense_Mutation p.P84S 0.33 tolerated(0.13) benign(0.217) TCGA-D3-A1Q6-06 2 97363284 97363284 A T FER1L5 RNA 0.45 TCGA-D3-A1Q6-06 2 99012882 99012882 A C CNGA3 Missense_Mutation p.I417L 0.32 deleterious(0.03) benign(0.004) TCGA-D3-A1Q6-06 3 100354610 100354610 C T GPR128 Silent p.I179I 0.18 TCGA-D3-A1Q6-06 3 101136570 101136570 G A SENP7 Silent p.L117L 0.22 TCGA-D3-A1Q6-06 3 10312420 10312420 C T TATDN2 Silent p.F518F 0.12 TCGA-D3-A1Q6-06 3 10401606 10401606 G A ATP2B2 Missense_Mutation p.R621C 0.37 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A1Q6-06 3 10442635 10442635 A C ATP2B2 Splice_Site p.X261_splice 0.39 TCGA-D3-A1Q6-06 3 112357148 112357148 C T CCDC80 Silent p.K535K 0.25 TCGA-D3-A1Q6-06 3 120347108 120347108 G A HGD 3'UTR 0.25 TCGA-D3-A1Q6-06 3 121712024 121712024 C T ILDR1 Silent p.R524R 0.67 TCGA-D3-A1Q6-06 3 121712700 121712700 G A ILDR1 Missense_Mutation p.A299V 0.17 deleterious(0.03) possibly_damaging(0.767) TCGA-D3-A1Q6-06 3 122002713 122002713 C T CASR Missense_Mutation p.R648C 0.42 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q6-06 3 122942477 122942477 C T SEC22A Missense_Mutation p.S85F 0.15 deleterious(0) possibly_damaging(0.691) TCGA-D3-A1Q6-06 3 124376296 124376296 G A KALRN Missense_Mutation p.G46D 0.25 deleterious(0.01) benign(0.443) TCGA-D3-A1Q6-06 3 126270960 126270960 G A C3orf22 Missense_Mutation p.S32L 0.40 deleterious(0) possibly_damaging(0.776) TCGA-D3-A1Q6-06 3 130095577 130095577 C T COL6A5 Missense_Mutation p.L189F 0.27 tolerated(0.21) possibly_damaging(0.562) TCGA-D3-A1Q6-06 3 132063801 132063801 G A ACPP Missense_Mutation p.A227T 0.48 deleterious(0) probably_damaging(0.923) TCGA-D3-A1Q6-06 3 136087951 136087951 C T STAG1 Missense_Mutation p.M848I 0.32 tolerated(0.46) benign(0.001) TCGA-D3-A1Q6-06 3 138668430 138668430 C T C3orf72 Missense_Mutation p.P57S 0.20 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-D3-A1Q6-06 3 140185516 140185516 G A CLSTN2 Silent p.K429K 0.15 TCGA-D3-A1Q6-06 3 14523300 14523300 C T SLC6A6 Missense_Mutation p.P558L 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q6-06 3 150421441 150421441 G A FAM194A Missense_Mutation p.T82M 0.41 tolerated_low_confidence(0.54) benign(0) TCGA-D3-A1Q6-06 3 151156353 151156353 C T IGSF10 Missense_Mutation p.G1999E 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 3 151165848 151165848 C T IGSF10 Missense_Mutation p.G641S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 3 155199869 155199869 C T PLCH1 Missense_Mutation p.D1324N 0.40 tolerated_low_confidence(0.35) benign(0.003) TCGA-D3-A1Q6-06 3 161147222 161147222 C T RP11-3P17.4 RNA 0.50 TCGA-D3-A1Q6-06 3 16312571 16312571 C T OXNAD1 Silent p.L38L 0.10 TCGA-D3-A1Q6-06 3 164737392 164737392 C T SI Missense_Mutation p.G1141S 0.39 tolerated(0.12) probably_damaging(0.982) TCGA-D3-A1Q6-06 3 167510406 167510406 G A SERPINI1 Silent p.R170R 0.28 TCGA-D3-A1Q6-06 3 17051375 17051375 G A PLCL2 Silent p.K53K 0.27 TCGA-D3-A1Q6-06 3 17051494 17051494 C T PLCL2 Missense_Mutation p.S93F 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 3 180685857 180685857 C T FXR1 Missense_Mutation p.S406F 0.20 deleterious(0.03) probably_damaging(0.938) TCGA-D3-A1Q6-06 3 182947524 182947524 G A MCF2L2 Missense_Mutation p.P659S 0.16 tolerated(0.2) probably_damaging(0.971) TCGA-D3-A1Q6-06 3 183209862 183209862 G A KLHL6 Silent p.I573I 0.17 TCGA-D3-A1Q6-06 3 184073266 184073266 G A CLCN2 Missense_Mutation p.R408C 0.13 deleterious(0) possibly_damaging(0.832) TCGA-D3-A1Q6-06 3 193052888 193052888 C T ATP13A5 Missense_Mutation p.G315E 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q6-06 3 193068880 193068880 G A ATP13A5 Silent p.V239V 0.44 TCGA-D3-A1Q6-06 3 2908472 2908472 C T CNTN4 Missense_Mutation p.S164F 0.30 tolerated(0.36) benign(0.179) TCGA-D3-A1Q6-06 3 2908473 2908473 C T CNTN4 Silent p.S164S 0.31 TCGA-D3-A1Q6-06 3 30032786 30032786 G A RBMS3 Intron 0.26 TCGA-D3-A1Q6-06 3 38126833 38126833 C T DLEC1 Missense_Mutation p.P444S 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 3 38349157 38349157 C T SLC22A14 Missense_Mutation p.R241C 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A1Q6-06 3 38802219 38802219 C T SCN10A Silent p.K301K 0.35 TCGA-D3-A1Q6-06 3 38926811 38926811 G A SCN11A Missense_Mutation p.P1011L 0.44 tolerated(0.16) benign(0.026) TCGA-D3-A1Q6-06 3 40429543 40429543 G A ENTPD3 5'UTR 0.29 TCGA-D3-A1Q6-06 3 42132956 42132956 C T TRAK1 5'UTR 0.41 TCGA-D3-A1Q6-06 3 42727348 42727348 G A KLHL40 Missense_Mutation p.D80N 0.15 tolerated(0.92) benign(0.021) TCGA-D3-A1Q6-06 3 47476599 47476599 C T SCAP Missense_Mutation p.G51R 0.23 deleterious(0) probably_damaging(0.986) TCGA-D3-A1Q6-06 3 4829647 4829647 G A ITPR1 Missense_Mutation p.R2196Q 0.27 deleterious(0) benign(0.361) TCGA-D3-A1Q6-06 3 48457770 48457770 G A PLXNB1 Silent p.H1155H 0.21 TCGA-D3-A1Q6-06 3 48638486 48638486 C T UQCRC1 Nonsense_Mutation p.W296* 0.17 TCGA-D3-A1Q6-06 3 48638487 48638487 C T UQCRC1 Nonsense_Mutation p.W296* 0.17 TCGA-D3-A1Q6-06 3 48669416 48669416 C T SLC26A6 Missense_Mutation p.R216Q 0.18 deleterious(0) probably_damaging(0.932) TCGA-D3-A1Q6-06 3 49050182 49050182 C T WDR6 Silent p.F435F 0.25 TCGA-D3-A1Q6-06 3 49066223 49066223 G A IMPDH2 Missense_Mutation p.P39S 0.32 deleterious(0) probably_damaging(0.92) TCGA-D3-A1Q6-06 3 49166499 49166499 G A LAMB2 Missense_Mutation p.P562L 0.21 tolerated(0.37) benign(0.221) TCGA-D3-A1Q6-06 3 50645375 50645375 C T CISH Missense_Mutation p.R164K 0.17 tolerated(0.69) benign(0.023) TCGA-D3-A1Q6-06 3 51864682 51864682 C T IQCF3 Silent p.R110R 0.11 TCGA-D3-A1Q6-06 3 52553306 52553306 G A STAB1 Silent p.A1687A 0.35 TCGA-D3-A1Q6-06 3 54913095 54913095 G A CACNA2D3 Silent p.V587V 0.44 TCGA-D3-A1Q6-06 3 56695032 56695032 C T FAM208A Missense_Mutation p.D392N 0.32 tolerated(0.06) benign(0.333) TCGA-D3-A1Q6-06 3 69111006 69111006 G A UBA3 Missense_Mutation p.S290L 0.12 tolerated(0.14) benign(0.007) TCGA-D3-A1Q6-06 3 7456807 7456807 G A GRM7 Silent p.T377T 0.40 TCGA-D3-A1Q6-06 3 7620408 7620408 C T GRM7 Silent p.T605T 0.33 TCGA-D3-A1Q6-06 3 77599977 77599977 T C ROBO2 Silent p.L372L 0.30 TCGA-D3-A1Q6-06 3 77607202 77607202 C T ROBO2 Missense_Mutation p.P463S 0.21 deleterious(0.02) possibly_damaging(0.876) TCGA-D3-A1Q6-06 3 78656137 78656137 G A ROBO1 Missense_Mutation p.S1497F 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A1Q6-06 3 89259646 89259646 G A EPHA3 Missense_Mutation p.E264K 0.36 deleterious(0.01) benign(0.254) TCGA-D3-A1Q6-06 3 97311469 97311469 C T EPHA6 Silent p.A800A 0.38 TCGA-D3-A1Q6-06 4 100232022 100232022 C T ADH1B Missense_Mutation p.D335N 0.12 deleterious(0.02) possibly_damaging(0.861) TCGA-D3-A1Q6-06 4 114275374 114275374 C T ANK2 Missense_Mutation p.S1867L 0.27 benign(0.272) TCGA-D3-A1Q6-06 4 115597161 115597161 T C UGT8 Missense_Mutation p.I448T 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 4 121957863 121957863 C T NDNF Silent p.L421L 0.48 TCGA-D3-A1Q6-06 4 122682754 122682754 C T TMEM155 Missense_Mutation p.G51R 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 4 123317444 123317444 C T ADAD1 Silent p.I212I 0.18 TCGA-D3-A1Q6-06 4 126328139 126328139 G A FAT4 Silent p.R1804R 0.43 TCGA-D3-A1Q6-06 4 126336743 126336743 G A FAT4 Missense_Mutation p.G2209S 0.29 probably_damaging(1) TCGA-D3-A1Q6-06 4 126371309 126371309 C T FAT4 Silent p.S3046S 0.42 TCGA-D3-A1Q6-06 4 126372516 126372516 G A FAT4 Missense_Mutation p.E3449K 0.10 benign(0.393) TCGA-D3-A1Q6-06 4 126411861 126411861 C T FAT4 Silent p.I4628I 0.18 TCGA-D3-A1Q6-06 4 139100499 139100499 A G SLC7A11 Missense_Mutation p.V439A 0.29 deleterious(0.01) probably_damaging(0.927) TCGA-D3-A1Q6-06 4 149075934 149075934 G A NR3C2 Silent p.I711I 0.41 TCGA-D3-A1Q6-06 4 155531292 155531292 C T FGG Silent p.K153K 0.48 TCGA-D3-A1Q6-06 4 166978338 166978338 G A TLL1 Missense_Mutation p.E575K 0.30 tolerated(0.11) benign(0.016) TCGA-D3-A1Q6-06 4 17805749 17805749 G A DCAF16 Missense_Mutation p.P6S 0.23 tolerated_low_confidence(0.68) possibly_damaging(0.803) TCGA-D3-A1Q6-06 4 185599530 185599530 C T PRIMPOL Missense_Mutation p.S330F 0.38 probably_damaging(0.936) TCGA-D3-A1Q6-06 4 187205274 187205274 C T F11 Silent p.I388I 0.32 TCGA-D3-A1Q6-06 4 20619119 20619119 G A SLIT2 Silent p.L1398L 0.40 TCGA-D3-A1Q6-06 4 3519815 3519815 G A LRPAP1 Nonsense_Mutation p.Q233* 0.21 TCGA-D3-A1Q6-06 4 3519816 3519816 G A LRPAP1 Silent p.N232N 0.22 TCGA-D3-A1Q6-06 4 4199131 4199131 G A OTOP1 Missense_Mutation p.S477F 0.38 tolerated(0.32) benign(0.013) TCGA-D3-A1Q6-06 4 42414996 42414996 G A ATP8A1 Silent p.I1144I 0.21 TCGA-D3-A1Q6-06 4 42509061 42509061 C T ATP8A1 Silent p.G686G 0.35 TCGA-D3-A1Q6-06 4 47322220 47322220 G A GABRB1 Missense_Mutation p.E180K 0.23 deleterious(0.03) possibly_damaging(0.72) TCGA-D3-A1Q6-06 4 47907345 47907345 A G NFXL1 Missense_Mutation p.L142S 0.12 deleterious(0) probably_damaging(0.98) TCGA-D3-A1Q6-06 4 48990511 48990511 C T CWH43 Missense_Mutation p.L21F 0.31 tolerated(0.07) possibly_damaging(0.73) TCGA-D3-A1Q6-06 4 49009219 49009219 G A CWH43 Silent p.G354G 0.45 TCGA-D3-A1Q6-06 4 57797783 57797783 C T REST Missense_Mutation p.S920L 0.23 tolerated(0.21) benign(0.003) TCGA-D3-A1Q6-06 4 69693052 69693052 C T UGT2B10 Missense_Mutation p.P365S 0.33 deleterious(0.01) possibly_damaging(0.721) TCGA-D3-A1Q6-06 4 71507923 71507923 G A ENAM Silent p.G260G 0.37 TCGA-D3-A1Q6-06 4 75485914 75485914 G A AREGB Missense_Mutation p.M191I 0.36 tolerated(0.44) benign(0.002) TCGA-D3-A1Q6-06 4 75937974 75937974 G A PARM1 Missense_Mutation p.G128D 0.17 tolerated(0.22) possibly_damaging(0.675) TCGA-D3-A1Q6-06 4 77288456 77288456 C T CCDC158 Silent p.K607K 0.37 TCGA-D3-A1Q6-06 4 77288720 77288720 G A CCDC158 Silent p.I519I 0.38 TCGA-D3-A1Q6-06 4 81283940 81283940 A G C4orf22 Silent p.L48L 0.29 TCGA-D3-A1Q6-06 4 86844906 86844906 G A ARHGAP24 Nonsense_Mutation p.W125* 0.35 TCGA-D3-A1Q6-06 4 95229885 95229885 C T HPGDS Missense_Mutation p.G79E 0.40 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q6-06 4 9892267 9892267 G A SLC2A9 Silent p.F394F 0.16 TCGA-D3-A1Q6-06 5 101815889 101815889 C T SLCO6A1 Missense_Mutation p.G203E 0.31 tolerated(1) benign(0.004) TCGA-D3-A1Q6-06 5 11397202 11397202 G A CTNND2 Missense_Mutation p.P185S 0.22 tolerated(0.35) benign(0.001) TCGA-D3-A1Q6-06 5 121786808 121786808 G A SNCAIP Missense_Mutation p.E756K 0.19 tolerated(0.07) probably_damaging(0.995) TCGA-D3-A1Q6-06 5 127730894 127730894 C T FBN2 Silent p.T384T 0.21 TCGA-D3-A1Q6-06 5 130788794 130788794 A - RAPGEF6 Frame_Shift_Del p.R1052Efs*2 0.10 TCGA-D3-A1Q6-06 5 132939584 132939584 C T FSTL4 Missense_Mutation p.G31S 0.17 tolerated_low_confidence(0.54) benign(0.004) TCGA-D3-A1Q6-06 5 13770895 13770895 C T DNAH5 Missense_Mutation p.G3190R 0.26 benign(0) TCGA-D3-A1Q6-06 5 13829667 13829667 C T DNAH5 Silent p.R2132R 0.12 TCGA-D3-A1Q6-06 5 140011896 140011896 G A CD14 Nonsense_Mutation p.Q225* 0.20 TCGA-D3-A1Q6-06 5 140175729 140175729 C T PCDHA2 Missense_Mutation p.P394S 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.757) TCGA-D3-A1Q6-06 5 140183149 140183149 G A PCDHA3 Silent p.Q789Q 0.48 TCGA-D3-A1Q6-06 5 140222135 140222135 A T PCDHA8 Missense_Mutation p.D410V 0.17 deleterious_low_confidence(0.01) benign(0.398) TCGA-D3-A1Q6-06 5 140249340 140249340 G A PCDHA11 Missense_Mutation p.G218R 0.23 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-D3-A1Q6-06 5 140257140 140257140 G A PCDHA12 Missense_Mutation p.D695N 0.16 tolerated_low_confidence(0.1) benign(0.092) TCGA-D3-A1Q6-06 5 140433100 140433100 G A PCDHB1 Missense_Mutation p.R682K 0.34 tolerated(0.21) benign(0.001) TCGA-D3-A1Q6-06 5 140530281 140530281 G A PCDHB6 Missense_Mutation p.G148E 0.42 deleterious(0.01) possibly_damaging(0.785) TCGA-D3-A1Q6-06 5 140554139 140554139 C T PCDHB7 Missense_Mutation p.P575S 0.18 deleterious_low_confidence(0) benign(0) TCGA-D3-A1Q6-06 5 140580861 140580861 C T PCDHB11 Missense_Mutation p.S505F 0.14 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-D3-A1Q6-06 5 140710395 140710395 C T PCDHGA1 Silent p.I48I 0.16 TCGA-D3-A1Q6-06 5 140712150 140712150 G A PCDHGA1 Silent p.L633L 0.14 TCGA-D3-A1Q6-06 5 140870659 140870659 C T PCDHGC5 Silent p.L618L 0.29 TCGA-D3-A1Q6-06 5 145393605 145393605 C T SH3RF2 Missense_Mutation p.P347L 0.38 tolerated(0.11) benign(0.049) TCGA-D3-A1Q6-06 5 147211147 147211147 A G SPINK1 5'UTR 0.40 TCGA-D3-A1Q6-06 5 147593499 147593499 C T SPINK6 Silent p.P36P 0.24 TCGA-D3-A1Q6-06 5 150078131 150078131 C T RBM22 Silent p.K67K 0.13 TCGA-D3-A1Q6-06 5 150930261 150930261 C T FAT2 Missense_Mutation p.D1490N 0.35 possibly_damaging(0.838) TCGA-D3-A1Q6-06 5 156378783 156378783 C T TIMD4 Missense_Mutation p.R140K 0.35 tolerated(0.5) benign(0.001) TCGA-D3-A1Q6-06 5 156915476 156915476 G A ADAM19 Silent p.L783L 0.16 TCGA-D3-A1Q6-06 5 161128738 161128738 C T GABRA6 Missense_Mutation p.L441F 0.45 deleterious(0) probably_damaging(0.997) TCGA-D3-A1Q6-06 5 161569285 161569285 G A GABRG2 Nonsense_Mutation p.W335* 0.54 TCGA-D3-A1Q6-06 5 167489169 167489169 C T TENM2 Missense_Mutation p.H472Y 0.18 tolerated(1) benign(0.001) TCGA-D3-A1Q6-06 5 167891912 167891912 A C WWC1 Missense_Mutation p.Q1038P 0.19 tolerated(1) benign(0) TCGA-D3-A1Q6-06 5 167891913 167891913 G C WWC1 Missense_Mutation p.Q1038H 0.19 tolerated(0.42) benign(0.007) TCGA-D3-A1Q6-06 5 168135017 168135017 C T SLIT3 Silent p.V936V 0.11 TCGA-D3-A1Q6-06 5 168189612 168189612 C T SLIT3 Silent p.T514T 0.22 TCGA-D3-A1Q6-06 5 169435601 169435601 A G DOCK2 Missense_Mutation p.K1058R 0.14 tolerated(0.37) benign(0.085) TCGA-D3-A1Q6-06 5 175530253 175530253 G A FAM153B Missense_Mutation p.E153K 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.828) TCGA-D3-A1Q6-06 5 177161911 177161911 C T FAM153A Missense_Mutation p.E153K 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.828) TCGA-D3-A1Q6-06 5 178139264 178139264 G A ZNF354A Nonsense_Mutation p.Q539* 0.15 TCGA-D3-A1Q6-06 5 179541542 179541542 C T RASGEF1C Splice_Site p.X362_splice 0.28 TCGA-D3-A1Q6-06 5 179744010 179744010 G A GFPT2 Missense_Mutation p.S336L 0.32 deleterious(0) probably_damaging(0.91) TCGA-D3-A1Q6-06 5 180326235 180326235 C T BTNL8 5'UTR 0.31 TCGA-D3-A1Q6-06 5 19473437 19473437 C T CDH18 Silent p.T757T 0.11 TCGA-D3-A1Q6-06 5 23522894 23522894 G A PRDM9 Nonsense_Mutation p.W261* 0.15 TCGA-D3-A1Q6-06 5 35700632 35700632 G A SPEF2 Missense_Mutation p.G726S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 5 37064648 37064648 G A NIPBL Missense_Mutation p.R2690Q 0.16 deleterious_low_confidence(0.01) benign(0.061) TCGA-D3-A1Q6-06 5 38370477 38370477 G A EGFLAM Missense_Mutation p.D209N 0.33 tolerated_low_confidence(0.61) benign(0.02) TCGA-D3-A1Q6-06 5 43039764 43039764 G A ANXA2R Missense_Mutation p.P129S 0.13 tolerated(0.36) benign(0.005) TCGA-D3-A1Q6-06 5 52781804 52781804 G A FST Missense_Mutation p.E326K 0.36 tolerated(0.06) benign(0.037) TCGA-D3-A1Q6-06 5 5461977 5461977 C T KIAA0947 Missense_Mutation p.P844S 0.11 tolerated(0.1) benign(0.245) TCGA-D3-A1Q6-06 5 63894252 63894252 G A RGS7BP Silent p.L224L 0.08 TCGA-D3-A1Q6-06 5 64920110 64920110 G A TRIM23 5'UTR 0.20 TCGA-D3-A1Q6-06 5 79616023 79616023 C T SPZ1 5'UTR 0.43 TCGA-D3-A1Q6-06 5 82948429 82948429 A T HAPLN1 Nonsense_Mutation p.Y105* 0.23 TCGA-D3-A1Q6-06 5 89923146 89923146 G A GPR98 Missense_Mutation p.R264K 0.31 benign(0.364) TCGA-D3-A1Q6-06 5 94275877 94275877 G A MCTP1 Silent p.L362L 0.47 TCGA-D3-A1Q6-06 6 100957860 100957860 G A ASCC3 Nonsense_Mutation p.R2137* 0.47 TCGA-D3-A1Q6-06 6 116756873 116756873 C T DSE Silent p.F414F 0.26 TCGA-D3-A1Q6-06 6 116973221 116973221 G A ZUFSP Nonsense_Mutation p.Q366* 0.22 TCGA-D3-A1Q6-06 6 116973222 116973222 G A ZUFSP Silent p.F365F 0.22 TCGA-D3-A1Q6-06 6 117113513 117113513 G A GPRC6A Missense_Mutation p.S858F 0.20 deleterious(0.01) benign(0.056) TCGA-D3-A1Q6-06 6 117589530 117589530 T C VGLL2 Silent p.T89T 0.36 TCGA-D3-A1Q6-06 6 119327615 119327615 C T FAM184A Silent p.V604V 0.09 TCGA-D3-A1Q6-06 6 121768150 121768150 C T GJA1 Missense_Mutation p.R53C 0.16 deleterious(0) possibly_damaging(0.645) TCGA-D3-A1Q6-06 6 123039007 123039007 G A PKIB Missense_Mutation p.R30K 0.15 deleterious(0) probably_damaging(0.992) TCGA-D3-A1Q6-06 6 123039008 123039008 G A PKIB Silent p.R30R 0.14 TCGA-D3-A1Q6-06 6 127797247 127797247 G A SOGA3 Silent p.L642L 0.23 TCGA-D3-A1Q6-06 6 128388688 128388688 G A PTPRK Silent p.F711F 0.59 TCGA-D3-A1Q6-06 6 129636636 129636636 G A LAMA2 Missense_Mutation p.E1191K 0.50 tolerated(0.08) benign(0.016) TCGA-D3-A1Q6-06 6 130370510 130370510 C T L3MBTL3 Silent p.T62T 0.25 TCGA-D3-A1Q6-06 6 134350529 134350529 G A SLC2A12 Missense_Mutation p.S145F 0.27 deleterious(0) probably_damaging(0.954) TCGA-D3-A1Q6-06 6 134494411 134494411 C T SGK1 Splice_Site p.X234_splice 0.16 TCGA-D3-A1Q6-06 6 134494412 134494412 C T SGK1 Silent p.E234E 0.17 TCGA-D3-A1Q6-06 6 136589404 136589404 C T BCLAF1 Missense_Mutation p.E765K 0.20 deleterious(0.03) possibly_damaging(0.486) TCGA-D3-A1Q6-06 6 136958507 136958507 C T MAP3K5 Missense_Mutation p.G658R 0.16 tolerated(0.2) possibly_damaging(0.801) TCGA-D3-A1Q6-06 6 13977773 13977773 C T RNF182 Silent p.S141S 0.16 TCGA-D3-A1Q6-06 6 149901026 149901026 C T GINM1 Silent p.L162L 0.44 TCGA-D3-A1Q6-06 6 157521929 157521929 C T ARID1B Nonsense_Mutation p.Q1401* 0.36 TCGA-D3-A1Q6-06 6 25471398 25471398 C T LRRC16A Missense_Mutation p.S231F 0.36 deleterious(0) probably_damaging(0.984) TCGA-D3-A1Q6-06 6 25966959 25966959 G A TRIM38 Missense_Mutation p.S70N 0.45 tolerated(0.19) benign(0.079) TCGA-D3-A1Q6-06 6 2624068 2624068 G A C6orf195 5'UTR 0.13 TCGA-D3-A1Q6-06 6 29054407 29054407 G A OR2B3 Missense_Mutation p.L207F 0.40 deleterious(0) probably_damaging(0.984) TCGA-D3-A1Q6-06 6 29323094 29323094 C T OR5V1 Silent p.R293R 0.13 TCGA-D3-A1Q6-06 6 29627242 29627242 C T MOG Missense_Mutation p.L79F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A1Q6-06 6 30951695 30951695 C T MUC21 5'UTR 0.41 TCGA-D3-A1Q6-06 6 31079934 31079934 T C C6orf15 Missense_Mutation p.R68G 0.23 tolerated(0.68) possibly_damaging(0.765) TCGA-D3-A1Q6-06 6 31378860 31378860 C T MICA Missense_Mutation p.L113F 0.50 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A1Q6-06 6 31744432 31744432 G A VWA7 Missense_Mutation p.S42F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 6 32023668 32023668 C T TNXB Silent p.E2809E 0.34 TCGA-D3-A1Q6-06 6 32411081 32411081 G A HLA-DRA Missense_Mutation p.G150R 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A1Q6-06 6 32726907 32726907 C T HLA-DQB2 Silent p.V122V 0.12 TCGA-D3-A1Q6-06 6 36177996 36177996 C T BRPF3 Missense_Mutation p.P624S 0.31 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q6-06 6 36823754 36823754 G A PPIL1 Silent p.F112F 0.43 TCGA-D3-A1Q6-06 6 36922685 36922685 C T PI16 Missense_Mutation p.T50M 0.47 deleterious(0) benign(0.124) TCGA-D3-A1Q6-06 6 38825467 38825467 C T DNAH8 Silent p.F1752F 0.29 TCGA-D3-A1Q6-06 6 44144035 44144035 C T CAPN11 Missense_Mutation p.P321S 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 6 46826172 46826172 A G GPR116 Silent p.Y1156Y 0.39 TCGA-D3-A1Q6-06 6 52129332 52129332 G A MCM3 3'UTR 0.21 TCGA-D3-A1Q6-06 6 54735196 54735196 G A FAM83B Missense_Mutation p.R51Q 0.20 deleterious(0.01) benign(0.22) TCGA-D3-A1Q6-06 6 54791183 54791183 G A FAM83B Silent p.V153V 0.20 TCGA-D3-A1Q6-06 6 54805266 54805266 C T FAM83B Silent p.S499S 0.33 TCGA-D3-A1Q6-06 6 54806389 54806389 G A FAM83B Missense_Mutation p.E874K 0.32 tolerated(0.06) benign(0.093) TCGA-D3-A1Q6-06 6 55406625 55406625 G A HMGCLL1 Missense_Mutation p.P97S 0.29 tolerated(0.18) probably_damaging(1) TCGA-D3-A1Q6-06 6 70064197 70064197 C T BAI3 Missense_Mutation p.P1178S 0.26 deleterious(0.02) benign(0.038) TCGA-D3-A1Q6-06 6 70944502 70944502 G A COL9A1 Missense_Mutation p.P752S 0.18 possibly_damaging(0.674) TCGA-D3-A1Q6-06 6 70944503 70944503 G C COL9A1 Silent p.G751G 0.17 TCGA-D3-A1Q6-06 6 71571567 71571567 T A B3GAT2 Missense_Mutation p.E284V 0.36 deleterious(0.04) benign(0.131) TCGA-D3-A1Q6-06 6 76124461 76124461 G A FILIP1 Silent p.S76S 0.17 TCGA-D3-A1Q6-06 6 84233586 84233586 C T PRSS35 Silent p.F142F 0.52 TCGA-D3-A1Q6-06 6 84234295 84234295 C T PRSS35 Missense_Mutation p.H379Y 0.68 deleterious(0.01) benign(0.248) TCGA-D3-A1Q6-06 6 90660964 90660964 C G BACH2 Missense_Mutation p.E287D 0.35 tolerated(0.1) benign(0.034) TCGA-D3-A1Q6-06 7 100173606 100173606 G A LRCH4 Missense_Mutation p.P555L 0.32 deleterious(0.02) possibly_damaging(0.872) TCGA-D3-A1Q6-06 7 100701362 100701362 C T MUC17 3'UTR 0.46 TCGA-D3-A1Q6-06 7 103244906 103244906 C T RELN Nonsense_Mutation p.W1011* 0.29 TCGA-D3-A1Q6-06 7 114619726 114619726 C T MDFIC Missense_Mutation p.S237F 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 7 114619728 114619728 C T MDFIC Nonsense_Mutation p.Q238* 0.35 TCGA-D3-A1Q6-06 7 11676525 11676525 C T THSD7A Nonsense_Mutation p.W85* 0.24 TCGA-D3-A1Q6-06 7 117067557 117067557 C T ASZ1 5'UTR 0.25 TCGA-D3-A1Q6-06 7 121684490 121684490 C T PTPRZ1 Silent p.F1984F 0.29 TCGA-D3-A1Q6-06 7 122635553 122635553 C T TAS2R16 Missense_Mutation p.D46N 0.39 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A1Q6-06 7 123267276 123267276 T G ASB15 Missense_Mutation p.N270K 0.34 deleterious(0) probably_damaging(0.994) TCGA-D3-A1Q6-06 7 128119274 128119274 T C METTL2B Missense_Mutation p.F89L 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 7 128488671 128488671 G A FLNC Missense_Mutation p.G1546D 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 7 129950821 129950821 G A CPA4 Missense_Mutation p.E330K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1Q6-06 7 138341226 138341226 C T SVOPL Silent p.T167T 0.26 TCGA-D3-A1Q6-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-D3-A1Q6-06 7 141427036 141427036 G A WEE2 Intron 0.35 TCGA-D3-A1Q6-06 7 141643715 141643715 G A CLEC5A Silent p.T63T 0.16 TCGA-D3-A1Q6-06 7 141752684 141752684 C T MGAM Missense_Mutation p.S1020F 0.28 tolerated(0.06) benign(0.007) TCGA-D3-A1Q6-06 7 142021259 142021259 C T TRBV5-1 Missense_Mutation p.P80L 0.35 tolerated(0.08) benign(0.098) TCGA-D3-A1Q6-06 7 142448589 142448589 C T TRBV29-1 Silent p.I61I 0.38 TCGA-D3-A1Q6-06 7 142606687 142606687 C T TRPV5 Missense_Mutation p.E622K 0.37 tolerated(0.56) benign(0.007) TCGA-D3-A1Q6-06 7 142750017 142750017 G A OR6V1 Missense_Mutation p.E194K 0.34 deleterious(0.03) probably_damaging(0.978) TCGA-D3-A1Q6-06 7 142919780 142919780 C T TAS2R40 Silent p.F203F 0.40 TCGA-D3-A1Q6-06 7 143028681 143028681 C T CLCN1 Silent p.L368L 0.28 TCGA-D3-A1Q6-06 7 143141184 143141184 G A TAS2R60 Missense_Mutation p.M213I 0.32 tolerated(0.46) benign(0.123) TCGA-D3-A1Q6-06 7 143175670 143175670 C T TAS2R41 Silent p.S235S 0.33 TCGA-D3-A1Q6-06 7 143453382 143453382 G A CTAGE6 Missense_Mutation p.S457F 0.12 deleterious(0) benign(0.209) TCGA-D3-A1Q6-06 7 143701774 143701774 C T OR6B1 Missense_Mutation p.P229S 0.31 tolerated(0.07) probably_damaging(0.993) TCGA-D3-A1Q6-06 7 146818228 146818228 G A CNTNAP2 Silent p.E304E 0.24 TCGA-D3-A1Q6-06 7 149152758 149152758 G A ZNF777 Missense_Mutation p.S119F 0.31 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-D3-A1Q6-06 7 150037578 150037578 G A RARRES2 Missense_Mutation p.P41S 0.39 tolerated(0.3) possibly_damaging(0.728) TCGA-D3-A1Q6-06 7 150174259 150174259 C T GIMAP8 Silent p.V463V 0.38 TCGA-D3-A1Q6-06 7 150174528 150174528 G A GIMAP8 Missense_Mutation p.G553E 0.25 tolerated(0.06) possibly_damaging(0.889) TCGA-D3-A1Q6-06 7 150269327 150269327 C T GIMAP4 Missense_Mutation p.H57Y 0.31 tolerated(0.71) possibly_damaging(0.699) TCGA-D3-A1Q6-06 7 150389532 150389532 G A GIMAP2 Missense_Mutation p.G53D 0.34 tolerated(0.11) benign(0.222) TCGA-D3-A1Q6-06 7 150558186 150558186 C T AOC1 Silent p.I715I 0.33 TCGA-D3-A1Q6-06 7 150746353 150746353 C T ASIC3 Silent p.R127R 0.34 TCGA-D3-A1Q6-06 7 151168657 151168657 A G RHEB Silent p.L104L 0.28 TCGA-D3-A1Q6-06 7 151372661 151372661 G A PRKAG2 Silent p.L177L 0.26 TCGA-D3-A1Q6-06 7 154684268 154684268 C T DPP6 3'UTR 0.27 TCGA-D3-A1Q6-06 7 21510691 21510691 G A SP4 Intron 0.42 TCGA-D3-A1Q6-06 7 21856288 21856288 G A DNAH11 Missense_Mutation p.M3519I 0.43 benign(0) TCGA-D3-A1Q6-06 7 22202112 22202112 G A RAPGEF5 Missense_Mutation p.P291L 0.30 tolerated(0.17) benign(0.01) TCGA-D3-A1Q6-06 7 31016059 31016059 G A GHRHR Silent p.S330S 0.29 TCGA-D3-A1Q6-06 7 31611731 31611731 T C CCDC129 Silent p.F134F 0.53 TCGA-D3-A1Q6-06 7 34888270 34888270 C T NPSR1 Silent p.P340P 0.31 TCGA-D3-A1Q6-06 7 37780209 37780209 C T GPR141 Missense_Mutation p.R72C 0.41 deleterious(0.02) probably_damaging(1) TCGA-D3-A1Q6-06 7 38305071 38305071 C T TRGC1 Missense_Mutation p.M70I 0.33 deleterious(0.03) probably_damaging(0.951) TCGA-D3-A1Q6-06 7 4056981 4056981 G A SDK1 Missense_Mutation p.G867R 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A1Q6-06 7 41729961 41729961 C T INHBA Missense_Mutation p.E190K 0.40 tolerated(0.57) benign(0.201) TCGA-D3-A1Q6-06 7 41730026 41730026 C T INHBA Missense_Mutation p.R168K 0.34 tolerated(0.28) benign(0.348) TCGA-D3-A1Q6-06 7 45145054 45145054 G A TBRG4 Missense_Mutation p.R241C 0.25 deleterious(0) probably_damaging(0.953) TCGA-D3-A1Q6-06 7 47409130 47409130 G A TNS3 Silent p.P371P 0.28 TCGA-D3-A1Q6-06 7 47409131 47409131 G A TNS3 Missense_Mutation p.P371L 0.28 tolerated(0.11) benign(0.071) TCGA-D3-A1Q6-06 7 4794141 4794141 C T FOXK1 Silent p.Y266Y 0.27 TCGA-D3-A1Q6-06 7 50605614 50605614 C T DDC Missense_Mutation p.E127K 0.12 tolerated(0.17) benign(0.001) TCGA-D3-A1Q6-06 7 5262246 5262246 G A WIPI2 Missense_Mutation p.R228K 0.30 deleterious(0.01) possibly_damaging(0.633) TCGA-D3-A1Q6-06 7 53103569 53103569 G A POM121L12 Missense_Mutation p.G69R 0.28 tolerated(0.16) probably_damaging(0.991) TCGA-D3-A1Q6-06 7 53103759 53103759 G A POM121L12 Missense_Mutation p.R132Q 0.32 tolerated(0.42) possibly_damaging(0.776) TCGA-D3-A1Q6-06 7 56007333 56007333 C T ZNF713 Silent p.A309A 0.32 TCGA-D3-A1Q6-06 7 56149880 56149880 G A PHKG1 Missense_Mutation p.P237L 0.23 tolerated(0.08) benign(0.216) TCGA-D3-A1Q6-06 7 56149881 56149881 G A PHKG1 Missense_Mutation p.P237S 0.24 tolerated(0.17) benign(0.02) TCGA-D3-A1Q6-06 7 57187915 57187915 G A ZNF479 Missense_Mutation p.H403Y 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1Q6-06 7 62752762 62752762 G A ZNF733P RNA 0.23 TCGA-D3-A1Q6-06 7 65705952 65705952 C T TPST1 Silent p.L180L 0.40 TCGA-D3-A1Q6-06 7 720311 720311 G A PRKAR1B Missense_Mutation p.S77F 0.34 tolerated(0.14) benign(0.106) TCGA-D3-A1Q6-06 7 73800895 73800895 T C CLIP2 Silent p.L842L 0.12 TCGA-D3-A1Q6-06 7 73818340 73818340 C T CLIP2 3'UTR 0.45 TCGA-D3-A1Q6-06 7 76619605 76619605 C T UPK3B Intron 0.24 TCGA-D3-A1Q6-06 7 77558604 77558604 C T PHTF2 Missense_Mutation p.P399L 0.47 tolerated(0.1) benign(0.005) TCGA-D3-A1Q6-06 7 82582120 82582120 C T PCLO Missense_Mutation p.E2717K 0.26 unknown(0) TCGA-D3-A1Q6-06 7 82784993 82784993 C T PCLO Missense_Mutation p.E322K 0.30 unknown(0) TCGA-D3-A1Q6-06 7 86416388 86416388 G A GRM3 Missense_Mutation p.G427E 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q6-06 7 86468900 86468900 C T GRM3 Silent p.F690F 0.21 TCGA-D3-A1Q6-06 7 87021007 87021007 C T CROT Silent p.S496S 0.35 TCGA-D3-A1Q6-06 7 92731104 92731104 G A SAMD9 Missense_Mutation p.S1436F 0.28 tolerated(0.13) benign(0.04) TCGA-D3-A1Q6-06 7 92764903 92764903 C G SAMD9L Missense_Mutation p.D128H 0.39 tolerated(0.08) benign(0.012) TCGA-D3-A1Q6-06 7 94540380 94540380 G A PPP1R9A Missense_Mutation p.D319N 0.31 tolerated(0.07) benign(0.197) TCGA-D3-A1Q6-06 7 95442576 95442576 C T DYNC1I1 Missense_Mutation p.P98S 0.45 tolerated(0.16) probably_damaging(0.999) TCGA-D3-A1Q6-06 8 101084449 101084449 G A RGS22 Missense_Mutation p.R117C 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q6-06 8 101092404 101092404 G A RGS22 Silent p.A99A 0.28 TCGA-D3-A1Q6-06 8 102701519 102701519 G A NCALD 3'UTR 0.32 TCGA-D3-A1Q6-06 8 106813372 106813372 G C ZFPM2 Silent p.L354L 0.32 TCGA-D3-A1Q6-06 8 110448632 110448632 G A PKHD1L1 Missense_Mutation p.E1191K 0.45 tolerated(0.41) benign(0.005) TCGA-D3-A1Q6-06 8 110457016 110457016 C T PKHD1L1 Silent p.L1640L 0.28 TCGA-D3-A1Q6-06 8 110457046 110457046 G A PKHD1L1 Missense_Mutation p.E1650K 0.39 tolerated(0.05) possibly_damaging(0.744) TCGA-D3-A1Q6-06 8 110457371 110457371 C T PKHD1L1 Missense_Mutation p.S1758F 0.29 tolerated(0.08) benign(0.02) TCGA-D3-A1Q6-06 8 113318380 113318380 T A CSMD3 Missense_Mutation p.I2643L 0.34 deleterious(0.04) benign(0.243) TCGA-D3-A1Q6-06 8 113347699 113347699 C T CSMD3 Missense_Mutation p.G2342R 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A1Q6-06 8 11400850 11400850 G C BLK Silent p.P39P 0.26 TCGA-D3-A1Q6-06 8 11995377 11995377 G A USP17L2 Missense_Mutation p.P298L 0.07 deleterious(0.02) benign(0.073) TCGA-D3-A1Q6-06 8 130765052 130765052 C T GSDMC Missense_Mutation p.E246K 0.26 tolerated(0.9) benign(0.002) TCGA-D3-A1Q6-06 8 133141957 133141957 C T KCNQ3 Missense_Mutation p.G724E 0.36 tolerated(0.1) benign(0.037) TCGA-D3-A1Q6-06 8 133900697 133900697 C T TG Missense_Mutation p.S882F 0.36 deleterious(0) benign(0.17) TCGA-D3-A1Q6-06 8 134146996 134146996 C T TG Silent p.L2755L 0.38 TCGA-D3-A1Q6-06 8 143740339 143740339 C T JRK RNA 0.20 TCGA-D3-A1Q6-06 8 143959213 143959213 G A CYP11B1 Intron 0.30 TCGA-D3-A1Q6-06 8 145770886 145770886 G A ARHGAP39 Silent p.D756D 0.16 TCGA-D3-A1Q6-06 8 21768240 21768240 C T DOK2 Missense_Mutation p.G188R 0.42 tolerated(0.11) possibly_damaging(0.508) TCGA-D3-A1Q6-06 8 22052249 22052249 G A BMP1 Missense_Mutation p.D486N 0.28 deleterious(0.01) benign(0.209) TCGA-D3-A1Q6-06 8 22053803 22053803 C T BMP1 Intron 0.38 TCGA-D3-A1Q6-06 8 22053804 22053804 C T BMP1 Intron 0.38 TCGA-D3-A1Q6-06 8 22411977 22411977 G A SORBS3 5'UTR 0.26 TCGA-D3-A1Q6-06 8 23217632 23217632 A G LOXL2 Missense_Mutation p.F168L 0.34 tolerated(0.73) benign(0.011) TCGA-D3-A1Q6-06 8 24181473 24181473 G T ADAM28 Missense_Mutation p.V283F 0.27 deleterious(0.05) possibly_damaging(0.721) TCGA-D3-A1Q6-06 8 24775886 24775886 G A NEFM Missense_Mutation p.D840N 0.41 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-D3-A1Q6-06 8 24810312 24810312 G A CTD-2168K21.2 5'Flank 0.25 TCGA-D3-A1Q6-06 8 25708156 25708156 G A EBF2 Silent p.G550G 0.23 TCGA-D3-A1Q6-06 8 27898672 27898672 C T NUGGC Missense_Mutation p.E503K 0.22 tolerated(0.06) benign(0.17) TCGA-D3-A1Q6-06 8 2876166 2876166 G A CSMD1 Missense_Mutation p.S2621L 0.40 probably_damaging(0.996) TCGA-D3-A1Q6-06 8 28908624 28908624 C T HMBOX1 Silent p.A405A 0.25 TCGA-D3-A1Q6-06 8 2910111 2910111 G A CSMD1 Silent p.F2511F 0.33 TCGA-D3-A1Q6-06 8 3443717 3443717 G A CSMD1 Missense_Mutation p.T388I 0.41 possibly_damaging(0.571) TCGA-D3-A1Q6-06 8 3889468 3889468 C T CSMD1 Missense_Mutation p.G190E 0.45 probably_damaging(1) TCGA-D3-A1Q6-06 8 39103614 39103614 C T ADAM32 Missense_Mutation p.R611C 0.25 tolerated(0.16) possibly_damaging(0.735) TCGA-D3-A1Q6-06 8 39467040 39467040 C T ADAM18 Missense_Mutation p.P102S 0.25 deleterious(0.03) probably_damaging(0.983) TCGA-D3-A1Q6-06 8 39627009 39627009 G A ADAM2 Missense_Mutation p.H372Y 0.35 deleterious(0) benign(0.374) TCGA-D3-A1Q6-06 8 39840243 39840243 C T IDO2 Missense_Mutation p.H143Y 0.40 tolerated(0.65) probably_damaging(0.918) TCGA-D3-A1Q6-06 8 39845389 39845389 G A IDO2 Splice_Site p.X163_splice 0.33 TCGA-D3-A1Q6-06 8 39862883 39862883 G A IDO2 Silent p.R248R 0.23 TCGA-D3-A1Q6-06 8 55541018 55541018 G A RP1 Missense_Mutation p.E1526K 0.17 tolerated(0.07) benign(0.141) TCGA-D3-A1Q6-06 8 55541288 55541288 G A RP1 Missense_Mutation p.E1616K 0.32 deleterious(0) possibly_damaging(0.651) TCGA-D3-A1Q6-06 8 56270245 56270245 C T XKR4 Missense_Mutation p.H272Y 0.43 deleterious(0.01) possibly_damaging(0.699) TCGA-D3-A1Q6-06 8 62370891 62370891 A G CLVS1 Missense_Mutation p.N256S 0.28 tolerated(0.87) benign(0.046) TCGA-D3-A1Q6-06 8 65494421 65494421 C T BHLHE22 Silent p.S358S 0.32 TCGA-D3-A1Q6-06 8 68255708 68255708 G A ARFGEF1 5'UTR 0.50 TCGA-D3-A1Q6-06 8 72211462 72211462 G A EYA1 Missense_Mutation p.P216S 0.34 tolerated(0.35) benign(0.053) TCGA-D3-A1Q6-06 8 73848543 73848543 C T KCNB2 Missense_Mutation p.S318L 0.43 deleterious(0) probably_damaging(0.981) TCGA-D3-A1Q6-06 8 75227604 75227604 G A JPH1 Missense_Mutation p.L211F 0.31 tolerated(0.26) benign(0.414) TCGA-D3-A1Q6-06 8 7752252 7752252 C T DEFB4A Silent p.L6L 0.16 TCGA-D3-A1Q6-06 8 77616288 77616288 G A ZFHX4 5'UTR 0.21 TCGA-D3-A1Q6-06 8 85441753 85441753 G A RALYL Missense_Mutation p.R79Q 0.24 deleterious(0) possibly_damaging(0.776) TCGA-D3-A1Q6-06 8 87497142 87497142 C T RMDN1 Missense_Mutation p.A182T 0.34 tolerated(0.55) benign(0.003) TCGA-D3-A1Q6-06 8 89058940 89058940 C T MMP16 Silent p.G482G 0.39 TCGA-D3-A1Q6-06 8 93017364 93017364 C T RUNX1T1 Silent p.G251G 0.27 TCGA-D3-A1Q6-06 8 95384577 95384577 G A RAD54B Nonsense_Mutation p.Q852* 0.15 TCGA-D3-A1Q6-06 9 104189790 104189790 C T ALDOB Missense_Mutation p.A172T 0.27 deleterious(0) probably_damaging(0.993) TCGA-D3-A1Q6-06 9 107298641 107298641 G A OR13C3 Missense_Mutation p.R152C 0.31 deleterious(0.04) benign(0.066) TCGA-D3-A1Q6-06 9 112542745 112542745 C T PALM2-AKAP2 5'UTR 0.27 TCGA-D3-A1Q6-06 9 112963360 112963360 G A C9orf152 Silent p.F196F 0.30 TCGA-D3-A1Q6-06 9 112963727 112963727 G A C9orf152 Missense_Mutation p.S74L 0.16 deleterious(0.04) possibly_damaging(0.67) TCGA-D3-A1Q6-06 9 117810806 117810806 G A TNC Silent p.L1529L 0.22 TCGA-D3-A1Q6-06 9 119976882 119976882 G A ASTN2 Missense_Mutation p.S257F 0.34 deleterious_low_confidence(0) unknown(0) TCGA-D3-A1Q6-06 9 123216103 123216103 G A CDK5RAP2 Silent p.F808F 0.39 TCGA-D3-A1Q6-06 9 123637022 123637022 G A PHF19 5'UTR 0.30 TCGA-D3-A1Q6-06 9 124801574 124801574 G A TTLL11 Missense_Mutation p.S269F 0.31 deleterious(0) benign(0.149) TCGA-D3-A1Q6-06 9 125330664 125330664 G A OR1L8 Silent p.L31L 0.32 TCGA-D3-A1Q6-06 9 125746845 125746845 G A RABGAP1 Missense_Mutation p.G78R 0.20 tolerated(0.56) benign(0.001) TCGA-D3-A1Q6-06 9 130475045 130475045 G A C9orf117 Missense_Mutation p.E399K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1Q6-06 9 130475122 130475122 G A C9orf117 Silent p.Q424Q 0.30 TCGA-D3-A1Q6-06 9 130475123 130475123 G A C9orf117 Missense_Mutation p.E425K 0.42 tolerated(0.28) benign(0.016) TCGA-D3-A1Q6-06 9 131843440 131843440 C T DOLPP1 Silent p.P10P 0.20 TCGA-D3-A1Q6-06 9 137716449 137716449 C T COL5A1 Missense_Mutation p.P1568S 0.33 unknown(0) TCGA-D3-A1Q6-06 9 137808303 137808303 C T FCN1 Silent p.V36V 0.33 TCGA-D3-A1Q6-06 9 138656903 138656903 G A KCNT1 Missense_Mutation p.M354I 0.23 tolerated(0.08) possibly_damaging(0.472) TCGA-D3-A1Q6-06 9 139089222 139089222 G A LHX3 Silent p.F386F 0.35 TCGA-D3-A1Q6-06 9 139929414 139929414 G A C9orf139 Missense_Mutation p.E161K 0.33 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-D3-A1Q6-06 9 19372220 19372220 C G DENND4C 3'UTR 0.21 TCGA-D3-A1Q6-06 9 20990168 20990168 G A FOCAD Nonsense_Mutation p.W1684* 0.26 TCGA-D3-A1Q6-06 9 35825665 35825665 T G FAM221B Missense_Mutation p.Q165P 0.30 tolerated(0.07) benign(0.005) TCGA-D3-A1Q6-06 9 39178193 39178193 C T CNTNAP3 Missense_Mutation p.E235K 0.35 deleterious(0) possibly_damaging(0.85) TCGA-D3-A1Q6-06 9 39888156 39888156 C G SPATA31A2 Silent p.P381P 0.47 TCGA-D3-A1Q6-06 9 71628484 71628484 G A PRKACG Silent p.I175I 0.27 TCGA-D3-A1Q6-06 9 71628866 71628866 C T PRKACG Missense_Mutation p.R48K 0.22 tolerated(1) benign(0.007) TCGA-D3-A1Q6-06 9 74863328 74863328 G A GDA Intron 0.29 TCGA-D3-A1Q6-06 9 79322292 79322292 G A PRUNE2 Missense_Mutation p.S1633F 0.41 deleterious(0) probably_damaging(0.935) TCGA-D3-A1Q6-06 9 84530616 84530616 G A SPATA31D5P RNA 0.23 TCGA-D3-A1Q6-06 9 8465523 8465523 G A PTPRD Silent p.L1219L 0.50 TCGA-D3-A1Q6-06 9 96054861 96054861 C T WNK2 Missense_Mutation p.P1742L 0.47 unknown(0) TCGA-D3-A1Q6-06 X 10098133 10098133 C T WWC3 Missense_Mutation p.P857L 0.69 tolerated(0.16) benign(0.007) TCGA-D3-A1Q6-06 X 10098134 10098134 C T WWC3 Silent p.P857P 0.71 TCGA-D3-A1Q6-06 X 104464033 104464033 C T TEX13A Silent p.T281T 0.69 TCGA-D3-A1Q6-06 X 104961395 104961395 G A IL1RAPL2 Missense_Mutation p.G270R 0.74 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q6-06 X 105449869 105449869 G A MUM1L1 Silent p.R148R 0.46 TCGA-D3-A1Q6-06 X 105449870 105449870 G A MUM1L1 Missense_Mutation p.E149K 0.46 tolerated(0.37) benign(0.054) TCGA-D3-A1Q6-06 X 107422626 107422626 G A COL4A6 Missense_Mutation p.P726L 0.68 possibly_damaging(0.714) TCGA-D3-A1Q6-06 X 107938101 107938101 C T COL4A5 Missense_Mutation p.H1591Y 0.60 benign(0.013) TCGA-D3-A1Q6-06 X 125686229 125686229 G A DCAF12L1 Silent p.F121F 0.75 TCGA-D3-A1Q6-06 X 129200986 129200986 C T ELF4 Missense_Mutation p.E568K 0.65 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A1Q6-06 X 14038220 14038220 G A GEMIN8 Missense_Mutation p.T150I 0.70 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 X 1413232 1413232 C T CSF2RA Missense_Mutation p.P220S 0.23 tolerated(0.06) probably_damaging(0.985) TCGA-D3-A1Q6-06 X 150889963 150889963 C T FATE1 Missense_Mutation p.H111Y 0.72 tolerated(0.98) benign(0.193) TCGA-D3-A1Q6-06 X 151358362 151358362 G A GABRA3 Missense_Mutation p.S328F 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A1Q6-06 X 21508620 21508620 C T CNKSR2 Missense_Mutation p.S202L 0.71 deleterious(0) benign(0.253) TCGA-D3-A1Q6-06 X 23411972 23411972 G A PTCHD1 Silent p.K779K 0.53 TCGA-D3-A1Q6-06 X 26213034 26213034 C T MAGEB6 Silent p.F357F 0.61 TCGA-D3-A1Q6-06 X 3229074 3229074 G A MXRA5 Silent p.T2390T 0.69 TCGA-D3-A1Q6-06 X 35820676 35820676 G A MAGEB16 Silent p.V121V 0.48 TCGA-D3-A1Q6-06 X 35993850 35993850 C T CXorf22 Nonsense_Mutation p.Q845* 0.49 TCGA-D3-A1Q6-06 X 37028258 37028258 C T FAM47C Missense_Mutation p.S592F 0.62 deleterious(0) possibly_damaging(0.683) TCGA-D3-A1Q6-06 X 48826418 48826418 G A KCND1 Silent p.D87D 0.69 TCGA-D3-A1Q6-06 X 48887230 48887230 G A TFE3 3'UTR 0.71 TCGA-D3-A1Q6-06 X 6069432 6069432 G A NLGN4X Missense_Mutation p.L26F 0.67 tolerated(0.17) benign(0.013) TCGA-D3-A1Q6-06 X 70146807 70146807 G A SLC7A3 Silent p.T457T 0.61 TCGA-D3-A1Q6-06 X 71877458 71877458 C T PHKA1 Missense_Mutation p.G300R 0.62 deleterious(0) probably_damaging(0.996) TCGA-D3-A1Q6-06 X 75003344 75003344 T C MAGEE2 Missense_Mutation p.T515A 0.78 tolerated_low_confidence(0.1) benign(0.03) TCGA-D3-A1Q6-06 X 96212903 96212903 C T DIAPH2 Missense_Mutation p.P564L 0.55 tolerated(0.22) unknown(0) TCGA-D3-A1Q6-06 X 99551604 99551604 C T PCDH19 Missense_Mutation p.D1040N 0.60 deleterious_low_confidence(0.01) benign(0.003) TCGA-D3-A1Q6-06 X 99662087 99662087 G A PCDH19 Silent p.F503F 0.71 TCGA-D3-A1Q7-06 10 102799372 102799372 T A SFXN3 3'UTR 0.21 TCGA-D3-A1Q7-06 10 134942150 134942150 G A GPR123 Missense_Mutation p.G273E 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A1Q7-06 11 113802492 113802492 G A HTR3B Missense_Mutation p.E91K 0.21 deleterious(0.03) benign(0.198) TCGA-D3-A1Q7-06 11 17793228 17793228 C T KCNC1 Missense_Mutation p.S196F 0.15 deleterious(0) probably_damaging(0.981) TCGA-D3-A1Q7-06 11 36614827 36614827 C T RAG2 Missense_Mutation p.E298K 0.17 tolerated(0.25) benign(0.003) TCGA-D3-A1Q7-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.12 TCGA-D3-A1Q7-06 11 64764431 64764431 C T BATF2 5'UTR 0.20 TCGA-D3-A1Q7-06 11 65987258 65987258 G A PACS1 Silent p.R340R 0.11 TCGA-D3-A1Q7-06 11 82643251 82643251 C T C11orf82 Missense_Mutation p.P291S 0.26 tolerated(0.76) benign(0.012) TCGA-D3-A1Q7-06 12 109660343 109660343 C T ACACB Missense_Mutation p.S1199L 0.18 deleterious(0.03) benign(0.327) TCGA-D3-A1Q7-06 12 120794704 120794704 C T MSI1 Splice_Site p.X218_splice 0.09 TCGA-D3-A1Q7-06 12 13526307 13526307 C T C12orf36 Nonsense_Mutation p.W83* 0.18 TCGA-D3-A1Q7-06 12 28116578 28116578 G A PTHLH Missense_Mutation p.S76L 0.16 tolerated(0.13) benign(0.098) TCGA-D3-A1Q7-06 12 6705279 6705279 G A CHD4 Silent p.H639H 0.18 TCGA-D3-A1Q7-06 12 7947128 7947128 G A NANOG Missense_Mutation p.G164S 0.31 tolerated(0.73) benign(0.002) TCGA-D3-A1Q7-06 12 7947129 7947129 G A NANOG Missense_Mutation p.G164D 0.33 tolerated(0.11) benign(0.002) TCGA-D3-A1Q7-06 12 96380882 96380882 A C HAL Silent p.L338L 0.19 TCGA-D3-A1Q7-06 13 48923091 48923091 G A RB1 Splice_Site p.X180_splice 0.15 TCGA-D3-A1Q7-06 13 49033822 49033822 A C RB1 Splice_Site p.X654_splice 0.20 TCGA-D3-A1Q7-06 14 26918050 26918050 C T NOVA1 Silent p.G213G 0.11 TCGA-D3-A1Q7-06 14 65008497 65008497 C T HSPA2 Silent p.A310A 0.19 TCGA-D3-A1Q7-06 14 79111678 79111678 G A NRXN3 5'UTR 0.34 TCGA-D3-A1Q7-06 14 96730313 96730313 G A BDKRB1 Nonsense_Mutation p.W98* 0.19 TCGA-D3-A1Q7-06 15 31362263 31362263 G A TRPM1 Nonsense_Mutation p.Q101* 0.18 TCGA-D3-A1Q7-06 15 40295428 40295428 C T EIF2AK4 Silent p.P1090P 0.24 TCGA-D3-A1Q7-06 15 43895496 43895496 C T STRC Missense_Mutation p.G1497R 0.25 tolerated(0.84) benign(0.047) TCGA-D3-A1Q7-06 15 59942972 59942972 A T GTF2A2 Missense_Mutation p.S25T 0.13 tolerated(0.34) benign(0.003) TCGA-D3-A1Q7-06 15 89400694 89400694 C T ACAN Silent p.P1626P 0.18 TCGA-D3-A1Q7-06 16 2112524 2112524 C T TSC2 Silent p.S428S 0.32 TCGA-D3-A1Q7-06 16 29907123 29907123 C T SEZ6L2 Silent p.G190G 0.17 TCGA-D3-A1Q7-06 16 31072376 31072376 G A ZNF668 3'UTR 0.15 TCGA-D3-A1Q7-06 16 51174856 51174856 C T SALL1 Missense_Mutation p.R426K 0.14 tolerated(0.07) benign(0.397) TCGA-D3-A1Q7-06 16 70190455 70190455 C A PDPR Silent p.I771I 0.07 TCGA-D3-A1Q7-06 16 71668770 71668770 C T MARVELD3 Intron 0.25 TCGA-D3-A1Q7-06 16 72993635 72993635 G A ZFHX3 Missense_Mutation p.P137L 0.24 probably_damaging(0.982) TCGA-D3-A1Q7-06 16 72993636 72993636 G A ZFHX3 Missense_Mutation p.P137S 0.24 probably_damaging(0.968) TCGA-D3-A1Q7-06 16 84050128 84050128 G A SLC38A8 Silent p.F386F 0.15 TCGA-D3-A1Q7-06 16 9892225 9892225 G A GRIN2A Silent p.I755I 0.22 TCGA-D3-A1Q7-06 17 10305096 10305096 C T MYH8 Missense_Mutation p.D899N 0.19 deleterious(0.02) benign(0.06) TCGA-D3-A1Q7-06 17 7226330 7226330 G A NEURL4 Silent p.L844L 0.12 TCGA-D3-A1Q7-06 17 8053142 8053142 G A PER1 Silent p.S194S 0.17 TCGA-D3-A1Q7-06 18 28602425 28602425 C T DSC3 Silent p.P273P 0.23 TCGA-D3-A1Q7-06 18 70209153 70209153 G A CBLN2 Silent p.S81S 0.18 TCGA-D3-A1Q7-06 19 14875264 14875264 G A EMR2 Silent p.F355F 0.12 TCGA-D3-A1Q7-06 19 16860837 16860837 G A NWD1 Missense_Mutation p.V462M 0.11 deleterious(0) probably_damaging(0.982) TCGA-D3-A1Q7-06 19 55177331 55177331 C T LILRB4 Missense_Mutation p.L275F 0.21 tolerated(0.06) benign(0.01) TCGA-D3-A1Q7-06 19 55220650 55220650 C T AC098784.2 3'Flank 0.21 TCGA-D3-A1Q7-06 19 6760692 6760692 C T SH2D3A Missense_Mutation p.E126K 0.23 tolerated(0.08) benign(0.344) TCGA-D3-A1Q7-06 19 8587587 8587587 C T MYO1F Missense_Mutation p.R994Q 0.22 tolerated(0.5) benign(0.001) TCGA-D3-A1Q7-06 1 10689675 10689675 C A PEX14 Silent p.A255A 0.29 TCGA-D3-A1Q7-06 1 111690309 111690309 C T CEPT1 5'UTR 0.31 TCGA-D3-A1Q7-06 1 115829023 115829023 C T NGF Missense_Mutation p.E132K 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q7-06 1 158227512 158227512 C T CD1A 3'UTR 0.33 TCGA-D3-A1Q7-06 1 172011255 172011255 C T DNM3 Missense_Mutation p.H367Y 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A1Q7-06 1 173744862 173744862 G A KLHL20 Missense_Mutation p.D507N 0.10 tolerated(0.47) benign(0.007) TCGA-D3-A1Q7-06 1 181689360 181689360 G A CACNA1E Silent p.R590R 0.14 TCGA-D3-A1Q7-06 1 23111246 23111246 T C EPHB2 Missense_Mutation p.V163A 0.09 deleterious(0.01) possibly_damaging(0.792) TCGA-D3-A1Q7-06 1 248366863 248366863 C T OR2M3 Missense_Mutation p.S165F 0.42 deleterious(0.02) benign(0.185) TCGA-D3-A1Q7-06 1 27687213 27687213 G A MAP3K6 Silent p.I679I 0.14 TCGA-D3-A1Q7-06 1 43896716 43896716 C T SZT2 Missense_Mutation p.P1567L 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q7-06 1 43902868 43902868 C - SZT2 Frame_Shift_Del p.R1965Vfs*24 0.11 TCGA-D3-A1Q7-06 1 57341848 57341848 G A C8A Missense_Mutation p.E144K 0.22 tolerated(0.31) benign(0.019) TCGA-D3-A1Q7-06 1 94586584 94586584 C T ABCA4 Silent p.Q6Q 0.16 TCGA-D3-A1Q7-06 20 18507119 18507119 C T SEC23B Missense_Mutation p.R313C 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A1Q7-06 20 3650273 3650273 C T ADAM33 Missense_Mutation p.G751D 0.17 tolerated(0.13) benign(0.037) TCGA-D3-A1Q7-06 20 36627679 36627679 G A TTI1 Nonsense_Mutation p.Q902* 0.12 TCGA-D3-A1Q7-06 20 58381144 58381144 G A PHACTR3 Missense_Mutation p.R408K 0.17 deleterious(0.03) possibly_damaging(0.766) TCGA-D3-A1Q7-06 20 58381145 58381145 G A PHACTR3 Silent p.R408R 0.17 TCGA-D3-A1Q7-06 20 5903298 5903298 G A CHGB Missense_Mutation p.G170R 0.16 tolerated(0.22) benign(0.109) TCGA-D3-A1Q7-06 20 60902710 60902710 G A LAMA5 Missense_Mutation p.P1605S 0.23 benign(0.001) TCGA-D3-A1Q7-06 22 23063523 23063523 C T IGLV3-19 Missense_Mutation p.P77L 0.19 deleterious(0.03) probably_damaging(1) TCGA-D3-A1Q7-06 22 23956351 23956351 C T C22orf43 Missense_Mutation p.E198K 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-D3-A1Q7-06 22 32019697 32019697 G A PISD Silent p.S64S 0.19 TCGA-D3-A1Q7-06 22 45243920 45243920 C T ARHGAP8 Silent p.L368L 0.20 TCGA-D3-A1Q7-06 22 46708187 46708187 C T GTSE1 Silent p.I304I 0.15 TCGA-D3-A1Q7-06 2 204111491 204111491 C T CYP20A1 Missense_Mutation p.P46S 0.13 tolerated(0.43) benign(0.141) TCGA-D3-A1Q7-06 2 97464958 97464958 C T CNNM4 Silent p.L616L 0.18 TCGA-D3-A1Q7-06 3 122422609 122422609 C T PARP14 Silent p.S1034S 0.13 TCGA-D3-A1Q7-06 3 124538622 124538622 G A ITGB5 Silent p.I334I 0.21 TCGA-D3-A1Q7-06 3 136240075 136240075 C T STAG1 Missense_Mutation p.R219K 0.24 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A1Q7-06 3 14563253 14563253 T G GRIP2 RNA 0.12 TCGA-D3-A1Q7-06 3 49662694 49662694 C T BSN Missense_Mutation p.P171S 0.10 unknown(0) TCGA-D3-A1Q7-06 3 49693791 49693791 C T BSN Missense_Mutation p.P2268S 0.22 unknown(0) TCGA-D3-A1Q7-06 3 53275209 53275209 G A TKT Missense_Mutation p.A93V 0.13 tolerated(0.11) benign(0) TCGA-D3-A1Q7-06 4 177608419 177608419 C T VEGFC Missense_Mutation p.G356E 0.15 tolerated(0.89) benign(0.015) TCGA-D3-A1Q7-06 4 187560922 187560922 G A FAT1 Missense_Mutation p.T1199M 0.27 probably_damaging(1) TCGA-D3-A1Q7-06 4 40356375 40356375 G A CHRNA9 Silent p.R426R 0.09 TCGA-D3-A1Q7-06 4 47597789 47597789 G A CORIN Silent p.F1026F 0.15 TCGA-D3-A1Q7-06 5 101794106 101794106 C T SLCO6A1 Missense_Mutation p.D371N 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A1Q7-06 5 1034917 1034917 C T NKD2 Missense_Mutation p.S158L 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q7-06 5 112769724 112769724 C T TSSK1B Nonsense_Mutation p.W271* 0.21 TCGA-D3-A1Q7-06 5 115351463 115351463 G A AQPEP Splice_Site p.X919_splice 0.19 TCGA-D3-A1Q7-06 5 121761206 121761206 C A SNCAIP Missense_Mutation p.P388T 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A1Q7-06 5 140236087 140236087 C T PCDHA10 Missense_Mutation p.P152S 0.18 tolerated_low_confidence(0.09) possibly_damaging(0.821) TCGA-D3-A1Q7-06 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.17 TCGA-D3-A1Q7-06 5 169454944 169454944 G A DOCK2 Silent p.L1153L 0.13 TCGA-D3-A1Q7-06 6 110301378 110301378 C T GPR6 Missense_Mutation p.R355C 0.32 deleterious(0.01) benign(0.005) TCGA-D3-A1Q7-06 6 117252545 117252545 G A RFX6 Missense_Mutation p.G888E 0.34 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D3-A1Q7-06 6 127469798 127469798 C T RSPO3 Missense_Mutation p.P35S 0.34 tolerated(0.52) benign(0.007) TCGA-D3-A1Q7-06 6 25727446 25727446 C T HIST1H2BA Silent p.L104L 0.17 TCGA-D3-A1Q7-06 6 33756882 33756884 CAG T LEMD2 Frame_Shift_Del p.L4Ifs*102 0.47 TCGA-D3-A1Q7-06 6 35706273 35706273 G A ARMC12 Missense_Mutation p.R168K 0.19 tolerated(0.42) possibly_damaging(0.888) TCGA-D3-A1Q7-06 6 43013793 43013793 A T CUL7 Missense_Mutation p.S983R 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1Q7-06 6 46800998 46800998 C T MEP1A Silent p.V444V 0.30 TCGA-D3-A1Q7-06 6 46800999 46800999 C T MEP1A Missense_Mutation p.L445F 0.31 tolerated(0.05) possibly_damaging(0.654) TCGA-D3-A1Q7-06 7 1098164 1098164 C T GPR146 3'UTR 0.21 TCGA-D3-A1Q7-06 7 117175352 117175352 C T CFTR Silent p.L210L 0.19 TCGA-D3-A1Q7-06 7 138417790 138417790 C T ATP6V0A4 Missense_Mutation p.M580I 0.18 tolerated(0.64) benign(0.2) TCGA-D3-A1Q7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-D3-A1Q7-06 7 142480031 142480031 G A PRSS3P2 RNA 0.24 TCGA-D3-A1Q7-06 7 142562286 142562286 C T EPHB6 Missense_Mutation p.P243L 0.18 deleterious(0.01) possibly_damaging(0.902) TCGA-D3-A1Q7-06 7 18975448 18975448 G A HDAC9 Silent p.T940T 0.13 TCGA-D3-A1Q7-06 7 31146129 31146129 G A ADCYAP1R1 Missense_Mutation p.R441Q 0.17 deleterious(0) probably_damaging(0.97) TCGA-D3-A1Q7-06 7 82476533 82476533 G A PCLO Missense_Mutation p.P4562L 0.28 unknown(0) TCGA-D3-A1Q7-06 8 126015510 126015510 C T SQLE Silent p.I128I 0.35 TCGA-D3-A1Q7-06 8 143623501 143623501 C T BAI1 Silent p.F1302F 0.42 TCGA-D3-A1Q7-06 8 18258334 18258334 C T NAT2 Missense_Mutation p.S274F 0.34 tolerated(0.51) benign(0.05) TCGA-D3-A1Q7-06 8 38899485 38899485 G A ADAM9 Missense_Mutation p.S384N 0.29 deleterious(0.01) benign(0.038) TCGA-D3-A1Q7-06 9 107298150 107298150 C T OR13C3 Silent p.G315G 0.15 TCGA-D3-A1Q7-06 9 115593151 115593151 C T SNX30 Silent p.F202F 0.17 TCGA-D3-A1Q7-06 9 128002471 128002471 C T HSPA5 Missense_Mutation p.E158K 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A1Q7-06 9 18777808 18777808 G A ADAMTSL1 Missense_Mutation p.G1194E 0.22 tolerated(0.64) possibly_damaging(0.788) TCGA-D3-A1Q7-06 9 84231585 84231585 G A TLE1 Silent p.N247N 0.34 TCGA-D3-A1Q7-06 9 8525030 8525030 G A PTPRD Missense_Mutation p.L192F 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q7-06 X 123871004 123871004 G A TENM1 Silent p.L193L 0.15 TCGA-D3-A1Q7-06 X 135431586 135431586 G A GPR112 Missense_Mutation p.M1907I 0.14 deleterious(0.04) benign(0.058) TCGA-D3-A1Q7-06 X 151909300 151909300 C T CSAG1 3'UTR 0.19 TCGA-D3-A1Q7-06 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.21 TCGA-D3-A1Q7-06 X 153008478 153008478 G A ABCD1 Silent p.S606S 0.32 TCGA-D3-A1Q7-06 X 154020428 154020428 C T MPP1 Missense_Mutation p.E79K 0.19 tolerated(0.1) benign(0.278) TCGA-D3-A1Q7-06 X 23953461 23953461 G A CXorf58 Missense_Mutation p.R235Q 0.10 tolerated(1) benign(0.034) TCGA-D3-A1Q7-06 X 50051656 50051656 G A CCNB3 Missense_Mutation p.E163K 0.18 tolerated(0.21) benign(0.083) TCGA-D3-A1Q7-06 X 79936924 79936924 A G BRWD3 Missense_Mutation p.F1524L 0.12 tolerated_low_confidence(0.69) benign(0) TCGA-D3-A1Q8-06 10 124152792 124152792 C - PLEKHA1 Frame_Shift_Del p.L26Ffs*48 0.23 TCGA-D3-A1Q8-06 10 15714738 15714738 G A ITGA8 Silent p.I229I 0.17 TCGA-D3-A1Q8-06 10 26243817 26243817 G A MYO3A Silent p.E61E 0.35 TCGA-D3-A1Q8-06 10 31138347 31138347 T C ZNF438 Missense_Mutation p.I329M 0.46 tolerated(0.12) benign(0.321) TCGA-D3-A1Q8-06 10 37430723 37430723 G A ANKRD30A Missense_Mutation p.E244K 0.43 tolerated(0.2) possibly_damaging(0.636) TCGA-D3-A1Q8-06 10 37508264 37508264 C T ANKRD30A Silent p.D1152D 0.28 TCGA-D3-A1Q8-06 10 68686127 68686127 G A LRRTM3 5'UTR 0.30 TCGA-D3-A1Q8-06 10 75560500 75560500 G A ZSWIM8 Missense_Mutation p.G1710E 0.41 tolerated(0.31) probably_damaging(0.988) TCGA-D3-A1Q8-06 10 91099144 91099144 C T IFIT3 Silent p.L244L 0.36 TCGA-D3-A1Q8-06 10 95430554 95430554 G A FRA10AC1 Missense_Mutation p.P293L 0.19 deleterious(0) benign(0.241) TCGA-D3-A1Q8-06 10 96541683 96541683 G A CYP2C19 Missense_Mutation p.E250K 0.25 tolerated(0.08) benign(0.239) TCGA-D3-A1Q8-06 11 100141934 100141934 C T CNTN5 Missense_Mutation p.P759S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 11 117335778 117335778 C T DSCAML1 Missense_Mutation p.E1109K 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A1Q8-06 11 123993723 123993723 G A VWA5A Missense_Mutation p.D273N 0.24 tolerated(0.06) benign(0.09) TCGA-D3-A1Q8-06 11 125830842 125830842 T C CDON Missense_Mutation p.T1287A 0.18 deleterious_low_confidence(0.01) benign(0.407) TCGA-D3-A1Q8-06 11 13393916 13393916 C G ARNTL Missense_Mutation p.R342G 0.28 deleterious(0) probably_damaging(0.928) TCGA-D3-A1Q8-06 11 19246915 19246915 G A E2F8 Silent p.I758I 0.26 TCGA-D3-A1Q8-06 11 1955597 1955597 G A TNNT3 Silent p.K134K 0.24 TCGA-D3-A1Q8-06 11 48168491 48168491 G A PTPRJ Missense_Mutation p.G992D 0.19 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A1Q8-06 11 5013262 5013262 C T MMP26 Nonsense_Mutation p.Q222* 0.16 TCGA-D3-A1Q8-06 11 5528810 5528810 G A UBQLN3 3'UTR 0.29 TCGA-D3-A1Q8-06 11 55406375 55406375 C T OR4P4 Missense_Mutation p.P181L 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 11 55588011 55588011 C T OR5D18 Silent p.V302V 0.22 TCGA-D3-A1Q8-06 11 56020497 56020497 C T OR5T3 Silent p.H274H 0.19 TCGA-D3-A1Q8-06 11 5809569 5809569 G A OR52N1 Missense_Mutation p.P160S 0.14 deleterious(0) probably_damaging(0.994) TCGA-D3-A1Q8-06 11 61503210 61503210 G A DAGLA Splice_Site p.X405_splice 0.19 TCGA-D3-A1Q8-06 11 61503211 61503211 G A DAGLA Missense_Mutation p.D405N 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q8-06 11 62292211 62292211 G A AHNAK Silent p.L3226L 0.37 TCGA-D3-A1Q8-06 11 6413100 6413100 G C SMPD1 Missense_Mutation p.A269P 0.19 tolerated(0.1) benign(0.373) TCGA-D3-A1Q8-06 11 6913692 6913692 G A OR2D2 Missense_Mutation p.L14F 0.19 tolerated(0.24) benign(0.047) TCGA-D3-A1Q8-06 11 69514100 69514100 G A FGF19 Missense_Mutation p.T194I 0.37 tolerated(0.11) benign(0.086) TCGA-D3-A1Q8-06 11 77775335 77775335 G A THRSP Silent p.R136R 0.36 TCGA-D3-A1Q8-06 11 7818469 7818469 C T OR5P2 Silent p.G7G 0.14 TCGA-D3-A1Q8-06 11 7846870 7846870 G A OR5P3 Missense_Mutation p.S217F 0.28 deleterious(0.02) possibly_damaging(0.624) TCGA-D3-A1Q8-06 11 7949494 7949494 G A OR10A6 Missense_Mutation p.S239F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q8-06 12 108919970 108919970 G A SART3 Missense_Mutation p.A759V 0.24 tolerated(0.78) benign(0.268) TCGA-D3-A1Q8-06 12 11083554 11083554 G A PRH2 Missense_Mutation p.G132R 0.15 deleterious_low_confidence(0) unknown(0) TCGA-D3-A1Q8-06 12 112499075 112499075 A G NAA25 Silent p.L423L 0.33 TCGA-D3-A1Q8-06 12 112631297 112631297 C T HECTD4 Silent p.T2831T 0.21 TCGA-D3-A1Q8-06 12 113748108 113748108 G A SLC8B1 Silent p.I396I 0.28 TCGA-D3-A1Q8-06 12 124416294 124416294 G A DNAH10 Missense_Mutation p.G4225E 0.16 possibly_damaging(0.649) TCGA-D3-A1Q8-06 12 12483803 12483803 G A MANSC1 Missense_Mutation p.P152S 0.22 tolerated(0.24) benign(0.074) TCGA-D3-A1Q8-06 12 13906573 13906573 G A GRIN2B Missense_Mutation p.L230F 0.11 deleterious(0) probably_damaging(0.982) TCGA-D3-A1Q8-06 12 21457408 21457408 G A SLCO1A2 Missense_Mutation p.S181F 0.43 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q8-06 12 22609921 22609921 G A C2CD5 Missense_Mutation p.T903I 0.24 deleterious(0) possibly_damaging(0.889) TCGA-D3-A1Q8-06 12 2968800 2968800 A G FOXM1 Silent p.P470P 0.28 TCGA-D3-A1Q8-06 12 49087393 49087393 A G CCNT1 Missense_Mutation p.V535A 0.26 tolerated(0.92) benign(0) TCGA-D3-A1Q8-06 12 54799035 54799035 G A ITGA5 Silent p.T380T 0.25 TCGA-D3-A1Q8-06 12 54903641 54903641 G A NCKAP1L Missense_Mutation p.G203R 0.25 tolerated(0.22) benign(0.281) TCGA-D3-A1Q8-06 12 72027980 72027980 A G ZFC3H1 Missense_Mutation p.V822A 0.18 tolerated(0.43) benign(0.025) TCGA-D3-A1Q8-06 12 81688664 81688664 G A PPFIA2 Nonsense_Mutation p.Q959* 0.21 TCGA-D3-A1Q8-06 12 83251132 83251132 G T TMTC2 Missense_Mutation p.G143W 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1Q8-06 12 93881291 93881291 C T MRPL42 Missense_Mutation p.P80S 0.13 deleterious(0.04) benign(0.279) TCGA-D3-A1Q8-06 12 95867846 95867846 C T METAP2 5'UTR 0.33 TCGA-D3-A1Q8-06 14 101522630 101522630 C T MIR323B RNA 0.24 TCGA-D3-A1Q8-06 14 20248811 20248811 G A OR4M1 Silent p.S110S 0.13 TCGA-D3-A1Q8-06 14 20586324 20586324 C T OR4K17 Silent p.L253L 0.19 TCGA-D3-A1Q8-06 14 20612314 20612314 C T OR4N5 Silent p.A140A 0.18 TCGA-D3-A1Q8-06 14 21109703 21109703 C T OR6S1 Missense_Mutation p.V50M 0.16 deleterious(0) benign(0.276) TCGA-D3-A1Q8-06 14 24976699 24976699 C T CMA1 Silent p.G24G 0.23 TCGA-D3-A1Q8-06 14 34398386 34398386 C T EGLN3 Silent p.E170E 0.19 TCGA-D3-A1Q8-06 14 38678754 38678754 G A SSTR1 Missense_Mutation p.G54S 0.25 tolerated(0.94) benign(0.001) TCGA-D3-A1Q8-06 14 47504453 47504453 C T MDGA2 Missense_Mutation p.G527E 0.29 deleterious(0.01) probably_damaging(1) TCGA-D3-A1Q8-06 14 65239370 65239370 G A SPTB Silent p.D1827D 0.25 TCGA-D3-A1Q8-06 14 70171398 70171398 C T KIAA0247 Missense_Mutation p.L133F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q8-06 14 78140470 78140470 C G ALKBH1 Missense_Mutation p.L285F 0.34 tolerated(0.18) benign(0.261) TCGA-D3-A1Q8-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.25 TCGA-D3-A1Q8-06 14 93712562 93712562 C T BTBD7 Missense_Mutation p.G731E 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q8-06 14 93723590 93723590 A G BTBD7 Missense_Mutation p.V520A 0.24 deleterious(0) possibly_damaging(0.769) TCGA-D3-A1Q8-06 14 99640620 99640620 C T BCL11B Silent p.K851K 0.32 TCGA-D3-A1Q8-06 15 23931648 23931648 G A NDN Silent p.F239F 0.16 TCGA-D3-A1Q8-06 15 24922085 24922085 C T NPAP1 Silent p.L357L 0.23 TCGA-D3-A1Q8-06 15 29346945 29346945 C T APBA2 Silent p.L286L 0.22 TCGA-D3-A1Q8-06 15 29346946 29346946 C T APBA2 Missense_Mutation p.L287F 0.23 tolerated_low_confidence(0.07) benign(0.002) TCGA-D3-A1Q8-06 15 42171478 42171478 G A SPTBN5 Silent p.F1054F 0.26 TCGA-D3-A1Q8-06 15 45401086 45401086 G A DUOX2 Silent p.G433G 0.31 TCGA-D3-A1Q8-06 15 49327778 49327778 G A SECISBP2L Missense_Mutation p.P94L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q8-06 15 52230438 52230438 T C LEO1 Missense_Mutation p.K639R 0.25 deleterious(0.03) possibly_damaging(0.705) TCGA-D3-A1Q8-06 15 57913864 57913864 G A MYZAP Missense_Mutation p.R126K 0.24 tolerated(1) benign(0.002) TCGA-D3-A1Q8-06 15 66774131 66774131 G A MAP2K1 Missense_Mutation p.E203K 0.22 deleterious(0) probably_damaging(0.995) TCGA-D3-A1Q8-06 15 76135956 76135956 C T UBE2Q2 5'UTR 0.38 TCGA-D3-A1Q8-06 16 1261270 1261270 C T CACNA1H Silent p.I1442I 0.20 TCGA-D3-A1Q8-06 16 1292332 1292332 C T TPSAB1 3'UTR 0.37 TCGA-D3-A1Q8-06 16 20335568 20335568 G A GP2 Silent p.N35N 0.20 TCGA-D3-A1Q8-06 16 20380984 20380984 C T PDILT Missense_Mutation p.E316K 0.27 deleterious(0) possibly_damaging(0.821) TCGA-D3-A1Q8-06 16 27374945 27374945 C T IL4R Missense_Mutation p.P758S 0.33 tolerated(0.26) probably_damaging(0.979) TCGA-D3-A1Q8-06 16 3065388 3065388 G A CLDN6 Missense_Mutation p.S212F 0.21 deleterious(0.01) possibly_damaging(0.792) TCGA-D3-A1Q8-06 16 30664259 30664259 T C PRR14 Silent p.C113C 0.24 TCGA-D3-A1Q8-06 16 3274148 3274148 G A ZNF200 Missense_Mutation p.S311F 0.25 deleterious(0) probably_damaging(0.979) TCGA-D3-A1Q8-06 16 3454957 3454957 C T ZNF174 Intron 0.17 TCGA-D3-A1Q8-06 16 3828061 3828061 C T CREBBP Silent p.P688P 0.27 TCGA-D3-A1Q8-06 16 51172979 51172979 G A SALL1 Nonsense_Mutation p.Q1052* 0.27 TCGA-D3-A1Q8-06 16 58712283 58712283 G A SLC38A7 Silent p.L189L 0.29 TCGA-D3-A1Q8-06 16 81095571 81095571 C T C16orf46 Missense_Mutation p.S128N 0.28 tolerated(0.17) possibly_damaging(0.82) TCGA-D3-A1Q8-06 16 88876078 88876078 G A APRT 3'UTR 0.15 TCGA-D3-A1Q8-06 17 10399779 10399779 C T MYH1 Missense_Mutation p.E1582K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q8-06 17 10436921 10436921 G A MYH2 Missense_Mutation p.P737S 0.17 deleterious(0.04) probably_damaging(1) TCGA-D3-A1Q8-06 17 1548932 1548932 G A SCARF1 Silent p.S20S 0.24 TCGA-D3-A1Q8-06 17 18167115 18167115 C T MIEF2 Silent p.F145F 0.17 TCGA-D3-A1Q8-06 17 26824354 26824354 G A SLC13A2 3'UTR 0.30 TCGA-D3-A1Q8-06 17 36704930 36704930 C T SRCIN1 Missense_Mutation p.E1045K 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A1Q8-06 17 4576337 4576337 G A PELP1 Missense_Mutation p.P650L 0.21 possibly_damaging(0.713) TCGA-D3-A1Q8-06 17 45822322 45822322 C T TBX21 Nonsense_Mutation p.R400* 0.25 TCGA-D3-A1Q8-06 17 46607154 46607154 C T HOXB1 Missense_Mutation p.E221K 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q8-06 17 48599398 48599398 G A MYCBPAP Missense_Mutation p.G448R 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 17 48917490 48917490 G A WFIKKN2 Missense_Mutation p.D281N 0.35 deleterious(0.03) probably_damaging(1) TCGA-D3-A1Q8-06 17 62045702 62045702 G A SCN4A Silent p.I239I 0.38 TCGA-D3-A1Q8-06 17 64880639 64880639 C T CACNG5 Missense_Mutation p.S144F 0.24 deleterious(0) benign(0.297) TCGA-D3-A1Q8-06 17 72338125 72338125 G T KIF19 Missense_Mutation p.Q77H 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q8-06 17 7339603 7339603 G A TMEM102 Missense_Mutation p.G102E 0.22 tolerated(0.12) probably_damaging(1) TCGA-D3-A1Q8-06 17 7339604 7339604 G A TMEM102 Silent p.G102G 0.21 TCGA-D3-A1Q8-06 17 7535262 7535262 G A SHBG Missense_Mutation p.G261S 0.20 tolerated(0.07) probably_damaging(0.972) TCGA-D3-A1Q8-06 17 7710496 7710496 C T DNAH2 Silent p.I3157I 0.19 TCGA-D3-A1Q8-06 17 7720944 7720944 C T DNAH2 Silent p.T3362T 0.35 TCGA-D3-A1Q8-06 17 78063627 78063627 T C CCDC40 Missense_Mutation p.S926P 0.21 deleterious(0) probably_damaging(0.99) TCGA-D3-A1Q8-06 17 78867523 78867523 G A RPTOR Silent p.A753A 0.36 TCGA-D3-A1Q8-06 17 79650942 79650942 G A ARL16 5'UTR 0.26 TCGA-D3-A1Q8-06 17 80196837 80196837 G A SLC16A3 Silent p.P461P 0.25 TCGA-D3-A1Q8-06 17 80333227 80333227 C T UTS2R Missense_Mutation p.P343S 0.33 tolerated(1) benign(0.001) TCGA-D3-A1Q8-06 17 80369340 80369340 C T OGFOD3 Missense_Mutation p.R124Q 0.12 tolerated(0.7) benign(0.007) TCGA-D3-A1Q8-06 18 13884885 13884885 G A MC2R Silent p.P211P 0.22 TCGA-D3-A1Q8-06 18 28648154 28648154 C T DSC2 Missense_Mutation p.E845K 0.15 deleterious(0) benign(0.186) TCGA-D3-A1Q8-06 18 31320012 31320012 G A ASXL3 Missense_Mutation p.E882K 0.17 benign(0.345) TCGA-D3-A1Q8-06 18 31323472 31323472 C T ASXL3 Silent p.T1220T 0.27 TCGA-D3-A1Q8-06 18 31324785 31324785 G A ASXL3 Missense_Mutation p.R1658K 0.16 benign(0.214) TCGA-D3-A1Q8-06 19 13136228 13136228 C T NFIX Missense_Mutation p.P141S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A1Q8-06 19 17017764 17017764 C T CPAMD8 Missense_Mutation p.R1389Q 0.24 tolerated(1) benign(0.002) TCGA-D3-A1Q8-06 19 19114993 19114993 G T SUGP2 Silent p.L971L 0.18 TCGA-D3-A1Q8-06 19 35611987 35611987 C T FXYD3 Missense_Mutation p.P73S 0.28 tolerated(0.07) possibly_damaging(0.828) TCGA-D3-A1Q8-06 19 35801452 35801452 C T MAG Nonsense_Mutation p.R508* 0.19 TCGA-D3-A1Q8-06 19 36577616 36577616 G A WDR62 Missense_Mutation p.R557Q 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 19 36577617 36577617 G A WDR62 Silent p.R557R 0.21 TCGA-D3-A1Q8-06 19 38860873 38860873 C T CATSPERG Missense_Mutation p.P1063L 0.15 tolerated(0.18) possibly_damaging(0.851) TCGA-D3-A1Q8-06 19 39876822 39876822 C A PAF1 Nonsense_Mutation p.E469* 0.23 TCGA-D3-A1Q8-06 19 41026059 41026059 G A SPTBN4 Splice_Site p.X1218_splice 0.30 TCGA-D3-A1Q8-06 19 41916548 41916548 C T BCKDHA Missense_Mutation p.P39S 0.24 tolerated(0.68) benign(0) TCGA-D3-A1Q8-06 19 43766210 43766210 G A PSG9 Missense_Mutation p.P171S 0.26 tolerated(0.05) benign(0.26) TCGA-D3-A1Q8-06 19 44515405 44515405 C T ZNF230 Missense_Mutation p.S405L 0.24 deleterious(0.03) possibly_damaging(0.821) TCGA-D3-A1Q8-06 19 44680393 44680393 G A ZNF226 Silent p.Q326Q 0.15 TCGA-D3-A1Q8-06 19 44933324 44933324 G A ZNF229 Silent p.P544P 0.23 TCGA-D3-A1Q8-06 19 50059050 50059050 C T NOSIP Silent p.V288V 0.17 TCGA-D3-A1Q8-06 19 51960800 51960800 C T SIGLEC8 Silent p.Q216Q 0.19 TCGA-D3-A1Q8-06 19 55106174 55106174 A C LILRA1 Missense_Mutation p.I39L 0.19 deleterious(0.01) probably_damaging(0.911) TCGA-D3-A1Q8-06 19 56369884 56369884 C T NLRP4 Silent p.F375F 0.20 TCGA-D3-A1Q8-06 19 57328594 57328594 C T PEG3 Missense_Mutation p.D406N 0.21 tolerated(0.33) benign(0.006) TCGA-D3-A1Q8-06 19 6937272 6937272 C T EMR1 Silent p.A800A 0.25 TCGA-D3-A1Q8-06 19 7830709 7830709 G A CLEC4M Missense_Mutation p.E134K 0.22 tolerated(0.14) probably_damaging(0.977) TCGA-D3-A1Q8-06 1 103405961 103405961 C T COL11A1 Silent p.G1102G 0.22 TCGA-D3-A1Q8-06 1 10425692 10425692 G A KIF1B Missense_Mutation p.E1534K 0.23 tolerated(0.1) benign(0.218) TCGA-D3-A1Q8-06 1 110603566 110603566 T G ALX3 Missense_Mutation p.Y274S 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q8-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.19 deleterious(0.01) benign(0.045) TCGA-D3-A1Q8-06 1 11591711 11591711 G A PTCHD2 Missense_Mutation p.G1107R 0.20 deleterious(0) possibly_damaging(0.467) TCGA-D3-A1Q8-06 1 12336378 12336378 T G VPS13D Silent p.T911T 0.31 TCGA-D3-A1Q8-06 1 12726684 12726684 C T AADACL4 Missense_Mutation p.L388F 0.18 tolerated(1) benign(0.001) TCGA-D3-A1Q8-06 1 12835842 12835842 C T PRAMEF12 Silent p.I148I 0.23 TCGA-D3-A1Q8-06 1 12854245 12854245 G A PRAMEF1 Missense_Mutation p.E157K 0.14 tolerated(0.34) probably_damaging(0.941) TCGA-D3-A1Q8-06 1 15752487 15752487 C T EFHD2 Silent p.D143D 0.15 TCGA-D3-A1Q8-06 1 160788007 160788007 G A LY9 Splice_Site p.X448_splice 0.12 TCGA-D3-A1Q8-06 1 16381937 16381937 G A CLCNKB Silent p.Q588Q 0.33 TCGA-D3-A1Q8-06 1 169580798 169580798 A C SELP Missense_Mutation p.V360G 0.24 deleterious(0) benign(0.373) TCGA-D3-A1Q8-06 1 1696761 1696761 C T NADK Missense_Mutation p.D29N 0.18 deleterious_low_confidence(0.03) benign(0.042) TCGA-D3-A1Q8-06 1 169695858 169695858 G A SELE Missense_Mutation p.R579W 0.12 deleterious(0.04) benign(0.443) TCGA-D3-A1Q8-06 1 173567150 173567150 G A SLC9C2 Missense_Mutation p.L84F 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A1Q8-06 1 176679284 176679284 C T PAPPA2 Missense_Mutation p.S1208F 0.18 tolerated(0.64) benign(0.387) TCGA-D3-A1Q8-06 1 177001793 177001793 C A ASTN1 Missense_Mutation p.V222L 0.42 tolerated_low_confidence(1) benign(0.414) TCGA-D3-A1Q8-06 1 190129815 190129815 G A BRINP3 Silent p.I389I 0.14 TCGA-D3-A1Q8-06 1 200946489 200946489 C T KIF21B Silent p.V1392V 0.15 TCGA-D3-A1Q8-06 1 207737264 207737264 C A CR1 Missense_Mutation p.D1214E 0.11 tolerated(0.31) possibly_damaging(0.695) TCGA-D3-A1Q8-06 1 21050224 21050224 G A SH2D5 Missense_Mutation p.P268L 0.25 tolerated(0.16) benign(0.035) TCGA-D3-A1Q8-06 1 21050225 21050225 G A SH2D5 Missense_Mutation p.P268S 0.25 tolerated(0.33) possibly_damaging(0.628) TCGA-D3-A1Q8-06 1 211652335 211652335 C T RD3 3'UTR 0.50 TCGA-D3-A1Q8-06 1 215759998 215759998 G T KCTD3 Missense_Mutation p.V263F 0.20 tolerated(0.14) benign(0.19) TCGA-D3-A1Q8-06 1 228247876 228247876 C T WNT3A 3'UTR 0.49 TCGA-D3-A1Q8-06 1 230883404 230883404 C T CAPN9 Silent p.S54S 0.39 TCGA-D3-A1Q8-06 1 231402070 231402070 C T GNPAT Silent p.I324I 0.33 TCGA-D3-A1Q8-06 1 233514709 233514709 G A MLK4 Missense_Mutation p.G653R 0.43 tolerated(0.12) possibly_damaging(0.796) TCGA-D3-A1Q8-06 1 237791232 237791232 C T RYR2 Missense_Mutation p.L2098F 0.18 possibly_damaging(0.866) TCGA-D3-A1Q8-06 1 240341353 240341353 G A FMN2 Missense_Mutation p.E639K 0.12 unknown(0) TCGA-D3-A1Q8-06 1 24181003 24181003 G A FUCA1 Silent p.H272H 0.27 TCGA-D3-A1Q8-06 1 247875470 247875470 C T OR6F1 Silent p.E196E 0.45 TCGA-D3-A1Q8-06 1 248367008 248367008 C T OR2M3 Silent p.I213I 0.34 TCGA-D3-A1Q8-06 1 34090734 34090734 G A CSMD2 Missense_Mutation p.A1766V 0.22 tolerated(0.46) benign(0.013) TCGA-D3-A1Q8-06 1 36564573 36564573 C T COL8A2 Missense_Mutation p.G237S 0.32 deleterious(0.02) unknown(0) TCGA-D3-A1Q8-06 1 3673309 3673309 C T CCDC27 Missense_Mutation p.P189L 0.25 tolerated(0.16) probably_damaging(0.958) TCGA-D3-A1Q8-06 1 43739005 43739005 T C TMEM125 Silent p.S204S 0.25 TCGA-D3-A1Q8-06 1 44057176 44057176 G A PTPRF Missense_Mutation p.G495S 0.12 deleterious(0) probably_damaging(0.951) TCGA-D3-A1Q8-06 1 55465016 55465016 A C BSND Missense_Mutation p.M53L 0.26 tolerated(0.07) benign(0.012) TCGA-D3-A1Q8-06 1 68906623 68906623 C T RPE65 Missense_Mutation p.D186N 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A1Q8-06 1 75707690 75707690 T C SLC44A5 Silent p.K176K 0.29 TCGA-D3-A1Q8-06 1 92445135 92445135 G A BRDT Missense_Mutation p.E370K 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 1 9777677 9777677 G A PIK3CD Missense_Mutation p.R338Q 0.08 tolerated(0.62) benign(0.044) TCGA-D3-A1Q8-06 20 139680 139680 C T DEFB127 3'UTR 0.21 TCGA-D3-A1Q8-06 20 35690648 35690648 C G RBL1 Missense_Mutation p.E308Q 0.33 tolerated(0.16) probably_damaging(0.961) TCGA-D3-A1Q8-06 20 36642137 36642137 C G TTI1 Missense_Mutation p.E28Q 0.24 tolerated(0.21) benign(0.236) TCGA-D3-A1Q8-06 20 3682122 3682122 G A SIGLEC1 Silent p.F465F 0.30 TCGA-D3-A1Q8-06 20 40033911 40033911 G A CHD6 Silent p.I2490I 0.21 TCGA-D3-A1Q8-06 20 40979339 40979339 G A PTPRT Silent p.T598T 0.17 TCGA-D3-A1Q8-06 20 42355368 42355368 G A GTSF1L 5'UTR 0.26 TCGA-D3-A1Q8-06 20 44181907 44181907 C T WFDC8 Missense_Mutation p.G152R 0.21 deleterious(0.03) probably_damaging(0.969) TCGA-D3-A1Q8-06 20 44190781 44190781 C T WFDC8 Nonsense_Mutation p.W35* 0.21 TCGA-D3-A1Q8-06 20 62384102 62384102 G A ZBTB46 Silent p.P445P 0.34 TCGA-D3-A1Q8-06 20 9404476 9404476 C T PLCB4 Missense_Mutation p.L789F 0.26 deleterious(0.04) probably_damaging(1) TCGA-D3-A1Q8-06 22 16287314 16287314 C T POTEH Missense_Mutation p.R191K 0.14 tolerated(0.62) probably_damaging(0.997) TCGA-D3-A1Q8-06 22 30818491 30818491 G A SEC14L2 3'UTR 0.27 TCGA-D3-A1Q8-06 2 107041440 107041440 C T RGPD3 Missense_Mutation p.G995R 0.24 deleterious(0) possibly_damaging(0.84) TCGA-D3-A1Q8-06 2 119749416 119749416 G A MARCO Missense_Mutation p.G391E 0.16 deleterious(0) unknown(0) TCGA-D3-A1Q8-06 2 125405422 125405422 C T CNTNAP5 Missense_Mutation p.A654V 0.38 tolerated(0.52) benign(0.001) TCGA-D3-A1Q8-06 2 143715284 143715284 G A KYNU Silent p.E194E 0.21 TCGA-D3-A1Q8-06 2 152698602 152698602 C T CACNB4 Missense_Mutation p.E373K 0.30 deleterious(0) possibly_damaging(0.676) TCGA-D3-A1Q8-06 2 155307098 155307098 C T GALNT13 3'UTR 0.24 TCGA-D3-A1Q8-06 2 158115963 158115963 A T GALNT5 Nonsense_Mutation p.R457* 0.17 TCGA-D3-A1Q8-06 2 166892848 166892848 C T SCN1A Missense_Mutation p.E1047K 0.35 tolerated(0.18) possibly_damaging(0.507) TCGA-D3-A1Q8-06 2 167055571 167055571 G A SCN9A Missense_Mutation p.R1849C 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 2 178080485 178080485 G A HNRNPA3 Missense_Mutation p.R68K 0.25 deleterious(0.04) benign(0.136) TCGA-D3-A1Q8-06 2 179554041 179554041 C T TTN Missense_Mutation p.E10663K 0.14 TCGA-D3-A1Q8-06 2 188361801 188361801 C T TFPI Silent p.T42T 0.35 TCGA-D3-A1Q8-06 2 196729430 196729430 G A DNAH7 Nonsense_Mutation p.R2317* 0.22 TCGA-D3-A1Q8-06 2 219894256 219894256 C T CCDC108 Missense_Mutation p.E507K 0.22 tolerated(0.07) possibly_damaging(0.713) TCGA-D3-A1Q8-06 2 222308288 222308288 G A EPHA4 Missense_Mutation p.P605S 0.22 deleterious(0) possibly_damaging(0.906) TCGA-D3-A1Q8-06 2 238249666 238249666 G A COL6A3 Silent p.T2631T 0.27 TCGA-D3-A1Q8-06 2 31010211 31010211 C T CAPN13 5'UTR 0.17 TCGA-D3-A1Q8-06 2 74135895 74135895 G A ACTG2 Silent p.R117R 0.18 TCGA-D3-A1Q8-06 2 79363984 79363984 C T REG1P RNA 0.16 TCGA-D3-A1Q8-06 2 95484639 95484639 C T ANKRD20A8P RNA 0.26 TCGA-D3-A1Q8-06 2 97213176 97213176 G A ARID5A Silent p.E14E 0.27 TCGA-D3-A1Q8-06 2 97428012 97428012 G A CNNM4 Missense_Mutation p.D426N 0.26 deleterious(0) possibly_damaging(0.667) TCGA-D3-A1Q8-06 3 102196382 102196382 C T ZPLD1 Silent p.L406L 0.28 TCGA-D3-A1Q8-06 3 108819355 108819355 C T MORC1 Splice_Site p.X75_splice 0.24 TCGA-D3-A1Q8-06 3 111918179 111918179 C T SLC9C1 Missense_Mutation p.G838R 0.12 deleterious(0.02) benign(0.051) TCGA-D3-A1Q8-06 3 121707144 121707144 G A ILDR1 3'UTR 0.23 TCGA-D3-A1Q8-06 3 127786443 127786443 C T SEC61A1 Silent p.S385S 0.28 TCGA-D3-A1Q8-06 3 14552688 14552688 C T GRIP2 RNA 0.22 TCGA-D3-A1Q8-06 3 148586813 148586813 A G CPA3 Missense_Mutation p.K86E 0.15 tolerated(0.98) benign(0.001) TCGA-D3-A1Q8-06 3 155838463 155838463 G A KCNAB1 Silent p.R21R 0.26 TCGA-D3-A1Q8-06 3 38750978 38750978 C T SCN10A Silent p.Q1424Q 0.17 TCGA-D3-A1Q8-06 3 44951734 44951734 C T TGM4 Missense_Mutation p.L494F 0.28 deleterious(0.01) possibly_damaging(0.798) TCGA-D3-A1Q8-06 3 49693943 49693943 C T BSN Silent p.A2318A 0.26 TCGA-D3-A1Q8-06 3 49933251 49933251 G A MST1R Silent p.V953V 0.17 TCGA-D3-A1Q8-06 3 7728062 7728062 G A GRM7 Intron 0.18 TCGA-D3-A1Q8-06 4 122846184 122846184 C T TRPC3 Missense_Mutation p.E389K 0.30 tolerated(0.11) benign(0.078) TCGA-D3-A1Q8-06 4 123132086 123132086 C T KIAA1109 Nonsense_Mutation p.Q695* 0.20 TCGA-D3-A1Q8-06 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.54 TCGA-D3-A1Q8-06 4 56886933 56886933 G A CEP135 Missense_Mutation p.E1103K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1Q8-06 4 6051554 6051554 C T JAKMIP1 Missense_Mutation p.D652N 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q8-06 4 69533889 69533889 A G UGT2B15 Missense_Mutation p.F248L 0.23 tolerated(0.16) benign(0.004) TCGA-D3-A1Q8-06 4 9784435 9784435 C T DRD5 Missense_Mutation p.S261F 0.28 deleterious(0) possibly_damaging(0.857) TCGA-D3-A1Q8-06 5 121761093 121761093 G A SNCAIP Missense_Mutation p.G350E 0.23 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A1Q8-06 5 140724182 140724182 G A PCDHGA3 Silent p.L194L 0.35 TCGA-D3-A1Q8-06 5 140744365 140744365 C T PCDHGA5 Silent p.F156F 0.39 TCGA-D3-A1Q8-06 5 148384390 148384390 C T SH3TC2 Missense_Mutation p.D1251N 0.32 tolerated(0.66) benign(0.002) TCGA-D3-A1Q8-06 5 23527787 23527787 G A PRDM9 Missense_Mutation p.E864K 0.21 tolerated(0.08) probably_damaging(0.959) TCGA-D3-A1Q8-06 5 3599720 3599720 G A IRX1 Missense_Mutation p.D220N 0.33 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A1Q8-06 5 43656142 43656142 A C NNT Missense_Mutation p.S754R 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A1Q8-06 5 64747359 64747359 C T ADAMTS6 Missense_Mutation p.G339E 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A1Q8-06 5 90046440 90046440 G A GPR98 Missense_Mutation p.G3683R 0.34 probably_damaging(0.996) TCGA-D3-A1Q8-06 6 108687531 108687531 C A LACE1 Missense_Mutation p.P248Q 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 6 110759972 110759972 G A SLC22A16 Missense_Mutation p.S421F 0.23 tolerated(0.13) benign(0.003) TCGA-D3-A1Q8-06 6 112460492 112460492 C A LAMA4 Missense_Mutation p.D1038Y 0.24 tolerated(0.14) possibly_damaging(0.886) TCGA-D3-A1Q8-06 6 116757091 116757091 C T DSE Missense_Mutation p.S487F 0.16 deleterious(0.01) benign(0.23) TCGA-D3-A1Q8-06 6 117622149 117622149 C T ROS1 Missense_Mutation p.E2241K 0.25 tolerated(0.34) benign(0.002) TCGA-D3-A1Q8-06 6 117683825 117683825 G A ROS1 Missense_Mutation p.P1108S 0.37 tolerated(0.24) benign(0.055) TCGA-D3-A1Q8-06 6 142737023 142737023 G A GPR126 Nonsense_Mutation p.W920* 0.21 TCGA-D3-A1Q8-06 6 149730918 149730918 G A TAB2 3'UTR 0.30 TCGA-D3-A1Q8-06 6 152716712 152716712 G A SYNE1 Missense_Mutation p.P2551S 0.23 benign(0.005) TCGA-D3-A1Q8-06 6 158497657 158497657 G A SYNJ2 Splice_Site p.X765_splice 0.25 TCGA-D3-A1Q8-06 6 167570978 167570978 G A GPR31 Silent p.L114L 0.17 TCGA-D3-A1Q8-06 6 21065457 21065457 G A CDKAL1 Missense_Mutation p.V412M 0.26 tolerated(0.08) benign(0.017) TCGA-D3-A1Q8-06 6 3083487 3083487 G A RIPK1 Missense_Mutation p.D210N 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 6 31079719 31079719 G A C6orf15 Silent p.S139S 0.21 TCGA-D3-A1Q8-06 6 31735259 31735259 G A VWA7 Missense_Mutation p.P557S 0.28 tolerated(0.1) benign(0.048) TCGA-D3-A1Q8-06 6 348772 348772 C T DUSP22 Missense_Mutation p.R147W 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A1Q8-06 6 55216156 55216156 G A GFRAL Missense_Mutation p.G159E 0.29 tolerated(0.1) possibly_damaging(0.759) TCGA-D3-A1Q8-06 6 84375262 84375262 G A SNAP91 Missense_Mutation p.P57S 0.22 deleterious(0) unknown(0) TCGA-D3-A1Q8-06 7 103338459 103338459 C T RELN Nonsense_Mutation p.W328* 0.23 TCGA-D3-A1Q8-06 7 105205983 105205983 C T RINT1 Missense_Mutation p.L692F 0.11 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A1Q8-06 7 107431496 107431496 G A SLC26A3 Silent p.I189I 0.26 TCGA-D3-A1Q8-06 7 107703417 107703417 G A LAMB4 Silent p.G1028G 0.39 TCGA-D3-A1Q8-06 7 123269101 123269101 G C ASB15 Missense_Mutation p.K351N 0.25 deleterious(0) possibly_damaging(0.542) TCGA-D3-A1Q8-06 7 141414188 141414188 G A WEE2 Silent p.R174R 0.20 TCGA-D3-A1Q8-06 7 142168930 142168930 C T TRBV5-4 5'UTR 0.22 TCGA-D3-A1Q8-06 7 1482004 1482004 G A MICALL2 Missense_Mutation p.S512L 0.27 tolerated(0.34) benign(0.001) TCGA-D3-A1Q8-06 7 150883923 150883923 G A ASB10 Missense_Mutation p.R99C 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A1Q8-06 7 151135082 151135082 C T CRYGN Missense_Mutation p.M90I 0.21 tolerated(0.31) benign(0.184) TCGA-D3-A1Q8-06 7 151962163 151962163 C T KMT2C Missense_Mutation p.G382S 0.04 probably_damaging(1) TCGA-D3-A1Q8-06 7 27196286 27196286 C T HOXA7 5'UTR 0.27 TCGA-D3-A1Q8-06 7 31887622 31887622 C T PDE1C Missense_Mutation p.E374K 0.27 tolerated(0.09) probably_damaging(0.934) TCGA-D3-A1Q8-06 7 44574088 44574088 G A NPC1L1 Silent p.S708S 0.25 TCGA-D3-A1Q8-06 7 70880973 70880973 C T WBSCR17 Missense_Mutation p.R230C 0.18 deleterious(0.02) possibly_damaging(0.739) TCGA-D3-A1Q8-06 7 73483131 73483131 C T ELN 3'UTR 0.22 TCGA-D3-A1Q8-06 7 73483132 73483132 C T ELN 3'UTR 0.22 TCGA-D3-A1Q8-06 7 82451966 82451966 G A PCLO Missense_Mutation p.P4879L 0.24 unknown(0) TCGA-D3-A1Q8-06 7 88423585 88423585 C T C7orf62 Missense_Mutation p.M224I 0.18 tolerated(0.2) benign(0.151) TCGA-D3-A1Q8-06 7 89859333 89859333 G A STEAP2 Missense_Mutation p.E390K 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A1Q8-06 8 100789097 100789097 C T VPS13B Missense_Mutation p.P2473S 0.25 deleterious(0.03) possibly_damaging(0.857) TCGA-D3-A1Q8-06 8 104427556 104427556 C T DCAF13 Missense_Mutation p.S113F 0.22 deleterious_low_confidence(0) benign(0.144) TCGA-D3-A1Q8-06 8 133192441 133192441 C T KCNQ3 Nonsense_Mutation p.W247* 0.17 TCGA-D3-A1Q8-06 8 134488026 134488026 G A ST3GAL1 Missense_Mutation p.T81I 0.21 benign(0.133) TCGA-D3-A1Q8-06 8 144671343 144671343 G A EEF1D Silent p.P303P 0.22 TCGA-D3-A1Q8-06 8 144808643 144808643 G A FAM83H Silent p.P996P 0.41 TCGA-D3-A1Q8-06 8 1626557 1626557 G A DLGAP2 Silent p.R742R 0.22 TCGA-D3-A1Q8-06 8 23054697 23054697 C T TNFRSF10A Silent p.G345G 0.27 TCGA-D3-A1Q8-06 8 23117720 23117720 C T CHMP7 Missense_Mutation p.P395L 0.18 tolerated(0.35) benign(0.01) TCGA-D3-A1Q8-06 8 24167700 24167700 G A ADAM28 Silent p.T84T 0.17 TCGA-D3-A1Q8-06 8 24167701 24167701 G C ADAM28 Missense_Mutation p.E85Q 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1Q8-06 8 24350600 24350600 C T ADAM7 Missense_Mutation p.S567F 0.22 tolerated(0.37) benign(0.076) TCGA-D3-A1Q8-06 8 2886972 2886972 C T CSMD1 Missense_Mutation p.G2575E 0.22 probably_damaging(0.947) TCGA-D3-A1Q8-06 8 57354230 57354230 C T PENK Silent p.R135R 0.21 TCGA-D3-A1Q8-06 8 70667701 70667701 C T SLCO5A1 Missense_Mutation p.D406N 0.09 tolerated(0.15) benign(0.005) TCGA-D3-A1Q8-06 8 75227537 75227537 G A JPH1 Missense_Mutation p.S233L 0.16 deleterious(0.03) possibly_damaging(0.895) TCGA-D3-A1Q8-06 9 118949888 118949888 G A PAPPA Missense_Mutation p.D291N 0.36 tolerated(0.12) benign(0.145) TCGA-D3-A1Q8-06 9 119094741 119094741 G A PAPPA Missense_Mutation p.D1131N 0.33 tolerated(0.18) possibly_damaging(0.555) TCGA-D3-A1Q8-06 9 140953128 140953128 C T CACNA1B Silent p.P1472P 0.33 TCGA-D3-A1Q8-06 9 14859389 14859389 C T FREM1 Silent p.V141V 0.34 TCGA-D3-A1Q8-06 9 84603755 84603755 C G SPATA31D1 Missense_Mutation p.L8V 0.14 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-D3-A1Q8-06 X 101581512 101581512 G A NXF2 3'UTR 0.30 TCGA-D3-A1Q8-06 X 123871026 123871026 T C TENM1 Missense_Mutation p.N186S 0.38 tolerated_low_confidence(0.63) benign(0.371) TCGA-D3-A1Q8-06 X 127186130 127186130 C T ACTRT1 Missense_Mutation p.G19E 0.52 deleterious(0.02) benign(0.063) TCGA-D3-A1Q8-06 X 130678461 130678461 C T OR13H1 Silent p.G138G 0.45 TCGA-D3-A1Q8-06 X 150912780 150912780 G A CNGA2 Missense_Mutation p.G602E 0.49 tolerated(1) benign(0) TCGA-D3-A1Q8-06 X 151336636 151336636 G A GABRA3 3'UTR 0.38 TCGA-D3-A1Q8-06 X 153073991 153073991 G A PDZD4 Silent p.S40S 0.60 TCGA-D3-A1Q8-06 X 15544165 15544165 G A BMX Nonsense_Mutation p.W277* 0.24 TCGA-D3-A1Q8-06 X 3238689 3238689 G A MXRA5 Silent p.S1679S 0.52 TCGA-D3-A1Q8-06 X 38262956 38262956 C T OTC Missense_Mutation p.A209V 0.46 tolerated(0.16) possibly_damaging(0.717) TCGA-D3-A1Q8-06 Y 5605535 5605535 C T PCDH11Y Missense_Mutation p.P1192L 0.52 tolerated_low_confidence(0.14) probably_damaging(0.998) TCGA-D3-A1Q9-06 10 115980454 115980454 C T TDRD1 Silent p.T874T 0.26 TCGA-D3-A1Q9-06 11 124749391 124749391 C G ROBO3 Missense_Mutation p.T1239S 0.33 tolerated_low_confidence(0.07) benign(0.119) TCGA-D3-A1Q9-06 11 66616543 66616543 C G PC Missense_Mutation p.D1122H 0.70 deleterious(0) possibly_damaging(0.809) TCGA-D3-A1Q9-06 12 105519825 105519825 C A KIAA1033 Missense_Mutation p.S277Y 0.32 tolerated(0.25) benign(0.004) TCGA-D3-A1Q9-06 13 25077906 25077906 C A PARP4 Missense_Mutation p.M3I 0.42 tolerated(0.19) benign(0.06) TCGA-D3-A1Q9-06 15 28482110 28482110 G A HERC2 Silent p.A1334A 0.42 TCGA-D3-A1Q9-06 16 27460611 27460611 T C IL21R 3'UTR 0.20 TCGA-D3-A1Q9-06 16 31425790 31425790 T C ITGAD Missense_Mutation p.V672A 0.51 deleterious(0.04) possibly_damaging(0.794) TCGA-D3-A1Q9-06 16 50357602 50357602 C A BRD7 Nonsense_Mutation p.E447* 0.67 TCGA-D3-A1Q9-06 17 26800719 26800719 C T SLC13A2 5'UTR 0.42 TCGA-D3-A1Q9-06 17 40574746 40574746 C T PTRF Missense_Mutation p.V124M 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A1Q9-06 17 5290080 5290080 T A NUP88 Missense_Mutation p.I704F 0.39 tolerated(0.08) possibly_damaging(0.689) TCGA-D3-A1Q9-06 18 19444569 19444569 G C MIB1 Missense_Mutation p.R988P 0.11 deleterious(0.03) probably_damaging(0.966) TCGA-D3-A1Q9-06 18 31324386 31324386 C G ASXL3 Missense_Mutation p.P1525R 0.14 possibly_damaging(0.729) TCGA-D3-A1Q9-06 18 44336343 44336343 C G ST8SIA5 Missense_Mutation p.K43N 0.38 benign(0.221) TCGA-D3-A1Q9-06 19 39924009 39924009 A G RPS16 Silent p.Y115Y 0.22 TCGA-D3-A1Q9-06 19 45176143 45176143 C T CEACAM19 Missense_Mutation p.R111C 0.29 deleterious(0.03) probably_damaging(0.939) TCGA-D3-A1Q9-06 19 52327145 52327145 C A FPR3 Silent p.I48I 0.34 TCGA-D3-A1Q9-06 1 114380371 114380371 G A PTPN22 Missense_Mutation p.L551F 0.35 tolerated(0.26) benign(0.104) TCGA-D3-A1Q9-06 1 151381178 151381179 - TGGT POGZ Frame_Shift_Ins p.G685Tfs*22 0.44 TCGA-D3-A1Q9-06 1 159796625 159796631 CACTCGG - SLAMF8 5'UTR 0.28 TCGA-D3-A1Q9-06 1 160253385 160253385 G A PEX19 Missense_Mutation p.P39S 0.41 tolerated(0.33) benign(0.001) TCGA-D3-A1Q9-06 1 197115395 197115395 C A ASPM Missense_Mutation p.G58V 0.38 deleterious(0) probably_damaging(0.965) TCGA-D3-A1Q9-06 1 197115396 197115396 C A ASPM Nonsense_Mutation p.G58* 0.37 TCGA-D3-A1Q9-06 20 8665706 8665706 G A PLCB1 Silent p.S330S 0.44 TCGA-D3-A1Q9-06 2 187506113 187506113 T G ITGAV Missense_Mutation p.D319E 0.23 deleterious(0.01) benign(0.297) TCGA-D3-A1Q9-06 2 26680832 26680832 G A OTOF 3'UTR 0.32 TCGA-D3-A1Q9-06 3 3076327 3076327 C T CNTN4 Missense_Mutation p.P599S 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A1Q9-06 3 69221132 69221132 T C FRMD4B Silent p.R995R 0.52 TCGA-D3-A1Q9-06 4 187525580 187525580 G A FAT1 Missense_Mutation p.S3500L 0.08 benign(0.005) TCGA-D3-A1Q9-06 4 79366910 79366910 T C FRAS1 Intron 0.48 TCGA-D3-A1Q9-06 4 9784929 9784929 G C DRD5 Missense_Mutation p.D426H 0.13 tolerated(0.05) benign(0.117) TCGA-D3-A1Q9-06 5 179050094 179050094 T G HNRNPH1 Missense_Mutation p.K14T 0.31 deleterious(0) probably_damaging(0.987) TCGA-D3-A1Q9-06 5 35875627 35875627 G A IL7R Missense_Mutation p.V272I 0.25 tolerated(0.3) benign(0.009) TCGA-D3-A1Q9-06 5 43503827 43503827 G T C5orf34 Missense_Mutation p.S323Y 0.51 tolerated(0.19) benign(0.299) TCGA-D3-A1Q9-06 6 75950901 75950901 T C COX7A2 Silent p.K65K 0.05 TCGA-D3-A1Q9-06 7 111958309 111958309 G A ZNF277 Missense_Mutation p.E180K 0.38 tolerated(0.27) benign(0.038) TCGA-D3-A1Q9-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-D3-A1Q9-06 8 110439320 110439320 A G PKHD1L1 Missense_Mutation p.T979A 0.40 tolerated(0.15) benign(0.008) TCGA-D3-A1Q9-06 8 30703556 30703556 A G TEX15 Missense_Mutation p.L993P 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A1Q9-06 8 73849115 73849115 G A KCNB2 Missense_Mutation p.E509K 0.44 tolerated(0.1) benign(0.065) TCGA-D3-A1Q9-06 9 108120631 108120631 C G SLC44A1 Missense_Mutation p.S226C 0.38 deleterious(0.02) benign(0.093) TCGA-D3-A1Q9-06 9 14776250 14776250 A G FREM1 Intron 0.37 TCGA-D3-A1Q9-06 X 130218329 130218329 G A ARHGAP36 Silent p.A232A 0.75 TCGA-D3-A1QA-06 10 100190926 100190926 G A HPS1 Silent p.F210F 0.52 TCGA-D3-A1QA-06 10 102089862 102089862 G A PKD2L1 5'UTR 0.42 TCGA-D3-A1QA-06 10 104165191 104165191 G A PSD Silent p.F746F 0.45 TCGA-D3-A1QA-06 10 105331330 105331330 C T NEURL1 Missense_Mutation p.H134Y 0.57 tolerated(0.08) benign(0.222) TCGA-D3-A1QA-06 10 123845365 123845365 T A TACC2 Missense_Mutation p.F1117Y 0.26 possibly_damaging(0.834) TCGA-D3-A1QA-06 10 125521640 125521640 G A CPXM2 Missense_Mutation p.P509S 0.44 deleterious(0) probably_damaging(0.965) TCGA-D3-A1QA-06 10 134896165 134896165 C T GPR123-AS1 3'Flank 0.27 TCGA-D3-A1QA-06 10 16960672 16960672 G A CUBN Nonsense_Mutation p.R2317* 0.34 TCGA-D3-A1QA-06 10 27687663 27687663 G A PTCHD3 Missense_Mutation p.H622Y 0.46 deleterious(0) benign(0.043) TCGA-D3-A1QA-06 10 28420578 28420578 C T MPP7 Missense_Mutation p.D120N 0.46 tolerated(0.12) benign(0.128) TCGA-D3-A1QA-06 10 44868632 44868632 G A CXCL12 3'Flank 0.40 TCGA-D3-A1QA-06 10 46967721 46967721 C T SYT15 Missense_Mutation p.G119E 0.17 deleterious(0.05) benign(0.111) TCGA-D3-A1QA-06 10 61846624 61846624 C T ANK3 Missense_Mutation p.E1187K 0.21 probably_damaging(0.913) TCGA-D3-A1QA-06 10 67748450 67748450 C T CTNNA3 Silent p.Q755Q 0.45 TCGA-D3-A1QA-06 10 73992860 73992860 C T ANAPC16 Missense_Mutation p.P107S 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-D3-A1QA-06 10 81373830 81373830 G A SFTPA1 Silent p.R251R 0.51 TCGA-D3-A1QA-06 10 91484826 91484826 C T KIF20B Missense_Mutation p.R638C 0.52 deleterious(0) probably_damaging(0.975) TCGA-D3-A1QA-06 10 95372449 95372449 C A PDE6C 5'UTR 0.34 TCGA-D3-A1QA-06 10 96748693 96748693 C T CYP2C9 Silent p.L461L 0.54 TCGA-D3-A1QA-06 11 101375406 101375406 C T TRPC6 Silent p.E98E 0.39 TCGA-D3-A1QA-06 11 102710938 102710938 G A MMP3 Missense_Mutation p.P279L 0.39 deleterious(0.04) benign(0.003) TCGA-D3-A1QA-06 11 118365427 118365427 C T KMT2A Missense_Mutation p.P1770S 0.28 probably_damaging(0.998) TCGA-D3-A1QA-06 11 120350843 120350843 C T ARHGEF12 Missense_Mutation p.P1314L 0.42 deleterious_low_confidence(0.04) benign(0.005) TCGA-D3-A1QA-06 11 1213354 1213354 G A MUC5AC RNA 0.27 TCGA-D3-A1QA-06 11 123988943 123988943 C T VWA5A Silent p.F98F 0.35 TCGA-D3-A1QA-06 11 124189444 124189444 G C OR8D2 Missense_Mutation p.S217C 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 11 125450000 125450000 G A EI24 Silent p.V191V 0.44 TCGA-D3-A1QA-06 11 1264798 1264798 C T MUC5B Missense_Mutation p.P2230S 0.55 benign(0.091) TCGA-D3-A1QA-06 11 1268950 1268950 G A MUC5B Missense_Mutation p.G3614S 0.74 possibly_damaging(0.656) TCGA-D3-A1QA-06 11 128839225 128839225 C G ARHGAP32 Missense_Mutation p.E1947D 0.51 tolerated_low_confidence(0.96) benign(0.009) TCGA-D3-A1QA-06 11 13736088 13736088 C T FAR1 Missense_Mutation p.P330S 0.33 deleterious(0) possibly_damaging(0.87) TCGA-D3-A1QA-06 11 17414496 17414496 G A ABCC8 3'UTR 0.46 TCGA-D3-A1QA-06 11 18110953 18110953 G A SAAL1 Nonsense_Mutation p.Q232* 0.45 TCGA-D3-A1QA-06 11 18288502 18288502 C T SAA1 Missense_Mutation p.S23L 0.32 deleterious(0.04) benign(0.225) TCGA-D3-A1QA-06 11 2356547 2356547 C T CD81-AS1 Intron 0.52 TCGA-D3-A1QA-06 11 26655833 26655833 C T ANO3 Silent p.S652S 0.63 TCGA-D3-A1QA-06 11 32954769 32954769 C T QSER1 Silent p.S526S 0.45 TCGA-D3-A1QA-06 11 4703603 4703603 G A OR51E2 Silent p.I113I 0.52 TCGA-D3-A1QA-06 11 47259440 47259440 C T DDB2 Missense_Mutation p.P359L 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A1QA-06 11 50003384 50003384 G A OR4C12 Silent p.I218I 0.60 TCGA-D3-A1QA-06 11 5079910 5079910 C T OR52E2 Silent p.K316K 0.38 TCGA-D3-A1QA-06 11 5372888 5372888 C T OR51B6 Missense_Mutation p.H51Y 0.45 tolerated(0.48) benign(0.002) TCGA-D3-A1QA-06 11 55406440 55406440 T C OR4P4 Silent p.L203L 0.40 TCGA-D3-A1QA-06 11 55418847 55418847 C T OR4S2 Silent p.I156I 0.46 TCGA-D3-A1QA-06 11 57428555 57428555 C T CLP1 Nonsense_Mutation p.R309* 0.46 TCGA-D3-A1QA-06 11 60482902 60482902 G A MS4A8 3'UTR 0.46 TCGA-D3-A1QA-06 11 609395 609395 C T PHRF1 Silent p.S1312S 0.30 TCGA-D3-A1QA-06 11 609396 609396 C T PHRF1 Silent p.L1313L 0.30 TCGA-D3-A1QA-06 11 63141131 63141131 C T SLC22A9 Silent p.F174F 0.31 TCGA-D3-A1QA-06 11 6816406 6816406 G A OR6A2 Silent p.I178I 0.45 TCGA-D3-A1QA-06 11 69995855 69995855 G A ANO1 Missense_Mutation p.R433Q 0.44 deleterious(0.04) probably_damaging(0.975) TCGA-D3-A1QA-06 11 70332561 70332561 C T SHANK2 Silent p.E1280E 0.42 TCGA-D3-A1QA-06 11 78147746 78147746 G A NARS2 Silent p.F468F 0.44 TCGA-D3-A1QA-06 11 85436668 85436668 C T SYTL2 Missense_Mutation p.E278K 0.45 tolerated(0.14) benign(0.294) TCGA-D3-A1QA-06 11 92543181 92543181 C T FAT3 Silent p.V3140V 0.40 TCGA-D3-A1QA-06 12 10223798 10223798 G A CLEC1A 3'UTR 0.70 TCGA-D3-A1QA-06 12 104084292 104084292 C T STAB2 Silent p.F1091F 0.37 TCGA-D3-A1QA-06 12 106460902 106460902 C G NUAK1 Missense_Mutation p.G555A 0.41 tolerated(0.96) benign(0.038) TCGA-D3-A1QA-06 12 111321968 111321968 G A CCDC63 Missense_Mutation p.E330K 0.38 deleterious(0) probably_damaging(0.981) TCGA-D3-A1QA-06 12 112638535 112638535 G A HECTD4 Missense_Mutation p.P2679L 0.52 probably_damaging(1) TCGA-D3-A1QA-06 12 117728218 117728218 C T NOS1 Missense_Mutation p.G289E 0.49 tolerated(0.07) benign(0.03) TCGA-D3-A1QA-06 12 121880284 121880284 G A KDM2B Missense_Mutation p.P987L 0.43 tolerated_low_confidence(0.75) benign(0) TCGA-D3-A1QA-06 12 122862061 122862061 C T CLIP1 Missense_Mutation p.E178K 0.50 tolerated(0.13) probably_damaging(0.977) TCGA-D3-A1QA-06 12 123804514 123804514 G A SBNO1 Missense_Mutation p.S911F 0.43 deleterious(0.03) possibly_damaging(0.542) TCGA-D3-A1QA-06 12 124228431 124228431 C T ATP6V0A2 Nonsense_Mutation p.Q380* 0.39 TCGA-D3-A1QA-06 12 124337793 124337793 G T DNAH10 Missense_Mutation p.R1993L 0.33 possibly_damaging(0.895) TCGA-D3-A1QA-06 12 18691202 18691202 A T PIK3C2G Missense_Mutation p.I1105F 0.37 deleterious(0.03) probably_damaging(0.976) TCGA-D3-A1QA-06 12 18891833 18891833 G A CAPZA3 Missense_Mutation p.E211K 0.48 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A1QA-06 12 21721862 21721862 C T GYS2 Missense_Mutation p.V254M 0.40 deleterious(0) possibly_damaging(0.882) TCGA-D3-A1QA-06 12 21964988 21964988 G A ABCC9 Silent p.S1402S 0.34 TCGA-D3-A1QA-06 12 22046965 22046965 C T ABCC9 Splice_Site p.X601_splice 0.50 TCGA-D3-A1QA-06 12 26810792 26810792 C T ITPR2 Silent p.E680E 0.47 TCGA-D3-A1QA-06 12 2774773 2774773 C T CACNA1C Silent p.I1523I 0.47 TCGA-D3-A1QA-06 12 29596314 29596314 C T OVCH1 Missense_Mutation p.G1046E 0.57 deleterious(0.03) benign(0.225) TCGA-D3-A1QA-06 12 42860032 42860032 A G PRICKLE1 Missense_Mutation p.Y247H 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 12 49087100 49087100 G A CCNT1 Missense_Mutation p.R633C 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A1QA-06 12 50186672 50186672 C T NCKAP5L Silent p.K1146K 0.60 TCGA-D3-A1QA-06 12 5020851 5020851 C T KCNA1 Missense_Mutation p.R103W 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 12 52865493 52865493 C T KRT6C Missense_Mutation p.R260H 0.45 tolerated(0.06) benign(0.274) TCGA-D3-A1QA-06 12 53186124 53186124 G A KRT3 Missense_Mutation p.R363C 0.29 deleterious(0.01) possibly_damaging(0.478) TCGA-D3-A1QA-06 12 54912499 54912499 C A NCKAP1L Missense_Mutation p.S468Y 0.48 deleterious(0.04) possibly_damaging(0.701) TCGA-D3-A1QA-06 12 55641164 55641164 C T OR6C74 Silent p.F31F 0.39 TCGA-D3-A1QA-06 12 56221260 56221260 G A DNAJC14 Nonsense_Mutation p.Q395* 0.41 TCGA-D3-A1QA-06 12 56662922 56662922 C T COQ10A Silent p.L121L 0.46 TCGA-D3-A1QA-06 12 57579463 57579463 G A LRP1 Missense_Mutation p.E2205K 0.45 probably_damaging(0.993) TCGA-D3-A1QA-06 12 667718 667718 C T B4GALNT3 Silent p.F884F 0.56 TCGA-D3-A1QA-06 12 6709001 6709001 G A CHD4 Missense_Mutation p.H474Y 0.44 tolerated(0.25) possibly_damaging(0.728) TCGA-D3-A1QA-06 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.50 deleterious(0.02) benign(0.145) TCGA-D3-A1QA-06 12 7640601 7640601 G T CD163 Silent p.S501S 0.53 TCGA-D3-A1QA-06 12 86276090 86276090 G A NTS Silent p.R150R 0.45 TCGA-D3-A1QA-06 12 91347349 91347349 G A CCER1 Missense_Mutation p.P391S 0.47 tolerated(0.06) unknown(0) TCGA-D3-A1QA-06 12 99222980 99222980 C T ANKS1B Missense_Mutation p.R1013Q 0.47 tolerated(0.07) possibly_damaging(0.468) TCGA-D3-A1QA-06 12 99640561 99640561 G A ANKS1B Missense_Mutation p.S613F 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 13 32745229 32745229 G A FRY Nonsense_Mutation p.W658* 0.35 TCGA-D3-A1QA-06 13 35751166 35751166 C T NBEA Missense_Mutation p.P1530S 0.42 deleterious(0.05) benign(0.015) TCGA-D3-A1QA-06 13 53420893 53420893 G A PCDH8 Missense_Mutation p.A560V 0.56 tolerated(0.26) benign(0.028) TCGA-D3-A1QA-06 14 100406371 100406371 C T EML1 Silent p.V809V 0.50 TCGA-D3-A1QA-06 14 101438504 101438504 C T SNORD114-14 RNA 0.47 TCGA-D3-A1QA-06 14 102548002 102548002 G A HSP90AA1 3'UTR 0.57 TCGA-D3-A1QA-06 14 106174198 106174198 G A IGHA1 Silent p.N197N 0.39 TCGA-D3-A1QA-06 14 106307415 106307415 C T IGHD Silent p.G208G 0.35 TCGA-D3-A1QA-06 14 106610746 106610746 G A IGHV3-15 Silent p.F9F 0.43 TCGA-D3-A1QA-06 14 106668007 106668007 G A IGHV3-20 Silent p.F9F 0.40 TCGA-D3-A1QA-06 14 107211377 107211377 C T IGHV3-73 Silent p.L5L 0.45 TCGA-D3-A1QA-06 14 20344762 20344762 C T OR4K2 Silent p.I112I 0.19 TCGA-D3-A1QA-06 14 21109418 21109418 G A OR6S1 Missense_Mutation p.R145C 0.32 tolerated(0.16) possibly_damaging(0.872) TCGA-D3-A1QA-06 14 22133916 22133916 C T OR4E2 Missense_Mutation p.S207F 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 14 23393554 23393554 G A PRMT5 Missense_Mutation p.S375F 0.45 deleterious(0) probably_damaging(0.953) TCGA-D3-A1QA-06 14 24592188 24592188 C T DCAF11 Missense_Mutation p.L470F 0.38 deleterious(0.02) probably_damaging(0.918) TCGA-D3-A1QA-06 14 24901147 24901147 C T KHNYN Missense_Mutation p.P227L 0.52 tolerated(0.79) benign(0.001) TCGA-D3-A1QA-06 14 25042852 25042852 G A CTSG Silent p.T253T 0.41 TCGA-D3-A1QA-06 14 54884627 54884627 C T CDKN3 Silent p.S170S 0.58 TCGA-D3-A1QA-06 14 63179385 63179385 C T KCNH5 Intron 0.44 TCGA-D3-A1QA-06 14 63447592 63447592 C T KCNH5 Missense_Mutation p.E314K 0.36 tolerated(0.07) possibly_damaging(0.738) TCGA-D3-A1QA-06 14 63851163 63851163 G A PPP2R5E Missense_Mutation p.P401S 0.48 deleterious(0.03) benign(0.034) TCGA-D3-A1QA-06 14 64723949 64723949 C T ESR2 Silent p.L362L 0.45 TCGA-D3-A1QA-06 14 70418873 70418873 G A SMOC1 Missense_Mutation p.D40N 0.41 deleterious(0.01) possibly_damaging(0.886) TCGA-D3-A1QA-06 14 74411480 74411480 G A FAM161B Silent p.S224S 0.48 TCGA-D3-A1QA-06 14 76525678 76525678 T C IFT43 Intron 0.42 TCGA-D3-A1QA-06 14 91770235 91770235 C T CCDC88C Missense_Mutation p.E1149K 0.47 deleterious(0) possibly_damaging(0.643) TCGA-D3-A1QA-06 14 94725701 94725701 G A PPP4R4 Missense_Mutation p.E708K 0.19 deleterious(0.03) probably_damaging(0.915) TCGA-D3-A1QA-06 14 95054239 95054239 G A SERPINA5 Silent p.T180T 0.44 TCGA-D3-A1QA-06 14 95107896 95107896 C T SERPINA13P RNA 0.60 TCGA-D3-A1QA-06 14 95582790 95582790 C T DICER1 Silent p.K584K 0.43 TCGA-D3-A1QA-06 15 100331823 100331823 G A AC090825.1 5'Flank 0.33 TCGA-D3-A1QA-06 15 25924935 25924935 G A ATP10A Silent p.S1351S 0.31 TCGA-D3-A1QA-06 15 34023823 34023823 G A RYR3 Missense_Mutation p.R2451K 0.39 possibly_damaging(0.867) TCGA-D3-A1QA-06 15 40659729 40659729 G A DISP2 Missense_Mutation p.M472I 0.49 tolerated(0.91) benign(0.327) TCGA-D3-A1QA-06 15 41365680 41365680 A G INO80 Silent p.F447F 0.42 TCGA-D3-A1QA-06 15 42292362 42292362 G A PLA2G4E Silent p.Y264Y 0.40 TCGA-D3-A1QA-06 15 44120337 44120337 G A WDR76 Missense_Mutation p.V79M 0.37 tolerated_low_confidence(0.43) benign(0.021) TCGA-D3-A1QA-06 15 56958717 56958717 G A ZNF280D Missense_Mutation p.H624Y 0.42 tolerated(0.14) benign(0.027) TCGA-D3-A1QA-06 15 65890678 65890678 G A VWA9 Silent p.I186I 0.42 TCGA-D3-A1QA-06 15 67073543 67073543 C T SMAD6 Silent p.I387I 0.45 TCGA-D3-A1QA-06 15 74610969 74610969 G A CCDC33 Intron 0.42 TCGA-D3-A1QA-06 15 74636268 74636268 G A CYP11A1 Nonsense_Mutation p.Q231* 0.44 TCGA-D3-A1QA-06 15 74967365 74967365 G A EDC3 Missense_Mutation p.T34I 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QA-06 15 75012980 75012980 G T CYP1A1 Silent p.A463A 0.55 TCGA-D3-A1QA-06 15 76225175 76225175 C T FBXO22 Missense_Mutation p.P315L 0.41 deleterious(0) probably_damaging(0.986) TCGA-D3-A1QA-06 15 83544130 83544130 C T HOMER2 Silent p.P63P 0.34 TCGA-D3-A1QA-06 15 86807930 86807930 G A AGBL1 Missense_Mutation p.D464N 0.42 tolerated(0.1) benign(0.027) TCGA-D3-A1QA-06 15 89430515 89430515 G A HAPLN3 Silent p.L5L 0.35 TCGA-D3-A1QA-06 15 93595718 93595718 G A RGMA Silent p.I58I 0.44 TCGA-D3-A1QA-06 16 10971230 10971230 G A CIITA Missense_Mutation p.E15K 0.27 tolerated(0.46) benign(0.039) TCGA-D3-A1QA-06 16 1499018 1499018 G A CLCN7 Silent p.P582P 0.44 TCGA-D3-A1QA-06 16 15111005 15111006 TA - PDXDC1 Frame_Shift_Del p.Y281Cfs*12 0.20 TCGA-D3-A1QA-06 16 18806848 18806848 G A ARL6IP1 Nonsense_Mutation p.R116* 0.41 TCGA-D3-A1QA-06 16 19083402 19083402 C T COQ7 Missense_Mutation p.R76W 0.44 deleterious(0) possibly_damaging(0.892) TCGA-D3-A1QA-06 16 20335499 20335499 G A GP2 Silent p.V58V 0.50 TCGA-D3-A1QA-06 16 20996810 20996810 C T DNAH3 Silent p.R2418R 0.44 TCGA-D3-A1QA-06 16 24135269 24135269 C T PRKCB Silent p.F344F 0.47 TCGA-D3-A1QA-06 16 29842365 29842365 C T MVP Missense_Mutation p.P98S 0.47 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QA-06 16 3023069 3023069 G A PKMYT1 Intron 0.64 TCGA-D3-A1QA-06 16 3293453 3293453 C T MEFV Silent p.G678G 0.37 TCGA-D3-A1QA-06 16 48234320 48234320 G A ABCC11 Missense_Mutation p.S650F 0.35 deleterious(0) probably_damaging(0.987) TCGA-D3-A1QA-06 16 50763758 50763758 G A NOD2 Missense_Mutation p.G999E 0.40 deleterious(0.02) probably_damaging(1) TCGA-D3-A1QA-06 16 53487496 53487496 C G RBL2 Missense_Mutation p.P300R 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A1QA-06 16 61687766 61687766 G A CDH8 Missense_Mutation p.P716S 0.33 tolerated(0.19) probably_damaging(0.999) TCGA-D3-A1QA-06 16 70871611 70871611 C T HYDIN Silent p.G4408G 0.40 TCGA-D3-A1QA-06 16 70871612 70871612 C T HYDIN Missense_Mutation p.G4408E 0.40 probably_damaging(0.988) TCGA-D3-A1QA-06 16 71411602 71411602 C T CALB2 Silent p.F98F 0.38 TCGA-D3-A1QA-06 16 84270359 84270359 C T KCNG4 Missense_Mutation p.D245N 0.54 deleterious(0.02) benign(0.387) TCGA-D3-A1QA-06 16 9857353 9857353 C T GRIN2A Missense_Mutation p.D1350N 0.37 tolerated(0.41) benign(0.152) TCGA-D3-A1QA-06 17 10399767 10399767 C T MYH1 Missense_Mutation p.E1586K 0.81 deleterious(0) probably_damaging(0.916) TCGA-D3-A1QA-06 17 10415777 10415777 C T MYH1 Missense_Mutation p.M365I 0.87 deleterious(0.02) benign(0.072) TCGA-D3-A1QA-06 17 26919504 26919504 G A SPAG5 Missense_Mutation p.A253V 0.35 tolerated_low_confidence(0.18) benign(0.031) TCGA-D3-A1QA-06 17 3101329 3101329 G A OR1A2 Missense_Mutation p.E173K 0.90 tolerated(0.76) benign(0.068) TCGA-D3-A1QA-06 17 35992205 35992205 G A DDX52 Silent p.L181L 0.64 TCGA-D3-A1QA-06 17 38645016 38645016 C A TNS4 Silent p.L215L 0.31 TCGA-D3-A1QA-06 17 39092540 39092540 T G KRT23 Missense_Mutation p.K106Q 0.60 tolerated(0.17) benign(0.026) TCGA-D3-A1QA-06 17 39743019 39743019 C T KRT14 Missense_Mutation p.G23D 0.70 deleterious(0.01) unknown(0) TCGA-D3-A1QA-06 17 4389851 4389851 G A SPNS3 Missense_Mutation p.E475K 0.70 tolerated(0.12) benign(0.001) TCGA-D3-A1QA-06 17 48614080 48614080 G A EPN3 Missense_Mutation p.E55K 0.64 deleterious(0.01) probably_damaging(1) TCGA-D3-A1QA-06 17 56619994 56619994 G A C17orf47 Silent p.F518F 0.32 TCGA-D3-A1QA-06 17 61561305 61561305 G A ACE Missense_Mutation p.R561Q 0.47 tolerated(1) benign(0.003) TCGA-D3-A1QA-06 17 61987461 61987461 C T CSHL1 Intron 0.26 TCGA-D3-A1QA-06 17 67144931 67144931 G A ABCA10 3'UTR 0.67 TCGA-D3-A1QA-06 17 72340934 72340934 G A KIF19 Missense_Mutation p.R206K 0.31 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QA-06 17 72367905 72367905 C T GPR142 Silent p.A185A 0.32 TCGA-D3-A1QA-06 17 76120117 76120117 G A TMC6 Silent p.S345S 0.24 TCGA-D3-A1QA-06 17 7612849 7612849 G A EFNB3 Silent p.Q326Q 0.92 TCGA-D3-A1QA-06 17 7697672 7697672 C T DNAH2 Missense_Mutation p.P2557L 0.70 probably_damaging(1) TCGA-D3-A1QA-06 17 76993169 76993169 G A CANT1 Missense_Mutation p.S179F 0.58 deleterious(0) probably_damaging(0.981) TCGA-D3-A1QA-06 17 77769030 77769030 G A CBX8 Missense_Mutation p.P192S 0.29 tolerated(0.07) possibly_damaging(0.641) TCGA-D3-A1QA-06 17 79891022 79891022 G A PYCR1 3'UTR 0.92 TCGA-D3-A1QA-06 17 9632019 9632019 C G USP43 Silent p.G1028G 1.00 TCGA-D3-A1QA-06 18 12706651 12706651 C T PSMG2 Missense_Mutation p.P54S 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A1QA-06 18 21481141 21481141 G A LAMA3 Missense_Mutation p.G2019R 0.26 possibly_damaging(0.698) TCGA-D3-A1QA-06 18 28986203 28986203 C T DSG4 Silent p.A600A 0.32 TCGA-D3-A1QA-06 18 31803074 31803074 C T NOL4 Silent p.T48T 0.61 TCGA-D3-A1QA-06 18 43224013 43224013 G A SLC14A2 Silent p.T413T 0.34 TCGA-D3-A1QA-06 18 43534931 43534931 G A EPG5 Missense_Mutation p.S146L 0.32 tolerated_low_confidence(0.76) benign(0) TCGA-D3-A1QA-06 18 44559699 44559699 G A TCEB3B Missense_Mutation p.S646F 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QA-06 18 45555814 45555814 G A ZBTB7C Silent p.F559F 0.46 TCGA-D3-A1QA-06 18 48252484 48252484 G A MAPK4 Missense_Mutation p.D336N 0.38 tolerated(0.05) probably_damaging(0.99) TCGA-D3-A1QA-06 18 63511244 63511244 G A CDH7 Missense_Mutation p.G393E 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 18 63511245 63511245 G A CDH7 Silent p.G393G 0.29 TCGA-D3-A1QA-06 18 70526078 70526078 C T NETO1 Missense_Mutation p.R151Q 0.68 tolerated(0.42) benign(0.008) TCGA-D3-A1QA-06 19 10107314 10107314 G A COL5A3 Missense_Mutation p.P439S 0.36 unknown(0) TCGA-D3-A1QA-06 19 1051465 1051465 C T ABCA7 Silent p.L948L 0.38 TCGA-D3-A1QA-06 19 10568589 10568589 G A PDE4A Silent p.T304T 0.40 TCGA-D3-A1QA-06 19 15990223 15990223 G A CYP4F2 Missense_Mutation p.R444C 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A1QA-06 19 16590041 16590041 C T CALR3 Missense_Mutation p.M352I 0.42 tolerated(0.29) benign(0) TCGA-D3-A1QA-06 19 17000638 17000638 G A F2RL3 Missense_Mutation p.D122N 0.88 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 19 17531349 17531349 C T MVB12A Silent p.N64N 0.48 TCGA-D3-A1QA-06 19 18255891 18255891 C T MAST3 Missense_Mutation p.S935L 0.39 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QA-06 19 18499261 18499261 C A GDF15 Missense_Mutation p.A148E 0.10 tolerated(0.84) benign(0.005) TCGA-D3-A1QA-06 19 20215170 20215170 C T ZNF90 Silent p.F42F 0.38 TCGA-D3-A1QA-06 19 3600597 3600597 G A TBXA2R Silent p.F12F 0.38 TCGA-D3-A1QA-06 19 39100288 39100288 G A MAP4K1 Silent p.I318I 0.23 TCGA-D3-A1QA-06 19 41083312 41083312 G A SHKBP1 Missense_Mutation p.G51R 0.43 deleterious(0) probably_damaging(0.983) TCGA-D3-A1QA-06 19 41083314 41083314 A G SHKBP1 Silent p.G51G 0.43 TCGA-D3-A1QA-06 19 41518266 41518266 G A CYP2B6 Missense_Mutation p.R343Q 0.44 deleterious(0.01) possibly_damaging(0.619) TCGA-D3-A1QA-06 19 43268142 43268142 G A PSG8 Missense_Mutation p.S119F 0.44 tolerated(0.39) benign(0.226) TCGA-D3-A1QA-06 19 45541062 45541062 G A RELB 3'UTR 0.50 TCGA-D3-A1QA-06 19 46825115 46825115 C T HIF3A Silent p.F409F 0.40 TCGA-D3-A1QA-06 19 46832463 46832463 G A HIF3A Splice_Site p.X481_splice 0.42 TCGA-D3-A1QA-06 19 51361716 51361716 C T KLK3 Silent p.F165F 0.50 TCGA-D3-A1QA-06 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.35 tolerated(0.19) benign(0.004) TCGA-D3-A1QA-06 19 52217350 52217350 G A HAS1 Missense_Mutation p.T356I 0.59 deleterious(0) probably_damaging(0.982) TCGA-D3-A1QA-06 19 53304430 53304430 G A ZNF28 Missense_Mutation p.S223F 0.43 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A1QA-06 19 54647468 54647468 C T CNOT3 Missense_Mutation p.R81C 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 19 54966176 54966176 C T LENG8 Silent p.P242P 0.33 TCGA-D3-A1QA-06 19 55401261 55401261 G A FCAR 3'UTR 0.44 TCGA-D3-A1QA-06 19 55492998 55492998 G A NLRP2 Silent p.T137T 0.44 TCGA-D3-A1QA-06 19 59028416 59028416 C G ZBTB45 Missense_Mutation p.E209Q 0.41 tolerated(0.22) benign(0.084) TCGA-D3-A1QA-06 19 7569281 7569281 G A C19orf45 Missense_Mutation p.D256N 0.43 tolerated(0.28) benign(0.04) TCGA-D3-A1QA-06 19 9065925 9065925 G A MUC16 Missense_Mutation p.A7174V 0.45 unknown(0) TCGA-D3-A1QA-06 19 9075775 9075775 C T MUC16 Missense_Mutation p.E3891K 0.50 unknown(0) TCGA-D3-A1QA-06 19 9090826 9090826 G A MUC16 Missense_Mutation p.S330F 0.38 unknown(0) TCGA-D3-A1QA-06 19 9577475 9577475 G A ZNF560 Silent p.D716D 0.38 TCGA-D3-A1QA-06 1 104297431 104297431 G A AMY1C Missense_Mutation p.G366R 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A1QA-06 1 109385790 109385790 C T AKNAD1 Missense_Mutation p.E449K 0.57 tolerated(0.35) benign(0.041) TCGA-D3-A1QA-06 1 11008296 11008296 G A C1orf127 Silent p.L632L 0.35 TCGA-D3-A1QA-06 1 112524287 112524287 G A KCND3 Silent p.I354I 0.47 TCGA-D3-A1QA-06 1 11589855 11589855 C T PTCHD2 Missense_Mutation p.R981C 0.49 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-D3-A1QA-06 1 117311214 117311214 C T CD2 Missense_Mutation p.R289C 0.42 deleterious(0.04) benign(0.105) TCGA-D3-A1QA-06 1 120510169 120510169 C T NOTCH2 Missense_Mutation p.G447D 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 1 12884979 12884979 C T PRAMEF11 Missense_Mutation p.E378K 0.46 deleterious(0) possibly_damaging(0.731) TCGA-D3-A1QA-06 1 12939556 12939556 G A PRAMEF4 Missense_Mutation p.P416S 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A1QA-06 1 12954607 12954607 G A PRAMEF10 Missense_Mutation p.P226S 0.33 tolerated(0.12) benign(0.396) TCGA-D3-A1QA-06 1 13036519 13036519 C T PRAMEF22 Silent p.F197F 0.23 TCGA-D3-A1QA-06 1 13669060 13669060 G A PRAMEF14 Missense_Mutation p.R424C 0.50 tolerated(0.19) benign(0.443) TCGA-D3-A1QA-06 1 145416872 145416872 C T HFE2 Missense_Mutation p.S406F 0.42 deleterious(0.05) benign(0.328) TCGA-D3-A1QA-06 1 153004998 153004998 C T SPRR1B Silent p.P59P 0.39 TCGA-D3-A1QA-06 1 153303186 153303186 G A PGLYRP4 3'UTR 0.35 TCGA-D3-A1QA-06 1 153346251 153346251 G A S100A12 3'UTR 0.38 TCGA-D3-A1QA-06 1 153391753 153391753 G A S100A7A Missense_Mutation p.G92R 0.37 deleterious(0.05) possibly_damaging(0.882) TCGA-D3-A1QA-06 1 154557721 154557721 G A ADAR Silent p.L1139L 0.46 TCGA-D3-A1QA-06 1 158576414 158576414 C T OR10Z1 Silent p.F62F 0.36 TCGA-D3-A1QA-06 1 158618345 158618345 C T SPTA1 Missense_Mutation p.R1223Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 1 158654952 158654952 C T SPTA1 Missense_Mutation p.M70I 0.57 tolerated(0.38) benign(0.011) TCGA-D3-A1QA-06 1 16583245 16583245 G A FBXO42 Missense_Mutation p.P171L 0.47 deleterious(0) benign(0.229) TCGA-D3-A1QA-06 1 169660933 169660933 G A SELL Missense_Mutation p.P384S 0.45 deleterious_low_confidence(0.01) benign(0.355) TCGA-D3-A1QA-06 1 169698386 169698386 G A SELE Missense_Mutation p.P344L 0.27 deleterious(0.04) benign(0.072) TCGA-D3-A1QA-06 1 173628572 173628572 C T ANKRD45 Intron 0.62 TCGA-D3-A1QA-06 1 176564229 176564229 C A PAPPA2 Missense_Mutation p.P497T 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A1QA-06 1 176659394 176659394 C T PAPPA2 Silent p.S753S 0.46 TCGA-D3-A1QA-06 1 176734898 176734898 C T PAPPA2 Silent p.L1416L 0.49 TCGA-D3-A1QA-06 1 180240798 180240798 G A LHX4 Intron 0.33 TCGA-D3-A1QA-06 1 181724450 181724450 C T CACNA1E Silent p.I1302I 0.39 TCGA-D3-A1QA-06 1 181732607 181732607 G A CACNA1E Silent p.K1585K 0.48 TCGA-D3-A1QA-06 1 181754859 181754859 C T CACNA1E Missense_Mutation p.P1897L 0.45 tolerated(0.1) possibly_damaging(0.713) TCGA-D3-A1QA-06 1 196643044 196643044 G A CFH Missense_Mutation p.G101E 0.52 tolerated(0.08) possibly_damaging(0.895) TCGA-D3-A1QA-06 1 196857243 196857243 G A CFHR4 5'UTR 0.36 TCGA-D3-A1QA-06 1 196857321 196857321 C T CFHR4 Missense_Mutation p.S14F 0.39 deleterious(0.01) benign(0.051) TCGA-D3-A1QA-06 1 196952032 196952032 C T CFHR5 Missense_Mutation p.P26S 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A1QA-06 1 197396720 197396720 G A CRB1 Silent p.L755L 0.43 TCGA-D3-A1QA-06 1 201063042 201063042 C T CACNA1S Nonsense_Mutation p.W122* 0.43 TCGA-D3-A1QA-06 1 202097202 202097202 A C GPR37L1 Missense_Mutation p.I322L 0.55 tolerated(0.57) benign(0.01) TCGA-D3-A1QA-06 1 203140242 203140242 C T MYBPH Missense_Mutation p.G294S 0.32 deleterious(0) probably_damaging(0.984) TCGA-D3-A1QA-06 1 207087397 207087397 C T FAIM3 Missense_Mutation p.G27E 0.47 deleterious(0) probably_damaging(0.979) TCGA-D3-A1QA-06 1 209796360 209796360 G A LAMB3 Silent p.G841G 0.45 TCGA-D3-A1QA-06 1 210856840 210856840 G A KCNH1 Missense_Mutation p.P918L 0.64 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D3-A1QA-06 1 213224700 213224700 C T RPS6KC1 5'UTR 0.60 TCGA-D3-A1QA-06 1 222717494 222717494 T C HHIPL2 Missense_Mutation p.E120G 0.46 deleterious(0) probably_damaging(0.993) TCGA-D3-A1QA-06 1 233802610 233802610 G A KCNK1 Missense_Mutation p.D209N 0.41 tolerated(0.44) benign(0.023) TCGA-D3-A1QA-06 1 24447457 24447457 G A IL22RA1 Silent p.S521S 0.36 TCGA-D3-A1QA-06 1 247040330 247040330 G A AHCTF1 Silent p.F962F 0.53 TCGA-D3-A1QA-06 1 247978618 247978618 G A OR14A16 Silent p.T138T 0.39 TCGA-D3-A1QA-06 1 248084415 248084415 C T OR2T8 Silent p.I32I 0.35 TCGA-D3-A1QA-06 1 248737333 248737333 G A OR2T34 Silent p.A242A 0.30 TCGA-D3-A1QA-06 1 29189617 29189617 A G OPRD1 Missense_Mutation p.N314S 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 1 29319972 29319972 C T EPB41 Missense_Mutation p.S200F 0.47 tolerated(0.05) possibly_damaging(0.571) TCGA-D3-A1QA-06 1 29319973 29319973 C T EPB41 Silent p.S200S 0.47 TCGA-D3-A1QA-06 1 31655411 31655411 G T NKAIN1 Nonsense_Mutation p.Y166* 0.53 TCGA-D3-A1QA-06 1 34087804 34087804 G A CSMD2 Silent p.I1890I 0.38 TCGA-D3-A1QA-06 1 34662999 34662999 C T C1orf94 Missense_Mutation p.P165L 0.45 tolerated_low_confidence(0.21) benign(0.014) TCGA-D3-A1QA-06 1 39916822 39916822 C T MACF1 Missense_Mutation p.A4727V 0.51 probably_damaging(0.979) TCGA-D3-A1QA-06 1 42896258 42896258 G A ZMYND12 3'UTR 0.33 TCGA-D3-A1QA-06 1 43119503 43119503 G A CCDC30 Missense_Mutation p.G719D 0.54 tolerated(0.08) benign(0.174) TCGA-D3-A1QA-06 1 43880784 43880784 C T SZT2 Missense_Mutation p.S177F 0.38 deleterious(0.03) benign(0.001) TCGA-D3-A1QA-06 1 44423214 44423214 C T IPO13 Silent p.F511F 0.52 TCGA-D3-A1QA-06 1 47059829 47059829 G A MKNK1 5'UTR 0.35 TCGA-D3-A1QA-06 1 47366002 47366002 C T CYP4Z2P RNA 0.26 TCGA-D3-A1QA-06 1 54610221 54610221 G A CDCP2 Silent p.T115T 0.49 TCGA-D3-A1QA-06 1 57537964 57537964 C T DAB1 Missense_Mutation p.A144T 0.45 deleterious(0) benign(0.127) TCGA-D3-A1QA-06 1 63005462 63005462 G A DOCK7 Silent p.V1018V 0.45 TCGA-D3-A1QA-06 1 63024887 63024887 G A DOCK7 Missense_Mutation p.P735L 0.59 tolerated(0.1) benign(0.054) TCGA-D3-A1QA-06 1 65858517 65858517 C T DNAJC6 Silent p.T624T 0.45 TCGA-D3-A1QA-06 1 75038009 75038009 C T C1orf173 Missense_Mutation p.E1129K 0.38 tolerated(0.4) benign(0.308) TCGA-D3-A1QA-06 1 75086490 75086490 C T C1orf173 Missense_Mutation p.E310K 0.41 deleterious(0) probably_damaging(0.994) TCGA-D3-A1QA-06 1 85331580 85331580 G A LPAR3 Missense_Mutation p.A75V 0.43 deleterious(0) probably_damaging(0.936) TCGA-D3-A1QA-06 1 877579 877579 C T SAMD11 Silent p.P311P 0.25 TCGA-D3-A1QA-06 1 89420882 89420882 T C CCBL2 Missense_Mutation p.T272A 0.46 deleterious(0) benign(0.229) TCGA-D3-A1QA-06 1 91843681 91843681 C T HFM1 Missense_Mutation p.M432I 0.55 deleterious(0.03) probably_damaging(0.966) TCGA-D3-A1QA-06 20 31760844 31760844 C T BPIFA2 Silent p.V88V 0.40 TCGA-D3-A1QA-06 20 33364129 33364129 G A NCOA6 Missense_Mutation p.R120W 0.26 possibly_damaging(0.839) TCGA-D3-A1QA-06 20 33842501 33842501 G A MMP24 Missense_Mutation p.G254E 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 20 40944419 40944419 G A PTPRT Missense_Mutation p.L695F 0.49 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A1QA-06 20 41306677 41306677 G A PTPRT Missense_Mutation p.R328C 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A1QA-06 20 44751836 44751836 G A CD40 Missense_Mutation p.E159K 0.42 deleterious(0.02) probably_damaging(0.949) TCGA-D3-A1QA-06 20 45012104 45012104 A G ELMO2 Missense_Mutation p.I236T 0.43 deleterious(0) possibly_damaging(0.491) TCGA-D3-A1QA-06 20 45353822 45353822 C T SLC2A10 Silent p.F49F 0.35 TCGA-D3-A1QA-06 20 46265098 46265098 C T NCOA3 Silent p.P656P 0.42 TCGA-D3-A1QA-06 20 49576218 49576218 C T MOCS3 Missense_Mutation p.A280V 0.54 deleterious(0.01) possibly_damaging(0.517) TCGA-D3-A1QA-06 20 55027325 55027325 G A CASS4 Missense_Mutation p.E365K 0.41 deleterious(0.05) benign(0.082) TCGA-D3-A1QA-06 20 56195414 56195414 C T ZBP1 5'UTR 0.44 TCGA-D3-A1QA-06 20 58587852 58587852 C T CDH26 3'UTR 0.57 TCGA-D3-A1QA-06 20 61340675 61340675 C T NTSR1 Missense_Mutation p.S39L 0.45 tolerated(0.05) benign(0.015) TCGA-D3-A1QA-06 21 41385160 41385160 G A DSCAM Missense_Mutation p.P1947L 0.41 deleterious_low_confidence(0) benign(0.154) TCGA-D3-A1QA-06 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.41 tolerated(0.11) probably_damaging(0.993) TCGA-D3-A1QA-06 21 44108041 44108041 C T PDE9A Missense_Mutation p.S52F 0.43 tolerated(0.06) possibly_damaging(0.825) TCGA-D3-A1QA-06 21 45799003 45799003 C T TRPM2 Nonsense_Mutation p.Q380* 0.45 TCGA-D3-A1QA-06 22 19223300 19223300 G A CLTCL1 Silent p.N296N 0.43 TCGA-D3-A1QA-06 22 24658478 24658478 C T POM121L9P RNA 0.24 TCGA-D3-A1QA-06 22 26422418 26422418 G A MYO18B Missense_Mutation p.E2160K 0.46 tolerated(0.61) benign(0.006) TCGA-D3-A1QA-06 22 26423017 26423017 G A MYO18B Silent p.P2359P 0.31 TCGA-D3-A1QA-06 22 26866780 26866780 C T HPS4 Splice_Site p.X168_splice 0.37 TCGA-D3-A1QA-06 22 36700073 36700073 G A MYH9 Silent p.F786F 0.42 TCGA-D3-A1QA-06 22 37326699 37326699 C T CSF2RB Intron 0.25 TCGA-D3-A1QA-06 22 39772070 39772070 C T SYNGR1 Silent p.F117F 0.53 TCGA-D3-A1QA-06 22 39824104 39824104 C T TAB1 Missense_Mutation p.S408F 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A1QA-06 22 43926756 43926756 C T EFCAB6 Missense_Mutation p.R1441H 0.43 deleterious(0.02) probably_damaging(1) TCGA-D3-A1QA-06 22 45309868 45309868 G A PHF21B Missense_Mutation p.P222L 0.40 tolerated(0.63) benign(0.005) TCGA-D3-A1QA-06 22 46760441 46760441 A G CELSR1 Missense_Mutation p.L2916P 0.20 tolerated(0.22) benign(0) TCGA-D3-A1QA-06 22 46835151 46835151 G A CELSR1 Silent p.F1447F 0.42 TCGA-D3-A1QA-06 22 50750472 50750472 G A DENND6B 3'UTR 0.25 TCGA-D3-A1QA-06 2 100199260 100199260 C T AFF3 Silent p.T956T 0.41 TCGA-D3-A1QA-06 2 103136335 103136335 G A SLC9A4 Missense_Mutation p.G580E 0.42 tolerated(0.92) benign(0.002) TCGA-D3-A1QA-06 2 107007371 107007371 C T PLGLA RNA 0.50 TCGA-D3-A1QA-06 2 107041150 107041150 C A RGPD3 Missense_Mutation p.E1091D 0.46 tolerated(0.15) benign(0.005) TCGA-D3-A1QA-06 2 113780194 113780194 C T IL36B 3'UTR 0.47 TCGA-D3-A1QA-06 2 121106908 121106908 A T INHBB Missense_Mutation p.T228S 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A1QA-06 2 122165191 122165191 G A CLASP1 Missense_Mutation p.S842F 0.51 deleterious(0) possibly_damaging(0.905) TCGA-D3-A1QA-06 2 128345966 128345966 G A MYO7B Splice_Site p.X564_splice 0.32 TCGA-D3-A1QA-06 2 133541240 133541240 G A NCKAP5 Silent p.T1048T 0.42 TCGA-D3-A1QA-06 2 136479545 136479545 C T R3HDM1 Missense_Mutation p.A943V 0.40 tolerated(0.1) benign(0.027) TCGA-D3-A1QA-06 2 141777598 141777598 C T LRP1B Silent p.R621R 0.46 TCGA-D3-A1QA-06 2 158290911 158290911 C T CYTIP Missense_Mutation p.D84N 0.55 deleterious(0.01) benign(0.086) TCGA-D3-A1QA-06 2 160242964 160242964 C T BAZ2B Missense_Mutation p.G1124E 0.42 probably_damaging(1) TCGA-D3-A1QA-06 2 161052834 161052834 G A ITGB6 Missense_Mutation p.S80F 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 2 163039979 163039979 C T FAP Splice_Site p.X605_splice 0.46 TCGA-D3-A1QA-06 2 167133802 167133802 C T SCN9A Silent p.L844L 0.29 TCGA-D3-A1QA-06 2 167297980 167297980 C T SCN7A Missense_Mutation p.D695N 0.44 deleterious(0) probably_damaging(0.974) TCGA-D3-A1QA-06 2 171260857 171260857 C T MYO3B Missense_Mutation p.A793V 0.35 deleterious(0.04) benign(0.213) TCGA-D3-A1QA-06 2 176983919 176983919 A G HOXD10 Missense_Mutation p.N328S 0.32 tolerated(0.07) probably_damaging(0.956) TCGA-D3-A1QA-06 2 179582773 179582773 G A TTN Silent p.S8320S 0.28 TCGA-D3-A1QA-06 2 179742823 179742823 G A CCDC141 Silent p.I589I 0.41 TCGA-D3-A1QA-06 2 187694550 187694550 C T ZSWIM2 Silent p.K333K 0.43 TCGA-D3-A1QA-06 2 1893184 1893184 C T MYT1L Silent p.R781R 0.43 TCGA-D3-A1QA-06 2 192701226 192701226 G A SDPR Missense_Mutation p.S234F 0.48 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QA-06 2 210559009 210559009 G A MAP2 Silent p.P705P 0.48 TCGA-D3-A1QA-06 2 215919365 215919365 T C ABCA12 Missense_Mutation p.N114S 0.71 tolerated(0.33) benign(0.002) TCGA-D3-A1QA-06 2 220250763 220250763 G A DNPEP Missense_Mutation p.R173C 0.30 deleterious(0) benign(0.231) TCGA-D3-A1QA-06 2 220502344 220502344 G A SLC4A3 Silent p.E886E 0.32 TCGA-D3-A1QA-06 2 224856569 224856569 C T SERPINE2 Silent p.G224G 0.27 TCGA-D3-A1QA-06 2 228128547 228128547 G A COL4A3 Missense_Mutation p.G401E 0.33 probably_damaging(1) TCGA-D3-A1QA-06 2 229890519 229890519 C T PID1 Silent p.Q192Q 0.42 TCGA-D3-A1QA-06 2 242681921 242681921 C T D2HGDH Missense_Mutation p.P141L 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 2 30976031 30976031 G A CAPN13 Silent p.I325I 0.26 TCGA-D3-A1QA-06 2 33174001 33174001 G A LTBP1 Missense_Mutation p.R185K 0.48 deleterious(0.01) possibly_damaging(0.87) TCGA-D3-A1QA-06 2 58358966 58358966 G A VRK2 Missense_Mutation p.E234K 0.34 deleterious(0.03) probably_damaging(0.984) TCGA-D3-A1QA-06 2 6991691 6991691 G A CMPK2 Silent p.I372I 0.37 TCGA-D3-A1QA-06 2 70890787 70890787 C T ADD2 Missense_Mutation p.G651R 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1QA-06 2 73493768 73493768 C T FBXO41 Silent p.A316A 0.38 TCGA-D3-A1QA-06 2 89326736 89326736 G A IGKV3-11 Missense_Mutation p.L93F 0.45 tolerated(0.1) benign(0.435) TCGA-D3-A1QA-06 2 90108540 90108540 C T IGKV6D-41 Missense_Mutation p.P4L 0.44 tolerated(0.18) benign(0.343) TCGA-D3-A1QA-06 2 98779420 98779420 C T VWA3B Silent p.D365D 0.40 TCGA-D3-A1QA-06 2 98928668 98928668 C T VWA3B Silent p.A1247A 0.53 TCGA-D3-A1QA-06 3 108183485 108183485 C T MYH15 Silent p.V597V 0.38 TCGA-D3-A1QA-06 3 108682299 108682299 G A MORC1 Missense_Mutation p.R921C 0.41 deleterious(0.02) benign(0.063) TCGA-D3-A1QA-06 3 108705742 108705742 G A MORC1 Missense_Mutation p.P748S 0.46 tolerated(1) benign(0.01) TCGA-D3-A1QA-06 3 111602917 111602917 G A PHLDB2 5'UTR 0.35 TCGA-D3-A1QA-06 3 112647760 112647760 C A CD200R1 Missense_Mutation p.K224N 0.48 deleterious(0.04) possibly_damaging(0.796) TCGA-D3-A1QA-06 3 119306800 119306800 C T ADPRH 3'UTR 0.55 TCGA-D3-A1QA-06 3 119336952 119336952 C T PLA1A Missense_Mutation p.P281S 0.43 deleterious(0.03) probably_damaging(1) TCGA-D3-A1QA-06 3 123366165 123366165 C T MYLK Missense_Mutation p.E1509K 0.27 deleterious(0) possibly_damaging(0.56) TCGA-D3-A1QA-06 3 123376127 123376127 C T MYLK Nonsense_Mutation p.W1378* 0.49 TCGA-D3-A1QA-06 3 123946845 123946845 C T KALRN Missense_Mutation p.R26W 0.42 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-D3-A1QA-06 3 124103703 124103703 C T KALRN Silent p.T592T 0.36 TCGA-D3-A1QA-06 3 126708282 126708282 C T PLXNA1 Silent p.I282I 0.36 TCGA-D3-A1QA-06 3 130673915 130673917 AGC - ATP2C1 In_Frame_Del p.A284del 0.31 TCGA-D3-A1QA-06 3 133098855 133098855 C A TMEM108 Silent p.I100I 0.46 TCGA-D3-A1QA-06 3 134197421 134197421 G A ANAPC13 3'UTR 0.47 TCGA-D3-A1QA-06 3 135721893 135721893 C T PPP2R3A Missense_Mutation p.S518F 0.37 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-D3-A1QA-06 3 14861656 14861656 G A FGD5 Missense_Mutation p.E360K 0.42 tolerated(0.09) benign(0.001) TCGA-D3-A1QA-06 3 149042780 149042780 G A TM4SF18 Silent p.L99L 0.30 TCGA-D3-A1QA-06 3 150403561 150403561 C T FAM194A Missense_Mutation p.E251K 0.45 tolerated(0.72) benign(0.004) TCGA-D3-A1QA-06 3 150908650 150908650 C T MED12L Missense_Mutation p.R634W 0.28 deleterious(0) possibly_damaging(0.803) TCGA-D3-A1QA-06 3 151046191 151046191 C T P2RY13 Nonsense_Mutation p.W218* 0.38 TCGA-D3-A1QA-06 3 151545698 151545698 G A AADAC Missense_Mutation p.G313E 0.48 tolerated(0.12) possibly_damaging(0.461) TCGA-D3-A1QA-06 3 15686329 15686329 C T BTD Silent p.Y322Y 0.36 TCGA-D3-A1QA-06 3 164757739 164757739 C T SI Missense_Mutation p.S727N 0.33 deleterious(0) benign(0.039) TCGA-D3-A1QA-06 3 164907672 164907672 G A SLITRK3 Missense_Mutation p.S316F 0.42 tolerated(0.1) possibly_damaging(0.87) TCGA-D3-A1QA-06 3 179132722 179132722 C T GNB4 Silent p.K127K 0.45 TCGA-D3-A1QA-06 3 195516204 195516204 C T MUC4 Silent p.G749G 0.46 TCGA-D3-A1QA-06 3 195516819 195516819 C T MUC4 Silent p.E544E 0.51 TCGA-D3-A1QA-06 3 195938160 195938160 C T ZDHHC19 Silent p.P9P 0.27 TCGA-D3-A1QA-06 3 20136846 20136846 T A KAT2B Nonsense_Mutation p.C174* 0.45 TCGA-D3-A1QA-06 3 25777523 25777523 G A NGLY1 Missense_Mutation p.S374F 0.45 deleterious(0) probably_damaging(0.935) TCGA-D3-A1QA-06 3 3170722 3170722 C A TRNT1 5'UTR 0.15 TCGA-D3-A1QA-06 3 32022478 32022478 G A OSBPL10 Missense_Mutation p.P65L 0.29 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A1QA-06 3 37070385 37070385 T A MLH1 Nonsense_Mutation p.L507* 0.35 TCGA-D3-A1QA-06 3 38158038 38158038 G A DLEC1 Silent p.R1317R 0.34 TCGA-D3-A1QA-06 3 38158039 38158039 G A DLEC1 Missense_Mutation p.D1318N 0.35 deleterious(0.05) possibly_damaging(0.519) TCGA-D3-A1QA-06 3 38936092 38936092 C T SCN11A Missense_Mutation p.E923K 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A1QA-06 3 48626159 48626159 C T COL7A1 Missense_Mutation p.E835K 0.75 unknown(0) TCGA-D3-A1QA-06 3 48629347 48629347 T A COL7A1 Missense_Mutation p.E447D 0.60 unknown(0) TCGA-D3-A1QA-06 3 49701949 49701949 C T BSN Missense_Mutation p.P3901L 0.48 probably_damaging(0.981) TCGA-D3-A1QA-06 3 50255384 50255384 C T SLC38A3 RNA 0.25 TCGA-D3-A1QA-06 3 51274960 51274960 C T DOCK3 Missense_Mutation p.H681Y 0.56 deleterious(0) probably_damaging(0.993) TCGA-D3-A1QA-06 3 58135878 58135878 G C FLNB Missense_Mutation p.E2128D 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A1QA-06 3 65361455 65361455 C T MAGI1 Missense_Mutation p.G1054E 0.65 deleterious(0) probably_damaging(0.994) TCGA-D3-A1QA-06 3 75679939 75679939 C T MIR1324 RNA 0.14 TCGA-D3-A1QA-06 3 97868313 97868313 C T OR5H14 Silent p.F28F 0.39 TCGA-D3-A1QA-06 3 9958977 9958977 G A IL17RC 5'UTR 0.50 TCGA-D3-A1QA-06 4 100235017 100235017 C T ADH1B Silent p.V263V 0.41 TCGA-D3-A1QA-06 4 10446348 10446348 T C ZNF518B Silent p.A535A 0.43 TCGA-D3-A1QA-06 4 106377875 106377875 G A PPA2 Missense_Mutation p.P62L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 4 111539826 111539826 G A PITX2 Missense_Mutation p.R144W 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 4 123542159 123542159 G A IL21 Missense_Mutation p.S3F 0.50 tolerated_low_confidence(0.15) possibly_damaging(0.663) TCGA-D3-A1QA-06 4 156135508 156135508 C T NPY2R Silent p.I139I 0.37 TCGA-D3-A1QA-06 4 156618031 156618031 G A GUCY1A3 Silent p.T4T 0.17 TCGA-D3-A1QA-06 4 159573010 159573010 C T RXFP1 Missense_Mutation p.H693Y 0.44 tolerated(0.05) benign(0.106) TCGA-D3-A1QA-06 4 165962177 165962177 G A TRIM60 Missense_Mutation p.R318Q 0.49 tolerated(0.53) benign(0.019) TCGA-D3-A1QA-06 4 178358577 178358577 G A AGA Missense_Mutation p.R202C 0.50 tolerated(0.18) benign(0.013) TCGA-D3-A1QA-06 4 189068082 189068082 G A TRIML1 Silent p.P321P 0.39 TCGA-D3-A1QA-06 4 1957846 1957846 C T WHSC1 Missense_Mutation p.P938S 0.46 deleterious(0.01) probably_damaging(1) TCGA-D3-A1QA-06 4 25005432 25005432 G A LGI2 Nonsense_Mutation p.R427* 0.45 TCGA-D3-A1QA-06 4 2877836 2877836 C A ADD1 Missense_Mutation p.P65H 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 4 3465143 3465143 G A DOK7 Missense_Mutation p.R14Q 0.50 deleterious(0) possibly_damaging(0.893) TCGA-D3-A1QA-06 4 4199727 4199727 C T OTOP1 Silent p.Q278Q 0.39 TCGA-D3-A1QA-06 4 47565627 47565627 G A ATP10D Missense_Mutation p.E900K 0.40 deleterious(0) probably_damaging(0.976) TCGA-D3-A1QA-06 4 47939760 47939760 G A CNGA1 Silent p.L320L 0.40 TCGA-D3-A1QA-06 4 657927 657927 C T PDE6B Silent p.I682I 0.39 TCGA-D3-A1QA-06 4 70079874 70079874 G A UGT2B11 Silent p.F189F 0.69 TCGA-D3-A1QA-06 4 70898915 70898915 C T HTN3 Missense_Mutation p.S45L 0.18 deleterious_low_confidence(0.01) benign(0.005) TCGA-D3-A1QA-06 4 76861393 76861393 G A NAAA Intron 0.44 TCGA-D3-A1QA-06 4 88029343 88029343 C T AFF1 Missense_Mutation p.S470L 0.26 tolerated(0.1) unknown(0) TCGA-D3-A1QA-06 5 101572563 101572563 C T SLCO4C1 Silent p.%3D 0.38 TCGA-D3-A1QA-06 5 121488712 121488712 G A ZNF474 Missense_Mutation p.V343I 0.34 tolerated(0.2) benign(0.016) TCGA-D3-A1QA-06 5 137756405 137756405 C T KDM3B Silent p.S1242S 0.42 TCGA-D3-A1QA-06 5 13931332 13931332 C T DNAH5 Missense_Mutation p.E27K 0.38 benign(0.292) TCGA-D3-A1QA-06 5 140215081 140215081 G A PCDHA7 Silent p.L371L 0.47 TCGA-D3-A1QA-06 5 140215339 140215339 G A PCDHA7 Silent p.Q457Q 0.40 TCGA-D3-A1QA-06 5 140769605 140769605 C T PCDHGB4 Silent p.S718S 0.35 TCGA-D3-A1QA-06 5 140865557 140865557 C T PCDHGC4 Missense_Mutation p.P273S 0.38 tolerated(0.78) benign(0.01) TCGA-D3-A1QA-06 5 141335158 141335158 C T PCDH12 Silent p.R753R 0.43 TCGA-D3-A1QA-06 5 147040675 147040675 C T JAKMIP2 Missense_Mutation p.E155K 0.39 deleterious(0) probably_damaging(0.969) TCGA-D3-A1QA-06 5 147594566 147594566 C T SPINK6 3'UTR 0.50 TCGA-D3-A1QA-06 5 150322208 150322208 C T ZNF300P1 RNA 0.47 TCGA-D3-A1QA-06 5 150682882 150682882 G T SLC36A3 Missense_Mutation p.L12M 0.09 tolerated(0.21) possibly_damaging(0.73) TCGA-D3-A1QA-06 5 153085397 153085397 C T GRIA1 Silent p.F541F 0.43 TCGA-D3-A1QA-06 5 153174185 153174185 C T GRIA1 Missense_Mutation p.P769S 0.44 tolerated(0.17) possibly_damaging(0.595) TCGA-D3-A1QA-06 5 156747690 156747690 C T CYFIP2 Silent p.I491I 0.45 TCGA-D3-A1QA-06 5 157240099 157240099 G A CLINT1 Silent p.S163S 0.42 TCGA-D3-A1QA-06 5 168180945 168180945 C T SLIT3 Missense_Mutation p.E585K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1QA-06 5 168250273 168250273 G A SLIT3 Silent p.I207I 0.44 TCGA-D3-A1QA-06 5 169532973 169532973 C T FOXI1 Silent p.F4F 0.59 TCGA-D3-A1QA-06 5 170648799 170648799 G A RANBP17 Missense_Mutation p.G793R 0.39 deleterious(0.02) benign(0.056) TCGA-D3-A1QA-06 5 171638918 171638918 G A UBTD2 Silent p.F207F 0.42 TCGA-D3-A1QA-06 5 172396539 172396539 G A RPL26L1 Missense_Mutation p.E145K 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QA-06 5 177310974 177310974 C T RP11-423H2.1 RNA 0.53 TCGA-D3-A1QA-06 5 180056356 180056356 G A FLT4 Silent p.T296T 0.46 TCGA-D3-A1QA-06 5 180219417 180219417 G A MGAT1 Silent p.I185I 0.43 TCGA-D3-A1QA-06 5 23527798 23527798 G T PRDM9 Silent p.R867R 0.29 TCGA-D3-A1QA-06 5 35065415 35065415 C T PRLR Missense_Mutation p.V549M 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 5 35910027 35910027 C T CAPSL Missense_Mutation p.E156K 0.42 tolerated(0.15) benign(0.292) TCGA-D3-A1QA-06 5 38527298 38527298 C T LIFR Missense_Mutation p.G119E 0.38 tolerated(0.25) benign(0.037) TCGA-D3-A1QA-06 5 43294168 43294168 A C HMGCS1 Missense_Mutation p.D391E 0.22 deleterious(0.03) benign(0.115) TCGA-D3-A1QA-06 5 45262553 45262553 G A HCN1 Nonsense_Mutation p.R715* 0.51 TCGA-D3-A1QA-06 5 45645578 45645578 G A HCN1 Silent p.F186F 0.41 TCGA-D3-A1QA-06 5 50091099 50091099 C T PARP8 Missense_Mutation p.H426Y 0.38 tolerated_low_confidence(0.2) benign(0.05) TCGA-D3-A1QA-06 5 65108166 65108166 C T NLN Missense_Mutation p.S643F 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A1QA-06 5 70819834 70819834 C T BDP1 Missense_Mutation p.S1819F 0.45 deleterious(0.03) possibly_damaging(0.884) TCGA-D3-A1QA-06 5 78338222 78338222 C T DMGDH Silent p.L359L 0.39 TCGA-D3-A1QA-06 5 81549195 81549195 C T ATG10 Missense_Mutation p.P205L 0.42 deleterious(0.02) possibly_damaging(0.846) TCGA-D3-A1QA-06 5 89931004 89931004 A G GPR98 Missense_Mutation p.N638S 0.51 possibly_damaging(0.636) TCGA-D3-A1QA-06 5 90106807 90106807 C T GPR98 Missense_Mutation p.L5244F 0.48 benign(0) TCGA-D3-A1QA-06 5 96098933 96098933 C T ERAP1 Splice_Site p.X940_splice 0.35 TCGA-D3-A1QA-06 5 96504523 96504523 A T RIOK2 Missense_Mutation p.D271E 0.38 tolerated(0.7) benign(0.004) TCGA-D3-A1QA-06 6 107001438 107001438 G A AIM1 Missense_Mutation p.G1453S 0.44 deleterious(0.01) possibly_damaging(0.624) TCGA-D3-A1QA-06 6 128134390 128134390 G A THEMIS Missense_Mutation p.L466F 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A1QA-06 6 132874708 132874708 G A TAAR8 Missense_Mutation p.E293K 0.49 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A1QA-06 6 160829803 160829803 C T SLC22A3 Missense_Mutation p.S236L 0.41 tolerated(0.53) probably_damaging(0.999) TCGA-D3-A1QA-06 6 161071500 161071500 C T LPA Missense_Mutation p.D27N 0.39 tolerated(0.33) benign(0.387) TCGA-D3-A1QA-06 6 167711438 167711438 C T UNC93A Missense_Mutation p.L169F 0.41 tolerated(0.15) benign(0.004) TCGA-D3-A1QA-06 6 26123939 26123939 G A HIST1H2BC Missense_Mutation p.S65F 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.627) TCGA-D3-A1QA-06 6 26413833 26413833 C T BTN3A1 Silent p.F485F 0.23 TCGA-D3-A1QA-06 6 27879792 27879792 G A OR2B2 Silent p.F102F 0.67 TCGA-D3-A1QA-06 6 28268649 28268649 C T PGBD1 Nonsense_Mutation p.R340* 0.78 TCGA-D3-A1QA-06 6 29638086 29638086 G A MOG Nonsense_Mutation p.W207* 0.27 TCGA-D3-A1QA-06 6 31918923 31918923 G A CFB Missense_Mutation p.E1122K 0.68 tolerated(0.7) benign(0.014) TCGA-D3-A1QA-06 6 32010368 32010368 G A TNXB Missense_Mutation p.P454L 0.26 deleterious(0) probably_damaging(0.991) TCGA-D3-A1QA-06 6 32713773 32713773 C T HLA-DQA2 Silent p.F179F 0.19 TCGA-D3-A1QA-06 6 33652562 33652562 G A ITPR3 Missense_Mutation p.D1717N 0.26 tolerated(0.23) benign(0.373) TCGA-D3-A1QA-06 6 34499545 34499545 C T PACSIN1 Silent p.D402D 0.22 TCGA-D3-A1QA-06 6 348142 348142 A G DUSP22 Silent p.A101A 0.15 TCGA-D3-A1QA-06 6 348143 348143 T C DUSP22 Missense_Mutation p.Y102H 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A1QA-06 6 35803137 35803137 G A SRPK1 Missense_Mutation p.P638S 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 6 38834374 38834374 G A DNAH8 Missense_Mutation p.G1952E 0.26 probably_damaging(1) TCGA-D3-A1QA-06 6 42152631 42152631 C T GUCA1B Nonsense_Mutation p.W175* 0.39 TCGA-D3-A1QA-06 6 45459784 45459784 G A RUNX2 Silent p.Q264Q 0.64 TCGA-D3-A1QA-06 6 46293273 46293273 G A RCAN2 Intron 0.58 TCGA-D3-A1QA-06 6 46803091 46803091 C T MEP1A Missense_Mutation p.S630L 0.32 deleterious(0.04) benign(0.003) TCGA-D3-A1QA-06 6 49399402 49399402 A C MUT 3'UTR 0.27 TCGA-D3-A1QA-06 6 49705064 49705064 G A CRISP3 Missense_Mutation p.P39S 0.12 tolerated(0.1) benign(0.061) TCGA-D3-A1QA-06 6 54735455 54735455 A T FAM83B Missense_Mutation p.E137D 0.31 deleterious(0) probably_damaging(0.976) TCGA-D3-A1QA-06 6 54806270 54806270 C T FAM83B Missense_Mutation p.S834F 0.33 deleterious(0) probably_damaging(0.935) TCGA-D3-A1QA-06 6 73904447 73904447 C T KCNQ5 Silent p.Y722Y 0.43 TCGA-D3-A1QA-06 6 85466540 85466540 G A TBX18 Missense_Mutation p.S216L 0.29 deleterious(0) probably_damaging(0.992) TCGA-D3-A1QA-06 6 93956640 93956640 G A EPHA7 Missense_Mutation p.H866Y 0.39 tolerated(0.21) probably_damaging(0.979) TCGA-D3-A1QA-06 7 100192071 100192071 G A FBXO24 Missense_Mutation p.V325I 0.68 tolerated(0.11) benign(0.097) TCGA-D3-A1QA-06 7 100350305 100350305 C T ZAN Silent p.I859I 0.76 TCGA-D3-A1QA-06 7 100403198 100403198 G A EPHB4 Missense_Mutation p.P868L 0.13 tolerated(0.05) benign(0.308) TCGA-D3-A1QA-06 7 100682579 100682579 C T MUC17 Missense_Mutation p.P2628S 0.17 benign(0.432) TCGA-D3-A1QA-06 7 117175331 117175331 C T CFTR Silent p.I203I 0.56 TCGA-D3-A1QA-06 7 117243649 117243649 C T CFTR Silent p.I907I 0.26 TCGA-D3-A1QA-06 7 122769450 122769450 G A SLC13A1 Missense_Mutation p.L340F 0.74 deleterious(0) probably_damaging(0.997) TCGA-D3-A1QA-06 7 123104989 123104989 G A IQUB Silent p.V552V 0.12 TCGA-D3-A1QA-06 7 124386989 124386989 G A GPR37 Nonsense_Mutation p.R478* 0.31 TCGA-D3-A1QA-06 7 127222106 127222106 G A GCC1 Missense_Mutation p.P764S 0.79 tolerated(0.97) benign(0.002) TCGA-D3-A1QA-06 7 130147529 130147529 C T MEST 3'Flank 0.08 TCGA-D3-A1QA-06 7 134896291 134896291 G A WDR91 5'Flank 0.87 TCGA-D3-A1QA-06 7 139724492 139724492 G A PARP12 Silent p.P658P 0.77 TCGA-D3-A1QA-06 7 140453136 140453136 A C BRAF Missense_Mutation p.V600G 0.84 deleterious(0) possibly_damaging(0.497) TCGA-D3-A1QA-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.86 deleterious(0) possibly_damaging(0.838) TCGA-D3-A1QA-06 7 142028416 142028416 C T TRBV6-1 Silent p.S50S 0.10 TCGA-D3-A1QA-06 7 142566077 142566077 A G EPHB6 Missense_Mutation p.D666G 0.11 deleterious(0) probably_damaging(0.911) TCGA-D3-A1QA-06 7 143028681 143028681 C A CLCN1 Missense_Mutation p.L368M 0.83 deleterious(0.03) benign(0.37) TCGA-D3-A1QA-06 7 150027560 150027560 C T ZBED6CL Silent p.L23L 0.68 TCGA-D3-A1QA-06 7 150217787 150217787 C T GIMAP7 Missense_Mutation p.S242L 0.71 tolerated(0.39) benign(0.015) TCGA-D3-A1QA-06 7 150269319 150269319 A T GIMAP4 Missense_Mutation p.K54I 0.62 deleterious(0) probably_damaging(0.985) TCGA-D3-A1QA-06 7 151900066 151900066 G A KMT2C Nonsense_Mutation p.R1349* 0.20 TCGA-D3-A1QA-06 7 1586593 1586593 G A TMEM184A Silent p.L413L 0.45 TCGA-D3-A1QA-06 7 21906245 21906245 G T DNAH11 Missense_Mutation p.R3892I 0.41 probably_damaging(0.924) TCGA-D3-A1QA-06 7 21920343 21920343 G A DNAH11 Silent p.K4080K 0.41 TCGA-D3-A1QA-06 7 26225170 26225170 G A NFE2L3 Missense_Mutation p.E618K 0.33 deleterious(0.02) possibly_damaging(0.715) TCGA-D3-A1QA-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.59 tolerated(0.19) benign(0.198) TCGA-D3-A1QA-06 7 38398612 38398612 G A TRGV3 5'UTR 0.67 TCGA-D3-A1QA-06 7 38402966 38402966 G A TRGV2 5'UTR 0.53 TCGA-D3-A1QA-06 7 44247782 44247782 G A YKT6 Silent p.E148E 0.27 TCGA-D3-A1QA-06 7 45632490 45632490 G A ADCY1 Missense_Mutation p.D258N 0.46 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A1QA-06 7 62758710 62758710 C T ZNF733P RNA 0.43 TCGA-D3-A1QA-06 7 65553802 65553802 C T ASL Silent p.L243L 0.88 TCGA-D3-A1QA-06 7 7283367 7283367 C T C1GALT1 3'UTR 0.53 TCGA-D3-A1QA-06 7 7516792 7516792 C T COL28A1 Missense_Mutation p.G395E 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 7 87180059 87180059 G A ABCB1 Silent p.I365I 0.66 TCGA-D3-A1QA-06 7 92732356 92732356 C T SAMD9 Missense_Mutation p.D1019N 0.56 tolerated(0.15) benign(0.013) TCGA-D3-A1QA-06 7 98554098 98554098 C T TRRAP Missense_Mutation p.S2051F 0.70 possibly_damaging(0.619) TCGA-D3-A1QA-06 7 99690504 99690504 G A MCM7 3'UTR 0.19 TCGA-D3-A1QA-06 8 10285828 10285828 C T MSRA 3'UTR 0.30 TCGA-D3-A1QA-06 8 10756350 10756350 C T XKR6 Silent p.R346R 0.51 TCGA-D3-A1QA-06 8 109468135 109468135 T A EMC2 Silent p.I113I 0.12 TCGA-D3-A1QA-06 8 11710136 11710136 C T CTSB Silent p.G65G 0.34 TCGA-D3-A1QA-06 8 118819584 118819584 G A EXT1 Silent p.F585F 0.42 TCGA-D3-A1QA-06 8 143399925 143399925 G A TSNARE1 Silent p.L322L 0.42 TCGA-D3-A1QA-06 8 24811711 24811711 C T CTD-2168K21.2 5'Flank 0.39 TCGA-D3-A1QA-06 8 26627548 26627548 C T ADRA1A Intron 0.68 TCGA-D3-A1QA-06 8 33369706 33369706 G A TTI2 Silent p.G142G 0.38 TCGA-D3-A1QA-06 8 38184340 38184340 C A WHSC1L1 Missense_Mutation p.G539V 0.43 tolerated(0.23) possibly_damaging(0.477) TCGA-D3-A1QA-06 8 39468132 39468132 G A ADAM18 Missense_Mutation p.M143I 0.42 tolerated(1) benign(0.001) TCGA-D3-A1QA-06 8 53084982 53084982 C T ST18 Missense_Mutation p.E147K 0.45 deleterious(0.01) benign(0.19) TCGA-D3-A1QA-06 8 56436522 56436522 C T XKR4 Silent p.F563F 0.61 TCGA-D3-A1QA-06 8 61769341 61769341 C T CHD7 Missense_Mutation p.S2501F 0.42 possibly_damaging(0.806) TCGA-D3-A1QA-06 8 69032459 69032459 G A PREX2 Missense_Mutation p.G1178E 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 8 73480030 73480030 C T KCNB2 Missense_Mutation p.P21S 0.48 deleterious(0.01) possibly_damaging(0.574) TCGA-D3-A1QA-06 8 86358512 86358512 G T CA3 Missense_Mutation p.V217L 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-D3-A1QA-06 8 8998636 8998636 G A PPP1R3B Missense_Mutation p.P176S 0.49 tolerated(0.07) benign(0.217) TCGA-D3-A1QA-06 8 8998818 8998818 G A PPP1R3B Missense_Mutation p.S115F 0.46 deleterious(0.02) benign(0.049) TCGA-D3-A1QA-06 8 99963037 99963037 C T OSR2 Intron 0.54 TCGA-D3-A1QA-06 9 112017848 112017848 C T EPB41L4B Missense_Mutation p.G371E 0.89 tolerated(0.73) benign(0.112) TCGA-D3-A1QA-06 9 113562667 113562667 T G MUSK Missense_Mutation p.M670R 0.85 tolerated(0.97) benign(0.002) TCGA-D3-A1QA-06 9 114131447 114131448 - T KIAA0368 Frame_Shift_Ins p.L1839Tfs*2 0.47 TCGA-D3-A1QA-06 9 116721 116721 G A FOXD4 3'UTR 0.17 TCGA-D3-A1QA-06 9 119204829 119204829 G A ASTN2 Silent p.F1116F 0.81 TCGA-D3-A1QA-06 9 119903672 119903672 G A ASTN2 Intron 0.81 TCGA-D3-A1QA-06 9 131071999 131071999 G A TRUB2 Silent p.L276L 0.78 TCGA-D3-A1QA-06 9 136082650 136082650 C T OBP2B Silent p.Q117Q 0.81 TCGA-D3-A1QA-06 9 137622286 137622286 C T COL5A1 Missense_Mutation p.P377S 0.73 probably_damaging(0.998) TCGA-D3-A1QA-06 9 35813317 35813317 G A HINT2 Missense_Mutation p.L116F 0.60 tolerated(0.12) benign(0.275) TCGA-D3-A1QA-06 9 35813318 35813318 G A HINT2 Silent p.L115L 0.60 TCGA-D3-A1QA-06 9 418204 418204 C T DOCK8 Silent p.S1279S 0.58 TCGA-D3-A1QA-06 9 8500886 8500886 G A PTPRD Missense_Mutation p.P666S 0.26 tolerated(0.33) benign(0) TCGA-D3-A1QA-06 9 8528774 8528774 G A PTPRD Nonsense_Mutation p.Q120* 0.17 TCGA-D3-A1QA-06 9 916815 916815 C T DMRT1 Missense_Mutation p.S292F 0.72 deleterious(0) probably_damaging(0.989) TCGA-D3-A1QA-06 X 111156002 111156002 G A TRPC5 Silent p.F139F 0.86 TCGA-D3-A1QA-06 X 118221520 118221520 G A KIAA1210 Missense_Mutation p.P1225S 0.83 tolerated(0.22) benign(0.101) TCGA-D3-A1QA-06 X 131218544 131218544 G A FRMD7 Missense_Mutation p.L239F 0.89 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 X 135430340 135430340 C T GPR112 Missense_Mutation p.P1492L 0.74 deleterious(0) possibly_damaging(0.738) TCGA-D3-A1QA-06 X 148664882 148664882 G A MAGEA9B 5'UTR 0.52 TCGA-D3-A1QA-06 X 154088762 154088762 G A F8 Missense_Mutation p.S2282F 0.82 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QA-06 X 155004374 155004374 C T SPRY3 Missense_Mutation p.P281S 0.34 tolerated(0.07) benign(0.001) TCGA-D3-A1QA-06 X 2933378 2933378 G A ARSH Missense_Mutation p.M236I 0.95 tolerated(0.1) benign(0.266) TCGA-D3-A1QA-06 X 49173731 49173731 C T GAGE10 Silent p.L98L 0.93 TCGA-D3-A1QA-06 X 99901311 99901311 C T SRPX2 5'UTR 0.78 TCGA-D3-A1QB-06 10 105938826 105938826 C T WDR96 Silent p.R807R 0.17 TCGA-D3-A1QB-06 10 116207724 116207724 G A ABLIM1 Silent p.F550F 0.17 TCGA-D3-A1QB-06 10 121436223 121436223 C T BAG3 Missense_Mutation p.S386F 0.25 deleterious(0.02) benign(0.184) TCGA-D3-A1QB-06 10 124810604 124810604 G A ACADSB Missense_Mutation p.E344K 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A1QB-06 10 12940427 12940427 G A CCDC3 Silent p.L268L 0.16 TCGA-D3-A1QB-06 10 24884069 24884069 G A ARHGAP21 Missense_Mutation p.R1255C 0.21 deleterious(0) probably_damaging(0.968) TCGA-D3-A1QB-06 10 30316689 30316689 C T KIAA1462 Silent p.G796G 0.26 TCGA-D3-A1QB-06 10 37430958 37430958 G A ANKRD30A Missense_Mutation p.G322E 0.21 tolerated(1) benign(0.097) TCGA-D3-A1QB-06 10 50944543 50944543 G A OGDHL Missense_Mutation p.P872S 0.17 tolerated(0.05) benign(0.005) TCGA-D3-A1QB-06 10 61802439 61802439 C T ANK3 3'UTR 0.19 TCGA-D3-A1QB-06 10 70645007 70645007 C T STOX1 Silent p.S485S 0.11 TCGA-D3-A1QB-06 10 71164782 71164782 C T TACR2 Missense_Mutation p.E333K 0.18 tolerated(0.91) benign(0.009) TCGA-D3-A1QB-06 10 73494026 73494026 C T CDH23 Silent p.D1383D 0.29 TCGA-D3-A1QB-06 10 75277230 75277230 G A USP54 Missense_Mutation p.S985F 0.13 tolerated_low_confidence(0.05) benign(0.004) TCGA-D3-A1QB-06 10 76739023 76739023 C T KAT6B Silent p.Y719Y 0.14 TCGA-D3-A1QB-06 10 81317204 81317204 C T SFTPA2 Missense_Mutation p.E170K 0.16 deleterious(0.02) probably_damaging(1) TCGA-D3-A1QB-06 10 88752110 88752110 G A RP11-96C23.5 RNA 0.25 TCGA-D3-A1QB-06 10 90767523 90767523 G A FAS Missense_Mutation p.G88E 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 10 95400236 95400236 G A PDE6C Silent p.R553R 0.30 TCGA-D3-A1QB-06 11 118498622 118498622 C T PHLDB1 Silent p.I361I 0.30 TCGA-D3-A1QB-06 11 134188887 134188887 C T GLB1L3 3'UTR 0.33 TCGA-D3-A1QB-06 11 2946301 2946301 C T SLC22A18 Silent p.V383V 0.18 TCGA-D3-A1QB-06 11 46564360 46564360 G A AMBRA1 Missense_Mutation p.P313S 0.22 deleterious_low_confidence(0.01) benign(0.231) TCGA-D3-A1QB-06 11 46747451 46747451 G A F2 Missense_Mutation p.G201D 0.27 tolerated(0.68) benign(0.003) TCGA-D3-A1QB-06 11 48328637 48328637 G A OR4S1 Missense_Mutation p.R288K 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A1QB-06 11 5264439 5264439 G A HBG1 3'Flank 0.36 TCGA-D3-A1QB-06 11 5364734 5364734 G A OR51B5 Silent p.S7S 0.22 TCGA-D3-A1QB-06 11 56380100 56380100 C T OR5M1 Silent p.R293R 0.21 TCGA-D3-A1QB-06 11 56380251 56380251 G A OR5M1 Missense_Mutation p.S243F 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 11 57157409 57157409 G A PRG2 Silent p.L3L 0.13 TCGA-D3-A1QB-06 11 58170825 58170825 C T OR5B3 Missense_Mutation p.E20K 0.11 tolerated_low_confidence(0.11) benign(0.013) TCGA-D3-A1QB-06 11 58482865 58482865 C T GLYAT Missense_Mutation p.G38E 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A1QB-06 11 59132415 59132415 G A OR5AN1 Missense_Mutation p.G162S 0.13 tolerated(0.39) benign(0.09) TCGA-D3-A1QB-06 11 62763520 62763520 C T SLC22A8 Missense_Mutation p.G289E 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QB-06 11 63885183 63885183 G A FLRT1 Missense_Mutation p.E482K 0.22 deleterious(0) possibly_damaging(0.891) TCGA-D3-A1QB-06 11 6459666 6459666 G A HPX Missense_Mutation p.P137L 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 11 64853932 64853932 C T ZFPL1 Missense_Mutation p.P87L 0.18 deleterious(0) possibly_damaging(0.561) TCGA-D3-A1QB-06 11 65265605 65265605 C T MALAT1 RNA 0.22 TCGA-D3-A1QB-06 11 65402031 65402031 C T PCNXL3 Missense_Mutation p.S1575F 0.39 deleterious(0) probably_damaging(0.971) TCGA-D3-A1QB-06 11 65408626 65408626 C T SIPA1 Silent p.A78A 0.18 TCGA-D3-A1QB-06 11 65429188 65429188 G A RELA Missense_Mutation p.A102V 0.15 tolerated(0.24) possibly_damaging(0.559) TCGA-D3-A1QB-06 11 65983685 65983685 C A PACS1 Silent p.S252S 0.23 TCGA-D3-A1QB-06 11 66283164 66283164 G A BBS1 Silent p.R160R 0.24 TCGA-D3-A1QB-06 11 66372865 66372865 G A CCS Missense_Mutation p.R182K 0.12 tolerated(0.07) benign(0.099) TCGA-D3-A1QB-06 11 66626527 66626527 C T LRFN4 Nonsense_Mutation p.Q438* 0.21 TCGA-D3-A1QB-06 11 78383149 78383149 C T TENM4 Missense_Mutation p.D1908N 0.14 tolerated(0.08) probably_damaging(0.969) TCGA-D3-A1QB-06 11 95532426 95532426 G A CEP57 Missense_Mutation p.G26R 0.28 deleterious(0.01) benign(0.05) TCGA-D3-A1QB-06 12 102811511 102811511 C T IGF1 3'UTR 0.25 TCGA-D3-A1QB-06 12 10588483 10588483 C T KLRC2 Missense_Mutation p.E35K 0.17 deleterious(0.03) benign(0.418) TCGA-D3-A1QB-06 12 106851069 106851069 C T POLR3B Missense_Mutation p.S816F 0.28 tolerated(0.16) benign(0.008) TCGA-D3-A1QB-06 12 108589547 108589547 C T WSCD2 5'UTR 0.29 TCGA-D3-A1QB-06 12 111291224 111291224 A G CCDC63 Missense_Mutation p.R9G 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 12 112926862 112926862 C T PTPN11 Silent p.I494I 0.20 TCGA-D3-A1QB-06 12 113386914 113386914 G A OAS3 Silent p.P426P 0.19 TCGA-D3-A1QB-06 12 120156162 120156162 C T CIT Silent p.A1352A 0.18 TCGA-D3-A1QB-06 12 124289424 124289424 G A DNAH10 Missense_Mutation p.D824N 0.19 benign(0.18) TCGA-D3-A1QB-06 12 125834259 125834259 C T TMEM132B Missense_Mutation p.S105F 0.26 deleterious(0.02) possibly_damaging(0.6) TCGA-D3-A1QB-06 12 129566428 129566446 GAGCCCAGCAGGTGGGCCA - TMEM132D Frame_Shift_Del p.L594Qfs*10 0.17 TCGA-D3-A1QB-06 12 13241841 13241841 C T GSG1 Missense_Mutation p.E123K 0.16 deleterious(0.03) benign(0.347) TCGA-D3-A1QB-06 12 13715964 13715964 G A GRIN2B Missense_Mutation p.S1403F 0.50 deleterious(0.02) benign(0.272) TCGA-D3-A1QB-06 12 13716235 13716235 C T GRIN2B Missense_Mutation p.E1313K 0.21 deleterious(0.04) benign(0.362) TCGA-D3-A1QB-06 12 13761657 13761657 G A GRIN2B Silent p.I630I 0.16 TCGA-D3-A1QB-06 12 15067692 15067692 T A ERP27 Nonsense_Mutation p.K267* 0.31 TCGA-D3-A1QB-06 12 369078 369078 C T SLC6A13 Silent p.G47G 0.15 TCGA-D3-A1QB-06 12 39696939 39696939 T G KIF21A Splice_Site p.X1521_splice 0.19 TCGA-D3-A1QB-06 12 40001459 40001459 C T ABCD2 Missense_Mutation p.R393Q 0.22 deleterious(0) possibly_damaging(0.82) TCGA-D3-A1QB-06 12 52168020 52168020 C T SCN8A Silent p.I1231I 0.14 TCGA-D3-A1QB-06 12 53715389 53715389 G A AAAS 5'UTR 0.26 TCGA-D3-A1QB-06 12 55420829 55420829 C T NEUROD4 Silent p.F202F 0.19 TCGA-D3-A1QB-06 12 56090749 56090749 G A ITGA7 Silent p.A561A 0.18 TCGA-D3-A1QB-06 12 56495582 56495582 G A ERBB3 Missense_Mutation p.E1258K 0.21 tolerated(0.1) benign(0.386) TCGA-D3-A1QB-06 12 57003922 57003922 G A BAZ2A Silent p.F621F 0.12 TCGA-D3-A1QB-06 12 7050126 7050126 C T ATN1 Missense_Mutation p.P1100S 0.14 probably_damaging(0.981) TCGA-D3-A1QB-06 12 8330019 8330019 G A ZNF705A Missense_Mutation p.R248K 0.20 tolerated(0.1) benign(0.231) TCGA-D3-A1QB-06 12 91347766 91347766 C T CCER1 Missense_Mutation p.G252S 0.18 tolerated(1) benign(0.009) TCGA-D3-A1QB-06 12 98938241 98938241 C T TMPO Missense_Mutation p.R229C 0.29 deleterious(0.02) benign(0.409) TCGA-D3-A1QB-06 13 110831344 110831344 G A COL4A1 Missense_Mutation p.S795F 0.16 possibly_damaging(0.652) TCGA-D3-A1QB-06 13 24895623 24895623 A T C1QTNF9 Missense_Mutation p.K240I 0.11 deleterious(0) possibly_damaging(0.894) TCGA-D3-A1QB-06 13 32914693 32914693 C T BRCA2 Silent p.S2067S 0.30 TCGA-D3-A1QB-06 13 41706525 41706525 C A KBTBD6 Missense_Mutation p.K41N 0.21 tolerated(0.07) benign(0.199) TCGA-D3-A1QB-06 13 49027168 49027168 C T RB1 Nonsense_Mutation p.R579* 0.21 TCGA-D3-A1QB-06 13 60240757 60240757 G A DIAPH3 Silent p.P1181P 0.21 TCGA-D3-A1QB-06 13 60240758 60240758 G A DIAPH3 Missense_Mutation p.P1181L 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A1QB-06 13 73482807 73482807 C G PIBF1 Missense_Mutation p.Q543E 0.29 deleterious(0) probably_damaging(0.968) TCGA-D3-A1QB-06 13 78214852 78214852 C T SCEL Missense_Mutation p.P627L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 14 100123373 100123373 C G HHIPL1 Missense_Mutation p.H313Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QB-06 14 101348394 101348394 G A RTL1 Missense_Mutation p.S911F 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A1QB-06 14 106090879 106090879 G A IGHG4 Silent p.S306S 0.13 TCGA-D3-A1QB-06 14 106109828 106109828 G A IGHG2 Silent p.P231P 0.16 TCGA-D3-A1QB-06 14 106236259 106236259 C T IGHG3 Missense_Mutation p.M182I 0.23 tolerated(0.14) benign(0.244) TCGA-D3-A1QB-06 14 107034755 107034755 C T IGHV5-51 Missense_Mutation p.D109N 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A1QB-06 14 107211365 107211365 G A IGHV3-73 Silent p.F9F 0.23 TCGA-D3-A1QB-06 14 20404563 20404563 G A OR4K1 Silent p.V246V 0.19 TCGA-D3-A1QB-06 14 20502848 20502848 G A OR4K13 Nonsense_Mutation p.Q24* 0.16 TCGA-D3-A1QB-06 14 24800431 24800431 C T ADCY4 Silent p.K267K 0.23 TCGA-D3-A1QB-06 14 38679658 38679658 C T SSTR1 Missense_Mutation p.A355V 0.16 deleterious(0.01) benign(0.355) TCGA-D3-A1QB-06 14 63842813 63842813 C G PPP2R5E Missense_Mutation p.E440Q 0.31 tolerated(0.43) benign(0.037) TCGA-D3-A1QB-06 14 74062179 74062179 G A ACOT4 Missense_Mutation p.E363K 0.25 deleterious(0) probably_damaging(0.964) TCGA-D3-A1QB-06 14 76905728 76905728 G A ESRRB Missense_Mutation p.S11N 0.18 deleterious_low_confidence(0.04) benign(0.019) TCGA-D3-A1QB-06 14 76906080 76906080 G A ESRRB Silent p.K128K 0.31 TCGA-D3-A1QB-06 14 78399873 78399873 C T ADCK1 3'UTR 0.31 TCGA-D3-A1QB-06 14 90650623 90650623 G A KCNK13 Missense_Mutation p.R168Q 0.16 tolerated(0.28) benign(0.006) TCGA-D3-A1QB-06 15 102192587 102192587 C T TM2D3 5'Flank 0.44 TCGA-D3-A1QB-06 15 20649560 20649560 C T HERC2P3 RNA 0.08 TCGA-D3-A1QB-06 15 22332607 22332607 C T RP11-69H14.6 RNA 0.12 TCGA-D3-A1QB-06 15 24922699 24922699 C T NPAP1 Missense_Mutation p.S562F 0.26 tolerated(0.17) probably_damaging(0.982) TCGA-D3-A1QB-06 15 42167048 42167048 G C SPTBN5 Missense_Mutation p.H1498Q 0.38 benign(0.251) TCGA-D3-A1QB-06 15 43818368 43818368 A G MAP1A Missense_Mutation p.E1566G 0.17 benign(0.019) TCGA-D3-A1QB-06 15 44093890 44093890 A C HYPK Intron 0.11 TCGA-D3-A1QB-06 15 50152464 50152464 C T ATP8B4 Nonsense_Mutation p.W1169* 0.19 TCGA-D3-A1QB-06 15 66797185 66797185 G A RPL4 5'UTR 0.43 TCGA-D3-A1QB-06 15 69347814 69347814 C T NOX5 Nonsense_Mutation p.Q714* 0.19 TCGA-D3-A1QB-06 15 72691128 72691128 C T TMEM202 Silent p.I72I 0.17 TCGA-D3-A1QB-06 15 75499697 75499697 C T C15orf39 Silent p.A436A 0.16 TCGA-D3-A1QB-06 15 78588041 78588041 G A WDR61 5'UTR 0.16 TCGA-D3-A1QB-06 15 79185883 79185883 C T MORF4L1 Silent p.L220L 0.13 TCGA-D3-A1QB-06 15 89003039 89003039 G A MRPL46 Silent p.F215F 0.22 TCGA-D3-A1QB-06 15 90799000 90799000 T A TTLL13 Missense_Mutation p.F144Y 0.20 deleterious(0.03) probably_damaging(0.919) TCGA-D3-A1QB-06 16 10032355 10032355 C T GRIN2A Silent p.T156T 0.15 TCGA-D3-A1QB-06 16 11000964 11000964 C T CIITA Nonsense_Mutation p.R539* 0.14 TCGA-D3-A1QB-06 16 1245940 1245940 C T CACNA1H Missense_Mutation p.S187L 0.24 deleterious(0.05) probably_damaging(0.997) TCGA-D3-A1QB-06 16 22358777 22358777 C T CDR2 Missense_Mutation p.E292K 0.37 tolerated(0.09) possibly_damaging(0.623) TCGA-D3-A1QB-06 16 23695367 23695367 C T PLK1 Silent p.S331S 0.12 TCGA-D3-A1QB-06 16 24358126 24358126 G A CACNG3 Missense_Mutation p.E95K 0.36 deleterious(0.01) possibly_damaging(0.698) TCGA-D3-A1QB-06 16 28468264 28468264 C T NPIPB7 Silent p.R242R 0.27 TCGA-D3-A1QB-06 16 29913155 29913155 G A ASPHD1 Missense_Mutation p.G288D 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QB-06 16 31473806 31473806 T G ARMC5 Missense_Mutation p.L313R 0.26 tolerated(0.05) probably_damaging(0.992) TCGA-D3-A1QB-06 16 57996902 57996902 G C CNGB1 Missense_Mutation p.H119Q 0.08 tolerated_low_confidence(0.31) benign(0.043) TCGA-D3-A1QB-06 16 58749966 58749966 G A GOT2 Missense_Mutation p.A324V 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A1QB-06 16 58753135 58753135 C A GOT2 Nonsense_Mutation p.G134* 0.15 TCGA-D3-A1QB-06 16 65016033 65016033 C T CDH11 Missense_Mutation p.E391K 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A1QB-06 16 67132620 67132620 G A CBFB Missense_Mutation p.R168K 0.16 tolerated(0.67) benign(0.269) TCGA-D3-A1QB-06 16 67688253 67688253 C T RLTPR Silent p.D1080D 0.22 TCGA-D3-A1QB-06 16 684474 684474 G C C16orf13 3'UTR 0.22 TCGA-D3-A1QB-06 16 70500048 70500048 C T FUK Missense_Mutation p.P100L 0.24 tolerated(0.13) benign(0.042) TCGA-D3-A1QB-06 16 7382981 7382981 G A RBFOX1 5'UTR 0.21 TCGA-D3-A1QB-06 17 10233797 10233797 C A MYH13 Missense_Mutation p.R781I 0.13 deleterious(0) probably_damaging(0.992) TCGA-D3-A1QB-06 17 10432356 10432356 C T MYH2 Missense_Mutation p.R1132Q 0.25 deleterious(0.05) possibly_damaging(0.453) TCGA-D3-A1QB-06 17 11535913 11535913 A T DNAH9 Missense_Mutation p.N510Y 0.16 possibly_damaging(0.617) TCGA-D3-A1QB-06 17 17719280 17719280 G A SREBF1 Silent p.A789A 0.25 TCGA-D3-A1QB-06 17 18565629 18565629 G A ZNF286B Missense_Mutation p.S397F 0.19 deleterious(0.04) probably_damaging(0.982) TCGA-D3-A1QB-06 17 27086634 27086634 C T FAM222B Missense_Mutation p.D115N 0.30 tolerated(0.32) probably_damaging(0.981) TCGA-D3-A1QB-06 17 27086635 27086635 C T FAM222B Silent p.K114K 0.30 TCGA-D3-A1QB-06 17 27493524 27493524 G A MYO18A Silent p.S145S 0.33 TCGA-D3-A1QB-06 17 2966565 2966565 G A OR1D5 Missense_Mutation p.L113F 0.14 tolerated(1) benign(0.075) TCGA-D3-A1QB-06 17 30661605 30661605 G A C17orf75 Missense_Mutation p.L252F 0.17 deleterious(0) probably_damaging(0.995) TCGA-D3-A1QB-06 17 36873075 36873075 T C MLLT6 Silent p.L498L 0.25 TCGA-D3-A1QB-06 17 38430097 38430097 C T WIPF2 Silent p.P342P 0.18 TCGA-D3-A1QB-06 17 38641257 38641257 G A TNS4 Missense_Mutation p.P431S 0.20 tolerated(0.14) benign(0.064) TCGA-D3-A1QB-06 17 39021105 39021105 C T KRT12 Missense_Mutation p.E254K 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 17 3916868 3916868 G A ZZEF1 Silent p.V2818V 0.21 TCGA-D3-A1QB-06 17 40332925 40332925 G A KCNH4 Silent p.T13T 0.21 TCGA-D3-A1QB-06 17 40332926 40332926 G A KCNH4 Missense_Mutation p.T13I 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A1QB-06 17 40717008 40717008 C T COASY Silent p.L444L 0.22 TCGA-D3-A1QB-06 17 41103881 41103881 C T AARSD1 Missense_Mutation p.E347K 0.15 tolerated(0.06) benign(0.041) TCGA-D3-A1QB-06 17 41607273 41607273 C G ETV4 Missense_Mutation p.V312L 0.19 deleterious(0.04) benign(0.228) TCGA-D3-A1QB-06 17 4576956 4576956 G A PELP1 Silent p.T532T 0.18 TCGA-D3-A1QB-06 17 45822469 45822469 C T TBX21 Missense_Mutation p.R449C 0.25 tolerated(0.09) benign(0) TCGA-D3-A1QB-06 17 48193396 48193396 C T SAMD14 Silent p.K186K 0.13 TCGA-D3-A1QB-06 17 48264038 48264038 G A COL1A1 Silent p.C1259C 0.16 TCGA-D3-A1QB-06 17 4856180 4856180 G A ENO3 Missense_Mutation p.G59E 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D3-A1QB-06 17 48762092 48762092 C T ABCC3 Missense_Mutation p.T1379I 0.15 deleterious(0) probably_damaging(0.976) TCGA-D3-A1QB-06 17 5347750 5347750 G A DHX33 Silent p.A633A 0.18 TCGA-D3-A1QB-06 17 61568324 61568324 G A ACE Nonsense_Mutation p.W884* 0.19 TCGA-D3-A1QB-06 17 78262068 78262068 A T RNF213 Missense_Mutation p.Q239L 0.27 benign(0.059) TCGA-D3-A1QB-06 17 7945753 7945753 C T ALOX15B Silent p.L172L 0.11 TCGA-D3-A1QB-06 17 8808203 8808203 G A PIK3R5 Silent p.L101L 0.15 TCGA-D3-A1QB-06 18 10471953 10471953 C T APCDD1 Silent p.L223L 0.12 TCGA-D3-A1QB-06 18 28923429 28923429 G A DSG1 Missense_Mutation p.M568I 0.12 deleterious(0.01) benign(0.014) TCGA-D3-A1QB-06 18 3214983 3214983 G A MYOM1 Missense_Mutation p.S80F 0.36 deleterious_low_confidence(0) benign(0.052) TCGA-D3-A1QB-06 18 44656643 44656643 G A HDHD2 Missense_Mutation p.H123Y 0.32 tolerated(0.13) benign(0.005) TCGA-D3-A1QB-06 18 46860203 46860203 G A DYM Missense_Mutation p.S172L 0.24 tolerated(0.29) benign(0.006) TCGA-D3-A1QB-06 18 51858171 51858171 C T STARD6 Missense_Mutation p.R109Q 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 18 52596077 52596077 C T CCDC68 Missense_Mutation p.E213K 0.22 tolerated(0.07) possibly_damaging(0.604) TCGA-D3-A1QB-06 18 61387272 61387272 G A SERPINB11 Silent p.K167K 0.23 TCGA-D3-A1QB-06 18 6898607 6898607 G A ARHGAP28 Intron 0.21 TCGA-D3-A1QB-06 19 12800953 12800953 G A FBXW9 Intron 0.14 TCGA-D3-A1QB-06 19 22585612 22585612 C T ZNF98 Missense_Mutation p.E78K 0.09 tolerated(0.09) benign(0.074) TCGA-D3-A1QB-06 19 33450905 33450905 G A CEP89 Missense_Mutation p.P69L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 19 35251284 35251284 G A ZNF599 Missense_Mutation p.P141L 0.24 tolerated(0.24) benign(0.002) TCGA-D3-A1QB-06 19 37642468 37642468 G A ZNF585A 3'UTR 0.17 TCGA-D3-A1QB-06 19 39948936 39948936 G A SUPT5H Missense_Mutation p.E104K 0.22 tolerated(0.27) probably_damaging(0.926) TCGA-D3-A1QB-06 19 42190975 42190975 C T CEACAM7 Missense_Mutation p.G81E 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-D3-A1QB-06 19 42342325 42342325 C T LYPD4 Silent p.R74R 0.26 TCGA-D3-A1QB-06 19 42342326 42342326 C T LYPD4 Missense_Mutation p.R74K 0.27 tolerated(1) benign(0.005) TCGA-D3-A1QB-06 19 42381431 42381431 C T CD79A Silent p.F19F 0.20 TCGA-D3-A1QB-06 19 45997625 45997625 G A RTN2 Missense_Mutation p.P205S 0.23 deleterious_low_confidence(0) benign(0.1) TCGA-D3-A1QB-06 19 48968055 48968055 C T KCNJ14 3'UTR 0.24 TCGA-D3-A1QB-06 19 51633275 51633275 G C SIGLEC9 Intron 0.23 TCGA-D3-A1QB-06 19 51918568 51918568 C T SIGLEC10 Silent p.L399L 0.16 TCGA-D3-A1QB-06 19 52272419 52272419 C T FPR2 Missense_Mutation p.P170S 0.27 tolerated(0.6) benign(0.016) TCGA-D3-A1QB-06 19 54307240 54307240 G A NLRP12 Silent p.L851L 0.15 TCGA-D3-A1QB-06 19 55450300 55450300 G A NLRP7 Silent p.F629F 0.27 TCGA-D3-A1QB-06 19 56329409 56329409 C T NLRP11 Silent p.L44L 0.19 TCGA-D3-A1QB-06 19 56515323 56515323 G A NLRP5 Missense_Mutation p.E102K 0.18 tolerated(0.38) benign(0.008) TCGA-D3-A1QB-06 19 58945209 58945209 C T ZNF132 Nonsense_Mutation p.W534* 0.21 TCGA-D3-A1QB-06 19 6921867 6921867 C T EMR1 Silent p.A588A 0.22 TCGA-D3-A1QB-06 19 7914195 7914195 C T EVI5L Silent p.I202I 0.30 TCGA-D3-A1QB-06 19 9064689 9064689 G A MUC16 Missense_Mutation p.S7586F 0.20 unknown(0) TCGA-D3-A1QB-06 19 9070973 9070973 C T MUC16 Silent p.E5491E 0.20 TCGA-D3-A1QB-06 19 9077538 9077538 C T MUC16 Missense_Mutation p.G3303E 0.40 unknown(0) TCGA-D3-A1QB-06 19 9084244 9084244 G A MUC16 Missense_Mutation p.P2524L 0.23 unknown(0) TCGA-D3-A1QB-06 19 9270856 9270856 C T ZNF317 Missense_Mutation p.P179S 0.25 tolerated(1) benign(0.002) TCGA-D3-A1QB-06 1 109270531 109270531 G A FNDC7 Missense_Mutation p.A405T 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 1 109803705 109803705 C T CELSR2 Missense_Mutation p.P1334S 0.23 tolerated(0.17) benign(0.067) TCGA-D3-A1QB-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.15 deleterious(0) benign(0.109) TCGA-D3-A1QB-06 1 12416532 12416532 A G VPS13D Missense_Mutation p.S3317G 0.21 benign(0.043) TCGA-D3-A1QB-06 1 12416533 12416533 G A VPS13D Missense_Mutation p.S3317N 0.21 benign(0.086) TCGA-D3-A1QB-06 1 12445374 12445374 C T VPS13D Missense_Mutation p.P3809L 0.24 probably_damaging(0.991) TCGA-D3-A1QB-06 1 12835271 12835271 A C PRAMEF12 Silent p.A87A 0.33 TCGA-D3-A1QB-06 1 143767485 143767485 A G PPIAL4G Silent p.L122L 0.11 TCGA-D3-A1QB-06 1 145535786 145535786 C T ITGA10 Silent p.A658A 0.25 TCGA-D3-A1QB-06 1 150236068 150236068 G A CA14 Silent p.S284S 0.13 TCGA-D3-A1QB-06 1 152193185 152193185 G A HRNR Missense_Mutation p.P307L 0.28 unknown(0) TCGA-D3-A1QB-06 1 152275409 152275409 C T FLG Missense_Mutation p.D3985N 0.26 unknown(0) TCGA-D3-A1QB-06 1 154988095 154988095 C A ZBTB7B Missense_Mutation p.S354Y 0.20 tolerated(0.43) possibly_damaging(0.6) TCGA-D3-A1QB-06 1 155630502 155630502 G A YY1AP1 Missense_Mutation p.P538L 0.29 tolerated_low_confidence(0.68) benign(0.022) TCGA-D3-A1QB-06 1 155851322 155851322 C T SYT11 3'UTR 0.28 TCGA-D3-A1QB-06 1 157767989 157767989 G A FCRL1 Missense_Mutation p.S359L 0.12 deleterious(0.01) benign(0.321) TCGA-D3-A1QB-06 1 15808871 15808871 C T CELA2B Silent p.S113S 0.22 TCGA-D3-A1QB-06 1 158389769 158389769 C T OR10K2 Silent p.E296E 0.09 TCGA-D3-A1QB-06 1 158687706 158687706 G A OR6K3 Missense_Mutation p.S67F 0.24 deleterious(0) probably_damaging(0.98) TCGA-D3-A1QB-06 1 15870913 15870913 C T DNAJC16 Silent p.V198V 0.22 TCGA-D3-A1QB-06 1 160720137 160720137 C T SLAMF7 Silent p.L231L 0.33 TCGA-D3-A1QB-06 1 160832413 160832413 C T CD244 Missense_Mutation p.G19S 0.09 deleterious(0.04) benign(0.108) TCGA-D3-A1QB-06 1 160832414 160832414 C T CD244 Silent p.Q18Q 0.09 TCGA-D3-A1QB-06 1 16383395 16383395 C T CLCNKB Missense_Mutation p.P683L 0.33 deleterious(0) probably_damaging(0.986) TCGA-D3-A1QB-06 1 166896409 166896409 C T ILDR2 Missense_Mutation p.G297S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A1QB-06 1 167666945 167666945 C T RCSD1 Missense_Mutation p.P362S 0.20 tolerated(0.21) benign(0.015) TCGA-D3-A1QB-06 1 172522443 172522443 C T SUCO Missense_Mutation p.S74L 0.26 tolerated_low_confidence(0.35) benign(0.001) TCGA-D3-A1QB-06 1 174927048 174927048 T A RABGAP1L 3'UTR 0.30 TCGA-D3-A1QB-06 1 175097807 175097807 C T TNN Silent p.T1085T 0.28 TCGA-D3-A1QB-06 1 17609594 17609594 C T PADI3 3'UTR 0.22 TCGA-D3-A1QB-06 1 183711344 183711344 C T RGL1 Missense_Mutation p.L18F 0.29 tolerated_low_confidence(0.2) benign(0) TCGA-D3-A1QB-06 1 200978068 200978068 C T KIF21B Silent p.G92G 0.29 TCGA-D3-A1QB-06 1 201828048 201828048 T G IPO9 Missense_Mutation p.V465G 0.16 tolerated(0.18) benign(0.003) TCGA-D3-A1QB-06 1 202092519 202092519 T A GPR37L1 Missense_Mutation p.V143E 0.25 deleterious(0) probably_damaging(0.944) TCGA-D3-A1QB-06 1 203134704 203134704 C T ADORA1 Silent p.S219S 0.19 TCGA-D3-A1QB-06 1 204438313 204438313 C T PIK3C2B Silent p.R206R 0.29 TCGA-D3-A1QB-06 1 204938097 204938097 G A NFASC Silent p.S330S 0.14 TCGA-D3-A1QB-06 1 207110450 207110450 G A PIGR Silent p.F345F 0.26 TCGA-D3-A1QB-06 1 213244377 213244377 C T RPS6KC1 Silent p.V45V 0.13 TCGA-D3-A1QB-06 1 221058014 221058014 G A HLX Missense_Mutation p.E479K 0.31 deleterious_low_confidence(0.02) benign(0.277) TCGA-D3-A1QB-06 1 223905501 223905501 C T CAPN2 Missense_Mutation p.A92V 0.10 deleterious(0.04) benign(0.105) TCGA-D3-A1QB-06 1 224477257 224477257 C A NVL Nonsense_Mutation p.E502* 0.25 TCGA-D3-A1QB-06 1 227069743 227069743 C T PSEN2 Silent p.A45A 0.43 TCGA-D3-A1QB-06 1 230907770 230907770 G A CAPN9 Missense_Mutation p.R267Q 0.12 tolerated(0.27) benign(0.009) TCGA-D3-A1QB-06 1 233225933 233225933 G A PCNXL2 Missense_Mutation p.S1317F 0.22 deleterious(0) possibly_damaging(0.853) TCGA-D3-A1QB-06 1 236212199 236212199 G A NID1 Missense_Mutation p.P106S 0.26 deleterious(0.01) benign(0.371) TCGA-D3-A1QB-06 1 240071148 240071148 C T CHRM3 Nonsense_Mutation p.R133* 0.10 TCGA-D3-A1QB-06 1 240371059 240371059 G A FMN2 Missense_Mutation p.G983R 0.12 unknown(0) TCGA-D3-A1QB-06 1 248684993 248684993 G A OR2G6 Missense_Mutation p.G16R 0.25 deleterious(0) probably_damaging(0.995) TCGA-D3-A1QB-06 1 248845431 248845431 A C OR14I1 Missense_Mutation p.F59V 0.39 deleterious(0) probably_damaging(0.931) TCGA-D3-A1QB-06 1 26900900 26900900 G A RPS6KA1 3'Flank 0.18 TCGA-D3-A1QB-06 1 2938863 2938863 C T ACTRT2 Missense_Mutation p.P205S 0.12 tolerated(0.57) benign(0.113) TCGA-D3-A1QB-06 1 31188783 31188783 C T MATN1 Missense_Mutation p.D394N 0.16 deleterious(0.02) benign(0.11) TCGA-D3-A1QB-06 1 32263882 32263882 C T SPOCD1 Missense_Mutation p.D691N 0.12 tolerated(0.28) benign(0.141) TCGA-D3-A1QB-06 1 32620255 32620255 C T KPNA6 Missense_Mutation p.P24L 0.17 tolerated(0.13) benign(0.014) TCGA-D3-A1QB-06 1 40313247 40313247 C T TRIT1 Missense_Mutation p.E301K 0.19 tolerated(0.06) possibly_damaging(0.629) TCGA-D3-A1QB-06 1 43885494 43885494 C T SZT2 Silent p.S323S 0.26 TCGA-D3-A1QB-06 1 45965889 45965889 C T MMACHC 5'UTR 0.21 TCGA-D3-A1QB-06 1 47284520 47284520 C T CYP4B1 3'UTR 0.25 TCGA-D3-A1QB-06 1 53544333 53544333 C T PODN Missense_Mutation p.T432I 0.20 deleterious(0.04) possibly_damaging(0.749) TCGA-D3-A1QB-06 1 53553770 53553770 G A SLC1A7 Missense_Mutation p.P532S 0.27 deleterious_low_confidence(0.02) benign(0.017) TCGA-D3-A1QB-06 1 53925162 53925162 G A DMRTB1 Silent p.S12S 0.17 TCGA-D3-A1QB-06 1 55512226 55512226 G A PCSK9 Missense_Mutation p.E144K 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 1 57756713 57756713 C T DAB1 5'UTR 0.20 TCGA-D3-A1QB-06 1 65129383 65129383 C T CACHD1 Missense_Mutation p.P602S 0.16 tolerated(0.85) benign(0.002) TCGA-D3-A1QB-06 1 78249030 78249030 C T FAM73A Silent p.L63L 0.14 TCGA-D3-A1QB-06 1 79101127 79101127 G A IFI44L Missense_Mutation p.D277N 0.13 deleterious(0.04) possibly_damaging(0.885) TCGA-D3-A1QB-06 1 8420694 8420694 G A RERE Missense_Mutation p.S958F 0.18 unknown(0) TCGA-D3-A1QB-06 1 880950 880950 G A NOC2L Silent p.L667L 0.19 TCGA-D3-A1QB-06 1 89449031 89449031 G A RBMXL1 Missense_Mutation p.P160L 0.24 deleterious(0.02) possibly_damaging(0.887) TCGA-D3-A1QB-06 1 979730 979730 G A AGRN Missense_Mutation p.G722E 0.23 deleterious(0) probably_damaging(0.996) TCGA-D3-A1QB-06 20 23028831 23028831 G A THBD Silent p.F437F 0.18 TCGA-D3-A1QB-06 20 23420790 23420790 C T CSTL1 5'UTR 0.50 TCGA-D3-A1QB-06 20 23472280 23472280 G A CST8 5'UTR 0.20 TCGA-D3-A1QB-06 20 30530770 30530770 A G TTLL9 Silent p.K422K 0.23 TCGA-D3-A1QB-06 20 30672196 30672196 G A HCK Missense_Mutation p.G229R 0.22 tolerated(0.54) benign(0.05) TCGA-D3-A1QB-06 20 31573551 31573551 G A SUN5 Silent p.F296F 0.17 TCGA-D3-A1QB-06 20 52198100 52198100 A G ZNF217 Silent p.P422P 0.18 TCGA-D3-A1QB-06 20 9519993 9519993 C T PAK7 3'UTR 0.25 TCGA-D3-A1QB-06 21 11020833 11020833 G A BAGE2 3'Flank 0.09 TCGA-D3-A1QB-06 21 11038844 11038844 G A BAGE2 RNA 0.10 TCGA-D3-A1QB-06 21 19715897 19715897 A C TMPRSS15 Missense_Mutation p.F452V 0.19 deleterious(0) probably_damaging(0.985) TCGA-D3-A1QB-06 21 33060664 33060664 G A SCAF4 Missense_Mutation p.P667S 0.15 unknown(0) TCGA-D3-A1QB-06 21 35094928 35094928 T A ITSN1 Missense_Mutation p.L53I 0.21 deleterious(0) unknown(0) TCGA-D3-A1QB-06 21 38137355 38137355 G A HLCS Silent p.S546S 0.11 TCGA-D3-A1QB-06 21 40587164 40587164 T C BRWD1 Missense_Mutation p.K1262E 0.29 tolerated(0.11) possibly_damaging(0.525) TCGA-D3-A1QB-06 21 46101789 46101789 G A KRTAP12-1 Missense_Mutation p.L84F 0.16 deleterious(0.01) possibly_damaging(0.587) TCGA-D3-A1QB-06 22 17288712 17288712 G A XKR3 Silent p.I84I 0.13 TCGA-D3-A1QB-06 22 24574103 24574103 C T CABIN1 Missense_Mutation p.S2201F 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A1QB-06 22 26173699 26173699 C G MYO18B Silent p.V673V 0.19 TCGA-D3-A1QB-06 22 29726639 29726639 G A AP1B1 Nonsense_Mutation p.Q862* 0.21 TCGA-D3-A1QB-06 22 29966482 29966482 G A NIPSNAP1 Silent p.S46S 0.33 TCGA-D3-A1QB-06 22 31662023 31662023 C T LIMK2 Missense_Mutation p.R295C 0.24 deleterious(0.02) benign(0.246) TCGA-D3-A1QB-06 22 35943021 35943021 C T RASD2 Silent p.F55F 0.22 TCGA-D3-A1QB-06 22 36983516 36983516 G A CACNG2 Silent p.F97F 0.18 TCGA-D3-A1QB-06 22 37708184 37708184 G A CYTH4 Missense_Mutation p.E361K 0.25 deleterious(0.01) benign(0.03) TCGA-D3-A1QB-06 22 41223122 41223122 G A ST13 Missense_Mutation p.P320L 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 22 41979975 41979975 G A PMM1 Silent p.S154S 0.20 TCGA-D3-A1QB-06 22 41979976 41979976 G A PMM1 Missense_Mutation p.S154F 0.20 tolerated(0.7) benign(0.041) TCGA-D3-A1QB-06 22 44285393 44285393 T C PNPLA5 Missense_Mutation p.N173S 0.16 deleterious(0.02) benign(0.329) TCGA-D3-A1QB-06 22 46611088 46611088 C T PPARA Missense_Mutation p.S76L 0.17 deleterious_low_confidence(0.01) benign(0.21) TCGA-D3-A1QB-06 2 10098918 10098918 C T GRHL1 Missense_Mutation p.P71S 0.25 tolerated(0.07) possibly_damaging(0.637) TCGA-D3-A1QB-06 2 101023068 101023068 A G CHST10 Missense_Mutation p.F24L 0.22 tolerated_low_confidence(0.17) benign(0.022) TCGA-D3-A1QB-06 2 103281594 103281594 G A SLC9A2 Missense_Mutation p.M263I 0.23 deleterious(0.01) benign(0.376) TCGA-D3-A1QB-06 2 103299780 103299780 C T SLC9A2 Silent p.S355S 0.18 TCGA-D3-A1QB-06 2 108476283 108476283 A G RGPD4 Silent p.A580A 0.25 TCGA-D3-A1QB-06 2 108872049 108872049 C T SULT1C3 Missense_Mutation p.P141S 0.16 deleterious(0.01) benign(0.083) TCGA-D3-A1QB-06 2 113940401 113940401 G A PSD4 Missense_Mutation p.R123K 0.13 tolerated_low_confidence(0.25) benign(0.006) TCGA-D3-A1QB-06 2 114691884 114691884 C T ACTR3 Missense_Mutation p.T154I 0.18 deleterious(0.01) benign(0.131) TCGA-D3-A1QB-06 2 125261928 125261928 C T CNTNAP5 Silent p.S373S 0.22 TCGA-D3-A1QB-06 2 149247692 149247692 C T MBD5 Silent p.F1264F 0.23 TCGA-D3-A1QB-06 2 152520064 152520064 C T NEB Missense_Mutation p.D1921N 0.12 benign(0.213) TCGA-D3-A1QB-06 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.27 possibly_damaging(0.856) TCGA-D3-A1QB-06 2 169801162 169801162 C T ABCB11 Missense_Mutation p.G855R 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QB-06 2 169842630 169842630 G A ABCB11 Missense_Mutation p.T358I 0.44 tolerated(0.06) benign(0.049) TCGA-D3-A1QB-06 2 179395249 179395249 C T TTN Missense_Mutation p.G35365S 0.19 TCGA-D3-A1QB-06 2 179472297 179472297 C T TTN Nonsense_Mutation p.W17706* 0.20 TCGA-D3-A1QB-06 2 179577973 179577973 C T TTN Missense_Mutation p.G8963E 0.20 TCGA-D3-A1QB-06 2 185802259 185802259 G A ZNF804A Silent p.G712G 0.23 TCGA-D3-A1QB-06 2 200801132 200801132 T C TYW5 Silent p.L190L 0.32 TCGA-D3-A1QB-06 2 208725947 208725947 T C PLEKHM3 Missense_Mutation p.I664V 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A1QB-06 2 208989071 208989071 A G CRYGD Missense_Mutation p.L6P 0.24 deleterious(0) probably_damaging(0.932) TCGA-D3-A1QB-06 2 212522512 212522512 C T ERBB4 Nonsense_Mutation p.W638* 0.16 TCGA-D3-A1QB-06 2 227895314 227895314 C T COL4A4 Missense_Mutation p.G1273E 0.23 unknown(0) TCGA-D3-A1QB-06 2 227896735 227896735 C T COL4A4 Missense_Mutation p.G1248E 0.20 unknown(0) TCGA-D3-A1QB-06 2 228681022 228681022 G A CCL20 Splice_Site p.X64_splice 0.21 TCGA-D3-A1QB-06 2 234847806 234847806 C T TRPM8 Silent p.I171I 0.20 TCGA-D3-A1QB-06 2 234915547 234915547 G A TRPM8 Missense_Mutation p.E1061K 0.37 deleterious(0) probably_damaging(0.989) TCGA-D3-A1QB-06 2 238287836 238287836 G A COL6A3 Missense_Mutation p.S647L 0.20 probably_damaging(1) TCGA-D3-A1QB-06 2 31562483 31562483 G A XDH Missense_Mutation p.P1216S 0.15 deleterious(0.02) probably_damaging(0.948) TCGA-D3-A1QB-06 2 65540935 65540935 C T SPRED2 Silent p.E319E 0.22 TCGA-D3-A1QB-06 2 99787972 99787972 C A MITD1 Splice_Site p.X130_splice 0.22 TCGA-D3-A1QB-06 3 111312682 111312682 C T ZBED2 Missense_Mutation p.D123N 0.24 tolerated(0.28) benign(0.003) TCGA-D3-A1QB-06 3 119458102 119458102 G A MAATS1 Missense_Mutation p.E488K 0.19 tolerated(0.16) benign(0.251) TCGA-D3-A1QB-06 3 119886817 119886817 C T GPR156 Missense_Mutation p.D503N 0.26 tolerated(0.24) benign(0.002) TCGA-D3-A1QB-06 3 121417610 121417610 C T GOLGB1 Missense_Mutation p.G587E 0.11 possibly_damaging(0.786) TCGA-D3-A1QB-06 3 122964853 122964853 C T SEC22A Missense_Mutation p.L217F 0.17 tolerated(0.13) benign(0.009) TCGA-D3-A1QB-06 3 123005552 123005552 C T ADCY5 Missense_Mutation p.G1213S 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 3 124540214 124540214 G A ITGB5 Silent p.H296H 0.21 TCGA-D3-A1QB-06 3 124540215 124540215 T A ITGB5 Missense_Mutation p.H296L 0.18 deleterious(0) probably_damaging(0.978) TCGA-D3-A1QB-06 3 128182133 128182133 G A DNAJB8 5'UTR 0.12 TCGA-D3-A1QB-06 3 128706457 128706457 A C KIAA1257 Splice_Site p.X223_splice 0.15 TCGA-D3-A1QB-06 3 13360633 13360633 G A NUP210 Silent p.P1834P 0.26 TCGA-D3-A1QB-06 3 160786642 160786642 C T PPM1L Silent p.I260I 0.34 TCGA-D3-A1QB-06 3 167023544 167023544 C T ZBBX Missense_Mutation p.E538K 0.10 tolerated(0.2) benign(0.066) TCGA-D3-A1QB-06 3 169578434 169578434 G A LRRC31 Silent p.I134I 0.19 TCGA-D3-A1QB-06 3 171321003 171321003 G A PLD1 Silent p.P1030P 0.22 TCGA-D3-A1QB-06 3 171321004 171321004 G T PLD1 Missense_Mutation p.P1030H 0.22 deleterious(0) benign(0.041) TCGA-D3-A1QB-06 3 194080933 194080933 G A LRRC15 Silent p.S286S 0.19 TCGA-D3-A1QB-06 3 194373738 194373738 G A LSG1 Missense_Mutation p.P298L 0.19 tolerated(0.36) benign(0) TCGA-D3-A1QB-06 3 194392918 194392918 C T LSG1 5'UTR 0.25 TCGA-D3-A1QB-06 3 38753839 38753839 T G SCN10A Missense_Mutation p.N1301T 0.24 deleterious(0.02) possibly_damaging(0.734) TCGA-D3-A1QB-06 3 45077096 45077096 G A CLEC3B Missense_Mutation p.D97N 0.11 tolerated(0.06) benign(0.062) TCGA-D3-A1QB-06 3 45134979 45134979 C T CDCP1 Missense_Mutation p.E473K 0.32 tolerated(0.06) possibly_damaging(0.837) TCGA-D3-A1QB-06 3 46399721 46399721 G A CCR2 Missense_Mutation p.E235K 0.19 deleterious(0.01) benign(0.198) TCGA-D3-A1QB-06 3 46542110 46542110 C T RTP3 Silent p.I140I 0.20 TCGA-D3-A1QB-06 3 48226167 48226167 G A CDC25A Missense_Mutation p.P89L 0.15 deleterious(0.01) possibly_damaging(0.766) TCGA-D3-A1QB-06 3 49020677 49020677 C T ARIH2 Silent p.L486L 0.17 TCGA-D3-A1QB-06 3 51751697 51751697 C T GRM2 Silent p.S803S 0.16 TCGA-D3-A1QB-06 3 51863708 51863708 G A IQCF3 Missense_Mutation p.E16K 0.26 deleterious(0.05) benign(0.043) TCGA-D3-A1QB-06 3 52324385 52324385 C T GLYCTK Silent p.P9P 0.15 TCGA-D3-A1QB-06 3 52818369 52818369 T G ITIH1 Missense_Mutation p.F428C 0.16 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A1QB-06 3 58849239 58849239 G A C3orf67 Intron 0.29 TCGA-D3-A1QB-06 3 69088085 69088085 G A TMF1 Nonsense_Mutation p.Q635* 0.18 TCGA-D3-A1QB-06 4 119952972 119952972 C T SYNPO2 Silent p.A1014A 0.11 TCGA-D3-A1QB-06 4 122722486 122722486 C T EXOSC9 5'UTR 0.26 TCGA-D3-A1QB-06 4 126408537 126408537 G A FAT4 Missense_Mutation p.G4285E 0.27 probably_damaging(0.97) TCGA-D3-A1QB-06 4 138449647 138449647 C T PCDH18 Missense_Mutation p.G909R 0.22 deleterious(0.03) possibly_damaging(0.736) TCGA-D3-A1QB-06 4 147796069 147796069 C T TTC29 Missense_Mutation p.E200K 0.35 tolerated(0.94) benign(0.042) TCGA-D3-A1QB-06 4 185646136 185646136 G C CENPU Missense_Mutation p.P99A 0.19 tolerated(0.07) benign(0.175) TCGA-D3-A1QB-06 4 186296788 186296788 C T LRP2BP Silent p.G103G 0.20 TCGA-D3-A1QB-06 4 186380657 186380657 G A CCDC110 Missense_Mutation p.P362S 0.22 tolerated(0.18) possibly_damaging(0.534) TCGA-D3-A1QB-06 4 20852279 20852279 C T KCNIP4 Missense_Mutation p.D59N 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A1QB-06 4 6066654 6066654 C T JAKMIP1 Missense_Mutation p.D462N 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 4 70823381 70823381 G A CSN2 Missense_Mutation p.P96S 0.21 tolerated(0.17) possibly_damaging(0.857) TCGA-D3-A1QB-06 4 88903719 88903719 C T SPP1 Missense_Mutation p.P206S 0.11 tolerated(0.45) probably_damaging(0.973) TCGA-D3-A1QB-06 4 90169566 90169566 G A GPRIN3 Missense_Mutation p.P566S 0.18 tolerated(0.08) probably_damaging(1) TCGA-D3-A1QB-06 5 130726846 130726846 C T CDC42SE2 3'UTR 0.27 TCGA-D3-A1QB-06 5 130726847 130726847 C T CDC42SE2 3'UTR 0.27 TCGA-D3-A1QB-06 5 131290046 131290046 G A ACSL6 Missense_Mutation p.H684Y 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A1QB-06 5 135283141 135283141 C T LECT2 Missense_Mutation p.G112D 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 5 13700912 13700912 C T DNAH5 Nonsense_Mutation p.W4520* 0.23 TCGA-D3-A1QB-06 5 13811926 13811926 G A DNAH5 Missense_Mutation p.L2413F 0.11 possibly_damaging(0.587) TCGA-D3-A1QB-06 5 13824350 13824350 C T DNAH5 Silent p.T2179T 0.23 TCGA-D3-A1QB-06 5 13841988 13841988 G A DNAH5 Missense_Mutation p.S1766F 0.20 possibly_damaging(0.788) TCGA-D3-A1QB-06 5 140348656 140348656 C T PCDHAC2 Missense_Mutation p.P769S 0.19 tolerated(0.63) probably_damaging(0.94) TCGA-D3-A1QB-06 5 140432608 140432608 G A PCDHB1 Missense_Mutation p.R518K 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A1QB-06 5 140531209 140531209 C T PCDHB6 Silent p.F457F 0.22 TCGA-D3-A1QB-06 5 140594277 140594277 G A PCDHB13 Silent p.E194E 0.14 TCGA-D3-A1QB-06 5 140711008 140711008 G A PCDHGA1 Missense_Mutation p.E253K 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A1QB-06 5 140807612 140807612 C T PCDHGB6 Intron 0.23 TCGA-D3-A1QB-06 5 141233812 141233812 C T PCDH1 Missense_Mutation p.G1170D 0.27 deleterious(0.01) possibly_damaging(0.768) TCGA-D3-A1QB-06 5 153149862 153149862 G A GRIA1 Silent p.E729E 0.26 TCGA-D3-A1QB-06 5 169506118 169506118 G A DOCK2 Missense_Mutation p.E1712K 0.25 tolerated_low_confidence(0.19) possibly_damaging(0.872) TCGA-D3-A1QB-06 5 35910583 35910583 C T CAPSL Missense_Mutation p.G67E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 5 35991284 35991284 G A UGT3A1 Missense_Mutation p.S20L 0.15 tolerated(0.23) probably_damaging(0.961) TCGA-D3-A1QB-06 5 45396729 45396729 G A HCN1 Silent p.A365A 0.15 TCGA-D3-A1QB-06 5 5463331 5463331 C T KIAA0947 Missense_Mutation p.T1295I 0.31 deleterious(0) possibly_damaging(0.804) TCGA-D3-A1QB-06 5 64447612 64447612 G A ADAMTS6 3'UTR 0.22 TCGA-D3-A1QB-06 5 76259220 76259220 G A CRHBP Missense_Mutation p.G249E 0.18 deleterious(0) probably_damaging(0.995) TCGA-D3-A1QB-06 5 90281229 90281229 C T GPR98 Silent p.F6014F 0.21 TCGA-D3-A1QB-06 6 110083360 110083360 C T FIG4 Silent p.F446F 0.21 TCGA-D3-A1QB-06 6 12122788 12122788 T G HIVEP1 Missense_Mutation p.D920E 0.22 tolerated(0.23) benign(0.043) TCGA-D3-A1QB-06 6 130413953 130413953 C T L3MBTL3 Missense_Mutation p.H528Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A1QB-06 6 130476170 130476170 C T SAMD3 Missense_Mutation p.E275K 0.12 tolerated(0.08) benign(0.009) TCGA-D3-A1QB-06 6 132645187 132645187 C T MOXD1 Silent p.R332R 0.21 TCGA-D3-A1QB-06 6 136693694 136693694 A C MAP7 Missense_Mutation p.L296R 0.23 deleterious(0.02) probably_damaging(0.947) TCGA-D3-A1QB-06 6 138655749 138655749 G A KIAA1244 Silent p.L1922L 0.09 TCGA-D3-A1QB-06 6 143093854 143093854 G A HIVEP2 Silent p.F674F 0.21 TCGA-D3-A1QB-06 6 150690080 150690080 C T IYD 5'UTR 0.23 TCGA-D3-A1QB-06 6 158066807 158066807 C T ZDHHC14 Missense_Mutation p.S264F 0.10 deleterious(0) possibly_damaging(0.781) TCGA-D3-A1QB-06 6 161173248 161173248 G A PLG Missense_Mutation p.E743K 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A1QB-06 6 167754956 167754956 C T TTLL2 Missense_Mutation p.P523L 0.28 tolerated(0.27) benign(0.005) TCGA-D3-A1QB-06 6 20124763 20124763 G A MBOAT1 Silent p.T261T 0.16 TCGA-D3-A1QB-06 6 20483065 20483065 C T E2F3 Silent p.L266L 0.17 TCGA-D3-A1QB-06 6 29141611 29141611 C T OR2J2 Missense_Mutation p.L67F 0.05 deleterious(0) probably_damaging(0.983) TCGA-D3-A1QB-06 6 31084629 31084629 C T CDSN Missense_Mutation p.V255M 0.22 deleterious_low_confidence(0) unknown(0) TCGA-D3-A1QB-06 6 31593278 31593278 G T PRRC2A Nonsense_Mutation p.E217* 0.14 TCGA-D3-A1QB-06 6 31929757 31929757 C T SKIV2L Silent p.V330V 0.36 TCGA-D3-A1QB-06 6 33136330 33136330 C T COL11A2 Missense_Mutation p.G1223E 0.09 unknown(0) TCGA-D3-A1QB-06 6 41318504 41318504 C T NCR2 Missense_Mutation p.P245S 0.18 deleterious_low_confidence(0.05) benign(0.064) TCGA-D3-A1QB-06 6 41318505 41318505 C T NCR2 Missense_Mutation p.P245L 0.18 tolerated_low_confidence(1) benign(0) TCGA-D3-A1QB-06 6 43153909 43153909 C T CUL9 Missense_Mutation p.L323F 0.12 tolerated(0.71) benign(0.434) TCGA-D3-A1QB-06 6 43153911 43153911 C T CUL9 Silent p.L323L 0.12 TCGA-D3-A1QB-06 6 43273420 43273420 G A CRIP3 3'UTR 0.29 TCGA-D3-A1QB-06 6 44217789 44217789 C A HSP90AB1 Silent p.I182I 0.17 TCGA-D3-A1QB-06 6 46977388 46977388 T C GPR110 Missense_Mutation p.I595V 0.34 tolerated(0.23) benign(0.036) TCGA-D3-A1QB-06 6 63995556 63995556 C T LGSN Missense_Mutation p.R89Q 0.33 deleterious(0.04) possibly_damaging(0.684) TCGA-D3-A1QB-06 6 7247273 7247273 C T RREB1 Silent p.S1530S 0.21 TCGA-D3-A1QB-06 6 88773912 88773912 T C SPACA1 Silent p.L236L 0.29 TCGA-D3-A1QB-06 6 99849093 99849093 T A PNISR Nonsense_Mutation p.K581* 0.19 TCGA-D3-A1QB-06 7 100179450 100179450 G A LRCH4 Missense_Mutation p.S183F 0.22 tolerated(0.18) possibly_damaging(0.882) TCGA-D3-A1QB-06 7 100552193 100552193 C T MUC3A Missense_Mutation p.S315F 0.07 deleterious(0.04) probably_damaging(0.969) TCGA-D3-A1QB-06 7 100677647 100677647 C T MUC17 Missense_Mutation p.P984S 0.20 probably_damaging(0.993) TCGA-D3-A1QB-06 7 100694923 100694923 C T MUC17 Nonsense_Mutation p.Q4302* 0.18 TCGA-D3-A1QB-06 7 103202103 103202103 G A RELN Missense_Mutation p.S1802L 0.20 deleterious(0.04) benign(0.422) TCGA-D3-A1QB-06 7 107423747 107423747 C T SLC26A3 Missense_Mutation p.G341E 0.21 tolerated(0.72) probably_damaging(0.939) TCGA-D3-A1QB-06 7 128312484 128312484 C T FAM71F2 Silent p.V11V 0.19 TCGA-D3-A1QB-06 7 128480651 128480651 C T FLNC Silent p.F533F 0.19 TCGA-D3-A1QB-06 7 139810919 139810919 A G KDM7A Silent p.L468L 0.18 TCGA-D3-A1QB-06 7 139827337 139827337 G T KDM7A Missense_Mutation p.D202E 0.20 deleterious(0) benign(0.408) TCGA-D3-A1QB-06 7 141464243 141464243 G A TAS2R3 Silent p.L95L 0.23 TCGA-D3-A1QB-06 7 142572879 142572879 G A TRPV6 Silent p.V387V 0.21 TCGA-D3-A1QB-06 7 142724010 142724010 G A OR9A2 Silent p.I70I 0.20 TCGA-D3-A1QB-06 7 143956659 143956659 C T OR2A7 Silent p.R21R 0.11 TCGA-D3-A1QB-06 7 1484390 1484390 G A MICALL2 Missense_Mutation p.P439L 0.15 deleterious(0.05) benign(0.023) TCGA-D3-A1QB-06 7 1484391 1484391 G A MICALL2 Missense_Mutation p.P439S 0.11 tolerated(0.38) benign(0.001) TCGA-D3-A1QB-06 7 150690882 150690882 G C NOS3 5'UTR 0.20 TCGA-D3-A1QB-06 7 154564580 154564580 C T DPP6 Missense_Mutation p.S355F 0.18 tolerated(0.09) possibly_damaging(0.81) TCGA-D3-A1QB-06 7 158715154 158715154 C T WDR60 Missense_Mutation p.P670S 0.19 tolerated(0.74) benign(0.005) TCGA-D3-A1QB-06 7 16918164 16918164 C T AGR3 Missense_Mutation p.E27K 0.25 tolerated(0.71) benign(0.004) TCGA-D3-A1QB-06 7 30692948 30692948 C T CRHR2 3'UTR 0.30 TCGA-D3-A1QB-06 7 41729230 41729230 C T INHBA 3'UTR 0.13 TCGA-D3-A1QB-06 7 47840383 47840383 A T PKD1L1 Missense_Mutation p.F2686Y 0.16 tolerated(0.55) possibly_damaging(0.701) TCGA-D3-A1QB-06 7 49951843 49951843 G A VWC2 3'UTR 0.20 TCGA-D3-A1QB-06 7 75401322 75401322 C T CCL26 Splice_Site p.X25_splice 0.18 TCGA-D3-A1QB-06 7 92098746 92098746 C T ERVW-1 Missense_Mutation p.R317K 0.18 tolerated(0.2) possibly_damaging(0.872) TCGA-D3-A1QB-06 8 114031299 114031299 G A CSMD3 Nonsense_Mutation p.Q343* 0.12 TCGA-D3-A1QB-06 8 123964360 123964360 G A ZHX2 Missense_Mutation p.E204K 0.11 tolerated(0.42) benign(0.185) TCGA-D3-A1QB-06 8 124696873 124696873 G A ANXA13 Missense_Mutation p.R311C 0.09 deleterious(0) possibly_damaging(0.873) TCGA-D3-A1QB-06 8 124797968 124797968 G A FAM91A1 Missense_Mutation p.V317I 0.15 tolerated(0.57) benign(0.003) TCGA-D3-A1QB-06 8 125551402 125551402 C T NDUFB9 5'UTR 0.58 TCGA-D3-A1QB-06 8 128752989 128752989 G A MYC Missense_Mutation p.E384K 0.51 deleterious(0.01) possibly_damaging(0.547) TCGA-D3-A1QB-06 8 133816952 133816952 C T PHF20L1 Nonsense_Mutation p.Q272* 0.16 TCGA-D3-A1QB-06 8 133885333 133885333 C T TG Missense_Mutation p.R169C 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A1QB-06 8 144130680 144130680 G A C8orf31 3'UTR 0.21 TCGA-D3-A1QB-06 8 16026295 16026295 C T MSR1 Missense_Mutation p.G101E 0.21 tolerated(0.41) benign(0.018) TCGA-D3-A1QB-06 8 16026296 16026296 C T MSR1 Missense_Mutation p.G101R 0.20 tolerated(0.2) benign(0.027) TCGA-D3-A1QB-06 8 21955654 21955654 G A FAM160B2 Missense_Mutation p.D201N 0.50 tolerated(0.25) benign(0.008) TCGA-D3-A1QB-06 8 23708887 23708887 C T STC1 Missense_Mutation p.R140Q 0.14 tolerated(0.41) benign(0.008) TCGA-D3-A1QB-06 8 26366363 26366363 G A PNMA2 5'UTR 0.24 TCGA-D3-A1QB-06 8 27295362 27295362 C T PTK2B Silent p.A536A 0.25 TCGA-D3-A1QB-06 8 32505269 32505269 C T NRG1 Intron 0.19 TCGA-D3-A1QB-06 8 33454954 33454954 C T DUSP26 Missense_Mutation p.R27Q 0.26 tolerated(0.29) benign(0.14) TCGA-D3-A1QB-06 8 39781071 39781071 G A IDO1 Silent p.L207L 0.18 TCGA-D3-A1QB-06 8 48805886 48805886 G A PRKDC Silent p.L1220L 0.10 TCGA-D3-A1QB-06 8 62566152 62566152 G A ASPH Silent p.P130P 0.44 TCGA-D3-A1QB-06 8 68115390 68115390 A G ARFGEF1 Silent p.L1686L 0.46 TCGA-D3-A1QB-06 8 75276235 75276235 C T GDAP1 Missense_Mutation p.P237L 0.52 tolerated(1) benign(0.341) TCGA-D3-A1QB-06 8 88249305 88249305 C T CNBD1 Missense_Mutation p.L246F 0.13 tolerated(0.42) benign(0.015) TCGA-D3-A1QB-06 8 94809639 94809639 C T TMEM67 Nonsense_Mutation p.Q681* 0.12 TCGA-D3-A1QB-06 8 98703286 98703286 C T MTDH Silent p.S306S 0.11 TCGA-D3-A1QB-06 9 100857227 100857227 C G TRIM14 Missense_Mutation p.V208L 0.24 tolerated(0.3) benign(0.006) TCGA-D3-A1QB-06 9 104079699 104079699 C T LPPR1 Missense_Mutation p.P289L 0.19 tolerated(0.88) benign(0.001) TCGA-D3-A1QB-06 9 107331456 107331456 G A OR13C8 Missense_Mutation p.R3K 0.08 tolerated(1) benign(0.001) TCGA-D3-A1QB-06 9 107331457 107331457 G A OR13C8 Silent p.R3R 0.08 TCGA-D3-A1QB-06 9 107361512 107361512 G A OR13C5 Silent p.F61F 0.18 TCGA-D3-A1QB-06 9 119124940 119124940 G A PAPPA Missense_Mutation p.E1473K 0.24 tolerated(0.32) benign(0.292) TCGA-D3-A1QB-06 9 125148726 125148726 G A PTGS1 Silent p.G337G 0.21 TCGA-D3-A1QB-06 9 125154661 125154661 G A PTGS1 Silent p.P546P 0.18 TCGA-D3-A1QB-06 9 130605473 130605473 C T ENG Missense_Mutation p.G40D 0.26 tolerated(0.07) possibly_damaging(0.86) TCGA-D3-A1QB-06 9 131802822 131802822 C T FAM73B 5'UTR 0.23 TCGA-D3-A1QB-06 9 133960930 133960930 C T LAMC3 Silent p.P1350P 0.16 TCGA-D3-A1QB-06 9 134471703 134471703 T A RAPGEF1 Missense_Mutation p.T723S 0.24 tolerated(0.16) probably_damaging(0.986) TCGA-D3-A1QB-06 9 134471706 134471706 C A RAPGEF1 Missense_Mutation p.A722S 0.26 deleterious(0) possibly_damaging(0.906) TCGA-D3-A1QB-06 9 135785946 135785957 GCTGGATCGCAC - TSC1 Splice_Site p.X421_splice 0.17 TCGA-D3-A1QB-06 9 135946651 135946651 T G CEL Missense_Mutation p.S591A 0.09 deleterious(0.03) benign(0.058) TCGA-D3-A1QB-06 9 135946657 135946657 G C CEL Missense_Mutation p.A593P 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.735) TCGA-D3-A1QB-06 9 138678108 138678108 C T KCNT1 Silent p.S1081S 0.34 TCGA-D3-A1QB-06 9 140444763 140444763 A G PNPLA7 5'UTR 0.30 TCGA-D3-A1QB-06 9 14722533 14722533 G A CER1 Silent p.N46N 0.16 TCGA-D3-A1QB-06 9 18657708 18657708 G A ADAMTSL1 Silent p.R302R 0.13 TCGA-D3-A1QB-06 9 21216974 21216974 C T IFNA16 Missense_Mutation p.E111K 0.21 deleterious(0.01) possibly_damaging(0.451) TCGA-D3-A1QB-06 9 35558458 35558458 G A RUSC2 Splice_Site p.X1079_splice 0.15 TCGA-D3-A1QB-06 9 35561359 35561359 C T RUSC2 Missense_Mutation p.P1511S 0.12 tolerated_low_confidence(0.51) unknown(0) TCGA-D3-A1QB-06 9 35675789 35675789 C T CA9 Silent p.A155A 0.27 TCGA-D3-A1QB-06 9 79922920 79922920 G T VPS13A Missense_Mutation p.W1340C 0.26 tolerated(0.11) benign(0.002) TCGA-D3-A1QB-06 9 91994420 91994420 G A SEMA4D Silent p.A596A 0.22 TCGA-D3-A1QB-06 9 97321422 97321422 G A FBP2 Intron 0.24 TCGA-D3-A1QB-06 X 107868998 107868998 G A COL4A5 Missense_Mutation p.G1027E 0.38 unknown(0) TCGA-D3-A1QB-06 X 115304184 115304184 C T AGTR2 Silent p.I217I 0.29 TCGA-D3-A1QB-06 X 119293172 119293172 G A RHOXF2 Missense_Mutation p.E111K 0.35 tolerated(0.41) benign(0.11) TCGA-D3-A1QB-06 X 123615660 123615660 C T TENM1 Missense_Mutation p.D1291N 0.27 deleterious(0) benign(0.007) TCGA-D3-A1QB-06 X 140993302 140993302 C T MAGEC1 Missense_Mutation p.P38S 0.19 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-D3-A1QB-06 X 140996335 140996335 G A MAGEC1 Missense_Mutation p.V1049M 0.17 deleterious(0) unknown(0) TCGA-D3-A1QB-06 X 153696528 153696528 C T PLXNA3 Silent p.F1308F 0.34 TCGA-D3-A1QB-06 X 50659247 50659247 A G BMP15 Silent p.S273S 0.19 TCGA-D3-A1QB-06 X 53617393 53617393 G A HUWE1 Missense_Mutation p.P1388S 0.28 benign(0.011) TCGA-D3-A1QB-06 X 55247081 55247081 G A PAGE5 Missense_Mutation p.E17K 0.36 tolerated_low_confidence(0.37) benign(0.001) TCGA-D3-A1QB-06 X 84622723 84622723 G A POF1B Silent p.L111L 0.25 TCGA-D3-A2J6-06 10 55996590 55996590 G A PCDH15 Silent p.I326I 0.31 TCGA-D3-A2J6-06 11 118779312 118779312 G A BCL9L Missense_Mutation p.R27C 0.29 benign(0) TCGA-D3-A2J6-06 16 18848644 18848644 A G SMG1 Missense_Mutation p.L2512P 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2J6-06 16 27665958 27665958 C T KIAA0556 Intron 0.35 TCGA-D3-A2J6-06 16 29998438 29998438 C T TAOK2 Missense_Mutation p.H949Y 0.34 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-D3-A2J6-06 17 58235086 58235086 G A CA4 Silent p.S150S 0.82 TCGA-D3-A2J6-06 19 18960966 18960966 G T UPF1 Nonsense_Mutation p.E182* 0.35 TCGA-D3-A2J6-06 19 43243060 43243060 G A PSG3 Silent p.Y82Y 0.38 TCGA-D3-A2J6-06 19 47991567 47991567 C T NAPA Missense_Mutation p.G289D 0.40 tolerated(0.2) benign(0.012) TCGA-D3-A2J6-06 19 55179198 55179198 A G LILRB4 Missense_Mutation p.D385G 0.14 deleterious(0.01) benign(0.29) TCGA-D3-A2J6-06 1 207287557 207287557 C T C4BPA Silent p.Y85Y 0.25 TCGA-D3-A2J6-06 1 223567523 223567523 C T C1orf65 Missense_Mutation p.R236W 0.13 deleterious(0.01) possibly_damaging(0.627) TCGA-D3-A2J6-06 1 237732504 237732504 C T RYR2 Silent p.V1161V 0.25 TCGA-D3-A2J6-06 1 3328709 3328709 G A PRDM16 Missense_Mutation p.G650R 0.86 tolerated(0.5) benign(0.342) TCGA-D3-A2J6-06 20 49195776 49195776 G T PTPN1 Missense_Mutation p.M258I 0.22 deleterious(0) possibly_damaging(0.827) TCGA-D3-A2J6-06 22 19504139 19504139 C A CDC45 Silent p.P542P 0.09 TCGA-D3-A2J6-06 2 107073516 107073516 T C RGPD3 Missense_Mutation p.K106E 0.34 tolerated(0.46) benign(0.026) TCGA-D3-A2J6-06 2 242066278 242066278 C T PASK Silent p.P684P 0.33 TCGA-D3-A2J6-06 3 44692709 44692709 G A ZNF35 Silent p.Q50Q 0.38 TCGA-D3-A2J6-06 5 145533506 145533506 G A LARS Missense_Mutation p.S368L 0.36 tolerated(0.83) benign(0.003) TCGA-D3-A2J6-06 5 78671906 78671906 C T HOMER1 Missense_Mutation p.E331K 0.33 deleterious(0) benign(0.119) TCGA-D3-A2J6-06 6 126211073 126211073 A G NCOA7 Missense_Mutation p.N625D 0.68 tolerated(0.08) benign(0.002) TCGA-D3-A2J6-06 6 31084467 31084467 G A CDSN Missense_Mutation p.P309S 0.76 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2J6-06 6 64394879 64394879 C T PHF3 Missense_Mutation p.S419L 0.35 deleterious_low_confidence(0.03) benign(0.002) TCGA-D3-A2J6-06 8 146067043 146067043 T C ZNF7 Missense_Mutation p.L184P 0.21 tolerated(0.28) benign(0.001) TCGA-D3-A2J6-06 X 153774257 153774257 A C G6PD Silent p.G68G 0.21 TCGA-D3-A2J7-06 10 105218494 105218494 G A CALHM1 Silent p.F5F 0.15 TCGA-D3-A2J7-06 10 106152024 106152024 G A CCDC147 Missense_Mutation p.E467K 0.24 deleterious(0.01) possibly_damaging(0.615) TCGA-D3-A2J7-06 10 117221540 117221540 G A ATRNL1 Missense_Mutation p.E1138K 0.14 tolerated(0.25) possibly_damaging(0.888) TCGA-D3-A2J7-06 10 123844641 123844641 C T TACC2 Missense_Mutation p.H876Y 0.26 benign(0.418) TCGA-D3-A2J7-06 10 125434339 125434339 G A GPR26 Missense_Mutation p.R225Q 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A2J7-06 10 129906764 129906764 G A MKI67 Missense_Mutation p.P1114S 0.24 tolerated(0.58) benign(0.03) TCGA-D3-A2J7-06 10 135098965 135098965 G A TUBGCP2 Silent p.I658I 0.20 TCGA-D3-A2J7-06 10 17026170 17026170 G A CUBN Nonsense_Mutation p.R1487* 0.15 TCGA-D3-A2J7-06 10 24834786 24834786 G A KIAA1217 Missense_Mutation p.D1789N 0.16 tolerated(0.09) possibly_damaging(0.836) TCGA-D3-A2J7-06 10 28408587 28408587 C T MPP7 Silent p.R315R 0.22 TCGA-D3-A2J7-06 10 33196015 33196015 T A ITGB1 Intron 0.17 TCGA-D3-A2J7-06 10 44880421 44880421 G A CXCL12 Silent p.L11L 0.29 TCGA-D3-A2J7-06 10 50833529 50833529 C T CHAT Missense_Mutation p.P255S 0.23 deleterious(0) probably_damaging(0.979) TCGA-D3-A2J7-06 10 55569273 55569273 C T PCDH15 Missense_Mutation p.E447K 0.15 tolerated_low_confidence(0.19) unknown(0) TCGA-D3-A2J7-06 10 5791587 5791587 C T FAM208B Missense_Mutation p.S2068F 0.19 tolerated(0.55) benign(0.003) TCGA-D3-A2J7-06 10 60549603 60549603 C T BICC1 Silent p.H319H 0.13 TCGA-D3-A2J7-06 10 61829367 61829367 C T ANK3 Missense_Mutation p.E3758K 0.15 probably_damaging(0.956) TCGA-D3-A2J7-06 10 71103614 71103614 C T HK1 Missense_Mutation p.S36F 0.18 deleterious(0) probably_damaging(0.992) TCGA-D3-A2J7-06 10 73058914 73058914 C T UNC5B Silent p.I906I 0.27 TCGA-D3-A2J7-06 10 88696470 88696470 C T MMRN2 3'UTR 0.30 TCGA-D3-A2J7-06 10 95399866 95399866 G A PDE6C Missense_Mutation p.E508K 0.24 tolerated(0.21) benign(0.288) TCGA-D3-A2J7-06 10 96829107 96829107 G A CYP2C8 Missense_Mutation p.S18L 0.12 tolerated(0.26) benign(0.049) TCGA-D3-A2J7-06 10 99332524 99332524 C T ANKRD2 Silent p.A20A 0.36 TCGA-D3-A2J7-06 11 124180125 124180125 C T OR8D1 Missense_Mutation p.D180N 0.20 deleterious(0) probably_damaging(0.984) TCGA-D3-A2J7-06 11 128782088 128782088 G A KCNJ5 Missense_Mutation p.G307E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 11 20414469 20414469 C T PRMT3 Silent p.S108S 0.20 TCGA-D3-A2J7-06 11 24998158 24998158 G A LUZP2 Missense_Mutation p.E182K 0.34 deleterious(0) probably_damaging(0.987) TCGA-D3-A2J7-06 11 40137440 40137440 G A LRRC4C Missense_Mutation p.R135C 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 11 46900680 46900680 G A LRP4 Missense_Mutation p.P1001S 0.11 tolerated(0.76) benign(0.001) TCGA-D3-A2J7-06 11 46900681 46900681 G A LRP4 Silent p.P1000P 0.10 TCGA-D3-A2J7-06 11 55038469 55038469 G A TRIM48 3'UTR 0.19 TCGA-D3-A2J7-06 11 55659158 55659158 C T TRIM51 3'UTR 0.26 TCGA-D3-A2J7-06 11 55798066 55798066 C T OR5AS1 Missense_Mutation p.P58S 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2J7-06 11 55999895 55999895 G A OR5T2 Missense_Mutation p.S256F 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J7-06 11 57506652 57506652 C T TMX2 Silent p.L222L 0.26 TCGA-D3-A2J7-06 11 57947716 57947716 C T OR9Q1 Missense_Mutation p.S267L 0.14 tolerated(1) benign(0.012) TCGA-D3-A2J7-06 11 60105367 60105367 G A MS4A6E Missense_Mutation p.D101N 0.25 tolerated(0.29) benign(0.098) TCGA-D3-A2J7-06 11 61032491 61032491 C T VWCE Silent p.R692R 0.14 TCGA-D3-A2J7-06 11 63057818 63057818 G A SLC22A10 Missense_Mutation p.G61S 0.17 tolerated(0.81) benign(0.003) TCGA-D3-A2J7-06 11 6340713 6340713 C T PRKCDBP Missense_Mutation p.E156K 0.31 tolerated(0.07) benign(0.014) TCGA-D3-A2J7-06 11 65987269 65987269 C T PACS1 Missense_Mutation p.S344L 0.20 tolerated(0.11) benign(0.245) TCGA-D3-A2J7-06 11 67223027 67223027 G A CABP4 Missense_Mutation p.E45K 0.33 tolerated(0.13) benign(0.002) TCGA-D3-A2J7-06 12 101336293 101336293 G A ANO4 Missense_Mutation p.G111R 0.24 deleterious(0) probably_damaging(0.945) TCGA-D3-A2J7-06 12 103245469 103245469 G A PAH Missense_Mutation p.S303F 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 12 104025423 104025423 G A STAB2 Missense_Mutation p.G179R 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 12 105198893 105198893 T C SLC41A2 3'UTR 0.23 TCGA-D3-A2J7-06 12 10772807 10772807 T C STYK1 Missense_Mutation p.E402G 0.20 tolerated(0.1) benign(0.345) TCGA-D3-A2J7-06 12 116460261 116460261 C T MED13L Missense_Mutation p.V209I 0.16 deleterious(0) unknown(0) TCGA-D3-A2J7-06 12 120884561 120884561 C T GATC Silent p.I61I 0.22 TCGA-D3-A2J7-06 12 13724791 13724791 C T GRIN2B Missense_Mutation p.M706I 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A2J7-06 12 18891723 18891723 G A CAPZA3 Nonsense_Mutation p.W174* 0.14 TCGA-D3-A2J7-06 12 21242939 21242939 G A SLCO1B7 Missense_Mutation p.D608N 0.26 tolerated(0.47) benign(0.017) TCGA-D3-A2J7-06 12 21995340 21995340 C T ABCC9 Missense_Mutation p.M1127I 0.13 tolerated(0.1) benign(0.001) TCGA-D3-A2J7-06 12 25002810 25002810 G A BCAT1 Missense_Mutation p.S207L 0.19 tolerated(0.06) benign(0.044) TCGA-D3-A2J7-06 12 31944879 31944879 G A H3F3C Silent p.I74I 0.18 TCGA-D3-A2J7-06 12 3387672 3387672 C T TSPAN9 Missense_Mutation p.S50L 0.19 tolerated(0.05) possibly_damaging(0.537) TCGA-D3-A2J7-06 12 43777753 43777753 G A ADAMTS20 Nonsense_Mutation p.Q1494* 0.19 TCGA-D3-A2J7-06 12 459853 459853 G A KDM5A Silent p.S414S 0.16 TCGA-D3-A2J7-06 12 459854 459854 G C KDM5A Missense_Mutation p.S414C 0.16 tolerated(0.07) benign(0.196) TCGA-D3-A2J7-06 12 49360131 49360131 C T WNT10B Missense_Mutation p.G306E 0.18 tolerated(0.52) benign(0.196) TCGA-D3-A2J7-06 12 50232166 50232166 G A BCDIN3D Silent p.F289F 0.15 TCGA-D3-A2J7-06 12 51584083 51584083 G A POU6F1 Missense_Mutation p.R285W 0.18 deleterious(0) probably_damaging(0.947) TCGA-D3-A2J7-06 12 52865509 52865509 C T KRT6C Missense_Mutation p.D255N 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2J7-06 12 52941675 52941675 C T KRT71 Missense_Mutation p.R357K 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A2J7-06 12 53069058 53069058 G A KRT1 Silent p.S618S 0.21 TCGA-D3-A2J7-06 12 53608014 53608014 G A RARG Silent p.S214S 0.09 TCGA-D3-A2J7-06 12 55863664 55863664 C T OR6C70 Missense_Mutation p.E87K 0.18 deleterious_low_confidence(0.03) benign(0.003) TCGA-D3-A2J7-06 12 57872897 57872897 G A ARHGAP9 Missense_Mutation p.P98L 0.19 tolerated(0.21) benign(0.005) TCGA-D3-A2J7-06 12 62926306 62926306 C T MON2 Missense_Mutation p.R497C 0.21 tolerated(0.09) benign(0.201) TCGA-D3-A2J7-06 12 70049525 70049525 G A BEST3 Missense_Mutation p.S390F 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2J7-06 12 78573380 78573380 T A NAV3 Nonsense_Mutation p.L1790* 0.17 TCGA-D3-A2J7-06 12 81533033 81533033 C T ACSS3 Missense_Mutation p.R257C 0.14 deleterious(0) probably_damaging(0.991) TCGA-D3-A2J7-06 12 88376890 88376890 C T C12orf50 Silent p.K403K 0.18 TCGA-D3-A2J7-06 12 91347806 91347806 G A CCER1 Silent p.G238G 0.24 TCGA-D3-A2J7-06 12 91539912 91539912 G A DCN Nonsense_Mutation p.Q335* 0.36 TCGA-D3-A2J7-06 12 9246085 9246085 C T A2M Nonsense_Mutation p.W739* 0.14 TCGA-D3-A2J7-06 13 111132648 111132648 G A COL4A2 Missense_Mutation p.G890E 0.22 probably_damaging(0.982) TCGA-D3-A2J7-06 13 33628169 33628169 G A KL Missense_Mutation p.G362E 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-D3-A2J7-06 13 39621917 39621917 A T NHLRC3 Missense_Mutation p.S300C 0.16 deleterious(0.01) possibly_damaging(0.695) TCGA-D3-A2J7-06 13 67801345 67801345 G A PCDH9 Missense_Mutation p.H410Y 0.21 deleterious(0.01) possibly_damaging(0.825) TCGA-D3-A2J7-06 14 100126712 100126712 G A HHIPL1 Missense_Mutation p.G491S 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2J7-06 14 103566802 103566802 C T EXOC3L4 Silent p.S82S 0.11 TCGA-D3-A2J7-06 14 103802236 103802236 C T EIF5 Silent p.F13F 0.23 TCGA-D3-A2J7-06 14 106109851 106109851 C T IGHG2 Missense_Mutation p.E224K 0.06 tolerated(0.57) benign(0.266) TCGA-D3-A2J7-06 14 106208121 106208121 C T IGHG1 Missense_Mutation p.E228K 0.14 tolerated(0.62) benign(0.195) TCGA-D3-A2J7-06 14 106321633 106321633 G A IGHM Missense_Mutation p.H201Y 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A2J7-06 14 107078514 107078514 G A IGHV1-58 Silent p.I70I 0.14 TCGA-D3-A2J7-06 14 107083558 107083558 C T IGHV4-59 Splice_Site p.X16_splice 0.11 TCGA-D3-A2J7-06 14 19563411 19563411 C T POTEG Missense_Mutation p.L309F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2J7-06 14 20344609 20344609 C T OR4K2 Silent p.F61F 0.09 TCGA-D3-A2J7-06 14 20404621 20404621 C T OR4K1 Missense_Mutation p.P266S 0.18 tolerated(0.73) benign(0.003) TCGA-D3-A2J7-06 14 22102464 22102464 C T OR10G2 Missense_Mutation p.V179M 0.18 deleterious(0) benign(0.279) TCGA-D3-A2J7-06 14 23517499 23517499 G A CDH24 Missense_Mutation p.P717L 0.31 tolerated(0.05) benign(0.006) TCGA-D3-A2J7-06 14 33201765 33201765 G A AKAP6 Missense_Mutation p.E1036K 0.19 tolerated(0.08) probably_damaging(0.979) TCGA-D3-A2J7-06 14 36768273 36768273 G A MBIP 3'UTR 0.08 TCGA-D3-A2J7-06 14 51238084 51238084 G A NIN Silent p.L362L 0.33 TCGA-D3-A2J7-06 14 65209767 65209767 C T PLEKHG3 Silent p.P946P 0.25 TCGA-D3-A2J7-06 14 72138058 72138058 C T SIPA1L1 Silent p.I826I 0.24 TCGA-D3-A2J7-06 14 72200434 72200434 G A SIPA1L1 Missense_Mutation p.R1659K 0.21 tolerated(0.79) benign(0.002) TCGA-D3-A2J7-06 14 72818858 72818858 G A RGS6 Missense_Mutation p.R47K 0.15 tolerated(0.17) benign(0.118) TCGA-D3-A2J7-06 14 86088162 86088162 G A FLRT2 Missense_Mutation p.E102K 0.18 deleterious(0) possibly_damaging(0.899) TCGA-D3-A2J7-06 14 94069615 94069615 A G UNC79 Missense_Mutation p.N1025S 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2J7-06 15 45059759 45059759 C T TRIM69 Missense_Mutation p.S431F 0.23 deleterious(0.03) possibly_damaging(0.845) TCGA-D3-A2J7-06 15 49293101 49293101 G A SECISBP2L Missense_Mutation p.P741S 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 15 52416676 52416676 G A GNB5 Silent p.T390T 0.23 TCGA-D3-A2J7-06 15 54542546 54542546 C T UNC13C Silent p.L1118L 0.22 TCGA-D3-A2J7-06 15 59408902 59408902 C T CCNB2 Missense_Mutation p.S204F 0.18 deleterious(0.02) possibly_damaging(0.893) TCGA-D3-A2J7-06 15 59910848 59910848 G A GCNT3 Missense_Mutation p.M137I 0.16 tolerated(0.45) benign(0.042) TCGA-D3-A2J7-06 15 65553305 65553305 G A PARP16 Missense_Mutation p.P251S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 15 73852092 73852092 G A C15orf60 Splice_Site p.X213_splice 0.17 TCGA-D3-A2J7-06 15 78882972 78882972 C T CHRNA5 Silent p.V413V 0.19 TCGA-D3-A2J7-06 15 95001366 95001366 G A MCTP2 Missense_Mutation p.E751K 0.08 deleterious(0) probably_damaging(0.988) TCGA-D3-A2J7-06 16 20471599 20471599 G A ACSM2A Missense_Mutation p.A55T 0.32 tolerated(0.38) probably_damaging(0.998) TCGA-D3-A2J7-06 16 20635437 20635437 G A ACSM1 Missense_Mutation p.P543L 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 16 21208827 21208827 C T ZP2 Missense_Mutation p.E738K 0.15 tolerated(1) benign(0) TCGA-D3-A2J7-06 16 2231002 2231002 C T CASKIN1 Silent p.Q789Q 0.15 TCGA-D3-A2J7-06 16 23203689 23203689 C A SCNN1G Missense_Mutation p.S212Y 0.32 deleterious(0) possibly_damaging(0.894) TCGA-D3-A2J7-06 16 23700596 23700596 C T PLK1 Silent p.F436F 0.17 TCGA-D3-A2J7-06 16 23768611 23768611 G A CHP2 Silent p.G168G 0.12 TCGA-D3-A2J7-06 16 27373776 27373776 C G IL4R Missense_Mutation p.P368R 0.27 deleterious(0.01) possibly_damaging(0.562) TCGA-D3-A2J7-06 16 27495610 27495610 G A GTF3C1 Missense_Mutation p.S1308F 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 16 28118943 28118943 G A XPO6 Silent p.I799I 0.14 TCGA-D3-A2J7-06 16 28123301 28123301 G A XPO6 Silent p.L726L 0.27 TCGA-D3-A2J7-06 16 31926985 31926985 C T ZNF267 Missense_Mutation p.S472F 0.23 deleterious(0) probably_damaging(0.953) TCGA-D3-A2J7-06 16 333347 333347 C T PDIA2 Missense_Mutation p.P60S 0.25 tolerated(0.45) benign(0.014) TCGA-D3-A2J7-06 16 333348 333348 C T PDIA2 Missense_Mutation p.P60L 0.25 tolerated(0.16) benign(0.008) TCGA-D3-A2J7-06 16 3808895 3808895 G C CREBBP Missense_Mutation p.P1110R 0.24 unknown(0) TCGA-D3-A2J7-06 16 47630348 47630348 C T PHKB Silent p.N423N 0.19 TCGA-D3-A2J7-06 16 48173134 48173134 G A ABCC12 Silent p.F257F 0.18 TCGA-D3-A2J7-06 16 54967405 54967405 C T IRX5 Missense_Mutation p.P358S 0.21 tolerated(0.46) unknown(0) TCGA-D3-A2J7-06 16 618057 618057 C T NHLRC4 Silent p.L4L 0.26 TCGA-D3-A2J7-06 16 624430 624430 G A PIGQ Missense_Mutation p.G119D 0.16 tolerated_low_confidence(0.09) benign(0.007) TCGA-D3-A2J7-06 16 70765459 70765459 G A VAC14 Missense_Mutation p.L534F 0.21 deleterious(0) benign(0.036) TCGA-D3-A2J7-06 16 70896038 70896038 C T HYDIN Missense_Mutation p.G3897E 0.26 probably_damaging(0.988) TCGA-D3-A2J7-06 16 71007790 71007790 G A HYDIN Missense_Mutation p.S1724F 0.10 probably_damaging(0.983) TCGA-D3-A2J7-06 16 71406132 71406132 G A CALB2 Missense_Mutation p.M57I 0.11 tolerated(0.25) benign(0.024) TCGA-D3-A2J7-06 16 76572122 76572122 G A CNTNAP4 Missense_Mutation p.M962I 0.15 tolerated(0.45) benign(0.002) TCGA-D3-A2J7-06 16 77353748 77353748 C T ADAMTS18 Missense_Mutation p.E844K 0.22 deleterious(0) probably_damaging(0.973) TCGA-D3-A2J7-06 16 89350631 89350631 G A ANKRD11 Silent p.P773P 0.12 TCGA-D3-A2J7-06 16 89350632 89350632 G A ANKRD11 Missense_Mutation p.P773L 0.13 benign(0.068) TCGA-D3-A2J7-06 16 89776226 89776226 G A VPS9D1 Silent p.P449P 0.14 TCGA-D3-A2J7-06 16 9857481 9857481 G A GRIN2A Missense_Mutation p.P1307L 0.21 deleterious(0) benign(0.405) TCGA-D3-A2J7-06 17 10358064 10358064 C T MYH4 Nonsense_Mutation p.W833* 0.15 TCGA-D3-A2J7-06 17 27825354 27825354 G T TAOK1 Missense_Mutation p.G340C 0.17 tolerated(0.19) benign(0.002) TCGA-D3-A2J7-06 17 3593961 3593961 G A P2RX5 Missense_Mutation p.P125L 0.15 deleterious(0.05) benign(0.115) TCGA-D3-A2J7-06 17 3839604 3839604 G A ATP2A3 Silent p.A827A 0.17 TCGA-D3-A2J7-06 17 3839605 3839605 G A ATP2A3 Missense_Mutation p.A827V 0.17 deleterious(0.05) possibly_damaging(0.709) TCGA-D3-A2J7-06 17 39550407 39550407 G A KRT31 Missense_Mutation p.P371L 0.19 deleterious(0.05) benign(0.137) TCGA-D3-A2J7-06 17 39577662 39577662 C T KRT37 Missense_Mutation p.E400K 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 17 39661582 39661582 C T KRT13 Missense_Mutation p.G74E 0.28 deleterious(0.04) unknown(0) TCGA-D3-A2J7-06 17 48918419 48918419 C T WFIKKN2 3'UTR 0.23 TCGA-D3-A2J7-06 17 51900733 51900733 G A KIF2B Silent p.T113T 0.18 TCGA-D3-A2J7-06 17 5461840 5461840 G A NLRP1 Missense_Mutation p.R726W 0.20 deleterious(0) possibly_damaging(0.462) TCGA-D3-A2J7-06 17 6683581 6683581 C T FBXO39 Nonsense_Mutation p.Q132* 0.15 TCGA-D3-A2J7-06 17 6928392 6928392 T C BCL6B Intron 0.23 TCGA-D3-A2J7-06 17 71282105 71282105 G A CDC42EP4 Missense_Mutation p.L179F 0.19 tolerated(0.11) possibly_damaging(0.836) TCGA-D3-A2J7-06 17 71357857 71357857 C T SDK2 Silent p.E1811E 0.25 TCGA-D3-A2J7-06 17 7369559 7369559 G A ZBTB4 Missense_Mutation p.P188S 0.20 benign(0.021) TCGA-D3-A2J7-06 17 73758813 73758813 G A GALK1 Silent p.L255L 0.15 TCGA-D3-A2J7-06 17 73818610 73818610 C T UNK Silent p.F630F 0.17 TCGA-D3-A2J7-06 17 74622103 74622103 C T ST6GALNAC1 Missense_Mutation p.R497Q 0.18 probably_damaging(0.999) TCGA-D3-A2J7-06 17 78188094 78188094 G A SGSH Silent p.P180P 0.13 TCGA-D3-A2J7-06 17 78188095 78188095 G A SGSH Missense_Mutation p.P180L 0.13 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A2J7-06 17 8110589 8110589 G A AURKB Silent p.F101F 0.35 TCGA-D3-A2J7-06 18 14542741 14542741 G A POTEC Silent p.V135V 0.29 TCGA-D3-A2J7-06 18 28648938 28648938 C T DSC2 Silent p.R810R 0.34 TCGA-D3-A2J7-06 18 44260065 44260065 G A ST8SIA5 Silent p.F357F 0.25 TCGA-D3-A2J7-06 18 47108848 47108848 G A LIPG Missense_Mutation p.E385K 0.28 tolerated(0.26) benign(0.33) TCGA-D3-A2J7-06 18 61471555 61471555 C T SERPINB7 Missense_Mutation p.P277S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 18 6244485 6244485 C T L3MBTL4 Missense_Mutation p.E108K 0.24 deleterious(0) possibly_damaging(0.714) TCGA-D3-A2J7-06 18 6244486 6244486 C T L3MBTL4 Silent p.A107A 0.24 TCGA-D3-A2J7-06 18 8819105 8819105 C T SOGA2 Missense_Mutation p.P1002S 0.28 tolerated(0.28) benign(0.205) TCGA-D3-A2J7-06 19 10397740 10397740 C T ICAM4 Missense_Mutation p.P18S 0.18 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-D3-A2J7-06 19 10461495 10461495 G A TYK2 3'UTR 0.16 TCGA-D3-A2J7-06 19 10610321 10610321 G A KEAP1 Missense_Mutation p.P130L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 19 11465581 11465581 C T CCDC159 3'UTR 0.19 TCGA-D3-A2J7-06 19 11569342 11569342 C T ELAVL3 Missense_Mutation p.E140K 0.18 deleterious(0) benign(0.215) TCGA-D3-A2J7-06 19 12501407 12501407 G A ZNF799 Missense_Mutation p.S602F 0.21 tolerated(0.15) benign(0.027) TCGA-D3-A2J7-06 19 15586958 15586958 C T PGLYRP2 Missense_Mutation p.D175N 0.17 tolerated(0.36) benign(0.012) TCGA-D3-A2J7-06 19 15586959 15586959 C T PGLYRP2 Silent p.R174R 0.17 TCGA-D3-A2J7-06 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.20 TCGA-D3-A2J7-06 19 17038839 17038839 C T CPAMD8 Missense_Mutation p.R1164Q 0.26 deleterious(0.03) possibly_damaging(0.46) TCGA-D3-A2J7-06 19 18332977 18332977 C T PDE4C Silent p.K133K 0.20 TCGA-D3-A2J7-06 19 18557592 18557592 G A ELL Missense_Mutation p.P500S 0.21 tolerated(0.1) possibly_damaging(0.562) TCGA-D3-A2J7-06 19 19645890 19645890 C T YJEFN3 Silent p.V122V 0.11 TCGA-D3-A2J7-06 19 2199905 2199905 C T DOT1L Missense_Mutation p.S225L 0.22 deleterious(0.02) probably_damaging(0.96) TCGA-D3-A2J7-06 19 22785479 22785479 C T AC011467.1 5'Flank 0.20 TCGA-D3-A2J7-06 19 33701437 33701437 C T SLC7A10 Missense_Mutation p.G400D 0.24 deleterious(0) probably_damaging(0.996) TCGA-D3-A2J7-06 19 33703819 33703819 G A SLC7A10 Missense_Mutation p.P149L 0.15 deleterious(0) possibly_damaging(0.766) TCGA-D3-A2J7-06 19 35940955 35940955 C T FFAR2 Silent p.F113F 0.15 TCGA-D3-A2J7-06 19 36269472 36269472 C T ARHGAP33 Missense_Mutation p.P126L 0.25 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-D3-A2J7-06 19 36269473 36269473 C T ARHGAP33 Silent p.P126P 0.26 TCGA-D3-A2J7-06 19 36279063 36279063 C T ARHGAP33 Missense_Mutation p.P1038L 0.16 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-D3-A2J7-06 19 3760157 3760157 G A APBA3 Nonsense_Mutation p.Q36* 0.27 TCGA-D3-A2J7-06 19 37880104 37880104 C T ZNF527 Missense_Mutation p.P385S 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 19 39926582 39926582 G A RPS16 5'UTR 0.25 TCGA-D3-A2J7-06 19 41510220 41510220 G A CYP2B6 Missense_Mutation p.G118E 0.27 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A2J7-06 19 4216919 4216919 G A ANKRD24 Missense_Mutation p.G588R 0.27 tolerated_low_confidence(0.09) benign(0.026) TCGA-D3-A2J7-06 19 43383756 43383756 T C PSG1 5'UTR 0.16 TCGA-D3-A2J7-06 19 43411845 43411845 C T PSG6 Missense_Mutation p.E290K 0.18 tolerated(0.8) benign(0.042) TCGA-D3-A2J7-06 19 43762435 43762435 G A PSG9 Missense_Mutation p.H388Y 0.42 deleterious(0.01) benign(0.38) TCGA-D3-A2J7-06 19 44681407 44681407 C T ZNF226 Silent p.V664V 0.30 TCGA-D3-A2J7-06 19 47569967 47569967 C T ZC3H4 Silent p.K1186K 0.16 TCGA-D3-A2J7-06 19 50721003 50721003 G A MYH14 Silent p.E179E 0.30 TCGA-D3-A2J7-06 19 53367268 53367268 G A CTD-2331H12.5 5'Flank 0.12 TCGA-D3-A2J7-06 19 54080689 54080689 T A ZNF331 Missense_Mutation p.I292N 0.28 deleterious(0) possibly_damaging(0.837) TCGA-D3-A2J7-06 19 54756349 54756349 C T LILRB5 Missense_Mutation p.R513K 0.21 tolerated(0.12) benign(0.086) TCGA-D3-A2J7-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.21 deleterious(0) probably_damaging(0.918) TCGA-D3-A2J7-06 19 580652 580652 C T BSG Missense_Mutation p.P221L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 19 58438057 58438057 G A ZNF418 Missense_Mutation p.R498C 0.19 tolerated(0.21) benign(0.319) TCGA-D3-A2J7-06 19 760010 760010 C T MISP Missense_Mutation p.P628S 0.26 tolerated(0.22) benign(0.008) TCGA-D3-A2J7-06 19 763512 763512 C T MISP Silent p.A654A 0.12 TCGA-D3-A2J7-06 19 8159390 8159390 C T FBN3 Missense_Mutation p.E1949K 0.22 tolerated(0.07) benign(0.131) TCGA-D3-A2J7-06 19 9060909 9060909 G A MUC16 Missense_Mutation p.S8846L 0.17 unknown(0) TCGA-D3-A2J7-06 19 9069117 9069117 C T MUC16 Missense_Mutation p.R6110K 0.14 unknown(0) TCGA-D3-A2J7-06 19 9072272 9072272 G A MUC16 Silent p.T5058T 0.17 TCGA-D3-A2J7-06 19 9072273 9072273 G A MUC16 Missense_Mutation p.T5058I 0.17 unknown(0) TCGA-D3-A2J7-06 19 9085554 9085554 C T MUC16 Silent p.T2087T 0.22 TCGA-D3-A2J7-06 19 9362115 9362115 C T OR7E24 Silent p.L132L 0.25 TCGA-D3-A2J7-06 1 10523174 10523174 G A DFFA Missense_Mutation p.L242F 0.18 deleterious(0.02) possibly_damaging(0.739) TCGA-D3-A2J7-06 1 12010498 12010498 G A PLOD1 Silent p.E129E 0.16 TCGA-D3-A2J7-06 1 151518339 151518339 C T TUFT1 Intron 0.38 TCGA-D3-A2J7-06 1 152326903 152326903 G A FLG2 Missense_Mutation p.S1120L 0.22 unknown(0) TCGA-D3-A2J7-06 1 153330865 153330865 G A S100A9 Missense_Mutation p.E36K 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 1 157765931 157765931 C T FCRL1 Silent p.R416R 0.24 TCGA-D3-A2J7-06 1 158225065 158225065 G A CD1A Missense_Mutation p.E84K 0.17 deleterious(0.03) possibly_damaging(0.854) TCGA-D3-A2J7-06 1 158390164 158390164 G A OR10K2 Missense_Mutation p.H165Y 0.24 tolerated(0.08) benign(0.007) TCGA-D3-A2J7-06 1 158576796 158576796 G A OR10Z1 Missense_Mutation p.G190R 0.22 tolerated(0.47) probably_damaging(0.979) TCGA-D3-A2J7-06 1 160151515 160151515 G A ATP1A4 Silent p.T926T 0.22 TCGA-D3-A2J7-06 1 16065802 16065802 C T SLC25A34 Silent p.G272G 0.09 TCGA-D3-A2J7-06 1 16257865 16257865 A C SPEN Missense_Mutation p.K1710N 0.21 benign(0.002) TCGA-D3-A2J7-06 1 167487714 167487714 C T CD247 5'UTR 0.18 TCGA-D3-A2J7-06 1 171162576 171162576 C T FMO2 Missense_Mutation p.P79S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2J7-06 1 176915160 176915160 C T ASTN1 Silent p.E717E 0.24 TCGA-D3-A2J7-06 1 177249716 177249716 C T BRINP2 Silent p.H468H 0.15 TCGA-D3-A2J7-06 1 179783034 179783034 G A FAM163A Missense_Mutation p.G72S 0.28 tolerated(0.08) benign(0.176) TCGA-D3-A2J7-06 1 181684515 181684515 T A CACNA1E Missense_Mutation p.S405T 0.29 tolerated(0.05) benign(0.153) TCGA-D3-A2J7-06 1 185834918 185834918 G A HMCN1 Missense_Mutation p.G182R 0.19 probably_damaging(0.979) TCGA-D3-A2J7-06 1 185834919 185834919 G A HMCN1 Missense_Mutation p.G182E 0.19 probably_damaging(0.969) TCGA-D3-A2J7-06 1 190067595 190067595 C T BRINP3 Nonsense_Mutation p.W618* 0.19 TCGA-D3-A2J7-06 1 190423859 190423859 G A BRINP3 Silent p.F54F 0.14 TCGA-D3-A2J7-06 1 197073833 197073833 G A ASPM Silent p.T1516T 0.13 TCGA-D3-A2J7-06 1 201047233 201047233 C T CACNA1S Splice_Site p.X465_splice 0.15 TCGA-D3-A2J7-06 1 205238603 205238603 C T TMCC2 Missense_Mutation p.P425S 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A2J7-06 1 214209184 214209184 C T PROX1 3'UTR 0.24 TCGA-D3-A2J7-06 1 216680421 216680421 G A ESRRG Nonsense_Mutation p.R425* 0.23 TCGA-D3-A2J7-06 1 21887134 21887134 C T ALPL Missense_Mutation p.P26L 0.14 deleterious(0.01) possibly_damaging(0.774) TCGA-D3-A2J7-06 1 220162059 220162059 G A EPRS Missense_Mutation p.S883L 0.29 tolerated(0.07) benign(0.001) TCGA-D3-A2J7-06 1 226074696 226074696 C T LEFTY1 Missense_Mutation p.A278T 0.18 tolerated(0.39) probably_damaging(0.989) TCGA-D3-A2J7-06 1 228109609 228109609 G A WNT9A Silent p.F236F 0.24 TCGA-D3-A2J7-06 1 241799053 241799053 G A CHML Missense_Mutation p.P6S 0.20 deleterious(0) probably_damaging(0.975) TCGA-D3-A2J7-06 1 24201331 24201331 G A CNR2 Silent p.F259F 0.16 TCGA-D3-A2J7-06 1 246810636 246810636 C T CNST Missense_Mutation p.S378F 0.20 deleterious(0.01) possibly_damaging(0.704) TCGA-D3-A2J7-06 1 246810637 246810637 C T CNST Silent p.S378S 0.20 TCGA-D3-A2J7-06 1 248201574 248201574 A T OR2L2 Missense_Mutation p.E2V 0.18 deleterious(0) possibly_damaging(0.588) TCGA-D3-A2J7-06 1 248308755 248308755 C T OR2M5 Silent p.F102F 0.17 TCGA-D3-A2J7-06 1 248512160 248512160 C T OR14C36 Silent p.S28S 0.22 TCGA-D3-A2J7-06 1 26607295 26607295 G A SH3BGRL3 Missense_Mutation p.G30R 0.34 deleterious(0.05) probably_damaging(0.951) TCGA-D3-A2J7-06 1 27278613 27278613 G A C1orf172 Missense_Mutation p.R87W 0.25 deleterious(0) benign(0.401) TCGA-D3-A2J7-06 1 32151372 32151372 C T COL16A1 Splice_Site p.X629_splice 0.16 TCGA-D3-A2J7-06 1 34049314 34049314 C T CSMD2 Missense_Mutation p.D2392N 0.26 tolerated(0.12) benign(0.003) TCGA-D3-A2J7-06 1 35365833 35365833 C T DLGAP3 Silent p.K383K 0.18 TCGA-D3-A2J7-06 1 36060083 36060083 G A TFAP2E Missense_Mutation p.V379I 0.11 tolerated(1) benign(0.166) TCGA-D3-A2J7-06 1 46726410 46726410 C T RAD54L Silent p.F163F 0.13 TCGA-D3-A2J7-06 1 47395846 47395846 C T CYP4A11 Missense_Mutation p.G501R 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 1 57173468 57173468 C T PRKAA2 3'UTR 0.19 TCGA-D3-A2J7-06 1 70477588 70477588 C T LRRC7 Silent p.F333F 0.10 TCGA-D3-A2J7-06 1 75038211 75038211 C T C1orf173 Silent p.R1061R 0.24 TCGA-D3-A2J7-06 1 9164555 9164555 G A GPR157 Missense_Mutation p.P311S 0.15 tolerated(0.48) benign(0.003) TCGA-D3-A2J7-06 1 9324120 9324120 C T H6PD Missense_Mutation p.S523F 0.13 tolerated(0.08) benign(0.027) TCGA-D3-A2J7-06 1 9815340 9815340 C T CLSTN1 Missense_Mutation p.G91E 0.18 deleterious(0) probably_damaging(0.94) TCGA-D3-A2J7-06 20 12989790 12989790 G A SPTLC3 5'UTR 0.14 TCGA-D3-A2J7-06 20 1616113 1616113 C T SIRPG Missense_Mutation p.R294K 0.14 tolerated(0.1) benign(0) TCGA-D3-A2J7-06 20 39801087 39801087 C T PLCG1 Missense_Mutation p.R978W 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A2J7-06 20 42694734 42694734 C T TOX2 Missense_Mutation p.P448L 0.27 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J7-06 20 43385542 43385542 G A RIMS4 Silent p.L197L 0.18 TCGA-D3-A2J7-06 20 44978996 44978996 G A SLC35C2 3'UTR 0.15 TCGA-D3-A2J7-06 20 4770301 4770301 G C RASSF2 Missense_Mutation p.R194G 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 20 50139727 50139727 G A NFATC2 Silent p.F351F 0.14 TCGA-D3-A2J7-06 20 57415046 57415046 G C RP4-806M20.3 5'Flank 0.27 TCGA-D3-A2J7-06 20 57829131 57829131 C T ZNF831 Missense_Mutation p.S1456L 0.23 deleterious(0.02) benign(0) TCGA-D3-A2J7-06 21 15352143 15352143 C T ANKRD20A11P RNA 0.20 TCGA-D3-A2J7-06 21 34926484 34926484 T G SON Silent p.G1649G 0.17 TCGA-D3-A2J7-06 21 35821970 35821970 C T KCNE1 5'UTR 0.30 TCGA-D3-A2J7-06 21 38309625 38309625 G A HLCS Silent p.I40I 0.30 TCGA-D3-A2J7-06 21 45548478 45548478 C T PWP2 Silent p.I852I 0.30 TCGA-D3-A2J7-06 21 45994720 45994720 C T KRTAP10-4 Missense_Mutation p.S362F 0.25 deleterious(0) unknown(0) TCGA-D3-A2J7-06 22 22300467 22300467 C T PPM1F 5'UTR 0.58 TCGA-D3-A2J7-06 22 26219542 26219542 G A MYO18B Silent p.E864E 0.19 TCGA-D3-A2J7-06 22 31722980 31722980 G A PATZ1 Missense_Mutation p.S654F 0.32 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-D3-A2J7-06 22 39909779 39909779 C T MIEF1 Silent p.S281S 0.12 TCGA-D3-A2J7-06 22 45818182 45818182 C T RIBC2 Missense_Mutation p.T185I 0.29 tolerated(0.11) benign(0.087) TCGA-D3-A2J7-06 22 46655683 46655683 G A PKDREJ Silent p.S1179S 0.31 TCGA-D3-A2J7-06 22 46656192 46656192 T G PKDREJ Missense_Mutation p.T1010P 0.17 deleterious(0.04) possibly_damaging(0.548) TCGA-D3-A2J7-06 22 50660915 50660915 G A TUBGCP6 Missense_Mutation p.R793C 0.39 tolerated(0.1) benign(0.008) TCGA-D3-A2J7-06 2 105716142 105716142 A G MRPS9 Missense_Mutation p.T372A 0.13 tolerated(0.53) benign(0.006) TCGA-D3-A2J7-06 2 107459497 107459497 C T ST6GAL2 Missense_Mutation p.E313K 0.28 probably_damaging(0.936) TCGA-D3-A2J7-06 2 108489103 108489103 G A RGPD4 Missense_Mutation p.R1548K 0.11 tolerated(0.69) benign(0.001) TCGA-D3-A2J7-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.39 TCGA-D3-A2J7-06 2 167297944 167297944 G A SCN7A Missense_Mutation p.P707S 0.48 tolerated(0.23) benign(0.009) TCGA-D3-A2J7-06 2 179414910 179414910 C T TTN Missense_Mutation p.G30552E 0.41 TCGA-D3-A2J7-06 2 179569401 179569401 G A TTN Missense_Mutation p.S9933L 0.33 TCGA-D3-A2J7-06 2 179613791 179613791 C T TTN Intron 0.12 TCGA-D3-A2J7-06 2 179632521 179632521 C T TTN Missense_Mutation p.D3146N 0.32 TCGA-D3-A2J7-06 2 196571437 196571437 C T SLC39A10 Silent p.F438F 0.36 TCGA-D3-A2J7-06 2 196786915 196786915 G A DNAH7 Missense_Mutation p.H1278Y 0.29 deleterious(0) benign(0.065) TCGA-D3-A2J7-06 2 21231015 21231015 C T APOB Missense_Mutation p.E2909K 0.21 benign(0.225) TCGA-D3-A2J7-06 2 230875489 230875489 G A FBXO36 Silent p.L152L 0.36 TCGA-D3-A2J7-06 2 230875490 230875490 G A FBXO36 Missense_Mutation p.A153T 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 2 27722055 27722055 G A GCKR Missense_Mutation p.G159R 0.16 tolerated(0.06) possibly_damaging(0.473) TCGA-D3-A2J7-06 2 31135094 31135094 G A GALNT14 Nonsense_Mutation p.R504* 0.21 TCGA-D3-A2J7-06 2 31599949 31599949 G A XDH Missense_Mutation p.A466V 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-D3-A2J7-06 2 76975883 76975883 A G LRRTM4 Missense_Mutation p.F571L 0.18 tolerated_low_confidence(0.26) benign(0.001) TCGA-D3-A2J7-06 2 88882949 88882949 G A EIF2AK3 Nonsense_Mutation p.R588* 0.18 TCGA-D3-A2J7-06 2 89339959 89339959 C T IGKV1-12 Missense_Mutation p.G38E 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A2J7-06 2 89399777 89399777 G A IGKV1-16 Silent p.F17F 0.08 TCGA-D3-A2J7-06 2 90139155 90139155 C T IGKV1D-16 Silent p.F17F 0.07 TCGA-D3-A2J7-06 2 9515056 9515056 C T ASAP2 Missense_Mutation p.P577S 0.19 tolerated(0.08) benign(0.032) TCGA-D3-A2J7-06 2 95942371 95942371 C T PROM2 Silent p.S216S 0.17 TCGA-D3-A2J7-06 2 96952165 96952165 G A SNRNP200 Missense_Mutation p.P1296L 0.16 deleterious(0.02) benign(0.008) TCGA-D3-A2J7-06 2 98851193 98851193 C T VWA3B Silent p.S797S 0.16 TCGA-D3-A2J7-06 2 99448866 99448866 C T KIAA1211L Missense_Mutation p.R162K 0.20 deleterious(0.01) benign(0.14) TCGA-D3-A2J7-06 3 100174744 100174744 C T LNP1 Missense_Mutation p.P171S 0.11 tolerated(0.09) benign(0.028) TCGA-D3-A2J7-06 3 109031524 109031524 C T DPPA2 Missense_Mutation p.E17K 0.22 deleterious(0.04) benign(0.143) TCGA-D3-A2J7-06 3 111927207 111927207 G A SLC9C1 Missense_Mutation p.R602C 0.13 tolerated(0.06) benign(0.009) TCGA-D3-A2J7-06 3 121712426 121712426 C T ILDR1 Silent p.L390L 0.20 TCGA-D3-A2J7-06 3 123009975 123009975 G A ADCY5 Silent p.I1104I 0.21 TCGA-D3-A2J7-06 3 124209608 124209608 G A KALRN Silent p.P1486P 0.14 TCGA-D3-A2J7-06 3 125249392 125249392 C T OSBPL11 Nonsense_Mutation p.W737* 0.24 TCGA-D3-A2J7-06 3 130188179 130188179 C T COL6A5 Missense_Mutation p.S2444F 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 3 137843166 137843166 C T A4GNT Silent p.R321R 0.23 TCGA-D3-A2J7-06 3 156867343 156867343 G A CCNL1 Missense_Mutation p.S355F 0.16 deleterious(0.02) benign(0.001) TCGA-D3-A2J7-06 3 167183106 167183106 G A SERPINI2 Missense_Mutation p.L252F 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 3 168834004 168834004 C T MECOM Silent p.G429G 0.15 TCGA-D3-A2J7-06 3 181430308 181430308 G A SOX2 Missense_Mutation p.G54R 0.24 deleterious(0) probably_damaging(0.995) TCGA-D3-A2J7-06 3 183823756 183823756 C T HTR3E Silent p.I334I 0.17 TCGA-D3-A2J7-06 3 184040958 184040959 - T EIF4G1 Frame_Shift_Ins p.G681Wfs*6 0.21 TCGA-D3-A2J7-06 3 35835244 35835244 C G ARPP21 Missense_Mutation p.P746A 0.26 deleterious(0) benign(0.187) TCGA-D3-A2J7-06 3 38753670 38753670 G A SCN10A Silent p.Y1357Y 0.25 TCGA-D3-A2J7-06 3 38926851 38926851 C T SCN11A Missense_Mutation p.D998N 0.30 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A2J7-06 3 49200967 49200967 G A CCDC71 Silent p.P225P 0.23 TCGA-D3-A2J7-06 3 49742550 49742550 C T RNF123 Missense_Mutation p.P698L 0.36 tolerated(0.07) benign(0.014) TCGA-D3-A2J7-06 3 50326035 50326035 C A IFRD2 Silent p.S441S 0.17 TCGA-D3-A2J7-06 3 50329968 50329968 C T IFRD2 5'Flank 0.25 TCGA-D3-A2J7-06 3 55768834 55768834 C T ERC2 Missense_Mutation p.E893K 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J7-06 3 67053841 67053841 G A KBTBD8 Silent p.Q150Q 0.33 TCGA-D3-A2J7-06 3 77684173 77684173 C T ROBO2 Nonsense_Mutation p.R1321* 0.23 TCGA-D3-A2J7-06 3 9027346 9027346 G A SRGAP3 Missense_Mutation p.R1053C 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A2J7-06 3 98109620 98109620 C T OR5K3 Silent p.I37I 0.19 TCGA-D3-A2J7-06 4 100237269 100237269 C T ADH1B Missense_Mutation p.G118D 0.23 tolerated(0.18) benign(0.001) TCGA-D3-A2J7-06 4 104057448 104057448 C T CENPE Silent p.L2124L 0.15 TCGA-D3-A2J7-06 4 115544202 115544202 C T UGT8 Missense_Mutation p.L56F 0.17 tolerated(0.12) benign(0.007) TCGA-D3-A2J7-06 4 120241838 120241838 C T FABP2 Missense_Mutation p.G76E 0.16 deleterious(0) possibly_damaging(0.888) TCGA-D3-A2J7-06 4 142949951 142949951 C T INPP4B Missense_Mutation p.G920E 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 4 142949952 142949952 C T INPP4B Missense_Mutation p.G920R 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 4 155490686 155490686 G A FGB Missense_Mutation p.D327N 0.20 deleterious(0) possibly_damaging(0.711) TCGA-D3-A2J7-06 4 158224858 158224858 G A GRIA2 Missense_Mutation p.M128I 0.26 tolerated(0.09) benign(0.094) TCGA-D3-A2J7-06 4 166915607 166915607 C T TLL1 Missense_Mutation p.P146S 0.13 tolerated(0.44) benign(0.018) TCGA-D3-A2J7-06 4 183694733 183694733 C T TENM3 Silent p.S1667S 0.17 TCGA-D3-A2J7-06 4 184174999 184174999 T A WWC2 Missense_Mutation p.I348N 0.21 deleterious(0) possibly_damaging(0.83) TCGA-D3-A2J7-06 4 187158021 187158021 A C KLKB1 Missense_Mutation p.K139Q 0.23 tolerated(0.16) possibly_damaging(0.597) TCGA-D3-A2J7-06 4 20512738 20512738 G A SLIT2 Missense_Mutation p.G346R 0.30 deleterious(0.01) probably_damaging(1) TCGA-D3-A2J7-06 4 26483701 26483701 G A CCKAR Silent p.L282L 0.22 TCGA-D3-A2J7-06 4 419882 419882 A T ABCA11P RNA 0.38 TCGA-D3-A2J7-06 4 47537581 47537581 G A ATP10D Missense_Mutation p.G278R 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J7-06 4 48990598 48990598 C T CWH43 Missense_Mutation p.L50F 0.15 tolerated(0.48) benign(0.03) TCGA-D3-A2J7-06 4 5667321 5667321 G A EVC2 Missense_Mutation p.S309F 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 4 69433498 69433498 C T UGT2B17 Silent p.Q235Q 0.17 TCGA-D3-A2J7-06 4 69535624 69535624 C T UGT2B15 Missense_Mutation p.S238N 0.18 deleterious(0.01) benign(0.33) TCGA-D3-A2J7-06 4 69817356 69817356 G A UGT2A3 Silent p.V41V 0.21 TCGA-D3-A2J7-06 4 73930991 73930991 T C COX18 Missense_Mutation p.S192G 0.23 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A2J7-06 4 85538786 85538786 G A CDS1 Missense_Mutation p.D138N 0.25 tolerated(0.33) benign(0.019) TCGA-D3-A2J7-06 4 89378622 89378622 C T HERC5 Missense_Mutation p.R68C 0.36 deleterious(0.03) benign(0.011) TCGA-D3-A2J7-06 4 90169876 90169876 G A GPRIN3 Silent p.S462S 0.23 TCGA-D3-A2J7-06 4 9784903 9784903 C T DRD5 Missense_Mutation p.A417V 0.10 tolerated(0.45) benign(0.005) TCGA-D3-A2J7-06 4 9784922 9784922 G A DRD5 Silent p.R423R 0.15 TCGA-D3-A2J7-06 5 1235773 1235773 G A SLC6A18 Missense_Mutation p.G206E 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 5 123984196 123984196 G A ZNF608 Silent p.S627S 0.30 TCGA-D3-A2J7-06 5 13751285 13751285 G A DNAH5 Missense_Mutation p.P3705S 0.19 possibly_damaging(0.876) TCGA-D3-A2J7-06 5 138160293 138160293 C T CTNNA1 Silent p.L221L 0.16 TCGA-D3-A2J7-06 5 13841988 13841988 G A DNAH5 Missense_Mutation p.S1766F 0.13 possibly_damaging(0.788) TCGA-D3-A2J7-06 5 13911557 13911557 G A DNAH5 Nonsense_Mutation p.Q528* 0.18 TCGA-D3-A2J7-06 5 140166324 140166324 C T PCDHA1 Missense_Mutation p.S150L 0.12 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-D3-A2J7-06 5 140188633 140188633 C T PCDHA4 Missense_Mutation p.P621S 0.20 deleterious_low_confidence(0.01) benign(0.063) TCGA-D3-A2J7-06 5 140202108 140202108 T C PCDHA5 Silent p.L250L 0.16 TCGA-D3-A2J7-06 5 140207899 140207899 C T PCDHA6 Silent p.L75L 0.22 TCGA-D3-A2J7-06 5 140221732 140221732 G A PCDHA8 Missense_Mutation p.A276T 0.15 deleterious_low_confidence(0.01) benign(0.04) TCGA-D3-A2J7-06 5 140482489 140482489 G A PCDHB3 Silent p.E752E 0.20 TCGA-D3-A2J7-06 5 140515444 140515444 C T PCDHB5 Missense_Mutation p.P143L 0.18 tolerated_low_confidence(0.6) benign(0.004) TCGA-D3-A2J7-06 5 140574498 140574498 C T PCDHB10 Silent p.F791F 0.27 TCGA-D3-A2J7-06 5 140763909 140763909 T G PCDHGA7 Missense_Mutation p.S481R 0.21 deleterious_low_confidence(0.01) benign(0.286) TCGA-D3-A2J7-06 5 147695264 147695264 G A SPINK7 3'UTR 0.22 TCGA-D3-A2J7-06 5 154394617 154394617 G A KIF4B Missense_Mutation p.E400K 0.18 tolerated(0.16) benign(0.027) TCGA-D3-A2J7-06 5 154396033 154396033 G A KIF4B Missense_Mutation p.G872R 0.16 tolerated(0.14) benign(0.019) TCGA-D3-A2J7-06 5 156940501 156940501 G A ADAM19 Nonsense_Mutation p.R227* 0.10 TCGA-D3-A2J7-06 5 16067884 16067884 C T MARCH11 Missense_Mutation p.G302E 0.18 deleterious(0) probably_damaging(0.996) TCGA-D3-A2J7-06 5 161119029 161119029 G A GABRA6 Missense_Mutation p.M303I 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A2J7-06 5 167919739 167919739 C T RARS Missense_Mutation p.H86Y 0.18 tolerated(0.2) benign(0) TCGA-D3-A2J7-06 5 168216613 168216613 G A SLIT3 Missense_Mutation p.S344L 0.18 deleterious(0) benign(0.361) TCGA-D3-A2J7-06 5 169677790 169677790 G A LCP2 Missense_Mutation p.R475C 0.19 deleterious(0) probably_damaging(0.984) TCGA-D3-A2J7-06 5 37198860 37198860 G A C5orf42 Missense_Mutation p.P1206S 0.12 tolerated(0.11) probably_damaging(0.919) TCGA-D3-A2J7-06 5 38403980 38403980 G A EGFLAM Intron 0.16 TCGA-D3-A2J7-06 5 39394359 39394359 C T DAB2 Missense_Mutation p.A22T 0.15 tolerated(0.3) benign(0.157) TCGA-D3-A2J7-06 5 40945458 40945458 C T C7 Silent p.I242I 0.14 TCGA-D3-A2J7-06 5 41181562 41181562 C T C6 Missense_Mutation p.G276R 0.16 tolerated(0.64) benign(0.001) TCGA-D3-A2J7-06 5 41382492 41382492 T C PLCXD3 Missense_Mutation p.N83S 0.14 tolerated(0.42) benign(0.055) TCGA-D3-A2J7-06 5 55168166 55168166 C T IL31RA Missense_Mutation p.S114F 0.26 deleterious(0.01) possibly_damaging(0.535) TCGA-D3-A2J7-06 5 75591627 75591627 C T SV2C Silent p.F454F 0.14 TCGA-D3-A2J7-06 5 82817888 82817888 A G VCAN Missense_Mutation p.T1255A 0.15 tolerated(0.07) benign(0.027) TCGA-D3-A2J7-06 6 109294619 109294619 C T ARMC2 Missense_Mutation p.H836Y 0.30 tolerated(1) benign(0.002) TCGA-D3-A2J7-06 6 127476502 127476502 G A RSPO3 Missense_Mutation p.A185T 0.33 tolerated(0.1) possibly_damaging(0.771) TCGA-D3-A2J7-06 6 128222009 128222009 G A THEMIS Silent p.I23I 0.21 TCGA-D3-A2J7-06 6 165863797 165863797 T C PDE10A Silent p.E93E 0.22 TCGA-D3-A2J7-06 7 100017492 100017492 G A ZCWPW1 Missense_Mutation p.P15S 0.14 tolerated_low_confidence(0.19) benign(0.063) TCGA-D3-A2J7-06 7 100856395 100856395 G A PLOD3 Missense_Mutation p.P257L 0.19 tolerated(0.09) possibly_damaging(0.806) TCGA-D3-A2J7-06 7 101957790 101957790 C T SH2B2 Silent p.L478L 0.19 TCGA-D3-A2J7-06 7 103202352 103202352 C T RELN Silent p.G1753G 0.22 TCGA-D3-A2J7-06 7 107221207 107221207 T A BCAP29 5'UTR 0.23 TCGA-D3-A2J7-06 7 116339236 116339236 C T MET Missense_Mutation p.S33F 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J7-06 7 123267311 123267311 G A ASB15 Missense_Mutation p.R282Q 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-D3-A2J7-06 7 124386789 124386789 G A GPR37 Silent p.V544V 0.16 TCGA-D3-A2J7-06 7 128494692 128494692 G A FLNC Missense_Mutation p.R2318Q 0.17 deleterious(0.02) possibly_damaging(0.526) TCGA-D3-A2J7-06 7 130135307 130135307 C T MEST Missense_Mutation p.S42L 0.15 tolerated(0.08) benign(0.206) TCGA-D3-A2J7-06 7 132192613 132192613 G A PLXNA4 Silent p.L280L 0.12 TCGA-D3-A2J7-06 7 140273659 140273659 G A DENND2A Silent p.F465F 0.15 TCGA-D3-A2J7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-D3-A2J7-06 7 141619380 141619380 G A OR9A4 Silent p.R235R 0.08 TCGA-D3-A2J7-06 7 141673490 141673490 G A TAS2R38 5'UTR 0.16 TCGA-D3-A2J7-06 7 141762457 141762457 T A MGAM Missense_Mutation p.N1404K 0.27 tolerated(0.06) possibly_damaging(0.763) TCGA-D3-A2J7-06 7 142001108 142001108 C T TRBV2 Missense_Mutation p.S34F 0.17 TCGA-D3-A2J7-06 7 143633111 143633111 C T OR2F2 Silent p.P262P 0.15 TCGA-D3-A2J7-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.18 deleterious(0.03) benign(0.003) TCGA-D3-A2J7-06 7 143747855 143747855 G A OR2A5 Missense_Mutation p.D121N 0.37 deleterious(0) probably_damaging(0.978) TCGA-D3-A2J7-06 7 143771818 143771818 G A OR2A25 Missense_Mutation p.G169E 0.17 deleterious(0.02) possibly_damaging(0.493) TCGA-D3-A2J7-06 7 1474239 1474239 G A MICALL2 Missense_Mutation p.S903F 0.17 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2J7-06 7 151815816 151815816 G A GALNT11 Silent p.Q502Q 0.10 TCGA-D3-A2J7-06 7 18688106 18688106 C T HDAC9 Missense_Mutation p.P423S 0.20 tolerated(0.81) possibly_damaging(0.525) TCGA-D3-A2J7-06 7 21789945 21789945 G A DNAH11 Nonsense_Mutation p.W2975* 0.36 TCGA-D3-A2J7-06 7 32109934 32109934 G A PDE1C Intron 0.11 TCGA-D3-A2J7-06 7 50459541 50459541 C T IKZF1 Missense_Mutation p.S235F 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-D3-A2J7-06 7 75048176 75048176 C T POM121C Missense_Mutation p.G956E 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A2J7-06 7 75167456 75167456 A G HIP1 3'UTR 0.21 TCGA-D3-A2J7-06 7 75174462 75174462 A G HIP1 Missense_Mutation p.Y862H 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2J7-06 7 82538321 82538321 G A PCLO Silent p.L4437L 0.12 TCGA-D3-A2J7-06 7 96637108 96637108 G A DLX6 Missense_Mutation p.E199K 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2J7-06 8 100654325 100654325 C T VPS13B Missense_Mutation p.S1861L 0.15 tolerated(0.32) benign(0.003) TCGA-D3-A2J7-06 8 110448612 110448612 C T PKHD1L1 Missense_Mutation p.S1184L 0.17 deleterious(0.04) possibly_damaging(0.889) TCGA-D3-A2J7-06 8 131880139 131880139 G A ADCY8 Silent p.I721I 0.09 TCGA-D3-A2J7-06 8 131896878 131896878 C T ADCY8 Missense_Mutation p.D681N 0.39 deleterious(0.05) probably_damaging(0.993) TCGA-D3-A2J7-06 8 21844783 21844783 C T XPO7 Missense_Mutation p.S570F 0.24 tolerated(0.05) benign(0.299) TCGA-D3-A2J7-06 8 24350082 24350082 G A ADAM7 Missense_Mutation p.E543K 0.12 tolerated(0.46) benign(0.009) TCGA-D3-A2J7-06 8 30040728 30040728 C T DCTN6 3'UTR 0.50 TCGA-D3-A2J7-06 8 39682369 39682369 C T ADAM2 Missense_Mutation p.G79E 0.37 tolerated(0.08) possibly_damaging(0.896) TCGA-D3-A2J7-06 8 41573301 41573301 C T ANK1 Missense_Mutation p.E524K 0.10 tolerated(0.06) possibly_damaging(0.542) TCGA-D3-A2J7-06 8 41798675 41798675 G A KAT6A Silent p.A908A 0.13 TCGA-D3-A2J7-06 8 57354176 57354176 G A PENK Silent p.S153S 0.25 TCGA-D3-A2J7-06 8 57354177 57354177 G A PENK Missense_Mutation p.S153F 0.25 tolerated(0.05) benign(0.036) TCGA-D3-A2J7-06 8 61735191 61735191 C T CHD7 Silent p.P1029P 0.14 TCGA-D3-A2J7-06 8 62289186 62289186 C T CLVS1 Missense_Mutation p.R160C 0.17 deleterious(0) probably_damaging(0.989) TCGA-D3-A2J7-06 9 118949536 118949536 C T PAPPA Silent p.S173S 0.14 TCGA-D3-A2J7-06 9 118949853 118949853 C T PAPPA Missense_Mutation p.T279I 0.26 tolerated(0.12) possibly_damaging(0.695) TCGA-D3-A2J7-06 9 21305033 21305033 G A IFNA5 Nonsense_Mutation p.Q75* 0.31 TCGA-D3-A2J7-06 9 74526531 74526531 G A C9orf85 5'UTR 0.21 TCGA-D3-A2J7-06 9 74828889 74828889 C T GDA Missense_Mutation p.S187L 0.21 deleterious(0) probably_damaging(0.982) TCGA-D3-A2J7-06 9 78641900 78641900 G A PCSK5 Silent p.V193V 0.18 TCGA-D3-A2J7-06 9 8521304 8521304 C T PTPRD Missense_Mutation p.E312K 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2J7-06 9 94538041 94538041 G A ROR2 Missense_Mutation p.P53S 0.21 tolerated_low_confidence(0.19) benign(0.001) TCGA-D3-A2J7-06 X 107331269 107331269 G - PSMD10 Frame_Shift_Del p.L92Ffs*8 0.34 TCGA-D3-A2J7-06 X 124029836 124029836 C T TENM1 Missense_Mutation p.E158K 0.31 deleterious_low_confidence(0.02) benign(0.179) TCGA-D3-A2J7-06 X 130411013 130411013 G A IGSF1 Silent p.I841I 0.38 TCGA-D3-A2J7-06 X 135829724 135829724 C T ARHGEF6 Missense_Mutation p.G93R 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2J7-06 X 1401651 1401651 C T CSF2RA Missense_Mutation p.L19F 0.25 tolerated(0.1) benign(0.257) TCGA-D3-A2J7-06 X 150348250 150348250 C T GPR50 Silent p.I65I 0.34 TCGA-D3-A2J7-06 X 3242438 3242438 C T MXRA5 Missense_Mutation p.E430K 0.38 tolerated(0.29) benign(0.214) TCGA-D3-A2J7-06 X 35959408 35959408 C T CXorf22 Missense_Mutation p.P137L 0.38 deleterious(0.01) probably_damaging(1) TCGA-D3-A2J7-06 X 37969626 37969626 G A SYTL5 Nonsense_Mutation p.W518* 0.32 TCGA-D3-A2J7-06 X 99942016 99942016 G A SYTL4 Intron 0.42 TCGA-D3-A2J8-06 10 102242541 102242541 G A WNT8B Missense_Mutation p.G342S 0.21 tolerated_low_confidence(0.4) benign(0.001) TCGA-D3-A2J8-06 10 103433373 103433373 G A FBXW4 Silent p.F138F 0.15 TCGA-D3-A2J8-06 10 105181256 105181256 C T PDCD11 Missense_Mutation p.T810I 0.17 tolerated(0.12) benign(0.088) TCGA-D3-A2J8-06 10 105893468 105893468 C T WDR96 Nonsense_Mutation p.W1502* 0.18 TCGA-D3-A2J8-06 10 108439046 108439046 C T SORCS1 Missense_Mutation p.V570I 0.13 tolerated(1) benign(0.048) TCGA-D3-A2J8-06 10 115947891 115947891 G A TDRD1 Missense_Mutation p.G101R 0.21 deleterious(0.04) probably_damaging(0.991) TCGA-D3-A2J8-06 10 117825120 117825120 G A GFRA1 Silent p.S405S 0.14 TCGA-D3-A2J8-06 10 122612140 122612140 T C WDR11 Missense_Mutation p.V64A 0.19 deleterious(0.01) benign(0.347) TCGA-D3-A2J8-06 10 124390648 124390648 G A DMBT1 Missense_Mutation p.G1937E 0.16 deleterious(0.03) probably_damaging(1) TCGA-D3-A2J8-06 10 124402872 124402872 C T DMBT1 Silent p.I2400I 0.28 TCGA-D3-A2J8-06 10 125447529 125447529 C T GPR26 Silent p.S289S 0.11 TCGA-D3-A2J8-06 10 129871687 129871687 G A PTPRE Nonsense_Mutation p.W517* 0.17 TCGA-D3-A2J8-06 10 129881150 129881150 G A PTPRE Missense_Mutation p.D695N 0.16 tolerated(0.22) probably_damaging(0.998) TCGA-D3-A2J8-06 10 26792132 26792132 G A APBB1IP Missense_Mutation p.E154K 0.08 tolerated(0.27) benign(0.001) TCGA-D3-A2J8-06 10 26825070 26825070 G A APBB1IP Missense_Mutation p.G323E 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 10 28347533 28347533 C T MPP7 Splice_Site p.X433_splice 0.10 TCGA-D3-A2J8-06 10 33134500 33134500 A G C10ORF68 Missense_Mutation p.T399A 0.10 deleterious(0.04) benign(0.009) TCGA-D3-A2J8-06 10 33143406 33143406 C T C10ORF68 Missense_Mutation p.P610L 0.21 deleterious(0) probably_damaging(0.967) TCGA-D3-A2J8-06 10 37430974 37430974 C T ANKRD30A Silent p.I327I 0.11 TCGA-D3-A2J8-06 10 50227709 50227709 C T VSTM4 Missense_Mutation p.E317K 0.18 deleterious(0) possibly_damaging(0.534) TCGA-D3-A2J8-06 10 50532381 50532381 C T C10orf71 Silent p.I597I 0.26 TCGA-D3-A2J8-06 10 52103748 52103748 C T SGMS1 Missense_Mutation p.D43N 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 10 52575824 52575824 G A A1CF Silent p.F369F 0.22 TCGA-D3-A2J8-06 10 61955965 61955965 C T ANK3 Missense_Mutation p.D609N 0.18 probably_damaging(0.999) TCGA-D3-A2J8-06 10 6520992 6520992 G A PRKCQ Missense_Mutation p.P439S 0.11 deleterious(0) probably_damaging(0.984) TCGA-D3-A2J8-06 10 70411639 70411639 C T TET1 Missense_Mutation p.T1438I 0.21 deleterious(0.03) possibly_damaging(0.591) TCGA-D3-A2J8-06 10 73511448 73511448 C T C10orf54 Missense_Mutation p.G292E 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2J8-06 10 73511449 73511449 C T C10orf54 Missense_Mutation p.G292R 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 10 7679332 7679332 C T ITIH5 Missense_Mutation p.E171K 0.13 deleterious(0.03) possibly_damaging(0.46) TCGA-D3-A2J8-06 10 84718705 84718705 G A NRG3 Silent p.K386K 0.25 TCGA-D3-A2J8-06 10 85993963 85993963 G A LRIT1 Missense_Mutation p.P254L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 10 89692829 89692829 T G PTEN Missense_Mutation p.C105G 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2J8-06 10 90582746 90582746 C T ANKRD22 Silent p.R176R 0.17 TCGA-D3-A2J8-06 10 91498211 91498211 C T KIF20B Nonsense_Mutation p.Q1165* 0.22 TCGA-D3-A2J8-06 10 95553074 95553074 G A LGI1 Missense_Mutation p.E269K 0.14 tolerated(0.11) benign(0.354) TCGA-D3-A2J8-06 10 95791744 95791744 C T PLCE1 Missense_Mutation p.A314V 0.20 tolerated_low_confidence(0.09) benign(0) TCGA-D3-A2J8-06 10 96612490 96612490 G A CYP2C19 Missense_Mutation p.G431E 0.24 deleterious(0) possibly_damaging(0.901) TCGA-D3-A2J8-06 10 98064354 98064354 G A DNTT Missense_Mutation p.D34N 0.23 tolerated(0.12) benign(0.023) TCGA-D3-A2J8-06 10 98138808 98138808 C T TLL2 Missense_Mutation p.E746K 0.16 tolerated(0.14) possibly_damaging(0.493) TCGA-D3-A2J8-06 10 98170121 98170121 C T TLL2 Missense_Mutation p.E387K 0.18 deleterious(0.05) probably_damaging(0.975) TCGA-D3-A2J8-06 11 102710968 102710968 G A MMP3 Missense_Mutation p.S269F 0.12 deleterious(0.04) possibly_damaging(0.609) TCGA-D3-A2J8-06 11 106558339 106558339 G A GUCY1A2 Missense_Mutation p.S743L 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-D3-A2J8-06 11 110030084 110030084 C T ZC3H12C Silent p.I339I 0.20 TCGA-D3-A2J8-06 11 113780094 113780094 C T HTR3B Missense_Mutation p.H44Y 0.12 deleterious(0.02) possibly_damaging(0.566) TCGA-D3-A2J8-06 11 118774102 118774102 G T BCL9L Missense_Mutation p.Q198K 0.11 benign(0.007) TCGA-D3-A2J8-06 11 121414377 121414377 G A SORL1 Silent p.S602S 0.12 TCGA-D3-A2J8-06 11 122774767 122774767 T C C11orf63 Missense_Mutation p.L160S 0.12 tolerated(0.31) benign(0.081) TCGA-D3-A2J8-06 11 124266939 124266939 G A OR8B3 Silent p.F103F 0.16 TCGA-D3-A2J8-06 11 124310621 124310621 C T OR8B8 Missense_Mutation p.D121N 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2J8-06 11 128844001 128844001 G A ARHGAP32 Intron 0.09 TCGA-D3-A2J8-06 11 20676454 20676454 C T SLC6A5 3'UTR 0.09 TCGA-D3-A2J8-06 11 2356962 2356962 G A CD81-AS1 Intron 0.10 TCGA-D3-A2J8-06 11 26569046 26569046 G A ANO3 Missense_Mutation p.G413D 0.11 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 11 26660733 26660733 G A ANO3 Missense_Mutation p.G696S 0.12 tolerated(0.52) benign(0.099) TCGA-D3-A2J8-06 11 27016165 27016165 G A FIBIN Missense_Mutation p.G31E 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2J8-06 11 45274137 45274137 G A SYT13 Silent p.L227L 0.12 TCGA-D3-A2J8-06 11 4674628 4674628 C T OR51E1 Missense_Mutation p.P291L 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 11 48347131 48347131 C T OR4C3 Silent p.A213A 0.09 TCGA-D3-A2J8-06 11 4929511 4929511 G A OR51A7 Silent p.G304G 0.09 TCGA-D3-A2J8-06 11 49598204 49598204 C T RP11-707M1.1 RNA 0.12 TCGA-D3-A2J8-06 11 5529154 5529154 G A UBQLN3 Silent p.F545F 0.11 TCGA-D3-A2J8-06 11 5529638 5529638 G A UBQLN3 Missense_Mutation p.S384L 0.09 tolerated(0.12) benign(0.004) TCGA-D3-A2J8-06 11 5530191 5530191 G A UBQLN3 Silent p.L200L 0.12 TCGA-D3-A2J8-06 11 56185662 56185662 C T OR5R1 Missense_Mutation p.G16E 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 11 56757027 56757027 C T OR5AK2 Silent p.V213V 0.11 TCGA-D3-A2J8-06 11 57319895 57319895 G A UBE2L6 Missense_Mutation p.P133L 0.06 tolerated(0.47) possibly_damaging(0.668) TCGA-D3-A2J8-06 11 57947792 57947792 G A OR9Q1 Silent p.R292R 0.13 TCGA-D3-A2J8-06 11 57982703 57982703 T C OR1S1 Missense_Mutation p.F163L 0.11 tolerated(0.24) benign(0.001) TCGA-D3-A2J8-06 11 58491913 58491913 C T GLYAT Silent p.R19R 0.19 TCGA-D3-A2J8-06 11 59622251 59622251 G A TCN1 Missense_Mutation p.S332L 0.14 tolerated(0.28) benign(0.025) TCGA-D3-A2J8-06 11 59863043 59863043 C T MS4A2 Missense_Mutation p.R217C 0.19 tolerated(0.08) probably_damaging(0.98) TCGA-D3-A2J8-06 11 619775 619775 G A CDHR5 Missense_Mutation p.T362I 0.13 tolerated(0.18) probably_damaging(0.986) TCGA-D3-A2J8-06 11 64573701 64573701 C A MEN1 Intron 0.21 TCGA-D3-A2J8-06 11 6519580 6519580 C T DNHD1 Silent p.F45F 0.12 TCGA-D3-A2J8-06 11 67166015 67166015 G A PPP1CA Silent p.A339A 0.11 TCGA-D3-A2J8-06 11 70333016 70333016 C T SHANK2 Missense_Mutation p.E1129K 0.17 deleterious(0) benign(0.013) TCGA-D3-A2J8-06 11 72416905 72416905 G A ARAP1 Missense_Mutation p.S585F 0.08 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J8-06 11 76924904 76924904 G A MYO7A Splice_Site p.X2147_splice 0.08 TCGA-D3-A2J8-06 11 77775213 77775213 G A THRSP Missense_Mutation p.E96K 0.14 tolerated(0.54) possibly_damaging(0.89) TCGA-D3-A2J8-06 11 85445395 85445395 G A SYTL2 Missense_Mutation p.S325F 0.10 deleterious(0.03) benign(0.361) TCGA-D3-A2J8-06 11 9055212 9055212 G A SCUBE2 Intron 0.12 TCGA-D3-A2J8-06 11 92086880 92086880 G A FAT3 Silent p.L534L 0.08 TCGA-D3-A2J8-06 11 92523277 92523277 G A FAT3 Missense_Mutation p.D1502N 0.13 probably_damaging(0.973) TCGA-D3-A2J8-06 11 92881928 92881928 G A SLC36A4 Silent p.I430I 0.09 TCGA-D3-A2J8-06 12 108011150 108011150 G A BTBD11 Missense_Mutation p.G723E 0.16 deleterious(0.02) probably_damaging(1) TCGA-D3-A2J8-06 12 109719588 109719588 C T FOXN4 Silent p.L306L 0.10 TCGA-D3-A2J8-06 12 111330918 111330918 C T CCDC63 Silent p.S371S 0.09 TCGA-D3-A2J8-06 12 122012474 122012474 G A KDM2B Silent p.V125V 0.08 TCGA-D3-A2J8-06 12 123482012 123482012 G A PITPNM2 Silent p.S444S 0.10 TCGA-D3-A2J8-06 12 123782562 123782562 G A SBNO1 Silent p.I1334I 0.10 TCGA-D3-A2J8-06 12 124421898 124421898 C T CCDC92 Missense_Mutation p.E235K 0.09 deleterious(0) possibly_damaging(0.716) TCGA-D3-A2J8-06 12 1299088 1299088 G A ERC1 Missense_Mutation p.E741K 0.15 deleterious(0.01) possibly_damaging(0.685) TCGA-D3-A2J8-06 12 132399957 132399957 C T ULK1 Missense_Mutation p.P534S 0.15 tolerated(0.34) benign(0.39) TCGA-D3-A2J8-06 12 132399958 132399958 C T ULK1 Missense_Mutation p.P534L 0.15 deleterious(0.02) benign(0.005) TCGA-D3-A2J8-06 12 132403804 132403804 C T ULK1 Silent p.F853F 0.13 TCGA-D3-A2J8-06 12 13716073 13716073 G A GRIN2B Missense_Mutation p.P1367S 0.10 tolerated(0.23) benign(0.008) TCGA-D3-A2J8-06 12 19665357 19665357 C T AEBP2 Missense_Mutation p.S442F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.809) TCGA-D3-A2J8-06 12 21054371 21054371 C T SLCO1B3 Missense_Mutation p.A612V 0.11 deleterious(0.02) benign(0.367) TCGA-D3-A2J8-06 12 2764372 2764372 G C CACNA1C Missense_Mutation p.Q1448H 0.16 deleterious(0.03) possibly_damaging(0.594) TCGA-D3-A2J8-06 12 32481285 32481285 C T BICD1 Silent p.I632I 0.14 TCGA-D3-A2J8-06 12 33031890 33031890 G A PKP2 Silent p.G100G 0.09 TCGA-D3-A2J8-06 12 43777753 43777753 G A ADAMTS20 Nonsense_Mutation p.Q1494* 0.15 TCGA-D3-A2J8-06 12 45410180 45410180 G A DBX2 Silent p.I303I 0.22 TCGA-D3-A2J8-06 12 47629785 47629785 C T PCED1B Silent p.L313L 0.11 TCGA-D3-A2J8-06 12 49315984 49315984 G A FKBP11 Missense_Mutation p.A130V 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A2J8-06 12 50848137 50848137 C T LARP4 Missense_Mutation p.S353L 0.10 deleterious(0) possibly_damaging(0.509) TCGA-D3-A2J8-06 12 51079696 51079696 A G DIP2B Silent p.K466K 0.12 TCGA-D3-A2J8-06 12 52282492 52282492 C T ANKRD33 Silent p.L96L 0.10 TCGA-D3-A2J8-06 12 52911920 52911920 G A KRT5 Silent p.T266T 0.08 TCGA-D3-A2J8-06 12 53647946 53647946 G T MFSD5 Nonsense_Mutation p.E550* 0.11 TCGA-D3-A2J8-06 12 54797093 54797093 G A ITGA5 Nonsense_Mutation p.R598* 0.11 TCGA-D3-A2J8-06 12 54969376 54969376 C T PDE1B Silent p.L409L 0.12 TCGA-D3-A2J8-06 12 55759573 55759573 C T OR6C75 Missense_Mutation p.P227S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D3-A2J8-06 12 56647912 56647912 G A ANKRD52 Missense_Mutation p.S282F 0.08 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J8-06 12 57975679 57975679 G A KIF5A Missense_Mutation p.G979E 0.12 tolerated_low_confidence(0.32) benign(0.003) TCGA-D3-A2J8-06 12 666915 666915 C T B4GALNT3 Missense_Mutation p.S841F 0.12 deleterious(0) probably_damaging(0.994) TCGA-D3-A2J8-06 12 68051862 68051862 A T DYRK2 Missense_Mutation p.E392V 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J8-06 12 70004285 70004285 C T LRRC10 Missense_Mutation p.D112N 0.11 tolerated(0.42) benign(0.017) TCGA-D3-A2J8-06 12 75737609 75737609 G A GLIPR1L1 Missense_Mutation p.G104E 0.14 tolerated(0.41) benign(0.005) TCGA-D3-A2J8-06 12 8982357 8982357 C T A2ML1 Silent p.F148F 0.08 TCGA-D3-A2J8-06 12 9254095 9254095 A T A2M Missense_Mutation p.I481N 0.08 deleterious(0) possibly_damaging(0.756) TCGA-D3-A2J8-06 12 978198 978198 C T WNK1 Intron 0.11 TCGA-D3-A2J8-06 12 99225828 99225828 G A ANKS1B Silent p.P955P 0.14 TCGA-D3-A2J8-06 13 101714437 101714437 C T NALCN Silent p.K1546K 0.12 TCGA-D3-A2J8-06 13 103346730 103346730 C T METTL21C Missense_Mutation p.G40E 0.12 tolerated(0.36) benign(0.004) TCGA-D3-A2J8-06 13 103346731 103346731 C T METTL21C Missense_Mutation p.G40R 0.14 tolerated(0.18) benign(0.01) TCGA-D3-A2J8-06 13 110850836 110850836 G A COL4A1 Silent p.P421P 0.08 TCGA-D3-A2J8-06 13 113513726 113513726 C T ATP11A Missense_Mutation p.P896L 0.11 deleterious(0) possibly_damaging(0.806) TCGA-D3-A2J8-06 13 19748188 19748188 G A TUBA3C Missense_Mutation p.R390C 0.14 deleterious_low_confidence(0.01) benign(0.042) TCGA-D3-A2J8-06 13 21166490 21166490 C T IFT88 Silent p.P124P 0.13 TCGA-D3-A2J8-06 13 25338447 25338447 G A RNF17 Missense_Mutation p.G36R 0.22 deleterious_low_confidence(0.01) benign(0.33) TCGA-D3-A2J8-06 13 26127989 26127989 T A ATP8A2 Missense_Mutation p.N372K 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 13 26127990 26127990 C T ATP8A2 Missense_Mutation p.L373F 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 13 29600115 29600115 C T MTUS2 Missense_Mutation p.S437F 0.16 deleterious(0.05) benign(0.01) TCGA-D3-A2J8-06 13 32355829 32355829 A T RXFP2 Silent p.I269I 0.10 TCGA-D3-A2J8-06 13 33638031 33638031 C T KL Missense_Mutation p.S916L 0.09 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A2J8-06 13 38211475 38211475 C T TRPC4 Silent p.Q838Q 0.14 TCGA-D3-A2J8-06 13 39266139 39266139 C T FREM2 Missense_Mutation p.P1553L 0.11 deleterious(0.01) benign(0.183) TCGA-D3-A2J8-06 13 39597248 39597248 G A PROSER1 Missense_Mutation p.P195L 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 13 76393596 76393596 G A LMO7 Missense_Mutation p.R478K 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A2J8-06 13 77570195 77570195 T A CLN5 Missense_Mutation p.F215L 0.10 deleterious(0.05) benign(0.23) TCGA-D3-A2J8-06 14 101493194 101493194 C T MIR329-1 RNA 0.12 TCGA-D3-A2J8-06 14 106691718 106691718 C T IGHV3-21 Missense_Mutation p.M102I 0.10 deleterious_low_confidence(0.01) benign(0.235) TCGA-D3-A2J8-06 14 19559070 19559070 G A POTEG Missense_Mutation p.G239E 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A2J8-06 14 20215793 20215793 C T OR4Q3 Silent p.F69F 0.10 TCGA-D3-A2J8-06 14 20612172 20612172 C T OR4N5 Missense_Mutation p.S93F 0.08 deleterious(0) probably_damaging(0.933) TCGA-D3-A2J8-06 14 20692721 20692721 C T OR11H6 Missense_Mutation p.P285S 0.09 tolerated(0.59) benign(0.079) TCGA-D3-A2J8-06 14 22090529 22090529 G A TRAV1-1 Silent p.G45G 0.12 TCGA-D3-A2J8-06 14 22205078 22205078 G A TRAV4 Missense_Mutation p.D48N 0.11 deleterious(0) benign(0.154) TCGA-D3-A2J8-06 14 35224118 35224118 G A BAZ1A Silent p.V1463V 0.11 TCGA-D3-A2J8-06 14 57269016 57269016 C T OTX2 Missense_Mutation p.G111R 0.07 deleterious(0.01) possibly_damaging(0.459) TCGA-D3-A2J8-06 14 64457194 64457194 G A SYNE2 Missense_Mutation p.M793I 0.10 benign(0.04) TCGA-D3-A2J8-06 14 70634328 70634328 C T SLC8A3 Missense_Mutation p.R271Q 0.08 tolerated(0.13) benign(0.181) TCGA-D3-A2J8-06 14 70634453 70634453 G A SLC8A3 Silent p.V229V 0.10 TCGA-D3-A2J8-06 14 71227825 71227825 G A MAP3K9 Missense_Mutation p.R299W 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 14 75248574 75248574 C T YLPM1 Missense_Mutation p.L610F 0.15 unknown(0) TCGA-D3-A2J8-06 14 77750143 77750143 G A POMT2 Silent p.I550I 0.07 TCGA-D3-A2J8-06 14 81554364 81554364 A G TSHR Silent p.L128L 0.19 TCGA-D3-A2J8-06 14 93728006 93728006 G A BTBD7 Silent p.I463I 0.13 TCGA-D3-A2J8-06 14 96134850 96134850 G A TCL6 Intron 0.08 TCGA-D3-A2J8-06 15 22369154 22369154 C T OR4M2 Silent p.F193F 0.08 TCGA-D3-A2J8-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.07 deleterious(0) probably_damaging(0.931) TCGA-D3-A2J8-06 15 26806161 26806161 C T GABRB3 Missense_Mutation p.G333E 0.11 deleterious(0) probably_damaging(0.938) TCGA-D3-A2J8-06 15 40581030 40581030 G A PLCB2 Silent p.T1148T 0.10 TCGA-D3-A2J8-06 15 41340454 41340454 G A INO80 Missense_Mutation p.P866L 0.12 tolerated(0.4) benign(0.006) TCGA-D3-A2J8-06 15 43714221 43714221 G A TP53BP1 Missense_Mutation p.S1311F 0.08 deleterious(0) probably_damaging(0.975) TCGA-D3-A2J8-06 15 44028410 44028410 G A RNU6-354P 5'Flank 0.09 TCGA-D3-A2J8-06 15 50158607 50158607 G A ATP8B4 Silent p.S1034S 0.14 TCGA-D3-A2J8-06 15 51634223 51634223 G A GLDN Missense_Mutation p.M114I 0.08 tolerated(0.08) benign(0.026) TCGA-D3-A2J8-06 15 63000710 63000710 C T TLN2 Missense_Mutation p.P728S 0.09 deleterious(0.03) possibly_damaging(0.899) TCGA-D3-A2J8-06 15 73635897 73635897 G A HCN4 Silent p.F346F 0.10 TCGA-D3-A2J8-06 15 75042883 75042883 C T CYP1A2 Silent p.V268V 0.09 TCGA-D3-A2J8-06 15 76430217 76430217 G A C15orf27 Missense_Mutation p.E70K 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A2J8-06 15 78780592 78780592 G A IREB2 Missense_Mutation p.R622H 0.10 deleterious(0) possibly_damaging(0.892) TCGA-D3-A2J8-06 15 79317774 79317774 G A RASGRF1 Missense_Mutation p.T475I 0.10 deleterious(0.02) benign(0.043) TCGA-D3-A2J8-06 15 83805341 83805341 G A TM6SF1 Missense_Mutation p.V344I 0.08 tolerated(0.34) benign(0.003) TCGA-D3-A2J8-06 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.18 deleterious(0) probably_damaging(0.976) TCGA-D3-A2J8-06 16 1260800 1260800 G A CACNA1H Missense_Mutation p.G1351E 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 16 1779144 1779144 C T MAPK8IP3 Missense_Mutation p.R149W 0.20 deleterious(0) probably_damaging(0.978) TCGA-D3-A2J8-06 16 19490830 19490830 C T TMC5 Silent p.F749F 0.08 TCGA-D3-A2J8-06 16 20384393 20384393 C T PDILT Missense_Mutation p.E245K 0.13 tolerated(0.23) benign(0.173) TCGA-D3-A2J8-06 16 2088051 2088051 C T SLC9A3R2 3'UTR 0.62 TCGA-D3-A2J8-06 16 21136651 21136651 C T DNAH3 Missense_Mutation p.E417K 0.08 tolerated(0.78) benign(0.001) TCGA-D3-A2J8-06 16 21136652 21136652 C T DNAH3 Silent p.K416K 0.08 TCGA-D3-A2J8-06 16 23678498 23678498 C G DCTN5 3'UTR 0.12 TCGA-D3-A2J8-06 16 28993278 28993278 C T SPNS1 Missense_Mutation p.S289F 0.19 deleterious(0.02) benign(0.117) TCGA-D3-A2J8-06 16 29998717 29998717 C T TAOK2 Missense_Mutation p.P1042S 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A2J8-06 16 3100328 3100328 G A MMP25 Missense_Mutation p.A148T 0.14 tolerated(0.22) benign(0.032) TCGA-D3-A2J8-06 16 31073072 31073072 G A ZNF668 Nonsense_Mutation p.W87* 0.09 TCGA-D3-A2J8-06 16 48174784 48174784 C T ABCC12 Silent p.G157G 0.12 TCGA-D3-A2J8-06 16 48244950 48244950 C T ABCC11 Missense_Mutation p.G506E 0.16 tolerated(0.77) benign(0.005) TCGA-D3-A2J8-06 16 50733428 50733428 C T NOD2 Nonsense_Mutation p.Q35* 0.08 TCGA-D3-A2J8-06 16 5075593 5075593 C G NAGPA Missense_Mutation p.R478S 0.12 benign(0.012) TCGA-D3-A2J8-06 16 5075614 5075614 C G NAGPA Missense_Mutation p.L471F 0.13 benign(0.033) TCGA-D3-A2J8-06 16 54967364 54967364 C T IRX5 Missense_Mutation p.S344L 0.18 deleterious(0.03) unknown(0) TCGA-D3-A2J8-06 16 57113007 57113007 C T NLRC5 Silent p.A1709A 0.08 TCGA-D3-A2J8-06 16 57738800 57738800 G A CCDC135 Missense_Mutation p.E238K 0.12 tolerated(0.33) benign(0.012) TCGA-D3-A2J8-06 16 57785579 57785579 C T KATNB1 Silent p.L153L 0.12 TCGA-D3-A2J8-06 16 66413217 66413217 C T CDH5 Intron 0.11 TCGA-D3-A2J8-06 16 66943997 66943997 C T CDH16 Splice_Site p.X723_splice 0.09 TCGA-D3-A2J8-06 16 67221661 67221661 C T EXOC3L1 Silent p.L169L 0.12 TCGA-D3-A2J8-06 16 67261034 67261034 G A TMEM208 5'UTR 0.08 TCGA-D3-A2J8-06 16 71482000 71482000 G A ZNF23 Missense_Mutation p.S643F 0.09 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-D3-A2J8-06 16 71683447 71683447 C T PHLPP2 Silent p.L1106L 0.11 TCGA-D3-A2J8-06 16 74425677 74425677 C T NPIPB15 Missense_Mutation p.P344L 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A2J8-06 16 74542786 74542786 G A GLG1 Missense_Mutation p.P170L 0.08 tolerated(0.22) benign(0.019) TCGA-D3-A2J8-06 16 77317856 77317856 G A ADAMTS18 Silent p.I1221I 0.11 TCGA-D3-A2J8-06 16 81303947 81303947 G A BCMO1 Missense_Mutation p.D343N 0.15 tolerated(0.21) benign(0.013) TCGA-D3-A2J8-06 16 82131706 82131706 G A HSD17B2 Missense_Mutation p.E277K 0.16 tolerated(0.12) benign(0.07) TCGA-D3-A2J8-06 16 84520567 84520567 G A TLDC1 Silent p.L210L 0.12 TCGA-D3-A2J8-06 16 85814035 85814035 G A EMC8 Silent p.I141I 0.12 TCGA-D3-A2J8-06 16 89703005 89703005 C T DPEP1 Silent p.S145S 0.09 TCGA-D3-A2J8-06 17 10209806 10209806 C T MYH13 Silent p.G1812G 0.07 TCGA-D3-A2J8-06 17 10258014 10258014 C T MYH13 Missense_Mutation p.E330K 0.10 deleterious(0) probably_damaging(0.994) TCGA-D3-A2J8-06 17 10304036 10304036 C T MYH8 Missense_Mutation p.E1136K 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 17 10307677 10307677 C T MYH8 Silent p.E886E 0.14 TCGA-D3-A2J8-06 17 10317334 10317334 G A MYH8 Silent p.F344F 0.10 TCGA-D3-A2J8-06 17 10351220 10351220 T A MYH4 Missense_Mutation p.N1627I 0.11 deleterious(0) probably_damaging(0.936) TCGA-D3-A2J8-06 17 10356585 10356585 C T MYH4 Missense_Mutation p.E999K 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2J8-06 17 10362664 10362664 G A MYH4 Silent p.F497F 0.08 TCGA-D3-A2J8-06 17 10728815 10728815 C T PIRT Missense_Mutation p.E50K 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A2J8-06 17 11666863 11666863 G A DNAH9 Missense_Mutation p.E2368K 0.12 benign(0.051) TCGA-D3-A2J8-06 17 12656507 12656507 C T MYOCD Silent p.S634S 0.11 TCGA-D3-A2J8-06 17 18155806 18155806 G A FLII Missense_Mutation p.H360Y 0.08 tolerated(0.07) possibly_damaging(0.463) TCGA-D3-A2J8-06 17 18682422 18682422 G A FBXW10 Silent p.V990V 0.14 TCGA-D3-A2J8-06 17 27024697 27024697 C T SUPT6H Silent p.A1423A 0.13 TCGA-D3-A2J8-06 17 37439089 37439089 C T FBXL20 Missense_Mutation p.E172K 0.09 tolerated(0.22) benign(0.292) TCGA-D3-A2J8-06 17 39156007 39156007 G A KRTAP3-2 Silent p.P33P 0.15 TCGA-D3-A2J8-06 17 39593644 39593644 C T KRT38 3'UTR 0.16 TCGA-D3-A2J8-06 17 40474352 40474352 G A STAT3 Silent p.F683F 0.11 TCGA-D3-A2J8-06 17 43009476 43009476 G A KIF18B Missense_Mutation p.S446F 0.16 tolerated(0.42) possibly_damaging(0.493) TCGA-D3-A2J8-06 17 46847099 46847099 T G TTLL6 Missense_Mutation p.N801H 0.20 tolerated(0.36) benign(0.005) TCGA-D3-A2J8-06 17 47119628 47119628 C T IGF2BP1 Silent p.N322N 0.14 TCGA-D3-A2J8-06 17 48752800 48752800 G A ABCC3 Missense_Mutation p.D893N 0.11 tolerated(0.16) benign(0.142) TCGA-D3-A2J8-06 17 54431343 54431343 C T ANKFN1 Silent p.I182I 0.17 TCGA-D3-A2J8-06 17 61498732 61498732 C T TANC2 Missense_Mutation p.P1797S 0.12 tolerated_low_confidence(0.17) benign(0.003) TCGA-D3-A2J8-06 17 61619792 61619792 G A KCNH6 Silent p.R715R 0.22 TCGA-D3-A2J8-06 17 61987861 61987861 G A CSHL1 Silent p.F75F 0.12 TCGA-D3-A2J8-06 17 71189274 71189274 C T COG1 Silent p.F22F 0.39 TCGA-D3-A2J8-06 17 73567141 73567141 C T LLGL2 Silent p.F712F 0.17 TCGA-D3-A2J8-06 17 7366608 7366608 C T ZBTB4 Missense_Mutation p.G565R 0.18 probably_damaging(0.99) TCGA-D3-A2J8-06 17 73887947 73887947 G A TRIM65 Missense_Mutation p.P311L 0.23 tolerated(0.1) benign(0.059) TCGA-D3-A2J8-06 17 7673685 7673685 G A DNAH2 Missense_Mutation p.E1353K 0.12 probably_damaging(0.923) TCGA-D3-A2J8-06 17 7684361 7684361 T C DNAH2 Missense_Mutation p.V2002A 0.08 possibly_damaging(0.593) TCGA-D3-A2J8-06 17 79891052 79891052 G A PYCR1 3'UTR 0.10 TCGA-D3-A2J8-06 17 8243450 8243450 G A ODF4 Silent p.R27R 0.16 TCGA-D3-A2J8-06 18 12264320 12264320 C T CIDEA Silent p.L66L 0.18 TCGA-D3-A2J8-06 18 13056565 13056565 T A CEP192 Missense_Mutation p.S1326T 0.15 tolerated(0.48) benign(0.021) TCGA-D3-A2J8-06 18 22804972 22804972 G A ZNF521 Silent p.S970S 0.13 TCGA-D3-A2J8-06 18 28651772 28651772 G A DSC2 Missense_Mutation p.P642S 0.17 tolerated(0.34) benign(0.003) TCGA-D3-A2J8-06 18 29848148 29848148 T C GAREM Missense_Mutation p.M773V 0.10 tolerated(1) benign(0) TCGA-D3-A2J8-06 18 31325349 31325349 G A ASXL3 Missense_Mutation p.G1846E 0.11 probably_damaging(1) TCGA-D3-A2J8-06 18 47431107 47431107 G A MYO5B Missense_Mutation p.R836C 0.11 deleterious(0.02) benign(0.029) TCGA-D3-A2J8-06 18 51855788 51855788 T A STARD6 Missense_Mutation p.E136D 0.12 tolerated(0.61) benign(0.004) TCGA-D3-A2J8-06 18 71816207 71816207 G C TIMM21 Missense_Mutation p.R55T 0.07 tolerated(0.47) benign(0.081) TCGA-D3-A2J8-06 18 76755016 76755016 C T SALL3 Missense_Mutation p.L1009F 0.13 deleterious(0.01) possibly_damaging(0.697) TCGA-D3-A2J8-06 19 11915420 11915420 C T ZNF491 5'UTR 0.11 TCGA-D3-A2J8-06 19 14139177 14139177 G A RLN3 Missense_Mutation p.R54Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 19 15052342 15052342 C T OR7C2 Silent p.L14L 0.16 TCGA-D3-A2J8-06 19 15124559 15124559 G A CCDC105 Missense_Mutation p.D216N 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A2J8-06 19 15571920 15571920 C T RASAL3 Missense_Mutation p.G186E 0.18 tolerated(0.09) probably_damaging(0.991) TCGA-D3-A2J8-06 19 15806809 15806809 C T CYP4F12 Silent p.P393P 0.19 TCGA-D3-A2J8-06 19 15852774 15852774 G A OR10H3 Missense_Mutation p.G191E 0.12 tolerated(0.07) benign(0.049) TCGA-D3-A2J8-06 19 17735706 17735706 C T UNC13A Missense_Mutation p.E1377K 0.23 deleterious(0) possibly_damaging(0.676) TCGA-D3-A2J8-06 19 17875220 17875220 G A FCHO1 Silent p.A52A 0.14 TCGA-D3-A2J8-06 19 17888970 17888970 G A FCHO1 Silent p.E428E 0.08 TCGA-D3-A2J8-06 19 18192971 18192971 G A IL12RB1 Silent p.F76F 0.15 TCGA-D3-A2J8-06 19 22952096 22952096 C T ZNF99 Missense_Mutation p.E12K 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A2J8-06 19 30936037 30936037 C T ZNF536 Missense_Mutation p.A523V 0.08 tolerated(0.08) benign(0.437) TCGA-D3-A2J8-06 19 31039268 31039268 C T ZNF536 Silent p.F914F 0.11 TCGA-D3-A2J8-06 19 36278928 36278928 C T ARHGAP33 Missense_Mutation p.A993V 0.13 deleterious_low_confidence(0.03) benign(0.227) TCGA-D3-A2J8-06 19 36349648 36349648 C T KIRREL2 Missense_Mutation p.S135F 0.10 tolerated(0.11) possibly_damaging(0.767) TCGA-D3-A2J8-06 19 36939837 36939837 A G ZNF566 3'UTR 0.23 TCGA-D3-A2J8-06 19 37129927 37129927 G A ZNF461 Silent p.P440P 0.09 TCGA-D3-A2J8-06 19 37975219 37975219 C T ZNF570 Missense_Mutation p.S232F 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A2J8-06 19 43093613 43093613 G A CEACAM8 Silent p.V233V 0.10 TCGA-D3-A2J8-06 19 43097973 43097973 C T CEACAM8 Silent p.G48G 0.11 TCGA-D3-A2J8-06 19 4318403 4318403 C T FSD1 Missense_Mutation p.S287F 0.14 tolerated(0.15) possibly_damaging(0.529) TCGA-D3-A2J8-06 19 4333715 4333715 G A STAP2 Silent p.L91L 0.11 TCGA-D3-A2J8-06 19 43421966 43421966 C T PSG6 5'UTR 0.09 TCGA-D3-A2J8-06 19 43579626 43579626 C T PSG2 Missense_Mutation p.E197K 0.08 tolerated(0.93) benign(0.002) TCGA-D3-A2J8-06 19 43680107 43680107 C T PSG5 Silent p.T208T 0.11 TCGA-D3-A2J8-06 19 43699294 43699294 G A PSG4 Missense_Mutation p.P281S 0.12 tolerated(0.08) possibly_damaging(0.876) TCGA-D3-A2J8-06 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.10 tolerated(0.29) possibly_damaging(0.621) TCGA-D3-A2J8-06 19 44660662 44660662 C T ZNF234 Missense_Mutation p.L165F 0.09 tolerated(0.44) probably_damaging(0.913) TCGA-D3-A2J8-06 19 44934694 44934694 C T ZNF229 Missense_Mutation p.E88K 0.11 deleterious(0.04) probably_damaging(0.968) TCGA-D3-A2J8-06 19 45015211 45015211 C T CEACAM20 Intron 0.11 TCGA-D3-A2J8-06 19 45211152 45211152 G A CEACAM16 Missense_Mutation p.M320I 0.08 tolerated(0.23) benign(0.119) TCGA-D3-A2J8-06 19 4538663 4538663 G A LRG1 Silent p.F111F 0.09 TCGA-D3-A2J8-06 19 46307762 46307762 G A RSPH6A Silent p.V467V 0.12 TCGA-D3-A2J8-06 19 46663975 46663975 C T IGFL2 Silent p.L71L 0.10 TCGA-D3-A2J8-06 19 48342936 48342936 C T CRX Silent p.S204S 0.11 TCGA-D3-A2J8-06 19 49248480 49248480 C T IZUMO1 Missense_Mutation p.D101N 0.10 tolerated(0.34) benign(0.079) TCGA-D3-A2J8-06 19 51410168 51410168 C T KLK4 3'UTR 0.07 TCGA-D3-A2J8-06 19 51768682 51768682 C T SIGLECL1 Missense_Mutation p.S28F 0.09 deleterious(0) possibly_damaging(0.877) TCGA-D3-A2J8-06 19 52272426 52272426 G A FPR2 Missense_Mutation p.G172E 0.09 tolerated(0.08) benign(0.443) TCGA-D3-A2J8-06 19 52393992 52393992 G A ZNF649 Missense_Mutation p.P466L 0.12 deleterious(0.02) benign(0.086) TCGA-D3-A2J8-06 19 53085900 53085900 C T ZNF701 Silent p.F262F 0.15 TCGA-D3-A2J8-06 19 53762333 53762333 G A VN1R2 Nonsense_Mutation p.W235* 0.17 TCGA-D3-A2J8-06 19 5456054 5456054 C T ZNRF4 Silent p.I184I 0.13 TCGA-D3-A2J8-06 19 54760148 54760148 C T LILRB5 Missense_Mutation p.G138E 0.12 tolerated(0.07) possibly_damaging(0.64) TCGA-D3-A2J8-06 19 54849442 54849442 G A LILRA4 Silent p.T140T 0.10 TCGA-D3-A2J8-06 19 55107271 55107271 C T LILRA1 Missense_Mutation p.L277F 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-D3-A2J8-06 19 55493973 55493973 G A NLRP2 Missense_Mutation p.D303N 0.12 deleterious(0.01) probably_damaging(1) TCGA-D3-A2J8-06 19 56241279 56241279 C T NLRP9 Missense_Mutation p.E638K 0.15 deleterious(0.01) benign(0.164) TCGA-D3-A2J8-06 19 56393070 56393070 T G NLRP4 3'UTR 0.21 TCGA-D3-A2J8-06 19 56424097 56424097 C T NLRP13 Silent p.T362T 0.13 TCGA-D3-A2J8-06 19 57176174 57176174 G A ZNF835 Silent p.I131I 0.25 TCGA-D3-A2J8-06 19 57647152 57647152 G A ZIM3 Missense_Mutation p.H185Y 0.12 tolerated(0.1) possibly_damaging(0.769) TCGA-D3-A2J8-06 19 58290215 58290215 C T ZNF586 Missense_Mutation p.P87L 0.13 tolerated(1) benign(0.188) TCGA-D3-A2J8-06 19 58772598 58772598 A G ZNF544 Missense_Mutation p.D209G 0.20 tolerated(0.42) benign(0) TCGA-D3-A2J8-06 19 9065721 9065721 G A MUC16 Missense_Mutation p.S7242F 0.10 unknown(0) TCGA-D3-A2J8-06 19 9066519 9066519 G A MUC16 Missense_Mutation p.P6976L 0.19 unknown(0) TCGA-D3-A2J8-06 19 9072723 9072723 G A MUC16 Missense_Mutation p.S4908L 0.10 unknown(0) TCGA-D3-A2J8-06 19 9087495 9087495 C T MUC16 Silent p.G1440G 0.12 TCGA-D3-A2J8-06 19 9089598 9089598 C T MUC16 Silent p.A739A 0.14 TCGA-D3-A2J8-06 19 9213846 9213846 G A OR7G2 Missense_Mutation p.P46L 0.09 tolerated(0.11) benign(0.017) TCGA-D3-A2J8-06 1 109556543 109556543 G A WDR47 Missense_Mutation p.R83C 0.24 deleterious(0) possibly_damaging(0.556) TCGA-D3-A2J8-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.20 deleterious(0) benign(0.109) TCGA-D3-A2J8-06 1 12854553 12854553 C T PRAMEF1 Silent p.F259F 0.20 TCGA-D3-A2J8-06 1 12907694 12907694 C T HNRNPCL1 Missense_Mutation p.G150E 0.26 tolerated(1) benign(0.141) TCGA-D3-A2J8-06 1 12919144 12919144 C T PRAMEF2 Missense_Mutation p.R94C 0.19 tolerated(0.09) possibly_damaging(0.629) TCGA-D3-A2J8-06 1 12954644 12954644 C T PRAMEF10 Nonsense_Mutation p.W213* 0.22 TCGA-D3-A2J8-06 1 150429989 150429989 C T RPRD2 Missense_Mutation p.R366C 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A2J8-06 1 150551372 150551372 G A MCL1 Missense_Mutation p.T212I 0.18 deleterious(0) possibly_damaging(0.54) TCGA-D3-A2J8-06 1 151108092 151108092 C T SEMA6C Missense_Mutation p.E470K 0.08 deleterious(0) benign(0.273) TCGA-D3-A2J8-06 1 151340775 151340775 G A SELENBP1 Silent p.I127I 0.10 TCGA-D3-A2J8-06 1 152085441 152085441 A G TCHH Silent p.A84A 0.09 TCGA-D3-A2J8-06 1 152192792 152192792 C T HRNR Missense_Mutation p.S438N 0.08 unknown(0) TCGA-D3-A2J8-06 1 153029007 153029007 G A SPRR2A Missense_Mutation p.P69S 0.10 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2J8-06 1 153657492 153657492 G A NPR1 Missense_Mutation p.E513K 0.15 deleterious(0.01) possibly_damaging(0.722) TCGA-D3-A2J8-06 1 153713833 153713833 C T INTS3 Nonsense_Mutation p.Q103* 0.09 TCGA-D3-A2J8-06 1 155234037 155234037 G A CLK2 Missense_Mutation p.P400S 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 1 156813018 156813018 G A INSRR Silent p.V968V 0.18 TCGA-D3-A2J8-06 1 156814413 156814413 C T INSRR Missense_Mutation p.A860T 0.23 tolerated(0.32) benign(0.383) TCGA-D3-A2J8-06 1 156814414 156814414 C T INSRR Silent p.E859E 0.23 TCGA-D3-A2J8-06 1 158300829 158300829 G A CD1B Missense_Mutation p.H29Y 0.11 tolerated(0.31) probably_damaging(0.932) TCGA-D3-A2J8-06 1 158548961 158548961 C T OR10X1 Silent p.R243R 0.25 TCGA-D3-A2J8-06 1 158656393 158656393 G A SPTA1 5'UTR 0.36 TCGA-D3-A2J8-06 1 159277548 159277548 G A FCER1A Silent p.E200E 0.10 TCGA-D3-A2J8-06 1 159558147 159558147 C T APCS Silent p.F107F 0.18 TCGA-D3-A2J8-06 1 160520779 160520779 C T CD84 Silent p.R286R 0.06 TCGA-D3-A2J8-06 1 161029468 161029468 C T ARHGAP30 Missense_Mutation p.E46K 0.13 tolerated(0.15) possibly_damaging(0.604) TCGA-D3-A2J8-06 1 161197992 161197992 C T TOMM40L Silent p.H167H 0.15 TCGA-D3-A2J8-06 1 169346025 169346025 C T BLZF1 Silent p.I92I 0.09 TCGA-D3-A2J8-06 1 173569289 173569289 G A SLC9C2 Silent p.F65F 0.08 TCGA-D3-A2J8-06 1 176015319 176015319 G A RFWD2 Silent p.I473I 0.09 TCGA-D3-A2J8-06 1 176679218 176679218 G A PAPPA2 Missense_Mutation p.G1186E 0.11 deleterious(0.05) benign(0.194) TCGA-D3-A2J8-06 1 176983952 176983952 G A ASTN1 Missense_Mutation p.R500W 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J8-06 1 178834394 178834394 C A ANGPTL1 Missense_Mutation p.R173M 0.09 deleterious(0) possibly_damaging(0.806) TCGA-D3-A2J8-06 1 179815703 179815703 C T TOR1AIP2 Missense_Mutation p.E306K 0.08 tolerated(0.21) probably_damaging(0.999) TCGA-D3-A2J8-06 1 181701992 181701992 C T CACNA1E Missense_Mutation p.R924C 0.11 deleterious(0) possibly_damaging(0.689) TCGA-D3-A2J8-06 1 181725156 181725156 G A CACNA1E Missense_Mutation p.E1352K 0.16 deleterious(0.01) possibly_damaging(0.893) TCGA-D3-A2J8-06 1 181727953 181727953 C T CACNA1E Silent p.T1518T 0.09 TCGA-D3-A2J8-06 1 184764533 184764533 G A FAM129A Missense_Mutation p.P789S 0.10 deleterious_low_confidence(0.04) benign(0.099) TCGA-D3-A2J8-06 1 185972948 185972948 C T HMCN1 Missense_Mutation p.P1483S 0.11 probably_damaging(0.999) TCGA-D3-A2J8-06 1 190234128 190234128 C T BRINP3 Missense_Mutation p.G162E 0.15 tolerated_low_confidence(0.36) benign(0.112) TCGA-D3-A2J8-06 1 19166281 19166281 T A TAS1R2 Missense_Mutation p.T778S 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2J8-06 1 196952150 196952150 C T CFHR5 Missense_Mutation p.S65F 0.11 deleterious(0.04) possibly_damaging(0.726) TCGA-D3-A2J8-06 1 197404357 197404357 G A CRB1 Missense_Mutation p.E1122K 0.09 tolerated(0.25) benign(0.008) TCGA-D3-A2J8-06 1 200880682 200880682 C T C1orf106 Missense_Mutation p.P354L 0.10 tolerated(0.19) benign(0.019) TCGA-D3-A2J8-06 1 201009757 201009757 G A CACNA1S Missense_Mutation p.P1740L 0.25 tolerated_low_confidence(0.14) benign(0.001) TCGA-D3-A2J8-06 1 201825035 201825035 C T IPO9 Silent p.I365I 0.12 TCGA-D3-A2J8-06 1 201869306 201869306 C T LMOD1 Missense_Mutation p.E279K 0.12 benign(0.002) TCGA-D3-A2J8-06 1 203689718 203689718 C T ATP2B4 Silent p.I816I 0.20 TCGA-D3-A2J8-06 1 205034331 205034331 C T CNTN2 Silent p.L546L 0.09 TCGA-D3-A2J8-06 1 205893549 205893549 G A SLC26A9 Silent p.V486V 0.14 TCGA-D3-A2J8-06 1 205904826 205904826 G A SLC26A9 Silent p.F41F 0.11 TCGA-D3-A2J8-06 1 207273143 207273143 C T C4BPB Nonsense_Mutation p.Q210* 0.10 TCGA-D3-A2J8-06 1 207641876 207641876 C T CR2 Silent p.F150F 0.33 TCGA-D3-A2J8-06 1 209796840 209796840 C T LAMB3 Intron 0.12 TCGA-D3-A2J8-06 1 215848644 215848644 C T USH2A Silent p.Q4203Q 0.12 TCGA-D3-A2J8-06 1 222716972 222716972 G A HHIPL2 Missense_Mutation p.S294L 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 1 222716994 222716994 G A HHIPL2 Missense_Mutation p.R287C 0.12 deleterious(0.03) probably_damaging(0.939) TCGA-D3-A2J8-06 1 225718287 225718287 G A ENAH Missense_Mutation p.P135S 0.08 deleterious(0) unknown(0) TCGA-D3-A2J8-06 1 229623326 229623326 G A NUP133 Missense_Mutation p.P410L 0.08 deleterious(0) benign(0.225) TCGA-D3-A2J8-06 1 232942478 232942478 G A MAP10 Missense_Mutation p.R570K 0.10 tolerated(0.05) benign(0.037) TCGA-D3-A2J8-06 1 234596109 234596109 G A TARBP1 Missense_Mutation p.T478I 0.10 deleterious(0.02) possibly_damaging(0.572) TCGA-D3-A2J8-06 1 237780696 237780696 C T RYR2 Silent p.F1942F 0.12 TCGA-D3-A2J8-06 1 240071543 240071543 G A CHRM3 Silent p.E264E 0.13 TCGA-D3-A2J8-06 1 24424448 24424448 C T MYOM3 Missense_Mutation p.G237D 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A2J8-06 1 247751905 247751905 C T OR2G2 Missense_Mutation p.P82S 0.31 deleterious(0) probably_damaging(0.994) TCGA-D3-A2J8-06 1 247875903 247875903 G A OR6F1 Missense_Mutation p.S52F 0.13 deleterious(0) benign(0.142) TCGA-D3-A2J8-06 1 248402452 248402452 C T OR2M4 Silent p.I74I 0.07 TCGA-D3-A2J8-06 1 248487187 248487187 C T OR2M7 Missense_Mutation p.M228I 0.08 deleterious(0.02) benign(0.25) TCGA-D3-A2J8-06 1 248525014 248525014 C T OR2T4 Silent p.F44F 0.18 TCGA-D3-A2J8-06 1 248525317 248525317 C T OR2T4 Silent p.F145F 0.14 TCGA-D3-A2J8-06 1 248570111 248570111 G A OR2T1 Silent p.L272L 0.22 TCGA-D3-A2J8-06 1 248616729 248616729 C T OR2T2 Missense_Mutation p.P211S 0.08 deleterious(0) possibly_damaging(0.713) TCGA-D3-A2J8-06 1 28595748 28595748 C T SESN2 Missense_Mutation p.P49S 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2J8-06 1 40775782 40775782 C T COL9A2 Splice_Site p.X264_splice 0.14 TCGA-D3-A2J8-06 1 42628607 42628607 G A GUCA2A Silent p.I106I 0.20 TCGA-D3-A2J8-06 1 44820606 44820606 G A ERI3 Silent p.L31L 0.28 TCGA-D3-A2J8-06 1 46810568 46810568 C T NSUN4 Silent p.I63I 0.30 TCGA-D3-A2J8-06 1 47515784 47515784 C T CYP4X1 Missense_Mutation p.H490Y 0.16 deleterious(0.02) benign(0.016) TCGA-D3-A2J8-06 1 47564786 47564786 C T CYP4Z1 Silent p.F299F 0.20 TCGA-D3-A2J8-06 1 57347218 57347218 C T C8A Nonsense_Mutation p.R189* 0.27 TCGA-D3-A2J8-06 1 57480937 57480937 G A DAB1 Missense_Mutation p.P355S 0.20 tolerated(0.11) benign(0.197) TCGA-D3-A2J8-06 1 6206398 6206398 C T CHD5 Missense_Mutation p.G559E 0.25 tolerated(0.19) benign(0.028) TCGA-D3-A2J8-06 1 71418655 71418655 C T PTGER3 Missense_Mutation p.E398K 0.18 tolerated_low_confidence(0.13) benign(0) TCGA-D3-A2J8-06 1 90399799 90399799 C T LRRC8D Missense_Mutation p.P391L 0.16 deleterious(0) probably_damaging(0.937) TCGA-D3-A2J8-06 20 10033912 10033912 A T ANKEF1 Nonsense_Mutation p.K675* 0.11 TCGA-D3-A2J8-06 20 10626702 10626702 C T JAG1 Missense_Mutation p.R639K 0.09 tolerated(0.88) benign(0.001) TCGA-D3-A2J8-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.11 tolerated(0.25) probably_damaging(0.996) TCGA-D3-A2J8-06 20 1552569 1552569 C T SIRPB1 Nonsense_Mutation p.W183* 0.10 TCGA-D3-A2J8-06 20 21689274 21689274 C T PAX1 Missense_Mutation p.P332L 0.14 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-D3-A2J8-06 20 29896384 29896384 G A DEFB116 Missense_Mutation p.S2L 0.09 deleterious(0.02) possibly_damaging(0.686) TCGA-D3-A2J8-06 20 3127433 3127433 A G FASTKD5 Missense_Mutation p.S762P 0.12 tolerated(0.42) benign(0.014) TCGA-D3-A2J8-06 20 31607505 31607505 C T BPIFB2 Silent p.V343V 0.16 TCGA-D3-A2J8-06 20 33330467 33330467 G A NCOA6 Missense_Mutation p.P1198L 0.10 possibly_damaging(0.694) TCGA-D3-A2J8-06 20 33568416 33568416 C T MYH7B Silent p.P168P 0.09 TCGA-D3-A2J8-06 20 34583006 34583006 C T CNBD2 Missense_Mutation p.S301F 0.08 tolerated(0.23) benign(0.031) TCGA-D3-A2J8-06 20 3683950 3683950 G A SIGLEC1 Silent p.T374T 0.10 TCGA-D3-A2J8-06 20 36938957 36938957 G A BPI Missense_Mutation p.G151S 0.10 tolerated(0.08) probably_damaging(0.914) TCGA-D3-A2J8-06 20 40052213 40052213 C T CHD6 Missense_Mutation p.D1492N 0.10 deleterious(0.01) possibly_damaging(0.907) TCGA-D3-A2J8-06 20 5294996 5294996 T C PROKR2 Missense_Mutation p.N7S 0.09 tolerated_low_confidence(0.8) benign(0.001) TCGA-D3-A2J8-06 20 56093858 56093858 C T CTCFL Missense_Mutation p.E339K 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 20 61835042 61835042 G A YTHDF1 Missense_Mutation p.P84S 0.11 tolerated(0.1) probably_damaging(0.96) TCGA-D3-A2J8-06 20 9538306 9538306 C T PAK7 Silent p.V564V 0.08 TCGA-D3-A2J8-06 21 31964811 31964811 A G KRTAP6-3 Missense_Mutation p.Y9C 0.08 unknown(0) TCGA-D3-A2J8-06 21 38997413 38997413 G A KCNJ6 3'UTR 0.14 TCGA-D3-A2J8-06 21 46058021 46058021 C T KRTAP10-10 Silent p.L229L 0.09 TCGA-D3-A2J8-06 22 17288683 17288683 C T XKR3 Missense_Mutation p.R94K 0.08 tolerated(0.24) benign(0.038) TCGA-D3-A2J8-06 22 18028054 18028054 C T CECR2 Missense_Mutation p.P1005L 0.14 tolerated_low_confidence(0.11) benign(0.015) TCGA-D3-A2J8-06 22 21096604 21096604 G A PI4KA Missense_Mutation p.P1218L 0.06 deleterious(0.05) probably_damaging(0.949) TCGA-D3-A2J8-06 22 22453345 22453345 G A IGLV8-61 Missense_Mutation p.E31K 0.10 tolerated(0.14) possibly_damaging(0.907) TCGA-D3-A2J8-06 22 22673457 22673457 C T IGLV5-52 Missense_Mutation p.P84S 0.10 deleterious(0.02) possibly_damaging(0.662) TCGA-D3-A2J8-06 22 25120978 25120978 C T PIWIL3 Missense_Mutation p.E712K 0.09 tolerated(0.05) benign(0.362) TCGA-D3-A2J8-06 22 30951492 30951492 C T GAL3ST1 Silent p.L240L 0.09 TCGA-D3-A2J8-06 22 31494784 31494784 G A SMTN Missense_Mutation p.R764H 0.09 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 22 32072956 32072956 G A PRR14L 3'Flank 0.12 TCGA-D3-A2J8-06 22 38494424 38494424 G A BAIAP2L2 Silent p.F114F 0.15 TCGA-D3-A2J8-06 22 44004441 44004441 G A EFCAB6 Nonsense_Mutation p.R868* 0.13 TCGA-D3-A2J8-06 22 50718106 50718106 G A PLXNB2 Missense_Mutation p.L1448F 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 22 51011383 51011383 A C CPT1B Missense_Mutation p.S425A 0.08 tolerated(0.3) benign(0.002) TCGA-D3-A2J8-06 2 103095455 103095455 C T SLC9A4 Silent p.I138I 0.10 TCGA-D3-A2J8-06 2 113783804 113783804 C T IL36B Silent p.Q89Q 0.10 TCGA-D3-A2J8-06 2 11943045 11943047 ATC - LPIN1 In_Frame_Del p.S686del 0.11 TCGA-D3-A2J8-06 2 119726833 119726833 C T MARCO Silent p.V65V 0.17 TCGA-D3-A2J8-06 2 125284880 125284880 C T CNTNAP5 Missense_Mutation p.T498I 0.12 tolerated(0.12) probably_damaging(0.948) TCGA-D3-A2J8-06 2 130831874 130831874 G A POTEF Silent p.I1057I 0.10 TCGA-D3-A2J8-06 2 130877882 130877882 G A POTEF Silent p.F69F 0.10 TCGA-D3-A2J8-06 2 135616903 135616903 C T ACMSD Missense_Mutation p.R59C 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 2 138169256 138169256 G A THSD7B Missense_Mutation p.E925K 0.13 tolerated(1) possibly_damaging(0.486) TCGA-D3-A2J8-06 2 141299440 141299440 T C LRP1B Missense_Mutation p.N2432S 0.07 benign(0.292) TCGA-D3-A2J8-06 2 1440035 1440035 G A TPO Missense_Mutation p.E121K 0.12 tolerated(0.55) benign(0.101) TCGA-D3-A2J8-06 2 1480956 1480956 G A TPO Silent p.G306G 0.14 TCGA-D3-A2J8-06 2 163393492 163393492 C T KCNH7 Missense_Mutation p.E136K 0.14 tolerated(0.86) benign(0.002) TCGA-D3-A2J8-06 2 168726189 168726189 C T B3GALT1 Missense_Mutation p.R214W 0.10 deleterious(0.03) probably_damaging(0.973) TCGA-D3-A2J8-06 2 170097742 170097742 G A LRP2 Silent p.V1267V 0.16 TCGA-D3-A2J8-06 2 170099976 170099976 C T LRP2 Missense_Mutation p.D1163N 0.12 possibly_damaging(0.783) TCGA-D3-A2J8-06 2 179440844 179440844 C T TTN Missense_Mutation p.E23339K 0.12 TCGA-D3-A2J8-06 2 179454489 179454489 C T TTN Missense_Mutation p.E20655K 0.09 TCGA-D3-A2J8-06 2 179568985 179568985 C T TTN Missense_Mutation p.V10038M 0.09 TCGA-D3-A2J8-06 2 179584374 179584374 G A TTN Missense_Mutation p.P7949S 0.11 TCGA-D3-A2J8-06 2 179612743 179612743 G A TTN Intron 0.22 TCGA-D3-A2J8-06 2 179659214 179659214 C T TTN Missense_Mutation p.R437K 0.15 TCGA-D3-A2J8-06 2 190742046 190742046 G A PMS1 Missense_Mutation p.E895K 0.10 deleterious(0) possibly_damaging(0.792) TCGA-D3-A2J8-06 2 1926616 1926616 C T MYT1L Missense_Mutation p.G309R 0.07 tolerated_low_confidence(0.05) benign(0.068) TCGA-D3-A2J8-06 2 196619143 196619143 C T DNAH7 Silent p.R3894R 0.13 TCGA-D3-A2J8-06 2 196651813 196651813 C T DNAH7 Nonsense_Mutation p.W3600* 0.12 TCGA-D3-A2J8-06 2 197298104 197298104 C T HECW2 Missense_Mutation p.R15Q 0.12 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-D3-A2J8-06 2 201485923 201485923 C T AOX1 Missense_Mutation p.S652F 0.11 tolerated(0.19) benign(0.013) TCGA-D3-A2J8-06 2 203748933 203748933 G A WDR12 Missense_Mutation p.P326S 0.11 tolerated(0.09) benign(0.141) TCGA-D3-A2J8-06 2 212251634 212251634 C T ERBB4 Missense_Mutation p.R1142Q 0.11 tolerated(0.19) benign(0.028) TCGA-D3-A2J8-06 2 219510929 219510929 G A ZNF142 Silent p.L472L 0.09 TCGA-D3-A2J8-06 2 219563458 219563458 C T STK36 Missense_Mutation p.S1064L 0.09 deleterious(0.03) benign(0.102) TCGA-D3-A2J8-06 2 219563577 219563577 C T STK36 Silent p.L1104L 0.13 TCGA-D3-A2J8-06 2 220354184 220354184 C T SPEG Missense_Mutation p.P2815L 0.11 benign(0.001) TCGA-D3-A2J8-06 2 226273632 226273632 G A NYAP2 Silent p.E12E 0.08 TCGA-D3-A2J8-06 2 232156154 232156154 C T ARMC9 Missense_Mutation p.S572F 0.12 deleterious(0) probably_damaging(0.973) TCGA-D3-A2J8-06 2 237285798 237285798 C T IQCA1 Silent p.V503V 0.11 TCGA-D3-A2J8-06 2 239165600 239165600 G A PER2 Silent p.I676I 0.12 TCGA-D3-A2J8-06 2 241991542 241991542 C T SNED1 Missense_Mutation p.P646L 0.10 tolerated(0.08) benign(0.168) TCGA-D3-A2J8-06 2 27480115 27480115 C T SLC30A3 Silent p.G228G 0.23 TCGA-D3-A2J8-06 2 31621540 31621540 G A XDH Missense_Mutation p.S111F 0.10 deleterious(0) probably_damaging(0.979) TCGA-D3-A2J8-06 2 36744661 36744661 G A CRIM1 Missense_Mutation p.D728N 0.10 tolerated(0.12) probably_damaging(0.996) TCGA-D3-A2J8-06 2 40391997 40391997 G A SLC8A1 Silent p.F722F 0.13 TCGA-D3-A2J8-06 2 44065103 44065103 G A ABCG5 Intron 0.09 TCGA-D3-A2J8-06 2 44099249 44099249 G A ABCG8 Missense_Mutation p.D367N 0.10 tolerated(0.38) benign(0.003) TCGA-D3-A2J8-06 2 62728490 62728490 G A TMEM17 Missense_Mutation p.L151F 0.10 deleterious(0) probably_damaging(0.991) TCGA-D3-A2J8-06 2 71592753 71592753 C T ZNF638 Missense_Mutation p.R638C 0.11 deleterious(0.01) possibly_damaging(0.855) TCGA-D3-A2J8-06 2 74720143 74720143 C T TTC31 Missense_Mutation p.S453F 0.10 deleterious(0) possibly_damaging(0.641) TCGA-D3-A2J8-06 2 86255069 86255069 G A POLR1A Silent p.S1667S 0.12 TCGA-D3-A2J8-06 2 88427562 88427562 G A FABP1 5'UTR 0.13 TCGA-D3-A2J8-06 2 89161452 89161452 C T IGKC 5'Flank 0.13 TCGA-D3-A2J8-06 2 89986961 89986961 C T IGKV2D-29 Missense_Mutation p.S81F 0.15 deleterious(0) possibly_damaging(0.802) TCGA-D3-A2J8-06 2 90199072 90199072 G A IGKV1D-12 Missense_Mutation p.S78N 0.17 deleterious(0.02) benign(0.058) TCGA-D3-A2J8-06 2 90199073 90199073 T A IGKV1D-12 Missense_Mutation p.S78R 0.17 deleterious(0.02) benign(0.086) TCGA-D3-A2J8-06 2 90259989 90259989 C T IGKV1D-8 Missense_Mutation p.S31F 0.20 deleterious(0.01) benign(0.141) TCGA-D3-A2J8-06 3 108076794 108076794 G A HHLA2 Missense_Mutation p.M263I 0.22 tolerated(0.42) benign(0.001) TCGA-D3-A2J8-06 3 108147413 108147413 C T MYH15 Missense_Mutation p.E1230K 0.09 deleterious(0) possibly_damaging(0.859) TCGA-D3-A2J8-06 3 108778661 108778661 C T MORC1 Silent p.E341E 0.21 TCGA-D3-A2J8-06 3 111632456 111632456 A G PHLDB2 Silent p.E542E 0.20 TCGA-D3-A2J8-06 3 111685508 111685508 G A PHLDB2 Silent p.L1042L 0.15 TCGA-D3-A2J8-06 3 113672623 113672623 C T ZDHHC23 Missense_Mutation p.P80S 0.24 tolerated(0.05) possibly_damaging(0.468) TCGA-D3-A2J8-06 3 120352111 120352111 G A HGD Silent p.F357F 0.06 TCGA-D3-A2J8-06 3 121712078 121712078 C T ILDR1 Silent p.E506E 0.19 TCGA-D3-A2J8-06 3 122354957 122354957 T C PARP15 3'UTR 0.21 TCGA-D3-A2J8-06 3 125690939 125690939 G A ROPN1B Silent p.L14L 0.13 TCGA-D3-A2J8-06 3 127779007 127779007 G T SEC61A1 Missense_Mutation p.D139Y 0.19 deleterious(0.01) possibly_damaging(0.818) TCGA-D3-A2J8-06 3 129207226 129207226 G A IFT122 Missense_Mutation p.E711K 0.22 tolerated(0.18) possibly_damaging(0.713) TCGA-D3-A2J8-06 3 129286547 129286547 G A PLXND1 Missense_Mutation p.R1323C 0.18 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 3 129304873 129304873 G A PLXND1 Silent p.T591T 0.22 TCGA-D3-A2J8-06 3 129304874 129304874 G A PLXND1 Missense_Mutation p.T591I 0.22 tolerated(0.67) benign(0.034) TCGA-D3-A2J8-06 3 133647056 133647056 G A C3orf36 3'UTR 0.10 TCGA-D3-A2J8-06 3 147128382 147128382 G A ZIC1 Silent p.G161G 0.29 TCGA-D3-A2J8-06 3 148459402 148459402 G A AGTR1 Missense_Mutation p.G194R 0.24 deleterious(0) probably_damaging(0.984) TCGA-D3-A2J8-06 3 150264576 150264576 C T EIF2A 5'UTR 0.16 TCGA-D3-A2J8-06 3 160000378 160000378 C T IFT80 Silent p.L468L 0.12 TCGA-D3-A2J8-06 3 167183029 167183029 C T SERPINI2 Silent p.E277E 0.20 TCGA-D3-A2J8-06 3 167183361 167183361 G A SERPINI2 Silent p.F193F 0.14 TCGA-D3-A2J8-06 3 168810803 168810803 C T MECOM Missense_Mutation p.R913Q 0.19 deleterious(0.03) probably_damaging(0.913) TCGA-D3-A2J8-06 3 169642886 169642886 C T SAMD7 Silent p.A84A 0.13 TCGA-D3-A2J8-06 3 169846701 169846701 G A PHC3 Missense_Mutation p.S520F 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J8-06 3 175184861 175184861 C T NAALADL2 Silent p.I474I 0.24 TCGA-D3-A2J8-06 3 179593220 179593220 C T PEX5L Missense_Mutation p.G184E 0.15 deleterious_low_confidence(0.03) benign(0.097) TCGA-D3-A2J8-06 3 180322051 180322051 C T TTC14 Silent p.N175N 0.14 TCGA-D3-A2J8-06 3 181431045 181431045 G A SOX2 Silent p.Q299Q 0.25 TCGA-D3-A2J8-06 3 183521850 183521850 C T YEATS2 Missense_Mutation p.P1220S 0.23 tolerated(0.05) possibly_damaging(0.907) TCGA-D3-A2J8-06 3 183818415 183818415 C T HTR3E Silent p.F85F 0.19 TCGA-D3-A2J8-06 3 186333585 186333585 G A AHSG Splice_Site p.X108_splice 0.13 TCGA-D3-A2J8-06 3 190120204 190120204 G A CLDN16 Missense_Mutation p.D135N 0.15 deleterious(0.04) probably_damaging(0.982) TCGA-D3-A2J8-06 3 191861766 191861766 G A FGF12 3'UTR 0.23 TCGA-D3-A2J8-06 3 194062184 194062184 C T CPN2 Silent p.R416R 0.11 TCGA-D3-A2J8-06 3 194369449 194369449 G A LSG1 Nonsense_Mutation p.R502* 0.25 TCGA-D3-A2J8-06 3 194369450 194369450 G A LSG1 Silent p.H501H 0.25 TCGA-D3-A2J8-06 3 19975233 19975233 C T EFHB Missense_Mutation p.S93N 0.07 tolerated_low_confidence(0.1) benign(0.048) TCGA-D3-A2J8-06 3 21552450 21552450 C T ZNF385D Missense_Mutation p.M114I 0.22 tolerated(0.37) benign(0.004) TCGA-D3-A2J8-06 3 24164263 24164263 C T THRB 3'UTR 0.29 TCGA-D3-A2J8-06 3 25635173 25635173 C G RARB Silent p.L322L 0.23 TCGA-D3-A2J8-06 3 30891538 30891538 C T GADL1 Missense_Mutation p.E201K 0.10 tolerated(0.71) benign(0.043) TCGA-D3-A2J8-06 3 38354523 38354523 G A SLC22A14 Missense_Mutation p.M326I 0.21 tolerated(0.16) benign(0.232) TCGA-D3-A2J8-06 3 38793921 38793921 G A SCN10A Missense_Mutation p.S515L 0.12 deleterious(0.04) benign(0.104) TCGA-D3-A2J8-06 3 3887642 3887642 C T LRRN1 Silent p.I439I 0.11 TCGA-D3-A2J8-06 3 38945362 38945362 C T SCN11A Silent p.G612G 0.16 TCGA-D3-A2J8-06 3 38950508 38950508 G A SCN11A Silent p.L427L 0.07 TCGA-D3-A2J8-06 3 391091 391091 G C CHL1 Missense_Mutation p.G300R 0.18 tolerated(0.28) benign(0.022) TCGA-D3-A2J8-06 3 39226215 39226215 G A XIRP1 Silent p.F1574F 0.10 TCGA-D3-A2J8-06 3 40456291 40456291 G A ENTPD3 Missense_Mutation p.G186E 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 3 45988186 45988186 G A CXCR6 Silent p.V71V 0.19 TCGA-D3-A2J8-06 3 46063436 46063436 C T XCR1 Missense_Mutation p.E2K 0.18 deleterious(0.01) possibly_damaging(0.635) TCGA-D3-A2J8-06 3 46399868 46399868 G A CCR2 Missense_Mutation p.D284N 0.18 deleterious(0.01) possibly_damaging(0.516) TCGA-D3-A2J8-06 3 46414444 46414444 G A CCR5 Silent p.S17S 0.06 TCGA-D3-A2J8-06 3 49694662 49694662 C T BSN Missense_Mutation p.S2558F 0.13 unknown(0) TCGA-D3-A2J8-06 3 52554133 52554133 C T STAB1 Silent p.V1803V 0.11 TCGA-D3-A2J8-06 3 53381598 53381598 G A DCP1A 5'UTR 0.26 TCGA-D3-A2J8-06 3 64589737 64589737 C T ADAMTS9 Missense_Mutation p.R1203Q 0.07 tolerated(0.43) probably_damaging(0.985) TCGA-D3-A2J8-06 3 9068638 9068638 G A SRGAP3 Silent p.I527I 0.21 TCGA-D3-A2J8-06 3 98188932 98188932 C T OR5K1 Missense_Mutation p.S171L 0.25 deleterious(0.01) benign(0.018) TCGA-D3-A2J8-06 4 100460493 100460493 C T C4orf17 Silent p.L268L 0.21 TCGA-D3-A2J8-06 4 110687842 110687842 G A CFI Nonsense_Mutation p.Q66* 0.09 TCGA-D3-A2J8-06 4 111397993 111397993 C T ENPEP Silent p.I141I 0.10 TCGA-D3-A2J8-06 4 113198960 113198960 T C TIFA 3'UTR 0.30 TCGA-D3-A2J8-06 4 11401359 11401359 C T HS3ST1 Missense_Mutation p.D91N 0.10 tolerated(0.15) possibly_damaging(0.765) TCGA-D3-A2J8-06 4 114257035 114257035 G A ANK2 Missense_Mutation p.R1138Q 0.15 probably_damaging(0.998) TCGA-D3-A2J8-06 4 118976018 118976018 G A NDST3 Missense_Mutation p.G318E 0.12 deleterious(0.02) probably_damaging(1) TCGA-D3-A2J8-06 4 15443927 15443927 G A C1QTNF7 Missense_Mutation p.G132E 0.06 deleterious(0) probably_damaging(0.954) TCGA-D3-A2J8-06 4 15444425 15444425 C T C1QTNF7 3'UTR 0.14 TCGA-D3-A2J8-06 4 155219058 155219058 C T DCHS2 Silent p.K1681K 0.10 TCGA-D3-A2J8-06 4 156294382 156294382 G A MAP9 Silent p.F129F 0.08 TCGA-D3-A2J8-06 4 159568246 159568246 A G RXFP1 Missense_Mutation p.K550R 0.13 tolerated(0.08) benign(0.014) TCGA-D3-A2J8-06 4 15987392 15987392 G A PROM1 Silent p.I757I 0.17 TCGA-D3-A2J8-06 4 162376222 162376222 C T FSTL5 Missense_Mutation p.G592E 0.11 tolerated(0.13) probably_damaging(0.997) TCGA-D3-A2J8-06 4 170618716 170618716 C T CLCN3 Missense_Mutation p.P465L 0.12 tolerated(0.6) probably_damaging(0.997) TCGA-D3-A2J8-06 4 183603033 183603033 C T TENM3 Missense_Mutation p.P634L 0.11 tolerated(0.17) probably_damaging(0.981) TCGA-D3-A2J8-06 4 183609456 183609456 G A TENM3 Missense_Mutation p.G725S 0.12 deleterious(0) probably_damaging(0.986) TCGA-D3-A2J8-06 4 23803851 23803851 C T PPARGC1A Missense_Mutation p.D713N 0.07 tolerated(0.49) unknown(0) TCGA-D3-A2J8-06 4 2701860 2701861 CT - FAM193A Frame_Shift_Del p.S1031Ffs*10 0.08 TCGA-D3-A2J8-06 4 40892394 40892394 G A APBB2 Missense_Mutation p.R506C 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 4 42583715 42583715 G A ATP8A1 Nonsense_Mutation p.R253* 0.08 TCGA-D3-A2J8-06 4 54374236 54374236 T G LNX1 Missense_Mutation p.D180A 0.15 tolerated(0.55) benign(0.15) TCGA-D3-A2J8-06 4 55139857 55139857 C T PDGFRA Silent p.L506L 0.10 TCGA-D3-A2J8-06 4 6303256 6303256 C T WFS1 Silent p.A578A 0.11 TCGA-D3-A2J8-06 4 74442374 74442374 G A RASSF6 Missense_Mutation p.R298C 0.10 deleterious(0.01) benign(0.168) TCGA-D3-A2J8-06 4 75938084 75938084 C T PARM1 Missense_Mutation p.P165S 0.07 tolerated(0.18) benign(0.117) TCGA-D3-A2J8-06 4 76489604 76489604 C T C4orf26 Missense_Mutation p.S131F 0.07 tolerated_low_confidence(0.73) possibly_damaging(0.683) TCGA-D3-A2J8-06 4 77317555 77317555 G A CCDC158 Missense_Mutation p.P52L 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A2J8-06 4 8416051 8416051 G A ACOX3 Missense_Mutation p.R171C 0.08 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 4 88731793 88731793 G A IBSP Silent p.S94S 0.14 TCGA-D3-A2J8-06 4 9784955 9784955 C T DRD5 Silent p.F434F 0.11 TCGA-D3-A2J8-06 5 101834424 101834424 G A SLCO6A1 Missense_Mutation p.S42L 0.10 tolerated(0.3) benign(0.045) TCGA-D3-A2J8-06 5 10263303 10263303 C T CCT5 Missense_Mutation p.P459S 0.15 deleterious(0) benign(0.352) TCGA-D3-A2J8-06 5 118582703 118582703 C T DMXL1 Missense_Mutation p.S2958F 0.11 deleterious(0) possibly_damaging(0.474) TCGA-D3-A2J8-06 5 128994424 128994424 G A ADAMTS19 Missense_Mutation p.G801R 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 5 13714630 13714630 G A DNAH5 Silent p.L4337L 0.10 TCGA-D3-A2J8-06 5 138837189 138837189 C T ECSCR Missense_Mutation p.G53E 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A2J8-06 5 140187363 140187363 G A PCDHA4 Silent p.R197R 0.09 TCGA-D3-A2J8-06 5 140236523 140236523 G A PCDHA10 Missense_Mutation p.R297K 0.21 tolerated_low_confidence(0.95) benign(0.004) TCGA-D3-A2J8-06 5 140531337 140531337 C T PCDHB6 Missense_Mutation p.S500F 0.12 deleterious(0) probably_damaging(0.984) TCGA-D3-A2J8-06 5 140573038 140573038 G A PCDHB10 Missense_Mutation p.E305K 0.10 tolerated_low_confidence(1) benign(0) TCGA-D3-A2J8-06 5 140711590 140711590 G A PCDHGA1 Missense_Mutation p.D447N 0.08 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D3-A2J8-06 5 140730519 140730519 A C PCDHGB1 Missense_Mutation p.D231A 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 5 149452977 149452977 G A CSF1R Silent p.V323V 0.09 TCGA-D3-A2J8-06 5 154395849 154395849 G A KIF4B Silent p.L810L 0.18 TCGA-D3-A2J8-06 5 156679629 156679629 C T ITK Missense_Mutation p.R602W 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 5 169702336 169702336 G A LCP2 Missense_Mutation p.P92S 0.09 tolerated(0.06) benign(0.05) TCGA-D3-A2J8-06 5 174868893 174868893 C T DRD1 Missense_Mutation p.E404K 0.09 tolerated(0.21) benign(0.001) TCGA-D3-A2J8-06 5 180475174 180475174 G A BTNL9 Silent p.Q119Q 0.12 TCGA-D3-A2J8-06 5 22078746 22078746 G A CDH12 Silent p.L14L 0.09 TCGA-D3-A2J8-06 5 23523411 23523411 G A PRDM9 Silent p.G298G 0.13 TCGA-D3-A2J8-06 5 24537681 24537681 G A CDH10 Missense_Mutation p.H112Y 0.13 tolerated(0.07) probably_damaging(0.917) TCGA-D3-A2J8-06 5 26988489 26988489 C T CDH9 Intron 0.25 TCGA-D3-A2J8-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.10 tolerated(0.31) possibly_damaging(0.72) TCGA-D3-A2J8-06 5 31317792 31317792 G A CDH6 Missense_Mutation p.G548E 0.09 tolerated(0.31) possibly_damaging(0.602) TCGA-D3-A2J8-06 5 31317869 31317869 G A CDH6 Missense_Mutation p.D574N 0.12 deleterious(0.01) benign(0.276) TCGA-D3-A2J8-06 5 31799732 31799732 A G PDZD2 Missense_Mutation p.K126R 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A2J8-06 5 33614349 33614349 C T ADAMTS12 Missense_Mutation p.G841R 0.13 deleterious(0) probably_damaging(0.993) TCGA-D3-A2J8-06 5 40998125 40998125 G A MROH2B 3'UTR 0.09 TCGA-D3-A2J8-06 5 41000375 41000375 C T MROH2B Missense_Mutation p.D1477N 0.17 tolerated(0.15) benign(0.043) TCGA-D3-A2J8-06 5 41158779 41158779 G A C6 Silent p.I655I 0.14 TCGA-D3-A2J8-06 5 64629877 64629877 C T ADAMTS6 Missense_Mutation p.G370E 0.24 tolerated(0.5) possibly_damaging(0.571) TCGA-D3-A2J8-06 5 68716027 68716027 T C MARVELD2 Missense_Mutation p.V272A 0.15 tolerated(0.07) probably_damaging(0.967) TCGA-D3-A2J8-06 5 75979727 75979727 G A IQGAP2 Missense_Mutation p.R1297Q 0.10 tolerated(0.36) benign(0.001) TCGA-D3-A2J8-06 5 7891493 7891493 C T MTRR Missense_Mutation p.P473S 0.08 deleterious(0.04) probably_damaging(1) TCGA-D3-A2J8-06 5 80631636 80631636 G A ACOT12 Missense_Mutation p.R405C 0.14 tolerated(0.18) benign(0.004) TCGA-D3-A2J8-06 5 89979472 89979472 G A GPR98 Missense_Mutation p.D1912N 0.09 probably_damaging(0.956) TCGA-D3-A2J8-06 6 105405976 105405976 G A LIN28B Missense_Mutation p.G5R 0.10 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2J8-06 6 106969219 106969219 C T AIM1 Missense_Mutation p.S971L 0.11 tolerated(0.38) benign(0.169) TCGA-D3-A2J8-06 6 111995755 111995755 G A FYN Missense_Mutation p.S451F 0.07 deleterious(0) benign(0.185) TCGA-D3-A2J8-06 6 116988271 116988271 T A ZUFSP Missense_Mutation p.I29F 0.16 deleterious(0.03) benign(0.032) TCGA-D3-A2J8-06 6 119525929 119525929 C T MAN1A1 Missense_Mutation p.E371K 0.09 tolerated(0.12) benign(0.017) TCGA-D3-A2J8-06 6 119628140 119628140 C T MAN1A1 Nonsense_Mutation p.W207* 0.10 TCGA-D3-A2J8-06 6 129835527 129835527 C T LAMA2 Missense_Mutation p.H3000Y 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 6 130465700 130465700 C T SAMD3 Missense_Mutation p.E510K 0.10 tolerated_low_confidence(0.22) benign(0.002) TCGA-D3-A2J8-06 6 132031725 132031725 C T CTAGE9 Missense_Mutation p.E145K 0.07 tolerated(0.07) benign(0.329) TCGA-D3-A2J8-06 6 132891983 132891983 G A TAAR6 Missense_Mutation p.D175N 0.06 tolerated(0.3) benign(0.048) TCGA-D3-A2J8-06 6 146625755 146625755 G T GRM1 Missense_Mutation p.W320L 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 6 150164123 150164123 T C LRP11 Silent p.T303T 0.16 TCGA-D3-A2J8-06 6 151865752 151865752 G A CCDC170 Silent p.K163K 0.15 TCGA-D3-A2J8-06 6 161139449 161139449 C T PLG Missense_Mutation p.P304L 0.08 deleterious(0) probably_damaging(0.976) TCGA-D3-A2J8-06 6 17675216 17675216 G A NUP153 Missense_Mutation p.P258S 0.15 tolerated(0.08) probably_damaging(0.994) TCGA-D3-A2J8-06 6 28227578 28227578 C T NKAPL Silent p.F143F 0.09 TCGA-D3-A2J8-06 6 29054621 29054621 G A OR2B3 Silent p.I135I 0.09 TCGA-D3-A2J8-06 6 30670353 30670353 G A MDC1 Missense_Mutation p.P2027S 0.12 tolerated(0.13) probably_damaging(0.993) TCGA-D3-A2J8-06 6 30955398 30955398 C T MUC21 Silent p.L482L 0.16 TCGA-D3-A2J8-06 6 31807420 31807420 G T C6orf48 Nonsense_Mutation p.G70* 0.12 TCGA-D3-A2J8-06 6 31905185 31905185 G A CFB Missense_Mutation p.E207K 0.10 tolerated(0.78) benign(0) TCGA-D3-A2J8-06 6 32714163 32714163 C T HLA-DQA2 Missense_Mutation p.L254F 0.07 deleterious(0.01) benign(0.093) TCGA-D3-A2J8-06 6 35392547 35392547 C T PPARD Silent p.L357L 0.09 TCGA-D3-A2J8-06 6 36887380 36887380 C T C6orf89 Silent p.I291I 0.08 TCGA-D3-A2J8-06 6 36995249 36995249 C T FGD2 Silent p.F550F 0.11 TCGA-D3-A2J8-06 6 38738242 38738242 A T DNAH8 Missense_Mutation p.K340N 0.16 benign(0.158) TCGA-D3-A2J8-06 6 38950197 38950197 C T DNAH8 Nonsense_Mutation p.Q4087* 0.10 TCGA-D3-A2J8-06 6 4069899 4069899 C T FAM217A Nonsense_Mutation p.W186* 0.08 TCGA-D3-A2J8-06 6 41738529 41738529 G A FRS3 Missense_Mutation p.P436L 0.13 tolerated(0.2) benign(0.01) TCGA-D3-A2J8-06 6 43109528 43109528 C T PTK7 Missense_Mutation p.R589C 0.08 deleterious(0) probably_damaging(0.946) TCGA-D3-A2J8-06 6 43523660 43523660 G A XPO5 Missense_Mutation p.R452C 0.11 deleterious(0) probably_damaging(0.964) TCGA-D3-A2J8-06 6 50803973 50803973 C T TFAP2B Silent p.L267L 0.15 TCGA-D3-A2J8-06 6 52617667 52617667 G A GSTA2 Silent p.F133F 0.12 TCGA-D3-A2J8-06 6 53787706 53787706 C T LRRC1 3'UTR 0.24 TCGA-D3-A2J8-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.12 tolerated(0.45) benign(0.018) TCGA-D3-A2J8-06 6 7583007 7583007 C T DSP Missense_Mutation p.R1838C 0.09 possibly_damaging(0.77) TCGA-D3-A2J8-06 6 76660470 76660470 G A IMPG1 Missense_Mutation p.H545Y 0.16 tolerated(0.69) benign(0.014) TCGA-D3-A2J8-06 6 85466495 85466495 G A TBX18 Missense_Mutation p.S231L 0.10 deleterious(0.04) benign(0.15) TCGA-D3-A2J8-06 6 88321922 88321922 C T ORC3 Nonsense_Mutation p.Q277* 0.13 TCGA-D3-A2J8-06 7 100685859 100685859 C T MUC17 Missense_Mutation p.T3721I 0.16 possibly_damaging(0.507) TCGA-D3-A2J8-06 7 105732265 105732265 G A SYPL1 Missense_Mutation p.P256S 0.08 deleterious(0.05) possibly_damaging(0.728) TCGA-D3-A2J8-06 7 117175355 117175355 C T CFTR Silent p.L211L 0.08 TCGA-D3-A2J8-06 7 119915622 119915622 C T KCND2 Silent p.I312I 0.13 TCGA-D3-A2J8-06 7 120385937 120385937 G A KCND2 Missense_Mutation p.G524E 0.10 tolerated_low_confidence(0.11) benign(0.084) TCGA-D3-A2J8-06 7 127970892 127970892 G A RBM28 Missense_Mutation p.P370L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2J8-06 7 130002292 130002292 G A CPA5 Missense_Mutation p.G183D 0.10 deleterious(0.03) possibly_damaging(0.754) TCGA-D3-A2J8-06 7 131815219 131815219 G A PLXNA4 3'UTR 0.10 TCGA-D3-A2J8-06 7 135261109 135261109 C T NUP205 Silent p.S145S 0.07 TCGA-D3-A2J8-06 7 140110840 140110840 C T RAB19 Intron 0.10 TCGA-D3-A2J8-06 7 141618810 141618810 C T OR9A4 Silent p.I45I 0.14 TCGA-D3-A2J8-06 7 141673169 141673169 G A TAS2R38 Silent p.L107L 0.10 TCGA-D3-A2J8-06 7 141732659 141732659 C T MGAM Missense_Mutation p.S540L 0.13 deleterious(0.02) possibly_damaging(0.899) TCGA-D3-A2J8-06 7 142231754 142231754 G A TRBV10-1 Nonsense_Mutation p.R55* 0.10 TCGA-D3-A2J8-06 7 143029525 143029525 C T CLCN1 Missense_Mutation p.P394S 0.12 deleterious(0.04) probably_damaging(0.946) TCGA-D3-A2J8-06 7 143048844 143048844 G A CLCN1 Missense_Mutation p.G918E 0.12 tolerated_low_confidence(0.4) benign(0.004) TCGA-D3-A2J8-06 7 143771361 143771361 C T OR2A25 Missense_Mutation p.P17S 0.10 tolerated(1) benign(0.064) TCGA-D3-A2J8-06 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.10 tolerated(0.68) benign(0.058) TCGA-D3-A2J8-06 7 150269298 150269298 G A GIMAP4 Missense_Mutation p.G47E 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 7 150439761 150439761 G A GIMAP5 Silent p.R178R 0.08 TCGA-D3-A2J8-06 7 154561201 154561201 G A DPP6 Missense_Mutation p.D320N 0.16 tolerated(0.19) possibly_damaging(0.838) TCGA-D3-A2J8-06 7 21805064 21805064 C T DNAH11 Missense_Mutation p.P2994S 0.08 probably_damaging(0.99) TCGA-D3-A2J8-06 7 31692414 31692414 G A CCDC129 Intron 0.13 TCGA-D3-A2J8-06 7 34091556 34091556 G A BMPER Missense_Mutation p.D254N 0.09 deleterious(0.04) possibly_damaging(0.478) TCGA-D3-A2J8-06 7 37780794 37780794 G A GPR141 Missense_Mutation p.E267K 0.12 deleterious(0) probably_damaging(0.994) TCGA-D3-A2J8-06 7 38812206 38812206 G A VPS41 Silent p.I348I 0.23 TCGA-D3-A2J8-06 7 47925346 47925346 G A PKD1L1 Missense_Mutation p.S1048F 0.08 tolerated(0.55) benign(0.166) TCGA-D3-A2J8-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.16 TCGA-D3-A2J8-06 7 6196551 6196551 T C USP42 Missense_Mutation p.F1270L 0.16 deleterious(0.05) benign(0.146) TCGA-D3-A2J8-06 7 72683241 72683241 C T GTF2IRD2P1 RNA 0.06 TCGA-D3-A2J8-06 7 73010765 73010765 G A MLXIPL Missense_Mutation p.P623S 0.13 tolerated(0.08) benign(0.011) TCGA-D3-A2J8-06 7 81372765 81372765 C T HGF Missense_Mutation p.D257N 0.18 deleterious(0) possibly_damaging(0.697) TCGA-D3-A2J8-06 7 82474693 82474693 C T PCLO Missense_Mutation p.G4647E 0.21 unknown(0) TCGA-D3-A2J8-06 7 82582185 82582185 G A PCLO Missense_Mutation p.S2695F 0.17 unknown(0) TCGA-D3-A2J8-06 7 82764435 82764435 C T PCLO Missense_Mutation p.E811K 0.10 unknown(0) TCGA-D3-A2J8-06 7 87537097 87537097 G T DBF4 Missense_Mutation p.K548N 0.09 tolerated(0.24) benign(0.003) TCGA-D3-A2J8-06 7 91715708 91715708 T A AKAP9 Nonsense_Mutation p.L3064* 0.08 TCGA-D3-A2J8-06 7 95222230 95222230 C T PDK4 Missense_Mutation p.R124Q 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A2J8-06 8 100883688 100883688 G C VPS13B Missense_Mutation p.Q3861H 0.13 deleterious(0) benign(0.216) TCGA-D3-A2J8-06 8 102570758 102570758 G A GRHL2 Silent p.E132E 0.08 TCGA-D3-A2J8-06 8 110476955 110476955 C T PKHD1L1 Missense_Mutation p.P2632S 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 8 110984919 110984919 C T KCNV1 Missense_Mutation p.G187R 0.15 tolerated(0.3) benign(0.073) TCGA-D3-A2J8-06 8 121381578 121381578 G A COL14A1 Missense_Mutation p.G1722E 0.11 deleterious(0) probably_damaging(0.941) TCGA-D3-A2J8-06 8 132052058 132052058 G A ADCY8 Silent p.F174F 0.09 TCGA-D3-A2J8-06 8 134031930 134031930 C T TG Missense_Mutation p.P2289L 0.08 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 8 140630697 140630697 C T KCNK9 Missense_Mutation p.R310H 0.10 tolerated(0.08) benign(0.35) TCGA-D3-A2J8-06 8 141445257 141445257 G A TRAPPC9 Silent p.F369F 0.14 TCGA-D3-A2J8-06 8 144103268 144103268 C T LY6E 3'UTR 0.27 TCGA-D3-A2J8-06 8 144511677 144511677 C T MAFA Silent p.V300V 0.12 TCGA-D3-A2J8-06 8 144732969 144732969 C T ZNF623 Silent p.H309H 0.12 TCGA-D3-A2J8-06 8 145780997 145780997 C T ARHGAP39 Silent p.K181K 0.08 TCGA-D3-A2J8-06 8 17163275 17163275 C T MTMR7 Missense_Mutation p.R448Q 0.16 tolerated(0.51) benign(0.001) TCGA-D3-A2J8-06 8 17401052 17401052 C T SLC7A2 Silent p.I108I 0.14 TCGA-D3-A2J8-06 8 24187570 24187570 C T ADAM28 Missense_Mutation p.H349Y 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 8 24298565 24298565 G A ADAM7 5'UTR 0.13 TCGA-D3-A2J8-06 8 24349489 24349489 C T ADAM7 Missense_Mutation p.S477L 0.12 deleterious(0) probably_damaging(0.967) TCGA-D3-A2J8-06 8 30702531 30702531 G A TEX15 Missense_Mutation p.P1335S 0.13 tolerated(0.16) benign(0.164) TCGA-D3-A2J8-06 8 32621406 32621406 C T NRG1 Missense_Mutation p.P475L 0.13 tolerated(0.48) probably_damaging(1) TCGA-D3-A2J8-06 8 35542215 35542215 C T UNC5D Silent p.A289A 0.08 TCGA-D3-A2J8-06 8 39506007 39506007 T C ADAM18 Silent p.I397I 0.13 TCGA-D3-A2J8-06 8 51705281 51705281 C T SNTG1 Silent p.F482F 0.10 TCGA-D3-A2J8-06 8 53085075 53085075 C T ST18 Missense_Mutation p.E116K 0.12 tolerated(0.52) benign(0.003) TCGA-D3-A2J8-06 8 55539221 55539221 C T RP1 Missense_Mutation p.P927S 0.13 tolerated(0.9) benign(0.015) TCGA-D3-A2J8-06 8 55539962 55539962 G A RP1 Missense_Mutation p.E1174K 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J8-06 8 55540068 55540068 C T RP1 Missense_Mutation p.S1209F 0.15 deleterious(0) probably_damaging(0.971) TCGA-D3-A2J8-06 8 55540361 55540361 G A RP1 Missense_Mutation p.D1307N 0.15 deleterious(0.02) benign(0.139) TCGA-D3-A2J8-06 8 55540803 55540803 G A RP1 Missense_Mutation p.S1454N 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2J8-06 8 67047249 67047249 C T TRIM55 Silent p.P122P 0.15 TCGA-D3-A2J8-06 8 68999972 68999972 C T PREX2 Missense_Mutation p.P681S 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A2J8-06 8 87738790 87738790 C T CNGB3 Missense_Mutation p.E103K 0.13 tolerated(0.29) benign(0.007) TCGA-D3-A2J8-06 8 92032399 92032399 G A TMEM55A Silent p.C116C 0.23 TCGA-D3-A2J8-06 9 101597623 101597623 G A GALNT12 Missense_Mutation p.G337E 0.10 deleterious(0) probably_damaging(0.979) TCGA-D3-A2J8-06 9 104048436 104048436 C A LPPR1 Silent p.S101S 0.11 TCGA-D3-A2J8-06 9 104499593 104499593 G A GRIN3A Silent p.I223I 0.10 TCGA-D3-A2J8-06 9 112018069 112018069 G A EPB41L4B Silent p.V328V 0.08 TCGA-D3-A2J8-06 9 113170069 113170069 G A SVEP1 Missense_Mutation p.S2604F 0.13 benign(0.012) TCGA-D3-A2J8-06 9 114462328 114462328 C A C9orf84 Splice_Site p.X966_splice 0.09 TCGA-D3-A2J8-06 9 115337320 115337320 G A KIAA1958 Silent p.Q320Q 0.08 TCGA-D3-A2J8-06 9 116356350 116356350 C T RGS3 Intron 0.09 TCGA-D3-A2J8-06 9 117553074 117553074 G A TNFSF15 Silent p.F138F 0.15 TCGA-D3-A2J8-06 9 122011315 122011315 C T BRINP1 Missense_Mutation p.R111K 0.10 deleterious(0.01) benign(0.162) TCGA-D3-A2J8-06 9 125315671 125315671 C T OR1N2 Missense_Mutation p.P75S 0.10 deleterious(0) probably_damaging(0.996) TCGA-D3-A2J8-06 9 130167832 130167832 C T SLC2A8 Silent p.F428F 0.11 TCGA-D3-A2J8-06 9 138714531 138714531 G A CAMSAP1 Missense_Mutation p.P659L 0.10 tolerated(0.23) benign(0.001) TCGA-D3-A2J8-06 9 138714532 138714532 G A CAMSAP1 Missense_Mutation p.P659S 0.10 tolerated(0.26) benign(0.002) TCGA-D3-A2J8-06 9 14824883 14824883 C T FREM1 Silent p.K663K 0.21 TCGA-D3-A2J8-06 9 19070246 19070246 G A HAUS6 Silent p.T449T 0.13 TCGA-D3-A2J8-06 9 23762043 23762043 C T ELAVL2 Missense_Mutation p.E64K 0.17 tolerated(0.07) benign(0.027) TCGA-D3-A2J8-06 9 27948802 27948802 C T LINGO2 3'UTR 0.15 TCGA-D3-A2J8-06 9 35957487 35957487 C T OR2S2 Silent p.T203T 0.13 TCGA-D3-A2J8-06 9 37440577 37440577 T A ZBTB5 Nonsense_Mutation p.K658* 0.11 TCGA-D3-A2J8-06 9 71491667 71491667 G A PIP5K1B Missense_Mutation p.R92Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A2J8-06 9 73477836 73477836 G A TRPM3 Silent p.S150S 0.19 TCGA-D3-A2J8-06 9 82267551 82267551 C T TLE4 Missense_Mutation p.P145L 0.11 deleterious(0.02) possibly_damaging(0.484) TCGA-D3-A2J8-06 9 8484228 8484228 T G PTPRD Missense_Mutation p.K1102Q 0.10 tolerated(0.33) possibly_damaging(0.71) TCGA-D3-A2J8-06 9 95272208 95272208 G A ECM2 Nonsense_Mutation p.Q427* 0.12 TCGA-D3-A2J8-06 9 95285090 95285090 C T ECM2 Missense_Mutation p.G20E 0.22 deleterious_low_confidence(0.05) benign(0.015) TCGA-D3-A2J8-06 X 100077326 100077326 G A CSTF2 Missense_Mutation p.R75Q 0.30 deleterious(0.05) probably_damaging(0.982) TCGA-D3-A2J8-06 X 100077327 100077327 G A CSTF2 Silent p.R75R 0.30 TCGA-D3-A2J8-06 X 105178361 105178361 G A NRK Missense_Mutation p.D1143N 0.24 tolerated(0.08) benign(0.003) TCGA-D3-A2J8-06 X 105280695 105280695 G A SERPINA7 Silent p.L119L 0.27 TCGA-D3-A2J8-06 X 105280882 105280882 C T SERPINA7 Silent p.R56R 0.23 TCGA-D3-A2J8-06 X 107924160 107924160 G A COL4A5 Missense_Mutation p.G1354E 0.23 probably_damaging(0.999) TCGA-D3-A2J8-06 X 112048229 112048229 G A AMOT Silent p.I574I 0.27 TCGA-D3-A2J8-06 X 115304508 115304508 C T AGTR2 Silent p.F325F 0.24 TCGA-D3-A2J8-06 X 123805605 123805605 T G TENM1 Silent p.R366R 0.12 TCGA-D3-A2J8-06 X 130413158 130413158 G A IGSF1 Missense_Mutation p.S575F 0.35 deleterious(0) probably_damaging(0.922) TCGA-D3-A2J8-06 X 150349133 150349133 G A GPR50 Missense_Mutation p.E360K 0.29 tolerated(0.12) benign(0.305) TCGA-D3-A2J8-06 X 151376473 151376473 C T GABRA3 Missense_Mutation p.G260R 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2J8-06 X 151935354 151935354 G A MAGEA3 Silent p.F271F 0.28 TCGA-D3-A2J8-06 X 3240713 3240713 G A MXRA5 Missense_Mutation p.P1005S 0.32 tolerated(0.1) benign(0.003) TCGA-D3-A2J8-06 X 3242165 3242165 G A MXRA5 Silent p.L521L 0.38 TCGA-D3-A2J8-06 X 41203517 41203523 CTTGCGT - DDX3X Frame_Shift_Del p.P297Rfs*22 0.17 TCGA-D3-A2J8-06 X 48214653 48214653 G A SSX3 Missense_Mutation p.P11L 0.27 tolerated(0.19) benign(0.033) TCGA-D3-A2J8-06 X 49062997 49062997 C T CACNA1F Missense_Mutation p.R1827Q 0.38 tolerated(0.28) benign(0) TCGA-D3-A2J8-06 X 53674318 53674318 G A HUWE1 Missense_Mutation p.S115F 0.57 probably_damaging(0.998) TCGA-D3-A2J8-06 X 73067708 73067708 G A XIST RNA 0.28 TCGA-D3-A2J8-06 X 74296471 74296471 G A ABCB7 Missense_Mutation p.P159S 0.30 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A2J8-06 X 74651289 74651289 G T ZDHHC15 Missense_Mutation p.A149D 0.24 tolerated(1) benign(0.004) TCGA-D3-A2J8-06 X 78011429 78011429 G A LPAR4 Missense_Mutation p.D355N 0.30 tolerated_low_confidence(0.28) benign(0.012) TCGA-D3-A2J8-06 X 84614582 84614582 C T POF1B Silent p.R137R 0.26 TCGA-D3-A2J8-06 Y 21878556 21878556 G A KDM5D Missense_Mutation p.P588S 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2J8-06 Y 4925489 4925489 G A PCDH11Y Missense_Mutation p.E209K 0.19 deleterious(0.05) benign(0.013) TCGA-D3-A2J9-06 10 129347758 129347758 T C NPS Missense_Mutation p.V5A 0.15 tolerated(0.26) benign(0) TCGA-D3-A2J9-06 10 13228249 13228249 A T MCM10 Missense_Mutation p.N396I 0.11 deleterious(0) probably_damaging(0.989) TCGA-D3-A2J9-06 10 73057761 73057761 C T UNC5B Silent p.I862I 0.09 TCGA-D3-A2J9-06 10 7763636 7763636 G A ITIH2 Missense_Mutation p.V255I 0.11 tolerated(0.28) benign(0.026) TCGA-D3-A2J9-06 10 85981770 85981770 G A LRIT2 Missense_Mutation p.S520F 0.09 tolerated(0.06) possibly_damaging(0.472) TCGA-D3-A2J9-06 10 92503376 92503376 G A HTR7 Missense_Mutation p.S456F 0.14 tolerated_low_confidence(0.06) benign(0) TCGA-D3-A2J9-06 11 57958249 57958249 G A OR9Q2 Missense_Mutation p.R96H 0.14 tolerated(0.11) possibly_damaging(0.861) TCGA-D3-A2J9-06 11 6292680 6292680 C T CCKBR Silent p.P417P 0.13 TCGA-D3-A2J9-06 11 75115750 75115750 C T RPS3 Silent p.P207P 0.10 TCGA-D3-A2J9-06 11 93822052 93822052 G A HEPHL1 Missense_Mutation p.A738T 0.14 deleterious(0.03) probably_damaging(0.948) TCGA-D3-A2J9-06 12 120241141 120241141 A G CIT Silent p.F388F 0.09 TCGA-D3-A2J9-06 12 120903445 120903445 G A SRSF9 Nonsense_Mutation p.R112* 0.11 TCGA-D3-A2J9-06 12 121970717 121970717 G A KDM2B Missense_Mutation p.P309S 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J9-06 12 53621300 53621300 C T RARG Silent p.A10A 0.17 TCGA-D3-A2J9-06 12 70760843 70760843 A G KCNMB4 Missense_Mutation p.N110S 0.13 deleterious(0.03) benign(0.219) TCGA-D3-A2J9-06 13 20567307 20567307 G A ZMYM2 Missense_Mutation p.G32E 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D3-A2J9-06 13 53420310 53420310 G A PCDH8 Silent p.I754I 0.08 TCGA-D3-A2J9-06 14 22363023 22363023 C A TRAV8-4 Missense_Mutation p.L52I 0.20 deleterious(0) probably_damaging(0.944) TCGA-D3-A2J9-06 15 45965882 45965882 G A SQRDL Nonsense_Mutation p.W179* 0.10 TCGA-D3-A2J9-06 15 53998206 53998206 A T WDR72 Silent p.L340L 0.21 TCGA-D3-A2J9-06 15 75012958 75012958 G A CYP1A1 Silent p.L471L 0.10 TCGA-D3-A2J9-06 15 81173339 81173339 C T KIAA1199 Missense_Mutation p.S160F 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-D3-A2J9-06 16 3304362 3304362 C T MEFV Missense_Mutation p.G236R 0.08 tolerated(0.09) benign(0.08) TCGA-D3-A2J9-06 16 57787354 57787354 G A KATNB1 Missense_Mutation p.R367Q 0.15 tolerated(0.5) benign(0.12) TCGA-D3-A2J9-06 16 84456296 84456296 C T ATP2C2 Missense_Mutation p.A279V 0.10 tolerated(0.11) probably_damaging(1) TCGA-D3-A2J9-06 17 3101267 3101267 G A OR1A2 Missense_Mutation p.G152E 0.12 deleterious(0) probably_damaging(0.981) TCGA-D3-A2J9-06 17 38233777 38233777 C T THRA Silent p.Y46Y 0.09 TCGA-D3-A2J9-06 17 42330593 42330593 G A SLC4A1 Missense_Mutation p.A735V 0.12 tolerated(0.88) benign(0.168) TCGA-D3-A2J9-06 17 7535032 7535032 C T SHBG Silent p.L227L 0.07 TCGA-D3-A2J9-06 17 7646342 7646342 C T DNAH2 Nonsense_Mutation p.R596* 0.08 TCGA-D3-A2J9-06 19 15198338 15198338 C T OR1I1 Silent p.L154L 0.13 TCGA-D3-A2J9-06 19 34891000 34891000 C A GPI 3'UTR 0.08 TCGA-D3-A2J9-06 19 39396105 39396105 C T NFKBIB Silent p.S183S 0.10 TCGA-D3-A2J9-06 19 42861644 42861644 C T MEGF8 Missense_Mutation p.S1573F 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A2J9-06 19 50251672 50251672 C T TSKS Missense_Mutation p.E152K 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2J9-06 1 152287815 152287815 C T FLG Missense_Mutation p.E40K 0.09 possibly_damaging(0.575) TCGA-D3-A2J9-06 1 175332878 175332878 G A TNR Silent p.F891F 0.15 TCGA-D3-A2J9-06 1 176668453 176668453 G A PAPPA2 Silent p.L988L 0.15 TCGA-D3-A2J9-06 1 22157780 22157780 G A HSPG2 Silent p.I3830I 0.11 TCGA-D3-A2J9-06 1 27942078 27942078 C T FGR Silent p.P295P 0.15 TCGA-D3-A2J9-06 1 32096294 32096294 C A PEF1 Nonsense_Mutation p.E259* 0.08 TCGA-D3-A2J9-06 1 32192984 32192984 T C BAI2 3'UTR 0.19 TCGA-D3-A2J9-06 1 32280764 32280764 C T SPOCD1 Silent p.R57R 0.11 TCGA-D3-A2J9-06 1 75198982 75198982 G A TYW3 Silent p.A18A 0.13 TCGA-D3-A2J9-06 20 34832830 34832830 C T AAR2 Silent p.F323F 0.25 TCGA-D3-A2J9-06 20 44521070 44521070 G A CTSA Missense_Mutation p.G149R 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J9-06 20 47706113 47706113 C T CSE1L Silent p.L671L 0.12 TCGA-D3-A2J9-06 20 52198559 52198559 G A ZNF217 Silent p.F269F 0.13 TCGA-D3-A2J9-06 22 22712439 22712439 G A IGLV1-47 Missense_Mutation p.G61E 0.13 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-D3-A2J9-06 22 27024386 27024386 C T CRYBA4 Silent p.H145H 0.13 TCGA-D3-A2J9-06 22 37211241 37211241 C T PVALB Missense_Mutation p.V34I 0.14 tolerated(0.13) benign(0.02) TCGA-D3-A2J9-06 2 105954059 105954059 G T C2orf49 Silent p.V5V 0.12 TCGA-D3-A2J9-06 2 203622021 203622021 C T FAM117B Missense_Mutation p.P397L 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2J9-06 2 239184504 239184504 C T PER2 Missense_Mutation p.E110K 0.08 deleterious(0) probably_damaging(0.939) TCGA-D3-A2J9-06 2 241533417 241533417 C T CAPN10 Silent p.I261I 0.11 TCGA-D3-A2J9-06 2 84811252 84811252 C T DNAH6 Missense_Mutation p.R787W 0.09 deleterious(0) possibly_damaging(0.843) TCGA-D3-A2J9-06 3 12224831 12224831 C T SYN2 RNA 0.08 TCGA-D3-A2J9-06 3 13522850 13522850 C T HDAC11 Missense_Mutation p.P36L 0.09 deleterious(0) probably_damaging(0.994) TCGA-D3-A2J9-06 3 39228016 39228016 G A XIRP1 Missense_Mutation p.P974L 0.14 tolerated_low_confidence(0.1) benign(0.013) TCGA-D3-A2J9-06 3 47144868 47144868 G A SETD2 Missense_Mutation p.H1629Y 0.14 deleterious(0) possibly_damaging(0.885) TCGA-D3-A2J9-06 4 103806372 103806372 G C CISD2 Splice_Site p.X35_splice 0.09 TCGA-D3-A2J9-06 4 152679989 152679989 G A PET112 Missense_Mutation p.R88C 0.07 tolerated(0.15) benign(0.005) TCGA-D3-A2J9-06 4 17528679 17528679 G A CLRN2 Missense_Mutation p.V225I 0.08 tolerated(0.11) probably_damaging(0.978) TCGA-D3-A2J9-06 4 25005685 25005685 G A LGI2 Silent p.I342I 0.21 TCGA-D3-A2J9-06 4 71467326 71467326 G A AMBN Silent p.L162L 0.11 TCGA-D3-A2J9-06 5 134785454 134785454 G A TIFAB Missense_Mutation p.S59F 0.09 deleterious(0.01) possibly_damaging(0.726) TCGA-D3-A2J9-06 5 140308742 140308742 C T PCDHAC1 Silent p.L755L 0.10 TCGA-D3-A2J9-06 5 1477559 1477559 G A LPCAT1 Missense_Mutation p.P287S 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2J9-06 5 159776698 159776698 C T C1QTNF2 Missense_Mutation p.G157E 0.13 deleterious(0) unknown(0) TCGA-D3-A2J9-06 5 55110772 55110772 C T DDX4 Missense_Mutation p.R587C 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2J9-06 5 75866474 75866474 C T IQGAP2 Silent p.L125L 0.10 TCGA-D3-A2J9-06 6 12294286 12294286 G A EDN1 Missense_Mutation p.D116N 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2J9-06 6 134349981 134349981 C T SLC2A12 Missense_Mutation p.V328I 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2J9-06 6 170599294 170599294 C T DLL1 5'UTR 0.11 TCGA-D3-A2J9-06 6 170871246 170871246 C T TBP Missense_Mutation p.S141F 0.15 tolerated(0.5) possibly_damaging(0.485) TCGA-D3-A2J9-06 6 28543374 28543374 C T SCAND3 Missense_Mutation p.E370K 0.09 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-D3-A2J9-06 6 30309586 30309586 C T TRIM39 Silent p.L369L 0.26 TCGA-D3-A2J9-06 6 49802994 49802994 C T CRISP1 3'UTR 0.19 TCGA-D3-A2J9-06 6 52268563 52268563 C T PAQR8 Silent p.A184A 0.29 TCGA-D3-A2J9-06 6 90365646 90365646 G A MDN1 Silent p.S5109S 0.17 TCGA-D3-A2J9-06 7 121960249 121960249 C T CADPS2 Missense_Mutation p.M1287I 0.09 deleterious_low_confidence(0) benign(0.269) TCGA-D3-A2J9-06 7 127223349 127223349 C T GCC1 Silent p.E349E 0.24 TCGA-D3-A2J9-06 7 1474304 1474304 G A MICALL2 Silent p.L881L 0.14 TCGA-D3-A2J9-06 7 156979615 156979615 C T UBE3C Silent p.L411L 0.17 TCGA-D3-A2J9-06 7 2959008 2959008 G A CARD11 Silent p.S836S 0.11 TCGA-D3-A2J9-06 7 44146195 44146195 G A AEBP1 Missense_Mutation p.G102S 0.25 tolerated_low_confidence(0.16) unknown(0) TCGA-D3-A2J9-06 7 70885994 70885994 G A WBSCR17 Missense_Mutation p.E289K 0.17 tolerated(0.4) probably_damaging(0.993) TCGA-D3-A2J9-06 8 142178404 142178404 C T DENND3 Silent p.A605A 0.09 TCGA-D3-A2J9-06 8 145024808 145024808 C T PLEC Missense_Mutation p.G23S 0.13 unknown(0) TCGA-D3-A2J9-06 8 57228829 57228829 C T SDR16C5 Missense_Mutation p.M26I 0.10 tolerated(0.26) benign(0.001) TCGA-D3-A2J9-06 9 21166363 21166363 C T IFNA21 Missense_Mutation p.M83I 0.11 tolerated(0.06) benign(0.04) TCGA-D3-A2J9-06 9 97382612 97382612 C T FBP1 Missense_Mutation p.R111K 0.16 tolerated(0.18) benign(0.01) TCGA-D3-A2J9-06 X 122801095 122801095 G A THOC2 Missense_Mutation p.A351V 0.40 deleterious(0) possibly_damaging(0.521) TCGA-D3-A2J9-06 X 47436013 47436013 G T SYN1 Missense_Mutation p.F288L 0.20 deleterious(0.01) benign(0.296) TCGA-D3-A2J9-06 X 65409641 65409641 C T HEPH Silent p.F362F 0.25 TCGA-D3-A2JA-06 10 1038588 1038588 C T GTPBP4 Missense_Mutation p.P70S 0.18 deleterious(0) possibly_damaging(0.742) TCGA-D3-A2JA-06 10 119042949 119042949 C T PDZD8 Missense_Mutation p.E1099K 0.29 deleterious(0) benign(0.242) TCGA-D3-A2JA-06 10 134218848 134218848 C T PWWP2B Missense_Mutation p.P282S 0.37 tolerated(0.16) benign(0.245) TCGA-D3-A2JA-06 10 21414812 21414812 G A C10orf113 Silent p.F136F 0.23 TCGA-D3-A2JA-06 10 26377306 26377306 G A MYO3A Missense_Mutation p.E512K 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 10 45473421 45473421 C T C10orf10 Missense_Mutation p.E20K 0.21 deleterious(0) possibly_damaging(0.801) TCGA-D3-A2JA-06 10 48389645 48389645 C T RBP3 Silent p.V411V 0.13 TCGA-D3-A2JA-06 10 49393605 49393605 G A FRMPD2 Missense_Mutation p.R784C 0.14 deleterious(0.03) probably_damaging(0.958) TCGA-D3-A2JA-06 10 64949134 64949134 G A JMJD1C Missense_Mutation p.P2122S 0.15 deleterious(0.04) probably_damaging(0.975) TCGA-D3-A2JA-06 10 70446317 70446317 C T TET1 Missense_Mutation p.R1753C 0.27 deleterious(0) probably_damaging(0.944) TCGA-D3-A2JA-06 10 72468534 72468534 C T ADAMTS14 Silent p.I290I 0.21 TCGA-D3-A2JA-06 10 94653221 94653221 T A EXOC6 Missense_Mutation p.F73I 0.22 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JA-06 10 95791914 95791914 C T PLCE1 Missense_Mutation p.P371S 0.24 tolerated_low_confidence(0.57) benign(0.001) TCGA-D3-A2JA-06 10 95931163 95931163 C T PLCE1 Silent p.P573P 0.26 TCGA-D3-A2JA-06 11 102826002 102826002 G T MMP13 Missense_Mutation p.S114Y 0.27 deleterious(0) possibly_damaging(0.715) TCGA-D3-A2JA-06 11 104971360 104971360 C T CARD17 Missense_Mutation p.D52N 0.48 deleterious(0.03) possibly_damaging(0.6) TCGA-D3-A2JA-06 11 113078638 113078638 T G NCAM1 Missense_Mutation p.V336G 0.70 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JA-06 11 14529245 14529245 G A PSMA1 Missense_Mutation p.P237L 0.52 deleterious(0.04) benign(0.024) TCGA-D3-A2JA-06 11 17496474 17496474 G A ABCC8 Silent p.F83F 0.48 TCGA-D3-A2JA-06 11 31086035 31086035 G A DCDC1 Missense_Mutation p.P858S 0.44 tolerated(0.13) probably_damaging(0.986) TCGA-D3-A2JA-06 11 32635935 32635935 C T CCDC73 Silent p.Q643Q 0.42 TCGA-D3-A2JA-06 11 34502418 34502418 C T ELF5 Missense_Mutation p.G201E 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 11 46797807 46797807 C T CKAP5 Missense_Mutation p.E997K 0.47 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JA-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.62 TCGA-D3-A2JA-06 11 5345263 5345263 C T OR51B2 Missense_Mutation p.E89K 0.68 tolerated(0.07) benign(0.009) TCGA-D3-A2JA-06 11 56000188 56000188 A G OR5T2 Silent p.A158A 0.53 TCGA-D3-A2JA-06 11 56113718 56113718 C T OR8K1 Silent p.F68F 0.57 TCGA-D3-A2JA-06 11 56114096 56114096 C T OR8K1 Silent p.L194L 0.51 TCGA-D3-A2JA-06 11 57003509 57003509 G A APLNR Missense_Mutation p.L324F 0.32 deleterious(0.02) benign(0.018) TCGA-D3-A2JA-06 11 62562463 62562463 C T NXF1 Silent p.R507R 0.53 TCGA-D3-A2JA-06 11 62562464 62562464 C T NXF1 Missense_Mutation p.R507Q 0.53 tolerated(1) benign(0) TCGA-D3-A2JA-06 11 65413395 65413395 G A SIPA1 Silent p.T410T 0.91 TCGA-D3-A2JA-06 11 68153988 68153988 C G LRP5 Missense_Mutation p.A407G 0.61 tolerated(0.4) benign(0.048) TCGA-D3-A2JA-06 11 69063157 69063157 C T MYEOV Silent p.L80L 0.46 TCGA-D3-A2JA-06 11 77728067 77728067 C T KCTD14 Missense_Mutation p.E114K 0.29 tolerated(0.41) possibly_damaging(0.657) TCGA-D3-A2JA-06 11 984647 984647 C T AP2A2 Silent p.I236I 0.46 TCGA-D3-A2JA-06 11 99690330 99690330 T G CNTN5 Missense_Mutation p.I37M 0.16 tolerated_low_confidence(0.71) benign(0.004) TCGA-D3-A2JA-06 12 104138991 104138991 C T STAB2 Silent p.I2024I 0.17 TCGA-D3-A2JA-06 12 105534683 105534683 G A KIAA1033 Missense_Mutation p.V523M 0.17 deleterious(0.02) probably_damaging(0.918) TCGA-D3-A2JA-06 12 105534684 105534684 T A KIAA1033 Missense_Mutation p.V523E 0.18 deleterious(0) probably_damaging(0.911) TCGA-D3-A2JA-06 12 109182215 109182215 G A SSH1 Missense_Mutation p.P900L 0.18 tolerated_low_confidence(0.07) benign(0.005) TCGA-D3-A2JA-06 12 111749989 111749989 C T CUX2 Silent p.I662I 0.27 TCGA-D3-A2JA-06 12 118199237 118199237 G A KSR2 Missense_Mutation p.P189S 0.38 tolerated(0.23) benign(0.01) TCGA-D3-A2JA-06 12 124856641 124856641 G A NCOR2 Missense_Mutation p.P912S 0.18 benign(0.406) TCGA-D3-A2JA-06 12 131498747 131498747 C T GPR133 Silent p.I445I 0.19 TCGA-D3-A2JA-06 12 21069221 21069221 C T SLCO1B3 3'UTR 0.12 TCGA-D3-A2JA-06 12 22486958 22486958 C T ST8SIA1 Missense_Mutation p.R70K 0.31 tolerated(0.5) benign(0.001) TCGA-D3-A2JA-06 12 32900275 32900275 C T YARS2 Missense_Mutation p.G433R 0.30 deleterious(0) possibly_damaging(0.755) TCGA-D3-A2JA-06 12 33579237 33579237 T G SYT10 Missense_Mutation p.E115D 0.20 tolerated(0.51) probably_damaging(0.984) TCGA-D3-A2JA-06 12 46622995 46622995 C T SLC38A1 Missense_Mutation p.M85I 0.31 deleterious(0.02) benign(0.444) TCGA-D3-A2JA-06 12 50642531 50642531 C T LIMA1 Missense_Mutation p.E2K 0.24 deleterious(0) probably_damaging(0.928) TCGA-D3-A2JA-06 12 50642532 50642532 C T LIMA1 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 12 52779191 52779191 G A KRT84 Missense_Mutation p.S60L 0.17 deleterious(0.04) probably_damaging(0.953) TCGA-D3-A2JA-06 12 52840890 52840890 G A KRT6B 3'UTR 0.29 TCGA-D3-A2JA-06 12 52845395 52845395 G A KRT6B Silent p.I156I 0.13 TCGA-D3-A2JA-06 12 53042059 53042059 G A KRT2 Silent p.S340S 0.21 TCGA-D3-A2JA-06 12 53186124 53186124 G A KRT3 Missense_Mutation p.R363C 0.27 deleterious(0.01) possibly_damaging(0.478) TCGA-D3-A2JA-06 12 53670519 53670519 A G ESPL1 Missense_Mutation p.I606V 0.11 tolerated(1) benign(0) TCGA-D3-A2JA-06 12 53918499 53918499 C T ATF7 Missense_Mutation p.R325H 0.29 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JA-06 12 55945560 55945560 G A OR6C4 Missense_Mutation p.E184K 0.23 tolerated_low_confidence(0.49) benign(0.009) TCGA-D3-A2JA-06 12 56625009 56625009 C T SLC39A5 5'UTR 0.29 TCGA-D3-A2JA-06 12 58145436 58145436 T A CDK4 Missense_Mutation p.K22M 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JA-06 12 6457413 6457413 T A SCNN1A Missense_Mutation p.T605S 0.28 tolerated(0.44) benign(0.049) TCGA-D3-A2JA-06 12 6562851 6562851 A T TAPBPL Silent p.P178P 0.34 TCGA-D3-A2JA-06 12 662611 662611 G T B4GALNT3 Missense_Mutation p.V508L 0.37 tolerated(0.43) benign(0) TCGA-D3-A2JA-06 12 81101829 81101829 G A MYF6 Missense_Mutation p.E111K 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JA-06 12 8975215 8975215 C T A2ML1 5'UTR 0.26 TCGA-D3-A2JA-06 12 96415987 96415987 G A LTA4H Missense_Mutation p.R175C 0.26 deleterious(0.01) benign(0.106) TCGA-D3-A2JA-06 13 21371181 21371181 G A XPO4 Nonsense_Mutation p.Q780* 0.21 TCGA-D3-A2JA-06 13 23913792 23913792 A G SACS Missense_Mutation p.L1408P 0.27 probably_damaging(0.999) TCGA-D3-A2JA-06 13 28748517 28748517 A T PAN3 Missense_Mutation p.Y180F 0.15 tolerated_low_confidence(0.11) benign(0.009) TCGA-D3-A2JA-06 13 39262764 39262764 T A FREM2 Missense_Mutation p.M428K 0.31 deleterious(0) benign(0.06) TCGA-D3-A2JA-06 13 49924970 49924970 G A CAB39L Silent p.I158I 0.24 TCGA-D3-A2JA-06 14 106091440 106091440 C T IGHG4 Missense_Mutation p.E152K 0.44 tolerated(0.08) benign(0.008) TCGA-D3-A2JA-06 14 106845747 106845747 G A IGHV3-35 Missense_Mutation p.L10F 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.537) TCGA-D3-A2JA-06 14 107170333 107170333 G T IGHV1-69 Missense_Mutation p.A12E 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-D3-A2JA-06 14 23938904 23938904 G A NGDN 5'UTR 0.22 TCGA-D3-A2JA-06 14 35577291 35577291 A C PPP2R3C Intron 0.19 TCGA-D3-A2JA-06 14 47351265 47351265 G A MDGA2 Missense_Mutation p.R800C 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 14 50824773 50824774 GG A CDKL1 Intron 0.19 TCGA-D3-A2JA-06 14 68029190 68029190 C T PLEKHH1 Missense_Mutation p.S281F 0.21 deleterious_low_confidence(0.02) benign(0.153) TCGA-D3-A2JA-06 14 68029191 68029191 C T PLEKHH1 Silent p.S281S 0.19 TCGA-D3-A2JA-06 14 94750286 94750286 T C SERPINA10 3'UTR 0.12 TCGA-D3-A2JA-06 14 95033392 95033392 G A SERPINA4 Missense_Mutation p.M245I 0.21 deleterious(0.01) possibly_damaging(0.742) TCGA-D3-A2JA-06 15 101887865 101887865 G A PCSK6 Intron 0.15 TCGA-D3-A2JA-06 15 101887866 101887866 G A PCSK6 Intron 0.15 TCGA-D3-A2JA-06 15 25477447 25477447 C T SNORD115-33 3'Flank 0.17 TCGA-D3-A2JA-06 15 26792988 26792988 G A GABRB3 Silent p.F458F 0.20 TCGA-D3-A2JA-06 15 33927852 33927852 C T RYR3 Silent p.I1071I 0.26 TCGA-D3-A2JA-06 15 33954696 33954696 G T RYR3 Silent p.V1655V 0.20 TCGA-D3-A2JA-06 15 35830567 35830567 T C DPH6 Missense_Mutation p.I74V 0.22 deleterious(0) benign(0.199) TCGA-D3-A2JA-06 15 38990376 38990376 C T C15orf53 Missense_Mutation p.T57I 0.24 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-D3-A2JA-06 15 42743290 42743290 T A ZNF106 Nonsense_Mutation p.K371* 0.23 TCGA-D3-A2JA-06 15 50884498 50884498 G A TRPM7 Missense_Mutation p.P1312S 0.24 tolerated_low_confidence(0.4) benign(0.002) TCGA-D3-A2JA-06 15 54307569 54307569 G A UNC13C Silent p.E823E 0.08 TCGA-D3-A2JA-06 15 57535737 57535737 C T TCF12 Missense_Mutation p.S368L 0.26 deleterious(0.03) possibly_damaging(0.69) TCGA-D3-A2JA-06 15 59911856 59911856 C T GCNT3 3'UTR 0.29 TCGA-D3-A2JA-06 15 60907162 60907162 C T RORA Intron 0.22 TCGA-D3-A2JA-06 15 67629324 67629324 G A IQCH Silent p.S133S 0.26 TCGA-D3-A2JA-06 15 71403594 71403594 C G CT62 Missense_Mutation p.G103R 0.21 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JA-06 15 72668395 72668395 G A HEXA 5'UTR 0.35 TCGA-D3-A2JA-06 15 89073862 89073862 G A DET1 Missense_Mutation p.P370S 0.27 tolerated(0.14) possibly_damaging(0.851) TCGA-D3-A2JA-06 16 15224550 15224550 G A RP11-1186N24.5 RNA 0.16 TCGA-D3-A2JA-06 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JA-06 16 2512222 2512222 C T C16orf59 Silent p.L244L 0.25 TCGA-D3-A2JA-06 16 31332564 31332564 G A ITGAM Silent p.R571R 0.23 TCGA-D3-A2JA-06 16 3632685 3632685 G A SLX4 Silent p.S1721S 0.14 TCGA-D3-A2JA-06 16 51173898 51173898 C T SALL1 Silent p.T745T 0.29 TCGA-D3-A2JA-06 16 67913992 67913992 C T EDC4 Missense_Mutation p.P657L 0.11 deleterious(0) possibly_damaging(0.835) TCGA-D3-A2JA-06 16 71571651 71571651 G T CHST4 Silent p.L357L 0.16 TCGA-D3-A2JA-06 16 76528908 76528908 G A CNTNAP4 Missense_Mutation p.G655R 0.22 tolerated(0.26) benign(0.216) TCGA-D3-A2JA-06 16 76569509 76569509 C T CNTNAP4 Silent p.T868T 0.24 TCGA-D3-A2JA-06 16 76572111 76572111 C T CNTNAP4 Missense_Mutation p.H959Y 0.21 tolerated(1) benign(0.049) TCGA-D3-A2JA-06 16 81411074 81411074 A C GAN Missense_Mutation p.H556P 0.24 tolerated(0.28) benign(0.024) TCGA-D3-A2JA-06 16 82101883 82101883 G A HSD17B2 Missense_Mutation p.R125Q 0.21 tolerated(0.09) possibly_damaging(0.627) TCGA-D3-A2JA-06 16 89777064 89777064 G A VPS9D1 Silent p.G396G 0.40 TCGA-D3-A2JA-06 16 9916194 9916194 G A GRIN2A Missense_Mutation p.P699S 0.23 deleterious(0.04) probably_damaging(0.981) TCGA-D3-A2JA-06 17 10424496 10424496 C T MYH2 3'UTR 0.40 TCGA-D3-A2JA-06 17 12903502 12903502 C T ELAC2 Missense_Mutation p.R465K 0.55 tolerated(1) benign(0.001) TCGA-D3-A2JA-06 17 29557909 29557909 C T NF1 Nonsense_Mutation p.Q1055* 0.17 TCGA-D3-A2JA-06 17 2995981 2995981 G A OR1D2 Silent p.L104L 0.47 TCGA-D3-A2JA-06 17 2995982 2995982 G A OR1D2 Silent p.F103F 0.47 TCGA-D3-A2JA-06 17 33454267 33454267 C T FNDC8 Missense_Mutation p.P139L 0.52 tolerated_low_confidence(1) possibly_damaging(0.713) TCGA-D3-A2JA-06 17 33454268 33454268 C G FNDC8 Silent p.P139P 0.52 TCGA-D3-A2JA-06 17 39767318 39767318 C T KRT16 Intron 0.56 TCGA-D3-A2JA-06 17 41345540 41345540 C T NBR1 Missense_Mutation p.P470L 0.62 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 17 42274653 42274653 G A ATXN7L3 Missense_Mutation p.P100L 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JA-06 17 4624283 4624283 G A ARRB2 Silent p.R414R 0.49 TCGA-D3-A2JA-06 17 67146127 67146127 G A ABCA10 Missense_Mutation p.A1492V 0.12 tolerated(0.12) benign(0.111) TCGA-D3-A2JA-06 17 72470746 72470746 C T CD300A Missense_Mutation p.S152L 0.50 tolerated(0.52) benign(0.003) TCGA-D3-A2JA-06 17 72850838 72850838 G A GRIN2C Missense_Mutation p.P132S 0.14 deleterious(0.02) probably_damaging(0.95) TCGA-D3-A2JA-06 17 7324662 7324662 G A SPEM1 Missense_Mutation p.G223E 0.43 tolerated(0.2) probably_damaging(0.998) TCGA-D3-A2JA-06 17 7578196 7578196 A C TP53 Missense_Mutation p.V218G 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 17 7710634 7710634 G A DNAH2 Missense_Mutation p.M3203I 0.45 benign(0.078) TCGA-D3-A2JA-06 17 77768979 77768979 C T CBX8 Missense_Mutation p.D209N 0.48 deleterious(0.01) possibly_damaging(0.539) TCGA-D3-A2JA-06 17 79250839 79250839 A G SLC38A10 Missense_Mutation p.Y241H 0.45 deleterious(0) probably_damaging(0.957) TCGA-D3-A2JA-06 17 80320467 80320467 G A TEX19 Nonsense_Mutation p.W147* 0.50 TCGA-D3-A2JA-06 18 28713961 28713961 G A DSC1 Missense_Mutation p.P670L 0.21 deleterious(0) benign(0.305) TCGA-D3-A2JA-06 18 28725700 28725700 T C DSC1 Silent p.E271E 0.26 TCGA-D3-A2JA-06 18 29052340 29052340 G A DSG3 Missense_Mutation p.G664E 0.25 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JA-06 18 44560437 44560437 C T TCEB3B Missense_Mutation p.G400E 0.16 tolerated(0.07) benign(0.319) TCGA-D3-A2JA-06 18 47088597 47088597 G A LIPG 5'UTR 0.36 TCGA-D3-A2JA-06 18 9887001 9887001 G A TXNDC2 Silent p.K175K 0.29 TCGA-D3-A2JA-06 19 12865723 12865723 G A BEST2 Missense_Mutation p.E172K 0.21 deleterious(0) probably_damaging(0.909) TCGA-D3-A2JA-06 19 12923992 12923992 C T RNASEH2A Silent p.L245L 0.43 TCGA-D3-A2JA-06 19 13915816 13915816 C T ZSWIM4 Missense_Mutation p.S189F 0.23 deleterious(0) benign(0.173) TCGA-D3-A2JA-06 19 15299856 15299856 C T NOTCH3 Missense_Mutation p.R441Q 0.20 tolerated(1) benign(0.044) TCGA-D3-A2JA-06 19 15791260 15791260 G A CYP4F12 Silent p.T152T 0.37 TCGA-D3-A2JA-06 19 17756847 17756847 C T UNC13A Silent p.G706G 0.50 TCGA-D3-A2JA-06 19 1785647 1785647 C T ATP8B3 Missense_Mutation p.E1072K 0.30 tolerated(0.76) benign(0.124) TCGA-D3-A2JA-06 19 18420504 18420504 C T LSM4 Missense_Mutation p.M104I 0.25 tolerated(0.3) benign(0.019) TCGA-D3-A2JA-06 19 18707559 18707559 G A CRLF1 Silent p.A299A 0.51 TCGA-D3-A2JA-06 19 18707560 18707560 G A CRLF1 Missense_Mutation p.A299V 0.51 tolerated(0.09) benign(0.284) TCGA-D3-A2JA-06 19 18897365 18897365 G A COMP Missense_Mutation p.P411S 0.33 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JA-06 19 19032527 19032527 C T DDX49 Silent p.L99L 0.36 TCGA-D3-A2JA-06 19 19168362 19168362 C T ARMC6 Silent p.A477A 0.17 TCGA-D3-A2JA-06 19 22156959 22156959 C T ZNF208 Missense_Mutation p.A293T 0.22 tolerated(0.1) benign(0.415) TCGA-D3-A2JA-06 19 2246990 2246990 C T SF3A2 Missense_Mutation p.A172V 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-D3-A2JA-06 19 34263781 34263781 G A CHST8 Missense_Mutation p.R363H 0.21 tolerated(0.1) benign(0.003) TCGA-D3-A2JA-06 19 36499198 36499198 C T SYNE4 Missense_Mutation p.G67D 0.22 tolerated_low_confidence(0.17) probably_damaging(0.992) TCGA-D3-A2JA-06 19 36499199 36499199 C T SYNE4 Missense_Mutation p.G67S 0.23 tolerated_low_confidence(0.18) probably_damaging(0.986) TCGA-D3-A2JA-06 19 38573337 38573337 G A SIPA1L3 Missense_Mutation p.A378T 0.27 tolerated(0.33) benign(0.05) TCGA-D3-A2JA-06 19 38969090 38969090 C T RYR1 Silent p.N1490N 0.48 TCGA-D3-A2JA-06 19 40095857 40095857 G A LGALS13 Missense_Mutation p.M44I 0.49 tolerated(0.17) benign(0.01) TCGA-D3-A2JA-06 19 40408528 40408528 C T FCGBP Silent p.G1437G 0.32 TCGA-D3-A2JA-06 19 41447372 41447372 G A AC092071.1 5'Flank 0.37 TCGA-D3-A2JA-06 19 42224866 42224866 C T CEACAM5 Missense_Mutation p.S599F 0.40 tolerated(0.28) probably_damaging(0.985) TCGA-D3-A2JA-06 19 42381285 42381285 G A CD79A 5'UTR 0.14 TCGA-D3-A2JA-06 19 44242349 44242349 G A SMG9 Silent p.I278I 0.29 TCGA-D3-A2JA-06 19 44500692 44500711 GAGAGAAACCATTCAAATGT - ZNF155 Frame_Shift_Del p.E240Afs*9 0.38 TCGA-D3-A2JA-06 19 45810756 45810756 C T CKM Silent p.E310E 0.24 TCGA-D3-A2JA-06 19 46307974 46307974 C T RSPH6A Missense_Mutation p.E397K 0.45 tolerated(0.11) benign(0.196) TCGA-D3-A2JA-06 19 46443037 46443037 T G NOVA2 3'UTR 0.33 TCGA-D3-A2JA-06 19 46443038 46443038 G T NOVA2 3'UTR 0.33 TCGA-D3-A2JA-06 19 47542741 47542741 C T NPAS1 Missense_Mutation p.P294L 0.14 tolerated(0.08) possibly_damaging(0.798) TCGA-D3-A2JA-06 19 49376550 49376550 C T PPP1R15A Silent p.F20F 0.41 TCGA-D3-A2JA-06 19 49477978 49477978 G A GYS1 Missense_Mutation p.P441S 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 19 50983963 50983963 G A EMC10 Silent p.V176V 0.24 TCGA-D3-A2JA-06 19 50983964 50983964 G A EMC10 Missense_Mutation p.D177N 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A2JA-06 19 54215520 54215520 G A MIR521-2 5'Flank 0.40 TCGA-D3-A2JA-06 19 55439137 55439137 C T NLRP7 Nonsense_Mutation p.W939* 0.29 TCGA-D3-A2JA-06 19 56244333 56244333 C T NLRP9 Silent p.R288R 0.45 TCGA-D3-A2JA-06 19 56370377 56370377 G A NLRP4 Missense_Mutation p.E540K 0.15 tolerated(0.65) benign(0.046) TCGA-D3-A2JA-06 19 56466504 56466504 G A NLRP8 Missense_Mutation p.M360I 0.44 tolerated(0.19) benign(0) TCGA-D3-A2JA-06 19 56691971 56691971 C T GALP Missense_Mutation p.T35I 0.32 deleterious(0) possibly_damaging(0.575) TCGA-D3-A2JA-06 19 56701318 56701318 C T ZSCAN5B Missense_Mutation p.V456I 0.36 tolerated(0.07) benign(0.395) TCGA-D3-A2JA-06 19 57327090 57327090 C G PEG3 Missense_Mutation p.S907T 0.36 tolerated(0.2) benign(0.08) TCGA-D3-A2JA-06 19 58565009 58565009 C T ZSCAN1 Nonsense_Mutation p.Q273* 0.16 TCGA-D3-A2JA-06 19 6501346 6501346 G A TUBB4A Missense_Mutation p.R77C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-D3-A2JA-06 19 7809871 7809871 C T CD209 Missense_Mutation p.E286K 0.15 deleterious(0.04) benign(0.173) TCGA-D3-A2JA-06 19 8656924 8656924 C T ADAMTS10 Missense_Mutation p.G551R 0.24 deleterious(0) possibly_damaging(0.876) TCGA-D3-A2JA-06 19 9064474 9064474 G A MUC16 Missense_Mutation p.P7658S 0.24 unknown(0) TCGA-D3-A2JA-06 19 9083586 9083586 C T MUC16 Silent p.S2743S 0.36 TCGA-D3-A2JA-06 19 9086812 9086812 C T MUC16 Missense_Mutation p.R1668K 0.21 unknown(0) TCGA-D3-A2JA-06 1 110294734 110294734 G T EPS8L3 Silent p.P440P 0.20 TCGA-D3-A2JA-06 1 112329705 112329705 G T KCND3 Missense_Mutation p.T377K 0.42 deleterious(0) possibly_damaging(0.832) TCGA-D3-A2JA-06 1 114512713 114512713 G A HIPK1 Silent p.L969L 0.23 TCGA-D3-A2JA-06 1 11580888 11580888 C T PTCHD2 Missense_Mutation p.S782F 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JA-06 1 12785679 12785679 G A AADACL3 Missense_Mutation p.E257K 0.22 tolerated(0.06) probably_damaging(0.964) TCGA-D3-A2JA-06 1 12854129 12854129 G A PRAMEF1 Missense_Mutation p.G118E 0.07 tolerated(0.16) benign(0.006) TCGA-D3-A2JA-06 1 149763097 149763097 G A FCGR1A 3'UTR 0.09 TCGA-D3-A2JA-06 1 151156850 151156850 G A VPS72 Nonsense_Mutation p.Q169* 0.19 TCGA-D3-A2JA-06 1 152733110 152733110 C T KPRP Missense_Mutation p.P349L 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 1 155264147 155264147 C T PKLR Missense_Mutation p.G332D 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 1 156713108 156713108 G A HDGF 3'Flank 0.26 TCGA-D3-A2JA-06 1 160340656 160340656 C T NHLH1 Silent p.A45A 0.24 TCGA-D3-A2JA-06 1 16907915 16907915 C T NBPF1 Missense_Mutation p.R460K 0.10 deleterious(0.05) probably_damaging(0.977) TCGA-D3-A2JA-06 1 170695431 170695431 C T PRRX1 Missense_Mutation p.S163F 0.44 deleterious(0) probably_damaging(0.974) TCGA-D3-A2JA-06 1 172017777 172017777 G A DNM3 Missense_Mutation p.A408T 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JA-06 1 176050324 176050324 G A RFWD2 Missense_Mutation p.A414V 0.14 deleterious(0.01) benign(0.147) TCGA-D3-A2JA-06 1 176760578 176760578 G A PAPPA2 Silent p.L1660L 0.42 TCGA-D3-A2JA-06 1 178489992 178489992 C T TEX35 Missense_Mutation p.H176Y 0.31 deleterious_low_confidence(0.01) benign(0.016) TCGA-D3-A2JA-06 1 178834935 178834935 T G ANGPTL1 Intron 0.17 TCGA-D3-A2JA-06 1 17934436 17934436 C T ARHGEF10L Silent p.V191V 0.45 TCGA-D3-A2JA-06 1 181727964 181727964 C T CACNA1E Missense_Mutation p.S1522F 0.51 deleterious(0.05) possibly_damaging(0.788) TCGA-D3-A2JA-06 1 183933102 183933102 G A COLGALT2 Silent p.P295P 0.58 TCGA-D3-A2JA-06 1 196577427 196577427 C T KCNT2 Missense_Mutation p.E5K 0.23 deleterious_low_confidence(0.01) benign(0.03) TCGA-D3-A2JA-06 1 196876452 196876452 C T CFHR4 Missense_Mutation p.S207L 0.21 tolerated(0.21) probably_damaging(0.928) TCGA-D3-A2JA-06 1 196977721 196977721 C T CFHR5 Nonsense_Mutation p.Q540* 0.17 TCGA-D3-A2JA-06 1 198711073 198711073 G A PTPRC Missense_Mutation p.D827N 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JA-06 1 201039473 201039473 C T CACNA1S Missense_Mutation p.E763K 0.18 deleterious(0) benign(0.297) TCGA-D3-A2JA-06 1 202104325 202104325 C T ARL8A Missense_Mutation p.R155Q 0.08 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JA-06 1 202276493 202276493 C T LGR6 Missense_Mutation p.P415L 0.10 deleterious(0.03) benign(0.232) TCGA-D3-A2JA-06 1 202915610 202915610 G A ADIPOR1 Silent p.F129F 0.17 TCGA-D3-A2JA-06 1 206318330 206318330 C T CTSE Missense_Mutation p.P30S 0.44 tolerated(0.19) benign(0.047) TCGA-D3-A2JA-06 1 212964981 212964981 G A NSL1 Missense_Mutation p.S42L 0.37 tolerated(0.09) benign(0.024) TCGA-D3-A2JA-06 1 220332762 220332762 A T RAB3GAP2 Missense_Mutation p.V1076D 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 1 22413183 22413183 C T CDC42 Missense_Mutation p.H104Y 0.15 tolerated(0.12) benign(0.098) TCGA-D3-A2JA-06 1 22973793 22973793 G A C1QC Silent p.G85G 0.47 TCGA-D3-A2JA-06 1 229770694 229770694 C T URB2 Missense_Mutation p.L112F 0.27 tolerated(0.3) benign(0.049) TCGA-D3-A2JA-06 1 231557539 231557539 G T EGLN1 Silent p.R32R 0.53 TCGA-D3-A2JA-06 1 235599136 235599136 C T TBCE Silent p.L272L 0.36 TCGA-D3-A2JA-06 1 236917271 236917271 G A ACTN2 Missense_Mutation p.D622N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JA-06 1 236925828 236925828 G A ACTN2 Missense_Mutation p.R865K 0.19 tolerated(0.09) benign(0.01) TCGA-D3-A2JA-06 1 236925829 236925829 G A ACTN2 Silent p.R865R 0.19 TCGA-D3-A2JA-06 1 23763160 23763160 G A ASAP3 Intron 0.41 TCGA-D3-A2JA-06 1 237791188 237791188 C G RYR2 Missense_Mutation p.A2083G 0.32 possibly_damaging(0.497) TCGA-D3-A2JA-06 1 238090463 238090463 C T RP11-193H5.1 RNA 0.58 TCGA-D3-A2JA-06 1 24106421 24106421 G A PITHD1 Missense_Mutation p.E104K 0.45 tolerated(0.9) benign(0.086) TCGA-D3-A2JA-06 1 2430220 2430220 T C PLCH2 Missense_Mutation p.L769P 0.27 deleterious(0) possibly_damaging(0.612) TCGA-D3-A2JA-06 1 247875240 247875240 G A OR6F1 Missense_Mutation p.A273V 0.40 tolerated(1) benign(0.012) TCGA-D3-A2JA-06 1 248201713 248201713 C T OR2L2 Silent p.I48I 0.19 TCGA-D3-A2JA-06 1 248458364 248458364 C T OR2T12 Missense_Mutation p.D173N 0.24 tolerated(0.73) benign(0.171) TCGA-D3-A2JA-06 1 26288401 26288401 G A PAFAH2 3'UTR 0.42 TCGA-D3-A2JA-06 1 27101084 27101084 C T ARID1A Missense_Mutation p.P1456S 0.15 unknown(0) TCGA-D3-A2JA-06 1 27685037 27685037 G A MAP3K6 Silent p.L883L 0.45 TCGA-D3-A2JA-06 1 34330204 34330204 G A HMGB4 Missense_Mutation p.E138K 0.58 deleterious(0.02) possibly_damaging(0.528) TCGA-D3-A2JA-06 1 34330205 34330205 A C HMGB4 Missense_Mutation p.E138A 0.58 deleterious(0.01) benign(0.441) TCGA-D3-A2JA-06 1 35227190 35227190 A T GJB4 Missense_Mutation p.N112I 0.25 deleterious(0.02) benign(0.14) TCGA-D3-A2JA-06 1 3638759 3638759 G A TP73 Missense_Mutation p.D202N 0.20 deleterious(0.01) possibly_damaging(0.722) TCGA-D3-A2JA-06 1 47746374 47746374 C T STIL Missense_Mutation p.E586K 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2JA-06 1 53684129 53684129 G A C1orf123 Silent p.S62S 0.30 TCGA-D3-A2JA-06 1 64605887 64605887 G A ROR1 Missense_Mutation p.D236N 0.55 tolerated(0.08) probably_damaging(0.989) TCGA-D3-A2JA-06 1 94485300 94485300 C T ABCA4 Silent p.V1678V 0.53 TCGA-D3-A2JA-06 20 13850804 13850804 C T SEL1L2 Missense_Mutation p.G384R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 20 36869541 36869541 G A KIAA1755 Missense_Mutation p.S331F 0.16 tolerated(0.44) benign(0.01) TCGA-D3-A2JA-06 20 39750645 39750645 G A TOP1 Splice_Site p.X682_splice 0.44 TCGA-D3-A2JA-06 20 39750646 39750646 G A TOP1 Silent p.K682K 0.44 TCGA-D3-A2JA-06 20 47274699 47274699 G A PREX1 Missense_Mutation p.S650F 0.47 tolerated(0.08) benign(0.013) TCGA-D3-A2JA-06 20 48098557 48098557 G A KCNB1 Missense_Mutation p.T154I 0.12 tolerated(0.09) probably_damaging(0.914) TCGA-D3-A2JA-06 20 57430019 57430019 G A GNAS Missense_Mutation p.E567K 0.41 deleterious_low_confidence(0.04) benign(0.258) TCGA-D3-A2JA-06 20 5963742 5963742 C T MCM8 Missense_Mutation p.S555F 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 20 60911420 60911420 G A LAMA5 Missense_Mutation p.P767S 0.06 possibly_damaging(0.574) TCGA-D3-A2JA-06 20 60911421 60911421 G A LAMA5 Silent p.S766S 0.06 TCGA-D3-A2JA-06 20 61162152 61162152 G A C20orf166 Intron 0.48 TCGA-D3-A2JA-06 20 62891364 62891364 G T PCMTD2 Missense_Mutation p.D16Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JA-06 20 9519977 9519977 C G PAK7 3'UTR 0.64 TCGA-D3-A2JA-06 21 19775840 19775840 C T TMPRSS15 Missense_Mutation p.G34R 0.24 deleterious(0) probably_damaging(0.972) TCGA-D3-A2JA-06 21 27062285 27062285 G A JAM2 Missense_Mutation p.G81S 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A2JA-06 21 45564843 45564843 G A C21orf33 3'UTR 0.23 TCGA-D3-A2JA-06 21 45960014 45960014 G A KRTAP10-1 Missense_Mutation p.S7F 0.23 deleterious(0) possibly_damaging(0.485) TCGA-D3-A2JA-06 21 47783511 47783511 G A PCNT Silent p.E757E 0.28 TCGA-D3-A2JA-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.07 TCGA-D3-A2JA-06 22 23077428 23077428 A C IGLV2-18 Missense_Mutation p.I69L 0.32 deleterious_low_confidence(0.02) benign(0.214) TCGA-D3-A2JA-06 22 26702042 26702042 G A SEZ6L Silent p.T482T 0.41 TCGA-D3-A2JA-06 22 30866026 30866026 G A SEC14L3 Missense_Mutation p.L72F 0.28 deleterious(0.04) benign(0.013) TCGA-D3-A2JA-06 22 37603254 37603254 C T SSTR3 Missense_Mutation p.E197K 0.31 deleterious(0.02) benign(0.144) TCGA-D3-A2JA-06 22 38010228 38010228 C T GGA1 Silent p.L25L 0.30 TCGA-D3-A2JA-06 22 45691447 45691447 G A UPK3A Missense_Mutation p.M237I 0.28 tolerated(0.18) benign(0.106) TCGA-D3-A2JA-06 22 50555768 50555768 C T MOV10L1 Missense_Mutation p.T481I 0.14 tolerated(0.26) possibly_damaging(0.512) TCGA-D3-A2JA-06 2 10101265 10101265 C T GRHL1 Silent p.V123V 0.17 TCGA-D3-A2JA-06 2 107460106 107460106 C T ST6GAL2 Missense_Mutation p.E110K 0.64 benign(0.193) TCGA-D3-A2JA-06 2 125204364 125204364 C T CNTNAP5 Silent p.P256P 0.38 TCGA-D3-A2JA-06 2 125555877 125555877 T C CNTNAP5 Missense_Mutation p.V1065A 0.13 tolerated(1) benign(0.001) TCGA-D3-A2JA-06 2 127808019 127808019 G A BIN1 Missense_Mutation p.P551L 0.56 deleterious(0.02) possibly_damaging(0.645) TCGA-D3-A2JA-06 2 128747140 128747140 G A SAP130 Missense_Mutation p.S619L 0.60 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D3-A2JA-06 2 141215198 141215198 C T LRP1B Silent p.G3216G 0.18 TCGA-D3-A2JA-06 2 1480872 1480872 C T TPO Silent p.A278A 0.17 TCGA-D3-A2JA-06 2 155711624 155711624 G A KCNJ3 Missense_Mutation p.M435I 0.43 deleterious_low_confidence(0.01) benign(0.001) TCGA-D3-A2JA-06 2 15615855 15615855 G A NBAS Missense_Mutation p.P433S 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A2JA-06 2 16086120 16086120 C A MYCN Silent p.S432S 0.19 TCGA-D3-A2JA-06 2 160898621 160898621 A C PLA2R1 Silent p.R194R 0.26 TCGA-D3-A2JA-06 2 170103467 170103467 G A LRP2 Missense_Mutation p.P980S 0.23 benign(0.282) TCGA-D3-A2JA-06 2 179396737 179396737 C T TTN Missense_Mutation p.E34869K 0.20 TCGA-D3-A2JA-06 2 179639101 179639101 C T TTN Missense_Mutation p.G2297E 0.29 TCGA-D3-A2JA-06 2 179640134 179640134 C T TTN Missense_Mutation p.A2153T 0.25 TCGA-D3-A2JA-06 2 179658128 179658128 C T TTN Intron 0.23 TCGA-D3-A2JA-06 2 183707234 183707234 C T FRZB Silent p.K188K 0.30 TCGA-D3-A2JA-06 2 190922360 190922360 G A MSTN Missense_Mutation p.P251L 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A2JA-06 2 212295699 212295699 C T ERBB4 Missense_Mutation p.E872K 0.33 deleterious(0) possibly_damaging(0.857) TCGA-D3-A2JA-06 2 21232161 21232161 C T APOB Missense_Mutation p.D2527N 0.20 probably_damaging(0.996) TCGA-D3-A2JA-06 2 214354720 214354720 C T SPAG16 Missense_Mutation p.P326S 0.51 tolerated(0.11) benign(0.39) TCGA-D3-A2JA-06 2 220432111 220432111 G A OBSL1 Missense_Mutation p.A574V 0.36 tolerated(0.1) benign(0.103) TCGA-D3-A2JA-06 2 236949435 236949435 C T AGAP1 Missense_Mutation p.S614L 0.24 deleterious(0) benign(0.433) TCGA-D3-A2JA-06 2 26700578 26700578 C T OTOF Missense_Mutation p.E752K 0.23 tolerated(0.2) benign(0.057) TCGA-D3-A2JA-06 2 27715590 27715590 C T FNDC4 Silent p.K204K 0.39 TCGA-D3-A2JA-06 2 38178943 38178943 T G RMDN2 Silent p.T195T 0.33 TCGA-D3-A2JA-06 2 43926991 43926991 C T PLEKHH2 Silent p.S298S 0.32 TCGA-D3-A2JA-06 2 46607658 46607658 C T EPAS1 Missense_Mutation p.S616F 0.34 tolerated(0.64) possibly_damaging(0.519) TCGA-D3-A2JA-06 2 54115873 54115873 G A PSME4 Missense_Mutation p.S1458F 0.26 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JA-06 2 64160857 64160857 G A VPS54 Silent p.S563S 0.38 TCGA-D3-A2JA-06 2 71913752 71913752 G A DYSF 3'UTR 0.13 TCGA-D3-A2JA-06 2 73316513 73316513 G A RAB11FIP5 Intron 0.16 TCGA-D3-A2JA-06 2 86839319 86839319 T A RNF103 Missense_Mutation p.I149L 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A2JA-06 2 98171534 98171534 T C ANKRD36B RNA 0.40 TCGA-D3-A2JA-06 2 99342746 99342746 G A MGAT4A Missense_Mutation p.S17F 0.31 tolerated(0.45) benign(0.002) TCGA-D3-A2JA-06 3 101574609 101574609 C T NFKBIZ Missense_Mutation p.H563Y 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JA-06 3 108363192 108363192 C T DZIP3 Silent p.T441T 0.42 TCGA-D3-A2JA-06 3 108688522 108688522 G A MORC1 Silent p.F866F 0.37 TCGA-D3-A2JA-06 3 108776192 108776192 G A MORC1 Silent p.S391S 0.27 TCGA-D3-A2JA-06 3 11301853 11301853 G A HRH1 Missense_Mutation p.R377K 0.54 tolerated(0.58) benign(0.006) TCGA-D3-A2JA-06 3 119334882 119334882 G A PLA1A Missense_Mutation p.G230R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 3 120394654 120394654 G A HGD Silent p.S24S 0.42 TCGA-D3-A2JA-06 3 120977927 120977927 C T STXBP5L Nonsense_Mutation p.Q624* 0.61 TCGA-D3-A2JA-06 3 122419650 122419650 C G PARP14 Missense_Mutation p.A750G 0.44 deleterious(0) possibly_damaging(0.848) TCGA-D3-A2JA-06 3 125741705 125741705 G A SLC41A3 Silent p.P223P 0.21 TCGA-D3-A2JA-06 3 12950932 12950932 A C IQSEC1 Missense_Mutation p.Y821D 0.48 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JA-06 3 132247127 132247127 T C DNAJC13 Missense_Mutation p.I2159T 0.39 deleterious(0) possibly_damaging(0.616) TCGA-D3-A2JA-06 3 133558452 133558452 G A RAB6B Missense_Mutation p.S100F 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 3 137964016 137964017 CC T ARMC8 Frame_Shift_Del p.R362Gfs*10 0.16 TCGA-D3-A2JA-06 3 138739346 138739346 G A PRR23B Missense_Mutation p.A53V 0.31 deleterious(0.04) possibly_damaging(0.817) TCGA-D3-A2JA-06 3 150908586 150908586 C G MED12L Missense_Mutation p.F612L 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JA-06 3 164739027 164739027 C T SI Missense_Mutation p.G1082R 0.20 tolerated(0.05) possibly_damaging(0.48) TCGA-D3-A2JA-06 3 168807883 168807883 C T MECOM Silent p.K979K 0.35 TCGA-D3-A2JA-06 3 168845762 168845762 T A MECOM Missense_Mutation p.T110S 0.36 tolerated(1) possibly_damaging(0.458) TCGA-D3-A2JA-06 3 172835539 172835539 C T SPATA16 Intron 0.15 TCGA-D3-A2JA-06 3 180377473 180377473 T C CCDC39 Missense_Mutation p.S201G 0.40 deleterious(0.01) benign(0.373) TCGA-D3-A2JA-06 3 183551569 183551569 G A PARL Silent p.I291I 0.21 TCGA-D3-A2JA-06 3 192973511 192973511 C T HRASLS Silent p.F129F 0.22 TCGA-D3-A2JA-06 3 192973512 192973512 C T HRASLS Missense_Mutation p.R130C 0.22 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JA-06 3 196050869 196050869 C T TM4SF19 Splice_Site p.X150_splice 0.23 TCGA-D3-A2JA-06 3 25640942 25640942 G A TOP2B Missense_Mutation p.S1560F 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-D3-A2JA-06 3 36899476 36899476 G A TRANK1 Silent p.F535F 0.30 TCGA-D3-A2JA-06 3 37574877 37574877 T G ITGA9 Missense_Mutation p.C482W 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 3 50403276 50403276 G A CACNA2D2 Silent p.F967F 0.19 TCGA-D3-A2JA-06 3 51746528 51746528 A G GRM2 Missense_Mutation p.S164G 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 3 69230725 69230725 G A FRMD4B Missense_Mutation p.L726F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 3 89456425 89456425 C T EPHA3 Missense_Mutation p.S534F 0.39 tolerated(0.41) probably_damaging(0.994) TCGA-D3-A2JA-06 3 95374249 95374249 A T MTHFD2P1 RNA 0.52 TCGA-D3-A2JA-06 3 96963139 96963139 C T EPHA6 Intron 0.38 TCGA-D3-A2JA-06 3 97124098 97124098 G A EPHA6 Missense_Mutation p.E571K 0.20 deleterious(0) benign(0.317) TCGA-D3-A2JA-06 4 102951268 102951268 G A BANK1 Silent p.E582E 0.34 TCGA-D3-A2JA-06 4 106766676 106766676 C T GSTCD Missense_Mutation p.S615F 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JA-06 4 110682768 110682768 C T CFI Missense_Mutation p.G188E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 4 140811906 140811906 G A MAML3 Silent p.P228P 0.25 TCGA-D3-A2JA-06 4 147830247 147830247 C T TTC29 Missense_Mutation p.E111K 0.27 deleterious(0.05) benign(0.418) TCGA-D3-A2JA-06 4 147830248 147830248 C T TTC29 Silent p.L110L 0.28 TCGA-D3-A2JA-06 4 169013826 169013826 C T ANXA10 5'UTR 0.22 TCGA-D3-A2JA-06 4 169229235 169229235 G A DDX60 Silent p.L62L 0.19 TCGA-D3-A2JA-06 4 169343713 169343713 C T DDX60L Missense_Mutation p.D736N 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 4 183676186 183676186 G T TENM3 Missense_Mutation p.V1556L 0.21 tolerated(0.25) benign(0.006) TCGA-D3-A2JA-06 4 185684408 185684408 G A ACSL1 Silent p.G478G 0.25 TCGA-D3-A2JA-06 4 25673285 25673285 G A SLC34A2 Silent p.T330T 0.32 TCGA-D3-A2JA-06 4 3208296 3208296 C T HTT Missense_Mutation p.S1931F 0.31 possibly_damaging(0.841) TCGA-D3-A2JA-06 4 42895515 42895515 G A GRXCR1 Missense_Mutation p.D78N 0.24 tolerated(0.25) benign(0.059) TCGA-D3-A2JA-06 4 55961114 55961114 C T KDR Silent p.G942G 0.15 TCGA-D3-A2JA-06 4 62863907 62863907 C T LPHN3 Missense_Mutation p.L1039F 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 4 69342025 69342025 C T TMPRSS11E Silent p.I192I 0.22 TCGA-D3-A2JA-06 4 77661150 77661150 T G SHROOM3 Silent p.A608A 0.19 TCGA-D3-A2JA-06 4 9892272 9892272 G A SLC2A9 Missense_Mutation p.L393F 0.15 tolerated(0.27) benign(0.026) TCGA-D3-A2JA-06 5 121787024 121787024 C T SNCAIP Missense_Mutation p.P828S 0.28 tolerated(0.44) benign(0.001) TCGA-D3-A2JA-06 5 125971803 125971803 G A C5orf48 Missense_Mutation p.G92E 0.21 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JA-06 5 128864234 128864234 C T ADAMTS19 Missense_Mutation p.H392Y 0.32 tolerated(0.06) benign(0.369) TCGA-D3-A2JA-06 5 130764859 130764859 G A CTC-432M15.3 Missense_Mutation p.P1556S 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JA-06 5 13814899 13814899 G A DNAH5 Silent p.L2349L 0.25 TCGA-D3-A2JA-06 5 139742515 139742515 C T SLC4A9 Missense_Mutation p.R300C 0.25 deleterious(0.03) benign(0.036) TCGA-D3-A2JA-06 5 140182108 140182108 C T PCDHA3 Silent p.S442S 0.21 TCGA-D3-A2JA-06 5 140802161 140802161 C T PCDHGA11 Missense_Mutation p.S456F 0.22 deleterious_low_confidence(0.01) benign(0.025) TCGA-D3-A2JA-06 5 14610433 14610433 G A FAM105A 3'UTR 0.29 TCGA-D3-A2JA-06 5 149511644 149511644 G A PDGFRB Silent p.L381L 0.27 TCGA-D3-A2JA-06 5 150027788 150027788 C T SYNPO Missense_Mutation p.P228L 0.24 deleterious(0.03) benign(0.011) TCGA-D3-A2JA-06 5 156770010 156770010 G A FNDC9 Missense_Mutation p.P179S 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A2JA-06 5 167642052 167642052 C T TENM2 Missense_Mutation p.P1285S 0.15 deleterious(0.01) possibly_damaging(0.501) TCGA-D3-A2JA-06 5 168098445 168098445 C T SLIT3 Silent p.T1295T 0.27 TCGA-D3-A2JA-06 5 170148820 170148820 C T KCNIP1 Intron 0.21 TCGA-D3-A2JA-06 5 170148821 170148821 C T KCNIP1 Intron 0.20 TCGA-D3-A2JA-06 5 180326146 180326146 G A BTNL8 5'UTR 0.40 TCGA-D3-A2JA-06 5 34880300 34880300 T C TTC23L Missense_Mutation p.Y322H 0.27 deleterious(0.04) benign(0.323) TCGA-D3-A2JA-06 5 36253797 36253797 T C RANBP3L Missense_Mutation p.I398M 0.27 deleterious(0.02) possibly_damaging(0.83) TCGA-D3-A2JA-06 5 40998125 40998125 G A MROH2B 3'UTR 0.23 TCGA-D3-A2JA-06 5 43245803 43245803 C T NIM1K 5'UTR 0.21 TCGA-D3-A2JA-06 5 55204257 55204257 G A IL31RA Intron 0.24 TCGA-D3-A2JA-06 5 60369027 60369027 C T NDUFAF2 Missense_Mutation p.P68L 0.24 deleterious(0.03) possibly_damaging(0.585) TCGA-D3-A2JA-06 5 620264 620264 C T CEP72 Silent p.L97L 0.14 TCGA-D3-A2JA-06 5 63871726 63871726 G A RGS7BP Missense_Mutation p.R153Q 0.23 tolerated_low_confidence(0.07) unknown(0) TCGA-D3-A2JA-06 5 66416869 66416869 C T MAST4 Nonsense_Mutation p.R562* 0.20 TCGA-D3-A2JA-06 5 66461599 66461599 C T MAST4 Missense_Mutation p.P2198S 0.44 benign(0.106) TCGA-D3-A2JA-06 5 66461600 66461600 C T MAST4 Missense_Mutation p.P2198L 0.44 possibly_damaging(0.743) TCGA-D3-A2JA-06 5 68695977 68695977 C T RAD17 Silent p.T569T 0.22 TCGA-D3-A2JA-06 6 117678018 117678018 G A ROS1 Silent p.I1305I 0.46 TCGA-D3-A2JA-06 6 123101437 123101437 C A FABP7 Silent p.G25G 0.43 TCGA-D3-A2JA-06 6 123118096 123118096 C T SMPDL3A Missense_Mutation p.H152Y 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 6 128294823 128294823 C T PTPRK Silent p.T1379T 0.45 TCGA-D3-A2JA-06 6 131958601 131958601 T A ENPP3 Missense_Mutation p.I26N 0.55 deleterious(0.01) benign(0.125) TCGA-D3-A2JA-06 6 152652612 152652612 G A SYNE1 Missense_Mutation p.S4403L 0.63 benign(0.075) TCGA-D3-A2JA-06 6 15533539 15533539 T A DTNBP1 Missense_Mutation p.E200V 0.53 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JA-06 6 155451385 155451385 C T TIAM2 Missense_Mutation p.S343F 0.47 tolerated(0.09) benign(0.005) TCGA-D3-A2JA-06 6 25926018 25926018 C T SLC17A2 Missense_Mutation p.G3R 0.41 tolerated(0.13) benign(0.065) TCGA-D3-A2JA-06 6 31593915 31593915 C T PRRC2A Nonsense_Mutation p.Q320* 0.46 TCGA-D3-A2JA-06 6 39512353 39512353 C T KIF6 Silent p.L468L 0.41 TCGA-D3-A2JA-06 6 43188593 43188593 G C CUL9 Missense_Mutation p.G2178R 0.31 tolerated(0.12) probably_damaging(1) TCGA-D3-A2JA-06 6 47576933 47576933 C T CD2AP Silent p.I569I 0.45 TCGA-D3-A2JA-06 6 54806762 54806762 G A FAM83B Missense_Mutation p.G998E 0.44 tolerated(0.09) probably_damaging(0.948) TCGA-D3-A2JA-06 6 56327921 56327921 G A DST Missense_Mutation p.P5018S 0.42 probably_damaging(0.999) TCGA-D3-A2JA-06 6 72596778 72596778 C T RIMS1 Missense_Mutation p.P18S 0.17 tolerated_low_confidence(0.63) probably_damaging(0.932) TCGA-D3-A2JA-06 6 84233463 84233463 A G PRSS35 Silent p.Q101Q 0.55 TCGA-D3-A2JA-06 7 100320703 100320703 C T EPO Missense_Mutation p.R177W 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 7 102235757 102235757 G A RASA4 Silent p.L356L 0.29 TCGA-D3-A2JA-06 7 120935499 120935499 G A CPED1 Silent p.V958V 0.38 TCGA-D3-A2JA-06 7 124469334 124469334 G A POT1 Missense_Mutation p.S523L 0.30 tolerated(0.28) benign(0.116) TCGA-D3-A2JA-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JA-06 7 142119839 142119839 G A TRBV7-7 Missense_Mutation p.R110C 0.28 deleterious(0) possibly_damaging(0.627) TCGA-D3-A2JA-06 7 142448446 142448446 G A TRBV29-1 Missense_Mutation p.V14M 0.33 tolerated(0.09) benign(0.014) TCGA-D3-A2JA-06 7 142563272 142563272 C T EPHB6 Missense_Mutation p.P330L 0.35 tolerated(0.58) possibly_damaging(0.555) TCGA-D3-A2JA-06 7 142658181 142658181 C T KEL Silent p.E78E 0.13 TCGA-D3-A2JA-06 7 143054391 143054391 C T FAM131B Missense_Mutation p.E198K 0.32 tolerated(0.13) probably_damaging(0.997) TCGA-D3-A2JA-06 7 143453407 143453407 G A CTAGE6 Missense_Mutation p.H449Y 0.09 tolerated(0.33) benign(0.008) TCGA-D3-A2JA-06 7 150174875 150174875 G A GIMAP8 3'UTR 0.31 TCGA-D3-A2JA-06 7 150325570 150325570 C T GIMAP6 Missense_Mutation p.R39K 0.30 tolerated(0.72) benign(0.003) TCGA-D3-A2JA-06 7 154754118 154754118 G A PAXIP1 Silent p.V680V 0.32 TCGA-D3-A2JA-06 7 157903556 157903556 G A PTPRN2 Silent p.L536L 0.37 TCGA-D3-A2JA-06 7 22532979 22532979 G C STEAP1B Silent p.S187S 0.23 TCGA-D3-A2JA-06 7 2566817 2566817 C T LFNG Missense_Mutation p.P371S 0.19 tolerated(0.35) benign(0.013) TCGA-D3-A2JA-06 7 27140593 27140593 G A HOXA2 Missense_Mutation p.P295S 0.36 deleterious(0.03) benign(0.23) TCGA-D3-A2JA-06 7 32109987 32109987 C T PDE1C Intron 0.29 TCGA-D3-A2JA-06 7 36552800 36552800 G A AOAH 3'UTR 0.19 TCGA-D3-A2JA-06 7 4247841 4247841 G T SDK1 Silent p.L1775L 0.16 TCGA-D3-A2JA-06 7 43484697 43484697 T C HECW1 Silent p.N642N 0.39 TCGA-D3-A2JA-06 7 43917430 43917430 G A URGCP Silent p.P544P 0.25 TCGA-D3-A2JA-06 7 43917431 43917431 G A URGCP Missense_Mutation p.P544L 0.25 tolerated(1) benign(0.008) TCGA-D3-A2JA-06 7 5104669 5104669 G - RBAK Frame_Shift_Del p.H529Tfs*178 0.26 TCGA-D3-A2JA-06 7 53103940 53103940 C T POM121L12 Silent p.F192F 0.33 TCGA-D3-A2JA-06 7 57188840 57188840 G A ZNF479 Silent p.T94T 0.23 TCGA-D3-A2JA-06 7 6731272 6731272 T C ZNF12 Missense_Mutation p.E434G 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 7 82545198 82545198 T C PCLO Missense_Mutation p.Y4035C 0.32 unknown(0) TCGA-D3-A2JA-06 7 82584073 82584073 C T PCLO Missense_Mutation p.E2066K 0.28 unknown(0) TCGA-D3-A2JA-06 7 82595691 82595691 G A PCLO Missense_Mutation p.P1138L 0.31 unknown(0) TCGA-D3-A2JA-06 7 82764399 82764399 G A PCLO Nonsense_Mutation p.R823* 0.34 TCGA-D3-A2JA-06 7 92080050 92080050 C T GATAD1 Silent p.I137I 0.28 TCGA-D3-A2JA-06 7 94913414 94913414 C T PPP1R9A Silent p.F1127F 0.32 TCGA-D3-A2JA-06 7 99375658 99375658 C T CYP3A4 Missense_Mutation p.V71M 0.42 tolerated(0.56) benign(0.015) TCGA-D3-A2JA-06 7 99693042 99693042 G A MCM7 Silent p.S549S 0.41 TCGA-D3-A2JA-06 8 106813401 106813401 G A ZFPM2 Missense_Mutation p.R364Q 0.50 tolerated(0.23) probably_damaging(0.996) TCGA-D3-A2JA-06 8 110451278 110451278 G A PKHD1L1 Missense_Mutation p.D1305N 0.51 tolerated(0.39) benign(0.002) TCGA-D3-A2JA-06 8 116599332 116599332 G A TRPS1 Silent p.L866L 0.42 TCGA-D3-A2JA-06 8 120429133 120429133 G A NOV Silent p.L78L 0.51 TCGA-D3-A2JA-06 8 131795943 131795943 G A ADCY8 Missense_Mutation p.R1088W 0.49 deleterious(0) benign(0) TCGA-D3-A2JA-06 8 14095160 14095160 C T SGCZ Missense_Mutation p.R122K 0.30 tolerated(0.36) benign(0.013) TCGA-D3-A2JA-06 8 144945716 144945716 G A EPPK1 Missense_Mutation p.P569L 0.15 probably_damaging(0.987) TCGA-D3-A2JA-06 8 144945717 144945717 G A EPPK1 Missense_Mutation p.P569S 0.16 probably_damaging(0.98) TCGA-D3-A2JA-06 8 17063206 17063206 C A ZDHHC2 Silent p.L173L 0.37 TCGA-D3-A2JA-06 8 17206493 17206493 G A MTMR7 Missense_Mutation p.P189L 0.30 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JA-06 8 195641 195641 A G ZNF596 Missense_Mutation p.N265S 0.28 tolerated(0.66) benign(0.133) TCGA-D3-A2JA-06 8 24250842 24250842 A G ADAMDEC1 Missense_Mutation p.Q92R 0.18 tolerated(0.11) benign(0.026) TCGA-D3-A2JA-06 8 39467047 39467047 C T ADAM18 Missense_Mutation p.S104L 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A2JA-06 8 39792675 39792675 G A IDO2 5'UTR 0.57 TCGA-D3-A2JA-06 8 55540389 55540389 C T RP1 Missense_Mutation p.A1316V 0.19 tolerated(0.22) benign(0.035) TCGA-D3-A2JA-06 8 57353679 57353679 G A PENK 3'UTR 0.23 TCGA-D3-A2JA-06 8 6782349 6782349 G A DEFA6 Silent p.C98C 0.15 TCGA-D3-A2JA-06 8 6793409 6793409 C T DEFA4 3'UTR 0.39 TCGA-D3-A2JA-06 8 76465345 76465345 C T HNF4G Silent p.V176V 0.55 TCGA-D3-A2JA-06 8 8235332 8235332 G A SGK223 Missense_Mutation p.P196L 0.23 benign(0.255) TCGA-D3-A2JA-06 8 95186333 95186333 C T CDH17 Missense_Mutation p.E194K 0.38 tolerated(0.28) benign(0.1) TCGA-D3-A2JA-06 8 95539167 95539167 G A KIAA1429 Silent p.T435T 0.52 TCGA-D3-A2JA-06 9 104449345 104449345 G A GRIN3A Silent p.F279F 0.49 TCGA-D3-A2JA-06 9 125391383 125391383 G A OR1B1 Silent p.A144A 0.55 TCGA-D3-A2JA-06 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.43 tolerated_low_confidence(0.54) benign(0.005) TCGA-D3-A2JA-06 9 136251455 136251455 T C C9orf96 Missense_Mutation p.F92L 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 9 138516048 138516048 G A GLT6D1 Silent p.F242F 0.42 TCGA-D3-A2JA-06 9 139100772 139100772 G A QSOX2 Silent p.L633L 0.48 TCGA-D3-A2JA-06 9 139370482 139370482 C T SEC16A Missense_Mutation p.S529N 0.52 tolerated(0.06) benign(0.018) TCGA-D3-A2JA-06 9 21441071 21441071 G A IFNA1 Missense_Mutation p.E189K 0.34 tolerated(0.6) benign(0.046) TCGA-D3-A2JA-06 9 36105242 36105242 C T RECK Missense_Mutation p.P513L 0.41 tolerated(0.79) benign(0) TCGA-D3-A2JA-06 9 5924688 5924688 C T KIAA2026 Missense_Mutation p.D886N 0.17 tolerated(0.08) possibly_damaging(0.548) TCGA-D3-A2JA-06 9 74842988 74842988 G A GDA Intron 0.44 TCGA-D3-A2JA-06 X 106845830 106845830 C T FRMPD3 Missense_Mutation p.P1554S 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JA-06 X 109694200 109694200 C T RGAG1 Missense_Mutation p.P119S 0.52 tolerated(0.05) probably_damaging(0.965) TCGA-D3-A2JA-06 X 117959096 117959096 C T ZCCHC12 Intron 0.55 TCGA-D3-A2JA-06 X 123805540 123805540 C T TENM1 Silent p.E387E 0.56 TCGA-D3-A2JA-06 X 130411868 130411868 C T IGSF1 Nonsense_Mutation p.W766* 0.60 TCGA-D3-A2JA-06 X 140785595 140785595 C T SPANXD 3'UTR 0.40 TCGA-D3-A2JA-06 X 140969259 140969259 C T MAGEC3 Missense_Mutation p.L196F 0.45 deleterious(0) benign(0.022) TCGA-D3-A2JA-06 X 152773823 152773823 C T BGN Missense_Mutation p.P343S 0.48 tolerated(0.06) benign(0.208) TCGA-D3-A2JA-06 X 153694361 153694361 G A PLXNA3 Silent p.V872V 0.59 TCGA-D3-A2JA-06 X 37028775 37028775 G A FAM47C Silent p.P764P 0.57 TCGA-D3-A2JA-06 X 49957642 49957642 G A AKAP4 Silent p.T574T 0.57 TCGA-D3-A2JA-06 X 73040652 73040652 C T XIST RNA 0.56 TCGA-D3-A2JA-06 X 73066030 73066030 C T XIST RNA 0.51 TCGA-D3-A2JB-06 10 24498034 24498034 G T KIAA1217 5'Flank 0.16 TCGA-D3-A2JB-06 11 75480152 75480152 G A DGAT2 Missense_Mutation p.R39K 0.12 tolerated_low_confidence(0.81) benign(0) TCGA-D3-A2JB-06 12 1137146 1137146 G A ERC1 Missense_Mutation p.R26H 0.14 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JB-06 12 6805635 6805635 C A PIANP Silent p.V193V 0.10 TCGA-D3-A2JB-06 14 20813596 20813596 C G PARP2 Missense_Mutation p.D95E 0.07 deleterious(0) probably_damaging(0.956) TCGA-D3-A2JB-06 14 69922518 69922518 C G SLC39A9 Missense_Mutation p.H210D 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-D3-A2JB-06 17 7750643 7750643 C T KDM6B Missense_Mutation p.A377V 0.14 unknown(0) TCGA-D3-A2JB-06 19 23578145 23578145 G A ZNF91 Silent p.T4T 0.10 TCGA-D3-A2JB-06 19 36036834 36036834 C A TMEM147 Missense_Mutation p.T41N 0.11 deleterious(0.02) possibly_damaging(0.894) TCGA-D3-A2JB-06 1 202736112 202736112 G C KDM5B Missense_Mutation p.S218C 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A2JB-06 20 23028840 23028840 G T THBD Missense_Mutation p.D434E 0.10 tolerated(0.1) possibly_damaging(0.73) TCGA-D3-A2JB-06 21 33976511 33976511 A G AP000275.65 Missense_Mutation p.V153A 0.28 tolerated(0.36) possibly_damaging(0.789) TCGA-D3-A2JB-06 2 11273454 11273458 TTGCA ACACACTTGCAC C2orf50 5'UTR 0.14 TCGA-D3-A2JB-06 6 37446287 37446287 G T CMTR1 Missense_Mutation p.R752S 0.12 deleterious(0.01) benign(0.164) TCGA-D3-A2JB-06 7 3998595 3998595 C A SDK1 Silent p.R395R 0.09 TCGA-D3-A2JB-06 X 100667886 100667886 G T HNRNPH2 Missense_Mutation p.D304Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JB-06 X 115303663 115303663 T G AGTR2 Missense_Mutation p.L44V 0.17 tolerated(0.52) benign(0.13) TCGA-D3-A2JB-06 X 153130422 153130422 G A L1CAM Missense_Mutation p.S967F 0.13 tolerated(0.69) benign(0.072) TCGA-D3-A2JB-06 X 70342382 70342382 G A MED12 Missense_Mutation p.E425K 0.10 probably_damaging(1) TCGA-D3-A2JC-06 10 102749036 102749036 C T C10orf2 Missense_Mutation p.R357C 0.28 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A2JC-06 10 105926335 105926335 T C WDR96 Missense_Mutation p.T984A 0.22 tolerated(0.32) benign(0.003) TCGA-D3-A2JC-06 10 114224329 114224329 C T VTI1A Silent p.V59V 0.60 TCGA-D3-A2JC-06 10 118896004 118896004 C T VAX1 Silent p.Q136Q 0.42 TCGA-D3-A2JC-06 10 81706217 81706217 C A SFTPD Missense_Mutation p.G67C 0.60 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JC-06 10 85984282 85984282 G A LRIT2 Silent p.G233G 0.47 TCGA-D3-A2JC-06 10 87966247 87966247 G A GRID1 Missense_Mutation p.P132S 0.43 tolerated(0.64) probably_damaging(0.999) TCGA-D3-A2JC-06 10 95721207 95721207 C T PIPSL RNA 0.54 TCGA-D3-A2JC-06 10 98469424 98469424 C T PIK3AP1 Silent p.E110E 0.61 TCGA-D3-A2JC-06 11 101818765 101818765 C T KIAA1377 Missense_Mutation p.S133F 0.45 tolerated(1) benign(0) TCGA-D3-A2JC-06 11 117310603 117310603 C T DSCAML1 Missense_Mutation p.M1364I 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-D3-A2JC-06 11 119993696 119993696 G A TRIM29 Silent p.T467T 0.46 TCGA-D3-A2JC-06 11 121393299 121393299 C T SORL1 Missense_Mutation p.S470F 0.40 deleterious(0.01) benign(0.309) TCGA-D3-A2JC-06 11 125281707 125281707 C T PKNOX2 Silent p.V294V 0.41 TCGA-D3-A2JC-06 11 130339294 130339294 G A ADAMTS15 Silent p.V560V 0.38 TCGA-D3-A2JC-06 11 134047153 134047153 G A NCAPD3 Silent p.I994I 0.16 TCGA-D3-A2JC-06 11 14277214 14277214 C T SPON1 RNA 0.29 TCGA-D3-A2JC-06 11 17485076 17485076 C T ABCC8 Missense_Mutation p.G163D 0.29 tolerated(0.06) benign(0.128) TCGA-D3-A2JC-06 11 18062252 18062252 G A TPH1 Missense_Mutation p.L20F 0.24 deleterious(0.03) possibly_damaging(0.543) TCGA-D3-A2JC-06 11 18591901 18591901 G A UEVLD Missense_Mutation p.R73C 0.36 tolerated(0.2) benign(0.02) TCGA-D3-A2JC-06 11 2427989 2427989 G A TRPM5 Silent p.V1051V 0.26 TCGA-D3-A2JC-06 11 3661298 3661298 G A ART5 Missense_Mutation p.R121W 0.11 tolerated(0.17) benign(0.082) TCGA-D3-A2JC-06 11 46392868 46392868 C T DGKZ Silent p.F380F 0.27 TCGA-D3-A2JC-06 11 56237838 56237838 A G OR5M3 Silent p.L46L 0.19 TCGA-D3-A2JC-06 11 5809845 5809845 G T OR52N1 Missense_Mutation p.L68I 0.12 deleterious(0.01) possibly_damaging(0.45) TCGA-D3-A2JC-06 11 61508748 61508748 C T DAGLA Missense_Mutation p.P700S 0.34 tolerated_low_confidence(0.09) benign(0.002) TCGA-D3-A2JC-06 11 64359091 64359091 G A SLC22A12 Silent p.T21T 0.32 TCGA-D3-A2JC-06 11 65266106 65266106 T C MALAT1 RNA 0.21 TCGA-D3-A2JC-06 11 66359836 66359836 G A CCDC87 Silent p.F217F 0.18 TCGA-D3-A2JC-06 11 688032 688032 C T DEAF1 Silent p.L181L 0.17 TCGA-D3-A2JC-06 11 7488027 7488027 G A SYT9 Missense_Mutation p.R491Q 0.16 deleterious(0) benign(0.008) TCGA-D3-A2JC-06 11 7960524 7960524 G A OR10A3 Missense_Mutation p.P182S 0.38 deleterious(0.01) benign(0.438) TCGA-D3-A2JC-06 11 92620171 92620171 G A FAT3 Missense_Mutation p.G4315R 0.45 benign(0.051) TCGA-D3-A2JC-06 12 100811903 100811903 C T SLC17A8 Missense_Mutation p.P465L 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 12 100928758 100928758 G A NR1H4 Missense_Mutation p.G240D 0.14 deleterious(0.02) possibly_damaging(0.638) TCGA-D3-A2JC-06 12 108091332 108091332 C A PWP1 Silent p.L234L 0.10 TCGA-D3-A2JC-06 12 113826404 113826404 C T PLBD2 Silent p.F581F 0.35 TCGA-D3-A2JC-06 12 123187185 123187185 G A HCAR2 Missense_Mutation p.R216W 0.14 deleterious(0) possibly_damaging(0.636) TCGA-D3-A2JC-06 12 124156062 124156062 C T TCTN2 Missense_Mutation p.P31S 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 12 14766074 14766074 C T GUCY2C Missense_Mutation p.D1067N 0.10 deleterious_low_confidence(0.04) benign(0.049) TCGA-D3-A2JC-06 12 22078906 22078906 C T ABCC9 Missense_Mutation p.E126K 0.21 deleterious(0) probably_damaging(0.956) TCGA-D3-A2JC-06 12 23893916 23893916 A T SOX5 Missense_Mutation p.L209Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JC-06 12 2797832 2797832 G A CACNA1C Missense_Mutation p.G2050S 0.50 tolerated_low_confidence(0.49) benign(0) TCGA-D3-A2JC-06 12 40714913 40714913 C A LRRK2 Missense_Mutation p.P1698H 0.08 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JC-06 12 41463790 41463790 G T CNTN1 Missense_Mutation p.G1004C 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.781) TCGA-D3-A2JC-06 12 49334741 49334741 G A ARF3 Silent p.I46I 0.38 TCGA-D3-A2JC-06 12 53096993 53096993 C T KRT77 Missense_Mutation p.G76R 0.31 deleterious(0.03) possibly_damaging(0.638) TCGA-D3-A2JC-06 12 53452857 53452857 C T TENC1 Silent p.L488L 0.13 TCGA-D3-A2JC-06 12 68051851 68051851 C T DYRK2 Silent p.Y388Y 0.39 TCGA-D3-A2JC-06 12 70954528 70954528 G A PTPRB Missense_Mutation p.P1452L 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JC-06 12 75875633 75875633 C T GLIPR1 Missense_Mutation p.A65V 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JC-06 12 75875634 75875634 C T GLIPR1 Silent p.A65A 0.21 TCGA-D3-A2JC-06 12 7651771 7651771 C T CD163 Silent p.L157L 0.15 TCGA-D3-A2JC-06 12 80623040 80623040 C T OTOGL Missense_Mutation p.H156Y 0.36 deleterious(0) probably_damaging(0.941) TCGA-D3-A2JC-06 12 97043781 97043781 G A C12orf55 Silent p.K1601K 0.27 TCGA-D3-A2JC-06 13 100635375 100635375 C T ZIC2 Missense_Mutation p.H353Y 0.43 deleterious(0.01) benign(0.008) TCGA-D3-A2JC-06 13 28610179 28610179 C T FLT3 Silent p.R437R 0.48 TCGA-D3-A2JC-06 13 77792023 77792023 C G MYCBP2 Silent p.T965T 0.11 TCGA-D3-A2JC-06 13 99368193 99368193 C A SLC15A1 Missense_Mutation p.G221V 0.11 tolerated(0.13) benign(0.158) TCGA-D3-A2JC-06 14 101512845 101512845 C T MIR487B RNA 0.20 TCGA-D3-A2JC-06 14 104492471 104492471 C T TDRD9 Nonsense_Mutation p.Q1007* 0.17 TCGA-D3-A2JC-06 14 20612119 20612119 C T OR4N5 Silent p.F75F 0.45 TCGA-D3-A2JC-06 14 24799092 24799092 G A ADCY4 Silent p.N397N 0.38 TCGA-D3-A2JC-06 14 33014963 33014963 C T AKAP6 Silent p.T368T 0.43 TCGA-D3-A2JC-06 14 36039821 36039821 A G RALGAPA1 Splice_Site p.X1993_splice 0.14 TCGA-D3-A2JC-06 14 51079995 51079995 C T ATL1 Nonsense_Mutation p.R217* 0.17 TCGA-D3-A2JC-06 14 74179518 74179518 C T PNMA1 Silent p.V275V 0.09 TCGA-D3-A2JC-06 14 91791183 91791183 C T CCDC88C Missense_Mutation p.E428K 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 15 34544408 34544408 G A SLC12A6 Silent p.I432I 0.32 TCGA-D3-A2JC-06 15 48537068 48537068 A G SLC12A1 Silent p.E473E 0.24 TCGA-D3-A2JC-06 15 48634177 48634177 C T DUT Intron 0.66 TCGA-D3-A2JC-06 15 51772772 51772772 C T DMXL2 Missense_Mutation p.M2177I 0.31 deleterious(0) benign(0.364) TCGA-D3-A2JC-06 15 54914531 54914531 C T UNC13C Missense_Mutation p.S2038F 0.21 tolerated_low_confidence(0.07) benign(0.309) TCGA-D3-A2JC-06 15 55652369 55652369 T C CCPG1 Silent p.R534R 0.29 TCGA-D3-A2JC-06 15 79068669 79068669 G A ADAMTS7 Missense_Mutation p.L523F 0.49 tolerated(1) benign(0.008) TCGA-D3-A2JC-06 16 11012339 11012339 C T CIITA Silent p.L1035L 0.18 TCGA-D3-A2JC-06 16 12061597 12061597 G A TNFRSF17 Missense_Mutation p.E150K 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JC-06 16 20497957 20497957 G A ACSM2A Missense_Mutation p.R564Q 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JC-06 16 29825713 29825713 C A PRRT2 Silent p.A313A 0.10 TCGA-D3-A2JC-06 16 3169723 3169723 C G ZNF205 Missense_Mutation p.H354Q 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 16 4922917 4922917 G A UBN1 Missense_Mutation p.G580E 0.29 deleterious(0.01) possibly_damaging(0.816) TCGA-D3-A2JC-06 16 9857193 9857193 G A GRIN2A Missense_Mutation p.S1403L 0.39 tolerated(0.71) benign(0.221) TCGA-D3-A2JC-06 17 11835419 11835419 G A DNAH9 Missense_Mutation p.R4065Q 0.30 possibly_damaging(0.737) TCGA-D3-A2JC-06 17 11865375 11865375 G A DNAH9 Nonsense_Mutation p.W4345* 0.27 TCGA-D3-A2JC-06 17 1946172 1946172 C T OVCA2 Missense_Mutation p.P153L 0.17 tolerated(0.06) benign(0.016) TCGA-D3-A2JC-06 17 3030838 3030838 C T OR1G1 Missense_Mutation p.G3E 0.53 tolerated(0.82) benign(0) TCGA-D3-A2JC-06 17 30348853 30348853 G A LRRC37B Missense_Mutation p.D230N 0.33 tolerated(0.2) possibly_damaging(0.889) TCGA-D3-A2JC-06 17 39620561 39620561 C T KRT32 Silent p.R281R 0.28 TCGA-D3-A2JC-06 17 41143305 41143305 C T RUNDC1 Missense_Mutation p.P472S 0.29 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JC-06 17 4805160 4805160 G A C17orf107 3'UTR 0.25 TCGA-D3-A2JC-06 17 50008490 50008490 G A CA10 Missense_Mutation p.P47S 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JC-06 17 56274326 56274326 G A EPX Silent p.K276K 0.39 TCGA-D3-A2JC-06 17 60799913 60799913 C T MARCH10 Missense_Mutation p.G717D 0.44 tolerated(0.15) benign(0.055) TCGA-D3-A2JC-06 17 80049132 80049132 G A FASN Silent p.P486P 0.19 TCGA-D3-A2JC-06 17 8050864 8050864 G A PER1 Missense_Mutation p.P474L 0.21 deleterious(0.04) benign(0.075) TCGA-D3-A2JC-06 19 36047894 36047894 G A ATP4A Missense_Mutation p.A597V 0.36 tolerated(1) benign(0.044) TCGA-D3-A2JC-06 19 37642442 37642442 G C ZNF585A 3'UTR 0.24 TCGA-D3-A2JC-06 19 40890035 40890035 G A HIPK4 Silent p.F159F 0.36 TCGA-D3-A2JC-06 19 4510880 4510880 G A PLIN4 Missense_Mutation p.S1017F 0.40 deleterious(0.01) benign(0.052) TCGA-D3-A2JC-06 19 51874966 51874966 G A NKG7 3'UTR 0.42 TCGA-D3-A2JC-06 19 53056926 53056926 C T ZNF808 Missense_Mutation p.H253Y 0.26 tolerated(0.05) probably_damaging(0.935) TCGA-D3-A2JC-06 19 54849719 54849719 C T LILRA4 Silent p.Q101Q 0.36 TCGA-D3-A2JC-06 19 55450285 55450285 C T NLRP7 Missense_Mutation p.M634I 0.32 tolerated(0.16) benign(0) TCGA-D3-A2JC-06 19 6182918 6182918 A G ACSBG2 Missense_Mutation p.K355E 0.30 tolerated(1) possibly_damaging(0.622) TCGA-D3-A2JC-06 19 9071877 9071877 G A MUC16 Missense_Mutation p.P5190L 0.32 unknown(0) TCGA-D3-A2JC-06 19 9071878 9071878 G A MUC16 Missense_Mutation p.P5190S 0.31 unknown(0) TCGA-D3-A2JC-06 19 9086131 9086131 G A MUC16 Missense_Mutation p.S1895F 0.28 unknown(0) TCGA-D3-A2JC-06 19 9325375 9325375 G A OR7D4 Silent p.L47L 0.28 TCGA-D3-A2JC-06 1 110019425 110019425 C T SYPL2 Silent p.P94P 0.29 TCGA-D3-A2JC-06 1 110030389 110030389 G A ATXN7L2 Silent p.G221G 0.23 TCGA-D3-A2JC-06 1 112308795 112308795 C A DDX20 Silent p.I583I 0.28 TCGA-D3-A2JC-06 1 114380409 114380409 G A PTPN22 Missense_Mutation p.S538L 0.53 tolerated(0.08) benign(0.073) TCGA-D3-A2JC-06 1 118537072 118537072 G A SPAG17 Missense_Mutation p.P1712L 0.32 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JC-06 1 12943102 12943102 G A PRAMEF4 Silent p.F38F 0.53 TCGA-D3-A2JC-06 1 144994742 144994742 C T PDE4DIP 5'UTR 0.10 TCGA-D3-A2JC-06 1 153277455 153277455 G A PGLYRP3 Missense_Mutation p.S115F 0.45 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JC-06 1 156552866 156552866 A T TTC24 Missense_Mutation p.S315C 0.24 tolerated(0.41) possibly_damaging(0.729) TCGA-D3-A2JC-06 1 15819362 15819378 CAGGCCTCAGCCTCTTT - CASP9 3'UTR 0.32 TCGA-D3-A2JC-06 1 158298010 158298010 G A CD1B 3'UTR 0.30 TCGA-D3-A2JC-06 1 158735788 158735788 G A OR6N1 Missense_Mutation p.P229S 0.30 tolerated(0.06) benign(0.06) TCGA-D3-A2JC-06 1 181680183 181680183 C T CACNA1E Silent p.Y383Y 0.29 TCGA-D3-A2JC-06 1 186158678 186158678 G A HMCN1 Missense_Mutation p.E5526K 0.47 probably_damaging(0.931) TCGA-D3-A2JC-06 1 18808522 18808522 G A KLHDC7A Silent p.P349P 0.16 TCGA-D3-A2JC-06 1 197112543 197112543 G A ASPM Missense_Mutation p.S280F 0.22 tolerated(0.51) benign(0.023) TCGA-D3-A2JC-06 1 200014572 200014572 G A NR5A2 Missense_Mutation p.G108E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 1 201058478 201058478 G A CACNA1S Missense_Mutation p.H270Y 0.29 tolerated(0.79) benign(0.148) TCGA-D3-A2JC-06 1 207741289 207741289 C T CR1 Missense_Mutation p.T1358M 0.29 tolerated(0.25) benign(0.022) TCGA-D3-A2JC-06 1 207741369 207741369 C T CR1 Missense_Mutation p.P1385S 0.22 tolerated(0.08) possibly_damaging(0.902) TCGA-D3-A2JC-06 1 247201303 247201303 G A ZNF670 Silent p.F206F 0.24 TCGA-D3-A2JC-06 1 247588393 247588393 C T NLRP3 Missense_Mutation p.R550C 0.43 tolerated(0.12) benign(0) TCGA-D3-A2JC-06 1 248685145 248685145 C T OR2G6 Silent p.L66L 0.33 TCGA-D3-A2JC-06 1 43783328 43783328 G A TIE1 Missense_Mutation p.G905E 0.59 deleterious(0) probably_damaging(0.947) TCGA-D3-A2JC-06 1 66083654 66083654 C T LEPR Silent p.I740I 0.51 TCGA-D3-A2JC-06 1 68914352 68914352 C T RPE65 Missense_Mutation p.E17K 0.48 tolerated(0.49) benign(0.024) TCGA-D3-A2JC-06 1 70740419 70740419 G A ANKRD13C Missense_Mutation p.P460S 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JC-06 1 89849796 89849796 G A GBP6 Missense_Mutation p.R538K 0.50 tolerated(0.16) benign(0.016) TCGA-D3-A2JC-06 20 31608184 31608184 G A BPIFB2 Silent p.G377G 0.47 TCGA-D3-A2JC-06 20 33875157 33875157 C T FAM83C Silent p.E475E 0.55 TCGA-D3-A2JC-06 20 36758746 36758746 C T TGM2 Missense_Mutation p.E647K 0.31 tolerated(0.14) benign(0.052) TCGA-D3-A2JC-06 20 40944528 40944528 G A PTPRT Silent p.L658L 0.23 TCGA-D3-A2JC-06 20 44511763 44511763 C T ZSWIM1 Nonsense_Mutation p.Q178* 0.51 TCGA-D3-A2JC-06 20 44520573 44520573 G A CTSA Silent p.K89K 0.49 TCGA-D3-A2JC-06 20 48522829 48522829 G A SPATA2 Missense_Mutation p.S297L 0.08 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JC-06 20 55099991 55099991 C T FAM209A Missense_Mutation p.R43W 0.22 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JC-06 20 55204608 55204608 G A TFAP2C Nonsense_Mutation p.W3* 0.14 TCGA-D3-A2JC-06 20 60348124 60348124 G A CDH4 Silent p.P154P 0.46 TCGA-D3-A2JC-06 20 61143472 61143472 G A C20orf166 5'Flank 0.15 TCGA-D3-A2JC-06 21 41416118 41416118 G A DSCAM Missense_Mutation p.P1757L 0.37 deleterious(0.01) benign(0.392) TCGA-D3-A2JC-06 22 29083937 29083937 G A CHEK2 Missense_Mutation p.A570V 0.48 tolerated(0.3) benign(0.005) TCGA-D3-A2JC-06 22 37891864 37891864 C T CARD10 Missense_Mutation p.D736N 0.47 deleterious(0) probably_damaging(0.931) TCGA-D3-A2JC-06 22 44342112 44342112 C T PNPLA3 Silent p.S432S 0.22 TCGA-D3-A2JC-06 22 51043341 51043341 G C MAPK8IP2 Missense_Mutation p.E537D 0.40 tolerated(0.33) benign(0.005) TCGA-D3-A2JC-06 22 51044096 51044096 G A MAPK8IP2 Missense_Mutation p.G649R 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JC-06 2 116534832 116534832 G A DPP10 Missense_Mutation p.E428K 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-D3-A2JC-06 2 131520228 131520228 G A AMER3 Missense_Mutation p.G195R 0.31 deleterious(0.04) benign(0.272) TCGA-D3-A2JC-06 2 135625089 135625089 C T ACMSD Intron 0.24 TCGA-D3-A2JC-06 2 136873472 136873472 G A CXCR4 Missense_Mutation p.S13L 0.23 tolerated(0.25) benign(0.001) TCGA-D3-A2JC-06 2 138771544 138771544 G A HNMT Nonsense_Mutation p.W241* 0.39 TCGA-D3-A2JC-06 2 166172203 166172203 G A SCN2A Missense_Mutation p.G536S 0.29 tolerated(0.98) benign(0.032) TCGA-D3-A2JC-06 2 167334209 167334209 C T SCN7A 5'UTR 0.45 TCGA-D3-A2JC-06 2 179499341 179499341 A T TTN Missense_Mutation p.F14056Y 0.16 TCGA-D3-A2JC-06 2 189858984 189858984 C T COL3A1 Missense_Mutation p.P407S 0.25 unknown(0) TCGA-D3-A2JC-06 2 202136345 202136346 - T CASP8 Splice_Site p.X196_splice 0.32 TCGA-D3-A2JC-06 2 202519625 202519625 C T MPP4 Missense_Mutation p.G439E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 2 209010708 209010708 G A CRYGB Silent p.G14G 0.26 TCGA-D3-A2JC-06 2 219209742 219209742 G A PNKD 3'UTR 0.42 TCGA-D3-A2JC-06 2 233899575 233899575 C T NEU2 Silent p.A317A 0.56 TCGA-D3-A2JC-06 2 44065607 44065607 G A ABCG5 Intron 0.47 TCGA-D3-A2JC-06 3 10127572 10127572 G A FANCD2 Missense_Mutation p.G1101R 0.31 tolerated(0.13) benign(0.029) TCGA-D3-A2JC-06 3 111849397 111849397 C T GCSAM Intron 0.16 TCGA-D3-A2JC-06 3 121616254 121616254 C T SLC15A2 Silent p.F71F 0.23 TCGA-D3-A2JC-06 3 124211700 124211700 A - KALRN Frame_Shift_Del p.P1600Qfs*78 0.08 TCGA-D3-A2JC-06 3 130716571 130716571 G T ATP2C1 Missense_Mutation p.G823W 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JC-06 3 136002690 136002690 G A PCCB Silent p.T205T 0.22 TCGA-D3-A2JC-06 3 136002691 136002691 G A PCCB Missense_Mutation p.A206T 0.20 deleterious_low_confidence(0.01) benign(0.367) TCGA-D3-A2JC-06 3 141595712 141595712 G A ATP1B3 Silent p.P23P 0.12 TCGA-D3-A2JC-06 3 146167065 146167065 G A PLSCR2 Silent p.N264N 0.51 TCGA-D3-A2JC-06 3 160122245 160122245 C T SMC4 Nonsense_Mutation p.R214* 0.12 TCGA-D3-A2JC-06 3 16216760 16216760 C T GALNT15 Silent p.H34H 0.35 TCGA-D3-A2JC-06 3 164793789 164793789 C T SI Silent p.K4K 0.48 TCGA-D3-A2JC-06 3 164905886 164905886 C T SLITRK3 Silent p.K911K 0.43 TCGA-D3-A2JC-06 3 3887120 3887120 G A LRRN1 Silent p.L265L 0.22 TCGA-D3-A2JC-06 3 51308301 51308301 C T DOCK3 Missense_Mutation p.T804I 0.45 tolerated(0.05) benign(0.432) TCGA-D3-A2JC-06 3 73432850 73432850 C T PDZRN3 Missense_Mutation p.G956D 0.09 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JC-06 4 100201389 100201389 G A ADH1A Silent p.I292I 0.43 TCGA-D3-A2JC-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JC-06 4 122831455 122831455 A T TRPC3 Missense_Mutation p.M549K 0.11 deleterious(0) probably_damaging(0.965) TCGA-D3-A2JC-06 4 126411473 126411473 C T FAT4 Missense_Mutation p.S4499F 0.15 possibly_damaging(0.663) TCGA-D3-A2JC-06 4 56823443 56823443 C T CEP135 Missense_Mutation p.P176L 0.15 tolerated(1) probably_damaging(0.918) TCGA-D3-A2JC-06 4 69093675 69093675 C T TMPRSS11B Missense_Mutation p.R402Q 0.13 deleterious(0.04) benign(0.095) TCGA-D3-A2JC-06 4 8417561 8417561 G A ACOX3 Missense_Mutation p.P104S 0.34 tolerated(0.47) benign(0.002) TCGA-D3-A2JC-06 4 84353404 84353404 G A HELQ Missense_Mutation p.P689S 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JC-06 4 9828021 9828021 T G SLC2A9 Nonstop_Mutation p.*541Yext*27 0.26 TCGA-D3-A2JC-06 5 13692245 13692245 C T DNAH5 Splice_Site p.X4575_splice 0.56 TCGA-D3-A2JC-06 5 13708438 13708438 C T DNAH5 Missense_Mutation p.E4378K 0.17 possibly_damaging(0.621) TCGA-D3-A2JC-06 5 140221057 140221057 G A PCDHA8 Missense_Mutation p.D51N 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D3-A2JC-06 5 140682809 140682809 G A SLC25A2 Silent p.G208G 0.37 TCGA-D3-A2JC-06 5 154181827 154181827 G A LARP1 Silent p.G582G 0.39 TCGA-D3-A2JC-06 5 154181828 154181828 G C LARP1 Missense_Mutation p.D583H 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 5 180429669 180429669 C T BTNL3 Intron 0.24 TCGA-D3-A2JC-06 5 2748559 2748559 C T IRX2 Silent p.L421L 0.37 TCGA-D3-A2JC-06 5 32230401 32230401 C T MTMR12 Missense_Mutation p.R576K 0.51 tolerated(0.4) benign(0.075) TCGA-D3-A2JC-06 5 32235160 32235160 C T MTMR12 Missense_Mutation p.E474K 0.59 deleterious(0) possibly_damaging(0.878) TCGA-D3-A2JC-06 5 35806995 35806995 G A SPEF2 Missense_Mutation p.E1733K 0.32 tolerated(0.75) benign(0.137) TCGA-D3-A2JC-06 5 38485927 38485927 C T LIFR Missense_Mutation p.E831K 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A2JC-06 5 54696147 54696147 C T SKIV2L2 Silent p.V793V 0.24 TCGA-D3-A2JC-06 5 637700 637700 C T CEP72 Missense_Mutation p.P325S 0.50 tolerated(0.08) benign(0.005) TCGA-D3-A2JC-06 5 76264654 76264654 G A CRHBP Missense_Mutation p.E305K 0.18 deleterious(0) probably_damaging(0.921) TCGA-D3-A2JC-06 5 7832061 7832061 C T C5orf49 Missense_Mutation p.D116N 0.24 tolerated(0.11) possibly_damaging(0.72) TCGA-D3-A2JC-06 5 79025256 79025256 G A CMYA5 Missense_Mutation p.G223E 0.34 probably_damaging(0.972) TCGA-D3-A2JC-06 6 122743912 122743912 G T HSF2 Nonsense_Mutation p.E294* 0.09 TCGA-D3-A2JC-06 6 32170129 32170129 G A NOTCH4 Missense_Mutation p.S1160F 0.48 tolerated(0.26) possibly_damaging(0.83) TCGA-D3-A2JC-06 6 40360531 40360531 G A LRFN2 Silent p.I507I 0.56 TCGA-D3-A2JC-06 6 49660571 49660571 G A CRISP2 Missense_Mutation p.S216F 0.31 deleterious(0.01) possibly_damaging(0.757) TCGA-D3-A2JC-06 6 94120517 94120517 G A EPHA7 Silent p.S178S 0.37 TCGA-D3-A2JC-06 7 100184267 100184267 C T FBXO24 5'Flank 0.17 TCGA-D3-A2JC-06 7 103205799 103205799 C T RELN Silent p.T1712T 0.27 TCGA-D3-A2JC-06 7 11209072 11209072 T C PHF14 Silent p.N649N 0.26 TCGA-D3-A2JC-06 7 120906284 120906284 C T CPED1 Silent p.L772L 0.43 TCGA-D3-A2JC-06 7 122635418 122635418 G T TAS2R16 Missense_Mutation p.L91I 0.47 deleterious(0.04) possibly_damaging(0.654) TCGA-D3-A2JC-06 7 122774551 122774551 C T SLC13A1 Missense_Mutation p.G282E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 7 123594244 123594244 G A SPAM1 Missense_Mutation p.G207E 0.35 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JC-06 7 131864632 131864632 G A PLXNA4 Missense_Mutation p.P1230S 0.50 tolerated(1) benign(0.003) TCGA-D3-A2JC-06 7 134653111 134653111 G A CALD1 3'UTR 0.31 TCGA-D3-A2JC-06 7 142749899 142749899 G A OR6V1 Missense_Mutation p.M154I 0.36 tolerated(1) benign(0.235) TCGA-D3-A2JC-06 7 20434519 20434519 G A ITGB8 Missense_Mutation p.D353N 0.52 tolerated(0.39) possibly_damaging(0.72) TCGA-D3-A2JC-06 7 2954975 2954975 C T CARD11 Missense_Mutation p.R912Q 0.55 deleterious(0.02) possibly_damaging(0.804) TCGA-D3-A2JC-06 7 37780115 37780115 C T GPR141 Silent p.F40F 0.33 TCGA-D3-A2JC-06 7 51096770 51096770 C T COBL Missense_Mutation p.D675N 0.28 tolerated(0.29) benign(0.038) TCGA-D3-A2JC-06 7 54612388 54612388 G A VSTM2A Silent p.Q51Q 0.33 TCGA-D3-A2JC-06 7 73449730 73449730 G A ELN Missense_Mutation p.G40E 0.29 unknown(0) TCGA-D3-A2JC-06 7 87160746 87160746 G A ABCB1 Missense_Mutation p.S850F 0.31 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JC-06 7 99799776 99799776 C T GATS 3'UTR 0.26 TCGA-D3-A2JC-06 8 101629886 101629886 C T SNX31 Missense_Mutation p.E132K 0.38 tolerated(0.23) benign(0.014) TCGA-D3-A2JC-06 8 105001569 105001569 T G RIMS2 Silent p.T988T 0.21 TCGA-D3-A2JC-06 8 119391765 119391765 C T SAMD12 Missense_Mutation p.G166E 0.52 deleterious_low_confidence(0.04) benign(0.106) TCGA-D3-A2JC-06 8 119391766 119391766 C T SAMD12 Missense_Mutation p.G166R 0.52 tolerated_low_confidence(0.22) benign(0.003) TCGA-D3-A2JC-06 8 124268124 124268124 G A ZHX1 Silent p.D21D 0.32 TCGA-D3-A2JC-06 8 143570442 143570442 G A BAI1 Silent p.R833R 0.31 TCGA-D3-A2JC-06 8 143784832 143784832 C T LY6K 3'UTR 0.38 TCGA-D3-A2JC-06 8 143922535 143922535 G A GML Nonsense_Mutation p.W25* 0.43 TCGA-D3-A2JC-06 8 18258111 18258111 G A NAT2 Missense_Mutation p.E200K 0.39 tolerated(0.1) benign(0.211) TCGA-D3-A2JC-06 8 35425666 35425666 G A UNC5D Missense_Mutation p.D125N 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JC-06 8 3889468 3889468 C T CSMD1 Missense_Mutation p.G190E 0.28 probably_damaging(1) TCGA-D3-A2JC-06 8 56698986 56698986 A G TGS1 Missense_Mutation p.T177A 0.31 tolerated(0.89) benign(0.001) TCGA-D3-A2JC-06 8 56912056 56912056 C T LYN Silent p.S428S 0.35 TCGA-D3-A2JC-06 8 89180031 89180031 G A MMP16 Silent p.F192F 0.27 TCGA-D3-A2JC-06 8 91029411 91029411 C T DECR1 Silent p.F43F 0.27 TCGA-D3-A2JC-06 8 91937813 91937813 G A NECAB1 Missense_Mutation p.R182Q 0.33 deleterious(0.01) possibly_damaging(0.478) TCGA-D3-A2JC-06 8 95272502 95272502 C T GEM Missense_Mutation p.R77Q 0.33 deleterious(0) probably_damaging(0.962) TCGA-D3-A2JC-06 9 103014720 103014720 G A INVS Missense_Mutation p.G412S 0.38 deleterious(0.02) benign(0.219) TCGA-D3-A2JC-06 9 104187759 104187759 G A ALDOB Missense_Mutation p.R259C 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A2JC-06 9 105767454 105767454 G A CYLC2 Missense_Mutation p.E181K 0.29 deleterious(0.01) unknown(0) TCGA-D3-A2JC-06 9 120476607 120476607 T C TLR4 Missense_Mutation p.I734T 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 9 130489630 130489630 G A TTC16 Silent p.A550A 0.32 TCGA-D3-A2JC-06 9 137623932 137623932 G A COL5A1 Missense_Mutation p.G450S 0.16 probably_damaging(0.999) TCGA-D3-A2JC-06 9 137623933 137623933 G A COL5A1 Missense_Mutation p.G450D 0.16 probably_damaging(1) TCGA-D3-A2JC-06 9 35674227 35674227 G A CA9 Missense_Mutation p.G91R 0.56 tolerated_low_confidence(0.29) probably_damaging(0.953) TCGA-D3-A2JC-06 9 35674228 35674228 G A CA9 Missense_Mutation p.G91E 0.56 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-D3-A2JC-06 9 35751265 35751265 C T RGP1 Missense_Mutation p.L164F 0.10 deleterious(0.04) benign(0.156) TCGA-D3-A2JC-06 9 36356326 36356326 G A RNF38 Missense_Mutation p.P295S 0.16 tolerated(0.19) benign(0.074) TCGA-D3-A2JC-06 X 100603742 100603742 G A TIMM8A 5'UTR 0.75 TCGA-D3-A2JC-06 X 109931894 109931894 G A CHRDL1 Nonsense_Mutation p.R306* 0.46 TCGA-D3-A2JC-06 X 142795561 142795561 C T SPANXN2 Silent p.Q39Q 0.24 TCGA-D3-A2JC-06 X 145082635 145082635 T C MIR891B RNA 0.42 TCGA-D3-A2JC-06 X 150889962 150889962 C T FATE1 Silent p.F110F 0.43 TCGA-D3-A2JC-06 X 150912081 150912081 G A CNGA2 Missense_Mutation p.G369E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A2JC-06 X 153760419 153760419 G A G6PD Missense_Mutation p.P511S 0.50 tolerated(0.11) benign(0.01) TCGA-D3-A2JC-06 X 15554480 15554480 G A BMX Missense_Mutation p.M384I 0.30 tolerated(0.13) benign(0.002) TCGA-D3-A2JC-06 X 18646512 18646512 C T CDKL5 Missense_Mutation p.R840C 0.33 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-D3-A2JC-06 X 19854289 19854289 C T SH3KBP1 Missense_Mutation p.G39E 0.41 deleterious(0) benign(0.031) TCGA-D3-A2JC-06 X 26212241 26212241 G T MAGEB6 Missense_Mutation p.S93I 0.28 tolerated(0.08) possibly_damaging(0.799) TCGA-D3-A2JC-06 X 49854958 49854958 G A CLCN5 Missense_Mutation p.E644K 0.22 deleterious(0.01) possibly_damaging(0.7) TCGA-D3-A2JC-06 X 50658933 50658933 G A BMP15 Missense_Mutation p.G169R 0.32 tolerated(0.81) benign(0.001) TCGA-D3-A2JC-06 X 53592178 53592178 T C HUWE1 Missense_Mutation p.N2244D 0.35 probably_damaging(0.993) TCGA-D3-A2JC-06 X 54569418 54569418 C T GNL3L Missense_Mutation p.P113S 0.14 tolerated(0.55) probably_damaging(0.998) TCGA-D3-A2JC-06 X 72434322 72434322 C T NAP1L2 Missense_Mutation p.E3K 0.29 tolerated_low_confidence(0.15) benign(0.019) TCGA-D3-A2JC-06 X 83320109 83320109 G A RPS6KA6 Missense_Mutation p.S661F 0.29 deleterious(0.02) probably_damaging(0.93) TCGA-D3-A2JC-06 X 84510572 84510572 C T ZNF711 Silent p.F129F 0.36 TCGA-D3-A2JD-06 10 101646230 101646230 C T DNMBP Missense_Mutation p.E1149K 0.12 deleterious(0) probably_damaging(0.955) TCGA-D3-A2JD-06 10 101646231 101646231 C T DNMBP Silent p.E1148E 0.12 TCGA-D3-A2JD-06 10 115335690 115335690 G A HABP2 Silent p.G86G 0.19 TCGA-D3-A2JD-06 10 116045915 116045915 C T VWA2 Silent p.D405D 0.22 TCGA-D3-A2JD-06 10 134016294 134016294 G A DPYSL4 Missense_Mutation p.D476N 0.15 deleterious(0.05) probably_damaging(0.963) TCGA-D3-A2JD-06 10 134898381 134898381 C T GPR123 5'Flank 0.14 TCGA-D3-A2JD-06 10 135053799 135053799 G A VENTX Missense_Mutation p.D256N 0.21 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-D3-A2JD-06 10 30336468 30336468 C T KIAA1462 Missense_Mutation p.E92K 0.20 tolerated(0.07) possibly_damaging(0.732) TCGA-D3-A2JD-06 10 31799743 31799743 C T ZEB1 Silent p.T209T 0.17 TCGA-D3-A2JD-06 10 50854660 50854660 C T CHAT Silent p.L407L 0.18 TCGA-D3-A2JD-06 10 50959916 50959916 C T OGDHL Missense_Mutation p.E236K 0.15 tolerated(0.07) benign(0.005) TCGA-D3-A2JD-06 10 55590913 55590913 C T PCDH15 Intron 0.20 TCGA-D3-A2JD-06 10 63170422 63170422 C T TMEM26 Nonsense_Mutation p.W255* 0.23 TCGA-D3-A2JD-06 10 81056470 81056470 C T ZMIZ1 Intron 0.24 TCGA-D3-A2JD-06 10 81060555 81060555 C T ZMIZ1 Silent p.P625P 0.18 TCGA-D3-A2JD-06 10 87614336 87614336 G A GRID1 Missense_Mutation p.R384W 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A2JD-06 10 95380650 95380650 C T PDE6C Silent p.V212V 0.11 TCGA-D3-A2JD-06 10 95849071 95849071 G A PLCE1 Intron 0.16 TCGA-D3-A2JD-06 10 96447594 96447594 G A CYP2C18 Missense_Mutation p.G79E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 11 10783502 10783502 C T CTR9 Silent p.S250S 0.30 TCGA-D3-A2JD-06 11 108562663 108562663 C T DDX10 Missense_Mutation p.H346Y 0.33 tolerated(0.64) possibly_damaging(0.597) TCGA-D3-A2JD-06 11 1095748 1095748 G A MUC2 Missense_Mutation p.E2087K 0.38 unknown(0) TCGA-D3-A2JD-06 11 117391953 117391953 C T DSCAML1 Missense_Mutation p.E429K 0.39 tolerated(0.07) possibly_damaging(0.832) TCGA-D3-A2JD-06 11 118983487 118983487 C A C2CD2L Silent p.T430T 0.11 TCGA-D3-A2JD-06 11 124545172 124545172 A G SPA17 Silent p.P4P 0.37 TCGA-D3-A2JD-06 11 124740156 124740156 C T ROBO3 Missense_Mutation p.R288C 0.33 deleterious(0.01) possibly_damaging(0.806) TCGA-D3-A2JD-06 11 133791039 133791039 C T IGSF9B Missense_Mutation p.D861N 0.35 deleterious(0.01) possibly_damaging(0.674) TCGA-D3-A2JD-06 11 33065476 33065476 C T TCP11L1 Missense_Mutation p.P53S 0.29 deleterious(0.04) benign(0.232) TCGA-D3-A2JD-06 11 34502425 34502425 C T ELF5 Missense_Mutation p.E199K 0.20 tolerated(0.55) benign(0.074) TCGA-D3-A2JD-06 11 35287299 35287299 C T SLC1A2 Silent p.R476R 0.40 TCGA-D3-A2JD-06 11 36424900 36424900 G A PRR5L Missense_Mutation p.E73K 0.32 deleterious(0.03) probably_damaging(0.962) TCGA-D3-A2JD-06 11 45267949 45267949 C T SYT13 Missense_Mutation p.E321K 0.42 tolerated(0.11) benign(0.142) TCGA-D3-A2JD-06 11 47399874 47399874 G A SPI1 Missense_Mutation p.P11S 0.33 tolerated(0.74) benign(0.009) TCGA-D3-A2JD-06 11 55927077 55927077 G A OR8K5 Silent p.S239S 0.33 TCGA-D3-A2JD-06 11 58916326 58916326 C T FAM111A 5'UTR 0.21 TCGA-D3-A2JD-06 11 59224633 59224633 C T OR4D6 Missense_Mutation p.S67L 0.38 deleterious(0) possibly_damaging(0.521) TCGA-D3-A2JD-06 11 6023653 6023653 G A OR56A4 Silent p.L242L 0.53 TCGA-D3-A2JD-06 11 63064784 63064784 A C SLC22A10 Silent p.R172R 0.31 TCGA-D3-A2JD-06 11 63365622 63365622 G A PLA2G16 Missense_Mutation p.P10L 0.50 tolerated(0.6) benign(0.037) TCGA-D3-A2JD-06 11 64519968 64519968 C T PYGM Silent p.G509G 0.35 TCGA-D3-A2JD-06 11 66249829 66249829 C T DPP3 Missense_Mutation p.S53F 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 11 67430814 67430814 G A ALDH3B2 Missense_Mutation p.H344Y 0.32 tolerated(0.25) benign(0.082) TCGA-D3-A2JD-06 11 70505998 70505998 C T SHANK2 Missense_Mutation p.E667K 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JD-06 11 77589978 77589978 G A INTS4 3'UTR 0.42 TCGA-D3-A2JD-06 11 92715239 92715239 C T MTNR1B Nonsense_Mutation p.Q284* 0.36 TCGA-D3-A2JD-06 11 99690287 99690287 C T CNTN5 Missense_Mutation p.S23F 0.12 deleterious_low_confidence(0) benign(0.024) TCGA-D3-A2JD-06 12 100656056 100656056 C T DEPDC4 Missense_Mutation p.R229Q 0.16 tolerated(0.33) benign(0) TCGA-D3-A2JD-06 12 10772677 10772677 C T STYK1 3'UTR 0.41 TCGA-D3-A2JD-06 12 109629448 109629448 C T ACACB Silent p.S725S 0.18 TCGA-D3-A2JD-06 12 117768790 117768790 C T NOS1 Missense_Mutation p.G29R 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2JD-06 12 124350537 124350537 C T DNAH10 Nonsense_Mutation p.R2244* 0.16 TCGA-D3-A2JD-06 12 132624716 132624716 C T DDX51 Missense_Mutation p.G568S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 12 1994178 1994178 C T CACNA2D4 Missense_Mutation p.R378K 0.14 tolerated(0.86) benign(0.002) TCGA-D3-A2JD-06 12 32491879 32491879 C T BICD1 Silent p.L910L 0.10 TCGA-D3-A2JD-06 12 47172358 47172358 G A SLC38A4 Missense_Mutation p.H307Y 0.38 tolerated(0.62) benign(0.004) TCGA-D3-A2JD-06 12 47471823 47471823 G A AMIGO2 Silent p.F321F 0.15 TCGA-D3-A2JD-06 12 51586221 51586221 G A POU6F1 Nonsense_Mutation p.Q95* 0.12 TCGA-D3-A2JD-06 12 51586222 51586222 G A POU6F1 Silent p.P94P 0.11 TCGA-D3-A2JD-06 12 52913666 52913666 C T KRT5 Missense_Mutation p.G139S 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JD-06 12 53683916 53683916 G A ESPL1 Missense_Mutation p.V1721M 0.21 tolerated(0.2) benign(0.065) TCGA-D3-A2JD-06 12 57113173 57113173 G A NACA Intron 0.30 TCGA-D3-A2JD-06 12 57422533 57422533 C T MYO1A 3'UTR 0.16 TCGA-D3-A2JD-06 12 57913004 57913004 G A DDIT3 Intron 0.10 TCGA-D3-A2JD-06 12 70049108 70049108 G A BEST3 Missense_Mutation p.S529F 0.21 tolerated_low_confidence(0.71) benign(0.001) TCGA-D3-A2JD-06 12 7048061 7048061 C T ATN1 Silent p.L979L 0.14 TCGA-D3-A2JD-06 12 72091168 72091168 C T TMEM19 Missense_Mutation p.S164F 0.29 deleterious(0.02) benign(0.164) TCGA-D3-A2JD-06 12 73012805 73012805 A G TRHDE Missense_Mutation p.Y774C 0.30 deleterious(0) possibly_damaging(0.9) TCGA-D3-A2JD-06 12 78531100 78531100 C T NAV3 Missense_Mutation p.R1529C 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 12 7894077 7894077 G A CLEC4C Nonsense_Mutation p.R59* 0.20 TCGA-D3-A2JD-06 12 80750683 80750683 C T OTOGL Missense_Mutation p.S1994F 0.31 deleterious(0.02) benign(0.258) TCGA-D3-A2JD-06 12 81112667 81112667 C T MYF5 Missense_Mutation p.S202F 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 12 8612252 8612252 C T CLEC6A Missense_Mutation p.H61Y 0.27 tolerated(0.17) benign(0.004) TCGA-D3-A2JD-06 12 86373960 86373960 G A MGAT4C Silent p.L182L 0.23 TCGA-D3-A2JD-06 12 96387588 96387588 C T HAL Silent p.G171G 0.12 TCGA-D3-A2JD-06 13 101763483 101763483 C T NALCN Missense_Mutation p.E763K 0.20 tolerated(0.65) benign(0.122) TCGA-D3-A2JD-06 13 113803660 113803660 C T F10 Silent p.F432F 0.11 TCGA-D3-A2JD-06 13 25029201 25029201 G A PARP4 Silent p.S904S 0.13 TCGA-D3-A2JD-06 13 25029202 25029202 G A PARP4 Missense_Mutation p.S904F 0.13 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JD-06 13 27241676 27241676 G A WASF3 Missense_Mutation p.M97I 0.11 deleterious(0.03) benign(0.156) TCGA-D3-A2JD-06 13 29600487 29600487 C T MTUS2 Missense_Mutation p.P561L 0.16 deleterious(0) benign(0.382) TCGA-D3-A2JD-06 13 33635042 33635042 C T KL Missense_Mutation p.S609F 0.09 deleterious(0) probably_damaging(0.972) TCGA-D3-A2JD-06 13 33681026 33681026 G A STARD13 Silent p.S1031S 0.10 TCGA-D3-A2JD-06 13 52539038 52539038 G A ATP7B Silent p.I613I 0.18 TCGA-D3-A2JD-06 13 70371056 70371056 G A KLHL1 Silent p.L485L 0.14 TCGA-D3-A2JD-06 13 80911809 80911809 G A SPRY2 Missense_Mutation p.S11L 0.22 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JD-06 13 84455097 84455097 G A SLITRK1 Silent p.L182L 0.32 TCGA-D3-A2JD-06 13 88327745 88327745 C T SLITRK5 Silent p.V34V 0.19 TCGA-D3-A2JD-06 13 97485020 97485020 G A HS6ST3 Missense_Mutation p.M328I 0.17 tolerated(0.28) benign(0.065) TCGA-D3-A2JD-06 14 101493169 101493169 G A MIR329-1 RNA 0.15 TCGA-D3-A2JD-06 14 102661347 102661347 C T WDR20 Missense_Mutation p.H108Y 0.10 deleterious(0.01) benign(0.007) TCGA-D3-A2JD-06 14 103369643 103369643 C T TRAF3 Missense_Mutation p.R338W 0.20 deleterious(0) benign(0.339) TCGA-D3-A2JD-06 14 103958222 103958222 C T MARK3 Silent p.F565F 0.33 TCGA-D3-A2JD-06 14 105415711 105415711 G A AHNAK2 Missense_Mutation p.S2026F 0.18 probably_damaging(0.996) TCGA-D3-A2JD-06 14 105814892 105814892 C T PACS2 Missense_Mutation p.S61F 0.10 deleterious(0.01) possibly_damaging(0.904) TCGA-D3-A2JD-06 14 106405688 106405688 C T IGHV6-1 Missense_Mutation p.D96N 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-D3-A2JD-06 14 24036410 24036410 G A AP1G2 Silent p.S38S 0.13 TCGA-D3-A2JD-06 14 24588419 24588419 G C DCAF11 Missense_Mutation p.G282A 0.15 tolerated(0.41) benign(0.241) TCGA-D3-A2JD-06 14 50472359 50472359 G A C14orf182 Silent p.F53F 0.11 TCGA-D3-A2JD-06 14 64587649 64587649 C T SYNE2 Missense_Mutation p.P4343L 0.12 benign(0.009) TCGA-D3-A2JD-06 14 68250149 68250149 G A ZFYVE26 Silent p.S1240S 0.16 TCGA-D3-A2JD-06 14 74206073 74206073 G A ELMSAN1 Silent p.P213P 0.10 TCGA-D3-A2JD-06 14 74206074 74206074 G A ELMSAN1 Missense_Mutation p.P213L 0.10 deleterious(0.05) probably_damaging(0.981) TCGA-D3-A2JD-06 14 74711925 74711925 C T VSX2 Silent p.H171H 0.16 TCGA-D3-A2JD-06 14 77732568 77732568 C T NGB 3'UTR 0.20 TCGA-D3-A2JD-06 14 77987828 77987828 G A SPTLC2 Missense_Mutation p.P467L 0.22 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JD-06 14 77987829 77987829 G A SPTLC2 Missense_Mutation p.P467S 0.22 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JD-06 15 100821446 100821446 G A ADAMTS17 Silent p.T259T 0.08 TCGA-D3-A2JD-06 15 22473085 22473085 C T IGHV4OR15-8 Silent p.G62G 0.05 TCGA-D3-A2JD-06 15 22706099 22706099 C T AC116165.1 5'Flank 0.20 TCGA-D3-A2JD-06 15 25227064 25227064 T G SNRPN 3'Flank 0.12 TCGA-D3-A2JD-06 15 25344676 25344676 C T SNORD116-26 RNA 0.10 TCGA-D3-A2JD-06 15 40675118 40675118 C T KNSTRN Missense_Mutation p.P28S 0.10 tolerated_low_confidence(0.09) benign(0.031) TCGA-D3-A2JD-06 15 40675119 40675119 C T KNSTRN Missense_Mutation p.P28L 0.11 deleterious_low_confidence(0.03) benign(0.046) TCGA-D3-A2JD-06 15 40949309 40949309 C T CASC5 Missense_Mutation p.S2211F 0.15 tolerated(0.59) benign(0.056) TCGA-D3-A2JD-06 15 43813623 43813623 C T MAP1A 5'UTR 0.15 TCGA-D3-A2JD-06 15 43819178 43819178 C T MAP1A Missense_Mutation p.P1836L 0.10 possibly_damaging(0.736) TCGA-D3-A2JD-06 15 45387154 45387154 C T DUOX2 Missense_Mutation p.D1459N 0.10 deleterious(0) possibly_damaging(0.752) TCGA-D3-A2JD-06 15 48500269 48500269 C T SLC12A1 Missense_Mutation p.T118I 0.11 tolerated(0.27) possibly_damaging(0.704) TCGA-D3-A2JD-06 15 50519357 50519357 G A SLC27A2 Missense_Mutation p.R480K 0.09 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JD-06 15 54305995 54305995 C T UNC13C Missense_Mutation p.R299W 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JD-06 15 55657426 55657426 G A CCPG1 Missense_Mutation p.S263F 0.10 tolerated(0.7) benign(0.012) TCGA-D3-A2JD-06 15 59910437 59910437 G A GCNT3 5'UTR 0.15 TCGA-D3-A2JD-06 15 65226364 65226364 C T ANKDD1A Missense_Mutation p.A266V 0.14 tolerated(0.12) benign(0.248) TCGA-D3-A2JD-06 15 65226365 65226365 C T ANKDD1A Silent p.A266A 0.14 TCGA-D3-A2JD-06 15 66615079 66615079 G A DIS3L Missense_Mutation p.E461K 0.11 deleterious(0) possibly_damaging(0.847) TCGA-D3-A2JD-06 15 68123199 68123199 G A SKOR1 Silent p.V756V 0.11 TCGA-D3-A2JD-06 15 69335039 69335039 G A NOX5 Nonsense_Mutation p.W514* 0.24 TCGA-D3-A2JD-06 15 69335040 69335040 G A NOX5 Nonsense_Mutation p.W514* 0.23 TCGA-D3-A2JD-06 15 74472546 74472546 C T STRA6 Missense_Mutation p.G666R 0.15 tolerated(0.57) benign(0.013) TCGA-D3-A2JD-06 15 74654333 74654333 G A CYP11A1 Intron 0.11 TCGA-D3-A2JD-06 15 85461754 85461754 G A SLC28A1 Splice_Site p.X266_splice 0.13 TCGA-D3-A2JD-06 15 90023616 90023616 C T RHCG Missense_Mutation p.M182I 0.09 tolerated(0.14) benign(0.06) TCGA-D3-A2JD-06 15 90276242 90276242 C T WDR93 Missense_Mutation p.P446S 0.09 tolerated(0.18) benign(0.076) TCGA-D3-A2JD-06 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.14 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-D3-A2JD-06 16 15702291 15702291 G A KIAA0430 Missense_Mutation p.L1347F 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 16 15815452 15815452 C T MYH11 Missense_Mutation p.D1476N 0.11 possibly_damaging(0.572) TCGA-D3-A2JD-06 16 1748899 1748899 C T HN1L Missense_Mutation p.P158L 0.19 deleterious(0.03) benign(0.057) TCGA-D3-A2JD-06 16 1836596 1836596 C T NUBP2 Silent p.G25G 0.13 TCGA-D3-A2JD-06 16 19051753 19051753 G A TMC7 Missense_Mutation p.R441H 0.26 deleterious(0.03) possibly_damaging(0.77) TCGA-D3-A2JD-06 16 21728346 21728346 A T OTOA Missense_Mutation p.D536V 0.12 deleterious(0.04) benign(0.169) TCGA-D3-A2JD-06 16 27499675 27499675 C T GTF3C1 Nonsense_Mutation p.W1191* 0.15 TCGA-D3-A2JD-06 16 28117463 28117463 G A XPO6 Silent p.I895I 0.31 TCGA-D3-A2JD-06 16 31004130 31004130 G A STX1B 3'UTR 0.22 TCGA-D3-A2JD-06 16 54967726 54967726 C T IRX5 Nonsense_Mutation p.Q465* 0.31 TCGA-D3-A2JD-06 16 57764843 57764843 G A CCDC135 Missense_Mutation p.E798K 0.08 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JD-06 16 70989289 70989289 C T HYDIN Missense_Mutation p.G2102E 0.25 benign(0.012) TCGA-D3-A2JD-06 17 10293814 10293814 C T MYH8 Missense_Mutation p.R1924Q 0.14 deleterious(0) probably_damaging(0.957) TCGA-D3-A2JD-06 17 10299683 10299683 C T MYH8 Silent p.E1539E 0.20 TCGA-D3-A2JD-06 17 10360795 10360795 C T MYH4 Silent p.Q613Q 0.25 TCGA-D3-A2JD-06 17 10551931 10551931 G A MYH3 Silent p.P226P 0.21 TCGA-D3-A2JD-06 17 1538734 1538734 C T SCARF1 Missense_Mutation p.R604Q 0.17 tolerated(0.21) benign(0.048) TCGA-D3-A2JD-06 17 16734769 16734769 C T KRT16P2 RNA 0.13 TCGA-D3-A2JD-06 17 18673257 18673257 C T FBXW10 Missense_Mutation p.S622F 0.17 deleterious(0.04) benign(0.008) TCGA-D3-A2JD-06 17 18682444 18682444 G A FBXW10 Missense_Mutation p.E998K 0.17 deleterious(0.01) possibly_damaging(0.698) TCGA-D3-A2JD-06 17 33772553 33772553 G C SLFN13 Silent p.A49A 0.17 TCGA-D3-A2JD-06 17 39646023 39646023 G A KRT36 Missense_Mutation p.R32C 0.14 tolerated(0.21) possibly_damaging(0.609) TCGA-D3-A2JD-06 17 42477247 42477247 G A GPATCH8 Missense_Mutation p.P733L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.57) TCGA-D3-A2JD-06 17 42992741 42992741 G A GFAP Silent p.S38S 0.49 TCGA-D3-A2JD-06 17 44108899 44108899 G A KANSL1 Silent p.P1087P 0.09 TCGA-D3-A2JD-06 17 45892594 45892594 G A OSBPL7 Missense_Mutation p.S415F 0.11 deleterious(0.01) possibly_damaging(0.748) TCGA-D3-A2JD-06 17 47123702 47123702 C T IGF2BP1 Silent p.I536I 0.11 TCGA-D3-A2JD-06 17 48185985 48185985 C T PDK2 Nonsense_Mutation p.R291* 0.67 TCGA-D3-A2JD-06 17 61988059 61988059 C T CSHL1 Intron 0.10 TCGA-D3-A2JD-06 17 61988101 61988101 G A CSHL1 Intron 0.12 TCGA-D3-A2JD-06 17 62892102 62892102 G T LRRC37A3 Missense_Mutation p.P425H 0.11 deleterious(0.04) probably_damaging(0.921) TCGA-D3-A2JD-06 17 65174871 65174871 G A HELZ Missense_Mutation p.S445F 0.35 deleterious(0) possibly_damaging(0.776) TCGA-D3-A2JD-06 17 67302982 67302982 G A ABCA5 Silent p.Y224Y 0.44 TCGA-D3-A2JD-06 17 71281609 71281609 G A CDC42EP4 Missense_Mutation p.S344F 0.10 deleterious(0) benign(0.009) TCGA-D3-A2JD-06 17 73898149 73898149 C T MRPL38 Missense_Mutation p.E112K 0.65 tolerated(0.21) benign(0.008) TCGA-D3-A2JD-06 17 7608943 7608943 G A EFNB3 Silent p.G9G 0.41 TCGA-D3-A2JD-06 17 76471509 76471509 G A DNAH17 Missense_Mutation p.R2774C 0.54 probably_damaging(1) TCGA-D3-A2JD-06 17 77755738 77755738 G A CBX2 Intron 0.09 TCGA-D3-A2JD-06 17 77755739 77755739 G A CBX2 Intron 0.09 TCGA-D3-A2JD-06 17 78022387 78022387 C T CCDC40 Missense_Mutation p.P228S 0.57 tolerated(0.14) benign(0.052) TCGA-D3-A2JD-06 17 80196792 80196792 C T SLC16A3 Silent p.F446F 0.45 TCGA-D3-A2JD-06 17 8224363 8224363 G A ARHGEF15 3'UTR 0.19 TCGA-D3-A2JD-06 18 13826735 13826735 G A MC5R Missense_Mutation p.R324K 0.13 tolerated_low_confidence(0.66) probably_damaging(0.931) TCGA-D3-A2JD-06 18 13826736 13826736 G A MC5R Silent p.R324R 0.14 TCGA-D3-A2JD-06 18 47516876 47516876 C T MYO5B Silent p.R257R 0.25 TCGA-D3-A2JD-06 18 65181271 65181271 C T DSEL Missense_Mutation p.R202Q 0.15 tolerated(0.25) probably_damaging(0.978) TCGA-D3-A2JD-06 18 672884 672884 C G TYMS Missense_Mutation p.P277A 0.10 deleterious(0) probably_damaging(0.942) TCGA-D3-A2JD-06 18 672885 672885 C T TYMS Missense_Mutation p.P277L 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JD-06 18 72998840 72998840 C T TSHZ1 Missense_Mutation p.S448F 0.25 deleterious(0.03) benign(0.125) TCGA-D3-A2JD-06 18 74667977 74667977 C A ZNF236 Missense_Mutation p.Q1649K 0.16 tolerated(0.48) benign(0.007) TCGA-D3-A2JD-06 18 9887203 9887203 C T TXNDC2 Missense_Mutation p.P243S 0.16 tolerated(1) benign(0.028) TCGA-D3-A2JD-06 19 13041110 13041110 G A FARSA Missense_Mutation p.R144W 0.17 deleterious(0) benign(0.259) TCGA-D3-A2JD-06 19 1468588 1468588 G A APC2 Missense_Mutation p.G1763E 0.33 benign(0.035) TCGA-D3-A2JD-06 19 15197931 15197931 G A OR1I1 Missense_Mutation p.E19K 0.16 tolerated(0.06) benign(0.113) TCGA-D3-A2JD-06 19 17922825 17922825 G A B3GNT3 Missense_Mutation p.R338Q 0.19 tolerated(0.07) benign(0.164) TCGA-D3-A2JD-06 19 18497249 18497249 C T GDF15 Missense_Mutation p.P84S 0.15 tolerated(0.42) benign(0.018) TCGA-D3-A2JD-06 19 19627027 19627027 G A NDUFA13 5'UTR 0.15 TCGA-D3-A2JD-06 19 19654772 19654772 G A CILP2 Missense_Mutation p.G473E 0.13 tolerated(1) possibly_damaging(0.478) TCGA-D3-A2JD-06 19 2832352 2832352 C T ZNF554 Missense_Mutation p.S102F 0.16 deleterious(0.03) benign(0.023) TCGA-D3-A2JD-06 19 36036708 36036708 T G TMEM147 Missense_Mutation p.C23G 0.23 tolerated(0.24) benign(0.011) TCGA-D3-A2JD-06 19 36884606 36884606 G A ZFP82 Silent p.H212H 0.15 TCGA-D3-A2JD-06 19 41512885 41512885 G A CYP2B6 Missense_Mutation p.R187Q 0.20 deleterious(0.01) possibly_damaging(0.888) TCGA-D3-A2JD-06 19 43421976 43421976 G C PSG6 5'UTR 0.21 TCGA-D3-A2JD-06 19 43920687 43920687 G T TEX101 Missense_Mutation p.W142L 0.15 tolerated(0.25) benign(0.103) TCGA-D3-A2JD-06 19 45028023 45028023 C T CEACAM20 RNA 0.11 TCGA-D3-A2JD-06 19 48378071 48378071 C T SULT2A1 Silent p.E196E 0.18 TCGA-D3-A2JD-06 19 49243482 49243482 G A RASIP1 Missense_Mutation p.P20S 0.18 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JD-06 19 49261334 49261334 C T FGF21 Missense_Mutation p.R163C 0.11 deleterious(0) possibly_damaging(0.852) TCGA-D3-A2JD-06 19 50380945 50380945 G A AKT1S1 5'UTR 0.26 TCGA-D3-A2JD-06 19 50906833 50906833 C T POLD1 Silent p.I407I 0.30 TCGA-D3-A2JD-06 19 5238961 5238961 G A PTPRS Silent p.T606T 0.25 TCGA-D3-A2JD-06 19 52857508 52857508 C T ZNF610 Silent p.I65I 0.09 TCGA-D3-A2JD-06 19 53740999 53740999 G A ZNF677 Silent p.V327V 0.14 TCGA-D3-A2JD-06 19 54080376 54080376 G A ZNF331 Missense_Mutation p.E188K 0.12 tolerated(0.28) probably_damaging(0.995) TCGA-D3-A2JD-06 19 55494629 55494629 G A NLRP2 Silent p.E521E 0.14 TCGA-D3-A2JD-06 19 56459545 56459545 C T NLRP8 Missense_Mutation p.P93S 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JD-06 19 56487605 56487605 G A NLRP8 Missense_Mutation p.D938N 0.20 tolerated(0.13) possibly_damaging(0.498) TCGA-D3-A2JD-06 19 57327719 57327719 G A PEG3 Silent p.S697S 0.15 TCGA-D3-A2JD-06 19 58117970 58117970 C T ZNF530 Silent p.S359S 0.14 TCGA-D3-A2JD-06 19 58946494 58946494 G T ZNF132 Missense_Mutation p.A106E 0.14 tolerated(0.34) benign(0.203) TCGA-D3-A2JD-06 19 603747 603747 C T HCN2 Missense_Mutation p.P279L 0.22 deleterious(0) possibly_damaging(0.513) TCGA-D3-A2JD-06 19 6418740 6418740 C T KHSRP Silent p.K251K 0.11 TCGA-D3-A2JD-06 19 8153023 8153023 C T FBN3 Silent p.G2139G 0.18 TCGA-D3-A2JD-06 19 9060133 9060133 C T MUC16 Missense_Mutation p.G9105R 0.39 unknown(0) TCGA-D3-A2JD-06 19 9062451 9062451 C T MUC16 Missense_Mutation p.R8332K 0.23 unknown(0) TCGA-D3-A2JD-06 19 9068756 9068756 T A MUC16 Silent p.T6230T 0.14 TCGA-D3-A2JD-06 19 9406606 9406606 C T ZNF699 Missense_Mutation p.E492K 0.12 tolerated(0.87) benign(0.327) TCGA-D3-A2JD-06 19 9578369 9578369 G A ZNF560 Silent p.G418G 0.31 TCGA-D3-A2JD-06 1 103428302 103428302 C T COL11A1 Silent p.E977E 0.30 TCGA-D3-A2JD-06 1 104115776 104115776 C T AMY2B Missense_Mutation p.P136L 0.29 tolerated(0.06) benign(0.125) TCGA-D3-A2JD-06 1 113238833 113238833 G A MOV10 Missense_Mutation p.E615K 0.50 tolerated(0.86) benign(0.009) TCGA-D3-A2JD-06 1 11580841 11580841 C T PTCHD2 Silent p.I766I 0.16 TCGA-D3-A2JD-06 1 117307203 117307203 G A CD2 Silent p.R237R 0.29 TCGA-D3-A2JD-06 1 12835175 12835175 G A PRAMEF12 Missense_Mutation p.M55I 0.11 deleterious(0.03) possibly_damaging(0.584) TCGA-D3-A2JD-06 1 12885041 12885041 T C PRAMEF11 Missense_Mutation p.N357S 0.36 tolerated(0.72) benign(0.023) TCGA-D3-A2JD-06 1 12888368 12888368 C T PRAMEF11 Silent p.G52G 0.11 TCGA-D3-A2JD-06 1 13036300 13036300 G A PRAMEF22 Silent p.L124L 0.18 TCGA-D3-A2JD-06 1 146639510 146639510 G A PRKAB2 Silent p.L53L 0.20 TCGA-D3-A2JD-06 1 154744469 154744469 G A KCNN3 Missense_Mutation p.T477I 0.09 tolerated(0.14) benign(0.226) TCGA-D3-A2JD-06 1 154923827 154923827 C T PBXIP1 Missense_Mutation p.G97E 0.47 tolerated(0.25) benign(0.345) TCGA-D3-A2JD-06 1 155026956 155026956 C T ADAM15 Missense_Mutation p.P196S 0.09 tolerated(0.36) benign(0.033) TCGA-D3-A2JD-06 1 155169793 155169793 G A THBS3 Missense_Mutation p.P607L 0.10 deleterious(0) probably_damaging(0.981) TCGA-D3-A2JD-06 1 155171868 155171868 C T THBS3 Intron 0.34 TCGA-D3-A2JD-06 1 157737316 157737316 G A FCRL2 Intron 0.54 TCGA-D3-A2JD-06 1 158615155 158615155 C T SPTA1 Silent p.E1339E 0.20 TCGA-D3-A2JD-06 1 158724725 158724725 C T OR6K6 Silent p.F40F 0.11 TCGA-D3-A2JD-06 1 159778212 159778212 G A FCRL6 Silent p.E99E 0.15 TCGA-D3-A2JD-06 1 159802889 159802889 G A SLAMF8 Silent p.V197V 0.10 TCGA-D3-A2JD-06 1 160275485 160275485 G C COPA Silent p.A507A 0.16 TCGA-D3-A2JD-06 1 160460440 160460440 G A SLAMF6 Silent p.L228L 0.12 TCGA-D3-A2JD-06 1 160719702 160719702 G A SLAMF7 Silent p.G156G 0.11 TCGA-D3-A2JD-06 1 161022462 161022462 G A ARHGAP30 Missense_Mutation p.P264S 0.26 deleterious(0.03) benign(0.423) TCGA-D3-A2JD-06 1 16378904 16378904 C T CLCNKB Silent p.I540I 0.18 TCGA-D3-A2JD-06 1 167096537 167096537 C T DUSP27 Silent p.I723I 0.32 TCGA-D3-A2JD-06 1 169505778 169505778 G A F5 Missense_Mutation p.P1646L 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 1 171154965 171154965 G A FMO2 Missense_Mutation p.G38E 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 1 176734808 176734808 C T PAPPA2 Silent p.I1386I 0.43 TCGA-D3-A2JD-06 1 178490278 178490278 G A TEX35 Intron 0.22 TCGA-D3-A2JD-06 1 181741255 181741255 A C CACNA1E Missense_Mutation p.K1676T 0.13 deleterious(0) possibly_damaging(0.728) TCGA-D3-A2JD-06 1 181765861 181765861 G A CACNA1E Missense_Mutation p.R2089Q 0.37 deleterious(0.02) possibly_damaging(0.614) TCGA-D3-A2JD-06 1 185963949 185963949 C T HMCN1 Missense_Mutation p.P1170S 0.29 benign(0.01) TCGA-D3-A2JD-06 1 190067904 190067904 G A BRINP3 Silent p.I515I 0.33 TCGA-D3-A2JD-06 1 196953100 196953100 C T CFHR5 Missense_Mutation p.S88F 0.29 tolerated(0.29) benign(0) TCGA-D3-A2JD-06 1 201970810 201970810 C T RNPEP Silent p.F447F 0.18 TCGA-D3-A2JD-06 1 203015102 203015102 C T PPFIA4 Missense_Mutation p.S38F 0.16 deleterious(0) probably_damaging(0.956) TCGA-D3-A2JD-06 1 205884064 205884064 G A SLC26A9 Missense_Mutation p.P874S 0.11 tolerated_low_confidence(0.51) unknown(0) TCGA-D3-A2JD-06 1 207751432 207751432 C T CR1 Missense_Mutation p.S1607F 0.20 tolerated(0.4) possibly_damaging(0.662) TCGA-D3-A2JD-06 1 207851566 207851566 G A CR1L Missense_Mutation p.D101N 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A2JD-06 1 210857430 210857430 C T KCNH1 Missense_Mutation p.M721I 0.16 tolerated(0.08) benign(0.028) TCGA-D3-A2JD-06 1 224868708 224868708 C T CNIH3 Nonsense_Mutation p.Q44* 0.18 TCGA-D3-A2JD-06 1 22903359 22903359 G A EPHA8 Missense_Mutation p.R270Q 0.18 tolerated(0.35) benign(0.011) TCGA-D3-A2JD-06 1 234541794 234541794 G A TARBP1 Missense_Mutation p.H1282Y 0.27 deleterious(0.02) probably_damaging(0.92) TCGA-D3-A2JD-06 1 238050772 238050772 A C ZP4 Missense_Mutation p.L215V 0.10 tolerated(0.06) probably_damaging(0.919) TCGA-D3-A2JD-06 1 247241937 247241937 T A ZNF670 5'UTR 0.10 TCGA-D3-A2JD-06 1 247587448 247587448 C T NLRP3 Silent p.L235L 0.14 TCGA-D3-A2JD-06 1 247587649 247587649 G A NLRP3 Missense_Mutation p.D302N 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 1 247695301 247695301 C T OR2C3 Silent p.G171G 0.24 TCGA-D3-A2JD-06 1 248458452 248458452 G T OR2T12 Silent p.T143T 0.24 TCGA-D3-A2JD-06 1 26691131 26691131 G A ZNF683 Silent p.S302S 0.32 TCGA-D3-A2JD-06 1 26881656 26881656 G A RPS6KA1 Silent p.T266T 0.09 TCGA-D3-A2JD-06 1 27088683 27088683 C T ARID1A Silent p.S764S 0.28 TCGA-D3-A2JD-06 1 31897557 31897557 G T SERINC2 Missense_Mutation p.G86W 0.21 deleterious(0.01) probably_damaging(0.941) TCGA-D3-A2JD-06 1 36887763 36887763 G A OSCP1 Silent p.A269A 0.13 TCGA-D3-A2JD-06 1 37270629 37270629 C T GRIK3 Missense_Mutation p.E842K 0.14 deleterious(0) probably_damaging(0.916) TCGA-D3-A2JD-06 1 42049157 42049157 G T HIVEP3 Missense_Mutation p.Q438K 0.17 probably_damaging(0.977) TCGA-D3-A2JD-06 1 42050328 42050328 C T HIVEP3 Silent p.E47E 0.24 TCGA-D3-A2JD-06 1 44085235 44085235 C T PTPRF Silent p.L1641L 0.25 TCGA-D3-A2JD-06 1 45295698 45295698 G A PTCH2 Missense_Mutation p.P273L 0.46 tolerated(0.54) benign(0.272) TCGA-D3-A2JD-06 1 53686255 53686255 C T C1orf123 5'UTR 0.39 TCGA-D3-A2JD-06 1 55075104 55075104 G A FAM151A Missense_Mutation p.S532F 0.21 deleterious(0.04) possibly_damaging(0.452) TCGA-D3-A2JD-06 1 55464879 55464879 T G BSND Missense_Mutation p.F7C 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 1 55464880 55464880 C T BSND Silent p.F7F 0.28 TCGA-D3-A2JD-06 1 57254701 57254701 C T C1orf168 Silent p.V288V 0.09 TCGA-D3-A2JD-06 1 8418267 8418267 G A RERE Missense_Mutation p.P1443L 0.14 unknown(0) TCGA-D3-A2JD-06 1 85422148 85422149 - T MCOLN2 Frame_Shift_Ins p.N177Kfs*2 0.17 TCGA-D3-A2JD-06 1 89844124 89844124 C T GBP6 Missense_Mutation p.P193S 0.11 tolerated(0.28) benign(0.009) TCGA-D3-A2JD-06 1 91985787 91985787 T G CDC7 Missense_Mutation p.I427M 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 1 94506906 94506906 C T ABCA4 Silent p.G1127G 0.18 TCGA-D3-A2JD-06 20 20350318 20350318 C T INSM1 Silent p.F469F 0.15 TCGA-D3-A2JD-06 20 23666490 23666490 G A CST4 3'UTR 0.31 TCGA-D3-A2JD-06 20 2559848 2559848 G A TMC2 Nonsense_Mutation p.W234* 0.26 TCGA-D3-A2JD-06 20 31826004 31826004 C T BPIFA1 Silent p.L102L 0.14 TCGA-D3-A2JD-06 20 31878803 31878803 G A BPIFB1 Missense_Mutation p.E136K 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A2JD-06 20 32379277 32379277 C T ZNF341 Missense_Mutation p.P833L 0.42 deleterious_low_confidence(0) benign(0.1) TCGA-D3-A2JD-06 20 37356406 37356406 G A SLC32A1 Silent p.P234P 0.20 TCGA-D3-A2JD-06 20 4202630 4202630 T C ADRA1D Missense_Mutation p.Q420R 0.30 tolerated(0.17) benign(0.005) TCGA-D3-A2JD-06 20 44054495 44054495 C T PIGT 3'UTR 0.17 TCGA-D3-A2JD-06 20 44596821 44596821 G A ZNF335 Intron 0.22 TCGA-D3-A2JD-06 20 44869812 44869812 C T CDH22 Missense_Mutation p.E114K 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2JD-06 20 49225065 49225065 C T FAM65C Missense_Mutation p.E269K 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 20 5283169 5283169 G A PROKR2 Silent p.F224F 0.16 TCGA-D3-A2JD-06 20 55026888 55026888 C T CASS4 Missense_Mutation p.P219L 0.15 tolerated(0.06) benign(0.005) TCGA-D3-A2JD-06 20 55750003 55750003 C T BMP7 Missense_Mutation p.R340Q 0.14 tolerated(0.68) possibly_damaging(0.582) TCGA-D3-A2JD-06 20 56227493 56227493 G A PMEPA1 Silent p.P160P 0.11 TCGA-D3-A2JD-06 20 56227583 56227583 G A PMEPA1 Silent p.F130F 0.29 TCGA-D3-A2JD-06 20 58645066 58645066 G A C20orf197 Missense_Mutation p.A13T 0.10 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-D3-A2JD-06 20 62065217 62065217 C T KCNQ2 Missense_Mutation p.D355N 0.11 tolerated(0.08) possibly_damaging(0.753) TCGA-D3-A2JD-06 20 62421446 62421446 C G ZBTB46 Missense_Mutation p.G222A 0.12 tolerated(0.11) benign(0.006) TCGA-D3-A2JD-06 20 9561418 9561418 C A PAK7 Nonsense_Mutation p.E122* 0.13 TCGA-D3-A2JD-06 21 28327101 28327101 T G ADAMTS5 Missense_Mutation p.E398D 0.17 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JD-06 21 34003881 34003881 C T SYNJ1 Silent p.R1421R 0.19 TCGA-D3-A2JD-06 21 34617307 34617307 C T IFNAR2 Missense_Mutation p.S50F 0.13 tolerated(0.07) probably_damaging(0.982) TCGA-D3-A2JD-06 21 34617308 34617308 C A IFNAR2 Silent p.S50S 0.14 TCGA-D3-A2JD-06 21 35247714 35247714 G A ITSN1 Silent p.L1410L 0.13 TCGA-D3-A2JD-06 21 39086700 39086700 G A KCNJ6 Missense_Mutation p.P254S 0.16 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JD-06 21 44299652 44299652 C T WDR4 5'UTR 0.17 TCGA-D3-A2JD-06 21 47531410 47531410 C T COL6A2 Missense_Mutation p.S7F 0.13 tolerated_low_confidence(0.57) benign(0.032) TCGA-D3-A2JD-06 22 25331491 25331491 C T TMEM211 Missense_Mutation p.E67K 0.42 tolerated(1) benign(0.017) TCGA-D3-A2JD-06 22 26423473 26423473 C T MYO18B Silent p.S2511S 0.45 TCGA-D3-A2JD-06 22 27019281 27019281 C T CRYBA4 Silent p.F41F 0.34 TCGA-D3-A2JD-06 22 32833812 32833812 G A BPIFC Silent p.L228L 0.37 TCGA-D3-A2JD-06 22 42422922 42422922 G A WBP2NL Missense_Mutation p.G223R 0.39 tolerated(0.11) probably_damaging(0.988) TCGA-D3-A2JD-06 2 100903504 100903504 C T LONRF2 Missense_Mutation p.E648K 0.16 deleterious(0) benign(0.175) TCGA-D3-A2JD-06 2 102965638 102965638 C T IL1RL1 Missense_Mutation p.P406L 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 2 107423119 107423119 C T ST6GAL2 3'UTR 0.10 TCGA-D3-A2JD-06 2 121106796 121106796 G A INHBB Silent p.E190E 0.17 TCGA-D3-A2JD-06 2 130832707 130832707 C T POTEF Missense_Mutation p.D780N 0.28 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-D3-A2JD-06 2 132021837 132021837 G A POTEE Missense_Mutation p.E937K 0.16 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-D3-A2JD-06 2 1459887 1459887 G A TPO Missense_Mutation p.E218K 0.27 tolerated(0.18) possibly_damaging(0.456) TCGA-D3-A2JD-06 2 162834230 162834230 A G SLC4A10 Splice_Site p.X1115_splice 0.14 TCGA-D3-A2JD-06 2 1652770 1652770 C T PXDN Missense_Mutation p.D928N 0.29 tolerated(0.22) possibly_damaging(0.577) TCGA-D3-A2JD-06 2 165947405 165947405 C T SCN3A Missense_Mutation p.S1753N 0.57 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JD-06 2 168104833 168104833 C T XIRP2 Missense_Mutation p.P2311S 0.24 probably_damaging(1) TCGA-D3-A2JD-06 2 176948300 176948300 C T EVX2 Missense_Mutation p.G69S 0.30 tolerated(0.05) possibly_damaging(0.46) TCGA-D3-A2JD-06 2 179472560 179472560 C A TTN Nonsense_Mutation p.E17652* 0.49 TCGA-D3-A2JD-06 2 179569996 179569996 T C TTN Missense_Mutation p.K9837E 0.26 TCGA-D3-A2JD-06 2 179665300 179665300 C T TTN Silent p.V135V 0.09 TCGA-D3-A2JD-06 2 183621054 183621054 C T DNAJC10 Missense_Mutation p.P556L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 2 185798353 185798353 G A ZNF804A Silent p.R93R 0.60 TCGA-D3-A2JD-06 2 189875617 189875617 G A COL3A1 Splice_Site p.X1418_splice 0.18 TCGA-D3-A2JD-06 2 190428646 190428646 C T SLC40A1 Missense_Mutation p.G356R 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 2 196729046 196729046 C T DNAH7 Missense_Mutation p.D2445N 0.31 tolerated(0.4) probably_damaging(0.958) TCGA-D3-A2JD-06 2 196774799 196774799 G A DNAH7 Silent p.F1352F 0.20 TCGA-D3-A2JD-06 2 207629981 207629981 G A MDH1B Silent p.V5V 0.13 TCGA-D3-A2JD-06 2 207651540 207651540 C T FASTKD2 Missense_Mutation p.S504L 0.38 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JD-06 2 209358320 209358320 C T PTH2R Missense_Mutation p.S530F 0.24 tolerated(0.46) benign(0.002) TCGA-D3-A2JD-06 2 21247901 21247901 C T APOB Silent p.L780L 0.15 TCGA-D3-A2JD-06 2 219295545 219295545 G A VIL1 Nonsense_Mutation p.W349* 0.12 TCGA-D3-A2JD-06 2 219888059 219888059 G A CCDC108 Missense_Mutation p.S897F 0.12 deleterious(0.01) possibly_damaging(0.712) TCGA-D3-A2JD-06 2 230636271 230636271 G A TRIP12 Silent p.F1849F 0.32 TCGA-D3-A2JD-06 2 230902209 230902209 A T SLC16A14 Missense_Mutation p.F474I 0.18 deleterious(0) probably_damaging(0.957) TCGA-D3-A2JD-06 2 231331029 231331029 C T SP100 Silent p.F385F 0.27 TCGA-D3-A2JD-06 2 234545621 234545621 T A UGT1A10 Missense_Mutation p.D151E 0.17 tolerated(0.15) possibly_damaging(0.9) TCGA-D3-A2JD-06 2 238270405 238270405 G A COL6A3 Missense_Mutation p.P2045S 0.12 benign(0.326) TCGA-D3-A2JD-06 2 238285803 238285803 C T COL6A3 Silent p.Q894Q 0.22 TCGA-D3-A2JD-06 2 239006840 239006840 C T SCLY Intron 0.22 TCGA-D3-A2JD-06 2 29256429 29256429 G A FAM179A Missense_Mutation p.G742E 0.28 deleterious(0.01) benign(0.045) TCGA-D3-A2JD-06 2 48030752 48030752 G A MSH6 Silent p.Q1122Q 0.21 TCGA-D3-A2JD-06 2 54483133 54483133 G A TSPYL6 Silent p.P52P 0.19 TCGA-D3-A2JD-06 2 73457337 73457337 G A PRADC1 Silent p.F24F 0.40 TCGA-D3-A2JD-06 2 85824241 85824241 C T RNF181 Silent p.P114P 0.20 TCGA-D3-A2JD-06 2 89399797 89399797 C T IGKV1-16 Missense_Mutation p.G11R 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-D3-A2JD-06 2 89475930 89475930 G A IGKV2-24 Missense_Mutation p.S81F 0.19 deleterious(0) possibly_damaging(0.869) TCGA-D3-A2JD-06 2 89513367 89513367 G A IGKV1-27 Missense_Mutation p.P6S 0.30 tolerated(0.05) benign(0.256) TCGA-D3-A2JD-06 2 99204045 99204045 G A INPP4A Missense_Mutation p.G970R 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 2 99439605 99439605 G A KIAA1211L Silent p.P377P 0.18 TCGA-D3-A2JD-06 3 100009430 100009430 C T TBC1D23 Missense_Mutation p.S162F 0.18 tolerated(0.73) benign(0.003) TCGA-D3-A2JD-06 3 100009431 100009431 C T TBC1D23 Silent p.S162S 0.16 TCGA-D3-A2JD-06 3 111325559 111325559 C T CD96 Missense_Mutation p.S383F 0.17 tolerated(0.38) benign(0.165) TCGA-D3-A2JD-06 3 122133664 122133664 C T WDR5B Missense_Mutation p.D238N 0.17 tolerated(0.77) benign(0.028) TCGA-D3-A2JD-06 3 128182144 128182144 C T DNAJB8 5'UTR 0.17 TCGA-D3-A2JD-06 3 128182145 128182145 C T DNAJB8 5'UTR 0.18 TCGA-D3-A2JD-06 3 136676961 136676961 G A IL20RB Silent p.Q2Q 0.26 TCGA-D3-A2JD-06 3 13669404 13669404 T G FBLN2 Missense_Mutation p.F835C 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JD-06 3 142172027 142172027 T C ATR Silent p.P2568P 0.34 TCGA-D3-A2JD-06 3 148939460 148939460 C T CP Silent p.G40G 0.15 TCGA-D3-A2JD-06 3 14964555 14964555 C T FGD5 Silent p.I1270I 0.20 TCGA-D3-A2JD-06 3 172165570 172165570 C T GHSR Missense_Mutation p.V212I 0.24 tolerated(0.65) benign(0.003) TCGA-D3-A2JD-06 3 172351310 172351310 G A NCEH1 Silent p.I434I 0.11 TCGA-D3-A2JD-06 3 186915469 186915469 G A RTP1 Missense_Mutation p.E56K 0.30 tolerated(0.29) benign(0.06) TCGA-D3-A2JD-06 3 193855629 193855629 C T HES1 Silent p.I150I 0.14 TCGA-D3-A2JD-06 3 195501092 195501092 T C MUC4 Missense_Mutation p.K4343R 0.24 benign(0.092) TCGA-D3-A2JD-06 3 26751458 26751458 G A LRRC3B Missense_Mutation p.G99S 0.21 tolerated(0.46) benign(0.004) TCGA-D3-A2JD-06 3 27760228 27760228 C T EOMES Missense_Mutation p.D439N 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 3 38768220 38768220 G A SCN10A Silent p.I988I 0.35 TCGA-D3-A2JD-06 3 47730890 47730890 G A SMARCC1 Missense_Mutation p.T417I 0.26 tolerated(0.15) benign(0.01) TCGA-D3-A2JD-06 3 89448538 89448538 C T EPHA3 Missense_Mutation p.P501L 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JD-06 3 97806489 97806489 C T OR5AC2 Missense_Mutation p.P158L 0.14 tolerated(0.14) benign(0.029) TCGA-D3-A2JD-06 4 114294472 114294472 C T ANK2 Missense_Mutation p.S3909F 0.34 possibly_damaging(0.717) TCGA-D3-A2JD-06 4 128651763 128651763 G A SLC25A31 Silent p.G21G 0.09 TCGA-D3-A2JD-06 4 155507125 155507125 C T FGA Missense_Mutation p.E486K 0.16 tolerated(0.09) possibly_damaging(0.532) TCGA-D3-A2JD-06 4 15937835 15937835 T A FGFBP1 Nonsense_Mutation p.K141* 0.15 TCGA-D3-A2JD-06 4 164506904 164506904 C T MARCH1 Silent p.R140R 0.13 TCGA-D3-A2JD-06 4 16510260 16510260 G A LDB2 Silent p.S263S 0.27 TCGA-D3-A2JD-06 4 175896987 175896987 G A ADAM29 Missense_Mutation p.G104D 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A2JD-06 4 175898651 175898651 G A ADAM29 Missense_Mutation p.G659R 0.27 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JD-06 4 25678243 25678243 G A SLC34A2 Missense_Mutation p.E649K 0.20 tolerated(0.1) benign(0.035) TCGA-D3-A2JD-06 4 3029658 3029658 C T GRK4 Silent p.D330D 0.10 TCGA-D3-A2JD-06 4 38798570 38798570 A G TLR1 Missense_Mutation p.L628S 0.20 tolerated(0.75) benign(0.074) TCGA-D3-A2JD-06 4 41984761 41984761 C T DCAF4L1 Silent p.L318L 0.19 TCGA-D3-A2JD-06 4 44724174 44724174 G A GNPDA2 Silent p.A17A 0.34 TCGA-D3-A2JD-06 4 57876932 57876932 G A POLR2B Missense_Mutation p.V523M 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A2JD-06 4 57876933 57876933 T A POLR2B Missense_Mutation p.V523E 0.12 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JD-06 4 651250 651250 G A PDE6B Silent p.V456V 0.11 TCGA-D3-A2JD-06 4 6865866 6865866 C T KIAA0232 Missense_Mutation p.P1253S 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.864) TCGA-D3-A2JD-06 4 73012782 73012782 C T NPFFR2 Silent p.I274I 0.10 TCGA-D3-A2JD-06 4 75231040 75231040 G A EREG Silent p.R5R 0.08 TCGA-D3-A2JD-06 4 77661510 77661510 G A SHROOM3 Silent p.R728R 0.16 TCGA-D3-A2JD-06 4 96762141 96762141 G A PDHA2 Missense_Mutation p.M280I 0.19 tolerated(0.22) benign(0.027) TCGA-D3-A2JD-06 5 113740249 113740249 T C KCNN2 Missense_Mutation p.Y233H 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A2JD-06 5 1238113 1238113 C T SLC6A18 Missense_Mutation p.L224F 0.20 tolerated(0.1) probably_damaging(0.973) TCGA-D3-A2JD-06 5 133895560 133895560 C T JADE2 Missense_Mutation p.P118S 0.21 tolerated(0.06) benign(0.029) TCGA-D3-A2JD-06 5 137600194 137600194 G A GFRA3 Silent p.L45L 0.45 TCGA-D3-A2JD-06 5 140517364 140517364 G A PCDHB5 Missense_Mutation p.G783E 0.16 tolerated_low_confidence(1) benign(0) TCGA-D3-A2JD-06 5 140532155 140532155 C T PCDHB6 Missense_Mutation p.P773S 0.22 tolerated_low_confidence(0.44) benign(0.002) TCGA-D3-A2JD-06 5 140699252 140699252 C T TAF7 Silent p.K120K 0.12 TCGA-D3-A2JD-06 5 140745591 140745591 C T PCDHGA5 Missense_Mutation p.P565L 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2JD-06 5 141025397 141025397 C T FCHSD1 Missense_Mutation p.V418M 0.29 deleterious(0.03) benign(0.01) TCGA-D3-A2JD-06 5 147653946 147653946 A C SPINK13 Missense_Mutation p.K36T 0.16 tolerated(0.19) benign(0.017) TCGA-D3-A2JD-06 5 149515419 149515419 G A PDGFRB Silent p.L21L 0.10 TCGA-D3-A2JD-06 5 149677575 149677575 C T ARSI Silent p.S304S 0.24 TCGA-D3-A2JD-06 5 153414364 153414364 C T FAM114A2 Silent p.R50R 0.14 TCGA-D3-A2JD-06 5 154394116 154394116 C T KIF4B Missense_Mutation p.R233C 0.16 tolerated(0.05) benign(0.022) TCGA-D3-A2JD-06 5 175530757 175530757 A C FAM153B Splice_Site p.X169_splice 0.11 TCGA-D3-A2JD-06 5 176314301 176314301 C T HK3 Silent p.T546T 0.20 TCGA-D3-A2JD-06 5 178373936 178373936 G A ZNF454 Missense_Mutation p.E67K 0.16 deleterious(0.03) benign(0.014) TCGA-D3-A2JD-06 5 38924659 38924659 G A OSMR Missense_Mutation p.R669K 0.18 tolerated(0.79) benign(0.004) TCGA-D3-A2JD-06 5 42801047 42801047 C T SEPP1 Silent p.L307L 0.09 TCGA-D3-A2JD-06 5 52229798 52229798 T C ITGA1 Missense_Mutation p.I979T 0.11 deleterious(0) benign(0.175) TCGA-D3-A2JD-06 5 54320110 54320110 C T GZMK 5'UTR 0.52 TCGA-D3-A2JD-06 5 54326316 54326316 G A GZMK Silent p.K89K 0.20 TCGA-D3-A2JD-06 5 5462223 5462223 C T KIAA0947 Missense_Mutation p.P926S 0.24 tolerated(0.09) possibly_damaging(0.453) TCGA-D3-A2JD-06 5 5462224 5462224 C T KIAA0947 Missense_Mutation p.P926L 0.24 tolerated(0.08) benign(0.059) TCGA-D3-A2JD-06 5 70806623 70806623 C T BDP1 Missense_Mutation p.S1235F 0.19 tolerated(0.14) benign(0.081) TCGA-D3-A2JD-06 5 78411693 78411693 C T BHMT Missense_Mutation p.P46L 0.24 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JD-06 6 116720663 116720663 G A DSE Missense_Mutation p.E84K 0.22 tolerated(0.21) possibly_damaging(0.737) TCGA-D3-A2JD-06 6 12163947 12163947 C T HIVEP1 Silent p.G2470G 0.14 TCGA-D3-A2JD-06 6 126242091 126242091 C T NCOA7 Silent p.I749I 0.25 TCGA-D3-A2JD-06 6 135507108 135507108 C T MYB Missense_Mutation p.P31S 0.25 tolerated(0.11) probably_damaging(0.979) TCGA-D3-A2JD-06 6 142409673 142409673 C T NMBR Silent p.V41V 0.31 TCGA-D3-A2JD-06 6 166578292 166578292 C T T Missense_Mutation p.E222K 0.11 deleterious(0) benign(0.137) TCGA-D3-A2JD-06 6 25983438 25983438 C T TRIM38 Silent p.L307L 0.23 TCGA-D3-A2JD-06 6 2671570 2671570 G A MYLK4 Missense_Mutation p.R378C 0.24 tolerated_low_confidence(0.07) benign(0) TCGA-D3-A2JD-06 6 27782121 27782121 C G HIST1H2AJ 3'UTR 0.12 TCGA-D3-A2JD-06 6 29323094 29323094 C T OR5V1 Silent p.R293R 0.24 TCGA-D3-A2JD-06 6 31698736 31698736 G A CLIC1 Silent p.F203F 0.15 TCGA-D3-A2JD-06 6 32015584 32015584 C T TNXB 5'Flank 0.13 TCGA-D3-A2JD-06 6 32155893 32155893 C T PBX2 Missense_Mutation p.R195K 0.15 tolerated(0.11) possibly_damaging(0.627) TCGA-D3-A2JD-06 6 33152075 33152075 G A COL11A2 Intron 0.16 TCGA-D3-A2JD-06 6 34101042 34101042 G A GRM4 Missense_Mutation p.R78W 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 6 35478663 35478663 C T TULP1 Silent p.R158R 0.17 TCGA-D3-A2JD-06 6 36711495 36711495 C T CPNE5 Missense_Mutation p.G512R 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JD-06 6 41712205 41712205 G A PGC Silent p.F86F 0.19 TCGA-D3-A2JD-06 6 42851233 42851233 C T RPL7L1 Silent p.F55F 0.14 TCGA-D3-A2JD-06 6 43030861 43030861 G A KLC4 Silent p.Q173Q 0.11 TCGA-D3-A2JD-06 6 43269383 43269383 C T SLC22A7 Silent p.F338F 0.17 TCGA-D3-A2JD-06 6 44227798 44227798 G A NFKBIE Silent p.P473P 0.24 TCGA-D3-A2JD-06 6 54805985 54805985 C T FAM83B Missense_Mutation p.S739F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 6 56422233 56422233 G A DST Nonsense_Mutation p.Q2219* 0.19 TCGA-D3-A2JD-06 6 7231149 7231149 C T RREB1 Silent p.I939I 0.15 TCGA-D3-A2JD-06 6 7585419 7585419 G A DSP Missense_Mutation p.V2642I 0.20 probably_damaging(0.981) TCGA-D3-A2JD-06 6 76024012 76024012 C T FILIP1 Silent p.R512R 0.19 TCGA-D3-A2JD-06 6 84055900 84055900 C T ME1 Missense_Mutation p.E198K 0.16 deleterious(0) benign(0.207) TCGA-D3-A2JD-06 7 100004335 100004335 G A ZCWPW1 Silent p.S384S 0.11 TCGA-D3-A2JD-06 7 100087049 100087049 G A NYAP1 Missense_Mutation p.A569T 0.45 tolerated(0.3) benign(0.376) TCGA-D3-A2JD-06 7 103206798 103206798 T C RELN Silent p.Q1603Q 0.35 TCGA-D3-A2JD-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.42 tolerated(0.12) benign(0.063) TCGA-D3-A2JD-06 7 119915143 119915143 G A KCND2 Missense_Mutation p.D153N 0.12 tolerated(0.27) benign(0.002) TCGA-D3-A2JD-06 7 130027771 130027771 C T CPA1 Silent p.A393A 0.25 TCGA-D3-A2JD-06 7 130027801 130027801 G C CPA1 Silent p.T403T 0.16 TCGA-D3-A2JD-06 7 139416787 139416787 G A HIPK2 Missense_Mutation p.S16F 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A2JD-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JD-06 7 142099663 142099663 C T TRBV7-8 Missense_Mutation p.G47S 0.32 tolerated(0.05) possibly_damaging(0.562) TCGA-D3-A2JD-06 7 142612196 142612196 A C TRPV5 Missense_Mutation p.V436G 0.44 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JD-06 7 148701009 148701009 G A PDIA4 Silent p.F605F 0.14 TCGA-D3-A2JD-06 7 148769496 148769496 G A ZNF786 Missense_Mutation p.S123F 0.50 tolerated(0.13) benign(0.021) TCGA-D3-A2JD-06 7 149521519 149521519 C T SSPO RNA 0.20 TCGA-D3-A2JD-06 7 150070060 150070060 G A REPIN1 3'Flank 0.38 TCGA-D3-A2JD-06 7 151082316 151082316 G A WDR86 Intron 0.17 TCGA-D3-A2JD-06 7 155599242 155599242 C T SHH Missense_Mutation p.D104N 0.16 deleterious(0) probably_damaging(0.928) TCGA-D3-A2JD-06 7 155599243 155599243 C T SHH Silent p.K103K 0.19 TCGA-D3-A2JD-06 7 20418758 20418758 C T ITGB8 Missense_Mutation p.S158L 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 7 21628922 21628922 G A DNAH11 Nonsense_Mutation p.W690* 0.12 TCGA-D3-A2JD-06 7 21631164 21631164 G A DNAH11 Missense_Mutation p.G879E 0.23 benign(0) TCGA-D3-A2JD-06 7 31890260 31890260 C T PDE1C Silent p.Q342Q 0.22 TCGA-D3-A2JD-06 7 36447420 36447420 T C ANLN Silent p.L317L 0.16 TCGA-D3-A2JD-06 7 47847972 47847972 C T PKD1L1 Missense_Mutation p.G2567E 0.15 deleterious(0) probably_damaging(0.978) TCGA-D3-A2JD-06 7 50682476 50682476 G A GRB10 Silent p.L362L 0.11 TCGA-D3-A2JD-06 7 56128511 56128511 C T CCT6A Missense_Mutation p.P409S 0.29 deleterious(0.03) benign(0.254) TCGA-D3-A2JD-06 7 66406954 66406954 C T TMEM248 Silent p.F34F 0.10 TCGA-D3-A2JD-06 7 70885919 70885919 C T WBSCR17 Nonsense_Mutation p.Q264* 0.30 TCGA-D3-A2JD-06 7 73010224 73010224 C T MLXIPL Missense_Mutation p.E712K 0.19 deleterious(0) possibly_damaging(0.717) TCGA-D3-A2JD-06 7 73021319 73021319 G A MLXIPL Silent p.L201L 0.12 TCGA-D3-A2JD-06 7 73604036 73604036 C T EIF4H Missense_Mutation p.S94F 0.13 deleterious(0.02) possibly_damaging(0.844) TCGA-D3-A2JD-06 7 7628179 7628179 C T MIOS Silent p.F623F 0.60 TCGA-D3-A2JD-06 7 82546123 82546123 G A PCLO Missense_Mutation p.P3727S 0.23 unknown(0) TCGA-D3-A2JD-06 7 82997307 82997307 G A SEMA3E Silent p.F641F 0.13 TCGA-D3-A2JD-06 7 83029395 83029395 C T SEMA3E Missense_Mutation p.D439N 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 7 86479836 86479836 G A GRM3 Missense_Mutation p.G848R 0.29 tolerated(0.24) possibly_damaging(0.526) TCGA-D3-A2JD-06 7 92730882 92730882 G A SAMD9 Missense_Mutation p.S1510F 0.19 tolerated(0.13) benign(0.004) TCGA-D3-A2JD-06 8 10466293 10466293 C T RP1L1 Missense_Mutation p.R1772K 0.18 unknown(0) TCGA-D3-A2JD-06 8 133187715 133187715 G A KCNQ3 Silent p.A306A 0.19 TCGA-D3-A2JD-06 8 139734322 139734322 C T COL22A1 Missense_Mutation p.G753E 0.23 unknown(0) TCGA-D3-A2JD-06 8 145057685 145057685 G A PARP10 Missense_Mutation p.P691L 0.17 tolerated(0.08) benign(0.001) TCGA-D3-A2JD-06 8 145138651 145138651 G A GPAA1 Missense_Mutation p.R134Q 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 8 145138652 145138652 G A GPAA1 Silent p.R134R 0.15 TCGA-D3-A2JD-06 8 2830697 2830697 G A CSMD1 Silent p.S2955S 0.24 TCGA-D3-A2JD-06 8 56435900 56435900 C T XKR4 Missense_Mutation p.A356V 0.21 tolerated(1) possibly_damaging(0.881) TCGA-D3-A2JD-06 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.45 deleterious(0) possibly_damaging(0.547) TCGA-D3-A2JD-06 8 77762566 77762566 C T ZFHX4 Missense_Mutation p.A1311V 0.20 benign(0) TCGA-D3-A2JD-06 8 95262715 95262715 C T GEM Silent p.Q238Q 0.13 TCGA-D3-A2JD-06 9 100122382 100122382 C T CCDC180 Missense_Mutation p.T1205I 0.16 deleterious(0.02) possibly_damaging(0.702) TCGA-D3-A2JD-06 9 101765859 101765859 G A COL15A1 Missense_Mutation p.G397E 0.12 tolerated_low_confidence(0.55) benign(0.003) TCGA-D3-A2JD-06 9 107289083 107289083 C T OR13C4 Missense_Mutation p.M136I 0.36 deleterious(0.03) benign(0.008) TCGA-D3-A2JD-06 9 107298387 107298387 G A OR13C3 Silent p.F236F 0.18 TCGA-D3-A2JD-06 9 115422149 115422149 C T KIAA1958 Missense_Mutation p.P651S 0.21 deleterious(0.01) possibly_damaging(0.467) TCGA-D3-A2JD-06 9 116269666 116269666 G A RGS3 Silent p.S395S 0.31 TCGA-D3-A2JD-06 9 121971091 121971091 C A BRINP1 Missense_Mutation p.A351S 0.21 tolerated(0.8) benign(0.076) TCGA-D3-A2JD-06 9 131670604 131670604 C T LRRC8A Silent p.S387S 0.35 TCGA-D3-A2JD-06 9 135537919 135537919 G A DDX31 Missense_Mutation p.S185L 0.10 tolerated(0.35) benign(0.002) TCGA-D3-A2JD-06 9 136320568 136320568 C T ADAMTS13 Silent p.S1137S 0.19 TCGA-D3-A2JD-06 9 136323178 136323178 G A ADAMTS13 Missense_Mutation p.G1347S 0.15 tolerated(0.1) benign(0.141) TCGA-D3-A2JD-06 9 137623968 137623968 G A COL5A1 Missense_Mutation p.E462K 0.19 probably_damaging(0.986) TCGA-D3-A2JD-06 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.49 TCGA-D3-A2JD-06 9 75387400 75387400 C T TMC1 Silent p.F271F 0.51 TCGA-D3-A2JD-06 9 8504363 8504363 C T PTPRD Missense_Mutation p.G574R 0.18 tolerated(0.14) probably_damaging(0.93) TCGA-D3-A2JD-06 X 100505941 100505941 C T DRP2 Silent p.F578F 0.34 TCGA-D3-A2JD-06 X 106083958 106083958 C T TBC1D8B Silent p.S521S 0.31 TCGA-D3-A2JD-06 X 129519283 129519283 G A GPR119 Silent p.L47L 0.28 TCGA-D3-A2JD-06 X 137715099 137715099 C T FGF13 Missense_Mutation p.R227Q 0.29 tolerated_low_confidence(0.27) possibly_damaging(0.815) TCGA-D3-A2JD-06 X 140993513 140993513 C T MAGEC1 Missense_Mutation p.S108F 0.53 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A2JD-06 X 148039955 148039955 C A AFF2 Missense_Mutation p.P886Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 X 148044319 148044319 A C AFF2 Missense_Mutation p.E922A 0.53 deleterious(0.01) possibly_damaging(0.735) TCGA-D3-A2JD-06 X 150912208 150912208 G A CNGA2 Silent p.R411R 0.27 TCGA-D3-A2JD-06 X 152226196 152226196 G A PNMA3 Missense_Mutation p.E262K 0.24 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JD-06 X 19413209 19413209 C A MAP3K15 Missense_Mutation p.Q728H 0.21 deleterious(0.03) possibly_damaging(0.617) TCGA-D3-A2JD-06 X 19983592 19983592 G A CXorf23 Missense_Mutation p.R282C 0.30 tolerated(0.12) benign(0.049) TCGA-D3-A2JD-06 X 30577915 30577915 G A CXorf21 Silent p.S186S 0.13 TCGA-D3-A2JD-06 X 34148193 34148193 C T FAM47A Missense_Mutation p.G735R 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JD-06 X 39923809 39923809 G A BCOR Silent p.A1094A 0.32 TCGA-D3-A2JD-06 X 47428183 47428183 C T ARAF Silent p.I381I 0.35 TCGA-D3-A2JD-06 X 48665055 48665055 C T HDAC6 Missense_Mutation p.L192F 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JD-06 X 51076066 51076066 C T NUDT10 Silent p.F83F 0.26 TCGA-D3-A2JD-06 X 53245345 53245345 G A KDM5C Missense_Mutation p.P231L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JD-06 X 64139153 64139153 C T ZC4H2 Intron 0.33 TCGA-D3-A2JD-06 X 71521587 71521587 G A CITED1 Missense_Mutation p.P216S 0.39 tolerated(0.07) benign(0.133) TCGA-D3-A2JD-06 X 72433836 72433836 C T NAP1L2 Missense_Mutation p.E165K 0.40 deleterious(0.05) probably_damaging(0.992) TCGA-D3-A2JD-06 X 73065144 73065144 G A XIST RNA 0.34 TCGA-D3-A2JD-06 X 73965442 73965442 C T KIAA2022 Missense_Mutation p.G15E 0.24 tolerated_low_confidence(0.18) benign(0.014) TCGA-D3-A2JE-06 10 104163017 104163017 C T PSD Silent p.R1005R 0.31 TCGA-D3-A2JE-06 10 124268261 124268261 G A HTRA1 Silent p.T365T 0.30 TCGA-D3-A2JE-06 10 124359610 124359610 G C DMBT1 Splice_Site p.X1104_splice 0.25 TCGA-D3-A2JE-06 10 129901878 129901878 G A MKI67 Silent p.F2742F 0.58 TCGA-D3-A2JE-06 10 18242125 18242125 C T SLC39A12 5'UTR 0.48 TCGA-D3-A2JE-06 10 24832948 24832948 C T KIAA1217 Silent p.A1583A 0.17 TCGA-D3-A2JE-06 10 33495168 33495168 C T NRP1 Intron 0.34 TCGA-D3-A2JE-06 10 45499420 45499420 A - ZNF22 Frame_Shift_Del p.I202Sfs*3 0.34 TCGA-D3-A2JE-06 10 5436399 5436399 C T TUBAL3 Missense_Mutation p.G141E 0.23 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D3-A2JE-06 10 55568614 55568614 C T PCDH15 Silent p.V666V 0.44 TCGA-D3-A2JE-06 10 55568842 55568842 C T PCDH15 Silent p.R590R 0.29 TCGA-D3-A2JE-06 10 61832908 61832908 C T ANK3 Silent p.V2577V 0.50 TCGA-D3-A2JE-06 10 67862999 67862999 C T CTNNA3 Silent p.E631E 0.67 TCGA-D3-A2JE-06 10 94836847 94836847 C T CYP26A1 Missense_Mutation p.A427V 0.24 tolerated(0.09) benign(0.021) TCGA-D3-A2JE-06 11 10580698 10580698 G A LYVE1 Missense_Mutation p.P310L 0.44 deleterious(0.01) benign(0.022) TCGA-D3-A2JE-06 11 118123011 118123011 C T MPZL3 5'UTR 0.20 TCGA-D3-A2JE-06 11 120989417 120989417 G A TECTA Missense_Mutation p.G398E 0.65 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A2JE-06 11 121428080 121428080 C T SORL1 Missense_Mutation p.R877C 0.27 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JE-06 11 123909166 123909166 C T OR10G7 Silent p.P181P 0.26 TCGA-D3-A2JE-06 11 124189278 124189278 C T OR8D2 Silent p.K272K 0.57 TCGA-D3-A2JE-06 11 124293893 124293893 C T OR8B4 Missense_Mutation p.R292K 0.33 deleterious_low_confidence(0.01) benign(0.004) TCGA-D3-A2JE-06 11 125880442 125880442 G A CDON Missense_Mutation p.P449L 0.53 tolerated(0.14) benign(0.12) TCGA-D3-A2JE-06 11 1272596 1272596 C T MUC5B Missense_Mutation p.T4829I 0.48 unknown(0) TCGA-D3-A2JE-06 11 1651463 1651463 C T KRTAP5-5 Silent p.S131S 0.30 TCGA-D3-A2JE-06 11 28318405 28318405 C T METTL15 Silent p.I235I 0.36 TCGA-D3-A2JE-06 11 32657259 32657259 C T CCDC73 Missense_Mutation p.E390K 0.36 deleterious(0.03) possibly_damaging(0.453) TCGA-D3-A2JE-06 11 3687400 3687400 G A CHRNA10 Silent p.F430F 0.38 TCGA-D3-A2JE-06 11 48511034 48511034 G A OR4A47 Silent p.G230G 0.44 TCGA-D3-A2JE-06 11 4929071 4929071 C T OR51A7 Missense_Mutation p.P158S 0.48 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JE-06 11 49831369 49831369 G A RP11-707M1.1 RNA 0.36 TCGA-D3-A2JE-06 11 5068535 5068535 C T OR52J3 Silent p.F260F 0.52 TCGA-D3-A2JE-06 11 55322440 55322440 C T OR4C15 Missense_Mutation p.P220S 0.27 deleterious_low_confidence(0.03) benign(0.155) TCGA-D3-A2JE-06 11 55322792 55322792 C T OR4C15 Missense_Mutation p.P337L 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JE-06 11 55433299 55433299 C T OR4C6 Silent p.I219I 0.57 TCGA-D3-A2JE-06 11 55579870 55579870 C T OR5L1 Missense_Mutation p.H310Y 0.68 tolerated(0.76) benign(0) TCGA-D3-A2JE-06 11 55735343 55735343 C T OR10AG1 Silent p.T199T 0.55 TCGA-D3-A2JE-06 11 56230125 56230125 C T OR5M9 Silent p.G251G 0.42 TCGA-D3-A2JE-06 11 5757908 5757908 C T OR56B1 Silent p.I54I 0.35 TCGA-D3-A2JE-06 11 57971616 57971616 T G OR1S2 Missense_Mutation p.N13T 0.17 tolerated(0.63) benign(0.154) TCGA-D3-A2JE-06 11 60229903 60229903 G A MS4A1 Missense_Mutation p.G19D 0.28 deleterious(0.02) probably_damaging(0.911) TCGA-D3-A2JE-06 11 6023809 6023809 G A OR56A4 Silent p.I190I 0.64 TCGA-D3-A2JE-06 11 60268529 60268529 C T MS4A12 Silent p.I96I 0.26 TCGA-D3-A2JE-06 11 60274528 60274528 C - MS4A12 Frame_Shift_Del p.P246Lfs*2 0.16 TCGA-D3-A2JE-06 11 6220932 6220934 TTG - OR52W1 In_Frame_Del p.V162del 0.44 TCGA-D3-A2JE-06 11 63988613 63988613 G A FERMT3 Splice_Site p.X561_splice 0.34 TCGA-D3-A2JE-06 11 6423957 6423957 T C APBB1 Splice_Site p.X369_splice 0.44 TCGA-D3-A2JE-06 11 7083661 7083661 G A NLRP14 Missense_Mutation p.D968N 0.42 tolerated(0.59) benign(0.009) TCGA-D3-A2JE-06 11 78433760 78433760 A G TENM4 Silent p.I1251I 0.49 TCGA-D3-A2JE-06 11 7984801 7984801 A C NLRP10 Missense_Mutation p.M81R 0.12 deleterious(0.03) possibly_damaging(0.906) TCGA-D3-A2JE-06 11 88059475 88059475 G A CTSC Intron 0.37 TCGA-D3-A2JE-06 12 103232982 103232982 G A PAH Missense_Mutation p.L444F 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-D3-A2JE-06 12 104081963 104081963 C T STAB2 Silent p.S1005S 0.21 TCGA-D3-A2JE-06 12 106734758 106734758 C T TCP11L2 Missense_Mutation p.P433S 0.49 tolerated(0.1) benign(0.323) TCGA-D3-A2JE-06 12 108051293 108051293 G A BTBD11 Missense_Mutation p.G1038E 0.21 tolerated(0.21) benign(0.346) TCGA-D3-A2JE-06 12 113737466 113737466 G A SLC8B1 3'UTR 0.50 TCGA-D3-A2JE-06 12 121154523 121154523 C T UNC119B Missense_Mutation p.L151F 0.37 deleterious(0.01) possibly_damaging(0.541) TCGA-D3-A2JE-06 12 123200468 123200468 C T HCAR3 Missense_Mutation p.D273N 0.11 tolerated(0.56) probably_damaging(0.999) TCGA-D3-A2JE-06 12 124350598 124350598 G A DNAH10 Nonsense_Mutation p.W2264* 0.43 TCGA-D3-A2JE-06 12 14766098 14766098 C T GUCY2C Missense_Mutation p.E1059K 0.55 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-D3-A2JE-06 12 32136258 32136258 C T KIAA1551 Missense_Mutation p.P790L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 12 4543396 4543396 G A FGF6 Silent p.F204F 0.22 TCGA-D3-A2JE-06 12 51888827 51888827 C T SLC4A8 Silent p.T956T 0.19 TCGA-D3-A2JE-06 12 55356755 55356755 C T TESPA1 Silent p.R309R 0.45 TCGA-D3-A2JE-06 12 55420389 55420391 GAA - NEUROD4 In_Frame_Del p.E62del 0.17 TCGA-D3-A2JE-06 12 57178769 57178769 G A HSD17B6 Silent p.K235K 0.56 TCGA-D3-A2JE-06 12 58019526 58019526 T C SLC26A10 Nonstop_Mutation p.*564Rext*42 0.33 TCGA-D3-A2JE-06 12 79689913 79689913 C T SYT1 Missense_Mutation p.P180L 0.31 deleterious(0.03) possibly_damaging(0.897) TCGA-D3-A2JE-06 12 80699404 80699404 G A OTOGL Missense_Mutation p.D1079N 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 12 8212729 8212729 C T C3AR1 Nonsense_Mutation p.W18* 0.50 TCGA-D3-A2JE-06 13 109535447 109535447 C T MYO16 Missense_Mutation p.S467F 0.60 deleterious(0) probably_damaging(0.948) TCGA-D3-A2JE-06 13 28588626 28588626 G A FLT3 Missense_Mutation p.S941L 0.24 deleterious(0.02) possibly_damaging(0.838) TCGA-D3-A2JE-06 13 42789798 42789798 C T DGKH Missense_Mutation p.P1070S 0.54 tolerated(1) benign(0.081) TCGA-D3-A2JE-06 13 48939033 48939033 A T RB1 Nonsense_Mutation p.K289* 0.50 TCGA-D3-A2JE-06 13 49050851 49050851 C T RB1 Silent p.F845F 0.28 TCGA-D3-A2JE-06 13 49050852 49050852 C T RB1 Nonsense_Mutation p.Q846* 0.27 TCGA-D3-A2JE-06 13 52661488 52661488 C T NEK5 Missense_Mutation p.E460K 0.60 tolerated(0.29) benign(0.013) TCGA-D3-A2JE-06 14 101506599 101506599 C T MIR654 RNA 0.26 TCGA-D3-A2JE-06 14 105409428 105409428 G A AHNAK2 Silent p.S4120S 0.54 TCGA-D3-A2JE-06 14 20917126 20917126 T C OSGEP Missense_Mutation p.K185R 0.28 tolerated(0.27) benign(0.074) TCGA-D3-A2JE-06 14 21109662 21109662 G A OR6S1 Silent p.F63F 0.49 TCGA-D3-A2JE-06 14 23354011 23354011 C T REM2 Missense_Mutation p.R78W 0.27 deleterious(0) possibly_damaging(0.84) TCGA-D3-A2JE-06 14 23872647 23872647 C T MYH6 Missense_Mutation p.E270K 0.57 deleterious(0) possibly_damaging(0.812) TCGA-D3-A2JE-06 14 23872648 23872648 C T MYH6 Silent p.L269L 0.56 TCGA-D3-A2JE-06 14 24877494 24877494 C T NYNRIN Silent p.L206L 0.44 TCGA-D3-A2JE-06 14 51411144 51411144 G A PYGL 5'UTR 0.58 TCGA-D3-A2JE-06 14 70242929 70242930 CT - SLC10A1 3'UTR 0.21 TCGA-D3-A2JE-06 14 74988633 74988633 C T LTBP2 Silent p.G923G 0.20 TCGA-D3-A2JE-06 14 77808138 77808138 G C TMED8 Nonsense_Mutation p.Y318* 0.62 TCGA-D3-A2JE-06 14 91252592 91252592 G A TTC7B Missense_Mutation p.P68S 0.15 tolerated(0.21) benign(0.033) TCGA-D3-A2JE-06 14 95033567 95033567 T A SERPINA4 Missense_Mutation p.L304M 0.23 tolerated(0.07) possibly_damaging(0.81) TCGA-D3-A2JE-06 15 22369154 22369154 C T OR4M2 Silent p.F193F 0.21 TCGA-D3-A2JE-06 15 22383199 22383199 C T OR4N4 Missense_Mutation p.R243C 0.30 deleterious(0) possibly_damaging(0.512) TCGA-D3-A2JE-06 15 24921694 24921694 C G NPAP1 Missense_Mutation p.A227G 0.46 deleterious(0.01) benign(0.301) TCGA-D3-A2JE-06 15 24922069 24922069 C T NPAP1 Missense_Mutation p.P352L 0.25 deleterious(0.05) possibly_damaging(0.849) TCGA-D3-A2JE-06 15 26793250 26793250 G A GABRB3 Missense_Mutation p.S371L 0.18 tolerated(0.13) benign(0.129) TCGA-D3-A2JE-06 15 34110851 34110851 C T RYR3 Missense_Mutation p.L3558F 0.23 possibly_damaging(0.866) TCGA-D3-A2JE-06 15 40657833 40657833 G A DISP2 Silent p.K284K 0.38 TCGA-D3-A2JE-06 15 43044271 43044271 G A TTBK2 Missense_Mutation p.S1058L 0.41 deleterious(0) benign(0.146) TCGA-D3-A2JE-06 15 48707786 48707786 G A FBN1 Silent p.T2666T 0.59 TCGA-D3-A2JE-06 15 60919469 60919469 G A RORA Silent p.A35A 0.59 TCGA-D3-A2JE-06 15 71341876 71341876 G A LRRC49 Silent p.R667R 0.46 TCGA-D3-A2JE-06 15 79265751 79265751 G A RASGRF1 Missense_Mutation p.P1185L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 15 81176623 81176623 G A KIAA1199 Missense_Mutation p.R242Q 0.61 deleterious(0.05) benign(0.016) TCGA-D3-A2JE-06 15 85189580 85189580 C T WDR73 Splice_Site p.X118_splice 0.57 TCGA-D3-A2JE-06 15 90785259 90785259 G A GDPGP1 Silent p.Q373Q 0.55 TCGA-D3-A2JE-06 15 90815008 90815008 G C NGRN Silent p.L288L 0.26 TCGA-D3-A2JE-06 16 20322504 20322504 G A GP2 3'UTR 0.39 TCGA-D3-A2JE-06 16 20970609 20970609 C T DNAH3 Missense_Mutation p.G3573E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 16 2338081 2338081 C T ABCA3 Missense_Mutation p.E984K 0.50 tolerated(0.77) benign(0.015) TCGA-D3-A2JE-06 16 23700989 23700989 T A PLK1 Missense_Mutation p.F534I 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 16 24105539 24105539 G A PRKCB Missense_Mutation p.D248N 0.50 deleterious(0.03) possibly_damaging(0.826) TCGA-D3-A2JE-06 16 24231511 24231511 G A PRKCB 3'UTR 0.50 TCGA-D3-A2JE-06 16 24902371 24902371 C T SLC5A11 Silent p.S282S 0.40 TCGA-D3-A2JE-06 16 27353545 27353545 C T IL4R Silent p.L58L 0.45 TCGA-D3-A2JE-06 16 29376027 29376027 G A SNX29P2 RNA 0.29 TCGA-D3-A2JE-06 16 29859246 29859246 C T MVP Missense_Mutation p.S873F 0.42 tolerated_low_confidence(0.66) benign(0.015) TCGA-D3-A2JE-06 16 30410243 30410243 C T ZNF48 Silent p.L558L 0.36 TCGA-D3-A2JE-06 16 3293600 3293600 C A MEFV Silent p.L629L 0.40 TCGA-D3-A2JE-06 16 3860637 3860637 G A CREBBP Silent p.I314I 0.40 TCGA-D3-A2JE-06 16 422698 422698 G A TMEM8A Silent p.I644I 0.41 TCGA-D3-A2JE-06 16 52473326 52473326 G A TOX3 Silent p.L514L 0.67 TCGA-D3-A2JE-06 16 67686213 67686213 C T RLTPR Missense_Mutation p.P930S 0.49 tolerated(0.12) benign(0.017) TCGA-D3-A2JE-06 16 70897085 70897085 C T HYDIN Silent p.E3824E 0.18 TCGA-D3-A2JE-06 16 84224965 84224965 G A ADAD2 Nonsense_Mutation p.W43* 0.43 TCGA-D3-A2JE-06 16 85839532 85839532 T C COX4I1 Intron 0.43 TCGA-D3-A2JE-06 16 88779305 88779305 G A CTU2 Silent p.Q243Q 0.37 TCGA-D3-A2JE-06 16 90160990 90160990 G A TUBB8P7 Intron 0.20 TCGA-D3-A2JE-06 17 16691340 16691340 G A CCDC144A 3'UTR 0.28 TCGA-D3-A2JE-06 17 17701145 17701145 C T RAI1 Missense_Mutation p.S1628F 0.32 tolerated_low_confidence(0.09) benign(0.012) TCGA-D3-A2JE-06 17 18387232 18387232 G A LGALS9C Missense_Mutation p.G28E 0.82 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 17 37791896 37791896 G A PPP1R1B Missense_Mutation p.G161E 0.44 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-D3-A2JE-06 17 39535894 39535894 G A KRT34 Silent p.N268N 0.42 TCGA-D3-A2JE-06 17 40485909 40485909 C T STAT3 Missense_Mutation p.S319N 0.46 tolerated(0.4) benign(0.124) TCGA-D3-A2JE-06 17 43209641 43209641 G T PLCD3 Missense_Mutation p.P46H 0.24 deleterious(0.03) possibly_damaging(0.893) TCGA-D3-A2JE-06 17 43555479 43555479 G A PLEKHM1 Missense_Mutation p.A28V 0.38 deleterious(0) possibly_damaging(0.469) TCGA-D3-A2JE-06 17 45915746 45915746 C T SCRN2 Missense_Mutation p.G337R 0.40 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JE-06 17 58512745 58512745 C T C17orf64 3'Flank 0.39 TCGA-D3-A2JE-06 17 6524154 6524154 G A KIAA0753 Silent p.F423F 0.37 TCGA-D3-A2JE-06 17 7187350 7187350 G A SLC2A4 Missense_Mutation p.R169Q 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JE-06 17 7187351 7187351 G A SLC2A4 Silent p.R169R 0.23 TCGA-D3-A2JE-06 17 72916383 72916383 G C USH1G Missense_Mutation p.S183C 0.17 tolerated(0.05) probably_damaging(0.91) TCGA-D3-A2JE-06 17 72920790 72920790 G A OTOP2 Silent p.R21R 0.27 TCGA-D3-A2JE-06 17 74278070 74278070 G A QRICH2 Missense_Mutation p.P1214S 0.50 deleterious(0) probably_damaging(0.953) TCGA-D3-A2JE-06 17 76491089 76491089 C T DNAH17 Silent p.R1984R 0.32 TCGA-D3-A2JE-06 17 78269422 78269422 G A RNF213 Silent p.T607T 0.37 TCGA-D3-A2JE-06 18 28934515 28934515 C T DSG1 Missense_Mutation p.P786S 0.63 tolerated(0.19) benign(0.012) TCGA-D3-A2JE-06 18 30092797 30092797 C T WBP11P1 RNA 0.34 TCGA-D3-A2JE-06 18 31463370 31463370 C T NOL4 Missense_Mutation p.D521N 0.08 deleterious(0.02) benign(0.346) TCGA-D3-A2JE-06 18 61304833 61304833 C T SERPINB4 3'UTR 0.22 TCGA-D3-A2JE-06 18 6876178 6876178 C T ARHGAP28 Nonsense_Mutation p.R262* 0.36 TCGA-D3-A2JE-06 18 76753275 76753275 C G SALL3 Silent p.V428V 0.08 TCGA-D3-A2JE-06 18 76755181 76755181 G A SALL3 Missense_Mutation p.E1064K 0.58 deleterious(0) probably_damaging(0.935) TCGA-D3-A2JE-06 19 10116258 10116258 C T COL5A3 Silent p.Q190Q 0.50 TCGA-D3-A2JE-06 19 14938355 14938355 C T OR7A5 Silent p.G233G 0.50 TCGA-D3-A2JE-06 19 15164750 15164750 C T CASP14 Silent p.I128I 0.61 TCGA-D3-A2JE-06 19 16045100 16045100 G A CYP4F11 Missense_Mutation p.T40I 0.38 tolerated(0.09) benign(0.005) TCGA-D3-A2JE-06 19 17722627 17722627 G A UNC13A Silent p.V1532V 0.47 TCGA-D3-A2JE-06 19 21216388 21216388 G A ZNF430 Missense_Mutation p.A75T 0.39 tolerated(0.14) benign(0.013) TCGA-D3-A2JE-06 19 37441221 37441221 C A ZNF568 Missense_Mutation p.P389H 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 19 38609982 38609982 C T SIPA1L3 Silent p.F776F 0.47 TCGA-D3-A2JE-06 19 40581034 40581034 G A ZNF780A Missense_Mutation p.H440Y 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JE-06 19 43674281 43674281 C T PSG5 Missense_Mutation p.G325E 0.55 tolerated(0.64) benign(0.005) TCGA-D3-A2JE-06 19 43766275 43766275 G A PSG9 Missense_Mutation p.P149L 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JE-06 19 44946795 44946795 A T ZNF229 Silent p.S15S 0.16 TCGA-D3-A2JE-06 19 49814222 49814222 C T SLC6A16 Missense_Mutation p.R128H 0.13 tolerated(0.27) benign(0.053) TCGA-D3-A2JE-06 19 50475311 50475311 G A VRK3 3'Flank 0.48 TCGA-D3-A2JE-06 19 51165124 51165124 C T SHANK1 3'UTR 0.21 TCGA-D3-A2JE-06 19 52031506 52031506 C T SIGLEC6 Nonsense_Mutation p.W338* 0.38 TCGA-D3-A2JE-06 19 52869459 52869459 A C ZNF610 Silent p.A276A 0.14 TCGA-D3-A2JE-06 19 54445700 54445700 C T CACNG7 3'UTR 0.80 TCGA-D3-A2JE-06 19 5455648 5455648 C T ZNRF4 Missense_Mutation p.P49L 0.31 tolerated_low_confidence(0.55) benign(0.008) TCGA-D3-A2JE-06 19 55106584 55106584 C T LILRA1 Silent p.T126T 0.55 TCGA-D3-A2JE-06 19 55481557 55481557 C T NLRP2 Silent p.I58I 0.52 TCGA-D3-A2JE-06 19 56477634 56477634 G A NLRP8 Missense_Mutation p.G757R 0.58 tolerated(0.26) benign(0.17) TCGA-D3-A2JE-06 19 57286322 57286322 G A ZIM2 Missense_Mutation p.L440F 0.46 tolerated(0.37) possibly_damaging(0.794) TCGA-D3-A2JE-06 19 57839250 57839250 C T ZNF543 Silent p.G140G 0.50 TCGA-D3-A2JE-06 19 57839251 57839251 C T ZNF543 Missense_Mutation p.P141S 0.51 tolerated(0.21) benign(0.002) TCGA-D3-A2JE-06 19 57868053 57868053 C T ZNF304 Silent p.I272I 0.41 TCGA-D3-A2JE-06 19 6772870 6772870 C T VAV1 Missense_Mutation p.P18S 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 19 9061937 9061937 C T MUC16 Silent p.G8503G 0.34 TCGA-D3-A2JE-06 1 110655089 110655089 C T UBL4B 5'UTR 0.24 TCGA-D3-A2JE-06 1 111146385 111146385 G A KCNA2 Silent p.I340I 0.57 TCGA-D3-A2JE-06 1 118535227 118535227 G A SPAG17 Silent p.G1741G 0.32 TCGA-D3-A2JE-06 1 120306943 120306944 - T HMGCS2 Frame_Shift_Ins p.S138Vfs*19 0.20 TCGA-D3-A2JE-06 1 1248272 1248272 C T CPSF3L Missense_Mutation p.G403S 0.60 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JE-06 1 14106090 14106090 T C PRDM2 Silent p.C600C 0.25 TCGA-D3-A2JE-06 1 146683997 146683997 C T FMO5 Silent p.G198G 0.14 TCGA-D3-A2JE-06 1 147400688 147400688 C T GPR89B Silent p.S13S 0.28 TCGA-D3-A2JE-06 1 151789714 151789714 G A RORC Missense_Mutation p.S38L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 1 152278894 152278894 C T FLG Missense_Mutation p.G2823E 0.14 benign(0.366) TCGA-D3-A2JE-06 1 152284885 152284885 C T FLG Missense_Mutation p.R826Q 0.31 benign(0.177) TCGA-D3-A2JE-06 1 152328257 152328257 C T FLG2 Missense_Mutation p.G669R 0.33 unknown(0) TCGA-D3-A2JE-06 1 152748926 152748926 C G LCE1F Missense_Mutation p.P27A 0.31 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JE-06 1 152748962 152748962 C T LCE1F Missense_Mutation p.P39S 0.38 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JE-06 1 153005161 153005161 G A SPRR1B 3'UTR 0.55 TCGA-D3-A2JE-06 1 161017464 161017464 G A ARHGAP30 3'UTR 0.26 TCGA-D3-A2JE-06 1 167064152 167064152 G A DUSP27 Silent p.V22V 0.33 TCGA-D3-A2JE-06 1 17046577 17046577 A C ESPNP RNA 0.06 TCGA-D3-A2JE-06 1 179631367 179631367 T C TDRD5 Silent p.T817T 0.16 TCGA-D3-A2JE-06 1 180849230 180849230 C T XPR1 Silent p.F609F 0.34 TCGA-D3-A2JE-06 1 193202191 193202191 G T CDC73 Missense_Mutation p.R408I 0.20 deleterious(0.01) possibly_damaging(0.571) TCGA-D3-A2JE-06 1 200014679 200014679 C T NR5A2 Nonsense_Mutation p.Q144* 0.29 TCGA-D3-A2JE-06 1 201356245 201356245 C T LAD1 Missense_Mutation p.D82N 0.67 tolerated(0.1) benign(0.024) TCGA-D3-A2JE-06 1 202894159 202894159 G A KLHL12 Silent p.F44F 0.46 TCGA-D3-A2JE-06 1 205275316 205275316 C T NUAK2 Silent p.E230E 0.53 TCGA-D3-A2JE-06 1 205290696 205290696 G - NUAK2 Frame_Shift_Del p.R21Gfs*7 0.28 TCGA-D3-A2JE-06 1 206664990 206664990 C T IKBKE Silent p.F581F 0.31 TCGA-D3-A2JE-06 1 208219289 208219289 C T PLXNA2 Silent p.P1143P 0.04 TCGA-D3-A2JE-06 1 211263949 211263949 C T KCNH1 Missense_Mutation p.D132N 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JE-06 1 226555217 226555217 G A PARP1 Silent p.I790I 0.19 TCGA-D3-A2JE-06 1 245849652 245849652 G A KIF26B Missense_Mutation p.E1123K 0.22 tolerated(0.13) unknown(0) TCGA-D3-A2JE-06 1 248309135 248309135 G A OR2M5 Missense_Mutation p.G229E 0.18 tolerated(1) benign(0.073) TCGA-D3-A2JE-06 1 248436952 248436952 C T OR2T33 Silent p.T55T 0.16 TCGA-D3-A2JE-06 1 2939184 2939184 G A ACTRT2 Missense_Mutation p.D312N 0.56 tolerated(0.17) possibly_damaging(0.593) TCGA-D3-A2JE-06 1 34684417 34684417 G A C1orf94 3'UTR 0.57 TCGA-D3-A2JE-06 1 38447403 38447403 C T SF3A3 Silent p.K183K 0.05 TCGA-D3-A2JE-06 1 57480853 57480853 G A DAB1 Missense_Mutation p.P383S 0.48 tolerated(0.26) benign(0.008) TCGA-D3-A2JE-06 1 62672511 62672511 G A L1TD1 Missense_Mutation p.E71K 0.67 deleterious(0.01) unknown(0) TCGA-D3-A2JE-06 1 94543274 94543274 G A ABCA4 Missense_Mutation p.T509I 0.34 tolerated(0.55) benign(0.001) TCGA-D3-A2JE-06 20 14307953 14307953 T C FLRT3 Missense_Mutation p.N67S 0.57 tolerated(0.12) possibly_damaging(0.638) TCGA-D3-A2JE-06 20 1616866 1616866 C T SIRPG Missense_Mutation p.R239H 0.13 tolerated(0.05) benign(0.067) TCGA-D3-A2JE-06 20 19701833 19701833 G A SLC24A3 3'UTR 0.23 TCGA-D3-A2JE-06 20 24565624 24565624 C A SYNDIG1 Missense_Mutation p.H205N 0.06 deleterious(0.02) probably_damaging(0.974) TCGA-D3-A2JE-06 20 30904090 30904090 C T KIF3B Silent p.L492L 0.38 TCGA-D3-A2JE-06 20 3145170 3145170 G A LZTS3 Missense_Mutation p.P651L 0.49 tolerated(0.12) benign(0.004) TCGA-D3-A2JE-06 20 41306516 41306516 G A PTPRT Silent p.T381T 0.53 TCGA-D3-A2JE-06 20 45607179 45607179 A G EYA2 Intron 0.28 TCGA-D3-A2JE-06 20 54824049 54824049 C T MC3R Silent p.I50I 0.49 TCGA-D3-A2JE-06 20 62323137 62323137 C T RTEL1 Missense_Mutation p.P891S 0.25 tolerated(0.54) benign(0.005) TCGA-D3-A2JE-06 20 9433991 9433991 C T PLCB4 Intron 0.49 TCGA-D3-A2JE-06 20 9546815 9546827 AGCTCAGGTAGGA - PAK7 Frame_Shift_Del p.S399Pfs*75 0.25 TCGA-D3-A2JE-06 21 10862823 10862823 C T IGHV1OR21-1 Missense_Mutation p.S40F 0.08 deleterious(0.02) possibly_damaging(0.7) TCGA-D3-A2JE-06 21 10908889 10908889 G A TPTE Missense_Mutation p.P486S 0.10 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JE-06 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.14 deleterious(0.03) possibly_damaging(0.883) TCGA-D3-A2JE-06 21 18937831 18937831 C T CXADR Missense_Mutation p.P307S 0.58 deleterious(0.05) possibly_damaging(0.831) TCGA-D3-A2JE-06 21 34823089 34823089 A T TMEM50B 3'UTR 0.49 TCGA-D3-A2JE-06 21 41137517 41137517 G A IGSF5 Silent p.K52K 0.15 TCGA-D3-A2JE-06 21 45949837 45949837 C T TSPEAR Missense_Mutation p.G212R 0.26 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JE-06 21 46705666 46705666 G A POFUT2 Silent p.P103P 0.17 TCGA-D3-A2JE-06 22 22277324 22277324 C T PPM1F 3'UTR 0.50 TCGA-D3-A2JE-06 22 25264794 25264794 C T SGSM1 Silent p.I421I 0.29 TCGA-D3-A2JE-06 22 26228958 26228958 C T MYO18B Silent p.P1018P 0.43 TCGA-D3-A2JE-06 22 30741049 30741049 G T SF3A1 Missense_Mutation p.A175D 0.45 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JE-06 22 30741050 30741050 C G SF3A1 Missense_Mutation p.A175P 0.44 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JE-06 22 42456343 42456343 A G NAGA Silent p.P392P 0.44 TCGA-D3-A2JE-06 22 45244933 45244933 G A ARHGAP8 Silent p.G412G 0.37 TCGA-D3-A2JE-06 22 50906032 50906032 G A SBF1 Missense_Mutation p.P123S 0.33 tolerated(0.44) benign(0.002) TCGA-D3-A2JE-06 2 101650217 101650217 G A TBC1D8 Missense_Mutation p.A521V 0.07 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JE-06 2 107459575 107459575 G A ST6GAL2 Nonsense_Mutation p.Q287* 0.67 TCGA-D3-A2JE-06 2 140992383 140992383 G A LRP1B Missense_Mutation p.S4544F 0.29 benign(0) TCGA-D3-A2JE-06 2 141113939 141113939 C T LRP1B Silent p.Q3834Q 0.23 TCGA-D3-A2JE-06 2 141771244 141771244 G A LRP1B Missense_Mutation p.T754I 0.56 possibly_damaging(0.507) TCGA-D3-A2JE-06 2 158406844 158406844 C T ACVR1C Missense_Mutation p.G202E 0.61 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 2 160729038 160729055 GGGCTTGGCAGAATCGTT - LY75-CD302 In_Frame_Del p.E675_L681delinsV 0.10 TCGA-D3-A2JE-06 2 168104508 168104508 G A XIRP2 Silent p.K2202K 0.67 TCGA-D3-A2JE-06 2 169938115 169938115 C T DHRS9 Silent p.L8L 0.68 TCGA-D3-A2JE-06 2 170093638 170093638 C T LRP2 Missense_Mutation p.G1556R 0.14 probably_damaging(1) TCGA-D3-A2JE-06 2 179451905 179451905 C T TTN Missense_Mutation p.E21345K 0.69 TCGA-D3-A2JE-06 2 179531984 179531984 G A TTN Missense_Mutation p.P11926S 0.44 TCGA-D3-A2JE-06 2 179534946 179534946 T G TTN Missense_Mutation p.K11795N 0.30 TCGA-D3-A2JE-06 2 179594292 179594292 T C TTN Silent p.E6197E 0.26 TCGA-D3-A2JE-06 2 179640522 179640522 C G TTN Missense_Mutation p.K2023N 0.19 TCGA-D3-A2JE-06 2 179664255 179664255 G A TTN Silent p.S291S 0.67 TCGA-D3-A2JE-06 2 182402791 182402791 G A CERKL 3'Flank 0.64 TCGA-D3-A2JE-06 2 185800982 185800982 G A ZNF804A Missense_Mutation p.D287N 0.19 tolerated(0.11) possibly_damaging(0.516) TCGA-D3-A2JE-06 2 191524231 191524231 C T NAB1 Missense_Mutation p.S110F 0.22 tolerated(0.09) benign(0.188) TCGA-D3-A2JE-06 2 207171852 207171852 C T ZDBF2 Missense_Mutation p.P867L 0.65 tolerated(0.09) probably_damaging(0.927) TCGA-D3-A2JE-06 2 213403260 213403260 G A ERBB4 5'UTR 0.27 TCGA-D3-A2JE-06 2 215884385 215884385 C T ABCA12 Missense_Mutation p.E475K 0.17 tolerated(0.23) benign(0.002) TCGA-D3-A2JE-06 2 219289068 219289068 C T VIL1 Silent p.I48I 0.21 TCGA-D3-A2JE-06 2 219563976 219563976 C T STK36 Missense_Mutation p.L1237F 0.79 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JE-06 2 220100269 220100269 G A ANKZF1 Missense_Mutation p.E589K 0.64 tolerated(0.11) possibly_damaging(0.501) TCGA-D3-A2JE-06 2 228882158 228882158 C T SPHKAP Missense_Mutation p.E1138K 0.70 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 2 228882159 228882159 C T SPHKAP Missense_Mutation p.M1137I 0.72 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JE-06 2 28561316 28561316 G A BRE Splice_Site 0.84 TCGA-D3-A2JE-06 2 74320794 74320794 G A TET3 Splice_Site p.X954_splice 0.83 TCGA-D3-A2JE-06 2 77745650 77745650 G A LRRTM4 Missense_Mutation p.R449C 0.28 tolerated(0.18) probably_damaging(0.98) TCGA-D3-A2JE-06 3 10370738 10370738 G A ATP2B2 Silent p.I1164I 0.34 TCGA-D3-A2JE-06 3 108682307 108682307 T A MORC1 Missense_Mutation p.K918M 0.30 deleterious(0.01) possibly_damaging(0.711) TCGA-D3-A2JE-06 3 112724729 112724729 C T C3orf17 Missense_Mutation p.R453K 0.64 tolerated(0.15) benign(0.019) TCGA-D3-A2JE-06 3 11301192 11301192 C T HRH1 Silent p.L157L 0.29 TCGA-D3-A2JE-06 3 120876450 120876450 C T STXBP5L Missense_Mutation p.P285S 0.28 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JE-06 3 122003414 122003414 G A CASR Silent p.E881E 0.27 TCGA-D3-A2JE-06 3 12857869 12857885 GCAGGCATCATCTTCTC - CAND2 Splice_Site p.X481_splice 0.13 TCGA-D3-A2JE-06 3 132213104 132213104 G C DNAJC13 Splice_Site p.X1314_splice 0.20 TCGA-D3-A2JE-06 3 139062808 139062808 G A MRPS22 5'UTR 0.22 TCGA-D3-A2JE-06 3 148714203 148714203 G A GYG1 Silent p.K86K 0.54 TCGA-D3-A2JE-06 3 148896338 148896338 C T CP Silent p.L914L 0.31 TCGA-D3-A2JE-06 3 164786524 164786524 G A SI Missense_Mutation p.R157C 0.24 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JE-06 3 168833264 168833264 C T MECOM Missense_Mutation p.G676E 0.46 tolerated(1) benign(0.001) TCGA-D3-A2JE-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.64 deleterious(0.05) benign(0.012) TCGA-D3-A2JE-06 3 38103775 38103775 C T DLEC1 Silent p.F263F 0.31 TCGA-D3-A2JE-06 3 38674692 38674692 G A SCN5A Missense_Mutation p.S36L 0.14 tolerated(0.11) benign(0.004) TCGA-D3-A2JE-06 3 38991720 38991720 C T SCN11A Missense_Mutation p.G45E 0.24 tolerated(1) benign(0.076) TCGA-D3-A2JE-06 3 42916512 42916512 C T CYP8B1 Missense_Mutation p.G266E 0.70 tolerated(0.07) benign(0.067) TCGA-D3-A2JE-06 3 47143021 47143021 C A SETD2 Missense_Mutation p.V1648F 0.23 deleterious(0) benign(0.059) TCGA-D3-A2JE-06 3 47162890 47162890 G A SETD2 Missense_Mutation p.P1079L 0.32 deleterious_low_confidence(0.05) benign(0.075) TCGA-D3-A2JE-06 3 48613326 48613326 G A COL7A1 Missense_Mutation p.R1944W 0.20 unknown(0) TCGA-D3-A2JE-06 3 50415212 50415212 C T CACNA2D2 Missense_Mutation p.G501E 0.49 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JE-06 3 8574429 8574429 C T LMCD1 Silent p.L17L 0.25 TCGA-D3-A2JE-06 3 97311529 97311529 G A EPHA6 Silent p.Q820Q 0.35 TCGA-D3-A2JE-06 3 99514344 99514344 G A COL8A1 Silent p.G533G 0.60 TCGA-D3-A2JE-06 3 99890708 99890708 G A CMSS1 Missense_Mutation p.G182S 0.19 tolerated(0.66) benign(0.002) TCGA-D3-A2JE-06 4 100126198 100126198 G A ADH6 Silent p.I329I 0.42 TCGA-D3-A2JE-06 4 100260871 100260871 G A ADH1C Silent p.G322G 0.41 TCGA-D3-A2JE-06 4 101108828 101108828 C T DDIT4L 3'UTR 0.33 TCGA-D3-A2JE-06 4 145636550 145636550 G A HHIP Missense_Mutation p.G549D 0.41 tolerated(0.12) benign(0.351) TCGA-D3-A2JE-06 4 156274382 156274383 - T MAP9 Frame_Shift_Ins p.N497Kfs*6 0.17 TCGA-D3-A2JE-06 4 166935656 166935656 G A TLL1 Missense_Mutation p.R329Q 0.23 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JE-06 4 166986875 166986875 C T TLL1 Missense_Mutation p.S683F 0.35 deleterious(0) possibly_damaging(0.887) TCGA-D3-A2JE-06 4 177190101 177190101 C T ASB5 Silent p.R53R 0.40 TCGA-D3-A2JE-06 4 177650885 177650885 C T VEGFC Missense_Mutation p.D55N 0.44 tolerated(0.07) possibly_damaging(0.615) TCGA-D3-A2JE-06 4 183710282 183710282 C T TENM3 Nonsense_Mutation p.R1781* 0.48 TCGA-D3-A2JE-06 4 47593286 47593286 C T ATP10D Missense_Mutation p.S1390F 0.45 tolerated_low_confidence(0.08) benign(0.003) TCGA-D3-A2JE-06 4 57829744 57829744 G A NOA1 Missense_Mutation p.P657S 0.46 deleterious(0.01) possibly_damaging(0.616) TCGA-D3-A2JE-06 4 68934524 68934524 C T TMPRSS11F Silent p.R189R 0.49 TCGA-D3-A2JE-06 4 69682035 69682035 C T UGT2B10 Nonsense_Mutation p.Q100* 0.42 TCGA-D3-A2JE-06 4 70148315 70148315 C T UGT2B28 Missense_Mutation p.P269S 0.83 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JE-06 4 79391236 79391236 G A FRAS1 Missense_Mutation p.M2454I 0.54 benign(0.003) TCGA-D3-A2JE-06 4 88959629 88959629 C T PKD2 Missense_Mutation p.P357L 0.39 deleterious(0) possibly_damaging(0.801) TCGA-D3-A2JE-06 5 115205741 115205741 G A AP3S1 Silent p.L63L 0.16 TCGA-D3-A2JE-06 5 115348125 115348125 C T AQPEP Missense_Mutation p.R768C 0.59 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A2JE-06 5 126784848 126784848 C T MEGF10 Missense_Mutation p.P972S 0.28 tolerated(0.9) benign(0.001) TCGA-D3-A2JE-06 5 13735295 13735295 C T DNAH5 Silent p.K3902K 0.29 TCGA-D3-A2JE-06 5 140249494 140249494 G A PCDHA11 Missense_Mutation p.R269Q 0.33 tolerated_low_confidence(0.23) benign(0.044) TCGA-D3-A2JE-06 5 140250483 140250483 G A PCDHA11 Missense_Mutation p.D599N 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A2JE-06 5 140264212 140264212 G A PCDHA13 Missense_Mutation p.G787S 0.62 tolerated_low_confidence(0.47) benign(0.001) TCGA-D3-A2JE-06 5 140475855 140475855 C T PCDHB2 Missense_Mutation p.P494L 0.19 deleterious_low_confidence(0.02) benign(0.126) TCGA-D3-A2JE-06 5 140572296 140572296 G A PCDHB10 Silent p.G57G 0.58 TCGA-D3-A2JE-06 5 140580623 140580623 T C PCDHB11 Silent p.L426L 0.05 TCGA-D3-A2JE-06 5 14681657 14681657 C T FAM105B Nonsense_Mutation p.Q137* 0.30 TCGA-D3-A2JE-06 5 150682880 150682880 C T SLC36A3 Silent p.L12L 0.28 TCGA-D3-A2JE-06 5 156536051 156536051 C T HAVCR2 5'UTR 0.29 TCGA-D3-A2JE-06 5 156916128 156916128 C T ADAM19 Silent p.T769T 0.19 TCGA-D3-A2JE-06 5 157075684 157075684 C T SOX30 Silent p.K396K 0.53 TCGA-D3-A2JE-06 5 158750083 158750083 C T IL12B Missense_Mutation p.D115N 0.24 tolerated(0.07) benign(0.385) TCGA-D3-A2JE-06 5 178359232 178359232 C T ZFP2 Silent p.S306S 0.22 TCGA-D3-A2JE-06 5 31317779 31317779 G A CDH6 Splice_Site p.X544_splice 0.31 TCGA-D3-A2JE-06 5 35910145 35910145 G A CAPSL Silent p.I116I 0.27 TCGA-D3-A2JE-06 5 39119112 39119112 A T FYB Nonsense_Mutation p.Y765* 0.20 TCGA-D3-A2JE-06 5 41161907 41161907 C T C6 Missense_Mutation p.S449N 0.23 tolerated(0.11) possibly_damaging(0.899) TCGA-D3-A2JE-06 5 63257367 63257367 G A HTR1A Silent p.A60A 0.34 TCGA-D3-A2JE-06 5 71492457 71492457 G A MAP1B Missense_Mutation p.G1092E 0.51 probably_damaging(0.999) TCGA-D3-A2JE-06 5 74137471 74137471 A T FAM169A Missense_Mutation p.C11S 0.32 tolerated(0.2) benign(0.06) TCGA-D3-A2JE-06 5 9629680 9629680 G A TAS2R1 Silent p.F155F 0.59 TCGA-D3-A2JE-06 6 111665170 111665170 C T REV3L Missense_Mutation p.R2499Q 0.76 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A2JE-06 6 125144427 125144427 G C NKAIN2 3'UTR 0.07 TCGA-D3-A2JE-06 6 130761868 130761868 G A TMEM200A Missense_Mutation p.E101K 0.81 tolerated(0.72) benign(0.037) TCGA-D3-A2JE-06 6 131973708 131973708 C T ENPP3 Missense_Mutation p.R102C 0.77 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 6 13321194 13321194 G A TBC1D7 Silent p.L109L 0.13 TCGA-D3-A2JE-06 6 13978284 13978284 T C RNF182 3'UTR 0.64 TCGA-D3-A2JE-06 6 146126114 146126114 C G FBXO30 Missense_Mutation p.E476D 0.25 tolerated(1) benign(0.012) TCGA-D3-A2JE-06 6 154411105 154411105 G A OPRM1 Silent p.V238V 0.73 TCGA-D3-A2JE-06 6 159670151 159670151 G A FNDC1 Missense_Mutation p.E1591K 0.93 tolerated(0.19) possibly_damaging(0.594) TCGA-D3-A2JE-06 6 161139388 161139388 C T PLG Missense_Mutation p.R284C 0.80 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JE-06 6 161528978 161528978 G C MAP3K4 Missense_Mutation p.G1366R 0.82 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 6 16327639 16327639 G A ATXN1 Silent p.V301V 0.32 TCGA-D3-A2JE-06 6 167453393 167453393 T C FGFR1OP Missense_Mutation p.L376P 0.87 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JE-06 6 27216661 27216661 G A PRSS16 Silent p.Q91Q 0.11 TCGA-D3-A2JE-06 6 27216662 27216662 G A PRSS16 Missense_Mutation p.D92N 0.10 tolerated(0.37) benign(0.017) TCGA-D3-A2JE-06 6 30539327 30539327 G T ABCF1 Silent p.T21T 0.09 TCGA-D3-A2JE-06 6 30539328 30539328 A T ABCF1 Missense_Mutation p.S22C 0.09 deleterious_low_confidence(0.04) benign(0.114) TCGA-D3-A2JE-06 6 32917144 32917144 C T HLA-DMA Missense_Mutation p.E229K 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A2JE-06 6 33139330 33139330 G A COL11A2 Missense_Mutation p.P972S 0.82 possibly_damaging(0.803) TCGA-D3-A2JE-06 6 43163845 43163845 C T CUL9 Silent p.I809I 0.15 TCGA-D3-A2JE-06 6 49754266 49754266 A C PGK2 Missense_Mutation p.L212R 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 6 52957292 52957292 C T FBXO9 Missense_Mutation p.P250L 0.22 deleterious(0.02) benign(0.167) TCGA-D3-A2JE-06 6 86324704 86324704 G A SYNCRIP Missense_Mutation p.R548C 0.81 tolerated(0.13) unknown(0) TCGA-D3-A2JE-06 6 86324705 86324705 G A SYNCRIP Silent p.G547G 0.80 TCGA-D3-A2JE-06 7 100028135 100028135 C T MEPCE Missense_Mutation p.P165L 0.31 deleterious(0.02) possibly_damaging(0.534) TCGA-D3-A2JE-06 7 100349677 100349677 C T ZAN Missense_Mutation p.S650F 0.40 benign(0.02) TCGA-D3-A2JE-06 7 105909756 105909756 A G NAMPT Silent p.T150T 0.20 TCGA-D3-A2JE-06 7 112407413 112407413 G A TMEM168 Missense_Mutation p.R645C 0.39 deleterious(0.01) possibly_damaging(0.707) TCGA-D3-A2JE-06 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.30 TCGA-D3-A2JE-06 7 12692525 12692525 C T SCIN 3'UTR 0.55 TCGA-D3-A2JE-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JE-06 7 142104327 142104327 C T TRBV6-9 Missense_Mutation p.M46I 0.42 tolerated(0.06) benign(0.137) TCGA-D3-A2JE-06 7 143175539 143175539 C T TAS2R41 Missense_Mutation p.P192S 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 7 149190025 149190025 C T ZNF746 Missense_Mutation p.E149K 0.52 deleterious(0) benign(0.218) TCGA-D3-A2JE-06 7 149485969 149485969 T G SSPO RNA 0.51 TCGA-D3-A2JE-06 7 150171698 150171698 G A GIMAP8 Silent p.G427G 0.15 TCGA-D3-A2JE-06 7 150439714 150439714 G A GIMAP5 Missense_Mutation p.D163N 0.53 tolerated(0.07) benign(0.033) TCGA-D3-A2JE-06 7 150501558 150501558 G A TMEM176A Missense_Mutation p.G222R 0.43 tolerated(0.16) benign(0.016) TCGA-D3-A2JE-06 7 151917611 151917611 G A KMT2C Nonsense_Mutation p.R1237* 0.41 TCGA-D3-A2JE-06 7 18975473 18975473 G A HDAC9 Missense_Mutation p.G949R 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 7 19035711 19035711 C T HDAC9 3'Flank 0.38 TCGA-D3-A2JE-06 7 20444476 20444476 G A ITGB8 Nonsense_Mutation p.W638* 0.14 TCGA-D3-A2JE-06 7 21723412 21723412 C T DNAH11 Missense_Mutation p.P1831L 0.37 benign(0.139) TCGA-D3-A2JE-06 7 30701801 30701801 G T CRHR2 Silent p.A270A 0.21 TCGA-D3-A2JE-06 7 38398168 38398168 A C TRGV3 Missense_Mutation p.L100R 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 7 44180562 44180562 C T MYL7 Missense_Mutation p.E39K 0.36 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A2JE-06 7 4955664 4955664 A G MMD2 Missense_Mutation p.F113L 0.47 tolerated(0.07) benign(0.086) TCGA-D3-A2JE-06 7 54617593 54617593 G A VSTM2A Missense_Mutation p.E122K 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JE-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.57 TCGA-D3-A2JE-06 7 70251015 70251015 C T AUTS2 Missense_Mutation p.P767S 0.41 deleterious(0.04) possibly_damaging(0.791) TCGA-D3-A2JE-06 7 72732939 72732939 C T TRIM50 Missense_Mutation p.G203D 0.12 tolerated(0.59) benign(0.056) TCGA-D3-A2JE-06 7 77256691 77256692 TG - PTPN12 Frame_Shift_Del p.V566Efs*11 0.14 TCGA-D3-A2JE-06 7 82585683 82585683 C T PCLO Missense_Mutation p.R1529Q 0.41 unknown(0) TCGA-D3-A2JE-06 7 99091435 99091435 G A ZNF394 Missense_Mutation p.P468L 0.20 deleterious(0.01) possibly_damaging(0.816) TCGA-D3-A2JE-06 8 105260930 105260930 C T RIMS2 Silent p.L1160L 0.40 TCGA-D3-A2JE-06 8 109796494 109796494 G A TMEM74 Silent p.F278F 0.50 TCGA-D3-A2JE-06 8 110477358 110477358 G A PKHD1L1 Missense_Mutation p.R2766K 0.47 tolerated(0.56) benign(0.003) TCGA-D3-A2JE-06 8 110631110 110631110 G A SYBU Nonsense_Mutation p.R130* 0.10 TCGA-D3-A2JE-06 8 123964439 123964439 G A ZHX2 Missense_Mutation p.G230D 0.51 tolerated(0.08) benign(0.075) TCGA-D3-A2JE-06 8 130777992 130777992 C T GSDMC Missense_Mutation p.R151K 0.47 tolerated(0.53) benign(0.245) TCGA-D3-A2JE-06 8 144804024 144804024 G A MAPK15 Missense_Mutation p.G478R 0.05 tolerated(0.06) probably_damaging(0.919) TCGA-D3-A2JE-06 8 42587131 42587131 C T CHRNB3 Silent p.F227F 0.19 TCGA-D3-A2JE-06 8 43159847 43159847 G A RNU6-104P 3'Flank 0.21 TCGA-D3-A2JE-06 8 67012297 67012297 C T DNAJC5B 3'UTR 0.47 TCGA-D3-A2JE-06 8 67590085 67590085 C T C8orf44 Missense_Mutation p.L48F 0.34 deleterious_low_confidence(0.03) probably_damaging(0.934) TCGA-D3-A2JE-06 8 6794369 6794369 C T DEFA4 Missense_Mutation p.R18Q 0.77 tolerated(1) unknown(0) TCGA-D3-A2JE-06 8 73848571 73848571 C T KCNB2 Silent p.T327T 0.58 TCGA-D3-A2JE-06 8 73937110 73937110 C T TERF1 Silent p.S226S 0.53 TCGA-D3-A2JE-06 8 80577083 80577083 G A STMN2 3'UTR 0.10 TCGA-D3-A2JE-06 8 86389465 86389465 G A CA2 Nonsense_Mutation p.W208* 0.47 TCGA-D3-A2JE-06 8 99441753 99441753 G A KCNS2 3'UTR 0.29 TCGA-D3-A2JE-06 9 100139224 100139224 C T CCDC180 3'UTR 0.33 TCGA-D3-A2JE-06 9 104433333 104433333 G A GRIN3A Missense_Mutation p.S454F 0.34 tolerated(0.12) benign(0.211) TCGA-D3-A2JE-06 9 117846742 117846742 G A TNC Missense_Mutation p.P626L 0.55 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JE-06 9 118973990 118973990 A T PAPPA Missense_Mutation p.H566L 0.23 deleterious(0) possibly_damaging(0.537) TCGA-D3-A2JE-06 9 125424247 125424247 T G OR1L1 Missense_Mutation p.F85V 0.03 tolerated(0.5) benign(0.004) TCGA-D3-A2JE-06 9 125424660 125424660 C T OR1L1 Silent p.L222L 0.56 TCGA-D3-A2JE-06 9 126132747 126132747 G A CRB2 Missense_Mutation p.G472E 0.54 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A2JE-06 9 128113087 128113088 TG - GAPVD1 Frame_Shift_Del p.C1198Pfs*3 0.10 TCGA-D3-A2JE-06 9 130428477 130428477 C T STXBP1 Silent p.I232I 0.50 TCGA-D3-A2JE-06 9 131371473 131371473 C T SPTAN1 Silent p.F1556F 0.16 TCGA-D3-A2JE-06 9 139907015 139907015 G A ABCA2 Silent p.V1703V 0.56 TCGA-D3-A2JE-06 9 38413338 38413338 G A IGFBPL1 Missense_Mutation p.P195S 0.32 tolerated(0.14) possibly_damaging(0.822) TCGA-D3-A2JE-06 9 39888070 39888070 C T SPATA31A2 Nonsense_Mutation p.R353* 0.33 TCGA-D3-A2JE-06 9 73477849 73477849 C T TRPM3 Missense_Mutation p.G146E 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 X 100177825 100177825 C T XKRX Silent p.Q187Q 0.55 TCGA-D3-A2JE-06 X 100382627 100382627 A G CENPI Silent p.Q349Q 0.49 TCGA-D3-A2JE-06 X 100601520 100601520 G A TIMM8A Silent p.S87S 0.62 TCGA-D3-A2JE-06 X 101098169 101098169 A C NXF5 5'UTR 0.10 TCGA-D3-A2JE-06 X 101098232 101098232 C T NXF5 5'UTR 0.52 TCGA-D3-A2JE-06 X 10182048 10182048 C T CLCN4 Missense_Mutation p.P635L 0.74 deleterious(0) probably_damaging(1) TCGA-D3-A2JE-06 X 102979074 102979074 G A GLRA4 Silent p.F142F 0.25 TCGA-D3-A2JE-06 X 103359814 103359814 C T ZCCHC18 Missense_Mutation p.R338C 0.15 tolerated_low_confidence(0.15) benign(0.006) TCGA-D3-A2JE-06 X 109693815 109693815 C T RGAG1 5'UTR 0.62 TCGA-D3-A2JE-06 X 110463618 110463618 C T PAK3 Silent p.S562S 0.53 TCGA-D3-A2JE-06 X 112021852 112021852 A G AMOT Silent p.T1066T 0.16 TCGA-D3-A2JE-06 X 117079508 117079508 C T KLHL13 Missense_Mutation p.M46I 0.27 tolerated_low_confidence(0.07) benign(0.019) TCGA-D3-A2JE-06 X 119004610 119004610 T A RNF113A Missense_Mutation p.T323S 0.57 tolerated(0.67) benign(0) TCGA-D3-A2JE-06 X 125685671 125685671 C T DCAF12L1 Silent p.R307R 0.60 TCGA-D3-A2JE-06 X 125685672 125685672 C T DCAF12L1 Missense_Mutation p.R307Q 0.60 tolerated(0.72) benign(0.052) TCGA-D3-A2JE-06 X 12809663 12809663 C T PRPS2 Missense_Mutation p.S16F 0.67 deleterious(0) probably_damaging(0.962) TCGA-D3-A2JE-06 X 132439895 132439895 G A GPC4 Missense_Mutation p.R354C 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JE-06 X 134992322 134992322 G A SAGE1 Silent p.R619R 0.57 TCGA-D3-A2JE-06 X 144329106 144329106 C T SPANXN1 5'UTR 0.57 TCGA-D3-A2JE-06 X 146341223 146341223 C T MIR509-3 RNA 0.59 TCGA-D3-A2JE-06 X 14882808 14882809 - T FANCB Frame_Shift_Ins p.N275Kfs*33 0.19 TCGA-D3-A2JE-06 X 152935996 152935996 G A PNCK Silent p.I399I 0.67 TCGA-D3-A2JE-06 X 153038856 153038856 C T PLXNB3 Silent p.F1049F 0.57 TCGA-D3-A2JE-06 X 1584502 1584502 G A P2RY8 Missense_Mutation p.T317I 0.22 deleterious(0.05) benign(0.032) TCGA-D3-A2JE-06 X 18192306 18192306 C T BEND2 Missense_Mutation p.G609S 0.64 tolerated(0.25) benign(0.008) TCGA-D3-A2JE-06 X 18192307 18192307 C T BEND2 Silent p.R608R 0.64 TCGA-D3-A2JE-06 X 18274999 18274999 G C SCML2 Missense_Mutation p.H475Q 0.08 tolerated(0.29) benign(0.002) TCGA-D3-A2JE-06 X 18638084 18638084 A G CDKL5 Missense_Mutation p.T792A 0.71 tolerated_low_confidence(0.05) benign(0.003) TCGA-D3-A2JE-06 X 21674301 21674301 C T KLHL34 Missense_Mutation p.E536K 0.63 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JE-06 X 24075645 24075645 C T EIF2S3 Missense_Mutation p.L81F 0.05 deleterious(0.02) possibly_damaging(0.739) TCGA-D3-A2JE-06 X 24552192 24552192 T A PDK3 Intron 0.60 TCGA-D3-A2JE-06 X 26211935 26211935 C T MAGEB6 5'UTR 0.58 TCGA-D3-A2JE-06 X 3239259 3239259 C T MXRA5 Silent p.K1489K 0.27 TCGA-D3-A2JE-06 X 37029285 37029285 G A FAM47C Silent p.V934V 0.26 TCGA-D3-A2JE-06 X 46502786 46502786 C T SLC9A7 Missense_Mutation p.D500N 0.70 tolerated(0.81) benign(0.048) TCGA-D3-A2JE-06 X 47446149 47446149 C T TIMP1 3'UTR 0.57 TCGA-D3-A2JE-06 X 57619507 57619507 C T ZXDB Silent p.G342G 0.51 TCGA-D3-A2JE-06 X 64738014 64738014 C T LAS1L Missense_Mutation p.D594N 0.51 tolerated(0.1) benign(0.075) TCGA-D3-A2JE-06 X 67941551 67941551 C T STARD8 Missense_Mutation p.H808Y 0.29 deleterious(0) benign(0.386) TCGA-D3-A2JE-06 X 68383003 68383003 T C PJA1 Missense_Mutation p.R27G 0.10 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JE-06 X 70352047 70352047 C T MED12 Missense_Mutation p.P1415L 0.49 benign(0.028) TCGA-D3-A2JE-06 X 70472509 70472509 C T ZMYM3 Silent p.L199L 0.40 TCGA-D3-A2JE-06 X 7177568 7177568 C T STS Silent p.I192I 0.72 TCGA-D3-A2JE-06 X 73960983 73960983 G A KIAA2022 Nonsense_Mutation p.Q1137* 0.42 TCGA-D3-A2JE-06 X 76855978 76855978 T G ATRX Missense_Mutation p.Q1874H 0.18 probably_damaging(0.995) TCGA-D3-A2JE-06 X 99839919 99839919 C T TNMD 5'UTR 0.64 TCGA-D3-A2JF-06 10 102048079 102048079 C T PKD2L1 3'UTR 0.51 TCGA-D3-A2JF-06 10 102795757 102795757 C A SFXN3 Intron 0.48 TCGA-D3-A2JF-06 10 102795758 102795758 A T SFXN3 Splice_Site p.X115_splice 0.48 TCGA-D3-A2JF-06 10 103371486 103371486 G A FBXW4 Silent p.L340L 0.31 TCGA-D3-A2JF-06 10 103908398 103908398 C T PPRC1 Missense_Mutation p.R1522C 0.25 deleterious(0) possibly_damaging(0.689) TCGA-D3-A2JF-06 10 103912053 103912053 C T NOLC1 5'UTR 0.39 TCGA-D3-A2JF-06 10 103921621 103921621 G A NOLC1 Missense_Mutation p.R627K 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A2JF-06 10 103921622 103921622 G A NOLC1 Silent p.R627R 0.12 TCGA-D3-A2JF-06 10 104172317 104172317 G A PSD Silent p.S523S 0.48 TCGA-D3-A2JF-06 10 1041878 1041878 C T GTPBP4 Missense_Mutation p.P77S 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 10 105048248 105048248 C T INA Missense_Mutation p.S441F 0.17 deleterious(0.03) benign(0.047) TCGA-D3-A2JF-06 10 105350125 105350125 C T NEURL1 Missense_Mutation p.S574F 0.15 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A2JF-06 10 106865211 106865211 C T SORCS3 Missense_Mutation p.P384S 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JF-06 10 106918692 106918692 C T SORCS3 Missense_Mutation p.P558S 0.15 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JF-06 10 106982982 106982982 T A SORCS3 Missense_Mutation p.F948Y 0.44 tolerated(1) benign(0.077) TCGA-D3-A2JF-06 10 111637758 111637758 C T XPNPEP1 Missense_Mutation p.R414K 0.37 tolerated(0.88) benign(0.019) TCGA-D3-A2JF-06 10 111860397 111860397 C T ADD3 5'UTR 0.38 TCGA-D3-A2JF-06 10 114053547 114053547 G A TECTB Missense_Mutation p.E179K 0.32 tolerated(0.36) benign(0.419) TCGA-D3-A2JF-06 10 117308974 117308974 C T ATRNL1 Silent p.F1241F 0.20 TCGA-D3-A2JF-06 10 117884912 117884912 C G GFRA1 Missense_Mutation p.R197P 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 10 118236677 118236677 G A PNLIPRP3 3'UTR 0.24 TCGA-D3-A2JF-06 10 119014871 119014871 G C SLC18A2 Missense_Mutation p.D262H 0.50 deleterious(0) probably_damaging(0.962) TCGA-D3-A2JF-06 10 121140380 121140380 C T GRK5 Missense_Mutation p.R68W 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 10 121565915 121565915 C T INPP5F Missense_Mutation p.R455C 0.29 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JF-06 10 121658272 121658272 C T SEC23IP Missense_Mutation p.S166L 0.25 tolerated(0.11) benign(0.002) TCGA-D3-A2JF-06 10 123243278 123243278 G A FGFR2 Silent p.S746S 0.40 TCGA-D3-A2JF-06 10 123845439 123845439 G A TACC2 Missense_Mutation p.G1142R 0.29 benign(0.051) TCGA-D3-A2JF-06 10 123971130 123971130 C T TACC2 Missense_Mutation p.S2397F 0.16 probably_damaging(0.999) TCGA-D3-A2JF-06 10 124266255 124266255 G A HTRA1 Missense_Mutation p.G276R 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 10 124402817 124402817 C T DMBT1 Missense_Mutation p.S2382L 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-D3-A2JF-06 10 124755640 124755640 G A IKZF5 Silent p.S62S 0.23 TCGA-D3-A2JF-06 10 125805406 125805406 G A CHST15 Missense_Mutation p.S108L 0.28 deleterious(0.04) benign(0.075) TCGA-D3-A2JF-06 10 12940351 12940351 G A CCDC3 3'UTR 0.30 TCGA-D3-A2JF-06 10 131565063 131565063 C T MGMT Silent p.L173L 0.38 TCGA-D3-A2JF-06 10 134158130 134158130 C T LRRC27 Missense_Mutation p.L177F 0.47 tolerated(1) benign(0.006) TCGA-D3-A2JF-06 10 135010603 135010603 G A KNDC1 Silent p.R592R 0.17 TCGA-D3-A2JF-06 10 15255960 15255960 G A FAM171A1 Nonsense_Mutation p.R543* 0.15 TCGA-D3-A2JF-06 10 18803289 18803289 C T CACNB2 Silent p.F265F 0.45 TCGA-D3-A2JF-06 10 21101732 21101732 G A NEBL Silent p.I828I 0.37 TCGA-D3-A2JF-06 10 21120416 21120416 C T NEBL Missense_Mutation p.E516K 0.24 tolerated(0.63) benign(0.083) TCGA-D3-A2JF-06 10 25314242 25314242 C T THNSL1 Missense_Mutation p.S697L 0.48 tolerated(0.05) possibly_damaging(0.835) TCGA-D3-A2JF-06 10 26822398 26822398 G A APBB1IP Missense_Mutation p.E282K 0.27 tolerated(0.08) benign(0.115) TCGA-D3-A2JF-06 10 27536351 27536351 G T RP11-85G18.6 Intron 0.29 TCGA-D3-A2JF-06 10 30986400 30986400 C T SVILP1 RNA 0.13 TCGA-D3-A2JF-06 10 31810812 31810812 G A ZEB1 Missense_Mutation p.S851N 0.49 tolerated(0.21) benign(0.008) TCGA-D3-A2JF-06 10 31816112 31816112 G A ZEB1 Missense_Mutation p.E1100K 0.29 tolerated_low_confidence(0.83) benign(0) TCGA-D3-A2JF-06 10 32143022 32143022 A G ARHGAP12 Missense_Mutation p.L354S 0.36 deleterious(0) benign(0.403) TCGA-D3-A2JF-06 10 33486588 33486588 G A NRP1 Silent p.T638T 0.28 TCGA-D3-A2JF-06 10 35500407 35500407 G A CREM Intron 0.19 TCGA-D3-A2JF-06 10 44868716 44868716 C T CXCL12 3'Flank 0.23 TCGA-D3-A2JF-06 10 48389390 48389390 G A RBP3 Silent p.F496F 0.54 TCGA-D3-A2JF-06 10 48390254 48390254 C T RBP3 Silent p.T208T 0.33 TCGA-D3-A2JF-06 10 49395268 49395268 G A FRMPD2 Missense_Mutation p.L745F 0.30 tolerated(0.12) benign(0.025) TCGA-D3-A2JF-06 10 49448473 49448473 C T FRMPD2 Silent p.R210R 0.48 TCGA-D3-A2JF-06 10 50227719 50227719 G A VSTM4 Silent p.I313I 0.25 TCGA-D3-A2JF-06 10 50315832 50315832 C T VSTM4 Silent p.G88G 0.18 TCGA-D3-A2JF-06 10 50531474 50531474 G A C10orf71 Missense_Mutation p.G295E 0.44 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 10 50594748 50594748 C T DRGX Missense_Mutation p.E136K 0.32 tolerated(0.18) benign(0.013) TCGA-D3-A2JF-06 10 50943163 50943163 C T OGDHL 3'UTR 0.45 TCGA-D3-A2JF-06 10 50945839 50945839 C T OGDHL Missense_Mutation p.M861I 0.40 deleterious(0.02) benign(0.02) TCGA-D3-A2JF-06 10 52573626 52573626 G A A1CF Silent p.L446L 0.53 TCGA-D3-A2JF-06 10 5498852 5498852 G A NET1 Missense_Mutation p.M562I 0.20 tolerated_low_confidence(0.45) benign(0) TCGA-D3-A2JF-06 10 55582005 55582005 G A PCDH15 Silent p.C1829C 0.25 TCGA-D3-A2JF-06 10 61022398 61022398 C T FAM13C Silent p.K344K 0.15 TCGA-D3-A2JF-06 10 61028352 61028352 C T FAM13C Silent p.R301R 0.55 TCGA-D3-A2JF-06 10 61443904 61443904 C T SLC16A9 Missense_Mutation p.G49E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 10 61829465 61829465 C T ANK3 Missense_Mutation p.G3725E 0.43 probably_damaging(0.998) TCGA-D3-A2JF-06 10 61831288 61831288 G A ANK3 Silent p.I3117I 0.37 TCGA-D3-A2JF-06 10 61835477 61835477 G A ANK3 Missense_Mutation p.S1721F 0.06 probably_damaging(0.979) TCGA-D3-A2JF-06 10 61846503 61846503 C T ANK3 Missense_Mutation p.G1227E 0.40 possibly_damaging(0.709) TCGA-D3-A2JF-06 10 61874029 61874029 C T ANK3 Missense_Mutation p.D968N 0.22 probably_damaging(0.965) TCGA-D3-A2JF-06 10 62545509 62545509 C T CDK1 Silent p.I94I 0.46 TCGA-D3-A2JF-06 10 64136348 64136348 G T ZNF365 Missense_Mutation p.M132I 0.19 tolerated(0.22) benign(0.007) TCGA-D3-A2JF-06 10 64968147 64968147 G A JMJD1C Silent p.F1094F 0.22 TCGA-D3-A2JF-06 10 6533648 6533648 C T PRKCQ Missense_Mutation p.D263N 0.45 deleterious(0) benign(0.374) TCGA-D3-A2JF-06 10 69666591 69666591 C T SIRT1 Silent p.F329F 0.57 TCGA-D3-A2JF-06 10 69902756 69902756 G A MYPN Missense_Mutation p.G321E 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A2JF-06 10 70645892 70645892 C T STOX1 Silent p.T780T 0.24 TCGA-D3-A2JF-06 10 71255444 71255444 A G TSPAN15 Missense_Mutation p.K151R 0.12 tolerated(0.19) benign(0.007) TCGA-D3-A2JF-06 10 7262487 7262487 G A SFMBT2 Nonsense_Mutation p.R406* 0.19 TCGA-D3-A2JF-06 10 74700993 74700993 G A PLA2G12B Nonsense_Mutation p.R134* 0.41 TCGA-D3-A2JF-06 10 75037036 75037036 C T TTC18 Missense_Mutation p.E898K 0.15 tolerated(0.59) benign(0.188) TCGA-D3-A2JF-06 10 82126470 82126470 G A DYDC2 Silent p.T113T 0.20 TCGA-D3-A2JF-06 10 92663023 92663023 T G RPP30 3'UTR 0.43 TCGA-D3-A2JF-06 10 95372905 95372905 G A PDE6C Silent p.G141G 0.22 TCGA-D3-A2JF-06 10 95987060 95987060 C T PLCE1 Intron 0.21 TCGA-D3-A2JF-06 10 96454742 96454742 C T CYP2C18 Missense_Mutation p.H184Y 0.19 tolerated(0.07) benign(0.016) TCGA-D3-A2JF-06 10 97759960 97759960 A G CC2D2B 5'UTR 0.27 TCGA-D3-A2JF-06 10 98182396 98182396 C T TLL2 Missense_Mutation p.E243K 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A2JF-06 10 98825813 98825813 G A SLIT1 Silent p.I148I 0.19 TCGA-D3-A2JF-06 10 99148129 99148129 C T RRP12 Silent p.K299K 0.19 TCGA-D3-A2JF-06 10 99161087 99161087 C T RRP12 5'UTR 0.32 TCGA-D3-A2JF-06 11 102819814 102819814 G A MMP13 Missense_Mutation p.P331S 0.62 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 11 106681137 106681137 G A GUCY1A2 Missense_Mutation p.P425L 0.65 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JF-06 11 111591308 111591308 C T SIK2 Silent p.S534S 0.53 TCGA-D3-A2JF-06 11 113073115 113073115 G A NCAM1 Missense_Mutation p.D82N 0.41 tolerated(0.21) benign(0.003) TCGA-D3-A2JF-06 11 113700008 113700008 G A USP28 Missense_Mutation p.R324C 0.64 deleterious(0) possibly_damaging(0.766) TCGA-D3-A2JF-06 11 116729104 116729104 G A SIK3 Missense_Mutation p.S920L 0.60 deleterious_low_confidence(0) benign(0.007) TCGA-D3-A2JF-06 11 117864084 117864084 G A IL10RA Missense_Mutation p.E166K 0.25 tolerated(0.11) benign(0.057) TCGA-D3-A2JF-06 11 118499023 118499023 G A PHLDB1 Nonsense_Mutation p.W495* 0.71 TCGA-D3-A2JF-06 11 120336015 120336015 C T ARHGEF12 Silent p.L895L 0.55 TCGA-D3-A2JF-06 11 120976657 120976657 C T TECTA Missense_Mutation p.P61L 0.54 tolerated(0.06) benign(0.024) TCGA-D3-A2JF-06 11 1213378 1213378 G A MUC5AC RNA 0.04 TCGA-D3-A2JF-06 11 121391473 121391473 C T SORL1 Missense_Mutation p.S440L 0.66 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 11 121474942 121474942 G T SORL1 Missense_Mutation p.Q1520H 0.50 tolerated(0.09) benign(0.279) TCGA-D3-A2JF-06 11 123894387 123894387 C T OR10G9 Missense_Mutation p.S223F 0.66 deleterious(0) probably_damaging(0.945) TCGA-D3-A2JF-06 11 124310956 124310956 A C OR8B8 Missense_Mutation p.V9G 0.51 deleterious_low_confidence(0) benign(0.027) TCGA-D3-A2JF-06 11 124744069 124744069 C T ROBO3 Nonsense_Mutation p.R630* 0.57 TCGA-D3-A2JF-06 11 129306816 129306816 G A BARX2 Missense_Mutation p.E120K 0.52 tolerated(0.07) benign(0.337) TCGA-D3-A2JF-06 11 130284446 130284446 C T ADAMTS8 Missense_Mutation p.E516K 0.54 tolerated(0.49) benign(0.421) TCGA-D3-A2JF-06 11 130284447 130284447 C T ADAMTS8 Silent p.E515E 0.54 TCGA-D3-A2JF-06 11 132527115 132527115 G A OPCML Silent p.I89I 0.61 TCGA-D3-A2JF-06 11 13393715 13393715 C T ARNTL Nonsense_Mutation p.R275* 0.24 TCGA-D3-A2JF-06 11 14287092 14287092 G A RP11-21L19.1 Intron 0.28 TCGA-D3-A2JF-06 11 1501680 1501680 C T MOB2 Missense_Mutation p.S103N 0.26 tolerated(0.14) probably_damaging(1) TCGA-D3-A2JF-06 11 17483288 17483288 C G ABCC8 Missense_Mutation p.V222L 0.29 deleterious(0.01) benign(0.399) TCGA-D3-A2JF-06 11 17531364 17531364 G A USH1C Missense_Mutation p.P518S 0.40 tolerated_low_confidence(0.22) benign(0.052) TCGA-D3-A2JF-06 11 18159571 18159571 C T MRGPRX3 Silent p.F274F 0.33 TCGA-D3-A2JF-06 11 1908751 1908751 G A LSP1 Silent p.G454G 0.42 TCGA-D3-A2JF-06 11 19206523 19206523 T A CSRP3 Nonsense_Mutation p.K162* 0.34 TCGA-D3-A2JF-06 11 20658840 20658840 G A SLC6A5 Missense_Mutation p.M620I 0.23 tolerated(0.28) benign(0.065) TCGA-D3-A2JF-06 11 26677682 26677682 G T ANO3 Nonsense_Mutation p.G863* 0.27 TCGA-D3-A2JF-06 11 26692740 26692740 C T SLC5A12 Missense_Mutation p.G589E 0.44 tolerated(0.09) benign(0.025) TCGA-D3-A2JF-06 11 27016039 27016039 C T FIBIN 5'UTR 0.26 TCGA-D3-A2JF-06 11 27077075 27077075 G A BBOX1 Nonsense_Mutation p.W33* 0.26 TCGA-D3-A2JF-06 11 30032768 30032768 G A KCNA4 Silent p.F486F 0.25 TCGA-D3-A2JF-06 11 3249392 3249392 C T MRGPRE Missense_Mutation p.R212Q 0.91 tolerated(0.54) benign(0.007) TCGA-D3-A2JF-06 11 33886334 33886334 G A LMO2 Missense_Mutation p.P93L 0.20 deleterious(0.01) benign(0.189) TCGA-D3-A2JF-06 11 34113478 34113478 C T CAPRIN1 Missense_Mutation p.P527L 0.50 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 11 34119330 34119330 C T CAPRIN1 Intron 0.29 TCGA-D3-A2JF-06 11 34152965 34152965 C T NAT10 Silent p.I469I 0.43 TCGA-D3-A2JF-06 11 35461197 35461197 G A PAMR1 Missense_Mutation p.L377F 0.22 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 11 36595854 36595854 C T RAG1 Missense_Mutation p.P334S 0.56 tolerated_low_confidence(0.07) probably_damaging(0.96) TCGA-D3-A2JF-06 11 36614599 36614599 C T RAG2 Missense_Mutation p.D374N 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A2JF-06 11 3688747 3688747 C A CHRNA10 Missense_Mutation p.V204L 0.44 tolerated(0.94) benign(0.125) TCGA-D3-A2JF-06 11 381804 381804 C T B4GALNT4 3'UTR 0.19 TCGA-D3-A2JF-06 11 3838601 3838601 T A PGAP2 Missense_Mutation p.F62I 0.46 tolerated(0.38) benign(0.004) TCGA-D3-A2JF-06 11 4104196 4104196 A C STIM1 Missense_Mutation p.K408Q 0.19 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A2JF-06 11 44941529 44941529 G A TSPAN18 Silent p.R198R 0.36 TCGA-D3-A2JF-06 11 46568713 46568713 G A AMBRA1 Missense_Mutation p.L110F 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 11 46703605 46703605 G C ARHGAP1 Missense_Mutation p.R149G 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 11 47701578 47701578 C T AGBL2 Missense_Mutation p.G655S 0.21 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JF-06 11 47755678 47755678 G A FNBP4 Nonsense_Mutation p.Q529* 0.43 TCGA-D3-A2JF-06 11 47861898 47861898 G A NUP160 Intron 0.31 TCGA-D3-A2JF-06 11 4790312 4790312 G A OR51F1 Missense_Mutation p.A279V 0.08 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A2JF-06 11 48145287 48145287 G A PTPRJ Missense_Mutation p.E247K 0.42 tolerated(0.74) benign(0.005) TCGA-D3-A2JF-06 11 48238966 48238966 G A OR4B1 Missense_Mutation p.G202E 0.36 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 11 48328650 48328650 G A OR4S1 Silent p.V292V 0.37 TCGA-D3-A2JF-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.26 TCGA-D3-A2JF-06 11 48510793 48510793 G A OR4A47 Missense_Mutation p.G150E 0.33 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D3-A2JF-06 11 49208241 49208241 C T FOLH1 Silent p.G198G 0.08 TCGA-D3-A2JF-06 11 4928683 4928683 C T OR51A7 Silent p.S28S 0.21 TCGA-D3-A2JF-06 11 4935975 4935975 G A OR51G2 Nonsense_Mutation p.R307* 0.63 TCGA-D3-A2JF-06 11 4936406 4936406 G A OR51G2 Missense_Mutation p.P163L 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 11 4936441 4936441 C T OR51G2 Silent p.L151L 0.53 TCGA-D3-A2JF-06 11 4967600 4967600 G A OR51A4 Missense_Mutation p.S244L 0.12 deleterious(0) probably_damaging(0.969) TCGA-D3-A2JF-06 11 4976213 4976213 G A OR51A2 Missense_Mutation p.S244L 0.22 deleterious(0) probably_damaging(0.969) TCGA-D3-A2JF-06 11 5020433 5020433 G A OR51L1 Missense_Mutation p.G74E 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 11 51412003 51412003 C T OR4A5 Silent p.L131L 0.42 TCGA-D3-A2JF-06 11 51515925 51515925 C T OR4C46 Missense_Mutation p.S215F 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2JF-06 11 5153042 5153042 G A OR52A5 Silent p.I277I 0.26 TCGA-D3-A2JF-06 11 5172901 5172901 C T OR52A1 Silent p.Q233Q 0.26 TCGA-D3-A2JF-06 11 534285 534285 C T HRAS Missense_Mutation p.G13D 0.43 deleterious(0.04) possibly_damaging(0.506) TCGA-D3-A2JF-06 11 5363925 5363925 G A OR51B5 Missense_Mutation p.A277V 0.57 tolerated(0.9) benign(0) TCGA-D3-A2JF-06 11 55063106 55063106 G A TRIM51HP RNA 0.39 TCGA-D3-A2JF-06 11 5510698 5510698 C T OR52D1 Silent p.F254F 0.49 TCGA-D3-A2JF-06 11 5537037 5537037 G A UBQLNL Missense_Mutation p.S212F 0.55 tolerated(0.05) benign(0.026) TCGA-D3-A2JF-06 11 55761808 55761808 G A OR5F1 Silent p.F98F 0.36 TCGA-D3-A2JF-06 11 55873406 55873406 G A OR8H2 Silent p.E296E 0.30 TCGA-D3-A2JF-06 11 55927701 55927701 G A OR8K5 Silent p.F31F 0.34 TCGA-D3-A2JF-06 11 55999821 55999821 C T OR5T2 Missense_Mutation p.G281R 0.38 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JF-06 11 56000181 56000181 G A OR5T2 Missense_Mutation p.R161C 0.38 deleterious(0.02) benign(0.081) TCGA-D3-A2JF-06 11 56128023 56128023 C T OR8J1 Silent p.L101L 0.19 TCGA-D3-A2JF-06 11 56237759 56237759 G A OR5M3 Missense_Mutation p.S72F 0.38 deleterious(0) possibly_damaging(0.5) TCGA-D3-A2JF-06 11 56237851 56237851 G A OR5M3 Silent p.I41I 0.30 TCGA-D3-A2JF-06 11 56467982 56467982 G A OR9G1 Missense_Mutation p.G40E 0.11 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JF-06 11 57081173 57081173 G A TNKS1BP1 Missense_Mutation p.P330L 0.35 tolerated(0.15) benign(0.009) TCGA-D3-A2JF-06 11 5729476 5729476 C T TRIM22 Silent p.L283L 0.20 TCGA-D3-A2JF-06 11 57373619 57373619 C T SERPING1 Silent p.I274I 0.34 TCGA-D3-A2JF-06 11 5758616 5758616 C T OR56B1 Silent p.I290I 0.23 TCGA-D3-A2JF-06 11 57958097 57958097 G A OR9Q2 Missense_Mutation p.M45I 0.21 tolerated(0.07) benign(0.013) TCGA-D3-A2JF-06 11 57995988 57995988 C T OR10Q1 Silent p.A120A 0.46 TCGA-D3-A2JF-06 11 58126513 58126513 G A OR5B17 Silent p.F10F 0.41 TCGA-D3-A2JF-06 11 58604614 58604614 A G GLYATL2 Missense_Mutation p.V117A 0.36 tolerated(0.68) benign(0.376) TCGA-D3-A2JF-06 11 5862462 5862462 G A OR52E6 Silent p.I222I 0.63 TCGA-D3-A2JF-06 11 5905957 5905957 C T OR52E4 Silent p.I145I 0.21 TCGA-D3-A2JF-06 11 59480687 59480687 G A OR10V1 Missense_Mutation p.P211L 0.28 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JF-06 11 59857197 59857197 C T MS4A2 Missense_Mutation p.P30L 0.33 tolerated(1) benign(0.005) TCGA-D3-A2JF-06 11 59857198 59857198 C T MS4A2 Silent p.P30P 0.34 TCGA-D3-A2JF-06 11 59949187 59949187 G A MS4A6A Missense_Mutation p.P33L 0.41 tolerated(0.31) benign(0.159) TCGA-D3-A2JF-06 11 60105270 60105270 C T MS4A6E Silent p.F68F 0.32 TCGA-D3-A2JF-06 11 60561513 60561513 C T MS4A10 Silent p.S143S 0.31 TCGA-D3-A2JF-06 11 60637362 60637362 G A ZP1 Missense_Mutation p.R224Q 0.31 tolerated(0.35) benign(0) TCGA-D3-A2JF-06 11 60781027 60781027 G A CD6 Missense_Mutation p.G428E 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 11 61113347 61113347 G A DAK Missense_Mutation p.A502T 0.33 tolerated(0.06) possibly_damaging(0.633) TCGA-D3-A2JF-06 11 61672311 61672311 G A RAB3IL1 Missense_Mutation p.S234F 0.33 deleterious(0) possibly_damaging(0.519) TCGA-D3-A2JF-06 11 61897355 61897355 C T INCENP Missense_Mutation p.S119F 0.35 deleterious(0.05) benign(0.184) TCGA-D3-A2JF-06 11 6231685 6231685 C T C11orf42 Silent p.V226V 0.47 TCGA-D3-A2JF-06 11 64416264 64416264 G A NRXN2 Silent p.L1075L 0.45 TCGA-D3-A2JF-06 11 67250518 67250518 A G AIP 5'UTR 0.38 TCGA-D3-A2JF-06 11 68125190 68125190 G A LRP5 Silent p.K187K 0.28 TCGA-D3-A2JF-06 11 68181317 68181317 C T LRP5 Silent p.F888F 0.35 TCGA-D3-A2JF-06 11 6898403 6898403 G A OR10A4 Silent p.V175V 0.26 TCGA-D3-A2JF-06 11 6913246 6913246 G A OR2D2 Silent p.F162F 0.57 TCGA-D3-A2JF-06 11 6953378 6953378 C T ZNF215 5'UTR 0.58 TCGA-D3-A2JF-06 11 73669387 73669387 C T DNAJB13 Missense_Mutation p.H32Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 11 74907660 74907660 A C SLCO2B1 Missense_Mutation p.Y512S 0.18 deleterious(0) possibly_damaging(0.825) TCGA-D3-A2JF-06 11 74907661 74907661 C T SLCO2B1 Silent p.Y512Y 0.18 TCGA-D3-A2JF-06 11 75438621 75438621 C T MOGAT2 Missense_Mutation p.H138Y 0.38 tolerated(1) benign(0.075) TCGA-D3-A2JF-06 11 75898085 75898085 C T WNT11 3'UTR 0.32 TCGA-D3-A2JF-06 11 75902746 75902746 G A WNT11 Missense_Mutation p.P251L 0.32 tolerated(0.25) possibly_damaging(0.767) TCGA-D3-A2JF-06 11 77412271 77412271 G A RSF1 Missense_Mutation p.T668I 0.43 tolerated_low_confidence(0.38) benign(0) TCGA-D3-A2JF-06 11 77937788 77937788 C T GAB2 Silent p.L310L 0.39 TCGA-D3-A2JF-06 11 83195191 83195191 C T DLG2 Silent p.Q758Q 0.32 TCGA-D3-A2JF-06 11 8414052 8414052 G A STK33 3'UTR 0.22 TCGA-D3-A2JF-06 11 89391867 89391867 G A FOLH1B 5'Flank 0.47 TCGA-D3-A2JF-06 11 89906989 89906989 C T NAALAD2 Intron 0.29 TCGA-D3-A2JF-06 11 92532423 92532423 C T FAT3 Missense_Mutation p.P2082S 0.32 probably_damaging(1) TCGA-D3-A2JF-06 11 93796851 93796851 C T HEPHL1 Missense_Mutation p.S198F 0.33 deleterious(0) probably_damaging(0.971) TCGA-D3-A2JF-06 11 93800690 93800690 C T HEPHL1 Silent p.F279F 0.37 TCGA-D3-A2JF-06 11 93837869 93837869 G A HEPHL1 Missense_Mutation p.R953Q 0.37 tolerated(0.23) benign(0.009) TCGA-D3-A2JF-06 11 94038906 94038906 G A FOLR4 Missense_Mutation p.R35K 0.54 tolerated(0.83) benign(0.006) TCGA-D3-A2JF-06 11 94113448 94113448 G A GPR83 Missense_Mutation p.S380F 0.08 deleterious(0.01) benign(0.258) TCGA-D3-A2JF-06 11 94113686 94113686 A G GPR83 Missense_Mutation p.F301L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 11 94917500 94917500 T C SESN3 Intron 0.53 TCGA-D3-A2JF-06 11 9875182 9875182 G A SBF2 Missense_Mutation p.S814F 0.33 tolerated(0.09) benign(0.197) TCGA-D3-A2JF-06 12 101381371 101381371 G C ANO4 Missense_Mutation p.R184S 0.45 tolerated(0.37) benign(0.062) TCGA-D3-A2JF-06 12 104387193 104387193 G A GLT8D2 Missense_Mutation p.P286L 0.64 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JF-06 12 104487275 104487275 C T HCFC2 Missense_Mutation p.P466S 0.45 tolerated(0.41) benign(0) TCGA-D3-A2JF-06 12 104719121 104719121 C G TXNRD1 Missense_Mutation p.Q408E 0.57 tolerated(0.21) benign(0.393) TCGA-D3-A2JF-06 12 108985763 108985763 G A TMEM119 Missense_Mutation p.P133S 0.35 deleterious(0.03) probably_damaging(0.955) TCGA-D3-A2JF-06 12 109523518 109523518 G A USP30 Missense_Mutation p.G446R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 12 109523519 109523519 G A USP30 Missense_Mutation p.G446E 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 12 109530609 109530609 G A ALKBH2 5'UTR 0.38 TCGA-D3-A2JF-06 12 110226369 110226369 C T TRPV4 Missense_Mutation p.D682N 0.36 deleterious(0.04) probably_damaging(0.986) TCGA-D3-A2JF-06 12 111776115 111776115 C T CUX2 Silent p.I1074I 0.46 TCGA-D3-A2JF-06 12 112237755 112237755 G A ALDH2 Missense_Mutation p.E432K 0.37 deleterious(0) possibly_damaging(0.771) TCGA-D3-A2JF-06 12 113332402 113332402 G A RPH3A Missense_Mutation p.G599R 0.43 deleterious(0) probably_damaging(0.924) TCGA-D3-A2JF-06 12 113346562 113346562 C T OAS1 Silent p.F134F 0.34 TCGA-D3-A2JF-06 12 113405371 113405371 C T OAS3 Silent p.I946I 0.50 TCGA-D3-A2JF-06 12 113545030 113545030 C T RASAL1 Missense_Mutation p.G511E 0.15 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JF-06 12 113554926 113554926 T G RASAL1 Missense_Mutation p.K228T 0.35 tolerated(0.05) benign(0.005) TCGA-D3-A2JF-06 12 11461408 11461408 C T PRB4 Missense_Mutation p.G170E 0.46 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JF-06 12 11546699 11546699 C T PRB2 Missense_Mutation p.G105R 0.06 deleterious(0) unknown(0) TCGA-D3-A2JF-06 12 117665447 117665447 C T NOS1 Splice_Site p.X1170_splice 0.44 TCGA-D3-A2JF-06 12 117691461 117691461 C T NOS1 Missense_Mutation p.G911E 0.44 deleterious(0) probably_damaging(0.938) TCGA-D3-A2JF-06 12 117710192 117710192 C T NOS1 Missense_Mutation p.E613K 0.23 tolerated(0.06) probably_damaging(0.986) TCGA-D3-A2JF-06 12 118199232 118199232 C T KSR2 Nonsense_Mutation p.W190* 0.25 TCGA-D3-A2JF-06 12 119583247 119583247 C T SRRM4 Missense_Mutation p.S278L 0.62 tolerated_low_confidence(0.14) possibly_damaging(0.467) TCGA-D3-A2JF-06 12 121088396 121088396 C T CABP1 Intron 0.17 TCGA-D3-A2JF-06 12 121454265 121454265 T C C12orf43 Missense_Mutation p.S5G 0.22 tolerated(0.23) benign(0) TCGA-D3-A2JF-06 12 121458607 121458607 G A OASL Silent p.I434I 0.13 TCGA-D3-A2JF-06 12 121458628 121458628 C T OASL Silent p.L427L 0.15 TCGA-D3-A2JF-06 12 122481813 122481813 C T BCL7A Missense_Mutation p.S98F 0.40 tolerated(0.2) probably_damaging(0.997) TCGA-D3-A2JF-06 12 123641384 123641384 G A MPHOSPH9 Silent p.F1022F 0.30 TCGA-D3-A2JF-06 12 126139335 126139335 G A TMEM132B 3'UTR 0.33 TCGA-D3-A2JF-06 12 132405729 132405729 G A ULK1 Missense_Mutation p.G1016R 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 12 132515772 132515772 C T EP400 Intron 0.16 TCGA-D3-A2JF-06 12 132688193 132688193 G A GALNT9 Missense_Mutation p.R8C 0.24 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JF-06 12 13716248 13716248 C T GRIN2B Silent p.V1308V 0.43 TCGA-D3-A2JF-06 12 14018774 14018774 G A GRIN2B Silent p.I123I 0.40 TCGA-D3-A2JF-06 12 14774959 14774959 C T GUCY2C Missense_Mutation p.D861N 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 12 15656883 15656883 G A PTPRO Missense_Mutation p.E383K 0.14 tolerated_low_confidence(0.08) benign(0.025) TCGA-D3-A2JF-06 12 18234100 18234100 G A RERGL 3'UTR 0.57 TCGA-D3-A2JF-06 12 18800921 18800921 G A PIK3C2G Missense_Mutation p.D1433N 0.34 tolerated(1) benign(0) TCGA-D3-A2JF-06 12 20854350 20854350 C T SLCO1C1 Silent p.I76I 0.26 TCGA-D3-A2JF-06 12 20874895 20874895 C T SLCO1C1 Silent p.S311S 0.15 TCGA-D3-A2JF-06 12 21033868 21033868 G A SLCO1B3 Missense_Mutation p.E471K 0.38 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JF-06 12 21325719 21325719 G A SLCO1B1 Missense_Mutation p.E74K 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 12 21727167 21727167 G A GYS2 Missense_Mutation p.P197S 0.39 tolerated(0.12) possibly_damaging(0.612) TCGA-D3-A2JF-06 12 21918682 21918682 C T KCNJ8 Missense_Mutation p.G417E 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-D3-A2JF-06 12 25702438 25702438 G A IFLTD1 Silent p.S44S 0.18 TCGA-D3-A2JF-06 12 2705076 2705076 G A CACNA1C Silent p.T900T 0.17 TCGA-D3-A2JF-06 12 2794989 2794989 C T CACNA1C Silent p.F1935F 0.35 TCGA-D3-A2JF-06 12 28116269 28116269 G A PTHLH Intron 0.32 TCGA-D3-A2JF-06 12 28123093 28123093 G A PTHLH 5'UTR 0.19 TCGA-D3-A2JF-06 12 29617457 29617457 C T OVCH1 Nonsense_Mutation p.W703* 0.62 TCGA-D3-A2JF-06 12 3131044 3131044 C T TEAD4 Missense_Mutation p.S253F 0.49 deleterious(0.01) benign(0.345) TCGA-D3-A2JF-06 12 3692299 3692299 G A PRMT8 Missense_Mutation p.D302N 0.55 deleterious(0) possibly_damaging(0.872) TCGA-D3-A2JF-06 12 40114666 40114666 G A C12orf40 Missense_Mutation p.M524I 0.10 tolerated(0.07) benign(0.001) TCGA-D3-A2JF-06 12 41365267 41365267 G A CNTN1 Intron 0.40 TCGA-D3-A2JF-06 12 43896073 43896073 C T ADAMTS20 Missense_Mutation p.R250K 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 12 45410065 45410065 C T DBX2 3'UTR 0.23 TCGA-D3-A2JF-06 12 45567653 45567653 G A PLEKHA8P1 RNA 0.26 TCGA-D3-A2JF-06 12 46244034 46244034 C T ARID2 Missense_Mutation p.P710S 0.45 tolerated_low_confidence(0.9) benign(0.004) TCGA-D3-A2JF-06 12 46591572 46591572 G A SLC38A1 Silent p.F431F 0.42 TCGA-D3-A2JF-06 12 47186763 47186763 C T SLC38A4 Missense_Mutation p.G31E 0.42 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 12 4870164 4870164 C T GALNT8 Missense_Mutation p.S405F 0.42 deleterious(0) benign(0.419) TCGA-D3-A2JF-06 12 49485129 49485129 T C DHH Missense_Mutation p.N116S 0.47 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JF-06 12 49579362 49579362 G A TUBA1A Missense_Mutation p.P263S 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.473) TCGA-D3-A2JF-06 12 49951225 49951225 G A KCNH3 Missense_Mutation p.R914K 0.35 tolerated(1) benign(0.002) TCGA-D3-A2JF-06 12 5021439 5021439 G A KCNA1 Missense_Mutation p.V299I 0.13 deleterious(0) probably_damaging(0.977) TCGA-D3-A2JF-06 12 50344537 50344537 G A AQP2 5'UTR 0.30 TCGA-D3-A2JF-06 12 51086731 51086731 G A DIP2B Splice_Site p.X552_splice 0.32 TCGA-D3-A2JF-06 12 52284683 52284683 C T ANKRD33 Missense_Mutation p.P318L 0.41 deleterious(0) possibly_damaging(0.869) TCGA-D3-A2JF-06 12 52579234 52579234 C T KRT80 Silent p.V146V 0.43 TCGA-D3-A2JF-06 12 52967314 52967314 C T KRT74 Missense_Mutation p.G83E 0.40 tolerated(0.09) benign(0.005) TCGA-D3-A2JF-06 12 53070202 53070202 C T KRT1 Silent p.L444L 0.17 TCGA-D3-A2JF-06 12 53452555 53452555 C T TENC1 Missense_Mutation p.A460V 0.09 tolerated(1) probably_damaging(0.998) TCGA-D3-A2JF-06 12 53452556 53452556 C T TENC1 Silent p.A460A 0.10 TCGA-D3-A2JF-06 12 53586959 53586959 G A ITGB7 Missense_Mutation p.A564V 0.48 tolerated(0.89) benign(0.344) TCGA-D3-A2JF-06 12 53715136 53715136 G A AAAS Silent p.F38F 0.43 TCGA-D3-A2JF-06 12 54936461 54936461 C T NCKAP1L Silent p.L1126L 0.45 TCGA-D3-A2JF-06 12 54966504 54966504 C T PDE1B Silent p.F238F 0.46 TCGA-D3-A2JF-06 12 55024631 55024631 G A LACRT 3'UTR 0.53 TCGA-D3-A2JF-06 12 55252025 55252025 G A MUCL1 Silent p.%3D 0.32 TCGA-D3-A2JF-06 12 55715194 55715194 G A OR6C1 Missense_Mutation p.G271R 0.37 deleterious_low_confidence(0.01) benign(0.25) TCGA-D3-A2JF-06 12 55759151 55759151 G A OR6C75 Missense_Mutation p.G86E 0.39 deleterious_low_confidence(0.04) benign(0.01) TCGA-D3-A2JF-06 12 55887086 55887086 C T OR6C68 Missense_Mutation p.R309C 0.31 deleterious_low_confidence(0.02) benign(0.016) TCGA-D3-A2JF-06 12 56031367 56031367 C T OR10P1 Missense_Mutation p.S231F 0.19 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JF-06 12 56086745 56086745 C T ITGA7 Silent p.R913R 0.13 TCGA-D3-A2JF-06 12 56848075 56848075 G A MIP Missense_Mutation p.T108I 0.38 tolerated(0.09) probably_damaging(1) TCGA-D3-A2JF-06 12 5687533 5687533 G A ANO2 Silent p.I795I 0.36 TCGA-D3-A2JF-06 12 57114010 57114010 G A NACA Missense_Mutation p.S435F 0.50 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-D3-A2JF-06 12 57578891 57578891 C T LRP1 Silent p.R2122R 0.47 TCGA-D3-A2JF-06 12 58001063 58001063 C T DTX3 Silent p.P139P 0.40 TCGA-D3-A2JF-06 12 58001064 58001064 C T DTX3 Missense_Mutation p.P140S 0.40 tolerated(0.8) benign(0.005) TCGA-D3-A2JF-06 12 59268218 59268218 G A LRIG3 Missense_Mutation p.H945Y 0.30 tolerated_low_confidence(0.62) benign(0.003) TCGA-D3-A2JF-06 12 6061038 6061038 C T VWF Missense_Mutation p.M2709I 0.13 tolerated(0.41) benign(0) TCGA-D3-A2JF-06 12 62790107 62790107 C T USP15 Missense_Mutation p.P868L 0.11 tolerated(0.06) benign(0.056) TCGA-D3-A2JF-06 12 6421474 6421474 C T PLEKHG6 Nonsense_Mutation p.R28* 0.43 TCGA-D3-A2JF-06 12 66357088 66357088 G A HMGA2 3'UTR 0.23 TCGA-D3-A2JF-06 12 66856755 66856755 C T GRIP1 Missense_Mutation p.E331K 0.33 tolerated(0.12) probably_damaging(0.996) TCGA-D3-A2JF-06 12 67700147 67700147 C G CAND1 Missense_Mutation p.T900S 0.23 tolerated(0.34) benign(0) TCGA-D3-A2JF-06 12 6787525 6787525 G A ZNF384 Missense_Mutation p.P152S 0.35 tolerated(0.31) possibly_damaging(0.882) TCGA-D3-A2JF-06 12 68052220 68052220 C T DYRK2 Silent p.F511F 0.13 TCGA-D3-A2JF-06 12 70091477 70091477 C T BEST3 Silent p.R34R 0.45 TCGA-D3-A2JF-06 12 70189094 70189094 G A RAB3IP Silent p.V302V 0.40 TCGA-D3-A2JF-06 12 70206786 70206786 C T RAB3IP Nonsense_Mutation p.Q441* 0.46 TCGA-D3-A2JF-06 12 70949861 70949861 G A PTPRB Silent p.I1594I 0.33 TCGA-D3-A2JF-06 12 70953057 70953057 G A PTPRB Intron 0.19 TCGA-D3-A2JF-06 12 7170304 7170304 G A C1S Silent p.V108V 0.32 TCGA-D3-A2JF-06 12 72680647 72680647 A G TRHDE Silent p.S322S 0.54 TCGA-D3-A2JF-06 12 73012741 73012741 C T TRHDE Missense_Mutation p.P753S 0.21 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A2JF-06 12 73046806 73046806 C T TRHDE Silent p.L907L 0.38 TCGA-D3-A2JF-06 12 7639286 7639286 A G CD163 Missense_Mutation p.V756A 0.24 deleterious(0.01) possibly_damaging(0.711) TCGA-D3-A2JF-06 12 7640235 7640235 G A CD163 Silent p.T590T 0.37 TCGA-D3-A2JF-06 12 8200492 8200492 C T FOXJ2 Silent p.L278L 0.33 TCGA-D3-A2JF-06 12 8758052 8758052 G A AICDA Silent p.L62L 0.16 TCGA-D3-A2JF-06 12 8976425 8976425 G A A2ML1 Missense_Mutation p.G119E 0.22 tolerated(0.84) benign(0.003) TCGA-D3-A2JF-06 12 89916654 89916654 G A GALNT4 Missense_Mutation p.P558L 0.18 deleterious(0.01) benign(0.111) TCGA-D3-A2JF-06 12 94543483 94543483 T A PLXNC1 Missense_Mutation p.F246I 0.36 deleterious(0.01) possibly_damaging(0.846) TCGA-D3-A2JF-06 12 96300215 96300215 T A CCDC38 Missense_Mutation p.R107W 0.18 deleterious(0) probably_damaging(0.941) TCGA-D3-A2JF-06 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.25 tolerated(0.07) benign(0.183) TCGA-D3-A2JF-06 12 97137642 97137642 G A C12orf55 Missense_Mutation p.G2504E 0.43 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 13 103718370 103718370 C T SLC10A2 Missense_Mutation p.G77E 0.31 deleterious(0) probably_damaging(0.949) TCGA-D3-A2JF-06 13 103718592 103718592 T A SLC10A2 Missense_Mutation p.D3V 0.34 deleterious_low_confidence(0) benign(0.013) TCGA-D3-A2JF-06 13 111290825 111290825 G A CARKD Missense_Mutation p.R377Q 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A2JF-06 13 114469087 114469087 G A TMEM255B Splice_Site p.X16_splice 0.37 TCGA-D3-A2JF-06 13 19751592 19751592 G A TUBA3C Silent p.V177V 0.31 TCGA-D3-A2JF-06 13 19753556 19753556 T G TUBA3C Missense_Mutation p.T51P 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-D3-A2JF-06 13 20048166 20048166 C T TPTE2 Missense_Mutation p.D94N 0.33 deleterious(0.01) possibly_damaging(0.895) TCGA-D3-A2JF-06 13 24465876 24465876 C T C1QTNF9B Missense_Mutation p.G185E 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 13 24895458 24895458 G A AL359736.1 Missense_Mutation p.P37S 0.14 deleterious(0) probably_damaging(0.986) TCGA-D3-A2JF-06 13 24895839 24895839 A C C1QTNF9 Missense_Mutation p.N312T 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 13 25367434 25367434 G A RNF17 Missense_Mutation p.G397E 0.31 tolerated(0.1) probably_damaging(0.994) TCGA-D3-A2JF-06 13 26788680 26788680 G A RNF6 Missense_Mutation p.R447C 0.22 deleterious(0) possibly_damaging(0.667) TCGA-D3-A2JF-06 13 28624343 28624343 G A FLT3 Missense_Mutation p.P211S 0.36 tolerated(0.82) benign(0.004) TCGA-D3-A2JF-06 13 28644644 28644644 G A FLT3 Missense_Mutation p.S50L 0.22 tolerated_low_confidence(0.09) benign(0.068) TCGA-D3-A2JF-06 13 29599346 29599346 G A MTUS2 Missense_Mutation p.E181K 0.32 tolerated(0.06) possibly_damaging(0.783) TCGA-D3-A2JF-06 13 33638353 33638353 G A KL 3'UTR 0.58 TCGA-D3-A2JF-06 13 35733730 35733730 A G NBEA Missense_Mutation p.N1141S 0.32 tolerated_low_confidence(0.65) benign(0.001) TCGA-D3-A2JF-06 13 38211501 38211501 C T TRPC4 Missense_Mutation p.V830I 0.25 tolerated_low_confidence(0.22) benign(0.038) TCGA-D3-A2JF-06 13 39263580 39263580 C T FREM2 Missense_Mutation p.P700L 0.40 deleterious(0.03) benign(0.327) TCGA-D3-A2JF-06 13 39424321 39424321 G A FREM2 Missense_Mutation p.D2176N 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 13 39454829 39454829 G A FREM2 Missense_Mutation p.E3139K 0.27 tolerated_low_confidence(0.79) benign(0) TCGA-D3-A2JF-06 13 39587266 39587266 G A PROSER1 Missense_Mutation p.P708L 0.39 deleterious(0) possibly_damaging(0.616) TCGA-D3-A2JF-06 13 40301670 40301670 T C COG6 Missense_Mutation p.L604P 0.31 tolerated(0.1) benign(0.037) TCGA-D3-A2JF-06 13 41932591 41932591 G A NAA16 Missense_Mutation p.M413I 0.30 tolerated(0.58) benign(0) TCGA-D3-A2JF-06 13 42264332 42264332 G A VWA8 Missense_Mutation p.P1316S 0.33 tolerated(0.83) benign(0.003) TCGA-D3-A2JF-06 13 45912886 45912886 G A TPT1 Missense_Mutation p.P142L 0.26 tolerated(0.09) benign(0.138) TCGA-D3-A2JF-06 13 46357439 46357439 G A SIAH3 3'UTR 0.36 TCGA-D3-A2JF-06 13 47011982 47011982 C T PPP1R2P4 RNA 0.33 TCGA-D3-A2JF-06 13 50235109 50235109 G A EBPL Nonsense_Mutation p.Q206* 0.35 TCGA-D3-A2JF-06 13 51922375 51922375 C T SERPINE3 Nonsense_Mutation p.Q243* 0.60 TCGA-D3-A2JF-06 13 58240870 58240870 T G PCDH17 Missense_Mutation p.S900R 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 13 58298797 58298797 C T PCDH17 Missense_Mutation p.S950F 0.55 deleterious(0) probably_damaging(0.973) TCGA-D3-A2JF-06 13 72063173 72063173 G A DACH1 Missense_Mutation p.P562S 0.21 possibly_damaging(0.804) TCGA-D3-A2JF-06 13 76393554 76393554 G A LMO7 Missense_Mutation p.R464Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 13 86370121 86370121 G A SLITRK6 Missense_Mutation p.L175F 0.34 deleterious(0.03) probably_damaging(1) TCGA-D3-A2JF-06 13 96599352 96599352 C T UGGT2 Missense_Mutation p.R539Q 0.16 deleterious(0.04) benign(0.16) TCGA-D3-A2JF-06 13 98673359 98673359 G C IPO5 Missense_Mutation p.R1078P 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 13 99535332 99535332 G A DOCK9 Silent p.A841A 0.37 TCGA-D3-A2JF-06 14 101434460 101434460 G A SNORD114-11 RNA 0.42 TCGA-D3-A2JF-06 14 101533063 101533063 G A MIR656 RNA 0.22 TCGA-D3-A2JF-06 14 102495968 102495968 C T DYNC1H1 Silent p.F3187F 0.18 TCGA-D3-A2JF-06 14 103576431 103576431 C T EXOC3L4 Silent p.L680L 0.38 TCGA-D3-A2JF-06 14 104642587 104642587 G A KIF26A Silent p.G1154G 0.31 TCGA-D3-A2JF-06 14 105409049 105409049 C A AHNAK2 Missense_Mutation p.G4247C 0.20 probably_damaging(0.956) TCGA-D3-A2JF-06 14 106110258 106110258 G A IGHG2 Silent p.F120F 0.23 TCGA-D3-A2JF-06 14 106725652 106725652 C T IGHV3-23 Translation_Start_Site p.M1? 0.47 deleterious_low_confidence(0.01) benign(0.246) TCGA-D3-A2JF-06 14 106733284 106733284 C T IGHV1-24 Missense_Mutation p.D71N 0.24 tolerated(1) benign(0.002) TCGA-D3-A2JF-06 14 106963148 106963148 C T IGHV1-45 Missense_Mutation p.G45E 0.21 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JF-06 14 20019948 20019948 C T POTEM Missense_Mutation p.M91I 0.22 deleterious_low_confidence(0.01) benign(0.035) TCGA-D3-A2JF-06 14 20216253 20216253 C T OR4Q3 Silent p.L223L 0.09 TCGA-D3-A2JF-06 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.21 deleterious(0) possibly_damaging(0.796) TCGA-D3-A2JF-06 14 20295941 20295941 G A OR4N2 Missense_Mutation p.G112R 0.10 deleterious(0) benign(0.058) TCGA-D3-A2JF-06 14 20344949 20344949 G A OR4K2 Missense_Mutation p.D175N 0.09 deleterious(0.04) possibly_damaging(0.898) TCGA-D3-A2JF-06 14 20389599 20389599 C G OR4K5 Missense_Mutation p.F278L 0.18 tolerated(0.14) benign(0.171) TCGA-D3-A2JF-06 14 20502478 20502478 G A OR4K13 Missense_Mutation p.S147F 0.13 tolerated(0.18) benign(0.002) TCGA-D3-A2JF-06 14 21109317 21109317 C T OR6S1 Silent p.Q178Q 0.23 TCGA-D3-A2JF-06 14 21109520 21109520 C T OR6S1 Missense_Mutation p.A111T 0.19 tolerated(1) benign(0.316) TCGA-D3-A2JF-06 14 21897229 21897229 G A CHD8 Missense_Mutation p.T370I 0.11 tolerated_low_confidence(0.2) benign(0.006) TCGA-D3-A2JF-06 14 22180858 22180858 G A TRAV2 Missense_Mutation p.E44K 0.45 tolerated(0.09) probably_damaging(0.981) TCGA-D3-A2JF-06 14 22314949 22314949 C T TRAV8-2 Silent p.L2L 0.11 TCGA-D3-A2JF-06 14 22409557 22409557 G A TRAV9-2 Missense_Mutation p.G16E 0.54 tolerated(0.17) possibly_damaging(0.519) TCGA-D3-A2JF-06 14 22555003 22555003 A T TRAV23DV6 Missense_Mutation p.K43N 0.11 deleterious(0) benign(0.348) TCGA-D3-A2JF-06 14 22580760 22580760 G A TRAV25 Missense_Mutation p.E35K 0.21 tolerated(0.17) benign(0.355) TCGA-D3-A2JF-06 14 22616438 22616438 G A TRAV27 Missense_Mutation p.G60D 0.22 tolerated(0.12) benign(0.115) TCGA-D3-A2JF-06 14 22694963 22694963 C T TRAV36DV7 Nonsense_Mutation p.R52* 0.20 TCGA-D3-A2JF-06 14 24659547 24659547 G A TM9SF1 Intron 0.13 TCGA-D3-A2JF-06 14 24878674 24878674 C T NYNRIN Silent p.P558P 0.12 TCGA-D3-A2JF-06 14 38295481 38295481 G A TTC6 Missense_Mutation p.G1686R 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 14 38723923 38723923 C T CLEC14A Silent p.K435K 0.33 TCGA-D3-A2JF-06 14 47504306 47504306 C T MDGA2 Missense_Mutation p.R576K 0.16 deleterious(0.01) possibly_damaging(0.694) TCGA-D3-A2JF-06 14 52433399 52433399 C T GNG2 Silent p.I70I 0.44 TCGA-D3-A2JF-06 14 52520438 52520438 G A NID2 Missense_Mutation p.P430S 0.21 tolerated(0.25) benign(0.081) TCGA-D3-A2JF-06 14 52734926 52734926 C T PTGDR Missense_Mutation p.L132F 0.45 tolerated(0.12) probably_damaging(1) TCGA-D3-A2JF-06 14 55878504 55878504 C T ATG14 Missense_Mutation p.E13K 0.21 tolerated_low_confidence(0.75) benign(0.007) TCGA-D3-A2JF-06 14 58605671 58605671 G A C14orf37 Missense_Mutation p.P136S 0.37 tolerated(0.27) possibly_damaging(0.803) TCGA-D3-A2JF-06 14 58768329 58768329 G A ARID4A Missense_Mutation p.G13E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 14 59113795 59113795 C T DACT1 Silent p.L818L 0.13 TCGA-D3-A2JF-06 14 63246607 63246607 C T KCNH5 Missense_Mutation p.E620K 0.55 deleterious(0.03) possibly_damaging(0.871) TCGA-D3-A2JF-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.16 TCGA-D3-A2JF-06 14 68215353 68215353 G A ZFYVE26 Missense_Mutation p.R2474W 0.14 deleterious(0) possibly_damaging(0.599) TCGA-D3-A2JF-06 14 69704381 69704381 C T EXD2 Missense_Mutation p.S461F 0.48 deleterious(0) probably_damaging(0.935) TCGA-D3-A2JF-06 14 70633493 70633493 C T SLC8A3 Silent p.E549E 0.50 TCGA-D3-A2JF-06 14 70634273 70634273 C T SLC8A3 Silent p.G289G 0.56 TCGA-D3-A2JF-06 14 73958627 73958627 G A HEATR4 Intron 0.39 TCGA-D3-A2JF-06 14 74086379 74086379 C T ACOT6 Missense_Mutation p.P154S 0.15 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 14 74726430 74726430 C T VSX2 Silent p.S235S 0.49 TCGA-D3-A2JF-06 14 74825332 74825332 C T VRTN Nonsense_Mutation p.Q616* 0.18 TCGA-D3-A2JF-06 14 76429638 76429638 C T TGFB3 Intron 0.40 TCGA-D3-A2JF-06 14 77605822 77605822 G A ZDHHC22 Missense_Mutation p.T87I 0.69 tolerated(0.55) benign(0.012) TCGA-D3-A2JF-06 14 79175815 79175815 G A NRXN3 Missense_Mutation p.E120K 0.09 tolerated(0.71) possibly_damaging(0.669) TCGA-D3-A2JF-06 14 89039230 89039230 T C ZC3H14 Missense_Mutation p.L247P 0.16 tolerated(0.14) benign(0.003) TCGA-D3-A2JF-06 14 91755456 91755456 C T CCDC88C Silent p.V1478V 0.36 TCGA-D3-A2JF-06 14 92174488 92174488 G A CATSPERB Nonsense_Mutation p.R155* 0.26 TCGA-D3-A2JF-06 14 92278801 92278801 C T TC2N Silent p.K52K 0.58 TCGA-D3-A2JF-06 14 92470030 92470030 G A TRIP11 Silent p.F1430F 0.44 TCGA-D3-A2JF-06 14 94007139 94007139 G A UNC79 Missense_Mutation p.D319N 0.54 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A2JF-06 14 94708237 94708237 C T PPP4R4 Silent p.I363I 0.41 TCGA-D3-A2JF-06 14 94914801 94914801 C T SERPINA11 Missense_Mutation p.G104E 0.51 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 14 95030165 95030165 G A SERPINA4 Missense_Mutation p.D116N 0.48 deleterious(0.02) probably_damaging(0.943) TCGA-D3-A2JF-06 14 95057106 95057106 C T SERPINA5 Missense_Mutation p.P304L 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 14 95057107 95057107 C T SERPINA5 Silent p.P304P 0.48 TCGA-D3-A2JF-06 14 96129881 96129881 C T TCL6 RNA 0.47 TCGA-D3-A2JF-06 14 99641880 99641880 G A BCL11B Silent p.F431F 0.29 TCGA-D3-A2JF-06 15 100214787 100214787 C T MEF2A Missense_Mutation p.P196S 0.30 tolerated(0.09) probably_damaging(0.986) TCGA-D3-A2JF-06 15 100942823 100942823 G A CERS3 3'UTR 0.43 TCGA-D3-A2JF-06 15 101041962 101041962 G A CERS3 Silent p.L31L 0.33 TCGA-D3-A2JF-06 15 20710730 20710730 C T HERC2P3 RNA 0.24 TCGA-D3-A2JF-06 15 22851028 22851028 C T TUBGCP5 Silent p.V430V 0.34 TCGA-D3-A2JF-06 15 22867488 22867488 T C TUBGCP5 Missense_Mutation p.L855P 0.36 tolerated(0.29) benign(0.003) TCGA-D3-A2JF-06 15 25330611 25330611 C T SNORD116-18 RNA 0.46 TCGA-D3-A2JF-06 15 25334973 25334973 G A SNORD116-23 5'Flank 0.32 TCGA-D3-A2JF-06 15 25453289 25453289 C T SNORD115-21 RNA 0.35 TCGA-D3-A2JF-06 15 28273074 28273074 G A OCA2 Missense_Mutation p.S153F 0.27 deleterious(0) benign(0.27) TCGA-D3-A2JF-06 15 28902335 28902335 C T HERC2P9 Intron 0.22 TCGA-D3-A2JF-06 15 29346534 29346534 C T APBA2 Silent p.P149P 0.49 TCGA-D3-A2JF-06 15 33952586 33952586 C T RYR3 Silent p.P1528P 0.40 TCGA-D3-A2JF-06 15 33954383 33954383 A T RYR3 Missense_Mutation p.Q1551L 0.17 benign(0.009) TCGA-D3-A2JF-06 15 33955849 33955849 C T RYR3 Missense_Mutation p.R1844C 0.33 probably_damaging(1) TCGA-D3-A2JF-06 15 34102840 34102840 G A RYR3 Missense_Mutation p.R3396Q 0.41 possibly_damaging(0.684) TCGA-D3-A2JF-06 15 34396305 34396305 C T PGBD4 Missense_Mutation p.P525S 0.41 tolerated(0.09) probably_damaging(0.971) TCGA-D3-A2JF-06 15 34648793 34648793 G A NUTM1 Missense_Mutation p.D834N 0.15 tolerated(0.22) benign(0.015) TCGA-D3-A2JF-06 15 39881501 39881501 C T THBS1 Silent p.F624F 0.36 TCGA-D3-A2JF-06 15 42454643 42454643 G A VPS39 Missense_Mutation p.P738S 0.20 deleterious(0.02) possibly_damaging(0.544) TCGA-D3-A2JF-06 15 42743379 42743379 G A ZNF106 Missense_Mutation p.A341V 0.41 tolerated(0.89) benign(0) TCGA-D3-A2JF-06 15 43670089 43670089 T C TUBGCP4 Silent p.I143I 0.34 TCGA-D3-A2JF-06 15 43891435 43891435 C T CKMT1B Silent p.I406I 0.36 TCGA-D3-A2JF-06 15 45567648 45567648 G A SLC28A2 Silent p.K638K 0.39 TCGA-D3-A2JF-06 15 45981326 45981326 C T SQRDL Silent p.T402T 0.36 TCGA-D3-A2JF-06 15 50515328 50515328 C T SLC27A2 Missense_Mutation p.A380V 0.30 deleterious(0.03) possibly_damaging(0.85) TCGA-D3-A2JF-06 15 50519205 50519205 C T SLC27A2 Silent p.I429I 0.22 TCGA-D3-A2JF-06 15 50535170 50535170 C T HDC Missense_Mutation p.E426K 0.33 tolerated(0.35) benign(0.132) TCGA-D3-A2JF-06 15 51514500 51514500 C T CYP19A1 Intron 0.36 TCGA-D3-A2JF-06 15 51697030 51697030 T A GLDN 3'UTR 0.35 TCGA-D3-A2JF-06 15 51837933 51837933 T A DMXL2 Silent p.S259S 0.29 TCGA-D3-A2JF-06 15 52486179 52486179 G A MYO5C Missense_Mutation p.P1717S 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 15 58306208 58306208 G A ALDH1A2 Intron 0.32 TCGA-D3-A2JF-06 15 59500176 59500176 A G LDHAL6B Missense_Mutation p.E346G 0.35 tolerated(0.15) benign(0.039) TCGA-D3-A2JF-06 15 67524189 67524189 C T AAGAB Silent p.L166L 0.35 TCGA-D3-A2JF-06 15 67664560 67664560 G A IQCH Missense_Mutation p.E289K 0.33 tolerated(0.14) benign(0.023) TCGA-D3-A2JF-06 15 73996299 73996299 C T CD276 Missense_Mutation p.R345W 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A2JF-06 15 74529059 74529059 G A CCDC33 5'UTR 0.17 TCGA-D3-A2JF-06 15 75044176 75044176 G A CYP1A2 Silent p.R341R 0.37 TCGA-D3-A2JF-06 15 75122642 75122642 C T CPLX3 Nonsense_Mutation p.Q142* 0.38 TCGA-D3-A2JF-06 15 75557487 75557487 C T GOLGA6C Missense_Mutation p.L197F 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-D3-A2JF-06 15 75694309 75694309 G A SIN3A Silent p.V470V 0.31 TCGA-D3-A2JF-06 15 76668600 76668600 G A SCAPER Missense_Mutation p.S1253F 0.44 tolerated(0.46) probably_damaging(0.998) TCGA-D3-A2JF-06 15 78567973 78567973 C T DNAJA4 Silent p.I289I 0.26 TCGA-D3-A2JF-06 15 79056047 79056047 C T ADAMTS7 Nonsense_Mutation p.W1578* 0.54 TCGA-D3-A2JF-06 15 79298659 79298659 C T RASGRF1 Silent p.T661T 0.44 TCGA-D3-A2JF-06 15 83440957 83440957 G A FSD2 Missense_Mutation p.P379S 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A2JF-06 15 85399733 85399733 G A ALPK3 Missense_Mutation p.M790I 0.41 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-D3-A2JF-06 15 85438652 85438652 C T SLC28A1 Intron 0.32 TCGA-D3-A2JF-06 15 88476403 88476403 G A NTRK3 Missense_Mutation p.P577S 0.37 tolerated(0.12) benign(0.18) TCGA-D3-A2JF-06 15 88678428 88678428 G T NTRK3 Missense_Mutation p.H370N 0.29 deleterious(0) probably_damaging(0.955) TCGA-D3-A2JF-06 15 88679836 88679836 A T NTRK3 Silent p.L209L 0.32 TCGA-D3-A2JF-06 15 89399064 89399064 G A ACAN Missense_Mutation p.G1083E 0.70 deleterious(0.03) unknown(0) TCGA-D3-A2JF-06 15 89422351 89422351 C T HAPLN3 Missense_Mutation p.G215S 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 15 93043759 93043759 G C C15orf32 3'UTR 0.40 TCGA-D3-A2JF-06 15 93496705 93496705 C T CHD2 Missense_Mutation p.P541S 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A2JF-06 16 1279649 1279649 G A TPSB2 Missense_Mutation p.R51C 0.15 tolerated(0.15) benign(0.008) TCGA-D3-A2JF-06 16 1652420 1652420 G A IFT140 Missense_Mutation p.T107I 0.37 tolerated(0.07) benign(0.241) TCGA-D3-A2JF-06 16 18841656 18841656 G A SMG1 Missense_Mutation p.P2943L 0.41 deleterious(0) benign(0.033) TCGA-D3-A2JF-06 16 19058440 19058440 G A TMC7 Missense_Mutation p.E537K 0.23 deleterious(0.02) possibly_damaging(0.483) TCGA-D3-A2JF-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.20 tolerated(0.08) benign(0.009) TCGA-D3-A2JF-06 16 20451807 20451807 C T ACSM5 3'UTR 0.25 TCGA-D3-A2JF-06 16 20570559 20570559 C T ACSM2B Missense_Mutation p.G130S 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 16 20959957 20959957 C T DNAH3 Missense_Mutation p.E3731K 0.16 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JF-06 16 21011622 21011622 G A DNAH3 Silent p.I2115I 0.34 TCGA-D3-A2JF-06 16 21051236 21051236 G A DNAH3 Silent p.V1556V 0.42 TCGA-D3-A2JF-06 16 21216882 21216882 C T ZP2 Nonsense_Mutation p.W184* 0.33 TCGA-D3-A2JF-06 16 22262479 22262479 C T EEF2K Missense_Mutation p.L152F 0.18 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 16 23382666 23382666 C T SCNN1B Silent p.F309F 0.42 TCGA-D3-A2JF-06 16 23424817 23424817 G A COG7 Missense_Mutation p.P454L 0.43 tolerated(0.3) benign(0.001) TCGA-D3-A2JF-06 16 23499999 23499999 C T GGA2 Silent p.V169V 0.19 TCGA-D3-A2JF-06 16 240043 240043 G A LUC7L Missense_Mutation p.R300W 0.19 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JF-06 16 24578678 24578678 C T RBBP6 Missense_Mutation p.P602S 0.45 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-D3-A2JF-06 16 24946955 24946956 GG T ARHGAP17 Frame_Shift_Del p.P577Tfs*21 0.18 TCGA-D3-A2JF-06 16 26147485 26147485 G A HS3ST4 Silent p.R429R 0.31 TCGA-D3-A2JF-06 16 27225028 27225028 C T KDM8 Silent p.I245I 0.46 TCGA-D3-A2JF-06 16 27225029 27225029 C T KDM8 Silent p.L246L 0.43 TCGA-D3-A2JF-06 16 28848212 28848212 G A ATXN2L 3'UTR 0.38 TCGA-D3-A2JF-06 16 28913330 28913330 G A ATP2A1 Silent p.E749E 0.11 TCGA-D3-A2JF-06 16 29851524 29851524 C T MVP Missense_Mutation p.P312L 0.14 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JF-06 16 3065605 3065605 C T CLDN6 Missense_Mutation p.A140T 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A2JF-06 16 3065768 3065768 G A CLDN6 Silent p.V85V 0.31 TCGA-D3-A2JF-06 16 30748938 30748938 C T SRCAP Missense_Mutation p.P2526L 0.40 unknown(0) TCGA-D3-A2JF-06 16 30977030 30977030 C T SETD1A Missense_Mutation p.P610S 0.46 benign(0.094) TCGA-D3-A2JF-06 16 30977031 30977031 C T SETD1A Missense_Mutation p.P610L 0.48 benign(0.01) TCGA-D3-A2JF-06 16 3117520 3117520 C T IL32 Intron 0.42 TCGA-D3-A2JF-06 16 31195177 31195177 A T FUS Splice_Site p.X64_splice 0.18 TCGA-D3-A2JF-06 16 31374047 31374047 G A ITGAX Silent p.R444R 0.48 TCGA-D3-A2JF-06 16 31429471 31429471 C T ITGAD Missense_Mutation p.R859C 0.14 deleterious(0.02) benign(0.035) TCGA-D3-A2JF-06 16 321457 321457 G A RGS11 Silent p.I230I 0.35 TCGA-D3-A2JF-06 16 33020522 33020522 C T IGHV3OR16-8 Silent p.F9F 0.23 TCGA-D3-A2JF-06 16 57718006 57718006 C T GPR97 Silent p.F348F 0.44 TCGA-D3-A2JF-06 16 57957262 57957262 C T CNGB1 Missense_Mutation p.D520N 0.28 tolerated(0.05) benign(0.067) TCGA-D3-A2JF-06 16 624572 624572 C T PIGQ Silent p.F166F 0.31 TCGA-D3-A2JF-06 16 71571480 71571480 C T CHST4 Silent p.P300P 0.59 TCGA-D3-A2JF-06 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.18 TCGA-D3-A2JF-06 16 76587306 76587306 C T CNTNAP4 Missense_Mutation p.P1117L 0.50 tolerated(0.29) benign(0.002) TCGA-D3-A2JF-06 16 77398171 77398171 C T ADAMTS18 Missense_Mutation p.E296K 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 16 77398172 77398172 C T ADAMTS18 Silent p.V295V 0.58 TCGA-D3-A2JF-06 16 78005753 78005753 G A VAT1L Missense_Mutation p.E362K 0.51 tolerated(0.05) possibly_damaging(0.906) TCGA-D3-A2JF-06 16 81142814 81142814 G A RNU6-1191P 5'Flank 0.67 TCGA-D3-A2JF-06 16 84256406 84256406 C T KCNG4 Missense_Mutation p.S326N 0.53 tolerated(0.98) benign(0.015) TCGA-D3-A2JF-06 16 84270875 84270875 G A KCNG4 Missense_Mutation p.P73S 0.52 tolerated(0.28) probably_damaging(0.999) TCGA-D3-A2JF-06 16 87678539 87678539 C T JPH3 Missense_Mutation p.P353L 0.50 tolerated(0.11) benign(0.015) TCGA-D3-A2JF-06 17 10304414 10304414 G A MYH8 Missense_Mutation p.S1068F 0.18 deleterious(0) possibly_damaging(0.677) TCGA-D3-A2JF-06 17 10314238 10314238 G A MYH8 Silent p.I481I 0.24 TCGA-D3-A2JF-06 17 10366261 10366261 G A MYH4 Missense_Mutation p.P310L 0.42 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JF-06 17 10404964 10404964 C T MYH1 Missense_Mutation p.E1099K 0.42 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A2JF-06 17 10424534 10424534 G A MYH2 3'UTR 0.21 TCGA-D3-A2JF-06 17 10558352 10558352 G A MYH3 Silent p.F10F 0.41 TCGA-D3-A2JF-06 17 11592929 11592929 G A DNAH9 Missense_Mutation p.E1264K 0.14 benign(0.002) TCGA-D3-A2JF-06 17 11631189 11631189 G A DNAH9 Missense_Mutation p.D1922N 0.12 probably_damaging(0.994) TCGA-D3-A2JF-06 17 16332214 16332214 C T TRPV2 Missense_Mutation p.A502V 0.29 deleterious(0.01) possibly_damaging(0.512) TCGA-D3-A2JF-06 17 17165341 17165341 A T COPS3 Nonsense_Mutation p.L234* 0.20 TCGA-D3-A2JF-06 17 18023654 18023654 G T MYO15A Nonsense_Mutation p.E514* 0.13 TCGA-D3-A2JF-06 17 29325916 29325916 C T RNF135 Missense_Mutation p.R336C 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 17 29652877 29652877 C A NF1 Nonsense_Mutation p.Y1625* 0.51 TCGA-D3-A2JF-06 17 2966231 2966231 G A OR1D5 Missense_Mutation p.T224I 0.11 deleterious(0.02) benign(0.152) TCGA-D3-A2JF-06 17 2995435 2995435 G A OR1D2 Missense_Mutation p.P286S 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JF-06 17 3101090 3101090 C T OR1A2 Missense_Mutation p.S93F 0.41 deleterious(0.03) benign(0.167) TCGA-D3-A2JF-06 17 31258670 31258670 G A TMEM98 Missense_Mutation p.D42N 0.65 tolerated(0.12) benign(0.134) TCGA-D3-A2JF-06 17 3144091 3144091 G A OR1D4 RNA 0.32 TCGA-D3-A2JF-06 17 3195020 3195020 G A OR3A1 Missense_Mutation p.P286L 0.41 deleterious(0) possibly_damaging(0.658) TCGA-D3-A2JF-06 17 3458127 3458127 C T TRPV3 Silent p.K6K 0.16 TCGA-D3-A2JF-06 17 3653727 3653727 G A ITGAE Missense_Mutation p.S648F 0.16 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JF-06 17 3653729 3653729 C A ITGAE Missense_Mutation p.M647I 0.16 tolerated(0.49) benign(0.004) TCGA-D3-A2JF-06 17 38029373 38029373 C T ZPBP2 Silent p.I234I 0.20 TCGA-D3-A2JF-06 17 38644978 38644978 G A TNS4 Missense_Mutation p.S228F 0.68 deleterious(0) probably_damaging(0.935) TCGA-D3-A2JF-06 17 38950197 38950197 G A KRT28 Silent p.H360H 0.61 TCGA-D3-A2JF-06 17 39616440 39616440 G A KRT32 Silent p.S423S 0.50 TCGA-D3-A2JF-06 17 39674908 39674908 C T KRT15 Missense_Mutation p.G58R 0.49 tolerated(0.15) unknown(0) TCGA-D3-A2JF-06 17 41020305 41020305 C T AOC4P RNA 0.75 TCGA-D3-A2JF-06 17 41958620 41958620 G A MPP2 Missense_Mutation p.P304L 0.46 tolerated(0.07) possibly_damaging(0.448) TCGA-D3-A2JF-06 17 42636526 42636526 G A FZD2 Nonsense_Mutation p.W490* 0.50 TCGA-D3-A2JF-06 17 42937402 42937402 G A EFTUD2 Silent p.F577F 0.57 TCGA-D3-A2JF-06 17 46629749 46629749 C T HOXB3 Missense_Mutation p.D30N 0.45 tolerated(0.43) benign(0.018) TCGA-D3-A2JF-06 17 4685923 4685923 C T TM4SF5 Silent p.F128F 0.43 TCGA-D3-A2JF-06 17 46863646 46863646 C T TTLL6 Missense_Mutation p.M547I 0.37 tolerated(0.19) benign(0) TCGA-D3-A2JF-06 17 4805156 4805156 C T C17orf107 3'UTR 0.23 TCGA-D3-A2JF-06 17 48697069 48697069 C T CACNA1G Missense_Mutation p.S1936F 0.26 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 17 5012230 5012230 G A ZNF232 Missense_Mutation p.P206S 0.43 tolerated(0.23) benign(0.012) TCGA-D3-A2JF-06 17 51900875 51900875 G A KIF2B Missense_Mutation p.E161K 0.35 deleterious(0.01) possibly_damaging(0.751) TCGA-D3-A2JF-06 17 5307546 5307546 G A NUP88 Silent p.S355S 0.24 TCGA-D3-A2JF-06 17 53797904 53797904 C T TMEM100 3'UTR 0.50 TCGA-D3-A2JF-06 17 56271442 56271442 C T EPX Missense_Mutation p.L195F 0.38 tolerated(0.14) benign(0.285) TCGA-D3-A2JF-06 17 56357780 56357780 G A MPO Silent p.S65S 0.41 TCGA-D3-A2JF-06 17 56573634 56573634 G A MTMR4 Silent p.P623P 0.37 TCGA-D3-A2JF-06 17 57057335 57057335 G A PPM1E Missense_Mutation p.G404E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 17 58121464 58121464 A C HEATR6 Missense_Mutation p.N1002K 0.29 tolerated(0.45) benign(0) TCGA-D3-A2JF-06 17 59485556 59485556 C T TBX2 Missense_Mutation p.P610S 0.22 deleterious(0.02) benign(0.121) TCGA-D3-A2JF-06 17 61497654 61497654 C T TANC2 Silent p.L1437L 0.48 TCGA-D3-A2JF-06 17 62489078 62489078 A T POLG2 Missense_Mutation p.L208H 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 17 6690673 6690673 G A FBXO39 Missense_Mutation p.E419K 0.24 tolerated(0.1) benign(0.05) TCGA-D3-A2JF-06 17 67020377 67020377 C T ABCA9 Silent p.L753L 0.30 TCGA-D3-A2JF-06 17 7004911 7004911 T G ASGR2 Missense_Mutation p.T307P 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A2JF-06 17 72281237 72281237 G A DNAI2 Nonsense_Mutation p.W81* 0.53 TCGA-D3-A2JF-06 17 72436157 72436157 C A GPRC5C Missense_Mutation p.T126N 0.21 tolerated(0.27) benign(0.098) TCGA-D3-A2JF-06 17 7247224 7247224 C T ACAP1 Silent p.G206G 0.46 TCGA-D3-A2JF-06 17 7296236 7296236 G A TMEM256-PLSCR3 Silent p.G181G 0.22 TCGA-D3-A2JF-06 17 74288614 74288614 G A QRICH2 Nonsense_Mutation p.Q566* 0.41 TCGA-D3-A2JF-06 17 7630451 7630451 C T DNAH2 Silent p.F80F 0.46 TCGA-D3-A2JF-06 17 76487643 76487643 G A DNAH17 Missense_Mutation p.S2170F 0.39 probably_damaging(0.998) TCGA-D3-A2JF-06 17 76800037 76800037 G A USP36 Missense_Mutation p.S747L 0.56 tolerated(0.13) benign(0.022) TCGA-D3-A2JF-06 17 78039341 78039341 G A CCDC40 Missense_Mutation p.A500T 0.42 tolerated(0.63) benign(0.011) TCGA-D3-A2JF-06 17 78445621 78445621 G A NPTX1 Nonsense_Mutation p.Q330* 0.40 TCGA-D3-A2JF-06 17 7915542 7915542 C T GUCY2D Silent p.L610L 0.31 TCGA-D3-A2JF-06 17 7917207 7917207 A T GUCY2D Missense_Mutation p.Q758L 0.23 deleterious(0.05) benign(0.122) TCGA-D3-A2JF-06 17 79225022 79225022 G A SLC38A10 Intron 0.36 TCGA-D3-A2JF-06 17 79650825 79650825 G A ARL16 Missense_Mutation p.R11C 0.25 deleterious_low_confidence(0) benign(0.097) TCGA-D3-A2JF-06 17 79650826 79650826 G A ARL16 Silent p.S10S 0.28 TCGA-D3-A2JF-06 17 7989454 7989454 G A ALOX12B Missense_Mutation p.P78S 0.29 tolerated(0.24) possibly_damaging(0.542) TCGA-D3-A2JF-06 17 80441709 80441709 C T NARF Intron 0.28 TCGA-D3-A2JF-06 17 8793303 8793303 G A PIK3R5 Silent p.F266F 0.25 TCGA-D3-A2JF-06 17 9497554 9497554 G A WDR16 Missense_Mutation p.S151N 0.15 tolerated(0.08) benign(0.26) TCGA-D3-A2JF-06 18 21494382 21494382 G A LAMA3 Silent p.R2446R 0.41 TCGA-D3-A2JF-06 18 21494383 21494383 G A LAMA3 Missense_Mutation p.D2447N 0.39 benign(0.045) TCGA-D3-A2JF-06 18 24496451 24496451 C T CHST9 Silent p.G368G 0.38 TCGA-D3-A2JF-06 18 28648105 28648105 C T DSC2 Missense_Mutation p.G861E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 18 28648980 28648980 G A DSC2 Silent p.S796S 0.15 TCGA-D3-A2JF-06 18 28712584 28712584 C T DSC1 Missense_Mutation p.A729T 0.34 tolerated(0.11) probably_damaging(1) TCGA-D3-A2JF-06 18 28725604 28725604 G A DSC1 Silent p.I303I 0.34 TCGA-D3-A2JF-06 18 28971154 28971154 C T DSG4 Silent p.F266F 0.34 TCGA-D3-A2JF-06 18 29453458 29453458 G A TRAPPC8 Missense_Mutation p.P666L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 18 30977158 30977158 C T CCDC178 Missense_Mutation p.E25K 0.24 tolerated(0.34) benign(0.005) TCGA-D3-A2JF-06 18 31537429 31537429 G A NOL4 Missense_Mutation p.S430F 0.33 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JF-06 18 34852987 34852987 G A CELF4 Missense_Mutation p.P314L 0.39 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A2JF-06 18 3597194 3597194 G A DLGAP1 Intron 0.16 TCGA-D3-A2JF-06 18 43464662 43464662 C T EPG5 Missense_Mutation p.E1742K 0.24 tolerated(0.1) probably_damaging(0.953) TCGA-D3-A2JF-06 18 43492290 43492290 G A EPG5 Silent p.F1316F 0.15 TCGA-D3-A2JF-06 18 44013385 44013385 C T RNF165 Silent p.F98F 0.26 TCGA-D3-A2JF-06 18 44027629 44027629 C T RNF165 Missense_Mutation p.P197S 0.39 tolerated(0.08) benign(0.062) TCGA-D3-A2JF-06 18 44560283 44560283 C T TCEB3B Silent p.P451P 0.25 TCGA-D3-A2JF-06 18 44561697 44561697 G A TCEB3B 5'UTR 0.46 TCGA-D3-A2JF-06 18 46447842 46447842 G A SMAD7 Missense_Mutation p.T394I 0.20 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 18 47765069 47765069 C T CCDC11 Missense_Mutation p.R407Q 0.30 deleterious(0) benign(0.2) TCGA-D3-A2JF-06 18 48256213 48256213 G A MAPK4 Missense_Mutation p.E585K 0.20 tolerated_low_confidence(0.09) benign(0.004) TCGA-D3-A2JF-06 18 48325577 48325577 C T MRO 3'UTR 0.40 TCGA-D3-A2JF-06 18 5406803 5406803 G A EPB41L3 Silent p.P774P 0.36 TCGA-D3-A2JF-06 18 57133983 57133983 G A CCBE1 Missense_Mutation p.P181S 0.16 tolerated(0.16) benign(0.219) TCGA-D3-A2JF-06 18 61304932 61304932 G A SERPINB4 3'UTR 0.27 TCGA-D3-A2JF-06 18 61463602 61463602 G A SERPINB7 Missense_Mutation p.E147K 0.23 tolerated(0.05) benign(0.052) TCGA-D3-A2JF-06 18 6873451 6873451 G A ARHGAP28 Missense_Mutation p.G174E 0.43 tolerated(0.06) benign(0.03) TCGA-D3-A2JF-06 18 71797846 71797846 G A FBXO15 Missense_Mutation p.S127L 0.46 tolerated(0.25) benign(0.03) TCGA-D3-A2JF-06 18 71920842 71920842 G A CYB5A Missense_Mutation p.R128C 0.39 tolerated(0.06) benign(0.028) TCGA-D3-A2JF-06 18 72999833 72999833 T C TSHZ1 Missense_Mutation p.V779A 0.43 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 18 77193719 77193719 G A NFATC1 Missense_Mutation p.G443E 0.43 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JF-06 18 9258459 9258459 C T ANKRD12 Missense_Mutation p.P1732S 0.29 deleterious(0) benign(0.259) TCGA-D3-A2JF-06 19 10089267 10089267 C T COL5A3 Missense_Mutation p.G1001R 0.54 probably_damaging(0.953) TCGA-D3-A2JF-06 19 10127869 10127869 C T RDH8 Silent p.I100I 0.43 TCGA-D3-A2JF-06 19 10428089 10428089 G A RAVER1 3'UTR 0.10 TCGA-D3-A2JF-06 19 10476393 10476393 C A TYK2 Missense_Mutation p.G271C 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2JF-06 19 10625118 10625118 G A S1PR5 Silent p.A190A 0.59 TCGA-D3-A2JF-06 19 1095392 1095392 G A POLR2E 5'UTR 0.21 TCGA-D3-A2JF-06 19 1279060 1279060 C T C19orf24 3'UTR 0.50 TCGA-D3-A2JF-06 19 12878872 12878872 G A HOOK2 Silent p.C390C 0.19 TCGA-D3-A2JF-06 19 13875344 13875344 C T MRI1 5'Flank 0.54 TCGA-D3-A2JF-06 19 14139030 14139030 T G RLN3 Missense_Mutation p.M5R 0.30 tolerated_low_confidence(0.58) benign(0) TCGA-D3-A2JF-06 19 14710880 14710880 C T CLEC17A Silent p.P260P 0.49 TCGA-D3-A2JF-06 19 15072871 15072871 C T SLC1A6 Missense_Mutation p.R293K 0.11 tolerated(0.47) benign(0.004) TCGA-D3-A2JF-06 19 15072963 15072963 G A SLC1A6 Silent p.S262S 0.21 TCGA-D3-A2JF-06 19 15547739 15547739 G A WIZ Missense_Mutation p.P136L 0.22 tolerated(0.06) benign(0.002) TCGA-D3-A2JF-06 19 15547879 15547879 G A WIZ Silent p.F89F 0.13 TCGA-D3-A2JF-06 19 15586707 15586707 A G PGLYRP2 Silent p.F258F 0.60 TCGA-D3-A2JF-06 19 15651440 15651440 G A CYP4F22 Missense_Mutation p.R284Q 0.22 tolerated(0.31) benign(0.007) TCGA-D3-A2JF-06 19 16060468 16060468 C T OR10H4 Silent p.I217I 0.19 TCGA-D3-A2JF-06 19 16268549 16268549 G A HSH2D 3'Flank 0.48 TCGA-D3-A2JF-06 19 16860660 16860660 C T NWD1 Missense_Mutation p.P403S 0.08 tolerated(0.18) benign(0.058) TCGA-D3-A2JF-06 19 17367438 17367438 G A USHBP1 Silent p.L438L 0.26 TCGA-D3-A2JF-06 19 17397294 17397294 C T ANKLE1 Missense_Mutation p.A594V 0.26 deleterious(0) probably_damaging(0.925) TCGA-D3-A2JF-06 19 19360735 19360735 G A NCAN 3'UTR 0.25 TCGA-D3-A2JF-06 19 21476007 21476007 G A ZNF708 3'UTR 0.22 TCGA-D3-A2JF-06 19 22364296 22364296 C T ZNF676 Missense_Mutation p.G75R 0.22 tolerated(0.06) benign(0.004) TCGA-D3-A2JF-06 19 22939845 22939845 G A ZNF99 3'Flank 0.35 TCGA-D3-A2JF-06 19 22941277 22941277 C T ZNF99 Silent p.E478E 0.54 TCGA-D3-A2JF-06 19 22942275 22942275 G A ZNF99 Nonsense_Mutation p.Q146* 0.23 TCGA-D3-A2JF-06 19 22942280 22942280 A C ZNF99 Missense_Mutation p.I144R 0.24 tolerated(0.15) possibly_damaging(0.717) TCGA-D3-A2JF-06 19 282248 282248 G A PPAP2C Silent p.F222F 0.20 TCGA-D3-A2JF-06 19 2853297 2853297 C T ZNF555 Nonsense_Mutation p.R412* 0.66 TCGA-D3-A2JF-06 19 3193344 3193344 C T NCLN Silent p.A146A 0.10 TCGA-D3-A2JF-06 19 34833032 34833032 C T KIAA0355 Silent p.V731V 0.25 TCGA-D3-A2JF-06 19 35551587 35551587 C T HPN Missense_Mutation p.S226F 0.26 deleterious(0.03) possibly_damaging(0.661) TCGA-D3-A2JF-06 19 35941362 35941362 G A FFAR2 Missense_Mutation p.R249K 0.20 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 19 36110967 36110967 C T HAUS5 Missense_Mutation p.S487F 0.19 deleterious(0.01) benign(0.293) TCGA-D3-A2JF-06 19 36110968 36110968 C T HAUS5 Silent p.S487S 0.19 TCGA-D3-A2JF-06 19 36159310 36159310 G A UPK1A Intron 0.35 TCGA-D3-A2JF-06 19 36222806 36222806 C T KMT2B Intron 0.28 TCGA-D3-A2JF-06 19 36236335 36236335 C T PSENEN 5'UTR 0.29 TCGA-D3-A2JF-06 19 3639013 3639013 C T PIP5K1C Missense_Mutation p.V597M 0.59 tolerated_low_confidence(0.24) benign(0.004) TCGA-D3-A2JF-06 19 3762665 3762665 G A MRPL54 5'UTR 0.48 TCGA-D3-A2JF-06 19 38817347 38817347 C T KCNK6 Missense_Mutation p.S146L 0.19 tolerated(0.55) benign(0.018) TCGA-D3-A2JF-06 19 38969230 38969230 C T RYR1 Missense_Mutation p.T1537I 0.18 probably_damaging(1) TCGA-D3-A2JF-06 19 39819216 39819216 G A GMFG Intron 0.21 TCGA-D3-A2JF-06 19 39914776 39914776 C T PLEKHG2 Silent p.S1001S 0.39 TCGA-D3-A2JF-06 19 40222069 40222069 C T CLC Nonsense_Mutation p.W127* 0.43 TCGA-D3-A2JF-06 19 40363045 40363045 C T FCGBP Missense_Mutation p.E5009K 0.22 possibly_damaging(0.599) TCGA-D3-A2JF-06 19 40395962 40395962 G A FCGBP Silent p.L2479L 0.36 TCGA-D3-A2JF-06 19 41765576 41765576 G A AXL Missense_Mutation p.E818K 0.14 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A2JF-06 19 41785031 41785031 C T HNRNPUL1 Missense_Mutation p.P279L 0.41 tolerated(0.08) unknown(0) TCGA-D3-A2JF-06 19 42703977 42703977 G A DEDD2 Silent p.I198I 0.25 TCGA-D3-A2JF-06 19 42863023 42863023 G A MEGF8 Missense_Mutation p.E1687K 0.15 tolerated_low_confidence(0.83) benign(0.005) TCGA-D3-A2JF-06 19 42891524 42891524 G A CNFN Missense_Mutation p.R73C 0.75 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 19 43523042 43523042 C T PSG11 Missense_Mutation p.E197K 0.70 tolerated(0.93) benign(0.003) TCGA-D3-A2JF-06 19 43762199 43762199 T C PSG9 Intron 0.24 TCGA-D3-A2JF-06 19 43763157 43763157 G A PSG9 Silent p.L280L 0.22 TCGA-D3-A2JF-06 19 43920619 43920619 C T TEX101 Silent p.I119I 0.45 TCGA-D3-A2JF-06 19 44777860 44777860 G A ZNF233 Silent p.R349R 0.17 TCGA-D3-A2JF-06 19 44832673 44832673 G A ZNF112 Missense_Mutation p.P552L 0.15 tolerated(0.1) probably_damaging(0.951) TCGA-D3-A2JF-06 19 44833912 44833912 G A ZNF112 Missense_Mutation p.S139F 0.12 tolerated(0.06) benign(0.003) TCGA-D3-A2JF-06 19 4529273 4529273 G A PLIN5 Intron 0.48 TCGA-D3-A2JF-06 19 45490630 45490630 C T CLPTM1 Silent p.F329F 0.23 TCGA-D3-A2JF-06 19 4558145 4558145 G A SEMA6B Silent p.P46P 0.63 TCGA-D3-A2JF-06 19 45805651 45805651 C T MARK4 Nonsense_Mutation p.Q648* 0.45 TCGA-D3-A2JF-06 19 46973182 46973182 G A PNMAL1 Missense_Mutation p.P371S 0.18 tolerated(0.13) possibly_damaging(0.803) TCGA-D3-A2JF-06 19 47423091 47423091 C T ARHGAP35 Missense_Mutation p.P387S 0.18 tolerated(0.14) probably_damaging(0.999) TCGA-D3-A2JF-06 19 47492896 47492896 C T ARHGAP35 Missense_Mutation p.P1334S 0.27 tolerated(0.16) probably_damaging(0.999) TCGA-D3-A2JF-06 19 47969297 47969297 G A SLC8A2 Missense_Mutation p.R122C 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 19 48519292 48519292 G A ELSPBP1 Silent p.T117T 0.17 TCGA-D3-A2JF-06 19 48537570 48537570 G A CABP5 Missense_Mutation p.A133V 0.20 tolerated(0.33) probably_damaging(0.993) TCGA-D3-A2JF-06 19 49013363 49013363 G A LMTK3 Missense_Mutation p.S122F 0.31 probably_damaging(0.963) TCGA-D3-A2JF-06 19 49142237 49142237 G A CA11 Missense_Mutation p.P290L 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 19 49793485 49793485 G A SLC6A16 Silent p.S702S 0.37 TCGA-D3-A2JF-06 19 49841245 49841245 G T CD37 Nonsense_Mutation p.E136* 0.09 TCGA-D3-A2JF-06 19 49878086 49878086 G A DKKL1 Missense_Mutation p.R177Q 0.19 tolerated_low_confidence(0.23) benign(0.069) TCGA-D3-A2JF-06 19 49878087 49878087 G A DKKL1 Silent p.R177R 0.21 TCGA-D3-A2JF-06 19 50154705 50154705 C T SCAF1 Silent p.F353F 0.38 TCGA-D3-A2JF-06 19 50436267 50436267 C T ATF5 Missense_Mutation p.S256F 0.23 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 19 51530831 51530831 C T KLK11 5'UTR 0.24 TCGA-D3-A2JF-06 19 52147238 52147238 G A SIGLEC14 Missense_Mutation p.S269F 0.32 tolerated(0.18) benign(0.033) TCGA-D3-A2JF-06 19 52149080 52149080 C T SIGLEC14 Missense_Mutation p.G219R 0.44 tolerated(0.06) benign(0.38) TCGA-D3-A2JF-06 19 5215581 5215581 G A PTPRS Silent p.P1374P 0.14 TCGA-D3-A2JF-06 19 52327442 52327442 G A FPR3 Silent p.T147T 0.43 TCGA-D3-A2JF-06 19 53384142 53384142 A G ZNF320 Missense_Mutation p.Y413H 0.50 deleterious(0.02) possibly_damaging(0.907) TCGA-D3-A2JF-06 19 53762620 53762620 C A VN1R2 Missense_Mutation p.S331Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 19 53762621 53762621 C T VN1R2 Silent p.S331S 0.36 TCGA-D3-A2JF-06 19 54745902 54745902 C T LILRA6 Missense_Mutation p.G119R 0.24 deleterious(0.02) probably_damaging(0.926) TCGA-D3-A2JF-06 19 55106227 55106227 G A LILRA1 Silent p.Q56Q 0.29 TCGA-D3-A2JF-06 19 55221950 55221950 G A AC098784.2 3'Flank 0.18 TCGA-D3-A2JF-06 19 55255387 55255387 C T KIR2DL3 Missense_Mutation p.S172F 0.15 deleterious(0.01) benign(0.426) TCGA-D3-A2JF-06 19 55263930 55263930 G A KIR2DL3 Missense_Mutation p.D329N 0.18 tolerated(0.06) probably_damaging(0.98) TCGA-D3-A2JF-06 19 55399690 55399690 C T FCAR Intron 0.29 TCGA-D3-A2JF-06 19 55686338 55686338 G A SYT5 Silent p.S246S 0.38 TCGA-D3-A2JF-06 19 55715400 55715400 C T PTPRH Silent p.R212R 0.21 TCGA-D3-A2JF-06 19 56321559 56321559 G T NLRP11 Silent p.T139T 0.30 TCGA-D3-A2JF-06 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.19 TCGA-D3-A2JF-06 19 56423853 56423853 C T NLRP13 Missense_Mutation p.D444N 0.40 tolerated(0.36) benign(0.024) TCGA-D3-A2JF-06 19 56515323 56515323 G A NLRP5 Missense_Mutation p.E102K 0.31 tolerated(0.38) benign(0.008) TCGA-D3-A2JF-06 19 56515418 56515418 G A NLRP5 Missense_Mutation p.M133I 0.17 deleterious(0) probably_damaging(0.963) TCGA-D3-A2JF-06 19 56539409 56539409 G A NLRP5 Missense_Mutation p.E604K 0.34 tolerated(0.28) benign(0.028) TCGA-D3-A2JF-06 19 56696603 56696603 G A GALP Missense_Mutation p.M105I 0.52 tolerated_low_confidence(0.08) benign(0) TCGA-D3-A2JF-06 19 57286029 57286029 A T ZIM2 3'UTR 0.51 TCGA-D3-A2JF-06 19 57328375 57328375 G A PEG3 Missense_Mutation p.L479F 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A2JF-06 19 57640962 57640962 C T USP29 Missense_Mutation p.P307S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 19 57641952 57641952 G A USP29 Missense_Mutation p.D637N 0.30 tolerated(0.4) benign(0.326) TCGA-D3-A2JF-06 19 57642372 57642372 C T USP29 Nonsense_Mutation p.Q777* 0.35 TCGA-D3-A2JF-06 19 57649879 57649879 C T ZIM3 Missense_Mutation p.D35N 0.15 tolerated(0.12) possibly_damaging(0.556) TCGA-D3-A2JF-06 19 5866551 5866551 C T FUT5 3'UTR 0.08 TCGA-D3-A2JF-06 19 58805842 58805842 C T ZNF8 Missense_Mutation p.S223F 0.48 tolerated(0.14) benign(0.023) TCGA-D3-A2JF-06 19 59025623 59025623 T C ZBTB45 Missense_Mutation p.Y445C 0.37 tolerated(0.05) benign(0.021) TCGA-D3-A2JF-06 19 6222317 6222317 G A MLLT1 Missense_Mutation p.R309W 0.16 tolerated(0.16) possibly_damaging(0.689) TCGA-D3-A2JF-06 19 651732 651732 G A RNF126 Missense_Mutation p.P108S 0.14 tolerated(0.34) benign(0.013) TCGA-D3-A2JF-06 19 7174710 7174710 G A INSR Missense_Mutation p.P336L 0.51 tolerated(0.11) benign(0.095) TCGA-D3-A2JF-06 19 758448 758448 G A MISP Nonsense_Mutation p.W501* 0.57 TCGA-D3-A2JF-06 19 8562714 8562714 C T PRAM1 Missense_Mutation p.E504K 0.18 deleterious(0.01) possibly_damaging(0.48) TCGA-D3-A2JF-06 19 8841864 8841864 C T OR2Z1 Silent p.I158I 0.66 TCGA-D3-A2JF-06 19 8994476 8994476 C T MUC16 Missense_Mutation p.E13806K 0.45 possibly_damaging(0.903) TCGA-D3-A2JF-06 19 9046026 9046026 G A MUC16 Missense_Mutation p.L11869F 0.13 benign(0.039) TCGA-D3-A2JF-06 19 9046272 9046272 G A MUC16 Missense_Mutation p.P11787S 0.39 benign(0.101) TCGA-D3-A2JF-06 19 9060378 9060378 G A MUC16 Missense_Mutation p.P9023L 0.14 unknown(0) TCGA-D3-A2JF-06 19 9060904 9060904 C T MUC16 Missense_Mutation p.E8848K 0.63 unknown(0) TCGA-D3-A2JF-06 19 9061715 9061715 G A MUC16 Silent p.S8577S 0.24 TCGA-D3-A2JF-06 19 9064221 9064221 G A MUC16 Missense_Mutation p.S7742L 0.16 unknown(0) TCGA-D3-A2JF-06 19 9075654 9075654 C T MUC16 Missense_Mutation p.R3931K 0.28 unknown(0) TCGA-D3-A2JF-06 19 9084930 9084930 C T MUC16 Nonsense_Mutation p.W2295* 0.47 TCGA-D3-A2JF-06 19 9089082 9089082 G A MUC16 Silent p.F911F 0.10 TCGA-D3-A2JF-06 19 9089737 9089737 C T MUC16 Missense_Mutation p.G693E 0.59 unknown(0) TCGA-D3-A2JF-06 19 9091597 9091597 C T MUC16 Missense_Mutation p.G73E 0.21 unknown(0) TCGA-D3-A2JF-06 19 9296779 9296779 C T OR7D2 Missense_Mutation p.P108S 0.19 tolerated_low_confidence(0.22) benign(0.002) TCGA-D3-A2JF-06 19 9362659 9362659 G A OR7E24 Missense_Mutation p.D314N 0.61 deleterious(0.01) benign(0.167) TCGA-D3-A2JF-06 19 9965321 9965321 C T OLFM2 Silent p.R302R 0.55 TCGA-D3-A2JF-06 1 100535202 100535202 G T HIAT1 Silent p.A284A 0.22 TCGA-D3-A2JF-06 1 10403297 10403297 C T KIF1B Nonsense_Mutation p.Q1168* 0.25 TCGA-D3-A2JF-06 1 10713766 10713766 G A CASZ1 Missense_Mutation p.S783L 0.49 deleterious_low_confidence(0) benign(0.373) TCGA-D3-A2JF-06 1 110022028 110022028 G A SYPL2 Nonsense_Mutation p.W226* 0.23 TCGA-D3-A2JF-06 1 110022250 110022250 C T SYPL2 3'UTR 0.46 TCGA-D3-A2JF-06 1 110551662 110551662 C T AHCYL1 Nonsense_Mutation p.Q43* 0.41 TCGA-D3-A2JF-06 1 111061365 111061365 A G KCNA10 Silent p.N15N 0.42 TCGA-D3-A2JF-06 1 111061366 111061366 T C KCNA10 Missense_Mutation p.N15S 0.44 tolerated_low_confidence(0.17) benign(0.007) TCGA-D3-A2JF-06 1 11118916 11118916 G A SRM Silent p.L108L 0.45 TCGA-D3-A2JF-06 1 111216419 111216419 G A KCNA3 Missense_Mutation p.P338L 0.42 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 1 11300507 11300507 G A MTOR Missense_Mutation p.L547F 0.51 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 1 115226943 115226943 G A AMPD1 Missense_Mutation p.R175W 0.45 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JF-06 1 115537408 115537408 G A SYCP1 Silent p.K931K 0.33 TCGA-D3-A2JF-06 1 117509537 117509537 C T PTGFRN Silent p.S548S 0.29 TCGA-D3-A2JF-06 1 119474335 119474335 G A TBX15 Missense_Mutation p.S3F 0.24 deleterious(0) probably_damaging(0.949) TCGA-D3-A2JF-06 1 119927624 119927624 G A HAO2 Missense_Mutation p.R170Q 0.34 deleterious(0.02) benign(0.018) TCGA-D3-A2JF-06 1 119934865 119934865 C T HAO2 Missense_Mutation p.P302S 0.18 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JF-06 1 120497716 120497716 G C NOTCH2 Missense_Mutation p.N722K 0.44 deleterious(0) benign(0.131) TCGA-D3-A2JF-06 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.19 tolerated(0.05) benign(0.028) TCGA-D3-A2JF-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.18 tolerated(0.14) benign(0.015) TCGA-D3-A2JF-06 1 13001182 13001182 G A PRAMEF6 Silent p.L167L 0.16 TCGA-D3-A2JF-06 1 13036403 13036403 G A PRAMEF22 Missense_Mutation p.E159K 0.37 tolerated(0.35) benign(0.046) TCGA-D3-A2JF-06 1 146726560 146726560 A T CHD1L Missense_Mutation p.L92F 0.41 tolerated(0.13) possibly_damaging(0.873) TCGA-D3-A2JF-06 1 150471438 150471438 C T TARS2 Silent p.S489S 0.56 TCGA-D3-A2JF-06 1 151110475 151110475 G A SEMA6C Silent p.S218S 0.40 TCGA-D3-A2JF-06 1 151536460 151536460 C T TUFT1 Silent p.I106I 0.30 TCGA-D3-A2JF-06 1 151536461 151536461 C T TUFT1 Nonsense_Mutation p.Q107* 0.30 TCGA-D3-A2JF-06 1 151733957 151733957 A T MRPL9 Silent p.P186P 0.24 TCGA-D3-A2JF-06 1 151733958 151733958 G A MRPL9 Missense_Mutation p.P186L 0.24 deleterious(0.01) benign(0.091) TCGA-D3-A2JF-06 1 151787050 151787050 C T RORC Silent p.K311K 0.37 TCGA-D3-A2JF-06 1 152059754 152059754 G A TCHHL1 Missense_Mutation p.P135L 0.54 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JF-06 1 152059796 152059796 C T TCHHL1 Nonsense_Mutation p.W121* 0.24 TCGA-D3-A2JF-06 1 152081679 152081679 G A TCHH Silent p.F1338F 0.23 TCGA-D3-A2JF-06 1 152128229 152128229 G A RPTN Missense_Mutation p.S449F 0.40 deleterious(0) benign(0.426) TCGA-D3-A2JF-06 1 152326252 152326252 G A FLG2 Missense_Mutation p.S1337F 0.25 benign(0.34) TCGA-D3-A2JF-06 1 152329347 152329347 C T FLG2 Silent p.G305G 0.46 TCGA-D3-A2JF-06 1 152484100 152484100 C A LCE5A Silent p.P30P 0.36 TCGA-D3-A2JF-06 1 152882344 152882344 C T IVL Missense_Mutation p.P24L 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A2JF-06 1 152975752 152975752 C T SPRR3 Missense_Mutation p.P86S 0.27 deleterious(0.04) benign(0.334) TCGA-D3-A2JF-06 1 153634747 153634747 G A ILF2 3'UTR 0.46 TCGA-D3-A2JF-06 1 153974234 153974234 C T NUP210L Missense_Mutation p.D1720N 0.43 tolerated(0.36) benign(0.283) TCGA-D3-A2JF-06 1 154544000 154544000 C T CHRNB2 Missense_Mutation p.P234L 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 1 154680372 154680372 C T KCNN3 3'UTR 0.20 TCGA-D3-A2JF-06 1 155851143 155851143 C T SYT11 Silent p.L380L 0.43 TCGA-D3-A2JF-06 1 156937781 156937781 G A ARHGEF11 Nonsense_Mutation p.Q321* 0.20 TCGA-D3-A2JF-06 1 157509071 157509071 C T FCRL5 Missense_Mutation p.A403T 0.33 tolerated(0.21) possibly_damaging(0.629) TCGA-D3-A2JF-06 1 15752469 15752469 C T EFHD2 Silent p.I137I 0.43 TCGA-D3-A2JF-06 1 157801632 157801632 G A CD5L 3'UTR 0.36 TCGA-D3-A2JF-06 1 157801633 157801633 G A CD5L 3'UTR 0.35 TCGA-D3-A2JF-06 1 157805889 157805889 C T CD5L Missense_Mutation p.E38K 0.18 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JF-06 1 158260952 158260952 C T CD1C Silent p.V30V 0.21 TCGA-D3-A2JF-06 1 158261902 158261902 C T CD1C Silent p.G119G 0.22 TCGA-D3-A2JF-06 1 158262441 158262441 G T CD1C Missense_Mutation p.L222F 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A2JF-06 1 158548718 158548718 C T OR10X1 Silent p.L324L 0.39 TCGA-D3-A2JF-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.44 deleterious(0.05) benign(0.008) TCGA-D3-A2JF-06 1 159175263 159175263 C T DARC Missense_Mutation p.P14S 0.39 tolerated(0.61) benign(0.006) TCGA-D3-A2JF-06 1 159175264 159175264 C T DARC Missense_Mutation p.P14L 0.40 tolerated(0.74) benign(0.004) TCGA-D3-A2JF-06 1 159410507 159410507 C T OR10J1 Missense_Mutation p.S320F 0.34 deleterious(0) probably_damaging(0.914) TCGA-D3-A2JF-06 1 159558247 159558247 G A APCS Missense_Mutation p.G141S 0.42 deleterious(0) possibly_damaging(0.829) TCGA-D3-A2JF-06 1 159779412 159779412 C T FCRL6 Silent p.S275S 0.14 TCGA-D3-A2JF-06 1 159923341 159923341 A G SLAMF9 Missense_Mutation p.V50A 0.22 deleterious(0) benign(0.43) TCGA-D3-A2JF-06 1 160921002 160921002 C T ITLN2 Nonsense_Mutation p.W91* 0.43 TCGA-D3-A2JF-06 1 161254237 161254237 G A PCP4L1 Missense_Mutation p.R58Q 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-D3-A2JF-06 1 161284176 161284176 C T SDHC 5'UTR 0.64 TCGA-D3-A2JF-06 1 161953993 161953993 G A OLFML2B Silent p.F575F 0.12 TCGA-D3-A2JF-06 1 165513898 165513898 C T LRRC52 Missense_Mutation p.S122L 0.49 deleterious(0.01) possibly_damaging(0.612) TCGA-D3-A2JF-06 1 166904678 166904678 G A ILDR2 Missense_Mutation p.P247L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 167341173 167341173 C T POU2F1 Missense_Mutation p.S101L 0.44 tolerated_low_confidence(0.08) unknown(0) TCGA-D3-A2JF-06 1 167666794 167666794 G A RCSD1 Missense_Mutation p.M311I 0.18 tolerated(0.18) benign(0.089) TCGA-D3-A2JF-06 1 169510193 169510193 G A F5 Missense_Mutation p.L1379F 0.19 tolerated_low_confidence(0.48) benign(0.056) TCGA-D3-A2JF-06 1 169586505 169586505 T C SELP Missense_Mutation p.K81R 0.24 tolerated(0.4) benign(0.003) TCGA-D3-A2JF-06 1 169701994 169701994 G A SELE Silent p.S61S 0.44 TCGA-D3-A2JF-06 1 171252334 171252334 G A FMO1 Missense_Mutation p.R412K 0.13 tolerated(1) benign(0.015) TCGA-D3-A2JF-06 1 172348180 172348180 A G DNM3 Missense_Mutation p.Q639R 0.33 tolerated(0.41) benign(0.326) TCGA-D3-A2JF-06 1 172348182 172348182 G A DNM3 Missense_Mutation p.A640T 0.32 tolerated(0.35) benign(0.01) TCGA-D3-A2JF-06 1 175365860 175365860 C T TNR Missense_Mutation p.E354K 0.44 deleterious(0.02) probably_damaging(0.932) TCGA-D3-A2JF-06 1 175372652 175372652 C T TNR Silent p.S200S 0.24 TCGA-D3-A2JF-06 1 175375427 175375427 C T TNR Missense_Mutation p.E142K 0.51 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 1 176833438 176833438 C T ASTN1 Silent p.G1289G 0.17 TCGA-D3-A2JF-06 1 176993856 176993856 C T ASTN1 Missense_Mutation p.R378Q 0.27 tolerated(0.08) probably_damaging(0.994) TCGA-D3-A2JF-06 1 177249609 177249609 C T BRINP2 Missense_Mutation p.P433S 0.42 tolerated(0.4) benign(0.039) TCGA-D3-A2JF-06 1 17755626 17755626 G A RCC2 Nonsense_Mutation p.R119* 0.36 TCGA-D3-A2JF-06 1 179077499 179077499 G A ABL2 Missense_Mutation p.S968F 0.25 deleterious_low_confidence(0.01) benign(0.372) TCGA-D3-A2JF-06 1 179632519 179632519 G A TDRD5 Missense_Mutation p.D848N 0.31 deleterious(0.01) probably_damaging(0.913) TCGA-D3-A2JF-06 1 181705550 181705550 C T CACNA1E Silent p.F1134F 0.56 TCGA-D3-A2JF-06 1 185878601 185878601 A G HMCN1 Missense_Mutation p.S252G 0.36 possibly_damaging(0.827) TCGA-D3-A2JF-06 1 186413436 186413436 T G PDC Missense_Mutation p.H139P 0.49 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JF-06 1 190234018 190234018 G A BRINP3 Nonsense_Mutation p.Q199* 0.27 TCGA-D3-A2JF-06 1 190424010 190424010 C T BRINP3 Missense_Mutation p.R4Q 0.17 tolerated_low_confidence(0.14) benign(0) TCGA-D3-A2JF-06 1 196436863 196436863 C T KCNT2 Nonsense_Mutation p.W171* 0.35 TCGA-D3-A2JF-06 1 196645183 196645183 C T CFH Missense_Mutation p.P139S 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 196883786 196883786 T A CFHR4 Missense_Mutation p.F447I 0.33 tolerated(0.47) benign(0) TCGA-D3-A2JF-06 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.35 tolerated(0.27) possibly_damaging(0.788) TCGA-D3-A2JF-06 1 196927075 196927075 C T CFHR2 Missense_Mutation p.S162L 0.19 deleterious(0) possibly_damaging(0.819) TCGA-D3-A2JF-06 1 196953216 196953216 A T CFHR5 Missense_Mutation p.I127F 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 197008465 197008465 T C F13B 3'UTR 0.40 TCGA-D3-A2JF-06 1 197093454 197093454 A T ASPM Missense_Mutation p.I1059N 0.50 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JF-06 1 197390790 197390790 C T CRB1 Missense_Mutation p.S611F 0.52 deleterious(0.03) possibly_damaging(0.885) TCGA-D3-A2JF-06 1 200012959 200012959 C T NR5A2 Missense_Mutation p.P87L 0.18 tolerated(0.09) benign(0.222) TCGA-D3-A2JF-06 1 200956195 200956195 G A KIF21B Silent p.F1181F 0.41 TCGA-D3-A2JF-06 1 201029893 201029893 G A CACNA1S Missense_Mutation p.P1103S 0.19 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JF-06 1 201330324 201330324 G A TNNT2 Intron 0.26 TCGA-D3-A2JF-06 1 202163199 202163199 C T LGR6 Missense_Mutation p.P28S 0.38 tolerated(0.5) unknown(0) TCGA-D3-A2JF-06 1 20302188 20302188 G A PLA2G2A 3'UTR 0.22 TCGA-D3-A2JF-06 1 203696697 203696697 C T ATP2B4 Nonsense_Mutation p.Q1103* 0.32 TCGA-D3-A2JF-06 1 203734720 203734720 G A LAX1 Silent p.S9S 0.43 TCGA-D3-A2JF-06 1 204588393 204588393 G A LRRN2 Missense_Mutation p.S243F 0.31 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JF-06 1 20517570 20517570 G A UBXN10 Silent p.R172R 0.48 TCGA-D3-A2JF-06 1 205306717 205306717 T C KLHDC8A Missense_Mutation p.N288S 0.26 deleterious(0.01) possibly_damaging(0.897) TCGA-D3-A2JF-06 1 205764127 205764127 G A SLC41A1 Silent p.A409A 0.41 TCGA-D3-A2JF-06 1 206317531 206317531 G A CTSE 5'UTR 0.22 TCGA-D3-A2JF-06 1 207758206 207758206 C T CR1 Missense_Mutation p.L1839F 0.19 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A2JF-06 1 209605553 209605553 C T MIR205HG RNA 0.29 TCGA-D3-A2JF-06 1 209879239 209879239 G A HSD11B1 Missense_Mutation p.G58R 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 1 209963962 209963962 G A IRF6 Missense_Mutation p.A313V 0.39 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JF-06 1 21151665 21151665 C T EIF4G3 Nonsense_Mutation p.W1382* 0.24 TCGA-D3-A2JF-06 1 213186679 213186679 C T ANGEL2 Nonsense_Mutation p.W47* 0.42 TCGA-D3-A2JF-06 1 21890667 21890667 G A ALPL Silent p.K202K 0.40 TCGA-D3-A2JF-06 1 220363796 220363796 C T RAB3GAP2 Silent p.Q518Q 0.33 TCGA-D3-A2JF-06 1 220953377 220953377 C T MARC2 Silent p.L256L 0.45 TCGA-D3-A2JF-06 1 221875829 221875829 G A DUSP10 Silent p.F458F 0.23 TCGA-D3-A2JF-06 1 222860965 222860965 G A AIDA Missense_Mutation p.P109S 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 223176405 223176405 C T DISP1 Missense_Mutation p.P556S 0.21 deleterious(0) possibly_damaging(0.882) TCGA-D3-A2JF-06 1 223178038 223178038 C T DISP1 Missense_Mutation p.S1100F 0.46 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 1 225742694 225742694 C T ENAH Missense_Mutation p.G88D 0.46 deleterious(0) unknown(0) TCGA-D3-A2JF-06 1 228003886 228003886 C T PRSS38 Missense_Mutation p.L82F 0.19 tolerated(1) benign(0.005) TCGA-D3-A2JF-06 1 22834596 22834596 C T ZBTB40 Missense_Mutation p.S488L 0.29 deleterious(0.02) unknown(0) TCGA-D3-A2JF-06 1 230840018 230840018 G A AGT Missense_Mutation p.A397V 0.42 tolerated(0.05) benign(0.333) TCGA-D3-A2JF-06 1 23219430 23219430 C T EPHB2 Silent p.T494T 0.47 TCGA-D3-A2JF-06 1 233394658 233394658 G A PCNXL2 Missense_Mutation p.T317I 0.19 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-D3-A2JF-06 1 235324590 235324590 C T RBM34 5'UTR 0.14 TCGA-D3-A2JF-06 1 240072057 240072057 G A CHRM3 Missense_Mutation p.D436N 0.50 tolerated(0.37) benign(0.102) TCGA-D3-A2JF-06 1 240635691 240635691 G C FMN2 Missense_Mutation p.V1694L 0.15 benign(0.035) TCGA-D3-A2JF-06 1 241031932 241031932 G A RGS7 Silent p.I188I 0.22 TCGA-D3-A2JF-06 1 242253362 242253362 G A PLD5 Missense_Mutation p.L469F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 243328040 243328040 C T CEP170 Silent p.T1074T 0.13 TCGA-D3-A2JF-06 1 24388577 24388577 C T MYOM3 Missense_Mutation p.D1265N 0.27 deleterious(0.02) benign(0.12) TCGA-D3-A2JF-06 1 247588557 247588557 C T NLRP3 Silent p.I604I 0.36 TCGA-D3-A2JF-06 1 247835861 247835861 C T OR13G1 Missense_Mutation p.M161I 0.15 tolerated(0.11) benign(0.009) TCGA-D3-A2JF-06 1 247876010 247876010 G A OR6F1 Silent p.G16G 0.21 TCGA-D3-A2JF-06 1 248004380 248004380 G A OR11L1 Silent p.I273I 0.24 TCGA-D3-A2JF-06 1 248263421 248263421 C T OR2L13 Silent p.I248I 0.43 TCGA-D3-A2JF-06 1 248343754 248343754 G A OR2M2 Missense_Mutation p.G156E 0.24 deleterious(0) probably_damaging(0.981) TCGA-D3-A2JF-06 1 248366438 248366438 C T OR2M3 Silent p.T23T 0.40 TCGA-D3-A2JF-06 1 248366836 248366836 G A OR2M3 Missense_Mutation p.G156E 0.39 deleterious(0) possibly_damaging(0.888) TCGA-D3-A2JF-06 1 248366917 248366917 C T OR2M3 Missense_Mutation p.S183F 0.39 deleterious(0.02) benign(0.013) TCGA-D3-A2JF-06 1 248570385 248570385 G A OR2T1 Missense_Mutation p.V364M 0.20 tolerated_low_confidence(0.06) benign(0.046) TCGA-D3-A2JF-06 1 248737906 248737906 G A OR2T34 Silent p.I51I 0.18 TCGA-D3-A2JF-06 1 248789580 248789580 G A OR2T11 Missense_Mutation p.P284S 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 1 248814048 248814048 G A OR2T27 Silent p.I46I 0.11 TCGA-D3-A2JF-06 1 26230203 26230203 G A STMN1 Missense_Mutation p.P39S 0.20 tolerated(0.48) benign(0.011) TCGA-D3-A2JF-06 1 27277921 27277921 C T C1orf172 Silent p.E317E 0.45 TCGA-D3-A2JF-06 1 27434297 27434297 G A SLC9A1 Missense_Mutation p.S375F 0.31 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JF-06 1 29040750 29040750 C T GMEB1 Missense_Mutation p.P396L 0.45 tolerated(0.52) benign(0.17) TCGA-D3-A2JF-06 1 32101003 32101003 G A PEF1 Missense_Mutation p.P49S 0.27 tolerated(0.17) unknown(0) TCGA-D3-A2JF-06 1 3328855 3328855 C T PRDM16 Silent p.S698S 0.39 TCGA-D3-A2JF-06 1 34190205 34190205 G A CSMD2 Silent p.S892S 0.17 TCGA-D3-A2JF-06 1 34204872 34204872 C T CSMD2 Missense_Mutation p.S706N 0.47 tolerated(0.54) benign(0.029) TCGA-D3-A2JF-06 1 34208985 34208985 C T CSMD2 Missense_Mutation p.G650E 0.18 deleterious(0) probably_damaging(0.978) TCGA-D3-A2JF-06 1 34238193 34238193 G A CSMD2 Missense_Mutation p.S568L 0.19 deleterious(0) possibly_damaging(0.624) TCGA-D3-A2JF-06 1 34276407 34276407 G A CSMD2 Silent p.F421F 0.22 TCGA-D3-A2JF-06 1 35452993 35452993 G A ZMYM6 Silent p.F1230F 0.21 TCGA-D3-A2JF-06 1 37315973 37315973 C T GRIK3 Missense_Mutation p.G422D 0.24 tolerated(0.69) benign(0.001) TCGA-D3-A2JF-06 1 38181711 38181711 G A EPHA10 3'UTR 0.57 TCGA-D3-A2JF-06 1 38227004 38227004 C T EPHA10 Intron 0.45 TCGA-D3-A2JF-06 1 38227189 38227189 C T EPHA10 Silent p.G246G 0.22 TCGA-D3-A2JF-06 1 39934317 39934317 C T MACF1 Missense_Mutation p.R5203C 0.21 probably_damaging(0.91) TCGA-D3-A2JF-06 1 40704299 40704299 C T RLF Missense_Mutation p.P1309S 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 1 42048413 42048413 C T HIVEP3 Missense_Mutation p.E686K 0.17 benign(0.005) TCGA-D3-A2JF-06 1 43317281 43317281 C T ZNF691 Missense_Mutation p.H249Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 43748622 43748622 C T C1orf210 Missense_Mutation p.R59Q 0.17 tolerated(0.19) benign(0.003) TCGA-D3-A2JF-06 1 43805789 43805789 G A MPL Missense_Mutation p.G282E 0.48 tolerated(0.2) benign(0.021) TCGA-D3-A2JF-06 1 43880750 43880750 T C SZT2 Intron 0.27 TCGA-D3-A2JF-06 1 44071198 44071198 A T PTPRF Splice_Site p.X1130_splice 0.23 TCGA-D3-A2JF-06 1 44437122 44437122 C T DPH2 Missense_Mutation p.P183L 0.41 tolerated(0.14) possibly_damaging(0.474) TCGA-D3-A2JF-06 1 45294229 45294229 G A PTCH2 Silent p.F513F 0.26 TCGA-D3-A2JF-06 1 47395846 47395846 C T CYP4A11 Missense_Mutation p.G501R 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 47515874 47515874 T C CYP4X1 3'UTR 0.36 TCGA-D3-A2JF-06 1 47550608 47550608 C T CYP4Z1 Nonsense_Mutation p.Q244* 0.27 TCGA-D3-A2JF-06 1 4772263 4772263 C T AJAP1 Silent p.L111L 0.50 TCGA-D3-A2JF-06 1 48694631 48694631 G A SLC5A9 Intron 0.20 TCGA-D3-A2JF-06 1 50661416 50661416 G A ELAVL4 Missense_Mutation p.R248Q 0.48 tolerated(0.08) benign(0.076) TCGA-D3-A2JF-06 1 52705095 52705095 C T ZFYVE9 Missense_Mutation p.P669L 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 53237048 53237048 T A ZYG11B Missense_Mutation p.L185M 0.24 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 1 53370377 53370377 C T ECHDC2 Missense_Mutation p.E215K 0.23 tolerated(0.29) benign(0.052) TCGA-D3-A2JF-06 1 54269674 54269674 G A NDC1 Silent p.A331A 0.39 TCGA-D3-A2JF-06 1 54344369 54344369 G A YIPF1 Silent p.S74S 0.22 TCGA-D3-A2JF-06 1 55070051 55070051 G A ACOT11 Silent p.L395L 0.16 TCGA-D3-A2JF-06 1 55096543 55096543 T C ACOT11 Missense_Mutation p.L589P 0.55 unknown(0) TCGA-D3-A2JF-06 1 55118812 55118812 G A MROH7 Silent p.E71E 0.36 TCGA-D3-A2JF-06 1 56962279 56962279 C T PPAP2B Missense_Mutation p.E294K 0.20 tolerated(0.07) benign(0.075) TCGA-D3-A2JF-06 1 5924434 5924434 G A NPHP4 Silent p.L1320L 0.15 TCGA-D3-A2JF-06 1 62739291 62739291 G A KANK4 Silent p.L495L 0.50 TCGA-D3-A2JF-06 1 62740506 62740506 G A KANK4 Silent p.N90N 0.51 TCGA-D3-A2JF-06 1 62740738 62740738 C T KANK4 Missense_Mutation p.G13E 0.23 tolerated(0.29) benign(0.065) TCGA-D3-A2JF-06 1 65099753 65099753 C G CACHD1 Silent p.T221T 0.11 TCGA-D3-A2JF-06 1 66081851 66081851 C T LEPR Missense_Mutation p.S719L 0.15 deleterious(0) probably_damaging(0.925) TCGA-D3-A2JF-06 1 67194967 67194967 G A SGIP1 Missense_Mutation p.G588E 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 1 70541808 70541808 C T LRRC7 Missense_Mutation p.R1389C 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2JF-06 1 74905193 74905195 CTG TT TNNI3K Frame_Shift_Del p.P734Lfs*66 0.35 TCGA-D3-A2JF-06 1 75037857 75037857 C T C1orf173 Silent p.G1179G 0.42 TCGA-D3-A2JF-06 1 75614339 75614339 G A LHX8 Missense_Mutation p.R261K 0.29 tolerated(0.74) benign(0.056) TCGA-D3-A2JF-06 1 75622642 75622642 C T LHX8 Missense_Mutation p.T292I 0.25 tolerated(0.2) benign(0.036) TCGA-D3-A2JF-06 1 82408935 82408935 G A LPHN2 Missense_Mutation p.R227K 0.19 deleterious(0.01) possibly_damaging(0.607) TCGA-D3-A2JF-06 1 87031693 87031693 G A CLCA4 Missense_Mutation p.G315E 0.23 tolerated(0.06) benign(0.434) TCGA-D3-A2JF-06 1 89889905 89889905 G A GBP1P1 RNA 0.17 TCGA-D3-A2JF-06 1 9117564 9117564 G A SLC2A5 Missense_Mutation p.P79L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 1 91967238 91967238 C T CDC7 5'UTR 0.46 TCGA-D3-A2JF-06 1 91967239 91967239 C T CDC7 5'UTR 0.45 TCGA-D3-A2JF-06 1 92177817 92177817 G A TGFBR3 Missense_Mutation p.P717S 0.67 tolerated(0.86) benign(0.006) TCGA-D3-A2JF-06 1 92441921 92441921 C T BRDT Missense_Mutation p.P182S 0.27 tolerated(0.08) benign(0.002) TCGA-D3-A2JF-06 1 94502706 94502706 C T ABCA4 Missense_Mutation p.E1270K 0.41 deleterious(0) probably_damaging(0.972) TCGA-D3-A2JF-06 1 97658765 97658765 C T DPYD Missense_Mutation p.E828K 0.47 tolerated(0.17) benign(0.011) TCGA-D3-A2JF-06 1 983033 983033 C T AGRN Silent p.S1199S 0.59 TCGA-D3-A2JF-06 20 10025099 10025099 C T ANKEF1 Nonsense_Mutation p.R202* 0.39 TCGA-D3-A2JF-06 20 10621503 10621503 C T JAG1 Missense_Mutation p.D1043N 0.39 tolerated(0.57) benign(0) TCGA-D3-A2JF-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.35 tolerated(0.25) probably_damaging(0.996) TCGA-D3-A2JF-06 20 13604142 13604142 G A TASP1 Missense_Mutation p.A78V 0.32 tolerated(0.28) benign(0.009) TCGA-D3-A2JF-06 20 1517811 1517811 C T SIRPD Silent p.L189L 0.31 TCGA-D3-A2JF-06 20 17475618 17475618 G A BFSP1 Missense_Mutation p.P367S 0.33 tolerated(0.07) probably_damaging(0.965) TCGA-D3-A2JF-06 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.36 deleterious(0.03) benign(0.256) TCGA-D3-A2JF-06 20 2297713 2297713 G A TGM3 Splice_Site p.X224_splice 0.40 TCGA-D3-A2JF-06 20 2298097 2298097 G A TGM3 Missense_Mutation p.G317R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 20 25056932 25056932 C T VSX1 Missense_Mutation p.E355K 0.45 tolerated(0.08) benign(0.003) TCGA-D3-A2JF-06 20 2635510 2635510 C T NOP56 Silent p.N162N 0.38 TCGA-D3-A2JF-06 20 2688609 2688609 G A EBF4 Missense_Mutation p.G140E 0.45 deleterious(0) probably_damaging(0.973) TCGA-D3-A2JF-06 20 29992700 29992700 G A DEFB121 3'UTR 0.19 TCGA-D3-A2JF-06 20 3016261 3016261 G A PTPRA Missense_Mutation p.G651R 0.47 tolerated(0.62) probably_damaging(0.914) TCGA-D3-A2JF-06 20 31291165 31291165 G A COMMD7 3'UTR 0.32 TCGA-D3-A2JF-06 20 31651470 31651470 G A BPIFB3 Missense_Mutation p.G214E 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A2JF-06 20 3355764 3355764 C T C20orf194 Missense_Mutation p.E140K 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JF-06 20 35064522 35064522 G A DLGAP4 Missense_Mutation p.G337D 0.38 tolerated(0.9) benign(0.055) TCGA-D3-A2JF-06 20 35748950 35748950 C T MROH8 Missense_Mutation p.G756E 0.33 tolerated(0.06) probably_damaging(1) TCGA-D3-A2JF-06 20 37186985 37186985 C T RALGAPB Silent p.S1140S 0.27 TCGA-D3-A2JF-06 20 39832651 39832651 G A ZHX3 Silent p.P302P 0.36 TCGA-D3-A2JF-06 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 20 41400092 41400092 C T PTPRT Missense_Mutation p.D223N 0.33 tolerated(0.43) probably_damaging(0.976) TCGA-D3-A2JF-06 20 41419868 41419868 G A PTPRT Silent p.L151L 0.41 TCGA-D3-A2JF-06 20 43881663 43881663 G A SLPI Missense_Mutation p.S125F 0.41 tolerated(0.12) benign(0.008) TCGA-D3-A2JF-06 20 43944827 43944827 G A RBPJL Missense_Mutation p.A341T 0.18 deleterious(0) possibly_damaging(0.888) TCGA-D3-A2JF-06 20 44168016 44168016 C T WFDC6 Missense_Mutation p.V11I 0.38 tolerated(0.06) possibly_damaging(0.866) TCGA-D3-A2JF-06 20 44664487 44664487 C T SLC12A5 Silent p.F140F 0.40 TCGA-D3-A2JF-06 20 45130203 45130203 C T ZNF334 Missense_Mutation p.R592Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 20 45131165 45131165 C T ZNF334 Silent p.R271R 0.31 TCGA-D3-A2JF-06 20 45133364 45133364 G A ZNF334 Nonsense_Mutation p.Q13* 0.33 TCGA-D3-A2JF-06 20 45717915 45717915 G A EYA2 Silent p.A233A 0.29 TCGA-D3-A2JF-06 20 45811939 45811939 G A EYA2 Missense_Mutation p.G479E 0.36 deleterious(0) probably_damaging(0.925) TCGA-D3-A2JF-06 20 46277839 46277839 C T NCOA3 Nonsense_Mutation p.Q1213* 0.26 TCGA-D3-A2JF-06 20 50221382 50221382 G A ATP9A Missense_Mutation p.S994F 0.20 deleterious(0) possibly_damaging(0.894) TCGA-D3-A2JF-06 20 50406783 50406783 C T SALL4 Missense_Mutation p.G747S 0.47 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 20 50408881 50408881 C T SALL4 Silent p.V47V 0.31 TCGA-D3-A2JF-06 20 51870346 51870346 G A TSHZ2 Missense_Mutation p.E117K 0.41 tolerated(0.43) possibly_damaging(0.475) TCGA-D3-A2JF-06 20 55209215 55209215 G A TFAP2C Silent p.S271S 0.34 TCGA-D3-A2JF-06 20 55910510 55910510 G A SPO11 Silent p.R211R 0.28 TCGA-D3-A2JF-06 20 56090866 56090866 G A CTCFL Nonsense_Mutation p.R362* 0.35 TCGA-D3-A2JF-06 20 56139563 56139563 G A PCK1 Silent p.S404S 0.38 TCGA-D3-A2JF-06 20 5904144 5904144 C T CHGB Nonsense_Mutation p.Q452* 0.28 TCGA-D3-A2JF-06 20 60921782 60921782 G A LAMA5 Silent p.L383L 0.26 TCGA-D3-A2JF-06 20 60921783 60921783 G A LAMA5 Silent p.S382S 0.27 TCGA-D3-A2JF-06 20 60921788 60921788 G A LAMA5 Nonsense_Mutation p.Q381* 0.26 TCGA-D3-A2JF-06 20 62839674 62839674 G A MYT1 Silent p.R375R 0.20 TCGA-D3-A2JF-06 20 8717764 8717764 G A PLCB1 Silent p.K711K 0.47 TCGA-D3-A2JF-06 20 8717784 8717784 C T PLCB1 Missense_Mutation p.S718F 0.28 deleterious(0) possibly_damaging(0.744) TCGA-D3-A2JF-06 20 9546766 9546766 G A PAK7 Missense_Mutation p.S419F 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JF-06 21 10862761 10862761 C T IGHV1OR21-1 Silent p.S19S 0.17 TCGA-D3-A2JF-06 21 10998251 10998251 C T TPTE RNA 0.16 TCGA-D3-A2JF-06 21 11039138 11039138 G A BAGE2 RNA 0.04 TCGA-D3-A2JF-06 21 15013756 15013756 G A POTED Missense_Mutation p.E542K 0.56 tolerated(0.15) benign(0.001) TCGA-D3-A2JF-06 21 19647525 19647525 C T TMPRSS15 Missense_Mutation p.D965N 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 21 19713772 19713772 G A TMPRSS15 Missense_Mutation p.P508S 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A2JF-06 21 19744641 19744641 C T TMPRSS15 Missense_Mutation p.G178E 0.35 tolerated(0.2) benign(0.013) TCGA-D3-A2JF-06 21 28338243 28338243 G A ADAMTS5 Silent p.F156F 0.47 TCGA-D3-A2JF-06 21 31538558 31538558 G A CLDN17 Silent p.F126F 0.30 TCGA-D3-A2JF-06 21 31538881 31538881 C T CLDN17 Missense_Mutation p.V19M 0.19 deleterious(0) possibly_damaging(0.751) TCGA-D3-A2JF-06 21 31812779 31812779 C T KRTAP15-1 Missense_Mutation p.S45F 0.38 deleterious(0) benign(0.146) TCGA-D3-A2JF-06 21 32185207 32185207 A T KRTAP8-1 3'UTR 0.40 TCGA-D3-A2JF-06 21 32185208 32185208 C A KRTAP8-1 3'UTR 0.40 TCGA-D3-A2JF-06 21 34793892 34793892 C T IFNGR2 Silent p.G104G 0.39 TCGA-D3-A2JF-06 21 35237568 35237568 G C ITSN1 Missense_Mutation p.R1335P 0.43 deleterious(0.01) benign(0.277) TCGA-D3-A2JF-06 21 38103401 38103401 C T SIM2 Missense_Mutation p.H267Y 0.30 deleterious(0) possibly_damaging(0.61) TCGA-D3-A2JF-06 21 40250767 40250767 G A AF064858.6 RNA 0.44 TCGA-D3-A2JF-06 21 41452168 41452168 C T DSCAM Missense_Mutation p.G1444E 0.41 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JF-06 21 41465678 41465678 C T DSCAM Missense_Mutation p.E1274K 0.24 tolerated(0.1) benign(0.185) TCGA-D3-A2JF-06 21 43547787 43547787 C T UMODL1 Missense_Mutation p.P1307L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 21 45774555 45774555 C T TRPM2 Missense_Mutation p.P64S 0.30 tolerated(0.27) benign(0.019) TCGA-D3-A2JF-06 21 45795873 45795873 C T TRPM2 Missense_Mutation p.S310L 0.20 deleterious(0.03) benign(0.339) TCGA-D3-A2JF-06 21 45815365 45815365 C T TRPM2 Silent p.P621P 0.30 TCGA-D3-A2JF-06 21 46074388 46074388 G A KRTAP12-4 Silent p.P48P 0.41 TCGA-D3-A2JF-06 21 46197277 46197277 G A UBE2G2 Missense_Mutation p.P61S 0.20 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 21 46935716 46935716 G A SLC19A1 Silent p.S544S 0.35 TCGA-D3-A2JF-06 21 47660768 47660768 A T MCM3AP Missense_Mutation p.C1864S 0.27 tolerated(0.16) benign(0.002) TCGA-D3-A2JF-06 22 16287360 16287360 C T POTEH Missense_Mutation p.D176N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 22 18300279 18300279 G A MICAL3 Silent p.G1716G 0.73 TCGA-D3-A2JF-06 22 20130526 20130526 C T ZDHHC8 Missense_Mutation p.P458L 0.54 deleterious(0.04) benign(0.007) TCGA-D3-A2JF-06 22 20977010 20977010 G A SMPD4P1 RNA 0.40 TCGA-D3-A2JF-06 22 21159334 21159334 G A PI4KA Missense_Mutation p.P430S 0.58 tolerated(0.34) benign(0.005) TCGA-D3-A2JF-06 22 21159335 21159335 G A PI4KA Silent p.S429S 0.59 TCGA-D3-A2JF-06 22 23235932 23235932 G A IGLL5 Missense_Mutation p.G87R 0.68 tolerated_low_confidence(0.11) benign(0.019) TCGA-D3-A2JF-06 22 25294019 25294019 G A SGSM1 Silent p.G756G 0.35 TCGA-D3-A2JF-06 22 25294445 25294445 C T SGSM1 Silent p.L898L 0.45 TCGA-D3-A2JF-06 22 25620957 25620957 G A CRYBB2 Missense_Mutation p.E43K 0.64 deleterious(0) possibly_damaging(0.503) TCGA-D3-A2JF-06 22 26688979 26688979 G A SEZ6L Silent p.Q234Q 0.36 TCGA-D3-A2JF-06 22 26688980 26688980 G A SEZ6L Missense_Mutation p.E235K 0.36 tolerated(0.15) benign(0.15) TCGA-D3-A2JF-06 22 29446318 29446318 C T ZNRF3 Nonsense_Mutation p.Q717* 0.44 TCGA-D3-A2JF-06 22 30374518 30374518 C T MTMR3 Nonsense_Mutation p.Q31* 0.58 TCGA-D3-A2JF-06 22 30887692 30887692 C T SEC14L4 Missense_Mutation p.G317R 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 22 31534368 31534368 C T PLA2G3 Missense_Mutation p.D226N 0.53 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 22 37420676 37420676 C T MPST Silent p.L160L 0.86 TCGA-D3-A2JF-06 22 37462108 37462108 G A TMPRSS6 3'UTR 0.68 TCGA-D3-A2JF-06 22 37524184 37524184 G A IL2RB Silent p.Y536Y 0.63 TCGA-D3-A2JF-06 22 37891816 37891816 G A CARD10 Missense_Mutation p.P752S 0.36 deleterious(0.01) possibly_damaging(0.543) TCGA-D3-A2JF-06 22 38565283 38565283 G A PLA2G6 Missense_Mutation p.P51S 0.50 tolerated(1) benign(0) TCGA-D3-A2JF-06 22 39222572 39222572 C T NPTXR Missense_Mutation p.G344E 0.50 deleterious(0.03) benign(0.067) TCGA-D3-A2JF-06 22 40662665 40662665 C T TNRC6B Nonsense_Mutation p.R811* 0.54 TCGA-D3-A2JF-06 22 41572350 41572350 C T EP300 Missense_Mutation p.R1627W 0.56 probably_damaging(0.999) TCGA-D3-A2JF-06 22 43950960 43950960 G A EFCAB6 Missense_Mutation p.A1146V 0.55 tolerated(0.08) benign(0.268) TCGA-D3-A2JF-06 22 50728360 50728360 G A PLXNB2 Silent p.F218F 0.47 TCGA-D3-A2JF-06 2 101095818 101095818 C T NMS Missense_Mutation p.P89S 0.48 tolerated(0.45) benign(0.012) TCGA-D3-A2JF-06 2 101097621 101097621 C T NMS Missense_Mutation p.L136F 0.18 tolerated(0.09) benign(0.067) TCGA-D3-A2JF-06 2 101670715 101670715 G A TBC1D8 Silent p.F147F 0.40 TCGA-D3-A2JF-06 2 10192542 10192542 C T KLF11 Missense_Mutation p.P483S 0.21 tolerated(0.07) possibly_damaging(0.874) TCGA-D3-A2JF-06 2 102805667 102805667 C T IL1RL2 Missense_Mutation p.P64S 0.27 deleterious(0.04) benign(0.134) TCGA-D3-A2JF-06 2 102964478 102964478 C T IL1RL1 Silent p.I348I 0.18 TCGA-D3-A2JF-06 2 103063665 103063665 G A IL18RAP Missense_Mutation p.G403E 0.45 tolerated(0.11) benign(0.391) TCGA-D3-A2JF-06 2 103120016 103120016 G A SLC9A4 Missense_Mutation p.G277E 0.19 deleterious(0.03) probably_damaging(1) TCGA-D3-A2JF-06 2 107460085 107460085 C T ST6GAL2 Missense_Mutation p.G117R 0.20 benign(0.011) TCGA-D3-A2JF-06 2 108872049 108872049 C T SULT1C3 Missense_Mutation p.P141S 0.19 deleterious(0.01) benign(0.083) TCGA-D3-A2JF-06 2 111556630 111556630 G A ACOXL Missense_Mutation p.G167E 0.34 deleterious(0.04) benign(0.263) TCGA-D3-A2JF-06 2 11367399 11367399 G A ROCK2 Silent p.F283F 0.21 TCGA-D3-A2JF-06 2 113832950 113832950 G A IL1F10 3'UTR 0.23 TCGA-D3-A2JF-06 2 113875605 113875605 G A IL1RN Missense_Mutation p.A4T 0.41 unknown(0) TCGA-D3-A2JF-06 2 119739047 119739047 G A MARCO Missense_Mutation p.G277R 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 2 120857838 120857838 G A EPB41L5 Silent p.S399S 0.41 TCGA-D3-A2JF-06 2 125671908 125671908 T A CNTNAP5 3'UTR 0.44 TCGA-D3-A2JF-06 2 127828159 127828159 G A BIN1 Silent p.P95P 0.22 TCGA-D3-A2JF-06 2 128047036 128047036 G A ERCC3 Silent p.S233S 0.37 TCGA-D3-A2JF-06 2 130785953 130785953 C T FAR2P1 RNA 0.38 TCGA-D3-A2JF-06 2 131976359 131976359 C T POTEE Silent p.F128F 0.13 TCGA-D3-A2JF-06 2 133541955 133541955 G A NCKAP5 Missense_Mutation p.S810L 0.20 tolerated(0.09) probably_damaging(0.941) TCGA-D3-A2JF-06 2 133751795 133751795 C T NCKAP5 Missense_Mutation p.R120Q 0.46 deleterious(0) possibly_damaging(0.876) TCGA-D3-A2JF-06 2 135744773 135744773 C T MAP3K19 Missense_Mutation p.E557K 0.27 tolerated(0.08) possibly_damaging(0.521) TCGA-D3-A2JF-06 2 135745484 135745484 C T MAP3K19 Missense_Mutation p.E320K 0.13 tolerated(0.11) benign(0.037) TCGA-D3-A2JF-06 2 135887606 135887606 G A RAB3GAP1 Missense_Mutation p.E339K 0.09 tolerated(0.07) probably_damaging(0.987) TCGA-D3-A2JF-06 2 136575403 136575403 C T LCT Silent p.G405G 0.30 TCGA-D3-A2JF-06 2 137852630 137852630 C T THSD7B Missense_Mutation p.P380S 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JF-06 2 137928434 137928434 G A THSD7B Missense_Mutation p.G550E 0.41 tolerated(0.4) probably_damaging(0.969) TCGA-D3-A2JF-06 2 137990568 137990568 C T THSD7B Missense_Mutation p.P672L 0.38 tolerated(0.17) possibly_damaging(0.607) TCGA-D3-A2JF-06 2 138373880 138373880 C T THSD7B Silent p.L1190L 0.20 TCGA-D3-A2JF-06 2 141122349 141122349 C T LRP1B Missense_Mutation p.G3671E 0.45 probably_damaging(0.931) TCGA-D3-A2JF-06 2 141208161 141208161 C T LRP1B Missense_Mutation p.G3345R 0.43 probably_damaging(0.988) TCGA-D3-A2JF-06 2 1481021 1481021 C T TPO Missense_Mutation p.T328I 0.62 deleterious(0.01) possibly_damaging(0.864) TCGA-D3-A2JF-06 2 152496921 152496921 G A NEB Missense_Mutation p.P2878L 0.42 probably_damaging(1) TCGA-D3-A2JF-06 2 152739782 152739782 G A CACNB4 Nonsense_Mutation p.Q84* 0.42 TCGA-D3-A2JF-06 2 160824138 160824138 C T PLA2R1 Missense_Mutation p.R939Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 2 162280633 162280633 C T TBR1 Silent p.S648S 0.44 TCGA-D3-A2JF-06 2 163059452 163059452 C T FAP Missense_Mutation p.E385K 0.34 tolerated(0.47) possibly_damaging(0.472) TCGA-D3-A2JF-06 2 163253327 163253327 C T KCNH7 Missense_Mutation p.D846N 0.32 deleterious(0) probably_damaging(0.959) TCGA-D3-A2JF-06 2 163302779 163302779 C T KCNH7 Missense_Mutation p.D435N 0.17 tolerated(0.09) benign(0.091) TCGA-D3-A2JF-06 2 165948835 165948835 G A SCN3A Missense_Mutation p.S1579F 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 2 166032948 166032948 G A SCN3A 5'UTR 0.20 TCGA-D3-A2JF-06 2 166167016 166167016 C T SCN2A Missense_Mutation p.S294F 0.50 tolerated(0.16) benign(0.336) TCGA-D3-A2JF-06 2 166245943 166245943 G A SCN2A Missense_Mutation p.R1876Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 2 167284379 167284379 C T SCN7A Silent p.R924R 0.34 TCGA-D3-A2JF-06 2 170033035 170033035 C T LRP2 Missense_Mutation p.G3486E 0.24 probably_damaging(0.997) TCGA-D3-A2JF-06 2 170070203 170070203 G A LRP2 Missense_Mutation p.P2002S 0.21 benign(0.013) TCGA-D3-A2JF-06 2 171240224 171240224 C T MYO3B Missense_Mutation p.S397F 0.07 deleterious(0) probably_damaging(0.969) TCGA-D3-A2JF-06 2 175622398 175622398 C T CHRNA1 Nonsense_Mutation p.W105* 0.27 TCGA-D3-A2JF-06 2 176794787 176794787 C T KIAA1715 Missense_Mutation p.E399K 0.35 tolerated(0.23) benign(0.242) TCGA-D3-A2JF-06 2 179326054 179326054 C T DFNB59 3'UTR 0.47 TCGA-D3-A2JF-06 2 179444336 179444336 C T TTN Missense_Mutation p.G22530R 0.32 TCGA-D3-A2JF-06 2 179473425 179473425 C T TTN Missense_Mutation p.G17438E 0.27 TCGA-D3-A2JF-06 2 179528789 179528789 T A TTN Missense_Mutation p.K12106I 0.31 TCGA-D3-A2JF-06 2 179542534 179542534 C T TTN Missense_Mutation p.E11369K 0.43 TCGA-D3-A2JF-06 2 179567353 179567353 G A TTN Silent p.I10087I 0.50 TCGA-D3-A2JF-06 2 179599493 179599493 G A TTN Missense_Mutation p.S5053L 0.45 TCGA-D3-A2JF-06 2 179599565 179599565 C T TTN Missense_Mutation p.R5029Q 0.20 TCGA-D3-A2JF-06 2 179600488 179600488 C T TTN Silent p.E4895E 0.52 TCGA-D3-A2JF-06 2 179612218 179612218 G A TTN Intron 0.23 TCGA-D3-A2JF-06 2 179615810 179615810 G A TTN Intron 0.20 TCGA-D3-A2JF-06 2 179616249 179616249 C T TTN Intron 0.36 TCGA-D3-A2JF-06 2 179633551 179633551 A C TTN Missense_Mutation p.N3004K 0.51 TCGA-D3-A2JF-06 2 179641392 179641392 C T TTN Silent p.T1733T 0.55 TCGA-D3-A2JF-06 2 179720250 179720250 C T CCDC141 Missense_Mutation p.E962K 0.17 tolerated(0.11) possibly_damaging(0.678) TCGA-D3-A2JF-06 2 179733993 179733993 C T CCDC141 Missense_Mutation p.E749K 0.34 deleterious(0.01) probably_damaging(0.953) TCGA-D3-A2JF-06 2 182360118 182360118 C T ITGA4 Missense_Mutation p.R454W 0.13 deleterious(0.02) benign(0.004) TCGA-D3-A2JF-06 2 183070693 183070693 C T PDE1A Silent p.L308L 0.20 TCGA-D3-A2JF-06 2 183104880 183104880 G A PDE1A Missense_Mutation p.R119W 0.23 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 2 185798353 185798353 G A ZNF804A Silent p.R93R 0.53 TCGA-D3-A2JF-06 2 185800741 185800741 G A ZNF804A Silent p.G206G 0.37 TCGA-D3-A2JF-06 2 186678721 186678721 G A FSIP2 Silent p.T6848T 0.19 TCGA-D3-A2JF-06 2 189916072 189916072 C T COL5A2 Missense_Mutation p.G969R 0.46 unknown(0) TCGA-D3-A2JF-06 2 189923601 189923601 C T COL5A2 Missense_Mutation p.G702R 0.42 unknown(0) TCGA-D3-A2JF-06 2 192011404 192011404 G A STAT4 Missense_Mutation p.R70C 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 2 196602679 196602679 C T DNAH7 Missense_Mutation p.R4014Q 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 2 196729028 196729028 C T DNAH7 Missense_Mutation p.D2451N 0.42 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 2 196801411 196801411 C T DNAH7 Missense_Mutation p.E1062K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2JF-06 2 197183397 197183397 C T HECW2 Silent p.R739R 0.25 TCGA-D3-A2JF-06 2 197194326 197194326 G A HECW2 Nonsense_Mutation p.R182* 0.50 TCGA-D3-A2JF-06 2 197664364 197664364 G A GTF3C3 5'UTR 0.26 TCGA-D3-A2JF-06 2 200213697 200213697 G A SATB2 Silent p.P300P 0.31 TCGA-D3-A2JF-06 2 20166532 20166532 C T WDR35 Missense_Mutation p.G383R 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 2 202687588 202687588 C T CDK15 Missense_Mutation p.H169Y 0.17 deleterious(0.02) benign(0.206) TCGA-D3-A2JF-06 2 207172439 207172439 G A ZDBF2 Missense_Mutation p.E1063K 0.48 tolerated(0.16) possibly_damaging(0.678) TCGA-D3-A2JF-06 2 211179661 211179661 C T MYL1 Missense_Mutation p.E36K 0.44 tolerated(0.26) benign(0.037) TCGA-D3-A2JF-06 2 21229058 21229058 G A APOB Missense_Mutation p.S3561F 0.21 benign(0.162) TCGA-D3-A2JF-06 2 21230001 21230001 G A APOB Nonsense_Mutation p.Q3247* 0.45 TCGA-D3-A2JF-06 2 21230343 21230343 G A APOB Missense_Mutation p.P3133S 0.19 probably_damaging(0.999) TCGA-D3-A2JF-06 2 21234515 21234515 A G APOB Missense_Mutation p.M1742T 0.24 benign(0.049) TCGA-D3-A2JF-06 2 212537890 212537890 G A ERBB4 Missense_Mutation p.P572L 0.43 deleterious(0.04) possibly_damaging(0.546) TCGA-D3-A2JF-06 2 213290992 213290992 A C ERBB4 Intron 0.28 TCGA-D3-A2JF-06 2 216279657 216279657 A G FN1 Missense_Mutation p.F615S 0.61 tolerated(0.08) benign(0.014) TCGA-D3-A2JF-06 2 218925481 218925481 G A CXCR2P1 RNA 0.50 TCGA-D3-A2JF-06 2 219353064 219353064 G A USP37 Missense_Mutation p.P518L 0.48 tolerated(1) benign(0.004) TCGA-D3-A2JF-06 2 219688974 219688974 C T PRKAG3 Missense_Mutation p.E442K 0.33 tolerated(0.29) possibly_damaging(0.497) TCGA-D3-A2JF-06 2 220336616 220336616 C T SPEG Missense_Mutation p.P1248S 0.23 probably_damaging(0.936) TCGA-D3-A2JF-06 2 220355655 220355655 G A SPEG Missense_Mutation p.R3121H 0.21 possibly_damaging(0.888) TCGA-D3-A2JF-06 2 223554030 223554030 G A MOGAT1 Missense_Mutation p.G107E 0.62 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 2 226447420 226447420 C T NYAP2 Silent p.Y429Y 0.25 TCGA-D3-A2JF-06 2 227896978 227896978 C T COL4A4 Missense_Mutation p.G1198R 0.49 unknown(0) TCGA-D3-A2JF-06 2 227896979 227896979 C T COL4A4 Silent p.V1197V 0.49 TCGA-D3-A2JF-06 2 228882152 228882152 C T SPHKAP Missense_Mutation p.E1140K 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 2 228884716 228884716 C T SPHKAP Missense_Mutation p.R285Q 0.20 tolerated(0.48) benign(0.004) TCGA-D3-A2JF-06 2 230923964 230923964 C T SLC16A14 Missense_Mutation p.M35I 0.17 tolerated(0.08) benign(0.062) TCGA-D3-A2JF-06 2 231253291 231253291 C T SP140L Missense_Mutation p.P268S 0.40 tolerated(0.37) benign(0.09) TCGA-D3-A2JF-06 2 231256845 231256845 C T SP140L Silent p.F336F 0.41 TCGA-D3-A2JF-06 2 232458731 232458731 A C C2orf57 Missense_Mutation p.I357L 0.29 tolerated(0.09) benign(0) TCGA-D3-A2JF-06 2 233243914 233243914 G A ALPP Missense_Mutation p.M66I 0.44 deleterious(0) probably_damaging(0.925) TCGA-D3-A2JF-06 2 233839619 233839619 T A NGEF 5'UTR 0.41 TCGA-D3-A2JF-06 2 233986883 233986883 G A INPP5D Missense_Mutation p.E89K 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JF-06 2 234077950 234077950 G A INPP5D Splice_Site p.X507_splice 0.33 TCGA-D3-A2JF-06 2 234112876 234112876 C T INPP5D Missense_Mutation p.S1015F 0.23 deleterious(0) possibly_damaging(0.622) TCGA-D3-A2JF-06 2 234113017 234113017 C T INPP5D Missense_Mutation p.P1062L 0.19 deleterious_low_confidence(0.01) benign(0.059) TCGA-D3-A2JF-06 2 234113018 234113018 C T INPP5D Silent p.P1062P 0.22 TCGA-D3-A2JF-06 2 234184556 234184556 G T ATG16L1 Intron 0.32 TCGA-D3-A2JF-06 2 234526798 234526798 C T UGT1A8 Missense_Mutation p.P149S 0.19 deleterious(0.02) probably_damaging(0.971) TCGA-D3-A2JF-06 2 234526965 234526965 G A UGT1A8 Silent p.K204K 0.42 TCGA-D3-A2JF-06 2 234676946 234676946 G A UGT1A10 Missense_Mutation p.V386M 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 2 238290072 238290072 G A COL6A3 Silent p.F461F 0.38 TCGA-D3-A2JF-06 2 240985047 240985047 G A OR6B3 Missense_Mutation p.S148F 0.45 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 2 240985397 240985397 G A OR6B3 Silent p.F31F 0.50 TCGA-D3-A2JF-06 2 241686696 241686696 G A KIF1A Missense_Mutation p.S1007L 0.33 deleterious(0) benign(0.01) TCGA-D3-A2JF-06 2 26702507 26702507 C T OTOF Missense_Mutation p.E643K 0.47 tolerated(0.84) benign(0.001) TCGA-D3-A2JF-06 2 27672935 27672935 G A IFT172 Missense_Mutation p.P1327L 0.19 tolerated(0.25) benign(0.06) TCGA-D3-A2JF-06 2 27746371 27746371 G A GCKR 3'UTR 0.25 TCGA-D3-A2JF-06 2 28865907 28865907 C T PLB1 Silent p.L1453L 0.20 TCGA-D3-A2JF-06 2 29006829 29006829 G T PPP1CB Missense_Mutation p.D193Y 0.09 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-D3-A2JF-06 2 29354162 29354162 G A CLIP4 Missense_Mutation p.E58K 0.27 deleterious(0.01) possibly_damaging(0.735) TCGA-D3-A2JF-06 2 29386729 29386729 C T CLIP4 Missense_Mutation p.H523Y 0.47 tolerated(0.39) benign(0.033) TCGA-D3-A2JF-06 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-D3-A2JF-06 2 31165076 31165076 C T GALNT14 Missense_Mutation p.E313K 0.29 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 2 31754406 31754406 G A AL133247.2 Intron 0.19 TCGA-D3-A2JF-06 2 33412096 33412096 C T LTBP1 Missense_Mutation p.H459Y 0.17 deleterious(0) possibly_damaging(0.864) TCGA-D3-A2JF-06 2 39406415 39406415 G A CDKL4 Silent p.L280L 0.13 TCGA-D3-A2JF-06 2 40397451 40397451 G A SLC8A1 Missense_Mutation p.P670S 0.29 tolerated(0.23) benign(0.002) TCGA-D3-A2JF-06 2 40405618 40405618 G A SLC8A1 Silent p.V608V 0.43 TCGA-D3-A2JF-06 2 42284745 42284745 C T PKDCC Missense_Mutation p.R467W 0.23 deleterious(0) possibly_damaging(0.852) TCGA-D3-A2JF-06 2 44079992 44079992 C T ABCG8 Missense_Mutation p.P317S 0.23 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 2 48718290 48718290 A T PPP1R21 Missense_Mutation p.Y527F 0.48 tolerated(0.12) benign(0.12) TCGA-D3-A2JF-06 2 51254766 51254766 G A NRXN1 Missense_Mutation p.P216S 0.27 tolerated(0.23) benign(0.001) TCGA-D3-A2JF-06 2 54852043 54852043 C T SPTBN1 Missense_Mutation p.R429C 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 2 66667037 66667037 C T MEIS1 Missense_Mutation p.P101L 0.35 deleterious(0) probably_damaging(0.918) TCGA-D3-A2JF-06 2 68592376 68592376 G A PLEK 5'UTR 0.57 TCGA-D3-A2JF-06 2 69708038 69708038 G A AAK1 Silent p.P841P 0.16 TCGA-D3-A2JF-06 2 69708039 69708039 G A AAK1 Missense_Mutation p.P841L 0.15 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-D3-A2JF-06 2 70188629 70188629 C T ASPRV1 Silent p.L64L 0.29 TCGA-D3-A2JF-06 2 70919565 70919565 G A ADD2 Silent p.I225I 0.43 TCGA-D3-A2JF-06 2 71043462 71043462 G A CLEC4F Missense_Mutation p.R351C 0.33 tolerated(0.2) benign(0.004) TCGA-D3-A2JF-06 2 71060973 71060973 G A CD207 Silent p.F123F 0.25 TCGA-D3-A2JF-06 2 71159921 71159921 C G VAX2 Missense_Mutation p.R154G 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 2 71160139 71160139 C T VAX2 Silent p.S226S 0.43 TCGA-D3-A2JF-06 2 71653716 71653716 C T ZNF638 Missense_Mutation p.P1573S 0.37 tolerated(0.37) probably_damaging(0.999) TCGA-D3-A2JF-06 2 71871135 71871135 C T DYSF Missense_Mutation p.S1523F 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 2 73441363 73441363 G A SMYD5 5'UTR 0.32 TCGA-D3-A2JF-06 2 74307655 74307655 C T TET3 Silent p.I737I 0.32 TCGA-D3-A2JF-06 2 75094879 75094879 C T HK2 Missense_Mutation p.P115S 0.32 deleterious(0.03) benign(0.044) TCGA-D3-A2JF-06 2 77745548 77745548 C T LRRTM4 Missense_Mutation p.E483K 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2JF-06 2 86257385 86257385 C T POLR1A Silent p.K1571K 0.37 TCGA-D3-A2JF-06 2 89266240 89266240 G A IGKV1-6 Silent p.P6P 0.35 TCGA-D3-A2JF-06 2 89416874 89416874 C T IGKV1-17 Missense_Mutation p.D104N 0.31 deleterious(0) probably_damaging(0.972) TCGA-D3-A2JF-06 2 96950119 96950119 G A SNRNP200 Missense_Mutation p.H1457Y 0.44 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JF-06 2 99861793 99861793 C T LYG2 Missense_Mutation p.E105K 0.14 deleterious(0.01) probably_damaging(0.942) TCGA-D3-A2JF-06 3 102171898 102171898 G A ZPLD1 Missense_Mutation p.G97E 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 3 108172946 108172946 C T MYH15 Missense_Mutation p.R789K 0.48 deleterious(0.02) benign(0.018) TCGA-D3-A2JF-06 3 108172974 108172974 C T MYH15 Missense_Mutation p.G780R 0.32 deleterious(0.01) benign(0.062) TCGA-D3-A2JF-06 3 11059544 11059544 C T SLC6A1 Missense_Mutation p.P85L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 3 111794183 111794183 C T TMPRSS7 Missense_Mutation p.S474F 0.37 tolerated(0.67) benign(0.017) TCGA-D3-A2JF-06 3 113082325 113082325 T C WDR52 Missense_Mutation p.S924G 0.23 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JF-06 3 118870139 118870139 G A C3orf30 Silent p.%3D 0.32 TCGA-D3-A2JF-06 3 119101169 119101169 C T ARHGAP31 Silent p.A154A 0.19 TCGA-D3-A2JF-06 3 120840528 120840528 G A STXBP5L Missense_Mutation p.D216N 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 3 121345810 121345810 G A FBXO40 3'UTR 0.40 TCGA-D3-A2JF-06 3 121659821 121659821 G A SLC15A2 Missense_Mutation p.M719I 0.29 tolerated(0.11) benign(0.001) TCGA-D3-A2JF-06 3 12194866 12194866 C T TIMP4 3'UTR 0.23 TCGA-D3-A2JF-06 3 121980473 121980473 G A CASR Missense_Mutation p.M197I 0.32 tolerated(0.2) possibly_damaging(0.779) TCGA-D3-A2JF-06 3 122002825 122002825 G A CASR Nonsense_Mutation p.W685* 0.32 TCGA-D3-A2JF-06 3 122353901 122353901 G A PARP15 Missense_Mutation p.S536N 0.41 tolerated(0.44) benign(0.124) TCGA-D3-A2JF-06 3 122631135 122631135 C A SEMA5B Missense_Mutation p.G981V 0.24 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JF-06 3 122634725 122634725 C T SEMA5B Silent p.G621G 0.32 TCGA-D3-A2JF-06 3 123044230 123044230 G A ADCY5 Missense_Mutation p.A676V 0.36 tolerated(0.21) benign(0.006) TCGA-D3-A2JF-06 3 123427623 123427623 C T MYLK Missense_Mutation p.E688K 0.41 deleterious(0) benign(0.007) TCGA-D3-A2JF-06 3 123452976 123452976 C T MYLK Silent p.E289E 0.42 TCGA-D3-A2JF-06 3 124053168 124053168 G A KALRN Silent p.G489G 0.37 TCGA-D3-A2JF-06 3 126747078 126747078 G C PLXNA1 Missense_Mutation p.G1522R 0.35 deleterious(0) possibly_damaging(0.511) TCGA-D3-A2JF-06 3 127411127 127411127 G A MGLL Missense_Mutation p.P286S 0.40 deleterious(0.01) possibly_damaging(0.505) TCGA-D3-A2JF-06 3 129239141 129239141 C T IFT122 3'UTR 0.20 TCGA-D3-A2JF-06 3 12977616 12977616 G A IQSEC1 Silent p.P314P 0.36 TCGA-D3-A2JF-06 3 130095498 130095498 G A COL6A5 Silent p.V162V 0.31 TCGA-D3-A2JF-06 3 132213988 132213988 C T DNAJC13 Missense_Mutation p.P1333L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 3 132242500 132242500 A T DNAJC13 Missense_Mutation p.E2001D 0.34 deleterious(0.01) benign(0.02) TCGA-D3-A2JF-06 3 133099474 133099474 C T TMEM108 Missense_Mutation p.P307S 0.39 tolerated_low_confidence(0.2) possibly_damaging(0.587) TCGA-D3-A2JF-06 3 135969367 135969367 G A PCCB Silent p.G50G 0.45 TCGA-D3-A2JF-06 3 138376566 138376566 G A PIK3CB Nonsense_Mutation p.Q970* 0.34 TCGA-D3-A2JF-06 3 138739000 138739000 C T PRR23B Missense_Mutation p.M168I 0.36 tolerated(0.12) possibly_damaging(0.596) TCGA-D3-A2JF-06 3 1443211 1443211 T G CNTN6 Silent p.S933S 0.48 TCGA-D3-A2JF-06 3 14561731 14561731 C T GRIP2 RNA 0.35 TCGA-D3-A2JF-06 3 147108974 147108974 C T ZIC4 Missense_Mutation p.D300N 0.12 deleterious(0) probably_damaging(0.949) TCGA-D3-A2JF-06 3 14799168 14799168 C T C3orf20 Missense_Mutation p.S744F 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 3 14862279 14862279 G A FGD5 Silent p.E567E 0.25 TCGA-D3-A2JF-06 3 14939016 14939016 G A FGD5 Missense_Mutation p.D917N 0.45 deleterious(0.02) benign(0.436) TCGA-D3-A2JF-06 3 151056366 151056366 C T P2RY12 Missense_Mutation p.G90R 0.37 tolerated(0.05) possibly_damaging(0.582) TCGA-D3-A2JF-06 3 151155689 151155689 C T IGSF10 Silent p.G2220G 0.46 TCGA-D3-A2JF-06 3 151155798 151155798 G A IGSF10 Missense_Mutation p.S2184F 0.35 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JF-06 3 154055907 154055907 G A GPR149 Nonsense_Mutation p.R593* 0.31 TCGA-D3-A2JF-06 3 160232959 160232959 A G KPNA4 Intron 0.55 TCGA-D3-A2JF-06 3 164905637 164905637 C T SLITRK3 3'UTR 0.29 TCGA-D3-A2JF-06 3 164906724 164906724 A G SLITRK3 Missense_Mutation p.L632P 0.17 tolerated(0.31) benign(0) TCGA-D3-A2JF-06 3 167167182 167167182 C T SERPINI2 Missense_Mutation p.E325K 0.30 deleterious(0.02) possibly_damaging(0.745) TCGA-D3-A2JF-06 3 167277932 167277932 C T WDR49 Missense_Mutation p.G191S 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JF-06 3 169540103 169540103 G A LRRIQ4 Missense_Mutation p.E132K 0.25 tolerated(0.07) possibly_damaging(0.609) TCGA-D3-A2JF-06 3 170716067 170716067 C T SLC2A2 Missense_Mutation p.G430E 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2JF-06 3 172835511 172835511 C T SPATA16 Missense_Mutation p.G4E 0.30 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D3-A2JF-06 3 178941890 178941890 G A PIK3CA Missense_Mutation p.E737K 0.39 tolerated(0.07) benign(0.008) TCGA-D3-A2JF-06 3 179096507 179096507 C T MFN1 Missense_Mutation p.P523S 0.27 deleterious(0.01) benign(0) TCGA-D3-A2JF-06 3 180320171 180320171 C T TTC14 Missense_Mutation p.P41L 0.19 tolerated(0.1) benign(0.165) TCGA-D3-A2JF-06 3 183446572 183446572 C T YEATS2 Missense_Mutation p.H249Y 0.31 deleterious(0.04) possibly_damaging(0.745) TCGA-D3-A2JF-06 3 183888557 183888557 C T DVL3 3'UTR 0.38 TCGA-D3-A2JF-06 3 184107206 184107206 C A CHRD Missense_Mutation p.S955Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-D3-A2JF-06 3 185997655 185997655 C T DGKG Silent p.L259L 0.36 TCGA-D3-A2JF-06 3 186370169 186370169 C T FETUB Missense_Mutation p.P300S 0.25 tolerated(0.13) benign(0.222) TCGA-D3-A2JF-06 3 186459464 186459464 C T KNG1 Missense_Mutation p.R427C 0.39 deleterious(0.03) possibly_damaging(0.513) TCGA-D3-A2JF-06 3 191179128 191179128 C T PYDC2 Silent p.F59F 0.35 TCGA-D3-A2JF-06 3 193176957 193176957 C T ATP13A4 Silent p.A529A 0.39 TCGA-D3-A2JF-06 3 194062528 194062528 C T CPN2 Missense_Mutation p.E302K 0.40 deleterious(0.05) benign(0.144) TCGA-D3-A2JF-06 3 194392955 194392955 C T LSG1 5'UTR 0.25 TCGA-D3-A2JF-06 3 195477772 195477772 C T MUC4 Missense_Mutation p.D5287N 0.43 benign(0.002) TCGA-D3-A2JF-06 3 195501115 195501115 C T MUC4 Silent p.V4335V 0.35 TCGA-D3-A2JF-06 3 2928874 2928874 G A CNTN4 Silent p.G302G 0.32 TCGA-D3-A2JF-06 3 2942391 2942391 A T CNTN4 Missense_Mutation p.K321N 0.33 tolerated(0.3) possibly_damaging(0.889) TCGA-D3-A2JF-06 3 3067886 3067886 C T CNTN4 Silent p.I529I 0.39 TCGA-D3-A2JF-06 3 36779778 36779778 G A DCLK3 Missense_Mutation p.L125F 0.33 tolerated(0.05) possibly_damaging(0.744) TCGA-D3-A2JF-06 3 36884144 36884144 C T TRANK1 Missense_Mutation p.G1706E 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 3 37163158 37163158 A T LRRFIP2 Missense_Mutation p.S85T 0.34 deleterious(0.03) possibly_damaging(0.84) TCGA-D3-A2JF-06 3 38354490 38354490 G A SLC22A14 Nonsense_Mutation p.W315* 0.50 TCGA-D3-A2JF-06 3 38357943 38357943 C T SLC22A14 Missense_Mutation p.S554F 0.42 tolerated(0.7) benign(0.004) TCGA-D3-A2JF-06 3 38601666 38601666 C T SCN5A Missense_Mutation p.G1406E 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 3 38601667 38601667 C T SCN5A Missense_Mutation p.G1406R 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 3 38646284 38646284 C T SCN5A Missense_Mutation p.G485E 0.20 tolerated(0.17) benign(0.278) TCGA-D3-A2JF-06 3 38798531 38798531 G A SCN10A Missense_Mutation p.S357F 0.18 tolerated(0.46) possibly_damaging(0.904) TCGA-D3-A2JF-06 3 3888447 3888447 G A LRRN1 Missense_Mutation p.D708N 0.24 tolerated(0.16) probably_damaging(0.984) TCGA-D3-A2JF-06 3 38949462 38949462 G A SCN11A Missense_Mutation p.S484F 0.31 deleterious(0.02) possibly_damaging(0.59) TCGA-D3-A2JF-06 3 42732406 42732406 C T KLHL40 Silent p.L555L 0.48 TCGA-D3-A2JF-06 3 43389845 43389845 C T SNRK Silent p.V698V 0.30 TCGA-D3-A2JF-06 3 45817382 45817382 C T SLC6A20 Silent p.R151R 0.31 TCGA-D3-A2JF-06 3 46399826 46399826 G A CCR2 Missense_Mutation p.E270K 0.29 tolerated(0.3) benign(0.034) TCGA-D3-A2JF-06 3 46414563 46414563 A T CCR5 Missense_Mutation p.N57I 0.30 deleterious(0.01) benign(0.392) TCGA-D3-A2JF-06 3 46571458 46571458 G A LRRC2 Missense_Mutation p.S237L 0.42 tolerated(0.08) benign(0.004) TCGA-D3-A2JF-06 3 46622761 46622761 G A TDGF1 3'UTR 0.25 TCGA-D3-A2JF-06 3 4738879 4738879 G A ITPR1 Missense_Mutation p.E1429K 0.33 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JF-06 3 48461503 48461503 G A PLXNB1 Missense_Mutation p.S731F 0.31 tolerated(0.48) benign(0.004) TCGA-D3-A2JF-06 3 48616711 48616711 C T COL7A1 Splice_Site p.X1770_splice 0.22 TCGA-D3-A2JF-06 3 49274001 49274001 G A CCDC36 Nonsense_Mutation p.W26* 0.40 TCGA-D3-A2JF-06 3 49836409 49836409 G A CDHR4 Intron 0.31 TCGA-D3-A2JF-06 3 50252883 50252883 G A SLC38A3 RNA 0.24 TCGA-D3-A2JF-06 3 50329915 50329915 C T IFRD2 5'Flank 0.26 TCGA-D3-A2JF-06 3 50329960 50329960 G A IFRD2 5'Flank 0.38 TCGA-D3-A2JF-06 3 51251600 51251600 C T DOCK3 Missense_Mutation p.R392W 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 3 51297694 51297694 C T DOCK3 Silent p.F764F 0.26 TCGA-D3-A2JF-06 3 51399305 51399305 G A DOCK3 Missense_Mutation p.M1674I 0.39 tolerated_low_confidence(0.45) benign(0.005) TCGA-D3-A2JF-06 3 51679737 51679737 C T RAD54L2 Silent p.V929V 0.13 TCGA-D3-A2JF-06 3 52257892 52257892 G A TLR9 Missense_Mutation p.S301F 0.25 tolerated(0.71) benign(0.013) TCGA-D3-A2JF-06 3 52584443 52584443 G A PBRM1 Silent p.L1524L 0.37 TCGA-D3-A2JF-06 3 53845398 53845398 C T CACNA1D Silent p.L2171L 0.40 TCGA-D3-A2JF-06 3 54958913 54958913 G A LRTM1 Silent p.L113L 0.48 TCGA-D3-A2JF-06 3 56207538 56207538 C T ERC2 Missense_Mutation p.R362Q 0.36 deleterious(0) probably_damaging(0.911) TCGA-D3-A2JF-06 3 57902870 57902870 C T SLMAP Intron 0.50 TCGA-D3-A2JF-06 3 58095013 58095013 C T FLNB Silent p.V721V 0.24 TCGA-D3-A2JF-06 3 58095799 58095799 G A FLNB Missense_Mutation p.D796N 0.38 deleterious(0.03) possibly_damaging(0.882) TCGA-D3-A2JF-06 3 62385095 62385095 C T CADPS Missense_Mutation p.E1350K 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A2JF-06 3 67058673 67058673 C T KBTBD8 Missense_Mutation p.S557F 0.34 deleterious(0.01) benign(0.077) TCGA-D3-A2JF-06 3 69111310 69111310 G A UBA3 Silent p.T238T 0.32 TCGA-D3-A2JF-06 3 7340486 7340486 G A GRM7 Silent p.V284V 0.34 TCGA-D3-A2JF-06 3 77147247 77147247 G A ROBO2 Silent p.T64T 0.46 TCGA-D3-A2JF-06 3 85984961 85984961 G A CADM2 Missense_Mutation p.E242K 0.28 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JF-06 3 86114842 86114842 C T CADM2 Missense_Mutation p.S386F 0.27 deleterious(0.03) benign(0.007) TCGA-D3-A2JF-06 3 8675568 8675568 G A SSUH2 Intron 0.30 TCGA-D3-A2JF-06 3 9547721 9547721 G A LHFPL4 Silent p.S191S 0.39 TCGA-D3-A2JF-06 3 96963084 96963084 T G EPHA6 Missense_Mutation p.F520C 0.38 tolerated(0.17) possibly_damaging(0.51) TCGA-D3-A2JF-06 3 98307605 98307605 T C CPOX Missense_Mutation p.E302G 0.35 deleterious(0.05) possibly_damaging(0.611) TCGA-D3-A2JF-06 3 99569165 99569165 C T FILIP1L Missense_Mutation p.R452K 0.32 tolerated(1) benign(0.003) TCGA-D3-A2JF-06 3 9984768 9984768 C T CRELD1 Silent p.A275A 0.32 TCGA-D3-A2JF-06 4 106647957 106647957 A G GSTCD Silent p.G372G 0.21 TCGA-D3-A2JF-06 4 107845207 107845207 G A DKK2 Silent p.F228F 0.20 TCGA-D3-A2JF-06 4 108969925 108969925 G A LEF1 Intron 0.51 TCGA-D3-A2JF-06 4 109667988 109667988 C T ETNPPL Missense_Mutation p.G368R 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JF-06 4 110862273 110862273 G A EGF Missense_Mutation p.R100K 0.19 tolerated(0.24) benign(0.05) TCGA-D3-A2JF-06 4 115750982 115750982 T A NDST4 Missense_Mutation p.K821N 0.54 deleterious(0.02) benign(0.087) TCGA-D3-A2JF-06 4 115997547 115997547 G A NDST4 Missense_Mutation p.P216S 0.19 deleterious(0.03) benign(0.022) TCGA-D3-A2JF-06 4 118975246 118975246 C T NDST3 Nonsense_Mutation p.Q61* 0.41 TCGA-D3-A2JF-06 4 119952507 119952507 G A SYNPO2 Silent p.V859V 0.21 TCGA-D3-A2JF-06 4 121631533 121631533 G A PRDM5 Silent p.A553A 0.28 TCGA-D3-A2JF-06 4 121958698 121958698 G A NDNF Missense_Mutation p.S143F 0.40 deleterious(0) possibly_damaging(0.819) TCGA-D3-A2JF-06 4 123226035 123226035 G A KIAA1109 Missense_Mutation p.R3190Q 0.51 probably_damaging(0.99) TCGA-D3-A2JF-06 4 126328292 126328292 C T FAT4 Silent p.I1855I 0.17 TCGA-D3-A2JF-06 4 138451538 138451538 C T PCDH18 Missense_Mutation p.E569K 0.37 tolerated(0.2) probably_damaging(0.999) TCGA-D3-A2JF-06 4 142649122 142649122 G A IL15 Silent p.T75T 0.17 TCGA-D3-A2JF-06 4 142649124 142649124 A T IL15 Missense_Mutation p.E76V 0.17 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A2JF-06 4 148985583 148985583 G C ARHGAP10 Missense_Mutation p.A733P 0.51 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JF-06 4 152638129 152638129 G A PET112 Missense_Mutation p.P180L 0.24 tolerated(0.48) benign(0.002) TCGA-D3-A2JF-06 4 152640637 152640637 G A PET112 Silent p.N127N 0.27 TCGA-D3-A2JF-06 4 154336016 154336016 C T MND1 3'UTR 0.33 TCGA-D3-A2JF-06 4 154624139 154624139 C T TLR2 Missense_Mutation p.S27F 0.42 tolerated(0.42) benign(0.027) TCGA-D3-A2JF-06 4 154702528 154702528 G A SFRP2 3'UTR 0.28 TCGA-D3-A2JF-06 4 154702801 154702801 C T SFRP2 Silent p.R230R 0.17 TCGA-D3-A2JF-06 4 155219180 155219180 G A DCHS2 Nonsense_Mutation p.Q1641* 0.38 TCGA-D3-A2JF-06 4 155510618 155510618 C A FGA Missense_Mutation p.D51Y 0.45 deleterious(0) probably_damaging(0.94) TCGA-D3-A2JF-06 4 155719191 155719191 G A RBM46 Missense_Mutation p.R127Q 0.43 deleterious(0.03) probably_damaging(0.97) TCGA-D3-A2JF-06 4 156634361 156634361 C T GUCY1A3 Missense_Mutation p.L400F 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 4 158057765 158057765 G A GLRB Missense_Mutation p.E148K 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A2JF-06 4 158057798 158057798 G A GLRB Missense_Mutation p.E159K 0.46 deleterious(0) possibly_damaging(0.689) TCGA-D3-A2JF-06 4 1730261 1730261 C T TACC3 Missense_Mutation p.P378S 0.13 tolerated(0.19) benign(0.005) TCGA-D3-A2JF-06 4 175898020 175898020 C T ADAM29 Silent p.F448F 0.44 TCGA-D3-A2JF-06 4 178882054 178882054 G A LINC01098 Nonsense_Mutation p.W17* 0.49 TCGA-D3-A2JF-06 4 185940190 185940190 G A HELT Silent p.P36P 0.49 TCGA-D3-A2JF-06 4 186997827 186997827 G A TLR3 Silent p.G18G 0.21 TCGA-D3-A2JF-06 4 187003926 187003926 G A TLR3 Missense_Mutation p.M362I 0.30 tolerated(0.06) benign(0.033) TCGA-D3-A2JF-06 4 187005027 187005027 G A TLR3 Silent p.R729R 0.20 TCGA-D3-A2JF-06 4 187130106 187130106 C T CYP4V2 Missense_Mutation p.P393L 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 4 187171545 187171545 C T KLKB1 Silent p.I249I 0.19 TCGA-D3-A2JF-06 4 187540264 187540264 G A FAT1 Silent p.F2492F 0.45 TCGA-D3-A2JF-06 4 189068457 189068457 C T TRIML1 Silent p.S446S 0.24 TCGA-D3-A2JF-06 4 20597426 20597426 G A SLIT2 Missense_Mutation p.G1097S 0.44 tolerated(0.21) probably_damaging(1) TCGA-D3-A2JF-06 4 20597427 20597427 G A SLIT2 Missense_Mutation p.G1097D 0.43 tolerated(0.2) probably_damaging(1) TCGA-D3-A2JF-06 4 20597447 20597447 G A SLIT2 Missense_Mutation p.E1104K 0.22 tolerated(0.16) probably_damaging(0.998) TCGA-D3-A2JF-06 4 23815318 23815318 A G PPARGC1A Silent p.S596S 0.53 TCGA-D3-A2JF-06 4 23815737 23815737 C T PPARGC1A Missense_Mutation p.E457K 0.41 deleterious(0) possibly_damaging(0.507) TCGA-D3-A2JF-06 4 25408827 25408827 C T ANAPC4 Silent p.D461D 0.12 TCGA-D3-A2JF-06 4 27024254 27024254 C T STIM2 Missense_Mutation p.S634L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-D3-A2JF-06 4 2744022 2744022 C A TNIP2 Nonsense_Mutation p.E418* 0.29 TCGA-D3-A2JF-06 4 36134888 36134888 G A ARAP2 Silent p.P1129P 0.41 TCGA-D3-A2JF-06 4 39881398 39881398 C T PDS5A Missense_Mutation p.E648K 0.46 tolerated(0.24) benign(0.018) TCGA-D3-A2JF-06 4 40440317 40440317 G A RBM47 Silent p.F198F 0.62 TCGA-D3-A2JF-06 4 40778159 40778159 G A NSUN7 Missense_Mutation p.V307I 0.46 tolerated(0.47) benign(0.059) TCGA-D3-A2JF-06 4 46066497 46066497 G A GABRG1 Missense_Mutation p.P196S 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 4 46125833 46125833 C T GABRG1 Missense_Mutation p.G33E 0.45 tolerated(0.39) probably_damaging(0.994) TCGA-D3-A2JF-06 4 48073661 48073661 C T TXK Missense_Mutation p.G463E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 4 49009302 49009302 C T CWH43 Missense_Mutation p.S382F 0.27 tolerated(0.17) benign(0.096) TCGA-D3-A2JF-06 4 52926998 52926998 C T SPATA18 Silent p.L82L 0.17 TCGA-D3-A2JF-06 4 52945033 52945033 C T SPATA18 Silent p.L385L 0.17 TCGA-D3-A2JF-06 4 54424055 54424055 G A LNX1 Intron 0.46 TCGA-D3-A2JF-06 4 55140786 55140786 G A PDGFRA Nonsense_Mutation p.W549* 0.12 TCGA-D3-A2JF-06 4 55948779 55948779 C T KDR Missense_Mutation p.R1229Q 0.22 tolerated(0.62) benign(0.356) TCGA-D3-A2JF-06 4 5857877 5857877 C T CRMP1 Silent p.Q271Q 0.15 TCGA-D3-A2JF-06 4 6066641 6066641 C T JAKMIP1 Missense_Mutation p.R466K 0.33 deleterious(0.03) possibly_damaging(0.626) TCGA-D3-A2JF-06 4 69093756 69093756 G A TMPRSS11B Missense_Mutation p.S375F 0.14 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 4 69337254 69337254 G A TMPRSS11E Missense_Mutation p.D135N 0.21 tolerated(0.48) benign(0.001) TCGA-D3-A2JF-06 4 69817322 69817322 C T UGT2A3 Missense_Mutation p.V53I 0.38 tolerated(0.13) probably_damaging(0.986) TCGA-D3-A2JF-06 4 69817323 69817323 C T UGT2A3 Silent p.E52E 0.38 TCGA-D3-A2JF-06 4 70070294 70070294 G A UGT2B11 Silent p.I388I 0.16 TCGA-D3-A2JF-06 4 70156447 70156447 G A UGT2B28 Missense_Mutation p.G410R 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 4 70455304 70455304 C T UGT2A1 Missense_Mutation p.R623Q 0.47 deleterious(0.03) possibly_damaging(0.782) TCGA-D3-A2JF-06 4 70513132 70513132 G A UGT2A1 Silent p.P77P 0.21 TCGA-D3-A2JF-06 4 71472126 71472126 C T AMBN Silent p.F341F 0.31 TCGA-D3-A2JF-06 4 71508428 71508428 C T ENAM Missense_Mutation p.R429C 0.14 deleterious(0.02) possibly_damaging(0.663) TCGA-D3-A2JF-06 4 74269991 74269991 C T ALB 5'UTR 0.17 TCGA-D3-A2JF-06 4 75250454 75250454 C T EREG Nonsense_Mutation p.R147* 0.26 TCGA-D3-A2JF-06 4 77661319 77661319 C T SHROOM3 Missense_Mutation p.L665F 0.28 deleterious(0.03) probably_damaging(0.973) TCGA-D3-A2JF-06 4 77661968 77661968 C T SHROOM3 Missense_Mutation p.P881L 0.22 tolerated(0.17) benign(0.085) TCGA-D3-A2JF-06 4 80328892 80328892 G A GK2 Missense_Mutation p.R155C 0.43 deleterious(0.01) benign(0.248) TCGA-D3-A2JF-06 4 8216228 8216228 C T SH3TC1 Silent p.I134I 0.21 TCGA-D3-A2JF-06 4 84231902 84231902 C T HPSE Missense_Mutation p.R272Q 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A2JF-06 4 84518604 84518604 C T AGPAT9 Missense_Mutation p.S311L 0.17 deleterious(0) probably_damaging(0.952) TCGA-D3-A2JF-06 4 85729554 85729554 G A WDFY3 Missense_Mutation p.P788S 0.25 tolerated(0.21) benign(0.014) TCGA-D3-A2JF-06 4 88766826 88766826 G A MEPE Missense_Mutation p.G269E 0.33 tolerated(0.17) benign(0.263) TCGA-D3-A2JF-06 4 90034415 90034415 T G TIGD2 Missense_Mutation p.V97G 0.24 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JF-06 4 95583617 95583617 C T PDLIM5 Missense_Mutation p.P573S 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 4 9785081 9785081 C T DRD5 Silent p.F476F 0.45 TCGA-D3-A2JF-06 5 112901647 112901647 C T YTHDC2 Missense_Mutation p.L925F 0.39 deleterious(0) possibly_damaging(0.881) TCGA-D3-A2JF-06 5 115335570 115335570 G A AQPEP Missense_Mutation p.E496K 0.26 tolerated(0.21) benign(0.049) TCGA-D3-A2JF-06 5 115338984 115338984 G A AQPEP Silent p.V648V 0.38 TCGA-D3-A2JF-06 5 115348125 115348125 C T AQPEP Missense_Mutation p.R768C 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A2JF-06 5 118968492 118968492 G A FAM170A Silent p.V40V 0.50 TCGA-D3-A2JF-06 5 121776194 121776194 G A SNCAIP Intron 0.29 TCGA-D3-A2JF-06 5 122950191 122950191 A T CSNK1G3 3'UTR 0.29 TCGA-D3-A2JF-06 5 122950192 122950192 C T CSNK1G3 3'UTR 0.30 TCGA-D3-A2JF-06 5 129040031 129040031 G T ADAMTS19 Missense_Mutation p.D1081Y 0.35 deleterious(0.04) benign(0.27) TCGA-D3-A2JF-06 5 131298347 131298347 G A ACSL6 Missense_Mutation p.R580W 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 131409494 131409494 G A CSF2 5'UTR 0.49 TCGA-D3-A2JF-06 5 132198244 132198244 G A GDF9 Silent p.I134I 0.40 TCGA-D3-A2JF-06 5 137230203 137230203 C T PKD2L2 Silent p.V143V 0.27 TCGA-D3-A2JF-06 5 13751296 13751296 G A DNAH5 Missense_Mutation p.P3701L 0.29 possibly_damaging(0.908) TCGA-D3-A2JF-06 5 137542246 137542246 G A CDC23 Missense_Mutation p.S121F 0.39 deleterious(0) probably_damaging(0.954) TCGA-D3-A2JF-06 5 13770869 13770869 G A DNAH5 Silent p.T3198T 0.34 TCGA-D3-A2JF-06 5 13792274 13792274 C T DNAH5 Silent p.V2759V 0.33 TCGA-D3-A2JF-06 5 13862820 13862820 C T DNAH5 Missense_Mutation p.E1545K 0.30 possibly_damaging(0.621) TCGA-D3-A2JF-06 5 13876802 13876802 G A DNAH5 Silent p.S1129S 0.38 TCGA-D3-A2JF-06 5 13900349 13900349 C T DNAH5 Missense_Mutation p.R742Q 0.21 possibly_damaging(0.553) TCGA-D3-A2JF-06 5 139907953 139907953 C T ANKHD1 Missense_Mutation p.P1808S 0.33 benign(0.16) TCGA-D3-A2JF-06 5 139909125 139909125 G A ANKHD1 Silent p.K2198K 0.38 TCGA-D3-A2JF-06 5 140186720 140186720 C T PCDHA4 5'Flank 0.26 TCGA-D3-A2JF-06 5 140188634 140188634 C T PCDHA4 Missense_Mutation p.P621L 0.36 tolerated_low_confidence(0.07) benign(0.013) TCGA-D3-A2JF-06 5 140229541 140229541 C T PCDHA9 Silent p.N487N 0.36 TCGA-D3-A2JF-06 5 140347637 140347637 G A PCDHAC2 Missense_Mutation p.R429Q 0.36 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JF-06 5 140431353 140431353 G A PCDHB1 Missense_Mutation p.D100N 0.42 deleterious(0) possibly_damaging(0.764) TCGA-D3-A2JF-06 5 140431406 140431406 C T PCDHB1 Silent p.F117F 0.43 TCGA-D3-A2JF-06 5 140474550 140474550 G A PCDHB2 Missense_Mutation p.G59E 0.41 tolerated_low_confidence(0.35) benign(0.006) TCGA-D3-A2JF-06 5 140475313 140475313 C T PCDHB2 Silent p.S313S 0.27 TCGA-D3-A2JF-06 5 140476702 140476702 C T PCDHB2 Silent p.F776F 0.25 TCGA-D3-A2JF-06 5 140481699 140481699 C T PCDHB3 Missense_Mutation p.S489L 0.26 deleterious_low_confidence(0) benign(0.157) TCGA-D3-A2JF-06 5 140554863 140554863 C T PCDHB7 3'UTR 0.31 TCGA-D3-A2JF-06 5 140554864 140554864 C T PCDHB7 3'UTR 0.31 TCGA-D3-A2JF-06 5 140559700 140559700 G A PCDHB8 Silent p.L695L 0.22 TCGA-D3-A2JF-06 5 140561967 140561967 C T PCDHB16 5'UTR 0.25 TCGA-D3-A2JF-06 5 140572435 140572435 C T PCDHB10 Silent p.L104L 0.33 TCGA-D3-A2JF-06 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-D3-A2JF-06 5 140730414 140730414 C T PCDHGB1 Missense_Mutation p.P196L 0.29 tolerated(0.12) benign(0.062) TCGA-D3-A2JF-06 5 143853460 143853460 C T KCTD16 Missense_Mutation p.S357L 0.26 deleterious(0.02) benign(0.054) TCGA-D3-A2JF-06 5 145393487 145393487 C T SH3RF2 Missense_Mutation p.L308F 0.32 tolerated(0.13) probably_damaging(0.999) TCGA-D3-A2JF-06 5 145862240 145862240 C T TCERG1 Missense_Mutation p.P658S 0.36 deleterious(0) unknown(0) TCGA-D3-A2JF-06 5 146778731 146778731 C T DPYSL3 Missense_Mutation p.G513R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 147449895 147449895 C T SPINK5 Missense_Mutation p.H31Y 0.23 deleterious(0.05) benign(0.15) TCGA-D3-A2JF-06 5 147516549 147516549 G A SPINK5 Missense_Mutation p.E1094K 0.35 deleterious_low_confidence(0) benign(0.001) TCGA-D3-A2JF-06 5 147928256 147928256 G A HTR4 Missense_Mutation p.H110Y 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 148579948 148579948 G C ABLIM3 Missense_Mutation p.Q135H 0.35 tolerated(0.66) benign(0.001) TCGA-D3-A2JF-06 5 148627398 148627398 G A ABLIM3 Silent p.S535S 0.44 TCGA-D3-A2JF-06 5 148682047 148682047 C T AFAP1L1 Missense_Mutation p.P132S 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 5 148682048 148682048 C T AFAP1L1 Missense_Mutation p.P132L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 5 149225552 149225552 C T PPARGC1B Intron 0.44 TCGA-D3-A2JF-06 5 149792327 149792327 C T CD74 5'Flank 0.28 TCGA-D3-A2JF-06 5 149792328 149792328 C T CD74 5'Flank 0.28 TCGA-D3-A2JF-06 5 151202145 151202145 C T GLRA1 3'Flank 0.45 TCGA-D3-A2JF-06 5 151775057 151775057 G A NMUR2 Silent p.S300S 0.45 TCGA-D3-A2JF-06 5 153181966 153181966 C T GRIA1 Silent p.I822I 0.36 TCGA-D3-A2JF-06 5 154254880 154254880 A T CNOT8 Nonsense_Mutation p.K254* 0.24 TCGA-D3-A2JF-06 5 156964947 156964947 G A ADAM19 Missense_Mutation p.P102S 0.36 tolerated(0.1) benign(0.021) TCGA-D3-A2JF-06 5 159686486 159686486 G A CCNJL Silent p.V239V 0.32 TCGA-D3-A2JF-06 5 160761908 160761908 G A GABRB2 Missense_Mutation p.S228F 0.31 deleterious(0) probably_damaging(0.962) TCGA-D3-A2JF-06 5 16670951 16670951 G A MYO10 Missense_Mutation p.S1856F 0.41 deleterious(0) possibly_damaging(0.58) TCGA-D3-A2JF-06 5 167517616 167517616 G A TENM2 Nonsense_Mutation p.W518* 0.29 TCGA-D3-A2JF-06 5 167995997 167995997 G A PANK3 Missense_Mutation p.P12L 0.30 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JF-06 5 167995998 167995998 G A PANK3 Missense_Mutation p.P12S 0.31 deleterious(0) probably_damaging(0.954) TCGA-D3-A2JF-06 5 168233482 168233482 G A SLIT3 Missense_Mutation p.P302S 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 5 170145782 170145782 G A KCNIP1 Missense_Mutation p.E39K 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2JF-06 5 170232732 170232732 G A GABRP Missense_Mutation p.G185E 0.40 tolerated(0.71) benign(0.009) TCGA-D3-A2JF-06 5 176305269 176305269 C T UNC5A Silent p.L632L 0.41 TCGA-D3-A2JF-06 5 178391810 178391810 C T ZNF454 Silent p.I135I 0.33 TCGA-D3-A2JF-06 5 178552138 178552138 G A ADAMTS2 Missense_Mutation p.R932W 0.44 tolerated(0.08) benign(0.024) TCGA-D3-A2JF-06 5 179250931 179250931 T A SQSTM1 Missense_Mutation p.N125K 0.28 deleterious(0.01) possibly_damaging(0.673) TCGA-D3-A2JF-06 5 180048602 180048602 C T FLT4 Missense_Mutation p.E654K 0.47 tolerated(0.33) possibly_damaging(0.881) TCGA-D3-A2JF-06 5 180475063 180475063 G A BTNL9 Silent p.V82V 0.21 TCGA-D3-A2JF-06 5 21783575 21783575 C T CDH12 Missense_Mutation p.D429N 0.32 tolerated(0.06) possibly_damaging(0.476) TCGA-D3-A2JF-06 5 31267739 31267739 G A CDH6 Silent p.R53R 0.34 TCGA-D3-A2JF-06 5 32415193 32415193 G A ZFR Missense_Mutation p.T222I 0.33 tolerated(0.06) benign(0.134) TCGA-D3-A2JF-06 5 33576994 33576994 G A ADAMTS12 Missense_Mutation p.P1046L 0.36 tolerated(0.56) benign(0) TCGA-D3-A2JF-06 5 34005933 34005933 G A AMACR Silent p.L107L 0.32 TCGA-D3-A2JF-06 5 35065415 35065415 C T PRLR Missense_Mutation p.V549M 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 5 35667297 35667297 G A SPEF2 Missense_Mutation p.E431K 0.31 deleterious(0.02) possibly_damaging(0.629) TCGA-D3-A2JF-06 5 35700683 35700683 G A SPEF2 Missense_Mutation p.G743S 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 35776358 35776358 G A SPEF2 Splice_Site p.X1360_splice 0.30 TCGA-D3-A2JF-06 5 35873660 35873660 C T IL7R Nonsense_Mutation p.R206* 0.36 TCGA-D3-A2JF-06 5 35965770 35965770 G A UGT3A1 Silent p.F187F 0.38 TCGA-D3-A2JF-06 5 36035913 36035913 C T UGT3A2 Missense_Mutation p.D487N 0.45 tolerated(0.06) possibly_damaging(0.537) TCGA-D3-A2JF-06 5 36137373 36137373 T A LMBRD2 Intron 0.24 TCGA-D3-A2JF-06 5 37342742 37342742 G A NUP155 Silent p.I334I 0.19 TCGA-D3-A2JF-06 5 37815934 37815934 G A GDNF Missense_Mutation p.A169V 0.34 deleterious(0.03) benign(0.021) TCGA-D3-A2JF-06 5 40999860 40999860 G A MROH2B Silent p.L1502L 0.19 TCGA-D3-A2JF-06 5 41009403 41009403 G A MROH2B Silent p.I1133I 0.26 TCGA-D3-A2JF-06 5 41010132 41010132 T A MROH2B Missense_Mutation p.Q1062L 0.35 tolerated(0.15) benign(0.012) TCGA-D3-A2JF-06 5 41012777 41012777 C T MROH2B Missense_Mutation p.G1015S 0.31 tolerated(0.26) benign(0.191) TCGA-D3-A2JF-06 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-D3-A2JF-06 5 41850261 41850261 G A OXCT1 Silent p.I145I 0.25 TCGA-D3-A2JF-06 5 52221309 52221309 G A ITGA1 Missense_Mutation p.G869R 0.38 deleterious(0.05) possibly_damaging(0.898) TCGA-D3-A2JF-06 5 54618224 54618224 C T SKIV2L2 Silent p.F68F 0.36 TCGA-D3-A2JF-06 5 5489324 5489324 C T KIAA0947 Missense_Mutation p.P2228S 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 5489325 5489325 C T KIAA0947 Missense_Mutation p.P2228L 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 5 55202113 55202113 C T IL31RA Nonsense_Mutation p.Q417* 0.18 TCGA-D3-A2JF-06 5 64483850 64483850 C T ADAMTS6 Nonsense_Mutation p.W968* 0.31 TCGA-D3-A2JF-06 5 64483972 64483972 G A ADAMTS6 Silent p.I927I 0.39 TCGA-D3-A2JF-06 5 66396403 66396403 C T MAST4 Silent p.P351P 0.15 TCGA-D3-A2JF-06 5 66396404 66396404 C T MAST4 Missense_Mutation p.R352C 0.14 probably_damaging(1) TCGA-D3-A2JF-06 5 66479788 66479788 G A CD180 Nonsense_Mutation p.Q295* 0.41 TCGA-D3-A2JF-06 5 70671819 70671819 C T RP11-136K7.2 Intron 0.18 TCGA-D3-A2JF-06 5 70898446 70898446 C T MCCC2 Missense_Mutation p.P166L 0.37 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D3-A2JF-06 5 71756999 71756999 G A ZNF366 Missense_Mutation p.L109F 0.42 tolerated_low_confidence(0.71) benign(0.024) TCGA-D3-A2JF-06 5 74032749 74032749 G A GFM2 Missense_Mutation p.A461V 0.33 tolerated(0.11) benign(0.089) TCGA-D3-A2JF-06 5 76621481 76621481 C T PDE8B Missense_Mutation p.L173F 0.30 tolerated(0.06) probably_damaging(0.964) TCGA-D3-A2JF-06 5 77684718 77684718 C T SCAMP1 Missense_Mutation p.P39S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 5 79361257 79361257 G A THBS4 Missense_Mutation p.R384Q 0.36 tolerated(0.68) benign(0.001) TCGA-D3-A2JF-06 5 80504233 80504233 G A RASGRF2 Missense_Mutation p.M1044I 0.22 tolerated(0.11) benign(0.124) TCGA-D3-A2JF-06 5 89921011 89921011 C T GPR98 Missense_Mutation p.P208L 0.27 benign(0) TCGA-D3-A2JF-06 5 89971928 89971928 G A GPR98 Missense_Mutation p.G1782E 0.32 probably_damaging(0.999) TCGA-D3-A2JF-06 5 89979454 89979454 G A GPR98 Missense_Mutation p.D1906N 0.30 probably_damaging(0.91) TCGA-D3-A2JF-06 5 89990378 89990378 C T GPR98 Missense_Mutation p.P2602L 0.39 probably_damaging(0.995) TCGA-D3-A2JF-06 5 90049474 90049474 G A GPR98 Silent p.V3735V 0.42 TCGA-D3-A2JF-06 5 94903657 94903657 C T ARSK Missense_Mutation p.P107L 0.34 deleterious(0.02) possibly_damaging(0.456) TCGA-D3-A2JF-06 6 101296521 101296521 G A ASCC3 Missense_Mutation p.H102Y 0.78 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 6 106553106 106553106 G A PRDM1 Silent p.G357G 0.57 TCGA-D3-A2JF-06 6 106555378 106555378 T C PRDM1 3'UTR 0.54 TCGA-D3-A2JF-06 6 106969185 106969185 G A AIM1 Missense_Mutation p.E960K 0.47 tolerated(0.15) benign(0.424) TCGA-D3-A2JF-06 6 10913150 10913150 C T SYCP2L Silent p.F354F 0.19 TCGA-D3-A2JF-06 6 109867326 109867326 G A AK9 Missense_Mutation p.P990L 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JF-06 6 110036290 110036290 C T FIG4 Silent p.L26L 0.65 TCGA-D3-A2JF-06 6 130536382 130536382 A G SAMD3 Silent p.L13L 0.52 TCGA-D3-A2JF-06 6 133072469 133072469 C T VNN2 Missense_Mutation p.G339R 0.25 deleterious(0.02) benign(0.269) TCGA-D3-A2JF-06 6 136934327 136934327 A T MAP3K5 Missense_Mutation p.F782L 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A2JF-06 6 146127223 146127223 A C FBXO30 Missense_Mutation p.Y107D 0.57 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JF-06 6 155451251 155451251 C T TIAM2 Silent p.S298S 0.59 TCGA-D3-A2JF-06 6 155458328 155458328 G A TIAM2 Silent p.E404E 0.41 TCGA-D3-A2JF-06 6 155578900 155578900 G A TFB1M 3'UTR 0.56 TCGA-D3-A2JF-06 6 161007579 161007579 T G LPA Missense_Mutation p.E1344A 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JF-06 6 167708113 167708113 G A UNC93A Missense_Mutation p.G66S 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 6 167754644 167754644 G A TTLL2 Missense_Mutation p.G419D 0.59 deleterious(0.04) probably_damaging(0.974) TCGA-D3-A2JF-06 6 168467476 168467476 G A FRMD1 Silent p.F140F 0.54 TCGA-D3-A2JF-06 6 24533825 24533825 C T ALDH5A1 Missense_Mutation p.S511F 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 6 25594645 25594645 C T LRRC16A Silent p.V1003V 0.31 TCGA-D3-A2JF-06 6 25770459 25770459 C T SLC17A4 Silent p.F154F 0.36 TCGA-D3-A2JF-06 6 25773755 25773755 C T SLC17A4 Silent p.G280G 0.33 TCGA-D3-A2JF-06 6 25779481 25779481 C T SLC17A4 3'UTR 0.37 TCGA-D3-A2JF-06 6 26087697 26087697 T A HFE Missense_Mutation p.L10H 0.27 deleterious(0) possibly_damaging(0.838) TCGA-D3-A2JF-06 6 26452276 26452276 C T BTN3A3 Silent p.F464F 0.31 TCGA-D3-A2JF-06 6 28483437 28483437 C T GPX6 Silent p.R28R 0.28 TCGA-D3-A2JF-06 6 28540642 28540642 C T SCAND3 Missense_Mutation p.M1008I 0.44 tolerated(0.21) benign(0.016) TCGA-D3-A2JF-06 6 28542686 28542686 C T SCAND3 Missense_Mutation p.R599K 0.23 tolerated_low_confidence(0.69) benign(0) TCGA-D3-A2JF-06 6 29054843 29054843 G A OR2B3 Silent p.F61F 0.28 TCGA-D3-A2JF-06 6 29142132 29142132 G A OR2J2 Silent p.R240R 0.33 TCGA-D3-A2JF-06 6 29454813 29454813 G A MAS1L Silent p.F289F 0.28 TCGA-D3-A2JF-06 6 29556432 29556432 G A OR2H2 Silent p.G237G 0.51 TCGA-D3-A2JF-06 6 30890280 30890280 C T VARS2 Silent p.S692S 0.21 TCGA-D3-A2JF-06 6 30920811 30920811 G A DPCR1 Missense_Mutation p.D1367N 0.46 tolerated(0.19) probably_damaging(0.962) TCGA-D3-A2JF-06 6 31170442 31170442 G T HCG27 Missense_Mutation p.V140F 0.26 tolerated_low_confidence(0.15) unknown(0) TCGA-D3-A2JF-06 6 31608042 31608042 C T BAG6 Silent p.R1030R 0.41 TCGA-D3-A2JF-06 6 32038093 32038093 G A TNXB Missense_Mutation p.P1697S 0.48 probably_damaging(0.997) TCGA-D3-A2JF-06 6 32065818 32065818 C T TNXB Missense_Mutation p.G53E 0.44 benign(0.145) TCGA-D3-A2JF-06 6 32170166 32170166 C T NOTCH4 Missense_Mutation p.E1148K 0.28 tolerated(0.34) probably_damaging(0.993) TCGA-D3-A2JF-06 6 32609902 32609902 G A HLA-DQA1 Missense_Mutation p.S162N 0.30 tolerated(0.35) benign(0.008) TCGA-D3-A2JF-06 6 32713721 32713721 G A HLA-DQA2 Missense_Mutation p.S162N 0.09 tolerated(0.35) benign(0.02) TCGA-D3-A2JF-06 6 32790048 32790048 G A TAP2 3'UTR 0.19 TCGA-D3-A2JF-06 6 32800149 32800149 G A TAP2 Silent p.S411S 0.22 TCGA-D3-A2JF-06 6 32904834 32904834 C T HLA-DMB Intron 0.56 TCGA-D3-A2JF-06 6 32905011 32905011 C T HLA-DMB Missense_Mutation p.G187E 0.50 deleterious(0.01) benign(0.085) TCGA-D3-A2JF-06 6 3298437 3298437 G A SLC22A23 Silent p.S366S 0.24 TCGA-D3-A2JF-06 6 33157238 33157238 G A COL11A2 Missense_Mutation p.P31S 0.42 benign(0.015) TCGA-D3-A2JF-06 6 33247113 33247113 C T WDR46 Silent p.K591K 0.21 TCGA-D3-A2JF-06 6 35547918 35547918 C T FKBP5 Silent p.K307K 0.25 TCGA-D3-A2JF-06 6 35716365 35716365 C T ARMC12 Silent p.L274L 0.44 TCGA-D3-A2JF-06 6 36262016 36262016 C T PNPLA1 Missense_Mutation p.T185I 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A2JF-06 6 36293091 36293091 C T C6orf222 Silent p.E379E 0.34 TCGA-D3-A2JF-06 6 39851747 39851747 C T DAAM2 Missense_Mutation p.P619S 0.28 tolerated(0.79) benign(0.002) TCGA-D3-A2JF-06 6 40359569 40359569 G A LRFN2 3'UTR 0.33 TCGA-D3-A2JF-06 6 4068974 4068974 G A FAM217A Missense_Mutation p.L495F 0.45 tolerated(1) benign(0.004) TCGA-D3-A2JF-06 6 4068976 4068976 G A FAM217A Missense_Mutation p.S494F 0.45 deleterious(0.01) benign(0.379) TCGA-D3-A2JF-06 6 43019204 43019204 G A CUL7 Silent p.V329V 0.49 TCGA-D3-A2JF-06 6 46787274 46787274 C T MEP1A Missense_Mutation p.S130F 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 6 46977397 46977397 C T GPR110 Missense_Mutation p.G592R 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 6 51910841 51910841 G A PKHD1 Silent p.S851S 0.37 TCGA-D3-A2JF-06 6 54095636 54095636 C T MLIP Missense_Mutation p.P413L 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JF-06 6 54095637 54095637 C T MLIP Silent p.P413P 0.23 TCGA-D3-A2JF-06 6 54173468 54173468 C T TINAG Silent p.T40T 0.46 TCGA-D3-A2JF-06 6 54805802 54805802 G A FAM83B Missense_Mutation p.G678E 0.41 tolerated(0.1) benign(0.022) TCGA-D3-A2JF-06 6 55684473 55684473 G A BMP5 Silent p.I221I 0.28 TCGA-D3-A2JF-06 6 55925593 55925593 C T COL21A1 Missense_Mutation p.G785R 0.43 deleterious(0) probably_damaging(0.974) TCGA-D3-A2JF-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.32 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JF-06 6 56496083 56496083 G A DST Silent p.T819T 0.53 TCGA-D3-A2JF-06 6 63990057 63990057 C T LGSN Missense_Mutation p.E467K 0.37 tolerated(0.23) benign(0.023) TCGA-D3-A2JF-06 6 70961858 70961858 C T COL9A1 Missense_Mutation p.G613R 0.45 probably_damaging(1) TCGA-D3-A2JF-06 6 74001760 74001760 C T KHDC1 Missense_Mutation p.R56K 0.24 deleterious_low_confidence(0.05) unknown(0) TCGA-D3-A2JF-06 6 74073455 74073455 G A KHDC3L Missense_Mutation p.E176K 0.72 deleterious(0) probably_damaging(0.929) TCGA-D3-A2JF-06 6 74073594 74073594 G A KHDC3L 3'UTR 0.69 TCGA-D3-A2JF-06 6 7581377 7581377 G A DSP Missense_Mutation p.E1652K 0.35 benign(0.11) TCGA-D3-A2JF-06 6 86333812 86333812 G A SYNCRIP Missense_Mutation p.R229C 0.51 deleterious(0.04) benign(0.362) TCGA-D3-A2JF-06 6 97246510 97246510 C T GPR63 Silent p.L366L 0.65 TCGA-D3-A2JF-06 6 97246961 97246961 C T GPR63 Missense_Mutation p.G216E 0.54 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 7 100350347 100350347 C T ZAN Silent p.I873I 0.23 TCGA-D3-A2JF-06 7 100484424 100484424 C T SRRT Silent p.P552P 0.35 TCGA-D3-A2JF-06 7 100552019 100552019 C T MUC3A Missense_Mutation p.S257F 0.11 deleterious(0.01) benign(0.015) TCGA-D3-A2JF-06 7 100780299 100780299 C T SERPINE1 Missense_Mutation p.R369C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 7 103051974 103051974 C T SLC26A5 Missense_Mutation p.D155N 0.33 tolerated(0.28) probably_damaging(0.995) TCGA-D3-A2JF-06 7 103185765 103185765 C T RELN Missense_Mutation p.G2110E 0.18 tolerated(0.05) probably_damaging(0.914) TCGA-D3-A2JF-06 7 103206793 103206793 C T RELN Missense_Mutation p.G1605E 0.07 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JF-06 7 105739611 105739611 G A SYPL1 Missense_Mutation p.P81S 0.45 deleterious(0) probably_damaging(0.975) TCGA-D3-A2JF-06 7 106513253 106513253 C T PIK3CG Silent p.A719A 0.19 TCGA-D3-A2JF-06 7 107735767 107735767 G A LAMB4 Missense_Mutation p.P459L 0.25 deleterious(0.02) possibly_damaging(0.791) TCGA-D3-A2JF-06 7 113518696 113518696 C T PPP1R3A Missense_Mutation p.M817I 0.28 tolerated(0.19) benign(0.005) TCGA-D3-A2JF-06 7 11452338 11452338 C T THSD7A Silent p.E1209E 0.15 TCGA-D3-A2JF-06 7 116340221 116340221 C T MET Silent p.A361A 0.10 TCGA-D3-A2JF-06 7 116862019 116862019 T G ST7 Missense_Mutation p.F514C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 7 117066916 117066916 G A ASZ1 Missense_Mutation p.S60L 0.23 tolerated(0.12) benign(0.02) TCGA-D3-A2JF-06 7 117282491 117282491 G A CFTR Splice_Site p.X1240_splice 0.27 TCGA-D3-A2JF-06 7 117282638 117282638 G A CFTR Silent p.V1288V 0.28 TCGA-D3-A2JF-06 7 117424495 117424495 G A CTTNBP2 Silent p.S694S 0.24 TCGA-D3-A2JF-06 7 120965493 120965493 G A WNT16 5'Flank 0.15 TCGA-D3-A2JF-06 7 128486460 128486460 G A FLNC Missense_Mutation p.G1357E 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 7 129107204 129107204 C T STRIP2 Missense_Mutation p.S597L 0.25 deleterious(0) possibly_damaging(0.487) TCGA-D3-A2JF-06 7 131155681 131155681 C T MKLN1 Missense_Mutation p.S670L 0.32 deleterious(0.03) benign(0.04) TCGA-D3-A2JF-06 7 133848262 133848262 C T LRGUK Silent p.L303L 0.53 TCGA-D3-A2JF-06 7 133943020 133943020 C T LRGUK Missense_Mutation p.S737F 0.12 tolerated(0.1) benign(0.004) TCGA-D3-A2JF-06 7 135315146 135315146 C T NUP205 Nonsense_Mutation p.Q1663* 0.40 TCGA-D3-A2JF-06 7 136699839 136699839 C T CHRM2 Missense_Mutation p.S76F 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 7 137304591 137304591 G A DGKI Silent p.I324I 0.44 TCGA-D3-A2JF-06 7 138601950 138601950 G A KIAA1549 Silent p.L808L 0.45 TCGA-D3-A2JF-06 7 138732465 138732465 G A ZC3HAV1 Missense_Mutation p.P862S 0.22 tolerated(0.74) benign(0.043) TCGA-D3-A2JF-06 7 141754619 141754619 C T MGAM Silent p.S1075S 0.34 TCGA-D3-A2JF-06 7 141764245 141764245 C T MGAM Silent p.I1469I 0.21 TCGA-D3-A2JF-06 7 142149026 142149026 C T TRBV5-5 Missense_Mutation p.R82Q 0.18 deleterious(0.01) benign(0.222) TCGA-D3-A2JF-06 7 142239731 142239731 G A TRBV9 Missense_Mutation p.S50F 0.21 tolerated(0.07) benign(0.378) TCGA-D3-A2JF-06 7 142334851 142334851 C T TRBV20-1 Silent p.S91S 0.36 TCGA-D3-A2JF-06 7 142364675 142364675 C A TRBV24-1 Missense_Mutation p.Q104K 0.51 deleterious(0.02) possibly_damaging(0.612) TCGA-D3-A2JF-06 7 142428809 142428809 G A TRBV28 Missense_Mutation p.D57N 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JF-06 7 142460392 142460392 C T PRSS1 Missense_Mutation p.L189F 0.12 deleterious(0) possibly_damaging(0.769) TCGA-D3-A2JF-06 7 142655503 142655503 G A KEL Missense_Mutation p.S138F 0.49 tolerated(0.79) benign(0.248) TCGA-D3-A2JF-06 7 143079411 143079411 C T ZYX Silent p.F93F 0.44 TCGA-D3-A2JF-06 7 143747630 143747630 G A OR2A5 Missense_Mutation p.G46R 0.45 deleterious(0.02) possibly_damaging(0.482) TCGA-D3-A2JF-06 7 144380014 144380014 C T TPK1 Missense_Mutation p.G58E 0.16 tolerated(0.11) benign(0.19) TCGA-D3-A2JF-06 7 146536986 146536986 G A CNTNAP2 Missense_Mutation p.G131E 0.21 tolerated(0.58) benign(0.07) TCGA-D3-A2JF-06 7 1484878 1484878 G A MICALL2 Silent p.A276A 0.14 TCGA-D3-A2JF-06 7 149475059 149475059 G A ZNF467 5'Flank 0.34 TCGA-D3-A2JF-06 7 1516266 1516266 G A INTS1 Silent p.F1697F 0.41 TCGA-D3-A2JF-06 7 18067187 18067187 C T PRPS1L1 Missense_Mutation p.M73I 0.40 tolerated(0.08) benign(0.179) TCGA-D3-A2JF-06 7 18975554 18975554 C T HDAC9 Silent p.L976L 0.46 TCGA-D3-A2JF-06 7 20418721 20418721 C T ITGB8 Missense_Mutation p.P146S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 7 20421462 20421462 G A ITGB8 Missense_Mutation p.G305E 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 7 21840765 21840765 G A DNAH11 Missense_Mutation p.R3353Q 0.44 benign(0.005) TCGA-D3-A2JF-06 7 21847523 21847523 C T DNAH11 Silent p.S3403S 0.44 TCGA-D3-A2JF-06 7 2296551 2296551 G A SNX8 Silent p.I414I 0.11 TCGA-D3-A2JF-06 7 24708140 24708140 G A MPP6 Silent p.Q325Q 0.48 TCGA-D3-A2JF-06 7 27211411 27211411 G A HOXA10 3'UTR 0.30 TCGA-D3-A2JF-06 7 30692948 30692948 C T CRHR2 3'UTR 0.42 TCGA-D3-A2JF-06 7 33039749 33039749 A C FKBP9 Missense_Mutation p.N417H 0.17 tolerated(0.14) probably_damaging(0.943) TCGA-D3-A2JF-06 7 34851398 34851398 C T NPSR1 Missense_Mutation p.A134V 0.43 deleterious(0) benign(0.191) TCGA-D3-A2JF-06 7 38304989 38304989 C T TRGC1 Missense_Mutation p.G98R 0.56 tolerated(0.18) benign(0.051) TCGA-D3-A2JF-06 7 38725192 38725192 G A FAM183B 3'UTR 0.16 TCGA-D3-A2JF-06 7 38725426 38725426 C T FAM183B Silent p.E60E 0.48 TCGA-D3-A2JF-06 7 39504009 39504009 C T POU6F2 Silent p.I600I 0.16 TCGA-D3-A2JF-06 7 41729272 41729272 G A INHBA Silent p.I419I 0.20 TCGA-D3-A2JF-06 7 4308209 4308209 C T SDK1 3'UTR 0.58 TCGA-D3-A2JF-06 7 43484247 43484247 G A HECW1 Silent p.T492T 0.32 TCGA-D3-A2JF-06 7 44192920 44192920 C T GCK Missense_Mutation p.R64H 0.19 deleterious(0.03) possibly_damaging(0.869) TCGA-D3-A2JF-06 7 44571383 44571383 C T NPC1L1 Missense_Mutation p.G870R 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 7 45007332 45007332 C T MYO1G Missense_Mutation p.D552N 0.53 tolerated(1) probably_damaging(0.999) TCGA-D3-A2JF-06 7 47968883 47968883 G A PKD1L1 Silent p.F326F 0.49 TCGA-D3-A2JF-06 7 48311757 48311757 C T ABCA13 Missense_Mutation p.P832S 0.38 benign(0.178) TCGA-D3-A2JF-06 7 48431662 48431662 G A ABCA13 Silent p.R3933R 0.22 TCGA-D3-A2JF-06 7 53103787 53103787 C T POM121L12 Silent p.I141I 0.22 TCGA-D3-A2JF-06 7 53103940 53103940 C T POM121L12 Silent p.F192F 0.43 TCGA-D3-A2JF-06 7 53104167 53104167 G A POM121L12 Nonsense_Mutation p.W268* 0.22 TCGA-D3-A2JF-06 7 55752867 55752867 C T RNU6-389P 5'Flank 0.59 TCGA-D3-A2JF-06 7 64439075 64439075 G A ZNF117 Missense_Mutation p.L292F 0.39 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JF-06 7 65579828 65579828 G A CRCP 5'UTR 0.18 TCGA-D3-A2JF-06 7 70885994 70885994 G A WBSCR17 Missense_Mutation p.E289K 0.46 tolerated(0.4) probably_damaging(0.993) TCGA-D3-A2JF-06 7 72657239 72657239 C T GTF2IRD2P1 RNA 0.19 TCGA-D3-A2JF-06 7 73030423 73030423 G T MLXIPL Silent p.I126I 0.34 TCGA-D3-A2JF-06 7 76826128 76826128 T C FGL2 Missense_Mutation p.N263S 0.38 tolerated(1) benign(0.138) TCGA-D3-A2JF-06 7 81374415 81374415 C T HGF Missense_Mutation p.G216E 0.18 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JF-06 7 81381528 81381528 C T HGF Missense_Mutation p.R178Q 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 7 82474748 82474748 G A PCLO Nonsense_Mutation p.Q4629* 0.26 TCGA-D3-A2JF-06 7 82545814 82545814 C T PCLO Missense_Mutation p.D3830N 0.21 unknown(0) TCGA-D3-A2JF-06 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.43 unknown(0) TCGA-D3-A2JF-06 7 82580054 82580054 C T PCLO Missense_Mutation p.E3284K 0.39 unknown(0) TCGA-D3-A2JF-06 7 82582230 82582230 G A PCLO Missense_Mutation p.S2680L 0.33 unknown(0) TCGA-D3-A2JF-06 7 86394514 86394514 G A GRM3 Missense_Mutation p.G18E 0.37 tolerated(0.34) benign(0.05) TCGA-D3-A2JF-06 7 87079386 87079386 T C ABCB4 Missense_Mutation p.K244R 0.21 tolerated(0.22) benign(0.11) TCGA-D3-A2JF-06 7 87138779 87138779 T A ABCB1 Missense_Mutation p.I1101L 0.14 tolerated(0.08) benign(0.012) TCGA-D3-A2JF-06 7 87436815 87436815 C T RUNDC3B Missense_Mutation p.H379Y 0.19 tolerated(0.07) benign(0.127) TCGA-D3-A2JF-06 7 87913428 87913428 G A STEAP4 Nonsense_Mutation p.Q53* 0.44 TCGA-D3-A2JF-06 7 94259138 94259138 G A SGCE Missense_Mutation p.S42F 0.48 tolerated(0.06) possibly_damaging(0.741) TCGA-D3-A2JF-06 7 99264686 99264686 A G CYP3A5 Silent p.S107S 0.43 TCGA-D3-A2JF-06 7 99314848 99314848 C T CYP3A7 Missense_Mutation p.R158K 0.36 tolerated(1) benign(0.005) TCGA-D3-A2JF-06 8 101014449 101014449 G A RGS22 Missense_Mutation p.S924F 0.33 deleterious(0) probably_damaging(0.938) TCGA-D3-A2JF-06 8 101601094 101601094 C T SNX31 Silent p.Q364Q 0.32 TCGA-D3-A2JF-06 8 101629886 101629886 C T SNX31 Missense_Mutation p.E132K 0.23 tolerated(0.23) benign(0.014) TCGA-D3-A2JF-06 8 105367210 105367210 C T DCSTAMP Missense_Mutation p.P379S 0.32 tolerated(0.31) benign(0.21) TCGA-D3-A2JF-06 8 10555209 10555209 C T C8orf74 Silent p.F114F 0.34 TCGA-D3-A2JF-06 8 108264174 108264174 C T ANGPT1 Missense_Mutation p.G469E 0.33 tolerated(0.27) probably_damaging(1) TCGA-D3-A2JF-06 8 108348406 108348406 C T ANGPT1 Missense_Mutation p.E183K 0.29 tolerated(0.08) probably_damaging(0.997) TCGA-D3-A2JF-06 8 108970357 108970357 G A RSPO2 Silent p.T189T 0.36 TCGA-D3-A2JF-06 8 110457518 110457518 T C PKHD1L1 Missense_Mutation p.V1807A 0.38 tolerated(1) benign(0.001) TCGA-D3-A2JF-06 8 110535510 110535510 C T PKHD1L1 Missense_Mutation p.L4127F 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2JF-06 8 113988197 113988197 G A CSMD3 Missense_Mutation p.S404L 0.35 tolerated_low_confidence(0.65) benign(0.001) TCGA-D3-A2JF-06 8 117778752 117778752 C T UTP23 5'UTR 0.28 TCGA-D3-A2JF-06 8 11853717 11853717 T A DEFB134 Missense_Mutation p.D15V 0.35 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-D3-A2JF-06 8 119592994 119592994 C T SAMD12 Missense_Mutation p.G51E 0.36 tolerated(0.4) benign(0.019) TCGA-D3-A2JF-06 8 11994955 11994955 A G USP17L2 Missense_Mutation p.F439L 0.13 tolerated(0.67) benign(0.004) TCGA-D3-A2JF-06 8 11994994 11994994 C T USP17L2 Missense_Mutation p.E426K 0.19 tolerated(0.3) benign(0.068) TCGA-D3-A2JF-06 8 121381667 121381667 C T COL14A1 Missense_Mutation p.P1752S 0.28 tolerated(0.1) benign(0.437) TCGA-D3-A2JF-06 8 125022946 125022946 G A FER1L6 Missense_Mutation p.D605N 0.36 deleterious(0.02) benign(0.424) TCGA-D3-A2JF-06 8 125463065 125463065 C T TRMT12 5'UTR 0.25 TCGA-D3-A2JF-06 8 125463066 125463066 C T TRMT12 5'UTR 0.16 TCGA-D3-A2JF-06 8 125989917 125989917 A T ZNF572 Missense_Mutation p.K469N 0.30 deleterious(0.02) possibly_damaging(0.602) TCGA-D3-A2JF-06 8 132002745 132002745 C T ADCY8 Missense_Mutation p.G335E 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JF-06 8 133141596 133141596 G A KCNQ3 Silent p.P844P 0.17 TCGA-D3-A2JF-06 8 134488296 134488296 G A ST3GAL1 5'UTR 0.32 TCGA-D3-A2JF-06 8 135649738 135649738 G A ZFAT Silent p.I138I 0.38 TCGA-D3-A2JF-06 8 139155261 139155261 C T FAM135B Missense_Mutation p.R1211Q 0.23 deleterious(0) probably_damaging(0.909) TCGA-D3-A2JF-06 8 139696712 139696712 C T COL22A1 Missense_Mutation p.G990R 0.36 unknown(0) TCGA-D3-A2JF-06 8 142222401 142222401 G A SLC45A4 Silent p.S681S 0.31 TCGA-D3-A2JF-06 8 143960599 143960599 C T CYP11B1 Missense_Mutation p.D82N 0.39 tolerated(0.33) benign(0.014) TCGA-D3-A2JF-06 8 144809116 144809116 G A FAM83H Nonsense_Mutation p.Q839* 0.21 TCGA-D3-A2JF-06 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.32 deleterious(0) probably_damaging(0.973) TCGA-D3-A2JF-06 8 17400855 17400855 C T SLC7A2 Missense_Mutation p.P43S 0.41 tolerated(0.16) benign(0.086) TCGA-D3-A2JF-06 8 1874623 1874623 C T ARHGEF10 Silent p.F897F 0.45 TCGA-D3-A2JF-06 8 22138965 22138965 G T PIWIL2 Missense_Mutation p.W121L 0.21 tolerated_low_confidence(0.66) benign(0) TCGA-D3-A2JF-06 8 22212892 22212892 G A PIWIL2 Nonsense_Mutation p.W932* 0.36 TCGA-D3-A2JF-06 8 22938510 22938510 G A RP11-875O11.2 RNA 0.19 TCGA-D3-A2JF-06 8 23306327 23306327 G A ENTPD4 Missense_Mutation p.S45L 0.42 tolerated(0.67) benign(0.003) TCGA-D3-A2JF-06 8 23538897 23538897 C T NKX3-1 Missense_Mutation p.R181Q 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 8 24193193 24193193 G A ADAM28 Intron 0.27 TCGA-D3-A2JF-06 8 24771991 24771991 G A NEFM Missense_Mutation p.D229N 0.36 deleterious(0) unknown(0) TCGA-D3-A2JF-06 8 25178514 25178514 G A DOCK5 Missense_Mutation p.E521K 0.33 deleterious(0.01) benign(0.347) TCGA-D3-A2JF-06 8 25718677 25718677 G A EBF2 Silent p.S410S 0.37 TCGA-D3-A2JF-06 8 27634475 27634475 C T ESCO2 Missense_Mutation p.S217F 0.22 tolerated(0.08) benign(0.316) TCGA-D3-A2JF-06 8 27779701 27779701 C T SCARA5 Silent p.L101L 0.33 TCGA-D3-A2JF-06 8 2806844 2806844 C T CSMD1 Missense_Mutation p.G3460E 0.33 probably_damaging(1) TCGA-D3-A2JF-06 8 28420432 28420432 T C FZD3 Silent p.H635H 0.25 TCGA-D3-A2JF-06 8 28575207 28575207 C T EXTL3 Missense_Mutation p.P544L 0.28 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A2JF-06 8 30690836 30690836 G A TEX15 Missense_Mutation p.P2779L 0.27 deleterious(0) possibly_damaging(0.9) TCGA-D3-A2JF-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.35 tolerated(1) benign(0.002) TCGA-D3-A2JF-06 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.39 probably_damaging(0.999) TCGA-D3-A2JF-06 8 33406164 33406164 G A RNF122 3'UTR 0.25 TCGA-D3-A2JF-06 8 35608171 35608171 C T UNC5D Silent p.L669L 0.31 TCGA-D3-A2JF-06 8 37633525 37633525 C T PROSC Silent p.F229F 0.25 TCGA-D3-A2JF-06 8 37730506 37730506 G A RAB11FIP1 Missense_Mutation p.P605L 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JF-06 8 385683 385683 C T FBXO25 Silent p.I119I 0.28 TCGA-D3-A2JF-06 8 38678044 38678044 C T TACC1 Missense_Mutation p.P428S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JF-06 8 3889600 3889600 C T CSMD1 Missense_Mutation p.G146E 0.33 probably_damaging(1) TCGA-D3-A2JF-06 8 39785559 39785559 T C IDO1 Missense_Mutation p.I356T 0.33 tolerated(0.38) benign(0.015) TCGA-D3-A2JF-06 8 39792728 39792728 C T IDO2 Missense_Mutation p.H5Y 0.31 tolerated_low_confidence(0.33) benign(0.001) TCGA-D3-A2JF-06 8 40011117 40011117 C T C8orf4 Silent p.I22I 0.41 TCGA-D3-A2JF-06 8 41547832 41547832 G A ANK1 Silent p.S1380S 0.32 TCGA-D3-A2JF-06 8 42586818 42586818 G A CHRNB3 Missense_Mutation p.G123D 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JF-06 8 42586860 42586860 C T CHRNB3 Missense_Mutation p.S137L 0.39 deleterious(0.03) benign(0.061) TCGA-D3-A2JF-06 8 42587197 42587197 C T CHRNB3 Silent p.F249F 0.36 TCGA-D3-A2JF-06 8 42587335 42587335 C T CHRNB3 Silent p.L295L 0.37 TCGA-D3-A2JF-06 8 48962467 48962467 C T UBE2V2 Missense_Mutation p.P74S 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A2JF-06 8 52321362 52321362 G T PXDNL Missense_Mutation p.P941H 0.46 deleterious(0) possibly_damaging(0.77) TCGA-D3-A2JF-06 8 52321468 52321468 C T PXDNL Missense_Mutation p.E906K 0.35 tolerated(0.07) probably_damaging(0.977) TCGA-D3-A2JF-06 8 54141948 54141948 C T OPRK1 Missense_Mutation p.R351K 0.32 tolerated(0.39) benign(0.001) TCGA-D3-A2JF-06 8 55534822 55534822 G A RP1 Missense_Mutation p.G254E 0.33 deleterious(0.05) benign(0.133) TCGA-D3-A2JF-06 8 55540684 55540684 T G RP1 Missense_Mutation p.H1414Q 0.31 tolerated(0.19) benign(0.02) TCGA-D3-A2JF-06 8 55542837 55542837 A G RP1 Missense_Mutation p.N2132S 0.26 tolerated(0.13) benign(0.016) TCGA-D3-A2JF-06 8 55542844 55542844 C T RP1 Silent p.F2134F 0.35 TCGA-D3-A2JF-06 8 59405029 59405029 A T CYP7A1 Silent p.A366A 0.24 TCGA-D3-A2JF-06 8 59405030 59405030 G A CYP7A1 Missense_Mutation p.A366V 0.24 tolerated(0.24) benign(0.162) TCGA-D3-A2JF-06 8 67485599 67485599 C T MYBL1 Missense_Mutation p.G538E 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JF-06 8 68165840 68165840 T C ARFGEF1 Silent p.T848T 0.46 TCGA-D3-A2JF-06 8 68184022 68184022 G A ARFGEF1 Missense_Mutation p.S496F 0.35 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A2JF-06 8 68939517 68939517 A G PREX2 Missense_Mutation p.T168A 0.38 tolerated(0.25) benign(0.005) TCGA-D3-A2JF-06 8 68956812 68956812 G T PREX2 Silent p.V310V 0.29 TCGA-D3-A2JF-06 8 69020454 69020454 G A PREX2 Silent p.V942V 0.33 TCGA-D3-A2JF-06 8 71510466 71510466 G A TRAM1 Missense_Mutation p.S71F 0.28 tolerated(0.53) benign(0.014) TCGA-D3-A2JF-06 8 73480284 73480284 C T KCNB2 Silent p.T105T 0.42 TCGA-D3-A2JF-06 8 73849114 73849114 C T KCNB2 Silent p.F508F 0.38 TCGA-D3-A2JF-06 8 77764874 77764874 G A ZFHX4 Missense_Mutation p.G1906E 0.25 probably_damaging(0.969) TCGA-D3-A2JF-06 8 77767009 77767009 G A ZFHX4 Missense_Mutation p.E2618K 0.53 possibly_damaging(0.731) TCGA-D3-A2JF-06 8 86126770 86126770 G A C8orf59 3'UTR 0.42 TCGA-D3-A2JF-06 8 87060883 87060883 G A PSKH2 Silent p.T322T 0.33 TCGA-D3-A2JF-06 8 87226776 87226776 G A SLC7A13 Silent p.L427L 0.35 TCGA-D3-A2JF-06 8 88249246 88249246 C T CNBD1 Missense_Mutation p.S226L 0.35 deleterious(0.01) possibly_damaging(0.754) TCGA-D3-A2JF-06 8 93017381 93017381 C T RUNX1T1 Missense_Mutation p.D246N 0.43 deleterious(0.03) benign(0.349) TCGA-D3-A2JF-06 8 94746976 94746976 G A RBM12B Missense_Mutation p.P555S 0.43 tolerated(0.08) benign(0.003) TCGA-D3-A2JF-06 8 95680314 95680314 G A ESRP1 Missense_Mutation p.E357K 0.34 deleterious(0.04) benign(0.295) TCGA-D3-A2JF-06 8 99208210 99208210 G A NIPAL2 Missense_Mutation p.L302F 0.33 tolerated(0.64) benign(0.026) TCGA-D3-A2JF-06 9 100116933 100116933 G A CCDC180 Missense_Mutation p.E1073K 0.28 deleterious(0.01) possibly_damaging(0.486) TCGA-D3-A2JF-06 9 100204113 100204113 C T TDRD7 Nonsense_Mutation p.Q271* 0.42 TCGA-D3-A2JF-06 9 101589156 101589156 G A GALNT12 Missense_Mutation p.D222N 0.36 deleterious(0.04) benign(0.053) TCGA-D3-A2JF-06 9 104188917 104188917 C T ALDOB Missense_Mutation p.G182R 0.29 tolerated(0.16) probably_damaging(1) TCGA-D3-A2JF-06 9 104192063 104192063 C T ALDOB Missense_Mutation p.E100K 0.20 tolerated(0.85) benign(0.014) TCGA-D3-A2JF-06 9 107266618 107266618 C T OR13F1 Silent p.V25V 0.44 TCGA-D3-A2JF-06 9 107361572 107361572 C T OR13C5 Silent p.G41G 0.36 TCGA-D3-A2JF-06 9 107588068 107588068 G A ABCA1 Missense_Mutation p.P813L 0.32 deleterious(0.01) benign(0.092) TCGA-D3-A2JF-06 9 109689114 109689114 C T ZNF462 Missense_Mutation p.S974F 0.30 probably_damaging(0.996) TCGA-D3-A2JF-06 9 114140879 114140879 C T KIAA0368 Missense_Mutation p.R1490Q 0.24 tolerated(0.39) benign(0.334) TCGA-D3-A2JF-06 9 114154101 114154101 A G KIAA0368 Silent p.V1210V 0.33 TCGA-D3-A2JF-06 9 117792609 117792609 G C TNC Missense_Mutation p.T1999S 0.46 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A2JF-06 9 117810645 117810645 C T TNC Silent p.R1582R 0.44 TCGA-D3-A2JF-06 9 117810648 117810648 C T TNC Silent p.Q1581Q 0.46 TCGA-D3-A2JF-06 9 117852935 117852935 C T TNC Silent p.E121E 0.21 TCGA-D3-A2JF-06 9 121929759 121929759 C T BRINP1 Missense_Mutation p.R630Q 0.42 tolerated(0.58) possibly_damaging(0.885) TCGA-D3-A2JF-06 9 123199718 123199718 G A CDK5RAP2 Silent p.S1270S 0.30 TCGA-D3-A2JF-06 9 123550194 123550194 C T FBXW2 Missense_Mutation p.D115N 0.39 tolerated(0.27) benign(0.003) TCGA-D3-A2JF-06 9 123550195 123550195 C T FBXW2 Silent p.Q114Q 0.40 TCGA-D3-A2JF-06 9 123921207 123921207 C T CNTRL Silent p.L1613L 0.16 TCGA-D3-A2JF-06 9 123943636 123943636 G A RAB14 3'UTR 0.38 TCGA-D3-A2JF-06 9 124064325 124064325 G A GSN Missense_Mutation p.D77N 0.24 tolerated(0.08) benign(0.214) TCGA-D3-A2JF-06 9 125273315 125273315 C T OR1J2 Missense_Mutation p.P79S 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-D3-A2JF-06 9 125315495 125315495 G A OR1N2 Missense_Mutation p.G16E 0.28 tolerated(0.92) probably_damaging(0.998) TCGA-D3-A2JF-06 9 125391069 125391069 G A OR1B1 Missense_Mutation p.S249F 0.45 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JF-06 9 131475331 131475331 G A PKN3 Missense_Mutation p.G279E 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 9 136315041 136315041 G A ADAMTS13 Missense_Mutation p.R1000H 0.19 deleterious(0.04) possibly_damaging(0.631) TCGA-D3-A2JF-06 9 136516866 136516866 G A DBH Silent p.V434V 0.50 TCGA-D3-A2JF-06 9 136555539 136555539 C T SARDH Missense_Mutation p.E678K 0.35 tolerated(0.06) possibly_damaging(0.745) TCGA-D3-A2JF-06 9 136597675 136597675 G A SARDH Missense_Mutation p.A127V 0.40 tolerated(0.09) possibly_damaging(0.906) TCGA-D3-A2JF-06 9 137622235 137622235 G A COL5A1 Missense_Mutation p.G360R 0.20 probably_damaging(0.972) TCGA-D3-A2JF-06 9 137653784 137653784 C T COL5A1 Missense_Mutation p.P650L 0.19 probably_damaging(0.987) TCGA-D3-A2JF-06 9 137777099 137777099 A T FCN2 Nonsense_Mutation p.K106* 0.42 TCGA-D3-A2JF-06 9 137777101 137777101 G A FCN2 Silent p.K106K 0.42 TCGA-D3-A2JF-06 9 138516106 138516106 C T GLT6D1 Missense_Mutation p.G223E 0.43 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A2JF-06 9 139910162 139910162 C T ABCA2 Missense_Mutation p.R1160H 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 9 139994250 139994250 C T MAN1B1 Missense_Mutation p.S278F 0.48 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JF-06 9 140328936 140328936 C T ENTPD8 3'UTR 0.17 TCGA-D3-A2JF-06 9 14842559 14842559 C T FREM1 Missense_Mutation p.R498Q 0.55 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JF-06 9 15192694 15192694 C T TTC39B Splice_Site p.X275_splice 0.41 TCGA-D3-A2JF-06 9 16436451 16436451 C T BNC2 Missense_Mutation p.E581K 0.57 deleterious(0.01) benign(0.275) TCGA-D3-A2JF-06 9 21216873 21216873 C T IFNA16 Silent p.R144R 0.56 TCGA-D3-A2JF-06 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.61 TCGA-D3-A2JF-06 9 21971121 21971121 G A CDKN2A Silent p.T79T 0.62 TCGA-D3-A2JF-06 9 27183467 27183467 G A TEK Silent p.R347R 0.53 TCGA-D3-A2JF-06 9 27949200 27949200 C T LINGO2 Silent p.G490G 0.61 TCGA-D3-A2JF-06 9 32543175 32543175 C T TOPORS Missense_Mutation p.V450I 0.37 tolerated(0.18) benign(0.05) TCGA-D3-A2JF-06 9 32632954 32632954 C T TAF1L Missense_Mutation p.G875E 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 9 3330346 3330346 G T RFX3 Missense_Mutation p.S129R 0.44 tolerated(0.17) possibly_damaging(0.61) TCGA-D3-A2JF-06 9 3330347 3330347 C T RFX3 Missense_Mutation p.S129N 0.44 tolerated(0.14) benign(0.055) TCGA-D3-A2JF-06 9 3346738 3346738 C T RFX3 Silent p.Q48Q 0.62 TCGA-D3-A2JF-06 9 43627884 43627884 G A SPATA31A6 Missense_Mutation p.S268L 0.30 deleterious(0.05) benign(0.059) TCGA-D3-A2JF-06 9 5233772 5233772 G A INSL4 Silent p.K105K 0.43 TCGA-D3-A2JF-06 9 75309467 75309467 G A TMC1 Missense_Mutation p.E25K 0.31 tolerated_low_confidence(0.36) unknown(0) TCGA-D3-A2JF-06 9 77377265 77377265 G A TRPM6 Missense_Mutation p.S1441F 0.38 tolerated_low_confidence(0.06) benign(0.009) TCGA-D3-A2JF-06 9 79267403 79267403 G A PRUNE2 Silent p.G2851G 0.24 TCGA-D3-A2JF-06 9 84532462 84532462 G A SPATA31D5P RNA 0.18 TCGA-D3-A2JF-06 9 84534422 84534422 C T SPATA31D5P RNA 0.34 TCGA-D3-A2JF-06 9 8521497 8521497 G A PTPRD Silent p.I247I 0.52 TCGA-D3-A2JF-06 9 85905523 85905523 C T FRMD3 Missense_Mutation p.G397D 0.17 tolerated(0.76) benign(0) TCGA-D3-A2JF-06 9 85958165 85958165 G A FRMD3 Missense_Mutation p.H138Y 0.14 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JF-06 9 86004545 86004545 G A FRMD3 Missense_Mutation p.R76C 0.42 deleterious(0) possibly_damaging(0.88) TCGA-D3-A2JF-06 9 86900947 86900947 G A SLC28A3 Silent p.L454L 0.35 TCGA-D3-A2JF-06 9 91605918 91605918 G A C9orf47 Missense_Mutation p.R3K 0.33 deleterious_low_confidence(0) benign(0.14) TCGA-D3-A2JF-06 9 96278314 96278314 C T FAM120A Missense_Mutation p.P394L 0.25 deleterious(0.03) benign(0.002) TCGA-D3-A2JF-06 9 97063357 97063357 G A ZNF169 Missense_Mutation p.R506K 0.19 deleterious(0.03) benign(0.063) TCGA-D3-A2JF-06 X 100118199 100118199 G A NOX1 Missense_Mutation p.H96Y 0.75 deleterious(0) possibly_damaging(0.811) TCGA-D3-A2JF-06 X 100532675 100532675 C T TAF7L Missense_Mutation p.E290K 0.78 deleterious(0.01) possibly_damaging(0.656) TCGA-D3-A2JF-06 X 100617210 100617210 G A BTK Missense_Mutation p.S180F 0.71 tolerated(0.08) benign(0.226) TCGA-D3-A2JF-06 X 102612693 102612693 A G WBP5 Silent p.E27E 0.21 TCGA-D3-A2JF-06 X 103432939 103432939 T A FAM199X Missense_Mutation p.S316R 0.25 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-D3-A2JF-06 X 105075050 105075050 C T NRK Missense_Mutation p.P21S 0.59 deleterious_low_confidence(0) benign(0.381) TCGA-D3-A2JF-06 X 110491825 110491825 T C CAPN6 Missense_Mutation p.I486V 0.74 tolerated(1) benign(0) TCGA-D3-A2JF-06 X 11204502 11204502 C T ARHGAP6 Missense_Mutation p.R376Q 0.65 deleterious(0.02) possibly_damaging(0.783) TCGA-D3-A2JF-06 X 114251824 114251824 G A IL13RA2 Silent p.F3F 0.67 TCGA-D3-A2JF-06 X 115586161 115586161 C T SLC6A14 Missense_Mutation p.H475Y 0.72 deleterious(0.04) benign(0.217) TCGA-D3-A2JF-06 X 119293221 119293221 G A RHOXF2 Missense_Mutation p.G127E 0.36 tolerated(0.3) probably_damaging(0.996) TCGA-D3-A2JF-06 X 119500506 119500506 G A ATP1B4 Missense_Mutation p.E64K 0.54 tolerated(0.22) benign(0.032) TCGA-D3-A2JF-06 X 122754787 122754787 G A THOC2 Missense_Mutation p.P1416S 0.75 tolerated(0.99) benign(0.002) TCGA-D3-A2JF-06 X 125299163 125299163 C T DCAF12L2 Missense_Mutation p.D249N 0.54 tolerated(0.37) benign(0.018) TCGA-D3-A2JF-06 X 130215550 130215550 C T ARHGAP36 5'UTR 0.71 TCGA-D3-A2JF-06 X 130215693 130215693 C T ARHGAP36 Silent p.I18I 0.70 TCGA-D3-A2JF-06 X 132833929 132833929 C T GPC3 Missense_Mutation p.R410Q 0.78 deleterious(0.02) benign(0.19) TCGA-D3-A2JF-06 X 13636087 13636087 G A EGFL6 Missense_Mutation p.M339I 0.77 tolerated(0.2) benign(0.002) TCGA-D3-A2JF-06 X 139866217 139866217 G A CDR1 Silent p.F105F 0.74 TCGA-D3-A2JF-06 X 1407772 1407772 G A CSF2RA Missense_Mutation p.R155Q 0.33 tolerated(0.33) benign(0.036) TCGA-D3-A2JF-06 X 140994042 140994042 C T MAGEC1 Silent p.F284F 0.59 TCGA-D3-A2JF-06 X 151092603 151092603 C T MAGEA4 Missense_Mutation p.S156F 0.76 tolerated(0.07) benign(0.238) TCGA-D3-A2JF-06 X 153132898 153132898 G A L1CAM Missense_Mutation p.H684Y 0.74 tolerated(0.08) possibly_damaging(0.609) TCGA-D3-A2JF-06 X 15332575 15332575 A C ASB11 Intron 0.66 TCGA-D3-A2JF-06 X 1553923 1553923 G A ASMTL Missense_Mutation p.S131F 0.26 tolerated(0.71) benign(0.042) TCGA-D3-A2JF-06 X 21627558 21627558 G A CNKSR2 Missense_Mutation p.G839R 0.77 deleterious(0.02) possibly_damaging(0.836) TCGA-D3-A2JF-06 X 23410835 23410835 G A PTCHD1 Silent p.R400R 0.72 TCGA-D3-A2JF-06 X 24197828 24197830 TCC AA ZFX Frame_Shift_Del p.I196Kfs*18 0.62 TCGA-D3-A2JF-06 X 30237516 30237516 C T MAGEB2 Silent p.F273F 0.83 TCGA-D3-A2JF-06 X 3229357 3229357 C T MXRA5 Missense_Mutation p.G2296E 0.77 deleterious(0.04) probably_damaging(0.924) TCGA-D3-A2JF-06 X 37028486 37028486 C G FAM47C Missense_Mutation p.P668R 0.76 tolerated(0.1) benign(0.28) TCGA-D3-A2JF-06 X 43639593 43639593 C T MAOB Missense_Mutation p.E359K 0.73 tolerated(0.08) benign(0.25) TCGA-D3-A2JF-06 X 43640713 43640713 T C MAOB Missense_Mutation p.N336S 0.55 tolerated(1) benign(0) TCGA-D3-A2JF-06 X 45010908 45010908 C T CXorf36 Missense_Mutation p.D431N 0.68 deleterious(0.01) possibly_damaging(0.737) TCGA-D3-A2JF-06 X 47442821 47442821 C T TIMP1 Missense_Mutation p.P3S 0.66 tolerated_low_confidence(0.23) benign(0.142) TCGA-D3-A2JF-06 X 47444824 47444824 C T TIMP1 Intron 0.62 TCGA-D3-A2JF-06 X 47487635 47487635 G A CFP Missense_Mutation p.S90L 0.27 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JF-06 X 47836085 47836085 G A ZNF182 Silent p.F467F 0.71 TCGA-D3-A2JF-06 X 48047157 48047157 C T SSX5 Silent p.R200R 0.70 TCGA-D3-A2JF-06 X 64721993 64721993 C T ZC3H12B Missense_Mutation p.P472L 0.69 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A2JF-06 X 65413476 65413476 C T HEPH Silent p.I509I 0.93 TCGA-D3-A2JF-06 X 67941949 67941949 G A STARD8 Missense_Mutation p.M840I 0.50 deleterious(0.03) benign(0.005) TCGA-D3-A2JF-06 X 73053119 73053119 G A XIST RNA 0.67 TCGA-D3-A2JF-06 X 73961408 73961408 G A KIAA2022 Missense_Mutation p.S995L 0.83 deleterious(0) possibly_damaging(0.732) TCGA-D3-A2JF-06 X 73962420 73962420 C T KIAA2022 Missense_Mutation p.D658N 0.83 tolerated(0.15) benign(0.017) TCGA-D3-A2JF-06 X 73963930 73963930 C A KIAA2022 Missense_Mutation p.K154N 0.76 deleterious(0.05) probably_damaging(0.992) TCGA-D3-A2JF-06 X 84520132 84520132 G A ZNF711 Missense_Mutation p.E263K 0.82 tolerated(0.2) possibly_damaging(0.81) TCGA-D3-A2JF-06 X 86869525 86869525 G A KLHL4 Missense_Mutation p.G227R 0.62 deleterious(0.05) probably_damaging(1) TCGA-D3-A2JF-06 X 88008524 88008524 G A CPXCR1 Missense_Mutation p.D37N 0.61 tolerated(0.12) possibly_damaging(0.908) TCGA-D3-A2JF-06 X 91132451 91132451 C T PCDH11X Silent p.I404I 0.15 TCGA-D3-A2JF-06 X 91132452 91132452 C T PCDH11X Missense_Mutation p.P405S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A2JF-06 X 99848968 99848968 G A TNMD Missense_Mutation p.R86K 0.74 tolerated(0.39) benign(0) TCGA-D3-A2JF-06 Y 23562899 23562899 C T RBMY2EP RNA 0.60 TCGA-D3-A2JF-06 Y 4966928 4966928 C T PCDH11Y Missense_Mutation p.P437S 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 10 86018377 86018377 G T RGR Missense_Mutation p.E290D 0.68 tolerated(0.24) benign(0.008) TCGA-D3-A2JG-06 10 95161230 95161230 G A MYOF Silent p.A354A 0.68 TCGA-D3-A2JG-06 10 95161231 95161231 G A MYOF Missense_Mutation p.A354V 0.66 deleterious(0.05) benign(0.003) TCGA-D3-A2JG-06 11 105774667 105774667 C T GRIA4 Missense_Mutation p.P338L 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2JG-06 11 5221880 5221880 C T OR51V1 Silent p.T17T 0.20 TCGA-D3-A2JG-06 11 63072194 63072194 G A SLC22A10 Silent p.R477R 0.38 TCGA-D3-A2JG-06 11 63138704 63138704 C T SLC22A9 Missense_Mutation p.S167L 0.31 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JG-06 11 65349567 65349567 C T EHBP1L1 Missense_Mutation p.P475L 0.48 deleterious(0) possibly_damaging(0.672) TCGA-D3-A2JG-06 11 654046 654046 G A DEAF1 Silent p.S503S 0.46 TCGA-D3-A2JG-06 11 73748584 73748584 C A C2CD3 Silent p.G1940G 0.38 TCGA-D3-A2JG-06 11 74015355 74015355 C T P4HA3 Silent p.R101R 0.41 TCGA-D3-A2JG-06 11 78372617 78372617 G A TENM4 Silent p.L2476L 0.39 TCGA-D3-A2JG-06 11 78380792 78380792 C T TENM4 Missense_Mutation p.G2200S 0.34 tolerated(0.19) probably_damaging(0.98) TCGA-D3-A2JG-06 12 31577540 31577540 C T DENND5B Missense_Mutation p.E774K 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JG-06 12 31577541 31577541 C T DENND5B Silent p.E773E 0.41 TCGA-D3-A2JG-06 12 39760859 39760859 T C KIF21A Silent p.Q236Q 0.40 TCGA-D3-A2JG-06 12 402015 402015 G A KDM5A Silent p.P1592P 0.30 TCGA-D3-A2JG-06 12 402016 402016 G A KDM5A Missense_Mutation p.P1592L 0.30 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A2JG-06 12 4488628 4488628 G A FGF23 Missense_Mutation p.H41Y 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 12 4488629 4488629 G A FGF23 Silent p.I40I 0.36 TCGA-D3-A2JG-06 12 57843480 57843480 G A INHBC Missense_Mutation p.R245K 0.48 tolerated(0.17) benign(0.013) TCGA-D3-A2JG-06 12 6859170 6859170 G A MLF2 Missense_Mutation p.R135W 0.31 deleterious(0) probably_damaging(0.953) TCGA-D3-A2JG-06 12 6859171 6859171 G A MLF2 Silent p.I134I 0.31 TCGA-D3-A2JG-06 12 7639175 7639175 G A CD163 Missense_Mutation p.S793F 0.43 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A2JG-06 12 78225316 78225316 G A NAV3 Silent p.P25P 0.34 TCGA-D3-A2JG-06 12 95914926 95914926 C T USP44 Missense_Mutation p.E596K 0.44 deleterious(0.01) possibly_damaging(0.507) TCGA-D3-A2JG-06 13 61102738 61102738 C T TDRD3 Missense_Mutation p.S460F 0.37 deleterious(0.03) possibly_damaging(0.622) TCGA-D3-A2JG-06 14 105201410 105201410 C T ADSSL1 Silent p.F125F 0.44 TCGA-D3-A2JG-06 14 34269592 34269592 C T NPAS3 Silent p.S693S 0.45 TCGA-D3-A2JG-06 14 38678811 38678811 C T SSTR1 Silent p.L73L 0.32 TCGA-D3-A2JG-06 14 65260293 65260293 G A SPTB Silent p.I696I 0.50 TCGA-D3-A2JG-06 14 68963883 68963883 C T RAD51B Intron 0.47 TCGA-D3-A2JG-06 14 70633363 70633363 C T SLC8A3 Missense_Mutation p.E593K 0.20 deleterious(0) probably_damaging(0.942) TCGA-D3-A2JG-06 16 20360463 20360463 C T UMOD Missense_Mutation p.E54K 0.52 tolerated(0.25) benign(0.124) TCGA-D3-A2JG-06 16 31073072 31073072 G - ZNF668 Frame_Shift_Del p.H416Tfs*15 0.33 TCGA-D3-A2JG-06 16 705369 705369 C T WDR90 Missense_Mutation p.S540F 0.47 deleterious(0.02) probably_damaging(0.991) TCGA-D3-A2JG-06 17 15234335 15234335 C T TEKT3 Missense_Mutation p.A190T 0.62 tolerated(0.22) benign(0.144) TCGA-D3-A2JG-06 17 17122455 17122455 G A FLCN Missense_Mutation p.P314S 0.56 tolerated(0.46) benign(0) TCGA-D3-A2JG-06 17 27016554 27016554 C T SUPT6H Missense_Mutation p.A1106V 0.10 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JG-06 17 61568584 61568584 G A ACE Silent p.R918R 0.44 TCGA-D3-A2JG-06 18 32834207 32834207 C T ZSCAN30 Missense_Mutation p.G231D 0.33 tolerated(0.19) benign(0.002) TCGA-D3-A2JG-06 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.34 TCGA-D3-A2JG-06 18 56204264 56204264 G A ALPK2 Missense_Mutation p.P1052L 0.33 tolerated(0.07) benign(0.21) TCGA-D3-A2JG-06 18 59212366 59212366 G A CDH20 Missense_Mutation p.R546K 0.31 tolerated(0.69) benign(0.052) TCGA-D3-A2JG-06 18 59212367 59212367 G A CDH20 Silent p.R546R 0.31 TCGA-D3-A2JG-06 18 61262349 61262349 G A SERPINB13 Silent p.G234G 0.38 TCGA-D3-A2JG-06 19 10079359 10079359 C T COL5A3 Missense_Mutation p.G1400R 0.33 unknown(0) TCGA-D3-A2JG-06 19 1013313 1013313 C A TMEM259 Silent p.V178V 0.37 TCGA-D3-A2JG-06 19 10574557 10574557 C T PDE4A Missense_Mutation p.A611V 0.40 tolerated(0.2) benign(0.395) TCGA-D3-A2JG-06 19 10574558 10574558 C T PDE4A Silent p.A611A 0.40 TCGA-D3-A2JG-06 19 10940994 10940994 C T DNM2 Missense_Mutation p.P828L 0.50 deleterious_low_confidence(0.03) benign(0.002) TCGA-D3-A2JG-06 19 10941011 10941011 C A DNM2 Silent p.R834R 0.50 TCGA-D3-A2JG-06 19 13184813 13184813 G A NFIX Missense_Mutation p.R264Q 0.32 tolerated(0.06) possibly_damaging(0.848) TCGA-D3-A2JG-06 19 13184814 13184814 G A NFIX Silent p.R264R 0.33 TCGA-D3-A2JG-06 19 13247126 13247126 C T NACC1 Missense_Mutation p.L343F 0.27 deleterious(0) benign(0.076) TCGA-D3-A2JG-06 19 23927190 23927190 G A ZNF681 Missense_Mutation p.H388Y 0.33 deleterious(0.01) benign(0.371) TCGA-D3-A2JG-06 19 44223374 44223374 C T IRGC Missense_Mutation p.R222C 0.46 tolerated(0.05) benign(0.016) TCGA-D3-A2JG-06 19 5455465 5455465 C T ZNRF4 5'UTR 0.48 TCGA-D3-A2JG-06 19 56895120 56895120 G A ZNF582 3'UTR 0.35 TCGA-D3-A2JG-06 19 7083402 7083402 C T ZNF557 Missense_Mutation p.H314Y 0.34 deleterious(0) possibly_damaging(0.556) TCGA-D3-A2JG-06 1 155160286 155160286 G T MUC1 Silent p.T331T 0.85 TCGA-D3-A2JG-06 1 160340839 160340839 C T NHLH1 Silent p.P106P 0.48 TCGA-D3-A2JG-06 1 174200433 174200433 C T RABGAP1L Missense_Mutation p.S161F 0.74 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A2JG-06 1 207644140 207644140 C T CR2 Silent p.V427V 0.78 TCGA-D3-A2JG-06 1 233136157 233136157 G A PCNXL2 Missense_Mutation p.S1741F 0.69 deleterious(0) probably_damaging(0.945) TCGA-D3-A2JG-06 1 245927428 245927428 G A SMYD3 Missense_Mutation p.P367L 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 1 248637452 248637452 G A OR2T3 Silent p.P267P 0.42 TCGA-D3-A2JG-06 1 37267467 37267467 G A GRIK3 Silent p.A915A 0.77 TCGA-D3-A2JG-06 1 47746773 47746773 G A STIL Missense_Mutation p.P453S 0.41 tolerated(0.33) benign(0.015) TCGA-D3-A2JG-06 1 86959145 86959145 G T CLCA1 Missense_Mutation p.D515Y 0.86 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A2JG-06 20 3578567 3578567 G A ATRN Missense_Mutation p.D1162N 0.39 deleterious(0.01) possibly_damaging(0.844) TCGA-D3-A2JG-06 21 39212975 39212975 G A KCNJ6 Silent p.L4L 0.37 TCGA-D3-A2JG-06 22 21331325 21331325 A T AIFM3 Missense_Mutation p.K408M 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JG-06 22 30886142 30886142 C T SEC14L4 Silent p.E391E 0.34 TCGA-D3-A2JG-06 2 101598697 101598697 C T NPAS2 Missense_Mutation p.S496L 0.44 deleterious(0.02) benign(0.372) TCGA-D3-A2JG-06 2 131356273 131356273 C T CFC1 Silent p.G63G 0.17 TCGA-D3-A2JG-06 2 152670746 152670746 C G ARL5A Missense_Mutation p.M64I 0.05 tolerated(0.07) possibly_damaging(0.564) TCGA-D3-A2JG-06 2 166231233 166231233 C T SCN2A Silent p.I1337I 0.29 TCGA-D3-A2JG-06 2 179632581 179632581 T C TTN Missense_Mutation p.K3126E 0.37 TCGA-D3-A2JG-06 2 179641847 179641847 G A TTN Intron 0.34 TCGA-D3-A2JG-06 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.39 TCGA-D3-A2JG-06 2 191894583 191894583 G A STAT4 Missense_Mutation p.P744S 0.29 tolerated_low_confidence(0.07) benign(0.015) TCGA-D3-A2JG-06 2 219694899 219694899 C T PRKAG3 Nonsense_Mutation p.W145* 0.39 TCGA-D3-A2JG-06 2 228882591 228882591 C T SPHKAP Silent p.R993R 0.34 TCGA-D3-A2JG-06 2 233194675 233194675 C T DIS3L2 Missense_Mutation p.P631L 0.44 tolerated(0.13) benign(0.102) TCGA-D3-A2JG-06 2 233194676 233194676 C T DIS3L2 Silent p.P631P 0.44 TCGA-D3-A2JG-06 2 234749971 234749971 C T HJURP Silent p.L485L 0.35 TCGA-D3-A2JG-06 2 97363400 97363400 G A FER1L5 RNA 0.43 TCGA-D3-A2JG-06 2 97363401 97363401 A C FER1L5 RNA 0.42 TCGA-D3-A2JG-06 3 150659495 150659495 G A CLRN1 Missense_Mutation p.L103F 0.64 tolerated(0.25) benign(0.065) TCGA-D3-A2JG-06 3 184573590 184573593 TTGT - VPS8 Frame_Shift_Del p.V377Ifs*5 0.54 TCGA-D3-A2JG-06 3 186390628 186390628 C T HRG Missense_Mutation p.P204L 0.59 deleterious(0.01) benign(0) TCGA-D3-A2JG-06 3 189526072 189526072 G A TP63 Silent p.T112T 0.62 TCGA-D3-A2JG-06 3 192980846 192980846 G A HRASLS Missense_Mutation p.G181E 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JG-06 3 38645368 38645368 C T SCN5A Silent p.Q575Q 0.32 TCGA-D3-A2JG-06 3 52551984 52551984 G A STAB1 Missense_Mutation p.G1576R 0.52 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JG-06 4 134072765 134072765 G A PCDH10 Silent p.R490R 0.35 TCGA-D3-A2JG-06 4 184210777 184210777 G A WWC2 Missense_Mutation p.A1125T 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A2JG-06 4 25835070 25835070 C T SEL1L3 Missense_Mutation p.G328S 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JG-06 4 55946090 55946090 G A KDR 3'UTR 0.47 TCGA-D3-A2JG-06 4 71275483 71275483 C T PROL1 Silent p.I146I 0.29 TCGA-D3-A2JG-06 5 127666379 127666379 C T FBN2 Missense_Mutation p.E1411K 0.38 deleterious(0) possibly_damaging(0.881) TCGA-D3-A2JG-06 5 13716799 13716799 C T DNAH5 Missense_Mutation p.G4236S 0.57 probably_damaging(0.959) TCGA-D3-A2JG-06 5 176759165 176759165 G A LMAN2 Silent p.L331L 0.51 TCGA-D3-A2JG-06 5 176951979 176951979 G A FAM193B Silent p.G501G 0.35 TCGA-D3-A2JG-06 5 35793345 35793345 C T SPEF2 Missense_Mutation p.P1547S 0.33 deleterious(0) possibly_damaging(0.772) TCGA-D3-A2JG-06 5 71016376 71016376 G A CARTPT Silent p.R95R 0.19 TCGA-D3-A2JG-06 6 121625979 121625979 C T TBC1D32 Missense_Mutation p.D231N 0.33 deleterious(0) probably_damaging(0.913) TCGA-D3-A2JG-06 6 129609164 129609164 G A LAMA2 Missense_Mutation p.G904R 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 6 154544362 154544362 C T IPCEF1 Missense_Mutation p.G88R 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JG-06 6 155469378 155469378 G A TIAM2 Silent p.K646K 0.44 TCGA-D3-A2JG-06 6 159262893 159262893 G A OSTCP1 RNA 0.33 TCGA-D3-A2JG-06 6 169637839 169637839 G A THBS2 Missense_Mutation p.S394F 0.41 deleterious(0) probably_damaging(0.934) TCGA-D3-A2JG-06 6 29342103 29342103 C T OR12D3 3'UTR 0.45 TCGA-D3-A2JG-06 6 36995237 36995237 G A FGD2 Silent p.L546L 0.38 TCGA-D3-A2JG-06 6 43270055 43270055 C T SLC22A7 Silent p.V393V 0.44 TCGA-D3-A2JG-06 6 70894614 70894614 G A COL19A1 Missense_Mutation p.G932E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 6 88173915 88173915 G A C6ORF165 Missense_Mutation p.E606K 0.45 tolerated(1) benign(0) TCGA-D3-A2JG-06 6 90642327 90642327 G A BACH2 Missense_Mutation p.P776S 0.41 tolerated(0.77) benign(0.008) TCGA-D3-A2JG-06 7 102952955 102952955 G A DNAJC2 3'Flank 0.40 TCGA-D3-A2JG-06 7 107738881 107738881 C T LAMB4 Missense_Mutation p.G443R 0.35 tolerated(0.06) possibly_damaging(0.595) TCGA-D3-A2JG-06 7 123594215 123594215 G A SPAM1 Silent p.K197K 0.26 TCGA-D3-A2JG-06 7 128615931 128615931 A C TNPO3 Missense_Mutation p.L707R 0.42 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JG-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JG-06 7 141773958 141773958 G A MGAM Intron 0.32 TCGA-D3-A2JG-06 7 142021110 142021110 G A TRBV5-1 Silent p.L30L 0.60 TCGA-D3-A2JG-06 7 142881273 142881273 G A TAS2R39 Missense_Mutation p.M254I 0.23 tolerated(0.08) benign(0.192) TCGA-D3-A2JG-06 7 143047514 143047514 C T CLCN1 Missense_Mutation p.S818F 0.56 deleterious(0.02) benign(0.002) TCGA-D3-A2JG-06 7 143793006 143793006 G A OR2A12 Missense_Mutation p.R269Q 0.30 tolerated(1) benign(0.001) TCGA-D3-A2JG-06 7 150033944 150033944 C T LRRC61 5'UTR 0.54 TCGA-D3-A2JG-06 7 31682949 31682949 C G CCDC129 Missense_Mutation p.D681E 0.51 tolerated(0.07) benign(0.394) TCGA-D3-A2JG-06 7 83032082 83032082 G A SEMA3E Nonsense_Mutation p.R337* 0.45 TCGA-D3-A2JG-06 8 131859680 131859680 G A ADCY8 Missense_Mutation p.S831F 0.33 tolerated(0.81) benign(0.002) TCGA-D3-A2JG-06 8 20004873 20004873 C T SLC18A1 Missense_Mutation p.A454T 0.57 tolerated(0.32) benign(0.279) TCGA-D3-A2JG-06 9 111976086 111976086 C T EPB41L4B Missense_Mutation p.G549E 0.82 tolerated(0.13) probably_damaging(0.962) TCGA-D3-A2JG-06 9 112778263 112778263 G A PALM2-AKAP2 Missense_Mutation p.E176K 0.51 tolerated_low_confidence(0.74) benign(0.006) TCGA-D3-A2JG-06 9 35811380 35811380 C T SPAG8 Silent p.V221V 0.73 TCGA-D3-A2JG-06 9 96418822 96418822 C T PHF2 Silent p.P364P 0.81 TCGA-D3-A2JG-06 9 99408252 99408252 C T AAED1 Nonsense_Mutation p.W159* 0.39 TCGA-D3-A2JG-06 X 102339391 102339391 T C NXF3 Missense_Mutation p.K77R 0.30 tolerated(1) benign(0) TCGA-D3-A2JG-06 X 109247307 109247307 C A TMEM164 Missense_Mutation p.T102N 0.54 deleterious(0.01) possibly_damaging(0.698) TCGA-D3-A2JG-06 X 129370208 129370208 G A ZNF280C Missense_Mutation p.P251S 0.22 deleterious(0.05) possibly_damaging(0.792) TCGA-D3-A2JG-06 X 153043654 153043654 G A PLXNB3 Intron 0.08 TCGA-D3-A2JG-06 X 153284759 153284759 G A IRAK1 Missense_Mutation p.P109S 0.31 tolerated(0.57) benign(0.071) TCGA-D3-A2JG-06 X 34962607 34962607 C T FAM47B Silent p.F553F 0.60 TCGA-D3-A2JG-06 X 5811505 5811505 C T NLGN4X Missense_Mutation p.E602K 0.35 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A2JG-06 X 73423469 73423469 A C RP3-368A4.5 RNA 0.36 TCGA-D3-A2JG-06 X 73423472 73423472 C T RP3-368A4.5 RNA 0.36 TCGA-D3-A2JG-06 X 73963454 73963454 C T KIAA2022 Missense_Mutation p.R313Q 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A2JG-06 Y 16952495 16952495 G A NLGN4Y Missense_Mutation p.E602K 0.77 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A2JH-06 10 102249894 102249894 C T SEC31B Missense_Mutation p.G946S 0.22 tolerated(0.42) benign(0.021) TCGA-D3-A2JH-06 10 106214254 106214254 G A CCDC147 Missense_Mutation p.G862E 0.19 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JH-06 10 108357136 108357136 G A SORCS1 Missense_Mutation p.L1080F 0.20 tolerated(0.16) benign(0.056) TCGA-D3-A2JH-06 10 114925412 114925412 C T TCF7L2 Missense_Mutation p.P497L 0.13 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JH-06 10 115536956 115536956 G A PLEKHS1 Missense_Mutation p.D369N 0.11 deleterious(0.02) possibly_damaging(0.806) TCGA-D3-A2JH-06 10 123263433 123263433 G A FGFR2 Missense_Mutation p.S438F 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-D3-A2JH-06 10 123847380 123847380 G A TACC2 Missense_Mutation p.D1789N 0.29 benign(0.017) TCGA-D3-A2JH-06 10 124345794 124345794 G A DMBT1 Missense_Mutation p.D560N 0.20 tolerated(0.4) unknown(0) TCGA-D3-A2JH-06 10 124459184 124459184 C T C10orf120 Silent p.Q41Q 0.12 TCGA-D3-A2JH-06 10 28023391 28023391 G A MKX Missense_Mutation p.R278C 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A2JH-06 10 28378716 28378716 G A MPP7 Missense_Mutation p.S336F 0.23 tolerated(0.06) benign(0.006) TCGA-D3-A2JH-06 10 28420551 28420551 C T MPP7 Missense_Mutation p.D129N 0.13 tolerated(0.32) benign(0.023) TCGA-D3-A2JH-06 10 32800564 32800564 C T CCDC7 Intron 0.14 TCGA-D3-A2JH-06 10 37451751 37451751 G A ANKRD30A Silent p.L603L 0.14 TCGA-D3-A2JH-06 10 3821774 3821774 G A KLF6 Missense_Mutation p.S270F 0.13 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JH-06 10 47087212 47087212 C T NPY4R Silent p.I143I 0.08 TCGA-D3-A2JH-06 10 48387899 48387899 G A RBP3 Silent p.S993S 0.11 TCGA-D3-A2JH-06 10 50740647 50740647 G A ERCC6-PGBD3 Missense_Mutation p.R122C 0.09 tolerated_low_confidence(0.14) benign(0.083) TCGA-D3-A2JH-06 10 50740648 50740648 G T ERCC6-PGBD3 Missense_Mutation p.S121R 0.09 tolerated_low_confidence(0.06) benign(0.361) TCGA-D3-A2JH-06 10 55570341 55570341 G A PCDH15 Missense_Mutation p.A1493V 0.15 benign(0.071) TCGA-D3-A2JH-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.11 TCGA-D3-A2JH-06 10 70706449 70706449 C T DDX50 3'UTR 0.14 TCGA-D3-A2JH-06 10 71654450 71654450 G A COL13A1 Missense_Mutation p.G208E 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 10 73121807 73121807 C T SLC29A3 Silent p.F290F 0.13 TCGA-D3-A2JH-06 10 75535399 75535399 T C FUT11 Missense_Mutation p.W479R 0.11 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JH-06 10 79566601 79566601 G A DLG5 Nonsense_Mutation p.Q1628* 0.15 TCGA-D3-A2JH-06 10 81373970 81373970 G A SFTPA1 3'Flank 0.26 TCGA-D3-A2JH-06 10 88818905 88818905 A C GLUD1 Splice_Site p.X468_splice 0.16 TCGA-D3-A2JH-06 10 95399917 95399917 G A PDE6C Missense_Mutation p.G525R 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JH-06 10 96454787 96454787 G A CYP2C18 Missense_Mutation p.E199K 0.18 tolerated(0.62) benign(0.008) TCGA-D3-A2JH-06 10 96612490 96612490 G A CYP2C19 Missense_Mutation p.G431E 0.11 deleterious(0) possibly_damaging(0.901) TCGA-D3-A2JH-06 10 96998373 96998373 C T PDLIM1 Missense_Mutation p.G252E 0.22 deleterious(0) possibly_damaging(0.601) TCGA-D3-A2JH-06 11 101773424 101773424 G A ANGPTL5 Silent p.T156T 0.15 TCGA-D3-A2JH-06 11 102710958 102710958 G A MMP3 Silent p.T272T 0.12 TCGA-D3-A2JH-06 11 105880737 105880737 G A MSANTD4 Missense_Mutation p.T188I 0.14 tolerated(0.23) benign(0.058) TCGA-D3-A2JH-06 11 113669902 113669902 G A USP28 3'UTR 0.18 TCGA-D3-A2JH-06 11 114182868 114182868 C T NNMT Missense_Mutation p.P155L 0.15 deleterious(0.04) possibly_damaging(0.903) TCGA-D3-A2JH-06 11 1159336 1159336 G A MUC5AC Missense_Mutation p.G438E 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 11 116729133 116729133 G A SIK3 Silent p.I910I 0.15 TCGA-D3-A2JH-06 11 117988781 117988781 C T TMPRSS4 3'UTR 0.50 TCGA-D3-A2JH-06 11 118516461 118516461 G A PHLDB1 Missense_Mutation p.G1142D 0.08 deleterious(0) probably_damaging(0.96) TCGA-D3-A2JH-06 11 118889399 118889399 G A TRAPPC4 5'UTR 0.22 TCGA-D3-A2JH-06 11 120989022 120989022 C T TECTA Silent p.F266F 0.10 TCGA-D3-A2JH-06 11 121491883 121491883 G A SORL1 Silent p.G2000G 0.11 TCGA-D3-A2JH-06 11 12315279 12315279 G A MICALCL Missense_Mutation p.D101N 0.11 tolerated(0.24) benign(0.009) TCGA-D3-A2JH-06 11 124179850 124179850 C T OR8D1 Silent p.E271E 0.26 TCGA-D3-A2JH-06 11 124310895 124310895 G A OR8B8 Silent p.F29F 0.10 TCGA-D3-A2JH-06 11 130278772 130278772 C T ADAMTS8 Missense_Mutation p.G605E 0.13 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JH-06 11 130288957 130288957 G A ADAMTS8 Silent p.L317L 0.10 TCGA-D3-A2JH-06 11 130289092 130289092 G A ADAMTS8 Silent p.I272I 0.16 TCGA-D3-A2JH-06 11 133790896 133790904 CAGGGCGGC - IGSF9B In_Frame_Del p.A906_L908del 0.09 TCGA-D3-A2JH-06 11 1629663 1629663 G A KRTAP5-3 5'UTR 0.12 TCGA-D3-A2JH-06 11 18528434 18528434 G A TSG101 Missense_Mutation p.P173L 0.12 deleterious(0.04) benign(0.12) TCGA-D3-A2JH-06 11 1858224 1858224 G A SYT8 Silent p.R290R 0.16 TCGA-D3-A2JH-06 11 22391717 22391717 G A SLC17A6 Missense_Mutation p.G342R 0.09 deleterious(0.02) benign(0.271) TCGA-D3-A2JH-06 11 4661752 4661752 G A OR51D1 Silent p.R244R 0.17 TCGA-D3-A2JH-06 11 47360879 47360879 T G MYBPC3 Missense_Mutation p.K715T 0.09 tolerated(0.26) benign(0.228) TCGA-D3-A2JH-06 11 4790962 4790962 A T OR51F1 Nonsense_Mutation p.Y62* 0.21 TCGA-D3-A2JH-06 11 49208318 49208318 C T FOLH1 Missense_Mutation p.D173N 0.14 deleterious(0.04) benign(0.099) TCGA-D3-A2JH-06 11 4976683 4976683 G A OR51A2 Silent p.F87F 0.20 TCGA-D3-A2JH-06 11 5221247 5221247 G A OR51V1 Silent p.I228I 0.14 TCGA-D3-A2JH-06 11 5322336 5322336 G A OR51B4 Missense_Mutation p.P281S 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 11 55135906 55135906 C T OR4A15 Missense_Mutation p.H183Y 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-D3-A2JH-06 11 55419207 55419207 C T OR4S2 Silent p.I276I 0.10 TCGA-D3-A2JH-06 11 55563262 55563262 C T OR5D14 Silent p.S77S 0.19 TCGA-D3-A2JH-06 11 55798785 55798785 G A OR5AS1 Silent p.V297V 0.12 TCGA-D3-A2JH-06 11 56020261 56020261 C T OR5T3 Silent p.L196L 0.14 TCGA-D3-A2JH-06 11 56344634 56344634 G A OR5M10 Silent p.A188A 0.20 TCGA-D3-A2JH-06 11 56380268 56380268 G A OR5M1 Silent p.A237A 0.09 TCGA-D3-A2JH-06 11 5664746 5664746 C T TRIM34 Missense_Mutation p.S425F 0.14 tolerated(0.45) benign(0.06) TCGA-D3-A2JH-06 11 5664747 5664747 C T TRIM34 Silent p.S425S 0.13 TCGA-D3-A2JH-06 11 57077190 57077190 C A TNKS1BP1 Nonsense_Mutation p.E999* 0.19 TCGA-D3-A2JH-06 11 57135556 57135556 G A P2RX3 Missense_Mutation p.D306N 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A2JH-06 11 57144328 57144328 A T PRG3 Missense_Mutation p.F225I 0.11 tolerated(0.1) benign(0.432) TCGA-D3-A2JH-06 11 57995973 57995973 G A OR10Q1 Silent p.D125D 0.11 TCGA-D3-A2JH-06 11 58207275 58207275 G A OR5B12 Missense_Mutation p.A117V 0.21 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D3-A2JH-06 11 60059804 60059804 C T MS4A4A Silent p.L50L 0.17 TCGA-D3-A2JH-06 11 60971580 60971580 G A PGA3 Missense_Mutation p.V20I 0.22 tolerated(0.74) benign(0.031) TCGA-D3-A2JH-06 11 61079489 61079489 G A DDB1 Missense_Mutation p.R713C 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 11 61646236 61646236 G A FADS3 Silent p.F202F 0.24 TCGA-D3-A2JH-06 11 62365529 62365529 A G MTA2 Missense_Mutation p.Y153H 0.16 deleterious(0.01) possibly_damaging(0.883) TCGA-D3-A2JH-06 11 63233675 63233675 C T HRASLS5 Silent p.K218K 0.14 TCGA-D3-A2JH-06 11 63283158 63283158 C T LGALS12 Silent p.F280F 0.12 TCGA-D3-A2JH-06 11 64109548 64109548 C T CCDC88B Missense_Mutation p.S253L 0.22 tolerated(0.11) possibly_damaging(0.623) TCGA-D3-A2JH-06 11 64418075 64418075 G A NRXN2 Missense_Mutation p.P985L 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 11 65373447 65373447 G A MAP3K11 Missense_Mutation p.S570F 0.13 deleterious(0) benign(0.261) TCGA-D3-A2JH-06 11 65649961 65649961 A G CTSW Missense_Mutation p.I168V 0.10 tolerated(0.07) benign(0.26) TCGA-D3-A2JH-06 11 67264878 67264878 G A PITPNM1 Missense_Mutation p.S657F 0.11 tolerated(0.06) benign(0.005) TCGA-D3-A2JH-06 11 67560735 67560735 G A FAM86C2P RNA 0.17 TCGA-D3-A2JH-06 11 6898467 6898467 G A OR10A4 Missense_Mutation p.E197K 0.13 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JH-06 11 70348958 70348958 G A SHANK2 Missense_Mutation p.L715F 0.14 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A2JH-06 11 7091610 7091610 G A NLRP14 Silent p.Q1023Q 0.16 TCGA-D3-A2JH-06 11 7981217 7981217 C T NLRP10 Missense_Mutation p.E648K 0.17 tolerated(0.23) benign(0.011) TCGA-D3-A2JH-06 11 9225822 9225822 G A DENND5A Missense_Mutation p.P112S 0.13 tolerated(1) benign(0.001) TCGA-D3-A2JH-06 11 93754685 93754685 A G HEPHL1 Missense_Mutation p.K51E 0.14 tolerated(0.19) benign(0.002) TCGA-D3-A2JH-06 11 93826788 93826788 G A HEPHL1 Missense_Mutation p.E806K 0.18 tolerated(0.24) benign(0.003) TCGA-D3-A2JH-06 12 100041875 100041875 G A FAM71C 5'UTR 0.22 TCGA-D3-A2JH-06 12 101703550 101703550 C T UTP20 Missense_Mutation p.R722C 0.11 deleterious(0) probably_damaging(0.97) TCGA-D3-A2JH-06 12 101755810 101755810 T C UTP20 Missense_Mutation p.L1921S 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 12 104069737 104069737 G A STAB2 Missense_Mutation p.G862R 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 12 107372306 107372306 G A MTERFD3 Missense_Mutation p.R63C 0.13 deleterious(0.02) benign(0.204) TCGA-D3-A2JH-06 12 109629452 109629452 C T ACACB Nonsense_Mutation p.R727* 0.12 TCGA-D3-A2JH-06 12 109967761 109967761 C T UBE3B Silent p.A898A 0.12 TCGA-D3-A2JH-06 12 117271707 117271707 C T RNFT2 Silent p.F331F 0.17 TCGA-D3-A2JH-06 12 119554778 119554778 G A SRRM4 Silent p.K134K 0.11 TCGA-D3-A2JH-06 12 123477212 123477212 G A PITPNM2 Silent p.F746F 0.11 TCGA-D3-A2JH-06 12 125441678 125441678 T A DHX37 Missense_Mutation p.I721F 0.10 deleterious(0) possibly_damaging(0.536) TCGA-D3-A2JH-06 12 129383812 129383812 G A GLT1D1 Missense_Mutation p.E119K 0.14 tolerated(0.21) possibly_damaging(0.486) TCGA-D3-A2JH-06 12 131616322 131616322 C T GPR133 Missense_Mutation p.A743V 0.10 deleterious(0.03) possibly_damaging(0.597) TCGA-D3-A2JH-06 12 13715747 13715747 C T GRIN2B Silent p.E1475E 0.10 TCGA-D3-A2JH-06 12 13715974 13715974 C T GRIN2B Missense_Mutation p.G1400S 0.10 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JH-06 12 13716383 13716383 C T GRIN2B Silent p.L1263L 0.17 TCGA-D3-A2JH-06 12 13717007 13717007 C G GRIN2B Missense_Mutation p.L1055F 0.13 tolerated(0.68) possibly_damaging(0.821) TCGA-D3-A2JH-06 12 1748967 1748967 C T WNT5B Missense_Mutation p.P149L 0.17 deleterious(0.03) probably_damaging(1) TCGA-D3-A2JH-06 12 2224601 2224601 G A CACNA1C Silent p.G87G 0.17 TCGA-D3-A2JH-06 12 29460616 29460616 G A FAR2 Missense_Mutation p.E191K 0.11 tolerated(0.21) possibly_damaging(0.864) TCGA-D3-A2JH-06 12 29630484 29630484 C T OVCH1 Missense_Mutation p.G366E 0.13 tolerated(1) benign(0.001) TCGA-D3-A2JH-06 12 4479873 4479873 T G FGF23 Missense_Mutation p.Q131P 0.10 deleterious(0.04) benign(0.006) TCGA-D3-A2JH-06 12 4479895 4479895 A G FGF23 Missense_Mutation p.Y124H 0.09 tolerated(0.07) possibly_damaging(0.893) TCGA-D3-A2JH-06 12 4829910 4829910 C T GALNT8 Missense_Mutation p.L23F 0.18 tolerated_low_confidence(0.05) benign(0.441) TCGA-D3-A2JH-06 12 52374763 52374763 C T ACVR1B Silent p.L197L 0.09 TCGA-D3-A2JH-06 12 52760942 52760942 C T KRT85 Missense_Mutation p.R83H 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JH-06 12 52778976 52778976 G A KRT84 Missense_Mutation p.P132S 0.17 deleterious(0.05) benign(0.021) TCGA-D3-A2JH-06 12 52862870 52862870 G A KRT6C Silent p.S557S 0.13 TCGA-D3-A2JH-06 12 53189324 53189324 C T KRT3 Missense_Mutation p.G168E 0.28 deleterious(0.01) unknown(0) TCGA-D3-A2JH-06 12 53232878 53232878 G A KRT78 3'UTR 0.14 TCGA-D3-A2JH-06 12 53343178 53343178 T C KRT18 Missense_Mutation p.M74T 0.11 tolerated(0.22) benign(0.185) TCGA-D3-A2JH-06 12 53413733 53413733 G A EIF4B Missense_Mutation p.E134K 0.15 tolerated(0.12) unknown(0) TCGA-D3-A2JH-06 12 55615172 55615172 C T OR10A7 Missense_Mutation p.R122C 0.14 deleterious(0.03) possibly_damaging(0.564) TCGA-D3-A2JH-06 12 55846720 55846720 C T OR6C2 Silent p.S241S 0.10 TCGA-D3-A2JH-06 12 55886277 55886277 G A OR6C68 Missense_Mutation p.G39E 0.13 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-D3-A2JH-06 12 56733728 56733728 C T IL23A Missense_Mutation p.P137L 0.11 deleterious(0.03) benign(0.404) TCGA-D3-A2JH-06 12 57111344 57111344 G A NACA Intron 0.20 TCGA-D3-A2JH-06 12 58024844 58024844 G A B4GALNT1 Missense_Mutation p.L137F 0.18 deleterious(0.04) benign(0.424) TCGA-D3-A2JH-06 12 58110498 58110498 C T OS9 Missense_Mutation p.A339V 0.11 tolerated(0.12) benign(0.008) TCGA-D3-A2JH-06 12 71148382 71148382 G A PTPRR Intron 0.12 TCGA-D3-A2JH-06 12 81741331 81741331 C T PPFIA2 Missense_Mutation p.R738Q 0.16 deleterious(0.03) possibly_damaging(0.611) TCGA-D3-A2JH-06 12 81762578 81762578 C T PPFIA2 Missense_Mutation p.D470N 0.17 deleterious(0) probably_damaging(0.978) TCGA-D3-A2JH-06 12 8276533 8276533 G A CLEC4A Missense_Mutation p.G20D 0.15 tolerated(0.27) benign(0.289) TCGA-D3-A2JH-06 12 91348321 91348321 G A CCER1 Missense_Mutation p.P67S 0.13 deleterious(0.02) probably_damaging(0.932) TCGA-D3-A2JH-06 13 101763545 101763545 G A NALCN Missense_Mutation p.S742L 0.17 tolerated(0.32) benign(0.028) TCGA-D3-A2JH-06 13 103698539 103698539 C T SLC10A2 Missense_Mutation p.E331K 0.14 tolerated(0.48) benign(0.001) TCGA-D3-A2JH-06 13 103718278 103718278 C T SLC10A2 Missense_Mutation p.G108R 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 13 19748170 19748170 C T TUBA3C Missense_Mutation p.D396N 0.11 deleterious_low_confidence(0.01) benign(0.014) TCGA-D3-A2JH-06 13 19751676 19751676 G A TUBA3C Silent p.F149F 0.13 TCGA-D3-A2JH-06 13 20067628 20067628 C T TPTE2 Missense_Mutation p.E9K 0.11 deleterious_low_confidence(0.01) benign(0.028) TCGA-D3-A2JH-06 13 28578145 28578145 A C FLT3 3'UTR 0.09 TCGA-D3-A2JH-06 13 29600504 29600504 G A MTUS2 Missense_Mutation p.D567N 0.12 tolerated(0.06) benign(0.013) TCGA-D3-A2JH-06 13 36401880 36401880 G A DCLK1 Silent p.I433I 0.16 TCGA-D3-A2JH-06 13 36888536 36888536 A G SPG20 Silent p.G437G 0.11 TCGA-D3-A2JH-06 13 39263138 39263138 T C FREM2 Silent p.L553L 0.16 TCGA-D3-A2JH-06 13 46946262 46946262 G A KIAA0226L Missense_Mutation p.P117S 0.10 tolerated(0.32) benign(0.001) TCGA-D3-A2JH-06 13 58207500 58207500 C G PCDH17 Missense_Mutation p.P274A 0.16 tolerated(0.16) benign(0.012) TCGA-D3-A2JH-06 13 72131213 72131213 C T DACH1 Missense_Mutation p.G507R 0.12 probably_damaging(0.982) TCGA-D3-A2JH-06 13 96237103 96237103 C T DZIP1 Missense_Mutation p.G804E 0.18 tolerated(0.52) benign(0.007) TCGA-D3-A2JH-06 13 99907258 99907258 G A GPR18 Missense_Mutation p.S290L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 14 100182517 100182517 C T CYP46A1 Silent p.F296F 0.12 TCGA-D3-A2JH-06 14 102898283 102898283 C T TECPR2 Missense_Mutation p.S412L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JH-06 14 103406000 103406000 C T CDC42BPB Missense_Mutation p.V1592M 0.17 deleterious(0) possibly_damaging(0.849) TCGA-D3-A2JH-06 14 104482409 104482409 C T TDRD9 Missense_Mutation p.P772L 0.28 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A2JH-06 14 105408642 105408642 C T AHNAK2 Silent p.P4382P 0.19 TCGA-D3-A2JH-06 14 106967211 106967211 C T IGHV1-46 Silent p.G63G 0.14 TCGA-D3-A2JH-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.11 deleterious(0.01) benign(0.048) TCGA-D3-A2JH-06 14 21836515 21836515 A G SUPT16H Silent p.L290L 0.10 TCGA-D3-A2JH-06 14 21836516 21836516 A T SUPT16H Silent p.T289T 0.10 TCGA-D3-A2JH-06 14 22616402 22616402 C T TRAV27 Missense_Mutation p.S48F 0.46 tolerated(0.12) benign(0.154) TCGA-D3-A2JH-06 14 23828855 23828855 C T EFS Missense_Mutation p.D278N 0.11 tolerated(0.15) possibly_damaging(0.735) TCGA-D3-A2JH-06 14 23828856 23828856 C T EFS Silent p.Q277Q 0.11 TCGA-D3-A2JH-06 14 24529202 24529202 C T LRRC16B Missense_Mutation p.S631F 0.12 deleterious(0) possibly_damaging(0.862) TCGA-D3-A2JH-06 14 24529203 24529203 C T LRRC16B Silent p.S631S 0.12 TCGA-D3-A2JH-06 14 33015010 33015010 C T AKAP6 Missense_Mutation p.P384L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 14 38060467 38060467 A C FOXA1 3'UTR 0.18 TCGA-D3-A2JH-06 14 60194250 60194250 G A RTN1 Silent p.P384P 0.22 TCGA-D3-A2JH-06 14 63175027 63175027 C T KCNH5 Silent p.Q722Q 0.11 TCGA-D3-A2JH-06 14 70633880 70633880 C T SLC8A3 Silent p.R420R 0.09 TCGA-D3-A2JH-06 14 78174243 78174243 G T ALKBH1 Silent p.P35P 0.11 TCGA-D3-A2JH-06 14 79175877 79175877 C T NRXN3 Silent p.L140L 0.11 TCGA-D3-A2JH-06 14 80669068 80669068 G A DIO2 Silent p.F298F 0.20 TCGA-D3-A2JH-06 14 91925011 91925011 G A SMEK1 3'UTR 0.22 TCGA-D3-A2JH-06 14 92249508 92249508 C T TC2N Nonsense_Mutation p.W470* 0.08 TCGA-D3-A2JH-06 14 92958550 92958550 C T SLC24A4 Missense_Mutation p.S561F 0.13 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JH-06 14 96761443 96761443 C T ATG2B Silent p.K1760K 0.12 TCGA-D3-A2JH-06 15 20658892 20658892 G A HERC2P3 RNA 0.23 TCGA-D3-A2JH-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.08 tolerated(0.3) benign(0.009) TCGA-D3-A2JH-06 15 24922007 24922007 G A NPAP1 Silent p.S331S 0.22 TCGA-D3-A2JH-06 15 24922217 24922217 C T NPAP1 Silent p.F401F 0.27 TCGA-D3-A2JH-06 15 24922815 24922815 C T NPAP1 Missense_Mutation p.P601S 0.16 tolerated(0.18) probably_damaging(0.996) TCGA-D3-A2JH-06 15 30665205 30665205 G A CHRFAM7A Missense_Mutation p.P102S 0.26 tolerated(0.27) benign(0.028) TCGA-D3-A2JH-06 15 30665206 30665206 G A CHRFAM7A Silent p.I101I 0.29 TCGA-D3-A2JH-06 15 34395929 34395929 C T PGBD4 Silent p.F399F 0.13 TCGA-D3-A2JH-06 15 35045113 35045113 G A GJD2 Missense_Mutation p.P178S 0.17 tolerated(0.23) benign(0.004) TCGA-D3-A2JH-06 15 42363464 42363464 C T PLA2G4D Nonsense_Mutation p.W578* 0.20 TCGA-D3-A2JH-06 15 52970227 52970227 C T FAM214A 5'UTR 0.09 TCGA-D3-A2JH-06 15 66223205 66223205 C T MEGF11 Missense_Mutation p.G455D 0.15 tolerated(0.72) benign(0.02) TCGA-D3-A2JH-06 15 66786865 66786865 G A SNAPC5 Missense_Mutation p.A69V 0.13 tolerated_low_confidence(0.15) benign(0.143) TCGA-D3-A2JH-06 15 74887989 74887989 C T ARID3B Silent p.I519I 0.12 TCGA-D3-A2JH-06 15 78825602 78825602 A C HYKK Missense_Mutation p.K238Q 0.17 tolerated(0.38) benign(0.015) TCGA-D3-A2JH-06 15 79059752 79059752 G A ADAMTS7 Missense_Mutation p.P943L 0.16 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JH-06 15 90344822 90344822 G A ANPEP Missense_Mutation p.S529F 0.12 tolerated(0.14) benign(0.243) TCGA-D3-A2JH-06 16 1306606 1306606 C T TPSD1 Missense_Mutation p.R58C 0.16 tolerated(0.17) benign(0.022) TCGA-D3-A2JH-06 16 1392257 1392257 C T BAIAP3 Silent p.F345F 0.23 TCGA-D3-A2JH-06 16 14029275 14029275 C T ERCC4 Nonsense_Mutation p.Q496* 0.18 TCGA-D3-A2JH-06 16 16278870 16278870 G C ABCC6 Missense_Mutation p.T630S 0.12 tolerated(0.47) benign(0) TCGA-D3-A2JH-06 16 21031009 21031009 C T DNAH3 Missense_Mutation p.D1987N 0.12 tolerated(0.66) benign(0) TCGA-D3-A2JH-06 16 21042418 21042418 C T DNAH3 Silent p.V1796V 0.11 TCGA-D3-A2JH-06 16 24166021 24166021 G A PRKCB Missense_Mutation p.R361Q 0.09 tolerated(0.16) benign(0.039) TCGA-D3-A2JH-06 16 24373082 24373082 C T CACNG3 Silent p.S282S 0.17 TCGA-D3-A2JH-06 16 25255315 25255315 G A ZKSCAN2 Missense_Mutation p.S591F 0.08 deleterious(0.01) possibly_damaging(0.534) TCGA-D3-A2JH-06 16 27786390 27786390 C T KIAA0556 Silent p.P1478P 0.09 TCGA-D3-A2JH-06 16 2815608 2815608 A C SRRM2 Silent p.S1693S 0.17 TCGA-D3-A2JH-06 16 28883220 28883220 C T SH2B1 Missense_Mutation p.P477S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JH-06 16 28990507 28990507 T A SPNS1 Missense_Mutation p.L159Q 0.13 deleterious(0) possibly_damaging(0.828) TCGA-D3-A2JH-06 16 29912570 29912570 G A ASPHD1 Nonsense_Mutation p.W93* 0.15 TCGA-D3-A2JH-06 16 29912571 29912571 G A ASPHD1 Nonsense_Mutation p.W93* 0.15 TCGA-D3-A2JH-06 16 30724011 30724011 C T SRCAP Missense_Mutation p.P669S 0.14 unknown(0) TCGA-D3-A2JH-06 16 30976345 30976345 C T SETD1A Missense_Mutation p.P428S 0.14 possibly_damaging(0.857) TCGA-D3-A2JH-06 16 30991855 30991855 C T SETD1A Silent p.P1486P 0.12 TCGA-D3-A2JH-06 16 3633495 3633495 G A SLX4 Silent p.L1586L 0.17 TCGA-D3-A2JH-06 16 49671260 49671260 G A ZNF423 Silent p.A601A 0.12 TCGA-D3-A2JH-06 16 49671261 49671261 G A ZNF423 Missense_Mutation p.A601V 0.11 tolerated(0.24) benign(0.039) TCGA-D3-A2JH-06 16 50102755 50102755 C T HEATR3 Missense_Mutation p.P126S 0.06 deleterious(0.04) possibly_damaging(0.8) TCGA-D3-A2JH-06 16 51175391 51175391 C T SALL1 Missense_Mutation p.E248K 0.14 deleterious(0) benign(0.043) TCGA-D3-A2JH-06 16 57493987 57493987 G A COQ9 Missense_Mutation p.V298M 0.12 deleterious(0.01) possibly_damaging(0.614) TCGA-D3-A2JH-06 16 57918086 57918086 C T CNGB1 Silent p.R1246R 0.13 TCGA-D3-A2JH-06 16 58320099 58320099 C T PRSS54 Silent p.R88R 0.11 TCGA-D3-A2JH-06 16 67208641 67208641 G A NOL3 Missense_Mutation p.A135T 0.19 deleterious_low_confidence(0.04) benign(0.026) TCGA-D3-A2JH-06 16 67916928 67916928 G A EDC4 Missense_Mutation p.E1233K 0.09 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JH-06 16 69143412 69143412 G A HAS3 Silent p.T38T 0.13 TCGA-D3-A2JH-06 16 70889126 70889126 G A HYDIN Silent p.F4116F 0.14 TCGA-D3-A2JH-06 16 74505106 74505106 C T GLG1 Missense_Mutation p.E732K 0.09 tolerated(0.17) benign(0.024) TCGA-D3-A2JH-06 16 815237 815237 G A MSLN Missense_Mutation p.G213E 0.26 deleterious(0) probably_damaging(0.953) TCGA-D3-A2JH-06 16 82032901 82032901 C T SDR42E1 Missense_Mutation p.E333K 0.10 deleterious(0) possibly_damaging(0.721) TCGA-D3-A2JH-06 16 84129350 84129350 G A MBTPS1 Missense_Mutation p.P161L 0.07 tolerated(0.51) benign(0.05) TCGA-D3-A2JH-06 16 9000299 9000299 G A USP7 Missense_Mutation p.P471L 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 16 9857657 9857657 G A GRIN2A Silent p.I1248I 0.09 TCGA-D3-A2JH-06 17 10299733 10299733 C T MYH8 Missense_Mutation p.G1523R 0.08 deleterious(0.01) possibly_damaging(0.795) TCGA-D3-A2JH-06 17 12016634 12016634 C T MAP2K4 Missense_Mutation p.S257F 0.12 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JH-06 17 1538791 1538791 G A SCARF1 Missense_Mutation p.A585V 0.16 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JH-06 17 16612200 16612200 G A CCDC144A Missense_Mutation p.E277K 0.10 tolerated(0.5) benign(0.014) TCGA-D3-A2JH-06 17 16703526 16703526 C T CCDC144A 3'UTR 0.10 TCGA-D3-A2JH-06 17 16852210 16852210 T G TNFRSF13B Missense_Mutation p.H96P 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 17 18389395 18389395 C T LGALS9C Silent p.F93F 0.28 TCGA-D3-A2JH-06 17 2570400 2570400 G C PAFAH1B1 Missense_Mutation p.A103P 0.12 deleterious(0.01) benign(0.254) TCGA-D3-A2JH-06 17 27022499 27022499 G A SUPT6H Missense_Mutation p.D1302N 0.24 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JH-06 17 3101608 3101608 A T OR1A2 Missense_Mutation p.S266C 0.08 deleterious(0) probably_damaging(0.971) TCGA-D3-A2JH-06 17 31439043 31439043 C T ASIC2 Missense_Mutation p.E251K 0.13 tolerated(0.9) possibly_damaging(0.636) TCGA-D3-A2JH-06 17 33680911 33680911 C T SLFN11 Missense_Mutation p.G456R 0.26 deleterious(0.04) benign(0.175) TCGA-D3-A2JH-06 17 34074923 34074923 C T GAS2L2 Nonsense_Mutation p.W259* 0.11 TCGA-D3-A2JH-06 17 34842473 34842473 G A ZNHIT3 5'Flank 0.15 TCGA-D3-A2JH-06 17 36104921 36104921 G A HNF1B 5'UTR 0.17 TCGA-D3-A2JH-06 17 38907296 38907296 G A KRT25 Silent p.V289V 0.11 TCGA-D3-A2JH-06 17 39673104 39673104 C T KRT15 Missense_Mutation p.G232S 0.13 tolerated(1) benign(0.015) TCGA-D3-A2JH-06 17 41008659 41008659 C T AOC3 3'UTR 0.27 TCGA-D3-A2JH-06 17 41223245 41223245 A G BRCA1 Silent p.P1583P 0.15 TCGA-D3-A2JH-06 17 42427699 42427699 C T GRN Silent p.P151P 0.19 TCGA-D3-A2JH-06 17 44060828 44060828 G A MAPT Missense_Mutation p.E220K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JH-06 17 45897645 45897645 G A OSBPL7 5'UTR 0.19 TCGA-D3-A2JH-06 17 46189403 46189403 C T SNX11 5'UTR 0.14 TCGA-D3-A2JH-06 17 4860302 4860302 T G ENO3 Missense_Mutation p.I422S 0.12 tolerated_low_confidence(0.69) benign(0.018) TCGA-D3-A2JH-06 17 4860303 4860303 C T ENO3 Silent p.I422I 0.12 TCGA-D3-A2JH-06 17 4876977 4876977 G C CAMTA2 Missense_Mutation p.R725G 0.15 tolerated(0.44) benign(0.002) TCGA-D3-A2JH-06 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.08 TCGA-D3-A2JH-06 17 61987860 61987860 G A CSHL1 Silent p.L76L 0.06 TCGA-D3-A2JH-06 17 67187420 67187420 G A ABCA10 Silent p.I636I 0.22 TCGA-D3-A2JH-06 17 73227516 73227516 C T NUP85 Silent p.L392L 0.12 TCGA-D3-A2JH-06 17 7329683 7329683 C T C17orf74 Missense_Mutation p.R125C 0.15 tolerated(0.19) benign(0.029) TCGA-D3-A2JH-06 17 7330090 7330090 C T C17orf74 Silent p.R260R 0.18 TCGA-D3-A2JH-06 17 73727378 73727378 C T ITGB4 Missense_Mutation p.R382W 0.11 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JH-06 17 74005574 74005574 G A EVPL Silent p.L1238L 0.11 TCGA-D3-A2JH-06 17 74005599 74005599 C T EVPL Silent p.K1229K 0.07 TCGA-D3-A2JH-06 17 75190973 75190973 C T SEC14L1 Missense_Mutation p.P230L 0.24 tolerated(0.27) benign(0.001) TCGA-D3-A2JH-06 17 76457746 76457746 G A DNAH17 Silent p.L3059L 0.12 TCGA-D3-A2JH-06 17 7696092 7696092 G A DNAH2 Silent p.G2421G 0.14 TCGA-D3-A2JH-06 17 79226002 79226002 G A SLC38A10 Silent p.S646S 0.19 TCGA-D3-A2JH-06 17 7950312 7950312 G A ALOX15B Missense_Mutation p.D459N 0.13 tolerated(0.09) benign(0.192) TCGA-D3-A2JH-06 17 79573813 79573813 G A NPLOC4 Silent p.I186I 0.16 TCGA-D3-A2JH-06 17 79954429 79954429 C T ASPSCR1 Missense_Mutation p.R214C 0.16 tolerated(0.24) unknown(0) TCGA-D3-A2JH-06 17 80059520 80059520 C T FASN 5'Flank 0.15 TCGA-D3-A2JH-06 17 8243413 8243413 G A ODF4 Missense_Mutation p.G15E 0.10 tolerated(0.08) benign(0.389) TCGA-D3-A2JH-06 17 900467 900467 C T TIMM22 Silent p.L29L 0.22 TCGA-D3-A2JH-06 18 13826627 13826627 C T MC5R Missense_Mutation p.S288F 0.07 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 18 21419774 21419774 G A LAMA3 Missense_Mutation p.E1073K 0.18 benign(0.078) TCGA-D3-A2JH-06 18 21533014 21533014 G A LAMA3 Missense_Mutation p.G3266E 0.17 possibly_damaging(0.8) TCGA-D3-A2JH-06 18 22804971 22804971 G A ZNF521 Missense_Mutation p.L971F 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A2JH-06 18 22804972 22804972 G A ZNF521 Silent p.S970S 0.20 TCGA-D3-A2JH-06 18 28588419 28588419 C T DSC3 Missense_Mutation p.D446N 0.11 tolerated(0.23) probably_damaging(0.938) TCGA-D3-A2JH-06 18 29795045 29795045 A G MEP1B Missense_Mutation p.D527G 0.11 tolerated(0.29) benign(0.001) TCGA-D3-A2JH-06 18 29867077 29867077 G A GAREM Missense_Mutation p.P495S 0.17 tolerated(0.29) benign(0.258) TCGA-D3-A2JH-06 18 30873194 30873194 C T CCDC178 Missense_Mutation p.E369K 0.22 deleterious(0.05) possibly_damaging(0.603) TCGA-D3-A2JH-06 18 334970 334970 C T COLEC12 Missense_Mutation p.G530S 0.18 deleterious(0) unknown(0) TCGA-D3-A2JH-06 18 43216985 43216985 C T SLC14A2 Silent p.I227I 0.13 TCGA-D3-A2JH-06 18 44560333 44560333 C T TCEB3B Missense_Mutation p.E435K 0.16 tolerated(0.25) probably_damaging(0.95) TCGA-D3-A2JH-06 18 45566752 45566752 C T ZBTB7C Missense_Mutation p.D243N 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A2JH-06 18 48327812 48327812 C T MRO Silent p.G178G 0.13 TCGA-D3-A2JH-06 18 52546599 52546599 G A RAB27B Splice_Site p.X52_splice 0.13 TCGA-D3-A2JH-06 18 55992272 55992272 C T NEDD4L Silent p.H186H 0.14 TCGA-D3-A2JH-06 18 55992273 55992273 C T NEDD4L Nonsense_Mutation p.Q187* 0.14 TCGA-D3-A2JH-06 18 5891769 5891769 G A TMEM200C Silent p.V98V 0.17 TCGA-D3-A2JH-06 18 61231222 61231222 G A SERPINB12 Missense_Mutation p.E172K 0.15 tolerated(0.07) benign(0.34) TCGA-D3-A2JH-06 18 72180828 72180828 C T CNDP2 Silent p.I259I 0.16 TCGA-D3-A2JH-06 18 77067158 77067158 A G ATP9B Missense_Mutation p.E566G 0.12 tolerated(0.54) benign(0) TCGA-D3-A2JH-06 18 9886764 9886764 C A TXNDC2 Silent p.T96T 0.17 TCGA-D3-A2JH-06 19 12575985 12575985 G A ZNF709 Missense_Mutation p.P251S 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JH-06 19 14262155 14262155 C T LPHN1 Missense_Mutation p.E1319K 0.19 tolerated(0.18) benign(0.095) TCGA-D3-A2JH-06 19 15918098 15918098 G A OR10H1 Silent p.V250V 0.11 TCGA-D3-A2JH-06 19 16797160 16797160 C T TMEM38A Missense_Mutation p.P206S 0.10 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JH-06 19 17951087 17951087 G A JAK3 Silent p.R402R 0.11 TCGA-D3-A2JH-06 19 18084953 18084953 C T KCNN1 Missense_Mutation p.P86S 0.15 tolerated(0.52) benign(0) TCGA-D3-A2JH-06 19 1881333 1881333 T C ABHD17A Missense_Mutation p.Y78C 0.13 deleterious(0) benign(0.115) TCGA-D3-A2JH-06 19 19655927 19655927 G A CILP2 Missense_Mutation p.G858D 0.15 deleterious(0) probably_damaging(0.921) TCGA-D3-A2JH-06 19 22155111 22155111 C T ZNF208 Missense_Mutation p.V909I 0.24 tolerated(0.24) unknown(0) TCGA-D3-A2JH-06 19 30935657 30935657 C T ZNF536 Silent p.L396L 0.24 TCGA-D3-A2JH-06 19 30935759 30935759 C T ZNF536 Silent p.Y430Y 0.17 TCGA-D3-A2JH-06 19 32844579 32844579 T G ZNF507 Missense_Mutation p.F281L 0.13 deleterious(0) possibly_damaging(0.827) TCGA-D3-A2JH-06 19 34981317 34981317 C T WTIP Missense_Mutation p.A235V 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A2JH-06 19 362188 362188 G A THEG 3'UTR 0.14 TCGA-D3-A2JH-06 19 36221442 36221442 C T KMT2B Missense_Mutation p.S1734F 0.12 probably_damaging(0.99) TCGA-D3-A2JH-06 19 38948139 38948139 C T RYR1 Silent p.V598V 0.19 TCGA-D3-A2JH-06 19 39191312 39191312 C T ACTN4 Nonsense_Mutation p.R79* 0.16 TCGA-D3-A2JH-06 19 39421417 39421417 C T SARS2 5'Flank 0.12 TCGA-D3-A2JH-06 19 39589716 39589716 C T PAPL Missense_Mutation p.P147S 0.12 tolerated(0.08) benign(0.392) TCGA-D3-A2JH-06 19 39963571 39963571 T A SUPT5H Splice_Site p.X719_splice 0.12 TCGA-D3-A2JH-06 19 40366477 40366477 C T FCGBP Missense_Mutation p.G4586E 0.18 probably_damaging(0.943) TCGA-D3-A2JH-06 19 40424155 40424155 G A FCGBP Missense_Mutation p.P683L 0.13 probably_damaging(0.996) TCGA-D3-A2JH-06 19 40521505 40521505 C T ZNF546 Silent p.P776P 0.11 TCGA-D3-A2JH-06 19 41224032 41224032 T A ITPKC Missense_Mutation p.I331N 0.10 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A2JH-06 19 42213745 42213745 G A CEA Missense_Mutation p.E71K 0.16 tolerated(0.2) possibly_damaging(0.514) TCGA-D3-A2JH-06 19 42752971 42752971 C T ERF Silent p.S431S 0.12 TCGA-D3-A2JH-06 19 4298302 4298302 G A TMIGD2 Silent p.P29P 0.19 TCGA-D3-A2JH-06 19 43259363 43259363 C T PSG8 Silent p.K255K 0.11 TCGA-D3-A2JH-06 19 43349212 43349212 C T PSG10P RNA 0.16 TCGA-D3-A2JH-06 19 43585170 43585170 C T PSG2 Missense_Mutation p.R98Q 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A2JH-06 19 43762547 43762547 G A PSG9 Silent p.L350L 0.12 TCGA-D3-A2JH-06 19 44223413 44223413 G A IRGC Missense_Mutation p.D235N 0.27 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JH-06 19 44791801 44791801 T G ZNF235 Missense_Mutation p.E596A 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 19 49564608 49564608 C T NTF4 3'UTR 0.14 TCGA-D3-A2JH-06 19 50655827 50655827 A G IZUMO2 3'UTR 0.14 TCGA-D3-A2JH-06 19 51504413 51504413 G A KLK8 Missense_Mutation p.P4L 0.11 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-D3-A2JH-06 19 52272457 52272457 C T FPR2 Silent p.S182S 0.10 TCGA-D3-A2JH-06 19 5239014 5239014 C T PTPRS Missense_Mutation p.E589K 0.17 tolerated(0.83) benign(0.353) TCGA-D3-A2JH-06 19 52447895 52447895 C T ZNF613 Silent p.N253N 0.11 TCGA-D3-A2JH-06 19 5246048 5246048 C T PTPRS Missense_Mutation p.V243M 0.29 deleterious(0.01) benign(0.047) TCGA-D3-A2JH-06 19 52538078 52538078 C T ZNF432 Missense_Mutation p.G285E 0.08 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JH-06 19 53302908 53302908 C T ZNF28 3'UTR 0.08 TCGA-D3-A2JH-06 19 54598454 54598454 T C OSCAR 3'UTR 0.13 TCGA-D3-A2JH-06 19 56413492 56413492 G A NLRP13 Silent p.L900L 0.09 TCGA-D3-A2JH-06 19 56952796 56952796 C T ZNF667 Missense_Mutation p.G523E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 19 58806168 58806168 C T ZNF8 Missense_Mutation p.R332W 0.11 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JH-06 19 5931539 5931539 G A RANBP3 Missense_Mutation p.P190L 0.16 tolerated(0.21) benign(0.039) TCGA-D3-A2JH-06 19 7573206 7573206 C T C19orf45 Missense_Mutation p.P470S 0.12 tolerated(0.44) benign(0.005) TCGA-D3-A2JH-06 19 843590 843590 G A PRTN3 Missense_Mutation p.S64N 0.18 tolerated(0.81) benign(0.004) TCGA-D3-A2JH-06 19 8808355 8808355 C T ACTL9 Missense_Mutation p.A233T 0.10 tolerated(0.32) possibly_damaging(0.57) TCGA-D3-A2JH-06 19 8921958 8921958 C T ZNF558 Silent p.%3D 0.12 TCGA-D3-A2JH-06 19 9047175 9047175 C T MUC16 Missense_Mutation p.E11486K 0.11 benign(0.007) TCGA-D3-A2JH-06 19 9061857 9061857 C T MUC16 Missense_Mutation p.G8530E 0.11 unknown(0) TCGA-D3-A2JH-06 19 9204418 9204418 C T OR1M1 Silent p.L166L 0.16 TCGA-D3-A2JH-06 19 9577806 9577806 C T ZNF560 Missense_Mutation p.G606E 0.15 tolerated(0.09) probably_damaging(0.986) TCGA-D3-A2JH-06 1 110256339 110256339 G A GSTM5 Missense_Mutation p.D106N 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A2JH-06 1 111060492 111060492 G A KCNA10 Silent p.I306I 0.16 TCGA-D3-A2JH-06 1 111667496 111667496 A G DRAM2 Silent p.A69A 0.20 TCGA-D3-A2JH-06 1 1119444 1119444 C T TTLL10 Silent p.S411S 0.10 TCGA-D3-A2JH-06 1 112329723 112329723 C T KCND3 Missense_Mutation p.G371E 0.08 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JH-06 1 112524544 112524544 G A KCND3 Missense_Mutation p.P269S 0.16 deleterious(0) possibly_damaging(0.876) TCGA-D3-A2JH-06 1 11307752 11307752 G A MTOR Silent p.N385N 0.16 TCGA-D3-A2JH-06 1 11307753 11307753 T A MTOR Missense_Mutation p.N385I 0.16 deleterious(0.03) possibly_damaging(0.758) TCGA-D3-A2JH-06 1 114380623 114380623 C T PTPN22 Missense_Mutation p.E467K 0.08 tolerated(0.08) benign(0.012) TCGA-D3-A2JH-06 1 114964156 114964156 G C TRIM33 Missense_Mutation p.R655G 0.18 tolerated(0.09) benign(0.145) TCGA-D3-A2JH-06 1 115399263 115399263 G A SYCP1 Missense_Mutation p.E60K 0.12 tolerated(0.12) benign(0.094) TCGA-D3-A2JH-06 1 117690362 117690362 G A VTCN1 Missense_Mutation p.S256L 0.17 tolerated(0.16) benign(0.017) TCGA-D3-A2JH-06 1 120050235 120050235 G A HSD3B1 Missense_Mutation p.E46K 0.15 tolerated(0.18) benign(0.071) TCGA-D3-A2JH-06 1 120056460 120056460 C T HSD3B1 Missense_Mutation p.T105I 0.12 deleterious(0) probably_damaging(0.981) TCGA-D3-A2JH-06 1 1275673 1275673 G A DVL1 Silent p.T241T 0.13 TCGA-D3-A2JH-06 1 12806373 12806373 C T C1orf158 5'UTR 0.13 TCGA-D3-A2JH-06 1 12837259 12837259 G A PRAMEF12 Silent p.E323E 0.18 TCGA-D3-A2JH-06 1 12921089 12921089 C T PRAMEF2 Missense_Mutation p.P294S 0.13 tolerated(0.13) benign(0.046) TCGA-D3-A2JH-06 1 12921158 12921158 C T PRAMEF2 Missense_Mutation p.P317S 0.12 deleterious(0.02) benign(0.22) TCGA-D3-A2JH-06 1 12980108 12980108 G A PRAMEF7 Missense_Mutation p.A434T 0.25 benign(0.076) TCGA-D3-A2JH-06 1 146400211 146400211 C T NBPF12 Silent p.I229I 0.36 TCGA-D3-A2JH-06 1 147230993 147230993 C G GJA5 Silent p.R118R 0.22 TCGA-D3-A2JH-06 1 149895472 149895472 G A SF3B4 Missense_Mutation p.P413S 0.23 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JH-06 1 151991192 151991192 G A NBPF18P RNA 0.10 TCGA-D3-A2JH-06 1 152283934 152283934 C T FLG Missense_Mutation p.G1143E 0.16 probably_damaging(0.931) TCGA-D3-A2JH-06 1 152777644 152777644 C T LCE1C Missense_Mutation p.S104N 0.14 tolerated_low_confidence(0.65) unknown(0) TCGA-D3-A2JH-06 1 154033425 154033425 T G NUP210L Missense_Mutation p.D914A 0.10 tolerated(0.15) benign(0.016) TCGA-D3-A2JH-06 1 155324386 155324386 C T ASH1L Missense_Mutation p.R2364Q 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D3-A2JH-06 1 155837946 155837946 C T SYT11 Silent p.I75I 0.20 TCGA-D3-A2JH-06 1 156438006 156438006 G A MEF2D Missense_Mutation p.P445S 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 1 156703213 156703213 G T RRNAD1 Silent p.V179V 0.13 TCGA-D3-A2JH-06 1 158262541 158262541 C T CD1C Missense_Mutation p.P256S 0.10 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JH-06 1 158369106 158369106 G A OR10T2 Missense_Mutation p.R51C 0.16 tolerated(0.3) benign(0.002) TCGA-D3-A2JH-06 1 158607893 158607893 C T SPTA1 Missense_Mutation p.E1707K 0.14 tolerated(0.68) benign(0.06) TCGA-D3-A2JH-06 1 158686961 158686961 A C OR6K3 Silent p.G315G 0.14 TCGA-D3-A2JH-06 1 159842795 159842795 C T CCDC19 Missense_Mutation p.E506K 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A2JH-06 1 160460440 160460440 G A SLAMF6 Silent p.L228L 0.12 TCGA-D3-A2JH-06 1 161681928 161681928 C A FCRLA Missense_Mutation p.S258Y 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JH-06 1 161681929 161681929 C T FCRLA Silent p.S258S 0.16 TCGA-D3-A2JH-06 1 16199550 16199550 G A SPEN Missense_Mutation p.R108K 0.10 probably_damaging(0.977) TCGA-D3-A2JH-06 1 164761910 164761910 G A PBX1 Missense_Mutation p.D149N 0.18 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JH-06 1 167095846 167095846 G A DUSP27 Missense_Mutation p.R493Q 0.10 tolerated(0.67) benign(0.004) TCGA-D3-A2JH-06 1 169446914 169446914 G A SLC19A2 Missense_Mutation p.R96C 0.13 tolerated(0.07) possibly_damaging(0.512) TCGA-D3-A2JH-06 1 170633333 170633333 G A PRRX1 5'UTR 0.26 TCGA-D3-A2JH-06 1 172501635 172501635 C T SUCO 5'Flank 0.18 TCGA-D3-A2JH-06 1 17263330 17263330 G A CROCC Silent p.Q385Q 0.07 TCGA-D3-A2JH-06 1 173570932 173570932 C T SLC9C2 5'UTR 0.12 TCGA-D3-A2JH-06 1 175355337 175355337 C T TNR Silent p.L536L 0.23 TCGA-D3-A2JH-06 1 17606925 17606925 G A PADI3 Splice_Site p.X545_splice 0.13 TCGA-D3-A2JH-06 1 176661352 176661352 G A PAPPA2 Missense_Mutation p.R841K 0.19 tolerated(0.55) benign(0.014) TCGA-D3-A2JH-06 1 176661369 176661369 C A PAPPA2 Missense_Mutation p.P847T 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 1 176668661 176668661 G A PAPPA2 Missense_Mutation p.D1058N 0.11 tolerated(0.1) benign(0.167) TCGA-D3-A2JH-06 1 176833426 176833426 C T ASTN1 Silent p.E1293E 0.08 TCGA-D3-A2JH-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.18 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JH-06 1 181754883 181754883 C T CACNA1E Missense_Mutation p.S1905L 0.17 tolerated(0.31) benign(0.307) TCGA-D3-A2JH-06 1 183617323 183617323 G A APOBEC4 Silent p.L198L 0.10 TCGA-D3-A2JH-06 1 18554492 18554492 C T IGSF21 Silent p.I57I 0.12 TCGA-D3-A2JH-06 1 186276833 186276833 C T PRG4 Missense_Mutation p.P661L 0.21 unknown(0) TCGA-D3-A2JH-06 1 18808297 18808297 C T KLHDC7A Silent p.F274F 0.18 TCGA-D3-A2JH-06 1 19180721 19180721 C T TAS1R2 Missense_Mutation p.V415I 0.21 tolerated(0.19) possibly_damaging(0.654) TCGA-D3-A2JH-06 1 19216515 19216515 G A ALDH4A1 Silent p.A49A 0.17 TCGA-D3-A2JH-06 1 19216516 19216516 G A ALDH4A1 Missense_Mutation p.A49V 0.17 tolerated(0.2) benign(0.103) TCGA-D3-A2JH-06 1 19465712 19465712 G A UBR4 Missense_Mutation p.P2866S 0.15 benign(0.076) TCGA-D3-A2JH-06 1 196646616 196646616 T C CFH Silent p.C146C 0.18 TCGA-D3-A2JH-06 1 197396610 197396610 G A CRB1 Missense_Mutation p.D719N 0.14 tolerated(0.07) benign(0.02) TCGA-D3-A2JH-06 1 197396679 197396679 T C CRB1 Missense_Mutation p.F742L 0.11 deleterious(0.01) benign(0.079) TCGA-D3-A2JH-06 1 201934671 201934671 G A TIMM17A Missense_Mutation p.G144S 0.15 tolerated(0.79) benign(0.141) TCGA-D3-A2JH-06 1 201934672 201934672 G A TIMM17A Splice_Site p.X144_splice 0.16 TCGA-D3-A2JH-06 1 207222387 207222387 T C YOD1 Missense_Mutation p.H342R 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 1 209905834 209905834 G A HSD11B1 Missense_Mutation p.D191N 0.18 tolerated(0.23) benign(0.11) TCGA-D3-A2JH-06 1 21050929 21050929 G A SH2D5 Missense_Mutation p.S197F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 1 211526699 211526699 G A TRAF5 Missense_Mutation p.E40K 0.15 deleterious(0) possibly_damaging(0.706) TCGA-D3-A2JH-06 1 215963483 215963483 C T USH2A Missense_Mutation p.S3367N 0.17 benign(0.439) TCGA-D3-A2JH-06 1 22162078 22162078 C T HSPG2 Missense_Mutation p.G3470R 0.15 probably_damaging(0.985) TCGA-D3-A2JH-06 1 226183064 226183064 G A SDE2 Silent p.F47F 0.15 TCGA-D3-A2JH-06 1 228547307 228547307 C T OBSCN Intron 0.33 TCGA-D3-A2JH-06 1 228559615 228559615 G A OBSCN Missense_Mutation p.G8003S 0.19 possibly_damaging(0.654) TCGA-D3-A2JH-06 1 22987377 22987377 G A C1QB Missense_Mutation p.G87E 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 1 23191389 23191389 G A EPHB2 Silent p.Q329Q 0.19 TCGA-D3-A2JH-06 1 232629380 232629380 C T SIPA1L2 Missense_Mutation p.E504K 0.18 deleterious(0.01) possibly_damaging(0.665) TCGA-D3-A2JH-06 1 233313585 233313585 G A PCNXL2 Missense_Mutation p.A1079V 0.18 tolerated(0.53) benign(0.001) TCGA-D3-A2JH-06 1 237580356 237580356 C T RYR2 Missense_Mutation p.H261Y 0.14 possibly_damaging(0.867) TCGA-D3-A2JH-06 1 237780661 237780661 G A RYR2 Missense_Mutation p.D1931N 0.17 benign(0.032) TCGA-D3-A2JH-06 1 23885382 23885382 G A ID3 Intron 0.33 TCGA-D3-A2JH-06 1 240071876 240071876 C A CHRM3 Missense_Mutation p.S375R 0.21 tolerated(0.42) benign(0.225) TCGA-D3-A2JH-06 1 240370979 240370979 C T FMN2 Missense_Mutation p.P956L 0.15 unknown(0) TCGA-D3-A2JH-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.15 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JH-06 1 241753362 241753362 G A KMO Missense_Mutation p.E383K 0.09 deleterious(0) benign(0.13) TCGA-D3-A2JH-06 1 247013051 247013051 G A AHCTF1 Missense_Mutation p.A2095V 0.13 tolerated(0.07) benign(0.031) TCGA-D3-A2JH-06 1 247752184 247752184 C T OR2G2 Missense_Mutation p.R175C 0.15 tolerated(0.08) benign(0.082) TCGA-D3-A2JH-06 1 247876018 247876018 A G OR6F1 Silent p.L14L 0.12 TCGA-D3-A2JH-06 1 247902183 247902183 C T OR14K1 Silent p.S89S 0.17 TCGA-D3-A2JH-06 1 248551181 248551181 C T OR2T6 Missense_Mutation p.T91I 0.15 deleterious(0.05) benign(0.021) TCGA-D3-A2JH-06 1 248551644 248551644 G A OR2T6 Missense_Mutation p.M245I 0.13 tolerated(0.24) benign(0.03) TCGA-D3-A2JH-06 1 25167432 25167432 C T CLIC4 3'UTR 0.21 TCGA-D3-A2JH-06 1 26514779 26514779 C T CNKSR1 Silent p.A503A 0.20 TCGA-D3-A2JH-06 1 29041063 29041063 G A GMEB1 Missense_Mutation p.M500I 0.12 deleterious(0.02) benign(0.021) TCGA-D3-A2JH-06 1 32264050 32264050 C T SPOCD1 Missense_Mutation p.R674K 0.10 tolerated(0.41) possibly_damaging(0.627) TCGA-D3-A2JH-06 1 35579992 35579992 C T ZMYM1 Missense_Mutation p.S854F 0.11 deleterious(0) possibly_damaging(0.794) TCGA-D3-A2JH-06 1 43021893 43021893 A C CCDC30 Silent p.P164P 0.09 TCGA-D3-A2JH-06 1 43778085 43778085 C T TIE1 Silent p.F580F 0.14 TCGA-D3-A2JH-06 1 47746080 47746080 G A STIL Missense_Mutation p.P684S 0.15 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JH-06 1 57159464 57159464 G A PRKAA2 Missense_Mutation p.E168K 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A2JH-06 1 57411609 57411609 G A C8B Silent p.Y330Y 0.10 TCGA-D3-A2JH-06 1 62914219 62914219 G A USP1 Missense_Mutation p.D502N 0.12 tolerated(0.24) possibly_damaging(0.808) TCGA-D3-A2JH-06 1 6522219 6522219 G A TNFRSF25 Missense_Mutation p.P263S 0.10 tolerated(0.27) benign(0.098) TCGA-D3-A2JH-06 1 65349124 65349124 G A JAK1 Missense_Mutation p.A14V 0.14 tolerated(0.22) possibly_damaging(0.629) TCGA-D3-A2JH-06 1 71418638 71418638 C T PTGER3 Silent p.V403V 0.09 TCGA-D3-A2JH-06 1 75038499 75038499 C T C1orf173 Silent p.K965K 0.14 TCGA-D3-A2JH-06 1 7887212 7887212 C T PER3 Silent p.G733G 0.12 TCGA-D3-A2JH-06 1 85331090 85331090 C T LPAR3 Missense_Mutation p.M238I 0.15 tolerated(0.34) benign(0.065) TCGA-D3-A2JH-06 1 85595745 85595745 C T WDR63 Missense_Mutation p.R828C 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JH-06 1 86916403 86916403 T C CLCA2 Silent p.G714G 0.07 TCGA-D3-A2JH-06 20 13029697 13029697 C T SPTLC3 Silent p.T74T 0.28 TCGA-D3-A2JH-06 20 1546882 1546882 G A SIRPB1 Silent p.L372L 0.33 TCGA-D3-A2JH-06 20 1616836 1616836 C T SIRPG Missense_Mutation p.R249Q 0.14 tolerated(0.26) benign(0.102) TCGA-D3-A2JH-06 20 17474832 17474832 C T BFSP1 Missense_Mutation p.E629K 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 20 23065859 23065859 T A CD93 Missense_Mutation p.K324I 0.09 tolerated(0.08) benign(0.405) TCGA-D3-A2JH-06 20 24994654 24994654 G A ACSS1 Silent p.L465L 0.17 TCGA-D3-A2JH-06 20 31044018 31044018 G A C20orf112 Missense_Mutation p.P97L 0.12 tolerated(0.08) benign(0.093) TCGA-D3-A2JH-06 20 3211822 3211822 G A SLC4A11 Missense_Mutation p.P382S 0.22 deleterious(0.04) benign(0.312) TCGA-D3-A2JH-06 20 33999786 33999786 C T UQCC1 5'UTR 0.29 TCGA-D3-A2JH-06 20 35526320 35526320 G A SAMHD1 Nonsense_Mutation p.R551* 0.07 TCGA-D3-A2JH-06 20 40727098 40727098 G A PTPRT Missense_Mutation p.S1270F 0.11 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A2JH-06 20 42788512 42788512 C T JPH2 Silent p.V305V 0.12 TCGA-D3-A2JH-06 20 43561048 43561048 G A PABPC1L Nonsense_Mutation p.W435* 0.22 TCGA-D3-A2JH-06 20 44672273 44672273 G A SLC12A5 Silent p.G436G 0.13 TCGA-D3-A2JH-06 20 44681630 44681630 C T SLC12A5 Silent p.A827A 0.18 TCGA-D3-A2JH-06 20 45354695 45354695 C T SLC2A10 Silent p.G340G 0.13 TCGA-D3-A2JH-06 20 45354696 45354696 C T SLC2A10 Missense_Mutation p.L341F 0.13 tolerated(0.44) benign(0.004) TCGA-D3-A2JH-06 20 45702823 45702823 C A EYA2 Silent p.P170P 0.10 TCGA-D3-A2JH-06 20 45702824 45702824 C T EYA2 Nonsense_Mutation p.Q171* 0.10 TCGA-D3-A2JH-06 20 50133368 50133368 G A NFATC2 Silent p.S429S 0.12 TCGA-D3-A2JH-06 20 55204560 55204560 C T TFAP2C 5'UTR 0.13 TCGA-D3-A2JH-06 20 56136488 56136488 C T PCK1 Silent p.N7N 0.16 TCGA-D3-A2JH-06 20 60990901 60990901 G A RBBP8NL Missense_Mutation p.P163S 0.24 tolerated(0.56) benign(0.012) TCGA-D3-A2JH-06 20 61598115 61598115 C T SLC17A9 Intron 0.10 TCGA-D3-A2JH-06 20 61981702 61981702 C T CHRNA4 Missense_Mutation p.R354H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A2JH-06 20 62194861 62194861 G A HELZ2 Missense_Mutation p.P1772S 0.42 tolerated(0.36) benign(0.05) TCGA-D3-A2JH-06 20 62316916 62316916 C T RTEL1 Missense_Mutation p.S435F 0.24 tolerated(0.6) benign(0.012) TCGA-D3-A2JH-06 20 62316917 62316917 C T RTEL1 Silent p.S435S 0.23 TCGA-D3-A2JH-06 20 896765 896765 C T ANGPT4 Silent p.R31R 0.21 TCGA-D3-A2JH-06 20 9496746 9496746 C T LAMP5 Missense_Mutation p.R113C 0.15 deleterious(0.02) possibly_damaging(0.51) TCGA-D3-A2JH-06 21 19715909 19715909 C T TMPRSS15 Missense_Mutation p.E448K 0.16 tolerated(0.15) probably_damaging(0.93) TCGA-D3-A2JH-06 21 28327191 28327191 C T ADAMTS5 Splice_Site p.X369_splice 0.28 TCGA-D3-A2JH-06 21 38524315 38524315 A T TTC3 Missense_Mutation p.N800I 0.19 tolerated(0.36) benign(0.001) TCGA-D3-A2JH-06 21 41684099 41684099 G T DSCAM Silent p.S657S 0.25 TCGA-D3-A2JH-06 21 43342110 43342110 C T C2CD2 Missense_Mutation p.D155N 0.26 tolerated(0.27) benign(0.001) TCGA-D3-A2JH-06 22 18364025 18364025 G A MICAL3 Intron 0.13 TCGA-D3-A2JH-06 22 20128403 20128403 G A ZDHHC8 Silent p.V254V 0.17 TCGA-D3-A2JH-06 22 22868460 22868460 G A ZNF280A Nonsense_Mutation p.Q499* 0.10 TCGA-D3-A2JH-06 22 25331227 25331227 G A TMEM211 3'UTR 0.18 TCGA-D3-A2JH-06 22 29446055 29446055 C T ZNRF3 Missense_Mutation p.P629L 0.11 deleterious_low_confidence(0.02) benign(0.019) TCGA-D3-A2JH-06 22 40356158 40356158 G A GRAP2 Silent p.G90G 0.14 TCGA-D3-A2JH-06 22 42463188 42463188 G A NAGA Missense_Mutation p.T144I 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 22 45244822 45244822 G A ARHGAP8 Silent p.V375V 0.13 TCGA-D3-A2JH-06 22 46653538 46653538 G A PKDREJ Silent p.S1894S 0.11 TCGA-D3-A2JH-06 22 47189669 47189669 C T TBC1D22A Missense_Mutation p.P131S 0.21 tolerated(0.48) benign(0.002) TCGA-D3-A2JH-06 2 100903447 100903447 G A LONRF2 Missense_Mutation p.L667F 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 2 103335119 103335119 G A MFSD9 Silent p.I395I 0.14 TCGA-D3-A2JH-06 2 107040937 107040937 C T RGPD3 Silent p.Q1162Q 0.13 TCGA-D3-A2JH-06 2 108488799 108488799 C T RGPD4 Missense_Mutation p.R1447C 0.14 deleterious(0.01) possibly_damaging(0.601) TCGA-D3-A2JH-06 2 108917321 108917321 C T SULT1C2 Intron 0.15 TCGA-D3-A2JH-06 2 112541923 112541923 G A ANAPC1 Missense_Mutation p.P1658S 0.11 deleterious(0.01) benign(0.419) TCGA-D3-A2JH-06 2 114501363 114501363 A G SLC35F5 Silent p.P163P 0.15 TCGA-D3-A2JH-06 2 114501364 114501364 G A SLC35F5 Missense_Mutation p.P163L 0.15 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JH-06 2 119752160 119752160 G A MARCO 3'UTR 0.15 TCGA-D3-A2JH-06 2 128931494 128931494 C T UGGT1 Missense_Mutation p.T1145I 0.20 deleterious(0) probably_damaging(0.969) TCGA-D3-A2JH-06 2 130832798 130832798 C T POTEF Silent p.Q749Q 0.14 TCGA-D3-A2JH-06 2 130955934 130955934 G A TUBA3E 5'UTR 0.15 TCGA-D3-A2JH-06 2 133542791 133542791 C T NCKAP5 Silent p.K531K 0.13 TCGA-D3-A2JH-06 2 136566592 136566592 C T LCT Missense_Mutation p.D1109N 0.09 tolerated(0.13) benign(0.176) TCGA-D3-A2JH-06 2 141128281 141128281 C T LRP1B Missense_Mutation p.R3669K 0.15 benign(0.067) TCGA-D3-A2JH-06 2 141533714 141533714 G A LRP1B Missense_Mutation p.T1818I 0.20 possibly_damaging(0.507) TCGA-D3-A2JH-06 2 141986887 141986887 C T LRP1B Missense_Mutation p.D239N 0.14 possibly_damaging(0.539) TCGA-D3-A2JH-06 2 149227488 149227488 G A MBD5 Missense_Mutation p.R659K 0.14 deleterious(0) benign(0.14) TCGA-D3-A2JH-06 2 162273044 162273044 G A TBR1 Silent p.S41S 0.15 TCGA-D3-A2JH-06 2 166165685 166165685 G A SCN2A Missense_Mutation p.E206K 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A2JH-06 2 168100390 168100390 A T XIRP2 Nonsense_Mutation p.K830* 0.11 TCGA-D3-A2JH-06 2 171709222 171709222 A T GAD1 Splice_Site p.X395_splice 0.15 TCGA-D3-A2JH-06 2 171819405 171819405 C T GORASP2 Missense_Mutation p.P323S 0.16 tolerated(0.08) probably_damaging(0.968) TCGA-D3-A2JH-06 2 179536776 179536776 C T TTN Missense_Mutation p.E11717K 0.09 TCGA-D3-A2JH-06 2 184024281 184024281 C T NUP35 Silent p.I268I 0.13 TCGA-D3-A2JH-06 2 185800850 185800850 G A ZNF804A Missense_Mutation p.G243R 0.15 deleterious(0.02) benign(0.04) TCGA-D3-A2JH-06 2 196729521 196729521 G A DNAH7 Silent p.I2286I 0.14 TCGA-D3-A2JH-06 2 196759936 196759936 C T DNAH7 Missense_Mutation p.D1554N 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 2 196825163 196825163 C T DNAH7 Silent p.A904A 0.17 TCGA-D3-A2JH-06 2 202248842 202248842 A C TRAK2 Silent p.V687V 0.14 TCGA-D3-A2JH-06 2 202248843 202248843 A C TRAK2 Missense_Mutation p.V687G 0.14 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JH-06 2 206869496 206869496 G A INO80D Missense_Mutation p.P894S 0.12 tolerated_low_confidence(0.08) benign(0.089) TCGA-D3-A2JH-06 2 207620056 207620056 G A MDH1B Missense_Mutation p.S196F 0.15 deleterious(0) possibly_damaging(0.519) TCGA-D3-A2JH-06 2 211532934 211532934 C T CPS1 Missense_Mutation p.H1349Y 0.09 tolerated(1) benign(0.003) TCGA-D3-A2JH-06 2 21231540 21231540 G A APOB Missense_Mutation p.P2734S 0.12 probably_damaging(0.996) TCGA-D3-A2JH-06 2 212576792 212576792 T G ERBB4 Silent p.L369L 0.26 TCGA-D3-A2JH-06 2 215831615 215831615 G A ABCA12 Silent p.F1947F 0.10 TCGA-D3-A2JH-06 2 220047132 220047132 C T FAM134A Silent p.P471P 0.17 TCGA-D3-A2JH-06 2 227945167 227945167 C T COL4A4 Missense_Mutation p.G599R 0.16 probably_damaging(0.979) TCGA-D3-A2JH-06 2 228858297 228858297 C T SPHKAP Missense_Mutation p.M1558I 0.21 deleterious(0.04) benign(0.19) TCGA-D3-A2JH-06 2 232952409 232952409 C T DIS3L2 Silent p.L193L 0.12 TCGA-D3-A2JH-06 2 234894442 234894442 C T TRPM8 Missense_Mutation p.P958S 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A2JH-06 2 238274679 238274679 C T COL6A3 Splice_Site p.X1834_splice 0.10 TCGA-D3-A2JH-06 2 238976788 238976788 C T SCLY Silent p.F103F 0.18 TCGA-D3-A2JH-06 2 239009110 239009110 C T ESPNL Missense_Mutation p.T17M 0.19 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JH-06 2 242695211 242695211 C T D2HGDH Intron 0.14 TCGA-D3-A2JH-06 2 29296579 29296579 G A C2orf71 Silent p.A183A 0.15 TCGA-D3-A2JH-06 2 31562439 31562439 G A XDH Silent p.I1230I 0.08 TCGA-D3-A2JH-06 2 32476427 32476427 C T NLRC4 Missense_Mutation p.G169E 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 2 32832604 32832604 C T BIRC6 Missense_Mutation p.P4718L 0.11 probably_damaging(0.996) TCGA-D3-A2JH-06 2 36737131 36737131 G A CRIM1 Missense_Mutation p.E503K 0.22 tolerated(0.17) benign(0.03) TCGA-D3-A2JH-06 2 60688062 60688062 C T BCL11A Missense_Mutation p.G662D 0.13 deleterious(0) probably_damaging(0.931) TCGA-D3-A2JH-06 2 70188403 70188403 C T ASPRV1 Missense_Mutation p.E140K 0.18 tolerated(0.12) benign(0.344) TCGA-D3-A2JH-06 2 73717795 73717795 C T ALMS1 Silent p.H2902H 0.22 TCGA-D3-A2JH-06 2 90108975 90108975 G A IGKV6D-41 Silent p.S80S 0.12 TCGA-D3-A2JH-06 2 95513821 95513821 G A RNU6-1320P 5'Flank 0.09 TCGA-D3-A2JH-06 2 97017715 97017715 C T NCAPH Silent p.L289L 0.10 TCGA-D3-A2JH-06 2 98846622 98846622 T G VWA3B Missense_Mutation p.W754G 0.12 tolerated(0.44) benign(0.001) TCGA-D3-A2JH-06 3 101311653 101311653 C T PCNP 3'UTR 0.11 TCGA-D3-A2JH-06 3 102153882 102153882 C T ZPLD1 5'UTR 0.25 TCGA-D3-A2JH-06 3 107096457 107096457 G A CCDC54 Missense_Mutation p.R8K 0.13 tolerated(0.1) probably_damaging(0.994) TCGA-D3-A2JH-06 3 108406916 108406916 C T DZIP3 Silent p.S1081S 0.09 TCGA-D3-A2JH-06 3 111795743 111795743 G A TMPRSS7 Nonsense_Mutation p.W533* 0.15 TCGA-D3-A2JH-06 3 113890585 113890585 C G DRD3 Missense_Mutation p.W85C 0.12 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JH-06 3 113955853 113955853 G A ZNF80 Silent p.V23V 0.18 TCGA-D3-A2JH-06 3 118865782 118865782 C T C3orf30 Missense_Mutation p.P249L 0.12 tolerated(0.22) probably_damaging(0.991) TCGA-D3-A2JH-06 3 120976026 120976026 C T STXBP5L Nonsense_Mutation p.Q560* 0.09 TCGA-D3-A2JH-06 3 121981094 121981094 C T CASR Silent p.V404V 0.11 TCGA-D3-A2JH-06 3 122437232 122437232 C T PARP14 Missense_Mutation p.P1412S 0.15 tolerated(0.39) benign(0.013) TCGA-D3-A2JH-06 3 129252474 129252474 C T RHO Silent p.T320T 0.15 TCGA-D3-A2JH-06 3 130284112 130284112 C T COL6A6 Silent p.I312I 0.17 TCGA-D3-A2JH-06 3 133698444 133698444 C A SLCO2A1 Missense_Mutation p.G39C 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 3 141164020 141164020 G A ZBTB38 Silent p.Q930Q 0.11 TCGA-D3-A2JH-06 3 141499546 141499546 C T GRK7 Missense_Mutation p.R315W 0.20 deleterious(0.01) possibly_damaging(0.841) TCGA-D3-A2JH-06 3 142430824 142430824 G A PLS1 Missense_Mutation p.G622E 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JH-06 3 14744758 14744758 G T C3orf20 Missense_Mutation p.L289F 0.13 deleterious(0.01) possibly_damaging(0.853) TCGA-D3-A2JH-06 3 14964556 14964556 G C FGD5 Missense_Mutation p.V1271L 0.06 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JH-06 3 154032852 154032852 G A DHX36 Missense_Mutation p.R196W 0.19 deleterious(0.01) possibly_damaging(0.462) TCGA-D3-A2JH-06 3 155311961 155311961 G A PLCH1 Missense_Mutation p.S68F 0.11 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JH-06 3 155551305 155551305 G A SLC33A1 Silent p.F406F 0.19 TCGA-D3-A2JH-06 3 184294836 184294836 G A EPHB3 Missense_Mutation p.E407K 0.19 tolerated(0.14) benign(0.12) TCGA-D3-A2JH-06 3 185993421 185993421 G A DGKG Silent p.T275T 0.14 TCGA-D3-A2JH-06 3 191888273 191888273 G A FGF12 Missense_Mutation p.S196L 0.10 deleterious(0) possibly_damaging(0.642) TCGA-D3-A2JH-06 3 25833013 25833013 C T OXSM Nonsense_Mutation p.Q168* 0.11 TCGA-D3-A2JH-06 3 27427485 27427485 G A SLC4A7 Silent p.L1121L 0.13 TCGA-D3-A2JH-06 3 3081908 3081908 G A CNTN4 Missense_Mutation p.G784E 0.13 deleterious(0.01) benign(0) TCGA-D3-A2JH-06 3 38347827 38347827 C T SLC22A14 Silent p.L104L 0.10 TCGA-D3-A2JH-06 3 38738847 38738847 C T SCN10A Missense_Mutation p.G1955E 0.14 tolerated_low_confidence(0.07) benign(0.23) TCGA-D3-A2JH-06 3 38755522 38755522 G A SCN10A Missense_Mutation p.A1244V 0.12 deleterious(0) benign(0.063) TCGA-D3-A2JH-06 3 3886533 3886533 C T LRRN1 Missense_Mutation p.L70F 0.09 deleterious(0.01) possibly_damaging(0.533) TCGA-D3-A2JH-06 3 39230536 39230536 G A XIRP1 Missense_Mutation p.S134F 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-D3-A2JH-06 3 39438112 39438112 G A SLC25A38 3'UTR 0.12 TCGA-D3-A2JH-06 3 43753262 43753262 C T ABHD5 Nonsense_Mutation p.Q190* 0.17 TCGA-D3-A2JH-06 3 46009752 46009752 C T FYCO1 Silent p.L358L 0.19 TCGA-D3-A2JH-06 3 4808225 4808225 C T ITPR1 Silent p.F1837F 0.19 TCGA-D3-A2JH-06 3 52325015 52325015 C T GLYCTK Silent p.F139F 0.13 TCGA-D3-A2JH-06 3 54676166 54676166 G A CACNA2D3 Silent p.T355T 0.21 TCGA-D3-A2JH-06 3 54952855 54952855 C T LRTM1 Silent p.R223R 0.33 TCGA-D3-A2JH-06 3 55052277 55052277 C T CACNA2D3 Missense_Mutation p.P974S 0.18 tolerated(0.16) benign(0.231) TCGA-D3-A2JH-06 3 56779477 56779477 C T ARHGEF3 Missense_Mutation p.S241N 0.14 tolerated(1) benign(0.001) TCGA-D3-A2JH-06 3 65349223 65349223 G A MAGI1 Nonsense_Mutation p.R1138* 0.17 TCGA-D3-A2JH-06 3 67054066 67054066 G A KBTBD8 Silent p.Q225Q 0.13 TCGA-D3-A2JH-06 3 9146374 9146374 A C SRGAP3 Missense_Mutation p.L138R 0.12 deleterious(0) possibly_damaging(0.678) TCGA-D3-A2JH-06 3 97851905 97851905 C T OR5H1 Missense_Mutation p.R122C 0.09 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JH-06 4 104510988 104510988 C T TACR3 Missense_Mutation p.D417N 0.14 tolerated(0.06) benign(0.002) TCGA-D3-A2JH-06 4 106156493 106156493 C T TET2 Missense_Mutation p.P465L 0.15 tolerated(0.34) benign(0.006) TCGA-D3-A2JH-06 4 106157278 106157278 G A TET2 Missense_Mutation p.A727T 0.11 tolerated(0.11) benign(0.059) TCGA-D3-A2JH-06 4 114117612 114117612 C T ANK2 Missense_Mutation p.S92F 0.20 probably_damaging(0.999) TCGA-D3-A2JH-06 4 120107210 120107210 C T MYOZ2 Missense_Mutation p.P217L 0.13 deleterious(0) probably_damaging(0.981) TCGA-D3-A2JH-06 4 126240824 126240824 T G FAT4 Silent p.V1086V 0.12 TCGA-D3-A2JH-06 4 134072200 134072200 G A PCDH10 Missense_Mutation p.G302E 0.16 tolerated(0.16) benign(0.338) TCGA-D3-A2JH-06 4 138452785 138452785 C T PCDH18 Missense_Mutation p.G153E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 4 138452842 138452842 G A PCDH18 Missense_Mutation p.S134F 0.15 deleterious(0) possibly_damaging(0.555) TCGA-D3-A2JH-06 4 154217084 154217084 G A TRIM2 Missense_Mutation p.G469E 0.17 deleterious(0.04) benign(0.071) TCGA-D3-A2JH-06 4 155156463 155156463 G A DCHS2 Missense_Mutation p.P2659L 0.12 deleterious(0.03) benign(0.172) TCGA-D3-A2JH-06 4 155506702 155506702 G A FGA Missense_Mutation p.R627C 0.14 deleterious(0.05) benign(0.032) TCGA-D3-A2JH-06 4 159526268 159526268 G A RXFP1 Silent p.K147K 0.19 TCGA-D3-A2JH-06 4 166929121 166929121 G A TLL1 Missense_Mutation p.E280K 0.18 tolerated(0.17) benign(0.005) TCGA-D3-A2JH-06 4 167663152 167663152 G A SPOCK3 Silent p.L333L 0.08 TCGA-D3-A2JH-06 4 1742558 1742559 - T TACC3 Frame_Shift_Ins p.Q691Sfs*10 0.12 TCGA-D3-A2JH-06 4 175896537 175896537 C T ADAM29 5'UTR 0.33 TCGA-D3-A2JH-06 4 177605173 177605173 C T VEGFC Silent p.T389T 0.15 TCGA-D3-A2JH-06 4 183600827 183600827 C T TENM3 Silent p.F445F 0.12 TCGA-D3-A2JH-06 4 185697691 185697691 C T ACSL1 Missense_Mutation p.V235M 0.12 tolerated(0.1) benign(0.074) TCGA-D3-A2JH-06 4 189012615 189012615 G A TRIML2 Missense_Mutation p.S359F 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JH-06 4 25673303 25673303 G A SLC34A2 Nonsense_Mutation p.W336* 0.15 TCGA-D3-A2JH-06 4 40045554 40045554 G A RP11-333E13.4 RNA 0.27 TCGA-D3-A2JH-06 4 40356328 40356328 C T CHRNA9 Missense_Mutation p.P411S 0.12 tolerated(0.29) benign(0.004) TCGA-D3-A2JH-06 4 47574913 47574913 G A ATP10D Missense_Mutation p.V1089I 0.16 tolerated(1) benign(0.001) TCGA-D3-A2JH-06 4 57796699 57796699 C T REST Missense_Mutation p.P559S 0.14 tolerated(0.19) benign(0.11) TCGA-D3-A2JH-06 4 57796700 57796700 C T REST Missense_Mutation p.P559L 0.14 deleterious(0) possibly_damaging(0.642) TCGA-D3-A2JH-06 4 69512746 69512746 C T UGT2B15 3'UTR 0.12 TCGA-D3-A2JH-06 4 71509504 71509504 G A ENAM Nonsense_Mutation p.W787* 0.12 TCGA-D3-A2JH-06 4 71510108 71510108 G A ENAM Missense_Mutation p.D989N 0.22 tolerated(0.33) benign(0.315) TCGA-D3-A2JH-06 4 72412140 72412140 C T SLC4A4 Missense_Mutation p.P839L 0.23 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JH-06 4 73148985 73148985 T G ADAMTS3 Silent p.S1162S 0.14 TCGA-D3-A2JH-06 4 83582217 83582217 G A SCD5 Intron 0.13 TCGA-D3-A2JH-06 4 9784938 9784938 G A DRD5 Missense_Mutation p.E429K 0.09 tolerated(0.11) benign(0.118) TCGA-D3-A2JH-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.12 TCGA-D3-A2JH-06 5 10239295 10239295 G A FAM173B Nonsense_Mutation p.R64* 0.19 TCGA-D3-A2JH-06 5 112770048 112770048 C T TSSK1B Silent p.R163R 0.16 TCGA-D3-A2JH-06 5 122734918 122734918 C T CEP120 Missense_Mutation p.G175E 0.11 tolerated(1) benign(0.002) TCGA-D3-A2JH-06 5 127626458 127626458 C T FBN2 Silent p.G2137G 0.11 TCGA-D3-A2JH-06 5 131819600 131819600 G A IRF1 3'UTR 0.23 TCGA-D3-A2JH-06 5 134059307 134059307 C T SEC24A Silent p.F1038F 0.14 TCGA-D3-A2JH-06 5 13830199 13830199 G A DNAH5 Missense_Mutation p.S2062F 0.13 possibly_damaging(0.788) TCGA-D3-A2JH-06 5 13850769 13850769 G A DNAH5 Silent p.S1702S 0.12 TCGA-D3-A2JH-06 5 140032629 140032629 C T IK Missense_Mutation p.R102C 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 5 140203153 140203153 C T PCDHA5 Missense_Mutation p.P598L 0.12 tolerated_low_confidence(0.06) benign(0.013) TCGA-D3-A2JH-06 5 140214953 140214953 C T PCDHA7 Missense_Mutation p.P329S 0.10 tolerated_low_confidence(0.2) benign(0.088) TCGA-D3-A2JH-06 5 140215068 140215068 C T PCDHA7 Missense_Mutation p.T367I 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.757) TCGA-D3-A2JH-06 5 140221567 140221567 G A PCDHA8 Missense_Mutation p.E221K 0.16 deleterious_low_confidence(0.05) benign(0.064) TCGA-D3-A2JH-06 5 140248760 140248760 G T PCDHA11 Missense_Mutation p.W24C 0.17 deleterious_low_confidence(0.02) benign(0.151) TCGA-D3-A2JH-06 5 140248762 140248762 A T PCDHA11 Missense_Mutation p.E25V 0.15 tolerated_low_confidence(0.05) benign(0.146) TCGA-D3-A2JH-06 5 140250261 140250261 G A PCDHA11 Missense_Mutation p.E525K 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2JH-06 5 140516369 140516369 C T PCDHB5 Silent p.T451T 0.14 TCGA-D3-A2JH-06 5 140552966 140552966 G A PCDHB7 Missense_Mutation p.D184N 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A2JH-06 5 140626208 140626208 C G PCDHB15 Missense_Mutation p.S354R 0.19 deleterious_low_confidence(0.02) benign(0.038) TCGA-D3-A2JH-06 5 140626250 140626250 T C PCDHB15 Silent p.F368F 0.18 TCGA-D3-A2JH-06 5 140731844 140731844 G A PCDHGB1 Missense_Mutation p.D673N 0.14 tolerated(0.16) benign(0.382) TCGA-D3-A2JH-06 5 140741003 140741003 C T PCDHGB2 Missense_Mutation p.S434F 0.11 deleterious(0) possibly_damaging(0.696) TCGA-D3-A2JH-06 5 140754309 140754309 C T PCDHGA6 Missense_Mutation p.P220L 0.19 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-D3-A2JH-06 5 140794564 140794564 C T PCDHGA10 Silent p.L608L 0.20 TCGA-D3-A2JH-06 5 142689710 142689710 G A NR3C1 Missense_Mutation p.P475S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 5 145393608 145393608 C T SH3RF2 Missense_Mutation p.S348F 0.10 tolerated(0.7) benign(0.042) TCGA-D3-A2JH-06 5 147281223 147281223 C T C5orf46 Missense_Mutation p.E62K 0.10 deleterious(0.02) possibly_damaging(0.502) TCGA-D3-A2JH-06 5 151202191 151202191 C T GLRA1 3'UTR 0.18 TCGA-D3-A2JH-06 5 156770028 156770028 C T FNDC9 Missense_Mutation p.E173K 0.09 deleterious(0.04) benign(0.254) TCGA-D3-A2JH-06 5 161324445 161324445 C T GABRA1 3'UTR 0.13 TCGA-D3-A2JH-06 5 171766297 171766297 G A SH3PXD2B Silent p.A604A 0.13 TCGA-D3-A2JH-06 5 173491276 173491276 G C NSG2 Missense_Mutation p.K57N 0.09 tolerated(0.06) benign(0.414) TCGA-D3-A2JH-06 5 176519691 176519691 G A FGFR4 Silent p.R321R 0.18 TCGA-D3-A2JH-06 5 23527651 23527651 C T PRDM9 Silent p.H818H 0.08 TCGA-D3-A2JH-06 5 24511442 24511442 C T CDH10 Silent p.V332V 0.09 TCGA-D3-A2JH-06 5 33637760 33637760 G A ADAMTS12 Missense_Mutation p.R604W 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 5 33937426 33937426 G A RXFP3 Missense_Mutation p.R194Q 0.13 deleterious(0.04) benign(0.087) TCGA-D3-A2JH-06 5 36049213 36049213 G A UGT3A2 Silent p.F207F 0.11 TCGA-D3-A2JH-06 5 36049314 36049314 C T UGT3A2 Missense_Mutation p.E174K 0.10 tolerated(0.06) benign(0.21) TCGA-D3-A2JH-06 5 41058176 41058176 G A MROH2B Missense_Mutation p.H249Y 0.25 tolerated(0.55) benign(0.002) TCGA-D3-A2JH-06 5 43277242 43277242 G A NIM1K Missense_Mutation p.E126K 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 5 43280111 43280111 G A NIM1K Silent p.L197L 0.18 TCGA-D3-A2JH-06 5 45262291 45262291 G A HCN1 Missense_Mutation p.S802F 0.15 tolerated_low_confidence(0.7) benign(0.146) TCGA-D3-A2JH-06 5 66255112 66255112 C T MAST4 Intron 0.12 TCGA-D3-A2JH-06 5 76259231 76259231 G A CRHBP Missense_Mutation p.D253N 0.15 tolerated(0.07) possibly_damaging(0.684) TCGA-D3-A2JH-06 5 82815771 82815771 G A VCAN Missense_Mutation p.G549E 0.09 tolerated(0.55) benign(0.059) TCGA-D3-A2JH-06 5 89925145 89925145 G A GPR98 Missense_Mutation p.R543K 0.18 benign(0.364) TCGA-D3-A2JH-06 5 89938477 89938477 G A GPR98 Silent p.L755L 0.12 TCGA-D3-A2JH-06 5 90059138 90059138 C T GPR98 Missense_Mutation p.S4046F 0.25 probably_damaging(0.951) TCGA-D3-A2JH-06 6 100895167 100895167 G A SIM1 Silent p.I325I 0.10 TCGA-D3-A2JH-06 6 105474224 105474224 G A LIN28B Missense_Mutation p.E84K 0.16 tolerated(0.06) possibly_damaging(0.608) TCGA-D3-A2JH-06 6 110620292 110620292 G A METTL24 Missense_Mutation p.R207C 0.17 tolerated(0.29) benign(0.083) TCGA-D3-A2JH-06 6 114378925 114378925 C T HS3ST5 Silent p.L179L 0.06 TCGA-D3-A2JH-06 6 117086375 117086375 G A FAM162B Silent p.F72F 0.14 TCGA-D3-A2JH-06 6 129635944 129635944 G A LAMA2 Splice_Site p.X1185_splice 0.21 TCGA-D3-A2JH-06 6 130497140 130497140 C T SAMD3 Missense_Mutation p.R223Q 0.15 tolerated(0.11) probably_damaging(0.936) TCGA-D3-A2JH-06 6 168265333 168265333 G A MLLT4 Missense_Mutation p.D70N 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A2JH-06 6 26431762 26431762 T C BTN2A3P RNA 0.11 TCGA-D3-A2JH-06 6 27783082 27783082 C T HIST1H2BM Silent p.R87R 0.12 TCGA-D3-A2JH-06 6 27783084 27783084 C T HIST1H2BM Missense_Mutation p.S88L 0.16 deleterious_low_confidence(0.02) benign(0.153) TCGA-D3-A2JH-06 6 28297436 28297436 C T ZSCAN31 Missense_Mutation p.D9N 0.12 tolerated(0.27) benign(0) TCGA-D3-A2JH-06 6 29054291 29054291 C T OR2B3 Missense_Mutation p.M245I 0.14 deleterious(0.03) benign(0.016) TCGA-D3-A2JH-06 6 30888877 30888877 C T VARS2 Silent p.S535S 0.14 TCGA-D3-A2JH-06 6 32188182 32188182 C T NOTCH4 Missense_Mutation p.G387R 0.16 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JH-06 6 33967763 33967763 G A MIR1275 RNA 0.11 TCGA-D3-A2JH-06 6 37140845 37140845 C T PIM1 Silent p.S227S 0.24 TCGA-D3-A2JH-06 6 37358613 37358613 G A RNF8 3'UTR 0.15 TCGA-D3-A2JH-06 6 39159209 39159209 C T KCNK5 Silent p.G319G 0.11 TCGA-D3-A2JH-06 6 41889369 41889369 C T BYSL Silent p.I23I 0.17 TCGA-D3-A2JH-06 6 43323410 43323410 G A ZNF318 Silent p.P554P 0.15 TCGA-D3-A2JH-06 6 43323411 43323411 G A ZNF318 Missense_Mutation p.P554L 0.15 benign(0.025) TCGA-D3-A2JH-06 6 44081941 44081941 G A MRPL14 Missense_Mutation p.T26I 0.09 deleterious(0) benign(0.273) TCGA-D3-A2JH-06 6 44217790 44217790 C A HSP90AB1 Missense_Mutation p.L183I 0.14 deleterious(0.02) possibly_damaging(0.464) TCGA-D3-A2JH-06 6 47675989 47675989 G A GPR115 Silent p.G41G 0.15 TCGA-D3-A2JH-06 6 55925592 55925592 C T COL21A1 Missense_Mutation p.G785E 0.22 deleterious(0) probably_damaging(0.965) TCGA-D3-A2JH-06 6 57015571 57015571 T C ZNF451 Missense_Mutation p.I888T 0.05 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JH-06 6 7571748 7571748 T C DSP Missense_Mutation p.F612L 0.20 probably_damaging(0.977) TCGA-D3-A2JH-06 6 88768457 88768457 C T SPACA1 Missense_Mutation p.L131F 0.11 tolerated(0.08) benign(0.323) TCGA-D3-A2JH-06 6 88854232 88854232 G A CNR1 Silent p.G254G 0.09 TCGA-D3-A2JH-06 7 100685591 100685591 G A MUC17 Missense_Mutation p.E3632K 0.11 benign(0.004) TCGA-D3-A2JH-06 7 119915597 119915597 C T KCND2 Missense_Mutation p.S304F 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 7 121004237 121004237 A C FAM3C Missense_Mutation p.M93R 0.37 deleterious(0) probably_damaging(0.935) TCGA-D3-A2JH-06 7 121653001 121653001 A - PTPRZ1 Frame_Shift_Del p.N1301Tfs*23 0.12 TCGA-D3-A2JH-06 7 124387044 124387044 G A GPR37 Silent p.I459I 0.10 TCGA-D3-A2JH-06 7 128493032 128493032 C T FLNC Missense_Mutation p.S2052F 0.30 tolerated(0.05) benign(0.094) TCGA-D3-A2JH-06 7 129688901 129688901 G A ZC3HC1 Missense_Mutation p.A77V 0.08 deleterious(0.03) probably_damaging(0.978) TCGA-D3-A2JH-06 7 131844263 131844263 G A PLXNA4 Silent p.S1543S 0.09 TCGA-D3-A2JH-06 7 134346736 134346736 G A BPGM Silent p.K159K 0.11 TCGA-D3-A2JH-06 7 135375975 135375975 C T SLC13A4 Missense_Mutation p.G473S 0.07 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JH-06 7 138313025 138313025 G A SVOPL Missense_Mutation p.S316L 0.19 deleterious(0.01) benign(0.002) TCGA-D3-A2JH-06 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.41 deleterious(0) benign(0.411) TCGA-D3-A2JH-06 7 141341194 141341194 G A AGK Silent p.Q291Q 0.16 TCGA-D3-A2JH-06 7 141758086 141758086 C T MGAM Silent p.I1259I 0.32 TCGA-D3-A2JH-06 7 142001095 142001095 G A TRBV2 Missense_Mutation p.E30K 0.11 TCGA-D3-A2JH-06 7 142104120 142104120 G A TRBV6-9 3'Flank 0.21 TCGA-D3-A2JH-06 7 142149113 142149113 C T TRBV5-5 Nonsense_Mutation p.W53* 0.08 TCGA-D3-A2JH-06 7 14216399 14216399 G A DGKB Intron 0.15 TCGA-D3-A2JH-06 7 142197966 142197966 C T TRBV11-2 RNA 0.09 TCGA-D3-A2JH-06 7 142334850 142334850 C T TRBV20-1 Missense_Mutation p.S91F 0.32 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JH-06 7 142499844 142499844 G A TRBC2 Silent p.G154G 0.11 TCGA-D3-A2JH-06 7 142749462 142749462 G A OR6V1 Missense_Mutation p.E9K 0.28 deleterious(0) possibly_damaging(0.481) TCGA-D3-A2JH-06 7 148701084 148701084 G A PDIA4 Silent p.I580I 0.14 TCGA-D3-A2JH-06 7 149174082 149174082 G A ZNF746 Missense_Mutation p.P257S 0.10 deleterious(0.03) benign(0.093) TCGA-D3-A2JH-06 7 149509388 149509388 C T SSPO RNA 0.24 TCGA-D3-A2JH-06 7 150269672 150269672 C T GIMAP4 Missense_Mutation p.P172S 0.11 tolerated(0.11) possibly_damaging(0.491) TCGA-D3-A2JH-06 7 150558086 150558086 T C AOC1 Missense_Mutation p.I682T 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JH-06 7 151135252 151135252 C T CRYGN Missense_Mutation p.G34S 0.23 tolerated(0.16) probably_damaging(0.993) TCGA-D3-A2JH-06 7 151878661 151878661 C T KMT2C Missense_Mutation p.S2095N 0.15 benign(0.005) TCGA-D3-A2JH-06 7 152497740 152497740 G A ACTR3B Silent p.K75K 0.11 TCGA-D3-A2JH-06 7 154379743 154379743 G A DPP6 Intron 0.11 TCGA-D3-A2JH-06 7 195668 195668 C T FAM20C Silent p.S240S 0.10 TCGA-D3-A2JH-06 7 21723549 21723549 C T DNAH11 Missense_Mutation p.P1877S 0.13 probably_damaging(1) TCGA-D3-A2JH-06 7 22196440 22196440 C T RAPGEF5 Missense_Mutation p.E389K 0.11 tolerated(0.29) possibly_damaging(0.546) TCGA-D3-A2JH-06 7 24708173 24708173 C G MPP6 Missense_Mutation p.F336L 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 7 27148122 27148122 C T HOXA3 Silent p.K248K 0.18 TCGA-D3-A2JH-06 7 37780529 37780529 G A GPR141 Silent p.V178V 0.14 TCGA-D3-A2JH-06 7 38725419 38725419 C T FAM183B Missense_Mutation p.A63T 0.18 tolerated(0.16) benign(0.213) TCGA-D3-A2JH-06 7 38783015 38783015 G A VPS41 Silent p.S703S 0.26 TCGA-D3-A2JH-06 7 44741166 44741166 C T OGDH Silent p.L862L 0.14 TCGA-D3-A2JH-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.13 deleterious(0) possibly_damaging(0.869) TCGA-D3-A2JH-06 7 66490002 66490002 A T TYW1 Missense_Mutation p.K326I 0.14 deleterious(0.03) possibly_damaging(0.482) TCGA-D3-A2JH-06 7 70800543 70800543 C T WBSCR17 Silent p.S82S 0.16 TCGA-D3-A2JH-06 7 72954261 72954261 G A BCL7B Silent p.F129F 0.09 TCGA-D3-A2JH-06 7 73245625 73245625 G A CLDN4 Missense_Mutation p.V32M 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2JH-06 7 76922443 76922443 G A CCDC146 Missense_Mutation p.E864K 0.11 deleterious(0.03) benign(0.253) TCGA-D3-A2JH-06 7 77755082 77755082 C T MAGI2 Missense_Mutation p.E1166K 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JH-06 7 82997290 82997290 G A SEMA3E Missense_Mutation p.S647L 0.12 tolerated(0.36) benign(0.006) TCGA-D3-A2JH-06 7 87144652 87144652 C T ABCB1 Silent p.E1059E 0.17 TCGA-D3-A2JH-06 7 95614188 95614188 C T DYNC1I1 Silent p.L231L 0.09 TCGA-D3-A2JH-06 7 98254457 98254457 C T NPTX2 Silent p.I289I 0.17 TCGA-D3-A2JH-06 8 100160116 100160116 C T VPS13B Missense_Mutation p.L631F 0.24 tolerated(0.23) benign(0) TCGA-D3-A2JH-06 8 120569697 120569697 A T ENPP2 3'UTR 0.33 TCGA-D3-A2JH-06 8 120801086 120801086 C A TAF2 Missense_Mutation p.V543F 0.12 deleterious(0.01) benign(0.158) TCGA-D3-A2JH-06 8 121238994 121238994 A G COL14A1 Missense_Mutation p.K665E 0.09 tolerated(0.65) benign(0.007) TCGA-D3-A2JH-06 8 124413191 124413191 C G ATAD2 5'Flank 0.12 TCGA-D3-A2JH-06 8 125029953 125029953 G A FER1L6 Missense_Mutation p.E670K 0.26 deleterious(0.03) benign(0.371) TCGA-D3-A2JH-06 8 131138245 131138245 A T ASAP1 Missense_Mutation p.I491N 0.27 deleterious(0) benign(0.166) TCGA-D3-A2JH-06 8 131921973 131921973 C T ADCY8 Missense_Mutation p.E541K 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JH-06 8 135614552 135614552 G A ZFAT Silent p.S470S 0.09 TCGA-D3-A2JH-06 8 139263089 139263089 C T FAM135B Silent p.L179L 0.24 TCGA-D3-A2JH-06 8 142481272 142481272 C T MROH5 3'UTR 0.25 TCGA-D3-A2JH-06 8 144803758 144803758 C T MAPK15 Missense_Mutation p.S415F 0.21 deleterious(0.04) benign(0.231) TCGA-D3-A2JH-06 8 145096226 145096226 G A SPATC1 Missense_Mutation p.R467Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JH-06 8 21931340 21931340 C T DMTN Missense_Mutation p.H277Y 0.11 tolerated(0.13) benign(0.004) TCGA-D3-A2JH-06 8 23711947 23711947 C T STC1 Silent p.R30R 0.15 TCGA-D3-A2JH-06 8 24256428 24256428 G A ADAMDEC1 Missense_Mutation p.M268I 0.18 tolerated(0.14) benign(0.093) TCGA-D3-A2JH-06 8 30889612 30889612 C T PURG Missense_Mutation p.M229I 0.10 tolerated(0.11) possibly_damaging(0.472) TCGA-D3-A2JH-06 8 36793060 36793060 G A KCNU1 Silent p.E1024E 0.10 TCGA-D3-A2JH-06 8 41812837 41812837 G A KAT6A Silent p.S525S 0.13 TCGA-D3-A2JH-06 8 53049985 53049985 G A ST18 Missense_Mutation p.R743C 0.12 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JH-06 8 54870843 54870844 CC T RGS20 Frame_Shift_Del p.S331Ffs*3 0.13 TCGA-D3-A2JH-06 8 57878841 57878841 G A IMPAD1 Silent p.I239I 0.21 TCGA-D3-A2JH-06 8 65528319 65528319 C T CYP7B1 Nonsense_Mutation p.W260* 0.12 TCGA-D3-A2JH-06 8 67356917 67356917 C T ADHFE1 Missense_Mutation p.S96F 0.13 deleterious(0) possibly_damaging(0.882) TCGA-D3-A2JH-06 8 69005924 69005924 G A PREX2 Missense_Mutation p.E779K 0.13 tolerated_low_confidence(0.27) benign(0.001) TCGA-D3-A2JH-06 8 69021761 69021761 G A PREX2 Missense_Mutation p.E1017K 0.14 deleterious(0.01) benign(0.254) TCGA-D3-A2JH-06 8 70585315 70585315 G A SLCO5A1 Missense_Mutation p.T779I 0.11 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JH-06 8 73479938 73479938 G A KCNB2 5'UTR 0.12 TCGA-D3-A2JH-06 9 104079698 104079698 C A LPPR1 Missense_Mutation p.P289T 0.12 tolerated(0.51) benign(0.016) TCGA-D3-A2JH-06 9 107457503 107457503 G A OR13D1 Silent p.K267K 0.15 TCGA-D3-A2JH-06 9 112705773 112705773 C T PALM2 3'Flank 0.14 TCGA-D3-A2JH-06 9 113169844 113169844 G A SVEP1 Missense_Mutation p.T2679I 0.17 possibly_damaging(0.846) TCGA-D3-A2JH-06 9 116059999 116059999 G A RNF183 Missense_Mutation p.R156C 0.10 tolerated(0.08) benign(0.099) TCGA-D3-A2JH-06 9 118949912 118949912 C T PAPPA Missense_Mutation p.P299S 0.12 tolerated(0.14) possibly_damaging(0.901) TCGA-D3-A2JH-06 9 118982244 118982244 C T PAPPA Silent p.P649P 0.13 TCGA-D3-A2JH-06 9 119188193 119188193 G A ASTN2 Silent p.I1268I 0.10 TCGA-D3-A2JH-06 9 119249696 119249696 G A ASTN2 Missense_Mutation p.P1096S 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-D3-A2JH-06 9 121929643 121929643 G A BRINP1 Silent p.L669L 0.13 TCGA-D3-A2JH-06 9 125282200 125282200 C T OR1J4 Missense_Mutation p.L261F 0.08 tolerated_low_confidence(1) benign(0.006) TCGA-D3-A2JH-06 9 134165620 134165620 G A PPAPDC3 Missense_Mutation p.G79D 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A2JH-06 9 136259426 136259426 C T C9orf96 Missense_Mutation p.R198C 0.19 deleterious(0.02) benign(0.001) TCGA-D3-A2JH-06 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.15 benign(0.399) TCGA-D3-A2JH-06 9 14722166 14722166 G A CER1 Nonsense_Mutation p.Q169* 0.14 TCGA-D3-A2JH-06 9 20926395 20926395 A T FOCAD Missense_Mutation p.Q1019H 0.15 deleterious(0.03) benign(0.044) TCGA-D3-A2JH-06 9 21201839 21201839 G A IFNA7 Missense_Mutation p.S109F 0.15 tolerated(0.66) benign(0.002) TCGA-D3-A2JH-06 9 21481125 21481125 C T IFNE Missense_Mutation p.G190E 0.11 tolerated(0.07) benign(0.056) TCGA-D3-A2JH-06 9 22451457 22451457 G A DMRTA1 Silent p.G354G 0.15 TCGA-D3-A2JH-06 9 27291062 27291062 C T EQTN Splice_Site p.X126_splice 0.21 TCGA-D3-A2JH-06 9 27297013 27297013 G A EQTN Missense_Mutation p.S14F 0.11 tolerated(0.19) probably_damaging(0.996) TCGA-D3-A2JH-06 9 32630177 32630177 C T TAF1L Missense_Mutation p.G1801R 0.15 tolerated_low_confidence(0.29) benign(0.003) TCGA-D3-A2JH-06 9 37512455 37512455 G A FBXO10 3'UTR 0.15 TCGA-D3-A2JH-06 9 38413339 38413339 G A IGFBPL1 Silent p.S194S 0.19 TCGA-D3-A2JH-06 9 5044450 5044450 G A JAK2 Missense_Mutation p.R133Q 0.12 deleterious(0.01) possibly_damaging(0.676) TCGA-D3-A2JH-06 9 91954794 91954794 C T SECISBP2 Missense_Mutation p.P410S 0.15 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JH-06 9 94486934 94486934 C T ROR2 Silent p.K614K 0.18 TCGA-D3-A2JH-06 X 103042837 103042837 C T PLP1 Silent p.A188A 0.12 TCGA-D3-A2JH-06 X 106332042 106332042 T A RBM41 Missense_Mutation p.D184V 0.21 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JH-06 X 115303705 115303705 G A AGTR2 Missense_Mutation p.G58R 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 X 123190022 123190022 A T STAG2 Missense_Mutation p.Y414F 0.24 deleterious(0.05) probably_damaging(1) TCGA-D3-A2JH-06 X 125299167 125299167 C T DCAF12L2 Silent p.P247P 0.33 TCGA-D3-A2JH-06 X 13636018 13636018 C T EGFL6 Silent p.F316F 0.39 TCGA-D3-A2JH-06 X 140994856 140994856 G A MAGEC1 Missense_Mutation p.E556K 0.22 deleterious_low_confidence(0) benign(0) TCGA-D3-A2JH-06 X 153693533 153693533 G A PLXNA3 Missense_Mutation p.S739N 0.15 deleterious(0.04) possibly_damaging(0.512) TCGA-D3-A2JH-06 X 154128148 154128148 C T F8 Nonsense_Mutation p.W2089* 0.20 TCGA-D3-A2JH-06 X 19378893 19378893 C A MAP3K15 Missense_Mutation p.A1306S 0.20 tolerated(0.73) benign(0.002) TCGA-D3-A2JH-06 X 19378894 19378894 C A MAP3K15 Missense_Mutation p.E1305D 0.21 tolerated(0.6) benign(0.034) TCGA-D3-A2JH-06 X 3238787 3238787 C T MXRA5 Missense_Mutation p.E1647K 0.24 tolerated(0.18) possibly_damaging(0.606) TCGA-D3-A2JH-06 X 54359611 54359611 C A WNK3 Missense_Mutation p.D166Y 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 X 55102477 55102477 G A PAGE2B Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.921) TCGA-D3-A2JH-06 X 6451806 6451806 C T VCX3A Missense_Mutation p.E181K 0.23 tolerated(0.16) unknown(0) TCGA-D3-A2JH-06 X 73960361 73960361 G A KIAA2022 Missense_Mutation p.P1344L 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JH-06 X 75004550 75004550 C T MAGEE2 Missense_Mutation p.E113K 0.36 deleterious(0.01) benign(0.129) TCGA-D3-A2JH-06 X 8507772 8507772 C T KAL1 Missense_Mutation p.R461Q 0.28 tolerated(1) benign(0.001) TCGA-D3-A2JK-06 10 101911866 101911866 G A ERLIN1 3'UTR 0.47 TCGA-D3-A2JK-06 10 116213208 116213208 G A ABLIM1 Silent p.L492L 0.52 TCGA-D3-A2JK-06 10 24909034 24909034 C T ARHGAP21 Missense_Mutation p.R597K 0.56 tolerated(0.25) benign(0.101) TCGA-D3-A2JK-06 10 35928630 35928630 G T FZD8 Missense_Mutation p.D576E 0.44 tolerated(1) benign(0.115) TCGA-D3-A2JK-06 10 35928632 35928632 C T FZD8 Missense_Mutation p.D576N 0.46 tolerated(0.56) possibly_damaging(0.72) TCGA-D3-A2JK-06 10 37431076 37431076 C T ANKRD30A Silent p.I361I 0.41 TCGA-D3-A2JK-06 10 37505180 37505180 C T ANKRD30A Missense_Mutation p.H925Y 0.49 deleterious(0) benign(0.403) TCGA-D3-A2JK-06 10 37508179 37508179 C T ANKRD30A Missense_Mutation p.S1124F 0.55 deleterious(0) possibly_damaging(0.831) TCGA-D3-A2JK-06 10 49450341 49450341 G T FRMPD2 Missense_Mutation p.Q144K 0.45 tolerated(0.23) possibly_damaging(0.687) TCGA-D3-A2JK-06 10 73822349 73822349 C T SPOCK2 3'UTR 0.33 TCGA-D3-A2JK-06 10 89720741 89720741 C T PTEN Nonsense_Mutation p.Q298* 0.49 TCGA-D3-A2JK-06 10 95557310 95557310 G A LGI1 Missense_Mutation p.G475E 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 11 108409805 108409805 G A EXPH5 Missense_Mutation p.S130L 0.27 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JK-06 11 118828945 118828945 G A UPK2 3'UTR 0.21 TCGA-D3-A2JK-06 11 119024766 119024766 G A ABCG4 Missense_Mutation p.G90D 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 11 121016362 121016362 C T TECTA Silent p.G1214G 0.32 TCGA-D3-A2JK-06 11 121028933 121028933 G A TECTA Silent p.K1563K 0.43 TCGA-D3-A2JK-06 11 128840469 128840469 G A ARHGAP32 Missense_Mutation p.R1533C 0.31 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-D3-A2JK-06 11 129753057 129753057 G A NFRKB Silent p.I312I 0.38 TCGA-D3-A2JK-06 11 134120208 134120208 G T THYN1 Silent p.P84P 0.27 TCGA-D3-A2JK-06 11 21555941 21555941 G A NELL1 Missense_Mutation p.G556E 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JK-06 11 5322817 5322817 G A OR51B4 Silent p.F120F 0.35 TCGA-D3-A2JK-06 11 5510609 5510609 C T OR52D1 Missense_Mutation p.L225F 0.26 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JK-06 11 56043805 56043805 G A OR5T1 Missense_Mutation p.G231S 0.29 tolerated(0.49) benign(0.057) TCGA-D3-A2JK-06 11 56468739 56468739 G A OR9G1 Silent p.R292R 0.25 TCGA-D3-A2JK-06 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.40 TCGA-D3-A2JK-06 11 62384058 62384058 G A B3GAT3 Missense_Mutation p.R277W 0.36 deleterious(0) possibly_damaging(0.843) TCGA-D3-A2JK-06 11 62415762 62415762 G A INTS5 Missense_Mutation p.A597V 0.09 tolerated(0.6) benign(0.036) TCGA-D3-A2JK-06 11 64606355 64606355 G A CDC42BPG Missense_Mutation p.P299L 0.29 tolerated(0.08) benign(0.01) TCGA-D3-A2JK-06 11 68542866 68542866 T C CPT1A Missense_Mutation p.Y498C 0.34 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JK-06 11 69631106 69631106 C T FGF3 Silent p.R102R 0.32 TCGA-D3-A2JK-06 11 70007349 70007349 C T ANO1 Missense_Mutation p.P554L 0.27 tolerated(0.07) probably_damaging(1) TCGA-D3-A2JK-06 11 7817741 7817741 G A OR5P2 Missense_Mutation p.T250I 0.29 deleterious(0) probably_damaging(0.977) TCGA-D3-A2JK-06 11 78413362 78413362 G A TENM4 Silent p.I1432I 0.31 TCGA-D3-A2JK-06 11 78413364 78413364 T C TENM4 Missense_Mutation p.I1432V 0.33 tolerated(0.22) benign(0.003) TCGA-D3-A2JK-06 12 108957836 108957836 G A ISCU Intron 0.30 TCGA-D3-A2JK-06 12 109182005 109182005 G A SSH1 Missense_Mutation p.S970F 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A2JK-06 12 112632753 112632753 G A HECTD4 Silent p.I2749I 0.38 TCGA-D3-A2JK-06 12 122685132 122685132 G A LRRC43 Silent p.K515K 0.38 TCGA-D3-A2JK-06 12 123430577 123430577 T A ABCB9 Missense_Mutation p.S416C 0.39 deleterious(0) possibly_damaging(0.823) TCGA-D3-A2JK-06 12 123472417 123472417 G A PITPNM2 Missense_Mutation p.A1010V 0.30 tolerated(1) probably_damaging(0.993) TCGA-D3-A2JK-06 12 13717555 13717555 G A GRIN2B Missense_Mutation p.H873Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JK-06 12 14577479 14577479 C T ATF7IP Silent p.I210I 0.26 TCGA-D3-A2JK-06 12 26217895 26217895 G A RASSF8 Missense_Mutation p.E190K 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A2JK-06 12 27533206 27533206 G A ARNTL2 Missense_Mutation p.R118Q 0.36 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JK-06 12 43770369 43770369 G A ADAMTS20 Missense_Mutation p.H1695Y 0.43 tolerated(0.05) possibly_damaging(0.574) TCGA-D3-A2JK-06 12 46598182 46598182 G A SLC38A1 Nonsense_Mutation p.Q242* 0.34 TCGA-D3-A2JK-06 12 47173398 47173398 C A SLC38A4 Missense_Mutation p.S238I 0.36 tolerated(1) benign(0.006) TCGA-D3-A2JK-06 12 50500671 50500671 G A GPD1 Missense_Mutation p.D195N 0.38 tolerated(0.34) benign(0.005) TCGA-D3-A2JK-06 12 51072659 51072659 G A DIP2B Missense_Mutation p.G372R 0.22 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JK-06 12 51695844 51695844 C T BIN2 Missense_Mutation p.R123K 0.22 tolerated(0.05) possibly_damaging(0.896) TCGA-D3-A2JK-06 12 52184212 52184212 G A SCN8A Missense_Mutation p.E1484K 0.36 deleterious(0.03) possibly_damaging(0.867) TCGA-D3-A2JK-06 12 52940108 52940108 G A KRT71 Silent p.I429I 0.33 TCGA-D3-A2JK-06 12 7310207 7310207 C T CLSTN3 Missense_Mutation p.P884S 0.50 tolerated(0.73) benign(0) TCGA-D3-A2JK-06 12 81101933 81101933 G A MYF6 Silent p.Q145Q 0.32 TCGA-D3-A2JK-06 13 101762972 101762972 C T NALCN Missense_Mutation p.D788N 0.34 tolerated(0.95) benign(0.053) TCGA-D3-A2JK-06 13 29599744 29599744 G T MTUS2 Missense_Mutation p.Q313H 0.37 deleterious(0) possibly_damaging(0.891) TCGA-D3-A2JK-06 13 39453036 39453036 G A FREM2 Silent p.V2976V 0.20 TCGA-D3-A2JK-06 13 94197591 94197591 G A GPC6 Missense_Mutation p.S79N 0.27 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JK-06 14 104381447 104381447 C T C14orf2 Missense_Mutation p.G44E 0.40 deleterious(0.03) possibly_damaging(0.739) TCGA-D3-A2JK-06 14 20845893 20845893 G A TEP1 Missense_Mutation p.S1914F 0.37 tolerated(0.61) benign(0.014) TCGA-D3-A2JK-06 14 20876287 20876287 G A TEP1 Silent p.I104I 0.33 TCGA-D3-A2JK-06 14 21790021 21790021 G A RPGRIP1 Silent p.L540L 0.37 TCGA-D3-A2JK-06 14 22539370 22539370 G A TRAV22 Missense_Mutation p.G77E 0.26 tolerated(0.05) possibly_damaging(0.799) TCGA-D3-A2JK-06 14 24592535 24592535 C T DCAF11 3'UTR 0.22 TCGA-D3-A2JK-06 14 26917991 26917991 G A NOVA1 Missense_Mutation p.A233V 0.30 deleterious(0) unknown(0) TCGA-D3-A2JK-06 14 52507555 52507555 G A NID2 Missense_Mutation p.H614Y 0.34 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A2JK-06 14 52734848 52734848 C T PTGDR Nonsense_Mutation p.Q106* 0.31 TCGA-D3-A2JK-06 14 52782085 52782085 C T PTGER2 Silent p.F273F 0.45 TCGA-D3-A2JK-06 14 59970796 59970796 G A JKAMP 3'UTR 0.29 TCGA-D3-A2JK-06 14 64989726 64989726 G A ZBTB1 Missense_Mutation p.D502N 0.31 deleterious(0.05) benign(0.227) TCGA-D3-A2JK-06 14 69795286 69795286 G A GALNT16 Missense_Mutation p.E230K 0.32 deleterious(0.03) benign(0.037) TCGA-D3-A2JK-06 14 70713843 70713843 C T ADAM21P1 RNA 0.23 TCGA-D3-A2JK-06 14 73459951 73459951 G A ZFYVE1 Missense_Mutation p.P368L 0.26 deleterious(0) possibly_damaging(0.739) TCGA-D3-A2JK-06 14 92136232 92136232 G A CATSPERB Missense_Mutation p.P405S 0.29 deleterious(0.02) benign(0.228) TCGA-D3-A2JK-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.28 TCGA-D3-A2JK-06 14 93176153 93176153 G A LGMN Missense_Mutation p.P295L 0.32 tolerated(0.31) benign(0.001) TCGA-D3-A2JK-06 14 94844753 94844753 G A SERPINA1 3'UTR 0.52 TCGA-D3-A2JK-06 15 24921469 24921469 G A NPAP1 Nonsense_Mutation p.W152* 0.37 TCGA-D3-A2JK-06 15 34648407 34648407 C T NUTM1 Missense_Mutation p.P705L 0.34 tolerated(0.69) benign(0.014) TCGA-D3-A2JK-06 15 41482292 41482292 G A EXD1 Missense_Mutation p.S242L 0.31 tolerated(0.07) benign(0.033) TCGA-D3-A2JK-06 15 65553251 65553251 G A PARP16 Silent p.L269L 0.34 TCGA-D3-A2JK-06 15 74627405 74627405 G A CCDC33 Silent p.S705S 0.25 TCGA-D3-A2JK-06 15 83221289 83221289 G A CPEB1 Missense_Mutation p.P381S 0.25 tolerated(0.13) benign(0.245) TCGA-D3-A2JK-06 15 85401310 85401310 G A ALPK3 Missense_Mutation p.R1316Q 0.36 tolerated(0.62) benign(0) TCGA-D3-A2JK-06 15 90135386 90135386 C T TICRR Missense_Mutation p.S507F 0.31 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JK-06 15 91455395 91455395 C T MAN2A2 Silent p.S744S 0.31 TCGA-D3-A2JK-06 15 98514362 98514362 T G ARRDC4 Missense_Mutation p.V401G 0.31 deleterious(0) benign(0.016) TCGA-D3-A2JK-06 15 98514363 98514363 T G ARRDC4 Silent p.V401V 0.30 TCGA-D3-A2JK-06 16 19056266 19056266 C T TMC7 Silent p.I466I 0.30 TCGA-D3-A2JK-06 16 19451378 19451378 G A TMC5 Silent p.R6R 0.27 TCGA-D3-A2JK-06 16 21071678 21071678 C T DNAH3 Splice_Site p.X1241_splice 0.31 TCGA-D3-A2JK-06 16 21147682 21147682 C T DNAH3 Silent p.K283K 0.29 TCGA-D3-A2JK-06 16 21209102 21209102 C T ZP2 Missense_Mutation p.E694K 0.23 tolerated_low_confidence(0.43) benign(0.003) TCGA-D3-A2JK-06 16 3406106 3406106 C T OR2C1 Missense_Mutation p.H56Y 0.32 deleterious(0.04) possibly_damaging(0.719) TCGA-D3-A2JK-06 16 49764708 49764708 T G ZNF423 Missense_Mutation p.D84A 0.09 deleterious(0.03) benign(0.027) TCGA-D3-A2JK-06 16 58073967 58073967 C T MMP15 Missense_Mutation p.S210L 0.33 deleterious(0) possibly_damaging(0.738) TCGA-D3-A2JK-06 16 62055335 62055335 G A CDH8 5'UTR 0.36 TCGA-D3-A2JK-06 16 630930 630930 T G PIGQ Missense_Mutation p.Y497D 0.29 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A2JK-06 16 66436844 66436844 C T CDH5 Silent p.I709I 0.43 TCGA-D3-A2JK-06 16 66612745 66612745 C T CMTM1 Silent p.L234L 0.24 TCGA-D3-A2JK-06 16 68308840 68308840 C T SLC7A6 Silent p.L71L 0.25 TCGA-D3-A2JK-06 16 71127815 71127815 G A HYDIN Nonsense_Mutation p.R451* 0.37 TCGA-D3-A2JK-06 16 71163551 71163551 C T HYDIN Missense_Mutation p.E407K 0.41 probably_damaging(0.969) TCGA-D3-A2JK-06 16 77396150 77396150 C T ADAMTS18 Silent p.L356L 0.26 TCGA-D3-A2JK-06 16 84442070 84442070 G A ATP2C2 Silent p.K129K 0.34 TCGA-D3-A2JK-06 17 10430322 10430322 G A MYH2 Missense_Mutation p.S1308L 0.24 deleterious(0.03) benign(0.012) TCGA-D3-A2JK-06 17 11593108 11593108 C A DNAH9 Silent p.P1323P 0.36 TCGA-D3-A2JK-06 17 1679855 1679855 G A SERPINF1 Missense_Mutation p.M272I 0.39 tolerated(0.36) benign(0.008) TCGA-D3-A2JK-06 17 18022335 18022335 G A MYO15A Missense_Mutation p.R74K 0.53 benign(0.087) TCGA-D3-A2JK-06 17 40009883 40009883 C T KLHL11 3'UTR 0.45 TCGA-D3-A2JK-06 17 40261367 40261367 G A DHX58 Missense_Mutation p.P200L 0.30 tolerated(0.18) benign(0.064) TCGA-D3-A2JK-06 17 40498617 40498617 G A STAT3 Silent p.H81H 0.31 TCGA-D3-A2JK-06 17 40498618 40498618 T A STAT3 Missense_Mutation p.H81L 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 17 41955276 41955276 G A MPP2 Silent p.L520L 0.44 TCGA-D3-A2JK-06 17 45915659 45915659 G A SCRN2 Silent p.L366L 0.14 TCGA-D3-A2JK-06 17 48267732 48267732 C A COL1A1 Missense_Mutation p.G803C 0.08 unknown(0) TCGA-D3-A2JK-06 17 53237190 53237190 C T STXBP4 Missense_Mutation p.P527L 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 17 5359376 5359376 G A DHX33 Missense_Mutation p.P326S 0.45 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JK-06 17 56599115 56599115 C T SEPT4 Silent p.V314V 0.27 TCGA-D3-A2JK-06 17 58134511 58134511 G A HEATR6 Silent p.S659S 0.28 TCGA-D3-A2JK-06 17 58134512 58134512 G A HEATR6 Missense_Mutation p.S659F 0.29 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JK-06 17 60342254 60342254 C T TBC1D3P2 3'Flank 0.38 TCGA-D3-A2JK-06 17 60501661 60501661 G A METTL2A Silent p.Q64Q 0.18 TCGA-D3-A2JK-06 17 60501662 60501662 G A METTL2A Missense_Mutation p.E65K 0.18 deleterious(0.03) possibly_damaging(0.641) TCGA-D3-A2JK-06 17 62850632 62850632 C T LRRC37A3 3'UTR 0.24 TCGA-D3-A2JK-06 17 78195397 78195397 C T SLC26A11 Missense_Mutation p.S13F 0.31 tolerated_low_confidence(0.42) benign(0.001) TCGA-D3-A2JK-06 17 79873357 79873357 G A SIRT7 Missense_Mutation p.L147F 0.24 tolerated(0.33) benign(0.05) TCGA-D3-A2JK-06 17 9590126 9590126 C T USP43 Missense_Mutation p.P418L 0.22 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JK-06 18 12028930 12028930 G A IMPA2 Nonsense_Mutation p.W230* 0.28 TCGA-D3-A2JK-06 18 28898196 28898196 G A DSG1 5'UTR 0.19 TCGA-D3-A2JK-06 18 28909955 28909955 C T DSG1 Missense_Mutation p.S158L 0.35 deleterious(0.01) benign(0.101) TCGA-D3-A2JK-06 18 29790524 29790524 T C MEP1B Missense_Mutation p.L327P 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JK-06 18 31318725 31318725 G A ASXL3 Missense_Mutation p.E453K 0.28 probably_damaging(0.997) TCGA-D3-A2JK-06 18 34854416 34854416 C T CELF4 Missense_Mutation p.G220E 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 18 44560478 44560478 G A TCEB3B Silent p.Y386Y 0.28 TCGA-D3-A2JK-06 18 47373529 47373529 C T MYO5B Silent p.R1482R 0.18 TCGA-D3-A2JK-06 18 60506075 60506075 G A PHLPP1 Missense_Mutation p.S611N 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JK-06 18 61390652 61390652 G A SERPINB11 3'UTR 0.31 TCGA-D3-A2JK-06 19 10071164 10071164 C T COL5A3 Missense_Mutation p.D1721N 0.22 unknown(0) TCGA-D3-A2JK-06 19 10574567 10574567 C T PDE4A Silent p.F614F 0.45 TCGA-D3-A2JK-06 19 10655730 10655730 C T ATG4D Silent p.D139D 0.24 TCGA-D3-A2JK-06 19 15512299 15512299 G A AKAP8L Nonsense_Mutation p.Q160* 0.48 TCGA-D3-A2JK-06 19 17025599 17025599 G A CPAMD8 Silent p.S1265S 0.27 TCGA-D3-A2JK-06 19 18882306 18882306 C T CRTC1 Missense_Mutation p.P475S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JK-06 19 19640257 19640257 G A NDUFA13 3'Flank 0.36 TCGA-D3-A2JK-06 19 20296821 20296821 G A ZNF486 Silent p.L61L 0.33 TCGA-D3-A2JK-06 19 2717367 2717367 G A DIRAS1 Silent p.F146F 0.31 TCGA-D3-A2JK-06 19 35753456 35753456 C T LSR Silent p.L261L 0.29 TCGA-D3-A2JK-06 19 36395078 36395078 G A HCST 3'UTR 0.35 TCGA-D3-A2JK-06 19 37903510 37903510 G A ZNF569 Missense_Mutation p.H684Y 0.21 deleterious(0) probably_damaging(0.943) TCGA-D3-A2JK-06 19 40009764 40009764 C T SELV Silent p.I339I 0.28 TCGA-D3-A2JK-06 19 40411838 40411838 C T FCGBP Missense_Mutation p.D1264N 0.44 probably_damaging(1) TCGA-D3-A2JK-06 19 40430374 40430374 G A FCGBP Silent p.R523R 0.50 TCGA-D3-A2JK-06 19 41071419 41071419 G A SPTBN4 Silent p.Q2002Q 0.25 TCGA-D3-A2JK-06 19 43857896 43857896 G A CD177 Silent p.L10L 0.37 TCGA-D3-A2JK-06 19 43857897 43857897 G A CD177 Missense_Mutation p.G11R 0.37 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JK-06 19 46313980 46313980 C T RSPH6A Missense_Mutation p.D257N 0.26 deleterious(0.05) benign(0.394) TCGA-D3-A2JK-06 19 46417587 46417587 G A NANOS2 Missense_Mutation p.S122F 0.36 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JK-06 19 46891948 46891948 G A PPP5C Missense_Mutation p.G439R 0.29 deleterious(0.04) benign(0.122) TCGA-D3-A2JK-06 19 46891949 46891949 G A PPP5C Missense_Mutation p.G439E 0.29 tolerated(0.05) benign(0.003) TCGA-D3-A2JK-06 19 47354115 47354115 G A AP2S1 5'UTR 0.33 TCGA-D3-A2JK-06 19 49120029 49120029 C T RPL18 Missense_Mutation p.G84E 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JK-06 19 49131265 49131265 G A SPHK2 Missense_Mutation p.G232E 0.29 tolerated(1) possibly_damaging(0.557) TCGA-D3-A2JK-06 19 50957534 50957534 C T MYBPC2 Missense_Mutation p.P641L 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A2JK-06 19 51381887 51381887 G A KLK2 3'UTR 0.54 TCGA-D3-A2JK-06 19 53612853 53612853 C T ZNF415 Missense_Mutation p.E149K 0.31 tolerated(0.15) possibly_damaging(0.908) TCGA-D3-A2JK-06 19 54314291 54314291 C T NLRP12 Missense_Mutation p.E208K 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-D3-A2JK-06 19 55365477 55365477 G T KIR3DL2 Missense_Mutation p.D211Y 0.20 deleterious(0) probably_damaging(0.94) TCGA-D3-A2JK-06 19 55481567 55481567 C T NLRP2 Missense_Mutation p.H62Y 0.28 tolerated(1) possibly_damaging(0.699) TCGA-D3-A2JK-06 19 55676788 55676788 A C DNAAF3 Missense_Mutation p.M159R 0.28 deleterious(0) possibly_damaging(0.859) TCGA-D3-A2JK-06 19 56733464 56733464 G A ZSCAN5A Missense_Mutation p.S324F 0.28 tolerated(0.72) probably_damaging(0.981) TCGA-D3-A2JK-06 19 58850594 58850594 G A ZSCAN22 Missense_Mutation p.G460R 0.30 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JK-06 19 9038404 9038404 G A MUC16 Missense_Mutation p.R12039W 0.36 benign(0.098) TCGA-D3-A2JK-06 19 9062146 9062146 T G MUC16 Missense_Mutation p.S8434R 0.25 unknown(0) TCGA-D3-A2JK-06 19 9067484 9067484 G A MUC16 Silent p.S6654S 0.28 TCGA-D3-A2JK-06 1 110590400 110590400 C T STRIP1 Missense_Mutation p.L524F 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JK-06 1 113010171 113010171 C T WNT2B Silent p.G4G 0.36 TCGA-D3-A2JK-06 1 117552540 117552540 C T CD101 Missense_Mutation p.P38S 0.33 tolerated(0.84) benign(0.178) TCGA-D3-A2JK-06 1 145522896 145522896 C T PEX11B Missense_Mutation p.P253S 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JK-06 1 151509821 151509821 A T CGN Nonstop_Mutation p.*1204Lext*58 0.29 TCGA-D3-A2JK-06 1 152282329 152282329 C T FLG Missense_Mutation p.G1678E 0.30 probably_damaging(0.982) TCGA-D3-A2JK-06 1 154569430 154569430 G A ADAR Silent p.S707S 0.20 TCGA-D3-A2JK-06 1 155028322 155028322 C T ADAM15 Silent p.H223H 0.31 TCGA-D3-A2JK-06 1 155028324 155028324 C T ADAM15 Missense_Mutation p.S224L 0.32 tolerated(0.07) possibly_damaging(0.763) TCGA-D3-A2JK-06 1 167791356 167791356 C T ADCY10 Missense_Mutation p.E1398K 0.40 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JK-06 1 172002324 172002324 G A DNM3 Silent p.R256R 0.31 TCGA-D3-A2JK-06 1 172100315 172100315 G A DNM3 Missense_Mutation p.V516M 0.32 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JK-06 1 173494043 173494043 C T SLC9C2 Missense_Mutation p.D797N 0.29 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JK-06 1 203188415 203188415 G A CHIT1 Nonsense_Mutation p.Q320* 0.33 TCGA-D3-A2JK-06 1 209953943 209953943 G A TRAF3IP3 Missense_Mutation p.E481K 0.32 deleterious(0) probably_damaging(0.913) TCGA-D3-A2JK-06 1 2125233 2125233 G A C1orf86 Silent p.H105H 0.36 TCGA-D3-A2JK-06 1 2125234 2125234 T A C1orf86 Missense_Mutation p.H105L 0.35 tolerated(0.66) benign(0.003) TCGA-D3-A2JK-06 1 225700625 225700625 G A ENAH Missense_Mutation p.P438S 0.24 tolerated(0.27) possibly_damaging(0.573) TCGA-D3-A2JK-06 1 237897011 237897011 G T RYR2 Silent p.L3682L 0.08 TCGA-D3-A2JK-06 1 24668748 24668748 G A GRHL3 Silent p.K397K 0.28 TCGA-D3-A2JK-06 1 247875625 247875625 C T OR6F1 Missense_Mutation p.A145T 0.14 tolerated(0.06) benign(0.311) TCGA-D3-A2JK-06 1 248004339 248004339 G A OR11L1 Missense_Mutation p.P287L 0.26 deleterious(0.03) benign(0.287) TCGA-D3-A2JK-06 1 26524513 26524513 T G CATSPER4 Missense_Mutation p.L208R 0.30 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JK-06 1 27873963 27873963 G A AHDC1 Missense_Mutation p.S1555L 0.26 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-D3-A2JK-06 1 31194207 31194207 G A MATN1 Intron 0.41 TCGA-D3-A2JK-06 1 34006261 34006261 C T CSMD2 Silent p.G3021G 0.30 TCGA-D3-A2JK-06 1 36379791 36379791 C T AGO1 Silent p.A583A 0.33 TCGA-D3-A2JK-06 1 37947294 37947294 G A ZC3H12A Missense_Mutation p.D226N 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 1 40432817 40432817 C T MFSD2A Silent p.F342F 0.27 TCGA-D3-A2JK-06 1 55119323 55119323 C T MROH7 Missense_Mutation p.P242S 0.34 tolerated_low_confidence(0.17) benign(0.046) TCGA-D3-A2JK-06 1 75037410 75037410 C T C1orf173 Silent p.K1328K 0.27 TCGA-D3-A2JK-06 1 75102032 75102032 G A C1orf173 Missense_Mutation p.P179S 0.33 tolerated(0.18) possibly_damaging(0.455) TCGA-D3-A2JK-06 1 78098794 78098794 G A ZZZ3 Silent p.S82S 0.35 TCGA-D3-A2JK-06 1 85624749 85624749 C T SYDE2 Missense_Mutation p.G1090E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 1 93300417 93300417 G A RPL5 Missense_Mutation p.G91S 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JK-06 1 93300418 93300418 G A RPL5 Missense_Mutation p.G91D 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JK-06 1 9777078 9777078 C A PIK3CD Missense_Mutation p.S281Y 0.08 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A2JK-06 20 1960935 1960935 G A PDYN 3'UTR 0.34 TCGA-D3-A2JK-06 20 23349486 23349486 C T GZF1 Missense_Mutation p.S516F 0.31 tolerated(0.09) possibly_damaging(0.457) TCGA-D3-A2JK-06 20 2644840 2644840 C T IDH3B 5'UTR 0.53 TCGA-D3-A2JK-06 20 2644841 2644841 C T IDH3B 5'UTR 0.50 TCGA-D3-A2JK-06 20 35075130 35075130 G A DLGAP4 Missense_Mutation p.E480K 0.36 tolerated(0.07) possibly_damaging(0.487) TCGA-D3-A2JK-06 20 36999934 36999934 G A LBP Missense_Mutation p.E410K 0.27 tolerated(0.08) benign(0.39) TCGA-D3-A2JK-06 20 37150200 37150200 C T RALGAPB Missense_Mutation p.T493I 0.25 tolerated(0.17) possibly_damaging(0.487) TCGA-D3-A2JK-06 20 37632434 37632434 C T DHX35 Nonsense_Mutation p.R299* 0.31 TCGA-D3-A2JK-06 20 52831950 52831950 G A PFDN4 Missense_Mutation p.E82K 0.27 tolerated(0.19) benign(0.424) TCGA-D3-A2JK-06 20 55033749 55033749 G A CASS4 Silent p.A769A 0.16 TCGA-D3-A2JK-06 20 57036316 57036316 G A APCDD1L Missense_Mutation p.R346C 0.36 deleterious(0.03) possibly_damaging(0.855) TCGA-D3-A2JK-06 20 61538515 61538515 G A DIDO1 Missense_Mutation p.P453L 0.26 benign(0.005) TCGA-D3-A2JK-06 21 38390367 38390367 G A RIPPLY3 Missense_Mutation p.E145K 0.22 tolerated(0.1) possibly_damaging(0.801) TCGA-D3-A2JK-06 21 40824035 40824035 G A SH3BGR Missense_Mutation p.V68M 0.31 deleterious(0.01) possibly_damaging(0.78) TCGA-D3-A2JK-06 21 41447102 41447102 C T DSCAM Missense_Mutation p.E1584K 0.20 tolerated(0.4) benign(0.003) TCGA-D3-A2JK-06 22 23135342 23135342 G A IGLV2-11 Missense_Mutation p.M68I 0.32 tolerated_low_confidence(0.32) benign(0.002) TCGA-D3-A2JK-06 22 24034621 24034621 G A RGL4 Silent p.R93R 0.31 TCGA-D3-A2JK-06 22 25625521 25625521 C T CRYBB2 Missense_Mutation p.S142L 0.23 deleterious(0) probably_damaging(0.96) TCGA-D3-A2JK-06 22 26706636 26706636 G A SEZ6L Silent p.R505R 0.20 TCGA-D3-A2JK-06 22 30069410 30069410 G C NF2 Silent p.L425L 0.41 TCGA-D3-A2JK-06 22 32200897 32200897 C T DEPDC5 Missense_Mutation p.H405Y 0.32 tolerated(0.22) benign(0.005) TCGA-D3-A2JK-06 22 32810220 32810220 C T BPIFC 3'UTR 0.35 TCGA-D3-A2JK-06 22 38119694 38119694 C T TRIOBP Silent p.N377N 0.27 TCGA-D3-A2JK-06 22 42172262 42172262 C T MEI1 Missense_Mutation p.P901S 0.28 tolerated(0.71) benign(0.007) TCGA-D3-A2JK-06 22 45960832 45960832 C T FBLN1 Intron 0.27 TCGA-D3-A2JK-06 22 50307357 50307357 G A ALG12 Silent p.A19A 0.27 TCGA-D3-A2JK-06 2 102789291 102789291 A T IL1R1 Silent p.I328I 0.25 TCGA-D3-A2JK-06 2 108487450 108487450 C T RGPD4 Missense_Mutation p.S997L 0.29 deleterious(0.04) benign(0.008) TCGA-D3-A2JK-06 2 114399747 114399747 C T RABL2A 3'UTR 0.38 TCGA-D3-A2JK-06 2 128339539 128339539 C T MYO7B Missense_Mutation p.S385F 0.20 deleterious(0.02) benign(0.032) TCGA-D3-A2JK-06 2 154801150 154801150 G A GALNT13 Missense_Mutation p.R47K 0.33 tolerated(0.91) benign(0.01) TCGA-D3-A2JK-06 2 167168009 167168009 C A SCN9A Missense_Mutation p.K86N 0.33 tolerated(0.15) benign(0.044) TCGA-D3-A2JK-06 2 175263026 175263026 C T SCRN3 Silent p.S5S 0.20 TCGA-D3-A2JK-06 2 179401091 179401091 A G TTN Silent p.L33461L 0.35 TCGA-D3-A2JK-06 2 179588354 179588354 C T TTN Missense_Mutation p.S7158N 0.37 TCGA-D3-A2JK-06 2 179612686 179612686 C T TTN Intron 0.38 TCGA-D3-A2JK-06 2 188225352 188225355 AATG - CALCRL Frame_Shift_Del p.H251* 0.26 TCGA-D3-A2JK-06 2 189849645 189849645 C T COL3A1 Missense_Mutation p.P80L 0.23 unknown(0) TCGA-D3-A2JK-06 2 231113639 231113639 G A SP140 Missense_Mutation p.G311E 0.40 tolerated(0.27) benign(0.174) TCGA-D3-A2JK-06 2 233347635 233347635 C T ECEL1 Silent p.K537K 0.31 TCGA-D3-A2JK-06 2 234581071 234581071 C T UGT1A9 Missense_Mutation p.P164L 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 2 240055964 240055964 G A HDAC4 Missense_Mutation p.P424L 0.32 tolerated(0.83) benign(0.047) TCGA-D3-A2JK-06 2 241448822 241448822 G A ANKMY1 Silent p.N690N 0.40 TCGA-D3-A2JK-06 2 241808371 241808371 C T AGXT Missense_Mutation p.P30L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JK-06 2 242402844 242402844 G A FARP2 Missense_Mutation p.R591K 0.52 tolerated(0.43) possibly_damaging(0.868) TCGA-D3-A2JK-06 2 27305949 27305949 G A EMILIN1 Missense_Mutation p.V504M 0.50 benign(0.038) TCGA-D3-A2JK-06 2 27462330 27462330 C T CAD Silent p.I1795I 0.40 TCGA-D3-A2JK-06 2 27728604 27728604 C T GCKR Missense_Mutation p.S257F 0.35 tolerated(0.05) probably_damaging(0.953) TCGA-D3-A2JK-06 2 29430034 29430034 T C ALK Intron 0.28 TCGA-D3-A2JK-06 2 37096793 37096793 G A STRN Missense_Mutation p.A468V 0.38 tolerated(0.08) benign(0.091) TCGA-D3-A2JK-06 2 44055382 44055382 A T ABCG5 Intron 0.41 TCGA-D3-A2JK-06 2 44065037 44065037 C T ABCG5 Silent p.Q67Q 0.27 TCGA-D3-A2JK-06 2 55490859 55490859 C T MTIF2 Missense_Mutation p.A46T 0.41 tolerated_low_confidence(0.22) benign(0.004) TCGA-D3-A2JK-06 2 69207947 69207947 G A GKN1 Missense_Mutation p.E198K 0.36 deleterious_low_confidence(0.02) benign(0.162) TCGA-D3-A2JK-06 2 74884745 74884745 G A SEMA4F Silent p.K117K 0.20 TCGA-D3-A2JK-06 2 86491156 86491156 C T REEP1 Nonsense_Mutation p.W45* 0.24 TCGA-D3-A2JK-06 2 98928855 98928855 C T VWA3B 3'UTR 0.29 TCGA-D3-A2JK-06 2 99722033 99722033 C T TSGA10 Missense_Mutation p.R113Q 0.33 tolerated(0.08) probably_damaging(0.977) TCGA-D3-A2JK-06 3 107885815 107885815 G A IFT57 Silent p.L289L 0.47 TCGA-D3-A2JK-06 3 108117571 108117571 G A MYH15 Silent p.S1702S 0.30 TCGA-D3-A2JK-06 3 108725917 108725917 C T MORC1 Missense_Mutation p.E576K 0.27 tolerated(0.46) benign(0) TCGA-D3-A2JK-06 3 112710060 112710060 G A GTPBP8 Missense_Mutation p.D72N 0.30 tolerated(0.28) benign(0.003) TCGA-D3-A2JK-06 3 11300948 11300948 C T HRH1 Silent p.I75I 0.29 TCGA-D3-A2JK-06 3 128628837 128628837 C T RP11-723O4.6 3'UTR 0.28 TCGA-D3-A2JK-06 3 137981361 137981361 A T NME9 3'UTR 0.28 TCGA-D3-A2JK-06 3 140397412 140397412 C T TRIM42 Missense_Mutation p.S114F 0.44 tolerated(0.08) benign(0.01) TCGA-D3-A2JK-06 3 1445145 1445145 C T CNTN6 3'UTR 0.33 TCGA-D3-A2JK-06 3 15345784 15345784 G A SH3BP5 Intron 0.30 TCGA-D3-A2JK-06 3 160804148 160804148 G A B3GALNT1 Missense_Mutation p.S132F 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A2JK-06 3 165491209 165491209 G C BCHE Missense_Mutation p.N590K 0.31 tolerated(0.28) benign(0.161) TCGA-D3-A2JK-06 3 182545993 182545993 T G ATP11B Missense_Mutation p.V77G 0.27 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JK-06 3 182545994 182545994 T A ATP11B Silent p.V77V 0.27 TCGA-D3-A2JK-06 3 189612269 189612269 G A TP63 Missense_Mutation p.R674H 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.656) TCGA-D3-A2JK-06 3 197505288 197505288 C T FYTTD1 Missense_Mutation p.P271S 0.31 deleterious(0) possibly_damaging(0.874) TCGA-D3-A2JK-06 3 39229628 39229628 C T XIRP1 Missense_Mutation p.D437N 0.28 deleterious(0.03) possibly_damaging(0.841) TCGA-D3-A2JK-06 3 46560396 46560396 C T LRRC2 3'UTR 0.34 TCGA-D3-A2JK-06 3 46939630 46939630 G A PTH1R Nonsense_Mutation p.W164* 0.28 TCGA-D3-A2JK-06 3 47453620 47453620 C T PTPN23 Silent p.F1370F 0.36 TCGA-D3-A2JK-06 3 48453414 48453414 G A PLXNB1 Missense_Mutation p.S1702F 0.30 deleterious(0.01) possibly_damaging(0.748) TCGA-D3-A2JK-06 3 49692712 49692712 C T BSN Missense_Mutation p.P1908L 0.46 unknown(0) TCGA-D3-A2JK-06 3 49692713 49692713 C T BSN Silent p.P1908P 0.46 TCGA-D3-A2JK-06 3 52598133 52598133 T G PBRM1 Missense_Mutation p.K1245Q 0.45 deleterious(0) possibly_damaging(0.607) TCGA-D3-A2JK-06 3 58064461 58064461 G A FLNB Missense_Mutation p.E187K 0.54 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JK-06 3 69171272 69171272 C T LMOD3 Missense_Mutation p.R89Q 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JK-06 3 93754282 93754282 T C ARL13B Splice_Site p.X162_splice 0.33 TCGA-D3-A2JK-06 4 106510452 106510452 C T ARHGEF38 Missense_Mutation p.P82S 0.34 tolerated(0.7) benign(0.001) TCGA-D3-A2JK-06 4 111409721 111409721 A G ENPEP Silent p.E223E 0.31 TCGA-D3-A2JK-06 4 113353727 113353727 C T ALPK1 Silent p.H1008H 0.20 TCGA-D3-A2JK-06 4 113353728 113353728 C A ALPK1 Silent p.R1009R 0.21 TCGA-D3-A2JK-06 4 118975378 118975378 C T NDST3 Nonsense_Mutation p.Q105* 0.29 TCGA-D3-A2JK-06 4 121958511 121958511 C T NDNF Silent p.L205L 0.25 TCGA-D3-A2JK-06 4 122062995 122062995 A T TNIP3 Silent p.A364A 0.35 TCGA-D3-A2JK-06 4 123109071 123109071 C T KIAA1109 Missense_Mutation p.H217Y 0.44 possibly_damaging(0.882) TCGA-D3-A2JK-06 4 126371771 126371771 C T FAT4 Silent p.F3200F 0.21 TCGA-D3-A2JK-06 4 138442609 138442609 C T PCDH18 Silent p.E994E 0.31 TCGA-D3-A2JK-06 4 151023695 151023695 C T DCLK2 Missense_Mutation p.P163S 0.33 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JK-06 4 155219053 155219053 G A DCHS2 Missense_Mutation p.S1683F 0.39 deleterious(0.04) possibly_damaging(0.859) TCGA-D3-A2JK-06 4 155461135 155461135 C T PLRG1 Missense_Mutation p.R337K 0.26 tolerated(1) benign(0.005) TCGA-D3-A2JK-06 4 169204660 169204660 G A DDX60 Silent p.I553I 0.36 TCGA-D3-A2JK-06 4 169204743 169204743 G A DDX60 Missense_Mutation p.P526S 0.26 tolerated(0.06) benign(0.023) TCGA-D3-A2JK-06 4 177609039 177609039 C T VEGFC Nonsense_Mutation p.W249* 0.27 TCGA-D3-A2JK-06 4 6882551 6882551 G C KIAA0232 Missense_Mutation p.R1349T 0.20 tolerated_low_confidence(0.09) benign(0.156) TCGA-D3-A2JK-06 4 74347467 74347467 C T AFM 5'UTR 0.31 TCGA-D3-A2JK-06 4 77661959 77661959 C T SHROOM3 Missense_Mutation p.P878L 0.33 tolerated(0.19) probably_damaging(0.946) TCGA-D3-A2JK-06 4 87968195 87968195 C T AFF1 Missense_Mutation p.R170C 0.35 tolerated(0.08) benign(0.315) TCGA-D3-A2JK-06 5 109153015 109153015 C T MAN2A1 Missense_Mutation p.S662L 0.62 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A2JK-06 5 13864514 13864514 C T DNAH5 Missense_Mutation p.E1530K 0.24 benign(0.005) TCGA-D3-A2JK-06 5 139936891 139936891 G A SRA1 Intron 0.71 TCGA-D3-A2JK-06 5 139941689 139941689 C T APBB3 Missense_Mutation p.G208S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JK-06 5 139941690 139941690 C T APBB3 Silent p.K207K 0.38 TCGA-D3-A2JK-06 5 140603401 140603401 G A PCDHB14 Silent p.V108V 0.46 TCGA-D3-A2JK-06 5 147719230 147719230 G A SPINK9 Silent p.K72K 0.49 TCGA-D3-A2JK-06 5 19544014 19544014 G A CDH18 Missense_Mutation p.P452S 0.18 tolerated(0.51) benign(0.025) TCGA-D3-A2JK-06 5 35070305 35070305 G A PRLR Silent p.Y202Y 0.20 TCGA-D3-A2JK-06 5 35753855 35753855 C A SPEF2 Missense_Mutation p.L1154M 0.23 deleterious(0) probably_damaging(0.975) TCGA-D3-A2JK-06 5 5462266 5462266 C T KIAA0947 Missense_Mutation p.P940L 0.28 tolerated(0.09) benign(0.014) TCGA-D3-A2JK-06 5 647960 647960 G A CEP72 Silent p.V569V 0.43 TCGA-D3-A2JK-06 5 70809023 70809023 C T BDP1 Missense_Mutation p.P1420L 0.36 deleterious(0.02) benign(0.021) TCGA-D3-A2JK-06 5 90050855 90050855 T C GPR98 Silent p.D3811D 0.46 TCGA-D3-A2JK-06 6 100057097 100057097 G A PRDM13 Missense_Mutation p.G104E 0.32 deleterious(0.04) possibly_damaging(0.462) TCGA-D3-A2JK-06 6 134491988 134491988 A G SGK1 Silent p.I463I 0.31 TCGA-D3-A2JK-06 6 152652462 152652462 G A SYNE1 Missense_Mutation p.S4453F 0.22 probably_damaging(0.976) TCGA-D3-A2JK-06 6 15501487 15501487 C T JARID2 Silent p.A765A 0.26 TCGA-D3-A2JK-06 6 160968932 160968932 C T LPA Silent p.K1731K 0.22 TCGA-D3-A2JK-06 6 168475997 168475997 C T FRMD1 Missense_Mutation p.E78K 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JK-06 6 27100482 27100482 C T HIST1H2BJ Silent p.K16K 0.30 TCGA-D3-A2JK-06 6 27792209 27792209 G A HIST1H4J Missense_Mutation p.G103S 0.44 tolerated_low_confidence(0.09) benign(0.244) TCGA-D3-A2JK-06 6 32163111 32163111 A C NOTCH4 3'UTR 0.47 TCGA-D3-A2JK-06 6 39328221 39328221 G A KIF6 Silent p.L678L 0.35 TCGA-D3-A2JK-06 6 43474984 43474984 C T LRRC73 Missense_Mutation p.E315K 0.21 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A2JK-06 6 44219204 44219204 C T HSP90AB1 Silent p.S391S 0.33 TCGA-D3-A2JK-06 6 44219205 44219205 C T HSP90AB1 Nonsense_Mutation p.R392* 0.36 TCGA-D3-A2JK-06 6 46107385 46107385 C T ENPP4 Missense_Mutation p.S22F 0.41 tolerated(0.7) benign(0.027) TCGA-D3-A2JK-06 6 52344018 52344018 A T EFHC1 Missense_Mutation p.S488C 0.28 deleterious(0.02) benign(0.246) TCGA-D3-A2JK-06 6 62611214 62611214 C T KHDRBS2 Silent p.E182E 0.26 TCGA-D3-A2JK-06 6 74078487 74078487 C T OOEP 3'UTR 0.27 TCGA-D3-A2JK-06 6 74078488 74078488 C T OOEP 3'UTR 0.25 TCGA-D3-A2JK-06 7 100212522 100212522 C T MOSPD3 Missense_Mutation p.L182F 0.35 tolerated(0.23) benign(0.004) TCGA-D3-A2JK-06 7 100549494 100549494 G A MUC3A Silent p.T25T 0.25 TCGA-D3-A2JK-06 7 100680207 100680207 G A MUC17 Missense_Mutation p.S1837N 0.35 benign(0.01) TCGA-D3-A2JK-06 7 100687012 100687012 C T MUC17 Silent p.F4105F 0.26 TCGA-D3-A2JK-06 7 107708553 107708553 C T LAMB4 Missense_Mutation p.G785E 0.33 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A2JK-06 7 112129972 112129972 C T LSMEM1 Nonsense_Mutation p.Q122* 0.24 TCGA-D3-A2JK-06 7 129103887 129103887 C T STRIP2 Silent p.I518I 0.34 TCGA-D3-A2JK-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JK-06 7 141952365 141952365 G A PRSS58 Missense_Mutation p.A168V 0.37 deleterious(0) possibly_damaging(0.881) TCGA-D3-A2JK-06 7 144101719 144101719 C T NOBOX Missense_Mutation p.G47E 0.22 deleterious_low_confidence(0) possibly_damaging(0.604) TCGA-D3-A2JK-06 7 21805124 21805124 G A DNAH11 Missense_Mutation p.A3014T 0.28 benign(0.018) TCGA-D3-A2JK-06 7 2296511 2296511 C T SNX8 Missense_Mutation p.E428K 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A2JK-06 7 40234577 40234577 C T SUGCT Silent p.V141V 0.32 TCGA-D3-A2JK-06 7 50513686 50513686 G T FIGNL1 Missense_Mutation p.P434T 0.39 deleterious(0) probably_damaging(0.947) TCGA-D3-A2JK-06 7 53103787 53103787 C T POM121L12 Silent p.I141I 0.31 TCGA-D3-A2JK-06 7 56066894 56066894 C T GBAS 3'UTR 0.31 TCGA-D3-A2JK-06 7 87041281 87041281 G A ABCB4 Missense_Mutation p.S951F 0.36 deleterious(0.01) possibly_damaging(0.82) TCGA-D3-A2JK-06 8 113318319 113318319 C T CSMD3 Missense_Mutation p.R2663Q 0.27 tolerated(0.34) possibly_damaging(0.842) TCGA-D3-A2JK-06 8 119936867 119936867 C T TNFRSF11B Missense_Mutation p.A318T 0.23 tolerated(0.79) benign(0.002) TCGA-D3-A2JK-06 8 121644849 121644849 G A SNTB1 Silent p.I277I 0.30 TCGA-D3-A2JK-06 8 130789704 130789704 C T GSDMC Missense_Mutation p.D44N 0.34 tolerated(0.91) benign(0.005) TCGA-D3-A2JK-06 8 131124416 131124416 G A ASAP1 Silent p.F775F 0.33 TCGA-D3-A2JK-06 8 139611141 139611141 C T COL22A1 Missense_Mutation p.G1396R 0.29 unknown(0) TCGA-D3-A2JK-06 8 143563057 143563057 C T BAI1 Silent p.T705T 0.50 TCGA-D3-A2JK-06 8 145740345 145740345 G A RECQL4 Missense_Mutation p.P532L 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JK-06 8 145830936 145830936 G A ARHGAP39 Missense_Mutation p.P22S 0.35 tolerated_low_confidence(0.78) benign(0.002) TCGA-D3-A2JK-06 8 1581004 1581004 G A DLGAP2 Silent p.A454A 0.50 TCGA-D3-A2JK-06 8 1817363 1817363 C T ARHGEF10 Missense_Mutation p.P209L 0.27 deleterious(0) probably_damaging(0.954) TCGA-D3-A2JK-06 8 26238035 26238035 C T BNIP3L 5'Flank 0.29 TCGA-D3-A2JK-06 8 30694961 30694961 G A TEX15 Missense_Mutation p.P2564S 0.30 tolerated(0.08) benign(0.357) TCGA-D3-A2JK-06 8 38852864 38852864 G A TM2D2 Silent p.S96S 0.24 TCGA-D3-A2JK-06 8 38852865 38852865 G A TM2D2 Missense_Mutation p.S96F 0.27 tolerated(0.74) benign(0.001) TCGA-D3-A2JK-06 8 55542087 55542087 C T RP1 Missense_Mutation p.S1882F 0.30 deleterious(0.01) possibly_damaging(0.646) TCGA-D3-A2JK-06 8 72184013 72184013 G A EYA1 Missense_Mutation p.P316S 0.28 tolerated(0.33) probably_damaging(0.951) TCGA-D3-A2JK-06 8 95262563 95262563 G A GEM Missense_Mutation p.S289F 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JK-06 8 97258595 97258595 C T MTERFD1 Silent p.V255V 0.23 TCGA-D3-A2JK-06 9 104357001 104357001 C T PPP3R2 Missense_Mutation p.G71E 0.28 tolerated(0.05) possibly_damaging(0.491) TCGA-D3-A2JK-06 9 109691314 109691314 C T ZNF462 Silent p.P1707P 0.27 TCGA-D3-A2JK-06 9 121929380 121929380 C T BRINP1 Missense_Mutation p.M756I 0.33 deleterious(0.01) benign(0.003) TCGA-D3-A2JK-06 9 125437994 125437994 G A OR1L3 Missense_Mutation p.E196K 0.29 tolerated(0.11) benign(0.17) TCGA-D3-A2JK-06 9 131909831 131909831 C T PPP2R4 3'UTR 0.56 TCGA-D3-A2JK-06 9 136287506 136287506 C T ADAMTS13 5'UTR 0.55 TCGA-D3-A2JK-06 9 139353682 139353682 G A SEC16A Silent p.F1771F 0.38 TCGA-D3-A2JK-06 9 139417600 139417600 G A NOTCH1 Silent p.P148P 0.30 TCGA-D3-A2JK-06 9 140729342 140729342 C T EHMT1 Silent p.A1278A 0.64 TCGA-D3-A2JK-06 9 14307337 14307337 C T NFIB Silent p.K71K 0.49 TCGA-D3-A2JK-06 9 14841507 14841507 C T FREM1 Missense_Mutation p.E607K 0.46 tolerated(0.06) benign(0.18) TCGA-D3-A2JK-06 9 21971209 21971209 T C CDKN2A Splice_Site p.X51_splice 0.27 TCGA-D3-A2JK-06 9 6013112 6013112 A G RANBP6 Silent p.V832V 0.57 TCGA-D3-A2JK-06 9 79117777 79117777 T A GCNT1 Missense_Mutation p.D160E 0.36 tolerated(1) benign(0.002) TCGA-D3-A2JK-06 9 88272447 88272447 C T AGTPBP1 Missense_Mutation p.G271E 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A2JK-06 X 106884133 106884133 G A PRPS1 Missense_Mutation p.S103N 0.62 deleterious(0.03) benign(0.057) TCGA-D3-A2JK-06 X 115574857 115574857 C T SLC6A14 Silent p.I185I 0.63 TCGA-D3-A2JK-06 X 149013557 149013557 G A MAGEA8 Missense_Mutation p.E171K 0.53 deleterious(0.04) probably_damaging(0.964) TCGA-D3-A2JK-06 X 34149184 34149184 G T FAM47A Silent p.P404P 0.63 TCGA-D3-A2JK-06 X 34149264 34149264 C T FAM47A Missense_Mutation p.E378K 0.58 deleterious(0.04) probably_damaging(0.953) TCGA-D3-A2JK-06 X 38037563 38037563 G A SRPX Silent p.V44V 0.70 TCGA-D3-A2JK-06 X 55051268 55051268 G A ALAS2 Missense_Mutation p.P63S 0.73 tolerated(0.28) benign(0.004) TCGA-D3-A2JL-06 10 106924130 106924130 G A SORCS3 Nonsense_Mutation p.W601* 0.38 TCGA-D3-A2JL-06 10 106924131 106924131 G A SORCS3 Nonsense_Mutation p.W601* 0.38 TCGA-D3-A2JL-06 10 123842478 123842478 C T TACC2 Missense_Mutation p.P155S 0.26 benign(0.031) TCGA-D3-A2JL-06 10 124350197 124350197 G A DMBT1 Silent p.S708S 0.34 TCGA-D3-A2JL-06 10 124753954 124753954 G A IKZF5 Missense_Mutation p.P201L 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A2JL-06 10 127436243 127436243 T A EDRF1 Missense_Mutation p.S985T 0.18 deleterious(0.05) possibly_damaging(0.889) TCGA-D3-A2JL-06 10 15255119 15255119 C T FAM171A1 Missense_Mutation p.R823K 0.27 tolerated(0.86) benign(0.136) TCGA-D3-A2JL-06 10 28225687 28225687 C T ARMC4 Nonsense_Mutation p.W740* 0.15 TCGA-D3-A2JL-06 10 34399990 34399990 G A PARD3 3'UTR 0.23 TCGA-D3-A2JL-06 10 44871456 44871456 C T CXCL12 3'Flank 0.12 TCGA-D3-A2JL-06 10 50856615 50856615 C T CHAT Silent p.I448I 0.34 TCGA-D3-A2JL-06 10 50944148 50944148 C T OGDHL Missense_Mutation p.E944K 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 10 69991054 69991054 C T ATOH7 Silent p.A127A 0.18 TCGA-D3-A2JL-06 10 88419090 88419090 C T OPN4 Missense_Mutation p.S233F 0.14 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JL-06 10 90427420 90427420 G A LIPF Missense_Mutation p.G77E 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2JL-06 10 92508946 92508946 G A HTR7 Silent p.N315N 0.21 TCGA-D3-A2JL-06 10 93851667 93851667 T C CPEB3 Missense_Mutation p.D536G 0.35 deleterious(0) benign(0.275) TCGA-D3-A2JL-06 10 98105749 98105749 C T OPALIN Missense_Mutation p.M125I 0.45 tolerated_low_confidence(0.28) benign(0.216) TCGA-D3-A2JL-06 11 1019476 1019476 C T MUC6 Missense_Mutation p.A1277T 0.19 unknown(0) TCGA-D3-A2JL-06 11 1019477 1019477 C T MUC6 Silent p.T1276T 0.19 TCGA-D3-A2JL-06 11 17140817 17140817 C T PIK3C2A Missense_Mutation p.E964K 0.22 tolerated(0.15) benign(0.047) TCGA-D3-A2JL-06 11 5475540 5475540 C T OR51I2 Silent p.V274V 0.20 TCGA-D3-A2JL-06 11 554044 554044 C T LRRC56 Missense_Mutation p.P466L 0.27 tolerated(0.2) benign(0.003) TCGA-D3-A2JL-06 11 55904804 55904804 G A OR8J3 Missense_Mutation p.L131F 0.29 deleterious(0.03) possibly_damaging(0.707) TCGA-D3-A2JL-06 11 57947716 57947716 C T OR9Q1 Missense_Mutation p.S267L 0.21 tolerated(1) benign(0.012) TCGA-D3-A2JL-06 11 59245544 59245544 C T OR4D10 Silent p.L214L 0.25 TCGA-D3-A2JL-06 11 60541315 60541315 G A MS4A15 Silent p.V168V 0.22 TCGA-D3-A2JL-06 11 60541316 60541316 G A MS4A15 Missense_Mutation p.D169N 0.21 tolerated(0.36) benign(0.047) TCGA-D3-A2JL-06 11 64883442 64883442 C T TM7SF2 Missense_Mutation p.R392W 0.37 deleterious(0.01) possibly_damaging(0.832) TCGA-D3-A2JL-06 11 65734802 65734802 G A SART1 Missense_Mutation p.D421N 0.18 deleterious(0) probably_damaging(0.911) TCGA-D3-A2JL-06 11 66613398 66613398 G A RCE1 Silent p.A274A 0.13 TCGA-D3-A2JL-06 11 67353993 67353993 T C GSTP1 Missense_Mutation p.F193S 0.39 deleterious(0) possibly_damaging(0.551) TCGA-D3-A2JL-06 11 74554479 74554479 C T XRRA1 Nonsense_Mutation p.W715* 0.30 TCGA-D3-A2JL-06 11 77412870 77412870 C T RSF1 Silent p.K468K 0.11 TCGA-D3-A2JL-06 11 89891349 89891349 G A NAALAD2 Missense_Mutation p.G278E 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A2JL-06 12 10783853 10783853 C T STYK1 Missense_Mutation p.G81E 0.38 tolerated(1) benign(0.025) TCGA-D3-A2JL-06 12 123829915 123829915 G A SBNO1 Missense_Mutation p.P147L 0.30 deleterious_low_confidence(0.01) benign(0.003) TCGA-D3-A2JL-06 12 124330613 124330613 C T DNAH10 Missense_Mutation p.T1791I 0.31 benign(0.062) TCGA-D3-A2JL-06 12 13240172 13240172 C T GSG1 Missense_Mutation p.M197I 0.11 deleterious(0.01) possibly_damaging(0.452) TCGA-D3-A2JL-06 12 132627336 132627336 G A DDX51 Missense_Mutation p.P203S 0.13 tolerated(0.06) benign(0.027) TCGA-D3-A2JL-06 12 14993586 14993586 C T ART4 Missense_Mutation p.E216K 0.17 tolerated(0.08) benign(0.105) TCGA-D3-A2JL-06 12 21690091 21690091 G A GYS2 Missense_Mutation p.P637S 0.30 tolerated(0.26) probably_damaging(1) TCGA-D3-A2JL-06 12 21716251 21716251 A G GYS2 Silent p.V284V 0.37 TCGA-D3-A2JL-06 12 22025665 22025665 C T ABCC9 Splice_Site p.X698_splice 0.30 TCGA-D3-A2JL-06 12 369146 369146 C T SLC6A13 Missense_Mutation p.E25K 0.20 tolerated(0.74) benign(0.001) TCGA-D3-A2JL-06 12 40704267 40704267 G A LRRK2 Missense_Mutation p.G1451D 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 12 42853782 42853782 T G PRICKLE1 Missense_Mutation p.E775D 0.39 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A2JL-06 12 43826523 43826523 C T ADAMTS20 Missense_Mutation p.E938K 0.36 tolerated(1) benign(0) TCGA-D3-A2JL-06 12 52306947 52306947 G A ACVRL1 Silent p.K42K 0.29 TCGA-D3-A2JL-06 12 52775207 52775207 C T KRT84 Missense_Mutation p.A339T 0.16 deleterious(0.01) benign(0.166) TCGA-D3-A2JL-06 12 53216811 53216811 G A KRT79 Silent p.S452S 0.26 TCGA-D3-A2JL-06 12 53457697 53457697 A G TENC1 3'UTR 0.22 TCGA-D3-A2JL-06 12 57490247 57490247 G A STAT6 3'UTR 0.14 TCGA-D3-A2JL-06 12 68720383 68720383 G A MDM1 Intron 0.22 TCGA-D3-A2JL-06 12 70949773 70949773 C T PTPRB Missense_Mutation p.E1624K 0.25 deleterious(0.05) possibly_damaging(0.457) TCGA-D3-A2JL-06 12 86198613 86198613 C T RASSF9 Missense_Mutation p.G392E 0.21 tolerated(0.36) benign(0.005) TCGA-D3-A2JL-06 12 94673364 94673364 C G PLXNC1 Missense_Mutation p.F1238L 0.17 tolerated(1) benign(0.072) TCGA-D3-A2JL-06 12 94673381 94673381 A G PLXNC1 Missense_Mutation p.K1244R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JL-06 13 101762990 101762990 G A NALCN Missense_Mutation p.L782F 0.60 tolerated(0.4) possibly_damaging(0.549) TCGA-D3-A2JL-06 13 110838777 110838777 C T COL4A1 Missense_Mutation p.G618R 0.17 probably_damaging(1) TCGA-D3-A2JL-06 13 114524980 114524980 G T GAS6 Silent p.L611L 0.50 TCGA-D3-A2JL-06 13 19755896 19755896 C T TUBA3C 5'UTR 0.14 TCGA-D3-A2JL-06 13 29041220 29041220 C T FLT1 Missense_Mutation p.E70K 0.29 tolerated(0.19) benign(0.068) TCGA-D3-A2JL-06 13 32363266 32363266 G A RXFP2 Missense_Mutation p.E361K 0.19 deleterious(0.03) benign(0.126) TCGA-D3-A2JL-06 13 46917568 46917568 G A KIAA0226L Silent p.I647I 0.17 TCGA-D3-A2JL-06 13 58208094 58208094 T C PCDH17 Missense_Mutation p.F472L 0.14 deleterious(0) probably_damaging(0.935) TCGA-D3-A2JL-06 13 95364222 95364222 G A SOX21 Nonsense_Mutation p.Q28* 0.24 TCGA-D3-A2JL-06 13 95858979 95858979 G A ABCC4 Missense_Mutation p.S323L 0.23 tolerated(1) benign(0.029) TCGA-D3-A2JL-06 13 98652899 98652899 C T IPO5 Missense_Mutation p.P388S 0.21 tolerated(0.46) benign(0.009) TCGA-D3-A2JL-06 14 101493486 101493486 G A MIR329-2 RNA 0.41 TCGA-D3-A2JL-06 14 20389533 20389533 C T OR4K5 Silent p.F256F 0.27 TCGA-D3-A2JL-06 14 21852187 21852187 G A SUPT16H 5'UTR 0.50 TCGA-D3-A2JL-06 14 22356678 22356678 G A TRAV12-2 Silent p.V112V 0.29 TCGA-D3-A2JL-06 14 24842431 24842431 G A NFATC4 Missense_Mutation p.D535N 0.41 deleterious(0) possibly_damaging(0.851) TCGA-D3-A2JL-06 14 39703424 39703424 G A MIA2 Missense_Mutation p.E36K 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.23 TCGA-D3-A2JL-06 14 63473091 63473091 C T KCNH5 Silent p.K99K 0.29 TCGA-D3-A2JL-06 14 64906890 64906890 C T MTHFD1 Missense_Mutation p.A574V 0.35 deleterious(0) possibly_damaging(0.69) TCGA-D3-A2JL-06 14 70442529 70442529 C T SMOC1 Missense_Mutation p.S159L 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-D3-A2JL-06 14 70713603 70713603 C T ADAM21P1 RNA 0.29 TCGA-D3-A2JL-06 14 73404716 73404716 A T DCAF4 Missense_Mutation p.R10S 0.32 tolerated(0.11) benign(0.004) TCGA-D3-A2JL-06 14 73404717 73404717 C T DCAF4 Nonsense_Mutation p.R11* 0.32 TCGA-D3-A2JL-06 14 73581037 73581037 C T RBM25 Missense_Mutation p.A812V 0.25 possibly_damaging(0.787) TCGA-D3-A2JL-06 14 75078537 75078537 C T LTBP2 Silent p.R37R 0.28 TCGA-D3-A2JL-06 14 77951247 77951247 C T ISM2 Missense_Mutation p.D53N 0.33 tolerated_low_confidence(0.58) probably_damaging(0.956) TCGA-D3-A2JL-06 14 88654351 88654351 C T KCNK10 Missense_Mutation p.G324E 0.40 deleterious(0) probably_damaging(0.977) TCGA-D3-A2JL-06 14 93151488 93151488 C T RIN3 Missense_Mutation p.S875F 0.25 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JL-06 14 93652793 93652793 C T RP11-371E8.4 Missense_Mutation p.S58F 0.26 tolerated(0.07) benign(0.002) TCGA-D3-A2JL-06 14 96949417 96949417 G A AK7 Missense_Mutation p.G612D 0.32 deleterious(0.03) probably_damaging(1) TCGA-D3-A2JL-06 14 96953373 96953373 G A AK7 Missense_Mutation p.E705K 0.29 deleterious(0.02) benign(0.311) TCGA-D3-A2JL-06 15 100332264 100332264 C T AC090825.1 5'Flank 0.18 TCGA-D3-A2JL-06 15 101434141 101434141 C T ALDH1A3 Intron 0.41 TCGA-D3-A2JL-06 15 25304718 25304718 C T SNORD116-3 3'Flank 0.17 TCGA-D3-A2JL-06 15 25342814 25342814 C T SNORD116-25 RNA 0.19 TCGA-D3-A2JL-06 15 34542930 34542930 C T SLC12A6 Missense_Mutation p.G498D 0.26 deleterious(0) possibly_damaging(0.521) TCGA-D3-A2JL-06 15 35084474 35084474 C T ACTC1 Missense_Mutation p.E209K 0.37 deleterious_low_confidence(0.01) benign(0.43) TCGA-D3-A2JL-06 15 42145866 42145866 G A SPTBN5 Silent p.T3298T 0.15 TCGA-D3-A2JL-06 15 44107265 44107265 G A MFAP1 Nonsense_Mutation p.R103* 0.29 TCGA-D3-A2JL-06 15 50733667 50733667 A T USP8 Nonsense_Mutation p.R76* 0.29 TCGA-D3-A2JL-06 15 70389158 70389158 C T TLE3 5'UTR 0.41 TCGA-D3-A2JL-06 15 71305224 71305224 C T LRRC49 Missense_Mutation p.R564C 0.34 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JL-06 15 75949648 75949648 G A SNX33 3'UTR 0.21 TCGA-D3-A2JL-06 15 83808016 83808016 T C HDGFRP3 3'UTR 0.24 TCGA-D3-A2JL-06 15 85438173 85438173 C T SLC28A1 Missense_Mutation p.L94F 0.24 tolerated(0.35) benign(0) TCGA-D3-A2JL-06 15 86259042 86259042 C T AKAP13 Missense_Mutation p.R1879W 0.20 tolerated(0.2) benign(0.3) TCGA-D3-A2JL-06 15 86940602 86940602 C T AGBL1 Missense_Mutation p.R748C 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 15 97326971 97326971 C A SPATA8 Missense_Mutation p.P29H 0.42 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-D3-A2JL-06 15 97328286 97328286 C T SPATA8 Missense_Mutation p.S86F 0.25 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-D3-A2JL-06 16 11369729 11369729 C T PRM2 3'UTR 0.12 TCGA-D3-A2JL-06 16 11444541 11444541 C T RMI2 Missense_Mutation p.P113L 0.27 tolerated(0.07) possibly_damaging(0.549) TCGA-D3-A2JL-06 16 1144728 1144728 G A C1QTNF8 Silent p.I65I 0.51 TCGA-D3-A2JL-06 16 15609187 15609187 G A RP11-1021N1.1 Silent p.A112A 0.36 TCGA-D3-A2JL-06 16 2305647 2305647 G A RNPS1 Missense_Mutation p.P253S 0.37 tolerated(0.08) unknown(0) TCGA-D3-A2JL-06 16 23702489 23702489 C T ERN2 Silent p.G891G 0.28 TCGA-D3-A2JL-06 16 24581764 24581764 C T RBBP6 Silent p.V1251V 0.23 TCGA-D3-A2JL-06 16 29107453 29107453 G A RRN3P2 Intron 0.15 TCGA-D3-A2JL-06 16 3076282 3076282 C T THOC6 Missense_Mutation p.P119S 0.13 tolerated(0.06) possibly_damaging(0.902) TCGA-D3-A2JL-06 16 56436943 56436943 G A AMFR Missense_Mutation p.R310C 0.37 deleterious(0) possibly_damaging(0.618) TCGA-D3-A2JL-06 16 61854894 61854894 C T CDH8 Missense_Mutation p.G320E 0.44 tolerated(0.09) benign(0.007) TCGA-D3-A2JL-06 16 68056616 68056616 G A DDX28 Missense_Mutation p.R164C 0.28 deleterious(0) possibly_damaging(0.906) TCGA-D3-A2JL-06 16 9858416 9858416 C T GRIN2A Silent p.T995T 0.26 TCGA-D3-A2JL-06 17 17797059 17797059 G A TOM1L2 Silent p.F94F 0.15 TCGA-D3-A2JL-06 17 2603696 2603696 G A CLUH Nonsense_Mutation p.R378* 0.16 TCGA-D3-A2JL-06 17 26818751 26818751 C A SLC13A2 Silent p.L302L 0.16 TCGA-D3-A2JL-06 17 27899038 27899038 C T TP53I13 Missense_Mutation p.P159L 0.54 tolerated(0.49) benign(0.005) TCGA-D3-A2JL-06 17 3301419 3301419 C T OR1E1 Missense_Mutation p.D96N 0.36 deleterious(0.01) benign(0.001) TCGA-D3-A2JL-06 17 36708983 36708983 C T SRCIN1 Silent p.G770G 0.57 TCGA-D3-A2JL-06 17 38640807 38640807 G A TNS4 Missense_Mutation p.S477F 0.57 deleterious(0) probably_damaging(0.966) TCGA-D3-A2JL-06 17 39036116 39036116 C T KRT20 Silent p.L289L 0.47 TCGA-D3-A2JL-06 17 39537356 39537356 C T KRT34 Silent p.V222V 0.12 TCGA-D3-A2JL-06 17 3954306 3954306 G A ZZEF1 Missense_Mutation p.P1878S 0.12 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JL-06 17 41004022 41004022 G A AOC3 Missense_Mutation p.G221E 0.13 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JL-06 17 41020841 41020841 G A AOC4P RNA 0.47 TCGA-D3-A2JL-06 17 42156583 42156583 C T HDAC5 Missense_Mutation p.E1004K 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 17 43332772 43332772 G A SPATA32 Silent p.P259P 0.50 TCGA-D3-A2JL-06 17 45913763 45913763 T C LRRC46 Missense_Mutation p.W173R 0.57 tolerated(0.24) benign(0.013) TCGA-D3-A2JL-06 17 46103691 46103691 G A COPZ2 3'UTR 0.73 TCGA-D3-A2JL-06 17 46846367 46846367 C T TTLL6 Missense_Mutation p.G887E 0.39 tolerated_low_confidence(0.1) benign(0.243) TCGA-D3-A2JL-06 17 47684678 47684678 G A SPOP Silent p.F257F 0.47 TCGA-D3-A2JL-06 17 58147098 58147098 C T HEATR6 Missense_Mutation p.E305K 0.14 tolerated(0.1) benign(0.106) TCGA-D3-A2JL-06 17 59482937 59482937 G A TBX2 Missense_Mutation p.G476R 0.19 deleterious(0) possibly_damaging(0.871) TCGA-D3-A2JL-06 17 62020202 62020202 G A SCN4A Silent p.V1424V 0.17 TCGA-D3-A2JL-06 17 62892939 62892939 G A LRRC37A3 Missense_Mutation p.S146L 0.07 deleterious(0.02) benign(0.124) TCGA-D3-A2JL-06 17 6387073 6387073 C T PITPNM3 Splice_Site p.X118_splice 0.54 TCGA-D3-A2JL-06 17 6554934 6554934 C T MED31 5'UTR 0.31 TCGA-D3-A2JL-06 17 75398448 75398448 C T SEPT9 Silent p.S128S 0.62 TCGA-D3-A2JL-06 17 75398449 75398449 C T SEPT9 Missense_Mutation p.R129W 0.63 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-D3-A2JL-06 17 79428154 79428154 C T RP11-1055B8.7 Silent p.A2155A 0.19 TCGA-D3-A2JL-06 17 81052056 81052056 C T METRNL Silent p.A224A 0.51 TCGA-D3-A2JL-06 17 8370372 8370372 C T NDEL1 3'UTR 0.12 TCGA-D3-A2JL-06 17 9632267 9632267 C T USP43 Missense_Mutation p.S1111F 0.15 deleterious(0.03) benign(0.111) TCGA-D3-A2JL-06 18 19996016 19996016 C T CTAGE1 Missense_Mutation p.A587T 0.34 tolerated(0.21) benign(0.031) TCGA-D3-A2JL-06 18 23772441 23772441 G A PSMA8 3'UTR 0.38 TCGA-D3-A2JL-06 18 28605779 28605779 C T DSC3 Missense_Mutation p.G193R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 18 46146061 46146061 C T CTIF Missense_Mutation p.A42V 0.33 tolerated_low_confidence(0.07) benign(0.003) TCGA-D3-A2JL-06 19 11406906 11406906 G A TSPAN16 5'UTR 0.17 TCGA-D3-A2JL-06 19 12800923 12800923 G A FBXW9 Silent p.A295A 0.29 TCGA-D3-A2JL-06 19 12800924 12800924 G A FBXW9 Missense_Mutation p.A295V 0.28 tolerated(0.24) benign(0.019) TCGA-D3-A2JL-06 19 15918635 15918635 G A OR10H1 Silent p.I71I 0.57 TCGA-D3-A2JL-06 19 1827447 1827447 C T REXO1 Silent p.G447G 0.25 TCGA-D3-A2JL-06 19 19162882 19162882 G A ARMC6 Nonsense_Mutation p.W244* 0.12 TCGA-D3-A2JL-06 19 19162883 19162883 G A ARMC6 Nonsense_Mutation p.W244* 0.12 TCGA-D3-A2JL-06 19 19339082 19339082 C T NCAN Missense_Mutation p.P885S 0.18 tolerated(0.43) benign(0) TCGA-D3-A2JL-06 19 2252666 2252666 C T JSRP1 Missense_Mutation p.G220R 0.30 tolerated(0.19) probably_damaging(0.991) TCGA-D3-A2JL-06 19 36236335 36236335 C T PSENEN 5'UTR 0.12 TCGA-D3-A2JL-06 19 40421209 40421209 C T FCGBP Silent p.R904R 0.17 TCGA-D3-A2JL-06 19 40743886 40743886 C G AKT2 Missense_Mutation p.R274P 0.34 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JL-06 19 41450752 41450752 C T AC092071.1 5'Flank 0.14 TCGA-D3-A2JL-06 19 41450753 41450753 C T AC092071.1 5'Flank 0.14 TCGA-D3-A2JL-06 19 43680036 43680036 G A PSG5 Missense_Mutation p.T232I 0.23 tolerated(0.07) benign(0.17) TCGA-D3-A2JL-06 19 43979546 43979546 A G PHLDB3 3'UTR 0.39 TCGA-D3-A2JL-06 19 4511995 4511995 G A PLIN4 Silent p.I645I 0.34 TCGA-D3-A2JL-06 19 4523746 4523746 C G PLIN5 Missense_Mutation p.V396L 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2JL-06 19 4523747 4523747 C T PLIN5 Silent p.L395L 0.28 TCGA-D3-A2JL-06 19 45317959 45317959 G A BCAM Silent p.E340E 0.33 TCGA-D3-A2JL-06 19 49344564 49344564 G A PLEKHA4 Missense_Mutation p.P583S 0.24 deleterious(0.05) benign(0.011) TCGA-D3-A2JL-06 19 50105142 50105142 C T PRR12 Silent p.F1580F 0.14 TCGA-D3-A2JL-06 19 50200690 50200690 G A CPT1C Silent p.L83L 0.17 TCGA-D3-A2JL-06 19 51671524 51671524 C T CTD-3187F8.14 Intron 0.30 TCGA-D3-A2JL-06 19 51920407 51920407 A G SIGLEC10 Missense_Mutation p.F117S 0.30 deleterious(0.02) benign(0.142) TCGA-D3-A2JL-06 19 5212148 5212148 C T PTPRS Missense_Mutation p.R1628H 0.18 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JL-06 19 52817502 52817502 T C ZNF480 Silent p.L57L 0.24 TCGA-D3-A2JL-06 19 52869869 52869869 T C ZNF610 Missense_Mutation p.L413S 0.27 tolerated(1) benign(0.003) TCGA-D3-A2JL-06 19 55450542 55450542 C T NLRP7 Missense_Mutation p.E549K 0.18 tolerated(0.15) benign(0.443) TCGA-D3-A2JL-06 19 55707899 55707899 C T PTPRH Missense_Mutation p.E750K 0.27 probably_damaging(0.951) TCGA-D3-A2JL-06 19 56321664 56321664 G A NLRP11 Silent p.F104F 0.23 TCGA-D3-A2JL-06 19 57089571 57089571 C T ZNF470 Missense_Mutation p.P592S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JL-06 19 57640991 57640991 A C USP29 Missense_Mutation p.Q316H 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A2JL-06 19 57666693 57666693 C T DUXA Silent p.R162R 0.17 TCGA-D3-A2JL-06 19 5867530 5867530 C T FUT5 Silent p.A69A 0.21 TCGA-D3-A2JL-06 19 7705881 7705881 G A STXBP2 Missense_Mutation p.E141K 0.12 deleterious(0) probably_damaging(0.962) TCGA-D3-A2JL-06 19 829624 829624 C T AZU1 Missense_Mutation p.S93F 0.18 deleterious(0) possibly_damaging(0.888) TCGA-D3-A2JL-06 19 8665993 8665993 C G ADAMTS10 Missense_Mutation p.R210P 0.26 deleterious(0.03) possibly_damaging(0.63) TCGA-D3-A2JL-06 19 8841477 8841477 C T OR2Z1 Silent p.S29S 0.40 TCGA-D3-A2JL-06 19 9072100 9072100 C T MUC16 Missense_Mutation p.E5116K 0.12 unknown(0) TCGA-D3-A2JL-06 19 9073985 9073985 G A MUC16 Silent p.T4487T 0.46 TCGA-D3-A2JL-06 19 9325039 9325039 G A OR7D4 Missense_Mutation p.H159Y 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A2JL-06 1 104114369 104114369 C T AMY2B Missense_Mutation p.P49S 0.10 deleterious(0) probably_damaging(0.92) TCGA-D3-A2JL-06 1 11199666 11199666 G A MTOR Missense_Mutation p.S1641F 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JL-06 1 115258748 115258748 C G NRAS Missense_Mutation p.G12R 0.23 deleterious(0.03) probably_damaging(0.926) TCGA-D3-A2JL-06 1 115401177 115401177 G A SYCP1 Missense_Mutation p.G101R 0.07 deleterious(0.02) benign(0.008) TCGA-D3-A2JL-06 1 117618345 117618345 C G TTF2 Missense_Mutation p.T380R 0.15 tolerated(0.24) benign(0) TCGA-D3-A2JL-06 1 118499811 118499811 C T WDR3 Silent p.F858F 0.14 TCGA-D3-A2JL-06 1 119575597 119575597 T C WARS2 Silent p.A340A 0.24 TCGA-D3-A2JL-06 1 1203265 1203265 G A UBE2J2 Silent p.P36P 0.32 TCGA-D3-A2JL-06 1 1203266 1203266 G A UBE2J2 Missense_Mutation p.P36L 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 1 152058306 152058306 C T TCHHL1 Missense_Mutation p.D618N 0.21 tolerated(0.15) benign(0.098) TCGA-D3-A2JL-06 1 152279024 152279024 G A FLG Nonsense_Mutation p.Q2780* 0.15 TCGA-D3-A2JL-06 1 152285304 152285304 C T FLG Silent p.Q686Q 0.24 TCGA-D3-A2JL-06 1 152285890 152285890 C T FLG Missense_Mutation p.G491E 0.24 probably_damaging(0.978) TCGA-D3-A2JL-06 1 155935153 155935153 G A ARHGEF2 Missense_Mutation p.S174F 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JL-06 1 156642965 156642965 G A NES Missense_Mutation p.P339S 0.20 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JL-06 1 160321843 160321843 G A NCSTN Splice_Site p.X282_splice 0.31 TCGA-D3-A2JL-06 1 179520438 179520438 G A NPHS2 Missense_Mutation p.P341L 0.29 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JL-06 1 196887484 196887484 C T CFHR4 Missense_Mutation p.S561L 0.33 tolerated(0.06) benign(0.432) TCGA-D3-A2JL-06 1 202172946 202172946 G A LGR6 Intron 0.32 TCGA-D3-A2JL-06 1 205779249 205779249 G A SLC41A1 Silent p.L107L 0.42 TCGA-D3-A2JL-06 1 2103786 2103786 C T PRKCZ Missense_Mutation p.P415L 0.36 tolerated(0.14) probably_damaging(0.999) TCGA-D3-A2JL-06 1 228487200 228487200 C T OBSCN Missense_Mutation p.T4484I 0.30 probably_damaging(0.999) TCGA-D3-A2JL-06 1 236720519 236720519 G A HEATR1 Silent p.P1777P 0.25 TCGA-D3-A2JL-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JL-06 1 248525516 248525516 G A OR2T4 Missense_Mutation p.E212K 0.49 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JL-06 1 248569723 248569723 C T OR2T1 Missense_Mutation p.S143F 0.41 deleterious(0) probably_damaging(0.95) TCGA-D3-A2JL-06 1 26360198 26360198 C T EXTL1 Silent p.A510A 0.33 TCGA-D3-A2JL-06 1 26691141 26691141 G A ZNF683 Missense_Mutation p.P299L 0.26 tolerated(0.08) possibly_damaging(0.804) TCGA-D3-A2JL-06 1 29475298 29475309 CTGCGACTGCGA - SRSF4 In_Frame_Del p.R369_S372del 0.28 TCGA-D3-A2JL-06 1 32673199 32673199 G A IQCC Missense_Mutation p.R386K 0.11 tolerated_low_confidence(1) benign(0.11) TCGA-D3-A2JL-06 1 33478702 33478702 G A AK2 3'UTR 0.16 TCGA-D3-A2JL-06 1 33478703 33478703 G A AK2 3'UTR 0.16 TCGA-D3-A2JL-06 1 43664180 43664180 G A WDR65 Missense_Mutation p.E431K 0.21 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JL-06 1 44436352 44436352 T C DPH2 Missense_Mutation p.F78L 0.29 deleterious(0.01) possibly_damaging(0.561) TCGA-D3-A2JL-06 1 78958726 78958726 C T PTGFR Missense_Mutation p.R100C 0.30 deleterious(0.04) possibly_damaging(0.809) TCGA-D3-A2JL-06 1 95616880 95616880 G A TMEM56 Splice_Site p.X102_splice 0.35 TCGA-D3-A2JL-06 20 2775247 2775247 G A CPXM1 Silent p.D633D 0.31 TCGA-D3-A2JL-06 20 30136824 30136824 C T HM13 Intron 0.16 TCGA-D3-A2JL-06 20 32369172 32369172 C T ZNF341 Silent p.F559F 0.35 TCGA-D3-A2JL-06 20 37547165 37547165 G A PPP1R16B Silent p.L520L 0.25 TCGA-D3-A2JL-06 20 43138550 43138550 G A SERINC3 Missense_Mutation p.P199S 0.48 tolerated(1) benign(0.034) TCGA-D3-A2JL-06 20 44108723 44108723 C T WFDC2 Missense_Mutation p.P122L 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 20 47601942 47601942 C T ARFGEF2 Intron 0.26 TCGA-D3-A2JL-06 20 48699408 48699408 G A UBE2V1 Missense_Mutation p.S137L 0.23 deleterious(0.01) benign(0.201) TCGA-D3-A2JL-06 20 49224937 49224937 C T FAM65C Silent p.E311E 0.44 TCGA-D3-A2JL-06 20 51872316 51872316 G A TSHZ2 Silent p.K773K 0.22 TCGA-D3-A2JL-06 20 55012333 55012333 T C CASS4 Silent p.G50G 0.43 TCGA-D3-A2JL-06 20 57269626 57269626 C A NPEPL1 Missense_Mutation p.P162Q 0.42 tolerated(0.06) benign(0.333) TCGA-D3-A2JL-06 20 5903925 5903925 G A CHGB Missense_Mutation p.E379K 0.24 deleterious(0.03) benign(0.284) TCGA-D3-A2JL-06 20 61511484 61511484 G A DIDO1 Missense_Mutation p.P1942S 0.23 probably_damaging(0.996) TCGA-D3-A2JL-06 20 61525513 61525513 G A DIDO1 Missense_Mutation p.P869L 0.18 benign(0.009) TCGA-D3-A2JL-06 20 61525514 61525514 G A DIDO1 Missense_Mutation p.P869S 0.18 benign(0.231) TCGA-D3-A2JL-06 21 38568329 38568329 T G TTC3 Missense_Mutation p.C1857W 0.10 deleterious(0.05) benign(0.02) TCGA-D3-A2JL-06 21 41414391 41414391 C T DSCAM Missense_Mutation p.E1865K 0.19 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JL-06 21 42720632 42720632 C T FAM3B Missense_Mutation p.S200F 0.31 deleterious(0.02) benign(0.424) TCGA-D3-A2JL-06 21 46078200 46078200 G A KRTAP12-3 3'UTR 0.28 TCGA-D3-A2JL-06 22 22677150 22677150 C T IGLV1-51 Missense_Mutation p.P60S 0.53 tolerated(0.05) benign(0.226) TCGA-D3-A2JL-06 22 25251323 25251323 G A SGSM1 Missense_Mutation p.E199K 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JL-06 22 39910382 39910382 G A MIEF1 3'UTR 0.63 TCGA-D3-A2JL-06 22 41660752 41660752 G A RANGAP1 Silent p.F132F 0.15 TCGA-D3-A2JL-06 22 50598106 50598106 G A MOV10L1 Splice_Site p.X1073_splice 0.23 TCGA-D3-A2JL-06 22 50598107 50598107 G A MOV10L1 Missense_Mutation p.V1073M 0.24 deleterious(0) probably_damaging(0.958) TCGA-D3-A2JL-06 2 1079206 1079206 G A SNTG2 Silent p.T25T 0.10 TCGA-D3-A2JL-06 2 110373044 110373044 C T SOWAHC Silent p.N326N 0.31 TCGA-D3-A2JL-06 2 113832237 113832237 C T IL1F10 Intron 0.34 TCGA-D3-A2JL-06 2 1161240 1161240 C T SNTG2 Silent p.L140L 0.30 TCGA-D3-A2JL-06 2 116594278 116594278 G A DPP10 Missense_Mutation p.G717D 0.30 tolerated(0.2) benign(0.271) TCGA-D3-A2JL-06 2 121554883 121554883 G A GLI2 5'UTR 0.26 TCGA-D3-A2JL-06 2 133539526 133539526 C T NCKAP5 Missense_Mutation p.E1620K 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JL-06 2 157182748 157182748 G A NR4A2 Missense_Mutation p.S485F 0.30 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JL-06 2 157183340 157183340 G A NR4A2 Silent p.I417I 0.26 TCGA-D3-A2JL-06 2 167162385 167162385 G A SCN9A Silent p.I171I 0.25 TCGA-D3-A2JL-06 2 170031750 170031750 G T LRP2 Missense_Mutation p.A3574D 0.18 possibly_damaging(0.47) TCGA-D3-A2JL-06 2 172966256 172966256 C T DLX2 Silent p.K173K 0.38 TCGA-D3-A2JL-06 2 179441655 179441655 C T TTN Missense_Mutation p.R23136K 0.10 TCGA-D3-A2JL-06 2 183099217 183099217 C T PDE1A Missense_Mutation p.R136Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JL-06 2 198265476 198265476 T C SF3B1 Missense_Mutation p.D894G 0.32 deleterious(0) probably_damaging(0.968) TCGA-D3-A2JL-06 2 207174295 207174295 G A ZDBF2 Silent p.Q1681Q 0.17 TCGA-D3-A2JL-06 2 215890504 215890504 C T ABCA12 Splice_Site p.X394_splice 0.33 TCGA-D3-A2JL-06 2 219134843 219134843 C T AAMP 5'UTR 0.19 TCGA-D3-A2JL-06 2 219614105 219614105 C T TTLL4 Silent p.S910S 0.33 TCGA-D3-A2JL-06 2 220354160 220354160 T G SPEG Missense_Mutation p.L2807R 0.10 benign(0.077) TCGA-D3-A2JL-06 2 228102815 228102815 C T COL4A3 Intron 0.30 TCGA-D3-A2JL-06 2 238303547 238303547 G C COL6A3 Missense_Mutation p.T131S 0.09 benign(0.402) TCGA-D3-A2JL-06 2 24985616 24985618 CTT - NCOA1 In_Frame_Del p.L1377del 0.31 TCGA-D3-A2JL-06 2 25459802 25459802 G A DNMT3A Intron 0.36 TCGA-D3-A2JL-06 2 27804235 27804235 C T C2orf16 Missense_Mutation p.S1599F 0.12 tolerated(0.12) unknown(0) TCGA-D3-A2JL-06 2 28865849 28865849 C T PLB1 Silent p.I1433I 0.27 TCGA-D3-A2JL-06 2 29259496 29259496 C T FAM179A Silent p.L836L 0.24 TCGA-D3-A2JL-06 2 46574202 46574202 G A EPAS1 Missense_Mutation p.V73I 0.17 tolerated(0.24) benign(0.027) TCGA-D3-A2JL-06 2 60773237 60773237 G T BCL11A Missense_Mutation p.P85H 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A2JL-06 2 65492226 65492226 C T ACTR2 Missense_Mutation p.P316S 0.31 deleterious(0.03) benign(0.055) TCGA-D3-A2JL-06 2 68384781 68384781 G A WDR92 5'Flank 0.39 TCGA-D3-A2JL-06 2 69172586 69172586 G A GKN2 Intron 0.34 TCGA-D3-A2JL-06 2 73836754 73836754 C T ALMS1 3'UTR 0.25 TCGA-D3-A2JL-06 2 86067165 86067165 G A ST3GAL5 3'UTR 0.26 TCGA-D3-A2JL-06 2 97007508 97007508 C T NCAPH Missense_Mutation p.P50S 0.29 deleterious(0.03) possibly_damaging(0.687) TCGA-D3-A2JL-06 3 108723946 108723946 C T MORC1 Missense_Mutation p.E662K 0.43 tolerated(0.11) benign(0.219) TCGA-D3-A2JL-06 3 11301470 11301470 G A HRH1 Silent p.K249K 0.25 TCGA-D3-A2JL-06 3 124420920 124420920 G A KALRN Missense_Mutation p.E981K 0.26 tolerated(0.15) benign(0.11) TCGA-D3-A2JL-06 3 129293200 129293200 G A PLXND1 Silent p.C888C 0.33 TCGA-D3-A2JL-06 3 133653464 133653464 A G SLCO2A1 3'UTR 0.36 TCGA-D3-A2JL-06 3 134898763 134898763 C T EPHB1 Silent p.V607V 0.34 TCGA-D3-A2JL-06 3 138170908 138170908 G A ESYT3 Missense_Mutation p.E116K 0.17 deleterious(0) possibly_damaging(0.804) TCGA-D3-A2JL-06 3 142769799 142769799 C T U2SURP Nonsense_Mutation p.Q855* 0.17 TCGA-D3-A2JL-06 3 179287645 179287645 C T ACTL6A Missense_Mutation p.S20F 0.40 deleterious(0) probably_damaging(0.953) TCGA-D3-A2JL-06 3 184009945 184009945 C T ECE2 Silent p.S857S 0.16 TCGA-D3-A2JL-06 3 184024179 184024179 T A PSMD2 Missense_Mutation p.C616S 0.33 deleterious(0) probably_damaging(0.911) TCGA-D3-A2JL-06 3 194362718 194362718 G A LSG1 3'UTR 0.40 TCGA-D3-A2JL-06 3 38167171 38167171 G A ACAA1 Missense_Mutation p.P362S 0.29 tolerated(0.09) possibly_damaging(0.453) TCGA-D3-A2JL-06 3 407753 407753 G A CHL1 Missense_Mutation p.S569N 0.27 tolerated(0.23) benign(0.005) TCGA-D3-A2JL-06 3 41860970 41860970 C G ULK4 Missense_Mutation p.C598S 0.39 tolerated(0.45) benign(0.002) TCGA-D3-A2JL-06 3 45817435 45817435 C T SLC6A20 Missense_Mutation p.G134S 0.24 deleterious(0.02) benign(0.438) TCGA-D3-A2JL-06 3 52255864 52255864 A G TLR9 Missense_Mutation p.L977P 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JL-06 4 107845320 107845320 C T DKK2 Missense_Mutation p.E191K 0.26 tolerated(0.11) possibly_damaging(0.453) TCGA-D3-A2JL-06 4 126411726 126411726 C T FAT4 Silent p.I4583I 0.15 TCGA-D3-A2JL-06 4 134072858 134072858 G A PCDH10 Silent p.E521E 0.27 TCGA-D3-A2JL-06 4 146560228 146560228 G A MMAA Intron 0.23 TCGA-D3-A2JL-06 4 148827861 148827861 A - ARHGAP10 Frame_Shift_Del p.K370Rfs*42 0.11 TCGA-D3-A2JL-06 4 155720135 155720135 C T RBM46 Missense_Mutation p.A274V 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A2JL-06 4 158242727 158242727 T A GRIA2 Silent p.P286P 0.33 TCGA-D3-A2JL-06 4 188924832 188924832 A G ZFP42 Missense_Mutation p.N291D 0.29 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JL-06 4 22749597 22749597 G A GBA3 Missense_Mutation p.G322E 0.22 tolerated(0.45) benign(0.002) TCGA-D3-A2JL-06 4 3449240 3449240 C T HGFAC Silent p.S459S 0.29 TCGA-D3-A2JL-06 4 40440442 40440442 C T RBM47 Missense_Mutation p.G157R 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JL-06 4 42445687 42445687 G A ATP8A1 Silent p.F1006F 0.33 TCGA-D3-A2JL-06 4 5564588 5564588 A T EVC2 Nonsense_Mutation p.L1305* 0.28 TCGA-D3-A2JL-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 4 55976861 55976861 G A KDR Missense_Mutation p.P351S 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-D3-A2JL-06 4 65180469 65180469 C T TECRL Missense_Mutation p.E150K 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JL-06 4 70350966 70350966 C T UGT2B4 Missense_Mutation p.D424N 0.16 deleterious(0.04) possibly_damaging(0.615) TCGA-D3-A2JL-06 4 70599213 70599213 G A SULT1B1 Missense_Mutation p.S172F 0.35 deleterious(0) probably_damaging(0.944) TCGA-D3-A2JL-06 4 7062907 7062907 C T GRPEL1 Silent p.L112L 0.28 TCGA-D3-A2JL-06 4 74351594 74351594 G A AFM Missense_Mutation p.E96K 0.19 tolerated(0.06) benign(0.175) TCGA-D3-A2JL-06 4 74702991 74702991 A T CXCL6 Missense_Mutation p.K105I 0.24 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JL-06 5 1081726 1081726 G A SLC12A7 Silent p.T421T 0.29 TCGA-D3-A2JL-06 5 140262123 140262123 C T PCDHA13 Silent p.I90I 0.35 TCGA-D3-A2JL-06 5 140552780 140552780 T - PCDHB7 Frame_Shift_Del p.W122Gfs*13 0.26 TCGA-D3-A2JL-06 5 140750352 140750352 C T PCDHGB3 Missense_Mutation p.P131S 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 5 145979880 145979880 C T PPP2R2B Missense_Mutation p.E315K 0.31 deleterious(0) possibly_damaging(0.462) TCGA-D3-A2JL-06 5 147549340 147549340 G A SPINK14 Silent p.L15L 0.67 TCGA-D3-A2JL-06 5 147549342 147549342 T A SPINK14 Missense_Mutation p.I16K 0.60 deleterious(0.02) benign(0.037) TCGA-D3-A2JL-06 5 156589596 156589596 G A FAM71B Silent p.I560I 0.45 TCGA-D3-A2JL-06 5 179260650 179260650 G A SQSTM1 Missense_Mutation p.E345K 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A2JL-06 5 180335889 180335889 C T BTNL8 Missense_Mutation p.S118F 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A2JL-06 5 24488092 24488092 C T CDH10 Missense_Mutation p.E683K 0.27 tolerated(0.39) benign(0.025) TCGA-D3-A2JL-06 5 31305298 31305298 G A CDH6 Silent p.K339K 0.42 TCGA-D3-A2JL-06 5 44809349 44809349 G A MRPS30 Silent p.P95P 0.11 TCGA-D3-A2JL-06 5 70793195 70793195 C T BDP1 Missense_Mutation p.S633L 0.38 deleterious(0.04) benign(0.076) TCGA-D3-A2JL-06 5 74064802 74064802 G A NSA2 Missense_Mutation p.R17H 0.08 tolerated(0.15) benign(0.001) TCGA-D3-A2JL-06 6 121481215 121481215 G A TBC1D32 Missense_Mutation p.S905L 0.19 deleterious(0) possibly_damaging(0.782) TCGA-D3-A2JL-06 6 128150713 128150713 G A THEMIS Missense_Mutation p.S206L 0.45 tolerated(0.74) benign(0.023) TCGA-D3-A2JL-06 6 129649516 129649516 G A LAMA2 Missense_Mutation p.G1424R 0.27 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JL-06 6 143092937 143092937 G A HIVEP2 Missense_Mutation p.S980F 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JL-06 6 15523240 15523240 G A DTNBP1 Missense_Mutation p.A341V 0.25 tolerated_low_confidence(0.1) benign(0.244) TCGA-D3-A2JL-06 6 165715662 165715662 T A C6orf118 Missense_Mutation p.K50I 0.48 deleterious(0) possibly_damaging(0.822) TCGA-D3-A2JL-06 6 25862090 25862090 G A SLC17A3 Silent p.I157I 0.44 TCGA-D3-A2JL-06 6 27419241 27419241 G A ZNF184 Silent p.N699N 0.28 TCGA-D3-A2JL-06 6 31557860 31557860 G A NCR3 Silent p.T29T 0.28 TCGA-D3-A2JL-06 6 31779099 31779099 C T HSPA1L Silent p.G217G 0.15 TCGA-D3-A2JL-06 6 32046849 32046849 C T RNA5SP206 5'Flank 0.13 TCGA-D3-A2JL-06 6 32261009 32261009 G A C6orf10 Silent p.L481L 0.21 TCGA-D3-A2JL-06 6 38781865 38781865 C T DNAH8 Missense_Mutation p.S881F 0.14 benign(0.24) TCGA-D3-A2JL-06 6 41304028 41304028 G A NCR2 Missense_Mutation p.D86N 0.36 tolerated(0.97) benign(0.037) TCGA-D3-A2JL-06 6 42025228 42025228 C T TAF8 Missense_Mutation p.P156S 0.21 deleterious(0.02) probably_damaging(0.936) TCGA-D3-A2JL-06 6 42141297 42141297 G A GUCA1A 5'UTR 0.38 TCGA-D3-A2JL-06 6 42585058 42585058 C T UBR2 Silent p.F421F 0.28 TCGA-D3-A2JL-06 6 43400805 43400805 C T ABCC10 Silent p.L363L 0.36 TCGA-D3-A2JL-06 6 43592393 43592393 G A GTPBP2 Silent p.I318I 0.12 TCGA-D3-A2JL-06 6 73905049 73905049 G A KCNQ5 Missense_Mutation p.R923K 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-D3-A2JL-06 7 100350192 100350192 C A ZAN Missense_Mutation p.P822T 0.09 unknown(0) TCGA-D3-A2JL-06 7 123594288 123594288 C T SPAM1 Missense_Mutation p.P222S 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 7 134896313 134896313 G A WDR91 5'Flank 0.27 TCGA-D3-A2JL-06 7 138583706 138583706 G A KIAA1549 Missense_Mutation p.A1281V 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 7 142650956 142650956 G A KEL Missense_Mutation p.H338Y 0.38 tolerated(0.25) probably_damaging(0.974) TCGA-D3-A2JL-06 7 148975604 148975604 C T ZNF783 Missense_Mutation p.A263V 0.25 tolerated(0.5) benign(0) TCGA-D3-A2JL-06 7 148978696 148978696 C T ZNF783 Silent p.I301I 0.19 TCGA-D3-A2JL-06 7 150730720 150730720 C T ABCB8 Missense_Mutation p.L42F 0.32 deleterious_low_confidence(0.05) benign(0.031) TCGA-D3-A2JL-06 7 155255095 155255095 A G EN2 Missense_Mutation p.N239D 0.09 tolerated(0.29) benign(0.014) TCGA-D3-A2JL-06 7 155255099 155255099 C T EN2 Missense_Mutation p.P240L 0.10 tolerated(0.06) benign(0.015) TCGA-D3-A2JL-06 7 4841434 4841434 C T RADIL Missense_Mutation p.D898N 0.41 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JL-06 7 4841435 4841435 C T RADIL Silent p.T897T 0.43 TCGA-D3-A2JL-06 7 5427351 5427351 G A TNRC18 Missense_Mutation p.P702S 0.17 benign(0.119) TCGA-D3-A2JL-06 7 5521422 5521422 G A FBXL18 Missense_Mutation p.P714L 0.33 tolerated(0.08) probably_damaging(0.96) TCGA-D3-A2JL-06 7 70800662 70800662 C T WBSCR17 Missense_Mutation p.S122L 0.24 deleterious(0.04) benign(0.006) TCGA-D3-A2JL-06 7 74211885 74211885 G A GTF2IRD2 Missense_Mutation p.H656Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JL-06 7 76144448 76144448 C T UPK3B Silent p.P281P 0.46 TCGA-D3-A2JL-06 7 87835758 87835758 G A SRI 3'UTR 0.27 TCGA-D3-A2JL-06 7 91842565 91842565 G A KRIT1 Missense_Mutation p.P657S 0.08 tolerated(0.54) benign(0.003) TCGA-D3-A2JL-06 7 92730503 92730503 G A SAMD9 3'UTR 0.37 TCGA-D3-A2JL-06 7 97822756 97822756 C T LMTK2 Silent p.S993S 0.34 TCGA-D3-A2JL-06 8 110509266 110509266 G C PKHD1L1 Missense_Mutation p.W3482C 0.22 deleterious(0) probably_damaging(0.99) TCGA-D3-A2JL-06 8 118184820 118184820 C T SLC30A8 Missense_Mutation p.A337V 0.21 tolerated(0.44) benign(0.02) TCGA-D3-A2JL-06 8 124518738 124518738 C T FBXO32 Missense_Mutation p.G243E 0.40 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JL-06 8 139833559 139833559 C T COL22A1 Silent p.R355R 0.24 TCGA-D3-A2JL-06 8 142229076 142229076 G A SLC45A4 Silent p.T170T 0.13 TCGA-D3-A2JL-06 8 142229077 142229077 G A SLC45A4 Missense_Mutation p.T170I 0.13 deleterious(0) probably_damaging(0.936) TCGA-D3-A2JL-06 8 144801635 144801635 C T MAPK15 Missense_Mutation p.P235L 0.22 deleterious(0.04) possibly_damaging(0.452) TCGA-D3-A2JL-06 8 144993494 144993494 T C PLEC Missense_Mutation p.N3636D 0.28 possibly_damaging(0.796) TCGA-D3-A2JL-06 8 144995804 144995804 G A PLEC Silent p.L2866L 0.27 TCGA-D3-A2JL-06 8 144995805 144995805 G A PLEC Silent p.I2865I 0.27 TCGA-D3-A2JL-06 8 145659413 145659413 G T TONSL Missense_Mutation p.P1112H 0.20 tolerated(0.56) probably_damaging(0.909) TCGA-D3-A2JL-06 8 145773187 145773187 G A ARHGAP39 Missense_Mutation p.S428F 0.19 deleterious(0) possibly_damaging(0.771) TCGA-D3-A2JL-06 8 195562 195562 C T ZNF596 Nonsense_Mutation p.R239* 0.21 TCGA-D3-A2JL-06 8 38385986 38385987 - CC C8orf86 Frame_Shift_Ins p.V57Gfs*39 0.21 TCGA-D3-A2JL-06 8 39442147 39442147 C T ADAM18 Silent p.F2F 0.43 TCGA-D3-A2JL-06 8 41585483 41585483 C T ANK1 Silent p.Q123Q 0.36 TCGA-D3-A2JL-06 8 55537354 55537354 G A RP1 Silent p.K304K 0.08 TCGA-D3-A2JL-06 8 55541396 55541396 C T RP1 Missense_Mutation p.R1652C 0.36 deleterious(0.03) possibly_damaging(0.54) TCGA-D3-A2JL-06 8 56436558 56436558 G A XKR4 Silent p.V575V 0.40 TCGA-D3-A2JL-06 8 6914238 6914238 G A DEFA5 5'UTR 0.46 TCGA-D3-A2JL-06 8 72184096 72184096 T C EYA1 Missense_Mutation p.K288R 0.32 deleterious(0.05) possibly_damaging(0.798) TCGA-D3-A2JL-06 8 73849751 73849751 G A KCNB2 Missense_Mutation p.E721K 0.09 tolerated_low_confidence(0.23) benign(0.044) TCGA-D3-A2JL-06 8 77768164 77768164 G A ZFHX4 Missense_Mutation p.E3003K 0.33 benign(0.033) TCGA-D3-A2JL-06 8 77768230 77768230 C T ZFHX4 Missense_Mutation p.H3025Y 0.25 probably_damaging(0.98) TCGA-D3-A2JL-06 8 81733664 81733664 G A ZNF704 Missense_Mutation p.L56F 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JL-06 9 138376596 138376596 C T PPP1R26 Silent p.D80D 0.14 TCGA-D3-A2JL-06 9 34256461 34256461 G A KIF24 Silent p.L1048L 0.49 TCGA-D3-A2JL-06 9 35749253 35749253 G A RGP1 5'Flank 0.27 TCGA-D3-A2JL-06 9 86451956 86451956 G A KIF27 Missense_Mutation p.S1389F 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JL-06 9 95797848 95797848 C T FGD3 Missense_Mutation p.P719S 0.37 tolerated_low_confidence(0.1) benign(0.005) TCGA-D3-A2JL-06 X 102338596 102338596 C T NXF3 Missense_Mutation p.E126K 0.37 tolerated(1) benign(0.23) TCGA-D3-A2JL-06 X 106224175 106224175 C T MORC4 Missense_Mutation p.M294I 0.24 deleterious(0.02) benign(0.017) TCGA-D3-A2JL-06 X 11682527 11682527 G A ARHGAP6 Missense_Mutation p.S141F 0.25 tolerated_low_confidence(0.11) benign(0.049) TCGA-D3-A2JL-06 X 117033291 117033291 G A KLHL13 Silent p.I519I 0.24 TCGA-D3-A2JL-06 X 117749610 117749610 C T DOCK11 Silent p.H1076H 0.36 TCGA-D3-A2JL-06 X 118222375 118222375 C T KIAA1210 Missense_Mutation p.D940N 0.18 tolerated(0.52) benign(0.002) TCGA-D3-A2JL-06 X 119760874 119760874 C T C1GALT1C1 Missense_Mutation p.E50K 0.13 tolerated(0.11) benign(0.026) TCGA-D3-A2JL-06 X 128691357 128691357 C T OCRL Silent p.I98I 0.42 TCGA-D3-A2JL-06 X 130419794 130419794 C T IGSF1 Nonsense_Mutation p.W109* 0.36 TCGA-D3-A2JL-06 X 135427441 135427441 G A GPR112 Missense_Mutation p.E526K 0.33 tolerated(0.11) benign(0.14) TCGA-D3-A2JL-06 X 13757012 13757012 T C OFD1 Silent p.T120T 0.17 TCGA-D3-A2JL-06 X 140994657 140994657 C T MAGEC1 Silent p.S489S 0.29 TCGA-D3-A2JL-06 X 152914836 152914836 G A DUSP9 Missense_Mutation p.E175K 0.17 tolerated(0.18) benign(0.146) TCGA-D3-A2JL-06 X 153640430 153640430 G A TAZ Missense_Mutation p.M39I 0.14 deleterious(0.02) benign(0.01) TCGA-D3-A2JL-06 X 154124378 154124378 G A F8 Nonsense_Mutation p.R2135* 0.20 TCGA-D3-A2JL-06 X 16688706 16688706 G A CTPS2 Silent p.L396L 0.30 TCGA-D3-A2JL-06 X 17819465 17819465 G A RAI2 Silent p.S222S 0.19 TCGA-D3-A2JL-06 X 2825553 2825553 G A ARSD Missense_Mutation p.P514L 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JL-06 X 3242878 3242878 G A MXRA5 Missense_Mutation p.P283L 0.32 deleterious(0) probably_damaging(0.953) TCGA-D3-A2JL-06 X 51638416 51638416 A G MAGED1 Missense_Mutation p.N161D 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A2JL-06 X 64138969 64138969 C T ZC4H2 Missense_Mutation p.D172N 0.34 tolerated(0.46) benign(0.014) TCGA-D3-A2JL-06 X 70389544 70389544 G A NLGN3 Missense_Mutation p.G715E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JL-06 X 70389545 70389545 G A NLGN3 Silent p.G715G 0.18 TCGA-D3-A2JL-06 X 72434266 72434266 C T NAP1L2 Silent p.Q21Q 0.34 TCGA-D3-A2JL-06 X 75004478 75004478 C T MAGEE2 Missense_Mutation p.D137N 0.36 deleterious(0.03) benign(0.346) TCGA-D3-A2JL-06 X 77913863 77913863 G A ZCCHC5 Missense_Mutation p.R19W 0.13 deleterious_low_confidence(0) benign(0.153) TCGA-D3-A2JL-06 X 9863311 9863311 G A SHROOM2 Missense_Mutation p.D455N 0.19 tolerated(0.5) benign(0.004) TCGA-D3-A2JN-06 10 100015377 100015377 G A LOXL4 Silent p.S516S 0.47 TCGA-D3-A2JN-06 10 102222943 102222943 T C WNT8B Silent p.P6P 0.33 TCGA-D3-A2JN-06 10 104679596 104679596 C G CNNM2 Silent p.L453L 0.53 TCGA-D3-A2JN-06 10 1087205 1087205 C T IDI1 Silent p.A259A 0.44 TCGA-D3-A2JN-06 10 1087215 1087215 A G IDI1 Missense_Mutation p.I256T 0.47 tolerated(0.24) benign(0.246) TCGA-D3-A2JN-06 10 134161692 134161692 G A LRRC27 Nonsense_Mutation p.W253* 0.31 TCGA-D3-A2JN-06 10 135026355 135026355 G A KNDC1 Missense_Mutation p.E1458K 0.53 deleterious(0) possibly_damaging(0.837) TCGA-D3-A2JN-06 10 15573141 15573141 C T ITGA8 Missense_Mutation p.D964N 0.46 tolerated(0.25) benign(0.003) TCGA-D3-A2JN-06 10 48413970 48413970 G C GDF2 Missense_Mutation p.H300D 0.45 tolerated(0.63) benign(0) TCGA-D3-A2JN-06 10 48429199 48429199 C T GDF10 Silent p.E229E 0.40 TCGA-D3-A2JN-06 10 51584898 51584898 C T NCOA4 Nonsense_Mutation p.Q349* 0.51 TCGA-D3-A2JN-06 10 79565430 79565430 G A DLG5 Silent p.L1719L 0.46 TCGA-D3-A2JN-06 11 102589230 102589230 G A MMP8 Silent p.A233A 0.22 TCGA-D3-A2JN-06 11 102589231 102589231 G A MMP8 Missense_Mutation p.A233V 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 11 103908478 103908478 G A DDI1 Missense_Mutation p.E310K 0.08 tolerated(0.11) benign(0.149) TCGA-D3-A2JN-06 11 114453641 114453641 C T NXPE4 Missense_Mutation p.E67K 0.12 tolerated(0.08) benign(0.004) TCGA-D3-A2JN-06 11 117774799 117774799 G A TMPRSS13 Missense_Mutation p.L467F 0.29 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JN-06 11 128781415 128781415 G A KCNJ5 Missense_Mutation p.D83N 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 11 205627 205627 C T BET1L Missense_Mutation p.R51Q 0.17 tolerated(0.25) benign(0.015) TCGA-D3-A2JN-06 11 27016482 27016482 C T FIBIN Missense_Mutation p.L137F 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A2JN-06 11 551696 551696 C T LRRC56 Missense_Mutation p.S281F 0.29 tolerated(0.31) benign(0.01) TCGA-D3-A2JN-06 11 57982333 57982333 C T OR1S1 Silent p.L39L 0.09 TCGA-D3-A2JN-06 11 62065029 62065029 G A SCGB1D4 Missense_Mutation p.P53S 0.27 tolerated(0.22) probably_damaging(0.999) TCGA-D3-A2JN-06 11 64622932 64622932 G A EHD1 Silent p.L314L 0.13 TCGA-D3-A2JN-06 11 65396095 65396095 C T PCNXL3 Silent p.F1244F 0.20 TCGA-D3-A2JN-06 11 6891672 6891672 C G OR10A2 Silent p.S229S 0.33 TCGA-D3-A2JN-06 11 71277001 71277001 G A KRTAP5-10 Missense_Mutation p.G123D 0.13 unknown(0) TCGA-D3-A2JN-06 11 73997389 73997389 G A P4HA3 Missense_Mutation p.L273F 0.14 deleterious(0.04) possibly_damaging(0.477) TCGA-D3-A2JN-06 11 82643213 82643213 C T C11orf82 Missense_Mutation p.S278F 0.15 tolerated(0.2) possibly_damaging(0.813) TCGA-D3-A2JN-06 11 84245701 84245701 G A DLG2 Missense_Mutation p.P144L 0.33 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JN-06 12 10007020 10007020 G A CLEC2B Nonsense_Mutation p.R101* 0.26 TCGA-D3-A2JN-06 12 121442013 121442013 G A C12orf43 Silent p.A244A 0.24 TCGA-D3-A2JN-06 12 122720409 122720409 G A VPS33A Missense_Mutation p.P455L 0.35 tolerated(0.87) benign(0.003) TCGA-D3-A2JN-06 12 123900407 123900407 C T RILPL2 3'UTR 0.38 TCGA-D3-A2JN-06 12 124285925 124285925 G A DNAH10 Missense_Mutation p.E736K 0.31 benign(0.049) TCGA-D3-A2JN-06 12 124358152 124358152 C T DNAH10 Silent p.I2493I 0.18 TCGA-D3-A2JN-06 12 125834239 125834239 C T TMEM132B Silent p.P98P 0.24 TCGA-D3-A2JN-06 12 133197092 133197092 G A P2RX2 Missense_Mutation p.D233N 0.29 tolerated(0.38) benign(0.036) TCGA-D3-A2JN-06 12 16035620 16035620 G A STRAP 5'UTR 0.29 TCGA-D3-A2JN-06 12 16035621 16035621 G A STRAP 5'UTR 0.29 TCGA-D3-A2JN-06 12 27832436 27832436 G A PPFIBP1 Missense_Mutation p.E550K 0.23 tolerated(0.75) probably_damaging(0.983) TCGA-D3-A2JN-06 12 417100 417100 G A KDM5A Silent p.A1150A 0.29 TCGA-D3-A2JN-06 12 49110579 49110579 C T CCNT1 5'UTR 0.36 TCGA-D3-A2JN-06 12 53228034 53228034 G A KRT79 Missense_Mutation p.S4F 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.694) TCGA-D3-A2JN-06 12 55025612 55025612 C T LACRT Missense_Mutation p.E89K 0.24 deleterious_low_confidence(0.05) unknown(0) TCGA-D3-A2JN-06 12 55615123 55615123 C T OR10A7 Silent p.F105F 0.19 TCGA-D3-A2JN-06 12 55688116 55688116 C T OR6C6 Missense_Mutation p.D301N 0.24 tolerated_low_confidence(0.46) benign(0.003) TCGA-D3-A2JN-06 12 55820040 55820040 G A OR6C76 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0.01) benign(0.049) TCGA-D3-A2JN-06 12 55846227 55846227 C T OR6C2 Missense_Mutation p.P77L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D3-A2JN-06 12 55945442 55945442 C T OR6C4 Silent p.F144F 0.24 TCGA-D3-A2JN-06 12 56548872 56548872 T C MYL6B Missense_Mutation p.V79A 0.24 deleterious(0.05) probably_damaging(0.97) TCGA-D3-A2JN-06 12 57919821 57919821 C T MBD6 Missense_Mutation p.S357L 0.25 tolerated_low_confidence(0.15) unknown(0) TCGA-D3-A2JN-06 12 80633179 80633179 C T OTOGL Missense_Mutation p.P329S 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 12 80704414 80704414 T A OTOGL Silent p.I1110I 0.21 TCGA-D3-A2JN-06 12 80714336 80714336 C T OTOGL Nonsense_Mutation p.Q1304* 0.20 TCGA-D3-A2JN-06 12 85492217 85492217 C T LRRIQ1 Missense_Mutation p.P991L 0.20 tolerated(0.05) probably_damaging(1) TCGA-D3-A2JN-06 12 96379885 96379885 G A HAL Missense_Mutation p.R369W 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 13 101833343 101833343 C T NALCN Intron 0.28 TCGA-D3-A2JN-06 13 101833344 101833344 C T NALCN Intron 0.26 TCGA-D3-A2JN-06 13 19748260 19748260 C T TUBA3C Missense_Mutation p.G366R 0.23 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-D3-A2JN-06 13 22275367 22275367 C T FGF9 Silent p.F140F 0.24 TCGA-D3-A2JN-06 13 99907337 99907337 A G GPR18 Missense_Mutation p.Y264H 0.12 tolerated(0.13) probably_damaging(0.975) TCGA-D3-A2JN-06 14 101418202 101418202 G A SNORD114-2 RNA 0.37 TCGA-D3-A2JN-06 14 105612994 105612994 A C JAG2 Nonsense_Mutation p.Y849* 0.21 TCGA-D3-A2JN-06 14 20020012 20020012 G A POTEM Missense_Mutation p.P70L 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A2JN-06 14 20528638 20528638 G A OR4L1 Silent p.A145A 0.30 TCGA-D3-A2JN-06 14 64921458 64921458 C T MTHFD1 Silent p.P861P 0.39 TCGA-D3-A2JN-06 14 75052732 75052732 C T LTBP2 Missense_Mutation p.E219K 0.44 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JN-06 14 96792071 96792071 G A ATG2B Silent p.F784F 0.16 TCGA-D3-A2JN-06 15 102197160 102197160 C T TARSL2 Missense_Mutation p.R742Q 0.14 deleterious(0.02) possibly_damaging(0.675) TCGA-D3-A2JN-06 15 22382673 22382673 C T OR4N4 Silent p.A67A 0.13 TCGA-D3-A2JN-06 15 22473164 22473164 G A IGHV4OR15-8 Missense_Mutation p.T36I 0.11 deleterious(0.03) possibly_damaging(0.701) TCGA-D3-A2JN-06 15 22833544 22833544 C G TUBGCP5 Missense_Mutation p.P7R 0.50 deleterious_low_confidence(0.01) benign(0.001) TCGA-D3-A2JN-06 15 22868844 22868844 C T TUBGCP5 Silent p.L906L 0.18 TCGA-D3-A2JN-06 15 34040353 34040353 G A RYR3 Silent p.L2676L 0.26 TCGA-D3-A2JN-06 15 34078042 34078042 C T RYR3 Missense_Mutation p.P3150S 0.23 benign(0.126) TCGA-D3-A2JN-06 15 48539600 48539600 G A SLC12A1 Missense_Mutation p.E543K 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 15 64455229 64455229 G A PPIB 5'UTR 0.47 TCGA-D3-A2JN-06 15 73536753 73536753 C T NEO1 Missense_Mutation p.T507I 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A2JN-06 15 78921679 78921679 G A CHRNB4 Missense_Mutation p.S323L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 15 90168917 90168917 C T TICRR Silent p.D1792D 0.19 TCGA-D3-A2JN-06 16 16110416 16110416 C T ABCC1 Nonsense_Mutation p.Q185* 0.20 TCGA-D3-A2JN-06 16 20986677 20986677 C T DNAH3 Missense_Mutation p.E2713K 0.37 tolerated(0.08) benign(0.394) TCGA-D3-A2JN-06 16 22334249 22334249 C T POLR3E Silent p.F355F 0.50 TCGA-D3-A2JN-06 16 27556813 27556813 A C GTF3C1 Missense_Mutation p.L85V 0.37 tolerated(0.22) benign(0.025) TCGA-D3-A2JN-06 16 28880631 28880631 G A SH2B1 Silent p.L412L 0.31 TCGA-D3-A2JN-06 16 32077388 32077388 G A IGHV3OR16-9 Silent p.E1E 0.19 TCGA-D3-A2JN-06 16 338190 338190 G A AXIN1 Nonsense_Mutation p.R841* 0.23 TCGA-D3-A2JN-06 16 4254574 4254574 G A SRL Silent p.T41T 0.38 TCGA-D3-A2JN-06 16 66436860 66436860 G A CDH5 Missense_Mutation p.E715K 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JN-06 16 87678374 87678374 C T JPH3 Missense_Mutation p.S298F 0.16 deleterious(0) possibly_damaging(0.755) TCGA-D3-A2JN-06 17 26449709 26449710 AA T NLK Frame_Shift_Del p.K180Ifs*7 0.30 TCGA-D3-A2JN-06 17 38348880 38348880 G A RAPGEFL1 Missense_Mutation p.S354N 0.35 deleterious(0.03) benign(0.174) TCGA-D3-A2JN-06 17 38787946 38787946 C T SMARCE1 Splice_Site p.X239_splice 0.37 TCGA-D3-A2JN-06 17 39642737 39642737 G A KRT36 Missense_Mutation p.P432L 0.29 tolerated(0.09) benign(0.004) TCGA-D3-A2JN-06 17 39661729 39661729 C T KRT13 Missense_Mutation p.G25E 0.33 deleterious(0.01) unknown(0) TCGA-D3-A2JN-06 17 45384950 45384950 C T ITGB3 Nonsense_Mutation p.R750* 0.32 TCGA-D3-A2JN-06 17 47297556 47297556 C T ABI3 Missense_Mutation p.P224S 0.34 tolerated(0.43) benign(0) TCGA-D3-A2JN-06 17 67083580 67083580 G A ABCA6 Missense_Mutation p.P1245S 0.14 deleterious(0.02) benign(0.285) TCGA-D3-A2JN-06 17 67246096 67246096 G A ABCA5 Missense_Mutation p.P1572L 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 17 7189978 7189978 C T SLC2A4 3'UTR 0.40 TCGA-D3-A2JN-06 17 72366722 72366722 G A GPR142 Missense_Mutation p.E141K 0.14 deleterious(0.04) benign(0.13) TCGA-D3-A2JN-06 17 72926688 72926688 C T OTOP2 Missense_Mutation p.R320C 0.14 deleterious(0.02) possibly_damaging(0.564) TCGA-D3-A2JN-06 17 7534095 7534095 C T SHBG Nonsense_Mutation p.R101* 0.18 TCGA-D3-A2JN-06 17 76395464 76395464 C T PGS1 Silent p.L183L 0.11 TCGA-D3-A2JN-06 17 78321975 78321975 G A RNF213 Silent p.A3280A 0.41 TCGA-D3-A2JN-06 17 79263594 79263594 C A SLC38A10 Silent p.L38L 0.18 TCGA-D3-A2JN-06 17 79846180 79846180 C T ALYREF Silent p.R239R 0.26 TCGA-D3-A2JN-06 17 79864637 79864637 G A PCYT2 Silent p.F243F 0.15 TCGA-D3-A2JN-06 18 29104710 29104710 G A DSG2 Silent p.T291T 0.22 TCGA-D3-A2JN-06 18 29867779 29867779 C T GAREM Missense_Mutation p.D261N 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A2JN-06 18 31324184 31324184 G A ASXL3 Missense_Mutation p.G1458R 0.26 probably_damaging(0.953) TCGA-D3-A2JN-06 18 31463336 31463336 G A NOL4 Missense_Mutation p.T532I 0.21 deleterious(0.03) benign(0.059) TCGA-D3-A2JN-06 18 46956726 46956726 T C DYM Silent p.K13K 0.25 TCGA-D3-A2JN-06 18 63526247 63526247 G A CDH7 Missense_Mutation p.E487K 0.21 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A2JN-06 18 74611016 74611016 C T ZNF236 Nonsense_Mutation p.R576* 0.21 TCGA-D3-A2JN-06 18 74963127 74963127 G A GALR1 Missense_Mutation p.G208D 0.21 deleterious(0) possibly_damaging(0.875) TCGA-D3-A2JN-06 19 10421604 10421604 G A FDX1L Missense_Mutation p.A107V 0.32 deleterious(0) probably_damaging(0.955) TCGA-D3-A2JN-06 19 17760345 17760345 C T UNC13A Silent p.R497R 0.26 TCGA-D3-A2JN-06 19 21990432 21990432 G T ZNF43 Missense_Mutation p.Q803K 0.29 tolerated(0.23) benign(0.001) TCGA-D3-A2JN-06 19 22271732 22271732 C T ZNF257 Missense_Mutation p.H394Y 0.12 deleterious(0.01) possibly_damaging(0.577) TCGA-D3-A2JN-06 19 30934830 30934830 G A ZNF536 Missense_Mutation p.E121K 0.34 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JN-06 19 3542863 3542863 G A MFSD12 Silent p.A511A 0.11 TCGA-D3-A2JN-06 19 35715879 35715879 C T FAM187B Missense_Mutation p.R320K 0.14 tolerated(0.92) benign(0.008) TCGA-D3-A2JN-06 19 35823534 35823534 T C CD22 Missense_Mutation p.V40A 0.12 deleterious(0.03) benign(0.38) TCGA-D3-A2JN-06 19 36273350 36273350 C T ARHGAP33 Silent p.S387S 0.15 TCGA-D3-A2JN-06 19 40721043 40721043 C T MAP3K10 Silent p.S903S 0.38 TCGA-D3-A2JN-06 19 42482827 42482827 C T ATP1A3 Missense_Mutation p.D534N 0.17 tolerated(0.15) possibly_damaging(0.557) TCGA-D3-A2JN-06 19 43762220 43762220 C T PSG9 Intron 0.33 TCGA-D3-A2JN-06 19 47236436 47236436 G A STRN4 Silent p.V199V 0.10 TCGA-D3-A2JN-06 19 48789581 48789581 G A ZNF114 Missense_Mutation p.G234R 0.28 tolerated(0.29) probably_damaging(0.956) TCGA-D3-A2JN-06 19 48789582 48789582 G A ZNF114 Missense_Mutation p.G234E 0.26 tolerated(0.23) probably_damaging(0.931) TCGA-D3-A2JN-06 19 49657463 49657463 C T HRC Silent p.R344R 0.29 TCGA-D3-A2JN-06 19 53303978 53303978 G A ZNF28 Missense_Mutation p.R374C 0.13 tolerated(0.06) benign(0.002) TCGA-D3-A2JN-06 19 53994678 53994678 C T ZNF813 Missense_Mutation p.L398F 0.11 deleterious(0.04) possibly_damaging(0.663) TCGA-D3-A2JN-06 19 54200848 54200848 C T MIR525 RNA 0.24 TCGA-D3-A2JN-06 19 54803599 54803599 C T LILRA3 Silent p.Q75Q 0.18 TCGA-D3-A2JN-06 19 6468913 6468913 G A DENND1C Missense_Mutation p.P487S 0.17 tolerated(0.44) benign(0) TCGA-D3-A2JN-06 19 6820742 6820742 C T VAV1 Silent p.F78F 0.23 TCGA-D3-A2JN-06 19 9006662 9006662 C T MUC16 Missense_Mutation p.E13196K 0.15 probably_damaging(0.99) TCGA-D3-A2JN-06 19 9046505 9046505 G A MUC16 Missense_Mutation p.S11709F 0.12 benign(0.027) TCGA-D3-A2JN-06 19 9085301 9085301 C T MUC16 Missense_Mutation p.A2172T 0.18 unknown(0) TCGA-D3-A2JN-06 19 9236999 9236999 G A OR7G3 Missense_Mutation p.P210S 0.10 tolerated(0.08) benign(0.168) TCGA-D3-A2JN-06 19 9407134 9407134 A C ZNF699 Missense_Mutation p.F316V 0.11 deleterious(0) probably_damaging(0.941) TCGA-D3-A2JN-06 19 9724727 9724727 C T ZNF561 Silent p.L98L 0.19 TCGA-D3-A2JN-06 1 103544216 103544216 C T COL11A1 Silent p.G162G 0.42 TCGA-D3-A2JN-06 1 10399869 10399869 C T KIF1B Silent p.L1109L 0.23 TCGA-D3-A2JN-06 1 10471493 10471493 G A PGD Missense_Mutation p.G180S 0.20 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JN-06 1 110167965 110167965 C T AMPD2 Silent p.A98A 0.40 TCGA-D3-A2JN-06 1 111060909 111060909 G A KCNA10 Silent p.S167S 0.31 TCGA-D3-A2JN-06 1 12359375 12359375 G A VPS13D Silent p.G2050G 0.34 TCGA-D3-A2JN-06 1 12835082 12835082 C T PRAMEF12 Silent p.A24A 0.36 TCGA-D3-A2JN-06 1 143767503 143767503 T G PPIAL4G Missense_Mutation p.T116P 0.12 deleterious_low_confidence(0.01) benign(0.255) TCGA-D3-A2JN-06 1 147131150 147131150 G A ACP6 Missense_Mutation p.R162C 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.12 TCGA-D3-A2JN-06 1 152128515 152128515 G A RPTN Missense_Mutation p.H354Y 0.36 deleterious(0) benign(0.058) TCGA-D3-A2JN-06 1 152326064 152326064 C T FLG2 Missense_Mutation p.G1400R 0.40 benign(0) TCGA-D3-A2JN-06 1 152748928 152748928 G A LCE1F Silent p.P27P 0.31 TCGA-D3-A2JN-06 1 154061998 154061998 G A NUP210L Missense_Mutation p.R754C 0.34 deleterious(0) possibly_damaging(0.582) TCGA-D3-A2JN-06 1 154923959 154923959 C A PBXIP1 Missense_Mutation p.E77D 0.30 tolerated(0.1) benign(0.084) TCGA-D3-A2JN-06 1 155023108 155023108 G A DCST1 Missense_Mutation p.D629N 0.33 tolerated(0.2) benign(0.008) TCGA-D3-A2JN-06 1 156351238 156351238 G A RHBG Silent p.L258L 0.39 TCGA-D3-A2JN-06 1 158450091 158450091 C T OR10R2 Missense_Mutation p.R142C 0.18 deleterious(0.02) benign(0.117) TCGA-D3-A2JN-06 1 159409628 159409628 G A OR10J1 Missense_Mutation p.G27D 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A2JN-06 1 160466015 160466015 G A SLAMF6 Missense_Mutation p.P73L 0.17 tolerated(0.05) benign(0.272) TCGA-D3-A2JN-06 1 160970879 160970879 G A F11R Missense_Mutation p.P58S 0.27 tolerated(0.05) probably_damaging(0.91) TCGA-D3-A2JN-06 1 16577664 16577664 G A FBXO42 Missense_Mutation p.S552F 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D3-A2JN-06 1 166908769 166908769 C A ILDR2 Missense_Mutation p.A180S 0.30 tolerated(0.13) possibly_damaging(0.888) TCGA-D3-A2JN-06 1 169798453 169798453 G T C1orf112 Nonsense_Mutation p.E393* 0.15 TCGA-D3-A2JN-06 1 173808592 173808592 G A DARS2 Missense_Mutation p.D310N 0.34 tolerated(0.37) benign(0.005) TCGA-D3-A2JN-06 1 17668570 17668571 - G PADI4 Frame_Shift_Ins p.L264Afs*52 0.12 TCGA-D3-A2JN-06 1 176762728 176762728 C T PAPPA2 Missense_Mutation p.P1685S 0.31 tolerated(0.45) possibly_damaging(0.845) TCGA-D3-A2JN-06 1 18958101 18958101 G A PAX7 Missense_Mutation p.A2T 0.36 tolerated_low_confidence(0.85) benign(0.015) TCGA-D3-A2JN-06 1 19407947 19407947 A T UBR4 Silent p.L5043L 0.16 TCGA-D3-A2JN-06 1 197390634 197390634 C T CRB1 Missense_Mutation p.S559F 0.45 tolerated(0.07) benign(0.114) TCGA-D3-A2JN-06 1 207803915 207803915 G A CR1 Missense_Mutation p.G2469E 0.46 tolerated_low_confidence(1) benign(0.002) TCGA-D3-A2JN-06 1 212502539 212502539 T C PPP2R5A Missense_Mutation p.F82L 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JN-06 1 228556587 228556587 C T OBSCN Silent p.S7601S 0.36 TCGA-D3-A2JN-06 1 229773376 229773376 G A URB2 Missense_Mutation p.E1006K 0.29 deleterious(0.04) benign(0.054) TCGA-D3-A2JN-06 1 231056329 231056329 G A TTC13 Missense_Mutation p.P637L 0.38 deleterious(0.03) possibly_damaging(0.821) TCGA-D3-A2JN-06 1 231056330 231056330 G A TTC13 Missense_Mutation p.P637S 0.39 tolerated(0.09) possibly_damaging(0.67) TCGA-D3-A2JN-06 1 237754135 237754135 G A RYR2 Missense_Mutation p.E1335K 0.11 benign(0.036) TCGA-D3-A2JN-06 1 246498675 246498675 G A SMYD3 Silent p.F110F 0.34 TCGA-D3-A2JN-06 1 247201394 247201394 T C ZNF670 Missense_Mutation p.K176R 0.35 deleterious(0.02) benign(0.341) TCGA-D3-A2JN-06 1 248756773 248756773 G A OR2T10 Silent p.T99T 0.27 TCGA-D3-A2JN-06 1 248756774 248756774 G A OR2T10 Missense_Mutation p.T99I 0.27 tolerated(1) benign(0.001) TCGA-D3-A2JN-06 1 26107603 26107603 G A MAN1C1 Silent p.L550L 0.20 TCGA-D3-A2JN-06 1 28477168 28477168 G A PTAFR Missense_Mutation p.P122L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 1 29070135 29070135 G A YTHDF2 Silent p.G451G 0.13 TCGA-D3-A2JN-06 1 31351554 31351554 G C SDC3 Missense_Mutation p.P58A 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 1 32222312 32222312 G A BAI2 Silent p.A42A 0.14 TCGA-D3-A2JN-06 1 33291899 33291899 C T S100PBP Missense_Mutation p.P67S 0.17 tolerated(0.9) benign(0.007) TCGA-D3-A2JN-06 1 36354143 36354143 C T AGO1 Silent p.I47I 0.17 TCGA-D3-A2JN-06 1 44432202 44432202 C T IPO13 Intron 0.19 TCGA-D3-A2JN-06 1 46977876 46977876 G A DMBX1 Missense_Mutation p.E282K 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.78) TCGA-D3-A2JN-06 1 52385689 52385689 C T RAB3B Silent p.S190S 0.09 TCGA-D3-A2JN-06 1 6479858 6479858 C T HES2 Missense_Mutation p.G8E 0.36 tolerated(0.07) benign(0.037) TCGA-D3-A2JN-06 1 66102426 66102429 TCTA - LEPR Frame_Shift_Del p.Y1078Ifs*2 0.14 TCGA-D3-A2JN-06 1 94054934 94054934 G A BCAR3 Missense_Mutation p.R177C 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JN-06 20 30730862 30730862 C T TM9SF4 Silent p.Y202Y 0.36 TCGA-D3-A2JN-06 20 32344993 32344993 C A ZNF341 Missense_Mutation p.P261T 0.21 deleterious(0.05) possibly_damaging(0.904) TCGA-D3-A2JN-06 20 33722705 33722705 G A EDEM2 Missense_Mutation p.H180Y 0.21 tolerated(1) benign(0.009) TCGA-D3-A2JN-06 20 34090779 34090779 C T CEP250 Missense_Mutation p.L1528F 0.33 probably_damaging(0.984) TCGA-D3-A2JN-06 20 3543973 3543973 C T ATRN Silent p.A583A 0.26 TCGA-D3-A2JN-06 20 40944418 40944418 A C PTPRT Missense_Mutation p.L695R 0.10 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JN-06 20 41076902 41076902 C T PTPRT Nonsense_Mutation p.W506* 0.20 TCGA-D3-A2JN-06 20 41419967 41419967 C T PTPRT Silent p.G118G 0.21 TCGA-D3-A2JN-06 20 42887216 42887216 G A GDAP1L1 Missense_Mutation p.M172I 0.32 tolerated(0.19) benign(0.358) TCGA-D3-A2JN-06 20 43836807 43836807 C T SEMG1 Missense_Mutation p.S290F 0.22 tolerated(0.7) probably_damaging(0.958) TCGA-D3-A2JN-06 20 44171498 44171498 C T EPPIN Missense_Mutation p.E78K 0.15 tolerated(0.39) benign(0.018) TCGA-D3-A2JN-06 20 44236715 44236715 C T WFDC9 3'UTR 0.22 TCGA-D3-A2JN-06 20 47244407 47244407 G A PREX1 Missense_Mutation p.R1621W 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 20 5099424 5099424 C T PCNA Missense_Mutation p.E104K 0.28 deleterious(0) possibly_damaging(0.875) TCGA-D3-A2JN-06 20 57036200 57036200 G A APCDD1L Silent p.A384A 0.23 TCGA-D3-A2JN-06 20 57036201 57036201 G A APCDD1L Missense_Mutation p.A384V 0.24 tolerated(0.12) benign(0.004) TCGA-D3-A2JN-06 20 60733767 60733767 G A SS18L1 Missense_Mutation p.E37K 0.26 deleterious(0) possibly_damaging(0.489) TCGA-D3-A2JN-06 20 61929332 61929332 G A COL20A1 Silent p.G51G 0.29 TCGA-D3-A2JN-06 21 10906987 10906987 C T TPTE Missense_Mutation p.R525K 0.14 tolerated(1) benign(0) TCGA-D3-A2JN-06 21 11098747 11098747 C T BAGE2 RNA 0.07 TCGA-D3-A2JN-06 21 15882726 15882726 C T SAMSN1 Missense_Mutation p.D224N 0.19 tolerated(0.1) possibly_damaging(0.894) TCGA-D3-A2JN-06 21 34861163 34861163 G A DNAJC28 Missense_Mutation p.P180S 0.15 tolerated(0.62) benign(0.001) TCGA-D3-A2JN-06 21 38385891 38385891 G A RIPPLY3 Missense_Mutation p.G71E 0.19 deleterious(0) possibly_damaging(0.631) TCGA-D3-A2JN-06 21 38997703 38997703 C T KCNJ6 Missense_Mutation p.D344N 0.13 tolerated(0.08) benign(0.437) TCGA-D3-A2JN-06 21 40768907 40768907 C T WRB 3'UTR 0.17 TCGA-D3-A2JN-06 21 43160975 43160975 C T RIPK4 3'UTR 0.21 TCGA-D3-A2JN-06 21 43411721 43411721 G A ZBTB21 Silent p.S828S 0.19 TCGA-D3-A2JN-06 22 20096481 20096481 C T DGCR8 Silent p.I731I 0.29 TCGA-D3-A2JN-06 22 26702049 26702049 G A SEZ6L Missense_Mutation p.A485T 0.09 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JN-06 22 38620791 38620791 C T TMEM184B Splice_Site p.X328_splice 0.15 TCGA-D3-A2JN-06 22 46725451 46725451 C T GTSE1 Missense_Mutation p.P708L 0.17 tolerated(0.18) benign(0.006) TCGA-D3-A2JN-06 22 50665429 50665429 G A TUBGCP6 Missense_Mutation p.T497I 0.31 tolerated(0.08) probably_damaging(0.977) TCGA-D3-A2JN-06 2 111666434 111666434 G A ACOXL Missense_Mutation p.R286Q 0.39 deleterious(0.04) benign(0.16) TCGA-D3-A2JN-06 2 111666435 111666435 G A ACOXL Silent p.R286R 0.39 TCGA-D3-A2JN-06 2 113069500 113069500 G A ZC3H6 Missense_Mutation p.D245N 0.10 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JN-06 2 11355166 11355166 G A ROCK2 Missense_Mutation p.A579V 0.16 tolerated(0.21) benign(0.005) TCGA-D3-A2JN-06 2 116101408 116101408 C T DPP10 Missense_Mutation p.S68L 0.25 tolerated(0.33) benign(0.001) TCGA-D3-A2JN-06 2 152471030 152471030 C T NEB Silent p.P3787P 0.27 TCGA-D3-A2JN-06 2 152695707 152695707 G A CACNB4 Nonsense_Mutation p.Q497* 0.16 TCGA-D3-A2JN-06 2 152695708 152695708 G A CACNB4 Silent p.Y496Y 0.16 TCGA-D3-A2JN-06 2 155099411 155099411 G A GALNT13 Missense_Mutation p.E227K 0.29 tolerated(0.39) benign(0.012) TCGA-D3-A2JN-06 2 159166112 159166112 T C CCDC148 Missense_Mutation p.I315V 0.23 tolerated(0.16) benign(0) TCGA-D3-A2JN-06 2 160873122 160873122 T A PLA2R1 Intron 0.31 TCGA-D3-A2JN-06 2 167108394 167108394 C T SCN9A Missense_Mutation p.R1107K 0.16 tolerated(1) benign(0.001) TCGA-D3-A2JN-06 2 174228117 174228117 C T CDCA7 Missense_Mutation p.S183F 0.17 deleterious(0) probably_damaging(0.951) TCGA-D3-A2JN-06 2 179498794 179498794 G A TTN Silent p.F14144F 0.24 TCGA-D3-A2JN-06 2 179585274 179585274 G A TTN Nonsense_Mutation p.R7739* 0.26 TCGA-D3-A2JN-06 2 179605466 179605466 C T TTN Missense_Mutation p.G4165D 0.22 TCGA-D3-A2JN-06 2 179636195 179636195 C T TTN Missense_Mutation p.G2620E 0.18 TCGA-D3-A2JN-06 2 187693133 187693133 G A ZSWIM2 Missense_Mutation p.P494S 0.37 tolerated(0.22) benign(0.305) TCGA-D3-A2JN-06 2 191898252 191898252 C T STAT4 Missense_Mutation p.G606R 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 2 196682520 196682520 C T DNAH7 Missense_Mutation p.G3109R 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 2 202483646 202483646 C T ALS2CR11 Missense_Mutation p.G70S 0.29 tolerated(0.17) benign(0.034) TCGA-D3-A2JN-06 2 207170702 207170702 G A ZDBF2 Missense_Mutation p.D484N 0.26 deleterious(0) possibly_damaging(0.857) TCGA-D3-A2JN-06 2 207814428 207814428 C T CPO Silent p.P52P 0.32 TCGA-D3-A2JN-06 2 21230565 21230565 G A APOB Missense_Mutation p.R3059C 0.38 benign(0.083) TCGA-D3-A2JN-06 2 214354699 214354699 C T SPAG16 Missense_Mutation p.P319S 0.16 deleterious(0.04) possibly_damaging(0.746) TCGA-D3-A2JN-06 2 217315672 217315672 C T SMARCAL1 Missense_Mutation p.S652F 0.22 deleterious(0) probably_damaging(0.932) TCGA-D3-A2JN-06 2 220356953 220356953 C T SPEG Silent p.F3194F 0.37 TCGA-D3-A2JN-06 2 225739009 225739009 G A DOCK10 Silent p.L359L 0.31 TCGA-D3-A2JN-06 2 227953366 227953366 C T COL4A4 Intron 0.28 TCGA-D3-A2JN-06 2 228881249 228881249 C T SPHKAP Missense_Mutation p.G1441R 0.39 tolerated(0.31) benign(0.029) TCGA-D3-A2JN-06 2 228884529 228884529 G A SPHKAP Silent p.S347S 0.32 TCGA-D3-A2JN-06 2 234669099 234669099 G A UGT1A8 Intron 0.40 TCGA-D3-A2JN-06 2 241728654 241728654 G A KIF1A Missense_Mutation p.S61L 0.31 deleterious(0.01) benign(0.077) TCGA-D3-A2JN-06 2 30966411 30966411 G A CAPN13 Missense_Mutation p.S428F 0.32 tolerated(0.1) benign(0.16) TCGA-D3-A2JN-06 2 32654243 32654243 G A BIRC6 Missense_Mutation p.G968R 0.21 benign(0.186) TCGA-D3-A2JN-06 2 39046275 39046275 C T DHX57 Nonsense_Mutation p.W1101* 0.22 TCGA-D3-A2JN-06 2 48026038 48026038 G A MSH6 Missense_Mutation p.G306R 0.21 tolerated(0.41) possibly_damaging(0.682) TCGA-D3-A2JN-06 2 48026039 48026039 G A MSH6 Missense_Mutation p.G306E 0.21 tolerated(0.74) possibly_damaging(0.511) TCGA-D3-A2JN-06 2 48906503 48906503 C T STON1-GTF2A1L Silent p.F1157F 0.32 TCGA-D3-A2JN-06 2 48914908 48914908 G A LHCGR Silent p.S676S 0.36 TCGA-D3-A2JN-06 2 55252222 55252222 C T RTN4 Missense_Mutation p.V1005I 0.31 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A2JN-06 2 68413777 68413777 G A PPP3R1 Silent p.F96F 0.20 TCGA-D3-A2JN-06 2 73762047 73762047 C T ALMS1 Missense_Mutation p.S3292L 0.22 probably_damaging(0.983) TCGA-D3-A2JN-06 2 74328040 74328040 C T TET3 Silent p.L1240L 0.29 TCGA-D3-A2JN-06 2 89999548 89999548 T A IGKV2D-28 Missense_Mutation p.L117Q 0.39 tolerated(0.27) benign(0.015) TCGA-D3-A2JN-06 2 90199187 90199187 C T IGKV1D-12 Silent p.F116F 0.25 TCGA-D3-A2JN-06 2 96781056 96781056 G A ADRA2B Missense_Mutation p.P278L 0.43 deleterious(0.03) possibly_damaging(0.471) TCGA-D3-A2JN-06 3 105412365 105412367 GGA - CBLB In_Frame_Del p.P676del 0.15 TCGA-D3-A2JN-06 3 10865069 10865069 G A SLC6A11 Silent p.E205E 0.46 TCGA-D3-A2JN-06 3 108751602 108751602 C T MORC1 Nonsense_Mutation p.W510* 0.19 TCGA-D3-A2JN-06 3 123419379 123419379 G A MYLK Missense_Mutation p.P979L 0.25 deleterious(0.01) benign(0.003) TCGA-D3-A2JN-06 3 125844480 125844480 T G ALDH1L1 Silent p.T603T 0.14 TCGA-D3-A2JN-06 3 130300683 130300685 CTC - COL6A6 In_Frame_Del p.L1276del 0.11 TCGA-D3-A2JN-06 3 134322923 134322923 G A KY Missense_Mutation p.S495F 0.38 deleterious(0) probably_damaging(0.965) TCGA-D3-A2JN-06 3 142030585 142030585 G A XRN1 Missense_Mutation p.P1630L 0.23 tolerated_low_confidence(0.24) benign(0.003) TCGA-D3-A2JN-06 3 150931937 150931937 G A P2RY14 Silent p.F56F 0.12 TCGA-D3-A2JN-06 3 155200465 155200465 C T PLCH1 Missense_Mutation p.G1125E 0.17 tolerated_low_confidence(0.34) benign(0.021) TCGA-D3-A2JN-06 3 160135741 160135741 G A SMC4 Silent p.K556K 0.31 TCGA-D3-A2JN-06 3 160135742 160135742 G A SMC4 Missense_Mutation p.E557K 0.31 tolerated(0.69) benign(0.004) TCGA-D3-A2JN-06 3 170744526 170744526 C T SLC2A2 5'UTR 0.43 TCGA-D3-A2JN-06 3 183454519 183454519 C T YEATS2 Missense_Mutation p.H276Y 0.36 deleterious(0) possibly_damaging(0.633) TCGA-D3-A2JN-06 3 185167787 185167787 C T MAP3K13 Silent p.L370L 0.27 TCGA-D3-A2JN-06 3 197665517 197665517 G A IQCG Silent p.F139F 0.22 TCGA-D3-A2JN-06 3 26751901 26751901 G A LRRC3B Silent p.Q246Q 0.31 TCGA-D3-A2JN-06 3 27215979 27215979 C T NEK10 Silent p.S909S 0.33 TCGA-D3-A2JN-06 3 38674603 38674603 C T SCN5A Missense_Mutation p.D66N 0.27 tolerated(0.48) probably_damaging(0.977) TCGA-D3-A2JN-06 3 41278183 41278183 C T CTNNB1 Missense_Mutation p.P687S 0.28 tolerated(0.32) benign(0.001) TCGA-D3-A2JN-06 3 41278184 41278184 C T CTNNB1 Missense_Mutation p.P687L 0.28 deleterious(0.03) benign(0.001) TCGA-D3-A2JN-06 3 48613167 48613167 C T COL7A1 Silent p.R1957R 0.26 TCGA-D3-A2JN-06 3 48613168 48613168 C T COL7A1 Missense_Mutation p.R1957Q 0.26 unknown(0) TCGA-D3-A2JN-06 3 51928924 51928924 G A IQCF1 Silent p.P200P 0.24 TCGA-D3-A2JN-06 3 74347205 74347205 G A CNTN3 Silent p.I768I 0.38 TCGA-D3-A2JN-06 3 9547826 9547826 C T LHFPL4 Silent p.R156R 0.37 TCGA-D3-A2JN-06 3 97888274 97888274 A G OR5H15 Missense_Mutation p.H244R 0.16 deleterious(0.01) possibly_damaging(0.739) TCGA-D3-A2JN-06 3 99567893 99567893 C T FILIP1L Missense_Mutation p.G876E 0.29 deleterious(0.03) probably_damaging(0.909) TCGA-D3-A2JN-06 4 100242475 100242475 C T ADH1B Missense_Mutation p.G5E 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JN-06 4 162376250 162376250 G A FSTL5 Missense_Mutation p.H583Y 0.44 deleterious(0) possibly_damaging(0.885) TCGA-D3-A2JN-06 4 3255173 3255173 C T MSANTD1 Missense_Mutation p.S187F 0.28 deleterious(0.03) possibly_damaging(0.665) TCGA-D3-A2JN-06 4 44712985 44712985 C T GNPDA2 Silent p.V193V 0.14 TCGA-D3-A2JN-06 4 6611595 6611595 G A MAN2B2 Missense_Mutation p.G693R 0.17 tolerated(0.1) benign(0.273) TCGA-D3-A2JN-06 4 76452300 76452300 C T THAP6 Missense_Mutation p.S182L 0.19 tolerated(0.09) benign(0.055) TCGA-D3-A2JN-06 4 84379500 84379500 C T MRPS18C Missense_Mutation p.P51L 0.10 tolerated(0.06) benign(0.356) TCGA-D3-A2JN-06 5 112889319 112889319 G A YTHDC2 Missense_Mutation p.E634K 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JN-06 5 132150810 132150810 G T SOWAHA Silent p.S499S 0.22 TCGA-D3-A2JN-06 5 137727397 137727397 C T KDM3B Silent p.L692L 0.28 TCGA-D3-A2JN-06 5 137776703 137776703 A G REEP2 Splice_Site p.X11_splice 0.14 TCGA-D3-A2JN-06 5 13841969 13841969 C T DNAH5 Silent p.T1772T 0.29 TCGA-D3-A2JN-06 5 138655053 138655053 G C MATR3 Missense_Mutation p.D489H 0.14 tolerated(0.07) benign(0.186) TCGA-D3-A2JN-06 5 140175450 140175450 G A PCDHA2 Missense_Mutation p.E301K 0.37 deleterious_low_confidence(0.02) benign(0.113) TCGA-D3-A2JN-06 5 140308491 140308491 G A PCDHAC1 Missense_Mutation p.E672K 0.23 tolerated(0.48) benign(0.061) TCGA-D3-A2JN-06 5 140482592 140482592 C T PCDHB3 Missense_Mutation p.P787S 0.17 tolerated_low_confidence(0.39) benign(0) TCGA-D3-A2JN-06 5 140562004 140562004 G A PCDHB16 5'UTR 0.22 TCGA-D3-A2JN-06 5 140788486 140788486 C T PCDHGB6 Silent p.P239P 0.33 TCGA-D3-A2JN-06 5 141248676 141248676 G A PCDH1 Missense_Mutation p.R121C 0.38 tolerated(0.06) probably_damaging(0.931) TCGA-D3-A2JN-06 5 148207177 148207177 T C ADRB2 Silent p.S261S 0.20 TCGA-D3-A2JN-06 5 153030000 153030000 G A GRIA1 Missense_Mutation p.D201N 0.25 deleterious(0.03) benign(0.004) TCGA-D3-A2JN-06 5 153149865 153149865 C T GRIA1 Silent p.S730S 0.11 TCGA-D3-A2JN-06 5 154396448 154396448 C T KIF4B Missense_Mutation p.T1010I 0.23 tolerated(0.23) benign(0.001) TCGA-D3-A2JN-06 5 156381674 156381674 C T TIMD4 Missense_Mutation p.S51N 0.26 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JN-06 5 156723741 156723741 G A CYFIP2 Missense_Mutation p.E90K 0.17 tolerated(0.45) benign(0.005) TCGA-D3-A2JN-06 5 157178450 157178450 G A LSM11 Silent p.V167V 0.24 TCGA-D3-A2JN-06 5 158141145 158141145 C T EBF1 Missense_Mutation p.G391R 0.20 deleterious(0.01) possibly_damaging(0.554) TCGA-D3-A2JN-06 5 169507175 169507175 G A DOCK2 Silent p.R1725R 0.16 TCGA-D3-A2JN-06 5 173029 173029 G A PLEKHG4B Silent p.Q1000Q 0.34 TCGA-D3-A2JN-06 5 178310383 178310383 G C ZNF354B Missense_Mutation p.R310S 0.14 tolerated(0.83) probably_damaging(0.966) TCGA-D3-A2JN-06 5 26903764 26903764 C G CDH9 Silent p.G327G 0.38 TCGA-D3-A2JN-06 5 35876102 35876102 C T IL7R Silent p.F298F 0.36 TCGA-D3-A2JN-06 5 35965875 35965875 G A UGT3A1 Silent p.F152F 0.31 TCGA-D3-A2JN-06 5 38438540 38438540 G A EGFLAM Missense_Mutation p.G816E 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JN-06 5 40936531 40936531 G A C7 Silent p.R124R 0.41 TCGA-D3-A2JN-06 5 44388533 44388534 AG - FGF10 Frame_Shift_Del p.S84Ffs*9 0.11 TCGA-D3-A2JN-06 5 6337325 6337325 G T CTD-2324F15.2 RNA 0.11 TCGA-D3-A2JN-06 5 6337333 6337333 G A CTD-2324F15.2 RNA 0.31 TCGA-D3-A2JN-06 5 64748012 64748012 C T ADAMTS6 Missense_Mutation p.G292E 0.22 deleterious(0.04) probably_damaging(0.99) TCGA-D3-A2JN-06 5 70858216 70858216 T A BDP1 Missense_Mutation p.L2538I 0.18 deleterious(0.01) benign(0.106) TCGA-D3-A2JN-06 5 71015041 71015041 C T CARTPT 5'UTR 0.34 TCGA-D3-A2JN-06 5 71516651 71516651 G A MRPS27 3'UTR 0.12 TCGA-D3-A2JN-06 5 76028217 76028217 G A F2R Nonsense_Mutation p.W56* 0.29 TCGA-D3-A2JN-06 5 94861361 94861361 T C TTC37 Missense_Mutation p.N384S 0.26 tolerated(0.41) benign(0.016) TCGA-D3-A2JN-06 5 94990055 94990055 A G RFESD Missense_Mutation p.H118R 0.21 tolerated(0.39) possibly_damaging(0.9) TCGA-D3-A2JN-06 6 131973708 131973708 C T ENPP3 Missense_Mutation p.R102C 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 6 133138448 133138448 G A RPS12 Intron 0.11 TCGA-D3-A2JN-06 6 133138449 133138449 A T RPS12 Intron 0.10 TCGA-D3-A2JN-06 6 146264611 146264611 G A SHPRH Silent p.L636L 0.16 TCGA-D3-A2JN-06 6 166923790 166923790 G A RPS6KA2 Silent p.H126H 0.23 TCGA-D3-A2JN-06 6 30115575 30115575 C T TRIM40 Missense_Mutation p.P226S 0.29 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JN-06 6 33140112 33140112 G A COL11A2 Missense_Mutation p.A895V 0.36 possibly_damaging(0.682) TCGA-D3-A2JN-06 6 33423652 33423652 C T ZBTB9 Missense_Mutation p.P259S 0.38 tolerated(0.3) benign(0.004) TCGA-D3-A2JN-06 6 35705030 35705030 T G ARMC12 Missense_Mutation p.S49A 0.25 tolerated(0.09) possibly_damaging(0.793) TCGA-D3-A2JN-06 6 43193825 43193825 C T DNPH1 Missense_Mutation p.A108T 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 6 43193826 43193826 C T DNPH1 Silent p.R107R 0.24 TCGA-D3-A2JN-06 6 55223928 55223928 C T GFRAL Missense_Mutation p.S315L 0.34 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JN-06 6 6146001 6146001 T A F13A1 Missense_Mutation p.I684F 0.30 deleterious(0) possibly_damaging(0.574) TCGA-D3-A2JN-06 6 8097525 8097525 T C EEF1E1 Missense_Mutation p.K88R 0.28 tolerated(0.2) benign(0.037) TCGA-D3-A2JN-06 6 87725312 87725312 G A HTR1E Missense_Mutation p.R87H 0.28 tolerated(0.06) benign(0.329) TCGA-D3-A2JN-06 7 107756507 107756507 G A LAMB4 Missense_Mutation p.A45V 0.18 deleterious(0.02) possibly_damaging(0.492) TCGA-D3-A2JN-06 7 116412001 116412001 G A MET Missense_Mutation p.V1014I 0.19 tolerated(0.16) probably_damaging(0.994) TCGA-D3-A2JN-06 7 120387884 120387884 G A KCND2 Missense_Mutation p.G622E 0.15 tolerated_low_confidence(0.07) benign(0.017) TCGA-D3-A2JN-06 7 126544699 126544699 C T GRM8 Missense_Mutation p.E256K 0.34 tolerated(0.19) probably_damaging(0.926) TCGA-D3-A2JN-06 7 128315743 128315743 G A FAM71F2 Silent p.G65G 0.21 TCGA-D3-A2JN-06 7 128485004 128485004 G A FLNC Missense_Mutation p.G1162E 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 7 138601867 138601867 A G KIAA1549 Silent p.G835G 0.33 TCGA-D3-A2JN-06 7 139799824 139799824 C T KDM7A Splice_Site p.X547_splice 0.36 TCGA-D3-A2JN-06 7 140285496 140285496 C T DENND2A Missense_Mutation p.E380K 0.18 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JN-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JN-06 7 142131892 142131892 G A TRBV5-6 5'UTR 0.14 TCGA-D3-A2JN-06 7 148311286 148311286 C T C7orf33 Silent p.G119G 0.27 TCGA-D3-A2JN-06 7 150644006 150644006 C T KCNH2 Missense_Mutation p.V1097I 0.37 tolerated(0.11) benign(0.001) TCGA-D3-A2JN-06 7 21892165 21892165 G A DNAH11 Silent p.A3666A 0.32 TCGA-D3-A2JN-06 7 24331428 24331428 C T NPY 3'Flank 0.27 TCGA-D3-A2JN-06 7 24932067 24932067 C T OSBPL3 Missense_Mutation p.G9S 0.25 tolerated(0.61) benign(0.05) TCGA-D3-A2JN-06 7 42011936 42011936 C T GLI3 Missense_Mutation p.M701I 0.27 deleterious(0.03) possibly_damaging(0.515) TCGA-D3-A2JN-06 7 44805830 44805830 C T ZMIZ2 Silent p.T770T 0.32 TCGA-D3-A2JN-06 7 47342997 47342997 G A TNS3 Missense_Mutation p.S1003F 0.28 deleterious(0) benign(0.288) TCGA-D3-A2JN-06 7 4874717 4874717 C T RADIL Missense_Mutation p.G313R 0.21 tolerated(0.43) benign(0.004) TCGA-D3-A2JN-06 7 6048881 6048881 C T AIMP2 5'UTR 0.32 TCGA-D3-A2JN-06 7 65557819 65557819 G T ASL Missense_Mutation p.A439S 0.30 tolerated(0.29) benign(0.021) TCGA-D3-A2JN-06 7 72413673 72413673 C T POM121 Silent p.F782F 0.27 TCGA-D3-A2JN-06 7 73008693 73008693 C T MLXIPL Missense_Mutation p.G784E 0.32 deleterious(0) probably_damaging(0.973) TCGA-D3-A2JN-06 7 94881170 94881170 G A PPP1R9A Silent p.R831R 0.11 TCGA-D3-A2JN-06 7 95750453 95750453 C T SLC25A13 3'UTR 0.34 TCGA-D3-A2JN-06 7 99097741 99097741 C T ZNF394 5'UTR 0.19 TCGA-D3-A2JN-06 8 100654394 100654394 T C VPS13B Missense_Mutation p.V1884A 0.50 tolerated(0.64) possibly_damaging(0.857) TCGA-D3-A2JN-06 8 100975164 100975164 C T RGS22 Missense_Mutation p.E1220K 0.10 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JN-06 8 105441912 105441912 C T DPYS Missense_Mutation p.E271K 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.46 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A2JN-06 8 106815700 106815700 C T ZFPM2 Silent p.N1130N 0.29 TCGA-D3-A2JN-06 8 10756188 10756188 C T XKR6 Nonsense_Mutation p.W400* 0.19 TCGA-D3-A2JN-06 8 121259933 121259933 C T COL14A1 Missense_Mutation p.S854F 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-D3-A2JN-06 8 131826344 131826344 G A ADCY8 Missense_Mutation p.H962Y 0.48 deleterious(0.04) probably_damaging(0.985) TCGA-D3-A2JN-06 8 134475675 134475675 G A ST3GAL1 Silent p.I237I 0.52 TCGA-D3-A2JN-06 8 139144977 139144977 A C FAM135B Silent p.T1360T 0.05 TCGA-D3-A2JN-06 8 139890260 139890260 G A COL22A1 Missense_Mutation p.P131S 0.38 unknown(0) TCGA-D3-A2JN-06 8 1624770 1624770 G A DLGAP2 Silent p.V678V 0.25 TCGA-D3-A2JN-06 8 24333986 24333986 G A ADAM7 Missense_Mutation p.R225Q 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A2JN-06 8 24359024 24359024 G A ADAM7 Missense_Mutation p.G715R 0.24 deleterious(0.03) probably_damaging(0.973) TCGA-D3-A2JN-06 8 24810311 24810311 G T CTD-2168K21.2 5'Flank 0.19 TCGA-D3-A2JN-06 8 25747344 25747344 C T EBF2 Silent p.L225L 0.26 TCGA-D3-A2JN-06 8 27098744 27098744 C A STMN4 Missense_Mutation p.D76Y 0.20 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A2JN-06 8 2830723 2830723 C T CSMD1 Missense_Mutation p.E2947K 0.30 probably_damaging(0.986) TCGA-D3-A2JN-06 8 2836224 2836224 G A CSMD1 Missense_Mutation p.H2826Y 0.35 possibly_damaging(0.855) TCGA-D3-A2JN-06 8 33454934 33454934 C T DUSP26 Missense_Mutation p.E34K 0.26 tolerated(0.19) benign(0.027) TCGA-D3-A2JN-06 8 39022299 39022299 C T ADAM32 Missense_Mutation p.S204F 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 8 39468072 39468072 C T ADAM18 Silent p.I123I 0.37 TCGA-D3-A2JN-06 8 41552695 41552695 C T ANK1 Missense_Mutation p.E1080K 0.19 deleterious(0.05) possibly_damaging(0.82) TCGA-D3-A2JN-06 8 67061995 67061995 A C TRIM55 Missense_Mutation p.K240T 0.15 deleterious(0) probably_damaging(0.974) TCGA-D3-A2JN-06 8 77690630 77690630 C T ZFHX4 Missense_Mutation p.L1094F 0.43 possibly_damaging(0.765) TCGA-D3-A2JN-06 8 80567129 80567129 A T STMN2 Missense_Mutation p.K104N 0.28 deleterious(0.03) possibly_damaging(0.743) TCGA-D3-A2JN-06 8 90782122 90782122 A C RIPK2 Missense_Mutation p.Q202H 0.07 deleterious(0) probably_damaging(0.986) TCGA-D3-A2JN-06 9 100616457 100616457 C T FOXE1 Silent p.F87F 0.26 TCGA-D3-A2JN-06 9 113449463 113449463 C G MUSK Missense_Mutation p.D91E 0.13 tolerated_low_confidence(0.42) benign(0.01) TCGA-D3-A2JN-06 9 119461791 119461791 C T TRIM32 Silent p.I590I 0.42 TCGA-D3-A2JN-06 9 135172314 135172314 G A SETX Missense_Mutation p.S1970L 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 9 35556373 35556373 C T RUSC2 Missense_Mutation p.P971S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A2JN-06 9 35556374 35556374 C T RUSC2 Missense_Mutation p.P971L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 9 35607612 35607612 G A TESK1 Silent p.V218V 0.30 TCGA-D3-A2JN-06 9 35607613 35607613 G A TESK1 Missense_Mutation p.G219S 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JN-06 9 4286286 4286286 G A GLIS3 Missense_Mutation p.S47L 0.15 deleterious(0.01) benign(0.016) TCGA-D3-A2JN-06 9 90502618 90502618 C A SPATA31E1 Silent p.T1072T 0.42 TCGA-D3-A2JN-06 9 95277109 95277109 C T ECM2 Silent p.E286E 0.39 TCGA-D3-A2JN-06 9 95400563 95400563 C G IPPK Splice_Site p.X213_splice 0.40 TCGA-D3-A2JN-06 X 100613678 100613678 C T BTK Missense_Mutation p.E301K 0.14 deleterious(0) possibly_damaging(0.622) TCGA-D3-A2JN-06 X 101768955 101768955 A T TMSB15A 3'UTR 0.25 TCGA-D3-A2JN-06 X 123518064 123518064 G A TENM1 Silent p.G2239G 0.22 TCGA-D3-A2JN-06 X 123870902 123870902 G T TENM1 Silent p.P227P 0.15 TCGA-D3-A2JN-06 X 134494271 134494271 C T ZNF449 Missense_Mutation p.P276L 0.29 tolerated(1) benign(0.001) TCGA-D3-A2JN-06 X 140993246 140993246 C T MAGEC1 Missense_Mutation p.S19F 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-D3-A2JN-06 X 140993839 140993839 T C MAGEC1 Missense_Mutation p.S217P 0.05 tolerated_low_confidence(0.42) benign(0.307) TCGA-D3-A2JN-06 X 148627267 148627267 C T CXorf40A Silent p.L31L 0.16 TCGA-D3-A2JN-06 X 19983691 19983691 C T CXorf23 Missense_Mutation p.E249K 0.10 tolerated(0.1) benign(0.249) TCGA-D3-A2JN-06 X 20062573 20062573 C T MAP7D2 Missense_Mutation p.R263Q 0.10 deleterious(0.02) possibly_damaging(0.843) TCGA-D3-A2JN-06 X 29973353 29973353 G A IL1RAPL1 Missense_Mutation p.G503R 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A2JN-06 X 37029343 37029343 G A FAM47C Missense_Mutation p.D954N 0.10 deleterious(0.04) possibly_damaging(0.706) TCGA-D3-A2JN-06 X 52825232 52825232 G A SPANXN5 3'UTR 0.42 TCGA-D3-A2JN-06 X 65242600 65242600 C T VSIG4 Intron 0.16 TCGA-D3-A2JN-06 X 69719869 69719869 C T DLG3 Silent p.S705S 0.12 TCGA-D3-A2JN-06 X 69945158 69945158 C T TEX11 Missense_Mutation p.M308I 0.24 tolerated(1) benign(0.046) TCGA-D3-A2JN-06 X 73064629 73064629 G A XIST RNA 0.32 TCGA-D3-A2JN-06 X 73963631 73963631 G A KIAA2022 Missense_Mutation p.S254F 0.12 deleterious(0.02) possibly_damaging(0.632) TCGA-D3-A2JN-06 X 86880700 86880700 C T KLHL4 Missense_Mutation p.P410S 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A2JN-06 X 86880701 86880701 C T KLHL4 Missense_Mutation p.P410L 0.15 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JO-06 10 102058345 102058345 G A PKD2L1 Silent p.L235L 0.41 TCGA-D3-A2JO-06 10 102566256 102566256 G A PAX2 Missense_Mutation p.R252Q 0.22 deleterious(0.04) benign(0.18) TCGA-D3-A2JO-06 10 126395310 126395310 T C FAM53B 5'UTR 0.41 TCGA-D3-A2JO-06 10 126694453 126694453 G A CTBP2 Intron 0.23 TCGA-D3-A2JO-06 10 129231674 129231674 C T DOCK1 Missense_Mutation p.S1660F 0.32 deleterious(0.02) possibly_damaging(0.831) TCGA-D3-A2JO-06 10 134010400 134010400 G A DPYSL4 Missense_Mutation p.D172N 0.23 tolerated(0.16) probably_damaging(0.946) TCGA-D3-A2JO-06 10 134999672 134999672 A G KNDC1 Missense_Mutation p.S274G 0.29 tolerated(0.85) benign(0) TCGA-D3-A2JO-06 10 135165827 135165827 C T PRAP1 Silent p.Y113Y 0.11 TCGA-D3-A2JO-06 10 14816510 14816510 G A FAM107B Silent p.T51T 0.17 TCGA-D3-A2JO-06 10 18266932 18266932 G A SLC39A12 Missense_Mutation p.D285N 0.21 tolerated(0.24) benign(0.005) TCGA-D3-A2JO-06 10 21134200 21134200 T C NEBL Missense_Mutation p.N405S 0.33 tolerated(0.43) benign(0.002) TCGA-D3-A2JO-06 10 21169773 21169773 C T NEBL Missense_Mutation p.E144K 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A2JO-06 10 28149619 28149619 C T ARMC4 Missense_Mutation p.A986T 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 10 29812462 29812462 T C SVIL Silent p.G1027G 0.28 TCGA-D3-A2JO-06 10 32197517 32197517 A G ARHGAP12 Silent p.N89N 0.29 TCGA-D3-A2JO-06 10 33103331 33103331 G A C10ORF68 Missense_Mutation p.G315E 0.11 tolerated(0.11) probably_damaging(0.998) TCGA-D3-A2JO-06 10 35929461 35929461 G A FZD8 Silent p.F299F 0.42 TCGA-D3-A2JO-06 10 35930060 35930060 A T FZD8 Missense_Mutation p.Y100N 0.29 deleterious(0) unknown(0) TCGA-D3-A2JO-06 10 37441036 37441036 C T ANKRD30A Missense_Mutation p.S509F 0.17 deleterious(0.02) possibly_damaging(0.831) TCGA-D3-A2JO-06 10 46159129 46159129 C T ZFAND4 Missense_Mutation p.M15I 0.39 tolerated(0.26) benign(0.005) TCGA-D3-A2JO-06 10 50531539 50531539 C T C10orf71 Missense_Mutation p.P317S 0.27 tolerated(0.25) benign(0.027) TCGA-D3-A2JO-06 10 50943218 50943218 C T OGDHL 3'UTR 0.48 TCGA-D3-A2JO-06 10 55568492 55568492 G A PCDH15 Missense_Mutation p.S707L 0.57 deleterious_low_confidence(0) unknown(0) TCGA-D3-A2JO-06 10 72357828 72357828 C T PRF1 Missense_Mutation p.R550Q 0.42 deleterious(0.03) benign(0.241) TCGA-D3-A2JO-06 10 74684322 74684322 G A OIT3 Silent p.L429L 0.37 TCGA-D3-A2JO-06 10 81053538 81053538 C T ZMIZ1 Intron 0.71 TCGA-D3-A2JO-06 10 95720581 95720581 C T PIPSL RNA 0.34 TCGA-D3-A2JO-06 10 96522594 96522594 G A CYP2C19 Silent p.Q44Q 0.39 TCGA-D3-A2JO-06 10 98369571 98369571 C T PIK3AP1 Missense_Mutation p.E690K 0.43 deleterious(0) possibly_damaging(0.853) TCGA-D3-A2JO-06 11 10516495 10516495 C T AMPD3 Missense_Mutation p.P404L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 11 10822178 10822178 T C EIF4G2 Missense_Mutation p.E554G 0.31 deleterious(0.03) benign(0.1) TCGA-D3-A2JO-06 11 118343920 118343920 C T KMT2A Silent p.L682L 0.50 TCGA-D3-A2JO-06 11 118771497 118771497 G A BCL9L Silent p.V985V 0.29 TCGA-D3-A2JO-06 11 123814341 123814341 G A OR6T1 Silent p.L69L 0.29 TCGA-D3-A2JO-06 11 124765755 124765755 C T ROBO4 Missense_Mutation p.E245K 0.28 deleterious(0.02) benign(0.034) TCGA-D3-A2JO-06 11 19197496 19197496 C T ZDHHC13 Missense_Mutation p.R620C 0.21 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-D3-A2JO-06 11 20057619 20057619 C T NAV2 Silent p.S984S 0.22 TCGA-D3-A2JO-06 11 20417360 20417360 C T PRMT3 Missense_Mutation p.L138F 0.26 probably_damaging(0.933) TCGA-D3-A2JO-06 11 22747898 22747898 A G GAS2 Missense_Mutation p.R110G 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 11 26556094 26556094 G A ANO3 Missense_Mutation p.G321R 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A2JO-06 11 2943699 2943699 C T SLC22A18 Silent p.L334L 0.20 TCGA-D3-A2JO-06 11 2946429 2946429 C T SLC22A18 3'UTR 0.34 TCGA-D3-A2JO-06 11 30033394 30033394 C T KCNA4 Missense_Mutation p.E278K 0.16 deleterious(0.05) probably_damaging(0.951) TCGA-D3-A2JO-06 11 30033883 30033883 C T KCNA4 Missense_Mutation p.E115K 0.20 deleterious_low_confidence(0.02) benign(0.292) TCGA-D3-A2JO-06 11 45832350 45832350 C T SLC35C1 Nonsense_Mutation p.Q187* 0.17 TCGA-D3-A2JO-06 11 4703390 4703390 C T OR51E2 Missense_Mutation p.M184I 0.22 tolerated(0.11) probably_damaging(0.989) TCGA-D3-A2JO-06 11 4703875 4703875 G A OR51E2 Missense_Mutation p.H23Y 0.25 tolerated(0.1) benign(0.153) TCGA-D3-A2JO-06 11 4869963 4869963 C T OR51S1 Missense_Mutation p.R159Q 0.20 deleterious(0.01) benign(0.161) TCGA-D3-A2JO-06 11 4929383 4929383 C T OR51A7 Missense_Mutation p.H262Y 0.20 deleterious(0) benign(0.094) TCGA-D3-A2JO-06 11 4945306 4945316 CCAGAAAATGC - OR51G1 Frame_Shift_Del p.G85Vfs*2 0.25 TCGA-D3-A2JO-06 11 4967442 4967442 T G OR51A4 Missense_Mutation p.T297P 0.08 deleterious(0) probably_damaging(0.955) TCGA-D3-A2JO-06 11 50003196 50003196 T A OR4C12 Missense_Mutation p.N281I 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A2JO-06 11 5010886 5010886 C T MMP26 Silent p.F36F 0.50 TCGA-D3-A2JO-06 11 502099 502099 C G RNH1 Missense_Mutation p.E22Q 0.29 deleterious(0.05) benign(0.343) TCGA-D3-A2JO-06 11 5153159 5153159 G A OR52A5 Silent p.F238F 0.27 TCGA-D3-A2JO-06 11 5221055 5221055 G A OR51V1 Silent p.F292F 0.15 TCGA-D3-A2JO-06 11 5221880 5221880 C T OR51V1 Silent p.T17T 0.29 TCGA-D3-A2JO-06 11 5323122 5323122 C T OR51B4 Missense_Mutation p.E19K 0.22 deleterious(0) benign(0.323) TCGA-D3-A2JO-06 11 5372797 5372797 G A OR51B6 Silent p.K20K 0.25 TCGA-D3-A2JO-06 11 5443520 5443520 C T OR51Q1 Silent p.S30S 0.20 TCGA-D3-A2JO-06 11 55038139 55038139 G A TRIM48 3'UTR 0.22 TCGA-D3-A2JO-06 11 55322663 55322663 G A OR4C15 Missense_Mutation p.G294E 0.18 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-D3-A2JO-06 11 55579695 55579695 C T OR5L1 Silent p.F251F 0.29 TCGA-D3-A2JO-06 11 55761208 55761208 C T OR5F1 Silent p.K298K 0.18 TCGA-D3-A2JO-06 11 55798785 55798785 G A OR5AS1 Silent p.V297V 0.32 TCGA-D3-A2JO-06 11 55873002 55873002 T C OR8H2 Missense_Mutation p.S162P 0.22 tolerated(0.15) benign(0.217) TCGA-D3-A2JO-06 11 55927748 55927748 C T OR8K5 Missense_Mutation p.E16K 0.27 deleterious_low_confidence(0) benign(0) TCGA-D3-A2JO-06 11 56085890 56085890 G A OR8K3 Silent p.V36V 0.41 TCGA-D3-A2JO-06 11 56310479 56310479 G A OR5M11 Silent p.I85I 0.36 TCGA-D3-A2JO-06 11 58602210 58602210 C T GLYATL2 Missense_Mutation p.E193K 0.28 tolerated(0.65) possibly_damaging(0.789) TCGA-D3-A2JO-06 11 60885711 60885711 G A CD5 Silent p.K53K 0.33 TCGA-D3-A2JO-06 11 60885712 60885712 G A CD5 Missense_Mutation p.D54N 0.33 tolerated(0.76) benign(0.001) TCGA-D3-A2JO-06 11 62123802 62123802 G A ASRGL1 Missense_Mutation p.G66R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 11 64033465 64033465 C T PLCB3 Missense_Mutation p.A1048V 0.10 deleterious(0.04) benign(0.209) TCGA-D3-A2JO-06 11 64417920 64417920 C T NRXN2 Missense_Mutation p.G1037R 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 11 66039207 66039207 C T RAB1B Intron 0.25 TCGA-D3-A2JO-06 11 66239884 66239884 C T PELI3 Silent p.S133S 0.15 TCGA-D3-A2JO-06 11 67942631 67942631 T G SUV420H1 Silent p.R133R 0.12 TCGA-D3-A2JO-06 11 68542792 68542792 G A CPT1A Missense_Mutation p.P523S 0.22 tolerated(0.24) benign(0.066) TCGA-D3-A2JO-06 11 772450 772450 A G PDDC1 Missense_Mutation p.F143L 0.23 tolerated(0.06) benign(0.11) TCGA-D3-A2JO-06 11 7817638 7817638 C T OR5P2 Silent p.L284L 0.24 TCGA-D3-A2JO-06 11 7960357 7960357 G A OR10A3 Silent p.A237A 0.33 TCGA-D3-A2JO-06 11 89880517 89880517 C T NAALAD2 Missense_Mutation p.H72Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 11 9171741 9171741 G A DENND5A Silent p.I874I 0.22 TCGA-D3-A2JO-06 11 93844902 93844902 G A HEPHL1 Missense_Mutation p.G1108S 0.24 tolerated(0.81) benign(0.003) TCGA-D3-A2JO-06 11 95826434 95826434 C G MAML2 Missense_Mutation p.G254A 0.36 possibly_damaging(0.753) TCGA-D3-A2JO-06 12 100897153 100897153 G A NR1H4 5'UTR 0.22 TCGA-D3-A2JO-06 12 101880332 101880332 G A SPIC Missense_Mutation p.G177E 0.25 deleterious(0.02) benign(0.108) TCGA-D3-A2JO-06 12 102796239 102796239 G A IGF1 3'UTR 0.19 TCGA-D3-A2JO-06 12 10568306 10568306 G A KLRC3 Silent p.I225I 0.39 TCGA-D3-A2JO-06 12 10603144 10603144 C T KLRC1 Silent p.G74G 0.29 TCGA-D3-A2JO-06 12 11139510 11139510 G A TAS2R50 5'UTR 0.19 TCGA-D3-A2JO-06 12 111744811 111744811 G A CUX2 Silent p.K315K 0.35 TCGA-D3-A2JO-06 12 111779730 111779730 G A CUX2 Missense_Mutation p.E1178K 0.18 deleterious(0.01) possibly_damaging(0.869) TCGA-D3-A2JO-06 12 113403667 113403667 C T OAS3 Missense_Mutation p.S841F 0.19 deleterious(0.02) possibly_damaging(0.796) TCGA-D3-A2JO-06 12 113537708 113537708 C T RASAL1 3'UTR 0.21 TCGA-D3-A2JO-06 12 114793661 114793661 G A TBX5 Silent p.T411T 0.21 TCGA-D3-A2JO-06 12 11546815 11546815 T C PRB2 Missense_Mutation p.N66S 0.09 tolerated(0.34) unknown(0) TCGA-D3-A2JO-06 12 117693801 117693801 G A NOS1 Missense_Mutation p.P858L 0.25 tolerated(0.3) benign(0.043) TCGA-D3-A2JO-06 12 117962863 117962863 G A KSR2 Silent p.L671L 0.19 TCGA-D3-A2JO-06 12 124114968 124114968 G A EIF2B1 Silent p.I76I 0.13 TCGA-D3-A2JO-06 12 124272363 124272363 G A DNAH10 Silent p.A417A 0.17 TCGA-D3-A2JO-06 12 124325997 124325997 G A DNAH10 Silent p.V1637V 0.20 TCGA-D3-A2JO-06 12 124816908 124816908 G C NCOR2 Missense_Mutation p.I2287M 0.09 probably_damaging(0.961) TCGA-D3-A2JO-06 12 14976271 14976271 G A C12orf60 Silent p.G134G 0.09 TCGA-D3-A2JO-06 12 15262001 15262001 G A RERG 3'UTR 0.14 TCGA-D3-A2JO-06 12 20833091 20833091 G A PDE3A Silent p.L1104L 0.12 TCGA-D3-A2JO-06 12 32945371 32945371 G A PKP2 Missense_Mutation p.S878F 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 12 40040150 40040150 C T C12orf40 Silent p.T74T 0.22 TCGA-D3-A2JO-06 12 41333180 41333180 C T CNTN1 Silent p.I424I 0.22 TCGA-D3-A2JO-06 12 4479756 4479756 T C FGF23 Missense_Mutation p.N170S 0.26 tolerated(0.16) benign(0) TCGA-D3-A2JO-06 12 4554735 4554735 A C FGF6 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D3-A2JO-06 12 46230571 46230571 C T ARID2 Nonsense_Mutation p.R274* 0.15 TCGA-D3-A2JO-06 12 46244796 46244796 G T ARID2 Nonsense_Mutation p.G964* 0.25 TCGA-D3-A2JO-06 12 4722853 4722853 G T DYRK4 Missense_Mutation p.M499I 0.25 tolerated_low_confidence(0.19) benign(0.005) TCGA-D3-A2JO-06 12 4736228 4736228 C T AKAP3 Missense_Mutation p.E614K 0.13 deleterious(0.04) possibly_damaging(0.908) TCGA-D3-A2JO-06 12 49434137 49434137 G C KMT2D Silent p.P2472P 0.18 TCGA-D3-A2JO-06 12 49938144 49938144 G A KCNH3 Missense_Mutation p.E390K 0.19 tolerated(0.26) benign(0.017) TCGA-D3-A2JO-06 12 51639802 51639802 C T SMAGP Missense_Mutation p.E73K 0.26 tolerated(0.17) possibly_damaging(0.631) TCGA-D3-A2JO-06 12 51864226 51864226 C T SLC4A8 Silent p.S525S 0.25 TCGA-D3-A2JO-06 12 52788966 52788966 G A KRT82 Silent p.S445S 0.43 TCGA-D3-A2JO-06 12 53292506 53292506 C T KRT8 Missense_Mutation p.E415K 0.16 deleterious(0.03) benign(0.053) TCGA-D3-A2JO-06 12 53823689 53823689 C T AMHR2 Silent p.L405L 0.21 TCGA-D3-A2JO-06 12 56334205 56334205 G A DGKA Nonsense_Mutation p.W302* 0.29 TCGA-D3-A2JO-06 12 56349168 56349168 T A PMEL Splice_Site p.X588_splice 0.22 TCGA-D3-A2JO-06 12 57406635 57406635 C T TAC3 Missense_Mutation p.G88E 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JO-06 12 57881788 57881788 C T MARS 5'UTR 0.17 TCGA-D3-A2JO-06 12 59307766 59307766 G A LRIG3 Missense_Mutation p.S127F 0.12 tolerated(0.41) probably_damaging(0.93) TCGA-D3-A2JO-06 12 73015511 73015511 G A TRHDE Nonsense_Mutation p.W840* 0.24 TCGA-D3-A2JO-06 12 79689912 79689912 C T SYT1 Missense_Mutation p.P180S 0.26 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JO-06 12 79813046 79813046 G A SYT1 Intron 0.22 TCGA-D3-A2JO-06 12 8376701 8376701 C T FAM90A1 Silent p.G78G 0.09 TCGA-D3-A2JO-06 12 8376702 8376702 C T FAM90A1 Missense_Mutation p.G78E 0.08 deleterious(0.04) benign(0.187) TCGA-D3-A2JO-06 12 86377306 86377306 C T MGAT4C Missense_Mutation p.R97K 0.22 tolerated(0.55) benign(0.015) TCGA-D3-A2JO-06 12 99640444 99640444 G A ANKS1B Missense_Mutation p.P652L 0.16 tolerated(0.17) benign(0.035) TCGA-D3-A2JO-06 13 114287495 114287495 C T TFDP1 Silent p.V123V 0.23 TCGA-D3-A2JO-06 13 25144805 25144805 C T RP11-556N21.1 RNA 0.24 TCGA-D3-A2JO-06 13 28631575 28631575 C T FLT3 Silent p.L131L 0.23 TCGA-D3-A2JO-06 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.18 tolerated(0.2) benign(0.002) TCGA-D3-A2JO-06 13 29599311 29599311 C T MTUS2 Missense_Mutation p.P169L 0.22 deleterious(0) possibly_damaging(0.73) TCGA-D3-A2JO-06 13 37016814 37016814 G A CCNA1 3'UTR 0.21 TCGA-D3-A2JO-06 13 60737783 60737783 C T DIAPH3 Missense_Mutation p.G40S 0.15 tolerated_low_confidence(0.14) benign(0.341) TCGA-D3-A2JO-06 13 70371071 70371071 C T KLHL1 Missense_Mutation p.D480N 0.18 tolerated(0.12) possibly_damaging(0.845) TCGA-D3-A2JO-06 13 73409495 73409495 A G PIBF1 Silent p.E404E 0.26 TCGA-D3-A2JO-06 13 78177246 78177246 C T SCEL Missense_Mutation p.P358L 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.869) TCGA-D3-A2JO-06 13 86369351 86369351 G A SLITRK6 Silent p.F431F 0.21 TCGA-D3-A2JO-06 13 99020412 99020412 C A FARP1 Missense_Mutation p.P121T 0.22 tolerated(0.2) possibly_damaging(0.549) TCGA-D3-A2JO-06 14 101434460 101434460 G A SNORD114-11 RNA 0.13 TCGA-D3-A2JO-06 14 103969661 103969661 C T MARK3 3'UTR 0.33 TCGA-D3-A2JO-06 14 105353579 105353579 C T CEP170B Silent p.V1001V 0.14 TCGA-D3-A2JO-06 14 106311869 106311869 C T IGHD Missense_Mutation p.S48N 0.15 tolerated_low_confidence(0.49) benign(0.008) TCGA-D3-A2JO-06 14 20389309 20389309 C T OR4K5 Missense_Mutation p.P182S 0.10 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JO-06 14 20711921 20711921 C T OR11H4 Missense_Mutation p.S324L 0.09 deleterious_low_confidence(0.03) benign(0.232) TCGA-D3-A2JO-06 14 20854292 20854292 G A TEP1 Missense_Mutation p.S975F 0.34 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JO-06 14 22134223 22134223 G A OR4E2 Silent p.T309T 0.27 TCGA-D3-A2JO-06 14 22280067 22280067 C T TRAV9-1 Missense_Mutation p.R86C 0.32 tolerated(0.2) benign(0.019) TCGA-D3-A2JO-06 14 22631733 22631733 G A TRAV29DV5 Missense_Mutation p.G109R 0.23 tolerated(0.07) benign(0.33) TCGA-D3-A2JO-06 14 22670507 22670507 C T TRAV26-2 Silent p.L11L 0.19 TCGA-D3-A2JO-06 14 22931924 22931924 G A TRDC Missense_Mutation p.%3D 0.38 TCGA-D3-A2JO-06 14 23888777 23888777 C T MYH7 Missense_Mutation p.M1256I 0.23 tolerated(0.08) benign(0.115) TCGA-D3-A2JO-06 14 24785488 24785488 C G LTB4R Missense_Mutation p.R211G 0.18 tolerated(0.16) possibly_damaging(0.782) TCGA-D3-A2JO-06 14 24885107 24885107 C T NYNRIN Silent p.L1384L 0.25 TCGA-D3-A2JO-06 14 50089148 50089148 C T MGAT2 Missense_Mutation p.P388S 0.14 tolerated(0.31) possibly_damaging(0.854) TCGA-D3-A2JO-06 14 50089149 50089149 C T MGAT2 Missense_Mutation p.P388L 0.18 deleterious(0) possibly_damaging(0.899) TCGA-D3-A2JO-06 14 63316527 63316527 G A KCNH5 Silent p.F471F 0.16 TCGA-D3-A2JO-06 14 67490378 67490378 A G GPHN Missense_Mutation p.N331S 0.23 tolerated(0.22) probably_damaging(0.99) TCGA-D3-A2JO-06 14 74206625 74206625 G A ELMSAN1 Silent p.P29P 0.19 TCGA-D3-A2JO-06 14 75248256 75248256 C T YLPM1 Nonsense_Mutation p.Q504* 0.24 TCGA-D3-A2JO-06 14 75249025 75249025 C T YLPM1 Missense_Mutation p.P760L 0.15 probably_damaging(0.996) TCGA-D3-A2JO-06 14 78043202 78043202 C G SPTLC2 Missense_Mutation p.G180A 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 14 90429640 90429640 C T TDP1 Missense_Mutation p.S61L 0.29 deleterious_low_confidence(0.01) benign(0.118) TCGA-D3-A2JO-06 14 94158199 94158199 G A UNC79 Silent p.Q2321Q 0.32 TCGA-D3-A2JO-06 14 96792033 96792033 G A ATG2B Missense_Mutation p.S797L 0.34 tolerated(0.36) benign(0.034) TCGA-D3-A2JO-06 14 96917817 96917817 G A AK7 Silent p.E336E 0.32 TCGA-D3-A2JO-06 14 99879362 99879362 G A SETD3 Missense_Mutation p.P259S 0.11 deleterious(0) possibly_damaging(0.799) TCGA-D3-A2JO-06 15 22382676 22382676 C T OR4N4 Silent p.F68F 0.09 TCGA-D3-A2JO-06 15 24922598 24922598 C T NPAP1 Silent p.S528S 0.22 TCGA-D3-A2JO-06 15 25464012 25464012 C T SNORD115-28 5'Flank 0.29 TCGA-D3-A2JO-06 15 35192853 35192853 T C AQR Missense_Mutation p.E738G 0.24 tolerated(0.32) benign(0.001) TCGA-D3-A2JO-06 15 41813125 41813125 G A RPAP1 Silent p.L1087L 0.33 TCGA-D3-A2JO-06 15 41819162 41819162 G A RPAP1 Silent p.P617P 0.32 TCGA-D3-A2JO-06 15 42302357 42302357 C T PLA2G4E Intron 0.16 TCGA-D3-A2JO-06 15 42523438 42523438 G A TMEM87A Silent p.S361S 0.15 TCGA-D3-A2JO-06 15 43045125 43045125 G A TTBK2 Silent p.L773L 0.31 TCGA-D3-A2JO-06 15 43317039 43317039 C T UBR1 Silent p.G909G 0.23 TCGA-D3-A2JO-06 15 43822318 43822318 C G MAP1A Missense_Mutation p.Q2770E 0.10 probably_damaging(0.979) TCGA-D3-A2JO-06 15 45365749 45365749 A C SORD 3'UTR 0.06 TCGA-D3-A2JO-06 15 45965918 45965918 C T SQRDL Silent p.I191I 0.11 TCGA-D3-A2JO-06 15 49426144 49426144 G A COPS2 Missense_Mutation p.P300S 0.17 deleterious(0.02) benign(0.206) TCGA-D3-A2JO-06 15 50519297 50519297 A T SLC27A2 Missense_Mutation p.Y460F 0.37 tolerated(0.08) benign(0.319) TCGA-D3-A2JO-06 15 50782595 50782595 C T USP8 Missense_Mutation p.P703S 0.28 tolerated(0.1) probably_damaging(0.986) TCGA-D3-A2JO-06 15 57731026 57731026 C T CGNL1 Missense_Mutation p.P277S 0.19 deleterious(0.02) possibly_damaging(0.601) TCGA-D3-A2JO-06 15 69238016 69238016 C T SPESP1 Missense_Mutation p.P48L 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 15 69318985 69318985 G A NOX5 Silent p.V56V 0.21 TCGA-D3-A2JO-06 15 69335023 69335023 C T NOX5 Missense_Mutation p.R509W 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A2JO-06 15 69730701 69730701 A C KIF23 Missense_Mutation p.E557A 0.25 deleterious(0) possibly_damaging(0.824) TCGA-D3-A2JO-06 15 80414107 80414107 A G ZFAND6 Missense_Mutation p.S70G 0.12 tolerated(0.14) benign(0) TCGA-D3-A2JO-06 15 80429862 80429862 C T ZFAND6 Silent p.H173H 0.23 TCGA-D3-A2JO-06 15 94841934 94841934 G A MCTP2 Missense_Mutation p.G147E 0.21 tolerated(0.54) benign(0.003) TCGA-D3-A2JO-06 16 10997685 10997685 C T CIITA Silent p.F290F 0.23 TCGA-D3-A2JO-06 16 11970009 11970009 G A GSPT1 Silent p.S542S 0.26 TCGA-D3-A2JO-06 16 1396267 1396267 G A BAIAP3 Missense_Mutation p.G835R 0.32 tolerated(0.09) possibly_damaging(0.544) TCGA-D3-A2JO-06 16 16271311 16271311 C T ABCC6 Missense_Mutation p.G863E 0.16 tolerated(0.66) benign(0.005) TCGA-D3-A2JO-06 16 20570606 20570606 G A ACSM2B Missense_Mutation p.P114L 0.11 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JO-06 16 21011627 21011627 C T DNAH3 Missense_Mutation p.D2114N 0.21 tolerated(0.58) probably_damaging(0.987) TCGA-D3-A2JO-06 16 21078638 21078638 C T DNAH3 Missense_Mutation p.D1162N 0.23 tolerated(0.48) benign(0.003) TCGA-D3-A2JO-06 16 21698898 21698898 A T OTOA Silent p.S188S 0.26 TCGA-D3-A2JO-06 16 23226678 23226678 C T SCNN1G Missense_Mutation p.P613L 0.17 tolerated(0.36) benign(0) TCGA-D3-A2JO-06 16 23504758 23504758 G A GGA2 Missense_Mutation p.H92Y 0.24 deleterious(0.04) benign(0.012) TCGA-D3-A2JO-06 16 2488085 2488085 C T CCNF Silent p.S185S 0.23 TCGA-D3-A2JO-06 16 2493647 2493647 C T CCNF Intron 0.12 TCGA-D3-A2JO-06 16 25268074 25268074 T C ZKSCAN2 Silent p.K125K 0.24 TCGA-D3-A2JO-06 16 31284749 31284749 C T ITGAM Silent p.I256I 0.12 TCGA-D3-A2JO-06 16 46943703 46943703 C T GPT2 Silent p.A228A 0.27 TCGA-D3-A2JO-06 16 4909162 4909162 T C UBN1 Splice_Site p.X189_splice 0.31 TCGA-D3-A2JO-06 16 50667404 50667404 C T NKD1 Silent p.I375I 0.25 TCGA-D3-A2JO-06 16 56396419 56396419 C T AMFR 3'UTR 0.24 TCGA-D3-A2JO-06 16 57689336 57689336 A G GPR56 Missense_Mutation p.Y265C 0.27 deleterious(0.01) possibly_damaging(0.894) TCGA-D3-A2JO-06 16 66947440 66947440 C T CDH16 Missense_Mutation p.G286E 0.15 deleterious(0.03) probably_damaging(1) TCGA-D3-A2JO-06 16 67327569 67327569 G A KCTD19 Missense_Mutation p.P699L 0.14 tolerated_low_confidence(0.8) benign(0.001) TCGA-D3-A2JO-06 16 67327570 67327570 G A KCTD19 Missense_Mutation p.P699S 0.15 tolerated_low_confidence(0.55) benign(0.001) TCGA-D3-A2JO-06 16 70166093 70166093 G A PDPR Nonsense_Mutation p.W296* 0.11 TCGA-D3-A2JO-06 16 74508513 74508513 C T GLG1 Silent p.Q661Q 0.16 TCGA-D3-A2JO-06 16 76532481 76532481 T C CNTNAP4 Missense_Mutation p.L679S 0.18 deleterious(0.01) benign(0.017) TCGA-D3-A2JO-06 16 77389870 77389870 G A ADAMTS18 Missense_Mutation p.S476F 0.13 tolerated(0.1) benign(0.076) TCGA-D3-A2JO-06 16 78005767 78005767 G A VAT1L Silent p.R366R 0.23 TCGA-D3-A2JO-06 16 81211505 81211505 G A PKD1L2 Intron 0.13 TCGA-D3-A2JO-06 16 81253869 81253869 C T PKD1L2 Missense_Mutation p.R36K 0.25 tolerated(0.12) benign(0.076) TCGA-D3-A2JO-06 16 82033492 82033492 C T SDR42E1 Missense_Mutation p.G136R 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A2JO-06 16 84456106 84456106 C T ATP2C2 Silent p.I245I 0.10 TCGA-D3-A2JO-06 16 87453455 87453455 A G ZCCHC14 Silent p.L190L 0.11 TCGA-D3-A2JO-06 16 89294742 89294742 C T ZNF778 Silent p.F654F 0.26 TCGA-D3-A2JO-06 16 89350500 89350500 T G ANKRD11 Missense_Mutation p.Y817S 0.11 probably_damaging(0.925) TCGA-D3-A2JO-06 16 89662951 89662951 G A CPNE7 Silent p.E608E 0.32 TCGA-D3-A2JO-06 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.26 tolerated(0.12) benign(0.252) TCGA-D3-A2JO-06 17 10411857 10411857 C T MYH1 Missense_Mutation p.G574S 0.25 deleterious(0.02) possibly_damaging(0.834) TCGA-D3-A2JO-06 17 10435026 10435026 G A MYH2 Missense_Mutation p.A874V 0.36 tolerated(0.07) possibly_damaging(0.611) TCGA-D3-A2JO-06 17 11687793 11687793 C T DNAH9 Silent p.F2666F 0.25 TCGA-D3-A2JO-06 17 12666442 12666442 G C MYOCD Missense_Mutation p.K814N 0.11 tolerated(0.1) probably_damaging(0.99) TCGA-D3-A2JO-06 17 15234598 15234598 G A TEKT3 Missense_Mutation p.S102F 0.21 deleterious(0.02) benign(0.35) TCGA-D3-A2JO-06 17 1649093 1649093 T C SERPINF2 Missense_Mutation p.M86T 0.29 tolerated(0.06) possibly_damaging(0.781) TCGA-D3-A2JO-06 17 18004832 18004832 C T DRG2 Silent p.F219F 0.11 TCGA-D3-A2JO-06 17 18023624 18023624 C T MYO15A Missense_Mutation p.P504S 0.32 possibly_damaging(0.641) TCGA-D3-A2JO-06 17 27185489 27185489 C T ERAL1 Silent p.V232V 0.14 TCGA-D3-A2JO-06 17 29701105 29701105 G A NF1 Missense_Mutation p.A2818T 0.09 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D3-A2JO-06 17 32614124 32614124 C A CCL11 Missense_Mutation p.P29Q 0.11 deleterious(0.01) benign(0.398) TCGA-D3-A2JO-06 17 3343529 3343529 G A SPATA22 Missense_Mutation p.S335F 0.26 deleterious(0) probably_damaging(0.98) TCGA-D3-A2JO-06 17 33513459 33513459 G A UNC45B Missense_Mutation p.E893K 0.28 deleterious(0) possibly_damaging(0.844) TCGA-D3-A2JO-06 17 33513641 33513641 T C UNC45B 3'UTR 0.10 TCGA-D3-A2JO-06 17 36093634 36093634 G A HNF1B Missense_Mutation p.S242F 0.15 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JO-06 17 36484409 36484409 C T GPR179 Silent p.V1681V 0.30 TCGA-D3-A2JO-06 17 3788911 3788911 T A CAMKK1 Missense_Mutation p.D24V 0.15 deleterious_low_confidence(0.01) benign(0.206) TCGA-D3-A2JO-06 17 38904547 38904547 C T KRT25 Silent p.E445E 0.11 TCGA-D3-A2JO-06 17 39197108 39197108 G A KRTAP1-1 3'UTR 0.24 TCGA-D3-A2JO-06 17 39775938 39775938 C T KRT17 Missense_Mutation p.V403M 0.12 tolerated(0.12) benign(0.062) TCGA-D3-A2JO-06 17 39964117 39964117 G A LEPREL4 Silent p.P352P 0.18 TCGA-D3-A2JO-06 17 41003657 41003657 G A AOC3 Silent p.V99V 0.10 TCGA-D3-A2JO-06 17 41020068 41020068 G A AOC4P RNA 0.18 TCGA-D3-A2JO-06 17 42328615 42328615 G A SLC4A1 Missense_Mutation p.S856F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 17 43246746 43246746 C T HEXIM2 Missense_Mutation p.T144I 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 17 45368547 45368547 C T ITGB3 Intron 0.21 TCGA-D3-A2JO-06 17 46239846 46239846 G A SKAP1 Silent p.I321I 0.22 TCGA-D3-A2JO-06 17 46926728 46926728 C T CALCOCO2 Nonsense_Mutation p.Q202* 0.15 TCGA-D3-A2JO-06 17 51900399 51900399 C T KIF2B Missense_Mutation p.A2V 0.16 deleterious_low_confidence(0) possibly_damaging(0.612) TCGA-D3-A2JO-06 17 54230835 54230835 C T ANKFN1 5'Flank 0.16 TCGA-D3-A2JO-06 17 55027324 55027324 C A COIL Missense_Mutation p.V427L 0.22 tolerated(1) benign(0) TCGA-D3-A2JO-06 17 55027336 55027336 C T COIL Missense_Mutation p.V423I 0.22 tolerated(0.68) benign(0.013) TCGA-D3-A2JO-06 17 56423632 56423632 G A SUPT4H1 Missense_Mutation p.S110F 0.11 deleterious(0.03) possibly_damaging(0.761) TCGA-D3-A2JO-06 17 59557581 59557581 G A TBX4 Missense_Mutation p.G308R 0.30 deleterious(0) possibly_damaging(0.897) TCGA-D3-A2JO-06 17 60030357 60030357 G A MED13 Missense_Mutation p.S2029F 0.14 deleterious(0) possibly_damaging(0.801) TCGA-D3-A2JO-06 17 61564022 61564022 A G ACE Missense_Mutation p.I721M 0.39 tolerated(0.11) possibly_damaging(0.463) TCGA-D3-A2JO-06 17 61886300 61886300 T A DDX42 Missense_Mutation p.C382S 0.32 tolerated(0.06) possibly_damaging(0.905) TCGA-D3-A2JO-06 17 62135310 62135310 G A ERN1 Missense_Mutation p.T417I 0.29 tolerated(0.2) benign(0.081) TCGA-D3-A2JO-06 18 12325656 12325656 A G TUBB6 Missense_Mutation p.T290A 0.29 deleterious_low_confidence(0.01) benign(0.004) TCGA-D3-A2JO-06 18 19209027 19209038 AGGAAGAGGCAG - SNRPD1 In_Frame_Del p.R112_G115del 0.09 TCGA-D3-A2JO-06 18 2775864 2775864 C T SMCHD1 Missense_Mutation p.R1770C 0.18 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JO-06 18 28598176 28598176 C T DSC3 Missense_Mutation p.R375Q 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A2JO-06 18 28609493 28609493 G A DSC3 Silent p.F152F 0.19 TCGA-D3-A2JO-06 18 28648310 28648310 C T DSC2 Intron 0.21 TCGA-D3-A2JO-06 18 28710796 28710796 G A DSC1 Intron 0.13 TCGA-D3-A2JO-06 18 30093586 30093586 C T WBP11P1 RNA 0.12 TCGA-D3-A2JO-06 18 31320396 31320396 C T ASXL3 Missense_Mutation p.P1010S 0.25 probably_damaging(0.999) TCGA-D3-A2JO-06 18 346919 346919 G A COLEC12 Nonsense_Mutation p.Q235* 0.30 TCGA-D3-A2JO-06 18 44560940 44560940 C T TCEB3B Silent p.Q232Q 0.11 TCGA-D3-A2JO-06 18 47438449 47438449 G A MYO5B Silent p.L729L 0.11 TCGA-D3-A2JO-06 18 56202686 56202686 C G ALPK2 Missense_Mutation p.R1578P 0.10 tolerated(0.11) benign(0.008) TCGA-D3-A2JO-06 18 57147471 57147471 C T CCBE1 Splice_Site p.X71_splice 0.34 TCGA-D3-A2JO-06 18 61468108 61468108 G A SERPINB7 Silent p.G202G 0.14 TCGA-D3-A2JO-06 18 61600313 61600313 T G SERPINB10 Missense_Mutation p.M222R 0.08 tolerated(0.31) possibly_damaging(0.702) TCGA-D3-A2JO-06 18 67727214 67727214 T C RTTN Silent p.K1604K 0.50 TCGA-D3-A2JO-06 18 74637500 74637500 C T ZNF236 Silent p.A1337A 0.45 TCGA-D3-A2JO-06 19 10259681 10259681 G A DNMT1 Missense_Mutation p.P867S 0.12 tolerated(0.79) benign(0.037) TCGA-D3-A2JO-06 19 11609136 11609136 G A ZNF653 Silent p.V106V 0.22 TCGA-D3-A2JO-06 19 1231091 1231091 G A C19orf26 Missense_Mutation p.S388L 0.18 deleterious_low_confidence(0.02) benign(0.053) TCGA-D3-A2JO-06 19 12865695 12865695 T C BEST2 Silent p.F162F 0.29 TCGA-D3-A2JO-06 19 13007022 13007022 C T GCDH Silent p.I213I 0.17 TCGA-D3-A2JO-06 19 13186433 13186433 C T NFIX Silent p.S301S 0.23 TCGA-D3-A2JO-06 19 13988132 13988132 G A NANOS3 Missense_Mutation p.E24K 0.23 tolerated(0.06) benign(0.047) TCGA-D3-A2JO-06 19 14000806 14000806 G A C19orf57 Missense_Mutation p.P288L 0.17 tolerated(0.46) probably_damaging(0.958) TCGA-D3-A2JO-06 19 16034789 16034789 G A CYP4F11 Missense_Mutation p.P251S 0.24 tolerated(0.29) benign(0.032) TCGA-D3-A2JO-06 19 16902224 16902224 C T NWD1 Missense_Mutation p.P1002S 0.23 tolerated(0.19) benign(0.139) TCGA-D3-A2JO-06 19 17361183 17361183 C T USHBP1 Missense_Mutation p.E655K 0.16 deleterious(0.01) possibly_damaging(0.612) TCGA-D3-A2JO-06 19 18100600 18100600 G A KCNN1 Missense_Mutation p.D416N 0.24 tolerated(0.22) benign(0.057) TCGA-D3-A2JO-06 19 22171599 22171599 T C ZNF208 Missense_Mutation p.N39S 0.16 deleterious(0.03) benign(0.183) TCGA-D3-A2JO-06 19 22780198 22780198 G A RN7SL860P 5'Flank 0.19 TCGA-D3-A2JO-06 19 23159845 23159845 C T ZNF728 Silent p.V98V 0.25 TCGA-D3-A2JO-06 19 2994037 2994037 G A TLE6 Missense_Mutation p.G520R 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JO-06 19 33490582 33490582 C T RHPN2 Missense_Mutation p.E379K 0.19 deleterious(0.04) probably_damaging(1) TCGA-D3-A2JO-06 19 3542865 3542866 - T MFSD12 Frame_Shift_Ins p.A511Sfs*18 0.22 TCGA-D3-A2JO-06 19 36940055 36940055 G A ZNF566 Missense_Mutation p.H362Y 0.29 deleterious(0) probably_damaging(0.976) TCGA-D3-A2JO-06 19 3736220 3736220 G A TJP3 Silent p.R404R 0.32 TCGA-D3-A2JO-06 19 3762665 3762665 G A MRPL54 5'UTR 0.27 TCGA-D3-A2JO-06 19 38994938 38994938 G A RYR1 Missense_Mutation p.E2669K 0.09 benign(0.379) TCGA-D3-A2JO-06 19 39001302 39001302 C T RYR1 Silent p.I3001I 0.22 TCGA-D3-A2JO-06 19 41510274 41510274 G A CYP2B6 Missense_Mutation p.G136E 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JO-06 19 4323568 4323568 G A FSD1 Silent p.Q473Q 0.14 TCGA-D3-A2JO-06 19 43349424 43349424 G A PSG10P RNA 0.25 TCGA-D3-A2JO-06 19 43411155 43411155 G A PSG6 Missense_Mutation p.H387Y 0.33 tolerated(0.08) benign(0.268) TCGA-D3-A2JO-06 19 43433850 43433850 G A PSG7 Silent p.I151I 0.36 TCGA-D3-A2JO-06 19 43519471 43519471 C T PSG11 Missense_Mutation p.G254E 0.24 deleterious(0.01) possibly_damaging(0.469) TCGA-D3-A2JO-06 19 45375346 45375346 A G PVRL2 Missense_Mutation p.K239E 0.32 tolerated(0.36) benign(0.128) TCGA-D3-A2JO-06 19 45381990 45381990 G T PVRL2 Intron 0.45 TCGA-D3-A2JO-06 19 45515359 45515359 C T RELB Missense_Mutation p.P110L 0.26 deleterious(0) benign(0.016) TCGA-D3-A2JO-06 19 46326660 46326660 G A SYMPK Silent p.F890F 0.36 TCGA-D3-A2JO-06 19 47824123 47824123 C T C5AR1 3'UTR 0.36 TCGA-D3-A2JO-06 19 48253522 48253522 C T GLTSCR2 Missense_Mutation p.S126F 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 19 50100856 50100856 C T PRR12 Silent p.F1088F 0.18 TCGA-D3-A2JO-06 19 50462043 50462043 C T SIGLEC11 Missense_Mutation p.G407E 0.26 tolerated(0.06) benign(0.188) TCGA-D3-A2JO-06 19 50462044 50462044 C T SIGLEC11 Missense_Mutation p.G407R 0.25 tolerated(0.19) benign(0.135) TCGA-D3-A2JO-06 19 51129210 51129210 G A SYT3 Missense_Mutation p.T449I 0.19 deleterious(0.05) possibly_damaging(0.825) TCGA-D3-A2JO-06 19 51323615 51323615 T C KLK1 Silent p.P97P 0.10 TCGA-D3-A2JO-06 19 51631291 51631291 C T SIGLEC9 Silent p.F367F 0.34 TCGA-D3-A2JO-06 19 51650068 51650068 C T SIGLEC7 Missense_Mutation p.T362I 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-D3-A2JO-06 19 52031079 52031079 C T SIGLEC6 Silent p.V370V 0.17 TCGA-D3-A2JO-06 19 52376878 52376878 T C ZNF577 Missense_Mutation p.K122R 0.11 tolerated(0.32) benign(0.018) TCGA-D3-A2JO-06 19 52938438 52938438 G A ZNF534 Missense_Mutation p.E96K 0.17 tolerated(0.37) benign(0.032) TCGA-D3-A2JO-06 19 53762839 53762839 C T VN1R2 3'UTR 0.23 TCGA-D3-A2JO-06 19 54204491 54204491 G A MIR520B RNA 0.29 TCGA-D3-A2JO-06 19 54782925 54782925 G A LILRB2 Missense_Mutation p.P233S 0.29 tolerated(0.11) possibly_damaging(0.718) TCGA-D3-A2JO-06 19 54818743 54818743 C T LILRA5 Silent p.Q285Q 0.40 TCGA-D3-A2JO-06 19 55045023 55045023 C T KIR3DX1 Missense_Mutation p.S48F 0.24 tolerated(0.08) possibly_damaging(0.746) TCGA-D3-A2JO-06 19 55107358 55107358 G A LILRA1 Missense_Mutation p.E306K 0.14 tolerated(0.09) benign(0.179) TCGA-D3-A2JO-06 19 55148379 55148379 G A LILRB1 3'UTR 0.32 TCGA-D3-A2JO-06 19 55687094 55687094 C T SYT5 Missense_Mutation p.E175K 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 19 56459471 56459471 C T NLRP8 Missense_Mutation p.T68I 0.38 tolerated(0.33) benign(0.41) TCGA-D3-A2JO-06 19 5648043 5648043 C T SAFB Missense_Mutation p.S209F 0.33 tolerated(0.05) probably_damaging(0.947) TCGA-D3-A2JO-06 19 56565173 56565173 G A NLRP5 Missense_Mutation p.G1100R 0.20 deleterious(0.05) benign(0.176) TCGA-D3-A2JO-06 19 5668275 5668275 C T SAFB Silent p.S909S 0.20 TCGA-D3-A2JO-06 19 57175842 57175842 C G ZNF835 Missense_Mutation p.R242P 0.38 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JO-06 19 57646923 57646923 G A ZIM3 Missense_Mutation p.S261F 0.31 tolerated(0.1) benign(0.007) TCGA-D3-A2JO-06 19 58117462 58117462 C T ZNF530 Missense_Mutation p.P190L 0.21 tolerated(0.48) benign(0.063) TCGA-D3-A2JO-06 19 7166349 7166349 T A INSR Silent p.V559V 0.10 TCGA-D3-A2JO-06 19 7570468 7570468 G C C19orf45 Missense_Mutation p.G321R 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 19 8486881 8486881 C T MARCH2 Missense_Mutation p.R53C 0.23 deleterious(0.05) possibly_damaging(0.724) TCGA-D3-A2JO-06 19 8661001 8661001 G A ADAMTS10 Silent p.F431F 0.23 TCGA-D3-A2JO-06 19 9056883 9056883 G A MUC16 Missense_Mutation p.S10188F 0.12 benign(0.039) TCGA-D3-A2JO-06 19 9060338 9060338 C T MUC16 Missense_Mutation p.M9036I 0.11 unknown(0) TCGA-D3-A2JO-06 19 9065219 9065219 G A MUC16 Silent p.S7409S 0.20 TCGA-D3-A2JO-06 19 9065230 9065230 G A MUC16 Missense_Mutation p.P7406S 0.21 unknown(0) TCGA-D3-A2JO-06 19 9067930 9067930 C T MUC16 Missense_Mutation p.E6506K 0.23 unknown(0) TCGA-D3-A2JO-06 19 9083352 9083352 C T MUC16 Missense_Mutation p.M2821I 0.21 unknown(0) TCGA-D3-A2JO-06 1 101705320 101705320 C T S1PR1 Silent p.I260I 0.28 TCGA-D3-A2JO-06 1 103491840 103491840 C T COL11A1 Missense_Mutation p.E277K 0.20 benign(0.118) TCGA-D3-A2JO-06 1 110217558 110217558 C T GSTM2 3'UTR 0.24 TCGA-D3-A2JO-06 1 11115049 11115049 G C SRM Silent p.A286A 0.14 TCGA-D3-A2JO-06 1 111725439 111725439 C T CEPT1 Missense_Mutation p.P289S 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A2JO-06 1 114952902 114952902 G A TRIM33 Silent p.L700L 0.26 TCGA-D3-A2JO-06 1 115161026 115161026 C T DENND2C Silent p.K435K 0.35 TCGA-D3-A2JO-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.34 deleterious(0.01) benign(0.045) TCGA-D3-A2JO-06 1 11579925 11579925 T C PTCHD2 Missense_Mutation p.W730R 0.12 tolerated(0.63) probably_damaging(0.999) TCGA-D3-A2JO-06 1 120300003 120300003 G A HMGCS2 Silent p.P303P 0.47 TCGA-D3-A2JO-06 1 1249237 1249237 A G CPSF3L Missense_Mutation p.Y284H 0.08 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JO-06 1 12908049 12908049 C T HNRNPCL1 Missense_Mutation p.D32N 0.10 deleterious(0) possibly_damaging(0.512) TCGA-D3-A2JO-06 1 12954580 12954580 G A PRAMEF10 Missense_Mutation p.R235C 0.27 deleterious(0.02) benign(0.031) TCGA-D3-A2JO-06 1 146639400 146639400 A G PRKAB2 Missense_Mutation p.V90A 0.38 deleterious(0) probably_damaging(0.978) TCGA-D3-A2JO-06 1 155254528 155254528 C T HCN3 Missense_Mutation p.R357W 0.48 deleterious(0) probably_damaging(0.94) TCGA-D3-A2JO-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.37 deleterious(0.05) benign(0.049) TCGA-D3-A2JO-06 1 158517829 158517829 G A OR6Y1 Missense_Mutation p.P23S 0.51 tolerated(0.3) benign(0.021) TCGA-D3-A2JO-06 1 158670152 158670152 G A OR6K2 Silent p.L97L 0.44 TCGA-D3-A2JO-06 1 159923972 159923972 C T SLAMF9 5'UTR 0.47 TCGA-D3-A2JO-06 1 169564052 169564052 C T SELP Missense_Mutation p.G722E 0.54 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A2JO-06 1 176175770 176175770 G A RFWD2 Silent p.L115L 0.18 TCGA-D3-A2JO-06 1 176734861 176734861 C T PAPPA2 Missense_Mutation p.A1404V 0.30 deleterious(0.04) benign(0.006) TCGA-D3-A2JO-06 1 182794924 182794924 C T NPL Silent p.I249I 0.36 TCGA-D3-A2JO-06 1 186332521 186332521 G C TPR Missense_Mutation p.L162V 0.09 benign(0.364) TCGA-D3-A2JO-06 1 196796039 196796039 A G CFHR1 Missense_Mutation p.I112V 0.08 tolerated(0.42) benign(0.185) TCGA-D3-A2JO-06 1 196967338 196967338 C T CFHR5 Missense_Mutation p.H351Y 0.64 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 1 197073111 197073111 G A ASPM Missense_Mutation p.S1757L 0.55 tolerated(1) benign(0.03) TCGA-D3-A2JO-06 1 20072026 20072026 G A TMCO4 Silent p.Y292Y 0.18 TCGA-D3-A2JO-06 1 201839936 201839936 C T IPO9 Missense_Mutation p.R787C 0.49 deleterious(0) probably_damaging(0.973) TCGA-D3-A2JO-06 1 207135760 207135760 C T FCAMR Nonsense_Mutation p.W150* 0.62 TCGA-D3-A2JO-06 1 224482016 224482016 G A NVL Silent p.F426F 0.49 TCGA-D3-A2JO-06 1 229678046 229678046 A G ABCB10 Missense_Mutation p.Y332H 0.64 deleterious(0) probably_damaging(0.987) TCGA-D3-A2JO-06 1 235907411 235907411 T G LYST Silent p.V2673V 0.11 TCGA-D3-A2JO-06 1 24144068 24144068 G A HMGCL Silent p.I50I 0.15 TCGA-D3-A2JO-06 1 24384029 24384029 C T MYOM3 Missense_Mutation p.R1380Q 0.21 tolerated(0.29) possibly_damaging(0.472) TCGA-D3-A2JO-06 1 245851523 245851523 C T KIF26B Silent p.R1746R 0.17 TCGA-D3-A2JO-06 1 246810539 246810539 A G CNST Missense_Mutation p.T346A 0.42 tolerated(1) benign(0) TCGA-D3-A2JO-06 1 26316033 26316033 G A PAFAH2 Silent p.P50P 0.40 TCGA-D3-A2JO-06 1 27057924 27057924 C T ARID1A Silent p.H544H 0.27 TCGA-D3-A2JO-06 1 27878356 27878356 G T AHDC1 Missense_Mutation p.P91T 0.14 tolerated_low_confidence(1) possibly_damaging(0.803) TCGA-D3-A2JO-06 1 29542575 29542575 G C MECR Silent p.G116G 0.16 TCGA-D3-A2JO-06 1 3511917 3511917 C T MEGF6 Missense_Mutation p.E121K 0.12 tolerated(0.84) benign(0.001) TCGA-D3-A2JO-06 1 3542403 3542403 A G TPRG1L Silent p.V140V 0.20 TCGA-D3-A2JO-06 1 3542404 3542404 G A TPRG1L Missense_Mutation p.D141N 0.22 tolerated(0.14) probably_damaging(0.995) TCGA-D3-A2JO-06 1 38227363 38227363 G A EPHA10 Silent p.F188F 0.27 TCGA-D3-A2JO-06 1 40881029 40881029 C T SMAP2 Silent p.S219S 0.23 TCGA-D3-A2JO-06 1 43108260 43108260 G A CCDC30 Silent p.T585T 0.15 TCGA-D3-A2JO-06 1 57415232 57415232 T C C8B Missense_Mutation p.H287R 0.27 tolerated(0.32) benign(0.014) TCGA-D3-A2JO-06 1 62393461 62393461 T A INADL Missense_Mutation p.D1210E 0.28 tolerated(1) benign(0.002) TCGA-D3-A2JO-06 1 65145291 65145291 C T CACHD1 Silent p.I1035I 0.27 TCGA-D3-A2JO-06 1 70446077 70446077 C T LRRC7 Nonsense_Mutation p.Q205* 0.16 TCGA-D3-A2JO-06 1 78207390 78207390 G A USP33 Missense_Mutation p.P29L 0.14 tolerated_low_confidence(0.45) benign(0.001) TCGA-D3-A2JO-06 1 809511 809511 G A FAM41C 5'Flank 0.10 TCGA-D3-A2JO-06 1 92457852 92457852 G A BRDT Missense_Mutation p.G699E 0.26 tolerated(1) benign(0) TCGA-D3-A2JO-06 1 9324115 9324115 C T H6PD Silent p.F521F 0.39 TCGA-D3-A2JO-06 1 94546147 94546147 C T ABCA4 Missense_Mutation p.G329E 0.32 deleterious(0.02) possibly_damaging(0.764) TCGA-D3-A2JO-06 20 168682 168682 C T DEFB128 Missense_Mutation p.E43K 0.13 deleterious(0.01) possibly_damaging(0.874) TCGA-D3-A2JO-06 20 23729711 23729711 G A CST1 Missense_Mutation p.T95I 0.21 deleterious(0) possibly_damaging(0.646) TCGA-D3-A2JO-06 20 23731457 23731457 G A CST1 Missense_Mutation p.A16V 0.26 tolerated(0.19) unknown(0) TCGA-D3-A2JO-06 20 24565507 24565507 G A SYNDIG1 Missense_Mutation p.D166N 0.28 deleterious(0) probably_damaging(0.912) TCGA-D3-A2JO-06 20 30408279 30408279 G A MYLK2 Missense_Mutation p.G135S 0.18 tolerated(0.26) benign(0.011) TCGA-D3-A2JO-06 20 3210286 3210286 G A SLC4A11 Silent p.A585A 0.26 TCGA-D3-A2JO-06 20 41306677 41306677 G A PTPRT Missense_Mutation p.R328C 0.26 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A2JO-06 20 43851116 43851116 G C SEMG2 Silent p.R281R 0.27 TCGA-D3-A2JO-06 20 50400964 50400964 G A SALL4 Missense_Mutation p.S1001F 0.23 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JO-06 20 50408030 50408030 G A SALL4 Missense_Mutation p.P331L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JO-06 20 52774016 52774016 G A CYP24A1 Missense_Mutation p.P449S 0.27 deleterious(0.03) probably_damaging(0.92) TCGA-D3-A2JO-06 20 57429122 57429122 C T GNAS Missense_Mutation p.P268S 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A2JO-06 20 58562670 58562670 G A CDH26 Missense_Mutation p.E334K 0.13 deleterious(0) possibly_damaging(0.882) TCGA-D3-A2JO-06 20 61574343 61574343 C T GID8 Silent p.G41G 0.26 TCGA-D3-A2JO-06 20 62500746 62500746 G T TPD52L2 Missense_Mutation p.E39D 0.08 deleterious(0.05) benign(0.411) TCGA-D3-A2JO-06 20 62737564 62737564 G A NPBWR2 Silent p.V207V 0.13 TCGA-D3-A2JO-06 20 62737736 62737736 A T NPBWR2 Missense_Mutation p.V150E 0.30 deleterious(0) benign(0.425) TCGA-D3-A2JO-06 20 62737737 62737737 C A NPBWR2 Missense_Mutation p.V150L 0.30 tolerated(0.09) benign(0.313) TCGA-D3-A2JO-06 20 9391708 9391708 G A PLCB4 Missense_Mutation p.G663E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 21 10933874 10933874 C T TPTE Silent p.A335A 0.06 TCGA-D3-A2JO-06 21 34045783 34045783 C T SYNJ1 Silent p.K570K 0.42 TCGA-D3-A2JO-06 21 43800282 43800282 T C TMPRSS3 Missense_Mutation p.N331S 0.41 tolerated(0.73) benign(0.001) TCGA-D3-A2JO-06 22 18567993 18567993 C T PEX26 Silent p.I261I 0.24 TCGA-D3-A2JO-06 22 19035969 19035969 G A DGCR2 Silent p.F330F 0.25 TCGA-D3-A2JO-06 22 19195804 19195804 C G CLTCL1 Missense_Mutation p.V1154L 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-D3-A2JO-06 22 22673458 22673458 C T IGLV5-52 Missense_Mutation p.P84L 0.29 deleterious(0) possibly_damaging(0.705) TCGA-D3-A2JO-06 22 22890787 22890787 A G PRAME Missense_Mutation p.L411S 0.22 deleterious(0) benign(0.358) TCGA-D3-A2JO-06 22 29708093 29708093 C T GAS2L1 3'Flank 0.37 TCGA-D3-A2JO-06 22 30683225 30683225 C T GATSL3 Missense_Mutation p.D142N 0.22 tolerated(0.47) benign(0) TCGA-D3-A2JO-06 22 33265107 33265107 G A SYN3 Missense_Mutation p.S156F 0.24 deleterious(0) unknown(0) TCGA-D3-A2JO-06 22 35789610 35789610 C T HMOX1 3'UTR 0.17 TCGA-D3-A2JO-06 22 36737465 36737465 G A MYH9 Missense_Mutation p.P147L 0.11 possibly_damaging(0.731) TCGA-D3-A2JO-06 22 37098496 37098496 G A CACNG2 Silent p.T42T 0.14 TCGA-D3-A2JO-06 22 37688692 37688692 A G CYTH4 Missense_Mutation p.E17G 0.39 tolerated(0.28) benign(0.021) TCGA-D3-A2JO-06 22 38621498 38621498 G A TMEM184B Silent p.L240L 0.27 TCGA-D3-A2JO-06 2 101093863 101093863 C T NMS Missense_Mutation p.P83L 0.32 tolerated(0.07) probably_damaging(0.946) TCGA-D3-A2JO-06 2 102781254 102781254 G A IL1R1 Missense_Mutation p.E28K 0.27 tolerated(0.33) benign(0.095) TCGA-D3-A2JO-06 2 103300637 103300637 C T SLC9A2 Missense_Mutation p.P423S 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JO-06 2 113069452 113069452 G A ZC3H6 Missense_Mutation p.E229K 0.29 tolerated(0.33) benign(0.11) TCGA-D3-A2JO-06 2 113765409 113765409 G A IL36A Missense_Mutation p.E89K 0.21 tolerated(0.22) benign(0.268) TCGA-D3-A2JO-06 2 120194936 120194936 G A TMEM37 Missense_Mutation p.E165K 0.21 tolerated(0.11) possibly_damaging(0.462) TCGA-D3-A2JO-06 2 122202528 122202528 G A CLASP1 Intron 0.35 TCGA-D3-A2JO-06 2 128408726 128408726 C T GPR17 Silent p.S167S 0.19 TCGA-D3-A2JO-06 2 130899916 130899916 G A CCDC74B Missense_Mutation p.P112S 0.15 tolerated(0.67) benign(0.001) TCGA-D3-A2JO-06 2 132021467 132021467 G A POTEE Silent p.K813K 0.22 TCGA-D3-A2JO-06 2 135625155 135625155 G A ACMSD Missense_Mutation p.E165K 0.30 deleterious(0.04) possibly_damaging(0.577) TCGA-D3-A2JO-06 2 136389568 136389568 G C R3HDM1 Missense_Mutation p.R232T 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 2 138417269 138417269 C T THSD7B Missense_Mutation p.R1474W 0.44 deleterious(0.02) unknown(0) TCGA-D3-A2JO-06 2 139429090 139429090 G A NXPH2 Missense_Mutation p.P66L 0.30 tolerated(0.47) benign(0.002) TCGA-D3-A2JO-06 2 141609313 141609313 C A LRP1B Missense_Mutation p.C1540F 0.19 benign(0.012) TCGA-D3-A2JO-06 2 141625352 141625352 G A LRP1B Silent p.I1462I 0.21 TCGA-D3-A2JO-06 2 152293404 152293404 G A RIF1 Missense_Mutation p.G420E 0.28 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A2JO-06 2 152553955 152553955 G A NEB Missense_Mutation p.S425F 0.27 probably_damaging(0.956) TCGA-D3-A2JO-06 2 153484861 153484861 G C FMNL2 Silent p.R738R 0.13 TCGA-D3-A2JO-06 2 158272369 158272369 C T CYTIP Silent p.R300R 0.18 TCGA-D3-A2JO-06 2 158395120 158395120 G A ACVR1C Nonsense_Mutation p.R441* 0.37 TCGA-D3-A2JO-06 2 166179817 166179817 G A SCN2A Missense_Mutation p.R608K 0.13 deleterious(0.02) possibly_damaging(0.907) TCGA-D3-A2JO-06 2 166246021 166246021 G A SCN2A Missense_Mutation p.R1902H 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A2JO-06 2 167319026 167319026 C T SCN7A Missense_Mutation p.G319E 0.20 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JO-06 2 168100993 168100993 G A XIRP2 Missense_Mutation p.E1031K 0.28 probably_damaging(0.999) TCGA-D3-A2JO-06 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.26 possibly_damaging(0.856) TCGA-D3-A2JO-06 2 170088331 170088331 G A LRP2 Missense_Mutation p.S1707F 0.38 benign(0.221) TCGA-D3-A2JO-06 2 179438423 179438423 G A TTN Missense_Mutation p.P24146S 0.14 TCGA-D3-A2JO-06 2 179474701 179474701 G A TTN Missense_Mutation p.P17150L 0.26 TCGA-D3-A2JO-06 2 179481477 179481477 C T TTN Missense_Mutation p.E16047K 0.13 TCGA-D3-A2JO-06 2 179579889 179579889 G A TTN Missense_Mutation p.S8675F 0.24 TCGA-D3-A2JO-06 2 179584176 179584176 G A TTN Missense_Mutation p.R7981W 0.20 TCGA-D3-A2JO-06 2 179584511 179584511 C T TTN Missense_Mutation p.G7903E 0.41 TCGA-D3-A2JO-06 2 179616444 179616444 G A TTN Intron 0.21 TCGA-D3-A2JO-06 2 179644729 179644729 G A TTN Nonsense_Mutation p.Q1243* 0.15 TCGA-D3-A2JO-06 2 179666903 179666903 G C TTN Missense_Mutation p.S86C 0.07 TCGA-D3-A2JO-06 2 185802432 185802432 G A ZNF804A Missense_Mutation p.R770Q 0.21 deleterious(0.03) benign(0.003) TCGA-D3-A2JO-06 2 189850505 189850505 G A COL3A1 Splice_Site p.X149_splice 0.41 TCGA-D3-A2JO-06 2 189868984 189868984 G A COL3A1 Missense_Mutation p.G942E 0.28 probably_damaging(0.999) TCGA-D3-A2JO-06 2 197189721 197189721 G A HECW2 Missense_Mutation p.P242S 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 2 201371664 201371664 G A KCTD18 Missense_Mutation p.R26W 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 2 20402885 20402885 G A SDC1 Silent p.A242A 0.29 TCGA-D3-A2JO-06 2 20403831 20403831 G A SDC1 Nonsense_Mutation p.R124* 0.34 TCGA-D3-A2JO-06 2 215866398 215866398 G T ABCA12 Missense_Mutation p.S916Y 0.39 tolerated(0.05) possibly_damaging(0.477) TCGA-D3-A2JO-06 2 219000698 219000698 C T CXCR2 3'UTR 0.40 TCGA-D3-A2JO-06 2 219508822 219508822 G A ZNF142 Missense_Mutation p.A806V 0.23 tolerated(0.08) possibly_damaging(0.483) TCGA-D3-A2JO-06 2 222321352 222321352 C T EPHA4 Silent p.L528L 0.14 TCGA-D3-A2JO-06 2 226378250 226378250 G A NYAP2 Missense_Mutation p.D129N 0.20 tolerated(0.15) benign(0.069) TCGA-D3-A2JO-06 2 227771475 227771475 A G RHBDD1 Intron 0.18 TCGA-D3-A2JO-06 2 227922198 227922198 C T COL4A4 Silent p.G834G 0.36 TCGA-D3-A2JO-06 2 227985809 227985809 C T COL4A4 Missense_Mutation p.G83E 0.38 probably_damaging(1) TCGA-D3-A2JO-06 2 230231737 230231737 G A DNER Missense_Mutation p.L652F 0.21 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A2JO-06 2 231742169 231742169 G A ITM2C Missense_Mutation p.E206K 0.24 tolerated(0.05) possibly_damaging(0.842) TCGA-D3-A2JO-06 2 233612407 233612407 C T GIGYF2 Missense_Mutation p.R42C 0.30 probably_damaging(0.998) TCGA-D3-A2JO-06 2 25982395 25982395 A G ASXL2 Missense_Mutation p.C299R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 2 26717889 26717889 G T OTOF Missense_Mutation p.P273H 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 2 29293482 29293482 C T C2orf71 Missense_Mutation p.E1216K 0.24 tolerated(0.07) benign(0.173) TCGA-D3-A2JO-06 2 31620595 31620595 C T XDH Missense_Mutation p.G145E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 2 36706774 36706774 G A CRIM1 Missense_Mutation p.V437I 0.36 deleterious(0.01) benign(0.006) TCGA-D3-A2JO-06 2 37035854 37035854 C T VIT Silent p.S543S 0.38 TCGA-D3-A2JO-06 2 68384786 68384786 T A WDR92 5'Flank 0.20 TCGA-D3-A2JO-06 2 7001510 7001510 G A CMPK2 Missense_Mutation p.T266I 0.58 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JO-06 2 70164402 70164402 A G MXD1 Silent p.Q118Q 0.23 TCGA-D3-A2JO-06 2 71360237 71360237 A G MPHOSPH10 Missense_Mutation p.N100S 0.20 tolerated(0.52) benign(0.007) TCGA-D3-A2JO-06 2 79314715 79314715 G A REG1B Silent p.F8F 0.13 TCGA-D3-A2JO-06 2 84518025 84518025 G A FUNDC2P2 RNA 0.50 TCGA-D3-A2JO-06 2 84784929 84784929 C T DNAH6 Missense_Mutation p.S558L 0.34 tolerated(0.22) benign(0.011) TCGA-D3-A2JO-06 2 91843513 91843513 G A AC027612.6 RNA 0.09 TCGA-D3-A2JO-06 2 95513847 95513847 G C RNU6-1320P 5'Flank 0.08 TCGA-D3-A2JO-06 2 95539828 95539828 C T TEKT4 Missense_Mutation p.P230S 0.19 tolerated(0.06) benign(0.417) TCGA-D3-A2JO-06 2 97364781 97364781 G A FER1L5 Splice_Site 0.29 TCGA-D3-A2JO-06 2 99220599 99220599 T C COA5 Missense_Mutation p.Y52C 0.28 tolerated(0.16) possibly_damaging(0.895) TCGA-D3-A2JO-06 3 100295801 100295801 C T TMEM45A Missense_Mutation p.S256F 0.24 deleterious(0.01) benign(0.016) TCGA-D3-A2JO-06 3 100621520 100621520 C T ABI3BP Silent p.P97P 0.26 TCGA-D3-A2JO-06 3 100963530 100963530 C T IMPG2 Missense_Mutation p.E549K 0.19 tolerated(0.29) benign(0.149) TCGA-D3-A2JO-06 3 102171806 102171806 G A ZPLD1 Silent p.T66T 0.26 TCGA-D3-A2JO-06 3 105422976 105422976 G A CBLB Silent p.S483S 0.21 TCGA-D3-A2JO-06 3 107491930 107491930 G A BBX Silent p.K454K 0.20 TCGA-D3-A2JO-06 3 118935088 118935088 G A B4GALT4 Missense_Mutation p.R301W 0.28 deleterious(0.02) benign(0.383) TCGA-D3-A2JO-06 3 119306413 119306413 G A ADPRH Silent p.R254R 0.26 TCGA-D3-A2JO-06 3 121137202 121137202 G A STXBP5L Missense_Mutation p.G1106E 0.32 deleterious(0) probably_damaging(0.928) TCGA-D3-A2JO-06 3 121616254 121616254 C T SLC15A2 Silent p.F71F 0.24 TCGA-D3-A2JO-06 3 122645383 122645383 A C SEMA5B Missense_Mutation p.L385R 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A2JO-06 3 123333127 123333127 A G MYLK Missense_Mutation p.I1857T 0.28 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 3 125836892 125836892 G A ALDH1L1 Silent p.I656I 0.13 TCGA-D3-A2JO-06 3 130284092 130284092 G A COL6A6 Missense_Mutation p.A306T 0.26 tolerated(0.14) probably_damaging(0.938) TCGA-D3-A2JO-06 3 132407684 132407684 G A NPHP3 Missense_Mutation p.P979S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 3 133524675 133524675 G A SRPRB 5'UTR 0.18 TCGA-D3-A2JO-06 3 135720842 135720842 G A PPP2R3A Missense_Mutation p.D168N 0.18 tolerated_low_confidence(0.23) probably_damaging(0.99) TCGA-D3-A2JO-06 3 13860507 13860507 G A WNT7A Silent p.F328F 0.19 TCGA-D3-A2JO-06 3 138668406 138668406 C T C3orf72 Silent p.L49L 0.13 TCGA-D3-A2JO-06 3 141526599 141526599 G A GRK7 Missense_Mutation p.R388Q 0.27 tolerated(0.75) probably_damaging(0.928) TCGA-D3-A2JO-06 3 14239577 14239577 T C LSM3 Silent p.D90D 0.28 TCGA-D3-A2JO-06 3 142557655 142557655 C T PCOLCE2 Missense_Mutation p.D223N 0.21 tolerated(0.07) possibly_damaging(0.858) TCGA-D3-A2JO-06 3 151166395 151166395 G A IGSF10 Silent p.I458I 0.24 TCGA-D3-A2JO-06 3 15686538 15686538 C T BTD Missense_Mutation p.P392L 0.20 tolerated(0.08) benign(0.008) TCGA-D3-A2JO-06 3 160786714 160786714 C T PPM1L Silent p.I284I 0.21 TCGA-D3-A2JO-06 3 167272581 167272581 C T WDR49 Nonsense_Mutation p.W219* 0.13 TCGA-D3-A2JO-06 3 167525035 167525035 C T SERPINI1 Silent p.F295F 0.22 TCGA-D3-A2JO-06 3 169497339 169497339 A T MYNN Missense_Mutation p.R350S 0.27 deleterious(0) probably_damaging(0.984) TCGA-D3-A2JO-06 3 172835523 172835523 G A SPATA16 5'UTR 0.27 TCGA-D3-A2JO-06 3 184104890 184104890 G A CHRD Missense_Mutation p.G781E 0.26 tolerated(0.71) probably_damaging(1) TCGA-D3-A2JO-06 3 186272697 186272697 A G TBCCD1 Missense_Mutation p.S346P 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 3 193080362 193080362 T A ATP13A5 Missense_Mutation p.K150I 0.29 tolerated(0.13) probably_damaging(0.982) TCGA-D3-A2JO-06 3 195453210 195453210 C T MUC20 Missense_Mutation p.A579V 0.13 tolerated(0.76) unknown(0) TCGA-D3-A2JO-06 3 19956845 19956845 C T EFHB Missense_Mutation p.G413E 0.23 deleterious(0.01) benign(0.018) TCGA-D3-A2JO-06 3 21792443 21792443 C T ZNF385D 5'UTR 0.32 TCGA-D3-A2JO-06 3 28454676 28454676 G A ZCWPW2 Silent p.L39L 0.22 TCGA-D3-A2JO-06 3 36897057 36897057 C T TRANK1 Missense_Mutation p.E1342K 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-D3-A2JO-06 3 38674787 38674787 G A SCN5A Silent p.F4F 0.24 TCGA-D3-A2JO-06 3 39150695 39150695 C T TTC21A Silent p.V49V 0.25 TCGA-D3-A2JO-06 3 40457369 40457369 G A ENTPD3 Silent p.V212V 0.16 TCGA-D3-A2JO-06 3 42950293 42950293 C T ZNF662 Missense_Mutation p.P75S 0.26 tolerated(0.17) possibly_damaging(0.892) TCGA-D3-A2JO-06 3 46245360 46245360 A T CCR1 Missense_Mutation p.F149I 0.19 deleterious(0.03) benign(0.345) TCGA-D3-A2JO-06 3 46490500 46490500 C T LTF Missense_Mutation p.E356K 0.18 tolerated(0.51) benign(0.004) TCGA-D3-A2JO-06 3 46939926 46939926 C T PTH1R Missense_Mutation p.S201F 0.23 deleterious(0) probably_damaging(0.992) TCGA-D3-A2JO-06 3 47891505 47891506 - C DHX30 Frame_Shift_Ins p.S1163Qfs*25 0.38 TCGA-D3-A2JO-06 3 49167662 49167662 A C LAMB2 Splice_Site p.X409_splice 0.31 TCGA-D3-A2JO-06 3 50114528 50114528 C T RBM6 Nonsense_Mutation p.R1112* 0.26 TCGA-D3-A2JO-06 3 51264789 51264789 C T DOCK3 Missense_Mutation p.P485S 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 3 52506374 52506374 C T NISCH Missense_Mutation p.P210L 0.24 tolerated(0.06) benign(0.35) TCGA-D3-A2JO-06 3 52941212 52941212 T C SFMBT1 Missense_Mutation p.K735R 0.22 tolerated(0.42) possibly_damaging(0.682) TCGA-D3-A2JO-06 3 54919573 54919573 G A CACNA2D3 Silent p.A672A 0.12 TCGA-D3-A2JO-06 3 54930827 54930827 C T CACNA2D3 Silent p.F766F 0.28 TCGA-D3-A2JO-06 3 56330089 56330089 C T ERC2 Silent p.V344V 0.28 TCGA-D3-A2JO-06 3 58135710 58135710 C T FLNB Silent p.F2106F 0.21 TCGA-D3-A2JO-06 3 63973764 63973764 C T ATXN7 Silent p.V375V 0.19 TCGA-D3-A2JO-06 3 68055707 68055707 G A FAM19A1 Intron 0.19 TCGA-D3-A2JO-06 3 68593657 68593657 G A FAM19A1 3'UTR 0.16 TCGA-D3-A2JO-06 3 78676597 78676597 G A ROBO1 Missense_Mutation p.P1250L 0.39 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JO-06 3 9166442 9166442 G A SRGAP3 Missense_Mutation p.S76F 0.20 deleterious(0.01) possibly_damaging(0.876) TCGA-D3-A2JO-06 3 9798520 9798520 C T OGG1 Intron 0.24 TCGA-D3-A2JO-06 3 9991023 9991023 C T PRRT3 Silent p.E259E 0.19 TCGA-D3-A2JO-06 4 104510934 104510934 T C TACR3 Missense_Mutation p.S435G 0.15 tolerated(0.07) benign(0.001) TCGA-D3-A2JO-06 4 110663746 110663746 C T CFI Missense_Mutation p.E479K 0.12 tolerated(0.98) benign(0.002) TCGA-D3-A2JO-06 4 114378553 114378553 G A CAMK2D Silent p.R457R 0.24 TCGA-D3-A2JO-06 4 115769380 115769380 C T NDST4 Missense_Mutation p.G644E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 4 122063913 122063913 C T TNIP3 Missense_Mutation p.E329K 0.13 deleterious(0.01) benign(0.311) TCGA-D3-A2JO-06 4 125590850 125590850 A G ANKRD50 Silent p.T1194T 0.21 TCGA-D3-A2JO-06 4 154256063 154256063 T C TRIM2 Missense_Mutation p.V754A 0.17 deleterious(0) probably_damaging(0.983) TCGA-D3-A2JO-06 4 156715051 156715051 T G GUCY1B3 Nonsense_Mutation p.L180* 0.09 TCGA-D3-A2JO-06 4 156841079 156841079 C A TDO2 Missense_Mutation p.H386Q 0.24 tolerated(0.3) possibly_damaging(0.594) TCGA-D3-A2JO-06 4 159560435 159560435 C T RXFP1 Missense_Mutation p.S356L 0.13 tolerated(0.1) benign(0.005) TCGA-D3-A2JO-06 4 166239029 166239029 C T KLHL2 Missense_Mutation p.S558F 0.10 deleterious(0.01) benign(0.333) TCGA-D3-A2JO-06 4 169374306 169374306 C T DDX60L Nonsense_Mutation p.W322* 0.13 TCGA-D3-A2JO-06 4 175649721 175649721 G A GLRA3 Silent p.F132F 0.17 TCGA-D3-A2JO-06 4 175897899 175897899 G A ADAM29 Missense_Mutation p.G408E 0.20 tolerated(1) benign(0.246) TCGA-D3-A2JO-06 4 175898183 175898183 G A ADAM29 Missense_Mutation p.E503K 0.20 tolerated(0.14) benign(0.145) TCGA-D3-A2JO-06 4 177190076 177190076 T C ASB5 Missense_Mutation p.T62A 0.09 tolerated(0.88) benign(0.004) TCGA-D3-A2JO-06 4 186380286 186380286 T G CCDC110 Missense_Mutation p.E485D 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A2JO-06 4 20555511 20555511 G A SLIT2 Missense_Mutation p.G882E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 4 21699110 21699110 A C KCNIP4 Intron 0.36 TCGA-D3-A2JO-06 4 22749499 22749499 C T GBA3 Silent p.F289F 0.25 TCGA-D3-A2JO-06 4 39439522 39439522 A G KLB Silent p.R504R 0.25 TCGA-D3-A2JO-06 4 47559942 47559942 G A ATP10D Missense_Mutation p.E696K 0.34 tolerated(0.47) benign(0.155) TCGA-D3-A2JO-06 4 47912912 47912912 C T NFXL1 Missense_Mutation p.G112E 0.10 tolerated(1) benign(0.005) TCGA-D3-A2JO-06 4 48178188 48178188 C T TEC Missense_Mutation p.G52R 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 4 49052780 49052780 C T CWH43 Silent p.I645I 0.22 TCGA-D3-A2JO-06 4 5721001 5721001 G C EVC Missense_Mutation p.K67N 0.13 deleterious(0.01) possibly_damaging(0.711) TCGA-D3-A2JO-06 4 57325560 57325560 T G PAICS Silent p.L385L 0.20 TCGA-D3-A2JO-06 4 6302805 6302805 C T WFS1 Missense_Mutation p.P428L 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 4 65147222 65147222 G A TECRL Silent p.F296F 0.31 TCGA-D3-A2JO-06 4 70160312 70160312 C T UGT2B28 Nonsense_Mutation p.R459* 0.20 TCGA-D3-A2JO-06 4 70455136 70455136 G A UGT2A1 Missense_Mutation p.S679F 0.23 tolerated(0.06) benign(0.008) TCGA-D3-A2JO-06 4 79173607 79173607 G A FRAS1 Missense_Mutation p.R124Q 0.13 benign(0.016) TCGA-D3-A2JO-06 4 88766238 88766238 C T MEPE Missense_Mutation p.S73F 0.25 tolerated(0.19) benign(0.092) TCGA-D3-A2JO-06 4 88766239 88766239 C A MEPE Silent p.S73S 0.29 TCGA-D3-A2JO-06 4 96761521 96761521 T C PDHA2 Silent p.L74L 0.23 TCGA-D3-A2JO-06 5 100147811 100147811 G A ST8SIA4 Missense_Mutation p.P274S 0.34 benign(0.007) TCGA-D3-A2JO-06 5 1079556 1079556 G A SLC12A7 Silent p.I451I 0.23 TCGA-D3-A2JO-06 5 114598557 114598557 G A PGGT1B 5'UTR 0.17 TCGA-D3-A2JO-06 5 121759016 121759016 G A SNCAIP Missense_Mutation p.G195E 0.28 deleterious(0.04) possibly_damaging(0.694) TCGA-D3-A2JO-06 5 126993360 126993360 C T CTXN3 Silent p.F49F 0.23 TCGA-D3-A2JO-06 5 127654673 127654673 G A FBN2 Nonsense_Mutation p.Q1498* 0.20 TCGA-D3-A2JO-06 5 128862105 128862105 G A ADAMTS19 Missense_Mutation p.G342R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 5 13759047 13759047 C T DNAH5 Missense_Mutation p.D3443N 0.34 possibly_damaging(0.822) TCGA-D3-A2JO-06 5 13830235 13830235 G A DNAH5 Missense_Mutation p.S2050F 0.24 possibly_damaging(0.788) TCGA-D3-A2JO-06 5 140011580 140011580 G A CD14 Missense_Mutation p.P330L 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 5 140209737 140209737 G A PCDHA6 Silent p.A687A 0.09 TCGA-D3-A2JO-06 5 140215343 140215343 G A PCDHA7 Missense_Mutation p.E459K 0.38 tolerated_low_confidence(0.05) benign(0.176) TCGA-D3-A2JO-06 5 140255201 140255201 C T PCDHA12 Silent p.I48I 0.18 TCGA-D3-A2JO-06 5 140515368 140515368 C T PCDHB5 Nonsense_Mutation p.Q118* 0.23 TCGA-D3-A2JO-06 5 140515473 140515473 C T PCDHB5 Missense_Mutation p.P153S 0.14 tolerated_low_confidence(0.14) benign(0.091) TCGA-D3-A2JO-06 5 140589962 140589962 G A PCDHB12 Missense_Mutation p.D495N 0.13 deleterious_low_confidence(0.04) benign(0.33) TCGA-D3-A2JO-06 5 140685 140685 C T PLEKHG4B Missense_Mutation p.P88L 0.36 tolerated(0.66) benign(0.001) TCGA-D3-A2JO-06 5 140740865 140740865 G A PCDHGB2 Missense_Mutation p.G388E 0.12 tolerated(0.86) benign(0.06) TCGA-D3-A2JO-06 5 14394211 14394211 G A TRIO Missense_Mutation p.R1428Q 0.19 probably_damaging(0.999) TCGA-D3-A2JO-06 5 14482854 14482854 C T TRIO Missense_Mutation p.P2210L 0.10 benign(0) TCGA-D3-A2JO-06 5 145872509 145872509 G A TCERG1 Silent p.R713R 0.13 TCGA-D3-A2JO-06 5 156890327 156890327 G A NIPAL4 Missense_Mutation p.G150E 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 5 161520913 161520913 G A GABRG2 Missense_Mutation p.E63K 0.12 tolerated(0.06) benign(0.364) TCGA-D3-A2JO-06 5 16451638 16451638 A G ZNF622 3'UTR 0.25 TCGA-D3-A2JO-06 5 167833291 167833291 G A WWC1 Missense_Mutation p.A227T 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JO-06 5 17275434 17275434 C T BASP1 Missense_Mutation p.P37S 0.37 deleterious(0.01) unknown(0) TCGA-D3-A2JO-06 5 17275435 17275435 C T BASP1 Missense_Mutation p.P37L 0.42 deleterious(0.01) unknown(0) TCGA-D3-A2JO-06 5 176308425 176308425 C T HK3 Silent p.R835R 0.21 TCGA-D3-A2JO-06 5 180050949 180050949 C T FLT4 Missense_Mutation p.E512K 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A2JO-06 5 180058777 180058777 G C FLT4 Silent p.G20G 0.13 TCGA-D3-A2JO-06 5 24498584 24498584 A C CDH10 Missense_Mutation p.L480V 0.28 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A2JO-06 5 31323187 31323187 C T CDH6 Silent p.F715F 0.19 TCGA-D3-A2JO-06 5 32074135 32074135 G C PDZD2 Missense_Mutation p.E975Q 0.08 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A2JO-06 5 32774912 32774912 G A NPR3 Silent p.G386G 0.21 TCGA-D3-A2JO-06 5 36181928 36181928 G A SKP2 Missense_Mutation p.G357E 0.23 tolerated(0.13) possibly_damaging(0.477) TCGA-D3-A2JO-06 5 36684074 36684074 G A SLC1A3 Silent p.T466T 0.16 TCGA-D3-A2JO-06 5 37183485 37183485 A T C5orf42 Missense_Mutation p.L1600I 0.28 deleterious(0) probably_damaging(0.955) TCGA-D3-A2JO-06 5 78952792 78952792 C T PAPD4 Missense_Mutation p.P347S 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A2JO-06 5 79032417 79032417 G T CMYA5 Missense_Mutation p.R2610I 0.21 probably_damaging(0.928) TCGA-D3-A2JO-06 5 82948513 82948513 G A HAPLN1 Silent p.I77I 0.14 TCGA-D3-A2JO-06 6 109286209 109286209 G C ARMC2 Missense_Mutation p.G771A 0.29 deleterious(0.04) possibly_damaging(0.857) TCGA-D3-A2JO-06 6 11735912 11735912 G A ADTRP Missense_Mutation p.T150I 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A2JO-06 6 128150677 128150680 TCTT - THEMIS Frame_Shift_Del p.K217Tfs*6 0.26 TCGA-D3-A2JO-06 6 144759886 144759886 A T UTRN Missense_Mutation p.H416L 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 6 144759887 144759887 C T UTRN Silent p.H416H 0.24 TCGA-D3-A2JO-06 6 152644784 152644784 G A SYNE1 Missense_Mutation p.T5249I 0.47 benign(0) TCGA-D3-A2JO-06 6 152644785 152644785 T A SYNE1 Missense_Mutation p.T5249S 0.48 benign(0.001) TCGA-D3-A2JO-06 6 168910607 168910607 G A SMOC2 Missense_Mutation p.D33N 0.26 deleterious(0) possibly_damaging(0.839) TCGA-D3-A2JO-06 6 170110373 170110373 G A PHF10 Missense_Mutation p.P358S 0.29 tolerated(0.97) benign(0) TCGA-D3-A2JO-06 6 17543150 17543150 C T CAP2 Missense_Mutation p.S362L 0.36 deleterious(0.02) possibly_damaging(0.904) TCGA-D3-A2JO-06 6 24533840 24533840 C T ALDH5A1 Missense_Mutation p.P516L 0.20 deleterious(0) benign(0.167) TCGA-D3-A2JO-06 6 28472261 28472261 C T GPX6 Silent p.P158P 0.38 TCGA-D3-A2JO-06 6 28962711 28962711 A T ZNF311 3'UTR 0.27 TCGA-D3-A2JO-06 6 29343044 29343044 C T OR12D3 Missense_Mutation p.M7I 0.11 tolerated(0.13) benign(0.001) TCGA-D3-A2JO-06 6 2949198 2949198 C T SERPINB6 Missense_Mutation p.E227K 0.49 deleterious(0.03) possibly_damaging(0.604) TCGA-D3-A2JO-06 6 31431623 31431623 G A HCP5 RNA 0.30 TCGA-D3-A2JO-06 6 31515390 31515390 C T NFKBIL1 5'UTR 0.44 TCGA-D3-A2JO-06 6 31609699 31609699 G A BAG6 Missense_Mutation p.L757F 0.19 tolerated(0.08) probably_damaging(0.986) TCGA-D3-A2JO-06 6 32017064 32017064 G A TNXB 5'Flank 0.20 TCGA-D3-A2JO-06 6 32083662 32083662 G A ATF6B Missense_Mutation p.H656Y 0.17 deleterious(0.04) probably_damaging(0.925) TCGA-D3-A2JO-06 6 32411075 32411075 C T HLA-DRA Nonsense_Mutation p.R148* 0.15 TCGA-D3-A2JO-06 6 35211469 35211469 G A SCUBE3 Missense_Mutation p.D670N 0.32 tolerated(0.22) possibly_damaging(0.608) TCGA-D3-A2JO-06 6 38160295 38160295 C T BTBD9 Silent p.E547E 0.47 TCGA-D3-A2JO-06 6 38885052 38885052 T A DNAH8 Missense_Mutation p.L3176H 0.11 probably_damaging(0.999) TCGA-D3-A2JO-06 6 41121581 41121581 C T TREML1 Silent p.E97E 0.18 TCGA-D3-A2JO-06 6 43416634 43416634 C T ABCC10 Silent p.I1325I 0.41 TCGA-D3-A2JO-06 6 46135640 46135640 C T ENPP5 Silent p.A120A 0.08 TCGA-D3-A2JO-06 6 46821638 46821638 G A GPR116 3'UTR 0.31 TCGA-D3-A2JO-06 6 5613428 5613428 C T FARS2 Silent p.I364I 0.13 TCGA-D3-A2JO-06 6 56473826 56473826 G A DST Intron 0.19 TCGA-D3-A2JO-06 6 7583627 7583627 C T DSP Silent p.S2044S 0.34 TCGA-D3-A2JO-06 6 9903633 9903633 C T OFCC1 Intron 0.11 TCGA-D3-A2JO-06 7 100701391 100701391 C T MUC17 3'UTR 0.20 TCGA-D3-A2JO-06 7 106508805 106508805 G A PIK3CG Missense_Mutation p.E267K 0.19 tolerated(0.33) possibly_damaging(0.679) TCGA-D3-A2JO-06 7 111430623 111430623 G A DOCK4 Missense_Mutation p.P1069S 0.16 deleterious(0.05) possibly_damaging(0.598) TCGA-D3-A2JO-06 7 116380009 116380009 G A MET Silent p.V466V 0.28 TCGA-D3-A2JO-06 7 117243607 117243607 G A CFTR Silent p.G893G 0.20 TCGA-D3-A2JO-06 7 121651908 121651908 C T PTPRZ1 Silent p.S936S 0.26 TCGA-D3-A2JO-06 7 122091462 122091462 A G CADPS2 Missense_Mutation p.S752P 0.17 deleterious(0.03) benign(0.122) TCGA-D3-A2JO-06 7 129909563 129909563 C T CPA2 Missense_Mutation p.P70S 0.32 deleterious(0.03) probably_damaging(0.97) TCGA-D3-A2JO-06 7 134221899 134221899 G A AKR1B10 Missense_Mutation p.D217N 0.32 tolerated(0.19) benign(0.037) TCGA-D3-A2JO-06 7 135418828 135418854 CAGGGCTGTGCGGTAGGCTGTGTAGGC - FAM180A In_Frame_Del p.A131_L139del 0.26 TCGA-D3-A2JO-06 7 136699591 136699591 G A CHRM2 5'UTR 0.29 TCGA-D3-A2JO-06 7 139728475 139728475 G A PARP12 Missense_Mutation p.P479S 0.33 tolerated(1) benign(0.021) TCGA-D3-A2JO-06 7 142021212 142021212 C T TRBV5-1 Silent p.F64F 0.21 TCGA-D3-A2JO-06 7 142168486 142168486 G A TRBV5-4 Silent p.F79F 0.18 TCGA-D3-A2JO-06 7 142448623 142448623 G A TRBV29-1 Missense_Mutation p.E73K 0.21 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JO-06 7 142571240 142571240 C G TRPV6 Missense_Mutation p.W583C 0.24 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JO-06 7 142639971 142639971 G A KEL Silent p.I644I 0.20 TCGA-D3-A2JO-06 7 142836720 142836720 C T PIP Silent p.I142I 0.17 TCGA-D3-A2JO-06 7 143421773 143421773 C T FAM115C Silent p.L830L 0.40 TCGA-D3-A2JO-06 7 143633249 143633249 C T OR2F2 Silent p.F308F 0.30 TCGA-D3-A2JO-06 7 14647102 14647102 G A DGKB Missense_Mutation p.P465S 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 7 146471470 146471470 G A CNTNAP2 Missense_Mutation p.G69R 0.24 tolerated(0.13) benign(0.296) TCGA-D3-A2JO-06 7 147092753 147092753 C A CNTNAP2 Missense_Mutation p.F517L 0.20 deleterious(0.04) possibly_damaging(0.866) TCGA-D3-A2JO-06 7 150831522 150831524 CCT TC AGAP3 Frame_Shift_Del p.L455Rfs*6 0.21 TCGA-D3-A2JO-06 7 2623876 2623876 C T IQCE Missense_Mutation p.R261C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 7 27284924 27284924 G A EVX1 Splice_Site p.X228_splice 0.31 TCGA-D3-A2JO-06 7 38725305 38725305 C T FAM183B Missense_Mutation p.D101N 0.28 tolerated(1) benign(0) TCGA-D3-A2JO-06 7 47913531 47913531 G C PKD1L1 Missense_Mutation p.R1288G 0.17 deleterious(0.02) possibly_damaging(0.872) TCGA-D3-A2JO-06 7 50459558 50459558 C T IKZF1 Missense_Mutation p.L241F 0.19 deleterious(0) benign(0.009) TCGA-D3-A2JO-06 7 5105071 5105071 C T RBAK Nonsense_Mutation p.Q662* 0.16 TCGA-D3-A2JO-06 7 56079562 56079562 C G PSPH Missense_Mutation p.D191H 0.19 deleterious(0.02) probably_damaging(0.923) TCGA-D3-A2JO-06 7 6017358 6017358 G A PMS2 Missense_Mutation p.S769F 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 7 74169867 74169867 A G GTF2I Missense_Mutation p.N951S 0.14 tolerated(0.07) benign(0.005) TCGA-D3-A2JO-06 7 74211427 74211427 G A GTF2IRD2 Silent p.T808T 0.24 TCGA-D3-A2JO-06 7 81381528 81381528 C T HGF Missense_Mutation p.R178Q 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 7 82581191 82581191 A G PCLO Silent p.T3026T 0.16 TCGA-D3-A2JO-06 7 82595332 82595332 C T PCLO Missense_Mutation p.E1258K 0.22 unknown(0) TCGA-D3-A2JO-06 7 86394822 86394822 G A GRM3 Missense_Mutation p.D121N 0.15 deleterious(0.04) benign(0.158) TCGA-D3-A2JO-06 7 91630784 91630784 T C AKAP9 Missense_Mutation p.L518P 0.08 benign(0.059) TCGA-D3-A2JO-06 7 92764874 92764874 C T SAMD9L Missense_Mutation p.M137I 0.22 tolerated(0.2) benign(0.002) TCGA-D3-A2JO-06 7 94917927 94917927 C T PPP1R9A Missense_Mutation p.S1270F 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A2JO-06 7 94937327 94937327 C T PON1 Missense_Mutation p.G232S 0.23 tolerated(0.27) probably_damaging(0.979) TCGA-D3-A2JO-06 7 96651668 96651668 G A DLX5 Silent p.T123T 0.14 TCGA-D3-A2JO-06 7 98592250 98592250 C T TRRAP Missense_Mutation p.S3349F 0.22 benign(0.017) TCGA-D3-A2JO-06 7 99303119 99303119 G A CYP3A7 3'UTR 0.26 TCGA-D3-A2JO-06 8 113256643 113256643 C T CSMD3 Missense_Mutation p.G3461E 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A2JO-06 8 11607646 11607646 C T GATA4 Silent p.S270S 0.41 TCGA-D3-A2JO-06 8 11994895 11994895 G A USP17L2 Silent p.L459L 0.14 TCGA-D3-A2JO-06 8 130789704 130789704 C T GSDMC Missense_Mutation p.D44N 0.10 tolerated(0.91) benign(0.005) TCGA-D3-A2JO-06 8 135577646 135577646 G A ZFAT Missense_Mutation p.T969M 0.10 deleterious(0.04) possibly_damaging(0.89) TCGA-D3-A2JO-06 8 142506556 142506556 C T MROH5 Missense_Mutation p.M7I 0.38 tolerated_low_confidence(0.15) benign(0.055) TCGA-D3-A2JO-06 8 144661917 144661917 C T EEF1D 3'UTR 0.37 TCGA-D3-A2JO-06 8 144941965 144941965 G A EPPK1 Silent p.A1819A 0.49 TCGA-D3-A2JO-06 8 145540765 145540765 A G DGAT1 Missense_Mutation p.Y390H 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 8 20028641 20028641 G C SLC18A1 Missense_Mutation p.I277M 0.52 tolerated(0.23) probably_damaging(0.992) TCGA-D3-A2JO-06 8 22267571 22267571 C T SLC39A14 Silent p.F190F 0.50 TCGA-D3-A2JO-06 8 23160888 23160888 A G LOXL2 Missense_Mutation p.F635L 0.36 deleterious(0.01) benign(0.155) TCGA-D3-A2JO-06 8 26238124 26238124 C T BNIP3L 5'Flank 0.36 TCGA-D3-A2JO-06 8 3165261 3165261 G A CSMD1 Silent p.L1302L 0.42 TCGA-D3-A2JO-06 8 37795255 37795255 G A GOT1L1 Missense_Mutation p.H104Y 0.50 deleterious(0) possibly_damaging(0.823) TCGA-D3-A2JO-06 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.18 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JO-06 8 55539794 55539794 C T RP1 Missense_Mutation p.H1118Y 0.48 deleterious(0) benign(0.021) TCGA-D3-A2JO-06 8 57228723 57228723 G T SDR16C5 Silent p.R62R 0.31 TCGA-D3-A2JO-06 8 59059713 59059713 C T FAM110B Silent p.F308F 0.25 TCGA-D3-A2JO-06 8 61654698 61654698 C T CHD7 Missense_Mutation p.S236F 0.25 possibly_damaging(0.485) TCGA-D3-A2JO-06 8 62366804 62366804 G A CLVS1 Silent p.R245R 0.24 TCGA-D3-A2JO-06 8 67577010 67577010 C G VCPIP1 Missense_Mutation p.Q728H 0.11 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JO-06 8 68430177 68430177 C T CPA6 Missense_Mutation p.E100K 0.13 tolerated(0.13) benign(0.006) TCGA-D3-A2JO-06 8 82391097 82391097 G A FABP4 3'UTR 0.38 TCGA-D3-A2JO-06 8 86389382 86389382 C T CA2 Missense_Mutation p.R181C 0.11 deleterious(0.02) benign(0.011) TCGA-D3-A2JO-06 8 95677408 95677408 C T ESRP1 Silent p.F305F 0.09 TCGA-D3-A2JO-06 8 99168505 99168505 C T POP1 Missense_Mutation p.S762F 0.43 deleterious(0.04) benign(0.002) TCGA-D3-A2JO-06 9 104238208 104238208 C T TMEM246 Silent p.G389G 0.24 TCGA-D3-A2JO-06 9 104340058 104340058 C A GRIN3A Silent p.V1000V 0.21 TCGA-D3-A2JO-06 9 105767362 105767362 G A CYLC2 Missense_Mutation p.G150E 0.26 tolerated(0.38) unknown(0) TCGA-D3-A2JO-06 9 105767653 105767653 G A CYLC2 Missense_Mutation p.G247E 0.27 tolerated(0.29) unknown(0) TCGA-D3-A2JO-06 9 108097938 108097938 C T SLC44A1 Silent p.L122L 0.25 TCGA-D3-A2JO-06 9 113704021 113704021 C T LPAR1 Missense_Mutation p.R158Q 0.23 tolerated(0.32) benign(0.007) TCGA-D3-A2JO-06 9 119976717 119976717 T A ASTN2 Missense_Mutation p.D312V 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-D3-A2JO-06 9 125282298 125282298 G A OR1J4 Silent p.R293R 0.25 TCGA-D3-A2JO-06 9 134454895 134454895 C G RAPGEF1 Missense_Mutation p.E1093Q 0.10 tolerated_low_confidence(0.1) probably_damaging(0.991) TCGA-D3-A2JO-06 9 135374771 135374771 G C C9orf171 Missense_Mutation p.W139S 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 9 136501618 136501618 C T DBH Missense_Mutation p.P42L 0.24 tolerated(0.09) benign(0.018) TCGA-D3-A2JO-06 9 137715262 137715262 G A COL5A1 Missense_Mutation p.G1549S 0.21 unknown(0) TCGA-D3-A2JO-06 9 138660731 138660731 C T KCNT1 Silent p.P486P 0.13 TCGA-D3-A2JO-06 9 138683645 138683645 G A KCNT1 Missense_Mutation p.E1169K 0.24 deleterious(0.01) possibly_damaging(0.684) TCGA-D3-A2JO-06 9 140059517 140059517 G A GRIN1 Intron 0.40 TCGA-D3-A2JO-06 9 140328737 140328737 C T NOXA1 Silent p.F459F 0.22 TCGA-D3-A2JO-06 9 140952615 140952615 C T CACNA1B Silent p.F1407F 0.21 TCGA-D3-A2JO-06 9 18639317 18639317 C T ADAMTSL1 Missense_Mutation p.L248F 0.24 tolerated(0.17) benign(0.058) TCGA-D3-A2JO-06 9 2804276 2804276 G A KIAA0020 3'UTR 0.21 TCGA-D3-A2JO-06 9 3248151 3248151 C T RFX3 Missense_Mutation p.A617T 0.15 deleterious(0) possibly_damaging(0.889) TCGA-D3-A2JO-06 9 33463377 33463377 G A NOL6 Silent p.I1019I 0.35 TCGA-D3-A2JO-06 9 34621491 34621491 T G ARID3C Silent p.P401P 0.12 TCGA-D3-A2JO-06 9 35739703 35739703 G A GBA2 Silent p.L502L 0.34 TCGA-D3-A2JO-06 9 35806418 35806418 T C NPR2 Missense_Mutation p.L801P 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A2JO-06 9 37541368 37541368 C T FBXO10 Missense_Mutation p.R133Q 0.20 tolerated(0.07) possibly_damaging(0.636) TCGA-D3-A2JO-06 9 38397198 38397198 T C ALDH1B1 Missense_Mutation p.F485L 0.29 deleterious(0) probably_damaging(0.979) TCGA-D3-A2JO-06 9 6984218 6984218 G T KDM4C Nonsense_Mutation p.E390* 0.25 TCGA-D3-A2JO-06 9 71628457 71628457 C T PRKACG Silent p.T184T 0.25 TCGA-D3-A2JO-06 9 79117979 79117979 G A GCNT1 Missense_Mutation p.E228K 0.21 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JO-06 9 79323163 79323163 C T PRUNE2 Missense_Mutation p.E1343K 0.30 tolerated(0.23) benign(0.218) TCGA-D3-A2JO-06 9 79974297 79974297 A C VPS13A Missense_Mutation p.H2695P 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 9 86593125 86593125 T G HNRNPK Missense_Mutation p.T15P 0.15 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-D3-A2JO-06 X 101138613 101138613 G A ZMAT1 Nonsense_Mutation p.R596* 0.32 TCGA-D3-A2JO-06 X 101910184 101910184 G A GPRASP1 Missense_Mutation p.G448E 0.20 tolerated(0.47) benign(0.049) TCGA-D3-A2JO-06 X 102004755 102004755 A G BHLHB9 Missense_Mutation p.I278V 0.22 tolerated(0.7) benign(0.001) TCGA-D3-A2JO-06 X 105137833 105137833 G A NRK Missense_Mutation p.M129I 0.33 deleterious(0) possibly_damaging(0.766) TCGA-D3-A2JO-06 X 106016362 106016362 G A RNF128 Missense_Mutation p.R235Q 0.24 tolerated(0.28) probably_damaging(0.961) TCGA-D3-A2JO-06 X 111698023 111698023 C T ZCCHC16 Silent p.L23L 0.21 TCGA-D3-A2JO-06 X 111698282 111698282 G A ZCCHC16 Missense_Mutation p.S109N 0.31 tolerated(0.59) benign(0.006) TCGA-D3-A2JO-06 X 11783870 11783870 C T MSL3 Intron 0.19 TCGA-D3-A2JO-06 X 119708441 119708441 C T CUL4B Missense_Mutation p.G11E 0.23 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-D3-A2JO-06 X 122538601 122538601 G A GRIA3 Missense_Mutation p.E446K 0.15 tolerated(0.35) benign(0.053) TCGA-D3-A2JO-06 X 122820484 122820484 A T THOC2 Missense_Mutation p.F228I 0.19 deleterious(0) probably_damaging(0.957) TCGA-D3-A2JO-06 X 124028169 124028169 C T TENM1 Missense_Mutation p.E171K 0.18 tolerated_low_confidence(0.89) benign(0.001) TCGA-D3-A2JO-06 X 124028170 124028170 C T TENM1 Missense_Mutation p.M170I 0.16 tolerated_low_confidence(0.52) benign(0) TCGA-D3-A2JO-06 X 12905004 12905004 C T TLR7 Silent p.V459V 0.19 TCGA-D3-A2JO-06 X 129058844 129058844 G A UTP14A Silent p.R474R 0.25 TCGA-D3-A2JO-06 X 129060059 129060059 C T UTP14A Silent p.G638G 0.30 TCGA-D3-A2JO-06 X 129060060 129060060 C T UTP14A Silent p.L639L 0.32 TCGA-D3-A2JO-06 X 140994088 140994088 C T MAGEC1 Nonsense_Mutation p.Q300* 0.23 TCGA-D3-A2JO-06 X 141290861 141290861 C T MAGEC2 Missense_Mutation p.A305T 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JO-06 X 150891286 150891286 C T FATE1 3'UTR 0.42 TCGA-D3-A2JO-06 X 151303172 151303172 C T MAGEA10 Silent p.R307R 0.23 TCGA-D3-A2JO-06 X 153200941 153200941 C A RENBP Splice_Site p.X389_splice 0.26 TCGA-D3-A2JO-06 X 153693375 153693375 C T PLXNA3 Silent p.I686I 0.47 TCGA-D3-A2JO-06 X 154156856 154156856 G A F8 Silent p.L1737L 0.24 TCGA-D3-A2JO-06 X 154157027 154157027 C T F8 Missense_Mutation p.E1680K 0.10 tolerated(1) benign(0.001) TCGA-D3-A2JO-06 X 154194290 154194290 T C F8 Silent p.G466G 0.24 TCGA-D3-A2JO-06 X 18660047 18660047 C T RS1 3'UTR 0.43 TCGA-D3-A2JO-06 X 18836213 18836213 G A PPEF1 Missense_Mutation p.R484Q 0.19 deleterious(0.04) benign(0.185) TCGA-D3-A2JO-06 X 22065203 22065203 G A PHEX Missense_Mutation p.D75N 0.18 tolerated(0.18) benign(0.006) TCGA-D3-A2JO-06 X 3007547 3007547 G A ARSF Missense_Mutation p.E281K 0.14 tolerated(0.55) benign(0.004) TCGA-D3-A2JO-06 X 34962878 34962878 G A FAM47B Missense_Mutation p.E644K 0.23 tolerated(0.11) benign(0.187) TCGA-D3-A2JO-06 X 35974299 35974299 G A CXorf22 Missense_Mutation p.G466R 0.24 tolerated(0.09) benign(0.047) TCGA-D3-A2JO-06 X 37028887 37028887 G A FAM47C Missense_Mutation p.E802K 0.35 deleterious(0.05) benign(0.237) TCGA-D3-A2JO-06 X 41075484 41075484 T C USP9X Silent p.N1888N 0.23 TCGA-D3-A2JO-06 X 48826076 48826076 G A KCND1 Silent p.I201I 0.12 TCGA-D3-A2JO-06 X 48979934 48979934 C T GPKOW Missense_Mutation p.D47N 0.23 deleterious(0.02) probably_damaging(0.91) TCGA-D3-A2JO-06 X 49076953 49076953 C T CACNA1F Missense_Mutation p.G800S 0.13 tolerated(0.31) benign(0.002) TCGA-D3-A2JO-06 X 50054121 50054121 C T CCNB3 Silent p.S984S 0.11 TCGA-D3-A2JO-06 X 53245323 53245323 G A KDM5C Silent p.I238I 0.36 TCGA-D3-A2JO-06 X 53423149 53423152 CTTC - SMC1A Frame_Shift_Del p.E953Rfs*10 0.18 TCGA-D3-A2JO-06 X 53595718 53595718 C T HUWE1 Missense_Mutation p.R2214Q 0.10 possibly_damaging(0.895) TCGA-D3-A2JO-06 X 54578065 54578065 G T GNL3L Missense_Mutation p.G310W 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A2JO-06 X 55650610 55650610 G A FOXR2 Missense_Mutation p.E156K 0.18 deleterious(0.05) benign(0.323) TCGA-D3-A2JO-06 X 65242352 65242352 A G VSIG4 Intron 0.13 TCGA-D3-A2JO-06 X 65242404 65242404 C T VSIG4 Intron 0.32 TCGA-D3-A2JO-06 X 65479996 65479996 G A HEPH Missense_Mutation p.V1085I 0.23 deleterious(0.02) benign(0.05) TCGA-D3-A2JO-06 X 69262222 69262222 G A AWAT2 Missense_Mutation p.P221L 0.12 deleterious(0.01) benign(0.207) TCGA-D3-A2JO-06 X 70779216 70779216 C T OGT Missense_Mutation p.H568Y 0.22 deleterious(0) possibly_damaging(0.754) TCGA-D3-A2JO-06 X 71813013 71813013 C T PHKA1 Missense_Mutation p.G1062R 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 X 72673379 72673379 C T CDX4 Missense_Mutation p.R177C 0.29 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JO-06 X 73065887 73065887 C G XIST RNA 0.24 TCGA-D3-A2JO-06 X 9622287 9622287 C T TBL1X Missense_Mutation p.P46S 0.25 tolerated_low_confidence(0.44) benign(0.002) TCGA-D3-A2JO-06 X 99921858 99921858 G A SRPX2 Missense_Mutation p.D297N 0.13 deleterious(0) benign(0.055) TCGA-D3-A2JP-06 10 116045904 116045904 G A VWA2 Missense_Mutation p.D402N 0.43 tolerated(0.09) benign(0.073) TCGA-D3-A2JP-06 10 119027222 119027222 G A SLC18A2 Silent p.P387P 0.29 TCGA-D3-A2JP-06 10 124358388 124358388 G A DMBT1 Missense_Mutation p.D1019N 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A2JP-06 10 124591780 124591780 G A CUZD1 3'UTR 0.36 TCGA-D3-A2JP-06 10 134219629 134219629 C T PWWP2B Missense_Mutation p.S542L 0.25 deleterious(0) probably_damaging(0.956) TCGA-D3-A2JP-06 10 21141545 21141545 C T NEBL Missense_Mutation p.G313R 0.71 deleterious(0.01) benign(0.12) TCGA-D3-A2JP-06 10 43869146 43869146 C T FXYD4 5'UTR 0.38 TCGA-D3-A2JP-06 10 55913032 55913032 C T PCDH15 Missense_Mutation p.E538K 0.24 deleterious(0.04) possibly_damaging(0.781) TCGA-D3-A2JP-06 10 75567585 75567585 G A NDST2 Missense_Mutation p.P188S 0.35 deleterious(0.04) probably_damaging(0.986) TCGA-D3-A2JP-06 10 76784907 76784907 C T KAT6B Silent p.V1188V 0.35 TCGA-D3-A2JP-06 10 76784908 76784908 C T KAT6B Silent p.L1189L 0.35 TCGA-D3-A2JP-06 10 95116542 95116542 G A MYOF Missense_Mutation p.H1062Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JP-06 10 95335922 95335922 G A FFAR4 Silent p.L214L 0.24 TCGA-D3-A2JP-06 11 10483082 10483082 C T AMPD3 Missense_Mutation p.P15S 0.36 deleterious(0.01) benign(0.282) TCGA-D3-A2JP-06 11 113283578 113283578 C T DRD2 Missense_Mutation p.E280K 0.36 tolerated(0.55) benign(0.098) TCGA-D3-A2JP-06 11 119229734 119229734 G A USP2 Missense_Mutation p.P391L 0.44 deleterious(0.01) possibly_damaging(0.862) TCGA-D3-A2JP-06 11 119229735 119229735 G A USP2 Missense_Mutation p.P391S 0.44 tolerated(0.44) benign(0.035) TCGA-D3-A2JP-06 11 119290151 119290151 G A THY1 Silent p.S151S 0.35 TCGA-D3-A2JP-06 11 12315206 12315206 G A MICALCL Silent p.R76R 0.27 TCGA-D3-A2JP-06 11 123887086 123887086 G A OR10G4 Missense_Mutation p.G269R 0.44 tolerated(0.19) benign(0.03) TCGA-D3-A2JP-06 11 124789780 124789780 C T HEPN1 Missense_Mutation p.S45F 0.56 tolerated_low_confidence(0.09) probably_damaging(0.919) TCGA-D3-A2JP-06 11 1629423 1629423 C T KRTAP5-3 Missense_Mutation p.G65R 0.28 tolerated(0.17) unknown(0) TCGA-D3-A2JP-06 11 18291470 18291470 G A SAA1 3'UTR 0.32 TCGA-D3-A2JP-06 11 40137497 40137497 C T LRRC4C Missense_Mutation p.E116K 0.20 deleterious(0) probably_damaging(0.964) TCGA-D3-A2JP-06 11 45949026 45949026 G A GYLTL1B Missense_Mutation p.G496R 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 11 45975105 45975105 G T PHF21A Silent p.P355P 0.10 TCGA-D3-A2JP-06 11 48328285 48328285 G A OR4S1 Missense_Mutation p.E171K 0.39 tolerated(0.12) possibly_damaging(0.671) TCGA-D3-A2JP-06 11 56086116 56086116 C T OR8K3 Missense_Mutation p.L112F 0.36 tolerated_low_confidence(0.22) benign(0.035) TCGA-D3-A2JP-06 11 5664422 5664422 C T TRIM34 Missense_Mutation p.S317L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 11 5775970 5775970 C T OR52N4 5'UTR 0.33 TCGA-D3-A2JP-06 11 58207358 58207358 G A OR5B12 Silent p.F89F 0.28 TCGA-D3-A2JP-06 11 60265037 60265037 G A MS4A12 Missense_Mutation p.M82I 0.31 tolerated(0.52) benign(0) TCGA-D3-A2JP-06 11 62751136 62751136 C T SLC22A6 Silent p.L167L 0.30 TCGA-D3-A2JP-06 11 64699325 64699325 C T PPP2R5B Silent p.S367S 0.41 TCGA-D3-A2JP-06 11 65161522 65161522 C T FRMD8 Silent p.F122F 0.36 TCGA-D3-A2JP-06 11 66192030 66192030 C T NPAS4 Missense_Mutation p.P557S 0.21 tolerated_low_confidence(0.26) benign(0) TCGA-D3-A2JP-06 11 66807332 66807332 C T SYT12 Silent p.S93S 0.36 TCGA-D3-A2JP-06 11 66807333 66807333 C T SYT12 Missense_Mutation p.R94C 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.794) TCGA-D3-A2JP-06 11 78413143 78413143 G A TENM4 Silent p.L1505L 0.45 TCGA-D3-A2JP-06 11 7847104 7847104 C T OR5P3 Missense_Mutation p.G139E 0.44 tolerated(0.09) benign(0.003) TCGA-D3-A2JP-06 11 7949332 7949332 C T OR10A6 Missense_Mutation p.R293Q 0.33 deleterious(0) benign(0.119) TCGA-D3-A2JP-06 11 93837781 93837781 G A HEPHL1 Missense_Mutation p.E924K 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 12 101755832 101755832 G A UTP20 Missense_Mutation p.M1928I 0.40 tolerated(0.11) benign(0.003) TCGA-D3-A2JP-06 12 110760812 110760812 C T ATP2A2 Missense_Mutation p.P160L 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 12 113724876 113724876 C T TPCN1 Silent p.V609V 0.23 TCGA-D3-A2JP-06 12 117993065 117993065 G A KSR2 Missense_Mutation p.P476L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 12 13716619 13716619 C T GRIN2B Missense_Mutation p.D1185N 0.38 tolerated(0.17) benign(0.343) TCGA-D3-A2JP-06 12 13717242 13717242 T A GRIN2B Missense_Mutation p.D977V 0.46 deleterious(0) possibly_damaging(0.841) TCGA-D3-A2JP-06 12 18847964 18847964 C T PLCZ1 Silent p.G447G 0.33 TCGA-D3-A2JP-06 12 50025232 50025232 C T PRPF40B Missense_Mutation p.P45S 0.20 tolerated(0.08) unknown(0) TCGA-D3-A2JP-06 12 56847477 56847477 G A MIP Silent p.F141F 0.38 TCGA-D3-A2JP-06 12 57861912 57861912 C T GLI1 Missense_Mutation p.R405W 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JP-06 12 59266385 59266385 G A LRIG3 Missense_Mutation p.P1110L 0.55 tolerated_low_confidence(0.12) benign(0.11) TCGA-D3-A2JP-06 12 6804720 6804720 C T PIANP Missense_Mutation p.G235R 0.21 tolerated_low_confidence(0.15) probably_damaging(0.979) TCGA-D3-A2JP-06 12 81688696 81688696 G A PPFIA2 Missense_Mutation p.P948L 0.35 deleterious(0) probably_damaging(0.946) TCGA-D3-A2JP-06 12 97136223 97136223 G A C12orf55 Missense_Mutation p.E2360K 0.37 tolerated(0.07) benign(0.001) TCGA-D3-A2JP-06 13 23915544 23915544 G A SACS Missense_Mutation p.S824L 0.38 benign(0.364) TCGA-D3-A2JP-06 13 24823957 24823957 G A SPATA13 Missense_Mutation p.E666K 0.42 tolerated(0.06) benign(0.127) TCGA-D3-A2JP-06 13 32893249 32893249 C T BRCA2 Missense_Mutation p.L35F 0.32 deleterious(0) possibly_damaging(0.733) TCGA-D3-A2JP-06 13 42876436 42876436 T C AKAP11 Missense_Mutation p.V1185A 0.62 tolerated(0.4) benign(0.008) TCGA-D3-A2JP-06 13 76100660 76100660 T C COMMD6 3'UTR 0.38 TCGA-D3-A2JP-06 14 101500125 101500125 C T MIR495 RNA 0.50 TCGA-D3-A2JP-06 14 107219119 107219119 C T IGHV3-74 Missense_Mutation p.G4E 0.45 tolerated_low_confidence(0.42) benign(0.017) TCGA-D3-A2JP-06 14 20216483 20216483 G A OR4Q3 Missense_Mutation p.M299I 0.67 tolerated(0.19) benign(0.003) TCGA-D3-A2JP-06 14 20248886 20248886 C T OR4M1 Silent p.I135I 0.60 TCGA-D3-A2JP-06 14 20612593 20612593 G A OR4N5 Silent p.K233K 0.58 TCGA-D3-A2JP-06 14 22363109 22363109 C T TRAV8-4 Silent p.N80N 0.59 TCGA-D3-A2JP-06 14 22521135 22521135 C T TRAV21 Silent p.L52L 0.73 TCGA-D3-A2JP-06 14 22592173 22592173 G A TRAV26-1 Silent p.K86K 0.60 TCGA-D3-A2JP-06 14 28734154 28734154 C T BNIP3P1 RNA 0.68 TCGA-D3-A2JP-06 14 70712768 70712768 C T ADAM21P1 RNA 0.26 TCGA-D3-A2JP-06 14 70925826 70925826 G A ADAM21 Missense_Mutation p.G537E 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A2JP-06 14 75179879 75179879 G A FCF1 5'UTR 0.51 TCGA-D3-A2JP-06 14 90651018 90651018 C T KCNK13 Missense_Mutation p.P300S 0.43 tolerated(0.86) benign(0.004) TCGA-D3-A2JP-06 14 94120313 94120313 C T UNC79 Missense_Mutation p.S1937L 0.22 tolerated(0.27) benign(0.002) TCGA-D3-A2JP-06 14 96922720 96922720 G A AK7 Missense_Mutation p.G379R 0.61 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 15 28422610 28422610 G A HERC2 Missense_Mutation p.S3070L 0.44 probably_damaging(1) TCGA-D3-A2JP-06 15 30011141 30011141 G T TJP1 Missense_Mutation p.Q1069K 0.07 deleterious_low_confidence(0.04) benign(0.056) TCGA-D3-A2JP-06 15 43499625 43499625 C T EPB42 Missense_Mutation p.D394N 0.18 tolerated(0.15) benign(0.037) TCGA-D3-A2JP-06 15 59139614 59139614 G A FAM63B Missense_Mutation p.R496Q 0.26 tolerated(0.1) possibly_damaging(0.801) TCGA-D3-A2JP-06 15 65946287 65946287 C T SLC24A1 Missense_Mutation p.S1057F 0.23 benign(0.246) TCGA-D3-A2JP-06 15 75109015 75109015 C T LMAN1L Missense_Mutation p.P161S 0.19 tolerated(0.81) benign(0.048) TCGA-D3-A2JP-06 15 83791518 83791518 G A TM6SF1 Missense_Mutation p.G164E 0.56 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JP-06 15 86801226 86801226 G A AGBL1 Silent p.V265V 0.20 TCGA-D3-A2JP-06 15 90246441 90246441 C T WDR93 Intron 0.39 TCGA-D3-A2JP-06 16 20559473 20559473 C T ACSM2B Missense_Mutation p.G337R 0.39 deleterious(0) possibly_damaging(0.451) TCGA-D3-A2JP-06 16 21080788 21080788 C T DNAH3 Missense_Mutation p.G1110E 0.33 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JP-06 16 2283184 2283184 G A E4F1 Silent p.E352E 0.20 TCGA-D3-A2JP-06 16 3254843 3254843 C T OR1F1 Silent p.I199I 0.47 TCGA-D3-A2JP-06 16 343690 343690 G A AXIN1 Missense_Mutation p.H662Y 0.51 tolerated(1) benign(0.006) TCGA-D3-A2JP-06 16 87367562 87367562 C T FBXO31 Missense_Mutation p.G443R 0.45 tolerated(0.13) possibly_damaging(0.536) TCGA-D3-A2JP-06 16 90124278 90124278 C T PRDM7 3'UTR 0.62 TCGA-D3-A2JP-06 16 984322 984322 C G LMF1 Intron 0.33 TCGA-D3-A2JP-06 17 15518999 15518999 G A RP11-385D13.1 Silent p.A520A 0.38 TCGA-D3-A2JP-06 17 15519000 15519000 G T RP11-385D13.1 Missense_Mutation p.A520D 0.37 tolerated_low_confidence(0.16) possibly_damaging(0.662) TCGA-D3-A2JP-06 17 27893340 27893340 G A ABHD15 Silent p.L215L 0.33 TCGA-D3-A2JP-06 17 29162841 29162841 C G ATAD5 Missense_Mutation p.S581C 0.18 tolerated(0.12) benign(0.003) TCGA-D3-A2JP-06 17 29162877 29162877 C G ATAD5 Nonsense_Mutation p.S593* 0.20 TCGA-D3-A2JP-06 17 30325968 30325968 G A SUZ12 Silent p.L722L 0.22 TCGA-D3-A2JP-06 17 33679391 33679391 G A SLFN11 Missense_Mutation p.P897L 0.25 tolerated_low_confidence(0.76) benign(0) TCGA-D3-A2JP-06 17 39122700 39122700 G A KRT39 Missense_Mutation p.P137S 0.14 tolerated(0.12) probably_damaging(0.956) TCGA-D3-A2JP-06 17 39411699 39411699 C T KRTAP9-9 Missense_Mutation p.P21L 0.29 deleterious(0.02) unknown(0) TCGA-D3-A2JP-06 17 41131281 41131281 G A PTGES3L-AARSD1 Missense_Mutation p.S108F 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A2JP-06 17 4646597 4646597 G A ZMYND15 Splice_Site p.X382_splice 0.45 TCGA-D3-A2JP-06 17 61498624 61498624 G A TANC2 Missense_Mutation p.E1761K 0.36 deleterious_low_confidence(0.02) benign(0.091) TCGA-D3-A2JP-06 17 61623084 61623084 G A KCNH6 Missense_Mutation p.E936K 0.15 tolerated_low_confidence(0.1) benign(0.005) TCGA-D3-A2JP-06 17 61995207 61995207 G A GH1 Silent p.F123F 0.63 TCGA-D3-A2JP-06 17 68128684 68128684 C T KCNJ16 Silent p.L152L 0.15 TCGA-D3-A2JP-06 17 70120449 70120449 C T SOX9 Missense_Mutation p.S484F 0.39 deleterious(0.03) benign(0.244) TCGA-D3-A2JP-06 17 73949653 73949655 AAG - ACOX1 In_Frame_Del p.T274_Y275delinsN 0.10 TCGA-D3-A2JP-06 17 74533576 74533577 CG T CYGB Frame_Shift_Del p.S16Rfs*32 0.09 TCGA-D3-A2JP-06 17 78319813 78319813 C T RNF213 Missense_Mutation p.P2560S 0.39 probably_damaging(1) TCGA-D3-A2JP-06 18 20815896 20815896 C T CABLES1 Missense_Mutation p.A408V 0.31 tolerated(0.14) benign(0.213) TCGA-D3-A2JP-06 18 23872342 23872342 C T TAF4B Missense_Mutation p.P575S 0.29 tolerated(0.12) benign(0.004) TCGA-D3-A2JP-06 18 29867642 29867642 G A GAREM Silent p.F306F 0.32 TCGA-D3-A2JP-06 18 34647250 34647250 C T KIAA1328 Missense_Mutation p.P325L 0.31 tolerated(0.33) benign(0.39) TCGA-D3-A2JP-06 18 61322951 61322951 G A SERPINB3 Silent p.F371F 0.33 TCGA-D3-A2JP-06 18 61654137 61654137 C T SERPINB8 Silent p.F250F 0.46 TCGA-D3-A2JP-06 18 71749176 71749176 C T FBXO15 Missense_Mutation p.D417N 0.39 tolerated(0.2) benign(0.006) TCGA-D3-A2JP-06 18 74639998 74639998 G A ZNF236 Silent p.Q1508Q 0.37 TCGA-D3-A2JP-06 18 74639999 74639999 G A ZNF236 Missense_Mutation p.A1509T 0.36 deleterious(0.01) possibly_damaging(0.77) TCGA-D3-A2JP-06 19 12958212 12958212 G A MAST1 Missense_Mutation p.E146K 0.31 deleterious(0) benign(0.435) TCGA-D3-A2JP-06 19 15376315 15376315 G A BRD4 Silent p.I233I 0.38 TCGA-D3-A2JP-06 19 15569352 15569352 G A RASAL3 Silent p.P259P 0.56 TCGA-D3-A2JP-06 19 15807832 15807832 G A CYP4F12 Silent p.L504L 0.41 TCGA-D3-A2JP-06 19 17881371 17881371 G A FCHO1 Silent p.Q158Q 0.45 TCGA-D3-A2JP-06 19 17927640 17927640 C T INSL3 3'UTR 0.33 TCGA-D3-A2JP-06 19 18322646 18322646 C T PDE4C Missense_Mutation p.G572R 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 19 18583682 18583682 G A ELL Missense_Mutation p.S49L 0.35 deleterious(0.03) benign(0.438) TCGA-D3-A2JP-06 19 19655192 19655192 G A CILP2 Missense_Mutation p.R613Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 19 22157600 22157600 G A ZNF208 Missense_Mutation p.S79F 0.22 deleterious(0.03) benign(0.117) TCGA-D3-A2JP-06 19 33639799 33639799 C T WDR88 Missense_Mutation p.T221I 0.44 tolerated(0.12) benign(0.091) TCGA-D3-A2JP-06 19 35835825 35835825 G A CD22 Missense_Mutation p.R710Q 0.34 tolerated(0.52) benign(0.006) TCGA-D3-A2JP-06 19 36339065 36339065 G A NPHS1 Missense_Mutation p.P440S 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 19 43372207 43372207 G T PSG1 3'UTR 0.14 TCGA-D3-A2JP-06 19 43439843 43439843 C T PSG7 Missense_Mutation p.G48E 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JP-06 19 43679501 43679501 C T PSG5 Missense_Mutation p.G277E 0.18 deleterious(0.04) benign(0.223) TCGA-D3-A2JP-06 19 44933745 44933745 G A ZNF229 Missense_Mutation p.P404L 0.37 tolerated(0.11) benign(0.04) TCGA-D3-A2JP-06 19 45489774 45489774 A G CLPTM1 Missense_Mutation p.N245S 0.30 tolerated(0.09) benign(0.305) TCGA-D3-A2JP-06 19 46509959 46509959 C T CCDC61 Missense_Mutation p.S125F 0.45 deleterious(0) probably_damaging(0.988) TCGA-D3-A2JP-06 19 49012191 49012191 G A LMTK3 Silent p.P187P 0.27 TCGA-D3-A2JP-06 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.33 tolerated(0.19) benign(0.004) TCGA-D3-A2JP-06 19 52869199 52869199 C T ZNF610 Missense_Mutation p.P190S 0.14 tolerated(0.16) benign(0.006) TCGA-D3-A2JP-06 19 55294979 55294979 G A KIR2DL1 Missense_Mutation p.A287T 0.36 deleterious(0.01) benign(0.031) TCGA-D3-A2JP-06 19 56321408 56321408 C T NLRP11 Missense_Mutation p.E190K 0.34 deleterious(0.04) benign(0.303) TCGA-D3-A2JP-06 19 56539225 56539225 G A NLRP5 Silent p.R542R 0.45 TCGA-D3-A2JP-06 19 7830870 7830870 G A CLEC4M Silent p.R187R 0.32 TCGA-D3-A2JP-06 19 8130862 8130862 C T FBN3 Missense_Mutation p.G2791R 0.34 tolerated(0.38) benign(0.007) TCGA-D3-A2JP-06 19 8808406 8808406 G A ACTL9 Missense_Mutation p.H216Y 0.26 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A2JP-06 19 9049655 9049655 G A MUC16 Missense_Mutation p.S10659L 0.37 benign(0.097) TCGA-D3-A2JP-06 19 9058623 9058623 G A MUC16 Missense_Mutation p.P9608L 0.43 unknown(0) TCGA-D3-A2JP-06 19 9085314 9085314 C T MUC16 Silent p.P2167P 0.34 TCGA-D3-A2JP-06 1 110038845 110038845 C T CYB561D1 Silent p.S240S 0.31 TCGA-D3-A2JP-06 1 1118394 1118394 C T TTLL10 Missense_Mutation p.P352L 0.50 tolerated(0.07) possibly_damaging(0.679) TCGA-D3-A2JP-06 1 114254404 114254404 C A PHTF1 Silent p.L337L 0.09 TCGA-D3-A2JP-06 1 12854245 12854245 G A PRAMEF1 Missense_Mutation p.E157K 0.38 tolerated(0.34) probably_damaging(0.941) TCGA-D3-A2JP-06 1 151779937 151779937 C T RORC 3'UTR 0.55 TCGA-D3-A2JP-06 1 159283771 159283771 G A OR10J3 Missense_Mutation p.L227F 0.19 deleterious(0.02) possibly_damaging(0.521) TCGA-D3-A2JP-06 1 160604530 160604530 G A SLAMF1 Silent p.S191S 0.43 TCGA-D3-A2JP-06 1 200974494 200974494 G A KIF21B Missense_Mutation p.S225F 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A2JP-06 1 204197307 204197308 GG - PLEKHA6 Frame_Shift_Del p.Q979Gfs*14 0.25 TCGA-D3-A2JP-06 1 205904882 205904882 C T SLC26A9 Missense_Mutation p.E23K 0.21 tolerated(0.12) probably_damaging(0.968) TCGA-D3-A2JP-06 1 22033010 22033010 G A USP48 Missense_Mutation p.P721S 0.50 tolerated(0.61) benign(0.007) TCGA-D3-A2JP-06 1 23222924 23222924 C T EPHB2 Missense_Mutation p.A574V 0.31 deleterious(0.04) benign(0.023) TCGA-D3-A2JP-06 1 23222925 23222925 T C EPHB2 Silent p.A574A 0.30 TCGA-D3-A2JP-06 1 246810825 246810825 G A CNST Missense_Mutation p.R441H 0.39 tolerated(0.57) benign(0) TCGA-D3-A2JP-06 1 247464421 247464421 G A ZNF496 Silent p.S388S 0.25 TCGA-D3-A2JP-06 1 26669245 26669245 C T AIM1L Nonsense_Mutation p.W194* 0.15 TCGA-D3-A2JP-06 1 32687997 32687997 T G EIF3I 5'UTR 0.11 TCGA-D3-A2JP-06 1 46501426 46501426 G A MAST2 Silent p.K1695K 0.41 TCGA-D3-A2JP-06 1 57491659 57491659 G C DAB1 Missense_Mutation p.P261A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JP-06 1 62675689 62675689 G A L1TD1 Missense_Mutation p.E415K 0.62 deleterious(0.04) unknown(0) TCGA-D3-A2JP-06 1 65344732 65344732 G A JAK1 Missense_Mutation p.S102F 0.35 deleterious(0) possibly_damaging(0.553) TCGA-D3-A2JP-06 1 6634946 6634946 G A TAS1R1 Missense_Mutation p.G252S 0.27 tolerated(0.54) benign(0.206) TCGA-D3-A2JP-06 1 6634947 6634947 G A TAS1R1 Missense_Mutation p.G252D 0.30 tolerated(0.1) possibly_damaging(0.864) TCGA-D3-A2JP-06 1 70541791 70541791 C T LRRC7 Missense_Mutation p.S1383F 0.22 deleterious(0.01) probably_damaging(0.923) TCGA-D3-A2JP-06 1 75039116 75039116 G A C1orf173 Nonsense_Mutation p.Q760* 0.16 TCGA-D3-A2JP-06 20 30496448 30496448 C T TTLL9 Silent p.F87F 0.33 TCGA-D3-A2JP-06 20 31577456 31577456 C T SUN5 Missense_Mutation p.E195K 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A2JP-06 20 34775631 34775631 C T EPB41L1 Silent p.F273F 0.32 TCGA-D3-A2JP-06 20 35207364 35207364 C T TGIF2 Silent p.L63L 0.21 TCGA-D3-A2JP-06 20 41408906 41408906 G A PTPRT Missense_Mutation p.P174S 0.27 tolerated(0.8) benign(0.019) TCGA-D3-A2JP-06 20 44313574 44313574 G T WFDC10B Silent p.P55P 0.48 TCGA-D3-A2JP-06 20 52601880 52601880 G A BCAS1 Silent p.T362T 0.37 TCGA-D3-A2JP-06 20 54956548 54956548 C T AURKA Missense_Mutation p.G216R 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 20 9523346 9523346 T G PAK7 Missense_Mutation p.I631L 0.12 deleterious(0) probably_damaging(0.985) TCGA-D3-A2JP-06 21 11038784 11038784 C T BAGE2 RNA 0.07 TCGA-D3-A2JP-06 21 11038785 11038785 C T BAGE2 RNA 0.07 TCGA-D3-A2JP-06 21 31720737 31720737 C T KRTAP23-1 Missense_Mutation p.G63E 0.25 unknown(0) TCGA-D3-A2JP-06 21 43783454 43783454 G A TFF1 Nonsense_Mutation p.Q50* 0.27 TCGA-D3-A2JP-06 21 47987584 47987584 C T DIP2A 3'UTR 0.48 TCGA-D3-A2JP-06 22 19055627 19055627 G A DGCR2 Missense_Mutation p.P105L 0.32 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-D3-A2JP-06 22 24718497 24718497 A G SPECC1L Missense_Mutation p.S517G 0.34 deleterious(0) probably_damaging(0.986) TCGA-D3-A2JP-06 22 30974944 30974944 C T PES1 Silent p.K521K 0.26 TCGA-D3-A2JP-06 22 31338215 31338215 G A MORC2 Missense_Mutation p.P95L 0.32 deleterious(0.04) benign(0.443) TCGA-D3-A2JP-06 22 37398071 37398071 C T TEX33 Missense_Mutation p.R99Q 0.38 deleterious(0) benign(0.417) TCGA-D3-A2JP-06 22 40681768 40681768 C T TNRC6B Silent p.S1234S 0.40 TCGA-D3-A2JP-06 22 45929726 45929726 G A FBLN1 Silent p.R244R 0.22 TCGA-D3-A2JP-06 22 45929727 45929727 G A FBLN1 Missense_Mutation p.D245N 0.22 tolerated(0.06) probably_damaging(0.945) TCGA-D3-A2JP-06 2 100210279 100210279 C T AFF3 Missense_Mutation p.G640E 0.76 tolerated(0.83) probably_damaging(0.94) TCGA-D3-A2JP-06 2 102955354 102955354 G A IL1RL1 Missense_Mutation p.G40E 0.24 tolerated(1) benign(0.02) TCGA-D3-A2JP-06 2 119752009 119752009 G A MARCO Silent p.E492E 0.56 TCGA-D3-A2JP-06 2 143676226 143676226 G A KYNU Missense_Mutation p.G73E 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 2 153475652 153475652 C T FMNL2 Missense_Mutation p.S536L 0.25 benign(0.003) TCGA-D3-A2JP-06 2 160084340 160084340 T A TANC1 Missense_Mutation p.M1305K 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 2 167284358 167284358 T C SCN7A Silent p.V931V 0.31 TCGA-D3-A2JP-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.43 TCGA-D3-A2JP-06 2 171375994 171375994 C T MYO3B Silent p.S1173S 0.36 TCGA-D3-A2JP-06 2 179585787 179585787 C T TTN Nonsense_Mutation p.W7653* 0.16 TCGA-D3-A2JP-06 2 179634931 179634931 C T TTN Missense_Mutation p.E2833K 0.52 TCGA-D3-A2JP-06 2 183841668 183841668 C T NCKAP1 Missense_Mutation p.E485K 0.30 deleterious(0.02) benign(0.056) TCGA-D3-A2JP-06 2 185798364 185798364 G A ZNF804A Missense_Mutation p.R97Q 0.55 deleterious(0) probably_damaging(0.915) TCGA-D3-A2JP-06 2 187703734 187703734 A T ZSWIM2 Missense_Mutation p.I149N 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 2 196729544 196729544 C T DNAH7 Missense_Mutation p.E2279K 0.30 deleterious(0.01) benign(0.359) TCGA-D3-A2JP-06 2 208773276 208773276 G A PLEKHM3 Nonsense_Mutation p.Q638* 0.48 TCGA-D3-A2JP-06 2 211319997 211319997 C - LANCL1 Frame_Shift_Del p.D81Tfs*7 0.15 TCGA-D3-A2JP-06 2 21236077 21236077 T C APOB Missense_Mutation p.M1391V 0.55 benign(0.001) TCGA-D3-A2JP-06 2 212495299 212495299 C T ERBB4 Missense_Mutation p.G656E 0.15 deleterious(0.01) possibly_damaging(0.707) TCGA-D3-A2JP-06 2 220164775 220164775 G T PTPRN Silent p.P456P 0.39 TCGA-D3-A2JP-06 2 227886863 227886863 C T COL4A4 Missense_Mutation p.D1373N 0.22 unknown(0) TCGA-D3-A2JP-06 2 233001212 233001212 C T DIS3L2 Nonsense_Mutation p.R245* 0.15 TCGA-D3-A2JP-06 2 235951000 235951000 C T SH3BP4 Silent p.F529F 0.59 TCGA-D3-A2JP-06 2 237308114 237308114 C T IQCA1 Nonsense_Mutation p.W384* 0.15 TCGA-D3-A2JP-06 2 26683795 26683795 G A OTOF Silent p.S1879S 0.44 TCGA-D3-A2JP-06 2 70680389 70680389 G A TGFA Missense_Mutation p.L146F 0.33 tolerated_low_confidence(0.11) benign(0.021) TCGA-D3-A2JP-06 2 71742757 71742757 G A DYSF Missense_Mutation p.R255K 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A2JP-06 3 108129532 108129532 C T MYH15 Missense_Mutation p.E1485K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JP-06 3 121613396 121613396 C T SLC15A2 Nonsense_Mutation p.R25* 0.41 TCGA-D3-A2JP-06 3 121981094 121981094 C T CASR Silent p.V404V 0.24 TCGA-D3-A2JP-06 3 123452564 123452564 C T MYLK Missense_Mutation p.E427K 0.17 deleterious(0) benign(0.156) TCGA-D3-A2JP-06 3 124437996 124437996 C T RP11-71H17.7 5'Flank 0.43 TCGA-D3-A2JP-06 3 126180782 126180782 G A ZXDC Missense_Mutation p.P575S 0.44 tolerated(0.1) benign(0.047) TCGA-D3-A2JP-06 3 14485187 14485187 G A SLC6A6 Silent p.K15K 0.23 TCGA-D3-A2JP-06 3 148614368 148614368 C T CPA3 Silent p.A376A 0.50 TCGA-D3-A2JP-06 3 161221394 161221394 C T OTOL1 Silent p.L366L 0.62 TCGA-D3-A2JP-06 3 180694165 180694165 C T FXR1 3'UTR 0.50 TCGA-D3-A2JP-06 3 183900603 183900603 C T AP2M1 Missense_Mutation p.P374S 0.37 tolerated(1) benign(0.002) TCGA-D3-A2JP-06 3 183900604 183900604 C T AP2M1 Missense_Mutation p.P374L 0.37 tolerated(0.09) benign(0.002) TCGA-D3-A2JP-06 3 184297636 184297636 C T EPHB3 Missense_Mutation p.R696W 0.35 deleterious(0) probably_damaging(0.989) TCGA-D3-A2JP-06 3 188242563 188242563 T C LPP Silent p.P139P 0.24 TCGA-D3-A2JP-06 3 194336417 194336417 G A TMEM44 Missense_Mutation p.L312F 0.34 deleterious(0) probably_damaging(0.943) TCGA-D3-A2JP-06 3 195009893 195009893 A G ACAP2 Silent p.L711L 0.32 TCGA-D3-A2JP-06 3 2908551 2908551 G A CNTN4 Silent p.G190G 0.22 TCGA-D3-A2JP-06 3 39162558 39162558 C T TTC21A Missense_Mutation p.S332L 0.40 tolerated(0.08) benign(0.1) TCGA-D3-A2JP-06 3 48461146 48461146 G A PLXNB1 Missense_Mutation p.P850L 0.40 tolerated(0.33) benign(0.009) TCGA-D3-A2JP-06 3 4853113 4853113 A G ITPR1 Silent p.V2464V 0.27 TCGA-D3-A2JP-06 3 4853114 4853114 G A ITPR1 Missense_Mutation p.D2465N 0.27 deleterious(0.04) benign(0.042) TCGA-D3-A2JP-06 3 48697976 48697976 G A CELSR3 Missense_Mutation p.P698S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 3 52556956 52556956 G A STAB1 Missense_Mutation p.D2304N 0.44 deleterious(0) probably_damaging(0.994) TCGA-D3-A2JP-06 3 54958924 54958924 G A LRTM1 Missense_Mutation p.S109L 0.31 tolerated(0.57) benign(0.21) TCGA-D3-A2JP-06 3 55108195 55108195 C T CACNA2D3 Missense_Mutation p.L1080F 0.38 tolerated(0.82) benign(0.006) TCGA-D3-A2JP-06 3 58107012 58107012 G A FLNB Missense_Mutation p.G970R 0.20 deleterious(0) probably_damaging(0.982) TCGA-D3-A2JP-06 4 10445685 10445685 G A ZNF518B Silent p.T756T 0.31 TCGA-D3-A2JP-06 4 126328195 126328195 C T FAT4 Missense_Mutation p.S1823L 0.17 probably_damaging(0.991) TCGA-D3-A2JP-06 4 148463717 148463717 G A EDNRA Missense_Mutation p.D411N 0.37 tolerated(0.15) benign(0.06) TCGA-D3-A2JP-06 4 25026478 25026478 C T LGI2 Missense_Mutation p.R126K 0.34 tolerated(1) benign(0.007) TCGA-D3-A2JP-06 4 25125802 25125802 G A SEPSECS Silent p.F419F 0.19 TCGA-D3-A2JP-06 4 38829222 38829222 G A TLR6 Missense_Mutation p.R625W 0.16 tolerated(0.21) possibly_damaging(0.841) TCGA-D3-A2JP-06 4 40763240 40763240 G A NSUN7 Missense_Mutation p.R137K 0.41 deleterious(0.03) possibly_damaging(0.831) TCGA-D3-A2JP-06 4 47548647 47548647 G A ATP10D Missense_Mutation p.R468K 0.18 deleterious(0.01) benign(0.133) TCGA-D3-A2JP-06 4 68795740 68795740 C T TMPRSS11A Silent p.V116V 0.09 TCGA-D3-A2JP-06 4 69097045 69097045 C T TMPRSS11B Missense_Mutation p.G188R 0.19 deleterious(0.01) possibly_damaging(0.77) TCGA-D3-A2JP-06 4 74279343 74279343 C T ALB Silent p.F350F 0.20 TCGA-D3-A2JP-06 4 89579585 89579585 C T HERC3 Silent p.I363I 0.18 TCGA-D3-A2JP-06 5 110077790 110077790 G A SLC25A46 Missense_Mutation p.S109N 0.23 deleterious(0) possibly_damaging(0.795) TCGA-D3-A2JP-06 5 115319054 115319054 C T AQPEP Silent p.L256L 0.54 TCGA-D3-A2JP-06 5 118970376 118970376 G A FAM170A Silent p.R311R 0.38 TCGA-D3-A2JP-06 5 120021677 120021677 C T PRR16 Missense_Mutation p.S40F 0.31 deleterious_low_confidence(0.02) probably_damaging(0.917) TCGA-D3-A2JP-06 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.41 TCGA-D3-A2JP-06 5 140536860 140536860 G A PCDHB17 Silent p.G428G 0.30 TCGA-D3-A2JP-06 5 140573489 140573489 C T PCDHB10 Missense_Mutation p.S455F 0.36 deleterious_low_confidence(0.01) benign(0.015) TCGA-D3-A2JP-06 5 140774082 140774082 C T PCDHGA8 Missense_Mutation p.P568S 0.24 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-D3-A2JP-06 5 150657223 150657223 C T SLC36A3 Splice_Site p.X423_splice 0.33 TCGA-D3-A2JP-06 5 151239414 151239414 G A GLRA1 Silent p.F136F 0.49 TCGA-D3-A2JP-06 5 156378580 156378580 C T TIMD4 Missense_Mutation p.E208K 0.34 tolerated(0.62) benign(0.004) TCGA-D3-A2JP-06 5 156456847 156456847 G A HAVCR1 Missense_Mutation p.S331L 0.39 tolerated(0.09) possibly_damaging(0.765) TCGA-D3-A2JP-06 5 176025032 176025032 G A GPRIN1 Missense_Mutation p.P602S 0.53 tolerated(0.17) possibly_damaging(0.526) TCGA-D3-A2JP-06 5 176025033 176025033 G A GPRIN1 Silent p.I601I 0.49 TCGA-D3-A2JP-06 5 35873648 35873648 G A IL7R Missense_Mutation p.E202K 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 5 38530715 38530715 G A LIFR Missense_Mutation p.S12F 0.44 tolerated_low_confidence(0.19) benign(0.002) TCGA-D3-A2JP-06 5 41842835 41842835 C T OXCT1 Missense_Mutation p.G205R 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 5 43446579 43446579 A G C5orf28 Silent p.T131T 0.30 TCGA-D3-A2JP-06 5 75913780 75913780 G C F2RL2 Missense_Mutation p.T251S 0.20 tolerated(0.66) benign(0.054) TCGA-D3-A2JP-06 5 78672008 78672008 G A HOMER1 Missense_Mutation p.R297W 0.34 deleterious(0) possibly_damaging(0.506) TCGA-D3-A2JP-06 6 100395747 100395747 G A MCHR2 Nonsense_Mutation p.R95* 0.21 TCGA-D3-A2JP-06 6 100838735 100838735 T - SIM1 Frame_Shift_Del p.K601Nfs*41 0.26 TCGA-D3-A2JP-06 6 100841753 100841753 G A SIM1 Missense_Mutation p.H394Y 0.50 tolerated(0.07) benign(0.369) TCGA-D3-A2JP-06 6 116752308 116752308 C T DSE Missense_Mutation p.P288S 0.31 tolerated(0.28) benign(0.241) TCGA-D3-A2JP-06 6 117704553 117704553 G A ROS1 Missense_Mutation p.S808L 0.30 deleterious(0) probably_damaging(0.93) TCGA-D3-A2JP-06 6 143090952 143090952 G A HIVEP2 Missense_Mutation p.R1642W 0.62 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 6 144263496 144263496 C T PLAGL1 Missense_Mutation p.E153K 0.25 deleterious(0) possibly_damaging(0.538) TCGA-D3-A2JP-06 6 168439243 168439243 G A KIF25 Missense_Mutation p.E110K 0.25 deleterious(0.02) probably_damaging(0.919) TCGA-D3-A2JP-06 6 24874004 24874004 G A FAM65B Missense_Mutation p.S42F 0.19 deleterious(0.01) possibly_damaging(0.575) TCGA-D3-A2JP-06 6 30680224 30680224 C T MDC1 Missense_Mutation p.V499M 0.40 tolerated(0.12) benign(0.01) TCGA-D3-A2JP-06 6 31962439 31962439 C T C4A Silent p.F919F 0.38 TCGA-D3-A2JP-06 6 35258483 35258483 C T ZNF76 Silent p.A205A 0.25 TCGA-D3-A2JP-06 6 47576971 47576971 C T CD2AP Missense_Mutation p.S582F 0.36 tolerated(0.06) benign(0.002) TCGA-D3-A2JP-06 6 52319004 52319006 CAC TA EFHC1 Frame_Shift_Del p.H279* 0.37 TCGA-D3-A2JP-06 6 57012296 57012296 C T ZNF451 Silent p.T471T 0.32 TCGA-D3-A2JP-06 6 62887095 62887095 G A KHDRBS2 Missense_Mutation p.P72S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A2JP-06 6 70049369 70049369 C T BAI3 Silent p.V1144V 0.26 TCGA-D3-A2JP-06 6 72678710 72678710 G A RIMS1 Silent p.K63K 0.12 TCGA-D3-A2JP-06 6 73751701 73751701 C T KCNQ5 Nonsense_Mutation p.R178* 0.50 TCGA-D3-A2JP-06 6 90363971 90363971 C T MDN1 Missense_Mutation p.M5191I 0.49 unknown(0) TCGA-D3-A2JP-06 7 123302492 123302492 G A LMOD2 Silent p.G284G 0.74 TCGA-D3-A2JP-06 7 128355457 128355457 C T FAM71F1 5'UTR 0.50 TCGA-D3-A2JP-06 7 137271890 137271890 G A DGKI Missense_Mutation p.P460S 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.65 deleterious(0) probably_damaging(0.967) TCGA-D3-A2JP-06 7 143018516 143018516 G C CLCN1 Missense_Mutation p.W164C 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A2JP-06 7 27140752 27140752 C T HOXA2 Missense_Mutation p.A242T 0.45 tolerated(0.16) benign(0.421) TCGA-D3-A2JP-06 7 27140753 27140753 C T HOXA2 Silent p.G241G 0.45 TCGA-D3-A2JP-06 7 27150085 27150085 C T HOXA3 Missense_Mutation p.G59R 0.29 tolerated(0.19) probably_damaging(0.947) TCGA-D3-A2JP-06 7 31904624 31904624 G A PDE1C Missense_Mutation p.H288Y 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 7 35244193 35244193 C T TBX20 Missense_Mutation p.E298K 0.44 tolerated(0.19) benign(0.137) TCGA-D3-A2JP-06 7 41729763 41729763 G A INHBA Missense_Mutation p.L256F 0.33 tolerated(0.14) probably_damaging(1) TCGA-D3-A2JP-06 7 42004782 42004782 G A GLI3 Silent p.L1297L 0.31 TCGA-D3-A2JP-06 7 42004783 42004783 G A GLI3 Silent p.G1296G 0.32 TCGA-D3-A2JP-06 7 42006170 42006170 G A GLI3 Missense_Mutation p.S834F 0.33 deleterious(0.04) possibly_damaging(0.453) TCGA-D3-A2JP-06 7 4201469 4201469 C T SDK1 Missense_Mutation p.S1594F 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A2JP-06 7 45005409 45005409 G A MYO1G Silent p.I736I 0.37 TCGA-D3-A2JP-06 7 5105259 5105259 C T RBAK 3'UTR 0.38 TCGA-D3-A2JP-06 7 55211060 55211060 G T EGFR Missense_Mutation p.L101F 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A2JP-06 7 57510016 57510016 C T ZNF716 Missense_Mutation p.P8S 0.45 deleterious_low_confidence(0.03) benign(0.306) TCGA-D3-A2JP-06 7 63720720 63720720 C T ZNF679 Missense_Mutation p.S54F 0.40 tolerated(1) possibly_damaging(0.9) TCGA-D3-A2JP-06 7 7421240 7421240 C T COL28A1 Missense_Mutation p.E714K 0.31 deleterious(0) benign(0.371) TCGA-D3-A2JP-06 7 82584366 82584366 G A PCLO Missense_Mutation p.S1968L 0.49 unknown(0) TCGA-D3-A2JP-06 7 82584459 82584459 C T PCLO Missense_Mutation p.R1937Q 0.46 unknown(0) TCGA-D3-A2JP-06 7 87135224 87135224 C T ABCB1 Missense_Mutation p.E1209K 0.39 deleterious(0) benign(0.125) TCGA-D3-A2JP-06 7 89861715 89861715 G A STEAP2 Missense_Mutation p.R417Q 0.36 deleterious(0.04) benign(0.158) TCGA-D3-A2JP-06 7 94947640 94947640 C T PON1 Missense_Mutation p.G47E 0.19 deleterious(0.04) benign(0.066) TCGA-D3-A2JP-06 7 98452871 98452871 G A TMEM130 Silent p.F265F 0.40 TCGA-D3-A2JP-06 7 99697359 99697359 C T MCM7 Silent p.R43R 0.30 TCGA-D3-A2JP-06 7 99746564 99746564 G A LAMTOR4 5'UTR 0.35 TCGA-D3-A2JP-06 7 99746565 99746565 G A LAMTOR4 5'UTR 0.35 TCGA-D3-A2JP-06 8 105456640 105456640 C T DPYS Missense_Mutation p.G210E 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JP-06 8 117954886 117954886 G A AARD Silent p.L138L 0.18 TCGA-D3-A2JP-06 8 119938803 119938803 C T TNFRSF11B Silent p.Q249Q 0.52 TCGA-D3-A2JP-06 8 134239694 134239694 C T WISP1 Missense_Mutation p.S282F 0.31 deleterious(0.05) benign(0.003) TCGA-D3-A2JP-06 8 144332304 144332304 G A ZFP41 Silent p.K97K 0.55 TCGA-D3-A2JP-06 8 195476 195476 T C ZNF596 Missense_Mutation p.L210P 0.25 deleterious(0) probably_damaging(0.937) TCGA-D3-A2JP-06 8 26237032 26237032 T C BNIP3L 5'Flank 0.43 TCGA-D3-A2JP-06 8 38123766 38123766 G T PPAPDC1B Missense_Mutation p.P176Q 0.11 tolerated(0.11) possibly_damaging(0.61) TCGA-D3-A2JP-06 8 42938323 42938323 G A FNTA Missense_Mutation p.G282E 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 8 53073958 53073958 C T ST18 Missense_Mutation p.R524Q 0.48 tolerated(0.72) benign(0.007) TCGA-D3-A2JP-06 8 86240763 86240763 G A CA1 3'UTR 0.19 TCGA-D3-A2JP-06 8 86240764 86240764 A C CA1 3'UTR 0.19 TCGA-D3-A2JP-06 9 125289385 125289385 T C OR1N1 Missense_Mutation p.N63S 0.55 tolerated(0.07) benign(0.022) TCGA-D3-A2JP-06 9 139113687 139113687 G A QSOX2 Missense_Mutation p.S259L 0.63 deleterious(0) possibly_damaging(0.848) TCGA-D3-A2JP-06 9 32500834 32500834 G A DDX58 Silent p.F70F 0.58 TCGA-D3-A2JP-06 9 35100138 35100138 G A STOML2 Missense_Mutation p.A322V 0.59 tolerated(0.07) benign(0.055) TCGA-D3-A2JP-06 9 43828117 43828117 T C CNTNAP3B Missense_Mutation p.F458S 0.58 deleterious(0) benign(0.115) TCGA-D3-A2JP-06 9 70999394 70999394 C T PGM5 Nonsense_Mutation p.R169* 0.57 TCGA-D3-A2JP-06 9 77300508 77300508 C T RORB Missense_Mutation p.P452S 0.58 tolerated(1) benign(0.008) TCGA-D3-A2JP-06 9 8317942 8317942 C T PTPRD Missense_Mutation p.D1891N 0.53 deleterious(0) probably_damaging(0.997) TCGA-D3-A2JP-06 X 107417781 107417781 G A COL4A6 Silent p.I1010I 0.47 TCGA-D3-A2JP-06 X 123587288 123587288 G A TENM1 Missense_Mutation p.R1335C 0.80 deleterious(0) probably_damaging(0.97) TCGA-D3-A2JP-06 X 130678510 130678510 C T OR13H1 Missense_Mutation p.L155F 0.76 tolerated(0.1) benign(0.367) TCGA-D3-A2JP-06 X 139865886 139865886 C T CDR1 Missense_Mutation p.G216R 0.66 tolerated(0.19) probably_damaging(0.979) TCGA-D3-A2JP-06 X 2933279 2933279 C T ARSH Silent p.L203L 0.89 TCGA-D3-A2JP-06 X 35821039 35821039 C T MAGEB16 Silent p.I242I 0.50 TCGA-D3-A2JP-06 X 47837101 47837101 T C ZNF182 Missense_Mutation p.I129V 0.67 tolerated(0.51) benign(0) TCGA-D3-A2JP-06 X 53268417 53268417 G A IQSEC2 Silent p.F1025F 0.76 TCGA-D3-A2JP-06 X 69261693 69261693 C T AWAT2 Missense_Mutation p.G323S 0.85 deleterious(0) probably_damaging(1) TCGA-D3-A2JP-06 X 73063782 73063782 C T XIST RNA 0.79 TCGA-D3-A2JP-06 X 86880675 86880675 G A KLHL4 Missense_Mutation p.M401I 0.75 tolerated(0.41) benign(0.012) TCGA-D3-A3BZ-06 10 27454438 27454438 A G MASTL Missense_Mutation p.T261A 0.08 tolerated(0.2) benign(0.013) TCGA-D3-A3BZ-06 10 43883047 43883047 C T HNRNPF Missense_Mutation p.V96M 0.09 deleterious(0.04) possibly_damaging(0.591) TCGA-D3-A3BZ-06 10 45498963 45498963 C G ZNF22 Missense_Mutation p.S49R 0.12 tolerated(0.55) benign(0.08) TCGA-D3-A3BZ-06 10 45498982 45498982 A G ZNF22 Missense_Mutation p.K56E 0.14 tolerated(0.47) probably_damaging(0.991) TCGA-D3-A3BZ-06 10 55587280 55587280 G A PCDH15 Nonsense_Mutation p.R1414* 0.10 TCGA-D3-A3BZ-06 10 87406826 87406826 G T GRID1 Intron 0.15 TCGA-D3-A3BZ-06 11 1264737 1264737 G A MUC5B Silent p.T2209T 0.28 TCGA-D3-A3BZ-06 11 22381014 22381014 G T SLC17A6 Missense_Mutation p.A172S 0.10 deleterious(0.03) possibly_damaging(0.822) TCGA-D3-A3BZ-06 11 46001496 46001496 G A PHF21A Missense_Mutation p.R59W 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3BZ-06 11 5255363 5255363 T G HBD Missense_Mutation p.N58T 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3BZ-06 11 5373366 5373366 T C OR51B6 Missense_Mutation p.L210P 0.08 deleterious(0) probably_damaging(0.933) TCGA-D3-A3BZ-06 11 5529328 5529328 C G UBQLN3 Missense_Mutation p.R487S 0.17 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-D3-A3BZ-06 11 5717766 5717766 A C TRIM22 Missense_Mutation p.K102Q 0.12 deleterious(0.01) benign(0.14) TCGA-D3-A3BZ-06 12 57828826 57828826 G A INHBC Missense_Mutation p.D53N 0.36 tolerated(0.31) benign(0.021) TCGA-D3-A3BZ-06 12 66786136 66786136 C G GRIP1 Missense_Mutation p.V754L 0.09 tolerated(0.31) benign(0.045) TCGA-D3-A3BZ-06 12 72013863 72013863 G A ZFC3H1 Missense_Mutation p.S1631L 0.31 tolerated(0.73) benign(0.003) TCGA-D3-A3BZ-06 12 80750654 80750654 A C OTOGL Missense_Mutation p.Q1984H 0.10 deleterious(0.04) benign(0.013) TCGA-D3-A3BZ-06 12 91502123 91502123 A G LUM Silent p.L212L 0.06 TCGA-D3-A3BZ-06 12 95926931 95926931 G C USP44 Missense_Mutation p.L368V 0.06 deleterious(0.05) possibly_damaging(0.908) TCGA-D3-A3BZ-06 14 20248923 20248923 T A OR4M1 Missense_Mutation p.S148T 0.06 tolerated(0.16) benign(0.099) TCGA-D3-A3BZ-06 14 33292622 33292622 A C AKAP6 Missense_Mutation p.H1868P 0.11 tolerated(0.15) benign(0.167) TCGA-D3-A3BZ-06 14 60600964 60600964 C G PCNXL4 3'UTR 0.05 TCGA-D3-A3BZ-06 15 102312676 102312676 T C RN7SL209P 3'Flank 0.08 TCGA-D3-A3BZ-06 15 25492431 25492431 C G SNORD115-40 3'Flank 0.08 TCGA-D3-A3BZ-06 15 52567822 52567822 G A MYO5C Silent p.V181V 0.07 TCGA-D3-A3BZ-06 16 31504903 31504903 C T C16orf58 Intron 0.07 TCGA-D3-A3BZ-06 16 66613633 66613633 G A CMTM2 Silent p.A41A 0.11 TCGA-D3-A3BZ-06 17 11515185 11515185 A G DNAH9 Intron 0.27 TCGA-D3-A3BZ-06 17 25639344 25639344 G T WSB1 Missense_Mutation p.Q405H 0.07 tolerated(0.12) benign(0.273) TCGA-D3-A3BZ-06 17 7758463 7758463 G C TMEM88 Missense_Mutation p.C24S 0.17 deleterious(0.01) possibly_damaging(0.448) TCGA-D3-A3BZ-06 18 31537451 31537451 A C NOL4 Missense_Mutation p.L423V 0.21 deleterious(0) probably_damaging(0.99) TCGA-D3-A3BZ-06 18 61471766 61471766 A C SERPINB7 Missense_Mutation p.K347T 0.20 tolerated(0.15) probably_damaging(1) TCGA-D3-A3BZ-06 19 13988290 13988290 G T NANOS3 Silent p.L76L 0.18 TCGA-D3-A3BZ-06 19 18377313 18377313 A G KIAA1683 Missense_Mutation p.V346A 0.08 tolerated(0.55) benign(0.001) TCGA-D3-A3BZ-06 19 58153368 58153368 G C ZNF211 Missense_Mutation p.G570A 0.12 deleterious(0) possibly_damaging(0.806) TCGA-D3-A3BZ-06 1 102270070 102270070 A G OLFM3 Silent p.T367T 0.12 TCGA-D3-A3BZ-06 1 155004049 155004049 C T DCST2 Splice_Site p.X247_splice 0.25 TCGA-D3-A3BZ-06 1 207110861 207110861 G C PIGR Missense_Mutation p.N208K 0.07 tolerated(0.52) benign(0.006) TCGA-D3-A3BZ-06 1 228493070 228493070 C G OBSCN Missense_Mutation p.A4838G 0.11 possibly_damaging(0.53) TCGA-D3-A3BZ-06 1 245018852 245018852 G A HNRNPU Silent p.G742G 0.05 TCGA-D3-A3BZ-06 1 79383605 79383605 T C ELTD1 Missense_Mutation p.K531R 0.09 tolerated(0.34) benign(0.253) TCGA-D3-A3BZ-06 1 85136353 85136353 T C SSX2IP Silent p.E63E 0.10 TCGA-D3-A3BZ-06 20 6022584 6022584 G C LRRN4 Missense_Mutation p.S436C 0.07 deleterious(0.01) possibly_damaging(0.797) TCGA-D3-A3BZ-06 2 172952991 172952991 C G DLX1 3'UTR 0.06 TCGA-D3-A3BZ-06 2 179600395 179600395 T G TTN Missense_Mutation p.Q4926H 0.06 TCGA-D3-A3BZ-06 2 29152468 29152468 A T WDR43 Silent p.G443G 0.15 TCGA-D3-A3BZ-06 2 97377656 97377656 C T LMAN2L Missense_Mutation p.R216H 0.05 deleterious(0) probably_damaging(1) TCGA-D3-A3BZ-06 3 108158593 108158593 T G MYH15 Missense_Mutation p.Q1042H 0.10 deleterious(0.03) benign(0.017) TCGA-D3-A3BZ-06 3 167507139 167507139 T G SERPINI1 Missense_Mutation p.S75A 0.23 tolerated(1) benign(0.001) TCGA-D3-A3BZ-06 3 192517116 192517116 A C MB21D2 Missense_Mutation p.F179V 0.05 tolerated(0.06) benign(0.148) TCGA-D3-A3BZ-06 3 39374061 39374061 C G CCR8 Missense_Mutation p.S80C 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A3BZ-06 3 64139008 64139008 G A PRICKLE2 Nonsense_Mutation p.R213* 0.10 TCGA-D3-A3BZ-06 3 64589985 64589985 T C ADAMTS9 Missense_Mutation p.H1166R 0.05 tolerated(0.42) benign(0.001) TCGA-D3-A3BZ-06 3 68802155 68802155 T C FAM19A4 Missense_Mutation p.K49E 0.08 tolerated(0.24) benign(0.262) TCGA-D3-A3BZ-06 4 156632186 156632186 T C GUCY1A3 Missense_Mutation p.F290S 0.05 deleterious(0) possibly_damaging(0.497) TCGA-D3-A3BZ-06 4 156710914 156710914 C T GUCY1B3 Missense_Mutation p.R116C 0.07 deleterious(0) possibly_damaging(0.883) TCGA-D3-A3BZ-06 4 40440107 40440107 C G RBM47 Missense_Mutation p.Q268H 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A3BZ-06 4 73280628 73280628 G A ADAMTS3 Nonsense_Mutation p.Q189* 0.10 TCGA-D3-A3BZ-06 5 137846839 137846839 C T ETF1 Missense_Mutation p.V305I 0.09 tolerated(0.44) benign(0.033) TCGA-D3-A3BZ-06 5 180377319 180377319 G C BTNL8 Missense_Mutation p.Q426H 0.14 tolerated(0.1) probably_damaging(0.979) TCGA-D3-A3BZ-06 5 36962278 36962278 A G NIPBL Missense_Mutation p.N171S 0.04 tolerated(0.11) benign(0.029) TCGA-D3-A3BZ-06 6 137219309 137219309 T A PEX7 Missense_Mutation p.L278H 0.07 deleterious(0.03) probably_damaging(0.928) TCGA-D3-A3BZ-06 6 29141880 29141880 C G OR2J2 Missense_Mutation p.I156M 0.07 deleterious(0) benign(0.183) TCGA-D3-A3BZ-06 6 32411551 32411551 C T HLA-DRA Missense_Mutation p.P210L 0.07 tolerated(0.11) benign(0.105) TCGA-D3-A3BZ-06 6 41652468 41652468 C T TFEB Missense_Mutation p.D434N 0.06 tolerated(0.22) probably_damaging(0.989) TCGA-D3-A3BZ-06 6 43152353 43152353 G A CUL9 Missense_Mutation p.R102Q 0.08 tolerated(0.44) benign(0.001) TCGA-D3-A3BZ-06 6 49754266 49754266 A C PGK2 Missense_Mutation p.L212R 0.06 deleterious(0) probably_damaging(0.999) TCGA-D3-A3BZ-06 7 100807585 100807585 C G VGF Silent p.T180T 0.05 TCGA-D3-A3BZ-06 7 135263592 135263592 G A NUP205 Missense_Mutation p.G324E 0.06 deleterious(0) probably_damaging(0.994) TCGA-D3-A3BZ-06 7 31793050 31793050 C G PDE1C Missense_Mutation p.R753T 0.04 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-D3-A3BZ-06 8 109796516 109796516 G C TMEM74 Missense_Mutation p.S271C 0.10 deleterious(0.01) possibly_damaging(0.854) TCGA-D3-A3BZ-06 8 131916183 131916183 G A ADCY8 Silent p.I582I 0.08 TCGA-D3-A3BZ-06 8 145153831 145153831 T A SHARPIN Missense_Mutation p.S372C 0.14 deleterious(0) probably_damaging(0.983) TCGA-D3-A3BZ-06 8 76465282 76465282 A C HNF4G Silent p.S155S 0.14 TCGA-D3-A3BZ-06 9 112705722 112705722 C T PALM2 3'UTR 0.08 TCGA-D3-A3BZ-06 9 134038526 134038526 T C NUP214 Missense_Mutation p.S897P 0.06 benign(0) TCGA-D3-A3BZ-06 9 140507428 140507428 T A ARRDC1 Missense_Mutation p.F67I 0.11 deleterious(0.02) benign(0.393) TCGA-D3-A3BZ-06 9 39140536 39140536 A T CNTNAP3 Missense_Mutation p.L619H 0.08 tolerated(0.26) possibly_damaging(0.873) TCGA-D3-A3BZ-06 9 78907175 78907175 G A PCSK5 Missense_Mutation p.A1057T 0.09 tolerated(0.64) benign(0.002) TCGA-D3-A3BZ-06 X 103041638 103041639 - TA PLP1 Frame_Shift_Ins p.G147* 0.21 TCGA-D3-A3BZ-06 X 47979536 47979536 C T SSX6 RNA 0.21 TCGA-D3-A3BZ-06 X 50094673 50094673 G C CCNB3 Missense_Mutation p.D1387H 0.14 deleterious_low_confidence(0.04) benign(0.215) TCGA-D3-A3C1-06 10 101117306 101117306 T G CNNM1 Missense_Mutation p.N537K 0.13 deleterious(0) probably_damaging(0.912) TCGA-D3-A3C1-06 10 55568842 55568842 C T PCDH15 Silent p.R590R 0.22 TCGA-D3-A3C1-06 10 69556939 69556939 G A DNAJC12 Missense_Mutation p.R178C 0.38 deleterious(0.01) possibly_damaging(0.816) TCGA-D3-A3C1-06 10 88230843 88230843 G A WAPAL Missense_Mutation p.T683I 0.56 deleterious(0) probably_damaging(0.914) TCGA-D3-A3C1-06 11 117299402 117299402 C T DSCAML1 Missense_Mutation p.R1995Q 0.23 deleterious_low_confidence(0.04) probably_damaging(0.939) TCGA-D3-A3C1-06 11 119216587 119216587 C T MFRP Missense_Mutation p.G108E 0.35 tolerated(1) benign(0) TCGA-D3-A3C1-06 11 120343836 120343836 G A ARHGEF12 Silent p.R1011R 0.17 TCGA-D3-A3C1-06 11 122726544 122726544 C T CRTAM Missense_Mutation p.P211L 0.19 deleterious(0.05) benign(0.092) TCGA-D3-A3C1-06 11 124294669 124294669 C T OR8B4 Silent p.G33G 0.34 TCGA-D3-A3C1-06 11 30938509 30938509 C T DCDC1 Silent p.Q1120Q 0.14 TCGA-D3-A3C1-06 11 43469611 43469611 C T TTC17 Missense_Mutation p.R909C 0.18 deleterious(0) probably_damaging(0.939) TCGA-D3-A3C1-06 11 47364686 47364686 C A MYBPC3 Nonsense_Mutation p.E413* 0.25 TCGA-D3-A3C1-06 11 55135990 55135990 C T OR4A15 Missense_Mutation p.P211S 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3C1-06 11 61495718 61495718 C T DAGLA Missense_Mutation p.R244W 0.31 deleterious(0.02) benign(0.4) TCGA-D3-A3C1-06 11 62984830 62984830 C G SLC22A25 Missense_Mutation p.Q262H 0.21 tolerated(0.09) possibly_damaging(0.651) TCGA-D3-A3C1-06 11 67250597 67250597 G A AIP 5'UTR 0.23 TCGA-D3-A3C1-06 11 73141787 73141787 G A FAM168A Silent p.A33A 0.29 TCGA-D3-A3C1-06 12 104089541 104089541 G A STAB2 Silent p.E1167E 0.27 TCGA-D3-A3C1-06 12 118533516 118533516 C T VSIG10 Silent p.S61S 0.25 TCGA-D3-A3C1-06 12 121768591 121768591 T C ANAPC5 Intron 0.17 TCGA-D3-A3C1-06 12 132682405 132682405 G A GALNT9 Missense_Mutation p.R167C 0.44 deleterious(0.01) possibly_damaging(0.719) TCGA-D3-A3C1-06 12 52864366 52864366 T C KRT6C Missense_Mutation p.N376D 0.18 tolerated(0.21) possibly_damaging(0.88) TCGA-D3-A3C1-06 12 53702545 53702545 G A AAAS Missense_Mutation p.P351S 0.49 tolerated(0.74) benign(0.015) TCGA-D3-A3C1-06 12 53702559 53702566 GTGAACAG ATAAACAA AAAS Missense_Mutation p.T346I 0.13 TCGA-D3-A3C1-06 12 53703003 53703003 G A AAAS Silent p.T291T 0.66 TCGA-D3-A3C1-06 12 53703020 53703020 G A AAAS Nonsense_Mutation p.R286* 0.66 TCGA-D3-A3C1-06 12 53703480 53703480 G A AAAS Silent p.L239L 0.45 TCGA-D3-A3C1-06 12 53817704 53817704 C T AMHR2 5'UTR 0.53 TCGA-D3-A3C1-06 12 53817709 53817709 C T AMHR2 5'UTR 0.51 TCGA-D3-A3C1-06 12 53817752 53817752 C T AMHR2 Missense_Mutation p.P12S 0.51 tolerated(0.19) possibly_damaging(0.641) TCGA-D3-A3C1-06 12 53818187 53818187 C T AMHR2 Silent p.C55C 0.60 TCGA-D3-A3C1-06 12 56120529 56120529 C T CD63 Silent p.P127P 0.48 TCGA-D3-A3C1-06 12 56120544 56120544 C T CD63 Silent p.Q122Q 0.49 TCGA-D3-A3C1-06 12 56120577 56120577 C T CD63 Silent p.V111V 0.54 TCGA-D3-A3C1-06 12 56120694 56120694 C T CD63 Missense_Mutation p.G104S 0.57 deleterious(0.03) probably_damaging(0.955) TCGA-D3-A3C1-06 12 56120713 56120713 C T CD63 Silent p.E97E 0.60 TCGA-D3-A3C1-06 12 56120975 56120975 C T CD63 Missense_Mutation p.C72Y 0.53 deleterious(0.01) probably_damaging(0.927) TCGA-D3-A3C1-06 12 56120979 56120979 C T CD63 Missense_Mutation p.G71S 0.52 deleterious(0.03) probably_damaging(1) TCGA-D3-A3C1-06 12 56121051 56121051 C T CD63 Missense_Mutation p.A47T 0.55 tolerated(0.62) benign(0.005) TCGA-D3-A3C1-06 12 56121119 56121119 C T CD63 Missense_Mutation p.C24Y 0.49 deleterious(0) possibly_damaging(0.595) TCGA-D3-A3C1-06 12 64813917 64813917 C A XPOT Nonsense_Mutation p.S186* 0.53 TCGA-D3-A3C1-06 12 64814155 64814155 C T XPOT Missense_Mutation p.H233Y 0.58 tolerated(1) benign(0.033) TCGA-D3-A3C1-06 12 64814263 64814263 C A XPOT Missense_Mutation p.Q269K 0.50 tolerated(0.96) benign(0.002) TCGA-D3-A3C1-06 12 64815126 64815126 C T XPOT Nonsense_Mutation p.Q319* 0.64 TCGA-D3-A3C1-06 12 64815234 64815234 C G XPOT Missense_Mutation p.L355V 0.64 tolerated(0.37) benign(0.008) TCGA-D3-A3C1-06 12 96360259 96360259 G A AMDHD1 Missense_Mutation p.G389E 0.58 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C1-06 13 28959130 28959130 G A FLT1 Missense_Mutation p.H670Y 0.16 tolerated(1) benign(0.01) TCGA-D3-A3C1-06 13 75900390 75900390 C T TBC1D4 Missense_Mutation p.G659E 0.14 tolerated(0.22) benign(0.06) TCGA-D3-A3C1-06 14 106090957 106090957 G A IGHG4 Silent p.S280S 0.13 TCGA-D3-A3C1-06 14 37717068 37717068 C T MIPOL1 5'UTR 0.21 TCGA-D3-A3C1-06 14 68282659 68282659 C T ZFYVE26 Missense_Mutation p.E8K 0.18 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C1-06 15 20643999 20643999 C T HERC2P3 RNA 0.12 TCGA-D3-A3C1-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.26 tolerated(0.3) benign(0.009) TCGA-D3-A3C1-06 15 90342541 90342541 G A ANPEP Silent p.I653I 0.14 TCGA-D3-A3C1-06 16 2474682 2474682 G A CCNF 5'Flank 0.21 TCGA-D3-A3C1-06 16 29847108 29847108 C T MVP Missense_Mutation p.L221F 0.26 deleterious(0) possibly_damaging(0.743) TCGA-D3-A3C1-06 16 72159913 72159913 C T PMFBP1 Missense_Mutation p.R736Q 0.20 tolerated(0.23) benign(0.025) TCGA-D3-A3C1-06 16 735547 735547 C T WDR24 Missense_Mutation p.E577K 0.27 deleterious(0.03) probably_damaging(0.964) TCGA-D3-A3C1-06 17 41168515 41168515 G A VAT1 Missense_Mutation p.R303W 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C1-06 17 46629400 46629400 G A HOXB3 Missense_Mutation p.S146F 0.24 deleterious(0.02) possibly_damaging(0.905) TCGA-D3-A3C1-06 18 28992864 28992864 G A DSG4 Missense_Mutation p.G829E 0.39 tolerated(0.13) probably_damaging(1) TCGA-D3-A3C1-06 18 34646905 34646905 C T KIAA1328 Missense_Mutation p.S210F 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 18 44013175 44013175 G A RNF165 Silent p.Q28Q 0.26 TCGA-D3-A3C1-06 18 55143790 55143790 C T ONECUT2 Silent p.R450R 0.16 TCGA-D3-A3C1-06 18 61261720 61261720 T A SERPINB13 Missense_Mutation p.W202R 0.24 tolerated(0.21) probably_damaging(1) TCGA-D3-A3C1-06 18 67742749 67742749 C G RTTN Missense_Mutation p.G1468A 0.17 deleterious(0) probably_damaging(0.987) TCGA-D3-A3C1-06 18 7013995 7013995 C T LAMA1 Missense_Mutation p.G1061D 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 19 11943616 11943616 C T ZNF440 Missense_Mutation p.P542L 0.19 deleterious(0.01) possibly_damaging(0.57) TCGA-D3-A3C1-06 19 18245446 18245446 C T MAST3 Silent p.I514I 0.18 TCGA-D3-A3C1-06 19 37676725 37676725 G A ZNF585B Missense_Mutation p.H572Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-D3-A3C1-06 19 42507520 42507520 G A GRIK5 Silent p.F826F 0.12 TCGA-D3-A3C1-06 19 44891738 44891738 A C ZNF285 Missense_Mutation p.N223K 0.20 tolerated(0.37) benign(0.002) TCGA-D3-A3C1-06 19 53572226 53572226 G A ZNF160 Missense_Mutation p.R521C 0.17 tolerated(0.23) probably_damaging(0.954) TCGA-D3-A3C1-06 19 54783715 54783715 A G LILRB2 Missense_Mutation p.Y96H 0.18 deleterious(0.03) probably_damaging(1) TCGA-D3-A3C1-06 19 55107662 55107662 C T LILRA1 Missense_Mutation p.R323C 0.18 deleterious(0.02) possibly_damaging(0.462) TCGA-D3-A3C1-06 19 5651068 5651068 C T SAFB Silent p.F426F 0.13 TCGA-D3-A3C1-06 19 6908765 6908765 G A EMR1 Silent p.T368T 0.32 TCGA-D3-A3C1-06 19 9070546 9070546 G T MUC16 Missense_Mutation p.L5634M 0.15 unknown(0) TCGA-D3-A3C1-06 1 144918965 144918965 T A PDE4DIP Silent p.L407L 0.15 TCGA-D3-A3C1-06 1 152280838 152280838 C T FLG Missense_Mutation p.G2175E 0.38 probably_damaging(0.931) TCGA-D3-A3C1-06 1 152281092 152281092 G A FLG Silent p.F2090F 0.19 TCGA-D3-A3C1-06 1 152325251 152325251 C T FLG2 Missense_Mutation p.G1671R 0.18 probably_damaging(0.979) TCGA-D3-A3C1-06 1 181741229 181741229 G A CACNA1E Silent p.E1667E 0.22 TCGA-D3-A3C1-06 1 196716257 196716257 C T CFH Silent p.S1170S 0.11 TCGA-D3-A3C1-06 1 202172928 202172928 G A LGR6 Intron 0.16 TCGA-D3-A3C1-06 1 207647635 207647635 G T CR2 Nonsense_Mutation p.G764* 0.19 TCGA-D3-A3C1-06 1 21155695 21155695 C T EIF4G3 Missense_Mutation p.E1328K 0.17 deleterious(0) probably_damaging(0.982) TCGA-D3-A3C1-06 1 215847712 215847712 C T USH2A Missense_Mutation p.S4514N 0.19 benign(0.259) TCGA-D3-A3C1-06 1 22211071 22211071 C T HSPG2 Missense_Mutation p.R535H 0.29 probably_damaging(0.995) TCGA-D3-A3C1-06 1 224418997 224418997 A C NVL Silent p.G819G 0.16 TCGA-D3-A3C1-06 1 247065863 247065863 G A AHCTF1 Nonsense_Mutation p.R370* 0.19 TCGA-D3-A3C1-06 1 247836239 247836239 A G OR13G1 Silent p.A35A 0.07 TCGA-D3-A3C1-06 1 247902398 247902398 C T OR14K1 Missense_Mutation p.T161I 0.15 deleterious(0.02) benign(0.268) TCGA-D3-A3C1-06 1 248004723 248004723 G A OR11L1 Missense_Mutation p.P159L 0.17 tolerated(0.41) probably_damaging(0.992) TCGA-D3-A3C1-06 1 248263456 248263456 G C OR2L13 Missense_Mutation p.R260P 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A3C1-06 1 43900148 43900148 G A SZT2 Missense_Mutation p.V1909I 0.08 deleterious(0) probably_damaging(0.957) TCGA-D3-A3C1-06 1 75693533 75693533 T C SLC44A5 Missense_Mutation p.H288R 0.19 deleterious(0.03) benign(0.001) TCGA-D3-A3C1-06 20 18131467 18131467 C A CSRP2BP Silent p.V127V 0.26 TCGA-D3-A3C1-06 20 23584132 23584132 C A CST9 3'UTR 0.31 TCGA-D3-A3C1-06 20 41306658 41306658 C T PTPRT Nonsense_Mutation p.W334* 0.28 TCGA-D3-A3C1-06 20 42789020 42789020 C T JPH2 Missense_Mutation p.G136D 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 20 47641991 47641991 G A ARFGEF2 Missense_Mutation p.E1633K 0.17 tolerated(0.06) benign(0.354) TCGA-D3-A3C1-06 20 62577061 62577061 A C UCKL1 Silent p.G199G 0.19 TCGA-D3-A3C1-06 21 15599592 15599593 - T RBM11 Frame_Shift_Ins p.K276* 0.17 TCGA-D3-A3C1-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 21 41711284 41711284 C T DSCAM Silent p.P423P 0.34 TCGA-D3-A3C1-06 21 44592347 44592347 C T CRYAA Missense_Mutation p.P160L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 21 45709622 45709622 G A AIRE Silent p.K245K 0.17 TCGA-D3-A3C1-06 22 19808195 19808195 A T GNB1L Silent p.V60V 0.21 TCGA-D3-A3C1-06 22 37407035 37407035 G A TST 3'UTR 0.17 TCGA-D3-A3C1-06 22 38461089 38461089 C T PICK1 Silent p.I78I 0.22 TCGA-D3-A3C1-06 22 39530023 39530023 G A CBX7 Missense_Mutation p.P210L 0.17 deleterious(0.03) benign(0.255) TCGA-D3-A3C1-06 22 45258305 45258305 G A PRR5-ARHGAP8 Missense_Mutation p.E588K 0.10 tolerated_low_confidence(0.29) benign(0.003) TCGA-D3-A3C1-06 2 102968079 102968079 G A IL1RL1 Missense_Mutation p.E457K 0.09 deleterious(0.04) probably_damaging(0.968) TCGA-D3-A3C1-06 2 120383201 120383201 C T PCDP1 Missense_Mutation p.R485C 0.29 deleterious(0) probably_damaging(0.944) TCGA-D3-A3C1-06 2 121107115 121107115 G A INHBB Missense_Mutation p.D297N 0.14 tolerated(0.08) probably_damaging(0.989) TCGA-D3-A3C1-06 2 145161624 145161624 G A ZEB2 Silent p.R222R 0.20 TCGA-D3-A3C1-06 2 149227601 149227601 C T MBD5 Missense_Mutation p.P697S 0.40 deleterious(0.01) possibly_damaging(0.803) TCGA-D3-A3C1-06 2 152127301 152127301 T - NMI Frame_Shift_Del p.N277Tfs*14 0.20 TCGA-D3-A3C1-06 2 165578763 165578763 G A COBLL1 Missense_Mutation p.S273F 0.19 deleterious(0) possibly_damaging(0.883) TCGA-D3-A3C1-06 2 165954028 165954028 C T SCN3A Missense_Mutation p.V1325M 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C1-06 2 168100621 168100621 G AA XIRP2 Frame_Shift_Ins p.G907Kfs*4 0.17 TCGA-D3-A3C1-06 2 179296927 179296927 G A PRKRA Missense_Mutation p.P280L 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C1-06 2 182423332 182423332 G A CERKL Missense_Mutation p.P287S 0.15 deleterious(0.02) probably_damaging(0.955) TCGA-D3-A3C1-06 2 196749359 196749359 C T DNAH7 Missense_Mutation p.V1905I 0.10 tolerated(0.32) benign(0.206) TCGA-D3-A3C1-06 2 209302496 209302496 C T PTH2R Nonsense_Mutation p.R101* 0.08 TCGA-D3-A3C1-06 2 216239985 216239985 C T FN1 Missense_Mutation p.E2037K 0.13 tolerated(0.16) probably_damaging(0.996) TCGA-D3-A3C1-06 2 234237135 234237135 G A SAG Missense_Mutation p.R175Q 0.37 tolerated(0.05) possibly_damaging(0.747) TCGA-D3-A3C1-06 2 234681041 234681041 G A UGT1A4 Missense_Mutation p.D481N 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3C1-06 2 29296513 29296513 G A C2orf71 Silent p.I205I 0.17 TCGA-D3-A3C1-06 2 33783890 33783890 C T RASGRP3 Silent p.V619V 0.16 TCGA-D3-A3C1-06 2 71766327 71766327 C T DYSF Silent p.L512L 0.18 TCGA-D3-A3C1-06 2 85533394 85533394 C T TCF7L1 Missense_Mutation p.A352V 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C1-06 3 108183645 108183645 G A MYH15 Missense_Mutation p.S544F 0.16 deleterious(0.02) benign(0.378) TCGA-D3-A3C1-06 3 111564751 111564751 G C PLCXD2 3'UTR 0.17 TCGA-D3-A3C1-06 3 125279285 125279285 C T OSBPL11 Missense_Mutation p.E365K 0.15 deleterious(0.01) possibly_damaging(0.713) TCGA-D3-A3C1-06 3 127379473 127379473 C T PODXL2 Missense_Mutation p.P201L 0.26 tolerated(0.12) benign(0.013) TCGA-D3-A3C1-06 3 128889288 128889288 G A CNBP 3'UTR 0.15 TCGA-D3-A3C1-06 3 129195589 129195589 C T IFT122 Silent p.A415A 0.40 TCGA-D3-A3C1-06 3 133099274 133099274 C T TMEM108 Missense_Mutation p.P240L 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-D3-A3C1-06 3 1427434 1427434 G T CNTN6 Missense_Mutation p.G886V 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A3C1-06 3 14513784 14513784 C T SLC6A6 Missense_Mutation p.L390F 0.31 tolerated(0.16) probably_damaging(1) TCGA-D3-A3C1-06 3 186459368 186459368 G A KNG1 Missense_Mutation p.E395K 0.17 tolerated(0.45) benign(0.013) TCGA-D3-A3C1-06 3 2944657 2944657 T G CNTN4 Missense_Mutation p.V392G 0.08 tolerated(0.3) benign(0.245) TCGA-D3-A3C1-06 3 36893670 36893670 C T TRANK1 Silent p.R1528R 0.22 TCGA-D3-A3C1-06 3 38927621 38927621 G A SCN11A Nonsense_Mutation p.R982* 0.29 TCGA-D3-A3C1-06 3 45812881 45812881 C T SLC6A20 Missense_Mutation p.G255S 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C1-06 3 50220647 50220647 C T SEMA3F Silent p.D349D 0.11 TCGA-D3-A3C1-06 3 51937003 51937003 C T IQCF1 Missense_Mutation p.E36K 0.34 tolerated(0.25) benign(0.021) TCGA-D3-A3C1-06 3 67058642 67058642 G A KBTBD8 Missense_Mutation p.E547K 0.15 tolerated(0.65) possibly_damaging(0.728) TCGA-D3-A3C1-06 3 73114872 73114872 A T PPP4R2 Nonstop_Mutation p.*418Lext*6 0.33 TCGA-D3-A3C1-06 3 73114873 73114873 A T PPP4R2 Nonstop_Mutation p.*418Yext*6 0.38 TCGA-D3-A3C1-06 3 93615438 93615438 C T PROS1 Missense_Mutation p.R316H 0.14 tolerated(0.06) benign(0.014) TCGA-D3-A3C1-06 4 101109106 101109106 G A DDIT4L Nonsense_Mutation p.R104* 0.21 TCGA-D3-A3C1-06 4 166978335 166978335 G A TLL1 Splice_Site p.X574_splice 0.17 TCGA-D3-A3C1-06 4 170610305 170610305 A T CLCN3 Missense_Mutation p.N177I 0.35 deleterious(0) possibly_damaging(0.629) TCGA-D3-A3C1-06 4 20599919 20599919 T G SLIT2 Missense_Mutation p.L1198R 0.17 deleterious(0) possibly_damaging(0.661) TCGA-D3-A3C1-06 4 42505494 42505494 C T ATP8A1 Missense_Mutation p.M708I 0.19 tolerated(0.12) benign(0.014) TCGA-D3-A3C1-06 4 517460 517460 C T PIGG Silent p.L609L 0.18 TCGA-D3-A3C1-06 4 55976877 55976877 C T KDR Silent p.G345G 0.19 TCGA-D3-A3C1-06 4 57180998 57180998 C T KIAA1211 Missense_Mutation p.H444Y 0.21 tolerated(0.29) unknown(0) TCGA-D3-A3C1-06 4 8469883 8469883 C T TRMT44 Silent p.P579P 0.24 TCGA-D3-A3C1-06 5 10973741 10973741 C T CTNND2 Missense_Mutation p.D1168N 0.19 deleterious(0.01) benign(0.261) TCGA-D3-A3C1-06 5 110835568 110835568 G A STARD4 3'UTR 0.18 TCGA-D3-A3C1-06 5 11098696 11098696 C T CTNND2 Silent p.G876G 0.18 TCGA-D3-A3C1-06 5 128365337 128365337 A T SLC27A6 Missense_Mutation p.K540N 0.29 tolerated(0.06) benign(0.258) TCGA-D3-A3C1-06 5 140562427 140562427 C T PCDHB16 Missense_Mutation p.P98L 0.64 tolerated_low_confidence(0.28) benign(0.021) TCGA-D3-A3C1-06 5 140865783 140865783 C G PCDHGC4 Missense_Mutation p.P348R 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A3C1-06 5 169484667 169484667 G A DOCK2 Silent p.S1488S 0.51 TCGA-D3-A3C1-06 5 170139862 170139862 C T KCNIP1 Silent p.I22I 0.13 TCGA-D3-A3C1-06 5 178310275 178310275 A T ZNF354B Missense_Mutation p.E274D 0.27 tolerated(0.09) benign(0.019) TCGA-D3-A3C1-06 5 179321569 179321569 C T TBC1D9B Missense_Mutation p.E132K 0.13 deleterious(0) benign(0.326) TCGA-D3-A3C1-06 5 34937654 34937654 G A DNAJC21 Missense_Mutation p.R221Q 0.21 deleterious(0.02) benign(0.179) TCGA-D3-A3C1-06 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.21 tolerated(0.36) benign(0.004) TCGA-D3-A3C1-06 5 56778121 56778121 C T ACTBL2 Silent p.Q138Q 0.55 TCGA-D3-A3C1-06 6 144095218 144095218 C T PHACTR2 Silent p.R485R 0.29 TCGA-D3-A3C1-06 6 158353276 158353276 C T SNX9 Silent p.A446A 0.25 TCGA-D3-A3C1-06 6 49928114 49928114 C T DEFB114 Missense_Mutation p.G34D 0.24 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-D3-A3C1-06 6 7568801 7568801 C T DSP Silent p.L466L 0.26 TCGA-D3-A3C1-06 6 85448233 85448233 G A TBX18 Missense_Mutation p.P361S 0.19 tolerated(0.37) probably_damaging(0.994) TCGA-D3-A3C1-06 7 122342533 122342542 TTGGTCAAAG - RNF148 Frame_Shift_Del p.P88Lfs*37 0.21 TCGA-D3-A3C1-06 7 135080388 135080388 G A CNOT4 Missense_Mutation p.S376L 0.15 deleterious(0) possibly_damaging(0.465) TCGA-D3-A3C1-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.79 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C1-06 7 142032491 142032491 G A TRBV7-1 Missense_Mutation p.G104E 0.19 tolerated(0.39) benign(0.03) TCGA-D3-A3C1-06 7 150217172 150217172 G A GIMAP7 Missense_Mutation p.R37K 0.71 tolerated(1) benign(0.009) TCGA-D3-A3C1-06 7 150674991 150674991 C T KCNH2 Missense_Mutation p.R4Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C1-06 7 2649873 2649873 C T IQCE 3'UTR 0.22 TCGA-D3-A3C1-06 7 53103646 53103646 C T POM121L12 Silent p.S94S 0.18 TCGA-D3-A3C1-06 7 73246112 73246112 C T CLDN4 Missense_Mutation p.S194F 0.22 deleterious(0.02) possibly_damaging(0.871) TCGA-D3-A3C1-06 7 82387678 82387678 C T PCLO 3'UTR 0.25 TCGA-D3-A3C1-06 7 82580214 82580214 G A PCLO Silent p.R3230R 0.07 TCGA-D3-A3C1-06 7 97363116 97363116 G C TAC1 Missense_Mutation p.G69R 0.12 deleterious(0.03) probably_damaging(1) TCGA-D3-A3C1-06 7 97365643 97365643 G A TAC1 Missense_Mutation p.G108S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3C1-06 8 108264220 108264220 G A ANGPT1 Missense_Mutation p.P454S 0.18 deleterious(0.02) possibly_damaging(0.776) TCGA-D3-A3C1-06 8 113933877 113933877 C T CSMD3 Missense_Mutation p.D538N 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A3C1-06 8 24207459 24207459 C A ADAM28 Silent p.S691S 0.17 TCGA-D3-A3C1-06 8 3611459 3611459 C T CSMD1 Silent p.Q308Q 0.14 TCGA-D3-A3C1-06 8 40554899 40554899 C T ZMAT4 Missense_Mutation p.D72N 0.10 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A3C1-06 8 92052894 92052894 G A TMEM55A Silent p.Y28Y 0.17 TCGA-D3-A3C1-06 9 130187080 130187080 G A ZNF79 Missense_Mutation p.G5E 0.53 tolerated(0.43) probably_damaging(0.998) TCGA-D3-A3C1-06 9 27206637 27206637 A G TEK Missense_Mutation p.K808E 0.26 deleterious(0) possibly_damaging(0.562) TCGA-D3-A3C1-06 X 135427472 135427472 C T GPR112 Missense_Mutation p.S536F 0.30 tolerated(0.17) benign(0.03) TCGA-D3-A3C1-06 X 65423391 65423391 G A HEPH Missense_Mutation p.E809K 0.65 tolerated(0.12) benign(0.271) TCGA-D3-A3C1-06 X 8433472 8433472 G A VCX3B 5'UTR 0.16 TCGA-D3-A3C3-06 10 113913301 113913301 A T GPAM 3'UTR 0.57 TCGA-D3-A3C3-06 10 115536989 115536989 C A PLEKHS1 Missense_Mutation p.L380M 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3C3-06 10 116049010 116049010 C T VWA2 Silent p.A628A 0.59 TCGA-D3-A3C3-06 10 118969366 118969366 G A KCNK18 Silent p.Q237Q 0.50 TCGA-D3-A3C3-06 10 20453447 20453447 C T PLXDC2 Silent p.V278V 0.52 TCGA-D3-A3C3-06 10 43088258 43088258 C T ZNF33B Missense_Mutation p.A714T 0.54 tolerated(0.35) benign(0.219) TCGA-D3-A3C3-06 10 64136385 64136385 G A ZNF365 Missense_Mutation p.G145S 0.59 tolerated_low_confidence(0.73) benign(0.013) TCGA-D3-A3C3-06 10 95111307 95111307 G A MYOF Nonsense_Mutation p.R1229* 0.07 TCGA-D3-A3C3-06 11 105774666 105774666 C T GRIA4 Missense_Mutation p.P338S 0.45 deleterious(0.01) possibly_damaging(0.878) TCGA-D3-A3C3-06 11 107663317 107663317 G A SLC35F2 3'UTR 0.40 TCGA-D3-A3C3-06 11 118362000 118362000 C T KMT2A Missense_Mutation p.H1596Y 0.26 probably_damaging(0.996) TCGA-D3-A3C3-06 11 121485591 121485591 A G SORL1 Missense_Mutation p.T1811A 0.26 tolerated(0.26) probably_damaging(0.997) TCGA-D3-A3C3-06 11 123886915 123886915 C T OR10G4 Silent p.L212L 0.12 TCGA-D3-A3C3-06 11 123989325 123989325 C G VWA5A Silent p.T185T 0.12 TCGA-D3-A3C3-06 11 14284295 14284295 G A RP11-21L19.1 3'Flank 0.35 TCGA-D3-A3C3-06 11 15247312 15247312 C T INSC Missense_Mutation p.R417C 0.20 deleterious(0.02) possibly_damaging(0.529) TCGA-D3-A3C3-06 11 20177834 20177834 C T DBX1 Missense_Mutation p.G359R 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3C3-06 11 22707235 22707235 C G GAS2 Missense_Mutation p.T56S 0.32 tolerated(0.78) benign(0.009) TCGA-D3-A3C3-06 11 3381179 3381179 G A ZNF195 Silent p.P353P 0.33 TCGA-D3-A3C3-06 11 46801774 46801774 G A CKAP5 Silent p.L801L 0.39 TCGA-D3-A3C3-06 11 5322610 5322610 G A OR51B4 Silent p.I189I 0.34 TCGA-D3-A3C3-06 11 55321940 55321940 G A OR4C15 Missense_Mutation p.G53E 0.26 tolerated_low_confidence(1) benign(0) TCGA-D3-A3C3-06 11 55541346 55541346 C T OR5D13 Missense_Mutation p.L145F 0.29 tolerated(0.1) benign(0.168) TCGA-D3-A3C3-06 11 56058493 56058493 C T OR8H1 Missense_Mutation p.G16R 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C3-06 11 56380097 56380097 G C OR5M1 Missense_Mutation p.N294K 0.12 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C3-06 11 57450009 57450009 C T ZDHHC5 Missense_Mutation p.P74S 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 11 58125658 58125658 C T OR5B17 Silent p.V295V 0.43 TCGA-D3-A3C3-06 11 58274899 58274899 G A OR5B21 Missense_Mutation p.S227F 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3C3-06 11 59224654 59224654 C T OR4D6 Missense_Mutation p.S74L 0.34 deleterious(0) benign(0.193) TCGA-D3-A3C3-06 11 59244987 59244987 C T OR4D10 Missense_Mutation p.L29F 0.41 tolerated(0.17) benign(0.005) TCGA-D3-A3C3-06 11 62384138 62384138 G A B3GAT3 Missense_Mutation p.P250L 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C3-06 11 64338599 64338599 G A SLC22A11 3'UTR 0.29 TCGA-D3-A3C3-06 11 78282420 78282420 C T NARS2 Missense_Mutation p.E71K 0.38 tolerated(0.87) benign(0.085) TCGA-D3-A3C3-06 11 8111659 8111659 C T TUB Missense_Mutation p.P100L 0.54 deleterious(0.04) probably_damaging(0.974) TCGA-D3-A3C3-06 11 94231258 94231258 C T ANKRD49 Missense_Mutation p.L94F 0.47 deleterious(0) probably_damaging(0.987) TCGA-D3-A3C3-06 12 110246249 110246249 G A TRPV4 Silent p.A137A 0.65 TCGA-D3-A3C3-06 12 112219760 112219760 G A ALDH2 Silent p.R51R 0.58 TCGA-D3-A3C3-06 12 12300476 12300476 G A LRP6 Missense_Mutation p.T1074I 0.22 deleterious(0) probably_damaging(0.985) TCGA-D3-A3C3-06 12 124411202 124411202 G A DNAH10 Missense_Mutation p.M3862I 0.58 benign(0.002) TCGA-D3-A3C3-06 12 39967592 39967592 G A ABCD2 Silent p.V643V 0.65 TCGA-D3-A3C3-06 12 52913597 52913597 G A KRT5 Nonsense_Mutation p.Q162* 0.62 TCGA-D3-A3C3-06 12 6232045 6232045 C T VWF Intron 0.65 TCGA-D3-A3C3-06 13 100207827 100207827 C T TM9SF2 Silent p.L560L 0.36 TCGA-D3-A3C3-06 13 113803759 113803759 C T F10 Silent p.S465S 0.24 TCGA-D3-A3C3-06 13 19751421 19751421 G A TUBA3C Silent p.I234I 0.30 TCGA-D3-A3C3-06 13 77844529 77844529 C T MYCBP2 Missense_Mutation p.D326N 0.13 possibly_damaging(0.906) TCGA-D3-A3C3-06 14 24530818 24530818 C T LRRC16B Missense_Mutation p.P806L 0.23 deleterious(0) probably_damaging(0.971) TCGA-D3-A3C3-06 14 25043691 25043691 G A CTSG Silent p.V118V 0.18 TCGA-D3-A3C3-06 14 31169460 31169460 C T SCFD1 Missense_Mutation p.S469F 0.19 deleterious(0.02) possibly_damaging(0.751) TCGA-D3-A3C3-06 14 73727416 73727416 G A PAPLN Splice_Site p.X635_splice 0.35 TCGA-D3-A3C3-06 14 77861085 77861085 G A NOXRED1 Silent p.L323L 0.52 TCGA-D3-A3C3-06 14 79933605 79933605 C T NRXN3 Missense_Mutation p.L729F 0.18 tolerated(0.09) possibly_damaging(0.512) TCGA-D3-A3C3-06 14 92266635 92266635 C T TC2N Missense_Mutation p.R184Q 0.30 tolerated(0.08) benign(0.006) TCGA-D3-A3C3-06 15 100533320 100533320 G A ADAMTS17 Missense_Mutation p.P961L 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 15 23931457 23931457 G A NDN Missense_Mutation p.A303V 0.38 tolerated(0.1) benign(0.027) TCGA-D3-A3C3-06 15 25430786 25430786 G A SNORD115-9 RNA 0.38 TCGA-D3-A3C3-06 15 32926163 32926163 C T ARHGAP11A Missense_Mutation p.S422F 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C3-06 15 39544531 39544531 C T C15orf54 Silent p.F65F 0.26 TCGA-D3-A3C3-06 15 40259915 40259915 G A EIF2AK4 Missense_Mutation p.R463Q 0.30 tolerated(0.17) possibly_damaging(0.503) TCGA-D3-A3C3-06 15 49775436 49775436 A G FGF7 Silent p.G125G 0.21 TCGA-D3-A3C3-06 15 74337358 74337358 G A PML 3'UTR 0.49 TCGA-D3-A3C3-06 15 84651807 84651807 G A ADAMTSL3 Missense_Mutation p.E1143K 0.27 tolerated(0.38) benign(0.007) TCGA-D3-A3C3-06 15 89015874 89015874 C T MRPS11 Missense_Mutation p.P67S 0.19 deleterious(0.02) possibly_damaging(0.821) TCGA-D3-A3C3-06 15 91298167 91298167 C T BLM Silent p.D362D 0.16 TCGA-D3-A3C3-06 15 93521462 93521462 A G CHD2 Splice_Site p.X860_splice 0.40 TCGA-D3-A3C3-06 15 94841468 94841468 A T MCTP2 5'Flank 0.20 TCGA-D3-A3C3-06 16 10997624 10997624 G A CIITA Missense_Mutation p.S270N 0.49 tolerated(0.06) benign(0.423) TCGA-D3-A3C3-06 16 12662371 12662371 C T SNX29 Missense_Mutation p.T776I 0.18 tolerated(0.39) benign(0.019) TCGA-D3-A3C3-06 16 15125745 15125745 C G PDXDC1 Missense_Mutation p.S518C 0.29 deleterious(0.01) benign(0.016) TCGA-D3-A3C3-06 16 20376827 20376827 C T PDILT Nonsense_Mutation p.W384* 0.22 TCGA-D3-A3C3-06 16 21042506 21042506 C T DNAH3 Nonsense_Mutation p.W1767* 0.44 TCGA-D3-A3C3-06 16 29859194 29859194 C T MVP Nonsense_Mutation p.Q856* 0.12 TCGA-D3-A3C3-06 16 3065515 3065515 C T CLDN6 Missense_Mutation p.A170T 0.57 tolerated(0.13) possibly_damaging(0.596) TCGA-D3-A3C3-06 16 31498708 31498708 C T SLC5A2 Silent p.I214I 0.34 TCGA-D3-A3C3-06 16 33020717 33020717 C T IGHV3OR16-8 Missense_Mutation p.P42L 0.47 deleterious_low_confidence(0.04) benign(0) TCGA-D3-A3C3-06 16 3306468 3306468 G A MEFV Silent p.I40I 0.42 TCGA-D3-A3C3-06 16 48138243 48138243 G A ABCC12 Missense_Mutation p.P904S 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C3-06 16 73127399 73127399 G A HCCAT5 RNA 0.31 TCGA-D3-A3C3-06 16 74387714 74387714 G A RP11-252A24.2 RNA 0.11 TCGA-D3-A3C3-06 16 74387715 74387715 T A RP11-252A24.2 RNA 0.11 TCGA-D3-A3C3-06 16 82101883 82101883 G A HSD17B2 Missense_Mutation p.R125Q 0.48 tolerated(0.09) possibly_damaging(0.627) TCGA-D3-A3C3-06 16 85100908 85100908 C T KIAA0513 Silent p.S77S 0.17 TCGA-D3-A3C3-06 17 12883398 12883398 C G ARHGAP44 Missense_Mutation p.S596C 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3C3-06 17 18137691 18137691 G A LLGL1 Silent p.T273T 0.17 TCGA-D3-A3C3-06 17 18178138 18178138 G A TOP3A Missense_Mutation p.P995L 0.29 tolerated(0.28) benign(0.017) TCGA-D3-A3C3-06 17 27188633 27188633 C T ERAL1 3'Flank 0.22 TCGA-D3-A3C3-06 17 31355372 31355372 G A ASIC2 Silent p.S342S 0.37 TCGA-D3-A3C3-06 17 3324755 3324755 C T OR3A3 Silent p.I298I 0.33 TCGA-D3-A3C3-06 17 39578686 39578686 C T KRT37 Missense_Mutation p.E245K 0.35 deleterious(0) possibly_damaging(0.53) TCGA-D3-A3C3-06 17 40817713 40817713 G C TUBG2 Silent p.S237S 0.42 TCGA-D3-A3C3-06 17 40956324 40956324 G A CNTD1 Nonsense_Mutation p.W109* 0.36 TCGA-D3-A3C3-06 17 42457127 42457127 G A ITGA2B Missense_Mutation p.S603F 0.41 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C3-06 17 46030598 46030598 C T PRR15L Translation_Start_Site p.M1? 0.38 tolerated_low_confidence(0.29) benign(0) TCGA-D3-A3C3-06 17 46867331 46867331 C T TTLL6 Silent p.R454R 0.37 TCGA-D3-A3C3-06 17 47904851 47904851 C T KAT7 Missense_Mutation p.P608L 0.29 deleterious_low_confidence(0) possibly_damaging(0.659) TCGA-D3-A3C3-06 17 56787223 56787223 C T RAD51C Nonsense_Mutation p.R237* 0.27 TCGA-D3-A3C3-06 17 61498424 61498424 A T TANC2 Missense_Mutation p.K1694I 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.564) TCGA-D3-A3C3-06 17 72920943 72920943 G A OTOP2 Silent p.L72L 0.30 TCGA-D3-A3C3-06 17 73489115 73489115 C T KIAA0195 Missense_Mutation p.S673F 0.40 deleterious(0.02) possibly_damaging(0.62) TCGA-D3-A3C3-06 17 74387350 74387350 G A UBE2O Missense_Mutation p.P1185S 0.30 tolerated_low_confidence(0.5) benign(0.002) TCGA-D3-A3C3-06 17 7554890 7554890 G A ATP1B2 Silent p.K18K 0.50 TCGA-D3-A3C3-06 17 77040134 77040134 C T C1QTNF1 Silent p.P28P 0.38 TCGA-D3-A3C3-06 17 78444591 78444591 G A NPTX1 3'UTR 0.34 TCGA-D3-A3C3-06 17 8049412 8049412 C T PER1 Silent p.R694R 0.24 TCGA-D3-A3C3-06 17 9783717 9783717 C T GLP2R Missense_Mutation p.L390F 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 18 34359566 34359566 G T FHOD3 3'UTR 0.17 TCGA-D3-A3C3-06 18 39623705 39623705 T C PIK3C3 Silent p.F704F 0.20 TCGA-D3-A3C3-06 18 44560359 44560359 G A TCEB3B Missense_Mutation p.S426L 0.17 tolerated(0.18) possibly_damaging(0.887) TCGA-D3-A3C3-06 18 61390752 61390752 C T SERPINB11 3'UTR 0.47 TCGA-D3-A3C3-06 18 61459658 61459658 G A SERPINB7 Missense_Mutation p.G67E 0.14 tolerated(0.47) possibly_damaging(0.756) TCGA-D3-A3C3-06 19 10747042 10747042 G A SLC44A2 Missense_Mutation p.R426H 0.38 tolerated(0.19) benign(0.004) TCGA-D3-A3C3-06 19 1230886 1230886 C T C19orf26 3'UTR 0.20 TCGA-D3-A3C3-06 19 15586668 15586668 G A PGLYRP2 Silent p.A271A 0.13 TCGA-D3-A3C3-06 19 17476249 17476249 C T PLVAP Missense_Mutation p.R342Q 0.21 tolerated(0.1) benign(0.221) TCGA-D3-A3C3-06 19 19135734 19135734 G A SUGP2 Missense_Mutation p.L475F 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3C3-06 19 22000695 22000695 G A ZNF43 Missense_Mutation p.P75L 0.23 tolerated(0.26) benign(0.01) TCGA-D3-A3C3-06 19 22000696 22000696 G A ZNF43 Missense_Mutation p.P75S 0.23 tolerated(0.18) benign(0.001) TCGA-D3-A3C3-06 19 31039854 31039854 G A ZNF536 Missense_Mutation p.D1110N 0.42 deleterious_low_confidence(0) benign(0.008) TCGA-D3-A3C3-06 19 35510325 35510325 G A GRAMD1A Missense_Mutation p.G455R 0.20 tolerated(0.06) benign(0.031) TCGA-D3-A3C3-06 19 38103185 38103185 C T ZNF540 Missense_Mutation p.A335V 0.43 deleterious(0.01) possibly_damaging(0.666) TCGA-D3-A3C3-06 19 42213788 42213788 G A CEA Missense_Mutation p.G85E 0.34 tolerated(0.15) benign(0.034) TCGA-D3-A3C3-06 19 43031363 43031363 C T CEACAM1 Missense_Mutation p.G85E 0.10 tolerated(0.41) benign(0.006) TCGA-D3-A3C3-06 19 45855574 45855574 G A ERCC2 Missense_Mutation p.R695C 0.33 deleterious(0) probably_damaging(0.954) TCGA-D3-A3C3-06 19 48833692 48833692 G A EMP3 Missense_Mutation p.G153S 0.47 tolerated(0.08) probably_damaging(1) TCGA-D3-A3C3-06 19 49657367 49657367 C T HRC Silent p.E376E 0.11 TCGA-D3-A3C3-06 19 50549410 50549410 C T ZNF473 Silent p.T570T 0.15 TCGA-D3-A3C3-06 19 53014785 53014785 C T ZNF578 Missense_Mutation p.S384L 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-D3-A3C3-06 19 53116513 53116513 C T ZNF83 Silent p.G435G 0.22 TCGA-D3-A3C3-06 19 53572054 53572054 G A ZNF160 Missense_Mutation p.S578L 0.40 deleterious(0.04) possibly_damaging(0.879) TCGA-D3-A3C3-06 19 54803141 54803141 C G LILRA3 Missense_Mutation p.R179P 0.62 deleterious(0) benign(0.408) TCGA-D3-A3C3-06 19 57724217 57724217 C T ZNF264 Silent p.T584T 0.47 TCGA-D3-A3C3-06 19 58598304 58598304 G C ZSCAN18 Missense_Mutation p.N294K 0.09 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C3-06 19 7593136 7593136 C T MCOLN1 Silent p.F290F 0.42 TCGA-D3-A3C3-06 19 9013898 9013898 G A MUC16 Missense_Mutation p.S12831F 0.25 probably_damaging(0.973) TCGA-D3-A3C3-06 19 9063802 9063802 C T MUC16 Missense_Mutation p.D7882N 0.17 unknown(0) TCGA-D3-A3C3-06 1 1221451 1221451 G A SCNN1D Missense_Mutation p.G235D 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 1 154698427 154698427 G A KCNN3 Missense_Mutation p.H556Y 0.53 deleterious(0) possibly_damaging(0.536) TCGA-D3-A3C3-06 1 156303399 156303399 G A CCT3 Silent p.I81I 0.23 TCGA-D3-A3C3-06 1 157745580 157745580 C T FCRL2 Missense_Mutation p.V13I 0.33 tolerated_low_confidence(0.19) benign(0.007) TCGA-D3-A3C3-06 1 159410425 159410425 C T OR10J1 Missense_Mutation p.P293S 0.18 deleterious(0.04) probably_damaging(1) TCGA-D3-A3C3-06 1 161019438 161019438 C T ARHGAP30 Missense_Mutation p.D488N 0.18 tolerated(0.06) benign(0.013) TCGA-D3-A3C3-06 1 171178096 171178096 C T FMO2 3'UTR 0.18 TCGA-D3-A3C3-06 1 17256819 17256819 C T CROCC Silent p.I220I 0.27 TCGA-D3-A3C3-06 1 17256820 17256820 C T CROCC Missense_Mutation p.R221W 0.25 benign(0.201) TCGA-D3-A3C3-06 1 17657557 17657557 C T PADI4 Silent p.S62S 0.47 TCGA-D3-A3C3-06 1 177242650 177242650 G T BRINP2 Silent p.L232L 0.30 TCGA-D3-A3C3-06 1 200089940 200089940 A G NR5A2 Missense_Mutation p.D412G 0.37 deleterious(0.02) benign(0.003) TCGA-D3-A3C3-06 1 202288196 202288196 G A LGR6 Missense_Mutation p.G922E 0.44 tolerated_low_confidence(0.06) benign(0.282) TCGA-D3-A3C3-06 1 222902985 222902986 TT - BROX Frame_Shift_Del p.L261Ifs*3 0.28 TCGA-D3-A3C3-06 1 244218069 244218069 C T ZBTB18 Silent p.V331V 0.53 TCGA-D3-A3C3-06 1 247737636 247737636 T C GCSAML Silent p.P120P 0.27 TCGA-D3-A3C3-06 1 26524784 26524784 C T CATSPER4 Missense_Mutation p.S229F 0.18 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C3-06 1 27100919 27100919 C T ARID1A Nonsense_Mutation p.Q1401* 0.19 TCGA-D3-A3C3-06 1 27106861 27106861 C T ARID1A Nonsense_Mutation p.R2158* 0.36 TCGA-D3-A3C3-06 1 27278858 27278858 C T C1orf172 Missense_Mutation p.G5E 0.41 tolerated_low_confidence(0.09) possibly_damaging(0.634) TCGA-D3-A3C3-06 1 28605701 28605701 C T SESN2 Silent p.T435T 0.28 TCGA-D3-A3C3-06 1 40777385 40777385 C T COL9A2 Silent p.G140G 0.40 TCGA-D3-A3C3-06 1 44087690 44087690 C T PTPRF 3'UTR 0.42 TCGA-D3-A3C3-06 1 47735459 47735459 G T STIL Silent p.S821S 0.16 TCGA-D3-A3C3-06 1 51204578 51204578 G A FAF1 Missense_Mutation p.L170F 0.23 deleterious(0.05) probably_damaging(0.972) TCGA-D3-A3C3-06 1 55062987 55062987 G A ACOT11 Silent p.E221E 0.50 TCGA-D3-A3C3-06 1 89844118 89844118 G A GBP6 Missense_Mutation p.G191S 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-D3-A3C3-06 1 97981298 97981298 G A DPYD Missense_Mutation p.T575I 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 20 1552525 1552525 C T SIRPB1 Missense_Mutation p.D198N 0.37 tolerated(0.23) benign(0.125) TCGA-D3-A3C3-06 20 16355048 16355048 T C KIF16B Silent p.E1068E 0.31 TCGA-D3-A3C3-06 20 3682274 3682274 G A SIGLEC1 Missense_Mutation p.P415S 0.45 deleterious(0.03) possibly_damaging(0.846) TCGA-D3-A3C3-06 20 40827898 40827898 G A PTPRT Nonsense_Mutation p.Q825* 0.33 TCGA-D3-A3C3-06 20 57569788 57569788 C T NELFCD 3'UTR 0.29 TCGA-D3-A3C3-06 20 60504712 60504712 G A CDH4 Missense_Mutation p.G684E 0.46 deleterious(0.01) possibly_damaging(0.895) TCGA-D3-A3C3-06 20 62221685 62221685 G A GMEB2 Silent p.D450D 0.12 TCGA-D3-A3C3-06 20 9449296 9449296 C G PLCB4 Missense_Mutation p.I1097M 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A3C3-06 21 14417545 14417545 T C RNU6-614P 5'Flank 0.23 TCGA-D3-A3C3-06 21 15326429 15326429 A T ANKRD20A11P RNA 0.28 TCGA-D3-A3C3-06 21 28338578 28338578 G A ADAMTS5 Missense_Mutation p.R45W 0.35 deleterious_low_confidence(0.02) benign(0) TCGA-D3-A3C3-06 21 39087108 39087108 G A KCNJ6 Missense_Mutation p.R118W 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C3-06 21 41300949 41300949 G A PCP4 Missense_Mutation p.M34I 0.28 deleterious(0.01) possibly_damaging(0.607) TCGA-D3-A3C3-06 21 41423967 41423967 C T DSCAM Silent p.T1701T 0.37 TCGA-D3-A3C3-06 21 42080602 42080602 G A DSCAM Missense_Mutation p.P47S 0.37 tolerated(0.39) probably_damaging(1) TCGA-D3-A3C3-06 21 43547871 43547871 A T UMODL1 Missense_Mutation p.N1335I 0.17 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C3-06 21 43645804 43645804 G A ABCG1 Silent p.E22E 0.25 TCGA-D3-A3C3-06 22 20458067 20458067 C A RIMBP3 Missense_Mutation p.D1079Y 0.10 deleterious(0.02) probably_damaging(0.91) TCGA-D3-A3C3-06 22 21989511 21989511 C T CCDC116 Missense_Mutation p.P387S 0.21 tolerated(0.17) benign(0.032) TCGA-D3-A3C3-06 22 30860877 30860877 G A SEC14L3 Silent p.F198F 0.47 TCGA-D3-A3C3-06 22 36689888 36689888 C T MYH9 Missense_Mutation p.G1287R 0.24 benign(0.028) TCGA-D3-A3C3-06 2 106498299 106498299 C T NCK2 Missense_Mutation p.P248S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 2 110904336 110904336 G A NPHP1 Missense_Mutation p.P505L 0.15 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C3-06 2 121746991 121746991 T A GLI2 Silent p.P1167P 0.50 TCGA-D3-A3C3-06 2 128387248 128387248 G A MYO7B Silent p.K1525K 0.23 TCGA-D3-A3C3-06 2 128387249 128387249 G A MYO7B Missense_Mutation p.G1526R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 2 137872745 137872745 C T THSD7B Silent p.L417L 0.28 TCGA-D3-A3C3-06 2 141459374 141459374 C T LRP1B Missense_Mutation p.D2115N 0.41 possibly_damaging(0.539) TCGA-D3-A3C3-06 2 1457561 1457561 C T TPO Missense_Mutation p.P193L 0.08 deleterious(0.05) benign(0.208) TCGA-D3-A3C3-06 2 1507809 1507809 G A TPO Missense_Mutation p.A826T 0.34 tolerated(1) benign(0.007) TCGA-D3-A3C3-06 2 158178151 158178151 G A ERMN Nonsense_Mutation p.R176* 0.37 TCGA-D3-A3C3-06 2 158272134 158272134 G A CYTIP 3'UTR 0.20 TCGA-D3-A3C3-06 2 179407493 179407493 T A TTN Missense_Mutation p.K32363I 0.26 TCGA-D3-A3C3-06 2 179479461 179479461 G A TTN Silent p.L16260L 0.38 TCGA-D3-A3C3-06 2 179544088 179544088 C T TTN Silent p.K11240K 0.26 TCGA-D3-A3C3-06 2 179598554 179598554 G T TTN Missense_Mutation p.Q5188K 0.22 TCGA-D3-A3C3-06 2 191795258 191795258 G T GLS Missense_Mutation p.K507N 0.49 tolerated(0.16) benign(0.132) TCGA-D3-A3C3-06 2 201436531 201436531 C T SGOL2 Silent p.L488L 0.44 TCGA-D3-A3C3-06 2 202131505 202131505 C T CASP8 Missense_Mutation p.S158F 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A3C3-06 2 207509301 207509301 G A AC010731.4 RNA 0.20 TCGA-D3-A3C3-06 2 217002897 217002897 C T XRCC5 Missense_Mutation p.P446L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3C3-06 2 220039719 220039719 C G CNPPD1 Silent p.L124L 0.17 TCGA-D3-A3C3-06 2 220073552 220073552 C T ZFAND2B Intron 0.60 TCGA-D3-A3C3-06 2 220333912 220333912 G A SPEG Missense_Mutation p.E1176K 0.35 probably_damaging(0.996) TCGA-D3-A3C3-06 2 220379942 220379942 C T ASIC4 Missense_Mutation p.L293F 0.20 tolerated(0.6) benign(0.026) TCGA-D3-A3C3-06 2 222428599 222428599 G A EPHA4 Silent p.S225S 0.24 TCGA-D3-A3C3-06 2 228195474 228195474 G A MFF Silent p.P57P 0.16 TCGA-D3-A3C3-06 2 230411694 230411694 C T DNER Missense_Mutation p.G321E 0.45 deleterious(0.04) benign(0.077) TCGA-D3-A3C3-06 2 230910574 230910574 G A SLC16A14 Missense_Mutation p.S423F 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 2 231110646 231110646 G A SP140 Missense_Mutation p.D245N 0.19 tolerated(0.23) benign(0.048) TCGA-D3-A3C3-06 2 231155249 231155249 G A SP140 Missense_Mutation p.G599R 0.22 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C3-06 2 232325380 232325394 CTTCCTCCTCCTCTT - NCL In_Frame_Del p.E267_E271del 0.13 TCGA-D3-A3C3-06 2 234465632 234465632 G A USP40 Nonsense_Mutation p.R151* 0.42 TCGA-D3-A3C3-06 2 234602101 234602101 C T UGT1A6 Missense_Mutation p.P151S 0.18 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C3-06 2 39542498 39542498 G A MAP4K3 Missense_Mutation p.S317L 0.33 deleterious(0) probably_damaging(0.989) TCGA-D3-A3C3-06 2 48873959 48873959 G A STON1-GTF2A1L Silent p.Q956Q 0.17 TCGA-D3-A3C3-06 2 65540880 65540880 G A SPRED2 Missense_Mutation p.R338C 0.20 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A3C3-06 2 65540881 65540881 G T SPRED2 Silent p.I337I 0.20 TCGA-D3-A3C3-06 3 101284693 101284693 G A TRMT10C Missense_Mutation p.M356I 0.22 deleterious(0) possibly_damaging(0.633) TCGA-D3-A3C3-06 3 114057948 114057948 C T ZBTB20 Silent p.T710T 0.44 TCGA-D3-A3C3-06 3 121340282 121340282 G A FBXO40 Silent p.G2G 0.42 TCGA-D3-A3C3-06 3 121341342 121341342 T C FBXO40 Missense_Mutation p.Y356H 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C3-06 3 124720797 124720797 G A HEG1 Missense_Mutation p.T1139M 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C3-06 3 150840679 150840679 T G MED12L Missense_Mutation p.V105G 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3C3-06 3 151535193 151535193 G A AADAC Missense_Mutation p.D60N 0.24 tolerated(0.24) benign(0.005) TCGA-D3-A3C3-06 3 167506979 167506979 C T SERPINI1 Silent p.F21F 0.48 TCGA-D3-A3C3-06 3 183967668 183967668 C T ECE2 Silent p.I62I 0.37 TCGA-D3-A3C3-06 3 184070900 184070900 C T CLCN2 Silent p.R688R 0.41 TCGA-D3-A3C3-06 3 26751075 26751075 G A LRRC3B 5'UTR 0.50 TCGA-D3-A3C3-06 3 30713657 30713657 C T TGFBR2 Missense_Mutation p.H353Y 0.43 tolerated(0.09) benign(0.264) TCGA-D3-A3C3-06 3 3133775 3133775 G T IL5RA Intron 0.60 TCGA-D3-A3C3-06 3 36873681 36873681 C T TRANK1 Missense_Mutation p.V2421M 0.22 deleterious(0.01) possibly_damaging(0.498) TCGA-D3-A3C3-06 3 38138146 38138146 C T DLEC1 Missense_Mutation p.P753L 0.29 deleterious(0) probably_damaging(0.96) TCGA-D3-A3C3-06 3 38793930 38793930 C T SCN10A Missense_Mutation p.R512Q 0.18 tolerated(0.22) benign(0.004) TCGA-D3-A3C3-06 3 43474171 43474171 T C ANO10 Missense_Mutation p.K616E 0.32 tolerated(0.32) benign(0.088) TCGA-D3-A3C3-06 3 47049364 47049364 G A NBEAL2 Silent p.R2522R 0.22 TCGA-D3-A3C3-06 3 52557513 52557513 G A STAB1 Missense_Mutation p.G2404E 0.43 deleterious(0.01) possibly_damaging(0.616) TCGA-D3-A3C3-06 3 87027686 87027686 G A VGLL3 Silent p.P131P 0.22 TCGA-D3-A3C3-06 4 106640672 106640672 C T GSTCD Silent p.I294I 0.53 TCGA-D3-A3C3-06 4 107845814 107845814 G A DKK2 Silent p.I139I 0.21 TCGA-D3-A3C3-06 4 114277622 114277622 A C ANK2 Missense_Mutation p.K2616N 0.24 possibly_damaging(0.839) TCGA-D3-A3C3-06 4 153895901 153895901 C T FHDC1 Silent p.S486S 0.23 TCGA-D3-A3C3-06 4 158234028 158234028 G A GRIA2 Splice_Site p.X222_splice 0.18 TCGA-D3-A3C3-06 4 185550459 185550459 G T CASP3 Silent p.S267S 0.14 TCGA-D3-A3C3-06 4 20734378 20734378 C T KCNIP4 Missense_Mutation p.D190N 0.19 deleterious(0.02) probably_damaging(0.949) TCGA-D3-A3C3-06 4 25265404 25265404 T C PI4K2B Silent p.L337L 0.18 TCGA-D3-A3C3-06 4 26432080 26432080 G A RBPJ Missense_Mutation p.G375R 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 4 46390788 46390788 C T GABRA2 Intron 0.35 TCGA-D3-A3C3-06 4 48906563 48906563 C T OCIAD2 Missense_Mutation p.A2T 0.37 tolerated_low_confidence(0.24) probably_damaging(0.997) TCGA-D3-A3C3-06 4 68374707 68374707 G A CENPC Missense_Mutation p.P577S 0.16 tolerated(0.05) probably_damaging(0.992) TCGA-D3-A3C3-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.12 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-D3-A3C3-06 4 74363443 74363443 G T AFM Missense_Mutation p.L422F 0.40 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C3-06 4 76788487 76788487 T A PPEF2 Nonsense_Mutation p.K579* 0.15 TCGA-D3-A3C3-06 4 76877281 76877281 C A SDAD1 Missense_Mutation p.K621N 0.20 deleterious(0) benign(0.191) TCGA-D3-A3C3-06 4 8418200 8418200 G A ACOX3 Missense_Mutation p.P17S 0.19 deleterious(0.02) possibly_damaging(0.504) TCGA-D3-A3C3-06 4 84231203 84231203 C T HPSE Missense_Mutation p.D291N 0.43 tolerated(0.19) possibly_damaging(0.666) TCGA-D3-A3C3-06 4 88534261 88534261 A C DSPP Missense_Mutation p.E308A 0.46 benign(0.366) TCGA-D3-A3C3-06 4 99064228 99064228 G A STPG2 Missense_Mutation p.S25F 0.39 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C3-06 5 136320844 136320844 C T SPOCK1 Missense_Mutation p.G326R 0.32 tolerated(0.46) benign(0.137) TCGA-D3-A3C3-06 5 13864629 13864629 C T DNAH5 Missense_Mutation p.M1491I 0.16 benign(0.072) TCGA-D3-A3C3-06 5 138718905 138718905 A G SLC23A1 Splice_Site p.X12_splice 0.23 TCGA-D3-A3C3-06 5 140203277 140203277 C T PCDHA5 Silent p.T639T 0.31 TCGA-D3-A3C3-06 5 140223009 140223009 C T PCDHA8 Silent p.I701I 0.30 TCGA-D3-A3C3-06 5 140358562 140358562 A C PCDHAC1 Missense_Mutation p.Y821S 0.19 tolerated(0.09) benign(0.065) TCGA-D3-A3C3-06 5 140581472 140581472 G C PCDHB11 Missense_Mutation p.V709L 0.11 deleterious_low_confidence(0.02) benign(0.049) TCGA-D3-A3C3-06 5 147040720 147040720 C T JAKMIP2 Missense_Mutation p.E140K 0.19 deleterious(0) benign(0.158) TCGA-D3-A3C3-06 5 149676950 149676950 G A ARSI Missense_Mutation p.P513S 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 5 21752058 21752058 C T CDH12 Missense_Mutation p.D725N 0.40 tolerated(0.14) probably_damaging(0.968) TCGA-D3-A3C3-06 5 65008804 65008804 G A SGTB Missense_Mutation p.T63I 0.37 tolerated(0.18) benign(0.002) TCGA-D3-A3C3-06 5 70806692 70806692 G T BDP1 Missense_Mutation p.G1258V 0.17 deleterious(0) probably_damaging(0.985) TCGA-D3-A3C3-06 6 131904498 131904498 G A ARG1 Silent p.K231K 0.21 TCGA-D3-A3C3-06 6 133072552 133072552 G A VNN2 Missense_Mutation p.S311L 0.58 tolerated(0.19) possibly_damaging(0.536) TCGA-D3-A3C3-06 6 160645756 160645756 C T SLC22A2 Missense_Mutation p.E528K 0.48 deleterious(0) possibly_damaging(0.472) TCGA-D3-A3C3-06 6 161143576 161143576 G A PLG Silent p.K411K 0.58 TCGA-D3-A3C3-06 6 167721377 167721377 G A UNC93A Missense_Mutation p.V363I 0.66 tolerated(0.23) benign(0.083) TCGA-D3-A3C3-06 6 27216906 27216906 G A PRSS16 Nonsense_Mutation p.W122* 0.44 TCGA-D3-A3C3-06 6 27776330 27776330 G T HIST1H2AI Missense_Mutation p.V115L 0.15 tolerated_low_confidence(0.06) probably_damaging(0.969) TCGA-D3-A3C3-06 6 29430220 29430220 G A OR2H1 Missense_Mutation p.R225K 0.35 tolerated(0.54) benign(0.042) TCGA-D3-A3C3-06 6 32906605 32906605 C T HLA-DMB Missense_Mutation p.E65K 0.35 tolerated(0.12) benign(0.239) TCGA-D3-A3C3-06 6 38816575 38816575 C G DNAH8 Missense_Mutation p.Q1516E 0.06 probably_damaging(0.92) TCGA-D3-A3C3-06 6 39159037 39159037 C G KCNK5 Missense_Mutation p.V377L 0.22 tolerated(0.3) benign(0.005) TCGA-D3-A3C3-06 6 41773651 41773651 G A USP49 Silent p.L357L 0.29 TCGA-D3-A3C3-06 6 72889559 72889559 C T RIMS1 Silent p.A251A 0.57 TCGA-D3-A3C3-06 6 93956618 93956618 C A EPHA7 Missense_Mutation p.W873L 0.61 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C3-06 7 102993251 102993251 C A PSMC2 Intron 0.24 TCGA-D3-A3C3-06 7 106871105 106871105 C T COG5 Missense_Mutation p.R739Q 0.14 tolerated(0.14) possibly_damaging(0.593) TCGA-D3-A3C3-06 7 133041262 133041262 T - EXOC4 Frame_Shift_Del p.T315Qfs*25 0.41 TCGA-D3-A3C3-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.86 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C3-06 7 141896582 141896582 C T RP11-1220K2.2 Missense_Mutation p.P1533L 0.12 probably_damaging(0.998) TCGA-D3-A3C3-06 7 142149132 142149132 C A TRBV5-5 Missense_Mutation p.G47W 0.15 deleterious(0) probably_damaging(0.91) TCGA-D3-A3C3-06 7 143657103 143657103 C T OR2F1 Missense_Mutation p.L14F 0.72 tolerated(0.17) probably_damaging(1) TCGA-D3-A3C3-06 7 143748039 143748039 T C OR2A5 Missense_Mutation p.L182P 0.58 tolerated(0.12) benign(0.168) TCGA-D3-A3C3-06 7 148951021 148951021 C G ZNF212 Missense_Mutation p.L335V 0.22 tolerated(0.3) benign(0.257) TCGA-D3-A3C3-06 7 148951046 148951046 C G ZNF212 Missense_Mutation p.S343C 0.23 tolerated(0.12) possibly_damaging(0.503) TCGA-D3-A3C3-06 7 22202161 22202161 T G RAPGEF5 Splice_Site p.X275_splice 0.42 TCGA-D3-A3C3-06 7 2275012 2275012 G A FTSJ2 Silent p.F162F 0.23 TCGA-D3-A3C3-06 7 31617677 31617677 C T CCDC129 Missense_Mutation p.R293W 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A3C3-06 7 35293197 35293197 G C TBX20 Missense_Mutation p.S12C 0.20 deleterious(0) probably_damaging(0.945) TCGA-D3-A3C3-06 7 49951789 49951789 C T VWC2 3'UTR 0.38 TCGA-D3-A3C3-06 7 65419290 65419290 C T VKORC1L1 3'UTR 0.31 TCGA-D3-A3C3-06 8 103359151 103359151 G A UBR5 Missense_Mutation p.P186S 0.53 deleterious(0) probably_damaging(0.988) TCGA-D3-A3C3-06 8 106814062 106814062 C T ZFPM2 Silent p.F584F 0.20 TCGA-D3-A3C3-06 8 118184863 118184863 G A SLC30A8 Missense_Mutation p.M351I 0.40 tolerated(1) benign(0.002) TCGA-D3-A3C3-06 8 135614396 135614396 C T ZFAT Silent p.E522E 0.32 TCGA-D3-A3C3-06 8 16007770 16007770 G A MSR1 Nonsense_Mutation p.R317* 0.30 TCGA-D3-A3C3-06 8 38033897 38033897 C T LSM1 5'UTR 0.57 TCGA-D3-A3C3-06 8 39467023 39467023 G A ADAM18 Missense_Mutation p.G96E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 8 70981780 70981780 G A PRDM14 Missense_Mutation p.H106Y 0.59 tolerated_low_confidence(0.37) benign(0) TCGA-D3-A3C3-06 8 70981781 70981781 G A PRDM14 Silent p.P105P 0.56 TCGA-D3-A3C3-06 8 82736160 82736160 G A SNX16 Missense_Mutation p.P160S 0.31 deleterious(0.02) probably_damaging(0.939) TCGA-D3-A3C3-06 8 99102126 99102126 G A C8orf47 Missense_Mutation p.G294E 0.22 tolerated(0.26) probably_damaging(0.988) TCGA-D3-A3C3-06 9 133759737 133759737 G A ABL1 Nonsense_Mutation p.W706* 0.57 TCGA-D3-A3C3-06 9 139410480 139410480 G A NOTCH1 Missense_Mutation p.A541V 0.12 deleterious(0) probably_damaging(0.936) TCGA-D3-A3C3-06 9 2123808 2123808 C T SMARCA2 Silent p.I1284I 0.62 TCGA-D3-A3C3-06 9 39171442 39171442 G A CNTNAP3 Silent p.F419F 0.47 TCGA-D3-A3C3-06 9 4567670 4567670 A G SLC1A1 Missense_Mutation p.Y162C 0.50 deleterious(0.02) probably_damaging(0.951) TCGA-D3-A3C3-06 X 106845381 106845381 C T FRMPD3 Missense_Mutation p.S1404L 0.36 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C3-06 X 107858227 107858227 G A COL4A5 Missense_Mutation p.G828R 0.28 unknown(0) TCGA-D3-A3C3-06 X 110951458 110951458 C A ALG13 Missense_Mutation p.P196H 0.29 tolerated_low_confidence(0.34) benign(0.145) TCGA-D3-A3C3-06 X 123205126 123205126 T A STAG2 Missense_Mutation p.I829N 0.21 deleterious(0) possibly_damaging(0.776) TCGA-D3-A3C3-06 X 123518237 123518237 C T TENM1 Missense_Mutation p.D2182N 0.28 deleterious(0) probably_damaging(0.929) TCGA-D3-A3C3-06 X 12904189 12904189 C T TLR7 Missense_Mutation p.P188S 0.15 tolerated(0.08) probably_damaging(0.959) TCGA-D3-A3C3-06 X 132160351 132160351 G A USP26 Missense_Mutation p.S633F 0.17 deleterious(0) probably_damaging(0.99) TCGA-D3-A3C3-06 X 14930383 14930383 G A MOSPD2 Missense_Mutation p.E298K 0.15 tolerated(0.11) benign(0.006) TCGA-D3-A3C3-06 X 149809808 149809808 C T MTM1 Missense_Mutation p.P199S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A3C3-06 X 152815568 152815568 C A ATP2B3 Silent p.G549G 0.26 TCGA-D3-A3C3-06 X 153069986 153069986 G A PDZD4 Missense_Mutation p.P378S 0.21 tolerated(1) benign(0.001) TCGA-D3-A3C3-06 X 153206955 153206955 A C RENBP Missense_Mutation p.D307E 0.22 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C3-06 X 153633863 153633863 G A DNASE1L1 Missense_Mutation p.A16V 0.31 deleterious(0.05) benign(0.104) TCGA-D3-A3C3-06 X 154215575 154215575 G A F8 Silent p.L203L 0.24 TCGA-D3-A3C3-06 X 26212798 26212798 G A MAGEB6 Missense_Mutation p.D279N 0.19 tolerated(0.59) benign(0.135) TCGA-D3-A3C3-06 X 2853151 2853151 A C ARSE Missense_Mutation p.C498G 0.55 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C3-06 X 30237430 30237430 T A MAGEB2 Missense_Mutation p.W245R 0.23 tolerated(1) benign(0) TCGA-D3-A3C3-06 X 38664492 38664492 G A MID1IP1 Missense_Mutation p.R98H 0.15 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C3-06 X 39930225 39930225 C A BCOR Splice_Site p.X1080_splice 0.20 TCGA-D3-A3C3-06 X 43571120 43571120 G A MAOA Missense_Mutation p.G103E 0.12 deleterious(0) probably_damaging(0.985) TCGA-D3-A3C3-06 X 47918858 47918858 C T ZNF630 Missense_Mutation p.G325R 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C3-06 X 53457879 53457879 C T RIBC1 Silent p.I361I 0.08 TCGA-D3-A3C3-06 X 65408329 65408329 C T HEPH Missense_Mutation p.P306S 0.27 tolerated(0.05) benign(0.081) TCGA-D3-A3C3-06 X 70523327 70523327 C T ITGB1BP2 Silent p.I143I 0.26 TCGA-D3-A3C6-06 10 18828608 18828608 G A CACNB2 Silent p.R646R 0.39 TCGA-D3-A3C6-06 10 3181112 3181112 G C PITRM1 Silent p.V968V 0.39 TCGA-D3-A3C6-06 10 48370853 48370853 G A ZNF488 Silent p.R107R 0.85 TCGA-D3-A3C6-06 10 89692922 89692922 T C PTEN Missense_Mutation p.C136R 0.73 deleterious(0.02) possibly_damaging(0.634) TCGA-D3-A3C6-06 11 123755980 123755980 C T TMEM225 Missense_Mutation p.M51I 0.29 tolerated(0.5) benign(0.322) TCGA-D3-A3C6-06 11 1273675 1273675 C T MUC5B Missense_Mutation p.S4989F 0.56 unknown(0) TCGA-D3-A3C6-06 11 18750513 18750513 C T PTPN5 Missense_Mutation p.E556K 0.50 deleterious(0.01) possibly_damaging(0.817) TCGA-D3-A3C6-06 11 43471746 43471746 C T TTC17 Silent p.S967S 0.25 TCGA-D3-A3C6-06 11 46726807 46726807 C A ZNF408 Silent p.T519T 0.52 TCGA-D3-A3C6-06 11 47345360 47345360 C A MADD Missense_Mutation p.Q1506K 0.61 tolerated(0.07) possibly_damaging(0.595) TCGA-D3-A3C6-06 11 5221880 5221880 C T OR51V1 Silent p.T17T 0.44 TCGA-D3-A3C6-06 11 5529400 5529400 G A UBQLN3 Silent p.S463S 0.47 TCGA-D3-A3C6-06 11 563535 563535 C T RASSF7 Intron 0.17 TCGA-D3-A3C6-06 11 563536 563536 C T RASSF7 Intron 0.17 TCGA-D3-A3C6-06 11 63071674 63071674 C T SLC22A10 Silent p.I460I 0.37 TCGA-D3-A3C6-06 11 63233660 63233660 G A HRASLS5 Silent p.I223I 0.52 TCGA-D3-A3C6-06 11 67177173 67177173 G A TBC1D10C Missense_Mutation p.G430E 0.42 tolerated_low_confidence(0.16) benign(0.003) TCGA-D3-A3C6-06 11 6953610 6953610 A G ZNF215 Missense_Mutation p.N36S 0.29 deleterious(0.03) benign(0) TCGA-D3-A3C6-06 11 88781050 88781050 G A GRM5 5'UTR 0.27 TCGA-D3-A3C6-06 12 12496107 12496107 C T MANSC1 Missense_Mutation p.G48R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 12 15370549 15370549 G A RERG Intron 0.53 TCGA-D3-A3C6-06 12 3600829 3600829 G A PRMT8 Missense_Mutation p.R13K 0.35 deleterious_low_confidence(0.02) benign(0.049) TCGA-D3-A3C6-06 12 44913862 44913862 C T NELL2 Missense_Mutation p.E826K 0.49 tolerated(0.27) probably_damaging(0.988) TCGA-D3-A3C6-06 12 54423524 54423524 C T HOXC6 Silent p.F162F 0.40 TCGA-D3-A3C6-06 12 56495945 56495945 C T ERBB3 3'UTR 0.36 TCGA-D3-A3C6-06 12 6636085 6636085 C T NCAPD2 Silent p.F921F 0.39 TCGA-D3-A3C6-06 13 111147731 111147731 G A COL4A2 Missense_Mutation p.G1226E 0.34 probably_damaging(0.931) TCGA-D3-A3C6-06 13 25044068 25044068 G A PARP4 Silent p.F670F 0.46 TCGA-D3-A3C6-06 13 38237678 38237678 G A TRPC4 Silent p.F521F 0.32 TCGA-D3-A3C6-06 14 22694915 22694915 G A TRAV36DV7 Missense_Mutation p.E36K 0.42 tolerated(0.09) probably_damaging(0.931) TCGA-D3-A3C6-06 14 24655957 24655957 C T IPO4 Missense_Mutation p.R266H 0.32 deleterious(0) benign(0.325) TCGA-D3-A3C6-06 14 31852869 31852869 G - HEATR5A Frame_Shift_Del p.T192Nfs*21 0.26 TCGA-D3-A3C6-06 14 39646845 39646866 AGAGACCTTATCCAGGATCAAA - PNN Frame_Shift_Del p.R126Ifs*17 0.31 TCGA-D3-A3C6-06 14 55655776 55655776 C T DLGAP5 Missense_Mutation p.R41Q 0.39 tolerated(0.22) benign(0.035) TCGA-D3-A3C6-06 14 65269006 65269006 T C SPTB Silent p.E168E 0.44 TCGA-D3-A3C6-06 14 79270122 79270122 G A NRXN3 Missense_Mutation p.R362H 0.38 deleterious(0) probably_damaging(0.989) TCGA-D3-A3C6-06 14 88477401 88477401 G A GPR65 Nonsense_Mutation p.W70* 0.40 TCGA-D3-A3C6-06 14 92157878 92157878 C T CATSPERB Missense_Mutation p.G285S 0.40 tolerated(0.07) probably_damaging(0.984) TCGA-D3-A3C6-06 14 95088748 95088748 C T SERPINA3 Nonsense_Mutation p.Q330* 0.40 TCGA-D3-A3C6-06 15 20666527 20666527 C T HERC2P3 RNA 0.30 TCGA-D3-A3C6-06 15 24923711 24923711 C T NPAP1 Silent p.S899S 0.73 TCGA-D3-A3C6-06 15 25304834 25304834 C T SNORD116-3 3'Flank 0.71 TCGA-D3-A3C6-06 15 25444523 25444523 C T SNORD115-14 3'Flank 0.74 TCGA-D3-A3C6-06 15 88522482 88522482 T G NTRK3 Intron 0.19 TCGA-D3-A3C6-06 15 90984786 90984786 C T IQGAP1 Missense_Mutation p.P233L 0.51 tolerated(0.72) benign(0.009) TCGA-D3-A3C6-06 15 99828120 99828120 C T LRRC28 Nonsense_Mutation p.R117* 0.35 TCGA-D3-A3C6-06 16 17211549 17211549 G A XYLT1 Silent p.F837F 0.29 TCGA-D3-A3C6-06 16 21273402 21273402 G T CRYM Missense_Mutation p.Q251K 0.45 tolerated(0.15) benign(0) TCGA-D3-A3C6-06 16 30199304 30199304 C T CORO1A Silent p.A301A 0.37 TCGA-D3-A3C6-06 16 30522249 30522249 G A ITGAL Silent p.G889G 0.41 TCGA-D3-A3C6-06 16 55522457 55522457 C T MMP2 Silent p.L279L 0.36 TCGA-D3-A3C6-06 16 70891730 70891730 G A HYDIN Missense_Mutation p.S4058L 0.11 benign(0.008) TCGA-D3-A3C6-06 16 71668443 71668443 G A MARVELD3 Intron 0.40 TCGA-D3-A3C6-06 17 21731529 21731529 T C UBBP4 Silent p.L202L 0.48 TCGA-D3-A3C6-06 17 4463750 4463750 C T GGT6 Missense_Mutation p.E23K 0.43 deleterious_low_confidence(0.04) benign(0.156) TCGA-D3-A3C6-06 17 4805634 4805634 G A C17orf107 3'UTR 0.34 TCGA-D3-A3C6-06 17 48263002 48263002 G A COL1A1 Missense_Mutation p.T1419I 0.54 unknown(0) TCGA-D3-A3C6-06 17 5073801 5073801 G A USP6 Missense_Mutation p.G1182E 0.39 tolerated_low_confidence(0.12) benign(0.201) TCGA-D3-A3C6-06 17 52978152 52978152 G A TOM1L1 5'UTR 0.38 TCGA-D3-A3C6-06 17 52978153 52978153 G A TOM1L1 5'UTR 0.39 TCGA-D3-A3C6-06 17 6329120 6329120 C A AIPL1 Missense_Mutation p.R272L 0.39 deleterious(0) possibly_damaging(0.866) TCGA-D3-A3C6-06 18 33257586 33257586 C T GALNT1 Missense_Mutation p.P116S 0.70 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A3C6-06 18 61390507 61390507 G A SERPINB11 Silent p.G351G 0.88 TCGA-D3-A3C6-06 18 72346087 72346087 C T ZNF407 Missense_Mutation p.R1038W 0.74 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 19 15757879 15757879 G A CYP4F3 Missense_Mutation p.D121N 0.47 tolerated(0.07) benign(0.119) TCGA-D3-A3C6-06 19 17394647 17394647 C T ANKLE1 Silent p.V358V 0.42 TCGA-D3-A3C6-06 19 17678331 17678331 G C COLGALT1 Missense_Mutation p.W202C 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 19 20116763 20116763 G A ZNF682 3'UTR 0.54 TCGA-D3-A3C6-06 19 39805548 39805548 G A LRFN1 Silent p.I143I 0.39 TCGA-D3-A3C6-06 19 42213851 42213851 C T CEA Missense_Mutation p.S106F 0.43 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C6-06 19 46823707 46823707 G A HIF3A Missense_Mutation p.E345K 0.39 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A3C6-06 19 49477944 49477944 G A GYS1 Missense_Mutation p.S452F 0.36 tolerated(0.09) possibly_damaging(0.656) TCGA-D3-A3C6-06 19 53913935 53913935 T C ZNF765 3'UTR 0.45 TCGA-D3-A3C6-06 19 58437712 58437712 G A ZNF418 Missense_Mutation p.H613Y 0.37 deleterious(0) possibly_damaging(0.684) TCGA-D3-A3C6-06 19 7986931 7986931 C T SNAPC2 Silent p.I128I 0.39 TCGA-D3-A3C6-06 19 8176585 8176585 G A FBN3 Missense_Mutation p.S1344F 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C6-06 19 9057011 9057011 G A MUC16 Silent p.S10145S 0.34 TCGA-D3-A3C6-06 19 9074565 9074565 G A MUC16 Missense_Mutation p.S4294F 0.41 unknown(0) TCGA-D3-A3C6-06 1 111437611 111437611 C A CD53 Silent p.T119T 0.35 TCGA-D3-A3C6-06 1 145578322 145578322 C A PIAS3 Silent p.P95P 0.45 TCGA-D3-A3C6-06 1 155011916 155011916 C T DCST1 Silent p.I100I 0.47 TCGA-D3-A3C6-06 1 156873722 156873722 T A PEAR1 Missense_Mutation p.S2T 0.36 tolerated_low_confidence(0.19) benign(0) TCGA-D3-A3C6-06 1 157771705 157771705 C T FCRL1 Missense_Mutation p.V296M 0.45 tolerated(0.07) probably_damaging(0.954) TCGA-D3-A3C6-06 1 200969662 200969662 G A KIF21B Missense_Mutation p.P514L 0.45 deleterious(0.02) benign(0.122) TCGA-D3-A3C6-06 1 201782312 201782312 C T NAV1 Missense_Mutation p.R1756W 0.34 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C6-06 1 204588913 204588913 C T LRRN2 Missense_Mutation p.G70S 0.41 tolerated(0.08) possibly_damaging(0.795) TCGA-D3-A3C6-06 1 227083261 227083261 C T PSEN2 Missense_Mutation p.S443F 0.50 tolerated(0.61) benign(0.002) TCGA-D3-A3C6-06 1 23111073 23111073 C A EPHB2 Silent p.G105G 0.12 TCGA-D3-A3C6-06 1 248224777 248224777 G A OR2L3 Missense_Mutation p.R265Q 0.29 tolerated(0.07) benign(0.056) TCGA-D3-A3C6-06 1 89846141 89846141 T G GBP6 Silent p.T274T 0.60 TCGA-D3-A3C6-06 20 1457799 1457799 A T SIRPB2 Intron 0.50 TCGA-D3-A3C6-06 20 40980729 40980729 A T PTPRT Missense_Mutation p.I586N 0.36 deleterious(0) benign(0.191) TCGA-D3-A3C6-06 20 43142583 43142583 G A SERINC3 Silent p.L46L 0.29 TCGA-D3-A3C6-06 20 44171395 44171395 C T EPPIN Missense_Mutation p.G112E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 20 50286611 50286611 G A ATP9A Silent p.L406L 0.37 TCGA-D3-A3C6-06 20 50406909 50406909 A T SALL4 Missense_Mutation p.S705T 0.37 tolerated(0.12) benign(0.003) TCGA-D3-A3C6-06 20 57828183 57828183 G A ZNF831 Missense_Mutation p.R1393Q 0.37 tolerated(0.65) benign(0.03) TCGA-D3-A3C6-06 21 11038893 11038893 C T BAGE2 RNA 0.06 TCGA-D3-A3C6-06 21 46066862 46066862 G A KRTAP10-11 Missense_Mutation p.E163K 0.41 tolerated(0.59) unknown(0) TCGA-D3-A3C6-06 2 162719558 162719558 C T SLC4A10 Missense_Mutation p.S251F 0.69 tolerated(0.07) probably_damaging(0.914) TCGA-D3-A3C6-06 2 168099467 168099467 C T XIRP2 Missense_Mutation p.S522F 0.79 probably_damaging(0.997) TCGA-D3-A3C6-06 2 190927323 190927323 G A MSTN 5'UTR 0.76 TCGA-D3-A3C6-06 2 234202909 234202909 C T ATG16L1 Silent p.S579S 0.49 TCGA-D3-A3C6-06 2 236715898 236715898 G A AGAP1 Missense_Mutation p.D325N 0.82 tolerated(0.05) possibly_damaging(0.905) TCGA-D3-A3C6-06 3 16264263 16264263 G A GALNT15 Missense_Mutation p.E591K 0.77 tolerated(0.11) possibly_damaging(0.676) TCGA-D3-A3C6-06 3 179593214 179593214 C T PEX5L Missense_Mutation p.R186Q 0.39 tolerated_low_confidence(0.05) benign(0.004) TCGA-D3-A3C6-06 3 183679345 183679345 G A ABCC5 Missense_Mutation p.A778V 0.36 deleterious(0) probably_damaging(0.97) TCGA-D3-A3C6-06 3 193032880 193032880 T A ATP13A5 Missense_Mutation p.K680I 0.35 tolerated(0.12) benign(0.392) TCGA-D3-A3C6-06 3 98110314 98110314 G A OR5K3 Missense_Mutation p.D269N 0.83 deleterious(0.05) benign(0.4) TCGA-D3-A3C6-06 4 104063010 104063010 T C CENPE Missense_Mutation p.Q1787R 0.54 benign(0.037) TCGA-D3-A3C6-06 4 110662164 110662164 C A CFI Missense_Mutation p.W546L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C6-06 4 111482794 111482794 G A ENPEP 3'UTR 0.39 TCGA-D3-A3C6-06 4 111542323 111542323 G A PITX2 Silent p.V136V 0.42 TCGA-D3-A3C6-06 4 151850033 151850033 A G LRBA Missense_Mutation p.V134A 0.32 deleterious(0) possibly_damaging(0.907) TCGA-D3-A3C6-06 4 188923956 188923956 G A ZFP42 5'UTR 0.42 TCGA-D3-A3C6-06 4 55956162 55956162 C T KDR Silent p.R1051R 0.43 TCGA-D3-A3C6-06 4 6064049 6064049 C A JAKMIP1 Missense_Mutation p.R517M 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A3C6-06 4 62813993 62813993 A G LPHN3 Missense_Mutation p.K867R 0.39 tolerated(0.33) benign(0.211) TCGA-D3-A3C6-06 4 80328222 80328222 C T GK2 Missense_Mutation p.G378E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 5 140474556 140474556 T C PCDHB2 Missense_Mutation p.L61P 0.75 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3C6-06 5 140501747 140501747 G A PCDHB4 Missense_Mutation p.G56E 0.69 tolerated_low_confidence(0.3) benign(0.279) TCGA-D3-A3C6-06 5 140501748 140501748 G A PCDHB4 Silent p.G56G 0.69 TCGA-D3-A3C6-06 5 140516849 140516849 C A PCDHB5 Silent p.P611P 0.77 TCGA-D3-A3C6-06 6 133055466 133055466 C T VNN3 Silent p.R90R 0.72 TCGA-D3-A3C6-06 6 146625858 146625858 C T GRM1 Silent p.F354F 0.71 TCGA-D3-A3C6-06 6 31550182 31550182 C T LTB Missense_Mutation p.G5R 0.55 tolerated(0.09) unknown(0) TCGA-D3-A3C6-06 6 31654809 31654809 G A ABHD16A 3'UTR 0.62 TCGA-D3-A3C6-06 6 31744326 31744326 G A VWA7 Silent p.F77F 0.51 TCGA-D3-A3C6-06 6 49665657 49665657 G A CRISP2 Missense_Mutation p.S144L 0.39 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A3C6-06 7 102518846 102518846 C T FBXL13 Silent p.R480R 0.44 TCGA-D3-A3C6-06 7 103008169 103008169 C T PSMC2 Missense_Mutation p.H353Y 0.38 deleterious(0) benign(0.153) TCGA-D3-A3C6-06 7 138764565 138764565 C T ZC3HAV1 Silent p.K374K 0.43 TCGA-D3-A3C6-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C6-06 7 142180667 142180667 C T TRBV6-5 Silent p.L64L 0.14 TCGA-D3-A3C6-06 7 150707703 150707703 G A NOS3 Missense_Mutation p.E902K 0.31 tolerated(0.53) possibly_damaging(0.737) TCGA-D3-A3C6-06 7 151945151 151945151 C T KMT2C Missense_Mutation p.D790N 0.04 benign(0.309) TCGA-D3-A3C6-06 7 4308365 4308365 G T SDK1 3'UTR 0.39 TCGA-D3-A3C6-06 7 44189377 44189377 C T GCK Missense_Mutation p.E222K 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A3C6-06 7 87144604 87144604 C T ABCB1 Silent p.G1075G 0.27 TCGA-D3-A3C6-06 8 145139185 145139185 C T GPAA1 Silent p.F255F 0.55 TCGA-D3-A3C6-06 8 146017189 146017189 G A RPL8 Silent p.H83H 0.64 TCGA-D3-A3C6-06 8 30705724 30705724 G A TEX15 Silent p.I270I 0.75 TCGA-D3-A3C6-06 8 35647892 35647892 C T UNC5D Silent p.F891F 0.41 TCGA-D3-A3C6-06 8 66992777 66992777 G A DNAJC5B Missense_Mutation p.E167K 0.27 deleterious(0.05) benign(0.002) TCGA-D3-A3C6-06 8 82645023 82645023 C T CHMP4C Silent p.A54A 0.48 TCGA-D3-A3C6-06 8 97797463 97797463 G T CPQ Missense_Mutation p.W113L 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 9 78938053 78938053 C T PCSK5 Silent p.V1369V 0.87 TCGA-D3-A3C6-06 X 100105231 100105231 C T NOX1 Missense_Mutation p.E348K 0.83 deleterious(0) probably_damaging(0.955) TCGA-D3-A3C6-06 X 139865915 139865915 C T CDR1 Nonsense_Mutation p.W206* 0.75 TCGA-D3-A3C6-06 X 140995638 140995638 C T MAGEC1 Silent p.S816S 0.78 TCGA-D3-A3C6-06 X 34150006 34150006 G A FAM47A Silent p.P130P 0.69 TCGA-D3-A3C6-06 X 34150007 34150007 G A FAM47A Missense_Mutation p.P130L 0.70 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C6-06 X 35985897 35985897 C T CXorf22 Missense_Mutation p.P588S 0.79 deleterious(0) probably_damaging(1) TCGA-D3-A3C6-06 X 53279585 53279585 G A IQSEC2 Missense_Mutation p.P725S 0.87 tolerated(0.1) possibly_damaging(0.854) TCGA-D3-A3C6-06 X 69282557 69282557 G A OTUD6A Silent p.Q61Q 0.71 TCGA-D3-A3C6-06 X 71358756 71358756 G A NHSL2 Missense_Mutation p.G453E 0.80 tolerated(0.06) benign(0.382) TCGA-D3-A3C6-06 X 72434151 72434151 C T NAP1L2 Missense_Mutation p.E60K 0.84 tolerated(0.72) benign(0.016) TCGA-D3-A3C7-06 10 123844662 123844662 G A TACC2 Missense_Mutation p.E883K 0.50 possibly_damaging(0.504) TCGA-D3-A3C7-06 10 13323103 13323103 G A PHYH Missense_Mutation p.S279F 0.62 deleterious(0) probably_damaging(0.977) TCGA-D3-A3C7-06 10 13522979 13522979 G A BEND7 Missense_Mutation p.S276F 0.70 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D3-A3C7-06 10 135350654 135350654 C T CYP2E1 Missense_Mutation p.A352V 0.43 deleterious(0) possibly_damaging(0.568) TCGA-D3-A3C7-06 10 20436730 20436730 C T PLXDC2 Nonsense_Mutation p.Q228* 0.65 TCGA-D3-A3C7-06 10 24762301 24762301 C T KIAA1217 Missense_Mutation p.P331S 0.65 tolerated(0.13) probably_damaging(0.999) TCGA-D3-A3C7-06 10 28224181 28224181 C T ARMC4 Silent p.K751K 0.62 TCGA-D3-A3C7-06 10 30336727 30336727 T A KIAA1462 Missense_Mutation p.E5D 0.62 deleterious(0.03) possibly_damaging(0.589) TCGA-D3-A3C7-06 10 44868661 44868661 C T CXCL12 3'Flank 0.34 TCGA-D3-A3C7-06 10 5042641 5042641 C T AKR1C2 Intron 0.58 TCGA-D3-A3C7-06 10 51974589 51974589 C T ASAH2 Missense_Mutation p.D352N 0.40 deleterious(0) probably_damaging(0.973) TCGA-D3-A3C7-06 10 61832232 61832232 C T ANK3 Missense_Mutation p.D2803N 0.55 benign(0.035) TCGA-D3-A3C7-06 10 61965560 61965560 G A ANK3 Missense_Mutation p.A428V 0.62 probably_damaging(0.994) TCGA-D3-A3C7-06 10 63170154 63170154 C T TMEM26 Missense_Mutation p.E345K 0.55 tolerated_low_confidence(0.84) benign(0.022) TCGA-D3-A3C7-06 10 70514543 70514543 G A CCAR1 Missense_Mutation p.E473K 0.71 deleterious(0.02) possibly_damaging(0.899) TCGA-D3-A3C7-06 10 71689802 71689802 G A COL13A1 Missense_Mutation p.E486K 0.55 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C7-06 10 73462447 73462447 A T CDH23 Missense_Mutation p.Y502F 0.69 tolerated(1) benign(0.005) TCGA-D3-A3C7-06 10 74619034 74619034 C T MCU Missense_Mutation p.S107F 0.52 deleterious(0) possibly_damaging(0.805) TCGA-D3-A3C7-06 10 75527676 75527676 C T SEC24C Missense_Mutation p.L698F 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 10 7751130 7751130 G A ITIH2 Missense_Mutation p.G113E 0.48 tolerated(0.18) possibly_damaging(0.829) TCGA-D3-A3C7-06 10 7817756 7817756 G A KIN Missense_Mutation p.P189S 0.60 tolerated(0.24) benign(0.007) TCGA-D3-A3C7-06 10 81701826 81701826 C T SFTPD Missense_Mutation p.G145E 0.56 deleterious(0.04) benign(0.437) TCGA-D3-A3C7-06 10 82331323 82331323 G A SH2D4B Missense_Mutation p.E162K 0.52 deleterious(0.05) probably_damaging(0.973) TCGA-D3-A3C7-06 10 90438385 90438385 C T LIPF Missense_Mutation p.P392S 0.62 deleterious(0.04) possibly_damaging(0.628) TCGA-D3-A3C7-06 10 90733018 90733018 G A ACTA2 Intron 0.59 TCGA-D3-A3C7-06 10 93389689 93389689 G A PPP1R3C Nonsense_Mutation p.R317* 0.70 TCGA-D3-A3C7-06 10 95372779 95372779 C T PDE6C Silent p.F99F 0.59 TCGA-D3-A3C7-06 10 97388165 97388165 C T ALDH18A1 Missense_Mutation p.G298E 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 10 97388166 97388166 C T ALDH18A1 Missense_Mutation p.G298R 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 10 97607239 97607239 C T ENTPD1 Missense_Mutation p.H296Y 0.67 deleterious(0.02) benign(0.222) TCGA-D3-A3C7-06 11 102937231 102937231 G A DCUN1D5 Missense_Mutation p.S136L 0.57 tolerated(0.67) benign(0.005) TCGA-D3-A3C7-06 11 103908174 103908174 G A DDI1 Silent p.R208R 0.62 TCGA-D3-A3C7-06 11 113780017 113780017 G A HTR3B Missense_Mutation p.G18E 0.65 tolerated(0.08) benign(0.018) TCGA-D3-A3C7-06 11 117302311 117302311 G A DSCAML1 Silent p.S1831S 0.60 TCGA-D3-A3C7-06 11 117651308 117651308 G A DSCAML1 Silent p.S148S 0.50 TCGA-D3-A3C7-06 11 118373178 118373178 C T KMT2A Nonsense_Mutation p.R2191* 0.54 TCGA-D3-A3C7-06 11 118375900 118375900 C T KMT2A Missense_Mutation p.P3098L 0.65 probably_damaging(0.972) TCGA-D3-A3C7-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.58 deleterious(0) benign(0.398) TCGA-D3-A3C7-06 11 123814360 123814360 G A OR6T1 Silent p.F62F 0.66 TCGA-D3-A3C7-06 11 124253229 124253229 C T OR8B2 Missense_Mutation p.R4K 0.50 tolerated_low_confidence(0.31) benign(0.001) TCGA-D3-A3C7-06 11 1432786 1432786 C T BRSK2 Missense_Mutation p.P51L 0.67 tolerated_low_confidence(0.55) possibly_damaging(0.851) TCGA-D3-A3C7-06 11 16340070 16340070 G A SOX6 Missense_Mutation p.R123C 0.65 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 11 19955420 19955420 C T NAV2 Missense_Mutation p.P567S 0.76 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 11 32995058 32995058 C T QSER1 Missense_Mutation p.T1645I 0.45 deleterious(0) probably_damaging(0.992) TCGA-D3-A3C7-06 11 43380494 43380494 G A TTC17 5'UTR 0.78 TCGA-D3-A3C7-06 11 47736196 47736196 G T AGBL2 Missense_Mutation p.P3T 0.56 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3C7-06 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.63 tolerated(0.09) benign(0.141) TCGA-D3-A3C7-06 11 4976637 4976637 C T OR51A2 Missense_Mutation p.E103K 0.67 deleterious(0.02) probably_damaging(0.911) TCGA-D3-A3C7-06 11 5021068 5021068 C T OR51L1 Missense_Mutation p.P286S 0.74 deleterious(0.01) possibly_damaging(0.674) TCGA-D3-A3C7-06 11 57886273 57886273 A G OR9I1 Missense_Mutation p.L215P 0.39 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C7-06 11 58207395 58207395 G A OR5B12 Missense_Mutation p.P77L 0.74 deleterious_low_confidence(0) possibly_damaging(0.666) TCGA-D3-A3C7-06 11 58604849 58604849 G A GLYATL2 Missense_Mutation p.H70Y 0.61 tolerated(0.26) benign(0.007) TCGA-D3-A3C7-06 11 5906158 5906158 G A OR52E4 Silent p.V212V 0.60 TCGA-D3-A3C7-06 11 60785429 60785429 C T CD6 Missense_Mutation p.S594F 0.57 tolerated(0.26) benign(0.156) TCGA-D3-A3C7-06 11 6191292 6191292 G A OR52B2 Missense_Mutation p.L89F 0.55 tolerated(1) benign(0.002) TCGA-D3-A3C7-06 11 62300683 62300683 G A AHNAK Silent p.P402P 0.71 TCGA-D3-A3C7-06 11 62603256 62603256 G A WDR74 Missense_Mutation p.P143S 0.80 tolerated(0.32) benign(0.009) TCGA-D3-A3C7-06 11 63283879 63283879 G A LGALS12 3'UTR 0.64 TCGA-D3-A3C7-06 11 64900952 64900952 G A SYVN1 Missense_Mutation p.P41S 0.55 deleterious(0.01) possibly_damaging(0.596) TCGA-D3-A3C7-06 11 68846357 68846357 C T TPCN2 Intron 0.66 TCGA-D3-A3C7-06 11 73602227 73602227 C T PAAF1 Missense_Mutation p.S88F 0.61 tolerated(0.1) possibly_damaging(0.694) TCGA-D3-A3C7-06 11 7818388 7818388 G A OR5P2 Silent p.I34I 0.76 TCGA-D3-A3C7-06 12 101368632 101368632 C T ANO4 Silent p.I154I 0.47 TCGA-D3-A3C7-06 12 103700002 103700002 G A C12orf42 Silent p.F127F 0.38 TCGA-D3-A3C7-06 12 104092977 104092977 T A STAB2 Missense_Mutation p.F1229Y 0.42 tolerated(1) benign(0.079) TCGA-D3-A3C7-06 12 104376924 104376924 C T TDG Missense_Mutation p.R209C 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C7-06 12 10569321 10569321 G A KLRC3 Missense_Mutation p.R178C 0.38 tolerated(0.06) possibly_damaging(0.838) TCGA-D3-A3C7-06 12 10599208 10599208 C T KLRC1 Missense_Mutation p.R215Q 0.28 tolerated(0.09) benign(0.102) TCGA-D3-A3C7-06 12 107126816 107126816 C T RFX4 Missense_Mutation p.S538F 0.39 deleterious(0.04) benign(0.01) TCGA-D3-A3C7-06 12 108029125 108029125 C T BTBD11 Missense_Mutation p.P899S 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A3C7-06 12 108685854 108685854 G A CMKLR1 Silent p.L296L 0.35 TCGA-D3-A3C7-06 12 10959048 10959048 G A TAS2R8 Missense_Mutation p.P178S 0.38 tolerated(0.64) benign(0.016) TCGA-D3-A3C7-06 12 109698356 109698356 C T ACACB Silent p.L2190L 0.35 TCGA-D3-A3C7-06 12 112121036 112121036 G A BRAP Missense_Mutation p.P53L 0.34 tolerated(0.15) benign(0.034) TCGA-D3-A3C7-06 12 112121037 112121037 G A BRAP Missense_Mutation p.P53S 0.34 tolerated(0.48) benign(0.001) TCGA-D3-A3C7-06 12 112498129 112498129 A T NAA25 Silent p.S464S 0.29 TCGA-D3-A3C7-06 12 113328703 113328703 C T RPH3A Missense_Mutation p.S557F 0.33 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 12 113645327 113645327 G A IQCD Silent p.I215I 0.33 TCGA-D3-A3C7-06 12 114392984 114392984 G A RBM19 Silent p.T291T 0.22 TCGA-D3-A3C7-06 12 114392985 114392985 G T RBM19 Missense_Mutation p.T291N 0.21 deleterious(0.05) benign(0.197) TCGA-D3-A3C7-06 12 117726024 117726024 C T NOS1 Missense_Mutation p.E328K 0.37 tolerated(0.89) benign(0.004) TCGA-D3-A3C7-06 12 117968819 117968819 C T KSR2 Splice_Site p.X577_splice 0.32 TCGA-D3-A3C7-06 12 118693341 118693341 A G TAOK3 Missense_Mutation p.I11T 0.32 tolerated(0.06) benign(0.027) TCGA-D3-A3C7-06 12 121469308 121469308 G A OASL Silent p.F198F 0.34 TCGA-D3-A3C7-06 12 121986882 121986882 G A KDM2B Silent p.L195L 0.40 TCGA-D3-A3C7-06 12 122669150 122669150 G A LRRC43 Missense_Mutation p.E79K 0.31 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 12 124114980 124114980 G A EIF2B1 Silent p.F72F 0.42 TCGA-D3-A3C7-06 12 124497283 124497283 C T ZNF664 Missense_Mutation p.P198S 0.39 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C7-06 12 124497284 124497284 C T ZNF664 Missense_Mutation p.P198L 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A3C7-06 12 124796378 124796378 C T FAM101A 5'UTR 0.64 TCGA-D3-A3C7-06 12 130185047 130185047 G A TMEM132D Silent p.V92V 0.39 TCGA-D3-A3C7-06 12 133249242 133249242 G A POLE Missense_Mutation p.R553C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 12 14958949 14958949 G A SMCO3 Silent p.H222H 0.33 TCGA-D3-A3C7-06 12 1940342 1940342 C T LRTM2 Silent p.F103F 0.29 TCGA-D3-A3C7-06 12 19418703 19418703 C T PLEKHA5 Silent p.I210I 0.28 TCGA-D3-A3C7-06 12 19418704 19418704 C T PLEKHA5 Silent p.L211L 0.29 TCGA-D3-A3C7-06 12 20854341 20854341 G A SLCO1C1 Silent p.R73R 0.36 TCGA-D3-A3C7-06 12 21069243 21069243 C T SLCO1B3 3'UTR 0.30 TCGA-D3-A3C7-06 12 25267737 25267737 G A CASC1 Silent p.F488F 0.31 TCGA-D3-A3C7-06 12 26714877 26714877 G A ITPR2 Missense_Mutation p.R1547C 0.34 deleterious(0) possibly_damaging(0.847) TCGA-D3-A3C7-06 12 2706657 2706657 C T CACNA1C Missense_Mutation p.L970F 0.39 deleterious(0.01) possibly_damaging(0.761) TCGA-D3-A3C7-06 12 2927308 2927308 C T ITFG2 Missense_Mutation p.H91Y 0.38 tolerated(0.2) benign(0.016) TCGA-D3-A3C7-06 12 29786178 29786178 G A TMTC1 Missense_Mutation p.P344S 0.39 deleterious(0) possibly_damaging(0.902) TCGA-D3-A3C7-06 12 31945136 31945136 C T H3F3C 5'UTR 0.31 TCGA-D3-A3C7-06 12 32481244 32481244 C T BICD1 Missense_Mutation p.R619C 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 12 39731002 39731002 G A KIF21A Missense_Mutation p.R772C 0.36 deleterious(0.03) benign(0.359) TCGA-D3-A3C7-06 12 40114841 40114841 G A C12orf40 Missense_Mutation p.D583N 0.37 tolerated(1) benign(0) TCGA-D3-A3C7-06 12 41967587 41967587 A T PDZRN4 Missense_Mutation p.K1002N 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 12 43817684 43817684 A C ADAMTS20 Intron 0.38 TCGA-D3-A3C7-06 12 43862502 43862502 G A ADAMTS20 Missense_Mutation p.S375L 0.45 deleterious(0) benign(0.137) TCGA-D3-A3C7-06 12 45429804 45429804 G A DBX2 Missense_Mutation p.P166L 0.35 deleterious(0) benign(0.19) TCGA-D3-A3C7-06 12 48141519 48141519 G A RAPGEF3 Silent p.D483D 0.30 TCGA-D3-A3C7-06 12 48737346 48737346 G A ZNF641 Missense_Mutation p.L243F 0.24 deleterious(0.04) benign(0.007) TCGA-D3-A3C7-06 12 49952686 49952686 G A MCRS1 Silent p.I427I 0.40 TCGA-D3-A3C7-06 12 51281090 51281090 A G TMPRSS12 Missense_Mutation p.R281G 0.32 deleterious(0) possibly_damaging(0.875) TCGA-D3-A3C7-06 12 51590675 51590675 G A POU6F1 5'UTR 0.50 TCGA-D3-A3C7-06 12 51851149 51851149 C T SLC4A8 Nonsense_Mutation p.Q197* 0.46 TCGA-D3-A3C7-06 12 52760976 52760976 G A KRT85 Nonsense_Mutation p.R72* 0.34 TCGA-D3-A3C7-06 12 52760977 52760977 G A KRT85 Silent p.F71F 0.31 TCGA-D3-A3C7-06 12 53166662 53166662 C T KRT76 Missense_Mutation p.D293N 0.36 deleterious(0.02) possibly_damaging(0.734) TCGA-D3-A3C7-06 12 53722232 53722232 C T SP7 Missense_Mutation p.G332S 0.26 deleterious(0) probably_damaging(0.989) TCGA-D3-A3C7-06 12 53819505 53819505 G A AMHR2 Nonsense_Mutation p.W218* 0.35 TCGA-D3-A3C7-06 12 54405187 54405187 C T HOXC8 3'UTR 0.49 TCGA-D3-A3C7-06 12 54966942 54966942 C T PDE1B Missense_Mutation p.S249L 0.35 deleterious(0) benign(0.105) TCGA-D3-A3C7-06 12 55886239 55886239 C T OR6C68 Silent p.F26F 0.44 TCGA-D3-A3C7-06 12 56031458 56031458 C T OR10P1 Silent p.I261I 0.33 TCGA-D3-A3C7-06 12 56031459 56031459 C T OR10P1 Missense_Mutation p.R262W 0.35 deleterious(0.03) benign(0.192) TCGA-D3-A3C7-06 12 56566415 56566415 A G SMARCC2 Missense_Mutation p.F575S 0.38 deleterious(0) benign(0.307) TCGA-D3-A3C7-06 12 56715907 56715907 G A PAN2 Missense_Mutation p.L919F 0.38 deleterious(0.02) benign(0.142) TCGA-D3-A3C7-06 12 57843541 57843541 C T INHBC Silent p.I265I 0.17 TCGA-D3-A3C7-06 12 58087910 58087910 G A OS9 5'UTR 0.35 TCGA-D3-A3C7-06 12 5915239 5915239 C T ANO2 Silent p.E319E 0.37 TCGA-D3-A3C7-06 12 6030450 6030450 C T ANO2 Missense_Mutation p.R93K 0.29 deleterious(0.03) benign(0.355) TCGA-D3-A3C7-06 12 6463605 6463605 C T SCNN1A Nonsense_Mutation p.W512* 0.41 TCGA-D3-A3C7-06 12 6464564 6464564 G A SCNN1A Silent p.F398F 0.29 TCGA-D3-A3C7-06 12 70070720 70070720 G A BEST3 Silent p.F281F 0.34 TCGA-D3-A3C7-06 12 7043347 7043347 G T ATN1 Missense_Mutation p.M12I 0.24 possibly_damaging(0.875) TCGA-D3-A3C7-06 12 7069157 7069157 G A PTPN6 Missense_Mutation p.G477S 0.34 deleterious(0) probably_damaging(0.943) TCGA-D3-A3C7-06 12 70988397 70988397 C T PTPRB Missense_Mutation p.D456N 0.30 tolerated(0.07) possibly_damaging(0.465) TCGA-D3-A3C7-06 12 78400636 78400636 C T NAV3 Missense_Mutation p.P440S 0.35 tolerated(0.06) benign(0.058) TCGA-D3-A3C7-06 12 78562585 78562585 G T NAV3 Missense_Mutation p.Q1640H 0.32 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C7-06 12 86373853 86373853 T A MGAT4C Silent p.S217S 0.38 TCGA-D3-A3C7-06 12 8673834 8673834 G A CLEC4D Silent p.R205R 0.33 TCGA-D3-A3C7-06 12 8687260 8687260 G A CLEC4E Missense_Mutation p.P212S 0.37 tolerated_low_confidence(0.38) benign(0.01) TCGA-D3-A3C7-06 12 8808044 8808044 C A MFAP5 Splice_Site p.X47_splice 0.28 TCGA-D3-A3C7-06 12 8982357 8982357 C T A2ML1 Silent p.F148F 0.37 TCGA-D3-A3C7-06 12 9266120 9266120 G A A2M Missense_Mutation p.P36S 0.38 deleterious(0.01) benign(0.197) TCGA-D3-A3C7-06 12 95228349 95228349 A T MIR492 3'Flank 0.50 TCGA-D3-A3C7-06 12 96350710 96350710 C T AMDHD1 Missense_Mutation p.A186V 0.31 tolerated(0.08) benign(0.009) TCGA-D3-A3C7-06 13 113714954 113714954 G A MCF2L Silent p.T139T 0.68 TCGA-D3-A3C7-06 13 21217703 21217703 C T IFT88 Missense_Mutation p.R607C 0.34 deleterious(0.03) benign(0.258) TCGA-D3-A3C7-06 13 23907016 23907016 G A SACS Missense_Mutation p.H3667Y 0.36 probably_damaging(0.977) TCGA-D3-A3C7-06 13 29012394 29012394 C T FLT1 Silent p.R159R 0.38 TCGA-D3-A3C7-06 13 30066811 30066811 G A MTUS2 Silent p.K1188K 0.37 TCGA-D3-A3C7-06 13 31903644 31903644 C T B3GALTL Missense_Mutation p.P446S 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 13 32366933 32366933 G A RXFP2 Missense_Mutation p.M498I 0.43 tolerated(0.86) benign(0.001) TCGA-D3-A3C7-06 13 33016551 33016551 A C N4BP2L2 Missense_Mutation p.L708R 0.48 deleterious(0) probably_damaging(0.99) TCGA-D3-A3C7-06 13 37453563 37453563 G A SMAD9 Silent p.P88P 0.41 TCGA-D3-A3C7-06 13 37678626 37678626 G A CSNK1A1L Silent p.F256F 0.46 TCGA-D3-A3C7-06 13 37679361 37679361 G A CSNK1A1L Silent p.L11L 0.46 TCGA-D3-A3C7-06 13 38144728 38144728 C T POSTN Missense_Mutation p.R753Q 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.669) TCGA-D3-A3C7-06 13 41705314 41705314 G A KBTBD6 Missense_Mutation p.P445L 0.37 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A3C7-06 13 52604978 52604978 C T UTP14C Nonsense_Mutation p.Q680* 0.39 TCGA-D3-A3C7-06 13 60453373 60453373 G A DIAPH3 Missense_Mutation p.S866F 0.33 tolerated(1) probably_damaging(0.999) TCGA-D3-A3C7-06 13 79189644 79189644 G A RNF219 3'UTR 0.50 TCGA-D3-A3C7-06 13 98664589 98664589 C T IPO5 Silent p.F733F 0.29 TCGA-D3-A3C7-06 13 99356685 99356685 T A SLC15A1 Missense_Mutation p.N425I 0.33 tolerated(0.06) benign(0.035) TCGA-D3-A3C7-06 14 101416231 101416231 C T SNORD114-1 RNA 0.33 TCGA-D3-A3C7-06 14 101419726 101419726 G A SNORD114-3 RNA 0.35 TCGA-D3-A3C7-06 14 101512287 101512287 C T MIR381 RNA 0.24 TCGA-D3-A3C7-06 14 103173840 103173840 C T RCOR1 Silent p.I217I 0.30 TCGA-D3-A3C7-06 14 103187353 103187353 A G RCOR1 Missense_Mutation p.I355V 0.45 tolerated(0.54) benign(0.008) TCGA-D3-A3C7-06 14 104571006 104571006 G A ASPG Silent p.E328E 0.32 TCGA-D3-A3C7-06 14 105412741 105412741 G A AHNAK2 Missense_Mutation p.S3016F 0.35 possibly_damaging(0.899) TCGA-D3-A3C7-06 14 105718852 105718852 G A BRF1 Missense_Mutation p.P179L 0.42 deleterious(0) benign(0.384) TCGA-D3-A3C7-06 14 105718853 105718853 G A BRF1 Missense_Mutation p.P179S 0.42 deleterious(0.01) possibly_damaging(0.887) TCGA-D3-A3C7-06 14 106329413 106329413 G A IGHJ6 Missense_Mutation p.S19F 0.24 benign(0.001) TCGA-D3-A3C7-06 14 20482421 20482421 C T OR4K14 Silent p.%3D 0.31 TCGA-D3-A3C7-06 14 20856088 20856088 G A TEP1 Missense_Mutation p.P887L 0.31 deleterious(0.01) benign(0.025) TCGA-D3-A3C7-06 14 21623432 21623432 G A OR5AU1 Silent p.F251F 0.42 TCGA-D3-A3C7-06 14 22356464 22356464 C T TRAV12-2 Missense_Mutation p.S41F 0.32 tolerated(0.7) benign(0.033) TCGA-D3-A3C7-06 14 23512187 23512187 C T PSMB11 Silent p.L251L 0.30 TCGA-D3-A3C7-06 14 23518845 23518845 C T CDH24 Missense_Mutation p.D568N 0.45 deleterious(0.04) probably_damaging(0.917) TCGA-D3-A3C7-06 14 23518846 23518846 C T CDH24 Silent p.Q567Q 0.45 TCGA-D3-A3C7-06 14 23600687 23600687 G A SLC7A8 Missense_Mutation p.P366S 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 14 23635597 23635597 T C SLC7A8 Missense_Mutation p.K102E 0.32 deleterious(0.01) possibly_damaging(0.549) TCGA-D3-A3C7-06 14 23865960 23865960 C T MYH6 Silent p.E745E 0.41 TCGA-D3-A3C7-06 14 24034933 24034933 G A AP1G2 Intron 0.21 TCGA-D3-A3C7-06 14 24710294 24710294 G A TINF2 Missense_Mutation p.P179L 0.36 deleterious(0) possibly_damaging(0.851) TCGA-D3-A3C7-06 14 38061585 38061585 T C FOXA1 Missense_Mutation p.N135S 0.44 tolerated(0.38) benign(0.03) TCGA-D3-A3C7-06 14 39536465 39536465 G A SEC23A Missense_Mutation p.S380F 0.26 deleterious(0.01) benign(0.383) TCGA-D3-A3C7-06 14 39717188 39717188 C T MIA2 Silent p.F470F 0.40 TCGA-D3-A3C7-06 14 55310756 55310756 G A GCH1 Silent p.F244F 0.29 TCGA-D3-A3C7-06 14 62205038 62205038 C A HIF1A Missense_Mutation p.Q519K 0.35 tolerated(0.97) benign(0.109) TCGA-D3-A3C7-06 14 62462942 62462942 G A SYT16 Missense_Mutation p.D69N 0.36 tolerated_low_confidence(0.09) benign(0.006) TCGA-D3-A3C7-06 14 64700103 64700103 C T ESR2 Intron 0.43 TCGA-D3-A3C7-06 14 65259726 65259726 G A SPTB Silent p.V885V 0.29 TCGA-D3-A3C7-06 14 68251080 68251080 G A ZFYVE26 Silent p.L1199L 0.33 TCGA-D3-A3C7-06 14 69522018 69522018 G A DCAF5 Missense_Mutation p.S462L 0.37 deleterious(0) benign(0.148) TCGA-D3-A3C7-06 14 73720524 73720524 C T PAPLN Missense_Mutation p.S359F 0.32 deleterious(0) possibly_damaging(0.459) TCGA-D3-A3C7-06 14 81371267 81371267 G A CEP128 Missense_Mutation p.H124Y 0.38 deleterious(0.01) benign(0.169) TCGA-D3-A3C7-06 14 89206850 89206850 G A EML5 Nonsense_Mutation p.Q198* 0.36 TCGA-D3-A3C7-06 14 89878430 89878430 G A FOXN3 Missense_Mutation p.P131S 0.25 deleterious(0.04) benign(0.364) TCGA-D3-A3C7-06 14 90509426 90509426 T G TDP1 Missense_Mutation p.I589R 0.38 deleterious(0.02) possibly_damaging(0.455) TCGA-D3-A3C7-06 14 92053616 92053616 G A CATSPERB Missense_Mutation p.S1021F 0.52 deleterious(0) probably_damaging(0.973) TCGA-D3-A3C7-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.46 TCGA-D3-A3C7-06 14 92958550 92958550 C T SLC24A4 Missense_Mutation p.S561F 0.28 deleterious(0) probably_damaging(0.987) TCGA-D3-A3C7-06 14 94526450 94526450 A G DDX24 Missense_Mutation p.L636P 0.37 tolerated(0.28) probably_damaging(0.966) TCGA-D3-A3C7-06 14 94964174 94964174 C T SERPINA12 Silent p.G187G 0.26 TCGA-D3-A3C7-06 14 95053711 95053711 C T SERPINA5 Silent p.F4F 0.31 TCGA-D3-A3C7-06 14 95903214 95903214 G A SYNE3 Silent p.I827I 0.34 TCGA-D3-A3C7-06 15 102358668 102358668 C T OR4F15 Silent p.S93S 0.36 TCGA-D3-A3C7-06 15 25455073 25455073 G A SNORD115-22 RNA 0.35 TCGA-D3-A3C7-06 15 27159995 27159995 G A GABRA5 Silent p.P181P 0.28 TCGA-D3-A3C7-06 15 33840366 33840366 G A RYR3 Missense_Mutation p.R259Q 0.21 benign(0.36) TCGA-D3-A3C7-06 15 33855110 33855110 G A RYR3 Missense_Mutation p.G349R 0.36 probably_damaging(0.995) TCGA-D3-A3C7-06 15 34295320 34295320 G A AVEN Nonsense_Mutation p.R120* 0.36 TCGA-D3-A3C7-06 15 40099246 40099246 G A GPR176 Missense_Mutation p.S129F 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A3C7-06 15 40300312 40300312 C G EIF2AK4 Silent p.V1164V 0.36 TCGA-D3-A3C7-06 15 40300332 40300332 T C EIF2AK4 Missense_Mutation p.F1171S 0.35 tolerated(0.27) benign(0.001) TCGA-D3-A3C7-06 15 40657409 40657409 C T DISP2 Missense_Mutation p.R261W 0.35 deleterious(0.01) benign(0.249) TCGA-D3-A3C7-06 15 40657471 40657471 C T DISP2 Silent p.P281P 0.27 TCGA-D3-A3C7-06 15 41854889 41854889 C T TYRO3 Missense_Mutation p.P185S 0.33 tolerated(0.74) benign(0.004) TCGA-D3-A3C7-06 15 42059489 42059489 C T MGA 3'UTR 0.36 TCGA-D3-A3C7-06 15 42298225 42298225 C T PLA2G4E Missense_Mutation p.R163Q 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A3C7-06 15 42363686 42363686 C T PLA2G4D Missense_Mutation p.G546E 0.36 tolerated(1) benign(0.012) TCGA-D3-A3C7-06 15 43940225 43940225 A G CATSPER2 Missense_Mutation p.L12P 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 15 44062493 44062493 G A PDIA3 Missense_Mutation p.A438T 0.28 tolerated(0.06) probably_damaging(0.991) TCGA-D3-A3C7-06 15 49176514 49176514 A G SHC4 Silent p.F257F 0.34 TCGA-D3-A3C7-06 15 50897179 50897179 A G TRPM7 Missense_Mutation p.F958L 0.31 tolerated(0.65) possibly_damaging(0.556) TCGA-D3-A3C7-06 15 51350308 51350308 A T TNFAIP8L3 Missense_Mutation p.F217I 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 15 51696536 51696536 G A GLDN Missense_Mutation p.R414Q 0.41 tolerated(0.1) probably_damaging(0.995) TCGA-D3-A3C7-06 15 57910263 57910263 G A MYZAP Silent p.R65R 0.34 TCGA-D3-A3C7-06 15 62205598 62205598 G A VPS13C Missense_Mutation p.S2821L 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 15 62214859 62214859 G A VPS13C Missense_Mutation p.L2238F 0.32 deleterious(0) probably_damaging(0.979) TCGA-D3-A3C7-06 15 63058542 63058542 C T TLN2 Missense_Mutation p.S1706L 0.35 tolerated(0.22) benign(0.01) TCGA-D3-A3C7-06 15 72642726 72642726 G A HEXA Intron 0.55 TCGA-D3-A3C7-06 15 72837239 72837241 GAT - ARIH1 In_Frame_Del p.M175del 0.24 TCGA-D3-A3C7-06 15 74636166 74636166 C T CYP11A1 Missense_Mutation p.D265N 0.41 tolerated(0.06) benign(0.336) TCGA-D3-A3C7-06 15 75047291 75047291 C T CYP1A2 Silent p.F471F 0.38 TCGA-D3-A3C7-06 15 77474242 77474242 T C PEAK1 Silent p.E9E 0.44 TCGA-D3-A3C7-06 15 78921508 78921508 G A CHRNB4 Missense_Mutation p.S380F 0.44 tolerated(0.1) possibly_damaging(0.764) TCGA-D3-A3C7-06 15 79755596 79755596 C T KIAA1024 Missense_Mutation p.S829F 0.45 tolerated(0.07) possibly_damaging(0.794) TCGA-D3-A3C7-06 15 81650587 81650587 C T TMC3 Missense_Mutation p.E216K 0.40 tolerated(0.2) benign(0.269) TCGA-D3-A3C7-06 15 82456243 82456243 G A EFTUD1 Silent p.N611N 0.29 TCGA-D3-A3C7-06 15 83725214 83725214 G A BTBD1 Missense_Mutation p.A162V 0.43 tolerated(0.16) possibly_damaging(0.652) TCGA-D3-A3C7-06 15 90984750 90984750 T C IQGAP1 Missense_Mutation p.V221A 0.43 deleterious(0) benign(0.313) TCGA-D3-A3C7-06 15 94983482 94983482 C T MCTP2 Silent p.F721F 0.38 TCGA-D3-A3C7-06 15 94986178 94986178 G A MCTP2 Missense_Mutation p.E747K 0.26 tolerated(0.52) benign(0.137) TCGA-D3-A3C7-06 15 99892588 99892588 C T LRRC28 Nonsense_Mutation p.R203* 0.45 TCGA-D3-A3C7-06 16 10032408 10032408 C T GRIN2A Missense_Mutation p.D139N 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 16 11219974 11219974 C T CLEC16A Missense_Mutation p.S871F 0.34 deleterious(0.02) possibly_damaging(0.786) TCGA-D3-A3C7-06 16 1291284 1291284 C T TPSAB1 Silent p.I64I 0.25 TCGA-D3-A3C7-06 16 15724341 15724341 C T KIAA0430 Missense_Mutation p.E458K 0.52 deleterious(0) possibly_damaging(0.871) TCGA-D3-A3C7-06 16 16284138 16284138 C T ABCC6 Nonsense_Mutation p.W506* 0.42 TCGA-D3-A3C7-06 16 19726093 19726093 G A KNOP1 Missense_Mutation p.P89S 0.32 tolerated(0.41) benign(0) TCGA-D3-A3C7-06 16 20952789 20952789 A T DNAH3 Nonsense_Mutation p.L3863* 0.43 TCGA-D3-A3C7-06 16 2345602 2345602 C T ABCA3 Silent p.E801E 0.38 TCGA-D3-A3C7-06 16 23672571 23672571 C T DCTN5 Missense_Mutation p.S106F 0.42 deleterious(0) probably_damaging(0.961) TCGA-D3-A3C7-06 16 23718180 23718180 G A ERN2 Missense_Mutation p.R176W 0.49 deleterious(0) probably_damaging(0.986) TCGA-D3-A3C7-06 16 24185843 24185843 T C PRKCB Missense_Mutation p.Y446H 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 16 26147380 26147380 C T HS3ST4 Silent p.F394F 0.54 TCGA-D3-A3C7-06 16 2812815 2812815 C T SRRM2 Silent p.L762L 0.32 TCGA-D3-A3C7-06 16 28146632 28146632 G A XPO6 Silent p.L450L 0.32 TCGA-D3-A3C7-06 16 28509438 28509438 C T APOBR Missense_Mutation p.P998S 0.21 tolerated(0.2) unknown(0) TCGA-D3-A3C7-06 16 28509439 28509439 C T APOBR Missense_Mutation p.P998L 0.22 deleterious(0.02) unknown(0) TCGA-D3-A3C7-06 16 29115586 29115586 C T CTB-134H23.3 RNA 0.30 TCGA-D3-A3C7-06 16 30392719 30392719 C G SEPT1 Missense_Mutation p.K132N 0.37 possibly_damaging(0.624) TCGA-D3-A3C7-06 16 30750282 30750282 C T SRCAP Missense_Mutation p.P2974L 0.57 unknown(0) TCGA-D3-A3C7-06 16 30777523 30777523 C T RNF40 Silent p.L345L 0.30 TCGA-D3-A3C7-06 16 30939897 30939897 C T FBXL19 Missense_Mutation p.P266L 0.42 tolerated(0.3) benign(0.001) TCGA-D3-A3C7-06 16 31202393 31202393 G A FUS Silent p.G501G 0.27 TCGA-D3-A3C7-06 16 31424248 31424248 G A ITGAD Missense_Mutation p.M599I 0.47 tolerated(0.12) benign(0.005) TCGA-D3-A3C7-06 16 46774025 46774025 G A MYLK3 Missense_Mutation p.P171L 0.43 deleterious(0.01) benign(0.263) TCGA-D3-A3C7-06 16 47162260 47162260 G A NETO2 Nonsense_Mutation p.R153* 0.39 TCGA-D3-A3C7-06 16 48142409 48142409 G A ABCC12 Silent p.S771S 0.46 TCGA-D3-A3C7-06 16 49430331 49430331 C T C16orf78 Intron 0.37 TCGA-D3-A3C7-06 16 50136199 50136199 C T HEATR3 Silent p.T591T 0.30 TCGA-D3-A3C7-06 16 51175771 51175771 C T SALL1 Missense_Mutation p.R121K 0.26 tolerated(1) benign(0.002) TCGA-D3-A3C7-06 16 55584910 55584910 G T LPCAT2 Missense_Mutation p.A371S 0.37 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C7-06 16 56866247 56866247 C T NUP93 Missense_Mutation p.P431L 0.30 tolerated(0.22) benign(0.049) TCGA-D3-A3C7-06 16 57295862 57295862 G A PLLP Missense_Mutation p.L86F 0.41 tolerated(0.08) benign(0.048) TCGA-D3-A3C7-06 16 57562890 57562890 C T CCDC102A Missense_Mutation p.G67D 0.60 deleterious(0.03) probably_damaging(0.92) TCGA-D3-A3C7-06 16 58319856 58319856 C T PRSS54 Nonsense_Mutation p.W169* 0.42 TCGA-D3-A3C7-06 16 58538325 58538325 G A NDRG4 Missense_Mutation p.G156E 0.44 deleterious(0.04) possibly_damaging(0.755) TCGA-D3-A3C7-06 16 58557398 58557398 G A CNOT1 Missense_Mutation p.L2265F 0.40 deleterious(0) probably_damaging(0.966) TCGA-D3-A3C7-06 16 66948290 66948290 C T CDH16 Silent p.L203L 0.33 TCGA-D3-A3C7-06 16 67576106 67576106 C T FAM65A Silent p.L493L 0.34 TCGA-D3-A3C7-06 16 69951744 69951744 C T WWP2 Silent p.L379L 0.24 TCGA-D3-A3C7-06 16 71509231 71509231 G A ZNF19 Missense_Mutation p.H407Y 0.34 deleterious(0.02) benign(0.03) TCGA-D3-A3C7-06 16 72827786 72827786 C T ZFHX3 Missense_Mutation p.G2932E 0.46 unknown(0) TCGA-D3-A3C7-06 16 77775602 77775602 C T NUDT7 Missense_Mutation p.H158Y 0.36 tolerated(1) benign(0.005) TCGA-D3-A3C7-06 16 815762 815762 C T MSLN Silent p.L289L 0.34 TCGA-D3-A3C7-06 16 815763 815763 C T MSLN Missense_Mutation p.R290W 0.36 tolerated(0.19) benign(0.022) TCGA-D3-A3C7-06 16 82033683 82033683 T C SDR42E1 Missense_Mutation p.D72G 0.49 tolerated(0.17) benign(0.006) TCGA-D3-A3C7-06 16 89789072 89789072 C T ZNF276 Silent p.L113L 0.33 TCGA-D3-A3C7-06 16 9857332 9857332 G A GRIN2A Missense_Mutation p.L1357F 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A3C7-06 17 10399579 10399579 C T MYH1 Silent p.R1648R 0.32 TCGA-D3-A3C7-06 17 11666769 11666769 C T DNAH9 Silent p.I2336I 0.35 TCGA-D3-A3C7-06 17 15884382 15884382 G A ZSWIM7 Missense_Mutation p.S93L 0.46 deleterious(0) possibly_damaging(0.899) TCGA-D3-A3C7-06 17 1787103 1787103 C T RPA1 Intron 0.35 TCGA-D3-A3C7-06 17 18022910 18022910 C T MYO15A Missense_Mutation p.P266S 0.31 benign(0.348) TCGA-D3-A3C7-06 17 18022911 18022911 C T MYO15A Missense_Mutation p.P266L 0.32 benign(0.065) TCGA-D3-A3C7-06 17 20224893 20224893 C T AC004702.2 Intron 0.31 TCGA-D3-A3C7-06 17 20363713 20363713 C T LGALS9B Missense_Mutation p.G28E 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 17 26861982 26861982 C T FOXN1 Missense_Mutation p.P465S 0.21 tolerated(0.26) benign(0.003) TCGA-D3-A3C7-06 17 26861983 26861983 C T FOXN1 Missense_Mutation p.P465L 0.22 tolerated(0.16) benign(0.002) TCGA-D3-A3C7-06 17 27011697 27011697 C T SUPT6H Nonsense_Mutation p.Q775* 0.35 TCGA-D3-A3C7-06 17 27024747 27024747 G A SUPT6H Missense_Mutation p.R1440H 0.08 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A3C7-06 17 29220499 29220499 G A ATAD5 Missense_Mutation p.S1543N 0.38 tolerated(0.38) benign(0.005) TCGA-D3-A3C7-06 17 29665142 29665142 C T NF1 Silent p.I2268I 0.36 TCGA-D3-A3C7-06 17 3030567 3030567 G A OR1G1 Silent p.S93S 0.36 TCGA-D3-A3C7-06 17 31039087 31039087 G A MYO1D Silent p.F680F 0.48 TCGA-D3-A3C7-06 17 3144278 3144278 C T OR1D4 RNA 0.19 TCGA-D3-A3C7-06 17 33513632 33513632 T C UNC45B 3'UTR 0.36 TCGA-D3-A3C7-06 17 34245308 34245308 G A RDM1 3'UTR 0.27 TCGA-D3-A3C7-06 17 36099441 36099441 C T HNF1B Silent p.E178E 0.42 TCGA-D3-A3C7-06 17 36104883 36104883 G A HNF1B 5'UTR 0.39 TCGA-D3-A3C7-06 17 3828614 3828614 G A ATP2A3 3'UTR 0.26 TCGA-D3-A3C7-06 17 39165029 39165029 G A KRTAP3-1 3'UTR 0.21 TCGA-D3-A3C7-06 17 39672221 39672221 C T KRT15 Missense_Mutation p.M314I 0.27 tolerated(0.07) benign(0.034) TCGA-D3-A3C7-06 17 40865335 40865335 G A EZH1 Missense_Mutation p.H366Y 0.33 tolerated(0.22) benign(0.09) TCGA-D3-A3C7-06 17 41847063 41847063 G A DUSP3 Missense_Mutation p.R158C 0.26 deleterious(0.03) probably_damaging(1) TCGA-D3-A3C7-06 17 42934475 42934475 G A EFTUD2 Silent p.S671S 0.44 TCGA-D3-A3C7-06 17 42936451 42936451 G A EFTUD2 Silent p.I653I 0.34 TCGA-D3-A3C7-06 17 43246334 43246334 C T HEXIM2 Intron 0.35 TCGA-D3-A3C7-06 17 45750523 45750523 C T KPNB1 Nonsense_Mutation p.Q563* 0.40 TCGA-D3-A3C7-06 17 45885931 45885931 T C OSBPL7 Missense_Mutation p.N798S 0.41 tolerated(0.12) benign(0.009) TCGA-D3-A3C7-06 17 4621234 4621234 C T ARRB2 Silent p.P200P 0.28 TCGA-D3-A3C7-06 17 46607022 46607022 C T HOXB1 Missense_Mutation p.E265K 0.37 tolerated(0.27) benign(0) TCGA-D3-A3C7-06 17 46691682 46691682 G A HOXB8 Missense_Mutation p.P129S 0.29 tolerated(0.72) benign(0.015) TCGA-D3-A3C7-06 17 47044610 47044610 C T GIP 5'UTR 0.34 TCGA-D3-A3C7-06 17 4804268 4804268 T A C17orf107 3'UTR 0.41 TCGA-D3-A3C7-06 17 48696108 48696108 C T CACNA1G Silent p.F1840F 0.33 TCGA-D3-A3C7-06 17 48701370 48701370 C T CACNA1G Missense_Mutation p.R2055W 0.38 deleterious(0) possibly_damaging(0.582) TCGA-D3-A3C7-06 17 51900733 51900733 G A KIF2B Silent p.T113T 0.34 TCGA-D3-A3C7-06 17 5212019 5212019 A T RABEP1 Missense_Mutation p.E22V 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 17 53798413 53798413 T C TMEM100 Missense_Mutation p.K7E 0.39 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-D3-A3C7-06 17 54428267 54428267 C T ANKFN1 Missense_Mutation p.S113F 0.39 deleterious(0.04) possibly_damaging(0.854) TCGA-D3-A3C7-06 17 56664997 56664997 G A TEX14 Silent p.I917I 0.37 TCGA-D3-A3C7-06 17 56692624 56692624 C T TEX14 Missense_Mutation p.D290N 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 17 58524995 58524995 C A APPBP2 Nonsense_Mutation p.E569* 0.39 TCGA-D3-A3C7-06 17 5998538 5998538 C T WSCD1 Nonsense_Mutation p.Q282* 0.38 TCGA-D3-A3C7-06 17 61768530 61768530 C T MAP3K3 Silent p.Y458Y 0.33 TCGA-D3-A3C7-06 17 62137861 62137861 G A ERN1 Missense_Mutation p.P392S 0.35 tolerated(0.09) benign(0.282) TCGA-D3-A3C7-06 17 65026931 65026931 C T CACNG4 Silent p.I265I 0.43 TCGA-D3-A3C7-06 17 66533797 66533797 C T FAM20A Missense_Mutation p.E483K 0.47 tolerated(0.47) benign(0.023) TCGA-D3-A3C7-06 17 708444 708444 G A NXN Silent p.I288I 0.28 TCGA-D3-A3C7-06 17 72305515 72305515 C T DNAI2 Silent p.T445T 0.32 TCGA-D3-A3C7-06 17 72832536 72832536 C T TMEM104 Missense_Mutation p.P401S 0.39 deleterious(0) probably_damaging(0.954) TCGA-D3-A3C7-06 17 72832537 72832537 C T TMEM104 Missense_Mutation p.P401L 0.37 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C7-06 17 7330098 7330098 C T C17orf74 Missense_Mutation p.S263F 0.48 deleterious(0) probably_damaging(0.919) TCGA-D3-A3C7-06 17 74136356 74136356 C T FOXJ1 Missense_Mutation p.E41K 0.35 deleterious(0.04) benign(0.161) TCGA-D3-A3C7-06 17 74942495 74942495 G A MGAT5B Missense_Mutation p.G638E 0.28 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C7-06 17 76449483 76449483 C T DNAH17 Missense_Mutation p.E3477K 0.33 probably_damaging(0.988) TCGA-D3-A3C7-06 17 76482527 76482527 G A DNAH17 Missense_Mutation p.L2280F 0.49 possibly_damaging(0.648) TCGA-D3-A3C7-06 17 7668873 7668873 C T DNAH2 Silent p.F1167F 0.32 TCGA-D3-A3C7-06 17 78268774 78268774 G T RNF213 Missense_Mutation p.W576L 0.22 probably_damaging(0.997) TCGA-D3-A3C7-06 17 7827774 7827774 G A KCNAB3 Silent p.L224L 0.33 TCGA-D3-A3C7-06 17 7979013 7979013 G A ALOX12B Silent p.T518T 0.33 TCGA-D3-A3C7-06 17 7989457 7989457 A T ALOX12B Missense_Mutation p.F77I 0.29 deleterious(0.03) benign(0.285) TCGA-D3-A3C7-06 17 80382276 80382276 C T HEXDC Missense_Mutation p.P31S 0.38 deleterious(0.03) benign(0.316) TCGA-D3-A3C7-06 17 80790255 80790255 T C ZNF750 Missense_Mutation p.K26E 0.31 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 17 8159960 8159960 C T PFAS Missense_Mutation p.P314S 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 17 8167625 8167625 C T PFAS Silent p.L629L 0.41 TCGA-D3-A3C7-06 17 8169316 8169316 C T PFAS Silent p.I894I 0.43 TCGA-D3-A3C7-06 17 8644940 8644940 C T CCDC42 Missense_Mutation p.R115Q 0.43 deleterious(0.02) benign(0.02) TCGA-D3-A3C7-06 17 914039 914039 C T ABR Silent p.K722K 0.33 TCGA-D3-A3C7-06 17 97003 97003 C T RPH3AL Missense_Mutation p.R171Q 0.31 tolerated(0.22) benign(0.007) TCGA-D3-A3C7-06 18 12699056 12699056 G A CEP76 Missense_Mutation p.R148C 0.67 deleterious(0.01) benign(0.067) TCGA-D3-A3C7-06 18 21501454 21501454 G A LAMA3 Nonsense_Mutation p.W2694* 0.32 TCGA-D3-A3C7-06 18 24496402 24496402 C T CHST9 Missense_Mutation p.G385S 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C7-06 18 28728530 28728530 C T DSC1 Missense_Mutation p.D235N 0.41 deleterious(0) possibly_damaging(0.798) TCGA-D3-A3C7-06 18 29039874 29039874 C T DSG3 Missense_Mutation p.A195V 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 18 29126475 29126475 G A DSG2 Silent p.Q1042Q 0.40 TCGA-D3-A3C7-06 18 30093079 30093079 C T WBP11P1 RNA 0.33 TCGA-D3-A3C7-06 18 34647216 34647216 C T KIAA1328 Missense_Mutation p.R314C 0.35 tolerated(0.14) benign(0.001) TCGA-D3-A3C7-06 18 44560836 44560836 G A TCEB3B Missense_Mutation p.S267F 0.36 tolerated(0.37) benign(0) TCGA-D3-A3C7-06 18 44561311 44561311 C T TCEB3B Missense_Mutation p.A109T 0.35 tolerated(0.58) benign(0.165) TCGA-D3-A3C7-06 18 55024677 55024677 G A ST8SIA3 Missense_Mutation p.G279E 0.43 probably_damaging(1) TCGA-D3-A3C7-06 18 56985680 56985680 C T CPLX4 Missense_Mutation p.M5I 0.33 tolerated(0.37) benign(0) TCGA-D3-A3C7-06 18 56998314 56998314 G A LMAN1 3'UTR 0.37 TCGA-D3-A3C7-06 18 59170282 59170282 G A CDH20 Missense_Mutation p.G253E 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 18 59895551 59895551 C T KIAA1468 Missense_Mutation p.L390F 0.31 tolerated(0.05) benign(0.299) TCGA-D3-A3C7-06 18 76754644 76754644 G A SALL3 Missense_Mutation p.D885N 0.42 deleterious(0) probably_damaging(0.981) TCGA-D3-A3C7-06 18 9255150 9255150 C T ANKRD12 Missense_Mutation p.H629Y 0.68 tolerated_low_confidence(0.31) benign(0.206) TCGA-D3-A3C7-06 19 10363306 10363306 C T MRPL4 Silent p.S68S 0.46 TCGA-D3-A3C7-06 19 12256086 12256086 G A ZNF625 3'UTR 0.30 TCGA-D3-A3C7-06 19 12256087 12256087 G A ZNF625 3'UTR 0.30 TCGA-D3-A3C7-06 19 13423587 13423587 C T CACNA1A Missense_Mutation p.E522K 0.19 possibly_damaging(0.801) TCGA-D3-A3C7-06 19 14006280 14006280 C T C19orf57 Silent p.L37L 0.36 TCGA-D3-A3C7-06 19 14578389 14578389 C T PKN1 Nonsense_Mutation p.Q588* 0.27 TCGA-D3-A3C7-06 19 14752279 14752279 G A EMR3 Silent p.F400F 0.28 TCGA-D3-A3C7-06 19 15198637 15198637 C G OR1I1 Missense_Mutation p.T254S 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A3C7-06 19 15739586 15739586 C T CYP4F8 RNA 0.28 TCGA-D3-A3C7-06 19 15839424 15839424 A T OR10H2 Missense_Mutation p.N191Y 0.38 deleterious(0.01) benign(0.148) TCGA-D3-A3C7-06 19 15852274 15852274 C T OR10H3 Silent p.L24L 0.30 TCGA-D3-A3C7-06 19 16338374 16338374 C T AP1M1 Missense_Mutation p.S242F 0.37 deleterious(0.02) possibly_damaging(0.908) TCGA-D3-A3C7-06 19 17351572 17351572 G A NR2F6 Missense_Mutation p.S94F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 19 17389702 17389702 A - BABAM1 Frame_Shift_Del p.K279Sfs*90 0.09 TCGA-D3-A3C7-06 19 18233516 18233516 C T MAST3 Silent p.L89L 0.33 TCGA-D3-A3C7-06 19 19427238 19427238 G A SUGP1 Missense_Mutation p.P67S 0.38 tolerated(0.53) benign(0.028) TCGA-D3-A3C7-06 19 19744700 19744700 G A GMIP Missense_Mutation p.S795F 0.36 deleterious(0.04) benign(0.044) TCGA-D3-A3C7-06 19 20229372 20229372 G A ZNF90 Missense_Mutation p.G337R 0.29 tolerated(0.06) possibly_damaging(0.891) TCGA-D3-A3C7-06 19 20844318 20844318 C T ZNF626 5'UTR 0.41 TCGA-D3-A3C7-06 19 21476864 21476864 G A ZNF708 Missense_Mutation p.H302Y 0.35 deleterious(0.01) possibly_damaging(0.469) TCGA-D3-A3C7-06 19 22364141 22364141 T C ZNF676 Silent p.S126S 0.41 TCGA-D3-A3C7-06 19 22939118 22939118 T A ZNF99 3'Flank 0.68 TCGA-D3-A3C7-06 19 22940851 22940851 G A ZNF99 Silent p.P620P 0.29 TCGA-D3-A3C7-06 19 22941413 22941413 G A ZNF99 Missense_Mutation p.A433V 0.36 tolerated(0.1) possibly_damaging(0.543) TCGA-D3-A3C7-06 19 23941560 23941560 T G ZNF681 5'UTR 0.32 TCGA-D3-A3C7-06 19 24310482 24310482 C T ZNF254 Silent p.I560I 0.33 TCGA-D3-A3C7-06 19 2853171 2853171 T G ZNF555 Missense_Mutation p.C370G 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 19 287583 287583 G A PPAP2C Missense_Mutation p.P146S 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 19 34791262 34791262 C T KIAA0355 5'UTR 0.38 TCGA-D3-A3C7-06 19 34843722 34843722 C T KIAA0355 Silent p.D1025D 0.44 TCGA-D3-A3C7-06 19 35850524 35850524 C T FFAR3 Silent p.S244S 0.27 TCGA-D3-A3C7-06 19 35862804 35862804 C T GPR42 Silent p.L181L 0.56 TCGA-D3-A3C7-06 19 36004094 36004094 A G DMKN Missense_Mutation p.L95S 0.23 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C7-06 19 36123881 36123881 C T RBM42 Silent p.V162V 0.45 TCGA-D3-A3C7-06 19 36290890 36290890 T C PRODH2 3'Flank 0.38 TCGA-D3-A3C7-06 19 36347965 36347965 G A KIRREL2 5'UTR 0.38 TCGA-D3-A3C7-06 19 36673547 36673547 G A ZNF565 Missense_Mutation p.H441Y 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A3C7-06 19 36728168 36728168 G A ZNF146 Missense_Mutation p.A276T 0.31 tolerated(0.08) possibly_damaging(0.902) TCGA-D3-A3C7-06 19 38027988 38027988 G A ZNF793 Missense_Mutation p.G143E 0.22 tolerated(0.05) possibly_damaging(0.634) TCGA-D3-A3C7-06 19 38229711 38229711 C T ZNF573 Silent p.G560G 0.48 TCGA-D3-A3C7-06 19 38795267 38795267 G A C19orf33 Missense_Mutation p.G48R 0.44 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-D3-A3C7-06 19 38966067 38966067 G A RYR1 Missense_Mutation p.E1424K 0.27 benign(0.099) TCGA-D3-A3C7-06 19 39008218 39008218 C T RYR1 Missense_Mutation p.P3302L 0.40 benign(0.007) TCGA-D3-A3C7-06 19 3905499 3905499 C T ATCAY Silent p.I68I 0.59 TCGA-D3-A3C7-06 19 39232476 39232476 G A CAPN12 Silent p.F167F 0.33 TCGA-D3-A3C7-06 19 39362287 39362287 C T RINL Missense_Mutation p.D151N 0.20 tolerated(0.07) possibly_damaging(0.649) TCGA-D3-A3C7-06 19 39924197 39924197 G A RPS16 Missense_Mutation p.S87F 0.43 deleterious(0.03) benign(0.12) TCGA-D3-A3C7-06 19 41703762 41703762 G A CYP2S1 Missense_Mutation p.G141E 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 19 42311154 42311154 C T CEACAM3 Intron 0.37 TCGA-D3-A3C7-06 19 4288268 4288268 G A SHD Missense_Mutation p.D249N 0.34 deleterious(0.02) possibly_damaging(0.72) TCGA-D3-A3C7-06 19 43234077 43234077 G A PSG3 Missense_Mutation p.P281S 0.26 tolerated(0.12) possibly_damaging(0.794) TCGA-D3-A3C7-06 19 43522979 43522979 C T PSG11 Missense_Mutation p.E218K 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 19 44610559 44610559 C T ZNF224 Silent p.I82I 0.23 TCGA-D3-A3C7-06 19 44610560 44610560 C A ZNF224 Missense_Mutation p.Q83K 0.24 tolerated(0.2) benign(0.265) TCGA-D3-A3C7-06 19 45211244 45211244 A T CEACAM16 Missense_Mutation p.Y351F 0.19 tolerated(0.18) probably_damaging(0.998) TCGA-D3-A3C7-06 19 45448482 45448482 C T APOC4 Missense_Mutation p.L102F 0.41 tolerated(0.5) possibly_damaging(0.696) TCGA-D3-A3C7-06 19 45515487 45515487 C T RELB Missense_Mutation p.L153F 0.34 tolerated(0.16) possibly_damaging(0.79) TCGA-D3-A3C7-06 19 47124806 47124806 C T PTGIR Missense_Mutation p.A298T 0.45 tolerated(0.1) benign(0.008) TCGA-D3-A3C7-06 19 47823574 47823574 G C C5AR1 Missense_Mutation p.E180D 0.36 tolerated(0.95) benign(0.039) TCGA-D3-A3C7-06 19 4792820 4792820 C T FEM1A Silent p.A318A 0.35 TCGA-D3-A3C7-06 19 48523119 48523119 T A ELSPBP1 Missense_Mutation p.F167I 0.36 tolerated(0.12) benign(0.007) TCGA-D3-A3C7-06 19 49547354 49547354 C T CGB5 5'UTR 0.24 TCGA-D3-A3C7-06 19 49671865 49671865 T G TRPM4 Missense_Mutation p.F223C 0.28 tolerated(0.52) benign(0.002) TCGA-D3-A3C7-06 19 50550097 50550097 A G ZNF473 Silent p.A799A 0.28 TCGA-D3-A3C7-06 19 51022446 51022446 G A LRRC4B Missense_Mutation p.S175F 0.38 deleterious(0) probably_damaging(0.925) TCGA-D3-A3C7-06 19 51274719 51274719 G A GPR32 Missense_Mutation p.E288K 0.28 tolerated(0.86) benign(0.006) TCGA-D3-A3C7-06 19 51358246 51358246 T G KLK3 Missense_Mutation p.V12G 0.25 tolerated(0.08) benign(0) TCGA-D3-A3C7-06 19 51918465 51918465 G A SIGLEC10 Nonsense_Mutation p.Q434* 0.50 TCGA-D3-A3C7-06 19 52519474 52519474 T C ZNF614 Silent p.E459E 0.34 TCGA-D3-A3C7-06 19 52869701 52869701 C T ZNF610 Missense_Mutation p.S357L 0.29 deleterious(0.02) benign(0.15) TCGA-D3-A3C7-06 19 52869803 52869803 T A ZNF610 Missense_Mutation p.L391H 0.34 tolerated(0.26) benign(0.065) TCGA-D3-A3C7-06 19 53015010 53015010 A T ZNF578 Missense_Mutation p.E459V 0.43 tolerated(0.16) benign(0.002) TCGA-D3-A3C7-06 19 53454809 53454809 G A ZNF816 Silent p.F73F 0.39 TCGA-D3-A3C7-06 19 53612696 53612696 G A ZNF415 Missense_Mutation p.S201L 0.30 tolerated(0.09) probably_damaging(0.978) TCGA-D3-A3C7-06 19 53994194 53994194 C T ZNF813 Silent p.I236I 0.35 TCGA-D3-A3C7-06 19 53994690 53994690 C T ZNF813 Missense_Mutation p.R402C 0.46 deleterious(0.03) benign(0.051) TCGA-D3-A3C7-06 19 53995275 53995275 C T ZNF813 Missense_Mutation p.H597Y 0.52 deleterious(0.01) possibly_damaging(0.622) TCGA-D3-A3C7-06 19 54191781 54191781 G A MIR1283-1 RNA 0.33 TCGA-D3-A3C7-06 19 54228779 54228779 G A MIR516B2 RNA 0.36 TCGA-D3-A3C7-06 19 54313043 54313043 C T NLRP12 Missense_Mutation p.E624K 0.33 deleterious(0.04) benign(0.164) TCGA-D3-A3C7-06 19 54395856 54395856 C T PRKCG Silent p.S260S 0.33 TCGA-D3-A3C7-06 19 54802162 54802162 C T LILRA3 Silent p.V342V 0.24 TCGA-D3-A3C7-06 19 55107840 55107840 T G LILRA1 Missense_Mutation p.F382C 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 19 55143065 55143065 G A LILRB1 Missense_Mutation p.R62K 0.41 tolerated(1) benign(0.001) TCGA-D3-A3C7-06 19 55143137 55143137 C T LILRB1 Missense_Mutation p.P86L 0.36 tolerated(0.06) benign(0.014) TCGA-D3-A3C7-06 19 55179529 55179529 A G LILRB4 3'UTR 0.27 TCGA-D3-A3C7-06 19 55773949 55773949 G A HSPBP1 3'UTR 0.30 TCGA-D3-A3C7-06 19 56249473 56249473 C T NLRP9 Missense_Mutation p.E90K 0.37 tolerated(0.29) probably_damaging(0.945) TCGA-D3-A3C7-06 19 56419288 56419288 C T NLRP13 Missense_Mutation p.D773N 0.34 tolerated(0.34) benign(0.014) TCGA-D3-A3C7-06 19 56466093 56466093 G A NLRP8 Silent p.V223V 0.32 TCGA-D3-A3C7-06 19 57085765 57085765 T C ZNF470 Silent p.G21G 0.27 TCGA-D3-A3C7-06 19 57175912 57175912 C T ZNF835 Missense_Mutation p.E219K 0.73 deleterious(0) possibly_damaging(0.792) TCGA-D3-A3C7-06 19 57328369 57328369 C T PEG3 Missense_Mutation p.E481K 0.31 tolerated(0.05) possibly_damaging(0.474) TCGA-D3-A3C7-06 19 57640096 57640096 G A USP29 Missense_Mutation p.G18E 0.41 deleterious(0.02) probably_damaging(0.916) TCGA-D3-A3C7-06 19 57648328 57648328 T A ZIM3 Missense_Mutation p.T52S 0.28 tolerated(0.25) benign(0.004) TCGA-D3-A3C7-06 19 57931998 57931998 C T ZNF17 Missense_Mutation p.H380Y 0.41 deleterious(0) probably_damaging(0.98) TCGA-D3-A3C7-06 19 57955450 57955450 C T ZNF749 Missense_Mutation p.H312Y 0.34 tolerated(0.99) possibly_damaging(0.514) TCGA-D3-A3C7-06 19 58046568 58046568 C T ZNF549 Silent p.L43L 0.34 TCGA-D3-A3C7-06 19 58578608 58578608 G A ZNF135 Silent p.R276R 0.40 TCGA-D3-A3C7-06 19 58772667 58772667 G A ZNF544 Missense_Mutation p.G232E 0.41 tolerated(0.47) benign(0.003) TCGA-D3-A3C7-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.47 deleterious(0) possibly_damaging(0.891) TCGA-D3-A3C7-06 19 614009 614009 C T HCN2 Silent p.D661D 0.26 TCGA-D3-A3C7-06 19 6366373 6366373 C T CLPP Silent p.I220I 0.20 TCGA-D3-A3C7-06 19 6908704 6908704 C T EMR1 Missense_Mutation p.S348F 0.34 deleterious(0) possibly_damaging(0.684) TCGA-D3-A3C7-06 19 7692252 7692252 G A XAB2 Silent p.F133F 0.50 TCGA-D3-A3C7-06 19 7810954 7810954 G A CD209 Silent p.S66S 0.30 TCGA-D3-A3C7-06 19 8974080 8974080 T A MUC16 Silent p.S14197S 0.41 TCGA-D3-A3C7-06 19 9027568 9027568 G A MUC16 Silent p.T12192T 0.48 TCGA-D3-A3C7-06 19 9045944 9045944 G A MUC16 Missense_Mutation p.S11896F 0.32 benign(0.101) TCGA-D3-A3C7-06 19 9046062 9046062 C T MUC16 Missense_Mutation p.E11857K 0.37 benign(0.007) TCGA-D3-A3C7-06 19 9046254 9046254 G A MUC16 Missense_Mutation p.P11793S 0.50 benign(0.02) TCGA-D3-A3C7-06 19 9056878 9056878 G A MUC16 Missense_Mutation p.P10190S 0.46 benign(0) TCGA-D3-A3C7-06 19 9059483 9059483 G A MUC16 Silent p.S9321S 0.33 TCGA-D3-A3C7-06 19 9063850 9063850 C T MUC16 Missense_Mutation p.E7866K 0.30 unknown(0) TCGA-D3-A3C7-06 19 9072702 9072702 A G MUC16 Missense_Mutation p.V4915A 0.27 unknown(0) TCGA-D3-A3C7-06 19 9077469 9077469 C T MUC16 Missense_Mutation p.G3326E 0.37 unknown(0) TCGA-D3-A3C7-06 19 9083027 9083027 A T MUC16 Missense_Mutation p.S2930T 0.33 unknown(0) TCGA-D3-A3C7-06 19 9086190 9086190 C T MUC16 Silent p.L1875L 0.32 TCGA-D3-A3C7-06 19 9236949 9236949 C T OR7G3 Missense_Mutation p.M226I 0.33 deleterious(0.01) benign(0.001) TCGA-D3-A3C7-06 19 9269503 9269503 T G ZNF317 Missense_Mutation p.D129E 0.37 tolerated(0.8) benign(0.16) TCGA-D3-A3C7-06 19 9270855 9270855 C T ZNF317 Silent p.D178D 0.37 TCGA-D3-A3C7-06 19 9325046 9325046 G A OR7D4 Silent p.S156S 0.23 TCGA-D3-A3C7-06 1 100613780 100613780 C T TRMT13 Missense_Mutation p.S383L 0.43 tolerated(0.1) benign(0.033) TCGA-D3-A3C7-06 1 103343611 103343611 G A COL11A1 Silent p.F1795F 0.36 TCGA-D3-A3C7-06 1 103449719 103449719 C T COL11A1 Missense_Mutation p.G844E 0.37 unknown(0) TCGA-D3-A3C7-06 1 109807531 109807531 C T CELSR2 Missense_Mutation p.P1836S 0.36 deleterious(0) probably_damaging(0.992) TCGA-D3-A3C7-06 1 109816837 109816837 C T CELSR2 3'UTR 0.33 TCGA-D3-A3C7-06 1 110029688 110029688 C T ATXN7L2 Missense_Mutation p.P120S 0.36 tolerated(0.49) benign(0.019) TCGA-D3-A3C7-06 1 110116536 110116537 - TA GNAI3 Frame_Shift_Ins p.S62Ifs*11 0.25 TCGA-D3-A3C7-06 1 110950356 110950356 G A LAMTOR5 Missense_Mutation p.P45S 0.23 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-D3-A3C7-06 1 111437015 111437015 G A CD53 Missense_Mutation p.E107K 0.27 tolerated(0.43) probably_damaging(0.936) TCGA-D3-A3C7-06 1 114240271 114240271 T A PHTF1 3'UTR 0.43 TCGA-D3-A3C7-06 1 118644447 118644447 C T SPAG17 Missense_Mutation p.D184N 0.37 tolerated(0.07) possibly_damaging(0.864) TCGA-D3-A3C7-06 1 120286705 120286705 G A PHGDH 3'UTR 0.35 TCGA-D3-A3C7-06 1 120469126 120469126 G A NOTCH2 Missense_Mutation p.P1334L 0.31 deleterious(0.03) possibly_damaging(0.745) TCGA-D3-A3C7-06 1 12836088 12836088 G A PRAMEF12 Silent p.R230R 0.40 TCGA-D3-A3C7-06 1 12921097 12921097 G A PRAMEF2 Silent p.E296E 0.41 TCGA-D3-A3C7-06 1 13001107 13001107 G A PRAMEF6 Silent p.F192F 0.10 TCGA-D3-A3C7-06 1 147380300 147380300 C T GJA8 Missense_Mutation p.S73F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 1 149783859 149783859 G A HIST2H2BF Missense_Mutation p.S7F 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A3C7-06 1 150551359 150551359 A G MCL1 Silent p.V216V 0.24 TCGA-D3-A3C7-06 1 150551360 150551360 A C MCL1 Missense_Mutation p.V216G 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 1 151149261 151149261 G A VPS72 Silent p.I329I 0.34 TCGA-D3-A3C7-06 1 152059653 152059653 G A TCHHL1 Missense_Mutation p.P169S 0.38 tolerated(0.16) benign(0.14) TCGA-D3-A3C7-06 1 152129412 152129412 C T RPTN Missense_Mutation p.E55K 0.22 deleterious(0.03) probably_damaging(0.928) TCGA-D3-A3C7-06 1 152129438 152129438 T G RPTN Splice_Site p.X47_splice 0.53 TCGA-D3-A3C7-06 1 152975642 152975642 G A SPRR3 Missense_Mutation p.G49E 0.43 tolerated(0.06) probably_damaging(0.971) TCGA-D3-A3C7-06 1 153409599 153409599 C T S100A7L2 Missense_Mutation p.D92N 0.43 tolerated(0.06) possibly_damaging(0.908) TCGA-D3-A3C7-06 1 153946380 153946380 G A CREB3L4 Missense_Mutation p.V343I 0.48 tolerated(0.43) benign(0.001) TCGA-D3-A3C7-06 1 155236605 155236605 G A CLK2 Silent p.F250F 0.29 TCGA-D3-A3C7-06 1 155920998 155920998 C T ARHGEF2 Silent p.E775E 0.27 TCGA-D3-A3C7-06 1 1565078 1565078 C T MIB2 Missense_Mutation p.R990C 0.41 deleterious(0.02) possibly_damaging(0.88) TCGA-D3-A3C7-06 1 157667645 157667645 C T FCRL3 Silent p.Q121Q 0.37 TCGA-D3-A3C7-06 1 158154037 158154037 G A CD1D 3'UTR 0.35 TCGA-D3-A3C7-06 1 158262012 158262012 G A CD1C Missense_Mutation p.G156E 0.35 tolerated(0.08) benign(0.147) TCGA-D3-A3C7-06 1 158325209 158325209 C T CD1E Missense_Mutation p.P159S 0.33 deleterious(0.04) benign(0.231) TCGA-D3-A3C7-06 1 158549411 158549411 G A OR10X1 Silent p.I93I 0.29 TCGA-D3-A3C7-06 1 158622276 158622276 T A SPTA1 Missense_Mutation p.K1119M 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 159166699 159166699 G A CADM3 Nonsense_Mutation p.W301* 0.26 TCGA-D3-A3C7-06 1 159869827 159869827 C T CCDC19 Intron 0.42 TCGA-D3-A3C7-06 1 159897632 159897632 G A IGSF9 Silent p.F1092F 0.24 TCGA-D3-A3C7-06 1 160389128 160389128 C T VANGL2 Missense_Mutation p.R177C 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 1 16060315 16060315 C T PLEKHM2 Silent p.I982I 0.26 TCGA-D3-A3C7-06 1 161953983 161953983 G A OLFML2B Missense_Mutation p.R579C 0.28 deleterious(0) probably_damaging(0.988) TCGA-D3-A3C7-06 1 16256478 16256478 C T SPEN Missense_Mutation p.S1248L 0.43 probably_damaging(0.989) TCGA-D3-A3C7-06 1 16350333 16350333 G A CLCNKA Missense_Mutation p.G47R 0.39 deleterious(0.03) benign(0.242) TCGA-D3-A3C7-06 1 165175136 165175136 G A LMX1A Missense_Mutation p.P318L 0.46 deleterious(0) probably_damaging(0.91) TCGA-D3-A3C7-06 1 166990344 166990344 G A MAEL Missense_Mutation p.G355E 0.43 tolerated(0.13) benign(0.357) TCGA-D3-A3C7-06 1 169388157 169388157 C T CCDC181 Intron 0.29 TCGA-D3-A3C7-06 1 169511239 169511239 C T F5 Missense_Mutation p.R1030Q 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 169580879 169580879 C T SELP Missense_Mutation p.G333E 0.27 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C7-06 1 172007556 172007556 A T DNM3 Missense_Mutation p.N316I 0.39 deleterious(0) probably_damaging(0.937) TCGA-D3-A3C7-06 1 176668404 176668404 C T PAPPA2 Missense_Mutation p.S972F 0.29 tolerated(0.38) benign(0.013) TCGA-D3-A3C7-06 1 176927571 176927571 C T ASTN1 Missense_Mutation p.S549N 0.29 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D3-A3C7-06 1 179631290 179631290 G A TDRD5 Missense_Mutation p.D792N 0.42 deleterious(0.04) probably_damaging(1) TCGA-D3-A3C7-06 1 180853285 180853285 C T XPR1 3'UTR 0.47 TCGA-D3-A3C7-06 1 181727957 181727957 G A CACNA1E Missense_Mutation p.V1520M 0.41 tolerated(0.47) possibly_damaging(0.86) TCGA-D3-A3C7-06 1 183515287 183515287 C T SMG7 Missense_Mutation p.P807S 0.40 deleterious_low_confidence(0.02) benign(0.242) TCGA-D3-A3C7-06 1 186043883 186043883 C T HMCN1 Missense_Mutation p.S2717F 0.32 possibly_damaging(0.639) TCGA-D3-A3C7-06 1 186276363 186276363 G A PRG4 Silent p.K504K 0.28 TCGA-D3-A3C7-06 1 19570194 19570194 G A EMC1 Silent p.I98I 0.41 TCGA-D3-A3C7-06 1 196799639 196799639 G A CFHR1 Missense_Mutation p.G206E 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3C7-06 1 197390429 197390429 G A CRB1 Missense_Mutation p.D491N 0.32 tolerated(1) benign(0) TCGA-D3-A3C7-06 1 198247118 198247118 C T NEK7 Missense_Mutation p.P134S 0.28 tolerated(0.11) benign(0.091) TCGA-D3-A3C7-06 1 201081481 201081481 A G CACNA1S 5'UTR 0.29 TCGA-D3-A3C7-06 1 201263067 201263067 T C PKP1 Intron 0.68 TCGA-D3-A3C7-06 1 202121710 202121710 C T PTPN7 Missense_Mutation p.E384K 0.31 tolerated(0.28) benign(0.208) TCGA-D3-A3C7-06 1 202566040 202566040 C T SYT2 Missense_Mutation p.E369K 0.28 deleterious(0) possibly_damaging(0.855) TCGA-D3-A3C7-06 1 204197962 204197962 G A PLEKHA6 Missense_Mutation p.P927S 0.22 deleterious(0.03) possibly_damaging(0.607) TCGA-D3-A3C7-06 1 204945813 204945813 A T NFASC Missense_Mutation p.D574V 0.25 deleterious(0.02) probably_damaging(0.939) TCGA-D3-A3C7-06 1 205811876 205811876 C T PM20D1 Silent p.L277L 0.26 TCGA-D3-A3C7-06 1 205899142 205899142 G A SLC26A9 Missense_Mutation p.L199F 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 1 206628240 206628240 G A SRGAP2 Missense_Mutation p.E707K 0.25 tolerated(0.07) benign(0.199) TCGA-D3-A3C7-06 1 20996944 20996944 G A KIF17 Silent p.T921T 0.29 TCGA-D3-A3C7-06 1 214819674 214819674 C T CENPF Missense_Mutation p.S2254F 0.21 possibly_damaging(0.885) TCGA-D3-A3C7-06 1 216496976 216496976 G A USH2A Missense_Mutation p.R464C 0.30 probably_damaging(1) TCGA-D3-A3C7-06 1 220340851 220340851 G A RAB3GAP2 Silent p.A991A 0.30 TCGA-D3-A3C7-06 1 220340852 220340852 G A RAB3GAP2 Missense_Mutation p.A991V 0.30 tolerated(0.31) benign(0.068) TCGA-D3-A3C7-06 1 226019641 226019641 C T EPHX1 Silent p.H115H 0.27 TCGA-D3-A3C7-06 1 228596850 228596850 C T TRIM17 Intron 0.44 TCGA-D3-A3C7-06 1 231376911 231376911 C T C1orf131 5'UTR 0.29 TCGA-D3-A3C7-06 1 232942697 232942697 A G MAP10 Missense_Mutation p.N643S 0.33 deleterious(0) probably_damaging(0.923) TCGA-D3-A3C7-06 1 233512253 233512253 C T MLK4 Missense_Mutation p.S635L 0.24 tolerated(0.06) possibly_damaging(0.797) TCGA-D3-A3C7-06 1 233515355 233515355 C T MLK4 Missense_Mutation p.S868F 0.32 deleterious(0.02) benign(0.223) TCGA-D3-A3C7-06 1 233802528 233802528 C T KCNK1 Silent p.I181I 0.27 TCGA-D3-A3C7-06 1 235324630 235324630 C T RBM34 5'UTR 0.60 TCGA-D3-A3C7-06 1 236979789 236979789 C T MTR Missense_Mutation p.S237F 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 238050115 238050115 C T ZP4 Silent p.V265V 0.24 TCGA-D3-A3C7-06 1 238090420 238090420 C T RP11-193H5.1 RNA 0.24 TCGA-D3-A3C7-06 1 240351539 240351539 A T FMN2 Nonsense_Mutation p.K655* 0.18 TCGA-D3-A3C7-06 1 24447335 24447335 A T IL22RA1 Missense_Mutation p.L562H 0.37 deleterious(0) probably_damaging(0.982) TCGA-D3-A3C7-06 1 245775268 245775268 G A KIF26B Silent p.G696G 0.22 TCGA-D3-A3C7-06 1 247737496 247737496 C T GCSAML Missense_Mutation p.H74Y 0.24 deleterious(0.03) probably_damaging(0.921) TCGA-D3-A3C7-06 1 247752385 247752385 G A OR2G2 Missense_Mutation p.G242R 0.37 deleterious(0.03) benign(0.177) TCGA-D3-A3C7-06 1 247752599 247752599 G A OR2G2 Missense_Mutation p.G313E 0.23 tolerated(0.43) unknown(0) TCGA-D3-A3C7-06 1 248343365 248343365 C T OR2M2 Silent p.F26F 0.27 TCGA-D3-A3C7-06 1 248366832 248366832 G A OR2M3 Missense_Mutation p.D155N 0.27 tolerated(0.16) benign(0.314) TCGA-D3-A3C7-06 1 248525185 248525185 G A OR2T4 Missense_Mutation p.M101I 0.22 tolerated(0.23) benign(0.045) TCGA-D3-A3C7-06 1 248525707 248525707 C T OR2T4 Silent p.S275S 0.25 TCGA-D3-A3C7-06 1 248616128 248616128 C T OR2T2 Silent p.S10S 0.11 TCGA-D3-A3C7-06 1 248637593 248637593 G A OR2T3 Missense_Mutation p.M314I 0.10 tolerated(0.47) benign(0.003) TCGA-D3-A3C7-06 1 27434230 27434230 G A SLC9A1 Silent p.F397F 0.44 TCGA-D3-A3C7-06 1 28271830 28271830 C T SMPDL3B Missense_Mutation p.S50F 0.30 deleterious(0.04) benign(0.053) TCGA-D3-A3C7-06 1 28907611 28907611 C T TRNAU1AP 3'Flank 0.32 TCGA-D3-A3C7-06 1 28920632 28920632 C T RAB42 3'UTR 0.35 TCGA-D3-A3C7-06 1 31347418 31347418 G A SDC3 Silent p.T296T 0.21 TCGA-D3-A3C7-06 1 31811831 31811831 C T ZCCHC17 Missense_Mutation p.L85F 0.31 tolerated(0.1) possibly_damaging(0.812) TCGA-D3-A3C7-06 1 3334427 3334427 G C PRDM16 Missense_Mutation p.E909D 0.38 tolerated(0.08) benign(0.026) TCGA-D3-A3C7-06 1 3397060 3397060 C T ARHGEF16 Missense_Mutation p.P680L 0.27 tolerated(0.12) probably_damaging(1) TCGA-D3-A3C7-06 1 36225975 36225975 G A CLSPN Missense_Mutation p.S516F 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C7-06 1 36359681 36359681 C T AGO1 Silent p.F231F 0.39 TCGA-D3-A3C7-06 1 36644056 36644056 C T MAP7D1 Missense_Mutation p.P582L 0.50 probably_damaging(1) TCGA-D3-A3C7-06 1 36644057 36644057 C T MAP7D1 Silent p.P582P 0.50 TCGA-D3-A3C7-06 1 40092735 40092735 G A HEYL Missense_Mutation p.P144L 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 42045916 42045916 G A HIVEP3 Missense_Mutation p.P1518L 0.38 benign(0.146) TCGA-D3-A3C7-06 1 43663223 43663223 G A WDR65 Splice_Site p.X375_splice 0.40 TCGA-D3-A3C7-06 1 43773242 43773242 A C TIE1 Missense_Mutation p.E304D 0.33 tolerated(0.19) benign(0.003) TCGA-D3-A3C7-06 1 44083415 44083415 G A PTPRF Missense_Mutation p.G1402R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 44083416 44083416 G A PTPRF Missense_Mutation p.G1402E 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 45797397 45797397 G A MUTYH Silent p.T371T 0.33 TCGA-D3-A3C7-06 1 47276530 47276530 C T CYP4B1 Silent p.F77F 0.35 TCGA-D3-A3C7-06 1 55223545 55223545 G A PARS2 Silent p.Y430Y 0.30 TCGA-D3-A3C7-06 1 55474242 55474242 G A BSND Missense_Mutation p.G302R 0.28 deleterious(0.01) possibly_damaging(0.603) TCGA-D3-A3C7-06 1 57258437 57258437 G A C1orf168 Nonsense_Mutation p.Q17* 0.32 TCGA-D3-A3C7-06 1 57399055 57399055 G A C8B Missense_Mutation p.S502F 0.41 deleterious(0) possibly_damaging(0.851) TCGA-D3-A3C7-06 1 5964795 5964795 G A NPHP4 Silent p.F675F 0.38 TCGA-D3-A3C7-06 1 60463316 60463316 T C C1orf87 Missense_Mutation p.E482G 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 1 6314056 6314056 G A GPR153 Silent p.L170L 0.26 TCGA-D3-A3C7-06 1 6314057 6314057 G A GPR153 Silent p.G169G 0.26 TCGA-D3-A3C7-06 1 64095113 64095113 C T PGM1 Silent p.I106I 0.38 TCGA-D3-A3C7-06 1 65143967 65143967 C T CACHD1 Missense_Mutation p.P1022L 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 1 7724103 7724103 G A CAMTA1 Missense_Mutation p.G499E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 1 82408771 82408771 C T LPHN2 Silent p.F172F 0.39 TCGA-D3-A3C7-06 1 84408234 84408234 G A TTLL7 Missense_Mutation p.S212L 0.36 deleterious(0) probably_damaging(0.983) TCGA-D3-A3C7-06 1 8716118 8716118 G A RERE Missense_Mutation p.P80L 0.36 possibly_damaging(0.814) TCGA-D3-A3C7-06 1 89652711 89652711 G A GBP4 Silent p.A495A 0.35 TCGA-D3-A3C7-06 1 91859874 91859874 G A HFM1 Silent p.F90F 0.50 TCGA-D3-A3C7-06 1 93298949 93298949 T C RPL5 Missense_Mutation p.F3L 0.34 tolerated(0.07) benign(0.193) TCGA-D3-A3C7-06 1 98060686 98060686 C T DPYD Missense_Mutation p.G296D 0.30 tolerated(0.25) benign(0.004) TCGA-D3-A3C7-06 1 98060687 98060687 C T DPYD Missense_Mutation p.G296S 0.31 tolerated(0.05) benign(0.025) TCGA-D3-A3C7-06 20 10273890 10273890 G A SNAP25 Missense_Mutation p.G82E 0.37 tolerated(1) benign(0.293) TCGA-D3-A3C7-06 20 1471926 1471926 G A SIRPB2 Missense_Mutation p.P27L 0.36 tolerated(1) benign(0.01) TCGA-D3-A3C7-06 20 18794514 18794514 G A SCP2D1 Missense_Mutation p.V19M 0.33 deleterious(0.05) benign(0.161) TCGA-D3-A3C7-06 20 19664827 19664827 C T SLC24A3 Silent p.F303F 0.32 TCGA-D3-A3C7-06 20 20484026 20484026 G A RALGAPA2 Missense_Mutation p.P1726L 0.31 deleterious(0.02) possibly_damaging(0.873) TCGA-D3-A3C7-06 20 24959505 24959505 G A APMAP Missense_Mutation p.P76S 0.43 deleterious(0) possibly_damaging(0.701) TCGA-D3-A3C7-06 20 24959506 24959506 G A APMAP Silent p.P75P 0.42 TCGA-D3-A3C7-06 20 25000673 25000673 G A ACSS1 Missense_Mutation p.R407C 0.36 deleterious(0) probably_damaging(0.993) TCGA-D3-A3C7-06 20 29960918 29960918 C T DEFB118 Missense_Mutation p.S106F 0.30 tolerated(0.29) possibly_damaging(0.831) TCGA-D3-A3C7-06 20 35668583 35668583 G A RBL1 Nonsense_Mutation p.R626* 0.37 TCGA-D3-A3C7-06 20 37356590 37356590 A G SLC32A1 Missense_Mutation p.K296E 0.38 tolerated(0.24) benign(0.173) TCGA-D3-A3C7-06 20 40790000 40790000 C T PTPRT Missense_Mutation p.E892K 0.35 deleterious(0.01) benign(0.019) TCGA-D3-A3C7-06 20 43129877 43129877 G A SERINC3 Missense_Mutation p.L374F 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A3C7-06 20 43561110 43561110 T A PABPC1L Intron 0.33 TCGA-D3-A3C7-06 20 44987131 44987131 G A SLC35C2 Silent p.A5A 0.30 TCGA-D3-A3C7-06 20 47887289 47887289 G A ZNFX1 Missense_Mutation p.R354C 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 20 50230311 50230311 G A ATP9A Missense_Mutation p.R826W 0.41 deleterious(0) probably_damaging(0.987) TCGA-D3-A3C7-06 20 51871554 51871554 T G TSHZ2 Silent p.S519S 0.38 TCGA-D3-A3C7-06 20 55026928 55026928 C T CASS4 Silent p.S232S 0.35 TCGA-D3-A3C7-06 20 57428697 57428697 G A GNAS Missense_Mutation p.G126E 0.24 deleterious_low_confidence(0) unknown(0) TCGA-D3-A3C7-06 20 57599799 57599799 G A TUBB1 Silent p.T439T 0.14 TCGA-D3-A3C7-06 20 57829535 57829535 C T ZNF831 Missense_Mutation p.P1591S 0.42 tolerated(0.16) probably_damaging(0.928) TCGA-D3-A3C7-06 20 58475306 58475306 C T SYCP2 Missense_Mutation p.G431R 0.36 tolerated(0.48) benign(0.001) TCGA-D3-A3C7-06 20 6088199 6088199 A T FERMT1 Missense_Mutation p.F277I 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3C7-06 20 62316899 62316899 C T RTEL1 Silent p.S429S 0.34 TCGA-D3-A3C7-06 20 62421499 62421499 C T ZBTB46 Silent p.K204K 0.21 TCGA-D3-A3C7-06 20 7866479 7866479 C T HAO1 Silent p.V282V 0.37 TCGA-D3-A3C7-06 21 10914373 10914373 C T TPTE Missense_Mutation p.G449E 0.10 tolerated(0.55) benign(0.006) TCGA-D3-A3C7-06 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.14 tolerated(0.06) benign(0.063) TCGA-D3-A3C7-06 21 10973727 10973727 C T TPTE Missense_Mutation p.E3K 0.19 tolerated_low_confidence(0.2) benign(0) TCGA-D3-A3C7-06 21 11039407 11039407 C T BAGE2 RNA 0.07 TCGA-D3-A3C7-06 21 15352093 15352093 C T ANKRD20A11P RNA 0.45 TCGA-D3-A3C7-06 21 15561499 15561499 G A LIPI Silent p.F117F 0.33 TCGA-D3-A3C7-06 21 28338411 28338411 C T ADAMTS5 Silent p.L100L 0.31 TCGA-D3-A3C7-06 21 30419289 30419289 C T USP16 Missense_Mutation p.P553L 0.40 tolerated(0.18) benign(0.287) TCGA-D3-A3C7-06 21 30949456 30949456 C T GRIK1 Missense_Mutation p.G653E 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 21 33975427 33975427 G A C21orf59 Intron 0.26 TCGA-D3-A3C7-06 21 35893825 35893825 G A RCAN1 Silent p.L186L 0.41 TCGA-D3-A3C7-06 21 38538400 38538400 C T TTC3 Missense_Mutation p.S1295F 0.34 deleterious(0.05) possibly_damaging(0.868) TCGA-D3-A3C7-06 21 41719788 41719788 G A DSCAM Missense_Mutation p.T340I 0.37 tolerated(0.24) benign(0.284) TCGA-D3-A3C7-06 21 42080671 42080671 G A DSCAM Missense_Mutation p.L24F 0.31 deleterious(0) probably_damaging(0.986) TCGA-D3-A3C7-06 21 42710382 42710382 G A FAM3B Missense_Mutation p.G81R 0.26 deleterious(0.02) possibly_damaging(0.808) TCGA-D3-A3C7-06 21 43531574 43531574 C T UMODL1 Missense_Mutation p.P748S 0.21 tolerated(0.33) possibly_damaging(0.803) TCGA-D3-A3C7-06 21 45929219 45929219 G A TSPEAR Silent p.F539F 0.29 TCGA-D3-A3C7-06 21 46047570 46047570 C T KRTAP10-9 Missense_Mutation p.S161L 0.28 tolerated(0.11) unknown(0) TCGA-D3-A3C7-06 22 18028326 18028326 C T CECR2 Missense_Mutation p.P1096S 0.83 tolerated_low_confidence(0.87) benign(0.003) TCGA-D3-A3C7-06 22 26118328 26118328 C T ADRBK2 Missense_Mutation p.R660C 0.86 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-D3-A3C7-06 22 32589013 32589013 C T RFPL2 Missense_Mutation p.M144I 0.25 tolerated(0.11) benign(0.011) TCGA-D3-A3C7-06 22 35660647 35660647 C T HMGXB4 Missense_Mutation p.S89L 0.76 tolerated(0.19) benign(0.022) TCGA-D3-A3C7-06 22 39067278 39067278 C T CBY1 Intron 0.85 TCGA-D3-A3C7-06 22 40803434 40803434 T A SGSM3 Nonsense_Mutation p.Y462* 0.54 TCGA-D3-A3C7-06 22 43089095 43089095 G A A4GALT Missense_Mutation p.P288L 0.67 deleterious(0.02) possibly_damaging(0.719) TCGA-D3-A3C7-06 22 43933267 43933267 G A EFCAB6 Silent p.S1346S 0.72 TCGA-D3-A3C7-06 22 43933268 43933268 G A EFCAB6 Missense_Mutation p.S1346F 0.72 deleterious(0.01) possibly_damaging(0.519) TCGA-D3-A3C7-06 22 44692610 44692610 C T KIAA1644 Missense_Mutation p.E75K 0.79 deleterious(0) benign(0.228) TCGA-D3-A3C7-06 22 45961049 45961049 C T FBLN1 Intron 0.71 TCGA-D3-A3C7-06 22 46327142 46327142 C T WNT7B Missense_Mutation p.E136K 0.76 tolerated(0.56) benign(0.025) TCGA-D3-A3C7-06 2 105713766 105713766 C T MRPS9 Silent p.V361V 0.21 TCGA-D3-A3C7-06 2 109546615 109546615 C T EDAR Silent p.Q45Q 0.27 TCGA-D3-A3C7-06 2 120194596 120194596 C T TMEM37 Silent p.L51L 0.37 TCGA-D3-A3C7-06 2 128367259 128367259 T C MYO7B Missense_Mutation p.L998S 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 2 128390866 128390866 G A MYO7B Silent p.V1787V 0.29 TCGA-D3-A3C7-06 2 128699505 128699505 A T SAP130 3'UTR 0.55 TCGA-D3-A3C7-06 2 130878044 130878044 C T POTEF Silent p.K15K 0.36 TCGA-D3-A3C7-06 2 131519914 131519914 G A AMER3 Missense_Mutation p.R90Q 0.28 tolerated(0.11) benign(0.184) TCGA-D3-A3C7-06 2 133403686 133403686 C T LYPD1 Missense_Mutation p.A120T 0.24 tolerated_low_confidence(0.22) benign(0.002) TCGA-D3-A3C7-06 2 135743570 135743570 C T MAP3K19 Missense_Mutation p.D958N 0.30 tolerated(0.14) benign(0.132) TCGA-D3-A3C7-06 2 135744273 135744273 C T MAP3K19 Missense_Mutation p.M723I 0.39 tolerated(0.4) benign(0) TCGA-D3-A3C7-06 2 135779399 135779399 T G MAP3K19 Missense_Mutation p.E8D 0.30 tolerated_low_confidence(0.06) benign(0.085) TCGA-D3-A3C7-06 2 138400065 138400065 G A THSD7B Missense_Mutation p.M1272I 0.29 deleterious(0.04) unknown(0) TCGA-D3-A3C7-06 2 152492815 152492815 T G NEB Missense_Mutation p.K3010Q 0.33 possibly_damaging(0.561) TCGA-D3-A3C7-06 2 153405583 153405583 G A FMNL2 Missense_Mutation p.E111K 0.31 probably_damaging(0.936) TCGA-D3-A3C7-06 2 153475610 153475610 C T FMNL2 Missense_Mutation p.S522F 0.33 probably_damaging(0.921) TCGA-D3-A3C7-06 2 159522971 159522971 C T PKP4 Missense_Mutation p.P875L 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 2 163393558 163393558 G A KCNH7 Missense_Mutation p.P114S 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 2 165809291 165809291 C T SLC38A11 Intron 0.41 TCGA-D3-A3C7-06 2 166859089 166859089 G A SCN1A Missense_Mutation p.H1393Y 0.38 tolerated(0.22) benign(0.001) TCGA-D3-A3C7-06 2 167129157 167129157 C T SCN9A Missense_Mutation p.E1024K 0.34 tolerated(0.33) benign(0.006) TCGA-D3-A3C7-06 2 167162390 167162390 T A SCN9A Nonsense_Mutation p.K170* 0.43 TCGA-D3-A3C7-06 2 167759998 167759998 C T XIRP2 Silent p.F2F 0.37 TCGA-D3-A3C7-06 2 167760381 167760381 C T XIRP2 Missense_Mutation p.P130L 0.27 benign(0.008) TCGA-D3-A3C7-06 2 168099978 168099978 G A XIRP2 Silent p.V692V 0.38 TCGA-D3-A3C7-06 2 168108204 168108204 G A XIRP2 Missense_Mutation p.M3434I 0.53 benign(0.005) TCGA-D3-A3C7-06 2 174229542 174229542 G A CDCA7 Missense_Mutation p.R240K 0.30 deleterious(0.04) probably_damaging(0.967) TCGA-D3-A3C7-06 2 175243705 175243705 G A CIR1 Missense_Mutation p.P144S 0.32 deleterious(0.05) unknown(0) TCGA-D3-A3C7-06 2 179396101 179396101 C T TTN Missense_Mutation p.E35081K 0.41 TCGA-D3-A3C7-06 2 179580319 179580319 C T TTN Missense_Mutation p.E8608K 0.29 TCGA-D3-A3C7-06 2 179613668 179613668 G A TTN Intron 0.41 TCGA-D3-A3C7-06 2 179634502 179634502 G A TTN Missense_Mutation p.H2936Y 0.32 TCGA-D3-A3C7-06 2 186673690 186673690 A G FSIP2 Missense_Mutation p.K6642E 0.58 benign(0.306) TCGA-D3-A3C7-06 2 18757621 18757621 C T NT5C1B Silent p.A446A 0.20 TCGA-D3-A3C7-06 2 187702078 187702078 G A ZSWIM2 Missense_Mutation p.P233L 0.28 tolerated(0.1) possibly_damaging(0.658) TCGA-D3-A3C7-06 2 189862072 189862072 G A COL3A1 Missense_Mutation p.G609E 0.42 unknown(0) TCGA-D3-A3C7-06 2 189904289 189904289 C T COL5A2 Missense_Mutation p.G1212S 0.25 unknown(0) TCGA-D3-A3C7-06 2 189943830 189943830 C T COL5A2 Missense_Mutation p.E322K 0.44 probably_damaging(0.963) TCGA-D3-A3C7-06 2 196682525 196682525 G A DNAH7 Missense_Mutation p.P3107L 0.36 deleterious(0.03) benign(0.03) TCGA-D3-A3C7-06 2 197208412 197208412 C T HECW2 Nonsense_Mutation p.W123* 0.39 TCGA-D3-A3C7-06 2 198949555 198949555 C T PLCL1 Silent p.G438G 0.38 TCGA-D3-A3C7-06 2 20202958 20202958 C T MATN3 Missense_Mutation p.G294R 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 2 202215474 202215474 G A ALS2CR12 Missense_Mutation p.H49Y 0.40 tolerated(0.62) benign(0.002) TCGA-D3-A3C7-06 2 203075522 203075522 G A SUMO1 Missense_Mutation p.P58L 0.30 deleterious(0) benign(0.048) TCGA-D3-A3C7-06 2 20455081 20455081 G A PUM2 Missense_Mutation p.P882S 0.46 deleterious(0.04) possibly_damaging(0.802) TCGA-D3-A3C7-06 2 20647414 20647414 A C RHOB Missense_Mutation p.Q63P 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A3C7-06 2 208994531 208994531 G A CRYGC 5'UTR 0.36 TCGA-D3-A3C7-06 2 211455618 211455618 C T CPS1 Missense_Mutation p.S318F 0.32 deleterious(0) benign(0.218) TCGA-D3-A3C7-06 2 211455619 211455619 C A CPS1 Silent p.S318S 0.31 TCGA-D3-A3C7-06 2 21231795 21231795 C T APOB Missense_Mutation p.E2649K 0.38 benign(0.265) TCGA-D3-A3C7-06 2 219525811 219525811 A G BCS1L Missense_Mutation p.K34R 0.31 tolerated(0.51) benign(0.364) TCGA-D3-A3C7-06 2 219825368 219825368 G A CDK5R2 Missense_Mutation p.E276K 0.35 deleterious(0) benign(0.23) TCGA-D3-A3C7-06 2 220348848 220348848 A C SPEG Missense_Mutation p.E2221D 0.39 benign(0.063) TCGA-D3-A3C7-06 2 220431639 220431639 G A OBSL1 Silent p.L683L 0.44 TCGA-D3-A3C7-06 2 228104886 228104886 G A COL4A3 Missense_Mutation p.G58S 0.30 probably_damaging(1) TCGA-D3-A3C7-06 2 228155586 228155586 G A COL4A3 Missense_Mutation p.G1065E 0.39 unknown(0) TCGA-D3-A3C7-06 2 229890376 229890376 G A PID1 Missense_Mutation p.S240F 0.27 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C7-06 2 229890452 229890452 C T PID1 Missense_Mutation p.E215K 0.38 deleterious(0.02) possibly_damaging(0.689) TCGA-D3-A3C7-06 2 230411738 230411738 G A DNER Silent p.T306T 0.35 TCGA-D3-A3C7-06 2 230910666 230910666 A T SLC16A14 Silent p.L392L 0.30 TCGA-D3-A3C7-06 2 233244608 233244608 G A ALPP Missense_Mutation p.D207N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 2 233422643 233422643 T A EIF4E2 Missense_Mutation p.F62Y 0.45 deleterious(0.01) possibly_damaging(0.542) TCGA-D3-A3C7-06 2 237489792 237489792 C T ACKR3 Silent p.I228I 0.41 TCGA-D3-A3C7-06 2 238726978 238726978 T G RBM44 Silent p.T473T 0.32 TCGA-D3-A3C7-06 2 239010659 239010659 C T ESPNL Silent p.L124L 0.29 TCGA-D3-A3C7-06 2 239234471 239234471 T A TRAF3IP1 Missense_Mutation p.F72I 0.26 deleterious(0) possibly_damaging(0.781) TCGA-D3-A3C7-06 2 241533346 241533346 C T CAPN10 Missense_Mutation p.H238Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 2 242075323 242075323 G A PASK Silent p.D423D 0.41 TCGA-D3-A3C7-06 2 242814229 242814229 G A CXXC11 Silent p.T174T 0.53 TCGA-D3-A3C7-06 2 27521592 27521592 A G TRIM54 Missense_Mutation p.K109R 0.38 tolerated(0.1) benign(0.065) TCGA-D3-A3C7-06 2 27535421 27535421 G A MPV17 Silent p.L105L 0.33 TCGA-D3-A3C7-06 2 29917784 29917784 G A ALK Missense_Mutation p.S295F 0.33 deleterious_low_confidence(0.02) benign(0.119) TCGA-D3-A3C7-06 2 32481851 32481851 G A NLRC4 5'UTR 0.29 TCGA-D3-A3C7-06 2 32481852 32481852 G A NLRC4 5'UTR 0.26 TCGA-D3-A3C7-06 2 37234374 37234374 G A HEATR5B Silent p.L1532L 0.33 TCGA-D3-A3C7-06 2 37586815 37586815 C T QPCT Silent p.F120F 0.39 TCGA-D3-A3C7-06 2 66795932 66795932 G A MEIS1 Intron 0.38 TCGA-D3-A3C7-06 2 66795933 66795933 A C MEIS1 Intron 0.35 TCGA-D3-A3C7-06 2 74902381 74902381 G A SEMA4F Missense_Mutation p.M414I 0.41 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 2 74902382 74902382 G A SEMA4F Missense_Mutation p.D415N 0.41 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A3C7-06 2 84780120 84780120 C T DNAH6 Nonsense_Mutation p.Q522* 0.38 TCGA-D3-A3C7-06 2 85554604 85554604 G A TGOLN2 Missense_Mutation p.S84L 0.36 tolerated(0.35) possibly_damaging(0.776) TCGA-D3-A3C7-06 2 88393054 88393054 C T SMYD1 Silent p.S226S 0.23 TCGA-D3-A3C7-06 2 89399622 89399622 G A IGKV1-16 Silent p.T27T 0.36 TCGA-D3-A3C7-06 2 89513167 89513167 G A IGKV1-27 Missense_Mutation p.S31F 0.15 deleterious(0.01) benign(0.122) TCGA-D3-A3C7-06 2 97278298 97278298 G A KANSL3 Silent p.V305V 0.38 TCGA-D3-A3C7-06 2 97279279 97279279 G A KANSL3 Silent p.L247L 0.35 TCGA-D3-A3C7-06 2 97530946 97530946 A G SEMA4C Missense_Mutation p.L210P 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 2 99812098 99812098 T A MRPL30 Missense_Mutation p.L139H 0.34 deleterious(0) probably_damaging(0.986) TCGA-D3-A3C7-06 2 99977974 99977974 C T EIF5B Nonsense_Mutation p.Q204* 0.28 TCGA-D3-A3C7-06 3 100645200 100645200 G A ABI3BP Missense_Mutation p.P76S 0.26 tolerated(0.9) possibly_damaging(0.641) TCGA-D3-A3C7-06 3 101311501 101311501 C T PCNP Silent p.S147S 0.34 TCGA-D3-A3C7-06 3 101572119 101572119 C T NFKBIZ Missense_Mutation p.P250L 0.37 tolerated_low_confidence(0.09) possibly_damaging(0.613) TCGA-D3-A3C7-06 3 108476003 108476003 G A RETNLB Silent p.I10I 0.24 TCGA-D3-A3C7-06 3 111263901 111263901 G A CD96 Missense_Mutation p.E24K 0.29 tolerated(0.13) benign(0.393) TCGA-D3-A3C7-06 3 111927084 111927084 C T SLC9C1 Missense_Mutation p.E643K 0.40 deleterious(0.03) probably_damaging(0.913) TCGA-D3-A3C7-06 3 113342554 113342554 T A SIDT1 Missense_Mutation p.F761I 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 3 114070718 114070718 G A ZBTB20 Silent p.I69I 0.43 TCGA-D3-A3C7-06 3 11885596 11885596 G A TAMM41 Silent p.F75F 0.62 TCGA-D3-A3C7-06 3 119367478 119367478 G A POPDC2 Missense_Mutation p.S213F 0.41 deleterious(0) probably_damaging(0.983) TCGA-D3-A3C7-06 3 119462887 119462887 C T MAATS1 Silent p.F582F 0.30 TCGA-D3-A3C7-06 3 121304901 121304901 G A ARGFX Silent p.K134K 0.30 TCGA-D3-A3C7-06 3 121647371 121647371 C T SLC15A2 Missense_Mutation p.S437F 0.36 tolerated(0.71) benign(0.013) TCGA-D3-A3C7-06 3 121649724 121649724 C T SLC15A2 Silent p.L531L 0.49 TCGA-D3-A3C7-06 3 121712403 121712403 G A ILDR1 Missense_Mutation p.S398L 0.36 tolerated(0.84) benign(0.053) TCGA-D3-A3C7-06 3 121976192 121976192 C T CASR Silent p.S150S 0.41 TCGA-D3-A3C7-06 3 123401111 123401111 C T MYLK Silent p.R1204R 0.42 TCGA-D3-A3C7-06 3 124810994 124810994 G A SLC12A8 Missense_Mutation p.S585F 0.35 deleterious(0) benign(0.258) TCGA-D3-A3C7-06 3 126201114 126201114 G A UROC1 3'UTR 0.28 TCGA-D3-A3C7-06 3 127336175 127336175 C T MCM2 Silent p.I609I 0.44 TCGA-D3-A3C7-06 3 128809915 128809915 C G RAB43 3'UTR 0.35 TCGA-D3-A3C7-06 3 133099320 133099320 G A TMEM108 Silent p.A255A 0.27 TCGA-D3-A3C7-06 3 133910819 133910819 C T RYK Missense_Mutation p.G298S 0.37 tolerated(1) benign(0.003) TCGA-D3-A3C7-06 3 136699297 136699297 C T IL20RB Intron 0.40 TCGA-D3-A3C7-06 3 139297856 139297856 C T NMNAT3 Missense_Mutation p.D14N 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A3C7-06 3 142985627 142985627 C T SLC9A9 Missense_Mutation p.E619K 0.43 deleterious(0) benign(0.137) TCGA-D3-A3C7-06 3 146177821 146177821 C T PLSCR2 Silent p.G30G 0.44 TCGA-D3-A3C7-06 3 148459572 148459572 C T AGTR1 Silent p.F250F 0.45 TCGA-D3-A3C7-06 3 150404140 150404140 C T FAM194A Silent p.R185R 0.40 TCGA-D3-A3C7-06 3 150911442 150911442 C T MED12L Missense_Mutation p.P712S 0.40 deleterious(0.01) benign(0.088) TCGA-D3-A3C7-06 3 150931715 150931715 A T P2RY14 Silent p.S130S 0.14 TCGA-D3-A3C7-06 3 151463442 151463442 A G AADACL2 Missense_Mutation p.N193D 0.35 deleterious(0) benign(0.026) TCGA-D3-A3C7-06 3 153905608 153905608 G A ARHGEF26 Missense_Mutation p.R541Q 0.20 deleterious(0) possibly_damaging(0.818) TCGA-D3-A3C7-06 3 153943635 153943635 C T ARHGEF26 Intron 0.39 TCGA-D3-A3C7-06 3 154138962 154138962 C T GPR149 Missense_Mutation p.G497R 0.48 tolerated(0.21) benign(0.006) TCGA-D3-A3C7-06 3 154898211 154898211 C T MME Missense_Mutation p.S739L 0.32 deleterious(0) benign(0.213) TCGA-D3-A3C7-06 3 155215185 155215185 G A PLCH1 Silent p.T594T 0.30 TCGA-D3-A3C7-06 3 16411787 16411787 C T RFTN1 Splice_Site p.X276_splice 0.60 TCGA-D3-A3C7-06 3 170244740 170244740 G A SLC7A14 5'UTR 0.47 TCGA-D3-A3C7-06 3 171330184 171330184 G A PLD1 Missense_Mutation p.R923C 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 3 173998905 173998905 T A NLGN1 Missense_Mutation p.Y762N 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A3C7-06 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.18 tolerated(0.6) benign(0.016) TCGA-D3-A3C7-06 3 185146352 185146352 G C MAP3K13 5'UTR 0.38 TCGA-D3-A3C7-06 3 185969597 185969597 C T DGKG Missense_Mutation p.G571E 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C7-06 3 189349287 189349287 C T TP63 5'UTR 0.38 TCGA-D3-A3C7-06 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.41 TCGA-D3-A3C7-06 3 190106098 190106098 C T CLDN16 Missense_Mutation p.P64S 0.24 tolerated_low_confidence(0.47) benign(0.001) TCGA-D3-A3C7-06 3 196215511 196215511 T C RNF168 Silent p.E115E 0.34 TCGA-D3-A3C7-06 3 197403774 197403774 G A KIAA0226 Silent p.T876T 0.32 TCGA-D3-A3C7-06 3 25781072 25781072 G A NGLY1 Missense_Mutation p.P293S 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 3 36872412 36872412 C T TRANK1 Missense_Mutation p.V2844I 0.40 tolerated(0.6) benign(0.034) TCGA-D3-A3C7-06 3 36899226 36899226 G A TRANK1 Missense_Mutation p.H619Y 0.33 tolerated(0.42) benign(0.303) TCGA-D3-A3C7-06 3 38793755 38793755 T C SCN10A Silent p.Q570Q 0.33 TCGA-D3-A3C7-06 3 39225664 39225664 C T XIRP1 Missense_Mutation p.S1758N 0.43 deleterious(0.01) benign(0.11) TCGA-D3-A3C7-06 3 42956297 42956297 G A ZNF662 Silent p.G270G 0.44 TCGA-D3-A3C7-06 3 44763909 44763909 C T ZNF502 Missense_Mutation p.L534F 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3C7-06 3 45748372 45748372 G A SACM1L Silent p.K102K 0.51 TCGA-D3-A3C7-06 3 46307148 46307148 C T CCR3 Missense_Mutation p.P188S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 3 46307149 46307149 C T CCR3 Missense_Mutation p.P188L 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C7-06 3 46399601 46399601 C T CCR2 Missense_Mutation p.P195S 0.38 tolerated(0.1) possibly_damaging(0.612) TCGA-D3-A3C7-06 3 46945184 46945184 G A PTH1R 3'UTR 0.31 TCGA-D3-A3C7-06 3 48624701 48624701 C T COL7A1 Missense_Mutation p.G1021S 0.48 unknown(0) TCGA-D3-A3C7-06 3 48691417 48691417 G A CELSR3 Silent p.H1724H 0.35 TCGA-D3-A3C7-06 3 49051357 49051357 G A WDR6 Missense_Mutation p.G827D 0.34 tolerated(0.34) benign(0.224) TCGA-D3-A3C7-06 3 50223737 50223737 G A SEMA3F Missense_Mutation p.R590Q 0.47 deleterious(0.01) possibly_damaging(0.536) TCGA-D3-A3C7-06 3 50294242 50294242 C T GNAI2 Silent p.A227A 0.45 TCGA-D3-A3C7-06 3 50416522 50416522 C T CACNA2D2 Splice_Site p.X420_splice 0.43 TCGA-D3-A3C7-06 3 51297745 51297745 C T DOCK3 Silent p.L781L 0.31 TCGA-D3-A3C7-06 3 51370667 51370667 A G DOCK3 Silent p.E1198E 0.29 TCGA-D3-A3C7-06 3 52248117 52248117 C T ALAS1 Missense_Mutation p.P615L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 3 52255454 52255454 C T TLR9 Missense_Mutation p.E1114K 0.35 deleterious(0.01) possibly_damaging(0.82) TCGA-D3-A3C7-06 3 52426985 52426985 C T DNAH1 Missense_Mutation p.S3473F 0.36 probably_damaging(0.998) TCGA-D3-A3C7-06 3 52457136 52457136 C T PHF7 Missense_Mutation p.P317S 0.29 tolerated(0.08) benign(0.011) TCGA-D3-A3C7-06 3 54676196 54676196 C T CACNA2D3 Silent p.I365I 0.68 TCGA-D3-A3C7-06 3 57843838 57843838 C T SLMAP Silent p.L213L 0.61 TCGA-D3-A3C7-06 3 58552279 58552279 C T FAM107A 3'UTR 0.47 TCGA-D3-A3C7-06 3 64587690 64587690 G A ADAMTS9 Missense_Mutation p.P1316L 0.60 tolerated(0.18) benign(0.026) TCGA-D3-A3C7-06 3 81698054 81698054 G A GBE1 Missense_Mutation p.S215F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 3 86115815 86115815 G A CADM2 Missense_Mutation p.G399E 0.40 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C7-06 3 89521711 89521711 G A EPHA3 Missense_Mutation p.E930K 0.36 deleterious(0) benign(0.075) TCGA-D3-A3C7-06 3 95374238 95374238 G A MTHFD2P1 RNA 0.42 TCGA-D3-A3C7-06 3 95374239 95374239 G A MTHFD2P1 RNA 0.42 TCGA-D3-A3C7-06 3 96706601 96706601 C T EPHA6 Missense_Mutation p.S293L 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.31 deleterious(0.01) possibly_damaging(0.595) TCGA-D3-A3C7-06 4 102117259 102117259 G A PPP3CA Missense_Mutation p.P25S 0.50 deleterious(0.05) benign(0.343) TCGA-D3-A3C7-06 4 110745127 110745127 T A GAR1 Missense_Mutation p.F193Y 0.68 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A3C7-06 4 128685492 128685492 G A SLC25A31 Missense_Mutation p.R152Q 0.58 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A3C7-06 4 138453255 138453255 G A PCDH18 5'UTR 0.49 TCGA-D3-A3C7-06 4 141320054 141320054 C T CLGN Missense_Mutation p.D279N 0.51 deleterious(0) probably_damaging(0.911) TCGA-D3-A3C7-06 4 146823846 146823846 A T ZNF827 Missense_Mutation p.F189I 0.59 deleterious(0) probably_damaging(0.993) TCGA-D3-A3C7-06 4 15005680 15005680 C T CPEB2 Silent p.F461F 0.33 TCGA-D3-A3C7-06 4 154626372 154626372 G C TLR2 Silent p.R771R 0.62 TCGA-D3-A3C7-06 4 155219727 155219727 C T DCHS2 Silent p.R1458R 0.63 TCGA-D3-A3C7-06 4 156638326 156638326 G A GUCY1A3 Missense_Mutation p.D530N 0.63 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 4 164247360 164247360 T A NPY1R Missense_Mutation p.N116I 0.56 deleterious(0.01) benign(0.179) TCGA-D3-A3C7-06 4 164247362 164247362 C A NPY1R Missense_Mutation p.L115F 0.53 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A3C7-06 4 1656818 1656818 G A FAM53A Missense_Mutation p.R257W 0.59 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 4 1729447 1729447 C T TACC3 Silent p.I106I 0.29 TCGA-D3-A3C7-06 4 17516864 17516864 C T CLRN2 5'UTR 0.49 TCGA-D3-A3C7-06 4 17805353 17805353 G A DCAF16 Missense_Mutation p.H138Y 0.28 tolerated_low_confidence(0.84) possibly_damaging(0.607) TCGA-D3-A3C7-06 4 1801058 1801058 C T FGFR3 Missense_Mutation p.P63S 0.60 tolerated(0.13) benign(0.012) TCGA-D3-A3C7-06 4 20611774 20611774 T A SLIT2 Silent p.S1277S 0.55 TCGA-D3-A3C7-06 4 25379079 25379079 C T ANAPC4 Silent p.S10S 0.24 TCGA-D3-A3C7-06 4 3129175 3129175 C T HTT Silent p.I529I 0.26 TCGA-D3-A3C7-06 4 40045197 40045197 G A RP11-333E13.4 RNA 0.36 TCGA-D3-A3C7-06 4 40108641 40108641 C T N4BP2 Missense_Mutation p.R499C 0.36 deleterious(0.04) probably_damaging(0.984) TCGA-D3-A3C7-06 4 43032575 43032575 G A GRXCR1 3'UTR 0.45 TCGA-D3-A3C7-06 4 438156 438156 G A ZNF721 Missense_Mutation p.L34F 0.55 tolerated(0.08) benign(0.002) TCGA-D3-A3C7-06 4 48147256 48147256 G A TEC Missense_Mutation p.P437L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 4 71691860 71691860 T C GRSF1 Missense_Mutation p.N413S 0.67 tolerated(0.97) benign(0.058) TCGA-D3-A3C7-06 4 77003118 77003118 G A ART3 Missense_Mutation p.E71K 0.74 tolerated(0.07) possibly_damaging(0.752) TCGA-D3-A3C7-06 4 80246535 80246535 T C NAA11 Missense_Mutation p.K166R 0.67 tolerated(0.06) benign(0.027) TCGA-D3-A3C7-06 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.54 tolerated(0.18) possibly_damaging(0.643) TCGA-D3-A3C7-06 4 85731479 85731479 G A WDFY3 Nonsense_Mutation p.R636* 0.59 TCGA-D3-A3C7-06 4 87724993 87724993 C T PTPN13 Missense_Mutation p.P2218S 0.66 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C7-06 4 88534101 88534101 G A DSPP Missense_Mutation p.E255K 0.62 probably_damaging(0.995) TCGA-D3-A3C7-06 5 108523217 108523217 C T FER Missense_Mutation p.R804C 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 5 110411878 110411878 C T TSLP 3'Flank 0.50 TCGA-D3-A3C7-06 5 112896808 112896808 C T YTHDC2 Missense_Mutation p.R750C 0.20 deleterious(0.01) benign(0.109) TCGA-D3-A3C7-06 5 115336900 115336900 T C AQPEP Missense_Mutation p.L595P 0.32 tolerated(0.14) benign(0.15) TCGA-D3-A3C7-06 5 137223019 137223019 G A MYOT Missense_Mutation p.G481E 0.38 tolerated(0.09) probably_damaging(0.93) TCGA-D3-A3C7-06 5 13780988 13780988 C T DNAH5 Silent p.R2967R 0.47 TCGA-D3-A3C7-06 5 13841889 13841889 G A DNAH5 Missense_Mutation p.S1799L 0.41 possibly_damaging(0.637) TCGA-D3-A3C7-06 5 13891132 13891132 G A DNAH5 Missense_Mutation p.P844S 0.39 possibly_damaging(0.641) TCGA-D3-A3C7-06 5 140075147 140075147 C T HARS2 Missense_Mutation p.H152Y 0.33 deleterious(0) probably_damaging(0.962) TCGA-D3-A3C7-06 5 140209499 140209499 C T PCDHA6 Missense_Mutation p.S608L 0.22 tolerated_low_confidence(0.05) benign(0.411) TCGA-D3-A3C7-06 5 140222071 140222071 C T PCDHA8 Silent p.L389L 0.42 TCGA-D3-A3C7-06 5 140236204 140236204 C T PCDHA10 Missense_Mutation p.P191S 0.45 deleterious_low_confidence(0.04) benign(0.15) TCGA-D3-A3C7-06 5 140236476 140236476 C T PCDHA10 Silent p.S281S 0.36 TCGA-D3-A3C7-06 5 140432091 140432091 G A PCDHB1 Missense_Mutation p.E346K 0.34 deleterious(0.03) benign(0.385) TCGA-D3-A3C7-06 5 140502954 140502954 C T PCDHB4 Silent p.F458F 0.26 TCGA-D3-A3C7-06 5 140517259 140517259 A T PCDHB5 Missense_Mutation p.Y748F 0.35 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-D3-A3C7-06 5 140552862 140552862 G A PCDHB7 Missense_Mutation p.G149E 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-D3-A3C7-06 5 140553921 140553921 C T PCDHB7 Missense_Mutation p.S502F 0.42 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-D3-A3C7-06 5 140718655 140718655 C T PCDHGA2 Silent p.I39I 0.28 TCGA-D3-A3C7-06 5 140750199 140750199 G A PCDHGB3 Missense_Mutation p.E80K 0.33 tolerated(0.08) benign(0.115) TCGA-D3-A3C7-06 5 140769813 140769813 C T PCDHGB4 Missense_Mutation p.P788S 0.27 tolerated(0.2) benign(0.097) TCGA-D3-A3C7-06 5 140774627 140774627 C T PCDHGA8 Silent p.F749F 0.58 TCGA-D3-A3C7-06 5 140803134 140803134 C T PCDHGA11 Silent p.L780L 0.30 TCGA-D3-A3C7-06 5 140811671 140811671 C T PCDHGA12 Missense_Mutation p.P449S 0.17 deleterious_low_confidence(0.03) benign(0.34) TCGA-D3-A3C7-06 5 141248667 141248667 G A PCDH1 Nonsense_Mutation p.Q124* 0.33 TCGA-D3-A3C7-06 5 147019205 147019205 C T JAKMIP2 Missense_Mutation p.R507Q 0.35 deleterious(0) benign(0.165) TCGA-D3-A3C7-06 5 147040616 147040616 G A JAKMIP2 Silent p.I174I 0.38 TCGA-D3-A3C7-06 5 14769104 14769104 G A ANKH Missense_Mutation p.A98V 0.41 tolerated(0.46) benign(0.126) TCGA-D3-A3C7-06 5 148685890 148685890 C T AFAP1L1 Missense_Mutation p.S153L 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 5 150071404 150071404 G A RBM22 Missense_Mutation p.P391L 0.35 tolerated(0.12) benign(0.017) TCGA-D3-A3C7-06 5 150885259 150885259 C T FAT2 Missense_Mutation p.G4306E 0.28 benign(0.114) TCGA-D3-A3C7-06 5 153855395 153855395 G A HAND1 Nonsense_Mutation p.Q207* 0.35 TCGA-D3-A3C7-06 5 154190829 154190829 C T LARP1 Nonsense_Mutation p.R879* 0.32 TCGA-D3-A3C7-06 5 158634789 158634789 T C RNF145 Intron 0.35 TCGA-D3-A3C7-06 5 159822450 159822450 G A C5orf54 Silent p.F16F 0.27 TCGA-D3-A3C7-06 5 160721128 160721128 G A GABRB2 Missense_Mutation p.S500F 0.46 tolerated(0.55) benign(0.178) TCGA-D3-A3C7-06 5 161569269 161569269 C T GABRG2 Missense_Mutation p.S330F 0.42 deleterious(0.01) benign(0.059) TCGA-D3-A3C7-06 5 161580099 161580099 G A GABRG2 Missense_Mutation p.A425T 0.31 tolerated(0.36) benign(0.02) TCGA-D3-A3C7-06 5 169535126 169535126 G A FOXI1 Silent p.R216R 0.36 TCGA-D3-A3C7-06 5 170239061 170239061 C T GABRP Silent p.S374S 0.31 TCGA-D3-A3C7-06 5 170667979 170667979 C T RANBP17 Missense_Mutation p.P824S 0.39 tolerated(0.42) probably_damaging(0.996) TCGA-D3-A3C7-06 5 176084784 176084784 G A TSPAN17 3'UTR 0.20 TCGA-D3-A3C7-06 5 26988458 26988458 G A CDH9 5'UTR 0.47 TCGA-D3-A3C7-06 5 31305377 31305377 G A CDH6 Missense_Mutation p.D366N 0.42 deleterious(0) benign(0.27) TCGA-D3-A3C7-06 5 31313484 31313484 G A CDH6 Missense_Mutation p.G438D 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 5 32058184 32058184 C T PDZD2 Silent p.I725I 0.45 TCGA-D3-A3C7-06 5 35065712 35065712 G A PRLR Silent p.L450L 0.32 TCGA-D3-A3C7-06 5 38406929 38406929 G A EGFLAM Splice_Site p.X277_splice 0.44 TCGA-D3-A3C7-06 5 41019062 41019062 G A MROH2B Missense_Mutation p.R834W 0.21 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C7-06 5 41038872 41038872 G A MROH2B Missense_Mutation p.S727F 0.30 tolerated(0.06) benign(0.02) TCGA-D3-A3C7-06 5 41061769 41061769 G A MROH2B Missense_Mutation p.P173L 0.34 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C7-06 5 41061770 41061770 G A MROH2B Missense_Mutation p.P173S 0.34 tolerated(0.08) probably_damaging(0.943) TCGA-D3-A3C7-06 5 41065470 41065470 G A MROH2B Silent p.F108F 0.31 TCGA-D3-A3C7-06 5 41150037 41150037 C T C6 Missense_Mutation p.S794N 0.35 tolerated(0.74) benign(0.026) TCGA-D3-A3C7-06 5 54281074 54281074 G A ESM1 Missense_Mutation p.P91L 0.37 deleterious(0.01) benign(0.028) TCGA-D3-A3C7-06 5 55110939 55110939 C T DDX4 Silent p.S642S 0.36 TCGA-D3-A3C7-06 5 57750400 57750400 G A PLK2 3'UTR 0.39 TCGA-D3-A3C7-06 5 57790678 57790678 A T GAPT Silent p.G105G 0.45 TCGA-D3-A3C7-06 5 61832575 61832575 T C IPO11 Silent p.G752G 0.43 TCGA-D3-A3C7-06 5 63496695 63496695 C T RNF180 Missense_Mutation p.R21C 0.32 tolerated(0.11) benign(0.194) TCGA-D3-A3C7-06 5 6751215 6751215 C T PAPD7 Missense_Mutation p.P392S 0.29 tolerated_low_confidence(0.26) benign(0.119) TCGA-D3-A3C7-06 5 68665291 68665291 G C TAF9 Intron 0.31 TCGA-D3-A3C7-06 5 70855835 70855835 T A BDP1 Missense_Mutation p.F2423I 0.40 deleterious(0.04) benign(0.367) TCGA-D3-A3C7-06 5 73989524 73989524 T A HEXB Nonsense_Mutation p.L169* 0.47 TCGA-D3-A3C7-06 5 75997022 75997022 G A IQGAP2 Missense_Mutation p.D1497N 0.43 deleterious(0.04) benign(0.194) TCGA-D3-A3C7-06 5 7835598 7835598 G A C5orf49 Missense_Mutation p.S54F 0.41 tolerated(0.15) probably_damaging(0.983) TCGA-D3-A3C7-06 5 79747353 79747353 C T ZFYVE16 Silent p.L1144L 0.40 TCGA-D3-A3C7-06 5 89949088 89949088 C T GPR98 Missense_Mutation p.P1233S 0.27 possibly_damaging(0.857) TCGA-D3-A3C7-06 5 89990185 89990185 T A GPR98 Missense_Mutation p.F2538I 0.32 possibly_damaging(0.879) TCGA-D3-A3C7-06 5 90020993 90020993 G A GPR98 Missense_Mutation p.E3333K 0.21 benign(0.001) TCGA-D3-A3C7-06 5 95728987 95728987 C T PCSK1 Silent p.E660E 0.29 TCGA-D3-A3C7-06 5 95761620 95761620 T C PCSK1 Silent p.E100E 0.45 TCGA-D3-A3C7-06 6 109274487 109274487 C T ARMC2 Silent p.I616I 0.20 TCGA-D3-A3C7-06 6 109274488 109274488 C T ARMC2 Missense_Mutation p.H617Y 0.20 deleterious(0.03) possibly_damaging(0.609) TCGA-D3-A3C7-06 6 110110840 110110840 A C FIG4 Missense_Mutation p.T714P 0.32 deleterious(0.03) benign(0.418) TCGA-D3-A3C7-06 6 110734509 110734509 G A DDO Missense_Mutation p.P81S 0.44 deleterious(0) probably_damaging(0.955) TCGA-D3-A3C7-06 6 110988704 110988704 G A CDK19 Missense_Mutation p.S130F 0.44 deleterious(0) probably_damaging(0.95) TCGA-D3-A3C7-06 6 112671051 112671051 G A RFPL4B Silent p.A47A 0.43 TCGA-D3-A3C7-06 6 116574216 116574216 G A TSPYL4 Missense_Mutation p.S319F 0.31 deleterious(0) probably_damaging(0.975) TCGA-D3-A3C7-06 6 117114369 117114369 G A GPRC6A Missense_Mutation p.P573S 0.43 deleterious(0.02) possibly_damaging(0.778) TCGA-D3-A3C7-06 6 117116901 117116901 G A GPRC6A Missense_Mutation p.P549L 0.33 deleterious(0.02) benign(0.078) TCGA-D3-A3C7-06 6 119569520 119569520 C T MAN1A1 Splice_Site p.X300_splice 0.46 TCGA-D3-A3C7-06 6 12123591 12123591 G A HIVEP1 Missense_Mutation p.R1188Q 0.40 tolerated(0.61) benign(0.004) TCGA-D3-A3C7-06 6 126080650 126080650 G A HEY2 Missense_Mutation p.R239Q 0.34 deleterious(0.01) possibly_damaging(0.734) TCGA-D3-A3C7-06 6 128400043 128400043 C T PTPRK Missense_Mutation p.E600K 0.40 tolerated(0.16) benign(0.08) TCGA-D3-A3C7-06 6 129635813 129635813 G A LAMA2 Missense_Mutation p.G1142D 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 6 130762228 130762228 C T TMEM200A Nonsense_Mutation p.R221* 0.32 TCGA-D3-A3C7-06 6 131277475 131277475 G A EPB41L2 Missense_Mutation p.P51S 0.40 tolerated(0.11) benign(0.002) TCGA-D3-A3C7-06 6 133049906 133049906 C T VNN3 Missense_Mutation p.G171R 0.31 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C7-06 6 133834096 133834096 G A EYA4 Missense_Mutation p.G474E 0.37 deleterious(0) probably_damaging(0.952) TCGA-D3-A3C7-06 6 136597503 136597503 T C BCLAF1 Missense_Mutation p.K387R 0.16 deleterious(0) possibly_damaging(0.486) TCGA-D3-A3C7-06 6 139498230 139498230 C A HECA Silent p.L540L 0.27 TCGA-D3-A3C7-06 6 142409714 142409714 C T NMBR Missense_Mutation p.D28N 0.36 tolerated(0.22) benign(0.001) TCGA-D3-A3C7-06 6 144070141 144070141 C T PHACTR2 Silent p.S78S 0.30 TCGA-D3-A3C7-06 6 150059891 150059891 G A NUP43 Missense_Mutation p.H176Y 0.33 deleterious(0.02) possibly_damaging(0.837) TCGA-D3-A3C7-06 6 160239996 160239996 T A PNLDC1 Missense_Mutation p.Y415N 0.37 tolerated(0.3) benign(0.052) TCGA-D3-A3C7-06 6 161139332 161139332 C T PLG Missense_Mutation p.P265L 0.33 deleterious(0.04) benign(0.005) TCGA-D3-A3C7-06 6 163984665 163984665 T A QKI Nonsense_Mutation p.L283* 0.45 TCGA-D3-A3C7-06 6 167755067 167755067 T A TTLL2 Missense_Mutation p.F560Y 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A3C7-06 6 17292459 17292459 A T RBM24 3'UTR 0.33 TCGA-D3-A3C7-06 6 24653351 24653351 T C TDP2 Missense_Mutation p.M223V 0.40 deleterious(0) possibly_damaging(0.643) TCGA-D3-A3C7-06 6 26108317 26108317 G A HIST1H1T Missense_Mutation p.S2F 0.30 tolerated(0.06) probably_damaging(0.927) TCGA-D3-A3C7-06 6 29054546 29054546 A T OR2B3 Silent p.S160S 0.32 TCGA-D3-A3C7-06 6 29581119 29581119 G A GABBR1 Silent p.G489G 0.38 TCGA-D3-A3C7-06 6 29640508 29640508 C T ZFP57 Silent p.R460R 0.29 TCGA-D3-A3C7-06 6 30860301 30860301 G A DDR1 Missense_Mutation p.E361K 0.28 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C7-06 6 31496962 31496962 G A MCCD1 Silent p.R57R 0.25 TCGA-D3-A3C7-06 6 32017250 32017250 G A TNXB 5'Flank 0.38 TCGA-D3-A3C7-06 6 32038104 32038104 G A TNXB Missense_Mutation p.S1693F 0.34 benign(0.009) TCGA-D3-A3C7-06 6 32063453 32063453 C T TNXB Missense_Mutation p.R726Q 0.38 probably_damaging(0.947) TCGA-D3-A3C7-06 6 33135229 33135229 C T COL11A2 Missense_Mutation p.G1280S 0.44 unknown(0) TCGA-D3-A3C7-06 6 34499429 34499429 G A PACSIN1 Missense_Mutation p.E364K 0.32 tolerated(0.08) benign(0.359) TCGA-D3-A3C7-06 6 35208186 35208186 C T SCUBE3 Missense_Mutation p.H330Y 0.33 deleterious(0) possibly_damaging(0.87) TCGA-D3-A3C7-06 6 35754864 35754864 G A CLPSL1 Silent p.E63E 0.13 TCGA-D3-A3C7-06 6 38843575 38843575 C T DNAH8 Missense_Mutation p.T2393I 0.27 probably_damaging(0.964) TCGA-D3-A3C7-06 6 38843576 38843576 C T DNAH8 Silent p.T2393T 0.27 TCGA-D3-A3C7-06 6 38885135 38885135 G A DNAH8 Missense_Mutation p.D3204N 0.36 possibly_damaging(0.859) TCGA-D3-A3C7-06 6 39040774 39040774 G A GLP1R Missense_Mutation p.G216R 0.30 tolerated(0.5) possibly_damaging(0.815) TCGA-D3-A3C7-06 6 40400449 40400449 T A LRFN2 Missense_Mutation p.Q135L 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 6 43227423 43227423 G A TTBK1 Missense_Mutation p.R468Q 0.56 possibly_damaging(0.594) TCGA-D3-A3C7-06 6 43267668 43267668 G A SLC22A7 Missense_Mutation p.V231M 0.39 tolerated(0.16) possibly_damaging(0.627) TCGA-D3-A3C7-06 6 43479876 43479876 A T YIPF3 3'UTR 0.29 TCGA-D3-A3C7-06 6 44120422 44120422 C T TMEM63B Silent p.I643I 0.44 TCGA-D3-A3C7-06 6 44253959 44253959 G A TCTE1 Silent p.F196F 0.38 TCGA-D3-A3C7-06 6 46874485 46874485 C T GPR116 Silent p.R5R 0.42 TCGA-D3-A3C7-06 6 47754326 47754326 A C OPN5 Missense_Mutation p.E69A 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C7-06 6 52993715 52993715 C T GCM1 Silent p.G200G 0.29 TCGA-D3-A3C7-06 6 52993716 52993716 C T GCM1 Missense_Mutation p.G200E 0.29 tolerated(1) benign(0.001) TCGA-D3-A3C7-06 6 54804969 54804969 C T FAM83B Silent p.L400L 0.41 TCGA-D3-A3C7-06 6 54806277 54806277 G A FAM83B Silent p.S836S 0.28 TCGA-D3-A3C7-06 6 55216368 55216368 G A GFRAL Missense_Mutation p.D230N 0.23 tolerated(0.5) probably_damaging(0.914) TCGA-D3-A3C7-06 6 55223744 55223744 G A GFRAL Missense_Mutation p.E254K 0.27 deleterious(0.02) possibly_damaging(0.756) TCGA-D3-A3C7-06 6 56919312 56919312 G A KIAA1586 Missense_Mutation p.R672Q 0.22 tolerated(0.1) benign(0.002) TCGA-D3-A3C7-06 6 57512661 57512661 G A PRIM2 3'UTR 0.13 TCGA-D3-A3C7-06 6 70070771 70070771 G A BAI3 Silent p.K1202K 0.26 TCGA-D3-A3C7-06 6 70672762 70672762 G A COL19A1 Silent p.K342K 0.40 TCGA-D3-A3C7-06 6 71004230 71004230 G A COL9A1 Silent p.S112S 0.33 TCGA-D3-A3C7-06 6 74155359 74155359 G A MB21D1 Missense_Mutation p.P257S 0.45 deleterious(0.02) benign(0.305) TCGA-D3-A3C7-06 6 86197192 86197192 G A NT5E Silent p.L363L 0.39 TCGA-D3-A3C7-06 6 87964629 87964629 T C ZNF292 Silent p.L428L 0.39 TCGA-D3-A3C7-06 6 90380733 90380733 C T MDN1 Missense_Mutation p.V4621I 0.27 benign(0.009) TCGA-D3-A3C7-06 6 90385895 90385895 C T MDN1 Missense_Mutation p.G4191R 0.34 probably_damaging(0.982) TCGA-D3-A3C7-06 6 94120121 94120121 G A EPHA7 Intron 0.43 TCGA-D3-A3C7-06 6 97339125 97339127 AGC GG NDUFAF4 Frame_Shift_Del p.K127Nfs*12 0.21 TCGA-D3-A3C7-06 7 102738832 102738832 G A ARMC10 Silent p.K288K 0.14 TCGA-D3-A3C7-06 7 103276823 103276823 G A RELN Missense_Mutation p.S721F 0.48 deleterious(0.04) possibly_damaging(0.877) TCGA-D3-A3C7-06 7 107434305 107434305 C T SLC26A3 Silent p.K51K 0.50 TCGA-D3-A3C7-06 7 113517931 113517931 G A PPP1R3A Silent p.T1072T 0.55 TCGA-D3-A3C7-06 7 120911459 120911459 G A CPED1 Missense_Mutation p.G948E 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 7 123302262 123302262 A T LMOD2 Missense_Mutation p.S208C 0.20 tolerated(0.07) benign(0.376) TCGA-D3-A3C7-06 7 127958082 127958082 G A RBM28 Silent p.F547F 0.20 TCGA-D3-A3C7-06 7 133943058 133943058 C T LRGUK Missense_Mutation p.P750S 0.53 tolerated(0.49) benign(0.066) TCGA-D3-A3C7-06 7 138262304 138262304 G A TRIM24 Missense_Mutation p.E743K 0.15 deleterious(0) benign(0.387) TCGA-D3-A3C7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.55 deleterious(0) probably_damaging(0.967) TCGA-D3-A3C7-06 7 142176473 142176473 G A TRBV7-4 Missense_Mutation p.S68F 0.31 tolerated(1) benign(0) TCGA-D3-A3C7-06 7 142459672 142459672 G A PRSS1 Missense_Mutation p.G83E 0.22 deleterious(0.02) possibly_damaging(0.646) TCGA-D3-A3C7-06 7 143175718 143175718 C T TAS2R41 Silent p.I251I 0.43 TCGA-D3-A3C7-06 7 144015578 144015578 C T OR2A1 Missense_Mutation p.R121C 0.13 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C7-06 7 144062460 144062460 C T ARHGEF5 Missense_Mutation p.P900S 0.24 deleterious(0.03) probably_damaging(1) TCGA-D3-A3C7-06 7 144150682 144150682 C T TPK1 Missense_Mutation p.E230K 0.62 deleterious(0.05) benign(0.026) TCGA-D3-A3C7-06 7 146805346 146805346 G A CNTNAP2 Missense_Mutation p.E220K 0.26 tolerated(0.11) benign(0.133) TCGA-D3-A3C7-06 7 147914545 147914545 A C CNTNAP2 Missense_Mutation p.K1059T 0.50 tolerated(0.07) benign(0.021) TCGA-D3-A3C7-06 7 149317098 149317098 G A ZNF767 RNA 0.33 TCGA-D3-A3C7-06 7 149486750 149486750 C T SSPO RNA 0.55 TCGA-D3-A3C7-06 7 150558262 150558262 C T AOC1 Missense_Mutation p.P741S 0.25 deleterious(0.04) benign(0.077) TCGA-D3-A3C7-06 7 150558263 150558263 C T AOC1 Missense_Mutation p.P741L 0.26 deleterious(0) possibly_damaging(0.774) TCGA-D3-A3C7-06 7 150696062 150696062 G A NOS3 Missense_Mutation p.G282E 0.30 tolerated(0.27) benign(0.221) TCGA-D3-A3C7-06 7 154876080 154876080 G A HTR5A Nonsense_Mutation p.W319* 0.55 TCGA-D3-A3C7-06 7 157985162 157985162 C T PTPRN2 Missense_Mutation p.E136K 0.58 tolerated(0.2) benign(0.004) TCGA-D3-A3C7-06 7 18066477 18066477 G A PRPS1L1 Missense_Mutation p.S310F 0.52 deleterious(0.02) benign(0.037) TCGA-D3-A3C7-06 7 18669046 18669046 C T HDAC9 Silent p.L246L 0.55 TCGA-D3-A3C7-06 7 18705909 18705909 G A HDAC9 Missense_Mutation p.G514E 0.22 tolerated(1) benign(0.044) TCGA-D3-A3C7-06 7 21628202 21628202 G A DNAH11 Missense_Mutation p.V641I 0.58 benign(0.007) TCGA-D3-A3C7-06 7 21628203 21628203 T A DNAH11 Missense_Mutation p.V641D 0.59 possibly_damaging(0.694) TCGA-D3-A3C7-06 7 21630843 21630843 A T DNAH11 Missense_Mutation p.K772I 0.59 possibly_damaging(0.642) TCGA-D3-A3C7-06 7 23391174 23391174 C G IGF2BP3 Missense_Mutation p.E145Q 0.42 deleterious(0.02) possibly_damaging(0.588) TCGA-D3-A3C7-06 7 23391184 23391184 T A IGF2BP3 Silent p.G141G 0.38 TCGA-D3-A3C7-06 7 30921964 30921964 C T FAM188B Missense_Mutation p.R714W 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 7 34851447 34851447 C T NPSR1 Silent p.I150I 0.52 TCGA-D3-A3C7-06 7 35244129 35244129 C T TBX20 Missense_Mutation p.G319E 0.25 tolerated(0.1) benign(0) TCGA-D3-A3C7-06 7 4050701 4050701 G A SDK1 Silent p.A745A 0.23 TCGA-D3-A3C7-06 7 45005329 45005329 C T MYO1G Missense_Mutation p.R763K 0.29 tolerated(0.62) benign(0.331) TCGA-D3-A3C7-06 7 47694908 47694908 G A C7orf65 Missense_Mutation p.G11E 0.21 tolerated_low_confidence(0.24) probably_damaging(0.969) TCGA-D3-A3C7-06 7 47882569 47882569 C T PKD1L1 Silent p.L1812L 0.25 TCGA-D3-A3C7-06 7 47894550 47894550 C T PKD1L1 Missense_Mutation p.E1597K 0.29 deleterious(0) possibly_damaging(0.827) TCGA-D3-A3C7-06 7 48308582 48308582 C T ABCA13 Missense_Mutation p.P671S 0.57 benign(0) TCGA-D3-A3C7-06 7 4830963 4830963 C T AP5Z1 Silent p.L791L 0.42 TCGA-D3-A3C7-06 7 4946935 4946935 G A MMD2 3'UTR 0.53 TCGA-D3-A3C7-06 7 50070802 50070802 A T ZPBP Missense_Mutation p.L198I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3C7-06 7 5103441 5103441 T C RBAK Silent p.F118F 0.47 TCGA-D3-A3C7-06 7 57188644 57188644 G A ZNF479 Missense_Mutation p.H160Y 0.42 tolerated(0.1) benign(0.028) TCGA-D3-A3C7-06 7 57188759 57188759 C T ZNF479 Silent p.E121E 0.43 TCGA-D3-A3C7-06 7 62752480 62752480 C T ZNF733P RNA 0.30 TCGA-D3-A3C7-06 7 63726795 63726795 C T ZNF679 Missense_Mutation p.H262Y 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A3C7-06 7 66273942 66273942 C A KCTD7 Missense_Mutation p.R383S 0.35 tolerated(0.17) benign(0.022) TCGA-D3-A3C7-06 7 72413513 72413513 C T POM121 Missense_Mutation p.S729F 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 7 72413539 72413539 C T POM121 Missense_Mutation p.P738S 0.21 tolerated(0.13) benign(0.136) TCGA-D3-A3C7-06 7 73012022 73012022 G A MLXIPL Missense_Mutation p.P365S 0.46 tolerated(0.22) benign(0.034) TCGA-D3-A3C7-06 7 73184200 73184200 C T CLDN3 Silent p.Q60Q 0.28 TCGA-D3-A3C7-06 7 76908140 76908140 A T CCDC146 Missense_Mutation p.K504N 0.34 tolerated(0.15) benign(0.008) TCGA-D3-A3C7-06 7 77708295 77708295 G A MAGI2 Silent p.L1225L 0.35 TCGA-D3-A3C7-06 7 8125850 8125850 C T GLCCI1 Silent p.L442L 0.22 TCGA-D3-A3C7-06 7 82475907 82475907 C T PCLO Missense_Mutation p.E4603K 0.29 unknown(0) TCGA-D3-A3C7-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.55 unknown(0) TCGA-D3-A3C7-06 7 82584970 82584970 A C PCLO Missense_Mutation p.L1767V 0.22 unknown(0) TCGA-D3-A3C7-06 7 82585451 82585451 C T PCLO Silent p.G1606G 0.25 TCGA-D3-A3C7-06 7 82785303 82785303 C T PCLO Silent p.P218P 0.58 TCGA-D3-A3C7-06 7 87175237 87175237 C T ABCB1 Missense_Mutation p.G610E 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 7 872193 872193 C T SUN1 Missense_Mutation p.P11L 0.47 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C7-06 7 91641942 91641942 A G AKAP9 Missense_Mutation p.K1173R 0.56 probably_damaging(0.987) TCGA-D3-A3C7-06 7 92098569 92098569 G T ERVW-1 Missense_Mutation p.A376E 0.22 deleterious(0) probably_damaging(0.993) TCGA-D3-A3C7-06 7 99221679 99221679 G A ZSCAN25 Splice_Site p.X228_splice 0.32 TCGA-D3-A3C7-06 7 99489773 99489773 G A TRIM4 3'UTR 0.65 TCGA-D3-A3C7-06 8 101146071 101146071 G A FBXO43 Missense_Mutation p.P696S 0.48 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C7-06 8 104831701 104831701 G A RIMS2 Intron 0.35 TCGA-D3-A3C7-06 8 105405064 105405064 G A DPYS Missense_Mutation p.P464L 0.30 deleterious(0) benign(0.185) TCGA-D3-A3C7-06 8 107773671 107773671 C T ABRA Missense_Mutation p.G247E 0.35 deleterious(0.04) benign(0.089) TCGA-D3-A3C7-06 8 110464981 110464981 C T PKHD1L1 Missense_Mutation p.S2181F 0.42 deleterious(0) probably_damaging(0.972) TCGA-D3-A3C7-06 8 113348946 113348946 C T CSMD3 Silent p.G2318G 0.41 TCGA-D3-A3C7-06 8 11415549 11415549 T C BLK Splice_Site p.X343_splice 0.63 TCGA-D3-A3C7-06 8 116616459 116616459 G A TRPS1 Silent p.F579F 0.43 TCGA-D3-A3C7-06 8 120608147 120608147 C T ENPP2 Silent p.K356K 0.36 TCGA-D3-A3C7-06 8 124515590 124515590 G A FBXO32 3'UTR 0.35 TCGA-D3-A3C7-06 8 124658106 124658106 G A KLHL38 Missense_Mutation p.S540F 0.33 deleterious(0.01) benign(0.141) TCGA-D3-A3C7-06 8 124790922 124790922 C T FAM91A1 Silent p.A153A 0.39 TCGA-D3-A3C7-06 8 134232969 134232969 C A WISP1 Silent p.L165L 0.43 TCGA-D3-A3C7-06 8 139165229 139165229 C T FAM135B Missense_Mutation p.E497K 0.42 tolerated(0.25) benign(0.001) TCGA-D3-A3C7-06 8 139263157 139263157 C T FAM135B Missense_Mutation p.D157N 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 8 143570778 143570778 C T BAI1 Silent p.I870I 0.43 TCGA-D3-A3C7-06 8 144332163 144332163 C T ZFP41 Silent p.P50P 0.48 TCGA-D3-A3C7-06 8 144810890 144810890 G A FAM83H Silent p.F247F 0.32 TCGA-D3-A3C7-06 8 144941698 144941698 C T EPPK1 Silent p.R1908R 0.50 TCGA-D3-A3C7-06 8 145001455 145001455 G A PLEC Nonsense_Mutation p.Q1406* 0.30 TCGA-D3-A3C7-06 8 1624744 1624744 G T DLGAP2 Nonsense_Mutation p.E670* 0.70 TCGA-D3-A3C7-06 8 21986541 21986541 G A HR Missense_Mutation p.P48L 0.32 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-D3-A3C7-06 8 21986542 21986542 G A HR Missense_Mutation p.P48S 0.33 deleterious_low_confidence(0.03) benign(0.323) TCGA-D3-A3C7-06 8 27327415 27327415 C T CHRNA2 Missense_Mutation p.G53S 0.36 tolerated(1) benign(0.003) TCGA-D3-A3C7-06 8 29023289 29023289 C T KIF13B Missense_Mutation p.A387T 0.27 tolerated(0.21) benign(0.037) TCGA-D3-A3C7-06 8 30511065 30511065 A T GTF2E2 Silent p.L17L 0.38 TCGA-D3-A3C7-06 8 36793288 36793288 T A KCNU1 Silent p.S1100S 0.32 TCGA-D3-A3C7-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.38 TCGA-D3-A3C7-06 8 41791374 41791374 G A KAT6A Missense_Mutation p.T1455I 0.30 unknown(0) TCGA-D3-A3C7-06 8 42175288 42175288 C T IKBKB Silent p.I413I 0.29 TCGA-D3-A3C7-06 8 68255621 68255621 G A ARFGEF1 5'UTR 0.54 TCGA-D3-A3C7-06 8 68419059 68419059 C T CPA6 Nonsense_Mutation p.W200* 0.41 TCGA-D3-A3C7-06 8 77767758 77767758 T A ZFHX4 Silent p.S2867S 0.32 TCGA-D3-A3C7-06 8 89053655 89053655 C T MMP16 3'UTR 0.33 TCGA-D3-A3C7-06 8 95183151 95183151 G A CDH17 Silent p.F282F 0.36 TCGA-D3-A3C7-06 8 95186178 95186178 C T CDH17 Silent p.V210V 0.43 TCGA-D3-A3C7-06 8 95653669 95653669 C T ESRP1 Silent p.A41A 0.41 TCGA-D3-A3C7-06 8 9588486 9588486 C T TNKS Silent p.R696R 0.63 TCGA-D3-A3C7-06 8 99102037 99102037 G A C8orf47 Silent p.E264E 0.55 TCGA-D3-A3C7-06 9 100897142 100897142 C T CORO2A Silent p.V138V 0.56 TCGA-D3-A3C7-06 9 107367211 107367211 C T OR13C2 Missense_Mutation p.G233E 0.77 deleterious(0.02) benign(0.257) TCGA-D3-A3C7-06 9 113192603 113192603 G A SVEP1 Silent p.I1827I 0.65 TCGA-D3-A3C7-06 9 114508622 114508622 C T C9orf84 Missense_Mutation p.G260E 0.64 tolerated(0.99) benign(0.015) TCGA-D3-A3C7-06 9 118162656 118162656 G A DEC1 Nonsense_Mutation p.W11* 0.54 TCGA-D3-A3C7-06 9 118163567 118163567 G A DEC1 Silent p.R61R 0.69 TCGA-D3-A3C7-06 9 123215998 123215998 G A CDK5RAP2 Silent p.S843S 0.58 TCGA-D3-A3C7-06 9 130670630 130670630 G A ST6GALNAC4 3'UTR 0.38 TCGA-D3-A3C7-06 9 131198100 131198100 C T CERCAM Silent p.S568S 0.58 TCGA-D3-A3C7-06 9 135750555 135750555 G A AK8 Missense_Mutation p.P39L 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 9 135919250 135919250 C T GTF3C5 Missense_Mutation p.P170L 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 9 136259421 136259421 C T C9orf96 Missense_Mutation p.P196L 0.52 deleterious(0) possibly_damaging(0.898) TCGA-D3-A3C7-06 9 139815663 139815663 C T TRAF2 Silent p.S378S 0.65 TCGA-D3-A3C7-06 9 140126205 140126205 G A SLC34A3 Silent p.A17A 0.60 TCGA-D3-A3C7-06 9 140126206 140126206 G A SLC34A3 Missense_Mutation p.V18I 0.62 tolerated(0.23) benign(0.001) TCGA-D3-A3C7-06 9 140991008 140991008 C T CACNA1B Missense_Mutation p.P1723S 0.74 deleterious(0.02) benign(0.341) TCGA-D3-A3C7-06 9 14857659 14857659 G A FREM1 Silent p.F240F 0.53 TCGA-D3-A3C7-06 9 21409388 21409388 C T IFNA8 Silent p.F71F 0.59 TCGA-D3-A3C7-06 9 32632764 32632764 G A TAF1L Silent p.F938F 0.67 TCGA-D3-A3C7-06 9 35091524 35091524 G A PIGO Missense_Mutation p.P787L 0.62 tolerated(0.56) benign(0.302) TCGA-D3-A3C7-06 9 36170052 36170052 C T CCIN Missense_Mutation p.R185C 0.68 deleterious(0.01) possibly_damaging(0.806) TCGA-D3-A3C7-06 9 39171442 39171442 G A CNTNAP3 Silent p.F419F 0.68 TCGA-D3-A3C7-06 9 72471531 72471531 G A C9orf135 Missense_Mutation p.E108K 0.57 tolerated(0.18) benign(0.015) TCGA-D3-A3C7-06 9 77343228 77343228 C A TRPM6 Missense_Mutation p.L1954F 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 9 85640753 85640753 T C RASEF Missense_Mutation p.N172S 0.60 tolerated(0.09) probably_damaging(0.996) TCGA-D3-A3C7-06 9 94488852 94488852 C T ROR2 Missense_Mutation p.E453K 0.53 deleterious(0.02) possibly_damaging(0.881) TCGA-D3-A3C7-06 9 98231211 98231211 G A PTCH1 Missense_Mutation p.T691I 0.61 tolerated(0.33) benign(0.016) TCGA-D3-A3C7-06 X 100349697 100349697 C T TMEM35 Missense_Mutation p.P86S 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A3C7-06 X 100349720 100349720 C T TMEM35 Silent p.F93F 0.37 TCGA-D3-A3C7-06 X 100387404 100387404 C T CENPI Missense_Mutation p.H477Y 0.22 deleterious(0.04) benign(0.033) TCGA-D3-A3C7-06 X 100490968 100490968 G A DRP2 Missense_Mutation p.M79I 0.29 deleterious(0.02) probably_damaging(0.942) TCGA-D3-A3C7-06 X 10096186 10096186 C T WWC3 Silent p.S755S 0.37 TCGA-D3-A3C7-06 X 101909676 101909676 C T GPRASP1 Missense_Mutation p.P279S 0.39 tolerated(0.15) benign(0.004) TCGA-D3-A3C7-06 X 102864578 102864578 G A TCEAL3 Missense_Mutation p.D196N 0.33 deleterious(0.04) benign(0.039) TCGA-D3-A3C7-06 X 105150462 105150462 C T NRK Missense_Mutation p.R301C 0.40 deleterious(0) possibly_damaging(0.651) TCGA-D3-A3C7-06 X 106186394 106186394 C T MORC4 Missense_Mutation p.R576Q 0.34 tolerated(0.05) probably_damaging(0.926) TCGA-D3-A3C7-06 X 106957890 106957890 G A TSC22D3 Silent p.S154S 0.33 TCGA-D3-A3C7-06 X 110951410 110951410 C T ALG13 Missense_Mutation p.P180L 0.22 tolerated_low_confidence(0.21) benign(0.001) TCGA-D3-A3C7-06 X 11160413 11160413 C T ARHGAP6 Missense_Mutation p.D733N 0.31 tolerated_low_confidence(1) benign(0) TCGA-D3-A3C7-06 X 111698523 111698523 T C ZCCHC16 Silent p.A189A 0.35 TCGA-D3-A3C7-06 X 114242621 114242621 C T IL13RA2 Missense_Mutation p.E291K 0.36 deleterious(0.01) benign(0.37) TCGA-D3-A3C7-06 X 114422878 114422878 G A LRCH2 Silent p.P135P 0.46 TCGA-D3-A3C7-06 X 118763465 118763465 C T SEPT6 Missense_Mutation p.E366K 0.40 tolerated(0.64) probably_damaging(0.988) TCGA-D3-A3C7-06 X 118977163 118977163 C T UPF3B Missense_Mutation p.E191K 0.33 deleterious(0) probably_damaging(0.976) TCGA-D3-A3C7-06 X 123195717 123195717 G A STAG2 Missense_Mutation p.G544E 0.33 deleterious(0.01) possibly_damaging(0.541) TCGA-D3-A3C7-06 X 128946754 128946754 G A ZDHHC9 Silent p.V239V 0.42 TCGA-D3-A3C7-06 X 130419413 130419413 A T IGSF1 Missense_Mutation p.I136N 0.38 deleterious(0.01) possibly_damaging(0.84) TCGA-D3-A3C7-06 X 135104756 135104756 C T SLC9A6 Silent p.F454F 0.34 TCGA-D3-A3C7-06 X 135288748 135288748 G A FHL1 Splice_Site p.X52_splice 0.36 TCGA-D3-A3C7-06 X 135430106 135430106 C T GPR112 Missense_Mutation p.S1414L 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C7-06 X 135862953 135862953 A C ARHGEF6 Missense_Mutation p.F30C 0.34 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A3C7-06 X 13792655 13792655 T A GPM6B Intron 0.31 TCGA-D3-A3C7-06 X 138669893 138669893 G A MCF2 Missense_Mutation p.S911F 0.35 deleterious(0.04) benign(0.012) TCGA-D3-A3C7-06 X 144337235 144337235 G A SPANXN1 Silent p.L40L 0.34 TCGA-D3-A3C7-06 X 1471298 1471298 G A IL3RA Missense_Mutation p.R172Q 0.34 tolerated(0.51) benign(0.023) TCGA-D3-A3C7-06 X 148584859 148584859 C T IDS Missense_Mutation p.G134E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A3C7-06 X 151128157 151128157 C T GABRE Intron 0.37 TCGA-D3-A3C7-06 X 151303812 151303812 G A MAGEA10 Missense_Mutation p.P94L 0.28 deleterious(0.01) benign(0.135) TCGA-D3-A3C7-06 X 151870354 151870354 G T MAGEA6 3'UTR 0.36 TCGA-D3-A3C7-06 X 152835063 152835063 G A ATP2B3 Intron 0.28 TCGA-D3-A3C7-06 X 152835064 152835064 G T ATP2B3 Intron 0.29 TCGA-D3-A3C7-06 X 153278809 153278809 G A IRAK1 Missense_Mutation p.P539S 0.50 tolerated(0.19) benign(0.057) TCGA-D3-A3C7-06 X 153694496 153694496 C T PLXNA3 Silent p.I894I 0.46 TCGA-D3-A3C7-06 X 153908454 153908454 A T GAB3 Nonsense_Mutation p.Y534* 0.35 TCGA-D3-A3C7-06 X 154456711 154456711 C T VBP1 Silent p.L111L 0.32 TCGA-D3-A3C7-06 X 17743841 17743841 G A NHS Missense_Mutation p.E518K 0.35 tolerated(0.09) possibly_damaging(0.693) TCGA-D3-A3C7-06 X 19042051 19042051 G A GPR64 Silent p.N162N 0.36 TCGA-D3-A3C7-06 X 26212306 26212306 C T MAGEB6 Missense_Mutation p.P115S 0.34 deleterious(0.05) benign(0.06) TCGA-D3-A3C7-06 X 30577511 30577511 G A CXorf21 3'UTR 0.40 TCGA-D3-A3C7-06 X 31089734 31089734 G A FTHL17 Nonsense_Mutation p.Q113* 0.41 TCGA-D3-A3C7-06 X 3228042 3228042 C T MXRA5 Silent p.R2734R 0.36 TCGA-D3-A3C7-06 X 3238523 3238523 T A MXRA5 Missense_Mutation p.N1735Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 X 3241849 3241849 G A MXRA5 Missense_Mutation p.S626L 0.41 deleterious(0) probably_damaging(0.951) TCGA-D3-A3C7-06 X 3248289 3248289 C T MXRA5 Missense_Mutation p.G160E 0.35 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C7-06 X 34148503 34148503 A T FAM47A Missense_Mutation p.F631L 0.41 tolerated(0.22) probably_damaging(0.916) TCGA-D3-A3C7-06 X 35820931 35820931 G A MAGEB16 Silent p.L206L 0.37 TCGA-D3-A3C7-06 X 38128894 38128894 G A TM4SF2 Intron 0.29 TCGA-D3-A3C7-06 X 41088904 41088904 C T USP9X Missense_Mutation p.P2435S 0.38 tolerated(0.59) benign(0.09) TCGA-D3-A3C7-06 X 41782287 41782287 G A CASK 5'Flank 0.31 TCGA-D3-A3C7-06 X 43661466 43661466 C T MAOB Nonsense_Mutation p.W143* 0.33 TCGA-D3-A3C7-06 X 46521567 46521567 C T SLC9A7 Missense_Mutation p.G309R 0.23 tolerated(0.06) possibly_damaging(0.885) TCGA-D3-A3C7-06 X 46913781 46913781 G A JADE3 Silent p.Q398Q 0.33 TCGA-D3-A3C7-06 X 47426163 47426163 A T ARAF Missense_Mutation p.D228V 0.39 tolerated(0.07) benign(0.308) TCGA-D3-A3C7-06 X 48542280 48542280 G A WAS Missense_Mutation p.R13Q 0.30 deleterious(0.03) unknown(0) TCGA-D3-A3C7-06 X 49034474 49034474 G A PRICKLE3 Missense_Mutation p.H275Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 X 49081431 49081431 A G CACNA1F Silent p.L568L 0.40 TCGA-D3-A3C7-06 X 49955652 49955652 C T AKAP4 Missense_Mutation p.G839E 0.23 deleterious(0) probably_damaging(0.991) TCGA-D3-A3C7-06 X 49958744 49958744 G A AKAP4 Missense_Mutation p.S207F 0.39 tolerated(0.07) possibly_damaging(0.58) TCGA-D3-A3C7-06 X 50376200 50376200 T A SHROOM4 Missense_Mutation p.K958I 0.35 deleterious(0.02) possibly_damaging(0.83) TCGA-D3-A3C7-06 X 50376392 50376392 C T SHROOM4 Missense_Mutation p.G894E 0.38 tolerated(0.12) probably_damaging(0.992) TCGA-D3-A3C7-06 X 51487254 51487254 G A GSPT2 Missense_Mutation p.E178K 0.17 tolerated(0.25) benign(0.005) TCGA-D3-A3C7-06 X 53575230 53575230 A T HUWE1 Missense_Mutation p.F3347Y 0.33 benign(0.153) TCGA-D3-A3C7-06 X 62569899 62569899 A T SPIN4 3'UTR 0.26 TCGA-D3-A3C7-06 X 62875602 62875602 C T ARHGEF9 Missense_Mutation p.D358N 0.35 tolerated(0.3) benign(0.177) TCGA-D3-A3C7-06 X 70148084 70148084 C T SLC7A3 Missense_Mutation p.G244E 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A3C7-06 X 70338619 70338619 G A MED12 Silent p.G5G 0.67 TCGA-D3-A3C7-06 X 70779460 70779460 C T OGT Missense_Mutation p.P595L 0.24 deleterious(0.02) benign(0.029) TCGA-D3-A3C7-06 X 71427528 71427528 C T ERCC6L Silent p.R363R 0.32 TCGA-D3-A3C7-06 X 71840728 71840728 G A PHKA1 Missense_Mutation p.R662C 0.21 deleterious(0) possibly_damaging(0.806) TCGA-D3-A3C7-06 X 73812727 73812727 T A RLIM Silent p.I141I 0.37 TCGA-D3-A3C7-06 X 74494208 74494208 G A UPRT Missense_Mutation p.G40E 0.19 tolerated_low_confidence(0.13) benign(0.049) TCGA-D3-A3C7-06 X 75397606 75397606 A G PBDC1 Missense_Mutation p.N189D 0.39 tolerated_low_confidence(0.35) benign(0) TCGA-D3-A3C7-06 X 75649713 75649713 G T MAGEE1 Missense_Mutation p.D464Y 0.31 deleterious(0) possibly_damaging(0.456) TCGA-D3-A3C7-06 X 77393565 77393565 T A TAF9B Missense_Mutation p.K55I 0.38 deleterious(0) benign(0.309) TCGA-D3-A3C7-06 X 77913641 77913641 C T ZCCHC5 Missense_Mutation p.D93N 0.30 tolerated_low_confidence(0.14) benign(0.01) TCGA-D3-A3C7-06 X 78011169 78011169 T C LPAR4 Missense_Mutation p.V268A 0.37 tolerated(0.48) benign(0.103) TCGA-D3-A3C7-06 X 79937548 79937548 G A BRWD3 Silent p.D1481D 0.34 TCGA-D3-A3C7-06 X 80532515 80532515 C T SH3BGRL Silent p.F26F 0.26 TCGA-D3-A3C7-06 X 84349220 84349220 C T SATL1 Missense_Mutation p.G597E 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C7-06 X 8997363 8997363 T A FAM9B Missense_Mutation p.E126D 0.59 tolerated_low_confidence(0.23) benign(0.178) TCGA-D3-A3C7-06 X 91090558 91090558 T C PCDH11X Missense_Mutation p.F19L 0.37 tolerated(0.78) benign(0.006) TCGA-D3-A3C7-06 X 9900704 9900704 G A SHROOM2 Silent p.P1127P 0.34 TCGA-D3-A3C7-06 X 9900726 9900726 G A SHROOM2 Missense_Mutation p.G1135R 0.30 tolerated(0.54) benign(0.07) TCGA-D3-A3C8-06 10 102296354 102296354 G A HIF1AN Missense_Mutation p.E122K 0.14 tolerated(0.17) benign(0.104) TCGA-D3-A3C8-06 10 102749612 102749612 C T C10orf2 Silent p.F485F 0.09 TCGA-D3-A3C8-06 10 104416936 104416936 C T TRIM8 Missense_Mutation p.P494L 0.12 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-D3-A3C8-06 10 105815129 105815129 C T COL17A1 Splice_Site p.X573_splice 0.11 TCGA-D3-A3C8-06 10 114136199 114136199 C T ACSL5 Silent p.P44P 0.10 TCGA-D3-A3C8-06 10 114136200 114136200 T C ACSL5 Missense_Mutation p.S45P 0.10 deleterious_low_confidence(0.01) benign(0.045) TCGA-D3-A3C8-06 10 117849293 117849293 C T GFRA1 Missense_Mutation p.E386K 0.16 tolerated(0.66) benign(0.116) TCGA-D3-A3C8-06 10 11971937 11971937 G A UPF2 Missense_Mutation p.R1246C 0.12 deleterious(0.02) benign(0.001) TCGA-D3-A3C8-06 10 122334721 122334721 A G PPAPDC1A Missense_Mutation p.K175R 0.14 tolerated(0.7) benign(0.009) TCGA-D3-A3C8-06 10 123256058 123256058 C A FGFR2 Missense_Mutation p.L618F 0.09 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C8-06 10 124339122 124339122 G A DMBT1 Silent p.L236L 0.09 TCGA-D3-A3C8-06 10 124358479 124358479 G A DMBT1 Missense_Mutation p.G1049D 0.08 deleterious(0.04) unknown(0) TCGA-D3-A3C8-06 10 124457257 124457257 G A C10orf120 Missense_Mutation p.H334Y 0.11 tolerated_low_confidence(0.17) benign(0.271) TCGA-D3-A3C8-06 10 135346211 135346211 C T CYP2E1 Missense_Mutation p.P222S 0.11 tolerated(0.21) benign(0.006) TCGA-D3-A3C8-06 10 15573084 15573084 C T ITGA8 Missense_Mutation p.D983N 0.11 tolerated(1) benign(0.066) TCGA-D3-A3C8-06 10 21098760 21098760 C T NEBL Silent p.Q862Q 0.13 TCGA-D3-A3C8-06 10 25279481 25279481 G T ENKUR Missense_Mutation p.Q169K 0.08 deleterious(0.03) possibly_damaging(0.728) TCGA-D3-A3C8-06 10 27964240 27964240 C T MKX Missense_Mutation p.G326E 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.617) TCGA-D3-A3C8-06 10 27964465 27964465 G A MKX Missense_Mutation p.S286F 0.16 tolerated(0.68) benign(0.133) TCGA-D3-A3C8-06 10 43288439 43288439 C T BMS1 Silent p.F312F 0.10 TCGA-D3-A3C8-06 10 44053048 44053048 C T ZNF239 Nonsense_Mutation p.W160* 0.12 TCGA-D3-A3C8-06 10 49420116 49420116 A G FRMPD2 Missense_Mutation p.Y498H 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 10 50315758 50315758 G A VSTM4 Missense_Mutation p.S113F 0.17 tolerated(0.41) benign(0.406) TCGA-D3-A3C8-06 10 54530441 54530441 C T MBL2 Missense_Mutation p.G98E 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A3C8-06 10 55582867 55582867 G A PCDH15 Missense_Mutation p.S1542L 0.08 tolerated_low_confidence(0.54) benign(0.002) TCGA-D3-A3C8-06 10 55719499 55719499 C T PCDH15 Missense_Mutation p.E1039K 0.16 tolerated(0.05) possibly_damaging(0.644) TCGA-D3-A3C8-06 10 55996643 55996643 G A PCDH15 Nonsense_Mutation p.Q309* 0.10 TCGA-D3-A3C8-06 10 5948022 5948022 C T FBXO18 Silent p.I111I 0.10 TCGA-D3-A3C8-06 10 61112165 61112165 C T FAM13C Nonsense_Mutation p.W63* 0.13 TCGA-D3-A3C8-06 10 61829548 61829548 G A ANK3 Silent p.S3697S 0.16 TCGA-D3-A3C8-06 10 61830309 61830309 C T ANK3 Missense_Mutation p.D3444N 0.11 probably_damaging(0.977) TCGA-D3-A3C8-06 10 61831386 61831386 C T ANK3 Missense_Mutation p.G3085R 0.09 probably_damaging(0.998) TCGA-D3-A3C8-06 10 61832672 61832672 C T ANK3 Missense_Mutation p.G2656E 0.13 benign(0.021) TCGA-D3-A3C8-06 10 62648405 62648405 G A RHOBTB1 Missense_Mutation p.P341S 0.15 tolerated(0.97) benign(0.002) TCGA-D3-A3C8-06 10 68687279 68687279 C T LRRTM3 Missense_Mutation p.A202V 0.12 tolerated(0.07) possibly_damaging(0.685) TCGA-D3-A3C8-06 10 72360277 72360277 C T PRF1 Missense_Mutation p.D128N 0.15 tolerated(0.18) benign(0.059) TCGA-D3-A3C8-06 10 75302868 75302868 G A USP54 Missense_Mutation p.H133Y 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3C8-06 10 88939874 88939874 C T FAM35A Missense_Mutation p.P669L 0.10 tolerated(0.32) benign(0.306) TCGA-D3-A3C8-06 10 90983485 90983485 G A LIPA Missense_Mutation p.L260F 0.11 tolerated(0.75) benign(0.033) TCGA-D3-A3C8-06 10 91222168 91222168 G A SLC16A12 Silent p.F56F 0.17 TCGA-D3-A3C8-06 10 91359139 91359139 G A PANK1 Missense_Mutation p.P394S 0.15 tolerated(0.14) possibly_damaging(0.635) TCGA-D3-A3C8-06 10 93360 93360 C T TUBB8 Silent p.R324R 0.09 TCGA-D3-A3C8-06 10 97804153 97804153 G A CCNJ Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) benign(0.132) TCGA-D3-A3C8-06 10 98078267 98078267 G A DNTT Missense_Mutation p.G121E 0.15 tolerated(1) benign(0.017) TCGA-D3-A3C8-06 10 98180773 98180773 G A TLL2 Missense_Mutation p.S288F 0.13 deleterious(0) probably_damaging(0.986) TCGA-D3-A3C8-06 10 98743944 98743944 C T C10orf12 Missense_Mutation p.P933S 0.12 tolerated(0.18) probably_damaging(0.986) TCGA-D3-A3C8-06 10 98744039 98744039 T G C10orf12 Missense_Mutation p.S964R 0.11 tolerated(0.09) possibly_damaging(0.897) TCGA-D3-A3C8-06 11 102668042 102668042 G A MMP1 Nonsense_Mutation p.Q99* 0.21 TCGA-D3-A3C8-06 11 102709325 102709325 C T MMP3 Missense_Mutation p.E396K 0.14 tolerated(0.51) benign(0.033) TCGA-D3-A3C8-06 11 102819754 102819754 C T MMP13 Missense_Mutation p.G351S 0.13 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 11 103780427 103780427 G A PDGFD Nonsense_Mutation p.R370* 0.17 TCGA-D3-A3C8-06 11 103908034 103908034 G A DDI1 Missense_Mutation p.E162K 0.08 deleterious(0.01) possibly_damaging(0.627) TCGA-D3-A3C8-06 11 104825696 104825696 A G CASP4 Silent p.L14L 0.21 TCGA-D3-A3C8-06 11 105880327 105880327 C T MSANTD4 Missense_Mutation p.E325K 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A3C8-06 11 117257941 117257941 C T CEP164 Missense_Mutation p.P583S 0.15 tolerated(0.23) possibly_damaging(0.57) TCGA-D3-A3C8-06 11 118133812 118133812 G A MPZL2 Missense_Mutation p.A20V 0.10 tolerated(0.09) benign(0.016) TCGA-D3-A3C8-06 11 118184537 118184537 G A CD3E Silent p.K156K 0.16 TCGA-D3-A3C8-06 11 120008350 120008350 G A TRIM29 Silent p.S130S 0.08 TCGA-D3-A3C8-06 11 121016447 121016447 C T TECTA Missense_Mutation p.R1243C 0.13 deleterious(0.02) probably_damaging(0.912) TCGA-D3-A3C8-06 11 121986461 121986461 G A BLID Missense_Mutation p.P57L 0.09 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-D3-A3C8-06 11 124180565 124180565 C T OR8D1 Missense_Mutation p.G33E 0.09 deleterious(0.03) possibly_damaging(0.779) TCGA-D3-A3C8-06 11 18956092 18956092 A G MRGPRX1 Silent p.L80L 0.06 TCGA-D3-A3C8-06 11 19077810 19077810 C T MRGPRX2 Missense_Mutation p.G47E 0.09 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A3C8-06 11 33777442 33777442 G A FBXO3 Nonsense_Mutation p.Q185* 0.15 TCGA-D3-A3C8-06 11 36595249 36595249 C T RAG1 Missense_Mutation p.P132L 0.10 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-D3-A3C8-06 11 46911511 46911511 G A LRP4 Silent p.P692P 0.12 TCGA-D3-A3C8-06 11 4869952 4869952 G A OR51S1 Missense_Mutation p.L163F 0.11 deleterious(0.03) probably_damaging(0.911) TCGA-D3-A3C8-06 11 5461909 5461909 G A OR51I1 Missense_Mutation p.S279F 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 11 55032390 55032390 G A TRIM48 Missense_Mutation p.G20E 0.09 tolerated(0.59) benign(0.001) TCGA-D3-A3C8-06 11 55541798 55541798 G A OR5D13 Silent p.R295R 0.17 TCGA-D3-A3C8-06 11 57077369 57077369 G A TNKS1BP1 Missense_Mutation p.T939I 0.11 tolerated(0.26) benign(0.011) TCGA-D3-A3C8-06 11 58125706 58125706 G A OR5B17 Silent p.I279I 0.21 TCGA-D3-A3C8-06 11 58190129 58190129 G A OR5B2 Silent p.S202S 0.24 TCGA-D3-A3C8-06 11 61511332 61511332 C T DAGLA Silent p.L834L 0.07 TCGA-D3-A3C8-06 11 64594561 64594561 G A CDC42BPG Silent p.G1450G 0.08 TCGA-D3-A3C8-06 11 65715022 65715022 G A TSGA10IP RNA 0.17 TCGA-D3-A3C8-06 11 66192411 66192411 C T NPAS4 Silent p.L684L 0.11 TCGA-D3-A3C8-06 11 66260376 66260376 C T DPP3 Missense_Mutation p.P393L 0.11 deleterious(0) probably_damaging(0.933) TCGA-D3-A3C8-06 11 82560137 82560137 G A PRCP Missense_Mutation p.P313L 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 11 84996410 84996410 C T DLG2 Splice_Site p.X14_splice 0.11 TCGA-D3-A3C8-06 11 92577815 92577815 C T FAT3 Missense_Mutation p.S3761F 0.09 probably_damaging(0.984) TCGA-D3-A3C8-06 12 101880267 101880267 G A SPIC Silent p.G155G 0.11 TCGA-D3-A3C8-06 12 106772118 106772118 C T POLR3B Silent p.I190I 0.10 TCGA-D3-A3C8-06 12 112186823 112186823 C T ACAD10 Intron 0.15 TCGA-D3-A3C8-06 12 120582578 120582578 G A GCN1L1 Silent p.I1739I 0.10 TCGA-D3-A3C8-06 12 13716078 13716078 T C GRIN2B Missense_Mutation p.N1365S 0.12 tolerated(0.75) benign(0.001) TCGA-D3-A3C8-06 12 14766225 14766225 C T GUCY2C Silent p.V1016V 0.17 TCGA-D3-A3C8-06 12 18435178 18435178 G A PIK3C2G Missense_Mutation p.E55K 0.16 tolerated_low_confidence(0.2) benign(0.002) TCGA-D3-A3C8-06 12 21242920 21242920 G A SLCO1B7 Silent p.R601R 0.11 TCGA-D3-A3C8-06 12 2714852 2714852 T C CACNA1C Missense_Mutation p.V1039A 0.28 deleterious(0.01) benign(0.339) TCGA-D3-A3C8-06 12 27450708 27450708 G A STK38L Missense_Mutation p.E19K 0.10 tolerated(0.1) possibly_damaging(0.589) TCGA-D3-A3C8-06 12 29649584 29649584 C T OVCH1 Missense_Mutation p.V30I 0.09 tolerated(0.32) benign(0.055) TCGA-D3-A3C8-06 12 33031321 33031321 C T PKP2 Missense_Mutation p.D165N 0.10 tolerated(0.13) benign(0.052) TCGA-D3-A3C8-06 12 39994471 39994471 C T ABCD2 Silent p.G516G 0.11 TCGA-D3-A3C8-06 12 47629331 47629331 G A PCED1B Nonsense_Mutation p.W162* 0.17 TCGA-D3-A3C8-06 12 48091465 48091465 G A RPAP3 Missense_Mutation p.T111I 0.11 tolerated(0.07) benign(0) TCGA-D3-A3C8-06 12 48888736 48888736 G A C12orf54 3'UTR 0.13 TCGA-D3-A3C8-06 12 49523061 49523061 C G TUBA1B Missense_Mutation p.E113D 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.871) TCGA-D3-A3C8-06 12 52188360 52188360 G A SCN8A Missense_Mutation p.R1577K 0.14 deleterious(0) probably_damaging(0.959) TCGA-D3-A3C8-06 12 52943921 52943921 C T KRT71 Missense_Mutation p.G183D 0.11 deleterious(0.04) possibly_damaging(0.864) TCGA-D3-A3C8-06 12 53722796 53722796 G A SP7 Missense_Mutation p.H144Y 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A3C8-06 12 54925126 54925126 G A NCKAP1L Silent p.Q863Q 0.11 TCGA-D3-A3C8-06 12 55758931 55758931 C T OR6C75 Missense_Mutation p.L13F 0.09 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-D3-A3C8-06 12 57111674 57111674 G A NACA Intron 0.12 TCGA-D3-A3C8-06 12 57966430 57966430 G A KIF5A Missense_Mutation p.R546Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C8-06 12 63991597 63991597 C T DPY19L2 Missense_Mutation p.E485K 0.11 deleterious(0) possibly_damaging(0.714) TCGA-D3-A3C8-06 12 6752786 6752786 G A ACRBP Silent p.I332I 0.12 TCGA-D3-A3C8-06 12 6859102 6859102 G A MLF2 Silent p.I157I 0.22 TCGA-D3-A3C8-06 12 6861215 6861215 G A MLF2 Missense_Mutation p.P19L 0.10 deleterious(0) probably_damaging(0.973) TCGA-D3-A3C8-06 12 7022119 7022119 G A LRRC23 Silent p.Q328Q 0.08 TCGA-D3-A3C8-06 12 7177354 7177354 C T C1S Missense_Mutation p.S489F 0.12 tolerated(0.17) possibly_damaging(0.492) TCGA-D3-A3C8-06 12 75874693 75874693 G A GLIPR1 Missense_Mutation p.M11I 0.21 tolerated(0.12) benign(0.001) TCGA-D3-A3C8-06 12 80764421 80764421 G A OTOGL Silent p.L2220L 0.12 TCGA-D3-A3C8-06 12 81111303 81111303 C T MYF5 Missense_Mutation p.S154L 0.09 deleterious(0) possibly_damaging(0.821) TCGA-D3-A3C8-06 12 88560199 88560199 C T TMTC3 Missense_Mutation p.P297L 0.12 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 12 9000241 9000241 G A A2ML1 Missense_Mutation p.V594M 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 12 9265009 9265009 G A A2M Nonsense_Mutation p.Q132* 0.17 TCGA-D3-A3C8-06 12 97045486 97045486 C T C12orf55 Missense_Mutation p.P1665S 0.17 deleterious(0.03) possibly_damaging(0.794) TCGA-D3-A3C8-06 13 113814420 113814420 G A PROZ Missense_Mutation p.E77K 0.09 deleterious(0.05) probably_damaging(1) TCGA-D3-A3C8-06 13 33635435 33635435 C A KL Missense_Mutation p.P740H 0.11 deleterious(0) probably_damaging(0.945) TCGA-D3-A3C8-06 13 47469888 47469888 G A HTR2A Nonsense_Mutation p.R52* 0.11 TCGA-D3-A3C8-06 13 92345629 92345629 C T GPC5 Missense_Mutation p.P172S 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 14 102368098 102368098 C T PPP2R5C Missense_Mutation p.P330S 0.13 tolerated(0.1) benign(0.215) TCGA-D3-A3C8-06 14 105181624 105181624 T C INF2 Missense_Mutation p.V1233A 0.07 deleterious_low_confidence(0) unknown(0) TCGA-D3-A3C8-06 14 106586575 106586575 G A IGHV3-13 Silent p.L5L 0.08 TCGA-D3-A3C8-06 14 20528284 20528284 C T OR4L1 Silent p.F27F 0.09 TCGA-D3-A3C8-06 14 22592027 22592027 C T TRAV26-1 Missense_Mutation p.P38S 0.27 tolerated(0.23) benign(0.016) TCGA-D3-A3C8-06 14 53529882 53529882 G A DDHD1 Silent p.S515S 0.09 TCGA-D3-A3C8-06 14 60925443 60925443 C T C14orf39 Missense_Mutation p.D378N 0.09 tolerated(0.1) benign(0.124) TCGA-D3-A3C8-06 14 64655272 64655272 C T SYNE2 Missense_Mutation p.A5906V 0.11 probably_damaging(0.999) TCGA-D3-A3C8-06 14 72055091 72055091 C T SIPA1L1 Missense_Mutation p.R168C 0.14 deleterious(0.03) probably_damaging(0.988) TCGA-D3-A3C8-06 14 73640349 73640349 C T PSEN1 Silent p.I138I 0.11 TCGA-D3-A3C8-06 14 93709119 93709119 G A BTBD7 Missense_Mutation p.P967S 0.09 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-D3-A3C8-06 14 99724040 99724040 G A BCL11B Silent p.F65F 0.12 TCGA-D3-A3C8-06 15 31822961 31822961 G A OTUD7A Missense_Mutation p.P201S 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 15 33928596 33928596 G A RYR3 Missense_Mutation p.G1134E 0.09 probably_damaging(1) TCGA-D3-A3C8-06 15 43814443 43814443 C T MAP1A Missense_Mutation p.P258S 0.15 probably_damaging(0.996) TCGA-D3-A3C8-06 15 43893189 43893189 G A STRC Silent p.F1575F 0.21 TCGA-D3-A3C8-06 15 45431689 45431689 C T DUOX1 Silent p.G427G 0.11 TCGA-D3-A3C8-06 15 50212512 50212512 C T ATP8B4 Silent p.A618A 0.11 TCGA-D3-A3C8-06 15 50555448 50555448 C T HDC Missense_Mutation p.R63Q 0.14 tolerated(0.13) benign(0.015) TCGA-D3-A3C8-06 15 52531932 52531932 G A MYO5C Nonsense_Mutation p.Q901* 0.18 TCGA-D3-A3C8-06 15 52571829 52571829 G A MYO5C Missense_Mutation p.R61W 0.10 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C8-06 15 59910665 59910665 G A GCNT3 Silent p.G76G 0.10 TCGA-D3-A3C8-06 15 62239485 62239485 C T VPS13C Missense_Mutation p.D1595N 0.10 deleterious(0.04) benign(0.008) TCGA-D3-A3C8-06 15 67482832 67482832 C T SMAD3 Silent p.T412T 0.27 TCGA-D3-A3C8-06 15 72190477 72190477 G A MYO9A Missense_Mutation p.T1456I 0.18 tolerated_low_confidence(0.13) benign(0.002) TCGA-D3-A3C8-06 15 78921816 78921816 G A CHRNB4 Silent p.F277F 0.10 TCGA-D3-A3C8-06 15 91346770 91346770 C T BLM Silent p.I1126I 0.07 TCGA-D3-A3C8-06 15 91448834 91448834 C T MAN2A2 Missense_Mutation p.P139L 0.09 deleterious(0) benign(0.251) TCGA-D3-A3C8-06 15 92459244 92459244 G A SLCO3A1 Missense_Mutation p.E68K 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 16 14972641 14972641 C T NOMO1 Missense_Mutation p.R903C 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 16 1718096 1718096 C T CRAMP1L Missense_Mutation p.S1079F 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 16 20043949 20043949 C T GPR139 Missense_Mutation p.R57K 0.11 tolerated(0.1) probably_damaging(0.987) TCGA-D3-A3C8-06 16 2012881 2012881 G A RPS2 Silent p.G135G 0.24 TCGA-D3-A3C8-06 16 20494401 20494401 C T ACSM2A Silent p.L511L 0.11 TCGA-D3-A3C8-06 16 31421742 31421742 G A ITGAD Silent p.G370G 0.09 TCGA-D3-A3C8-06 16 31425858 31425858 C T ITGAD Missense_Mutation p.P695S 0.08 tolerated(0.59) benign(0.003) TCGA-D3-A3C8-06 16 46695716 46695716 G A VPS35 Nonsense_Mutation p.Q709* 0.12 TCGA-D3-A3C8-06 16 51173664 51173664 G A SALL1 Silent p.N823N 0.08 TCGA-D3-A3C8-06 16 56920320 56920320 C T SLC12A3 Missense_Mutation p.A657V 0.26 deleterious(0.03) possibly_damaging(0.767) TCGA-D3-A3C8-06 16 67029622 67029622 C T CES4A Silent p.V50V 0.11 TCGA-D3-A3C8-06 16 67236316 67236316 G A ELMO3 Silent p.Q479Q 0.09 TCGA-D3-A3C8-06 16 72094674 72094674 G A HP Nonsense_Mutation p.W369* 0.14 TCGA-D3-A3C8-06 16 72829865 72829865 C T ZFHX3 Nonsense_Mutation p.W2239* 0.10 TCGA-D3-A3C8-06 16 82032905 82032905 C T SDR42E1 Silent p.K331K 0.11 TCGA-D3-A3C8-06 16 9857061 9857061 G A GRIN2A Missense_Mutation p.S1447F 0.17 deleterious(0) probably_damaging(0.984) TCGA-D3-A3C8-06 17 10210258 10210258 C T MYH13 Missense_Mutation p.D1765N 0.11 deleterious(0) benign(0.357) TCGA-D3-A3C8-06 17 12656442 12656442 C T MYOCD Missense_Mutation p.H613Y 0.12 tolerated(0.81) benign(0.409) TCGA-D3-A3C8-06 17 12656636 12656636 C A MYOCD Silent p.P677P 0.12 TCGA-D3-A3C8-06 17 20799116 20799116 T C CCDC144NL Missense_Mutation p.Q73R 0.11 tolerated_low_confidence(0.49) benign(0.008) TCGA-D3-A3C8-06 17 26900874 26900874 G A ALDOC Missense_Mutation p.P293L 0.08 tolerated(0.36) benign(0.002) TCGA-D3-A3C8-06 17 26943653 26943653 G A KIAA0100 Missense_Mutation p.S2047F 0.10 tolerated(0.14) benign(0.021) TCGA-D3-A3C8-06 17 27061926 27061926 G A NEK8 Silent p.K130K 0.10 TCGA-D3-A3C8-06 17 3181423 3181423 C T OR3A2 Missense_Mutation p.M269I 0.12 tolerated(0.35) benign(0.062) TCGA-D3-A3C8-06 17 33507639 33507639 G A UNC45B Missense_Mutation p.D775N 0.12 deleterious(0.01) benign(0.269) TCGA-D3-A3C8-06 17 36064953 36064953 G A HNF1B Missense_Mutation p.P437L 0.10 tolerated(0.16) benign(0.168) TCGA-D3-A3C8-06 17 37565988 37565988 T C MED1 Missense_Mutation p.N829S 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.55) TCGA-D3-A3C8-06 17 38133119 38133119 C T GSDMA Silent p.F382F 0.10 TCGA-D3-A3C8-06 17 39670283 39670283 C T KRT15 Missense_Mutation p.E455K 0.12 deleterious(0.03) benign(0.37) TCGA-D3-A3C8-06 17 43907570 43907570 A C CRHR1 Missense_Mutation p.Q211P 0.17 deleterious(0.04) benign(0.317) TCGA-D3-A3C8-06 17 43922996 43922996 G A SPPL2C Missense_Mutation p.E242K 0.12 tolerated(0.2) benign(0.015) TCGA-D3-A3C8-06 17 46607149 46607149 G A HOXB1 Silent p.F222F 0.09 TCGA-D3-A3C8-06 17 53237280 53237280 C T STXBP4 3'UTR 0.36 TCGA-D3-A3C8-06 17 63186319 63186319 G A RGS9 Missense_Mutation p.M237I 0.09 tolerated(0.3) benign(0.034) TCGA-D3-A3C8-06 17 64783058 64783058 C T PRKCA Missense_Mutation p.S560F 0.12 tolerated(0.68) benign(0.166) TCGA-D3-A3C8-06 17 67020476 67020476 C T ABCA9 Silent p.R720R 0.13 TCGA-D3-A3C8-06 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.13 TCGA-D3-A3C8-06 17 76089112 76089112 G A TNRC6C Missense_Mutation p.A1354T 0.19 tolerated(0.25) possibly_damaging(0.678) TCGA-D3-A3C8-06 17 76437248 76437248 G A DNAH17 Silent p.F3840F 0.17 TCGA-D3-A3C8-06 17 77711814 77711814 G A ENPP7 Missense_Mutation p.G449E 0.16 tolerated_low_confidence(0.09) benign(0.157) TCGA-D3-A3C8-06 17 7950292 7950292 C T ALOX15B Missense_Mutation p.S452F 0.11 deleterious(0) possibly_damaging(0.866) TCGA-D3-A3C8-06 18 29340698 29340698 G A SLC25A52 5'UTR 0.17 TCGA-D3-A3C8-06 18 44580782 44580782 C G KATNAL2 Missense_Mutation p.P30R 0.09 tolerated(0.38) benign(0.075) TCGA-D3-A3C8-06 18 51889214 51889214 C T C18orf54 Silent p.S221S 0.12 TCGA-D3-A3C8-06 18 59713023 59713023 G A PIGN 3'UTR 0.17 TCGA-D3-A3C8-06 18 66564557 66564557 C T CCDC102B Silent p.I385I 0.10 TCGA-D3-A3C8-06 18 67781698 67781698 G A RTTN Silent p.F1222F 0.09 TCGA-D3-A3C8-06 19 17007076 17007076 C T CPAMD8 Silent p.P1826P 0.24 TCGA-D3-A3C8-06 19 19338150 19338150 C T NCAN Missense_Mutation p.P574L 0.13 tolerated(0.1) possibly_damaging(0.617) TCGA-D3-A3C8-06 19 22780133 22780133 G A RN7SL860P 5'Flank 0.13 TCGA-D3-A3C8-06 19 30935406 30935406 G A ZNF536 Missense_Mutation p.E313K 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 19 31039516 31039516 G A ZNF536 Missense_Mutation p.S997N 0.14 tolerated(1) benign(0.001) TCGA-D3-A3C8-06 19 33647373 33647373 C T WDR88 Nonsense_Mutation p.R308* 0.10 TCGA-D3-A3C8-06 19 35978355 35978355 C T KRTDAP Missense_Mutation p.R92K 0.08 tolerated_low_confidence(0.07) possibly_damaging(0.789) TCGA-D3-A3C8-06 19 36256040 36256040 C T C19orf55 Silent p.I244I 0.19 TCGA-D3-A3C8-06 19 36435702 36435702 C T LRFN3 Silent p.F556F 0.15 TCGA-D3-A3C8-06 19 37440580 37440580 C T ZNF568 Silent p.F175F 0.08 TCGA-D3-A3C8-06 19 38989858 38989858 C T RYR1 Silent p.F2334F 0.14 TCGA-D3-A3C8-06 19 42133272 42133272 G A CEACAM4 Silent p.I20I 0.21 TCGA-D3-A3C8-06 19 42342269 42342269 G A LYPD4 Missense_Mutation p.S93F 0.11 deleterious(0) possibly_damaging(0.862) TCGA-D3-A3C8-06 19 45493807 45493807 C T CLPTM1 Silent p.I429I 0.08 TCGA-D3-A3C8-06 19 45998125 45998125 A G RTN2 Missense_Mutation p.V73A 0.13 tolerated_low_confidence(0.19) benign(0.085) TCGA-D3-A3C8-06 19 50399093 50399093 C T IL4I1 Silent p.V99V 0.10 TCGA-D3-A3C8-06 19 52004703 52004703 G A SIGLEC12 Silent p.L95L 0.12 TCGA-D3-A3C8-06 19 5456309 5456309 C T ZNRF4 Silent p.F269F 0.10 TCGA-D3-A3C8-06 19 55286856 55286856 G C KIR2DL1 Missense_Mutation p.D204H 0.14 tolerated(0.35) probably_damaging(0.994) TCGA-D3-A3C8-06 19 56363680 56363680 G A NLRP4 Silent p.K78K 0.10 TCGA-D3-A3C8-06 19 56370027 56370027 G A NLRP4 Missense_Mutation p.G423E 0.08 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C8-06 19 56952566 56952566 G A ZNF667 Nonsense_Mutation p.R600* 0.09 TCGA-D3-A3C8-06 19 57648291 57648291 C T ZIM3 Missense_Mutation p.G64E 0.12 tolerated(0.65) probably_damaging(0.998) TCGA-D3-A3C8-06 19 6177269 6177269 G A ACSBG2 Silent p.K256K 0.11 TCGA-D3-A3C8-06 19 7142980 7142980 G A INSR Missense_Mutation p.P797S 0.10 tolerated(0.45) benign(0.001) TCGA-D3-A3C8-06 19 757082 757082 G A MISP Missense_Mutation p.D46N 0.20 tolerated(0.15) benign(0.14) TCGA-D3-A3C8-06 19 8922407 8922407 G A ZNF558 Silent p.S253S 0.12 TCGA-D3-A3C8-06 19 8931968 8931968 G A ZNF558 Silent p.F45F 0.14 TCGA-D3-A3C8-06 19 9046048 9046048 C T MUC16 Missense_Mutation p.M11861I 0.11 benign(0.145) TCGA-D3-A3C8-06 19 9089545 9089545 G A MUC16 Missense_Mutation p.P757L 0.13 unknown(0) TCGA-D3-A3C8-06 1 10405970 10405970 C T KIF1B Silent p.L1206L 0.09 TCGA-D3-A3C8-06 1 10713500 10713500 G A CASZ1 Missense_Mutation p.L872F 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3C8-06 1 110033590 110033590 C T ATXN7L2 Missense_Mutation p.P469S 0.07 tolerated(0.52) benign(0.002) TCGA-D3-A3C8-06 1 110152749 110152749 G A GNAT2 Silent p.I72I 0.08 TCGA-D3-A3C8-06 1 110171047 110171047 C T AMPD2 Missense_Mutation p.S500F 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 1 110171048 110171048 C T AMPD2 Silent p.S500S 0.12 TCGA-D3-A3C8-06 1 11137440 11137440 G A EXOSC10 Missense_Mutation p.P621S 0.10 tolerated(0.41) benign(0.001) TCGA-D3-A3C8-06 1 11585237 11585237 C T PTCHD2 Silent p.F827F 0.15 TCGA-D3-A3C8-06 1 118629342 118629342 G A SPAG17 Silent p.L521L 0.08 TCGA-D3-A3C8-06 1 120337285 120337285 C T REG4 Missense_Mutation p.E145K 0.08 tolerated(0.41) benign(0.153) TCGA-D3-A3C8-06 1 12628362 12628362 C T DHRS3 3'UTR 0.16 TCGA-D3-A3C8-06 1 12954858 12954858 C T PRAMEF10 Missense_Mutation p.G142E 0.18 tolerated(0.71) benign(0.044) TCGA-D3-A3C8-06 1 147092682 147092682 C T BCL9 Silent p.S907S 0.15 TCGA-D3-A3C8-06 1 152281481 152281481 G A FLG Missense_Mutation p.H1961Y 0.07 benign(0.152) TCGA-D3-A3C8-06 1 152281618 152281618 C T FLG Missense_Mutation p.G1915E 0.08 probably_damaging(0.982) TCGA-D3-A3C8-06 1 154067584 154067584 C T NUP210L Missense_Mutation p.E672K 0.09 deleterious(0) possibly_damaging(0.844) TCGA-D3-A3C8-06 1 155279906 155279906 C T FDPS Silent p.F83F 0.12 TCGA-D3-A3C8-06 1 156038172 156038172 G A RAB25 Silent p.T117T 0.10 TCGA-D3-A3C8-06 1 157805728 157805728 G A CD5L Silent p.I91I 0.07 TCGA-D3-A3C8-06 1 158596004 158596004 C T SPTA1 Missense_Mutation p.E1948K 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 1 158746824 158746824 G A OR6N2 Missense_Mutation p.A201V 0.12 tolerated(1) benign(0.034) TCGA-D3-A3C8-06 1 159272649 159272649 G A FCER1A Missense_Mutation p.D21N 0.10 tolerated(0.32) benign(0.028) TCGA-D3-A3C8-06 1 159283514 159283514 G A OR10J3 Silent p.S312S 0.09 TCGA-D3-A3C8-06 1 159857657 159857657 C T CCDC19 Missense_Mutation p.E188K 0.12 deleterious(0) probably_damaging(0.943) TCGA-D3-A3C8-06 1 159921544 159921544 G A SLAMF9 Silent p.V259V 0.12 TCGA-D3-A3C8-06 1 160771728 160771728 C T LY9 Intron 0.20 TCGA-D3-A3C8-06 1 16255609 16255609 T C SPEN Silent p.L958L 0.08 TCGA-D3-A3C8-06 1 169701840 169701840 C T SELE Missense_Mutation p.E113K 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 1 175375791 175375791 G A TNR Silent p.I20I 0.08 TCGA-D3-A3C8-06 1 17603076 17603076 C T PADI3 Missense_Mutation p.P457L 0.15 deleterious(0) benign(0.349) TCGA-D3-A3C8-06 1 176668664 176668664 C T PAPPA2 Missense_Mutation p.P1059S 0.10 deleterious(0) probably_damaging(0.992) TCGA-D3-A3C8-06 1 179989416 179989416 C T CEP350 Missense_Mutation p.S836F 0.08 probably_damaging(0.999) TCGA-D3-A3C8-06 1 182615859 182615859 C T RGS8 3'UTR 0.12 TCGA-D3-A3C8-06 1 183543712 183543712 C T NCF2 Nonsense_Mutation p.W137* 0.12 TCGA-D3-A3C8-06 1 186915848 186915849 - T PLA2G4A Frame_Shift_Ins p.M374Yfs*6 0.16 TCGA-D3-A3C8-06 1 19185996 19185996 G A TAS1R2 Silent p.F53F 0.15 TCGA-D3-A3C8-06 1 196695937 196695937 G A CFH Nonsense_Mutation p.W701* 0.14 TCGA-D3-A3C8-06 1 196697622 196697622 G A CFH Missense_Mutation p.G795R 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 1 196971782 196971782 C T CFHR5 Missense_Mutation p.P440S 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 1 197889123 197889123 G A LHX9 Missense_Mutation p.E66K 0.08 tolerated(0.15) benign(0.01) TCGA-D3-A3C8-06 1 198665998 198665998 C T PTPRC Silent p.S86S 0.10 TCGA-D3-A3C8-06 1 199996999 199996999 G A NR5A2 Silent p.G8G 0.12 TCGA-D3-A3C8-06 1 202205081 202205081 C T LGR6 Missense_Mutation p.P130S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 1 203138109 203138109 C T MYBPH Missense_Mutation p.D448N 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 1 206224640 206224640 C T AVPR1B Missense_Mutation p.S67F 0.09 deleterious(0) probably_damaging(0.963) TCGA-D3-A3C8-06 1 206224959 206224959 C T AVPR1B Silent p.S173S 0.14 TCGA-D3-A3C8-06 1 208062063 208062063 C T CD34 Missense_Mutation p.M312I 0.08 deleterious(0) probably_damaging(0.954) TCGA-D3-A3C8-06 1 211843679 211843679 G A NEK2 Missense_Mutation p.P237S 0.12 tolerated(0.07) probably_damaging(0.98) TCGA-D3-A3C8-06 1 21276553 21276553 C T EIF4G3 Missense_Mutation p.E206K 0.11 deleterious(0.01) benign(0.297) TCGA-D3-A3C8-06 1 218036175 218036175 A G SPATA17 Silent p.S355S 0.09 TCGA-D3-A3C8-06 1 227947071 227947071 C T SNAP47 Silent p.I336I 0.10 TCGA-D3-A3C8-06 1 230903338 230903338 G A CAPN9 Missense_Mutation p.M196I 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3C8-06 1 233394292 233394292 C T PCNXL2 Missense_Mutation p.G439E 0.10 tolerated_low_confidence(0.62) benign(0.002) TCGA-D3-A3C8-06 1 233394693 233394693 C T PCNXL2 Silent p.Q305Q 0.16 TCGA-D3-A3C8-06 1 235955205 235955205 C T LYST Missense_Mutation p.R1446Q 0.12 tolerated(1) benign(0.001) TCGA-D3-A3C8-06 1 236924354 236924354 C T ACTN2 Missense_Mutation p.P803S 0.09 deleterious(0.04) benign(0.027) TCGA-D3-A3C8-06 1 238050838 238050838 C G ZP4 Missense_Mutation p.G193R 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 1 247654686 247654686 G A OR2W5 RNA 0.16 TCGA-D3-A3C8-06 1 247752201 247752201 C T OR2G2 Silent p.F180F 0.15 TCGA-D3-A3C8-06 1 248308789 248308789 C T OR2M5 Silent p.L114L 0.12 TCGA-D3-A3C8-06 1 248458301 248458301 C T OR2T12 Missense_Mutation p.E194K 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A3C8-06 1 26694970 26694970 G A ZNF683 Silent p.F31F 0.11 TCGA-D3-A3C8-06 1 34291349 34291349 G A CSMD2 Nonsense_Mutation p.R314* 0.17 TCGA-D3-A3C8-06 1 34667757 34667757 C T C1orf94 Missense_Mutation p.P448L 0.15 deleterious(0.01) benign(0.012) TCGA-D3-A3C8-06 1 39951278 39951278 C T MACF1 Missense_Mutation p.R5369W 0.12 probably_damaging(0.988) TCGA-D3-A3C8-06 1 42047174 42047174 G A HIVEP3 Missense_Mutation p.P1099S 0.16 benign(0.004) TCGA-D3-A3C8-06 1 43777423 43777423 C T TIE1 Missense_Mutation p.S472F 0.14 tolerated(0.49) possibly_damaging(0.73) TCGA-D3-A3C8-06 1 47403795 47403795 C T CYP4A11 Silent p.Q70Q 0.09 TCGA-D3-A3C8-06 1 54610287 54610287 C T CDCP2 Silent p.G93G 0.20 TCGA-D3-A3C8-06 1 57395071 57395071 C T C8B 3'UTR 0.20 TCGA-D3-A3C8-06 1 66075946 66075946 G A LEPR Missense_Mutation p.M654I 0.21 tolerated(0.29) benign(0.007) TCGA-D3-A3C8-06 1 75065574 75065574 C T C1orf173 Missense_Mutation p.E511K 0.08 deleterious(0.02) benign(0.284) TCGA-D3-A3C8-06 1 89735113 89735113 C T GBP5 Silent p.A42A 0.10 TCGA-D3-A3C8-06 1 92732271 92732271 G A GLMN Missense_Mutation p.P376S 0.08 deleterious(0) probably_damaging(0.933) TCGA-D3-A3C8-06 1 94487471 94487471 G A ABCA4 Silent p.V1568V 0.10 TCGA-D3-A3C8-06 1 98164917 98164917 C T DPYD Missense_Mutation p.G224S 0.10 deleterious(0) probably_damaging(0.994) TCGA-D3-A3C8-06 20 29847349 29847349 G A DEFB115 Missense_Mutation p.E61K 0.29 tolerated(0.9) benign(0) TCGA-D3-A3C8-06 20 30064370 30064370 C T REM1 Missense_Mutation p.S41F 0.18 deleterious(0.03) benign(0.001) TCGA-D3-A3C8-06 20 30137904 30137904 C T HM13 Missense_Mutation p.S235F 0.15 deleterious(0) probably_damaging(0.976) TCGA-D3-A3C8-06 20 33623094 33623094 G A TRPC4AP Missense_Mutation p.P295S 0.15 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A3C8-06 20 36560081 36560081 G A VSTM2L Missense_Mutation p.E56K 0.10 deleterious(0.01) possibly_damaging(0.889) TCGA-D3-A3C8-06 20 36974948 36974948 C T LBP Missense_Mutation p.S10F 0.15 tolerated(0.15) unknown(0) TCGA-D3-A3C8-06 20 43058382 43058382 G A HNF4A 3'UTR 0.12 TCGA-D3-A3C8-06 20 43851693 43851693 G A SEMG2 Missense_Mutation p.E474K 0.19 tolerated(0.29) unknown(0) TCGA-D3-A3C8-06 20 44236765 44236765 G A WFDC9 Missense_Mutation p.S85L 0.09 deleterious(0.02) benign(0.058) TCGA-D3-A3C8-06 20 44506092 44506092 C T ZSWIM3 Missense_Mutation p.P299S 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 20 45132877 45132877 C T ZNF334 Missense_Mutation p.E73K 0.19 tolerated(0.08) benign(0.039) TCGA-D3-A3C8-06 20 47770587 47770587 T C STAU1 Missense_Mutation p.E76G 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 20 47990562 47990562 G A KCNB1 Missense_Mutation p.P512L 0.08 deleterious_low_confidence(0.02) benign(0.438) TCGA-D3-A3C8-06 20 6065812 6065812 C T FERMT1 Silent p.R498R 0.10 TCGA-D3-A3C8-06 20 60892524 60892524 C T LAMA5 Missense_Mutation p.G2463E 0.20 benign(0.034) TCGA-D3-A3C8-06 20 9449219 9449219 G A PLCB4 Missense_Mutation p.E1072K 0.09 deleterious(0.02) possibly_damaging(0.544) TCGA-D3-A3C8-06 20 9496169 9496169 A T LAMP5 Missense_Mutation p.K45I 0.12 deleterious(0) probably_damaging(0.995) TCGA-D3-A3C8-06 20 9547014 9547014 T G PAK7 Silent p.A336A 0.08 TCGA-D3-A3C8-06 21 30421088 30421088 G A USP16 Missense_Mutation p.R673K 0.12 tolerated(1) benign(0.003) TCGA-D3-A3C8-06 21 42861441 42861441 C T TMPRSS2 Nonsense_Mutation p.W143* 0.14 TCGA-D3-A3C8-06 22 21167678 21167678 G A PI4KA Missense_Mutation p.P325S 0.13 tolerated(0.23) benign(0.013) TCGA-D3-A3C8-06 22 23077577 23077577 C T IGLV2-18 Silent p.F118F 0.15 TCGA-D3-A3C8-06 22 37326545 37326545 G A CSF2RB Missense_Mutation p.D283N 0.12 tolerated(0.34) benign(0.003) TCGA-D3-A3C8-06 22 37769893 37769893 G A ELFN2 Missense_Mutation p.S561F 0.26 deleterious(0) probably_damaging(0.947) TCGA-D3-A3C8-06 22 38369811 38369811 C T SOX10 Silent p.Q364Q 0.08 TCGA-D3-A3C8-06 22 39966859 39966859 C T CACNA1I Silent p.S34S 0.19 TCGA-D3-A3C8-06 22 45258323 45258323 C T PRR5-ARHGAP8 Missense_Mutation p.P594S 0.17 tolerated_low_confidence(0.78) benign(0) TCGA-D3-A3C8-06 22 46319209 46319209 C T WNT7B Missense_Mutation p.E193K 0.14 tolerated(0.68) benign(0.07) TCGA-D3-A3C8-06 22 50599129 50599129 G A MOV10L1 Missense_Mutation p.E1113K 0.12 deleterious(0.02) benign(0.279) TCGA-D3-A3C8-06 2 100623280 100623280 C T AFF3 Silent p.Q254Q 0.12 TCGA-D3-A3C8-06 2 101097588 101097588 G A NMS Missense_Mutation p.D125N 0.11 tolerated(0.06) probably_damaging(0.966) TCGA-D3-A3C8-06 2 128627089 128627089 G A AMMECR1L Silent p.F221F 0.11 TCGA-D3-A3C8-06 2 130951526 130951526 C T TUBA3E Missense_Mutation p.E297K 0.11 deleterious_low_confidence(0) benign(0.435) TCGA-D3-A3C8-06 2 133541347 133541347 C T NCKAP5 Missense_Mutation p.E1013K 0.14 deleterious(0.01) benign(0.324) TCGA-D3-A3C8-06 2 133542973 133542973 C T NCKAP5 Missense_Mutation p.D471N 0.11 deleterious(0) probably_damaging(0.928) TCGA-D3-A3C8-06 2 141598662 141598662 C T LRP1B Splice_Site p.X1647_splice 0.09 TCGA-D3-A3C8-06 2 150327244 150327244 C T LYPD6 Silent p.P132P 0.11 TCGA-D3-A3C8-06 2 166172019 166172019 C T SCN2A Silent p.F474F 0.16 TCGA-D3-A3C8-06 2 171256785 171256785 G A MYO3B Missense_Mutation p.D627N 0.09 deleterious(0.03) possibly_damaging(0.838) TCGA-D3-A3C8-06 2 172966262 172966262 G A DLX2 Silent p.F171F 0.19 TCGA-D3-A3C8-06 2 175439971 175439971 C T WIPF1 Missense_Mutation p.G107R 0.09 deleterious(0.01) possibly_damaging(0.77) TCGA-D3-A3C8-06 2 179398792 179398792 C T TTN Missense_Mutation p.E34184K 0.11 TCGA-D3-A3C8-06 2 179399404 179399404 C T TTN Missense_Mutation p.E33980K 0.13 TCGA-D3-A3C8-06 2 179419873 179419873 G A TTN Missense_Mutation p.P29438L 0.14 TCGA-D3-A3C8-06 2 179435851 179435851 G A TTN Missense_Mutation p.A25003V 0.12 TCGA-D3-A3C8-06 2 179439461 179439461 G A TTN Missense_Mutation p.R23800C 0.11 TCGA-D3-A3C8-06 2 179444550 179444550 C T TTN Silent p.L22458L 0.10 TCGA-D3-A3C8-06 2 179595732 179595732 T G TTN Missense_Mutation p.K5887T 0.09 TCGA-D3-A3C8-06 2 179599268 179599268 G A TTN Nonsense_Mutation p.Q5095* 0.09 TCGA-D3-A3C8-06 2 179638755 179638755 G A TTN Silent p.S2380S 0.14 TCGA-D3-A3C8-06 2 179641103 179641103 C T TTN Missense_Mutation p.G1830S 0.10 TCGA-D3-A3C8-06 2 179647623 179647623 C T TTN Missense_Mutation p.E1004K 0.13 TCGA-D3-A3C8-06 2 179665281 179665281 C T TTN Missense_Mutation p.A142T 0.09 TCGA-D3-A3C8-06 2 1805528 1805528 G A MYT1L Silent p.I1070I 0.09 TCGA-D3-A3C8-06 2 182347377 182347377 C T ITGA4 Missense_Mutation p.S347L 0.19 tolerated(0.26) benign(0.003) TCGA-D3-A3C8-06 2 190535172 190535172 C T ASNSD1 Missense_Mutation p.P551L 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 2 19553261 19553261 G A OSR1 Silent p.I102I 0.13 TCGA-D3-A3C8-06 2 196759894 196759894 C T DNAH7 Missense_Mutation p.D1568N 0.14 tolerated(0.49) benign(0.042) TCGA-D3-A3C8-06 2 197990750 197990750 C A ANKRD44 Missense_Mutation p.Q91H 0.12 tolerated(0.15) benign(0.064) TCGA-D3-A3C8-06 2 201876142 201876142 G A FAM126B Silent p.S129S 0.11 TCGA-D3-A3C8-06 2 204016255 204016255 G T NBEAL1 Missense_Mutation p.V1815L 0.10 deleterious(0.01) benign(0.045) TCGA-D3-A3C8-06 2 209046029 209046029 C T C2orf80 Silent p.L69L 0.22 TCGA-D3-A3C8-06 2 21229048 21229048 C T APOB Silent p.E3564E 0.09 TCGA-D3-A3C8-06 2 21236264 21236264 G A APOB Silent p.F1328F 0.09 TCGA-D3-A3C8-06 2 220167353 220167353 G A PTPRN Missense_Mutation p.P195L 0.12 deleterious(0) possibly_damaging(0.889) TCGA-D3-A3C8-06 2 227946857 227946857 C G COL4A4 Missense_Mutation p.G557A 0.07 probably_damaging(0.976) TCGA-D3-A3C8-06 2 228882732 228882732 C T SPHKAP Silent p.A946A 0.12 TCGA-D3-A3C8-06 2 228883353 228883353 C T SPHKAP Silent p.K739K 0.08 TCGA-D3-A3C8-06 2 233195473 233195473 C T DIS3L2 Missense_Mutation p.S666F 0.10 deleterious(0.04) possibly_damaging(0.857) TCGA-D3-A3C8-06 2 242794947 242794947 G A PDCD1 Nonsense_Mutation p.Q88* 0.40 TCGA-D3-A3C8-06 2 27802154 27802154 G A C2orf16 Silent p.R905R 0.09 TCGA-D3-A3C8-06 2 28771773 28771773 G A PLB1 Missense_Mutation p.G328E 0.11 tolerated(1) benign(0.01) TCGA-D3-A3C8-06 2 29038972 29038972 C T SPDYA Missense_Mutation p.P31L 0.13 tolerated(0.32) benign(0) TCGA-D3-A3C8-06 2 29344282 29344282 C T CLIP4 Missense_Mutation p.P10S 0.10 tolerated(0.57) benign(0.003) TCGA-D3-A3C8-06 2 31570492 31570492 G A XDH Missense_Mutation p.P1058S 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A3C8-06 2 37455080 37455080 A G CEBPZ Missense_Mutation p.V419A 0.10 tolerated(0.08) possibly_damaging(0.786) TCGA-D3-A3C8-06 2 38179102 38179102 C T RMDN2 Silent p.F248F 0.14 TCGA-D3-A3C8-06 2 38976774 38976774 G A SRSF7 Missense_Mutation p.P95S 0.10 tolerated(0.24) benign(0.082) TCGA-D3-A3C8-06 2 39074213 39074213 G A DHX57 Missense_Mutation p.R723C 0.18 deleterious(0) benign(0.028) TCGA-D3-A3C8-06 2 44099372 44099372 C T ABCG8 Missense_Mutation p.P380S 0.08 tolerated(0.89) benign(0.001) TCGA-D3-A3C8-06 2 44513267 44513267 C T SLC3A1 Missense_Mutation p.R288C 0.09 deleterious(0) probably_damaging(0.93) TCGA-D3-A3C8-06 2 48809499 48809499 C T STON1-GTF2A1L Missense_Mutation p.S576L 0.10 tolerated(0.11) probably_damaging(0.967) TCGA-D3-A3C8-06 2 51255169 51255169 C T NRXN1 Silent p.L81L 0.24 TCGA-D3-A3C8-06 2 70402819 70402819 G A C2orf42 Missense_Mutation p.S342L 0.08 tolerated(0.08) benign(0.082) TCGA-D3-A3C8-06 2 71039588 71039588 C T CLEC4F Silent p.K510K 0.16 TCGA-D3-A3C8-06 2 71795188 71795188 G A DYSF Silent p.G891G 0.13 TCGA-D3-A3C8-06 2 72606907 72606907 G A EXOC6B Silent p.L691L 0.16 TCGA-D3-A3C8-06 2 74750029 74750029 C T DQX1 Silent p.R419R 0.09 TCGA-D3-A3C8-06 2 75104402 75104402 C T HK2 Missense_Mutation p.L329F 0.10 tolerated(0.45) probably_damaging(0.971) TCGA-D3-A3C8-06 2 84811238 84811238 C T DNAH6 Missense_Mutation p.S782F 0.10 tolerated(0.51) benign(0.005) TCGA-D3-A3C8-06 2 89513351 89513351 C T IGKV1-27 Missense_Mutation p.G11E 0.10 tolerated(0.07) benign(0.331) TCGA-D3-A3C8-06 2 96952094 96952094 G A SNRNP200 Missense_Mutation p.L1320F 0.10 deleterious(0.04) benign(0.021) TCGA-D3-A3C8-06 3 101298703 101298703 C T PCNP Missense_Mutation p.S45F 0.10 tolerated(0.06) benign(0.007) TCGA-D3-A3C8-06 3 105586288 105586288 G A CBLB Missense_Mutation p.T45I 0.09 deleterious(0.01) possibly_damaging(0.571) TCGA-D3-A3C8-06 3 109031534 109031534 G A DPPA2 Silent p.F13F 0.10 TCGA-D3-A3C8-06 3 111603145 111603145 C T PHLDB2 Missense_Mutation p.P74L 0.10 tolerated_low_confidence(0.12) possibly_damaging(0.474) TCGA-D3-A3C8-06 3 113286433 113286433 C T SIDT1 Missense_Mutation p.P131S 0.08 tolerated(0.15) probably_damaging(1) TCGA-D3-A3C8-06 3 119120710 119120710 G T ARHGAP31 Missense_Mutation p.G371C 0.09 deleterious(0) probably_damaging(0.979) TCGA-D3-A3C8-06 3 123451904 123451904 G A MYLK Missense_Mutation p.T452I 0.14 tolerated(0.2) benign(0.069) TCGA-D3-A3C8-06 3 126708270 126708270 C T PLXNA1 Silent p.F278F 0.09 TCGA-D3-A3C8-06 3 130292980 130292980 C T COL6A6 Missense_Mutation p.P1053L 0.22 tolerated(0.33) benign(0.009) TCGA-D3-A3C8-06 3 13363271 13363271 C T NUP210 Missense_Mutation p.M1660I 0.09 tolerated(0.15) benign(0.002) TCGA-D3-A3C8-06 3 137781655 137781655 G A DZIP1L 3'UTR 0.13 TCGA-D3-A3C8-06 3 154801990 154801990 G A MME Missense_Mutation p.D12N 0.08 deleterious(0) benign(0.149) TCGA-D3-A3C8-06 3 164735569 164735569 C T SI Missense_Mutation p.A1205T 0.27 deleterious(0.02) benign(0.046) TCGA-D3-A3C8-06 3 164907674 164907674 G A SLITRK3 Silent p.S315S 0.12 TCGA-D3-A3C8-06 3 167170742 167170742 C T SERPINI2 Missense_Mutation p.D316N 0.09 tolerated(0.27) benign(0.373) TCGA-D3-A3C8-06 3 195022715 195022715 G A ACAP2 Silent p.I435I 0.10 TCGA-D3-A3C8-06 3 3131906 3131906 G A IL5RA Intron 0.21 TCGA-D3-A3C8-06 3 38052813 38052813 G A PLCD1 Silent p.L249L 0.12 TCGA-D3-A3C8-06 3 38595873 38595873 G A SCN5A Silent p.I1570I 0.09 TCGA-D3-A3C8-06 3 38607966 38607966 C T SCN5A Nonsense_Mutation p.W1258* 0.09 TCGA-D3-A3C8-06 3 42774963 42774963 G C CCDC13 Missense_Mutation p.R504G 0.08 tolerated(0.09) benign(0.058) TCGA-D3-A3C8-06 3 46415421 46415421 C T CCR5 Missense_Mutation p.T343I 0.12 deleterious(0.01) probably_damaging(0.912) TCGA-D3-A3C8-06 3 48623789 48623789 G T COL7A1 Missense_Mutation p.P1176T 0.09 unknown(0) TCGA-D3-A3C8-06 3 49933689 49933689 G A MST1R Missense_Mutation p.P863L 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A3C8-06 3 52651513 52651513 T C PBRM1 Missense_Mutation p.N528S 0.14 tolerated(0.72) possibly_damaging(0.782) TCGA-D3-A3C8-06 3 53886994 53886994 C T IL17RB Missense_Mutation p.P151S 0.08 tolerated(0.15) probably_damaging(0.971) TCGA-D3-A3C8-06 3 56330089 56330089 C T ERC2 Silent p.V344V 0.11 TCGA-D3-A3C8-06 3 62535683 62535683 G A CADPS Missense_Mutation p.R621W 0.12 deleterious(0) possibly_damaging(0.745) TCGA-D3-A3C8-06 3 96706605 96706605 C T EPHA6 Silent p.V294V 0.10 TCGA-D3-A3C8-06 3 97251245 97251245 G A EPHA6 Silent p.G748G 0.16 TCGA-D3-A3C8-06 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.08 deleterious(0.01) possibly_damaging(0.595) TCGA-D3-A3C8-06 3 98110187 98110187 G A OR5K3 Missense_Mutation p.M226I 0.12 tolerated(0.15) benign(0.009) TCGA-D3-A3C8-06 3 99513415 99513415 G A COL8A1 Missense_Mutation p.D224N 0.12 tolerated(0.06) unknown(0) TCGA-D3-A3C8-06 4 100264011 100264011 C T ADH1C Missense_Mutation p.E257K 0.09 probably_damaging(0.999) TCGA-D3-A3C8-06 4 108614937 108614937 G T PAPSS1 Missense_Mutation p.P134H 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 4 110788890 110788890 C T LRIT3 Missense_Mutation p.P228L 0.11 tolerated(0.13) benign(0.155) TCGA-D3-A3C8-06 4 126329778 126329778 C T FAT4 Nonsense_Mutation p.R1917* 0.13 TCGA-D3-A3C8-06 4 126411353 126411353 G A FAT4 Missense_Mutation p.G4459E 0.10 probably_damaging(1) TCGA-D3-A3C8-06 4 134072190 134072190 G A PCDH10 Missense_Mutation p.E299K 0.14 deleterious(0.04) benign(0.257) TCGA-D3-A3C8-06 4 140058853 140058853 C A ELF2 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.57) TCGA-D3-A3C8-06 4 149115960 149115960 G A NR3C2 Nonsense_Mutation p.R651* 0.09 TCGA-D3-A3C8-06 4 155488914 155488914 G A FGB Missense_Mutation p.M220I 0.10 tolerated(0.17) benign(0.002) TCGA-D3-A3C8-06 4 155506675 155506675 G A FGA Intron 0.14 TCGA-D3-A3C8-06 4 164393292 164393292 G A TKTL2 Missense_Mutation p.S532F 0.09 tolerated(0.22) benign(0.033) TCGA-D3-A3C8-06 4 166795173 166795173 G A TLL1 Silent p.G39G 0.08 TCGA-D3-A3C8-06 4 175898378 175898378 C T ADAM29 Missense_Mutation p.H568Y 0.09 deleterious(0) probably_damaging(0.946) TCGA-D3-A3C8-06 4 186548105 186548105 C T SORBS2 Missense_Mutation p.G368D 0.11 deleterious(0.03) benign(0.36) TCGA-D3-A3C8-06 4 188924289 188924289 G T ZFP42 Missense_Mutation p.V110F 0.09 tolerated(0.08) benign(0.042) TCGA-D3-A3C8-06 4 189012810 189012810 G A TRIML2 Missense_Mutation p.S294L 0.10 tolerated(0.53) possibly_damaging(0.843) TCGA-D3-A3C8-06 4 189022221 189022221 C T TRIML2 Missense_Mutation p.E107K 0.13 tolerated(0.54) benign(0.155) TCGA-D3-A3C8-06 4 189068223 189068223 C T TRIML1 Silent p.L368L 0.10 TCGA-D3-A3C8-06 4 22749095 22749095 G A GBA3 Missense_Mutation p.D155N 0.16 tolerated(0.11) benign(0.048) TCGA-D3-A3C8-06 4 25785899 25785899 T G SEL1L3 Missense_Mutation p.K744T 0.09 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A3C8-06 4 46930735 46930735 T C GABRA4 Missense_Mutation p.N391S 0.18 tolerated(0.09) possibly_damaging(0.669) TCGA-D3-A3C8-06 4 47560170 47560170 T G ATP10D Missense_Mutation p.F772V 0.08 deleterious(0) probably_damaging(0.973) TCGA-D3-A3C8-06 4 69535692 69535692 C T UGT2B15 Missense_Mutation p.M215I 0.09 tolerated(0.13) benign(0.072) TCGA-D3-A3C8-06 4 70505165 70505165 G A UGT2A2 Missense_Mutation p.S65L 0.11 deleterious(0.01) possibly_damaging(0.844) TCGA-D3-A3C8-06 4 72222842 72222842 C T SLC4A4 Missense_Mutation p.S223F 0.14 deleterious(0) probably_damaging(0.979) TCGA-D3-A3C8-06 4 74283258 74283258 C T ALB Missense_Mutation p.R434C 0.17 deleterious(0.03) benign(0.388) TCGA-D3-A3C8-06 4 75937875 75937875 C T PARM1 Missense_Mutation p.S95L 0.12 tolerated(0.23) benign(0.007) TCGA-D3-A3C8-06 4 98902377 98902377 C T STPG2 Silent p.L235L 0.09 TCGA-D3-A3C8-06 5 112174857 112174857 C T APC Missense_Mutation p.S1189L 0.11 benign(0.048) TCGA-D3-A3C8-06 5 11732292 11732292 C T CTNND2 Missense_Mutation p.E44K 0.12 deleterious(0.04) benign(0.05) TCGA-D3-A3C8-06 5 121759071 121759071 G A SNCAIP Silent p.V213V 0.09 TCGA-D3-A3C8-06 5 1232359 1232359 C T SLC6A18 Silent p.I62I 0.19 TCGA-D3-A3C8-06 5 123983748 123983748 G A ZNF608 Nonsense_Mutation p.Q777* 0.10 TCGA-D3-A3C8-06 5 133493385 133493385 G A SKP1 3'UTR 0.21 TCGA-D3-A3C8-06 5 13786434 13786434 C T DNAH5 Missense_Mutation p.E2892K 0.14 benign(0.002) TCGA-D3-A3C8-06 5 13811798 13811798 G A DNAH5 Silent p.I2455I 0.09 TCGA-D3-A3C8-06 5 13859615 13859615 C T DNAH5 Nonsense_Mutation p.W1632* 0.09 TCGA-D3-A3C8-06 5 140076573 140076573 C T HARS2 Missense_Mutation p.S291F 0.10 deleterious(0.03) possibly_damaging(0.511) TCGA-D3-A3C8-06 5 140076574 140076574 C T HARS2 Silent p.S291S 0.10 TCGA-D3-A3C8-06 5 140175159 140175159 G A PCDHA2 Missense_Mutation p.E204K 0.11 tolerated_low_confidence(0.11) benign(0.007) TCGA-D3-A3C8-06 5 140176128 140176128 G A PCDHA2 Missense_Mutation p.E527K 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.68) TCGA-D3-A3C8-06 5 140188523 140188523 C T PCDHA4 Missense_Mutation p.S584L 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.783) TCGA-D3-A3C8-06 5 140209354 140209354 G A PCDHA6 Missense_Mutation p.D560N 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A3C8-06 5 140476511 140476511 G A PCDHB2 Missense_Mutation p.V713M 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.827) TCGA-D3-A3C8-06 5 140515816 140515816 G A PCDHB5 Missense_Mutation p.R267Q 0.11 tolerated_low_confidence(0.09) benign(0.022) TCGA-D3-A3C8-06 5 140604005 140604005 G A PCDHB14 Missense_Mutation p.E310K 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3C8-06 5 140712498 140712498 C T PCDHGA1 Silent p.F749F 0.11 TCGA-D3-A3C8-06 5 149361301 149361301 G A SLC26A2 Silent p.A715A 0.09 TCGA-D3-A3C8-06 5 159344483 159344483 G A ADRA1B Missense_Mutation p.D191N 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A3C8-06 5 159776679 159776679 C T C1QTNF2 Silent p.G163G 0.14 TCGA-D3-A3C8-06 5 168201324 168201324 T C SLIT3 Missense_Mutation p.N404S 0.08 tolerated(0.31) benign(0.012) TCGA-D3-A3C8-06 5 169535226 169535226 G A FOXI1 Missense_Mutation p.D250N 0.08 tolerated(0.27) possibly_damaging(0.628) TCGA-D3-A3C8-06 5 175305757 175305757 G A CPLX2 Missense_Mutation p.M5I 0.11 tolerated(0.12) benign(0.002) TCGA-D3-A3C8-06 5 176016402 176016402 C T CDHR2 Missense_Mutation p.S1027F 0.15 deleterious(0.01) benign(0.309) TCGA-D3-A3C8-06 5 179150759 179150759 C T CANX Silent p.I499I 0.08 TCGA-D3-A3C8-06 5 19747232 19747232 T A CDH18 Missense_Mutation p.K114N 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 5 32090176 32090176 G A PDZD2 Missense_Mutation p.G2208R 0.08 tolerated(0.49) benign(0.235) TCGA-D3-A3C8-06 5 32712194 32712194 G A NPR3 Silent p.E104E 0.10 TCGA-D3-A3C8-06 5 36168422 36168422 C T SKP2 Missense_Mutation p.R182C 0.10 tolerated(0.05) possibly_damaging(0.861) TCGA-D3-A3C8-06 5 38482185 38482185 G A LIFR Missense_Mutation p.R936C 0.10 deleterious(0.03) benign(0.001) TCGA-D3-A3C8-06 5 40853995 40853995 C T CARD6 Missense_Mutation p.S854F 0.20 deleterious(0.04) benign(0.048) TCGA-D3-A3C8-06 5 41015563 41015563 C T MROH2B Missense_Mutation p.E968K 0.19 deleterious(0) benign(0.09) TCGA-D3-A3C8-06 5 44305163 44305163 C T FGF10 Silent p.R187R 0.11 TCGA-D3-A3C8-06 5 64769518 64769518 G A ADAMTS6 5'UTR 0.10 TCGA-D3-A3C8-06 6 100957956 100957956 G A ASCC3 Missense_Mutation p.P2105S 0.07 deleterious(0.05) benign(0.314) TCGA-D3-A3C8-06 6 102307216 102307216 C T GRIK2 Nonsense_Mutation p.R458* 0.15 TCGA-D3-A3C8-06 6 10926589 10926589 G A SYCP2L Silent p.T412T 0.09 TCGA-D3-A3C8-06 6 110777904 110777904 G A SLC22A16 Missense_Mutation p.P124S 0.11 tolerated(0.5) benign(0.088) TCGA-D3-A3C8-06 6 118556686 118556686 C T SLC35F1 Silent p.L122L 0.10 TCGA-D3-A3C8-06 6 128643452 128643452 G A PTPRK Missense_Mutation p.S76F 0.10 deleterious(0) benign(0.228) TCGA-D3-A3C8-06 6 129634166 129634166 G A LAMA2 Missense_Mutation p.G1112E 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 6 129636653 129636653 C T LAMA2 Silent p.P1196P 0.15 TCGA-D3-A3C8-06 6 131199319 131199319 C T EPB41L2 Missense_Mutation p.M656I 0.16 deleterious(0) possibly_damaging(0.785) TCGA-D3-A3C8-06 6 132645130 132645130 G A MOXD1 Silent p.I351I 0.18 TCGA-D3-A3C8-06 6 134349572 134349572 G A SLC2A12 Missense_Mutation p.S464F 0.12 deleterious(0) probably_damaging(0.988) TCGA-D3-A3C8-06 6 151789731 151789731 C T C6orf211 Missense_Mutation p.S271F 0.08 tolerated(0.07) possibly_damaging(0.492) TCGA-D3-A3C8-06 6 152737610 152737610 C T SYNE1 Missense_Mutation p.E1988K 0.06 probably_damaging(0.995) TCGA-D3-A3C8-06 6 157528921 157528921 C T ARID1B Missense_Mutation p.L2216F 0.13 probably_damaging(0.997) TCGA-D3-A3C8-06 6 159653040 159653040 G A FNDC1 Missense_Mutation p.G499E 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A3C8-06 6 160240320 160240320 C T PNLDC1 Missense_Mutation p.P479S 0.13 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C8-06 6 160998240 160998240 C T LPA Missense_Mutation p.G1520E 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 6 161022029 161022029 C T LPA Missense_Mutation p.R1016Q 0.12 tolerated(0.58) benign(0.031) TCGA-D3-A3C8-06 6 165715342 165715342 C T C6orf118 Missense_Mutation p.E157K 0.14 tolerated(0.41) benign(0.008) TCGA-D3-A3C8-06 6 167352439 167352439 G A RNASET2 Silent p.S130S 0.15 TCGA-D3-A3C8-06 6 167709569 167709569 C T UNC93A Silent p.L107L 0.12 TCGA-D3-A3C8-06 6 168467471 168467471 C T FRMD1 Missense_Mutation p.R142Q 0.11 deleterious(0.02) probably_damaging(0.962) TCGA-D3-A3C8-06 6 28483476 28483476 C A GPX6 Silent p.L15L 0.18 TCGA-D3-A3C8-06 6 30075913 30075913 G A TRIM31 Missense_Mutation p.P267L 0.10 tolerated(0.11) benign(0.24) TCGA-D3-A3C8-06 6 31541101 31541101 G A LTA Silent p.T83T 0.14 TCGA-D3-A3C8-06 6 31851634 31851634 C T EHMT2 Silent p.E955E 0.10 TCGA-D3-A3C8-06 6 31912779 31912779 C T C2 Silent p.F684F 0.09 TCGA-D3-A3C8-06 6 32010370 32010370 G A TNXB Silent p.I453I 0.12 TCGA-D3-A3C8-06 6 32039861 32039861 G A TNXB Silent p.I1632I 0.10 TCGA-D3-A3C8-06 6 33289292 33289292 A T DAXX Missense_Mutation p.F87Y 0.09 tolerated(0.17) probably_damaging(0.999) TCGA-D3-A3C8-06 6 33374381 33374381 C T KIFC1 Missense_Mutation p.P614S 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 6 37186316 37186316 G A TMEM217 Missense_Mutation p.S164F 0.12 tolerated(0.5) benign(0.109) TCGA-D3-A3C8-06 6 38718261 38718261 G A DNAH8 Missense_Mutation p.D218N 0.15 benign(0.375) TCGA-D3-A3C8-06 6 39881105 39881105 C T MOCS1 Missense_Mutation p.G238D 0.10 tolerated(1) benign(0.002) TCGA-D3-A3C8-06 6 4032432 4032432 C T PRPF4B Silent p.S227S 0.08 TCGA-D3-A3C8-06 6 43034129 43034129 C T KLC4 Silent p.I237I 0.12 TCGA-D3-A3C8-06 6 43267408 43267408 C T SLC22A7 Silent p.L183L 0.10 TCGA-D3-A3C8-06 6 47649528 47649528 G A GPR111 Missense_Mutation p.M411I 0.12 tolerated(0.23) benign(0.022) TCGA-D3-A3C8-06 6 47649918 47649918 C T GPR111 Silent p.L541L 0.15 TCGA-D3-A3C8-06 6 52876895 52876895 G A ICK Missense_Mutation p.P428L 0.09 tolerated(0.19) benign(0.007) TCGA-D3-A3C8-06 6 76063340 76063340 C T FILIP1 Missense_Mutation p.E182K 0.09 tolerated(0.17) probably_damaging(0.983) TCGA-D3-A3C8-06 6 87725541 87725541 C T HTR1E Silent p.H163H 0.11 TCGA-D3-A3C8-06 6 9908750 9908750 C T OFCC1 Splice_Site p.X115_splice 0.09 TCGA-D3-A3C8-06 7 100176275 100176275 G A LRCH4 Nonsense_Mutation p.Q245* 0.22 TCGA-D3-A3C8-06 7 100244237 100244237 C T ACTL6B Silent p.G350G 0.13 TCGA-D3-A3C8-06 7 100685955 100685955 C T MUC17 Missense_Mutation p.T3753I 0.10 possibly_damaging(0.507) TCGA-D3-A3C8-06 7 100699490 100699490 A C MUC17 Missense_Mutation p.H4460P 0.10 unknown(0) TCGA-D3-A3C8-06 7 112423814 112423814 G A TMEM168 Missense_Mutation p.S356L 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A3C8-06 7 117199643 117199643 C T CFTR Silent p.I506I 0.09 TCGA-D3-A3C8-06 7 117865010 117865010 G A ANKRD7 Silent p.K42K 0.13 TCGA-D3-A3C8-06 7 123092907 123092907 G A IQUB Missense_Mutation p.P756S 0.16 tolerated(0.06) possibly_damaging(0.893) TCGA-D3-A3C8-06 7 123264780 123264780 C T ASB15 Silent p.V203V 0.17 TCGA-D3-A3C8-06 7 124503575 124503575 G A POT1 Silent p.F125F 0.13 TCGA-D3-A3C8-06 7 126173281 126173281 G A GRM8 Missense_Mutation p.P719S 0.16 tolerated(0.21) probably_damaging(1) TCGA-D3-A3C8-06 7 126173845 126173845 C T GRM8 Missense_Mutation p.G531R 0.11 deleterious(0.01) probably_damaging(1) TCGA-D3-A3C8-06 7 127255418 127255418 C T PAX4 Intron 0.17 TCGA-D3-A3C8-06 7 128120717 128120717 G A METTL2B Missense_Mutation p.G192E 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A3C8-06 7 128851577 128851577 C T SMO Silent p.P634P 0.14 TCGA-D3-A3C8-06 7 128851578 128851578 C T SMO Nonsense_Mutation p.Q635* 0.13 TCGA-D3-A3C8-06 7 132169747 132169747 C T PLXNA4 Intron 0.16 TCGA-D3-A3C8-06 7 141672650 141672650 C T TAS2R38 Missense_Mutation p.M280I 0.14 deleterious(0.05) benign(0.326) TCGA-D3-A3C8-06 7 141673373 141673373 C T TAS2R38 Silent p.V39V 0.18 TCGA-D3-A3C8-06 7 142021294 142021294 C T TRBV5-1 Missense_Mutation p.R92C 0.28 tolerated(0.18) benign(0.035) TCGA-D3-A3C8-06 7 142045530 142045530 G A TRBV4-2 Missense_Mutation p.E20K 0.08 deleterious(0.01) benign(0.281) TCGA-D3-A3C8-06 7 142120037 142120037 G A TRBV7-7 Missense_Mutation p.P44S 0.17 deleterious(0.02) possibly_damaging(0.687) TCGA-D3-A3C8-06 7 142162072 142162072 G A TRBV6-6 Missense_Mutation p.S68L 0.21 deleterious(0) possibly_damaging(0.486) TCGA-D3-A3C8-06 7 142499830 142499830 G A TRBC2 Missense_Mutation p.E150K 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3C8-06 7 143095078 143095078 C T EPHA1 Missense_Mutation p.R517Q 0.19 tolerated(0.38) probably_damaging(0.999) TCGA-D3-A3C8-06 7 143771496 143771496 C T OR2A25 Missense_Mutation p.L62F 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A3C8-06 7 14378223 14378223 C T DGKB Missense_Mutation p.R681Q 0.12 deleterious(0.04) probably_damaging(0.984) TCGA-D3-A3C8-06 7 143807335 143807335 C T OR2A2 Silent p.I220I 0.14 TCGA-D3-A3C8-06 7 150217150 150217150 G A GIMAP7 Missense_Mutation p.G30R 0.14 deleterious(0.02) probably_damaging(0.94) TCGA-D3-A3C8-06 7 150325545 150325545 C T GIMAP6 Silent p.G47G 0.10 TCGA-D3-A3C8-06 7 150417986 150417986 G A GIMAP1 Silent p.E298E 0.21 TCGA-D3-A3C8-06 7 150695451 150695451 G A NOS3 Missense_Mutation p.D197N 0.12 deleterious(0) probably_damaging(0.988) TCGA-D3-A3C8-06 7 158695278 158695278 C T WDR60 Missense_Mutation p.P450L 0.10 deleterious(0.04) benign(0.012) TCGA-D3-A3C8-06 7 21727062 21727062 C T DNAH11 Silent p.F1954F 0.23 TCGA-D3-A3C8-06 7 23740447 23740447 A C FAM221A Missense_Mutation p.E263A 0.11 tolerated(0.09) benign(0.162) TCGA-D3-A3C8-06 7 2577997 2577997 G A BRAT1 Silent p.L724L 0.22 TCGA-D3-A3C8-06 7 27182905 27182905 G A HOXA5 Missense_Mutation p.P108S 0.13 tolerated(0.84) benign(0) TCGA-D3-A3C8-06 7 2962835 2962835 G A CARD11 Silent p.F691F 0.12 TCGA-D3-A3C8-06 7 30706841 30706841 C T CRHR2 Intron 0.10 TCGA-D3-A3C8-06 7 30891837 30891837 C T FAM188B Missense_Mutation p.S518L 0.12 deleterious(0) probably_damaging(0.971) TCGA-D3-A3C8-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.10 TCGA-D3-A3C8-06 7 34884511 34884511 G A NPSR1 Missense_Mutation p.G254E 0.22 tolerated(0.35) possibly_damaging(0.597) TCGA-D3-A3C8-06 7 36336730 36336730 A T EEPD1 Missense_Mutation p.N482Y 0.14 deleterious(0) possibly_damaging(0.701) TCGA-D3-A3C8-06 7 40220591 40220591 T G SUGCT Missense_Mutation p.L56R 0.07 deleterious(0) probably_damaging(0.979) TCGA-D3-A3C8-06 7 4152949 4152949 G A SDK1 Missense_Mutation p.G1155R 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 7 42004786 42004786 G C GLI3 Missense_Mutation p.F1295L 0.17 deleterious_low_confidence(0.05) benign(0.101) TCGA-D3-A3C8-06 7 4218208 4218208 C T SDK1 Silent p.V1696V 0.20 TCGA-D3-A3C8-06 7 47882731 47882731 C T PKD1L1 Missense_Mutation p.M1758I 0.19 deleterious(0.01) benign(0.01) TCGA-D3-A3C8-06 7 47921604 47921604 G A PKD1L1 Silent p.D1115D 0.20 TCGA-D3-A3C8-06 7 53103987 53103987 G A POM121L12 Missense_Mutation p.R208Q 0.16 tolerated(0.43) benign(0.022) TCGA-D3-A3C8-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.12 deleterious(0) possibly_damaging(0.869) TCGA-D3-A3C8-06 7 70246732 70246732 C T AUTS2 Silent p.F712F 0.13 TCGA-D3-A3C8-06 7 81667445 81667445 C T CACNA2D1 Missense_Mutation p.G329E 0.11 tolerated(0.11) probably_damaging(0.994) TCGA-D3-A3C8-06 7 82579668 82579668 C T PCLO Silent p.K3412K 0.12 TCGA-D3-A3C8-06 7 82580151 82580151 G A PCLO Silent p.I3251I 0.15 TCGA-D3-A3C8-06 7 83031976 83031976 C T SEMA3E Missense_Mutation p.G372E 0.25 deleterious(0) probably_damaging(0.933) TCGA-D3-A3C8-06 7 86468465 86468465 C T GRM3 Silent p.T545T 0.23 TCGA-D3-A3C8-06 7 86468786 86468786 C T GRM3 Silent p.F652F 0.17 TCGA-D3-A3C8-06 7 86469069 86469069 C T GRM3 Silent p.L747L 0.19 TCGA-D3-A3C8-06 7 87092091 87092091 C T ABCB4 Missense_Mutation p.G90E 0.13 tolerated(0.63) benign(0.003) TCGA-D3-A3C8-06 7 92734271 92734271 G A SAMD9 Silent p.F380F 0.10 TCGA-D3-A3C8-06 7 93108793 93108793 A T CALCR Missense_Mutation p.F44L 0.10 tolerated(0.59) benign(0.02) TCGA-D3-A3C8-06 8 100654473 100654473 G A VPS13B Silent p.G1910G 0.08 TCGA-D3-A3C8-06 8 100829870 100829870 C T VPS13B Missense_Mutation p.R2759W 0.08 deleterious(0) possibly_damaging(0.689) TCGA-D3-A3C8-06 8 10466091 10466091 C T RP1L1 Silent p.E1839E 0.12 TCGA-D3-A3C8-06 8 10467446 10467446 C T RP1L1 Missense_Mutation p.E1388K 0.10 unknown(0) TCGA-D3-A3C8-06 8 105360908 105360908 C T DCSTAMP Missense_Mutation p.S43L 0.10 tolerated(0.57) benign(0.004) TCGA-D3-A3C8-06 8 110100010 110100010 C T TRHR Missense_Mutation p.S90F 0.08 tolerated(0.17) benign(0.052) TCGA-D3-A3C8-06 8 124265833 124265833 A G ZHX1 Missense_Mutation p.L785P 0.12 deleterious(0.02) probably_damaging(1) TCGA-D3-A3C8-06 8 130761751 130761751 C T GSDMC Missense_Mutation p.D412N 0.12 tolerated(0.41) benign(0.158) TCGA-D3-A3C8-06 8 132051665 132051665 G A ADCY8 Silent p.I305I 0.15 TCGA-D3-A3C8-06 8 13965738 13965738 T G SGCZ Missense_Mutation p.E185A 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3C8-06 8 13965739 13965739 C T SGCZ Missense_Mutation p.E185K 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A3C8-06 8 141231633 141231633 G A TRAPPC9 Silent p.V925V 0.23 TCGA-D3-A3C8-06 8 145584592 145584592 G T SLC52A2 Missense_Mutation p.G419C 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 8 32621337 32621337 C T NRG1 Missense_Mutation p.S452L 0.14 tolerated(0.12) probably_damaging(0.942) TCGA-D3-A3C8-06 8 33406331 33406331 G A RNF122 Silent p.P136P 0.09 TCGA-D3-A3C8-06 8 35647876 35647876 G A UNC5D Splice_Site p.X886_splice 0.11 TCGA-D3-A3C8-06 8 39613303 39613303 G A ADAM2 Missense_Mutation p.H581Y 0.16 tolerated(1) benign(0.005) TCGA-D3-A3C8-06 8 39780096 39780096 C T IDO1 Missense_Mutation p.R155C 0.15 deleterious(0) probably_damaging(0.942) TCGA-D3-A3C8-06 8 400073 400073 C T FBXO25 Silent p.I155I 0.10 TCGA-D3-A3C8-06 8 43173695 43173695 G A POTEA RNA 0.15 TCGA-D3-A3C8-06 8 48878868 48878868 C T MCM4 Silent p.D318D 0.25 TCGA-D3-A3C8-06 8 53076622 53076622 C T ST18 Missense_Mutation p.E442K 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A3C8-06 8 56436207 56436207 C T XKR4 Silent p.F458F 0.11 TCGA-D3-A3C8-06 8 62289207 62289207 G A CLVS1 Missense_Mutation p.E167K 0.09 deleterious(0) probably_damaging(0.992) TCGA-D3-A3C8-06 8 94809438 94809438 G A TMEM67 Missense_Mutation p.G646E 0.11 tolerated(0.08) benign(0.354) TCGA-D3-A3C8-06 8 95143179 95143179 C T CDH17 Missense_Mutation p.E737K 0.15 deleterious(0.02) possibly_damaging(0.742) TCGA-D3-A3C8-06 8 95683690 95683690 C T ESRP1 Nonsense_Mutation p.R415* 0.09 TCGA-D3-A3C8-06 8 95894423 95894423 A G CCNE2 Silent p.F346F 0.08 TCGA-D3-A3C8-06 8 98288839 98288839 C T TSPYL5 Missense_Mutation p.G412R 0.11 tolerated(0.46) benign(0.03) TCGA-D3-A3C8-06 9 104238152 104238152 C T TMEM246 3'UTR 0.12 TCGA-D3-A3C8-06 9 107360965 107360965 G A OR13C5 Missense_Mutation p.R244C 0.12 deleterious(0) benign(0.05) TCGA-D3-A3C8-06 9 116136431 116136431 G A HDHD3 Silent p.G68G 0.16 TCGA-D3-A3C8-06 9 119033629 119033629 A T PAPPA Missense_Mutation p.M963L 0.12 tolerated(0.17) benign(0.008) TCGA-D3-A3C8-06 9 127920551 127920551 A T PPP6C Missense_Mutation p.S153R 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 9 129728188 129728188 C A RALGPS1 Silent p.A41A 0.07 TCGA-D3-A3C8-06 9 130075766 130075766 C T GARNL3 Silent p.F122F 0.11 TCGA-D3-A3C8-06 9 131284953 131284953 C T GLE1 Silent p.L147L 0.19 TCGA-D3-A3C8-06 9 131345360 131345360 C T SPTAN1 Missense_Mutation p.P604L 0.16 tolerated(0.32) probably_damaging(0.968) TCGA-D3-A3C8-06 9 133553968 133553968 C T PRDM12 Missense_Mutation p.T208I 0.16 tolerated(0.05) benign(0.058) TCGA-D3-A3C8-06 9 14775892 14775892 C T FREM1 Silent p.G1584G 0.10 TCGA-D3-A3C8-06 9 21201699 21201699 C T IFNA7 Missense_Mutation p.E156K 0.11 deleterious(0.05) benign(0.211) TCGA-D3-A3C8-06 9 21216942 21216942 G A IFNA16 Silent p.A121A 0.08 TCGA-D3-A3C8-06 9 21350663 21350663 T G IFNA6 Missense_Mutation p.E75A 0.12 deleterious(0) benign(0.052) TCGA-D3-A3C8-06 9 21350664 21350664 C G IFNA6 Missense_Mutation p.E75Q 0.16 tolerated(1) benign(0.001) TCGA-D3-A3C8-06 9 21481228 21481228 C T IFNE Missense_Mutation p.E156K 0.09 tolerated(0.36) probably_damaging(0.999) TCGA-D3-A3C8-06 9 23704929 23704929 G A ELAVL2 Silent p.V158V 0.11 TCGA-D3-A3C8-06 9 65506411 65506411 C T SPATA31A7 Nonsense_Mutation p.W383* 0.14 TCGA-D3-A3C8-06 9 72047490 72047490 C T APBA1 Missense_Mutation p.E802K 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 9 78973740 78973740 G A PCSK5 Missense_Mutation p.D1829N 0.11 deleterious(0) possibly_damaging(0.859) TCGA-D3-A3C8-06 9 88967772 88967772 C T ZCCHC6 Missense_Mutation p.E115K 0.11 deleterious_low_confidence(0) benign(0.371) TCGA-D3-A3C8-06 9 93376091 93376091 C T DIRAS2 Missense_Mutation p.D7N 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 X 101382337 101382337 G A TCEAL2 Missense_Mutation p.D179N 0.09 deleterious(0) possibly_damaging(0.822) TCGA-D3-A3C8-06 X 102317848 102317848 C T BEX1 Missense_Mutation p.D119N 0.09 tolerated(0.26) benign(0.17) TCGA-D3-A3C8-06 X 103431288 103431288 G A FAM199X Missense_Mutation p.E239K 0.10 tolerated(0.12) benign(0.12) TCGA-D3-A3C8-06 X 106117028 106117028 C T TBC1D8B Missense_Mutation p.P1066S 0.11 tolerated(0.3) benign(0.001) TCGA-D3-A3C8-06 X 109694490 109694490 G A RGAG1 Silent p.V215V 0.09 TCGA-D3-A3C8-06 X 109694885 109694885 C T RGAG1 Missense_Mutation p.S347F 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 X 111874653 111874653 G A LHFPL1 Missense_Mutation p.P220S 0.10 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-D3-A3C8-06 X 117043429 117043429 C T KLHL13 Missense_Mutation p.D404N 0.15 tolerated(0.18) probably_damaging(0.997) TCGA-D3-A3C8-06 X 117054225 117054225 C T KLHL13 Missense_Mutation p.D120N 0.11 deleterious(0.01) benign(0.421) TCGA-D3-A3C8-06 X 117775215 117775215 G A DOCK11 Missense_Mutation p.E1403K 0.10 deleterious(0) probably_damaging(0.996) TCGA-D3-A3C8-06 X 118151710 118151710 T A LONRF3 3'UTR 0.19 TCGA-D3-A3C8-06 X 119388445 119388445 C T ZBTB33 Missense_Mutation p.S392L 0.08 tolerated(0.13) probably_damaging(0.996) TCGA-D3-A3C8-06 X 122769982 122769982 C T THOC2 Missense_Mutation p.D656N 0.12 deleterious(0) possibly_damaging(0.694) TCGA-D3-A3C8-06 X 123657236 123657236 C T TENM1 Missense_Mutation p.G1004E 0.10 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A3C8-06 X 123663788 123663788 A T TENM1 Silent p.T899T 0.11 TCGA-D3-A3C8-06 X 125298627 125298627 G A DCAF12L2 Silent p.F427F 0.11 TCGA-D3-A3C8-06 X 12734767 12734767 G A FRMPD4 Missense_Mutation p.G730E 0.09 deleterious_low_confidence(0.05) probably_damaging(0.964) TCGA-D3-A3C8-06 X 129203370 129203370 C T ELF4 Silent p.L364L 0.13 TCGA-D3-A3C8-06 X 135431576 135431576 C T GPR112 Missense_Mutation p.S1904F 0.17 deleterious(0) benign(0.165) TCGA-D3-A3C8-06 X 135593942 135593942 G A HTATSF1 Missense_Mutation p.E680K 0.14 deleterious_low_confidence(0) unknown(0) TCGA-D3-A3C8-06 X 140994545 140994545 C T MAGEC1 Missense_Mutation p.S452F 0.10 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A3C8-06 X 140995406 140995406 C T MAGEC1 Missense_Mutation p.S739F 0.09 tolerated_low_confidence(0.18) possibly_damaging(0.485) TCGA-D3-A3C8-06 X 140995819 140995819 G A MAGEC1 Missense_Mutation p.E877K 0.13 deleterious(0) unknown(0) TCGA-D3-A3C8-06 X 148037568 148037568 G A AFF2 Missense_Mutation p.D665N 0.08 tolerated(0.22) benign(0.308) TCGA-D3-A3C8-06 X 149639405 149639405 G A MAMLD1 Missense_Mutation p.M495I 0.10 tolerated(0.17) possibly_damaging(0.491) TCGA-D3-A3C8-06 X 149787544 149787544 G A MTM1 Missense_Mutation p.E126K 0.10 deleterious(0.05) probably_damaging(0.992) TCGA-D3-A3C8-06 X 151092698 151092698 G A MAGEA4 Missense_Mutation p.D188N 0.08 tolerated(0.13) possibly_damaging(0.496) TCGA-D3-A3C8-06 X 151424282 151424282 C T GABRA3 Silent p.L173L 0.10 TCGA-D3-A3C8-06 X 151869869 151869869 G A MAGEA6 Missense_Mutation p.D187N 0.09 tolerated(0.16) benign(0.201) TCGA-D3-A3C8-06 X 152226134 152226134 G A PNMA3 Missense_Mutation p.G241E 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A3C8-06 X 153225813 153225813 G A HCFC1 Silent p.P319P 0.31 TCGA-D3-A3C8-06 X 153628232 153628232 C T RPL10 Silent p.P93P 0.16 TCGA-D3-A3C8-06 X 16720909 16720909 G A CTPS2 Silent p.I39I 0.12 TCGA-D3-A3C8-06 X 16870694 16870694 G A RBBP7 Missense_Mutation p.H359Y 0.12 deleterious(0) possibly_damaging(0.887) TCGA-D3-A3C8-06 X 19368088 19368088 C T PDHA1 Missense_Mutation p.P89S 0.10 tolerated(0.52) benign(0.003) TCGA-D3-A3C8-06 X 26212336 26212336 G A MAGEB6 Missense_Mutation p.D125N 0.10 tolerated(0.15) possibly_damaging(0.811) TCGA-D3-A3C8-06 X 2931203 2931203 G A ARSH Silent p.T110T 0.10 TCGA-D3-A3C8-06 X 3021848 3021848 G A ARSF Missense_Mutation p.G383E 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3C8-06 X 30714753 30714753 G A GK Missense_Mutation p.E228K 0.10 tolerated(0.24) benign(0.002) TCGA-D3-A3C8-06 X 32834585 32834585 C T DMD Missense_Mutation p.R177K 0.11 benign(0.026) TCGA-D3-A3C8-06 X 34148532 34148532 C T FAM47A Missense_Mutation p.E622K 0.14 deleterious(0.03) probably_damaging(0.953) TCGA-D3-A3C8-06 X 34149091 34149091 C T FAM47A Silent p.G435G 0.13 TCGA-D3-A3C8-06 X 3592649 3592649 G A PRKX Missense_Mutation p.L109F 0.13 deleterious(0) probably_damaging(0.912) TCGA-D3-A3C8-06 X 44703829 44703829 G A DUSP21 Missense_Mutation p.E151K 0.12 tolerated(0.53) benign(0.02) TCGA-D3-A3C8-06 X 47306735 47306735 C T ZNF41 3'UTR 0.17 TCGA-D3-A3C8-06 X 49029805 49029805 G A PLP2 Missense_Mutation p.G107E 0.12 tolerated(0.27) benign(0.086) TCGA-D3-A3C8-06 X 50054018 50054018 C T CCNB3 Missense_Mutation p.A950V 0.11 tolerated(0.36) benign(0.231) TCGA-D3-A3C8-06 X 53223707 53223707 G A KDM5C Missense_Mutation p.R1218C 0.27 deleterious(0) possibly_damaging(0.453) TCGA-D3-A3C8-06 X 54020143 54020143 C T PHF8 Missense_Mutation p.R542Q 0.13 tolerated(0.29) benign(0.002) TCGA-D3-A3C8-06 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.08 TCGA-D3-A3C8-06 X 5947423 5947423 C T NLGN4X Missense_Mutation p.G175R 0.19 tolerated(0.06) probably_damaging(1) TCGA-D3-A3C8-06 X 72433929 72433929 G A NAP1L2 Missense_Mutation p.H134Y 0.12 tolerated(0.17) probably_damaging(0.997) TCGA-D3-A3C8-06 X 76938476 76938476 G A ATRX Missense_Mutation p.H758Y 0.08 benign(0.081) TCGA-D3-A3C8-06 X 76939391 76939391 C T ATRX Missense_Mutation p.E453K 0.08 benign(0.022) TCGA-D3-A3C8-06 X 84363843 84363843 C T SATL1 Missense_Mutation p.M44I 0.22 tolerated(0.16) benign(0.043) TCGA-D3-A3CB-06 10 44871439 44871439 C T CXCL12 3'Flank 0.10 TCGA-D3-A3CB-06 10 46261178 46261178 G A FAM21C Missense_Mutation p.A597T 0.09 tolerated(0.95) benign(0.001) TCGA-D3-A3CB-06 10 63850777 63850777 G A ARID5B Missense_Mutation p.E519K 0.18 tolerated(0.91) benign(0) TCGA-D3-A3CB-06 10 82045326 82045326 G A MAT1A Silent p.I37I 0.13 TCGA-D3-A3CB-06 11 101762115 101762115 A T ANGPTL5 Silent p.L354L 0.22 TCGA-D3-A3CB-06 11 113933991 113933991 G A ZBTB16 5'UTR 0.27 TCGA-D3-A3CB-06 11 118965752 118965752 G A H2AFX Missense_Mutation p.P118L 0.30 deleterious_low_confidence(0.01) benign(0.15) TCGA-D3-A3CB-06 11 124440012 124440012 G A OR8A1 Silent p.R16R 0.16 TCGA-D3-A3CB-06 11 16837726 16837726 G A PLEKHA7 Missense_Mutation p.S651L 0.26 deleterious(0.02) possibly_damaging(0.833) TCGA-D3-A3CB-06 11 16838466 16838466 G A PLEKHA7 Missense_Mutation p.P583S 0.19 tolerated(0.57) benign(0.015) TCGA-D3-A3CB-06 11 3063454 3063454 G A CARS Missense_Mutation p.P103S 0.14 tolerated(0.17) benign(0.015) TCGA-D3-A3CB-06 11 4388619 4388619 C T OR52B4 Missense_Mutation p.E303K 0.17 tolerated(0.14) benign(0.009) TCGA-D3-A3CB-06 11 4594542 4594542 C A C11orf40 Missense_Mutation p.R101M 0.16 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-D3-A3CB-06 11 4903473 4903473 C T OR51T1 Missense_Mutation p.S142L 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A3CB-06 11 55798432 55798432 G A OR5AS1 Missense_Mutation p.D180N 0.18 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A3CB-06 11 55798797 55798797 C T OR5AS1 Silent p.L301L 0.13 TCGA-D3-A3CB-06 11 55890127 55890127 C T OR8H3 Silent p.S93S 0.19 TCGA-D3-A3CB-06 11 6236022 6236022 G A FAM160A2 Missense_Mutation p.R793C 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A3CB-06 11 6260614 6260614 G A CNGA4 Silent p.R21R 0.20 TCGA-D3-A3CB-06 11 66283032 66283032 C T BBS1 Silent p.L152L 0.11 TCGA-D3-A3CB-06 11 6867544 6867544 C T OR10A5 Missense_Mutation p.P211S 0.24 deleterious(0.01) probably_damaging(1) TCGA-D3-A3CB-06 11 73804914 73804914 G A C2CD3 Silent p.F1097F 0.16 TCGA-D3-A3CB-06 11 75442221 75442221 G A MOGAT2 Missense_Mutation p.E299K 0.19 deleterious(0.03) possibly_damaging(0.718) TCGA-D3-A3CB-06 11 82924274 82924274 G A ANKRD42 Intron 0.14 TCGA-D3-A3CB-06 11 83691581 83691581 C T DLG2 Missense_Mutation p.G342R 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A3CB-06 11 8747751 8747751 G A ST5 Missense_Mutation p.S449F 0.24 deleterious(0) benign(0.157) TCGA-D3-A3CB-06 12 121458456 121458456 C T OASL Missense_Mutation p.D485N 0.11 tolerated(0.38) benign(0.09) TCGA-D3-A3CB-06 12 123297851 123297851 C T CCDC62 Missense_Mutation p.S629L 0.16 deleterious(0) probably_damaging(0.996) TCGA-D3-A3CB-06 12 126003993 126003993 G A TMEM132B Missense_Mutation p.G367E 0.09 tolerated(0.15) benign(0.057) TCGA-D3-A3CB-06 12 133245029 133245029 G A POLE Missense_Mutation p.P696S 0.07 tolerated(0.07) probably_damaging(0.941) TCGA-D3-A3CB-06 12 14689527 14689527 C T PLBD1 Missense_Mutation p.G226R 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 12 1943855 1943855 G A LRTM2 Missense_Mutation p.E361K 0.14 tolerated(0.06) benign(0.173) TCGA-D3-A3CB-06 12 25679737 25679737 G A IFLTD1 Missense_Mutation p.P215L 0.14 deleterious(0) probably_damaging(0.991) TCGA-D3-A3CB-06 12 307164 307164 C T SLC6A12 Nonsense_Mutation p.W284* 0.11 TCGA-D3-A3CB-06 12 369077 369077 C T SLC6A13 Missense_Mutation p.E48K 0.17 tolerated(0.28) possibly_damaging(0.803) TCGA-D3-A3CB-06 12 3757615 3757615 C T EFCAB4B Intron 0.13 TCGA-D3-A3CB-06 12 4919974 4919974 G A KCNA6 Missense_Mutation p.G256D 0.12 tolerated(0.24) benign(0.068) TCGA-D3-A3CB-06 12 50860811 50860811 C T LARP4 Missense_Mutation p.P485S 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 12 51069147 51069147 C T DIP2B Nonsense_Mutation p.Q278* 0.12 TCGA-D3-A3CB-06 12 52863467 52863467 C T KRT6C Missense_Mutation p.G471S 0.12 tolerated(0.09) probably_damaging(0.971) TCGA-D3-A3CB-06 12 53165685 53165685 T A KRT76 Silent p.L411L 0.08 TCGA-D3-A3CB-06 13 33638084 33638084 C T KL Nonsense_Mutation p.Q934* 0.14 TCGA-D3-A3CB-06 13 36229105 36229105 G A NBEA Missense_Mutation p.G2696R 0.25 deleterious(0) probably_damaging(0.953) TCGA-D3-A3CB-06 13 38248490 38248490 C T TRPC4 Missense_Mutation p.E417K 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A3CB-06 13 52676141 52676141 C T NEK5 Missense_Mutation p.E274K 0.11 tolerated(0.06) benign(0.024) TCGA-D3-A3CB-06 13 99042345 99042345 C T FARP1 Silent p.L330L 0.10 TCGA-D3-A3CB-06 14 101493169 101493169 G A MIR329-1 RNA 0.13 TCGA-D3-A3CB-06 14 102483833 102483833 C T DYNC1H1 Silent p.L2723L 0.19 TCGA-D3-A3CB-06 14 106204123 106204123 C T IGHG1 Silent p.R392R 0.20 TCGA-D3-A3CB-06 14 107078450 107078450 C T IGHV1-58 Missense_Mutation p.D92N 0.10 possibly_damaging(0.529) TCGA-D3-A3CB-06 14 20389351 20389351 G A OR4K5 Missense_Mutation p.E196K 0.11 deleterious(0.04) benign(0.314) TCGA-D3-A3CB-06 14 20483167 20483167 G A OR4K14 Silent p.F62F 0.08 TCGA-D3-A3CB-06 14 22471648 22471648 C T TRAV18 Missense_Mutation p.T24I 0.17 deleterious(0.01) possibly_damaging(0.891) TCGA-D3-A3CB-06 14 22564744 22564744 G A TRDV1 Missense_Mutation p.M65I 0.13 tolerated(0.09) possibly_damaging(0.527) TCGA-D3-A3CB-06 14 33293351 33293351 C T AKAP6 Missense_Mutation p.S2111L 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A3CB-06 14 53099010 53099010 G A GPR137C Missense_Mutation p.D284N 0.12 tolerated(0.22) possibly_damaging(0.523) TCGA-D3-A3CB-06 14 63174645 63174645 C T KCNH5 Missense_Mutation p.E850K 0.15 tolerated_low_confidence(0.73) benign(0.081) TCGA-D3-A3CB-06 14 65470996 65470996 C T CHURC1-FNTB Silent p.V93V 0.13 TCGA-D3-A3CB-06 14 66208871 66208871 C T FUT8 Missense_Mutation p.H491Y 0.21 tolerated(1) benign(0.003) TCGA-D3-A3CB-06 14 67745903 67745903 A C MPP5 Missense_Mutation p.M6L 0.12 tolerated_low_confidence(0.41) benign(0) TCGA-D3-A3CB-06 14 68196002 68196002 C T RDH12 Silent p.F251F 0.10 TCGA-D3-A3CB-06 14 73578259 73578259 C A RBM25 Missense_Mutation p.P681T 0.12 possibly_damaging(0.641) TCGA-D3-A3CB-06 14 75248353 75248353 C T YLPM1 Missense_Mutation p.P536L 0.19 unknown(0) TCGA-D3-A3CB-06 14 77746361 77746361 C T POMT2 Intron 0.08 TCGA-D3-A3CB-06 14 88652025 88652025 C T KCNK10 Missense_Mutation p.E496K 0.09 deleterious_low_confidence(0) benign(0.359) TCGA-D3-A3CB-06 14 95088730 95088730 C T SERPINA3 Silent p.L324L 0.14 TCGA-D3-A3CB-06 14 96916165 96916165 G A AK7 Silent p.G299G 0.19 TCGA-D3-A3CB-06 15 101009590 101009590 G A CERS3 Missense_Mutation p.P280S 0.13 deleterious(0) probably_damaging(0.984) TCGA-D3-A3CB-06 15 24921893 24921893 G A NPAP1 Silent p.P293P 0.22 TCGA-D3-A3CB-06 15 24921998 24921998 G A NPAP1 Silent p.R328R 0.16 TCGA-D3-A3CB-06 15 25200179 25200179 G A SNURF 5'UTR 0.15 TCGA-D3-A3CB-06 15 34118875 34118875 G A RYR3 Missense_Mutation p.E3723K 0.12 benign(0.217) TCGA-D3-A3CB-06 15 40494609 40494609 C T BUB1B Missense_Mutation p.P524L 0.15 tolerated(0.1) benign(0.282) TCGA-D3-A3CB-06 15 42743200 42743200 G A ZNF106 Missense_Mutation p.P401S 0.11 tolerated(0.24) benign(0.007) TCGA-D3-A3CB-06 15 52497304 52497304 G A MYO5C Silent p.S1526S 0.17 TCGA-D3-A3CB-06 15 64495289 64495289 G A CSNK1G1 Nonsense_Mutation p.R367* 0.25 TCGA-D3-A3CB-06 15 83932596 83932596 G A BNC1 Silent p.F469F 0.25 TCGA-D3-A3CB-06 15 94883438 94883438 G A MCTP2 Missense_Mutation p.R264Q 0.18 tolerated(0.09) probably_damaging(0.957) TCGA-D3-A3CB-06 16 19490792 19490792 C T TMC5 Missense_Mutation p.L737F 0.12 deleterious(0) probably_damaging(0.988) TCGA-D3-A3CB-06 16 20974825 20974825 G A DNAH3 Missense_Mutation p.P3461S 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A3CB-06 16 24268231 24268231 G A CACNG3 Silent p.R52R 0.14 TCGA-D3-A3CB-06 16 27777791 27777791 G A KIAA0556 Missense_Mutation p.R1324H 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 16 29883575 29883575 G A SEZ6L2 Missense_Mutation p.S879L 0.12 tolerated(0.09) benign(0.029) TCGA-D3-A3CB-06 16 48138108 48138108 G A ABCC12 Missense_Mutation p.P949S 0.11 deleterious(0) probably_damaging(0.994) TCGA-D3-A3CB-06 16 51171260 51171260 C T SALL1 Silent p.A1246A 0.11 TCGA-D3-A3CB-06 16 51172775 51172775 G A SALL1 Missense_Mutation p.P1120S 0.16 tolerated(0.15) benign(0.007) TCGA-D3-A3CB-06 16 67000146 67000146 G A CES3 Splice_Site p.X274_splice 0.12 TCGA-D3-A3CB-06 16 71571315 71571315 G A CHST4 Silent p.V245V 0.11 TCGA-D3-A3CB-06 16 81253837 81253837 G A PKD1L2 Missense_Mutation p.R47C 0.13 deleterious(0) probably_damaging(0.949) TCGA-D3-A3CB-06 16 89920709 89920709 C T SPIRE2 Missense_Mutation p.R221W 0.36 deleterious(0) possibly_damaging(0.888) TCGA-D3-A3CB-06 16 9858085 9858085 G A GRIN2A Silent p.L1106L 0.06 TCGA-D3-A3CB-06 16 9916194 9916194 G A GRIN2A Missense_Mutation p.P699S 0.11 deleterious(0.04) probably_damaging(0.981) TCGA-D3-A3CB-06 17 10247202 10247202 C A MYH13 Silent p.L603L 0.18 TCGA-D3-A3CB-06 17 10364237 10364237 C T MYH4 Silent p.T381T 0.15 TCGA-D3-A3CB-06 17 10397900 10397900 C T MYH1 Missense_Mutation p.E1853K 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3CB-06 17 16335507 16335507 G C TRPV2 Missense_Mutation p.A628P 0.11 deleterious(0.03) probably_damaging(0.928) TCGA-D3-A3CB-06 17 20805855 20805855 C T RP11-344E13.3 RNA 0.15 TCGA-D3-A3CB-06 17 20805856 20805856 C T RP11-344E13.3 RNA 0.15 TCGA-D3-A3CB-06 17 38955977 38955977 G A KRT28 Missense_Mutation p.P57S 0.14 tolerated(0.71) benign(0.004) TCGA-D3-A3CB-06 17 39535638 39535638 G A KRT34 Silent p.A323A 0.09 TCGA-D3-A3CB-06 17 39538267 39538267 C T KRT34 Missense_Mutation p.E120K 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-D3-A3CB-06 17 39538268 39538268 C T KRT34 Silent p.L119L 0.12 TCGA-D3-A3CB-06 17 39768659 39768659 G A KRT16 Silent p.F94F 0.24 TCGA-D3-A3CB-06 17 42475680 42475680 G A GPATCH8 Silent p.S1255S 0.12 TCGA-D3-A3CB-06 17 73282437 73282437 C T SLC25A19 Nonsense_Mutation p.W79* 0.13 TCGA-D3-A3CB-06 17 7978985 7978985 C T ALOX12B Missense_Mutation p.E528K 0.13 tolerated(0.08) benign(0.403) TCGA-D3-A3CB-06 17 8051324 8051324 G A PER1 Missense_Mutation p.H409Y 0.31 deleterious(0) probably_damaging(0.977) TCGA-D3-A3CB-06 18 10671551 10671551 G A PIEZO2 Silent p.I2744I 0.17 TCGA-D3-A3CB-06 18 2610828 2610828 G A NDC80 Missense_Mutation p.E587K 0.15 tolerated(0.09) benign(0.115) TCGA-D3-A3CB-06 18 34387862 34387862 G T TPGS2 Missense_Mutation p.N67K 0.11 tolerated(0.11) benign(0.16) TCGA-D3-A3CB-06 18 34387863 34387863 T C TPGS2 Missense_Mutation p.N67S 0.11 tolerated(0.31) benign(0.372) TCGA-D3-A3CB-06 18 51025755 51025755 G A DCC Missense_Mutation p.R1329K 0.12 tolerated(0.15) benign(0.439) TCGA-D3-A3CB-06 18 627154 627154 G A CLUL1 Missense_Mutation p.E161K 0.11 tolerated(0.63) benign(0.116) TCGA-D3-A3CB-06 19 11658678 11658678 G A CNN1 Missense_Mutation p.E153K 0.10 tolerated(0.08) benign(0.048) TCGA-D3-A3CB-06 19 12297721 12297721 C T ZNF136 Silent p.T176T 0.14 TCGA-D3-A3CB-06 19 13445289 13445289 C T CACNA1A Silent p.R367R 0.16 TCGA-D3-A3CB-06 19 15904951 15904951 C T OR10H5 Silent p.F31F 0.08 TCGA-D3-A3CB-06 19 16638916 16638916 G A CHERP Missense_Mutation p.P427L 0.18 tolerated_low_confidence(0.22) probably_damaging(0.991) TCGA-D3-A3CB-06 19 17951057 17951057 G A JAK3 Silent p.L412L 0.15 TCGA-D3-A3CB-06 19 30193665 30193665 T C C19orf12 Missense_Mutation p.N138S 0.20 tolerated(0.34) benign(0.02) TCGA-D3-A3CB-06 19 34900267 34900267 C T RP11-618P17.4 Missense_Mutation p.P209S 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3CB-06 19 34900268 34900268 C T RP11-618P17.4 Missense_Mutation p.P209L 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3CB-06 19 36236335 36236335 C T PSENEN 5'UTR 0.12 TCGA-D3-A3CB-06 19 38621238 38621238 T C SIPA1L3 Missense_Mutation p.V990A 0.08 deleterious(0) probably_damaging(0.979) TCGA-D3-A3CB-06 19 38951099 38951099 C T RYR1 Silent p.L815L 0.15 TCGA-D3-A3CB-06 19 39976891 39976891 C T TIMM50 Missense_Mutation p.P289L 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A3CB-06 19 40405988 40405988 G A FCGBP Nonsense_Mutation p.Q1620* 0.21 TCGA-D3-A3CB-06 19 42187773 42187773 C T CEACAM7 Missense_Mutation p.E217K 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A3CB-06 19 43349246 43349246 C T PSG10P RNA 0.11 TCGA-D3-A3CB-06 19 43430058 43430058 C T PSG7 Silent p.G370G 0.12 TCGA-D3-A3CB-06 19 44680983 44680983 T G ZNF226 Missense_Mutation p.V523G 0.19 tolerated(0.11) probably_damaging(1) TCGA-D3-A3CB-06 19 47197331 47197331 C T PRKD2 Silent p.P459P 0.15 TCGA-D3-A3CB-06 19 48918128 48918128 C T GRIN2D Missense_Mutation p.P474S 0.08 tolerated(0.89) benign(0.072) TCGA-D3-A3CB-06 19 5133943 5133943 G A KDM4B Silent p.L652L 0.11 TCGA-D3-A3CB-06 19 52147175 52147175 C T SIGLEC14 Missense_Mutation p.G290E 0.24 deleterious(0.01) benign(0.055) TCGA-D3-A3CB-06 19 53456034 53456034 A G ZNF816 Silent p.L54L 0.16 TCGA-D3-A3CB-06 19 55247649 55247649 G A KIR3DL3 3'UTR 0.17 TCGA-D3-A3CB-06 19 56382302 56382302 G A NLRP4 Missense_Mutation p.E822K 0.10 tolerated(0.4) benign(0.025) TCGA-D3-A3CB-06 19 56467445 56467445 C A NLRP8 Missense_Mutation p.S674Y 0.23 tolerated(0.06) benign(0.374) TCGA-D3-A3CB-06 19 58862937 58862937 G T A1BG Silent p.R244R 0.30 TCGA-D3-A3CB-06 19 8531250 8531250 C T HNRNPM Silent p.S254S 0.12 TCGA-D3-A3CB-06 19 9008345 9008345 C T MUC16 Silent p.R13069R 0.12 TCGA-D3-A3CB-06 19 9068151 9068151 G A MUC16 Missense_Mutation p.S6432F 0.11 unknown(0) TCGA-D3-A3CB-06 19 9072414 9072414 G A MUC16 Missense_Mutation p.S5011L 0.11 unknown(0) TCGA-D3-A3CB-06 1 117561029 117561029 C T CD101 Missense_Mutation p.R622C 0.19 tolerated(0.19) benign(0.022) TCGA-D3-A3CB-06 1 12353695 12353695 C T VPS13D Silent p.F1989F 0.21 TCGA-D3-A3CB-06 1 150939673 150939673 G A CERS2 Silent p.F206F 0.24 TCGA-D3-A3CB-06 1 152323959 152323959 C T FLG2 Silent p.R2101R 0.27 TCGA-D3-A3CB-06 1 155582230 155582230 C T MSTO1 Missense_Mutation p.R279C 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A3CB-06 1 158908307 158908307 G A PYHIN1 Missense_Mutation p.G129E 0.14 tolerated(0.22) possibly_damaging(0.724) TCGA-D3-A3CB-06 1 159863029 159863029 G A CCDC19 Missense_Mutation p.R24C 0.12 deleterious(0) benign(0.04) TCGA-D3-A3CB-06 1 17331977 17331977 G A ATP13A2 Silent p.I60I 0.46 TCGA-D3-A3CB-06 1 176857294 176857294 C T ASTN1 Missense_Mutation p.G996E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 1 186088406 186088406 C T HMCN1 Nonsense_Mutation p.R3978* 0.30 TCGA-D3-A3CB-06 1 197019935 197019935 C T F13B Missense_Mutation p.E544K 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A3CB-06 1 202403814 202403814 C T PPP1R12B Missense_Mutation p.S391F 0.22 deleterious(0.01) possibly_damaging(0.804) TCGA-D3-A3CB-06 1 203037611 203037611 T C PPFIA4 Missense_Mutation p.V554A 0.10 deleterious(0.04) benign(0.297) TCGA-D3-A3CB-06 1 210273574 210273574 G A SYT14 Missense_Mutation p.R356K 0.21 tolerated(0.17) possibly_damaging(0.747) TCGA-D3-A3CB-06 1 223286174 223286174 G A TLR5 Missense_Mutation p.P67L 0.16 deleterious(0.04) probably_damaging(0.911) TCGA-D3-A3CB-06 1 2267927 2267927 C T MORN1 Missense_Mutation p.E411K 0.30 tolerated(0.26) benign(0.108) TCGA-D3-A3CB-06 1 227239679 227239679 G A CDC42BPA Intron 0.28 TCGA-D3-A3CB-06 1 248367019 248367019 C T OR2M3 Missense_Mutation p.S217F 0.20 deleterious(0.01) probably_damaging(1) TCGA-D3-A3CB-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.13 TCGA-D3-A3CB-06 1 34158608 34158608 G A CSMD2 Missense_Mutation p.S1285L 0.15 deleterious(0) probably_damaging(0.992) TCGA-D3-A3CB-06 1 34254299 34254299 G A CSMD2 Missense_Mutation p.S482L 0.30 tolerated(0.24) benign(0.426) TCGA-D3-A3CB-06 1 38301340 38301340 C T MTF1 Intron 0.16 TCGA-D3-A3CB-06 1 43663253 43663253 G A WDR65 Missense_Mutation p.M384I 0.25 tolerated(0.39) benign(0.016) TCGA-D3-A3CB-06 1 43663254 43663254 T A WDR65 Missense_Mutation p.Y385N 0.26 tolerated(0.3) benign(0.062) TCGA-D3-A3CB-06 1 47398371 47398371 C T CYP4A11 Intron 0.28 TCGA-D3-A3CB-06 1 47505115 47505115 C T CYP4X1 Silent p.I328I 0.33 TCGA-D3-A3CB-06 1 53122470 53122470 G A FAM159A Missense_Mutation p.E111K 0.23 tolerated(0.06) benign(0.23) TCGA-D3-A3CB-06 1 54661315 54661315 G A CYB5RL 5'UTR 0.34 TCGA-D3-A3CB-06 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.14 TCGA-D3-A3CB-06 1 87102514 87102514 C T RP4-651E10.4 Intron 0.16 TCGA-D3-A3CB-06 20 14306599 14306599 C T FLRT3 Silent p.E518E 0.28 TCGA-D3-A3CB-06 20 14307372 14307372 G A FLRT3 Missense_Mutation p.R261W 0.10 deleterious(0.01) possibly_damaging(0.788) TCGA-D3-A3CB-06 20 35060335 35060335 C T DLGAP4 Missense_Mutation p.P72L 0.23 deleterious(0) probably_damaging(0.973) TCGA-D3-A3CB-06 20 40727189 40727189 G A PTPRT Missense_Mutation p.H1240Y 0.14 tolerated(1) probably_damaging(0.992) TCGA-D3-A3CB-06 20 5904399 5904399 G A CHGB Missense_Mutation p.E537K 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 20 61981800 61981800 G A CHRNA4 Silent p.I321I 0.26 TCGA-D3-A3CB-06 20 62168598 62168598 C T PTK6 Missense_Mutation p.D24N 0.40 tolerated(0.32) benign(0.012) TCGA-D3-A3CB-06 20 62591216 62591216 G A ZNF512B 3'UTR 0.26 TCGA-D3-A3CB-06 20 62591217 62591217 G A ZNF512B 3'UTR 0.25 TCGA-D3-A3CB-06 20 9624791 9624791 G A PAK7 Silent p.I62I 0.23 TCGA-D3-A3CB-06 21 35743057 35743057 G A KCNE2 Missense_Mutation p.E94K 0.22 tolerated(0.49) benign(0.019) TCGA-D3-A3CB-06 21 39087307 39087307 C T KCNJ6 Silent p.R51R 0.10 TCGA-D3-A3CB-06 21 45987855 45987855 G A TSPEAR Silent p.V39V 0.22 TCGA-D3-A3CB-06 22 23476223 23476223 C T RTDR1 Silent p.Q137Q 0.13 TCGA-D3-A3CB-06 22 26743773 26743773 C A SEZ6L Silent p.A767A 0.11 TCGA-D3-A3CB-06 22 30886157 30886157 G A SEC14L4 Silent p.P386P 0.20 TCGA-D3-A3CB-06 22 34046528 34046528 G A LARGE Missense_Mutation p.A78V 0.22 tolerated_low_confidence(1) benign(0.034) TCGA-D3-A3CB-06 2 121107048 121107048 C T INHBB Silent p.P274P 0.14 TCGA-D3-A3CB-06 2 136570134 136570134 G A LCT Silent p.I700I 0.19 TCGA-D3-A3CB-06 2 137990496 137990496 C T THSD7B Missense_Mutation p.A648V 0.23 deleterious(0.02) possibly_damaging(0.607) TCGA-D3-A3CB-06 2 137990559 137990559 C T THSD7B Missense_Mutation p.P669L 0.11 deleterious(0.01) benign(0.018) TCGA-D3-A3CB-06 2 139326535 139326535 G T SPOPL Missense_Mutation p.G355V 0.11 deleterious(0) probably_damaging(0.997) TCGA-D3-A3CB-06 2 155295135 155295135 G A GALNT13 Missense_Mutation p.R476Q 0.15 tolerated(0.06) possibly_damaging(0.904) TCGA-D3-A3CB-06 2 167133823 167133823 G A SCN9A Silent p.S837S 0.15 TCGA-D3-A3CB-06 2 168105894 168105894 G A XIRP2 Silent p.R2664R 0.15 TCGA-D3-A3CB-06 2 179449972 179449972 C T TTN Nonsense_Mutation p.W21500* 0.11 TCGA-D3-A3CB-06 2 179613945 179613945 T G TTN Intron 0.12 TCGA-D3-A3CB-06 2 179702336 179702336 C T CCDC141 Missense_Mutation p.E1204K 0.17 deleterious(0.02) possibly_damaging(0.627) TCGA-D3-A3CB-06 2 180810261 180810261 A G CWC22 Silent p.G774G 0.17 TCGA-D3-A3CB-06 2 186670793 186670793 C T FSIP2 Missense_Mutation p.S5676L 0.11 benign(0.001) TCGA-D3-A3CB-06 2 190532015 190532015 C T ASNSD1 Missense_Mutation p.S386F 0.19 tolerated(0.4) possibly_damaging(0.756) TCGA-D3-A3CB-06 2 196753050 196753050 C T DNAH7 Missense_Mutation p.E1780K 0.24 tolerated(0.2) benign(0.005) TCGA-D3-A3CB-06 2 206630209 206630209 G A NRP2 Silent p.E773E 0.08 TCGA-D3-A3CB-06 2 220167204 220167204 G A PTPRN Missense_Mutation p.R217C 0.16 deleterious(0) possibly_damaging(0.836) TCGA-D3-A3CB-06 2 228137772 228137772 A C COL4A3 Silent p.G622G 0.09 TCGA-D3-A3CB-06 2 241727552 241727552 G A KIF1A Silent p.I93I 0.45 TCGA-D3-A3CB-06 2 242072321 242072321 G A PASK Silent p.L477L 0.18 TCGA-D3-A3CB-06 2 27446824 27446824 T G CAD Missense_Mutation p.D345E 0.16 deleterious(0) probably_damaging(0.989) TCGA-D3-A3CB-06 2 27481679 27481679 C T SLC30A3 Silent p.R73R 0.17 TCGA-D3-A3CB-06 2 31565072 31565072 C T XDH Missense_Mutation p.D1166N 0.15 deleterious(0.03) probably_damaging(1) TCGA-D3-A3CB-06 2 40397470 40397470 C T SLC8A1 Silent p.K663K 0.11 TCGA-D3-A3CB-06 2 49381435 49381435 G A FSHR Missense_Mutation p.P41L 0.20 tolerated(0.06) benign(0.19) TCGA-D3-A3CB-06 2 75929383 75929383 C G GCFC2 Missense_Mutation p.K187N 0.12 tolerated(0.19) benign(0.004) TCGA-D3-A3CB-06 2 85770071 85770071 C T MAT2A Silent p.F333F 0.15 TCGA-D3-A3CB-06 2 97464925 97464925 C T CNNM4 Nonsense_Mutation p.R605* 0.10 TCGA-D3-A3CB-06 3 128697005 128697005 G A KIAA1257 Nonsense_Mutation p.Q231* 0.19 TCGA-D3-A3CB-06 3 158523191 158523191 C T MFSD1 Missense_Mutation p.A135V 0.19 deleterious(0) possibly_damaging(0.738) TCGA-D3-A3CB-06 3 187419988 187419988 G A RTP2 5'UTR 0.24 TCGA-D3-A3CB-06 3 194081662 194081662 C T LRRC15 Silent p.V43V 0.25 TCGA-D3-A3CB-06 3 28382035 28382035 G A AZI2 Missense_Mutation p.P25L 0.27 deleterious(0.03) benign(0.167) TCGA-D3-A3CB-06 3 38938441 38938441 G A SCN11A Silent p.C766C 0.22 TCGA-D3-A3CB-06 3 42264731 42264731 G A TRAK1 Silent p.Q788Q 0.13 TCGA-D3-A3CB-06 3 44879877 44879877 C T KIF15 Silent p.T1094T 0.19 TCGA-D3-A3CB-06 3 48629399 48629399 G A COL7A1 Missense_Mutation p.S430F 0.20 unknown(0) TCGA-D3-A3CB-06 3 48691120 48691120 G A CELSR3 Missense_Mutation p.R1794W 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 3 97439220 97439220 G A EPHA6 Missense_Mutation p.G967E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 3 97983956 97983956 G A OR5H6 Silent p.L276L 0.21 TCGA-D3-A3CB-06 4 100543903 100543903 C T MTTP Silent p.S861S 0.10 TCGA-D3-A3CB-06 4 126370478 126370478 T G FAT4 Missense_Mutation p.N2769K 0.12 probably_damaging(0.998) TCGA-D3-A3CB-06 4 144468576 144468576 G A SMARCA5 Missense_Mutation p.E898K 0.16 deleterious(0.01) benign(0.136) TCGA-D3-A3CB-06 4 151504946 151504946 G A MAB21L2 Silent p.K255K 0.28 TCGA-D3-A3CB-06 4 153896921 153896921 C T FHDC1 Silent p.S826S 0.19 TCGA-D3-A3CB-06 4 25780745 25780745 G A SEL1L3 Silent p.I846I 0.13 TCGA-D3-A3CB-06 4 36163141 36163141 G A ARAP2 Silent p.S735S 0.13 TCGA-D3-A3CB-06 4 41664900 41664900 C T LIMCH1 Missense_Mutation p.P679S 0.14 tolerated(0.54) benign(0.001) TCGA-D3-A3CB-06 4 55152108 55152108 C T PDGFRA Missense_Mutation p.S847L 0.10 deleterious(0) probably_damaging(0.966) TCGA-D3-A3CB-06 4 71500038 71500038 G A ENAM Missense_Mutation p.G75E 0.12 deleterious(0) possibly_damaging(0.808) TCGA-D3-A3CB-06 4 75971482 75971482 G A PARM1 3'UTR 0.31 TCGA-D3-A3CB-06 4 77003022 77003022 G A ART3 Missense_Mutation p.E39K 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A3CB-06 4 8218686 8218686 C T SH3TC1 Missense_Mutation p.P211S 0.17 tolerated(0.96) benign(0.084) TCGA-D3-A3CB-06 5 13841135 13841135 G A DNAH5 Silent p.F1863F 0.15 TCGA-D3-A3CB-06 5 140214183 140214183 G A PCDHA7 Missense_Mutation p.G72E 0.29 tolerated_low_confidence(0.06) benign(0.37) TCGA-D3-A3CB-06 5 140221176 140221176 C T PCDHA8 Silent p.I90I 0.26 TCGA-D3-A3CB-06 5 140573298 140573298 C T PCDHB10 Silent p.F391F 0.14 TCGA-D3-A3CB-06 5 176011785 176011785 G A CDHR2 Missense_Mutation p.D835N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 5 178309887 178309887 C T ZNF354B Missense_Mutation p.S145L 0.18 tolerated(0.48) benign(0.003) TCGA-D3-A3CB-06 5 19473773 19473773 G A CDH18 Silent p.I645I 0.23 TCGA-D3-A3CB-06 5 26881418 26881418 C T CDH9 Missense_Mutation p.D733N 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A3CB-06 5 54404140 54404140 G A GZMA Missense_Mutation p.R182Q 0.27 tolerated(0.71) benign(0) TCGA-D3-A3CB-06 5 66427663 66427663 G A MAST4 Missense_Mutation p.M659I 0.23 benign(0.29) TCGA-D3-A3CB-06 6 100838556 100838556 G A SIM1 Missense_Mutation p.P661L 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3CB-06 6 127608556 127608558 AGA - RNF146 In_Frame_Del p.E268del 0.20 TCGA-D3-A3CB-06 6 132966284 132966284 C T TAAR1 Missense_Mutation p.D287N 0.11 tolerated(0.25) benign(0.363) TCGA-D3-A3CB-06 6 152644639 152644639 G A SYNE1 Silent p.I5297I 0.20 TCGA-D3-A3CB-06 6 160662507 160662507 G A SLC22A2 Silent p.F500F 0.10 TCGA-D3-A3CB-06 6 30137018 30137018 G A TRIM15 Missense_Mutation p.D237N 0.22 deleterious(0.03) benign(0.062) TCGA-D3-A3CB-06 6 32008250 32008250 C T CYP21A2 Missense_Mutation p.P336L 0.13 tolerated(0.37) benign(0.006) TCGA-D3-A3CB-06 6 32260712 32260712 G A C6orf10 3'UTR 0.20 TCGA-D3-A3CB-06 6 32339555 32339555 G A C6orf10 5'UTR 0.26 TCGA-D3-A3CB-06 6 41117514 41117514 C T TREML1 Missense_Mutation p.G255E 0.15 tolerated(0.14) benign(0.025) TCGA-D3-A3CB-06 6 42891008 42891008 C T PTCRA Missense_Mutation p.S101F 0.16 tolerated(0.05) benign(0.011) TCGA-D3-A3CB-06 6 55266587 55266587 G A GFRAL Splice_Site p.X374_splice 0.16 TCGA-D3-A3CB-06 6 73879504 73879504 G A KCNQ5 Missense_Mutation p.E521K 0.13 deleterious(0.05) benign(0.41) TCGA-D3-A3CB-06 7 100681536 100681536 C T MUC17 Missense_Mutation p.P2280L 0.30 unknown(0) TCGA-D3-A3CB-06 7 103053510 103053510 G A SLC26A5 Silent p.Y114Y 0.11 TCGA-D3-A3CB-06 7 107393930 107393930 C T CBLL1 Missense_Mutation p.P86S 0.35 tolerated(0.14) benign(0.015) TCGA-D3-A3CB-06 7 117242877 117242877 C T CFTR Intron 0.34 TCGA-D3-A3CB-06 7 126086222 126086222 C T GRM8 Missense_Mutation p.G879S 0.23 deleterious(0.03) benign(0.382) TCGA-D3-A3CB-06 7 128494537 128494537 C T FLNC Silent p.I2266I 0.29 TCGA-D3-A3CB-06 7 140374464 140374464 G A ADCK2 Silent p.K329K 0.30 TCGA-D3-A3CB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-D3-A3CB-06 7 142459860 142459860 A T PRSS1 Missense_Mutation p.N146Y 0.11 deleterious(0.02) probably_damaging(0.919) TCGA-D3-A3CB-06 7 142612069 142612069 G A TRPV5 Silent p.F478F 0.38 TCGA-D3-A3CB-06 7 149530948 149530948 C T ZNF862 5'Flank 0.37 TCGA-D3-A3CB-06 7 44189389 44189389 C T GCK Missense_Mutation p.D218N 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A3CB-06 7 65154345 65154345 G A INTS4L2 RNA 0.18 TCGA-D3-A3CB-06 7 66264330 66264330 C T KCTD7 Missense_Mutation p.P250L 0.08 tolerated(0.54) benign(0.042) TCGA-D3-A3CB-06 7 72755321 72755321 G A FKBP6 Missense_Mutation p.R278Q 0.07 deleterious(0.05) benign(0.01) TCGA-D3-A3CB-06 7 80302686 80302686 G A CD36 Silent p.L405L 0.08 TCGA-D3-A3CB-06 7 98254310 98254310 C T NPTX2 Silent p.I240I 0.25 TCGA-D3-A3CB-06 8 101153270 101153270 G A FBXO43 Silent p.H404H 0.13 TCGA-D3-A3CB-06 8 11995065 11995065 C G USP17L2 Missense_Mutation p.R402P 0.08 tolerated(0.27) benign(0.001) TCGA-D3-A3CB-06 8 139144717 139144717 C T FAM135B 3'UTR 0.48 TCGA-D3-A3CB-06 8 145537689 145537689 C A HSF1 Silent p.P452P 0.11 TCGA-D3-A3CB-06 8 1639759 1639759 C T DLGAP2 Silent p.F841F 0.22 TCGA-D3-A3CB-06 8 22066984 22066984 G A BMP1 Missense_Mutation p.V868M 0.14 tolerated(0.11) benign(0.148) TCGA-D3-A3CB-06 8 67062108 67062108 C T TRIM55 Silent p.L278L 0.20 TCGA-D3-A3CB-06 8 67900707 67900707 C T PPP1R42 Missense_Mutation p.D200N 0.21 tolerated(0.08) benign(0.059) TCGA-D3-A3CB-06 8 70585448 70585448 G A SLCO5A1 Missense_Mutation p.R735C 0.34 deleterious(0) probably_damaging(0.995) TCGA-D3-A3CB-06 9 105767288 105767288 G A CYLC2 Silent p.K125K 0.18 TCGA-D3-A3CB-06 9 107289152 107289152 G A OR13C4 Silent p.F113F 0.09 TCGA-D3-A3CB-06 9 107298289 107298289 G A OR13C3 Missense_Mutation p.S269F 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 9 119106879 119106879 T G PAPPA Silent p.A1223A 0.13 TCGA-D3-A3CB-06 9 121929768 121929768 G A BRINP1 Missense_Mutation p.T627I 0.15 tolerated(0.12) benign(0.016) TCGA-D3-A3CB-06 9 125330591 125330591 G A OR1L8 Missense_Mutation p.L56F 0.07 deleterious(0.02) possibly_damaging(0.452) TCGA-D3-A3CB-06 9 125437530 125437530 G A OR1L3 Missense_Mutation p.G41E 0.16 deleterious(0) probably_damaging(0.991) TCGA-D3-A3CB-06 9 125563032 125563032 C T OR1K1 Missense_Mutation p.P211S 0.11 deleterious(0.01) possibly_damaging(0.877) TCGA-D3-A3CB-06 9 126520023 126520023 G A DENND1A Silent p.C87C 0.12 TCGA-D3-A3CB-06 9 133495798 133495798 G A FUBP3 Missense_Mutation p.G242S 0.15 tolerated(0.29) benign(0.004) TCGA-D3-A3CB-06 9 21305122 21305122 C T IFNA5 Missense_Mutation p.G45E 0.16 deleterious(0.05) benign(0.005) TCGA-D3-A3CB-06 9 21971096 21971096 C T CDKN2A Missense_Mutation p.E88K 0.13 deleterious(0.04) probably_damaging(0.918) TCGA-D3-A3CB-06 9 21971097 21971097 C T CDKN2A Silent p.R87R 0.13 TCGA-D3-A3CB-06 9 38395820 38395820 C T ALDH1B1 Silent p.L25L 0.17 TCGA-D3-A3CB-06 9 5185451 5185451 C T INSL6 Missense_Mutation p.S51N 0.09 deleterious(0.04) possibly_damaging(0.787) TCGA-D3-A3CB-06 9 79465507 79465507 C T PRUNE2 Silent p.T72T 0.10 TCGA-D3-A3CB-06 9 93375794 93375794 C T DIRAS2 Missense_Mutation p.E106K 0.09 tolerated(0.43) benign(0.056) TCGA-D3-A3CB-06 9 95077144 95077144 G A NOL8 Missense_Mutation p.S588F 0.14 tolerated(0.11) benign(0.079) TCGA-D3-A3CB-06 X 115577962 115577962 G A SLC6A14 Missense_Mutation p.R282Q 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3CB-06 X 135428902 135428902 C T GPR112 Missense_Mutation p.H1013Y 0.35 tolerated(0.08) benign(0.007) TCGA-D3-A3CB-06 X 137785196 137785196 G A FGF13 Nonsense_Mutation p.Q128* 0.36 TCGA-D3-A3CB-06 X 37670055 37670055 G A CYBB Missense_Mutation p.G533E 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A3CB-06 X 69502086 69502086 G A RAB41 Missense_Mutation p.D7N 0.25 tolerated_low_confidence(0.71) benign(0) TCGA-D3-A3CB-06 X 78216281 78216281 C T P2RY10 Silent p.P88P 0.34 TCGA-D3-A3CB-06 Y 2654987 2654987 G A SRY 3'UTR 0.33 TCGA-D3-A3CC-06 11 35222633 35222634 - ACCAC CD44 Frame_Shift_Ins p.R313Hfs*34 0.11 TCGA-D3-A3CC-06 11 65265689 65265689 A T MALAT1 RNA 0.29 TCGA-D3-A3CC-06 11 72293497 72293497 G C PDE2A Missense_Mutation p.D614E 0.19 tolerated(0.32) benign(0.001) TCGA-D3-A3CC-06 12 14947999 14947999 C T WBP11 Missense_Mutation p.D143N 0.08 deleterious(0.02) unknown(0) TCGA-D3-A3CC-06 12 58022613 58022613 G C B4GALNT1 Silent p.L295L 0.15 TCGA-D3-A3CC-06 13 102378959 102378959 C G FGF14 Intron 0.14 TCGA-D3-A3CC-06 14 71572021 71572021 G T PCNX Silent p.G2055G 0.57 TCGA-D3-A3CC-06 17 39092616 39092616 G A KRT23 Silent p.N80N 0.41 TCGA-D3-A3CC-06 17 39191032 39191032 G A KRTAP1-3 Silent p.C14C 0.20 TCGA-D3-A3CC-06 17 76498698 76498698 G A DNAH17 Missense_Mutation p.A1711V 0.37 benign(0.387) TCGA-D3-A3CC-06 18 56202520 56202520 C T ALPK2 Silent p.E1633E 0.39 TCGA-D3-A3CC-06 19 10226237 10226237 G A EIF3G Missense_Mutation p.R289C 0.20 tolerated(0.21) benign(0.035) TCGA-D3-A3CC-06 19 41003437 41003437 C T SPTBN4 Missense_Mutation p.A237V 0.16 deleterious(0) benign(0) TCGA-D3-A3CC-06 19 42793213 42793213 G A CIC Missense_Mutation p.D369N 0.18 benign(0.243) TCGA-D3-A3CC-06 19 44419091 44419091 C T ZNF45 Missense_Mutation p.G166E 0.26 tolerated(0.31) benign(0.004) TCGA-D3-A3CC-06 19 44419092 44419092 C A ZNF45 Nonsense_Mutation p.G166* 0.25 TCGA-D3-A3CC-06 19 44423036 44423036 C G ZNF45 Missense_Mutation p.R74T 0.24 tolerated(0.06) benign(0.007) TCGA-D3-A3CC-06 19 50496177 50496177 C G VRK3 Missense_Mutation p.E301D 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A3CC-06 19 50498123 50498123 C T VRK3 Missense_Mutation p.S273N 0.37 tolerated(1) benign(0.001) TCGA-D3-A3CC-06 19 51499264 51499264 G A KLK8 3'UTR 0.25 TCGA-D3-A3CC-06 19 51499342 51499342 G C KLK8 Missense_Mutation p.I297M 0.19 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A3CC-06 19 51499375 51499375 G C KLK8 Silent p.V286V 0.22 TCGA-D3-A3CC-06 19 51499431 51499431 G A KLK8 Nonsense_Mutation p.Q268* 0.20 TCGA-D3-A3CC-06 1 152325088 152325088 C T FLG2 Missense_Mutation p.G1725E 0.26 probably_damaging(0.931) TCGA-D3-A3CC-06 1 28233446 28233446 T C RPA2 Missense_Mutation p.D109G 0.13 tolerated(0.28) probably_damaging(0.987) TCGA-D3-A3CC-06 21 34037380 34037380 C A SYNJ1 Missense_Mutation p.G755V 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3CC-06 21 41455872 41455872 A C DSCAM Silent p.S1398S 0.21 TCGA-D3-A3CC-06 22 50869699 50869699 C A PPP6R2 Missense_Mutation p.T409K 0.14 tolerated(0.07) benign(0.098) TCGA-D3-A3CC-06 3 137783520 137783521 - A DZIP1L Frame_Shift_Ins p.M698Yfs*20 0.21 TCGA-D3-A3CC-06 3 50379244 50379244 C G ZMYND10 Missense_Mutation p.R373P 0.27 tolerated(0.06) benign(0.136) TCGA-D3-A3CC-06 3 57132135 57132135 G T IL17RD Missense_Mutation p.N532K 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A3CC-06 3 93781971 93781971 A G NSUN3 Translation_Start_Site p.M1? 0.42 tolerated_low_confidence(0.28) benign(0) TCGA-D3-A3CC-06 4 126239466 126239466 C G FAT4 Missense_Mutation p.L634V 0.27 probably_damaging(0.999) TCGA-D3-A3CC-06 4 126412858 126412858 G A FAT4 Missense_Mutation p.E4961K 0.35 benign(0.001) TCGA-D3-A3CC-06 4 148944547 148944547 G A ARHGAP10 Missense_Mutation p.C617Y 0.29 tolerated(0.3) benign(0.305) TCGA-D3-A3CC-06 5 149900988 149900988 G T NDST1 Missense_Mutation p.D58Y 0.21 deleterious_low_confidence(0.01) benign(0.225) TCGA-D3-A3CC-06 6 36446928 36446928 C A KCTD20 Missense_Mutation p.F155L 0.34 tolerated(0.25) possibly_damaging(0.874) TCGA-D3-A3CC-06 6 44218202 44218202 A G HSP90AB1 Missense_Mutation p.K275E 0.19 tolerated(0.37) possibly_damaging(0.649) TCGA-D3-A3CC-06 7 5270477 5270477 G C WIPI2 Missense_Mutation p.D422H 0.22 deleterious(0) benign(0.006) TCGA-D3-A3CC-06 7 81346642 81346642 C G HGF Missense_Mutation p.E437D 0.22 tolerated(0.07) benign(0.008) TCGA-D3-A3CC-06 X 73062205 73062205 A T XIST RNA 0.38 TCGA-D3-A3CE-06 10 38120724 38120724 T C ZNF248 Missense_Mutation p.Y520C 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A3CE-06 10 69785421 69785421 A G HERC4 Missense_Mutation p.F264L 0.51 deleterious(0.05) probably_damaging(0.914) TCGA-D3-A3CE-06 11 770827 770827 C A PDDC1 3'UTR 0.11 TCGA-D3-A3CE-06 11 94225870 94225870 G C MRE11A Intron 0.53 TCGA-D3-A3CE-06 12 11214123 11214123 G C TAS2R46 Missense_Mutation p.N257K 0.14 tolerated(0.18) benign(0.019) TCGA-D3-A3CE-06 12 113515257 113515257 C T DTX1 Silent p.F96F 0.18 TCGA-D3-A3CE-06 12 123001841 123001841 G A RSRC2 Missense_Mutation p.R179C 0.58 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A3CE-06 12 65564456 65564456 C T LEMD3 Silent p.N360N 0.16 TCGA-D3-A3CE-06 12 75444669 75444669 T A KCNC2 Silent p.G372G 0.17 TCGA-D3-A3CE-06 13 84453583 84453583 T C SLITRK1 Missense_Mutation p.Y687C 0.25 deleterious(0) possibly_damaging(0.513) TCGA-D3-A3CE-06 16 70732696 70732697 - GCATTCAGCAGGATGTCTGCCATTGAGTGGAAGATGTTCTCA VAC14 In_Frame_Ins p.L560_N561insENIFHSMADILLNA 0.08 TCGA-D3-A3CE-06 17 16347246 16347246 G A FAM211A Missense_Mutation p.R231C 0.18 tolerated(0.08) probably_damaging(0.953) TCGA-D3-A3CE-06 17 71231869 71231869 T G C17orf80 Missense_Mutation p.V83G 0.24 tolerated(0.45) benign(0.077) TCGA-D3-A3CE-06 18 64197127 64197128 - G CDH19 Frame_Shift_Ins p.Q472Sfs*4 0.24 TCGA-D3-A3CE-06 19 49362784 49362784 G A PLEKHA4 Missense_Mutation p.P212S 0.28 tolerated(0.19) benign(0.063) TCGA-D3-A3CE-06 19 50455562 50455562 C T SIGLEC11 Missense_Mutation p.V581I 0.41 tolerated(0.99) benign(0.001) TCGA-D3-A3CE-06 1 218458675 218458675 C G RRP15 Missense_Mutation p.P6R 0.49 tolerated_low_confidence(0.63) benign(0.001) TCGA-D3-A3CE-06 1 97278427 97278427 C T PTBP2 Missense_Mutation p.S444F 0.24 deleterious(0.02) possibly_damaging(0.747) TCGA-D3-A3CE-06 20 30667629 30667629 C - HCK Frame_Shift_Del p.G162Afs*8 0.10 TCGA-D3-A3CE-06 21 45706946 45706946 G A AIRE Silent p.K131K 0.21 TCGA-D3-A3CE-06 22 17688079 17688079 C T CECR1 Missense_Mutation p.G142R 0.74 tolerated(0.14) benign(0.012) TCGA-D3-A3CE-06 22 26894937 26894937 C G TFIP11 Missense_Mutation p.C445S 0.21 tolerated(0.57) benign(0.002) TCGA-D3-A3CE-06 22 41973231 41973231 G A PMM1 3'UTR 0.79 TCGA-D3-A3CE-06 2 113514717 113514717 T G CKAP2L Missense_Mutation p.K77N 0.20 tolerated(0.05) possibly_damaging(0.842) TCGA-D3-A3CE-06 2 132238267 132238267 C T TUBA3D Missense_Mutation p.T334I 0.20 deleterious_low_confidence(0.04) benign(0.374) TCGA-D3-A3CE-06 2 241631380 241631380 T A AQP12A Missense_Mutation p.L17H 0.15 deleterious(0.01) probably_damaging(0.91) TCGA-D3-A3CE-06 2 44021765 44021765 A G DYNC2LI1 Missense_Mutation p.M164V 0.27 tolerated(0.38) benign(0.001) TCGA-D3-A3CE-06 4 176561960 176561960 C T GPM6A Missense_Mutation p.E188K 0.29 tolerated(0.1) benign(0.002) TCGA-D3-A3CE-06 5 140502272 140502272 T A PCDHB4 Missense_Mutation p.I231N 0.19 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D3-A3CE-06 6 31847822 31847822 G C EHMT2 3'UTR 0.18 TCGA-D3-A3CE-06 6 50712873 50712873 C T TFAP2D Missense_Mutation p.P313S 0.47 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A3CE-06 7 107823349 107823349 C T NRCAM Missense_Mutation p.E774K 0.11 deleterious(0) benign(0.415) TCGA-D3-A3CE-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.88 deleterious(0) probably_damaging(0.967) TCGA-D3-A3CE-06 7 66104168 66104168 C T KCTD7 Silent p.N273N 0.26 TCGA-D3-A3CE-06 8 53084780 53084780 T C ST18 Missense_Mutation p.K214R 0.12 tolerated(0.09) benign(0.003) TCGA-D3-A3CE-06 9 138670652 138670652 G A KCNT1 Missense_Mutation p.V905M 0.50 deleterious(0) probably_damaging(0.968) TCGA-D3-A3CE-06 9 20820362 20820362 G A FOCAD Missense_Mutation p.G534R 0.68 deleterious(0) probably_damaging(0.968) TCGA-D3-A3CE-06 9 20820363 20820363 G A FOCAD Missense_Mutation p.G534E 0.67 deleterious(0) probably_damaging(0.995) TCGA-D3-A3CE-06 9 94486904 94486904 G A ROR2 Silent p.Y624Y 0.18 TCGA-D3-A3CE-06 X 101857274 101857274 G A ARMCX5 Missense_Mutation p.E69K 0.21 deleterious(0) benign(0.174) TCGA-D3-A3CE-06 X 117752567 117752567 T C DOCK11 Missense_Mutation p.V1116A 0.33 tolerated(0.14) benign(0.398) TCGA-D3-A3CE-06 X 122551412 122551412 G A GRIA3 Missense_Mutation p.E554K 0.38 tolerated(0.07) benign(0.241) TCGA-D3-A3CE-06 X 140271057 140271063 CGGGCAG - LDOC1 Frame_Shift_Del p.S48Rfs*28 0.42 TCGA-D3-A3CE-06 X 30254167 30254167 C T MAGEB3 Silent p.S42S 0.58 TCGA-D3-A3CF-06 10 68940148 68940148 C T CTNNA3 Missense_Mutation p.R325Q 0.23 deleterious(0.01) possibly_damaging(0.553) TCGA-D3-A3CF-06 10 91066107 91066107 A G IFIT2 Missense_Mutation p.R132G 0.21 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A3CF-06 11 105880673 105880673 T C MSANTD4 Silent p.K209K 0.22 TCGA-D3-A3CF-06 12 18847887 18847887 G T PLCZ1 Missense_Mutation p.P473Q 0.09 deleterious(0) probably_damaging(0.98) TCGA-D3-A3CF-06 12 19522626 19522626 G C PLEKHA5 Splice_Site p.X1252_splice 0.26 TCGA-D3-A3CF-06 13 35619181 35619181 C G NBEA Missense_Mutation p.I208M 0.44 tolerated(0.07) benign(0.142) TCGA-D3-A3CF-06 16 29937262 29937262 G A KCTD13 Silent p.Y31Y 0.14 TCGA-D3-A3CF-06 16 88713222 88713222 C A CYBA Silent p.V76V 0.27 TCGA-D3-A3CF-06 16 89806363 89806363 C T ZNF276 3'Flank 0.15 TCGA-D3-A3CF-06 17 39334125 39334125 G C KRTAP4-2 Missense_Mutation p.P98A 0.08 deleterious(0) unknown(0) TCGA-D3-A3CF-06 17 52981124 52981124 C T TOM1L1 Silent p.I38I 0.12 TCGA-D3-A3CF-06 19 10790580 10790580 T A ILF3 Missense_Mutation p.L279Q 0.17 deleterious(0) possibly_damaging(0.844) TCGA-D3-A3CF-06 19 22940600 22940600 G T ZNF99 Missense_Mutation p.P704H 0.14 deleterious(0.01) benign(0.413) TCGA-D3-A3CF-06 19 22941562 22941562 G A ZNF99 Silent p.A383A 0.10 TCGA-D3-A3CF-06 19 35616221 35616221 G A LGI4 Missense_Mutation p.P497L 0.11 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-D3-A3CF-06 19 45165123 45165123 C T PVR 3'UTR 0.20 TCGA-D3-A3CF-06 19 9080450 9080450 C T MUC16 Splice_Site p.X3194_splice 0.14 TCGA-D3-A3CF-06 1 119925606 119925606 A T HAO2 Missense_Mutation p.E67V 0.17 tolerated(0.48) benign(0.315) TCGA-D3-A3CF-06 1 12025608 12025608 C T PLOD1 Silent p.T514T 0.16 TCGA-D3-A3CF-06 1 155450458 155450458 C G ASH1L Missense_Mutation p.E735Q 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-D3-A3CF-06 1 1961584 1961584 C T GABRD Missense_Mutation p.R408C 0.12 tolerated(0.08) possibly_damaging(0.564) TCGA-D3-A3CF-06 1 197091378 197091378 G C ASPM Missense_Mutation p.H1218D 0.10 deleterious(0.01) benign(0.071) TCGA-D3-A3CF-06 1 206905225 206905225 G T MAPKAPK2 Silent p.R340R 0.17 TCGA-D3-A3CF-06 1 76262640 76262640 A T MSH4 5'UTR 0.07 TCGA-D3-A3CF-06 2 114257473 114257473 C G FOXD4L1 Missense_Mutation p.L214V 0.26 tolerated(0.05) possibly_damaging(0.629) TCGA-D3-A3CF-06 2 173292667 173292667 C T ITGA6 Missense_Mutation p.H51Y 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3CF-06 2 8822514 8822514 G C ID2 Missense_Mutation p.L73F 0.13 tolerated(0.31) probably_damaging(0.994) TCGA-D3-A3CF-06 2 8822644 8822644 G A ID2 Splice_Site p.X116_splice 0.19 TCGA-D3-A3CF-06 3 49051255 49051255 C A WDR6 Nonsense_Mutation p.S793* 0.23 TCGA-D3-A3CF-06 3 49165975 49165975 G A LAMB2 Missense_Mutation p.P645L 0.19 deleterious(0.05) probably_damaging(1) TCGA-D3-A3CF-06 4 110882136 110882136 C T EGF Nonsense_Mutation p.R394* 0.19 TCGA-D3-A3CF-06 5 126738307 126738307 C A MEGF10 Missense_Mutation p.H284N 0.23 deleterious(0) possibly_damaging(0.664) TCGA-D3-A3CF-06 5 13737373 13737373 C T DNAH5 Missense_Mutation p.E3815K 0.12 benign(0.292) TCGA-D3-A3CF-06 5 13737425 13737425 C A DNAH5 Missense_Mutation p.Q3797H 0.11 benign(0.216) TCGA-D3-A3CF-06 5 140203711 140203711 A G PCDHA5 Missense_Mutation p.N784S 0.07 tolerated_low_confidence(0.49) benign(0.004) TCGA-D3-A3CF-06 5 176721888 176721888 G A NSD1 Missense_Mutation p.G2507S 0.13 tolerated_low_confidence(0.71) benign(0.002) TCGA-D3-A3CF-06 5 179731790 179731790 C A GFPT2 Missense_Mutation p.Q608H 0.06 deleterious(0.04) benign(0.05) TCGA-D3-A3CF-06 7 16650312 16650312 A C ANKMY2 Missense_Mutation p.L203W 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3CF-06 8 142367126 142367126 C T GPR20 Missense_Mutation p.V300I 0.12 tolerated(0.07) benign(0.075) TCGA-D3-A3CF-06 9 136918456 136918456 C T BRD3 Silent p.K48K 0.12 TCGA-D3-A3CF-06 X 120007818 120007818 C T CT47B1 Missense_Mutation p.E278K 0.21 tolerated(0.16) unknown(0) TCGA-D3-A3CF-06 X 51150037 51150037 G A CXorf67 Missense_Mutation p.G57S 0.20 tolerated(0.08) benign(0.008) TCGA-D3-A3ML-06 10 102743173 102743173 T C SEMA4G Missense_Mutation p.M606T 0.36 tolerated(0.61) benign(0) TCGA-D3-A3ML-06 10 115327256 115327256 G A HABP2 Silent p.L26L 0.68 TCGA-D3-A3ML-06 10 116032619 116032619 G A VWA2 Silent p.G164G 0.57 TCGA-D3-A3ML-06 10 121619309 121619309 A G MCMBP Splice_Site p.X48_splice 0.60 TCGA-D3-A3ML-06 10 124266317 124266317 C T HTRA1 Silent p.I296I 0.28 TCGA-D3-A3ML-06 10 124392774 124392774 G A DMBT1 Silent p.G2026G 0.54 TCGA-D3-A3ML-06 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.60 tolerated(0.27) benign(0.011) TCGA-D3-A3ML-06 10 126177016 126177016 C T LHPP Silent p.I113I 0.65 TCGA-D3-A3ML-06 10 129868702 129868702 G A PTPRE Silent p.E427E 0.24 TCGA-D3-A3ML-06 10 13151268 13151268 C T OPTN Missense_Mutation p.T49I 0.46 tolerated(0.35) benign(0.015) TCGA-D3-A3ML-06 10 131641406 131641406 T C EBF3 Missense_Mutation p.N388D 0.27 deleterious_low_confidence(0.01) benign(0.212) TCGA-D3-A3ML-06 10 14881916 14881916 G A HSPA14 Missense_Mutation p.G24S 0.46 deleterious(0.01) benign(0.001) TCGA-D3-A3ML-06 10 15103830 15103830 C T OLAH Nonsense_Mutation p.Q144* 0.38 TCGA-D3-A3ML-06 10 15255633 15255633 C T FAM171A1 Missense_Mutation p.G652S 0.45 tolerated(0.24) probably_damaging(0.957) TCGA-D3-A3ML-06 10 15760852 15760852 C T ITGA8 Missense_Mutation p.D86N 0.46 tolerated(0.51) benign(0.019) TCGA-D3-A3ML-06 10 18242273 18242273 C T SLC39A12 Missense_Mutation p.S23F 0.29 tolerated(0.14) benign(0.211) TCGA-D3-A3ML-06 10 24884677 24884677 G A ARHGAP21 Silent p.F1227F 0.54 TCGA-D3-A3ML-06 10 26243817 26243817 G A MYO3A Silent p.E61E 0.45 TCGA-D3-A3ML-06 10 27335337 27335337 G A ANKRD26 Silent p.L644L 0.42 TCGA-D3-A3ML-06 10 27412604 27412604 C T YME1L1 Missense_Mutation p.G382E 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 10 27458944 27458944 A G MASTL Silent p.A352A 0.44 TCGA-D3-A3ML-06 10 27687357 27687357 C T PTCHD3 Missense_Mutation p.D724N 0.26 tolerated(0.52) benign(0.01) TCGA-D3-A3ML-06 10 30317950 30317950 G A KIAA1462 Missense_Mutation p.P376L 0.55 tolerated(0.3) benign(0.029) TCGA-D3-A3ML-06 10 31809222 31809222 C G ZEB1 Missense_Mutation p.P321R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3ML-06 10 37506763 37506763 T G ANKRD30A Missense_Mutation p.I1019R 0.38 tolerated(0.07) benign(0.089) TCGA-D3-A3ML-06 10 37508366 37508366 G A ANKRD30A Silent p.T1186T 0.45 TCGA-D3-A3ML-06 10 48390105 48390105 C T RBP3 Missense_Mutation p.R258Q 0.53 tolerated(0.15) probably_damaging(0.976) TCGA-D3-A3ML-06 10 49392633 49392633 C T FRMPD2 Missense_Mutation p.E854K 0.38 deleterious(0) possibly_damaging(0.753) TCGA-D3-A3ML-06 10 49667868 49667868 G A ARHGAP22 Missense_Mutation p.P189L 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 10 52390521 52390521 C T RP11-50E11.3 RNA 0.48 TCGA-D3-A3ML-06 10 61022318 61022318 C T FAM13C Missense_Mutation p.R371K 0.42 tolerated(1) benign(0.011) TCGA-D3-A3ML-06 10 61831464 61831464 C T ANK3 Missense_Mutation p.E3059K 0.42 benign(0.023) TCGA-D3-A3ML-06 10 61833673 61833673 C T ANK3 Missense_Mutation p.M2322I 0.34 benign(0.004) TCGA-D3-A3ML-06 10 61932941 61932941 C T ANK3 Missense_Mutation p.G730R 0.49 probably_damaging(1) TCGA-D3-A3ML-06 10 63700038 63700038 C T ARID5B Missense_Mutation p.H125Y 0.51 deleterious(0.02) benign(0.007) TCGA-D3-A3ML-06 10 64022544 64022544 G A RTKN2 Nonsense_Mutation p.R33* 0.40 TCGA-D3-A3ML-06 10 6506328 6506328 C T PRKCQ Silent p.G464G 0.47 TCGA-D3-A3ML-06 10 76868896 76868896 G A DUSP13 Missense_Mutation p.P7L 0.33 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-D3-A3ML-06 10 76868897 76868897 G A DUSP13 Missense_Mutation p.P7S 0.33 tolerated_low_confidence(0.15) probably_damaging(0.932) TCGA-D3-A3ML-06 10 76970895 76970895 C T VDAC2 5'UTR 0.24 TCGA-D3-A3ML-06 10 84745186 84745186 G A NRG3 Missense_Mutation p.R639Q 0.43 tolerated_low_confidence(0.15) possibly_damaging(0.712) TCGA-D3-A3ML-06 10 85972145 85972145 G A CDHR1 Silent p.G588G 0.45 TCGA-D3-A3ML-06 10 85991788 85991788 C T LRIT1 Silent p.R589R 0.40 TCGA-D3-A3ML-06 10 92662996 92662996 C T RPP30 Missense_Mutation p.H316Y 0.35 deleterious_low_confidence(0) benign(0.415) TCGA-D3-A3ML-06 10 95372407 95372407 C T PDE6C 5'UTR 0.38 TCGA-D3-A3ML-06 10 95791492 95791492 A T PLCE1 Missense_Mutation p.Y230F 0.50 tolerated_low_confidence(0.25) benign(0.135) TCGA-D3-A3ML-06 10 96044656 96044656 G A PLCE1 Missense_Mutation p.E1657K 0.52 tolerated(0.17) probably_damaging(0.999) TCGA-D3-A3ML-06 10 96112662 96112662 T C NOC3L Silent p.K283K 0.41 TCGA-D3-A3ML-06 10 96447651 96447651 G A CYP2C18 Missense_Mutation p.G98E 0.45 deleterious(0.01) possibly_damaging(0.631) TCGA-D3-A3ML-06 10 97605159 97605159 G A ENTPD1 Missense_Mutation p.E219K 0.44 tolerated(0.28) benign(0.007) TCGA-D3-A3ML-06 10 97969611 97969611 G A BLNK Silent p.S243S 0.43 TCGA-D3-A3ML-06 11 101762143 101762143 C T ANGPTL5 Missense_Mutation p.G345D 0.42 deleterious(0) probably_damaging(0.991) TCGA-D3-A3ML-06 11 101815101 101815101 C T KIAA1377 Silent p.F118F 0.36 TCGA-D3-A3ML-06 11 102479818 102479818 A G MMP20 Missense_Mutation p.F221L 0.43 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A3ML-06 11 102586045 102586045 G A MMP8 Silent p.F342F 0.35 TCGA-D3-A3ML-06 11 10483223 10483223 G A AMPD3 Missense_Mutation p.E62K 0.38 deleterious(0) benign(0.437) TCGA-D3-A3ML-06 11 113700029 113700029 G A USP28 Missense_Mutation p.P317S 0.87 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 11 117335833 117335833 G A DSCAML1 Silent p.S1090S 0.95 TCGA-D3-A3ML-06 11 118771896 118771896 G A BCL9L Silent p.G852G 0.93 TCGA-D3-A3ML-06 11 119031008 119031008 C T ABCG4 Silent p.F503F 0.89 TCGA-D3-A3ML-06 11 119217022 119217022 G A MFRP Silent p.F39F 0.93 TCGA-D3-A3ML-06 11 120349040 120349040 C T ARHGEF12 Silent p.I1236I 0.85 TCGA-D3-A3ML-06 11 121358887 121358887 C T SORL1 Silent p.S225S 0.92 TCGA-D3-A3ML-06 11 124190010 124190010 G A OR8D2 Silent p.F28F 0.90 TCGA-D3-A3ML-06 11 124949030 124949030 C T SLC37A2 Missense_Mutation p.P113S 0.94 tolerated(0.34) benign(0.02) TCGA-D3-A3ML-06 11 128807416 128807416 A T TP53AIP1 Intron 0.87 TCGA-D3-A3ML-06 11 1580207 1580207 G A DUSP8 Missense_Mutation p.S150F 0.31 deleterious(0) possibly_damaging(0.723) TCGA-D3-A3ML-06 11 17741748 17741748 C T MYOD1 Missense_Mutation p.P140L 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 11 17793365 17793365 G A KCNC1 Missense_Mutation p.E242K 0.47 tolerated(0.2) benign(0.363) TCGA-D3-A3ML-06 11 1862108 1862108 G A TNNI2 Missense_Mutation p.M82I 0.43 tolerated(1) benign(0.002) TCGA-D3-A3ML-06 11 18956457 18956457 C T MRGPRX1 5'UTR 0.20 TCGA-D3-A3ML-06 11 21250981 21250981 G A NELL1 Silent p.G510G 0.31 TCGA-D3-A3ML-06 11 22301256 22301256 C T ANO5 Missense_Mutation p.A896V 0.46 tolerated(0.21) benign(0.002) TCGA-D3-A3ML-06 11 22399212 22399212 G A SLC17A6 Missense_Mutation p.E559K 0.53 tolerated(0.58) benign(0.003) TCGA-D3-A3ML-06 11 2683106 2683106 G A KCNQ1 Intron 0.33 TCGA-D3-A3ML-06 11 27362305 27362305 T A CCDC34 Missense_Mutation p.N282I 0.50 deleterious(0) probably_damaging(0.973) TCGA-D3-A3ML-06 11 3681060 3681060 C T ART1 Missense_Mutation p.S104F 0.50 tolerated(0.11) benign(0.206) TCGA-D3-A3ML-06 11 3712658 3712658 C A NUP98 Missense_Mutation p.G1458V 0.46 tolerated(0.07) probably_damaging(1) TCGA-D3-A3ML-06 11 40135944 40135944 G A LRRC4C Silent p.D633D 0.40 TCGA-D3-A3ML-06 11 40136748 40136748 G A LRRC4C Silent p.V365V 0.41 TCGA-D3-A3ML-06 11 40136898 40136898 C T LRRC4C Nonsense_Mutation p.W315* 0.55 TCGA-D3-A3ML-06 11 43427124 43427124 C T TTC17 Missense_Mutation p.P514S 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 11 4566477 4566477 C T OR52M1 Silent p.I19I 0.38 TCGA-D3-A3ML-06 11 4661530 4661530 C T OR51D1 Silent p.F170F 0.43 TCGA-D3-A3ML-06 11 47308072 47308072 C T MADD Silent p.F880F 0.46 TCGA-D3-A3ML-06 11 47367826 47367826 C T MYBPC3 Missense_Mutation p.G341D 0.45 deleterious(0) probably_damaging(0.984) TCGA-D3-A3ML-06 11 48266801 48266801 C T OR4X2 Missense_Mutation p.S49F 0.40 deleterious(0.01) benign(0.078) TCGA-D3-A3ML-06 11 48266817 48266817 C T OR4X2 Silent p.F54F 0.53 TCGA-D3-A3ML-06 11 49805481 49805481 C T RP11-707M1.1 RNA 0.44 TCGA-D3-A3ML-06 11 49974403 49974403 G A OR4C13 Silent p.V143V 0.46 TCGA-D3-A3ML-06 11 49974404 49974404 G A OR4C13 Missense_Mutation p.G144R 0.47 tolerated_low_confidence(0.06) benign(0.236) TCGA-D3-A3ML-06 11 5364316 5364316 G A OR51B5 Silent p.L147L 0.45 TCGA-D3-A3ML-06 11 55032382 55032382 G A TRIM48 Missense_Mutation p.M17I 0.42 deleterious(0.03) possibly_damaging(0.614) TCGA-D3-A3ML-06 11 5529837 5529837 C T UBQLN3 Missense_Mutation p.G318R 0.47 tolerated(0.06) benign(0.06) TCGA-D3-A3ML-06 11 55322601 55322601 C T OR4C15 Silent p.V273V 0.41 TCGA-D3-A3ML-06 11 55587970 55587970 C T OR5D18 Silent p.L289L 0.28 TCGA-D3-A3ML-06 11 55606790 55606790 C T OR5D16 Missense_Mutation p.S188L 0.60 deleterious(0) possibly_damaging(0.672) TCGA-D3-A3ML-06 11 56143197 56143197 C T OR8U1 Missense_Mutation p.S33F 0.43 tolerated(0.1) benign(0.005) TCGA-D3-A3ML-06 11 56143378 56143378 C T OR8U1 Silent p.S93S 0.46 TCGA-D3-A3ML-06 11 56344834 56344834 G A OR5M10 Missense_Mutation p.R122C 0.52 deleterious(0.03) possibly_damaging(0.88) TCGA-D3-A3ML-06 11 5758501 5758501 C T OR56B1 Missense_Mutation p.S252L 0.47 deleterious(0) probably_damaging(0.969) TCGA-D3-A3ML-06 11 59225181 59225181 C T OR4D6 Missense_Mutation p.H250Y 0.39 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A3ML-06 11 60892552 60892552 A G CD5 Missense_Mutation p.N443S 0.35 tolerated(0.06) benign(0.175) TCGA-D3-A3ML-06 11 61488334 61488334 C T DAGLA Silent p.S93S 0.43 TCGA-D3-A3ML-06 11 62292522 62292522 G A AHNAK Missense_Mutation p.P3123S 0.42 probably_damaging(0.999) TCGA-D3-A3ML-06 11 62417062 62417062 G A INTS5 Nonsense_Mutation p.Q164* 0.42 TCGA-D3-A3ML-06 11 62417063 62417063 G A INTS5 Silent p.H163H 0.41 TCGA-D3-A3ML-06 11 62607067 62607067 C T WDR74 5'UTR 0.36 TCGA-D3-A3ML-06 11 63057725 63057725 T A SLC22A10 Missense_Mutation p.L30I 0.33 tolerated(1) benign(0.014) TCGA-D3-A3ML-06 11 63883811 63883811 G A FLRT1 Missense_Mutation p.M24I 0.38 tolerated_low_confidence(0.25) benign(0) TCGA-D3-A3ML-06 11 64883418 64883418 G A TM7SF2 Missense_Mutation p.V384M 0.52 deleterious(0) probably_damaging(0.962) TCGA-D3-A3ML-06 11 66455065 66455065 C T SPTBN2 Silent p.R2185R 0.35 TCGA-D3-A3ML-06 11 67815131 67815131 C T TCIRG1 Silent p.F441F 0.43 TCGA-D3-A3ML-06 11 6913716 6913716 G A OR2D2 Nonsense_Mutation p.Q6* 0.50 TCGA-D3-A3ML-06 11 7024006 7024006 C T ZNF214 Missense_Mutation p.D21N 0.50 tolerated(0.06) benign(0.019) TCGA-D3-A3ML-06 11 73179523 73179523 G A FAM168A 5'UTR 0.38 TCGA-D3-A3ML-06 11 7324378 7324378 G A SYT9 Missense_Mutation p.R85Q 0.50 deleterious(0.01) benign(0.012) TCGA-D3-A3ML-06 11 73879481 73879481 C T C2CD3 Missense_Mutation p.R78K 0.30 tolerated(0.14) benign(0.073) TCGA-D3-A3ML-06 11 74618229 74618229 G A XRRA1 Missense_Mutation p.S241F 0.43 deleterious(0) probably_damaging(0.95) TCGA-D3-A3ML-06 11 74880715 74880715 C T SLCO2B1 Silent p.I229I 0.48 TCGA-D3-A3ML-06 11 76873919 76873919 A T MYO7A Missense_Mutation p.L525F 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 11 76980028 76980028 G A GDPD4 Nonsense_Mutation p.Q189* 0.52 TCGA-D3-A3ML-06 11 78443559 78443559 G A TENM4 Silent p.I980I 0.34 TCGA-D3-A3ML-06 11 799501 799501 G A PIDD Missense_Mutation p.P847S 0.59 deleterious(0.02) possibly_damaging(0.619) TCGA-D3-A3ML-06 11 83183800 83183800 G A DLG2 Missense_Mutation p.L772F 0.55 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A3ML-06 11 85436750 85436750 C T SYTL2 Silent p.L250L 0.43 TCGA-D3-A3ML-06 11 88300437 88300437 G A GRM5 Missense_Mutation p.S805L 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3ML-06 11 89420557 89420557 G A FOLH1B RNA 0.52 TCGA-D3-A3ML-06 11 89882179 89882179 C T NAALAD2 Silent p.F129F 0.37 TCGA-D3-A3ML-06 11 92085540 92085540 G A FAT3 Missense_Mutation p.E88K 0.39 benign(0.069) TCGA-D3-A3ML-06 11 92600284 92600284 G A FAT3 Silent p.T4012T 0.54 TCGA-D3-A3ML-06 11 92623992 92623992 C T FAT3 Missense_Mutation p.P4495S 0.37 benign(0.343) TCGA-D3-A3ML-06 11 92715227 92715227 G A MTNR1B Missense_Mutation p.E280K 0.39 tolerated(0.45) benign(0.014) TCGA-D3-A3ML-06 11 9537777 9537777 C T ZNF143 Silent p.A518A 0.40 TCGA-D3-A3ML-06 12 101510519 101510519 G A ANO4 Missense_Mutation p.R803Q 0.45 tolerated(0.26) benign(0.082) TCGA-D3-A3ML-06 12 101555763 101555763 C T SLC5A8 Missense_Mutation p.S540N 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 12 10332047 10332047 G A TMEM52B 5'UTR 0.31 TCGA-D3-A3ML-06 12 104031983 104031983 C T STAB2 Missense_Mutation p.P300L 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3ML-06 12 108985574 108985574 C T TMEM119 Missense_Mutation p.G196R 0.51 deleterious(0) probably_damaging(0.974) TCGA-D3-A3ML-06 12 11139051 11139054 AAGT - TAS2R50 Frame_Shift_Del p.T136* 0.49 TCGA-D3-A3ML-06 12 111758423 111758423 C T CUX2 Silent p.A870A 0.80 TCGA-D3-A3ML-06 12 112082051 112082052 - C BRAP Frame_Shift_Ins p.S578Qfs*51 0.33 TCGA-D3-A3ML-06 12 113753248 113753248 G A SLC8B1 Missense_Mutation p.P343S 0.50 deleterious(0.02) possibly_damaging(0.75) TCGA-D3-A3ML-06 12 113830729 113830729 C T SDS 3'UTR 0.40 TCGA-D3-A3ML-06 12 113875895 113875895 C T SDSL 3'UTR 0.53 TCGA-D3-A3ML-06 12 117685231 117685231 C T NOS1 Silent p.R949R 0.56 TCGA-D3-A3ML-06 12 117685236 117685236 C T NOS1 Missense_Mutation p.E948K 0.38 deleterious(0.04) possibly_damaging(0.724) TCGA-D3-A3ML-06 12 117923448 117923448 G A KSR2 Silent p.I756I 0.38 TCGA-D3-A3ML-06 12 121469308 121469308 G A OASL Silent p.F198F 0.37 TCGA-D3-A3ML-06 12 12278340 12278340 T A LRP6 Missense_Mutation p.S1447C 0.42 deleterious(0.04) possibly_damaging(0.832) TCGA-D3-A3ML-06 12 123097760 123097760 A T KNTC1 Missense_Mutation p.K1908N 0.49 tolerated(0.06) probably_damaging(0.997) TCGA-D3-A3ML-06 12 124826482 124826482 G A NCOR2 Missense_Mutation p.S1692L 0.43 probably_damaging(0.998) TCGA-D3-A3ML-06 12 125396518 125396518 G A UBC Silent p.H600H 0.40 TCGA-D3-A3ML-06 12 125397886 125397886 G A UBC Silent p.H144H 0.07 TCGA-D3-A3ML-06 12 129299606 129299606 G A SLC15A4 Nonsense_Mutation p.R186* 0.47 TCGA-D3-A3ML-06 12 130015639 130015639 G A TMEM132D Silent p.I360I 0.60 TCGA-D3-A3ML-06 12 131471869 131471869 C T GPR133 Silent p.I240I 0.41 TCGA-D3-A3ML-06 12 132505635 132505635 C T EP400 Missense_Mutation p.P1487S 0.47 unknown(0) TCGA-D3-A3ML-06 12 20803412 20803412 G A PDE3A Missense_Mutation p.E935K 0.23 deleterious(0) possibly_damaging(0.687) TCGA-D3-A3ML-06 12 21997463 21997463 C T ABCC9 Missense_Mutation p.G1090E 0.44 deleterious(0) probably_damaging(0.983) TCGA-D3-A3ML-06 12 2719726 2719726 C T CACNA1C Missense_Mutation p.A1213V 0.55 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A3ML-06 12 31236830 31236830 C T DDX11 Silent p.L76L 0.42 TCGA-D3-A3ML-06 12 41831771 41831771 C T PDZRN4 Intron 0.44 TCGA-D3-A3ML-06 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A3ML-06 12 4724869 4724869 C T AKAP3 3'UTR 0.50 TCGA-D3-A3ML-06 12 48383065 48383065 C T COL2A1 Splice_Site p.X357_splice 0.31 TCGA-D3-A3ML-06 12 49061560 49061560 G A KANSL2 Missense_Mutation p.R297C 0.48 tolerated(0.12) benign(0.298) TCGA-D3-A3ML-06 12 49462839 49462839 A G RHEBL1 Missense_Mutation p.Y35H 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 12 50503344 50503344 G A GPD1 3'UTR 0.45 TCGA-D3-A3ML-06 12 52184252 52184252 C T SCN8A Missense_Mutation p.S1497L 0.50 deleterious(0) possibly_damaging(0.816) TCGA-D3-A3ML-06 12 53001989 53001989 G A KRT73 Silent p.T538T 0.39 TCGA-D3-A3ML-06 12 53238396 53238396 C T KRT78 Missense_Mutation p.E290K 0.42 deleterious(0.01) benign(0.104) TCGA-D3-A3ML-06 12 53587068 53587068 G A ITGB7 Missense_Mutation p.R528W 0.64 deleterious(0.02) benign(0.15) TCGA-D3-A3ML-06 12 54339100 54339100 C T HOXC13 3'UTR 0.36 TCGA-D3-A3ML-06 12 54858877 54858877 G A GTSF1 Missense_Mutation p.P31S 0.43 deleterious(0.02) probably_damaging(0.955) TCGA-D3-A3ML-06 12 55420622 55420622 G A NEUROD4 Silent p.R133R 0.43 TCGA-D3-A3ML-06 12 55715106 55715106 C T OR6C1 Silent p.S241S 0.38 TCGA-D3-A3ML-06 12 55886205 55886205 T G OR6C68 Missense_Mutation p.L15R 0.51 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D3-A3ML-06 12 56031542 56031542 C T OR10P1 Silent p.I289I 0.39 TCGA-D3-A3ML-06 12 57175989 57175989 G A HSD17B6 Missense_Mutation p.G182E 0.51 deleterious(0) probably_damaging(0.996) TCGA-D3-A3ML-06 12 5915236 5915236 G A ANO2 Silent p.D320D 0.54 TCGA-D3-A3ML-06 12 6061575 6061575 G A VWF Silent p.H2699H 0.39 TCGA-D3-A3ML-06 12 6061576 6061576 T G VWF Missense_Mutation p.H2699P 0.39 tolerated(0.06) benign(0.047) TCGA-D3-A3ML-06 12 64808718 64808718 C T XPOT Missense_Mutation p.S31F 0.52 deleterious(0) possibly_damaging(0.484) TCGA-D3-A3ML-06 12 66765504 66765504 G A GRIP1 Silent p.I942I 0.44 TCGA-D3-A3ML-06 12 6946709 6946709 C T LEPREL2 Silent p.T560T 0.42 TCGA-D3-A3ML-06 12 6950463 6950463 G A GNB3 Missense_Mutation p.M4I 0.59 tolerated(0.62) benign(0) TCGA-D3-A3ML-06 12 70194056 70194056 C T RAB3IP Missense_Mutation p.P335L 0.43 tolerated(0.05) benign(0.067) TCGA-D3-A3ML-06 12 70932725 70932725 G A PTPRB Nonsense_Mutation p.R1950* 0.18 TCGA-D3-A3ML-06 12 71029548 71029548 T C PTPRB Silent p.V118V 0.45 TCGA-D3-A3ML-06 12 71977434 71977434 C T LGR5 Silent p.F548F 0.41 TCGA-D3-A3ML-06 12 73012771 73012771 C T TRHDE Missense_Mutation p.P763S 0.40 tolerated(0.08) benign(0.051) TCGA-D3-A3ML-06 12 7528158 7528158 G A CD163L1 Missense_Mutation p.S907F 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A3ML-06 12 7586120 7586120 G A CD163L1 Missense_Mutation p.R99C 0.47 deleterious(0.05) benign(0.243) TCGA-D3-A3ML-06 12 75895757 75895757 A C KRR1 Silent p.G285G 0.44 TCGA-D3-A3ML-06 12 7632524 7632524 A T CD163 Missense_Mutation p.S1138T 0.35 tolerated(0.28) benign(0.118) TCGA-D3-A3ML-06 12 7637779 7637779 C T CD163 Missense_Mutation p.G898R 0.51 tolerated(0.09) probably_damaging(0.965) TCGA-D3-A3ML-06 12 7639558 7639558 G A CD163 Missense_Mutation p.S692L 0.38 tolerated(0.31) benign(0) TCGA-D3-A3ML-06 12 7640089 7640089 C T CD163 Missense_Mutation p.G639E 0.49 tolerated(0.35) probably_damaging(1) TCGA-D3-A3ML-06 12 7656313 7656313 C T CD163 5'UTR 0.37 TCGA-D3-A3ML-06 12 8050875 8050875 C T NANOGP1 RNA 0.30 TCGA-D3-A3ML-06 12 81110921 81110921 G A MYF5 Missense_Mutation p.E27K 0.54 tolerated(0.37) benign(0.226) TCGA-D3-A3ML-06 12 81657112 81657112 C T PPFIA2 Missense_Mutation p.E1205K 0.34 deleterious_low_confidence(0) benign(0.381) TCGA-D3-A3ML-06 12 91358040 91358040 G A EPYC Missense_Mutation p.R288C 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 12 91502024 91502024 C T LUM Missense_Mutation p.G245R 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 12 92821926 92821926 T C CLLU1 Intron 0.48 TCGA-D3-A3ML-06 12 96104250 96104250 C T NTN4 Silent p.R383R 0.38 TCGA-D3-A3ML-06 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.35 tolerated(0.07) benign(0.183) TCGA-D3-A3ML-06 12 97147652 97147652 G A C12orf55 Missense_Mutation p.E2606K 0.39 deleterious(0.03) benign(0.001) TCGA-D3-A3ML-06 12 98941583 98941583 C T TMPO Nonsense_Mutation p.Q329* 0.32 TCGA-D3-A3ML-06 13 109365066 109365066 C T MYO16 Missense_Mutation p.S95F 0.51 deleterious(0) probably_damaging(0.977) TCGA-D3-A3ML-06 13 110830251 110830251 C T COL4A1 Missense_Mutation p.G885E 0.52 benign(0.074) TCGA-D3-A3ML-06 13 111289542 111289542 C T CARKD Missense_Mutation p.S280F 0.45 deleterious(0.02) benign(0.25) TCGA-D3-A3ML-06 13 111289543 111289543 C T CARKD Silent p.S280S 0.45 TCGA-D3-A3ML-06 13 114005253 114005253 G A GRTP1 Missense_Mutation p.R126W 0.50 deleterious(0) possibly_damaging(0.901) TCGA-D3-A3ML-06 13 20024251 20024251 T A TPTE2 Missense_Mutation p.E313V 0.37 deleterious(0.02) benign(0.189) TCGA-D3-A3ML-06 13 28608128 28608128 C T FLT3 Missense_Mutation p.G613E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 13 36909789 36909789 G A SPG20 Missense_Mutation p.S60L 0.44 deleterious(0.03) benign(0.003) TCGA-D3-A3ML-06 13 37582930 37582930 G C EXOSC8 Missense_Mutation p.V225L 0.47 deleterious(0.01) possibly_damaging(0.656) TCGA-D3-A3ML-06 13 38266424 38266424 C T TRPC4 Missense_Mutation p.D316N 0.50 deleterious(0) probably_damaging(0.964) TCGA-D3-A3ML-06 13 38320295 38320295 C T TRPC4 Missense_Mutation p.E226K 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 13 39433451 39433451 G A FREM2 Missense_Mutation p.D2415N 0.47 deleterious(0.02) benign(0.257) TCGA-D3-A3ML-06 13 41706251 41706251 G A KBTBD6 Missense_Mutation p.R133C 0.44 deleterious(0.04) benign(0.344) TCGA-D3-A3ML-06 13 42783484 42783484 C T DGKH Silent p.I911I 0.39 TCGA-D3-A3ML-06 13 46287431 46287431 C T SPERT Missense_Mutation p.P91S 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-D3-A3ML-06 13 46708370 46708370 G A LCP1 Silent p.I506I 0.53 TCGA-D3-A3ML-06 13 52951768 52951768 G A THSD1 Silent p.S779S 0.34 TCGA-D3-A3ML-06 13 52951769 52951769 G A THSD1 Missense_Mutation p.S779F 0.33 tolerated(0.3) benign(0.001) TCGA-D3-A3ML-06 13 53624465 53624465 C T OLFM4 Silent p.L364L 0.46 TCGA-D3-A3ML-06 13 58209139 58209139 C T PCDH17 Missense_Mutation p.S820F 0.33 deleterious(0.01) benign(0.015) TCGA-D3-A3ML-06 13 77844493 77844493 G A MYCBP2 Missense_Mutation p.L338F 0.39 probably_damaging(0.963) TCGA-D3-A3ML-06 13 86368966 86368966 G A SLITRK6 Silent p.L560L 0.47 TCGA-D3-A3ML-06 14 101391221 101391221 G A SNORD113-1 RNA 0.48 TCGA-D3-A3ML-06 14 101512313 101512313 G A MIR381 RNA 0.68 TCGA-D3-A3ML-06 14 101513657 101513657 C T MIR381HG Intron 0.41 TCGA-D3-A3ML-06 14 101515034 101515034 G A MIR544A RNA 0.47 TCGA-D3-A3ML-06 14 101526943 101526943 G A MIR496 RNA 0.33 TCGA-D3-A3ML-06 14 106610569 106610569 C T IGHV3-15 Missense_Mutation p.G34E 0.40 deleterious_low_confidence(0.04) probably_damaging(0.99) TCGA-D3-A3ML-06 14 106877872 106877872 G A IGHV4-39 Missense_Mutation p.S41L 0.52 deleterious(0.04) benign(0.111) TCGA-D3-A3ML-06 14 107179109 107179109 A C IGHV2-70 Missense_Mutation p.L23W 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 14 19553809 19553809 G A POTEG Silent p.P131P 0.16 TCGA-D3-A3ML-06 14 20444378 20444378 C T OR4K15 Missense_Mutation p.S234F 0.48 deleterious(0.01) possibly_damaging(0.866) TCGA-D3-A3ML-06 14 20612572 20612572 G A OR4N5 Silent p.R226R 0.45 TCGA-D3-A3ML-06 14 20665925 20665925 C T OR11G2 Missense_Mutation p.S144F 0.51 deleterious(0) possibly_damaging(0.56) TCGA-D3-A3ML-06 14 21792937 21792937 C T RPGRIP1 Silent p.A641A 0.40 TCGA-D3-A3ML-06 14 21991060 21991060 G A SALL2 Silent p.P934P 0.43 TCGA-D3-A3ML-06 14 22434020 22434020 G A TRAV12-3 Missense_Mutation p.E25K 0.47 tolerated(0.43) benign(0.016) TCGA-D3-A3ML-06 14 22989009 22989009 G A TRAJ24 Silent p.%3D 0.70 TCGA-D3-A3ML-06 14 23889159 23889159 G A MYH7 Silent p.I1207I 0.33 TCGA-D3-A3ML-06 14 24525589 24525589 C T LRRC16B Silent p.P284P 0.48 TCGA-D3-A3ML-06 14 24656302 24656302 G A IPO4 Missense_Mutation p.P215S 0.42 tolerated(0.57) benign(0.001) TCGA-D3-A3ML-06 14 24975454 24975454 C T CMA1 Missense_Mutation p.G127E 0.46 tolerated(0.42) probably_damaging(0.962) TCGA-D3-A3ML-06 14 28733976 28733976 C T BNIP3P1 RNA 0.47 TCGA-D3-A3ML-06 14 31382861 31382861 C T STRN3 Missense_Mutation p.E415K 0.44 tolerated(0.09) probably_damaging(0.987) TCGA-D3-A3ML-06 14 34269613 34269613 G A NPAS3 Silent p.G700G 0.52 TCGA-D3-A3ML-06 14 38311550 38311550 G A TTC6 3'UTR 0.55 TCGA-D3-A3ML-06 14 50131829 50131829 T A POLE2 Missense_Mutation p.K210I 0.32 tolerated(0.06) benign(0.04) TCGA-D3-A3ML-06 14 51196403 51196403 G A NIN Silent p.S1972S 0.38 TCGA-D3-A3ML-06 14 58063571 58063571 C T SLC35F4 Silent p.G15G 0.34 TCGA-D3-A3ML-06 14 62199147 62199147 T C HIF1A Missense_Mutation p.L286S 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 14 63447722 63447722 G A KCNH5 Silent p.F270F 0.59 TCGA-D3-A3ML-06 14 66199958 66199958 T C FUT8 Silent p.N423N 0.56 TCGA-D3-A3ML-06 14 67859909 67859909 G A PLEK2 Missense_Mutation p.P147S 0.42 tolerated(0.59) benign(0.011) TCGA-D3-A3ML-06 14 70522525 70522525 G A SLC8A3 Silent p.L632L 0.40 TCGA-D3-A3ML-06 14 70633708 70633708 C T SLC8A3 Missense_Mutation p.E478K 0.45 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A3ML-06 14 70634218 70634218 C T SLC8A3 Missense_Mutation p.E308K 0.44 tolerated(0.06) possibly_damaging(0.83) TCGA-D3-A3ML-06 14 70634561 70634561 C T SLC8A3 Silent p.E193E 0.49 TCGA-D3-A3ML-06 14 70713145 70713145 A T ADAM21P1 RNA 0.30 TCGA-D3-A3ML-06 14 74823685 74823685 C T VRTN Missense_Mutation p.P67S 0.50 deleterious(0.01) benign(0.137) TCGA-D3-A3ML-06 14 76620920 76620920 G A GPATCH2L Missense_Mutation p.A72T 0.44 tolerated(0.06) possibly_damaging(0.69) TCGA-D3-A3ML-06 14 77294802 77294802 C T C14orf166B Intron 0.43 TCGA-D3-A3ML-06 14 81743843 81743843 G A STON2 Silent p.F604F 0.36 TCGA-D3-A3ML-06 14 86088309 86088309 G A FLRT2 Missense_Mutation p.E151K 0.51 deleterious(0) probably_damaging(0.967) TCGA-D3-A3ML-06 14 88478074 88478074 G A GPR65 Missense_Mutation p.E295K 0.39 deleterious(0) probably_damaging(0.979) TCGA-D3-A3ML-06 14 90650771 90650771 C T KCNK13 Silent p.T217T 0.33 TCGA-D3-A3ML-06 14 91701232 91701232 C T GPR68 Missense_Mutation p.E55K 0.38 deleterious(0) possibly_damaging(0.906) TCGA-D3-A3ML-06 14 93483112 93483112 G A ITPK1 Missense_Mutation p.P52L 0.40 deleterious(0) probably_damaging(0.963) TCGA-D3-A3ML-06 14 93943985 93943985 C T UNC79 5'UTR 0.48 TCGA-D3-A3ML-06 14 95109850 95109850 G A SERPINA13P RNA 0.44 TCGA-D3-A3ML-06 15 102346277 102346277 G A OR4F6 Missense_Mutation p.A119T 0.50 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-D3-A3ML-06 15 24922321 24922321 C T NPAP1 Missense_Mutation p.P436L 0.81 tolerated(0.17) possibly_damaging(0.651) TCGA-D3-A3ML-06 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.86 tolerated(0.56) benign(0.041) TCGA-D3-A3ML-06 15 25335137 25335137 C T SNHG14 Intron 0.95 TCGA-D3-A3ML-06 15 25420128 25420128 C T SNORD115-3 RNA 0.88 TCGA-D3-A3ML-06 15 40564839 40564839 C T PAK6 Missense_Mutation p.R425W 1.00 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3ML-06 15 43571367 43571367 G A TGM7 Missense_Mutation p.S596F 1.00 tolerated(0.1) benign(0.004) TCGA-D3-A3ML-06 15 43892244 43892244 G A STRC Missense_Mutation p.P1718L 0.86 deleterious(0.01) benign(0.353) TCGA-D3-A3ML-06 15 45402714 45402714 G A DUOX2 Missense_Mutation p.P318S 0.78 tolerated(0.53) benign(0.033) TCGA-D3-A3ML-06 15 45981331 45981331 C T SQRDL Missense_Mutation p.P404L 0.88 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 15 50519332 50519332 G A SLC27A2 Missense_Mutation p.E472K 0.39 deleterious(0.03) possibly_damaging(0.72) TCGA-D3-A3ML-06 15 50535387 50535387 C T HDC Missense_Mutation p.E399K 0.51 deleterious(0) probably_damaging(0.965) TCGA-D3-A3ML-06 15 51514603 51514603 G A CYP19A1 Silent p.L191L 0.46 TCGA-D3-A3ML-06 15 52534331 52534331 G A MYO5C Missense_Mutation p.R824C 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A3ML-06 15 66257437 66257437 G A MEGF11 Silent p.F307F 0.71 TCGA-D3-A3ML-06 15 74280975 74280975 G A STOML1 Nonsense_Mutation p.Q187* 0.51 TCGA-D3-A3ML-06 15 75248389 75248389 C T RPP25 Missense_Mutation p.G179E 0.40 tolerated(0.94) benign(0.001) TCGA-D3-A3ML-06 15 76067970 76067970 G A RP11-24M17.5 RNA 0.45 TCGA-D3-A3ML-06 15 76075465 76075465 G A RN7SL319P 5'Flank 0.45 TCGA-D3-A3ML-06 15 76633518 76633518 C T ISL2 Missense_Mutation p.P280L 0.47 deleterious(0) possibly_damaging(0.887) TCGA-D3-A3ML-06 15 78882446 78882446 C T CHRNA5 Missense_Mutation p.P238L 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 15 79058495 79058495 G A ADAMTS7 Missense_Mutation p.P1253L 0.52 tolerated(0.13) benign(0.03) TCGA-D3-A3ML-06 15 81225607 81225607 G A KIAA1199 Missense_Mutation p.G939R 0.50 deleterious(0.01) possibly_damaging(0.84) TCGA-D3-A3ML-06 15 82444088 82444088 C T EFTUD1 Missense_Mutation p.E903K 0.38 tolerated(0.77) benign(0.002) TCGA-D3-A3ML-06 15 82523261 82523261 T C EFTUD1 Silent p.E261E 0.45 TCGA-D3-A3ML-06 15 89400038 89400038 G A ACAN Missense_Mutation p.E1408K 0.71 tolerated(0.87) possibly_damaging(0.827) TCGA-D3-A3ML-06 15 93510677 93510677 C T CHD2 Missense_Mutation p.S708F 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 15 94899428 94899428 G A MCTP2 Silent p.G356G 0.39 TCGA-D3-A3ML-06 16 11873192 11873192 G A ZC3H7A Missense_Mutation p.L46F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 16 1716087 1716087 C T CRAMP1L Silent p.F922F 0.33 TCGA-D3-A3ML-06 16 19126060 19126060 C T ITPRIPL2 Nonsense_Mutation p.R93* 0.42 TCGA-D3-A3ML-06 16 2028154 2028154 C T TBL3 Silent p.I689I 0.40 TCGA-D3-A3ML-06 16 20430801 20430801 C T ACSM5 Intron 0.50 TCGA-D3-A3ML-06 16 20563565 20563565 C T ACSM2B Nonsense_Mutation p.W265* 0.41 TCGA-D3-A3ML-06 16 21031019 21031019 G A DNAH3 Silent p.I1983I 0.35 TCGA-D3-A3ML-06 16 27459993 27459993 G A IL21R Missense_Mutation p.E336K 0.34 tolerated(0.76) benign(0.023) TCGA-D3-A3ML-06 16 30999489 30999489 G A HSD3B7 Silent p.T365T 0.47 TCGA-D3-A3ML-06 16 3117383 3117383 C T IL32 Silent p.L7L 0.51 TCGA-D3-A3ML-06 16 31384573 31384573 G A ITGAX Silent p.L790L 0.36 TCGA-D3-A3ML-06 16 3140306 3140306 G A ZSCAN10 Silent p.L322L 0.12 TCGA-D3-A3ML-06 16 3604304 3604304 C T NLRC3 Missense_Mutation p.D783N 0.47 deleterious(0.03) possibly_damaging(0.902) TCGA-D3-A3ML-06 16 49764870 49764870 C T ZNF423 Missense_Mutation p.G30E 0.30 tolerated_low_confidence(0.95) benign(0.002) TCGA-D3-A3ML-06 16 5106112 5106112 G A C16orf89 Silent p.N235N 0.32 TCGA-D3-A3ML-06 16 51174711 51174711 C T SALL1 Silent p.E474E 0.33 TCGA-D3-A3ML-06 16 51174712 51174712 T C SALL1 Missense_Mutation p.E474G 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 16 52498061 52498061 C T TOX3 Missense_Mutation p.E65K 0.45 deleterious(0) probably_damaging(0.981) TCGA-D3-A3ML-06 16 53504483 53504483 C T RBL2 Missense_Mutation p.P812S 0.46 tolerated(0.14) benign(0.003) TCGA-D3-A3ML-06 16 67037200 67037200 G A CES4A Silent p.Q279Q 0.45 TCGA-D3-A3ML-06 16 67226217 67226217 C T E2F4 Silent p.F29F 0.44 TCGA-D3-A3ML-06 16 70721905 70721905 G A VAC14 Nonsense_Mutation p.Q759* 0.47 TCGA-D3-A3ML-06 16 70993717 70993717 T G HYDIN Missense_Mutation p.K1992T 0.16 probably_damaging(0.969) TCGA-D3-A3ML-06 16 71510079 71510079 G A ZNF19 Missense_Mutation p.P124L 0.49 tolerated(0.56) benign(0.001) TCGA-D3-A3ML-06 16 74447520 74447520 C T CLEC18B Missense_Mutation p.G171S 0.06 tolerated(0.27) benign(0.042) TCGA-D3-A3ML-06 16 77317862 77317862 C T ADAMTS18 Silent p.R1219R 0.38 TCGA-D3-A3ML-06 16 84691090 84691090 C T KLHL36 Missense_Mutation p.A226V 0.43 tolerated(0.34) benign(0.004) TCGA-D3-A3ML-06 16 87445466 87445466 G A ZCCHC14 Missense_Mutation p.P817L 0.32 deleterious(0) unknown(0) TCGA-D3-A3ML-06 16 89836615 89836615 G A FANCA Missense_Mutation p.P759S 0.38 tolerated(0.1) possibly_damaging(0.641) TCGA-D3-A3ML-06 16 9000287 9000287 C G USP7 Missense_Mutation p.G475A 0.47 tolerated(0.06) benign(0.417) TCGA-D3-A3ML-06 17 10354168 10354168 G A MYH4 Nonsense_Mutation p.Q1304* 0.93 TCGA-D3-A3ML-06 17 10408196 10408196 C T MYH1 Silent p.R874R 0.92 TCGA-D3-A3ML-06 17 10441113 10441113 C T MYH2 Missense_Mutation p.E486K 0.86 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A3ML-06 17 11554563 11554563 C T DNAH9 Missense_Mutation p.P759S 0.94 possibly_damaging(0.739) TCGA-D3-A3ML-06 17 12847456 12847456 C T ARHGAP44 Silent p.I268I 0.98 TCGA-D3-A3ML-06 17 17412815 17412815 G A PEMT Missense_Mutation p.P171S 0.84 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 17 26669329 26669329 G C TNFAIP1 Missense_Mutation p.R192P 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-D3-A3ML-06 17 33690337 33690337 C T SLFN11 Missense_Mutation p.G164R 0.47 tolerated(0.17) benign(0.115) TCGA-D3-A3ML-06 17 34247233 34247233 G A RDM1 Silent p.I237I 0.49 TCGA-D3-A3ML-06 17 34956105 34956105 C T DHRS11 Silent p.I196I 0.47 TCGA-D3-A3ML-06 17 35745681 35745681 C A C17orf78 Silent p.L195L 0.33 TCGA-D3-A3ML-06 17 35921605 35921605 T A SYNRG Missense_Mutation p.D523V 0.44 deleterious(0) benign(0.334) TCGA-D3-A3ML-06 17 36484264 36484264 C T GPR179 Missense_Mutation p.D1730N 0.51 tolerated(0.14) benign(0.006) TCGA-D3-A3ML-06 17 36966766 36966766 G A CWC25 Missense_Mutation p.S194L 0.25 tolerated(0.06) benign(0.132) TCGA-D3-A3ML-06 17 37187609 37187609 C T CTD-2206N4.2 5'Flank 0.32 TCGA-D3-A3ML-06 17 37922086 37922086 G A IKZF3 Missense_Mutation p.S496L 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 17 37949081 37949081 G A IKZF3 Missense_Mutation p.S90L 0.36 tolerated(0.09) benign(0.044) TCGA-D3-A3ML-06 17 38183212 38183212 C T MED24 Missense_Mutation p.E536K 0.35 tolerated(0.29) possibly_damaging(0.893) TCGA-D3-A3ML-06 17 38816301 38816301 C T KRT222 Silent p.T128T 0.42 TCGA-D3-A3ML-06 17 38954573 38954573 C T KRT28 Missense_Mutation p.E202K 0.55 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A3ML-06 17 39305503 39305503 G A KRTAP4-5 Missense_Mutation p.P173S 0.52 unknown(0) TCGA-D3-A3ML-06 17 39382989 39382989 C T KRTAP9-2 Missense_Mutation p.T28I 0.21 deleterious(0.04) unknown(0) TCGA-D3-A3ML-06 17 39411705 39411705 C T KRTAP9-9 Missense_Mutation p.T23I 0.42 tolerated(0.06) unknown(0) TCGA-D3-A3ML-06 17 39658667 39658667 C T KRT13 Silent p.E401E 0.47 TCGA-D3-A3ML-06 17 39767696 39767696 G A KRT16 Silent p.R224R 0.49 TCGA-D3-A3ML-06 17 40312111 40312111 T C KCNH4 Missense_Mutation p.T1001A 0.33 tolerated_low_confidence(0.22) benign(0.001) TCGA-D3-A3ML-06 17 40970638 40970638 C T BECN1 Missense_Mutation p.E138K 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A3ML-06 17 41571142 41571142 C T DHX8 Missense_Mutation p.P367L 0.43 tolerated(0.07) benign(0.178) TCGA-D3-A3ML-06 17 44073774 44073774 C T MAPT Missense_Mutation p.P524L 0.82 deleterious(0.02) benign(0.209) TCGA-D3-A3ML-06 17 4536486 4536486 G A ALOX15 Missense_Mutation p.S458F 0.92 tolerated(0.27) probably_damaging(0.914) TCGA-D3-A3ML-06 17 45689828 45689828 C A NPEPPS Missense_Mutation p.H700N 0.19 deleterious(0.04) possibly_damaging(0.817) TCGA-D3-A3ML-06 17 48151297 48151297 C T ITGA3 Missense_Mutation p.P392S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 17 48266831 48266831 C T COL1A1 Silent p.E912E 0.35 TCGA-D3-A3ML-06 17 48601065 48601065 G A MYCBPAP Missense_Mutation p.G562R 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 17 48678421 48678421 C T CACNA1G Silent p.L1267L 0.28 TCGA-D3-A3ML-06 17 48678422 48678422 C T CACNA1G Silent p.L1268L 0.28 TCGA-D3-A3ML-06 17 50149681 50149681 G A CA10 Missense_Mutation p.P45L 0.63 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-D3-A3ML-06 17 53237280 53237280 C T STXBP4 3'UTR 0.22 TCGA-D3-A3ML-06 17 54451968 54451968 C T ANKFN1 Missense_Mutation p.P271L 0.63 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 17 56320359 56320359 C T LPO Missense_Mutation p.L7F 0.27 tolerated(0.19) unknown(0) TCGA-D3-A3ML-06 17 56355339 56355339 C T MPO Silent p.R351R 0.70 TCGA-D3-A3ML-06 17 63154435 63154435 C T RGS9 Silent p.I59I 0.29 TCGA-D3-A3ML-06 17 63685335 63685335 A G CEP112 Missense_Mutation p.V870A 0.66 tolerated(1) benign(0.002) TCGA-D3-A3ML-06 17 66551833 66551833 T G FAM20A Silent p.P152P 0.33 TCGA-D3-A3ML-06 17 66883624 66883624 C T ABCA8 Silent p.R1016R 0.55 TCGA-D3-A3ML-06 17 67170829 67170829 G A ABCA10 Silent p.F989F 0.27 TCGA-D3-A3ML-06 17 73559139 73559139 G A LLGL2 Silent p.V191V 0.40 TCGA-D3-A3ML-06 17 73775223 73775223 G A H3F3B Silent p.S11S 0.51 TCGA-D3-A3ML-06 17 73775224 73775224 G A H3F3B Missense_Mutation p.S11F 0.51 deleterious_low_confidence(0.01) benign(0.251) TCGA-D3-A3ML-06 17 74902174 74902174 C T MGAT5B Silent p.P321P 0.37 TCGA-D3-A3ML-06 17 76457729 76457729 C T DNAH17 Missense_Mutation p.S3065N 0.40 benign(0.001) TCGA-D3-A3ML-06 17 7682693 7682693 G A DNAH2 Missense_Mutation p.E1892K 0.96 benign(0.034) TCGA-D3-A3ML-06 17 78085779 78085779 C T GAA Intron 0.49 TCGA-D3-A3ML-06 17 78931421 78931421 C T RPTOR Intron 0.50 TCGA-D3-A3ML-06 17 79219619 79219619 C T SLC38A10 Missense_Mutation p.D1033N 0.64 deleterious(0.01) benign(0.14) TCGA-D3-A3ML-06 17 8020268 8020268 C T ALOXE3 Missense_Mutation p.E192K 0.85 deleterious(0.01) possibly_damaging(0.627) TCGA-D3-A3ML-06 17 80575213 80575213 A G WDR45B Silent p.H255H 0.30 TCGA-D3-A3ML-06 18 10672701 10672701 G A PIEZO2 Silent p.F2664F 0.47 TCGA-D3-A3ML-06 18 13826628 13826628 C T MC5R Silent p.S288S 0.51 TCGA-D3-A3ML-06 18 14478346 14478346 G A CXADRP3 RNA 0.39 TCGA-D3-A3ML-06 18 28737418 28737418 C T DSC1 Silent p.R89R 0.37 TCGA-D3-A3ML-06 18 31320101 31320101 G A ASXL3 Silent p.V911V 0.25 TCGA-D3-A3ML-06 18 3151782 3151782 G A MYOM1 Nonsense_Mutation p.R585* 0.45 TCGA-D3-A3ML-06 18 33606907 33606907 G A RPRD1A Missense_Mutation p.R249C 0.43 tolerated(0.07) possibly_damaging(0.608) TCGA-D3-A3ML-06 18 42530894 42530894 G A SETBP1 Missense_Mutation p.R530Q 0.34 tolerated(0.18) probably_damaging(0.994) TCGA-D3-A3ML-06 18 42531002 42531002 C T SETBP1 Missense_Mutation p.P566L 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 18 61627562 61627562 C A HMSD Silent p.V131V 0.35 TCGA-D3-A3ML-06 18 66678171 66678171 G A CCDC102B Missense_Mutation p.E422K 0.35 deleterious(0.04) probably_damaging(0.964) TCGA-D3-A3ML-06 18 70502428 70502428 C T NETO1 Intron 0.45 TCGA-D3-A3ML-06 18 7231170 7231170 G A LRRC30 Missense_Mutation p.D12N 0.34 tolerated_low_confidence(0.42) benign(0.006) TCGA-D3-A3ML-06 18 72344201 72344201 G A ZNF407 Missense_Mutation p.S409N 0.57 tolerated(0.36) benign(0.001) TCGA-D3-A3ML-06 18 76754504 76754504 C T SALL3 Missense_Mutation p.S838F 0.38 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A3ML-06 19 1005187 1005187 G A GRIN3B Missense_Mutation p.A563T 0.53 tolerated(0.05) possibly_damaging(0.838) TCGA-D3-A3ML-06 19 10078752 10078752 G A COL5A3 Missense_Mutation p.P1440S 0.45 unknown(0) TCGA-D3-A3ML-06 19 10097268 10097268 G A COL5A3 Silent p.F735F 0.37 TCGA-D3-A3ML-06 19 10574635 10574635 C T PDE4A Missense_Mutation p.S637F 0.39 deleterious(0.01) benign(0.342) TCGA-D3-A3ML-06 19 10941040 10941040 C T DNM2 Silent p.P843P 0.40 TCGA-D3-A3ML-06 19 14037992 14037992 C T CC2D1A Silent p.L744L 0.44 TCGA-D3-A3ML-06 19 16038265 16038265 G A CYP4F11 Silent p.F124F 0.38 TCGA-D3-A3ML-06 19 16860407 16860407 C T NWD1 Silent p.L318L 0.42 TCGA-D3-A3ML-06 19 16861220 16861220 C T NWD1 Silent p.S589S 0.45 TCGA-D3-A3ML-06 19 17955082 17955082 A C JAK3 Missense_Mutation p.L49V 0.58 tolerated(0.83) benign(0.05) TCGA-D3-A3ML-06 19 18192978 18192978 C T IL12RB1 Missense_Mutation p.S74N 0.49 tolerated(0.05) benign(0.035) TCGA-D3-A3ML-06 19 18329178 18329178 G A PDE4C Missense_Mutation p.S399F 0.54 deleterious(0) probably_damaging(0.95) TCGA-D3-A3ML-06 19 18330078 18330078 C T PDE4C Missense_Mutation p.G311E 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 19 18726819 18726819 C T TMEM59L Missense_Mutation p.S148F 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 19 18726820 18726820 C T TMEM59L Silent p.S148S 0.49 TCGA-D3-A3ML-06 19 19337344 19337344 G A NCAN Silent p.G374G 0.42 TCGA-D3-A3ML-06 19 23159845 23159845 C T ZNF728 Silent p.V98V 0.33 TCGA-D3-A3ML-06 19 31768623 31768623 C T TSHZ3 Silent p.K692K 0.53 TCGA-D3-A3ML-06 19 3205964 3205964 C T NCLN Silent p.T412T 0.34 TCGA-D3-A3ML-06 19 3527745 3527745 C T FZR1 Missense_Mutation p.S196L 0.55 deleterious(0) possibly_damaging(0.907) TCGA-D3-A3ML-06 19 35617890 35617890 C T LGI4 Silent p.S220S 0.34 TCGA-D3-A3ML-06 19 36018734 36018734 C T SBSN Silent p.G150G 0.56 TCGA-D3-A3ML-06 19 36228010 36228010 G A KMT2B Missense_Mutation p.G2466S 0.21 probably_damaging(0.996) TCGA-D3-A3ML-06 19 3779053 3779053 C T MATK Silent p.R379R 0.56 TCGA-D3-A3ML-06 19 3813864 3813864 T A ZFR2 Silent p.I732I 0.50 TCGA-D3-A3ML-06 19 38229365 38229365 G A ZNF573 3'UTR 0.42 TCGA-D3-A3ML-06 19 39234587 39234587 C T CAPN12 Silent p.V73V 0.33 TCGA-D3-A3ML-06 19 39963553 39963553 C T SUPT5H Silent p.S713S 0.36 TCGA-D3-A3ML-06 19 41009898 41009898 C T SPTBN4 Silent p.A508A 0.56 TCGA-D3-A3ML-06 19 41442040 41442040 G A CYP2B7P RNA 0.48 TCGA-D3-A3ML-06 19 41442052 41442052 C T CYP2B7P RNA 0.45 TCGA-D3-A3ML-06 19 41944212 41944212 G A ATP5SL Silent p.L48L 0.51 TCGA-D3-A3ML-06 19 43257479 43257479 G A PSG8 3'Flank 0.46 TCGA-D3-A3ML-06 19 43430634 43430634 C T PSG7 Missense_Mutation p.R315Q 0.53 tolerated(0.17) benign(0.005) TCGA-D3-A3ML-06 19 43585091 43585091 G A PSG2 Silent p.I124I 0.41 TCGA-D3-A3ML-06 19 43708353 43708353 C T PSG4 Missense_Mutation p.E39K 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 19 44516636 44516636 C T ZNF230 3'UTR 0.43 TCGA-D3-A3ML-06 19 45004336 45004336 C T ZNF180 5'UTR 0.38 TCGA-D3-A3ML-06 19 4550874 4550874 C T SEMA6B Missense_Mutation p.R353Q 0.37 tolerated(0.07) probably_damaging(0.962) TCGA-D3-A3ML-06 19 49793669 49793669 G A SLC6A16 Intron 0.38 TCGA-D3-A3ML-06 19 50957588 50957588 G A MYBPC2 Nonsense_Mutation p.W659* 0.38 TCGA-D3-A3ML-06 19 51217544 51217544 C T SHANK1 Missense_Mutation p.G179R 0.20 possibly_damaging(0.83) TCGA-D3-A3ML-06 19 51329191 51329191 C T KLK15 Missense_Mutation p.G211E 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 19 51728536 51728536 G A CD33 Missense_Mutation p.G34S 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A3ML-06 19 51955749 51955749 C T SIGLEC8 Missense_Mutation p.G462R 0.58 tolerated(0.39) benign(0.002) TCGA-D3-A3ML-06 19 51986344 51986344 C T CEACAM18 Silent p.S310S 0.44 TCGA-D3-A3ML-06 19 51986544 51986544 C T CEACAM18 Missense_Mutation p.P377L 0.41 deleterious(0.03) benign(0.034) TCGA-D3-A3ML-06 19 52250221 52250221 C T FPR1 Silent p.T9T 0.36 TCGA-D3-A3ML-06 19 52327708 52327708 C T FPR3 Missense_Mutation p.S236F 0.35 deleterious(0) possibly_damaging(0.464) TCGA-D3-A3ML-06 19 53058354 53058354 C T ZNF808 Missense_Mutation p.H729Y 0.43 deleterious(0) probably_damaging(0.981) TCGA-D3-A3ML-06 19 53058509 53058509 C T ZNF808 Silent p.Y780Y 0.50 TCGA-D3-A3ML-06 19 53454394 53454394 G A ZNF816 Missense_Mutation p.L212F 0.46 tolerated(0.2) benign(0.067) TCGA-D3-A3ML-06 19 53793768 53793768 G A BIRC8 5'UTR 0.30 TCGA-D3-A3ML-06 19 54074910 54074910 C T ZNF331 Missense_Mutation p.A21V 0.51 deleterious(0) probably_damaging(0.983) TCGA-D3-A3ML-06 19 54074911 54074911 C T ZNF331 Silent p.A21A 0.51 TCGA-D3-A3ML-06 19 5456081 5456081 C T ZNRF4 Silent p.L193L 0.49 TCGA-D3-A3ML-06 19 54744776 54744776 A T LILRA6 Missense_Mutation p.C296S 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 19 54760148 54760148 C T LILRB5 Missense_Mutation p.G138E 0.47 tolerated(0.07) possibly_damaging(0.64) TCGA-D3-A3ML-06 19 54823320 54823320 C T LILRA5 Missense_Mutation p.E75K 0.55 tolerated(0.09) benign(0.377) TCGA-D3-A3ML-06 19 54849235 54849235 G A LILRA4 Silent p.P209P 0.41 TCGA-D3-A3ML-06 19 55044266 55044266 C T KIR3DX1 Silent p.F13F 0.54 TCGA-D3-A3ML-06 19 55085872 55085872 C T LILRA2 Missense_Mutation p.H59Y 0.43 tolerated(0.93) benign(0.154) TCGA-D3-A3ML-06 19 55086318 55086318 G A LILRA2 Missense_Mutation p.G158E 0.44 deleterious(0.01) possibly_damaging(0.61) TCGA-D3-A3ML-06 19 55143422 55143422 G A LILRB1 Missense_Mutation p.S132N 0.43 deleterious(0.01) benign(0.205) TCGA-D3-A3ML-06 19 55144507 55144507 C T LILRB1 Silent p.G333G 0.38 TCGA-D3-A3ML-06 19 55606108 55606108 G C PPP1R12C Missense_Mutation p.P505A 0.36 tolerated(0.37) benign(0.022) TCGA-D3-A3ML-06 19 55805451 55805451 C T BRSK1 Silent p.F175F 0.45 TCGA-D3-A3ML-06 19 55817708 55817708 C T BRSK1 Missense_Mutation p.P660L 0.38 deleterious(0.05) benign(0.379) TCGA-D3-A3ML-06 19 56114179 56114179 C T ZNF524 Missense_Mutation p.P234L 0.48 deleterious(0.04) possibly_damaging(0.573) TCGA-D3-A3ML-06 19 56320396 56320396 C T NLRP11 Missense_Mutation p.G527E 0.41 tolerated(1) benign(0) TCGA-D3-A3ML-06 19 56538553 56538553 C T NLRP5 Silent p.F318F 0.33 TCGA-D3-A3ML-06 19 56952437 56952437 G A ZNF667 3'UTR 0.35 TCGA-D3-A3ML-06 19 57037297 57037297 C T ZNF471 Missense_Mutation p.H621Y 0.43 deleterious(0) probably_damaging(0.923) TCGA-D3-A3ML-06 19 57175184 57175184 C T ZNF835 Silent p.L461L 0.47 TCGA-D3-A3ML-06 19 57176531 57176531 T G ZNF835 Silent p.A12A 0.49 TCGA-D3-A3ML-06 19 57640966 57640966 C T USP29 Missense_Mutation p.S308F 0.57 deleterious(0) probably_damaging(0.961) TCGA-D3-A3ML-06 19 6690735 6690735 C T C3 Missense_Mutation p.G1132R 0.24 deleterious(0) probably_damaging(0.992) TCGA-D3-A3ML-06 19 681438 681438 C T FSTL3 Missense_Mutation p.S204F 0.33 deleterious(0.01) benign(0.032) TCGA-D3-A3ML-06 19 6828173 6828173 C T VAV1 Silent p.L338L 0.39 TCGA-D3-A3ML-06 19 6974646 6974646 C T EMR4P RNA 0.22 TCGA-D3-A3ML-06 19 7614986 7614986 C T PNPLA6 Missense_Mutation p.S610F 0.39 deleterious(0.02) benign(0.012) TCGA-D3-A3ML-06 19 7831649 7831649 G A CLEC4M Missense_Mutation p.E298K 0.41 deleterious(0.05) probably_damaging(0.985) TCGA-D3-A3ML-06 19 8174147 8174147 C T FBN3 Missense_Mutation p.G1528S 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 19 8807799 8807799 G A ACTL9 3'UTR 0.47 TCGA-D3-A3ML-06 19 8999412 8999412 C T MUC16 Missense_Mutation p.R13588K 0.05 benign(0.42) TCGA-D3-A3ML-06 19 9045956 9045956 G A MUC16 Missense_Mutation p.T11892I 0.46 possibly_damaging(0.683) TCGA-D3-A3ML-06 19 9047693 9047693 G A MUC16 Missense_Mutation p.P11313L 0.51 benign(0) TCGA-D3-A3ML-06 19 9068223 9068223 C T MUC16 Missense_Mutation p.R6408K 0.46 unknown(0) TCGA-D3-A3ML-06 19 9071243 9071243 C T MUC16 Silent p.E5401E 0.51 TCGA-D3-A3ML-06 19 9084930 9084930 C T MUC16 Nonsense_Mutation p.W2295* 0.58 TCGA-D3-A3ML-06 19 9088177 9088177 C T MUC16 Missense_Mutation p.G1213E 0.43 unknown(0) TCGA-D3-A3ML-06 19 9091441 9091441 C T MUC16 Missense_Mutation p.G125E 0.36 unknown(0) TCGA-D3-A3ML-06 19 9213398 9213398 G A OR7G2 Silent p.I195I 0.48 TCGA-D3-A3ML-06 19 9213797 9213797 C T OR7G2 Silent p.G62G 0.45 TCGA-D3-A3ML-06 19 9225792 9225792 G A OR7G1 Silent p.F216F 0.41 TCGA-D3-A3ML-06 19 9578746 9578746 C T ZNF560 Missense_Mutation p.E293K 0.45 tolerated(0.12) possibly_damaging(0.636) TCGA-D3-A3ML-06 1 103352442 103352442 C T COL11A1 Missense_Mutation p.M1593I 0.42 unknown(0) TCGA-D3-A3ML-06 1 103356006 103356006 C T COL11A1 Splice_Site p.X1452_splice 0.34 TCGA-D3-A3ML-06 1 108311104 108311104 G A VAV3 Silent p.L226L 0.29 TCGA-D3-A3ML-06 1 109486637 109486637 T A CLCC1 Missense_Mutation p.I128F 0.38 deleterious(0) possibly_damaging(0.815) TCGA-D3-A3ML-06 1 11169428 11169428 C A MTOR Splice_Site p.X2483_splice 0.44 TCGA-D3-A3ML-06 1 111957747 111957747 G A OVGP1 Missense_Mutation p.S459F 0.39 deleterious_low_confidence(0.03) benign(0.035) TCGA-D3-A3ML-06 1 111964030 111964030 G A OVGP1 Silent p.I257I 0.47 TCGA-D3-A3ML-06 1 112045923 112045923 C T ADORA3 Missense_Mutation p.M18I 0.39 tolerated_low_confidence(0.25) benign(0.005) TCGA-D3-A3ML-06 1 112238021 112238021 C T RAP1A Missense_Mutation p.S39F 0.40 tolerated(0.21) probably_damaging(0.994) TCGA-D3-A3ML-06 1 113242921 113242921 A T MOV10 Missense_Mutation p.N960I 0.45 tolerated(0.3) benign(0) TCGA-D3-A3ML-06 1 114636418 114636418 G A SYT6 Missense_Mutation p.P423L 0.26 tolerated_low_confidence(0.12) benign(0.026) TCGA-D3-A3ML-06 1 115147608 115147608 A G DENND2C Silent p.L534L 0.27 TCGA-D3-A3ML-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.63 deleterious(0) benign(0.109) TCGA-D3-A3ML-06 1 116243733 116243733 G A CASQ2 3'UTR 0.65 TCGA-D3-A3ML-06 1 116311088 116311088 G A CASQ2 Silent p.F25F 0.37 TCGA-D3-A3ML-06 1 11907313 11907313 C T NPPA Missense_Mutation p.D103N 0.35 tolerated(0.1) benign(0.276) TCGA-D3-A3ML-06 1 1255908 1255908 C T CPSF3L Missense_Mutation p.R49Q 0.49 tolerated(0.06) probably_damaging(0.948) TCGA-D3-A3ML-06 1 12837394 12837394 C T PRAMEF12 Silent p.I368I 0.36 TCGA-D3-A3ML-06 1 12853448 12853448 C T PRAMEF1 Silent p.S24S 0.67 TCGA-D3-A3ML-06 1 13448237 13448237 G A PRAMEF13 Missense_Mutation p.P413L 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 1 147090643 147090643 C T BCL9 Missense_Mutation p.R228W 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A3ML-06 1 147380613 147380613 C T GJA8 Silent p.I177I 0.24 TCGA-D3-A3ML-06 1 149762894 149762894 G A FCGR1A Missense_Mutation p.E316K 0.27 tolerated(0.27) benign(0.015) TCGA-D3-A3ML-06 1 150679133 150679133 C T HORMAD1 Missense_Mutation p.E234K 0.27 deleterious(0.02) possibly_damaging(0.831) TCGA-D3-A3ML-06 1 150958816 150958816 C T ANXA9 Silent p.F159F 0.34 TCGA-D3-A3ML-06 1 151265399 151265399 C T PI4KB Missense_Mutation p.D806N 0.60 tolerated(0.06) benign(0.267) TCGA-D3-A3ML-06 1 152127833 152127833 G A RPTN Missense_Mutation p.S581F 0.28 tolerated(0.07) benign(0.188) TCGA-D3-A3ML-06 1 152552126 152552126 G A LCE3D 3'UTR 0.29 TCGA-D3-A3ML-06 1 153390600 153390600 C T S100A7A Silent p.I14I 0.35 TCGA-D3-A3ML-06 1 157665918 157665918 C T FCRL3 Silent p.V348V 0.63 TCGA-D3-A3ML-06 1 158224439 158224439 G A CD1A 5'UTR 0.29 TCGA-D3-A3ML-06 1 158299751 158299751 G A CD1B Silent p.I166I 0.59 TCGA-D3-A3ML-06 1 158687228 158687228 C T OR6K3 Silent p.R226R 0.39 TCGA-D3-A3ML-06 1 159283646 159283646 G A OR10J3 Silent p.S268S 0.58 TCGA-D3-A3ML-06 1 159410433 159410433 G A OR10J1 Silent p.L295L 0.63 TCGA-D3-A3ML-06 1 159505705 159505705 G A OR10J5 Silent p.F31F 0.63 TCGA-D3-A3ML-06 1 15953255 15953255 A T DDI2 Missense_Mutation p.K77M 0.39 tolerated(0.24) possibly_damaging(0.832) TCGA-D3-A3ML-06 1 160156081 160156081 C T ATP1A4 Silent p.L995L 0.64 TCGA-D3-A3ML-06 1 160465995 160465995 G A SLAMF6 Missense_Mutation p.P80S 0.65 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A3ML-06 1 161518384 161518384 C T FCGR3A Missense_Mutation p.G85E 0.18 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 1 161518385 161518385 C T FCGR3A Missense_Mutation p.G85R 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 1 161736150 161736150 A T ATF6 5'UTR 0.67 TCGA-D3-A3ML-06 1 167407857 167407857 C T CD247 Missense_Mutation p.D84N 0.30 deleterious(0.01) possibly_damaging(0.879) TCGA-D3-A3ML-06 1 16893807 16893807 G A NBPF1 Silent p.V902V 0.04 TCGA-D3-A3ML-06 1 169699695 169699695 C T SELE Missense_Mutation p.G198E 0.66 tolerated(0.38) possibly_damaging(0.654) TCGA-D3-A3ML-06 1 175306726 175306726 C T TNR Missense_Mutation p.G1158R 0.27 tolerated(0.24) benign(0.246) TCGA-D3-A3ML-06 1 176709307 176709307 G A PAPPA2 Missense_Mutation p.E1376K 0.23 tolerated(0.09) benign(0.004) TCGA-D3-A3ML-06 1 176998581 176998581 C T ASTN1 Intron 0.12 TCGA-D3-A3ML-06 1 18152407 18152407 C T ACTL8 Missense_Mutation p.P165L 0.37 deleterious(0.01) possibly_damaging(0.638) TCGA-D3-A3ML-06 1 182869175 182869175 C T SHCBP1L Missense_Mutation p.M635I 0.33 tolerated_low_confidence(0.33) benign(0.023) TCGA-D3-A3ML-06 1 183539972 183539972 G A NCF2 Silent p.V204V 0.34 TCGA-D3-A3ML-06 1 18808425 18808425 C T KLHDC7A Missense_Mutation p.P317L 0.62 tolerated(0.12) benign(0.015) TCGA-D3-A3ML-06 1 190067802 190067802 C T BRINP3 Missense_Mutation p.M549I 0.58 tolerated(0.27) probably_damaging(0.914) TCGA-D3-A3ML-06 1 19166824 19166824 G A TAS1R2 Missense_Mutation p.R597C 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 1 19168236 19168236 G A TAS1R2 Silent p.L526L 0.43 TCGA-D3-A3ML-06 1 196397273 196397273 C T KCNT2 Missense_Mutation p.D316N 0.60 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A3ML-06 1 196398861 196398861 C T KCNT2 Missense_Mutation p.R222Q 0.53 deleterious(0) probably_damaging(0.955) TCGA-D3-A3ML-06 1 196434428 196434428 G A KCNT2 Silent p.F211F 0.52 TCGA-D3-A3ML-06 1 197390634 197390634 C T CRB1 Missense_Mutation p.S559F 0.60 tolerated(0.07) benign(0.114) TCGA-D3-A3ML-06 1 198672482 198672482 C T PTPRC Silent p.V213V 0.59 TCGA-D3-A3ML-06 1 198723533 198723533 C T PTPRC Silent p.F1215F 0.28 TCGA-D3-A3ML-06 1 201965471 201965471 C T RNPEP Intron 0.66 TCGA-D3-A3ML-06 1 202911228 202911228 C T ADIPOR1 Silent p.V308V 0.28 TCGA-D3-A3ML-06 1 205893592 205893592 G A SLC26A9 Missense_Mutation p.S472F 0.31 deleterious(0.03) possibly_damaging(0.853) TCGA-D3-A3ML-06 1 207870952 207870952 G A CR1L Missense_Mutation p.D323N 0.29 deleterious(0.04) probably_damaging(0.978) TCGA-D3-A3ML-06 1 207890918 207890918 A T CR1L Silent p.P508P 0.59 TCGA-D3-A3ML-06 1 214170398 214170398 C T PROX1 Missense_Mutation p.R174W 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 1 215259862 215259862 C T KCNK2 Silent p.F66F 0.69 TCGA-D3-A3ML-06 1 227935398 227935398 G A SNAP47 Silent p.Q32Q 0.52 TCGA-D3-A3ML-06 1 228210406 228210406 C T WNT3A Missense_Mutation p.S37L 0.59 deleterious(0.02) benign(0.043) TCGA-D3-A3ML-06 1 228475608 228475608 G A OBSCN Missense_Mutation p.R3682Q 0.66 benign(0.004) TCGA-D3-A3ML-06 1 228558884 228558884 C T OBSCN Missense_Mutation p.P7759L 0.76 benign(0.356) TCGA-D3-A3ML-06 1 22974024 22974024 C T C1QC Silent p.V162V 0.51 TCGA-D3-A3ML-06 1 232581413 232581413 G A SIPA1L2 Missense_Mutation p.P1072L 0.29 deleterious(0) possibly_damaging(0.703) TCGA-D3-A3ML-06 1 237995978 237995978 A T RYR2 3'UTR 0.64 TCGA-D3-A3ML-06 1 238090870 238090870 C T RP11-193H5.1 RNA 0.20 TCGA-D3-A3ML-06 1 240370994 240370994 G A FMN2 Missense_Mutation p.G961E 0.29 unknown(0) TCGA-D3-A3ML-06 1 241261968 241261968 G A RGS7 Missense_Mutation p.S58F 0.34 deleterious(0) benign(0.401) TCGA-D3-A3ML-06 1 247587447 247587447 C T NLRP3 Silent p.I234I 0.30 TCGA-D3-A3ML-06 1 248004808 248004808 G A OR11L1 Missense_Mutation p.R131C 0.30 deleterious(0) benign(0.409) TCGA-D3-A3ML-06 1 248004809 248004809 G A OR11L1 Silent p.L130L 0.29 TCGA-D3-A3ML-06 1 248263371 248263371 G A OR2L13 Missense_Mutation p.G232R 0.32 deleterious(0) possibly_damaging(0.818) TCGA-D3-A3ML-06 1 248263477 248263477 C T OR2L13 Missense_Mutation p.P267L 0.33 deleterious(0) probably_damaging(0.981) TCGA-D3-A3ML-06 1 248637395 248637395 C T OR2T3 Silent p.S248S 0.15 TCGA-D3-A3ML-06 1 25573390 25573390 G A C1orf63 Missense_Mutation p.S22L 0.35 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A3ML-06 1 25669526 25669526 C T TMEM50A Silent p.Y56Y 0.54 TCGA-D3-A3ML-06 1 26140457 26140457 C T SEPN1 Silent p.S491S 0.33 TCGA-D3-A3ML-06 1 26509883 26509883 T C CNKSR1 Missense_Mutation p.V244A 0.53 deleterious(0) possibly_damaging(0.709) TCGA-D3-A3ML-06 1 29028999 29028999 G A GMEB1 Silent p.G226G 0.50 TCGA-D3-A3ML-06 1 29533401 29533401 C T MECR Silent p.E141E 0.50 TCGA-D3-A3ML-06 1 33583599 33583599 C T ADC Silent p.L376L 0.52 TCGA-D3-A3ML-06 1 34330060 34330060 C T HMGB4 Missense_Mutation p.P90S 0.36 deleterious(0.03) possibly_damaging(0.715) TCGA-D3-A3ML-06 1 35351346 35351346 C T DLGAP3 Silent p.Q549Q 0.59 TCGA-D3-A3ML-06 1 37267398 37267398 C T GRIK3 3'UTR 0.60 TCGA-D3-A3ML-06 1 38227492 38227492 G A EPHA10 Silent p.G145G 0.40 TCGA-D3-A3ML-06 1 40766904 40766904 C T COL9A2 Missense_Mutation p.A674T 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A3ML-06 1 43805088 43805088 A T MPL Missense_Mutation p.T180S 0.54 tolerated(0.27) benign(0.024) TCGA-D3-A3ML-06 1 45225993 45225993 C T KIF2C Missense_Mutation p.S470F 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 1 47279880 47279880 G A CYP4B1 Splice_Site p.X259_splice 0.53 TCGA-D3-A3ML-06 1 47403676 47403676 C T CYP4A11 Missense_Mutation p.G110E 0.42 deleterious(0.01) possibly_damaging(0.862) TCGA-D3-A3ML-06 1 47515170 47515170 G A CYP4X1 Missense_Mutation p.G450E 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A3ML-06 1 54360202 54360202 A G DIO1 Missense_Mutation p.I107V 0.54 tolerated(0.1) benign(0.039) TCGA-D3-A3ML-06 1 54605663 54605663 G A CDCP2 Nonsense_Mutation p.Q294* 0.44 TCGA-D3-A3ML-06 1 57209873 57209873 G A C1orf168 Missense_Mutation p.S485F 0.43 deleterious(0) probably_damaging(0.995) TCGA-D3-A3ML-06 1 57395027 57395027 C T C8B 3'UTR 0.37 TCGA-D3-A3ML-06 1 57756640 57756640 C T DAB1 Silent p.K21K 0.37 TCGA-D3-A3ML-06 1 59002291 59002291 A C OMA1 Missense_Mutation p.V208G 0.43 deleterious(0) benign(0.126) TCGA-D3-A3ML-06 1 60392341 60392341 G A CYP2J2 Silent p.V26V 0.35 TCGA-D3-A3ML-06 1 61848968 61848968 C T NFIA Missense_Mutation p.P381S 0.39 tolerated(0.16) benign(0.086) TCGA-D3-A3ML-06 1 6488376 6488376 G A ESPN Missense_Mutation p.G129R 0.50 tolerated(0.06) probably_damaging(0.977) TCGA-D3-A3ML-06 1 6505846 6505846 C T ESPN Missense_Mutation p.P439S 0.52 deleterious(0.02) possibly_damaging(0.493) TCGA-D3-A3ML-06 1 6511937 6511937 C T ESPN Silent p.V702V 0.25 TCGA-D3-A3ML-06 1 70587496 70587496 G A LRRC7 Missense_Mutation p.E1514K 0.45 tolerated(0.32) possibly_damaging(0.702) TCGA-D3-A3ML-06 1 75038368 75038368 G A C1orf173 Missense_Mutation p.S1009L 0.47 tolerated(0.86) benign(0.007) TCGA-D3-A3ML-06 1 76007202 76007202 C T SLC44A5 Splice_Site 0.35 TCGA-D3-A3ML-06 1 82408894 82408894 G A LPHN2 Silent p.V213V 0.41 TCGA-D3-A3ML-06 1 8418827 8418827 C A RERE Silent p.L1256L 0.42 TCGA-D3-A3ML-06 1 89325691 89325691 G A GTF2B Nonsense_Mutation p.R137* 0.30 TCGA-D3-A3ML-06 1 89448837 89448837 A G RBMXL1 Missense_Mutation p.Y225H 0.46 tolerated(0.14) benign(0.443) TCGA-D3-A3ML-06 1 89520454 89520454 C T GBP1 Missense_Mutation p.E526K 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3ML-06 1 89657032 89657032 G A GBP4 Silent p.F276F 0.38 TCGA-D3-A3ML-06 1 9099904 9099904 G A SLC2A5 Silent p.S280S 0.47 TCGA-D3-A3ML-06 1 91784645 91784645 C T HFM1 Silent p.L934L 0.42 TCGA-D3-A3ML-06 1 91851333 91851333 C A HFM1 Missense_Mutation p.D185Y 0.50 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-D3-A3ML-06 1 93620384 93620384 C T TMED5 Missense_Mutation p.R178K 0.43 tolerated(0.13) benign(0.327) TCGA-D3-A3ML-06 1 94495990 94495990 C T ABCA4 Nonsense_Mutation p.W1449* 0.32 TCGA-D3-A3ML-06 20 1617024 1617024 C T SIRPG Silent p.G186G 0.43 TCGA-D3-A3ML-06 20 18534880 18534880 C T SEC23B Missense_Mutation p.T665I 0.43 deleterious(0.01) benign(0.363) TCGA-D3-A3ML-06 20 23476513 23476513 G A CST8 Missense_Mutation p.E131K 0.50 deleterious(0.05) benign(0.13) TCGA-D3-A3ML-06 20 23476594 23476594 C T CST8 3'UTR 0.57 TCGA-D3-A3ML-06 20 2542649 2542649 G A TMC2 Missense_Mutation p.E183K 0.55 tolerated(0.21) benign(0.082) TCGA-D3-A3ML-06 20 2641335 2641335 G A IDH3B Intron 0.49 TCGA-D3-A3ML-06 20 29956453 29956453 C T DEFB118 5'UTR 0.37 TCGA-D3-A3ML-06 20 29960770 29960770 C T DEFB118 Missense_Mutation p.P57S 0.56 tolerated(0.13) possibly_damaging(0.857) TCGA-D3-A3ML-06 20 3018759 3018759 G A PTPRA Missense_Mutation p.D797N 0.40 tolerated(0.13) probably_damaging(0.998) TCGA-D3-A3ML-06 20 33565766 33565766 C T MYH7B Silent p.L28L 0.43 TCGA-D3-A3ML-06 20 33879969 33879969 G A FAM83C Silent p.L47L 0.25 TCGA-D3-A3ML-06 20 34765945 34765945 C T EPB41L1 Silent p.F138F 0.55 TCGA-D3-A3ML-06 20 40743881 40743881 C T PTPRT Silent p.E1019E 0.46 TCGA-D3-A3ML-06 20 41101199 41101199 G A PTPRT Missense_Mutation p.P386L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 20 43836656 43836656 C T SEMG1 Missense_Mutation p.P240S 0.46 tolerated(0.81) probably_damaging(0.999) TCGA-D3-A3ML-06 20 46275833 46275833 C T NCOA3 Missense_Mutation p.P1090L 0.38 deleterious(0) benign(0.064) TCGA-D3-A3ML-06 20 49218740 49218740 C T FAM65C Missense_Mutation p.E506K 0.62 tolerated(0.9) benign(0.009) TCGA-D3-A3ML-06 20 56140121 56140121 C T PCK1 Silent p.L448L 0.44 TCGA-D3-A3ML-06 20 57415160 57415160 G A RP4-806M20.3 5'Flank 0.37 TCGA-D3-A3ML-06 20 57876655 57876655 G A EDN3 Silent p.Q81Q 0.46 TCGA-D3-A3ML-06 20 58342249 58342249 C - PHACTR3 Frame_Shift_Del p.P184Lfs*25 0.27 TCGA-D3-A3ML-06 20 62200240 62200240 G A HELZ2 Silent p.L401L 0.38 TCGA-D3-A3ML-06 20 62664308 62664308 C T PRPF6 Missense_Mutation p.L930F 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 20 62839420 62839420 G A MYT1 Missense_Mutation p.E291K 0.62 benign(0.272) TCGA-D3-A3ML-06 20 9417795 9417795 G A PLCB4 Silent p.K908K 0.39 TCGA-D3-A3ML-06 21 10906836 10906836 G A TPTE 3'UTR 0.26 TCGA-D3-A3ML-06 21 10969079 10969079 C T TPTE Missense_Mutation p.E57K 0.22 tolerated(0.4) benign(0.004) TCGA-D3-A3ML-06 21 11021181 11021181 C T BAGE2 RNA 0.08 TCGA-D3-A3ML-06 21 11038844 11038844 G A BAGE2 RNA 0.09 TCGA-D3-A3ML-06 21 17962568 17962568 C T MIR125B2 RNA 0.47 TCGA-D3-A3ML-06 21 19647556 19647556 C T TMPRSS15 Missense_Mutation p.M954I 0.40 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A3ML-06 21 27945309 27945309 G A CYYR1 5'UTR 0.50 TCGA-D3-A3ML-06 21 30909549 30909549 G A GRIK1 3'UTR 0.47 TCGA-D3-A3ML-06 21 35140024 35140024 C T ITSN1 Nonsense_Mutation p.R312* 0.43 TCGA-D3-A3ML-06 21 39671264 39671264 C T KCNJ15 Silent p.P27P 0.57 TCGA-D3-A3ML-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 21 41450620 41450620 C T DSCAM Missense_Mutation p.D1569N 0.41 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A3ML-06 21 43802211 43802211 G A TMPRSS3 Silent p.I305I 0.42 TCGA-D3-A3ML-06 21 45820199 45820199 G A TRPM2 Missense_Mutation p.V756M 0.35 deleterious(0) possibly_damaging(0.764) TCGA-D3-A3ML-06 21 46330212 46330212 C T ITGB2 Nonsense_Mutation p.W45* 0.41 TCGA-D3-A3ML-06 21 47775473 47775473 G A PCNT Missense_Mutation p.R623K 0.59 benign(0.364) TCGA-D3-A3ML-06 22 17308499 17308499 C T HSFY1P1 RNA 0.29 TCGA-D3-A3ML-06 22 19393350 19393350 T C HIRA Missense_Mutation p.E119G 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 22 20457137 20457137 C T RIMBP3 Missense_Mutation p.D1389N 0.17 tolerated(0.34) benign(0.022) TCGA-D3-A3ML-06 22 20819207 20819207 G A KLHL22 Silent p.F350F 0.46 TCGA-D3-A3ML-06 22 21065005 21065005 C T PI4KA Missense_Mutation p.R2022Q 0.15 tolerated(1) benign(0.091) TCGA-D3-A3ML-06 22 21377654 21377654 T C P2RX6 Silent p.I243I 0.42 TCGA-D3-A3ML-06 22 21988617 21988617 C T CCDC116 Missense_Mutation p.R127W 0.52 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 22 22937427 22937427 C T IGLV3-32 Missense_Mutation p.S82F 0.29 deleterious(0) probably_damaging(0.949) TCGA-D3-A3ML-06 22 23401729 23401729 C T RTDR1 Missense_Mutation p.E320K 0.46 tolerated(0.87) benign(0.01) TCGA-D3-A3ML-06 22 24037192 24037192 G A RGL4 Missense_Mutation p.D358N 0.38 tolerated(0.08) benign(0.06) TCGA-D3-A3ML-06 22 24040498 24040498 G A RGL4 Missense_Mutation p.E454K 0.38 deleterious(0.03) benign(0.049) TCGA-D3-A3ML-06 22 24579117 24579117 G A SUSD2 Missense_Mutation p.D57N 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 22 25294019 25294019 G A SGSM1 Silent p.G756G 0.52 TCGA-D3-A3ML-06 22 26291229 26291229 G A MYO18B Silent p.R1550R 0.25 TCGA-D3-A3ML-06 22 26343750 26343750 G A MYO18B Missense_Mutation p.D1902N 0.48 deleterious(0) possibly_damaging(0.894) TCGA-D3-A3ML-06 22 26423017 26423017 G A MYO18B Silent p.P2359P 0.43 TCGA-D3-A3ML-06 22 26709789 26709789 G A SEZ6L Missense_Mutation p.E646K 0.38 deleterious(0.03) benign(0.166) TCGA-D3-A3ML-06 22 28146983 28146983 G A MN1 Nonsense_Mutation p.R1295* 0.47 TCGA-D3-A3ML-06 22 29886371 29886371 G A NEFH Silent p.V914V 0.57 TCGA-D3-A3ML-06 22 30124621 30124621 G A CABP7 Missense_Mutation p.D86N 0.44 tolerated(0.35) probably_damaging(0.998) TCGA-D3-A3ML-06 22 30683173 30683173 G A GATSL3 Missense_Mutation p.S159F 0.47 tolerated(0.11) benign(0.001) TCGA-D3-A3ML-06 22 30866542 30866542 G A SEC14L3 Missense_Mutation p.P28S 0.42 tolerated(0.23) probably_damaging(0.998) TCGA-D3-A3ML-06 22 31600528 31600528 C T RNF185 Silent p.L179L 0.37 TCGA-D3-A3ML-06 22 31674349 31674349 C T LIMK2 3'Flank 0.50 TCGA-D3-A3ML-06 22 32633271 32633271 G C SLC5A4 Silent p.T208T 0.57 TCGA-D3-A3ML-06 22 32810260 32810260 T A BPIFC 3'UTR 0.49 TCGA-D3-A3ML-06 22 40283500 40283500 C T ENTHD1 Missense_Mutation p.G85R 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 22 41166750 41166750 G A SLC25A17 3'UTR 0.60 TCGA-D3-A3ML-06 22 42084871 42084871 G A NHP2L1 5'UTR 0.33 TCGA-D3-A3ML-06 22 42141989 42141989 C T MEI1 Missense_Mutation p.L547F 0.80 deleterious(0) probably_damaging(0.992) TCGA-D3-A3ML-06 22 45750926 45750926 C T SMC1B Missense_Mutation p.D1011N 0.50 tolerated(0.89) benign(0.003) TCGA-D3-A3ML-06 22 50580515 50580515 G A MOV10L1 Silent p.R692R 0.39 TCGA-D3-A3ML-06 2 100217929 100217929 C A AFF3 Missense_Mutation p.G472C 0.67 tolerated(0.27) benign(0.092) TCGA-D3-A3ML-06 2 103148844 103148844 G A SLC9A4 Silent p.R698R 0.59 TCGA-D3-A3ML-06 2 103343399 103343399 G A MFSD9 Missense_Mutation p.S111F 0.30 deleterious(0.01) benign(0.209) TCGA-D3-A3ML-06 2 103431219 103431219 C T TMEM182 Missense_Mutation p.S161L 0.29 tolerated(1) benign(0.132) TCGA-D3-A3ML-06 2 107041640 107041640 G A RGPD3 Missense_Mutation p.S928L 0.50 deleterious(0.04) benign(0.003) TCGA-D3-A3ML-06 2 107049657 107049657 A G RGPD3 Missense_Mutation p.Y764H 0.34 tolerated(0.54) benign(0.001) TCGA-D3-A3ML-06 2 107459756 107459756 C T ST6GAL2 Silent p.K226K 0.79 TCGA-D3-A3ML-06 2 108917299 108917299 G A SULT1C2 Intron 0.32 TCGA-D3-A3ML-06 2 109384259 109384259 C T RANBP2 Missense_Mutation p.R2422C 0.24 deleterious(0.01) possibly_damaging(0.856) TCGA-D3-A3ML-06 2 111666390 111666390 C T ACOXL Silent p.T271T 0.40 TCGA-D3-A3ML-06 2 114258155 114258155 C T FOXD4L1 3'UTR 0.45 TCGA-D3-A3ML-06 2 114258156 114258156 C T FOXD4L1 3'UTR 0.47 TCGA-D3-A3ML-06 2 125261908 125261908 C T CNTNAP5 Missense_Mutation p.P367S 0.42 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A3ML-06 2 128415080 128415080 G A LIMS2 Missense_Mutation p.S47F 0.40 deleterious(0.03) benign(0.319) TCGA-D3-A3ML-06 2 131486734 131486734 G A GPR148 Missense_Mutation p.E4K 0.55 tolerated(0.34) benign(0.002) TCGA-D3-A3ML-06 2 131985911 131985911 G A POTEE Missense_Mutation p.G338R 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A3ML-06 2 132240374 132240374 G A TUBA3D Missense_Mutation p.G436S 0.41 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A3ML-06 2 133541884 133541884 C T NCKAP5 Missense_Mutation p.E834K 0.49 deleterious(0.03) benign(0.052) TCGA-D3-A3ML-06 2 136566965 136566965 G A LCT Silent p.F984F 0.36 TCGA-D3-A3ML-06 2 141081561 141081561 G A LRP1B Nonsense_Mutation p.R4139* 0.58 TCGA-D3-A3ML-06 2 160901448 160901448 G A PLA2R1 Silent p.L110L 0.29 TCGA-D3-A3ML-06 2 166152597 166152597 G A SCN2A Silent p.K88K 0.41 TCGA-D3-A3ML-06 2 166201067 166201067 C T SCN2A Silent p.L855L 0.44 TCGA-D3-A3ML-06 2 167085261 167085261 C T SCN9A Nonsense_Mutation p.W1371* 0.28 TCGA-D3-A3ML-06 2 168102789 168102789 G A XIRP2 Silent p.E1629E 0.64 TCGA-D3-A3ML-06 2 168106668 168106668 G A XIRP2 Silent p.Q2922Q 0.26 TCGA-D3-A3ML-06 2 169571631 169571631 C T CERS6 Missense_Mutation p.L244F 0.33 tolerated(0.48) benign(0.01) TCGA-D3-A3ML-06 2 169851889 169851889 G A ABCB11 Missense_Mutation p.S194L 0.64 deleterious(0.04) possibly_damaging(0.794) TCGA-D3-A3ML-06 2 170103347 170103347 C T LRP2 Missense_Mutation p.E1020K 0.61 possibly_damaging(0.887) TCGA-D3-A3ML-06 2 179442511 179442511 C T TTN Missense_Mutation p.R22881Q 0.27 TCGA-D3-A3ML-06 2 179529403 179529403 C T TTN Silent p.K12060K 0.73 TCGA-D3-A3ML-06 2 179535871 179535871 G A TTN Missense_Mutation p.P11752S 0.58 TCGA-D3-A3ML-06 2 179596985 179596985 G A TTN Missense_Mutation p.P5571S 0.25 TCGA-D3-A3ML-06 2 179615354 179615354 C T TTN Intron 0.28 TCGA-D3-A3ML-06 2 179615721 179615721 G A TTN Intron 0.53 TCGA-D3-A3ML-06 2 17962301 17962301 C T GEN1 Missense_Mutation p.H608Y 0.25 tolerated(0.43) benign(0.001) TCGA-D3-A3ML-06 2 179634824 179634824 G A TTN Silent p.V2868V 0.57 TCGA-D3-A3ML-06 2 179640118 179640118 C T TTN Missense_Mutation p.G2158E 0.58 TCGA-D3-A3ML-06 2 179702035 179702035 C T CCDC141 Missense_Mutation p.G1304E 0.67 tolerated(0.15) benign(0.073) TCGA-D3-A3ML-06 2 181922535 181922535 C T UBE2E3 Missense_Mutation p.P121S 0.54 deleterious(0) probably_damaging(0.928) TCGA-D3-A3ML-06 2 183848072 183848072 G A NCKAP1 Missense_Mutation p.S354F 0.28 tolerated(0.06) benign(0.166) TCGA-D3-A3ML-06 2 1842969 1842969 C T MYT1L Missense_Mutation p.G1009E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 2 185801052 185801052 C T ZNF804A Missense_Mutation p.S310L 0.58 deleterious(0.05) benign(0.075) TCGA-D3-A3ML-06 2 185802465 185802465 C T ZNF804A Missense_Mutation p.S781L 0.61 deleterious(0) probably_damaging(0.95) TCGA-D3-A3ML-06 2 185802642 185802642 C A ZNF804A Missense_Mutation p.S840Y 0.29 deleterious(0) possibly_damaging(0.723) TCGA-D3-A3ML-06 2 187693354 187693354 T A ZSWIM2 Missense_Mutation p.K420I 0.26 tolerated(0.17) benign(0.081) TCGA-D3-A3ML-06 2 189870933 189870933 G A COL3A1 Missense_Mutation p.G1014E 0.63 probably_damaging(1) TCGA-D3-A3ML-06 2 196756491 196756491 A G DNAH7 Missense_Mutation p.L1645S 0.43 deleterious(0) possibly_damaging(0.696) TCGA-D3-A3ML-06 2 206659623 206659623 G A NRP2 Silent p.L879L 0.60 TCGA-D3-A3ML-06 2 207619911 207619911 C T MDH1B Silent p.E244E 0.67 TCGA-D3-A3ML-06 2 211299141 211299141 G A LANCL1 3'UTR 0.57 TCGA-D3-A3ML-06 2 211541730 211541730 G A CPS1 Splice_Site p.X1431_splice 0.34 TCGA-D3-A3ML-06 2 212578363 212578363 C T ERBB4 Silent p.V298V 0.29 TCGA-D3-A3ML-06 2 215809822 215809822 G A ABCA12 Missense_Mutation p.P2416S 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 2 215914479 215914479 A G ABCA12 Silent p.Y188Y 0.49 TCGA-D3-A3ML-06 2 219618964 219618964 C T TTLL4 Missense_Mutation p.S1151F 0.58 tolerated_low_confidence(0.19) benign(0.01) TCGA-D3-A3ML-06 2 220286266 220286266 G A DES Missense_Mutation p.E410K 0.63 deleterious(0) probably_damaging(0.986) TCGA-D3-A3ML-06 2 227942727 227942727 C T COL4A4 Missense_Mutation p.A624T 0.56 benign(0.025) TCGA-D3-A3ML-06 2 228786135 228786135 G A DAW1 Silent p.G357G 0.27 TCGA-D3-A3ML-06 2 228882995 228882995 C T SPHKAP Missense_Mutation p.G859R 0.61 tolerated(0.63) benign(0.001) TCGA-D3-A3ML-06 2 228884296 228884296 C T SPHKAP Missense_Mutation p.G425E 0.22 tolerated(0.08) benign(0.071) TCGA-D3-A3ML-06 2 228886577 228886577 C T SPHKAP Missense_Mutation p.E183K 0.34 deleterious(0) probably_damaging(0.965) TCGA-D3-A3ML-06 2 229890371 229890371 C T PID1 Missense_Mutation p.E242K 0.27 deleterious(0.03) benign(0.11) TCGA-D3-A3ML-06 2 230282870 230282870 C T DNER Silent p.R521R 0.64 TCGA-D3-A3ML-06 2 230910901 230910901 C T SLC16A14 Missense_Mutation p.R314Q 0.57 tolerated(0.19) possibly_damaging(0.746) TCGA-D3-A3ML-06 2 233322373 233322373 G A ALPI Silent p.G249G 0.42 TCGA-D3-A3ML-06 2 233431625 233431625 C T EIF4E2 Silent p.A154A 0.58 TCGA-D3-A3ML-06 2 234093124 234093124 C T INPP5D Silent p.S732S 0.19 TCGA-D3-A3ML-06 2 234602163 234602163 C T UGT1A6 Silent p.F171F 0.33 TCGA-D3-A3ML-06 2 237240104 237240104 C T IQCA1 Silent p.Q757Q 0.26 TCGA-D3-A3ML-06 2 238287293 238287293 G A COL6A3 Missense_Mutation p.P828L 0.58 possibly_damaging(0.49) TCGA-D3-A3ML-06 2 241835228 241835228 G A C2orf54 Missense_Mutation p.R63C 0.36 deleterious(0) possibly_damaging(0.72) TCGA-D3-A3ML-06 2 25383934 25383934 G A POMC 3'UTR 0.75 TCGA-D3-A3ML-06 2 25464476 25464476 C G DNMT3A Silent p.G679G 0.66 TCGA-D3-A3ML-06 2 25754382 25754382 G A DTNB Missense_Mutation p.P321S 0.22 deleterious(0.04) possibly_damaging(0.619) TCGA-D3-A3ML-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.29 TCGA-D3-A3ML-06 2 29917789 29917789 G A ALK Silent p.I293I 0.67 TCGA-D3-A3ML-06 2 31573035 31573035 G A XDH Missense_Mutation p.R896W 0.32 deleterious(0) probably_damaging(0.978) TCGA-D3-A3ML-06 2 33246090 33246090 C T LTBP1 Missense_Mutation p.S227L 0.65 tolerated(0.66) benign(0.001) TCGA-D3-A3ML-06 2 3744941 3744941 G A ALLC Missense_Mutation p.D249N 0.63 tolerated(0.11) benign(0.12) TCGA-D3-A3ML-06 2 44099359 44099359 C T ABCG8 Intron 0.34 TCGA-D3-A3ML-06 2 48874099 48874099 T C STON1-GTF2A1L Missense_Mutation p.L1003P 0.53 deleterious(0.03) benign(0.058) TCGA-D3-A3ML-06 2 49190250 49190250 G A FSHR Silent p.I570I 0.39 TCGA-D3-A3ML-06 2 69046383 69046383 C T ARHGAP25 Nonsense_Mutation p.R378* 0.39 TCGA-D3-A3ML-06 2 71894516 71894516 G A DYSF Silent p.R1776R 0.41 TCGA-D3-A3ML-06 2 79363891 79363891 G A REG1P RNA 0.30 TCGA-D3-A3ML-06 2 85051268 85051268 G A TRABD2A Silent p.V332V 0.56 TCGA-D3-A3ML-06 2 85662929 85662929 G T SH2D6 Missense_Mutation p.E131D 0.27 deleterious(0.04) benign(0.371) TCGA-D3-A3ML-06 2 85894227 85894227 A G SFTPB Splice_Site p.X101_splice 0.51 TCGA-D3-A3ML-06 2 8871242 8871242 G A KIDINS220 Missense_Mutation p.R1642W 0.58 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3ML-06 2 89513070 89513070 C T IGKV1-27 Silent p.G63G 0.60 TCGA-D3-A3ML-06 2 90154175 90154175 G A IGKV3D-15 Missense_Mutation p.G88R 0.48 deleterious(0.01) benign(0.216) TCGA-D3-A3ML-06 2 95950777 95950777 C T PROM2 Silent p.L597L 0.31 TCGA-D3-A3ML-06 3 100962942 100962942 C T IMPG2 Missense_Mutation p.E745K 0.52 tolerated(0.23) benign(0.004) TCGA-D3-A3ML-06 3 108172897 108172897 C T MYH15 Silent p.Q805Q 0.44 TCGA-D3-A3ML-06 3 111296389 111296389 G A CD96 Missense_Mutation p.G195D 0.38 tolerated(0.22) benign(0.024) TCGA-D3-A3ML-06 3 111317000 111317000 C T CD96 Missense_Mutation p.P297S 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 3 111602855 111602855 G A PHLDB2 Intron 0.63 TCGA-D3-A3ML-06 3 120998780 120998780 G A STXBP5L Missense_Mutation p.R696Q 0.42 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A3ML-06 3 121994750 121994750 C T CASR Missense_Mutation p.S490F 0.39 deleterious(0) possibly_damaging(0.821) TCGA-D3-A3ML-06 3 122630875 122630875 C T SEMA5B Missense_Mutation p.D1034N 0.56 tolerated(0.19) benign(0.27) TCGA-D3-A3ML-06 3 124998089 124998089 G A ZNF148 Silent p.I154I 0.29 TCGA-D3-A3ML-06 3 129195155 129195155 C T IFT122 Intron 0.44 TCGA-D3-A3ML-06 3 129223186 129223186 C T IFT122 Missense_Mutation p.P909S 0.45 deleterious(0) probably_damaging(0.969) TCGA-D3-A3ML-06 3 130187644 130187644 G A COL6A5 Missense_Mutation p.E2266K 0.23 tolerated(0.06) benign(0.11) TCGA-D3-A3ML-06 3 130282361 130282361 G A COL6A6 Missense_Mutation p.E172K 0.42 tolerated(0.08) benign(0.032) TCGA-D3-A3ML-06 3 130284200 130284200 C T COL6A6 Nonsense_Mutation p.R342* 0.44 TCGA-D3-A3ML-06 3 130399857 130399857 G A PIK3R4 Missense_Mutation p.P1254L 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A3ML-06 3 140265380 140265380 T A CLSTN2 Missense_Mutation p.F511I 0.48 tolerated(0.44) benign(0.11) TCGA-D3-A3ML-06 3 14176301 14176301 C T TMEM43 Silent p.S205S 0.40 TCGA-D3-A3ML-06 3 14201292 14201292 G A XPC Silent p.T313T 0.50 TCGA-D3-A3ML-06 3 143412150 143412150 C G SLC9A9 Splice_Site p.X178_splice 0.49 TCGA-D3-A3ML-06 3 148596481 148596481 C T CPA3 Silent p.V140V 0.41 TCGA-D3-A3ML-06 3 14862387 14862387 C T FGD5 Silent p.S603S 0.47 TCGA-D3-A3ML-06 3 150931667 150931667 C T P2RY14 Nonsense_Mutation p.W146* 0.47 TCGA-D3-A3ML-06 3 151012751 151012751 G A GPR87 Missense_Mutation p.P95S 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 3 151131060 151131060 C T MED12L Nonsense_Mutation p.R2057* 0.51 TCGA-D3-A3ML-06 3 164710098 164710098 T A SI Intron 0.50 TCGA-D3-A3ML-06 3 164751194 164751194 A G SI Missense_Mutation p.S852P 0.14 deleterious(0.01) possibly_damaging(0.503) TCGA-D3-A3ML-06 3 164760924 164760924 C T SI Missense_Mutation p.E643K 0.50 deleterious(0) possibly_damaging(0.652) TCGA-D3-A3ML-06 3 168833510 168833510 G A MECOM Missense_Mutation p.S594L 0.54 tolerated(0.12) benign(0.207) TCGA-D3-A3ML-06 3 172835467 172835467 C T SPATA16 Missense_Mutation p.D19N 0.45 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-D3-A3ML-06 3 183217380 183217380 G A KLHL6 Missense_Mutation p.S382L 0.47 deleterious(0) probably_damaging(0.942) TCGA-D3-A3ML-06 3 183756374 183756374 G A HTR3D Missense_Mutation p.G366E 0.36 tolerated(0.58) benign(0.163) TCGA-D3-A3ML-06 3 185229341 185229341 C T LIPH Missense_Mutation p.M413I 0.37 tolerated(0.49) benign(0.002) TCGA-D3-A3ML-06 3 189586470 189586470 C T TP63 Missense_Mutation p.S365L 0.45 tolerated(0.36) benign(0.005) TCGA-D3-A3ML-06 3 193039582 193039582 G A ATP13A5 Silent p.S601S 0.43 TCGA-D3-A3ML-06 3 193081933 193081933 G A ATP13A5 Missense_Mutation p.P67L 0.47 deleterious(0.03) benign(0.016) TCGA-D3-A3ML-06 3 21462775 21462775 C T ZNF385D Silent p.P373P 0.43 TCGA-D3-A3ML-06 3 21478616 21478616 G A ZNF385D Silent p.I173I 0.41 TCGA-D3-A3ML-06 3 21606094 21606094 T C ZNF385D Missense_Mutation p.N83S 0.44 tolerated(0.27) benign(0.001) TCGA-D3-A3ML-06 3 23574053 23574053 C T UBE2E2 Silent p.F123F 0.35 TCGA-D3-A3ML-06 3 23574054 23574054 C T UBE2E2 Nonsense_Mutation p.R124* 0.34 TCGA-D3-A3ML-06 3 26751235 26751235 G A LRRC3B Missense_Mutation p.M24I 0.40 tolerated(0.21) benign(0.292) TCGA-D3-A3ML-06 3 27203938 27203938 C T NEK10 Silent p.%3D 0.43 TCGA-D3-A3ML-06 3 28361070 28361071 AC T CMC1 Frame_Shift_Del p.T91Lfs*22 0.26 TCGA-D3-A3ML-06 3 30032653 30032653 G A RBMS3 Silent p.V420V 0.45 TCGA-D3-A3ML-06 3 30032654 30032654 G A RBMS3 Missense_Mutation p.D421N 0.45 deleterious_low_confidence(0) benign(0.119) TCGA-D3-A3ML-06 3 30713311 30713311 C T TGFBR2 Silent p.F237F 0.47 TCGA-D3-A3ML-06 3 35770939 35770939 T C ARPP21 Missense_Mutation p.V423A 0.41 tolerated(0.15) benign(0.002) TCGA-D3-A3ML-06 3 37053566 37053566 C T MLH1 Missense_Mutation p.S218F 0.32 tolerated(0.14) possibly_damaging(0.653) TCGA-D3-A3ML-06 3 37053567 37053567 C T MLH1 Silent p.S218S 0.32 TCGA-D3-A3ML-06 3 38135215 38135215 C T DLEC1 Missense_Mutation p.L626F 0.51 tolerated(0.17) possibly_damaging(0.745) TCGA-D3-A3ML-06 3 38601889 38601889 G A SCN5A Missense_Mutation p.P1332S 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 3 38627361 38627361 C T SCN5A Missense_Mutation p.D870N 0.47 tolerated(0.32) benign(0.001) TCGA-D3-A3ML-06 3 38768474 38768474 C T SCN10A Missense_Mutation p.D904N 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A3ML-06 3 38835375 38835375 C T SCN10A Missense_Mutation p.E43K 0.38 tolerated(0.31) benign(0.002) TCGA-D3-A3ML-06 3 3886947 3886947 G A LRRN1 Missense_Mutation p.D208N 0.40 deleterious(0.05) benign(0.134) TCGA-D3-A3ML-06 3 3888096 3888096 G A LRRN1 Missense_Mutation p.D591N 0.45 deleterious(0) benign(0.004) TCGA-D3-A3ML-06 3 39170393 39170393 G A TTC21A Silent p.L629L 0.41 TCGA-D3-A3ML-06 3 42916005 42916005 G A CYP8B1 Missense_Mutation p.S435L 0.40 deleterious(0) possibly_damaging(0.667) TCGA-D3-A3ML-06 3 42916670 42916670 G A CYP8B1 Silent p.F213F 0.34 TCGA-D3-A3ML-06 3 43602868 43602868 G A ANO10 Silent p.S440S 0.53 TCGA-D3-A3ML-06 3 44776311 44776311 C T ZNF501 Missense_Mutation p.P133L 0.34 deleterious_low_confidence(0.02) benign(0.01) TCGA-D3-A3ML-06 3 45877095 45877095 C T LZTFL1 Missense_Mutation p.E104K 0.38 deleterious(0.04) possibly_damaging(0.523) TCGA-D3-A3ML-06 3 46619372 46619372 G A TDGF1 5'UTR 0.51 TCGA-D3-A3ML-06 3 48575961 48575961 G A PFKFB4 Missense_Mutation p.S201F 0.50 benign(0.04) TCGA-D3-A3ML-06 3 49700786 49700786 C T BSN Missense_Mutation p.P3732L 0.37 unknown(0) TCGA-D3-A3ML-06 3 49700787 49700787 C T BSN Silent p.P3732P 0.35 TCGA-D3-A3ML-06 3 49898612 49898612 C T CAMKV Splice_Site p.X188_splice 0.52 TCGA-D3-A3ML-06 3 50151440 50151440 A G RBM5 Missense_Mutation p.K559E 0.46 deleterious(0.01) benign(0.142) TCGA-D3-A3ML-06 3 50645401 50645401 G A CISH Silent p.F155F 0.43 TCGA-D3-A3ML-06 3 51312530 51312530 C T DOCK3 Missense_Mutation p.P857S 0.41 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A3ML-06 3 51378681 51378681 C T DOCK3 Silent p.T1260T 0.46 TCGA-D3-A3ML-06 3 51679644 51679644 C T RAD54L2 Silent p.F898F 0.33 TCGA-D3-A3ML-06 3 52264891 52264891 G A TWF2 Nonsense_Mutation p.Q202* 0.45 TCGA-D3-A3ML-06 3 57489826 57489826 C T DNAH12 Missense_Mutation p.D335N 0.32 tolerated(0.29) benign(0.012) TCGA-D3-A3ML-06 3 64518882 64518882 G A ADAMTS9 Missense_Mutation p.S1893L 0.43 deleterious(0) possibly_damaging(0.679) TCGA-D3-A3ML-06 3 66431951 66431951 A T LRIG1 Missense_Mutation p.W908R 0.46 tolerated_low_confidence(0.11) benign(0.013) TCGA-D3-A3ML-06 3 66431952 66431952 C T LRIG1 Silent p.P907P 0.45 TCGA-D3-A3ML-06 3 9036072 9036072 C T SRGAP3 Missense_Mutation p.G788D 0.44 deleterious(0) probably_damaging(0.976) TCGA-D3-A3ML-06 3 97888089 97888089 C T OR5H15 Silent p.I182I 0.17 TCGA-D3-A3ML-06 4 102776269 102776269 G A BANK1 Missense_Mutation p.E183K 0.34 tolerated(0.2) possibly_damaging(0.721) TCGA-D3-A3ML-06 4 107845215 107845215 C T DKK2 Missense_Mutation p.E226K 0.59 deleterious(0) probably_damaging(0.971) TCGA-D3-A3ML-06 4 110682807 110682807 G A CFI Missense_Mutation p.S175F 0.50 tolerated(0.06) benign(0.063) TCGA-D3-A3ML-06 4 111474558 111474558 G A ENPEP Silent p.G863G 0.42 TCGA-D3-A3ML-06 4 111542364 111542364 C T PITX2 Missense_Mutation p.E123K 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 4 113538706 113538706 G A C4orf21 Missense_Mutation p.S831L 0.50 deleterious(0) possibly_damaging(0.889) TCGA-D3-A3ML-06 4 114288914 114288914 C T ANK2 Missense_Mutation p.P3742L 0.38 benign(0.033) TCGA-D3-A3ML-06 4 115767075 115767075 C G NDST4 Silent p.S673S 0.46 TCGA-D3-A3ML-06 4 122082298 122082298 C T TNIP3 Missense_Mutation p.R124K 0.56 tolerated(0.17) benign(0.069) TCGA-D3-A3ML-06 4 123536859 123536859 C T IL21 Missense_Mutation p.G113E 0.26 tolerated(0.18) benign(0.017) TCGA-D3-A3ML-06 4 123663377 123663377 C T BBS12 Silent p.S110S 0.39 TCGA-D3-A3ML-06 4 126398462 126398462 C T FAT4 Missense_Mutation p.A4149V 0.50 probably_damaging(0.989) TCGA-D3-A3ML-06 4 128665863 128665863 T G SLC25A31 Missense_Mutation p.V90G 0.52 deleterious(0.01) possibly_damaging(0.882) TCGA-D3-A3ML-06 4 128715270 128715270 G A HSPA4L Missense_Mutation p.G49E 0.43 deleterious(0) probably_damaging(0.991) TCGA-D3-A3ML-06 4 141889002 141889002 C T RNF150 Missense_Mutation p.M170I 0.46 deleterious(0) probably_damaging(0.968) TCGA-D3-A3ML-06 4 145659005 145659005 G A HHIP Missense_Mutation p.E667K 0.49 deleterious_low_confidence(0) benign(0.218) TCGA-D3-A3ML-06 4 148827821 148827821 C T ARHGAP10 Missense_Mutation p.S356F 0.38 deleterious(0.01) possibly_damaging(0.642) TCGA-D3-A3ML-06 4 153691231 153691231 G A TIGD4 Missense_Mutation p.S309L 0.41 deleterious(0) benign(0.345) TCGA-D3-A3ML-06 4 154625437 154625437 G A TLR2 Missense_Mutation p.E460K 0.49 deleterious(0.01) possibly_damaging(0.476) TCGA-D3-A3ML-06 4 155236972 155236972 C T DCHS2 Missense_Mutation p.E1275K 0.56 tolerated(0.12) benign(0.39) TCGA-D3-A3ML-06 4 155505694 155505694 A G FGA Missense_Mutation p.L728S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 4 155527898 155527898 T C FGG Missense_Mutation p.N363S 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 4 158284073 158284073 G A GRIA2 Silent p.A843A 0.35 TCGA-D3-A3ML-06 4 164247704 164247704 C T NPY1R Translation_Start_Site p.M1? 0.55 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D3-A3ML-06 4 170428878 170428878 G A NEK1 Silent p.I633I 0.53 TCGA-D3-A3ML-06 4 173734779 173734779 G A GALNTL6 Silent p.G276G 0.45 TCGA-D3-A3ML-06 4 175898197 175898197 G A ADAM29 Silent p.R507R 0.41 TCGA-D3-A3ML-06 4 177142720 177142720 G A ASB5 Missense_Mutation p.P139L 0.41 deleterious(0) probably_damaging(0.946) TCGA-D3-A3ML-06 4 183676138 183676138 G A TENM3 Missense_Mutation p.D1540N 0.38 tolerated(0.07) benign(0) TCGA-D3-A3ML-06 4 183714424 183714424 G A TENM3 Missense_Mutation p.R2200K 0.33 deleterious(0) benign(0.364) TCGA-D3-A3ML-06 4 183714425 183714425 G A TENM3 Silent p.R2200R 0.33 TCGA-D3-A3ML-06 4 187455411 187455411 T C MTNR1A Missense_Mutation p.N162S 0.58 deleterious(0.04) benign(0.348) TCGA-D3-A3ML-06 4 25674845 25674845 C T SLC34A2 Silent p.V395V 0.48 TCGA-D3-A3ML-06 4 265765 265765 G A ZNF732 Missense_Mutation p.A294V 0.80 deleterious(0.01) possibly_damaging(0.832) TCGA-D3-A3ML-06 4 38051485 38051485 C T TBC1D1 Missense_Mutation p.H626Y 0.55 tolerated(0.42) possibly_damaging(0.548) TCGA-D3-A3ML-06 4 40438467 40438467 G A RBM47 Missense_Mutation p.P441S 0.49 deleterious(0.02) possibly_damaging(0.541) TCGA-D3-A3ML-06 4 41648259 41648259 G A LIMCH1 Silent p.R406R 0.45 TCGA-D3-A3ML-06 4 41984145 41984145 C T DCAF4L1 Silent p.F112F 0.35 TCGA-D3-A3ML-06 4 46060523 46060523 C T GABRG1 Missense_Mutation p.E248K 0.44 deleterious(0.01) benign(0.082) TCGA-D3-A3ML-06 4 47605541 47605541 G A CORIN Silent p.I895I 0.46 TCGA-D3-A3ML-06 4 47938579 47938579 G C CNGA1 Missense_Mutation p.I713M 0.47 deleterious(0.03) benign(0.23) TCGA-D3-A3ML-06 4 55979560 55979560 C T KDR Missense_Mutation p.G296D 0.52 tolerated(0.07) benign(0.063) TCGA-D3-A3ML-06 4 56763037 56763037 C T EXOC1 Missense_Mutation p.T703I 0.38 tolerated(0.48) benign(0.001) TCGA-D3-A3ML-06 4 6303928 6303928 C T WFS1 Silent p.I802I 0.48 TCGA-D3-A3ML-06 4 68424576 68424576 G A STAP1 Missense_Mutation p.E17K 0.37 tolerated(0.13) probably_damaging(0.948) TCGA-D3-A3ML-06 4 6864552 6864552 C T KIAA0232 Missense_Mutation p.P815S 0.45 tolerated_low_confidence(0.1) benign(0.329) TCGA-D3-A3ML-06 4 68691466 68691466 C T TMPRSS11D Missense_Mutation p.G360E 0.41 tolerated(0.2) probably_damaging(0.971) TCGA-D3-A3ML-06 4 69433570 69433570 C T UGT2B17 Silent p.R211R 0.54 TCGA-D3-A3ML-06 4 70505082 70505082 C T UGT2A2 Missense_Mutation p.D93N 0.47 tolerated(0.05) benign(0.003) TCGA-D3-A3ML-06 4 71201766 71201766 C T CABS1 Missense_Mutation p.S337L 0.45 tolerated(0.09) benign(0.001) TCGA-D3-A3ML-06 4 74315124 74315124 C T AFP Silent p.Y377Y 0.37 TCGA-D3-A3ML-06 4 74315125 74315125 C T AFP Nonsense_Mutation p.Q378* 0.38 TCGA-D3-A3ML-06 4 75250501 75250501 G A EREG Silent p.G162G 0.49 TCGA-D3-A3ML-06 4 7725526 7725526 G A SORCS2 Missense_Mutation p.E843K 0.30 tolerated(0.9) benign(0.168) TCGA-D3-A3ML-06 4 81791162 81791162 C T C4orf22 Missense_Mutation p.R134C 0.52 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A3ML-06 4 81967534 81967534 C T BMP3 Missense_Mutation p.P320L 0.50 deleterious(0.02) possibly_damaging(0.883) TCGA-D3-A3ML-06 4 8391429 8391429 C T ACOX3 Missense_Mutation p.D445N 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 4 85654607 85654607 C T WDFY3 Silent p.K2383K 0.41 TCGA-D3-A3ML-06 4 88533604 88533604 G A DSPP Missense_Mutation p.G89E 0.40 probably_damaging(0.909) TCGA-D3-A3ML-06 5 101593663 101593663 G A SLCO4C1 Silent p.F419F 0.57 TCGA-D3-A3ML-06 5 101748833 101748833 C T SLCO6A1 Missense_Mutation p.G496E 0.43 deleterious(0.03) probably_damaging(0.924) TCGA-D3-A3ML-06 5 109117301 109117301 T C MAN2A1 Splice_Site p.X526_splice 0.42 TCGA-D3-A3ML-06 5 11117598 11117598 G A CTNND2 Silent p.I747I 0.45 TCGA-D3-A3ML-06 5 118965458 118965458 G A FAM170A 5'UTR 0.43 TCGA-D3-A3ML-06 5 1212584 1212584 C T SLC6A19 Silent p.I216I 0.42 TCGA-D3-A3ML-06 5 121786528 121786528 G A SNCAIP Silent p.L662L 0.30 TCGA-D3-A3ML-06 5 125919676 125919676 A G ALDH7A1 Missense_Mutation p.V114A 0.44 deleterious(0) probably_damaging(0.994) TCGA-D3-A3ML-06 5 128302143 128302143 G A SLC27A6 Missense_Mutation p.G105R 0.63 deleterious(0) probably_damaging(0.994) TCGA-D3-A3ML-06 5 132159935 132159935 C T SHROOM1 Missense_Mutation p.G473E 0.46 tolerated(0.12) benign(0.024) TCGA-D3-A3ML-06 5 134696215 134696215 G A H2AFY Missense_Mutation p.S187F 0.39 deleterious(0) possibly_damaging(0.83) TCGA-D3-A3ML-06 5 135383107 135383107 C T TGFBI Missense_Mutation p.R257W 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 5 137802956 137802956 C T EGR1 Missense_Mutation p.P273L 0.27 deleterious(0.02) unknown(0) TCGA-D3-A3ML-06 5 13814813 13814813 G A DNAH5 Silent p.F2377F 0.51 TCGA-D3-A3ML-06 5 13839514 13839514 C T DNAH5 Missense_Mutation p.E1945K 0.39 possibly_damaging(0.621) TCGA-D3-A3ML-06 5 13883132 13883132 G A DNAH5 Missense_Mutation p.P1019S 0.46 possibly_damaging(0.641) TCGA-D3-A3ML-06 5 140053886 140053886 C A HARS Nonsense_Mutation p.E496* 0.38 TCGA-D3-A3ML-06 5 140057493 140057493 C T HARS Silent p.K210K 0.29 TCGA-D3-A3ML-06 5 140182973 140182973 G A PCDHA3 Missense_Mutation p.D731N 0.54 deleterious_low_confidence(0.02) benign(0.016) TCGA-D3-A3ML-06 5 140228019 140228019 C T PCDHA9 5'UTR 0.97 TCGA-D3-A3ML-06 5 140249865 140249865 C T PCDHA11 Missense_Mutation p.P393S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-D3-A3ML-06 5 140255514 140255514 C T PCDHA12 Missense_Mutation p.P153S 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.733) TCGA-D3-A3ML-06 5 140264224 140264224 G A PCDHA13 Missense_Mutation p.E791K 0.25 tolerated_low_confidence(0.86) benign(0.005) TCGA-D3-A3ML-06 5 140433458 140433458 G A PCDHB1 Silent p.R801R 0.47 TCGA-D3-A3ML-06 5 140474589 140474589 G A PCDHB2 Missense_Mutation p.G72E 0.47 tolerated_low_confidence(0.08) benign(0.043) TCGA-D3-A3ML-06 5 140481738 140481738 C T PCDHB3 Missense_Mutation p.S502F 0.44 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-D3-A3ML-06 5 140589615 140589615 G A PCDHB12 Missense_Mutation p.G379E 0.46 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A3ML-06 5 140590839 140590839 C T PCDHB12 Missense_Mutation p.P787L 0.29 tolerated_low_confidence(0.07) benign(0.003) TCGA-D3-A3ML-06 5 140725562 140725562 C T PCDHGA3 Silent p.L654L 0.48 TCGA-D3-A3ML-06 5 140737080 140737080 C T PCDHGA4 Silent p.S771S 0.37 TCGA-D3-A3ML-06 5 145442021 145442021 C T SH3RF2 Silent p.S649S 0.43 TCGA-D3-A3ML-06 5 146971233 146971233 C T JAKMIP2 Missense_Mutation p.G810E 0.34 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D3-A3ML-06 5 147286014 147286014 T G C5orf46 Missense_Mutation p.L17F 0.43 deleterious(0.03) unknown(0) TCGA-D3-A3ML-06 5 147498583 147498583 C T SPINK5 Missense_Mutation p.R759C 0.41 tolerated(0.05) possibly_damaging(0.466) TCGA-D3-A3ML-06 5 147695277 147695277 G A SPINK7 3'UTR 0.47 TCGA-D3-A3ML-06 5 148989212 148989212 G A ARHGEF37 Missense_Mutation p.E138K 0.38 tolerated(0.39) benign(0.062) TCGA-D3-A3ML-06 5 149360048 149360048 C T SLC26A2 Missense_Mutation p.H298Y 0.38 tolerated(0.06) benign(0.057) TCGA-D3-A3ML-06 5 149512350 149512350 C T PDGFRB Missense_Mutation p.E364K 0.61 deleterious(0.01) possibly_damaging(0.889) TCGA-D3-A3ML-06 5 154394087 154394087 G A KIF4B Missense_Mutation p.R223K 0.44 tolerated(0.37) benign(0.011) TCGA-D3-A3ML-06 5 156899458 156899458 G A NIPAL4 Silent p.G297G 0.39 TCGA-D3-A3ML-06 5 157065572 157065572 G A SOX30 Missense_Mutation p.P516S 0.39 tolerated(0.1) benign(0.077) TCGA-D3-A3ML-06 5 159840521 159840521 T A SLU7 Missense_Mutation p.N171I 0.37 deleterious(0) probably_damaging(0.989) TCGA-D3-A3ML-06 5 16067851 16067851 C T MARCH11 Missense_Mutation p.R313Q 0.35 tolerated(0.63) benign(0.089) TCGA-D3-A3ML-06 5 167379611 167379611 G A TENM2 Missense_Mutation p.S244N 0.48 tolerated_low_confidence(0.37) benign(0.016) TCGA-D3-A3ML-06 5 167673923 167673923 T C TENM2 Silent p.N1993N 0.49 TCGA-D3-A3ML-06 5 168180963 168180963 C T SLIT3 Missense_Mutation p.G579R 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 5 170395319 170395319 C T RANBP17 Silent p.L550L 0.47 TCGA-D3-A3ML-06 5 176308833 176308833 G A HK3 Silent p.I751I 0.40 TCGA-D3-A3ML-06 5 177634159 177634159 C T HNRNPAB Missense_Mutation p.T201I 0.45 deleterious(0) probably_damaging(0.986) TCGA-D3-A3ML-06 5 31294114 31294114 C T CDH6 Missense_Mutation p.L92F 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 5 31526402 31526402 G A DROSHA Missense_Mutation p.P213L 0.42 deleterious_low_confidence(0.03) benign(0.009) TCGA-D3-A3ML-06 5 31526403 31526403 G A DROSHA Missense_Mutation p.P213S 0.41 tolerated_low_confidence(0.07) benign(0.009) TCGA-D3-A3ML-06 5 35793320 35793320 C T SPEF2 Silent p.F1538F 0.45 TCGA-D3-A3ML-06 5 35876138 35876138 G A IL7R Silent p.R310R 0.39 TCGA-D3-A3ML-06 5 36049417 36049417 G A UGT3A2 Silent p.F139F 0.42 TCGA-D3-A3ML-06 5 36975988 36975988 A G NIPBL Missense_Mutation p.K327E 0.60 tolerated_low_confidence(0.25) benign(0.396) TCGA-D3-A3ML-06 5 38409183 38409183 C T EGFLAM Silent p.I442I 0.53 TCGA-D3-A3ML-06 5 38511923 38511923 C T LIFR Nonsense_Mutation p.W235* 0.58 TCGA-D3-A3ML-06 5 38869186 38869186 A G OSMR Missense_Mutation p.T14A 0.47 tolerated(1) unknown(0) TCGA-D3-A3ML-06 5 41061770 41061770 G A MROH2B Missense_Mutation p.P173S 0.51 tolerated(0.08) probably_damaging(0.943) TCGA-D3-A3ML-06 5 41149541 41149541 C T C6 Missense_Mutation p.D809N 0.46 tolerated(0.51) benign(0.003) TCGA-D3-A3ML-06 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.41 TCGA-D3-A3ML-06 5 43388547 43388547 C T CCL28 Silent p.T32T 0.57 TCGA-D3-A3ML-06 5 50056185 50056185 G A PARP8 Missense_Mutation p.E112K 0.40 deleterious_low_confidence(0.03) benign(0.427) TCGA-D3-A3ML-06 5 66410038 66410038 C T MAST4 Missense_Mutation p.P528S 0.53 probably_damaging(0.937) TCGA-D3-A3ML-06 5 70818163 70818163 G A BDP1 Missense_Mutation p.R1680K 0.43 tolerated(0.19) probably_damaging(0.987) TCGA-D3-A3ML-06 5 71489744 71489744 C T MAP1B Silent p.L188L 0.42 TCGA-D3-A3ML-06 5 76129240 76129240 C T F2RL1 Nonsense_Mutation p.R270* 0.50 TCGA-D3-A3ML-06 5 80756922 80756922 C T SSBP2 Missense_Mutation p.M213I 0.38 deleterious(0.04) benign(0.14) TCGA-D3-A3ML-06 5 89701595 89701595 A G CETN3 Missense_Mutation p.F59L 0.44 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A3ML-06 5 89968505 89968505 G A GPR98 Missense_Mutation p.G1632E 0.39 probably_damaging(0.999) TCGA-D3-A3ML-06 5 90020985 90020985 G A GPR98 Missense_Mutation p.R3330K 0.62 benign(0) TCGA-D3-A3ML-06 5 90103416 90103416 C T GPR98 Intron 0.50 TCGA-D3-A3ML-06 5 90107120 90107120 C T GPR98 Missense_Mutation p.T5348I 0.36 benign(0.003) TCGA-D3-A3ML-06 5 93856421 93856421 G A KIAA0825 Missense_Mutation p.L168F 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 5 94927239 94927239 G A ARSK Missense_Mutation p.V336I 0.43 tolerated(0.12) benign(0.152) TCGA-D3-A3ML-06 6 107111024 107111024 C A QRSL1 Missense_Mutation p.Q444K 0.07 tolerated(0.52) possibly_damaging(0.685) TCGA-D3-A3ML-06 6 107361380 107361380 T C C6orf203 Missense_Mutation p.V144A 0.92 deleterious(0.03) benign(0.165) TCGA-D3-A3ML-06 6 107780313 107780313 G T PDSS2 Silent p.I59I 0.07 TCGA-D3-A3ML-06 6 11104843 11104843 C T ERVFRD-1 Missense_Mutation p.R234Q 0.58 tolerated(0.37) probably_damaging(0.921) TCGA-D3-A3ML-06 6 117128082 117128082 C T GPRC6A Silent p.L262L 0.89 TCGA-D3-A3ML-06 6 117250021 117250021 C T RFX6 Missense_Mutation p.P833L 0.90 deleterious_low_confidence(0.01) benign(0.044) TCGA-D3-A3ML-06 6 119509608 119509608 C T MAN1A1 Missense_Mutation p.D561N 0.93 tolerated(0.08) benign(0.054) TCGA-D3-A3ML-06 6 128134578 128134578 C T THEMIS Missense_Mutation p.G403E 0.94 deleterious(0.02) probably_damaging(0.959) TCGA-D3-A3ML-06 6 129748963 129748963 C T LAMA2 Missense_Mutation p.L1978F 0.86 deleterious(0.02) benign(0.167) TCGA-D3-A3ML-06 6 129802559 129802559 G A LAMA2 Missense_Mutation p.R2575K 0.88 tolerated(0.77) benign(0.026) TCGA-D3-A3ML-06 6 130505695 130505695 G A SAMD3 Missense_Mutation p.P153S 0.96 deleterious(0) probably_damaging(0.979) TCGA-D3-A3ML-06 6 136597581 136597581 G A BCLAF1 Missense_Mutation p.S361L 0.34 tolerated(0.11) benign(0) TCGA-D3-A3ML-06 6 136599171 136599171 C T BCLAF1 Missense_Mutation p.R283Q 0.28 tolerated(0.17) benign(0.417) TCGA-D3-A3ML-06 6 137332423 137332423 G A IL20RA Missense_Mutation p.P131S 0.78 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 6 155749975 155749975 G A NOX3 Silent p.A366A 0.92 TCGA-D3-A3ML-06 6 160514839 160514839 A G IGF2R Intron 1.00 TCGA-D3-A3ML-06 6 161513140 161513140 G A MAP3K4 Silent p.L1078L 0.92 TCGA-D3-A3ML-06 6 167570909 167570909 G A GPR31 Silent p.L137L 1.00 TCGA-D3-A3ML-06 6 167754579 167754579 T C TTLL2 Silent p.C397C 0.89 TCGA-D3-A3ML-06 6 168319418 168319418 C T MLLT4 Missense_Mutation p.L898F 0.76 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A3ML-06 6 17292073 17292073 C T RBM24 Missense_Mutation p.S145F 0.57 tolerated(0.7) benign(0.004) TCGA-D3-A3ML-06 6 18122048 18122048 G A NHLRC1 Missense_Mutation p.P264S 0.66 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 6 20781484 20781484 C T CDKAL1 Missense_Mutation p.S209F 0.76 deleterious(0) possibly_damaging(0.516) TCGA-D3-A3ML-06 6 25605104 25605104 C T LRRC16A Missense_Mutation p.S1206L 0.47 tolerated_low_confidence(0.69) benign(0) TCGA-D3-A3ML-06 6 25661866 25661866 G A SCGN Missense_Mutation p.M80I 0.29 tolerated(1) benign(0.001) TCGA-D3-A3ML-06 6 25689424 25689424 C T SCGN Silent p.F184F 0.33 TCGA-D3-A3ML-06 6 28543645 28543645 G A SCAND3 Silent p.I279I 0.24 TCGA-D3-A3ML-06 6 29556620 29556620 G A OR2H2 Missense_Mutation p.R300K 0.63 tolerated(0.99) benign(0.002) TCGA-D3-A3ML-06 6 31601157 31601157 C G PRRC2A Missense_Mutation p.R1441G 0.24 unknown(0) TCGA-D3-A3ML-06 6 31864784 31864784 G A EHMT2 Intron 0.57 TCGA-D3-A3ML-06 6 32008221 32008221 G A CYP21A2 Silent p.L326L 0.38 TCGA-D3-A3ML-06 6 32012985 32012985 C G TNXB Silent p.S4S 0.24 TCGA-D3-A3ML-06 6 33232154 33232154 G A VPS52 Silent p.H507H 0.38 TCGA-D3-A3ML-06 6 35213079 35213079 G A SCUBE3 Missense_Mutation p.A826T 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A3ML-06 6 38840840 38840840 G A DNAH8 Missense_Mutation p.E2249K 0.59 possibly_damaging(0.679) TCGA-D3-A3ML-06 6 41318505 41318505 C T NCR2 Missense_Mutation p.P245L 0.65 tolerated_low_confidence(1) benign(0) TCGA-D3-A3ML-06 6 41558049 41558049 C T FOXP4 Silent p.V466V 0.55 TCGA-D3-A3ML-06 6 41558050 41558050 C T FOXP4 Missense_Mutation p.R467W 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 6 42176656 42176656 A C MRPS10 Missense_Mutation p.D154E 0.59 tolerated(0.06) benign(0.314) TCGA-D3-A3ML-06 6 43273599 43273599 C G CRIP3 Missense_Mutation p.D190H 0.31 deleterious(0.03) benign(0.011) TCGA-D3-A3ML-06 6 44151446 44151446 C T CAPN11 Silent p.F713F 0.64 TCGA-D3-A3ML-06 6 46830833 46830833 C T GPR116 Missense_Mutation p.G664E 0.35 tolerated(0.61) benign(0.004) TCGA-D3-A3ML-06 6 49696524 49696524 C T CRISP3 Silent p.L242L 0.27 TCGA-D3-A3ML-06 6 4995293 4995293 G A RPP40 3'UTR 0.30 TCGA-D3-A3ML-06 6 55119985 55119985 C T HCRTR2 Missense_Mutation p.R152W 0.66 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 6 55192355 55192355 G A GFRAL Translation_Start_Site p.M1? 0.32 tolerated(0.05) benign(0.005) TCGA-D3-A3ML-06 6 56334926 56334926 C T DST Silent p.E4869E 0.27 TCGA-D3-A3ML-06 6 56846592 56846592 G A BEND6 5'UTR 0.29 TCGA-D3-A3ML-06 6 57398298 57398298 G A PRIM2 Missense_Mutation p.G334E 0.13 deleterious(0) probably_damaging(0.994) TCGA-D3-A3ML-06 6 62688024 62688024 C T KHDRBS2 Missense_Mutation p.A144T 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A3ML-06 6 7230383 7230383 C T RREB1 Missense_Mutation p.A684V 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 6 7230384 7230384 C T RREB1 Silent p.A684A 0.29 TCGA-D3-A3ML-06 6 72596859 72596859 G A RIMS1 Missense_Mutation p.E45K 0.93 tolerated(0.87) benign(0.118) TCGA-D3-A3ML-06 6 73751701 73751701 C T KCNQ5 Nonsense_Mutation p.R178* 0.95 TCGA-D3-A3ML-06 6 75827197 75827197 T G COL12A1 Missense_Mutation p.K2474Q 0.87 possibly_damaging(0.697) TCGA-D3-A3ML-06 6 7584862 7584862 C T DSP Missense_Mutation p.S2456L 0.26 probably_damaging(0.989) TCGA-D3-A3ML-06 6 76023011 76023011 G A FILIP1 Missense_Mutation p.P846L 0.95 deleterious(0.02) probably_damaging(1) TCGA-D3-A3ML-06 6 79668244 79668244 G A PHIP Missense_Mutation p.P1244S 0.85 tolerated(0.39) possibly_damaging(0.864) TCGA-D3-A3ML-06 6 79668245 79668245 G A PHIP Silent p.S1243S 0.85 TCGA-D3-A3ML-06 6 84574020 84574020 A T CYB5R4 Nonsense_Mutation p.K68* 0.91 TCGA-D3-A3ML-06 6 94120174 94120174 A C EPHA7 Intron 0.90 TCGA-D3-A3ML-06 7 100085959 100085959 C T NYAP1 Silent p.D205D 0.63 TCGA-D3-A3ML-06 7 100730827 100730827 C T TRIM56 Silent p.F78F 0.28 TCGA-D3-A3ML-06 7 103243892 103243892 G A RELN Silent p.A1064A 0.60 TCGA-D3-A3ML-06 7 107002835 107002835 G A COG5 Missense_Mutation p.P320L 0.53 tolerated(0.07) benign(0.155) TCGA-D3-A3ML-06 7 107002836 107002836 G A COG5 Missense_Mutation p.P320S 0.49 tolerated(0.1) benign(0.236) TCGA-D3-A3ML-06 7 11418950 11418950 C T THSD7A Intron 0.21 TCGA-D3-A3ML-06 7 116418932 116418932 G A MET Missense_Mutation p.R1166Q 0.28 deleterious(0.03) probably_damaging(0.984) TCGA-D3-A3ML-06 7 116436072 116436072 A G MET Missense_Mutation p.Y1374C 0.62 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 7 116862971 116862971 C T ST7 Silent p.F565F 0.59 TCGA-D3-A3ML-06 7 117149095 117149095 G A CFTR Missense_Mutation p.D58N 0.23 deleterious(0.02) benign(0.047) TCGA-D3-A3ML-06 7 122078450 122078450 G A CADPS2 Silent p.L807L 0.35 TCGA-D3-A3ML-06 7 122261735 122261735 C T CADPS2 Missense_Mutation p.E302K 0.27 tolerated(0.06) probably_damaging(0.945) TCGA-D3-A3ML-06 7 122635677 122635677 G A TAS2R16 Silent p.I4I 0.53 TCGA-D3-A3ML-06 7 126542671 126542671 C T GRM8 Missense_Mutation p.E361K 0.53 deleterious(0) benign(0.388) TCGA-D3-A3ML-06 7 131844304 131844304 C T PLXNA4 Missense_Mutation p.E1530K 0.63 deleterious(0.01) possibly_damaging(0.85) TCGA-D3-A3ML-06 7 133948779 133948779 G A LRGUK 3'UTR 0.27 TCGA-D3-A3ML-06 7 135272633 135272633 C T NUP205 Missense_Mutation p.H456Y 0.36 tolerated(0.08) benign(0.183) TCGA-D3-A3ML-06 7 137341217 137341217 C T DGKI Missense_Mutation p.E226K 0.55 deleterious(0.02) benign(0.445) TCGA-D3-A3ML-06 7 139754527 139754527 G A PARP12 Missense_Mutation p.T266I 0.57 deleterious(0.05) benign(0.104) TCGA-D3-A3ML-06 7 141537835 141537835 G A PRSS37 Silent p.I85I 0.64 TCGA-D3-A3ML-06 7 141672477 141672477 C T TAS2R38 3'UTR 0.33 TCGA-D3-A3ML-06 7 141722126 141722126 C T MGAM Nonsense_Mutation p.R257* 0.27 TCGA-D3-A3ML-06 7 141750558 141750558 A T MGAM Missense_Mutation p.N900I 0.30 deleterious(0.03) benign(0.034) TCGA-D3-A3ML-06 7 142168892 142168892 C T TRBV5-4 5'UTR 0.47 TCGA-D3-A3ML-06 7 142626632 142626632 C T TRPV5 Silent p.V126V 0.55 TCGA-D3-A3ML-06 7 142654936 142654936 G A KEL Missense_Mutation p.S217F 0.27 tolerated(0.12) benign(0.005) TCGA-D3-A3ML-06 7 143792319 143792319 G A OR2A12 Missense_Mutation p.G40E 0.26 deleterious(0.02) possibly_damaging(0.621) TCGA-D3-A3ML-06 7 143793076 143793076 G A OR2A12 Silent p.R292R 0.26 TCGA-D3-A3ML-06 7 143826719 143826719 G A OR2A14 Missense_Mutation p.E172K 0.15 tolerated(0.43) benign(0.016) TCGA-D3-A3ML-06 7 144063504 144063504 C T ARHGEF5 Missense_Mutation p.R1071W 0.19 deleterious(0) probably_damaging(0.996) TCGA-D3-A3ML-06 7 144098466 144098466 G A NOBOX Silent p.L173L 0.25 TCGA-D3-A3ML-06 7 14613939 14613939 G A DGKB Silent p.I557I 0.56 TCGA-D3-A3ML-06 7 148526910 148526910 G A EZH2 Missense_Mutation p.P132S 0.34 deleterious(0) possibly_damaging(0.566) TCGA-D3-A3ML-06 7 148947559 148947559 G A ZNF212 Missense_Mutation p.E112K 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A3ML-06 7 149523330 149523330 G A SSPO RNA 0.68 TCGA-D3-A3ML-06 7 150217580 150217580 C T GIMAP7 Missense_Mutation p.T173I 0.59 tolerated(0.06) benign(0.043) TCGA-D3-A3ML-06 7 150325421 150325421 T G GIMAP6 Missense_Mutation p.K89Q 0.66 tolerated(0.09) benign(0.354) TCGA-D3-A3ML-06 7 150556111 150556111 G A AOC1 Missense_Mutation p.E611K 0.70 tolerated(0.19) benign(0.04) TCGA-D3-A3ML-06 7 150751372 150751372 G A CDK5 Missense_Mutation p.P240L 0.21 deleterious(0.03) benign(0.133) TCGA-D3-A3ML-06 7 150776715 150776715 C T FASTK Missense_Mutation p.G126E 0.32 tolerated_low_confidence(0.17) benign(0.358) TCGA-D3-A3ML-06 7 151945102 151945102 G A KMT2C Missense_Mutation p.S806F 0.04 possibly_damaging(0.498) TCGA-D3-A3ML-06 7 155504079 155504079 G A RBM33 Silent p.V377V 0.33 TCGA-D3-A3ML-06 7 157926745 157926745 G A PTPRN2 Missense_Mutation p.R394C 0.60 deleterious(0.01) possibly_damaging(0.642) TCGA-D3-A3ML-06 7 16841407 16841407 G A AGR2 Missense_Mutation p.P5L 0.49 tolerated_low_confidence(0.65) benign(0) TCGA-D3-A3ML-06 7 23821122 23821122 C T STK31 Missense_Mutation p.H684Y 0.70 deleterious(0.05) benign(0.002) TCGA-D3-A3ML-06 7 31792926 31792926 C T PDE1C 3'UTR 0.64 TCGA-D3-A3ML-06 7 31876891 31876891 G A PDE1C Missense_Mutation p.S429F 0.65 deleterious(0) probably_damaging(0.998) TCGA-D3-A3ML-06 7 32091193 32091193 C T PDE1C Intron 0.58 TCGA-D3-A3ML-06 7 36927266 36927266 T A ELMO1 Missense_Mutation p.E538V 0.23 deleterious(0.01) benign(0.062) TCGA-D3-A3ML-06 7 36927268 36927268 C T ELMO1 Silent p.K537K 0.23 TCGA-D3-A3ML-06 7 37780794 37780794 G A GPR141 Missense_Mutation p.E267K 0.61 deleterious(0) probably_damaging(0.994) TCGA-D3-A3ML-06 7 37923931 37923931 G A NME8 Missense_Mutation p.E341K 0.64 deleterious(0.03) probably_damaging(0.959) TCGA-D3-A3ML-06 7 38389397 38389397 G A TRGV5 Missense_Mutation p.A10V 0.23 tolerated(0.55) benign(0.152) TCGA-D3-A3ML-06 7 48083131 48083131 T C C7orf57 Missense_Mutation p.S99P 0.18 deleterious(0.02) possibly_damaging(0.898) TCGA-D3-A3ML-06 7 51203899 51203899 G A COBL Missense_Mutation p.P305S 0.33 tolerated(0.06) probably_damaging(1) TCGA-D3-A3ML-06 7 62752678 62752678 G A ZNF733P RNA 0.27 TCGA-D3-A3ML-06 7 64292300 64292300 T G ZNF138 Missense_Mutation p.V201G 0.59 deleterious(0) benign(0.007) TCGA-D3-A3ML-06 7 72873955 72873955 G A BAZ1B Missense_Mutation p.P1115S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3ML-06 7 73150988 73150988 G A ABHD11 Silent p.F283F 0.56 TCGA-D3-A3ML-06 7 76062960 76062960 C T ZP3 Missense_Mutation p.H237Y 0.31 tolerated(0.07) benign(0.14) TCGA-D3-A3ML-06 7 7628141 7628141 G A MIOS Missense_Mutation p.V611I 0.55 tolerated(0.1) benign(0.011) TCGA-D3-A3ML-06 7 7628142 7628142 T A MIOS Missense_Mutation p.V611D 0.55 deleterious(0) possibly_damaging(0.776) TCGA-D3-A3ML-06 7 81392143 81392143 G A HGF Missense_Mutation p.S45L 0.64 tolerated(0.22) possibly_damaging(0.662) TCGA-D3-A3ML-06 7 82538233 82538233 C T PCLO Missense_Mutation p.R4466K 0.67 unknown(0) TCGA-D3-A3ML-06 7 92978050 92978050 C T CCDC132 Silent p.F745F 0.25 TCGA-D3-A3ML-06 7 939098 939098 G A ADAP1 Silent p.F275F 0.53 TCGA-D3-A3ML-06 8 101733713 101733713 C T PABPC1 Silent p.P33P 0.75 TCGA-D3-A3ML-06 8 103311700 103311700 G A UBR5 Missense_Mutation p.P1061L 0.28 tolerated(0.15) probably_damaging(0.991) TCGA-D3-A3ML-06 8 103311701 103311701 G A UBR5 Missense_Mutation p.P1061S 0.27 tolerated(0.52) probably_damaging(0.986) TCGA-D3-A3ML-06 8 105405219 105405219 C T DPYS Silent p.R412R 0.26 TCGA-D3-A3ML-06 8 105511567 105511567 A G LRP12 Silent p.G151G 0.22 TCGA-D3-A3ML-06 8 10583609 10583609 G C SOX7 Missense_Mutation p.S321C 0.39 tolerated(0.19) probably_damaging(0.999) TCGA-D3-A3ML-06 8 106811101 106811101 C T ZFPM2 Silent p.L297L 0.69 TCGA-D3-A3ML-06 8 107763239 107763239 C T OXR1 3'UTR 0.13 TCGA-D3-A3ML-06 8 107781949 107781949 G A ABRA Missense_Mutation p.P157L 0.42 deleterious(0) possibly_damaging(0.867) TCGA-D3-A3ML-06 8 110495297 110495297 C T PKHD1L1 Missense_Mutation p.S3180F 0.38 deleterious(0) probably_damaging(0.962) TCGA-D3-A3ML-06 8 110980536 110980536 G A KCNV1 Silent p.N428N 0.80 TCGA-D3-A3ML-06 8 113249575 113249575 G A CSMD3 Missense_Mutation p.P3491S 0.19 deleterious(0) possibly_damaging(0.496) TCGA-D3-A3ML-06 8 119209876 119209876 G A SAMD12 3'UTR 0.45 TCGA-D3-A3ML-06 8 120233930 120233930 C T MAL2 Missense_Mutation p.S79L 0.45 deleterious(0) probably_damaging(0.994) TCGA-D3-A3ML-06 8 121518977 121518977 T C MTBP Silent p.L587L 0.27 TCGA-D3-A3ML-06 8 125094555 125094555 C T FER1L6 Missense_Mutation p.P1416L 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 8 125113392 125113392 C T FER1L6 Silent p.S1646S 0.23 TCGA-D3-A3ML-06 8 131955676 131955676 T C ADCY8 Missense_Mutation p.N425S 0.74 tolerated(0.83) probably_damaging(0.963) TCGA-D3-A3ML-06 8 139606311 139606311 G A COL22A1 Missense_Mutation p.R1522C 0.27 unknown(0) TCGA-D3-A3ML-06 8 139703118 139703118 C T COL22A1 Splice_Site p.X919_splice 0.42 TCGA-D3-A3ML-06 8 139788237 139788237 C T COL22A1 Missense_Mutation p.R592Q 0.24 unknown(0) TCGA-D3-A3ML-06 8 144886747 144886747 G A SCRIB Silent p.Y1000Y 0.27 TCGA-D3-A3ML-06 8 144998507 144998507 C A PLEC Nonsense_Mutation p.E2001* 0.08 TCGA-D3-A3ML-06 8 22475237 22475237 C T CCAR2 Silent p.V673V 0.44 TCGA-D3-A3ML-06 8 22960634 22960634 C T TNFRSF10C 5'UTR 0.27 TCGA-D3-A3ML-06 8 24775889 24775889 G A NEFM Missense_Mutation p.E841K 0.33 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-D3-A3ML-06 8 25708206 25708206 G A EBF2 Missense_Mutation p.P534S 0.36 tolerated_low_confidence(1) probably_damaging(0.968) TCGA-D3-A3ML-06 8 2796204 2796204 G A CSMD1 Missense_Mutation p.S3533L 0.21 probably_damaging(0.996) TCGA-D3-A3ML-06 8 2820757 2820757 G A CSMD1 Silent p.I3147I 0.51 TCGA-D3-A3ML-06 8 28595036 28595036 G A EXTL3 Silent p.R759R 0.45 TCGA-D3-A3ML-06 8 30702822 30702822 T C TEX15 Missense_Mutation p.S1238G 0.41 tolerated(0.07) benign(0.306) TCGA-D3-A3ML-06 8 3165229 3165229 C T CSMD1 Missense_Mutation p.G1313E 0.46 probably_damaging(0.96) TCGA-D3-A3ML-06 8 3224756 3224756 G A CSMD1 Silent p.I971I 0.33 TCGA-D3-A3ML-06 8 35541067 35541067 G A UNC5D Silent p.V191V 0.44 TCGA-D3-A3ML-06 8 35583934 35583934 C T UNC5D Missense_Mutation p.P523L 0.39 tolerated(0.42) benign(0.008) TCGA-D3-A3ML-06 8 38105170 38105170 A G DDHD2 Intron 0.29 TCGA-D3-A3ML-06 8 38275833 38275833 C A FGFR1 Missense_Mutation p.R479L 0.43 tolerated(0.07) probably_damaging(0.982) TCGA-D3-A3ML-06 8 39872825 39872825 G A IDO2 Missense_Mutation p.D323N 0.40 tolerated(0.12) benign(0.139) TCGA-D3-A3ML-06 8 43172526 43172526 G A POTEA RNA 0.41 TCGA-D3-A3ML-06 8 52336291 52336291 C T PXDNL Missense_Mutation p.E547K 0.50 deleterious(0.02) benign(0.21) TCGA-D3-A3ML-06 8 53454956 53454956 G A FAM150A Silent p.F80F 0.27 TCGA-D3-A3ML-06 8 53580613 53580613 G A RB1CC1 Nonsense_Mutation p.R381* 0.51 TCGA-D3-A3ML-06 8 55537744 55537744 C T RP1 Silent p.I434I 0.50 TCGA-D3-A3ML-06 8 55540500 55540500 C T RP1 Missense_Mutation p.T1353I 0.37 tolerated(0.25) benign(0.004) TCGA-D3-A3ML-06 8 55542347 55542347 G A RP1 Missense_Mutation p.E1969K 0.40 deleterious(0.01) benign(0.05) TCGA-D3-A3ML-06 8 62212831 62212831 G A CLVS1 Missense_Mutation p.D149N 0.45 tolerated(0.08) benign(0.393) TCGA-D3-A3ML-06 8 67357610 67357610 G A ADHFE1 Missense_Mutation p.G171R 0.23 deleterious(0) probably_damaging(0.99) TCGA-D3-A3ML-06 8 6793501 6793501 G A DEFA4 3'UTR 0.46 TCGA-D3-A3ML-06 8 68423887 68423887 G A CPA6 Silent p.V107V 0.64 TCGA-D3-A3ML-06 8 68984731 68984731 G A PREX2 Missense_Mutation p.D499N 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A3ML-06 8 69020414 69020414 A G PREX2 Missense_Mutation p.H929R 0.17 tolerated(0.15) probably_damaging(0.983) TCGA-D3-A3ML-06 8 86121546 86121546 C T E2F5 Missense_Mutation p.P262L 0.75 tolerated(0.08) benign(0.007) TCGA-D3-A3ML-06 8 87241983 87241983 G A SLC7A13 Missense_Mutation p.S175F 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A3ML-06 8 87666250 87666250 G A CNGB3 Missense_Mutation p.T298I 0.15 tolerated(0.22) benign(0.012) TCGA-D3-A3ML-06 8 88365902 88365902 G A CNBD1 Silent p.K397K 0.75 TCGA-D3-A3ML-06 8 95523504 95523504 G A KIAA1429 Missense_Mutation p.S1100F 0.31 deleterious(0.01) possibly_damaging(0.682) TCGA-D3-A3ML-06 9 100367789 100367789 C T TSTD2 Silent p.R363R 0.30 TCGA-D3-A3ML-06 9 104124751 104124751 G A BAAT Missense_Mutation p.L406F 0.63 tolerated(1) benign(0.443) TCGA-D3-A3ML-06 9 104170614 104170614 T C ZNF189 Silent p.S188S 0.63 TCGA-D3-A3ML-06 9 107361417 107361417 G A OR13C5 Missense_Mutation p.S93F 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A3ML-06 9 107367161 107367161 T C OR13C2 Missense_Mutation p.I250V 0.75 tolerated(0.34) benign(0.139) TCGA-D3-A3ML-06 9 107618209 107618209 A G ABCA1 Intron 0.33 TCGA-D3-A3ML-06 9 108370097 108370097 C T FKTN Intron 0.62 TCGA-D3-A3ML-06 9 109687542 109687542 A G ZNF462 Missense_Mutation p.H450R 0.64 possibly_damaging(0.537) TCGA-D3-A3ML-06 9 113170152 113170152 G A SVEP1 Silent p.A2576A 0.55 TCGA-D3-A3ML-06 9 113703853 113703853 T C LPAR1 Missense_Mutation p.N214S 0.62 tolerated(0.15) benign(0.426) TCGA-D3-A3ML-06 9 121929535 121929535 G A BRINP1 Missense_Mutation p.R705C 0.36 deleterious(0) probably_damaging(0.973) TCGA-D3-A3ML-06 9 121930445 121930445 C T BRINP1 Silent p.G401G 0.28 TCGA-D3-A3ML-06 9 121930446 121930446 C T BRINP1 Missense_Mutation p.G401E 0.26 tolerated(0.35) probably_damaging(0.994) TCGA-D3-A3ML-06 9 123914909 123914909 G T CNTRL Missense_Mutation p.K1370N 0.22 possibly_damaging(0.843) TCGA-D3-A3ML-06 9 125288862 125288862 G A OR1N1 Silent p.S237S 0.27 TCGA-D3-A3ML-06 9 125316063 125316063 C T OR1N2 Silent p.A205A 0.32 TCGA-D3-A3ML-06 9 125486885 125486885 C T OR1L4 Missense_Mutation p.A206V 0.16 tolerated(0.5) benign(0.181) TCGA-D3-A3ML-06 9 125551448 125551448 C T OR5C1 Silent p.S79S 0.31 TCGA-D3-A3ML-06 9 125620264 125620264 G A RC3H2 Missense_Mutation p.P798S 0.56 tolerated(0.12) benign(0.09) TCGA-D3-A3ML-06 9 127570175 127570175 G A OLFML2A Silent p.R428R 0.61 TCGA-D3-A3ML-06 9 129851287 129851287 G A ANGPTL2 Silent p.F471F 0.26 TCGA-D3-A3ML-06 9 130169566 130169566 C T SLC2A8 3'UTR 0.22 TCGA-D3-A3ML-06 9 130493174 130493174 G A TTC16 Silent p.K704K 0.29 TCGA-D3-A3ML-06 9 130943047 130943047 G A CIZ1 Missense_Mutation p.P212L 0.27 deleterious(0.01) possibly_damaging(0.587) TCGA-D3-A3ML-06 9 131669900 131669900 C T LRRC8A Silent p.L153L 0.36 TCGA-D3-A3ML-06 9 132632120 132632120 G T USP20 Missense_Mutation p.R521L 0.51 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A3ML-06 9 134393831 134393831 G A POMT1 Splice_Site p.X447_splice 0.29 TCGA-D3-A3ML-06 9 136340104 136340104 G A SLC2A6 Silent p.F302F 0.53 TCGA-D3-A3ML-06 9 137630613 137630613 A G COL5A1 Missense_Mutation p.T485A 0.18 probably_damaging(0.994) TCGA-D3-A3ML-06 9 138377185 138377185 C T PPP1R26 Missense_Mutation p.R277W 0.68 deleterious(0) probably_damaging(0.942) TCGA-D3-A3ML-06 9 139272290 139272290 G A SNAPC4 Missense_Mutation p.S1330F 0.30 deleterious(0.01) possibly_damaging(0.855) TCGA-D3-A3ML-06 9 14842575 14842575 C T FREM1 Missense_Mutation p.D493N 0.93 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 9 21239343 21239343 C T IFNA14 3'UTR 0.87 TCGA-D3-A3ML-06 9 33442762 33442762 G A AQP3 Intron 0.47 TCGA-D3-A3ML-06 9 35044201 35044201 G A C9orf131 Missense_Mutation p.M525I 0.47 tolerated(0.52) benign(0) TCGA-D3-A3ML-06 9 35094309 35094309 G A PIGO Missense_Mutation p.P187S 0.38 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A3ML-06 9 35094310 35094310 G A PIGO Silent p.F186F 0.38 TCGA-D3-A3ML-06 9 71628163 71628163 G A PRKACG Silent p.F282F 0.34 TCGA-D3-A3ML-06 9 738454 738454 A G KANK1 Missense_Mutation p.Y1168C 0.93 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 9 74842970 74842970 G A GDA Intron 0.66 TCGA-D3-A3ML-06 9 77245241 77245241 C T RORB Silent p.S17S 0.63 TCGA-D3-A3ML-06 9 77280476 77280476 G A RORB Missense_Mutation p.G322E 0.33 deleterious(0.05) possibly_damaging(0.872) TCGA-D3-A3ML-06 9 78796371 78796371 G A PCSK5 Silent p.R687R 0.35 TCGA-D3-A3ML-06 9 79324252 79324252 C T PRUNE2 Missense_Mutation p.G980R 0.35 deleterious(0.03) benign(0.172) TCGA-D3-A3ML-06 9 79324437 79324437 G A PRUNE2 Missense_Mutation p.S918F 0.70 deleterious(0) probably_damaging(0.979) TCGA-D3-A3ML-06 9 79325794 79325794 G A PRUNE2 Missense_Mutation p.L466F 0.67 tolerated(1) benign(0.001) TCGA-D3-A3ML-06 9 80336420 80336420 C T GNAQ Missense_Mutation p.R300K 0.29 tolerated(0.44) benign(0.001) TCGA-D3-A3ML-06 9 8338946 8338946 C T PTPRD Silent p.R1785R 0.88 TCGA-D3-A3ML-06 9 85863182 85863182 G A FRMD3 Missense_Mutation p.S482L 0.27 tolerated(0.18) probably_damaging(0.994) TCGA-D3-A3ML-06 9 86399665 86399665 G A GKAP1 Missense_Mutation p.P176L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 9 86399666 86399666 G A GKAP1 Missense_Mutation p.P176S 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 9 86920218 86920218 C T SLC28A3 Silent p.R95R 0.61 TCGA-D3-A3ML-06 9 96278526 96278526 G A FAM120A Missense_Mutation p.D465N 0.25 tolerated(0.23) possibly_damaging(0.49) TCGA-D3-A3ML-06 9 97321200 97321200 G A FBP2 3'UTR 0.60 TCGA-D3-A3ML-06 X 105449833 105449833 G T MUM1L1 Missense_Mutation p.K136N 0.89 deleterious(0.01) possibly_damaging(0.467) TCGA-D3-A3ML-06 X 110644527 110644527 G A DCX Silent p.F213F 0.92 TCGA-D3-A3ML-06 X 125299644 125299644 C T DCAF12L2 Silent p.T88T 0.94 TCGA-D3-A3ML-06 X 12712557 12712557 A C FRMPD4 Missense_Mutation p.E306A 0.87 deleterious(0) probably_damaging(0.997) TCGA-D3-A3ML-06 X 128880634 128880634 T A XPNPEP2 Missense_Mutation p.F156Y 0.96 deleterious(0.04) possibly_damaging(0.811) TCGA-D3-A3ML-06 X 130419216 130419216 G A IGSF1 Missense_Mutation p.H202Y 0.90 tolerated(0.56) benign(0.012) TCGA-D3-A3ML-06 X 13624584 13624584 C T EGFL6 Missense_Mutation p.H203Y 0.96 deleterious(0.01) possibly_damaging(0.8) TCGA-D3-A3ML-06 X 140995378 140995378 C T MAGEC1 Missense_Mutation p.P730S 0.95 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-D3-A3ML-06 X 140996304 140996304 G A MAGEC1 Silent p.G1038G 0.96 TCGA-D3-A3ML-06 X 150348764 150348764 C T GPR50 Silent p.L237L 0.95 TCGA-D3-A3ML-06 X 150868507 150868507 G A PRRG3 Missense_Mutation p.R16Q 0.98 deleterious(0.04) benign(0.045) TCGA-D3-A3ML-06 X 152159273 152159273 T C PNMA5 Silent p.K290K 0.92 TCGA-D3-A3ML-06 X 15268625 15268625 G A ASB9 Silent p.S165S 0.96 TCGA-D3-A3ML-06 X 3229524 3229524 C T MXRA5 Missense_Mutation p.M2240I 0.91 deleterious(0.05) possibly_damaging(0.833) TCGA-D3-A3ML-06 X 38240595 38240595 G A OTC Missense_Mutation p.G100D 0.88 deleterious(0) probably_damaging(0.991) TCGA-D3-A3ML-06 X 52896162 52896162 C T XAGE3 Translation_Start_Site p.M1? 0.92 deleterious(0.03) benign(0) TCGA-D3-A3ML-06 X 62875522 62875522 G A ARHGEF9 Silent p.F384F 0.99 TCGA-D3-A3ML-06 X 69420275 69420275 G A DGAT2L6 Nonsense_Mutation p.W146* 0.93 TCGA-D3-A3ML-06 X 71359492 71359492 G A NHSL2 Silent p.E698E 0.98 TCGA-D3-A3ML-06 X 73066500 73066500 G A XIST RNA 0.90 TCGA-D3-A3ML-06 X 76709696 76709696 G A FGF16 Missense_Mutation p.G17E 1.00 probably_damaging(1) TCGA-D3-A3ML-06 X 78426877 78426877 C T GPR174 Missense_Mutation p.R125C 0.93 tolerated(0.07) possibly_damaging(0.863) TCGA-D3-A3ML-06 X 79698897 79698897 C T FAM46D Missense_Mutation p.H287Y 1.00 deleterious(0) probably_damaging(1) TCGA-D3-A3ML-06 Y 16941617 16941617 C T NLGN4Y Silent p.F273F 1.00 TCGA-D3-A3MO-06 10 105005757 105005757 G A RPEL1 Missense_Mutation p.A2T 0.65 deleterious(0) benign(0.201) TCGA-D3-A3MO-06 10 106118234 106118234 G A CCDC147 Missense_Mutation p.V49I 0.09 tolerated(0.24) benign(0.005) TCGA-D3-A3MO-06 10 96967012 96967012 C T C10orf129 Missense_Mutation p.R151C 0.86 deleterious(0.04) benign(0.263) TCGA-D3-A3MO-06 11 111708291 111708291 T G ALG9 Missense_Mutation p.T287P 0.62 tolerated(0.1) benign(0.43) TCGA-D3-A3MO-06 11 113075075 113075075 C G NCAM1 Missense_Mutation p.N124K 0.58 deleterious(0.01) benign(0.058) TCGA-D3-A3MO-06 11 45891312 45891312 G A CRY2 Missense_Mutation p.V401M 0.09 deleterious(0) probably_damaging(0.989) TCGA-D3-A3MO-06 11 5322673 5322673 G A OR51B4 Silent p.S168S 0.28 TCGA-D3-A3MO-06 11 55872882 55872882 C T OR8H2 Missense_Mutation p.R122C 0.61 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A3MO-06 11 6643936 6643936 G A DCHS1 Missense_Mutation p.R2991W 0.21 deleterious(0) probably_damaging(0.929) TCGA-D3-A3MO-06 12 10603138 10603138 C T KLRC1 Silent p.L76L 0.39 TCGA-D3-A3MO-06 12 4385346 4385346 G A CCND2 Missense_Mutation p.C124Y 0.28 deleterious(0) possibly_damaging(0.452) TCGA-D3-A3MO-06 12 49360258 49360258 C T WNT10B Missense_Mutation p.A264T 0.59 tolerated(0.11) benign(0.324) TCGA-D3-A3MO-06 12 49399093 49399093 G A PRKAG1 Missense_Mutation p.A111V 0.42 deleterious(0) benign(0.062) TCGA-D3-A3MO-06 12 51208211 51208211 A T ATF1 Missense_Mutation p.L220F 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MO-06 12 69120309 69120309 C T NUP107 Missense_Mutation p.S536F 0.35 deleterious(0.03) possibly_damaging(0.701) TCGA-D3-A3MO-06 14 45369816 45369816 G C C14orf28 Missense_Mutation p.D60H 0.52 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D3-A3MO-06 14 70990374 70990374 A G ADAM20 Silent p.H417H 0.35 TCGA-D3-A3MO-06 14 77809738 77809738 G A TMED8 Silent p.S181S 0.62 TCGA-D3-A3MO-06 15 42436655 42436655 G A PLA2G4F Silent p.A656A 0.44 TCGA-D3-A3MO-06 15 49869012 49869012 C T FAM227B Missense_Mutation p.E158K 0.40 tolerated(0.21) benign(0.337) TCGA-D3-A3MO-06 15 73994688 73994696 TTCAGCCTG - CD276 In_Frame_Del p.F58_L60del 0.41 TCGA-D3-A3MO-06 16 89627900 89627900 C T RPL13 Intron 0.39 TCGA-D3-A3MO-06 17 40481782 40481782 G A STAT3 Silent p.D374D 0.52 TCGA-D3-A3MO-06 17 76511015 76511015 C T DNAH17 Silent p.K1314K 0.48 TCGA-D3-A3MO-06 19 17885062 17885062 G A FCHO1 Missense_Mutation p.E269K 0.27 deleterious(0.02) benign(0.221) TCGA-D3-A3MO-06 19 40434213 40434213 C T FCGBP Missense_Mutation p.G19E 0.49 possibly_damaging(0.651) TCGA-D3-A3MO-06 19 4222681 4222681 C T ANKRD24 Silent p.S1062S 0.14 TCGA-D3-A3MO-06 19 44048353 44048353 C T XRCC1 Missense_Mutation p.G552E 0.33 deleterious(0) probably_damaging(0.952) TCGA-D3-A3MO-06 19 49104408 49104408 C T FAM83E Silent p.P465P 0.54 TCGA-D3-A3MO-06 19 5915048 5915048 G A CAPS Missense_Mutation p.G120E 0.37 tolerated(0.05) probably_damaging(0.993) TCGA-D3-A3MO-06 1 115128189 115128189 T C DENND2C 3'UTR 0.22 TCGA-D3-A3MO-06 1 166990932 166990932 C T MAEL Missense_Mutation p.S382F 0.22 tolerated(0.71) benign(0.165) TCGA-D3-A3MO-06 1 171244557 171244557 G A FMO1 Missense_Mutation p.E132K 0.30 tolerated(0.14) benign(0.023) TCGA-D3-A3MO-06 1 186413385 186413385 G A PDC Missense_Mutation p.T156I 0.31 tolerated(0.36) benign(0.025) TCGA-D3-A3MO-06 1 19204081 19204081 G A ALDH4A1 Silent p.F322F 0.32 TCGA-D3-A3MO-06 1 206658624 206658624 C T IKBKE Nonsense_Mutation p.Q533* 0.22 TCGA-D3-A3MO-06 1 232581393 232581393 T C SIPA1L2 Missense_Mutation p.R1079G 0.24 deleterious(0.01) possibly_damaging(0.793) TCGA-D3-A3MO-06 1 24454678 24454678 C A IL22RA1 Missense_Mutation p.W208L 0.22 tolerated(0.96) benign(0.006) TCGA-D3-A3MO-06 1 94933537 94933537 G A ABCD3 Missense_Mutation p.M103I 0.37 tolerated(0.09) benign(0.145) TCGA-D3-A3MO-06 1 97236329 97236329 A T PTBP2 Silent p.T118T 0.41 TCGA-D3-A3MO-06 1 97236330 97236330 C T PTBP2 Missense_Mutation p.P119S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3MO-06 1 98187190 98187190 T C DPYD Missense_Mutation p.N120S 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A3MO-06 20 61981938 61981938 G C CHRNA4 Missense_Mutation p.I275M 0.47 deleterious(0.02) possibly_damaging(0.763) TCGA-D3-A3MO-06 20 62839564 62839564 G T MYT1 Nonsense_Mutation p.E339* 0.40 TCGA-D3-A3MO-06 21 47805830 47805830 G A PCNT Silent p.R1132R 0.41 TCGA-D3-A3MO-06 22 17690464 17690464 G A CECR1 Missense_Mutation p.A35V 0.67 tolerated(0.18) benign(0.004) TCGA-D3-A3MO-06 2 170033017 170033017 T C LRP2 Missense_Mutation p.E3492G 0.47 possibly_damaging(0.616) TCGA-D3-A3MO-06 2 198593229 198593229 G A BOLL 3'UTR 0.41 TCGA-D3-A3MO-06 2 202575791 202575791 T A ALS2 Missense_Mutation p.S1349C 0.40 tolerated(0.17) benign(0.013) TCGA-D3-A3MO-06 2 218696216 218696216 G T TNS1 Missense_Mutation p.P987H 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MO-06 2 242011284 242011284 G A SNED1 Missense_Mutation p.V1270M 0.47 tolerated(0.17) benign(0.012) TCGA-D3-A3MO-06 2 89384737 89384737 G A IGKV3-15 Missense_Mutation p.T94I 0.26 deleterious(0) benign(0.168) TCGA-D3-A3MO-06 2 98165937 98165937 T C ANKRD36B RNA 0.45 TCGA-D3-A3MO-06 3 122003268 122003268 C T CASR Missense_Mutation p.P833S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A3MO-06 3 133667504 133667504 G A SLCO2A1 Silent p.L327L 0.47 TCGA-D3-A3MO-06 3 51937001 51937001 C A IQCF1 Missense_Mutation p.E36D 0.19 tolerated(0.1) benign(0.021) TCGA-D3-A3MO-06 4 126238008 126238008 A T FAT4 Missense_Mutation p.S148C 0.47 possibly_damaging(0.905) TCGA-D3-A3MO-06 4 5624453 5624453 A C EVC2 Missense_Mutation p.L771R 0.05 deleterious(0.02) probably_damaging(0.955) TCGA-D3-A3MO-06 4 676570 676570 C A MFSD7 Missense_Mutation p.V421L 0.25 tolerated(0.06) benign(0.025) TCGA-D3-A3MO-06 5 101592950 101592950 G A SLCO4C1 Silent p.F446F 0.59 TCGA-D3-A3MO-06 5 132224853 132224853 T - AFF4 Frame_Shift_Del p.S884Vfs*42 0.20 TCGA-D3-A3MO-06 5 140166400 140166400 T C PCDHA1 Silent p.S175S 0.14 TCGA-D3-A3MO-06 5 167631399 167631399 G A TENM2 Silent p.G1199G 0.35 TCGA-D3-A3MO-06 5 169101380 169101380 G A DOCK2 Missense_Mutation p.G134E 0.38 deleterious(0.03) probably_damaging(0.921) TCGA-D3-A3MO-06 5 35873668 35873668 C T IL7R Silent p.I208I 0.40 TCGA-D3-A3MO-06 5 64484041 64484041 G A ADAMTS6 Silent p.F904F 0.46 TCGA-D3-A3MO-06 6 105729674 105729674 C T PREP Nonsense_Mutation p.W595* 0.48 TCGA-D3-A3MO-06 6 117243237 117243237 G A RFX6 Missense_Mutation p.D454N 0.38 tolerated(0.14) benign(0.109) TCGA-D3-A3MO-06 6 130762051 130762051 G A TMEM200A Missense_Mutation p.D162N 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MO-06 6 151914298 151914298 C T CCDC170 Silent p.A450A 0.40 TCGA-D3-A3MO-06 6 3155151 3155151 C T TUBB2A Missense_Mutation p.S95N 0.24 deleterious_low_confidence(0.04) benign(0.098) TCGA-D3-A3MO-06 6 37619953 37619953 C T MDGA1 Silent p.K382K 0.35 TCGA-D3-A3MO-06 7 115580613 115580613 C T TFEC Missense_Mutation p.E346K 0.19 tolerated(0.07) possibly_damaging(0.593) TCGA-D3-A3MO-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-D3-A3MO-06 7 92300791 92300791 G A CDK6 Missense_Mutation p.P199L 0.20 deleterious(0) possibly_damaging(0.477) TCGA-D3-A3MO-06 8 140630645 140630645 G A KCNK9 Silent p.F327F 0.33 TCGA-D3-A3MO-06 8 142229073 142229073 G A SLC45A4 Silent p.F171F 0.26 TCGA-D3-A3MO-06 8 21984639 21984639 G T HR Missense_Mutation p.A439E 0.69 tolerated(0.23) benign(0.006) TCGA-D3-A3MO-06 8 21984959 21984959 G T HR Silent p.P332P 0.67 TCGA-D3-A3MO-06 8 21985008 21985008 G C HR Missense_Mutation p.S316C 0.80 deleterious(0) probably_damaging(0.954) TCGA-D3-A3MO-06 8 37693253 37693253 G A GPR124 Missense_Mutation p.R672H 0.23 deleterious(0.02) benign(0.082) TCGA-D3-A3MO-06 9 107367080 107367080 C T OR13C2 Missense_Mutation p.D277N 0.33 deleterious(0.04) benign(0.061) TCGA-D3-A3MO-06 9 131730827 131730828 - A NUP188 Frame_Shift_Ins p.Q211Tfs*16 0.32 TCGA-D3-A3MO-06 X 29938181 29938181 C T IL1RAPL1 Nonsense_Mutation p.R343* 0.98 TCGA-D3-A3MO-06 X 78427553 78427553 A G GPR174 3'UTR 0.18 TCGA-D3-A3MO-06 Y 5605718 5605718 C T PCDH11Y Missense_Mutation p.S1253F 0.92 deleterious_low_confidence(0.01) benign(0.005) TCGA-D3-A3MR-06 10 101716029 101716029 G A DNMBP Missense_Mutation p.P401L 0.19 tolerated_low_confidence(0.75) benign(0) TCGA-D3-A3MR-06 10 105811955 105811955 G A COL17A1 Missense_Mutation p.P654S 0.23 unknown(0) TCGA-D3-A3MR-06 10 105815688 105815688 C T COL17A1 Silent p.G513G 0.22 TCGA-D3-A3MR-06 10 115350520 115350520 C T NRAP Silent p.K1591K 0.21 TCGA-D3-A3MR-06 10 12077166 12077166 G A UPF2 Missense_Mutation p.S86L 0.19 tolerated_low_confidence(0.31) unknown(0) TCGA-D3-A3MR-06 10 127464369 127464369 G A MMP21 Missense_Mutation p.R8C 0.23 tolerated_low_confidence(0.14) benign(0.002) TCGA-D3-A3MR-06 10 13251260 13251260 C T MCM10 Silent p.L860L 0.07 TCGA-D3-A3MR-06 10 13336470 13336470 G A PHYH Silent p.F124F 0.13 TCGA-D3-A3MR-06 10 135125390 135125390 C T ZNF511 Intron 0.22 TCGA-D3-A3MR-06 10 17271887 17271887 G A VIM Missense_Mutation p.E156K 0.21 deleterious(0) possibly_damaging(0.522) TCGA-D3-A3MR-06 10 25312884 25312884 G A THNSL1 Silent p.Q244Q 0.19 TCGA-D3-A3MR-06 10 26310574 26310574 C A MYO3A Missense_Mutation p.P243Q 0.20 deleterious(0) probably_damaging(0.991) TCGA-D3-A3MR-06 10 26463420 26463420 G A MYO3A Silent p.K1409K 0.14 TCGA-D3-A3MR-06 10 30317348 30317348 C T KIAA1462 Missense_Mutation p.E577K 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A3MR-06 10 31137605 31137608 CAAA - ZNF438 Frame_Shift_Del p.F576Afs*10 0.13 TCGA-D3-A3MR-06 10 43089382 43089382 C T ZNF33B Nonsense_Mutation p.W339* 0.11 TCGA-D3-A3MR-06 10 44053549 44053549 G A ZNF239 5'UTR 0.27 TCGA-D3-A3MR-06 10 50828660 50828660 G A CHAT Splice_Site p.X233_splice 0.17 TCGA-D3-A3MR-06 10 50959958 50959958 G A OGDHL Missense_Mutation p.R222W 0.21 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 10 5147811 5147811 G A AKR1C3 Missense_Mutation p.E291K 0.15 deleterious(0.05) benign(0.054) TCGA-D3-A3MR-06 10 54530490 54530490 G A MBL2 Missense_Mutation p.P82S 0.32 tolerated(0.18) benign(0.196) TCGA-D3-A3MR-06 10 5925962 5925962 G A ANKRD16 Silent p.D219D 0.07 TCGA-D3-A3MR-06 10 5937086 5937086 C T FBXO18 Silent p.G30G 0.13 TCGA-D3-A3MR-06 10 70451302 70451302 T C TET1 Missense_Mutation p.F2048L 0.22 tolerated(0.05) benign(0.41) TCGA-D3-A3MR-06 10 72026036 72026036 G T NPFFR1 Missense_Mutation p.S40Y 0.23 tolerated(0.23) benign(0.14) TCGA-D3-A3MR-06 10 73537628 73537628 C T C10orf54 5'Flank 0.17 TCGA-D3-A3MR-06 10 74644032 74644032 T A MCU Silent p.V290V 0.23 TCGA-D3-A3MR-06 10 75290531 75290531 G A USP54 Missense_Mutation p.R460C 0.09 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 10 89720741 89720741 C T PTEN Nonsense_Mutation p.Q298* 0.24 TCGA-D3-A3MR-06 10 95892047 95892047 C G PLCE1 Missense_Mutation p.C441W 0.17 deleterious_low_confidence(0.01) benign(0.283) TCGA-D3-A3MR-06 10 96094420 96094420 G A NOC3L Missense_Mutation p.P749S 0.20 tolerated(0.13) benign(0.311) TCGA-D3-A3MR-06 10 98816184 98816184 C T SLIT1 Missense_Mutation p.D399N 0.16 tolerated(0.47) benign(0.02) TCGA-D3-A3MR-06 11 100179205 100179205 G A CNTN5 Intron 0.12 TCGA-D3-A3MR-06 11 1093772 1093772 C T MUC2 Missense_Mutation p.S1864F 0.10 unknown(0) TCGA-D3-A3MR-06 11 117982545 117982545 G A TMPRSS4 Missense_Mutation p.D225N 0.09 tolerated(0.97) benign(0.004) TCGA-D3-A3MR-06 11 119029407 119029407 C T ABCG4 Silent p.F436F 0.11 TCGA-D3-A3MR-06 11 120745847 120745847 G T GRIK4 Splice_Site p.X354_splice 0.18 TCGA-D3-A3MR-06 11 120837921 120837921 G A GRIK4 Missense_Mutation p.E762K 0.10 tolerated(0.65) probably_damaging(0.996) TCGA-D3-A3MR-06 11 121358740 121358740 G A SORL1 Splice_Site p.X177_splice 0.12 TCGA-D3-A3MR-06 11 1214070 1214070 G A MUC5AC RNA 0.06 TCGA-D3-A3MR-06 11 124120434 124120434 A G OR8G1 Silent p.E4E 0.19 TCGA-D3-A3MR-06 11 129785596 129785596 G A PRDM10 Missense_Mutation p.P833S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A3MR-06 11 1651391 1651391 G A KRTAP5-5 Silent p.G107G 0.07 TCGA-D3-A3MR-06 11 17482077 17482077 G A ABCC8 Silent p.I323I 0.11 TCGA-D3-A3MR-06 11 17547970 17547970 C T USH1C Missense_Mutation p.G200S 0.11 tolerated(0.19) benign(0.002) TCGA-D3-A3MR-06 11 18025994 18025994 G A SERGEF Silent p.A147A 0.12 TCGA-D3-A3MR-06 11 18498021 18498021 A T LDHAL6A Missense_Mutation p.E228V 0.23 deleterious(0.02) possibly_damaging(0.588) TCGA-D3-A3MR-06 11 18737028 18737028 C T IGSF22 Silent p.Q494Q 0.06 TCGA-D3-A3MR-06 11 19077107 19077107 G A MRGPRX2 Silent p.F281F 0.09 TCGA-D3-A3MR-06 11 36511689 36511689 G A TRAF6 Missense_Mutation p.P423L 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MR-06 11 3681006 3681006 G A ART1 Nonsense_Mutation p.W86* 0.12 TCGA-D3-A3MR-06 11 40136805 40136805 C T LRRC4C Silent p.Q346Q 0.27 TCGA-D3-A3MR-06 11 45671936 45671936 C T CHST1 Missense_Mutation p.D180N 0.08 tolerated(0.32) possibly_damaging(0.499) TCGA-D3-A3MR-06 11 45671937 45671937 C T CHST1 Silent p.G179G 0.08 TCGA-D3-A3MR-06 11 4598983 4598983 C T C11orf40 Missense_Mutation p.R23K 0.20 deleterious_low_confidence(0) benign(0.14) TCGA-D3-A3MR-06 11 47721063 47721063 C T AGBL2 Missense_Mutation p.G210E 0.13 deleterious(0) probably_damaging(0.993) TCGA-D3-A3MR-06 11 4936635 4936635 G A OR51G2 Silent p.L87L 0.19 TCGA-D3-A3MR-06 11 49974661 49974661 G A OR4C13 Silent p.E229E 0.07 TCGA-D3-A3MR-06 11 5247987 5247987 G A HBB Silent p.S45S 0.12 TCGA-D3-A3MR-06 11 5248028 5248028 G A HBB Silent p.L32L 0.12 TCGA-D3-A3MR-06 11 5462722 5462722 G A OR51I1 Missense_Mutation p.P8L 0.10 tolerated(0.64) benign(0.002) TCGA-D3-A3MR-06 11 55595578 55595578 A G OR5L2 Missense_Mutation p.K295R 0.17 deleterious(0.05) benign(0.023) TCGA-D3-A3MR-06 11 55905072 55905072 C T OR8J3 Silent p.G41G 0.09 TCGA-D3-A3MR-06 11 55944934 55944934 G A OR5J2 Missense_Mutation p.G281R 0.09 deleterious(0) benign(0.334) TCGA-D3-A3MR-06 11 56043350 56043350 C T OR5T1 Missense_Mutation p.S79L 0.25 deleterious(0) probably_damaging(0.988) TCGA-D3-A3MR-06 11 56113940 56113940 G A OR8K1 Missense_Mutation p.M142I 0.06 deleterious_low_confidence(0.01) benign(0.298) TCGA-D3-A3MR-06 11 5665023 5665023 C T TRIM34 3'UTR 0.10 TCGA-D3-A3MR-06 11 57982883 57982883 C T OR1S1 Missense_Mutation p.P223S 0.22 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MR-06 11 58190011 58190011 G A OR5B2 Missense_Mutation p.H242Y 0.27 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-D3-A3MR-06 11 58391897 58391897 A G CNTF Missense_Mutation p.T169A 0.08 tolerated(0.35) possibly_damaging(0.9) TCGA-D3-A3MR-06 11 605665 605665 C T PHRF1 Silent p.S464S 0.17 TCGA-D3-A3MR-06 11 60699182 60699182 C T TMEM132A Silent p.F347F 0.21 TCGA-D3-A3MR-06 11 60707011 60707011 C T SLC15A3 Nonsense_Mutation p.W459* 0.22 TCGA-D3-A3MR-06 11 61249316 61249316 C T PPP1R32 Missense_Mutation p.P12L 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 11 61560071 61560071 G A TMEM258 5'UTR 0.05 TCGA-D3-A3MR-06 11 62189870 62189870 T A SCGB1A1 Missense_Mutation p.I78N 0.16 deleterious(0.01) benign(0.051) TCGA-D3-A3MR-06 11 62749325 62749325 G C SLC22A6 Missense_Mutation p.F262L 0.17 tolerated(0.11) benign(0.261) TCGA-D3-A3MR-06 11 62933664 62933664 G A SLC22A25 Silent p.F379F 0.17 TCGA-D3-A3MR-06 11 63064844 63064844 C T SLC22A10 Silent p.F192F 0.24 TCGA-D3-A3MR-06 11 64985141 64985141 C T SLC22A20 RNA 0.26 TCGA-D3-A3MR-06 11 66083219 66083219 G A CD248 Missense_Mutation p.P427L 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-D3-A3MR-06 11 7064086 7064086 G A NLRP14 Missense_Mutation p.E277K 0.18 tolerated(0.89) benign(0.004) TCGA-D3-A3MR-06 11 71238978 71238978 C T KRTAP5-7 3'UTR 0.29 TCGA-D3-A3MR-06 11 71906414 71906414 G A FOLR1 Missense_Mutation p.G90R 0.14 tolerated(0.06) possibly_damaging(0.628) TCGA-D3-A3MR-06 11 74651883 74651883 G A XRRA1 Missense_Mutation p.P14L 0.38 deleterious(0.02) possibly_damaging(0.632) TCGA-D3-A3MR-06 11 7727918 7727918 C T OVCH2 Silent p.L8L 0.44 TCGA-D3-A3MR-06 11 77936242 77936242 G A GAB2 Missense_Mutation p.S405F 0.11 deleterious(0) possibly_damaging(0.602) TCGA-D3-A3MR-06 11 7817839 7817839 G A OR5P2 Silent p.I217I 0.11 TCGA-D3-A3MR-06 11 89392838 89392838 A C FOLH1B RNA 0.10 TCGA-D3-A3MR-06 11 92086894 92086894 C T FAT3 Missense_Mutation p.S539F 0.13 probably_damaging(0.972) TCGA-D3-A3MR-06 11 92531961 92531961 G A FAT3 Missense_Mutation p.D1928N 0.15 benign(0.083) TCGA-D3-A3MR-06 12 101505352 101505352 G A ANO4 Missense_Mutation p.G737R 0.17 tolerated(0.06) probably_damaging(1) TCGA-D3-A3MR-06 12 101746874 101746874 G A UTP20 Missense_Mutation p.E1692K 0.06 tolerated(0.42) benign(0.003) TCGA-D3-A3MR-06 12 10342589 10342589 C T TMEM52B Silent p.T114T 0.16 TCGA-D3-A3MR-06 12 107141298 107141298 C T RFX4 Missense_Mutation p.P582S 0.19 tolerated_low_confidence(0.13) benign(0.046) TCGA-D3-A3MR-06 12 10962106 10962106 G A TAS2R9 Missense_Mutation p.P190L 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-D3-A3MR-06 12 10978256 10978256 T G TAS2R10 Silent p.R205R 0.17 TCGA-D3-A3MR-06 12 110246231 110246231 G A TRPV4 Silent p.P143P 0.14 TCGA-D3-A3MR-06 12 112182658 112182658 T C ACAD10 Silent p.A673A 0.05 TCGA-D3-A3MR-06 12 11546821 11546821 C T PRB2 Missense_Mutation p.G64E 0.19 tolerated(0.13) unknown(0) TCGA-D3-A3MR-06 12 117013787 117013787 G A MAP1LC3B2 Missense_Mutation p.E14K 0.26 tolerated(0.3) benign(0.001) TCGA-D3-A3MR-06 12 118481179 118481179 G C WSB2 Missense_Mutation p.I62M 0.11 tolerated(0.16) benign(0.014) TCGA-D3-A3MR-06 12 121867834 121867834 G A KDM2B 3'UTR 0.12 TCGA-D3-A3MR-06 12 123030766 123030766 C G KNTC1 Missense_Mutation p.S238C 0.09 tolerated(0.08) possibly_damaging(0.62) TCGA-D3-A3MR-06 12 124419271 124419271 C T DNAH10 Silent p.I4409I 0.07 TCGA-D3-A3MR-06 12 124419272 124419272 C T DNAH10 Silent p.L4410L 0.07 TCGA-D3-A3MR-06 12 132239014 132239014 A G SFSWAP Missense_Mutation p.E475G 0.24 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 12 133728428 133728428 G A CTD-2140B24.4 Missense_Mutation p.R65Q 0.07 tolerated(0.7) benign(0.004) TCGA-D3-A3MR-06 12 13906752 13906752 G A GRIN2B Missense_Mutation p.S170F 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 12 15702028 15702028 G A PTPRO Missense_Mutation p.E769K 0.16 deleterious(0.01) probably_damaging(0.936) TCGA-D3-A3MR-06 12 18552700 18552700 G A PIK3C2G Missense_Mutation p.R704K 0.24 tolerated(0.52) benign(0.005) TCGA-D3-A3MR-06 12 18865862 18865862 C T PLCZ1 Missense_Mutation p.E210K 0.15 deleterious(0.01) possibly_damaging(0.654) TCGA-D3-A3MR-06 12 18872489 18872489 C T PLCZ1 Missense_Mutation p.E149K 0.17 tolerated(0.3) benign(0.033) TCGA-D3-A3MR-06 12 20790133 20790133 G A PDE3A Missense_Mutation p.E701K 0.16 deleterious(0.03) possibly_damaging(0.621) TCGA-D3-A3MR-06 12 21733376 21733376 G A GYS2 Missense_Mutation p.P68L 0.15 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MR-06 12 21807538 21807538 T C LDHB Missense_Mutation p.K23R 0.20 deleterious(0.02) benign(0.174) TCGA-D3-A3MR-06 12 23699316 23699316 T A SOX5 Nonsense_Mutation p.K511* 0.26 TCGA-D3-A3MR-06 12 24736351 24736351 G A LINC00477 RNA 0.19 TCGA-D3-A3MR-06 12 2676817 2676817 C T CACNA1C Silent p.F584F 0.24 TCGA-D3-A3MR-06 12 333660 333660 G A SLC6A13 Silent p.I360I 0.19 TCGA-D3-A3MR-06 12 41312459 41312459 G A CNTN1 Missense_Mutation p.G38E 0.16 tolerated(0.06) probably_damaging(0.935) TCGA-D3-A3MR-06 12 46244586 46244586 C T ARID2 Nonsense_Mutation p.Q894* 0.25 TCGA-D3-A3MR-06 12 49943421 49943421 G A KCNH3 Missense_Mutation p.E556K 0.17 deleterious(0) probably_damaging(0.936) TCGA-D3-A3MR-06 12 50471847 50471847 C T ASIC1 Silent p.I258I 0.16 TCGA-D3-A3MR-06 12 51857446 51857446 G A SLC4A8 Missense_Mutation p.E433K 0.13 tolerated(0.15) benign(0.009) TCGA-D3-A3MR-06 12 52312836 52312836 G A ACVRL1 Missense_Mutation p.M438I 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A3MR-06 12 52369269 52369269 C T ACVR1B Silent p.I104I 0.08 TCGA-D3-A3MR-06 12 53567519 53567519 C T CSAD Missense_Mutation p.S23N 0.22 tolerated(0.94) benign(0.01) TCGA-D3-A3MR-06 12 54651414 54651414 C T CBX5 Silent p.R7R 0.19 TCGA-D3-A3MR-06 12 55367343 55367343 G A TESPA1 Intron 0.24 TCGA-D3-A3MR-06 12 55614885 55614885 C T OR10A7 Missense_Mutation p.S26F 0.13 tolerated(0.4) benign(0.002) TCGA-D3-A3MR-06 12 55615075 55615075 G A OR10A7 Silent p.R89R 0.17 TCGA-D3-A3MR-06 12 55615429 55615429 C T OR10A7 Silent p.I207I 0.10 TCGA-D3-A3MR-06 12 55688321 55688321 C T OR6C6 Silent p.R232R 0.19 TCGA-D3-A3MR-06 12 56101443 56101443 G A ITGA7 Silent p.D8D 0.33 TCGA-D3-A3MR-06 12 56565110 56565110 G A SMARCC2 Silent p.F733F 0.26 TCGA-D3-A3MR-06 12 57958276 57958276 C T KIF5A Missense_Mutation p.R144C 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 12 58013999 58013999 C T SLC26A10 5'UTR 0.15 TCGA-D3-A3MR-06 12 6030283 6030283 C T ANO2 Missense_Mutation p.E149K 0.23 tolerated(0.06) probably_damaging(0.962) TCGA-D3-A3MR-06 12 6167054 6167054 T C VWF Missense_Mutation p.K564E 0.17 tolerated(0.06) benign(0.009) TCGA-D3-A3MR-06 12 62104182 62104182 C T FAM19A2 3'UTR 0.12 TCGA-D3-A3MR-06 12 68642487 68642487 C T IL22 3'UTR 0.11 TCGA-D3-A3MR-06 12 7457003 7457003 G A ACSM4 Missense_Mutation p.D26N 0.16 tolerated(0.49) benign(0.002) TCGA-D3-A3MR-06 12 7470725 7470725 G A ACSM4 Missense_Mutation p.A290T 0.14 tolerated(0.1) possibly_damaging(0.503) TCGA-D3-A3MR-06 12 75804310 75804310 C T GLIPR1L2 Missense_Mutation p.P111S 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 12 7640269 7640269 C T CD163 Missense_Mutation p.R579K 0.16 tolerated(0.14) probably_damaging(0.997) TCGA-D3-A3MR-06 12 7649726 7649726 C T CD163 Missense_Mutation p.G261E 0.20 tolerated(0.09) benign(0.367) TCGA-D3-A3MR-06 12 79685854 79685854 G A SYT1 Missense_Mutation p.E140K 0.12 tolerated(0.47) benign(0.002) TCGA-D3-A3MR-06 12 8083141 8083141 G A SLC2A3 Missense_Mutation p.P203L 0.19 tolerated(0.29) benign(0.232) TCGA-D3-A3MR-06 12 8242619 8242619 G A NECAP1 Silent p.E61E 0.12 TCGA-D3-A3MR-06 12 8374895 8374895 C T FAM90A1 Silent p.K306K 0.07 TCGA-D3-A3MR-06 12 8758052 8758052 G A AICDA Silent p.L62L 0.15 TCGA-D3-A3MR-06 12 89998119 89998119 A T ATP2B1 Missense_Mutation p.I816N 0.08 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 12 91497887 91497887 G A LUM 3'UTR 0.32 TCGA-D3-A3MR-06 12 9318781 9318781 C T PZP Missense_Mutation p.E709K 0.19 tolerated(0.84) benign(0.002) TCGA-D3-A3MR-06 12 95604014 95604014 G A FGD6 Missense_Mutation p.S349F 0.13 tolerated_low_confidence(0.62) benign(0.009) TCGA-D3-A3MR-06 12 96273426 96273426 T G CCDC38 Missense_Mutation p.K380Q 0.06 deleterious(0) probably_damaging(0.984) TCGA-D3-A3MR-06 12 96371777 96371777 G A HAL Silent p.S533S 0.14 TCGA-D3-A3MR-06 12 98938116 98938116 C G TMPO Missense_Mutation p.P258A 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A3MR-06 12 98938117 98938117 C T TMPO Missense_Mutation p.P258L 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A3MR-06 13 101720364 101720364 G A NALCN Missense_Mutation p.S1451F 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 13 101762998 101762998 C T NALCN Missense_Mutation p.G779E 0.08 tolerated(0.41) benign(0.115) TCGA-D3-A3MR-06 13 110822001 110822001 C T COL4A1 Missense_Mutation p.G1284E 0.11 probably_damaging(1) TCGA-D3-A3MR-06 13 110825076 110825076 C T COL4A1 Missense_Mutation p.G1183R 0.08 probably_damaging(0.999) TCGA-D3-A3MR-06 13 110861212 110861212 C T COL4A1 Missense_Mutation p.G226E 0.07 unknown(0) TCGA-D3-A3MR-06 13 111158773 111158773 C T COL4A2 Missense_Mutation p.R1472C 0.13 unknown(0) TCGA-D3-A3MR-06 13 112722185 112722185 G A SOX1 Silent p.Q71Q 0.17 TCGA-D3-A3MR-06 13 24242875 24242875 C T TNFRSF19 Missense_Mutation p.S295F 0.12 deleterious(0) possibly_damaging(0.89) TCGA-D3-A3MR-06 13 25370322 25370322 T A RNF17 Missense_Mutation p.F430I 0.11 deleterious(0) possibly_damaging(0.873) TCGA-D3-A3MR-06 13 26788126 26788126 G A RNF6 Silent p.I631I 0.07 TCGA-D3-A3MR-06 13 31711477 31711477 G A HSPH1 Missense_Mutation p.S852F 0.12 deleterious(0.05) possibly_damaging(0.45) TCGA-D3-A3MR-06 13 32808805 32808805 C T FRY Silent p.F1874F 0.11 TCGA-D3-A3MR-06 13 33703093 33703093 A C STARD13 Missense_Mutation p.V574G 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 13 36748638 36748638 G A SOHLH2 Missense_Mutation p.L363F 0.11 tolerated(0.1) benign(0.005) TCGA-D3-A3MR-06 13 48542773 48542773 G A SUCLA2 Silent p.T253T 0.10 TCGA-D3-A3MR-06 13 58240877 58240877 G C PCDH17 Missense_Mutation p.D903H 0.12 deleterious(0) probably_damaging(0.993) TCGA-D3-A3MR-06 13 72147133 72147133 G A DACH1 Missense_Mutation p.P382S 0.08 probably_damaging(1) TCGA-D3-A3MR-06 13 77779699 77779699 T C MYCBP2 Silent p.L1170L 0.10 TCGA-D3-A3MR-06 13 99508279 99508279 G A DOCK9 Missense_Mutation p.P1235L 0.10 tolerated(0.2) probably_damaging(1) TCGA-D3-A3MR-06 14 105212676 105212676 G A ADSSL1 Silent p.Q468Q 0.12 TCGA-D3-A3MR-06 14 105212677 105212677 G A ADSSL1 Missense_Mutation p.A469T 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 14 105927123 105927123 C T MTA1 Missense_Mutation p.H259Y 0.20 tolerated(0.08) probably_damaging(0.993) TCGA-D3-A3MR-06 14 106967197 106967197 C T IGHV1-46 Missense_Mutation p.G68E 0.17 deleterious(0.01) possibly_damaging(0.496) TCGA-D3-A3MR-06 14 20404664 20404664 C T OR4K1 Missense_Mutation p.P280L 0.07 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 14 22356656 22356656 C T TRAV12-2 Missense_Mutation p.S105L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A3MR-06 14 24031768 24031768 C T AP1G2 Missense_Mutation p.G482E 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 14 24109067 24109067 G A DHRS2 Missense_Mutation p.G128E 0.19 deleterious(0.05) possibly_damaging(0.798) TCGA-D3-A3MR-06 14 25281928 25281928 T C STXBP6 Missense_Mutation p.K207R 0.24 tolerated(0.06) possibly_damaging(0.542) TCGA-D3-A3MR-06 14 51446259 51446259 C T TRIM9 Missense_Mutation p.G639E 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 14 59112911 59112911 C T DACT1 Missense_Mutation p.P524S 0.27 tolerated(0.29) benign(0.032) TCGA-D3-A3MR-06 14 63175092 63175092 G A KCNH5 Missense_Mutation p.P701S 0.25 tolerated(0.14) probably_damaging(0.996) TCGA-D3-A3MR-06 14 63269283 63269283 G A KCNH5 Missense_Mutation p.P529L 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 14 65239972 65239972 G A SPTB Missense_Mutation p.S1715F 0.25 deleterious(0) probably_damaging(0.94) TCGA-D3-A3MR-06 14 70234911 70234911 C T SRSF5 Missense_Mutation p.P13L 0.13 tolerated(0.36) possibly_damaging(0.72) TCGA-D3-A3MR-06 14 71067384 71067384 C T MED6 5'UTR 0.18 TCGA-D3-A3MR-06 14 75301980 75301980 G A YLPM1 Missense_Mutation p.D2103N 0.16 probably_damaging(0.999) TCGA-D3-A3MR-06 14 94401016 94401016 C T ASB2 Missense_Mutation p.E632K 0.20 tolerated(0.23) benign(0.023) TCGA-D3-A3MR-06 14 95234853 95234853 T C GSC Missense_Mutation p.K250R 0.22 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-D3-A3MR-06 14 96180332 96180332 G A TCL1A Silent p.F24F 0.17 TCGA-D3-A3MR-06 14 96772123 96772123 G A ATG2B Silent p.I1512I 0.25 TCGA-D3-A3MR-06 15 22332424 22332424 G A RP11-69H14.6 RNA 0.05 TCGA-D3-A3MR-06 15 22709217 22709217 G A AC116165.1 5'Flank 0.21 TCGA-D3-A3MR-06 15 22846947 22846947 C T TUBGCP5 Silent p.T274T 0.14 TCGA-D3-A3MR-06 15 22846948 22846948 C T TUBGCP5 Silent p.L275L 0.13 TCGA-D3-A3MR-06 15 23890456 23890456 C T MAGEL2 Missense_Mutation p.E209K 0.30 deleterious(0) benign(0.417) TCGA-D3-A3MR-06 15 25299373 25299373 C T SNORD116-2 RNA 0.16 TCGA-D3-A3MR-06 15 25419962 25419962 C T SNORD115-3 5'Flank 0.36 TCGA-D3-A3MR-06 15 25442629 25442629 C T SNORD115-14 3'Flank 0.23 TCGA-D3-A3MR-06 15 25451426 25451426 C T SNORD115-20 RNA 0.15 TCGA-D3-A3MR-06 15 28202874 28202874 C T OCA2 Silent p.K548K 0.09 TCGA-D3-A3MR-06 15 34640478 34640478 C T NUTM1 Missense_Mutation p.L109F 0.12 deleterious(0.02) probably_damaging(0.965) TCGA-D3-A3MR-06 15 40093774 40093774 G A GPR176 Silent p.L369L 0.11 TCGA-D3-A3MR-06 15 42363357 42363357 C T PLA2G4D Missense_Mutation p.D614N 0.12 tolerated(0.25) benign(0.022) TCGA-D3-A3MR-06 15 43656348 43656348 G A ZSCAN29 Silent p.P485P 0.10 TCGA-D3-A3MR-06 15 43656349 43656349 G A ZSCAN29 Missense_Mutation p.P485L 0.09 deleterious(0.02) possibly_damaging(0.559) TCGA-D3-A3MR-06 15 43925130 43925130 G A CATSPER2 Missense_Mutation p.S394L 0.08 tolerated(0.34) benign(0) TCGA-D3-A3MR-06 15 44158466 44158466 C T WDR76 Missense_Mutation p.S586L 0.24 deleterious(0) benign(0.279) TCGA-D3-A3MR-06 15 51507963 51507963 C T CYP19A1 Silent p.R265R 0.10 TCGA-D3-A3MR-06 15 53908365 53908365 G A WDR72 Missense_Mutation p.H680Y 0.10 deleterious(0.02) benign(0.157) TCGA-D3-A3MR-06 15 63055759 63055759 C T TLN2 Intron 0.09 TCGA-D3-A3MR-06 15 66207884 66207884 C A MEGF11 Missense_Mutation p.M799I 0.09 deleterious(0.04) benign(0) TCGA-D3-A3MR-06 15 71403623 71403623 C T CT62 Missense_Mutation p.R93Q 0.19 tolerated_low_confidence(0.38) unknown(0) TCGA-D3-A3MR-06 15 72146818 72146818 G A MYO9A Silent p.L2082L 0.09 TCGA-D3-A3MR-06 15 72580713 72580713 G A CELF6 Silent p.P418P 0.13 TCGA-D3-A3MR-06 15 74630382 74630382 G A CYP11A1 Silent p.L499L 0.11 TCGA-D3-A3MR-06 15 93492396 93492396 C T CHD2 Intron 0.16 TCGA-D3-A3MR-06 15 95001366 95001366 G A MCTP2 Missense_Mutation p.E751K 0.06 deleterious(0) probably_damaging(0.988) TCGA-D3-A3MR-06 16 10996626 10996626 G A CIITA Missense_Mutation p.G247E 0.22 tolerated(0.1) possibly_damaging(0.866) TCGA-D3-A3MR-06 16 111685 111685 G A RHBDF1 Silent p.F406F 0.16 TCGA-D3-A3MR-06 16 1129823 1129823 C T SSTR5 Silent p.L319L 0.09 TCGA-D3-A3MR-06 16 12798721 12798721 G A CPPED1 Silent p.L159L 0.09 TCGA-D3-A3MR-06 16 16259672 16259672 C T ABCC6 Silent p.R1038R 0.11 TCGA-D3-A3MR-06 16 18893611 18893611 G A SMG1 Missense_Mutation p.P390L 0.17 tolerated(0.07) probably_damaging(0.986) TCGA-D3-A3MR-06 16 19068000 19068000 C T TMC7 Missense_Mutation p.P670S 0.15 tolerated(0.19) possibly_damaging(0.831) TCGA-D3-A3MR-06 16 19078975 19078975 T A COQ7 5'UTR 0.17 TCGA-D3-A3MR-06 16 20696606 20696606 C T ACSM1 Silent p.Q104Q 0.14 TCGA-D3-A3MR-06 16 2338211 2338211 G A ABCA3 Silent p.A940A 0.19 TCGA-D3-A3MR-06 16 2369795 2369795 C T ABCA3 Silent p.R220R 0.10 TCGA-D3-A3MR-06 16 24104250 24104250 G A PRKCB Nonsense_Mutation p.W223* 0.20 TCGA-D3-A3MR-06 16 24975609 24975609 G A ARHGAP17 Missense_Mutation p.S161F 0.16 deleterious(0) probably_damaging(0.99) TCGA-D3-A3MR-06 16 27495589 27495589 G A GTF3C1 Missense_Mutation p.S1315F 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 16 27556771 27556771 G A GTF3C1 Missense_Mutation p.P99S 0.12 deleterious(0.05) possibly_damaging(0.728) TCGA-D3-A3MR-06 16 28188617 28188617 G A XPO6 Missense_Mutation p.A44V 0.08 tolerated(0.12) possibly_damaging(0.544) TCGA-D3-A3MR-06 16 30724110 30724110 C A SRCAP Missense_Mutation p.Q702K 0.07 unknown(0) TCGA-D3-A3MR-06 16 3639257 3639257 G A SLX4 Missense_Mutation p.A1461V 0.17 deleterious(0.01) benign(0.068) TCGA-D3-A3MR-06 16 3778737 3778737 C G CREBBP Missense_Mutation p.R2104P 0.10 unknown(0) TCGA-D3-A3MR-06 16 4242056 4242056 C T SRL 3'UTR 0.11 TCGA-D3-A3MR-06 16 50667452 50667452 C T NKD1 Silent p.L391L 0.12 TCGA-D3-A3MR-06 16 53358364 53358364 G A CHD9 Missense_Mutation p.E2735K 0.14 unknown(0) TCGA-D3-A3MR-06 16 56403215 56403215 G A AMFR Missense_Mutation p.P469S 0.09 deleterious(0) probably_damaging(0.994) TCGA-D3-A3MR-06 16 57147363 57147363 C T CPNE2 Missense_Mutation p.S115F 0.29 tolerated(0.16) possibly_damaging(0.579) TCGA-D3-A3MR-06 16 66944362 66944362 G A CDH16 Silent p.F656F 0.09 TCGA-D3-A3MR-06 16 67516502 67516502 T C AGRP 3'UTR 0.10 TCGA-D3-A3MR-06 16 71061500 71061500 C T HYDIN Intron 0.11 TCGA-D3-A3MR-06 16 74706390 74706390 G A MLKL 3'UTR 0.24 TCGA-D3-A3MR-06 16 75563644 75563644 G A CHST5 Silent p.P213P 0.26 TCGA-D3-A3MR-06 16 76528909 76528909 G A CNTNAP4 Missense_Mutation p.G655E 0.07 tolerated(1) benign(0.216) TCGA-D3-A3MR-06 16 80646596 80646596 G A CDYL2 Missense_Mutation p.P382L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 16 84075655 84075655 G C SLC38A8 Silent p.S36S 0.08 TCGA-D3-A3MR-06 16 88723968 88723968 C T MVD Silent p.R93R 0.14 TCGA-D3-A3MR-06 16 8889953 8889953 T G TMEM186 Missense_Mutation p.E166D 0.21 tolerated(0.39) benign(0.163) TCGA-D3-A3MR-06 16 89783053 89783053 G A VPS9D1 Intron 0.22 TCGA-D3-A3MR-06 16 90128621 90128621 G A PRDM7 Intron 0.09 TCGA-D3-A3MR-06 16 9858007 9858007 G A GRIN2A Missense_Mutation p.P1132S 0.09 tolerated(0.56) benign(0.097) TCGA-D3-A3MR-06 17 10210316 10210316 C T MYH13 Silent p.V1745V 0.14 TCGA-D3-A3MR-06 17 10265760 10265760 C T MYH13 Missense_Mutation p.E89K 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A3MR-06 17 13972835 13972835 G A COX10 5'Flank 0.18 TCGA-D3-A3MR-06 17 15532109 15532109 G A TRIM16 Silent p.I505I 0.10 TCGA-D3-A3MR-06 17 16843862 16843862 T A TNFRSF13B Intron 0.24 TCGA-D3-A3MR-06 17 21731576 21731576 G A UBBP4 Silent p.S217S 0.11 TCGA-D3-A3MR-06 17 28407116 28407116 G A EFCAB5 Silent p.K1018K 0.19 TCGA-D3-A3MR-06 17 28783309 28783309 C T CPD Missense_Mutation p.L1125F 0.15 deleterious(0.03) possibly_damaging(0.906) TCGA-D3-A3MR-06 17 29226332 29226332 G A TEFM Missense_Mutation p.P313L 0.12 deleterious(0) probably_damaging(0.985) TCGA-D3-A3MR-06 17 2966333 2966333 G A OR1D5 Missense_Mutation p.S190F 0.08 deleterious(0) benign(0.163) TCGA-D3-A3MR-06 17 29848353 29848353 G C RAB11FIP4 Missense_Mutation p.D245H 0.19 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MR-06 17 31322465 31322465 G A SPACA3 Missense_Mutation p.G25R 0.10 deleterious_low_confidence(0) benign(0.034) TCGA-D3-A3MR-06 17 31439085 31439085 C G ASIC2 Missense_Mutation p.V237L 0.12 deleterious(0) possibly_damaging(0.832) TCGA-D3-A3MR-06 17 33454271 33454271 C - FNDC8 Frame_Shift_Del p.P141Hfs*55 0.08 TCGA-D3-A3MR-06 17 33770918 33770918 T G SLFN13 Missense_Mutation p.E363A 0.08 tolerated(0.08) benign(0.231) TCGA-D3-A3MR-06 17 33806439 33806439 C T SLFN12L Missense_Mutation p.E264K 0.20 tolerated(0.07) possibly_damaging(0.857) TCGA-D3-A3MR-06 17 34858987 34858987 G A MYO19 Missense_Mutation p.P677L 0.08 tolerated(0.09) benign(0.023) TCGA-D3-A3MR-06 17 3539577 3539577 C T SHPK 5'UTR 0.17 TCGA-D3-A3MR-06 17 36708223 36708223 C T SRCIN1 Missense_Mutation p.G876R 0.11 deleterious(0.04) possibly_damaging(0.872) TCGA-D3-A3MR-06 17 36963057 36963057 G A CWC25 Missense_Mutation p.S288F 0.08 tolerated(0.2) possibly_damaging(0.564) TCGA-D3-A3MR-06 17 37618599 37618599 A C CDK12 Missense_Mutation p.D92A 0.12 unknown(0) TCGA-D3-A3MR-06 17 37618601 37618601 C T CDK12 Nonsense_Mutation p.R93* 0.12 TCGA-D3-A3MR-06 17 40042492 40042492 A T ACLY Missense_Mutation p.S649T 0.22 deleterious(0.05) benign(0.01) TCGA-D3-A3MR-06 17 40696249 40696249 C T NAGLU Missense_Mutation p.S742F 0.23 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-D3-A3MR-06 17 40850805 40850805 C T CNTNAP1 Silent p.T1344T 0.05 TCGA-D3-A3MR-06 17 40850806 40850806 C T CNTNAP1 Missense_Mutation p.P1345S 0.05 tolerated_low_confidence(0.73) benign(0) TCGA-D3-A3MR-06 17 41170630 41170630 C T VAT1 Missense_Mutation p.V192I 0.14 tolerated(0.14) benign(0.211) TCGA-D3-A3MR-06 17 4841030 4841030 G A SLC25A11 3'UTR 0.09 TCGA-D3-A3MR-06 17 51900733 51900733 G A KIF2B Silent p.T113T 0.21 TCGA-D3-A3MR-06 17 5418790 5418790 G A NLRP1 Intron 0.14 TCGA-D3-A3MR-06 17 5485279 5485279 C T NLRP1 Silent p.G184G 0.17 TCGA-D3-A3MR-06 17 56581139 56581139 G A MTMR4 Nonsense_Mutation p.Q593* 0.12 TCGA-D3-A3MR-06 17 57287820 57287820 C T SMG8 Silent p.S136S 0.29 TCGA-D3-A3MR-06 17 57287821 57287821 C T SMG8 Missense_Mutation p.L137F 0.29 tolerated(0.55) benign(0.091) TCGA-D3-A3MR-06 17 59067406 59067406 C T BCAS3 Silent p.F432F 0.21 TCGA-D3-A3MR-06 17 60788641 60788641 C T MARCH10 Missense_Mutation p.R760K 0.05 deleterious(0.02) possibly_damaging(0.632) TCGA-D3-A3MR-06 17 65944316 65944316 A G BPTF Missense_Mutation p.N2607S 0.07 probably_damaging(0.979) TCGA-D3-A3MR-06 17 681865 681865 G A GLOD4 Intron 0.37 TCGA-D3-A3MR-06 17 7010600 7010600 G A ASGR2 Missense_Mutation p.P154L 0.11 tolerated(0.32) probably_damaging(0.994) TCGA-D3-A3MR-06 17 7193602 7193602 G A YBX2 Missense_Mutation p.P238S 0.20 tolerated(0.1) possibly_damaging(0.641) TCGA-D3-A3MR-06 17 72832879 72832879 C T TMEM104 3'UTR 0.15 TCGA-D3-A3MR-06 17 72859026 72859026 G A FDXR Silent p.A506A 0.23 TCGA-D3-A3MR-06 17 7324240 7324240 C T SPEM1 Silent p.P82P 0.14 TCGA-D3-A3MR-06 17 7358761 7358761 C T CHRNB1 Silent p.F401F 0.16 TCGA-D3-A3MR-06 17 7365848 7365848 G T ZBTB4 Missense_Mutation p.A818D 0.20 possibly_damaging(0.524) TCGA-D3-A3MR-06 17 74133668 74133668 C T FOXJ1 Silent p.V344V 0.16 TCGA-D3-A3MR-06 17 76430278 76430278 C T DNAH17 Silent p.K4013K 0.26 TCGA-D3-A3MR-06 17 76435269 76435269 C T DNAH17 Missense_Mutation p.G3889E 0.26 benign(0.071) TCGA-D3-A3MR-06 17 76472765 76472765 G A DNAH17 Silent p.V2667V 0.13 TCGA-D3-A3MR-06 17 78156504 78156504 C T CARD14 Silent p.F88F 0.13 TCGA-D3-A3MR-06 17 78199644 78199644 G A SLC26A11 Silent p.L174L 0.24 TCGA-D3-A3MR-06 17 78199645 78199645 G A SLC26A11 Missense_Mutation p.G175R 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 17 78350124 78350124 C T RNF213 Silent p.F4403F 0.06 TCGA-D3-A3MR-06 17 7852463 7852463 C T CNTROB Silent p.I880I 0.10 TCGA-D3-A3MR-06 17 79205669 79205669 C T ENTHD2 Missense_Mutation p.E227K 0.05 deleterious(0.02) possibly_damaging(0.864) TCGA-D3-A3MR-06 17 79428193 79428193 C T RP11-1055B8.7 Silent p.F2168F 0.29 TCGA-D3-A3MR-06 17 79514095 79514095 G A C17orf70 Silent p.P671P 0.26 TCGA-D3-A3MR-06 17 8701725 8701725 G A MFSD6L Silent p.S238S 0.19 TCGA-D3-A3MR-06 17 8785182 8785182 C T PIK3R5 Missense_Mutation p.R741Q 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3MR-06 17 9489222 9489222 C T WDR16 Missense_Mutation p.S68F 0.12 deleterious(0) probably_damaging(0.987) TCGA-D3-A3MR-06 18 14542984 14542984 C T POTEC Missense_Mutation p.M54I 0.10 deleterious_low_confidence(0.01) benign(0.019) TCGA-D3-A3MR-06 18 25568610 25568610 G A CDH2 Missense_Mutation p.P540L 0.16 deleterious(0.04) benign(0.116) TCGA-D3-A3MR-06 18 31325207 31325207 C T ASXL3 Missense_Mutation p.P1799S 0.21 probably_damaging(0.962) TCGA-D3-A3MR-06 18 33610771 33610771 C T RPRD1A Silent p.Q162Q 0.20 TCGA-D3-A3MR-06 18 40503584 40503584 G A RIT2 Missense_Mutation p.P127S 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MR-06 18 43224018 43224018 A T SLC14A2 Missense_Mutation p.N415I 0.25 deleterious(0.04) benign(0.083) TCGA-D3-A3MR-06 18 47753835 47753835 G A CCDC11 Silent p.V487V 0.20 TCGA-D3-A3MR-06 18 48327804 48327804 C T MRO Nonsense_Mutation p.W181* 0.11 TCGA-D3-A3MR-06 18 56202905 56202905 G A ALPK2 Missense_Mutation p.P1505L 0.24 deleterious(0.03) probably_damaging(0.962) TCGA-D3-A3MR-06 18 61388197 61388197 G A SERPINB11 Missense_Mutation p.V251I 0.48 tolerated(0.17) benign(0.062) TCGA-D3-A3MR-06 18 61650938 61650938 C T SERPINB8 Missense_Mutation p.L184F 0.25 deleterious(0.03) benign(0.008) TCGA-D3-A3MR-06 18 65181320 65181320 C T DSEL Missense_Mutation p.G186S 0.16 deleterious(0.03) probably_damaging(1) TCGA-D3-A3MR-06 18 70450983 70450983 C T NETO1 Silent p.V266V 0.25 TCGA-D3-A3MR-06 18 71790711 71790711 C T FBXO15 Missense_Mutation p.D344N 0.30 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A3MR-06 18 8825245 8825245 C T SOGA2 Missense_Mutation p.S1246F 0.27 deleterious(0.03) benign(0.213) TCGA-D3-A3MR-06 18 9859270 9859270 G A RAB31 Missense_Mutation p.G179E 0.11 tolerated(0.18) benign(0.005) TCGA-D3-A3MR-06 19 10434207 10434207 G A RAVER1 Silent p.F281F 0.15 TCGA-D3-A3MR-06 19 10753125 10753125 T C SLC44A2 Missense_Mutation p.F671S 0.09 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 19 1119535 1119535 G A SBNO2 Silent p.F451F 0.12 TCGA-D3-A3MR-06 19 13410148 13410148 G A CACNA1A Nonsense_Mutation p.Q767* 0.18 TCGA-D3-A3MR-06 19 16860935 16860935 C T NWD1 Silent p.P494P 0.08 TCGA-D3-A3MR-06 19 16918807 16918807 C T NWD1 Missense_Mutation p.P1383S 0.14 tolerated(0.07) benign(0.155) TCGA-D3-A3MR-06 19 1791840 1791840 G A ATP8B3 Silent p.I737I 0.20 TCGA-D3-A3MR-06 19 18235113 18235113 C T MAST3 Silent p.I265I 0.13 TCGA-D3-A3MR-06 19 18995023 18995023 G A CERS1 Nonsense_Mutation p.Q155* 0.19 TCGA-D3-A3MR-06 19 18995024 18995024 G A CERS1 Silent p.L154L 0.19 TCGA-D3-A3MR-06 19 19337405 19337405 G A NCAN Missense_Mutation p.E395K 0.12 tolerated(0.73) benign(0.018) TCGA-D3-A3MR-06 19 19655339 19655339 C T CILP2 Missense_Mutation p.A662V 0.16 tolerated(0.07) benign(0.002) TCGA-D3-A3MR-06 19 20045506 20045506 C T ZNF93 Missense_Mutation p.S581F 0.21 deleterious(0.04) possibly_damaging(0.789) TCGA-D3-A3MR-06 19 22155698 22155698 C T ZNF208 Missense_Mutation p.R713K 0.08 tolerated(0.53) benign(0.014) TCGA-D3-A3MR-06 19 22363414 22363414 C T ZNF676 Missense_Mutation p.G369R 0.10 deleterious(0) benign(0.091) TCGA-D3-A3MR-06 19 22779166 22779166 C T CTC-457E21.3 RNA 0.50 TCGA-D3-A3MR-06 19 22940896 22940896 G A ZNF99 Silent p.F605F 0.11 TCGA-D3-A3MR-06 19 2991877 2991877 C T TLE6 Silent p.I427I 0.09 TCGA-D3-A3MR-06 19 35085113 35085113 G A SCGB2B2 Silent p.S71S 0.25 TCGA-D3-A3MR-06 19 36215909 36215909 C T KMT2B Missense_Mutation p.P1150L 0.18 benign(0.339) TCGA-D3-A3MR-06 19 36215910 36215910 C T KMT2B Silent p.P1150P 0.17 TCGA-D3-A3MR-06 19 36317477 36317477 C T NPHS1 Missense_Mutation p.G1222E 0.13 tolerated(0.89) benign(0.004) TCGA-D3-A3MR-06 19 38860889 38860889 C T CATSPERG Silent p.F1068F 0.21 TCGA-D3-A3MR-06 19 39023143 39023143 G A RYR1 Missense_Mutation p.D3719N 0.17 benign(0.03) TCGA-D3-A3MR-06 19 39336578 39336578 G A HNRNPL Missense_Mutation p.S180F 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A3MR-06 19 39879936 39879936 C T PAF1 Silent p.E149E 0.20 TCGA-D3-A3MR-06 19 40362910 40362910 G C FCGBP Missense_Mutation p.R5054G 0.11 possibly_damaging(0.765) TCGA-D3-A3MR-06 19 41096315 41096315 C T SHKBP1 Silent p.L585L 0.10 TCGA-D3-A3MR-06 19 41448095 41448095 A T AC092071.1 5'Flank 0.10 TCGA-D3-A3MR-06 19 42341278 42341278 G A LYPD4 Missense_Mutation p.S227F 0.15 tolerated(0.06) benign(0.313) TCGA-D3-A3MR-06 19 42489289 42489289 G A ATP1A3 Silent p.G271G 0.14 TCGA-D3-A3MR-06 19 42857946 42857946 C T MEGF8 Missense_Mutation p.R1194W 0.18 deleterious(0.02) possibly_damaging(0.663) TCGA-D3-A3MR-06 19 43679591 43679591 G A PSG5 Missense_Mutation p.S247L 0.12 tolerated(0.08) benign(0.254) TCGA-D3-A3MR-06 19 43680100 43680100 C T PSG5 Missense_Mutation p.E211K 0.16 deleterious(0.01) possibly_damaging(0.689) TCGA-D3-A3MR-06 19 43766146 43766146 C T PSG9 Missense_Mutation p.R192K 0.12 tolerated(0.29) benign(0.016) TCGA-D3-A3MR-06 19 43859874 43859874 A C CD177 3'UTR 0.07 TCGA-D3-A3MR-06 19 43920370 43920370 G A TEX101 Missense_Mutation p.E80K 0.26 deleterious(0) probably_damaging(0.988) TCGA-D3-A3MR-06 19 44056253 44056253 G A XRCC1 Missense_Mutation p.P333L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 19 44833296 44833296 G A ZNF112 Silent p.S344S 0.08 TCGA-D3-A3MR-06 19 4538235 4538235 C T LRG1 Missense_Mutation p.G254D 0.20 tolerated(0.14) possibly_damaging(0.521) TCGA-D3-A3MR-06 19 45575004 45575004 T C ZNF296 Missense_Mutation p.K428R 0.24 deleterious(0) probably_damaging(0.978) TCGA-D3-A3MR-06 19 46094957 46094957 C T GPR4 Silent p.L56L 0.28 TCGA-D3-A3MR-06 19 49364934 49364934 G A PLEKHA4 Missense_Mutation p.R70C 0.09 deleterious(0) probably_damaging(0.945) TCGA-D3-A3MR-06 19 49364935 49364935 G A PLEKHA4 Silent p.L69L 0.10 TCGA-D3-A3MR-06 19 49538858 49538858 C T CGB1 3'Flank 0.08 TCGA-D3-A3MR-06 19 49994461 49994461 C G RPL13A Intron 0.05 TCGA-D3-A3MR-06 19 50370393 50370393 G A PNKP Silent p.F23F 0.22 TCGA-D3-A3MR-06 19 50804990 50804990 C T MYH14 Silent p.L1848L 0.18 TCGA-D3-A3MR-06 19 50840341 50840341 C T NAPSB RNA 0.10 TCGA-D3-A3MR-06 19 51200372 51200372 C T SHANK1 Missense_Mutation p.D649N 0.07 benign(0.002) TCGA-D3-A3MR-06 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.16 tolerated(0.19) benign(0.004) TCGA-D3-A3MR-06 19 52249761 52249761 G A FPR1 Missense_Mutation p.R163C 0.06 deleterious(0.02) possibly_damaging(0.773) TCGA-D3-A3MR-06 19 52272677 52272677 C T FPR2 Missense_Mutation p.P256S 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A3MR-06 19 52941042 52941042 G A ZNF534 Missense_Mutation p.G123E 0.19 tolerated(0.07) probably_damaging(0.988) TCGA-D3-A3MR-06 19 53855057 53855057 C T ZNF845 Missense_Mutation p.H377Y 0.15 deleterious(0) probably_damaging(0.961) TCGA-D3-A3MR-06 19 54080023 54080023 G A ZNF331 Missense_Mutation p.R70K 0.26 tolerated(0.34) benign(0) TCGA-D3-A3MR-06 19 54080544 54080544 G A ZNF331 Missense_Mutation p.E244K 0.16 tolerated(0.21) probably_damaging(0.995) TCGA-D3-A3MR-06 19 54175230 54175230 C T MIR1323 RNA 0.17 TCGA-D3-A3MR-06 19 54177462 54177462 G A MIR498 RNA 0.08 TCGA-D3-A3MR-06 19 54445475 54445475 C T CACNG7 Silent p.I252I 0.21 TCGA-D3-A3MR-06 19 54758680 54758680 T G LILRB5 Silent p.G391G 0.06 TCGA-D3-A3MR-06 19 54782167 54782167 G A LILRB2 Missense_Mutation p.S402F 0.15 deleterious(0.02) benign(0.414) TCGA-D3-A3MR-06 19 55045210 55045210 C T KIR3DX1 Silent p.S110S 0.16 TCGA-D3-A3MR-06 19 55085958 55085958 C T LILRA2 Silent p.I87I 0.10 TCGA-D3-A3MR-06 19 55086301 55086301 C T LILRA2 Silent p.F152F 0.18 TCGA-D3-A3MR-06 19 55221458 55221458 G A AC098784.2 3'Flank 0.24 TCGA-D3-A3MR-06 19 56423515 56423515 G A NLRP13 Silent p.F556F 0.17 TCGA-D3-A3MR-06 19 56473497 56473497 G A NLRP8 Missense_Mutation p.D703N 0.06 deleterious(0.01) benign(0.104) TCGA-D3-A3MR-06 19 5667130 5667130 C T SAFB Missense_Mutation p.S803F 0.17 deleterious(0.01) unknown(0) TCGA-D3-A3MR-06 19 57286151 57286151 G A ZIM2 Nonsense_Mutation p.Q497* 0.08 TCGA-D3-A3MR-06 19 57286265 57286265 C T ZIM2 Missense_Mutation p.D459N 0.18 tolerated(0.07) benign(0.015) TCGA-D3-A3MR-06 19 57286596 57286596 C T ZIM2 Silent p.R348R 0.14 TCGA-D3-A3MR-06 19 57325567 57325567 C T PEG3 Missense_Mutation p.A1415T 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 19 58004500 58004500 G A ZNF419 Missense_Mutation p.S193N 0.10 tolerated(0.21) benign(0.003) TCGA-D3-A3MR-06 19 58190113 58190113 C T ZSCAN4 Missense_Mutation p.T381I 0.18 deleterious(0) probably_damaging(0.953) TCGA-D3-A3MR-06 19 58438694 58438694 A T ZNF418 Silent p.P285P 0.09 TCGA-D3-A3MR-06 19 58438711 58438711 G T ZNF418 Missense_Mutation p.H280N 0.09 deleterious(0.03) probably_damaging(0.941) TCGA-D3-A3MR-06 19 58723654 58723654 T C ZNF274 Silent p.D368D 0.19 TCGA-D3-A3MR-06 19 7833751 7833751 A T CLEC4M Missense_Mutation p.E359D 0.22 deleterious(0) probably_damaging(0.971) TCGA-D3-A3MR-06 19 8615459 8615459 C T MYO1F Silent p.V297V 0.14 TCGA-D3-A3MR-06 19 8651480 8651480 C T ADAMTS10 Missense_Mutation p.E789K 0.08 deleterious(0.03) possibly_damaging(0.85) TCGA-D3-A3MR-06 19 8842008 8842008 C T OR2Z1 Silent p.I206I 0.10 TCGA-D3-A3MR-06 19 9058283 9058283 C T MUC16 Silent p.V9721V 0.14 TCGA-D3-A3MR-06 19 9072326 9072326 G A MUC16 Silent p.P5040P 0.18 TCGA-D3-A3MR-06 19 9074184 9074184 G A MUC16 Missense_Mutation p.P4421L 0.19 unknown(0) TCGA-D3-A3MR-06 19 9082490 9082490 C T MUC16 Missense_Mutation p.E3109K 0.07 unknown(0) TCGA-D3-A3MR-06 19 9086743 9086743 C T MUC16 Missense_Mutation p.R1691K 0.10 unknown(0) TCGA-D3-A3MR-06 19 9204169 9204169 G A OR1M1 Silent p.V83V 0.11 TCGA-D3-A3MR-06 1 101198190 101198190 G A VCAM1 Missense_Mutation p.G581E 0.21 deleterious(0) probably_damaging(0.973) TCGA-D3-A3MR-06 1 103343610 103343610 C T COL11A1 Missense_Mutation p.G1796R 0.09 unknown(0) TCGA-D3-A3MR-06 1 103444977 103444977 G A COL11A1 Silent p.F857F 0.19 TCGA-D3-A3MR-06 1 109778669 109778669 C T SARS Missense_Mutation p.T347I 0.14 tolerated(0.09) benign(0.315) TCGA-D3-A3MR-06 1 110050909 110050909 G A AMIGO1 Missense_Mutation p.P209L 0.08 deleterious(0) probably_damaging(0.915) TCGA-D3-A3MR-06 1 110050910 110050910 G A AMIGO1 Missense_Mutation p.P209S 0.08 deleterious(0.01) possibly_damaging(0.8) TCGA-D3-A3MR-06 1 111490906 111490906 C T LRIF1 Missense_Mutation p.G662D 0.15 tolerated(0.13) benign(0) TCGA-D3-A3MR-06 1 113058942 113058942 G A WNT2B Missense_Mutation p.G195D 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 1 113232261 113232261 C T MOV10 Missense_Mutation p.P189L 0.07 tolerated(0.7) benign(0) TCGA-D3-A3MR-06 1 114372637 114372637 G A PTPN22 Missense_Mutation p.R690C 0.07 tolerated(0.07) probably_damaging(0.944) TCGA-D3-A3MR-06 1 114682476 114682476 C A SYT6 Missense_Mutation p.K6N 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3MR-06 1 11561757 11561757 C T PTCHD2 Silent p.I236I 0.27 TCGA-D3-A3MR-06 1 11562770 11562770 T C PTCHD2 Missense_Mutation p.Y378H 0.06 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 1 116225054 116225054 C T VANGL1 Silent p.L294L 0.20 TCGA-D3-A3MR-06 1 117131389 117131389 C A IGSF3 Silent p.L809L 0.19 TCGA-D3-A3MR-06 1 117660782 117660782 G A TRIM45 Missense_Mutation p.P366S 0.24 deleterious(0.03) benign(0.297) TCGA-D3-A3MR-06 1 118537050 118537050 C T SPAG17 Nonsense_Mutation p.W1719* 0.09 TCGA-D3-A3MR-06 1 12010487 12010487 T C PLOD1 Missense_Mutation p.F126L 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 1 120168736 120168736 G A ZNF697 5'UTR 0.05 TCGA-D3-A3MR-06 1 120337224 120337224 G A REG4 3'UTR 0.18 TCGA-D3-A3MR-06 1 12726256 12726256 C T AADACL4 Missense_Mutation p.S245F 0.10 tolerated(0.32) possibly_damaging(0.905) TCGA-D3-A3MR-06 1 12943054 12943054 C T PRAMEF4 Silent p.L54L 0.27 TCGA-D3-A3MR-06 1 1342292 1342292 C T MRPL20 Silent p.R65R 0.08 TCGA-D3-A3MR-06 1 145585637 145585637 G A PIAS3 3'UTR 0.14 TCGA-D3-A3MR-06 1 145608125 145608125 G A POLR3C Missense_Mutation p.P191L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 1 151261177 151261177 A G ZNF687 Silent p.G763G 0.13 TCGA-D3-A3MR-06 1 151340703 151340703 G A SELENBP1 Silent p.S151S 0.22 TCGA-D3-A3MR-06 1 151340704 151340704 G A SELENBP1 Missense_Mutation p.S151F 0.21 tolerated(0.31) benign(0.315) TCGA-D3-A3MR-06 1 152128227 152128227 G A RPTN Missense_Mutation p.H450Y 0.18 tolerated(0.06) benign(0.066) TCGA-D3-A3MR-06 1 152329565 152329565 C T FLG2 Missense_Mutation p.E233K 0.20 unknown(0) TCGA-D3-A3MR-06 1 152659675 152659675 G A LCE2B 3'UTR 0.18 TCGA-D3-A3MR-06 1 152733045 152733045 C T KPRP Silent p.I327I 0.24 TCGA-D3-A3MR-06 1 153740201 153740201 C T INTS3 Silent p.T714T 0.22 TCGA-D3-A3MR-06 1 153800796 153800796 G A GATAD2B Missense_Mutation p.R10C 0.17 deleterious(0.03) benign(0.052) TCGA-D3-A3MR-06 1 154197657 154197657 C T UBAP2L Nonsense_Mutation p.Q20* 0.16 TCGA-D3-A3MR-06 1 155240702 155240702 G A CLK2 Missense_Mutation p.R23W 0.18 tolerated(0.09) unknown(0) TCGA-D3-A3MR-06 1 155717585 155717585 C T GON4L 3'Flank 0.10 TCGA-D3-A3MR-06 1 1558805 1558805 C T MIB2 Silent p.A106A 0.35 TCGA-D3-A3MR-06 1 156641246 156641246 C T NES Missense_Mutation p.E912K 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-D3-A3MR-06 1 156906763 156906763 G A ARHGEF11 Missense_Mutation p.S1492F 0.14 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-D3-A3MR-06 1 156931484 156931484 G A ARHGEF11 Silent p.F408F 0.10 TCGA-D3-A3MR-06 1 157494336 157494336 G A FCRL5 Missense_Mutation p.R658C 0.16 deleterious(0.04) benign(0.262) TCGA-D3-A3MR-06 1 157765772 157765772 G A FCRL1 3'UTR 0.21 TCGA-D3-A3MR-06 1 157771298 157771298 G A FCRL1 Missense_Mutation p.P319L 0.14 tolerated(0.72) benign(0.013) TCGA-D3-A3MR-06 1 15793991 15793991 C T CELA2A Silent p.S250S 0.09 TCGA-D3-A3MR-06 1 158262420 158262420 C T CD1C Silent p.S215S 0.21 TCGA-D3-A3MR-06 1 158325798 158325798 C T CD1E Silent p.L269L 0.18 TCGA-D3-A3MR-06 1 158656289 158656289 C T SPTA1 Missense_Mutation p.E7K 0.15 deleterious_low_confidence(0.02) benign(0.13) TCGA-D3-A3MR-06 1 158687706 158687706 G A OR6K3 Missense_Mutation p.S67F 0.18 deleterious(0) probably_damaging(0.98) TCGA-D3-A3MR-06 1 159273834 159273834 T A FCER1A Missense_Mutation p.F65I 0.18 tolerated(0.41) benign(0.018) TCGA-D3-A3MR-06 1 159923971 159923971 C T SLAMF9 5'UTR 0.26 TCGA-D3-A3MR-06 1 160786616 160786616 G A LY9 Silent p.R435R 0.17 TCGA-D3-A3MR-06 1 160786653 160786653 G A LY9 Missense_Mutation p.G448R 0.11 tolerated(0.1) probably_damaging(0.995) TCGA-D3-A3MR-06 1 160851014 160851014 G A ITLN1 Missense_Mutation p.S165F 0.19 deleterious(0) probably_damaging(0.952) TCGA-D3-A3MR-06 1 161021228 161021228 C T ARHGAP30 Silent p.P432P 0.17 TCGA-D3-A3MR-06 1 161654785 161654785 G A RPL31P11 RNA 0.19 TCGA-D3-A3MR-06 1 161681104 161681104 C T FCRLA Silent p.Y136Y 0.17 TCGA-D3-A3MR-06 1 161681105 161681105 C T FCRLA Nonsense_Mutation p.R137* 0.17 TCGA-D3-A3MR-06 1 164789376 164789376 G A PBX1 Silent p.G355G 0.15 TCGA-D3-A3MR-06 1 167962580 167962580 C T DCAF6 Missense_Mutation p.L269F 0.18 deleterious(0) probably_damaging(0.991) TCGA-D3-A3MR-06 1 169505801 169505801 T C F5 Silent p.E1638E 0.16 TCGA-D3-A3MR-06 1 169680653 169680653 C T SELL Missense_Mutation p.G9E 0.26 tolerated_low_confidence(0.34) benign(0) TCGA-D3-A3MR-06 1 171546720 171546720 C T PRRC2C Missense_Mutation p.S2366F 0.10 probably_damaging(0.985) TCGA-D3-A3MR-06 1 172001634 172001634 C T DNM3 Missense_Mutation p.R228C 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 1 172501615 172501615 G A SUCO 5'Flank 0.12 TCGA-D3-A3MR-06 1 173596204 173596204 C T ANKRD45 Silent p.K197K 0.20 TCGA-D3-A3MR-06 1 17402195 17402195 A G PADI2 Silent p.F478F 0.15 TCGA-D3-A3MR-06 1 175086223 175086223 G A TNN Silent p.G756G 0.16 TCGA-D3-A3MR-06 1 178846721 178846721 G A RALGPS2 Missense_Mutation p.M232I 0.17 deleterious(0.02) possibly_damaging(0.543) TCGA-D3-A3MR-06 1 179364291 179364291 C T AXDND1 Missense_Mutation p.H355Y 0.16 tolerated(0.13) possibly_damaging(0.728) TCGA-D3-A3MR-06 1 179631290 179631290 G A TDRD5 Missense_Mutation p.D792N 0.17 deleterious(0.04) probably_damaging(1) TCGA-D3-A3MR-06 1 180031404 180031404 G A CEP350 Missense_Mutation p.R1771K 0.30 possibly_damaging(0.529) TCGA-D3-A3MR-06 1 184764158 184764158 C T FAM129A Missense_Mutation p.G914R 0.19 tolerated_low_confidence(0.74) benign(0) TCGA-D3-A3MR-06 1 185878571 185878571 C T HMCN1 Missense_Mutation p.P242S 0.15 probably_damaging(0.968) TCGA-D3-A3MR-06 1 19467963 19467963 G A UBR4 Missense_Mutation p.P2789L 0.07 probably_damaging(0.942) TCGA-D3-A3MR-06 1 196748424 196748424 G A CFHR3 Missense_Mutation p.G64E 0.12 tolerated(0.67) probably_damaging(0.999) TCGA-D3-A3MR-06 1 197404357 197404357 G A CRB1 Missense_Mutation p.E1122K 0.15 tolerated(0.25) benign(0.008) TCGA-D3-A3MR-06 1 200960848 200960848 C T KIF21B Silent p.Q797Q 0.17 TCGA-D3-A3MR-06 1 202288019 202288019 C T LGR6 Missense_Mutation p.S863F 0.16 deleterious(0) probably_damaging(0.982) TCGA-D3-A3MR-06 1 202288020 202288020 C T LGR6 Silent p.S863S 0.15 TCGA-D3-A3MR-06 1 204375139 204375139 G A PPP1R15B 3'UTR 0.24 TCGA-D3-A3MR-06 1 206902417 206902417 C T MAPKAPK2 Nonsense_Mutation p.R153* 0.12 TCGA-D3-A3MR-06 1 207741189 207741189 C T CR1 Missense_Mutation p.P1325S 0.07 tolerated(0.06) possibly_damaging(0.817) TCGA-D3-A3MR-06 1 207789950 207789950 T C CR1 Missense_Mutation p.L2231P 0.18 tolerated(0.19) probably_damaging(0.956) TCGA-D3-A3MR-06 1 216062196 216062196 G A USH2A Nonsense_Mutation p.Q2599* 0.17 TCGA-D3-A3MR-06 1 217688184 217688184 G A GPATCH2 Silent p.S382S 0.05 TCGA-D3-A3MR-06 1 217688185 217688185 G A GPATCH2 Missense_Mutation p.S382F 0.05 tolerated(0.28) probably_damaging(0.971) TCGA-D3-A3MR-06 1 220180604 220180604 G A EPRS Missense_Mutation p.S561L 0.07 tolerated(0.12) benign(0.003) TCGA-D3-A3MR-06 1 22216496 22216496 G A HSPG2 Silent p.F184F 0.21 TCGA-D3-A3MR-06 1 224482088 224482088 G A NVL Silent p.A402A 0.18 TCGA-D3-A3MR-06 1 228033180 228033180 C T PRSS38 Missense_Mutation p.S198L 0.09 tolerated(0.19) benign(0.039) TCGA-D3-A3MR-06 1 228462334 228462334 G A OBSCN Silent p.E2290E 0.08 TCGA-D3-A3MR-06 1 228588893 228588893 C T TRIM11 Silent p.K169K 0.07 TCGA-D3-A3MR-06 1 22902822 22902822 G A EPHA8 Missense_Mutation p.R91Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 1 231362769 231362769 C A C1orf131 Nonsense_Mutation p.G186* 0.21 TCGA-D3-A3MR-06 1 23240091 23240091 C T EPHB2 3'UTR 0.13 TCGA-D3-A3MR-06 1 233518327 233518327 C T MLK4 Missense_Mutation p.S994F 0.17 tolerated(0.71) benign(0.001) TCGA-D3-A3MR-06 1 234534127 234534127 C T TARBP1 Splice_Site p.X1415_splice 0.11 TCGA-D3-A3MR-06 1 237777717 237777717 T C RYR2 Silent p.F1763F 0.10 TCGA-D3-A3MR-06 1 240286555 240286555 G A FMN2 Silent p.R564R 0.18 TCGA-D3-A3MR-06 1 240969562 240969562 C T RGS7 Missense_Mutation p.E383K 0.10 tolerated(0.08) probably_damaging(0.99) TCGA-D3-A3MR-06 1 244218222 244218222 C T ZBTB18 Silent p.P382P 0.19 TCGA-D3-A3MR-06 1 24447645 24447645 G A IL22RA1 Nonsense_Mutation p.Q459* 0.15 TCGA-D3-A3MR-06 1 24447646 24447646 G A IL22RA1 Silent p.S458S 0.17 TCGA-D3-A3MR-06 1 24463788 24463788 C T IL22RA1 Missense_Mutation p.R63K 0.10 tolerated(1) benign(0.001) TCGA-D3-A3MR-06 1 247654807 247654807 C T OR2W5 RNA 0.15 TCGA-D3-A3MR-06 1 247769160 247769160 G A OR2G3 Silent p.T91T 0.23 TCGA-D3-A3MR-06 1 248059501 248059501 G A OR2W3 Missense_Mutation p.G205S 0.24 deleterious(0.01) possibly_damaging(0.471) TCGA-D3-A3MR-06 1 248402473 248402473 G A OR2M4 Missense_Mutation p.M81I 0.18 deleterious(0.03) benign(0.081) TCGA-D3-A3MR-06 1 249211370 249211370 G A PGBD2 Missense_Mutation p.R196K 0.17 tolerated(0.06) possibly_damaging(0.627) TCGA-D3-A3MR-06 1 27250577 27250577 C T NUDC Intron 0.10 TCGA-D3-A3MR-06 1 27875154 27875154 G T AHDC1 Missense_Mutation p.A1158D 0.19 tolerated(0.15) possibly_damaging(0.82) TCGA-D3-A3MR-06 1 28075618 28075618 C T FAM76A Silent p.I218I 0.08 TCGA-D3-A3MR-06 1 28075619 28075619 C T FAM76A Missense_Mutation p.P219S 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A3MR-06 1 28282243 28282243 A T SMPDL3B Missense_Mutation p.N247Y 0.06 tolerated(0.13) benign(0.139) TCGA-D3-A3MR-06 1 28904184 28904184 G A TRNAU1AP 3'UTR 0.23 TCGA-D3-A3MR-06 1 32205232 32205232 G A BAI2 Silent p.I724I 0.07 TCGA-D3-A3MR-06 1 32280408 32280408 C T SPOCD1 Missense_Mutation p.G176E 0.23 tolerated(0.16) benign(0.056) TCGA-D3-A3MR-06 1 32280409 32280409 C T SPOCD1 Missense_Mutation p.G176R 0.23 deleterious(0) possibly_damaging(0.823) TCGA-D3-A3MR-06 1 32842311 32842311 T A BSDC1 Silent p.P253P 0.28 TCGA-D3-A3MR-06 1 34209041 34209041 G A CSMD2 Silent p.F631F 0.07 TCGA-D3-A3MR-06 1 35864598 35864598 C T ZMYM4 Silent p.F1129F 0.11 TCGA-D3-A3MR-06 1 38287858 38287858 C T MTF1 Missense_Mutation p.G568R 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3MR-06 1 40034557 40034557 G A PABPC4 Missense_Mutation p.R265C 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A3MR-06 1 40034558 40034558 G A PABPC4 Silent p.G264G 0.09 TCGA-D3-A3MR-06 1 42628552 42628552 G A GUCA2A 3'UTR 0.33 TCGA-D3-A3MR-06 1 43783279 43783279 G A TIE1 Missense_Mutation p.E889K 0.16 deleterious(0) possibly_damaging(0.569) TCGA-D3-A3MR-06 1 47400173 47400173 G A CYP4A11 Silent p.I283I 0.08 TCGA-D3-A3MR-06 1 53543377 53543377 C T PODN Silent p.I301I 0.08 TCGA-D3-A3MR-06 1 54644969 54644969 G A CYB5RL Silent p.I199I 0.30 TCGA-D3-A3MR-06 1 55282703 55282703 G A C1orf177 Missense_Mutation p.M364I 0.19 tolerated(0.3) benign(0.104) TCGA-D3-A3MR-06 1 57399080 57399080 C T C8B Missense_Mutation p.E494K 0.10 tolerated(0.1) benign(0.127) TCGA-D3-A3MR-06 1 6228338 6228338 C T CHD5 Splice_Site p.X27_splice 0.23 TCGA-D3-A3MR-06 1 64125382 64125382 C T PGM1 3'UTR 0.21 TCGA-D3-A3MR-06 1 75042615 75042615 C T C1orf173 Missense_Mutation p.D728N 0.16 tolerated(0.66) benign(0) TCGA-D3-A3MR-06 1 75626593 75626593 G A LHX8 3'UTR 0.19 TCGA-D3-A3MR-06 1 76255701 76255701 G A RABGGTB Missense_Mutation p.G125D 0.08 tolerated(0.23) benign(0.079) TCGA-D3-A3MR-06 1 77528700 77528700 C T ST6GALNAC5 Missense_Mutation p.P274S 0.10 probably_damaging(0.94) TCGA-D3-A3MR-06 1 78430375 78430375 G A FUBP1 Missense_Mutation p.R265W 0.07 deleterious(0) probably_damaging(0.963) TCGA-D3-A3MR-06 1 809624 809624 G A FAM41C 5'Flank 0.07 TCGA-D3-A3MR-06 1 85790432 85790432 T A DDAH1 Missense_Mutation p.E244D 0.11 tolerated(0.42) benign(0.396) TCGA-D3-A3MR-06 1 86920909 86920909 C T CLCA2 Missense_Mutation p.S844F 0.15 tolerated(1) benign(0) TCGA-D3-A3MR-06 1 87104713 87104713 G A RP4-651E10.4 Intron 0.12 TCGA-D3-A3MR-06 1 879126 879126 G A SAMD11 Missense_Mutation p.E580K 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 1 89449025 89449025 G A RBMXL1 Missense_Mutation p.P162L 0.19 tolerated(0.06) benign(0.128) TCGA-D3-A3MR-06 1 89449026 89449026 G A RBMXL1 Missense_Mutation p.P162S 0.19 tolerated(0.12) benign(0.057) TCGA-D3-A3MR-06 1 89732029 89732029 G A GBP5 Missense_Mutation p.R290C 0.20 deleterious(0.04) benign(0.255) TCGA-D3-A3MR-06 1 92941724 92941724 G A GFI1 Silent p.F377F 0.10 TCGA-D3-A3MR-06 1 97658780 97658780 C T DPYD Missense_Mutation p.D823N 0.08 tolerated(0.06) benign(0.344) TCGA-D3-A3MR-06 20 23433415 23433415 G A CST11 Silent p.L12L 0.36 TCGA-D3-A3MR-06 20 34092474 34092474 C T CEP250 Missense_Mutation p.H2093Y 0.19 benign(0.001) TCGA-D3-A3MR-06 20 35060109 35060109 C T DLGAP4 5'UTR 0.16 TCGA-D3-A3MR-06 20 35579932 35579932 G A SAMHD1 Missense_Mutation p.H39Y 0.15 tolerated(0.07) benign(0.179) TCGA-D3-A3MR-06 20 35579933 35579933 G A SAMHD1 Silent p.L38L 0.15 TCGA-D3-A3MR-06 20 3655459 3655460 GG A ADAM33 Frame_Shift_Del p.P124Sfs*5 0.12 TCGA-D3-A3MR-06 20 3683907 3683907 A T SIGLEC1 Missense_Mutation p.F389I 0.21 tolerated(0.31) benign(0.214) TCGA-D3-A3MR-06 20 40770557 40770557 G A PTPRT Missense_Mutation p.S923F 0.16 deleterious(0) probably_damaging(0.952) TCGA-D3-A3MR-06 20 40944410 40944410 G A PTPRT Silent p.L698L 0.16 TCGA-D3-A3MR-06 20 42162712 42162712 C T L3MBTL1 Silent p.V504V 0.22 TCGA-D3-A3MR-06 20 42788353 42788353 C T JPH2 Silent p.K358K 0.19 TCGA-D3-A3MR-06 20 43926839 43926839 G A MATN4 Missense_Mutation p.S466L 0.21 possibly_damaging(0.491) TCGA-D3-A3MR-06 20 44596891 44596893 AGG GA ZNF335 Intron 0.13 TCGA-D3-A3MR-06 20 44750538 44750538 G A CD40 Splice_Site p.X44_splice 0.13 TCGA-D3-A3MR-06 20 44828178 44828178 G A CDH22 Missense_Mutation p.S436L 0.14 deleterious(0.02) possibly_damaging(0.489) TCGA-D3-A3MR-06 20 45014813 45014813 C A ELMO2 Missense_Mutation p.Q209H 0.12 tolerated(0.23) benign(0.009) TCGA-D3-A3MR-06 20 45853043 45853043 C T ZMYND8 Nonsense_Mutation p.W1015* 0.22 TCGA-D3-A3MR-06 20 46331287 46331287 C T SULF2 Silent p.E181E 0.25 TCGA-D3-A3MR-06 20 4778692 4778692 G A RASSF2 Silent p.Y33Y 0.17 TCGA-D3-A3MR-06 20 50768975 50768975 G A ZFP64 Missense_Mutation p.L586F 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A3MR-06 20 51870625 51870625 A G TSHZ2 Missense_Mutation p.T210A 0.18 deleterious(0) probably_damaging(0.991) TCGA-D3-A3MR-06 20 5294827 5294827 G A PROKR2 Silent p.I63I 0.24 TCGA-D3-A3MR-06 20 57768049 57768049 C T ZNF831 Missense_Mutation p.P659S 0.15 deleterious(0.01) possibly_damaging(0.863) TCGA-D3-A3MR-06 20 62275112 62275112 C T STMN3 Silent p.R96R 0.11 TCGA-D3-A3MR-06 20 62373358 62373358 C T SLC2A4RG Silent p.P176P 0.21 TCGA-D3-A3MR-06 20 62374338 62374338 G A SLC2A4RG Missense_Mutation p.D387N 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 20 62421988 62421988 G A ZBTB46 Silent p.V41V 0.16 TCGA-D3-A3MR-06 20 62871721 62871721 G A MYT1 Missense_Mutation p.D1096N 0.10 benign(0.081) TCGA-D3-A3MR-06 20 9353699 9353699 G A PLCB4 Missense_Mutation p.G231E 0.24 tolerated(0.21) possibly_damaging(0.502) TCGA-D3-A3MR-06 20 9360725 9360725 G A PLCB4 Missense_Mutation p.E257K 0.17 deleterious(0) benign(0.074) TCGA-D3-A3MR-06 21 19632568 19632568 G A CHODL Missense_Mutation p.G200E 0.23 tolerated(1) benign(0.001) TCGA-D3-A3MR-06 21 27097555 27097555 G A ATP5J Missense_Mutation p.P99S 0.11 deleterious(0) possibly_damaging(0.453) TCGA-D3-A3MR-06 21 27462274 27462274 G A APP Missense_Mutation p.P114S 0.13 deleterious(0) unknown(0) TCGA-D3-A3MR-06 21 31720888 31720888 G A KRTAP23-1 Missense_Mutation p.H13Y 0.07 tolerated_low_confidence(0.34) unknown(0) TCGA-D3-A3MR-06 21 33949022 33949022 A T TCP10L 3'UTR 0.11 TCGA-D3-A3MR-06 21 34003872 34003872 G A SYNJ1 Silent p.S1424S 0.15 TCGA-D3-A3MR-06 21 34003873 34003873 G A SYNJ1 Missense_Mutation p.S1424F 0.14 tolerated_low_confidence(0.07) benign(0.018) TCGA-D3-A3MR-06 21 39086747 39086747 C T KCNJ6 Missense_Mutation p.R238K 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 21 40190346 40190346 C T ETS2 Intron 0.17 TCGA-D3-A3MR-06 21 43338211 43338211 T C C2CD2 Intron 0.10 TCGA-D3-A3MR-06 21 43702471 43702471 G A ABCG1 Missense_Mutation p.A226T 0.12 deleterious(0.01) possibly_damaging(0.824) TCGA-D3-A3MR-06 21 44841617 44841617 G A SIK1 Silent p.L134L 0.17 TCGA-D3-A3MR-06 21 45978286 45978286 A T KRTAP10-3 Missense_Mutation p.C105S 0.08 deleterious(0.01) unknown(0) TCGA-D3-A3MR-06 21 46066996 46066996 C T KRTAP10-11 Silent p.V207V 0.08 TCGA-D3-A3MR-06 21 47831555 47831555 C T PCNT Silent p.I1856I 0.15 TCGA-D3-A3MR-06 22 21150439 21150439 G A PI4KA Silent p.L758L 0.15 TCGA-D3-A3MR-06 22 21150440 21150440 G A PI4KA Silent p.A757A 0.15 TCGA-D3-A3MR-06 22 21385729 21385729 C T SLC7A4 Missense_Mutation p.E125K 0.23 deleterious(0.03) benign(0.124) TCGA-D3-A3MR-06 22 21988812 21988812 C T CCDC116 Silent p.L192L 0.22 TCGA-D3-A3MR-06 22 23962796 23962796 G A C22orf43 Missense_Mutation p.P131S 0.04 deleterious_low_confidence(0.01) benign(0.07) TCGA-D3-A3MR-06 22 26164228 26164228 C T MYO18B Silent p.P115P 0.14 TCGA-D3-A3MR-06 22 26422498 26422498 C T MYO18B Silent p.T2186T 0.23 TCGA-D3-A3MR-06 22 38120185 38120185 C T TRIOBP Missense_Mutation p.P541L 0.07 tolerated_low_confidence(0.07) possibly_damaging(0.713) TCGA-D3-A3MR-06 22 38121818 38121818 C T TRIOBP Silent p.F1085F 0.23 TCGA-D3-A3MR-06 22 38508285 38508285 G A PLA2G6 Silent p.I768I 0.18 TCGA-D3-A3MR-06 22 40800412 40800412 C T SGSM3 Missense_Mutation p.L107F 0.23 tolerated(0.08) possibly_damaging(0.803) TCGA-D3-A3MR-06 22 42263110 42263110 C T SREBF2 Missense_Mutation p.P122S 0.05 tolerated(0.09) benign(0.001) TCGA-D3-A3MR-06 22 43089292 43089292 G A A4GALT Silent p.A222A 0.11 TCGA-D3-A3MR-06 22 47569255 47569255 C T TBC1D22A Missense_Mutation p.H514Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 22 49042449 49042449 C T FAM19A5 Silent p.D51D 0.07 TCGA-D3-A3MR-06 22 50191451 50191451 A G BRD1 Splice_Site p.X700_splice 0.08 TCGA-D3-A3MR-06 22 50315377 50315377 C T CRELD2 Missense_Mutation p.S187L 0.16 tolerated(0.09) benign(0.048) TCGA-D3-A3MR-06 2 102955354 102955354 G A IL1RL1 Missense_Mutation p.G40E 0.06 tolerated(1) benign(0.02) TCGA-D3-A3MR-06 2 110259097 110259097 C T SH3RF3 Missense_Mutation p.S833L 0.14 deleterious(0.02) probably_damaging(0.951) TCGA-D3-A3MR-06 2 110919263 110919263 G A NPHP1 Nonsense_Mutation p.R347* 0.08 TCGA-D3-A3MR-06 2 111413475 111413475 C T BUB1 Missense_Mutation p.E573K 0.12 deleterious(0.01) benign(0.345) TCGA-D3-A3MR-06 2 111551692 111551692 G A ACOXL Missense_Mutation p.G96S 0.10 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A3MR-06 2 111666393 111666393 G A ACOXL Silent p.K272K 0.10 TCGA-D3-A3MR-06 2 116599802 116599802 G A DPP10 Missense_Mutation p.G762S 0.12 tolerated(0.26) possibly_damaging(0.493) TCGA-D3-A3MR-06 2 11733176 11733176 G A GREB1 Silent p.K540K 0.19 TCGA-D3-A3MR-06 2 124979357 124979357 A C CNTNAP5 Missense_Mutation p.H53P 0.09 deleterious(0.04) benign(0) TCGA-D3-A3MR-06 2 131521406 131521406 G A AMER3 Silent p.G587G 0.17 TCGA-D3-A3MR-06 2 131984449 131984449 G A POTEE Silent p.V288V 0.05 TCGA-D3-A3MR-06 2 136594258 136594258 G A LCT Missense_Mutation p.S161F 0.12 deleterious(0.04) possibly_damaging(0.774) TCGA-D3-A3MR-06 2 137814023 137814023 C T THSD7B Missense_Mutation p.P58L 0.09 tolerated(0.09) possibly_damaging(0.851) TCGA-D3-A3MR-06 2 141027857 141027857 C T LRP1B Missense_Mutation p.G4401S 0.10 possibly_damaging(0.855) TCGA-D3-A3MR-06 2 152739827 152739827 C T CACNB4 Missense_Mutation p.D69N 0.10 deleterious(0.05) possibly_damaging(0.489) TCGA-D3-A3MR-06 2 155098601 155098601 C T GALNT13 Missense_Mutation p.H124Y 0.06 deleterious(0) possibly_damaging(0.873) TCGA-D3-A3MR-06 2 157183325 157183325 C T NR4A2 Silent p.E422E 0.13 TCGA-D3-A3MR-06 2 157186669 157186669 G A NR4A2 Silent p.S10S 0.19 TCGA-D3-A3MR-06 2 157186670 157186670 G A NR4A2 Missense_Mutation p.S10F 0.19 deleterious(0) possibly_damaging(0.707) TCGA-D3-A3MR-06 2 158182172 158182172 G A ERMN Missense_Mutation p.R8W 0.11 benign(0.056) TCGA-D3-A3MR-06 2 158290911 158290911 C T CYTIP Missense_Mutation p.D84N 0.09 deleterious(0.01) benign(0.086) TCGA-D3-A3MR-06 2 162735658 162735658 G A SLC4A10 Missense_Mutation p.M322I 0.07 deleterious(0.03) probably_damaging(0.985) TCGA-D3-A3MR-06 2 166451662 166451662 C T CSRNP3 Silent p.S29S 0.17 TCGA-D3-A3MR-06 2 168104735 168104735 C T XIRP2 Missense_Mutation p.P2278L 0.12 benign(0.009) TCGA-D3-A3MR-06 2 168106707 168106707 G A XIRP2 Silent p.R2935R 0.10 TCGA-D3-A3MR-06 2 174228136 174228136 T G CDCA7 Missense_Mutation p.S189R 0.15 tolerated(0.2) benign(0.037) TCGA-D3-A3MR-06 2 17773479 17773479 G A VSNL1 Silent p.E46E 0.10 TCGA-D3-A3MR-06 2 17773481 17773481 A T VSNL1 Missense_Mutation p.E47V 0.10 deleterious(0) benign(0.376) TCGA-D3-A3MR-06 2 179410188 179410188 C T TTN Silent p.V31883V 0.09 TCGA-D3-A3MR-06 2 179411970 179411970 G A TTN Missense_Mutation p.R31428C 0.10 TCGA-D3-A3MR-06 2 179439664 179439664 C T TTN Missense_Mutation p.G23732E 0.17 TCGA-D3-A3MR-06 2 179465768 179465768 C T TTN Nonsense_Mutation p.W18621* 0.05 TCGA-D3-A3MR-06 2 179465769 179465769 C T TTN Nonsense_Mutation p.W18621* 0.05 TCGA-D3-A3MR-06 2 179481477 179481477 C T TTN Missense_Mutation p.E16047K 0.11 TCGA-D3-A3MR-06 2 179486322 179486322 C T TTN Missense_Mutation p.E15077K 0.08 TCGA-D3-A3MR-06 2 179486677 179486677 G A TTN Missense_Mutation p.S14991F 0.14 TCGA-D3-A3MR-06 2 179542492 179542492 C T TTN Missense_Mutation p.E11383K 0.10 TCGA-D3-A3MR-06 2 179542556 179542556 C T TTN Silent p.E11361E 0.09 TCGA-D3-A3MR-06 2 179545869 179545869 C T TTN Missense_Mutation p.E11093K 0.13 TCGA-D3-A3MR-06 2 179582291 179582291 G A TTN Missense_Mutation p.P8437L 0.10 TCGA-D3-A3MR-06 2 179583665 179583665 C T TTN Missense_Mutation p.E8088K 0.13 TCGA-D3-A3MR-06 2 179587534 179587534 C T TTN Silent p.R7364R 0.12 TCGA-D3-A3MR-06 2 179718195 179718195 C T CCDC141 Missense_Mutation p.A1073T 0.09 deleterious(0) benign(0.098) TCGA-D3-A3MR-06 2 182360647 182360647 A C ITGA4 Missense_Mutation p.E508A 0.10 tolerated(0.17) benign(0.009) TCGA-D3-A3MR-06 2 185802688 185802688 G A ZNF804A Silent p.E855E 0.08 TCGA-D3-A3MR-06 2 187698702 187698702 G A ZSWIM2 Missense_Mutation p.H267Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 2 189449114 189449114 T C GULP1 Silent p.S244S 0.12 TCGA-D3-A3MR-06 2 19553113 19553113 C T OSR1 Missense_Mutation p.D152N 0.10 tolerated(0.27) benign(0.001) TCGA-D3-A3MR-06 2 197511090 197511090 G A CCDC150 Missense_Mutation p.R13K 0.11 deleterious(0.05) probably_damaging(0.993) TCGA-D3-A3MR-06 2 198363463 198363463 C T HSPD1 Missense_Mutation p.R37Q 0.09 tolerated(0.05) benign(0.038) TCGA-D3-A3MR-06 2 201521584 201521584 T C AOX1 Missense_Mutation p.I1032T 0.12 deleterious(0) possibly_damaging(0.864) TCGA-D3-A3MR-06 2 210559080 210559080 C T MAP2 Missense_Mutation p.S729F 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 2 212812196 212812196 C T ERBB4 Missense_Mutation p.G127E 0.11 tolerated(0.18) benign(0.093) TCGA-D3-A3MR-06 2 216239936 216239936 C T FN1 Splice_Site p.X2053_splice 0.07 TCGA-D3-A3MR-06 2 222291222 222291222 A G EPHA4 Silent p.G936G 0.20 TCGA-D3-A3MR-06 2 227919415 227919415 C T COL4A4 Missense_Mutation p.E919K 0.10 unknown(0) TCGA-D3-A3MR-06 2 230377642 230377642 G A DNER Missense_Mutation p.S335F 0.12 tolerated(1) benign(0.003) TCGA-D3-A3MR-06 2 230683105 230683105 G A TRIP12 Missense_Mutation p.P477L 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 2 233407617 233407617 C T CHRNG Silent p.H210H 0.09 TCGA-D3-A3MR-06 2 233407618 233407618 C T CHRNG Nonsense_Mutation p.R211* 0.09 TCGA-D3-A3MR-06 2 233715038 233715038 C T GIGYF2 Nonsense_Mutation p.Q1272* 0.08 TCGA-D3-A3MR-06 2 234345049 234345049 C G DGKD Missense_Mutation p.R261G 0.13 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 2 234526431 234526431 G A UGT1A8 Silent p.G26G 0.13 TCGA-D3-A3MR-06 2 234581022 234581022 G A UGT1A9 Missense_Mutation p.D148N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3MR-06 2 234638043 234638043 C T UGT1A3 Missense_Mutation p.R91C 0.11 tolerated(0.05) possibly_damaging(0.67) TCGA-D3-A3MR-06 2 240036809 240036809 G A HDAC4 Silent p.P572P 0.09 TCGA-D3-A3MR-06 2 24303690 24303690 T - TP53I3 Frame_Shift_Del p.G207Vfs*8 0.10 TCGA-D3-A3MR-06 2 27167672 27167672 A C DPYSL5 Missense_Mutation p.E530A 0.04 deleterious(0.03) benign(0.129) TCGA-D3-A3MR-06 2 27325067 27325067 G A CGREF1 Silent p.L80L 0.15 TCGA-D3-A3MR-06 2 27425705 27425705 G A SLC5A6 Silent p.S417S 0.05 TCGA-D3-A3MR-06 2 27703012 27703012 G A IFT172 Missense_Mutation p.R264W 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 2 27800836 27800836 G A C2orf16 Missense_Mutation p.G466E 0.13 tolerated(0.21) benign(0.018) TCGA-D3-A3MR-06 2 33810001 33810001 G A FAM98A Missense_Mutation p.R467C 0.08 tolerated_low_confidence(0.1) unknown(0) TCGA-D3-A3MR-06 2 37265141 37265141 G A HEATR5B Missense_Mutation p.R1025C 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 2 39944168 39944168 C T TMEM178A Missense_Mutation p.S224F 0.10 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A3MR-06 2 48807854 48807854 C T STON1-GTF2A1L Missense_Mutation p.P28S 0.18 tolerated(0.13) possibly_damaging(0.735) TCGA-D3-A3MR-06 2 48809129 48809129 G A STON1-GTF2A1L Missense_Mutation p.E453K 0.07 deleterious(0) possibly_damaging(0.827) TCGA-D3-A3MR-06 2 49189956 49189956 C T FSHR Silent p.R668R 0.12 TCGA-D3-A3MR-06 2 54081467 54081467 G A GPR75 Missense_Mutation p.R143W 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 2 60695878 60695878 G A BCL11A Missense_Mutation p.P159L 0.09 tolerated(0.07) benign(0.002) TCGA-D3-A3MR-06 2 69397421 69397421 G A ANTXR1 Silent p.E363E 0.14 TCGA-D3-A3MR-06 2 71576996 71576996 C T ZNF638 Silent p.V304V 0.09 TCGA-D3-A3MR-06 2 71576997 71576997 C T ZNF638 Missense_Mutation p.L305F 0.09 deleterious(0.03) benign(0.124) TCGA-D3-A3MR-06 2 71892430 71892430 G A DYSF Silent p.E1771E 0.14 TCGA-D3-A3MR-06 2 73188368 73188368 G A SFXN5 Silent p.L279L 0.14 TCGA-D3-A3MR-06 2 73680711 73680711 T C ALMS1 Missense_Mutation p.F2352L 0.11 probably_damaging(0.948) TCGA-D3-A3MR-06 2 80136772 80136772 C T CTNNA2 Missense_Mutation p.S302F 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-D3-A3MR-06 2 80136773 80136773 C T CTNNA2 Silent p.S302S 0.09 TCGA-D3-A3MR-06 2 86839324 86839324 A G RNF103 Missense_Mutation p.F147S 0.06 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MR-06 2 88478395 88478395 C T THNSL2 Missense_Mutation p.S222L 0.10 deleterious(0) probably_damaging(0.993) TCGA-D3-A3MR-06 2 97370254 97370254 C T LMAN2L 3'Flank 0.09 TCGA-D3-A3MR-06 2 99291500 99291500 C A MGAT4A Missense_Mutation p.G134V 0.06 deleterious(0) possibly_damaging(0.595) TCGA-D3-A3MR-06 3 105243202 105243202 G A ALCAM Missense_Mutation p.D82N 0.12 tolerated(0.13) benign(0.052) TCGA-D3-A3MR-06 3 108330161 108330161 C T DZIP3 Silent p.S81S 0.21 TCGA-D3-A3MR-06 3 108812284 108812284 C T MORC1 Missense_Mutation p.D230N 0.17 tolerated(0.26) benign(0.062) TCGA-D3-A3MR-06 3 119812191 119812191 C T GSK3B Intron 0.17 TCGA-D3-A3MR-06 3 120998649 120998649 T A STXBP5L Intron 0.21 TCGA-D3-A3MR-06 3 121647845 121647845 C T SLC15A2 Missense_Mutation p.S453F 0.14 tolerated(0.13) benign(0.014) TCGA-D3-A3MR-06 3 122418559 122418559 T C PARP14 Silent p.D386D 0.15 TCGA-D3-A3MR-06 3 123333000 123333000 C T MYLK Silent p.V1899V 0.17 TCGA-D3-A3MR-06 3 124729387 124729387 G A HEG1 Missense_Mutation p.A990V 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-D3-A3MR-06 3 12854889 12854889 T C CAND2 Splice_Site p.X336_splice 0.20 TCGA-D3-A3MR-06 3 129156739 129156739 C T MBD4 Missense_Mutation p.M53I 0.16 tolerated(0.23) benign(0.002) TCGA-D3-A3MR-06 3 130293212 130293212 C T COL6A6 Silent p.I1130I 0.16 TCGA-D3-A3MR-06 3 132047117 132047117 C T ACPP Missense_Mutation p.R43W 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 3 132071617 132071617 C T ACPP Silent p.L306L 0.15 TCGA-D3-A3MR-06 3 133473506 133473506 C T TF Missense_Mutation p.L165F 0.17 deleterious(0.03) possibly_damaging(0.729) TCGA-D3-A3MR-06 3 134968304 134968304 C T EPHB1 Silent p.S939S 0.13 TCGA-D3-A3MR-06 3 140251231 140251231 G A CLSTN2 Missense_Mutation p.M470I 0.12 deleterious(0.03) benign(0.005) TCGA-D3-A3MR-06 3 140284901 140284901 G A CLSTN2 Missense_Mutation p.E892K 0.15 tolerated(0.07) benign(0.089) TCGA-D3-A3MR-06 3 141162981 141162981 C T ZBTB38 Missense_Mutation p.S584F 0.17 deleterious(0) possibly_damaging(0.649) TCGA-D3-A3MR-06 3 142030480 142030480 G A XRN1 Missense_Mutation p.S1665F 0.15 deleterious_low_confidence(0.01) benign(0.281) TCGA-D3-A3MR-06 3 142521062 142521062 C T TRPC1 Missense_Mutation p.L545F 0.13 tolerated(0.26) possibly_damaging(0.843) TCGA-D3-A3MR-06 3 150264576 150264576 C T EIF2A 5'UTR 0.17 TCGA-D3-A3MR-06 3 150264577 150264577 T C EIF2A 5'UTR 0.17 TCGA-D3-A3MR-06 3 151161580 151161580 C T IGSF10 Missense_Mutation p.G1719R 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 3 151545384 151545384 C T AADAC Silent p.V208V 0.11 TCGA-D3-A3MR-06 3 151599072 151599072 C T SUCNR1 Silent p.P247P 0.13 TCGA-D3-A3MR-06 3 15311315 15311315 C T SH3BP5 Missense_Mutation p.E134K 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A3MR-06 3 155200113 155200113 A G PLCH1 Silent p.F1242F 0.12 TCGA-D3-A3MR-06 3 155203396 155203396 C T PLCH1 Missense_Mutation p.R916K 0.15 deleterious(0.04) benign(0.021) TCGA-D3-A3MR-06 3 155571322 155571322 C A SLC33A1 Missense_Mutation p.M155I 0.13 deleterious(0.01) possibly_damaging(0.643) TCGA-D3-A3MR-06 3 164783075 164783075 A G SI Missense_Mutation p.F261L 0.17 deleterious(0.01) benign(0.417) TCGA-D3-A3MR-06 3 164905637 164905637 C T SLITRK3 3'UTR 0.14 TCGA-D3-A3MR-06 3 167245759 167245759 G A WDR49 Missense_Mutation p.T466I 0.12 deleterious(0.03) benign(0.303) TCGA-D3-A3MR-06 3 167525048 167525048 G A SERPINI1 Missense_Mutation p.E300K 0.13 tolerated(1) benign(0.009) TCGA-D3-A3MR-06 3 169664489 169664489 C T RP11-379K17.4 RNA 0.17 TCGA-D3-A3MR-06 3 170805155 170805155 G A TNIK Silent p.S954S 0.13 TCGA-D3-A3MR-06 3 178543421 178543421 G A KCNMB2 Silent p.R34R 0.12 TCGA-D3-A3MR-06 3 178968781 178968781 C T KCNMB3 Intron 0.15 TCGA-D3-A3MR-06 3 180319960 180319960 C T TTC14 5'UTR 0.12 TCGA-D3-A3MR-06 3 183696314 183696314 C T ABCC5 Missense_Mutation p.G425S 0.19 tolerated(0.05) probably_damaging(0.911) TCGA-D3-A3MR-06 3 183887886 183887886 C T DVL3 Missense_Mutation p.P531S 0.16 deleterious(0.02) possibly_damaging(0.876) TCGA-D3-A3MR-06 3 184008046 184008046 G A ECE2 Missense_Mutation p.E637K 0.16 tolerated(0.24) benign(0.212) TCGA-D3-A3MR-06 3 184103938 184103938 C T CHRD Silent p.L641L 0.23 TCGA-D3-A3MR-06 3 185906104 185906104 G A DGKG Missense_Mutation p.P661L 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 3 186572004 186572004 A G ADIPOQ Silent p.E82E 0.13 TCGA-D3-A3MR-06 3 186953605 186953605 G A MASP1 Missense_Mutation p.S685F 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 3 189704627 189704627 C T LEPREL1 Missense_Mutation p.E380K 0.18 tolerated(0.32) benign(0.013) TCGA-D3-A3MR-06 3 193130071 193130071 C T ATP13A4 Missense_Mutation p.S1035N 0.14 tolerated(0.57) probably_damaging(0.931) TCGA-D3-A3MR-06 3 193209121 193209121 C T ATP13A4 Silent p.K200K 0.18 TCGA-D3-A3MR-06 3 195493607 195493607 G A MUC4 Silent p.F4515F 0.18 TCGA-D3-A3MR-06 3 196215503 196215503 C T RNF168 Missense_Mutation p.R118K 0.21 tolerated(0.29) benign(0.013) TCGA-D3-A3MR-06 3 197238997 197238997 G A BDH1 Silent p.V267V 0.22 TCGA-D3-A3MR-06 3 27333070 27333070 G A NEK10 Missense_Mutation p.P461S 0.14 tolerated(0.07) possibly_damaging(0.858) TCGA-D3-A3MR-06 3 3078995 3078995 G A CNTN4 Missense_Mutation p.R692Q 0.18 tolerated(0.11) benign(0.034) TCGA-D3-A3MR-06 3 38892012 38892012 C T SCN11A Nonsense_Mutation p.W1429* 0.15 TCGA-D3-A3MR-06 3 39229628 39229628 C T XIRP1 Missense_Mutation p.D437N 0.14 deleterious(0.03) possibly_damaging(0.841) TCGA-D3-A3MR-06 3 39229653 39229653 G A XIRP1 Silent p.A428A 0.22 TCGA-D3-A3MR-06 3 39230485 39230485 C T XIRP1 Missense_Mutation p.G151E 0.12 deleterious(0) probably_damaging(0.99) TCGA-D3-A3MR-06 3 42950300 42950300 C T ZNF662 Missense_Mutation p.P77L 0.18 tolerated(0.87) probably_damaging(0.999) TCGA-D3-A3MR-06 3 43647320 43647320 C T ANO10 Missense_Mutation p.D9N 0.17 deleterious(0) benign(0.08) TCGA-D3-A3MR-06 3 44491944 44491944 G A ZNF445 Missense_Mutation p.S272F 0.20 deleterious(0.01) possibly_damaging(0.788) TCGA-D3-A3MR-06 3 44952563 44952563 G A TGM4 Missense_Mutation p.E574K 0.23 deleterious(0.01) benign(0.177) TCGA-D3-A3MR-06 3 45823576 45823576 G A SLC6A20 Silent p.V87V 0.23 TCGA-D3-A3MR-06 3 46450627 46450627 G A CCRL2 3'UTR 0.12 TCGA-D3-A3MR-06 3 47814372 47814372 G A SMARCC1 Missense_Mutation p.L84F 0.14 tolerated(0.2) benign(0.216) TCGA-D3-A3MR-06 3 49321500 49321500 G A USP4 Silent p.I820I 0.17 TCGA-D3-A3MR-06 3 52027815 52027815 G A RPL29 Missense_Mutation p.P144S 0.21 tolerated(0.16) possibly_damaging(0.672) TCGA-D3-A3MR-06 3 52403858 52403858 C T DNAH1 Silent p.F1987F 0.13 TCGA-D3-A3MR-06 3 52456844 52456844 G A PHF7 Missense_Mutation p.R289K 0.19 tolerated(0.8) benign(0.004) TCGA-D3-A3MR-06 3 52456878 52456878 T C PHF7 Silent p.C300C 0.12 TCGA-D3-A3MR-06 3 52554681 52554681 G A STAB1 Silent p.L1891L 0.05 TCGA-D3-A3MR-06 3 52557975 52557975 G A STAB1 Missense_Mutation p.G2495E 0.12 deleterious(0) possibly_damaging(0.776) TCGA-D3-A3MR-06 3 53215257 53215257 C T PRKCD Missense_Mutation p.S117F 0.20 tolerated(0.06) benign(0.418) TCGA-D3-A3MR-06 3 53774333 53774333 C T CACNA1D Silent p.F946F 0.18 TCGA-D3-A3MR-06 3 56667389 56667389 C G FAM208A Missense_Mutation p.D1144H 0.19 deleterious(0) possibly_damaging(0.866) TCGA-D3-A3MR-06 3 59737917 59737917 G A FHIT 3'UTR 0.28 TCGA-D3-A3MR-06 3 65415770 65415770 G T MAGI1 Missense_Mutation p.T531K 0.18 deleterious(0) probably_damaging(0.971) TCGA-D3-A3MR-06 3 65607709 65607709 C T MAGI1 Missense_Mutation p.G123E 0.09 deleterious(0) possibly_damaging(0.813) TCGA-D3-A3MR-06 3 75986677 75986677 G A ROBO2 Silent p.R11R 0.09 TCGA-D3-A3MR-06 3 7620811 7620811 C T GRM7 Missense_Mutation p.P740S 0.24 deleterious(0.03) possibly_damaging(0.777) TCGA-D3-A3MR-06 3 77147360 77147360 C T ROBO2 Missense_Mutation p.P102L 0.23 deleterious(0) unknown(0) TCGA-D3-A3MR-06 3 9543941 9543941 C T LHFPL4 Missense_Mutation p.G233E 0.10 tolerated(0.06) benign(0.04) TCGA-D3-A3MR-06 3 96963089 96963089 C T EPHA6 Missense_Mutation p.P522S 0.15 tolerated(0.06) possibly_damaging(0.487) TCGA-D3-A3MR-06 3 97851645 97851645 A T OR5H1 Missense_Mutation p.Y35F 0.15 deleterious(0.01) benign(0.32) TCGA-D3-A3MR-06 3 98002224 98002224 G A OR5H2 Missense_Mutation p.E165K 0.12 tolerated(0.13) benign(0.022) TCGA-D3-A3MR-06 3 9876553 9876553 G A TTLL3 Missense_Mutation p.D772N 0.22 deleterious_low_confidence(0) benign(0.288) TCGA-D3-A3MR-06 4 104081839 104081839 G A CENPE Silent p.V743V 0.15 TCGA-D3-A3MR-06 4 120079255 120079255 C T MYOZ2 Missense_Mutation p.P109S 0.21 tolerated(0.12) possibly_damaging(0.53) TCGA-D3-A3MR-06 4 120425692 120425692 C T PDE5A Missense_Mutation p.R777Q 0.17 tolerated(0.16) benign(0.071) TCGA-D3-A3MR-06 4 123249258 123249258 G A KIAA1109 Splice_Site p.X3666_splice 0.24 TCGA-D3-A3MR-06 4 13339612 13339612 G A HSP90AB2P RNA 0.18 TCGA-D3-A3MR-06 4 141578292 141578292 G A TBC1D9 Missense_Mutation p.P766S 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-D3-A3MR-06 4 142640628 142640628 C T IL15 Missense_Mutation p.S4L 0.26 tolerated(0.87) benign(0.001) TCGA-D3-A3MR-06 4 145629453 145629453 G A HHIP Missense_Mutation p.D431N 0.27 tolerated(1) benign(0.003) TCGA-D3-A3MR-06 4 164247398 164247398 C T NPY1R Missense_Mutation p.M103I 0.24 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 4 183574987 183574987 G A TENM3 Missense_Mutation p.G351E 0.25 deleterious(0) probably_damaging(0.931) TCGA-D3-A3MR-06 4 183714469 183714469 G A TENM3 Missense_Mutation p.R2215Q 0.19 deleterious(0.04) possibly_damaging(0.602) TCGA-D3-A3MR-06 4 184931631 184931631 C T STOX2 Missense_Mutation p.S547L 0.23 tolerated(0.06) benign(0) TCGA-D3-A3MR-06 4 20530690 20530690 C T SLIT2 Silent p.I527I 0.27 TCGA-D3-A3MR-06 4 2513704 2513704 C T RNF4 Intron 0.17 TCGA-D3-A3MR-06 4 2906795 2906795 C T ADD1 Missense_Mutation p.S489L 0.23 tolerated(0.05) probably_damaging(0.975) TCGA-D3-A3MR-06 4 46737025 46737025 C T COX7B2 Missense_Mutation p.G62E 0.16 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A3MR-06 4 47574946 47574946 C T ATP10D Missense_Mutation p.L1100F 0.18 deleterious(0.03) possibly_damaging(0.728) TCGA-D3-A3MR-06 4 55131050 55131050 G A PDGFRA Intron 0.10 TCGA-D3-A3MR-06 4 70710060 70710060 C T SULT1E1 Splice_Site p.X198_splice 0.25 TCGA-D3-A3MR-06 4 74285296 74285296 C T ALB Silent p.F575F 0.19 TCGA-D3-A3MR-06 4 7666117 7666117 C T SORCS2 Silent p.S330S 0.13 TCGA-D3-A3MR-06 4 8293230 8293230 G A HTRA3 Missense_Mutation p.G281D 0.25 deleterious(0) probably_damaging(0.986) TCGA-D3-A3MR-06 4 99325744 99325744 G A RAP1GDS1 Missense_Mutation p.A253T 0.06 tolerated(0.07) probably_damaging(0.958) TCGA-D3-A3MR-06 5 100152214 100152214 G A ST8SIA4 Intron 0.17 TCGA-D3-A3MR-06 5 118813129 118813129 C T HSD17B4 Missense_Mutation p.H148Y 0.11 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MR-06 5 121488400 121488400 C T ZNF474 Missense_Mutation p.H239Y 0.12 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MR-06 5 133914515 133914515 G A JADE2 Silent p.K627K 0.13 TCGA-D3-A3MR-06 5 137045491 137045491 G A KLHL3 Silent p.A63A 0.10 TCGA-D3-A3MR-06 5 139725585 139725585 G A HBEGF Missense_Mutation p.T44I 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A3MR-06 5 140222651 140222651 C A PCDHA8 Missense_Mutation p.P582Q 0.13 deleterious_low_confidence(0.04) benign(0.352) TCGA-D3-A3MR-06 5 140262024 140262024 G A PCDHA13 Silent p.A57A 0.09 TCGA-D3-A3MR-06 5 140262025 140262025 G A PCDHA13 Missense_Mutation p.E58K 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-D3-A3MR-06 5 140262982 140262982 C T PCDHA13 Missense_Mutation p.R377C 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.489) TCGA-D3-A3MR-06 5 140480437 140480437 C T PCDHB3 Silent p.S68S 0.09 TCGA-D3-A3MR-06 5 140517365 140517365 G A PCDHB5 Silent p.G783G 0.10 TCGA-D3-A3MR-06 5 140579624 140579624 G A PCDHB11 Missense_Mutation p.E93K 0.11 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-D3-A3MR-06 5 140626848 140626848 G A PCDHB15 Missense_Mutation p.G568S 0.10 tolerated_low_confidence(0.07) benign(0.064) TCGA-D3-A3MR-06 5 140720650 140720650 C T PCDHGA2 Silent p.F704F 0.10 TCGA-D3-A3MR-06 5 140755265 140755265 G T PCDHGA6 Missense_Mutation p.D539Y 0.10 deleterious_low_confidence(0.01) benign(0.114) TCGA-D3-A3MR-06 5 14610325 14610325 G A FAM105A Missense_Mutation p.D325N 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 5 147019247 147019247 G A JAKMIP2 Missense_Mutation p.A493V 0.20 deleterious(0) probably_damaging(0.98) TCGA-D3-A3MR-06 5 148596539 148596539 C T ABLIM3 Silent p.Y229Y 0.12 TCGA-D3-A3MR-06 5 150071431 150071431 T C RBM22 Missense_Mutation p.H382R 0.09 tolerated(0.42) benign(0.007) TCGA-D3-A3MR-06 5 150310937 150310937 C T ZNF300P1 RNA 0.07 TCGA-D3-A3MR-06 5 150945927 150945927 G A FAT2 Missense_Mutation p.R856C 0.10 benign(0.082) TCGA-D3-A3MR-06 5 154394380 154394380 G A KIF4B Missense_Mutation p.E321K 0.07 deleterious(0) possibly_damaging(0.896) TCGA-D3-A3MR-06 5 156378601 156378601 T C TIMD4 Missense_Mutation p.T201A 0.10 tolerated(0.34) benign(0.112) TCGA-D3-A3MR-06 5 156390187 156390187 A T TIMD4 Missense_Mutation p.L8H 0.14 deleterious(0) probably_damaging(0.994) TCGA-D3-A3MR-06 5 156816385 156816385 C T CYFIP2 Silent p.A1106A 0.15 TCGA-D3-A3MR-06 5 16067851 16067851 C T MARCH11 Missense_Mutation p.R313Q 0.20 tolerated(0.63) benign(0.089) TCGA-D3-A3MR-06 5 161281227 161281227 G A GABRA1 Silent p.L46L 0.09 TCGA-D3-A3MR-06 5 161309653 161309653 C T GABRA1 Nonsense_Mutation p.Q217* 0.11 TCGA-D3-A3MR-06 5 161324335 161324336 - T GABRA1 Frame_Shift_Ins p.L429Afs*7 0.08 TCGA-D3-A3MR-06 5 16680143 16680143 G A MYO10 Silent p.A1485A 0.12 TCGA-D3-A3MR-06 5 16681582 16681582 G A MYO10 Missense_Mutation p.P1407L 0.10 tolerated(0.1) probably_damaging(0.939) TCGA-D3-A3MR-06 5 167489207 167489207 C T TENM2 Silent p.S484S 0.13 TCGA-D3-A3MR-06 5 169535371 169535371 C T FOXI1 Missense_Mutation p.P298L 0.12 deleterious(0.04) benign(0.03) TCGA-D3-A3MR-06 5 176011587 176011587 G A CDHR2 Missense_Mutation p.E769K 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A3MR-06 5 178140378 178140378 G C ZNF354A Missense_Mutation p.N167K 0.05 deleterious(0.03) benign(0.097) TCGA-D3-A3MR-06 5 178551987 178551987 C T ADAMTS2 Missense_Mutation p.G982E 0.15 tolerated(0.05) probably_damaging(1) TCGA-D3-A3MR-06 5 180048053 180048053 C T FLT4 Intron 0.14 TCGA-D3-A3MR-06 5 24488005 24488005 C A CDH10 Missense_Mutation p.D712Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 5 24488006 24488006 C T CDH10 Silent p.R711R 0.11 TCGA-D3-A3MR-06 5 35910596 35910596 C T CAPSL Missense_Mutation p.E63K 0.24 deleterious(0.02) possibly_damaging(0.877) TCGA-D3-A3MR-06 5 38403897 38403897 G A EGFLAM Intron 0.19 TCGA-D3-A3MR-06 5 38407152 38407152 C T EGFLAM Missense_Mutation p.L351F 0.09 tolerated(0.41) benign(0.003) TCGA-D3-A3MR-06 5 38921764 38921764 C T OSMR Silent p.L545L 0.23 TCGA-D3-A3MR-06 5 43245819 43245819 C T NIM1K 5'UTR 0.09 TCGA-D3-A3MR-06 5 5186263 5186263 G A ADAMTS16 Missense_Mutation p.E288K 0.08 tolerated(0.58) benign(0.002) TCGA-D3-A3MR-06 5 71528350 71528350 C T MRPS27 Missense_Mutation p.E171K 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 5 78181624 78181624 C T ARSB Missense_Mutation p.G309S 0.06 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 5 78260239 78260239 C T ARSB Silent p.K230K 0.11 TCGA-D3-A3MR-06 5 78340189 78340189 G A DMGDH Missense_Mutation p.P311L 0.14 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 5 79026497 79026497 G A CMYA5 Missense_Mutation p.E637K 0.14 benign(0.036) TCGA-D3-A3MR-06 5 90106986 90106986 C T GPR98 Silent p.F5303F 0.19 TCGA-D3-A3MR-06 5 96031510 96031510 C T CAST Intron 0.14 TCGA-D3-A3MR-06 6 10912933 10912933 G A SYCP2L Missense_Mutation p.E316K 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 6 110620208 110620208 G A METTL24 Missense_Mutation p.P235S 0.13 tolerated(0.07) benign(0.099) TCGA-D3-A3MR-06 6 111672892 111672892 G A REV3L Silent p.I2429I 0.24 TCGA-D3-A3MR-06 6 114384022 114384022 A G HS3ST5 5'UTR 0.23 TCGA-D3-A3MR-06 6 116833380 116833380 C T FAM26E Missense_Mutation p.S174F 0.16 tolerated(0.74) possibly_damaging(0.637) TCGA-D3-A3MR-06 6 117679018 117679018 A G ROS1 Missense_Mutation p.I1268T 0.24 tolerated(0.07) benign(0.007) TCGA-D3-A3MR-06 6 119324127 119324127 T G FAM184A Missense_Mutation p.K675N 0.22 deleterious(0) probably_damaging(0.967) TCGA-D3-A3MR-06 6 12164439 12164439 C T HIVEP1 Silent p.D2634D 0.17 TCGA-D3-A3MR-06 6 126296103 126296103 C T HINT3 Missense_Mutation p.S167F 0.22 deleterious(0) possibly_damaging(0.753) TCGA-D3-A3MR-06 6 133802642 133802642 G A EYA4 Missense_Mutation p.D338N 0.24 deleterious(0.04) possibly_damaging(0.549) TCGA-D3-A3MR-06 6 136597537 136597537 C T BCLAF1 Missense_Mutation p.E376K 0.06 tolerated(0.2) benign(0.025) TCGA-D3-A3MR-06 6 138640956 138640956 C T KIAA1244 Missense_Mutation p.H1531Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 6 139564297 139564297 G A TXLNB Missense_Mutation p.S474F 0.19 deleterious(0) possibly_damaging(0.781) TCGA-D3-A3MR-06 6 144086473 144086473 G A PHACTR2 Missense_Mutation p.R257H 0.09 tolerated_low_confidence(0.48) benign(0.006) TCGA-D3-A3MR-06 6 152201873 152201873 C T ESR1 Missense_Mutation p.R243C 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 6 152652694 152652694 G A SYNE1 Missense_Mutation p.P4376S 0.22 probably_damaging(0.974) TCGA-D3-A3MR-06 6 152730297 152730297 C T SYNE1 Missense_Mutation p.G2149E 0.16 possibly_damaging(0.807) TCGA-D3-A3MR-06 6 152771891 152771891 G A SYNE1 Silent p.L1088L 0.23 TCGA-D3-A3MR-06 6 161006178 161006178 G A LPA Nonsense_Mutation p.R1397* 0.22 TCGA-D3-A3MR-06 6 165693599 165693599 C T C6orf118 Missense_Mutation p.G453R 0.23 tolerated_low_confidence(0.35) benign(0.126) TCGA-D3-A3MR-06 6 165846588 165846588 C T PDE10A Silent p.L189L 0.17 TCGA-D3-A3MR-06 6 169051358 169051358 C T SMOC2 Intron 0.22 TCGA-D3-A3MR-06 6 170892764 170892764 C T PDCD2 Missense_Mutation p.E119K 0.10 tolerated(0.44) benign(0.104) TCGA-D3-A3MR-06 6 17608469 17608469 T G FAM8A1 Missense_Mutation p.F381V 0.06 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A3MR-06 6 24596654 24596654 G A KIAA0319 Missense_Mutation p.P83L 0.23 tolerated(0.36) benign(0.005) TCGA-D3-A3MR-06 6 27222476 27222476 C T PRSS16 Silent p.V385V 0.17 TCGA-D3-A3MR-06 6 27879707 27879707 G A OR2B2 Missense_Mutation p.H131Y 0.14 deleterious(0.01) benign(0.013) TCGA-D3-A3MR-06 6 28327463 28327463 T G ZKSCAN3 Missense_Mutation p.F34V 0.12 tolerated(0.33) benign(0) TCGA-D3-A3MR-06 6 28971362 28971362 A G ZNF311 Silent p.L7L 0.14 TCGA-D3-A3MR-06 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.22 TCGA-D3-A3MR-06 6 29079798 29079798 G A OR2J3 Missense_Mutation p.G44E 0.15 deleterious(0) probably_damaging(0.984) TCGA-D3-A3MR-06 6 29079834 29079834 C T OR2J3 Missense_Mutation p.S56F 0.16 deleterious(0.03) possibly_damaging(0.776) TCGA-D3-A3MR-06 6 29394788 29394788 G A OR11A1 Missense_Mutation p.P211S 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 6 29430419 29430419 G A OR2H1 Silent p.R291R 0.23 TCGA-D3-A3MR-06 6 29523699 29523699 C T UBD Silent p.K152K 0.15 TCGA-D3-A3MR-06 6 29634018 29634018 C T MOG Missense_Mutation p.L176F 0.17 tolerated(0.21) benign(0.072) TCGA-D3-A3MR-06 6 29640457 29640457 C T ZFP57 Silent p.V477V 0.20 TCGA-D3-A3MR-06 6 30954911 30954911 C T MUC21 Missense_Mutation p.S320F 0.05 deleterious(0.01) unknown(0) TCGA-D3-A3MR-06 6 31431022 31431022 C T HCP5 RNA 0.19 TCGA-D3-A3MR-06 6 32119657 32119657 C T PRRT1 5'UTR 0.31 TCGA-D3-A3MR-06 6 32119658 32119658 C T PRRT1 5'UTR 0.31 TCGA-D3-A3MR-06 6 32780960 32780960 C T HLA-DOB 3'UTR 0.15 TCGA-D3-A3MR-06 6 32948539 32948539 C T BRD2 3'UTR 0.16 TCGA-D3-A3MR-06 6 35705867 35705867 C T ARMC12 Missense_Mutation p.S103F 0.11 tolerated(0.1) probably_damaging(0.997) TCGA-D3-A3MR-06 6 36107150 36107150 G A MAPK13 Silent p.%3D 0.19 TCGA-D3-A3MR-06 6 36287271 36287271 G A C6orf222 Silent p.N595N 0.22 TCGA-D3-A3MR-06 6 38690878 38690878 C T DNAH8 5'Flank 0.18 TCGA-D3-A3MR-06 6 38851670 38851670 G A DNAH8 Missense_Mutation p.V2502M 0.14 possibly_damaging(0.74) TCGA-D3-A3MR-06 6 39040771 39040771 G A GLP1R Missense_Mutation p.D215N 0.14 deleterious(0.04) possibly_damaging(0.627) TCGA-D3-A3MR-06 6 41895271 41895271 C T BYSL Missense_Mutation p.A143V 0.18 tolerated(0.4) benign(0.002) TCGA-D3-A3MR-06 6 42832784 42832784 C T GLTSCR1L Missense_Mutation p.S947L 0.21 tolerated_low_confidence(0.35) benign(0.001) TCGA-D3-A3MR-06 6 43406446 43406446 C T ABCC10 Silent p.I680I 0.19 TCGA-D3-A3MR-06 6 52131448 52131448 G A MCM3 Missense_Mutation p.P752S 0.19 tolerated(0.21) possibly_damaging(0.558) TCGA-D3-A3MR-06 6 54804803 54804803 T A FAM83B Nonsense_Mutation p.L345* 0.12 TCGA-D3-A3MR-06 6 55113580 55113580 G A HCRTR2 Missense_Mutation p.G123R 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 6 55924003 55924003 C T COL21A1 Silent p.G882G 0.13 TCGA-D3-A3MR-06 6 56357836 56357836 G A DST Nonsense_Mutation p.Q4193* 0.15 TCGA-D3-A3MR-06 6 56357837 56357837 G A DST Silent p.L4192L 0.15 TCGA-D3-A3MR-06 6 56496088 56496088 G A DST Missense_Mutation p.P818S 0.17 benign(0.172) TCGA-D3-A3MR-06 6 57011995 57011995 T C ZNF451 Missense_Mutation p.F371S 0.18 deleterious(0) possibly_damaging(0.811) TCGA-D3-A3MR-06 6 7182142 7182142 C T RREB1 5'UTR 0.14 TCGA-D3-A3MR-06 6 84302218 84302218 G A SNAP91 Missense_Mutation p.S629L 0.24 tolerated(0.09) probably_damaging(0.945) TCGA-D3-A3MR-06 7 100074916 100074916 G A TSC22D4 Missense_Mutation p.P249L 0.15 deleterious_low_confidence(0) benign(0.223) TCGA-D3-A3MR-06 7 100244204 100244204 G A ACTL6B Silent p.L361L 0.09 TCGA-D3-A3MR-06 7 100410420 100410420 G A EPHB4 Silent p.V689V 0.20 TCGA-D3-A3MR-06 7 100551377 100551377 G A MUC3A Missense_Mutation p.R43Q 0.16 tolerated_low_confidence(0.2) unknown(0) TCGA-D3-A3MR-06 7 100679405 100679405 G A MUC17 Missense_Mutation p.E1570K 0.17 unknown(0) TCGA-D3-A3MR-06 7 100865994 100865994 C T ZNHIT1 Silent p.P44P 0.11 TCGA-D3-A3MR-06 7 106822999 106822999 C T HBP1 Silent p.I117I 0.09 TCGA-D3-A3MR-06 7 107423747 107423747 C T SLC26A3 Missense_Mutation p.G341E 0.27 tolerated(0.72) probably_damaging(0.939) TCGA-D3-A3MR-06 7 111418398 111418398 C T DOCK4 Missense_Mutation p.E1196K 0.19 tolerated(0.3) possibly_damaging(0.831) TCGA-D3-A3MR-06 7 117304901 117304901 C T CFTR Missense_Mutation p.H1375Y 0.16 tolerated(0.56) benign(0.001) TCGA-D3-A3MR-06 7 121766504 121766504 G A AASS Missense_Mutation p.L133F 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A3MR-06 7 122261757 122261757 G A CADPS2 Silent p.P294P 0.18 TCGA-D3-A3MR-06 7 123346376 123346376 G A WASL Nonsense_Mutation p.R131* 0.18 TCGA-D3-A3MR-06 7 126173042 126173042 G A GRM8 Silent p.I798I 0.19 TCGA-D3-A3MR-06 7 127255586 127255586 C T PAX4 5'UTR 0.15 TCGA-D3-A3MR-06 7 127638071 127638071 C T SND1 Intron 0.18 TCGA-D3-A3MR-06 7 128477557 128477557 C T FLNC Nonsense_Mutation p.R269* 0.19 TCGA-D3-A3MR-06 7 129962492 129962492 G A CPA4 Silent p.E414E 0.16 TCGA-D3-A3MR-06 7 140051896 140051896 G A SLC37A3 Silent p.I223I 0.08 TCGA-D3-A3MR-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.20 deleterious(0) probably_damaging(0.967) TCGA-D3-A3MR-06 7 141724851 141724851 A G MGAM Missense_Mutation p.N295S 0.16 tolerated(0.39) benign(0.001) TCGA-D3-A3MR-06 7 141747642 141747642 A T MGAM Silent p.G852G 0.20 TCGA-D3-A3MR-06 7 141951974 141951974 T A PRSS58 3'UTR 0.22 TCGA-D3-A3MR-06 7 142561798 142561798 C T EPHB6 Silent p.A80A 0.16 TCGA-D3-A3MR-06 7 142566873 142566873 G A EPHB6 Silent p.K810K 0.16 TCGA-D3-A3MR-06 7 142658447 142658447 G A KEL Missense_Mutation p.R75C 0.12 tolerated(0.19) benign(0.003) TCGA-D3-A3MR-06 7 142659388 142659388 C T KEL 5'UTR 0.15 TCGA-D3-A3MR-06 7 143013381 143013381 C T CLCN1 Missense_Mutation p.P26S 0.10 tolerated_low_confidence(0.84) benign(0.004) TCGA-D3-A3MR-06 7 143013382 143013382 C T CLCN1 Missense_Mutation p.P26L 0.10 tolerated_low_confidence(0.16) benign(0.075) TCGA-D3-A3MR-06 7 143096875 143096875 G A EPHA1 Missense_Mutation p.A235V 0.23 deleterious(0) possibly_damaging(0.487) TCGA-D3-A3MR-06 7 143141175 143141175 C T TAS2R60 Silent p.F210F 0.17 TCGA-D3-A3MR-06 7 143632602 143632602 C T OR2F2 Missense_Mutation p.P93S 0.14 tolerated(1) benign(0.002) TCGA-D3-A3MR-06 7 143657345 143657345 C T OR2F1 Silent p.F94F 0.15 TCGA-D3-A3MR-06 7 143929570 143929570 C T OR2A42 Missense_Mutation p.V123M 0.16 deleterious(0.02) possibly_damaging(0.698) TCGA-D3-A3MR-06 7 144096266 144096266 G A NOBOX Missense_Mutation p.P416S 0.24 tolerated(0.21) benign(0.376) TCGA-D3-A3MR-06 7 148767728 148767728 G A ZNF786 Silent p.N712N 0.18 TCGA-D3-A3MR-06 7 150034718 150034718 C T LRRC61 Silent p.S256S 0.27 TCGA-D3-A3MR-06 7 150174694 150174694 G A GIMAP8 Silent p.Q608Q 0.12 TCGA-D3-A3MR-06 7 150217107 150217107 G A GIMAP7 Silent p.G15G 0.14 TCGA-D3-A3MR-06 7 150217394 150217394 C T GIMAP7 Missense_Mutation p.T111I 0.25 deleterious(0) probably_damaging(0.982) TCGA-D3-A3MR-06 7 150217395 150217395 C T GIMAP7 Silent p.T111T 0.25 TCGA-D3-A3MR-06 7 150324919 150324919 C T GIMAP6 Missense_Mutation p.G256D 0.12 tolerated(0.09) benign(0.043) TCGA-D3-A3MR-06 7 150437966 150437966 G A GIMAP5 Splice_Site 0.16 TCGA-D3-A3MR-06 7 154593138 154593138 G A DPP6 Missense_Mutation p.G458E 0.17 deleterious(0) probably_damaging(0.991) TCGA-D3-A3MR-06 7 18066766 18066766 G A PRPS1L1 Missense_Mutation p.R214C 0.15 deleterious(0.03) possibly_damaging(0.776) TCGA-D3-A3MR-06 7 19015505 19015505 G A HDAC9 Silent p.E1033E 0.10 TCGA-D3-A3MR-06 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.18 tolerated(0.64) benign(0.002) TCGA-D3-A3MR-06 7 22194146 22194146 G A RAPGEF5 Silent p.I418I 0.25 TCGA-D3-A3MR-06 7 22202128 22202128 C T RAPGEF5 Missense_Mutation p.E286K 0.09 deleterious(0.01) benign(0.16) TCGA-D3-A3MR-06 7 23768735 23768735 G A STK31 Missense_Mutation p.G117E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 7 39379267 39379267 C T POU6F2 Nonsense_Mutation p.Q180* 0.19 TCGA-D3-A3MR-06 7 4153796 4153796 C T SDK1 Missense_Mutation p.T1238I 0.19 tolerated(0.09) benign(0.355) TCGA-D3-A3MR-06 7 44706363 44706363 C T OGDH Silent p.L182L 0.16 TCGA-D3-A3MR-06 7 48314304 48314304 C T ABCA13 Nonsense_Mutation p.Q1681* 0.15 TCGA-D3-A3MR-06 7 48452118 48452118 G A ABCA13 Missense_Mutation p.D4133N 0.16 probably_damaging(0.929) TCGA-D3-A3MR-06 7 4899900 4899900 T G PAPOLB Missense_Mutation p.R513S 0.12 tolerated(0.66) benign(0) TCGA-D3-A3MR-06 7 55863665 55863665 C T SEPT14 Missense_Mutation p.E414K 0.14 deleterious(0.04) benign(0.031) TCGA-D3-A3MR-06 7 56082721 56082721 G A PSPH Missense_Mutation p.P189S 0.17 deleterious(0.02) possibly_damaging(0.891) TCGA-D3-A3MR-06 7 57187663 57187663 G A ZNF479 Missense_Mutation p.H487Y 0.12 deleterious(0.03) benign(0.009) TCGA-D3-A3MR-06 7 57529366 57529366 G A ZNF716 Missense_Mutation p.R400K 0.15 tolerated(0.4) benign(0.002) TCGA-D3-A3MR-06 7 6089631 6089631 G A EIF2AK1 Missense_Mutation p.T108I 0.19 deleterious(0.01) benign(0.197) TCGA-D3-A3MR-06 7 6426893 6426893 C T RAC1 Missense_Mutation p.P29L 0.14 deleterious(0.02) possibly_damaging(0.839) TCGA-D3-A3MR-06 7 65705894 65705894 C T TPST1 Missense_Mutation p.P161L 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 7 71275406 71275406 C T CALN1 Silent p.T191T 0.17 TCGA-D3-A3MR-06 7 7278223 7278223 C A C1GALT1 Nonsense_Mutation p.Y186* 0.19 TCGA-D3-A3MR-06 7 72892707 72892707 G A BAZ1B Missense_Mutation p.P362S 0.12 tolerated(0.2) benign(0.01) TCGA-D3-A3MR-06 7 72966521 72966521 C T BCL7B Nonsense_Mutation p.W48* 0.16 TCGA-D3-A3MR-06 7 780983 780983 G A HEATR2 Splice_Site p.X302_splice 0.29 TCGA-D3-A3MR-06 7 82387949 82387949 A C PCLO Missense_Mutation p.L5124R 0.16 unknown(0) TCGA-D3-A3MR-06 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.21 unknown(0) TCGA-D3-A3MR-06 7 82582783 82582783 C T PCLO Missense_Mutation p.G2496R 0.15 unknown(0) TCGA-D3-A3MR-06 7 82784523 82784523 C T PCLO Silent p.K478K 0.25 TCGA-D3-A3MR-06 7 87785248 87785248 C T ADAM22 Missense_Mutation p.P612S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 7 90014223 90014223 G A GTPBP10 Missense_Mutation p.E307K 0.14 tolerated(0.1) benign(0.001) TCGA-D3-A3MR-06 7 92861751 92861751 G A CCDC132 5'UTR 0.17 TCGA-D3-A3MR-06 7 93116311 93116311 C T CALCR Missense_Mutation p.D13N 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A3MR-06 7 94044561 94044561 C T COL1A2 Silent p.L581L 0.17 TCGA-D3-A3MR-06 7 94044562 94044562 C T COL1A2 Missense_Mutation p.P582S 0.16 unknown(0) TCGA-D3-A3MR-06 7 94218045 94218045 C T SGCE Splice_Site p.X443_splice 0.17 TCGA-D3-A3MR-06 7 94879518 94879518 G A PPP1R9A Missense_Mutation p.E783K 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MR-06 7 95726821 95726821 G A DYNC1I1 Nonsense_Mutation p.W618* 0.13 TCGA-D3-A3MR-06 7 97823438 97823438 C T LMTK2 Missense_Mutation p.R1221C 0.18 tolerated(0.19) benign(0.004) TCGA-D3-A3MR-06 7 98254283 98254283 C T NPTX2 Silent p.L231L 0.13 TCGA-D3-A3MR-06 7 99264287 99264287 C T CYP3A5 Missense_Mutation p.G153E 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A3MR-06 8 101174522 101174522 A C SPAG1 Missense_Mutation p.D5A 0.21 deleterious(0.05) benign(0.084) TCGA-D3-A3MR-06 8 10467460 10467460 C T RP1L1 Missense_Mutation p.G1383E 0.17 unknown(0) TCGA-D3-A3MR-06 8 10467461 10467461 C T RP1L1 Missense_Mutation p.G1383R 0.16 unknown(0) TCGA-D3-A3MR-06 8 10469266 10469266 G A RP1L1 Missense_Mutation p.S781F 0.21 probably_damaging(0.97) TCGA-D3-A3MR-06 8 10469813 10469813 C G RP1L1 Missense_Mutation p.E599Q 0.12 possibly_damaging(0.467) TCGA-D3-A3MR-06 8 10470537 10470537 G A RP1L1 Silent p.P357P 0.19 TCGA-D3-A3MR-06 8 10480303 10480303 C T RP1L1 Missense_Mutation p.E137K 0.22 probably_damaging(0.992) TCGA-D3-A3MR-06 8 105263863 105263863 C T RIMS2 Missense_Mutation p.H1289Y 0.13 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D3-A3MR-06 8 106815200 106815200 C T ZFPM2 Missense_Mutation p.P964S 0.17 tolerated_low_confidence(0.2) benign(0.11) TCGA-D3-A3MR-06 8 106815353 106815353 C T ZFPM2 Missense_Mutation p.P1015S 0.12 tolerated_low_confidence(0.47) benign(0.047) TCGA-D3-A3MR-06 8 110457192 110457192 C T PKHD1L1 Silent p.F1698F 0.21 TCGA-D3-A3MR-06 8 110510897 110510897 G A PKHD1L1 Silent p.G3575G 0.14 TCGA-D3-A3MR-06 8 121170405 121170405 C T COL14A1 Missense_Mutation p.S42F 0.26 deleterious(0.02) probably_damaging(0.936) TCGA-D3-A3MR-06 8 121502739 121502739 C T MTBP Missense_Mutation p.S459F 0.13 tolerated(0.7) benign(0.265) TCGA-D3-A3MR-06 8 133153556 133153556 G A KCNQ3 Missense_Mutation p.R429W 0.19 deleterious(0) possibly_damaging(0.891) TCGA-D3-A3MR-06 8 13357043 13357043 C T DLC1 Missense_Mutation p.E180K 0.13 tolerated_low_confidence(0.17) benign(0.002) TCGA-D3-A3MR-06 8 141525279 141525280 AA - CHRAC1 Frame_Shift_Del p.K111Efs*5 0.17 TCGA-D3-A3MR-06 8 142488820 142488820 G A MROH5 3'UTR 0.31 TCGA-D3-A3MR-06 8 144941471 144941471 C T EPPK1 Missense_Mutation p.G1984E 0.12 benign(0.142) TCGA-D3-A3MR-06 8 144942557 144942557 T C EPPK1 Missense_Mutation p.K1622R 0.32 benign(0.04) TCGA-D3-A3MR-06 8 144945154 144945154 G A EPPK1 Silent p.I756I 0.14 TCGA-D3-A3MR-06 8 2063806 2063806 C T MYOM2 Nonsense_Mutation p.R1079* 0.17 TCGA-D3-A3MR-06 8 21955042 21955042 C T FAM160B2 Missense_Mutation p.R105W 0.12 deleterious(0) probably_damaging(0.992) TCGA-D3-A3MR-06 8 23709814 23709814 C T STC1 Missense_Mutation p.D68N 0.22 tolerated(0.3) benign(0.072) TCGA-D3-A3MR-06 8 24300070 24300070 C G ADAM7 Missense_Mutation p.T46S 0.17 tolerated(0.82) benign(0.026) TCGA-D3-A3MR-06 8 24339764 24339764 C T ADAM7 Missense_Mutation p.S272L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A3MR-06 8 24359078 24359078 C T ADAM7 Missense_Mutation p.H733Y 0.26 deleterious(0.04) benign(0.03) TCGA-D3-A3MR-06 8 26505250 26505250 C T DPYSL2 Silent p.S405S 0.16 TCGA-D3-A3MR-06 8 26721774 26721774 C T ADRA1A Missense_Mutation p.R238Q 0.06 tolerated(0.22) possibly_damaging(0.819) TCGA-D3-A3MR-06 8 27098701 27098701 G A STMN4 Missense_Mutation p.S90F 0.20 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MR-06 8 27168487 27168487 C T TRIM35 Missense_Mutation p.G89D 0.24 deleterious(0.04) benign(0.002) TCGA-D3-A3MR-06 8 28206666 28206666 G A ZNF395 Missense_Mutation p.P469L 0.16 deleterious(0) probably_damaging(0.929) TCGA-D3-A3MR-06 8 28638383 28638383 C T INTS9 Missense_Mutation p.M409I 0.25 tolerated(0.48) benign(0.162) TCGA-D3-A3MR-06 8 37794358 37794358 G A GOT1L1 Missense_Mutation p.P215S 0.13 tolerated(0.28) possibly_damaging(0.467) TCGA-D3-A3MR-06 8 38117619 38117619 C T DDHD2 Missense_Mutation p.L706F 0.16 tolerated(0.34) benign(0.026) TCGA-D3-A3MR-06 8 39871143 39871143 C T IDO2 Missense_Mutation p.P273L 0.16 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MR-06 8 39871144 39871144 C T IDO2 Silent p.P273P 0.16 TCGA-D3-A3MR-06 8 40011065 40011065 G A C8orf4 Missense_Mutation p.R5Q 0.26 tolerated_low_confidence(0.12) benign(0.001) TCGA-D3-A3MR-06 8 41566302 41566302 C T ANK1 Silent p.G697G 0.13 TCGA-D3-A3MR-06 8 48883249 48883249 C T MCM4 Missense_Mutation p.S538F 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 8 51569480 51569480 G A SNTG1 Missense_Mutation p.M287I 0.22 deleterious(0) benign(0.291) TCGA-D3-A3MR-06 8 51705264 51705264 C T SNTG1 Missense_Mutation p.H477Y 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-D3-A3MR-06 8 53126799 53126799 C T ST18 Missense_Mutation p.D7N 0.23 tolerated(0.17) benign(0.006) TCGA-D3-A3MR-06 8 55534024 55534024 G A RP1 Silent p.T166T 0.14 TCGA-D3-A3MR-06 8 55538171 55538171 G A RP1 Missense_Mutation p.E577K 0.17 deleterious(0.03) possibly_damaging(0.606) TCGA-D3-A3MR-06 8 55539790 55539790 C T RP1 Silent p.P1116P 0.17 TCGA-D3-A3MR-06 8 56879416 56879416 G A LYN Silent p.R311R 0.13 TCGA-D3-A3MR-06 8 62577791 62577791 G A ASPH Intron 0.14 TCGA-D3-A3MR-06 8 6302531 6302531 C T MCPH1 Missense_Mutation p.P430S 0.07 tolerated(0.38) probably_damaging(0.991) TCGA-D3-A3MR-06 8 67040682 67040682 C T TRIM55 Silent p.I104I 0.20 TCGA-D3-A3MR-06 8 67786786 67786786 C T MCMDC2 Missense_Mutation p.L84F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3MR-06 8 67803270 67803270 C A MCMDC2 Nonsense_Mutation p.S415* 0.13 TCGA-D3-A3MR-06 8 69621256 69621256 G A C8orf34 Silent p.R423R 0.08 TCGA-D3-A3MR-06 8 70533446 70533446 A G SULF1 Silent p.R518R 0.09 TCGA-D3-A3MR-06 8 75262653 75262653 C T GDAP1 5'UTR 0.11 TCGA-D3-A3MR-06 8 76456161 76456161 G T HNF4G Silent p.G68G 0.07 TCGA-D3-A3MR-06 8 77767897 77767897 G A ZFHX4 Missense_Mutation p.G2914R 0.22 probably_damaging(0.999) TCGA-D3-A3MR-06 8 77775665 77775665 G A ZFHX4 Missense_Mutation p.D3239N 0.17 probably_damaging(0.992) TCGA-D3-A3MR-06 8 77776784 77776784 G A ZFHX4 Missense_Mutation p.D3612N 0.12 probably_damaging(0.991) TCGA-D3-A3MR-06 8 8185818 8185818 G A SGK223 Missense_Mutation p.S825L 0.18 probably_damaging(0.977) TCGA-D3-A3MR-06 8 8235348 8235348 C T SGK223 Missense_Mutation p.E191K 0.16 benign(0.037) TCGA-D3-A3MR-06 8 98155471 98155471 G A CPQ 3'UTR 0.22 TCGA-D3-A3MR-06 9 107299020 107299020 G A OR13C3 Silent p.F25F 0.16 TCGA-D3-A3MR-06 9 107589322 107589322 G A ABCA1 Silent p.A748A 0.21 TCGA-D3-A3MR-06 9 117108984 117108984 G A AKNA Missense_Mutation p.S1160F 0.23 deleterious(0.03) benign(0.132) TCGA-D3-A3MR-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.25 TCGA-D3-A3MR-06 9 121976231 121976231 A G BRINP1 Silent p.S296S 0.28 TCGA-D3-A3MR-06 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.23 tolerated(0.12) benign(0.004) TCGA-D3-A3MR-06 9 125330723 125330723 C T OR1L8 Missense_Mutation p.E12K 0.25 deleterious(0.02) possibly_damaging(0.848) TCGA-D3-A3MR-06 9 125424369 125424369 C T OR1L1 Silent p.A125A 0.25 TCGA-D3-A3MR-06 9 133355132 133355132 G A ASS1 Missense_Mutation p.D240N 0.19 tolerated(0.25) benign(0.003) TCGA-D3-A3MR-06 9 133760199 133760199 C T ABL1 Missense_Mutation p.A860V 0.17 deleterious_low_confidence(0.05) benign(0.006) TCGA-D3-A3MR-06 9 133760200 133760200 C T ABL1 Silent p.A860A 0.17 TCGA-D3-A3MR-06 9 134405904 134405904 G A UCK1 Silent p.A84A 0.22 TCGA-D3-A3MR-06 9 134501591 134501591 G A RAPGEF1 Missense_Mutation p.P475S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 9 134501592 134501592 G A RAPGEF1 Silent p.L474L 0.16 TCGA-D3-A3MR-06 9 136083586 136083586 C T OBP2B Missense_Mutation p.E71K 0.14 tolerated(1) benign(0.006) TCGA-D3-A3MR-06 9 136337266 136337266 G A SLC2A6 Silent p.F467F 0.14 TCGA-D3-A3MR-06 9 137717748 137717748 G A COL5A1 Missense_Mutation p.G1689R 0.15 unknown(0) TCGA-D3-A3MR-06 9 138011438 138011438 C T OLFM1 Missense_Mutation p.S273F 0.25 deleterious(0.04) probably_damaging(0.951) TCGA-D3-A3MR-06 9 139362887 139362887 G A SEC16A Missense_Mutation p.S1261F 0.19 tolerated(0.06) probably_damaging(0.946) TCGA-D3-A3MR-06 9 139568309 139568309 G A AGPAT2 Silent p.L244L 0.32 TCGA-D3-A3MR-06 9 140059530 140059530 G A GRIN1 Intron 0.27 TCGA-D3-A3MR-06 9 140332642 140332642 G A ENTPD8 Silent p.A32A 0.19 TCGA-D3-A3MR-06 9 27172647 27172647 A G TEK Missense_Mutation p.N221S 0.19 tolerated(0.89) benign(0) TCGA-D3-A3MR-06 9 27192514 27192514 A T TEK Missense_Mutation p.Y506F 0.21 tolerated(0.09) benign(0.003) TCGA-D3-A3MR-06 9 27949658 27949658 C T LINGO2 Missense_Mutation p.E338K 0.23 tolerated(0.12) benign(0.017) TCGA-D3-A3MR-06 9 33470070 33470070 G A NOL6 Silent p.Y166Y 0.14 TCGA-D3-A3MR-06 9 35819948 35819948 C T FAM221B Silent p.R264R 0.18 TCGA-D3-A3MR-06 9 36170243 36170243 C T CCIN Silent p.S248S 0.21 TCGA-D3-A3MR-06 9 37740180 37740180 C T FRMPD1 Missense_Mutation p.S552L 0.17 deleterious(0.04) benign(0.011) TCGA-D3-A3MR-06 9 39149883 39149883 C T CNTNAP3 Silent p.A523A 0.16 TCGA-D3-A3MR-06 9 5920144 5920144 A C KIAA2026 Nonsense_Mutation p.L1951* 0.30 TCGA-D3-A3MR-06 9 7049150 7049150 G A KDM4C Missense_Mutation p.E792K 0.25 tolerated(0.12) benign(0.21) TCGA-D3-A3MR-06 9 71094430 71094430 G A PGM5 Missense_Mutation p.R419Q 0.26 tolerated(0.28) benign(0.025) TCGA-D3-A3MR-06 9 72064629 72064629 G A APBA1 Silent p.I684I 0.15 TCGA-D3-A3MR-06 9 72833334 72833334 C T MAMDC2 Missense_Mutation p.S578F 0.20 tolerated(0.2) benign(0.328) TCGA-D3-A3MR-06 9 75784010 75784010 G A ANXA1 Missense_Mutation p.M308I 0.27 tolerated(0.05) benign(0.265) TCGA-D3-A3MR-06 9 79441589 79441589 C T PRUNE2 Missense_Mutation p.E190K 0.17 tolerated(0.5) benign(0.252) TCGA-D3-A3MR-06 9 8484375 8484375 G A PTPRD Missense_Mutation p.L1053F 0.16 tolerated(0.23) probably_damaging(0.978) TCGA-D3-A3MR-06 9 85928607 85928607 C T FRMD3 Missense_Mutation p.E218K 0.20 deleterious(0) probably_damaging(0.974) TCGA-D3-A3MR-06 9 90500779 90500779 G A SPATA31E1 Silent p.R459R 0.17 TCGA-D3-A3MR-06 9 90502572 90502572 C T SPATA31E1 Missense_Mutation p.S1057L 0.20 tolerated(0.07) possibly_damaging(0.81) TCGA-D3-A3MR-06 9 93636491 93636491 C T SYK Silent p.S307S 0.15 TCGA-D3-A3MR-06 9 97329558 97329558 G A FBP2 Silent p.F233F 0.19 TCGA-D3-A3MR-06 9 97365738 97365738 C T FBP1 Silent p.R314R 0.21 TCGA-D3-A3MR-06 9 98209334 98209334 G A PTCH1 Missense_Mutation p.P1402S 0.17 tolerated_low_confidence(0.59) benign(0.004) TCGA-D3-A3MR-06 9 99799644 99799644 G A CTSV Nonsense_Mutation p.R96* 0.17 TCGA-D3-A3MR-06 X 100625025 100625025 C T BTK Missense_Mutation p.E118K 0.44 tolerated(0.17) probably_damaging(0.925) TCGA-D3-A3MR-06 X 101395719 101395719 C T TCEAL6 3'UTR 0.48 TCGA-D3-A3MR-06 X 103219165 103219165 G A TMSB15B Missense_Mutation p.E24K 0.44 tolerated(0.09) benign(0.001) TCGA-D3-A3MR-06 X 103267863 103267863 G A H2BFWT Silent p.L124L 0.21 TCGA-D3-A3MR-06 X 105153173 105153173 G A NRK Missense_Mutation p.D515N 0.37 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MR-06 X 115304404 115304404 G A AGTR2 Missense_Mutation p.E291K 0.33 tolerated(0.93) benign(0.013) TCGA-D3-A3MR-06 X 123526147 123526147 C T TENM1 Missense_Mutation p.G1815R 0.29 deleterious(0.03) benign(0.029) TCGA-D3-A3MR-06 X 129147349 129147349 G T BCORL1 Missense_Mutation p.A201S 0.41 unknown(0) TCGA-D3-A3MR-06 X 129771314 129771314 C T ENOX2 Silent p.R429R 0.31 TCGA-D3-A3MR-06 X 132352018 132352018 G A TFDP3 Silent p.S90S 0.35 TCGA-D3-A3MR-06 X 135429121 135429121 C T GPR112 Missense_Mutation p.R1086C 0.38 deleterious(0.03) benign(0.004) TCGA-D3-A3MR-06 X 140993791 140993791 C T MAGEC1 Missense_Mutation p.P201S 0.12 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-D3-A3MR-06 X 148798384 148798384 C T MAGEA11 Missense_Mutation p.S413F 0.37 tolerated(0.08) benign(0.248) TCGA-D3-A3MR-06 X 149013407 149013407 C T MAGEA8 Missense_Mutation p.R121C 0.28 deleterious(0.01) possibly_damaging(0.67) TCGA-D3-A3MR-06 X 150911042 150911042 C T CNGA2 Silent p.L173L 0.38 TCGA-D3-A3MR-06 X 151123951 151123951 G A GABRE Silent p.F342F 0.42 TCGA-D3-A3MR-06 X 152612854 152612854 C T ZNF275 Silent p.F237F 0.37 TCGA-D3-A3MR-06 X 152937353 152937353 G A PNCK Silent p.I215I 0.39 TCGA-D3-A3MR-06 X 154157222 154157222 C T F8 Missense_Mutation p.D1615N 0.26 deleterious(0.03) probably_damaging(0.962) TCGA-D3-A3MR-06 X 16170557 16170557 C T GRPR Missense_Mutation p.S315F 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A3MR-06 X 18260571 18260571 G A SCML2 Silent p.L654L 0.32 TCGA-D3-A3MR-06 X 23411555 23411555 C T PTCHD1 Silent p.V640V 0.33 TCGA-D3-A3MR-06 X 30260714 30260714 C T MAGEB4 Silent p.V154V 0.29 TCGA-D3-A3MR-06 X 3241328 3241328 C T MXRA5 Missense_Mutation p.E800K 0.32 tolerated(0.44) benign(0.388) TCGA-D3-A3MR-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.34 TCGA-D3-A3MR-06 X 36156082 36156082 C T CHDC2 Silent p.I351I 0.41 TCGA-D3-A3MR-06 X 53114855 53114855 C T TSPYL2 Silent p.A427A 0.28 TCGA-D3-A3MR-06 X 57358037 57358037 C T FAAH2 Missense_Mutation p.P140L 0.29 tolerated(0.08) benign(0.014) TCGA-D3-A3MR-06 X 70521759 70521759 G A ITGB1BP2 Intron 0.24 TCGA-D3-A3MR-06 X 70597602 70597602 C T TAF1 Silent p.S308S 0.34 TCGA-D3-A3MR-06 X 7175566 7175566 C T STS Missense_Mutation p.P112S 0.29 deleterious(0.02) probably_damaging(0.955) TCGA-D3-A3MR-06 X 71787622 71787622 A G HDAC8 Intron 0.40 TCGA-D3-A3MR-06 X 73066240 73066240 G A XIST RNA 0.36 TCGA-D3-A3MR-06 X 77912865 77912865 G A ZCCHC5 Silent p.N351N 0.33 TCGA-D3-A3MR-06 X 77913710 77913710 G A ZCCHC5 Missense_Mutation p.P70S 0.36 tolerated_low_confidence(0.79) benign(0.005) TCGA-D3-A3MR-06 X 79281235 79281235 C T TBX22 Missense_Mutation p.R198C 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A3MR-06 Y 22942837 22942837 C T RPS4Y2 Silent p.S237S 0.33 TCGA-D3-A3MU-06 10 103989048 103989048 C T ELOVL3 3'UTR 0.29 TCGA-D3-A3MU-06 10 116418029 116418029 C T ABLIM1 5'UTR 0.40 TCGA-D3-A3MU-06 10 121586482 121586482 C T INPP5F Silent p.F863F 0.36 TCGA-D3-A3MU-06 10 123970033 123970033 C T TACC2 Silent p.A2031A 0.22 TCGA-D3-A3MU-06 10 123987437 123987437 G T TACC2 Nonsense_Mutation p.E2604* 0.06 TCGA-D3-A3MU-06 10 129899812 129899812 C T MKI67 Missense_Mutation p.G3139R 0.33 deleterious(0) possibly_damaging(0.535) TCGA-D3-A3MU-06 10 21115411 21115411 C T NEBL Missense_Mutation p.E612K 0.25 tolerated(0.16) benign(0.221) TCGA-D3-A3MU-06 10 25887166 25887166 G A GPR158 Missense_Mutation p.E871K 0.34 deleterious(0.01) possibly_damaging(0.778) TCGA-D3-A3MU-06 10 26785232 26785232 G A APBB1IP Splice_Site p.X25_splice 0.27 TCGA-D3-A3MU-06 10 27401036 27401036 C A YME1L1 Missense_Mutation p.R731L 0.29 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MU-06 10 33018276 33018276 C T C10ORF68 Silent p.I239I 0.27 TCGA-D3-A3MU-06 10 50599297 50599297 G T DRGX Silent p.T20T 0.46 TCGA-D3-A3MU-06 10 50835827 50835827 G A CHAT Silent p.V369V 0.27 TCGA-D3-A3MU-06 10 50943359 50943359 C T OGDHL Missense_Mutation p.G983E 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 10 51464851 51464851 G A AGAP7 Silent p.S535S 0.32 TCGA-D3-A3MU-06 10 51464852 51464852 G A AGAP7 Missense_Mutation p.S535F 0.31 deleterious(0) probably_damaging(0.973) TCGA-D3-A3MU-06 10 5436157 5436157 G A TUBAL3 Missense_Mutation p.R222C 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.479) TCGA-D3-A3MU-06 10 61829989 61829989 C T ANK3 Silent p.G3550G 0.26 TCGA-D3-A3MU-06 10 61835412 61835412 C T ANK3 Missense_Mutation p.E1743K 0.36 benign(0.011) TCGA-D3-A3MU-06 10 70513779 70513779 A G CCAR1 Missense_Mutation p.E430G 0.41 tolerated(0.38) benign(0.145) TCGA-D3-A3MU-06 10 95721211 95721211 G A PIPSL RNA 0.38 TCGA-D3-A3MU-06 10 95791100 95791100 G A PLCE1 Silent p.A99A 0.32 TCGA-D3-A3MU-06 10 96480210 96480210 G A CYP2C18 Missense_Mutation p.D293N 0.38 tolerated(0.19) benign(0.276) TCGA-D3-A3MU-06 11 102573832 102573832 G A MMP27 Missense_Mutation p.P120L 0.37 tolerated(0.09) probably_damaging(1) TCGA-D3-A3MU-06 11 102573833 102573833 G A MMP27 Missense_Mutation p.P120S 0.37 deleterious(0.04) probably_damaging(1) TCGA-D3-A3MU-06 11 106617294 106617294 C T GUCY1A2 Missense_Mutation p.D638N 0.62 tolerated_low_confidence(0.44) benign(0) TCGA-D3-A3MU-06 11 1093927 1093927 C T MUC2 Missense_Mutation p.P1916S 0.43 unknown(0) TCGA-D3-A3MU-06 11 118851424 118851424 G T FOXR1 Missense_Mutation p.C279F 0.65 deleterious(0) probably_damaging(0.959) TCGA-D3-A3MU-06 11 124742331 124742331 C T ROBO3 Missense_Mutation p.P405S 0.71 tolerated(0.27) possibly_damaging(0.906) TCGA-D3-A3MU-06 11 125280117 125280117 C T PKNOX2 Missense_Mutation p.S205F 0.65 deleterious(0) benign(0.027) TCGA-D3-A3MU-06 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.32 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-D3-A3MU-06 11 22301321 22301321 T G ANO5 3'UTR 0.49 TCGA-D3-A3MU-06 11 319838 319838 C T IFITM3 Silent p.%3D 0.29 TCGA-D3-A3MU-06 11 3429917 3429917 T G TSSC2 Intron 0.40 TCGA-D3-A3MU-06 11 49207281 49207281 C T FOLH1 Missense_Mutation p.G256R 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 11 55038083 55038083 G A TRIM48 3'UTR 0.35 TCGA-D3-A3MU-06 11 55371055 55371055 C T OR4C11 Missense_Mutation p.M265I 0.33 tolerated(0.95) benign(0.002) TCGA-D3-A3MU-06 11 55594778 55594778 C T OR5L2 Silent p.F28F 0.33 TCGA-D3-A3MU-06 11 557047 557047 C T C11orf35 Missense_Mutation p.G255E 0.61 tolerated(1) benign(0.01) TCGA-D3-A3MU-06 11 55735237 55735237 G A OR10AG1 Missense_Mutation p.H235Y 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 11 55798741 55798741 C T OR5AS1 Missense_Mutation p.P283S 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MU-06 11 56309927 56309927 T A OR5M11 Missense_Mutation p.E269D 0.42 deleterious(0.03) benign(0.297) TCGA-D3-A3MU-06 11 57319762 57319762 G A UBE2L6 3'UTR 0.41 TCGA-D3-A3MU-06 11 57505492 57505492 T G TMX2 Missense_Mutation p.C120G 0.37 deleterious(0) probably_damaging(0.976) TCGA-D3-A3MU-06 11 5799392 5799392 A T OR52N5 Missense_Mutation p.F158Y 0.34 deleterious(0.04) probably_damaging(0.974) TCGA-D3-A3MU-06 11 59837684 59837684 C T MS4A3 Missense_Mutation p.S208F 0.43 tolerated(0.05) benign(0.09) TCGA-D3-A3MU-06 11 64360949 64360949 C T SLC22A12 Silent p.A193A 0.36 TCGA-D3-A3MU-06 11 65413713 65413713 G A SIPA1 Missense_Mutation p.G429S 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MU-06 11 65628823 65628823 G A CFL1 5'Flank 0.36 TCGA-D3-A3MU-06 11 65629508 65629508 G A MUS81 Missense_Mutation p.E148K 0.50 deleterious(0.02) benign(0.061) TCGA-D3-A3MU-06 11 6867716 6867716 C T OR10A5 Missense_Mutation p.S268F 0.36 deleterious(0.02) benign(0.424) TCGA-D3-A3MU-06 11 69514046 69514046 G A FGF19 Missense_Mutation p.P212L 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 11 720118 720118 C T EPS8L2 Silent p.A74A 0.30 TCGA-D3-A3MU-06 11 73809297 73809297 A C C2CD3 Missense_Mutation p.D912E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 11 89392832 89392832 G A FOLH1B RNA 0.16 TCGA-D3-A3MU-06 11 89531434 89531434 C T TRIM49 Missense_Mutation p.R408Q 0.32 tolerated(0.31) benign(0.126) TCGA-D3-A3MU-06 11 92086227 92086227 G A FAT3 Missense_Mutation p.E317K 0.36 benign(0.071) TCGA-D3-A3MU-06 11 92088438 92088438 G A FAT3 Missense_Mutation p.E1054K 0.34 probably_damaging(0.999) TCGA-D3-A3MU-06 11 94918597 94918597 G A SESN3 Silent p.V195V 0.66 TCGA-D3-A3MU-06 12 108035866 108035866 G A BTBD11 Splice_Site p.X947_splice 0.25 TCGA-D3-A3MU-06 12 109017245 109017245 C T SELPLG Missense_Mutation p.R296K 0.35 tolerated(0.66) benign(0.061) TCGA-D3-A3MU-06 12 11091546 11091546 A C TAS2R14 Missense_Mutation p.N87K 0.30 tolerated(0.12) benign(0.425) TCGA-D3-A3MU-06 12 113645372 113645372 A T IQCD Silent p.T200T 0.32 TCGA-D3-A3MU-06 12 113909269 113909269 A G LHX5 Missense_Mutation p.I12T 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 12 114832644 114832644 C T TBX5 Missense_Mutation p.D189N 0.32 deleterious(0.04) benign(0.182) TCGA-D3-A3MU-06 12 114832645 114832645 C T TBX5 Silent p.A188A 0.32 TCGA-D3-A3MU-06 12 117660637 117660637 G A NOS1 Silent p.F1320F 0.34 TCGA-D3-A3MU-06 12 119954500 119954500 G A CCDC60 Missense_Mutation p.R319K 0.35 tolerated(1) benign(0.004) TCGA-D3-A3MU-06 12 119968833 119968833 G A CCDC60 Missense_Mutation p.E506K 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 12 121431498 121431498 G A HNF1A Silent p.E234E 0.33 TCGA-D3-A3MU-06 12 123471920 123471920 G A PITPNM2 Silent p.F1107F 0.42 TCGA-D3-A3MU-06 12 126139337 126139337 G A TMEM132B 3'UTR 0.43 TCGA-D3-A3MU-06 12 14019064 14019064 G A GRIN2B Missense_Mutation p.R27C 0.47 tolerated(0.07) benign(0.025) TCGA-D3-A3MU-06 12 15699595 15699595 G A PTPRO Missense_Mutation p.E753K 0.37 tolerated(0.08) benign(0.005) TCGA-D3-A3MU-06 12 1983817 1983817 C T CACNA2D4 Missense_Mutation p.E611K 0.30 tolerated(0.45) benign(0.009) TCGA-D3-A3MU-06 12 31116804 31116804 T C TSPAN11 Missense_Mutation p.V43A 0.08 tolerated(0.5) benign(0.053) TCGA-D3-A3MU-06 12 51882614 51882614 C T SLC4A8 Silent p.V806V 0.33 TCGA-D3-A3MU-06 12 53459651 53459651 T C SPRYD3 Missense_Mutation p.K432E 0.14 deleterious(0) possibly_damaging(0.907) TCGA-D3-A3MU-06 12 55039462 55039462 C T DCD Missense_Mutation p.E43K 0.30 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-D3-A3MU-06 12 55356341 55356341 G A TESPA1 Silent p.L447L 0.38 TCGA-D3-A3MU-06 12 55524423 55524423 C T OR9K2 Missense_Mutation p.P291S 0.35 tolerated(0.34) benign(0.196) TCGA-D3-A3MU-06 12 55615533 55615533 C T OR10A7 Missense_Mutation p.S242F 0.26 deleterious(0.02) possibly_damaging(0.699) TCGA-D3-A3MU-06 12 56075953 56075953 G A METTL7B Missense_Mutation p.D139N 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 12 56359780 56359780 T A PMEL Nonsense_Mutation p.K6* 0.38 TCGA-D3-A3MU-06 12 57424006 57424006 G A MYO1A Missense_Mutation p.S860L 0.34 tolerated(0.98) benign(0.006) TCGA-D3-A3MU-06 12 57441839 57441839 G A MYO1A Missense_Mutation p.P55L 0.29 deleterious(0) probably_damaging(0.925) TCGA-D3-A3MU-06 12 7475843 7475843 C T ACSM4 Missense_Mutation p.A380V 0.34 deleterious(0.03) probably_damaging(0.93) TCGA-D3-A3MU-06 12 75442084 75442084 G A KCNC2 Silent p.D543D 0.47 TCGA-D3-A3MU-06 12 80665472 80665472 C T OTOGL Missense_Mutation p.P846S 0.38 tolerated(0.1) possibly_damaging(0.679) TCGA-D3-A3MU-06 12 86373538 86373538 C T MGAT4C Silent p.E322E 0.47 TCGA-D3-A3MU-06 12 93792950 93792950 T C NUDT4 Intron 0.41 TCGA-D3-A3MU-06 13 100511292 100511292 G A CLYBL Missense_Mutation p.E143K 0.35 deleterious(0.01) possibly_damaging(0.597) TCGA-D3-A3MU-06 13 109459056 109459056 G A MYO16 Silent p.K235K 0.28 TCGA-D3-A3MU-06 13 113917914 113917914 C T CUL4A 3'Flank 0.34 TCGA-D3-A3MU-06 13 20024244 20024244 G A TPTE2 Silent p.I315I 0.19 TCGA-D3-A3MU-06 13 30075288 30075288 G A MTUS2 Missense_Mutation p.E1295K 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 13 32339209 32339209 G C RXFP2 Missense_Mutation p.E119Q 0.05 tolerated(0.41) benign(0.004) TCGA-D3-A3MU-06 13 33703751 33703751 C T STARD13 Missense_Mutation p.E355K 0.29 tolerated(0.49) benign(0.009) TCGA-D3-A3MU-06 13 38237850 38237850 G A TRPC4 Missense_Mutation p.P464L 0.36 deleterious(0.02) benign(0.005) TCGA-D3-A3MU-06 13 39266022 39266022 G A FREM2 Missense_Mutation p.G1514E 0.40 deleterious(0.04) probably_damaging(0.984) TCGA-D3-A3MU-06 13 52439773 52439793 TGGGAAGAGGAGAGACCTTTC - CCDC70 In_Frame_Del p.R91_E97del 0.34 TCGA-D3-A3MU-06 13 53418657 53418657 G A PCDH8 3'UTR 0.56 TCGA-D3-A3MU-06 13 99030132 99030132 T G FARP1 Missense_Mutation p.N152K 0.25 deleterious(0.02) benign(0.349) TCGA-D3-A3MU-06 14 106174162 106174162 G A IGHA1 Silent p.P209P 0.37 TCGA-D3-A3MU-06 14 106236226 106236226 C T IGHG3 Silent p.V193V 0.34 TCGA-D3-A3MU-06 14 19378035 19378035 C T OR11H12 Missense_Mutation p.P148S 0.24 tolerated(0.05) benign(0.142) TCGA-D3-A3MU-06 14 20215708 20215708 G A OR4Q3 Missense_Mutation p.G41E 0.34 deleterious(0) possibly_damaging(0.66) TCGA-D3-A3MU-06 14 22447069 22447069 G A TRAV8-6 Missense_Mutation p.G17E 0.41 tolerated(0.19) benign(0.132) TCGA-D3-A3MU-06 14 23444071 23444071 C A AJUBA Missense_Mutation p.G467C 0.39 tolerated(0.16) probably_damaging(0.995) TCGA-D3-A3MU-06 14 23901700 23901700 G A MYH7 Missense_Mutation p.S173F 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MU-06 14 24761407 24761407 C T DHRS1 Missense_Mutation p.D213N 0.37 tolerated(0.14) benign(0.097) TCGA-D3-A3MU-06 14 45645572 45645572 T A FANCM Missense_Mutation p.D1205E 0.53 tolerated(0.55) benign(0.077) TCGA-D3-A3MU-06 14 52937374 52937374 C T TXNDC16 Missense_Mutation p.R446K 0.34 tolerated(0.22) benign(0.247) TCGA-D3-A3MU-06 14 60074182 60074182 G A RTN1 Silent p.I598I 0.35 TCGA-D3-A3MU-06 14 65236380 65236380 C T SPTB Silent p.R1955R 0.31 TCGA-D3-A3MU-06 14 70418950 70418950 C T SMOC1 Silent p.S65S 0.38 TCGA-D3-A3MU-06 14 71267726 71267726 G A MAP3K9 Missense_Mutation p.R160C 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MU-06 14 79454385 79454385 G A NRXN3 Missense_Mutation p.E682K 0.38 tolerated(0.05) benign(0) TCGA-D3-A3MU-06 14 86088638 86088638 G A FLRT2 Silent p.Q260Q 0.36 TCGA-D3-A3MU-06 14 88904239 88904239 G A SPATA7 Missense_Mutation p.E425K 0.36 tolerated(0.11) benign(0.027) TCGA-D3-A3MU-06 14 89154722 89154722 A C EML5 Missense_Mutation p.F879V 0.37 tolerated(0.11) possibly_damaging(0.73) TCGA-D3-A3MU-06 14 93180791 93180791 G A LGMN Missense_Mutation p.P137L 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MU-06 14 93762393 93762393 C T BTBD7 Missense_Mutation p.G2D 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A3MU-06 14 96180332 96180332 G A TCL1A Silent p.F24F 0.30 TCGA-D3-A3MU-06 15 100331808 100331808 C T AC090825.1 5'Flank 0.65 TCGA-D3-A3MU-06 15 101031087 101031087 G A CERS3 Nonsense_Mutation p.R75* 0.22 TCGA-D3-A3MU-06 15 20588503 20588503 G A HERC2P3 RNA 0.53 TCGA-D3-A3MU-06 15 34549973 34549973 G A SLC12A6 Missense_Mutation p.T187I 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 15 42058294 42058294 C T MGA Missense_Mutation p.P2672S 0.43 tolerated_low_confidence(1) benign(0.003) TCGA-D3-A3MU-06 15 43508577 43508577 G T EPB42 Silent p.R59R 0.36 TCGA-D3-A3MU-06 15 43748290 43748290 G A TP53BP1 Missense_Mutation p.S839F 0.43 deleterious_low_confidence(0) benign(0.123) TCGA-D3-A3MU-06 15 43988471 43988471 G A CKMT1A Silent p.V262V 0.22 TCGA-D3-A3MU-06 15 51689707 51689707 C T GLDN Silent p.P243P 0.43 TCGA-D3-A3MU-06 15 54307357 54307357 C T UNC13C Nonsense_Mutation p.Q753* 0.43 TCGA-D3-A3MU-06 15 65370228 65370228 G C KBTBD13 Missense_Mutation p.G359R 0.27 tolerated(0.09) probably_damaging(1) TCGA-D3-A3MU-06 15 65411104 65411104 G A PDCD7 Missense_Mutation p.P470L 0.31 deleterious(0) probably_damaging(0.948) TCGA-D3-A3MU-06 15 68118328 68118328 T C SKOR1 Silent p.S240S 0.38 TCGA-D3-A3MU-06 15 75015312 75015312 G A CYP1A1 Missense_Mutation p.P43S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 15 78921471 78921471 G A CHRNB4 Silent p.P392P 0.43 TCGA-D3-A3MU-06 15 78921472 78921472 G A CHRNB4 Missense_Mutation p.P392L 0.41 tolerated(0.26) benign(0.11) TCGA-D3-A3MU-06 15 79750651 79750651 C T KIAA1024 Missense_Mutation p.S721F 0.31 deleterious(0) probably_damaging(0.987) TCGA-D3-A3MU-06 15 83222287 83222287 G A CPEB1 Silent p.F331F 0.70 TCGA-D3-A3MU-06 15 99500479 99500479 C T IGF1R Silent p.P1304P 0.16 TCGA-D3-A3MU-06 16 1996725 1996725 G A RPL3L Silent p.I284I 0.30 TCGA-D3-A3MU-06 16 24373012 24373012 C T CACNG3 Missense_Mutation p.S259F 0.32 tolerated(0.17) possibly_damaging(0.62) TCGA-D3-A3MU-06 16 31004528 31004528 C T STX1B Missense_Mutation p.E237K 0.37 tolerated(0.47) benign(0.25) TCGA-D3-A3MU-06 16 3777767 3777767 G A CREBBP Silent p.V2427V 0.38 TCGA-D3-A3MU-06 16 4247874 4247874 G A SRL Missense_Mutation p.P101L 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 16 48149423 48149423 G A ABCC12 Missense_Mutation p.S631L 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 16 4852630 4852630 T C ROGDI 5'UTR 0.44 TCGA-D3-A3MU-06 16 4943309 4943309 C T PPL Missense_Mutation p.D519N 0.35 tolerated(0.12) possibly_damaging(0.451) TCGA-D3-A3MU-06 16 53679654 53679654 G A RPGRIP1L Missense_Mutation p.L856F 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 16 56660935 56660935 G A MT1E 3'UTR 0.54 TCGA-D3-A3MU-06 16 57113024 57113024 C T NLRC5 Missense_Mutation p.S1715F 0.22 deleterious(0.04) benign(0.003) TCGA-D3-A3MU-06 16 66844668 66844668 C T NAE1 Missense_Mutation p.E348K 0.38 tolerated(0.46) benign(0.005) TCGA-D3-A3MU-06 16 69997477 69997477 C T CLEC18A Missense_Mutation p.A435V 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-D3-A3MU-06 16 70866849 70866849 C T HYDIN Missense_Mutation p.E4601K 0.46 possibly_damaging(0.801) TCGA-D3-A3MU-06 17 10351324 10351324 C T MYH4 Silent p.R1592R 0.41 TCGA-D3-A3MU-06 17 11554400 11554400 G A DNAH9 Silent p.L704L 0.32 TCGA-D3-A3MU-06 17 11645550 11645550 G A DNAH9 Missense_Mutation p.E2011K 0.38 probably_damaging(0.998) TCGA-D3-A3MU-06 17 12921031 12921031 G A ELAC2 Silent p.S78S 0.36 TCGA-D3-A3MU-06 17 12921032 12921032 G A ELAC2 Missense_Mutation p.S78F 0.36 deleterious(0) probably_damaging(0.994) TCGA-D3-A3MU-06 17 16229221 16229221 A T PIGL 3'UTR 0.29 TCGA-D3-A3MU-06 17 18022649 18022649 G A MYO15A Missense_Mutation p.E179K 0.40 probably_damaging(0.945) TCGA-D3-A3MU-06 17 19285536 19285536 C T MAPK7 Silent p.P640P 0.41 TCGA-D3-A3MU-06 17 26712202 26712202 C T SARM1 Missense_Mutation p.S479F 0.36 deleterious(0.04) possibly_damaging(0.807) TCGA-D3-A3MU-06 17 28296356 28296356 G A EFCAB5 Silent p.K246K 0.33 TCGA-D3-A3MU-06 17 32483500 32483500 G T ASIC2 Missense_Mutation p.Q18K 0.16 tolerated(0.83) benign(0.009) TCGA-D3-A3MU-06 17 33319026 33319026 C T LIG3 Silent p.L420L 0.41 TCGA-D3-A3MU-06 17 34062187 34062187 G A RASL10B 5'UTR 0.40 TCGA-D3-A3MU-06 17 34956603 34956603 C T DHRS11 Nonsense_Mutation p.Q252* 0.41 TCGA-D3-A3MU-06 17 3664730 3664730 G A ITGAE Missense_Mutation p.R134C 0.37 deleterious(0.02) possibly_damaging(0.719) TCGA-D3-A3MU-06 17 38027004 38027004 A G ZPBP2 Missense_Mutation p.K59R 0.40 tolerated(0.57) benign(0.008) TCGA-D3-A3MU-06 17 38954593 38954593 C T KRT28 Missense_Mutation p.G195E 0.39 deleterious(0.01) possibly_damaging(0.739) TCGA-D3-A3MU-06 17 39671705 39671705 C T KRT15 Intron 0.52 TCGA-D3-A3MU-06 17 40312338 40312338 G A KCNH4 Missense_Mutation p.P925L 0.16 tolerated(0.06) benign(0.003) TCGA-D3-A3MU-06 17 41020499 41020499 G A AOC4P RNA 0.42 TCGA-D3-A3MU-06 17 46134783 46134783 G A NFE2L1 Silent p.L297L 0.04 TCGA-D3-A3MU-06 17 46669568 46669568 G A HOXB5 3'UTR 0.34 TCGA-D3-A3MU-06 17 5039147 5039147 C T USP6 Silent p.F196F 0.34 TCGA-D3-A3MU-06 17 51900748 51900748 G A KIF2B Missense_Mutation p.M118I 0.40 tolerated(0.19) benign(0.002) TCGA-D3-A3MU-06 17 58303433 58303433 T A USP32 Missense_Mutation p.T467S 0.27 tolerated(1) benign(0.004) TCGA-D3-A3MU-06 17 61566075 61566075 G A ACE Missense_Mutation p.R791Q 0.25 deleterious(0.02) probably_damaging(0.978) TCGA-D3-A3MU-06 17 61957897 61957897 G A GH2 Missense_Mutation p.L231F 0.41 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-D3-A3MU-06 17 61987391 61987391 G A CSHL1 Intron 0.35 TCGA-D3-A3MU-06 17 6684090 6684090 C T FBXO39 Silent p.I301I 0.44 TCGA-D3-A3MU-06 17 67144907 67144907 A G ABCA10 3'UTR 0.17 TCGA-D3-A3MU-06 17 7124308 7124308 C T ACADVL Silent p.L159L 0.46 TCGA-D3-A3MU-06 17 72576216 72576216 G A CD300LD Silent p.F170F 0.26 TCGA-D3-A3MU-06 17 7365457 7365457 G A ZBTB4 Silent p.L948L 0.32 TCGA-D3-A3MU-06 17 76446418 76446418 G A DNAH17 Missense_Mutation p.P3639L 0.36 benign(0.236) TCGA-D3-A3MU-06 17 7829410 7829410 G A KCNAB3 Missense_Mutation p.T139I 0.39 tolerated(0.52) benign(0.034) TCGA-D3-A3MU-06 17 79517323 79517323 C T C17orf70 Silent p.L399L 0.42 TCGA-D3-A3MU-06 17 80059669 80059669 C T FASN 5'Flank 0.40 TCGA-D3-A3MU-06 18 20832950 20832950 C T CABLES1 Silent p.P491P 0.25 TCGA-D3-A3MU-06 18 28983435 28983435 G A DSG4 Missense_Mutation p.D492N 0.42 deleterious(0.02) benign(0.077) TCGA-D3-A3MU-06 18 31326117 31326117 C T ASXL3 Missense_Mutation p.S2102F 0.32 possibly_damaging(0.737) TCGA-D3-A3MU-06 18 31537435 31537435 G T NOL4 Missense_Mutation p.P428Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 18 34340686 34340686 C T FHOD3 Missense_Mutation p.P1339L 0.47 tolerated(0.14) benign(0.343) TCGA-D3-A3MU-06 18 40503628 40503628 T C RIT2 Missense_Mutation p.K112R 0.22 tolerated(0.12) benign(0.088) TCGA-D3-A3MU-06 18 44560781 44560781 C T TCEB3B Silent p.G285G 0.24 TCGA-D3-A3MU-06 18 44561402 44561402 G A TCEB3B Silent p.L78L 0.25 TCGA-D3-A3MU-06 18 47340565 47340565 C T ACAA2 5'Flank 0.57 TCGA-D3-A3MU-06 18 61465848 61465848 G A SERPINB7 Silent p.K155K 0.26 TCGA-D3-A3MU-06 18 67231815 67231815 C T DOK6 Silent p.F53F 0.13 TCGA-D3-A3MU-06 18 7013944 7013944 G A LAMA1 Missense_Mutation p.S1078F 0.31 deleterious(0.02) possibly_damaging(0.811) TCGA-D3-A3MU-06 19 13004396 13004396 C T GCDH Missense_Mutation p.S145F 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MU-06 19 15511107 15511107 C T AKAP8L Silent p.K349K 0.44 TCGA-D3-A3MU-06 19 16038055 16038055 C T CYP4F11 Missense_Mutation p.M164I 0.38 tolerated(0.1) benign(0.004) TCGA-D3-A3MU-06 19 17988568 17988568 G T SLC5A5 Missense_Mutation p.W245C 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 19 18895837 18895837 C T COMP Missense_Mutation p.D595N 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 19 22154349 22154349 G A ZNF208 Missense_Mutation p.H1163Y 0.41 deleterious(0.03) possibly_damaging(0.757) TCGA-D3-A3MU-06 19 22157489 22157489 C T ZNF208 Missense_Mutation p.G116D 0.33 tolerated(1) benign(0.041) TCGA-D3-A3MU-06 19 23544275 23544275 G A ZNF91 Silent p.S502S 0.30 TCGA-D3-A3MU-06 19 2873586 2873586 C T ZNF556 Silent p.V32V 0.28 TCGA-D3-A3MU-06 19 37905194 37905194 T C ZNF569 Silent p.V122V 0.39 TCGA-D3-A3MU-06 19 38882851 38882851 G A SPRED3 Splice_Site p.X116_splice 0.58 TCGA-D3-A3MU-06 19 38910511 38910511 G A RASGRP4 Nonsense_Mutation p.Q218* 0.21 TCGA-D3-A3MU-06 19 39915194 39915194 C T PLEKHG2 Missense_Mutation p.P1141S 0.34 deleterious_low_confidence(0.03) benign(0.139) TCGA-D3-A3MU-06 19 41386106 41386106 G A CYP2A7 Silent p.S179S 0.29 TCGA-D3-A3MU-06 19 41601888 41601888 G A CYP2A13 3'UTR 0.22 TCGA-D3-A3MU-06 19 43762435 43762435 G A PSG9 Missense_Mutation p.H388Y 0.43 deleterious(0.01) benign(0.38) TCGA-D3-A3MU-06 19 43766069 43766069 C T PSG9 Missense_Mutation p.E218K 0.37 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 19 47646800 47646800 G A SAE1 Missense_Mutation p.E50K 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MU-06 19 49259466 49259466 G A FGF21 5'UTR 0.49 TCGA-D3-A3MU-06 19 49302952 49302952 G A BCAT2 Silent p.V225V 0.43 TCGA-D3-A3MU-06 19 51165655 51165655 G A SHANK1 Missense_Mutation p.S2018L 0.53 unknown(0) TCGA-D3-A3MU-06 19 51470496 51470496 C T KLK6 Silent p.S42S 0.30 TCGA-D3-A3MU-06 19 51517971 51517971 G A KLK10 3'UTR 0.39 TCGA-D3-A3MU-06 19 51563194 51563194 G A KLK13 Silent p.S132S 0.28 TCGA-D3-A3MU-06 19 51563195 51563195 G A KLK13 Missense_Mutation p.S132F 0.28 deleterious(0.02) benign(0.337) TCGA-D3-A3MU-06 19 53994975 53994975 T G ZNF813 Missense_Mutation p.C497G 0.29 deleterious(0) probably_damaging(0.986) TCGA-D3-A3MU-06 19 54515394 54515394 C T CACNG6 Missense_Mutation p.S245F 0.35 tolerated(0.73) benign(0.429) TCGA-D3-A3MU-06 19 55087331 55087331 G A LILRA2 Missense_Mutation p.G337E 0.44 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MU-06 19 55147860 55147860 C T AC009892.10 Intron 0.37 TCGA-D3-A3MU-06 19 56244307 56244307 C T NLRP9 Missense_Mutation p.G297E 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A3MU-06 19 56369074 56369074 G A NLRP4 Silent p.Q105Q 0.30 TCGA-D3-A3MU-06 19 57301315 57301315 G A ZIM2 Silent p.F134F 0.33 TCGA-D3-A3MU-06 19 6007048 6007048 G A RFX2 Silent p.I459I 0.36 TCGA-D3-A3MU-06 19 8592300 8592300 T G MYO1F Missense_Mutation p.K799T 0.44 deleterious(0.01) benign(0.141) TCGA-D3-A3MU-06 19 9058034 9058034 C T MUC16 Silent p.E9804E 0.40 TCGA-D3-A3MU-06 19 9063915 9063915 G A MUC16 Missense_Mutation p.S7844L 0.37 unknown(0) TCGA-D3-A3MU-06 19 990243 990243 C T WDR18 Missense_Mutation p.S159F 0.24 deleterious(0.01) possibly_damaging(0.738) TCGA-D3-A3MU-06 1 101186048 101186048 C T VCAM1 Silent p.I27I 0.26 TCGA-D3-A3MU-06 1 107867541 107867541 G A NTNG1 Missense_Mutation p.G295E 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MU-06 1 110091312 110091312 C T GNAI3 5'UTR 0.38 TCGA-D3-A3MU-06 1 110163659 110163659 C T AMPD2 Silent p.L8L 0.33 TCGA-D3-A3MU-06 1 112524853 112524853 G A KCND3 Missense_Mutation p.R166C 0.30 deleterious(0) possibly_damaging(0.689) TCGA-D3-A3MU-06 1 114380685 114380685 C T PTPN22 Missense_Mutation p.R446Q 0.34 tolerated(0.05) benign(0.392) TCGA-D3-A3MU-06 1 11736152 11736152 G A MAD2L2 Silent p.F126F 0.28 TCGA-D3-A3MU-06 1 1221555 1221555 C T SCNN1D Missense_Mutation p.L270F 0.47 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A3MU-06 1 144859759 144859759 C T PDE4DIP Missense_Mutation p.D2109N 0.14 tolerated(0.06) benign(0.012) TCGA-D3-A3MU-06 1 144874018 144874018 G A PDE4DIP Missense_Mutation p.H1647Y 0.15 tolerated(0.42) possibly_damaging(0.635) TCGA-D3-A3MU-06 1 145534130 145534130 G A ITGA10 Silent p.Q545Q 0.24 TCGA-D3-A3MU-06 1 146757056 146757056 C T CHD1L Missense_Mutation p.P637L 0.25 deleterious(0.02) benign(0.104) TCGA-D3-A3MU-06 1 149784891 149784891 T A HIST2H3D Nonsense_Mutation p.K116* 0.54 TCGA-D3-A3MU-06 1 150259171 150259171 C T C1orf51 Silent p.I321I 0.26 TCGA-D3-A3MU-06 1 150727594 150727594 G A CTSS Silent p.S94S 0.23 TCGA-D3-A3MU-06 1 151026712 151026712 C T CDC42SE1 3'UTR 0.24 TCGA-D3-A3MU-06 1 151108069 151108069 G A SEMA6C Silent p.A477A 0.30 TCGA-D3-A3MU-06 1 152282785 152282785 C T FLG Missense_Mutation p.G1526E 0.24 probably_damaging(0.931) TCGA-D3-A3MU-06 1 152282786 152282786 C T FLG Missense_Mutation p.G1526R 0.24 probably_damaging(0.953) TCGA-D3-A3MU-06 1 152283290 152283290 C T FLG Missense_Mutation p.G1358R 0.53 probably_damaging(0.988) TCGA-D3-A3MU-06 1 152324459 152324459 G A FLG2 Missense_Mutation p.P1935S 0.28 benign(0) TCGA-D3-A3MU-06 1 152777611 152777611 C T LCE1C Missense_Mutation p.G115E 0.32 deleterious_low_confidence(0) unknown(0) TCGA-D3-A3MU-06 1 152882432 152882432 G A IVL Silent p.V53V 0.22 TCGA-D3-A3MU-06 1 152975707 152975707 G A SPRR3 Missense_Mutation p.E71K 0.25 deleterious(0.05) benign(0.138) TCGA-D3-A3MU-06 1 153029049 153029049 G A SPRR2A Missense_Mutation p.P55S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-D3-A3MU-06 1 153313022 153313022 C T PGLYRP4 Missense_Mutation p.G220E 0.19 tolerated(0.9) benign(0.041) TCGA-D3-A3MU-06 1 153513933 153513933 C T S100A5 5'UTR 0.21 TCGA-D3-A3MU-06 1 153730128 153730128 C T INTS3 Silent p.R346R 0.61 TCGA-D3-A3MU-06 1 155324369 155324369 G A ASH1L Missense_Mutation p.R2370C 0.29 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-D3-A3MU-06 1 157516944 157516944 G A FCRL5 Silent p.T32T 0.30 TCGA-D3-A3MU-06 1 158613207 158613207 C T SPTA1 Silent p.K1449K 0.21 TCGA-D3-A3MU-06 1 167023454 167023454 C T GPA33 3'UTR 0.36 TCGA-D3-A3MU-06 1 167095254 167095254 G A DUSP27 Missense_Mutation p.E296K 0.33 tolerated(0.48) benign(0.05) TCGA-D3-A3MU-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.23 deleterious(0.02) benign(0.036) TCGA-D3-A3MU-06 1 169673786 169673786 C T SELL Missense_Mutation p.G243E 0.30 deleterious(0) probably_damaging(0.989) TCGA-D3-A3MU-06 1 17033884 17033884 C T ESPNP RNA 0.46 TCGA-D3-A3MU-06 1 171083427 171083427 G A FMO3 Missense_Mutation p.G370S 0.27 deleterious(0.02) probably_damaging(0.962) TCGA-D3-A3MU-06 1 172377015 172377015 G A DNM3 3'UTR 0.33 TCGA-D3-A3MU-06 1 175046776 175046776 C T TNN Silent p.A74A 0.39 TCGA-D3-A3MU-06 1 175046845 175046845 G A TNN Silent p.K97K 0.25 TCGA-D3-A3MU-06 1 175063248 175063248 G A TNN Missense_Mutation p.D483N 0.31 tolerated(0.14) benign(0.022) TCGA-D3-A3MU-06 1 175116212 175116212 C T TNN 3'UTR 0.31 TCGA-D3-A3MU-06 1 175116213 175116213 C T TNN 3'UTR 0.30 TCGA-D3-A3MU-06 1 176525628 176525628 G A PAPPA2 Missense_Mutation p.R57Q 0.24 tolerated_low_confidence(0.32) benign(0.007) TCGA-D3-A3MU-06 1 176838012 176838012 G A ASTN1 Silent p.F1205F 0.27 TCGA-D3-A3MU-06 1 180031445 180031445 C T CEP350 Nonsense_Mutation p.R1785* 0.49 TCGA-D3-A3MU-06 1 180163448 180163448 C T QSOX1 Silent p.S463S 0.27 TCGA-D3-A3MU-06 1 19180908 19180908 C T TAS1R2 Silent p.R352R 0.35 TCGA-D3-A3MU-06 1 19443892 19443892 G A UBR4 Missense_Mutation p.S3549F 0.38 probably_damaging(0.962) TCGA-D3-A3MU-06 1 197396716 197396716 C T CRB1 Missense_Mutation p.A754V 0.17 tolerated(0.17) possibly_damaging(0.825) TCGA-D3-A3MU-06 1 197890587 197890587 G A LHX9 Silent p.K177K 0.24 TCGA-D3-A3MU-06 1 198672472 198672472 G A PTPRC Missense_Mutation p.G210E 0.29 tolerated(0.79) benign(0.079) TCGA-D3-A3MU-06 1 203138068 203138068 C T MYBPH Silent p.G461G 0.29 TCGA-D3-A3MU-06 1 207651391 207651391 C T CR2 Missense_Mutation p.P1022S 0.14 tolerated(0.1) probably_damaging(0.976) TCGA-D3-A3MU-06 1 209936175 209936175 G C TRAF3IP3 Missense_Mutation p.E171Q 0.19 tolerated(0.19) possibly_damaging(0.517) TCGA-D3-A3MU-06 1 209968716 209968716 C T IRF6 Missense_Mutation p.E143K 0.53 tolerated(0.26) benign(0.021) TCGA-D3-A3MU-06 1 214814560 214814560 C T CENPF Missense_Mutation p.S960F 0.60 possibly_damaging(0.735) TCGA-D3-A3MU-06 1 216850459 216850459 G A ESRRG Missense_Mutation p.S149L 0.30 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MU-06 1 228505801 228505801 G A OBSCN Silent p.T5643T 0.29 TCGA-D3-A3MU-06 1 228505802 228505802 G A OBSCN Missense_Mutation p.A5644T 0.29 possibly_damaging(0.678) TCGA-D3-A3MU-06 1 23417851 23417851 G A LUZP1 Silent p.S968S 0.25 TCGA-D3-A3MU-06 1 237802343 237802343 C T RYR2 Silent p.V2319V 0.22 TCGA-D3-A3MU-06 1 237886483 237886483 G A RYR2 Missense_Mutation p.R3537K 0.24 benign(0.003) TCGA-D3-A3MU-06 1 240286558 240286558 C T FMN2 Silent p.I565I 0.27 TCGA-D3-A3MU-06 1 247163358 247163358 C T ZNF695 Missense_Mutation p.D8N 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A3MU-06 1 248308966 248308966 G A OR2M5 Missense_Mutation p.E173K 0.20 tolerated(0.22) benign(0.119) TCGA-D3-A3MU-06 1 248685728 248685728 C T OR2G6 Nonsense_Mutation p.Q261* 0.54 TCGA-D3-A3MU-06 1 3328323 3328323 C T PRDM16 Missense_Mutation p.S521F 0.37 deleterious(0) possibly_damaging(0.896) TCGA-D3-A3MU-06 1 40310296 40310296 G A TRIT1 Silent p.V341V 0.30 TCGA-D3-A3MU-06 1 43224650 43224650 A G LEPRE1 Silent p.H271H 0.42 TCGA-D3-A3MU-06 1 43396774 43396774 G A SLC2A1 Missense_Mutation p.S73F 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 1 47534309 47534309 G A CYP4Z1 Missense_Mutation p.E65K 0.31 tolerated(0.25) possibly_damaging(0.874) TCGA-D3-A3MU-06 1 55174728 55174728 C T MROH7 Missense_Mutation p.R1237C 0.36 tolerated(0.2) benign(0.006) TCGA-D3-A3MU-06 1 57209928 57209928 C G C1orf168 Missense_Mutation p.E467Q 0.36 deleterious(0.02) possibly_damaging(0.904) TCGA-D3-A3MU-06 1 57417738 57417738 C T C8B Missense_Mutation p.E217K 0.41 deleterious(0) possibly_damaging(0.856) TCGA-D3-A3MU-06 1 57480812 57480812 G A DAB1 Silent p.S396S 0.39 TCGA-D3-A3MU-06 1 58996366 58996366 G A OMA1 Silent p.F349F 0.34 TCGA-D3-A3MU-06 1 62676217 62676217 G A L1TD1 Missense_Mutation p.E591K 0.22 tolerated(0.82) benign(0.078) TCGA-D3-A3MU-06 1 75086460 75086460 C T C1orf173 Missense_Mutation p.G320R 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 1 79385976 79385976 G A ELTD1 Silent p.F451F 0.32 TCGA-D3-A3MU-06 20 3208398 3208398 G A SLC4A11 3'UTR 0.33 TCGA-D3-A3MU-06 20 32379193 32379193 A C ZNF341 Missense_Mutation p.E805A 0.25 deleterious_low_confidence(0.03) benign(0.136) TCGA-D3-A3MU-06 20 43836821 43836821 G A SEMG1 Missense_Mutation p.E295K 0.23 tolerated(0.75) possibly_damaging(0.869) TCGA-D3-A3MU-06 20 46311865 46311865 C T SULF2 Missense_Mutation p.V313I 0.18 tolerated(1) benign(0.007) TCGA-D3-A3MU-06 20 57766256 57766256 C T ZNF831 Missense_Mutation p.P61L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 20 57766649 57766649 G A ZNF831 Missense_Mutation p.R192Q 0.56 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MU-06 20 61598783 61598783 G A SLC17A9 Silent p.G414G 0.60 TCGA-D3-A3MU-06 20 62197555 62197555 T C HELZ2 Missense_Mutation p.T874A 0.16 tolerated(0.13) possibly_damaging(0.765) TCGA-D3-A3MU-06 20 62421379 62421379 A C ZBTB46 Silent p.P244P 0.22 TCGA-D3-A3MU-06 20 9459570 9459570 G A PLCB4 Missense_Mutation p.E1167K 0.33 tolerated_low_confidence(0.98) benign(0) TCGA-D3-A3MU-06 21 26976114 26976114 C T MRPL39 Silent p.V138V 0.34 TCGA-D3-A3MU-06 21 30693789 30693789 T A BACH1 Missense_Mutation p.I63N 0.35 deleterious(0) probably_damaging(0.934) TCGA-D3-A3MU-06 21 30693790 30693790 C G BACH1 Missense_Mutation p.I63M 0.35 tolerated(0.12) possibly_damaging(0.748) TCGA-D3-A3MU-06 21 30961309 30961309 G C GRIK1 Missense_Mutation p.D473E 0.07 tolerated(0.28) benign(0.049) TCGA-D3-A3MU-06 21 47545777 47545777 C T COL6A2 Missense_Mutation p.S683F 0.33 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MU-06 22 17072801 17072801 C T CCT8L2 Missense_Mutation p.E214K 0.28 tolerated(0.32) benign(0.007) TCGA-D3-A3MU-06 22 17280779 17280779 G A XKR3 Silent p.F157F 0.50 TCGA-D3-A3MU-06 22 18300404 18300404 G A MICAL3 Missense_Mutation p.P1675S 0.30 possibly_damaging(0.846) TCGA-D3-A3MU-06 22 19956080 19956080 G A COMT Missense_Mutation p.G213R 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 22 20825720 20825720 T A KLHL22 Missense_Mutation p.I104F 0.49 deleterious(0) probably_damaging(0.952) TCGA-D3-A3MU-06 22 22020298 22020298 G A PPIL2 5'UTR 0.38 TCGA-D3-A3MU-06 22 22712561 22712561 G A IGLV1-47 Missense_Mutation p.D102N 0.51 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-D3-A3MU-06 22 23915708 23915708 G A IGLL1 Silent p.N129N 0.04 TCGA-D3-A3MU-06 22 25115475 25115475 C T PIWIL3 Silent p.P871P 0.53 TCGA-D3-A3MU-06 22 29886423 29886423 G A NEFH Missense_Mutation p.E932K 0.35 tolerated_low_confidence(0.12) unknown(0) TCGA-D3-A3MU-06 22 31521793 31521793 G A INPP5J Intron 0.38 TCGA-D3-A3MU-06 22 31529469 31529469 G C INPP5J Missense_Mutation p.Q435H 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A3MU-06 22 37271915 37271915 C T NCF4 Missense_Mutation p.S283F 0.49 tolerated_low_confidence(0.14) possibly_damaging(0.485) TCGA-D3-A3MU-06 22 37271916 37271916 C T NCF4 Silent p.S283S 0.49 TCGA-D3-A3MU-06 22 37420583 37420583 C T MPST Silent p.S129S 0.33 TCGA-D3-A3MU-06 22 38131150 38131150 G A TRIOBP Missense_Mutation p.D1603N 0.29 deleterious_low_confidence(0.02) benign(0.019) TCGA-D3-A3MU-06 22 41572463 41572463 C T EP300 Silent p.D1664D 0.44 TCGA-D3-A3MU-06 22 43687051 43687051 C T SCUBE1 Splice_Site p.X162_splice 0.50 TCGA-D3-A3MU-06 22 45768171 45768171 C T SMC1B Missense_Mutation p.G687D 0.57 tolerated(0.96) benign(0) TCGA-D3-A3MU-06 2 107041475 107041475 C T RGPD3 Missense_Mutation p.G983E 0.19 deleterious(0.04) benign(0.05) TCGA-D3-A3MU-06 2 108626771 108626771 G A SLC5A7 Silent p.T399T 0.47 TCGA-D3-A3MU-06 2 113736882 113736882 G A IL36G Missense_Mutation p.R47Q 0.27 deleterious(0.05) possibly_damaging(0.884) TCGA-D3-A3MU-06 2 116485450 116485450 G A DPP10 Missense_Mutation p.R216Q 0.46 deleterious(0.04) benign(0.142) TCGA-D3-A3MU-06 2 120404626 120404626 G A PCDP1 Missense_Mutation p.R773H 0.15 tolerated(0.38) benign(0.021) TCGA-D3-A3MU-06 2 128186126 128186126 C T PROC Silent p.L330L 0.24 TCGA-D3-A3MU-06 2 130877853 130877853 T C POTEF Missense_Mutation p.N79S 0.23 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-D3-A3MU-06 2 131976306 131976306 G A POTEE Missense_Mutation p.G111R 0.49 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-D3-A3MU-06 2 135676417 135676417 G A CCNT2 5'UTR 0.16 TCGA-D3-A3MU-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.35 deleterious(0) unknown(0) TCGA-D3-A3MU-06 2 141215031 141215031 C T LRP1B Splice_Site p.X3272_splice 0.25 TCGA-D3-A3MU-06 2 141253291 141253291 C T LRP1B Silent p.L2959L 0.53 TCGA-D3-A3MU-06 2 141986902 141986902 C T LRP1B Missense_Mutation p.E234K 0.47 benign(0.292) TCGA-D3-A3MU-06 2 152474902 152474902 C T NEB Missense_Mutation p.E3655K 0.29 possibly_damaging(0.869) TCGA-D3-A3MU-06 2 152496516 152496516 G A NEB Missense_Mutation p.S2915F 0.47 probably_damaging(1) TCGA-D3-A3MU-06 2 153575233 153575233 C T ARL6IP6 Missense_Mutation p.T32I 0.21 tolerated_low_confidence(0.13) benign(0.006) TCGA-D3-A3MU-06 2 158283932 158283932 C T CYTIP Silent p.T159T 0.40 TCGA-D3-A3MU-06 2 160289403 160289403 C T BAZ2B Missense_Mutation p.E589K 0.43 benign(0.292) TCGA-D3-A3MU-06 2 160698800 160698800 G A LY75-CD302 Missense_Mutation p.S1079F 0.33 deleterious(0) possibly_damaging(0.663) TCGA-D3-A3MU-06 2 161143521 161143521 G A RBMS1 Missense_Mutation p.P239S 0.22 tolerated(0.21) benign(0.022) TCGA-D3-A3MU-06 2 165793867 165793867 G A SLC38A11 Missense_Mutation p.P148S 0.54 tolerated(0.2) benign(0.084) TCGA-D3-A3MU-06 2 166165718 166165718 C T SCN2A Nonsense_Mutation p.R217* 0.23 TCGA-D3-A3MU-06 2 166904225 166904225 C T SCN1A Missense_Mutation p.G361D 0.40 deleterious(0.05) probably_damaging(1) TCGA-D3-A3MU-06 2 16743404 16743404 C T FAM49A Missense_Mutation p.A102T 0.49 tolerated(0.33) benign(0.236) TCGA-D3-A3MU-06 2 17697177 17697177 C T RAD51AP2 Missense_Mutation p.E836K 0.52 deleterious(0.03) probably_damaging(0.979) TCGA-D3-A3MU-06 2 179414578 179414578 A T TTN Missense_Mutation p.V30624D 0.49 TCGA-D3-A3MU-06 2 179425166 179425166 C T TTN Missense_Mutation p.E28565K 0.28 TCGA-D3-A3MU-06 2 179478995 179478995 C T TTN Missense_Mutation p.D16377N 0.53 TCGA-D3-A3MU-06 2 179500305 179500305 C T TTN Missense_Mutation p.E13916K 0.25 TCGA-D3-A3MU-06 2 179592993 179592993 C T TTN Missense_Mutation p.E6520K 0.20 TCGA-D3-A3MU-06 2 185801485 185801485 C T ZNF804A Silent p.S454S 0.49 TCGA-D3-A3MU-06 2 206480299 206480299 C T PARD3B Missense_Mutation p.P1065L 0.28 tolerated(0.33) benign(0.029) TCGA-D3-A3MU-06 2 207174383 207174383 G A ZDBF2 Missense_Mutation p.D1711N 0.42 tolerated(0.15) possibly_damaging(0.539) TCGA-D3-A3MU-06 2 211299265 211299265 G A LANCL1 Silent p.F382F 0.40 TCGA-D3-A3MU-06 2 212483927 212483927 G A ERBB4 Missense_Mutation p.P759L 0.29 deleterious(0.03) possibly_damaging(0.483) TCGA-D3-A3MU-06 2 212483928 212483928 G A ERBB4 Missense_Mutation p.P759S 0.30 deleterious(0.03) possibly_damaging(0.668) TCGA-D3-A3MU-06 2 220037718 220037718 G A CNPPD1 Missense_Mutation p.R275C 0.25 deleterious(0.05) benign(0.119) TCGA-D3-A3MU-06 2 222320320 222320320 C T EPHA4 Silent p.S554S 0.22 TCGA-D3-A3MU-06 2 227876987 227876987 C T COL4A4 Missense_Mutation p.G1415S 0.30 unknown(0) TCGA-D3-A3MU-06 2 227912266 227912266 C T COL4A4 Splice_Site p.X1072_splice 0.19 TCGA-D3-A3MU-06 2 228882839 228882839 G A SPHKAP Missense_Mutation p.P911S 0.45 tolerated(0.06) probably_damaging(1) TCGA-D3-A3MU-06 2 238671495 238671495 C G LRRFIP1 Missense_Mutation p.S380C 0.38 deleterious(0) probably_damaging(0.95) TCGA-D3-A3MU-06 2 242716331 242716331 C T GAL3ST2 5'UTR 0.40 TCGA-D3-A3MU-06 2 25179971 25179971 C T DNAJC27 Missense_Mutation p.G157R 0.40 deleterious(0) probably_damaging(0.982) TCGA-D3-A3MU-06 2 32754816 32754816 A T BIRC6 Nonsense_Mutation p.K4007* 0.56 TCGA-D3-A3MU-06 2 43937246 43937246 C T PLEKHH2 Missense_Mutation p.S695F 0.25 deleterious(0.02) benign(0.013) TCGA-D3-A3MU-06 2 43970996 43970996 C T PLEKHH2 Silent p.T1141T 0.20 TCGA-D3-A3MU-06 2 62115663 62115663 G A CCT4 5'UTR 0.35 TCGA-D3-A3MU-06 2 71762204 71762204 C T DYSF Silent p.I478I 0.47 TCGA-D3-A3MU-06 2 71906294 71906294 C T DYSF Missense_Mutation p.L1998F 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 2 73474896 73474896 C T CCT7 Nonsense_Mutation p.Q209* 0.32 TCGA-D3-A3MU-06 2 73718043 73718043 C T ALMS1 Missense_Mutation p.P2985L 0.34 benign(0.334) TCGA-D3-A3MU-06 2 74834230 74834230 G A M1AP Silent p.L183L 0.22 TCGA-D3-A3MU-06 2 89100634 89100634 A T ANKRD36BP2 RNA 0.41 TCGA-D3-A3MU-06 2 95542331 95542331 C T TEKT4 Silent p.S375S 0.39 TCGA-D3-A3MU-06 2 98709590 98709590 A T VWA3B Missense_Mutation p.E12V 0.57 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-D3-A3MU-06 3 100497219 100497219 C T ABI3BP Silent p.G703G 0.26 TCGA-D3-A3MU-06 3 10413585 10413585 C T ATP2B2 Missense_Mutation p.E523K 0.41 tolerated(0.6) benign(0.004) TCGA-D3-A3MU-06 3 11606380 11606380 G A VGLL4 Missense_Mutation p.S129F 0.48 tolerated(0.1) possibly_damaging(0.578) TCGA-D3-A3MU-06 3 12195173 12195173 G A TIMP4 Missense_Mutation p.P173S 0.34 tolerated(0.27) benign(0.062) TCGA-D3-A3MU-06 3 124117547 124117547 C T KALRN Silent p.D723D 0.30 TCGA-D3-A3MU-06 3 124438000 124438000 G A RP11-71H17.7 5'Flank 0.41 TCGA-D3-A3MU-06 3 126220114 126220114 C T UROC1 Silent p.R364R 0.27 TCGA-D3-A3MU-06 3 133098691 133098691 C T TMEM108 Missense_Mutation p.P46S 0.39 tolerated_low_confidence(0.36) probably_damaging(0.996) TCGA-D3-A3MU-06 3 134346612 134346612 C T KY Missense_Mutation p.G129E 0.35 tolerated(0.3) benign(0.1) TCGA-D3-A3MU-06 3 134825302 134825302 G A EPHB1 Missense_Mutation p.G273E 0.33 deleterious(0) possibly_damaging(0.764) TCGA-D3-A3MU-06 3 142234333 142234333 G A ATR Silent p.T1469T 0.47 TCGA-D3-A3MU-06 3 142234334 142234334 G A ATR Missense_Mutation p.T1469I 0.47 tolerated(0.44) benign(0.004) TCGA-D3-A3MU-06 3 151164770 151164770 C T IGSF10 Missense_Mutation p.S1000N 0.39 tolerated(0.45) benign(0.001) TCGA-D3-A3MU-06 3 160120471 160120471 C T SMC4 Missense_Mutation p.S109F 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 3 189604206 189604206 C T TP63 Missense_Mutation p.S458L 0.41 deleterious(0) benign(0.162) TCGA-D3-A3MU-06 3 189704603 189704603 C T LEPREL1 Missense_Mutation p.G388S 0.34 tolerated(0.41) benign(0.029) TCGA-D3-A3MU-06 3 193042770 193042770 C T ATP13A5 Silent p.Q519Q 0.29 TCGA-D3-A3MU-06 3 193176921 193176921 C T ATP13A4 Silent p.G541G 0.36 TCGA-D3-A3MU-06 3 27760940 27760940 T G EOMES Missense_Mutation p.N357H 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 3 3085306 3085306 G A CNTN4 Nonsense_Mutation p.W910* 0.39 TCGA-D3-A3MU-06 3 38357863 38357863 C T SLC22A14 Silent p.I527I 0.43 TCGA-D3-A3MU-06 3 38888832 38888832 G A SCN11A Missense_Mutation p.P1577S 0.36 tolerated(0.07) benign(0.026) TCGA-D3-A3MU-06 3 42906308 42906308 C T ACKR2 Missense_Mutation p.S105F 0.37 tolerated(0.66) benign(0.133) TCGA-D3-A3MU-06 3 42982837 42982837 C T KRBOX1 Silent p.A52A 0.33 TCGA-D3-A3MU-06 3 46490500 46490500 C T LTF Missense_Mutation p.E356K 0.29 tolerated(0.51) benign(0.004) TCGA-D3-A3MU-06 3 48658415 48658415 C T TMEM89 Missense_Mutation p.A114T 0.37 tolerated(1) benign(0.006) TCGA-D3-A3MU-06 3 55038833 55038833 G A CACNA2D3 Missense_Mutation p.E912K 0.38 tolerated(0.37) benign(0.014) TCGA-D3-A3MU-06 3 57232422 57232422 G A HESX1 Silent p.I152I 0.24 TCGA-D3-A3MU-06 3 7620708 7620708 C T GRM7 Silent p.I705I 0.24 TCGA-D3-A3MU-06 3 97983992 97983992 G T OR5H6 Missense_Mutation p.M288I 0.43 tolerated(0.62) benign(0.02) TCGA-D3-A3MU-06 3 98073360 98073360 C T OR5K4 Silent p.I221I 0.29 TCGA-D3-A3MU-06 4 104640625 104640625 G A TACR3 Missense_Mutation p.P70S 0.24 tolerated(0.26) benign(0.001) TCGA-D3-A3MU-06 4 110789085 110789085 C T LRIT3 Missense_Mutation p.S293L 0.20 tolerated(0.4) benign(0.03) TCGA-D3-A3MU-06 4 113351887 113351887 C T ALPK1 Missense_Mutation p.S395F 0.62 tolerated(0.1) benign(0.077) TCGA-D3-A3MU-06 4 114275702 114275702 C T ANK2 Silent p.S1976S 0.14 TCGA-D3-A3MU-06 4 141600839 141600839 G A TBC1D9 Silent p.V173V 0.56 TCGA-D3-A3MU-06 4 146463845 146463845 G A SMAD1 Missense_Mutation p.R257K 0.59 tolerated(0.92) benign(0.012) TCGA-D3-A3MU-06 4 153573856 153573856 G A TMEM154 Silent p.F96F 0.16 TCGA-D3-A3MU-06 4 154624818 154624818 G A TLR2 Silent p.K253K 0.33 TCGA-D3-A3MU-06 4 158254467 158254467 A C GRIA2 Missense_Mutation p.I373L 0.23 tolerated(1) benign(0.003) TCGA-D3-A3MU-06 4 162306951 162306951 T G FSTL5 Missense_Mutation p.E831A 0.54 deleterious(0) probably_damaging(0.952) TCGA-D3-A3MU-06 4 164271592 164271592 T A NPY5R Missense_Mutation p.F56Y 0.63 deleterious(0.01) possibly_damaging(0.74) TCGA-D3-A3MU-06 4 166916254 166916254 G A TLL1 Missense_Mutation p.E186K 0.58 deleterious(0.01) possibly_damaging(0.898) TCGA-D3-A3MU-06 4 173852374 173852374 G A GALNTL6 Silent p.R368R 0.18 TCGA-D3-A3MU-06 4 175899235 175899235 G A ADAM29 3'UTR 0.21 TCGA-D3-A3MU-06 4 176556176 176556176 C T GPM6A Nonsense_Mutation p.W239* 0.08 TCGA-D3-A3MU-06 4 183672951 183672951 A C TENM3 Splice_Site p.X1210_splice 0.23 TCGA-D3-A3MU-06 4 186544571 186544571 C T SORBS2 Missense_Mutation p.R767Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 4 3240564 3240564 G A HTT Missense_Mutation p.S3025N 0.15 benign(0.002) TCGA-D3-A3MU-06 4 39409050 39409050 G A KLB Missense_Mutation p.D161N 0.42 tolerated(0.94) benign(0.013) TCGA-D3-A3MU-06 4 42596369 42596369 C T ATP8A1 Intron 0.36 TCGA-D3-A3MU-06 4 44624578 44624578 G A YIPF7 Silent p.I232I 0.31 TCGA-D3-A3MU-06 4 46305590 46305590 C T GABRA2 Missense_Mutation p.R248K 0.45 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 4 48851964 48851964 T C OCIAD1 Missense_Mutation p.L81P 0.26 deleterious(0) possibly_damaging(0.696) TCGA-D3-A3MU-06 4 54439916 54439916 T G LNX1 Missense_Mutation p.Q85P 0.09 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A3MU-06 4 6083350 6083350 C T JAKMIP1 Missense_Mutation p.E363K 0.28 deleterious(0.01) possibly_damaging(0.487) TCGA-D3-A3MU-06 4 69696590 69696590 G A UGT2B10 Missense_Mutation p.R527K 0.64 tolerated(0.3) benign(0.001) TCGA-D3-A3MU-06 4 76943561 76943561 G A CXCL10 Missense_Mutation p.S79L 0.26 tolerated(0.1) benign(0.212) TCGA-D3-A3MU-06 4 8607826 8607826 C A CPZ Missense_Mutation p.P274T 0.34 tolerated(0.16) benign(0.11) TCGA-D3-A3MU-06 4 89326027 89326027 G A HERC6 Splice_Site p.X365_splice 0.12 TCGA-D3-A3MU-06 4 89389521 89389521 T A HERC5 Nonsense_Mutation p.L361* 0.61 TCGA-D3-A3MU-06 4 98480174 98480174 G A STPG2 3'UTR 0.16 TCGA-D3-A3MU-06 5 101735412 101735412 A - SLCO6A1 Frame_Shift_Del p.L554* 0.16 TCGA-D3-A3MU-06 5 126667027 126667027 G A MEGF10 Silent p.L9L 0.22 TCGA-D3-A3MU-06 5 128887561 128887561 G A ADAMTS19 Missense_Mutation p.D439N 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 5 131671623 131671623 C T SLC22A4 Silent p.N458N 0.06 TCGA-D3-A3MU-06 5 131823654 131823654 C T IRF1 Missense_Mutation p.D51N 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 5 134785033 134785033 C T TIFAB 3'UTR 0.67 TCGA-D3-A3MU-06 5 135561737 135561737 C T TRPC7 Silent p.L749L 0.46 TCGA-D3-A3MU-06 5 13737548 13737548 C T DNAH5 Silent p.R3756R 0.79 TCGA-D3-A3MU-06 5 13919443 13919443 G A DNAH5 Nonsense_Mutation p.Q273* 0.87 TCGA-D3-A3MU-06 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.77 deleterious_low_confidence(0.02) benign(0.081) TCGA-D3-A3MU-06 5 140242736 140242736 C T AC005609.1 Nonsense_Mutation p.W80* 0.88 TCGA-D3-A3MU-06 5 140263294 140263294 G T PCDHA13 Missense_Mutation p.D481Y 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MU-06 5 140263666 140263666 G C PCDHA13 Missense_Mutation p.A605P 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A3MU-06 5 140346950 140346950 T G PCDHAC2 Missense_Mutation p.L200R 0.79 tolerated(1) benign(0.158) TCGA-D3-A3MU-06 5 140474740 140474740 G A PCDHB2 Silent p.E122E 0.87 TCGA-D3-A3MU-06 5 140741165 140741165 C T PCDHGB2 Missense_Mutation p.S488F 0.86 deleterious(0.01) benign(0.33) TCGA-D3-A3MU-06 5 147582573 147582573 A G SPINK6 5'UTR 0.86 TCGA-D3-A3MU-06 5 156589453 156589453 C T FAM71B 3'UTR 0.85 TCGA-D3-A3MU-06 5 168620526 168620526 G A SLIT3 Missense_Mutation p.L124F 0.79 tolerated(0.14) probably_damaging(0.98) TCGA-D3-A3MU-06 5 176931361 176931361 C T DOK3 Missense_Mutation p.E372K 0.66 tolerated(0.36) benign(0.005) TCGA-D3-A3MU-06 5 178541256 178541256 G T ADAMTS2 Missense_Mutation p.P1083Q 0.06 deleterious(0) possibly_damaging(0.757) TCGA-D3-A3MU-06 5 195069 195069 G A LRRC14B Silent p.L382L 0.17 TCGA-D3-A3MU-06 5 26915810 26915810 C T CDH9 Missense_Mutation p.D151N 0.84 deleterious(0) probably_damaging(0.995) TCGA-D3-A3MU-06 5 33527455 33527455 C T ADAMTS12 Silent p.K1541K 0.11 TCGA-D3-A3MU-06 5 35065883 35065883 C T PRLR Missense_Mutation p.D393N 0.33 tolerated(0.2) benign(0.014) TCGA-D3-A3MU-06 5 35871203 35871203 G A IL7R Missense_Mutation p.G142E 0.25 tolerated(1) benign(0.001) TCGA-D3-A3MU-06 5 36629589 36629589 G A SLC1A3 Missense_Mutation p.M73I 0.20 deleterious(0.04) benign(0.217) TCGA-D3-A3MU-06 5 40958182 40958182 G A C7 Silent p.V436V 0.57 TCGA-D3-A3MU-06 5 41161962 41161962 C T C6 Splice_Site p.X431_splice 0.63 TCGA-D3-A3MU-06 5 41176686 41176686 C G C6 Missense_Mutation p.L353F 0.12 deleterious(0) probably_damaging(0.979) TCGA-D3-A3MU-06 5 43446415 43446415 G A C5orf28 Missense_Mutation p.S186L 0.68 tolerated(0.39) benign(0.001) TCGA-D3-A3MU-06 5 50055551 50055551 C T PARP8 Missense_Mutation p.H87Y 0.19 deleterious_low_confidence(0.05) benign(0.001) TCGA-D3-A3MU-06 5 50123853 50123853 G A PARP8 Missense_Mutation p.A685T 0.56 tolerated(0.8) benign(0.003) TCGA-D3-A3MU-06 5 50137844 50137844 A G PARP8 Missense_Mutation p.E836G 0.62 deleterious(0.01) benign(0.359) TCGA-D3-A3MU-06 5 52402951 52402951 C A MOCS2 Silent p.P18P 0.56 TCGA-D3-A3MU-06 5 71756888 71756888 C A ZNF366 Missense_Mutation p.G146W 0.62 tolerated_low_confidence(0.06) benign(0.039) TCGA-D3-A3MU-06 5 75757427 75757427 G A IQGAP2 Missense_Mutation p.E27K 0.13 deleterious(0) possibly_damaging(0.789) TCGA-D3-A3MU-06 5 876234 876234 C T BRD9 Silent p.T455T 0.20 TCGA-D3-A3MU-06 5 96133005 96133005 G A ERAP1 Missense_Mutation p.S224F 0.64 deleterious(0) possibly_damaging(0.622) TCGA-D3-A3MU-06 5 96503652 96503652 T A RIOK2 Missense_Mutation p.T306S 0.63 tolerated(0.11) benign(0.051) TCGA-D3-A3MU-06 5 99921984 99921984 G A FAM174A 3'UTR 0.33 TCGA-D3-A3MU-06 6 10804012 10804012 C T MAK Missense_Mutation p.G202R 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 6 116599600 116599600 T A TSPYL1 3'UTR 0.42 TCGA-D3-A3MU-06 6 117073696 117073696 C T FAM162B 3'UTR 0.17 TCGA-D3-A3MU-06 6 117896389 117896389 A T GOPC Missense_Mutation p.Y201N 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A3MU-06 6 123376971 123376971 C T CLVS2 Silent p.N232N 0.39 TCGA-D3-A3MU-06 6 127898371 127898371 C T C6orf58 Missense_Mutation p.S14F 0.53 deleterious(0.04) benign(0.002) TCGA-D3-A3MU-06 6 130535633 130535633 C T SAMD3 Missense_Mutation p.D40N 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MU-06 6 134349844 134349844 G T SLC2A12 Silent p.T373T 0.25 TCGA-D3-A3MU-06 6 136599700 136599700 G A BCLAF1 Nonsense_Mutation p.R107* 0.24 TCGA-D3-A3MU-06 6 151894590 151894590 T A CCDC170 Silent p.I352I 0.43 TCGA-D3-A3MU-06 6 151936725 151936725 G T CCDC170 Nonsense_Mutation p.E620* 0.34 TCGA-D3-A3MU-06 6 152737953 152737953 G A SYNE1 Silent p.F1873F 0.27 TCGA-D3-A3MU-06 6 152786573 152786573 C T SYNE1 Missense_Mutation p.M584I 0.35 benign(0.09) TCGA-D3-A3MU-06 6 155458688 155458688 A T TIAM2 Missense_Mutation p.E524D 0.20 tolerated(0.74) benign(0.002) TCGA-D3-A3MU-06 6 28473512 28473512 C T GPX6 Missense_Mutation p.E143K 0.17 tolerated(0.45) benign(0.034) TCGA-D3-A3MU-06 6 29079811 29079811 C T OR2J3 Silent p.I48I 0.45 TCGA-D3-A3MU-06 6 29395399 29395399 C T OR11A1 Missense_Mutation p.G7E 0.47 tolerated(0.4) benign(0.011) TCGA-D3-A3MU-06 6 30672602 30672602 G A MDC1 Missense_Mutation p.P1453L 0.46 tolerated(0.09) possibly_damaging(0.879) TCGA-D3-A3MU-06 6 30955141 30955141 A C MUC21 Missense_Mutation p.T397P 0.21 deleterious(0.01) unknown(0) TCGA-D3-A3MU-06 6 31431775 31431775 C T HCP5 RNA 0.12 TCGA-D3-A3MU-06 6 31911032 31911032 G A CFB Missense_Mutation p.G311E 0.43 deleterious(0) possibly_damaging(0.863) TCGA-D3-A3MU-06 6 33131371 33131371 C T COL11A2 3'UTR 0.52 TCGA-D3-A3MU-06 6 36651871 36651871 C G CDKN1A Intron 0.27 TCGA-D3-A3MU-06 6 39855359 39855359 T C DAAM2 Missense_Mutation p.L684P 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 6 41168808 41168808 G A TREML2 5'UTR 0.34 TCGA-D3-A3MU-06 6 41204224 41204224 G A TREML4 Silent p.R169R 0.16 TCGA-D3-A3MU-06 6 41708329 41708329 C T PGC Missense_Mutation p.G223R 0.03 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3MU-06 6 47846804 47846804 G A PTCHD4 Silent p.I592I 0.14 TCGA-D3-A3MU-06 6 55147037 55147037 G A HCRTR2 Missense_Mutation p.E374K 0.06 deleterious(0) possibly_damaging(0.87) TCGA-D3-A3MU-06 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 6 56997930 56997930 C T ZNF451 Missense_Mutation p.P172L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 6 6222267 6222267 A C F13A1 Missense_Mutation p.W371G 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 6 69728368 69728368 C T BAI3 Missense_Mutation p.S695L 0.30 tolerated(0.56) benign(0.138) TCGA-D3-A3MU-06 6 73102459 73102459 G A RIMS1 Missense_Mutation p.G1522E 0.42 deleterious(0) probably_damaging(0.989) TCGA-D3-A3MU-06 6 76022822 76022822 G A FILIP1 Missense_Mutation p.P909L 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 6 80631503 80631503 G A ELOVL4 Missense_Mutation p.A127V 0.50 tolerated(0.15) possibly_damaging(0.874) TCGA-D3-A3MU-06 6 84269879 84269879 A G SNAP91 Missense_Mutation p.F859L 0.26 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A3MU-06 6 84292059 84292059 G A SNAP91 Silent p.F677F 0.33 TCGA-D3-A3MU-06 6 84371229 84371229 C T SNAP91 Silent p.V148V 0.37 TCGA-D3-A3MU-06 6 84799080 84799080 C T MRAP2 Silent p.I166I 0.40 TCGA-D3-A3MU-06 6 85447026 85447026 G A TBX18 Missense_Mutation p.H401Y 0.47 tolerated(0.11) possibly_damaging(0.775) TCGA-D3-A3MU-06 7 100349627 100349627 C T ZAN Silent p.P633P 0.48 TCGA-D3-A3MU-06 7 100684421 100684421 C T MUC17 Missense_Mutation p.L3242F 0.36 benign(0.271) TCGA-D3-A3MU-06 7 103003164 103003164 C T PSMC2 Missense_Mutation p.P152S 0.41 tolerated(0.39) possibly_damaging(0.637) TCGA-D3-A3MU-06 7 104747620 104747620 C T KMT2E Missense_Mutation p.S952F 0.47 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A3MU-06 7 129662210 129662210 G A ZC3HC1 Silent p.T463T 0.36 TCGA-D3-A3MU-06 7 131832690 131832690 G A PLXNA4 Silent p.S1611S 0.48 TCGA-D3-A3MU-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-D3-A3MU-06 7 141730175 141730175 C T MGAM Missense_Mutation p.A412V 0.54 deleterious(0.05) benign(0.333) TCGA-D3-A3MU-06 7 141766457 141766457 C T MGAM Intron 0.38 TCGA-D3-A3MU-06 7 141955016 141955016 C T PRSS58 Missense_Mutation p.D99N 0.32 tolerated(0.27) benign(0.334) TCGA-D3-A3MU-06 7 142001108 142001108 C T TRBV2 Missense_Mutation p.S34F 0.45 TCGA-D3-A3MU-06 7 142627507 142627507 C T TRPV5 Missense_Mutation p.E55K 0.37 deleterious(0.05) benign(0.1) TCGA-D3-A3MU-06 7 144098156 144098156 C T NOBOX Missense_Mutation p.R276Q 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MU-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.36 deleterious(0) possibly_damaging(0.466) TCGA-D3-A3MU-06 7 150217107 150217107 G A GIMAP7 Silent p.G15G 0.46 TCGA-D3-A3MU-06 7 150502078 150502078 C T TMEM176A 3'UTR 0.50 TCGA-D3-A3MU-06 7 157926650 157926650 C T PTPRN2 Silent p.R425R 0.84 TCGA-D3-A3MU-06 7 18875593 18875593 G A HDAC9 Missense_Mutation p.G886E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 7 20824282 20824282 T C SP8 Missense_Mutation p.Y385C 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 7 21940839 21940839 T G DNAH11 Silent p.V4513V 0.38 TCGA-D3-A3MU-06 7 29105639 29105639 C T CPVL Silent p.T321T 0.47 TCGA-D3-A3MU-06 7 30693178 30693178 C T CRHR2 Silent p.Q405Q 0.39 TCGA-D3-A3MU-06 7 30793423 30793423 C T INMT Silent p.S77S 0.38 TCGA-D3-A3MU-06 7 30963269 30963269 G C AQP1 3'UTR 0.06 TCGA-D3-A3MU-06 7 34888116 34888116 C T NPSR1 Missense_Mutation p.P289L 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 7 35289643 35289643 A C TBX20 Missense_Mutation p.I100M 0.17 deleterious(0.03) possibly_damaging(0.887) TCGA-D3-A3MU-06 7 35289644 35289644 A G TBX20 Missense_Mutation p.I100T 0.16 deleterious(0.04) benign(0.186) TCGA-D3-A3MU-06 7 36194537 36194537 C T EEPD1 Missense_Mutation p.P202S 0.42 deleterious(0.04) benign(0.077) TCGA-D3-A3MU-06 7 39500170 39500170 T G POU6F2 Missense_Mutation p.V476G 0.41 deleterious(0.04) unknown(0) TCGA-D3-A3MU-06 7 43483963 43483963 G A HECW1 Missense_Mutation p.E398K 0.37 tolerated_low_confidence(0.41) benign(0.024) TCGA-D3-A3MU-06 7 44104852 44104852 C T PGAM2 Missense_Mutation p.G93R 0.43 deleterious(0.02) possibly_damaging(0.636) TCGA-D3-A3MU-06 7 44574126 44574126 G A NPC1L1 Silent p.L696L 0.33 TCGA-D3-A3MU-06 7 5427387 5427387 G A TNRC18 Missense_Mutation p.R690W 0.35 probably_damaging(0.998) TCGA-D3-A3MU-06 7 5427388 5427388 G A TNRC18 Silent p.A689A 0.35 TCGA-D3-A3MU-06 7 57187752 57187752 C T ZNF479 Missense_Mutation p.R457K 0.36 tolerated(0.95) benign(0.05) TCGA-D3-A3MU-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.20 deleterious(0) possibly_damaging(0.869) TCGA-D3-A3MU-06 7 65157765 65157765 C T INTS4L2 RNA 0.18 TCGA-D3-A3MU-06 7 6624874 6624874 A T ZDHHC4 Missense_Mutation p.T242S 0.39 tolerated(0.09) possibly_damaging(0.585) TCGA-D3-A3MU-06 7 6624875 6624875 C T ZDHHC4 Missense_Mutation p.T242M 0.38 tolerated(0.19) possibly_damaging(0.79) TCGA-D3-A3MU-06 7 71130429 71130429 C T WBSCR17 Missense_Mutation p.P372S 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A3MU-06 7 72413470 72413470 C T POM121 Missense_Mutation p.P715S 0.22 tolerated(0.23) benign(0.164) TCGA-D3-A3MU-06 7 72657732 72657732 G A GTF2IRD2P1 RNA 0.42 TCGA-D3-A3MU-06 7 82586245 82586245 C T PCLO Missense_Mutation p.E1342K 0.42 unknown(0) TCGA-D3-A3MU-06 7 82595501 82595501 C T PCLO Silent p.E1201E 0.49 TCGA-D3-A3MU-06 7 82784668 82784668 G A PCLO Missense_Mutation p.P430L 0.34 possibly_damaging(0.702) TCGA-D3-A3MU-06 7 82785194 82785194 C T PCLO Missense_Mutation p.G255R 0.25 unknown(0) TCGA-D3-A3MU-06 7 86817483 86817483 C T DMTF1 Missense_Mutation p.S426F 0.47 deleterious(0.02) benign(0.121) TCGA-D3-A3MU-06 7 99521204 99521204 C T GJC3 Silent p.Q268Q 0.44 TCGA-D3-A3MU-06 7 99796914 99796914 C G STAG3 Missense_Mutation p.D499E 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MU-06 8 102678975 102678975 C T GRHL2 3'UTR 0.45 TCGA-D3-A3MU-06 8 103573072 103573072 C T ODF1 Missense_Mutation p.P238L 0.58 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A3MU-06 8 104927787 104927787 G A RIMS2 Missense_Mutation p.G626E 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MU-06 8 108264041 108264041 G A ANGPT1 3'UTR 0.28 TCGA-D3-A3MU-06 8 108315580 108315580 C T ANGPT1 Missense_Mutation p.G275E 0.36 tolerated(1) benign(0.021) TCGA-D3-A3MU-06 8 121379437 121379437 G A COL14A1 Missense_Mutation p.G1702E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 8 124195487 124195487 G A FAM83A Missense_Mutation p.E131K 0.22 tolerated(0.2) possibly_damaging(0.744) TCGA-D3-A3MU-06 8 144621206 144621206 G A ZC3H3 Missense_Mutation p.L111F 0.51 tolerated(0.12) benign(0.059) TCGA-D3-A3MU-06 8 144947384 144947384 C T EPPK1 Missense_Mutation p.G13D 0.31 benign(0.001) TCGA-D3-A3MU-06 8 145111918 145111918 G A OPLAH Silent p.L547L 0.26 TCGA-D3-A3MU-06 8 20003198 20003198 C T SLC18A1 3'UTR 0.50 TCGA-D3-A3MU-06 8 21951976 21951977 - GGCC FAM160B2 Frame_Shift_Ins p.F26Gfs*19 0.50 TCGA-D3-A3MU-06 8 22442600 22442600 G A PDLIM2 Missense_Mutation p.S379N 0.28 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A3MU-06 8 24356778 24356778 G A ADAM7 Missense_Mutation p.M624I 0.18 tolerated(1) benign(0) TCGA-D3-A3MU-06 8 2976018 2976018 G A CSMD1 Silent p.F2111F 0.23 TCGA-D3-A3MU-06 8 52284631 52284631 C T PXDNL Missense_Mutation p.E1235K 0.64 deleterious(0) probably_damaging(0.971) TCGA-D3-A3MU-06 8 52321450 52321450 C T PXDNL Missense_Mutation p.D912N 0.58 tolerated(0.21) possibly_damaging(0.597) TCGA-D3-A3MU-06 8 55537465 55537465 A T RP1 Silent p.I341I 0.19 TCGA-D3-A3MU-06 8 55542157 55542157 C T RP1 Silent p.D1905D 0.61 TCGA-D3-A3MU-06 8 67786587 67786587 C T MCMDC2 Nonsense_Mutation p.R41* 0.36 TCGA-D3-A3MU-06 8 69104697 69104697 C T PREX2 Missense_Mutation p.S1514F 0.53 deleterious(0) possibly_damaging(0.467) TCGA-D3-A3MU-06 8 87917361 87917361 C T CNBD1 Missense_Mutation p.P71S 0.64 tolerated(0.12) benign(0.245) TCGA-D3-A3MU-06 8 99169988 99169988 C T POP1 Missense_Mutation p.A855V 0.25 deleterious(0.02) benign(0.089) TCGA-D3-A3MU-06 9 108072074 108072074 G A SLC44A1 Missense_Mutation p.G66R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 9 113220765 113220765 C T SVEP1 Missense_Mutation p.E1188K 0.30 benign(0.002) TCGA-D3-A3MU-06 9 114484769 114484769 T A C9orf84 Missense_Mutation p.K620I 0.58 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A3MU-06 9 115760536 115760536 C T ZNF883 RNA 0.53 TCGA-D3-A3MU-06 9 117827034 117827034 G A TNC Missense_Mutation p.R1127W 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A3MU-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.46 TCGA-D3-A3MU-06 9 123631465 123631465 G C PHF19 Silent p.P203P 0.20 TCGA-D3-A3MU-06 9 35546459 35546459 C T RUSC2 5'UTR 0.32 TCGA-D3-A3MU-06 9 71851101 71851101 G T TJP2 Silent p.L677L 0.32 TCGA-D3-A3MU-06 9 8518099 8518099 G A PTPRD Missense_Mutation p.S431L 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A3MU-06 9 8518184 8518184 G A PTPRD Missense_Mutation p.P403S 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A3MU-06 X 101576786 101576786 G A NXF2 Missense_Mutation p.D428N 0.37 tolerated(1) benign(0.002) TCGA-D3-A3MU-06 X 101821541 101821541 G A NXF4 RNA 0.78 TCGA-D3-A3MU-06 X 105178250 105178250 G A NRK Missense_Mutation p.E1106K 0.77 tolerated(0.05) benign(0.167) TCGA-D3-A3MU-06 X 106082652 106082652 C T TBC1D8B Missense_Mutation p.H440Y 0.78 tolerated(0.07) benign(0.168) TCGA-D3-A3MU-06 X 132160053 132160053 G A USP26 Silent p.F732F 0.81 TCGA-D3-A3MU-06 X 140994505 140994505 C T MAGEC1 Missense_Mutation p.P439S 0.72 tolerated_low_confidence(0.38) benign(0) TCGA-D3-A3MU-06 X 142795380 142795380 C T SPANXN2 Missense_Mutation p.E100K 0.68 tolerated(0.07) unknown(0) TCGA-D3-A3MU-06 X 150889962 150889962 C T FATE1 Silent p.F110F 0.70 TCGA-D3-A3MU-06 X 150912014 150912014 G A CNGA2 Missense_Mutation p.D347N 0.79 tolerated(0.17) probably_damaging(1) TCGA-D3-A3MU-06 X 151303977 151303977 G A MAGEA10 Missense_Mutation p.S39L 0.65 tolerated(0.08) benign(0.06) TCGA-D3-A3MU-06 X 153008943 153008943 G T ABCD1 Missense_Mutation p.W664C 0.18 deleterious(0) probably_damaging(0.971) TCGA-D3-A3MU-06 X 3228536 3228536 G A MXRA5 Missense_Mutation p.P2570S 0.65 deleterious(0) possibly_damaging(0.833) TCGA-D3-A3MU-06 X 3248289 3248289 C T MXRA5 Missense_Mutation p.G160E 0.82 deleterious(0) probably_damaging(0.996) TCGA-D3-A3MU-06 X 47445102 47445102 C T TIMP1 Intron 0.83 TCGA-D3-A3MU-06 X 48631747 48631747 G A GLOD5 Missense_Mutation p.E127K 0.74 deleterious(0.01) probably_damaging(0.919) TCGA-D3-A3MU-06 X 49029590 49029590 C T PLP2 Silent p.L71L 0.79 TCGA-D3-A3MU-06 X 66941765 66941765 G A AR Silent p.Q803Q 0.84 TCGA-D3-A3MU-06 X 68749553 68749553 C T FAM155B Silent p.F391F 0.93 TCGA-D3-A3MU-06 X 70357440 70357440 C T MED12 Silent p.V1927V 0.18 TCGA-D3-A3MU-06 X 70511803 70511803 G A NONO Missense_Mutation p.G110E 0.71 deleterious(0) probably_damaging(0.911) TCGA-D3-A3MU-06 X 72434151 72434151 C T NAP1L2 Missense_Mutation p.E60K 0.89 tolerated(0.72) benign(0.016) TCGA-D3-A3MU-06 X 73744598 73744598 G C SLC16A2 Missense_Mutation p.G327A 0.75 tolerated(0.05) probably_damaging(1) TCGA-D3-A3MU-06 X 73963377 73963377 G A KIAA2022 Missense_Mutation p.P339S 0.87 deleterious(0) probably_damaging(1) TCGA-D3-A3MU-06 X 83129108 83129108 G A CYLC1 Silent p.G464G 0.80 TCGA-D3-A3MU-06 X 91456430 91456430 G A PCDH11X Silent p.E1030E 0.82 TCGA-D3-A3MV-06 10 101639994 101639994 G A DNMBP Silent p.F1374F 0.66 TCGA-D3-A3MV-06 10 102747269 102747269 C T MRPL43 5'UTR 0.40 TCGA-D3-A3MV-06 10 13325836 13325836 C T PHYH Missense_Mutation p.G228R 0.61 deleterious(0.03) possibly_damaging(0.694) TCGA-D3-A3MV-06 10 135195147 135195147 C T PAOX Silent p.I284I 0.68 TCGA-D3-A3MV-06 10 50531758 50531758 G A C10orf71 Missense_Mutation p.G390R 0.69 tolerated(0.21) benign(0.081) TCGA-D3-A3MV-06 10 61829606 61829606 G A ANK3 Missense_Mutation p.P3678L 0.81 benign(0.068) TCGA-D3-A3MV-06 10 61830238 61830238 G A ANK3 Silent p.I3467I 0.66 TCGA-D3-A3MV-06 10 61834248 61834248 C T ANK3 Missense_Mutation p.E2131K 0.56 probably_damaging(0.956) TCGA-D3-A3MV-06 10 7768995 7768995 G A ITIH2 Missense_Mutation p.R356Q 0.74 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A3MV-06 10 859098 859098 G A LARP4B Missense_Mutation p.P662L 0.77 deleterious(0) benign(0.14) TCGA-D3-A3MV-06 11 102738082 102738082 G A MMP12 RNA 0.77 TCGA-D3-A3MV-06 11 107920793 107920793 G A CUL5 Silent p.K137K 0.77 TCGA-D3-A3MV-06 11 1101046 1101046 G A MUC2 Missense_Mutation p.G2482E 0.70 unknown(0) TCGA-D3-A3MV-06 11 117869501 117869501 C T IL10RA Silent p.H294H 0.69 TCGA-D3-A3MV-06 11 118037512 118037512 G A SCN2B 3'UTR 0.78 TCGA-D3-A3MV-06 11 123753896 123753896 C T TMEM225 Silent p.V209V 0.53 TCGA-D3-A3MV-06 11 123886941 123886941 C T OR10G4 Silent p.I220I 0.75 TCGA-D3-A3MV-06 11 1274045 1274045 G A MUC5B Missense_Mutation p.E5018K 0.62 unknown(0) TCGA-D3-A3MV-06 11 17547943 17547943 C T USH1C Missense_Mutation p.E209K 0.55 deleterious(0.02) possibly_damaging(0.64) TCGA-D3-A3MV-06 11 20636271 20636271 G A SLC6A5 Silent p.S344S 0.62 TCGA-D3-A3MV-06 11 4661207 4661207 C T OR51D1 Missense_Mutation p.R63C 0.78 deleterious(0.04) possibly_damaging(0.577) TCGA-D3-A3MV-06 11 4661869 4661869 C T OR51D1 Silent p.L283L 0.62 TCGA-D3-A3MV-06 11 46685607 46685607 C T ATG13 Silent p.L284L 0.30 TCGA-D3-A3MV-06 11 4903486 4903486 C T OR51T1 Silent p.A146A 0.68 TCGA-D3-A3MV-06 11 56000318 56000318 A C OR5T2 Missense_Mutation p.V115G 0.61 deleterious(0) possibly_damaging(0.703) TCGA-D3-A3MV-06 11 60164131 60164131 C T MS4A14 Missense_Mutation p.P27L 0.84 deleterious(0) probably_damaging(0.971) TCGA-D3-A3MV-06 11 60231750 60231750 C T MS4A1 Intron 0.67 TCGA-D3-A3MV-06 11 61503050 61503050 C T DAGLA Silent p.F382F 0.84 TCGA-D3-A3MV-06 11 65363008 65363008 G A KCNK7 Missense_Mutation p.S79F 0.85 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MV-06 11 66458874 66458874 G A SPTBN2 Missense_Mutation p.R1816W 0.68 tolerated(0.07) benign(0.426) TCGA-D3-A3MV-06 11 6789911 6789911 G A OR2AG2 Missense_Mutation p.S93F 0.76 deleterious(0) probably_damaging(0.97) TCGA-D3-A3MV-06 11 7111075 7111075 G A RBMXL2 Missense_Mutation p.D242N 0.75 tolerated(0.1) possibly_damaging(0.555) TCGA-D3-A3MV-06 11 71146411 71146411 G A DHCR7 3'UTR 0.70 TCGA-D3-A3MV-06 11 71146412 71146412 G A DHCR7 3'UTR 0.69 TCGA-D3-A3MV-06 11 72004437 72004437 G C CLPB Missense_Mutation p.P700A 0.63 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-D3-A3MV-06 11 8008871 8008871 C T EIF3F 5'UTR 0.33 TCGA-D3-A3MV-06 11 8704299 8704299 C T RPL27A 5'UTR 0.73 TCGA-D3-A3MV-06 11 92085966 92085966 G A FAT3 Missense_Mutation p.E230K 0.34 probably_damaging(0.999) TCGA-D3-A3MV-06 12 109692078 109692078 A T ACACB Missense_Mutation p.E2035D 0.27 tolerated(0.69) benign(0.002) TCGA-D3-A3MV-06 12 109874332 109874332 G A MYO1H Missense_Mutation p.R711K 0.35 tolerated(0.48) benign(0.012) TCGA-D3-A3MV-06 12 111785825 111785825 C T CUX2 Missense_Mutation p.S1386F 0.25 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D3-A3MV-06 12 113357260 113357260 G A OAS1 Intron 0.30 TCGA-D3-A3MV-06 12 117768779 117768779 C T NOS1 Silent p.V32V 0.37 TCGA-D3-A3MV-06 12 117962701 117962701 G A KSR2 Silent p.F725F 0.32 TCGA-D3-A3MV-06 12 119957972 119957972 G A CCDC60 Missense_Mutation p.E339K 0.24 tolerated(0.37) benign(0.167) TCGA-D3-A3MV-06 12 123646767 123646767 T A MPHOSPH9 Splice_Site p.X858_splice 0.32 TCGA-D3-A3MV-06 12 124330279 124330279 G A DNAH10 Silent p.R1713R 0.35 TCGA-D3-A3MV-06 12 126138577 126138577 C T TMEM132B Missense_Mutation p.P853L 0.44 tolerated(0.27) possibly_damaging(0.678) TCGA-D3-A3MV-06 12 130184678 130184678 G A TMEM132D Silent p.S215S 0.24 TCGA-D3-A3MV-06 12 18435524 18435524 G A PIK3C2G Missense_Mutation p.G170E 0.25 tolerated_low_confidence(0.1) benign(0.025) TCGA-D3-A3MV-06 12 18854670 18854670 C T PLCZ1 Missense_Mutation p.G302E 0.46 tolerated(0.08) probably_damaging(0.988) TCGA-D3-A3MV-06 12 18891723 18891723 G A CAPZA3 Nonsense_Mutation p.W174* 0.26 TCGA-D3-A3MV-06 12 20786684 20786684 G A PDE3A Silent p.G606G 0.42 TCGA-D3-A3MV-06 12 21036398 21036398 G A SLCO1B3 Missense_Mutation p.R515K 0.45 tolerated(0.88) benign(0.004) TCGA-D3-A3MV-06 12 21457496 21457496 C T SLCO1A2 Missense_Mutation p.E152K 0.23 deleterious(0.05) benign(0.031) TCGA-D3-A3MV-06 12 28116248 28116248 C T PTHLH Intron 0.26 TCGA-D3-A3MV-06 12 32145533 32145533 C T KIAA1551 3'UTR 0.38 TCGA-D3-A3MV-06 12 41421717 41421717 C T CNTN1 Silent p.I923I 0.23 TCGA-D3-A3MV-06 12 43944829 43944829 C T ADAMTS20 Silent p.P112P 0.43 TCGA-D3-A3MV-06 12 45410054 45410054 G A DBX2 3'UTR 0.28 TCGA-D3-A3MV-06 12 47629014 47629014 C T PCED1B Silent p.F56F 0.31 TCGA-D3-A3MV-06 12 49717459 49717459 C T TROAP Missense_Mutation p.P23L 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 12 51634702 51634702 C T DAZAP2 Silent p.T60T 0.27 TCGA-D3-A3MV-06 12 52867474 52867474 C T KRT6C Silent p.R16R 0.18 TCGA-D3-A3MV-06 12 53207481 53207481 G A KRT4 Missense_Mutation p.P121L 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 12 53683351 53683351 C T ESPL1 Nonsense_Mutation p.Q1696* 0.44 TCGA-D3-A3MV-06 12 53823694 53823694 G A AMHR2 Missense_Mutation p.R407Q 0.44 tolerated(1) benign(0) TCGA-D3-A3MV-06 12 54734318 54734318 C T COPZ1 Intron 0.40 TCGA-D3-A3MV-06 12 54943752 54943752 G A PDE1B Nonsense_Mutation p.W32* 0.48 TCGA-D3-A3MV-06 12 55641256 55641256 G A OR6C74 Missense_Mutation p.R62Q 0.44 tolerated_low_confidence(0.17) benign(0.03) TCGA-D3-A3MV-06 12 55688524 55688524 C T OR6C6 Missense_Mutation p.D165N 0.44 deleterious_low_confidence(0.02) benign(0.062) TCGA-D3-A3MV-06 12 55725861 55725861 C T OR6C3 Missense_Mutation p.P126L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A3MV-06 12 55945169 55945169 C T OR6C4 Silent p.L53L 0.21 TCGA-D3-A3MV-06 12 56120749 56120749 C T CD63 Splice_Site p.X86_splice 0.55 TCGA-D3-A3MV-06 12 57007849 57007849 G A BAZ2A Silent p.V270V 0.26 TCGA-D3-A3MV-06 12 57011238 57011238 G A BAZ2A Missense_Mutation p.S28F 0.35 deleterious(0) probably_damaging(0.982) TCGA-D3-A3MV-06 12 60173516 60173516 C T SLC16A7 3'UTR 0.71 TCGA-D3-A3MV-06 12 64174929 64174929 A T TMEM5 Silent p.V100V 0.43 TCGA-D3-A3MV-06 12 6665123 6665123 C T IFFO1 Missense_Mutation p.D25N 0.50 tolerated_low_confidence(0.08) benign(0.087) TCGA-D3-A3MV-06 12 70953112 70953113 AC T PTPRB Intron 0.29 TCGA-D3-A3MV-06 12 7289520 7289520 C T CLSTN3 Silent p.L342L 0.46 TCGA-D3-A3MV-06 12 7639227 7639227 C T CD163 Missense_Mutation p.E776K 0.04 tolerated(0.09) probably_damaging(0.973) TCGA-D3-A3MV-06 12 8245546 8245546 C T NECAP1 Missense_Mutation p.P191S 0.45 deleterious(0.03) probably_damaging(0.927) TCGA-D3-A3MV-06 12 88452716 88452716 C T CEP290 Missense_Mutation p.E2243K 0.20 possibly_damaging(0.542) TCGA-D3-A3MV-06 12 91449844 91449844 C T KERA Missense_Mutation p.R72K 0.28 deleterious(0.02) possibly_damaging(0.826) TCGA-D3-A3MV-06 12 9262479 9262479 G A A2M Silent p.F219F 0.45 TCGA-D3-A3MV-06 12 994397 994397 C T WNK1 Missense_Mutation p.S1476F 0.35 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-D3-A3MV-06 12 99793546 99793546 C T ANKS1B Missense_Mutation p.R540Q 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.716) TCGA-D3-A3MV-06 13 102379096 102379096 G A FGF14 Missense_Mutation p.S163L 0.54 deleterious(0) probably_damaging(0.985) TCGA-D3-A3MV-06 13 103710711 103710711 G A SLC10A2 Silent p.S133S 0.65 TCGA-D3-A3MV-06 13 111371712 111371712 C T ING1 Silent p.I234I 0.53 TCGA-D3-A3MV-06 13 19752419 19752419 G A TUBA3C Silent p.I114I 0.11 TCGA-D3-A3MV-06 13 32376374 32376374 G A RXFP2 Silent p.K699K 0.53 TCGA-D3-A3MV-06 13 77718653 77718653 A G MYCBP2 Silent p.T2372T 0.04 TCGA-D3-A3MV-06 13 86368801 86368801 G A SLITRK6 Silent p.L615L 0.64 TCGA-D3-A3MV-06 13 96239829 96239829 C T DZIP1 Missense_Mutation p.E728K 0.74 tolerated(0.12) benign(0.011) TCGA-D3-A3MV-06 13 96665626 96665626 G A UGGT2 Missense_Mutation p.H199Y 0.71 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A3MV-06 14 100795125 100795125 G A SLC25A47 Silent p.Q130Q 0.79 TCGA-D3-A3MV-06 14 101423536 101423536 C T SNORD114-6 RNA 0.26 TCGA-D3-A3MV-06 14 106174820 106174820 C T IGHA1 Silent p.G61G 0.51 TCGA-D3-A3MV-06 14 106236039 106236039 T A IGHG3 Nonsense_Mutation p.K256* 0.67 TCGA-D3-A3MV-06 14 106311833 106311833 C A IGHD Missense_Mutation p.R60L 0.43 tolerated(0.27) benign(0) TCGA-D3-A3MV-06 14 106478136 106478136 C T IGHV4-4 Missense_Mutation p.D108N 0.09 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D3-A3MV-06 14 106963025 106963025 C T IGHV1-45 Missense_Mutation p.R86K 0.62 tolerated(0.52) benign(0.042) TCGA-D3-A3MV-06 14 19378555 19378555 G A OR11H12 Missense_Mutation p.G321E 0.66 tolerated(0.12) benign(0.033) TCGA-D3-A3MV-06 14 19553834 19553834 C T POTEG Silent p.L140L 0.19 TCGA-D3-A3MV-06 14 20502084 20502084 G A OR4K13 Silent p.F278F 0.89 TCGA-D3-A3MV-06 14 21883941 21883941 G A CHD8 Silent p.L614L 0.63 TCGA-D3-A3MV-06 14 24885224 24885224 C T NYNRIN Silent p.S1423S 0.65 TCGA-D3-A3MV-06 14 25076890 25076890 G A GZMH Silent p.I89I 0.72 TCGA-D3-A3MV-06 14 56755318 56755318 C T PELI2 Missense_Mutation p.A158V 0.70 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A3MV-06 14 62261709 62261709 G A SNAPC1 3'UTR 0.71 TCGA-D3-A3MV-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.72 TCGA-D3-A3MV-06 14 95574384 95574384 G A DICER1 Missense_Mutation p.S828F 0.74 deleterious(0) probably_damaging(0.965) TCGA-D3-A3MV-06 14 95932475 95932475 G A SYNE3 Silent p.I140I 0.64 TCGA-D3-A3MV-06 15 100537692 100537692 G A ADAMTS17 Silent p.V898V 0.37 TCGA-D3-A3MV-06 15 22472946 22472946 C T IGHV4OR15-8 Missense_Mutation p.D109N 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MV-06 15 24922455 24922455 G A NPAP1 Missense_Mutation p.G481R 0.21 tolerated(0.05) probably_damaging(0.93) TCGA-D3-A3MV-06 15 25496072 25496072 G A SNORD115-44 RNA 0.25 TCGA-D3-A3MV-06 15 28475566 28475566 G A HERC2 Missense_Mutation p.P1586S 0.41 benign(0.004) TCGA-D3-A3MV-06 15 30009029 30009029 G A TJP1 Nonsense_Mutation p.Q1330* 0.57 TCGA-D3-A3MV-06 15 33954484 33954484 G A RYR3 Missense_Mutation p.D1585N 0.58 probably_damaging(0.968) TCGA-D3-A3MV-06 15 34551109 34551109 G A SLC12A6 Missense_Mutation p.L150F 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3MV-06 15 34656416 34656416 G A LPCAT4 Silent p.T190T 0.42 TCGA-D3-A3MV-06 15 35176814 35176814 G A AQR Missense_Mutation p.P980L 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-D3-A3MV-06 15 40580978 40580978 G A PLCB2 Missense_Mutation p.P1166S 0.29 tolerated_low_confidence(0.73) benign(0) TCGA-D3-A3MV-06 15 41146659 41146659 C T SPINT1 Silent p.F351F 0.52 TCGA-D3-A3MV-06 15 42034889 42034889 C T MGA Silent p.V1577V 0.55 TCGA-D3-A3MV-06 15 45398521 45398521 C T DUOX2 Missense_Mutation p.M650I 0.26 tolerated(0.21) benign(0.164) TCGA-D3-A3MV-06 15 50152492 50152492 C T ATP8B4 Missense_Mutation p.E1160K 0.47 tolerated(0.64) benign(0.223) TCGA-D3-A3MV-06 15 50899415 50899415 G A TRPM7 Silent p.A897A 0.42 TCGA-D3-A3MV-06 15 56993114 56993115 GT A ZNF280D Intron 0.23 TCGA-D3-A3MV-06 15 57730212 57730212 C T CGNL1 Silent p.F5F 0.46 TCGA-D3-A3MV-06 15 63901249 63901249 G A HERC1 3'UTR 0.50 TCGA-D3-A3MV-06 15 66727441 66727441 T A MAP2K1 Missense_Mutation p.F53I 0.30 deleterious(0) probably_damaging(0.964) TCGA-D3-A3MV-06 15 69732339 69732339 T C KIF23 Missense_Mutation p.F604L 0.21 tolerated(1) benign(0) TCGA-D3-A3MV-06 15 71447238 71447238 C T THSD4 Silent p.F22F 0.48 TCGA-D3-A3MV-06 15 78819789 78819789 C T HYKK Missense_Mutation p.P182L 0.44 deleterious(0.02) possibly_damaging(0.737) TCGA-D3-A3MV-06 15 78909424 78909424 C T CHRNA3 Missense_Mutation p.E107K 0.20 tolerated(0.44) possibly_damaging(0.734) TCGA-D3-A3MV-06 15 89392754 89392754 C T ACAN Silent p.A606A 0.55 TCGA-D3-A3MV-06 15 90119080 90119080 C T TICRR Missense_Mutation p.A88V 0.53 tolerated(0.06) benign(0.326) TCGA-D3-A3MV-06 15 90768390 90768390 A T SEMA4B Missense_Mutation p.D462V 0.70 tolerated(0.22) probably_damaging(0.929) TCGA-D3-A3MV-06 16 14014015 14014015 G A ERCC4 5'UTR 0.67 TCGA-D3-A3MV-06 16 1536507 1536507 G A PTX4 Silent p.F285F 0.72 TCGA-D3-A3MV-06 16 20043681 20043681 C T GPR139 Silent p.R146R 0.69 TCGA-D3-A3MV-06 16 20043682 20043682 C T GPR139 Missense_Mutation p.R146Q 0.68 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A3MV-06 16 2049609 2049609 G A ZNF598 Silent p.P647P 0.76 TCGA-D3-A3MV-06 16 22926890 22926890 G A HS3ST2 3'UTR 0.06 TCGA-D3-A3MV-06 16 28631441 28631441 G A SULT1A1 5'UTR 0.46 TCGA-D3-A3MV-06 16 3065827 3065827 C T CLDN6 Missense_Mutation p.V66M 0.75 tolerated(0.05) probably_damaging(1) TCGA-D3-A3MV-06 16 30748990 30748990 C T SRCAP Silent p.L2543L 0.08 TCGA-D3-A3MV-06 16 31477519 31477519 C T ARMC5 Missense_Mutation p.S706F 0.50 tolerated(0.1) benign(0.045) TCGA-D3-A3MV-06 16 47292640 47292640 G A ITFG1 Silent p.D411D 0.57 TCGA-D3-A3MV-06 16 57017643 57017643 C T CETP 3'UTR 0.83 TCGA-D3-A3MV-06 16 61687817 61687817 C T CDH8 Missense_Mutation p.D699N 0.65 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A3MV-06 16 65038668 65038668 G A CDH11 Silent p.F35F 0.67 TCGA-D3-A3MV-06 16 66956131 66956131 C T RRAD Missense_Mutation p.E259K 0.81 deleterious(0.04) probably_damaging(0.987) TCGA-D3-A3MV-06 16 68597632 68597632 C T ZFP90 Silent p.L314L 0.72 TCGA-D3-A3MV-06 16 70989293 70989293 C T HYDIN Missense_Mutation p.E2101K 0.13 probably_damaging(0.953) TCGA-D3-A3MV-06 16 74530429 74530429 G A GLG1 Silent p.L296L 0.56 TCGA-D3-A3MV-06 16 83636115 83636115 G A CDH13 Silent p.L386L 0.05 TCGA-D3-A3MV-06 16 9934839 9934839 T A GRIN2A Missense_Mutation p.K484M 0.64 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 17 10317277 10317277 C T MYH8 Silent p.G363G 0.51 TCGA-D3-A3MV-06 17 10429959 10429959 C T MYH2 Missense_Mutation p.E1382K 0.49 deleterious(0) benign(0.323) TCGA-D3-A3MV-06 17 10438617 10438617 G A MYH2 Silent p.I680I 0.18 TCGA-D3-A3MV-06 17 10442632 10442632 C T MYH2 Missense_Mutation p.E436K 0.21 deleterious(0) possibly_damaging(0.693) TCGA-D3-A3MV-06 17 10448697 10448697 G A MYH2 Silent p.S157S 0.16 TCGA-D3-A3MV-06 17 12812271 12812271 G A ARHGAP44 Missense_Mutation p.G86R 0.24 deleterious(0.01) possibly_damaging(0.837) TCGA-D3-A3MV-06 17 12862070 12862070 C T ARHGAP44 Missense_Mutation p.P460L 0.13 deleterious(0.01) benign(0.235) TCGA-D3-A3MV-06 17 15519013 15519013 G A RP11-385D13.1 Missense_Mutation p.P516S 0.50 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-D3-A3MV-06 17 16612813 16612813 C T CCDC144A Missense_Mutation p.P481L 0.50 tolerated(0.09) benign(0) TCGA-D3-A3MV-06 17 16691296 16691296 C T CCDC144A 3'UTR 0.32 TCGA-D3-A3MV-06 17 17700963 17700963 C T RAI1 Silent p.P1567P 0.20 TCGA-D3-A3MV-06 17 18010592 18010592 C T DRG2 3'UTR 0.40 TCGA-D3-A3MV-06 17 18183895 18183895 C T TOP3A Missense_Mutation p.R700K 0.17 tolerated(1) benign(0.005) TCGA-D3-A3MV-06 17 20239222 20239222 C T RN7SL17P 5'Flank 0.49 TCGA-D3-A3MV-06 17 21319632 21319632 C T KCNJ12 Silent p.R326R 0.07 TCGA-D3-A3MV-06 17 25936329 25936329 G A KSR1 Silent p.G618G 0.48 TCGA-D3-A3MV-06 17 26857782 26857782 G A FOXN1 Missense_Mutation p.M282I 0.29 deleterious(0) probably_damaging(0.949) TCGA-D3-A3MV-06 17 31324751 31324751 C T SPACA3 Silent p.C201C 0.18 TCGA-D3-A3MV-06 17 3195151 3195151 G A OR3A1 Silent p.S242S 0.39 TCGA-D3-A3MV-06 17 3301698 3301698 C T OR1E1 Missense_Mutation p.G3R 0.37 tolerated(0.86) benign(0.002) TCGA-D3-A3MV-06 17 33771893 33771893 C T SLFN13 Silent p.L269L 0.53 TCGA-D3-A3MV-06 17 34236529 34236529 G A AC015849.16 RNA 0.19 TCGA-D3-A3MV-06 17 35536293 35536293 G A ACACA Missense_Mutation p.P1663S 0.46 tolerated(0.4) benign(0.034) TCGA-D3-A3MV-06 17 35562785 35562785 A G ACACA Missense_Mutation p.V1317A 0.20 tolerated(0.78) benign(0.001) TCGA-D3-A3MV-06 17 37864760 37864760 C T ERBB2 Missense_Mutation p.R138W 0.35 deleterious(0) probably_damaging(0.945) TCGA-D3-A3MV-06 17 38640799 38640799 G A TNS4 Nonsense_Mutation p.R480* 0.35 TCGA-D3-A3MV-06 17 40315707 40315707 G A KCNH4 Silent p.P798P 0.68 TCGA-D3-A3MV-06 17 40375412 40375412 G A STAT5B Silent p.L180L 0.16 TCGA-D3-A3MV-06 17 41244176 41244176 G A BRCA1 Silent p.F1124F 0.55 TCGA-D3-A3MV-06 17 41958903 41958903 A C MPP2 Missense_Mutation p.C246G 0.26 deleterious(0) probably_damaging(0.993) TCGA-D3-A3MV-06 17 43196224 43196224 G A PLCD3 Missense_Mutation p.R291C 0.44 tolerated(0.18) benign(0.005) TCGA-D3-A3MV-06 17 43196225 43196225 G A PLCD3 Silent p.A290A 0.42 TCGA-D3-A3MV-06 17 4442750 4442750 G A MYBBP1A Missense_Mutation p.A1316V 0.53 tolerated_low_confidence(0.09) benign(0.031) TCGA-D3-A3MV-06 17 47219493 47219493 G A B4GALNT2 Silent p.V164V 0.20 TCGA-D3-A3MV-06 17 4788861 4788861 G A MINK1 Missense_Mutation p.E198K 0.28 deleterious(0) possibly_damaging(0.837) TCGA-D3-A3MV-06 17 48557289 48557289 C T RSAD1 Silent p.P106P 0.21 TCGA-D3-A3MV-06 17 48649268 48649268 G A CACNA1G Missense_Mutation p.D206N 0.28 deleterious(0) probably_damaging(0.947) TCGA-D3-A3MV-06 17 5058737 5058737 C T USP6 Silent p.F888F 0.24 TCGA-D3-A3MV-06 17 53237185 53237185 C T STXBP4 Silent p.I525I 0.24 TCGA-D3-A3MV-06 17 55182818 55182818 C T AKAP1 5'UTR 0.48 TCGA-D3-A3MV-06 17 55182819 55182819 C T AKAP1 5'UTR 0.49 TCGA-D3-A3MV-06 17 55926750 55926750 G A MRPS23 Silent p.A22A 0.25 TCGA-D3-A3MV-06 17 55926751 55926751 G A MRPS23 Missense_Mutation p.A22V 0.25 tolerated(0.07) benign(0.098) TCGA-D3-A3MV-06 17 56352921 56352921 G A MPO Silent p.I449I 0.31 TCGA-D3-A3MV-06 17 57287389 57287389 G A SMG8 5'UTR 0.60 TCGA-D3-A3MV-06 17 57287390 57287390 G A SMG8 5'UTR 0.55 TCGA-D3-A3MV-06 17 61499137 61499137 G A TANC2 Missense_Mutation p.G1932R 0.14 tolerated_low_confidence(0.27) benign(0.007) TCGA-D3-A3MV-06 17 62081230 62081230 G A ICAM2 Silent p.P141P 0.58 TCGA-D3-A3MV-06 17 6428673 6428673 C T PITPNM3 Intron 0.54 TCGA-D3-A3MV-06 17 67129868 67129868 T C ABCA6 Silent p.V235V 0.32 TCGA-D3-A3MV-06 17 7227009 7227009 G A NEURL4 Silent p.V765V 0.65 TCGA-D3-A3MV-06 17 7417412 7417412 T C POLR2A Silent p.T1943T 0.47 TCGA-D3-A3MV-06 17 7417414 7417414 C T POLR2A Missense_Mutation p.S1944F 0.45 unknown(0) TCGA-D3-A3MV-06 17 7535056 7535056 C T SHBG Silent p.F235F 0.52 TCGA-D3-A3MV-06 17 76083070 76083070 C T TNRC6C Missense_Mutation p.S1230L 0.22 deleterious(0.01) benign(0.207) TCGA-D3-A3MV-06 17 76116715 76116715 C T TMC6 Intron 0.16 TCGA-D3-A3MV-06 17 76503747 76503747 C T DNAH17 Silent p.L1455L 0.19 TCGA-D3-A3MV-06 17 76548870 76548870 C T DNAH17 Silent p.K732K 0.16 TCGA-D3-A3MV-06 17 76993389 76993389 G A CANT1 Nonsense_Mutation p.R106* 0.30 TCGA-D3-A3MV-06 17 79632478 79632478 G A OXLD1 Missense_Mutation p.S66F 0.11 tolerated(0.07) benign(0.011) TCGA-D3-A3MV-06 17 79876017 79876017 G A SIRT7 5'UTR 0.33 TCGA-D3-A3MV-06 18 10471849 10471849 C T APCDD1 Missense_Mutation p.L189F 0.32 deleterious(0.03) possibly_damaging(0.551) TCGA-D3-A3MV-06 18 28651784 28651784 G A DSC2 Nonsense_Mutation p.Q638* 0.41 TCGA-D3-A3MV-06 18 28712456 28712456 C T DSC1 Intron 0.43 TCGA-D3-A3MV-06 18 28728554 28728554 G A DSC1 Missense_Mutation p.P227S 0.32 tolerated(0.05) probably_damaging(0.917) TCGA-D3-A3MV-06 18 28926037 28926037 G A DSG1 Missense_Mutation p.G659E 0.35 deleterious(0.03) benign(0.143) TCGA-D3-A3MV-06 18 28968463 28968463 G A DSG4 Missense_Mutation p.R117K 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A3MV-06 18 3581882 3581882 G A DLGAP1 Silent p.I652I 0.35 TCGA-D3-A3MV-06 18 44030274 44030274 C T RNF165 Nonsense_Mutation p.R211* 0.33 TCGA-D3-A3MV-06 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.03 deleterious(0.03) probably_damaging(0.971) TCGA-D3-A3MV-06 18 44635148 44635148 G A HDHD2 Nonsense_Mutation p.R229* 0.40 TCGA-D3-A3MV-06 18 51013265 51013265 C T DCC Missense_Mutation p.L1279F 0.40 tolerated(0.53) benign(0.102) TCGA-D3-A3MV-06 18 52265112 52265112 G A DYNAP Silent p.V123V 0.37 TCGA-D3-A3MV-06 18 53128337 53128337 C T TCF4 Missense_Mutation p.D175N 0.37 tolerated(0.05) benign(0.093) TCGA-D3-A3MV-06 18 55024677 55024677 G A ST8SIA3 Missense_Mutation p.G279E 0.42 probably_damaging(1) TCGA-D3-A3MV-06 18 56203089 56203089 C T ALPK2 Missense_Mutation p.E1444K 0.33 tolerated(0.4) benign(0) TCGA-D3-A3MV-06 18 57107031 57107031 C G CCBE1 Missense_Mutation p.G265R 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 18 60242640 60242640 C T ZCCHC2 Missense_Mutation p.P1109L 0.41 deleterious(0.02) probably_damaging(0.991) TCGA-D3-A3MV-06 18 61310800 61310800 G A SERPINB4 Silent p.L4L 0.37 TCGA-D3-A3MV-06 18 6966156 6966156 G A LAMA1 Missense_Mutation p.S2347L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 18 8406215 8406215 C T PTPRM 3'UTR 0.37 TCGA-D3-A3MV-06 19 11569051 11569051 C T ELAVL3 Missense_Mutation p.E180K 0.11 deleterious(0) probably_damaging(0.96) TCGA-D3-A3MV-06 19 16791364 16791364 C T TMEM38A Silent p.F146F 0.51 TCGA-D3-A3MV-06 19 17068694 17068694 C T CPAMD8 Missense_Mutation p.E796K 0.55 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 19 17780454 17780454 G A UNC13A Missense_Mutation p.S101F 0.21 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D3-A3MV-06 19 19120938 19120938 G A SUGP2 Silent p.L688L 0.56 TCGA-D3-A3MV-06 19 19120956 19120956 G A SUGP2 Silent p.L682L 0.14 TCGA-D3-A3MV-06 19 19414741 19414741 A T SUGP1 Intron 0.14 TCGA-D3-A3MV-06 19 19414819 19414819 G A SUGP1 Intron 0.57 TCGA-D3-A3MV-06 19 1986899 1986899 A C BTBD2 Missense_Mutation p.F449C 0.09 tolerated(0.06) possibly_damaging(0.833) TCGA-D3-A3MV-06 19 21300028 21300028 C T ZNF714 Silent p.T186T 0.40 TCGA-D3-A3MV-06 19 35434914 35434914 A T ZNF30 Missense_Mutation p.E349D 0.11 tolerated(0.12) possibly_damaging(0.863) TCGA-D3-A3MV-06 19 36364607 36364607 C T APLP1 Silent p.L350L 0.43 TCGA-D3-A3MV-06 19 37399336 37399336 G A ZNF829 Missense_Mutation p.S122F 0.57 deleterious(0) probably_damaging(0.983) TCGA-D3-A3MV-06 19 37879562 37879562 C T ZNF527 Missense_Mutation p.S204L 0.19 tolerated(0.17) benign(0.051) TCGA-D3-A3MV-06 19 39207754 39207754 C T ACTN4 Missense_Mutation p.P314L 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MV-06 19 39914450 39914450 C T PLEKHG2 Silent p.L893L 0.63 TCGA-D3-A3MV-06 19 41007858 41007858 C T SPTBN4 Missense_Mutation p.S272F 0.14 deleterious(0) probably_damaging(0.967) TCGA-D3-A3MV-06 19 41113412 41113412 A T LTBP4 Missense_Mutation p.Q445L 0.74 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A3MV-06 19 42507571 42507571 G A GRIK5 Silent p.I809I 0.13 TCGA-D3-A3MV-06 19 42626663 42626663 C T POU2F2 Missense_Mutation p.D32N 0.51 tolerated(0.06) benign(0.233) TCGA-D3-A3MV-06 19 4311969 4311969 C T FSD1 Silent p.F207F 0.60 TCGA-D3-A3MV-06 19 43242944 43242944 G A PSG3 Missense_Mutation p.T121I 0.57 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A3MV-06 19 43428920 43428920 G A PSG7 3'UTR 0.09 TCGA-D3-A3MV-06 19 43683229 43683229 G A PSG5 Intron 0.18 TCGA-D3-A3MV-06 19 43859894 43859894 G A CD177 3'UTR 0.42 TCGA-D3-A3MV-06 19 43866411 43866411 G A CD177 3'UTR 0.60 TCGA-D3-A3MV-06 19 43866412 43866412 G T CD177 3'UTR 0.56 TCGA-D3-A3MV-06 19 4891357 4891357 G A ARRDC5 Missense_Mutation p.R244W 0.37 tolerated(0.18) probably_damaging(0.98) TCGA-D3-A3MV-06 19 49102445 49102445 G A SULT2B1 Missense_Mutation p.D294N 0.69 tolerated(0.1) benign(0.374) TCGA-D3-A3MV-06 19 49206638 49206638 G A FUT2 Missense_Mutation p.G142E 0.14 tolerated(0.23) possibly_damaging(0.903) TCGA-D3-A3MV-06 19 4954832 4954832 C T UHRF1 Intron 0.23 TCGA-D3-A3MV-06 19 50118189 50118189 C T PRR12 Silent p.F1649F 0.58 TCGA-D3-A3MV-06 19 50169132 50169132 C T BCL2L12 Missense_Mutation p.R18W 0.13 tolerated_low_confidence(0.07) benign(0.003) TCGA-D3-A3MV-06 19 50823849 50823849 C T KCNC3 Splice_Site p.X724_splice 0.59 TCGA-D3-A3MV-06 19 52115405 52115405 C T SIGLEC5 3'UTR 0.60 TCGA-D3-A3MV-06 19 53384634 53384634 C G ZNF320 Missense_Mutation p.E249Q 0.45 deleterious(0.03) benign(0.35) TCGA-D3-A3MV-06 19 55098871 55098871 G A LILRA2 3'UTR 0.43 TCGA-D3-A3MV-06 19 55316267 55316267 C T KIR2DL4 Silent p.F32F 0.27 TCGA-D3-A3MV-06 19 55451490 55451490 C T NLRP7 Missense_Mutation p.E233K 0.55 tolerated(0.08) benign(0.444) TCGA-D3-A3MV-06 19 56373457 56373457 C T NLRP4 Silent p.L706L 0.61 TCGA-D3-A3MV-06 19 56515139 56515139 C T NLRP5 Silent p.F40F 0.15 TCGA-D3-A3MV-06 19 5667859 5667859 C A SAFB Silent p.S862S 0.15 TCGA-D3-A3MV-06 19 8606866 8606866 C T MYO1F Missense_Mutation p.D512N 0.16 tolerated(0.3) benign(0.004) TCGA-D3-A3MV-06 19 9057066 9057066 G A MUC16 Missense_Mutation p.S10127F 0.16 benign(0.016) TCGA-D3-A3MV-06 19 9064403 9064403 C T MUC16 Silent p.V7681V 0.19 TCGA-D3-A3MV-06 19 9082794 9082794 G A MUC16 Silent p.T3007T 0.10 TCGA-D3-A3MV-06 19 9084492 9084492 G A MUC16 Silent p.S2441S 0.17 TCGA-D3-A3MV-06 19 9085237 9085237 G A MUC16 Missense_Mutation p.S2193F 0.12 unknown(0) TCGA-D3-A3MV-06 19 9086687 9086687 C T MUC16 Missense_Mutation p.E1710K 0.67 unknown(0) TCGA-D3-A3MV-06 19 9089550 9089550 C T MUC16 Silent p.G755G 0.55 TCGA-D3-A3MV-06 19 9225778 9225778 A G OR7G1 Missense_Mutation p.I221T 0.57 deleterious(0.01) possibly_damaging(0.635) TCGA-D3-A3MV-06 19 9578939 9578939 G A ZNF560 Silent p.C228C 0.20 TCGA-D3-A3MV-06 1 104163193 104163193 G A AMY2A Silent p.E255E 0.18 TCGA-D3-A3MV-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.70 tolerated(0.06) benign(0.006) TCGA-D3-A3MV-06 1 118598459 118598459 C T SPAG17 Missense_Mutation p.M873I 0.72 deleterious(0.02) benign(0.099) TCGA-D3-A3MV-06 1 11884570 11884570 T C CLCN6 Missense_Mutation p.M203T 0.46 deleterious(0) probably_damaging(0.978) TCGA-D3-A3MV-06 1 1262675 1262675 C T GLTPD1 Silent p.S59S 0.75 TCGA-D3-A3MV-06 1 12837292 12837292 C T PRAMEF12 Silent p.F334F 0.87 TCGA-D3-A3MV-06 1 150129151 150129151 C T PLEKHO1 Missense_Mutation p.S122L 0.76 tolerated(0.05) benign(0.034) TCGA-D3-A3MV-06 1 150971967 150971967 G A FAM63A Silent p.L335L 0.81 TCGA-D3-A3MV-06 1 152057342 152057342 G A TCHHL1 3'UTR 0.71 TCGA-D3-A3MV-06 1 152059343 152059343 G A TCHHL1 Missense_Mutation p.P272L 0.78 tolerated(0.06) benign(0.405) TCGA-D3-A3MV-06 1 152732493 152732493 T C KPRP Silent p.T143T 0.79 TCGA-D3-A3MV-06 1 153906074 153906074 G T DENND4B Missense_Mutation p.P1072H 0.80 tolerated(0.08) benign(0.425) TCGA-D3-A3MV-06 1 154229841 154229841 C T UBAP2L Silent p.L791L 0.69 TCGA-D3-A3MV-06 1 156639850 156639850 G A NES Missense_Mutation p.P1377L 0.77 deleterious(0) benign(0) TCGA-D3-A3MV-06 1 156639851 156639851 G A NES Missense_Mutation p.P1377S 0.75 tolerated(1) benign(0) TCGA-D3-A3MV-06 1 156819156 156819156 G A INSRR Silent p.F442F 0.78 TCGA-D3-A3MV-06 1 158368942 158368942 G A OR10T2 Silent p.F105F 0.74 TCGA-D3-A3MV-06 1 159409937 159409937 G A OR10J1 Missense_Mutation p.G130E 0.74 deleterious(0) probably_damaging(0.982) TCGA-D3-A3MV-06 1 159785549 159785549 C T FCRL6 3'Flank 0.78 TCGA-D3-A3MV-06 1 161130686 161130686 C T USP21 Missense_Mutation p.H86Y 0.78 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-D3-A3MV-06 1 171890926 171890926 G A DNM3 Missense_Mutation p.R67Q 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 1 177247853 177247853 C T BRINP2 Silent p.I389I 0.83 TCGA-D3-A3MV-06 1 179460829 179460829 G A AXDND1 Missense_Mutation p.E750K 0.74 tolerated(0.54) benign(0.014) TCGA-D3-A3MV-06 1 181740455 181740455 G A CACNA1E Silent p.E1636E 0.75 TCGA-D3-A3MV-06 1 18809753 18809753 C A KLHDC7A Missense_Mutation p.L760I 0.24 deleterious(0) unknown(0) TCGA-D3-A3MV-06 1 18961677 18961677 G A PAX7 Missense_Mutation p.E132K 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A3MV-06 1 197128925 197128925 G A ZBTB41 Missense_Mutation p.S765F 0.77 deleterious(0.01) benign(0.366) TCGA-D3-A3MV-06 1 200376691 200376691 G A ZNF281 Missense_Mutation p.P715S 0.85 tolerated(0.06) probably_damaging(0.996) TCGA-D3-A3MV-06 1 202932811 202932811 G A CYB5R1 Missense_Mutation p.P202S 0.59 tolerated(0.12) possibly_damaging(0.639) TCGA-D3-A3MV-06 1 203040888 203040888 C G PPFIA4 Missense_Mutation p.D625E 0.69 tolerated(1) benign(0.003) TCGA-D3-A3MV-06 1 205041148 205041148 C T CNTN2 Missense_Mutation p.A873V 0.78 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MV-06 1 205290787 205290787 G A NUAK2 5'UTR 0.85 TCGA-D3-A3MV-06 1 20992747 20992747 C T KIF17 Silent p.R957R 0.75 TCGA-D3-A3MV-06 1 210857382 210857382 G A KCNH1 Silent p.V737V 0.78 TCGA-D3-A3MV-06 1 216166467 216166467 C T USH2A Missense_Mutation p.A2234T 0.84 benign(0.12) TCGA-D3-A3MV-06 1 217665071 217665071 G A GPATCH2 Nonsense_Mutation p.R410* 0.68 TCGA-D3-A3MV-06 1 223283825 223283825 G A TLR5 Missense_Mutation p.P850L 0.67 tolerated(0.19) benign(0.018) TCGA-D3-A3MV-06 1 231044697 231044697 G A TTC13 Silent p.P793P 0.83 TCGA-D3-A3MV-06 1 233807084 233807084 G A KCNK1 Silent p.L273L 0.77 TCGA-D3-A3MV-06 1 237875104 237875104 C T RYR2 Silent p.F3430F 0.81 TCGA-D3-A3MV-06 1 248004539 248004539 G A OR11L1 Silent p.F220F 0.77 TCGA-D3-A3MV-06 1 248004808 248004808 G A OR11L1 Missense_Mutation p.R131C 0.87 deleterious(0) benign(0.409) TCGA-D3-A3MV-06 1 248616599 248616599 C T OR2T2 Silent p.F167F 0.27 TCGA-D3-A3MV-06 1 27706479 27706479 G A CD164L2 3'UTR 0.65 TCGA-D3-A3MV-06 1 34330332 34330332 G A HMGB4 Silent p.G180G 0.40 TCGA-D3-A3MV-06 1 36932012 36932012 G A CSF3R Silent p.F846F 0.59 TCGA-D3-A3MV-06 1 40432817 40432817 C T MFSD2A Silent p.F342F 0.69 TCGA-D3-A3MV-06 1 45797205 45797205 A G MUTYH Missense_Mutation p.F401L 0.81 deleterious(0.03) possibly_damaging(0.739) TCGA-D3-A3MV-06 1 47512182 47512182 G A CYP4X1 Missense_Mutation p.E373K 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 1 47533331 47533331 C T CYP4Z1 Missense_Mutation p.H57Y 0.73 deleterious(0.01) possibly_damaging(0.728) TCGA-D3-A3MV-06 1 57258315 57258315 G A C1orf168 Silent p.S57S 0.70 TCGA-D3-A3MV-06 1 57378172 57378172 G A C8A Missense_Mutation p.E493K 0.64 deleterious(0) possibly_damaging(0.721) TCGA-D3-A3MV-06 1 6273205 6273205 C T RNF207 Silent p.V538V 0.76 TCGA-D3-A3MV-06 1 68659877 68659877 G A WLS Missense_Mutation p.S45L 0.64 tolerated(0.09) benign(0.057) TCGA-D3-A3MV-06 1 75037994 75037994 C T C1orf173 Missense_Mutation p.A1134T 0.54 tolerated(0.15) benign(0.027) TCGA-D3-A3MV-06 1 79403674 79403674 T C ELTD1 Missense_Mutation p.E193G 0.76 tolerated(0.11) benign(0.403) TCGA-D3-A3MV-06 1 91180150 91180150 C T BARHL2 Missense_Mutation p.M263I 0.74 deleterious(0.05) unknown(0) TCGA-D3-A3MV-06 20 1552409 1552409 C T SIRPB1 Silent p.G236G 0.18 TCGA-D3-A3MV-06 20 18511378 18511378 C T SEC23B Silent p.F388F 0.60 TCGA-D3-A3MV-06 20 23065072 23065072 G A CD93 Silent p.I586I 0.52 TCGA-D3-A3MV-06 20 259840 259840 G A C20orf96 Silent p.A146A 0.17 TCGA-D3-A3MV-06 20 34802352 34802352 C T EPB41L1 Missense_Mutation p.S753L 0.28 tolerated(0.52) benign(0.001) TCGA-D3-A3MV-06 20 36932586 36932586 G A BPI 5'UTR 0.27 TCGA-D3-A3MV-06 20 3779059 3779059 G A CDC25B Missense_Mutation p.G110D 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 20 39990079 39990079 C T EMILIN3 Silent p.L710L 0.20 TCGA-D3-A3MV-06 20 41385114 41385114 G A PTPRT Silent p.L283L 0.51 TCGA-D3-A3MV-06 20 42682992 42682992 G A TOX2 Silent p.P235P 0.40 TCGA-D3-A3MV-06 20 43374695 43374695 C T KCNK15 Silent p.L48L 0.38 TCGA-D3-A3MV-06 20 43374696 43374696 C T KCNK15 Missense_Mutation p.R49W 0.38 deleterious(0.02) probably_damaging(0.986) TCGA-D3-A3MV-06 20 44187613 44187613 G A WFDC8 Missense_Mutation p.P52L 0.21 tolerated(0.14) probably_damaging(0.977) TCGA-D3-A3MV-06 20 47249085 47249085 G A PREX1 Missense_Mutation p.R1454C 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 20 47249086 47249086 G A PREX1 Silent p.S1453S 0.31 TCGA-D3-A3MV-06 20 56083820 56083820 G A CTCFL Missense_Mutation p.R506C 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-D3-A3MV-06 20 57876727 57876727 G A EDN3 Silent p.K105K 0.53 TCGA-D3-A3MV-06 20 60348129 60348129 C T CDH4 Missense_Mutation p.P156L 0.43 deleterious(0.03) benign(0.017) TCGA-D3-A3MV-06 20 62192810 62192810 G A HELZ2 Silent p.T2282T 0.25 TCGA-D3-A3MV-06 20 9525015 9525015 C T PAK7 Splice_Site p.X623_splice 0.51 TCGA-D3-A3MV-06 21 10916373 10916373 G A TPTE Missense_Mutation p.P425S 0.24 tolerated(0.2) benign(0.02) TCGA-D3-A3MV-06 21 11026793 11026793 C T BAGE2 RNA 0.11 TCGA-D3-A3MV-06 21 11039227 11039227 G A BAGE2 RNA 0.06 TCGA-D3-A3MV-06 21 11039340 11039340 C T BAGE2 RNA 0.10 TCGA-D3-A3MV-06 21 38302641 38302641 G A HLCS Silent p.V363V 0.28 TCGA-D3-A3MV-06 21 38302642 38302642 A T HLCS Missense_Mutation p.V363D 0.28 deleterious(0) probably_damaging(0.943) TCGA-D3-A3MV-06 21 41725649 41725649 G A DSCAM Missense_Mutation p.S226F 0.29 deleterious(0.04) possibly_damaging(0.652) TCGA-D3-A3MV-06 21 47548919 47548919 C T COL6A2 Intron 0.23 TCGA-D3-A3MV-06 21 9907319 9907319 G A TEKT4P2 RNA 0.31 TCGA-D3-A3MV-06 22 17288891 17288891 G A XKR3 Missense_Mutation p.L25F 0.39 tolerated(0.61) possibly_damaging(0.86) TCGA-D3-A3MV-06 22 18300933 18300933 G A MICAL3 Silent p.P1498P 0.33 TCGA-D3-A3MV-06 22 21363572 21363572 C T AC002472.1 5'Flank 0.35 TCGA-D3-A3MV-06 22 23040869 23040869 A C IGLV2-23 Missense_Mutation p.D106A 0.28 deleterious_low_confidence(0.01) benign(0.391) TCGA-D3-A3MV-06 22 23114853 23114853 G A IGLV3-12 Missense_Mutation p.G42E 0.19 tolerated(0.36) benign(0.042) TCGA-D3-A3MV-06 22 24085983 24085983 C G ZNF70 3'UTR 0.46 TCGA-D3-A3MV-06 22 26829832 26829832 G A ASPHD2 Missense_Mutation p.R84Q 0.37 tolerated_low_confidence(0.28) possibly_damaging(0.47) TCGA-D3-A3MV-06 22 29834697 29834697 C T RFPL1 5'UTR 0.44 TCGA-D3-A3MV-06 22 35660861 35660861 C T HMGXB4 Silent p.P160P 0.40 TCGA-D3-A3MV-06 22 37319396 37319396 C T CSF2RB Missense_Mutation p.R63C 0.30 deleterious(0) probably_damaging(0.931) TCGA-D3-A3MV-06 22 38021006 38021006 C T GGA1 Missense_Mutation p.T288I 0.29 deleterious(0.03) probably_damaging(0.995) TCGA-D3-A3MV-06 22 38109300 38109300 C T TRIOBP Missense_Mutation p.P113L 0.44 tolerated_low_confidence(0.13) possibly_damaging(0.585) TCGA-D3-A3MV-06 22 38934315 38934315 G A DMC1 Nonsense_Mutation p.Q254* 0.37 TCGA-D3-A3MV-06 22 50757306 50757306 A G DENND6B Missense_Mutation p.C77R 0.51 deleterious(0) probably_damaging(0.976) TCGA-D3-A3MV-06 2 107002800 107002800 G A PLGLA RNA 0.24 TCGA-D3-A3MV-06 2 109384349 109384349 C T RANBP2 Missense_Mutation p.H2452Y 0.25 tolerated(0.15) benign(0.015) TCGA-D3-A3MV-06 2 11052970 11052970 G A KCNF1 Missense_Mutation p.E140K 0.43 deleterious(0.04) possibly_damaging(0.891) TCGA-D3-A3MV-06 2 111907670 111907670 C T BCL2L11 Silent p.I148I 0.58 TCGA-D3-A3MV-06 2 112722765 112722765 C T MERTK Intron 0.45 TCGA-D3-A3MV-06 2 113541312 113541312 C T IL1A Silent p.K12K 0.17 TCGA-D3-A3MV-06 2 113887221 113887221 G A IL1RN Missense_Mutation p.G65E 0.20 tolerated(0.08) benign(0.208) TCGA-D3-A3MV-06 2 132021858 132021858 G A POTEE Missense_Mutation p.D944N 0.07 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-D3-A3MV-06 2 138425365 138425365 T C THSD7B Missense_Mutation p.V1561A 0.88 deleterious(0) unknown(0) TCGA-D3-A3MV-06 2 140995831 140995831 C T LRP1B Missense_Mutation p.G4484R 0.25 probably_damaging(0.953) TCGA-D3-A3MV-06 2 141072531 141072531 C T LRP1B Missense_Mutation p.G4260R 0.20 probably_damaging(0.988) TCGA-D3-A3MV-06 2 141625352 141625352 G A LRP1B Silent p.I1462I 0.55 TCGA-D3-A3MV-06 2 153435417 153435417 G A FMNL2 Missense_Mutation p.V241I 0.44 possibly_damaging(0.755) TCGA-D3-A3MV-06 2 153475450 153475450 G A FMNL2 Missense_Mutation p.E469K 0.47 benign(0.444) TCGA-D3-A3MV-06 2 155099270 155099270 A T GALNT13 Missense_Mutation p.I180F 0.54 deleterious(0.04) benign(0.008) TCGA-D3-A3MV-06 2 155099272 155099272 T A GALNT13 Silent p.I180I 0.53 TCGA-D3-A3MV-06 2 158272620 158272620 C T CYTIP Missense_Mutation p.D217N 0.52 tolerated(0.2) benign(0.014) TCGA-D3-A3MV-06 2 160605239 160605239 C T MARCH7 Missense_Mutation p.P480S 0.24 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A3MV-06 2 163204218 163204218 C T GCA Missense_Mutation p.S53F 0.39 deleterious(0.01) possibly_damaging(0.601) TCGA-D3-A3MV-06 2 165984456 165984456 G A SCN3A Silent p.F1026F 0.47 TCGA-D3-A3MV-06 2 167298251 167298251 G A SCN7A Silent p.F604F 0.55 TCGA-D3-A3MV-06 2 167992518 167992518 G A XIRP2 Missense_Mutation p.E170K 0.24 benign(0.024) TCGA-D3-A3MV-06 2 172195817 172195846 ACCAGAACTTTTCTCATAATGATTTTTTTC - METTL8 In_Frame_Del p.E152_G161del 0.28 TCGA-D3-A3MV-06 2 172952987 172952987 G A DLX1 3'UTR 0.44 TCGA-D3-A3MV-06 2 173349578 173349578 C T ITGA6 Nonsense_Mutation p.R540* 0.15 TCGA-D3-A3MV-06 2 179441491 179441491 C T TTN Nonsense_Mutation p.W23160* 0.17 TCGA-D3-A3MV-06 2 179457996 179457996 C T TTN Missense_Mutation p.G19647R 0.38 TCGA-D3-A3MV-06 2 179547505 179547505 G A TTN Missense_Mutation p.P11005S 0.49 TCGA-D3-A3MV-06 2 179640313 179640313 G A TTN Missense_Mutation p.S2093F 0.37 TCGA-D3-A3MV-06 2 189875409 189875409 C T COL3A1 Silent p.V1349V 0.18 TCGA-D3-A3MV-06 2 189875410 189875410 C T COL3A1 Missense_Mutation p.L1350F 0.18 unknown(0) TCGA-D3-A3MV-06 2 190334870 190334870 C T WDR75 Nonsense_Mutation p.Q630* 0.31 TCGA-D3-A3MV-06 2 192711433 192711433 C T SDPR Silent p.Q73Q 0.29 TCGA-D3-A3MV-06 2 196753694 196753694 C T DNAH7 Silent p.R1686R 0.22 TCGA-D3-A3MV-06 2 197194325 197194325 C T HECW2 Missense_Mutation p.R182Q 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A3MV-06 2 203160481 203160481 C T NOP58 Missense_Mutation p.S331F 0.54 deleterious(0) possibly_damaging(0.808) TCGA-D3-A3MV-06 2 206911278 206911278 G A INO80D Silent p.P341P 0.50 TCGA-D3-A3MV-06 2 215855672 215855672 G A ABCA12 Silent p.I1126I 0.20 TCGA-D3-A3MV-06 2 220155547 220155547 C T PTPRN Splice_Site p.X932_splice 0.17 TCGA-D3-A3MV-06 2 223507586 223507586 G A FARSB Nonsense_Mutation p.Q85* 0.21 TCGA-D3-A3MV-06 2 238271994 238271994 C T COL6A3 Missense_Mutation p.E1989K 0.48 possibly_damaging(0.573) TCGA-D3-A3MV-06 2 242157683 242157683 C T ANO7 Silent p.F790F 0.19 TCGA-D3-A3MV-06 2 242716346 242716346 C T GAL3ST2 5'UTR 0.82 TCGA-D3-A3MV-06 2 27596815 27596815 G A SNX17 Missense_Mutation p.D137N 0.58 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A3MV-06 2 29294105 29294105 C T C2orf71 Missense_Mutation p.R1008K 0.28 tolerated(0.3) benign(0.034) TCGA-D3-A3MV-06 2 31562483 31562483 G A XDH Missense_Mutation p.P1216S 0.54 deleterious(0.02) probably_damaging(0.948) TCGA-D3-A3MV-06 2 32640294 32640294 C T BIRC6 Silent p.I645I 0.38 TCGA-D3-A3MV-06 2 39055483 39055483 G A DHX57 Nonsense_Mutation p.R880* 0.52 TCGA-D3-A3MV-06 2 71060133 71060133 G A CD207 Silent p.N205N 0.59 TCGA-D3-A3MV-06 2 71060134 71060134 T A CD207 Missense_Mutation p.N205I 0.59 deleterious(0) possibly_damaging(0.597) TCGA-D3-A3MV-06 2 73518772 73518772 A G EGR4 Missense_Mutation p.L528P 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 2 74710167 74710167 C T CCDC142 5'Flank 0.33 TCGA-D3-A3MV-06 2 77746532 77746532 C T LRRTM4 Missense_Mutation p.G155S 0.61 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MV-06 2 79384342 79384342 C T REG3A 3'UTR 0.30 TCGA-D3-A3MV-06 2 84517908 84517908 C T FUNDC2P2 RNA 0.21 TCGA-D3-A3MV-06 2 9547052 9547052 T G ITGB1BP1 Intron 0.48 TCGA-D3-A3MV-06 2 95481655 95481655 C T ANKRD20A8P RNA 0.39 TCGA-D3-A3MV-06 2 99448879 99448879 C T KIAA1211L Missense_Mutation p.D158N 0.31 deleterious(0) possibly_damaging(0.741) TCGA-D3-A3MV-06 3 100002625 100002625 T A TBC1D23 Missense_Mutation p.F149Y 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A3MV-06 3 102189262 102189262 G A ZPLD1 Missense_Mutation p.D336N 0.31 tolerated(0.14) benign(0.037) TCGA-D3-A3MV-06 3 10392084 10392084 C T ATP2B2 Missense_Mutation p.E772K 0.28 tolerated(0.33) possibly_damaging(0.519) TCGA-D3-A3MV-06 3 105400668 105400668 G A CBLB Intron 0.41 TCGA-D3-A3MV-06 3 107940986 107940986 G A IFT57 Missense_Mutation p.R62W 0.43 deleterious(0) possibly_damaging(0.892) TCGA-D3-A3MV-06 3 109023446 109023446 G A DPPA2 Missense_Mutation p.H244Y 0.43 deleterious(0.01) possibly_damaging(0.769) TCGA-D3-A3MV-06 3 111319573 111319573 G A CD96 Missense_Mutation p.G316E 0.28 tolerated(0.79) benign(0.027) TCGA-D3-A3MV-06 3 111632666 111632666 C T PHLDB2 Intron 0.38 TCGA-D3-A3MV-06 3 111936300 111936300 C T SLC9C1 Silent p.E593E 0.35 TCGA-D3-A3MV-06 3 113212090 113212090 G A SPICE1 Missense_Mutation p.T152I 0.30 deleterious(0) benign(0.277) TCGA-D3-A3MV-06 3 113955275 113955275 G T ZNF80 Missense_Mutation p.P216H 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A3MV-06 3 113955276 113955276 G T ZNF80 Missense_Mutation p.P216T 0.38 deleterious(0) probably_damaging(0.965) TCGA-D3-A3MV-06 3 113955903 113955903 C T ZNF80 Missense_Mutation p.G7R 0.29 tolerated(0.06) benign(0.293) TCGA-D3-A3MV-06 3 11885563 11885563 G A TAMM41 Silent p.S86S 0.33 TCGA-D3-A3MV-06 3 120973775 120973775 C T STXBP5L Missense_Mutation p.S492L 0.69 deleterious(0) possibly_damaging(0.493) TCGA-D3-A3MV-06 3 124951262 124951262 G A ZNF148 Missense_Mutation p.P770S 0.34 tolerated(0.29) benign(0.056) TCGA-D3-A3MV-06 3 125752456 125752456 G A SLC41A3 Silent p.L149L 0.36 TCGA-D3-A3MV-06 3 128813986 128813986 C T ISY1-RAB43 Missense_Mutation p.R293K 0.32 tolerated_low_confidence(0.22) benign(0.14) TCGA-D3-A3MV-06 3 1369179 1369179 G A CNTN6 Silent p.T374T 0.44 TCGA-D3-A3MV-06 3 1424750 1424750 G A CNTN6 Missense_Mutation p.R764K 0.43 tolerated(0.21) probably_damaging(0.992) TCGA-D3-A3MV-06 3 1443200 1443200 G A CNTN6 Missense_Mutation p.E930K 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A3MV-06 3 149290664 149290664 G A WWTR1 Silent p.S185S 0.43 TCGA-D3-A3MV-06 3 150344871 150344871 G A SELT Missense_Mutation p.E180K 0.37 tolerated(0.06) benign(0.437) TCGA-D3-A3MV-06 3 150391765 150391765 G A FAM194A Missense_Mutation p.P441S 0.35 deleterious(0) possibly_damaging(0.872) TCGA-D3-A3MV-06 3 156763413 156763413 G A LEKR1 Silent p.P651P 0.51 TCGA-D3-A3MV-06 3 158376735 158376735 T C GFM1 Missense_Mutation p.Y370H 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 3 164739070 164739070 G A SI Silent p.I1067I 0.39 TCGA-D3-A3MV-06 3 167167187 167167187 G A SERPINI2 Missense_Mutation p.S323L 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MV-06 3 168867401 168867401 C T MECOM 5'Flank 0.71 TCGA-D3-A3MV-06 3 169639031 169639031 C T SAMD7 Missense_Mutation p.T39I 0.38 tolerated(0.1) benign(0.012) TCGA-D3-A3MV-06 3 183381296 183381296 T C KLHL24 Missense_Mutation p.V324A 0.43 tolerated(0.73) benign(0.004) TCGA-D3-A3MV-06 3 183495355 183495355 C T YEATS2 Missense_Mutation p.S868L 0.49 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-D3-A3MV-06 3 183824064 183824064 G A HTR3E Silent p.G384G 0.35 TCGA-D3-A3MV-06 3 18436006 18436006 C T SATB1 Missense_Mutation p.R385Q 0.40 deleterious(0) benign(0.184) TCGA-D3-A3MV-06 3 191861772 191861772 A T FGF12 3'UTR 0.47 TCGA-D3-A3MV-06 3 19575158 19575158 C T KCNH8 Missense_Mutation p.S964F 0.42 tolerated_low_confidence(0.25) benign(0.002) TCGA-D3-A3MV-06 3 195936311 195936311 G A ZDHHC19 Missense_Mutation p.P115L 0.40 deleterious(0.02) possibly_damaging(0.493) TCGA-D3-A3MV-06 3 32411483 32411483 G A CMTM8 3'UTR 0.39 TCGA-D3-A3MV-06 3 36779466 36779466 G A DCLK3 Missense_Mutation p.P229S 0.50 tolerated(0.53) benign(0.003) TCGA-D3-A3MV-06 3 38647496 38647496 C T SCN5A Silent p.E428E 0.28 TCGA-D3-A3MV-06 3 38951590 38951590 C T SCN11A Missense_Mutation p.M356I 0.36 deleterious(0.02) benign(0.094) TCGA-D3-A3MV-06 3 41961249 41961249 G A ULK4 Silent p.D201D 0.32 TCGA-D3-A3MV-06 3 432737 432737 C T CHL1 Missense_Mutation p.P896S 0.40 tolerated(0.06) probably_damaging(1) TCGA-D3-A3MV-06 3 44844305 44844305 G A KIF15 Splice_Site p.X504_splice 0.43 TCGA-D3-A3MV-06 3 46450193 46450193 T C CCRL2 Missense_Mutation p.V220A 0.36 tolerated(1) possibly_damaging(0.672) TCGA-D3-A3MV-06 3 49059690 49059690 C T NDUFAF3 Intron 0.27 TCGA-D3-A3MV-06 3 49069662 49069662 G A QRICH1 Missense_Mutation p.P698S 0.46 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MV-06 3 49692966 49692966 G A BSN Missense_Mutation p.G1993S 0.24 unknown(0) TCGA-D3-A3MV-06 3 51967557 51967557 G A RRP9 Missense_Mutation p.R465C 0.33 deleterious(0) possibly_damaging(0.513) TCGA-D3-A3MV-06 3 52404564 52404564 C T DNAH1 Silent p.S2110S 0.38 TCGA-D3-A3MV-06 3 54962006 54962006 G A LRTM1 5'UTR 0.30 TCGA-D3-A3MV-06 3 62423879 62423879 C T CADPS Missense_Mutation p.G1226E 0.37 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A3MV-06 3 62423880 62423880 C T CADPS Missense_Mutation p.G1226R 0.35 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A3MV-06 3 85984971 85984971 C T CADM2 Missense_Mutation p.P245L 0.36 tolerated(0.35) benign(0.026) TCGA-D3-A3MV-06 3 9055154 9055154 G A SRGAP3 Missense_Mutation p.T662I 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 3 97806033 97806033 G A OR5AC2 Missense_Mutation p.G6E 0.33 tolerated(1) benign(0.001) TCGA-D3-A3MV-06 3 97806188 97806188 C T OR5AC2 Missense_Mutation p.H58Y 0.34 deleterious(0) benign(0.12) TCGA-D3-A3MV-06 4 104029996 104029996 G A CENPE Missense_Mutation p.R2659C 0.78 benign(0.015) TCGA-D3-A3MV-06 4 123377636 123377636 G A IL2 5'UTR 0.65 TCGA-D3-A3MV-06 4 124235123 124235123 C T SPATA5 Silent p.F862F 0.78 TCGA-D3-A3MV-06 4 134072069 134072069 C T PCDH10 Silent p.S258S 0.62 TCGA-D3-A3MV-06 4 145985797 145985797 G A ANAPC10 Missense_Mutation p.S85F 0.85 tolerated(0.11) possibly_damaging(0.477) TCGA-D3-A3MV-06 4 175898946 175898946 C T ADAM29 Missense_Mutation p.S757F 0.72 deleterious(0.01) benign(0.015) TCGA-D3-A3MV-06 4 177608435 177608435 G A VEGFC Nonsense_Mutation p.Q351* 0.66 TCGA-D3-A3MV-06 4 184930405 184930405 C T STOX2 Silent p.I138I 0.44 TCGA-D3-A3MV-06 4 2927835 2927835 G A ADD1 Silent p.E650E 0.86 TCGA-D3-A3MV-06 4 42145696 42145696 G A BEND4 Missense_Mutation p.S268L 0.64 tolerated_low_confidence(0.12) possibly_damaging(0.885) TCGA-D3-A3MV-06 4 47676496 47676496 C T CORIN Missense_Mutation p.G424E 0.76 deleterious(0) benign(0.32) TCGA-D3-A3MV-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.70 tolerated(0.48) benign(0.199) TCGA-D3-A3MV-06 4 55984957 55984957 C T KDR Missense_Mutation p.D58N 0.69 tolerated(0.44) benign(0.004) TCGA-D3-A3MV-06 4 68459042 68459042 G A STAP1 Missense_Mutation p.R265K 0.65 tolerated(0.73) benign(0.012) TCGA-D3-A3MV-06 4 7056214 7056214 C T TADA2B Silent p.F232F 0.70 TCGA-D3-A3MV-06 4 8221094 8221094 C T SH3TC1 Nonsense_Mutation p.Q317* 0.37 TCGA-D3-A3MV-06 4 89326115 89326115 A T HERC6 Nonsense_Mutation p.K394* 0.38 TCGA-D3-A3MV-06 4 95583616 95583616 T C PDLIM5 Silent p.F572F 0.65 TCGA-D3-A3MV-06 4 9784592 9784592 C T DRD5 Silent p.F313F 0.58 TCGA-D3-A3MV-06 5 102203051 102203051 C T PAM Missense_Mutation p.S55L 0.60 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A3MV-06 5 128302295 128302295 C T SLC27A6 Silent p.A155A 0.76 TCGA-D3-A3MV-06 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.35 TCGA-D3-A3MV-06 5 13862838 13862838 C T DNAH5 Missense_Mutation p.V1539M 0.64 possibly_damaging(0.86) TCGA-D3-A3MV-06 5 140214080 140214080 G A PCDHA7 Missense_Mutation p.E38K 0.77 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-D3-A3MV-06 5 140554380 140554380 C T PCDHB7 Missense_Mutation p.T655I 0.14 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-D3-A3MV-06 5 140558738 140558738 G A PCDHB8 Missense_Mutation p.D375N 0.11 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D3-A3MV-06 5 140573554 140573554 G A PCDHB10 Missense_Mutation p.D477N 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MV-06 5 140719075 140719075 C T PCDHGA2 Silent p.S179S 0.70 TCGA-D3-A3MV-06 5 140725506 140725506 G A PCDHGA3 Missense_Mutation p.D636N 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A3MV-06 5 140797886 140797886 C T PCDHGB7 Missense_Mutation p.L154F 0.70 deleterious(0.04) possibly_damaging(0.464) TCGA-D3-A3MV-06 5 143853695 143853695 G A KCTD16 3'UTR 0.61 TCGA-D3-A3MV-06 5 147040965 147040965 A G JAKMIP2 Missense_Mutation p.I58T 0.70 tolerated(0.22) benign(0.128) TCGA-D3-A3MV-06 5 147900490 147900490 G A HTR4 Intron 0.70 TCGA-D3-A3MV-06 5 169535120 169535120 G A FOXI1 Silent p.R214R 0.66 TCGA-D3-A3MV-06 5 174869909 174869909 G A DRD1 Missense_Mutation p.S65F 0.82 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 5 176308809 176308809 G A HK3 Silent p.I759I 0.65 TCGA-D3-A3MV-06 5 41005705 41005705 C T MROH2B Missense_Mutation p.M1264I 0.55 tolerated(0.23) benign(0.002) TCGA-D3-A3MV-06 5 41510611 41510611 C T PLCXD3 Silent p.G6G 0.63 TCGA-D3-A3MV-06 5 42719517 42719517 C T GHR Silent p.I636I 0.72 TCGA-D3-A3MV-06 5 55260006 55260006 G A IL6ST Missense_Mutation p.S209L 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 5 64079668 64079668 A G CWC27 Silent p.E86E 0.71 TCGA-D3-A3MV-06 5 93076865 93076865 C T POU5F2 Silent p.Q135Q 0.58 TCGA-D3-A3MV-06 5 94927309 94927309 A G ARSK Missense_Mutation p.D359G 0.75 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 6 105280966 105280966 G A HACE1 Missense_Mutation p.A162V 0.40 deleterious(0.05) possibly_damaging(0.893) TCGA-D3-A3MV-06 6 112393216 112393216 G A TUBE1 Silent p.S386S 0.39 TCGA-D3-A3MV-06 6 117121792 117121792 G A GPRC6A Silent p.F501F 0.34 TCGA-D3-A3MV-06 6 117243285 117243285 G A RFX6 Missense_Mutation p.D470N 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3MV-06 6 128304508 128304508 C T PTPRK Missense_Mutation p.R1095Q 0.22 deleterious(0) probably_damaging(0.981) TCGA-D3-A3MV-06 6 128505788 128505788 G A PTPRK Silent p.I317I 0.31 TCGA-D3-A3MV-06 6 12934153 12934153 G A PHACTR1 3'UTR 0.29 TCGA-D3-A3MV-06 6 130762616 130762616 C T TMEM200A Missense_Mutation p.S350F 0.38 deleterious(0.02) possibly_damaging(0.451) TCGA-D3-A3MV-06 6 133595874 133595874 G A EYA4 5'UTR 0.38 TCGA-D3-A3MV-06 6 138202424 138202424 G A TNFAIP3 Missense_Mutation p.E781K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3MV-06 6 139094904 139094904 C T CCDC28A Silent p.F31F 0.31 TCGA-D3-A3MV-06 6 139167687 139167687 C T ECT2L Missense_Mutation p.S259F 0.28 tolerated(0.12) benign(0.015) TCGA-D3-A3MV-06 6 146262942 146262942 G A SHPRH Silent p.I769I 0.29 TCGA-D3-A3MV-06 6 15496653 15496653 C T JARID2 Silent p.S399S 0.41 TCGA-D3-A3MV-06 6 155578999 155578999 C T TFB1M Missense_Mutation p.E338K 0.31 tolerated(0.29) unknown(0) TCGA-D3-A3MV-06 6 159687132 159687132 G A FNDC1 Nonsense_Mutation p.W1767* 0.35 TCGA-D3-A3MV-06 6 160485503 160485503 C T IGF2R Silent p.C1319C 0.41 TCGA-D3-A3MV-06 6 161781175 161781175 G A PARK2 Silent p.T410T 0.36 TCGA-D3-A3MV-06 6 166571784 166571784 G A T 3'UTR 0.34 TCGA-D3-A3MV-06 6 168927078 168927078 G A SMOC2 Silent p.K103K 0.33 TCGA-D3-A3MV-06 6 170594204 170594204 G A DLL1 Missense_Mutation p.S351F 0.36 tolerated(0.05) benign(0.078) TCGA-D3-A3MV-06 6 17463250 17463250 C T CAP2 Silent p.F82F 0.13 TCGA-D3-A3MV-06 6 25610296 25610296 C T LRRC16A Missense_Mutation p.P1289L 0.15 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-D3-A3MV-06 6 27835291 27835291 G A HIST1H1B Missense_Mutation p.P6L 0.59 deleterious(0.03) unknown(0) TCGA-D3-A3MV-06 6 28194839 28194839 C T ZSCAN9 5'UTR 0.19 TCGA-D3-A3MV-06 6 28540518 28540518 G A SCAND3 Missense_Mutation p.H1050Y 0.38 tolerated(0.2) benign(0.001) TCGA-D3-A3MV-06 6 29275264 29275264 G A OR14J1 Silent p.S266S 0.47 TCGA-D3-A3MV-06 6 30164359 30164359 G A TRIM26 Silent p.A233A 0.38 TCGA-D3-A3MV-06 6 32026050 32026050 G A TNXB Missense_Mutation p.S2537L 0.13 probably_damaging(0.984) TCGA-D3-A3MV-06 6 32052356 32052356 C T TNXB Silent p.V1093V 0.33 TCGA-D3-A3MV-06 6 36177996 36177996 C T BRPF3 Missense_Mutation p.P624S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A3MV-06 6 38813380 38813380 G A DNAH8 Missense_Mutation p.D1409N 0.24 benign(0.291) TCGA-D3-A3MV-06 6 38997949 38997949 G T DNAH8 Missense_Mutation p.M4418I 0.44 benign(0) TCGA-D3-A3MV-06 6 41166097 41166097 G A TREML2 Silent p.S42S 0.38 TCGA-D3-A3MV-06 6 42946034 42946034 G A PEX6 Silent p.P285P 0.40 TCGA-D3-A3MV-06 6 46787370 46787370 G A MEP1A Missense_Mutation p.G162E 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 6 47221207 47221207 C T TNFRSF21 Missense_Mutation p.D432N 0.33 deleterious(0) probably_damaging(0.986) TCGA-D3-A3MV-06 6 5216856 5216856 G A LYRM4 Nonsense_Mutation p.R68* 0.17 TCGA-D3-A3MV-06 6 53778708 53778708 G A LRRC1 Silent p.R349R 0.28 TCGA-D3-A3MV-06 6 53989510 53989510 G A MLIP Silent p.G153G 0.26 TCGA-D3-A3MV-06 6 54130789 54130789 G A MLIP 3'UTR 0.53 TCGA-D3-A3MV-06 6 63990433 63990433 C T LGSN Silent p.G341G 0.29 TCGA-D3-A3MV-06 6 72596752 72596752 G A RIMS1 Missense_Mutation p.G9D 0.42 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D3-A3MV-06 6 74072880 74072880 C T KHDC3L Nonsense_Mutation p.R78* 0.45 TCGA-D3-A3MV-06 6 78172692 78172692 G A HTR1B Silent p.I143I 0.33 TCGA-D3-A3MV-06 6 7880313 7880313 C A BMP6 Missense_Mutation p.N457K 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 6 93956529 93956529 G A EPHA7 Missense_Mutation p.P903S 0.28 tolerated(0.74) benign(0.015) TCGA-D3-A3MV-06 6 94120594 94120594 C T EPHA7 Missense_Mutation p.E153K 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A3MV-06 7 102524023 102524023 C T FBXL13 Missense_Mutation p.R406Q 0.47 deleterious(0.02) possibly_damaging(0.611) TCGA-D3-A3MV-06 7 107408083 107408083 C T SLC26A3 Missense_Mutation p.D738N 0.48 tolerated(0.28) benign(0.048) TCGA-D3-A3MV-06 7 107601669 107601669 G A LAMB1 Silent p.P697P 0.44 TCGA-D3-A3MV-06 7 128413867 128413867 C T OPN1SW Missense_Mutation p.V255I 0.40 deleterious(0.04) possibly_damaging(0.883) TCGA-D3-A3MV-06 7 128480673 128480673 G A FLNC Missense_Mutation p.V541M 0.41 tolerated(0.27) benign(0.016) TCGA-D3-A3MV-06 7 129841882 129841882 G A TMEM209 Silent p.P127P 0.36 TCGA-D3-A3MV-06 7 129841883 129841883 G T TMEM209 Missense_Mutation p.P127H 0.34 deleterious(0) possibly_damaging(0.454) TCGA-D3-A3MV-06 7 130364146 130364146 C T TSGA13 Silent p.R78R 0.56 TCGA-D3-A3MV-06 7 132192551 132192551 T C PLXNA4 Missense_Mutation p.E301G 0.32 tolerated(0.06) benign(0.002) TCGA-D3-A3MV-06 7 133948804 133948804 G A LRGUK 3'UTR 0.42 TCGA-D3-A3MV-06 7 138281185 138281185 C T SVOPL Missense_Mutation p.E482K 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MV-06 7 138418934 138418934 G A ATP6V0A4 Silent p.I546I 0.44 TCGA-D3-A3MV-06 7 141349069 141349069 G A AGK Missense_Mutation p.E328K 0.31 tolerated(0.24) benign(0.06) TCGA-D3-A3MV-06 7 141619006 141619006 G A OR9A4 Missense_Mutation p.E111K 0.45 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A3MV-06 7 141619367 141619367 C T OR9A4 Missense_Mutation p.S231F 0.43 deleterious(0.01) benign(0.016) TCGA-D3-A3MV-06 7 142198030 142198030 G A TRBV11-2 RNA 0.26 TCGA-D3-A3MV-06 7 143095045 143095045 G A EPHA1 Missense_Mutation p.S528F 0.33 deleterious(0.01) probably_damaging(1) TCGA-D3-A3MV-06 7 143632997 143632997 C T OR2F2 Silent p.T224T 0.36 TCGA-D3-A3MV-06 7 144061036 144061036 C T ARHGEF5 Missense_Mutation p.A425V 0.41 tolerated(0.75) benign(0.01) TCGA-D3-A3MV-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.46 tolerated(0.95) benign(0) TCGA-D3-A3MV-06 7 150325268 150325268 G A GIMAP6 Nonsense_Mutation p.Q140* 0.32 TCGA-D3-A3MV-06 7 150698379 150698379 G A NOS3 Missense_Mutation p.E432K 0.40 deleterious(0) probably_damaging(0.994) TCGA-D3-A3MV-06 7 20406796 20406796 C T ITGB8 Silent p.I125I 0.65 TCGA-D3-A3MV-06 7 20687681 20687681 C T ABCB5 Missense_Mutation p.P396S 0.78 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 7 21646282 21646282 C T DNAH11 Silent p.F1261F 0.67 TCGA-D3-A3MV-06 7 38725602 38725602 C T FAM183B Missense_Mutation p.A2T 0.67 tolerated(0.05) possibly_damaging(0.824) TCGA-D3-A3MV-06 7 43484956 43484956 G A HECW1 Missense_Mutation p.E729K 0.43 deleterious_low_confidence(0.02) benign(0.359) TCGA-D3-A3MV-06 7 45791226 45791226 C T SEPT7P2 RNA 0.38 TCGA-D3-A3MV-06 7 47832247 47832249 ATG TA PKD1L1 Frame_Shift_Del p.S2836Lfs*30 0.27 TCGA-D3-A3MV-06 7 47876654 47876654 G A PKD1L1 Silent p.F1936F 0.29 TCGA-D3-A3MV-06 7 48559846 48559846 C T ABCA13 Silent p.L4669L 0.44 TCGA-D3-A3MV-06 7 56149604 56149604 C T PHKG1 Silent p.S290S 0.30 TCGA-D3-A3MV-06 7 73481102 73481102 C T ELN Silent p.F709F 0.23 TCGA-D3-A3MV-06 7 86526897 86526897 C T KIAA1324L Silent p.E870E 0.40 TCGA-D3-A3MV-06 7 94898759 94898759 G A PPP1R9A Missense_Mutation p.D1022N 0.32 tolerated(0.54) benign(0.007) TCGA-D3-A3MV-06 7 94944801 94944801 C T PON1 Missense_Mutation p.G68E 0.35 deleterious(0.03) probably_damaging(1) TCGA-D3-A3MV-06 7 96746946 96746946 C T ACN9 5'UTR 0.55 TCGA-D3-A3MV-06 7 97874278 97874278 C T TECPR1 Silent p.V109V 0.40 TCGA-D3-A3MV-06 7 98573802 98573802 C T TRRAP Silent p.L2617L 0.36 TCGA-D3-A3MV-06 7 99367835 99367835 C T CYP3A4 Missense_Mutation p.M114I 0.38 deleterious(0.02) possibly_damaging(0.742) TCGA-D3-A3MV-06 8 102505011 102505011 C T GRHL2 Missense_Mutation p.S5L 0.27 tolerated(0.74) benign(0.002) TCGA-D3-A3MV-06 8 110453598 110453598 G A PKHD1L1 Silent p.G1398G 0.46 TCGA-D3-A3MV-06 8 110493695 110493695 C T PKHD1L1 Missense_Mutation p.P3121S 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A3MV-06 8 110980337 110980337 C T KCNV1 Missense_Mutation p.G495R 0.40 deleterious(0) possibly_damaging(0.893) TCGA-D3-A3MV-06 8 120435393 120435393 C T NOV 3'UTR 0.25 TCGA-D3-A3MV-06 8 120435394 120435394 C T NOV 3'UTR 0.25 TCGA-D3-A3MV-06 8 125076659 125076659 C T FER1L6 Missense_Mutation p.H1134Y 0.41 tolerated(0.14) benign(0.001) TCGA-D3-A3MV-06 8 125551344 125551344 C T TATDN1 5'Flank 0.52 TCGA-D3-A3MV-06 8 12957987 12957987 G A DLC1 Missense_Mutation p.S620F 0.57 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A3MV-06 8 135614561 135614561 G A ZFAT Silent p.F467F 0.26 TCGA-D3-A3MV-06 8 139165169 139165169 C T FAM135B Missense_Mutation p.E517K 0.46 tolerated(0.27) benign(0.007) TCGA-D3-A3MV-06 8 139165196 139165196 G A FAM135B Nonsense_Mutation p.Q508* 0.26 TCGA-D3-A3MV-06 8 139824127 139824127 G A COL22A1 Missense_Mutation p.P455L 0.75 unknown(0) TCGA-D3-A3MV-06 8 142166030 142166030 C T DENND3 Missense_Mutation p.P306L 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 8 14412268 14412268 C T SGCZ Nonsense_Mutation p.W69* 0.26 TCGA-D3-A3MV-06 8 144940333 144940333 G A EPPK1 Silent p.Y2363Y 0.04 TCGA-D3-A3MV-06 8 145112555 145112555 G A OPLAH Silent p.F406F 0.09 TCGA-D3-A3MV-06 8 1497661 1497661 G A DLGAP2 Missense_Mutation p.D268N 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 8 1626678 1626678 C T DLGAP2 Missense_Mutation p.P783S 0.40 tolerated(0.23) probably_damaging(0.995) TCGA-D3-A3MV-06 8 2037890 2037890 G A MYOM2 Silent p.P568P 0.66 TCGA-D3-A3MV-06 8 23003370 23003370 C T TNFRSF10D Missense_Mutation p.E183K 0.52 tolerated(0.55) benign(0.008) TCGA-D3-A3MV-06 8 24181448 24181448 G A ADAM28 Silent p.E274E 0.22 TCGA-D3-A3MV-06 8 24188792 24188792 G A ADAM28 Silent p.G411G 0.33 TCGA-D3-A3MV-06 8 24300035 24300035 G A ADAM7 Silent p.K34K 0.30 TCGA-D3-A3MV-06 8 24771739 24771739 C T NEFM Nonsense_Mutation p.Q145* 0.56 TCGA-D3-A3MV-06 8 38831791 38831791 A C HTRA4 Missense_Mutation p.R3S 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.788) TCGA-D3-A3MV-06 8 39142368 39142368 G A ADAM32 3'UTR 0.53 TCGA-D3-A3MV-06 8 39604019 39604020 - T ADAM2 Frame_Shift_Ins p.W716Mfs*4 0.32 TCGA-D3-A3MV-06 8 41399651 41399651 C T GINS4 3'UTR 0.52 TCGA-D3-A3MV-06 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.57 deleterious(0) probably_damaging(0.989) TCGA-D3-A3MV-06 8 56985774 56985774 G A RPS20 Missense_Mutation p.R79C 0.45 deleterious(0.04) benign(0.235) TCGA-D3-A3MV-06 8 57218206 57218206 T C SDR16C5 Silent p.K262K 0.51 TCGA-D3-A3MV-06 8 65509352 65509352 A - CYP7B1 Frame_Shift_Del p.M457Wfs*3 0.32 TCGA-D3-A3MV-06 8 69069587 69069587 G A PREX2 Missense_Mutation p.R1421K 0.19 tolerated(0.58) benign(0.003) TCGA-D3-A3MV-06 8 71646559 71646559 G A XKR9 Missense_Mutation p.G341E 0.27 tolerated(0.66) benign(0.259) TCGA-D3-A3MV-06 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.43 deleterious(0) possibly_damaging(0.547) TCGA-D3-A3MV-06 8 77766897 77766897 G A ZFHX4 Silent p.R2580R 0.18 TCGA-D3-A3MV-06 8 85441693 85441693 G A RALYL Missense_Mutation p.G59E 0.46 deleterious(0) probably_damaging(0.997) TCGA-D3-A3MV-06 8 87165108 87165108 A C ATP6V0D2 Missense_Mutation p.K319Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-D3-A3MV-06 8 94747873 94747873 G A RBM12B Missense_Mutation p.P256S 0.28 tolerated(0.35) benign(0.012) TCGA-D3-A3MV-06 8 95653482 95653482 C T ESRP1 5'UTR 0.27 TCGA-D3-A3MV-06 9 108467982 108467982 C T TMEM38B Missense_Mutation p.P73S 0.70 deleterious(0.02) probably_damaging(0.917) TCGA-D3-A3MV-06 9 113170022 113170022 C T SVEP1 Missense_Mutation p.D2620N 0.73 probably_damaging(0.999) TCGA-D3-A3MV-06 9 116808 116808 G A FOXD4 Missense_Mutation p.P438S 0.26 benign(0) TCGA-D3-A3MV-06 9 123779744 123779744 C T C5 Missense_Mutation p.V588M 0.66 tolerated(0.18) possibly_damaging(0.507) TCGA-D3-A3MV-06 9 125239735 125239735 A C OR1J1 Silent p.L157L 0.69 TCGA-D3-A3MV-06 9 127915925 127915925 G A PPP6C Missense_Mutation p.P223S 0.76 deleterious(0) probably_damaging(0.947) TCGA-D3-A3MV-06 9 131939648 131939648 G A IER5L Silent p.A228A 0.74 TCGA-D3-A3MV-06 9 133787192 133787192 C T FIBCD1 Silent p.G311G 0.70 TCGA-D3-A3MV-06 9 137778323 137778323 C T FCN2 Nonsense_Mutation p.Q203* 0.68 TCGA-D3-A3MV-06 9 140139596 140139596 G A FAM166A Silent p.F199F 0.71 TCGA-D3-A3MV-06 9 140332468 140332468 C T ENTPD8 Silent p.K65K 0.28 TCGA-D3-A3MV-06 9 2086993 2086993 C T SMARCA2 Silent p.F897F 0.58 TCGA-D3-A3MV-06 9 21239422 21239422 G A IFNA14 Silent p.I171I 0.59 TCGA-D3-A3MV-06 9 2181573 2181573 C T SMARCA2 Missense_Mutation p.S1419L 0.67 possibly_damaging(0.698) TCGA-D3-A3MV-06 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.77 TCGA-D3-A3MV-06 9 22451440 22451440 C T DMRTA1 Silent p.L349L 0.68 TCGA-D3-A3MV-06 9 77343174 77343174 G A TRPM6 Silent p.C1972C 0.82 TCGA-D3-A3MV-06 9 90501321 90501321 C T SPATA31E1 Missense_Mutation p.S640F 0.52 tolerated(0.12) possibly_damaging(0.831) TCGA-D3-A3MV-06 9 90501427 90501427 C T SPATA31E1 Silent p.L675L 0.62 TCGA-D3-A3MV-06 9 91686121 91686121 C T SHC3 Missense_Mutation p.G259E 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A3MV-06 9 91993689 91993689 G A SEMA4D Missense_Mutation p.S840F 0.67 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-D3-A3MV-06 9 97333797 97333797 T C FBP2 Missense_Mutation p.T172A 0.69 tolerated(0.17) possibly_damaging(0.529) TCGA-D3-A3MV-06 X 100243250 100243250 A G ARL13A Missense_Mutation p.K241R 0.31 tolerated_low_confidence(1) benign(0.004) TCGA-D3-A3MV-06 X 100290673 100290673 C T TRMT2B Splice_Site p.X180_splice 0.13 TCGA-D3-A3MV-06 X 100349862 100349862 G A TMEM35 Missense_Mutation p.E141K 0.41 tolerated(0.17) benign(0.004) TCGA-D3-A3MV-06 X 100626636 100626636 G A BTK Silent p.F98F 0.59 TCGA-D3-A3MV-06 X 101138892 101138892 G A ZMAT1 Nonsense_Mutation p.Q503* 0.35 TCGA-D3-A3MV-06 X 10181783 10181783 G A CLCN4 Missense_Mutation p.E547K 0.05 tolerated(0.13) possibly_damaging(0.793) TCGA-D3-A3MV-06 X 105450224 105450224 G A MUM1L1 Missense_Mutation p.A267T 0.71 tolerated(0.2) benign(0.012) TCGA-D3-A3MV-06 X 107315930 107315930 A - VSIG1 Frame_Shift_Del p.S182Afs*40 0.28 TCGA-D3-A3MV-06 X 109696473 109696473 G A RGAG1 Missense_Mutation p.M876I 0.10 tolerated(0.16) benign(0.007) TCGA-D3-A3MV-06 X 109764525 109764525 G A TDGF1P3 RNA 0.24 TCGA-D3-A3MV-06 X 111698178 111698178 C T ZCCHC16 Silent p.F74F 0.57 TCGA-D3-A3MV-06 X 118971941 118971941 G A UPF3B Nonsense_Mutation p.R361* 0.06 TCGA-D3-A3MV-06 X 127185188 127185188 G A ACTRT1 Missense_Mutation p.S333F 0.11 deleterious(0) benign(0.311) TCGA-D3-A3MV-06 X 127186097 127186097 C T ACTRT1 Missense_Mutation p.G30E 0.51 tolerated(0.21) probably_damaging(0.993) TCGA-D3-A3MV-06 X 12905625 12905625 T C TLR7 Silent p.P666P 0.47 TCGA-D3-A3MV-06 X 130409260 130409260 C T IGSF1 Missense_Mutation p.G1067D 0.12 tolerated(0.1) probably_damaging(1) TCGA-D3-A3MV-06 X 135092658 135092658 G A SLC9A6 Silent p.A319A 0.10 TCGA-D3-A3MV-06 X 135570657 135570657 C T BRS3 Silent p.L128L 0.05 TCGA-D3-A3MV-06 X 140969393 140969393 C T MAGEC3 Silent p.S240S 0.60 TCGA-D3-A3MV-06 X 140996047 140996047 G A MAGEC1 Missense_Mutation p.A953T 0.58 deleterious(0.01) unknown(0) TCGA-D3-A3MV-06 X 148037297 148037297 G A AFF2 Silent p.T574T 0.53 TCGA-D3-A3MV-06 X 151818907 151818907 G A GABRQ Silent p.L255L 0.09 TCGA-D3-A3MV-06 X 151904470 151904470 G A CSAG1 5'UTR 0.17 TCGA-D3-A3MV-06 X 153925421 153925421 G A GAB3 Silent p.T471T 0.13 TCGA-D3-A3MV-06 X 154020553 154020553 G A MPP1 Missense_Mutation p.S37L 0.10 tolerated(0.56) benign(0.001) TCGA-D3-A3MV-06 X 18221933 18221933 C T BEND2 Missense_Mutation p.E199K 0.41 deleterious(0.02) benign(0.194) TCGA-D3-A3MV-06 X 19028764 19028764 G A GPR64 Missense_Mutation p.S411F 0.12 deleterious(0.02) possibly_damaging(0.62) TCGA-D3-A3MV-06 X 24006881 24006881 G A KLHL15 Silent p.I324I 0.49 TCGA-D3-A3MV-06 X 3030310 3030310 G A ARSF Missense_Mutation p.E496K 0.42 tolerated(0.23) benign(0.049) TCGA-D3-A3MV-06 X 3228885 3228885 C T MXRA5 Silent p.R2453R 0.42 TCGA-D3-A3MV-06 X 3235891 3235891 G A MXRA5 Missense_Mutation p.S1944L 0.05 tolerated(0.13) benign(0.105) TCGA-D3-A3MV-06 X 34961323 34961323 G A FAM47B Silent p.L125L 0.11 TCGA-D3-A3MV-06 X 73960605 73960605 G A KIAA2022 Nonsense_Mutation p.Q1263* 0.27 TCGA-D3-A3MV-06 X 76939747 76939747 G A ATRX Missense_Mutation p.S334F 0.46 benign(0.309) TCGA-D3-A3MV-06 X 78427035 78427035 C T GPR174 Silent p.V177V 0.42 TCGA-D3-A3MV-06 X 84526097 84526097 C T ZNF711 Missense_Mutation p.P517S 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A3MV-06 X 84526218 84526218 G A ZNF711 Missense_Mutation p.G557D 0.47 deleterious(0.02) possibly_damaging(0.814) TCGA-D3-A3MV-06 X 84537226 84537226 C T POF1B Missense_Mutation p.E583K 0.21 tolerated_low_confidence(0.2) probably_damaging(0.997) TCGA-D3-A51E-06 10 101370957 101370957 G A SLC25A28 Silent p.F248F 0.31 TCGA-D3-A51E-06 10 105561083 105561083 G A SH3PXD2A Missense_Mutation p.S37F 0.43 deleterious(0) possibly_damaging(0.684) TCGA-D3-A51E-06 10 121586700 121586700 C T INPP5F Missense_Mutation p.P936L 0.37 deleterious_low_confidence(0.03) benign(0.001) TCGA-D3-A51E-06 10 124392850 124392850 G A DMBT1 Missense_Mutation p.D2052N 0.25 tolerated(0.09) possibly_damaging(0.903) TCGA-D3-A51E-06 10 14939068 14939068 G A SUV39H2 Missense_Mutation p.R134K 0.38 tolerated(0.26) possibly_damaging(0.892) TCGA-D3-A51E-06 10 18284622 18284622 T A SLC39A12 Missense_Mutation p.I524K 0.37 tolerated(0.96) benign(0.009) TCGA-D3-A51E-06 10 32097592 32097592 A C ARHGAP12 Missense_Mutation p.F784C 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A51E-06 10 45907653 45907653 A G ALOX5 Missense_Mutation p.N149S 0.40 tolerated(0.82) benign(0) TCGA-D3-A51E-06 10 55582728 55582728 C T PCDH15 Silent p.R1588R 0.45 TCGA-D3-A51E-06 10 92678945 92678945 C T ANKRD1 Silent p.R96R 0.23 TCGA-D3-A51E-06 10 93390343 93390343 G A PPP1R3C Missense_Mutation p.H99Y 0.33 tolerated(0.08) benign(0.209) TCGA-D3-A51E-06 10 95169418 95169418 C T MYOF Missense_Mutation p.G171E 0.33 tolerated(0.1) benign(0.027) TCGA-D3-A51E-06 11 10508883 10508883 C T AMPD3 Missense_Mutation p.P313L 0.42 deleterious(0) possibly_damaging(0.792) TCGA-D3-A51E-06 11 111680403 111680403 A G ALG9 Missense_Mutation p.I395T 0.48 tolerated(1) benign(0.001) TCGA-D3-A51E-06 11 113857657 113857657 C T HTR3A Silent p.L381L 0.60 TCGA-D3-A51E-06 11 12313730 12313730 G A MICALCL Silent p.K5K 0.39 TCGA-D3-A51E-06 11 124266544 124266544 G A OR8B3 Missense_Mutation p.S235L 0.46 deleterious_low_confidence(0.02) benign(0.009) TCGA-D3-A51E-06 11 124310332 124310332 G A OR8B8 Missense_Mutation p.S217F 0.51 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-D3-A51E-06 11 1263619 1263619 G A MUC5B Missense_Mutation p.E1837K 0.45 unknown(0) TCGA-D3-A51E-06 11 17414565 17414565 G A ABCC8 Silent p.F1573F 0.32 TCGA-D3-A51E-06 11 22294440 22294440 A T ANO5 Missense_Mutation p.T714S 0.36 deleterious(0.04) benign(0.194) TCGA-D3-A51E-06 11 32705054 32705054 G A CCDC73 Intron 0.20 TCGA-D3-A51E-06 11 45880325 45880325 C T CRY2 Missense_Mutation p.P144L 0.42 deleterious(0) probably_damaging(0.965) TCGA-D3-A51E-06 11 47684587 47684587 C T AGBL2 Silent p.G842G 0.38 TCGA-D3-A51E-06 11 55135679 55135679 C T OR4A15 Missense_Mutation p.P107L 0.25 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-D3-A51E-06 11 55433564 55433564 G A OR4C6 Missense_Mutation p.G308R 0.36 tolerated_low_confidence(0.05) benign(0.007) TCGA-D3-A51E-06 11 55944192 55944192 G A OR5J2 Silent p.V33V 0.34 TCGA-D3-A51E-06 11 56431806 56431806 C T OR5AR1 Silent p.F215F 0.41 TCGA-D3-A51E-06 11 58125889 58125889 G A OR5B17 Silent p.F218F 0.28 TCGA-D3-A51E-06 11 6007904 6007904 G A OR52L1 Missense_Mutation p.A86V 0.40 tolerated(1) benign(0.049) TCGA-D3-A51E-06 11 64572586 64572586 C A MEN1 Nonsense_Mutation p.E429* 0.62 TCGA-D3-A51E-06 11 6977274 6977274 G A ZNF215 Missense_Mutation p.E356K 0.33 tolerated(0.19) benign(0.003) TCGA-D3-A51E-06 11 92087970 92087970 G A FAT3 Missense_Mutation p.A898T 0.29 benign(0.202) TCGA-D3-A51E-06 11 92532199 92532199 T C FAT3 Missense_Mutation p.V2007A 0.60 benign(0.37) TCGA-D3-A51E-06 11 93806473 93806473 G A HEPHL1 Splice_Site p.X458_splice 0.68 TCGA-D3-A51E-06 12 100787170 100787170 T C SLC17A8 Missense_Mutation p.L166S 0.39 tolerated(0.46) probably_damaging(0.93) TCGA-D3-A51E-06 12 103981233 103981233 G A STAB2 5'UTR 0.33 TCGA-D3-A51E-06 12 109293228 109293228 C T DAO Missense_Mutation p.R297C 0.33 tolerated(0.2) benign(0.005) TCGA-D3-A51E-06 12 110968380 110968380 C A RAD9B Missense_Mutation p.F392L 0.27 tolerated(0.74) benign(0.003) TCGA-D3-A51E-06 12 117923448 117923448 G A KSR2 Silent p.I756I 0.36 TCGA-D3-A51E-06 12 120654436 120654436 C T PXN Intron 0.60 TCGA-D3-A51E-06 12 121932414 121932414 G A KDM2B Missense_Mutation p.P568S 0.42 deleterious(0) benign(0.369) TCGA-D3-A51E-06 12 132562024 132562024 A G EP400 Missense_Mutation p.T3060A 0.28 possibly_damaging(0.478) TCGA-D3-A51E-06 12 18891674 18891674 C T CAPZA3 Missense_Mutation p.H158Y 0.33 deleterious(0) probably_damaging(0.95) TCGA-D3-A51E-06 12 49441820 49441820 C T KMT2D Silent p.R1388R 0.18 TCGA-D3-A51E-06 12 49441821 49441821 C T KMT2D Missense_Mutation p.R1388Q 0.19 probably_damaging(0.997) TCGA-D3-A51E-06 12 49949469 49949469 G A KCNH3 Missense_Mutation p.G735R 0.16 tolerated(0.19) benign(0.096) TCGA-D3-A51E-06 12 49949470 49949470 G A KCNH3 Missense_Mutation p.G735E 0.16 tolerated(0.43) benign(0.004) TCGA-D3-A51E-06 12 53292602 53292602 C T KRT8 Missense_Mutation p.E383K 0.29 tolerated(0.12) benign(0.012) TCGA-D3-A51E-06 12 55725661 55725661 C T OR6C3 Silent p.F59F 0.33 TCGA-D3-A51E-06 12 55794908 55794908 T C OR6C65 Missense_Mutation p.L199S 0.40 tolerated_low_confidence(0.53) benign(0.015) TCGA-D3-A51E-06 12 56749257 56749257 G A STAT2 Silent p.S147S 0.35 TCGA-D3-A51E-06 12 66232315 66232315 G A HMGA2 Missense_Mutation p.G72E 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A51E-06 12 66838466 66838466 C T GRIP1 Missense_Mutation p.G477R 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-D3-A51E-06 12 6804720 6804720 C T PIANP Missense_Mutation p.G235R 0.35 tolerated_low_confidence(0.15) probably_damaging(0.979) TCGA-D3-A51E-06 12 68595655 68595655 C T IL26 Nonsense_Mutation p.W162* 0.26 TCGA-D3-A51E-06 12 70149321 70149321 C T RAB3IP Missense_Mutation p.P61S 0.40 tolerated_low_confidence(0.17) possibly_damaging(0.827) TCGA-D3-A51E-06 12 78392163 78392163 G A NAV3 Missense_Mutation p.V263I 0.30 tolerated(0.19) benign(0.003) TCGA-D3-A51E-06 12 9085274 9085274 C T PHC1 Silent p.F407F 0.12 TCGA-D3-A51E-06 13 103339331 103339331 C T METTL21C Missense_Mutation p.G120D 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 13 103518694 103518694 C T BIVM-ERCC5 Missense_Mutation p.A1187V 0.35 deleterious(0) probably_damaging(0.971) TCGA-D3-A51E-06 13 32906562 32906562 G A BRCA2 Missense_Mutation p.R316K 0.42 tolerated(1) benign(0.004) TCGA-D3-A51E-06 13 41515124 41515124 C T ELF1 Missense_Mutation p.E397K 0.39 deleterious(0.01) benign(0.289) TCGA-D3-A51E-06 13 41515131 41515131 A T ELF1 Silent p.A394A 0.37 TCGA-D3-A51E-06 13 72134020 72134020 G A DACH1 Missense_Mutation p.P458L 0.58 possibly_damaging(0.748) TCGA-D3-A51E-06 13 72204727 72204727 C T DACH1 Missense_Mutation p.G365R 0.34 possibly_damaging(0.891) TCGA-D3-A51E-06 14 102028736 102028736 C T DIO3 Silent p.P301P 0.28 TCGA-D3-A51E-06 14 102843271 102843271 C T TECPR2 Silent p.N71N 0.32 TCGA-D3-A51E-06 14 103416169 103416169 G A CDC42BPB Silent p.L1128L 0.32 TCGA-D3-A51E-06 14 104640152 104640152 C T KIF26A Silent p.A659A 0.36 TCGA-D3-A51E-06 14 20389530 20389530 C T OR4K5 Silent p.I255I 0.22 TCGA-D3-A51E-06 14 20849176 20849176 G A TEP1 Missense_Mutation p.S1559L 0.41 tolerated(0.05) benign(0.058) TCGA-D3-A51E-06 14 23523425 23523425 C T CDH24 Silent p.L299L 0.49 TCGA-D3-A51E-06 14 24654438 24654438 G A IPO4 Silent p.H453H 0.32 TCGA-D3-A51E-06 14 31344159 31344159 G A COCH Nonsense_Mutation p.W5* 0.40 TCGA-D3-A51E-06 14 32560645 32560645 C T ARHGAP5 Missense_Mutation p.P257L 0.28 deleterious(0.01) benign(0.109) TCGA-D3-A51E-06 14 45644571 45644571 C T FANCM Missense_Mutation p.H872Y 0.24 tolerated(0.32) benign(0.001) TCGA-D3-A51E-06 14 50616844 50616850 GTGGACT - SOS2 Frame_Shift_Del p.S754Lfs*20 0.24 TCGA-D3-A51E-06 14 51204893 51204893 G A NIN Nonsense_Mutation p.Q1914* 0.43 TCGA-D3-A51E-06 14 57268478 57268478 G A OTX2 Missense_Mutation p.S290F 0.24 deleterious(0) possibly_damaging(0.498) TCGA-D3-A51E-06 14 64587767 64587767 C T SYNE2 Silent p.F4382F 0.24 TCGA-D3-A51E-06 14 72152321 72152321 C T SIPA1L1 Missense_Mutation p.S1116F 0.38 tolerated(0.09) possibly_damaging(0.459) TCGA-D3-A51E-06 14 90650488 90650488 G A KCNK13 Missense_Mutation p.G123E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 14 90770342 90770342 A G NRDE2 Silent p.F314F 0.34 TCGA-D3-A51E-06 14 96875192 96875192 G A AK7 Missense_Mutation p.E138K 0.30 tolerated(0.59) benign(0.022) TCGA-D3-A51E-06 15 101933623 101933623 G A PCSK6 Nonsense_Mutation p.Q334* 0.49 TCGA-D3-A51E-06 15 34102840 34102840 G A RYR3 Missense_Mutation p.R3396Q 0.37 possibly_damaging(0.684) TCGA-D3-A51E-06 15 40675068 40675068 G A KNSTRN Missense_Mutation p.R11K 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A51E-06 15 42003536 42003536 C T MGA Missense_Mutation p.L1025F 0.41 tolerated(0.05) probably_damaging(0.935) TCGA-D3-A51E-06 15 42116122 42116122 C T MAPKBP1 Missense_Mutation p.P1365L 0.37 tolerated(0.19) benign(0.011) TCGA-D3-A51E-06 15 45396351 45396351 C T DUOX2 Silent p.V849V 0.22 TCGA-D3-A51E-06 15 45556889 45556889 C T SLC28A2 Nonsense_Mutation p.Q209* 0.29 TCGA-D3-A51E-06 15 65495802 65495802 G A CILP Missense_Mutation p.P309L 0.27 tolerated(0.12) probably_damaging(1) TCGA-D3-A51E-06 15 72636416 72636416 G A HEXA 3'UTR 0.29 TCGA-D3-A51E-06 15 74043541 74043541 G A C15orf59 5'UTR 0.47 TCGA-D3-A51E-06 15 89400320 89400320 G A ACAN Missense_Mutation p.G1502R 0.33 tolerated(0.06) probably_damaging(1) TCGA-D3-A51E-06 15 91811798 91811799 AA G SV2B Frame_Shift_Del p.N446Vfs*10 0.30 TCGA-D3-A51E-06 15 98995080 98995080 G A FAM169B Missense_Mutation p.S115L 0.43 deleterious(0.03) benign(0) TCGA-D3-A51E-06 16 10567357 10567357 G A ATF7IP2 Missense_Mutation p.G483E 0.28 tolerated(0.49) benign(0.056) TCGA-D3-A51E-06 16 14970248 14970248 G T NOMO1 Missense_Mutation p.G797W 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 16 21078705 21078705 C T DNAH3 Silent p.Q1139Q 0.37 TCGA-D3-A51E-06 16 21771858 21771858 G A OTOA Nonsense_Mutation p.W1139* 0.41 TCGA-D3-A51E-06 16 53487495 53487495 C A RBL2 Missense_Mutation p.P300T 0.40 deleterious(0) probably_damaging(0.992) TCGA-D3-A51E-06 16 67315971 67315971 C T PLEKHG4 Silent p.I355I 0.26 TCGA-D3-A51E-06 16 67478535 67478535 A C ATP6V0D1 Missense_Mutation p.V126G 0.27 deleterious(0) possibly_damaging(0.633) TCGA-D3-A51E-06 16 70515000 70515000 C T COG4 Silent p.T761T 0.06 TCGA-D3-A51E-06 16 71571180 71571180 C T CHST4 Silent p.I200I 0.53 TCGA-D3-A51E-06 16 77387725 77387725 G A ADAMTS18 Missense_Mutation p.P507S 0.42 deleterious(0) possibly_damaging(0.768) TCGA-D3-A51E-06 16 9858266 9858266 G A GRIN2A Silent p.S1045S 0.30 TCGA-D3-A51E-06 17 10253931 10253931 C T MYH13 Silent p.G362G 0.30 TCGA-D3-A51E-06 17 10304997 10304997 C T MYH8 Missense_Mutation p.E932K 0.34 deleterious(0.01) benign(0.03) TCGA-D3-A51E-06 17 10426472 10426472 G A MYH2 Missense_Mutation p.L1870F 0.12 deleterious(0) probably_damaging(0.93) TCGA-D3-A51E-06 17 11772518 11772518 G T DNAH9 Missense_Mutation p.C3334F 0.38 probably_damaging(0.974) TCGA-D3-A51E-06 17 16852106 16852106 C T TNFRSF13B Missense_Mutation p.D131N 0.38 tolerated(0.21) possibly_damaging(0.859) TCGA-D3-A51E-06 17 19646583 19646583 T C ALDH3A1 Missense_Mutation p.N119S 0.41 tolerated(0.45) benign(0.009) TCGA-D3-A51E-06 17 27085398 27085398 G A FAM222B Nonsense_Mutation p.R527* 0.36 TCGA-D3-A51E-06 17 33586576 33586576 C A SLFN5 Silent p.L289L 0.43 TCGA-D3-A51E-06 17 33768044 33768044 T C SLFN13 Missense_Mutation p.N755S 0.41 tolerated(0.05) benign(0.104) TCGA-D3-A51E-06 17 36453135 36453135 C T MRPL45 5'UTR 0.25 TCGA-D3-A51E-06 17 39261837 39261837 G A KRTAP4-9 Missense_Mutation p.R66H 0.43 tolerated(0.12) unknown(0) TCGA-D3-A51E-06 17 39578598 39578598 C T KRT37 Missense_Mutation p.G274E 0.34 tolerated(0.77) benign(0.042) TCGA-D3-A51E-06 17 47210392 47210392 G A B4GALNT2 Missense_Mutation p.G2E 0.43 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-D3-A51E-06 17 5462668 5462668 G A NLRP1 Missense_Mutation p.P450S 0.27 deleterious(0.03) probably_damaging(0.98) TCGA-D3-A51E-06 17 60813988 60813988 C G MARCH10 Missense_Mutation p.G414A 0.30 tolerated(0.22) benign(0.155) TCGA-D3-A51E-06 17 61498504 61498504 C T TANC2 Nonsense_Mutation p.Q1721* 0.25 TCGA-D3-A51E-06 17 66247278 66247290 ACTCGTGGAATTT - AMZ2 Frame_Shift_Del p.D182Vfs*8 0.18 TCGA-D3-A51E-06 17 74006208 74006208 G A EVPL Silent p.P1026P 0.25 TCGA-D3-A51E-06 17 76823355 76823355 G A USP36 Nonsense_Mutation p.Q221* 0.33 TCGA-D3-A51E-06 17 77082220 77082220 C T ENGASE Missense_Mutation p.P674L 0.34 tolerated(0.07) benign(0.003) TCGA-D3-A51E-06 17 78325563 78325563 C T RNF213 Silent p.S3421S 0.26 TCGA-D3-A51E-06 17 80280114 80280114 C T SECTM1 Missense_Mutation p.V224M 0.32 deleterious_low_confidence(0.04) benign(0.146) TCGA-D3-A51E-06 17 8726743 8726743 C T PIK3R6 Missense_Mutation p.M529I 0.35 deleterious(0.03) benign(0.2) TCGA-D3-A51E-06 17 962063 962063 C T ABR Silent p.K409K 0.29 TCGA-D3-A51E-06 18 23807135 23807135 C T TAF4B Missense_Mutation p.P80S 0.68 tolerated(0.09) probably_damaging(0.993) TCGA-D3-A51E-06 18 24722825 24722825 T G CHST9 5'UTR 0.07 TCGA-D3-A51E-06 18 28672213 28672213 G A DSC2 Missense_Mutation p.P69S 0.61 tolerated(0.07) probably_damaging(0.964) TCGA-D3-A51E-06 18 50432657 50432657 G A DCC Missense_Mutation p.S219N 0.08 tolerated(0.1) benign(0.04) TCGA-D3-A51E-06 18 50734090 50734090 G A DCC Silent p.L588L 0.08 TCGA-D3-A51E-06 18 8784510 8784510 C T SOGA2 Missense_Mutation p.T467M 0.40 deleterious(0) probably_damaging(0.979) TCGA-D3-A51E-06 19 1058821 1058821 C A ABCA7 Missense_Mutation p.P1761H 0.31 deleterious(0.03) probably_damaging(0.935) TCGA-D3-A51E-06 19 17056471 17056471 C T CPAMD8 Missense_Mutation p.G941E 0.31 tolerated(0.51) benign(0.012) TCGA-D3-A51E-06 19 17370097 17370097 C T USHBP1 Splice_Site p.X349_splice 0.31 TCGA-D3-A51E-06 19 19744923 19744923 G A GMIP Missense_Mutation p.P721S 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-D3-A51E-06 19 23299917 23299917 G A ZNF730 5'UTR 0.42 TCGA-D3-A51E-06 19 3785146 3785146 G A MATK Intron 0.32 TCGA-D3-A51E-06 19 37904217 37904217 A G ZNF569 Missense_Mutation p.I448T 0.33 tolerated(0.86) probably_damaging(0.997) TCGA-D3-A51E-06 19 38910609 38910609 G A RASGRP4 Missense_Mutation p.P185L 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A51E-06 19 39361342 39361342 G A RINL Missense_Mutation p.P298S 0.45 tolerated(0.16) possibly_damaging(0.798) TCGA-D3-A51E-06 19 39361343 39361343 G A RINL Silent p.D297D 0.47 TCGA-D3-A51E-06 19 43689216 43689216 C T PSG5 Missense_Mutation p.D50N 0.24 tolerated(0.1) probably_damaging(0.975) TCGA-D3-A51E-06 19 45293285 45293285 C T CBLC Silent p.T314T 0.34 TCGA-D3-A51E-06 19 49658569 49658569 G T HRC 5'UTR 0.30 TCGA-D3-A51E-06 19 51506165 51506165 C T KLK9 3'UTR 0.50 TCGA-D3-A51E-06 19 52033150 52033150 G A SIGLEC6 Silent p.P280P 0.23 TCGA-D3-A51E-06 19 56307512 56307512 C T NLRP11 Missense_Mutation p.R759K 0.40 tolerated(1) benign(0.001) TCGA-D3-A51E-06 19 56467279 56467279 G A NLRP8 Missense_Mutation p.E619K 0.22 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A51E-06 19 58290772 58290772 C T ZNF586 Nonsense_Mutation p.R273* 0.39 TCGA-D3-A51E-06 19 6312292 6312292 G A ACER1 Missense_Mutation p.S73F 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 19 6496064 6496064 G A TUBB4A Missense_Mutation p.T149M 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A51E-06 19 9074964 9074964 G A MUC16 Missense_Mutation p.S4161F 0.30 unknown(0) TCGA-D3-A51E-06 1 101197031 101197031 C T VCAM1 Silent p.F494F 0.43 TCGA-D3-A51E-06 1 11008739 11008739 C A C1orf127 Nonsense_Mutation p.E485* 0.48 TCGA-D3-A51E-06 1 11008740 11008740 C T C1orf127 Silent p.S484S 0.47 TCGA-D3-A51E-06 1 112318760 112318760 G C KCND3 Missense_Mutation p.P636R 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.804) TCGA-D3-A51E-06 1 112318761 112318761 G T KCND3 Missense_Mutation p.P636T 0.31 tolerated_low_confidence(0.28) possibly_damaging(0.641) TCGA-D3-A51E-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.64 tolerated(0.06) benign(0.006) TCGA-D3-A51E-06 1 11594532 11594532 G A PTCHD2 Missense_Mutation p.G1157D 0.35 tolerated(0.34) benign(0.001) TCGA-D3-A51E-06 1 120468308 120468308 G A NOTCH2 Silent p.G1377G 0.65 TCGA-D3-A51E-06 1 12907871 12907871 T C HNRNPCL1 Missense_Mutation p.N91S 0.12 tolerated(0.13) benign(0.002) TCGA-D3-A51E-06 1 13743091 13743091 C T PRAMEF20 Missense_Mutation p.R94C 0.50 tolerated(0.07) benign(0.011) TCGA-D3-A51E-06 1 152278967 152278967 C T FLG Missense_Mutation p.G2799R 0.21 benign(0.008) TCGA-D3-A51E-06 1 152383101 152383101 G A CRNN Nonsense_Mutation p.Q153* 0.55 TCGA-D3-A51E-06 1 154474155 154474155 C T SHE Silent p.A116A 0.21 TCGA-D3-A51E-06 1 155261669 155261669 G A PKLR Missense_Mutation p.S499F 0.25 tolerated(0.11) benign(0.094) TCGA-D3-A51E-06 1 156708369 156708369 G A MRPL24 Missense_Mutation p.P43L 0.57 tolerated(0.2) benign(0.021) TCGA-D3-A51E-06 1 156708370 156708370 G A MRPL24 Missense_Mutation p.P43S 0.57 tolerated(0.16) benign(0.003) TCGA-D3-A51E-06 1 157514167 157514167 C T FCRL5 Silent p.P243P 0.53 TCGA-D3-A51E-06 1 158548823 158548823 G A OR10X1 Silent p.V289V 0.33 TCGA-D3-A51E-06 1 158576822 158576822 G A OR10Z1 Silent p.R198R 0.40 TCGA-D3-A51E-06 1 158617384 158617384 G A SPTA1 Missense_Mutation p.R1281C 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 1 159858154 159858154 C T CCDC19 Silent p.K135K 0.23 TCGA-D3-A51E-06 1 16200876 16200876 C T SPEN Intron 0.26 TCGA-D3-A51E-06 1 170695524 170695524 G A PRRX1 Missense_Mutation p.G194E 0.32 tolerated(0.45) possibly_damaging(0.888) TCGA-D3-A51E-06 1 18014233 18014233 C T ARHGEF10L Missense_Mutation p.L1059F 0.33 tolerated(0.08) benign(0.03) TCGA-D3-A51E-06 1 193149577 193149577 C T B3GALT2 Silent p.S372S 0.45 TCGA-D3-A51E-06 1 22927228 22927228 G T EPHA8 Silent p.V821V 0.29 TCGA-D3-A51E-06 1 234041335 234041335 C T SLC35F3 Silent p.L38L 0.19 TCGA-D3-A51E-06 1 248652087 248652087 C T OR2T5 Silent p.F66F 0.13 TCGA-D3-A51E-06 1 248722595 248722595 G A OR2T29 Silent p.F66F 0.11 TCGA-D3-A51E-06 1 27212479 27212479 G A GPN2 Silent p.I238I 0.34 TCGA-D3-A51E-06 1 2939031 2939031 G A ACTRT2 Missense_Mutation p.E261K 0.39 deleterious(0) probably_damaging(0.974) TCGA-D3-A51E-06 1 29647298 29647298 C T PTPRU Silent p.I1273I 0.39 TCGA-D3-A51E-06 1 34276407 34276407 G A CSMD2 Silent p.F421F 0.41 TCGA-D3-A51E-06 1 54417912 54417912 G A LRRC42 Silent p.G80G 0.35 TCGA-D3-A51E-06 1 54606840 54606840 C T CDCP2 Missense_Mutation p.E232K 0.32 tolerated(0.21) possibly_damaging(0.701) TCGA-D3-A51E-06 1 64515471 64515471 G A ROR1 Nonsense_Mutation p.W91* 0.42 TCGA-D3-A51E-06 1 92456771 92456771 C T BRDT Missense_Mutation p.P678L 0.42 tolerated(0.19) benign(0.001) TCGA-D3-A51E-06 20 10624442 10624442 C T JAG1 Silent p.G814G 0.16 TCGA-D3-A51E-06 20 25439179 25439179 G A NINL Intron 0.55 TCGA-D3-A51E-06 20 30671796 30671796 C T HCK Missense_Mutation p.S211F 0.29 deleterious(0) possibly_damaging(0.709) TCGA-D3-A51E-06 20 35155350 35155350 G A DLGAP4 Silent p.R962R 0.46 TCGA-D3-A51E-06 20 41306778 41306778 G A PTPRT Missense_Mutation p.P294L 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 20 54824280 54824280 C T MC3R Silent p.S127S 0.31 TCGA-D3-A51E-06 20 5903688 5903688 C T CHGB Missense_Mutation p.P300S 0.26 tolerated(0.38) possibly_damaging(0.834) TCGA-D3-A51E-06 20 853486 853486 G A ANGPT4 3'UTR 0.57 TCGA-D3-A51E-06 20 9523275 9523275 C T PAK7 Silent p.R654R 0.34 TCGA-D3-A51E-06 21 11098866 11098866 C T BAGE2 RNA 0.24 TCGA-D3-A51E-06 21 41301012 41301012 G A PCP4 Silent p.K55K 0.39 TCGA-D3-A51E-06 21 41668062 41668062 C T DSCAM Missense_Mutation p.G701E 0.35 deleterious(0.01) probably_damaging(0.939) TCGA-D3-A51E-06 21 46363728 46363728 C T FAM207A Missense_Mutation p.R87W 0.37 deleterious(0) possibly_damaging(0.835) TCGA-D3-A51E-06 21 47831458 47831458 T A PCNT Missense_Mutation p.L1824H 0.34 probably_damaging(0.926) TCGA-D3-A51E-06 22 18022077 18022077 C T CECR2 Missense_Mutation p.P728S 0.16 tolerated_low_confidence(0.13) benign(0.024) TCGA-D3-A51E-06 22 20129011 20129011 C T ZDHHC8 Silent p.F361F 0.38 TCGA-D3-A51E-06 22 20129012 20129012 C T ZDHHC8 Missense_Mutation p.P362S 0.38 tolerated(1) benign(0.001) TCGA-D3-A51E-06 22 22039122 22039122 T A PPIL2 Missense_Mutation p.Y212N 0.50 tolerated(0.49) benign(0.2) TCGA-D3-A51E-06 22 23523952 23523952 C T BCR Missense_Mutation p.P269S 0.25 tolerated_low_confidence(0.24) benign(0) TCGA-D3-A51E-06 22 25270422 25270422 G A SGSM1 Silent p.V444V 0.45 TCGA-D3-A51E-06 22 26165018 26165018 C T MYO18B Missense_Mutation p.R379W 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.599) TCGA-D3-A51E-06 22 36537307 36537307 C T APOL3 Missense_Mutation p.E384K 0.30 tolerated(0.74) benign(0.048) TCGA-D3-A51E-06 22 40283651 40283651 A C ENTHD1 Missense_Mutation p.S34R 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 2 102314969 102314969 T G MAP4K4 Missense_Mutation p.V31G 0.05 deleterious_low_confidence(0) unknown(0) TCGA-D3-A51E-06 2 102958733 102958733 G A IL1RL1 Missense_Mutation p.E221K 0.23 tolerated(0.21) benign(0.081) TCGA-D3-A51E-06 2 119739007 119739007 G A MARCO Missense_Mutation p.M263I 0.48 tolerated(0.19) benign(0.086) TCGA-D3-A51E-06 2 130832977 130832977 G A POTEF Missense_Mutation p.L690F 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A51E-06 2 131520647 131520647 G A AMER3 Silent p.G334G 0.41 TCGA-D3-A51E-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.32 deleterious(0.02) unknown(0) TCGA-D3-A51E-06 2 152534436 152534436 G A NEB Missense_Mutation p.A1174V 0.38 probably_damaging(0.994) TCGA-D3-A51E-06 2 152582002 152582002 G A NEB Missense_Mutation p.R123C 0.38 probably_damaging(0.975) TCGA-D3-A51E-06 2 160032985 160032985 C T TANC1 Missense_Mutation p.P620S 0.41 deleterious(0) probably_damaging(0.928) TCGA-D3-A51E-06 2 164466470 164466470 G A FIGN Silent p.I624I 0.25 TCGA-D3-A51E-06 2 168099105 168099105 C T XIRP2 Silent p.F401F 0.28 TCGA-D3-A51E-06 2 168102534 168102534 G A XIRP2 Silent p.K1544K 0.34 TCGA-D3-A51E-06 2 171376042 171376042 G A MYO3B Silent p.E1189E 0.41 TCGA-D3-A51E-06 2 179605605 179605605 C T TTN Missense_Mutation p.E4119K 0.29 TCGA-D3-A51E-06 2 179641147 179641147 C T TTN Missense_Mutation p.R1815K 0.36 TCGA-D3-A51E-06 2 182542351 182542351 C T NEUROD1 3'UTR 0.38 TCGA-D3-A51E-06 2 189933585 189933585 C T COL5A2 Missense_Mutation p.R395Q 0.38 probably_damaging(0.957) TCGA-D3-A51E-06 2 190439984 190439984 G A SLC40A1 Silent p.L58L 0.33 TCGA-D3-A51E-06 2 191934455 191934455 C T STAT4 Missense_Mutation p.E170K 0.36 deleterious(0.01) possibly_damaging(0.492) TCGA-D3-A51E-06 2 21225556 21225556 G A APOB Silent p.F4246F 0.33 TCGA-D3-A51E-06 2 219757510 219757510 C T WNT10A Silent p.N257N 0.15 TCGA-D3-A51E-06 2 220342491 220342491 C T SPEG Missense_Mutation p.H1604Y 0.26 possibly_damaging(0.799) TCGA-D3-A51E-06 2 228882591 228882591 C T SPHKAP Silent p.R993R 0.39 TCGA-D3-A51E-06 2 229890383 229890383 C T PID1 Missense_Mutation p.E238K 0.44 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A51E-06 2 234869681 234869681 G A TRPM8 Missense_Mutation p.G542S 0.25 tolerated(1) benign(0) TCGA-D3-A51E-06 2 237489159 237489159 C T ACKR3 Silent p.I17I 0.34 TCGA-D3-A51E-06 2 241075731 241075731 C T MYEOV2 Missense_Mutation p.E12K 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-D3-A51E-06 2 242716379 242716379 C T GAL3ST2 Silent p.S3S 0.32 TCGA-D3-A51E-06 2 25994344 25994344 G A ASXL2 Missense_Mutation p.P157S 0.39 tolerated(0.48) benign(0.081) TCGA-D3-A51E-06 2 47378548 47378548 G A C2orf61 Missense_Mutation p.P83L 0.40 tolerated(0.46) benign(0.009) TCGA-D3-A51E-06 2 68607561 68607561 C T PLEK Silent p.I48I 0.22 TCGA-D3-A51E-06 2 74589839 74589839 C T DCTN1 Missense_Mutation p.A1183T 0.19 tolerated(0.41) benign(0.11) TCGA-D3-A51E-06 2 99217196 99217196 T C COA5 3'UTR 0.45 TCGA-D3-A51E-06 3 107096588 107096588 G A CCDC54 Missense_Mutation p.D52N 0.39 tolerated(0.28) benign(0.039) TCGA-D3-A51E-06 3 108129437 108129437 G A MYH15 Silent p.N1516N 0.40 TCGA-D3-A51E-06 3 121340573 121340573 G A FBXO40 Nonsense_Mutation p.W99* 0.37 TCGA-D3-A51E-06 3 140978999 140978999 G A ACPL2 5'UTR 0.29 TCGA-D3-A51E-06 3 167525048 167525048 G A SERPINI1 Missense_Mutation p.E300K 0.21 tolerated(1) benign(0.009) TCGA-D3-A51E-06 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.23 tolerated(0.6) benign(0.016) TCGA-D3-A51E-06 3 188956652 188956652 C T TPRG1 Missense_Mutation p.R145C 0.37 deleterious(0.03) benign(0.04) TCGA-D3-A51E-06 3 193120438 193120438 C T ATP13A4 3'UTR 0.24 TCGA-D3-A51E-06 3 2613203 2613203 G A CNTN4 Missense_Mutation p.E6K 0.27 tolerated(1) benign(0.002) TCGA-D3-A51E-06 3 46580620 46580620 G A LRRC2 Silent p.I135I 0.33 TCGA-D3-A51E-06 3 48475220 48475220 A G CCDC51 Missense_Mutation p.V125A 0.38 tolerated(1) benign(0.001) TCGA-D3-A51E-06 3 48572950 48572950 C T PFKFB4 Missense_Mutation p.D328N 0.42 probably_damaging(0.933) TCGA-D3-A51E-06 3 51251604 51251604 G A DOCK3 Missense_Mutation p.R393K 0.55 tolerated(0.28) probably_damaging(0.986) TCGA-D3-A51E-06 3 67058388 67058388 G A KBTBD8 Missense_Mutation p.G462D 0.36 tolerated(0.52) benign(0.045) TCGA-D3-A51E-06 3 68587958 68587958 G A FAM19A1 Missense_Mutation p.G104E 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A51E-06 4 145035897 145035897 A T GYPA Silent p.P127P 0.35 TCGA-D3-A51E-06 4 156757976 156757976 C T ASIC5 Missense_Mutation p.G367E 0.36 deleterious(0) probably_damaging(0.928) TCGA-D3-A51E-06 4 156850828 156850828 A T CTSO Missense_Mutation p.L235H 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 4 187195463 187195463 G A F11 Intron 0.22 TCGA-D3-A51E-06 4 40895286 40895286 C A APBB2 Missense_Mutation p.G466V 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 4 40895287 40895287 C T APBB2 Missense_Mutation p.G466R 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 4 41016023 41016023 T C APBB2 Missense_Mutation p.K138E 0.34 tolerated(0.39) benign(0.005) TCGA-D3-A51E-06 4 79429941 79429941 G A FRAS1 Silent p.K3187K 0.36 TCGA-D3-A51E-06 4 94411887 94411887 C T GRID2 Silent p.L652L 0.32 TCGA-D3-A51E-06 4 95575610 95575610 G A PDLIM5 Splice_Site p.X457_splice 0.38 TCGA-D3-A51E-06 4 9784956 9784956 G A DRD5 Missense_Mutation p.D435N 0.32 tolerated(0.09) benign(0.409) TCGA-D3-A51E-06 4 99579420 99579420 G A TSPAN5 5'UTR 0.35 TCGA-D3-A51E-06 4 99579421 99579421 G A TSPAN5 5'UTR 0.33 TCGA-D3-A51E-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.37 tolerated(0.09) possibly_damaging(0.574) TCGA-D3-A51E-06 5 134126191 134126191 T G DDX46 Nonsense_Mutation p.Y525* 0.48 TCGA-D3-A51E-06 5 140214286 140214286 G A PCDHA7 Silent p.L106L 0.16 TCGA-D3-A51E-06 5 140222316 140222316 G A PCDHA8 Silent p.P470P 0.78 TCGA-D3-A51E-06 5 140228398 140228398 G A PCDHA9 Silent p.L106L 0.53 TCGA-D3-A51E-06 5 140248703 140248703 G A PCDHA11 Silent p.Q5Q 0.40 TCGA-D3-A51E-06 5 140529832 140529832 A C PCDHB6 5'Flank 0.25 TCGA-D3-A51E-06 5 140581283 140581283 G A PCDHB11 Missense_Mutation p.D646N 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-D3-A51E-06 5 141059843 141059843 G A ARAP3 Silent p.L71L 0.21 TCGA-D3-A51E-06 5 141059844 141059844 G A ARAP3 Silent p.S70S 0.22 TCGA-D3-A51E-06 5 142586826 142586826 C T ARHGAP26 Silent p.S684S 0.38 TCGA-D3-A51E-06 5 145393349 145393349 G A SH3RF2 Missense_Mutation p.G262S 0.25 tolerated(1) benign(0.021) TCGA-D3-A51E-06 5 145638024 145638024 T G RBM27 Missense_Mutation p.V536G 0.38 deleterious(0.04) possibly_damaging(0.821) TCGA-D3-A51E-06 5 149630366 149630366 G A CAMK2A Missense_Mutation p.S234L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A51E-06 5 161324264 161324264 G A GABRA1 Missense_Mutation p.E403K 0.25 tolerated(0.19) benign(0.002) TCGA-D3-A51E-06 5 24511522 24511522 A T CDH10 Missense_Mutation p.Y306N 0.40 deleterious(0) possibly_damaging(0.866) TCGA-D3-A51E-06 5 35065177 35065177 C T PRLR 3'UTR 0.37 TCGA-D3-A51E-06 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.26 TCGA-D3-A51E-06 5 63803625 63803625 C T RGS7BP Missense_Mutation p.R85W 0.34 deleterious(0) possibly_damaging(0.835) TCGA-D3-A51E-06 5 71756137 71756137 G A ZNF366 Missense_Mutation p.S396F 0.43 deleterious(0.01) possibly_damaging(0.841) TCGA-D3-A51E-06 5 78077709 78077709 T C ARSB Silent p.R434R 0.38 TCGA-D3-A51E-06 5 79855005 79855005 G A ANKRD34B Silent p.S278S 0.36 TCGA-D3-A51E-06 5 89923417 89923417 T C GPR98 Silent p.I354I 0.42 TCGA-D3-A51E-06 5 98208136 98208136 G A CHD1 Missense_Mutation p.P1232L 0.37 deleterious(0.02) benign(0.109) TCGA-D3-A51E-06 6 100838895 100838895 C T SIM1 Missense_Mutation p.R548Q 0.63 deleterious_low_confidence(0.02) probably_damaging(0.928) TCGA-D3-A51E-06 6 110536529 110536529 T C CDC40 Missense_Mutation p.F328S 0.54 deleterious(0) probably_damaging(0.917) TCGA-D3-A51E-06 6 116758425 116758425 C T DSE Nonsense_Mutation p.Q932* 0.52 TCGA-D3-A51E-06 6 152708309 152708309 C T SYNE1 Silent p.A2795A 0.54 TCGA-D3-A51E-06 6 26405760 26405760 C T BTN3A1 5'UTR 0.15 TCGA-D3-A51E-06 6 29142232 29142232 T C OR2J2 Missense_Mutation p.F274L 0.25 deleterious(0.05) possibly_damaging(0.461) TCGA-D3-A51E-06 6 31996586 31996586 C T C4B Missense_Mutation p.S1116L 0.23 deleterious(0) probably_damaging(0.916) TCGA-D3-A51E-06 6 33630347 33630347 C T ITPR3 Silent p.L252L 0.31 TCGA-D3-A51E-06 6 36464552 36464552 G A STK38 Silent p.I401I 0.10 TCGA-D3-A51E-06 6 41021143 41021143 G A APOBEC2 Silent p.E19E 0.65 TCGA-D3-A51E-06 6 41029549 41029549 G T APOBEC2 Missense_Mutation p.W205L 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 6 46821697 46821697 C T GPR116 3'UTR 0.28 TCGA-D3-A51E-06 6 52054186 52054186 C T IL17A 3'UTR 0.22 TCGA-D3-A51E-06 6 70917015 70917015 C T COL19A1 3'UTR 0.20 TCGA-D3-A51E-06 6 71235360 71235360 C T FAM135A Missense_Mutation p.S858F 0.23 deleterious(0.04) benign(0.005) TCGA-D3-A51E-06 6 73951145 73951145 C T KHDC1 3'UTR 0.43 TCGA-D3-A51E-06 6 76744460 76744460 G A IMPG1 Missense_Mutation p.R116C 0.60 deleterious(0) probably_damaging(0.921) TCGA-D3-A51E-06 6 85448270 85448270 C T TBX18 Nonsense_Mutation p.W348* 0.58 TCGA-D3-A51E-06 6 90577400 90577400 C T CASP8AP2 RNA 0.79 TCGA-D3-A51E-06 7 100193315 100193315 G A FBXO24 Missense_Mutation p.G436R 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A51E-06 7 100193316 100193316 G A FBXO24 Missense_Mutation p.G436E 0.26 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A51E-06 7 107013044 107013044 C T COG5 Silent p.V308V 0.31 TCGA-D3-A51E-06 7 107671362 107671362 C T LAMB4 Silent p.L1627L 0.27 TCGA-D3-A51E-06 7 111927132 111927132 A G ZNF277 Intron 0.33 TCGA-D3-A51E-06 7 122765670 122765670 A G SLC13A1 Missense_Mutation p.L398P 0.26 deleterious(0.03) probably_damaging(0.925) TCGA-D3-A51E-06 7 123599542 123599542 C A SPAM1 Missense_Mutation p.S350Y 0.19 deleterious(0.03) benign(0.366) TCGA-D3-A51E-06 7 12728578 12728578 T C ARL4A 3'UTR 0.29 TCGA-D3-A51E-06 7 128097400 128097400 C T HILPDA Silent p.S26S 0.25 TCGA-D3-A51E-06 7 135390924 135390924 C T SLC13A4 Missense_Mutation p.E164K 0.30 tolerated(0.07) benign(0.296) TCGA-D3-A51E-06 7 136700666 136700666 C T CHRM2 Nonsense_Mutation p.Q352* 0.29 TCGA-D3-A51E-06 7 141464126 141464126 C T TAS2R3 Silent p.I56I 0.25 TCGA-D3-A51E-06 7 141730243 141730243 G A MGAM Missense_Mutation p.E435K 0.24 tolerated(0.08) benign(0.228) TCGA-D3-A51E-06 7 143827123 143827123 G A OR2A14 Silent p.K306K 0.29 TCGA-D3-A51E-06 7 150324855 150324855 C T GIMAP6 Silent p.K277K 0.27 TCGA-D3-A51E-06 7 156451241 156451241 A G RNF32 Missense_Mutation p.R221G 0.19 deleterious(0) probably_damaging(0.996) TCGA-D3-A51E-06 7 158828698 158828698 G A VIPR2 Missense_Mutation p.P252S 0.24 deleterious(0.02) possibly_damaging(0.541) TCGA-D3-A51E-06 7 20199629 20199629 C T MACC1 Missense_Mutation p.E119K 0.29 deleterious(0.05) possibly_damaging(0.457) TCGA-D3-A51E-06 7 21856244 21856244 C T DNAH11 Missense_Mutation p.P3505S 0.36 possibly_damaging(0.779) TCGA-D3-A51E-06 7 30008609 30008609 C T SCRN1 Silent p.G45G 0.30 TCGA-D3-A51E-06 7 31918648 31918648 C T PDE1C Missense_Mutation p.S189N 0.32 deleterious(0) benign(0.4) TCGA-D3-A51E-06 7 43495939 43495939 G A HECW1 Silent p.V848V 0.43 TCGA-D3-A51E-06 7 45145083 45145083 A G TBRG4 Missense_Mutation p.V231A 0.30 tolerated(0.73) benign(0.008) TCGA-D3-A51E-06 7 48634373 48634373 T A ABCA13 Missense_Mutation p.V4903D 0.33 probably_damaging(0.955) TCGA-D3-A51E-06 7 82595241 82595241 C T PCLO Missense_Mutation p.G1288E 0.33 unknown(0) TCGA-D3-A51E-06 7 87760750 87760750 C T ADAM22 Missense_Mutation p.S331L 0.39 deleterious(0.01) possibly_damaging(0.798) TCGA-D3-A51E-06 7 87912104 87912104 A C STEAP4 Missense_Mutation p.F279C 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A51E-06 7 98254243 98254243 C T NPTX2 Missense_Mutation p.A218V 0.32 tolerated(0.16) benign(0.197) TCGA-D3-A51E-06 8 105509332 105509332 T C LRP12 Missense_Mutation p.E483G 0.21 deleterious(0.05) possibly_damaging(0.816) TCGA-D3-A51E-06 8 125058038 125058044 AACCAGA - FER1L6 Frame_Shift_Del p.N874Cfs*13 0.18 TCGA-D3-A51E-06 8 133141843 133141843 G A KCNQ3 Missense_Mutation p.S762F 0.50 deleterious(0.01) benign(0.044) TCGA-D3-A51E-06 8 134237731 134237731 C T WISP1 Missense_Mutation p.R237W 0.58 deleterious(0) probably_damaging(1) TCGA-D3-A51E-06 8 139155261 139155261 C T FAM135B Missense_Mutation p.R1211Q 0.25 deleterious(0) probably_damaging(0.909) TCGA-D3-A51E-06 8 139164562 139164562 C T FAM135B Missense_Mutation p.R719Q 0.49 tolerated(0.1) benign(0.025) TCGA-D3-A51E-06 8 144945600 144945600 C T EPPK1 Missense_Mutation p.G608S 0.26 probably_damaging(1) TCGA-D3-A51E-06 8 19805727 19805727 C T LPL Missense_Mutation p.A42V 0.58 deleterious(0.03) benign(0.021) TCGA-D3-A51E-06 8 27457480 27457480 G A CLU Silent p.L327L 0.55 TCGA-D3-A51E-06 8 3072044 3072044 C T CSMD1 Nonsense_Mutation p.W1614* 0.38 TCGA-D3-A51E-06 8 55539861 55539861 G A RP1 Missense_Mutation p.G1140E 0.45 tolerated(0.68) benign(0.352) TCGA-D3-A51E-06 9 125551211 125551211 G A OR5C1 5'UTR 0.27 TCGA-D3-A51E-06 9 23762156 23762156 G A ELAVL2 Missense_Mutation p.S26L 0.54 tolerated_low_confidence(0.08) benign(0.018) TCGA-D3-A51E-06 9 79469075 79469075 G A PRUNE2 Missense_Mutation p.S29L 0.24 deleterious(0.01) possibly_damaging(0.755) TCGA-D3-A51E-06 9 97365629 97365629 G A FBP1 3'UTR 0.25 TCGA-D3-A51E-06 X 131212840 131212840 G A FRMD7 Missense_Mutation p.P402L 0.54 tolerated(0.1) benign(0.003) TCGA-D3-A51E-06 X 153070593 153070593 C A PDZD4 Nonsense_Mutation p.E241* 0.53 TCGA-D3-A51E-06 X 153128167 153128167 T C L1CAM Missense_Mutation p.D1242G 0.55 tolerated(0.07) probably_damaging(0.953) TCGA-D3-A51E-06 X 50377764 50377764 G A SHROOM4 Missense_Mutation p.P437S 0.70 tolerated(0.22) benign(0.011) TCGA-D3-A51E-06 X 54492241 54492241 G A FGD1 Missense_Mutation p.P462L 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A51F-06 10 101993104 101993104 G A CWF19L1 Silent p.I499I 0.07 TCGA-D3-A51F-06 10 23326306 23326306 G A ARMC3 Silent p.G839G 0.08 TCGA-D3-A51F-06 10 23326307 23326307 G A ARMC3 Missense_Mutation p.G840S 0.08 tolerated(0.81) benign(0.014) TCGA-D3-A51F-06 10 95719536 95719536 C T PIPSL RNA 0.14 TCGA-D3-A51F-06 11 102662225 102662225 C T MMP1 Silent p.G345G 0.05 TCGA-D3-A51F-06 11 102662226 102662226 C T MMP1 Missense_Mutation p.G345E 0.05 tolerated(0.12) probably_damaging(0.992) TCGA-D3-A51F-06 11 18745763 18745763 C T IGSF22 Silent p.R7R 0.09 TCGA-D3-A51F-06 11 18745764 18745764 C T IGSF22 Missense_Mutation p.R7Q 0.06 tolerated_low_confidence(0.54) benign(0) TCGA-D3-A51F-06 11 61295562 61295562 C T SYT7 Silent p.E224E 0.06 TCGA-D3-A51F-06 11 8119365 8119365 G A TUB Silent p.G385G 0.06 TCGA-D3-A51F-06 12 129558903 129558903 C T TMEM132D Silent p.V939V 0.07 TCGA-D3-A51F-06 12 130892297 130892297 C G RIMBP2 Missense_Mutation p.E967Q 0.06 deleterious(0) probably_damaging(0.981) TCGA-D3-A51F-06 12 46591520 46591520 C T SLC38A1 Missense_Mutation p.G449R 0.09 deleterious(0.02) benign(0.153) TCGA-D3-A51F-06 12 52709810 52709810 C T KRT83 Missense_Mutation p.E377K 0.09 deleterious(0) probably_damaging(0.973) TCGA-D3-A51F-06 12 57579531 57579531 C T LRP1 Silent p.F2227F 0.12 TCGA-D3-A51F-06 12 7843022 7843022 G A GDF3 Silent p.L183L 0.08 TCGA-D3-A51F-06 13 101712206 101712206 C T NALCN Silent p.T1623T 0.10 TCGA-D3-A51F-06 13 102105228 102105228 C T ITGBL1 Missense_Mutation p.S15F 0.09 tolerated_low_confidence(0.28) benign(0.067) TCGA-D3-A51F-06 13 109792668 109792668 C T MYO16 Missense_Mutation p.P1348S 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 13 109792669 109792669 C T MYO16 Missense_Mutation p.P1348L 0.09 deleterious(0.03) probably_damaging(1) TCGA-D3-A51F-06 13 25744177 25744177 G A AMER2 Silent p.S527S 0.10 TCGA-D3-A51F-06 14 107113854 107113854 C T IGHV3-64 Missense_Mutation p.A81T 0.06 tolerated_low_confidence(0.09) benign(0.109) TCGA-D3-A51F-06 14 22670518 22670518 T A TRAV26-2 Splice_Site p.X14_splice 0.27 TCGA-D3-A51F-06 14 23938904 23938904 G A NGDN 5'UTR 0.07 TCGA-D3-A51F-06 14 29237739 29237739 C T FOXG1 Silent p.F418F 0.12 TCGA-D3-A51F-06 14 64468786 64468786 A T SYNE2 Missense_Mutation p.Y1258F 0.07 possibly_damaging(0.7) TCGA-D3-A51F-06 14 64468788 64468788 C T SYNE2 Nonsense_Mutation p.Q1259* 0.06 TCGA-D3-A51F-06 14 68047686 68047686 C T PLEKHH1 Missense_Mutation p.A1072V 0.10 tolerated(0.05) benign(0.04) TCGA-D3-A51F-06 14 86087927 86087927 C T FLRT2 Silent p.S23S 0.06 TCGA-D3-A51F-06 15 25460742 25460742 C T SNORD115-25 RNA 0.06 TCGA-D3-A51F-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.11 tolerated(0.08) probably_damaging(0.913) TCGA-D3-A51F-06 15 85661061 85661061 G A PDE8A Silent p.E575E 0.08 TCGA-D3-A51F-06 16 11114060 11114060 G A CLEC16A Missense_Mutation p.M438I 0.12 tolerated(0.1) possibly_damaging(0.771) TCGA-D3-A51F-06 16 14234440 14234440 C T MKL2 5'UTR 0.07 TCGA-D3-A51F-06 16 1818353 1818353 C T MAPK8IP3 Missense_Mutation p.A1238V 0.11 deleterious(0) probably_damaging(0.953) TCGA-D3-A51F-06 16 1827773 1827773 G A SPSB3 Silent p.T232T 0.12 TCGA-D3-A51F-06 16 22268203 22268203 C T EEF2K Silent p.I251I 0.06 TCGA-D3-A51F-06 16 23646880 23646880 T C PALB2 Silent p.L329L 0.06 TCGA-D3-A51F-06 16 3115784 3115784 G T IL32 Splice_Site 0.06 TCGA-D3-A51F-06 16 31475729 31475729 C T ARMC5 Missense_Mutation p.S462F 0.11 deleterious(0) probably_damaging(0.943) TCGA-D3-A51F-06 16 31475730 31475730 C T ARMC5 Silent p.S462S 0.11 TCGA-D3-A51F-06 16 337120 337120 C T PDIA2 3'UTR 0.10 TCGA-D3-A51F-06 16 57056174 57056174 C T NLRC5 Missense_Mutation p.T101I 0.20 deleterious(0.03) benign(0.05) TCGA-D3-A51F-06 16 67304821 67304821 G A SLC9A5 Missense_Mutation p.S800N 0.06 tolerated_low_confidence(0.06) possibly_damaging(0.702) TCGA-D3-A51F-06 16 69965788 69965788 C T WWP2 Silent p.I559I 0.07 TCGA-D3-A51F-06 16 8996035 8996035 G A USP7 Missense_Mutation p.L651F 0.07 tolerated(0.12) benign(0.158) TCGA-D3-A51F-06 17 10419603 10419603 C T MYH1 Silent p.K87K 0.05 TCGA-D3-A51F-06 17 27240046 27240046 G A PHF12 Missense_Mutation p.P515S 0.06 tolerated(0.15) benign(0.002) TCGA-D3-A51F-06 17 30530924 30530924 C T RHOT1 Missense_Mutation p.R450C 0.10 tolerated(0.05) possibly_damaging(0.707) TCGA-D3-A51F-06 17 3494394 3494394 C T SHPK Silent p.K156K 0.12 TCGA-D3-A51F-06 17 42427920 42427920 C T GRN Silent p.L191L 0.06 TCGA-D3-A51F-06 17 47388699 47388699 G A ZNF652 Silent p.F428F 0.05 TCGA-D3-A51F-06 17 5042803 5042803 T C USP6 Silent p.G444G 0.13 TCGA-D3-A51F-06 17 59024580 59024580 G A BCAS3 Missense_Mutation p.G363E 0.08 deleterious(0) possibly_damaging(0.809) TCGA-D3-A51F-06 17 59946488 59946488 G A INTS2 Nonsense_Mutation p.Q1059* 0.11 TCGA-D3-A51F-06 17 66041910 66041910 C T KPNA2 Missense_Mutation p.T457I 0.09 tolerated(0.12) benign(0.011) TCGA-D3-A51F-06 17 73726977 73726977 G A ITGB4 Missense_Mutation p.V342I 0.06 tolerated(0.89) possibly_damaging(0.719) TCGA-D3-A51F-06 18 28586912 28586912 G A DSC3 Missense_Mutation p.P617S 0.12 tolerated(0.71) benign(0.029) TCGA-D3-A51F-06 19 13216333 13216333 G A TRMT1 Silent p.A557A 0.04 TCGA-D3-A51F-06 19 15230079 15230079 G A ILVBL Missense_Mutation p.L317F 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A51F-06 19 15989632 15989632 C T CYP4F2 Silent p.L504L 0.09 TCGA-D3-A51F-06 19 1828357 1828357 G A REXO1 Missense_Mutation p.A144V 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-D3-A51F-06 19 18895135 18895135 C T COMP Silent p.R651R 0.10 TCGA-D3-A51F-06 19 2438259 2438259 T C LMNB2 Missense_Mutation p.K196E 0.08 tolerated(0.1) possibly_damaging(0.46) TCGA-D3-A51F-06 19 35524522 35524522 C T SCN1B Silent p.T109T 0.06 TCGA-D3-A51F-06 19 36221458 36221458 C T KMT2B Silent p.S1739S 0.07 TCGA-D3-A51F-06 19 3641734 3641734 C T PIP5K1C Missense_Mutation p.E586K 0.15 tolerated_low_confidence(0.22) benign(0.027) TCGA-D3-A51F-06 19 50172187 50172187 C T BCL2L12 Silent p.P194P 0.09 TCGA-D3-A51F-06 19 51274355 51274355 G A GPR32 Nonsense_Mutation p.W166* 0.07 TCGA-D3-A51F-06 19 55341578 55341578 G A KIR3DL1 Missense_Mutation p.E395K 0.05 deleterious(0.02) possibly_damaging(0.486) TCGA-D3-A51F-06 19 57868138 57868138 C T ZNF304 Missense_Mutation p.H301Y 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A51F-06 19 57901461 57901461 C A AC003002.6 5'UTR 0.14 TCGA-D3-A51F-06 19 6495964 6495964 G A TUBB4A Silent p.P182P 0.07 TCGA-D3-A51F-06 19 6684839 6684839 C T C3 Missense_Mutation p.E1326K 0.05 tolerated(0.58) benign(0) TCGA-D3-A51F-06 19 8661064 8661064 C T ADAMTS10 Silent p.G410G 0.07 TCGA-D3-A51F-06 1 101705338 101705338 C T S1PR1 Silent p.I266I 0.08 TCGA-D3-A51F-06 1 110032601 110032601 G A ATXN7L2 Missense_Mutation p.G363S 0.04 tolerated(0.27) possibly_damaging(0.488) TCGA-D3-A51F-06 1 111435132 111435132 G A CD53 Missense_Mutation p.E77K 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 1 111490767 111490767 C T LRIF1 Silent p.L708L 0.08 TCGA-D3-A51F-06 1 151785759 151785759 A T RORC Missense_Mutation p.F377Y 0.10 tolerated(0.4) benign(0.251) TCGA-D3-A51F-06 1 155258175 155258175 C T HCN3 Missense_Mutation p.P749L 0.12 deleterious_low_confidence(0.01) benign(0.097) TCGA-D3-A51F-06 1 158724777 158724777 C T OR6K6 Missense_Mutation p.P58S 0.06 deleterious(0.03) benign(0.14) TCGA-D3-A51F-06 1 161018434 161018434 C T ARHGAP30 Missense_Mutation p.G793R 0.08 deleterious_low_confidence(0.01) benign(0.393) TCGA-D3-A51F-06 1 169500056 169500056 G A F5 Missense_Mutation p.R1726W 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 1 169500058 169500058 C A F5 Missense_Mutation p.C1725F 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A51F-06 1 172007473 172007473 C T DNM3 Silent p.H288H 0.07 TCGA-D3-A51F-06 1 173490487 173490487 C T SLC9C2 Missense_Mutation p.G898S 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 1 176903418 176903418 C T ASTN1 Silent p.A847A 0.09 TCGA-D3-A51F-06 1 179533843 179533843 G A NPHS2 Silent p.S120S 0.10 TCGA-D3-A51F-06 1 203708830 203708830 C T ATP2B4 Missense_Mutation p.P1156S 0.08 tolerated_low_confidence(0.74) benign(0.047) TCGA-D3-A51F-06 1 206327536 206327536 C T CTSE Missense_Mutation p.S242F 0.08 deleterious(0) possibly_damaging(0.671) TCGA-D3-A51F-06 1 223988514 223988514 T A TP53BP2 Splice_Site p.X409_splice 0.10 TCGA-D3-A51F-06 1 24662999 24662999 G A GRHL3 Silent p.T98T 0.05 TCGA-D3-A51F-06 1 28833908 28833908 C T SNORA73B 5'Flank 0.05 TCGA-D3-A51F-06 1 44070959 44070959 G A PTPRF Missense_Mutation p.M1078I 0.09 deleterious(0.05) benign(0.064) TCGA-D3-A51F-06 1 46527683 46527683 C T PIK3R3 Missense_Mutation p.E228K 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A51F-06 1 6649172 6649172 C T ZBTB48 Missense_Mutation p.P656L 0.06 deleterious_low_confidence(0) benign(0.227) TCGA-D3-A51F-06 20 56886156 56886156 C T RAB22A Missense_Mutation p.P32S 0.06 tolerated(0.19) benign(0.054) TCGA-D3-A51F-06 20 57766471 57766471 G A ZNF831 Missense_Mutation p.G133S 0.07 tolerated(0.19) possibly_damaging(0.634) TCGA-D3-A51F-06 20 57769537 57769537 C T ZNF831 Missense_Mutation p.H1155Y 0.05 deleterious(0.03) possibly_damaging(0.491) TCGA-D3-A51F-06 20 60987794 60987794 G A RBBP8NL Nonsense_Mutation p.Q588* 0.11 TCGA-D3-A51F-06 21 47704665 47704665 G A MCM3AP Missense_Mutation p.S179F 0.12 deleterious(0.01) benign(0.004) TCGA-D3-A51F-06 22 22890501 22890501 G A PRAME Silent p.F506F 0.07 TCGA-D3-A51F-06 22 26736405 26736405 G A SEZ6L Silent p.L673L 0.07 TCGA-D3-A51F-06 22 30891617 30891617 G T SEC14L4 Silent p.R63R 0.05 TCGA-D3-A51F-06 22 31059547 31059547 C T DUSP18 Nonsense_Mutation p.W148* 0.11 TCGA-D3-A51F-06 22 35660659 35660659 C T HMGXB4 Missense_Mutation p.S93L 0.05 tolerated(0.25) benign(0.001) TCGA-D3-A51F-06 22 51143466 51143466 C T SHANK3 Silent p.L673L 0.07 TCGA-D3-A51F-06 2 108999570 108999570 C T SULT1C4 Missense_Mutation p.P139S 0.09 deleterious(0.02) benign(0.424) TCGA-D3-A51F-06 2 131099642 131099642 C T CCDC115 Silent p.G19G 0.06 TCGA-D3-A51F-06 2 17699178 17699178 C T RAD51AP2 Missense_Mutation p.G169R 0.11 tolerated(0.2) benign(0.04) TCGA-D3-A51F-06 2 208866044 208866044 G A PLEKHM3 Missense_Mutation p.S107F 0.08 deleterious(0.02) possibly_damaging(0.595) TCGA-D3-A51F-06 2 209010522 209010522 G A CRYGB Silent p.I76I 0.06 TCGA-D3-A51F-06 2 217142440 217142440 G T MARCH4 Missense_Mutation p.Q274K 0.08 deleterious(0.02) benign(0.056) TCGA-D3-A51F-06 2 89309939 89309939 G A IGKV1-9 Missense_Mutation p.P6S 0.06 tolerated_low_confidence(0.05) benign(0.32) TCGA-D3-A51F-06 2 89309940 89309940 G A IGKV1-9 Silent p.V5V 0.06 TCGA-D3-A51F-06 3 140397060 140397060 C T TRIM42 5'UTR 0.07 TCGA-D3-A51F-06 3 38835297 38835297 C T SCN10A Missense_Mutation p.E69K 0.07 deleterious(0.01) benign(0.097) TCGA-D3-A51F-06 3 49933414 49933414 G T MST1R Missense_Mutation p.Q926K 0.05 tolerated(1) benign(0) TCGA-D3-A51F-06 3 52825873 52825873 G A ITIH1 Silent p.G894G 0.10 TCGA-D3-A51F-06 3 64644282 64644282 A T ADAMTS9 Missense_Mutation p.L289I 0.06 tolerated(0.11) benign(0.063) TCGA-D3-A51F-06 4 103553284 103553284 G A MANBA Missense_Mutation p.P857L 0.14 deleterious(0) possibly_damaging(0.855) TCGA-D3-A51F-06 4 126237670 126237670 C T FAT4 Missense_Mutation p.P35L 0.05 benign(0.062) TCGA-D3-A51F-06 4 138442567 138442567 C T PCDH18 Missense_Mutation p.M1008I 0.12 tolerated(0.1) probably_damaging(0.985) TCGA-D3-A51F-06 4 177098790 177098790 G A WDR17 Silent p.T1278T 0.15 TCGA-D3-A51F-06 4 47942867 47942867 G A CNGA1 Nonsense_Mutation p.Q262* 0.10 TCGA-D3-A51F-06 4 94411887 94411887 C T GRID2 Silent p.L652L 0.06 TCGA-D3-A51F-06 5 128983587 128983587 G A ADAMTS19 Missense_Mutation p.G662R 0.06 tolerated(0.47) benign(0.033) TCGA-D3-A51F-06 5 128983588 128983588 G A ADAMTS19 Missense_Mutation p.G662E 0.06 tolerated(0.24) benign(0.309) TCGA-D3-A51F-06 5 140182267 140182267 G A PCDHA3 Silent p.V495V 0.09 TCGA-D3-A51F-06 5 140812062 140812062 C T PCDHGA12 Missense_Mutation p.P579L 0.09 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D3-A51F-06 5 35774042 35774042 G A SPEF2 Missense_Mutation p.E1333K 0.16 deleterious(0) benign(0.437) TCGA-D3-A51F-06 6 106554952 106554952 C T PRDM1 Missense_Mutation p.S690F 0.07 tolerated(0.35) benign(0.002) TCGA-D3-A51F-06 6 15487610 15487610 C T JARID2 Missense_Mutation p.P248L 0.09 tolerated_low_confidence(0.13) benign(0.221) TCGA-D3-A51F-06 6 31915151 31915151 C T CFB Missense_Mutation p.P673S 0.07 tolerated(0.47) probably_damaging(1) TCGA-D3-A51F-06 6 43226929 43226929 C T TTBK1 Silent p.P390P 0.07 TCGA-D3-A51F-06 6 55925773 55925773 C T COL21A1 Silent p.V756V 0.15 TCGA-D3-A51F-06 7 100681340 100681340 C T MUC17 Missense_Mutation p.P2215S 0.09 unknown(0) TCGA-D3-A51F-06 7 100692185 100692185 T G MUC17 Missense_Mutation p.F4199V 0.13 unknown(0) TCGA-D3-A51F-06 7 100692187 100692187 C A MUC17 Missense_Mutation p.F4199L 0.13 unknown(0) TCGA-D3-A51F-06 7 138603612 138603612 G A KIAA1549 Missense_Mutation p.P254S 0.06 deleterious(0.03) possibly_damaging(0.849) TCGA-D3-A51F-06 7 139653219 139653219 G C TBXAS1 Missense_Mutation p.R215P 0.07 tolerated(0.28) benign(0.007) TCGA-D3-A51F-06 7 142250914 142250914 C T TRBV6-4 Missense_Mutation p.D45N 0.18 tolerated(0.38) benign(0.046) TCGA-D3-A51F-06 7 4153732 4153732 C T SDK1 Missense_Mutation p.R1217C 0.07 deleterious(0.04) benign(0.29) TCGA-D3-A51F-06 7 99474515 99474515 G A OR2AE1 Missense_Mutation p.L48F 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A51F-06 8 11614446 11614446 C T GATA4 Missense_Mutation p.P334S 0.10 tolerated(1) benign(0.005) TCGA-D3-A51F-06 8 139263247 139263247 C A FAM135B Missense_Mutation p.V127L 0.09 tolerated(1) benign(0.022) TCGA-D3-A51F-06 8 14022163 14022163 C T SGCZ Missense_Mutation p.S158N 0.11 tolerated(0.17) benign(0.049) TCGA-D3-A51F-06 8 144698813 144698813 G A TSTA3 Nonsense_Mutation p.Q24* 0.11 TCGA-D3-A51F-06 8 25168015 25168015 C T DOCK5 Missense_Mutation p.R429W 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 8 27290975 27290975 C T PTK2B Silent p.S337S 0.08 TCGA-D3-A51F-06 8 57078992 57078992 C T PLAG1 Missense_Mutation p.G438E 0.07 deleterious(0) probably_damaging(0.994) TCGA-D3-A51F-06 8 96166622 96166622 C T PLEKHF2 Missense_Mutation p.T117M 0.06 tolerated(0.05) possibly_damaging(0.884) TCGA-D3-A51F-06 9 117684 117684 G A FOXD4 Missense_Mutation p.P146S 0.05 deleterious(0) probably_damaging(0.997) TCGA-D3-A51F-06 9 4286286 4286286 G A GLIS3 Missense_Mutation p.S47L 0.11 deleterious(0.01) benign(0.016) TCGA-D3-A51F-06 9 72046280 72046280 C T APBA1 Missense_Mutation p.R826K 0.06 deleterious(0.03) probably_damaging(0.931) TCGA-D3-A51F-06 9 72755186 72755186 G A MAMDC2 Missense_Mutation p.D374N 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A51F-06 X 107464510 107464510 A G COL4A6 Missense_Mutation p.F81S 0.11 unknown(0) TCGA-D3-A51F-06 X 135638623 135638623 A G VGLL1 Silent p.L234L 0.09 TCGA-D3-A51F-06 X 142596953 142596953 C T SPANXN3 Silent p.Q39Q 0.08 TCGA-D3-A51F-06 X 151820052 151820052 T A GABRQ Missense_Mutation p.I322N 0.19 deleterious(0) possibly_damaging(0.839) TCGA-D3-A51F-06 X 16720904 16720904 G A CTPS2 Missense_Mutation p.P41L 0.11 deleterious(0.01) probably_damaging(1) TCGA-D3-A51F-06 X 17818679 17818679 C T RAI2 Silent p.G484G 0.10 TCGA-D3-A51F-06 X 22291979 22291979 C T ZNF645 Missense_Mutation p.P291S 0.11 tolerated(0.1) benign(0.001) TCGA-D3-A51F-06 X 52825608 52825608 C T SPANXN5 Missense_Mutation p.E47K 0.19 tolerated(0.39) benign(0.064) TCGA-D3-A51G-06 10 101486875 101486875 G A COX15 Silent p.F144F 0.88 TCGA-D3-A51G-06 10 103557674 103557674 G A MGEA5 Intron 0.90 TCGA-D3-A51G-06 10 103557675 103557675 G A MGEA5 Intron 0.86 TCGA-D3-A51G-06 10 104130480 104130480 G A GBF1 Missense_Mutation p.V1174M 0.80 tolerated(0.09) benign(0.06) TCGA-D3-A51G-06 10 104173588 104173588 C T PSD Silent p.R497R 0.67 TCGA-D3-A51G-06 10 113919767 113919767 G A GPAM Missense_Mutation p.P602S 0.69 tolerated(0.82) benign(0) TCGA-D3-A51G-06 10 115987843 115987843 C T TDRD1 Missense_Mutation p.T1166I 0.78 tolerated(0.45) probably_damaging(0.986) TCGA-D3-A51G-06 10 12046612 12046614 AAA - UPF2 In_Frame_Del p.D473_L474delinsE 0.78 TCGA-D3-A51G-06 10 123846349 123846349 C T TACC2 Missense_Mutation p.P1445L 0.62 benign(0.026) TCGA-D3-A51G-06 10 127569356 127569356 G A DHX32 Missense_Mutation p.S13F 0.82 deleterious_low_confidence(0.02) benign(0.153) TCGA-D3-A51G-06 10 129871681 129871681 G A PTPRE Nonsense_Mutation p.W515* 0.74 TCGA-D3-A51G-06 10 134021526 134021526 G A STK32C Silent p.A483A 0.82 TCGA-D3-A51G-06 10 134021527 134021527 G A STK32C Missense_Mutation p.A483V 0.78 deleterious_low_confidence(0.02) benign(0.058) TCGA-D3-A51G-06 10 135373592 135373592 G A SYCE1 Intron 0.75 TCGA-D3-A51G-06 10 22898640 22898640 C T PIP4K2A Missense_Mutation p.E51K 0.65 deleterious(0.01) possibly_damaging(0.703) TCGA-D3-A51G-06 10 24783481 24783481 C T KIAA1217 Nonsense_Mutation p.Q578* 0.71 TCGA-D3-A51G-06 10 26414335 26414335 T A MYO3A Missense_Mutation p.L638M 0.85 deleterious(0) probably_damaging(0.983) TCGA-D3-A51G-06 10 27551988 27551988 G A ARMC4P1 RNA 0.75 TCGA-D3-A51G-06 10 27687295 27687295 G A PTCHD3 Silent p.I744I 0.92 TCGA-D3-A51G-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.13 tolerated(0.05) possibly_damaging(0.691) TCGA-D3-A51G-06 10 30336640 30336640 C T KIAA1462 Silent p.R34R 0.81 TCGA-D3-A51G-06 10 3162143 3162143 C T PFKP Silent p.V530V 0.81 TCGA-D3-A51G-06 10 33140832 33140832 C T C10ORF68 Silent p.H574H 0.74 TCGA-D3-A51G-06 10 33502308 33502308 C T NRP1 Intron 0.79 TCGA-D3-A51G-06 10 37442557 37442557 A T ANKRD30A Nonsense_Mutation p.K533* 0.41 TCGA-D3-A51G-06 10 45799184 45799184 G A OR13A1 Silent p.F229F 0.75 TCGA-D3-A51G-06 10 48438486 48438486 G A GDF10 Silent p.V75V 0.88 TCGA-D3-A51G-06 10 50532584 50532584 C T C10orf71 Missense_Mutation p.T665I 0.83 tolerated(0.16) possibly_damaging(0.754) TCGA-D3-A51G-06 10 50532585 50532585 C T C10orf71 Silent p.T665T 0.83 TCGA-D3-A51G-06 10 50960188 50960188 C T OGDHL Silent p.R195R 0.83 TCGA-D3-A51G-06 10 5203822 5203822 C T AKR1CL1 Missense_Mutation p.M125I 0.89 tolerated(0.06) benign(0.097) TCGA-D3-A51G-06 10 52103313 52103313 C T SGMS1 Missense_Mutation p.E188K 0.79 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 10 52601629 52601629 C T A1CF Missense_Mutation p.E128K 0.87 deleterious(0.03) possibly_damaging(0.81) TCGA-D3-A51G-06 10 54530431 54530431 C T MBL2 Silent p.P101P 0.78 TCGA-D3-A51G-06 10 61029768 61029768 C T FAM13C Missense_Mutation p.G232S 0.81 tolerated(0.08) probably_damaging(0.933) TCGA-D3-A51G-06 10 6553153 6553153 T C PRKCQ Missense_Mutation p.N41S 0.83 tolerated(0.79) benign(0.028) TCGA-D3-A51G-06 10 6553154 6553154 T A PRKCQ Missense_Mutation p.N41Y 0.84 deleterious(0.04) benign(0.092) TCGA-D3-A51G-06 10 71018672 71018672 G A HKDC1 Missense_Mutation p.D725N 0.80 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 10 73405699 73405699 C T CDH23 Missense_Mutation p.P10S 0.90 tolerated(0.12) probably_damaging(0.999) TCGA-D3-A51G-06 10 74103169 74103169 G A DNAJB12 Missense_Mutation p.H172Y 0.77 deleterious(0) probably_damaging(0.991) TCGA-D3-A51G-06 10 75553423 75553423 C T ZSWIM8 Silent p.A797A 0.78 TCGA-D3-A51G-06 10 90427098 90427098 G A LIPF Missense_Mutation p.G25E 0.82 tolerated(0.29) probably_damaging(0.99) TCGA-D3-A51G-06 10 90521241 90521241 G A LIPN Missense_Mutation p.E27K 0.72 tolerated(0.62) benign(0.002) TCGA-D3-A51G-06 10 95085655 95085655 C T MYOF Silent p.R1733R 0.81 TCGA-D3-A51G-06 10 95111581 95111581 G A MYOF Silent p.F1168F 0.75 TCGA-D3-A51G-06 10 97956669 97956669 C T BLNK Missense_Mutation p.E416K 0.73 deleterious(0) probably_damaging(0.971) TCGA-D3-A51G-06 10 98743333 98743333 C T C10orf12 Missense_Mutation p.S729L 0.86 tolerated(0.19) benign(0.117) TCGA-D3-A51G-06 10 99139478 99139478 G T RRP12 Missense_Mutation p.T528K 0.80 tolerated(0.3) benign(0.008) TCGA-D3-A51G-06 11 100999493 100999493 G A PGR Silent p.P103P 0.21 TCGA-D3-A51G-06 11 103339406 103339406 C T DYNC2H1 Silent p.L4253L 0.47 TCGA-D3-A51G-06 11 10776721 10776721 G A CTR9 Missense_Mutation p.D121N 0.18 deleterious(0) probably_damaging(0.978) TCGA-D3-A51G-06 11 108155142 108155142 G A ATM Missense_Mutation p.R1312K 0.54 tolerated(0.13) benign(0.099) TCGA-D3-A51G-06 11 111385544 111385544 G A C11orf88 Missense_Mutation p.R12Q 0.36 tolerated(0.62) benign(0.002) TCGA-D3-A51G-06 11 113295413 113295413 G A DRD2 Intron 0.39 TCGA-D3-A51G-06 11 113660422 113660422 G A ATF4P4 RNA 0.50 TCGA-D3-A51G-06 11 114568828 114568828 C T NXPE2 Missense_Mutation p.S65L 0.43 tolerated(0.91) benign(0.005) TCGA-D3-A51G-06 11 116633303 116633303 G A BUD13 Silent p.S334S 0.57 TCGA-D3-A51G-06 11 116691444 116691444 G A APOA4 3'UTR 0.50 TCGA-D3-A51G-06 11 117342748 117342748 G A DSCAML1 Missense_Mutation p.S990F 0.55 deleterious(0) possibly_damaging(0.739) TCGA-D3-A51G-06 11 118081247 118081247 A T AMICA1 Missense_Mutation p.F127I 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A51G-06 11 118081248 118081248 C T AMICA1 Silent p.V126V 0.28 TCGA-D3-A51G-06 11 118771541 118771541 C T BCL9L Missense_Mutation p.G971R 0.59 possibly_damaging(0.854) TCGA-D3-A51G-06 11 118779354 118779354 G A BCL9L Missense_Mutation p.P13S 0.33 possibly_damaging(0.641) TCGA-D3-A51G-06 11 120175767 120175767 C T POU2F3 Missense_Mutation p.S160F 0.50 deleterious(0.03) possibly_damaging(0.9) TCGA-D3-A51G-06 11 120732707 120732707 C T GRIK4 Missense_Mutation p.R262C 0.54 tolerated(0.08) probably_damaging(0.963) TCGA-D3-A51G-06 11 121008170 121008170 C T TECTA Silent p.I994I 0.28 TCGA-D3-A51G-06 11 121358779 121358779 C T SORL1 Silent p.I189I 0.28 TCGA-D3-A51G-06 11 12315139 12315139 C T MICALCL Missense_Mutation p.S54L 0.23 tolerated(0.05) benign(0.039) TCGA-D3-A51G-06 11 123624923 123624923 G A OR6X1 Missense_Mutation p.H102Y 0.23 tolerated(1) benign(0.122) TCGA-D3-A51G-06 11 123810636 123810636 C T OR4D5 Missense_Mutation p.H105Y 0.54 deleterious(0) probably_damaging(0.968) TCGA-D3-A51G-06 11 123847742 123847742 G A OR10S1 Silent p.I219I 0.48 TCGA-D3-A51G-06 11 123894025 123894025 T A OR10G9 Missense_Mutation p.F102L 0.60 deleterious(0.01) benign(0.066) TCGA-D3-A51G-06 11 123901064 123901064 C T OR10G8 Silent p.I245I 0.25 TCGA-D3-A51G-06 11 123909028 123909028 G A OR10G7 Silent p.I227I 0.21 TCGA-D3-A51G-06 11 124180162 124180162 G A OR8D1 Silent p.S167S 0.42 TCGA-D3-A51G-06 11 124253153 124253153 G A OR8B2 Silent p.F29F 0.17 TCGA-D3-A51G-06 11 124622007 124622007 G A VSIG2 Silent p.L9L 0.40 TCGA-D3-A51G-06 11 124745039 124745039 C T ROBO3 Silent p.F702F 0.43 TCGA-D3-A51G-06 11 124747939 124747939 C T ROBO3 Silent p.T1031T 0.50 TCGA-D3-A51G-06 11 124765416 124765416 G A ROBO4 Missense_Mutation p.P325S 0.27 deleterious(0) probably_damaging(0.945) TCGA-D3-A51G-06 11 125267885 125267885 G A PKNOX2 Missense_Mutation p.S172N 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A51G-06 11 129802083 129802083 G A PRDM10 Missense_Mutation p.P401S 0.32 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A51G-06 11 132527066 132527066 C T OPCML Missense_Mutation p.D106N 0.35 tolerated(0.08) possibly_damaging(0.67) TCGA-D3-A51G-06 11 14101557 14101557 G T SPON1 RNA 0.32 TCGA-D3-A51G-06 11 14101558 14101558 G A SPON1 RNA 0.33 TCGA-D3-A51G-06 11 14277324 14277324 C T SPON1 RNA 0.29 TCGA-D3-A51G-06 11 15098931 15098931 C T CALCB Silent p.F108F 0.27 TCGA-D3-A51G-06 11 16873845 16873845 A G PLEKHA7 Silent p.L194L 0.13 TCGA-D3-A51G-06 11 18955471 18955471 C T MRGPRX1 Silent p.L287L 0.08 TCGA-D3-A51G-06 11 18955513 18955513 G A MRGPRX1 Silent p.F273F 0.22 TCGA-D3-A51G-06 11 27016612 27016612 C T FIBIN Missense_Mutation p.S180F 0.29 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-D3-A51G-06 11 2993357 2993357 G T NAP1L4 Missense_Mutation p.A97E 0.45 tolerated(0.73) probably_damaging(0.96) TCGA-D3-A51G-06 11 33564060 33564060 T C KIAA1549L Silent p.V20V 0.31 TCGA-D3-A51G-06 11 34152949 34152949 C T NAT10 Missense_Mutation p.S464F 0.26 deleterious(0.04) benign(0.063) TCGA-D3-A51G-06 11 3423084 3423084 C T TSSC2 RNA 0.53 TCGA-D3-A51G-06 11 34533109 34533109 G A ELF5 Missense_Mutation p.S3F 0.52 tolerated_low_confidence(0.06) benign(0.012) TCGA-D3-A51G-06 11 36597719 36597719 C T RAG1 Silent p.S955S 0.26 TCGA-D3-A51G-06 11 3712680 3712680 G A NUP98 Missense_Mutation p.P1451S 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 11 4112756 4112756 C T STIM1 Silent p.L596L 0.22 TCGA-D3-A51G-06 11 4389234 4389234 G A OR52B4 Missense_Mutation p.R98C 0.28 tolerated(0.15) benign(0.002) TCGA-D3-A51G-06 11 44148390 44148390 C T EXT2 Missense_Mutation p.R355C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 11 44940819 44940819 G A TSPAN18 Missense_Mutation p.D130N 0.21 tolerated(0.84) benign(0.002) TCGA-D3-A51G-06 11 44959125 44959125 G A TP53I11 Missense_Mutation p.R57W 0.33 deleterious(0) possibly_damaging(0.896) TCGA-D3-A51G-06 11 45265864 45265864 C T SYT13 Silent p.L340L 0.60 TCGA-D3-A51G-06 11 4622013 4622013 G A TRIM68 Silent p.I317I 0.15 TCGA-D3-A51G-06 11 4703402 4703402 G A OR51E2 Silent p.H180H 0.46 TCGA-D3-A51G-06 11 47304502 47304502 C T MADD Missense_Mutation p.S615F 0.47 tolerated(0.09) probably_damaging(0.963) TCGA-D3-A51G-06 11 47436732 47436732 G A SLC39A13 Intron 0.67 TCGA-D3-A51G-06 11 49974850 49974850 G A OR4C13 Missense_Mutation p.M292I 0.55 tolerated_low_confidence(0.08) benign(0.012) TCGA-D3-A51G-06 11 5020782 5020782 C T OR51L1 Silent p.S190S 0.59 TCGA-D3-A51G-06 11 5153366 5153366 C T OR52A5 Silent p.L169L 0.18 TCGA-D3-A51G-06 11 55110948 55110948 C T OR4A16 Missense_Mutation p.S91F 0.57 deleterious_low_confidence(0.01) benign(0.295) TCGA-D3-A51G-06 11 55339780 55339780 C T OR4C16 Silent p.F59F 0.49 TCGA-D3-A51G-06 11 55703324 55703324 G A OR5I1 Missense_Mutation p.P185S 0.62 deleterious(0.03) possibly_damaging(0.857) TCGA-D3-A51G-06 11 55905119 55905119 G A OR8J3 Missense_Mutation p.P26S 0.24 deleterious(0.02) possibly_damaging(0.838) TCGA-D3-A51G-06 11 56510724 56510724 G A OR9G4 Silent p.I188I 0.19 TCGA-D3-A51G-06 11 56756587 56756587 G A OR5AK2 Missense_Mutation p.A67T 0.55 deleterious(0) probably_damaging(0.959) TCGA-D3-A51G-06 11 56949442 56949442 C T LRRC55 Silent p.S25S 0.31 TCGA-D3-A51G-06 11 57188447 57188447 T G SLC43A3 Missense_Mutation p.K177Q 0.52 tolerated(0.06) probably_damaging(0.945) TCGA-D3-A51G-06 11 57381809 57381809 G A SERPING1 Missense_Mutation p.D420N 0.52 tolerated(0.52) benign(0.38) TCGA-D3-A51G-06 11 58206937 58206937 C T OR5B12 Missense_Mutation p.E230K 0.24 tolerated_low_confidence(0.12) benign(0.026) TCGA-D3-A51G-06 11 5842147 5842147 C T OR52N2 Silent p.F194F 0.60 TCGA-D3-A51G-06 11 58480301 58480301 G A GLYAT Missense_Mutation p.P83L 0.49 tolerated(0.52) benign(0.029) TCGA-D3-A51G-06 11 5862813 5862813 G A OR52E6 Silent p.F105F 0.25 TCGA-D3-A51G-06 11 5969156 5969156 G A OR56A3 Missense_Mutation p.D194N 0.51 tolerated(0.05) benign(0.081) TCGA-D3-A51G-06 11 60785414 60785414 C T CD6 Missense_Mutation p.S589F 0.32 deleterious(0.02) possibly_damaging(0.646) TCGA-D3-A51G-06 11 61018873 61018873 C T PGA5 3'UTR 0.57 TCGA-D3-A51G-06 11 62037647 62037647 C T SCGB2A2 5'UTR 0.30 TCGA-D3-A51G-06 11 62159752 62159752 C T ASRGL1 Missense_Mutation p.P308L 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A51G-06 11 62521635 62521635 C T ZBTB3 5'UTR 0.45 TCGA-D3-A51G-06 11 62521636 62521636 C T ZBTB3 5'UTR 0.45 TCGA-D3-A51G-06 11 63283158 63283158 C T LGALS12 Silent p.F280F 0.17 TCGA-D3-A51G-06 11 64112137 64112137 C TT CCDC88B Frame_Shift_Ins p.Q709Sfs*34 0.28 TCGA-D3-A51G-06 11 64812008 64812008 G A SAC3D1 Missense_Mutation p.A296T 0.54 tolerated(0.2) possibly_damaging(0.729) TCGA-D3-A51G-06 11 6503414 6503414 C T TIMM10B Missense_Mutation p.A92V 0.67 tolerated(0.14) benign(0.004) TCGA-D3-A51G-06 11 65144474 65144474 C T SLC25A45 Missense_Mutation p.G138E 0.57 tolerated(0.28) possibly_damaging(0.772) TCGA-D3-A51G-06 11 65147339 65147339 G A SLC25A45 Missense_Mutation p.S51F 0.49 deleterious(0) probably_damaging(0.914) TCGA-D3-A51G-06 11 65321711 65321711 G A LTBP3 Silent p.L158L 0.22 TCGA-D3-A51G-06 11 65321712 65321712 G A LTBP3 Silent p.G157G 0.22 TCGA-D3-A51G-06 11 65637338 65637338 G A EFEMP2 Silent p.F239F 0.51 TCGA-D3-A51G-06 11 65793107 65793107 G A CATSPER1 Silent p.S248S 0.29 TCGA-D3-A51G-06 11 65811070 65811070 G A GAL3ST3 Silent p.F68F 0.35 TCGA-D3-A51G-06 11 65978657 65978657 G A PACS1 Missense_Mutation p.R196K 0.58 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A51G-06 11 66131732 66131732 C T SLC29A2 Missense_Mutation p.G408D 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 11 66131733 66131733 C T SLC29A2 Missense_Mutation p.G408S 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 11 66620223 66620223 G A PC Missense_Mutation p.P533L 0.51 tolerated(0.1) benign(0.009) TCGA-D3-A51G-06 11 66625721 66625721 C T LRFN4 Missense_Mutation p.P169L 0.60 tolerated(0.34) benign(0.002) TCGA-D3-A51G-06 11 67399163 67399163 C T TBX10 Silent p.R357R 0.31 TCGA-D3-A51G-06 11 67402308 67402308 G A TBX10 Missense_Mutation p.P119L 0.42 deleterious(0) probably_damaging(0.967) TCGA-D3-A51G-06 11 68658813 68658813 G A MRPL21 Missense_Mutation p.P202S 0.55 deleterious(0) probably_damaging(0.994) TCGA-D3-A51G-06 11 6977574 6977574 C T ZNF215 Missense_Mutation p.H456Y 0.49 tolerated(0.09) benign(0) TCGA-D3-A51G-06 11 7021188 7021188 G A ZNF214 Missense_Mutation p.H576Y 0.51 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 11 71717120 71717120 G A NUMA1 Missense_Mutation p.R1885C 0.48 probably_damaging(0.999) TCGA-D3-A51G-06 11 7335110 7335110 C T SYT9 Silent p.L328L 0.52 TCGA-D3-A51G-06 11 76371451 76371451 T C LRRC32 Missense_Mutation p.N396D 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 11 77387986 77387986 A T RSF1 Silent p.S1064S 0.19 TCGA-D3-A51G-06 11 7817638 7817638 C T OR5P2 Silent p.L284L 0.29 TCGA-D3-A51G-06 11 7982099 7982099 G A NLRP10 Missense_Mutation p.P354S 0.57 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 11 8060512 8060512 G A TUB Missense_Mutation p.G31E 0.36 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D3-A51G-06 11 810284 810284 C T RPLP2 Missense_Mutation p.S17F 0.39 deleterious(0) probably_damaging(0.944) TCGA-D3-A51G-06 11 83173111 83173111 C T DLG2 Missense_Mutation p.E919K 0.25 deleterious(0) probably_damaging(0.975) TCGA-D3-A51G-06 11 88300258 88300258 G A GRM5 Silent p.L865L 0.46 TCGA-D3-A51G-06 11 89421765 89421765 G T FOLH1B RNA 0.51 TCGA-D3-A51G-06 11 92523157 92523157 C T FAT3 Nonsense_Mutation p.Q1462* 0.28 TCGA-D3-A51G-06 11 92615919 92615919 C A FAT3 Silent p.I4099I 0.29 TCGA-D3-A51G-06 11 93212165 93212165 G C SMCO4 3'UTR 0.24 TCGA-D3-A51G-06 12 101560399 101560399 G A SLC5A8 Missense_Mutation p.P467S 0.24 tolerated(0.16) benign(0.005) TCGA-D3-A51G-06 12 107080822 107080822 G A RFX4 Missense_Mutation p.E189K 0.32 deleterious(0.01) benign(0.231) TCGA-D3-A51G-06 12 107237704 107237704 C T RIC8B Silent p.I380I 0.42 TCGA-D3-A51G-06 12 10954402 10954402 G A TAS2R7 Silent p.S256S 0.45 TCGA-D3-A51G-06 12 109577350 109577350 C T ACACB Missense_Mutation p.P47L 0.29 deleterious_low_confidence(0.04) benign(0.05) TCGA-D3-A51G-06 12 109577351 109577351 C T ACACB Silent p.P47P 0.30 TCGA-D3-A51G-06 12 111855963 111855963 C T SH2B3 Missense_Mutation p.A5V 0.49 deleterious(0) unknown(0) TCGA-D3-A51G-06 12 111855964 111855964 C T SH2B3 Silent p.A5A 0.47 TCGA-D3-A51G-06 12 111990157 111990157 C T ATXN2 Silent p.E326E 0.12 TCGA-D3-A51G-06 12 112228368 112228368 T C ALDH2 Splice_Site p.X227_splice 0.53 TCGA-D3-A51G-06 12 112608237 112608237 C T HECTD4 Silent p.T3838T 0.24 TCGA-D3-A51G-06 12 112650407 112650407 G A HECTD4 Missense_Mutation p.P2359S 0.47 probably_damaging(0.948) TCGA-D3-A51G-06 12 112707633 112707633 G A HECTD4 Silent p.F588F 0.35 TCGA-D3-A51G-06 12 117665378 117665378 G A NOS1 Silent p.F1192F 0.28 TCGA-D3-A51G-06 12 117768733 117768733 G A NOS1 Missense_Mutation p.R48C 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A51G-06 12 120502576 120502576 C A CCDC64 Missense_Mutation p.R268S 0.24 deleterious(0) possibly_damaging(0.815) TCGA-D3-A51G-06 12 122716889 122716889 G A VPS33A Silent p.S565S 0.30 TCGA-D3-A51G-06 12 122717444 122717444 G A VPS33A Silent p.S504S 0.53 TCGA-D3-A51G-06 12 123641440 123641440 G A MPHOSPH9 Missense_Mutation p.R1004C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 12 129558525 129558525 G A TMEM132D Silent p.I1065I 0.50 TCGA-D3-A51G-06 12 129566552 129566552 C T TMEM132D Missense_Mutation p.E559K 0.24 tolerated(0.06) benign(0.298) TCGA-D3-A51G-06 12 129694173 129694173 C T TMEM132D Silent p.G445G 0.38 TCGA-D3-A51G-06 12 130929789 130929789 C T RIMBP2 Missense_Mutation p.E186K 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 12 132496054 132496054 C T EP400 Missense_Mutation p.P1106S 0.36 unknown(0) TCGA-D3-A51G-06 12 133218812 133218812 G A POLE Silent p.F1708F 0.35 TCGA-D3-A51G-06 12 14019049 14019049 G A GRIN2B Missense_Mutation p.P32S 0.24 tolerated(0.15) benign(0) TCGA-D3-A51G-06 12 14656776 14656776 T G PLBD1 Missense_Mutation p.Q531P 0.22 tolerated(0.22) possibly_damaging(0.609) TCGA-D3-A51G-06 12 14773987 14773987 C T GUCY2C Missense_Mutation p.G922E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 12 18852825 18852825 C T PLCZ1 Silent p.E359E 0.43 TCGA-D3-A51G-06 12 18854538 18854538 T G PLCZ1 Intron 0.52 TCGA-D3-A51G-06 12 1995415 1995415 C T CACNA2D4 Missense_Mutation p.E323K 0.46 deleterious(0.01) possibly_damaging(0.777) TCGA-D3-A51G-06 12 2027447 2027447 G A CACNA2D4 Missense_Mutation p.P65S 0.62 tolerated(0.22) benign(0.007) TCGA-D3-A51G-06 12 21229393 21229393 T G SLCO1B7 Missense_Mutation p.I538M 0.35 tolerated(0.05) possibly_damaging(0.843) TCGA-D3-A51G-06 12 21457496 21457496 C T SLCO1A2 Missense_Mutation p.E152K 0.49 deleterious(0.05) benign(0.031) TCGA-D3-A51G-06 12 21919174 21919174 G A KCNJ8 Missense_Mutation p.P253L 0.37 deleterious(0.01) benign(0.142) TCGA-D3-A51G-06 12 21997764 21997764 C T ABCC9 Missense_Mutation p.G1061D 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A51G-06 12 2224599 2224599 G A CACNA1C Missense_Mutation p.G87R 0.33 tolerated(0.09) benign(0.017) TCGA-D3-A51G-06 12 25148862 25148862 T C C12orf77 Missense_Mutation p.T96A 0.68 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-D3-A51G-06 12 319171 319171 G A SLC6A12 5'UTR 0.60 TCGA-D3-A51G-06 12 31944879 31944879 G A H3F3C Silent p.I74I 0.29 TCGA-D3-A51G-06 12 32369310 32369310 G A BICD1 Missense_Mutation p.E115K 0.24 deleterious(0) probably_damaging(0.944) TCGA-D3-A51G-06 12 32481286 32481286 C T BICD1 Missense_Mutation p.R633W 0.50 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 12 33579075 33579075 G A SYT10 Silent p.T169T 0.22 TCGA-D3-A51G-06 12 336826 336826 C T SLC6A13 Missense_Mutation p.M280I 0.20 tolerated(0.58) possibly_damaging(0.457) TCGA-D3-A51G-06 12 39760928 39760928 T C KIF21A Silent p.T213T 0.29 TCGA-D3-A51G-06 12 40345070 40345070 A T SLC2A13 Silent p.I341I 0.48 TCGA-D3-A51G-06 12 40345071 40345071 A G SLC2A13 Missense_Mutation p.I341T 0.48 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 12 41365258 41365258 G A CNTN1 Intron 0.21 TCGA-D3-A51G-06 12 41365276 41365276 C T CNTN1 Intron 0.27 TCGA-D3-A51G-06 12 43846406 43846406 C T ADAMTS20 Missense_Mutation p.R618Q 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 12 45417512 45417512 T C DBX2 Missense_Mutation p.N222S 0.28 tolerated(0.35) benign(0.004) TCGA-D3-A51G-06 12 48919555 48919555 C T OR8S1 Silent p.L47L 0.51 TCGA-D3-A51G-06 12 48920005 48920005 C T OR8S1 Silent p.I197I 0.36 TCGA-D3-A51G-06 12 49433939 49433939 G A KMT2D Silent p.F2538F 0.29 TCGA-D3-A51G-06 12 50036417 50036417 G A PRPF40B Missense_Mutation p.E693K 0.55 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A51G-06 12 50854977 50854977 C T LARP4 Missense_Mutation p.S394F 0.27 deleterious(0.01) possibly_damaging(0.664) TCGA-D3-A51G-06 12 5154927 5154927 G A KCNA5 Silent p.E538E 0.34 TCGA-D3-A51G-06 12 51589802 51589802 G A POU6F1 Missense_Mutation p.P67L 0.50 tolerated_low_confidence(0.12) benign(0.002) TCGA-D3-A51G-06 12 51890982 51890982 C T SLC4A8 Intron 0.62 TCGA-D3-A51G-06 12 52282528 52282528 C T ANKRD33 Missense_Mutation p.P108S 0.32 tolerated(0.33) benign(0.04) TCGA-D3-A51G-06 12 52682147 52682147 C T KRT81 Missense_Mutation p.E245K 0.52 deleterious(0.02) probably_damaging(0.911) TCGA-D3-A51G-06 12 52884422 52884422 C T KRT6A Silent p.E336E 0.21 TCGA-D3-A51G-06 12 53566413 53566413 G A CSAD Missense_Mutation p.P76L 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 12 53683083 53683083 C T ESPL1 Missense_Mutation p.L1640F 0.25 deleterious(0.03) benign(0.172) TCGA-D3-A51G-06 12 53879241 53879241 G A MAP3K12 Silent p.D280D 0.51 TCGA-D3-A51G-06 12 54686207 54686207 C T NFE2 Missense_Mutation p.G358E 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 12 54803033 54803033 T C ITGA5 Missense_Mutation p.Y189C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 12 55641350 55641350 C A OR6C74 Missense_Mutation p.N93K 0.23 deleterious_low_confidence(0.01) benign(0.186) TCGA-D3-A51G-06 12 56487190 56487190 C T ERBB3 Silent p.L446L 0.25 TCGA-D3-A51G-06 12 56495343 56495343 C T ERBB3 Missense_Mutation p.S1178F 0.21 deleterious(0.03) possibly_damaging(0.77) TCGA-D3-A51G-06 12 56676659 56676659 G A CS Silent p.I128I 0.39 TCGA-D3-A51G-06 12 57389466 57389466 C T GPR182 Missense_Mutation p.A158V 0.34 tolerated(0.05) benign(0.2) TCGA-D3-A51G-06 12 58024787 58024787 G A B4GALNT1 Missense_Mutation p.P156S 0.43 deleterious(0) possibly_damaging(0.798) TCGA-D3-A51G-06 12 5848555 5848555 G A ANO2 Silent p.F450F 0.31 TCGA-D3-A51G-06 12 59266363 59266363 C T LRIG3 Silent p.L1117L 0.55 TCGA-D3-A51G-06 12 6167203 6167203 G A VWF Missense_Mutation p.P514L 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A51G-06 12 65856974 65856974 C T MSRB3 Missense_Mutation p.R151C 0.56 deleterious(0) probably_damaging(0.983) TCGA-D3-A51G-06 12 66152165 66152165 G A RPSAP52 RNA 0.54 TCGA-D3-A51G-06 12 6787562 6787562 G A ZNF384 Silent p.T139T 0.41 TCGA-D3-A51G-06 12 6787563 6787563 G A ZNF384 Missense_Mutation p.T139I 0.41 deleterious(0) benign(0.206) TCGA-D3-A51G-06 12 69265632 69265632 G A CPM Silent p.I121I 0.27 TCGA-D3-A51G-06 12 6979797 6979797 G A TPI1 3'UTR 0.52 TCGA-D3-A51G-06 12 71029628 71029628 G A PTPRB Nonsense_Mutation p.R92* 0.67 TCGA-D3-A51G-06 12 7169929 7169929 C T C1S Silent p.L52L 0.21 TCGA-D3-A51G-06 12 7177180 7177180 C T C1S Missense_Mutation p.P431L 0.24 tolerated(0.06) benign(0.013) TCGA-D3-A51G-06 12 71946958 71946958 C T LGR5 Silent p.P178P 0.21 TCGA-D3-A51G-06 12 71977544 71977544 C T LGR5 Missense_Mutation p.S585F 0.31 deleterious(0.03) benign(0.018) TCGA-D3-A51G-06 12 72050821 72050821 G A ZFC3H1 Missense_Mutation p.P287S 0.37 tolerated(0.15) possibly_damaging(0.642) TCGA-D3-A51G-06 12 7289621 7289621 C T CLSTN3 Silent p.T375T 0.25 TCGA-D3-A51G-06 12 7548808 7548808 T A CD163L1 Missense_Mutation p.I645F 0.42 deleterious(0.04) probably_damaging(1) TCGA-D3-A51G-06 12 7899960 7899960 C T CLEC4C 5'UTR 0.59 TCGA-D3-A51G-06 12 81101782 81101782 G A MYF6 Missense_Mutation p.R95Q 0.33 deleterious(0) benign(0.355) TCGA-D3-A51G-06 12 8374645 8374645 G A FAM90A1 Nonsense_Mutation p.Q390* 0.50 TCGA-D3-A51G-06 12 86373909 86373909 G A MGAT4C Missense_Mutation p.R199C 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 12 9085237 9085237 T A PHC1 Missense_Mutation p.I395N 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A51G-06 12 9346712 9346712 G A PZP Silent p.I405I 0.37 TCGA-D3-A51G-06 12 9355002 9355002 G A PZP Intron 0.25 TCGA-D3-A51G-06 12 96104369 96104369 C T NTN4 Missense_Mutation p.D344N 0.16 deleterious(0.03) benign(0.179) TCGA-D3-A51G-06 12 97102502 97102502 G A C12orf55 Silent p.A2215A 0.25 TCGA-D3-A51G-06 12 978050 978050 C T WNK1 Intron 0.57 TCGA-D3-A51G-06 13 109379908 109379908 G A MYO16 Missense_Mutation p.D140N 0.19 deleterious(0) probably_damaging(0.986) TCGA-D3-A51G-06 13 109475607 109475607 C T MYO16 Missense_Mutation p.P338S 0.53 tolerated(0.13) benign(0.065) TCGA-D3-A51G-06 13 111088644 111088644 G A COL4A2 Missense_Mutation p.G252E 0.44 probably_damaging(0.999) TCGA-D3-A51G-06 13 111532020 111532020 G A ANKRD10 Silent p.A409A 0.36 TCGA-D3-A51G-06 13 113536357 113536357 C T ATP11A 3'UTR 0.14 TCGA-D3-A51G-06 13 113744217 113744217 C T MCF2L Intron 0.48 TCGA-D3-A51G-06 13 115090371 115090371 C T CHAMP1 Missense_Mutation p.P352S 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A51G-06 13 20625720 20625720 C T ZMYM2 Missense_Mutation p.P814S 0.53 deleterious(0) benign(0.147) TCGA-D3-A51G-06 13 20625721 20625721 C T ZMYM2 Missense_Mutation p.P814L 0.48 deleterious(0) benign(0.221) TCGA-D3-A51G-06 13 24465536 24465536 C T C1QTNF9B Silent p.G298G 0.38 TCGA-D3-A51G-06 13 29287434 29287434 C T SLC46A3 Nonsense_Mutation p.W148* 0.54 TCGA-D3-A51G-06 13 32711037 32711037 C T FRY Silent p.L369L 0.49 TCGA-D3-A51G-06 13 32753925 32753925 C T FRY Silent p.S995S 0.32 TCGA-D3-A51G-06 13 39358914 39358914 T C FREM2 Silent p.A1996A 0.48 TCGA-D3-A51G-06 13 41134688 41134688 G A FOXO1 Missense_Mutation p.R314C 0.31 deleterious(0) probably_damaging(0.993) TCGA-D3-A51G-06 13 41650276 41650276 C T WBP4 Missense_Mutation p.S220F 0.41 deleterious(0.01) possibly_damaging(0.547) TCGA-D3-A51G-06 13 43788201 43788201 C T ENOX1 Silent p.Q619Q 0.28 TCGA-D3-A51G-06 13 46357545 46357545 C T SIAH3 Silent p.E261E 0.54 TCGA-D3-A51G-06 13 48953743 48953743 G A RB1 Missense_Mutation p.G449E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 13 48955569 48955569 C A RB1 Missense_Mutation p.A562E 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 13 48955570 48955570 A G RB1 Silent p.A562A 0.41 TCGA-D3-A51G-06 13 49776048 49776048 C T FNDC3A Missense_Mutation p.L1034F 0.37 tolerated(1) benign(0.011) TCGA-D3-A51G-06 13 51826269 51826269 C T FAM124A Missense_Mutation p.P292S 0.37 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 13 52549114 52549114 G A ATP7B Missense_Mutation p.S81F 0.57 deleterious(0.03) probably_damaging(0.987) TCGA-D3-A51G-06 13 52796729 52796729 C T TPTE2P2 RNA 0.40 TCGA-D3-A51G-06 13 74269665 74269665 G A KLF12 Missense_Mutation p.H391Y 0.40 deleterious(0) probably_damaging(0.993) TCGA-D3-A51G-06 13 76134927 76134927 C T UCHL3 Silent p.F31F 0.56 TCGA-D3-A51G-06 13 76395465 76395465 C T LMO7 Missense_Mutation p.P554L 0.39 deleterious(0.05) benign(0.103) TCGA-D3-A51G-06 13 77570096 77570096 G A CLN5 Missense_Mutation p.M182I 0.47 tolerated(0.14) benign(0.009) TCGA-D3-A51G-06 13 77692498 77692498 G A MYCBP2 Intron 0.33 TCGA-D3-A51G-06 13 78477464 78477464 T C EDNRB Missense_Mutation p.K300E 0.26 deleterious(0.01) possibly_damaging(0.66) TCGA-D3-A51G-06 13 95264595 95264595 C T GPR180 Silent p.N152N 0.56 TCGA-D3-A51G-06 13 96536846 96536846 G A UGGT2 Missense_Mutation p.P1043S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 13 99515695 99515695 G A DOCK9 Missense_Mutation p.R1132C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 14 100595084 100595084 G A EVL Missense_Mutation p.R239Q 0.23 deleterious(0.03) benign(0.335) TCGA-D3-A51G-06 14 101402864 101402864 G A SNORD113-4 RNA 0.23 TCGA-D3-A51G-06 14 101404556 101404556 G A SNORD113-5 RNA 0.27 TCGA-D3-A51G-06 14 101520688 101520688 G A MIR382 RNA 0.40 TCGA-D3-A51G-06 14 102467310 102467310 C T DYNC1H1 Missense_Mutation p.A1365V 0.27 benign(0.094) TCGA-D3-A51G-06 14 102476379 102476379 C T DYNC1H1 Silent p.F2059F 0.55 TCGA-D3-A51G-06 14 103412838 103412838 G A CDC42BPB Missense_Mutation p.L1239F 0.50 tolerated(0.09) possibly_damaging(0.786) TCGA-D3-A51G-06 14 104460925 104460925 C T TDRD9 Silent p.V435V 0.59 TCGA-D3-A51G-06 14 105410201 105410201 G A AHNAK2 Nonsense_Mutation p.Q3863* 0.59 TCGA-D3-A51G-06 14 105414313 105414313 G A AHNAK2 Missense_Mutation p.S2492L 0.23 possibly_damaging(0.566) TCGA-D3-A51G-06 14 106321027 106321027 G A IGHM Missense_Mutation p.P321L 0.25 tolerated(0.09) benign(0.034) TCGA-D3-A51G-06 14 106471464 106471464 C T IGHV1-3 Missense_Mutation p.G45R 0.13 deleterious(0.02) possibly_damaging(0.885) TCGA-D3-A51G-06 14 106494423 106494423 C T IGHV2-5 Silent p.L23L 0.24 TCGA-D3-A51G-06 14 106791273 106791273 C T IGHV3-30 Missense_Mutation p.G28E 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D3-A51G-06 14 20216499 20216499 A G OR4Q3 Missense_Mutation p.K305E 0.31 deleterious(0.01) benign(0.202) TCGA-D3-A51G-06 14 20404336 20404336 C T OR4K1 Missense_Mutation p.P171S 0.48 deleterious(0.03) probably_damaging(1) TCGA-D3-A51G-06 14 20692623 20692623 G A OR11H6 Missense_Mutation p.R252Q 0.28 tolerated(0.11) benign(0.046) TCGA-D3-A51G-06 14 20848538 20848538 T C TEP1 Missense_Mutation p.Y1620C 0.70 deleterious(0.02) probably_damaging(0.935) TCGA-D3-A51G-06 14 21870592 21870592 G A CHD8 Missense_Mutation p.S1262F 0.18 deleterious(0) probably_damaging(0.991) TCGA-D3-A51G-06 14 22409792 22409792 G A TRAV9-2 Silent p.L94L 0.52 TCGA-D3-A51G-06 14 22509297 22509297 G A TRAV20 Missense_Mutation p.E79K 0.77 tolerated(0.27) benign(0.005) TCGA-D3-A51G-06 14 22694863 22694863 G A TRAV36DV7 Nonsense_Mutation p.W18* 0.63 TCGA-D3-A51G-06 14 23518287 23518287 G A CDH24 Missense_Mutation p.L637F 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 14 23817500 23817500 G A SLC22A17 Silent p.F236F 0.48 TCGA-D3-A51G-06 14 23938907 23938907 G A NGDN 5'UTR 0.52 TCGA-D3-A51G-06 14 24877295 24877295 G A NYNRIN Missense_Mutation p.R140Q 0.69 tolerated_low_confidence(0.05) benign(0.116) TCGA-D3-A51G-06 14 28733737 28733737 C T BNIP3P1 RNA 0.29 TCGA-D3-A51G-06 14 36841045 36841045 C T DPPA3P2 RNA 0.54 TCGA-D3-A51G-06 14 44974480 44974480 C T FSCB Missense_Mutation p.E571K 0.26 deleterious(0.04) possibly_damaging(0.583) TCGA-D3-A51G-06 14 45665628 45665628 G A FANCM Missense_Mutation p.R1865K 0.58 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 14 51239808 51239808 G A NIN Silent p.L224L 0.58 TCGA-D3-A51G-06 14 52741455 52741455 G C PTGDR Missense_Mutation p.A285P 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A51G-06 14 53066870 53066870 C T GPR137C Silent p.L176L 0.51 TCGA-D3-A51G-06 14 55310421 55310421 A G GCH1 3'UTR 0.27 TCGA-D3-A51G-06 14 55637460 55637460 G A DLGAP5 Silent p.F449F 0.59 TCGA-D3-A51G-06 14 58604962 58604962 C T C14orf37 Missense_Mutation p.G372E 0.47 tolerated(0.19) probably_damaging(0.969) TCGA-D3-A51G-06 14 58605935 58605935 C T C14orf37 Missense_Mutation p.D48N 0.23 deleterious(0) possibly_damaging(0.741) TCGA-D3-A51G-06 14 59113512 59113512 C T DACT1 Missense_Mutation p.S724F 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 14 63174481 63174481 C T KCNH5 Silent p.Q904Q 0.28 TCGA-D3-A51G-06 14 63447746 63447746 G A KCNH5 Silent p.I262I 0.24 TCGA-D3-A51G-06 14 63447818 63447818 G A KCNH5 Silent p.F238F 0.58 TCGA-D3-A51G-06 14 65008503 65008503 C T HSPA2 Silent p.L312L 0.21 TCGA-D3-A51G-06 14 67940647 67940647 G A TMEM229B 5'UTR 0.75 TCGA-D3-A51G-06 14 68028984 68028984 G A PLEKHH1 Silent p.K212K 0.50 TCGA-D3-A51G-06 14 72818806 72818806 G A RGS6 Missense_Mutation p.E30K 0.25 deleterious(0) possibly_damaging(0.84) TCGA-D3-A51G-06 14 74486181 74486181 G A CCDC176 5'UTR 0.17 TCGA-D3-A51G-06 14 74824785 74824785 G A VRTN Silent p.R433R 0.57 TCGA-D3-A51G-06 14 75988976 75988976 G A BATF 5'UTR 0.22 TCGA-D3-A51G-06 14 76349196 76349196 C T TTLL5 Missense_Mutation p.P1231S 0.21 tolerated_low_confidence(0.85) benign(0) TCGA-D3-A51G-06 14 76452105 76452105 G A IFT43 5'Flank 0.45 TCGA-D3-A51G-06 14 76905809 76905809 C T ESRRB Missense_Mutation p.S38L 0.22 deleterious(0.04) benign(0.023) TCGA-D3-A51G-06 14 77304240 77304240 G A C14orf166B Missense_Mutation p.G174D 0.42 tolerated(0.23) benign(0.04) TCGA-D3-A51G-06 14 77734832 77734832 C T NGB Missense_Mutation p.G100S 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 14 77928548 77928548 C T AHSA1 Missense_Mutation p.P106L 0.55 tolerated(0.06) possibly_damaging(0.591) TCGA-D3-A51G-06 14 77941982 77941982 C T ISM2 Missense_Mutation p.E558K 0.61 deleterious(0) unknown(0) TCGA-D3-A51G-06 14 78392252 78392252 C T ADCK1 Missense_Mutation p.S385L 0.22 deleterious(0) possibly_damaging(0.852) TCGA-D3-A51G-06 14 80271462 80271462 C T NRXN3 Missense_Mutation p.S938L 0.21 tolerated(0.08) benign(0.009) TCGA-D3-A51G-06 14 88477394 88477394 C T GPR65 Missense_Mutation p.P68L 0.61 deleterious(0.01) possibly_damaging(0.489) TCGA-D3-A51G-06 14 89016844 89016844 G A PTPN21 5'UTR 0.45 TCGA-D3-A51G-06 14 91007886 91007886 G A TTC7B Silent p.I786I 0.43 TCGA-D3-A51G-06 14 93397784 93397784 A G CHGA Missense_Mutation p.N182S 0.15 tolerated(0.07) benign(0.019) TCGA-D3-A51G-06 14 94156490 94156490 C T UNC79 Silent p.S2233S 0.61 TCGA-D3-A51G-06 14 94526551 94526551 G A DDX24 Silent p.R602R 0.31 TCGA-D3-A51G-06 14 94752523 94752523 C T SERPINA10 Missense_Mutation p.M355I 0.28 tolerated(0.08) benign(0.347) TCGA-D3-A51G-06 14 95030284 95030284 C T SERPINA4 Silent p.F155F 0.22 TCGA-D3-A51G-06 14 95081354 95081354 C T SERPINA3 Silent p.I192I 0.25 TCGA-D3-A51G-06 14 95679660 95679660 G A CLMN Silent p.S168S 0.60 TCGA-D3-A51G-06 14 96180290 96180290 G A TCL1A Silent p.T38T 0.26 TCGA-D3-A51G-06 14 96773201 96773201 G A ATG2B Silent p.F1452F 0.59 TCGA-D3-A51G-06 14 99641003 99641003 C T BCL11B Missense_Mutation p.D724N 0.18 deleterious(0.05) benign(0.103) TCGA-D3-A51G-06 15 21071261 21071261 C T POTEB2 Missense_Mutation p.R117K 0.30 tolerated(1) possibly_damaging(0.87) TCGA-D3-A51G-06 15 22369074 22369074 C T OR4M2 Missense_Mutation p.P167S 0.70 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 15 23300012 23300012 G A HERC2P2 RNA 0.91 TCGA-D3-A51G-06 15 25427444 25427444 C T SNORD115-6 3'Flank 0.85 TCGA-D3-A51G-06 15 25465684 25465684 G A SNORD115-27 RNA 0.77 TCGA-D3-A51G-06 15 26026306 26026306 G A ATP10A Missense_Mutation p.R172C 0.81 tolerated(0.14) benign(0.056) TCGA-D3-A51G-06 15 27128356 27128356 C T GABRA5 Silent p.F84F 0.84 TCGA-D3-A51G-06 15 33954796 33954796 G A RYR3 Missense_Mutation p.E1689K 0.84 benign(0.017) TCGA-D3-A51G-06 15 38786918 38786918 C T RASGRP1 Missense_Mutation p.G642S 0.86 tolerated(0.88) benign(0) TCGA-D3-A51G-06 15 42107506 42107506 C T MAPKBP1 Missense_Mutation p.S413F 0.82 deleterious(0) possibly_damaging(0.671) TCGA-D3-A51G-06 15 42702021 42702021 C T CAPN3 Missense_Mutation p.L677F 0.79 deleterious(0.03) probably_damaging(0.979) TCGA-D3-A51G-06 15 44778815 44778815 C T CTDSPL2 Missense_Mutation p.S131F 0.83 deleterious(0.02) benign(0.032) TCGA-D3-A51G-06 15 52179833 52179833 G A TMOD3 Missense_Mutation p.E111K 0.77 tolerated(0.07) possibly_damaging(0.842) TCGA-D3-A51G-06 15 52537603 52537603 G A MYO5C Missense_Mutation p.S709F 0.84 tolerated(0.09) possibly_damaging(0.528) TCGA-D3-A51G-06 15 52902542 52902542 G A FAM214A Missense_Mutation p.S190L 0.83 deleterious(0.03) benign(0.335) TCGA-D3-A51G-06 15 57745951 57745951 G A CGNL1 Missense_Mutation p.E709K 0.89 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A51G-06 15 64464058 64464058 G A CSNK1G1 3'UTR 0.75 TCGA-D3-A51G-06 15 65496853 65496853 G A CILP Silent p.F224F 0.82 TCGA-D3-A51G-06 15 65627166 65627166 G A IGDCC3 Silent p.L241L 0.81 TCGA-D3-A51G-06 15 67709361 67709361 G A IQCH Silent p.R730R 0.93 TCGA-D3-A51G-06 15 75585465 75585465 C G GOLGA6D Missense_Mutation p.T518R 0.38 deleterious(0.02) possibly_damaging(0.646) TCGA-D3-A51G-06 15 75982509 75982509 G A CSPG4 Silent p.S299S 0.85 TCGA-D3-A51G-06 15 78211645 78211645 G A RP11-114H24.7 Intron 0.92 TCGA-D3-A51G-06 15 79051797 79051797 G A ADAMTS7 Missense_Mutation p.P1676L 0.75 tolerated(0.1) benign(0.124) TCGA-D3-A51G-06 15 79748566 79748566 C A KIAA1024 Missense_Mutation p.S26Y 0.82 deleterious(0) possibly_damaging(0.905) TCGA-D3-A51G-06 15 90349308 90349308 G A ANPEP Silent p.S169S 0.82 TCGA-D3-A51G-06 16 10274119 10274119 T C GRIN2A Silent p.E50E 0.30 TCGA-D3-A51G-06 16 1261735 1261735 T G CACNA1H Missense_Mutation p.V1499G 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 16 1265070 1265070 C T CACNA1H Silent p.F1676F 0.52 TCGA-D3-A51G-06 16 1272654 1272654 C T TPSG1 Missense_Mutation p.G170E 0.41 tolerated(0.07) possibly_damaging(0.648) TCGA-D3-A51G-06 16 12758944 12758944 G A CPPED1 Silent p.Y248Y 0.50 TCGA-D3-A51G-06 16 1392220 1392220 G A BAIAP3 Missense_Mutation p.G333E 0.33 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 16 14947797 14947797 C T NOMO1 Missense_Mutation p.P293S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 16 15224982 15224982 G A RP11-1186N24.5 RNA 0.44 TCGA-D3-A51G-06 16 1537667 1537667 G A PTX4 Missense_Mutation p.A144V 0.34 tolerated(0.06) possibly_damaging(0.745) TCGA-D3-A51G-06 16 15854450 15854450 G A MYH11 Missense_Mutation p.P406S 0.42 probably_damaging(1) TCGA-D3-A51G-06 16 16302617 16302617 C T ABCC6 Silent p.K254K 0.45 TCGA-D3-A51G-06 16 1813667 1813667 G A MAPK8IP3 Silent p.T635T 0.60 TCGA-D3-A51G-06 16 19049269 19049269 C T TMC7 Missense_Mutation p.S360F 0.46 tolerated(0.22) benign(0.008) TCGA-D3-A51G-06 16 19451432 19451432 C T TMC5 Silent p.N24N 0.38 TCGA-D3-A51G-06 16 19729578 19729578 C T IQCK 5'UTR 0.33 TCGA-D3-A51G-06 16 20380832 20380832 G A PDILT Silent p.F366F 0.43 TCGA-D3-A51G-06 16 20422901 20422901 C T ACSM5 Missense_Mutation p.P32L 0.36 tolerated(0.16) benign(0.002) TCGA-D3-A51G-06 16 20976118 20976118 C T DNAH3 Missense_Mutation p.D3030N 0.27 tolerated(0.25) benign(0.002) TCGA-D3-A51G-06 16 2164565 2164565 G A PKD1 Missense_Mutation p.P820L 0.33 benign(0.043) TCGA-D3-A51G-06 16 21854860 21854860 G A NPIPB4 Missense_Mutation p.S131F 0.23 benign(0.202) TCGA-D3-A51G-06 16 2235405 2235405 G A CASKIN1 Silent p.S351S 0.55 TCGA-D3-A51G-06 16 2256079 2256079 G A MLST8 5'UTR 0.48 TCGA-D3-A51G-06 16 23712304 23712304 C T ERN2 Silent p.G493G 0.35 TCGA-D3-A51G-06 16 23718370 23718370 G A ERN2 Missense_Mutation p.H161Y 0.44 deleterious(0.03) possibly_damaging(0.628) TCGA-D3-A51G-06 16 24267957 24267957 A G CACNG3 5'UTR 0.33 TCGA-D3-A51G-06 16 2514159 2514159 C T C16orf59 Nonsense_Mutation p.Q362* 0.48 TCGA-D3-A51G-06 16 25228627 25228627 G A AQP8 Missense_Mutation p.E41K 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 16 25251568 25251568 G A ZKSCAN2 Missense_Mutation p.H825Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 16 27353522 27353522 C T IL4R Missense_Mutation p.P51S 0.37 deleterious(0.04) probably_damaging(0.945) TCGA-D3-A51G-06 16 29996879 29996879 C T TAOK2 Missense_Mutation p.R590C 0.32 tolerated(0.18) probably_damaging(0.986) TCGA-D3-A51G-06 16 29999175 29999175 C T TAOK2 Silent p.I1194I 0.45 TCGA-D3-A51G-06 16 30972806 30972806 C T SETD1A Silent p.L155L 0.37 TCGA-D3-A51G-06 16 30978285 30978285 C T SETD1A Silent p.S862S 0.40 TCGA-D3-A51G-06 16 31202348 31202348 C T FUS Silent p.G486G 0.39 TCGA-D3-A51G-06 16 31230802 31230802 G A TRIM72 Missense_Mutation p.E227K 0.36 tolerated(0.07) benign(0.002) TCGA-D3-A51G-06 16 31383763 31383763 C T ITGAX Missense_Mutation p.P742L 0.39 deleterious(0) probably_damaging(0.968) TCGA-D3-A51G-06 16 31391630 31391630 C T ITGAX Missense_Mutation p.P1035L 0.46 deleterious(0.05) probably_damaging(0.997) TCGA-D3-A51G-06 16 31422168 31422168 G A ITGAD Nonsense_Mutation p.W442* 0.40 TCGA-D3-A51G-06 16 31477864 31477864 C T ARMC5 Missense_Mutation p.P821L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51G-06 16 3614473 3614473 C T NLRC3 Silent p.V202V 0.37 TCGA-D3-A51G-06 16 3794898 3794898 T A CREBBP Nonsense_Mutation p.K1327* 0.45 TCGA-D3-A51G-06 16 4411248 4411248 A G CORO7 Silent p.A563A 0.49 TCGA-D3-A51G-06 16 4411249 4411249 G A CORO7 Missense_Mutation p.A563V 0.47 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A51G-06 16 46943618 46943618 C T GPT2 Missense_Mutation p.S200F 0.55 tolerated(0.19) benign(0.385) TCGA-D3-A51G-06 16 4731625 4731625 C T MGRN1 Silent p.S402S 0.40 TCGA-D3-A51G-06 16 4851312 4851312 C T ROGDI Missense_Mutation p.V71M 0.52 deleterious(0) probably_damaging(0.985) TCGA-D3-A51G-06 16 4902780 4902780 C T UBN1 5'UTR 0.40 TCGA-D3-A51G-06 16 4935290 4935290 C T PPL Silent p.K1122K 0.48 TCGA-D3-A51G-06 16 49671830 49671830 G A ZNF423 Silent p.C411C 0.49 TCGA-D3-A51G-06 16 50707697 50707697 C T SNX20 Missense_Mutation p.E191K 0.64 tolerated(0.08) benign(0.187) TCGA-D3-A51G-06 16 55518029 55518029 G A MMP2 Missense_Mutation p.R161Q 0.38 tolerated(0.1) probably_damaging(0.952) TCGA-D3-A51G-06 16 55719064 55719064 C T SLC6A2 Silent p.V218V 0.20 TCGA-D3-A51G-06 16 56396323 56396323 C T AMFR 3'UTR 0.47 TCGA-D3-A51G-06 16 56659751 56659751 C T MT1E 5'UTR 0.46 TCGA-D3-A51G-06 16 56659752 56659752 C T MT1E 5'UTR 0.46 TCGA-D3-A51G-06 16 57492195 57492195 C T COQ9 Missense_Mutation p.S215F 0.40 deleterious(0.04) possibly_damaging(0.537) TCGA-D3-A51G-06 16 61823307 61823307 G A CDH8 Missense_Mutation p.P453S 0.33 tolerated(0.38) benign(0.355) TCGA-D3-A51G-06 16 66423333 66423333 G A CDH5 Missense_Mutation p.R230Q 0.44 tolerated(0.1) benign(0.037) TCGA-D3-A51G-06 16 66947073 66947073 G A CDH16 Missense_Mutation p.R339C 0.36 tolerated(0.05) possibly_damaging(0.696) TCGA-D3-A51G-06 16 66998292 66998292 G C CES3 Missense_Mutation p.G198A 0.42 tolerated(0.08) possibly_damaging(0.501) TCGA-D3-A51G-06 16 67964466 67964466 G A CTRL Missense_Mutation p.S115F 0.47 tolerated(0.7) benign(0.293) TCGA-D3-A51G-06 16 68109264 68109264 C A DUS2 Silent p.A313A 0.38 TCGA-D3-A51G-06 16 69726657 69726657 C T NFAT5 Missense_Mutation p.P977S 0.36 benign(0.009) TCGA-D3-A51G-06 16 70954523 70954523 C T HYDIN Missense_Mutation p.E2586K 0.30 possibly_damaging(0.801) TCGA-D3-A51G-06 16 70954605 70954605 C T HYDIN Silent p.G2558G 0.36 TCGA-D3-A51G-06 16 71218807 71218807 G A HYDIN Silent p.I74I 0.42 TCGA-D3-A51G-06 16 71609891 71609891 C T TAT Missense_Mutation p.E92K 0.49 tolerated(0.59) benign(0.127) TCGA-D3-A51G-06 16 72832254 72832254 C T ZFHX3 Missense_Mutation p.A1443T 0.41 probably_damaging(0.98) TCGA-D3-A51G-06 16 75276760 75276760 T C BCAR1 Missense_Mutation p.T127A 0.08 tolerated(0.51) benign(0.001) TCGA-D3-A51G-06 16 81077931 81077931 C T ATMIN Missense_Mutation p.R610C 0.51 deleterious(0.05) benign(0.043) TCGA-D3-A51G-06 16 82124623 82124623 C T HSD17B2 Nonsense_Mutation p.Q261* 0.30 TCGA-D3-A51G-06 16 84163306 84163306 G A HSDL1 Silent p.I247I 0.16 TCGA-D3-A51G-06 16 84230343 84230343 C T ADAD2 Silent p.L621L 0.35 TCGA-D3-A51G-06 16 88901703 88901703 G A GALNS Silent p.L272L 0.48 TCGA-D3-A51G-06 16 89180863 89180863 C T ACSF3 Missense_Mutation p.S365F 0.37 deleterious(0) probably_damaging(0.992) TCGA-D3-A51G-06 17 10222145 10222145 C T MYH13 Missense_Mutation p.D1234N 0.52 deleterious(0) possibly_damaging(0.687) TCGA-D3-A51G-06 17 10265785 10265785 C T MYH13 Missense_Mutation p.M80I 0.80 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A51G-06 17 10360776 10360776 G A MYH4 Silent p.L620L 0.75 TCGA-D3-A51G-06 17 10545580 10545580 G A MYH3 Nonsense_Mutation p.Q646* 0.55 TCGA-D3-A51G-06 17 26864394 26864394 G A FOXN1 Silent p.T629T 0.92 TCGA-D3-A51G-06 17 26900845 26900845 C T ALDOC Missense_Mutation p.G303R 0.81 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 17 26918885 26918885 G A SPAG5 Missense_Mutation p.P423L 0.67 deleterious(0.01) probably_damaging(0.951) TCGA-D3-A51G-06 17 27284389 27284389 C T SEZ6 Missense_Mutation p.S824N 0.75 tolerated(0.07) possibly_damaging(0.679) TCGA-D3-A51G-06 17 3029915 3029915 G A OR1G1 Missense_Mutation p.H311Y 0.82 tolerated(1) benign(0.068) TCGA-D3-A51G-06 17 36453038 36453038 G A MRPL45 5'UTR 0.93 TCGA-D3-A51G-06 17 37264482 37264482 C T PLXDC1 Silent p.G162G 0.12 TCGA-D3-A51G-06 17 37922292 37922292 G A IKZF3 Silent p.L427L 0.83 TCGA-D3-A51G-06 17 39966033 39966033 G A LEPREL4 Missense_Mutation p.P281S 0.83 deleterious(0) possibly_damaging(0.894) TCGA-D3-A51G-06 17 40327692 40327692 G A KCNH4 Missense_Mutation p.R298C 0.88 deleterious(0) possibly_damaging(0.673) TCGA-D3-A51G-06 17 40343155 40343155 G A GHDC Silent p.I321I 0.53 TCGA-D3-A51G-06 17 43911173 43911173 G A CRHR1 Silent p.R370R 0.84 TCGA-D3-A51G-06 17 47394241 47394241 G A ZNF652 Silent p.L283L 0.76 TCGA-D3-A51G-06 17 48753756 48753756 C T ABCC3 Missense_Mutation p.T1062I 0.77 deleterious(0.05) possibly_damaging(0.864) TCGA-D3-A51G-06 17 5058900 5058900 C T USP6 Missense_Mutation p.R943C 0.89 tolerated_low_confidence(1) benign(0.004) TCGA-D3-A51G-06 17 54526448 54526448 G A ANKFN1 Missense_Mutation p.D373N 0.82 deleterious(0) benign(0.203) TCGA-D3-A51G-06 17 56349180 56349180 C T MPO Silent p.R622R 0.80 TCGA-D3-A51G-06 17 56403074 56403074 C T BZRAP1 Missense_Mutation p.V191M 0.47 deleterious(0) probably_damaging(0.928) TCGA-D3-A51G-06 17 56403075 56403075 C T BZRAP1 Splice_Site p.X191_splice 0.47 TCGA-D3-A51G-06 17 56573456 56573456 G A MTMR4 Nonsense_Mutation p.Q683* 0.89 TCGA-D3-A51G-06 17 59886056 59886056 C T BRIP1 Silent p.S230S 0.84 TCGA-D3-A51G-06 17 618089 618089 G A VPS53 5'UTR 0.80 TCGA-D3-A51G-06 17 67297289 67297289 C T ABCA5 Missense_Mutation p.V420I 0.70 tolerated(0.11) benign(0.176) TCGA-D3-A51G-06 17 6905007 6905007 G A ALOX12 Nonsense_Mutation p.W346* 0.89 TCGA-D3-A51G-06 17 7247260 7247260 G A ACAP1 Silent p.K218K 0.69 TCGA-D3-A51G-06 17 72473631 72473631 C T CD300A Missense_Mutation p.S197F 0.24 deleterious(0) probably_damaging(0.974) TCGA-D3-A51G-06 17 72699273 72699273 G A CD300LF Intron 0.88 TCGA-D3-A51G-06 17 72699274 72699274 G A CD300LF Intron 0.88 TCGA-D3-A51G-06 17 73493244 73493244 C T KIAA0195 Silent p.I1124I 0.20 TCGA-D3-A51G-06 17 73744962 73744962 G A ITGB4 Missense_Mutation p.G1051E 0.56 deleterious(0.03) benign(0.248) TCGA-D3-A51G-06 17 73744963 73744963 G A ITGB4 Silent p.G1051G 0.53 TCGA-D3-A51G-06 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.81 TCGA-D3-A51G-06 17 76499012 76499012 C T DNAH17 Missense_Mutation p.E1676K 0.89 possibly_damaging(0.554) TCGA-D3-A51G-06 17 76503639 76503639 G A DNAH17 Silent p.T1491T 0.75 TCGA-D3-A51G-06 17 76563176 76563176 G A DNAH17 Missense_Mutation p.L453F 0.88 benign(0.414) TCGA-D3-A51G-06 17 7802801 7802801 G T CHD3 Missense_Mutation p.E887D 0.82 possibly_damaging(0.523) TCGA-D3-A51G-06 17 79478295 79478295 C T ACTG1 Missense_Mutation p.E241K 0.28 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-D3-A51G-06 17 79609460 79609460 C T TSPAN10 Missense_Mutation p.P8S 0.80 deleterious(0.02) possibly_damaging(0.803) TCGA-D3-A51G-06 17 79650875 79650875 G A ARL16 5'UTR 0.75 TCGA-D3-A51G-06 18 10680308 10680308 C T PIEZO2 Missense_Mutation p.G2501R 0.44 deleterious(0) possibly_damaging(0.814) TCGA-D3-A51G-06 18 118365 118365 T C ROCK1P1 RNA 0.28 TCGA-D3-A51G-06 18 12274179 12274179 G A CIDEA Missense_Mutation p.D140N 0.47 deleterious(0) probably_damaging(0.947) TCGA-D3-A51G-06 18 14537894 14537894 C T POTEC Missense_Mutation p.G239E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51G-06 18 14542653 14542653 C T POTEC Missense_Mutation p.D165N 0.35 tolerated(0.1) probably_damaging(0.989) TCGA-D3-A51G-06 18 19282284 19282284 C T ABHD3 Missense_Mutation p.G168R 0.35 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 18 28992914 28992914 G A DSG4 Missense_Mutation p.D846N 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 18 31323747 31323747 C T ASXL3 Missense_Mutation p.S1312F 0.36 benign(0.429) TCGA-D3-A51G-06 18 31323748 31323748 C T ASXL3 Silent p.S1312S 0.37 TCGA-D3-A51G-06 18 32844175 32844175 G A ZSCAN30 Missense_Mutation p.R48W 0.45 deleterious(0) probably_damaging(0.987) TCGA-D3-A51G-06 18 42532419 42532419 C T SETBP1 Silent p.F1038F 0.49 TCGA-D3-A51G-06 18 45555832 45555832 C T ZBTB7C Silent p.E553E 0.74 TCGA-D3-A51G-06 18 47016828 47016828 A C RPL17 Missense_Mutation p.L104R 0.43 deleterious(0.04) benign(0.022) TCGA-D3-A51G-06 18 47566585 47566585 G A MYO5B Missense_Mutation p.L80F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 18 50278642 50278642 C T DCC Missense_Mutation p.H104Y 0.33 deleterious(0) probably_damaging(0.936) TCGA-D3-A51G-06 18 51863496 51863496 G A STARD6 Missense_Mutation p.S89L 0.45 tolerated(0.17) benign(0.016) TCGA-D3-A51G-06 18 54814883 54814883 G A BOD1L2 Missense_Mutation p.A114T 0.36 tolerated(0.43) benign(0.304) TCGA-D3-A51G-06 18 56184364 56184364 G A ALPK2 Missense_Mutation p.H1906Y 0.31 tolerated(0.19) benign(0.173) TCGA-D3-A51G-06 18 56586122 56586122 T C ZNF532 Silent p.V201V 0.45 TCGA-D3-A51G-06 18 61262351 61262351 T C SERPINB13 Missense_Mutation p.I235T 0.45 deleterious(0) probably_damaging(0.957) TCGA-D3-A51G-06 18 61564346 61564346 C T SERPINB2 Missense_Mutation p.H104Y 0.29 deleterious(0.03) possibly_damaging(0.791) TCGA-D3-A51G-06 18 74074486 74074486 G T ZNF516 Silent p.T1153T 0.38 TCGA-D3-A51G-06 18 74592081 74592081 C T ZNF236 Nonsense_Mutation p.Q331* 0.40 TCGA-D3-A51G-06 18 76753131 76753131 C T SALL3 Silent p.I380I 0.46 TCGA-D3-A51G-06 19 10089914 10089914 C T COL5A3 Missense_Mutation p.G923E 0.66 unknown(0) TCGA-D3-A51G-06 19 1041590 1041590 G C ABCA7 Missense_Mutation p.E50Q 0.42 tolerated(0.18) possibly_damaging(0.876) TCGA-D3-A51G-06 19 1051561 1051561 G A ABCA7 Missense_Mutation p.E980K 0.58 deleterious(0) probably_damaging(0.927) TCGA-D3-A51G-06 19 1110855 1110855 G - SBNO2 Frame_Shift_Del p.L973Wfs*76 0.26 TCGA-D3-A51G-06 19 11658686 11658686 G A CNN1 Silent p.G155G 0.42 TCGA-D3-A51G-06 19 12060846 12060846 G A ZNF700 Silent p.K669K 0.69 TCGA-D3-A51G-06 19 12868835 12868835 C T BEST2 Missense_Mutation p.P492S 0.50 tolerated_low_confidence(0.06) benign(0.167) TCGA-D3-A51G-06 19 1438409 1438409 C T RPS15 5'UTR 0.25 TCGA-D3-A51G-06 19 14991802 14991802 C G OR7A17 Silent p.R122R 0.36 TCGA-D3-A51G-06 19 15536418 15536418 G A WIZ Missense_Mutation p.L415F 0.44 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 19 15564052 15564052 G A RASAL3 Missense_Mutation p.P846S 0.33 tolerated(0.13) benign(0.019) TCGA-D3-A51G-06 19 15734183 15734183 G A CYP4F8 Intron 0.57 TCGA-D3-A51G-06 19 15752390 15752390 G A CYP4F3 Silent p.P55P 0.65 TCGA-D3-A51G-06 19 15756624 15756624 C T CYP4F3 Silent p.I98I 0.59 TCGA-D3-A51G-06 19 16791316 16791316 C T TMEM38A Silent p.I130I 0.26 TCGA-D3-A51G-06 19 16860305 16860305 G A NWD1 Silent p.L284L 0.27 TCGA-D3-A51G-06 19 17056389 17056389 C T CPAMD8 Silent p.V968V 0.53 TCGA-D3-A51G-06 19 17892535 17892535 C T FCHO1 Missense_Mutation p.P615S 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 19 18502756 18502756 G A LRRC25 3'UTR 0.44 TCGA-D3-A51G-06 19 18679506 18679506 C T KXD1 3'UTR 0.53 TCGA-D3-A51G-06 19 19112442 19112442 G A SUGP2 Missense_Mutation p.R991C 0.75 tolerated(0.23) benign(0.066) TCGA-D3-A51G-06 19 20117129 20117129 C T ZNF682 Silent p.E394E 0.47 TCGA-D3-A51G-06 19 20229954 20229954 C T ZNF90 Missense_Mutation p.H531Y 0.46 deleterious(0.03) benign(0.036) TCGA-D3-A51G-06 19 2129389 2129389 G A AP3D1 Silent p.S220S 0.50 TCGA-D3-A51G-06 19 21300279 21300279 C T ZNF714 Missense_Mutation p.A270V 0.17 tolerated(0.17) benign(0.009) TCGA-D3-A51G-06 19 23990655 23990655 A G RPSAP58 5'UTR 0.28 TCGA-D3-A51G-06 19 24310674 24310674 T A ZNF254 Missense_Mutation p.H624Q 0.31 deleterious(0) possibly_damaging(0.493) TCGA-D3-A51G-06 19 2737140 2737140 C T SLC39A3 Missense_Mutation p.R39H 0.16 deleterious(0.04) benign(0.091) TCGA-D3-A51G-06 19 2834330 2834330 C T ZNF554 Missense_Mutation p.T366I 0.21 deleterious(0.05) probably_damaging(0.994) TCGA-D3-A51G-06 19 3179791 3179791 C T S1PR4 Missense_Mutation p.P334L 0.21 deleterious(0) probably_damaging(0.974) TCGA-D3-A51G-06 19 33499063 33499063 G A RHPN2 Missense_Mutation p.P206L 0.33 deleterious(0.01) possibly_damaging(0.449) TCGA-D3-A51G-06 19 35835990 35835990 G A CD22 Silent p.E723E 0.36 TCGA-D3-A51G-06 19 36002316 36002316 G A DMKN Silent p.S305S 0.24 TCGA-D3-A51G-06 19 36002317 36002317 G A DMKN Missense_Mutation p.S305F 0.23 deleterious(0.03) unknown(0) TCGA-D3-A51G-06 19 36029298 36029309 AATACATGGTCA - GAPDHS Splice_Site p.X112_splice 0.33 TCGA-D3-A51G-06 19 362368 362368 C T THEG Silent p.L324L 0.50 TCGA-D3-A51G-06 19 36339976 36339976 G A NPHS1 Missense_Mutation p.T305I 0.26 tolerated(0.13) benign(0.005) TCGA-D3-A51G-06 19 3656499 3656499 G A PIP5K1C Silent p.S175S 0.25 TCGA-D3-A51G-06 19 36884680 36884680 G A ZFP82 Missense_Mutation p.H188Y 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A51G-06 19 37118320 37118320 C T ZNF382 Silent p.L507L 0.20 TCGA-D3-A51G-06 19 3762665 3762665 G A MRPL54 5'UTR 0.53 TCGA-D3-A51G-06 19 38028341 38028341 G A ZNF793 Missense_Mutation p.G261R 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-D3-A51G-06 19 38028572 38028572 C T ZNF793 Missense_Mutation p.P338S 0.49 deleterious(0.03) benign(0.061) TCGA-D3-A51G-06 19 38188051 38188051 A C ZNF607 3'UTR 0.57 TCGA-D3-A51G-06 19 38262267 38262267 G A ZNF573 Missense_Mutation p.P47S 0.30 tolerated(0.22) benign(0.04) TCGA-D3-A51G-06 19 38692515 38692515 C T SIPA1L3 Silent p.V1666V 0.67 TCGA-D3-A51G-06 19 39013705 39013705 G A RYR1 Missense_Mutation p.E3433K 0.32 benign(0) TCGA-D3-A51G-06 19 3907898 3907898 G A ATCAY Missense_Mutation p.M175I 0.41 deleterious(0.05) benign(0.403) TCGA-D3-A51G-06 19 39232454 39232454 C T CAPN12 Missense_Mutation p.E175K 0.28 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 19 39308180 39308180 G A AC104534.3 Nonsense_Mutation p.Q299* 0.64 TCGA-D3-A51G-06 19 39734519 39734519 C T IFNL3 Missense_Mutation p.R146K 0.28 tolerated(0.08) benign(0.027) TCGA-D3-A51G-06 19 39880154 39880154 C T PAF1 Missense_Mutation p.E109K 0.26 deleterious(0) probably_damaging(0.954) TCGA-D3-A51G-06 19 40095307 40095307 C T LGALS13 Silent p.I27I 0.54 TCGA-D3-A51G-06 19 40354371 40354371 C T FCGBP Silent p.G5366G 0.19 TCGA-D3-A51G-06 19 40368695 40368695 C T FCGBP Missense_Mutation p.G4218D 0.11 probably_damaging(0.982) TCGA-D3-A51G-06 19 40433514 40433514 T A FCGBP Missense_Mutation p.Y252F 0.36 possibly_damaging(0.549) TCGA-D3-A51G-06 19 40433642 40433642 G A FCGBP Silent p.L209L 0.30 TCGA-D3-A51G-06 19 40540276 40540276 G A ZNF780B Silent p.F830F 0.31 TCGA-D3-A51G-06 19 40902447 40902447 T C PRX Silent p.Q604Q 0.58 TCGA-D3-A51G-06 19 41078007 41078007 A C SPTBN4 Missense_Mutation p.T2468P 0.54 tolerated(1) possibly_damaging(0.803) TCGA-D3-A51G-06 19 41381503 41381503 C T CYP2A7 3'UTR 0.31 TCGA-D3-A51G-06 19 41381504 41381504 C T CYP2A7 3'UTR 0.29 TCGA-D3-A51G-06 19 41497264 41497264 C T CYP2B6 Silent p.L18L 0.55 TCGA-D3-A51G-06 19 41759578 41759578 A G AXL Silent p.R667R 0.40 TCGA-D3-A51G-06 19 42795611 42795611 C T CIC Silent p.P897P 0.45 TCGA-D3-A51G-06 19 43257438 43257438 G A PSG8 3'Flank 0.12 TCGA-D3-A51G-06 19 43262328 43262328 G A PSG8 Silent p.L179L 0.36 TCGA-D3-A51G-06 19 43349399 43349399 C T PSG10P RNA 0.19 TCGA-D3-A51G-06 19 43372957 43372957 C T PSG1 Silent p.R313R 0.27 TCGA-D3-A51G-06 19 43373161 43373161 G T PSG1 Silent p.T245T 0.25 TCGA-D3-A51G-06 19 43383814 43383814 C T PSG1 5'UTR 0.65 TCGA-D3-A51G-06 19 43430821 43430821 C T PSG7 Missense_Mutation p.E253K 0.48 tolerated(0.25) probably_damaging(0.996) TCGA-D3-A51G-06 19 43757695 43757695 C T PSG9 3'UTR 0.33 TCGA-D3-A51G-06 19 43771950 43771950 G A PSG9 Missense_Mutation p.T139I 0.26 deleterious(0.03) benign(0.13) TCGA-D3-A51G-06 19 43773668 43773668 C T PSG9 5'UTR 0.63 TCGA-D3-A51G-06 19 44223753 44223753 C T IRGC Missense_Mutation p.S348F 0.45 deleterious(0.02) possibly_damaging(0.816) TCGA-D3-A51G-06 19 44590530 44590530 C T ZNF284 Missense_Mutation p.S300L 0.41 deleterious(0) possibly_damaging(0.611) TCGA-D3-A51G-06 19 46318389 46318389 G A RSPH6A Missense_Mutation p.P16S 0.56 tolerated_low_confidence(0.55) benign(0.001) TCGA-D3-A51G-06 19 46808528 46808528 G A HIF3A Missense_Mutation p.G82R 0.39 tolerated(0.26) possibly_damaging(0.766) TCGA-D3-A51G-06 19 47354105 47354105 G A AP2S1 5'UTR 0.55 TCGA-D3-A51G-06 19 47763920 47763920 C T CCDC9 Missense_Mutation p.P96S 0.47 tolerated(0.27) benign(0.022) TCGA-D3-A51G-06 19 4793789 4793789 C T FEM1A Silent p.C641C 0.50 TCGA-D3-A51G-06 19 48925100 48925100 C T GRIN2D Missense_Mutation p.S717F 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 19 48925101 48925101 C T GRIN2D Silent p.S717S 0.54 TCGA-D3-A51G-06 19 48967557 48967557 C T KCNJ14 Silent p.I278I 0.45 TCGA-D3-A51G-06 19 48977536 48977536 C T CYTH2 Silent p.A215A 0.42 TCGA-D3-A51G-06 19 49657810 49657810 C T HRC Missense_Mutation p.D229N 0.60 tolerated(0.14) benign(0.321) TCGA-D3-A51G-06 19 49935843 49935843 G A SLC17A7 Silent p.I361I 0.65 TCGA-D3-A51G-06 19 49949662 49949662 G A PIH1D1 Missense_Mutation p.P284S 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 19 50412606 50412606 G A NUP62 Silent p.T153T 0.27 TCGA-D3-A51G-06 19 50436081 50436081 C T ATF5 Missense_Mutation p.P194L 0.27 tolerated(0.37) benign(0.001) TCGA-D3-A51G-06 19 50881477 50881477 G A NR1H2 Missense_Mutation p.E85K 0.33 deleterious(0) possibly_damaging(0.901) TCGA-D3-A51G-06 19 50979171 50979171 G A FAM71E1 Silent p.P93P 0.48 TCGA-D3-A51G-06 19 50979490 50979490 G A FAM71E1 Silent p.L52L 0.23 TCGA-D3-A51G-06 19 51021653 51021653 C T LRRC4B Silent p.T439T 0.54 TCGA-D3-A51G-06 19 51483547 51483547 G A KLK7 Missense_Mutation p.P140S 0.47 tolerated(0.08) possibly_damaging(0.453) TCGA-D3-A51G-06 19 51582847 51582847 C T KLK14 Missense_Mutation p.D125N 0.29 tolerated(0.49) benign(0.325) TCGA-D3-A51G-06 19 51742905 51742905 G A CD33 Missense_Mutation p.D353N 0.23 tolerated(0.5) benign(0.077) TCGA-D3-A51G-06 19 51986412 51986412 C T CEACAM18 Missense_Mutation p.S333F 0.31 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 19 52034617 52034617 G A SIGLEC6 Missense_Mutation p.P75L 0.57 tolerated(0.19) possibly_damaging(0.904) TCGA-D3-A51G-06 19 52375986 52375986 G A ZNF577 Silent p.S419S 0.61 TCGA-D3-A51G-06 19 53270331 53270331 G A ZNF600 Silent p.S226S 0.44 TCGA-D3-A51G-06 19 53421117 53421117 G A ZNF888 RNA 0.70 TCGA-D3-A51G-06 19 53577486 53577486 A G ZNF160 Silent p.L60L 0.53 TCGA-D3-A51G-06 19 53770138 53770138 T A VN1R4 Missense_Mutation p.N261Y 0.26 tolerated(0.1) benign(0.251) TCGA-D3-A51G-06 19 53884473 53884473 C T ZNF525 Missense_Mutation p.S214F 0.59 deleterious(0.01) possibly_damaging(0.858) TCGA-D3-A51G-06 19 54600297 54600297 G A OSCAR Silent p.F79F 0.29 TCGA-D3-A51G-06 19 54710250 54710250 C T RPS9 Silent p.R109R 0.24 TCGA-D3-A51G-06 19 55086255 55086255 G A LILRA2 Missense_Mutation p.G137E 0.31 tolerated(0.09) probably_damaging(0.957) TCGA-D3-A51G-06 19 55098871 55098871 G A LILRA2 3'UTR 0.43 TCGA-D3-A51G-06 19 55107724 55107724 C T LILRA1 Silent p.T343T 0.42 TCGA-D3-A51G-06 19 55512302 55512302 G A NLRP2 3'UTR 0.27 TCGA-D3-A51G-06 19 56223859 56223859 C T NLRP9 Missense_Mutation p.E867K 0.27 tolerated(0.86) benign(0.026) TCGA-D3-A51G-06 19 56363594 56363594 G A NLRP4 Missense_Mutation p.A50T 0.46 deleterious(0) probably_damaging(0.912) TCGA-D3-A51G-06 19 56382202 56382202 C T NLRP4 Silent p.F788F 0.42 TCGA-D3-A51G-06 19 56515242 56515242 G A NLRP5 Missense_Mutation p.E75K 0.44 deleterious(0.01) probably_damaging(0.947) TCGA-D3-A51G-06 19 56572973 56572973 C T NLRP5 3'UTR 0.39 TCGA-D3-A51G-06 19 56701424 56701424 G A ZSCAN5B Silent p.F420F 0.51 TCGA-D3-A51G-06 19 56895279 56895279 C G ZNF582 Missense_Mutation p.A503P 0.40 tolerated(0.15) probably_damaging(0.99) TCGA-D3-A51G-06 19 57327492 57327492 G A PEG3 Missense_Mutation p.S773L 0.29 tolerated(0.1) benign(0.065) TCGA-D3-A51G-06 19 57666634 57666634 C T DUXA Splice_Site p.X182_splice 0.26 TCGA-D3-A51G-06 19 57988788 57988788 G A ZNF772 5'UTR 0.48 TCGA-D3-A51G-06 19 58059238 58059238 C T ZNF550 Missense_Mutation p.R84K 0.26 tolerated(0.1) benign(0.001) TCGA-D3-A51G-06 19 5844504 5844504 T C FUT3 Missense_Mutation p.N116S 0.56 tolerated(0.89) benign(0.007) TCGA-D3-A51G-06 19 58485727 58485727 G A C19orf18 Missense_Mutation p.P25L 0.63 deleterious(0.04) benign(0.001) TCGA-D3-A51G-06 19 58485728 58485728 G A C19orf18 Missense_Mutation p.P25S 0.63 tolerated(0.16) benign(0.052) TCGA-D3-A51G-06 19 58549279 58549279 C T ZSCAN1 Silent p.D25D 0.36 TCGA-D3-A51G-06 19 58549280 58549280 C T ZSCAN1 Missense_Mutation p.P26S 0.33 tolerated(0.95) benign(0.024) TCGA-D3-A51G-06 19 6479031 6479031 G A DENND1C Silent p.F71F 0.23 TCGA-D3-A51G-06 19 6897288 6897288 G A EMR1 Missense_Mutation p.G123R 0.36 tolerated(0.06) benign(0.111) TCGA-D3-A51G-06 19 7506650 7506650 A G ARHGEF18 Silent p.E218E 0.22 TCGA-D3-A51G-06 19 7584437 7584437 C T ZNF358 Silent p.P103P 0.28 TCGA-D3-A51G-06 19 7593125 7593125 C T MCOLN1 Missense_Mutation p.P287S 0.38 tolerated(0.4) benign(0.119) TCGA-D3-A51G-06 19 7712101 7712101 C T STXBP2 Silent p.P502P 0.47 TCGA-D3-A51G-06 19 7987561 7987561 C T SNAPC2 Missense_Mutation p.S306L 0.26 tolerated(0.2) benign(0.08) TCGA-D3-A51G-06 19 8138086 8138086 C T FBN3 Missense_Mutation p.D2600N 0.21 tolerated(0.31) benign(0.25) TCGA-D3-A51G-06 19 8160928 8160928 C T FBN3 Missense_Mutation p.G1859E 0.58 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 19 8367350 8367350 G A CD320 Silent p.P282P 0.19 TCGA-D3-A51G-06 19 8604862 8604862 C T MYO1F Missense_Mutation p.G554E 0.22 tolerated(0.05) benign(0.128) TCGA-D3-A51G-06 19 8808104 8808104 G A ACTL9 Silent p.S316S 0.24 TCGA-D3-A51G-06 19 8808646 8808646 C T ACTL9 Missense_Mutation p.D136N 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A51G-06 19 9046338 9046338 G A MUC16 Missense_Mutation p.P11765S 0.26 benign(0) TCGA-D3-A51G-06 19 9048429 9048429 C T MUC16 Missense_Mutation p.E11068K 0.22 benign(0.007) TCGA-D3-A51G-06 19 9058282 9058282 C T MUC16 Missense_Mutation p.E9722K 0.20 unknown(0) TCGA-D3-A51G-06 19 9059611 9059611 G A MUC16 Nonsense_Mutation p.Q9279* 0.55 TCGA-D3-A51G-06 19 9060263 9060263 C T MUC16 Silent p.V9061V 0.45 TCGA-D3-A51G-06 19 9064344 9064344 G A MUC16 Missense_Mutation p.P7701L 0.34 unknown(0) TCGA-D3-A51G-06 19 9064917 9064917 G A MUC16 Missense_Mutation p.T7510I 0.38 unknown(0) TCGA-D3-A51G-06 19 9067233 9067233 C T MUC16 Missense_Mutation p.R6738Q 0.21 unknown(0) TCGA-D3-A51G-06 19 9068743 9068743 G A MUC16 Missense_Mutation p.P6235S 0.52 unknown(0) TCGA-D3-A51G-06 19 9069352 9069352 G A MUC16 Missense_Mutation p.H6032Y 0.32 unknown(0) TCGA-D3-A51G-06 19 9087718 9087718 C T MUC16 Missense_Mutation p.G1366E 0.19 unknown(0) TCGA-D3-A51G-06 19 9226086 9226086 C T OR7G1 Missense_Mutation p.M118I 0.27 deleterious(0) probably_damaging(0.985) TCGA-D3-A51G-06 19 9491817 9491817 C T ZNF177 Silent p.S270S 0.42 TCGA-D3-A51G-06 19 9578569 9578569 C T ZNF560 Missense_Mutation p.E352K 0.53 tolerated(0.23) benign(0.029) TCGA-D3-A51G-06 19 9586036 9586036 C T ZNF560 5'UTR 0.18 TCGA-D3-A51G-06 19 9968508 9968508 G A OLFM2 Silent p.V81V 0.17 TCGA-D3-A51G-06 1 103461554 103461554 C T COL11A1 Silent p.R762R 0.72 TCGA-D3-A51G-06 1 10364096 10364096 C T KIF1B Intron 0.14 TCGA-D3-A51G-06 1 109813606 109813606 C T CELSR2 Missense_Mutation p.S2514F 0.15 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 1 110033817 110033817 C T ATXN7L2 Silent p.S544S 0.20 TCGA-D3-A51G-06 1 111060034 111060034 T C KCNA10 Missense_Mutation p.N459S 0.78 deleterious(0) probably_damaging(0.99) TCGA-D3-A51G-06 1 111968010 111968010 G A OVGP1 Silent p.T104T 0.67 TCGA-D3-A51G-06 1 112309187 112309187 C T DDX20 Missense_Mutation p.S714L 0.30 tolerated(0.48) benign(0.03) TCGA-D3-A51G-06 1 114523104 114523104 C T OLFML3 Missense_Mutation p.R89C 0.74 deleterious(0) probably_damaging(0.97) TCGA-D3-A51G-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.83 deleterious(0.01) benign(0.045) TCGA-D3-A51G-06 1 115428875 115428875 G A SYCP1 Missense_Mutation p.E379K 0.06 tolerated(0.14) benign(0.068) TCGA-D3-A51G-06 1 115527431 115527431 G A SYCP1 Missense_Mutation p.R882K 0.13 tolerated(0.14) benign(0.037) TCGA-D3-A51G-06 1 115576082 115576082 G A TSHB Silent p.R33R 0.67 TCGA-D3-A51G-06 1 116206695 116206695 C T VANGL1 Silent p.V206V 0.14 TCGA-D3-A51G-06 1 11718796 11718796 C T FBXO44 Silent p.F164F 0.19 TCGA-D3-A51G-06 1 1192649 1192649 G A UBE2J2 Missense_Mutation p.P88S 0.09 tolerated(0.06) possibly_damaging(0.831) TCGA-D3-A51G-06 1 119427481 119427481 C T TBX15 Silent p.G455G 0.12 TCGA-D3-A51G-06 1 120056908 120056908 C T HSD3B1 Silent p.Y254Y 0.76 TCGA-D3-A51G-06 1 1203260 1203260 G A UBE2J2 Missense_Mutation p.P38L 0.16 deleterious(0) probably_damaging(0.976) TCGA-D3-A51G-06 1 12711223 12711223 G A AADACL4 Missense_Mutation p.D84N 0.12 tolerated(0.18) benign(0.047) TCGA-D3-A51G-06 1 12855850 12855850 C T PRAMEF1 Missense_Mutation p.S377F 0.19 tolerated(0.2) benign(0.021) TCGA-D3-A51G-06 1 143767491 143767491 C T PPIAL4G Missense_Mutation p.E120K 0.21 deleterious_low_confidence(0.03) benign(0.35) TCGA-D3-A51G-06 1 145492376 145492376 G T LIX1L Splice_Site p.X199_splice 0.19 TCGA-D3-A51G-06 1 145537180 145537180 C T ITGA10 Missense_Mutation p.P784L 0.75 deleterious(0) possibly_damaging(0.9) TCGA-D3-A51G-06 1 146672834 146672834 C T FMO5 Silent p.L361L 0.10 TCGA-D3-A51G-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.13 TCGA-D3-A51G-06 1 149755592 149755592 C T FCGR1A Missense_Mutation p.P29L 0.47 deleterious(0) benign(0.103) TCGA-D3-A51G-06 1 149761663 149761663 G A FCGR1A Missense_Mutation p.G205R 0.12 tolerated(0.12) possibly_damaging(0.656) TCGA-D3-A51G-06 1 150117030 150117030 C T VPS45 3'UTR 0.83 TCGA-D3-A51G-06 1 150235700 150235700 G T CA14 Silent p.L241L 0.10 TCGA-D3-A51G-06 1 150238543 150238543 G A APH1A Missense_Mutation p.P262L 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A51G-06 1 151282724 151282724 G A PI4KB Missense_Mutation p.S318F 0.15 tolerated(0.23) benign(0.004) TCGA-D3-A51G-06 1 151826098 151826098 G A THEM5 5'UTR 0.81 TCGA-D3-A51G-06 1 152058866 152058866 C T TCHHL1 Missense_Mutation p.G431E 0.13 tolerated(1) benign(0.005) TCGA-D3-A51G-06 1 152275974 152275974 C T FLG Silent p.R3796R 0.13 TCGA-D3-A51G-06 1 152276059 152276059 C T FLG Missense_Mutation p.G3768E 0.15 unknown(0) TCGA-D3-A51G-06 1 152278586 152278586 C T FLG Missense_Mutation p.G2926S 0.33 benign(0.246) TCGA-D3-A51G-06 1 152732545 152732545 C T KPRP Missense_Mutation p.P161S 0.14 deleterious(0.05) benign(0.391) TCGA-D3-A51G-06 1 153084898 153084898 G A SPRR2F 3'UTR 0.72 TCGA-D3-A51G-06 1 154456717 154456717 C T SHE Missense_Mutation p.E466K 0.09 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 1 155030485 155030485 C T ADAM15 Silent p.A525A 0.70 TCGA-D3-A51G-06 1 155790414 155790414 C T GON4L Missense_Mutation p.V333I 0.22 deleterious(0.01) benign(0.198) TCGA-D3-A51G-06 1 155792082 155792082 G A GON4L Missense_Mutation p.L295F 0.14 deleterious(0.01) possibly_damaging(0.765) TCGA-D3-A51G-06 1 155796745 155796745 G A GON4L Nonsense_Mutation p.Q194* 0.76 TCGA-D3-A51G-06 1 156618407 156618407 G A BCAN Missense_Mutation p.A273T 0.70 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 156786498 156786498 C T SH2D2A Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-D3-A51G-06 1 156814378 156814378 C T INSRR Silent p.A871A 0.35 TCGA-D3-A51G-06 1 156879667 156879667 C T PEAR1 Silent p.T512T 0.11 TCGA-D3-A51G-06 1 158224896 158224896 C T CD1A Silent p.F27F 0.16 TCGA-D3-A51G-06 1 158300713 158300713 G A CD1B Silent p.F67F 0.75 TCGA-D3-A51G-06 1 158324322 158324322 G A CD1E Missense_Mutation p.G72S 0.72 deleterious(0.05) possibly_damaging(0.674) TCGA-D3-A51G-06 1 158450225 158450225 C T OR10R2 Silent p.L186L 0.28 TCGA-D3-A51G-06 1 15987492 15987492 G A RSC1A1 Missense_Mutation p.E377K 0.11 deleterious(0.01) benign(0.273) TCGA-D3-A51G-06 1 159888488 159888488 G A TAGLN2 3'UTR 0.24 TCGA-D3-A51G-06 1 159922202 159922202 G A SLAMF9 Missense_Mutation p.R172W 0.40 tolerated(0.26) benign(0) TCGA-D3-A51G-06 1 160106421 160106421 C T ATP1A2 Silent p.F875F 0.72 TCGA-D3-A51G-06 1 16257320 16257320 C T SPEN Missense_Mutation p.R1529C 0.15 probably_damaging(0.997) TCGA-D3-A51G-06 1 165218847 165218847 G A LMX1A Silent p.F98F 0.39 TCGA-D3-A51G-06 1 165677878 165677878 G A RP11-466F5.10 5'Flank 0.11 TCGA-D3-A51G-06 1 167792324 167792324 C A ADCY10 Nonsense_Mutation p.E1364* 0.68 TCGA-D3-A51G-06 1 16893772 16893772 G A NBPF1 Missense_Mutation p.P914L 0.07 tolerated(0.32) benign(0.39) TCGA-D3-A51G-06 1 169080704 169080704 A G ATP1B1 Missense_Mutation p.K65R 0.72 tolerated(0.08) benign(0.001) TCGA-D3-A51G-06 1 170699465 170699465 G A PRRX1 Intron 0.15 TCGA-D3-A51G-06 1 171249965 171249965 G A FMO1 Missense_Mutation p.R223Q 0.09 deleterious(0.04) benign(0.319) TCGA-D3-A51G-06 1 173842613 173842613 C T ZBTB37 Missense_Mutation p.P311L 0.06 deleterious(0) possibly_damaging(0.552) TCGA-D3-A51G-06 1 17397977 17397977 C T PADI2 Missense_Mutation p.G520E 0.77 tolerated(0.15) probably_damaging(0.979) TCGA-D3-A51G-06 1 174846621 174846621 C T RABGAP1L Intron 0.67 TCGA-D3-A51G-06 1 175048720 175048720 G A TNN Missense_Mutation p.E221K 0.85 tolerated(0.11) benign(0.009) TCGA-D3-A51G-06 1 17570710 17570710 C T PADI1 Missense_Mutation p.P655L 0.80 deleterious(0.01) benign(0.257) TCGA-D3-A51G-06 1 17593285 17593285 C T PADI3 Silent p.S160S 0.77 TCGA-D3-A51G-06 1 176659435 176659435 C T PAPPA2 Missense_Mutation p.T767M 0.63 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 1 176845698 176845698 G A ASTN1 Silent p.P1146P 0.12 TCGA-D3-A51G-06 1 178490396 178490396 C T TEX35 Missense_Mutation p.R195W 0.13 deleterious_low_confidence(0) benign(0.231) TCGA-D3-A51G-06 1 180017711 180017711 C T CEP350 Missense_Mutation p.P1555S 0.70 benign(0.028) TCGA-D3-A51G-06 1 18149678 18149678 C T ACTL8 Missense_Mutation p.H59Y 0.13 tolerated(0.69) benign(0.006) TCGA-D3-A51G-06 1 181686321 181686321 C T CACNA1E Missense_Mutation p.R470C 0.74 deleterious(0) possibly_damaging(0.689) TCGA-D3-A51G-06 1 182555559 182555559 G A RNASEL Missense_Mutation p.A128V 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 183857636 183857636 C T RGL1 Missense_Mutation p.S362F 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 1848607 1848607 G A CALML6 Missense_Mutation p.G174E 0.65 deleterious(0) probably_damaging(0.919) TCGA-D3-A51G-06 1 186114688 186114688 A G HMCN1 Missense_Mutation p.N4807S 0.26 probably_damaging(0.982) TCGA-D3-A51G-06 1 192548321 192548321 A G RGS1 Missense_Mutation p.T167A 0.13 deleterious(0.02) possibly_damaging(0.667) TCGA-D3-A51G-06 1 197898345 197898345 G A LHX9 Missense_Mutation p.E384K 0.17 deleterious(0.01) possibly_damaging(0.797) TCGA-D3-A51G-06 1 198725049 198725049 C T PTPRC Silent p.F1220F 0.83 TCGA-D3-A51G-06 1 201016683 201016683 G T CACNA1S Missense_Mutation p.L1505I 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A51G-06 1 201030572 201030572 G A CACNA1S Silent p.S1026S 0.22 TCGA-D3-A51G-06 1 201185595 201185595 C T IGFN1 Silent p.P3103P 0.70 TCGA-D3-A51G-06 1 201185596 201185596 C T IGFN1 Missense_Mutation p.P3104S 0.70 possibly_damaging(0.891) TCGA-D3-A51G-06 1 201293662 201293662 C T PKP1 Missense_Mutation p.S617F 0.12 deleterious(0) probably_damaging(0.919) TCGA-D3-A51G-06 1 202092431 202092431 C T GPR37L1 Silent p.L114L 0.12 TCGA-D3-A51G-06 1 202287272 202287272 C T LGR6 Missense_Mutation p.S614F 0.13 tolerated(0.63) possibly_damaging(0.703) TCGA-D3-A51G-06 1 203140584 203140584 G A MYBPH Silent p.D240D 0.15 TCGA-D3-A51G-06 1 20440510 20440510 C T PLA2G2D 3'UTR 0.45 TCGA-D3-A51G-06 1 20440511 20440511 C T PLA2G2D 3'UTR 0.47 TCGA-D3-A51G-06 1 205197873 205197873 C T TMCC2 Missense_Mutation p.P61S 0.13 tolerated_low_confidence(0.66) benign(0) TCGA-D3-A51G-06 1 205312494 205312494 C T KLHDC8A Missense_Mutation p.R80Q 0.13 tolerated(1) benign(0.091) TCGA-D3-A51G-06 1 205766063 205766063 G T SLC41A1 Missense_Mutation p.P354H 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 205890814 205890814 G A SLC26A9 Silent p.A645A 0.85 TCGA-D3-A51G-06 1 206632056 206632056 C T SRGAP2 Silent p.S779S 0.19 TCGA-D3-A51G-06 1 211192138 211192138 C T KCNH1 Missense_Mutation p.G340E 0.74 tolerated(0.28) benign(0.002) TCGA-D3-A51G-06 1 212119995 212119995 G A INTS7 Missense_Mutation p.S790F 0.10 deleterious(0.04) benign(0.2) TCGA-D3-A51G-06 1 212792763 212792763 G A ATF3 Missense_Mutation p.E138K 0.83 deleterious(0) benign(0.348) TCGA-D3-A51G-06 1 215963404 215963404 C T USH2A Missense_Mutation p.M3393I 0.07 benign(0.016) TCGA-D3-A51G-06 1 220777414 220777414 G A MARK1 Missense_Mutation p.V144I 0.77 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 1 224868683 224868683 G A CNIH3 Silent p.R35R 0.66 TCGA-D3-A51G-06 1 226825421 226825421 G A ITPKB Nonsense_Mutation p.R862* 0.27 TCGA-D3-A51G-06 1 227222395 227222395 G A CDC42BPA Missense_Mutation p.S1111F 0.12 deleterious(0) benign(0.382) TCGA-D3-A51G-06 1 228506837 228506837 C T OBSCN Missense_Mutation p.T5752I 0.74 probably_damaging(0.993) TCGA-D3-A51G-06 1 233514713 233514713 T A MLK4 Nonsense_Mutation p.L654* 0.16 TCGA-D3-A51G-06 1 235973317 235973317 T C LYST Silent p.K267K 0.67 TCGA-D3-A51G-06 1 237893645 237893645 G A RYR2 Missense_Mutation p.E3642K 0.85 benign(0.005) TCGA-D3-A51G-06 1 240071520 240071520 G A CHRM3 Missense_Mutation p.E257K 0.72 deleterious(0) possibly_damaging(0.814) TCGA-D3-A51G-06 1 241262022 241262022 C T RGS7 Missense_Mutation p.G40E 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 1 241904893 241904893 G A WDR64 Missense_Mutation p.R456Q 0.64 tolerated(0.09) benign(0.06) TCGA-D3-A51G-06 1 24401909 24401909 C T MYOM3 Missense_Mutation p.E920K 0.71 deleterious(0) probably_damaging(0.987) TCGA-D3-A51G-06 1 24406673 24406673 C T MYOM3 Missense_Mutation p.D807N 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A51G-06 1 247201497 247201497 G A ZNF670 Missense_Mutation p.H142Y 0.08 deleterious(0.02) benign(0.121) TCGA-D3-A51G-06 1 247588913 247588913 C T NLRP3 Intron 0.76 TCGA-D3-A51G-06 1 247751917 247751917 G A OR2G2 Missense_Mutation p.V86I 0.12 tolerated(0.16) benign(0.081) TCGA-D3-A51G-06 1 247835887 247835887 A C OR13G1 Missense_Mutation p.S153A 0.18 tolerated(0.38) benign(0.064) TCGA-D3-A51G-06 1 247875554 247875554 G A OR6F1 Silent p.F168F 0.75 TCGA-D3-A51G-06 1 247921066 247921066 G A OR1C1 Missense_Mutation p.L215F 0.62 deleterious(0.02) possibly_damaging(0.657) TCGA-D3-A51G-06 1 248112288 248112288 C T OR2L8 Silent p.S43S 0.14 TCGA-D3-A51G-06 1 248263377 248263377 A C OR2L13 Missense_Mutation p.K234Q 0.73 tolerated(0.06) benign(0.101) TCGA-D3-A51G-06 1 2523050 2523050 G A MMEL1 Missense_Mutation p.P729L 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 26013026 26013026 C T MAN1C1 Silent p.F212F 0.74 TCGA-D3-A51G-06 1 26688453 26688453 C T ZNF683 Missense_Mutation p.G402R 0.40 tolerated(0.05) benign(0.271) TCGA-D3-A51G-06 1 27210668 27210668 G A GPN2 Silent p.A281A 0.38 TCGA-D3-A51G-06 1 27210669 27210669 G A GPN2 Missense_Mutation p.A281V 0.39 tolerated(0.15) benign(0.298) TCGA-D3-A51G-06 1 28285118 28285118 G A SMPDL3B Silent p.L379L 0.76 TCGA-D3-A51G-06 1 29030840 29030840 A T GMEB1 Silent p.T299T 0.05 TCGA-D3-A51G-06 1 29581913 29581913 C T PTPRU Missense_Mutation p.P67L 0.11 tolerated(0.06) benign(0.008) TCGA-D3-A51G-06 1 29631876 29631876 G A PTPRU Missense_Mutation p.R929Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 1 31214502 31214502 C T LAPTM5 Silent p.L81L 0.93 TCGA-D3-A51G-06 1 31441268 31441268 G A PUM1 Silent p.P526P 0.71 TCGA-D3-A51G-06 1 33276317 33276317 G A YARS Silent p.A85A 0.09 TCGA-D3-A51G-06 1 34554618 34554618 C T CSMD2 Missense_Mutation p.V82M 0.57 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A51G-06 1 34667734 34667734 G A C1orf94 Silent p.G440G 0.20 TCGA-D3-A51G-06 1 35320860 35320860 G A SMIM12 3'UTR 0.10 TCGA-D3-A51G-06 1 35873739 35873739 C T ZMYM4 Silent p.Y1309Y 0.32 TCGA-D3-A51G-06 1 36859427 36859427 G A LSM10 Missense_Mutation p.H102Y 0.77 deleterious(0.04) benign(0.258) TCGA-D3-A51G-06 1 38227125 38227125 G A EPHA10 Missense_Mutation p.R268C 0.13 deleterious(0) probably_damaging(0.994) TCGA-D3-A51G-06 1 39768639 39768639 C T MACF1 Missense_Mutation p.S898F 0.21 probably_damaging(0.977) TCGA-D3-A51G-06 1 41285929 41285929 C T KCNQ4 Silent p.I346I 0.84 TCGA-D3-A51G-06 1 42045469 42045469 G A HIVEP3 Missense_Mutation p.A1667V 0.67 possibly_damaging(0.627) TCGA-D3-A51G-06 1 43130609 43130609 C T PPIH Missense_Mutation p.P107S 0.65 deleterious(0.02) benign(0.09) TCGA-D3-A51G-06 1 43240423 43240423 C T C1orf50 Missense_Mutation p.H100Y 0.12 deleterious(0) benign(0.26) TCGA-D3-A51G-06 1 43852618 43852618 G A MED8 Missense_Mutation p.H108Y 0.75 tolerated(1) benign(0.018) TCGA-D3-A51G-06 1 43905575 43905575 C T SZT2 Nonsense_Mutation p.R2299* 0.17 TCGA-D3-A51G-06 1 43905651 43905651 C T SZT2 Missense_Mutation p.A2324V 0.39 deleterious(0) probably_damaging(0.96) TCGA-D3-A51G-06 1 43905652 43905652 C T SZT2 Silent p.A2324A 0.38 TCGA-D3-A51G-06 1 44438349 44438349 G A DPH2 3'UTR 0.86 TCGA-D3-A51G-06 1 45793816 45793816 T C HPDL Silent p.T332T 0.12 TCGA-D3-A51G-06 1 46494567 46494567 G T MAST2 Missense_Mutation p.G727V 0.72 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A51G-06 1 46685847 46685847 C T LURAP1 Silent p.A225A 0.11 TCGA-D3-A51G-06 1 46763234 46763234 C T LRRC41 Splice_Site p.X119_splice 0.17 TCGA-D3-A51G-06 1 46977893 46977893 C T DMBX1 Silent p.A287A 0.67 TCGA-D3-A51G-06 1 47284396 47284396 G A CYP4B1 Silent p.R483R 0.47 TCGA-D3-A51G-06 1 47515953 47515953 T C CYP4X1 3'UTR 0.18 TCGA-D3-A51G-06 1 47685498 47685498 C T TAL1 Missense_Mutation p.G297E 0.74 deleterious(0) benign(0.217) TCGA-D3-A51G-06 1 57372418 57372418 G A C8A Missense_Mutation p.G392E 0.12 tolerated(0.11) probably_damaging(0.925) TCGA-D3-A51G-06 1 59147776 59147776 G A MYSM1 Nonsense_Mutation p.Q314* 0.75 TCGA-D3-A51G-06 1 6189052 6189052 C T CHD5 Silent p.E1155E 0.65 TCGA-D3-A51G-06 1 6387469 6387469 G A ACOT7 Missense_Mutation p.S182F 0.60 tolerated(0.1) benign(0.009) TCGA-D3-A51G-06 1 66085674 66085674 G A LEPR Missense_Mutation p.G820E 0.81 deleterious(0) probably_damaging(0.972) TCGA-D3-A51G-06 1 66088592 66088592 G A LEPR Missense_Mutation p.M867I 0.14 deleterious(0) probably_damaging(0.99) TCGA-D3-A51G-06 1 6631138 6631138 C T TAS1R1 Silent p.L121L 0.38 TCGA-D3-A51G-06 1 6635392 6635392 C T TAS1R1 Silent p.L400L 0.43 TCGA-D3-A51G-06 1 67301343 67301343 G A WDR78 Missense_Mutation p.R567W 0.15 deleterious(0) possibly_damaging(0.582) TCGA-D3-A51G-06 1 68512858 68512858 C T DIRAS3 Silent p.V41V 0.71 TCGA-D3-A51G-06 1 75005965 75005965 G A TNNI3K Missense_Mutation p.R901K 0.74 tolerated_low_confidence(0.48) benign(0.001) TCGA-D3-A51G-06 1 75039077 75039077 C T C1orf173 Missense_Mutation p.E773K 0.73 tolerated(0.06) benign(0.021) TCGA-D3-A51G-06 1 76190361 76190361 C T ACADM 5'Flank 0.60 TCGA-D3-A51G-06 1 77759609 77759609 C T AK5 Missense_Mutation p.P127S 0.76 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A51G-06 1 7812586 7812586 C T CAMTA1 Missense_Mutation p.R1651C 0.12 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 1 79120881 79120881 G A IFI44 Missense_Mutation p.G226E 0.15 deleterious(0.01) possibly_damaging(0.863) TCGA-D3-A51G-06 1 9031030 9031030 C T CA6 Silent p.F278F 0.16 TCGA-D3-A51G-06 1 91977196 91977196 G A CDC7 Silent p.K126K 0.71 TCGA-D3-A51G-06 1 92712635 92712635 G A GLMN Missense_Mutation p.P551L 0.73 deleterious(0) probably_damaging(0.91) TCGA-D3-A51G-06 1 98187146 98187146 G A DPYD Missense_Mutation p.L135F 0.77 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 1 984698 984698 C T AGRN Missense_Mutation p.R1461W 0.25 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 1 99470241 99470241 G A LPPR5 5'UTR 0.19 TCGA-D3-A51G-06 1 99771753 99771753 C T LPPR4 Silent p.D493D 0.74 TCGA-D3-A51G-06 20 13074168 13074168 C T SPTLC3 Missense_Mutation p.S257L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 20 13098368 13098368 G A SPTLC3 Missense_Mutation p.R383K 0.31 tolerated(1) benign(0.006) TCGA-D3-A51G-06 20 14307759 14307759 C T FLRT3 Missense_Mutation p.E132K 0.64 tolerated(0.64) benign(0.04) TCGA-D3-A51G-06 20 1559294 1559294 G A RP4-576H24.4 Silent p.S40S 0.54 TCGA-D3-A51G-06 20 1961130 1961130 C T PDYN Missense_Mutation p.D202N 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A51G-06 20 19698203 19698203 C T SLC24A3 Missense_Mutation p.S584F 0.61 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 20 20177255 20177255 C T C20orf26 Silent p.F544F 0.28 TCGA-D3-A51G-06 20 20257933 20257933 G C C20orf26 Missense_Mutation p.C876S 0.58 tolerated(0.17) benign(0.077) TCGA-D3-A51G-06 20 24988285 24988285 G A ACSS1 3'UTR 0.45 TCGA-D3-A51G-06 20 25000665 25000665 G A ACSS1 Silent p.S409S 0.23 TCGA-D3-A51G-06 20 2539344 2539344 G A TMC2 Missense_Mutation p.E109K 0.30 tolerated_low_confidence(0.37) benign(0.002) TCGA-D3-A51G-06 20 2560642 2560642 G A TMC2 Nonsense_Mutation p.W258* 0.63 TCGA-D3-A51G-06 20 30584504 30584504 T C XKR7 Silent p.F328F 0.30 TCGA-D3-A51G-06 20 31624268 31624268 C T BPIFB6 Nonsense_Mutation p.Q199* 0.52 TCGA-D3-A51G-06 20 3202489 3202489 C T ITPA Silent p.G138G 0.45 TCGA-D3-A51G-06 20 3202490 3202490 C T ITPA Missense_Mutation p.R139W 0.45 deleterious(0) probably_damaging(0.912) TCGA-D3-A51G-06 20 33137834 33137834 G A MAP1LC3A Splice_Site p.X18_splice 0.21 TCGA-D3-A51G-06 20 33999785 33999785 C T UQCC1 5'UTR 0.24 TCGA-D3-A51G-06 20 34763556 34763556 C T EPB41L1 Silent p.P87P 0.10 TCGA-D3-A51G-06 20 35776282 35776282 G A MROH8 Silent p.L396L 0.69 TCGA-D3-A51G-06 20 3649647 3649647 G T ADAM33 Missense_Mutation p.A802E 0.10 tolerated(0.26) benign(0.007) TCGA-D3-A51G-06 20 36869200 36869200 C T KIAA1755 Missense_Mutation p.E445K 0.29 tolerated(0.14) benign(0.001) TCGA-D3-A51G-06 20 37536552 37536552 G A PPP1R16B Silent p.R334R 0.30 TCGA-D3-A51G-06 20 39833197 39833197 G A ZHX3 Silent p.T120T 0.31 TCGA-D3-A51G-06 20 39980458 39980458 C T LPIN3 Intron 0.42 TCGA-D3-A51G-06 20 39983347 39983347 C T LPIN3 Silent p.S530S 0.67 TCGA-D3-A51G-06 20 42694688 42694688 C A TOX2 Missense_Mutation p.P433T 0.17 tolerated(0.18) probably_damaging(0.997) TCGA-D3-A51G-06 20 43386718 43386718 G A RIMS4 Missense_Mutation p.P116L 0.30 deleterious_low_confidence(0.02) benign(0.014) TCGA-D3-A51G-06 20 43804674 43804674 C T PI3 Silent p.A84A 0.31 TCGA-D3-A51G-06 20 44519263 44519263 G A NEURL2 Missense_Mutation p.P123L 0.20 tolerated(0.66) benign(0.008) TCGA-D3-A51G-06 20 44519264 44519264 G A NEURL2 Missense_Mutation p.P123S 0.18 tolerated(0.42) benign(0.004) TCGA-D3-A51G-06 20 44590753 44590753 G A ZNF335 Silent p.Y534Y 0.54 TCGA-D3-A51G-06 20 44869733 44869733 C T CDH22 Missense_Mutation p.R140Q 0.68 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 20 45850067 45850067 G A ZMYND8 Silent p.S1059S 0.38 TCGA-D3-A51G-06 20 48130862 48130862 A T PTGIS Missense_Mutation p.V309D 0.30 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 20 49434750 49434750 G A BCAS4 Silent p.A61A 0.53 TCGA-D3-A51G-06 20 50701678 50701678 G A ZFP64 Silent p.T452T 0.58 TCGA-D3-A51G-06 20 52612594 52612594 G A BCAS1 Intron 0.27 TCGA-D3-A51G-06 20 54824478 54824478 C T MC3R Silent p.I193I 0.63 TCGA-D3-A51G-06 20 55028128 55028128 G A CASS4 Silent p.R632R 0.50 TCGA-D3-A51G-06 20 56228099 56228099 C T PMEPA1 Missense_Mutation p.G103E 0.27 deleterious(0.02) probably_damaging(0.978) TCGA-D3-A51G-06 20 56228100 56228100 C T PMEPA1 Missense_Mutation p.G103R 0.25 tolerated(0.07) probably_damaging(0.989) TCGA-D3-A51G-06 20 57767840 57767840 G A ZNF831 Missense_Mutation p.R589K 0.13 tolerated(0.44) benign(0.012) TCGA-D3-A51G-06 20 57896098 57896098 A G EDN3 Missense_Mutation p.N131S 0.27 tolerated(0.28) benign(0.175) TCGA-D3-A51G-06 20 60861677 60861677 C T OSBPL2 Silent p.D345D 0.31 TCGA-D3-A51G-06 20 62551402 62551402 C T DNAJC5 Intron 0.19 TCGA-D3-A51G-06 20 6750866 6750866 G A BMP2 Silent p.R31R 0.31 TCGA-D3-A51G-06 20 6759178 6759178 C T BMP2 Silent p.P211P 0.67 TCGA-D3-A51G-06 21 10862651 10862651 G A IGHV1OR21-1 Silent p.L10L 0.09 TCGA-D3-A51G-06 21 11039421 11039421 C T BAGE2 RNA 0.12 TCGA-D3-A51G-06 21 11058218 11058218 C T BAGE2 RNA 0.17 TCGA-D3-A51G-06 21 11058309 11058309 A T BAGE2 RNA 0.04 TCGA-D3-A51G-06 21 11098748 11098748 C T BAGE2 RNA 0.05 TCGA-D3-A51G-06 21 32492714 32492714 G A TIAM1 Missense_Mutation p.P1583L 0.27 deleterious_low_confidence(0.02) benign(0.133) TCGA-D3-A51G-06 21 33956515 33956515 C T TCP10L Missense_Mutation p.A34T 0.34 tolerated(0.27) probably_damaging(0.983) TCGA-D3-A51G-06 21 34924275 34924275 C T SON Missense_Mutation p.P913L 0.40 possibly_damaging(0.713) TCGA-D3-A51G-06 21 39817371 39817371 G A ERG Silent p.V71V 0.52 TCGA-D3-A51G-06 21 41446972 41446972 C T DSCAM Missense_Mutation p.R1627K 0.21 tolerated(0.07) possibly_damaging(0.867) TCGA-D3-A51G-06 21 43809080 43809080 C T TMPRSS3 Missense_Mutation p.G94R 0.36 deleterious(0) probably_damaging(0.991) TCGA-D3-A51G-06 21 45503144 45503144 C T TRAPPC10 Silent p.T733T 0.39 TCGA-D3-A51G-06 21 45706962 45706962 G A AIRE Missense_Mutation p.E137K 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A51G-06 21 45994516 45994516 C T KRTAP10-4 Missense_Mutation p.S294F 0.29 deleterious(0) unknown(0) TCGA-D3-A51G-06 21 46020623 46020623 G A KRTAP10-7 Silent p.V34V 0.15 TCGA-D3-A51G-06 21 46226920 46226920 G A SUMO3 Silent p.F86F 0.49 TCGA-D3-A51G-06 21 46685392 46685392 C T POFUT2 3'UTR 0.42 TCGA-D3-A51G-06 21 47423835 47423835 G T COL6A1 Missense_Mutation p.G999C 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-D3-A51G-06 21 47571477 47571477 C T FTCD Missense_Mutation p.D211N 0.35 tolerated(0.25) benign(0.003) TCGA-D3-A51G-06 22 16256542 16256542 C T POTEH 3'UTR 0.10 TCGA-D3-A51G-06 22 17072808 17072808 C T CCT8L2 Silent p.G211G 0.37 TCGA-D3-A51G-06 22 17073359 17073359 C T CCT8L2 Missense_Mutation p.E28K 0.39 tolerated(0.35) benign(0.038) TCGA-D3-A51G-06 22 18384657 18384657 C T MICAL3 Silent p.R226R 0.53 TCGA-D3-A51G-06 22 18384658 18384658 C T MICAL3 Missense_Mutation p.R226K 0.51 probably_damaging(0.989) TCGA-D3-A51G-06 22 19125788 19125788 G A DGCR14 Missense_Mutation p.P289S 0.37 deleterious(0.02) probably_damaging(1) TCGA-D3-A51G-06 22 21328366 21328366 G A AIFM3 Missense_Mutation p.G124S 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A51G-06 22 22040809 22040809 C T PPIL2 Missense_Mutation p.T251I 0.48 deleterious(0) probably_damaging(0.925) TCGA-D3-A51G-06 22 22040810 22040810 C T PPIL2 Silent p.T251T 0.48 TCGA-D3-A51G-06 22 22712439 22712439 G A IGLV1-47 Missense_Mutation p.G61E 0.40 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-D3-A51G-06 22 22724185 22724187 CTC TT IGLV7-46 Frame_Shift_Del p.S28Yfs*2 0.27 TCGA-D3-A51G-06 22 23656240 23656240 C T BCR Silent p.F1181F 0.52 TCGA-D3-A51G-06 22 25294056 25294056 C T SGSM1 Missense_Mutation p.H769Y 0.55 tolerated(0.98) benign(0.108) TCGA-D3-A51G-06 22 26777997 26777997 G A SEZ6L 3'Flank 0.36 TCGA-D3-A51G-06 22 26839208 26839208 G A ASPHD2 3'UTR 0.43 TCGA-D3-A51G-06 22 26881996 26881996 C T SRRD Silent p.L73L 0.42 TCGA-D3-A51G-06 22 29130442 29130442 G A CHEK2 Missense_Mutation p.P90S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A51G-06 22 29656197 29656197 G A RHBDD3 Missense_Mutation p.P338L 0.38 deleterious(0) probably_damaging(0.92) TCGA-D3-A51G-06 22 30367008 30367008 G A MTMR3 5'UTR 0.48 TCGA-D3-A51G-06 22 30494841 30494841 G A HORMAD2 Missense_Mutation p.E18K 0.23 tolerated(0.32) benign(0.01) TCGA-D3-A51G-06 22 32215149 32215149 C T DEPDC5 Missense_Mutation p.P603L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 22 32234801 32234801 C T DEPDC5 Missense_Mutation p.P820S 0.35 tolerated(0.2) benign(0.341) TCGA-D3-A51G-06 22 32302578 32302578 C T DEPDC5 3'UTR 0.42 TCGA-D3-A51G-06 22 32630983 32630983 A G SLC5A4 Silent p.S254S 0.35 TCGA-D3-A51G-06 22 36684955 36684955 G A MYH9 Silent p.L1530L 0.34 TCGA-D3-A51G-06 22 36684956 36684956 G A MYH9 Silent p.A1529A 0.34 TCGA-D3-A51G-06 22 36689450 36689450 G A MYH9 Silent p.S1340S 0.33 TCGA-D3-A51G-06 22 37334021 37334021 G A CSF2RB Missense_Mutation p.G724E 0.48 tolerated(0.37) benign(0.078) TCGA-D3-A51G-06 22 37528437 37528437 C T IL2RB Missense_Mutation p.G297E 0.66 deleterious(0) probably_damaging(0.95) TCGA-D3-A51G-06 22 38318090 38318090 G A MICALL1 Silent p.S227S 0.32 TCGA-D3-A51G-06 22 38318091 38318091 G A MICALL1 Missense_Mutation p.G228R 0.29 deleterious(0.03) possibly_damaging(0.779) TCGA-D3-A51G-06 22 40066044 40066044 C T CACNA1I Missense_Mutation p.P1399L 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A51G-06 22 41257102 41257102 C T DNAJB7 Silent p.E299E 0.23 TCGA-D3-A51G-06 22 41751801 41751801 G A ZC3H7B Missense_Mutation p.A737T 0.32 deleterious(0.03) benign(0.211) TCGA-D3-A51G-06 22 42274097 42274097 C T SREBF2 Silent p.H577H 0.40 TCGA-D3-A51G-06 22 42997984 42997984 C T POLDIP3 Missense_Mutation p.A177T 0.44 tolerated(0.43) benign(0.001) TCGA-D3-A51G-06 22 42998027 42998027 G A POLDIP3 Silent p.P162P 0.33 TCGA-D3-A51G-06 22 43985983 43985983 G A EFCAB6 Silent p.T1001T 0.39 TCGA-D3-A51G-06 22 43985984 43985984 G A EFCAB6 Missense_Mutation p.T1001I 0.39 deleterious(0.02) benign(0.104) TCGA-D3-A51G-06 22 44514978 44514978 G A PARVB Missense_Mutation p.E145K 0.41 deleterious(0.03) benign(0.124) TCGA-D3-A51G-06 22 45960844 45960844 G A FBLN1 Intron 0.59 TCGA-D3-A51G-06 22 50483775 50483775 C T TTLL8 Silent p.V220V 0.16 TCGA-D3-A51G-06 22 50547128 50547128 G A MOV10L1 Missense_Mutation p.E200K 0.28 deleterious(0) benign(0.027) TCGA-D3-A51G-06 2 100171164 100171164 G A AFF3 Missense_Mutation p.P1131S 0.77 deleterious(0.03) benign(0.164) TCGA-D3-A51G-06 2 101182969 101182969 C T PDCL3 Missense_Mutation p.P4L 0.18 deleterious(0.01) probably_damaging(0.946) TCGA-D3-A51G-06 2 10192463 10192463 C T KLF11 Silent p.C456C 0.26 TCGA-D3-A51G-06 2 103120150 103120150 C T SLC9A4 Missense_Mutation p.L322F 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-D3-A51G-06 2 105924669 105924669 C T TGFBRAP1 Silent p.V30V 0.63 TCGA-D3-A51G-06 2 106690398 106690398 C T C2orf40 Missense_Mutation p.L62F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 2 1079206 1079206 G A SNTG2 Silent p.T25T 0.62 TCGA-D3-A51G-06 2 108479241 108479241 G A RGPD4 Missense_Mutation p.R770Q 0.46 tolerated(0.47) possibly_damaging(0.602) TCGA-D3-A51G-06 2 112945098 112945098 A T FBLN7 3'UTR 0.14 TCGA-D3-A51G-06 2 113832943 113832943 G A IL1F10 3'UTR 0.33 TCGA-D3-A51G-06 2 113832945 113832945 G A IL1F10 3'UTR 0.34 TCGA-D3-A51G-06 2 114398994 114398994 C T RABL2A Silent p.F157F 0.32 TCGA-D3-A51G-06 2 1168852 1168852 G A SNTG2 Missense_Mutation p.G192R 0.66 tolerated(0.11) possibly_damaging(0.548) TCGA-D3-A51G-06 2 11943102 11943102 C T LPIN1 Silent p.L701L 0.16 TCGA-D3-A51G-06 2 11943103 11943103 C T LPIN1 Missense_Mutation p.P702S 0.16 tolerated(0.38) benign(0.008) TCGA-D3-A51G-06 2 119735424 119735424 G A MARCO Missense_Mutation p.E227K 0.12 tolerated(0.06) probably_damaging(0.973) TCGA-D3-A51G-06 2 119750792 119750792 G A MARCO Missense_Mutation p.D449N 0.17 deleterious(0) unknown(0) TCGA-D3-A51G-06 2 120373196 120373196 G A PCDP1 Missense_Mutation p.E441K 0.62 tolerated(0.17) benign(0.012) TCGA-D3-A51G-06 2 121736128 121736128 G A GLI2 Missense_Mutation p.R496Q 0.25 deleterious(0) probably_damaging(0.991) TCGA-D3-A51G-06 2 128186467 128186467 G A PROC Nonsense_Mutation p.W444* 0.16 TCGA-D3-A51G-06 2 128367568 128367568 C T MYO7B Missense_Mutation p.P1057S 0.62 tolerated(0.26) benign(0.004) TCGA-D3-A51G-06 2 128867287 128867287 C T UGGT1 Missense_Mutation p.T163I 0.68 deleterious(0.01) benign(0.005) TCGA-D3-A51G-06 2 128934408 128934408 C T UGGT1 Missense_Mutation p.P1187L 0.73 tolerated(0.23) benign(0.146) TCGA-D3-A51G-06 2 130897599 130897599 G A CCDC74B Missense_Mutation p.P316L 0.74 deleterious(0.04) possibly_damaging(0.873) TCGA-D3-A51G-06 2 130910667 130910667 G A SMPD4 Silent p.I740I 0.19 TCGA-D3-A51G-06 2 131103602 131103602 C T IMP4 Silent p.I202I 0.38 TCGA-D3-A51G-06 2 131520818 131520818 C T AMER3 Silent p.F391F 0.76 TCGA-D3-A51G-06 2 132010614 132010614 A T POTEE Nonsense_Mutation p.K574* 0.12 TCGA-D3-A51G-06 2 133175423 133175423 G A GPR39 Missense_Mutation p.E270K 0.16 tolerated(0.16) probably_damaging(0.995) TCGA-D3-A51G-06 2 135596255 135596255 G A ACMSD Translation_Start_Site p.M1? 0.70 deleterious(0.04) benign(0.049) TCGA-D3-A51G-06 2 135911265 135911265 C T RAB3GAP1 Missense_Mutation p.S703L 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 2 136562596 136562596 C T LCT Missense_Mutation p.G1402E 0.58 deleterious(0) probably_damaging(0.992) TCGA-D3-A51G-06 2 136562597 136562597 C T LCT Missense_Mutation p.G1402R 0.57 deleterious(0) probably_damaging(0.994) TCGA-D3-A51G-06 2 136566232 136566232 C T LCT Missense_Mutation p.D1229N 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 2 136700969 136700969 G A DARS Silent p.D134D 0.71 TCGA-D3-A51G-06 2 138759672 138759672 T C HNMT Missense_Mutation p.F113L 0.14 deleterious(0.03) possibly_damaging(0.593) TCGA-D3-A51G-06 2 141243007 141243007 G A LRP1B Silent p.I3110I 0.17 TCGA-D3-A51G-06 2 143959720 143959720 G A ARHGAP15 Silent p.R61R 0.16 TCGA-D3-A51G-06 2 1481118 1481118 C T TPO Silent p.G360G 0.50 TCGA-D3-A51G-06 2 152382699 152382699 C T NEB Silent p.A7341A 0.22 TCGA-D3-A51G-06 2 152510568 152510568 C T NEB Missense_Mutation p.D2285N 0.15 benign(0.273) TCGA-D3-A51G-06 2 152514605 152514605 C T NEB Splice_Site p.X2026_splice 0.36 TCGA-D3-A51G-06 2 154334949 154334949 C T RPRM Missense_Mutation p.G44E 0.22 tolerated(0.08) benign(0.003) TCGA-D3-A51G-06 2 158275099 158275099 T A CYTIP Missense_Mutation p.Q183H 0.23 deleterious(0.05) possibly_damaging(0.736) TCGA-D3-A51G-06 2 160007008 160007008 C T TANC1 Missense_Mutation p.P208L 0.10 deleterious(0.02) probably_damaging(0.926) TCGA-D3-A51G-06 2 163000606 163000606 T C GCG Missense_Mutation p.N156S 0.17 tolerated(0.11) benign(0.189) TCGA-D3-A51G-06 2 166179728 166179728 C T SCN2A Silent p.F578F 0.14 TCGA-D3-A51G-06 2 166210771 166210771 G A SCN2A Missense_Mutation p.D997N 0.17 deleterious(0.04) probably_damaging(0.987) TCGA-D3-A51G-06 2 166847987 166847987 C T SCN1A Missense_Mutation p.R1933Q 0.40 tolerated(0.3) benign(0) TCGA-D3-A51G-06 2 166911171 166911171 G A SCN1A Silent p.L193L 0.60 TCGA-D3-A51G-06 2 172944869 172944869 G A METAP1D Silent p.T288T 0.69 TCGA-D3-A51G-06 2 173662258 173662258 C T RAPGEF4 Missense_Mutation p.R72C 0.57 deleterious(0) probably_damaging(0.961) TCGA-D3-A51G-06 2 17698588 17698588 C T RAD51AP2 Silent p.K365K 0.14 TCGA-D3-A51G-06 2 178704995 178704995 G A PDE11A Missense_Mutation p.P495S 0.27 tolerated(0.13) probably_damaging(0.996) TCGA-D3-A51G-06 2 179391822 179391822 C T TTN Missense_Mutation p.D35965N 0.51 TCGA-D3-A51G-06 2 179411112 179411112 C T TTN Nonsense_Mutation p.W31649* 0.12 TCGA-D3-A51G-06 2 179419360 179419360 C T TTN Missense_Mutation p.E29572K 0.14 TCGA-D3-A51G-06 2 179430689 179430689 C T TTN Missense_Mutation p.E26724K 0.78 TCGA-D3-A51G-06 2 179443758 179443758 G A TTN Missense_Mutation p.P22667S 0.58 TCGA-D3-A51G-06 2 179582510 179582510 C T TTN Missense_Mutation p.R8364K 0.21 TCGA-D3-A51G-06 2 179585273 179585273 C T TTN Missense_Mutation p.R7739Q 0.26 TCGA-D3-A51G-06 2 179606123 179606123 G A TTN Missense_Mutation p.P3946L 0.68 TCGA-D3-A51G-06 2 179612348 179612348 C T TTN Intron 0.61 TCGA-D3-A51G-06 2 179612364 179612364 T C TTN Intron 0.10 TCGA-D3-A51G-06 2 179616229 179616229 A G TTN Intron 0.64 TCGA-D3-A51G-06 2 179616450 179616450 G A TTN Intron 0.23 TCGA-D3-A51G-06 2 179621427 179621427 T G TTN Missense_Mutation p.K3592N 0.12 TCGA-D3-A51G-06 2 179641543 179641543 C T TTN Missense_Mutation p.R1683Q 0.20 TCGA-D3-A51G-06 2 179659141 179659141 T C TTN Silent p.Q461Q 0.67 TCGA-D3-A51G-06 2 182521722 182521722 C T CERKL Silent p.R4R 0.45 TCGA-D3-A51G-06 2 182543374 182543374 C T NEUROD1 Missense_Mutation p.E72K 0.21 tolerated(0.1) benign(0.052) TCGA-D3-A51G-06 2 182543375 182543375 T C NEUROD1 Silent p.E71E 0.22 TCGA-D3-A51G-06 2 183860544 183860544 G A NCKAP1 Missense_Mutation p.S215F 0.69 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 2 196834804 196834804 C T DNAH7 Silent p.R691R 0.62 TCGA-D3-A51G-06 2 197189846 197189846 C T HECW2 Missense_Mutation p.G200E 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 2 201477399 201477399 G A AOX1 Missense_Mutation p.G444E 0.20 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 2 202002952 202002952 C T CFLAR Intron 0.19 TCGA-D3-A51G-06 2 202494041 202494041 G A TMEM237 Missense_Mutation p.L261F 0.21 tolerated(0.19) benign(0.137) TCGA-D3-A51G-06 2 20404018 20404018 G A SDC1 Silent p.T61T 0.13 TCGA-D3-A51G-06 2 204073987 204073989 TAT CA NBEAL1 Frame_Shift_Del p.I2547Tfs*30 0.39 TCGA-D3-A51G-06 2 209309521 209309521 C T PTH2R Silent p.I254I 0.65 TCGA-D3-A51G-06 2 21230954 21230954 C T APOB Nonsense_Mutation p.W2929* 0.72 TCGA-D3-A51G-06 2 215855595 215855595 G A ABCA12 Missense_Mutation p.S1152L 0.10 tolerated(1) benign(0.003) TCGA-D3-A51G-06 2 216248207 216248207 C A FN1 Splice_Site p.X1632_splice 0.56 TCGA-D3-A51G-06 2 217543705 217543705 G A IGFBP5 Silent p.S145S 0.67 TCGA-D3-A51G-06 2 218674599 218674599 G A TNS1 Silent p.I1636I 0.17 TCGA-D3-A51G-06 2 219000148 219000148 G A CXCR2 Silent p.R208R 0.15 TCGA-D3-A51G-06 2 219103464 219103464 T C ARPC2 Silent p.L116L 0.71 TCGA-D3-A51G-06 2 219295453 219295453 C T VIL1 Silent p.F318F 0.71 TCGA-D3-A51G-06 2 219447751 219447751 A T RQCD1 Missense_Mutation p.N88Y 0.66 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 2 219525985 219525985 C T BCS1L Missense_Mutation p.S92F 0.21 deleterious(0.03) possibly_damaging(0.615) TCGA-D3-A51G-06 2 219679735 219679735 C T CYP27A1 Silent p.F526F 0.34 TCGA-D3-A51G-06 2 220353374 220353374 C T SPEG Silent p.T2671T 0.24 TCGA-D3-A51G-06 2 220505162 220505162 C T SLC4A3 Silent p.I1123I 0.19 TCGA-D3-A51G-06 2 224463674 224463674 G A SCG2 Silent p.D109D 0.15 TCGA-D3-A51G-06 2 225729787 225729787 C A DOCK10 Silent p.V425V 0.20 TCGA-D3-A51G-06 2 231102934 231102934 C T SP140 Nonsense_Mutation p.Q82* 0.10 TCGA-D3-A51G-06 2 234112876 234112876 C T INPP5D Missense_Mutation p.S1015F 0.48 deleterious(0) possibly_damaging(0.622) TCGA-D3-A51G-06 2 234238222 234238222 C T SAG Silent p.F244F 0.70 TCGA-D3-A51G-06 2 234343527 234343527 C T DGKD Missense_Mutation p.S189L 0.72 deleterious(0.04) probably_damaging(0.966) TCGA-D3-A51G-06 2 234581115 234581115 G A UGT1A9 Missense_Mutation p.E179K 0.67 tolerated(1) benign(0.232) TCGA-D3-A51G-06 2 236877164 236877164 C T AGAP1 Silent p.P514P 0.62 TCGA-D3-A51G-06 2 240016649 240016649 G A HDAC4 Intron 0.74 TCGA-D3-A51G-06 2 241697798 241697798 G A KIF1A Missense_Mutation p.P854L 0.77 deleterious(0.02) probably_damaging(1) TCGA-D3-A51G-06 2 241715317 241715317 G A KIF1A Silent p.F303F 0.12 TCGA-D3-A51G-06 2 241831026 241831026 G A C2orf54 Silent p.F223F 0.21 TCGA-D3-A51G-06 2 26152311 26152311 G A KIF3C Silent p.S717S 0.14 TCGA-D3-A51G-06 2 27800177 27800177 G A C2orf16 Silent p.K246K 0.63 TCGA-D3-A51G-06 2 28766121 28766121 C T PLB1 Missense_Mutation p.L308F 0.79 deleterious(0) possibly_damaging(0.635) TCGA-D3-A51G-06 2 29274876 29274876 G A FAM179A Missense_Mutation p.G993R 0.46 tolerated_low_confidence(0.1) benign(0.016) TCGA-D3-A51G-06 2 29296798 29296798 C T C2orf71 Missense_Mutation p.M110I 0.74 tolerated(0.58) benign(0.002) TCGA-D3-A51G-06 2 32481872 32481872 C T NLRC4 5'UTR 0.28 TCGA-D3-A51G-06 2 32774474 32774474 C T BIRC6 Missense_Mutation p.P4357L 0.40 probably_damaging(0.999) TCGA-D3-A51G-06 2 3392198 3392198 C T TRAPPC12 Silent p.P268P 0.21 TCGA-D3-A51G-06 2 39944345 39944345 G A TMEM178A Missense_Mutation p.R283Q 0.63 deleterious(0.02) benign(0.022) TCGA-D3-A51G-06 2 48573792 48573792 C T FOXN2 Missense_Mutation p.P147S 0.71 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 2 50758484 50758484 G A NRXN1 Missense_Mutation p.S783F 0.75 deleterious(0.01) possibly_damaging(0.902) TCGA-D3-A51G-06 2 54147374 54147374 G A PSME4 Silent p.L792L 0.15 TCGA-D3-A51G-06 2 55481241 55481241 A G MTIF2 Silent p.F200F 0.16 TCGA-D3-A51G-06 2 56611435 56611435 C T CCDC85A Missense_Mutation p.S536L 0.70 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-D3-A51G-06 2 61145543 61145543 C T REL Missense_Mutation p.R219C 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A51G-06 2 63833147 63833147 C T MDH1 Silent p.F306F 0.65 TCGA-D3-A51G-06 2 70890438 70890438 C T ADD2 3'UTR 0.33 TCGA-D3-A51G-06 2 70903897 70903897 C T ADD2 Intron 0.74 TCGA-D3-A51G-06 2 73829471 73829471 C T ALMS1 Missense_Mutation p.R4091C 0.64 benign(0.003) TCGA-D3-A51G-06 2 74002123 74002123 G A DUSP11 Missense_Mutation p.L123F 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 2 74441398 74441398 A T MTHFD2 3'UTR 0.20 TCGA-D3-A51G-06 2 74466470 74466470 G A SLC4A5 Missense_Mutation p.P771S 0.11 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A51G-06 2 74699807 74699807 G A MRPL53 5'UTR 0.70 TCGA-D3-A51G-06 2 75100492 75100492 G A HK2 Silent p.R195R 0.11 TCGA-D3-A51G-06 2 79971513 79971513 G T CTNNA2 Missense_Mutation p.V35L 0.57 tolerated(0.05) benign(0.159) TCGA-D3-A51G-06 2 85510672 85510672 G A TCF7L1 Missense_Mutation p.D166N 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A51G-06 2 95947735 95947735 G A PROM2 Silent p.R538R 0.15 TCGA-D3-A51G-06 2 96789684 96789684 C T ASTL Missense_Mutation p.E401K 0.18 deleterious_low_confidence(0.01) benign(0.051) TCGA-D3-A51G-06 2 97403781 97403781 G A LMAN2L Silent p.L71L 0.81 TCGA-D3-A51G-06 2 99463230 99463230 G A KIAA1211L Missense_Mutation p.R12W 0.72 deleterious(0) possibly_damaging(0.835) TCGA-D3-A51G-06 3 100645170 100645170 C T ABI3BP Missense_Mutation p.G86R 0.29 deleterious(0) probably_damaging(0.953) TCGA-D3-A51G-06 3 101476691 101476691 C T CEP97 Missense_Mutation p.P414L 0.49 deleterious(0.02) probably_damaging(0.959) TCGA-D3-A51G-06 3 108391404 108391404 C T DZIP3 Intron 0.20 TCGA-D3-A51G-06 3 109028135 109028135 T G DPPA2 Missense_Mutation p.K75T 0.34 tolerated(0.1) benign(0.305) TCGA-D3-A51G-06 3 109046647 109046647 C A DPPA4 3'UTR 0.57 TCGA-D3-A51G-06 3 111296379 111296379 C T CD96 Missense_Mutation p.L192F 0.46 tolerated(0.75) benign(0.026) TCGA-D3-A51G-06 3 114069131 114069131 G A ZBTB20 Silent p.F598F 0.52 TCGA-D3-A51G-06 3 115395199 115395199 G A GAP43 Missense_Mutation p.A160T 0.60 tolerated(0.12) probably_damaging(0.994) TCGA-D3-A51G-06 3 119452210 119452210 G A MAATS1 Splice_Site p.X401_splice 0.24 TCGA-D3-A51G-06 3 119886852 119886852 G A GPR156 Missense_Mutation p.P491L 0.27 tolerated(0.08) benign(0.02) TCGA-D3-A51G-06 3 121980750 121980750 G A CASR Missense_Mutation p.G290S 0.22 deleterious(0.02) possibly_damaging(0.908) TCGA-D3-A51G-06 3 123427578 123427578 C T MYLK Missense_Mutation p.E703K 0.49 tolerated(0.07) possibly_damaging(0.621) TCGA-D3-A51G-06 3 124165059 124165059 C T KALRN Missense_Mutation p.T1120I 0.24 deleterious(0) possibly_damaging(0.865) TCGA-D3-A51G-06 3 124746123 124746123 G A HEG1 Missense_Mutation p.S280F 0.78 tolerated(0.07) benign(0.023) TCGA-D3-A51G-06 3 126137305 126137305 G A CCDC37 Silent p.K141K 0.56 TCGA-D3-A51G-06 3 128200015 128200015 T G GATA2 Silent p.A430A 0.57 TCGA-D3-A51G-06 3 128690107 128690107 G A KIAA1257 Silent p.S397S 0.20 TCGA-D3-A51G-06 3 128848831 128848831 G A ISY1 3'UTR 0.67 TCGA-D3-A51G-06 3 129152780 129152780 G A MBD4 Missense_Mutation p.R442W 0.47 deleterious(0.03) benign(0.2) TCGA-D3-A51G-06 3 129251202 129251202 C T RHO Silent p.T213T 0.31 TCGA-D3-A51G-06 3 129389629 129389629 G A TMCC1 Missense_Mutation p.S352F 0.40 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 3 130353469 130353469 G A COL6A6 Silent p.K1676K 0.21 TCGA-D3-A51G-06 3 133099172 133099172 C T TMEM108 Missense_Mutation p.P206L 0.37 tolerated_low_confidence(0.09) benign(0.075) TCGA-D3-A51G-06 3 1339614 1339614 C T CNTN6 Missense_Mutation p.P234S 0.53 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A51G-06 3 136664568 136664568 G T NCK1 Nonsense_Mutation p.E124* 0.57 TCGA-D3-A51G-06 3 138255899 138255899 G A CEP70 Intron 0.23 TCGA-D3-A51G-06 3 13860602 13860602 T G WNT7A Missense_Mutation p.T297P 0.37 deleterious(0) probably_damaging(0.992) TCGA-D3-A51G-06 3 138724845 138724845 C T PRR23A Missense_Mutation p.R89Q 0.29 tolerated(1) benign(0.2) TCGA-D3-A51G-06 3 138762974 138762974 G A PRR23C Silent p.F163F 0.38 TCGA-D3-A51G-06 3 140401926 140401926 G A TRIM42 Missense_Mutation p.D322N 0.51 tolerated(0.2) benign(0.081) TCGA-D3-A51G-06 3 142607685 142607685 G A PCOLCE2 Silent p.T18T 0.54 TCGA-D3-A51G-06 3 1444001 1444001 G A CNTN6 Splice_Site p.X940_splice 0.26 TCGA-D3-A51G-06 3 14513751 14513751 A T SLC6A6 Missense_Mutation p.T379S 0.26 tolerated(0.57) benign(0.124) TCGA-D3-A51G-06 3 147130318 147130318 C T ZIC1 Silent p.F332F 0.22 TCGA-D3-A51G-06 3 14724304 14724304 C T C3orf20 Silent p.L28L 0.32 TCGA-D3-A51G-06 3 14814327 14814327 C T C3orf20 Missense_Mutation p.P887L 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.616) TCGA-D3-A51G-06 3 148597581 148597581 G A CPA3 Missense_Mutation p.E161K 0.12 tolerated(1) benign(0) TCGA-D3-A51G-06 3 149684245 149684245 T A PFN2 3'UTR 0.54 TCGA-D3-A51G-06 3 149684247 149684247 C T PFN2 3'UTR 0.55 TCGA-D3-A51G-06 3 151056103 151056103 G A P2RY12 Silent p.F177F 0.55 TCGA-D3-A51G-06 3 151094937 151094937 G A MED12L Silent p.T1394T 0.73 TCGA-D3-A51G-06 3 151095855 151095855 A G MED12L Missense_Mutation p.T1423A 0.37 tolerated(0.12) possibly_damaging(0.544) TCGA-D3-A51G-06 3 151127055 151127055 C T MED12L Missense_Mutation p.L1914F 0.54 tolerated_low_confidence(0.11) benign(0.323) TCGA-D3-A51G-06 3 153840443 153840443 C T ARHGEF26 Missense_Mutation p.P221L 0.53 deleterious(0) benign(0.193) TCGA-D3-A51G-06 3 153840463 153840463 C T ARHGEF26 Missense_Mutation p.L228F 0.46 deleterious(0.04) benign(0.11) TCGA-D3-A51G-06 3 16254193 16254193 C T GALNT15 Missense_Mutation p.R439C 0.55 deleterious(0.01) benign(0.035) TCGA-D3-A51G-06 3 164783060 164783060 G A SI Missense_Mutation p.L266F 0.28 tolerated(0.73) benign(0.004) TCGA-D3-A51G-06 3 167170763 167170763 C G SERPINI2 Missense_Mutation p.E309Q 0.38 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A51G-06 3 169656266 169656266 G A SAMD7 Missense_Mutation p.G438E 0.64 tolerated(1) benign(0.024) TCGA-D3-A51G-06 3 17052778 17052778 C T PLCL2 Missense_Mutation p.S521F 0.45 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 3 17053502 17053502 G A PLCL2 Silent p.K762K 0.40 TCGA-D3-A51G-06 3 170858197 170858197 C T TNIK Silent p.E441E 0.30 TCGA-D3-A51G-06 3 179437811 179437811 C T USP13 Missense_Mutation p.H297Y 0.91 deleterious(0.02) benign(0.005) TCGA-D3-A51G-06 3 179593220 179593220 C T PEX5L Missense_Mutation p.G184E 0.73 deleterious_low_confidence(0.03) benign(0.097) TCGA-D3-A51G-06 3 183006964 183006964 C T MCF2L2 Missense_Mutation p.E574K 0.45 tolerated(0.16) benign(0.009) TCGA-D3-A51G-06 3 183017897 183017897 G A MCF2L2 Missense_Mutation p.R401W 0.27 deleterious(0) possibly_damaging(0.696) TCGA-D3-A51G-06 3 183660662 183660662 G A ABCC5 Missense_Mutation p.P1183S 0.21 tolerated(0.46) benign(0.235) TCGA-D3-A51G-06 3 183778032 183778032 G A HTR3C Missense_Mutation p.M412I 0.56 tolerated(0.05) benign(0) TCGA-D3-A51G-06 3 185146557 185146557 C T MAP3K13 Missense_Mutation p.P63L 0.26 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-D3-A51G-06 3 186015887 186015887 C T DGKG Silent p.T92T 0.56 TCGA-D3-A51G-06 3 186943126 186943126 C T MASP1 Missense_Mutation p.G576E 0.25 tolerated(1) benign(0.014) TCGA-D3-A51G-06 3 187444628 187444628 G A BCL6 Silent p.L533L 0.25 TCGA-D3-A51G-06 3 189456537 189456537 G A TP63 Missense_Mutation p.D100N 0.20 tolerated(0.4) benign(0.108) TCGA-D3-A51G-06 3 189526276 189526276 C T TP63 Silent p.S180S 0.56 TCGA-D3-A51G-06 3 189691793 189691793 C T LEPREL1 Missense_Mutation p.G485R 0.57 tolerated(0.18) benign(0.003) TCGA-D3-A51G-06 3 192973492 192973492 G A HRASLS Missense_Mutation p.G123E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 3 195498576 195498576 G A MUC4 Missense_Mutation p.P4397S 0.17 benign(0.092) TCGA-D3-A51G-06 3 197401523 197401523 G A KIAA0226 3'Flank 0.50 TCGA-D3-A51G-06 3 20136892 20136892 C T KAT2B Silent p.L190L 0.17 TCGA-D3-A51G-06 3 22424107 22424107 G A HMGB1P5 RNA 0.55 TCGA-D3-A51G-06 3 27216271 27216271 C T NEK10 Silent p.L853L 0.54 TCGA-D3-A51G-06 3 27444630 27444630 G A SLC4A7 Missense_Mutation p.S765L 0.25 tolerated(0.32) benign(0.008) TCGA-D3-A51G-06 3 32181842 32181842 C T GPD1L Silent p.F163F 0.24 TCGA-D3-A51G-06 3 36893779 36893779 G A TRANK1 Missense_Mutation p.S1492F 0.69 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 3 38173449 38173449 G A ACAA1 Missense_Mutation p.S124L 0.24 deleterious(0.02) possibly_damaging(0.692) TCGA-D3-A51G-06 3 38783895 38783895 G A SCN10A Missense_Mutation p.P665S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 3 39373938 39373938 C T CCR8 Missense_Mutation p.A39V 0.54 tolerated(0.06) benign(0.008) TCGA-D3-A51G-06 3 42916049 42916049 G A CYP8B1 Silent p.F420F 0.31 TCGA-D3-A51G-06 3 42956430 42956430 A C ZNF662 Missense_Mutation p.T315P 0.18 deleterious(0.02) possibly_damaging(0.731) TCGA-D3-A51G-06 3 44816861 44816861 C T KIF15 Missense_Mutation p.R60W 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 3 45152210 45152210 A T CDCP1 Missense_Mutation p.L260Q 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A51G-06 3 45837945 45837945 G A SLC6A20 5'UTR 0.26 TCGA-D3-A51G-06 3 46414941 46414941 C T CCR5 Missense_Mutation p.P183L 0.56 deleterious(0.02) benign(0.068) TCGA-D3-A51G-06 3 46621264 46621264 G A TDGF1 Missense_Mutation p.G87R 0.34 tolerated(0.08) possibly_damaging(0.724) TCGA-D3-A51G-06 3 48619145 48619145 C T COL7A1 Silent p.G1572G 0.19 TCGA-D3-A51G-06 3 50252157 50252157 G A SLC38A3 RNA 0.35 TCGA-D3-A51G-06 3 50683143 50683143 C T MAPKAPK3 Missense_Mutation p.P211S 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 3 51263126 51263126 C T DOCK3 Silent p.F433F 0.26 TCGA-D3-A51G-06 3 52185054 52185054 G A POC1A Silent p.F27F 0.23 TCGA-D3-A51G-06 3 52245537 52245537 C T ALAS1 Silent p.V523V 0.30 TCGA-D3-A51G-06 3 52950199 52950199 G A SFMBT1 Silent p.L483L 0.18 TCGA-D3-A51G-06 3 54537682 54537682 G T CACNA2D3 Splice_Site p.X182_splice 0.22 TCGA-D3-A51G-06 3 57494134 57494134 C T DNAH12 Missense_Mutation p.V226I 0.21 tolerated(0.15) benign(0.005) TCGA-D3-A51G-06 3 58118608 58118608 G A FLNB Silent p.E1519E 0.50 TCGA-D3-A51G-06 3 58141765 58141765 C T FLNB Missense_Mutation p.S2315F 0.50 tolerated(0.7) benign(0.203) TCGA-D3-A51G-06 3 58519227 58519227 C T ACOX2 Silent p.Q176Q 0.51 TCGA-D3-A51G-06 3 62385022 62385022 G A CADPS 3'UTR 0.60 TCGA-D3-A51G-06 3 71733733 71733733 C T EIF4E3 3'UTR 0.45 TCGA-D3-A51G-06 3 7340418 7340418 G A GRM7 Missense_Mutation p.D262N 0.47 tolerated(0.21) benign(0.023) TCGA-D3-A51G-06 3 8809178 8809178 C T OXTR Silent p.R232R 0.43 TCGA-D3-A51G-06 3 9032503 9032503 C T SRGAP3 Missense_Mutation p.G860E 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A51G-06 3 9290642 9290642 A T SRGAP3 5'UTR 0.22 TCGA-D3-A51G-06 3 9290643 9290643 C T SRGAP3 5'UTR 0.22 TCGA-D3-A51G-06 3 97486989 97486989 T C ARL6 Missense_Mutation p.L13P 0.26 tolerated(0.1) possibly_damaging(0.855) TCGA-D3-A51G-06 3 9793534 9793534 A T OGG1 Missense_Mutation p.T156S 0.57 tolerated(0.69) benign(0.035) TCGA-D3-A51G-06 3 9793535 9793535 C T OGG1 Missense_Mutation p.T156I 0.57 deleterious(0) possibly_damaging(0.749) TCGA-D3-A51G-06 3 99513481 99513481 G A COL8A1 Missense_Mutation p.G246R 0.22 deleterious(0) unknown(0) TCGA-D3-A51G-06 4 1018763 1018763 C T FGFRL1 Silent p.I381I 0.21 TCGA-D3-A51G-06 4 104510894 104510894 G A TACR3 Missense_Mutation p.S448F 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A51G-06 4 114195792 114195792 C T ANK2 Missense_Mutation p.S557F 0.23 probably_damaging(0.995) TCGA-D3-A51G-06 4 119026174 119026174 C T NDST3 Missense_Mutation p.A328V 0.21 deleterious(0.01) benign(0.009) TCGA-D3-A51G-06 4 126411726 126411726 C T FAT4 Silent p.I4583I 0.58 TCGA-D3-A51G-06 4 138449967 138449967 G A PCDH18 Missense_Mutation p.S832F 0.21 deleterious(0) probably_damaging(0.962) TCGA-D3-A51G-06 4 141578865 141578865 G A TBC1D9 Silent p.L675L 0.54 TCGA-D3-A51G-06 4 141578867 141578867 G A TBC1D9 Missense_Mutation p.S674F 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 4 141592000 141592000 G C TBC1D9 Missense_Mutation p.F380L 0.20 tolerated(0.06) probably_damaging(0.977) TCGA-D3-A51G-06 4 144826626 144826626 G A GYPE Missense_Mutation p.S12L 0.19 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-D3-A51G-06 4 144922398 144922398 C T GYPB Missense_Mutation p.A26T 0.17 deleterious(0.04) benign(0.14) TCGA-D3-A51G-06 4 145038071 145038071 C T GYPA Missense_Mutation p.G98E 0.36 deleterious(0.03) benign(0.131) TCGA-D3-A51G-06 4 153243937 153243937 G A FBXW7 3'UTR 0.33 TCGA-D3-A51G-06 4 155237102 155237102 C T DCHS2 Missense_Mutation p.M1231I 0.56 tolerated(1) benign(0.002) TCGA-D3-A51G-06 4 164050305 164050305 G T NAF1 Missense_Mutation p.P410H 0.53 deleterious(0) possibly_damaging(0.907) TCGA-D3-A51G-06 4 164271506 164271506 C T NPY5R Silent p.F27F 0.49 TCGA-D3-A51G-06 4 164393463 164393463 C T TKTL2 Missense_Mutation p.R475Q 0.40 deleterious(0.01) probably_damaging(0.974) TCGA-D3-A51G-06 4 169300899 169300899 G A DDX60L Missense_Mutation p.S1400F 0.22 deleterious(0) probably_damaging(0.982) TCGA-D3-A51G-06 4 177146478 177146478 G A ASB5 Nonsense_Mutation p.R71* 0.48 TCGA-D3-A51G-06 4 183245273 183245273 C T TENM3 Missense_Mutation p.R34W 0.14 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-D3-A51G-06 4 183675553 183675553 C T TENM3 Missense_Mutation p.P1345S 0.44 deleterious(0.01) benign(0.029) TCGA-D3-A51G-06 4 183675573 183675573 C T TENM3 Silent p.N1351N 0.60 TCGA-D3-A51G-06 4 183676246 183676246 C T TENM3 Nonsense_Mutation p.R1576* 0.64 TCGA-D3-A51G-06 4 185018424 185018424 C T ENPP6 Missense_Mutation p.R364Q 0.58 deleterious(0.02) benign(0.155) TCGA-D3-A51G-06 4 186536215 186536215 G A SORBS2 Missense_Mutation p.P1013L 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 4 186544650 186544650 G A SORBS2 Missense_Mutation p.H741Y 0.67 tolerated(0.05) probably_damaging(0.969) TCGA-D3-A51G-06 4 186545032 186545032 G A SORBS2 Silent p.F613F 0.57 TCGA-D3-A51G-06 4 188924022 188924022 G A ZFP42 Missense_Mutation p.A21T 0.43 deleterious(0.05) benign(0.008) TCGA-D3-A51G-06 4 189013033 189013033 T C TRIML2 Missense_Mutation p.T220A 0.55 deleterious(0) benign(0.171) TCGA-D3-A51G-06 4 1985645 1985645 G A NELFA Missense_Mutation p.P422L 0.53 tolerated(0.3) probably_damaging(0.96) TCGA-D3-A51G-06 4 1985646 1985646 G A NELFA Missense_Mutation p.P422S 0.52 tolerated(0.21) probably_damaging(0.932) TCGA-D3-A51G-06 4 22820418 22820418 G A GBA3 Missense_Mutation p.G428R 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 4 2306447 2306447 G A ZFYVE28 Silent p.P540P 0.26 TCGA-D3-A51G-06 4 24543635 24543635 G A DHX15 Missense_Mutation p.P449L 0.27 deleterious(0) benign(0.296) TCGA-D3-A51G-06 4 25760646 25760646 G A SEL1L3 Silent p.I1000I 0.57 TCGA-D3-A51G-06 4 3213790 3213790 C T HTT Silent p.L2183L 0.51 TCGA-D3-A51G-06 4 3214386 3214386 C T HTT Missense_Mutation p.P2242S 0.24 possibly_damaging(0.703) TCGA-D3-A51G-06 4 36189078 36189078 T G ARAP2 Missense_Mutation p.K558T 0.44 deleterious(0) possibly_damaging(0.754) TCGA-D3-A51G-06 4 39458102 39458102 G A RPL9 Silent p.I105I 0.61 TCGA-D3-A51G-06 4 40045344 40045344 G A RP11-333E13.4 RNA 0.37 TCGA-D3-A51G-06 4 40439985 40439985 G A RBM47 Missense_Mutation p.S309L 0.27 deleterious(0.04) probably_damaging(0.968) TCGA-D3-A51G-06 4 41646618 41646618 G A LIMCH1 Missense_Mutation p.R358K 0.53 tolerated(1) benign(0.004) TCGA-D3-A51G-06 4 42403140 42403140 C T SHISA3 Missense_Mutation p.S130L 0.50 tolerated(0.13) benign(0.04) TCGA-D3-A51G-06 4 42545975 42545975 G A ATP8A1 Missense_Mutation p.R561C 0.61 deleterious(0) probably_damaging(0.98) TCGA-D3-A51G-06 4 47589126 47589126 C T ATP10D Missense_Mutation p.P1282S 0.48 tolerated(0.3) possibly_damaging(0.742) TCGA-D3-A51G-06 4 52861586 52861586 G A LRRC66 Silent p.L534L 0.27 TCGA-D3-A51G-06 4 52943099 52943099 C T SPATA18 Missense_Mutation p.R305W 0.66 deleterious(0) probably_damaging(0.916) TCGA-D3-A51G-06 4 55946024 55946024 C T KDR 3'UTR 0.23 TCGA-D3-A51G-06 4 56230311 56230311 C T SRD5A3 Silent p.F145F 0.24 TCGA-D3-A51G-06 4 5667300 5667300 G A EVC2 Missense_Mutation p.A316V 0.46 tolerated(1) benign(0.023) TCGA-D3-A51G-06 4 57173805 57173805 G T KIAA1211 Silent p.L75L 0.73 TCGA-D3-A51G-06 4 57796967 57796967 C T REST Missense_Mutation p.P648L 0.23 tolerated(0.27) benign(0) TCGA-D3-A51G-06 4 57840144 57840144 G A NOA1 Missense_Mutation p.P397S 0.18 tolerated(0.14) probably_damaging(0.919) TCGA-D3-A51G-06 4 57842672 57842672 C T NOA1 Silent p.E360E 0.51 TCGA-D3-A51G-06 4 62453097 62453097 C T LPHN3 Missense_Mutation p.P70S 0.25 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A51G-06 4 6349713 6349713 T C PPP2R2C Missense_Mutation p.N217S 0.48 deleterious(0.03) benign(0.062) TCGA-D3-A51G-06 4 69403501 69403501 C T UGT2B17 Missense_Mutation p.V479I 0.24 tolerated(0.17) benign(0.431) TCGA-D3-A51G-06 4 69535767 69535767 G A UGT2B15 Silent p.F190F 0.30 TCGA-D3-A51G-06 4 70146488 70146488 C T UGT2B28 Silent p.I90I 0.53 TCGA-D3-A51G-06 4 70346474 70346474 G A UGT2B4 Missense_Mutation p.H489Y 0.52 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A51G-06 4 7056685 7056685 C T TADA2B Silent p.S389S 0.30 TCGA-D3-A51G-06 4 71063662 71063662 C T ODAM Missense_Mutation p.P55S 0.55 tolerated(0.1) probably_damaging(0.932) TCGA-D3-A51G-06 4 71509179 71509179 G A ENAM Missense_Mutation p.G679E 0.31 tolerated(1) benign(0.012) TCGA-D3-A51G-06 4 77676127 77676127 C T SHROOM3 Silent p.S1497S 0.48 TCGA-D3-A51G-06 4 7774552 7774552 G A AFAP1 Missense_Mutation p.P750S 0.22 tolerated(0.18) benign(0.004) TCGA-D3-A51G-06 4 79371428 79371428 G A FRAS1 Missense_Mutation p.G2133D 0.13 benign(0.001) TCGA-D3-A51G-06 4 79461888 79461888 G A FRAS1 Missense_Mutation p.M3883I 0.16 probably_damaging(0.995) TCGA-D3-A51G-06 4 8055966 8055966 G A ABLIM2 Silent p.S257S 0.28 TCGA-D3-A51G-06 4 8055967 8055967 G A ABLIM2 Missense_Mutation p.S257F 0.29 deleterious(0) possibly_damaging(0.892) TCGA-D3-A51G-06 4 8416601 8416601 G A ACOX3 Nonsense_Mutation p.Q145* 0.54 TCGA-D3-A51G-06 4 84368028 84368028 G A HELQ Missense_Mutation p.T451I 0.33 deleterious(0.01) benign(0.232) TCGA-D3-A51G-06 4 941906 941906 C T TMEM175 Silent p.I52I 0.29 TCGA-D3-A51G-06 4 94693336 94693336 C T GRID2 Missense_Mutation p.P904L 0.24 deleterious_low_confidence(0.04) benign(0.358) TCGA-D3-A51G-06 4 94693338 94693338 C T GRID2 Silent p.L905L 0.24 TCGA-D3-A51G-06 4 95575786 95575786 C T PDLIM5 Missense_Mutation p.L516F 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 4 98865055 98865055 G A STPG2 Missense_Mutation p.P346L 0.43 tolerated(0.56) benign(0) TCGA-D3-A51G-06 5 10403570 10403570 C T MARCH6 Missense_Mutation p.P417S 0.80 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 5 11023012 11023012 C T CTNND2 Silent p.S956S 0.83 TCGA-D3-A51G-06 5 110842044 110842044 C T STARD4 Missense_Mutation p.E47K 0.73 deleterious(0) possibly_damaging(0.749) TCGA-D3-A51G-06 5 112364469 112364469 G A MCC Intron 0.75 TCGA-D3-A51G-06 5 118970772 118970772 C T FAM170A 3'UTR 0.77 TCGA-D3-A51G-06 5 121767706 121767706 G A SNCAIP Missense_Mutation p.E409K 0.73 tolerated(0.08) benign(0.015) TCGA-D3-A51G-06 5 121787096 121787096 G A SNCAIP Missense_Mutation p.E852K 0.69 deleterious(0.01) possibly_damaging(0.545) TCGA-D3-A51G-06 5 125894994 125894994 G A ALDH7A1 Missense_Mutation p.P316S 0.76 tolerated(0.26) benign(0.04) TCGA-D3-A51G-06 5 126776451 126776451 G A MEGF10 Missense_Mutation p.G752R 0.81 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 5 128932249 128932249 T A ADAMTS19 Intron 0.09 TCGA-D3-A51G-06 5 130506715 130506715 T C LYRM7 Translation_Start_Site p.M1? 1.00 deleterious_low_confidence(0) benign(0.136) TCGA-D3-A51G-06 5 131606686 131606686 C T PDLIM4 Missense_Mutation p.P136S 0.81 tolerated(0.47) benign(0.003) TCGA-D3-A51G-06 5 134782469 134782469 C T C5orf20 Silent p.Q110Q 0.73 TCGA-D3-A51G-06 5 134782503 134782503 G A C5orf20 Missense_Mutation p.S99L 0.72 tolerated_low_confidence(0.46) benign(0) TCGA-D3-A51G-06 5 13911546 13911546 C T DNAH5 Missense_Mutation p.M531I 0.80 benign(0.074) TCGA-D3-A51G-06 5 13914635 13914635 C T DNAH5 Silent p.L438L 0.88 TCGA-D3-A51G-06 5 140182296 140182296 C T PCDHA3 Missense_Mutation p.S505L 0.80 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-D3-A51G-06 5 140188692 140188692 G A PCDHA4 Silent p.T640T 0.73 TCGA-D3-A51G-06 5 140202306 140202306 G A PCDHA5 Missense_Mutation p.E316K 0.50 tolerated_low_confidence(0.33) benign(0.207) TCGA-D3-A51G-06 5 140262444 140262444 G A PCDHA13 Silent p.R197R 0.65 TCGA-D3-A51G-06 5 140263981 140263981 C T PCDHA13 Silent p.L710L 0.72 TCGA-D3-A51G-06 5 140553695 140553695 G A PCDHB7 Missense_Mutation p.G427R 0.60 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A51G-06 5 140573265 140573265 G A PCDHB10 Silent p.K380K 0.13 TCGA-D3-A51G-06 5 145834772 145834772 T A TCERG1 Silent p.P71P 0.66 TCGA-D3-A51G-06 5 147889410 147889410 A G HTR4 Silent p.L229L 0.64 TCGA-D3-A51G-06 5 150310880 150310880 C T ZNF300P1 RNA 0.60 TCGA-D3-A51G-06 5 150928991 150928991 G A FAT2 Missense_Mutation p.P1552S 0.80 benign(0.005) TCGA-D3-A51G-06 5 153026613 153026613 G A GRIA1 Missense_Mutation p.D126N 0.73 tolerated(0.61) benign(0.305) TCGA-D3-A51G-06 5 156479463 156479463 C T HAVCR1 Silent p.T194T 0.79 TCGA-D3-A51G-06 5 158711910 158711910 A T UBLCP1 Splice_Site p.X310_splice 0.14 TCGA-D3-A51G-06 5 167489074 167489074 C T TENM2 Missense_Mutation p.S440L 0.68 tolerated(0.84) benign(0) TCGA-D3-A51G-06 5 178409974 178409974 G A GRM6 Silent p.T791T 0.69 TCGA-D3-A51G-06 5 178409975 178409975 G A GRM6 Missense_Mutation p.T791I 0.68 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 5 178579179 178579179 C T ADAMTS2 Silent p.G531G 0.55 TCGA-D3-A51G-06 5 19473577 19473577 C A CDH18 Missense_Mutation p.D711Y 0.20 tolerated(0.1) probably_damaging(0.916) TCGA-D3-A51G-06 5 19544045 19544045 C T CDH18 Silent p.R441R 0.79 TCGA-D3-A51G-06 5 35740308 35740308 C T SPEF2 Missense_Mutation p.S1090F 0.85 deleterious(0) possibly_damaging(0.548) TCGA-D3-A51G-06 5 35740309 35740309 C T SPEF2 Silent p.S1090S 0.36 TCGA-D3-A51G-06 5 35954246 35954246 G A UGT3A1 3'UTR 0.90 TCGA-D3-A51G-06 5 35954281 35954281 C T UGT3A1 3'UTR 0.85 TCGA-D3-A51G-06 5 36269561 36269561 C T RANBP3L Missense_Mutation p.G67S 0.74 tolerated(0.38) benign(0.007) TCGA-D3-A51G-06 5 41049521 41049521 G A MROH2B Silent p.I454I 0.91 TCGA-D3-A51G-06 5 41158841 41158841 G A C6 Missense_Mutation p.L635F 0.21 tolerated(0.25) benign(0.024) TCGA-D3-A51G-06 5 45303799 45303799 G A HCN1 Missense_Mutation p.A507V 0.85 deleterious(0) benign(0.138) TCGA-D3-A51G-06 5 61923180 61923180 A G IPO11 3'UTR 0.69 TCGA-D3-A51G-06 5 639262 639262 T G CEP72 Missense_Mutation p.L422R 0.89 deleterious(0.02) probably_damaging(0.935) TCGA-D3-A51G-06 5 68809847 68809847 C T OCLN Nonsense_Mutation p.R268* 0.81 TCGA-D3-A51G-06 5 79615918 79615918 C T SPZ1 5'UTR 0.88 TCGA-D3-A51G-06 5 80476026 80476026 G A RASGRF2 Missense_Mutation p.E907K 0.74 deleterious(0.01) possibly_damaging(0.752) TCGA-D3-A51G-06 5 80770329 80770329 G A SSBP2 Missense_Mutation p.P162L 0.64 deleterious(0.01) benign(0.303) TCGA-D3-A51G-06 5 89941887 89941887 G A GPR98 Missense_Mutation p.D1001N 0.62 probably_damaging(0.945) TCGA-D3-A51G-06 5 94727108 94727108 C T FAM81B Silent p.F5F 0.79 TCGA-D3-A51G-06 5 96315573 96315573 C T LNPEP Missense_Mutation p.L251F 0.86 deleterious(0.02) probably_damaging(1) TCGA-D3-A51G-06 6 100841743 100841743 C T SIM1 Missense_Mutation p.R397K 0.22 tolerated(0.62) probably_damaging(0.992) TCGA-D3-A51G-06 6 105244589 105244589 G A HACE1 Missense_Mutation p.P253S 0.64 tolerated(0.1) benign(0.007) TCGA-D3-A51G-06 6 111543257 111543257 G A SLC16A10 Missense_Mutation p.G456E 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 6 117114040 117114040 C T GPRC6A Silent p.L682L 0.58 TCGA-D3-A51G-06 6 117127942 117127942 G A GPRC6A Missense_Mutation p.T309I 0.18 tolerated(0.17) benign(0.014) TCGA-D3-A51G-06 6 117710693 117710693 C T ROS1 Missense_Mutation p.E527K 0.49 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A51G-06 6 122734774 122734774 C T HSF2 Silent p.S145S 0.51 TCGA-D3-A51G-06 6 125233676 125233676 G A RP11-510H23.1 RNA 0.40 TCGA-D3-A51G-06 6 128134908 128134908 C T THEMIS Missense_Mutation p.G293E 0.27 tolerated(0.1) benign(0.133) TCGA-D3-A51G-06 6 128294275 128294275 G A PTPRK Silent p.F1393F 0.24 TCGA-D3-A51G-06 6 129781471 129781471 T C LAMA2 Splice_Site p.X2331_splice 0.55 TCGA-D3-A51G-06 6 132938786 132938786 C T TAAR2 Missense_Mutation p.G187R 0.57 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 6 136600907 136600907 C T BCLAF1 Missense_Mutation p.R33Q 0.23 deleterious_low_confidence(0) unknown(0) TCGA-D3-A51G-06 6 136923045 136923045 A C MAP3K5 Missense_Mutation p.C918G 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 6 138655765 138655765 G A KIAA1244 Missense_Mutation p.E1928K 0.58 deleterious(0.04) benign(0.201) TCGA-D3-A51G-06 6 143094279 143094279 C A HIVEP2 Missense_Mutation p.A533S 0.17 tolerated(0.14) possibly_damaging(0.593) TCGA-D3-A51G-06 6 144508385 144508385 C T STX11 Silent p.I207I 0.27 TCGA-D3-A51G-06 6 152469461 152469461 G A SYNE1 Missense_Mutation p.S8232F 0.42 benign(0.163) TCGA-D3-A51G-06 6 152473196 152473196 G A SYNE1 Silent p.N8070N 0.30 TCGA-D3-A51G-06 6 152639303 152639303 C T SYNE1 Silent p.K5495K 0.40 TCGA-D3-A51G-06 6 159192345 159192345 G A EZR Missense_Mutation p.P297L 0.63 deleterious(0) probably_damaging(0.934) TCGA-D3-A51G-06 6 159206477 159206477 G A EZR Missense_Mutation p.L111F 0.57 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 6 159682250 159682250 C T FNDC1 Missense_Mutation p.P1735S 0.31 deleterious(0) possibly_damaging(0.681) TCGA-D3-A51G-06 6 161007487 161007487 C T LPA Missense_Mutation p.E1375K 0.25 deleterious(0.04) benign(0.316) TCGA-D3-A51G-06 6 162864378 162864378 G A PARK2 Silent p.F45F 0.48 TCGA-D3-A51G-06 6 168464329 168464329 C T FRMD1 Silent p.E252E 0.32 TCGA-D3-A51G-06 6 170072375 170072375 C T WDR27 Missense_Mutation p.E103K 0.21 tolerated(0.09) benign(0.121) TCGA-D3-A51G-06 6 26124437 26124437 T G HIST1H2AC 5'UTR 0.21 TCGA-D3-A51G-06 6 26448586 26448586 G C BTN3A3 Missense_Mutation p.E276Q 0.09 deleterious(0.02) benign(0.282) TCGA-D3-A51G-06 6 27925809 27925809 C T OR2B6 Missense_Mutation p.S264L 0.12 deleterious(0) probably_damaging(0.957) TCGA-D3-A51G-06 6 28540237 28540237 C T SCAND3 Nonsense_Mutation p.W1143* 0.48 TCGA-D3-A51G-06 6 28543494 28543494 A G SCAND3 Silent p.L330L 0.62 TCGA-D3-A51G-06 6 29342287 29342287 G A OR12D3 Missense_Mutation p.R260C 0.66 tolerated(0.05) benign(0.16) TCGA-D3-A51G-06 6 30104730 30104730 G A TRIM40 5'Flank 0.50 TCGA-D3-A51G-06 6 30309562 30309562 C G TRIM39 Missense_Mutation p.F361L 0.26 tolerated(0.69) probably_damaging(0.957) TCGA-D3-A51G-06 6 30670975 30670975 G A MDC1 Missense_Mutation p.S1924F 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A51G-06 6 30951662 30951662 C T MUC21 5'UTR 0.55 TCGA-D3-A51G-06 6 31599163 31599163 G A PRRC2A Missense_Mutation p.G905R 0.30 unknown(0) TCGA-D3-A51G-06 6 31599164 31599164 G A PRRC2A Missense_Mutation p.G905E 0.31 unknown(0) TCGA-D3-A51G-06 6 31746952 31746952 G C VARS Missense_Mutation p.P1173R 0.14 deleterious(0.02) probably_damaging(0.957) TCGA-D3-A51G-06 6 31895485 31895485 C T CFB 5'UTR 0.67 TCGA-D3-A51G-06 6 31901557 31901557 C T CFB Missense_Mutation p.R143C 0.70 deleterious(0) benign(0.095) TCGA-D3-A51G-06 6 32011626 32011626 C T TNXB Silent p.Q239Q 0.70 TCGA-D3-A51G-06 6 32150705 32150705 G A AGER Missense_Mutation p.P202S 0.17 tolerated(0.39) benign(0.008) TCGA-D3-A51G-06 6 33653534 33653534 C T ITPR3 Missense_Mutation p.S1866F 0.22 deleterious(0.03) possibly_damaging(0.516) TCGA-D3-A51G-06 6 35565179 35565179 G A FKBP5 Missense_Mutation p.H171Y 0.25 tolerated(0.22) benign(0.211) TCGA-D3-A51G-06 6 36259245 36259245 G A PNPLA1 Silent p.G118G 0.18 TCGA-D3-A51G-06 6 36724064 36724064 C T CPNE5 Silent p.P289P 0.68 TCGA-D3-A51G-06 6 37618062 37618062 C T MDGA1 Missense_Mutation p.V478M 0.50 deleterious(0.02) possibly_damaging(0.841) TCGA-D3-A51G-06 6 38771051 38771051 G A DNAH8 Missense_Mutation p.E783K 0.18 benign(0.002) TCGA-D3-A51G-06 6 38795982 38795982 G A DNAH8 Missense_Mutation p.R1152K 0.60 benign(0.004) TCGA-D3-A51G-06 6 38840454 38840454 C T DNAH8 Missense_Mutation p.A2161V 0.68 probably_damaging(1) TCGA-D3-A51G-06 6 38885853 38885853 C T DNAH8 Silent p.L3270L 0.24 TCGA-D3-A51G-06 6 39267425 39267425 G A KCNK17 Silent p.I259I 0.14 TCGA-D3-A51G-06 6 4041149 4041149 C T PRPF4B Missense_Mutation p.S519L 0.31 tolerated(0.09) benign(0.32) TCGA-D3-A51G-06 6 41002663 41002663 C T UNC5CL Missense_Mutation p.E51K 0.15 deleterious_low_confidence(0.04) benign(0.108) TCGA-D3-A51G-06 6 43109933 43109933 C T PTK7 Missense_Mutation p.S656F 0.62 deleterious(0) probably_damaging(0.986) TCGA-D3-A51G-06 6 43227287 43227287 G A TTBK1 Missense_Mutation p.E423K 0.73 possibly_damaging(0.496) TCGA-D3-A51G-06 6 43418790 43418790 C T DLK2 Silent p.L213L 0.69 TCGA-D3-A51G-06 6 43420809 43420809 C T DLK2 Missense_Mutation p.G69S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 6 46135701 46135701 C T ENPP5 Missense_Mutation p.R100Q 0.61 deleterious(0.05) benign(0.197) TCGA-D3-A51G-06 6 47253756 47253756 G A TNFRSF21 Silent p.S224S 0.07 TCGA-D3-A51G-06 6 49803007 49803007 A T CRISP1 3'UTR 0.56 TCGA-D3-A51G-06 6 49976967 49976967 G A DEFB110 Missense_Mutation p.P25S 0.65 deleterious_low_confidence(0.01) benign(0.127) TCGA-D3-A51G-06 6 53769222 53769222 A C LRRC1 Missense_Mutation p.N318H 0.64 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 6 54806647 54806647 C T FAM83B Missense_Mutation p.R960C 0.10 tolerated(0.06) benign(0.003) TCGA-D3-A51G-06 6 55989061 55989061 G A COL21A1 Silent p.G560G 0.40 TCGA-D3-A51G-06 6 57246934 57246934 G T PRIM2 Nonsense_Mutation p.E221* 0.10 TCGA-D3-A51G-06 6 63990209 63990209 G A LGSN Missense_Mutation p.P416L 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 6 63990680 63990680 G A LGSN Missense_Mutation p.S259F 0.46 deleterious(0.04) benign(0.224) TCGA-D3-A51G-06 6 63990693 63990693 C T LGSN Missense_Mutation p.E255K 0.37 deleterious(0) probably_damaging(0.977) TCGA-D3-A51G-06 6 69703821 69703821 G A BAI3 Silent p.R632R 0.21 TCGA-D3-A51G-06 6 70890393 70890393 C T COL19A1 Missense_Mutation p.P918L 0.12 tolerated(0.06) probably_damaging(0.99) TCGA-D3-A51G-06 6 73821044 73821044 C T KCNQ5 Missense_Mutation p.S348L 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 6 7584638 7584638 G A DSP Silent p.K2381K 0.75 TCGA-D3-A51G-06 6 7584639 7584639 G A DSP Missense_Mutation p.E2382K 0.73 benign(0.113) TCGA-D3-A51G-06 6 76640701 76640701 C T IMPG1 Missense_Mutation p.E738K 0.23 deleterious(0.03) benign(0.032) TCGA-D3-A51G-06 6 80877513 80877513 C T BCKDHB Silent p.F154F 0.22 TCGA-D3-A51G-06 6 82459715 82459715 G A FAM46A Silent p.N342N 0.34 TCGA-D3-A51G-06 6 88049888 88049888 A T SMIM8 Missense_Mutation p.I64F 0.14 deleterious(0.01) benign(0.097) TCGA-D3-A51G-06 6 90604243 90604243 C T GJA10 Missense_Mutation p.T19I 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 6 90604719 90604719 C T GJA10 Missense_Mutation p.L178F 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 6 96034537 96034537 G T MANEA Missense_Mutation p.K74N 0.20 tolerated(0.3) benign(0.019) TCGA-D3-A51G-06 6 96651333 96651333 A G FUT9 Missense_Mutation p.N101S 0.27 tolerated(0.5) benign(0.086) TCGA-D3-A51G-06 7 100392956 100392956 C T ZAN Missense_Mutation p.P2663L 0.29 unknown(0) TCGA-D3-A51G-06 7 100468252 100468252 C T TRIP6 Missense_Mutation p.L296F 0.54 deleterious(0) probably_damaging(0.989) TCGA-D3-A51G-06 7 100607746 100607746 G A MUC3A Silent p.R631R 0.10 TCGA-D3-A51G-06 7 100842081 100842081 G A MOGAT3 Missense_Mutation p.R107W 0.55 deleterious(0) benign(0.117) TCGA-D3-A51G-06 7 100961490 100961490 G A RABL5 Silent p.L41L 0.49 TCGA-D3-A51G-06 7 101192473 101192473 C T COL26A1 Missense_Mutation p.P321L 0.41 tolerated(0.3) probably_damaging(0.926) TCGA-D3-A51G-06 7 103151295 103151295 C T RELN Intron 0.42 TCGA-D3-A51G-06 7 103206843 103206843 C T RELN Silent p.Q1588Q 0.50 TCGA-D3-A51G-06 7 104748150 104748150 C T KMT2E Silent p.S1082S 0.46 TCGA-D3-A51G-06 7 106508904 106508904 G A PIK3CG Missense_Mutation p.G300R 0.19 tolerated(0.4) possibly_damaging(0.464) TCGA-D3-A51G-06 7 11022696 11022696 G A PHF14 Silent p.K270K 0.32 TCGA-D3-A51G-06 7 112461939 112461939 G A C7orf60 Nonsense_Mutation p.R360* 0.48 TCGA-D3-A51G-06 7 115596840 115596840 C T TFEC Missense_Mutation p.G92E 0.26 deleterious(0.01) benign(0.043) TCGA-D3-A51G-06 7 116435842 116435842 C T MET Missense_Mutation p.P1329L 0.50 tolerated(0.1) benign(0.096) TCGA-D3-A51G-06 7 116435843 116435843 C T MET Silent p.P1329P 0.51 TCGA-D3-A51G-06 7 117199535 117199535 G A CFTR Silent p.V470V 0.32 TCGA-D3-A51G-06 7 121726102 121726102 A G AASS Silent p.S716S 0.49 TCGA-D3-A51G-06 7 123332413 123332413 G A WASL Silent p.I445I 0.30 TCGA-D3-A51G-06 7 12680050 12680050 G A SCIN Missense_Mutation p.G497R 0.21 deleterious(0.02) probably_damaging(1) TCGA-D3-A51G-06 7 127637939 127637939 C T SND1 Intron 0.45 TCGA-D3-A51G-06 7 131912262 131912262 G A PLXNA4 Silent p.I610I 0.52 TCGA-D3-A51G-06 7 135376959 135376959 C T SLC13A4 Intron 0.32 TCGA-D3-A51G-06 7 139661906 139661906 C T TBXAS1 Silent p.F383F 0.24 TCGA-D3-A51G-06 7 139724604 139724604 C A PARP12 Missense_Mutation p.R621L 0.17 tolerated(0.37) probably_damaging(0.999) TCGA-D3-A51G-06 7 141478805 141478805 G A TAS2R4 Missense_Mutation p.G173S 0.45 tolerated(0.43) benign(0.026) TCGA-D3-A51G-06 7 141755436 141755436 C T MGAM Silent p.L1131L 0.59 TCGA-D3-A51G-06 7 142020937 142020937 G A TRBV5-1 Missense_Mutation p.G15E 0.45 deleterious(0.02) possibly_damaging(0.696) TCGA-D3-A51G-06 7 142572876 142572876 C T TRPV6 Silent p.G388G 0.23 TCGA-D3-A51G-06 7 142832372 142832372 G A PIP Missense_Mutation p.E61K 0.34 deleterious(0.01) possibly_damaging(0.485) TCGA-D3-A51G-06 7 142880740 142880740 G A TAS2R39 Missense_Mutation p.V77I 0.45 tolerated(0.41) benign(0.017) TCGA-D3-A51G-06 7 143175418 143175418 G A TAS2R41 Silent p.V151V 0.24 TCGA-D3-A51G-06 7 143453362 143453362 C T CTAGE6 Missense_Mutation p.D464N 0.14 tolerated(0.22) benign(0.018) TCGA-D3-A51G-06 7 143806719 143806719 G A OR2A2 Missense_Mutation p.G15E 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A51G-06 7 146805363 146805363 C T CNTNAP2 Silent p.I225I 0.58 TCGA-D3-A51G-06 7 148080841 148080841 C T CNTNAP2 Silent p.A1192A 0.36 TCGA-D3-A51G-06 7 148768477 148768477 G A ZNF786 Missense_Mutation p.R463C 0.18 tolerated(0.23) benign(0.04) TCGA-D3-A51G-06 7 149419622 149419622 G A KRBA1 Silent p.Q192Q 0.36 TCGA-D3-A51G-06 7 149430970 149430970 C T KRBA1 Missense_Mutation p.P975L 0.21 tolerated(0.24) possibly_damaging(0.851) TCGA-D3-A51G-06 7 150390074 150390074 G A GIMAP2 Missense_Mutation p.E234K 0.47 tolerated(0.2) benign(0.209) TCGA-D3-A51G-06 7 150731374 150731374 G A ABCB8 Silent p.A141A 0.18 TCGA-D3-A51G-06 7 150761399 150761399 C T SLC4A2 Silent p.A54A 0.44 TCGA-D3-A51G-06 7 150935148 150935148 G A CHPF2 Missense_Mutation p.R567Q 0.48 tolerated(0.2) benign(0.153) TCGA-D3-A51G-06 7 151800385 151800385 A T GALNT11 Intron 0.57 TCGA-D3-A51G-06 7 157396738 157396738 C T PTPRN2 Missense_Mutation p.E792K 0.49 deleterious(0.01) possibly_damaging(0.459) TCGA-D3-A51G-06 7 1586815 1586815 G A TMEM184A Missense_Mutation p.P339S 0.67 tolerated(0.75) benign(0.004) TCGA-D3-A51G-06 7 158935212 158935212 C T VIPR2 Missense_Mutation p.R26Q 0.17 tolerated(0.73) benign(0.067) TCGA-D3-A51G-06 7 20738086 20738086 G A ABCB5 Nonsense_Mutation p.W689* 0.55 TCGA-D3-A51G-06 7 23339025 23339025 G A MALSU1 Silent p.R18R 0.35 TCGA-D3-A51G-06 7 27181462 27181462 G A HOXA5 Missense_Mutation p.R269C 0.56 deleterious(0) possibly_damaging(0.856) TCGA-D3-A51G-06 7 35244195 35244195 C T TBX20 Splice_Site p.X297_splice 0.88 TCGA-D3-A51G-06 7 35280490 35280490 C T TBX20 Splice_Site p.X271_splice 0.23 TCGA-D3-A51G-06 7 38370122 38370122 C T TRGV8 Missense_Mutation p.G59E 0.44 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A51G-06 7 41729504 41729504 G A INHBA Missense_Mutation p.P342L 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 7 43436450 43436450 G A HECW1 Missense_Mutation p.G198E 0.49 tolerated(0.12) benign(0.012) TCGA-D3-A51G-06 7 44012813 44012813 G A POLR2J4 RNA 0.38 TCGA-D3-A51G-06 7 48092411 48092411 G A C7orf57 Silent p.K240K 0.39 TCGA-D3-A51G-06 7 48312493 48312493 T A ABCA13 Missense_Mutation p.I1077N 0.67 benign(0.006) TCGA-D3-A51G-06 7 51092902 51092902 G A COBL Silent p.S1224S 0.47 TCGA-D3-A51G-06 7 51111250 51111250 G A COBL Silent p.S412S 0.44 TCGA-D3-A51G-06 7 5410232 5410232 G A TNRC18 Silent p.F1331F 0.33 TCGA-D3-A51G-06 7 55540610 55540610 G A VOPP1 Missense_Mutation p.P153S 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A51G-06 7 55912352 55912352 C T SEPT14 Missense_Mutation p.D79N 0.60 tolerated(0.53) probably_damaging(0.917) TCGA-D3-A51G-06 7 57188761 57188761 C T ZNF479 Missense_Mutation p.E121K 0.50 tolerated(0.26) benign(0.01) TCGA-D3-A51G-06 7 65557595 65557595 G A ASL Missense_Mutation p.E399K 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 7 6730526 6730526 G A ZNF12 Missense_Mutation p.H683Y 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A51G-06 7 6731972 6731972 G A ZNF12 Silent p.L201L 0.31 TCGA-D3-A51G-06 7 6732100 6732100 C G ZNF12 Missense_Mutation p.G158A 0.28 tolerated(0.53) probably_damaging(0.929) TCGA-D3-A51G-06 7 72891688 72891688 A C BAZ1B Silent p.V701V 0.47 TCGA-D3-A51G-06 7 73153189 73153189 C T ABHD11 5'UTR 0.62 TCGA-D3-A51G-06 7 73483003 73483003 G A ELN Silent p.G716G 0.46 TCGA-D3-A51G-06 7 75192297 75192297 G A HIP1 Missense_Mutation p.P321L 0.18 deleterious(0) probably_damaging(0.945) TCGA-D3-A51G-06 7 75877511 75877511 C A SRRM3 Nonsense_Mutation p.S80* 0.44 TCGA-D3-A51G-06 7 76062288 76062288 C T ZP3 Missense_Mutation p.P159L 0.46 deleterious(0) probably_damaging(0.978) TCGA-D3-A51G-06 7 82585078 82585078 G A PCLO Missense_Mutation p.P1731S 0.45 unknown(0) TCGA-D3-A51G-06 7 82595413 82595413 C T PCLO Missense_Mutation p.E1231K 0.47 unknown(0) TCGA-D3-A51G-06 7 83643565 83643565 G A SEMA3A Missense_Mutation p.S257F 0.47 tolerated(0.08) benign(0.199) TCGA-D3-A51G-06 7 86394372 86394372 G A GRM3 5'UTR 0.43 TCGA-D3-A51G-06 7 86394808 86394808 C T GRM3 Missense_Mutation p.S116F 0.44 tolerated(0.69) probably_damaging(0.987) TCGA-D3-A51G-06 7 87407205 87407205 C T RUNDC3B Missense_Mutation p.S314F 0.51 tolerated(0.72) benign(0.142) TCGA-D3-A51G-06 7 90895446 90895446 C T FZD1 Silent p.S417S 0.66 TCGA-D3-A51G-06 7 91707125 91707125 T C AKAP9 Missense_Mutation p.I2294T 0.19 benign(0.332) TCGA-D3-A51G-06 7 92098627 92098627 C T ERVW-1 Missense_Mutation p.D357N 0.24 deleterious(0.04) possibly_damaging(0.681) TCGA-D3-A51G-06 7 92761354 92761354 C T SAMD9L Missense_Mutation p.D1311N 0.24 tolerated(0.28) benign(0.008) TCGA-D3-A51G-06 7 97935801 97935801 C T BAIAP2L1 Silent p.T397T 0.27 TCGA-D3-A51G-06 8 100568703 100568703 C T VPS13B Nonsense_Mutation p.R1616* 0.33 TCGA-D3-A51G-06 8 101092508 101092508 C T RGS22 Missense_Mutation p.E65K 0.38 tolerated(0.08) possibly_damaging(0.697) TCGA-D3-A51G-06 8 101609037 101609037 C T SNX31 Missense_Mutation p.G270R 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 8 101717162 101717162 G A PABPC1 Missense_Mutation p.R604C 0.35 tolerated(0.18) benign(0.041) TCGA-D3-A51G-06 8 102212260 102212260 A T ZNF706 Silent p.L67L 0.47 TCGA-D3-A51G-06 8 104394720 104394720 A G CTHRC1 Silent p.L208L 0.49 TCGA-D3-A51G-06 8 105405118 105405118 A T DPYS Missense_Mutation p.V446E 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 8 105405119 105405119 C T DPYS Missense_Mutation p.V446M 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 8 107719106 107719106 C T OXR1 Missense_Mutation p.L454F 0.30 tolerated(0.18) benign(0.003) TCGA-D3-A51G-06 8 110424524 110424524 G A PKHD1L1 Missense_Mutation p.E706K 0.33 tolerated(0.21) possibly_damaging(0.655) TCGA-D3-A51G-06 8 110510903 110510903 T C PKHD1L1 Silent p.C3577C 0.31 TCGA-D3-A51G-06 8 113649090 113649090 C T CSMD3 Missense_Mutation p.G1224D 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 8 114111003 114111003 G A CSMD3 Missense_Mutation p.S300F 0.35 deleterious(0.02) possibly_damaging(0.786) TCGA-D3-A51G-06 8 119941138 119941138 C T TNFRSF11B Missense_Mutation p.R144K 0.39 tolerated(0.74) benign(0.002) TCGA-D3-A51G-06 8 120629431 120629431 G A ENPP2 Silent p.T210T 0.41 TCGA-D3-A51G-06 8 124992888 124992888 C T FER1L6 Missense_Mutation p.S416F 0.44 deleterious(0) probably_damaging(0.942) TCGA-D3-A51G-06 8 133023193 133023193 C T EFR3A 3'UTR 0.53 TCGA-D3-A51G-06 8 133047030 133047030 G A OC90 Missense_Mutation p.P244L 0.25 deleterious(0.03) possibly_damaging(0.869) TCGA-D3-A51G-06 8 134072357 134072357 G A SLA Missense_Mutation p.P57S 0.29 tolerated(0.17) benign(0.015) TCGA-D3-A51G-06 8 134108517 134108517 C T TG Missense_Mutation p.P2491L 0.39 tolerated(0.11) benign(0) TCGA-D3-A51G-06 8 134232832 134232832 G A WISP1 Missense_Mutation p.G120S 0.38 tolerated(0.07) possibly_damaging(0.803) TCGA-D3-A51G-06 8 139151314 139151314 C T FAM135B Silent p.K1272K 0.22 TCGA-D3-A51G-06 8 139153460 139153460 G T FAM135B Missense_Mutation p.N1257K 0.53 deleterious(0.01) possibly_damaging(0.864) TCGA-D3-A51G-06 8 139158222 139158222 G A FAM135B Silent p.L1174L 0.31 TCGA-D3-A51G-06 8 139160798 139160798 C T FAM135B Missense_Mutation p.G1138E 0.29 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 8 139164168 139164168 C T FAM135B Silent p.G850G 0.40 TCGA-D3-A51G-06 8 13948115 13948115 C T SGCZ Missense_Mutation p.G259E 0.41 tolerated(0.26) probably_damaging(0.981) TCGA-D3-A51G-06 8 139712376 139712376 G A COL22A1 Silent p.F857F 0.27 TCGA-D3-A51G-06 8 141572694 141572694 G A AGO2 Missense_Mutation p.R126C 0.50 deleterious(0) possibly_damaging(0.88) TCGA-D3-A51G-06 8 143784872 143784872 C T LY6K 3'UTR 0.33 TCGA-D3-A51G-06 8 144408428 144408428 G A TOP1MT Silent p.A149A 0.38 TCGA-D3-A51G-06 8 144940609 144940609 G A EPPK1 Silent p.F2271F 0.06 TCGA-D3-A51G-06 8 144942717 144942717 C T EPPK1 Missense_Mutation p.G1569R 0.22 probably_damaging(1) TCGA-D3-A51G-06 8 145738661 145738661 G A RECQL4 Silent p.A801A 0.44 TCGA-D3-A51G-06 8 145738662 145738662 G A RECQL4 Missense_Mutation p.A801V 0.46 deleterious(0.04) possibly_damaging(0.69) TCGA-D3-A51G-06 8 146076258 146076258 G A COMMD5 Missense_Mutation p.R156W 0.38 deleterious(0.03) benign(0.059) TCGA-D3-A51G-06 8 17132396 17132396 C T VPS37A Missense_Mutation p.P191S 0.16 tolerated(0.27) benign(0.035) TCGA-D3-A51G-06 8 17581312 17581312 G A MTUS1 Missense_Mutation p.S773L 0.34 tolerated(0.08) benign(0.124) TCGA-D3-A51G-06 8 19811727 19811727 C T LPL Missense_Mutation p.T213I 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 8 2044108 2044108 G A MYOM2 Missense_Mutation p.G716E 0.38 deleterious(0) probably_damaging(0.984) TCGA-D3-A51G-06 8 21956044 21956044 C T FAM160B2 Silent p.I293I 0.38 TCGA-D3-A51G-06 8 21984860 21984860 G C HR Silent p.A365A 0.40 TCGA-D3-A51G-06 8 23217644 23217644 G A LOXL2 Missense_Mutation p.P164S 0.47 deleterious(0) possibly_damaging(0.824) TCGA-D3-A51G-06 8 24188700 24188700 C G ADAM28 Missense_Mutation p.L381V 0.41 tolerated(0.42) benign(0.001) TCGA-D3-A51G-06 8 24254782 24254782 G A ADAMDEC1 Splice_Site p.X147_splice 0.38 TCGA-D3-A51G-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.42 deleterious(0.01) benign(0.01) TCGA-D3-A51G-06 8 27462705 27462705 C T CLU Missense_Mutation p.E189K 0.45 tolerated(0.23) benign(0.046) TCGA-D3-A51G-06 8 27880848 27880848 C G NUGGC Missense_Mutation p.G793R 0.52 tolerated_low_confidence(0.96) benign(0.001) TCGA-D3-A51G-06 8 2876008 2876008 G A CSMD1 Nonsense_Mutation p.R2674* 0.45 TCGA-D3-A51G-06 8 28997622 28997622 G A KIF13B Silent p.V857V 0.47 TCGA-D3-A51G-06 8 30701840 30701840 G A TEX15 Missense_Mutation p.S1565F 0.37 tolerated(0.44) benign(0.139) TCGA-D3-A51G-06 8 30958413 30958413 G C WRN Missense_Mutation p.G677A 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 8 3226873 3226873 G A CSMD1 Silent p.I934I 0.33 TCGA-D3-A51G-06 8 32621854 32621854 G A NRG1 Silent p.S624S 0.50 TCGA-D3-A51G-06 8 33318914 33318914 G A FUT10 Silent p.T19T 0.06 TCGA-D3-A51G-06 8 35624458 35624458 G A UNC5D Silent p.Q784Q 0.43 TCGA-D3-A51G-06 8 37734744 37734744 G A RAB11FIP1 Nonsense_Mutation p.Q233* 0.41 TCGA-D3-A51G-06 8 39114840 39114840 G A ADAM32 Missense_Mutation p.E714K 0.50 tolerated(0.12) benign(0.052) TCGA-D3-A51G-06 8 39845428 39845428 G A IDO2 Missense_Mutation p.S176N 0.27 tolerated(0.08) possibly_damaging(0.828) TCGA-D3-A51G-06 8 41551602 41551602 C T ANK1 Missense_Mutation p.E1157K 0.27 deleterious(0) benign(0.341) TCGA-D3-A51G-06 8 41591588 41591588 C T ANK1 Splice_Site p.X77_splice 0.41 TCGA-D3-A51G-06 8 43197399 43197399 G A POTEA RNA 0.36 TCGA-D3-A51G-06 8 4494906 4494906 G A CSMD1 Missense_Mutation p.S87L 0.50 probably_damaging(0.995) TCGA-D3-A51G-06 8 48691182 48691182 G A PRKDC Silent p.F3896F 0.33 TCGA-D3-A51G-06 8 52321411 52321411 G A PXDNL Missense_Mutation p.P925S 0.31 tolerated(0.42) benign(0.027) TCGA-D3-A51G-06 8 55540310 55540310 C T RP1 Nonsense_Mutation p.Q1290* 0.34 TCGA-D3-A51G-06 8 57079014 57079014 G A PLAG1 Missense_Mutation p.P431S 0.36 tolerated(0.41) benign(0.043) TCGA-D3-A51G-06 8 59509987 59509987 G A NSMAF Missense_Mutation p.S615F 0.52 deleterious(0.01) possibly_damaging(0.776) TCGA-D3-A51G-06 8 67064668 67064668 G A TRIM55 Missense_Mutation p.E348K 0.38 tolerated(0.17) benign(0.011) TCGA-D3-A51G-06 8 67417683 67417683 C T C8orf46 Missense_Mutation p.P67L 0.40 tolerated(0.3) benign(0.005) TCGA-D3-A51G-06 8 76456045 76456045 G A HNF4G Splice_Site p.X30_splice 0.43 TCGA-D3-A51G-06 8 7698684 7698684 G A DEFB104A Missense_Mutation p.D63N 0.25 tolerated(1) benign(0.004) TCGA-D3-A51G-06 8 82439279 82439279 C T FABP12 Silent p.K108K 0.50 TCGA-D3-A51G-06 8 95541354 95541354 G A KIAA1429 Missense_Mutation p.P275L 0.41 tolerated(0.06) benign(0.005) TCGA-D3-A51G-06 8 95541355 95541355 G A KIAA1429 Missense_Mutation p.P275S 0.41 tolerated(0.08) benign(0.058) TCGA-D3-A51G-06 9 101765855 101765855 G A COL15A1 Missense_Mutation p.E396K 0.30 tolerated_low_confidence(0.16) benign(0.001) TCGA-D3-A51G-06 9 104133226 104133227 - GGAGAA BAAT In_Frame_Ins p.L153_P154insLL 0.39 TCGA-D3-A51G-06 9 104432834 104432834 G A GRIN3A Silent p.L620L 0.26 TCGA-D3-A51G-06 9 107289169 107289169 C T OR13C4 Missense_Mutation p.G108R 0.51 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.46 TCGA-D3-A51G-06 9 107298801 107298801 G A OR13C3 Silent p.F98F 0.27 TCGA-D3-A51G-06 9 107581983 107581983 G A ABCA1 Missense_Mutation p.S1042F 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 9 107624034 107624034 A G ABCA1 Missense_Mutation p.F157L 0.65 tolerated(0.05) benign(0.002) TCGA-D3-A51G-06 9 111618037 111618037 G A ACTL7B Silent p.S58S 0.49 TCGA-D3-A51G-06 9 111653612 111653612 G A IKBKAP Missense_Mutation p.R1011C 0.28 deleterious(0) probably_damaging(0.979) TCGA-D3-A51G-06 9 112005953 112005953 G A EPB41L4B Missense_Mutation p.H452Y 0.28 tolerated(0.22) benign(0.345) TCGA-D3-A51G-06 9 115626678 115626678 A C SNX30 Missense_Mutation p.K418T 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-D3-A51G-06 9 117113183 117113183 T C AKNA Silent p.P1059P 0.64 TCGA-D3-A51G-06 9 117138749 117138749 G A AKNA Silent p.L446L 0.19 TCGA-D3-A51G-06 9 118949816 118949816 G A PAPPA Missense_Mutation p.E267K 0.21 tolerated(0.18) possibly_damaging(0.893) TCGA-D3-A51G-06 9 119976641 119976641 C T ASTN2 Silent p.K337K 0.56 TCGA-D3-A51G-06 9 123725027 123725027 G C C5 Missense_Mutation p.R1476G 0.43 tolerated(1) benign(0.028) TCGA-D3-A51G-06 9 125316096 125316096 C T OR1N2 Silent p.I216I 0.24 TCGA-D3-A51G-06 9 125390981 125390981 C T OR1B1 Missense_Mutation p.M278I 0.53 tolerated(0.46) benign(0.437) TCGA-D3-A51G-06 9 125423983 125423983 G A OR1L1 5'Flank 0.56 TCGA-D3-A51G-06 9 131038442 131038442 G A SWI5 Silent p.Q6Q 0.28 TCGA-D3-A51G-06 9 131515760 131515760 G A ZER1 Silent p.F143F 0.64 TCGA-D3-A51G-06 9 132627616 132627616 G A USP20 Missense_Mutation p.G216R 0.52 deleterious(0) probably_damaging(0.992) TCGA-D3-A51G-06 9 133507359 133507359 C T FUBP3 Silent p.F461F 0.26 TCGA-D3-A51G-06 9 135781444 135781444 A G TSC1 Silent p.F507F 0.30 TCGA-D3-A51G-06 9 135978192 135978192 G A RALGDS Silent p.A629A 0.36 TCGA-D3-A51G-06 9 136341422 136341422 C T SLC2A6 Missense_Mutation p.G167R 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 9 136513099 136513099 C T DBH Missense_Mutation p.L386F 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 9 137622164 137622164 G A COL5A1 Missense_Mutation p.G336E 0.66 benign(0.092) TCGA-D3-A51G-06 9 139118626 139118626 G T QSOX2 Silent p.T141T 0.29 TCGA-D3-A51G-06 9 140126124 140126124 C T SLC34A3 5'UTR 0.05 TCGA-D3-A51G-06 9 140138012 140138012 C T TUBB4B 3'UTR 0.25 TCGA-D3-A51G-06 9 21187354 21187354 G A IFNA4 Silent p.F59F 0.25 TCGA-D3-A51G-06 9 32632916 32632916 G A TAF1L Missense_Mutation p.R888C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A51G-06 9 3330272 3330272 G A RFX3 Missense_Mutation p.A154V 0.28 deleterious(0.02) benign(0.006) TCGA-D3-A51G-06 9 33442216 33442216 G A AQP3 Intron 0.27 TCGA-D3-A51G-06 9 35555193 35555193 C T RUSC2 Silent p.S717S 0.20 TCGA-D3-A51G-06 9 35825674 35825674 G A FAM221B Missense_Mutation p.S162F 0.18 deleterious(0.01) benign(0.168) TCGA-D3-A51G-06 9 40774474 40774474 C A ZNF658 Silent p.G267G 0.49 TCGA-D3-A51G-06 9 463569 463569 G A DOCK8 Missense_Mutation p.E2041K 0.20 deleterious(0) possibly_damaging(0.813) TCGA-D3-A51G-06 9 6558609 6558609 C A GLDC Missense_Mutation p.V668L 0.49 deleterious(0.01) possibly_damaging(0.447) TCGA-D3-A51G-06 9 72006631 72006631 G A FAM189A2 Missense_Mutation p.G422R 0.68 tolerated(0.41) benign(0.288) TCGA-D3-A51G-06 9 72064648 72064648 G A APBA1 Missense_Mutation p.S678F 0.28 deleterious(0.02) probably_damaging(0.971) TCGA-D3-A51G-06 9 73457934 73457934 G A TRPM3 Silent p.D262D 0.62 TCGA-D3-A51G-06 9 73461501 73461501 G A TRPM3 Nonsense_Mutation p.R157* 0.09 TCGA-D3-A51G-06 9 75369767 75369767 G A TMC1 Silent p.S236S 0.47 TCGA-D3-A51G-06 9 78848477 78848477 G A PCSK5 Missense_Mutation p.G944E 0.28 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 9 79326090 79326090 G A PRUNE2 Missense_Mutation p.S367F 0.84 deleterious(0) probably_damaging(0.999) TCGA-D3-A51G-06 9 82323082 82323082 G A TLE4 Missense_Mutation p.R329Q 0.15 tolerated(0.64) benign(0.439) TCGA-D3-A51G-06 9 85630815 85630815 C T RASEF Missense_Mutation p.E224K 0.26 deleterious(0.01) possibly_damaging(0.824) TCGA-D3-A51G-06 9 90501248 90501248 C T SPATA31E1 Missense_Mutation p.P616S 0.40 tolerated(0.14) possibly_damaging(0.891) TCGA-D3-A51G-06 9 95077335 95077335 C T NOL8 Silent p.K524K 0.11 TCGA-D3-A51G-06 9 95396730 95396730 A G IPPK Missense_Mutation p.Y370H 0.18 deleterious(0.01) benign(0.018) TCGA-D3-A51G-06 9 95481454 95481454 G A BICD2 Silent p.A491A 0.55 TCGA-D3-A51G-06 9 95481455 95481455 G A BICD2 Missense_Mutation p.A491V 0.56 deleterious(0.03) benign(0.054) TCGA-D3-A51G-06 9 97321142 97321142 C T FBP2 3'UTR 0.21 TCGA-D3-A51G-06 9 99314084 99314084 G A CDC14B Missense_Mutation p.P164L 0.57 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 9 99711863 99711863 T C HIATL2 Silent p.P123P 0.17 TCGA-D3-A51G-06 X 100118164 100118164 C T NOX1 Missense_Mutation p.M107I 0.89 tolerated(0.26) benign(0.02) TCGA-D3-A51G-06 X 102337212 102337212 C T NXF3 Silent p.T287T 0.78 TCGA-D3-A51G-06 X 104961395 104961395 G A IL1RAPL2 Missense_Mutation p.G270R 0.88 deleterious(0.01) probably_damaging(1) TCGA-D3-A51G-06 X 107938070 107938070 C T COL4A5 Silent p.I1580I 0.90 TCGA-D3-A51G-06 X 110496411 110496411 G A CAPN6 Missense_Mutation p.P111S 0.75 tolerated(0.22) benign(0.001) TCGA-D3-A51G-06 X 128877993 128877993 G A XPNPEP2 Silent p.Q60Q 0.80 TCGA-D3-A51G-06 X 135427865 135427865 C T GPR112 Missense_Mutation p.S667F 0.87 deleterious(0) possibly_damaging(0.888) TCGA-D3-A51G-06 X 140983188 140983188 C T MAGEC3 Missense_Mutation p.P348L 0.75 tolerated(0.39) benign(0.001) TCGA-D3-A51G-06 X 140995832 140995832 C T MAGEC1 Missense_Mutation p.S881F 0.92 deleterious(0) unknown(0) TCGA-D3-A51G-06 X 147743680 147743680 G A AFF2 Silent p.L144L 0.88 TCGA-D3-A51G-06 X 148044308 148044308 C T AFF2 Silent p.S918S 0.86 TCGA-D3-A51G-06 X 149831996 149831996 C T MTM1 Nonsense_Mutation p.R520* 0.83 TCGA-D3-A51G-06 X 153216280 153216280 G A HCFC1 Missense_Mutation p.A1896V 0.89 deleterious(0) probably_damaging(0.956) TCGA-D3-A51G-06 X 18183003 18183003 G A BEND2 3'UTR 0.80 TCGA-D3-A51G-06 X 18265917 18265917 G A SCML2 Silent p.L514L 0.64 TCGA-D3-A51G-06 X 18660157 18660157 C T RS1 Missense_Mutation p.M214I 0.93 tolerated(0.25) benign(0.268) TCGA-D3-A51G-06 X 19428062 19428062 G A MAP3K15 Silent p.A576A 0.67 TCGA-D3-A51G-06 X 22129637 22129637 C T PHEX Missense_Mutation p.L378F 0.87 deleterious(0) probably_damaging(1) TCGA-D3-A51G-06 X 24089794 24089794 C T EIF2S3 Missense_Mutation p.L378F 0.82 tolerated(0.13) benign(0.099) TCGA-D3-A51G-06 X 24089795 24089795 T A EIF2S3 Missense_Mutation p.L378H 0.82 deleterious(0) probably_damaging(0.952) TCGA-D3-A51G-06 X 27766188 27766188 G A DCAF8L2 Silent p.R392R 0.71 TCGA-D3-A51G-06 X 27766203 27766203 G A DCAF8L2 Silent p.R397R 0.67 TCGA-D3-A51G-06 X 31227664 31227664 G A DMD Missense_Mutation p.P3172S 0.85 possibly_damaging(0.825) TCGA-D3-A51G-06 X 31227665 31227665 G A DMD Silent p.V3171V 0.84 TCGA-D3-A51G-06 X 3227751 3227751 C T MXRA5 3'UTR 0.85 TCGA-D3-A51G-06 X 3235774 3235774 G A MXRA5 Missense_Mutation p.S1983F 0.90 deleterious(0) probably_damaging(0.995) TCGA-D3-A51G-06 X 3238336 3238336 C T MXRA5 Missense_Mutation p.G1797E 0.96 tolerated(0.65) benign(0.005) TCGA-D3-A51G-06 X 3238337 3238337 C T MXRA5 Missense_Mutation p.G1797R 0.96 tolerated(0.37) benign(0.001) TCGA-D3-A51G-06 X 41043859 41043859 C T USP9X Silent p.G1163G 0.91 TCGA-D3-A51G-06 X 41045827 41045827 C T USP9X Missense_Mutation p.P1206S 0.78 deleterious(0) probably_damaging(0.986) TCGA-D3-A51G-06 X 53285072 53285072 G A IQSEC2 Silent p.V303V 0.93 TCGA-D3-A51G-06 X 53436077 53436077 G A SMC1A Silent p.A487A 0.84 TCGA-D3-A51G-06 X 54264797 54264797 G A WNK3 Missense_Mutation p.S1331L 0.79 deleterious(0) possibly_damaging(0.869) TCGA-D3-A51G-06 X 73066268 73066268 G A XIST RNA 0.85 TCGA-D3-A51G-06 X 73749080 73749080 C T SLC16A2 Silent p.S401S 0.86 TCGA-D3-A51G-06 X 73963876 73963876 C T KIAA2022 Silent p.R172R 0.86 TCGA-D3-A51G-06 X 84363957 84363957 C T SATL1 Silent p.T6T 0.75 TCGA-D3-A51G-06 X 84537324 84537324 C T POF1B Splice_Site p.X550_splice 0.92 TCGA-D3-A51H-06 11 33572653 33572653 A G KIAA1549L Missense_Mutation p.Y893C 0.07 deleterious(0) probably_damaging(0.999) TCGA-D3-A51H-06 11 40136990 40136990 C T LRRC4C Missense_Mutation p.D285N 0.06 tolerated(0.2) benign(0.16) TCGA-D3-A51H-06 11 55873324 55873324 G A OR8H2 Missense_Mutation p.G269E 0.07 deleterious(0.03) probably_damaging(0.954) TCGA-D3-A51H-06 12 49691295 49691295 C T PRPH Silent p.N384N 0.07 TCGA-D3-A51H-06 12 70049372 70049372 C T BEST3 Missense_Mutation p.R441K 0.30 deleterious(0.03) benign(0.427) TCGA-D3-A51H-06 12 7843136 7843136 G A GDF3 Silent p.L145L 0.06 TCGA-D3-A51H-06 13 49951211 49951211 T G CAB39L Silent p.T56T 0.06 TCGA-D3-A51H-06 19 43519394 43519394 G A PSG11 Nonsense_Mutation p.Q280* 0.04 TCGA-D3-A51H-06 19 52272999 52272999 C T FPR2 3'UTR 0.17 TCGA-D3-A51H-06 19 52715946 52715946 C T PPP2R1A Missense_Mutation p.R171W 0.09 deleterious(0.03) benign(0.114) TCGA-D3-A51H-06 19 55019316 55019316 G A LAIR2 Missense_Mutation p.G94E 0.06 tolerated(0.09) benign(0.026) TCGA-D3-A51H-06 19 56459286 56459286 A G NLRP8 Silent p.P6P 0.06 TCGA-D3-A51H-06 1 11190632 11190632 G A MTOR Missense_Mutation p.T1856I 0.07 tolerated(0.49) benign(0.055) TCGA-D3-A51H-06 1 12918881 12918881 C T PRAMEF2 Missense_Mutation p.P6L 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A51H-06 1 197026176 197026176 G A F13B Missense_Mutation p.R380C 0.06 deleterious(0.02) possibly_damaging(0.901) TCGA-D3-A51H-06 1 247769018 247769018 C T OR2G3 Missense_Mutation p.T44I 0.04 tolerated(0.12) benign(0.003) TCGA-D3-A51H-06 1 77558147 77558147 G A PIGK Missense_Mutation p.P367L 0.07 tolerated_low_confidence(0.08) probably_damaging(0.963) TCGA-D3-A51H-06 1 95356735 95356735 C A SLC44A3 Missense_Mutation p.A511E 0.06 deleterious(0) probably_damaging(0.936) TCGA-D3-A51H-06 20 31374370 31374370 C T DNMT3B Silent p.S123S 0.07 TCGA-D3-A51H-06 2 166179814 166179814 G A SCN2A Missense_Mutation p.R607Q 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A51H-06 3 126724987 126724987 G A PLXNA1 Missense_Mutation p.D655N 0.06 tolerated(1) benign(0.07) TCGA-D3-A51H-06 3 134920399 134920399 G A EPHB1 Missense_Mutation p.M738I 0.04 deleterious(0.02) possibly_damaging(0.896) TCGA-D3-A51H-06 5 1089128 1089128 G A SLC12A7 Missense_Mutation p.S153F 0.05 deleterious(0.04) possibly_damaging(0.857) TCGA-D3-A51H-06 5 13830227 13830227 G A DNAH5 Silent p.L2053L 0.09 TCGA-D3-A51H-06 5 140221470 140221470 G A PCDHA8 Silent p.E188E 0.07 TCGA-D3-A51H-06 5 149924963 149924963 C T NDST1 Missense_Mutation p.P687L 0.04 deleterious(0) probably_damaging(0.997) TCGA-D3-A51H-06 5 160761829 160761829 G A GABRB2 Silent p.I254I 0.08 TCGA-D3-A51H-06 5 26881385 26881385 C T CDH9 Missense_Mutation p.D744N 0.06 deleterious(0) possibly_damaging(0.857) TCGA-D3-A51H-06 5 36039597 36039597 G A UGT3A2 Missense_Mutation p.P353S 0.06 tolerated(0.09) possibly_damaging(0.856) TCGA-D3-A51H-06 5 871667 871667 G A BRD9 Missense_Mutation p.P466S 0.05 tolerated(0.27) benign(0.201) TCGA-D3-A51H-06 6 167708053 167708053 C T UNC93A Missense_Mutation p.L46F 0.05 deleterious(0.01) possibly_damaging(0.9) TCGA-D3-A51H-06 7 128415721 128415721 C T OPN1SW Missense_Mutation p.G42S 0.11 deleterious(0.02) possibly_damaging(0.786) TCGA-D3-A51H-06 7 135269644 135269644 C T NUP205 Silent p.F369F 0.09 TCGA-D3-A51H-06 7 143095438 143095438 G A EPHA1 Silent p.T480T 0.09 TCGA-D3-A51H-06 X 108647691 108647691 C T GUCY2F Missense_Mutation p.R664K 0.06 deleterious(0.01) benign(0.334) TCGA-D3-A51H-06 X 11312924 11312924 T A AMELX Missense_Mutation p.L6I 0.07 tolerated(0.06) probably_damaging(0.971) TCGA-D3-A51H-06 X 130215656 130215656 C T ARHGAP36 Missense_Mutation p.P6L 0.08 tolerated_low_confidence(0.21) probably_damaging(0.997) TCGA-D3-A51H-06 X 140995349 140995349 C T MAGEC1 Missense_Mutation p.S720F 0.10 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A51H-06 X 140995773 140995773 C T MAGEC1 Silent p.S861S 0.08 TCGA-D3-A51H-06 X 36103547 36103547 G A CHDC2 Missense_Mutation p.G178E 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 10 114177656 114177656 C T ACSL5 Missense_Mutation p.S480F 0.49 deleterious(0) probably_damaging(0.978) TCGA-D3-A51J-06 10 115958993 115958993 C T TDRD1 Missense_Mutation p.S149F 0.30 deleterious(0.05) probably_damaging(0.919) TCGA-D3-A51J-06 10 125528186 125528186 G A CPXM2 Silent p.G385G 0.39 TCGA-D3-A51J-06 10 21120160 21120160 G A NEBL Missense_Mutation p.L546F 0.51 deleterious(0.02) possibly_damaging(0.694) TCGA-D3-A51J-06 10 22680666 22680666 C T SPAG6 Silent p.P338P 0.33 TCGA-D3-A51J-06 10 50943208 50943208 C T OGDHL 3'UTR 0.33 TCGA-D3-A51J-06 10 53893611 53893611 G C PRKG1 Missense_Mutation p.R316T 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 10 61829428 61829428 G A ANK3 Silent p.G3737G 0.35 TCGA-D3-A51J-06 10 63851035 63851035 C T ARID5B Silent p.L605L 0.23 TCGA-D3-A51J-06 10 70145866 70145866 G A RUFY2 Missense_Mutation p.H259Y 0.29 deleterious(0) benign(0.395) TCGA-D3-A51J-06 10 82098891 82098891 C T DYDC1 Missense_Mutation p.E121K 0.33 tolerated(0.16) benign(0.26) TCGA-D3-A51J-06 10 82122220 82122220 G A DYDC2 Silent p.K21K 0.39 TCGA-D3-A51J-06 11 110035894 110035894 C T ZC3H12C Missense_Mutation p.P695L 0.32 deleterious(0.04) possibly_damaging(0.52) TCGA-D3-A51J-06 11 117387190 117387190 G A DSCAML1 Missense_Mutation p.A652V 0.17 tolerated(0.2) benign(0.008) TCGA-D3-A51J-06 11 118765155 118765155 C T CXCR5 Missense_Mutation p.P301L 0.18 tolerated(0.09) benign(0.016) TCGA-D3-A51J-06 11 121440892 121440892 C T SORL1 Missense_Mutation p.R1084C 0.24 deleterious(0.01) possibly_damaging(0.883) TCGA-D3-A51J-06 11 12376356 12376356 C T MICALCL Missense_Mutation p.H619Y 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A51J-06 11 123811255 123811255 C T OR4D5 Missense_Mutation p.P311L 0.27 tolerated(0.1) benign(0) TCGA-D3-A51J-06 11 124267017 124267017 G A OR8B3 Silent p.F77F 0.29 TCGA-D3-A51J-06 11 124440662 124440662 C T OR8A1 Missense_Mutation p.S233F 0.31 deleterious(0) probably_damaging(0.994) TCGA-D3-A51J-06 11 124745143 124745143 G A ROBO3 Missense_Mutation p.G737E 0.32 deleterious(0) probably_damaging(0.995) TCGA-D3-A51J-06 11 1258276 1258276 C T MUC5B Missense_Mutation p.S1060F 0.19 unknown(0) TCGA-D3-A51J-06 11 130275938 130275938 C T ADAMTS8 Missense_Mutation p.D729N 0.26 tolerated(0.11) probably_damaging(1) TCGA-D3-A51J-06 11 18054916 18054916 C T TPH1 Missense_Mutation p.E103K 0.26 tolerated(0.13) benign(0.076) TCGA-D3-A51J-06 11 22248857 22248857 G A ANO5 Missense_Mutation p.D125N 0.27 tolerated(0.09) benign(0.059) TCGA-D3-A51J-06 11 22399165 22399165 C T SLC17A6 Missense_Mutation p.S543F 0.15 deleterious(0) possibly_damaging(0.568) TCGA-D3-A51J-06 11 2356716 2356716 C T CD81-AS1 Intron 0.27 TCGA-D3-A51J-06 11 34492564 34492564 C A CAT Missense_Mutation p.D498E 0.25 tolerated(0.17) benign(0.045) TCGA-D3-A51J-06 11 397656 397656 G A PKP3 Silent p.K354K 0.30 TCGA-D3-A51J-06 11 48347093 48347093 C T OR4C3 Missense_Mutation p.H201Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.35 tolerated(0.09) benign(0.141) TCGA-D3-A51J-06 11 4903714 4903714 G A OR51T1 Nonsense_Mutation p.W222* 0.16 TCGA-D3-A51J-06 11 4936713 4936713 G A OR51G2 Missense_Mutation p.H61Y 0.29 deleterious(0) possibly_damaging(0.635) TCGA-D3-A51J-06 11 4967973 4967973 T A OR51A4 Missense_Mutation p.M120L 0.20 deleterious(0) possibly_damaging(0.777) TCGA-D3-A51J-06 11 50003441 50003441 C T OR4C12 Silent p.V199V 0.21 TCGA-D3-A51J-06 11 55761311 55761311 G A OR5F1 Missense_Mutation p.S264F 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A51J-06 11 55927515 55927515 G A OR8K5 Silent p.S93S 0.31 TCGA-D3-A51J-06 11 58602051 58602051 C T GLYATL2 Missense_Mutation p.E246K 0.31 tolerated(0.92) benign(0.113) TCGA-D3-A51J-06 11 62156693 62156693 G A ASRGL1 Missense_Mutation p.V194I 0.33 tolerated(0.2) benign(0.082) TCGA-D3-A51J-06 11 62606644 62606644 C T WDR74 Missense_Mutation p.G79S 0.17 tolerated(0.58) benign(0.001) TCGA-D3-A51J-06 11 63149694 63149694 G A SLC22A9 Missense_Mutation p.E340K 0.25 deleterious(0.03) benign(0.216) TCGA-D3-A51J-06 11 64111274 64111274 C T CCDC88B Missense_Mutation p.S448L 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A51J-06 11 6452559 6452559 C T HPX Missense_Mutation p.G424D 0.23 deleterious(0.03) possibly_damaging(0.847) TCGA-D3-A51J-06 11 64940062 64940062 C T SPDYC Nonsense_Mutation p.Q168* 0.16 TCGA-D3-A51J-06 11 65983993 65983993 C T PACS1 Missense_Mutation p.R270C 0.31 deleterious(0.02) probably_damaging(1) TCGA-D3-A51J-06 11 66102494 66102494 G A RIN1 Missense_Mutation p.P259L 0.22 tolerated(0.24) probably_damaging(0.999) TCGA-D3-A51J-06 11 66113636 66113636 C T B3GNT1 Missense_Mutation p.E378K 0.32 deleterious(0.04) benign(0.049) TCGA-D3-A51J-06 11 6867567 6867567 C T OR10A5 Silent p.S218S 0.24 TCGA-D3-A51J-06 11 68773055 68773055 G A MRGPRF Silent p.I241I 0.30 TCGA-D3-A51J-06 11 7324366 7324366 C T SYT9 Missense_Mutation p.P81L 0.24 deleterious(0.04) benign(0.09) TCGA-D3-A51J-06 11 75438588 75438588 G A MOGAT2 Missense_Mutation p.G127S 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A51J-06 11 77784179 77784179 G A NDUFC2 Missense_Mutation p.R59C 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 11 78380728 78380728 C T TENM4 Missense_Mutation p.G2221E 0.30 deleterious(0) possibly_damaging(0.724) TCGA-D3-A51J-06 11 7981729 7981729 G A NLRP10 Missense_Mutation p.S477F 0.32 tolerated(1) benign(0.138) TCGA-D3-A51J-06 11 85375616 85375616 G A CREBZF Silent p.L102L 0.26 TCGA-D3-A51J-06 11 89883650 89883650 G A NAALAD2 Missense_Mutation p.G162R 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A51J-06 11 93127688 93127688 G A CCDC67 Missense_Mutation p.E369K 0.33 deleterious(0.04) benign(0.44) TCGA-D3-A51J-06 12 110475222 110475222 G A ANKRD13A Missense_Mutation p.E546K 0.53 tolerated(0.61) benign(0.116) TCGA-D3-A51J-06 12 113407510 113407510 C T OAS3 Silent p.L1068L 0.25 TCGA-D3-A51J-06 12 113905968 113905968 C T LHX5 Silent p.L213L 0.27 TCGA-D3-A51J-06 12 114837342 114837342 C T TBX5 Missense_Mutation p.R113K 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 12 121176173 121176173 G A ACADS Missense_Mutation p.A239T 0.28 tolerated(0.56) probably_damaging(0.998) TCGA-D3-A51J-06 12 123068939 123068939 G A KNTC1 Silent p.L1126L 0.22 TCGA-D3-A51J-06 12 126068459 126068459 C T TMEM132B Silent p.V447V 0.30 TCGA-D3-A51J-06 12 13229028 13229028 C T KIAA1467 Silent p.S531S 0.23 TCGA-D3-A51J-06 12 13229038 13229038 G A KIAA1467 Missense_Mutation p.D535N 0.35 deleterious(0) probably_damaging(0.981) TCGA-D3-A51J-06 12 19646785 19646785 C T AEBP2 Missense_Mutation p.R347C 0.21 deleterious_low_confidence(0) benign(0.269) TCGA-D3-A51J-06 12 22068653 22068653 C A ABCC9 Missense_Mutation p.M255I 0.34 tolerated(0.06) benign(0.443) TCGA-D3-A51J-06 12 30792450 30792450 C T IPO8 Missense_Mutation p.G830R 0.32 deleterious(0) probably_damaging(0.956) TCGA-D3-A51J-06 12 33031904 33031904 C T PKP2 Missense_Mutation p.D96N 0.27 deleterious(0.04) benign(0.111) TCGA-D3-A51J-06 12 40699657 40699657 C T LRRK2 Missense_Mutation p.S1283F 0.23 tolerated(0.08) benign(0.109) TCGA-D3-A51J-06 12 47472821 47472821 C T AMIGO2 5'UTR 0.29 TCGA-D3-A51J-06 12 47472822 47472822 C T AMIGO2 5'UTR 0.30 TCGA-D3-A51J-06 12 49444252 49444252 G A KMT2D Missense_Mutation p.S1040F 0.22 possibly_damaging(0.862) TCGA-D3-A51J-06 12 49444719 49444719 G A KMT2D Missense_Mutation p.P916L 0.21 unknown(0) TCGA-D3-A51J-06 12 52961444 52961444 G T KRT74 Silent p.I463I 0.26 TCGA-D3-A51J-06 12 55420931 55420931 C T NEUROD4 Silent p.S236S 0.23 TCGA-D3-A51J-06 12 56994811 56994811 G A BAZ2A Nonsense_Mutation p.R1458* 0.29 TCGA-D3-A51J-06 12 57110376 57110376 G A NACA Intron 0.26 TCGA-D3-A51J-06 12 57397974 57397974 G A ZBTB39 Missense_Mutation p.S243F 0.19 deleterious(0.01) benign(0.224) TCGA-D3-A51J-06 12 69651614 69651614 C T CPSF6 Missense_Mutation p.P208L 0.27 deleterious(0.02) unknown(0) TCGA-D3-A51J-06 12 71286637 71286637 T A PTPRR Missense_Mutation p.K60I 0.37 deleterious_low_confidence(0) benign(0.306) TCGA-D3-A51J-06 12 72680607 72680607 C A TRHDE Missense_Mutation p.S309Y 0.16 deleterious(0) probably_damaging(0.975) TCGA-D3-A51J-06 12 72680608 72680608 C T TRHDE Silent p.S309S 0.16 TCGA-D3-A51J-06 12 73015526 73015526 G A TRHDE Silent p.R845R 0.19 TCGA-D3-A51J-06 12 7640607 7640607 C G CD163 Missense_Mutation p.W499C 0.29 deleterious(0) probably_damaging(0.991) TCGA-D3-A51J-06 12 80749683 80749683 A C OTOGL Missense_Mutation p.M1912L 0.26 tolerated(1) benign(0) TCGA-D3-A51J-06 12 81657103 81657103 C T PPFIA2 Missense_Mutation p.G1208R 0.40 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-D3-A51J-06 12 97137536 97137536 G A C12orf55 Missense_Mutation p.E2469K 0.39 tolerated(0.59) benign(0.022) TCGA-D3-A51J-06 12 988837 988837 C T WNK1 Silent p.F824F 0.18 TCGA-D3-A51J-06 13 102231659 102231659 G A ITGBL1 Missense_Mutation p.G203E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 13 109535436 109535436 G A MYO16 Silent p.G463G 0.30 TCGA-D3-A51J-06 13 20010380 20010380 C T TPTE2 Missense_Mutation p.E368K 0.35 deleterious(0.02) benign(0.043) TCGA-D3-A51J-06 13 23914670 23914670 G A SACS Silent p.V1115V 0.29 TCGA-D3-A51J-06 13 33095526 33095526 G A N4BP2L2 Missense_Mutation p.P83S 0.33 deleterious(0) probably_damaging(0.976) TCGA-D3-A51J-06 13 43175053 43175053 G A TNFSF11 Silent p.K156K 0.26 TCGA-D3-A51J-06 13 64321195 64321195 T A AL445989.1 Missense_Mutation p.Y88N 0.22 unknown(0) TCGA-D3-A51J-06 13 73334727 73334727 G A DIS3 Silent p.I911I 0.24 TCGA-D3-A51J-06 13 92345707 92345707 C T GPC5 Missense_Mutation p.R198C 0.27 deleterious(0.01) benign(0.082) TCGA-D3-A51J-06 13 99118704 99118704 G A STK24 Missense_Mutation p.P249S 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 14 101459632 101459632 G A SNORD114-31 RNA 0.33 TCGA-D3-A51J-06 14 106321113 106321113 C T IGHM Silent p.E292E 0.50 TCGA-D3-A51J-06 14 106586331 106586331 C T IGHV3-13 Missense_Mutation p.D52N 0.36 tolerated_low_confidence(0.27) benign(0.003) TCGA-D3-A51J-06 14 106725369 106725369 C T IGHV3-23 Silent p.G61G 0.16 TCGA-D3-A51J-06 14 70633872 70633872 C T SLC8A3 Missense_Mutation p.G423E 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 14 70634876 70634876 G A SLC8A3 Silent p.F88F 0.48 TCGA-D3-A51J-06 14 74205722 74205722 G A ELMSAN1 Silent p.A330A 0.23 TCGA-D3-A51J-06 14 74876283 74876283 C T SYNDIG1L Silent p.L55L 0.37 TCGA-D3-A51J-06 14 92171010 92171010 G A CATSPERB Missense_Mutation p.P168S 0.28 tolerated(0.93) benign(0.01) TCGA-D3-A51J-06 14 99924781 99924781 G A SETD3 Silent p.S170S 0.33 TCGA-D3-A51J-06 15 22368729 22368729 G A OR4M2 Missense_Mutation p.D52N 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A51J-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.11 tolerated(0.3) benign(0.009) TCGA-D3-A51J-06 15 24921353 24921353 C T NPAP1 Silent p.S113S 0.40 TCGA-D3-A51J-06 15 25223360 25223360 G A SNRPN Missense_Mutation p.G194S 0.27 tolerated(0.19) unknown(0) TCGA-D3-A51J-06 15 25446399 25446399 C T SNORD115-19 5'Flank 0.31 TCGA-D3-A51J-06 15 26792968 26792968 A C GABRB3 Nonsense_Mutation p.L465* 0.18 TCGA-D3-A51J-06 15 35219318 35219318 G A AQR Missense_Mutation p.P346S 0.17 tolerated(0.07) benign(0.141) TCGA-D3-A51J-06 15 37242588 37242588 G A MEIS2 Missense_Mutation p.S305F 0.31 deleterious(0) probably_damaging(0.979) TCGA-D3-A51J-06 15 40660900 40660900 G A DISP2 Missense_Mutation p.D863N 0.17 tolerated(0.35) benign(0.062) TCGA-D3-A51J-06 15 43991371 43991371 C T CKMT1A 3'UTR 0.33 TCGA-D3-A51J-06 15 52015842 52015842 C T LYSMD2 Missense_Mutation p.E204K 0.17 tolerated(0.09) benign(0.012) TCGA-D3-A51J-06 15 57913864 57913864 G A MYZAP Missense_Mutation p.R126K 0.20 tolerated(1) benign(0.002) TCGA-D3-A51J-06 15 65040732 65040732 G A RBPMS2 Silent p.S151S 0.17 TCGA-D3-A51J-06 15 66210372 66210372 C T MEGF11 Missense_Mutation p.G673E 0.32 deleterious(0) possibly_damaging(0.905) TCGA-D3-A51J-06 15 68020265 68020265 G A MAP2K5 Silent p.G352G 0.26 TCGA-D3-A51J-06 15 86807702 86807702 C T AGBL1 Missense_Mutation p.P388S 0.41 tolerated(0.19) benign(0.004) TCGA-D3-A51J-06 15 88669548 88669548 G A NTRK3 Silent p.F450F 0.25 TCGA-D3-A51J-06 15 91430287 91430287 G A FES Missense_Mutation p.D162N 0.38 tolerated(0.16) benign(0.244) TCGA-D3-A51J-06 15 94841682 94841682 C A MCTP2 Missense_Mutation p.P63Q 0.07 tolerated(0.45) benign(0.001) TCGA-D3-A51J-06 15 97328438 97328438 C T SPATA8 3'UTR 0.19 TCGA-D3-A51J-06 15 99251220 99251220 C T IGF1R Missense_Mutation p.P175L 0.30 tolerated(0.28) benign(0.011) TCGA-D3-A51J-06 16 1128877 1128877 C T SSTR5 Silent p.P3P 0.21 TCGA-D3-A51J-06 16 1388614 1388614 C T BAIAP3 Missense_Mutation p.R57C 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A51J-06 16 14341157 14341157 C T MKL2 Silent p.I680I 0.25 TCGA-D3-A51J-06 16 15839037 15839037 G C MYH11 Missense_Mutation p.C830W 0.33 probably_damaging(0.998) TCGA-D3-A51J-06 16 15851693 15851693 G A MYH11 Silent p.I529I 0.24 TCGA-D3-A51J-06 16 17252734 17252734 C T XYLT1 Missense_Mutation p.R441Q 0.18 tolerated(0.11) benign(0.126) TCGA-D3-A51J-06 16 19628037 19628037 G A C16orf62 Silent p.L466L 0.25 TCGA-D3-A51J-06 16 2093626 2093626 A T NTHL1 Silent p.V217V 0.10 TCGA-D3-A51J-06 16 20974752 20974752 A C DNAH3 Missense_Mutation p.V3485G 0.24 tolerated(0.06) probably_damaging(0.962) TCGA-D3-A51J-06 16 20974845 20974845 C T DNAH3 Nonsense_Mutation p.W3454* 0.20 TCGA-D3-A51J-06 16 2283125 2283125 C T E4F1 Missense_Mutation p.H333Y 0.27 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A51J-06 16 23099047 23099047 G A USP31 Nonsense_Mutation p.Q509* 0.22 TCGA-D3-A51J-06 16 27772855 27772855 C T KIAA0556 Silent p.S1251S 0.22 TCGA-D3-A51J-06 16 31286950 31286950 C T ITGAM Silent p.F313F 0.31 TCGA-D3-A51J-06 16 3165246 3165246 C T ZNF205 Intron 0.31 TCGA-D3-A51J-06 16 3639374 3639374 G A SLX4 Missense_Mutation p.P1422L 0.32 deleterious(0) possibly_damaging(0.452) TCGA-D3-A51J-06 16 51175907 51175907 C T SALL1 Missense_Mutation p.E76K 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A51J-06 16 66951586 66951586 G A CDH16 Missense_Mutation p.P30S 0.35 tolerated(0.08) probably_damaging(1) TCGA-D3-A51J-06 16 67862096 67862096 G A CENPT 3'UTR 0.23 TCGA-D3-A51J-06 16 684604 684604 T G C16orf13 Missense_Mutation p.E180D 0.21 deleterious_low_confidence(0.01) benign(0.388) TCGA-D3-A51J-06 16 69782869 69782869 G A NOB1 Silent p.V226V 0.25 TCGA-D3-A51J-06 16 735959 735959 C T WDR24 Missense_Mutation p.G495S 0.19 tolerated(0.09) possibly_damaging(0.544) TCGA-D3-A51J-06 16 77389947 77389947 C T ADAMTS18 Silent p.G450G 0.33 TCGA-D3-A51J-06 16 80667059 80667059 C G CDYL2 Missense_Mutation p.V231L 0.27 tolerated(0.26) benign(0.233) TCGA-D3-A51J-06 16 844144 844144 A G CHTF18 Silent p.R631R 0.26 TCGA-D3-A51J-06 17 10267746 10267746 G A MYH13 Silent p.S34S 0.29 TCGA-D3-A51J-06 17 10398410 10398410 C T MYH1 Missense_Mutation p.M1768I 0.22 tolerated(0.07) benign(0.213) TCGA-D3-A51J-06 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.24 tolerated(0.12) benign(0.252) TCGA-D3-A51J-06 17 10419639 10419639 G A MYH1 Silent p.D75D 0.26 TCGA-D3-A51J-06 17 10427974 10427974 G A MYH2 Missense_Mutation p.H1662Y 0.22 deleterious(0.01) benign(0.064) TCGA-D3-A51J-06 17 10433249 10433249 C T MYH2 Missense_Mutation p.R947K 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-D3-A51J-06 17 10541573 10541573 G A MYH3 Silent p.F1172F 0.33 TCGA-D3-A51J-06 17 10544474 10544474 C T MYH3 Missense_Mutation p.G698D 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 17 11660882 11660882 G A DNAH9 Missense_Mutation p.A2290T 0.07 benign(0.001) TCGA-D3-A51J-06 17 18069781 18069781 G A MYO15A Nonsense_Mutation p.W3298* 0.25 TCGA-D3-A51J-06 17 18906877 18906877 G A FAM83G Missense_Mutation p.H160Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 17 19319269 19319269 G A RNF112 Missense_Mutation p.M559I 0.29 tolerated(0.2) unknown(0) TCGA-D3-A51J-06 17 28417554 28417554 G A EFCAB5 Missense_Mutation p.D1267N 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 17 33806954 33806954 C T SLFN12L Missense_Mutation p.G92E 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 17 33984617 33984617 G A AP2B1 Splice_Site p.X599_splice 0.24 TCGA-D3-A51J-06 17 37898851 37898851 C T GRB7 Missense_Mutation p.S86F 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 17 37898852 37898852 C T GRB7 Silent p.S86S 0.16 TCGA-D3-A51J-06 17 38976675 38976675 C T KRT10 Missense_Mutation p.E290K 0.17 deleterious(0) probably_damaging(0.964) TCGA-D3-A51J-06 17 39092725 39092725 G A KRT23 Missense_Mutation p.S44F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51J-06 17 39139369 39139369 C T KRT40 Silent p.T153T 0.19 TCGA-D3-A51J-06 17 39521722 39521722 G A KRT33B Silent p.V224V 0.27 TCGA-D3-A51J-06 17 40874902 40874902 G A EZH1 Missense_Mutation p.P133L 0.20 deleterious(0) probably_damaging(0.997) TCGA-D3-A51J-06 17 40874903 40874903 G A EZH1 Missense_Mutation p.P133S 0.19 deleterious(0) probably_damaging(0.996) TCGA-D3-A51J-06 17 41939261 41939261 G A CD300LG Silent p.S327S 0.38 TCGA-D3-A51J-06 17 42855102 42855102 C T ADAM11 Silent p.S647S 0.18 TCGA-D3-A51J-06 17 44249329 44249329 G A KANSL1 Silent p.L61L 0.11 TCGA-D3-A51J-06 17 44249330 44249330 G A KANSL1 Silent p.S60S 0.11 TCGA-D3-A51J-06 17 47218680 47218680 G A B4GALNT2 Missense_Mutation p.G89E 0.25 tolerated(0.32) benign(0.024) TCGA-D3-A51J-06 17 47295184 47295184 G A ABI3 Silent p.K123K 0.24 TCGA-D3-A51J-06 17 4841131 4841131 G A SLC25A11 Missense_Mutation p.P284S 0.24 deleterious(0) probably_damaging(0.982) TCGA-D3-A51J-06 17 50008459 50008459 C T CA10 Nonsense_Mutation p.W57* 0.20 TCGA-D3-A51J-06 17 534807 534807 G A VPS53 Missense_Mutation p.P224S 0.25 tolerated(1) benign(0.004) TCGA-D3-A51J-06 17 57348352 57348352 G A GDPD1 Missense_Mutation p.D256N 0.26 tolerated(0.19) benign(0.301) TCGA-D3-A51J-06 17 57955646 57955646 C T TUBD1 Missense_Mutation p.R196Q 0.27 tolerated(1) benign(0.004) TCGA-D3-A51J-06 17 60813772 60813772 G A MARCH10 Missense_Mutation p.P486L 0.26 deleterious(0.04) benign(0.086) TCGA-D3-A51J-06 17 62856152 62856152 G A LRRC37A3 Missense_Mutation p.P1371L 0.36 deleterious(0.04) possibly_damaging(0.78) TCGA-D3-A51J-06 17 62856182 62856182 G A LRRC37A3 Missense_Mutation p.S1361F 0.24 deleterious(0.03) possibly_damaging(0.495) TCGA-D3-A51J-06 17 74278107 74278107 G A QRICH2 Silent p.T1201T 0.12 TCGA-D3-A51J-06 17 76167943 76167943 G A SYNGR2 Missense_Mutation p.D201N 0.23 tolerated(0.11) possibly_damaging(0.697) TCGA-D3-A51J-06 18 28609499 28609499 G A DSC3 Silent p.G150G 0.46 TCGA-D3-A51J-06 18 31323763 31323763 C T ASXL3 Silent p.S1317S 0.36 TCGA-D3-A51J-06 18 34320693 34320693 C T FHOD3 Silent p.I1042I 0.30 TCGA-D3-A51J-06 18 347255 347255 G A COLEC12 Missense_Mutation p.R123C 0.32 deleterious(0.03) possibly_damaging(0.725) TCGA-D3-A51J-06 18 50705414 50705414 C T DCC Nonsense_Mutation p.R501* 0.46 TCGA-D3-A51J-06 18 56363619 56363619 C T MALT1 Missense_Mutation p.P133L 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 18 56615411 56615411 G A ZNF532 Missense_Mutation p.D940N 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A51J-06 19 10250743 10250743 G A DNMT1 Missense_Mutation p.S1262F 0.13 deleterious(0) probably_damaging(0.998) TCGA-D3-A51J-06 19 12154733 12154733 G A ZNF878 Missense_Mutation p.L495F 0.29 deleterious(0) benign(0.369) TCGA-D3-A51J-06 19 15740185 15740185 C T CYP4F8 RNA 0.36 TCGA-D3-A51J-06 19 16238325 16238325 C G RAB8A Missense_Mutation p.R135G 0.26 deleterious(0.01) benign(0.014) TCGA-D3-A51J-06 19 2216417 2216417 C T DOT1L Silent p.A687A 0.31 TCGA-D3-A51J-06 19 22941607 22941607 G A ZNF99 Silent p.P368P 0.33 TCGA-D3-A51J-06 19 30934658 30934658 C T ZNF536 Silent p.S63S 0.26 TCGA-D3-A51J-06 19 3747931 3747931 G A TJP3 Missense_Mutation p.G830D 0.26 tolerated(0.26) probably_damaging(0.976) TCGA-D3-A51J-06 19 3762665 3762665 G A MRPL54 5'UTR 0.29 TCGA-D3-A51J-06 19 38924435 38924435 C T RYR1 5'Flank 0.27 TCGA-D3-A51J-06 19 39915969 39915969 C T PLEKHG2 3'UTR 0.24 TCGA-D3-A51J-06 19 41854346 41854346 A G TGFB1 Missense_Mutation p.F124L 0.24 tolerated(0.64) benign(0.001) TCGA-D3-A51J-06 19 42314869 42314869 G A CEACAM3 Splice_Site p.X210_splice 0.15 TCGA-D3-A51J-06 19 43372160 43372160 G A PSG1 3'UTR 0.30 TCGA-D3-A51J-06 19 43679467 43679467 G A PSG5 Silent p.I288I 0.23 TCGA-D3-A51J-06 19 43698557 43698557 G T PSG4 Missense_Mutation p.A393D 0.29 tolerated(0.6) possibly_damaging(0.906) TCGA-D3-A51J-06 19 4429486 4429486 G C CHAF1A Missense_Mutation p.R552S 0.24 tolerated(0.18) benign(0.082) TCGA-D3-A51J-06 19 44681240 44681240 C T ZNF226 Missense_Mutation p.H609Y 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 19 46177967 46177967 C T GIPR Silent p.I172I 0.25 TCGA-D3-A51J-06 19 48519297 48519297 G A ELSPBP1 Splice_Site p.X119_splice 0.19 TCGA-D3-A51J-06 19 48845901 48845901 G A TMEM143 Silent p.V287V 0.33 TCGA-D3-A51J-06 19 49691914 49691914 C T TRPM4 Missense_Mutation p.S587F 0.19 deleterious(0.01) benign(0.163) TCGA-D3-A51J-06 19 50100154 50100154 C T PRR12 Silent p.L854L 0.30 TCGA-D3-A51J-06 19 50101038 50101038 C T PRR12 Missense_Mutation p.P1149L 0.18 possibly_damaging(0.851) TCGA-D3-A51J-06 19 50789856 50789856 G A MYH14 Missense_Mutation p.E1553K 0.20 tolerated(0.81) benign(0.352) TCGA-D3-A51J-06 19 50826917 50826917 G A KCNC3 Silent p.F431F 0.23 TCGA-D3-A51J-06 19 50838342 50838342 G A NAPSB RNA 0.30 TCGA-D3-A51J-06 19 51466647 51466647 G A KLK6 Missense_Mutation p.S119F 0.14 deleterious(0) probably_damaging(0.99) TCGA-D3-A51J-06 19 51518141 51518141 G A KLK10 Missense_Mutation p.P249L 0.16 deleterious(0) probably_damaging(0.996) TCGA-D3-A51J-06 19 52271993 52271993 C T FPR2 Missense_Mutation p.L28F 0.23 tolerated(0.8) benign(0.011) TCGA-D3-A51J-06 19 53059191 53059191 C T ZNF808 3'UTR 0.33 TCGA-D3-A51J-06 19 54313227 54313227 G A NLRP12 Silent p.F562F 0.21 TCGA-D3-A51J-06 19 54314407 54314407 G A NLRP12 Missense_Mutation p.P169L 0.29 tolerated(0.25) benign(0.098) TCGA-D3-A51J-06 19 54327417 54327417 G T NLRP12 Silent p.T4T 0.26 TCGA-D3-A51J-06 19 55331344 55331344 G A KIR3DL1 Missense_Mutation p.A178T 0.26 deleterious(0) probably_damaging(0.994) TCGA-D3-A51J-06 19 55420775 55420775 C T NCR1 Missense_Mutation p.P176L 0.25 deleterious(0) possibly_damaging(0.861) TCGA-D3-A51J-06 19 55452981 55452981 G A NLRP7 Silent p.P33P 0.24 TCGA-D3-A51J-06 19 56549442 56549442 C T NLRP5 Silent p.I889I 0.33 TCGA-D3-A51J-06 19 56701922 56701922 C T ZSCAN5B Silent p.G254G 0.30 TCGA-D3-A51J-06 19 57328303 57328303 T C PEG3 Missense_Mutation p.K503E 0.21 tolerated(0.05) benign(0.443) TCGA-D3-A51J-06 19 57640749 57640749 C T USP29 Missense_Mutation p.P236S 0.35 tolerated(0.06) benign(0.021) TCGA-D3-A51J-06 19 58189321 58189321 G A ZSCAN4 Missense_Mutation p.E146K 0.27 deleterious(0.03) possibly_damaging(0.643) TCGA-D3-A51J-06 19 58773673 58773673 G A ZNF544 Silent p.Q567Q 0.20 TCGA-D3-A51J-06 19 7607896 7607896 C T PNPLA6 Missense_Mutation p.P521S 0.27 tolerated(0.16) benign(0.049) TCGA-D3-A51J-06 19 7687455 7687455 G A XAB2 Silent p.S488S 0.27 TCGA-D3-A51J-06 19 8138131 8138131 G A FBN3 Missense_Mutation p.R2585C 0.27 tolerated(0.1) possibly_damaging(0.67) TCGA-D3-A51J-06 19 8176871 8176871 G A FBN3 Silent p.F1317F 0.25 TCGA-D3-A51J-06 19 9061180 9061180 G A MUC16 Missense_Mutation p.P8756S 0.24 unknown(0) TCGA-D3-A51J-06 19 9065866 9065866 C T MUC16 Missense_Mutation p.E7194K 0.28 unknown(0) TCGA-D3-A51J-06 19 9066532 9066532 G A MUC16 Missense_Mutation p.L6972F 0.34 unknown(0) TCGA-D3-A51J-06 19 9077304 9077304 G A MUC16 Missense_Mutation p.S3381L 0.24 unknown(0) TCGA-D3-A51J-06 1 10397142 10397142 C T KIF1B Missense_Mutation p.S1001L 0.24 tolerated(0.3) benign(0.077) TCGA-D3-A51J-06 1 109191331 109191331 G A HENMT1 Missense_Mutation p.L347F 0.24 tolerated(1) benign(0.002) TCGA-D3-A51J-06 1 110022195 110022195 G A SYPL2 3'UTR 0.22 TCGA-D3-A51J-06 1 111060811 111060811 C T KCNA10 Missense_Mutation p.R200H 0.36 deleterious(0.01) benign(0.293) TCGA-D3-A51J-06 1 12157239 12157239 C T TNFRSF8 Missense_Mutation p.A78V 0.17 tolerated(0.29) possibly_damaging(0.656) TCGA-D3-A51J-06 1 12907746 12907746 G A HNRNPCL1 Missense_Mutation p.P133S 0.24 tolerated(0.09) benign(0.311) TCGA-D3-A51J-06 1 12980272 12980272 C T PRAMEF7 3'UTR 0.37 TCGA-D3-A51J-06 1 13910419 13910419 C T PDPN Missense_Mutation p.P40L 0.26 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-D3-A51J-06 1 14106980 14106980 A T PRDM2 Missense_Mutation p.N897I 0.25 possibly_damaging(0.76) TCGA-D3-A51J-06 1 144892451 144892451 G A PDE4DIP Intron 0.12 TCGA-D3-A51J-06 1 151015541 151015541 C T BNIPL Silent p.F181F 0.21 TCGA-D3-A51J-06 1 151015542 151015542 C T BNIPL Nonsense_Mutation p.R182* 0.21 TCGA-D3-A51J-06 1 152128697 152128697 G A RPTN Missense_Mutation p.S293F 0.28 tolerated(0.09) benign(0.033) TCGA-D3-A51J-06 1 152187986 152187986 G A HRNR Missense_Mutation p.S2040F 0.04 unknown(0) TCGA-D3-A51J-06 1 152188090 152188090 T C HRNR Silent p.Q2005Q 0.04 TCGA-D3-A51J-06 1 152328761 152328761 G A FLG2 Nonsense_Mutation p.Q501* 0.22 TCGA-D3-A51J-06 1 152732733 152732733 C T KPRP Silent p.S223S 0.29 TCGA-D3-A51J-06 1 152975556 152975556 G A SPRR3 Silent p.Q20Q 0.27 TCGA-D3-A51J-06 1 153028990 153028990 C T SPRR2A 3'UTR 0.29 TCGA-D3-A51J-06 1 156555517 156555517 C T TTC24 Missense_Mutation p.P490L 0.32 deleterious_low_confidence(0.01) benign(0.001) TCGA-D3-A51J-06 1 158153921 158153921 C T CD1D Missense_Mutation p.S330F 0.26 deleterious(0.04) possibly_damaging(0.823) TCGA-D3-A51J-06 1 158262103 158262103 C T CD1C Silent p.P186P 0.20 TCGA-D3-A51J-06 1 161018303 161018303 C T ARHGAP30 Silent p.K836K 0.24 TCGA-D3-A51J-06 1 163117238 163117238 G A RGS5 Missense_Mutation p.S151F 0.23 deleterious(0) probably_damaging(0.989) TCGA-D3-A51J-06 1 171248010 171248010 G A FMO1 Silent p.K209K 0.26 TCGA-D3-A51J-06 1 19166132 19166132 G A TAS1R2 Silent p.F827F 0.21 TCGA-D3-A51J-06 1 200880600 200880600 G A C1orf106 Missense_Mutation p.G327S 0.24 tolerated(0.65) benign(0.002) TCGA-D3-A51J-06 1 200960266 200960266 C A KIF21B Silent p.L822L 0.22 TCGA-D3-A51J-06 1 207641906 207641906 C T CR2 Silent p.I160I 0.20 TCGA-D3-A51J-06 1 216019166 216019166 C T USH2A Missense_Mutation p.E3019K 0.23 benign(0.089) TCGA-D3-A51J-06 1 216380710 216380710 C T USH2A Nonsense_Mutation p.W1074* 0.31 TCGA-D3-A51J-06 1 216692521 216692521 G A ESRRG Missense_Mutation p.L381F 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A51J-06 1 217955521 217955521 C T SPATA17 Silent p.P243P 0.25 TCGA-D3-A51J-06 1 220340871 220340871 T A RAB3GAP2 Missense_Mutation p.M985L 0.25 tolerated(0.3) benign(0) TCGA-D3-A51J-06 1 223983955 223983955 C T TP53BP2 Silent p.R762R 0.22 TCGA-D3-A51J-06 1 22418101 22418101 C T CDC42 3'UTR 0.44 TCGA-D3-A51J-06 1 228466596 228466596 G A OBSCN Missense_Mutation p.E2785K 0.30 possibly_damaging(0.625) TCGA-D3-A51J-06 1 235950601 235950601 G A LYST Silent p.F1587F 0.22 TCGA-D3-A51J-06 1 235973803 235973803 G A LYST Silent p.I105I 0.26 TCGA-D3-A51J-06 1 24413250 24413250 G A MYOM3 Missense_Mutation p.A561V 0.20 deleterious(0.02) possibly_damaging(0.838) TCGA-D3-A51J-06 1 244756721 244756721 G A C1orf101 Silent p.S738S 0.29 TCGA-D3-A51J-06 1 248039287 248039287 G A TRIM58 Nonsense_Mutation p.W319* 0.23 TCGA-D3-A51J-06 1 248224085 248224085 C T OR2L3 Silent p.F34F 0.30 TCGA-D3-A51J-06 1 248263384 248263384 C T OR2L13 Missense_Mutation p.A236V 0.33 deleterious(0.03) probably_damaging(0.985) TCGA-D3-A51J-06 1 248458389 248458389 G A OR2T12 Silent p.F164F 0.28 TCGA-D3-A51J-06 1 248487739 248487739 G A OR2M7 Silent p.I44I 0.25 TCGA-D3-A51J-06 1 248652150 248652150 G A OR2T5 Silent p.L87L 0.25 TCGA-D3-A51J-06 1 31840318 31840318 C T FABP3 Silent p.G90G 0.19 TCGA-D3-A51J-06 1 36603488 36603488 G A TRAPPC3 Missense_Mutation p.P111L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 1 44451270 44451270 G A B4GALT2 Silent p.K344K 0.21 TCGA-D3-A51J-06 1 45271436 45271436 T C PLK3 3'UTR 0.44 TCGA-D3-A51J-06 1 50610820 50610820 G A ELAVL4 Silent p.G84G 0.33 TCGA-D3-A51J-06 1 62579784 62579784 G A INADL Silent p.Q1507Q 0.17 TCGA-D3-A51J-06 1 66075955 66075955 G A LEPR Silent p.E657E 0.12 TCGA-D3-A51J-06 1 74507520 74507520 C T LRRIQ3 Silent p.K365K 0.22 TCGA-D3-A51J-06 1 82409421 82409421 C T LPHN2 Missense_Mutation p.S389F 0.31 deleterious(0.01) possibly_damaging(0.785) TCGA-D3-A51J-06 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.42 deleterious_low_confidence(0) benign(0.022) TCGA-D3-A51J-06 20 31375151 31375151 G A DNMT3B Missense_Mutation p.S183N 0.44 deleterious(0.05) benign(0.132) TCGA-D3-A51J-06 20 31583499 31583499 C T SUN5 Missense_Mutation p.E154K 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A51J-06 20 31671390 31671390 A G BPIFB4 Silent p.A129A 0.15 TCGA-D3-A51J-06 20 33329915 33329915 G A NCOA6 Missense_Mutation p.A1382V 0.39 benign(0.08) TCGA-D3-A51J-06 20 44581017 44581017 G A ZNF335 Silent p.S986S 0.23 TCGA-D3-A51J-06 20 49575519 49575519 C T MOCS3 Missense_Mutation p.S47L 0.42 tolerated(0.13) benign(0.004) TCGA-D3-A51J-06 20 50241845 50241845 C T ATP9A Silent p.T634T 0.15 TCGA-D3-A51J-06 20 52774001 52774001 G A CYP24A1 Missense_Mutation p.P454S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 20 54824280 54824280 C T MC3R Silent p.S127S 0.41 TCGA-D3-A51J-06 20 57767608 57767608 G A ZNF831 Missense_Mutation p.G512S 0.37 tolerated(0.13) benign(0.352) TCGA-D3-A51J-06 20 58495427 58495427 C T SYCP2 Missense_Mutation p.G95E 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 20 58495428 58495428 C A SYCP2 Nonsense_Mutation p.G95* 0.27 TCGA-D3-A51J-06 20 60503331 60503331 G A CDH4 Missense_Mutation p.E619K 0.47 tolerated(0.06) benign(0.037) TCGA-D3-A51J-06 20 61488953 61488953 C G TCFL5 Silent p.R344R 0.10 TCGA-D3-A51J-06 20 61488954 61488954 C T TCFL5 Missense_Mutation p.R344Q 0.10 tolerated(0.12) possibly_damaging(0.623) TCGA-D3-A51J-06 20 6759218 6759218 G A BMP2 Missense_Mutation p.G225R 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 20 9546931 9546931 G A PAK7 Missense_Mutation p.S364L 0.39 tolerated(0.37) benign(0) TCGA-D3-A51J-06 21 35183372 35183372 C T ITSN1 Missense_Mutation p.P805S 0.28 tolerated(0.14) benign(0.028) TCGA-D3-A51J-06 21 41452084 41452084 C T DSCAM Missense_Mutation p.G1472E 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A51J-06 22 20109898 20109898 C T RANBP1 Silent p.L88L 0.13 TCGA-D3-A51J-06 22 21083628 21083628 G A PI4KA Missense_Mutation p.P1552L 0.18 deleterious(0) probably_damaging(0.947) TCGA-D3-A51J-06 22 24583661 24583661 A C SUSD2 Missense_Mutation p.N672H 0.37 tolerated(0.07) benign(0.261) TCGA-D3-A51J-06 22 25119215 25119215 G A PIWIL3 Silent p.L756L 0.32 TCGA-D3-A51J-06 22 26688787 26688787 G A SEZ6L Silent p.P170P 0.30 TCGA-D3-A51J-06 22 29885168 29885168 G A NEFH Silent p.E513E 0.28 TCGA-D3-A51J-06 22 32211145 32211145 C T DEPDC5 Missense_Mutation p.P538L 0.14 tolerated(0.21) benign(0.002) TCGA-D3-A51J-06 22 38028015 38028015 C T GGA1 Missense_Mutation p.P514L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 22 38379617 38379617 G A SOX10 Nonsense_Mutation p.Q59* 0.23 TCGA-D3-A51J-06 22 40057169 40057169 C T CACNA1I Missense_Mutation p.P919S 0.22 tolerated(0.19) possibly_damaging(0.641) TCGA-D3-A51J-06 22 41195057 41195057 G T SLC25A17 Missense_Mutation p.P29T 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 22 41864614 41864614 G A PHF5A Missense_Mutation p.A15V 0.20 tolerated(0.08) benign(0.142) TCGA-D3-A51J-06 22 46615714 46615714 C T PPARA Missense_Mutation p.R172C 0.31 deleterious(0.02) probably_damaging(0.96) TCGA-D3-A51J-06 22 50488560 50488560 C T TTLL8 Silent p.E92E 0.18 TCGA-D3-A51J-06 2 103001419 103001419 C T IL18R1 Missense_Mutation p.S257L 0.16 tolerated(0.34) benign(0.004) TCGA-D3-A51J-06 2 105473071 105473071 T G POU3F3 Missense_Mutation p.L368R 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 2 108608587 108608587 C T SLC5A7 Silent p.I68I 0.30 TCGA-D3-A51J-06 2 109087819 109087819 A G GCC2 Silent p.E678E 0.26 TCGA-D3-A51J-06 2 110310775 110310775 G A SEPT10 Silent p.A350A 0.26 TCGA-D3-A51J-06 2 128342434 128342434 G A MYO7B Missense_Mutation p.D546N 0.21 tolerated(0.21) probably_damaging(1) TCGA-D3-A51J-06 2 141232866 141232866 C T LRP1B Missense_Mutation p.G3156S 0.18 possibly_damaging(0.855) TCGA-D3-A51J-06 2 141762925 141762925 C T LRP1B Missense_Mutation p.E828K 0.15 benign(0.292) TCGA-D3-A51J-06 2 142567897 142567897 A C LRP1B Missense_Mutation p.C52W 0.26 possibly_damaging(0.892) TCGA-D3-A51J-06 2 149227385 149227385 C T MBD5 Missense_Mutation p.P625S 0.21 tolerated(0.11) possibly_damaging(0.803) TCGA-D3-A51J-06 2 152584256 152584256 G A NEB Silent p.F81F 0.14 TCGA-D3-A51J-06 2 158300411 158300411 C T CYTIP Missense_Mutation p.R41K 0.28 tolerated(0.17) probably_damaging(0.985) TCGA-D3-A51J-06 2 159165971 159165971 C T CCDC148 Missense_Mutation p.E362K 0.27 tolerated(0.06) possibly_damaging(0.801) TCGA-D3-A51J-06 2 160289573 160289573 G A BAZ2B Missense_Mutation p.S532F 0.22 possibly_damaging(0.485) TCGA-D3-A51J-06 2 170003411 170003411 C T LRP2 Missense_Mutation p.G4217R 0.29 probably_damaging(1) TCGA-D3-A51J-06 2 179436331 179436331 T A TTN Missense_Mutation p.N24843I 0.19 TCGA-D3-A51J-06 2 179585787 179585787 C T TTN Nonsense_Mutation p.W7653* 0.40 TCGA-D3-A51J-06 2 179596173 179596173 C T TTN Missense_Mutation p.D5774N 0.26 TCGA-D3-A51J-06 2 179611861 179611861 C T TTN Intron 0.28 TCGA-D3-A51J-06 2 179634957 179634957 G A TTN Missense_Mutation p.P2824L 0.28 TCGA-D3-A51J-06 2 179644851 179644851 A G TTN Missense_Mutation p.V1202A 0.18 TCGA-D3-A51J-06 2 179654825 179654825 C T TTN Silent p.R606R 0.33 TCGA-D3-A51J-06 2 201437408 201437408 C T SGOL2 Missense_Mutation p.S780F 0.22 tolerated(0.26) benign(0.001) TCGA-D3-A51J-06 2 21230708 21230708 C T APOB Missense_Mutation p.G3011E 0.30 benign(0.002) TCGA-D3-A51J-06 2 213872103 213872103 C T IKZF2 Missense_Mutation p.G521E 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 2 220334030 220334030 C T SPEG Missense_Mutation p.P1215L 0.47 probably_damaging(1) TCGA-D3-A51J-06 2 220466086 220466086 C T STK11IP Missense_Mutation p.S75F 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 2 223799336 223799336 G A ACSL3 Missense_Mutation p.E646K 0.44 tolerated(0.05) possibly_damaging(0.67) TCGA-D3-A51J-06 2 227920819 227920819 C T COL4A4 Missense_Mutation p.G853E 0.25 unknown(0) TCGA-D3-A51J-06 2 228115911 228115911 G A COL4A3 Missense_Mutation p.G201E 0.30 probably_damaging(1) TCGA-D3-A51J-06 2 234621899 234621899 G A UGT1A5 Missense_Mutation p.E88K 0.22 tolerated(0.11) benign(0.103) TCGA-D3-A51J-06 2 241682374 241682374 G A KIF1A Silent p.F1204F 0.16 TCGA-D3-A51J-06 2 25457289 25457289 C T DNMT3A Silent p.R866R 0.32 TCGA-D3-A51J-06 2 25457290 25457290 C T DNMT3A Splice_Site p.X866_splice 0.31 TCGA-D3-A51J-06 2 26177195 26177195 G A KIF3C Silent p.I610I 0.38 TCGA-D3-A51J-06 2 29221041 29221041 G A FAM179A Missense_Mutation p.G21R 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A51J-06 2 31605980 31605980 C T XDH Missense_Mutation p.E309K 0.24 tolerated(0.97) benign(0.271) TCGA-D3-A51J-06 2 31620565 31620565 G A XDH Missense_Mutation p.P155L 0.31 deleterious(0) probably_damaging(0.956) TCGA-D3-A51J-06 2 38978507 38978507 G A SRSF7 5'UTR 0.33 TCGA-D3-A51J-06 2 44600005 44600005 C G CAMKMT Missense_Mutation p.P97A 0.33 deleterious(0.01) benign(0.354) TCGA-D3-A51J-06 2 61238932 61238932 C A PUS10 Missense_Mutation p.D32Y 0.33 deleterious(0.02) possibly_damaging(0.627) TCGA-D3-A51J-06 2 61238933 61238933 C T PUS10 Silent p.V31V 0.33 TCGA-D3-A51J-06 2 61450224 61450224 A C USP34 Missense_Mutation p.C2574G 0.28 deleterious(0) possibly_damaging(0.87) TCGA-D3-A51J-06 2 74042636 74042636 G A C2orf78 Missense_Mutation p.G429E 0.25 tolerated(0.3) benign(0.258) TCGA-D3-A51J-06 2 80782832 80782832 G A CTNNA2 Missense_Mutation p.E519K 0.23 deleterious(0.02) benign(0.139) TCGA-D3-A51J-06 2 88857312 88857312 G A EIF2AK3 Missense_Mutation p.S1098L 0.19 deleterious(0) possibly_damaging(0.639) TCGA-D3-A51J-06 2 89384844 89384844 C T IGKV3-15 Silent p.Q58Q 0.28 TCGA-D3-A51J-06 2 90458668 90458668 C T CH17-132F21.1 Missense_Mutation p.P115L 0.04 TCGA-D3-A51J-06 2 97216838 97216838 G A ARID5A Missense_Mutation p.M191I 0.34 tolerated(0.62) benign(0.002) TCGA-D3-A51J-06 2 99863277 99863277 G A LYG2 Missense_Mutation p.S17F 0.24 deleterious(0) possibly_damaging(0.711) TCGA-D3-A51J-06 3 101056353 101056353 G A SENP7 Missense_Mutation p.S827L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 3 111769591 111769591 C T TMPRSS7 Silent p.S262S 0.22 TCGA-D3-A51J-06 3 114070173 114070173 G A ZBTB20 Missense_Mutation p.S251F 0.27 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-D3-A51J-06 3 121415274 121415274 G A GOLGB1 Missense_Mutation p.H1366Y 0.17 benign(0.014) TCGA-D3-A51J-06 3 121416270 121416270 G A GOLGB1 Missense_Mutation p.L1034F 0.28 benign(0.012) TCGA-D3-A51J-06 3 122345835 122345835 C T PARP15 Missense_Mutation p.L465F 0.15 tolerated(0.1) benign(0.012) TCGA-D3-A51J-06 3 124578288 124578288 G A ITGB5 Silent p.F54F 0.12 TCGA-D3-A51J-06 3 126138823 126138823 G A CCDC37 Missense_Mutation p.G305E 0.27 deleterious(0.05) benign(0.091) TCGA-D3-A51J-06 3 137843130 137843130 C T A4GNT Silent p.G333G 0.31 TCGA-D3-A51J-06 3 138739232 138739232 G A PRR23B Missense_Mutation p.S91F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 3 14526459 14526459 G A SLC6A6 Missense_Mutation p.V603I 0.30 tolerated(0.45) benign(0) TCGA-D3-A51J-06 3 158787194 158787194 C T IQCJ 5'UTR 0.35 TCGA-D3-A51J-06 3 164907635 164907635 G A SLITRK3 Silent p.S328S 0.28 TCGA-D3-A51J-06 3 164908542 164908542 C T SLITRK3 Missense_Mutation p.G26E 0.22 tolerated(0.08) benign(0.157) TCGA-D3-A51J-06 3 167023697 167023697 C T ZBBX Missense_Mutation p.D487N 0.37 tolerated(0.3) possibly_damaging(0.613) TCGA-D3-A51J-06 3 169540093 169540093 C T LRRIQ4 Silent p.T128T 0.22 TCGA-D3-A51J-06 3 178984526 178984526 C T KCNMB3 5'UTR 0.27 TCGA-D3-A51J-06 3 184107175 184107175 G A CHRD Missense_Mutation p.D945N 0.23 tolerated_low_confidence(0.48) benign(0.03) TCGA-D3-A51J-06 3 185975697 185975697 G A DGKG Missense_Mutation p.R486C 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 3 28557087 28557087 T C ZCWPW2 Silent p.D253D 0.18 TCGA-D3-A51J-06 3 35763277 35763277 G A ARPP21 Silent p.R358R 0.38 TCGA-D3-A51J-06 3 3887745 3887745 G A LRRN1 Missense_Mutation p.D474N 0.20 tolerated(0.38) benign(0.005) TCGA-D3-A51J-06 3 3887766 3887766 G A LRRN1 Missense_Mutation p.E481K 0.23 deleterious(0.01) possibly_damaging(0.658) TCGA-D3-A51J-06 3 38888361 38888361 C T SCN11A Missense_Mutation p.E1734K 0.26 deleterious(0) possibly_damaging(0.497) TCGA-D3-A51J-06 3 42251637 42251637 C T TRAK1 Intron 0.23 TCGA-D3-A51J-06 3 43759319 43759319 C T ABHD5 Silent p.S310S 0.29 TCGA-D3-A51J-06 3 44437968 44437968 G A TCAIM Missense_Mutation p.E258K 0.40 tolerated(0.05) benign(0.283) TCGA-D3-A51J-06 3 48605968 48605968 C T COL7A1 Splice_Site p.X2587_splice 0.24 TCGA-D3-A51J-06 3 51746690 51746690 G A GRM2 Missense_Mutation p.E218K 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 3 52256104 52256104 G A TLR9 Missense_Mutation p.S897F 0.21 deleterious(0.02) benign(0.162) TCGA-D3-A51J-06 3 52526456 52526456 G A NISCH Silent p.E1491E 0.25 TCGA-D3-A51J-06 3 52812490 52812490 C T ITIH1 Silent p.I91I 0.10 TCGA-D3-A51J-06 3 67053691 67053691 G A KBTBD8 Silent p.S100S 0.33 TCGA-D3-A51J-06 3 77657056 77657056 C T ROBO2 Missense_Mutation p.L1098F 0.16 tolerated(0.32) possibly_damaging(0.587) TCGA-D3-A51J-06 3 97868537 97868537 C T OR5H14 Missense_Mutation p.S103L 0.21 tolerated(0.12) benign(0.014) TCGA-D3-A51J-06 4 100349094 100349094 C T ADH7 Missense_Mutation p.G154S 0.18 deleterious(0) possibly_damaging(0.651) TCGA-D3-A51J-06 4 119952953 119952953 C T SYNPO2 Missense_Mutation p.P1008L 0.17 tolerated(0.21) benign(0.003) TCGA-D3-A51J-06 4 126408631 126408631 A C FAT4 Silent p.T4316T 0.38 TCGA-D3-A51J-06 4 126412630 126412630 G A FAT4 Missense_Mutation p.G4885R 0.15 probably_damaging(1) TCGA-D3-A51J-06 4 154542000 154542000 G A KIAA0922 Silent p.K1220K 0.19 TCGA-D3-A51J-06 4 158091912 158091912 C T GLRB 3'UTR 0.29 TCGA-D3-A51J-06 4 162402318 162402318 C T FSTL5 Missense_Mutation p.E488K 0.26 deleterious(0.02) probably_damaging(0.952) TCGA-D3-A51J-06 4 164246831 164246831 C T NPY1R Missense_Mutation p.R260K 0.43 tolerated(0.05) probably_damaging(0.951) TCGA-D3-A51J-06 4 175897049 175897049 G A ADAM29 Missense_Mutation p.G125R 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 4 187158058 187158058 C T KLKB1 Missense_Mutation p.S151L 0.27 deleterious(0) benign(0.167) TCGA-D3-A51J-06 4 188924630 188924630 G A ZFP42 Silent p.G223G 0.22 TCGA-D3-A51J-06 4 189026074 189026074 C T TRIML2 Missense_Mutation p.E18K 0.29 deleterious(0.02) benign(0.247) TCGA-D3-A51J-06 4 20618577 20618577 G A SLIT2 Missense_Mutation p.G1298R 0.20 tolerated(0.51) probably_damaging(0.932) TCGA-D3-A51J-06 4 248529 248529 G A ZNF876P RNA 0.18 TCGA-D3-A51J-06 4 25379078 25379078 C T ANAPC4 Missense_Mutation p.S10F 0.32 deleterious(0) possibly_damaging(0.761) TCGA-D3-A51J-06 4 25379079 25379079 C T ANAPC4 Silent p.S10S 0.31 TCGA-D3-A51J-06 4 37591724 37591724 C T C4orf19 Missense_Mutation p.P16L 0.26 deleterious(0) probably_damaging(0.986) TCGA-D3-A51J-06 4 37903743 37903743 G A TBC1D1 Silent p.R9R 0.22 TCGA-D3-A51J-06 4 41621205 41621205 G A LIMCH1 Missense_Mutation p.G228E 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 4 42964963 42964963 C T GRXCR1 Missense_Mutation p.R147C 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A51J-06 4 57797030 57797030 C T REST Missense_Mutation p.P669L 0.23 tolerated_low_confidence(0.06) benign(0.016) TCGA-D3-A51J-06 4 78082067 78082067 C T CCNG2 Missense_Mutation p.T157I 0.11 deleterious(0.01) possibly_damaging(0.685) TCGA-D3-A51J-06 4 81207606 81207606 G A FGF5 Missense_Mutation p.G196E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 4 8229024 8229024 G A SH3TC1 Missense_Mutation p.D535N 0.29 deleterious(0.02) probably_damaging(1) TCGA-D3-A51J-06 4 887207 887207 G A GAK Silent p.I316I 0.31 TCGA-D3-A51J-06 4 94377042 94377042 C T GRID2 Missense_Mutation p.P592L 0.23 deleterious(0) possibly_damaging(0.73) TCGA-D3-A51J-06 4 96761472 96761472 G T PDHA2 Silent p.A57A 0.33 TCGA-D3-A51J-06 5 101593780 101593780 C T SLCO4C1 Silent p.K380K 0.17 TCGA-D3-A51J-06 5 11082809 11082809 G A CTNND2 Silent p.I929I 0.21 TCGA-D3-A51J-06 5 120021865 120021865 C T PRR16 Missense_Mutation p.P103S 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A51J-06 5 120021866 120021866 C T PRR16 Missense_Mutation p.P103L 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A51J-06 5 1323954 1323954 G A CLPTM1L Missense_Mutation p.P410S 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 5 132648412 132648412 G A FSTL4 Missense_Mutation p.L221F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 5 135207346 135207346 C T SLC25A48 Intron 0.19 TCGA-D3-A51J-06 5 140181759 140181759 G A PCDHA3 Missense_Mutation p.G326E 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A51J-06 5 140529808 140529808 G A PCDHB6 5'Flank 0.34 TCGA-D3-A51J-06 5 140563296 140563296 G A PCDHB16 Missense_Mutation p.D388N 0.33 tolerated_low_confidence(0.4) benign(0.118) TCGA-D3-A51J-06 5 140745583 140745583 C T PCDHGA5 Silent p.I562I 0.27 TCGA-D3-A51J-06 5 140797872 140797872 G A PCDHGB7 Missense_Mutation p.G149E 0.23 deleterious(0.01) probably_damaging(1) TCGA-D3-A51J-06 5 14369482 14369482 G A TRIO Splice_Site p.X1023_splice 0.22 TCGA-D3-A51J-06 5 145843314 145843314 C T TCERG1 Missense_Mutation p.P365S 0.25 deleterious(0.04) unknown(0) TCGA-D3-A51J-06 5 146997512 146997512 G A JAKMIP2 Missense_Mutation p.L770F 0.28 deleterious(0) possibly_damaging(0.731) TCGA-D3-A51J-06 5 147790229 147790229 A G FBXO38 Missense_Mutation p.T332A 0.27 deleterious(0) probably_damaging(0.979) TCGA-D3-A51J-06 5 149562428 149562428 C T CDX1 Silent p.I181I 0.20 TCGA-D3-A51J-06 5 154092473 154092473 C T LARP1 5'UTR 0.24 TCGA-D3-A51J-06 5 160886667 160886667 G A GABRB2 Missense_Mutation p.R141C 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 5 170235712 170235712 C T GABRP Missense_Mutation p.S263L 0.29 deleterious(0) probably_damaging(0.998) TCGA-D3-A51J-06 5 176860632 176860632 G A GRK6 Silent p.A231A 0.27 TCGA-D3-A51J-06 5 178139233 178139233 G A ZNF354A Missense_Mutation p.P549L 0.21 deleterious(0.03) probably_damaging(1) TCGA-D3-A51J-06 5 180030280 180030280 C T FLT4 Missense_Mutation p.S1335N 0.30 tolerated_low_confidence(0.54) benign(0.008) TCGA-D3-A51J-06 5 19473421 19473421 C T CDH18 Missense_Mutation p.D763N 0.24 tolerated(0.53) possibly_damaging(0.862) TCGA-D3-A51J-06 5 35065157 35065157 C T PRLR 3'UTR 0.39 TCGA-D3-A51J-06 5 35709098 35709098 C T SPEF2 Missense_Mutation p.S905F 0.31 deleterious(0.03) benign(0.177) TCGA-D3-A51J-06 5 45645491 45645491 C T HCN1 Missense_Mutation p.M215I 0.27 tolerated(0.36) probably_damaging(0.968) TCGA-D3-A51J-06 5 5191844 5191844 G A ADAMTS16 Silent p.T418T 0.28 TCGA-D3-A51J-06 5 52194178 52194178 C G ITGA1 Missense_Mutation p.S425C 0.24 tolerated(0.07) possibly_damaging(0.469) TCGA-D3-A51J-06 5 60053375 60053375 C T ELOVL7 Silent p.K199K 0.15 TCGA-D3-A51J-06 5 637629 637629 C T CEP72 Intron 0.16 TCGA-D3-A51J-06 5 79034423 79034423 G A CMYA5 Missense_Mutation p.E3279K 0.12 benign(0.204) TCGA-D3-A51J-06 5 96232550 96232550 T A ERAP2 Missense_Mutation p.W496R 0.24 deleterious(0) probably_damaging(0.994) TCGA-D3-A51J-06 6 110777583 110777583 C T SLC22A16 Intron 0.39 TCGA-D3-A51J-06 6 121625554 121625554 A G TBC1D32 Missense_Mutation p.Y298H 0.62 deleterious(0) probably_damaging(0.989) TCGA-D3-A51J-06 6 133827325 133827325 G A EYA4 Missense_Mutation p.D425N 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A51J-06 6 136934353 136934353 T G MAP3K5 Missense_Mutation p.K774Q 0.36 tolerated(0.12) probably_damaging(0.989) TCGA-D3-A51J-06 6 137330502 137330502 G A IL20RA Silent p.S177S 0.33 TCGA-D3-A51J-06 6 138655812 138655812 C T KIAA1244 Silent p.F1943F 0.20 TCGA-D3-A51J-06 6 157256616 157256616 G T ARID1B Missense_Mutation p.G648V 0.06 probably_damaging(1) TCGA-D3-A51J-06 6 158495667 158495667 G A SYNJ2 Missense_Mutation p.R730H 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 6 160555050 160555050 C T SLC22A1 Silent p.F244F 0.30 TCGA-D3-A51J-06 6 160977073 160977073 C T LPA Missense_Mutation p.E1653K 0.27 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A51J-06 6 161016426 161016426 C T LPA Silent p.T1143T 0.28 TCGA-D3-A51J-06 6 17601203 17601203 G A FAM8A1 Missense_Mutation p.R188Q 0.20 tolerated(0.51) benign(0.001) TCGA-D3-A51J-06 6 27216666 27216666 G A PRSS16 Missense_Mutation p.G93E 0.21 deleterious(0) probably_damaging(0.952) TCGA-D3-A51J-06 6 27925445 27925445 C T OR2B6 Nonsense_Mutation p.Q143* 0.19 TCGA-D3-A51J-06 6 28501836 28501836 C T GPX5 Silent p.F186F 0.17 TCGA-D3-A51J-06 6 28539994 28539994 C T SCAND3 Silent p.Q1224Q 0.20 TCGA-D3-A51J-06 6 30919743 30919743 G A DPCR1 Missense_Mutation p.E1168K 0.34 tolerated(0.18) possibly_damaging(0.882) TCGA-D3-A51J-06 6 31600505 31600505 G A PRRC2A Missense_Mutation p.G1352E 0.23 unknown(0) TCGA-D3-A51J-06 6 31743954 31743954 G A VWA7 Silent p.F100F 0.18 TCGA-D3-A51J-06 6 37414177 37414177 C T CMTR1 Silent p.L132L 0.19 TCGA-D3-A51J-06 6 37414178 37414178 C T CMTR1 Missense_Mutation p.R133W 0.19 deleterious(0) benign(0.167) TCGA-D3-A51J-06 6 38951992 38951992 G A DNAH8 Nonsense_Mutation p.W4104* 0.17 TCGA-D3-A51J-06 6 43307964 43307964 G A ZNF318 Nonsense_Mutation p.Q1258* 0.15 TCGA-D3-A51J-06 6 5004149 5004149 G A RPP40 Missense_Mutation p.R30W 0.35 deleterious(0.01) possibly_damaging(0.724) TCGA-D3-A51J-06 6 52847504 52847504 C T GSTA4 Splice_Site p.X139_splice 0.16 TCGA-D3-A51J-06 6 53519497 53519497 G A KLHL31 Nonsense_Mutation p.Q192* 0.24 TCGA-D3-A51J-06 6 53519498 53519498 G A KLHL31 Silent p.A191A 0.24 TCGA-D3-A51J-06 6 54804872 54804872 G A FAM83B Missense_Mutation p.G368D 0.24 tolerated(0.11) benign(0.004) TCGA-D3-A51J-06 6 55739504 55739504 C T BMP5 Missense_Mutation p.E54K 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A51J-06 6 56044486 56044486 G A COL21A1 Missense_Mutation p.A177V 0.13 tolerated(0.06) benign(0.049) TCGA-D3-A51J-06 6 56044747 56044747 G A COL21A1 Missense_Mutation p.P90L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 6 89891673 89891673 C T GABRR1 Nonsense_Mutation p.W300* 0.43 TCGA-D3-A51J-06 6 89891674 89891674 C T GABRR1 Nonsense_Mutation p.W300* 0.43 TCGA-D3-A51J-06 6 90661123 90661123 G A BACH2 Silent p.Y234Y 0.31 TCGA-D3-A51J-06 6 97246961 97246961 C T GPR63 Missense_Mutation p.G216E 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A51J-06 7 100682687 100682687 G T MUC17 Missense_Mutation p.V2664L 0.17 unknown(0) TCGA-D3-A51J-06 7 100686075 100686075 C T MUC17 Missense_Mutation p.S3793L 0.20 benign(0.307) TCGA-D3-A51J-06 7 103143594 103143594 C T RELN Nonsense_Mutation p.W2786* 0.36 TCGA-D3-A51J-06 7 107706266 107706266 G A LAMB4 Missense_Mutation p.S926F 0.33 deleterious(0.03) probably_damaging(1) TCGA-D3-A51J-06 7 137773440 137773440 G A AKR1D1 Missense_Mutation p.E63K 0.15 deleterious(0) probably_damaging(0.994) TCGA-D3-A51J-06 7 138522638 138522638 G A KIAA1549 3'UTR 0.31 TCGA-D3-A51J-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-D3-A51J-06 7 141758051 141758051 C T MGAM Silent p.L1248L 0.45 TCGA-D3-A51J-06 7 142099620 142099620 C T TRBV7-8 Missense_Mutation p.G61E 0.10 tolerated(0.12) benign(0.361) TCGA-D3-A51J-06 7 142180726 142180726 C T TRBV6-5 Missense_Mutation p.D45N 0.17 tolerated(0.48) possibly_damaging(0.651) TCGA-D3-A51J-06 7 142197675 142197675 T G TRBV11-2 RNA 0.14 TCGA-D3-A51J-06 7 142334609 142334609 G A TRBV20-1 Splice_Site p.X11_splice 0.30 TCGA-D3-A51J-06 7 142364455 142364455 G A TRBV24-1 Silent p.R30R 0.27 TCGA-D3-A51J-06 7 143270280 143270280 C T CTAGE15 Missense_Mutation p.S457F 0.13 deleterious(0) possibly_damaging(0.681) TCGA-D3-A51J-06 7 150174550 150174550 G A GIMAP8 Silent p.A560A 0.56 TCGA-D3-A51J-06 7 21695538 21695538 G A DNAH11 Missense_Mutation p.G1683E 0.58 probably_damaging(0.985) TCGA-D3-A51J-06 7 21912939 21912939 T C DNAH11 Silent p.L4012L 0.40 TCGA-D3-A51J-06 7 2473417 2473417 C T CHST12 Silent p.F381F 0.40 TCGA-D3-A51J-06 7 24747815 24747815 C T DFNA5 Silent p.Q307Q 0.30 TCGA-D3-A51J-06 7 31015394 31015394 G A GHRHR Silent p.V295V 0.34 TCGA-D3-A51J-06 7 34125521 34125521 A C BMPER Missense_Mutation p.D521A 0.40 tolerated(0.16) benign(0.018) TCGA-D3-A51J-06 7 34889311 34889311 C T NPSR1 Intron 0.16 TCGA-D3-A51J-06 7 47694918 47694918 C T C7orf65 Silent p.L14L 0.33 TCGA-D3-A51J-06 7 73279581 73279581 C T WBSCR28 Silent p.L111L 0.18 TCGA-D3-A51J-06 7 7559737 7559737 C T COL28A1 Missense_Mutation p.G257R 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 7 92821673 92821673 G A HEPACAM2 Missense_Mutation p.P427S 0.20 tolerated(1) benign(0.009) TCGA-D3-A51J-06 7 97870247 97870247 G A TECPR1 Silent p.I283I 0.38 TCGA-D3-A51J-06 7 99445173 99445173 G A CYP3A43 Silent p.K127K 0.18 TCGA-D3-A51J-06 7 99798576 99798576 T C STAG3 Missense_Mutation p.L682P 0.43 deleterious(0) probably_damaging(0.979) TCGA-D3-A51J-06 8 104922683 104922683 C T RIMS2 Intron 0.54 TCGA-D3-A51J-06 8 104922684 104922684 C T RIMS2 Intron 0.53 TCGA-D3-A51J-06 8 105367188 105367188 C T DCSTAMP Silent p.F371F 0.43 TCGA-D3-A51J-06 8 105405096 105405096 G A DPYS Silent p.F453F 0.41 TCGA-D3-A51J-06 8 106573677 106573677 C T ZFPM2 Missense_Mutation p.P130S 0.43 tolerated(0.71) benign(0.001) TCGA-D3-A51J-06 8 106810978 106810978 G A ZFPM2 Missense_Mutation p.G256S 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A51J-06 8 108296931 108296931 C T ANGPT1 Missense_Mutation p.G395E 0.10 tolerated(0.05) probably_damaging(0.92) TCGA-D3-A51J-06 8 110099745 110099745 G A TRHR Missense_Mutation p.E2K 0.20 deleterious(0) benign(0.223) TCGA-D3-A51J-06 8 110457371 110457371 C T PKHD1L1 Missense_Mutation p.S1758F 0.47 tolerated(0.08) benign(0.02) TCGA-D3-A51J-06 8 110457856 110457856 G A PKHD1L1 Missense_Mutation p.G1920R 0.42 tolerated(0.18) benign(0.014) TCGA-D3-A51J-06 8 113662563 113662563 G A CSMD3 Missense_Mutation p.T1007M 0.14 deleterious(0) possibly_damaging(0.792) TCGA-D3-A51J-06 8 124219678 124219678 C T FAM83A Missense_Mutation p.S352F 0.12 tolerated(0.17) benign(0.413) TCGA-D3-A51J-06 8 124250037 124250037 C A C8orf76 Splice_Site p.X119_splice 0.15 TCGA-D3-A51J-06 8 125078772 125078772 C T FER1L6 Missense_Mutation p.S1220F 0.40 deleterious(0) probably_damaging(0.993) TCGA-D3-A51J-06 8 131916173 131916173 A G ADCY8 Silent p.L586L 0.44 TCGA-D3-A51J-06 8 139791802 139791802 C T COL22A1 Missense_Mutation p.E552K 0.24 unknown(0) TCGA-D3-A51J-06 8 143784501 143784501 C T LY6K Intron 0.26 TCGA-D3-A51J-06 8 145947433 145947433 G A ZNF251 Missense_Mutation p.P538S 0.37 tolerated(0.08) possibly_damaging(0.641) TCGA-D3-A51J-06 8 39502899 39502899 G A ADAM18 Missense_Mutation p.A318T 0.39 tolerated(0.34) benign(0.217) TCGA-D3-A51J-06 8 41546095 41546095 C T ANK1 Missense_Mutation p.E1414K 0.59 deleterious(0.05) benign(0.146) TCGA-D3-A51J-06 8 52370139 52370139 C T PXDNL Missense_Mutation p.G301S 0.48 deleterious(0) probably_damaging(0.986) TCGA-D3-A51J-06 8 56436147 56436147 G A XKR4 Silent p.G438G 0.37 TCGA-D3-A51J-06 8 57026115 57026115 C T MOS Missense_Mutation p.G143S 0.38 deleterious(0.03) probably_damaging(1) TCGA-D3-A51J-06 8 57214037 57214037 C T SDR16C5 3'UTR 0.21 TCGA-D3-A51J-06 8 66516601 66516601 C T ARMC1 3'UTR 0.36 TCGA-D3-A51J-06 8 68950487 68950487 C T PREX2 Missense_Mutation p.L267F 0.45 deleterious(0) probably_damaging(0.942) TCGA-D3-A51J-06 8 75898209 75898209 T C CRISPLD1 5'UTR 0.14 TCGA-D3-A51J-06 8 92407480 92407480 G A SLC26A7 3'Flank 0.22 TCGA-D3-A51J-06 9 100919753 100919753 G A CORO2A Missense_Mutation p.P64S 0.40 tolerated(0.08) possibly_damaging(0.865) TCGA-D3-A51J-06 9 111617140 111617140 C T ACTL7B Silent p.R357R 0.45 TCGA-D3-A51J-06 9 111714530 111714530 C T CTNNAL1 Silent p.R598R 0.18 TCGA-D3-A51J-06 9 121929509 121929509 C G BRINP1 Silent p.G713G 0.42 TCGA-D3-A51J-06 9 128111773 128111773 C T GAPVD1 Missense_Mutation p.P1119S 0.23 tolerated(0.1) benign(0.062) TCGA-D3-A51J-06 9 128725298 128725298 C T PBX3 Missense_Mutation p.T377I 0.20 deleterious(0.02) benign(0.439) TCGA-D3-A51J-06 9 131811727 131811727 A C FAM73B Missense_Mutation p.E163A 0.43 tolerated(0.1) benign(0.006) TCGA-D3-A51J-06 9 138650285 138650285 G A KCNT1 Missense_Mutation p.R262Q 0.37 deleterious(0.02) possibly_damaging(0.741) TCGA-D3-A51J-06 9 17795735 17795735 C T SH3GL2 Silent p.P351P 0.41 TCGA-D3-A51J-06 9 18777235 18777235 C T ADAMTSL1 Missense_Mutation p.S1003F 0.48 tolerated(0.77) benign(0) TCGA-D3-A51J-06 9 21971209 21971209 T A CDKN2A Splice_Site p.X51_splice 0.57 TCGA-D3-A51J-06 9 37888004 37888004 G A SLC25A51 Missense_Mutation p.R182W 0.40 deleterious(0) probably_damaging(0.995) TCGA-D3-A51J-06 9 37888005 37888005 G A SLC25A51 Silent p.F181F 0.38 TCGA-D3-A51J-06 9 71628533 71628533 T G PRKACG Missense_Mutation p.H159P 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51J-06 9 80030909 80030909 C T VPS13A Missense_Mutation p.S3171F 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.707) TCGA-D3-A51J-06 9 86571377 86571377 G A C9orf64 Silent p.F13F 0.32 TCGA-D3-A51J-06 X 100075386 100075386 G A CSTF2 5'Flank 0.33 TCGA-D3-A51J-06 X 105450545 105450545 G A MUM1L1 Missense_Mutation p.E374K 0.56 tolerated(0.06) possibly_damaging(0.691) TCGA-D3-A51J-06 X 110496372 110496372 G A CAPN6 Missense_Mutation p.R124C 0.54 deleterious(0) probably_damaging(0.965) TCGA-D3-A51J-06 X 122538699 122538699 G A GRIA3 Silent p.G478G 0.56 TCGA-D3-A51J-06 X 122830592 122830592 A C THOC2 Missense_Mutation p.V149G 0.61 deleterious(0) benign(0.41) TCGA-D3-A51J-06 X 123514580 123514580 C T TENM1 Missense_Mutation p.E2669K 0.70 deleterious(0) probably_damaging(0.999) TCGA-D3-A51J-06 X 130215656 130215656 C T ARHGAP36 Missense_Mutation p.P6L 0.53 tolerated_low_confidence(0.21) probably_damaging(0.997) TCGA-D3-A51J-06 X 132160128 132160128 A C USP26 Missense_Mutation p.F707L 0.68 tolerated(0.42) benign(0.058) TCGA-D3-A51J-06 X 151935268 151935268 G A MAGEA3 Missense_Mutation p.S300F 0.55 deleterious(0.04) benign(0.02) TCGA-D3-A51J-06 X 17750674 17750674 A G NHS 3'UTR 0.62 TCGA-D3-A51J-06 X 3229574 3229574 G A MXRA5 Nonsense_Mutation p.R2224* 0.44 TCGA-D3-A51J-06 X 3239148 3239148 C T MXRA5 Silent p.K1526K 0.59 TCGA-D3-A51J-06 X 3239944 3239944 G A MXRA5 Missense_Mutation p.P1261L 0.54 deleterious(0.02) benign(0.009) TCGA-D3-A51J-06 X 3239945 3239945 G A MXRA5 Missense_Mutation p.P1261S 0.54 deleterious(0.03) benign(0.044) TCGA-D3-A51J-06 X 3241395 3241395 C T MXRA5 Silent p.Q777Q 0.37 TCGA-D3-A51J-06 X 36091333 36091333 G A CHDC2 Missense_Mutation p.E90K 0.45 tolerated(0.09) benign(0.043) TCGA-D3-A51J-06 X 48847550 48847550 G A GRIPAP1 Intron 0.50 TCGA-D3-A51K-06 11 48328357 48328357 C G OR4S1 Missense_Mutation p.L195V 0.33 tolerated(0.41) probably_damaging(0.998) TCGA-D3-A51K-06 11 488240 488240 C T PTDSS2 Silent p.S221S 0.38 TCGA-D3-A51K-06 11 55999650 55999650 C T OR5T2 Missense_Mutation p.D338N 0.44 tolerated(0.09) benign(0.002) TCGA-D3-A51K-06 12 46765123 46765123 T C SLC38A2 5'UTR 0.43 TCGA-D3-A51K-06 12 56118106 56118106 A G RDH5 Missense_Mutation p.Y245C 0.56 tolerated(0.11) benign(0.022) TCGA-D3-A51K-06 12 86373411 86373411 C G MGAT4C Missense_Mutation p.D365H 0.35 deleterious(0.03) possibly_damaging(0.497) TCGA-D3-A51K-06 13 25005568 25005568 A C PARP4 Missense_Mutation p.L1598R 0.74 deleterious(0) possibly_damaging(0.832) TCGA-D3-A51K-06 13 93879680 93879680 G C GPC6 5'UTR 0.37 TCGA-D3-A51K-06 14 24842570 24842570 C T NFATC4 Missense_Mutation p.A581V 0.58 tolerated(0.18) benign(0.208) TCGA-D3-A51K-06 14 39870734 39870734 G T FBXO33 Missense_Mutation p.H348N 0.33 tolerated(0.27) benign(0) TCGA-D3-A51K-06 14 77873092 77873092 T C NOXRED1 Silent p.Q219Q 0.45 TCGA-D3-A51K-06 17 1198820 1198820 C T TUSC5 Silent p.G141G 0.47 TCGA-D3-A51K-06 17 39675124 39675124 T G KRT15 5'UTR 0.42 TCGA-D3-A51K-06 17 40557304 40557304 G T PTRF Missense_Mutation p.P192T 0.38 tolerated(0.48) benign(0.168) TCGA-D3-A51K-06 17 48822059 48822059 A C LUC7L3 Missense_Mutation p.E193A 0.43 deleterious(0) unknown(0) TCGA-D3-A51K-06 18 77659210 77659210 G A KCNG2 Silent p.S265S 0.13 TCGA-D3-A51K-06 1 233135047 233135047 G A PCNXL2 Missense_Mutation p.R1803C 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A51K-06 1 247978230 247978230 C T OR14A16 Missense_Mutation p.D268N 0.13 tolerated(0.07) benign(0.02) TCGA-D3-A51K-06 1 39797463 39797463 G T MACF1 Intron 0.32 TCGA-D3-A51K-06 2 226378288 226378288 C T NYAP2 Silent p.P141P 0.80 TCGA-D3-A51K-06 3 170244647 170244647 G T SLC7A14 Missense_Mutation p.L27I 0.40 tolerated(0.96) benign(0.026) TCGA-D3-A51K-06 4 55593661 55593661 T C KIT Missense_Mutation p.L576P 0.95 deleterious(0.02) benign(0.249) TCGA-D3-A51K-06 4 55968150 55968150 A C KDR Missense_Mutation p.V727G 0.52 deleterious(0) probably_damaging(0.978) TCGA-D3-A51K-06 4 77305423 77305423 G T CCDC158 Missense_Mutation p.H182N 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-D3-A51K-06 5 138860911 138860911 A G TMEM173 Missense_Mutation p.W82R 0.67 deleterious(0.05) benign(0.176) TCGA-D3-A51K-06 5 141316848 141316848 A G KIAA0141 Missense_Mutation p.Y412C 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A51K-06 6 152694294 152694294 C A SYNE1 Nonsense_Mutation p.E3129* 0.82 TCGA-D3-A51K-06 6 31513145 31513145 G A ATP6V1G2 3'UTR 0.29 TCGA-D3-A51K-06 7 142131827 142131827 A G TRBV5-6 Splice_Site p.X17_splice 0.19 TCGA-D3-A51K-06 8 145095490 145095490 C T SPATC1 Missense_Mutation p.P263L 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A51K-06 8 41548083 41548083 G T ANK1 Missense_Mutation p.S1339Y 0.24 tolerated(0.13) possibly_damaging(0.543) TCGA-D3-A51K-06 X 48458075 48458075 C G WDR13 Missense_Mutation p.H165D 0.39 deleterious(0) probably_damaging(0.986) TCGA-D3-A51N-06 10 115401143 115401143 A G NRAP Missense_Mutation p.V435A 0.53 tolerated(0.21) benign(0.029) TCGA-D3-A51N-06 10 126714720 126714720 G A CTBP2 Missense_Mutation p.P537S 0.45 deleterious_low_confidence(0.05) benign(0.007) TCGA-D3-A51N-06 10 35930253 35930253 G C FZD8 Missense_Mutation p.C35W 0.26 deleterious(0) benign(0.16) TCGA-D3-A51N-06 10 69881855 69881855 G A MYPN Silent p.R220R 0.43 TCGA-D3-A51N-06 10 97779025 97779025 C A CC2D2B Silent p.G196G 0.44 TCGA-D3-A51N-06 11 20939745 20939745 G A NELL1 Silent p.G207G 0.24 TCGA-D3-A51N-06 11 4566966 4566966 T C OR52M1 Silent p.C182C 0.32 TCGA-D3-A51N-06 11 4790452 4790452 G A OR51F1 Silent p.S232S 0.30 TCGA-D3-A51N-06 11 48238844 48238844 C T OR4B1 Silent p.I161I 0.34 TCGA-D3-A51N-06 11 5290762 5290762 C T HBE1 Missense_Mutation p.M79I 0.19 tolerated(0.05) benign(0.005) TCGA-D3-A51N-06 11 55703685 55703685 G A OR5I1 Silent p.F64F 0.26 TCGA-D3-A51N-06 11 56086268 56086268 G A OR8K3 Silent p.K162K 0.24 TCGA-D3-A51N-06 11 5863093 5863093 G A OR52E6 Missense_Mutation p.S12F 0.50 tolerated(0.16) possibly_damaging(0.595) TCGA-D3-A51N-06 11 63666126 63666126 C A MARK2 Silent p.V128V 0.36 TCGA-D3-A51N-06 11 92577337 92577337 G A FAT3 Missense_Mutation p.D3602N 0.33 probably_damaging(1) TCGA-D3-A51N-06 12 120594339 120594339 C T GCN1L1 Missense_Mutation p.E1080K 0.26 possibly_damaging(0.872) TCGA-D3-A51N-06 12 130648310 130648310 G A FZD10 Missense_Mutation p.V275M 0.03 deleterious(0.04) possibly_damaging(0.49) TCGA-D3-A51N-06 12 86373155 86373155 G A MGAT4C Missense_Mutation p.P450L 0.37 tolerated(0.3) benign(0.002) TCGA-D3-A51N-06 12 89745740 89745741 - G DUSP6 Frame_Shift_Ins p.Q26Pfs*45 0.28 TCGA-D3-A51N-06 13 24895859 24895859 G A C1QTNF9 Missense_Mutation p.D319N 0.19 deleterious(0.04) probably_damaging(1) TCGA-D3-A51N-06 13 35624410 35624410 C T NBEA Missense_Mutation p.R284C 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A51N-06 14 76525160 76525160 C G IFT43 Intron 0.62 TCGA-D3-A51N-06 15 101434311 101434311 T C ALDH1A3 Intron 0.39 TCGA-D3-A51N-06 15 29346493 29346493 G C APBA2 Missense_Mutation p.E136Q 0.10 deleterious_low_confidence(0.01) benign(0.081) TCGA-D3-A51N-06 15 65369922 65369922 G A KBTBD13 Missense_Mutation p.D257N 0.30 tolerated(0.08) benign(0.023) TCGA-D3-A51N-06 15 72172810 72172810 G A MYO9A Missense_Mutation p.P1830S 0.21 tolerated(0.18) probably_damaging(0.999) TCGA-D3-A51N-06 15 89424928 89424928 C T HAPLN3 Silent p.V51V 0.31 TCGA-D3-A51N-06 16 1270406 1270406 G A CACNA1H Silent p.A2158A 0.33 TCGA-D3-A51N-06 16 20476956 20476956 G A ACSM2A Missense_Mutation p.G99R 0.10 tolerated(0.27) benign(0.061) TCGA-D3-A51N-06 16 335423 335423 C T PDIA2 Missense_Mutation p.R303C 0.19 deleterious(0.04) possibly_damaging(0.65) TCGA-D3-A51N-06 16 731537 731537 G A STUB1 Missense_Mutation p.R153Q 0.50 tolerated(0.18) benign(0.001) TCGA-D3-A51N-06 17 10303993 10303993 C T MYH8 Missense_Mutation p.S1150N 0.20 tolerated(0.1) possibly_damaging(0.9) TCGA-D3-A51N-06 17 10432372 10432372 C T MYH2 Missense_Mutation p.E1127K 0.28 deleterious(0.03) possibly_damaging(0.897) TCGA-D3-A51N-06 17 11539984 11539984 C T DNAH9 Missense_Mutation p.P557S 0.12 possibly_damaging(0.513) TCGA-D3-A51N-06 17 38645149 38645149 G A TNS4 Missense_Mutation p.S171F 0.46 tolerated(0.15) possibly_damaging(0.828) TCGA-D3-A51N-06 17 73035062 73035062 G A ATP5H Missense_Mutation p.P151S 0.21 deleterious(0.03) possibly_damaging(0.562) TCGA-D3-A51N-06 18 21422579 21422579 C T LAMA3 Silent p.S1156S 0.40 TCGA-D3-A51N-06 18 21438729 21438729 G A LAMA3 Missense_Mutation p.C1453Y 0.06 probably_damaging(1) TCGA-D3-A51N-06 18 31537407 31537407 G A NOL4 Silent p.I437I 0.33 TCGA-D3-A51N-06 18 72997587 72997587 G A TSHZ1 Silent p.G30G 0.41 TCGA-D3-A51N-06 18 72997588 72997588 T A TSHZ1 Missense_Mutation p.S31T 0.40 deleterious(0) probably_damaging(0.995) TCGA-D3-A51N-06 19 15349125 15349125 C T BRD4 3'UTR 0.48 TCGA-D3-A51N-06 19 23159264 23159264 G C ZNF728 Missense_Mutation p.A292G 0.12 deleterious(0.03) benign(0.125) TCGA-D3-A51N-06 19 38983156 38983156 G A RYR1 Missense_Mutation p.E2052K 0.24 benign(0.246) TCGA-D3-A51N-06 19 52941272 52941272 G A ZNF534 Missense_Mutation p.G200R 0.23 tolerated(0.13) benign(0.001) TCGA-D3-A51N-06 19 53793030 53793030 C T BIRC8 Missense_Mutation p.V200I 0.05 deleterious(0) possibly_damaging(0.898) TCGA-D3-A51N-06 19 56329460 56329460 C T NLRP11 Silent p.K27K 0.29 TCGA-D3-A51N-06 19 9067504 9067504 C A MUC16 Nonsense_Mutation p.E6648* 0.35 TCGA-D3-A51N-06 1 110740831 110740831 C T SLC6A17 Missense_Mutation p.T650I 0.07 tolerated(0.21) benign(0.042) TCGA-D3-A51N-06 1 11288973 11288973 C T MTOR Missense_Mutation p.D928N 0.32 tolerated(0.05) possibly_damaging(0.703) TCGA-D3-A51N-06 1 11562762 11562762 C T PTCHD2 Missense_Mutation p.P375L 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A51N-06 1 12091833 12091833 C T MIIP Missense_Mutation p.P379S 0.30 tolerated(0.26) unknown(0) TCGA-D3-A51N-06 1 155582013 155582013 G A MSTO1 Missense_Mutation p.G240E 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51N-06 1 156814331 156814331 G A INSRR Missense_Mutation p.S887F 0.32 deleterious(0) probably_damaging(0.983) TCGA-D3-A51N-06 1 159558215 159558215 G A APCS Missense_Mutation p.G130E 0.45 tolerated(0.06) possibly_damaging(0.564) TCGA-D3-A51N-06 1 186415629 186415629 C T PDC Missense_Mutation p.E48K 0.30 tolerated(0.18) benign(0.066) TCGA-D3-A51N-06 1 202569531 202569531 G C SYT2 Missense_Mutation p.I291M 0.35 deleterious(0) benign(0.101) TCGA-D3-A51N-06 1 228494091 228494091 G A OBSCN Missense_Mutation p.R4850Q 0.39 benign(0.147) TCGA-D3-A51N-06 1 55118697 55118697 C T MROH7 Missense_Mutation p.T33I 0.30 deleterious_low_confidence(0.05) benign(0.022) TCGA-D3-A51N-06 1 71478001 71478001 C T PTGER3 Missense_Mutation p.R355Q 0.32 tolerated(0.2) benign(0.023) TCGA-D3-A51N-06 20 31389147 31389147 G A DNMT3B Missense_Mutation p.G687D 0.27 tolerated(0.26) probably_damaging(0.998) TCGA-D3-A51N-06 20 35443640 35443640 G A SOGA1 Silent p.L735L 0.35 TCGA-D3-A51N-06 20 39721212 39721213 AA - TOP1 Frame_Shift_Del p.K239Vfs*4 0.08 TCGA-D3-A51N-06 20 42089713 42089713 C T SRSF6 3'UTR 0.36 TCGA-D3-A51N-06 20 52644805 52644805 C T BCAS1 Intron 0.45 TCGA-D3-A51N-06 21 18919380 18919380 G A CXADR Missense_Mutation p.E27K 0.32 tolerated(0.29) benign(0.01) TCGA-D3-A51N-06 21 19716377 19716377 C T TMPRSS15 Missense_Mutation p.G391E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A51N-06 21 28307054 28307054 C T ADAMTS5 Missense_Mutation p.D474N 0.37 deleterious(0) possibly_damaging(0.572) TCGA-D3-A51N-06 21 41385074 41385074 C T DSCAM Missense_Mutation p.G1976R 0.12 tolerated_low_confidence(0.24) benign(0.001) TCGA-D3-A51N-06 22 32647839 32647839 C T SLC5A4 Missense_Mutation p.S77N 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A51N-06 22 41832983 41832983 G A TOB2 Missense_Mutation p.P123S 0.33 tolerated(0.71) benign(0.003) TCGA-D3-A51N-06 3 108380784 108380784 C T DZIP3 Nonsense_Mutation p.Q754* 0.33 TCGA-D3-A51N-06 3 108677852 108677852 C T MORC1 Missense_Mutation p.R972K 0.44 tolerated_low_confidence(0.93) benign(0.01) TCGA-D3-A51N-06 3 11356956 11356956 C A ATG7 Missense_Mutation p.Q223K 0.11 tolerated(0.93) benign(0.002) TCGA-D3-A51N-06 3 120764302 120764302 T C STXBP5L Silent p.S130S 0.34 TCGA-D3-A51N-06 3 170108972 170108972 T A SKIL Nonsense_Mutation p.L607* 0.23 TCGA-D3-A51N-06 3 184094079 184094079 C T THPO 5'UTR 0.31 TCGA-D3-A51N-06 3 185167818 185167818 G A MAP3K13 Missense_Mutation p.G381R 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A51N-06 3 32932226 32932226 T G TRIM71 Nonsense_Mutation p.Y510* 0.33 TCGA-D3-A51N-06 3 43345095 43345095 C T SNRK Missense_Mutation p.H134Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A51N-06 3 49933493 49933493 G A MST1R Silent p.T899T 0.04 TCGA-D3-A51N-06 4 190873424 190873424 G C FRG1 Missense_Mutation p.G81R 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51N-06 4 36085069 36085069 T C ARAP2 Missense_Mutation p.S1477G 0.29 deleterious(0.02) benign(0.417) TCGA-D3-A51N-06 4 69520892 69520892 C T UGT2B15 Nonsense_Mutation p.W338* 0.10 TCGA-D3-A51N-06 5 127611782 127611782 C G FBN2 Missense_Mutation p.Q2514H 0.25 tolerated(0.24) benign(0.048) TCGA-D3-A51N-06 5 140347662 140347662 C T PCDHAC2 Silent p.I437I 0.28 TCGA-D3-A51N-06 5 140503690 140503690 G A PCDHB4 Missense_Mutation p.V704M 0.06 deleterious_low_confidence(0.02) benign(0.099) TCGA-D3-A51N-06 5 140789041 140789041 C T PCDHGB6 Silent p.A424A 0.47 TCGA-D3-A51N-06 5 150722469 150722469 C T SLC36A2 Silent p.Q140Q 0.17 TCGA-D3-A51N-06 5 153789237 153789237 G C GALNT10 Missense_Mutation p.S434T 0.34 tolerated(0.36) benign(0.001) TCGA-D3-A51N-06 5 16463621 16463621 A T ZNF622 Missense_Mutation p.S286T 0.31 tolerated(0.54) benign(0.207) TCGA-D3-A51N-06 5 31401418 31401418 T A DROSHA 3'UTR 0.21 TCGA-D3-A51N-06 5 35876476 35876476 C T IL7R Missense_Mutation p.S423F 0.43 deleterious(0.04) possibly_damaging(0.704) TCGA-D3-A51N-06 5 65466627 65466627 G A SREK1 Missense_Mutation p.D446N 0.32 tolerated_low_confidence(0.12) unknown(0) TCGA-D3-A51N-06 6 160858126 160858126 C G SLC22A3 Missense_Mutation p.L391V 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51N-06 6 31475299 31475299 G T MICB Nonsense_Mutation p.E339* 0.22 TCGA-D3-A51N-06 6 33690846 33690846 C T IP6K3 Missense_Mutation p.R295Q 0.06 deleterious(0.02) possibly_damaging(0.557) TCGA-D3-A51N-06 6 35426104 35426104 C T FANCE Missense_Mutation p.P334S 0.34 tolerated(1) benign(0.021) TCGA-D3-A51N-06 6 41708265 41708265 A G PGC Missense_Mutation p.V244A 0.04 deleterious(0) probably_damaging(0.987) TCGA-D3-A51N-06 6 46108032 46108032 C T ENPP4 Missense_Mutation p.H238Y 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51N-06 6 4937824 4937824 T C CDYL Missense_Mutation p.L325P 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51N-06 6 57512670 57512670 G A PRIM2 3'UTR 0.09 TCGA-D3-A51N-06 6 63990574 63990574 C T LGSN Silent p.R294R 0.40 TCGA-D3-A51N-06 7 101740668 101740668 G A CUX1 Missense_Mutation p.G109E 0.33 deleterious(0) unknown(0) TCGA-D3-A51N-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-D3-A51N-06 7 142658514 142658514 G A KEL Silent p.I52I 0.37 TCGA-D3-A51N-06 7 148080866 148080866 G A CNTNAP2 Missense_Mutation p.A1201T 0.62 deleterious(0.05) benign(0.06) TCGA-D3-A51N-06 7 63720659 63720659 G A ZNF679 Missense_Mutation p.D34N 0.14 tolerated(0.08) benign(0.072) TCGA-D3-A51N-06 7 83036423 83036423 C T SEMA3E Missense_Mutation p.R268Q 0.40 tolerated(0.42) probably_damaging(0.981) TCGA-D3-A51N-06 8 103238242 103238242 G A RRM2B Silent p.L75L 0.38 TCGA-D3-A51N-06 8 117658843 117658843 C A EIF3H Splice_Site p.X277_splice 0.26 TCGA-D3-A51N-06 8 144940288 144940288 G T EPPK1 Missense_Mutation p.D2378E 0.05 benign(0.036) TCGA-D3-A51N-06 8 144992531 144992531 G A PLEC Silent p.L3957L 0.44 TCGA-D3-A51N-06 9 107457571 107457571 T G OR13D1 Missense_Mutation p.M290R 0.52 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A51N-06 9 130482589 130482589 C T TTC16 Missense_Mutation p.T191M 0.48 deleterious(0.02) benign(0.12) TCGA-D3-A51N-06 X 123615714 123615714 G A TENM1 Missense_Mutation p.L1273F 0.22 deleterious(0.04) benign(0.07) TCGA-D3-A51N-06 X 152226399 152226399 C T PNMA3 Silent p.L329L 0.25 TCGA-D3-A51N-06 X 153053383 153053383 G A IDH3G Silent p.V145V 0.05 TCGA-D3-A51N-06 X 30683659 30683659 G A GK Missense_Mutation p.S37N 0.20 deleterious(0.04) benign(0.012) TCGA-D3-A51N-06 X 77224485 77224485 G A PGAM4 Silent p.V217V 0.25 TCGA-D3-A51N-06 X 9862879 9862879 C T SHROOM2 Missense_Mutation p.P311S 0.29 tolerated(0.69) probably_damaging(0.959) TCGA-D3-A51R-06 10 100013501 100013501 C T LOXL4 Silent p.L548L 0.47 TCGA-D3-A51R-06 10 100148193 100148193 G A PYROXD2 Silent p.S455S 0.37 TCGA-D3-A51R-06 10 102546733 102546733 G A PAX2 Missense_Mutation p.G217E 0.22 tolerated(0.08) benign(0) TCGA-D3-A51R-06 10 102824051 102824051 G A KAZALD1 Nonsense_Mutation p.W182* 0.60 TCGA-D3-A51R-06 10 105819932 105819932 G A COL17A1 Silent p.I362I 0.34 TCGA-D3-A51R-06 10 106214249 106214249 G A CCDC147 Silent p.G860G 0.47 TCGA-D3-A51R-06 10 117027875 117027875 G A ATRNL1 Nonsense_Mutation p.W685* 0.34 TCGA-D3-A51R-06 10 118137945 118137945 G A CCDC172 Missense_Mutation p.E222K 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 10 119799982 119799982 T A RAB11FIP2 Missense_Mutation p.S150C 0.46 deleterious(0) probably_damaging(0.995) TCGA-D3-A51R-06 10 123279642 123279642 C T FGFR2 Missense_Mutation p.A264T 0.50 deleterious(0.05) possibly_damaging(0.742) TCGA-D3-A51R-06 10 124034607 124034607 C T BTBD16 Missense_Mutation p.S4L 0.48 tolerated(0.16) benign(0) TCGA-D3-A51R-06 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 10 124395580 124395580 C T DMBT1 Nonsense_Mutation p.R2079* 0.44 TCGA-D3-A51R-06 10 129350899 129350899 C T NPS Missense_Mutation p.S89L 0.44 deleterious(0) benign(0.342) TCGA-D3-A51R-06 10 135076475 135076475 G A ADAM8 3'UTR 0.35 TCGA-D3-A51R-06 10 135372833 135372833 C T SYCE1 Silent p.L56L 0.49 TCGA-D3-A51R-06 10 15113850 15113850 C T OLAH Missense_Mutation p.S263F 0.52 deleterious(0) probably_damaging(0.997) TCGA-D3-A51R-06 10 15255091 15255091 C T FAM171A1 Silent p.Q832Q 0.51 TCGA-D3-A51R-06 10 17363326 17363326 T A ST8SIA6 Nonsense_Mutation p.K250* 0.39 TCGA-D3-A51R-06 10 20432305 20432305 C T PLXDC2 Missense_Mutation p.P208L 0.33 deleterious(0.01) possibly_damaging(0.831) TCGA-D3-A51R-06 10 25888039 25888039 C T GPR158 Nonsense_Mutation p.Q1162* 0.35 TCGA-D3-A51R-06 10 28276336 28276336 C T ARMC4 Missense_Mutation p.E121K 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 10 30315398 30315398 C T KIAA1462 Missense_Mutation p.A1227T 0.05 tolerated(0.33) benign(0.023) TCGA-D3-A51R-06 10 38484548 38484548 G A RP11-508N22.8 RNA 0.26 TCGA-D3-A51R-06 10 44053108 44053108 A C ZNF239 Missense_Mutation p.N140K 0.43 tolerated(0.12) benign(0.002) TCGA-D3-A51R-06 10 45499062 45499062 C T ZNF22 Silent p.S82S 0.42 TCGA-D3-A51R-06 10 48390024 48390024 G A RBP3 Missense_Mutation p.S285F 0.45 deleterious(0) probably_damaging(0.992) TCGA-D3-A51R-06 10 49420144 49420144 C T FRMPD2 Silent p.E488E 0.35 TCGA-D3-A51R-06 10 50532304 50532304 C T C10orf71 Missense_Mutation p.P572S 0.34 tolerated(0.45) benign(0.002) TCGA-D3-A51R-06 10 50944217 50944217 G T OGDHL Missense_Mutation p.P921T 0.53 deleterious(0) probably_damaging(0.962) TCGA-D3-A51R-06 10 50954001 50954001 C T OGDHL Missense_Mutation p.R440Q 0.51 deleterious(0.01) possibly_damaging(0.603) TCGA-D3-A51R-06 10 52575874 52575874 G A A1CF Missense_Mutation p.P353S 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A51R-06 10 54040559 54040559 G T PRKG1 Nonsense_Mutation p.E472* 0.49 TCGA-D3-A51R-06 10 54530438 54530438 T C MBL2 Missense_Mutation p.K99R 0.39 tolerated(0.14) benign(0.102) TCGA-D3-A51R-06 10 61830189 61830189 T G ANK3 Missense_Mutation p.S3484R 0.62 benign(0.146) TCGA-D3-A51R-06 10 61834088 61834088 G A ANK3 Missense_Mutation p.P2184L 0.35 benign(0.041) TCGA-D3-A51R-06 10 6539198 6539198 C T PRKCQ Silent p.Q186Q 0.52 TCGA-D3-A51R-06 10 69948661 69948661 G A MYPN Splice_Site p.X902_splice 0.48 TCGA-D3-A51R-06 10 70641765 70641765 C T STOX1 Missense_Mutation p.P121L 0.44 deleterious(0.03) possibly_damaging(0.712) TCGA-D3-A51R-06 10 70679599 70679599 C T DDX50 Silent p.I367I 0.36 TCGA-D3-A51R-06 10 71853498 71853498 C T H2AFY2 Missense_Mutation p.P162L 0.52 tolerated(0.13) benign(0) TCGA-D3-A51R-06 10 74806756 74806756 G A P4HA1 Missense_Mutation p.P335L 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 10 77158877 77158877 G A ZNF503 Missense_Mutation p.P524L 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 10 79572091 79572091 G A DLG5 Missense_Mutation p.S1357L 0.42 tolerated(0.23) benign(0.019) TCGA-D3-A51R-06 10 89127097 89127097 C T NUTM2D Missense_Mutation p.P548S 0.40 tolerated_low_confidence(0.17) possibly_damaging(0.483) TCGA-D3-A51R-06 10 89127098 89127098 C T NUTM2D Missense_Mutation p.P548L 0.40 tolerated_low_confidence(0.16) possibly_damaging(0.683) TCGA-D3-A51R-06 10 90582677 90582677 C T ANKRD22 3'UTR 0.45 TCGA-D3-A51R-06 10 91137884 91137884 C T IFIT1B 5'UTR 0.57 TCGA-D3-A51R-06 10 93716288 93716288 T G BTAF1 Missense_Mutation p.N235K 0.35 tolerated(0.14) benign(0.005) TCGA-D3-A51R-06 10 96447651 96447651 G A CYP2C18 Missense_Mutation p.G98E 0.43 deleterious(0.01) possibly_damaging(0.631) TCGA-D3-A51R-06 10 96602605 96602605 G A CYP2C19 Missense_Mutation p.E325K 0.54 tolerated(0.13) benign(0.1) TCGA-D3-A51R-06 11 118780708 118780708 C G BCL9L 5'UTR 0.95 TCGA-D3-A51R-06 11 123813765 123813765 G A OR6T1 Missense_Mutation p.R261C 0.90 deleterious(0) probably_damaging(0.995) TCGA-D3-A51R-06 11 123887040 123887040 C T OR10G4 Silent p.P253P 0.92 TCGA-D3-A51R-06 11 123909394 123909394 G A OR10G7 Silent p.F105F 0.70 TCGA-D3-A51R-06 11 124121020 124121020 C T OR8G1 Silent p.L200L 0.88 TCGA-D3-A51R-06 11 126333096 126333096 G A KIRREL3 Missense_Mutation p.A233V 0.96 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 11 18105252 18105252 T G SAAL1 Missense_Mutation p.I357L 0.97 tolerated(0.5) benign(0.108) TCGA-D3-A51R-06 11 18105253 18105253 G A SAAL1 Silent p.L356L 0.97 TCGA-D3-A51R-06 11 27679898 27679898 C T BDNF Missense_Mutation p.D154N 0.90 tolerated(0.23) benign(0.277) TCGA-D3-A51R-06 11 30255117 30255117 G A FSHB Missense_Mutation p.D54N 0.75 tolerated(0.05) possibly_damaging(0.523) TCGA-D3-A51R-06 11 40137651 40137651 C T LRRC4C Silent p.R64R 0.88 TCGA-D3-A51R-06 11 47732018 47732018 C T AGBL2 Missense_Mutation p.R48Q 0.93 tolerated_low_confidence(0.29) benign(0.001) TCGA-D3-A51R-06 11 49974850 49974850 G A OR4C13 Missense_Mutation p.M292I 0.96 tolerated_low_confidence(0.08) benign(0.012) TCGA-D3-A51R-06 11 5173466 5173466 G A OR52A1 Missense_Mutation p.S45F 0.93 tolerated(0.71) benign(0.005) TCGA-D3-A51R-06 11 5536175 5536175 G A UBQLNL 3'UTR 0.89 TCGA-D3-A51R-06 11 56114057 56114057 C G OR8K1 Missense_Mutation p.S181R 0.91 tolerated_low_confidence(0.59) benign(0.039) TCGA-D3-A51R-06 11 58170735 58170735 C T OR5B3 Missense_Mutation p.D50N 0.92 deleterious_low_confidence(0.01) benign(0.157) TCGA-D3-A51R-06 11 58190182 58190182 G A OR5B2 Silent p.L185L 0.90 TCGA-D3-A51R-06 11 5878118 5878118 T A OR52E8 Missense_Mutation p.N272I 0.91 deleterious(0) possibly_damaging(0.812) TCGA-D3-A51R-06 11 63143210 63143210 G A SLC22A9 Missense_Mutation p.M308I 0.92 tolerated(0.18) benign(0.01) TCGA-D3-A51R-06 11 63719957 63719957 C T NAA40 Silent p.I110I 0.91 TCGA-D3-A51R-06 11 65394966 65394966 C A PCNXL3 Missense_Mutation p.F1205L 0.92 deleterious(0.01) possibly_damaging(0.474) TCGA-D3-A51R-06 11 66802139 66802139 G A SYT12 Missense_Mutation p.E20K 0.88 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-D3-A51R-06 11 6898247 6898247 C T OR10A4 Silent p.R123R 0.82 TCGA-D3-A51R-06 11 7064768 7064768 C A NLRP14 Missense_Mutation p.S504Y 0.90 tolerated(0.66) benign(0.316) TCGA-D3-A51R-06 11 71249287 71249287 C T KRTAP5-8 Silent p.S62S 0.95 TCGA-D3-A51R-06 11 72406140 72406140 G A ARAP1 Silent p.V1193V 0.98 TCGA-D3-A51R-06 11 73759368 73759368 G A C2CD3 Missense_Mutation p.P1793S 0.91 tolerated(0.23) benign(0.012) TCGA-D3-A51R-06 11 7441863 7441863 G A SYT9 Silent p.V488V 0.91 TCGA-D3-A51R-06 11 75279839 75279839 C T SERPINH1 Missense_Mutation p.S229F 0.84 tolerated(0.06) benign(0.079) TCGA-D3-A51R-06 11 7960919 7960919 G A OR10A3 Missense_Mutation p.S50F 0.88 tolerated(0.73) benign(0.003) TCGA-D3-A51R-06 11 93822129 93822129 G A HEPHL1 Silent p.G763G 0.82 TCGA-D3-A51R-06 12 101381439 101381439 G A ANO4 Missense_Mutation p.R207K 0.42 tolerated(0.26) probably_damaging(0.997) TCGA-D3-A51R-06 12 102043085 102043085 G A MYBPC1 Missense_Mutation p.R390Q 0.48 deleterious(0) benign(0.151) TCGA-D3-A51R-06 12 104025427 104025427 C T STAB2 Missense_Mutation p.T180I 0.45 tolerated(0.08) possibly_damaging(0.478) TCGA-D3-A51R-06 12 10466052 10466052 C T KLRD1 Missense_Mutation p.S120F 0.48 tolerated(0.06) possibly_damaging(0.814) TCGA-D3-A51R-06 12 110252476 110252476 C T TRPV4 Silent p.G42G 0.62 TCGA-D3-A51R-06 12 111319004 111319004 G A CCDC63 Missense_Mutation p.E253K 0.48 tolerated(0.1) benign(0.126) TCGA-D3-A51R-06 12 117728120 117728120 G A NOS1 Missense_Mutation p.H322Y 0.68 deleterious(0.03) possibly_damaging(0.884) TCGA-D3-A51R-06 12 119968803 119968803 C T CCDC60 Silent p.L496L 0.52 TCGA-D3-A51R-06 12 123351826 123351826 G A VPS37B Missense_Mutation p.A232V 0.44 tolerated(0.18) benign(0.004) TCGA-D3-A51R-06 12 123806238 123806238 C T SBNO1 Missense_Mutation p.G723S 0.52 tolerated(0.31) benign(0) TCGA-D3-A51R-06 12 130846060 130846060 C T PIWIL1 Silent p.I628I 0.32 TCGA-D3-A51R-06 12 13529258 13529258 C T C12orf36 Missense_Mutation p.E28K 0.21 possibly_damaging(0.486) TCGA-D3-A51R-06 12 18841059 18841059 G A PLCZ1 Nonsense_Mutation p.Q519* 0.36 TCGA-D3-A51R-06 12 18891980 18891980 C T CAPZA3 Missense_Mutation p.L260F 0.40 deleterious(0.01) probably_damaging(1) TCGA-D3-A51R-06 12 2019087 2019087 G A CACNA2D4 Silent p.F157F 0.59 TCGA-D3-A51R-06 12 21615726 21615726 C T PYROXD1 Missense_Mutation p.S349F 0.44 deleterious(0) probably_damaging(0.994) TCGA-D3-A51R-06 12 2676817 2676817 C T CACNA1C Silent p.F584F 0.40 TCGA-D3-A51R-06 12 27152555 27152555 G A TM7SF3 Missense_Mutation p.L101F 0.50 deleterious(0) possibly_damaging(0.894) TCGA-D3-A51R-06 12 306561 306561 A C SLC6A12 Missense_Mutation p.S353A 0.30 tolerated(0.56) benign(0.036) TCGA-D3-A51R-06 12 32945277 32945277 G A PKP2 3'UTR 0.67 TCGA-D3-A51R-06 12 33559964 33559964 C T SYT10 Silent p.R279R 0.69 TCGA-D3-A51R-06 12 40114947 40114947 C T C12orf40 Missense_Mutation p.S618L 0.55 deleterious(0.04) possibly_damaging(0.487) TCGA-D3-A51R-06 12 40657610 40657610 G A LRRK2 Silent p.R521R 0.40 TCGA-D3-A51R-06 12 40657611 40657611 G A LRRK2 Missense_Mutation p.E522K 0.40 tolerated(0.72) benign(0.004) TCGA-D3-A51R-06 12 48189006 48189006 G A HDAC7 Silent p.P415P 0.46 TCGA-D3-A51R-06 12 50264237 50264237 G A FAIM2 3'UTR 0.49 TCGA-D3-A51R-06 12 50357928 50357928 G A AQP5 Silent p.V194V 0.44 TCGA-D3-A51R-06 12 51130860 51130860 C T DIP2B Silent p.T1381T 0.33 TCGA-D3-A51R-06 12 51685768 51685768 C T BIN2 Silent p.L374L 0.43 TCGA-D3-A51R-06 12 52709727 52709727 C T KRT83 Silent p.L404L 0.33 TCGA-D3-A51R-06 12 53096879 53096879 C T KRT77 Missense_Mutation p.G114S 0.42 tolerated(0.32) benign(0.043) TCGA-D3-A51R-06 12 53427596 53427596 C T EIF4B Missense_Mutation p.P329L 0.46 tolerated(0.43) benign(0.106) TCGA-D3-A51R-06 12 53454293 53454293 C T TENC1 Missense_Mutation p.P918S 0.45 tolerated(0.11) benign(0.077) TCGA-D3-A51R-06 12 54894365 54894365 C T NCKAP1L Missense_Mutation p.L88F 0.38 deleterious(0) benign(0.229) TCGA-D3-A51R-06 12 55028623 55028623 C T LACRT Translation_Start_Site p.M1? 0.47 deleterious_low_confidence(0) unknown(0) TCGA-D3-A51R-06 12 55420246 55420246 C T NEUROD4 Missense_Mutation p.S8F 0.29 deleterious(0.02) benign(0.309) TCGA-D3-A51R-06 12 55820223 55820223 G A OR6C76 Silent p.R62R 0.52 TCGA-D3-A51R-06 12 5685010 5685010 G A ANO2 Nonsense_Mutation p.Q871* 0.45 TCGA-D3-A51R-06 12 57604513 57604513 G T LRP1 Missense_Mutation p.C4256F 0.34 possibly_damaging(0.898) TCGA-D3-A51R-06 12 57604514 57604514 C T LRP1 Silent p.C4256C 0.35 TCGA-D3-A51R-06 12 57604515 57604515 C A LRP1 Silent p.R4257R 0.36 TCGA-D3-A51R-06 12 5963220 5963220 G A ANO2 Missense_Mutation p.P204S 0.30 deleterious(0.02) possibly_damaging(0.791) TCGA-D3-A51R-06 12 6122811 6122811 C T VWF Missense_Mutation p.R1819K 0.39 tolerated(0.53) possibly_damaging(0.694) TCGA-D3-A51R-06 12 66221809 66221809 G A HMGA2 Missense_Mutation p.R47K 0.31 tolerated(0.11) benign(0.22) TCGA-D3-A51R-06 12 69252767 69252767 G A CPM Missense_Mutation p.P342L 0.36 deleterious(0) probably_damaging(0.996) TCGA-D3-A51R-06 12 69252768 69252768 G A CPM Missense_Mutation p.P342S 0.37 tolerated(0.11) probably_damaging(0.987) TCGA-D3-A51R-06 12 70964852 70964852 C T PTPRB Silent p.T1108T 0.35 TCGA-D3-A51R-06 12 7289561 7289561 C T CLSTN3 Silent p.P355P 0.39 TCGA-D3-A51R-06 12 75737656 75737656 G A GLIPR1L1 Missense_Mutation p.E120K 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 12 7633803 7633803 C T CD163 Missense_Mutation p.M1099I 0.43 tolerated(0.58) probably_damaging(0.991) TCGA-D3-A51R-06 12 7651747 7651747 C T CD163 Silent p.G165G 0.44 TCGA-D3-A51R-06 12 76749626 76749626 A T OSBPL8 3'UTR 0.35 TCGA-D3-A51R-06 12 78522585 78522585 T C NAV3 Silent p.P1460P 0.45 TCGA-D3-A51R-06 12 86373091 86373091 C T MGAT4C Silent p.R471R 0.24 TCGA-D3-A51R-06 12 96180894 96180894 G A NTN4 Silent p.S136S 0.33 TCGA-D3-A51R-06 12 97057618 97057618 G A C12orf55 Missense_Mutation p.R1824Q 0.42 deleterious(0.01) possibly_damaging(0.873) TCGA-D3-A51R-06 13 101936301 101936301 C T NALCN Missense_Mutation p.A373T 0.32 tolerated(0.11) possibly_damaging(0.459) TCGA-D3-A51R-06 13 25478179 25478179 G A CENPJ Nonsense_Mutation p.Q904* 0.37 TCGA-D3-A51R-06 13 25478180 25478180 G A CENPJ Silent p.S903S 0.35 TCGA-D3-A51R-06 13 29600549 29600549 C T MTUS2 Missense_Mutation p.P582S 0.40 tolerated(0.57) benign(0.007) TCGA-D3-A51R-06 13 37269321 37269321 G A SERTM1 Missense_Mutation p.G36S 0.44 tolerated_low_confidence(0.37) benign(0.022) TCGA-D3-A51R-06 13 39433696 39433696 G A FREM2 Missense_Mutation p.M2496I 0.58 tolerated(0.2) benign(0.006) TCGA-D3-A51R-06 13 43155265 43155265 G A TNFSF11 Missense_Mutation p.D75N 0.36 deleterious(0.03) probably_damaging(0.958) TCGA-D3-A51R-06 13 46287924 46287924 G A SPERT Missense_Mutation p.R255H 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 13 52509103 52509103 G A ATP7B Missense_Mutation p.T1396M 0.28 deleterious(0.05) possibly_damaging(0.816) TCGA-D3-A51R-06 13 73321085 73321085 G C BORA Missense_Mutation p.E440Q 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A51R-06 13 79189748 79189748 G A RNF219 Silent p.S716S 0.37 TCGA-D3-A51R-06 14 101350952 101350952 G A RTL1 Silent p.P58P 0.37 TCGA-D3-A51R-06 14 101442873 101442873 G A SNORD114-19 RNA 0.48 TCGA-D3-A51R-06 14 102486385 102486385 C T DYNC1H1 Silent p.F2833F 0.23 TCGA-D3-A51R-06 14 105407305 105407305 G A AHNAK2 Missense_Mutation p.S4828F 0.31 probably_damaging(0.915) TCGA-D3-A51R-06 14 106053549 106053549 G A IGHA2 Missense_Mutation p.R250C 0.33 deleterious(0) probably_damaging(0.964) TCGA-D3-A51R-06 14 107034835 107034835 G A IGHV5-51 Missense_Mutation p.S82F 0.53 deleterious(0.05) benign(0.015) TCGA-D3-A51R-06 14 20248980 20248980 C T OR4M1 Missense_Mutation p.P167S 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A51R-06 14 20404411 20404411 G A OR4K1 Missense_Mutation p.E196K 0.28 deleterious(0.04) possibly_damaging(0.626) TCGA-D3-A51R-06 14 20710962 20710962 C T OR11H4 Silent p.F4F 0.43 TCGA-D3-A51R-06 14 20711345 20711345 G A OR11H4 Missense_Mutation p.R132Q 0.57 deleterious(0.02) benign(0.406) TCGA-D3-A51R-06 14 22362782 22362782 C T TRAV8-4 Silent p.T14T 0.41 TCGA-D3-A51R-06 14 22994651 22994651 C T TRAJ18 Silent p.Y11Y 0.36 TCGA-D3-A51R-06 14 24566227 24566227 C T PCK2 Silent p.A52A 0.28 TCGA-D3-A51R-06 14 24566228 24566228 C T PCK2 Missense_Mutation p.R53C 0.28 deleterious(0.01) possibly_damaging(0.536) TCGA-D3-A51R-06 14 31119828 31119828 G A SCFD1 Missense_Mutation p.G243S 0.22 tolerated(0.35) benign(0.088) TCGA-D3-A51R-06 14 37180534 37180534 G A SLC25A21 Missense_Mutation p.P198S 0.32 deleterious(0.04) probably_damaging(1) TCGA-D3-A51R-06 14 47120418 47120418 C T RPL10L Silent p.T174T 0.34 TCGA-D3-A51R-06 14 52782019 52782019 G A PTGER2 Silent p.G251G 0.29 TCGA-D3-A51R-06 14 59789900 59789900 T C DAAM1 Missense_Mutation p.M244T 0.62 deleterious(0) unknown(0) TCGA-D3-A51R-06 14 59835523 59835523 C T DAAM1 Silent p.T1061T 0.30 TCGA-D3-A51R-06 14 60587958 60587958 C T PCNXL4 Missense_Mutation p.R429C 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A51R-06 14 64491906 64491906 G A SYNE2 Missense_Mutation p.E2007K 0.44 benign(0.039) TCGA-D3-A51R-06 14 64669617 64669617 C T SYNE2 Missense_Mutation p.S6046F 0.50 probably_damaging(1) TCGA-D3-A51R-06 14 65417111 65417111 T G RAB15 Missense_Mutation p.R159S 0.43 deleterious(0) possibly_damaging(0.765) TCGA-D3-A51R-06 14 67768120 67768120 G A MPP5 Silent p.L197L 0.38 TCGA-D3-A51R-06 14 70633363 70633363 C T SLC8A3 Missense_Mutation p.E593K 0.30 deleterious(0) probably_damaging(0.942) TCGA-D3-A51R-06 14 70990228 70990228 T G ADAM20 Missense_Mutation p.E466A 0.46 deleterious(0) probably_damaging(0.991) TCGA-D3-A51R-06 14 72055344 72055344 G A SIPA1L1 Missense_Mutation p.G252D 0.45 tolerated(0.38) benign(0.014) TCGA-D3-A51R-06 14 75329259 75329259 C T PROX2 Intron 0.48 TCGA-D3-A51R-06 14 75329260 75329260 C T PROX2 Intron 0.48 TCGA-D3-A51R-06 14 79175780 79175780 A G NRXN3 Missense_Mutation p.N108S 0.43 tolerated(0.15) probably_damaging(0.928) TCGA-D3-A51R-06 14 79746865 79746865 C T NRXN3 Intron 0.40 TCGA-D3-A51R-06 14 94088518 94088518 G A UNC79 Missense_Mutation p.E1470K 0.43 deleterious_low_confidence(0) benign(0.318) TCGA-D3-A51R-06 14 94505450 94505450 C T OTUB2 Intron 0.50 TCGA-D3-A51R-06 14 94756350 94756350 T A SERPINA10 Missense_Mutation p.N194I 0.37 deleterious(0) probably_damaging(0.956) TCGA-D3-A51R-06 14 99641458 99641458 C T BCL11B Missense_Mutation p.G572E 0.47 tolerated(0.94) benign(0.005) TCGA-D3-A51R-06 15 102346756 102346756 C T OR4F6 Silent p.I278I 0.45 TCGA-D3-A51R-06 15 39885772 39885772 G A THBS1 Missense_Mutation p.G1057E 0.82 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 15 40589088 40589088 G A PLCB2 Missense_Mutation p.P449S 0.96 deleterious(0.01) probably_damaging(1) TCGA-D3-A51R-06 15 41146265 41146265 C T SPINT1 Silent p.S323S 0.83 TCGA-D3-A51R-06 15 43559041 43559041 G T TGM5 Missense_Mutation p.Q3K 0.88 tolerated(0.84) benign(0) TCGA-D3-A51R-06 15 50212557 50212557 C T ATP8B4 Silent p.L603L 0.80 TCGA-D3-A51R-06 15 50786292 50786292 G A USP8 Missense_Mutation p.E825K 0.83 tolerated(0.14) probably_damaging(0.969) TCGA-D3-A51R-06 15 52561986 52561986 C T MYO5C Missense_Mutation p.E302K 0.89 deleterious(0) benign(0) TCGA-D3-A51R-06 15 65621443 65621443 G T IGDCC3 Missense_Mutation p.S750Y 0.78 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-D3-A51R-06 15 72582467 72582467 C T CELF6 Splice_Site p.X175_splice 0.56 TCGA-D3-A51R-06 15 74367330 74367330 G A GOLGA6A Missense_Mutation p.S287F 0.53 tolerated(0.08) benign(0.022) TCGA-D3-A51R-06 15 74536375 74536375 C T CCDC33 Missense_Mutation p.P24L 0.46 deleterious(0.04) benign(0.026) TCGA-D3-A51R-06 15 76191779 76191779 C T UBE2Q2 Missense_Mutation p.P370S 0.48 deleterious(0) possibly_damaging(0.857) TCGA-D3-A51R-06 15 78390841 78390842 - C SH2D7 Frame_Shift_Ins p.R185Pfs*41 0.35 TCGA-D3-A51R-06 15 83932432 83932432 G A BNC1 Missense_Mutation p.S524L 0.39 tolerated(0.07) benign(0.008) TCGA-D3-A51R-06 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.42 deleterious(0) probably_damaging(0.976) TCGA-D3-A51R-06 15 89398253 89398253 C T ACAN Missense_Mutation p.P813S 0.36 tolerated(0.36) benign(0) TCGA-D3-A51R-06 15 90212868 90212868 G A PLIN1 Missense_Mutation p.P212S 0.38 tolerated(0.18) benign(0.186) TCGA-D3-A51R-06 15 90349307 90349307 G A ANPEP Silent p.L170L 0.39 TCGA-D3-A51R-06 15 91519980 91519980 G A PRC1 Nonsense_Mutation p.R377* 0.51 TCGA-D3-A51R-06 15 97328251 97328251 C T SPATA8 Silent p.I74I 0.36 TCGA-D3-A51R-06 16 10631855 10631855 G A EMP2 Silent p.F82F 0.35 TCGA-D3-A51R-06 16 10783110 10783110 C G TEKT5 Missense_Mutation p.R240P 0.44 tolerated(0.14) probably_damaging(0.918) TCGA-D3-A51R-06 16 15870016 15870016 G C MYH11 Missense_Mutation p.R277G 0.42 possibly_damaging(0.736) TCGA-D3-A51R-06 16 16276734 16276734 C T ABCC6 Missense_Mutation p.G666E 0.39 deleterious(0) probably_damaging(0.996) TCGA-D3-A51R-06 16 20548646 20548646 C T ACSM2B Silent p.G556G 0.84 TCGA-D3-A51R-06 16 20638635 20638635 C T ACSM1 Missense_Mutation p.D435N 0.40 tolerated(1) benign(0.009) TCGA-D3-A51R-06 16 20696612 20696612 G A ACSM1 Silent p.F102F 0.49 TCGA-D3-A51R-06 16 20975021 20975021 G A DNAH3 Silent p.F3395F 0.49 TCGA-D3-A51R-06 16 23080218 23080218 G A USP31 Missense_Mutation p.P1070S 0.38 tolerated_low_confidence(0.39) benign(0.002) TCGA-D3-A51R-06 16 24268220 24268220 G A CACNG3 Missense_Mutation p.E49K 0.49 tolerated(0.11) benign(0.4) TCGA-D3-A51R-06 16 28900153 28900153 G A ATP2A1 Missense_Mutation p.R325Q 0.45 deleterious(0) possibly_damaging(0.712) TCGA-D3-A51R-06 16 2988248 2988248 C T FLYWCH1 Missense_Mutation p.S613F 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 16 3100499 3100499 G A MMP25 Missense_Mutation p.G205R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 16 31391098 31391098 G A ITGAX Silent p.R963R 0.25 TCGA-D3-A51R-06 16 335410 335410 G A PDIA2 Silent p.G298G 0.38 TCGA-D3-A51R-06 16 4245657 4245657 G A SRL Silent p.F169F 0.41 TCGA-D3-A51R-06 16 48221216 48221216 G A ABCC11 Silent p.V943V 0.35 TCGA-D3-A51R-06 16 55857580 55857580 G A CES1 Missense_Mutation p.H141Y 0.14 deleterious(0.01) possibly_damaging(0.68) TCGA-D3-A51R-06 16 55883554 55883554 C T CES5A Missense_Mutation p.G498R 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A51R-06 16 57707352 57707352 G A GPR97 Missense_Mutation p.D60N 0.35 tolerated(0.45) benign(0) TCGA-D3-A51R-06 16 57738844 57738844 G A CCDC135 Silent p.R252R 0.51 TCGA-D3-A51R-06 16 61935342 61935342 G A CDH8 Silent p.I96I 0.31 TCGA-D3-A51R-06 16 67858669 67858669 C T TSNAXIP1 Missense_Mutation p.S168L 0.16 deleterious(0) possibly_damaging(0.818) TCGA-D3-A51R-06 16 67911537 67911537 T G EDC4 Missense_Mutation p.V256G 0.49 deleterious(0) possibly_damaging(0.451) TCGA-D3-A51R-06 16 70363885 70363885 C T DDX19B Silent p.L313L 0.52 TCGA-D3-A51R-06 16 70989436 70989436 G A HYDIN Missense_Mutation p.A2053V 0.29 probably_damaging(0.971) TCGA-D3-A51R-06 16 71570565 71570565 C T CHST4 Intron 0.43 TCGA-D3-A51R-06 16 72094462 72094462 T C HP Silent p.Y298Y 0.44 TCGA-D3-A51R-06 16 74452089 74452089 C T CLEC18B Nonsense_Mutation p.W108* 0.25 TCGA-D3-A51R-06 16 83378555 83378555 G A CDH13 Missense_Mutation p.R289Q 0.49 deleterious(0) possibly_damaging(0.612) TCGA-D3-A51R-06 16 84229646 84229646 C T ADAD2 Silent p.I508I 0.55 TCGA-D3-A51R-06 16 88873800 88873800 A G CDT1 Missense_Mutation p.S463G 0.44 tolerated(0.69) benign(0.001) TCGA-D3-A51R-06 16 88945680 88945680 C T CBFA2T3 Missense_Mutation p.E554K 0.47 deleterious(0.03) benign(0.296) TCGA-D3-A51R-06 16 89628065 89628065 C T RPL13 Missense_Mutation p.S109F 0.44 deleterious(0) probably_damaging(0.961) TCGA-D3-A51R-06 17 10304276 10304276 C T MYH8 Silent p.K1085K 0.26 TCGA-D3-A51R-06 17 10408186 10408186 C T MYH1 Missense_Mutation p.E878K 0.40 tolerated(0.09) probably_damaging(0.998) TCGA-D3-A51R-06 17 11535956 11535956 G A DNAH9 Missense_Mutation p.R524Q 0.55 benign(0.187) TCGA-D3-A51R-06 17 20914557 20914557 G A USP22 Missense_Mutation p.P337L 0.45 tolerated(0.12) benign(0.1) TCGA-D3-A51R-06 17 27067869 27067869 C T NEK8 Missense_Mutation p.S533F 0.41 deleterious(0.03) benign(0.234) TCGA-D3-A51R-06 17 29587415 29587415 C T NF1 Missense_Mutation p.P1487S 0.43 tolerated(0.18) probably_damaging(0.986) TCGA-D3-A51R-06 17 36869266 36869266 C T MLLT6 Intron 0.47 TCGA-D3-A51R-06 17 38955779 38955779 C T KRT28 Missense_Mutation p.E123K 0.43 tolerated(0.08) benign(0.261) TCGA-D3-A51R-06 17 4005636 4005636 G A ZZEF1 Silent p.L549L 0.49 TCGA-D3-A51R-06 17 41008601 41008601 C T AOC3 3'UTR 0.37 TCGA-D3-A51R-06 17 42992767 42992767 G A GFAP Missense_Mutation p.R30C 0.39 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A51R-06 17 43923842 43923842 C T SPPL2C Missense_Mutation p.L524F 0.52 tolerated(0.06) probably_damaging(1) TCGA-D3-A51R-06 17 45297383 45297383 G A MYL4 Missense_Mutation p.E93K 0.35 deleterious(0.05) possibly_damaging(0.895) TCGA-D3-A51R-06 17 45369757 45369757 C T ITGB3 Missense_Mutation p.R505C 0.43 tolerated(0.07) benign(0.423) TCGA-D3-A51R-06 17 46135680 46135680 A G NFE2L1 Silent p.A332A 0.44 TCGA-D3-A51R-06 17 47123261 47123261 A G IGF2BP1 Missense_Mutation p.R469G 0.53 tolerated(0.09) benign(0.231) TCGA-D3-A51R-06 17 47294040 47294040 C T ABI3 Missense_Mutation p.R89C 0.36 deleterious(0.01) possibly_damaging(0.838) TCGA-D3-A51R-06 17 47794973 47794973 G A FAM117A Missense_Mutation p.P271L 0.32 tolerated(0.26) benign(0.226) TCGA-D3-A51R-06 17 48704093 48704093 C A CACNA1G Missense_Mutation p.P2372Q 0.47 tolerated_low_confidence(0.81) benign(0.002) TCGA-D3-A51R-06 17 48753824 48753824 C T ABCC3 Missense_Mutation p.P1085S 0.51 tolerated(0.76) benign(0.052) TCGA-D3-A51R-06 17 5085338 5085338 A T ZNF594 Nonsense_Mutation p.C738* 0.27 TCGA-D3-A51R-06 17 56604277 56604277 G A SEPT4 Silent p.F56F 0.42 TCGA-D3-A51R-06 17 60601685 60601685 C T TLK2 Missense_Mutation p.P119L 0.50 deleterious_low_confidence(0.04) benign(0.014) TCGA-D3-A51R-06 17 60821803 60821803 C T MARCH10 Missense_Mutation p.A157T 0.43 tolerated(0.17) benign(0.015) TCGA-D3-A51R-06 17 61987893 61987893 C T CSHL1 Missense_Mutation p.A65T 0.38 tolerated(0.61) benign(0.002) TCGA-D3-A51R-06 17 61995786 61995786 G A GH1 Missense_Mutation p.P31S 0.42 tolerated(0.18) probably_damaging(1) TCGA-D3-A51R-06 17 6329956 6329956 C T AIPL1 Missense_Mutation p.D255N 0.51 tolerated(0.15) benign(0.269) TCGA-D3-A51R-06 17 66872782 66872782 C T ABCA8 Missense_Mutation p.G1381E 0.41 deleterious(0.02) probably_damaging(1) TCGA-D3-A51R-06 17 66873812 66873812 C T ABCA8 Silent p.L1309L 0.44 TCGA-D3-A51R-06 17 66902208 66902208 C T ABCA8 Missense_Mutation p.G752E 0.41 tolerated(0.12) probably_damaging(0.99) TCGA-D3-A51R-06 17 67014668 67014668 A T ABCA9 Missense_Mutation p.Y885N 0.46 tolerated(0.21) benign(0.004) TCGA-D3-A51R-06 17 67023476 67023476 G A ABCA9 Missense_Mutation p.P636S 0.50 deleterious(0.03) probably_damaging(0.981) TCGA-D3-A51R-06 17 71357892 71357892 G A SDK2 Missense_Mutation p.R1800C 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 17 72301382 72301382 G A DNAI2 Missense_Mutation p.E338K 0.46 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A51R-06 17 7320372 7320372 C T NLGN2 Missense_Mutation p.R588C 0.47 deleterious(0) probably_damaging(0.996) TCGA-D3-A51R-06 17 7329631 7329631 C T C17orf74 Silent p.F107F 0.49 TCGA-D3-A51R-06 17 73493206 73493206 C T KIAA0195 Silent p.L1112L 0.33 TCGA-D3-A51R-06 17 79914551 79914551 G A NOTUM Silent p.G321G 0.42 TCGA-D3-A51R-06 17 8659749 8659749 G A SPDYE4 Missense_Mutation p.P116S 0.44 deleterious(0.02) benign(0.21) TCGA-D3-A51R-06 18 11999180 11999180 C T IMPA2 Missense_Mutation p.S75L 0.34 deleterious(0.02) benign(0.097) TCGA-D3-A51R-06 18 19110215 19110215 A G ESCO1 3'UTR 0.58 TCGA-D3-A51R-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.35 TCGA-D3-A51R-06 18 19996085 19996085 G A CTAGE1 Silent p.L564L 0.43 TCGA-D3-A51R-06 18 28913665 28913665 C T DSG1 Silent p.I266I 0.29 TCGA-D3-A51R-06 18 29797013 29797013 C T MEP1B Missense_Mutation p.L607F 0.53 tolerated(0.72) benign(0.013) TCGA-D3-A51R-06 18 30254500 30254500 G A KLHL14 3'UTR 0.31 TCGA-D3-A51R-06 18 39629611 39629611 C T PIK3C3 Intron 0.63 TCGA-D3-A51R-06 18 40850360 40850360 G A SYT4 Silent p.I408I 0.41 TCGA-D3-A51R-06 18 43249460 43249460 C T SLC14A2 Silent p.P742P 0.43 TCGA-D3-A51R-06 18 47101933 47101933 G A LIPG Missense_Mutation p.D256N 0.32 tolerated(0.28) benign(0.365) TCGA-D3-A51R-06 18 50432674 50432674 G A DCC Missense_Mutation p.E225K 0.37 deleterious(0.02) benign(0.19) TCGA-D3-A51R-06 18 52544958 52544958 G A RAB27B Missense_Mutation p.E48K 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A51R-06 18 56203736 56203736 C T ALPK2 Missense_Mutation p.G1228E 0.43 tolerated(0.07) benign(0.295) TCGA-D3-A51R-06 18 67365778 67365778 C T DOK6 Missense_Mutation p.S183L 0.55 tolerated(0.11) benign(0.141) TCGA-D3-A51R-06 18 72999404 72999404 C G TSHZ1 Missense_Mutation p.P636R 0.44 tolerated(0.06) possibly_damaging(0.494) TCGA-D3-A51R-06 18 74963125 74963125 C T GALR1 Silent p.F207F 0.42 TCGA-D3-A51R-06 19 14730220 14730220 C T EMR3 3'UTR 0.44 TCGA-D3-A51R-06 19 14758153 14758153 G A EMR3 Missense_Mutation p.S241L 0.26 deleterious(0.01) benign(0.396) TCGA-D3-A51R-06 19 15791071 15791071 G A CYP4F12 Missense_Mutation p.D121N 0.44 tolerated(0.06) benign(0.182) TCGA-D3-A51R-06 19 19105108 19105108 G A SUGP2 3'UTR 0.38 TCGA-D3-A51R-06 19 19377336 19377336 G A TM6SF2 Missense_Mutation p.P296L 0.37 tolerated(0.29) probably_damaging(1) TCGA-D3-A51R-06 19 19646388 19646388 C T YJEFN3 Silent p.G198G 0.50 TCGA-D3-A51R-06 19 22574412 22574412 C T ZNF98 Missense_Mutation p.G542E 0.33 tolerated(0.12) benign(0.002) TCGA-D3-A51R-06 19 22586296 22586296 C T ZNF98 Missense_Mutation p.D17N 0.47 deleterious(0) probably_damaging(0.994) TCGA-D3-A51R-06 19 22939793 22939793 C T ZNF99 3'Flank 0.44 TCGA-D3-A51R-06 19 23329076 23329076 C T ZNF730 Silent p.H410H 0.52 TCGA-D3-A51R-06 19 35842987 35842987 C T FFAR1 Missense_Mutation p.S178F 0.53 tolerated(0.4) benign(0.178) TCGA-D3-A51R-06 19 36211033 36211033 C T KMT2B Nonsense_Mutation p.Q262* 0.56 TCGA-D3-A51R-06 19 3653441 3653441 G A PIP5K1C Silent p.G256G 0.52 TCGA-D3-A51R-06 19 38912770 38912770 C T RASGRP4 Missense_Mutation p.G16E 0.50 tolerated(0.11) benign(0.021) TCGA-D3-A51R-06 19 38997496 38997496 C T RYR1 Missense_Mutation p.P2907L 0.34 benign(0.121) TCGA-D3-A51R-06 19 39306534 39306534 G A ECH1 Missense_Mutation p.S282F 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 19 39421447 39421447 C T SARS2 5'Flank 0.70 TCGA-D3-A51R-06 19 39874249 39874249 G C SAMD4B 3'UTR 0.45 TCGA-D3-A51R-06 19 41727078 41727078 G A AXL Silent p.T112T 0.51 TCGA-D3-A51R-06 19 42224866 42224866 C T CEACAM5 Missense_Mutation p.S599F 0.45 tolerated(0.28) probably_damaging(0.985) TCGA-D3-A51R-06 19 42231194 42231194 C T CEACAM5 Silent p.V689V 0.42 TCGA-D3-A51R-06 19 42794688 42794688 T C CIC Missense_Mutation p.F590L 0.36 possibly_damaging(0.827) TCGA-D3-A51R-06 19 43372150 43372150 A T PSG1 3'UTR 0.46 TCGA-D3-A51R-06 19 44610692 44610692 G A ZNF224 Missense_Mutation p.E127K 0.44 tolerated(0.13) benign(0.004) TCGA-D3-A51R-06 19 45864786 45864786 G A ERCC2 Silent p.A411A 0.44 TCGA-D3-A51R-06 19 49173971 49173971 G A NTN5 Silent p.I91I 0.39 TCGA-D3-A51R-06 19 49967944 49967944 C T ALDH16A1 Missense_Mutation p.S498F 0.43 tolerated(0.06) benign(0.006) TCGA-D3-A51R-06 19 50482441 50482441 G A VRK3 Silent p.P445P 0.47 TCGA-D3-A51R-06 19 51958829 51958829 C T SIGLEC8 Silent p.G298G 0.52 TCGA-D3-A51R-06 19 52468450 52468450 T C ZNF350 Missense_Mutation p.K419R 0.54 tolerated(0.47) possibly_damaging(0.704) TCGA-D3-A51R-06 19 54080427 54080427 C T ZNF331 Missense_Mutation p.H205Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A51R-06 19 54140071 54140071 C T DPRX Silent p.P135P 0.41 TCGA-D3-A51R-06 19 54646866 54646866 C T CNOT3 Missense_Mutation p.R13C 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 19 54756761 54756761 G A LILRB5 Missense_Mutation p.R483W 0.40 tolerated(0.09) possibly_damaging(0.877) TCGA-D3-A51R-06 19 54758782 54758782 C T LILRB5 Silent p.K357K 0.42 TCGA-D3-A51R-06 19 54802537 54802537 T G LILRA3 Missense_Mutation p.N302H 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A51R-06 19 55677431 55677431 C T DNAAF3 Missense_Mutation p.R76K 0.47 tolerated(0.73) benign(0.012) TCGA-D3-A51R-06 19 56485056 56485056 G A NLRP8 Missense_Mutation p.S858N 0.41 tolerated(0.31) benign(0.025) TCGA-D3-A51R-06 19 56515435 56515435 C T NLRP5 Missense_Mutation p.S139L 0.42 tolerated(0.05) benign(0.101) TCGA-D3-A51R-06 19 56701916 56701916 T C ZSCAN5B Silent p.E256E 0.47 TCGA-D3-A51R-06 19 57654015 57654015 C T ZIM3 5'UTR 0.46 TCGA-D3-A51R-06 19 57955267 57955267 C T ZNF749 Missense_Mutation p.P251S 0.38 tolerated(0.4) possibly_damaging(0.857) TCGA-D3-A51R-06 19 57955268 57955268 C T ZNF749 Missense_Mutation p.P251L 0.38 tolerated(0.77) possibly_damaging(0.908) TCGA-D3-A51R-06 19 58578642 58578642 C T ZNF135 Missense_Mutation p.H288Y 0.43 deleterious(0) probably_damaging(0.987) TCGA-D3-A51R-06 19 58578650 58578650 G A ZNF135 Silent p.G290G 0.45 TCGA-D3-A51R-06 19 59061522 59061522 C T TRIM28 Silent p.P734P 0.41 TCGA-D3-A51R-06 19 6535057 6535057 C T TNFSF9 Missense_Mutation p.P249S 0.41 tolerated(0.1) possibly_damaging(0.79) TCGA-D3-A51R-06 19 9017438 9017438 C T MUC16 Missense_Mutation p.R12629K 0.41 possibly_damaging(0.471) TCGA-D3-A51R-06 19 9050196 9050196 G A MUC16 Silent p.L10479L 0.44 TCGA-D3-A51R-06 19 9085057 9085057 G A MUC16 Missense_Mutation p.S2253F 0.42 unknown(0) TCGA-D3-A51R-06 19 9225634 9225634 C T OR7G1 Missense_Mutation p.R269Q 0.38 tolerated(0.08) possibly_damaging(0.801) TCGA-D3-A51R-06 19 9967548 9967548 G A OLFM2 Missense_Mutation p.R208W 0.27 deleterious(0) probably_damaging(0.987) TCGA-D3-A51R-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.71 tolerated(0.06) benign(0.006) TCGA-D3-A51R-06 1 117311113 117311113 G A CD2 Missense_Mutation p.R255K 0.23 tolerated(0.12) benign(0.399) TCGA-D3-A51R-06 1 118629608 118629608 G A SPAG17 Silent p.L461L 0.24 TCGA-D3-A51R-06 1 11897454 11897454 C T CLCN6 Silent p.T731T 0.34 TCGA-D3-A51R-06 1 119469231 119469231 C T TBX15 Silent p.R35R 0.68 TCGA-D3-A51R-06 1 119936442 119936442 G A HAO2 Silent p.L345L 0.74 TCGA-D3-A51R-06 1 120301901 120301901 C T HMGCS2 Silent p.L230L 0.54 TCGA-D3-A51R-06 1 12854241 12854241 C T PRAMEF1 Silent p.L155L 0.11 TCGA-D3-A51R-06 1 147096103 147096103 G A BCL9 Silent p.G1208G 0.35 TCGA-D3-A51R-06 1 147120147 147120147 A G ACP6 Silent p.F348F 0.30 TCGA-D3-A51R-06 1 151338846 151338846 G A SELENBP1 Missense_Mutation p.P250S 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A51R-06 1 151400735 151400735 G A POGZ Silent p.V241V 0.27 TCGA-D3-A51R-06 1 152058242 152058242 C T TCHHL1 Missense_Mutation p.G639E 0.55 tolerated(0.11) probably_damaging(0.957) TCGA-D3-A51R-06 1 152191366 152191366 G A HRNR Silent p.S913S 0.27 TCGA-D3-A51R-06 1 152279878 152279878 G A FLG Missense_Mutation p.T2495I 0.27 probably_damaging(0.93) TCGA-D3-A51R-06 1 152281357 152281357 C T FLG Missense_Mutation p.G2002E 0.19 probably_damaging(0.982) TCGA-D3-A51R-06 1 152328613 152328613 G A FLG2 Missense_Mutation p.S550L 0.29 unknown(0) TCGA-D3-A51R-06 1 152487912 152487912 C T CRCT1 Missense_Mutation p.S18F 0.53 unknown(0) TCGA-D3-A51R-06 1 152975921 152975921 C T SPRR3 Missense_Mutation p.P142L 0.60 tolerated(0.07) benign(0.112) TCGA-D3-A51R-06 1 153270417 153270417 G A PGLYRP3 3'UTR 0.43 TCGA-D3-A51R-06 1 153946425 153946425 G A CREB3L4 Missense_Mutation p.E358K 0.58 tolerated(0.71) benign(0.005) TCGA-D3-A51R-06 1 154461711 154461711 C T SHE Silent p.K280K 0.31 TCGA-D3-A51R-06 1 155150656 155150656 T A TRIM46 Missense_Mutation p.V363E 0.05 deleterious(0) benign(0.075) TCGA-D3-A51R-06 1 155239494 155239494 G A CLK2 Missense_Mutation p.R62C 0.27 tolerated(0.05) unknown(0) TCGA-D3-A51R-06 1 155257122 155257122 C T HCN3 Missense_Mutation p.R546C 0.32 deleterious(0) possibly_damaging(0.779) TCGA-D3-A51R-06 1 155449607 155449607 G A ASH1L Silent p.L1018L 0.25 TCGA-D3-A51R-06 1 155450436 155450436 A T ASH1L Missense_Mutation p.F742Y 0.54 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-D3-A51R-06 1 155583488 155583488 C T MSTO1 Missense_Mutation p.P477S 0.46 deleterious(0) probably_damaging(0.993) TCGA-D3-A51R-06 1 155884153 155884153 G A KIAA0907 Intron 0.73 TCGA-D3-A51R-06 1 156169797 156169797 C T SLC25A44 Silent p.L53L 0.60 TCGA-D3-A51R-06 1 156563765 156563765 C T APOA1BP Silent p.T252T 0.30 TCGA-D3-A51R-06 1 156703946 156703946 G A RRNAD1 Missense_Mutation p.G261E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 1 156811950 156811950 T C INSRR Silent p.A1117A 0.29 TCGA-D3-A51R-06 1 158299363 158299363 C T CD1B Missense_Mutation p.G228E 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 1 158436237 158436237 G A OR10K1 Missense_Mutation p.E296K 0.65 deleterious(0.02) possibly_damaging(0.69) TCGA-D3-A51R-06 1 158576419 158576419 C T OR10Z1 Missense_Mutation p.S64F 0.33 tolerated(0.28) possibly_damaging(0.534) TCGA-D3-A51R-06 1 159019358 159019358 C T IFI16 Intron 0.22 TCGA-D3-A51R-06 1 159163717 159163717 C T CADM3 Missense_Mutation p.S227L 0.57 tolerated(0.27) benign(0.065) TCGA-D3-A51R-06 1 160263246 160263246 G A COPA Missense_Mutation p.S904F 0.31 deleterious(0.04) benign(0.008) TCGA-D3-A51R-06 1 161127057 161127057 T A UFC1 Missense_Mutation p.C69S 0.25 deleterious(0.02) probably_damaging(0.969) TCGA-D3-A51R-06 1 161127075 161127075 C T UFC1 Missense_Mutation p.L75F 0.26 tolerated(0.19) benign(0.04) TCGA-D3-A51R-06 1 161496333 161496333 C T HSPA6 Missense_Mutation p.R629C 0.35 tolerated_low_confidence(0.07) benign(0.065) TCGA-D3-A51R-06 1 165182996 165182996 C T LMX1A Missense_Mutation p.G184E 0.29 tolerated(0.06) possibly_damaging(0.573) TCGA-D3-A51R-06 1 170007497 170007497 G C KIFAP3 Missense_Mutation p.R151G 0.60 deleterious(0) probably_damaging(0.962) TCGA-D3-A51R-06 1 173493150 173493150 G A SLC9C2 Silent p.I866I 0.25 TCGA-D3-A51R-06 1 173628409 173628409 C T ANKRD45 Missense_Mutation p.G50D 0.31 deleterious(0.05) benign(0.439) TCGA-D3-A51R-06 1 180165422 180165422 C T QSOX1 Silent p.F498F 0.55 TCGA-D3-A51R-06 1 184764939 184764939 C T FAM129A Silent p.E653E 0.26 TCGA-D3-A51R-06 1 185173954 185173954 G A SWT1 Missense_Mutation p.E598K 0.33 deleterious(0) probably_damaging(0.929) TCGA-D3-A51R-06 1 186647530 186647530 G A PTGS2 Missense_Mutation p.S107L 0.39 deleterious(0.03) benign(0.289) TCGA-D3-A51R-06 1 190423972 190423972 G A BRINP3 Silent p.L17L 0.17 TCGA-D3-A51R-06 1 192335167 192335167 C T RGS21 Silent p.F124F 0.48 TCGA-D3-A51R-06 1 19440498 19440498 G A UBR4 Missense_Mutation p.R3757W 0.41 probably_damaging(0.973) TCGA-D3-A51R-06 1 197032162 197032162 C T F13B Silent p.V30V 0.38 TCGA-D3-A51R-06 1 197128841 197128841 G A ZBTB41 Missense_Mutation p.S793L 0.30 deleterious(0.05) benign(0.008) TCGA-D3-A51R-06 1 198685931 198685931 G A PTPRC Missense_Mutation p.G471E 0.41 deleterious(0.01) probably_damaging(0.935) TCGA-D3-A51R-06 1 203134734 203134734 G A ADORA1 Silent p.E229E 0.66 TCGA-D3-A51R-06 1 204587886 204587886 G A LRRN2 Missense_Mutation p.P412L 0.33 tolerated(0.68) benign(0.193) TCGA-D3-A51R-06 1 205549926 205549926 G A MFSD4 Silent p.R189R 0.56 TCGA-D3-A51R-06 1 208216436 208216436 G A PLXNA2 Silent p.I1329I 0.37 TCGA-D3-A51R-06 1 209799137 209799137 G A LAMB3 Missense_Mutation p.S611L 0.32 tolerated(0.82) benign(0) TCGA-D3-A51R-06 1 212955717 212955717 G A NSL1 Missense_Mutation p.P166S 0.58 tolerated(0.26) benign(0.21) TCGA-D3-A51R-06 1 222920008 222920008 G A FAM177B Missense_Mutation p.E41K 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A51R-06 1 223395508 223395508 G A SUSD4 3'UTR 0.21 TCGA-D3-A51R-06 1 223408413 223408413 G A SUSD4 Intron 0.30 TCGA-D3-A51R-06 1 227843230 227843230 C T ZNF678 Missense_Mutation p.H427Y 0.24 deleterious(0) probably_damaging(0.963) TCGA-D3-A51R-06 1 228447329 228447329 G A OBSCN Silent p.G1663G 0.55 TCGA-D3-A51R-06 1 228547470 228547470 G A OBSCN Intron 0.25 TCGA-D3-A51R-06 1 228562329 228562329 C T OBSCN Silent p.A8470A 0.65 TCGA-D3-A51R-06 1 229654618 229654618 G A ABCB10 Missense_Mutation p.P652L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 1 229675332 229675332 G A ABCB10 Missense_Mutation p.L404F 0.34 tolerated(0.41) benign(0.06) TCGA-D3-A51R-06 1 229794915 229794915 C T URB2 Silent p.I1482I 0.59 TCGA-D3-A51R-06 1 22987870 22987870 G A C1QB Missense_Mutation p.M251I 0.41 tolerated_low_confidence(0.28) benign(0) TCGA-D3-A51R-06 1 231502105 231502105 C T EGLN1 3'UTR 0.43 TCGA-D3-A51R-06 1 233296141 233296141 G A PCNXL2 Silent p.A1135A 0.73 TCGA-D3-A51R-06 1 23688642 23688642 G A ZNF436 Silent p.T411T 0.43 TCGA-D3-A51R-06 1 240656684 240656684 G A GREM2 Missense_Mutation p.P31L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 1 247464422 247464422 G A ZNF496 Missense_Mutation p.S388F 0.27 deleterious(0.04) benign(0.444) TCGA-D3-A51R-06 1 248004462 248004462 G A OR11L1 Missense_Mutation p.A246V 0.24 tolerated(1) benign(0.038) TCGA-D3-A51R-06 1 248308966 248308966 G A OR2M5 Missense_Mutation p.E173K 0.29 tolerated(0.22) benign(0.119) TCGA-D3-A51R-06 1 248756558 248756558 G A OR2T10 Missense_Mutation p.S171F 0.51 deleterious(0.03) probably_damaging(0.983) TCGA-D3-A51R-06 1 26365626 26365626 C T SLC30A2 3'UTR 0.21 TCGA-D3-A51R-06 1 28661339 28661339 C T MED18 Missense_Mutation p.A162V 0.62 tolerated(0.14) benign(0.003) TCGA-D3-A51R-06 1 32280205 32280205 G A SPOCD1 Missense_Mutation p.P244S 0.40 tolerated(0.32) benign(0.025) TCGA-D3-A51R-06 1 32740386 32740386 G A LCK Missense_Mutation p.E52K 0.35 tolerated(0.37) benign(0.016) TCGA-D3-A51R-06 1 34008362 34008362 A G CSMD2 Missense_Mutation p.S2935P 0.41 tolerated(0.11) possibly_damaging(0.723) TCGA-D3-A51R-06 1 36644056 36644056 C T MAP7D1 Missense_Mutation p.P582L 0.68 probably_damaging(1) TCGA-D3-A51R-06 1 40717077 40717077 C T TMCO2 Silent p.F120F 0.28 TCGA-D3-A51R-06 1 41007379 41007379 C T ZNF684 Missense_Mutation p.P79S 0.29 tolerated(0.1) benign(0.147) TCGA-D3-A51R-06 1 47505164 47505164 G A CYP4X1 Missense_Mutation p.E345K 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 1 47603211 47603211 C T CYP4A22 Silent p.I18I 0.43 TCGA-D3-A51R-06 1 47609012 47609012 G A CYP4A22 Silent p.L194L 0.46 TCGA-D3-A51R-06 1 50666588 50666588 G A ELAVL4 Missense_Mutation p.G297E 0.48 deleterious(0.02) possibly_damaging(0.623) TCGA-D3-A51R-06 1 50666631 50666631 C T ELAVL4 Silent p.S311S 0.51 TCGA-D3-A51R-06 1 57169962 57169962 G A PRKAA2 Silent p.R369R 0.41 TCGA-D3-A51R-06 1 57185697 57185697 G A C1orf168 Silent p.F721F 0.16 TCGA-D3-A51R-06 1 57480638 57480638 C T DAB1 Silent p.Q454Q 0.53 TCGA-D3-A51R-06 1 59148172 59148172 G A MYSM1 Missense_Mutation p.H182Y 0.32 tolerated(0.43) benign(0.001) TCGA-D3-A51R-06 1 60373499 60373499 C T CYP2J2 Missense_Mutation p.R321Q 0.45 tolerated(0.1) possibly_damaging(0.811) TCGA-D3-A51R-06 1 6188925 6188925 C T CHD5 Missense_Mutation p.E1198K 0.41 tolerated(0.18) possibly_damaging(0.688) TCGA-D3-A51R-06 1 62733964 62733964 G A KANK4 Silent p.A742A 0.33 TCGA-D3-A51R-06 1 62733965 62733965 G A KANK4 Missense_Mutation p.A742V 0.34 tolerated(0.05) benign(0.027) TCGA-D3-A51R-06 1 64095186 64095186 A T PGM1 Missense_Mutation p.I131F 0.43 deleterious(0) probably_damaging(0.944) TCGA-D3-A51R-06 1 64624793 64624793 C T ROR1 Missense_Mutation p.S435L 0.48 tolerated(0.08) benign(0.01) TCGA-D3-A51R-06 1 6634780 6634780 G A TAS1R1 Silent p.V196V 0.45 TCGA-D3-A51R-06 1 67635255 67635255 T C IL23R Missense_Mutation p.C101R 0.38 deleterious(0) probably_damaging(0.919) TCGA-D3-A51R-06 1 7811305 7811305 G A CAMTA1 Missense_Mutation p.S1579N 0.39 tolerated(0.12) probably_damaging(0.996) TCGA-D3-A51R-06 1 9011756 9011756 C T CA6 Intron 0.32 TCGA-D3-A51R-06 1 97915750 97915750 G A DPYD Silent p.I590I 0.36 TCGA-D3-A51R-06 20 10025188 10025188 C T ANKEF1 Silent p.F231F 0.57 TCGA-D3-A51R-06 20 10620152 10620152 G A JAG1 Silent p.I1217I 0.34 TCGA-D3-A51R-06 20 17639518 17639518 G A RRBP1 Intron 0.30 TCGA-D3-A51R-06 20 1961356 1961356 C T PDYN Silent p.L126L 0.62 TCGA-D3-A51R-06 20 22563132 22563132 C T FOXA2 Missense_Mutation p.E250K 0.62 deleterious(0) possibly_damaging(0.835) TCGA-D3-A51R-06 20 2604920 2604920 G A TMC2 Silent p.G728G 0.29 TCGA-D3-A51R-06 20 29632694 29632694 G A FRG1B Missense_Mutation p.G170E 0.03 deleterious(0.01) possibly_damaging(0.658) TCGA-D3-A51R-06 20 30610479 30610479 C T CCM2L Missense_Mutation p.S317F 0.21 tolerated(0.27) possibly_damaging(0.813) TCGA-D3-A51R-06 20 30672231 30672231 C T HCK Silent p.P240P 0.39 TCGA-D3-A51R-06 20 31805270 31805270 C T BPIFA3 5'UTR 0.51 TCGA-D3-A51R-06 20 33517323 33517323 G A GSS Silent p.S394S 0.30 TCGA-D3-A51R-06 20 33874738 33874738 G A FAM83C Missense_Mutation p.S615L 0.37 tolerated_low_confidence(0.24) benign(0.004) TCGA-D3-A51R-06 20 34135216 34135216 C T ERGIC3 Missense_Mutation p.R141C 0.53 tolerated(0.1) benign(0.03) TCGA-D3-A51R-06 20 34806815 34806815 C T EPB41L1 Silent p.S762S 0.22 TCGA-D3-A51R-06 20 40735440 40735440 G A PTPRT Silent p.L1126L 0.21 TCGA-D3-A51R-06 20 42635399 42635399 G A TOX2 Silent p.Q126Q 0.31 TCGA-D3-A51R-06 20 43034711 43034711 A G HNF4A Silent p.S43S 0.28 TCGA-D3-A51R-06 20 43836998 43836998 G A SEMG1 Missense_Mutation p.E354K 0.65 tolerated(0.31) probably_damaging(0.996) TCGA-D3-A51R-06 20 43851397 43851397 C T SEMG2 Missense_Mutation p.S375L 0.24 tolerated(0.62) benign(0.307) TCGA-D3-A51R-06 20 43964457 43964457 G A SDC4 Missense_Mutation p.S55F 0.61 tolerated(0.7) benign(0.088) TCGA-D3-A51R-06 20 44531169 44531169 G A PLTP Silent p.P339P 0.30 TCGA-D3-A51R-06 20 44670039 44670039 G A SLC12A5 Missense_Mutation p.G332E 0.20 tolerated(0.5) benign(0.012) TCGA-D3-A51R-06 20 46292272 46292272 C T SULF2 Missense_Mutation p.D718N 0.59 tolerated(0.07) possibly_damaging(0.862) TCGA-D3-A51R-06 20 52779371 52779371 T G CYP24A1 Missense_Mutation p.K292T 0.23 tolerated(0.06) benign(0.279) TCGA-D3-A51R-06 20 57290244 57290244 C T NPEPL1 Silent p.F478F 0.56 TCGA-D3-A51R-06 20 5903583 5903583 G A CHGB Missense_Mutation p.E265K 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 20 5904031 5904031 G A CHGB Missense_Mutation p.G414E 0.52 tolerated(0.23) benign(0.017) TCGA-D3-A51R-06 20 5904318 5904318 C T CHGB Missense_Mutation p.H510Y 0.25 tolerated(1) benign(0.022) TCGA-D3-A51R-06 20 60448956 60448956 G A CDH4 Silent p.E350E 0.60 TCGA-D3-A51R-06 20 61162174 61162174 G A C20orf166 Intron 0.39 TCGA-D3-A51R-06 20 62195239 62195239 C T HELZ2 Missense_Mutation p.A1646T 0.36 tolerated(0.29) benign(0.003) TCGA-D3-A51R-06 20 9318684 9318684 C T PLCB4 Silent p.I65I 0.36 TCGA-D3-A51R-06 21 11047521 11047521 C T BAGE2 RNA 0.10 TCGA-D3-A51R-06 21 30961252 30961252 G A GRIK1 Silent p.F492F 0.33 TCGA-D3-A51R-06 21 33371051 33371051 C T HUNK Missense_Mutation p.R567C 0.28 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-D3-A51R-06 21 40191608 40191608 C T ETS2 Silent p.F331F 0.44 TCGA-D3-A51R-06 21 43412939 43412939 G A ZBTB21 Silent p.S422S 0.44 TCGA-D3-A51R-06 21 45860722 45860722 C T TRPM2 Silent p.I1440I 0.32 TCGA-D3-A51R-06 21 46047978 46047978 C T KRTAP10-9 3'UTR 0.34 TCGA-D3-A51R-06 21 47773898 47773898 C T PCNT Intron 0.50 TCGA-D3-A51R-06 22 21327630 21327630 G A AIFM3 Silent p.K22K 0.29 TCGA-D3-A51R-06 22 21348482 21348482 C T LZTR1 Silent p.I513I 0.27 TCGA-D3-A51R-06 22 23055644 23055644 G A IGLV3-21 Missense_Mutation p.D103N 0.26 deleterious(0.02) possibly_damaging(0.774) TCGA-D3-A51R-06 22 23237920 23237920 C T IGLL5 3'UTR 0.62 TCGA-D3-A51R-06 22 24095102 24095102 C T VPREB3 Silent p.A111A 0.37 TCGA-D3-A51R-06 22 24981921 24981921 G A FAM211B Missense_Mutation p.P294L 0.48 tolerated(0.54) benign(0.001) TCGA-D3-A51R-06 22 26747141 26747141 C T SEZ6L Missense_Mutation p.S844F 0.44 deleterious(0) probably_damaging(0.943) TCGA-D3-A51R-06 22 31621780 31621780 G A RNU6-1128P 5'Flank 0.29 TCGA-D3-A51R-06 22 32783973 32783973 A G RTCB 3'UTR 0.56 TCGA-D3-A51R-06 22 32831723 32831723 C T BPIFC Missense_Mutation p.G298R 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 22 35808549 35808549 C T MCM5 Silent p.F322F 0.46 TCGA-D3-A51R-06 22 39918195 39918195 C T ATF4 Missense_Mutation p.S215L 0.52 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A51R-06 22 41726102 41726102 C T ZC3H7B Missense_Mutation p.P174S 0.49 tolerated(0.34) probably_damaging(0.92) TCGA-D3-A51R-06 22 42523486 42523486 G A CYP2D6 Missense_Mutation p.S379F 0.31 tolerated(0.13) benign(0.237) TCGA-D3-A51R-06 22 42976321 42976321 G A POLDIP3 3'Flank 0.41 TCGA-D3-A51R-06 22 44107417 44107417 C T EFCAB6 Silent p.K323K 0.27 TCGA-D3-A51R-06 2 10263534 10263534 C T RRM2 Silent p.P125P 0.38 TCGA-D3-A51R-06 2 103067472 103067472 C T IL18RAP Missense_Mutation p.P459S 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 2 103068422 103068422 G A IL18RAP Silent p.V527V 0.51 TCGA-D3-A51R-06 2 103121867 103121867 C T SLC9A4 Missense_Mutation p.H379Y 0.42 deleterious(0) possibly_damaging(0.811) TCGA-D3-A51R-06 2 103121875 103121875 G A SLC9A4 Nonsense_Mutation p.W381* 0.43 TCGA-D3-A51R-06 2 1079275 1079275 G A SNTG2 Silent p.T48T 0.49 TCGA-D3-A51R-06 2 108478107 108478107 G A RGPD4 Missense_Mutation p.E706K 0.25 tolerated(0.07) possibly_damaging(0.636) TCGA-D3-A51R-06 2 110849256 110849256 G A MALL Missense_Mutation p.S66L 0.25 tolerated(0.14) benign(0.408) TCGA-D3-A51R-06 2 110962584 110962584 G A NPHP1 5'UTR 0.32 TCGA-D3-A51R-06 2 110962585 110962585 G T NPHP1 5'UTR 0.32 TCGA-D3-A51R-06 2 119739041 119739041 G A MARCO Missense_Mutation p.A275T 0.50 tolerated(0.39) probably_damaging(0.989) TCGA-D3-A51R-06 2 128262741 128262741 A G IWS1 Silent p.R246R 0.45 TCGA-D3-A51R-06 2 130785890 130785890 C T FAR2P1 RNA 0.53 TCGA-D3-A51R-06 2 131486813 131486813 A C GPR148 Missense_Mutation p.Q30P 0.38 tolerated(0.14) benign(0.002) TCGA-D3-A51R-06 2 133175110 133175110 G A GPR39 Silent p.L165L 0.49 TCGA-D3-A51R-06 2 137990578 137990578 G A THSD7B Silent p.E675E 0.27 TCGA-D3-A51R-06 2 141108564 141108564 G A LRP1B Silent p.I3898I 0.36 TCGA-D3-A51R-06 2 141201963 141201963 G A LRP1B Silent p.I3410I 0.49 TCGA-D3-A51R-06 2 143713811 143713811 C T KYNU Missense_Mutation p.L159F 0.42 tolerated(0.06) possibly_damaging(0.637) TCGA-D3-A51R-06 2 1437379 1437379 G A TPO Missense_Mutation p.D117N 0.36 deleterious(0.02) benign(0.103) TCGA-D3-A51R-06 2 14774273 14774273 C T FAM84A Missense_Mutation p.A57V 0.50 tolerated(0.32) benign(0.012) TCGA-D3-A51R-06 2 151326666 151326666 A G RND3 Silent p.F190F 0.38 TCGA-D3-A51R-06 2 15432684 15432684 C T NBAS Silent p.R1668R 0.22 TCGA-D3-A51R-06 2 158272366 158272366 C T CYTIP Silent p.R301R 0.57 TCGA-D3-A51R-06 2 16082311 16082311 C T MYCN Missense_Mutation p.S42L 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-D3-A51R-06 2 163292034 163292034 C T KCNH7 Missense_Mutation p.R543Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 2 165947814 165947814 G A SCN3A Missense_Mutation p.P1617S 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A51R-06 2 167141091 167141091 C T SCN9A Missense_Mutation p.G616R 0.46 tolerated(0.06) benign(0.12) TCGA-D3-A51R-06 2 168104494 168104494 G A XIRP2 Missense_Mutation p.D2198N 0.47 benign(0.003) TCGA-D3-A51R-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.46 benign(0.002) TCGA-D3-A51R-06 2 170014006 170014006 C T LRP2 Missense_Mutation p.G3965E 0.41 benign(0.32) TCGA-D3-A51R-06 2 174232405 174232405 T G CDCA7 3'UTR 0.46 TCGA-D3-A51R-06 2 179399759 179399759 C A TTN Missense_Mutation p.K33861N 0.37 TCGA-D3-A51R-06 2 179414373 179414373 G A TTN Silent p.F30692F 0.45 TCGA-D3-A51R-06 2 179434308 179434308 C T TTN Silent p.R25517R 0.50 TCGA-D3-A51R-06 2 179486229 179486229 G A TTN Nonsense_Mutation p.R15108* 0.49 TCGA-D3-A51R-06 2 179495906 179495906 C T TTN Silent p.K14623K 0.39 TCGA-D3-A51R-06 2 179545869 179545869 C T TTN Missense_Mutation p.E11093K 0.50 TCGA-D3-A51R-06 2 179584073 179584073 G A TTN Missense_Mutation p.S8015L 0.39 TCGA-D3-A51R-06 2 179599502 179599502 C T TTN Missense_Mutation p.G5050E 0.42 TCGA-D3-A51R-06 2 179614089 179614089 G A TTN Intron 0.41 TCGA-D3-A51R-06 2 179621260 179621260 G A TTN Missense_Mutation p.S3648F 0.46 TCGA-D3-A51R-06 2 180634389 180634389 G A ZNF385B Missense_Mutation p.L32F 0.33 deleterious(0.03) possibly_damaging(0.806) TCGA-D3-A51R-06 2 182413311 182413311 G A CERKL Missense_Mutation p.S391L 0.33 deleterious(0.02) benign(0.078) TCGA-D3-A51R-06 2 185801066 185801066 C T ZNF804A Nonsense_Mutation p.Q315* 0.38 TCGA-D3-A51R-06 2 185802431 185802431 C T ZNF804A Nonsense_Mutation p.R770* 0.36 TCGA-D3-A51R-06 2 188225440 188225440 C T CALCRL Silent p.L222L 0.41 TCGA-D3-A51R-06 2 189899663 189899663 G A COL5A2 Silent p.I1444I 0.41 TCGA-D3-A51R-06 2 191897741 191897741 G A STAT4 Missense_Mutation p.P663S 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A51R-06 2 1926203 1926203 C T MYT1L Silent p.K446K 0.48 TCGA-D3-A51R-06 2 196699017 196699017 C T DNAH7 Missense_Mutation p.E3005K 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 2 196729556 196729556 C T DNAH7 Missense_Mutation p.D2275N 0.47 tolerated(0.69) benign(0.05) TCGA-D3-A51R-06 2 198948485 198948485 C T PLCL1 Missense_Mutation p.P82S 0.41 tolerated(0.31) benign(0.028) TCGA-D3-A51R-06 2 201434611 201434611 C T SGOL2 Silent p.P233P 0.47 TCGA-D3-A51R-06 2 201507521 201507521 G A AOX1 Silent p.E948E 0.42 TCGA-D3-A51R-06 2 207615746 207615746 G A MDH1B Silent p.L322L 0.38 TCGA-D3-A51R-06 2 208992904 208992904 G A CRYGC 3'UTR 0.33 TCGA-D3-A51R-06 2 21225563 21225563 G A APOB Missense_Mutation p.S4244F 0.38 benign(0.015) TCGA-D3-A51R-06 2 212587206 212587206 G A ERBB4 Silent p.T265T 0.38 TCGA-D3-A51R-06 2 213872587 213872587 G A IKZF2 Missense_Mutation p.H360Y 0.51 tolerated(0.05) possibly_damaging(0.486) TCGA-D3-A51R-06 2 213872800 213872800 G A IKZF2 Missense_Mutation p.L289F 0.38 tolerated(0.72) benign(0.004) TCGA-D3-A51R-06 2 217148305 217148305 G A MARCH4 Missense_Mutation p.P222S 0.38 deleterious(0.02) possibly_damaging(0.727) TCGA-D3-A51R-06 2 218669074 218669074 G A TNS1 3'UTR 0.67 TCGA-D3-A51R-06 2 223554123 223554123 C T MOGAT1 Missense_Mutation p.S138L 0.40 deleterious(0.01) benign(0.006) TCGA-D3-A51R-06 2 228476136 228476136 G A C2orf83 Missense_Mutation p.H143Y 0.48 deleterious_low_confidence(0) benign(0.152) TCGA-D3-A51R-06 2 231379810 231379810 G A SP100 Intron 0.34 TCGA-D3-A51R-06 2 234652078 234652078 G A UGT1A10 Intron 0.33 TCGA-D3-A51R-06 2 234676975 234676975 G A UGT1A10 Missense_Mutation p.M395I 0.44 tolerated(0.28) probably_damaging(0.989) TCGA-D3-A51R-06 2 241537805 241537805 C T CAPN10 Silent p.F660F 0.42 TCGA-D3-A51R-06 2 242155653 242155653 G A ANO7 Missense_Mutation p.V712M 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A51R-06 2 242155654 242155654 G A ANO7 Splice_Site p.X712_splice 0.44 TCGA-D3-A51R-06 2 26203600 26203600 T A KIF3C Missense_Mutation p.K396M 0.41 possibly_damaging(0.789) TCGA-D3-A51R-06 2 26534448 26534448 G A GPR113 Silent p.V716V 0.45 TCGA-D3-A51R-06 2 27457493 27457493 C T CAD Silent p.I1242I 0.52 TCGA-D3-A51R-06 2 27805005 27805005 C T C2orf16 Missense_Mutation p.P1856S 0.32 tolerated(0.32) unknown(0) TCGA-D3-A51R-06 2 27805006 27805006 C T C2orf16 Missense_Mutation p.P1856L 0.32 tolerated(0.23) unknown(0) TCGA-D3-A51R-06 2 32897411 32897411 G A TTC27 Missense_Mutation p.D338N 0.42 tolerated(0.05) benign(0.008) TCGA-D3-A51R-06 2 40397449 40397449 C T SLC8A1 Silent p.P670P 0.48 TCGA-D3-A51R-06 2 50765611 50765611 C T NRXN1 Silent p.V681V 0.39 TCGA-D3-A51R-06 2 50850753 50850753 C T NRXN1 Missense_Mutation p.G311E 0.61 deleterious(0.05) benign(0.103) TCGA-D3-A51R-06 2 51255022 51255022 G A NRXN1 Silent p.I130I 0.52 TCGA-D3-A51R-06 2 63826365 63826365 C T MDH1 Missense_Mutation p.S164F 0.52 deleterious(0) possibly_damaging(0.655) TCGA-D3-A51R-06 2 68622964 68622964 C T PLEK 3'UTR 0.41 TCGA-D3-A51R-06 2 70904013 70904013 C T ADD2 Missense_Mutation p.R503Q 0.39 deleterious(0) probably_damaging(0.961) TCGA-D3-A51R-06 2 72725603 72725603 C A EXOC6B Missense_Mutation p.K439N 0.80 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A51R-06 2 84517962 84517962 G A FUNDC2P2 RNA 0.45 TCGA-D3-A51R-06 2 84518042 84518042 C T FUNDC2P2 RNA 0.40 TCGA-D3-A51R-06 2 89091967 89091967 G A ANKRD36BP2 RNA 0.33 TCGA-D3-A51R-06 2 89475845 89475845 C T IGKV2-24 Silent p.G109G 0.36 TCGA-D3-A51R-06 2 97490892 97490892 C T CNNM3 Silent p.I441I 0.36 TCGA-D3-A51R-06 2 99013316 99013316 G A CNGA3 Silent p.G561G 0.35 TCGA-D3-A51R-06 3 102183031 102183031 G A ZPLD1 Missense_Mutation p.D249N 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 3 108541693 108541693 C T TRAT1 5'UTR 0.39 TCGA-D3-A51R-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A51R-06 3 108833269 108833269 G A MORC1 Silent p.F27F 0.33 TCGA-D3-A51R-06 3 111603275 111603275 C T PHLDB2 Silent p.S117S 0.38 TCGA-D3-A51R-06 3 111794329 111794329 C T TMPRSS7 Missense_Mutation p.H523Y 0.49 tolerated(1) benign(0.008) TCGA-D3-A51R-06 3 113114668 113114668 C T WDR52 Missense_Mutation p.D607N 0.32 tolerated(0.43) benign(0.056) TCGA-D3-A51R-06 3 113375679 113375679 G A KIAA2018 Missense_Mutation p.S1617L 0.48 benign(0.11) TCGA-D3-A51R-06 3 113724548 113724548 G A KIAA1407 Nonsense_Mutation p.Q559* 0.45 TCGA-D3-A51R-06 3 121649793 121649793 G A SLC15A2 Missense_Mutation p.G554R 0.55 deleterious(0.02) possibly_damaging(0.691) TCGA-D3-A51R-06 3 123983539 123983539 T G KALRN Splice_Site p.X150_splice 0.50 TCGA-D3-A51R-06 3 12458654 12458654 G A PPARG Splice_Site p.X424_splice 0.29 TCGA-D3-A51R-06 3 133475757 133475757 G A TF Silent p.K258K 0.44 TCGA-D3-A51R-06 3 1337436 1337436 G A CNTN6 Silent p.E202E 0.57 TCGA-D3-A51R-06 3 134851628 134851628 C T EPHB1 Missense_Mutation p.P345L 0.58 deleterious(0) probably_damaging(0.973) TCGA-D3-A51R-06 3 139346524 139346524 A T NMNAT3 5'UTR 0.50 TCGA-D3-A51R-06 3 139346525 139346525 G A NMNAT3 5'UTR 0.50 TCGA-D3-A51R-06 3 140396978 140396978 G A TRIM42 5'UTR 0.36 TCGA-D3-A51R-06 3 148458795 148458795 T G AGTR1 5'UTR 0.49 TCGA-D3-A51R-06 3 15480697 15480697 A G EAF1 3'UTR 0.52 TCGA-D3-A51R-06 3 164700823 164700823 G A SI Silent p.D1738D 0.54 TCGA-D3-A51R-06 3 168807854 168807854 C T MECOM Missense_Mutation p.G989E 0.31 tolerated(0.62) benign(0.005) TCGA-D3-A51R-06 3 168810844 168810844 C T MECOM Silent p.A899A 0.37 TCGA-D3-A51R-06 3 17084434 17084434 G A PLCL2 Silent p.Q903Q 0.44 TCGA-D3-A51R-06 3 178943785 178943785 C T PIK3CA Missense_Mutation p.R818C 0.27 deleterious(0) possibly_damaging(0.81) TCGA-D3-A51R-06 3 183667837 183667837 G A ABCC5 Silent p.I1007I 0.36 TCGA-D3-A51R-06 3 186257163 186257163 G A CRYGS Missense_Mutation p.S82F 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 3 186459884 186459884 G A KNG1 Missense_Mutation p.D567N 0.43 deleterious(0.01) benign(0.421) TCGA-D3-A51R-06 3 186572565 186572565 G A ADIPOQ 3'UTR 0.44 TCGA-D3-A51R-06 3 186760883 186760883 C T ST6GAL1 Missense_Mutation p.P131L 0.44 benign(0.009) TCGA-D3-A51R-06 3 186968051 186968051 G A MASP1 Missense_Mutation p.P360S 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51R-06 3 188956541 188956541 G A TPRG1 Missense_Mutation p.E108K 0.45 deleterious(0) probably_damaging(0.993) TCGA-D3-A51R-06 3 189608589 189608589 G A TP63 Missense_Mutation p.R555K 0.46 tolerated(0.94) probably_damaging(0.987) TCGA-D3-A51R-06 3 196083597 196083597 G A UBXN7 Missense_Mutation p.L477F 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 3 24185029 24185029 G A THRB Missense_Mutation p.A234V 0.45 tolerated(0.07) benign(0.017) TCGA-D3-A51R-06 3 36898705 36898705 G A TRANK1 Silent p.I792I 0.43 TCGA-D3-A51R-06 3 38065923 38065923 A G PLCD1 Translation_Start_Site p.M1? 0.43 deleterious(0) possibly_damaging(0.769) TCGA-D3-A51R-06 3 38167344 38167344 G A ACAA1 Silent p.F342F 0.38 TCGA-D3-A51R-06 3 38357838 38357838 C T SLC22A14 Missense_Mutation p.S519F 0.53 tolerated(0.08) benign(0.056) TCGA-D3-A51R-06 3 38565525 38565525 C T EXOG Missense_Mutation p.P260L 0.45 tolerated(0.16) benign(0.026) TCGA-D3-A51R-06 3 38645290 38645290 G A SCN5A Silent p.V601V 0.44 TCGA-D3-A51R-06 3 38647489 38647489 C T SCN5A Missense_Mutation p.E431K 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A51R-06 3 3887657 3887657 C T LRRN1 Silent p.F444F 0.47 TCGA-D3-A51R-06 3 39229250 39229250 G A XIRP1 Missense_Mutation p.H563Y 0.46 deleterious(0) probably_damaging(0.962) TCGA-D3-A51R-06 3 39374087 39374087 C T CCR8 Missense_Mutation p.P89S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 3 404910 404910 G A CHL1 Missense_Mutation p.E477K 0.32 deleterious(0.04) benign(0.087) TCGA-D3-A51R-06 3 42954791 42954791 C T ZNF662 Intron 0.40 TCGA-D3-A51R-06 3 50617356 50617356 C T HEMK1 Silent p.L284L 0.44 TCGA-D3-A51R-06 3 52020621 52020621 G A ACY1 Missense_Mutation p.G176D 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 3 52536092 52536092 G A STAB1 Silent p.G134G 0.33 TCGA-D3-A51R-06 3 52851021 52851021 C T ITIH4 Missense_Mutation p.E784K 0.44 tolerated(0.24) benign(0.064) TCGA-D3-A51R-06 3 59908129 59908129 G A FHIT Silent p.V97V 0.52 TCGA-D3-A51R-06 3 68055810 68055810 G A FAM19A1 Nonsense_Mutation p.W14* 0.32 TCGA-D3-A51R-06 3 71804085 71804085 C T GPR27 Silent p.L295L 0.20 TCGA-D3-A51R-06 3 97167453 97167453 C T EPHA6 Silent p.A591A 0.51 TCGA-D3-A51R-06 3 9757672 9757672 C T CPNE9 Silent p.S279S 0.44 TCGA-D3-A51R-06 4 104510905 104510905 G A TACR3 Silent p.S444S 0.51 TCGA-D3-A51R-06 4 104510906 104510906 G A TACR3 Missense_Mutation p.S444F 0.51 deleterious(0.02) benign(0.01) TCGA-D3-A51R-06 4 106890098 106890098 G A NPNT Missense_Mutation p.G580E 0.44 deleterious(0) probably_damaging(0.968) TCGA-D3-A51R-06 4 107847066 107847066 C T DKK2 Missense_Mutation p.R88K 0.47 tolerated(0.42) benign(0.006) TCGA-D3-A51R-06 4 111398140 111398140 G A ENPEP Missense_Mutation p.M190I 0.42 tolerated(0.08) benign(0.005) TCGA-D3-A51R-06 4 115997465 115997465 G A NDST4 Missense_Mutation p.S243F 0.48 tolerated(0.33) benign(0.084) TCGA-D3-A51R-06 4 119952793 119952793 G A SYNPO2 Missense_Mutation p.G955R 0.33 tolerated(0.08) possibly_damaging(0.888) TCGA-D3-A51R-06 4 123332506 123332506 G A ADAD1 Missense_Mutation p.M326I 0.38 deleterious(0.05) benign(0.084) TCGA-D3-A51R-06 4 126370876 126370876 G A FAT4 Missense_Mutation p.G2902E 0.37 probably_damaging(0.973) TCGA-D3-A51R-06 4 129764135 129764135 C T JADE1 Missense_Mutation p.S27F 0.32 deleterious(0) probably_damaging(0.972) TCGA-D3-A51R-06 4 129913336 129913336 G A SCLT1 Silent p.L224L 0.31 TCGA-D3-A51R-06 4 138452019 138452019 C T PCDH18 Silent p.Q408Q 0.25 TCGA-D3-A51R-06 4 140811149 140811149 G A MAML3 Missense_Mutation p.L481F 0.53 benign(0.14) TCGA-D3-A51R-06 4 155698 155698 C G ZNF718 RNA 0.31 TCGA-D3-A51R-06 4 159554557 159554557 G A RXFP1 Silent p.L300L 0.32 TCGA-D3-A51R-06 4 162577553 162577553 C T FSTL5 Missense_Mutation p.G274E 0.37 deleterious(0) possibly_damaging(0.649) TCGA-D3-A51R-06 4 162577572 162577572 G A FSTL5 Silent p.L268L 0.38 TCGA-D3-A51R-06 4 164394581 164394581 C T TKTL2 Silent p.R102R 0.47 TCGA-D3-A51R-06 4 169194505 169194505 C T DDX60 Silent p.T833T 0.33 TCGA-D3-A51R-06 4 17517118 17517118 G A CLRN2 Missense_Mutation p.G77R 0.50 deleterious(0) probably_damaging(0.916) TCGA-D3-A51R-06 4 184629671 184629671 C T TRAPPC11 Missense_Mutation p.P1101S 0.47 deleterious(0.03) possibly_damaging(0.448) TCGA-D3-A51R-06 4 187201436 187201436 G T F11 Missense_Mutation p.V309F 0.04 tolerated(0.05) benign(0.025) TCGA-D3-A51R-06 4 189012483 189012483 C T TRIML2 3'UTR 0.44 TCGA-D3-A51R-06 4 39077585 39077585 G A KLHL5 Silent p.R174R 0.41 TCGA-D3-A51R-06 4 44177177 44177177 G A KCTD8 Missense_Mutation p.S351F 0.55 deleterious(0) probably_damaging(0.979) TCGA-D3-A51R-06 4 48495020 48495020 C A ZAR1 Silent p.I374I 0.52 TCGA-D3-A51R-06 4 52860910 52860910 G A LRRC66 Nonsense_Mutation p.Q760* 0.49 TCGA-D3-A51R-06 4 5960966 5960966 C T C4orf50 3'UTR 0.50 TCGA-D3-A51R-06 4 6695639 6695639 G A S100P 5'UTR 0.37 TCGA-D3-A51R-06 4 69519884 69519884 G A UGT2B15 Missense_Mutation p.P395L 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 4 70707808 70707808 C T SULT1E1 Nonsense_Mutation p.W263* 0.36 TCGA-D3-A51R-06 4 71275301 71275301 C T PROL1 Nonsense_Mutation p.Q86* 0.47 TCGA-D3-A51R-06 4 72423453 72423453 C T SLC4A4 Silent p.L930L 0.32 TCGA-D3-A51R-06 4 74308114 74308114 C T AFP Missense_Mutation p.A195V 0.26 tolerated(0.05) benign(0.133) TCGA-D3-A51R-06 4 7731380 7731380 C T SORCS2 Silent p.L1017L 0.60 TCGA-D3-A51R-06 4 78532262 78532262 T A CXCL13 3'UTR 0.56 TCGA-D3-A51R-06 4 88533290 88533290 G A DSPP Missense_Mutation p.E29K 0.28 possibly_damaging(0.65) TCGA-D3-A51R-06 4 94690554 94690554 G A GRID2 Missense_Mutation p.E852K 0.36 deleterious(0) probably_damaging(0.98) TCGA-D3-A51R-06 4 98865158 98865158 C T STPG2 Missense_Mutation p.E312K 0.29 tolerated(0.92) benign(0) TCGA-D3-A51R-06 5 11111034 11111034 C T CTNND2 Missense_Mutation p.G800D 0.42 deleterious(0.03) possibly_damaging(0.549) TCGA-D3-A51R-06 5 112176267 112176267 A T APC Missense_Mutation p.D1659V 0.48 probably_damaging(1) TCGA-D3-A51R-06 5 128302002 128302002 G A SLC27A6 Missense_Mutation p.D58N 0.56 deleterious(0.01) possibly_damaging(0.786) TCGA-D3-A51R-06 5 128956418 128956418 G A ADAMTS19 Missense_Mutation p.R523Q 0.42 tolerated(0.29) benign(0.006) TCGA-D3-A51R-06 5 128984510 128984510 G A ADAMTS19 Missense_Mutation p.D669N 0.43 tolerated(0.4) benign(0.01) TCGA-D3-A51R-06 5 129037264 129037264 G A ADAMTS19 Nonsense_Mutation p.W1040* 0.37 TCGA-D3-A51R-06 5 135583405 135583405 G A TRPC7 Missense_Mutation p.P533L 0.35 deleterious(0.01) possibly_damaging(0.716) TCGA-D3-A51R-06 5 13701415 13701415 C T DNAH5 Missense_Mutation p.G4490E 0.47 probably_damaging(0.982) TCGA-D3-A51R-06 5 13719166 13719166 G A DNAH5 Silent p.F4108F 0.67 TCGA-D3-A51R-06 5 13729620 13729620 C T DNAH5 Nonsense_Mutation p.W3937* 0.49 TCGA-D3-A51R-06 5 137593428 137593428 C T GFRA3 Missense_Mutation p.E229K 0.58 tolerated(0.06) benign(0.024) TCGA-D3-A51R-06 5 137593429 137593429 C T GFRA3 Silent p.G228G 0.59 TCGA-D3-A51R-06 5 13766133 13766133 C T DNAH5 Silent p.Q3351Q 0.43 TCGA-D3-A51R-06 5 13793676 13793676 G A DNAH5 Silent p.F2724F 0.35 TCGA-D3-A51R-06 5 13864594 13864594 G A DNAH5 Missense_Mutation p.T1503I 0.39 benign(0.021) TCGA-D3-A51R-06 5 13864596 13864596 G A DNAH5 Silent p.L1502L 0.37 TCGA-D3-A51R-06 5 13911527 13911527 C T DNAH5 Missense_Mutation p.E538K 0.48 possibly_damaging(0.635) TCGA-D3-A51R-06 5 140214456 140214456 G A PCDHA7 Missense_Mutation p.G163E 0.29 deleterious_low_confidence(0.02) benign(0.384) TCGA-D3-A51R-06 5 140223141 140223141 G A PCDHA8 Silent p.V745V 0.49 TCGA-D3-A51R-06 5 140228338 140228338 G A PCDHA9 Silent p.V86V 0.36 TCGA-D3-A51R-06 5 140236620 140236620 G A PCDHA10 Missense_Mutation p.M329I 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.902) TCGA-D3-A51R-06 5 140249868 140249868 T A PCDHA11 Missense_Mutation p.F394I 0.49 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-D3-A51R-06 5 140255502 140255502 G A PCDHA12 Missense_Mutation p.D149N 0.48 tolerated_low_confidence(0.1) benign(0.262) TCGA-D3-A51R-06 5 140481597 140481597 C T PCDHB3 Missense_Mutation p.S455F 0.39 deleterious_low_confidence(0.01) benign(0.015) TCGA-D3-A51R-06 5 140559872 140559872 G A PCDHB8 Missense_Mutation p.E753K 0.36 deleterious_low_confidence(0.02) benign(0.283) TCGA-D3-A51R-06 5 140750787 140750787 G T PCDHGB3 Nonsense_Mutation p.E276* 0.40 TCGA-D3-A51R-06 5 140764517 140764517 C T PCDHGA7 Missense_Mutation p.P684L 0.51 deleterious_low_confidence(0.03) benign(0.013) TCGA-D3-A51R-06 5 143853738 143853738 G A KCTD16 3'UTR 0.53 TCGA-D3-A51R-06 5 147016597 147016597 G A JAKMIP2 Silent p.L515L 0.44 TCGA-D3-A51R-06 5 149294570 149294570 C T PDE6A Missense_Mutation p.E312K 0.51 tolerated(0.06) probably_damaging(0.992) TCGA-D3-A51R-06 5 149602590 149602590 G A CAMK2A Silent p.V476V 0.44 TCGA-D3-A51R-06 5 149919801 149919801 C T NDST1 Missense_Mutation p.S575F 0.37 deleterious(0.03) benign(0.001) TCGA-D3-A51R-06 5 151772033 151772033 T G NMUR2 Missense_Mutation p.N323H 0.48 deleterious(0) probably_damaging(0.994) TCGA-D3-A51R-06 5 156816259 156816259 C T CYFIP2 Silent p.S1064S 0.44 TCGA-D3-A51R-06 5 157053483 157053483 G A SOX30 Silent p.N709N 0.41 TCGA-D3-A51R-06 5 168123384 168123384 C T SLIT3 Missense_Mutation p.D999N 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A51R-06 5 168176487 168176487 G A SLIT3 Silent p.F709F 0.47 TCGA-D3-A51R-06 5 171639123 171639123 A T UBTD2 Missense_Mutation p.L139Q 0.36 tolerated(0.6) benign(0.231) TCGA-D3-A51R-06 5 178541014 178541014 G A ADAMTS2 Missense_Mutation p.P1164S 0.48 deleterious_low_confidence(0.03) benign(0.109) TCGA-D3-A51R-06 5 180376918 180376918 G A BTNL8 Missense_Mutation p.D293N 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 5 180420075 180420075 C T BTNL3 Silent p.I104I 0.44 TCGA-D3-A51R-06 5 180582444 180582444 C T OR2V2 Missense_Mutation p.P168S 0.35 tolerated(0.23) possibly_damaging(0.513) TCGA-D3-A51R-06 5 1879856 1879856 C T IRX4 Silent p.K166K 0.34 TCGA-D3-A51R-06 5 33658413 33658413 G A ADAMTS12 Missense_Mutation p.R356C 0.50 deleterious(0) probably_damaging(0.967) TCGA-D3-A51R-06 5 35010110 35010110 C T AGXT2 Missense_Mutation p.D445N 0.45 tolerated(0.13) benign(0.076) TCGA-D3-A51R-06 5 35876260 35876260 C T IL7R Missense_Mutation p.S351F 0.56 tolerated(0.07) benign(0.178) TCGA-D3-A51R-06 5 39202662 39202662 C T FYB Missense_Mutation p.G144E 0.55 tolerated(0.14) possibly_damaging(0.907) TCGA-D3-A51R-06 5 42700097 42700097 G A GHR Nonsense_Mutation p.W204* 0.40 TCGA-D3-A51R-06 5 42718663 42718663 G A GHR Missense_Mutation p.E352K 0.45 deleterious(0) benign(0.142) TCGA-D3-A51R-06 5 50056163 50056163 C T PARP8 Silent p.S104S 0.27 TCGA-D3-A51R-06 5 55253054 55253054 C T IL6ST Missense_Mutation p.V347I 0.40 deleterious(0.04) benign(0.046) TCGA-D3-A51R-06 5 60455943 60455943 G A SMIM15 Missense_Mutation p.P19L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 5 61668356 61668356 G A KIF2A Missense_Mutation p.D580N 0.62 tolerated(0.18) benign(0.063) TCGA-D3-A51R-06 5 63894232 63894232 G A RGS7BP Missense_Mutation p.E218K 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A51R-06 5 79031559 79031559 G A CMYA5 Missense_Mutation p.G2324D 0.45 benign(0.003) TCGA-D3-A51R-06 5 79855306 79855306 T C ANKRD34B Missense_Mutation p.H178R 0.41 tolerated(0.33) benign(0.032) TCGA-D3-A51R-06 5 79855779 79855779 C T ANKRD34B Silent p.Q20Q 0.37 TCGA-D3-A51R-06 5 82817177 82817177 C T VCAN Missense_Mutation p.P1018S 0.57 tolerated(0.17) benign(0.338) TCGA-D3-A51R-06 5 90046367 90046367 G A GPR98 Splice_Site p.X3659_splice 0.38 TCGA-D3-A51R-06 5 9629554 9629554 C T TAS2R1 Silent p.L197L 0.39 TCGA-D3-A51R-06 6 105474321 105474321 G A LIN28B Missense_Mutation p.G116E 0.39 deleterious(0.01) possibly_damaging(0.8) TCGA-D3-A51R-06 6 107100110 107100110 C T QRSL1 Missense_Mutation p.S195L 0.39 deleterious(0.02) possibly_damaging(0.449) TCGA-D3-A51R-06 6 117113846 117113846 C T GPRC6A Missense_Mutation p.G747E 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A51R-06 6 117647515 117647515 G A ROS1 Missense_Mutation p.S1810F 0.62 deleterious(0) probably_damaging(0.966) TCGA-D3-A51R-06 6 129637249 129637249 G A LAMA2 Missense_Mutation p.D1331N 0.50 tolerated(0.31) benign(0.168) TCGA-D3-A51R-06 6 133065543 133065543 C T VNN2 Missense_Mutation p.D487N 0.50 deleterious(0.05) probably_damaging(1) TCGA-D3-A51R-06 6 133767818 133767818 G A EYA4 Missense_Mutation p.G45D 0.58 tolerated_low_confidence(0.12) benign(0.182) TCGA-D3-A51R-06 6 135307286 135307286 G A HBS1L Silent p.L447L 0.50 TCGA-D3-A51R-06 6 136681884 136681884 C T MAP7 Missense_Mutation p.R607Q 0.46 deleterious(0) unknown(0) TCGA-D3-A51R-06 6 137015310 137015310 C T MAP3K5 Silent p.T407T 0.34 TCGA-D3-A51R-06 6 139186271 139186271 C T ECT2L Missense_Mutation p.P477L 0.50 tolerated(0.17) possibly_damaging(0.804) TCGA-D3-A51R-06 6 144507955 144507955 G A STX11 Missense_Mutation p.R64Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A51R-06 6 149721838 149721838 C T SUMO4 3'UTR 0.49 TCGA-D3-A51R-06 6 150005350 150005350 G A LATS1 Missense_Mutation p.P292L 0.44 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-D3-A51R-06 6 159653718 159653718 G A FNDC1 Missense_Mutation p.G725E 0.57 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A51R-06 6 160468850 160468850 C T IGF2R Silent p.F752F 0.52 TCGA-D3-A51R-06 6 160864668 160864668 C T SLC22A3 Silent p.F468F 0.56 TCGA-D3-A51R-06 6 161771200 161771200 G A PARK2 Silent p.L443L 0.30 TCGA-D3-A51R-06 6 167435937 167435937 C T FGFR1OP Missense_Mutation p.S207F 0.41 deleterious(0) benign(0.032) TCGA-D3-A51R-06 6 167721306 167721306 T G UNC93A Missense_Mutation p.L339R 0.44 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A51R-06 6 168440821 168440821 G A KIF25 Missense_Mutation p.V191M 0.23 deleterious(0) probably_damaging(0.967) TCGA-D3-A51R-06 6 27368264 27368264 G A ZNF391 Missense_Mutation p.E39K 0.44 tolerated(0.58) benign(0.102) TCGA-D3-A51R-06 6 29342338 29342338 G A OR12D3 Missense_Mutation p.H243Y 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 6 30889739 30889739 G T VARS2 Silent p.L621L 0.42 TCGA-D3-A51R-06 6 31431486 31431486 G A HCP5 RNA 0.46 TCGA-D3-A51R-06 6 31513937 31513937 C T ATP6V1G2 Silent p.V44V 0.28 TCGA-D3-A51R-06 6 32609331 32609331 C T HLA-DQA1 Silent p.T109T 0.94 TCGA-D3-A51R-06 6 32609762 32609762 C T HLA-DQA1 Silent p.V115V 0.61 TCGA-D3-A51R-06 6 35454473 35454473 C T TEAD3 5'UTR 0.48 TCGA-D3-A51R-06 6 38877315 38877315 C T DNAH8 Missense_Mutation p.R2962C 0.36 probably_damaging(0.999) TCGA-D3-A51R-06 6 39047471 39047471 C T GLP1R Missense_Mutation p.S392F 0.74 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 6 39162472 39162472 G A KCNK5 Silent p.F121F 0.42 TCGA-D3-A51R-06 6 39851789 39851789 C T DAAM2 Missense_Mutation p.R633W 0.53 deleterious(0.01) possibly_damaging(0.806) TCGA-D3-A51R-06 6 4069004 4069004 T C FAM217A Missense_Mutation p.I485V 0.52 tolerated(0.25) benign(0.058) TCGA-D3-A51R-06 6 41011740 41011740 C T TSPO2 Missense_Mutation p.P126L 0.50 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A51R-06 6 41655521 41655521 C T TFEB Missense_Mutation p.E233K 0.38 deleterious(0) probably_damaging(0.917) TCGA-D3-A51R-06 6 43170918 43170918 G A CUL9 Silent p.Q1275Q 0.40 TCGA-D3-A51R-06 6 46995453 46995453 C T GPR110 Silent p.K38K 0.37 TCGA-D3-A51R-06 6 53519023 53519023 C T KLHL31 Missense_Mutation p.E350K 0.40 tolerated(0.13) possibly_damaging(0.718) TCGA-D3-A51R-06 6 54212290 54212290 G A TINAG Missense_Mutation p.A292T 0.33 deleterious(0) probably_damaging(0.964) TCGA-D3-A51R-06 6 55128558 55128558 G A HCRTR2 Missense_Mutation p.A234T 0.55 tolerated(0.12) benign(0.315) TCGA-D3-A51R-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.36 deleterious(0) probably_damaging(0.992) TCGA-D3-A51R-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.53 deleterious(0.02) benign(0.201) TCGA-D3-A51R-06 6 56330936 56330936 G A DST Missense_Mutation p.R4920C 0.42 probably_damaging(0.999) TCGA-D3-A51R-06 6 56566761 56566761 G A DST Silent p.P82P 0.50 TCGA-D3-A51R-06 6 70049388 70049388 C A BAI3 Silent p.R1151R 0.44 TCGA-D3-A51R-06 6 70070851 70070851 G A BAI3 Missense_Mutation p.G1229E 0.41 tolerated(1) benign(0.051) TCGA-D3-A51R-06 6 79655836 79655836 A - PHIP Frame_Shift_Del p.R1505Efs*9 0.33 TCGA-D3-A51R-06 6 84904618 84904618 G A KIAA1009 Silent p.I337I 0.47 TCGA-D3-A51R-06 6 87969007 87969007 C T ZNF292 Missense_Mutation p.S1887F 0.24 deleterious(0) possibly_damaging(0.463) TCGA-D3-A51R-06 6 90604852 90604852 C T GJA10 Missense_Mutation p.S222F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 6 90661507 90661507 G A BACH2 Silent p.I106I 0.56 TCGA-D3-A51R-06 6 97053779 97053779 T C FHL5 Silent p.G112G 0.50 TCGA-D3-A51R-06 7 100684371 100684371 C T MUC17 Missense_Mutation p.T3225I 0.48 probably_damaging(0.911) TCGA-D3-A51R-06 7 100685177 100685177 C T MUC17 Missense_Mutation p.P3494S 0.46 benign(0) TCGA-D3-A51R-06 7 100685178 100685178 C T MUC17 Missense_Mutation p.P3494L 0.45 benign(0.001) TCGA-D3-A51R-06 7 100691270 100691270 G A MUC17 Missense_Mutation p.G4137R 0.42 unknown(0) TCGA-D3-A51R-06 7 103143482 103143482 G A RELN Missense_Mutation p.P2824S 0.31 tolerated(0.2) benign(0.206) TCGA-D3-A51R-06 7 107834554 107834554 G A NRCAM Silent p.S564S 0.49 TCGA-D3-A51R-06 7 113518198 113518198 C T PPP1R3A Silent p.V983V 0.43 TCGA-D3-A51R-06 7 113518280 113518280 G A PPP1R3A Missense_Mutation p.S956L 0.43 tolerated(0.31) benign(0.001) TCGA-D3-A51R-06 7 116380980 116380980 C T MET Silent p.P534P 0.44 TCGA-D3-A51R-06 7 120386063 120386063 G A KCND2 Missense_Mutation p.R566K 0.44 tolerated_low_confidence(0.62) benign(0.002) TCGA-D3-A51R-06 7 121985724 121985724 C T CADPS2 Missense_Mutation p.M1172I 0.49 tolerated(0.19) benign(0.007) TCGA-D3-A51R-06 7 128034605 128034605 C T IMPDH1 Silent p.Q533Q 0.36 TCGA-D3-A51R-06 7 131844264 131844264 G A PLXNA4 Missense_Mutation p.S1543F 0.22 deleterious(0) probably_damaging(0.99) TCGA-D3-A51R-06 7 137776624 137776624 C T AKR1D1 Silent p.A124A 0.46 TCGA-D3-A51R-06 7 138333805 138333805 G A SVOPL Silent p.L204L 0.44 TCGA-D3-A51R-06 7 138602911 138602911 G A KIAA1549 Silent p.S487S 0.29 TCGA-D3-A51R-06 7 139724423 139724423 G A PARP12 Silent p.S681S 0.37 TCGA-D3-A51R-06 7 141619460 141619460 C T OR9A4 Missense_Mutation p.P262L 0.54 deleterious(0.02) probably_damaging(1) TCGA-D3-A51R-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.52 TCGA-D3-A51R-06 7 141795408 141795408 C T MGAM Missense_Mutation p.S1605F 0.53 deleterious(0) benign(0.374) TCGA-D3-A51R-06 7 142143833 142143833 G A TRBV6-7 Nonsense_Mutation p.R55* 0.47 TCGA-D3-A51R-06 7 142564680 142564680 C T EPHB6 Missense_Mutation p.S535F 0.40 tolerated(0.26) benign(0.139) TCGA-D3-A51R-06 7 143018827 143018827 G A CLCN1 Missense_Mutation p.M194I 0.51 deleterious(0) benign(0.078) TCGA-D3-A51R-06 7 148769369 148769369 G A ZNF786 Silent p.I165I 0.53 TCGA-D3-A51R-06 7 149430368 149430368 C T KRBA1 Silent p.P774P 0.49 TCGA-D3-A51R-06 7 149430369 149430369 C T KRBA1 Missense_Mutation p.P775S 0.49 tolerated(0.41) probably_damaging(0.986) TCGA-D3-A51R-06 7 149558190 149558190 C T ZNF862 Silent p.F647F 0.61 TCGA-D3-A51R-06 7 150174219 150174219 G A GIMAP8 Missense_Mutation p.G450E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 7 150174220 150174220 G A GIMAP8 Silent p.G450G 0.39 TCGA-D3-A51R-06 7 150499314 150499314 C T TMEM176A Silent p.I62I 0.37 TCGA-D3-A51R-06 7 150905163 150905163 C T ABCF2 Silent p.R633R 0.43 TCGA-D3-A51R-06 7 1516462 1516462 G A INTS1 Silent p.I1677I 0.41 TCGA-D3-A51R-06 7 16734623 16734623 C T BZW2 Silent p.I272I 0.59 TCGA-D3-A51R-06 7 21516879 21516879 C T SP4 Nonsense_Mutation p.R621* 0.52 TCGA-D3-A51R-06 7 23340497 23340497 C T MALSU1 Missense_Mutation p.S99L 0.45 deleterious(0) probably_damaging(0.983) TCGA-D3-A51R-06 7 25182349 25182349 A G C7orf31 Missense_Mutation p.W257R 0.48 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A51R-06 7 2985562 2985562 C T CARD11 Silent p.K83K 0.41 TCGA-D3-A51R-06 7 31018774 31018774 C T GHRHR Missense_Mutation p.P396L 0.36 tolerated(0.76) benign(0.014) TCGA-D3-A51R-06 7 38857459 38857459 G A VPS41 Silent p.F136F 0.51 TCGA-D3-A51R-06 7 39379418 39379418 C T POU6F2 Missense_Mutation p.P230L 0.50 tolerated_low_confidence(0.14) unknown(0) TCGA-D3-A51R-06 7 42088185 42088185 G A GLI3 Missense_Mutation p.P195L 0.41 deleterious(0) possibly_damaging(0.543) TCGA-D3-A51R-06 7 45724608 45724608 C T ADCY1 Missense_Mutation p.R672C 0.47 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A51R-06 7 53104213 53104213 C T POM121L12 Silent p.F283F 0.50 TCGA-D3-A51R-06 7 55270325 55270325 G A EGFR Intron 0.48 TCGA-D3-A51R-06 7 57529305 57529305 T C ZNF716 Missense_Mutation p.Y380H 0.49 deleterious(0.03) probably_damaging(0.967) TCGA-D3-A51R-06 7 635807 635807 C T PRKAR1B Silent p.R228R 0.34 TCGA-D3-A51R-06 7 6426900 6426900 A T RAC1 Missense_Mutation p.E31D 0.39 tolerated(0.06) benign(0.132) TCGA-D3-A51R-06 7 64452108 64452108 A G ERV3-1 Missense_Mutation p.W433R 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A51R-06 7 76054489 76054489 G A ZP3 Missense_Mutation p.D70N 0.42 deleterious(0) possibly_damaging(0.876) TCGA-D3-A51R-06 7 82584643 82584643 T A PCLO Nonsense_Mutation p.K1876* 0.43 TCGA-D3-A51R-06 7 86415646 86415646 G A GRM3 Missense_Mutation p.D180N 0.46 deleterious(0.03) probably_damaging(1) TCGA-D3-A51R-06 7 86468737 86468737 C T GRM3 Missense_Mutation p.P636L 0.41 deleterious(0) probably_damaging(0.982) TCGA-D3-A51R-06 7 92734212 92734212 C T SAMD9 Missense_Mutation p.G400E 0.47 deleterious(0.02) probably_damaging(0.943) TCGA-D3-A51R-06 7 93516626 93516626 C T TFPI2 Missense_Mutation p.G193E 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A51R-06 7 95167013 95167013 C T ASB4 Missense_Mutation p.S408F 0.51 tolerated(0.05) benign(0.001) TCGA-D3-A51R-06 7 97822687 97822687 G T LMTK2 Silent p.S970S 0.45 TCGA-D3-A51R-06 7 98249158 98249158 C T NPTX2 Silent p.T210T 0.48 TCGA-D3-A51R-06 8 100887879 100887879 G A VPS13B Silent p.R4018R 0.45 TCGA-D3-A51R-06 8 102381320 102381320 A G NACAP1 RNA 0.46 TCGA-D3-A51R-06 8 104388009 104388009 G A CTHRC1 Missense_Mutation p.R65Q 0.39 tolerated(0.21) probably_damaging(0.922) TCGA-D3-A51R-06 8 105361184 105361184 C T DCSTAMP Missense_Mutation p.S135F 0.34 deleterious(0.02) possibly_damaging(0.634) TCGA-D3-A51R-06 8 10555261 10555261 G A C8orf74 Missense_Mutation p.D132N 0.43 deleterious(0.02) possibly_damaging(0.888) TCGA-D3-A51R-06 8 108296932 108296932 C T ANGPT1 Missense_Mutation p.G395R 0.46 deleterious(0) probably_damaging(0.971) TCGA-D3-A51R-06 8 108334225 108334225 T C ANGPT1 Missense_Mutation p.Q236R 0.31 tolerated(0.1) benign(0.004) TCGA-D3-A51R-06 8 108970443 108970443 G A RSPO2 Missense_Mutation p.R161C 0.36 deleterious(0) possibly_damaging(0.785) TCGA-D3-A51R-06 8 110509279 110509279 T A PKHD1L1 Missense_Mutation p.Y3487N 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A51R-06 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.38 TCGA-D3-A51R-06 8 113363430 113363430 C T CSMD3 Nonsense_Mutation p.W2100* 0.38 TCGA-D3-A51R-06 8 11407739 11407739 C T BLK Missense_Mutation p.S147F 0.45 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A51R-06 8 119945352 119945352 C T TNFRSF11B Missense_Mutation p.S73N 0.54 tolerated(0.42) benign(0.063) TCGA-D3-A51R-06 8 125072945 125072945 G A FER1L6 Missense_Mutation p.E1048K 0.40 deleterious(0) possibly_damaging(0.901) TCGA-D3-A51R-06 8 139155299 139155299 G A FAM135B Silent p.I1198I 0.36 TCGA-D3-A51R-06 8 139164175 139164175 G A FAM135B Missense_Mutation p.P848L 0.46 tolerated_low_confidence(0.15) benign(0.004) TCGA-D3-A51R-06 8 139165439 139165439 G A FAM135B Missense_Mutation p.P427S 0.25 tolerated(0.12) benign(0.04) TCGA-D3-A51R-06 8 14022147 14022147 C A SGCZ Silent p.V163V 0.18 TCGA-D3-A51R-06 8 144776017 144776017 C T ZNF707 Missense_Mutation p.P145S 0.40 tolerated(0.66) benign(0.002) TCGA-D3-A51R-06 8 144776018 144776018 C T ZNF707 Missense_Mutation p.P145L 0.40 tolerated(0.35) benign(0) TCGA-D3-A51R-06 8 145659103 145659103 C A TONSL Missense_Mutation p.D1143Y 0.27 deleterious(0) possibly_damaging(0.905) TCGA-D3-A51R-06 8 15998416 15998416 G A MSR1 Intron 0.36 TCGA-D3-A51R-06 8 16853181 16853181 C T FGF20 Missense_Mutation p.G125R 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 8 24298548 24298548 G A ADAM7 5'UTR 0.32 TCGA-D3-A51R-06 8 24344700 24344700 G A ADAM7 Missense_Mutation p.D321N 0.58 deleterious(0) probably_damaging(0.975) TCGA-D3-A51R-06 8 3263620 3263620 C T CSMD1 Missense_Mutation p.G732E 0.45 probably_damaging(1) TCGA-D3-A51R-06 8 41519035 41519035 C T ANK1 Intron 0.41 TCGA-D3-A51R-06 8 48769844 48769844 G C PRKDC Missense_Mutation p.A2160G 0.48 probably_damaging(0.999) TCGA-D3-A51R-06 8 52320800 52320800 G A PXDNL Silent p.S1128S 0.52 TCGA-D3-A51R-06 8 53073958 53073958 C T ST18 Missense_Mutation p.R524Q 0.41 tolerated(0.72) benign(0.007) TCGA-D3-A51R-06 8 55371723 55371723 G A SOX17 Missense_Mutation p.R138Q 0.53 deleterious(0) probably_damaging(0.921) TCGA-D3-A51R-06 8 55371725 55371725 C G SOX17 Missense_Mutation p.P139A 0.60 deleterious(0.05) probably_damaging(0.971) TCGA-D3-A51R-06 8 56863296 56863296 G A LYN Missense_Mutation p.G147E 0.25 tolerated(0.14) benign(0.184) TCGA-D3-A51R-06 8 57218211 57218211 C T SDR16C5 Missense_Mutation p.E261K 0.48 deleterious(0.02) possibly_damaging(0.521) TCGA-D3-A51R-06 8 59764311 59764311 C T TOX Missense_Mutation p.M155I 0.43 tolerated(0.34) benign(0) TCGA-D3-A51R-06 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.51 tolerated(0.51) benign(0.108) TCGA-D3-A51R-06 8 68956773 68956773 T G PREX2 Silent p.R297R 0.32 TCGA-D3-A51R-06 8 69028022 69028022 G A PREX2 Missense_Mutation p.E1061K 0.45 tolerated(0.05) benign(0.254) TCGA-D3-A51R-06 8 71593255 71593255 G A XKR9 5'UTR 0.59 TCGA-D3-A51R-06 8 73848207 73848207 C T KCNB2 Missense_Mutation p.S206F 0.50 deleterious(0) probably_damaging(0.996) TCGA-D3-A51R-06 8 77764013 77764013 C G ZFHX4 Missense_Mutation p.T1619R 0.48 possibly_damaging(0.702) TCGA-D3-A51R-06 8 86393000 86393000 C T CA2 Silent p.I255I 0.42 TCGA-D3-A51R-06 8 88885802 88885802 G A DCAF4L2 Missense_Mutation p.A133V 0.47 tolerated(0.07) benign(0.339) TCGA-D3-A51R-06 8 90782052 90782052 G A RIPK2 Missense_Mutation p.R179Q 0.46 tolerated(0.27) possibly_damaging(0.716) TCGA-D3-A51R-06 9 101797334 101797334 G A COL15A1 Silent p.G706G 0.95 TCGA-D3-A51R-06 9 101818677 101818677 C T COL15A1 Silent p.L1110L 0.98 TCGA-D3-A51R-06 9 101980593 101980593 C T ALG2 Missense_Mutation p.D292N 0.98 tolerated(0.55) benign(0.002) TCGA-D3-A51R-06 9 105767678 105767678 T G CYLC2 Missense_Mutation p.D255E 1.00 tolerated(0.31) unknown(0) TCGA-D3-A51R-06 9 107266586 107266586 C T OR13F1 Silent p.L15L 0.78 TCGA-D3-A51R-06 9 107457248 107457248 C T OR13D1 Silent p.I182I 0.89 TCGA-D3-A51R-06 9 107457336 107457336 G A OR13D1 Missense_Mutation p.E212K 0.89 deleterious(0) probably_damaging(0.995) TCGA-D3-A51R-06 9 112930840 112930840 A G PALM2-AKAP2 3'UTR 1.00 TCGA-D3-A51R-06 9 113220765 113220765 C T SVEP1 Missense_Mutation p.E1188K 1.00 benign(0.002) TCGA-D3-A51R-06 9 113233820 113233820 C T SVEP1 Missense_Mutation p.R941Q 0.94 probably_damaging(0.963) TCGA-D3-A51R-06 9 114695241 114695241 C T UGCG Silent p.R383R 0.92 TCGA-D3-A51R-06 9 115422315 115422315 C T KIAA1958 Missense_Mutation p.S706F 0.94 deleterious_low_confidence(0.01) benign(0.018) TCGA-D3-A51R-06 9 117826292 117826292 G A TNC Silent p.L1181L 0.92 TCGA-D3-A51R-06 9 118969732 118969732 C T PAPPA Intron 0.88 TCGA-D3-A51R-06 9 118982328 118982328 C T PAPPA Silent p.L677L 0.94 TCGA-D3-A51R-06 9 119976644 119976644 C T ASTN2 Silent p.E336E 0.96 TCGA-D3-A51R-06 9 121971176 121971176 G A BRINP1 Silent p.F322F 0.80 TCGA-D3-A51R-06 9 131671193 131671193 C T LRRC8A Missense_Mutation p.L584F 0.96 tolerated(0.2) probably_damaging(0.951) TCGA-D3-A51R-06 9 134477499 134477499 G A RAPGEF1 Missense_Mutation p.P649L 0.81 tolerated(0.1) benign(0.002) TCGA-D3-A51R-06 9 135771901 135771901 G C TSC1 Silent p.A1072A 0.83 TCGA-D3-A51R-06 9 136082624 136082624 C T OBP2B Missense_Mutation p.G126E 0.84 deleterious(0.02) possibly_damaging(0.887) TCGA-D3-A51R-06 9 15469323 15469323 C T PSIP1 Missense_Mutation p.D349N 0.93 deleterious(0) probably_damaging(0.996) TCGA-D3-A51R-06 9 21333565 21333565 T - KLHL9 Frame_Shift_Del p.M432* 0.46 TCGA-D3-A51R-06 9 34689785 34689785 G A CCL19 3'UTR 0.39 TCGA-D3-A51R-06 9 35108110 35108110 G A FAM214B Silent p.S54S 0.88 TCGA-D3-A51R-06 9 35710651 35710651 G A TLN1 Silent p.S1411S 0.93 TCGA-D3-A51R-06 9 80943070 80943070 C T PSAT1 Missense_Mutation p.L325F 0.85 deleterious(0.03) benign(0.079) TCGA-D3-A51R-06 9 84564747 84564747 G A RP11-383M4.6 Intron 0.82 TCGA-D3-A51R-06 9 93375783 93375783 C T DIRAS2 Silent p.G109G 0.90 TCGA-D3-A51R-06 9 93375784 93375784 C T DIRAS2 Missense_Mutation p.G109E 0.90 deleterious(0.02) possibly_damaging(0.549) TCGA-D3-A51R-06 X 10062315 10062315 C T WWC3 Silent p.I217I 1.00 TCGA-D3-A51R-06 X 102004791 102004791 C T BHLHB9 Nonsense_Mutation p.Q290* 0.91 TCGA-D3-A51R-06 X 111090631 111090631 T A TRPC5 Missense_Mutation p.M471L 0.86 tolerated(0.31) benign(0.05) TCGA-D3-A51R-06 X 117043960 117043960 G A KLHL13 Missense_Mutation p.P227S 0.86 tolerated(1) benign(0.007) TCGA-D3-A51R-06 X 12904202 12904202 C T TLR7 Missense_Mutation p.S192L 1.00 deleterious(0.01) possibly_damaging(0.721) TCGA-D3-A51R-06 X 140984958 140984958 C T MAGEC3 Nonsense_Mutation p.Q472* 0.91 TCGA-D3-A51R-06 X 140995902 140995902 C T MAGEC1 Silent p.F904F 0.91 TCGA-D3-A51R-06 X 151900668 151900668 G A MAGEA12 Silent p.L45L 0.87 TCGA-D3-A51R-06 X 151908847 151908847 G A CSAG1 Missense_Mutation p.R29K 0.94 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-D3-A51R-06 X 153220911 153220911 G A HCFC1 Missense_Mutation p.S980F 0.96 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D3-A51R-06 X 154176065 154176065 C T F8 Missense_Mutation p.G674E 0.94 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 X 15540668 15540668 G A BMX Missense_Mutation p.R237K 0.90 tolerated(0.86) benign(0.001) TCGA-D3-A51R-06 X 17165542 17165542 C T REPS2 Missense_Mutation p.H641Y 0.90 tolerated(0.06) benign(0.076) TCGA-D3-A51R-06 X 23398358 23398358 C T PTCHD1 Silent p.F334F 0.88 TCGA-D3-A51R-06 X 34148166 34148166 G A FAM47A Silent p.L744L 0.79 TCGA-D3-A51R-06 X 37027438 37027438 C T FAM47C Missense_Mutation p.R319C 0.97 tolerated(0.28) probably_damaging(0.988) TCGA-D3-A51R-06 X 49965595 49965595 C T AKAP4 5'UTR 0.96 TCGA-D3-A51R-06 X 53222222 53222222 G A KDM5C Missense_Mutation p.S1537L 1.00 tolerated_low_confidence(0.88) benign(0) TCGA-D3-A51R-06 X 54275254 54275254 G A WNK3 Missense_Mutation p.P1176L 0.97 deleterious(0.01) benign(0.342) TCGA-D3-A51R-06 X 55783668 55783668 C T RRAGB Nonsense_Mutation p.Q311* 0.89 TCGA-D3-A51R-06 X 63411348 63411348 C A AMER1 Nonsense_Mutation p.E607* 0.77 TCGA-D3-A51R-06 X 71427378 71427378 A G ERCC6L Silent p.H413H 0.95 TCGA-D3-A51R-06 X 71825180 71825180 C T PHKA1 Missense_Mutation p.R919Q 0.91 deleterious(0) probably_damaging(1) TCGA-D3-A51R-06 X 73042618 73042618 G A XIST RNA 1.00 TCGA-D3-A51R-06 X 73961840 73961840 G A KIAA2022 Missense_Mutation p.S851L 0.90 deleterious(0.03) benign(0.156) TCGA-D3-A51R-06 X 77254172 77254172 C T ATP7A Missense_Mutation p.R512W 0.94 deleterious(0) probably_damaging(0.954) TCGA-D3-A51R-06 X 77912607 77912607 G A ZCCHC5 Silent p.V437V 0.95 TCGA-D3-A51T-06 10 100152776 100152776 G A PYROXD2 Nonsense_Mutation p.Q284* 0.74 TCGA-D3-A51T-06 10 102799292 102799292 C T SFXN3 Missense_Mutation p.H310Y 0.68 deleterious(0.01) benign(0.011) TCGA-D3-A51T-06 10 103898670 103898670 C A PPRC1 Missense_Mutation p.P175Q 0.67 deleterious(0) possibly_damaging(0.674) TCGA-D3-A51T-06 10 105906093 105906093 T C WDR96 Silent p.E1261E 0.58 TCGA-D3-A51T-06 10 107015508 107015508 G A SORCS3 Missense_Mutation p.E1096K 0.52 tolerated(0.3) possibly_damaging(0.858) TCGA-D3-A51T-06 10 114043548 114043548 C T TECTB Missense_Mutation p.S19L 0.82 deleterious(0.01) benign(0.183) TCGA-D3-A51T-06 10 114136198 114136198 C T ACSL5 Missense_Mutation p.P44L 0.61 deleterious_low_confidence(0.01) benign(0.088) TCGA-D3-A51T-06 10 115411593 115411593 C T NRAP Missense_Mutation p.R215Q 0.55 tolerated(0.73) possibly_damaging(0.756) TCGA-D3-A51T-06 10 116075333 116075333 C T AFAP1L2 Missense_Mutation p.D200N 0.53 deleterious(0) possibly_damaging(0.805) TCGA-D3-A51T-06 10 116075334 116075334 C T AFAP1L2 Silent p.K199K 0.53 TCGA-D3-A51T-06 10 117075099 117075099 C T ATRNL1 Missense_Mutation p.P964S 0.52 tolerated(0.06) probably_damaging(0.958) TCGA-D3-A51T-06 10 11997355 11997355 G A UPF2 Missense_Mutation p.S909F 0.65 tolerated(0.07) benign(0.057) TCGA-D3-A51T-06 10 123847037 123847037 C T TACC2 Silent p.A1674A 0.76 TCGA-D3-A51T-06 10 124345875 124345875 G A DMBT1 Missense_Mutation p.E587K 0.37 deleterious(0.04) unknown(0) TCGA-D3-A51T-06 10 124392724 124392724 G A DMBT1 Missense_Mutation p.G2010S 0.61 deleterious(0.04) probably_damaging(0.977) TCGA-D3-A51T-06 10 15120536 15120536 C T ACBD7 Missense_Mutation p.G87E 0.70 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 10 15686188 15686188 C T ITGA8 Missense_Mutation p.D414N 0.57 tolerated(0.12) benign(0.062) TCGA-D3-A51T-06 10 24809053 24809053 G A KIAA1217 Missense_Mutation p.E727K 0.69 deleterious(0.03) possibly_damaging(0.629) TCGA-D3-A51T-06 10 24873720 24873720 G T ARHGAP21 Nonsense_Mutation p.S1833* 0.72 TCGA-D3-A51T-06 10 26792132 26792132 G A APBB1IP Missense_Mutation p.E154K 0.78 tolerated(0.27) benign(0.001) TCGA-D3-A51T-06 10 27688144 27688144 G A PTCHD3 Silent p.I461I 0.60 TCGA-D3-A51T-06 10 28270426 28270426 G A ARMC4 Missense_Mutation p.S302L 0.63 deleterious(0.01) benign(0.242) TCGA-D3-A51T-06 10 430503 430503 T A DIP2C Missense_Mutation p.K580M 0.63 tolerated(0.37) benign(0.286) TCGA-D3-A51T-06 10 45477989 45477989 C T RASSF4 Silent p.I53I 0.67 TCGA-D3-A51T-06 10 45920565 45920565 G A ALOX5 Silent p.L273L 0.67 TCGA-D3-A51T-06 10 48388901 48388901 C T RBP3 Silent p.Q659Q 0.60 TCGA-D3-A51T-06 10 48438736 48438736 G A GDF10 5'UTR 0.45 TCGA-D3-A51T-06 10 50944443 50944443 T A OGDHL Missense_Mutation p.Q905L 0.71 tolerated(0.19) benign(0.001) TCGA-D3-A51T-06 10 5203839 5203839 G A AKR1CL1 Missense_Mutation p.H120Y 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 10 55568842 55568842 C T PCDH15 Silent p.R590R 0.69 TCGA-D3-A51T-06 10 55583112 55583112 G A PCDH15 Silent p.F1460F 0.75 TCGA-D3-A51T-06 10 55782690 55782690 C T PCDH15 Missense_Mutation p.E830K 0.68 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 10 55943312 55943312 G A PCDH15 Silent p.I494I 0.70 TCGA-D3-A51T-06 10 61833786 61833786 C T ANK3 Missense_Mutation p.D2285N 0.75 probably_damaging(0.977) TCGA-D3-A51T-06 10 6527123 6527123 C T PRKCQ Missense_Mutation p.G337R 0.64 tolerated(0.1) benign(0.14) TCGA-D3-A51T-06 10 71634912 71634912 G A COL13A1 Missense_Mutation p.G143E 0.78 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 10 71654431 71654431 G A COL13A1 Missense_Mutation p.G202R 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 10 73511467 73511467 G A C10orf54 Silent p.L286L 0.69 TCGA-D3-A51T-06 10 73567159 73567159 C T CDH23 Silent p.I528I 0.54 TCGA-D3-A51T-06 10 79742503 79742503 G A POLR3A Missense_Mutation p.H1168Y 0.56 tolerated(1) benign(0.003) TCGA-D3-A51T-06 10 89653788 89653788 A C PTEN Missense_Mutation p.Y29S 0.71 tolerated(0.32) benign(0.053) TCGA-D3-A51T-06 10 90427359 90427359 G A LIPF Missense_Mutation p.E57K 0.80 deleterious(0.01) possibly_damaging(0.675) TCGA-D3-A51T-06 10 96827404 96827404 C T CYP2C8 Missense_Mutation p.M71I 0.61 tolerated(0.39) benign(0.041) TCGA-D3-A51T-06 10 98064175 98064175 C T DNTT 5'UTR 0.64 TCGA-D3-A51T-06 11 10615110 10615110 G A MRVI1 Missense_Mutation p.P702S 0.28 tolerated(0.11) possibly_damaging(0.868) TCGA-D3-A51T-06 11 108202232 108202232 G A ATM Missense_Mutation p.R2526K 0.27 deleterious(0) probably_damaging(0.91) TCGA-D3-A51T-06 11 10828926 10828926 T A EIF4G2 Intron 0.43 TCGA-D3-A51T-06 11 111156556 111156556 C T C11orf53 Missense_Mutation p.S163L 0.31 deleterious(0.03) possibly_damaging(0.639) TCGA-D3-A51T-06 11 118257192 118257192 C T UBE4A Nonsense_Mutation p.R825* 0.37 TCGA-D3-A51T-06 11 118344383 118344383 C T KMT2A Missense_Mutation p.P837S 0.42 probably_damaging(0.986) TCGA-D3-A51T-06 11 118362005 118362005 C T KMT2A Silent p.S1597S 0.35 TCGA-D3-A51T-06 11 118772714 118772714 G A BCL9L Silent p.L580L 0.36 TCGA-D3-A51T-06 11 118850182 118850182 G A FOXR1 Missense_Mutation p.E139K 0.35 deleterious(0.04) benign(0.055) TCGA-D3-A51T-06 11 121008416 121008416 C T TECTA Silent p.P1076P 0.24 TCGA-D3-A51T-06 11 121016635 121016635 C T TECTA Silent p.P1305P 0.46 TCGA-D3-A51T-06 11 121059869 121059869 G A TECTA Silent p.R2081R 0.32 TCGA-D3-A51T-06 11 121348903 121348903 G A SORL1 Missense_Mutation p.S160N 0.43 tolerated(0.14) benign(0.002) TCGA-D3-A51T-06 11 121383805 121383805 C T SORL1 Missense_Mutation p.P345S 0.49 deleterious(0.02) possibly_damaging(0.897) TCGA-D3-A51T-06 11 12315498 12315498 G A MICALCL Missense_Mutation p.E174K 0.50 tolerated(0.57) benign(0.001) TCGA-D3-A51T-06 11 123847857 123847857 A T OR10S1 Missense_Mutation p.L181H 0.33 deleterious(0.01) benign(0.017) TCGA-D3-A51T-06 11 123886617 123886617 C T OR10G4 Silent p.F112F 0.23 TCGA-D3-A51T-06 11 124121107 124121107 C T OR8G1 Missense_Mutation p.R229C 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.888) TCGA-D3-A51T-06 11 124135368 124135368 C T OR8G5 Missense_Mutation p.L216F 0.31 deleterious(0.05) probably_damaging(0.987) TCGA-D3-A51T-06 11 124440111 124440111 C T OR8A1 Silent p.L49L 0.39 TCGA-D3-A51T-06 11 125476270 125476270 C T STT3A Silent p.G230G 0.47 TCGA-D3-A51T-06 11 126081542 126081542 G A FAM118B 5'UTR 0.49 TCGA-D3-A51T-06 11 128807489 128807489 G A TP53AIP1 Intron 0.31 TCGA-D3-A51T-06 11 129742840 129742840 G A NFRKB Missense_Mutation p.A926V 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.798) TCGA-D3-A51T-06 11 1605798 1605798 C T KRTAP5-1 Missense_Mutation p.G228R 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A51T-06 11 1643028 1643028 C T KRTAP5-4 Missense_Mutation p.G99E 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-D3-A51T-06 11 16838390 16838390 G A PLEKHA7 Missense_Mutation p.S608L 0.39 deleterious(0.01) benign(0.296) TCGA-D3-A51T-06 11 17097072 17097072 G A RPS13 Missense_Mutation p.L84F 0.42 deleterious(0) possibly_damaging(0.898) TCGA-D3-A51T-06 11 18050736 18050736 C T TPH1 Missense_Mutation p.E215K 0.40 deleterious(0.01) benign(0.38) TCGA-D3-A51T-06 11 18290760 18290760 G A SAA1 Missense_Mutation p.R37K 0.27 tolerated(0.07) benign(0.361) TCGA-D3-A51T-06 11 18956459 18956459 G A MRGPRX1 5'UTR 0.50 TCGA-D3-A51T-06 11 2186472 2186472 C T TH Missense_Mutation p.D473N 0.38 tolerated(0.15) benign(0.002) TCGA-D3-A51T-06 11 2186473 2186473 C T TH Silent p.K472K 0.36 TCGA-D3-A51T-06 11 2427956 2427956 G A TRPM5 Silent p.F1062F 0.25 TCGA-D3-A51T-06 11 26587134 26587134 G A MUC15 Missense_Mutation p.S118L 0.51 tolerated_low_confidence(1) benign(0) TCGA-D3-A51T-06 11 26681952 26681952 G A ANO3 Silent p.R969R 0.40 TCGA-D3-A51T-06 11 3249787 3249787 G C MRGPRE Silent p.V80V 0.44 TCGA-D3-A51T-06 11 36614459 36614459 G A RAG2 Silent p.C420C 0.41 TCGA-D3-A51T-06 11 373193 373193 G A B4GALNT4 Missense_Mutation p.D180N 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 11 40135965 40135965 C T LRRC4C Silent p.L626L 0.51 TCGA-D3-A51T-06 11 40137302 40137302 C T LRRC4C Missense_Mutation p.E181K 0.35 deleterious(0) probably_damaging(0.987) TCGA-D3-A51T-06 11 4107739 4107739 C T STIM1 Silent p.L503L 0.33 TCGA-D3-A51T-06 11 44941443 44941443 G A TSPAN18 Missense_Mutation p.E170K 0.39 tolerated(0.96) benign(0.001) TCGA-D3-A51T-06 11 45246334 45246334 C T PRDM11 Missense_Mutation p.P437S 0.43 deleterious_low_confidence(0.04) benign(0.076) TCGA-D3-A51T-06 11 45919679 45919679 C T MAPK8IP1 Missense_Mutation p.L49F 0.33 tolerated(0.07) probably_damaging(0.986) TCGA-D3-A51T-06 11 4621445 4621445 C T TRIM68 3'UTR 0.64 TCGA-D3-A51T-06 11 46408063 46408063 G T CHRM4 Silent p.S15S 0.34 TCGA-D3-A51T-06 11 46567197 46567197 G A AMBRA1 Missense_Mutation p.P170S 0.47 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A51T-06 11 46702863 46702863 G A ARHGAP1 Silent p.I172I 0.31 TCGA-D3-A51T-06 11 4825161 4825161 G A OR52R1 Silent p.I150I 0.42 TCGA-D3-A51T-06 11 48285607 48285607 C T OR4X1 Silent p.S65S 0.30 TCGA-D3-A51T-06 11 48347189 48347189 C T OR4C3 Silent p.L233L 0.15 TCGA-D3-A51T-06 11 48510938 48510938 G A OR4A47 Silent p.V198V 0.49 TCGA-D3-A51T-06 11 4967770 4967770 C T OR51A4 Missense_Mutation p.M187I 0.56 tolerated(0.07) possibly_damaging(0.694) TCGA-D3-A51T-06 11 5080594 5080594 C T OR52E2 Nonsense_Mutation p.W88* 0.40 TCGA-D3-A51T-06 11 5142675 5142675 C T OR52A4 RNA 0.39 TCGA-D3-A51T-06 11 51515851 51515851 C T OR4C46 Silent p.T190T 0.40 TCGA-D3-A51T-06 11 5221817 5221817 G A OR51V1 Silent p.I38I 0.37 TCGA-D3-A51T-06 11 5274446 5274446 T A HBG2 3'UTR 0.75 TCGA-D3-A51T-06 11 55322751 55322751 G A OR4C15 Missense_Mutation p.M323I 0.31 tolerated_low_confidence(0.52) benign(0.009) TCGA-D3-A51T-06 11 55340152 55340152 G A OR4C16 Silent p.L183L 0.37 TCGA-D3-A51T-06 11 55587694 55587694 C T OR5D18 Nonsense_Mutation p.Q197* 0.36 TCGA-D3-A51T-06 11 5602505 5602505 C T OR52B6 Silent p.V133V 0.31 TCGA-D3-A51T-06 11 56432089 56432089 C T OR5AR1 Nonsense_Mutation p.Q310* 0.40 TCGA-D3-A51T-06 11 5686212 5686212 G A TRIM5 Missense_Mutation p.R437C 0.39 deleterious(0.02) possibly_damaging(0.756) TCGA-D3-A51T-06 11 57076535 57076535 G A TNKS1BP1 Missense_Mutation p.P1217L 0.40 deleterious(0.05) benign(0.011) TCGA-D3-A51T-06 11 57076622 57076622 G A TNKS1BP1 Missense_Mutation p.A1188V 0.41 tolerated(0.14) benign(0.024) TCGA-D3-A51T-06 11 5757736 5757736 C T OR56B1 5'UTR 0.41 TCGA-D3-A51T-06 11 57958001 57958001 C T OR9Q2 Silent p.F13F 0.44 TCGA-D3-A51T-06 11 58126056 58126056 G A OR5B17 Missense_Mutation p.R163C 0.29 tolerated_low_confidence(0.13) benign(0.028) TCGA-D3-A51T-06 11 58602310 58602310 C T GLYATL2 Silent p.K159K 0.22 TCGA-D3-A51T-06 11 58723347 58723347 G A GLYATL1 Missense_Mutation p.M283I 0.33 tolerated(1) benign(0.005) TCGA-D3-A51T-06 11 59225273 59225273 C T OR4D6 Silent p.P280P 0.31 TCGA-D3-A51T-06 11 5969351 5969351 C T OR56A3 Missense_Mutation p.L259F 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 11 5969447 5969447 C T OR56A3 Missense_Mutation p.L291F 0.42 deleterious(0.02) benign(0.076) TCGA-D3-A51T-06 11 6008061 6008061 C T OR52L1 Missense_Mutation p.G34R 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 11 6008109 6008109 G A OR52L1 Missense_Mutation p.L18F 0.27 tolerated(0.33) benign(0.015) TCGA-D3-A51T-06 11 60230003 60230003 G A MS4A1 Silent p.L52L 0.40 TCGA-D3-A51T-06 11 6024367 6024367 C T OR56A4 Silent p.V4V 0.37 TCGA-D3-A51T-06 11 61563658 61563658 C T FEN1 Silent p.L275L 0.37 TCGA-D3-A51T-06 11 61919372 61919372 C T INCENP Missense_Mutation p.S894F 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 11 61976162 61976162 C T SCGB2A1 5'UTR 0.36 TCGA-D3-A51T-06 11 62534044 62534044 C T POLR2G 3'UTR 0.38 TCGA-D3-A51T-06 11 6265382 6265382 G A CNGA4 Missense_Mutation p.E491K 0.33 tolerated(0.68) benign(0.022) TCGA-D3-A51T-06 11 63313857 63313857 C T RARRES3 3'UTR 0.38 TCGA-D3-A51T-06 11 64508458 64508458 C T RASGRP2 Silent p.G111G 0.47 TCGA-D3-A51T-06 11 64533497 64533497 G A SF1 Intron 0.39 TCGA-D3-A51T-06 11 64533498 64533498 G A SF1 Intron 0.37 TCGA-D3-A51T-06 11 64597253 64597253 G A CDC42BPG Silent p.I1219I 0.27 TCGA-D3-A51T-06 11 64825960 64825960 C T NAALADL1 Missense_Mutation p.G12R 0.45 deleterious(0.05) probably_damaging(0.99) TCGA-D3-A51T-06 11 64897788 64897788 G A SYVN1 Missense_Mutation p.P390L 0.44 tolerated(0.38) unknown(0) TCGA-D3-A51T-06 11 65835464 65835464 C T SF3B2 Missense_Mutation p.A793V 0.37 tolerated(0.05) benign(0.05) TCGA-D3-A51T-06 11 66082536 66082536 A G CD248 Silent p.L655L 0.45 TCGA-D3-A51T-06 11 66358364 66358364 T C CCDC87 Missense_Mutation p.K708R 0.38 deleterious(0) benign(0.131) TCGA-D3-A51T-06 11 66468383 66468383 C T SPTBN2 Missense_Mutation p.E1063K 0.49 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A51T-06 11 67161204 67161204 C T RAD9A Missense_Mutation p.S131F 0.32 deleterious(0.05) possibly_damaging(0.826) TCGA-D3-A51T-06 11 67378902 67378902 C T NDUFV1 Silent p.L314L 0.41 TCGA-D3-A51T-06 11 67412787 67412787 T C ACY3 Missense_Mutation p.N166S 0.36 tolerated(0.9) benign(0.001) TCGA-D3-A51T-06 11 67431903 67431903 C T ALDH3B2 Silent p.K279K 0.28 TCGA-D3-A51T-06 11 69465987 69465988 - GAG CCND1 In_Frame_Ins p.E280dup 0.38 TCGA-D3-A51T-06 11 70208401 70208401 T C PPFIA1 Missense_Mutation p.V891A 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A51T-06 11 70332338 70332338 C T SHANK2 Missense_Mutation p.E1355K 0.35 tolerated(0.27) benign(0.305) TCGA-D3-A51T-06 11 72468891 72468891 G A STARD10 Silent p.S166S 0.36 TCGA-D3-A51T-06 11 75134884 75134884 C T KLHL35 Missense_Mutation p.R472Q 0.42 tolerated(0.18) unknown(0) TCGA-D3-A51T-06 11 7586934 7586934 C T PPFIBP2 Missense_Mutation p.A72V 0.32 deleterious(0.04) benign(0.046) TCGA-D3-A51T-06 11 76062171 76062171 G A PRKRIR Missense_Mutation p.P675S 0.40 deleterious(0.01) possibly_damaging(0.79) TCGA-D3-A51T-06 11 76903203 76903203 C T MYO7A Silent p.L1344L 0.37 TCGA-D3-A51T-06 11 76910700 76910700 G A MYO7A Silent p.A1563A 0.27 TCGA-D3-A51T-06 11 7960903 7960903 G A OR10A3 Silent p.L55L 0.42 TCGA-D3-A51T-06 11 8008777 8008777 G A EIF3F 5'UTR 0.33 TCGA-D3-A51T-06 11 83344332 83344332 C T DLG2 Missense_Mutation p.R621Q 0.41 deleterious(0) possibly_damaging(0.535) TCGA-D3-A51T-06 11 86126324 86126324 G T CCDC81 Missense_Mutation p.D554Y 0.41 deleterious(0) possibly_damaging(0.854) TCGA-D3-A51T-06 11 86518725 86518725 C T PRSS23 Silent p.L14L 0.38 TCGA-D3-A51T-06 11 8704256 8704256 G A RPL27A 5'UTR 0.45 TCGA-D3-A51T-06 11 89224358 89224358 C T NOX4 Silent p.L19L 0.32 TCGA-D3-A51T-06 11 89224397 89224397 C T NOX4 Silent p.R6R 0.48 TCGA-D3-A51T-06 11 92257970 92257970 C T FAT3 Missense_Mutation p.P1155S 0.39 benign(0.304) TCGA-D3-A51T-06 11 99690418 99690418 C T CNTN5 Missense_Mutation p.P67S 0.20 deleterious_low_confidence(0.01) benign(0.004) TCGA-D3-A51T-06 12 109294262 109294262 G A DAO Missense_Mutation p.R332K 0.26 tolerated(0.63) benign(0) TCGA-D3-A51T-06 12 109677680 109677680 C T ACACB Silent p.L1570L 0.38 TCGA-D3-A51T-06 12 109684123 109684123 C T ACACB Missense_Mutation p.S1814F 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 12 112241749 112241749 G A ALDH2 Missense_Mutation p.G498E 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A51T-06 12 112492208 112492208 G T NAA25 Missense_Mutation p.Q538K 0.33 deleterious(0.01) possibly_damaging(0.458) TCGA-D3-A51T-06 12 11420863 11420863 C T PRB3 Missense_Mutation p.G107E 0.44 deleterious(0) unknown(0) TCGA-D3-A51T-06 12 117749276 117749276 C T NOS1 Missense_Mutation p.E283K 0.58 tolerated(0.2) benign(0.013) TCGA-D3-A51T-06 12 117977619 117977619 G A KSR2 Missense_Mutation p.S531L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 12 122399963 122399963 C T WDR66 Missense_Mutation p.P796L 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 12 122729243 122729243 G A VPS33A Missense_Mutation p.P281L 0.48 tolerated(0.23) benign(0.008) TCGA-D3-A51T-06 12 122729244 122729244 G A VPS33A Missense_Mutation p.P281S 0.49 tolerated(0.7) benign(0.012) TCGA-D3-A51T-06 12 123463464 123463464 G A OGFOD2 Silent p.L172L 0.45 TCGA-D3-A51T-06 12 124293344 124293344 G A DNAH10 Silent p.K878K 0.35 TCGA-D3-A51T-06 12 124934394 124934394 G A NCOR2 Missense_Mutation p.S261F 0.37 unknown(0) TCGA-D3-A51T-06 12 130648492 130648492 C T FZD10 Silent p.F335F 0.31 TCGA-D3-A51T-06 12 131569139 131569139 C T GPR133 Silent p.L534L 0.37 TCGA-D3-A51T-06 12 15130928 15130928 C T PDE6H 5'UTR 0.35 TCGA-D3-A51T-06 12 18644418 18644418 G A PIK3C2G Missense_Mutation p.E866K 0.28 tolerated(0.26) benign(0.018) TCGA-D3-A51T-06 12 18747451 18747451 C T PIK3C2G Silent p.F1304F 0.43 TCGA-D3-A51T-06 12 18837133 18837133 C T PLCZ1 Missense_Mutation p.G558S 0.27 tolerated(0.06) benign(0.001) TCGA-D3-A51T-06 12 22837951 22837951 C T ETNK1 3'UTR 0.50 TCGA-D3-A51T-06 12 24736811 24736811 G A LINC00477 RNA 0.39 TCGA-D3-A51T-06 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.38 deleterious(0.03) benign(0.376) TCGA-D3-A51T-06 12 2566815 2566815 A T CACNA1C Nonsense_Mutation p.K234* 0.35 TCGA-D3-A51T-06 12 2705049 2705049 C T CACNA1C Silent p.L891L 0.24 TCGA-D3-A51T-06 12 27132718 27132718 C T TM7SF3 Silent p.L396L 0.33 TCGA-D3-A51T-06 12 32134659 32134659 C T KIAA1551 Missense_Mutation p.P257L 0.33 tolerated(0.11) benign(0.004) TCGA-D3-A51T-06 12 33560108 33560108 G A SYT10 Silent p.I231I 0.35 TCGA-D3-A51T-06 12 34179653 34179653 C T ALG10 Missense_Mutation p.P409S 0.30 deleterious(0.02) probably_damaging(0.943) TCGA-D3-A51T-06 12 3788238 3788238 G A EFCAB4B Missense_Mutation p.P123S 0.59 tolerated(0.65) benign(0.003) TCGA-D3-A51T-06 12 3921430 3921430 G A PARP11 Silent p.S292S 0.54 TCGA-D3-A51T-06 12 4461505 4461505 C T C12orf5 Missense_Mutation p.S154F 0.38 tolerated(0.29) benign(0.053) TCGA-D3-A51T-06 12 4461907 4461907 C T C12orf5 3'UTR 0.50 TCGA-D3-A51T-06 12 45059275 45059275 G A NELL2 Missense_Mutation p.S529L 0.48 deleterious(0.02) possibly_damaging(0.622) TCGA-D3-A51T-06 12 47173411 47173411 C T SLC38A4 Missense_Mutation p.V234M 0.43 deleterious(0.02) benign(0.394) TCGA-D3-A51T-06 12 47629209 47629209 G A PCED1B Missense_Mutation p.M121I 0.46 tolerated(0.42) possibly_damaging(0.621) TCGA-D3-A51T-06 12 48104522 48104522 C T ENDOU 3'UTR 0.41 TCGA-D3-A51T-06 12 48919741 48919741 G A OR8S1 Silent p.G109G 0.29 TCGA-D3-A51T-06 12 48962944 48962944 G T LALBA Silent p.L71L 0.40 TCGA-D3-A51T-06 12 49359907 49359907 C T WNT10B Missense_Mutation p.V381I 0.52 tolerated(0.83) benign(0.197) TCGA-D3-A51T-06 12 49412648 49412648 G T PRKAG1 5'Flank 0.18 TCGA-D3-A51T-06 12 49579070 49579070 G A TUBA1A Missense_Mutation p.P360L 0.44 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-D3-A51T-06 12 53164796 53164796 C T KRT76 Missense_Mutation p.G491R 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 12 53170615 53170615 C A KRT76 Missense_Mutation p.G154V 0.41 deleterious(0) unknown(0) TCGA-D3-A51T-06 12 53170633 53170633 G A KRT76 Missense_Mutation p.P148L 0.45 deleterious(0.01) unknown(0) TCGA-D3-A51T-06 12 53291119 53291119 C T KRT8 3'UTR 0.27 TCGA-D3-A51T-06 12 55028623 55028623 C T LACRT Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) unknown(0) TCGA-D3-A51T-06 12 55248369 55248369 G A MUCL1 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) unknown(0) TCGA-D3-A51T-06 12 55356418 55356418 C T TESPA1 Missense_Mutation p.E422K 0.36 tolerated_low_confidence(0.19) benign(0.009) TCGA-D3-A51T-06 12 55688902 55688902 C T OR6C6 Missense_Mutation p.G39R 0.39 deleterious_low_confidence(0.01) benign(0.157) TCGA-D3-A51T-06 12 55795201 55795201 C T OR6C65 Nonsense_Mutation p.Q297* 0.28 TCGA-D3-A51T-06 12 56398890 56398890 C T SUOX 3'UTR 0.40 TCGA-D3-A51T-06 12 57490531 57490531 T A STAT6 Missense_Mutation p.I790L 0.46 tolerated_low_confidence(1) benign(0) TCGA-D3-A51T-06 12 58197441 58197441 C T AVIL Silent p.G561G 0.50 TCGA-D3-A51T-06 12 58197442 58197442 C T AVIL Missense_Mutation p.G561E 0.50 deleterious(0.03) probably_damaging(1) TCGA-D3-A51T-06 12 64668686 64668686 G A C12orf56 Missense_Mutation p.P367S 0.51 tolerated(0.77) benign(0.249) TCGA-D3-A51T-06 12 68551978 68551978 C T IFNG Nonsense_Mutation p.W59* 0.31 TCGA-D3-A51T-06 12 68707276 68707276 T A MDM1 Nonsense_Mutation p.K556* 0.49 TCGA-D3-A51T-06 12 70953392 70953392 G A PTPRB Missense_Mutation p.P1482L 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 12 70988446 70988446 G A PTPRB Silent p.S439S 0.47 TCGA-D3-A51T-06 12 71050529 71050529 C T PTPRR Missense_Mutation p.G612E 0.36 deleterious(0.05) probably_damaging(0.935) TCGA-D3-A51T-06 12 71148407 71148407 G A PTPRR Intron 0.33 TCGA-D3-A51T-06 12 73046885 73046885 G A TRHDE Missense_Mutation p.R933Q 0.56 tolerated(1) probably_damaging(0.941) TCGA-D3-A51T-06 12 7522075 7522075 C T CD163L1 Missense_Mutation p.G1306E 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 12 7640469 7640469 G A CD163 Silent p.F545F 0.28 TCGA-D3-A51T-06 12 78598741 78598741 A T NAV3 Missense_Mutation p.E2265D 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A51T-06 12 80655845 80655845 G A OTOGL Silent p.V653V 0.30 TCGA-D3-A51T-06 12 81839417 81839417 G A PPFIA2 Missense_Mutation p.S163F 0.38 deleterious(0) probably_damaging(0.978) TCGA-D3-A51T-06 12 85459152 85459152 G A LRRIQ1 Missense_Mutation p.S835N 0.25 tolerated(0.07) possibly_damaging(0.678) TCGA-D3-A51T-06 12 85515512 85515512 C T LRRIQ1 Missense_Mutation p.L1139F 0.37 tolerated(0.06) benign(0.085) TCGA-D3-A51T-06 12 8687200 8687200 C T CLEC4E 3'UTR 0.24 TCGA-D3-A51T-06 12 88554546 88554546 C T TMTC3 Missense_Mutation p.L239F 0.36 tolerated(0.12) benign(0.43) TCGA-D3-A51T-06 12 9086545 9086545 C T PHC1 Missense_Mutation p.P660S 0.21 deleterious(0.03) unknown(0) TCGA-D3-A51T-06 12 91502535 91502535 C T LUM Silent p.R74R 0.36 TCGA-D3-A51T-06 12 9262613 9262613 T A A2M Missense_Mutation p.I175F 0.35 deleterious(0) probably_damaging(0.992) TCGA-D3-A51T-06 12 93100482 93100482 G A C12orf74 Silent p.R25R 0.38 TCGA-D3-A51T-06 12 93209994 93209994 G A EEA1 Silent p.V637V 0.32 TCGA-D3-A51T-06 12 94697658 94697658 A C PLXNC1 Missense_Mutation p.T1505P 0.40 tolerated(0.08) probably_damaging(0.954) TCGA-D3-A51T-06 12 99126212 99126212 C T APAF1 Silent p.V1205V 0.35 TCGA-D3-A51T-06 13 110862343 110862343 C T COL4A1 Missense_Mutation p.G200E 0.67 unknown(0) TCGA-D3-A51T-06 13 20277425 20277425 G A PSPC1 Missense_Mutation p.P488S 0.20 tolerated(0.17) benign(0.059) TCGA-D3-A51T-06 13 22255241 22255241 G A FGF9 Missense_Mutation p.G113E 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 13 25338370 25338370 C T RNF17 Missense_Mutation p.P10L 0.21 tolerated_low_confidence(1) benign(0) TCGA-D3-A51T-06 13 25457454 25457454 G A CENPJ Missense_Mutation p.A1293V 0.21 deleterious(0.02) benign(0.314) TCGA-D3-A51T-06 13 25887865 25887865 C T NUPL1 Nonsense_Mutation p.Q184* 0.35 TCGA-D3-A51T-06 13 28498678 28498678 C T PDX1 Missense_Mutation p.S231F 0.64 deleterious(0) probably_damaging(0.921) TCGA-D3-A51T-06 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.55 tolerated(0.2) benign(0.002) TCGA-D3-A51T-06 13 29600384 29600384 G A MTUS2 Missense_Mutation p.D527N 0.22 tolerated(0.23) benign(0.001) TCGA-D3-A51T-06 13 29600664 29600664 C T MTUS2 Missense_Mutation p.S620F 0.52 deleterious(0) possibly_damaging(0.789) TCGA-D3-A51T-06 13 29600884 29600884 G T MTUS2 Missense_Mutation p.K693N 0.14 deleterious(0) possibly_damaging(0.891) TCGA-D3-A51T-06 13 29608162 29608162 G A MTUS2 Silent p.K792K 0.72 TCGA-D3-A51T-06 13 31540398 31540398 G A TEX26 Nonsense_Mutation p.W170* 0.23 TCGA-D3-A51T-06 13 32527418 32527418 G A EEF1DP3 RNA 0.47 TCGA-D3-A51T-06 13 32698994 32698994 G A FRY Missense_Mutation p.G233E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 13 32799128 32799128 G A FRY Missense_Mutation p.D1659N 0.25 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 13 32911141 32911141 C T BRCA2 Silent p.F883F 0.21 TCGA-D3-A51T-06 13 35743124 35743124 G A NBEA Missense_Mutation p.G1412S 0.16 tolerated(0.76) benign(0) TCGA-D3-A51T-06 13 37678371 37678371 C T CSNK1A1L 3'UTR 0.15 TCGA-D3-A51T-06 13 38357368 38357368 C T TRPC4 Missense_Mutation p.A35T 0.19 tolerated(0.28) possibly_damaging(0.637) TCGA-D3-A51T-06 13 47011926 47011926 C T PPP1R2P4 RNA 0.16 TCGA-D3-A51T-06 13 52667266 52667266 G A NEK5 Missense_Mutation p.H378Y 0.28 tolerated(0.75) benign(0.002) TCGA-D3-A51T-06 13 53418632 53418632 C T PCDH8 3'UTR 0.23 TCGA-D3-A51T-06 13 53420335 53420335 C T PCDH8 Nonsense_Mutation p.W746* 0.10 TCGA-D3-A51T-06 13 58299281 58299281 C T PCDH17 Silent p.S1111S 0.64 TCGA-D3-A51T-06 13 67799934 67799934 G A PCDH9 Missense_Mutation p.S880F 0.16 tolerated(0.38) possibly_damaging(0.628) TCGA-D3-A51T-06 13 78202140 78202140 G A SCEL Missense_Mutation p.G563R 0.21 tolerated(0.19) benign(0.006) TCGA-D3-A51T-06 13 92101015 92101015 G A GPC5 Missense_Mutation p.G55E 0.64 tolerated(0.09) probably_damaging(0.913) TCGA-D3-A51T-06 13 94482562 94482562 G A GPC6 Missense_Mutation p.E159K 0.15 deleterious(0) possibly_damaging(0.696) TCGA-D3-A51T-06 13 96506702 96506702 G A UGGT2 Nonsense_Mutation p.R1346* 0.69 TCGA-D3-A51T-06 13 99537975 99537975 G A DOCK9 Silent p.V749V 0.62 TCGA-D3-A51T-06 14 100172902 100172902 C T CYP46A1 Intron 0.48 TCGA-D3-A51T-06 14 100615479 100615479 G A DEGS2 Silent p.F217F 0.39 TCGA-D3-A51T-06 14 101010253 101010253 G A BEGAIN Missense_Mutation p.A98V 0.42 tolerated(0.77) probably_damaging(0.999) TCGA-D3-A51T-06 14 101341367 101341367 G A MIR337 3'Flank 0.35 TCGA-D3-A51T-06 14 101439060 101439060 C T SNORD114-15 RNA 0.38 TCGA-D3-A51T-06 14 103932349 103932349 C T MARK3 Missense_Mutation p.P273L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 14 104570642 104570642 T C ASPG Missense_Mutation p.V252A 0.21 deleterious(0) possibly_damaging(0.672) TCGA-D3-A51T-06 14 105405414 105405414 G A AHNAK2 Silent p.P5458P 0.60 TCGA-D3-A51T-06 14 105414309 105414309 G A AHNAK2 Silent p.F2493F 0.38 TCGA-D3-A51T-06 14 105477549 105477549 C T CDCA4 Missense_Mutation p.E240K 0.31 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-D3-A51T-06 14 106054648 106054648 G A IGHA2 Nonsense_Mutation p.Q29* 0.29 TCGA-D3-A51T-06 14 106173632 106173632 G A IGHA1 Missense_Mutation p.S312F 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A51T-06 14 106311849 106311849 G A IGHD Missense_Mutation p.P55S 0.31 tolerated_low_confidence(0.34) possibly_damaging(0.536) TCGA-D3-A51T-06 14 106321212 106321212 C T IGHM Nonsense_Mutation p.W259* 0.42 TCGA-D3-A51T-06 14 106552566 106552566 C T IGHV3-9 Missense_Mutation p.E25K 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-D3-A51T-06 14 106829627 106829627 G A IGHV4-34 Silent p.T112T 0.38 TCGA-D3-A51T-06 14 106926339 106926339 G A IGHV3-43 Missense_Mutation p.S68F 0.30 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-D3-A51T-06 14 106926469 106926469 C T IGHV3-43 Missense_Mutation p.E25K 0.20 deleterious_low_confidence(0.01) benign(0.436) TCGA-D3-A51T-06 14 107034838 107034838 G A IGHV5-51 Missense_Mutation p.P81L 0.24 deleterious(0.04) possibly_damaging(0.605) TCGA-D3-A51T-06 14 107034839 107034839 G A IGHV5-51 Missense_Mutation p.P81S 0.24 tolerated(0.15) benign(0.306) TCGA-D3-A51T-06 14 107048861 107048861 C T IGHV3-53 Missense_Mutation p.M53I 0.18 deleterious_low_confidence(0.03) benign(0.109) TCGA-D3-A51T-06 14 107131222 107131222 C T IGHV3-66 Missense_Mutation p.M53I 0.50 deleterious_low_confidence(0.03) benign(0.074) TCGA-D3-A51T-06 14 20215586 20215586 G A OR4Q3 5'Flank 0.27 TCGA-D3-A51T-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.18 deleterious(0) possibly_damaging(0.659) TCGA-D3-A51T-06 14 20248748 20248748 G A OR4M1 Silent p.R89R 0.21 TCGA-D3-A51T-06 14 20249337 20249337 C T OR4M1 Missense_Mutation p.P286S 0.15 deleterious(0.01) possibly_damaging(0.725) TCGA-D3-A51T-06 14 20295638 20295638 G A OR4N2 Missense_Mutation p.E11K 0.19 deleterious(0.02) benign(0.12) TCGA-D3-A51T-06 14 20295725 20295725 C T OR4N2 Missense_Mutation p.P40S 0.16 tolerated(0.15) possibly_damaging(0.902) TCGA-D3-A51T-06 14 20692216 20692216 C T OR11H6 Silent p.F116F 0.35 TCGA-D3-A51T-06 14 21108902 21108902 C T OR6S1 Missense_Mutation p.G317R 0.37 tolerated(0.66) benign(0.001) TCGA-D3-A51T-06 14 21796596 21796596 C T RPGRIP1 Missense_Mutation p.S970F 0.24 tolerated(0.22) benign(0.02) TCGA-D3-A51T-06 14 21992636 21992636 C T SALL2 Missense_Mutation p.R409H 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 14 22205121 22205121 G A TRAV4 Missense_Mutation p.R62Q 0.52 tolerated(1) benign(0.002) TCGA-D3-A51T-06 14 22309670 22309670 G A TRAV12-1 Nonsense_Mutation p.W17* 0.26 TCGA-D3-A51T-06 14 22989426 22989426 G A TRAJ23 Missense_Mutation p.G12R 0.31 unknown(0) TCGA-D3-A51T-06 14 23235902 23235902 C T OXA1L Missense_Mutation p.P58S 0.40 tolerated_low_confidence(0.46) benign(0.004) TCGA-D3-A51T-06 14 23374321 23374321 G A RBM23 Silent p.I236I 0.46 TCGA-D3-A51T-06 14 23938908 23938908 G A NGDN 5'UTR 0.28 TCGA-D3-A51T-06 14 24896906 24896906 C T CBLN3 3'UTR 0.34 TCGA-D3-A51T-06 14 25078796 25078796 C T GZMH Silent p.L8L 0.25 TCGA-D3-A51T-06 14 35272177 35272177 C T BAZ1A Silent p.T248T 0.46 TCGA-D3-A51T-06 14 36300691 36300691 C T BRMS1L Missense_Mutation p.T73I 0.40 tolerated(0.09) possibly_damaging(0.771) TCGA-D3-A51T-06 14 42361152 42361152 A G LRFN5 Silent p.A695A 0.60 TCGA-D3-A51T-06 14 45644818 45644818 C T FANCM Missense_Mutation p.S954F 0.27 deleterious(0) benign(0.365) TCGA-D3-A51T-06 14 51371094 51371094 G A ABHD12B 3'UTR 0.28 TCGA-D3-A51T-06 14 52520473 52520473 C T NID2 Missense_Mutation p.G418E 0.27 tolerated(1) benign(0) TCGA-D3-A51T-06 14 52534765 52534765 C T NID2 Silent p.T115T 0.34 TCGA-D3-A51T-06 14 55836455 55836455 G A ATG14 Missense_Mutation p.S454F 0.55 tolerated(0.05) benign(0.054) TCGA-D3-A51T-06 14 60923774 60923774 C T C14orf39 Missense_Mutation p.D407N 0.36 tolerated(1) benign(0.001) TCGA-D3-A51T-06 14 63851225 63851225 G A PPP2R5E Missense_Mutation p.S380F 0.29 tolerated(0.51) benign(0.442) TCGA-D3-A51T-06 14 64599047 64599047 C T SYNE2 Missense_Mutation p.P4802L 0.30 probably_damaging(0.999) TCGA-D3-A51T-06 14 65209862 65209862 C T PLEKHG3 Missense_Mutation p.S978F 0.44 deleterious(0.02) possibly_damaging(0.681) TCGA-D3-A51T-06 14 65246585 65246585 G A SPTB Missense_Mutation p.S1444L 0.40 tolerated(0.15) benign(0.008) TCGA-D3-A51T-06 14 65253298 65253298 G A SPTB Nonsense_Mutation p.Q1129* 0.46 TCGA-D3-A51T-06 14 67589053 67589053 A G GPHN Silent p.E569E 0.32 TCGA-D3-A51T-06 14 72205785 72205785 G A SIPA1L1 Silent p.E1774E 0.35 TCGA-D3-A51T-06 14 73137905 73137905 G A DPF3 Missense_Mutation p.S338F 0.46 tolerated_low_confidence(0.08) unknown(0) TCGA-D3-A51T-06 14 74425655 74425655 G A ENTPD5 3'Flank 0.28 TCGA-D3-A51T-06 14 74425656 74425656 G A ENTPD5 3'Flank 0.28 TCGA-D3-A51T-06 14 74756199 74756199 G A ABCD4 Silent p.V481V 0.18 TCGA-D3-A51T-06 14 74824766 74824766 G A VRTN Missense_Mutation p.R427K 0.46 tolerated(0.22) possibly_damaging(0.473) TCGA-D3-A51T-06 14 75248484 75248484 C T YLPM1 Missense_Mutation p.P580S 0.44 unknown(0) TCGA-D3-A51T-06 14 91927910 91927910 G A SMEK1 Missense_Mutation p.L723F 0.38 tolerated(0.48) benign(0.004) TCGA-D3-A51T-06 14 92258807 92258807 C T TC2N Silent p.R317R 0.39 TCGA-D3-A51T-06 14 92487982 92487982 G A TRIP11 Missense_Mutation p.S169L 0.32 tolerated(0.22) benign(0.069) TCGA-D3-A51T-06 14 94088083 94088083 C T UNC79 Missense_Mutation p.L1325F 0.27 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-D3-A51T-06 15 22368704 22368704 C T OR4M2 Silent p.I43I 0.26 TCGA-D3-A51T-06 15 22383122 22383122 C T OR4N4 Missense_Mutation p.S217F 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 15 22962505 22962505 C T CYFIP1 Missense_Mutation p.P742L 0.45 tolerated(0.12) benign(0.105) TCGA-D3-A51T-06 15 24924229 24924229 G A NPAP1 Missense_Mutation p.G1072E 0.39 tolerated_low_confidence(0.2) benign(0.35) TCGA-D3-A51T-06 15 25331747 25331747 C T SNORD116-19 RNA 0.29 TCGA-D3-A51T-06 15 25479234 25479234 G A SNORD115-33 3'Flank 0.47 TCGA-D3-A51T-06 15 25479235 25479235 G A SNORD115-33 3'Flank 0.48 TCGA-D3-A51T-06 15 28358283 28358283 G A HERC2 Silent p.F4722F 0.41 TCGA-D3-A51T-06 15 28422225 28422225 G A HERC2 Silent p.I3101I 0.23 TCGA-D3-A51T-06 15 28502252 28502252 C T HERC2 Silent p.E824E 0.38 TCGA-D3-A51T-06 15 30025312 30025312 G A TJP1 Silent p.I574I 0.29 TCGA-D3-A51T-06 15 31239361 31239361 G T MTMR10 Missense_Mutation p.S507Y 0.28 deleterious(0) possibly_damaging(0.823) TCGA-D3-A51T-06 15 34355747 34355747 A C CHRM5 Missense_Mutation p.S277R 0.40 tolerated(0.46) benign(0.132) TCGA-D3-A51T-06 15 35085669 35085669 G A ACTC1 Silent p.I77I 0.30 TCGA-D3-A51T-06 15 40265894 40265894 A C EIF2AK4 Missense_Mutation p.I588L 0.49 deleterious(0.05) benign(0.001) TCGA-D3-A51T-06 15 41120890 41120890 G A PPP1R14D 5'UTR 0.40 TCGA-D3-A51T-06 15 42154373 42154373 G A SPTBN5 Silent p.S2501S 0.25 TCGA-D3-A51T-06 15 42174878 42174878 C T SPTBN5 Missense_Mutation p.E651K 0.75 probably_damaging(0.928) TCGA-D3-A51T-06 15 42185570 42185570 C T SPTBN5 Silent p.T42T 0.54 TCGA-D3-A51T-06 15 42455830 42455830 G A VPS39 Missense_Mutation p.A708V 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 15 43572121 43572121 C T TGM7 Missense_Mutation p.M460I 0.38 tolerated(0.2) benign(0.004) TCGA-D3-A51T-06 15 43577114 43577114 G A TGM7 Missense_Mutation p.S301F 0.31 deleterious(0) probably_damaging(0.975) TCGA-D3-A51T-06 15 43890396 43890396 G A CKMT1B Silent p.E294E 0.42 TCGA-D3-A51T-06 15 45710813 45710813 C T SPATA5L1 Missense_Mutation p.S676F 0.42 deleterious(0.01) possibly_damaging(0.805) TCGA-D3-A51T-06 15 50782595 50782595 C T USP8 Missense_Mutation p.P703S 0.42 tolerated(0.1) probably_damaging(0.986) TCGA-D3-A51T-06 15 51692428 51692428 G A GLDN Missense_Mutation p.G286E 0.44 tolerated(0.06) probably_damaging(0.921) TCGA-D3-A51T-06 15 51783792 51783792 G T DMXL2 Silent p.R1646R 0.51 TCGA-D3-A51T-06 15 52016990 52016990 C T LYSMD2 Missense_Mutation p.S201N 0.42 tolerated(0.3) benign(0.004) TCGA-D3-A51T-06 15 52505446 52505446 G A MYO5C Silent p.Y1360Y 0.26 TCGA-D3-A51T-06 15 52556396 52556396 G A MYO5C Silent p.S346S 0.30 TCGA-D3-A51T-06 15 53809795 53809795 A G WDR72 3'UTR 0.33 TCGA-D3-A51T-06 15 57484473 57484473 C T TCF12 Missense_Mutation p.H170Y 0.32 tolerated(0.15) benign(0.212) TCGA-D3-A51T-06 15 59784512 59784512 G A FAM81A Missense_Mutation p.G113R 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 15 62283975 62283975 C T VPS13C Silent p.R460R 0.41 TCGA-D3-A51T-06 15 64717750 64717750 C T TRIP4 Missense_Mutation p.P499S 0.25 deleterious(0.01) possibly_damaging(0.817) TCGA-D3-A51T-06 15 65502077 65502077 G A CILP Missense_Mutation p.A6V 0.42 tolerated_low_confidence(0.06) benign(0.035) TCGA-D3-A51T-06 15 67457672 67457672 C T SMAD3 Missense_Mutation p.P161L 0.33 deleterious(0.01) possibly_damaging(0.888) TCGA-D3-A51T-06 15 72491944 72491944 G A PKM 3'UTR 0.42 TCGA-D3-A51T-06 15 74536432 74536432 G A CCDC33 Missense_Mutation p.G43E 0.35 deleterious(0) probably_damaging(0.988) TCGA-D3-A51T-06 15 75798234 75798234 G A PTPN9 Silent p.F250F 0.32 TCGA-D3-A51T-06 15 81176684 81176684 C T KIAA1199 Silent p.H262H 0.58 TCGA-D3-A51T-06 15 81212479 81212479 C T KIAA1199 Silent p.F614F 0.30 TCGA-D3-A51T-06 15 83932990 83932990 G A BNC1 Missense_Mutation p.S338F 0.37 tolerated(0.1) possibly_damaging(0.514) TCGA-D3-A51T-06 15 86312345 86312345 G A KLHL25 Missense_Mutation p.L233F 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 15 90347724 90347724 G A ANPEP Missense_Mutation p.S341L 0.34 tolerated(0.96) benign(0.023) TCGA-D3-A51T-06 15 91295039 91295039 T C BLM Silent p.N274N 0.20 TCGA-D3-A51T-06 15 95013640 95013640 C T MCTP2 Silent p.F813F 0.32 TCGA-D3-A51T-06 16 10274178 10274178 G A GRIN2A Missense_Mutation p.P31S 0.37 tolerated(0.15) benign(0.005) TCGA-D3-A51T-06 16 15098188 15098188 C T PDXDC1 Silent p.F129F 0.19 TCGA-D3-A51T-06 16 17221574 17221574 G A XYLT1 Silent p.V724V 0.42 TCGA-D3-A51T-06 16 18597253 18597253 C T ABCC6P1 RNA 0.37 TCGA-D3-A51T-06 16 18597254 18597254 C T ABCC6P1 RNA 0.37 TCGA-D3-A51T-06 16 19046997 19046997 G A TMC7 Splice_Site p.X286_splice 0.32 TCGA-D3-A51T-06 16 19452009 19452009 C T TMC5 Missense_Mutation p.P217S 0.30 tolerated_low_confidence(0.16) benign(0.01) TCGA-D3-A51T-06 16 20380937 20380937 G A PDILT Silent p.V331V 0.35 TCGA-D3-A51T-06 16 20384133 20384133 G A PDILT Silent p.F303F 0.29 TCGA-D3-A51T-06 16 20498036 20498036 C T ACSM2A 3'UTR 0.41 TCGA-D3-A51T-06 16 20946802 20946802 C T DNAH3 Nonsense_Mutation p.W3955* 0.45 TCGA-D3-A51T-06 16 2163265 2163265 G T PKD1 Nonsense_Mutation p.S961* 0.31 TCGA-D3-A51T-06 16 2163267 2163267 G A PKD1 Silent p.G960G 0.30 TCGA-D3-A51T-06 16 22166979 22166979 C T VWA3A Missense_Mutation p.S1166F 0.50 tolerated(0.07) benign(0.014) TCGA-D3-A51T-06 16 23716293 23716293 G A ERN2 Silent p.F303F 0.36 TCGA-D3-A51T-06 16 2474740 2474740 C T CCNF 5'Flank 0.27 TCGA-D3-A51T-06 16 24817561 24817561 A G TNRC6A Missense_Mutation p.Q1429R 0.40 deleterious(0) possibly_damaging(0.767) TCGA-D3-A51T-06 16 24831582 24831582 C A TNRC6A Missense_Mutation p.P1735T 0.31 deleterious(0) probably_damaging(0.991) TCGA-D3-A51T-06 16 27455915 27455915 C T IL21R Missense_Mutation p.P187L 0.48 deleterious(0.05) benign(0.138) TCGA-D3-A51T-06 16 27455916 27455916 C T IL21R Silent p.P187P 0.47 TCGA-D3-A51T-06 16 29376178 29376178 G A SNX29P2 RNA 0.34 TCGA-D3-A51T-06 16 29827970 29827971 - CGGC PAGR1 Frame_Shift_Ins p.K45Rfs*2 0.39 TCGA-D3-A51T-06 16 30997973 30997973 C T HSD3B7 Missense_Mutation p.P160L 0.38 deleterious(0) probably_damaging(0.989) TCGA-D3-A51T-06 16 31073159 31073159 A T ZNF668 Missense_Mutation p.F387I 0.41 deleterious(0.01) possibly_damaging(0.894) TCGA-D3-A51T-06 16 31143657 31143657 C T PRSS8 Splice_Site p.X236_splice 0.30 TCGA-D3-A51T-06 16 3640456 3640456 G A SLX4 Silent p.S1061S 0.31 TCGA-D3-A51T-06 16 3842066 3842066 T C CREBBP Missense_Mutation p.I416V 0.31 probably_damaging(0.958) TCGA-D3-A51T-06 16 4430870 4430870 G A VASN Intron 0.29 TCGA-D3-A51T-06 16 49430390 49430390 C T C16orf78 Missense_Mutation p.R151C 0.34 deleterious(0.01) benign(0.439) TCGA-D3-A51T-06 16 55532214 55532214 G A MMP2 Nonsense_Mutation p.W541* 0.53 TCGA-D3-A51T-06 16 56374802 56374802 C T GNAO1 Silent p.F260F 0.41 TCGA-D3-A51T-06 16 568977 568977 C T RAB11FIP3 Missense_Mutation p.R559W 0.28 deleterious(0) probably_damaging(0.973) TCGA-D3-A51T-06 16 57931788 57931788 G A CNGB1 Nonsense_Mutation p.Q1003* 0.39 TCGA-D3-A51T-06 16 58580319 58580319 C T CNOT1 Silent p.K1304K 0.42 TCGA-D3-A51T-06 16 58620522 58620522 G A CNOT1 Silent p.L188L 0.35 TCGA-D3-A51T-06 16 64981596 64981596 C T CDH11 Silent p.L767L 0.35 TCGA-D3-A51T-06 16 66436590 66436590 C T CDH5 Missense_Mutation p.R625W 0.29 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 16 66436860 66436860 G A CDH5 Missense_Mutation p.E715K 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 16 66945813 66945813 G A CDH16 Silent p.S593S 0.48 TCGA-D3-A51T-06 16 68338067 68338067 C T SLC7A6OS Silent p.E180E 0.39 TCGA-D3-A51T-06 16 70190628 70190628 T G PDPR Missense_Mutation p.V829G 0.25 tolerated(0.24) benign(0.424) TCGA-D3-A51T-06 16 70896023 70896023 C T HYDIN Missense_Mutation p.G3902E 0.40 probably_damaging(0.988) TCGA-D3-A51T-06 16 72991843 72991843 G A ZFHX3 Silent p.S734S 0.32 TCGA-D3-A51T-06 16 732578 732578 C T JMJD8 3'UTR 0.33 TCGA-D3-A51T-06 16 746973 746973 C T FBXL16 Missense_Mutation p.E145K 0.39 deleterious(0) possibly_damaging(0.883) TCGA-D3-A51T-06 16 77375696 77375696 C T ADAMTS18 Missense_Mutation p.D539N 0.30 deleterious(0.03) possibly_damaging(0.53) TCGA-D3-A51T-06 16 77398163 77398163 G A ADAMTS18 Silent p.L298L 0.44 TCGA-D3-A51T-06 16 77859208 77859208 G A VAT1L Silent p.V143V 0.30 TCGA-D3-A51T-06 16 84043400 84043400 C T SLC38A8 Missense_Mutation p.E433K 0.34 deleterious(0.04) possibly_damaging(0.637) TCGA-D3-A51T-06 16 86602438 86602438 G A FOXC2 Silent p.T499T 0.37 TCGA-D3-A51T-06 16 9856912 9856912 C T GRIN2A 3'UTR 0.50 TCGA-D3-A51T-06 16 9856913 9856913 T A GRIN2A 3'UTR 0.50 TCGA-D3-A51T-06 16 9857077 9857077 G A GRIN2A Missense_Mutation p.P1442S 0.45 deleterious(0.04) benign(0.153) TCGA-D3-A51T-06 16 9923500 9923500 C T GRIN2A Missense_Mutation p.G596E 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 17 10298675 10298675 G A MYH8 Silent p.I1579I 0.71 TCGA-D3-A51T-06 17 10307703 10307703 C T MYH8 Missense_Mutation p.E878K 0.58 deleterious(0) benign(0.371) TCGA-D3-A51T-06 17 10348614 10348614 C T MYH4 Missense_Mutation p.M1745I 0.66 tolerated(0.1) benign(0.021) TCGA-D3-A51T-06 17 10356532 10356532 C T MYH4 Missense_Mutation p.M1016I 0.72 tolerated(0.07) benign(0) TCGA-D3-A51T-06 17 10362679 10362679 G A MYH4 Silent p.F492F 0.65 TCGA-D3-A51T-06 17 12626229 12626229 G A MYOCD Missense_Mutation p.D107N 0.69 tolerated(0.09) probably_damaging(0.995) TCGA-D3-A51T-06 17 12655875 12655875 C T MYOCD Missense_Mutation p.P424S 0.80 tolerated(0.08) probably_damaging(1) TCGA-D3-A51T-06 17 1444865 1444865 C T PITPNA Missense_Mutation p.E123K 0.75 tolerated(0.05) possibly_damaging(0.654) TCGA-D3-A51T-06 17 20358697 20358697 G A LGALS9B Silent p.V153V 0.86 TCGA-D3-A51T-06 17 20805659 20805659 G A RP11-344E13.3 RNA 0.75 TCGA-D3-A51T-06 17 27380580 27380580 C T PIPOX Silent p.L209L 0.29 TCGA-D3-A51T-06 17 27401845 27401845 G A MYO18A Silent p.S2036S 0.13 TCGA-D3-A51T-06 17 28507991 28507991 G C NSRP1 Missense_Mutation p.V192L 0.47 tolerated(0.07) possibly_damaging(0.766) TCGA-D3-A51T-06 17 29233246 29233246 C T TEFM 5'UTR 0.34 TCGA-D3-A51T-06 17 32614654 32614654 G A CCL11 Nonsense_Mutation p.W80* 0.25 TCGA-D3-A51T-06 17 33353427 33353427 G A RFFL Missense_Mutation p.S49F 0.43 deleterious(0) benign(0.118) TCGA-D3-A51T-06 17 33504104 33504104 G A UNC45B Silent p.K700K 0.52 TCGA-D3-A51T-06 17 3661037 3661037 G A ITGAE Missense_Mutation p.S328F 0.70 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 17 38126760 38126760 C T GSDMA Silent p.L140L 0.65 TCGA-D3-A51T-06 17 38324456 38324456 G A CASC3 Missense_Mutation p.G584D 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 17 39084593 39084593 T A KRT23 Missense_Mutation p.E273V 0.27 tolerated(0.07) possibly_damaging(0.903) TCGA-D3-A51T-06 17 39552819 39552819 G A KRT31 Silent p.T147T 0.53 TCGA-D3-A51T-06 17 39619290 39619290 C T KRT32 Missense_Mutation p.E337K 0.28 deleterious(0) possibly_damaging(0.589) TCGA-D3-A51T-06 17 39620353 39620353 C T KRT32 Missense_Mutation p.E325K 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 17 39975475 39975475 C T FKBP10 Silent p.P247P 0.19 TCGA-D3-A51T-06 17 40652901 40652901 C T ATP6V0A1 Missense_Mutation p.S626F 0.43 deleterious(0.04) possibly_damaging(0.701) TCGA-D3-A51T-06 17 42426860 42426860 G C GRN Missense_Mutation p.A69P 0.46 tolerated(0.4) benign(0.005) TCGA-D3-A51T-06 17 42426862 42426862 C T GRN Silent p.A69A 0.46 TCGA-D3-A51T-06 17 42850638 42850638 G A ADAM11 Missense_Mutation p.E279K 0.42 deleterious(0.03) probably_damaging(0.91) TCGA-D3-A51T-06 17 43176825 43176825 C T NMT1 Missense_Mutation p.H313Y 0.24 tolerated(0.08) benign(0.025) TCGA-D3-A51T-06 17 43198601 43198601 G A PLCD3 Missense_Mutation p.P101L 0.50 tolerated(0.35) benign(0.003) TCGA-D3-A51T-06 17 43342164 43342164 G A SPATA32 5'Flank 0.78 TCGA-D3-A51T-06 17 43351890 43351890 G A MAP3K14 RNA 0.32 TCGA-D3-A51T-06 17 43923097 43923097 C T SPPL2C Silent p.D275D 0.28 TCGA-D3-A51T-06 17 44109471 44109471 C T KANSL1 Missense_Mutation p.R1011Q 0.31 deleterious(0) possibly_damaging(0.905) TCGA-D3-A51T-06 17 46847144 46847144 G A TTLL6 Missense_Mutation p.L786F 0.48 tolerated_low_confidence(0.34) benign(0.033) TCGA-D3-A51T-06 17 46847179 46847179 G A TTLL6 Missense_Mutation p.S774F 0.25 deleterious(0) probably_damaging(0.931) TCGA-D3-A51T-06 17 46868953 46868953 G A TTLL6 Silent p.T337T 0.44 TCGA-D3-A51T-06 17 4836052 4836052 C T GP1BA Silent p.I51I 0.62 TCGA-D3-A51T-06 17 48450550 48450550 C T MRPL27 5'UTR 0.39 TCGA-D3-A51T-06 17 48696338 48696338 C T CACNA1G Missense_Mutation p.S1917L 0.33 tolerated(0.31) benign(0.01) TCGA-D3-A51T-06 17 48822077 48822078 - A LUC7L3 Frame_Shift_Ins p.I200Nfs*11 0.27 TCGA-D3-A51T-06 17 4927035 4927035 C T KIF1C Silent p.A967A 0.77 TCGA-D3-A51T-06 17 51900977 51900977 C T KIF2B Missense_Mutation p.R195C 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A51T-06 17 57741223 57741223 G A CLTC Silent p.L463L 0.24 TCGA-D3-A51T-06 17 59668385 59668385 G A NACA2 Silent p.L53L 0.27 TCGA-D3-A51T-06 17 60813480 60813480 C T MARCH10 Missense_Mutation p.M583I 0.31 tolerated(0.15) benign(0.001) TCGA-D3-A51T-06 17 61568606 61568606 G A ACE Missense_Mutation p.D926N 0.51 tolerated(0.77) benign(0.003) TCGA-D3-A51T-06 17 61949525 61949525 C T CSH2 Missense_Mutation p.M205I 0.30 tolerated(0.39) benign(0.001) TCGA-D3-A51T-06 17 62130278 62130278 G A ERN1 Silent p.I705I 0.68 TCGA-D3-A51T-06 17 62481960 62481960 A G POLG2 Missense_Mutation p.V332A 0.29 tolerated(0.11) possibly_damaging(0.452) TCGA-D3-A51T-06 17 63173899 63173899 C T RGS9 Missense_Mutation p.P211L 0.58 deleterious(0.02) probably_damaging(0.976) TCGA-D3-A51T-06 17 64880766 64880766 C T CACNG5 Silent p.F186F 0.40 TCGA-D3-A51T-06 17 67079011 67079011 C T ABCA6 Intron 0.41 TCGA-D3-A51T-06 17 67084326 67084326 C T ABCA6 Missense_Mutation p.R1227Q 0.27 tolerated(0.12) benign(0.01) TCGA-D3-A51T-06 17 67210939 67210939 C T ABCA10 Silent p.G304G 0.42 TCGA-D3-A51T-06 17 72608711 72608711 C T CD300E 3'Flank 0.38 TCGA-D3-A51T-06 17 73738533 73738533 G A ITGB4 Silent p.K915K 0.45 TCGA-D3-A51T-06 17 74004105 74004105 G A EVPL Silent p.T1727T 0.51 TCGA-D3-A51T-06 17 74004348 74004348 G A EVPL Silent p.L1646L 0.31 TCGA-D3-A51T-06 17 74004663 74004663 C T EVPL Silent p.E1541E 0.24 TCGA-D3-A51T-06 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.68 TCGA-D3-A51T-06 17 76557804 76557804 C T DNAH17 Missense_Mutation p.E610K 0.45 benign(0.002) TCGA-D3-A51T-06 17 77808599 77808599 G A CBX4 Missense_Mutation p.S281F 0.52 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 17 7942602 7942602 G A ALOX15B Silent p.K43K 0.61 TCGA-D3-A51T-06 17 79512820 79512820 G A C17orf70 Silent p.I754I 0.64 TCGA-D3-A51T-06 18 12277249 12277249 G A CIDEA Missense_Mutation p.G214S 0.43 tolerated(0.18) benign(0.007) TCGA-D3-A51T-06 18 12277250 12277250 G A CIDEA Missense_Mutation p.G214D 0.43 deleterious(0.03) benign(0.206) TCGA-D3-A51T-06 18 13621234 13621234 G A LDLRAD4 Silent p.P100P 0.33 TCGA-D3-A51T-06 18 19153318 19153318 A G ESCO1 Missense_Mutation p.L496S 0.23 deleterious(0.03) benign(0.024) TCGA-D3-A51T-06 18 19353597 19353597 C T MIB1 Nonsense_Mutation p.Q182* 0.43 TCGA-D3-A51T-06 18 21427487 21427487 C T LAMA3 Missense_Mutation p.R1331C 0.37 possibly_damaging(0.776) TCGA-D3-A51T-06 18 21487526 21487526 C T LAMA3 Missense_Mutation p.A2244V 0.29 benign(0.41) TCGA-D3-A51T-06 18 28576771 28576771 G A DSC3 Missense_Mutation p.P827S 0.31 tolerated(0.07) possibly_damaging(0.492) TCGA-D3-A51T-06 18 28659935 28659935 G A DSC2 Missense_Mutation p.P514L 0.34 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A51T-06 18 2891020 2891020 G A EMILIN2 Missense_Mutation p.E299K 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 18 29111179 29111179 C T DSG2 Missense_Mutation p.A415V 0.46 tolerated(0.16) benign(0.058) TCGA-D3-A51T-06 18 29429670 29429670 G T TRAPPC8 Missense_Mutation p.F1198L 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 18 30093414 30093414 G A WBP11P1 RNA 0.45 TCGA-D3-A51T-06 18 31322904 31322904 C T ASXL3 Missense_Mutation p.S1031F 0.35 possibly_damaging(0.723) TCGA-D3-A51T-06 18 31538328 31538328 G A NOL4 Nonsense_Mutation p.R371* 0.31 TCGA-D3-A51T-06 18 43314342 43314342 C T SLC14A1 Missense_Mutation p.P205S 0.32 deleterious(0) probably_damaging(0.925) TCGA-D3-A51T-06 18 43447663 43447663 G A EPG5 Silent p.L2092L 0.44 TCGA-D3-A51T-06 18 44560697 44560697 C T TCEB3B Silent p.S313S 0.35 TCGA-D3-A51T-06 18 47511163 47511163 C T MYO5B Missense_Mutation p.G291R 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 18 48604768 48604768 C T SMAD4 Silent p.H530H 0.23 TCGA-D3-A51T-06 18 50985814 50985814 G A DCC Missense_Mutation p.S1202N 0.41 deleterious(0.04) benign(0.033) TCGA-D3-A51T-06 18 52608311 52608311 G A CCDC68 Nonsense_Mutation p.R41* 0.20 TCGA-D3-A51T-06 18 55103586 55103586 C T ONECUT2 Missense_Mutation p.P213L 0.37 deleterious(0.01) benign(0.057) TCGA-D3-A51T-06 18 580847 580847 G A CETN1 Missense_Mutation p.D147N 0.26 deleterious(0.05) benign(0.107) TCGA-D3-A51T-06 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.46 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A51T-06 18 59483681 59483681 G A RNF152 Nonsense_Mutation p.Q6* 0.47 TCGA-D3-A51T-06 18 59483735 59483735 G A RNF152 5'UTR 0.33 TCGA-D3-A51T-06 18 59483737 59483737 G A RNF152 5'UTR 0.32 TCGA-D3-A51T-06 18 61310838 61310838 C T SERPINB4 Splice_Site 0.45 TCGA-D3-A51T-06 18 61388181 61388181 G A SERPINB11 Missense_Mutation p.M245I 0.25 deleterious(0) probably_damaging(0.96) TCGA-D3-A51T-06 18 6243377 6243377 C T L3MBTL4 Missense_Mutation p.D126N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 18 63489473 63489473 G A CDH7 Missense_Mutation p.R261H 0.52 deleterious(0.04) benign(0.071) TCGA-D3-A51T-06 18 67836252 67836252 A T RTTN Missense_Mutation p.L510M 0.33 tolerated(0.1) benign(0.332) TCGA-D3-A51T-06 18 7231751 7231751 C T LRRC30 Silent p.I205I 0.32 TCGA-D3-A51T-06 18 8784469 8784469 C T SOGA2 Silent p.Y453Y 0.36 TCGA-D3-A51T-06 18 8784547 8784547 C T SOGA2 Silent p.L479L 0.35 TCGA-D3-A51T-06 18 905324 905324 G A ADCYAP1 5'UTR 0.35 TCGA-D3-A51T-06 18 9887472 9887472 C T TXNDC2 Silent p.S332S 0.37 TCGA-D3-A51T-06 19 10439630 10439630 G A RAVER1 Silent p.F165F 0.38 TCGA-D3-A51T-06 19 11725687 11725687 C T ZNF627 Missense_Mutation p.P59L 0.21 tolerated(0.45) benign(0.015) TCGA-D3-A51T-06 19 11944022 11944022 C T ZNF440 3'UTR 0.36 TCGA-D3-A51T-06 19 12246706 12246706 G A ZNF20 Missense_Mutation p.S6L 0.28 deleterious(0.05) benign(0.188) TCGA-D3-A51T-06 19 12490850 12490850 G A CTD-3105H18.14 3'UTR 0.29 TCGA-D3-A51T-06 19 12501361 12501361 T C ZNF799 Silent p.G617G 0.37 TCGA-D3-A51T-06 19 15770030 15770030 G A CYP4F3 Silent p.R466R 0.36 TCGA-D3-A51T-06 19 15839075 15839075 C T OR10H2 Silent p.T74T 0.41 TCGA-D3-A51T-06 19 16034826 16034826 C T CYP4F11 Silent p.Q238Q 0.42 TCGA-D3-A51T-06 19 16860808 16860808 C T NWD1 Missense_Mutation p.P452L 0.30 tolerated(0.64) benign(0.005) TCGA-D3-A51T-06 19 16980669 16980669 C T SIN3B Silent p.P767P 0.33 TCGA-D3-A51T-06 19 17370177 17370177 C T USHBP1 Missense_Mutation p.G323S 0.40 tolerated(0.23) possibly_damaging(0.858) TCGA-D3-A51T-06 19 18121020 18121020 C T ARRDC2 Missense_Mutation p.P289S 0.42 deleterious(0) probably_damaging(0.98) TCGA-D3-A51T-06 19 18376908 18376908 G A KIAA1683 Missense_Mutation p.S481F 0.37 deleterious(0) possibly_damaging(0.735) TCGA-D3-A51T-06 19 18499348 18499348 G A GDF15 Missense_Mutation p.R177Q 0.62 tolerated(0.5) benign(0.002) TCGA-D3-A51T-06 19 1881266 1881266 G A ABHD17A Silent p.S100S 0.26 TCGA-D3-A51T-06 19 19359523 19359523 C T NCAN Missense_Mutation p.P1218S 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 19 19656009 19656009 G A CILP2 Silent p.R885R 0.42 TCGA-D3-A51T-06 19 19906391 19906391 C T ZNF506 Missense_Mutation p.R102K 0.31 tolerated(0.19) benign(0.021) TCGA-D3-A51T-06 19 20806925 20806925 G A ZNF626 3'UTR 0.67 TCGA-D3-A51T-06 19 20959267 20959267 C T ZNF66 Intron 0.35 TCGA-D3-A51T-06 19 2210807 2210807 C T DOT1L Missense_Mutation p.A435V 0.22 deleterious(0.03) benign(0.001) TCGA-D3-A51T-06 19 22154175 22154175 C T ZNF208 Missense_Mutation p.G1221R 0.33 deleterious(0.02) benign(0.356) TCGA-D3-A51T-06 19 2222198 2222198 C T DOT1L Silent p.P1010P 0.28 TCGA-D3-A51T-06 19 22784242 22784242 G A AC011467.1 5'Flank 0.64 TCGA-D3-A51T-06 19 22951144 22951144 C T ZNF99 Nonsense_Mutation p.W63* 0.33 TCGA-D3-A51T-06 19 23836719 23836719 G A ZNF675 Missense_Mutation p.P339L 0.32 tolerated(0.05) probably_damaging(1) TCGA-D3-A51T-06 19 24309303 24309303 A T ZNF254 Missense_Mutation p.L167F 0.36 deleterious(0.05) benign(0.003) TCGA-D3-A51T-06 19 3527037 3527037 C T FZR1 Silent p.S149S 0.48 TCGA-D3-A51T-06 19 35510183 35510183 C T GRAMD1A Silent p.G434G 0.47 TCGA-D3-A51T-06 19 3589521 3589521 C T GIPC3 Missense_Mutation p.R225C 0.31 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A51T-06 19 36858795 36858795 G A ZFP14 5'UTR 0.57 TCGA-D3-A51T-06 19 3733899 3733899 C T TJP3 Missense_Mutation p.S298L 0.36 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 19 3905537 3905537 C T ATCAY Missense_Mutation p.S81F 0.24 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 19 39421403 39421403 C T SARS2 5'Flank 0.36 TCGA-D3-A51T-06 19 39907626 39907626 C T PLEKHG2 Missense_Mutation p.H244Y 0.34 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-D3-A51T-06 19 39911445 39911445 C T PLEKHG2 Missense_Mutation p.P451L 0.36 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A51T-06 19 40146592 40146592 G A LGALS16 5'UTR 0.42 TCGA-D3-A51T-06 19 42354586 42354586 C T DMRTC2 Intron 0.42 TCGA-D3-A51T-06 19 42462917 42462917 G A RABAC1 Silent p.F80F 0.32 TCGA-D3-A51T-06 19 42566782 42566782 G A GRIK5 Silent p.P122P 0.35 TCGA-D3-A51T-06 19 42814736 42814736 C T PRR19 Silent p.L305L 0.44 TCGA-D3-A51T-06 19 42814737 42814737 C T PRR19 Missense_Mutation p.P306S 0.44 tolerated_low_confidence(0.16) possibly_damaging(0.564) TCGA-D3-A51T-06 19 42818674 42818674 G A TMEM145 Silent p.G89G 0.43 TCGA-D3-A51T-06 19 43979573 43979573 G A PHLDB3 Missense_Mutation p.H638Y 0.51 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A51T-06 19 43979574 43979574 G A PHLDB3 Silent p.N637N 0.51 TCGA-D3-A51T-06 19 44531259 44531259 C G ZNF222 Missense_Mutation p.R43G 0.36 deleterious(0.04) possibly_damaging(0.689) TCGA-D3-A51T-06 19 44636151 44636151 G A ZNF225 Missense_Mutation p.G462R 0.37 deleterious(0) probably_damaging(0.995) TCGA-D3-A51T-06 19 44890669 44890669 G A ZNF285 Missense_Mutation p.H580Y 0.28 deleterious(0) possibly_damaging(0.799) TCGA-D3-A51T-06 19 44934627 44934627 T G ZNF229 Missense_Mutation p.E110A 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A51T-06 19 44934628 44934628 C T ZNF229 Missense_Mutation p.E110K 0.42 tolerated(0.48) probably_damaging(0.968) TCGA-D3-A51T-06 19 4512688 4512688 G A PLIN4 Silent p.I414I 0.72 TCGA-D3-A51T-06 19 4513345 4513345 G A PLIN4 Silent p.V195V 0.39 TCGA-D3-A51T-06 19 45368641 45368641 G C PVRL2 Missense_Mutation p.V68L 0.36 tolerated(0.17) benign(0.366) TCGA-D3-A51T-06 19 4548329 4548329 C T SEMA6B Missense_Mutation p.G467E 0.41 tolerated(0.22) benign(0.003) TCGA-D3-A51T-06 19 46180604 46180604 C T GIPR Missense_Mutation p.P273S 0.22 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A51T-06 19 47425236 47425236 G A ARHGAP35 Missense_Mutation p.E1102K 0.38 deleterious(0.01) possibly_damaging(0.782) TCGA-D3-A51T-06 19 47880400 47880400 C T DHX34 Silent p.F881F 0.36 TCGA-D3-A51T-06 19 48522991 48522991 C T ELSPBP1 Missense_Mutation p.S124F 0.39 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 19 49793315 49793315 G A SLC6A16 3'UTR 0.44 TCGA-D3-A51T-06 19 50149388 50149388 C T SCAF1 Nonsense_Mutation p.R64* 0.57 TCGA-D3-A51T-06 19 50248503 50248503 C T TSKS Silent p.R381R 0.11 TCGA-D3-A51T-06 19 50248559 50248559 C T TSKS Missense_Mutation p.D363N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A51T-06 19 50248635 50248635 C T TSKS Silent p.L337L 0.23 TCGA-D3-A51T-06 19 50250648 50250648 C T TSKS Missense_Mutation p.E221K 0.11 deleterious(0) possibly_damaging(0.539) TCGA-D3-A51T-06 19 50374934 50374934 G A AKT1S1 Missense_Mutation p.T186I 0.48 tolerated(0.14) benign(0) TCGA-D3-A51T-06 19 50918104 50918104 G A POLD1 Silent p.K807K 0.33 TCGA-D3-A51T-06 19 50958438 50958438 C T MYBPC2 Silent p.T696T 0.41 TCGA-D3-A51T-06 19 51171752 51171752 G A SHANK1 Silent p.I1155I 0.19 TCGA-D3-A51T-06 19 51768743 51768743 G A SIGLECL1 Silent p.V48V 0.45 TCGA-D3-A51T-06 19 52217175 52217175 G A HAS1 Silent p.F414F 0.24 TCGA-D3-A51T-06 19 5243950 5243950 G A PTPRS Missense_Mutation p.P511L 0.36 deleterious(0) probably_damaging(0.99) TCGA-D3-A51T-06 19 52716281 52716281 C T PPP2R1A Missense_Mutation p.A242V 0.26 tolerated(0.23) benign(0.002) TCGA-D3-A51T-06 19 54197697 54197697 G A MIR526B RNA 0.43 TCGA-D3-A51T-06 19 54200784 54200784 G A MIR525 5'Flank 0.30 TCGA-D3-A51T-06 19 54265621 54265621 G A MIR519A2 RNA 0.38 TCGA-D3-A51T-06 19 54515331 54515331 G A CACNG6 Missense_Mutation p.G224D 0.35 deleterious(0.01) possibly_damaging(0.828) TCGA-D3-A51T-06 19 54780263 54780263 C T LILRB2 Missense_Mutation p.E511K 0.26 tolerated(0.33) benign(0.421) TCGA-D3-A51T-06 19 54804137 54804137 C T LILRA3 Intron 0.86 TCGA-D3-A51T-06 19 54822799 54822799 G A LILRA5 Silent p.F199F 0.41 TCGA-D3-A51T-06 19 54849240 54849240 C T LILRA4 Missense_Mutation p.E208K 0.26 tolerated(0.81) benign(0.054) TCGA-D3-A51T-06 19 55145110 55145110 C T LILRB1 Missense_Mutation p.S428F 0.22 deleterious(0.01) benign(0.026) TCGA-D3-A51T-06 19 55741983 55741983 G A PPP6R1 Silent p.S880S 0.35 TCGA-D3-A51T-06 19 56047633 56047633 G A SBK2 Missense_Mutation p.P10L 0.52 tolerated_low_confidence(0.74) unknown(0) TCGA-D3-A51T-06 19 56243633 56243633 C T NLRP9 Missense_Mutation p.E522K 0.47 deleterious(0.02) possibly_damaging(0.788) TCGA-D3-A51T-06 19 56424312 56424312 C T NLRP13 Missense_Mutation p.D291N 0.52 tolerated(0.15) benign(0.082) TCGA-D3-A51T-06 19 56424571 56424571 G A NLRP13 Silent p.I204I 0.42 TCGA-D3-A51T-06 19 57089265 57089265 T A ZNF470 Missense_Mutation p.F490I 0.42 deleterious(0) probably_damaging(0.993) TCGA-D3-A51T-06 19 57176221 57176221 C T ZNF835 Missense_Mutation p.G116R 0.37 deleterious(0.03) probably_damaging(0.982) TCGA-D3-A51T-06 19 57286272 57286272 C T ZIM2 Silent p.R456R 0.36 TCGA-D3-A51T-06 19 57325615 57325615 C T PEG3 Missense_Mutation p.V1399M 0.36 deleterious(0.02) possibly_damaging(0.854) TCGA-D3-A51T-06 19 57325756 57325756 C T PEG3 Missense_Mutation p.E1352K 0.51 tolerated(1) benign(0.002) TCGA-D3-A51T-06 19 57640389 57640389 G A USP29 Missense_Mutation p.D116N 0.29 deleterious(0.01) possibly_damaging(0.454) TCGA-D3-A51T-06 19 57642220 57642220 G A USP29 Missense_Mutation p.G726E 0.39 tolerated(1) benign(0.127) TCGA-D3-A51T-06 19 57642615 57642615 G A USP29 Missense_Mutation p.D858N 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 19 58084161 58084161 G A ZNF416 Nonsense_Mutation p.R371* 0.37 TCGA-D3-A51T-06 19 58152153 58152153 C T ZNF211 Missense_Mutation p.S165F 0.44 tolerated(0.1) benign(0.079) TCGA-D3-A51T-06 19 5844628 5844628 G A FUT3 Missense_Mutation p.P75S 0.47 tolerated(0.59) possibly_damaging(0.559) TCGA-D3-A51T-06 19 59011961 59011961 T C SLC27A5 Missense_Mutation p.Y432C 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 19 6147630 6147630 C T ACSBG2 Silent p.L81L 0.34 TCGA-D3-A51T-06 19 6820818 6820818 G A VAV1 Missense_Mutation p.D104N 0.43 tolerated(0.15) probably_damaging(0.999) TCGA-D3-A51T-06 19 7689290 7689290 G A XAB2 Silent p.T288T 0.33 TCGA-D3-A51T-06 19 7809008 7809008 G A CD209 Missense_Mutation p.S333L 0.22 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 19 9059370 9059370 C T MUC16 Missense_Mutation p.R9359K 0.44 unknown(0) TCGA-D3-A51T-06 19 9063547 9063547 T C MUC16 Missense_Mutation p.K7967E 0.39 unknown(0) TCGA-D3-A51T-06 19 9070708 9070708 G A MUC16 Missense_Mutation p.L5580F 0.38 unknown(0) TCGA-D3-A51T-06 19 9071190 9071190 G A MUC16 Missense_Mutation p.S5419F 0.35 unknown(0) TCGA-D3-A51T-06 19 9076306 9076306 G A MUC16 Missense_Mutation p.H3714Y 0.42 unknown(0) TCGA-D3-A51T-06 19 9077720 9077720 C T MUC16 Silent p.V3242V 0.43 TCGA-D3-A51T-06 19 9086692 9086692 G A MUC16 Missense_Mutation p.T1708I 0.33 unknown(0) TCGA-D3-A51T-06 19 9213386 9213386 G A OR7G2 Silent p.F199F 0.49 TCGA-D3-A51T-06 19 9578713 9578713 G A ZNF560 Nonsense_Mutation p.Q304* 0.33 TCGA-D3-A51T-06 1 101186131 101186131 C T VCAM1 Missense_Mutation p.P55L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 1 104120425 104120425 G A AMY2B Missense_Mutation p.G435E 0.32 tolerated(0.09) probably_damaging(0.99) TCGA-D3-A51T-06 1 10705065 10705065 G A CASZ1 Silent p.L1259L 0.38 TCGA-D3-A51T-06 1 110460044 110460044 C T CSF1 Silent p.L119L 0.33 TCGA-D3-A51T-06 1 11103511 11103511 G A MASP2 Missense_Mutation p.S209F 0.33 tolerated(0.05) probably_damaging(0.935) TCGA-D3-A51T-06 1 111434995 111434995 G A CD53 Missense_Mutation p.G31E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 111494201 111494201 A T LRIF1 Silent p.A435A 0.40 TCGA-D3-A51T-06 1 112019446 112019446 G T C1orf162 Missense_Mutation p.A22S 0.38 tolerated(0.11) possibly_damaging(0.866) TCGA-D3-A51T-06 1 112303645 112303645 C T DDX20 Missense_Mutation p.P287L 0.27 tolerated(0.06) possibly_damaging(0.886) TCGA-D3-A51T-06 1 112999513 112999513 C T CTTNBP2NL Nonsense_Mutation p.Q467* 0.41 TCGA-D3-A51T-06 1 113232121 113232121 C T MOV10 Silent p.R142R 0.39 TCGA-D3-A51T-06 1 113232122 113232122 C T MOV10 Silent p.L143L 0.39 TCGA-D3-A51T-06 1 1140775 1140775 G A TNFRSF18 Silent p.P95P 0.56 TCGA-D3-A51T-06 1 1140777 1140777 G A TNFRSF18 Missense_Mutation p.P95S 0.53 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-D3-A51T-06 1 115488946 115488946 G A SYCP1 Missense_Mutation p.E731K 0.29 deleterious(0) probably_damaging(0.969) TCGA-D3-A51T-06 1 118535150 118535150 T G SPAG17 Missense_Mutation p.Q1767P 0.47 deleterious(0) probably_damaging(0.992) TCGA-D3-A51T-06 1 120471786 120471786 G A NOTCH2 Silent p.C1235C 0.38 TCGA-D3-A51T-06 1 12082318 12082318 C T MIIP Missense_Mutation p.S94F 0.48 tolerated(0.07) probably_damaging(0.989) TCGA-D3-A51T-06 1 12364662 12364662 T C VPS13D Missense_Mutation p.F2106L 0.47 benign(0.001) TCGA-D3-A51T-06 1 12856083 12856083 A C PRAMEF1 Missense_Mutation p.T455P 0.11 tolerated(0.18) benign(0.369) TCGA-D3-A51T-06 1 12955399 12955399 G A PRAMEF10 Missense_Mutation p.R94C 0.34 tolerated(0.11) benign(0.073) TCGA-D3-A51T-06 1 13669144 13669144 C T PRAMEF14 Missense_Mutation p.D396N 0.36 tolerated(1) benign(0.004) TCGA-D3-A51T-06 1 1389811 1389811 G A ATAD3C Silent p.L103L 0.60 TCGA-D3-A51T-06 1 1389812 1389812 G A ATAD3C Missense_Mutation p.G104R 0.60 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A51T-06 1 144865903 144865903 C T PDE4DIP Missense_Mutation p.G1893S 0.16 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A51T-06 1 144874824 144874824 G A PDE4DIP Missense_Mutation p.S1595F 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-D3-A51T-06 1 144886128 144886128 C T PDE4DIP Missense_Mutation p.E1036K 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A51T-06 1 149762847 149762847 G A FCGR1A Missense_Mutation p.G300E 0.17 deleterious(0) probably_damaging(0.972) TCGA-D3-A51T-06 1 151214995 151214995 C T PIP5K1A Missense_Mutation p.P531L 0.33 tolerated_low_confidence(0.13) benign(0.004) TCGA-D3-A51T-06 1 151214996 151214996 C T PIP5K1A Silent p.P531P 0.32 TCGA-D3-A51T-06 1 151732460 151732460 G A MRPL9 3'UTR 0.41 TCGA-D3-A51T-06 1 152059796 152059796 C T TCHHL1 Nonsense_Mutation p.W121* 0.43 TCGA-D3-A51T-06 1 152127548 152127548 C T RPTN Missense_Mutation p.G676E 0.42 tolerated(0.44) benign(0.038) TCGA-D3-A51T-06 1 152279850 152279850 G A FLG Silent p.S2504S 0.45 TCGA-D3-A51T-06 1 152326071 152326071 C T FLG2 Silent p.E1397E 0.32 TCGA-D3-A51T-06 1 152383387 152383387 G A CRNN Silent p.V57V 0.29 TCGA-D3-A51T-06 1 152538380 152538380 C T LCE3E 3'UTR 0.36 TCGA-D3-A51T-06 1 152882675 152882675 G A IVL Silent p.L134L 0.54 TCGA-D3-A51T-06 1 154207139 154207139 G A UBAP2L Missense_Mutation p.E118K 0.39 tolerated(0.55) unknown(0) TCGA-D3-A51T-06 1 155028558 155028558 C T ADAM15 Silent p.F249F 0.30 TCGA-D3-A51T-06 1 155230365 155230365 G A SCAMP3 Missense_Mutation p.P77L 0.28 deleterious(0) possibly_damaging(0.821) TCGA-D3-A51T-06 1 155263367 155263367 C T PKLR Missense_Mutation p.M377I 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 1 155736000 155736000 G A GON4L Silent p.S1088S 0.40 TCGA-D3-A51T-06 1 156280936 156280936 G A CCT3 Silent p.L402L 0.52 TCGA-D3-A51T-06 1 156593658 156593658 C T HAPLN2 Missense_Mutation p.R49C 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 1569976 1569976 C T MMP23B Missense_Mutation p.S383F 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 1 157548298 157548298 C T FCRL4 Silent p.E465E 0.39 TCGA-D3-A51T-06 1 157559020 157559020 T C FCRL4 Missense_Mutation p.N94S 0.35 tolerated(0.1) benign(0.023) TCGA-D3-A51T-06 1 158369155 158369155 G A OR10T2 Silent p.L34L 0.55 TCGA-D3-A51T-06 1 158369201 158369201 G A OR10T2 Missense_Mutation p.S19F 0.39 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A51T-06 1 158435860 158435860 C T OR10K1 Missense_Mutation p.S170F 0.31 tolerated(0.08) possibly_damaging(0.79) TCGA-D3-A51T-06 1 158435994 158435994 C T OR10K1 Silent p.L215L 0.45 TCGA-D3-A51T-06 1 158906794 158906794 G A PYHIN1 Missense_Mutation p.D32N 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A51T-06 1 160054455 160054455 C T KCNJ9 Missense_Mutation p.S212L 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 1 160276187 160276187 G A COPA Nonsense_Mutation p.R467* 0.40 TCGA-D3-A51T-06 1 160971072 160971072 C T F11R Intron 0.36 TCGA-D3-A51T-06 1 161042564 161042564 G A PVRL4 Nonsense_Mutation p.Q474* 0.40 TCGA-D3-A51T-06 1 161161902 161161902 C T ADAMTS4 Silent p.G680G 0.29 TCGA-D3-A51T-06 1 161600943 161600943 C T FCGR3B Missense_Mutation p.G17D 0.53 tolerated(0.95) benign(0.026) TCGA-D3-A51T-06 1 170521559 170521559 C T GORAB Missense_Mutation p.P381S 0.35 tolerated_low_confidence(0.28) benign(0.121) TCGA-D3-A51T-06 1 17084250 17084250 T A MST1L Intron 0.10 TCGA-D3-A51T-06 1 171227252 171227252 G A FMO1 Missense_Mutation p.G9E 0.24 deleterious(0) probably_damaging(0.965) TCGA-D3-A51T-06 1 171540486 171540486 C T PRRC2C Missense_Mutation p.P2225S 0.30 benign(0.198) TCGA-D3-A51T-06 1 171605754 171605754 G A MYOC Missense_Mutation p.P276S 0.37 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A51T-06 1 172100375 172100375 G A DNM3 Missense_Mutation p.G536R 0.38 tolerated(0.07) benign(0.05) TCGA-D3-A51T-06 1 173570932 173570932 C T SLC9C2 5'UTR 0.33 TCGA-D3-A51T-06 1 173616117 173616117 G A ANKRD45 Missense_Mutation p.R122C 0.25 deleterious(0) benign(0.118) TCGA-D3-A51T-06 1 175362997 175362997 C T TNR Silent p.T425T 0.39 TCGA-D3-A51T-06 1 176525597 176525597 G A PAPPA2 Missense_Mutation p.G47R 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A51T-06 1 185153439 185153439 C T SWT1 Silent p.L401L 0.38 TCGA-D3-A51T-06 1 186413501 186413501 C T PDC Silent p.L117L 0.33 TCGA-D3-A51T-06 1 186946727 186946727 A G PLA2G4A Silent p.E589E 0.28 TCGA-D3-A51T-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.43 tolerated(0.08) benign(0.001) TCGA-D3-A51T-06 1 192780138 192780138 T C RGS2 Missense_Mutation p.L101S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 19486730 19486730 G A UBR4 Missense_Mutation p.L1818F 0.60 possibly_damaging(0.897) TCGA-D3-A51T-06 1 196577388 196577388 G A KCNT2 Nonsense_Mutation p.R18* 0.37 TCGA-D3-A51T-06 1 196748929 196748929 A T CFHR3 Nonsense_Mutation p.K86* 0.36 TCGA-D3-A51T-06 1 196794618 196794618 G A CFHR1 Missense_Mutation p.D24N 0.25 tolerated(0.13) unknown(0) TCGA-D3-A51T-06 1 19683223 19683223 G A CAPZB Missense_Mutation p.A165V 0.35 tolerated(0.06) possibly_damaging(0.61) TCGA-D3-A51T-06 1 196879546 196879546 G A CFHR4 Missense_Mutation p.G311E 0.45 tolerated(1) probably_damaging(0.947) TCGA-D3-A51T-06 1 196927044 196927044 C T CFHR2 Missense_Mutation p.P152S 0.28 deleterious(0) possibly_damaging(0.824) TCGA-D3-A51T-06 1 196927045 196927045 C T CFHR2 Missense_Mutation p.P152L 0.27 deleterious(0) probably_damaging(0.95) TCGA-D3-A51T-06 1 196967406 196967406 G A CFHR5 Silent p.G373G 0.39 TCGA-D3-A51T-06 1 197102509 197102509 C T ASPM Missense_Mutation p.R797Q 0.38 deleterious(0) probably_damaging(0.957) TCGA-D3-A51T-06 1 197404341 197404341 C T CRB1 Silent p.F1116F 0.40 TCGA-D3-A51T-06 1 198678839 198678839 G A PTPRC Missense_Mutation p.E353K 0.38 tolerated(0.76) benign(0.002) TCGA-D3-A51T-06 1 201009205 201009205 C T CACNA1S Silent p.L1792L 0.38 TCGA-D3-A51T-06 1 201751991 201751991 C T NAV1 Missense_Mutation p.P784L 0.34 deleterious(0.05) benign(0.198) TCGA-D3-A51T-06 1 20231456 20231456 C T OTUD3 Missense_Mutation p.R271W 0.37 deleterious(0) benign(0.209) TCGA-D3-A51T-06 1 202396218 202396218 G A PPP1R12B Nonsense_Mutation p.W251* 0.33 TCGA-D3-A51T-06 1 202920264 202920264 G A ADIPOR1 5'UTR 0.56 TCGA-D3-A51T-06 1 20302152 20302152 G A PLA2G2A 3'UTR 0.48 TCGA-D3-A51T-06 1 205238605 205238605 C T TMCC2 Silent p.P425P 0.29 TCGA-D3-A51T-06 1 205272820 205272820 G A NUAK2 Silent p.L549L 0.48 TCGA-D3-A51T-06 1 205499447 205499447 C T CDK18 Silent p.L458L 0.36 TCGA-D3-A51T-06 1 206772888 206772888 G A EIF2D Silent p.H377H 0.38 TCGA-D3-A51T-06 1 207644123 207644123 G A CR2 Missense_Mutation p.E422K 0.26 tolerated(0.12) benign(0.12) TCGA-D3-A51T-06 1 209907730 209907730 G A HSD11B1 Missense_Mutation p.G248E 0.54 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 1 215814034 215814034 G A USH2A Missense_Mutation p.S4945F 0.32 probably_damaging(0.982) TCGA-D3-A51T-06 1 215848702 215848702 T A USH2A Missense_Mutation p.K4184I 0.50 possibly_damaging(0.824) TCGA-D3-A51T-06 1 215916657 215916657 G A USH2A Missense_Mutation p.P3804S 0.22 probably_damaging(0.971) TCGA-D3-A51T-06 1 216052118 216052118 C T USH2A Missense_Mutation p.G2849E 0.37 probably_damaging(1) TCGA-D3-A51T-06 1 216405466 216405466 G A USH2A Missense_Mutation p.S941F 0.50 possibly_damaging(0.464) TCGA-D3-A51T-06 1 218578520 218578520 C T TGFB2 Missense_Mutation p.P147L 0.33 tolerated(0.29) benign(0.013) TCGA-D3-A51T-06 1 219347257 219347257 C T LYPLAL1 Silent p.L9L 0.24 TCGA-D3-A51T-06 1 220368696 220368696 G A RAB3GAP2 Silent p.S328S 0.41 TCGA-D3-A51T-06 1 224345206 224345206 G T FBXO28 Missense_Mutation p.V289L 0.40 tolerated(0.35) benign(0.07) TCGA-D3-A51T-06 1 226784624 226784624 C T C1orf95 Silent p.I108I 0.39 TCGA-D3-A51T-06 1 226924376 226924376 G A ITPKB Missense_Mutation p.P262S 0.24 tolerated_low_confidence(0.12) benign(0.003) TCGA-D3-A51T-06 1 227077815 227077815 C T PSEN2 Silent p.F289F 0.35 TCGA-D3-A51T-06 1 228481963 228481963 G A OBSCN Missense_Mutation p.G4177R 0.38 probably_damaging(1) TCGA-D3-A51T-06 1 228548368 228548368 C T OBSCN Intron 0.33 TCGA-D3-A51T-06 1 22902907 22902907 G A EPHA8 Silent p.K119K 0.36 TCGA-D3-A51T-06 1 22987647 22987647 G A C1QB Missense_Mutation p.R177Q 0.30 deleterious(0.03) possibly_damaging(0.74) TCGA-D3-A51T-06 1 230846563 230846563 G A AGT Missense_Mutation p.P12S 0.41 tolerated(0.13) benign(0.08) TCGA-D3-A51T-06 1 233225830 233225830 C T PCNXL2 Silent p.V1351V 0.26 TCGA-D3-A51T-06 1 233515109 233515109 A T MLK4 Missense_Mutation p.E786V 0.44 tolerated(0.09) benign(0.008) TCGA-D3-A51T-06 1 235617519 235617519 C T B3GALNT2 Silent p.K420K 0.38 TCGA-D3-A51T-06 1 236143953 236143953 C T NID1 Silent p.G1076G 0.25 TCGA-D3-A51T-06 1 236143954 236143954 C T NID1 Splice_Site p.X1076_splice 0.27 TCGA-D3-A51T-06 1 237880599 237880599 C T RYR2 Silent p.P3475P 0.20 TCGA-D3-A51T-06 1 237972324 237972324 G A RYR2 Missense_Mutation p.D4808N 0.34 probably_damaging(0.948) TCGA-D3-A51T-06 1 240286642 240286642 T C FMN2 Silent p.F593F 0.42 TCGA-D3-A51T-06 1 240341310 240341310 C T FMN2 Silent p.S624S 0.34 TCGA-D3-A51T-06 1 240371221 240371221 C T FMN2 Missense_Mutation p.P1037S 0.30 unknown(0) TCGA-D3-A51T-06 1 241031894 241031894 C A RGS7 Missense_Mutation p.R201M 0.24 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 1 241094014 241094014 G A RGS7 Intron 0.31 TCGA-D3-A51T-06 1 247588695 247588695 C T NLRP3 Silent p.F650F 0.44 TCGA-D3-A51T-06 1 247752474 247752474 G A OR2G2 Silent p.R271R 0.31 TCGA-D3-A51T-06 1 247769190 247769190 C T OR2G3 Silent p.L101L 0.35 TCGA-D3-A51T-06 1 24795649 24795649 G C NIPAL3 Missense_Mutation p.V399L 0.38 tolerated_low_confidence(0.09) benign(0.07) TCGA-D3-A51T-06 1 248309250 248309250 C T OR2M5 Silent p.S267S 0.34 TCGA-D3-A51T-06 1 248458105 248458105 C T OR2T12 Missense_Mutation p.R259K 0.31 tolerated(0.13) benign(0.443) TCGA-D3-A51T-06 1 248685814 248685814 C T OR2G6 Silent p.I289I 0.47 TCGA-D3-A51T-06 1 26515114 26515114 C T CNKSR1 Missense_Mutation p.P539L 0.39 tolerated(0.08) benign(0.418) TCGA-D3-A51T-06 1 27657221 27657221 C T TMEM222 Missense_Mutation p.P69S 0.38 deleterious(0) probably_damaging(0.981) TCGA-D3-A51T-06 1 27949654 27949654 C T FGR Silent p.G76G 0.18 TCGA-D3-A51T-06 1 28864371 28864371 C T RCC1 Missense_Mutation p.T404I 0.40 deleterious(0) possibly_damaging(0.686) TCGA-D3-A51T-06 1 29642514 29642514 G A PTPRU Missense_Mutation p.E1132K 0.53 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 1 31532132 31532132 C A PUM1 Silent p.G94G 0.48 TCGA-D3-A51T-06 1 3160684 3160684 G A PRDM16 Missense_Mutation p.E141K 0.41 tolerated_low_confidence(0.21) benign(0.075) TCGA-D3-A51T-06 1 32280509 32280509 G A SPOCD1 Silent p.L142L 0.32 TCGA-D3-A51T-06 1 32745802 32745802 C T LCK Missense_Mutation p.P440S 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 3328996 3328996 C T PRDM16 Silent p.L745L 0.31 TCGA-D3-A51T-06 1 33360931 33360931 C T TMEM54 Nonsense_Mutation p.W190* 0.29 TCGA-D3-A51T-06 1 33402702 33402702 G T RNF19B Missense_Mutation p.P635H 0.34 tolerated_low_confidence(0.12) benign(0.361) TCGA-D3-A51T-06 1 33402703 33402703 G T RNF19B Missense_Mutation p.P635T 0.34 tolerated_low_confidence(0.39) benign(0.108) TCGA-D3-A51T-06 1 33585595 33585595 C T ADC Intron 0.56 TCGA-D3-A51T-06 1 33746006 33746006 C T ZNF362 Missense_Mutation p.P211S 0.37 tolerated(0.12) probably_damaging(0.998) TCGA-D3-A51T-06 1 34008484 34008484 C T CSMD2 Missense_Mutation p.G2894E 0.52 deleterious(0.02) probably_damaging(1) TCGA-D3-A51T-06 1 34082532 34082532 C T CSMD2 Nonsense_Mutation p.W1957* 0.43 TCGA-D3-A51T-06 1 34083126 34083126 G A CSMD2 Silent p.F1933F 0.40 TCGA-D3-A51T-06 1 34089009 34089009 C T CSMD2 Missense_Mutation p.G1855S 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 1 34174862 34174862 G A CSMD2 Intron 0.50 TCGA-D3-A51T-06 1 35334369 35334369 C T DLGAP3 Nonsense_Mutation p.W774* 0.40 TCGA-D3-A51T-06 1 38003598 38003598 G A SNIP1 Silent p.T314T 0.42 TCGA-D3-A51T-06 1 39377005 39377005 C T RHBDL2 Missense_Mutation p.G166E 0.44 deleterious(0) probably_damaging(0.973) TCGA-D3-A51T-06 1 41579128 41579128 G A SCMH1 Missense_Mutation p.P181L 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 44463193 44463193 G A SLC6A9 3'Flank 0.35 TCGA-D3-A51T-06 1 47603141 47603141 C T CYP4A22 5'UTR 0.27 TCGA-D3-A51T-06 1 52277704 52277704 G A NRD1 Missense_Mutation p.L649F 0.33 deleterious(0) probably_damaging(0.992) TCGA-D3-A51T-06 1 54665994 54665994 G A MRPL37 Silent p.P26P 0.41 TCGA-D3-A51T-06 1 57169798 57169798 G A PRKAA2 Missense_Mutation p.D315N 0.46 tolerated(0.25) benign(0.001) TCGA-D3-A51T-06 1 57206380 57206380 C T C1orf168 Missense_Mutation p.E565K 0.40 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 1 57756691 57756691 C T DAB1 Silent p.E4E 0.44 TCGA-D3-A51T-06 1 70493873 70493873 G A LRRC7 Missense_Mutation p.R567Q 0.38 deleterious(0.04) probably_damaging(0.99) TCGA-D3-A51T-06 1 70728337 70728337 G A ANKRD13C 3'UTR 0.47 TCGA-D3-A51T-06 1 71318529 71318529 C T PTGER3 Missense_Mutation p.G373E 0.33 deleterious_low_confidence(0) benign(0.044) TCGA-D3-A51T-06 1 75037700 75037700 C T C1orf173 Missense_Mutation p.G1232R 0.45 tolerated(0.53) possibly_damaging(0.667) TCGA-D3-A51T-06 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.43 TCGA-D3-A51T-06 1 75078449 75078449 T G C1orf173 Missense_Mutation p.S349R 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 1 75097465 75097465 C T C1orf173 Missense_Mutation p.E251K 0.46 deleterious(0.02) possibly_damaging(0.89) TCGA-D3-A51T-06 1 75684294 75684294 G A SLC44A5 Silent p.F470F 0.36 TCGA-D3-A51T-06 1 78958666 78958666 G A PTGFR Missense_Mutation p.G80S 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 1 82447616 82447616 C T LPHN2 Nonsense_Mutation p.Q1063* 0.37 TCGA-D3-A51T-06 1 8384476 8384476 G A SLC45A1 Silent p.T29T 0.42 TCGA-D3-A51T-06 1 8384477 8384477 G A SLC45A1 Missense_Mutation p.G30S 0.44 tolerated_low_confidence(0.47) benign(0.004) TCGA-D3-A51T-06 1 8418476 8418476 G A RERE Silent p.P1373P 0.20 TCGA-D3-A51T-06 1 8418477 8418477 G A RERE Missense_Mutation p.P1373L 0.25 unknown(0) TCGA-D3-A51T-06 1 86512515 86512515 C T COL24A1 Missense_Mutation p.G648E 0.36 deleterious(0) probably_damaging(0.984) TCGA-D3-A51T-06 1 894650 894650 C T NOC2L 5'UTR 0.38 TCGA-D3-A51T-06 1 92789349 92789349 C T RPAP2 Missense_Mutation p.P291L 0.32 deleterious(0.04) probably_damaging(1) TCGA-D3-A51T-06 1 94014865 94014865 C T FNBP1L Silent p.N511N 0.20 TCGA-D3-A51T-06 1 94643191 94643191 C T ARHGAP29 Missense_Mutation p.G961E 0.49 tolerated(1) benign(0.001) TCGA-D3-A51T-06 1 94645372 94645372 T C ARHGAP29 Missense_Mutation p.N797D 0.32 tolerated(0.12) possibly_damaging(0.676) TCGA-D3-A51T-06 1 97544576 97544576 C T DPYD Missense_Mutation p.E1012K 0.29 tolerated(0.8) benign(0) TCGA-D3-A51T-06 1 98205983 98205983 C T DPYD Missense_Mutation p.D96N 0.48 deleterious(0.04) possibly_damaging(0.594) TCGA-D3-A51T-06 20 10280055 10280055 G A SNAP25 Missense_Mutation p.E183K 0.49 tolerated(0.35) benign(0.226) TCGA-D3-A51T-06 20 10286872 10286872 A T SNAP25 3'UTR 0.50 TCGA-D3-A51T-06 20 13971249 13971249 T G SEL1L2 5'UTR 0.24 TCGA-D3-A51T-06 20 14306245 14306245 G T FLRT3 Nonsense_Mutation p.Y636* 0.38 TCGA-D3-A51T-06 20 1456749 1456749 G A SIRPB2 3'UTR 0.23 TCGA-D3-A51T-06 20 23860231 23860231 C T CST5 Missense_Mutation p.R28K 0.42 tolerated(1) benign(0.002) TCGA-D3-A51T-06 20 2446398 2446398 C T SNRPB Missense_Mutation p.E75K 0.48 tolerated(0.05) possibly_damaging(0.479) TCGA-D3-A51T-06 20 2465038 2465038 G A ZNF343 Missense_Mutation p.S190L 0.42 tolerated(0.33) benign(0.015) TCGA-D3-A51T-06 20 2591196 2591196 G A TMC2 Silent p.G515G 0.42 TCGA-D3-A51T-06 20 2779094 2779094 G A CPXM1 Nonsense_Mutation p.R144* 0.38 TCGA-D3-A51T-06 20 35240675 35240675 C T C20orf24 3'UTR 0.57 TCGA-D3-A51T-06 20 35865053 35865053 C T RPN2 Silent p.I608I 0.53 TCGA-D3-A51T-06 20 409599 409599 T C RBCK1 Missense_Mutation p.M438T 0.38 deleterious(0) benign(0.261) TCGA-D3-A51T-06 20 41306741 41306741 C T PTPRT Nonsense_Mutation p.W306* 0.41 TCGA-D3-A51T-06 20 42089646 42089646 C T SRSF6 Silent p.S326S 0.46 TCGA-D3-A51T-06 20 42163550 42163550 C T L3MBTL1 Missense_Mutation p.S576F 0.32 deleterious(0) probably_damaging(0.94) TCGA-D3-A51T-06 20 42635279 42635279 G A TOX2 Silent p.G86G 0.33 TCGA-D3-A51T-06 20 43384679 43384679 C T RIMS4 3'UTR 0.22 TCGA-D3-A51T-06 20 43836177 43836177 G A SEMG1 Missense_Mutation p.R80Q 0.39 tolerated(0.45) benign(0.009) TCGA-D3-A51T-06 20 43926885 43926885 G A MATN4 Missense_Mutation p.R451C 0.52 probably_damaging(0.994) TCGA-D3-A51T-06 20 44168017 44168017 C T WFDC6 Silent p.L10L 0.35 TCGA-D3-A51T-06 20 44665919 44665919 C T SLC12A5 Silent p.S192S 0.31 TCGA-D3-A51T-06 20 44815246 44815246 G A CDH22 Silent p.F548F 0.38 TCGA-D3-A51T-06 20 44984496 44984496 G A SLC35C2 Missense_Mutation p.S118F 0.45 deleterious(0) probably_damaging(0.992) TCGA-D3-A51T-06 20 45023111 45023111 G A ELMO2 Missense_Mutation p.P4L 0.30 tolerated(0.1) benign(0.003) TCGA-D3-A51T-06 20 57244505 57244505 C T STX16 Silent p.L184L 0.22 TCGA-D3-A51T-06 20 57430165 57430165 C T GNAS Silent p.A615A 0.41 TCGA-D3-A51T-06 20 60419818 60419818 C T CDH4 Missense_Mutation p.S224F 0.58 deleterious(0.01) benign(0.436) TCGA-D3-A51T-06 20 61041534 61041534 G A GATA5 Missense_Mutation p.S258L 0.38 deleterious(0) benign(0.093) TCGA-D3-A51T-06 20 61537180 61537180 G A DIDO1 Intron 0.38 TCGA-D3-A51T-06 20 61574527 61574527 C T GID8 Missense_Mutation p.H103Y 0.30 deleterious(0.03) benign(0.314) TCGA-D3-A51T-06 20 62076129 62076129 G A KCNQ2 Silent p.V191V 0.23 TCGA-D3-A51T-06 20 62328306 62328306 C T RTEL1 3'Flank 0.38 TCGA-D3-A51T-06 20 62328307 62328307 C T TNFRSF6B Missense_Mutation p.R63C 0.41 deleterious(0.04) possibly_damaging(0.475) TCGA-D3-A51T-06 20 62373342 62373342 C T SLC2A4RG Missense_Mutation p.P171L 0.29 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 20 62705374 62705374 C T RGS19 Silent p.R162R 0.45 TCGA-D3-A51T-06 20 62737457 62737457 C T NPBWR2 Missense_Mutation p.R243Q 0.32 tolerated(0.22) benign(0.027) TCGA-D3-A51T-06 20 744300 744300 G A SLC52A3 Silent p.T305T 0.37 TCGA-D3-A51T-06 20 7915258 7915258 G A HAO1 Silent p.L54L 0.38 TCGA-D3-A51T-06 20 8639324 8639324 G A PLCB1 Missense_Mutation p.E279K 0.35 deleterious(0) probably_damaging(0.964) TCGA-D3-A51T-06 20 9400510 9400510 C T PLCB4 Missense_Mutation p.S691F 0.36 deleterious(0) probably_damaging(0.988) TCGA-D3-A51T-06 21 10951344 10951344 G A TPTE Missense_Mutation p.P123L 0.24 deleterious(0.04) benign(0.025) TCGA-D3-A51T-06 21 10998311 10998311 C T TPTE RNA 0.20 TCGA-D3-A51T-06 21 27071098 27071098 G A JAM2 Nonsense_Mutation p.W168* 0.48 TCGA-D3-A51T-06 21 27141472 27141472 C T GABPA Missense_Mutation p.H432Y 0.62 deleterious_low_confidence(0.03) benign(0.34) TCGA-D3-A51T-06 21 35743195 35743195 G A KCNE2 3'UTR 0.71 TCGA-D3-A51T-06 21 38462568 38462568 T C TTC3 Silent p.I154I 0.54 TCGA-D3-A51T-06 21 41539195 41539195 C T DSCAM Missense_Mutation p.E990K 0.71 deleterious(0.01) benign(0.07) TCGA-D3-A51T-06 21 41719783 41719783 C T DSCAM Missense_Mutation p.D342N 0.69 tolerated(0.43) benign(0.284) TCGA-D3-A51T-06 21 43896020 43896020 C T RSPH1 Missense_Mutation p.D289N 0.40 deleterious_low_confidence(0) benign(0.018) TCGA-D3-A51T-06 21 44486419 44486419 C T CBS Missense_Mutation p.D129N 0.69 deleterious(0.03) possibly_damaging(0.737) TCGA-D3-A51T-06 21 45786738 45786738 G A TRPM2 Silent p.G175G 0.79 TCGA-D3-A51T-06 21 46117703 46117703 C T KRTAP10-12 Missense_Mutation p.S196F 0.67 deleterious(0) unknown(0) TCGA-D3-A51T-06 22 17072481 17072481 C T CCT8L2 Nonsense_Mutation p.W320* 0.43 TCGA-D3-A51T-06 22 17280787 17280787 C T XKR3 Missense_Mutation p.D155N 0.33 tolerated(0.27) benign(0.181) TCGA-D3-A51T-06 22 19230350 19230350 G A CLTCL1 Missense_Mutation p.A210V 0.47 tolerated(0.17) benign(0.076) TCGA-D3-A51T-06 22 19319022 19319022 G A HIRA Nonsense_Mutation p.R999* 0.41 TCGA-D3-A51T-06 22 19919990 19919990 G A TXNRD2 Intron 0.33 TCGA-D3-A51T-06 22 20760067 20760067 C T ZNF74 Silent p.F248F 0.50 TCGA-D3-A51T-06 22 21134401 21134401 G A SERPIND1 Missense_Mutation p.M267I 0.45 tolerated(0.18) benign(0) TCGA-D3-A51T-06 22 22931012 22931012 T A IGLV2-33 Silent p.I69I 0.35 TCGA-D3-A51T-06 22 23401670 23401670 G A RTDR1 Silent p.I339I 0.47 TCGA-D3-A51T-06 22 26423383 26423383 C T MYO18B Silent p.N2481N 0.29 TCGA-D3-A51T-06 22 26688779 26688779 G A SEZ6L Missense_Mutation p.G168R 0.43 deleterious_low_confidence(0.01) benign(0.008) TCGA-D3-A51T-06 22 27012113 27012113 C T CRYBB1 Silent p.G57G 0.43 TCGA-D3-A51T-06 22 32480931 32480931 G A SLC5A1 Silent p.V310V 0.38 TCGA-D3-A51T-06 22 32843249 32843249 G C BPIFC Missense_Mutation p.N108K 0.36 tolerated(0.26) benign(0.358) TCGA-D3-A51T-06 22 36897341 36897341 G A FOXRED2 Missense_Mutation p.S388L 0.52 deleterious(0) probably_damaging(0.965) TCGA-D3-A51T-06 22 37695268 37695268 G A CYTH4 Missense_Mutation p.D119N 0.11 tolerated(0.29) possibly_damaging(0.807) TCGA-D3-A51T-06 22 37875454 37875454 C T MFNG Missense_Mutation p.D164N 0.19 deleterious(0.01) benign(0.104) TCGA-D3-A51T-06 22 38119355 38119355 G A TRIOBP Silent p.R264R 0.52 TCGA-D3-A51T-06 22 38823753 38823753 C T KCNJ4 Missense_Mutation p.V129M 0.30 tolerated(0.09) benign(0.326) TCGA-D3-A51T-06 22 39147369 39147369 C T SUN2 Silent p.K44K 0.56 TCGA-D3-A51T-06 22 39218696 39218696 G A NPTXR Missense_Mutation p.P474L 0.13 deleterious(0) possibly_damaging(0.79) TCGA-D3-A51T-06 22 39218804 39218804 G A NPTXR Missense_Mutation p.A438V 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 22 39262795 39262795 G A CBX6 Silent p.L220L 0.16 TCGA-D3-A51T-06 22 39770380 39770380 C T SYNGR1 Silent p.S53S 0.40 TCGA-D3-A51T-06 22 39884006 39884006 C T MGAT3 Silent p.F218F 0.18 TCGA-D3-A51T-06 22 43930616 43930616 C T EFCAB6 Silent p.K1395K 0.39 TCGA-D3-A51T-06 22 43996027 43996027 C T EFCAB6 Missense_Mutation p.G933D 0.14 tolerated(0.05) probably_damaging(1) TCGA-D3-A51T-06 22 46085648 46085648 C T ATXN10 Missense_Mutation p.S58F 0.33 tolerated(0.08) possibly_damaging(0.682) TCGA-D3-A51T-06 22 46930300 46930300 G A CELSR1 Missense_Mutation p.P923L 0.23 tolerated(0.86) benign(0.044) TCGA-D3-A51T-06 22 50649165 50649165 C T SELO Silent p.A392A 0.65 TCGA-D3-A51T-06 22 50649166 50649166 C T SELO Silent p.L393L 0.65 TCGA-D3-A51T-06 22 50925838 50925838 C A MIOX Silent p.R14R 0.14 TCGA-D3-A51T-06 2 100199436 100199436 C T AFF3 Missense_Mutation p.E898K 0.63 tolerated(0.09) benign(0.133) TCGA-D3-A51T-06 2 105912892 105912892 A T TGFBRAP1 Missense_Mutation p.L320H 0.61 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 2 108489291 108489291 G A RGPD4 Missense_Mutation p.E1611K 0.45 tolerated_low_confidence(0.9) benign(0.001) TCGA-D3-A51T-06 2 11798561 11798561 A G NTSR2 3'UTR 0.79 TCGA-D3-A51T-06 2 120776803 120776803 C T EPB41L5 Missense_Mutation p.S48F 0.68 tolerated(0.75) possibly_damaging(0.905) TCGA-D3-A51T-06 2 128522370 128522370 G A WDR33 Intron 0.71 TCGA-D3-A51T-06 2 132236896 132236896 G A TUBA3D Missense_Mutation p.G81E 0.67 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-D3-A51T-06 2 135677382 135677382 C T CCNT2 Missense_Mutation p.S54F 0.68 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 2 135738522 135738522 C T MAP3K19 Silent p.G1263G 0.58 TCGA-D3-A51T-06 2 141110552 141110552 G A LRP1B Nonsense_Mutation p.Q3874* 0.64 TCGA-D3-A51T-06 2 1507821 1507821 G A TPO Missense_Mutation p.E830K 0.59 tolerated(0.61) benign(0.036) TCGA-D3-A51T-06 2 160738735 160738735 C T LY75-CD302 Nonsense_Mutation p.W382* 0.64 TCGA-D3-A51T-06 2 160738736 160738736 C T LY75-CD302 Nonsense_Mutation p.W382* 0.65 TCGA-D3-A51T-06 2 166605284 166605284 G A GALNT3 3'UTR 0.75 TCGA-D3-A51T-06 2 16734245 16734245 C T FAM49A Missense_Mutation p.D311N 0.79 deleterious(0.02) possibly_damaging(0.573) TCGA-D3-A51T-06 2 168105113 168105113 C T XIRP2 Missense_Mutation p.S2404F 0.86 probably_damaging(0.942) TCGA-D3-A51T-06 2 169571592 169571592 G A CERS6 Missense_Mutation p.G231R 0.73 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 2 172700881 172700881 G A SLC25A12 Nonsense_Mutation p.Q155* 0.79 TCGA-D3-A51T-06 2 179569951 179569951 G A TTN Nonsense_Mutation p.Q9852* 0.60 TCGA-D3-A51T-06 2 179577814 179577814 C T TTN Missense_Mutation p.R9016K 0.75 TCGA-D3-A51T-06 2 179579898 179579898 A T TTN Missense_Mutation p.F8672Y 0.66 TCGA-D3-A51T-06 2 179584856 179584856 T A TTN Missense_Mutation p.E7838V 0.83 TCGA-D3-A51T-06 2 179584857 179584857 C T TTN Missense_Mutation p.E7838K 0.83 TCGA-D3-A51T-06 2 179592998 179592998 C T TTN Missense_Mutation p.G6518E 0.71 TCGA-D3-A51T-06 2 179613203 179613203 C T TTN Intron 0.61 TCGA-D3-A51T-06 2 179615216 179615216 G A TTN Intron 0.65 TCGA-D3-A51T-06 2 179616322 179616322 T C TTN Intron 0.83 TCGA-D3-A51T-06 2 179655490 179655490 C T TTN Missense_Mutation p.G582E 0.60 TCGA-D3-A51T-06 2 179732780 179732780 G A CCDC141 Silent p.V849V 0.60 TCGA-D3-A51T-06 2 18113687 18113687 C T KCNS3 Missense_Mutation p.S471L 0.61 tolerated(0.12) benign(0.412) TCGA-D3-A51T-06 2 182363373 182363373 G A ITGA4 Missense_Mutation p.D522N 0.73 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 2 185800849 185800849 G A ZNF804A Silent p.V242V 0.57 TCGA-D3-A51T-06 2 187626905 187626905 C T FAM171B Silent p.S612S 0.79 TCGA-D3-A51T-06 2 187702271 187702271 C T ZSWIM2 Missense_Mutation p.G169S 0.67 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 2 189975025 189975025 G A COL5A2 Missense_Mutation p.A83V 0.07 probably_damaging(0.925) TCGA-D3-A51T-06 2 20647244 20647244 G A RHOB Silent p.K6K 0.71 TCGA-D3-A51T-06 2 21239339 21239339 T A APOB Missense_Mutation p.T1102S 0.60 probably_damaging(0.985) TCGA-D3-A51T-06 2 214794838 214794838 G A SPAG16 Missense_Mutation p.D457N 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 2 219447744 219447744 C T RQCD1 Silent p.H85H 0.66 TCGA-D3-A51T-06 2 219735749 219735749 G A WNT6 Nonsense_Mutation p.W27* 0.68 TCGA-D3-A51T-06 2 219874160 219874160 C T CCDC108 Missense_Mutation p.G1492E 0.74 deleterious(0) probably_damaging(0.985) TCGA-D3-A51T-06 2 220115176 220115176 C G TUBA4A Missense_Mutation p.E415D 0.61 deleterious_low_confidence(0.01) benign(0.202) TCGA-D3-A51T-06 2 222301232 222301232 G A EPHA4 Missense_Mutation p.R745C 0.69 deleterious(0) possibly_damaging(0.762) TCGA-D3-A51T-06 2 228881145 228881145 G A SPHKAP Silent p.A1475A 0.67 TCGA-D3-A51T-06 2 230377581 230377581 C T DNER Silent p.R355R 0.69 TCGA-D3-A51T-06 2 233398649 233398649 G A CHRND Silent p.L352L 0.69 TCGA-D3-A51T-06 2 234750777 234750777 G A HJURP Missense_Mutation p.P217S 0.73 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A51T-06 2 238280866 238280866 C T COL6A3 Missense_Mutation p.G1265D 0.72 probably_damaging(0.992) TCGA-D3-A51T-06 2 238671675 238671675 C T LRRFIP1 Missense_Mutation p.S440L 0.58 deleterious(0.03) benign(0.027) TCGA-D3-A51T-06 2 241535933 241535933 C T CAPN10 Silent p.S492S 0.62 TCGA-D3-A51T-06 2 242079977 242079977 G A PASK Missense_Mutation p.P130S 0.73 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 2 26508288 26508288 C T HADHB Missense_Mutation p.P413L 0.77 deleterious(0.01) possibly_damaging(0.809) TCGA-D3-A51T-06 2 44457863 44457863 C T PPM1B 3'UTR 0.67 TCGA-D3-A51T-06 2 65543951 65543951 G A SPRED2 Missense_Mutation p.P169S 0.78 tolerated(0.2) benign(0.01) TCGA-D3-A51T-06 2 69409720 69409720 C T ANTXR1 Silent p.F427F 0.75 TCGA-D3-A51T-06 2 73446018 73446018 C T SMYD5 Silent p.I42I 0.65 TCGA-D3-A51T-06 2 73491468 73491468 C T FBXO41 Missense_Mutation p.V582M 0.71 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 2 85875082 85875082 C T USP39 Silent p.D531D 0.74 TCGA-D3-A51T-06 2 89513022 89513022 C T IGKV1-27 Silent p.G79G 0.66 TCGA-D3-A51T-06 2 90259782 90259782 G A IGKV1D-8 Missense_Mutation p.M3I 0.64 deleterious(0.02) benign(0.119) TCGA-D3-A51T-06 2 96781235 96781235 G A ADRA2B Silent p.S218S 0.36 TCGA-D3-A51T-06 3 100277365 100277365 C T TMEM45A Missense_Mutation p.R174W 0.42 deleterious(0.01) probably_damaging(0.91) TCGA-D3-A51T-06 3 10081489 10081489 C T FANCD2 Silent p.L219L 0.33 TCGA-D3-A51T-06 3 10101995 10101995 G A FANCD2 Silent p.V558V 0.50 TCGA-D3-A51T-06 3 10443871 10443871 C T ATP2B2 Missense_Mutation p.E187K 0.38 tolerated(0.17) probably_damaging(0.998) TCGA-D3-A51T-06 3 108182076 108182076 G T MYH15 Silent p.I602I 0.11 TCGA-D3-A51T-06 3 108822756 108822756 C T MORC1 Missense_Mutation p.E55K 0.32 deleterious(0.03) possibly_damaging(0.859) TCGA-D3-A51T-06 3 11067950 11067950 C T SLC6A1 Missense_Mutation p.S328L 0.40 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 3 113723520 113723520 G A KIAA1407 Missense_Mutation p.P648S 0.37 tolerated(0.97) benign(0.042) TCGA-D3-A51T-06 3 119177008 119177008 G A TMEM39A Missense_Mutation p.P65S 0.45 deleterious(0.01) possibly_damaging(0.752) TCGA-D3-A51T-06 3 120833873 120833873 G A STXBP5L Missense_Mutation p.G191E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 3 121340811 121340811 G A FBXO40 Missense_Mutation p.G179S 0.44 tolerated(0.79) benign(0.002) TCGA-D3-A51T-06 3 121643802 121643802 C T SLC15A2 Missense_Mutation p.P349L 0.27 deleterious(0) probably_damaging(0.983) TCGA-D3-A51T-06 3 122001019 122001019 G A CASR Silent p.E566E 0.41 TCGA-D3-A51T-06 3 124420920 124420920 G A KALRN Missense_Mutation p.E981K 0.41 tolerated(0.15) benign(0.11) TCGA-D3-A51T-06 3 127439949 127439949 C T MGLL Missense_Mutation p.V153I 0.31 tolerated(0.23) benign(0.01) TCGA-D3-A51T-06 3 128182127 128182127 C T DNAJB8 5'UTR 0.48 TCGA-D3-A51T-06 3 134322946 134322946 C T KY Silent p.E487E 0.29 TCGA-D3-A51T-06 3 136046515 136046515 C T PCCB Missense_Mutation p.L467F 0.49 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-D3-A51T-06 3 13612411 13612411 G A FBLN2 Missense_Mutation p.E186K 0.22 tolerated(0.06) possibly_damaging(0.547) TCGA-D3-A51T-06 3 14724137 14724137 C T C3orf20 5'UTR 0.47 TCGA-D3-A51T-06 3 14803054 14803054 G A C3orf20 Silent p.L809L 0.36 TCGA-D3-A51T-06 3 148459915 148459915 C T AGTR1 3'UTR 0.39 TCGA-D3-A51T-06 3 14861911 14861911 G A FGD5 Missense_Mutation p.G445R 0.58 tolerated(0.07) benign(0.178) TCGA-D3-A51T-06 3 151112519 151112519 G C MED12L Missense_Mutation p.R1860P 0.34 tolerated(0.15) possibly_damaging(0.863) TCGA-D3-A51T-06 3 151164525 151164525 G A IGSF10 Missense_Mutation p.P1082S 0.28 tolerated(0.25) benign(0.055) TCGA-D3-A51T-06 3 155200466 155200466 C T PLCH1 Missense_Mutation p.G1125R 0.47 tolerated_low_confidence(0.15) benign(0.049) TCGA-D3-A51T-06 3 155215137 155215137 G A PLCH1 Silent p.S610S 0.20 TCGA-D3-A51T-06 3 158415517 158415517 C T RARRES1 Missense_Mutation p.G279R 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 3 160099326 160099326 G A IFT80 Missense_Mutation p.T75I 0.49 tolerated(0.09) benign(0.044) TCGA-D3-A51T-06 3 16368346 16368346 T C RFTN1 Missense_Mutation p.N395S 0.52 deleterious(0.03) benign(0.187) TCGA-D3-A51T-06 3 164777775 164777775 C T SI Missense_Mutation p.G354E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 3 167272452 167272452 C T WDR49 Intron 0.43 TCGA-D3-A51T-06 3 17052665 17052665 G A PLCL2 Silent p.V483V 0.39 TCGA-D3-A51T-06 3 172165602 172165602 G A GHSR Missense_Mutation p.T201I 0.22 tolerated(0.1) probably_damaging(0.99) TCGA-D3-A51T-06 3 183907652 183907652 G A ABCF3 Missense_Mutation p.D442N 0.38 deleterious(0.05) probably_damaging(0.914) TCGA-D3-A51T-06 3 183908823 183908823 C T ABCF3 Silent p.V476V 0.23 TCGA-D3-A51T-06 3 184041252 184041252 C T EIF4G1 Silent p.I722I 0.34 TCGA-D3-A51T-06 3 184298273 184298273 G A EPHB3 Missense_Mutation p.M752I 0.39 deleterious(0.01) possibly_damaging(0.45) TCGA-D3-A51T-06 3 186461545 186461545 G A KNG1 3'Flank 0.54 TCGA-D3-A51T-06 3 187444562 187444562 G A BCL6 Silent p.F555F 0.30 TCGA-D3-A51T-06 3 189612233 189612233 A G TP63 Missense_Mutation p.N662S 0.33 tolerated_low_confidence(0.13) benign(0.002) TCGA-D3-A51T-06 3 194079934 194079934 G A LRRC15 3'UTR 0.30 TCGA-D3-A51T-06 3 197346713 197346713 T A AC024560.3 RNA 0.26 TCGA-D3-A51T-06 3 197408089 197408089 G A KIAA0226 Missense_Mutation p.L781F 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 3 21792505 21792505 G A ZNF385D 5'UTR 0.60 TCGA-D3-A51T-06 3 25781175 25781175 C A NGLY1 Missense_Mutation p.R258S 0.36 tolerated(0.16) benign(0.016) TCGA-D3-A51T-06 3 3111974 3111974 C T IL5RA Missense_Mutation p.E400K 0.43 tolerated(0.07) benign(0.139) TCGA-D3-A51T-06 3 32800955 32800955 C T CNOT10 Missense_Mutation p.S594F 0.38 deleterious(0) probably_damaging(0.942) TCGA-D3-A51T-06 3 32927434 32927434 C T TRIM71 Silent p.I343I 0.31 TCGA-D3-A51T-06 3 38941559 38941559 G A SCN11A Silent p.F616F 0.47 TCGA-D3-A51T-06 3 39307312 39307312 A T CX3CR1 Missense_Mutation p.I262N 0.38 deleterious(0) probably_damaging(0.971) TCGA-D3-A51T-06 3 41759338 41759338 G A ULK4 Silent p.I779I 0.36 TCGA-D3-A51T-06 3 43121553 43121553 G A POMGNT2 Silent p.L457L 0.37 TCGA-D3-A51T-06 3 46307396 46307396 C T CCR3 Silent p.F270F 0.46 TCGA-D3-A51T-06 3 48616807 48616807 C T COL7A1 Missense_Mutation p.E1768K 0.44 unknown(0) TCGA-D3-A51T-06 3 48626134 48626134 C T COL7A1 Missense_Mutation p.R843Q 0.36 unknown(0) TCGA-D3-A51T-06 3 48696570 48696570 G A CELSR3 Silent p.S1166S 0.28 TCGA-D3-A51T-06 3 49038932 49038932 G A P4HTM Silent p.K166K 0.43 TCGA-D3-A51T-06 3 49323652 49323652 G A USP4 Silent p.T693T 0.40 TCGA-D3-A51T-06 3 49568863 49568863 C T DAG1 Missense_Mutation p.P307S 0.40 tolerated(0.45) probably_damaging(0.953) TCGA-D3-A51T-06 3 49695236 49695236 C T BSN Silent p.I2749I 0.37 TCGA-D3-A51T-06 3 52256780 52256780 G A TLR9 Silent p.L672L 0.26 TCGA-D3-A51T-06 3 52427426 52427426 C T DNAH1 Silent p.L3517L 0.38 TCGA-D3-A51T-06 3 52562556 52562556 C T NT5DC2 Splice_Site p.X183_splice 0.38 TCGA-D3-A51T-06 3 53834309 53834309 G A CACNA1D Missense_Mutation p.E1673K 0.34 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 3 54676263 54676263 C T CACNA2D3 Nonsense_Mutation p.R388* 0.62 TCGA-D3-A51T-06 3 54872617 54872617 G A CACNA2D3 Missense_Mutation p.G498E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 3 56330219 56330219 C T ERC2 Missense_Mutation p.R301Q 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 3 58520839 58520839 C T ACOX2 5'UTR 0.36 TCGA-D3-A51T-06 3 62543092 62543092 C T CADPS Missense_Mutation p.D581N 0.31 deleterious(0.02) benign(0.395) TCGA-D3-A51T-06 3 63466543 63466543 C T SYNPR Silent p.G40G 0.37 TCGA-D3-A51T-06 3 65350614 65350614 C T MAGI1 Silent p.S1068S 0.39 TCGA-D3-A51T-06 3 68802051 68802051 C T FAM19A4 Silent p.V83V 0.37 TCGA-D3-A51T-06 3 69168543 69168543 G A LMOD3 Silent p.F321F 0.32 TCGA-D3-A51T-06 3 77651399 77651399 G A ROBO2 Missense_Mutation p.A981T 0.31 tolerated(0.16) possibly_damaging(0.483) TCGA-D3-A51T-06 3 77693917 77693917 G A ROBO2 Missense_Mutation p.G1349R 0.34 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-D3-A51T-06 3 87311239 87311239 C T POU1F1 Missense_Mutation p.E222K 0.43 deleterious(0.01) benign(0.173) TCGA-D3-A51T-06 3 89259034 89259034 G A EPHA3 Missense_Mutation p.E60K 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A51T-06 3 9055492 9055492 G A SRGAP3 Silent p.I616I 0.35 TCGA-D3-A51T-06 3 93611825 93611825 G A PROS1 Silent p.S369S 0.25 TCGA-D3-A51T-06 3 97806256 97806256 C T OR5AC2 Silent p.T80T 0.37 TCGA-D3-A51T-06 3 98600485 98600485 A G DCBLD2 Missense_Mutation p.V111A 0.37 deleterious(0) benign(0.142) TCGA-D3-A51T-06 3 9952711 9952711 G A IL17RE Missense_Mutation p.R322Q 0.26 tolerated(0.94) benign(0.001) TCGA-D3-A51T-06 3 99568524 99568524 C T FILIP1L Missense_Mutation p.E666K 0.33 deleterious(0) probably_damaging(0.962) TCGA-D3-A51T-06 4 100062756 100062756 G A ADH4 Silent p.I66I 0.52 TCGA-D3-A51T-06 4 101947217 101947217 A T PPP3CA Silent p.A457A 0.26 TCGA-D3-A51T-06 4 107845337 107845337 C T DKK2 Missense_Mutation p.R185Q 0.48 deleterious(0) probably_damaging(0.968) TCGA-D3-A51T-06 4 108816868 108816868 C T SGMS2 Silent p.T53T 0.32 TCGA-D3-A51T-06 4 109740464 109740464 C T COL25A1 Missense_Mutation p.E623K 0.31 tolerated(0.12) benign(0.105) TCGA-D3-A51T-06 4 110662121 110662121 G A CFI Silent p.T560T 0.43 TCGA-D3-A51T-06 4 110673624 110673624 C G CFI Missense_Mutation p.E314Q 0.49 deleterious(0.04) benign(0.411) TCGA-D3-A51T-06 4 110908998 110908998 G A EGF Missense_Mutation p.D864N 0.31 tolerated(0.18) benign(0.033) TCGA-D3-A51T-06 4 111470984 111470984 G A ENPEP Missense_Mutation p.E815K 0.44 deleterious(0) probably_damaging(0.973) TCGA-D3-A51T-06 4 113303619 113303619 C T ALPK1 Missense_Mutation p.P63S 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 4 113506747 113506747 G A C4orf21 Missense_Mutation p.H1351Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 4 114179475 114179475 C T ANK2 Missense_Mutation p.L432F 0.30 probably_damaging(0.927) TCGA-D3-A51T-06 4 123161431 123161431 C T KIAA1109 Missense_Mutation p.R1532C 0.36 probably_damaging(0.998) TCGA-D3-A51T-06 4 148441110 148441110 C T EDNRA Silent p.L176L 0.36 TCGA-D3-A51T-06 4 15444444 15444444 G A C1QTNF7 3'UTR 0.30 TCGA-D3-A51T-06 4 155507510 155507510 G T FGA Silent p.T357T 0.38 TCGA-D3-A51T-06 4 155749241 155749241 G A RBM46 3'UTR 0.45 TCGA-D3-A51T-06 4 158238851 158238851 C T GRIA2 Silent p.I236I 0.25 TCGA-D3-A51T-06 4 162680617 162680617 C T FSTL5 Missense_Mutation p.D225N 0.33 tolerated(0.1) benign(0.112) TCGA-D3-A51T-06 4 166935656 166935656 G A TLL1 Missense_Mutation p.R329Q 0.25 deleterious(0) probably_damaging(0.984) TCGA-D3-A51T-06 4 167983673 167983673 T G SPOCK3 Missense_Mutation p.T72P 0.35 deleterious(0.04) possibly_damaging(0.623) TCGA-D3-A51T-06 4 175898159 175898159 G A ADAM29 Missense_Mutation p.E495K 0.38 deleterious(0.02) benign(0.206) TCGA-D3-A51T-06 4 177041199 177041199 G A WDR17 Silent p.G187G 0.36 TCGA-D3-A51T-06 4 183651421 183651421 C T TENM3 Missense_Mutation p.S885L 0.27 deleterious(0) possibly_damaging(0.602) TCGA-D3-A51T-06 4 186336952 186336952 C T UFSP2 Missense_Mutation p.E135K 0.45 tolerated(0.56) benign(0.079) TCGA-D3-A51T-06 4 186544065 186544065 C T SORBS2 Intron 0.22 TCGA-D3-A51T-06 4 187004844 187004844 C T TLR3 Silent p.I668I 0.40 TCGA-D3-A51T-06 4 187158078 187158078 C T KLKB1 Missense_Mutation p.H158Y 0.38 tolerated(1) benign(0.002) TCGA-D3-A51T-06 4 189064931 189064931 G A TRIML1 Intron 0.35 TCGA-D3-A51T-06 4 20597357 20597357 G A SLIT2 Missense_Mutation p.D1074N 0.34 tolerated(0.08) benign(0.298) TCGA-D3-A51T-06 4 2515513 2515513 C T RNF4 Silent p.I180I 0.49 TCGA-D3-A51T-06 4 26487354 26487354 G A CCKAR Silent p.P177P 0.40 TCGA-D3-A51T-06 4 3024149 3024149 A G GRK4 Missense_Mutation p.K314R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 4 3425305 3425305 G A RGS12 Silent p.T1057T 0.31 TCGA-D3-A51T-06 4 3425306 3425306 G A RGS12 Missense_Mutation p.E1058K 0.32 deleterious(0) possibly_damaging(0.755) TCGA-D3-A51T-06 4 3430017 3430017 C T RGS12 Intron 0.29 TCGA-D3-A51T-06 4 38828713 38828713 C T TLR6 Silent p.V794V 0.27 TCGA-D3-A51T-06 4 38830454 38830454 T C TLR6 Missense_Mutation p.N214S 0.30 tolerated(0.41) benign(0.001) TCGA-D3-A51T-06 4 38907396 38907396 C T FAM114A1 Nonsense_Mutation p.Q191* 0.35 TCGA-D3-A51T-06 4 41684366 41684366 G A LIMCH1 Missense_Mutation p.G861E 0.15 tolerated(1) benign(0) TCGA-D3-A51T-06 4 42145871 42145871 C T BEND4 Missense_Mutation p.E210K 0.35 tolerated_low_confidence(0.11) possibly_damaging(0.905) TCGA-D3-A51T-06 4 47644047 47644047 C T CORIN Silent p.V696V 0.47 TCGA-D3-A51T-06 4 4864788 4864788 C T MSX1 Missense_Mutation p.P277L 0.33 deleterious(0) possibly_damaging(0.614) TCGA-D3-A51T-06 4 54968052 54968052 C T GSX2 Missense_Mutation p.A293V 0.25 tolerated(0.09) benign(0.004) TCGA-D3-A51T-06 4 54968053 54968053 C T GSX2 Silent p.A293A 0.25 TCGA-D3-A51T-06 4 5853183 5853183 G A CRMP1 Silent p.F278F 0.35 TCGA-D3-A51T-06 4 59341 59341 G A ZNF595 Missense_Mutation p.D8N 0.10 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-D3-A51T-06 4 6304174 6304174 C T WFS1 Silent p.F884F 0.34 TCGA-D3-A51T-06 4 6599013 6599013 C T MAN2B2 Missense_Mutation p.R411C 0.46 tolerated(0.06) possibly_damaging(0.855) TCGA-D3-A51T-06 4 68777091 68777091 C T TMPRSS11A Missense_Mutation p.R412Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 4 69817407 69817407 C T UGT2A3 Silent p.G24G 0.35 TCGA-D3-A51T-06 4 70156454 70156454 C T UGT2B28 Missense_Mutation p.A412V 0.67 deleterious(0) probably_damaging(0.983) TCGA-D3-A51T-06 4 70822041 70822041 G A CSN2 3'UTR 0.27 TCGA-D3-A51T-06 4 71232663 71232663 C T SMR3A Silent p.F119F 0.42 TCGA-D3-A51T-06 4 71508130 71508130 T G ENAM Silent p.P329P 0.46 TCGA-D3-A51T-06 4 74270882 74270882 C T ALB Silent p.F43F 0.45 TCGA-D3-A51T-06 4 74453571 74453571 C T RASSF6 Missense_Mutation p.R155K 0.37 tolerated(0.98) benign(0.001) TCGA-D3-A51T-06 4 74702957 74702957 C T CXCL6 Missense_Mutation p.P94S 0.27 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 4 75167500 75167500 C T MTHFD2L Silent p.L340L 0.53 TCGA-D3-A51T-06 4 77817214 77817214 C T SOWAHB Missense_Mutation p.E597K 0.47 deleterious(0) benign(0.292) TCGA-D3-A51T-06 4 79786768 79786768 G A BMP2K Silent p.K375K 0.46 TCGA-D3-A51T-06 4 81207518 81207518 C T FGF5 Nonsense_Mutation p.Q167* 0.38 TCGA-D3-A51T-06 4 83793119 83793119 G A SEC31A Missense_Mutation p.R254C 0.21 deleterious(0) possibly_damaging(0.766) TCGA-D3-A51T-06 4 85701308 85701308 T A WDFY3 Missense_Mutation p.S1440C 0.35 deleterious(0.04) benign(0.178) TCGA-D3-A51T-06 4 88766616 88766616 G A MEPE Missense_Mutation p.R199K 0.37 tolerated(0.14) benign(0.107) TCGA-D3-A51T-06 4 88904052 88904052 G A SPP1 3'UTR 0.47 TCGA-D3-A51T-06 4 89588562 89588562 C T HERC3 Missense_Mutation p.P456S 0.39 tolerated(1) probably_damaging(0.998) TCGA-D3-A51T-06 4 94750453 94750453 G A ATOH1 Missense_Mutation p.E126K 0.42 deleterious(0.01) benign(0.264) TCGA-D3-A51T-06 5 102326039 102326039 G A PAM Missense_Mutation p.G516E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 10442153 10442153 G A ROPN1L Intron 0.38 TCGA-D3-A51T-06 5 107216802 107216802 C T FBXL17 Missense_Mutation p.G634E 0.45 deleterious(0) probably_damaging(0.976) TCGA-D3-A51T-06 5 107216803 107216803 C T FBXL17 Missense_Mutation p.G634R 0.45 deleterious(0) probably_damaging(0.982) TCGA-D3-A51T-06 5 108672990 108672990 G A PJA2 Missense_Mutation p.S690F 0.17 deleterious(0.02) unknown(0) TCGA-D3-A51T-06 5 112337084 112337084 C T DCP2 Missense_Mutation p.P206S 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 115151998 115151998 C T CDO1 Missense_Mutation p.V33M 0.47 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A51T-06 5 115151999 115151999 C T CDO1 Silent p.E32E 0.48 TCGA-D3-A51T-06 5 121787235 121787235 G A SNCAIP Missense_Mutation p.G898E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 122359606 122359606 C T PPIC Silent p.V201V 0.38 TCGA-D3-A51T-06 5 126792921 126792921 G A MEGF10 Missense_Mutation p.D1112N 0.45 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 5 128321020 128321020 G A SLC27A6 Missense_Mutation p.G226R 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 128864240 128864240 G A ADAMTS19 Missense_Mutation p.E394K 0.33 deleterious(0.01) possibly_damaging(0.755) TCGA-D3-A51T-06 5 129070779 129070779 A T ADAMTS19 Missense_Mutation p.N1150I 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 5 131607493 131607493 C T PDLIM4 Missense_Mutation p.P227L 0.42 tolerated(0.11) benign(0.002) TCGA-D3-A51T-06 5 132056301 132056301 G A KIF3A Missense_Mutation p.R206C 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 132425303 132425303 C T HSPA4 Missense_Mutation p.L432F 0.28 deleterious(0) probably_damaging(0.997) TCGA-D3-A51T-06 5 133643868 133643868 G A CDKL3 Missense_Mutation p.A442V 0.38 deleterious(0.04) benign(0.052) TCGA-D3-A51T-06 5 133909384 133909384 C T JADE2 Missense_Mutation p.A495V 0.44 deleterious(0) benign(0.031) TCGA-D3-A51T-06 5 137727454 137727454 C T KDM3B Silent p.T711T 0.23 TCGA-D3-A51T-06 5 137734050 137734050 G A KDM3B Silent p.E1005E 0.37 TCGA-D3-A51T-06 5 13776692 13776692 G A DNAH5 Missense_Mutation p.R3077W 0.33 possibly_damaging(0.898) TCGA-D3-A51T-06 5 140222038 140222038 G A PCDHA8 Missense_Mutation p.D378N 0.38 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-D3-A51T-06 5 140222414 140222414 C T PCDHA8 Missense_Mutation p.S503L 0.43 tolerated_low_confidence(0.21) benign(0.003) TCGA-D3-A51T-06 5 140229265 140229265 C T PCDHA9 Silent p.F395F 0.33 TCGA-D3-A51T-06 5 140236456 140236456 G A PCDHA10 Missense_Mutation p.E275K 0.28 tolerated_low_confidence(0.08) benign(0.236) TCGA-D3-A51T-06 5 140248703 140248703 G A PCDHA11 Silent p.Q5Q 0.30 TCGA-D3-A51T-06 5 140262979 140262979 G A PCDHA13 Missense_Mutation p.D376N 0.47 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D3-A51T-06 5 140262982 140262982 C T PCDHA13 Missense_Mutation p.R377C 0.36 tolerated_low_confidence(0.05) possibly_damaging(0.489) TCGA-D3-A51T-06 5 140307998 140307998 C T PCDHAC1 Silent p.I507I 0.44 TCGA-D3-A51T-06 5 140481345 140481345 C T PCDHB3 Missense_Mutation p.S371F 0.22 tolerated_low_confidence(0.17) benign(0.012) TCGA-D3-A51T-06 5 140502563 140502563 G A PCDHB4 Missense_Mutation p.G328E 0.37 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-D3-A51T-06 5 140554308 140554308 G A PCDHB7 Missense_Mutation p.S631N 0.17 deleterious_low_confidence(0.02) benign(0.135) TCGA-D3-A51T-06 5 140559772 140559772 G A PCDHB8 Silent p.R719R 0.40 TCGA-D3-A51T-06 5 140559773 140559773 G A PCDHB8 Missense_Mutation p.A720T 0.40 tolerated_low_confidence(0.06) benign(0.142) TCGA-D3-A51T-06 5 140589270 140589270 T G PCDHB12 Missense_Mutation p.V264G 0.47 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-D3-A51T-06 5 140590145 140590145 G A PCDHB12 Missense_Mutation p.D556N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-D3-A51T-06 5 140712649 140712649 G A PCDHGA1 Missense_Mutation p.D800N 0.46 tolerated_low_confidence(0.24) benign(0.003) TCGA-D3-A51T-06 5 140719003 140719003 G A PCDHGA2 Silent p.K155K 0.43 TCGA-D3-A51T-06 5 140725539 140725539 C T PCDHGA3 Nonsense_Mutation p.Q647* 0.37 TCGA-D3-A51T-06 5 140725813 140725813 C T PCDHGA3 Missense_Mutation p.S738L 0.46 deleterious_low_confidence(0) benign(0.305) TCGA-D3-A51T-06 5 140734830 140734830 G A PCDHGA4 Silent p.G21G 0.39 TCGA-D3-A51T-06 5 140736453 140736453 C T PCDHGA4 Silent p.I562I 0.38 TCGA-D3-A51T-06 5 140744147 140744147 T G PCDHGA5 Missense_Mutation p.L84V 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A51T-06 5 140763701 140763701 G A PCDHGA7 Missense_Mutation p.R412Q 0.53 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-D3-A51T-06 5 140955826 140955826 C T DIAPH1 Missense_Mutation p.E478K 0.32 unknown(0) TCGA-D3-A51T-06 5 143586424 143586424 C T KCTD16 Silent p.S49S 0.38 TCGA-D3-A51T-06 5 147594500 147594500 C T SPINK6 Missense_Mutation p.P77L 0.35 tolerated(0.72) benign(0.001) TCGA-D3-A51T-06 5 148754101 148754101 C T IL17B Missense_Mutation p.G125D 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 150914097 150914097 G A FAT2 Silent p.T3100T 0.42 TCGA-D3-A51T-06 5 150945466 150945466 G A FAT2 Silent p.A1009A 0.46 TCGA-D3-A51T-06 5 156589659 156589659 C T FAM71B Silent p.R539R 0.47 TCGA-D3-A51T-06 5 156593013 156593013 T C FAM71B Missense_Mutation p.K56R 0.33 tolerated(0.1) possibly_damaging(0.748) TCGA-D3-A51T-06 5 156786131 156786131 A T CYFIP2 Missense_Mutation p.E905V 0.40 deleterious(0) probably_damaging(0.926) TCGA-D3-A51T-06 5 160061597 160061597 G A ATP10B Missense_Mutation p.S382F 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 160758022 160758022 G A GABRB2 Silent p.F315F 0.40 TCGA-D3-A51T-06 5 167653129 167653129 C T TENM2 Silent p.R1715R 0.38 TCGA-D3-A51T-06 5 167653130 167653130 C T TENM2 Missense_Mutation p.P1716S 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A51T-06 5 168212946 168212946 C T SLIT3 Missense_Mutation p.G373R 0.29 deleterious(0.02) possibly_damaging(0.879) TCGA-D3-A51T-06 5 172550206 172550206 G A CREBRF Splice_Site p.X602_splice 0.26 TCGA-D3-A51T-06 5 175772343 175772343 C T SIMC1 Silent p.V423V 0.33 TCGA-D3-A51T-06 5 176002137 176002137 G T CDHR2 Missense_Mutation p.G183V 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 5 176024766 176024766 G A GPRIN1 Silent p.S690S 0.45 TCGA-D3-A51T-06 5 177474184 177474184 C A FAM153C Intron 0.40 TCGA-D3-A51T-06 5 178359140 178359140 G A ZFP2 Missense_Mutation p.G276R 0.25 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 5 179757755 179757755 C T GFPT2 Missense_Mutation p.R160K 0.30 tolerated(0.85) benign(0.003) TCGA-D3-A51T-06 5 23521231 23521231 C T PRDM9 Missense_Mutation p.P151S 0.52 deleterious_low_confidence(0.03) benign(0.013) TCGA-D3-A51T-06 5 26881369 26881369 G A CDH9 Missense_Mutation p.S749L 0.38 deleterious(0.01) possibly_damaging(0.504) TCGA-D3-A51T-06 5 26906065 26906065 T C CDH9 Intron 0.37 TCGA-D3-A51T-06 5 271916 271916 C T PDCD6 Silent p.F27F 0.24 TCGA-D3-A51T-06 5 32415079 32415079 T C ZFR Missense_Mutation p.Y260C 0.48 deleterious(0.03) unknown(0) TCGA-D3-A51T-06 5 3600290 3600290 C T IRX1 Missense_Mutation p.P410S 0.33 tolerated(0.64) benign(0.245) TCGA-D3-A51T-06 5 38881697 38881697 G A OSMR Silent p.G83G 0.33 TCGA-D3-A51T-06 5 38881818 38881818 C T OSMR Missense_Mutation p.P124S 0.33 tolerated(0.18) possibly_damaging(0.46) TCGA-D3-A51T-06 5 38924655 38924655 G A OSMR Missense_Mutation p.A668T 0.36 tolerated(0.53) benign(0.017) TCGA-D3-A51T-06 5 41004506 41004506 C T MROH2B Missense_Mutation p.R1379Q 0.46 tolerated(0.08) benign(0.109) TCGA-D3-A51T-06 5 41038976 41038976 C T MROH2B Silent p.G692G 0.30 TCGA-D3-A51T-06 5 42718182 42718182 C T GHR Missense_Mutation p.P302S 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 5 43446390 43446390 G C C5orf28 Missense_Mutation p.F194L 0.58 tolerated(0.16) benign(0.005) TCGA-D3-A51T-06 5 44388621 44388621 G A FGF10 Missense_Mutation p.S55F 0.35 tolerated(0.12) benign(0.154) TCGA-D3-A51T-06 5 45303877 45303877 G A HCN1 Missense_Mutation p.P481L 0.37 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 5 52096927 52096927 C T PELO Silent p.L233L 0.29 TCGA-D3-A51T-06 5 52386467 52386467 C T ITGA2 3'UTR 0.35 TCGA-D3-A51T-06 5 54329613 54329613 G A GZMK Silent p.L218L 0.24 TCGA-D3-A51T-06 5 61811238 61811238 G A IPO11 Silent p.L642L 0.33 TCGA-D3-A51T-06 5 61811239 61811239 G A IPO11 Missense_Mutation p.V643I 0.34 tolerated(0.31) benign(0.011) TCGA-D3-A51T-06 5 63890536 63890536 G A RGS7BP Splice_Site p.X155_splice 0.40 TCGA-D3-A51T-06 5 63890537 63890537 G A RGS7BP Missense_Mutation p.G155E 0.84 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A51T-06 5 64595920 64595920 C T ADAMTS6 Missense_Mutation p.G421E 0.29 tolerated(0.32) probably_damaging(1) TCGA-D3-A51T-06 5 64976485 64976485 G A SGTB Missense_Mutation p.P206S 0.30 tolerated(0.09) benign(0.05) TCGA-D3-A51T-06 5 6611115 6611115 G A NSUN2 Silent p.F393F 0.33 TCGA-D3-A51T-06 5 68504126 68504126 C T CENPH Silent p.I197I 0.35 TCGA-D3-A51T-06 5 68572406 68572406 C T CDK7 Missense_Mutation p.P301S 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A51T-06 5 71491772 71491772 G A MAP1B Missense_Mutation p.E864K 0.45 benign(0.41) TCGA-D3-A51T-06 5 75896636 75896636 G A IQGAP2 Splice_Site p.X358_splice 0.44 TCGA-D3-A51T-06 5 80369246 80369246 G A RASGRF2 Missense_Mutation p.D288N 0.33 deleterious(0) possibly_damaging(0.798) TCGA-D3-A51T-06 5 80388641 80388641 C T RASGRF2 Missense_Mutation p.S471F 0.34 tolerated(0.09) possibly_damaging(0.896) TCGA-D3-A51T-06 5 80408655 80408655 C T RASGRF2 Missense_Mutation p.P689S 0.60 deleterious(0.02) possibly_damaging(0.895) TCGA-D3-A51T-06 5 80628317 80628317 C T ACOT12 Missense_Mutation p.R457Q 0.40 tolerated(0.19) benign(0.071) TCGA-D3-A51T-06 5 82817840 82817840 G A VCAN Missense_Mutation p.E1239K 0.52 deleterious(0) possibly_damaging(0.776) TCGA-D3-A51T-06 6 111711374 111711374 T C REV3L Missense_Mutation p.I224M 0.70 tolerated(0.22) benign(0.007) TCGA-D3-A51T-06 6 117127687 117127687 C T GPRC6A Missense_Mutation p.R394K 0.90 tolerated(0.91) benign(0.002) TCGA-D3-A51T-06 6 117216371 117216371 G A RFX6 Splice_Site p.X224_splice 0.76 TCGA-D3-A51T-06 6 117609807 117609807 C T ROS1 Missense_Mutation p.E2298K 0.64 tolerated_low_confidence(0.16) benign(0.007) TCGA-D3-A51T-06 6 12122042 12122042 G A HIVEP1 Missense_Mutation p.D672N 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 6 12294322 12294322 G A EDN1 Missense_Mutation p.E128K 0.22 tolerated(0.12) benign(0.035) TCGA-D3-A51T-06 6 12749949 12749949 C T PHACTR1 Silent p.P59P 0.30 TCGA-D3-A51T-06 6 128540237 128540237 C T PTPRK Missense_Mutation p.R233Q 0.74 tolerated(0.44) possibly_damaging(0.552) TCGA-D3-A51T-06 6 136597363 136597363 C T BCLAF1 Missense_Mutation p.E434K 0.30 tolerated(0.07) possibly_damaging(0.486) TCGA-D3-A51T-06 6 139222235 139222235 A T ECT2L Silent p.I855I 0.48 TCGA-D3-A51T-06 6 143094251 143094251 C T HIVEP2 Missense_Mutation p.R542K 0.67 deleterious(0) probably_damaging(0.989) TCGA-D3-A51T-06 6 152779954 152779954 C T SYNE1 Missense_Mutation p.E836K 0.59 possibly_damaging(0.733) TCGA-D3-A51T-06 6 160663398 160663398 C T SLC22A2 Missense_Mutation p.G439E 0.63 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 6 160906968 160906968 G A LPAL2 RNA 0.64 TCGA-D3-A51T-06 6 25769286 25769286 G A SLC17A4 Missense_Mutation p.M55I 0.88 tolerated(0.24) benign(0.093) TCGA-D3-A51T-06 6 27369096 27369096 G A ZNF391 Missense_Mutation p.R316Q 0.27 tolerated(1) possibly_damaging(0.847) TCGA-D3-A51T-06 6 27925746 27925746 C T OR2B6 Missense_Mutation p.S243F 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 6 28962815 28962815 G A ZNF311 Missense_Mutation p.S655F 0.47 deleterious_low_confidence(0.01) benign(0.002) TCGA-D3-A51T-06 6 29012249 29012249 C T OR2W1 Missense_Mutation p.R235Q 0.28 tolerated(0.34) benign(0.011) TCGA-D3-A51T-06 6 29394885 29394885 A G OR11A1 Silent p.F178F 0.22 TCGA-D3-A51T-06 6 29408375 29408375 G A OR10C1 Missense_Mutation p.E195K 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A51T-06 6 29796368 29796368 G A HLA-G Missense_Mutation p.G131E 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A51T-06 6 30078327 30078327 C T TRIM31 Silent p.G214G 0.26 TCGA-D3-A51T-06 6 30227467 30227467 C T HCG17 Intron 0.24 TCGA-D3-A51T-06 6 30309545 30309545 C T TRIM39 Missense_Mutation p.R356C 0.47 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A51T-06 6 30954320 30954320 C T MUC21 Missense_Mutation p.S123F 0.30 deleterious(0) unknown(0) TCGA-D3-A51T-06 6 31083807 31083807 G A CDSN Missense_Mutation p.P529S 0.22 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D3-A51T-06 6 31919889 31919889 G A NELFE 3'UTR 0.24 TCGA-D3-A51T-06 6 32185834 32185834 G A NOTCH4 Missense_Mutation p.P521L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 6 32260967 32260967 C T C6orf10 Missense_Mutation p.D495N 0.28 tolerated(0.22) probably_damaging(0.99) TCGA-D3-A51T-06 6 32334079 32334079 C T C6orf10 Missense_Mutation p.G56E 0.29 deleterious(0) benign(0.42) TCGA-D3-A51T-06 6 32917532 32917532 C T HLA-DMA Missense_Mutation p.G170R 0.28 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 6 32918392 32918392 C T HLA-DMA Missense_Mutation p.G93R 0.26 tolerated(0.36) benign(0.004) TCGA-D3-A51T-06 6 33284727 33284727 G A ZBTB22 5'UTR 0.44 TCGA-D3-A51T-06 6 33284728 33284728 G A ZBTB22 5'UTR 0.44 TCGA-D3-A51T-06 6 33647708 33647708 C T ITPR3 Missense_Mutation p.S1341L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A51T-06 6 34101229 34101229 G A GRM4 Silent p.P15P 0.15 TCGA-D3-A51T-06 6 35056460 35056460 C T ANKS1A 3'UTR 0.87 TCGA-D3-A51T-06 6 35261549 35261549 C T ZNF76 Silent p.L451L 0.34 TCGA-D3-A51T-06 6 37247200 37247200 G A TBC1D22B Silent p.E78E 0.32 TCGA-D3-A51T-06 6 37281614 37281614 C T TBC1D22B Missense_Mutation p.P371L 0.20 tolerated(0.64) possibly_damaging(0.717) TCGA-D3-A51T-06 6 37446927 37446927 C T CMTR1 Silent p.P757P 0.23 TCGA-D3-A51T-06 6 37618054 37618054 C T MDGA1 Silent p.K480K 0.41 TCGA-D3-A51T-06 6 38704973 38704973 G A DNAH8 Missense_Mutation p.G81E 0.41 benign(0.004) TCGA-D3-A51T-06 6 38723782 38723782 A T DNAH8 Missense_Mutation p.N264I 0.36 probably_damaging(0.934) TCGA-D3-A51T-06 6 38820470 38820470 C T DNAH8 Missense_Mutation p.P1606S 0.29 benign(0.007) TCGA-D3-A51T-06 6 40399671 40399671 G A LRFN2 Silent p.S394S 0.23 TCGA-D3-A51T-06 6 41303909 41303909 G A NCR2 Missense_Mutation p.G46D 0.37 tolerated(0.37) benign(0.012) TCGA-D3-A51T-06 6 41617376 41617376 C T MDFI Silent p.P93P 0.22 TCGA-D3-A51T-06 6 43025923 43025923 G A MRPL2 Missense_Mutation p.P49S 0.29 tolerated_low_confidence(0.34) benign(0.004) TCGA-D3-A51T-06 6 43395600 43395600 C T ABCC10 Intron 0.18 TCGA-D3-A51T-06 6 43400391 43400391 T A ABCC10 Missense_Mutation p.S225T 0.29 deleterious(0.03) possibly_damaging(0.676) TCGA-D3-A51T-06 6 44364086 44364086 G A CDC5L Missense_Mutation p.E150K 0.29 deleterious(0) probably_damaging(0.991) TCGA-D3-A51T-06 6 46806849 46806849 C T MEP1A Silent p.I739I 0.38 TCGA-D3-A51T-06 6 47846142 47846142 G A PTCHD4 Missense_Mutation p.S813F 0.24 deleterious(0) probably_damaging(0.974) TCGA-D3-A51T-06 6 49604462 49604462 A T RHAG Missense_Mutation p.L22I 0.35 tolerated(0.46) benign(0.052) TCGA-D3-A51T-06 6 50016276 50016276 C T DEFB112 Missense_Mutation p.R30Q 0.32 tolerated(1) benign(0) TCGA-D3-A51T-06 6 50681780 50681780 C T TFAP2D Silent p.T4T 0.18 TCGA-D3-A51T-06 6 51947229 51947229 G A PKHD1 Missense_Mutation p.P81L 0.33 deleterious(0) probably_damaging(0.985) TCGA-D3-A51T-06 6 70981405 70981405 G A COL9A1 Missense_Mutation p.P366S 0.50 possibly_damaging(0.843) TCGA-D3-A51T-06 6 73904739 73904739 G A KCNQ5 Missense_Mutation p.D820N 0.54 deleterious_low_confidence(0.01) benign(0.342) TCGA-D3-A51T-06 6 7580988 7580988 C G DSP Missense_Mutation p.T1522R 0.24 benign(0.171) TCGA-D3-A51T-06 6 76734939 76734939 C T IMPG1 Silent p.E178E 0.31 TCGA-D3-A51T-06 7 100002657 100002657 C T ZCWPW1 Silent p.E410E 0.41 TCGA-D3-A51T-06 7 100029116 100029116 C T MEPCE Missense_Mutation p.S492F 0.42 deleterious(0) probably_damaging(0.991) TCGA-D3-A51T-06 7 100238392 100238392 G A TFR2 Silent p.F130F 0.41 TCGA-D3-A51T-06 7 100490067 100490067 C T ACHE Missense_Mutation p.E481K 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 7 101200855 101200855 C T COL26A1 3'UTR 0.22 TCGA-D3-A51T-06 7 101840442 101840442 G A CUX1 Missense_Mutation p.G595E 0.44 deleterious(0) unknown(0) TCGA-D3-A51T-06 7 103123406 103123406 C T RELN Missense_Mutation p.M3398I 0.30 tolerated(0.18) benign(0.168) TCGA-D3-A51T-06 7 103194136 103194136 A T RELN Silent p.L1980L 0.25 TCGA-D3-A51T-06 7 107315415 107315415 G A SLC26A4 Missense_Mutation p.G209E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 7 107698335 107698335 C T LAMB4 Silent p.G1107G 0.47 TCGA-D3-A51T-06 7 117432652 117432652 C T CTTNBP2 Missense_Mutation p.E200K 0.33 deleterious(0.02) benign(0.22) TCGA-D3-A51T-06 7 123593820 123593820 G A SPAM1 Missense_Mutation p.E66K 0.38 tolerated(0.57) benign(0.035) TCGA-D3-A51T-06 7 134216714 134216714 C T AKR1B10 Missense_Mutation p.L97F 0.41 deleterious(0.02) probably_damaging(0.923) TCGA-D3-A51T-06 7 137271862 137271862 C T DGKI Missense_Mutation p.R469Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 7 140481403 140481403 C T BRAF Missense_Mutation p.G469R 0.36 deleterious(0.01) probably_damaging(0.918) TCGA-D3-A51T-06 7 141618830 141618830 A T OR9A4 Missense_Mutation p.K52I 0.40 tolerated(0.3) possibly_damaging(0.655) TCGA-D3-A51T-06 7 141619575 141619575 C T OR9A4 Silent p.A300A 0.30 TCGA-D3-A51T-06 7 141722076 141722076 C T MGAM Missense_Mutation p.S240L 0.49 deleterious(0) probably_damaging(0.938) TCGA-D3-A51T-06 7 141740594 141740594 C T MGAM Nonsense_Mutation p.R816* 0.35 TCGA-D3-A51T-06 7 141740641 141740641 G A MGAM Silent p.L831L 0.36 TCGA-D3-A51T-06 7 141797438 141797438 G A MGAM Missense_Mutation p.D1684N 0.27 tolerated(0.09) benign(0.155) TCGA-D3-A51T-06 7 142111678 142111678 C T TRBV5-7 Missense_Mutation p.D20N 0.25 tolerated(0.08) benign(0.023) TCGA-D3-A51T-06 7 142180696 142180696 G A TRBV6-5 Nonsense_Mutation p.R55* 0.10 TCGA-D3-A51T-06 7 142231586 142231586 C T TRBV10-1 Missense_Mutation p.A111T 0.40 deleterious(0.04) possibly_damaging(0.838) TCGA-D3-A51T-06 7 142247204 142247204 G A TRBV7-3 Silent p.F84F 0.25 TCGA-D3-A51T-06 7 142423623 142423623 C T TRBV27 Silent p.F93F 0.43 TCGA-D3-A51T-06 7 142459658 142459658 C T PRSS1 Silent p.I78I 0.27 TCGA-D3-A51T-06 7 142563350 142563350 G A EPHB6 Missense_Mutation p.R356Q 0.48 deleterious(0) possibly_damaging(0.667) TCGA-D3-A51T-06 7 142625877 142625877 C T TRPV5 Missense_Mutation p.G224E 0.37 tolerated(0.46) benign(0.005) TCGA-D3-A51T-06 7 143771320 143771320 G A OR2A25 Missense_Mutation p.G3E 0.42 tolerated(0.53) benign(0.002) TCGA-D3-A51T-06 7 143792622 143792622 C T OR2A12 Missense_Mutation p.T141I 0.26 tolerated(0.79) benign(0.005) TCGA-D3-A51T-06 7 143827039 143827039 C T OR2A14 Silent p.S278S 0.36 TCGA-D3-A51T-06 7 144077024 144077024 G A ARHGEF5 Missense_Mutation p.E1557K 0.42 deleterious(0) probably_damaging(0.996) TCGA-D3-A51T-06 7 146471397 146471397 C T CNTNAP2 Silent p.P44P 0.20 TCGA-D3-A51T-06 7 148769369 148769369 G A ZNF786 Silent p.I165I 0.21 TCGA-D3-A51T-06 7 149489531 149489531 G A SSPO RNA 0.48 TCGA-D3-A51T-06 7 150174385 150174385 G A GIMAP8 Silent p.K505K 0.43 TCGA-D3-A51T-06 7 150327158 150327158 C T GIMAP6 Missense_Mutation p.E25K 0.33 tolerated(0.14) benign(0.084) TCGA-D3-A51T-06 7 157361591 157361591 C T PTPRN2 Intron 0.29 TCGA-D3-A51T-06 7 157959910 157959910 G A PTPRN2 Missense_Mutation p.S208F 0.43 deleterious(0.01) benign(0.115) TCGA-D3-A51T-06 7 20795139 20795139 G A ABCB5 Silent p.L1222L 0.39 TCGA-D3-A51T-06 7 21611424 21611424 G A DNAH11 Missense_Mutation p.D476N 0.23 benign(0.101) TCGA-D3-A51T-06 7 21695476 21695476 C T DNAH11 Silent p.F1662F 0.26 TCGA-D3-A51T-06 7 23729011 23729011 C T FAM221A Silent p.P121P 0.24 TCGA-D3-A51T-06 7 23775180 23775180 G A STK31 Silent p.L169L 0.44 TCGA-D3-A51T-06 7 24703293 24703293 G T MPP6 Nonsense_Mutation p.G246* 0.34 TCGA-D3-A51T-06 7 24756935 24756935 G A DFNA5 Missense_Mutation p.P212L 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A51T-06 7 2951926 2951926 G A CARD11 Silent p.I1008I 0.42 TCGA-D3-A51T-06 7 31682348 31682348 C A CCDC129 Missense_Mutation p.P481Q 0.31 deleterious(0.02) probably_damaging(0.979) TCGA-D3-A51T-06 7 34698086 34698086 C T NPSR1 Missense_Mutation p.S21F 0.37 tolerated(0.74) benign(0.002) TCGA-D3-A51T-06 7 44042238 44042238 G A SPDYE1 Silent p.R103R 0.28 TCGA-D3-A51T-06 7 44259765 44259765 G A CAMK2B Missense_Mutation p.R633C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-D3-A51T-06 7 44530080 44530080 G A NUDCD3 Silent p.F40F 0.38 TCGA-D3-A51T-06 7 53103987 53103987 G A POM121L12 Missense_Mutation p.R208Q 0.42 tolerated(0.43) benign(0.022) TCGA-D3-A51T-06 7 5327602 5327602 C T SLC29A4 Missense_Mutation p.A52V 0.39 tolerated(0.31) benign(0.001) TCGA-D3-A51T-06 7 54612452 54612452 G A VSTM2A Missense_Mutation p.D73N 0.32 tolerated(0.23) benign(0.049) TCGA-D3-A51T-06 7 57528531 57528531 G A ZNF716 Missense_Mutation p.D122N 0.34 tolerated(1) benign(0) TCGA-D3-A51T-06 7 6476165 6476165 C T DAGLB Splice_Site p.X83_splice 0.50 TCGA-D3-A51T-06 7 72743439 72743439 G A FKBP6 Missense_Mutation p.M84I 0.39 tolerated(0.07) benign(0.406) TCGA-D3-A51T-06 7 73010776 73010776 G A MLXIPL Missense_Mutation p.S619F 0.28 deleterious(0.03) benign(0.418) TCGA-D3-A51T-06 7 73483000 73483000 G T ELN Silent p.L715L 0.37 TCGA-D3-A51T-06 7 73604023 73604023 G A EIF4H Missense_Mutation p.D90N 0.41 deleterious(0.02) benign(0.07) TCGA-D3-A51T-06 7 7412718 7412718 G A COL28A1 Missense_Mutation p.P940L 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A51T-06 7 74237300 74237300 G A GTF2IRD2 Missense_Mutation p.P132S 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A51T-06 7 75051376 75051376 G C POM121C Missense_Mutation p.P720R 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 7 81381566 81381566 C T HGF Silent p.S165S 0.45 TCGA-D3-A51T-06 7 89861917 89861917 G A STEAP2 Silent p.P484P 0.29 TCGA-D3-A51T-06 7 91699371 91699371 G A AKAP9 Missense_Mutation p.E2120K 0.36 probably_damaging(0.999) TCGA-D3-A51T-06 7 92765048 92765048 G A SAMD9L Silent p.S79S 0.36 TCGA-D3-A51T-06 7 98608864 98608864 T C TRRAP Silent p.L3696L 0.34 TCGA-D3-A51T-06 7 99264384 99264384 C T CYP3A5 Intron 0.27 TCGA-D3-A51T-06 7 99696780 99696780 G A MCM7 Missense_Mutation p.R150W 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 7 99917629 99917629 G A SPDYE3 3'UTR 0.36 TCGA-D3-A51T-06 8 101609019 101609019 G A SNX31 Missense_Mutation p.P276S 0.32 tolerated(0.13) benign(0.078) TCGA-D3-A51T-06 8 110567014 110567014 C T EBAG9 Silent p.I73I 0.46 TCGA-D3-A51T-06 8 113236901 113236901 G A CSMD3 3'UTR 0.39 TCGA-D3-A51T-06 8 113403005 113403005 C T CSMD3 Missense_Mutation p.G1941E 0.42 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 8 113529312 113529312 A C CSMD3 Missense_Mutation p.I1569M 0.36 tolerated(0.1) probably_damaging(0.992) TCGA-D3-A51T-06 8 113649118 113649118 C T CSMD3 Missense_Mutation p.E1215K 0.41 deleterious(0.04) possibly_damaging(0.877) TCGA-D3-A51T-06 8 114111074 114111074 C T CSMD3 Silent p.G276G 0.18 TCGA-D3-A51T-06 8 114111177 114111177 C T CSMD3 Missense_Mutation p.G242E 0.20 deleterious(0) probably_damaging(0.96) TCGA-D3-A51T-06 8 116574 116574 G A OR4F21 Missense_Mutation p.L151F 0.20 deleterious_low_confidence(0.02) benign(0.134) TCGA-D3-A51T-06 8 116631937 116631937 C G TRPS1 Missense_Mutation p.A130P 0.45 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D3-A51T-06 8 12595517 12595517 G A LONRF1 Missense_Mutation p.P367L 0.39 tolerated(0.77) benign(0) TCGA-D3-A51T-06 8 128428510 128428510 G A POU5F1B Silent p.P133P 0.54 TCGA-D3-A51T-06 8 139838948 139838948 C T COL22A1 Missense_Mutation p.E308K 0.38 unknown(0) TCGA-D3-A51T-06 8 142487888 142487888 G A MROH5 3'UTR 0.50 TCGA-D3-A51T-06 8 144803839 144803839 C T MAPK15 Missense_Mutation p.S442L 0.30 tolerated(0.25) benign(0.002) TCGA-D3-A51T-06 8 144940318 144940318 G A EPPK1 Silent p.F2368F 0.03 TCGA-D3-A51T-06 8 144990869 144990869 G A PLEC Silent p.L4511L 0.29 TCGA-D3-A51T-06 8 144990870 144990870 G A PLEC Silent p.A4510A 0.27 TCGA-D3-A51T-06 8 145746708 145746708 C T LRRC14 Missense_Mutation p.P443L 0.42 tolerated(0.14) benign(0.134) TCGA-D3-A51T-06 8 1497492 1497492 C T DLGAP2 Silent p.P211P 0.36 TCGA-D3-A51T-06 8 16012615 16012615 G A MSR1 Missense_Mutation p.P286S 0.44 tolerated(0.15) benign(0.038) TCGA-D3-A51T-06 8 16026231 16026231 C T MSR1 Silent p.E122E 0.33 TCGA-D3-A51T-06 8 1645433 1645433 G A DLGAP2 Missense_Mutation p.D893N 0.38 tolerated(1) benign(0.005) TCGA-D3-A51T-06 8 20075711 20075711 C T ATP6V1B2 Silent p.V438V 0.37 TCGA-D3-A51T-06 8 21973258 21973258 G A HR Silent p.F1175F 0.36 TCGA-D3-A51T-06 8 21997708 21997708 G A REEP4 Silent p.I53I 0.31 TCGA-D3-A51T-06 8 22069155 22069155 C T BMP1 Missense_Mutation p.H959Y 0.49 tolerated(0.13) benign(0.076) TCGA-D3-A51T-06 8 22161612 22161612 C T PIWIL2 Silent p.T420T 0.23 TCGA-D3-A51T-06 8 23243516 23243516 T C LOXL2 Intron 0.45 TCGA-D3-A51T-06 8 27463918 27463918 A T CLU Missense_Mutation p.F124I 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 8 27880861 27880861 C T NUGGC Silent p.K788K 0.33 TCGA-D3-A51T-06 8 2808668 2808668 C T CSMD1 Missense_Mutation p.S3390N 0.36 benign(0.029) TCGA-D3-A51T-06 8 2824233 2824233 C T CSMD1 Missense_Mutation p.G2987R 0.33 probably_damaging(0.998) TCGA-D3-A51T-06 8 33367357 33367357 C T TTI2 Silent p.R247R 0.43 TCGA-D3-A51T-06 8 33367358 33367358 C T TTI2 Missense_Mutation p.R247K 0.44 tolerated(0.33) benign(0.02) TCGA-D3-A51T-06 8 3432543 3432543 G A CSMD1 Missense_Mutation p.T423I 0.33 probably_damaging(0.913) TCGA-D3-A51T-06 8 35453107 35453107 A G UNC5D Missense_Mutation p.R168G 0.45 deleterious(0) benign(0.102) TCGA-D3-A51T-06 8 37730433 37730433 G A RAB11FIP1 Silent p.P629P 0.36 TCGA-D3-A51T-06 8 37730434 37730434 G A RAB11FIP1 Missense_Mutation p.P629L 0.37 deleterious(0.02) benign(0.215) TCGA-D3-A51T-06 8 39463875 39463875 G A ADAM18 Missense_Mutation p.G61E 0.21 tolerated(1) benign(0.001) TCGA-D3-A51T-06 8 39873203 39873203 G A IDO2 3'UTR 0.36 TCGA-D3-A51T-06 8 41122809 41122809 C T SFRP1 Silent p.K274K 0.41 TCGA-D3-A51T-06 8 41550196 41550196 G A ANK1 Silent p.F1317F 0.41 TCGA-D3-A51T-06 8 41552766 41552766 G A ANK1 Missense_Mutation p.S1056F 0.34 deleterious(0) probably_damaging(0.986) TCGA-D3-A51T-06 8 42586954 42586954 C T CHRNB3 Silent p.S168S 0.28 TCGA-D3-A51T-06 8 48883263 48883263 C T MCM4 Missense_Mutation p.L543F 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 8 49986633 49986633 C T C8orf22 Missense_Mutation p.S24L 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A51T-06 8 55538195 55538195 G A RP1 Missense_Mutation p.V585I 0.38 tolerated(0.79) benign(0.003) TCGA-D3-A51T-06 8 55540720 55540720 G A RP1 Silent p.R1426R 0.37 TCGA-D3-A51T-06 8 55541857 55541857 C T RP1 Silent p.L1805L 0.50 TCGA-D3-A51T-06 8 68993058 68993058 G A PREX2 Silent p.K621K 0.33 TCGA-D3-A51T-06 8 69017463 69017463 C T PREX2 Intron 0.38 TCGA-D3-A51T-06 8 73848702 73848702 C T KCNB2 Missense_Mutation p.S371L 0.37 deleterious(0) probably_damaging(0.983) TCGA-D3-A51T-06 8 75227656 75227656 G A JPH1 Silent p.F193F 0.27 TCGA-D3-A51T-06 8 77763549 77763549 C T ZFHX4 Silent p.P1464P 0.24 TCGA-D3-A51T-06 8 77767140 77767140 G A ZFHX4 Silent p.R2661R 0.35 TCGA-D3-A51T-06 8 86377599 86377599 A G CA2 Missense_Mutation p.K45E 0.36 tolerated(0.05) possibly_damaging(0.681) TCGA-D3-A51T-06 8 86393018 86393018 A G CA2 Silent p.%3D 0.29 TCGA-D3-A51T-06 8 87241946 87241946 C T SLC7A13 Silent p.K187K 0.36 TCGA-D3-A51T-06 8 87424091 87424091 C T WWP1 Missense_Mutation p.T350I 0.38 deleterious(0.01) benign(0.04) TCGA-D3-A51T-06 8 88365919 88365919 G A CNBD1 Missense_Mutation p.G403D 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 8 8887319 8887319 C T ERI1 Silent p.T275T 0.33 TCGA-D3-A51T-06 8 92998472 92998472 C T RUNX1T1 Missense_Mutation p.E398K 0.38 deleterious(0.03) possibly_damaging(0.722) TCGA-D3-A51T-06 8 95140406 95140406 G A CDH17 3'UTR 0.44 TCGA-D3-A51T-06 9 102590756 102590756 C T NR4A3 Silent p.T155T 0.84 TCGA-D3-A51T-06 9 107289444 107289444 C T OR13C4 Missense_Mutation p.G16E 0.70 deleterious(0.01) probably_damaging(1) TCGA-D3-A51T-06 9 107361691 107361691 C T OR13C5 Missense_Mutation p.E2K 0.68 tolerated(0.15) benign(0.004) TCGA-D3-A51T-06 9 115818916 115818916 C T ZFP37 Missense_Mutation p.R18Q 0.67 tolerated_low_confidence(0.21) benign(0.002) TCGA-D3-A51T-06 9 117027741 117027741 C T COL27A1 Missense_Mutation p.L1127F 0.47 possibly_damaging(0.887) TCGA-D3-A51T-06 9 119028186 119028186 G A PAPPA Missense_Mutation p.G928E 0.87 tolerated(0.06) benign(0.011) TCGA-D3-A51T-06 9 124979378 124979378 C T LHX6 Missense_Mutation p.M217I 0.60 deleterious(0.02) probably_damaging(0.993) TCGA-D3-A51T-06 9 125316063 125316063 C T OR1N2 Silent p.A205A 0.56 TCGA-D3-A51T-06 9 129831519 129831519 G A RALGPS1 Missense_Mutation p.R165Q 0.50 deleterious(0) benign(0.445) TCGA-D3-A51T-06 9 131085313 131085313 G A COQ4 Missense_Mutation p.R30K 0.70 tolerated(0.47) benign(0.013) TCGA-D3-A51T-06 9 136385356 136385356 C T TMEM8C Missense_Mutation p.D64N 0.64 deleterious(0.02) possibly_damaging(0.776) TCGA-D3-A51T-06 9 137623950 137623950 G A COL5A1 Missense_Mutation p.G456R 0.48 probably_damaging(1) TCGA-D3-A51T-06 9 139755189 139755189 C T MAMDC4 3'UTR 0.89 TCGA-D3-A51T-06 9 139907180 139907180 G A ABCA2 Missense_Mutation p.R1689C 0.56 deleterious(0.02) probably_damaging(0.969) TCGA-D3-A51T-06 9 18941723 18941723 G A FAM154A Silent p.P111P 0.39 TCGA-D3-A51T-06 9 2039582 2039582 C T SMARCA2 Missense_Mutation p.P158S 0.28 possibly_damaging(0.448) TCGA-D3-A51T-06 9 32630123 32630123 C T TAF1L Missense_Mutation p.E1819K 0.40 benign(0) TCGA-D3-A51T-06 9 32631485 32631485 G A TAF1L Missense_Mutation p.P1365S 0.46 deleterious(0) possibly_damaging(0.78) TCGA-D3-A51T-06 9 32634774 32634774 C T TAF1L Silent p.G268G 0.28 TCGA-D3-A51T-06 9 32634999 32634999 G A TAF1L Silent p.S193S 0.53 TCGA-D3-A51T-06 9 34709291 34709291 C T CCL21 3'UTR 0.45 TCGA-D3-A51T-06 9 35560511 35560511 C T RUSC2 Missense_Mutation p.P1292S 0.44 tolerated(0.19) probably_damaging(0.998) TCGA-D3-A51T-06 9 35794068 35794068 G A NPR2 Missense_Mutation p.E281K 0.47 tolerated(0.17) benign(0.082) TCGA-D3-A51T-06 9 3856009 3856009 C T GLIS3 Missense_Mutation p.G825R 0.50 deleterious(0) probably_damaging(0.945) TCGA-D3-A51T-06 9 39171455 39171455 C T CNTNAP3 Missense_Mutation p.G415D 0.38 tolerated(0.47) benign(0.02) TCGA-D3-A51T-06 9 69420398 69420398 C T ANKRD20A4 Missense_Mutation p.P430S 0.09 tolerated(0.12) benign(0.216) TCGA-D3-A51T-06 9 73151406 73151406 C T TRPM3 Silent p.R1529R 0.70 TCGA-D3-A51T-06 9 8331620 8331620 T C PTPRD Silent p.E1832E 0.37 TCGA-D3-A51T-06 9 8518223 8518223 C T PTPRD Missense_Mutation p.E390K 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-D3-A51T-06 9 93375880 93375880 G A DIRAS2 Missense_Mutation p.S77F 0.64 deleterious(0) probably_damaging(0.965) TCGA-D3-A51T-06 9 95992139 95992139 G A WNK2 Silent p.G281G 1.00 TCGA-D3-A51T-06 9 99521509 99521509 G A ZNF510 Nonsense_Mutation p.Q535* 0.69 TCGA-D3-A51T-06 X 10046892 10046892 G A WWC3 Missense_Mutation p.E92K 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 X 100490865 100490865 C T DRP2 Missense_Mutation p.T45I 0.30 tolerated_low_confidence(0.14) benign(0) TCGA-D3-A51T-06 X 100601521 100601521 G A TIMM8A Missense_Mutation p.S87F 0.35 tolerated(0.07) benign(0.006) TCGA-D3-A51T-06 X 100608963 100608963 C T BTK Missense_Mutation p.D549N 0.37 deleterious(0.04) possibly_damaging(0.681) TCGA-D3-A51T-06 X 100699069 100699069 T G RP1-164F3.8 RNA 0.30 TCGA-D3-A51T-06 X 100880948 100880948 C T ARMCX3 Nonsense_Mutation p.Q327* 0.38 TCGA-D3-A51T-06 X 101139700 101139700 G A ZMAT1 Silent p.A233A 0.35 TCGA-D3-A51T-06 X 101396314 101396314 C G TCEAL6 5'UTR 0.49 TCGA-D3-A51T-06 X 101970947 101970947 G A GPRASP2 Missense_Mutation p.E384K 0.32 deleterious(0.02) benign(0.424) TCGA-D3-A51T-06 X 105450013 105450013 C T MUM1L1 Silent p.F196F 0.42 TCGA-D3-A51T-06 X 107417842 107417842 C T COL4A6 Missense_Mutation p.G990E 0.20 probably_damaging(1) TCGA-D3-A51T-06 X 107417843 107417843 C A COL4A6 Nonsense_Mutation p.G990* 0.20 TCGA-D3-A51T-06 X 107802372 107802372 C T COL4A5 Missense_Mutation p.R74W 0.33 unknown(0) TCGA-D3-A51T-06 X 109697146 109697146 G A RGAG1 Missense_Mutation p.D1101N 0.35 tolerated(0.08) benign(0.323) TCGA-D3-A51T-06 X 110970246 110970246 C T ALG13 Missense_Mutation p.P647S 0.36 tolerated(0.75) benign(0.001) TCGA-D3-A51T-06 X 111019941 111019941 G A TRPC5 Missense_Mutation p.S841F 0.37 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-D3-A51T-06 X 11316866 11316866 C T AMELX Missense_Mutation p.H129Y 0.40 tolerated(0.19) unknown(0) TCGA-D3-A51T-06 X 115582805 115582805 G A SLC6A14 Missense_Mutation p.G377R 0.41 tolerated(0.07) benign(0.117) TCGA-D3-A51T-06 X 115582806 115582806 G A SLC6A14 Missense_Mutation p.G377E 0.41 tolerated(0.17) benign(0.029) TCGA-D3-A51T-06 X 115584239 115584239 C T SLC6A14 Missense_Mutation p.P406L 0.34 deleterious(0) probably_damaging(0.956) TCGA-D3-A51T-06 X 11682618 11682618 C T ARHGAP6 Missense_Mutation p.E111K 0.50 tolerated_low_confidence(0.11) benign(0.084) TCGA-D3-A51T-06 X 117044002 117044002 C T KLHL13 Missense_Mutation p.E213K 0.36 tolerated(0.38) benign(0.038) TCGA-D3-A51T-06 X 117706351 117706351 C T DOCK11 Silent p.F367F 0.46 TCGA-D3-A51T-06 X 118230538 118230538 G A KIAA1210 Silent p.T395T 0.41 TCGA-D3-A51T-06 X 118239074 118239074 G A KIAA1210 Missense_Mutation p.P317S 0.52 tolerated(0.26) possibly_damaging(0.54) TCGA-D3-A51T-06 X 118676541 118676541 C T CXorf56 Missense_Mutation p.R147Q 0.28 tolerated(0.16) benign(0.027) TCGA-D3-A51T-06 X 119059108 119059108 C A NKAP 3'UTR 0.50 TCGA-D3-A51T-06 X 119410842 119410842 G A TMEM255A Silent p.I215I 0.38 TCGA-D3-A51T-06 X 122747276 122747276 C T THOC2 Missense_Mutation p.D1551N 0.45 tolerated_low_confidence(0.13) benign(0.035) TCGA-D3-A51T-06 X 123505236 123505236 C T SH2D1A Missense_Mutation p.P128S 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A51T-06 X 123556299 123556299 G A TENM1 Silent p.L1432L 0.33 TCGA-D3-A51T-06 X 123556363 123556363 G A TENM1 Silent p.P1410P 0.38 TCGA-D3-A51T-06 X 12516831 12516831 C A FRMPD4 Missense_Mutation p.P25H 0.24 deleterious(0) possibly_damaging(0.855) TCGA-D3-A51T-06 X 125298807 125298807 G T DCAF12L2 Silent p.T367T 0.39 TCGA-D3-A51T-06 X 12735228 12735228 G A FRMPD4 Missense_Mutation p.E884K 0.45 deleterious(0) benign(0.297) TCGA-D3-A51T-06 X 12736261 12736261 G A FRMPD4 Missense_Mutation p.G1106R 0.37 tolerated_low_confidence(0.13) benign(0.123) TCGA-D3-A51T-06 X 128922472 128922472 G C SASH3 Silent p.G73G 0.33 TCGA-D3-A51T-06 X 129189888 129189888 T C BCORL1 Missense_Mutation p.I1638T 0.34 probably_damaging(0.998) TCGA-D3-A51T-06 X 12937325 12937325 G A TLR8 Missense_Mutation p.E56K 0.26 tolerated(0.12) benign(0.008) TCGA-D3-A51T-06 X 129373651 129373651 G A ZNF280C Missense_Mutation p.S133L 0.33 deleterious(0.01) benign(0.104) TCGA-D3-A51T-06 X 130218616 130218616 G A ARHGAP36 Silent p.G255G 0.39 TCGA-D3-A51T-06 X 130417024 130417024 G A IGSF1 Silent p.Y294Y 0.34 TCGA-D3-A51T-06 X 1317422 1317422 G A CRLF2 Missense_Mutation p.R215W 0.32 deleterious(0) probably_damaging(0.985) TCGA-D3-A51T-06 X 132438840 132438840 G A GPC4 Missense_Mutation p.S402F 0.43 deleterious(0) possibly_damaging(0.452) TCGA-D3-A51T-06 X 134483138 134483138 C T ZNF449 Missense_Mutation p.P153L 0.41 tolerated(0.41) benign(0.073) TCGA-D3-A51T-06 X 135427550 135427550 C T GPR112 Missense_Mutation p.S562F 0.18 tolerated(0.06) benign(0.197) TCGA-D3-A51T-06 X 135430098 135430098 G A GPR112 Silent p.Q1411Q 0.44 TCGA-D3-A51T-06 X 135431321 135431321 C T GPR112 Missense_Mutation p.S1819L 0.42 tolerated(1) benign(0.001) TCGA-D3-A51T-06 X 135593836 135593836 G A HTATSF1 Silent p.E644E 0.33 TCGA-D3-A51T-06 X 135764997 135764997 C T ARHGEF6 Missense_Mutation p.E467K 0.26 tolerated(0.51) benign(0.013) TCGA-D3-A51T-06 X 138914378 138914378 G A ATP11C 5'UTR 0.25 TCGA-D3-A51T-06 X 140984599 140984599 C T MAGEC3 Intron 0.40 TCGA-D3-A51T-06 X 140993283 140993283 C T MAGEC1 Silent p.S31S 0.34 TCGA-D3-A51T-06 X 140993296 140993296 C A MAGEC1 Missense_Mutation p.Q36K 0.32 deleterious_low_confidence(0.01) benign(0.042) TCGA-D3-A51T-06 X 140994610 140994610 C T MAGEC1 Missense_Mutation p.P474S 0.40 tolerated_low_confidence(0.22) possibly_damaging(0.641) TCGA-D3-A51T-06 X 142596840 142596840 G A SPANXN3 Missense_Mutation p.S77F 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 X 147733596 147733596 G A AFF2 Missense_Mutation p.D42N 0.49 tolerated(0.09) probably_damaging(0.995) TCGA-D3-A51T-06 X 149828167 149828167 G A MTM1 Missense_Mutation p.D431N 0.13 tolerated(0.08) probably_damaging(0.997) TCGA-D3-A51T-06 X 150908139 150908139 C T CNGA2 Silent p.L103L 0.37 TCGA-D3-A51T-06 X 150911612 150911612 G A CNGA2 Missense_Mutation p.D213N 0.30 tolerated(0.16) benign(0.056) TCGA-D3-A51T-06 X 151303402 151303402 G A MAGEA10 Silent p.L231L 0.51 TCGA-D3-A51T-06 X 151336926 151336926 T G GABRA3 Missense_Mutation p.K418T 0.49 tolerated(0.21) possibly_damaging(0.765) TCGA-D3-A51T-06 X 151899864 151899864 C T MAGEA12 Missense_Mutation p.E313K 0.26 tolerated(0.3) benign(0.081) TCGA-D3-A51T-06 X 152225435 152225435 A T PNMA3 Missense_Mutation p.D8V 0.33 deleterious(0) probably_damaging(0.994) TCGA-D3-A51T-06 X 152225436 152225436 C T PNMA3 Silent p.D8D 0.33 TCGA-D3-A51T-06 X 153069941 153069941 C T PDZD4 Missense_Mutation p.E393K 0.33 tolerated(0.05) possibly_damaging(0.822) TCGA-D3-A51T-06 X 153095780 153095780 G A PDZD4 5'UTR 0.34 TCGA-D3-A51T-06 X 153186111 153186111 G A ARHGAP4 Missense_Mutation p.S217F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A51T-06 X 153197787 153197787 G A NAA10 Missense_Mutation p.S108F 0.45 deleterious(0) probably_damaging(0.964) TCGA-D3-A51T-06 X 153533723 153533723 A G TKTL1 Missense_Mutation p.K68E 0.38 tolerated(0.1) benign(0.314) TCGA-D3-A51T-06 X 153697286 153697286 C T PLXNA3 Missense_Mutation p.R1470C 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A51T-06 X 154020553 154020553 G A MPP1 Missense_Mutation p.S37L 0.48 tolerated(0.56) benign(0.001) TCGA-D3-A51T-06 X 154736692 154736692 C T TMLHE Missense_Mutation p.E288K 0.37 tolerated(0.84) benign(0.01) TCGA-D3-A51T-06 X 15663086 15663086 A C TMEM27 Silent p.P90P 0.47 TCGA-D3-A51T-06 X 1584687 1584687 G A P2RY8 Silent p.F255F 0.29 TCGA-D3-A51T-06 X 17746424 17746424 A T NHS Missense_Mutation p.N1379Y 0.41 deleterious(0.05) benign(0.183) TCGA-D3-A51T-06 X 18323267 18323267 G A SCML2 Silent p.N185N 0.44 TCGA-D3-A51T-06 X 18911496 18911496 G A PHKA2 3'UTR 0.38 TCGA-D3-A51T-06 X 19390897 19390897 G A MAP3K15 Silent p.S994S 0.36 TCGA-D3-A51T-06 X 19428074 19428074 C T MAP3K15 Nonsense_Mutation p.W572* 0.20 TCGA-D3-A51T-06 X 20174290 20174290 G A RPS6KA3 Silent p.I679I 0.43 TCGA-D3-A51T-06 X 23398035 23398035 G A PTCHD1 Missense_Mutation p.E227K 0.39 tolerated(0.17) benign(0.182) TCGA-D3-A51T-06 X 23934380 23934380 C T CXorf58 Missense_Mutation p.L120F 0.28 tolerated(0.18) benign(0.274) TCGA-D3-A51T-06 X 26212923 26212923 C T MAGEB6 Silent p.I320I 0.40 TCGA-D3-A51T-06 X 30236701 30236701 C T MAGEB2 Missense_Mutation p.P2S 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A51T-06 X 30254048 30254048 C T MAGEB3 Missense_Mutation p.R3W 0.36 deleterious(0.03) possibly_damaging(0.643) TCGA-D3-A51T-06 X 31893359 31893359 C T DMD Silent p.R2348R 0.36 TCGA-D3-A51T-06 X 32364152 32364152 C T DMD Missense_Mutation p.D1832N 0.46 possibly_damaging(0.728) TCGA-D3-A51T-06 X 34148068 34148068 C T FAM47A Missense_Mutation p.M776I 0.48 tolerated(0.5) benign(0) TCGA-D3-A51T-06 X 34648488 34648488 G A TMEM47 Missense_Mutation p.S163L 0.35 tolerated(0.17) probably_damaging(0.988) TCGA-D3-A51T-06 X 3592716 3592716 G A PRKX Silent p.I86I 0.36 TCGA-D3-A51T-06 X 35993912 35993912 G A CXorf22 Missense_Mutation p.M865I 0.37 tolerated(0.54) benign(0.002) TCGA-D3-A51T-06 X 36083860 36083860 G A CHDC2 Missense_Mutation p.D15N 0.24 deleterious(0.05) possibly_damaging(0.738) TCGA-D3-A51T-06 X 36162769 36162769 G A CHDC2 Missense_Mutation p.R451Q 0.23 deleterious_low_confidence(0) benign(0.238) TCGA-D3-A51T-06 X 36162986 36162986 C T CHDC2 3'UTR 0.40 TCGA-D3-A51T-06 X 37027036 37027036 G A FAM47C Missense_Mutation p.E185K 0.30 tolerated(0.13) possibly_damaging(0.755) TCGA-D3-A51T-06 X 37027208 37027208 G A FAM47C Missense_Mutation p.G242E 0.31 tolerated(0.16) probably_damaging(0.988) TCGA-D3-A51T-06 X 37028726 37028726 C T FAM47C Missense_Mutation p.S748F 0.40 deleterious(0) possibly_damaging(0.831) TCGA-D3-A51T-06 X 43656435 43656435 G A MAOB Silent p.F185F 0.44 TCGA-D3-A51T-06 X 45013411 45013411 G A CXorf36 Silent p.P235P 0.45 TCGA-D3-A51T-06 X 46918377 46918377 G A JADE3 Silent p.R790R 0.46 TCGA-D3-A51T-06 X 47272937 47272937 C T ZNF157 Nonsense_Mutation p.Q489* 0.54 TCGA-D3-A51T-06 X 47464661 47464661 G A SYN1 Silent p.S215S 0.38 TCGA-D3-A51T-06 X 47466581 47466581 C T SYN1 Missense_Mutation p.G132R 0.20 deleterious(0) probably_damaging(0.963) TCGA-D3-A51T-06 X 47483643 47483643 G A CFP 3'UTR 0.41 TCGA-D3-A51T-06 X 47755315 47755315 G A ZNF81 Missense_Mutation p.E85K 0.21 tolerated(0.18) benign(0.001) TCGA-D3-A51T-06 X 48652530 48652530 C T GATA1 Missense_Mutation p.P401S 0.47 tolerated_low_confidence(0.11) benign(0) TCGA-D3-A51T-06 X 48780366 48780366 G A OTUD5 3'UTR 0.50 TCGA-D3-A51T-06 X 48931591 48931591 G A PRAF2 Missense_Mutation p.S19L 0.38 tolerated(0.16) benign(0.027) TCGA-D3-A51T-06 X 50121158 50121158 G A DGKK RNA 0.28 TCGA-D3-A51T-06 X 51641707 51641707 G A MAGED1 Silent p.R660R 0.38 TCGA-D3-A51T-06 X 52847253 52847253 A C XAGE5 3'UTR 0.36 TCGA-D3-A51T-06 X 53114471 53114471 G A TSPYL2 Silent p.R402R 0.27 TCGA-D3-A51T-06 X 53222467 53222467 C T KDM5C Silent p.L1455L 0.36 TCGA-D3-A51T-06 X 53565956 53565956 G A HUWE1 Silent p.S3906S 0.68 TCGA-D3-A51T-06 X 54143144 54143144 G A FAM120C Missense_Mutation p.R716W 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 X 55249119 55249119 G A PAGE5 Missense_Mutation p.G106S 0.36 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A51T-06 X 55650822 55650822 C T FOXR2 Silent p.F226F 0.34 TCGA-D3-A51T-06 X 55779873 55779873 G A RRAGB Missense_Mutation p.E249K 0.37 tolerated(0.07) benign(0.19) TCGA-D3-A51T-06 X 5811619 5811619 G A NLGN4X Missense_Mutation p.P564S 0.38 tolerated(0.58) probably_damaging(0.993) TCGA-D3-A51T-06 X 6069227 6069227 G A NLGN4X Missense_Mutation p.P94L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A51T-06 X 65392415 65392415 G A HEPH Missense_Mutation p.G183D 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A51T-06 X 65393459 65393459 G A HEPH Silent p.G201G 0.38 TCGA-D3-A51T-06 X 68382856 68382856 G A PJA1 Missense_Mutation p.R76C 0.48 tolerated(0.27) benign(0.004) TCGA-D3-A51T-06 X 68836180 68836180 G A EDA Missense_Mutation p.E10K 0.39 tolerated_low_confidence(0.18) unknown(0) TCGA-D3-A51T-06 X 70146884 70146884 G A SLC7A3 Missense_Mutation p.P432S 0.42 tolerated(0.06) possibly_damaging(0.764) TCGA-D3-A51T-06 X 70523173 70523173 G A ITGB1BP2 Missense_Mutation p.E127K 0.30 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A51T-06 X 70641224 70641224 G A TAF1 Missense_Mutation p.E1504K 0.33 deleterious(0.03) possibly_damaging(0.818) TCGA-D3-A51T-06 X 71350022 71350022 C T RGAG4 Missense_Mutation p.D457N 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A51T-06 X 73044609 73044609 C T XIST RNA 0.57 TCGA-D3-A51T-06 X 73066500 73066500 G A XIST RNA 0.40 TCGA-D3-A51T-06 X 73071070 73071070 C T XIST RNA 0.38 TCGA-D3-A51T-06 X 73961741 73961741 T C KIAA2022 Missense_Mutation p.N884S 0.33 tolerated(0.57) benign(0.003) TCGA-D3-A51T-06 X 73965507 73965507 C T KIAA2022 5'UTR 0.27 TCGA-D3-A51T-06 X 74494079 74494079 G A UPRT 5'UTR 0.37 TCGA-D3-A51T-06 X 78216491 78216491 C T P2RY10 Silent p.I158I 0.49 TCGA-D3-A51T-06 X 78426738 78426738 C T GPR174 Silent p.Y78Y 0.46 TCGA-D3-A51T-06 X 79279631 79279631 C T TBX22 Silent p.I142I 0.45 TCGA-D3-A51T-06 X 83352835 83352835 C T RPS6KA6 Missense_Mutation p.D600N 0.43 deleterious(0.05) possibly_damaging(0.474) TCGA-D3-A51T-06 X 83576808 83576808 G A HDX 3'UTR 0.60 TCGA-D3-A51T-06 X 84502582 84502582 G A ZNF711 Missense_Mutation p.D2N 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-D3-A51T-06 X 84520255 84520255 G A ZNF711 Missense_Mutation p.D304N 0.50 tolerated(0.06) probably_damaging(0.988) TCGA-D3-A51T-06 X 88009102 88009102 C T CPXCR1 Silent p.F229F 0.24 TCGA-D3-A51T-06 X 91090714 91090714 G A PCDH11X Missense_Mutation p.D71N 0.28 deleterious(0.04) possibly_damaging(0.898) TCGA-D3-A51T-06 X 91133281 91133281 C T PCDH11X Missense_Mutation p.S681F 0.41 deleterious(0) possibly_damaging(0.897) TCGA-D3-A5GL-06 10 105330842 105330842 T G NEURL1 Missense_Mutation p.V100G 0.40 deleterious(0) probably_damaging(0.974) TCGA-D3-A5GL-06 10 124350191 124350191 C T DMBT1 Silent p.S706S 0.35 TCGA-D3-A5GL-06 10 124917345 124917345 G A BUB3 Silent p.L122L 0.33 TCGA-D3-A5GL-06 10 23297853 23297853 G A ARMC3 Missense_Mutation p.G680R 0.23 tolerated(0.09) possibly_damaging(0.703) TCGA-D3-A5GL-06 10 29812909 29812909 T A SVIL Silent p.S878S 0.37 TCGA-D3-A5GL-06 10 34400461 34400461 G A PARD3 Missense_Mutation p.S1236F 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A5GL-06 10 47087023 47087023 C T NPY4R Silent p.I80I 0.13 TCGA-D3-A5GL-06 10 5950915 5950915 C T FBXO18 Nonsense_Mutation p.R312* 0.41 TCGA-D3-A5GL-06 10 60036937 60036960 ACAAAAGATTTTATGTTAAAGATC - CISD1 In_Frame_Del p.K32_H39del 0.43 TCGA-D3-A5GL-06 10 61958257 61958257 C T ANK3 Silent p.G510G 0.38 TCGA-D3-A5GL-06 10 62023607 62023607 C T ANK3 Missense_Mutation p.D229N 0.33 probably_damaging(0.999) TCGA-D3-A5GL-06 10 64913690 64913690 A - NRBF2 Frame_Shift_Del p.R193Gfs*7 0.23 TCGA-D3-A5GL-06 10 68139018 68139018 C T CTNNA3 Missense_Mutation p.G542S 0.39 deleterious(0) unknown(0) TCGA-D3-A5GL-06 10 73050720 73050720 C T UNC5B Missense_Mutation p.A383V 0.38 tolerated(0.07) benign(0.178) TCGA-D3-A5GL-06 10 75854133 75854133 C T VCL Missense_Mutation p.P486L 0.39 tolerated(0.36) probably_damaging(1) TCGA-D3-A5GL-06 10 7618599 7618599 C T ITIH5 Missense_Mutation p.E599K 0.33 tolerated(0.12) benign(0.098) TCGA-D3-A5GL-06 10 8006790 8006790 C T TAF3 Silent p.S439S 0.33 TCGA-D3-A5GL-06 10 94659424 94659424 G A EXOC6 Intron 0.38 TCGA-D3-A5GL-06 10 96741038 96741038 G A CYP2C9 Missense_Mutation p.E354K 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 10 97097017 97097017 G A SORBS1 Missense_Mutation p.P967L 0.32 deleterious(0.03) benign(0.002) TCGA-D3-A5GL-06 10 99359853 99359853 G A HOGA1 Silent p.K211K 0.35 TCGA-D3-A5GL-06 11 10052609 10052609 G A SBF2 Missense_Mutation p.P130S 0.37 tolerated(0.89) benign(0.027) TCGA-D3-A5GL-06 11 105009723 105009723 T C CARD18 Silent p.L30L 0.47 TCGA-D3-A5GL-06 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.39 tolerated(0.16) benign(0.04) TCGA-D3-A5GL-06 11 123484182 123484182 G A GRAMD1B Silent p.T538T 0.48 TCGA-D3-A5GL-06 11 126081576 126081576 G A FAM118B 5'UTR 0.39 TCGA-D3-A5GL-06 11 133807295 133807295 G A IGSF9B Missense_Mutation p.H219Y 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A5GL-06 11 133807296 133807296 G A IGSF9B Silent p.V218V 0.20 TCGA-D3-A5GL-06 11 17482118 17482118 C T ABCC8 Missense_Mutation p.D310N 0.42 deleterious(0.01) possibly_damaging(0.88) TCGA-D3-A5GL-06 11 20649599 20649599 C T SLC6A5 Missense_Mutation p.S490F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 11 32439182 32439182 C T WT1 Missense_Mutation p.M297I 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.554) TCGA-D3-A5GL-06 11 35706842 35706842 C T TRIM44 Silent p.I235I 0.44 TCGA-D3-A5GL-06 11 36596233 36596233 G A RAG1 Missense_Mutation p.G460E 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A5GL-06 11 36614779 36614779 T A RAG2 Missense_Mutation p.S314C 0.38 tolerated(0.16) probably_damaging(0.999) TCGA-D3-A5GL-06 11 428479 428479 G A ANO9 Missense_Mutation p.T394I 0.27 deleterious(0) possibly_damaging(0.896) TCGA-D3-A5GL-06 11 45868998 45868998 C T CRY2 Missense_Mutation p.A7V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GL-06 11 47744695 47744695 G A FNBP4 Missense_Mutation p.P880S 0.41 tolerated(0.11) benign(0.015) TCGA-D3-A5GL-06 11 4825016 4825016 G A OR52R1 Missense_Mutation p.R199C 0.41 tolerated(0.19) benign(0.082) TCGA-D3-A5GL-06 11 48510885 48510885 C T OR4A47 Missense_Mutation p.P181S 0.33 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-D3-A5GL-06 11 4903652 4903652 G A OR51T1 Missense_Mutation p.E202K 0.43 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A5GL-06 11 5247807 5247807 C T HBB Silent p.R105R 0.34 TCGA-D3-A5GL-06 11 55322161 55322161 T C OR4C15 Missense_Mutation p.S127P 0.05 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-D3-A5GL-06 11 56757252 56757252 A T OR5AK2 Missense_Mutation p.L288F 0.29 deleterious(0.04) benign(0.063) TCGA-D3-A5GL-06 11 58722282 58722282 C T GLYATL1 Missense_Mutation p.R107C 0.33 deleterious(0.05) benign(0.002) TCGA-D3-A5GL-06 11 61536764 61536764 C T MYRF Missense_Mutation p.S144F 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GL-06 11 62292039 62292039 G A AHNAK Missense_Mutation p.P3284S 0.36 possibly_damaging(0.803) TCGA-D3-A5GL-06 11 63137759 63137759 C T SLC22A9 Silent p.I77I 0.33 TCGA-D3-A5GL-06 11 63137793 63137793 C T SLC22A9 Missense_Mutation p.R89C 0.34 deleterious(0.02) benign(0.082) TCGA-D3-A5GL-06 11 66083748 66083748 C T CD248 Missense_Mutation p.D251N 0.41 tolerated(0.26) benign(0.039) TCGA-D3-A5GL-06 11 67767085 67767085 T C UNC93B1 Missense_Mutation p.N153S 0.31 deleterious(0.03) probably_damaging(0.98) TCGA-D3-A5GL-06 11 70007324 70007324 G C ANO1 Missense_Mutation p.A546P 0.55 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GL-06 11 70332489 70332489 C T SHANK2 Missense_Mutation p.M1304I 0.42 deleterious(0.01) benign(0) TCGA-D3-A5GL-06 11 75852428 75852428 C T UVRAG Missense_Mutation p.R691C 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A5GL-06 11 86663548 86663548 A C FZD4 Intron 0.39 TCGA-D3-A5GL-06 11 89868803 89868803 C T NAALAD2 Silent p.S53S 0.33 TCGA-D3-A5GL-06 12 10321753 10321753 G A OLR1 Missense_Mutation p.P33L 0.29 deleterious(0.04) benign(0.034) TCGA-D3-A5GL-06 12 104049291 104049291 T A STAB2 Missense_Mutation p.F556I 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 12 104078764 104078764 C T STAB2 Intron 0.43 TCGA-D3-A5GL-06 12 104106188 104106188 G A STAB2 Missense_Mutation p.A1460T 0.32 deleterious(0.01) benign(0.006) TCGA-D3-A5GL-06 12 113405393 113405393 C T OAS3 Nonsense_Mutation p.Q954* 0.36 TCGA-D3-A5GL-06 12 11461319 11461319 G A PRB4 Missense_Mutation p.P200S 0.42 tolerated_low_confidence(0.05) unknown(0) TCGA-D3-A5GL-06 12 117628131 117628131 C T FBXO21 Missense_Mutation p.C44Y 0.58 tolerated(0.57) benign(0.008) TCGA-D3-A5GL-06 12 118105430 118105430 C T KSR2 Silent p.K340K 0.25 TCGA-D3-A5GL-06 12 123460900 123460900 G A OGFOD2 5'UTR 0.25 TCGA-D3-A5GL-06 12 124267782 124267782 G A DNAH10 Missense_Mutation p.V263I 0.34 benign(0.006) TCGA-D3-A5GL-06 12 124332540 124332540 C T DNAH10 Silent p.A1831A 0.30 TCGA-D3-A5GL-06 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.31 probably_damaging(0.996) TCGA-D3-A5GL-06 12 18435240 18435240 G A PIK3C2G Silent p.G75G 0.35 TCGA-D3-A5GL-06 12 18435407 18435407 G A PIK3C2G Missense_Mutation p.G131E 0.37 tolerated_low_confidence(0.54) benign(0.025) TCGA-D3-A5GL-06 12 21422497 21422497 C T SLCO1A2 Silent p.L666L 0.28 TCGA-D3-A5GL-06 12 42858961 42858961 G A PRICKLE1 Missense_Mutation p.P292L 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 12 46205267 46205282 TCCAAAGCCACAGCTT - ARID2 Frame_Shift_Del p.P118Lfs*92 0.36 TCGA-D3-A5GL-06 12 46244258 46244258 T A ARID2 Silent p.P784P 0.49 TCGA-D3-A5GL-06 12 46287206 46287218 GCCAACTGTAGGG - ARID2 Frame_Shift_Del p.P1718Afs*13 0.38 TCGA-D3-A5GL-06 12 49420453 49420453 C T KMT2D Missense_Mutation p.G5099D 0.39 unknown(0) TCGA-D3-A5GL-06 12 51128913 51128913 G A DIP2B Silent p.K1367K 0.31 TCGA-D3-A5GL-06 12 51318957 51318957 A T METTL7A Missense_Mutation p.I46L 0.41 tolerated(0.47) benign(0.001) TCGA-D3-A5GL-06 12 53447585 53447585 A G TENC1 Missense_Mutation p.I107V 0.33 tolerated(0.48) benign(0.148) TCGA-D3-A5GL-06 12 54917264 54917264 G A NCKAP1L Silent p.E655E 0.36 TCGA-D3-A5GL-06 12 55863430 55863430 C T OR6C70 Missense_Mutation p.D165N 0.35 deleterious_low_confidence(0.03) benign(0.168) TCGA-D3-A5GL-06 12 56428832 56428832 C T IKZF4 Missense_Mutation p.P492L 0.45 tolerated(0.22) benign(0.321) TCGA-D3-A5GL-06 12 56826249 56826249 G A TIMELESS Silent p.G197G 0.36 TCGA-D3-A5GL-06 12 57963426 57963426 G A KIF5A Silent p.T359T 0.27 TCGA-D3-A5GL-06 12 675325 675325 C T NINJ2 Missense_Mutation p.R64K 0.46 deleterious(0.04) benign(0.167) TCGA-D3-A5GL-06 12 70149365 70149365 T G RAB3IP Missense_Mutation p.D75E 0.21 tolerated_low_confidence(0.19) benign(0.066) TCGA-D3-A5GL-06 12 70188971 70188971 C T RAB3IP Silent p.S261S 0.60 TCGA-D3-A5GL-06 12 71031154 71031154 C T PTPRB Missense_Mutation p.V8M 0.24 tolerated_low_confidence(0.12) benign(0.019) TCGA-D3-A5GL-06 12 72338092 72338092 G A TPH2 Missense_Mutation p.V92I 0.33 tolerated(0.38) benign(0.002) TCGA-D3-A5GL-06 12 7882201 7882201 G A CLEC4C Silent p.I211I 0.44 TCGA-D3-A5GL-06 12 80762069 80762069 G A OTOGL Missense_Mutation p.G2190R 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GL-06 12 8377426 8377426 C T FAM90A1 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.006) TCGA-D3-A5GL-06 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.21 tolerated(0.07) benign(0.183) TCGA-D3-A5GL-06 13 113699048 113699048 T C MCF2L Intron 0.68 TCGA-D3-A5GL-06 13 58299218 58299218 C T PCDH17 Silent p.F1090F 0.75 TCGA-D3-A5GL-06 13 79176588 79176588 A T POU4F1 Missense_Mutation p.H74Q 0.83 tolerated(0.21) possibly_damaging(0.707) TCGA-D3-A5GL-06 13 94482653 94482653 G T GPC6 Missense_Mutation p.C189F 0.73 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 14 102510944 102510944 T A DYNC1H1 Missense_Mutation p.F4305L 0.45 benign(0.364) TCGA-D3-A5GL-06 14 106494263 106494263 C T IGHV2-5 Missense_Mutation p.D77N 0.38 tolerated(0.34) benign(0.004) TCGA-D3-A5GL-06 14 19378524 19378524 G A OR11H12 Missense_Mutation p.E311K 0.53 deleterious(0) possibly_damaging(0.489) TCGA-D3-A5GL-06 14 20876165 20876165 T A TEP1 Missense_Mutation p.N145I 0.37 deleterious_low_confidence(0) benign(0.282) TCGA-D3-A5GL-06 14 21794180 21794180 T G RPGRIP1 Missense_Mutation p.F853C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 14 22102462 22102462 C T OR10G2 Silent p.V179V 0.36 TCGA-D3-A5GL-06 14 24679650 24679650 C T CHMP4A Missense_Mutation p.E215K 0.35 deleterious(0.01) benign(0.061) TCGA-D3-A5GL-06 14 24884798 24884798 G A NYNRIN Silent p.E1281E 0.37 TCGA-D3-A5GL-06 14 24885107 24885107 C T NYNRIN Silent p.L1384L 0.35 TCGA-D3-A5GL-06 14 38724358 38724358 C T CLEC14A Silent p.G290G 0.47 TCGA-D3-A5GL-06 14 39649733 39649733 T A PNN Missense_Mutation p.F274I 0.37 deleterious(0.04) possibly_damaging(0.735) TCGA-D3-A5GL-06 14 52182062 52182062 T C FRMD6 Missense_Mutation p.L290S 0.39 tolerated(0.16) possibly_damaging(0.543) TCGA-D3-A5GL-06 14 61190639 61190639 G A SIX4 Missense_Mutation p.P52S 0.49 tolerated_low_confidence(0.19) benign(0.197) TCGA-D3-A5GL-06 14 70634255 70634255 A C SLC8A3 Missense_Mutation p.H295Q 0.45 tolerated(0.42) benign(0.148) TCGA-D3-A5GL-06 14 71199977 71199977 G T MAP3K9 Missense_Mutation p.F717L 0.34 tolerated(1) possibly_damaging(0.845) TCGA-D3-A5GL-06 14 77732695 77732695 G A NGB 3'UTR 0.36 TCGA-D3-A5GL-06 14 77935676 77935676 C T AHSA1 3'UTR 0.35 TCGA-D3-A5GL-06 14 77948812 77948812 G A ISM2 Missense_Mutation p.P276S 0.35 tolerated(0.52) benign(0.004) TCGA-D3-A5GL-06 14 79432556 79432556 C T NRXN3 Missense_Mutation p.R489C 0.44 deleterious(0) probably_damaging(0.979) TCGA-D3-A5GL-06 14 86088099 86088099 C T FLRT2 Missense_Mutation p.P81S 0.38 deleterious(0) possibly_damaging(0.864) TCGA-D3-A5GL-06 14 92054374 92054374 G A CATSPERB Missense_Mutation p.P1002L 0.47 tolerated(0.17) benign(0.085) TCGA-D3-A5GL-06 14 92091262 92091262 G A CATSPERB Missense_Mutation p.P611L 0.33 deleterious(0.01) benign(0.172) TCGA-D3-A5GL-06 14 92091263 92091263 G A CATSPERB Missense_Mutation p.P611S 0.32 deleterious(0.01) benign(0.128) TCGA-D3-A5GL-06 14 92406930 92406930 G A FBLN5 Missense_Mutation p.R35C 0.33 deleterious(0.02) possibly_damaging(0.818) TCGA-D3-A5GL-06 14 94725156 94725156 G A PPP4R4 Missense_Mutation p.D683N 0.56 deleterious(0.03) possibly_damaging(0.809) TCGA-D3-A5GL-06 14 95030336 95030336 T C SERPINA4 Missense_Mutation p.Y173H 0.37 tolerated(0.66) benign(0) TCGA-D3-A5GL-06 14 95058762 95058762 G A SERPINA5 3'UTR 0.29 TCGA-D3-A5GL-06 15 20489461 20489461 C T CHEK2P2 RNA 0.17 TCGA-D3-A5GL-06 15 25444440 25444440 C T SNORD115-14 3'Flank 0.38 TCGA-D3-A5GL-06 15 25490679 25490679 C T SNORD115-41 RNA 0.44 TCGA-D3-A5GL-06 15 25490691 25490691 G A SNORD115-41 RNA 0.32 TCGA-D3-A5GL-06 15 34355398 34355398 C T CHRM5 Silent p.I160I 0.39 TCGA-D3-A5GL-06 15 39877722 39877722 A G THBS1 Missense_Mutation p.N360D 0.35 tolerated(0.07) benign(0.159) TCGA-D3-A5GL-06 15 41508898 41508898 G A EXD1 Missense_Mutation p.S61F 0.41 deleterious(0.03) possibly_damaging(0.553) TCGA-D3-A5GL-06 15 42436185 42436185 G A PLA2G4F Silent p.A711A 0.30 TCGA-D3-A5GL-06 15 43584242 43584242 C A TGM7 Missense_Mutation p.D165Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 15 43584243 43584243 T A TGM7 Silent p.R164R 0.35 TCGA-D3-A5GL-06 15 43827375 43827375 G A PPIP5K1 Missense_Mutation p.P1267S 0.38 tolerated_low_confidence(0.55) benign(0.001) TCGA-D3-A5GL-06 15 68446018 68446018 C T PIAS1 Missense_Mutation p.H307Y 0.43 tolerated(0.17) probably_damaging(0.968) TCGA-D3-A5GL-06 15 69341387 69341387 A T NOX5 Missense_Mutation p.E663V 0.18 tolerated(0.23) benign(0.291) TCGA-D3-A5GL-06 15 74702958 74702958 G A SEMA7A 3'UTR 0.36 TCGA-D3-A5GL-06 15 75500581 75500581 G A C15orf39 Missense_Mutation p.R731Q 0.55 tolerated(0.63) benign(0) TCGA-D3-A5GL-06 15 89381922 89381922 C T ACAN Silent p.I33I 0.35 TCGA-D3-A5GL-06 15 89388803 89388803 G A ACAN Silent p.Q373Q 0.35 TCGA-D3-A5GL-06 15 89395185 89395185 C T ACAN Silent p.I729I 0.58 TCGA-D3-A5GL-06 15 94882546 94882546 A G MCTP2 Missense_Mutation p.K222R 0.37 deleterious(0.03) possibly_damaging(0.823) TCGA-D3-A5GL-06 16 1270510 1270510 C T CACNA1H Missense_Mutation p.S2193L 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GL-06 16 1271001 1271001 G A CACNA1H 3'UTR 0.37 TCGA-D3-A5GL-06 16 19711759 19711759 G A C16orf62 Silent p.T1040T 0.31 TCGA-D3-A5GL-06 16 20856540 20856540 C T AC004381.6 Missense_Mutation p.P701S 0.31 tolerated(0.47) benign(0.001) TCGA-D3-A5GL-06 16 21147748 21147748 C T DNAH3 Silent p.L261L 0.32 TCGA-D3-A5GL-06 16 22558351 22558351 G A RP11-368J21.3 RNA 0.06 TCGA-D3-A5GL-06 16 23364245 23364245 G A SCNN1B Nonsense_Mutation p.W145* 0.43 TCGA-D3-A5GL-06 16 24166021 24166021 G A PRKCB Missense_Mutation p.R361Q 0.28 tolerated(0.16) benign(0.039) TCGA-D3-A5GL-06 16 24166132 24166132 G A PRKCB Missense_Mutation p.G398E 0.24 tolerated(0.67) benign(0.026) TCGA-D3-A5GL-06 16 2569325 2569325 T C RP11-20I23.1 Missense_Mutation p.W358R 0.40 unknown(0) TCGA-D3-A5GL-06 16 27561133 27561133 G A GTF3C1 Missense_Mutation p.R27W 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 16 28509528 28509528 G A APOBR Missense_Mutation p.E1028K 0.50 tolerated(0.06) unknown(0) TCGA-D3-A5GL-06 16 29818724 29818724 G A MAZ Silent p.R206R 0.41 TCGA-D3-A5GL-06 16 30779946 30779946 C T RNF40 Silent p.A662A 0.38 TCGA-D3-A5GL-06 16 31393158 31393158 T C ITGAX Missense_Mutation p.M1141T 0.44 deleterious(0.01) benign(0.237) TCGA-D3-A5GL-06 16 48177960 48177960 C T ABCC12 Missense_Mutation p.V46M 0.33 tolerated(0.19) benign(0.017) TCGA-D3-A5GL-06 16 4934359 4934359 C A PPL Nonsense_Mutation p.E1433* 0.41 TCGA-D3-A5GL-06 16 52472793 52472793 T A TOX3 3'UTR 0.34 TCGA-D3-A5GL-06 16 53262897 53262897 C T CHD9 Missense_Mutation p.S724F 0.31 probably_damaging(0.999) TCGA-D3-A5GL-06 16 57206236 57206238 TCA - FAM192A In_Frame_Del p.D91del 0.31 TCGA-D3-A5GL-06 16 67418797 67418797 T G LRRC36 Nonsense_Mutation p.Y690* 0.38 TCGA-D3-A5GL-06 16 67719524 67719524 G A GFOD2 Missense_Mutation p.A32V 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 16 69689637 69689637 A T NFAT5 Missense_Mutation p.E377D 0.36 probably_damaging(0.962) TCGA-D3-A5GL-06 16 71103196 71103196 G A HYDIN Missense_Mutation p.R650C 0.37 probably_damaging(0.992) TCGA-D3-A5GL-06 16 74955968 74955968 G A WDR59 Missense_Mutation p.P255S 0.24 deleterious(0.01) possibly_damaging(0.835) TCGA-D3-A5GL-06 16 80718758 80718758 T C CDYL2 Missense_Mutation p.K98R 0.47 tolerated(0.44) benign(0.004) TCGA-D3-A5GL-06 16 81180978 81180978 C T PKD1L2 RNA 0.46 TCGA-D3-A5GL-06 16 85696634 85696634 G A GSE1 Missense_Mutation p.E770K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GL-06 16 89348949 89348949 G A ANKRD11 Missense_Mutation p.P1334L 0.41 benign(0.002) TCGA-D3-A5GL-06 16 89348950 89348950 G A ANKRD11 Missense_Mutation p.P1334S 0.40 benign(0.005) TCGA-D3-A5GL-06 17 10395657 10395657 C T MYH1 3'UTR 0.43 TCGA-D3-A5GL-06 17 10541359 10541359 C T MYH3 Splice_Site p.X1243_splice 0.32 TCGA-D3-A5GL-06 17 19091479 19091479 C T SNORD3A RNA 0.11 TCGA-D3-A5GL-06 17 2226884 2226884 G A TSR1 3'UTR 0.47 TCGA-D3-A5GL-06 17 27437561 27437561 C T MYO18A Missense_Mutation p.G994S 0.38 tolerated(0.64) benign(0.053) TCGA-D3-A5GL-06 17 30376284 30376284 G A LRRC37B Silent p.L849L 0.38 TCGA-D3-A5GL-06 17 32598218 32598218 C T CCL7 Missense_Mutation p.P44S 0.24 tolerated(0.33) benign(0.393) TCGA-D3-A5GL-06 17 36925970 36925970 C T PIP4K2B Missense_Mutation p.E409K 0.36 deleterious(0.01) possibly_damaging(0.507) TCGA-D3-A5GL-06 17 38346934 38346934 G A RAPGEFL1 Missense_Mutation p.E213K 0.44 tolerated(0.56) benign(0.007) TCGA-D3-A5GL-06 17 3984774 3984774 G T ZZEF1 Missense_Mutation p.P909T 0.42 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GL-06 17 39925852 39925852 C A JUP Nonsense_Mutation p.E96* 0.44 TCGA-D3-A5GL-06 17 41020789 41020789 C T AOC4P RNA 0.31 TCGA-D3-A5GL-06 17 41108328 41108328 G A AARSD1 Missense_Mutation p.R186W 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GL-06 17 42882272 42882272 G A GJC1 Missense_Mutation p.S305F 0.36 deleterious(0.02) benign(0.352) TCGA-D3-A5GL-06 17 46030548 46030548 G A PRR15L Missense_Mutation p.S18F 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A5GL-06 17 4711379 4711379 G A PLD2 Silent p.V70V 0.39 TCGA-D3-A5GL-06 17 59962266 59962266 C T INTS2 Silent p.L703L 0.35 TCGA-D3-A5GL-06 17 61995792 61995792 T C GH1 Missense_Mutation p.T29A 0.40 tolerated(0.74) benign(0.001) TCGA-D3-A5GL-06 17 62018539 62018539 C T SCN4A Missense_Mutation p.M1701I 0.32 tolerated(0.11) benign(0.003) TCGA-D3-A5GL-06 17 63193346 63193346 G A RGS9 Silent p.K321K 0.42 TCGA-D3-A5GL-06 17 66873807 66873807 C T ABCA8 Missense_Mutation p.G1311E 0.43 deleterious(0.02) probably_damaging(0.973) TCGA-D3-A5GL-06 17 71232534 71232534 G A C17orf80 Missense_Mutation p.E305K 0.44 tolerated(0.06) benign(0.056) TCGA-D3-A5GL-06 17 73164461 73164461 G A SUMO2 Silent p.F87F 0.44 TCGA-D3-A5GL-06 17 74719898 74719898 G A JMJD6 Missense_Mutation p.P254L 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A5GL-06 17 7724583 7724583 G T DNAH2 Nonsense_Mutation p.E3680* 0.36 TCGA-D3-A5GL-06 17 78169401 78169401 G C CARD14 Missense_Mutation p.G515A 0.36 tolerated(0.26) benign(0.098) TCGA-D3-A5GL-06 17 7826286 7826286 G A KCNAB3 3'UTR 0.50 TCGA-D3-A5GL-06 17 7827358 7827358 G A KCNAB3 Silent p.Y285Y 0.34 TCGA-D3-A5GL-06 17 8006773 8006773 G A ALOXE3 Silent p.S740S 0.41 TCGA-D3-A5GL-06 17 8222094 8222094 G A ARHGEF15 Silent p.R633R 0.32 TCGA-D3-A5GL-06 17 8738761 8738761 G A PIK3R6 Silent p.F158F 0.46 TCGA-D3-A5GL-06 17 8794121 8794121 G A PIK3R5 Silent p.L197L 0.58 TCGA-D3-A5GL-06 18 12348319 12348319 G A AFG3L2 Missense_Mutation p.S539F 0.44 tolerated(0.17) benign(0.005) TCGA-D3-A5GL-06 18 23866290 23866290 G A TAF4B Missense_Mutation p.E473K 0.38 tolerated(0.23) benign(0.017) TCGA-D3-A5GL-06 18 30873195 30873195 C T CCDC178 Silent p.K368K 0.35 TCGA-D3-A5GL-06 18 31324403 31324403 G A ASXL3 Missense_Mutation p.E1531K 0.33 benign(0.254) TCGA-D3-A5GL-06 18 31326362 31326362 C T ASXL3 Missense_Mutation p.P2184S 0.39 benign(0.011) TCGA-D3-A5GL-06 18 45374899 45374899 A C SMAD2 Nonsense_Mutation p.L315* 0.42 TCGA-D3-A5GL-06 18 50985631 50985631 G A DCC Missense_Mutation p.R1141K 0.37 tolerated(1) possibly_damaging(0.688) TCGA-D3-A5GL-06 18 5291481 5291481 A G ZBTB14 Silent p.N242N 0.41 TCGA-D3-A5GL-06 18 60985872 60985872 C T BCL2 Missense_Mutation p.D10N 0.38 tolerated(0.12) possibly_damaging(0.804) TCGA-D3-A5GL-06 18 63489462 63489462 T C CDH7 Silent p.D257D 0.29 TCGA-D3-A5GL-06 18 7009357 7009357 C T LAMA1 Nonsense_Mutation p.W1294* 0.28 TCGA-D3-A5GL-06 18 7231246 7231246 G A LRRC30 Missense_Mutation p.G37E 0.31 tolerated(0.27) probably_damaging(0.999) TCGA-D3-A5GL-06 19 11660173 11660173 G A CNN1 Missense_Mutation p.M179I 0.37 deleterious(0) possibly_damaging(0.803) TCGA-D3-A5GL-06 19 12060313 12060313 C T ZNF700 Missense_Mutation p.H492Y 0.36 deleterious(0) benign(0.136) TCGA-D3-A5GL-06 19 12881844 12881844 C T HOOK2 Silent p.E268E 0.32 TCGA-D3-A5GL-06 19 13419282 13419282 C T CACNA1A Missense_Mutation p.G577R 0.23 probably_damaging(0.998) TCGA-D3-A5GL-06 19 15491368 15491368 T C AKAP8L Missense_Mutation p.N531S 0.42 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GL-06 19 16860407 16860407 C T NWD1 Silent p.L318L 0.38 TCGA-D3-A5GL-06 19 19369576 19369576 G A HAPLN4 Silent p.I191I 0.33 TCGA-D3-A5GL-06 19 19744891 19744891 G A GMIP Silent p.I731I 0.32 TCGA-D3-A5GL-06 19 22785641 22785641 C T AC011467.1 3'Flank 0.26 TCGA-D3-A5GL-06 19 33324149 33324149 C T SLC7A9 Nonsense_Mutation p.W435* 0.26 TCGA-D3-A5GL-06 19 35616208 35616208 G A LGI4 Silent p.A501A 0.48 TCGA-D3-A5GL-06 19 36340038 36340038 C T NPHS1 Silent p.P284P 0.26 TCGA-D3-A5GL-06 19 37117340 37117340 C G ZNF382 Missense_Mutation p.P181A 0.18 tolerated(0.26) benign(0.001) TCGA-D3-A5GL-06 19 37644152 37644152 T A ZNF585A Missense_Mutation p.S162C 0.43 tolerated(0.05) benign(0.03) TCGA-D3-A5GL-06 19 37677079 37677079 G A ZNF585B Missense_Mutation p.H454Y 0.42 tolerated(0.7) probably_damaging(0.968) TCGA-D3-A5GL-06 19 39336517 39336517 C T HNRNPL Silent p.L200L 0.39 TCGA-D3-A5GL-06 19 4222685 4222685 G A ANKRD24 Missense_Mutation p.E1064K 0.30 deleterious(0) probably_damaging(0.985) TCGA-D3-A5GL-06 19 44591031 44591031 C T ZNF284 Missense_Mutation p.A467V 0.42 tolerated(0.14) possibly_damaging(0.627) TCGA-D3-A5GL-06 19 44591032 44591032 C T ZNF284 Silent p.A467A 0.40 TCGA-D3-A5GL-06 19 45026919 45026919 G A CEACAM20 RNA 0.38 TCGA-D3-A5GL-06 19 47879315 47879315 C T DHX34 Silent p.V814V 0.48 TCGA-D3-A5GL-06 19 47879316 47879316 C T DHX34 Missense_Mutation p.P815S 0.48 tolerated(0.07) probably_damaging(0.984) TCGA-D3-A5GL-06 19 50156274 50156274 C T SCAF1 Silent p.F876F 0.35 TCGA-D3-A5GL-06 19 50214046 50214046 G A CPT1C Missense_Mutation p.E600K 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GL-06 19 51022129 51022129 C T LRRC4B Missense_Mutation p.E281K 0.27 deleterious(0.01) probably_damaging(0.911) TCGA-D3-A5GL-06 19 51220062 51220062 C G SHANK1 Missense_Mutation p.G39R 0.42 probably_damaging(0.979) TCGA-D3-A5GL-06 19 52249630 52249630 G A FPR1 Silent p.F206F 0.40 TCGA-D3-A5GL-06 19 52856990 52856990 C T ZNF610 Missense_Mutation p.S40F 0.21 tolerated(0.11) benign(0.006) TCGA-D3-A5GL-06 19 54567137 54567137 G A VSTM1 5'UTR 0.33 TCGA-D3-A5GL-06 19 55175721 55175721 G A LILRB4 Missense_Mutation p.R147Q 0.38 tolerated(0.72) benign(0.006) TCGA-D3-A5GL-06 19 55333135 55333135 G A KIR3DL1 Silent p.R257R 0.33 TCGA-D3-A5GL-06 19 55333136 55333136 G A KIR3DL1 Missense_Mutation p.E258K 0.34 tolerated(0.06) benign(0.031) TCGA-D3-A5GL-06 19 55377343 55377343 C T KIR3DL2 Missense_Mutation p.R362C 0.32 tolerated(0.06) benign(0.009) TCGA-D3-A5GL-06 19 55434939 55434939 G A NLRP7 3'UTR 0.60 TCGA-D3-A5GL-06 19 55493908 55493908 G A NLRP2 Missense_Mutation p.R281Q 0.34 tolerated(1) benign(0.001) TCGA-D3-A5GL-06 19 56114158 56114158 T C ZNF524 Missense_Mutation p.V227A 0.26 tolerated(0.75) benign(0) TCGA-D3-A5GL-06 19 57061948 57061948 G A ZFP28 Missense_Mutation p.R291Q 0.57 tolerated(0.56) benign(0.001) TCGA-D3-A5GL-06 19 58965615 58965615 C T ZNF324B Missense_Mutation p.R48C 0.78 tolerated(0.22) benign(0.001) TCGA-D3-A5GL-06 19 7267492 7267492 G A INSR Silent p.I172I 0.32 TCGA-D3-A5GL-06 19 7833951 7833951 C T CLEC4M 3'UTR 0.44 TCGA-D3-A5GL-06 19 9047696 9047696 G A MUC16 Missense_Mutation p.S11312L 0.28 benign(0.003) TCGA-D3-A5GL-06 19 9069397 9069397 C T MUC16 Missense_Mutation p.G6017R 0.32 unknown(0) TCGA-D3-A5GL-06 19 9083313 9083313 C T MUC16 Silent p.T2834T 0.31 TCGA-D3-A5GL-06 1 1018301 1018301 G A C1orf159 Missense_Mutation p.P190L 0.36 deleterious(0.01) benign(0) TCGA-D3-A5GL-06 1 1018302 1018302 G A C1orf159 Missense_Mutation p.P190S 0.36 tolerated(1) benign(0) TCGA-D3-A5GL-06 1 103354475 103354475 C T COL11A1 Missense_Mutation p.G1489R 0.29 unknown(0) TCGA-D3-A5GL-06 1 10720283 10720283 G A CASZ1 Silent p.T272T 0.42 TCGA-D3-A5GL-06 1 109714590 109714590 C T KIAA1324 Silent p.N190N 0.35 TCGA-D3-A5GL-06 1 113633937 113633937 C T LRIG2 Intron 0.38 TCGA-D3-A5GL-06 1 12359256 12359256 C T VPS13D Intron 0.35 TCGA-D3-A5GL-06 1 142713845 142713845 C T RP11-417J8.6 RNA 0.42 TCGA-D3-A5GL-06 1 151774481 151774481 C T LINGO4 Missense_Mutation p.E234K 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A5GL-06 1 155708099 155708099 G A DAP3 3'UTR 0.40 TCGA-D3-A5GL-06 1 157803152 157803152 G A CD5L Missense_Mutation p.S290F 0.36 deleterious(0) probably_damaging(0.956) TCGA-D3-A5GL-06 1 161017885 161017885 C T ARHGAP30 Missense_Mutation p.G976R 0.42 deleterious(0.05) benign(0.059) TCGA-D3-A5GL-06 1 16271318 16271318 A G ZBTB17 Missense_Mutation p.F315S 0.37 deleterious(0) probably_damaging(0.939) TCGA-D3-A5GL-06 1 163307814 163307814 C T NUF2 Missense_Mutation p.S147F 0.31 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A5GL-06 1 165173261 165173261 G A LMX1A Silent p.F335F 0.30 TCGA-D3-A5GL-06 1 16946323 16946323 C T RP5-1182A14.5 3'Flank 0.23 TCGA-D3-A5GL-06 1 17316751 17316751 G A ATP13A2 Silent p.A761A 0.46 TCGA-D3-A5GL-06 1 17674526 17674526 C T PADI4 Missense_Mutation p.P380S 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-D3-A5GL-06 1 176759002 176759002 T G PAPPA2 Missense_Mutation p.I1591M 0.38 tolerated(0.08) benign(0.031) TCGA-D3-A5GL-06 1 178745903 178745903 G A RALGPS2 Missense_Mutation p.D2N 0.25 deleterious_low_confidence(0.04) benign(0.017) TCGA-D3-A5GL-06 1 18702856 18702856 G A IGSF21 Silent p.G356G 0.32 TCGA-D3-A5GL-06 1 196918671 196918671 G A CFHR2 Missense_Mutation p.E49K 0.40 tolerated(1) benign(0.121) TCGA-D3-A5GL-06 1 197026490 197026490 A G F13B Missense_Mutation p.L304P 0.39 tolerated(0.28) benign(0.151) TCGA-D3-A5GL-06 1 202128723 202128723 G A PTPN7 Intron 0.57 TCGA-D3-A5GL-06 1 20302152 20302152 G A PLA2G2A 3'UTR 0.30 TCGA-D3-A5GL-06 1 204199581 204199581 C T PLEKHA6 Missense_Mutation p.S848N 0.43 tolerated(0.25) benign(0.002) TCGA-D3-A5GL-06 1 205744109 205744109 G A RAB7L1 5'UTR 0.35 TCGA-D3-A5GL-06 1 205819153 205819153 G T PM20D1 Silent p.L16L 0.32 TCGA-D3-A5GL-06 1 211093366 211093366 G A KCNH1 Missense_Mutation p.R360C 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A5GL-06 1 216538337 216538337 C T USH2A Missense_Mutation p.D248N 0.42 benign(0.049) TCGA-D3-A5GL-06 1 220100431 220100431 G A SLC30A10 Silent p.T219T 0.24 TCGA-D3-A5GL-06 1 220373902 220373902 G A RAB3GAP2 Intron 0.48 TCGA-D3-A5GL-06 1 220986731 220986731 G A MARC1 Missense_Mutation p.G329R 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 1 222919979 222919979 G A FAM177B Missense_Mutation p.G31E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 1 223176194 223176194 C T DISP1 Silent p.T485T 0.45 TCGA-D3-A5GL-06 1 228444456 228444456 G A OBSCN Missense_Mutation p.E1564K 0.44 possibly_damaging(0.571) TCGA-D3-A5GL-06 1 228548416 228548416 T G OBSCN Intron 0.24 TCGA-D3-A5GL-06 1 233086482 233086482 G A NTPCR Missense_Mutation p.G9E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 1 247201647 247201647 G A ZNF670 Silent p.L92L 0.35 TCGA-D3-A5GL-06 1 247614943 247614943 C T OR2B11 Silent p.T114T 0.50 TCGA-D3-A5GL-06 1 247615124 247615124 C T OR2B11 Missense_Mutation p.R54Q 0.47 tolerated(0.35) benign(0.002) TCGA-D3-A5GL-06 1 247978451 247978451 T A OR14A16 Missense_Mutation p.E194V 0.36 tolerated(0.05) possibly_damaging(0.896) TCGA-D3-A5GL-06 1 248525786 248525786 A T OR2T4 Nonsense_Mutation p.K302* 0.40 TCGA-D3-A5GL-06 1 248570260 248570260 A C OR2T1 Missense_Mutation p.K322T 0.44 deleterious(0.04) benign(0.25) TCGA-D3-A5GL-06 1 26516212 26516212 C T CNKSR1 3'UTR 0.50 TCGA-D3-A5GL-06 1 27683182 27683182 G A MAP3K6 Silent p.S1141S 0.41 TCGA-D3-A5GL-06 1 34049385 34049385 A C CSMD2 Missense_Mutation p.I2368S 0.27 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GL-06 1 34123663 34123663 C T CSMD2 Missense_Mutation p.G1404S 0.37 deleterious(0.01) probably_damaging(0.918) TCGA-D3-A5GL-06 1 34191037 34191037 A G CSMD2 Missense_Mutation p.F830L 0.39 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A5GL-06 1 35452748 35452748 G A ZMYM6 Missense_Mutation p.S1312F 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A5GL-06 1 37356552 37356552 G A GRIK3 Silent p.H87H 0.36 TCGA-D3-A5GL-06 1 40367181 40367181 C T MYCL Intron 0.18 TCGA-D3-A5GL-06 1 40928119 40928119 G A ZFP69B Missense_Mutation p.E155K 0.32 tolerated(0.21) benign(0.003) TCGA-D3-A5GL-06 1 43830935 43830935 C T ELOVL1 Silent p.R53R 0.41 TCGA-D3-A5GL-06 1 43830936 43830936 C T ELOVL1 Missense_Mutation p.R53Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 1 45484500 45484500 G A ZSWIM5 Missense_Mutation p.P1062S 0.40 tolerated(0.16) unknown(0) TCGA-D3-A5GL-06 1 47282778 47282778 T C CYP4B1 Missense_Mutation p.Y378H 0.40 tolerated(0.05) probably_damaging(0.964) TCGA-D3-A5GL-06 1 48699391 48699391 C T SLC5A9 Silent p.S391S 0.44 TCGA-D3-A5GL-06 1 51050354 51050354 C T FAF1 Intron 0.25 TCGA-D3-A5GL-06 1 52867040 52867040 C T ORC1 Missense_Mutation p.E73K 0.37 tolerated(0.1) possibly_damaging(0.61) TCGA-D3-A5GL-06 1 53680325 53680325 G A C1orf123 3'UTR 0.28 TCGA-D3-A5GL-06 1 54474567 54474567 C T LDLRAD1 3'UTR 0.35 TCGA-D3-A5GL-06 1 65332743 65332743 G A JAK1 Silent p.L266L 0.29 TCGA-D3-A5GL-06 1 66091824 66091824 G A LEPR Intron 0.37 TCGA-D3-A5GL-06 1 75038084 75038084 C T C1orf173 Missense_Mutation p.E1104K 0.37 tolerated(0.63) benign(0.006) TCGA-D3-A5GL-06 1 82432134 82432134 C T LPHN2 Silent p.F713F 0.32 TCGA-D3-A5GL-06 1 97270403 97270420 GCAGCTGCTGCAGCTGCT - PTBP2 In_Frame_Del p.A319_A324del 0.45 TCGA-D3-A5GL-06 20 1294101 1294101 C T SDCBP2 Silent p.P89P 0.31 TCGA-D3-A5GL-06 20 13830214 13830214 T G SEL1L2 Missense_Mutation p.T549P 0.36 tolerated_low_confidence(0.1) benign(0.424) TCGA-D3-A5GL-06 20 23858219 23858219 A T CST5 Missense_Mutation p.F90I 0.47 tolerated(1) benign(0.003) TCGA-D3-A5GL-06 20 23858220 23858220 C T CST5 Silent p.K89K 0.48 TCGA-D3-A5GL-06 20 2411598 2411598 C T TGM6 Missense_Mutation p.P631L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 20 2442573 2442573 G A SNRPB Intron 0.39 TCGA-D3-A5GL-06 20 3016448 3016448 C T PTPRA Missense_Mutation p.R687W 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 20 3274837 3274837 A C C20orf194 Missense_Mutation p.V729G 0.36 tolerated(0.08) benign(0.003) TCGA-D3-A5GL-06 20 42161441 42161441 G A L3MBTL1 Missense_Mutation p.G416D 0.46 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GL-06 20 44644942 44644942 G A MMP9 Missense_Mutation p.E687K 0.44 tolerated(0.2) benign(0.051) TCGA-D3-A5GL-06 20 5545700 5545700 G A GPCPD1 Missense_Mutation p.S431F 0.35 tolerated(0.77) benign(0.004) TCGA-D3-A5GL-06 20 61167920 61167920 C T C20orf166 3'UTR 0.50 TCGA-D3-A5GL-06 20 61391401 61391401 A C NTSR1 Missense_Mutation p.M347L 0.41 tolerated(0.1) benign(0.058) TCGA-D3-A5GL-06 20 9400534 9400534 T A PLCB4 Missense_Mutation p.I699N 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 20 9416235 9416235 G A PLCB4 Silent p.K839K 0.46 TCGA-D3-A5GL-06 21 10943004 10943004 G A TPTE Nonsense_Mutation p.R195* 0.19 TCGA-D3-A5GL-06 21 11058201 11058201 G A BAGE2 RNA 0.14 TCGA-D3-A5GL-06 21 16338386 16338386 G A NRIP1 Missense_Mutation p.R710C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 21 27254055 27254055 G A APP Missense_Mutation p.R747C 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 21 44324272 44324272 C T NDUFV3 Missense_Mutation p.P384S 0.38 deleterious(0.01) possibly_damaging(0.884) TCGA-D3-A5GL-06 21 45846587 45846587 G A TRPM2 Silent p.R1280R 0.31 TCGA-D3-A5GL-06 21 46957802 46957802 G A SLC19A1 Silent p.S24S 0.29 TCGA-D3-A5GL-06 21 47626600 47626600 G A LSS Missense_Mutation p.P517L 0.29 deleterious(0) possibly_damaging(0.891) TCGA-D3-A5GL-06 22 23967085 23967085 G A C22orf43 Missense_Mutation p.P95S 0.38 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-D3-A5GL-06 22 25011012 25011012 A G GGT1 Silent p.K100K 0.47 TCGA-D3-A5GL-06 22 31524139 31524139 C T INPP5J Intron 0.53 TCGA-D3-A5GL-06 22 32275614 32275614 C T DEPDC5 Silent p.L1294L 0.47 TCGA-D3-A5GL-06 22 35661213 35661213 C G HMGXB4 Missense_Mutation p.H278D 0.39 tolerated_low_confidence(0.07) benign(0.075) TCGA-D3-A5GL-06 22 37414218 37414218 C T TST Missense_Mutation p.G186R 0.38 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GL-06 22 38121291 38121291 C T TRIOBP Missense_Mutation p.P910S 0.39 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-D3-A5GL-06 22 40075862 40075862 G A CACNA1I Missense_Mutation p.D1844N 0.33 tolerated(0.1) possibly_damaging(0.555) TCGA-D3-A5GL-06 22 40757276 40757276 G T ADSL Splice_Site p.X265_splice 0.22 TCGA-D3-A5GL-06 22 43243591 43243591 G A ARFGAP3 Silent p.T39T 0.34 TCGA-D3-A5GL-06 2 107029712 107029712 T A RGPD3 Missense_Mutation p.E1698D 0.75 deleterious_low_confidence(0) benign(0.217) TCGA-D3-A5GL-06 2 108487163 108487163 T C RGPD4 Silent p.G901G 0.84 TCGA-D3-A5GL-06 2 120194857 120194857 C T TMEM37 Silent p.S138S 0.78 TCGA-D3-A5GL-06 2 131704214 131704214 T C ARHGEF4 Intron 0.81 TCGA-D3-A5GL-06 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.76 probably_damaging(0.999) TCGA-D3-A5GL-06 2 171358320 171358320 G A MYO3B Silent p.R1105R 0.86 TCGA-D3-A5GL-06 2 185802855 185802855 C T ZNF804A Missense_Mutation p.S911F 0.72 tolerated(0.64) probably_damaging(0.979) TCGA-D3-A5GL-06 2 196545449 196545449 T C SLC39A10 Missense_Mutation p.L228P 0.31 tolerated(0.29) benign(0) TCGA-D3-A5GL-06 2 196651860 196651860 G A DNAH7 Silent p.F3584F 0.75 TCGA-D3-A5GL-06 2 196722110 196722110 G A DNAH7 Missense_Mutation p.S2802L 0.66 tolerated(0.07) benign(0.209) TCGA-D3-A5GL-06 2 196741275 196741275 T C DNAH7 Missense_Mutation p.K2037R 0.79 deleterious(0.02) benign(0.33) TCGA-D3-A5GL-06 2 197183898 197183898 C T HECW2 Silent p.E572E 0.75 TCGA-D3-A5GL-06 2 21258488 21258488 C T APOB Silent p.K262K 0.79 TCGA-D3-A5GL-06 2 215846992 215846992 C G ABCA12 Missense_Mutation p.V1500L 0.76 deleterious(0) possibly_damaging(0.816) TCGA-D3-A5GL-06 2 218712359 218712359 G C TNS1 Missense_Mutation p.P836A 0.85 tolerated(0.22) possibly_damaging(0.744) TCGA-D3-A5GL-06 2 219527664 219527664 G A BCS1L Silent p.L316L 0.80 TCGA-D3-A5GL-06 2 228153911 228153911 G A COL4A3 Missense_Mutation p.G976E 0.93 unknown(0) TCGA-D3-A5GL-06 2 228497893 228497893 G A C2orf83 5'Flank 0.68 TCGA-D3-A5GL-06 2 234602173 234602173 C T UGT1A6 Missense_Mutation p.P175S 0.82 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GL-06 2 234637997 234637997 C T UGT1A3 Silent p.F75F 0.36 TCGA-D3-A5GL-06 2 27549472 27549472 C A GTF3C2 3'UTR 1.00 TCGA-D3-A5GL-06 2 27600690 27600690 T C ZNF513 Missense_Mutation p.N450D 0.80 tolerated(0.38) possibly_damaging(0.621) TCGA-D3-A5GL-06 2 37284566 37284566 G A HEATR5B Missense_Mutation p.S706L 0.87 tolerated(0.74) benign(0.037) TCGA-D3-A5GL-06 3 10916678 10916678 C T SLC6A11 Silent p.I263I 0.14 TCGA-D3-A5GL-06 3 113528318 113528318 C T ATP6V1A 3'UTR 0.37 TCGA-D3-A5GL-06 3 121712024 121712024 C T ILDR1 Silent p.R524R 0.32 TCGA-D3-A5GL-06 3 121725865 121725865 C T ILDR1 Missense_Mutation p.D68N 0.33 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GL-06 3 122003562 122003562 G A CASR Missense_Mutation p.E931K 0.33 deleterious_low_confidence(0.02) benign(0.385) TCGA-D3-A5GL-06 3 126135159 126135159 G A CCDC37 Missense_Mutation p.E76K 0.50 deleterious(0) possibly_damaging(0.798) TCGA-D3-A5GL-06 3 126220131 126220131 G A UROC1 Missense_Mutation p.P359S 0.37 tolerated(0.58) benign(0.008) TCGA-D3-A5GL-06 3 132411611 132411611 T C NPHP3 Missense_Mutation p.M788V 0.35 deleterious(0.04) benign(0.002) TCGA-D3-A5GL-06 3 134322359 134322359 C T KY 3'UTR 0.36 TCGA-D3-A5GL-06 3 138738999 138738999 C T PRR23B Missense_Mutation p.D169N 0.45 tolerated(0.07) probably_damaging(0.966) TCGA-D3-A5GL-06 3 150459987 150459987 G A SIAH2 Missense_Mutation p.L306F 0.32 deleterious(0.05) benign(0.179) TCGA-D3-A5GL-06 3 151090363 151090363 A G MED12L Missense_Mutation p.K1190E 0.42 tolerated(1) benign(0) TCGA-D3-A5GL-06 3 151160920 151160920 T - IGSF10 Frame_Shift_Del p.T1939Pfs*5 0.28 TCGA-D3-A5GL-06 3 154056036 154056036 G A GPR149 Missense_Mutation p.P550S 0.37 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GL-06 3 164905723 164905723 A G SLITRK3 Missense_Mutation p.Y966H 0.43 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GL-06 3 172351831 172351831 A C NCEH1 Missense_Mutation p.Y261D 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 3 183382784 183382784 A T KLHL24 Missense_Mutation p.N394I 0.39 tolerated(0.1) benign(0.359) TCGA-D3-A5GL-06 3 184090874 184090874 C G THPO Silent p.L163L 0.35 TCGA-D3-A5GL-06 3 185643307 185643307 C T TRA2B Missense_Mutation p.R93Q 0.49 deleterious(0.03) unknown(0) TCGA-D3-A5GL-06 3 194080037 194080037 T A LRRC15 Missense_Mutation p.N585I 0.46 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A5GL-06 3 27478888 27478888 T C SLC4A7 Missense_Mutation p.E131G 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GL-06 3 2967440 2967440 G A CNTN4 Silent p.R445R 0.69 TCGA-D3-A5GL-06 3 32932856 32932856 G A TRIM71 Silent p.R720R 0.45 TCGA-D3-A5GL-06 3 35763134 35763134 C T ARPP21 Nonsense_Mutation p.R311* 0.48 TCGA-D3-A5GL-06 3 36879973 36879973 C T TRANK1 Missense_Mutation p.E1759K 0.60 tolerated(0.41) benign(0.003) TCGA-D3-A5GL-06 3 44541670 44541670 G A ZNF852 Missense_Mutation p.S200F 0.67 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GL-06 3 4714902 4714902 G A ITPR1 Missense_Mutation p.D748N 0.67 deleterious(0.03) possibly_damaging(0.756) TCGA-D3-A5GL-06 3 52454956 52454956 C T PHF7 Nonsense_Mutation p.Q151* 0.69 TCGA-D3-A5GL-06 3 52539134 52539134 C T STAB1 Missense_Mutation p.P498L 0.70 tolerated(0.37) benign(0.002) TCGA-D3-A5GL-06 3 52562323 52562323 G A NT5DC2 Missense_Mutation p.P216L 0.67 deleterious(0.03) benign(0.437) TCGA-D3-A5GL-06 3 53804506 53804506 T G CACNA1D Missense_Mutation p.M1344R 0.09 deleterious(0) probably_damaging(0.988) TCGA-D3-A5GL-06 3 56667652 56667652 T C FAM208A Missense_Mutation p.E1056G 0.14 deleterious(0.05) benign(0.398) TCGA-D3-A5GL-06 3 96706361 96706361 G A EPHA6 Missense_Mutation p.G213E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 3 97983531 97983531 G A OR5H6 Missense_Mutation p.A135T 0.25 deleterious(0) probably_damaging(0.97) TCGA-D3-A5GL-06 3 9960211 9960211 C T IL17RC Missense_Mutation p.S199F 0.61 deleterious(0) probably_damaging(0.943) TCGA-D3-A5GL-06 4 111397596 111397596 C T ENPEP Missense_Mutation p.S9F 0.42 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-D3-A5GL-06 4 114290802 114290802 C T ANK2 Silent p.S3817S 0.43 TCGA-D3-A5GL-06 4 139965950 139965950 C T CCRN4L Silent p.L206L 0.33 TCGA-D3-A5GL-06 4 139965951 139965951 C T CCRN4L Missense_Mutation p.L207F 0.33 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A5GL-06 4 146576597 146576597 C T MMAA 3'UTR 0.23 TCGA-D3-A5GL-06 4 159590801 159590801 C T C4orf46 Silent p.L102L 0.33 TCGA-D3-A5GL-06 4 166986934 166986934 T A TLL1 Missense_Mutation p.S703T 0.48 deleterious(0) probably_damaging(0.966) TCGA-D3-A5GL-06 4 166986974 166986974 A G TLL1 Missense_Mutation p.N716S 0.49 tolerated(0.13) benign(0.162) TCGA-D3-A5GL-06 4 166996050 166996050 G A TLL1 Missense_Mutation p.D737N 0.38 tolerated(0.6) benign(0.008) TCGA-D3-A5GL-06 4 169176903 169176903 T C DDX60 Silent p.K1172K 0.36 TCGA-D3-A5GL-06 4 175565068 175565068 T A GLRA3 Missense_Mutation p.I422F 0.25 deleterious(0.01) possibly_damaging(0.468) TCGA-D3-A5GL-06 4 183549964 183549964 T C TENM3 Missense_Mutation p.Y304H 0.29 tolerated(0.42) possibly_damaging(0.727) TCGA-D3-A5GL-06 4 187455635 187455635 C T MTNR1A Silent p.S87S 0.42 TCGA-D3-A5GL-06 4 189026074 189026074 C T TRIML2 Missense_Mutation p.E18K 0.30 deleterious(0.02) benign(0.247) TCGA-D3-A5GL-06 4 2062819 2062819 C T NAT8L Silent p.I157I 0.31 TCGA-D3-A5GL-06 4 39000290 39000290 C T TMEM156 Missense_Mutation p.D110N 0.45 tolerated(0.33) possibly_damaging(0.455) TCGA-D3-A5GL-06 4 40776902 40776902 C T NSUN7 Missense_Mutation p.P254S 0.33 deleterious(0) possibly_damaging(0.748) TCGA-D3-A5GL-06 4 40776903 40776903 C T NSUN7 Missense_Mutation p.P254L 0.33 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GL-06 4 42454043 42454043 G A ATP8A1 Missense_Mutation p.H951Y 0.41 deleterious(0.01) possibly_damaging(0.885) TCGA-D3-A5GL-06 4 42627651 42627651 G A ATP8A1 Missense_Mutation p.L82F 0.32 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GL-06 4 56308643 56308643 G T CLOCK Silent p.T687T 0.37 TCGA-D3-A5GL-06 4 68691544 68691544 T A TMPRSS11D Missense_Mutation p.N334I 0.36 deleterious(0) probably_damaging(0.938) TCGA-D3-A5GL-06 4 74270081 74270081 T A ALB Missense_Mutation p.F13I 0.31 tolerated(0.06) benign(0.058) TCGA-D3-A5GL-06 4 76442155 76442155 T C THAP6 Missense_Mutation p.I85T 0.30 deleterious(0.01) possibly_damaging(0.551) TCGA-D3-A5GL-06 4 82010857 82010857 T A PRKG2 3'UTR 0.41 TCGA-D3-A5GL-06 4 95239110 95239110 G A HPGDS Missense_Mutation p.P47L 0.34 deleterious(0.01) possibly_damaging(0.553) TCGA-D3-A5GL-06 4 95239111 95239111 G A HPGDS Missense_Mutation p.P47S 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A5GL-06 4 9784947 9784947 G A DRD5 Missense_Mutation p.G432S 0.33 tolerated(0.99) benign(0.002) TCGA-D3-A5GL-06 4 98480099 98480099 G A STPG2 3'UTR 0.41 TCGA-D3-A5GL-06 5 120022027 120022027 G A PRR16 Missense_Mutation p.D157N 0.66 deleterious_low_confidence(0.05) possibly_damaging(0.56) TCGA-D3-A5GL-06 5 1232389 1232389 C T SLC6A18 Silent p.F72F 0.42 TCGA-D3-A5GL-06 5 13717491 13717491 T G DNAH5 Missense_Mutation p.N4213T 0.48 possibly_damaging(0.728) TCGA-D3-A5GL-06 5 140202563 140202563 G A PCDHA5 Silent p.K401K 0.52 TCGA-D3-A5GL-06 5 140213990 140213990 G A PCDHA7 Missense_Mutation p.D8N 0.66 tolerated_low_confidence(0.43) benign(0.002) TCGA-D3-A5GL-06 5 140474984 140474984 C T PCDHB2 Missense_Mutation p.R204C 0.38 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D3-A5GL-06 5 140537213 140537213 C T PCDHB17 Missense_Mutation p.A546V 0.62 deleterious_low_confidence(0.05) possibly_damaging(0.545) TCGA-D3-A5GL-06 5 140731360 140731360 C T PCDHGB1 Silent p.F511F 0.67 TCGA-D3-A5GL-06 5 140801768 140801768 G A PCDHGA11 Missense_Mutation p.G325D 0.55 deleterious_low_confidence(0.02) possibly_damaging(0.583) TCGA-D3-A5GL-06 5 153406841 153406841 G T FAM114A2 Silent p.T228T 0.75 TCGA-D3-A5GL-06 5 175572135 175572135 G A RP11-844P9.2 RNA 0.50 TCGA-D3-A5GL-06 5 178418504 178418504 A G GRM6 Missense_Mutation p.F260L 0.63 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A5GL-06 5 179564879 179564879 G A RASGEF1C Silent p.P58P 0.64 TCGA-D3-A5GL-06 5 179564880 179564880 G A RASGEF1C Missense_Mutation p.P58L 0.64 deleterious(0) probably_damaging(0.954) TCGA-D3-A5GL-06 5 23509152 23509152 G A PRDM9 Missense_Mutation p.E4K 0.31 tolerated_low_confidence(0.14) unknown(0) TCGA-D3-A5GL-06 5 31302335 31302335 G A CDH6 Missense_Mutation p.G310D 0.32 deleterious(0.04) possibly_damaging(0.598) TCGA-D3-A5GL-06 5 31316359 31316359 C T CDH6 Silent p.L479L 0.42 TCGA-D3-A5GL-06 5 35968128 35968128 C T UGT3A1 Missense_Mutation p.D102N 0.24 tolerated(0.53) benign(0.008) TCGA-D3-A5GL-06 5 36629559 36629559 C T SLC1A3 Silent p.I63I 0.43 TCGA-D3-A5GL-06 5 63905174 63905174 G T RGS7BP 3'UTR 0.78 TCGA-D3-A5GL-06 5 70845308 70845308 G A BDP1 Silent p.L2290L 0.67 TCGA-D3-A5GL-06 5 71500909 71500909 A G MAP1B Splice_Site p.X2418_splice 0.55 TCGA-D3-A5GL-06 5 72370607 72370607 C T FCHO2 Nonsense_Mutation p.Q540* 0.60 TCGA-D3-A5GL-06 5 78320152 78320152 A G DMGDH Missense_Mutation p.M731T 0.65 deleterious(0) possibly_damaging(0.686) TCGA-D3-A5GL-06 5 79032663 79032663 A G CMYA5 Missense_Mutation p.E2692G 0.12 unknown(0) TCGA-D3-A5GL-06 5 79355629 79355629 C T THBS4 Silent p.F296F 0.68 TCGA-D3-A5GL-06 5 94206163 94206163 C T MCTP1 Missense_Mutation p.E759K 0.76 deleterious(0.01) possibly_damaging(0.541) TCGA-D3-A5GL-06 6 117890746 117890746 G A GOPC Missense_Mutation p.L356F 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 6 126199464 126199464 A G NCOA7 Missense_Mutation p.N136S 0.64 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A5GL-06 6 128643452 128643452 G A PTPRK Missense_Mutation p.S76F 0.51 deleterious(0) benign(0.228) TCGA-D3-A5GL-06 6 131894455 131894455 T A ARG1 Silent p.I11I 0.53 TCGA-D3-A5GL-06 6 17779315 17779315 C T KIF13A Missense_Mutation p.E1319K 0.41 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GL-06 6 24559339 24559339 A C KIAA0319 Missense_Mutation p.V879G 0.16 deleterious(0) probably_damaging(0.961) TCGA-D3-A5GL-06 6 24596484 24596484 C T KIAA0319 Missense_Mutation p.D140N 0.29 deleterious(0.02) possibly_damaging(0.776) TCGA-D3-A5GL-06 6 27369105 27369105 C T ZNF391 Missense_Mutation p.S319F 0.35 tolerated(0.05) probably_damaging(0.917) TCGA-D3-A5GL-06 6 28294113 28294113 A G ZSCAN31 Missense_Mutation p.Y351H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GL-06 6 28500097 28500097 G A GPX5 Splice_Site p.X120_splice 0.35 TCGA-D3-A5GL-06 6 31895859 31895859 C T CFB Silent p.S58S 0.39 TCGA-D3-A5GL-06 6 33144972 33144972 G A COL11A2 Missense_Mutation p.P582S 0.35 possibly_damaging(0.803) TCGA-D3-A5GL-06 6 37606051 37606051 C T MDGA1 Silent p.G902G 0.44 TCGA-D3-A5GL-06 6 55406860 55406860 T A HMGCLL1 Nonsense_Mutation p.K93* 0.50 TCGA-D3-A5GL-06 6 55989073 55989073 C T COL21A1 Silent p.K556K 0.35 TCGA-D3-A5GL-06 6 72945378 72945378 C T RIMS1 Missense_Mutation p.L602F 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A5GL-06 6 7355291 7355291 G A CAGE1 Silent p.S784S 0.31 TCGA-D3-A5GL-06 6 7585391 7585391 C T DSP Silent p.S2632S 0.37 TCGA-D3-A5GL-06 6 75899096 75899096 C T COL12A1 Silent p.G220G 0.61 TCGA-D3-A5GL-06 6 94120131 94120131 A C EPHA7 Intron 0.70 TCGA-D3-A5GL-06 6 96034467 96034467 G A MANEA Missense_Mutation p.R51Q 0.73 tolerated(0.29) benign(0.004) TCGA-D3-A5GL-06 6 97717824 97717824 T C MMS22L Missense_Mutation p.I217M 0.65 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GL-06 7 100551652 100551652 C T MUC3A Missense_Mutation p.P135S 0.31 deleterious(0.02) possibly_damaging(0.857) TCGA-D3-A5GL-06 7 107415298 107415298 C T SLC26A3 Missense_Mutation p.R566Q 0.40 tolerated(0.06) benign(0.382) TCGA-D3-A5GL-06 7 129028959 129028959 T A AHCYL2 Missense_Mutation p.S180T 0.35 tolerated(0.11) benign(0.001) TCGA-D3-A5GL-06 7 129091562 129091562 C T STRIP2 Missense_Mutation p.A128V 0.30 tolerated(0.22) benign(0.1) TCGA-D3-A5GL-06 7 129091563 129091563 C T STRIP2 Silent p.A128A 0.32 TCGA-D3-A5GL-06 7 136699916 136699916 C G CHRM2 Missense_Mutation p.L102V 0.33 tolerated(0.24) benign(0.268) TCGA-D3-A5GL-06 7 137761275 137761275 G A AKR1D1 Missense_Mutation p.S4N 0.49 tolerated(0.55) benign(0.086) TCGA-D3-A5GL-06 7 141673247 141673247 G A TAS2R38 Silent p.F81F 0.38 TCGA-D3-A5GL-06 7 142020932 142020932 C T TRBV5-1 Silent p.L13L 0.44 TCGA-D3-A5GL-06 7 142206692 142206692 G A TRBV10-2 Nonsense_Mutation p.R55* 0.38 TCGA-D3-A5GL-06 7 142612202 142612202 G A TRPV5 Missense_Mutation p.S434F 0.24 tolerated(0.24) benign(0.002) TCGA-D3-A5GL-06 7 143141462 143141462 T G TAS2R60 Missense_Mutation p.V306G 0.29 tolerated(0.08) benign(0.012) TCGA-D3-A5GL-06 7 147600754 147600754 C T CNTNAP2 Silent p.I732I 0.48 TCGA-D3-A5GL-06 7 148951243 148951243 A T ZNF212 Missense_Mutation p.N409Y 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GL-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.41 tolerated(0.95) benign(0) TCGA-D3-A5GL-06 7 16841421 16841421 G A AGR2 5'UTR 0.40 TCGA-D3-A5GL-06 7 20721258 20721258 G A ABCB5 Missense_Mutation p.R613Q 0.34 tolerated(0.27) benign(0.002) TCGA-D3-A5GL-06 7 22162108 22162108 T A RAPGEF5 Missense_Mutation p.L703F 0.30 deleterious(0) possibly_damaging(0.878) TCGA-D3-A5GL-06 7 31016150 31016150 G A GHRHR Missense_Mutation p.E361K 0.29 deleterious(0) probably_damaging(0.936) TCGA-D3-A5GL-06 7 31682628 31682628 T C CCDC129 Silent p.H574H 0.39 TCGA-D3-A5GL-06 7 34889186 34889186 A G NPSR1 Intron 0.36 TCGA-D3-A5GL-06 7 40133782 40133782 G A CDK13 Missense_Mutation p.E1248K 0.46 tolerated_low_confidence(0.11) probably_damaging(0.987) TCGA-D3-A5GL-06 7 45108124 45108124 T G CCM2 Missense_Mutation p.S206R 0.38 tolerated(0.38) possibly_damaging(0.894) TCGA-D3-A5GL-06 7 6730689 6730689 T A ZNF12 Silent p.S628S 0.36 TCGA-D3-A5GL-06 7 72413525 72413525 G A POM121 Missense_Mutation p.G733E 0.17 deleterious(0.01) possibly_damaging(0.823) TCGA-D3-A5GL-06 7 72985290 72985290 G A TBL2 Silent p.V297V 0.32 TCGA-D3-A5GL-06 7 75625831 75625831 A G STYXL1 Silent p.T299T 0.40 TCGA-D3-A5GL-06 7 80456775 80456775 A C SEMA3C Missense_Mutation p.V98G 0.31 tolerated(0.2) possibly_damaging(0.688) TCGA-D3-A5GL-06 7 82595633 82595633 C T PCLO Silent p.V1157V 0.42 TCGA-D3-A5GL-06 7 84628980 84628980 C T SEMA3D Missense_Mutation p.D704N 0.39 tolerated(0.54) benign(0.328) TCGA-D3-A5GL-06 8 100133713 100133713 T A VPS13B Intron 0.33 TCGA-D3-A5GL-06 8 105361507 105361507 G A DCSTAMP Missense_Mutation p.E243K 0.44 tolerated(0.7) benign(0.098) TCGA-D3-A5GL-06 8 110131307 110131307 C T TRHR Silent p.L274L 0.37 TCGA-D3-A5GL-06 8 11628989 11628989 C T NEIL2 Silent p.H11H 0.49 TCGA-D3-A5GL-06 8 123964128 123964128 C T ZHX2 Silent p.S126S 0.45 TCGA-D3-A5GL-06 8 124988246 124988246 G A FER1L6 Silent p.A264A 0.40 TCGA-D3-A5GL-06 8 134108454 134108454 T G TG Missense_Mutation p.L2470R 0.40 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GL-06 8 139160865 139160865 A C FAM135B Missense_Mutation p.L1116V 0.42 tolerated(0.53) benign(0.018) TCGA-D3-A5GL-06 8 143562694 143562694 C T BAI1 Silent p.S636S 0.35 TCGA-D3-A5GL-06 8 145535651 145535651 C T HSF1 Missense_Mutation p.P288L 0.40 tolerated(0.17) benign(0.026) TCGA-D3-A5GL-06 8 23225915 23225915 G A LOXL2 5'UTR 0.30 TCGA-D3-A5GL-06 8 24193170 24193170 C T ADAM28 Intron 0.56 TCGA-D3-A5GL-06 8 24324436 24324436 G A ADAM7 Missense_Mutation p.E172K 0.40 tolerated(0.65) possibly_damaging(0.521) TCGA-D3-A5GL-06 8 24813676 24813676 C T CTD-2168K21.2 5'Flank 0.47 TCGA-D3-A5GL-06 8 25747315 25747315 T - EBF2 Frame_Shift_Del p.N235Tfs*61 0.28 TCGA-D3-A5GL-06 8 30942717 30942717 C T WRN Silent p.S462S 0.26 TCGA-D3-A5GL-06 8 32463201 32463201 G A NRG1 Missense_Mutation p.E134K 0.35 tolerated(0.24) benign(0.079) TCGA-D3-A5GL-06 8 32463202 32463202 G A NRG1 Splice_Site p.X134_splice 0.36 TCGA-D3-A5GL-06 8 36644890 36644890 C T KCNU1 Missense_Mutation p.R88C 0.35 deleterious(0) possibly_damaging(0.871) TCGA-D3-A5GL-06 8 3889434 3889434 A C CSMD1 Missense_Mutation p.F201L 0.36 benign(0.009) TCGA-D3-A5GL-06 8 39525647 39525647 G A ADAM18 Missense_Mutation p.G486E 0.36 tolerated(0.23) possibly_damaging(0.863) TCGA-D3-A5GL-06 8 49987823 49987823 C T C8orf22 3'UTR 0.35 TCGA-D3-A5GL-06 8 51415431 51415431 G A SNTG1 Missense_Mutation p.D153N 0.30 tolerated(0.12) possibly_damaging(0.76) TCGA-D3-A5GL-06 8 54142250 54142250 G A OPRK1 Silent p.I250I 0.30 TCGA-D3-A5GL-06 8 62479788 62479788 A G ASPH Silent p.D413D 0.41 TCGA-D3-A5GL-06 8 63976827 63976827 C T TTPA Missense_Mutation p.V201I 0.39 tolerated(0.88) benign(0) TCGA-D3-A5GL-06 8 67039423 67039423 C T TRIM55 5'UTR 0.38 TCGA-D3-A5GL-06 8 92982996 92982996 C T RUNX1T1 Missense_Mutation p.D488N 0.36 deleterious(0) benign(0.067) TCGA-D3-A5GL-06 9 100405573 100405573 T C NCBP1 Silent p.F104F 0.62 TCGA-D3-A5GL-06 9 104086391 104086391 C T LPPR1 3'UTR 0.36 TCGA-D3-A5GL-06 9 107298302 107298302 G A OR13C3 Missense_Mutation p.R265C 0.67 deleterious(0.04) benign(0.064) TCGA-D3-A5GL-06 9 108377612 108377612 G A FKTN Silent p.K278K 0.54 TCGA-D3-A5GL-06 9 109689832 109689832 G A ZNF462 Silent p.Q1213Q 0.69 TCGA-D3-A5GL-06 9 111970230 111970230 C T EPB41L4B Missense_Mutation p.E618K 0.63 deleterious(0.02) possibly_damaging(0.888) TCGA-D3-A5GL-06 9 113169455 113169455 C T SVEP1 Missense_Mutation p.G2809S 0.12 probably_damaging(1) TCGA-D3-A5GL-06 9 113169625 113169625 G A SVEP1 Missense_Mutation p.S2752F 0.54 probably_damaging(0.981) TCGA-D3-A5GL-06 9 113312238 113312238 C T SVEP1 Silent p.G226G 0.52 TCGA-D3-A5GL-06 9 120476083 120476084 - A TLR4 Frame_Shift_Ins p.Q562Tfs*9 0.18 TCGA-D3-A5GL-06 9 125289392 125289392 A T OR1N1 Missense_Mutation p.L61M 0.73 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GL-06 9 129596081 129596081 T A ZBTB43 Missense_Mutation p.N431K 0.50 tolerated(0.55) possibly_damaging(0.697) TCGA-D3-A5GL-06 9 140409901 140409901 G A PNPLA7 Silent p.S385S 0.78 TCGA-D3-A5GL-06 9 14722355 14722355 G A CER1 Missense_Mutation p.P106S 0.63 tolerated(0.26) benign(0.004) TCGA-D3-A5GL-06 9 21481263 21481263 A C IFNE Missense_Mutation p.V144G 0.62 deleterious(0) probably_damaging(0.93) TCGA-D3-A5GL-06 9 3288164 3288164 G A RFX3 Missense_Mutation p.A273V 0.74 deleterious(0.03) benign(0.41) TCGA-D3-A5GL-06 9 35092254 35092254 G A PIGO Missense_Mutation p.P544S 0.67 tolerated(0.23) benign(0.003) TCGA-D3-A5GL-06 9 71628154 71628154 G A PRKACG Silent p.L285L 0.57 TCGA-D3-A5GL-06 9 91949501 91949501 C T SECISBP2 Silent p.A315A 0.82 TCGA-D3-A5GL-06 9 95077871 95077871 G A NOL8 Missense_Mutation p.H346Y 0.47 deleterious(0.04) benign(0.035) TCGA-D3-A5GL-06 X 129474180 129474180 G C SLC25A14 5'UTR 0.88 TCGA-D3-A5GL-06 X 139866322 139866322 C A CDR1 Silent p.S70S 0.14 TCGA-D3-A5GL-06 X 151514133 151514133 G A GABRA3 Missense_Mutation p.T61I 0.79 deleterious(0.04) benign(0.303) TCGA-D3-A5GL-06 X 19482432 19482432 G A MAP3K15 Silent p.S206S 0.79 TCGA-D3-A5GL-06 X 35969446 35969446 C T CXorf22 Silent p.I285I 0.91 TCGA-D3-A5GL-06 X 47307745 47307745 G A ZNF41 Missense_Mutation p.S475F 0.73 tolerated(0.12) possibly_damaging(0.891) TCGA-D3-A5GL-06 X 54107879 54107879 G A FAM120C Missense_Mutation p.P952S 0.77 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A5GL-06 X 70470392 70470392 C A ZMYM3 Silent p.G321G 0.77 TCGA-D3-A5GL-06 X 72667221 72667221 C T CDX4 Silent p.F44F 0.78 TCGA-D3-A5GL-06 X 73961966 73961966 A C KIAA2022 Missense_Mutation p.V809G 0.68 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GL-06 X 92926850 92926850 G T NAP1L3 Missense_Mutation p.T485N 0.80 deleterious(0) probably_damaging(0.937) TCGA-D3-A5GL-06 Y 16952406 16952406 T G NLGN4Y Missense_Mutation p.I572S 0.76 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GL-06 Y 4968154 4968154 C T PCDH11Y Silent p.I845I 0.70 TCGA-D3-A5GN-06 10 101728986 101728986 G A DNMBP Missense_Mutation p.P52S 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 10 116061163 116061163 G A AFAP1L2 Missense_Mutation p.R498C 0.53 tolerated(0.1) benign(0.001) TCGA-D3-A5GN-06 10 128973907 128973907 C T FAM196A Silent p.T251T 0.50 TCGA-D3-A5GN-06 10 129681983 129681983 A C CLRN3 Missense_Mutation p.V129G 0.49 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GN-06 10 21120418 21120418 G A NEBL Missense_Mutation p.S515F 0.56 deleterious(0) probably_damaging(0.961) TCGA-D3-A5GN-06 10 38241319 38241319 G A ZNF25 Silent p.P369P 0.62 TCGA-D3-A5GN-06 10 50943158 50943158 T C OGDHL 3'UTR 0.41 TCGA-D3-A5GN-06 10 55569009 55569009 C T PCDH15 Missense_Mutation p.E535K 0.54 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GN-06 10 63852146 63852146 C T ARID5B Missense_Mutation p.S975L 0.52 deleterious(0) benign(0.014) TCGA-D3-A5GN-06 10 63957983 63957983 G A RTKN2 Missense_Mutation p.P505L 0.52 deleterious(0.02) possibly_damaging(0.452) TCGA-D3-A5GN-06 10 70229752 70229752 G A DNA2 Silent p.I167I 0.36 TCGA-D3-A5GN-06 10 89653814 89653814 C T PTEN Missense_Mutation p.P38S 0.31 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GN-06 10 96447945 96447945 G A CYP2C18 Missense_Mutation p.R132Q 0.58 deleterious(0.02) benign(0.432) TCGA-D3-A5GN-06 10 97810058 97810058 C T CCNJ Missense_Mutation p.L39F 0.44 tolerated(0.1) probably_damaging(0.961) TCGA-D3-A5GN-06 11 101375261 101375261 C T TRPC6 Missense_Mutation p.E147K 0.48 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GN-06 11 104915214 104915214 G A CARD16 Missense_Mutation p.S60F 0.48 tolerated(0.17) benign(0.345) TCGA-D3-A5GN-06 11 107506466 107506466 C T ELMOD1 Missense_Mutation p.P132L 0.16 tolerated(0.35) benign(0.009) TCGA-D3-A5GN-06 11 113816709 113816709 C T HTR3B Silent p.L392L 0.53 TCGA-D3-A5GN-06 11 118981581 118981581 C T C2CD2L Missense_Mutation p.P199S 0.45 tolerated(0.11) benign(0.002) TCGA-D3-A5GN-06 11 121348916 121348916 C T SORL1 Silent p.I164I 0.17 TCGA-D3-A5GN-06 11 121384959 121384959 G A SORL1 Silent p.L380L 0.61 TCGA-D3-A5GN-06 11 123909484 123909484 C T OR10G7 Silent p.T75T 0.22 TCGA-D3-A5GN-06 11 124252580 124252580 G A OR8B2 Silent p.F220F 0.46 TCGA-D3-A5GN-06 11 12923645 12923645 C T TEAD1 Silent p.F286F 0.51 TCGA-D3-A5GN-06 11 18231460 18231460 G A RP11-113D6.10 Silent p.T82T 0.60 TCGA-D3-A5GN-06 11 20648307 20648307 C T SLC6A5 Silent p.I438I 0.64 TCGA-D3-A5GN-06 11 28116278 28116278 A C KIF18A Missense_Mutation p.V132G 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GN-06 11 34226192 34226192 G A ABTB2 Missense_Mutation p.S310F 0.62 deleterious(0.02) benign(0.09) TCGA-D3-A5GN-06 11 4968181 4968181 G A OR51A4 Silent p.I50I 0.25 TCGA-D3-A5GN-06 11 4976794 4976794 G A OR51A2 Silent p.I50I 0.44 TCGA-D3-A5GN-06 11 57003303 57003303 C T APLNR 3'UTR 0.41 TCGA-D3-A5GN-06 11 5809341 5809341 G A OR52N1 Nonsense_Mutation p.R236* 0.71 TCGA-D3-A5GN-06 11 58207172 58207172 G A OR5B12 Silent p.F151F 0.48 TCGA-D3-A5GN-06 11 65349474 65349474 G C EHBP1L1 Missense_Mutation p.G444A 0.53 tolerated(0.07) possibly_damaging(0.577) TCGA-D3-A5GN-06 11 70201881 70201881 C T PPFIA1 Nonsense_Mutation p.R818* 0.50 TCGA-D3-A5GN-06 11 70332756 70332756 G A SHANK2 Silent p.S1215S 0.53 TCGA-D3-A5GN-06 11 71259856 71259856 C T KRTAP5-9 Silent p.A51A 0.58 TCGA-D3-A5GN-06 11 92531653 92531653 C T FAT3 Missense_Mutation p.T1825M 0.62 probably_damaging(0.993) TCGA-D3-A5GN-06 11 92714720 92714720 G A MTNR1B Missense_Mutation p.E111K 0.54 deleterious(0.02) benign(0.011) TCGA-D3-A5GN-06 11 94225925 94225925 G A MRE11A Intron 0.43 TCGA-D3-A5GN-06 12 101295467 101295467 C T ANO4 5'UTR 0.30 TCGA-D3-A5GN-06 12 101880630 101880630 C T SPIC 3'UTR 0.24 TCGA-D3-A5GN-06 12 108686266 108686266 C T CMKLR1 Missense_Mutation p.M158I 0.25 tolerated(0.38) benign(0.002) TCGA-D3-A5GN-06 12 109201509 109201509 C T SSH1 Missense_Mutation p.E211K 0.07 deleterious(0.01) benign(0.15) TCGA-D3-A5GN-06 12 109610100 109610100 C T ACACB Silent p.G352G 0.26 TCGA-D3-A5GN-06 12 118511787 118511787 G A VSIG10 Silent p.S312S 0.24 TCGA-D3-A5GN-06 12 123475205 123475205 G A PITPNM2 Missense_Mutation p.S819F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GN-06 12 123489977 123489977 G A PITPNM2 Silent p.S254S 0.16 TCGA-D3-A5GN-06 12 124335454 124335454 C T DNAH10 Missense_Mutation p.S1923F 0.31 benign(0.056) TCGA-D3-A5GN-06 12 125834450 125834450 G A TMEM132B Missense_Mutation p.E169K 0.32 deleterious(0) probably_damaging(0.915) TCGA-D3-A5GN-06 12 129558506 129558506 C T TMEM132D Missense_Mutation p.D1072N 0.25 tolerated(0.29) benign(0.105) TCGA-D3-A5GN-06 12 13724823 13724823 G A GRIN2B Missense_Mutation p.R696C 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GN-06 12 18747456 18747456 C T PIK3C2G Missense_Mutation p.S1306F 0.30 deleterious(0.02) possibly_damaging(0.908) TCGA-D3-A5GN-06 12 21015708 21015708 G A SLCO1B3 Missense_Mutation p.G216E 0.23 deleterious(0) possibly_damaging(0.497) TCGA-D3-A5GN-06 12 41966551 41966551 G A PDZRN4 Missense_Mutation p.G657E 0.14 tolerated(0.22) possibly_damaging(0.451) TCGA-D3-A5GN-06 12 43770451 43770451 T G ADAMTS20 Silent p.S1667S 0.42 TCGA-D3-A5GN-06 12 4600388 4600388 G A C12orf4 Missense_Mutation p.P485S 0.25 tolerated(0.25) benign(0.054) TCGA-D3-A5GN-06 12 46244858 46244858 C T ARID2 Silent p.V984V 0.34 TCGA-D3-A5GN-06 12 48142308 48142308 C T RAPGEF3 Missense_Mutation p.G391D 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 12 49168221 49168221 G A ADCY6 Silent p.S749S 0.35 TCGA-D3-A5GN-06 12 49444089 49444089 G A KMT2D Silent p.L1094L 0.33 TCGA-D3-A5GN-06 12 49579070 49579070 G A TUBA1A Missense_Mutation p.P360L 0.47 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-D3-A5GN-06 12 50186633 50186633 G A NCKAP5L Silent p.P1159P 0.12 TCGA-D3-A5GN-06 12 50388291 50388291 C T RACGAP1 Missense_Mutation p.G349E 0.35 tolerated(0.18) possibly_damaging(0.896) TCGA-D3-A5GN-06 12 51891000 51891000 G A SLC4A8 Intron 0.44 TCGA-D3-A5GN-06 12 53001742 53001742 G A KRT73 3'UTR 0.24 TCGA-D3-A5GN-06 12 53453062 53453062 G A TENC1 Missense_Mutation p.G556E 0.31 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GN-06 12 54797943 54797943 C T ITGA5 Silent p.G517G 0.30 TCGA-D3-A5GN-06 12 54903752 54903752 C T NCKAP1L Missense_Mutation p.P240S 0.38 tolerated(0.07) possibly_damaging(0.856) TCGA-D3-A5GN-06 12 56075839 56075839 C T METTL7B Missense_Mutation p.P101S 0.20 deleterious(0.01) possibly_damaging(0.897) TCGA-D3-A5GN-06 12 66725159 66725159 C T HELB Missense_Mutation p.P966S 0.41 tolerated(0.84) benign(0.008) TCGA-D3-A5GN-06 12 69656215 69656215 C T CPSF6 Missense_Mutation p.S511F 0.14 deleterious(0.01) unknown(0) TCGA-D3-A5GN-06 12 7242713 7242713 G A C1R Silent p.S120S 0.34 TCGA-D3-A5GN-06 12 88391839 88391839 C T C12orf50 Missense_Mutation p.E88K 0.30 deleterious(0) benign(0.281) TCGA-D3-A5GN-06 12 88566395 88566395 C T TMTC3 Missense_Mutation p.P358S 0.38 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GN-06 12 91348402 91348402 G A CCER1 Nonsense_Mutation p.R40* 0.21 TCGA-D3-A5GN-06 13 103317235 103317235 A G TPP2 Missense_Mutation p.M1098V 0.16 tolerated(0.18) benign(0.018) TCGA-D3-A5GN-06 13 110838762 110838762 G A COL4A1 Missense_Mutation p.P623S 0.61 possibly_damaging(0.559) TCGA-D3-A5GN-06 13 21265292 21265292 G A IFT88 Missense_Mutation p.G827E 0.61 deleterious(0.02) possibly_damaging(0.859) TCGA-D3-A5GN-06 13 25832756 25832756 C T MTMR6 Silent p.Q267Q 0.58 TCGA-D3-A5GN-06 13 28750652 28750652 C T PAN3 Missense_Mutation p.S192F 0.63 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A5GN-06 13 29598891 29598891 G A MTUS2 Missense_Mutation p.R29K 0.63 tolerated(0.06) benign(0.039) TCGA-D3-A5GN-06 13 37269126 37269126 G A SERTM1 5'UTR 0.64 TCGA-D3-A5GN-06 13 58240811 58240811 G A PCDH17 Missense_Mutation p.D881N 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A5GN-06 13 97485473 97485473 C T HS6ST3 3'UTR 0.73 TCGA-D3-A5GN-06 13 99515323 99515323 G A DOCK9 Nonsense_Mutation p.Q1177* 0.59 TCGA-D3-A5GN-06 14 101489752 101489752 C T MIR411 RNA 0.16 TCGA-D3-A5GN-06 14 106067895 106067895 G A IGHE Silent p.A57A 0.11 TCGA-D3-A5GN-06 14 106311889 106311889 G A IGHD Silent p.T41T 0.46 TCGA-D3-A5GN-06 14 106725435 106725435 G A IGHV3-23 Silent p.L39L 0.15 TCGA-D3-A5GN-06 14 19574288 19574288 C T POTEG Missense_Mutation p.P449S 0.20 deleterious(0.03) benign(0.044) TCGA-D3-A5GN-06 14 23862683 23862683 G A MYH6 Silent p.I991I 0.47 TCGA-D3-A5GN-06 14 24035405 24035405 G A AP1G2 Intron 0.47 TCGA-D3-A5GN-06 14 24879218 24879218 C T NYNRIN Nonsense_Mutation p.Q740* 0.13 TCGA-D3-A5GN-06 14 36946289 36946289 C T SFTA3 Missense_Mutation p.E50K 0.41 tolerated_low_confidence(0.17) possibly_damaging(0.486) TCGA-D3-A5GN-06 14 39583504 39583504 G A GEMIN2 5'UTR 0.13 TCGA-D3-A5GN-06 14 60063364 60063364 G A RTN1 3'UTR 0.44 TCGA-D3-A5GN-06 14 63417109 63417109 C T KCNH5 Missense_Mutation p.G371R 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GN-06 14 80669111 80669111 G A DIO2 Missense_Mutation p.S284F 0.33 tolerated(0.22) benign(0.001) TCGA-D3-A5GN-06 14 86089626 86089626 G A FLRT2 Missense_Mutation p.E590K 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GN-06 14 92139226 92139226 G A CATSPERB Silent p.Y371Y 0.49 TCGA-D3-A5GN-06 14 93264102 93264102 C A GOLGA5 Nonsense_Mutation p.S107* 0.45 TCGA-D3-A5GN-06 14 94156489 94156489 C T UNC79 Missense_Mutation p.S2233F 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GN-06 14 94716613 94716613 A G PPP4R4 Silent p.E572E 0.35 TCGA-D3-A5GN-06 14 95081172 95081172 G A SERPINA3 Missense_Mutation p.E132K 0.35 tolerated(0.16) benign(0.006) TCGA-D3-A5GN-06 14 96134470 96134470 G A TCL6 Intron 0.44 TCGA-D3-A5GN-06 14 96730546 96730546 G A BDKRB1 Missense_Mutation p.R176Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GN-06 15 22962274 22962274 A G CYFIP1 Missense_Mutation p.Q701R 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GN-06 15 25336983 25336983 G A SNORD116-23 RNA 0.35 TCGA-D3-A5GN-06 15 34640796 34640796 C T NUTM1 Missense_Mutation p.R215C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GN-06 15 41145988 41145988 C T SPINT1 Silent p.I274I 0.23 TCGA-D3-A5GN-06 15 41229062 41229062 C T DLL4 Missense_Mutation p.T626I 0.43 tolerated(0.18) benign(0.001) TCGA-D3-A5GN-06 15 43044283 43044283 G T TTBK2 Missense_Mutation p.P1054Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 15 50916399 50916399 G A TRPM7 Silent p.F468F 0.41 TCGA-D3-A5GN-06 15 54306810 54306810 C T UNC13C Silent p.F570F 0.39 TCGA-D3-A5GN-06 15 55722941 55722941 G A DYX1C1 Missense_Mutation p.P397L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 15 72639138 72639138 G A HEXA Intron 0.23 TCGA-D3-A5GN-06 15 78640443 78640443 C T CRABP1 3'UTR 0.33 TCGA-D3-A5GN-06 15 78882151 78882151 G A CHRNA5 Missense_Mutation p.D140N 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A5GN-06 15 79755472 79755472 C T KIAA1024 Silent p.L788L 0.16 TCGA-D3-A5GN-06 15 81271619 81271619 G A MESDC2 Silent p.L216L 0.26 TCGA-D3-A5GN-06 15 89195471 89195471 C T ISG20 Missense_Mutation p.A120V 0.18 deleterious(0.03) possibly_damaging(0.487) TCGA-D3-A5GN-06 15 89400535 89400535 G A ACAN Silent p.R1573R 0.39 TCGA-D3-A5GN-06 15 90246441 90246441 C T WDR93 Intron 0.25 TCGA-D3-A5GN-06 15 91182039 91182039 C T CRTC3 Missense_Mutation p.P514S 0.21 tolerated(0.93) benign(0.007) TCGA-D3-A5GN-06 15 95022258 95022258 C T MCTP2 Missense_Mutation p.L878F 0.27 deleterious(0) possibly_damaging(0.739) TCGA-D3-A5GN-06 15 97328415 97328415 G A SPATA8 3'UTR 0.21 TCGA-D3-A5GN-06 16 14312829 14312829 C T MKL2 Missense_Mutation p.P223S 0.07 tolerated(0.37) benign(0.047) TCGA-D3-A5GN-06 16 14976520 14976520 C T NOMO1 Missense_Mutation p.H1033Y 0.23 tolerated(0.75) benign(0.006) TCGA-D3-A5GN-06 16 1551673 1551673 C T TELO2 Silent p.L457L 0.29 TCGA-D3-A5GN-06 16 16251661 16251661 G A ABCC6 Silent p.P1247P 0.36 TCGA-D3-A5GN-06 16 2049600 2049600 G A ZNF598 Silent p.P650P 0.48 TCGA-D3-A5GN-06 16 20648726 20648726 G A ACSM1 Silent p.F388F 0.30 TCGA-D3-A5GN-06 16 20803445 20803445 C G ACSM3 Missense_Mutation p.S483C 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 16 22926895 22926895 G A HS3ST2 3'UTR 0.35 TCGA-D3-A5GN-06 16 23713508 23713508 G A ERN2 Missense_Mutation p.P438S 0.39 tolerated(0.34) benign(0.007) TCGA-D3-A5GN-06 16 28855288 28855288 G A TUFM Nonsense_Mutation p.Q353* 0.34 TCGA-D3-A5GN-06 16 30128290 30128290 G A MAPK3 Silent p.N314N 0.29 TCGA-D3-A5GN-06 16 30133335 30133335 G A MAPK3 Intron 0.34 TCGA-D3-A5GN-06 16 30666434 30666434 G A PRR14 Silent p.R381R 0.32 TCGA-D3-A5GN-06 16 31273112 31273112 G A ITGAM Missense_Mutation p.G43E 0.18 tolerated(0.11) benign(0.333) TCGA-D3-A5GN-06 16 31383818 31383818 C T ITGAX Silent p.Y760Y 0.35 TCGA-D3-A5GN-06 16 31500279 31500279 C T SLC5A2 Silent p.F453F 0.17 TCGA-D3-A5GN-06 16 31724741 31724741 C A ZNF720 5'UTR 0.27 TCGA-D3-A5GN-06 16 3299597 3299597 C T MEFV Missense_Mutation p.G365E 0.24 tolerated(0.18) benign(0.015) TCGA-D3-A5GN-06 16 33647492 33647492 G A RP11-812E19.9 Silent p.S36S 0.15 TCGA-D3-A5GN-06 16 3594308 3594308 C T NLRC3 Silent p.G977G 0.27 TCGA-D3-A5GN-06 16 3614067 3614067 C T NLRC3 Missense_Mutation p.E338K 0.38 tolerated(0.27) benign(0.015) TCGA-D3-A5GN-06 16 4924567 4924567 C T UBN1 Missense_Mutation p.A719V 0.34 tolerated(0.29) benign(0.002) TCGA-D3-A5GN-06 16 51174110 51174110 G A SALL1 Missense_Mutation p.P675S 0.13 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GN-06 16 55854304 55854304 C T CES1 Missense_Mutation p.D261N 0.10 tolerated(0.46) benign(0.001) TCGA-D3-A5GN-06 16 56947478 56947478 G A SLC12A3 3'UTR 0.27 TCGA-D3-A5GN-06 16 57059626 57059626 C T NLRC5 Silent p.F257F 0.32 TCGA-D3-A5GN-06 16 58163057 58163057 G A C16orf80 5'UTR 0.31 TCGA-D3-A5GN-06 16 66657376 66657376 G A CMTM4 Silent p.F131F 0.24 TCGA-D3-A5GN-06 16 67298300 67298300 G T SLC9A5 Nonsense_Mutation p.E630* 0.21 TCGA-D3-A5GN-06 16 67860896 67860896 G A TSNAXIP1 Missense_Mutation p.E475K 0.31 tolerated(0.16) benign(0.011) TCGA-D3-A5GN-06 16 69056765 69056765 C T TANGO6 Silent p.I959I 0.40 TCGA-D3-A5GN-06 16 70546218 70546218 C T COG4 Missense_Mutation p.R221H 0.33 deleterious(0) probably_damaging(0.925) TCGA-D3-A5GN-06 16 71318067 71318067 G A CMTR2 Missense_Mutation p.S586L 0.35 tolerated(0.11) benign(0.001) TCGA-D3-A5GN-06 16 75573845 75573845 G A TMEM231 3'UTR 0.33 TCGA-D3-A5GN-06 16 782347 782347 C T NARFL Missense_Mutation p.E284K 0.30 tolerated(0.37) benign(0.042) TCGA-D3-A5GN-06 16 81295790 81295790 C T BCMO1 Silent p.L125L 0.31 TCGA-D3-A5GN-06 16 815580 815580 C T MSLN Missense_Mutation p.P253L 0.18 deleterious(0.01) benign(0.195) TCGA-D3-A5GN-06 16 88968026 88968026 C T CBFA2T3 Missense_Mutation p.D64N 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.873) TCGA-D3-A5GN-06 17 10304459 10304459 C T MYH8 Missense_Mutation p.R1053K 0.24 tolerated(0.15) possibly_damaging(0.569) TCGA-D3-A5GN-06 17 10398350 10398350 C T MYH1 Silent p.K1788K 0.26 TCGA-D3-A5GN-06 17 10436868 10436868 G A MYH2 Silent p.S754S 0.44 TCGA-D3-A5GN-06 17 10451190 10451190 G A MYH2 Silent p.F16F 0.42 TCGA-D3-A5GN-06 17 16855866 16855866 C T TNFRSF13B Missense_Mutation p.M31I 0.43 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GN-06 17 20805938 20805938 G A RP11-344E13.3 RNA 0.12 TCGA-D3-A5GN-06 17 21147471 21147471 G A C17orf103 Missense_Mutation p.T57I 0.41 deleterious(0) probably_damaging(0.95) TCGA-D3-A5GN-06 17 2381162 2381162 G A METTL16 Missense_Mutation p.P49L 0.13 deleterious(0.02) possibly_damaging(0.529) TCGA-D3-A5GN-06 17 3477143 3477143 G A SHPK Silent p.N629N 0.08 TCGA-D3-A5GN-06 17 34881062 34881062 T C MYO19 Silent p.G137G 0.06 TCGA-D3-A5GN-06 17 38152539 38152539 C T PSMD3 Missense_Mutation p.A475V 0.38 tolerated(0.22) possibly_damaging(0.893) TCGA-D3-A5GN-06 17 39577166 39577166 C T KRT37 Silent p.G438G 0.22 TCGA-D3-A5GN-06 17 39577167 39577167 C T KRT37 Missense_Mutation p.G438E 0.23 tolerated(0.27) benign(0.025) TCGA-D3-A5GN-06 17 40318449 40318449 G A KCNH4 Missense_Mutation p.S569L 0.20 deleterious(0) probably_damaging(0.982) TCGA-D3-A5GN-06 17 40370239 40370239 G A STAT5B Missense_Mutation p.P367S 0.22 deleterious(0) benign(0.014) TCGA-D3-A5GN-06 17 40483533 40483533 G A STAT3 Missense_Mutation p.P356S 0.24 tolerated(0.05) benign(0.038) TCGA-D3-A5GN-06 17 40947896 40947896 G A WNK4 Silent p.K1092K 0.25 TCGA-D3-A5GN-06 17 40947897 40947897 G A WNK4 Missense_Mutation p.E1093K 0.24 tolerated(0.13) probably_damaging(0.937) TCGA-D3-A5GN-06 17 43908262 43908262 C T CRHR1 Silent p.I271I 0.19 TCGA-D3-A5GN-06 17 47076519 47076519 C T IGF2BP1 Missense_Mutation p.P75L 0.34 deleterious(0) benign(0.077) TCGA-D3-A5GN-06 17 47656441 47656441 G A NXPH3 Missense_Mutation p.E180K 0.25 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GN-06 17 48271757 48271757 G A COL1A1 Missense_Mutation p.P523S 0.37 unknown(0) TCGA-D3-A5GN-06 17 4883268 4883268 C T CAMTA2 Missense_Mutation p.G473E 0.39 tolerated_low_confidence(0.16) probably_damaging(1) TCGA-D3-A5GN-06 17 53392612 53392612 A T HLF Missense_Mutation p.N159I 0.50 tolerated(0.09) possibly_damaging(0.736) TCGA-D3-A5GN-06 17 56581467 56581467 G A MTMR4 Missense_Mutation p.L534F 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GN-06 17 56598703 56598703 G A SEPT4 Silent p.I357I 0.20 TCGA-D3-A5GN-06 17 58121392 58121392 G A HEATR6 Silent p.V1026V 0.20 TCGA-D3-A5GN-06 17 58147080 58147080 G A HEATR6 Missense_Mutation p.P311S 0.39 tolerated(0.31) benign(0.007) TCGA-D3-A5GN-06 17 60345065 60345065 C T TBC1D3P2 RNA 0.53 TCGA-D3-A5GN-06 17 61615955 61615955 C T KCNH6 Missense_Mutation p.S629F 0.46 deleterious(0) possibly_damaging(0.811) TCGA-D3-A5GN-06 17 61972279 61972279 G A CSH1 3'UTR 0.52 TCGA-D3-A5GN-06 17 62080927 62080927 G A C17orf72 3'Flank 0.13 TCGA-D3-A5GN-06 17 6683757 6683757 G A FBXO39 Silent p.R190R 0.36 TCGA-D3-A5GN-06 17 7010461 7010461 C T ASGR2 Missense_Mutation p.R174K 0.28 tolerated(0.65) benign(0.053) TCGA-D3-A5GN-06 17 72943535 72943535 G A OTOP3 Missense_Mutation p.E529K 0.30 deleterious(0) possibly_damaging(0.676) TCGA-D3-A5GN-06 17 74771214 74771214 C T MFSD11 Missense_Mutation p.P337L 0.35 tolerated(0.68) benign(0.003) TCGA-D3-A5GN-06 17 7530945 7530945 G A SAT2 Silent p.S3S 0.48 TCGA-D3-A5GN-06 17 7578400 7578400 G A TP53 Missense_Mutation p.P177L 0.11 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GN-06 17 7721773 7721773 G A DNAH2 Missense_Mutation p.E3511K 0.23 probably_damaging(0.986) TCGA-D3-A5GN-06 17 7793966 7793966 C A CHD3 Silent p.T156T 0.47 TCGA-D3-A5GN-06 17 78225183 78225183 C T SLC26A11 Missense_Mutation p.S571F 0.30 deleterious(0.05) benign(0.016) TCGA-D3-A5GN-06 17 78831722 78831722 C T RPTOR Intron 0.47 TCGA-D3-A5GN-06 17 79077849 79077849 C T BAIAP2 Missense_Mutation p.S336F 0.22 tolerated(0.3) possibly_damaging(0.899) TCGA-D3-A5GN-06 18 11999176 11999176 C T IMPA2 Missense_Mutation p.P74S 0.63 deleterious(0.02) benign(0.086) TCGA-D3-A5GN-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.59 TCGA-D3-A5GN-06 18 21338406 21338406 C T LAMA3 Missense_Mutation p.R332C 0.09 possibly_damaging(0.768) TCGA-D3-A5GN-06 18 28713961 28713961 G A DSC1 Missense_Mutation p.P670L 0.52 deleterious(0) benign(0.305) TCGA-D3-A5GN-06 18 28914146 28914146 G A DSG1 Missense_Mutation p.G329E 0.18 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GN-06 18 47108118 47108118 G A LIPG Intron 0.16 TCGA-D3-A5GN-06 18 51855780 51855780 G A STARD6 Missense_Mutation p.P139L 0.58 deleterious(0.01) possibly_damaging(0.89) TCGA-D3-A5GN-06 18 51855781 51855781 G A STARD6 Missense_Mutation p.P139S 0.58 tolerated(0.05) possibly_damaging(0.455) TCGA-D3-A5GN-06 18 59157865 59157865 G A CDH20 Missense_Mutation p.D27N 0.58 tolerated(0.29) benign(0.001) TCGA-D3-A5GN-06 19 11944197 11944197 G A ZNF440 3'UTR 0.39 TCGA-D3-A5GN-06 19 16024698 16024698 G A CYP4F11 Silent p.F473F 0.40 TCGA-D3-A5GN-06 19 17394236 17394236 C T ANKLE1 Silent p.F221F 0.34 TCGA-D3-A5GN-06 19 17533153 17533153 C T MVB12A Missense_Mutation p.S100F 0.39 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GN-06 19 19381091 19381091 G A TM6SF2 Intron 0.08 TCGA-D3-A5GN-06 19 19613204 19613204 C T GATAD2A Missense_Mutation p.P547L 0.10 deleterious(0.01) benign(0.029) TCGA-D3-A5GN-06 19 1980282 1980282 C T CSNK1G2 3'UTR 0.22 TCGA-D3-A5GN-06 19 22940632 22940632 C T ZNF99 Silent p.R693R 0.29 TCGA-D3-A5GN-06 19 23159466 23159466 C T ZNF728 Missense_Mutation p.E225K 0.26 tolerated(0.14) benign(0.047) TCGA-D3-A5GN-06 19 31039935 31039935 G A ZNF536 Missense_Mutation p.G1137R 0.38 tolerated_low_confidence(0.51) benign(0.136) TCGA-D3-A5GN-06 19 327884 327884 G A MIER2 Missense_Mutation p.P117S 0.28 deleterious(0.01) possibly_damaging(0.833) TCGA-D3-A5GN-06 19 33372865 33372865 C A CEP89 Nonsense_Mutation p.E674* 0.36 TCGA-D3-A5GN-06 19 35850134 35850134 C T FFAR3 Silent p.F114F 0.23 TCGA-D3-A5GN-06 19 36369813 36369813 G A APLP1 Missense_Mutation p.G558S 0.41 tolerated(0.23) probably_damaging(1) TCGA-D3-A5GN-06 19 36369836 36369836 G A APLP1 Silent p.E565E 0.20 TCGA-D3-A5GN-06 19 373472 373472 G A THEG Missense_Mutation p.P188L 0.35 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GN-06 19 38899451 38899451 C T FAM98C Missense_Mutation p.P327S 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 19 38939031 38939031 C T RYR1 Silent p.L279L 0.24 TCGA-D3-A5GN-06 19 40368658 40368658 G A FCGBP Silent p.F4230F 0.16 TCGA-D3-A5GN-06 19 43257359 43257359 G A PSG8 3'Flank 0.25 TCGA-D3-A5GN-06 19 43411146 43411146 G A PSG6 Missense_Mutation p.L390F 0.43 tolerated(0.13) probably_damaging(0.936) TCGA-D3-A5GN-06 19 43766122 43766122 C T PSG9 Missense_Mutation p.R200K 0.25 deleterious(0.04) probably_damaging(0.93) TCGA-D3-A5GN-06 19 43766249 43766249 G A PSG9 Missense_Mutation p.P158S 0.23 deleterious(0) possibly_damaging(0.74) TCGA-D3-A5GN-06 19 45206729 45206729 G A CEACAM16 Missense_Mutation p.A50T 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GN-06 19 4538455 4538455 G A LRG1 Missense_Mutation p.P181S 0.26 tolerated(0.32) benign(0.04) TCGA-D3-A5GN-06 19 51507069 51507069 G A KLK9 Missense_Mutation p.A165V 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GN-06 19 51918195 51918195 C T SIGLEC10 Missense_Mutation p.G500R 0.45 deleterious(0.01) possibly_damaging(0.874) TCGA-D3-A5GN-06 19 53208331 53208331 G A ZNF611 Silent p.F659F 0.33 TCGA-D3-A5GN-06 19 53344418 53344418 G A ZNF468 Missense_Mutation p.H377Y 0.38 deleterious(0.01) benign(0.371) TCGA-D3-A5GN-06 19 53741668 53741668 A C ZNF677 Silent p.P104P 0.32 TCGA-D3-A5GN-06 19 54257292 54257292 G A MIR527 RNA 0.04 TCGA-D3-A5GN-06 19 54778439 54778439 C T LILRB2 3'UTR 0.38 TCGA-D3-A5GN-06 19 54783386 54783386 C T LILRB2 Missense_Mutation p.E158K 0.30 deleterious(0.01) possibly_damaging(0.864) TCGA-D3-A5GN-06 19 55396759 55396759 G A FCAR Missense_Mutation p.M61I 0.34 tolerated(0.41) benign(0.093) TCGA-D3-A5GN-06 19 55992908 55992908 C T ZNF628 Silent p.G116G 0.12 TCGA-D3-A5GN-06 19 55992909 55992909 C T ZNF628 Silent p.L117L 0.12 TCGA-D3-A5GN-06 19 56321216 56321216 G A NLRP11 Missense_Mutation p.P254S 0.45 tolerated(0.44) benign(0.325) TCGA-D3-A5GN-06 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.34 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GN-06 19 56701903 56701903 C T ZSCAN5B Missense_Mutation p.A261T 0.25 tolerated(0.61) possibly_damaging(0.886) TCGA-D3-A5GN-06 19 57065806 57065806 A G ZFP28 Missense_Mutation p.H551R 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GN-06 19 57640452 57640452 A G USP29 Missense_Mutation p.I137V 0.23 tolerated(1) benign(0.001) TCGA-D3-A5GN-06 19 57642539 57642539 C T USP29 Silent p.I832I 0.16 TCGA-D3-A5GN-06 19 57642767 57642767 C T USP29 Silent p.I908I 0.32 TCGA-D3-A5GN-06 19 58266116 58266116 G T ZNF776 3'UTR 0.54 TCGA-D3-A5GN-06 19 58722937 58722937 C A ZNF274 Silent p.T287T 0.24 TCGA-D3-A5GN-06 19 58967336 58967336 G A ZNF324B Missense_Mutation p.R342H 0.15 tolerated(0.19) benign(0.007) TCGA-D3-A5GN-06 19 9014639 9014639 C T MUC16 Missense_Mutation p.S12779N 0.31 possibly_damaging(0.822) TCGA-D3-A5GN-06 19 9068007 9068007 C T MUC16 Missense_Mutation p.G6480E 0.38 unknown(0) TCGA-D3-A5GN-06 19 9070509 9070509 G A MUC16 Missense_Mutation p.S5646F 0.22 unknown(0) TCGA-D3-A5GN-06 19 9074848 9074848 G A MUC16 Silent p.L4200L 0.33 TCGA-D3-A5GN-06 19 9074858 9074858 C T MUC16 Silent p.E4196E 0.35 TCGA-D3-A5GN-06 19 9077349 9077349 G A MUC16 Missense_Mutation p.S3366F 0.26 unknown(0) TCGA-D3-A5GN-06 19 9090186 9090186 C T MUC16 Missense_Mutation p.M543I 0.27 unknown(0) TCGA-D3-A5GN-06 19 9204844 9204844 G A OR1M1 Silent p.K308K 0.20 TCGA-D3-A5GN-06 19 9801109 9801109 C T ZNF812 Missense_Mutation p.G357E 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GN-06 1 113238118 113238118 C T MOV10 Silent p.L567L 0.19 TCGA-D3-A5GN-06 1 113238119 113238119 C T MOV10 Missense_Mutation p.R568W 0.20 tolerated(0.06) possibly_damaging(0.871) TCGA-D3-A5GN-06 1 114680609 114680609 C T SYT6 Silent p.E108E 0.18 TCGA-D3-A5GN-06 1 115828696 115828696 C T NGF Missense_Mutation p.A241T 0.49 deleterious_low_confidence(0.02) benign(0.287) TCGA-D3-A5GN-06 1 117303092 117303092 G A CD2 Missense_Mutation p.G151R 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 1 11985529 11985529 T A KIAA2013 Missense_Mutation p.T256S 0.48 tolerated(0.87) benign(0.002) TCGA-D3-A5GN-06 1 120263838 120263838 G A PHGDH Missense_Mutation p.D62N 0.20 deleterious(0) possibly_damaging(0.734) TCGA-D3-A5GN-06 1 150528791 150528791 G A ADAMTSL4 Missense_Mutation p.G509R 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 1 152382192 152382192 C T CRNN Missense_Mutation p.D456N 0.67 tolerated(0.12) benign(0.097) TCGA-D3-A5GN-06 1 152538467 152538467 C T LCE3E Missense_Mutation p.R73K 0.12 tolerated_low_confidence(0.49) unknown(0) TCGA-D3-A5GN-06 1 153177316 153177316 G A LELP1 Missense_Mutation p.E45K 0.61 deleterious_low_confidence(0.01) benign(0.192) TCGA-D3-A5GN-06 1 153665857 153665857 C T NPR1 Silent p.L1051L 0.59 TCGA-D3-A5GN-06 1 154112301 154112301 G A NUP210L Nonsense_Mutation p.R232* 0.13 TCGA-D3-A5GN-06 1 155188246 155188246 C T MTX1 3'Flank 0.18 TCGA-D3-A5GN-06 1 155188247 155188247 C T MTX1 3'Flank 0.18 TCGA-D3-A5GN-06 1 155210959 155210959 G A GBA 5'UTR 0.11 TCGA-D3-A5GN-06 1 157556184 157556184 C T FCRL4 Silent p.G303G 0.19 TCGA-D3-A5GN-06 1 15792603 15792603 C T CELA2A Silent p.I201I 0.37 TCGA-D3-A5GN-06 1 158736437 158736437 G A OR6N1 Silent p.F12F 0.13 TCGA-D3-A5GN-06 1 160278903 160278903 G T COPA Missense_Mutation p.Q403K 0.10 tolerated(0.77) benign(0.012) TCGA-D3-A5GN-06 1 16259588 16259588 C T SPEN Missense_Mutation p.P2285S 0.40 benign(0.004) TCGA-D3-A5GN-06 1 17409101 17409101 G A PADI2 Missense_Mutation p.P366L 0.31 deleterious(0) probably_damaging(0.982) TCGA-D3-A5GN-06 1 17597610 17597610 G A PADI3 Silent p.R328R 0.42 TCGA-D3-A5GN-06 1 176563733 176563733 G A PAPPA2 Silent p.K331K 0.26 TCGA-D3-A5GN-06 1 177905472 177905472 G A SEC16B Silent p.S844S 0.14 TCGA-D3-A5GN-06 1 182615997 182615997 G A RGS8 Missense_Mutation p.S157F 0.15 deleterious(0) benign(0.289) TCGA-D3-A5GN-06 1 183253106 183253106 C T NMNAT2 Intron 0.62 TCGA-D3-A5GN-06 1 186647512 186647512 G A PTGS2 Missense_Mutation p.P113L 0.54 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A5GN-06 1 196682902 196682902 G A CFH Silent p.G458G 0.10 TCGA-D3-A5GN-06 1 196927145 196927145 G A CFHR2 Silent p.E185E 0.58 TCGA-D3-A5GN-06 1 201031193 201031193 C T CACNA1S Missense_Mutation p.G978R 0.51 deleterious(0.01) benign(0.316) TCGA-D3-A5GN-06 1 204587926 204587926 C T LRRN2 Missense_Mutation p.E399K 0.66 tolerated(0.12) benign(0.309) TCGA-D3-A5GN-06 1 207890896 207890896 C T CR1L Missense_Mutation p.S501F 0.17 deleterious(0.01) possibly_damaging(0.702) TCGA-D3-A5GN-06 1 208061033 208061033 G A CD34 3'UTR 0.57 TCGA-D3-A5GN-06 1 21887684 21887684 C T ALPL Silent p.F92F 0.25 TCGA-D3-A5GN-06 1 22304895 22304895 C T CELA3B Missense_Mutation p.S26F 0.36 deleterious(0.05) benign(0.002) TCGA-D3-A5GN-06 1 223284364 223284364 A G TLR5 Silent p.C670C 0.17 TCGA-D3-A5GN-06 1 235490237 235490237 T G ARID4B 5'UTR 0.64 TCGA-D3-A5GN-06 1 238048610 238048610 G A ZP4 Missense_Mutation p.P389L 0.09 deleterious(0) possibly_damaging(0.905) TCGA-D3-A5GN-06 1 247712498 247712498 G A GCSAML Missense_Mutation p.G2E 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A5GN-06 1 247751946 247751946 C T OR2G2 Silent p.I95I 0.13 TCGA-D3-A5GN-06 1 248112665 248112665 G A OR2L8 Missense_Mutation p.R169Q 0.53 tolerated(0.51) benign(0.03) TCGA-D3-A5GN-06 1 248202232 248202232 C T OR2L2 Silent p.L221L 0.12 TCGA-D3-A5GN-06 1 248343714 248343714 C T OR2M2 Missense_Mutation p.L143F 0.63 tolerated(0.23) benign(0.33) TCGA-D3-A5GN-06 1 248343937 248343937 C T OR2M2 Missense_Mutation p.S217F 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GN-06 1 248458237 248458237 G A OR2T12 Missense_Mutation p.S215F 0.57 deleterious(0) probably_damaging(0.964) TCGA-D3-A5GN-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.46 TCGA-D3-A5GN-06 1 248756631 248756631 C T OR2T10 Missense_Mutation p.G147S 0.59 tolerated(0.36) benign(0.137) TCGA-D3-A5GN-06 1 27648659 27648659 C T TMEM222 5'UTR 0.44 TCGA-D3-A5GN-06 1 31769575 31769575 C T SNRNP40 Silent p.K8K 0.47 TCGA-D3-A5GN-06 1 32221722 32221722 G A BAI2 Missense_Mutation p.P239L 0.40 tolerated(0.82) benign(0) TCGA-D3-A5GN-06 1 3319465 3319465 G A PRDM16 Missense_Mutation p.G263S 0.41 tolerated(0.8) benign(0.004) TCGA-D3-A5GN-06 1 34189815 34189815 C T CSMD2 Missense_Mutation p.E955K 0.22 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GN-06 1 47048920 47048920 G A MKNK1 Missense_Mutation p.S39F 0.17 deleterious(0) benign(0.066) TCGA-D3-A5GN-06 1 47765657 47765657 G A STIL Silent p.I207I 0.23 TCGA-D3-A5GN-06 1 52850901 52850901 G A ORC1 Silent p.P505P 0.16 TCGA-D3-A5GN-06 1 6204140 6204140 G A CHD5 Silent p.I626I 0.46 TCGA-D3-A5GN-06 1 62235071 62235071 C T INADL Silent p.V167V 0.38 TCGA-D3-A5GN-06 1 66070837 66070837 C T LEPR Missense_Mutation p.S507F 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A5GN-06 1 66074565 66074565 G A LEPR Missense_Mutation p.G578E 0.21 tolerated(0.08) benign(0.367) TCGA-D3-A5GN-06 1 6631189 6631189 C T TAS1R1 Missense_Mutation p.P138S 0.37 tolerated(0.13) benign(0.173) TCGA-D3-A5GN-06 1 75038181 75038181 C T C1orf173 Silent p.R1071R 0.44 TCGA-D3-A5GN-06 1 77987611 77987611 G A AK5 Missense_Mutation p.E471K 0.41 tolerated(0.22) benign(0.006) TCGA-D3-A5GN-06 1 84412889 84412889 G A TTLL7 Nonsense_Mutation p.Q142* 0.10 TCGA-D3-A5GN-06 1 89478911 89478911 G A GBP3 Silent p.S275S 0.19 TCGA-D3-A5GN-06 1 95363557 95363557 G A CNN3 Missense_Mutation p.S244F 0.39 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GN-06 1 97771850 97771850 G A DPYD Missense_Mutation p.P688S 0.19 deleterious(0.01) possibly_damaging(0.617) TCGA-D3-A5GN-06 20 11903989 11903989 C T BTBD3 Missense_Mutation p.S415F 0.13 deleterious(0.01) possibly_damaging(0.733) TCGA-D3-A5GN-06 20 16485145 16485145 G A KIF16B Missense_Mutation p.R350C 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 20 19634765 19634765 G A SLC24A3 Silent p.V224V 0.27 TCGA-D3-A5GN-06 20 23066296 23066296 G A CD93 Silent p.F178F 0.49 TCGA-D3-A5GN-06 20 2592967 2592967 G T TMC2 Missense_Mutation p.W575L 0.08 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GN-06 20 30432168 30432168 C T FOXS1 3'UTR 0.38 TCGA-D3-A5GN-06 20 31023388 31023388 C T ASXL1 Missense_Mutation p.S958L 0.58 tolerated_low_confidence(0.25) benign(0.004) TCGA-D3-A5GN-06 20 31805443 31805443 G A BPIFA3 Missense_Mutation p.R34K 0.24 tolerated(0.91) benign(0.002) TCGA-D3-A5GN-06 20 33338182 33338182 G A NCOA6 Missense_Mutation p.L606F 0.09 possibly_damaging(0.478) TCGA-D3-A5GN-06 20 33764077 33764077 C T PROCR Silent p.F143F 0.22 TCGA-D3-A5GN-06 20 3678689 3678689 C T SIGLEC1 Silent p.V626V 0.22 TCGA-D3-A5GN-06 20 44690918 44690918 G A NCOA5 3'UTR 0.43 TCGA-D3-A5GN-06 20 44691282 44691282 G A NCOA5 Missense_Mutation p.S466F 0.10 deleterious(0.01) possibly_damaging(0.804) TCGA-D3-A5GN-06 20 45217804 45217804 G A SLC13A3 Silent p.P337P 0.24 TCGA-D3-A5GN-06 20 48699376 48699376 G A UBE2V1 Missense_Mutation p.R148W 0.16 deleterious(0.04) benign(0.374) TCGA-D3-A5GN-06 20 50769860 50769860 A G ZFP64 Missense_Mutation p.F291L 0.56 tolerated(0.14) probably_damaging(0.991) TCGA-D3-A5GN-06 20 57610060 57610060 G A SLMO2 3'UTR 0.52 TCGA-D3-A5GN-06 20 5903151 5903151 G A CHGB Missense_Mutation p.E121K 0.54 deleterious(0.03) possibly_damaging(0.589) TCGA-D3-A5GN-06 20 5904058 5904058 G A CHGB Missense_Mutation p.G423E 0.29 tolerated(0.2) benign(0.393) TCGA-D3-A5GN-06 20 6065781 6065781 C T FERMT1 Missense_Mutation p.E509K 0.37 tolerated(0.64) benign(0.311) TCGA-D3-A5GN-06 20 60775992 60775992 G A MTG2 Silent p.R360R 0.57 TCGA-D3-A5GN-06 20 61511156 61511156 G A DIDO1 Missense_Mutation p.S2051F 0.54 possibly_damaging(0.453) TCGA-D3-A5GN-06 21 10973727 10973727 C T TPTE Missense_Mutation p.E3K 0.14 tolerated_low_confidence(0.2) benign(0) TCGA-D3-A5GN-06 21 32253300 32253300 G A KRTAP11-1 3'UTR 0.22 TCGA-D3-A5GN-06 21 33684379 33684379 T C MRAP 3'UTR 0.36 TCGA-D3-A5GN-06 21 41137656 41137656 G A IGSF5 Missense_Mutation p.D99N 0.29 tolerated(0.38) benign(0.204) TCGA-D3-A5GN-06 21 45739290 45739290 C T PFKL Silent p.L373L 0.07 TCGA-D3-A5GN-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.20 TCGA-D3-A5GN-06 22 17072151 17072151 C A CCT8L2 Missense_Mutation p.L430F 0.18 tolerated(0.08) benign(0.435) TCGA-D3-A5GN-06 22 18305764 18305764 C A MICAL3 Nonsense_Mutation p.E1086* 0.09 TCGA-D3-A5GN-06 22 19707891 19707891 C T SEPT5 Silent p.F137F 0.47 TCGA-D3-A5GN-06 22 19753283 19753283 C T TBX1 Silent p.I281I 0.53 TCGA-D3-A5GN-06 22 20796595 20796595 C T KLHL22 Missense_Mutation p.G557D 0.23 tolerated(0.45) probably_damaging(0.997) TCGA-D3-A5GN-06 22 22324726 22324726 G A TOP3B Missense_Mutation p.T146I 0.50 tolerated(0.19) benign(0.015) TCGA-D3-A5GN-06 22 22712403 22712403 G A IGLV1-47 Missense_Mutation p.G49E 0.54 tolerated_low_confidence(0.17) benign(0.271) TCGA-D3-A5GN-06 22 30681833 30681833 G A GATSL3 Silent p.F303F 0.54 TCGA-D3-A5GN-06 22 32014353 32014353 C T SFI1 Silent p.P1226P 0.25 TCGA-D3-A5GN-06 22 35719109 35719109 C T TOM1 Missense_Mutation p.T102I 0.61 tolerated(1) benign(0.199) TCGA-D3-A5GN-06 22 37770712 37770712 G A ELFN2 Missense_Mutation p.S288L 0.21 deleterious(0.04) benign(0.005) TCGA-D3-A5GN-06 22 38039157 38039157 C T SH3BP1 Missense_Mutation p.S150F 0.11 tolerated(0.08) probably_damaging(0.937) TCGA-D3-A5GN-06 22 40055069 40055069 G A CACNA1I Missense_Mutation p.D760N 0.07 deleterious(0) possibly_damaging(0.822) TCGA-D3-A5GN-06 22 41545984 41545984 C T EP300 Missense_Mutation p.P867S 0.16 unknown(0) TCGA-D3-A5GN-06 22 46136371 46136371 C T ATXN10 Missense_Mutation p.R376C 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 2 102998082 102998082 C T IL18R1 Missense_Mutation p.R210C 0.20 tolerated(0.06) benign(0.306) TCGA-D3-A5GN-06 2 103124627 103124627 C T SLC9A4 Nonsense_Mutation p.R430* 0.21 TCGA-D3-A5GN-06 2 108488439 108488439 G A RGPD4 Missense_Mutation p.E1327K 0.40 deleterious(0.03) benign(0.298) TCGA-D3-A5GN-06 2 109545722 109545722 G A EDAR Silent p.F96F 0.22 TCGA-D3-A5GN-06 2 112786338 112786338 G A MERTK Missense_Mutation p.G966E 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.662) TCGA-D3-A5GN-06 2 113346552 113346552 C T CHCHD5 3'UTR 0.21 TCGA-D3-A5GN-06 2 133541612 133541612 C T NCKAP5 Silent p.V924V 0.25 TCGA-D3-A5GN-06 2 133547743 133547743 G A NCKAP5 Silent p.C315C 0.30 TCGA-D3-A5GN-06 2 136570323 136570323 C T LCT Silent p.V637V 0.23 TCGA-D3-A5GN-06 2 141122267 141122267 G C LRP1B Missense_Mutation p.D3698E 0.05 possibly_damaging(0.739) TCGA-D3-A5GN-06 2 141812795 141812795 C T LRP1B Missense_Mutation p.G481E 0.37 probably_damaging(0.931) TCGA-D3-A5GN-06 2 141812796 141812796 C T LRP1B Missense_Mutation p.G481R 0.37 probably_damaging(0.953) TCGA-D3-A5GN-06 2 155295197 155295197 C T GALNT13 Missense_Mutation p.H497Y 0.33 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A5GN-06 2 161029125 161029125 G A ITGB6 Silent p.L292L 0.09 TCGA-D3-A5GN-06 2 163051225 163051225 C T FAP Missense_Mutation p.G479E 0.37 deleterious(0.03) possibly_damaging(0.902) TCGA-D3-A5GN-06 2 166003504 166003504 G A SCN3A Silent p.F472F 0.45 TCGA-D3-A5GN-06 2 166786250 166786250 G A TTC21B Silent p.I365I 0.41 TCGA-D3-A5GN-06 2 168101472 168101472 G A XIRP2 Missense_Mutation p.M1190I 0.45 benign(0.008) TCGA-D3-A5GN-06 2 175742627 175742627 G A CHN1 Silent p.L164L 0.31 TCGA-D3-A5GN-06 2 179407408 179407408 G A TTN Silent p.T32391T 0.37 TCGA-D3-A5GN-06 2 179427525 179427525 C T TTN Silent p.V27778V 0.48 TCGA-D3-A5GN-06 2 179516620 179516620 G A TTN Missense_Mutation p.P13124S 0.33 TCGA-D3-A5GN-06 2 179552868 179552868 C T TTN Missense_Mutation p.E10761K 0.22 TCGA-D3-A5GN-06 2 179604237 179604237 C T TTN Missense_Mutation p.E4575K 0.22 TCGA-D3-A5GN-06 2 179615543 179615543 C T TTN Intron 0.62 TCGA-D3-A5GN-06 2 179637853 179637853 C T TTN Missense_Mutation p.G2613E 0.31 TCGA-D3-A5GN-06 2 182766492 182766492 G A SSFA2 Splice_Site p.X238_splice 0.08 TCGA-D3-A5GN-06 2 189859478 189859478 G A COL3A1 Missense_Mutation p.G459E 0.44 unknown(0) TCGA-D3-A5GN-06 2 191941042 191941042 G A STAT4 Missense_Mutation p.H95Y 0.48 tolerated(0.06) possibly_damaging(0.703) TCGA-D3-A5GN-06 2 201798673 201798673 C T ORC2 Missense_Mutation p.E245K 0.20 deleterious(0.01) possibly_damaging(0.613) TCGA-D3-A5GN-06 2 202245710 202245710 G A TRAK2 Silent p.L767L 0.41 TCGA-D3-A5GN-06 2 202492842 202492842 G A TMEM237 Silent p.I300I 0.29 TCGA-D3-A5GN-06 2 215802250 215802250 G A ABCA12 Missense_Mutation p.P2509L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 2 219875560 219875560 C T CCDC108 Nonsense_Mutation p.W1372* 0.43 TCGA-D3-A5GN-06 2 220309595 220309595 C T SPEG Missense_Mutation p.S176F 0.20 possibly_damaging(0.701) TCGA-D3-A5GN-06 2 242690671 242690671 T A D2HGDH Missense_Mutation p.F336L 0.17 deleterious(0.01) possibly_damaging(0.722) TCGA-D3-A5GN-06 2 242755721 242755721 G A NEU4 Missense_Mutation p.E27K 0.31 tolerated(0.06) benign(0.024) TCGA-D3-A5GN-06 2 25016004 25016004 C T PTRHD1 Silent p.V81V 0.35 TCGA-D3-A5GN-06 2 31562485 31562485 G A XDH Missense_Mutation p.S1215F 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 2 64779312 64779312 C T AFTPH Missense_Mutation p.A235V 0.27 deleterious(0) possibly_damaging(0.856) TCGA-D3-A5GN-06 2 64779313 64779313 C T AFTPH Silent p.A235A 0.26 TCGA-D3-A5GN-06 2 73800220 73800220 C T ALMS1 Missense_Mutation p.P3738L 0.42 possibly_damaging(0.793) TCGA-D3-A5GN-06 2 79384407 79384407 C T REG3A Nonsense_Mutation p.W158* 0.25 TCGA-D3-A5GN-06 2 84517853 84517853 G A FUNDC2P2 RNA 0.50 TCGA-D3-A5GN-06 2 99013544 99013544 G A CNGA3 Silent p.L637L 0.19 TCGA-D3-A5GN-06 3 10971013 10971013 G A SLC6A11 Silent p.V453V 0.11 TCGA-D3-A5GN-06 3 112969738 112969738 C T BOC Intron 0.24 TCGA-D3-A5GN-06 3 120764282 120764282 G A STXBP5L Missense_Mutation p.G124S 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 3 121712283 121712283 G A ILDR1 Missense_Mutation p.P438L 0.14 tolerated(0.37) benign(0.002) TCGA-D3-A5GN-06 3 121994742 121994742 G A CASR Silent p.G487G 0.59 TCGA-D3-A5GN-06 3 124393214 124393214 G A KALRN Missense_Mutation p.D656N 0.49 tolerated(0.12) possibly_damaging(0.619) TCGA-D3-A5GN-06 3 124810371 124810371 C T SLC12A8 Silent p.V611V 0.07 TCGA-D3-A5GN-06 3 129290539 129290539 G A PLXND1 Missense_Mutation p.P1076S 0.56 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GN-06 3 12950814 12950814 G A IQSEC1 Missense_Mutation p.S860F 0.15 tolerated(0.06) probably_damaging(0.939) TCGA-D3-A5GN-06 3 131418768 131418768 C T CPNE4 Silent p.G139G 0.46 TCGA-D3-A5GN-06 3 133474253 133474253 G A TF Silent p.G183G 0.55 TCGA-D3-A5GN-06 3 133494362 133494362 G A TF Silent p.E591E 0.10 TCGA-D3-A5GN-06 3 138417858 138417858 T C PIK3CB Missense_Mutation p.E554G 0.36 deleterious(0) probably_damaging(0.988) TCGA-D3-A5GN-06 3 13860507 13860507 G A WNT7A Silent p.F328F 0.06 TCGA-D3-A5GN-06 3 147114146 147114146 C T ZIC4 Missense_Mutation p.G111R 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A5GN-06 3 151012942 151012942 C T GPR87 Missense_Mutation p.G31E 0.12 tolerated(0.95) benign(0.001) TCGA-D3-A5GN-06 3 157188163 157188163 C T VEPH1 Silent p.G98G 0.64 TCGA-D3-A5GN-06 3 172480255 172480255 C T ECT2 Missense_Mutation p.P270S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 3 172607205 172607205 G A SPATA16 3'UTR 0.23 TCGA-D3-A5GN-06 3 180372594 180372594 C T CCDC39 Missense_Mutation p.A296T 0.38 deleterious(0) benign(0.016) TCGA-D3-A5GN-06 3 183397024 183397024 C T KLHL24 Missense_Mutation p.H585Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 3 183474319 183474319 C T YEATS2 Missense_Mutation p.S465F 0.56 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A5GN-06 3 183756374 183756374 G A HTR3D Missense_Mutation p.G366E 0.23 tolerated(0.58) benign(0.163) TCGA-D3-A5GN-06 3 193031915 193031915 C T ATP13A5 Silent p.V742V 0.57 TCGA-D3-A5GN-06 3 194790405 194790405 C T XXYLT1 3'UTR 0.10 TCGA-D3-A5GN-06 3 19924175 19924175 G A EFHB Missense_Mutation p.P732L 0.61 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 3 3081708 3081708 C T CNTN4 Intron 0.08 TCGA-D3-A5GN-06 3 36872992 36872992 C T TRANK1 Missense_Mutation p.M2650I 0.26 tolerated_low_confidence(0.17) benign(0.005) TCGA-D3-A5GN-06 3 38743382 38743382 G A SCN10A Silent p.F1535F 0.49 TCGA-D3-A5GN-06 3 40464578 40464578 G A ENTPD3 Missense_Mutation p.G357R 0.57 deleterious(0.02) possibly_damaging(0.529) TCGA-D3-A5GN-06 3 43618376 43618376 G A ANO10 Missense_Mutation p.L324F 0.10 tolerated(0.08) benign(0.042) TCGA-D3-A5GN-06 3 44762800 44762800 T G ZNF502 Missense_Mutation p.F164C 0.10 deleterious(0) possibly_damaging(0.637) TCGA-D3-A5GN-06 3 47045637 47045637 C T NBEAL2 Silent p.R1984R 0.56 TCGA-D3-A5GN-06 3 48456644 48456644 T A PLXNB1 Missense_Mutation p.R1303W 0.11 tolerated(0.16) probably_damaging(0.965) TCGA-D3-A5GN-06 3 48663346 48663346 G A SLC26A6 3'UTR 0.09 TCGA-D3-A5GN-06 3 51747199 51747199 C T GRM2 Silent p.A387A 0.50 TCGA-D3-A5GN-06 3 53785796 53785796 C T CACNA1D Silent p.A1199A 0.22 TCGA-D3-A5GN-06 3 56207499 56207499 G A ERC2 Missense_Mutation p.A375V 0.18 deleterious(0.02) benign(0.216) TCGA-D3-A5GN-06 3 66430760 66430760 G A LRIG1 Missense_Mutation p.P1070L 0.13 tolerated_low_confidence(0.06) benign(0.118) TCGA-D3-A5GN-06 3 77147264 77147264 C G ROBO2 Missense_Mutation p.A70G 0.16 deleterious(0) unknown(0) TCGA-D3-A5GN-06 3 79639029 79639029 C T ROBO1 Missense_Mutation p.M11I 0.52 tolerated_low_confidence(1) benign(0) TCGA-D3-A5GN-06 4 100257910 100257910 C T ADH1C Silent p.%3D 0.45 TCGA-D3-A5GN-06 4 103988684 103988684 A T SLC9B2 Silent p.I8I 0.47 TCGA-D3-A5GN-06 4 108866315 108866315 C T CYP2U1 Missense_Mutation p.A227V 0.15 deleterious(0) possibly_damaging(0.531) TCGA-D3-A5GN-06 4 113353089 113353089 G A ALPK1 Missense_Mutation p.E796K 0.16 tolerated(0.1) benign(0.007) TCGA-D3-A5GN-06 4 114278424 114278424 G A ANK2 Missense_Mutation p.E2884K 0.03 benign(0.209) TCGA-D3-A5GN-06 4 114823339 114823339 G A ARSJ 3'UTR 0.66 TCGA-D3-A5GN-06 4 114824085 114824085 G A ARSJ Missense_Mutation p.P382L 0.13 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GN-06 4 123260486 123260486 C T KIAA1109 Missense_Mutation p.P4092L 0.14 benign(0.024) TCGA-D3-A5GN-06 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.38 TCGA-D3-A5GN-06 4 138442627 138442627 C T PCDH18 Silent p.K988K 0.09 TCGA-D3-A5GN-06 4 145040890 145040890 C T GYPA Missense_Mutation p.E61K 0.52 tolerated(0.58) benign(0.28) TCGA-D3-A5GN-06 4 156135423 156135423 C T NPY2R Missense_Mutation p.T111I 0.15 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GN-06 4 164394337 164394337 C T TKTL2 Missense_Mutation p.D184N 0.12 deleterious(0) probably_damaging(0.972) TCGA-D3-A5GN-06 4 164506934 164506934 G A MARCH1 Silent p.F130F 0.08 TCGA-D3-A5GN-06 4 1656958 1656958 G A FAM53A Missense_Mutation p.S210F 0.23 deleterious(0.04) probably_damaging(0.967) TCGA-D3-A5GN-06 4 177100651 177100651 C T WDR17 Missense_Mutation p.S1297F 0.47 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GN-06 4 20728952 20728952 C T PACRGL Silent p.S245S 0.12 TCGA-D3-A5GN-06 4 25674775 25674775 C T SLC34A2 Missense_Mutation p.S372F 0.10 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GN-06 4 38119752 38119752 C T TBC1D1 Silent p.A967A 0.22 TCGA-D3-A5GN-06 4 40045584 40045584 G A RP11-333E13.4 RNA 0.61 TCGA-D3-A5GN-06 4 40045585 40045585 G A RP11-333E13.4 RNA 0.61 TCGA-D3-A5GN-06 4 41691554 41691554 G A LIMCH1 Missense_Mutation p.G1009R 0.74 deleterious(0) possibly_damaging(0.847) TCGA-D3-A5GN-06 4 46099262 46099262 G A GABRG1 Missense_Mutation p.S70L 0.13 tolerated(0.06) possibly_damaging(0.649) TCGA-D3-A5GN-06 4 47538834 47538834 C T ATP10D Silent p.I425I 0.19 TCGA-D3-A5GN-06 4 48490895 48490895 C T SLC10A4 Missense_Mutation p.S418F 0.49 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GN-06 4 55961115 55961115 C T KDR Missense_Mutation p.G942E 0.15 deleterious(0.02) benign(0.297) TCGA-D3-A5GN-06 4 55962486 55962486 G A KDR Nonsense_Mutation p.R880* 0.62 TCGA-D3-A5GN-06 4 6580149 6580149 G A MAN2B2 Silent p.L105L 0.68 TCGA-D3-A5GN-06 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.12 TCGA-D3-A5GN-06 4 69962701 69962701 C T UGT2B7 Missense_Mutation p.P155S 0.54 deleterious(0.04) possibly_damaging(0.477) TCGA-D3-A5GN-06 4 70355166 70355166 G A UGT2B4 Silent p.I331I 0.22 TCGA-D3-A5GN-06 4 71114747 71114747 G A CSN3 Silent p.Q40Q 0.19 TCGA-D3-A5GN-06 4 71114944 71114944 C T CSN3 Missense_Mutation p.T106I 0.63 tolerated(0.06) possibly_damaging(0.803) TCGA-D3-A5GN-06 4 74441896 74441896 C T RASSF6 3'UTR 0.69 TCGA-D3-A5GN-06 4 77700274 77700274 C T SHROOM3 Missense_Mutation p.P1979S 0.10 deleterious_low_confidence(0.04) benign(0.23) TCGA-D3-A5GN-06 4 78532168 78532168 C T CXCL13 Missense_Mutation p.P102L 0.41 deleterious(0) probably_damaging(0.946) TCGA-D3-A5GN-06 4 86916059 86916059 C T ARHGAP24 Missense_Mutation p.L418F 0.33 deleterious(0.04) probably_damaging(0.961) TCGA-D3-A5GN-06 4 9784955 9784955 C T DRD5 Silent p.F434F 0.09 TCGA-D3-A5GN-06 5 114469560 114469560 G A TRIM36 Missense_Mutation p.P511S 0.12 deleterious(0.04) benign(0.043) TCGA-D3-A5GN-06 5 127730894 127730894 C T FBN2 Silent p.T384T 0.47 TCGA-D3-A5GN-06 5 132556461 132556461 C T FSTL4 Silent p.T479T 0.41 TCGA-D3-A5GN-06 5 134154611 134154611 C T DDX46 Missense_Mutation p.A964V 0.41 tolerated(0.26) possibly_damaging(0.742) TCGA-D3-A5GN-06 5 134154612 134154612 C T DDX46 Silent p.A964A 0.41 TCGA-D3-A5GN-06 5 137485337 137485337 G A BRD8 Silent p.S1090S 0.42 TCGA-D3-A5GN-06 5 137485338 137485338 G A BRD8 Missense_Mutation p.S1090F 0.42 deleterious(0) benign(0.326) TCGA-D3-A5GN-06 5 13850769 13850769 G A DNAH5 Silent p.S1702S 0.22 TCGA-D3-A5GN-06 5 140166145 140166145 C T PCDHA1 Silent p.I90I 0.21 TCGA-D3-A5GN-06 5 140183220 140183220 C T PCDHA3 Intron 0.24 TCGA-D3-A5GN-06 5 140214184 140214184 G A PCDHA7 Silent p.G72G 0.42 TCGA-D3-A5GN-06 5 140307693 140307693 G A PCDHAC1 Missense_Mutation p.E406K 0.16 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GN-06 5 140476315 140476315 G A PCDHB2 Silent p.K647K 0.20 TCGA-D3-A5GN-06 5 140503257 140503257 C T PCDHB4 Silent p.F559F 0.40 TCGA-D3-A5GN-06 5 140573519 140573519 G A PCDHB10 Missense_Mutation p.S465N 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.854) TCGA-D3-A5GN-06 5 140729878 140729878 C T PCDHGB1 Silent p.P17P 0.19 TCGA-D3-A5GN-06 5 141694699 141694699 G A SPRY4 Missense_Mutation p.S15F 0.31 tolerated_low_confidence(0.76) benign(0.025) TCGA-D3-A5GN-06 5 149003640 149003640 G A ARHGEF37 Silent p.T467T 0.38 TCGA-D3-A5GN-06 5 149357213 149357213 G A SLC26A2 5'UTR 0.19 TCGA-D3-A5GN-06 5 149583589 149583589 C T SLC6A7 Silent p.I440I 0.39 TCGA-D3-A5GN-06 5 159344483 159344483 G A ADRA1B Missense_Mutation p.D191N 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A5GN-06 5 159821898 159821898 G C C5orf54 Missense_Mutation p.I200M 0.06 tolerated(0.2) probably_damaging(0.999) TCGA-D3-A5GN-06 5 175992687 175992687 G A CDHR2 Missense_Mutation p.A23T 0.30 deleterious(0.02) benign(0.379) TCGA-D3-A5GN-06 5 19483591 19483591 G T CDH18 Silent p.P567P 0.18 TCGA-D3-A5GN-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.07 deleterious(0) possibly_damaging(0.482) TCGA-D3-A5GN-06 5 32074047 32074047 C T PDZD2 Silent p.L945L 0.32 TCGA-D3-A5GN-06 5 35800230 35800230 C T SPEF2 Missense_Mutation p.S1664F 0.52 tolerated(0.72) benign(0.047) TCGA-D3-A5GN-06 5 41161920 41161920 G A C6 Nonsense_Mutation p.R445* 0.09 TCGA-D3-A5GN-06 5 42808403 42808403 C T SEPP1 Missense_Mutation p.G18E 0.75 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GN-06 5 61648531 61648531 C T KIF2A Missense_Mutation p.P151S 0.29 tolerated(0.63) benign(0.047) TCGA-D3-A5GN-06 5 66259558 66259558 C T MAST4 Intron 0.13 TCGA-D3-A5GN-06 5 70900256 70900256 C T MCCC2 Silent p.F195F 0.39 TCGA-D3-A5GN-06 5 75964575 75964575 A C IQGAP2 Missense_Mutation p.T917P 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GN-06 5 78940988 78940988 C T PAPD4 Missense_Mutation p.P265L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 5 79025306 79025306 A T CMYA5 Missense_Mutation p.I240F 0.23 possibly_damaging(0.507) TCGA-D3-A5GN-06 5 79034487 79034487 G A CMYA5 Missense_Mutation p.G3300D 0.21 benign(0.04) TCGA-D3-A5GN-06 5 81601167 81601167 C T ATP6AP1L 5'UTR 0.26 TCGA-D3-A5GN-06 5 89943434 89943434 A G GPR98 Missense_Mutation p.R1048G 0.45 benign(0) TCGA-D3-A5GN-06 5 95757660 95757660 C T PCSK1 Missense_Mutation p.D182N 0.42 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GN-06 6 100841659 100841659 C T SIM1 Missense_Mutation p.R425K 0.15 tolerated(0.56) benign(0.182) TCGA-D3-A5GN-06 6 101847169 101847169 C T GRIK2 Missense_Mutation p.P6S 0.45 deleterious_low_confidence(0) benign(0) TCGA-D3-A5GN-06 6 10894130 10894130 G A SYCP2L Missense_Mutation p.D37N 0.29 tolerated(0.09) benign(0.033) TCGA-D3-A5GN-06 6 109480270 109480270 T A CEP57L1 Missense_Mutation p.S263T 0.46 tolerated(0.4) benign(0.342) TCGA-D3-A5GN-06 6 110300902 110300902 C T GPR6 Missense_Mutation p.S196F 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GN-06 6 117114214 117114214 C T GPRC6A Silent p.V624V 0.35 TCGA-D3-A5GN-06 6 117683900 117683900 C T ROS1 Missense_Mutation p.E1083K 0.25 tolerated(0.78) benign(0.012) TCGA-D3-A5GN-06 6 128294260 128294260 G A PTPRK Silent p.I1398I 0.35 TCGA-D3-A5GN-06 6 129470195 129470195 G A LAMA2 Silent p.Q327Q 0.35 TCGA-D3-A5GN-06 6 133844271 133844271 G A EYA4 Missense_Mutation p.G565E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 6 158502225 158502225 C T SYNJ2 Silent p.F884F 0.39 TCGA-D3-A5GN-06 6 159457437 159457437 G A TAGAP Missense_Mutation p.P540S 0.46 tolerated(0.05) benign(0.003) TCGA-D3-A5GN-06 6 16328252 16328252 G A ATXN1 Missense_Mutation p.P97L 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A5GN-06 6 167343184 167343184 G A RNASET2 Silent p.S221S 0.41 TCGA-D3-A5GN-06 6 17292009 17292009 C T RBM24 Missense_Mutation p.P124S 0.50 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A5GN-06 6 17669558 17669558 C T NUP153 Missense_Mutation p.R327K 0.38 deleterious(0.04) possibly_damaging(0.823) TCGA-D3-A5GN-06 6 24358078 24358078 G A KAAG1 Missense_Mutation p.E71K 0.26 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-D3-A5GN-06 6 25923937 25923937 C T SLC17A2 Missense_Mutation p.E76K 0.52 tolerated(0.21) benign(0.005) TCGA-D3-A5GN-06 6 29364696 29364696 G A OR12D2 Missense_Mutation p.V74M 0.46 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A5GN-06 6 31901648 31901648 C T C2 Silent p.P207P 0.44 TCGA-D3-A5GN-06 6 36492192 36492192 G A STK38 Missense_Mutation p.R78C 0.36 deleterious(0) probably_damaging(0.979) TCGA-D3-A5GN-06 6 36724045 36724045 T A CPNE5 Nonsense_Mutation p.K296* 0.24 TCGA-D3-A5GN-06 6 38885135 38885135 G A DNAH8 Missense_Mutation p.D3204N 0.23 possibly_damaging(0.859) TCGA-D3-A5GN-06 6 39330257 39330257 G C KIF6 Missense_Mutation p.D633E 0.27 tolerated(0.08) benign(0.142) TCGA-D3-A5GN-06 6 42204018 42204018 G A TRERF1 Silent p.P997P 0.32 TCGA-D3-A5GN-06 6 43491482 43491482 G A XPO5 3'UTR 0.06 TCGA-D3-A5GN-06 6 46996743 46996743 C A GPR110 Missense_Mutation p.G19C 0.41 tolerated(0.08) benign(0.007) TCGA-D3-A5GN-06 6 54025323 54025323 C T MLIP Missense_Mutation p.P254S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GN-06 6 57012419 57012419 C T ZNF451 Silent p.V512V 0.55 TCGA-D3-A5GN-06 6 62757842 62757842 C T KHDRBS2 Missense_Mutation p.E93K 0.18 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A5GN-06 6 656649 656649 G A HUS1B Missense_Mutation p.S99F 0.56 tolerated(0.07) benign(0.272) TCGA-D3-A5GN-06 6 73919804 73919804 C T RP11-257K9.8 Splice_Site 0.26 TCGA-D3-A5GN-06 6 85446650 85446650 G A TBX18 Missense_Mutation p.P526L 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GN-06 6 90385232 90385232 G A MDN1 Nonsense_Mutation p.R4238* 0.40 TCGA-D3-A5GN-06 6 90425381 90425381 G A MDN1 Missense_Mutation p.P2284L 0.13 probably_damaging(0.996) TCGA-D3-A5GN-06 7 100204225 100204225 G A PCOLCE Silent p.E304E 0.30 TCGA-D3-A5GN-06 7 100204230 100204230 C A PCOLCE Missense_Mutation p.T306K 0.33 tolerated(0.28) benign(0.034) TCGA-D3-A5GN-06 7 100551975 100551975 C T MUC3A Silent p.I242I 0.15 TCGA-D3-A5GN-06 7 100875633 100875633 G T CLDN15 3'UTR 0.38 TCGA-D3-A5GN-06 7 100884135 100884135 C A FIS1 Silent p.L77L 0.30 TCGA-D3-A5GN-06 7 103234148 103234148 C T RELN Missense_Mutation p.G1298E 0.31 deleterious(0.01) probably_damaging(0.952) TCGA-D3-A5GN-06 7 103244823 103244823 C A RELN Missense_Mutation p.G1039V 0.36 deleterious(0) probably_damaging(0.974) TCGA-D3-A5GN-06 7 115614259 115614259 C T TFEC Missense_Mutation p.E78K 0.36 tolerated(0.24) benign(0.005) TCGA-D3-A5GN-06 7 123109300 123109300 C T IQUB Missense_Mutation p.D517N 0.39 deleterious(0.04) probably_damaging(0.98) TCGA-D3-A5GN-06 7 126544706 126544706 G A GRM8 Silent p.I253I 0.44 TCGA-D3-A5GN-06 7 127229594 127229594 G T ARF5 Silent p.V68V 0.35 TCGA-D3-A5GN-06 7 134618203 134618203 T C CALD1 Missense_Mutation p.L228S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GN-06 7 137206693 137206693 G A DGKI Missense_Mutation p.R723C 0.52 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GN-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GN-06 7 142149006 142149006 G A TRBV5-5 Missense_Mutation p.P89S 0.28 tolerated(1) benign(0.002) TCGA-D3-A5GN-06 7 142326486 142326486 G A TRBV19 5'UTR 0.14 TCGA-D3-A5GN-06 7 142659475 142659475 C T KEL 5'UTR 0.58 TCGA-D3-A5GN-06 7 142750298 142750298 C T OR6V1 Silent p.I287I 0.43 TCGA-D3-A5GN-06 7 143453278 143453278 C T CTAGE6 Missense_Mutation p.E492K 0.10 deleterious(0.05) benign(0.104) TCGA-D3-A5GN-06 7 143772241 143772241 C T OR2A25 Missense_Mutation p.S310L 0.34 deleterious(0) probably_damaging(0.966) TCGA-D3-A5GN-06 7 149544995 149544995 C T ZNF862 Missense_Mutation p.S138F 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A5GN-06 7 149544996 149544996 C T ZNF862 Silent p.S138S 0.40 TCGA-D3-A5GN-06 7 149558091 149558091 C T ZNF862 Silent p.I614I 0.36 TCGA-D3-A5GN-06 7 150972267 150972267 C T SMARCD3 5'UTR 0.35 TCGA-D3-A5GN-06 7 151716751 151716751 G T GALNTL5 Missense_Mutation p.K399N 0.38 tolerated(0.17) benign(0.002) TCGA-D3-A5GN-06 7 19739776 19739776 T A TWISTNB Missense_Mutation p.D175V 0.14 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GN-06 7 20793104 20793104 C T ABCB5 Missense_Mutation p.S1184L 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 7 2946117 2946117 C T CARD11 3'UTR 0.38 TCGA-D3-A5GN-06 7 36917621 36917621 C T ELMO1 Missense_Mutation p.D606N 0.54 tolerated(0.49) benign(0.079) TCGA-D3-A5GN-06 7 4281538 4281538 G A SDK1 Missense_Mutation p.G2082R 0.31 deleterious(0.01) possibly_damaging(0.781) TCGA-D3-A5GN-06 7 6442128 6442128 T C RAC1 3'UTR 0.43 TCGA-D3-A5GN-06 7 73184018 73184018 C G CLDN3 Missense_Mutation p.G121A 0.47 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A5GN-06 7 73184019 73184019 C T CLDN3 Missense_Mutation p.G121S 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 7 81589138 81589138 G A CACNA2D1 Missense_Mutation p.H992Y 0.20 tolerated(0.06) possibly_damaging(0.814) TCGA-D3-A5GN-06 7 82544950 82544950 G A PCLO Missense_Mutation p.P4118S 0.41 unknown(0) TCGA-D3-A5GN-06 7 87908639 87908639 T C STEAP4 3'UTR 0.21 TCGA-D3-A5GN-06 7 98519373 98519373 C T TRRAP Intron 0.42 TCGA-D3-A5GN-06 8 105393510 105393510 G A DPYS Silent p.P492P 0.63 TCGA-D3-A5GN-06 8 113421156 113421156 G A CSMD3 Missense_Mutation p.S1834F 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GN-06 8 116599764 116599764 C G TRPS1 Missense_Mutation p.E722Q 0.62 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-D3-A5GN-06 8 134050865 134050865 G A SLA Silent p.T285T 0.09 TCGA-D3-A5GN-06 8 139164518 139164518 C T FAM135B Missense_Mutation p.E734K 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-D3-A5GN-06 8 139164856 139164856 C T FAM135B Missense_Mutation p.G621E 0.11 tolerated(0.39) benign(0.025) TCGA-D3-A5GN-06 8 139180146 139180146 G A FAM135B Missense_Mutation p.P417L 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GN-06 8 144994511 144994511 G A PLEC Nonsense_Mutation p.R3297* 0.72 TCGA-D3-A5GN-06 8 16032718 16032718 G A MSR1 Silent p.I65I 0.24 TCGA-D3-A5GN-06 8 23049444 23049444 C T TNFRSF10A Silent p.T390T 0.41 TCGA-D3-A5GN-06 8 25174578 25174578 G A DOCK5 Silent p.G458G 0.22 TCGA-D3-A5GN-06 8 27614250 27614250 G A CCDC25 Missense_Mutation p.L52F 0.53 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GN-06 8 3045437 3045437 G A CSMD1 Silent p.I1858I 0.15 TCGA-D3-A5GN-06 8 3224645 3224645 G A CSMD1 Silent p.I1008I 0.17 TCGA-D3-A5GN-06 8 39486953 39486953 G A ADAM18 Missense_Mutation p.A195T 0.25 tolerated(0.08) benign(0.016) TCGA-D3-A5GN-06 8 55538458 55538458 G A RP1 Silent p.K672K 0.47 TCGA-D3-A5GN-06 8 55538936 55538936 G A RP1 Missense_Mutation p.D832N 0.06 tolerated(0.06) benign(0.034) TCGA-D3-A5GN-06 8 6782433 6782433 G A DEFA6 Silent p.F70F 0.37 TCGA-D3-A5GN-06 8 69552686 69552686 C T C8orf34 Missense_Mutation p.P394L 0.07 tolerated(0.1) benign(0.076) TCGA-D3-A5GN-06 8 73849972 73849972 C T KCNB2 Silent p.F794F 0.15 TCGA-D3-A5GN-06 8 74888620 74888620 C T TMEM70 Missense_Mutation p.S35F 0.75 tolerated(0.21) benign(0) TCGA-D3-A5GN-06 8 86392944 86392944 G A CA2 Missense_Mutation p.E237K 0.13 tolerated(0.55) benign(0.036) TCGA-D3-A5GN-06 9 104133441 104133441 C T BAAT Silent p.L82L 0.73 TCGA-D3-A5GN-06 9 119858427 119858427 C T ASTN2 Missense_Mutation p.G340E 0.62 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A5GN-06 9 119903607 119903607 C T ASTN2 Intron 0.69 TCGA-D3-A5GN-06 9 123725050 123725050 G A C5 Missense_Mutation p.P1468L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 9 131353841 131353841 C T SPTAN1 Missense_Mutation p.S1031F 0.16 deleterious(0.02) probably_damaging(0.967) TCGA-D3-A5GN-06 9 132839657 132839660 AGTA - GPR107 Splice_Site p.X129_splice 0.19 TCGA-D3-A5GN-06 9 138457324 138457324 C A PAEP Missense_Mutation p.H164N 0.21 tolerated(0.15) benign(0.315) TCGA-D3-A5GN-06 9 21217208 21217208 C A IFNA16 Missense_Mutation p.G33C 0.19 tolerated(0.13) possibly_damaging(0.904) TCGA-D3-A5GN-06 9 21305245 21305245 G A IFNA5 Missense_Mutation p.P4L 0.75 tolerated(0.59) benign(0.011) TCGA-D3-A5GN-06 9 21971122 21971123 - T CDKN2A Frame_Shift_Ins p.T79Nfs*41 0.43 TCGA-D3-A5GN-06 9 36218285 36218285 A G GNE Silent p.L641L 0.23 TCGA-D3-A5GN-06 9 79325020 79325020 C T PRUNE2 Missense_Mutation p.E724K 0.75 tolerated(0.7) benign(0.001) TCGA-D3-A5GN-06 9 82188651 82188651 C T TLE4 Silent p.S31S 0.60 TCGA-D3-A5GN-06 9 8331706 8331706 G A PTPRD Nonsense_Mutation p.Q1804* 0.60 TCGA-D3-A5GN-06 9 90535766 90535766 C T SPATA31C1 RNA 0.75 TCGA-D3-A5GN-06 X 105011054 105011054 C T IL1RAPL2 Silent p.F487F 0.64 TCGA-D3-A5GN-06 X 105139465 105139465 G A NRK Missense_Mutation p.D177N 0.47 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GN-06 X 106893301 106893301 C T PRPS1 3'UTR 0.56 TCGA-D3-A5GN-06 X 114142000 114142000 C T HTR2C 3'UTR 0.58 TCGA-D3-A5GN-06 X 117727192 117727192 C T DOCK11 Missense_Mutation p.P719S 0.48 deleterious(0) probably_damaging(0.985) TCGA-D3-A5GN-06 X 125685886 125685886 C T DCAF12L1 Missense_Mutation p.E236K 0.53 tolerated(0.61) benign(0.075) TCGA-D3-A5GN-06 X 130410937 130410937 C T IGSF1 Missense_Mutation p.D867N 0.57 tolerated(0.12) benign(0.048) TCGA-D3-A5GN-06 X 140985287 140985287 G A MAGEC3 Intron 0.27 TCGA-D3-A5GN-06 X 149924334 149924334 T G MTMR1 Silent p.P610P 0.62 TCGA-D3-A5GN-06 X 149924335 149924335 C T MTMR1 Nonsense_Mutation p.Q611* 0.62 TCGA-D3-A5GN-06 X 18616669 18616669 C T CDKL5 Missense_Mutation p.R305C 0.23 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-D3-A5GN-06 X 23876823 23876823 G A APOO Missense_Mutation p.P139L 0.57 deleterious(0.01) benign(0.327) TCGA-D3-A5GN-06 X 26157685 26157685 C T MAGEB18 Missense_Mutation p.P195S 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GN-06 X 26212391 26212391 C T MAGEB6 Missense_Mutation p.S143F 0.55 deleterious(0.03) probably_damaging(0.979) TCGA-D3-A5GN-06 X 3240387 3240387 C T MXRA5 Silent p.A1113A 0.51 TCGA-D3-A5GN-06 X 57515255 57515255 C T FAAH2 Missense_Mutation p.P497S 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A5GN-06 X 83126513 83126513 C T CYLC1 Missense_Mutation p.P38S 0.58 tolerated(0.07) probably_damaging(0.996) TCGA-D3-A5GO-06 10 101590492 101590492 C T ABCC2 Missense_Mutation p.H923Y 0.55 tolerated(0.75) benign(0.162) TCGA-D3-A5GO-06 10 101835839 101835839 C T CPN1 Silent p.G83G 0.57 TCGA-D3-A5GO-06 10 102262131 102262131 G A SEC31B Silent p.F430F 0.43 TCGA-D3-A5GO-06 10 102587483 102587483 C T PAX2 3'UTR 0.57 TCGA-D3-A5GO-06 10 104592929 104592929 C T CYP17A1 Missense_Mutation p.D264N 0.64 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A5GO-06 10 105177554 105177554 G A PDCD11 Silent p.V592V 0.56 TCGA-D3-A5GO-06 10 108389027 108389027 G A SORCS1 Silent p.F865F 0.69 TCGA-D3-A5GO-06 10 114136167 114136167 C T ACSL5 Missense_Mutation p.H34Y 0.63 tolerated_low_confidence(0.11) benign(0) TCGA-D3-A5GO-06 10 115383374 115383374 C T NRAP Missense_Mutation p.E791K 0.58 tolerated(0.36) probably_damaging(0.955) TCGA-D3-A5GO-06 10 115409833 115409833 C T NRAP Missense_Mutation p.G284D 0.06 tolerated(0.63) benign(0.005) TCGA-D3-A5GO-06 10 116014795 116014795 C T VWA2 Silent p.I83I 0.61 TCGA-D3-A5GO-06 10 116931016 116931016 T C ATRNL1 Silent p.Y438Y 0.10 TCGA-D3-A5GO-06 10 117228754 117228754 C T ATRNL1 Missense_Mutation p.S1190F 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 10 120877127 120877127 C T FAM45A Silent p.F143F 0.07 TCGA-D3-A5GO-06 10 123892199 123892199 C T TACC2 Silent p.S1883S 0.36 TCGA-D3-A5GO-06 10 124336085 124336085 C T DMBT1 Missense_Mutation p.P152S 0.69 tolerated(0.05) probably_damaging(1) TCGA-D3-A5GO-06 10 124336119 124336119 C T DMBT1 Missense_Mutation p.P163L 0.04 tolerated(0.08) probably_damaging(1) TCGA-D3-A5GO-06 10 124339333 124339333 G A DMBT1 Missense_Mutation p.E307K 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 10 124345791 124345791 G A DMBT1 Missense_Mutation p.D559N 0.62 deleterious(0.01) unknown(0) TCGA-D3-A5GO-06 10 127789803 127789803 C T ADAM12 Missense_Mutation p.R253K 0.73 deleterious(0.05) possibly_damaging(0.852) TCGA-D3-A5GO-06 10 17142112 17142112 G A CUBN Missense_Mutation p.L553F 0.34 tolerated(0.08) possibly_damaging(0.516) TCGA-D3-A5GO-06 10 17142113 17142113 G A CUBN Silent p.S552S 0.34 TCGA-D3-A5GO-06 10 18874971 18874971 G A NSUN6 Nonsense_Mutation p.Q277* 0.73 TCGA-D3-A5GO-06 10 24784116 24784116 G A KIAA1217 Missense_Mutation p.D609N 0.65 tolerated(0.14) possibly_damaging(0.657) TCGA-D3-A5GO-06 10 24833351 24833351 C T KIAA1217 Missense_Mutation p.P1718S 0.66 tolerated(0.19) benign(0.301) TCGA-D3-A5GO-06 10 26359298 26359298 C T MYO3A Missense_Mutation p.L443F 0.11 tolerated(0.06) benign(0.17) TCGA-D3-A5GO-06 10 27702223 27702223 G A PTCHD3 Silent p.A319A 0.69 TCGA-D3-A5GO-06 10 27702397 27702397 G A PTCHD3 Silent p.L261L 0.32 TCGA-D3-A5GO-06 10 28223949 28223949 C T ARMC4 Missense_Mutation p.E829K 0.57 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A5GO-06 10 28272903 28272903 C T ARMC4 Missense_Mutation p.E230K 0.65 tolerated(0.15) benign(0.272) TCGA-D3-A5GO-06 10 37430961 37430961 G A ANKRD30A Missense_Mutation p.R323K 0.55 tolerated(0.5) benign(0.013) TCGA-D3-A5GO-06 10 44052591 44052591 G A ZNF239 Missense_Mutation p.H313Y 0.57 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 10 44112749 44112749 C T ZNF485 Missense_Mutation p.P420S 0.76 tolerated(0.87) benign(0.002) TCGA-D3-A5GO-06 10 45924212 45924212 G A ALOX5 Silent p.Q327Q 0.72 TCGA-D3-A5GO-06 10 49371426 49371426 C T FRMPD2 Missense_Mutation p.E1276K 0.66 deleterious(0.03) benign(0.275) TCGA-D3-A5GO-06 10 49457098 49457098 C T FRMPD2 Missense_Mutation p.G92E 0.53 tolerated(0.16) benign(0.015) TCGA-D3-A5GO-06 10 50531036 50531036 C T C10orf71 Missense_Mutation p.S149F 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 10 50724338 50724338 G A ERCC6-PGBD3 Missense_Mutation p.P743S 0.42 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A5GO-06 10 5203863 5203863 C T AKR1CL1 Missense_Mutation p.D112N 0.42 deleterious(0.02) benign(0.17) TCGA-D3-A5GO-06 10 52103734 52103734 G A SGMS1 Silent p.P47P 0.82 TCGA-D3-A5GO-06 10 52580390 52580390 C T A1CF Silent p.K271K 0.71 TCGA-D3-A5GO-06 10 55913000 55913000 G A PCDH15 Silent p.I548I 0.71 TCGA-D3-A5GO-06 10 61830330 61830330 G A ANK3 Nonsense_Mutation p.Q3437* 0.67 TCGA-D3-A5GO-06 10 61946604 61946604 C T ANK3 Missense_Mutation p.E652K 0.70 possibly_damaging(0.864) TCGA-D3-A5GO-06 10 61956365 61956365 G A ANK3 Missense_Mutation p.H570Y 0.69 probably_damaging(0.995) TCGA-D3-A5GO-06 10 63852508 63852508 C T ARID5B Missense_Mutation p.P1096S 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-D3-A5GO-06 10 68526081 68526081 C T CTNNA3 Missense_Mutation p.E408K 0.45 deleterious(0.01) benign(0.393) TCGA-D3-A5GO-06 10 68535278 68535278 C T CTNNA3 Missense_Mutation p.G351E 0.58 deleterious(0) possibly_damaging(0.563) TCGA-D3-A5GO-06 10 68940198 68940198 G A CTNNA3 Silent p.I308I 0.81 TCGA-D3-A5GO-06 10 82126699 82126699 C T DYDC2 Missense_Mutation p.P190S 0.69 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A5GO-06 10 82182205 82182205 G A FAM213A Missense_Mutation p.E71K 0.32 tolerated(0.49) benign(0.003) TCGA-D3-A5GO-06 10 90356597 90356597 C T LIPJ Silent p.F209F 0.65 TCGA-D3-A5GO-06 10 95335855 95335855 C T FFAR4 Missense_Mutation p.S192L 0.57 tolerated(0.67) benign(0.002) TCGA-D3-A5GO-06 10 96522574 96522574 G A CYP2C19 Missense_Mutation p.V38M 0.09 deleterious(0) benign(0.199) TCGA-D3-A5GO-06 10 96541742 96541742 C T CYP2C19 Silent p.I269I 0.55 TCGA-D3-A5GO-06 10 96602692 96602692 G A CYP2C19 Missense_Mutation p.E354K 0.72 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 10 98778824 98778824 G A SLIT1 Silent p.C929C 0.66 TCGA-D3-A5GO-06 10 99968038 99968038 T A R3HCC1L Missense_Mutation p.L56H 0.64 tolerated(0.07) probably_damaging(0.957) TCGA-D3-A5GO-06 11 100211856 100211856 G A CNTN5 Nonsense_Mutation p.W983* 0.34 TCGA-D3-A5GO-06 11 100221556 100221556 G A CNTN5 Missense_Mutation p.G1052R 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 11 101344500 101344500 C T TRPC6 Silent p.R583R 0.23 TCGA-D3-A5GO-06 11 104912355 104912355 C T CARD16 Silent p.R122R 0.30 TCGA-D3-A5GO-06 11 10622562 10622562 C T MRVI1 Silent p.V640V 0.31 TCGA-D3-A5GO-06 11 108546451 108546451 C T DDX10 Missense_Mutation p.P126S 0.34 deleterious(0.02) possibly_damaging(0.827) TCGA-D3-A5GO-06 11 110104137 110104137 G A RDX Missense_Mutation p.P471L 0.32 tolerated(0.28) benign(0.02) TCGA-D3-A5GO-06 11 110104138 110104138 G A RDX Missense_Mutation p.P471S 0.33 tolerated(0.82) benign(0.41) TCGA-D3-A5GO-06 11 110327751 110327751 G C FDX1 Silent p.L140L 0.36 TCGA-D3-A5GO-06 11 111228321 111228321 C T POU2AF1 Nonsense_Mutation p.W102* 0.40 TCGA-D3-A5GO-06 11 111746136 111746136 G A FDXACB1 Missense_Mutation p.T462I 0.52 tolerated(0.18) benign(0.001) TCGA-D3-A5GO-06 11 111746137 111746137 T C FDXACB1 Missense_Mutation p.T462A 0.51 tolerated(1) benign(0) TCGA-D3-A5GO-06 11 111749855 111749855 A T FDXACB1 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-D3-A5GO-06 11 113270852 113270852 C T ANKK1 Nonsense_Mutation p.Q721* 0.27 TCGA-D3-A5GO-06 11 113286151 113286151 G A DRD2 Missense_Mutation p.P239S 0.38 tolerated(0.14) benign(0.038) TCGA-D3-A5GO-06 11 113651042 113651042 C T CLDN25 Silent p.F175F 0.44 TCGA-D3-A5GO-06 11 113660984 113660984 C T ATF4P4 RNA 0.22 TCGA-D3-A5GO-06 11 113852011 113852011 C T HTR3A Silent p.V123V 0.39 TCGA-D3-A5GO-06 11 116692146 116692146 C T APOA4 Missense_Mutation p.V210I 0.38 tolerated(0.08) benign(0.358) TCGA-D3-A5GO-06 11 117301690 117301690 C T DSCAML1 Missense_Mutation p.A1872T 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 11 117302341 117302341 G A DSCAML1 Silent p.T1821T 0.15 TCGA-D3-A5GO-06 11 117375660 117375660 C T DSCAML1 Missense_Mutation p.V781I 0.39 tolerated(0.65) benign(0.013) TCGA-D3-A5GO-06 11 117391964 117391964 C T DSCAML1 Missense_Mutation p.G425E 0.40 deleterious(0.04) probably_damaging(0.965) TCGA-D3-A5GO-06 11 117391965 117391965 C T DSCAML1 Missense_Mutation p.G425R 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GO-06 11 118764554 118764554 G A CXCR5 Missense_Mutation p.V101I 0.47 deleterious(0.04) possibly_damaging(0.705) TCGA-D3-A5GO-06 11 119170443 119170443 C T CBL Silent p.I891I 0.41 TCGA-D3-A5GO-06 11 121058619 121058619 C T TECTA Silent p.V2026V 0.23 TCGA-D3-A5GO-06 11 1213362 1213362 C T MUC5AC RNA 0.09 TCGA-D3-A5GO-06 11 121358855 121358855 G A SORL1 Missense_Mutation p.A215T 0.41 tolerated(0.57) benign(0.08) TCGA-D3-A5GO-06 11 121495971 121495971 G A SORL1 Missense_Mutation p.D2117N 0.47 tolerated(0.16) benign(0.008) TCGA-D3-A5GO-06 11 12341346 12341346 C T MICALCL Silent p.S510S 0.29 TCGA-D3-A5GO-06 11 123753976 123753976 C T TMEM225 Missense_Mutation p.E183K 0.33 tolerated(0.8) possibly_damaging(0.636) TCGA-D3-A5GO-06 11 123814345 123814345 G A OR6T1 Silent p.S67S 0.38 TCGA-D3-A5GO-06 11 123848276 123848276 G A OR10S1 Silent p.F41F 0.46 TCGA-D3-A5GO-06 11 123894476 123894476 C T OR10G9 Missense_Mutation p.P253S 0.34 deleterious(0.01) possibly_damaging(0.571) TCGA-D3-A5GO-06 11 123908929 123908929 C T OR10G7 Silent p.R260R 0.36 TCGA-D3-A5GO-06 11 124267062 124267062 G A OR8B3 Silent p.F62F 0.30 TCGA-D3-A5GO-06 11 124294721 124294721 C T OR8B4 Missense_Mutation p.G16E 0.47 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-D3-A5GO-06 11 124310278 124310278 G A OR8B8 Missense_Mutation p.S235F 0.42 tolerated_low_confidence(0.06) benign(0.062) TCGA-D3-A5GO-06 11 124626244 124626244 G A ESAM Missense_Mutation p.P156S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GO-06 11 124766094 124766094 C T ROBO4 Missense_Mutation p.E227K 0.30 deleterious(0.02) benign(0.026) TCGA-D3-A5GO-06 11 124789990 124789990 G A HEPACAM 3'UTR 0.45 TCGA-D3-A5GO-06 11 126134947 126134947 G A SRPR Missense_Mutation p.P478S 0.36 tolerated(0.12) benign(0.34) TCGA-D3-A5GO-06 11 126276448 126276448 G T ST3GAL4 Nonsense_Mutation p.E33* 0.28 TCGA-D3-A5GO-06 11 1265952 1265952 G A MUC5B Silent p.T2614T 0.40 TCGA-D3-A5GO-06 11 1272003 1272003 A C MUC5B Silent p.T4631T 0.37 TCGA-D3-A5GO-06 11 128634703 128634703 G A FLI1 Intron 0.23 TCGA-D3-A5GO-06 11 128634704 128634704 G A FLI1 Intron 0.23 TCGA-D3-A5GO-06 11 130343515 130343515 C T ADAMTS15 Silent p.P884P 0.38 TCGA-D3-A5GO-06 11 130784873 130784873 C T SNX19 Missense_Mutation p.G321D 0.41 tolerated(0.17) possibly_damaging(0.771) TCGA-D3-A5GO-06 11 130784874 130784874 C T SNX19 Missense_Mutation p.G321S 0.40 tolerated(0.43) benign(0.444) TCGA-D3-A5GO-06 11 132812839 132812839 C T OPCML Missense_Mutation p.G50E 0.31 deleterious(0) probably_damaging(0.952) TCGA-D3-A5GO-06 11 14479229 14479229 G A COPB1 3'UTR 0.52 TCGA-D3-A5GO-06 11 15098834 15098834 C T CALCB Missense_Mutation p.S76F 0.39 deleterious(0.03) benign(0.073) TCGA-D3-A5GO-06 11 1586955 1586955 G A DUSP8 Silent p.S34S 0.38 TCGA-D3-A5GO-06 11 1643027 1643027 C T KRTAP5-4 Silent p.G99G 0.06 TCGA-D3-A5GO-06 11 17096727 17096727 G A RPS13 Silent p.F113F 0.35 TCGA-D3-A5GO-06 11 1874426 1874426 G A LSP1 Missense_Mutation p.G18R 0.32 tolerated(0.48) benign(0.006) TCGA-D3-A5GO-06 11 19077101 19077101 G A MRGPRX2 Silent p.G283G 0.38 TCGA-D3-A5GO-06 11 19197496 19197496 C T ZDHHC13 Missense_Mutation p.R620C 0.31 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-D3-A5GO-06 11 1956113 1956113 C T TNNT3 Silent p.F215F 0.41 TCGA-D3-A5GO-06 11 22225352 22225352 G A ANO5 Missense_Mutation p.E15K 0.21 tolerated_low_confidence(0.93) benign(0.001) TCGA-D3-A5GO-06 11 2338710 2338710 G T TSPAN32 Missense_Mutation p.D286Y 0.55 tolerated_low_confidence(0.1) benign(0.187) TCGA-D3-A5GO-06 11 26484631 26484631 G A ANO3 Missense_Mutation p.R123Q 0.32 tolerated(0.72) benign(0.003) TCGA-D3-A5GO-06 11 2683248 2683248 G A KCNQ1 Missense_Mutation p.S484N 0.45 tolerated(0.05) probably_damaging(0.978) TCGA-D3-A5GO-06 11 31312269 31312269 G A DCDC1 Silent p.V295V 0.21 TCGA-D3-A5GO-06 11 32953298 32953298 C T QSER1 Missense_Mutation p.S36F 0.44 deleterious(0) probably_damaging(0.949) TCGA-D3-A5GO-06 11 33631484 33631484 T C KIAA1549L Missense_Mutation p.C1454R 0.45 tolerated(0.48) benign(0.156) TCGA-D3-A5GO-06 11 34133673 34133673 C T NAT10 Missense_Mutation p.P92L 0.35 deleterious(0.05) possibly_damaging(0.566) TCGA-D3-A5GO-06 11 3735152 3735152 G A NUP98 Missense_Mutation p.R825C 0.41 deleterious(0) probably_damaging(0.941) TCGA-D3-A5GO-06 11 376088 376088 C T B4GALNT4 Silent p.F370F 0.24 TCGA-D3-A5GO-06 11 40137125 40137125 G A LRRC4C Nonsense_Mutation p.Q240* 0.42 TCGA-D3-A5GO-06 11 4389049 4389049 G A OR52B4 Silent p.F159F 0.46 TCGA-D3-A5GO-06 11 44105063 44105063 C T ACCS Silent p.F448F 0.35 TCGA-D3-A5GO-06 11 4567189 4567189 C T OR52M1 Missense_Mutation p.P257S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GO-06 11 4661061 4661061 C T OR51D1 Missense_Mutation p.S14L 0.40 tolerated(0.34) benign(0.001) TCGA-D3-A5GO-06 11 46740773 46740773 G A F2 5'UTR 0.47 TCGA-D3-A5GO-06 11 46900826 46900826 G A LRP4 Missense_Mutation p.T952I 0.40 deleterious(0.05) possibly_damaging(0.703) TCGA-D3-A5GO-06 11 4703095 4703095 G A OR51E2 Missense_Mutation p.P283S 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 11 4703589 4703589 G A OR51E2 Missense_Mutation p.A118V 0.44 deleterious(0) possibly_damaging(0.505) TCGA-D3-A5GO-06 11 4825489 4825489 G A OR52R1 Missense_Mutation p.A41V 0.36 deleterious(0.03) possibly_damaging(0.721) TCGA-D3-A5GO-06 11 48267036 48267036 C T OR4X2 Silent p.I127I 0.46 TCGA-D3-A5GO-06 11 48267569 48267569 G A OR4X2 3'UTR 0.36 TCGA-D3-A5GO-06 11 4945190 4945190 G A OR51G1 Missense_Mutation p.A127V 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 11 5020744 5020744 C T OR51L1 Missense_Mutation p.H178Y 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A5GO-06 11 5068091 5068091 G A OR52J3 Missense_Mutation p.M112I 0.45 tolerated(0.08) benign(0.012) TCGA-D3-A5GO-06 11 5080848 5080848 G A OR52E2 Missense_Mutation p.P4S 0.42 tolerated(0.52) benign(0.004) TCGA-D3-A5GO-06 11 5172775 5172775 G A OR52A1 Silent p.I275I 0.41 TCGA-D3-A5GO-06 11 5344806 5344806 G A OR51B2 Missense_Mutation p.S241F 0.46 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 11 5410947 5410947 G A OR51M1 Missense_Mutation p.G107R 0.38 deleterious(0.01) benign(0.155) TCGA-D3-A5GO-06 11 55419098 55419098 C T OR4S2 Missense_Mutation p.S240F 0.81 deleterious(0) possibly_damaging(0.819) TCGA-D3-A5GO-06 11 55540972 55540972 C T OR5D13 Missense_Mutation p.S20L 0.39 deleterious(0) benign(0.167) TCGA-D3-A5GO-06 11 5566080 5566080 G A OR52H1 Missense_Mutation p.S225F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 11 55872708 55872708 C T OR8H2 Missense_Mutation p.L64F 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A5GO-06 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.17 TCGA-D3-A5GO-06 11 55890636 55890636 G A OR8H3 Missense_Mutation p.R263K 0.31 tolerated(0.96) benign(0.002) TCGA-D3-A5GO-06 11 56057777 56057777 C T OR8H1 Missense_Mutation p.M254I 0.41 tolerated(0.22) benign(0.008) TCGA-D3-A5GO-06 11 56114245 56114245 T C OR8K1 Missense_Mutation p.F244S 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A5GO-06 11 56143765 56143765 T G OR8U1 Missense_Mutation p.I222M 0.35 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A5GO-06 11 56380921 56380921 C T OR5M1 Missense_Mutation p.D20N 0.44 tolerated(0.31) benign(0.012) TCGA-D3-A5GO-06 11 58207369 58207369 C T OR5B12 Missense_Mutation p.G86R 0.36 tolerated_low_confidence(0.07) benign(0.101) TCGA-D3-A5GO-06 11 58207445 58207445 G A OR5B12 Silent p.F60F 0.31 TCGA-D3-A5GO-06 11 5841679 5841679 C T OR52N2 Silent p.I38I 0.45 TCGA-D3-A5GO-06 11 5842048 5842048 C T OR52N2 Silent p.F161F 0.39 TCGA-D3-A5GO-06 11 58602305 58602305 C T GLYATL2 Missense_Mutation p.G161E 0.42 tolerated(1) benign(0.001) TCGA-D3-A5GO-06 11 58722282 58722282 C T GLYATL1 Missense_Mutation p.R107C 0.37 deleterious(0.05) benign(0.002) TCGA-D3-A5GO-06 11 5878393 5878393 G A OR52E8 Silent p.I180I 0.41 TCGA-D3-A5GO-06 11 59361107 59361107 G A OSBP Nonsense_Mutation p.R550* 0.53 TCGA-D3-A5GO-06 11 62286124 62286124 G A AHNAK Silent p.V5255V 0.33 TCGA-D3-A5GO-06 11 62340067 62340067 G A EEF1G Missense_Mutation p.P54S 0.37 tolerated(0.06) possibly_damaging(0.831) TCGA-D3-A5GO-06 11 62416552 62416552 G A INTS5 Missense_Mutation p.L334F 0.19 deleterious(0.04) possibly_damaging(0.454) TCGA-D3-A5GO-06 11 62416553 62416553 G A INTS5 Silent p.S333S 0.18 TCGA-D3-A5GO-06 11 64418968 64418968 T C NRXN2 Missense_Mutation p.M893V 0.39 deleterious(0.01) possibly_damaging(0.535) TCGA-D3-A5GO-06 11 64673916 64673916 C T ATG2A Missense_Mutation p.E1025K 0.36 deleterious(0) benign(0.394) TCGA-D3-A5GO-06 11 65366992 65366992 G A MAP3K11 Silent p.S693S 0.47 TCGA-D3-A5GO-06 11 65425951 65425951 G A RELA Silent p.F228F 0.40 TCGA-D3-A5GO-06 11 65617689 65617689 G A SNX32 Silent p.G107G 0.34 TCGA-D3-A5GO-06 11 65623182 65623182 G A CFL1 Missense_Mutation p.L111F 0.47 tolerated(0.07) benign(0.319) TCGA-D3-A5GO-06 11 66108723 66108723 G A BRMS1 Silent p.P104P 0.36 TCGA-D3-A5GO-06 11 67172938 67172938 G A TBC1D10C Silent p.G107G 0.35 TCGA-D3-A5GO-06 11 67560710 67560710 G A FAM86C2P RNA 0.30 TCGA-D3-A5GO-06 11 67809240 67809240 C T TCIRG1 Silent p.A46A 0.43 TCGA-D3-A5GO-06 11 68671288 68671288 C T MRPL21 5'UTR 0.36 TCGA-D3-A5GO-06 11 687963 687963 G A DEAF1 Silent p.P204P 0.48 TCGA-D3-A5GO-06 11 687964 687964 G A DEAF1 Missense_Mutation p.P204L 0.47 deleterious(0.02) probably_damaging(0.928) TCGA-D3-A5GO-06 11 70319045 70319045 C T SHANK2 Missense_Mutation p.D1828N 0.46 deleterious(0) possibly_damaging(0.831) TCGA-D3-A5GO-06 11 7083593 7083593 G A NLRP14 Missense_Mutation p.C945Y 0.33 deleterious(0.04) benign(0.062) TCGA-D3-A5GO-06 11 7083595 7083595 T G NLRP14 Missense_Mutation p.C946G 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 11 71804597 71804597 G A LRTOMT 5'UTR 0.45 TCGA-D3-A5GO-06 11 72084027 72084027 G A CLPB Silent p.I226I 0.46 TCGA-D3-A5GO-06 11 72549866 72549866 C T FCHSD2 Silent p.K731K 0.19 TCGA-D3-A5GO-06 11 72945775 72945775 C T P2RY2 Missense_Mutation p.L191F 0.42 tolerated(0.09) possibly_damaging(0.771) TCGA-D3-A5GO-06 11 72945979 72945979 C T P2RY2 Silent p.L259L 0.31 TCGA-D3-A5GO-06 11 73759361 73759361 G A C2CD3 Missense_Mutation p.S1795F 0.28 deleterious(0.02) possibly_damaging(0.89) TCGA-D3-A5GO-06 11 75501756 75501756 C T DGAT2 Nonsense_Mutation p.R137* 0.36 TCGA-D3-A5GO-06 11 76062171 76062171 G A PRKRIR Missense_Mutation p.P675S 0.21 deleterious(0.01) possibly_damaging(0.79) TCGA-D3-A5GO-06 11 76370873 76370873 G A LRRC32 Silent p.G588G 0.18 TCGA-D3-A5GO-06 11 76796028 76796028 C T CAPN5 Silent p.F32F 0.28 TCGA-D3-A5GO-06 11 76893104 76893104 C T MYO7A Silent p.F1004F 0.39 TCGA-D3-A5GO-06 11 7725292 7725292 G A OVCH2 Silent p.I81I 0.62 TCGA-D3-A5GO-06 11 7981250 7981250 C T NLRP10 Missense_Mutation p.E637K 0.22 tolerated(0.64) benign(0.005) TCGA-D3-A5GO-06 11 7982099 7982099 G A NLRP10 Missense_Mutation p.P354S 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 11 88323880 88323880 C T GRM5 Missense_Mutation p.E527K 0.42 deleterious(0.04) possibly_damaging(0.799) TCGA-D3-A5GO-06 11 89768619 89768619 C T TRIM49C Silent p.V80V 0.40 TCGA-D3-A5GO-06 11 92088127 92088127 C T FAT3 Missense_Mutation p.P950L 0.47 probably_damaging(0.946) TCGA-D3-A5GO-06 11 9215151 9215151 G A DENND5A Missense_Mutation p.P343S 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 11 92495273 92495273 C T FAT3 Silent p.D1307D 0.41 TCGA-D3-A5GO-06 11 92495274 92495274 C T FAT3 Missense_Mutation p.P1308S 0.40 probably_damaging(0.973) TCGA-D3-A5GO-06 11 93800916 93800916 G A HEPHL1 Missense_Mutation p.A355T 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A5GO-06 11 93803566 93803566 G A HEPHL1 Missense_Mutation p.D364N 0.36 tolerated(0.09) benign(0.002) TCGA-D3-A5GO-06 12 100774486 100774486 G A SLC17A8 Missense_Mutation p.D37N 0.16 tolerated(0.32) probably_damaging(0.999) TCGA-D3-A5GO-06 12 101577952 101577952 G A SLC5A8 Missense_Mutation p.P338S 0.69 deleterious(0.01) possibly_damaging(0.777) TCGA-D3-A5GO-06 12 101581230 101581230 G A SLC5A8 Silent p.L299L 0.38 TCGA-D3-A5GO-06 12 101603398 101603398 C T SLC5A8 Missense_Mutation p.E77K 0.18 deleterious(0) possibly_damaging(0.902) TCGA-D3-A5GO-06 12 102043044 102043044 G A MYBPC1 Silent p.K376K 0.16 TCGA-D3-A5GO-06 12 104078786 104078786 C T STAB2 Missense_Mutation p.S974L 0.52 tolerated(0.09) benign(0.137) TCGA-D3-A5GO-06 12 104121068 104121068 C T STAB2 Silent p.V1625V 0.25 TCGA-D3-A5GO-06 12 104140482 104140482 G A STAB2 Missense_Mutation p.V2082I 0.50 deleterious(0) benign(0.257) TCGA-D3-A5GO-06 12 10532349 10532349 C T KLRK1 Missense_Mutation p.G64E 0.64 deleterious(0) probably_damaging(0.923) TCGA-D3-A5GO-06 12 10572171 10572171 G A KLRC3 Intron 0.46 TCGA-D3-A5GO-06 12 106460688 106460688 C T NUAK1 Silent p.K626K 0.50 TCGA-D3-A5GO-06 12 106480593 106480593 G A NUAK1 Silent p.I144I 0.23 TCGA-D3-A5GO-06 12 109017137 109017137 G A SELPLG Missense_Mutation p.S332F 0.53 deleterious(0) possibly_damaging(0.891) TCGA-D3-A5GO-06 12 10962343 10962343 A T TAS2R9 Missense_Mutation p.I111K 0.31 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 12 109696852 109696852 C T ACACB Silent p.N2145N 0.45 TCGA-D3-A5GO-06 12 10978126 10978126 G A TAS2R10 Missense_Mutation p.S248L 0.52 tolerated(1) benign(0.009) TCGA-D3-A5GO-06 12 109939175 109939175 G A UBE3B Splice_Site p.X373_splice 0.41 TCGA-D3-A5GO-06 12 110778514 110778514 C T ATP2A2 Silent p.I604I 0.26 TCGA-D3-A5GO-06 12 111089052 111089052 G A HVCN1 Missense_Mutation p.R205W 0.06 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 12 112528546 112528546 G A NAA25 Silent p.Y89Y 0.42 TCGA-D3-A5GO-06 12 112650372 112650372 G A HECTD4 Silent p.F2370F 0.27 TCGA-D3-A5GO-06 12 113304595 113304595 A C RPH3A Missense_Mutation p.N132H 0.30 deleterious(0) benign(0.216) TCGA-D3-A5GO-06 12 113321160 113321160 C T RPH3A Silent p.L463L 0.28 TCGA-D3-A5GO-06 12 113770644 113770644 C T SLC8B1 Missense_Mutation p.V14M 0.28 tolerated_low_confidence(0.22) benign(0.044) TCGA-D3-A5GO-06 12 113875985 113875985 C T SDSL 3'UTR 0.52 TCGA-D3-A5GO-06 12 11420711 11420711 G A PRB3 Missense_Mutation p.R158C 0.22 deleterious(0.02) unknown(0) TCGA-D3-A5GO-06 12 11420774 11420774 G A PRB3 Missense_Mutation p.R137C 0.19 deleterious(0.01) unknown(0) TCGA-D3-A5GO-06 12 11461252 11461252 C T PRB4 Missense_Mutation p.G222E 0.51 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GO-06 12 117723978 117723978 G A NOS1 Silent p.I407I 0.53 TCGA-D3-A5GO-06 12 119592120 119592120 G A SRRM4 Silent p.R488R 0.21 TCGA-D3-A5GO-06 12 119957972 119957972 G A CCDC60 Missense_Mutation p.E339K 0.28 tolerated(0.37) benign(0.167) TCGA-D3-A5GO-06 12 121947466 121947466 C T KDM2B Silent p.L517L 0.54 TCGA-D3-A5GO-06 12 123338711 123338711 C T HIP1R Silent p.L233L 0.50 TCGA-D3-A5GO-06 12 124191384 124191384 C T TCTN2 Silent p.P627P 0.20 TCGA-D3-A5GO-06 12 124311429 124311429 G A DNAH10 Missense_Mutation p.E1341K 0.50 benign(0.273) TCGA-D3-A5GO-06 12 124323032 124323032 G A DNAH10 Silent p.V1526V 0.24 TCGA-D3-A5GO-06 12 12483131 12483131 G A MANSC1 Nonsense_Mutation p.Q376* 0.29 TCGA-D3-A5GO-06 12 125437078 125437078 G A DHX37 Missense_Mutation p.P912S 0.15 deleterious(0.01) possibly_damaging(0.817) TCGA-D3-A5GO-06 12 126068437 126068437 C T TMEM132B Missense_Mutation p.P440L 0.25 tolerated(0.06) benign(0.028) TCGA-D3-A5GO-06 12 126139164 126139164 G A TMEM132B Missense_Mutation p.D1049N 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-D3-A5GO-06 12 130935880 130935880 C T RIMBP2 Missense_Mutation p.E105K 0.50 tolerated(0.07) benign(0.005) TCGA-D3-A5GO-06 12 132685754 132685754 C T GALNT9 Missense_Mutation p.R73K 0.13 tolerated(0.53) benign(0.003) TCGA-D3-A5GO-06 12 14688711 14688711 A G PLBD1 Silent p.L242L 0.19 TCGA-D3-A5GO-06 12 15733004 15733004 G A PTPRO Missense_Mutation p.M984I 0.35 tolerated(0.34) benign(0.004) TCGA-D3-A5GO-06 12 19506821 19506821 C T PLEKHA5 Missense_Mutation p.S1008F 0.53 deleterious(0.01) possibly_damaging(0.781) TCGA-D3-A5GO-06 12 1983779 1983779 C T CACNA2D4 Missense_Mutation p.M623I 0.57 tolerated(0.07) benign(0) TCGA-D3-A5GO-06 12 20903668 20903668 G A SLCO1C1 Missense_Mutation p.G620R 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GO-06 12 21054378 21054378 G A SLCO1B3 Silent p.R614R 0.29 TCGA-D3-A5GO-06 12 21172275 21172275 G A SLCO1B7 Missense_Mutation p.G60E 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 12 21196486 21196486 A T SLCO1B7 Nonsense_Mutation p.K269* 0.64 TCGA-D3-A5GO-06 12 21457486 21457486 G A SLCO1A2 Missense_Mutation p.S155L 0.23 tolerated(0.06) probably_damaging(0.973) TCGA-D3-A5GO-06 12 21614955 21614955 C T PYROXD1 Silent p.V298V 0.18 TCGA-D3-A5GO-06 12 26208191 26208191 C T RASSF8 5'UTR 0.40 TCGA-D3-A5GO-06 12 2721172 2721172 A T CACNA1C Missense_Mutation p.K1294I 0.22 deleterious(0) possibly_damaging(0.891) TCGA-D3-A5GO-06 12 2973534 2973534 C T FOXM1 Missense_Mutation p.M406I 0.56 tolerated(0.2) benign(0.138) TCGA-D3-A5GO-06 12 32134683 32134683 C T KIAA1551 Missense_Mutation p.P265L 0.16 tolerated(0.3) benign(0.009) TCGA-D3-A5GO-06 12 33030890 33030890 G A PKP2 Silent p.V308V 0.53 TCGA-D3-A5GO-06 12 40114657 40114657 G A C12orf40 Silent p.K521K 0.29 TCGA-D3-A5GO-06 12 41961618 41961618 G T PDZRN4 Nonsense_Mutation p.E501* 0.26 TCGA-D3-A5GO-06 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.27 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A5GO-06 12 4409122 4409122 G A CCND2 Missense_Mutation p.D273N 0.13 tolerated(0.29) benign(0.012) TCGA-D3-A5GO-06 12 4553335 4553335 G A FGF6 Silent p.F138F 0.64 TCGA-D3-A5GO-06 12 45567046 45567046 A G PLEKHA8P1 RNA 0.26 TCGA-D3-A5GO-06 12 46321331 46321331 G A SCAF11 Missense_Mutation p.P718L 0.60 deleterious(0) possibly_damaging(0.873) TCGA-D3-A5GO-06 12 46633651 46633651 G A SLC38A1 5'UTR 0.45 TCGA-D3-A5GO-06 12 47173646 47173646 C T SLC38A4 Splice_Site p.X192_splice 0.34 TCGA-D3-A5GO-06 12 47186797 47186797 C T SLC38A4 Missense_Mutation p.G20R 0.49 tolerated(0.06) benign(0.352) TCGA-D3-A5GO-06 12 4736456 4736456 G A AKAP3 Missense_Mutation p.H538Y 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A5GO-06 12 4736883 4736883 C T AKAP3 Silent p.R395R 0.45 TCGA-D3-A5GO-06 12 48062756 48062756 G A RPAP3 Silent p.L552L 0.52 TCGA-D3-A5GO-06 12 48367985 48367985 C T COL2A1 Missense_Mutation p.E1402K 0.48 unknown(0) TCGA-D3-A5GO-06 12 48578275 48578275 G A C12orf68 Missense_Mutation p.G124R 0.56 deleterious_low_confidence(0.02) benign(0.323) TCGA-D3-A5GO-06 12 48597048 48597048 C T OR10AD1 Missense_Mutation p.E10K 0.12 deleterious(0) benign(0.01) TCGA-D3-A5GO-06 12 48723366 48723366 G A H1FNT Missense_Mutation p.E98K 0.50 tolerated(0.11) benign(0.003) TCGA-D3-A5GO-06 12 4872537 4872537 C T GALNT8 Missense_Mutation p.T493I 0.33 deleterious(0) benign(0.282) TCGA-D3-A5GO-06 12 4872538 4872538 C T GALNT8 Silent p.T493T 0.33 TCGA-D3-A5GO-06 12 48920255 48920255 C T OR8S1 Missense_Mutation p.P281S 0.16 tolerated(0.13) probably_damaging(0.982) TCGA-D3-A5GO-06 12 49724537 49724537 C T TROAP Missense_Mutation p.P637S 0.16 tolerated(0.31) benign(0.124) TCGA-D3-A5GO-06 12 49724538 49724538 C T TROAP Missense_Mutation p.P637L 0.16 tolerated(0.09) benign(0.178) TCGA-D3-A5GO-06 12 50188994 50188994 G A NCKAP5L Silent p.I883I 0.55 TCGA-D3-A5GO-06 12 51853873 51853873 G A SLC4A8 Missense_Mutation p.E332K 0.19 deleterious(0) possibly_damaging(0.591) TCGA-D3-A5GO-06 12 52163680 52163680 G A SCN8A Missense_Mutation p.G1134E 0.53 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A5GO-06 12 52282027 52282027 G A ANKRD33 Silent p.L19L 0.49 TCGA-D3-A5GO-06 12 52309872 52309872 C G ACVRL1 Missense_Mutation p.N367K 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 12 52699530 52699530 G A KRT86 Missense_Mutation p.M328I 0.30 tolerated(0.2) benign(0.013) TCGA-D3-A5GO-06 12 52842734 52842734 G A KRT6B Silent p.I365I 0.47 TCGA-D3-A5GO-06 12 52864331 52864331 C T KRT6C Missense_Mutation p.M387I 0.35 tolerated(0.05) benign(0.085) TCGA-D3-A5GO-06 12 52908853 52908853 C T KRT5 Missense_Mutation p.G549E 0.30 tolerated(0.08) unknown(0) TCGA-D3-A5GO-06 12 53069518 53069518 C T KRT1 Missense_Mutation p.E496K 0.49 deleterious(0) possibly_damaging(0.701) TCGA-D3-A5GO-06 12 53086390 53086390 C T KRT77 Silent p.E414E 0.52 TCGA-D3-A5GO-06 12 53189322 53189322 C T KRT3 Missense_Mutation p.G169R 0.57 deleterious(0) unknown(0) TCGA-D3-A5GO-06 12 53228033 53228033 G A KRT79 Silent p.S4S 0.31 TCGA-D3-A5GO-06 12 53345398 53345398 G A KRT18 Missense_Mutation p.R264Q 0.57 tolerated(0.76) benign(0.037) TCGA-D3-A5GO-06 12 53345616 53345616 C T KRT18 Silent p.I308I 0.55 TCGA-D3-A5GO-06 12 53495900 53495900 G A IGFBP6 Silent p.G224G 0.18 TCGA-D3-A5GO-06 12 547701 547701 C T CCDC77 Missense_Mutation p.A341V 0.65 tolerated(0.32) benign(0.047) TCGA-D3-A5GO-06 12 54968997 54968997 C T PDE1B Missense_Mutation p.R394C 0.24 deleterious(0) possibly_damaging(0.848) TCGA-D3-A5GO-06 12 549873 549873 C T CCDC77 Missense_Mutation p.R378C 0.19 deleterious(0.01) benign(0.135) TCGA-D3-A5GO-06 12 55025539 55025539 C T LACRT Missense_Mutation p.G113E 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-D3-A5GO-06 12 55421006 55421006 G A NEUROD4 Silent p.G261G 0.31 TCGA-D3-A5GO-06 12 55887086 55887086 C T OR6C68 Missense_Mutation p.R309C 0.40 deleterious_low_confidence(0.02) benign(0.016) TCGA-D3-A5GO-06 12 56094848 56094848 C T ITGA7 Missense_Mutation p.D169N 0.43 tolerated(0.16) possibly_damaging(0.897) TCGA-D3-A5GO-06 12 56231153 56231153 G A MMP19 Silent p.S398S 0.53 TCGA-D3-A5GO-06 12 56385228 56385228 C T RAB5B Silent p.L175L 0.12 TCGA-D3-A5GO-06 12 56426979 56426979 G A IKZF4 Missense_Mutation p.E291K 0.19 deleterious(0.02) benign(0.129) TCGA-D3-A5GO-06 12 56522221 56522221 G A ESYT1 Missense_Mutation p.G40S 0.33 tolerated(0.26) benign(0.004) TCGA-D3-A5GO-06 12 56561889 56561889 C T SMARCC2 Silent p.R904R 0.18 TCGA-D3-A5GO-06 12 56817587 56817587 G A TIMELESS Missense_Mutation p.L654F 0.36 deleterious(0.01) possibly_damaging(0.761) TCGA-D3-A5GO-06 12 56848293 56848293 A T MIP Silent p.A35A 0.16 TCGA-D3-A5GO-06 12 56848294 56848294 G T MIP Missense_Mutation p.A35D 0.17 deleterious(0.01) benign(0.081) TCGA-D3-A5GO-06 12 57009025 57009025 G A BAZ2A Missense_Mutation p.S170F 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 12 57112047 57112047 G A NACA Intron 0.38 TCGA-D3-A5GO-06 12 57397310 57397310 G A ZBTB39 Silent p.F464F 0.46 TCGA-D3-A5GO-06 12 57397398 57397398 G A ZBTB39 Missense_Mutation p.P435L 0.36 tolerated(0.28) probably_damaging(0.998) TCGA-D3-A5GO-06 12 57430816 57430816 C T MYO1A Silent p.Q705Q 0.27 TCGA-D3-A5GO-06 12 57569798 57569798 C T LRP1 Silent p.I1300I 0.23 TCGA-D3-A5GO-06 12 57850021 57850021 G A INHBE Missense_Mutation p.R148K 0.23 tolerated(0.88) benign(0.037) TCGA-D3-A5GO-06 12 57972099 57972099 G A KIF5A Missense_Mutation p.E838K 0.41 deleterious(0.02) benign(0.211) TCGA-D3-A5GO-06 12 58121954 58121954 C T AGAP2-AS1 3'UTR 0.19 TCGA-D3-A5GO-06 12 65857044 65857044 C T MSRB3 Missense_Mutation p.T174I 0.52 tolerated(0.17) benign(0.001) TCGA-D3-A5GO-06 12 66859151 66859151 G A GRIP1 Missense_Mutation p.P259L 0.57 tolerated(0.06) benign(0.082) TCGA-D3-A5GO-06 12 6776760 6776760 G A ZNF384 3'UTR 0.65 TCGA-D3-A5GO-06 12 69265695 69265695 G A CPM Silent p.L100L 0.55 TCGA-D3-A5GO-06 12 70932115 70932115 G A PTPRB Intron 0.33 TCGA-D3-A5GO-06 12 70980858 70980858 C T PTPRB Missense_Mutation p.R747Q 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A5GO-06 12 7172536 7172536 C T C1S Missense_Mutation p.T217I 0.27 deleterious(0.05) possibly_damaging(0.673) TCGA-D3-A5GO-06 12 72316974 72316974 C T TBC1D15 Missense_Mutation p.T689I 0.32 deleterious_low_confidence(0.01) benign(0.057) TCGA-D3-A5GO-06 12 7293876 7293876 C T CLSTN3 Silent p.L454L 0.52 TCGA-D3-A5GO-06 12 7469805 7469805 G A ACSM4 Silent p.G231G 0.60 TCGA-D3-A5GO-06 12 7470723 7470723 G A ACSM4 Missense_Mutation p.G289E 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 12 75434918 75434918 C T KCNC2 3'UTR 0.28 TCGA-D3-A5GO-06 12 75436945 75436945 T G KCNC2 Silent p.S619S 0.21 TCGA-D3-A5GO-06 12 7556302 7556302 G A CD163L1 Missense_Mutation p.P413S 0.46 tolerated(0.43) probably_damaging(0.994) TCGA-D3-A5GO-06 12 7632463 7632463 G A CD163 3'UTR 0.45 TCGA-D3-A5GO-06 12 78516124 78516124 C T NAV3 Missense_Mutation p.S1385F 0.60 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A5GO-06 12 79747315 79747315 C T SYT1 Missense_Mutation p.R282C 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A5GO-06 12 81112910 81112910 A G MYF5 3'UTR 0.67 TCGA-D3-A5GO-06 12 81283110 81283110 C T LIN7A Missense_Mutation p.E41K 0.13 tolerated(0.62) benign(0.035) TCGA-D3-A5GO-06 12 81613796 81613796 G A ACSS3 Missense_Mutation p.M485I 0.52 tolerated(0.05) benign(0.11) TCGA-D3-A5GO-06 12 81719558 81719558 T A PPFIA2 Missense_Mutation p.K880N 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A5GO-06 12 88420773 88420773 C T C12orf50 5'UTR 0.52 TCGA-D3-A5GO-06 12 91449939 91449939 G A KERA Silent p.F40F 0.21 TCGA-D3-A5GO-06 12 91552184 91552184 C T DCN Missense_Mutation p.E143K 0.30 tolerated(0.21) benign(0.04) TCGA-D3-A5GO-06 12 9309930 9309930 G A PZP Silent p.L1131L 0.36 TCGA-D3-A5GO-06 12 94562988 94562988 C T PLXNC1 Silent p.S374S 0.18 TCGA-D3-A5GO-06 12 96379864 96379864 G A HAL Missense_Mutation p.H376Y 0.52 deleterious(0.05) benign(0.012) TCGA-D3-A5GO-06 12 97137536 97137536 G A C12orf55 Missense_Mutation p.E2469K 0.47 tolerated(0.59) benign(0.022) TCGA-D3-A5GO-06 12 9717743 9717743 C T RP11-726G1.1 RNA 0.73 TCGA-D3-A5GO-06 12 98126372 98126372 G A RP11-1016B18.1 RNA 0.38 TCGA-D3-A5GO-06 13 101077939 101077939 C T PCCA Missense_Mutation p.S600L 0.43 tolerated(0.27) benign(0) TCGA-D3-A5GO-06 13 102235631 102235631 C T ITGBL1 Missense_Mutation p.H265Y 0.52 tolerated(0.26) probably_damaging(0.943) TCGA-D3-A5GO-06 13 110835395 110835395 C T COL4A1 Silent p.E680E 0.64 TCGA-D3-A5GO-06 13 113200061 113200061 G A TUBGCP3 Silent p.F429F 0.32 TCGA-D3-A5GO-06 13 113833280 113833280 C T PCID2 Missense_Mutation p.M424I 0.41 tolerated(0.07) benign(0.002) TCGA-D3-A5GO-06 13 19751676 19751676 G A TUBA3C Silent p.F149F 0.40 TCGA-D3-A5GO-06 13 20049728 20049728 G A TPTE2 Missense_Mutation p.S72L 0.26 tolerated(0.1) benign(0.056) TCGA-D3-A5GO-06 13 23905402 23905402 T C SACS Missense_Mutation p.I4205V 0.52 possibly_damaging(0.891) TCGA-D3-A5GO-06 13 23912907 23912907 G A SACS Missense_Mutation p.T1703I 0.23 benign(0.043) TCGA-D3-A5GO-06 13 24465894 24465894 C T C1QTNF9B Missense_Mutation p.G179E 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 13 26927934 26927934 C T CDK8 Missense_Mutation p.R125W 0.64 deleterious(0) possibly_damaging(0.849) TCGA-D3-A5GO-06 13 28862219 28862219 C T PAN3 Missense_Mutation p.P828L 0.48 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 13 29598914 29598914 G A MTUS2 Missense_Mutation p.E37K 0.26 deleterious(0) possibly_damaging(0.453) TCGA-D3-A5GO-06 13 30071464 30071464 G C MTUS2 Missense_Mutation p.E1233D 0.59 deleterious(0) possibly_damaging(0.848) TCGA-D3-A5GO-06 13 32355862 32355862 C T RXFP2 Silent p.C280C 0.07 TCGA-D3-A5GO-06 13 35644928 35644928 C T NBEA Missense_Mutation p.P504S 0.56 deleterious(0) probably_damaging(0.955) TCGA-D3-A5GO-06 13 36241668 36241668 G A NBEA Silent p.G2853G 0.25 TCGA-D3-A5GO-06 13 36767801 36767801 C A SOHLH2 Missense_Mutation p.M206I 0.24 tolerated(0.17) benign(0.009) TCGA-D3-A5GO-06 13 39422666 39422666 C T FREM2 Missense_Mutation p.R2080C 0.30 deleterious(0.02) possibly_damaging(0.747) TCGA-D3-A5GO-06 13 41768146 41768146 G A KBTBD7 Missense_Mutation p.S83F 0.37 tolerated(0.71) benign(0.002) TCGA-D3-A5GO-06 13 46287652 46287652 G A SPERT Silent p.K164K 0.49 TCGA-D3-A5GO-06 13 46287917 46287917 G A SPERT Missense_Mutation p.E253K 0.29 tolerated(0.39) probably_damaging(0.999) TCGA-D3-A5GO-06 13 47469826 47469826 C T HTR2A Silent p.Q72Q 0.47 TCGA-D3-A5GO-06 13 48612039 48612039 G A NUDT15 Missense_Mutation p.G53S 0.46 deleterious(0.02) benign(0.258) TCGA-D3-A5GO-06 13 49281733 49281733 C T CYSLTR2 Silent p.F260F 0.23 TCGA-D3-A5GO-06 13 52440032 52440032 G A CCDC70 Missense_Mutation p.G173E 0.26 tolerated(1) benign(0) TCGA-D3-A5GO-06 13 52598464 52598464 C T ALG11 Missense_Mutation p.P200S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 13 53282826 53282826 C T LECT1 Missense_Mutation p.E212K 0.31 tolerated(0.97) benign(0.041) TCGA-D3-A5GO-06 13 58240915 58240915 G A PCDH17 Silent p.R915R 0.41 TCGA-D3-A5GO-06 13 78130755 78130755 C T SCEL Missense_Mutation p.T23I 0.44 tolerated(0.23) benign(0.004) TCGA-D3-A5GO-06 13 78474052 78474052 G A EDNRB Missense_Mutation p.S469F 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 13 79213160 79213160 T C RNF219 Missense_Mutation p.K116R 0.54 tolerated(0.05) possibly_damaging(0.656) TCGA-D3-A5GO-06 13 79896596 79896596 G A RBM26 Missense_Mutation p.A914V 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 13 84453717 84453717 G A SLITRK1 Silent p.I642I 0.37 TCGA-D3-A5GO-06 13 84454540 84454540 G A SLITRK1 Missense_Mutation p.A368V 0.35 tolerated(0.06) benign(0.005) TCGA-D3-A5GO-06 13 84454755 84454755 C T SLITRK1 Silent p.E296E 0.31 TCGA-D3-A5GO-06 13 86368439 86368439 C T SLITRK6 Missense_Mutation p.M735I 0.43 tolerated(0.38) benign(0) TCGA-D3-A5GO-06 13 95715076 95715076 G A ABCC4 Missense_Mutation p.S1083F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 13 96085965 96085965 G A CLDN10 5'UTR 0.33 TCGA-D3-A5GO-06 13 97484989 97484989 G A HS6ST3 Missense_Mutation p.S318N 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 13 97600346 97600346 C T RP11-65L19.4 5'Flank 0.37 TCGA-D3-A5GO-06 14 104473036 104473036 G A TDRD9 Missense_Mutation p.D645N 0.82 tolerated(0.21) probably_damaging(0.957) TCGA-D3-A5GO-06 14 105406981 105406981 G A AHNAK2 Missense_Mutation p.P4936L 0.79 benign(0.041) TCGA-D3-A5GO-06 14 106204046 106204046 C T IGHG1 3'UTR 0.93 TCGA-D3-A5GO-06 14 106208531 106208531 G T IGHG1 Silent p.V123V 0.78 TCGA-D3-A5GO-06 14 106610591 106610591 C A IGHV3-15 Missense_Mutation p.G27W 0.71 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A5GO-06 14 19988164 19988164 C T POTEM 3'UTR 0.80 TCGA-D3-A5GO-06 14 20345121 20345121 G A OR4K2 Missense_Mutation p.G232E 0.63 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A5GO-06 14 20502004 20502004 T C OR4K13 Silent p.%3D 0.64 TCGA-D3-A5GO-06 14 20915369 20915369 G A OSGEP 3'UTR 0.68 TCGA-D3-A5GO-06 14 22192552 22192552 C T TRAV3 Silent p.F109F 0.94 TCGA-D3-A5GO-06 14 22265811 22265811 C T TRAV8-1 Missense_Mutation p.L32F 0.82 deleterious(0.01) benign(0.012) TCGA-D3-A5GO-06 14 23282270 23282270 C T SLC7A7 Missense_Mutation p.G113E 0.71 tolerated(0.15) benign(0.026) TCGA-D3-A5GO-06 14 23597390 23597390 G A SLC7A8 Missense_Mutation p.P427S 0.78 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 14 23896804 23896804 C T MYH7 Silent p.G626G 0.82 TCGA-D3-A5GO-06 14 23896958 23896958 G A MYH7 Missense_Mutation p.A575V 0.75 tolerated(0.06) benign(0.155) TCGA-D3-A5GO-06 14 52493941 52493941 G A NID2 Silent p.A884A 0.91 TCGA-D3-A5GO-06 14 52493942 52493942 G A NID2 Missense_Mutation p.A884V 0.91 tolerated(0.63) benign(0.005) TCGA-D3-A5GO-06 14 52734901 52734901 C T PTGDR Silent p.L123L 0.20 TCGA-D3-A5GO-06 14 60585065 60585065 C T PCNXL4 Missense_Mutation p.R299C 0.88 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 14 67567593 67567593 C T GPHN Missense_Mutation p.R420C 0.79 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 14 69347543 69347543 G A ACTN1 Missense_Mutation p.T706I 0.81 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A5GO-06 14 69704396 69704396 C T EXD2 Missense_Mutation p.S466F 0.97 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 14 70713174 70713174 C T ADAM21P1 RNA 0.65 TCGA-D3-A5GO-06 14 76964646 76964646 C T ESRRB Missense_Mutation p.H383Y 0.84 tolerated(1) benign(0.296) TCGA-D3-A5GO-06 14 77809809 77809809 C T TMED8 Missense_Mutation p.A158T 0.58 tolerated(0.06) possibly_damaging(0.754) TCGA-D3-A5GO-06 14 77809810 77809810 C T TMED8 Missense_Mutation p.M157I 0.58 tolerated(1) benign(0.002) TCGA-D3-A5GO-06 14 88729552 88729552 C T KCNK10 Silent p.L132L 0.81 TCGA-D3-A5GO-06 14 89061066 89061066 C T ZC3H14 Intron 0.70 TCGA-D3-A5GO-06 14 89202745 89202745 G A EML5 Missense_Mutation p.P338S 0.77 tolerated(0.09) possibly_damaging(0.452) TCGA-D3-A5GO-06 14 91773462 91773462 C T CCDC88C Missense_Mutation p.E1039K 0.77 tolerated(0.06) possibly_damaging(0.493) TCGA-D3-A5GO-06 14 91780201 91780201 G A CCDC88C Silent p.S653S 0.72 TCGA-D3-A5GO-06 14 91780202 91780202 G A CCDC88C Missense_Mutation p.S653F 0.72 deleterious(0) possibly_damaging(0.757) TCGA-D3-A5GO-06 14 94007025 94007025 T A UNC79 Missense_Mutation p.F281I 0.74 tolerated(0.52) benign(0.014) TCGA-D3-A5GO-06 14 94067104 94067104 C T UNC79 Missense_Mutation p.P1011S 0.76 tolerated(0.36) probably_damaging(0.999) TCGA-D3-A5GO-06 14 94754772 94754772 C T SERPINA10 Silent p.K281K 0.62 TCGA-D3-A5GO-06 14 95036024 95036024 G A SERPINA4 3'UTR 0.58 TCGA-D3-A5GO-06 14 96924450 96924450 G A AK7 Missense_Mutation p.E420K 0.71 tolerated(0.18) benign(0.219) TCGA-D3-A5GO-06 14 99182645 99182645 G A C14orf177 Silent p.G39G 0.76 TCGA-D3-A5GO-06 14 99641075 99641075 C T BCL11B Missense_Mutation p.A700T 0.69 tolerated(0.42) benign(0.053) TCGA-D3-A5GO-06 15 20489465 20489465 C T CHEK2P2 RNA 0.08 TCGA-D3-A5GO-06 15 20643923 20643923 G A HERC2P3 RNA 0.20 TCGA-D3-A5GO-06 15 22332609 22332609 C T RP11-69H14.6 RNA 0.13 TCGA-D3-A5GO-06 15 22382680 22382680 G A OR4N4 Missense_Mutation p.D70N 0.15 deleterious(0.01) possibly_damaging(0.839) TCGA-D3-A5GO-06 15 22383012 22383012 T G OR4N4 Missense_Mutation p.D180E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.08 tolerated(0.3) benign(0.009) TCGA-D3-A5GO-06 15 23889856 23889856 C T MAGEL2 Missense_Mutation p.V409M 0.58 tolerated(0.15) benign(0.004) TCGA-D3-A5GO-06 15 24921274 24921274 C T NPAP1 Missense_Mutation p.A87V 0.20 tolerated(1) possibly_damaging(0.682) TCGA-D3-A5GO-06 15 25327975 25327975 T G SNORD116-16 RNA 0.48 TCGA-D3-A5GO-06 15 25423785 25423785 G A SNORD115-6 5'Flank 0.25 TCGA-D3-A5GO-06 15 25463617 25463617 C T SNORD115-27 5'Flank 0.50 TCGA-D3-A5GO-06 15 25472080 25472080 G A SNORD115-33 5'Flank 0.40 TCGA-D3-A5GO-06 15 32460181 32460181 G A CHRNA7 Missense_Mutation p.R373Q 0.29 deleterious(0.04) probably_damaging(0.975) TCGA-D3-A5GO-06 15 34042431 34042431 G A RYR3 Silent p.R2781R 0.30 TCGA-D3-A5GO-06 15 34646853 34646853 G A NUTM1 Missense_Mutation p.E400K 0.45 deleterious(0.02) possibly_damaging(0.672) TCGA-D3-A5GO-06 15 39885304 39885304 C T THBS1 Silent p.F957F 0.39 TCGA-D3-A5GO-06 15 42379612 42379612 C T PLA2G4D Silent p.V47V 0.46 TCGA-D3-A5GO-06 15 43483811 43483811 G A CCNDBP1 Silent p.G266G 0.24 TCGA-D3-A5GO-06 15 43696745 43696745 G A TUBGCP4 Silent p.L661L 0.28 TCGA-D3-A5GO-06 15 44093869 44093869 T C HYPK Intron 0.39 TCGA-D3-A5GO-06 15 45965857 45965857 C T SQRDL Missense_Mutation p.S171L 0.27 deleterious(0.04) benign(0.4) TCGA-D3-A5GO-06 15 48446052 48446052 C T MYEF2 Missense_Mutation p.G342R 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A5GO-06 15 48766501 48766501 G A FBN1 Silent p.Y1387Y 0.21 TCGA-D3-A5GO-06 15 48807693 48807693 G A FBN1 Silent p.C453C 0.54 TCGA-D3-A5GO-06 15 50209163 50209163 C T ATP8B4 Silent p.G703G 0.15 TCGA-D3-A5GO-06 15 50336869 50336869 G A ATP8B4 Silent p.S74S 0.38 TCGA-D3-A5GO-06 15 50535074 50535074 C T HDC Missense_Mutation p.D458N 0.51 tolerated(0.1) benign(0.005) TCGA-D3-A5GO-06 15 51350462 51350462 G A TNFAIP8L3 Silent p.I165I 0.23 TCGA-D3-A5GO-06 15 51981545 51981545 G A SCG3 Missense_Mutation p.G224R 0.54 deleterious_low_confidence(0.04) possibly_damaging(0.906) TCGA-D3-A5GO-06 15 51988145 51988145 G A SCG3 Silent p.V314V 0.24 TCGA-D3-A5GO-06 15 52339121 52339121 C T MAPK6 Missense_Mutation p.P155L 0.48 deleterious(0.01) possibly_damaging(0.574) TCGA-D3-A5GO-06 15 58285269 58285269 C T ALDH1A2 Nonsense_Mutation p.W186* 0.29 TCGA-D3-A5GO-06 15 64448781 64448781 T C SNX22 3'UTR 0.24 TCGA-D3-A5GO-06 15 64791923 64791923 C T ZNF609 Missense_Mutation p.P102L 0.29 tolerated(0.08) benign(0.006) TCGA-D3-A5GO-06 15 65680892 65680892 C T IGDCC4 Missense_Mutation p.E914K 0.23 tolerated(0.17) possibly_damaging(0.876) TCGA-D3-A5GO-06 15 68987559 68987559 C T CORO2B Silent p.I99I 0.21 TCGA-D3-A5GO-06 15 71124999 71124999 G A LARP6 Silent p.L290L 0.23 TCGA-D3-A5GO-06 15 72172100 72172100 G A MYO9A Missense_Mutation p.R1901W 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 15 72958376 72958376 G A GOLGA6B Missense_Mutation p.G621S 0.17 tolerated(0.78) probably_damaging(0.994) TCGA-D3-A5GO-06 15 74219703 74219703 C T LOXL1 Silent p.P193P 0.47 TCGA-D3-A5GO-06 15 74467458 74467458 C T ISLR Missense_Mutation p.R87C 0.53 tolerated(0.18) probably_damaging(0.98) TCGA-D3-A5GO-06 15 74573043 74573043 C T CCDC33 Silent p.P308P 0.26 TCGA-D3-A5GO-06 15 74574143 74574143 G A CCDC33 Missense_Mutation p.D350N 0.58 deleterious(0.04) benign(0.004) TCGA-D3-A5GO-06 15 74627332 74627332 G A CCDC33 Missense_Mutation p.R681Q 0.27 deleterious(0.02) probably_damaging(0.947) TCGA-D3-A5GO-06 15 74742405 74742405 A C UBL7 Missense_Mutation p.V179G 0.31 deleterious(0) benign(0.226) TCGA-D3-A5GO-06 15 74964078 74964078 G A EDC3 Missense_Mutation p.P68S 0.53 tolerated(0.25) benign(0.026) TCGA-D3-A5GO-06 15 75044515 75044515 C T CYP1A2 Silent p.L365L 0.25 TCGA-D3-A5GO-06 15 75801285 75801285 G A PTPN9 Silent p.L204L 0.29 TCGA-D3-A5GO-06 15 77020967 77020967 C T SCAPER Missense_Mutation p.A712T 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 15 77224705 77224705 G A RCN2 Missense_Mutation p.D50N 0.24 tolerated(0.1) benign(0.064) TCGA-D3-A5GO-06 15 78213778 78213778 G A RP11-114H24.7 Intron 0.18 TCGA-D3-A5GO-06 15 80806740 80806740 C T ARNT2 Missense_Mutation p.P291S 0.54 deleterious(0.02) possibly_damaging(0.641) TCGA-D3-A5GO-06 15 83333685 83333685 C T AP3B2 Nonsense_Mutation p.W661* 0.40 TCGA-D3-A5GO-06 15 83395821 83395821 G A AC105339.2 5'Flank 0.67 TCGA-D3-A5GO-06 15 83674328 83674328 G T C15orf40 Intron 0.44 TCGA-D3-A5GO-06 15 84611351 84611351 G A ADAMTSL3 Nonsense_Mutation p.W707* 0.50 TCGA-D3-A5GO-06 15 85400580 85400580 C T ALPK3 Missense_Mutation p.P1073S 0.33 tolerated_low_confidence(0.11) benign(0.09) TCGA-D3-A5GO-06 15 86261363 86261363 G A AKAP13 Missense_Mutation p.V1996M 0.16 deleterious(0.03) probably_damaging(0.935) TCGA-D3-A5GO-06 15 86261364 86261364 T A AKAP13 Missense_Mutation p.V1996E 0.16 tolerated(0.06) possibly_damaging(0.629) TCGA-D3-A5GO-06 15 86286971 86286971 C A AKAP13 Silent p.A2773A 0.57 TCGA-D3-A5GO-06 15 88423503 88423503 C T NTRK3 Missense_Mutation p.E778K 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 15 89401560 89401560 G A ACAN Missense_Mutation p.S1915N 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A5GO-06 15 90144983 90144983 C T TICRR Silent p.I781I 0.31 TCGA-D3-A5GO-06 15 90280911 90280911 G A WDR93 Nonsense_Mutation p.W572* 0.56 TCGA-D3-A5GO-06 15 90892258 90892258 C T GABARAPL3 Missense_Mutation p.G58S 0.55 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 15 91421520 91421520 C T FURIN Missense_Mutation p.R276C 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A5GO-06 15 96877562 96877562 C T NR2F2 Missense_Mutation p.P234S 0.40 tolerated(0.15) probably_damaging(0.982) TCGA-D3-A5GO-06 15 97328450 97328450 G A SPATA8 3'UTR 0.64 TCGA-D3-A5GO-06 16 10274182 10274182 C T GRIN2A Silent p.K29K 0.40 TCGA-D3-A5GO-06 16 11114054 11114054 C T CLEC16A Silent p.I436I 0.44 TCGA-D3-A5GO-06 16 11348858 11348858 G A SOCS1 Missense_Mutation p.R160C 0.23 deleterious(0) possibly_damaging(0.719) TCGA-D3-A5GO-06 16 11348859 11348859 G A SOCS1 Silent p.R159R 0.23 TCGA-D3-A5GO-06 16 11363159 11363159 C T TNP2 5'UTR 0.38 TCGA-D3-A5GO-06 16 11785402 11785402 G A TXNDC11 Silent p.S548S 0.42 TCGA-D3-A5GO-06 16 1268386 1268386 G A CACNA1H Silent p.A1874A 0.40 TCGA-D3-A5GO-06 16 1507320 1507320 A G CLCN7 Missense_Mutation p.S253P 0.53 deleterious(0.05) possibly_damaging(0.568) TCGA-D3-A5GO-06 16 15815413 15815413 C T MYH11 Missense_Mutation p.E1489K 0.42 probably_damaging(0.998) TCGA-D3-A5GO-06 16 16200609 16200609 C T ABCC1 Missense_Mutation p.S917F 0.24 deleterious(0.05) benign(0.299) TCGA-D3-A5GO-06 16 18845580 18845580 G A SMG1 Silent p.P2837P 0.38 TCGA-D3-A5GO-06 16 1997207 1997207 G A RPL3L Nonsense_Mutation p.R226* 0.42 TCGA-D3-A5GO-06 16 2049618 2049618 C T ZNF598 Silent p.R644R 0.37 TCGA-D3-A5GO-06 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.94 tolerated(0.09) benign(0.052) TCGA-D3-A5GO-06 16 20966216 20966216 C T DNAH3 Missense_Mutation p.A3664T 0.45 tolerated(0.22) benign(0.016) TCGA-D3-A5GO-06 16 23221074 23221074 G A SCNN1G Missense_Mutation p.E361K 0.35 tolerated(0.51) possibly_damaging(0.685) TCGA-D3-A5GO-06 16 2871029 2871029 C T PRSS21 Silent p.F208F 0.38 TCGA-D3-A5GO-06 16 28847497 28847497 C T ATXN2L Silent p.L1047L 0.42 TCGA-D3-A5GO-06 16 29907160 29907160 G A SEZ6L2 Missense_Mutation p.S178F 0.34 deleterious(0.02) benign(0.275) TCGA-D3-A5GO-06 16 30012803 30012803 C T INO80E Silent p.P155P 0.50 TCGA-D3-A5GO-06 16 30536228 30536228 G A ZNF768 Silent p.S411S 0.22 TCGA-D3-A5GO-06 16 30536878 30536878 G A ZNF768 Silent p.L195L 0.43 TCGA-D3-A5GO-06 16 30537042 30537062 GGGCTCCGGGGTTCATACCCG - ZNF768 In_Frame_Del p.P137_E143del 0.35 TCGA-D3-A5GO-06 16 30721365 30721365 C T SRCAP Silent p.P350P 0.48 TCGA-D3-A5GO-06 16 30748522 30748522 C T SRCAP Silent p.A2387A 0.39 TCGA-D3-A5GO-06 16 30748969 30748969 C T SRCAP Silent p.I2536I 0.40 TCGA-D3-A5GO-06 16 30997780 30997780 G A HSD3B7 Missense_Mutation p.G120E 0.37 deleterious(0) possibly_damaging(0.768) TCGA-D3-A5GO-06 16 3100083 3100083 C T MMP25 Silent p.V102V 0.37 TCGA-D3-A5GO-06 16 31198144 31198144 C T FUS Silent p.F262F 0.48 TCGA-D3-A5GO-06 16 31286951 31286951 C T ITGAM Nonsense_Mutation p.Q314* 0.29 TCGA-D3-A5GO-06 16 3139413 3139413 G A ZSCAN10 Silent p.S619S 0.35 TCGA-D3-A5GO-06 16 3140012 3140012 C T ZSCAN10 Missense_Mutation p.D420N 0.25 tolerated(0.44) benign(0.019) TCGA-D3-A5GO-06 16 31422716 31422716 G A ITGAD Missense_Mutation p.D529N 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A5GO-06 16 31498667 31498667 G A SLC5A2 Missense_Mutation p.D201N 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 16 319584 319584 C T RGS11 Missense_Mutation p.D403N 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 16 33020712 33020712 C T IGHV3OR16-8 Silent p.S40S 0.39 TCGA-D3-A5GO-06 16 4310150 4310150 G A TFAP4 Missense_Mutation p.P255S 0.45 tolerated(0.06) unknown(0) TCGA-D3-A5GO-06 16 47143405 47143405 G A NETO2 Missense_Mutation p.S291F 0.37 tolerated(0.07) benign(0.064) TCGA-D3-A5GO-06 16 47143407 47143407 A G NETO2 Silent p.T290T 0.37 TCGA-D3-A5GO-06 16 48201473 48201473 G A ABCC11 Silent p.L1330L 0.44 TCGA-D3-A5GO-06 16 48201559 48201559 C T ABCC11 Missense_Mutation p.D1302N 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 16 49407822 49407822 C T C16orf78 5'UTR 0.49 TCGA-D3-A5GO-06 16 53674976 53674976 G A RPGRIP1L Missense_Mutation p.S976F 0.25 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GO-06 16 55862781 55862781 C T CES1 Missense_Mutation p.G53E 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 16 56670343 56670343 C T MT1M 3'Flank 0.28 TCGA-D3-A5GO-06 16 61687748 61687748 C T CDH8 Missense_Mutation p.D722N 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-D3-A5GO-06 16 61935302 61935302 G A CDH8 Nonsense_Mutation p.Q110* 0.47 TCGA-D3-A5GO-06 16 640424 640424 T C RAB40C Missense_Mutation p.Y45H 0.25 tolerated(0.55) possibly_damaging(0.478) TCGA-D3-A5GO-06 16 66586484 66586484 G A CKLF 5'UTR 0.17 TCGA-D3-A5GO-06 16 66946460 66946460 C T CDH16 Missense_Mutation p.E436K 0.48 tolerated(0.14) benign(0.166) TCGA-D3-A5GO-06 16 66997451 66997451 G A CES3 Silent p.Q115Q 0.29 TCGA-D3-A5GO-06 16 67913599 67913599 C T EDC4 Silent p.F581F 0.42 TCGA-D3-A5GO-06 16 68021324 68021324 G A DPEP2 3'UTR 0.43 TCGA-D3-A5GO-06 16 68289196 68289196 C T PLA2G15 Missense_Mutation p.H139Y 0.43 tolerated(0.34) benign(0.005) TCGA-D3-A5GO-06 16 70575569 70575569 C T SF3B3 Intron 0.17 TCGA-D3-A5GO-06 16 70871596 70871596 C T HYDIN Missense_Mutation p.M4413I 0.33 benign(0.216) TCGA-D3-A5GO-06 16 70889137 70889137 C T HYDIN Missense_Mutation p.E4113K 0.31 possibly_damaging(0.801) TCGA-D3-A5GO-06 16 70897082 70897082 G A HYDIN Silent p.F3825F 0.32 TCGA-D3-A5GO-06 16 70929897 70929897 G A HYDIN Silent p.I3045I 0.31 TCGA-D3-A5GO-06 16 70986510 70986510 G A HYDIN Silent p.V2115V 0.31 TCGA-D3-A5GO-06 16 71065688 71065688 C T HYDIN Missense_Mutation p.E888K 0.43 probably_damaging(0.969) TCGA-D3-A5GO-06 16 720770 720770 C T RHOT2 Silent p.F212F 0.38 TCGA-D3-A5GO-06 16 77401558 77401558 G A ADAMTS18 Silent p.A186A 0.41 TCGA-D3-A5GO-06 16 81074951 81074951 C T ATMIN Intron 0.40 TCGA-D3-A5GO-06 16 81965259 81965259 G A PLCG2 Silent p.K913K 0.34 TCGA-D3-A5GO-06 16 83520158 83520158 C T CDH13 Silent p.I333I 0.48 TCGA-D3-A5GO-06 16 84940205 84940205 C T CRISPLD2 Missense_Mutation p.P484L 0.28 deleterious(0) benign(0.026) TCGA-D3-A5GO-06 16 87938468 87938468 T A CA5A Missense_Mutation p.Q128L 0.41 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GO-06 16 88705706 88705706 C T IL17C Silent p.P108P 0.24 TCGA-D3-A5GO-06 16 90076441 90076441 C T DBNDD1 Nonsense_Mutation p.W5* 0.32 TCGA-D3-A5GO-06 17 10247326 10247326 G A MYH13 Missense_Mutation p.S562F 0.72 deleterious(0) possibly_damaging(0.864) TCGA-D3-A5GO-06 17 10355552 10355552 C T MYH4 Silent p.E1148E 0.70 TCGA-D3-A5GO-06 17 10358351 10358351 C T MYH4 Missense_Mutation p.R781Q 0.69 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 17 10429959 10429959 C T MYH2 Missense_Mutation p.E1382K 0.65 deleterious(0) benign(0.323) TCGA-D3-A5GO-06 17 10430366 10430366 A G MYH2 Silent p.F1293F 0.63 TCGA-D3-A5GO-06 17 12626276 12626276 G A MYOCD Silent p.V122V 0.67 TCGA-D3-A5GO-06 17 12888210 12888210 G A ARHGAP44 Missense_Mutation p.E768K 0.58 deleterious_low_confidence(0) benign(0.081) TCGA-D3-A5GO-06 17 13972805 13972805 G A COX10 5'Flank 0.40 TCGA-D3-A5GO-06 17 17409590 17409590 G A PEMT Silent p.L202L 0.90 TCGA-D3-A5GO-06 17 17701157 17701157 C T RAI1 Missense_Mutation p.S1632F 0.58 deleterious(0.02) possibly_damaging(0.553) TCGA-D3-A5GO-06 17 18181326 18181326 G A TOP3A Silent p.N830N 0.73 TCGA-D3-A5GO-06 17 18923082 18923082 G A SLC5A10 Silent p.L505L 0.84 TCGA-D3-A5GO-06 17 19318512 19318512 G A RNF112 Missense_Mutation p.E430K 0.64 tolerated(0.59) benign(0.093) TCGA-D3-A5GO-06 17 2276740 2276740 C T SGSM2 Missense_Mutation p.S678F 0.70 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GO-06 17 27001622 27001622 C T SUPT6H Silent p.V112V 0.40 TCGA-D3-A5GO-06 17 27946683 27946683 C T CORO6 Missense_Mutation p.D103N 0.40 deleterious(0) probably_damaging(0.982) TCGA-D3-A5GO-06 17 28598321 28598321 G A BLMH Missense_Mutation p.H372Y 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 17 2911389 2911389 G A RAP1GAP2 Missense_Mutation p.E482K 0.54 deleterious(0.03) possibly_damaging(0.805) TCGA-D3-A5GO-06 17 2996169 2996169 C T OR1D2 Missense_Mutation p.G41E 0.64 deleterious(0.01) benign(0.125) TCGA-D3-A5GO-06 17 3119592 3119592 G A OR1A1 Silent p.Q226Q 0.64 TCGA-D3-A5GO-06 17 31266526 31266526 C T TMEM98 Missense_Mutation p.P149S 0.33 deleterious(0.04) unknown(0) TCGA-D3-A5GO-06 17 31351000 31351000 G A ASIC2 Missense_Mutation p.L410F 0.42 tolerated(0.15) benign(0.017) TCGA-D3-A5GO-06 17 3336433 3336433 G A OR1E2 Missense_Mutation p.L235F 0.57 deleterious(0.04) benign(0.424) TCGA-D3-A5GO-06 17 33466921 33466921 G A NLE1 Silent p.S109S 0.29 TCGA-D3-A5GO-06 17 35634798 35634798 G A ACACA Silent p.I237I 0.38 TCGA-D3-A5GO-06 17 35902229 35902229 G A SYNRG Missense_Mutation p.T1016I 0.36 deleterious_low_confidence(0.03) benign(0.353) TCGA-D3-A5GO-06 17 35978400 35978400 G A DDX52 Missense_Mutation p.P560L 0.28 deleterious(0.01) possibly_damaging(0.689) TCGA-D3-A5GO-06 17 36489278 36489278 G A GPR179 Silent p.F631F 0.41 TCGA-D3-A5GO-06 17 37420601 37420601 G A FBXL20 Missense_Mutation p.R344C 0.37 deleterious(0.04) benign(0.083) TCGA-D3-A5GO-06 17 37650905 37650905 G T CDK12 Missense_Mutation p.V793F 0.25 probably_damaging(0.999) TCGA-D3-A5GO-06 17 37817337 37817337 C T STARD3 Missense_Mutation p.R380W 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 17 37922178 37922178 C T IKZF3 Silent p.V465V 0.30 TCGA-D3-A5GO-06 17 38955946 38955946 C T KRT28 Missense_Mutation p.G67E 0.16 deleterious(0) possibly_damaging(0.835) TCGA-D3-A5GO-06 17 39535397 39535397 C T KRT34 Missense_Mutation p.S345N 0.29 deleterious(0) benign(0.013) TCGA-D3-A5GO-06 17 39538602 39538602 G A KRT34 Missense_Mutation p.P8L 0.34 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-D3-A5GO-06 17 39661453 39661453 G A KRT13 Missense_Mutation p.S117F 0.43 deleterious(0) probably_damaging(0.968) TCGA-D3-A5GO-06 17 39684155 39684155 C T KRT19 Nonsense_Mutation p.W115* 0.38 TCGA-D3-A5GO-06 17 41004743 41004743 C T AOC3 Silent p.V461V 0.32 TCGA-D3-A5GO-06 17 42745073 42745073 G A C17orf104 Silent p.G598G 0.37 TCGA-D3-A5GO-06 17 43923502 43923502 C T SPPL2C Silent p.G410G 0.38 TCGA-D3-A5GO-06 17 44067305 44067305 C T MAPT Missense_Mutation p.P415L 0.37 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GO-06 17 4496433 4496433 G A SMTNL2 Missense_Mutation p.E233K 0.74 tolerated(0.4) benign(0.154) TCGA-D3-A5GO-06 17 45456607 45456607 C T EFCAB13 Missense_Mutation p.P524S 0.37 tolerated(0.36) benign(0.057) TCGA-D3-A5GO-06 17 45917580 45917580 G A SCRN2 Silent p.A111A 0.45 TCGA-D3-A5GO-06 17 46627775 46627775 G A HOXB3 Missense_Mutation p.T406I 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GO-06 17 46925443 46925443 C T CALCOCO2 Silent p.T90T 0.45 TCGA-D3-A5GO-06 17 47000226 47000226 C T UBE2Z Missense_Mutation p.S274F 0.47 deleterious(0.01) possibly_damaging(0.83) TCGA-D3-A5GO-06 17 47376064 47376064 G A ZNF652 Missense_Mutation p.S511F 0.29 deleterious(0.04) benign(0.109) TCGA-D3-A5GO-06 17 48450550 48450550 C T MRPL27 5'UTR 0.24 TCGA-D3-A5GO-06 17 4893552 4893552 C T INCA1 Missense_Mutation p.R18K 0.69 tolerated(0.17) benign(0.131) TCGA-D3-A5GO-06 17 49710905 49710905 G A CA10 Missense_Mutation p.T299I 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 17 5050466 5050466 C T USP6 Missense_Mutation p.S803L 0.64 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-D3-A5GO-06 17 5087258 5087258 G A ZNF594 Silent p.S98S 0.79 TCGA-D3-A5GO-06 17 5359380 5359380 G A DHX33 Silent p.V324V 0.70 TCGA-D3-A5GO-06 17 5364307 5364307 C T DHX33 Silent p.Q267Q 0.77 TCGA-D3-A5GO-06 17 53853486 53853486 C T PCTP 3'UTR 0.46 TCGA-D3-A5GO-06 17 56272394 56272394 C T EPX Missense_Mutation p.L222F 0.44 tolerated(0.07) possibly_damaging(0.847) TCGA-D3-A5GO-06 17 56699100 56699100 G A TEX14 Silent p.I155I 0.40 TCGA-D3-A5GO-06 17 57287389 57287389 G A SMG8 5'UTR 0.34 TCGA-D3-A5GO-06 17 57287390 57287390 G A SMG8 5'UTR 0.33 TCGA-D3-A5GO-06 17 58332545 58332545 G A USP32 Silent p.L355L 0.40 TCGA-D3-A5GO-06 17 59147462 59147462 C T BCAS3 Intron 0.41 TCGA-D3-A5GO-06 17 59560340 59560340 C T TBX4 Silent p.F367F 0.37 TCGA-D3-A5GO-06 17 60040271 60040271 G A MED13 Missense_Mutation p.P1636S 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A5GO-06 17 60802406 60802406 C T MARCH10 Missense_Mutation p.G666E 0.44 deleterious(0.04) probably_damaging(1) TCGA-D3-A5GO-06 17 61988575 61988575 C T CSHL1 5'Flank 0.50 TCGA-D3-A5GO-06 17 62018565 62018565 C T SCN4A Missense_Mutation p.E1693K 0.41 deleterious(0.01) possibly_damaging(0.454) TCGA-D3-A5GO-06 17 62750764 62750764 G A hsa-mir-6080 RNA 0.38 TCGA-D3-A5GO-06 17 62865265 62865265 G A LRRC37A3 Silent p.L976L 0.37 TCGA-D3-A5GO-06 17 63149575 63149575 G A RGS9 Silent p.E31E 0.33 TCGA-D3-A5GO-06 17 67144894 67144894 G A ABCA10 3'UTR 0.43 TCGA-D3-A5GO-06 17 685745 685745 C T RNMTL1 Missense_Mutation p.P43S 0.63 deleterious(0.05) probably_damaging(0.971) TCGA-D3-A5GO-06 17 6904888 6904888 G A AC027763.2 Intron 0.71 TCGA-D3-A5GO-06 17 6930341 6930341 C T BCL6B Missense_Mutation p.R420C 0.70 deleterious(0) benign(0.024) TCGA-D3-A5GO-06 17 7077262 7077264 GGG - ASGR1 Intron 0.62 TCGA-D3-A5GO-06 17 72436587 72436587 C T GPRC5C Silent p.F269F 0.20 TCGA-D3-A5GO-06 17 74392713 74392713 G A UBE2O Missense_Mutation p.P769S 0.43 tolerated(0.59) benign(0.012) TCGA-D3-A5GO-06 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.79 deleterious(0.04) possibly_damaging(0.83) TCGA-D3-A5GO-06 17 76482354 76482354 G A DNAH17 Silent p.F2337F 0.64 TCGA-D3-A5GO-06 17 76501379 76501379 C T DNAH17 Missense_Mutation p.G1647E 0.37 probably_damaging(0.996) TCGA-D3-A5GO-06 17 77808568 77808568 G A CBX4 Silent p.S291S 0.32 TCGA-D3-A5GO-06 17 78082400 78082400 C T GAA Silent p.F396F 0.37 TCGA-D3-A5GO-06 17 79632342 79632342 G A OXLD1 Silent p.F111F 0.34 TCGA-D3-A5GO-06 17 79872342 79872342 G A SIRT7 Missense_Mutation p.A215V 0.24 deleterious(0) probably_damaging(0.944) TCGA-D3-A5GO-06 17 80085758 80085758 G A CCDC57 Silent p.T792T 0.53 TCGA-D3-A5GO-06 17 80319917 80319917 C T TEX19 5'UTR 0.14 TCGA-D3-A5GO-06 17 9536284 9536284 C T WDR16 Silent p.I418I 0.68 TCGA-D3-A5GO-06 18 21053520 21053520 C T RIOK3 Missense_Mutation p.R315C 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 18 21494816 21494816 G A LAMA3 Missense_Mutation p.D2546N 0.52 benign(0.075) TCGA-D3-A5GO-06 18 28577002 28577002 C T DSC3 Missense_Mutation p.G750R 0.16 tolerated(0.62) possibly_damaging(0.747) TCGA-D3-A5GO-06 18 28659859 28659859 G A DSC2 Silent p.T539T 0.35 TCGA-D3-A5GO-06 18 28671027 28671027 T A DSC2 Missense_Mutation p.E146D 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 18 28926124 28926124 G A DSG1 Missense_Mutation p.G688D 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A5GO-06 18 29111072 29111072 G A DSG2 Silent p.V379V 0.29 TCGA-D3-A5GO-06 18 29122620 29122620 G A DSG2 Silent p.E713E 0.37 TCGA-D3-A5GO-06 18 29126062 29126062 G A DSG2 Missense_Mutation p.E905K 0.37 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A5GO-06 18 29339842 29339842 C T SLC25A52 Silent p.R271R 0.24 TCGA-D3-A5GO-06 18 30092869 30092869 G A WBP11P1 RNA 0.50 TCGA-D3-A5GO-06 18 31251711 31251711 G A ASXL3 Missense_Mutation p.G199E 0.45 probably_damaging(1) TCGA-D3-A5GO-06 18 32949320 32949320 G C ZNF396 Missense_Mutation p.S289R 0.38 deleterious(0.02) possibly_damaging(0.883) TCGA-D3-A5GO-06 18 34850768 34850768 C T CELF4 Silent p.A354A 0.27 TCGA-D3-A5GO-06 18 43219721 43219721 C T SLC14A2 Missense_Mutation p.A285V 0.49 deleterious(0.01) benign(0.03) TCGA-D3-A5GO-06 18 43219782 43219782 C T SLC14A2 Silent p.F305F 0.42 TCGA-D3-A5GO-06 18 43329747 43329747 G A SLC14A1 Missense_Mutation p.G390E 0.37 deleterious(0) possibly_damaging(0.899) TCGA-D3-A5GO-06 18 44559838 44559838 C T TCEB3B Missense_Mutation p.E600K 0.34 tolerated(0.06) probably_damaging(0.936) TCGA-D3-A5GO-06 18 44561695 44561695 C T TCEB3B 5'UTR 0.18 TCGA-D3-A5GO-06 18 46146020 46146020 C T CTIF Silent p.I28I 0.23 TCGA-D3-A5GO-06 18 46287844 46287844 C T CTIF Silent p.N387N 0.34 TCGA-D3-A5GO-06 18 47480802 47480802 G A MYO5B Missense_Mutation p.P517S 0.35 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A5GO-06 18 47480803 47480803 G A MYO5B Silent p.V516V 0.34 TCGA-D3-A5GO-06 18 48255617 48255617 C T MAPK4 Missense_Mutation p.S386L 0.47 deleterious_low_confidence(0) benign(0.148) TCGA-D3-A5GO-06 18 48256234 48256234 G A MAPK4 3'UTR 0.27 TCGA-D3-A5GO-06 18 50278490 50278490 G A DCC Missense_Mutation p.R53Q 0.48 tolerated(0.07) benign(0.01) TCGA-D3-A5GO-06 18 50832017 50832017 C T DCC Nonsense_Mutation p.R661* 0.38 TCGA-D3-A5GO-06 18 50866095 50866095 C T DCC Missense_Mutation p.P726L 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 18 50918051 50918051 C T DCC Missense_Mutation p.P828S 0.14 tolerated(0.1) benign(0.017) TCGA-D3-A5GO-06 18 55020238 55020238 T C ST8SIA3 Missense_Mutation p.M54T 0.42 benign(0.138) TCGA-D3-A5GO-06 18 55104091 55104091 C T ONECUT2 Silent p.L381L 0.30 TCGA-D3-A5GO-06 18 56202404 56202404 G A ALPK2 Missense_Mutation p.P1672L 0.35 tolerated(0.25) benign(0.021) TCGA-D3-A5GO-06 18 56202405 56202405 G A ALPK2 Missense_Mutation p.P1672S 0.34 tolerated(0.14) benign(0.22) TCGA-D3-A5GO-06 18 56586314 56586314 C T ZNF532 Silent p.S265S 0.47 TCGA-D3-A5GO-06 18 59483443 59483443 G A RNF152 Missense_Mutation p.S85F 0.40 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A5GO-06 18 61233847 61233847 G A SERPINB12 Missense_Mutation p.R274K 0.46 tolerated(1) benign(0.006) TCGA-D3-A5GO-06 18 61262319 61262319 C T SERPINB13 Silent p.F224F 0.31 TCGA-D3-A5GO-06 18 61304856 61304856 G A SERPINB4 3'UTR 0.25 TCGA-D3-A5GO-06 18 61326681 61326681 C T SERPINB3 Silent p.L101L 0.42 TCGA-D3-A5GO-06 18 61587099 61587099 C T SERPINB10 Silent p.I150I 0.38 TCGA-D3-A5GO-06 18 63548003 63548003 C T CDH7 Missense_Mutation p.S744L 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 18 64235727 64235727 G A CDH19 Missense_Mutation p.S139L 0.38 tolerated(0.08) benign(0.011) TCGA-D3-A5GO-06 18 65179567 65179567 C A DSEL Missense_Mutation p.R770I 0.43 tolerated(0.17) benign(0.051) TCGA-D3-A5GO-06 18 66506047 66506047 G A CCDC102B Silent p.T237T 0.35 TCGA-D3-A5GO-06 18 66564554 66564554 G A CCDC102B Silent p.K384K 0.45 TCGA-D3-A5GO-06 18 66564557 66564557 C T CCDC102B Silent p.I385I 0.44 TCGA-D3-A5GO-06 18 70205951 70205951 C T CBLN2 Silent p.P138P 0.38 TCGA-D3-A5GO-06 18 7036045 7036045 C T LAMA1 Missense_Mutation p.D594N 0.32 deleterious(0.05) benign(0.192) TCGA-D3-A5GO-06 18 72998696 72998696 C T TSHZ1 Missense_Mutation p.T400I 0.39 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GO-06 18 72999232 72999232 C T TSHZ1 Missense_Mutation p.P579S 0.45 tolerated(0.07) possibly_damaging(0.698) TCGA-D3-A5GO-06 18 9122581 9122581 G A NDUFV2 Missense_Mutation p.R124Q 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GO-06 18 9258556 9258556 C T ANKRD12 Missense_Mutation p.S1764F 0.43 deleterious(0.02) benign(0.008) TCGA-D3-A5GO-06 19 1068708 1068708 G A HMHA1 Missense_Mutation p.G145D 0.42 tolerated(0.08) possibly_damaging(0.568) TCGA-D3-A5GO-06 19 10747058 10747058 C T SLC44A2 Silent p.F431F 0.50 TCGA-D3-A5GO-06 19 10795192 10795192 C T ILF3 Intron 0.45 TCGA-D3-A5GO-06 19 11362811 11362811 G A DOCK6 Missense_Mutation p.S164F 0.45 tolerated(0.24) benign(0.057) TCGA-D3-A5GO-06 19 11470529 11470529 C T DKFZP761J1410 Silent p.F71F 0.35 TCGA-D3-A5GO-06 19 12383811 12383811 G A ZNF44 Missense_Mutation p.P468L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 19 12692189 12692189 G A ZNF490 Missense_Mutation p.L234F 0.21 tolerated(0.71) benign(0.045) TCGA-D3-A5GO-06 19 13008525 13008525 C T GCDH Missense_Mutation p.P364L 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A5GO-06 19 13035926 13035926 G A FARSA Nonsense_Mutation p.Q302* 0.44 TCGA-D3-A5GO-06 19 13044515 13044515 C T FARSA 5'UTR 0.50 TCGA-D3-A5GO-06 19 14557315 14557315 C T PKN1 Silent p.L190L 0.19 TCGA-D3-A5GO-06 19 15770125 15770125 C T CYP4F3 Missense_Mutation p.P498L 0.34 deleterious(0) possibly_damaging(0.497) TCGA-D3-A5GO-06 19 15989651 15989651 G A CYP4F2 Missense_Mutation p.P498L 0.06 deleterious(0) possibly_damaging(0.633) TCGA-D3-A5GO-06 19 16032917 16032917 C T CYP4F11 Missense_Mutation p.E349K 0.44 deleterious(0.01) benign(0.35) TCGA-D3-A5GO-06 19 16275658 16275658 C T CIB3 Missense_Mutation p.G138E 0.39 tolerated(1) possibly_damaging(0.744) TCGA-D3-A5GO-06 19 17753740 17753740 C T UNC13A Missense_Mutation p.G796S 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 19 17950420 17950420 C T JAK3 Missense_Mutation p.G436E 0.29 deleterious(0.05) possibly_damaging(0.835) TCGA-D3-A5GO-06 19 18333048 18333048 G A PDE4C Missense_Mutation p.P110S 0.55 tolerated_low_confidence(0.71) benign(0.004) TCGA-D3-A5GO-06 19 20044767 20044767 C T ZNF93 Missense_Mutation p.H335Y 0.33 deleterious(0) probably_damaging(0.975) TCGA-D3-A5GO-06 19 21476108 21476108 G A ZNF708 Missense_Mutation p.H554Y 0.27 tolerated(0.07) benign(0.008) TCGA-D3-A5GO-06 19 22156665 22156665 G A ZNF208 Missense_Mutation p.H391Y 0.67 deleterious(0) probably_damaging(0.983) TCGA-D3-A5GO-06 19 22363199 22363199 C T ZNF676 Silent p.K440K 0.42 TCGA-D3-A5GO-06 19 2291206 2291206 G A LINGO3 Silent p.S190S 0.57 TCGA-D3-A5GO-06 19 2291207 2291207 G A LINGO3 Missense_Mutation p.S190F 0.57 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GO-06 19 22951111 22951111 G A ZNF99 Silent p.P74P 0.29 TCGA-D3-A5GO-06 19 23328171 23328171 G A ZNF730 Missense_Mutation p.E109K 0.31 tolerated(0.22) benign(0.014) TCGA-D3-A5GO-06 19 24010559 24010559 C T RPSAP58 Missense_Mutation p.P199L 0.46 tolerated(0.17) benign(0.039) TCGA-D3-A5GO-06 19 2408441 2408441 C T TMPRSS9 Silent p.V276V 0.49 TCGA-D3-A5GO-06 19 2733091 2733091 G A SLC39A3 Silent p.F201F 0.40 TCGA-D3-A5GO-06 19 30936114 30936114 G A ZNF536 Missense_Mutation p.E549K 0.42 tolerated(0.06) benign(0.169) TCGA-D3-A5GO-06 19 31039446 31039446 G A ZNF536 Missense_Mutation p.E974K 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GO-06 19 32944126 32944126 C T DPY19L3 Missense_Mutation p.L311F 0.29 deleterious(0) possibly_damaging(0.742) TCGA-D3-A5GO-06 19 33457303 33457303 G A CEP89 Missense_Mutation p.P37S 0.41 deleterious(0.02) possibly_damaging(0.877) TCGA-D3-A5GO-06 19 35719060 35719060 G A FAM187B Missense_Mutation p.A175V 0.25 deleterious(0.01) benign(0.019) TCGA-D3-A5GO-06 19 35849901 35849901 G T FFAR3 Missense_Mutation p.V37L 0.21 tolerated(0.36) benign(0.02) TCGA-D3-A5GO-06 19 36018807 36018807 A G SBSN Missense_Mutation p.V126A 0.46 tolerated(0.77) benign(0.058) TCGA-D3-A5GO-06 19 36047937 36047937 C T ATP4A Missense_Mutation p.D583N 0.31 tolerated(0.25) benign(0.016) TCGA-D3-A5GO-06 19 36223189 36223189 C T KMT2B Silent p.S1913S 0.40 TCGA-D3-A5GO-06 19 36634007 36634007 C T CAPNS1 Missense_Mutation p.R145C 0.46 tolerated(0.05) possibly_damaging(0.617) TCGA-D3-A5GO-06 19 372693 372693 G A THEG Silent p.S191S 0.26 TCGA-D3-A5GO-06 19 38935283 38935283 G A RYR1 Nonsense_Mutation p.W199* 0.48 TCGA-D3-A5GO-06 19 39086130 39086130 C T MAP4K1 Missense_Mutation p.D779N 0.36 tolerated(1) possibly_damaging(0.64) TCGA-D3-A5GO-06 19 40009430 40009430 C T SELV Silent p.L295L 0.33 TCGA-D3-A5GO-06 19 40384076 40384076 G A FCGBP Silent p.A3178A 0.20 TCGA-D3-A5GO-06 19 40720929 40720929 C T MAP3K10 Silent p.F865F 0.40 TCGA-D3-A5GO-06 19 41748903 41748903 G A AXL Silent p.K476K 0.28 TCGA-D3-A5GO-06 19 42083780 42083780 G A CEACAM21 Missense_Mutation p.R98Q 0.40 deleterious(0.04) probably_damaging(0.962) TCGA-D3-A5GO-06 19 42125769 42125769 C T CEACAM4 Splice_Site p.X224_splice 0.37 TCGA-D3-A5GO-06 19 42489288 42489288 G A ATP1A3 Missense_Mutation p.R272C 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 19 42489289 42489289 G A ATP1A3 Silent p.G271G 0.55 TCGA-D3-A5GO-06 19 43092991 43092991 G A CEACAM8 Silent p.T301T 0.35 TCGA-D3-A5GO-06 19 43233934 43233934 G A PSG3 Silent p.V328V 0.43 TCGA-D3-A5GO-06 19 43262158 43262158 G A PSG8 Silent p.L235L 0.38 TCGA-D3-A5GO-06 19 4328766 4328766 G A STAP2 Silent p.L166L 0.45 TCGA-D3-A5GO-06 19 4328767 4328767 G A STAP2 Silent p.L165L 0.45 TCGA-D3-A5GO-06 19 43910635 43910635 C T TEX101 5'UTR 0.24 TCGA-D3-A5GO-06 19 44130381 44130381 G A CADM4 Missense_Mutation p.R187C 0.44 tolerated(0.08) benign(0.002) TCGA-D3-A5GO-06 19 44471168 44471168 C T ZNF221 Missense_Mutation p.P505L 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A5GO-06 19 44500381 44500381 C T ZNF155 Silent p.F135F 0.47 TCGA-D3-A5GO-06 19 45004265 45004265 C T ZNF180 Missense_Mutation p.E10K 0.26 tolerated_low_confidence(0.15) benign(0.005) TCGA-D3-A5GO-06 19 4510789 4510789 G A PLIN4 Silent p.A1047A 0.43 TCGA-D3-A5GO-06 19 4513695 4513695 C T PLIN4 Missense_Mutation p.D79N 0.31 tolerated(0.07) possibly_damaging(0.881) TCGA-D3-A5GO-06 19 45303658 45303658 C T CBLC Silent p.S461S 0.27 TCGA-D3-A5GO-06 19 47823882 47823882 C T C5AR1 Missense_Mutation p.S283F 0.47 deleterious(0) possibly_damaging(0.878) TCGA-D3-A5GO-06 19 4817136 4817136 G A TICAM1 Silent p.A418A 0.35 TCGA-D3-A5GO-06 19 48386958 48386958 C T SULT2A1 Missense_Mutation p.R74Q 0.43 deleterious(0.01) probably_damaging(0.934) TCGA-D3-A5GO-06 19 49012224 49012224 C T LMTK3 Silent p.V176V 0.33 TCGA-D3-A5GO-06 19 49206492 49206492 C T FUT2 Silent p.A93A 0.20 TCGA-D3-A5GO-06 19 49497065 49497065 G A RUVBL2 5'UTR 0.36 TCGA-D3-A5GO-06 19 49558654 49558654 G A CGB7 5'UTR 0.43 TCGA-D3-A5GO-06 19 49654791 49654791 G T HRC Missense_Mutation p.F682L 0.37 tolerated(0.06) benign(0.324) TCGA-D3-A5GO-06 19 50031886 50031886 C T RCN3 Nonsense_Mutation p.Q53* 0.44 TCGA-D3-A5GO-06 19 50148305 50148305 C T SCAF1 Nonsense_Mutation p.R8* 0.26 TCGA-D3-A5GO-06 19 50473222 50473222 G A SIGLEC16 RNA 0.29 TCGA-D3-A5GO-06 19 50784856 50784856 C T MYH14 Silent p.S1432S 0.20 TCGA-D3-A5GO-06 19 51380002 51380002 G A KLK2 Missense_Mutation p.E161K 0.22 tolerated(0.57) benign(0.002) TCGA-D3-A5GO-06 19 51412005 51412005 G A KLK4 Missense_Mutation p.S102F 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GO-06 19 51729593 51729593 C T CD33 Silent p.I242I 0.17 TCGA-D3-A5GO-06 19 51770777 51770777 G A SIGLECL1 Silent p.R187R 0.51 TCGA-D3-A5GO-06 19 51771825 51771825 G A SIGLECL1 Missense_Mutation p.E190K 0.57 tolerated(0.16) benign(0.008) TCGA-D3-A5GO-06 19 51918442 51918442 G A SIGLEC10 Silent p.S441S 0.27 TCGA-D3-A5GO-06 19 52002861 52002861 C T SIGLEC12 Silent p.T306T 0.42 TCGA-D3-A5GO-06 19 52033753 52033753 G A SIGLEC6 Intron 0.44 TCGA-D3-A5GO-06 19 52034141 52034141 G A SIGLEC6 Missense_Mutation p.S167F 0.58 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A5GO-06 19 55086445 55086445 G A LILRA2 Silent p.S200S 0.27 TCGA-D3-A5GO-06 19 55106746 55106746 C T LILRA1 Silent p.A180A 0.47 TCGA-D3-A5GO-06 19 55147883 55147883 G A AC009892.10 Intron 0.61 TCGA-D3-A5GO-06 19 55497622 55497622 G A NLRP2 Missense_Mutation p.D769N 0.32 tolerated(0.23) possibly_damaging(0.463) TCGA-D3-A5GO-06 19 55512363 55512363 G A NLRP2 3'UTR 0.46 TCGA-D3-A5GO-06 19 55668486 55668486 G A TNNI3 Missense_Mutation p.P14S 0.55 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GO-06 19 56220346 56220346 G A NLRP9 Missense_Mutation p.P970S 0.39 tolerated(0.16) benign(0.352) TCGA-D3-A5GO-06 19 56321602 56321602 G A NLRP11 Missense_Mutation p.S125L 0.19 tolerated(0.1) benign(0.001) TCGA-D3-A5GO-06 19 56329477 56329477 C T NLRP11 Missense_Mutation p.E22K 0.26 deleterious(0.01) possibly_damaging(0.877) TCGA-D3-A5GO-06 19 56539859 56539859 C G NLRP5 Missense_Mutation p.P754A 0.38 deleterious(0.04) possibly_damaging(0.808) TCGA-D3-A5GO-06 19 56733418 56733418 C T ZSCAN5A Silent p.A339A 0.30 TCGA-D3-A5GO-06 19 57286319 57286319 G A ZIM2 Missense_Mutation p.P441S 0.22 tolerated(0.23) benign(0.002) TCGA-D3-A5GO-06 19 57327228 57327228 G A PEG3 Missense_Mutation p.S861F 0.51 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A5GO-06 19 57335704 57335704 C T PEG3 Missense_Mutation p.R107Q 0.39 tolerated(0.71) benign(0.003) TCGA-D3-A5GO-06 19 5733876 5733876 C T CATSPERD Missense_Mutation p.P96S 0.22 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 19 57723252 57723252 G A ZNF264 Missense_Mutation p.E263K 0.25 deleterious(0) probably_damaging(0.966) TCGA-D3-A5GO-06 19 5783899 5783899 G A PRR22 Missense_Mutation p.P120L 0.33 tolerated(0.69) benign(0.106) TCGA-D3-A5GO-06 19 5785203 5785203 A T DUS3L 3'UTR 0.19 TCGA-D3-A5GO-06 19 58718128 58718128 C T ZNF274 Missense_Mutation p.P100S 0.42 deleterious(0.02) benign(0.005) TCGA-D3-A5GO-06 19 6368633 6368633 C T CLPP Missense_Mutation p.P249L 0.40 deleterious(0.01) benign(0.349) TCGA-D3-A5GO-06 19 6694442 6694442 C T C3 Missense_Mutation p.G1052R 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 19 6694443 6694443 C T C3 Silent p.K1051K 0.28 TCGA-D3-A5GO-06 19 6710854 6710854 G A C3 Silent p.I494I 0.36 TCGA-D3-A5GO-06 19 6887590 6887590 C T EMR1 5'UTR 0.46 TCGA-D3-A5GO-06 19 6913769 6913769 G A EMR1 Missense_Mutation p.E410K 0.38 tolerated(0.1) benign(0.076) TCGA-D3-A5GO-06 19 8550960 8550960 C T HNRNPM Missense_Mutation p.R550C 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A5GO-06 19 8576706 8576706 G A ZNF414 Silent p.P223P 0.62 TCGA-D3-A5GO-06 19 8609287 8609287 C T MYO1F Missense_Mutation p.G473E 0.47 tolerated(1) benign(0.001) TCGA-D3-A5GO-06 19 9002184 9002184 G A MUC16 Silent p.F13440F 0.27 TCGA-D3-A5GO-06 19 9057400 9057400 C T MUC16 Missense_Mutation p.E10016K 0.39 unknown(0) TCGA-D3-A5GO-06 19 9060431 9060431 C T MUC16 Silent p.R9005R 0.38 TCGA-D3-A5GO-06 19 9061149 9061149 G A MUC16 Missense_Mutation p.S8766F 0.36 unknown(0) TCGA-D3-A5GO-06 19 9064338 9064338 G A MUC16 Missense_Mutation p.S7703F 0.29 unknown(0) TCGA-D3-A5GO-06 19 9065502 9065502 G T MUC16 Missense_Mutation p.S7315Y 0.28 unknown(0) TCGA-D3-A5GO-06 19 9068396 9068396 G A MUC16 Silent p.S6350S 0.54 TCGA-D3-A5GO-06 19 9068671 9068671 G A MUC16 Silent p.L6259L 0.34 TCGA-D3-A5GO-06 19 9069839 9069839 C T MUC16 Silent p.G5869G 0.43 TCGA-D3-A5GO-06 19 9090482 9090482 G A MUC16 Missense_Mutation p.P445S 0.44 unknown(0) TCGA-D3-A5GO-06 19 9960094 9960094 C T PIN1 3'UTR 0.31 TCGA-D3-A5GO-06 1 101339918 101339918 A G EXTL2 Silent p.S191S 0.67 TCGA-D3-A5GO-06 1 102312545 102312545 G A OLFM3 Intron 0.23 TCGA-D3-A5GO-06 1 103388895 103388895 G A COL11A1 Silent p.P1217P 0.67 TCGA-D3-A5GO-06 1 104297121 104297121 G A AMY1C Silent p.K293K 0.40 TCGA-D3-A5GO-06 1 10711037 10711037 G A CASZ1 Missense_Mutation p.S926F 0.57 tolerated_low_confidence(0.13) benign(0.397) TCGA-D3-A5GO-06 1 110604121 110604121 C T ALX3 Missense_Mutation p.G220E 0.17 tolerated(0.28) possibly_damaging(0.827) TCGA-D3-A5GO-06 1 110717458 110717458 C T SLC6A17 Missense_Mutation p.A210V 0.63 deleterious(0.01) possibly_damaging(0.7) TCGA-D3-A5GO-06 1 11158087 11158087 A G EXOSC10 Silent p.L80L 0.61 TCGA-D3-A5GO-06 1 111889233 111889233 C T PIFO 5'UTR 0.75 TCGA-D3-A5GO-06 1 112269701 112269701 G A FAM212B Silent p.P261P 0.13 TCGA-D3-A5GO-06 1 114380238 114380238 A G PTPN22 Missense_Mutation p.L595P 0.74 tolerated(0.37) benign(0.001) TCGA-D3-A5GO-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.64 tolerated(0.06) benign(0.006) TCGA-D3-A5GO-06 1 115829272 115829272 G A NGF Missense_Mutation p.R49C 0.65 deleterious(0.02) possibly_damaging(0.855) TCGA-D3-A5GO-06 1 11589959 11589959 C T PTCHD2 Silent p.F1015F 0.16 TCGA-D3-A5GO-06 1 118526499 118526499 G A SPAG17 Missense_Mutation p.S1936F 0.56 deleterious(0) possibly_damaging(0.601) TCGA-D3-A5GO-06 1 11856429 11856429 C T MTHFR Missense_Mutation p.G205E 0.59 tolerated(1) benign(0.001) TCGA-D3-A5GO-06 1 119427417 119427417 C T TBX15 Missense_Mutation p.D477N 0.67 deleterious_low_confidence(0) benign(0.257) TCGA-D3-A5GO-06 1 119923749 119923749 G A HAO2 Missense_Mutation p.R14Q 0.75 tolerated(0.19) benign(0.025) TCGA-D3-A5GO-06 1 119929329 119929329 C T HAO2 Nonsense_Mutation p.R216* 0.24 TCGA-D3-A5GO-06 1 120056552 120056552 G A HSD3B1 Missense_Mutation p.E136K 0.71 tolerated(0.09) benign(0.062) TCGA-D3-A5GO-06 1 12018692 12018692 C T PLOD1 Silent p.F321F 0.17 TCGA-D3-A5GO-06 1 120465314 120465314 G A NOTCH2 Silent p.L1649L 0.16 TCGA-D3-A5GO-06 1 12337081 12337081 T A VPS13D Missense_Mutation p.F1146I 0.56 benign(0.004) TCGA-D3-A5GO-06 1 12853479 12853479 C T PRAMEF1 Missense_Mutation p.L35F 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A5GO-06 1 12853586 12853586 G A PRAMEF1 Missense_Mutation p.M70I 0.13 tolerated(0.15) benign(0.009) TCGA-D3-A5GO-06 1 12887371 12887371 C T PRAMEF11 Silent p.V162V 0.13 TCGA-D3-A5GO-06 1 12939817 12939817 C T PRAMEF4 Missense_Mutation p.D329N 0.65 tolerated(0.44) benign(0.245) TCGA-D3-A5GO-06 1 1334431 1334431 G A CCNL2 Nonsense_Mutation p.Q86* 0.84 TCGA-D3-A5GO-06 1 14107244 14107244 C T PRDM2 Missense_Mutation p.P985L 0.19 unknown(0) TCGA-D3-A5GO-06 1 142713786 142713786 C T RP11-417J8.6 RNA 0.19 TCGA-D3-A5GO-06 1 144994824 144994824 G A PDE4DIP 5'UTR 0.09 TCGA-D3-A5GO-06 1 145560142 145560142 G A ANKRD35 Missense_Mutation p.A210T 0.71 deleterious(0.02) probably_damaging(0.945) TCGA-D3-A5GO-06 1 1455959 1455959 C T ATAD3A Missense_Mutation p.R286C 0.72 deleterious(0.04) benign(0.035) TCGA-D3-A5GO-06 1 148346680 148346680 G A NBPF20 Missense_Mutation p.P26L 0.10 possibly_damaging(0.722) TCGA-D3-A5GO-06 1 149915902 149915902 G A OTUD7B Missense_Mutation p.P796S 0.17 tolerated_low_confidence(0.32) benign(0.009) TCGA-D3-A5GO-06 1 151133436 151133436 G A LYSMD1 Silent p.V202V 0.29 TCGA-D3-A5GO-06 1 151775058 151775058 G A LINGO4 Silent p.P41P 0.70 TCGA-D3-A5GO-06 1 152060596 152060596 G A TCHHL1 Silent p.V8V 0.62 TCGA-D3-A5GO-06 1 152127867 152127867 G A RPTN Missense_Mutation p.H570Y 0.67 deleterious(0) possibly_damaging(0.863) TCGA-D3-A5GO-06 1 152281703 152281703 C T FLG Missense_Mutation p.E1887K 0.64 possibly_damaging(0.621) TCGA-D3-A5GO-06 1 152284234 152284234 C T FLG Missense_Mutation p.S1043N 0.16 probably_damaging(0.975) TCGA-D3-A5GO-06 1 152326973 152326973 C T FLG2 Missense_Mutation p.G1097R 0.20 unknown(0) TCGA-D3-A5GO-06 1 152538292 152538292 C T LCE3E 3'UTR 0.13 TCGA-D3-A5GO-06 1 152648614 152648614 C T LCE2C Silent p.F41F 0.15 TCGA-D3-A5GO-06 1 152671793 152671793 C T LCE2A 3'UTR 0.84 TCGA-D3-A5GO-06 1 152733853 152733853 C T KPRP 3'UTR 0.14 TCGA-D3-A5GO-06 1 153084965 153084965 C T SPRR2F 3'UTR 0.20 TCGA-D3-A5GO-06 1 153177379 153177379 C T LELP1 Missense_Mutation p.P66S 0.68 tolerated_low_confidence(0.28) unknown(0) TCGA-D3-A5GO-06 1 153410686 153410686 G A S100A7L2 Silent p.F51F 0.57 TCGA-D3-A5GO-06 1 153945460 153945460 G A CREB3L4 Missense_Mutation p.V217I 0.72 tolerated(0.26) benign(0.12) TCGA-D3-A5GO-06 1 154090291 154090291 C T NUP210L Silent p.T510T 0.22 TCGA-D3-A5GO-06 1 154520294 154520294 G A TDRD10 3'UTR 0.21 TCGA-D3-A5GO-06 1 155005955 155005955 G A DCST2 Nonsense_Mutation p.Q75* 0.62 TCGA-D3-A5GO-06 1 155173095 155173095 C T THBS3 Silent p.G225G 0.88 TCGA-D3-A5GO-06 1 155207281 155207281 G A GBA Missense_Mutation p.P284S 0.10 tolerated(0.37) benign(0.035) TCGA-D3-A5GO-06 1 155291627 155291627 C T RUSC1 Silent p.S21S 0.17 TCGA-D3-A5GO-06 1 1559299 1559299 C T MIB2 Silent p.D246D 0.70 TCGA-D3-A5GO-06 1 156374372 156374372 G A C1orf61 Missense_Mutation p.H149Y 0.08 tolerated_low_confidence(1) benign(0.094) TCGA-D3-A5GO-06 1 156640463 156640463 C T NES Missense_Mutation p.E1173K 0.12 tolerated(0.09) benign(0.149) TCGA-D3-A5GO-06 1 156837938 156837938 C T NTRK1 Silent p.R157R 0.12 TCGA-D3-A5GO-06 1 15772136 15772136 C T CTRC Silent p.S228S 0.66 TCGA-D3-A5GO-06 1 157767670 157767670 C T FCRL1 Missense_Mutation p.E392K 0.67 tolerated(0.42) benign(0.007) TCGA-D3-A5GO-06 1 158152894 158152894 C T CD1D Silent p.S278S 0.69 TCGA-D3-A5GO-06 1 158326713 158326713 C T CD1E 3'UTR 0.75 TCGA-D3-A5GO-06 1 158435404 158435404 C T OR10K1 Missense_Mutation p.S18L 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GO-06 1 158548752 158548752 G A OR10X1 Missense_Mutation p.A313V 0.12 deleterious(0) possibly_damaging(0.753) TCGA-D3-A5GO-06 1 158576567 158576567 C T OR10Z1 Silent p.F113F 0.71 TCGA-D3-A5GO-06 1 158615073 158615073 C T SPTA1 Missense_Mutation p.E1367K 0.17 tolerated(0.73) benign(0.094) TCGA-D3-A5GO-06 1 158655074 158655074 C T SPTA1 Missense_Mutation p.E30K 0.64 tolerated(0.16) benign(0.045) TCGA-D3-A5GO-06 1 158687228 158687228 C T OR6K3 Silent p.R226R 0.64 TCGA-D3-A5GO-06 1 159043086 159043086 A T AIM2 Silent p.I68I 0.63 TCGA-D3-A5GO-06 1 159410499 159410499 G A OR10J1 Silent p.G317G 0.64 TCGA-D3-A5GO-06 1 159558228 159558228 G A APCS Silent p.V134V 0.65 TCGA-D3-A5GO-06 1 15978205 15978205 C T DDI2 Missense_Mutation p.S333F 0.19 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A5GO-06 1 160492989 160492989 C T SLAMF6 5'UTR 0.23 TCGA-D3-A5GO-06 1 160535278 160535278 C T CD84 Missense_Mutation p.E102K 0.64 tolerated(0.06) possibly_damaging(0.511) TCGA-D3-A5GO-06 1 160850433 160850433 G A ITLN1 Silent p.V210V 0.36 TCGA-D3-A5GO-06 1 161018781 161018781 C T ARHGAP30 Missense_Mutation p.G677E 0.70 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-D3-A5GO-06 1 16256880 16256880 C T SPEN Missense_Mutation p.S1382F 0.08 probably_damaging(0.996) TCGA-D3-A5GO-06 1 166890214 166890214 C T ILDR2 Silent p.R538R 0.30 TCGA-D3-A5GO-06 1 167097756 167097756 G A DUSP27 Missense_Mutation p.E1130K 0.67 deleterious(0.04) benign(0.04) TCGA-D3-A5GO-06 1 16736209 16736209 G A SPATA21 Silent p.V158V 0.17 TCGA-D3-A5GO-06 1 170955831 170955831 C T MROH9 Missense_Mutation p.H287Y 0.14 tolerated(0.47) benign(0.036) TCGA-D3-A5GO-06 1 170961317 170961317 G A MROH9 Silent p.Q347Q 0.71 TCGA-D3-A5GO-06 1 172501615 172501615 G A SUCO 5'Flank 0.77 TCGA-D3-A5GO-06 1 173702945 173702945 A T KLHL20 Missense_Mutation p.Q39H 0.75 tolerated(0.11) benign(0.252) TCGA-D3-A5GO-06 1 17413097 17413097 G A PADI2 Silent p.F251F 0.14 TCGA-D3-A5GO-06 1 175048480 175048480 C T TNN Missense_Mutation p.H141Y 0.21 tolerated(0.81) benign(0.049) TCGA-D3-A5GO-06 1 175067711 175067711 C T TNN Missense_Mutation p.A700V 0.15 tolerated(0.19) benign(0.004) TCGA-D3-A5GO-06 1 175372560 175372560 G A TNR Missense_Mutation p.S231F 0.68 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GO-06 1 17555245 17555245 G A PADI1 Missense_Mutation p.D260N 0.64 tolerated(0.4) benign(0.025) TCGA-D3-A5GO-06 1 17657611 17657611 G A PADI4 Missense_Mutation p.M80I 0.12 tolerated(0.08) benign(0.315) TCGA-D3-A5GO-06 1 176680981 176680981 C T PAPPA2 Missense_Mutation p.S1221L 0.11 deleterious(0.04) benign(0.157) TCGA-D3-A5GO-06 1 176760566 176760566 C T PAPPA2 Silent p.P1656P 0.62 TCGA-D3-A5GO-06 1 176992707 176992707 C T ASTN1 Missense_Mutation p.G424E 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 1 178834189 178834189 C T ANGPTL1 Silent p.R241R 0.15 TCGA-D3-A5GO-06 1 179437688 179437688 G A AXDND1 Missense_Mutation p.E637K 0.63 tolerated(0.55) benign(0.176) TCGA-D3-A5GO-06 1 179533877 179533877 G A NPHS2 Missense_Mutation p.S109F 0.84 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A5GO-06 1 181706660 181706660 G A CACNA1E Splice_Site p.X1141_splice 0.05 TCGA-D3-A5GO-06 1 181706661 181706661 G A CACNA1E Silent p.P1141P 0.06 TCGA-D3-A5GO-06 1 181724441 181724441 C T CACNA1E Silent p.F1299F 0.64 TCGA-D3-A5GO-06 1 181725162 181725162 C T CACNA1E Missense_Mutation p.H1354Y 0.23 deleterious(0) possibly_damaging(0.784) TCGA-D3-A5GO-06 1 183253017 183253017 C T NMNAT2 Intron 0.28 TCGA-D3-A5GO-06 1 183775571 183775571 A C RGL1 Missense_Mutation p.K65N 0.19 deleterious(0) possibly_damaging(0.632) TCGA-D3-A5GO-06 1 186277044 186277044 G A PRG4 Silent p.K731K 0.57 TCGA-D3-A5GO-06 1 186925455 186925455 G A PLA2G4A Missense_Mutation p.E520K 0.66 tolerated(0.14) probably_damaging(0.991) TCGA-D3-A5GO-06 1 18703394 18703394 G A IGSF21 Missense_Mutation p.R401Q 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A5GO-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.67 tolerated(0.08) benign(0.001) TCGA-D3-A5GO-06 1 19203940 19203940 C G ALDH4A1 Silent p.L369L 0.28 TCGA-D3-A5GO-06 1 196395082 196395082 C T KCNT2 Missense_Mutation p.D341N 0.15 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A5GO-06 1 196874364 196874364 C T CFHR4 Missense_Mutation p.S127F 0.66 tolerated(0.17) probably_damaging(0.92) TCGA-D3-A5GO-06 1 196973818 196973818 C T CFHR5 Missense_Mutation p.P453L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 1 197390421 197390421 T A CRB1 Missense_Mutation p.F488Y 0.69 deleterious(0.01) possibly_damaging(0.72) TCGA-D3-A5GO-06 1 197390750 197390750 C T CRB1 Missense_Mutation p.P598S 0.17 tolerated(0.43) benign(0.277) TCGA-D3-A5GO-06 1 200017300 200017300 C T NR5A2 Missense_Mutation p.A155V 0.64 deleterious(0) probably_damaging(0.95) TCGA-D3-A5GO-06 1 201869690 201869690 C T LMOD1 Missense_Mutation p.E151K 0.17 possibly_damaging(0.51) TCGA-D3-A5GO-06 1 202287272 202287272 C T LGR6 Missense_Mutation p.S614F 0.74 tolerated(0.63) possibly_damaging(0.703) TCGA-D3-A5GO-06 1 202418114 202418114 C T PPP1R12B Intron 0.56 TCGA-D3-A5GO-06 1 202715047 202715047 A G KDM5B Silent p.S754S 0.73 TCGA-D3-A5GO-06 1 203138109 203138109 C T MYBPH Missense_Mutation p.D448N 0.70 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 1 204957842 204957842 C T NFASC Missense_Mutation p.P892L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 1 205555205 205555205 C T MFSD4 Missense_Mutation p.P340L 0.15 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GO-06 1 205801747 205801747 C T PM20D1 Missense_Mutation p.E422K 0.16 tolerated(0.14) benign(0.139) TCGA-D3-A5GO-06 1 205814611 205814611 G A PM20D1 Nonsense_Mutation p.Q111* 0.19 TCGA-D3-A5GO-06 1 207235894 207235894 C T PFKFB2 Intron 0.17 TCGA-D3-A5GO-06 1 207850845 207850845 C T CR1L Missense_Mutation p.S70F 0.12 tolerated(0.47) benign(0.001) TCGA-D3-A5GO-06 1 21177808 21177808 C T EIF4G3 Missense_Mutation p.G1189S 0.19 tolerated(0.42) benign(0.263) TCGA-D3-A5GO-06 1 214557039 214557039 G A PTPN14 Missense_Mutation p.S720L 0.68 tolerated(0.74) benign(0) TCGA-D3-A5GO-06 1 215751403 215751403 C T KCTD3 Missense_Mutation p.H126Y 0.11 tolerated(0.27) probably_damaging(0.993) TCGA-D3-A5GO-06 1 215824121 215824121 C T USH2A Missense_Mutation p.G4719E 0.67 probably_damaging(1) TCGA-D3-A5GO-06 1 216497555 216497555 C T USH2A Missense_Mutation p.G428E 0.13 possibly_damaging(0.651) TCGA-D3-A5GO-06 1 216498891 216498891 G A USH2A Missense_Mutation p.S300L 0.68 possibly_damaging(0.72) TCGA-D3-A5GO-06 1 22206685 22206685 G A HSPG2 Missense_Mutation p.P753L 0.14 possibly_damaging(0.889) TCGA-D3-A5GO-06 1 22206686 22206686 G A HSPG2 Missense_Mutation p.P753S 0.14 benign(0.418) TCGA-D3-A5GO-06 1 222794551 222794551 C T MIA3 Missense_Mutation p.R62C 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 1 222823646 222823646 A G MIA3 Missense_Mutation p.Q1215R 0.68 deleterious(0.04) possibly_damaging(0.606) TCGA-D3-A5GO-06 1 224868717 224868717 C T CNIH3 Missense_Mutation p.P47S 0.16 tolerated(0.91) probably_damaging(0.981) TCGA-D3-A5GO-06 1 226420191 226420191 G A LIN9 3'UTR 0.14 TCGA-D3-A5GO-06 1 227198755 227198755 G A CDC42BPA Intron 0.40 TCGA-D3-A5GO-06 1 228509697 228509697 G C OBSCN Missense_Mutation p.R6009P 0.31 benign(0.072) TCGA-D3-A5GO-06 1 228547941 228547941 G A OBSCN Intron 0.11 TCGA-D3-A5GO-06 1 228558433 228558433 C T OBSCN Silent p.F7697F 0.15 TCGA-D3-A5GO-06 1 228559048 228559048 C T OBSCN Missense_Mutation p.P7814S 0.21 benign(0.342) TCGA-D3-A5GO-06 1 229773631 229773631 G C URB2 Missense_Mutation p.V1091L 0.16 tolerated(0.06) benign(0.006) TCGA-D3-A5GO-06 1 233270915 233270915 G A PCNXL2 Silent p.I1227I 0.81 TCGA-D3-A5GO-06 1 233515161 233515161 C T MLK4 Silent p.S803S 0.13 TCGA-D3-A5GO-06 1 233807022 233807022 C T KCNK1 Silent p.L253L 0.22 TCGA-D3-A5GO-06 1 235747047 235747047 C T GNG4 Missense_Mutation p.R31K 0.70 deleterious(0.01) possibly_damaging(0.803) TCGA-D3-A5GO-06 1 237880516 237880516 G A RYR2 Missense_Mutation p.E3448K 0.75 benign(0.325) TCGA-D3-A5GO-06 1 238045787 238045787 C T ZP4 Missense_Mutation p.A520T 0.65 tolerated(0.13) benign(0.013) TCGA-D3-A5GO-06 1 240072452 240072452 G A CHRM3 Silent p.K567K 0.34 TCGA-D3-A5GO-06 1 24201229 24201229 C T CNR2 Missense_Mutation p.M293I 0.14 tolerated(0.09) possibly_damaging(0.452) TCGA-D3-A5GO-06 1 24201850 24201850 G A CNR2 Silent p.V86V 0.63 TCGA-D3-A5GO-06 1 242451697 242451697 C T PLD5 Nonsense_Mutation p.W154* 0.16 TCGA-D3-A5GO-06 1 24727916 24727916 G A STPG1 5'UTR 0.63 TCGA-D3-A5GO-06 1 247768908 247768908 T G OR2G3 Missense_Mutation p.S7R 0.85 deleterious(0) probably_damaging(0.917) TCGA-D3-A5GO-06 1 247769160 247769160 G A OR2G3 Silent p.T91T 0.72 TCGA-D3-A5GO-06 1 247902602 247902602 G A OR14K1 Missense_Mutation p.R229K 0.14 tolerated(0.86) benign(0.013) TCGA-D3-A5GO-06 1 248028152 248028152 G A TRIM58 Missense_Mutation p.R221Q 0.30 tolerated(0.29) benign(0.006) TCGA-D3-A5GO-06 1 248028153 248028153 G A TRIM58 Silent p.R221R 0.30 TCGA-D3-A5GO-06 1 248112454 248112454 C T OR2L8 Nonsense_Mutation p.Q99* 0.07 TCGA-D3-A5GO-06 1 248224278 248224278 C T OR2L3 Nonsense_Mutation p.Q99* 0.57 TCGA-D3-A5GO-06 1 248263418 248263418 G A OR2L13 Silent p.V247V 0.63 TCGA-D3-A5GO-06 1 248308966 248308966 G A OR2M5 Missense_Mutation p.E173K 0.58 tolerated(0.22) benign(0.119) TCGA-D3-A5GO-06 1 248636944 248636944 C T OR2T3 Missense_Mutation p.S98F 0.69 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A5GO-06 1 248737766 248737766 G A OR2T34 Missense_Mutation p.S98F 0.65 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A5GO-06 1 27121369 27121369 G A PIGV Missense_Mutation p.D282N 0.17 tolerated(0.06) benign(0.03) TCGA-D3-A5GO-06 1 27878359 27878359 G C AHDC1 Missense_Mutation p.R90G 0.19 deleterious_low_confidence(0.03) benign(0.363) TCGA-D3-A5GO-06 1 28476822 28476822 G A PTAFR Silent p.V237V 0.18 TCGA-D3-A5GO-06 1 31212743 31212743 G A LAPTM5 Silent p.I100I 0.11 TCGA-D3-A5GO-06 1 32258906 32258906 G A SPOCD1 Silent p.V886V 0.20 TCGA-D3-A5GO-06 1 32745777 32745777 G A LCK Silent p.T431T 0.62 TCGA-D3-A5GO-06 1 33282819 33282819 C T YARS Silent p.E9E 0.14 TCGA-D3-A5GO-06 1 34090197 34090197 G A CSMD2 Silent p.S1809S 0.12 TCGA-D3-A5GO-06 1 34663306 34663306 G A C1orf94 Silent p.K267K 0.18 TCGA-D3-A5GO-06 1 35223256 35223256 C T GJB5 Missense_Mutation p.H109Y 0.67 tolerated(0.42) benign(0) TCGA-D3-A5GO-06 1 37267588 37267588 C T GRIK3 Missense_Mutation p.R875Q 0.11 tolerated(0.29) benign(0.279) TCGA-D3-A5GO-06 1 38281084 38281084 G A MTF1 Silent p.S662S 0.26 TCGA-D3-A5GO-06 1 39854048 39854048 C T MACF1 Silent p.A3116A 0.61 TCGA-D3-A5GO-06 1 39945566 39945566 C T MACF1 Missense_Mutation p.S5264F 0.15 probably_damaging(0.983) TCGA-D3-A5GO-06 1 40226040 40226040 G A BMP8B 3'UTR 0.21 TCGA-D3-A5GO-06 1 40307404 40307404 T A TRIT1 3'UTR 0.11 TCGA-D3-A5GO-06 1 40766822 40766822 G A COL9A2 3'UTR 0.20 TCGA-D3-A5GO-06 1 42045560 42045560 G A HIVEP3 Missense_Mutation p.P1637S 0.15 probably_damaging(0.998) TCGA-D3-A5GO-06 1 42657234 42657234 G A FOXJ3 Missense_Mutation p.S364L 0.10 tolerated(0.3) benign(0.174) TCGA-D3-A5GO-06 1 43778223 43778223 C T TIE1 Silent p.T626T 0.10 TCGA-D3-A5GO-06 1 45973110 45973110 C T MMACHC Missense_Mutation p.T55M 0.05 deleterious(0) probably_damaging(0.992) TCGA-D3-A5GO-06 1 46487735 46487735 C T MAST2 Silent p.L468L 0.71 TCGA-D3-A5GO-06 1 47333651 47333651 C T CYP4Z2P RNA 0.14 TCGA-D3-A5GO-06 1 47533279 47533279 G A CYP4Z1 Missense_Mutation p.M39I 0.72 deleterious(0.04) benign(0) TCGA-D3-A5GO-06 1 47735460 47735460 G A STIL Missense_Mutation p.S821F 0.66 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GO-06 1 51121201 51121201 C T FAF1 Splice_Site p.X220_splice 0.12 TCGA-D3-A5GO-06 1 55072900 55072900 C T ACOT11 Silent p.F488F 0.66 TCGA-D3-A5GO-06 1 55167785 55167785 C T MROH7 Missense_Mutation p.S1103F 0.63 tolerated(0.25) benign(0.072) TCGA-D3-A5GO-06 1 55282732 55282732 G A C1orf177 Missense_Mutation p.R374Q 0.18 tolerated(0.18) probably_damaging(1) TCGA-D3-A5GO-06 1 55474364 55474364 G A BSND 3'UTR 0.12 TCGA-D3-A5GO-06 1 56962269 56962269 G A PPAP2B Missense_Mutation p.S297L 0.19 tolerated(0.18) benign(0.164) TCGA-D3-A5GO-06 1 57756754 57756754 C T DAB1 5'UTR 0.78 TCGA-D3-A5GO-06 1 60375600 60375600 G A CYP2J2 Silent p.F239F 0.16 TCGA-D3-A5GO-06 1 63119728 63119728 G A DOCK7 Missense_Mutation p.P83S 0.15 deleterious(0.02) possibly_damaging(0.721) TCGA-D3-A5GO-06 1 65138896 65138896 C T CACHD1 Missense_Mutation p.P805S 0.16 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 1 67896100 67896100 C T SERBP1 5'Flank 0.15 TCGA-D3-A5GO-06 1 70504260 70504260 A T LRRC7 Missense_Mutation p.E880V 0.12 deleterious_low_confidence(0) benign(0.247) TCGA-D3-A5GO-06 1 70541968 70541968 G A LRRC7 Missense_Mutation p.G1442E 0.18 tolerated(0.11) possibly_damaging(0.526) TCGA-D3-A5GO-06 1 72400827 72400827 G A NEGR1 Missense_Mutation p.P115L 0.61 tolerated(0.33) benign(0.096) TCGA-D3-A5GO-06 1 74492646 74492646 C T LRRIQ3 Missense_Mutation p.E576K 0.45 tolerated(0.27) benign(0.035) TCGA-D3-A5GO-06 1 75009718 75009718 G A TNNI3K 3'UTR 0.36 TCGA-D3-A5GO-06 1 75038517 75038517 C T C1orf173 Missense_Mutation p.M959I 0.12 tolerated(0.62) benign(0.032) TCGA-D3-A5GO-06 1 75596528 75596528 C T LHX8 Intron 0.53 TCGA-D3-A5GO-06 1 77528732 77528732 C T ST6GALNAC5 Silent p.L284L 0.64 TCGA-D3-A5GO-06 1 82432220 82432220 C T LPHN2 Missense_Mutation p.S742L 0.17 deleterious(0.02) benign(0.137) TCGA-D3-A5GO-06 1 82434966 82434966 C T LPHN2 Silent p.F859F 0.67 TCGA-D3-A5GO-06 1 85331160 85331160 C T LPAR3 Missense_Mutation p.R215K 0.65 tolerated(0.27) benign(0.156) TCGA-D3-A5GO-06 1 85331549 85331549 G A LPAR3 Silent p.F85F 0.15 TCGA-D3-A5GO-06 1 85484831 85484831 G T MCOLN3 Missense_Mutation p.S546Y 0.17 deleterious(0.01) benign(0.374) TCGA-D3-A5GO-06 1 86591737 86591737 G A COL24A1 Silent p.F94F 0.12 TCGA-D3-A5GO-06 1 89520410 89520410 G T GBP1 Silent p.V540V 0.70 TCGA-D3-A5GO-06 1 89599058 89599058 C T GBP7 Missense_Mutation p.M515I 0.51 tolerated(0.18) benign(0.004) TCGA-D3-A5GO-06 1 92185652 92185652 G A TGFBR3 Missense_Mutation p.P404L 0.23 tolerated(0.11) benign(0.157) TCGA-D3-A5GO-06 1 97250670 97250670 C T PTBP2 Missense_Mutation p.S255F 0.72 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 1 97771853 97771853 C T DPYD Missense_Mutation p.D687N 0.65 tolerated(0.17) benign(0.01) TCGA-D3-A5GO-06 1 9781283 9781283 C T PIK3CD Silent p.A596A 0.58 TCGA-D3-A5GO-06 20 10036272 10036272 G A ANKEF1 Silent p.E765E 0.32 TCGA-D3-A5GO-06 20 1293297 1293297 G A SDCBP2 Missense_Mutation p.S165L 0.59 tolerated(0.08) benign(0.016) TCGA-D3-A5GO-06 20 18296625 18296625 C A ZNF133 Missense_Mutation p.S376Y 0.34 deleterious(0) probably_damaging(0.978) TCGA-D3-A5GO-06 20 23345093 23345093 C T GZF1 Missense_Mutation p.R25C 0.58 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 20 23731383 23731383 C T CST1 Missense_Mutation p.D41N 0.49 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GO-06 20 30409458 30409458 C T MYLK2 Silent p.F230F 0.17 TCGA-D3-A5GO-06 20 30584802 30584802 G A XKR7 Missense_Mutation p.G428S 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 20 30662441 30662441 G A HCK Nonsense_Mutation p.W115* 0.06 TCGA-D3-A5GO-06 20 31367873 31367873 C T DNMT3B Intron 0.24 TCGA-D3-A5GO-06 20 31374395 31374395 C T DNMT3B Missense_Mutation p.H132Y 0.12 deleterious_low_confidence(0.03) benign(0.16) TCGA-D3-A5GO-06 20 3145151 3145151 C A LZTS3 Missense_Mutation p.K657N 0.28 tolerated(0.22) benign(0.02) TCGA-D3-A5GO-06 20 31598902 31598902 G A BPIFB2 Missense_Mutation p.G61E 0.24 deleterious(0.03) benign(0.272) TCGA-D3-A5GO-06 20 31627211 31627211 C T BPIFB6 Missense_Mutation p.P320L 0.17 tolerated(0.13) benign(0.19) TCGA-D3-A5GO-06 20 31699333 31699333 C T BPIFB4 3'UTR 0.14 TCGA-D3-A5GO-06 20 31699359 31699359 C T BPIFB4 3'UTR 0.31 TCGA-D3-A5GO-06 20 32378924 32378924 C T ZNF341 Silent p.R715R 0.29 TCGA-D3-A5GO-06 20 33330826 33330826 G A NCOA6 Silent p.V1078V 0.13 TCGA-D3-A5GO-06 20 33345778 33345778 G A NCOA6 Missense_Mutation p.P258L 0.21 benign(0.046) TCGA-D3-A5GO-06 20 33500980 33500980 C T ACSS2 Silent p.L152L 0.30 TCGA-D3-A5GO-06 20 34091457 34091457 C T CEP250 Nonsense_Mutation p.Q1754* 0.32 TCGA-D3-A5GO-06 20 34092150 34092150 C T CEP250 Missense_Mutation p.L1985F 0.29 probably_damaging(0.915) TCGA-D3-A5GO-06 20 34129792 34129792 G A ERGIC3 5'UTR 0.29 TCGA-D3-A5GO-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.36 TCGA-D3-A5GO-06 20 34807691 34807691 G A EPB41L1 Silent p.G788G 0.21 TCGA-D3-A5GO-06 20 35060493 35060493 C T DLGAP4 Missense_Mutation p.P125S 0.34 tolerated(0.08) benign(0.228) TCGA-D3-A5GO-06 20 35390870 35390870 G A DSN1 Missense_Mutation p.S195L 0.22 tolerated(0.07) possibly_damaging(0.828) TCGA-D3-A5GO-06 20 36147523 36147523 G A BLCAP Silent p.N18N 0.35 TCGA-D3-A5GO-06 20 3672567 3672567 C T SIGLEC1 Missense_Mutation p.G1438E 0.51 tolerated(0.28) benign(0.219) TCGA-D3-A5GO-06 20 36869266 36869266 G A KIAA1755 Missense_Mutation p.P423S 0.13 tolerated(0.08) benign(0.021) TCGA-D3-A5GO-06 20 37634987 37634987 C T DHX35 Missense_Mutation p.R404C 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 20 40052233 40052233 G A CHD6 Missense_Mutation p.S1485F 0.38 deleterious(0) probably_damaging(0.959) TCGA-D3-A5GO-06 20 40770568 40770568 C T PTPRT Silent p.G919G 0.30 TCGA-D3-A5GO-06 20 41076952 41076952 G A PTPRT Silent p.L490L 0.39 TCGA-D3-A5GO-06 20 42143675 42143675 G A L3MBTL1 Missense_Mutation p.D155N 0.29 tolerated(0.48) benign(0.222) TCGA-D3-A5GO-06 20 42275661 42275661 C T IFT52 3'UTR 0.17 TCGA-D3-A5GO-06 20 42355047 42355047 G A GTSF1L Silent p.P96P 0.24 TCGA-D3-A5GO-06 20 42694456 42694456 C T TOX2 Silent p.F355F 0.29 TCGA-D3-A5GO-06 20 43851562 43851562 C T SEMG2 Missense_Mutation p.S430F 0.32 tolerated(0.05) possibly_damaging(0.788) TCGA-D3-A5GO-06 20 43929563 43929563 C T MATN4 Missense_Mutation p.G326R 0.15 benign(0.307) TCGA-D3-A5GO-06 20 44314568 44314568 C T WFDC10B Intron 0.30 TCGA-D3-A5GO-06 20 44333185 44333185 C T WFDC13 Missense_Mutation p.S64F 0.22 deleterious(0) possibly_damaging(0.483) TCGA-D3-A5GO-06 20 45808505 45808505 C T EYA2 Missense_Mutation p.L420F 0.25 tolerated(0.07) probably_damaging(0.996) TCGA-D3-A5GO-06 20 47601351 47601351 C T ARFGEF2 Silent p.L682L 0.37 TCGA-D3-A5GO-06 20 49434759 49434759 G A BCAS4 Silent p.V64V 0.39 TCGA-D3-A5GO-06 20 50049033 50049033 A G NFATC2 Missense_Mutation p.Y765H 0.31 tolerated(0.09) benign(0.418) TCGA-D3-A5GO-06 20 50226648 50226648 G A ATP9A Silent p.L876L 0.30 TCGA-D3-A5GO-06 20 50273611 50273611 C T ATP9A Missense_Mutation p.E458K 0.14 deleterious(0.01) benign(0.393) TCGA-D3-A5GO-06 20 51870558 51870558 G A TSHZ2 Silent p.S187S 0.33 TCGA-D3-A5GO-06 20 51870756 51870756 G A TSHZ2 Silent p.T253T 0.17 TCGA-D3-A5GO-06 20 51871684 51871684 C T TSHZ2 Nonsense_Mutation p.Q563* 0.28 TCGA-D3-A5GO-06 20 51872005 51872005 C T TSHZ2 Silent p.L670L 0.24 TCGA-D3-A5GO-06 20 52192400 52192400 G A ZNF217 Missense_Mutation p.P968L 0.41 tolerated(0.2) benign(0.079) TCGA-D3-A5GO-06 20 5294689 5294689 G A PROKR2 Silent p.F109F 0.51 TCGA-D3-A5GO-06 20 5528244 5528244 G A GPCPD1 3'UTR 0.49 TCGA-D3-A5GO-06 20 56078574 56078574 C T CTCFL Silent p.K586K 0.33 TCGA-D3-A5GO-06 20 56137260 56137260 G A PCK1 Missense_Mutation p.E120K 0.21 tolerated(0.6) benign(0.006) TCGA-D3-A5GO-06 20 56188125 56188125 C T ZBP1 Intron 0.50 TCGA-D3-A5GO-06 20 56190614 56190614 T G ZBP1 Silent p.A94A 0.28 TCGA-D3-A5GO-06 20 57429101 57429101 T A GNAS Missense_Mutation p.S261T 0.55 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A5GO-06 20 57769535 57769535 C T ZNF831 Missense_Mutation p.S1154F 0.13 tolerated(0.73) benign(0.355) TCGA-D3-A5GO-06 20 58570991 58570991 C T CDH26 Silent p.V590V 0.36 TCGA-D3-A5GO-06 20 6021914 6021914 C T LRRN4 Silent p.L659L 0.38 TCGA-D3-A5GO-06 20 60485487 60485487 G A CDH4 Missense_Mutation p.E400K 0.33 tolerated(0.06) benign(0.369) TCGA-D3-A5GO-06 20 60991839 60991839 T A RBBP8NL Missense_Mutation p.N97I 0.20 deleterious(0) possibly_damaging(0.78) TCGA-D3-A5GO-06 20 61542877 61542877 G A DIDO1 Nonsense_Mutation p.R30* 0.13 TCGA-D3-A5GO-06 20 61917767 61917767 C T ARFGAP1 Missense_Mutation p.S303L 0.13 deleterious(0.01) possibly_damaging(0.497) TCGA-D3-A5GO-06 20 62250810 62250810 G A GMEB2 5'UTR 0.28 TCGA-D3-A5GO-06 20 62321371 62321371 C T RTEL1 Intron 0.16 TCGA-D3-A5GO-06 20 7920936 7920936 G A HAO1 Missense_Mutation p.S45F 0.43 deleterious(0) possibly_damaging(0.55) TCGA-D3-A5GO-06 20 858803 858803 C T ANGPT4 Splice_Site p.X407_splice 0.26 TCGA-D3-A5GO-06 20 8639258 8639258 C T PLCB1 Missense_Mutation p.R257W 0.22 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GO-06 20 944609 944609 C T RSPO4 Silent p.R188R 0.56 TCGA-D3-A5GO-06 20 9496162 9496162 C T LAMP5 Missense_Mutation p.P43S 0.30 tolerated(0.12) probably_damaging(1) TCGA-D3-A5GO-06 20 9496652 9496652 C T LAMP5 Silent p.I81I 0.25 TCGA-D3-A5GO-06 20 9525085 9525085 C T PAK7 Silent p.R600R 0.44 TCGA-D3-A5GO-06 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.14 deleterious(0.03) possibly_damaging(0.883) TCGA-D3-A5GO-06 21 10944679 10944679 C T TPTE Silent p.R185R 0.11 TCGA-D3-A5GO-06 21 11015004 11015004 G A TPTE RNA 0.25 TCGA-D3-A5GO-06 21 11021122 11021122 G A BAGE2 RNA 0.06 TCGA-D3-A5GO-06 21 11029673 11029673 G A BAGE2 RNA 0.13 TCGA-D3-A5GO-06 21 11039183 11039183 G A BAGE2 RNA 0.07 TCGA-D3-A5GO-06 21 11039366 11039366 G A BAGE2 RNA 0.08 TCGA-D3-A5GO-06 21 19653490 19653490 C T TMPRSS15 Missense_Mutation p.M845I 0.39 tolerated(0.32) benign(0.001) TCGA-D3-A5GO-06 21 19725220 19725220 C T TMPRSS15 Missense_Mutation p.G391R 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A5GO-06 21 27141393 27141393 T A GABPA Silent p.T405T 0.40 TCGA-D3-A5GO-06 21 27945290 27945290 G A CYYR1 5'UTR 0.43 TCGA-D3-A5GO-06 21 27945291 27945291 G A CYYR1 5'UTR 0.45 TCGA-D3-A5GO-06 21 30318484 30318484 G A LTN1 Missense_Mutation p.L1251F 0.29 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A5GO-06 21 30437396 30437396 G C CCT8 Missense_Mutation p.H219D 0.35 deleterious(0.01) benign(0.264) TCGA-D3-A5GO-06 21 31986039 31986039 C T KRTAP6-1 Missense_Mutation p.G62E 0.39 unknown(0) TCGA-D3-A5GO-06 21 32502613 32502613 G A TIAM1 Silent p.S1321S 0.43 TCGA-D3-A5GO-06 21 32502614 32502614 G A TIAM1 Missense_Mutation p.S1321F 0.44 tolerated(0.05) possibly_damaging(0.898) TCGA-D3-A5GO-06 21 33951122 33951122 C T TCP10L Missense_Mutation p.G127E 0.39 tolerated(0.13) benign(0.084) TCGA-D3-A5GO-06 21 41414557 41414557 G A DSCAM Silent p.S1809S 0.34 TCGA-D3-A5GO-06 21 41459205 41459205 C T DSCAM Missense_Mutation p.R1287Q 0.44 tolerated(0.05) possibly_damaging(0.605) TCGA-D3-A5GO-06 21 41561058 41561058 C T DSCAM Missense_Mutation p.E822K 0.41 tolerated(0.19) probably_damaging(0.98) TCGA-D3-A5GO-06 21 41711115 41711115 C T DSCAM Missense_Mutation p.G480R 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 21 41711173 41711173 C T DSCAM Silent p.T460T 0.49 TCGA-D3-A5GO-06 21 44283566 44283566 G A WDR4 Missense_Mutation p.S146F 0.42 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A5GO-06 21 44836750 44836750 G A SIK1 Missense_Mutation p.P742S 0.32 tolerated_low_confidence(0.32) probably_damaging(0.996) TCGA-D3-A5GO-06 21 45379527 45379527 C T AGPAT3 5'UTR 0.43 TCGA-D3-A5GO-06 21 46916415 46916415 G A COL18A1 Missense_Mutation p.G1017E 0.39 probably_damaging(0.992) TCGA-D3-A5GO-06 21 47971644 47971644 C T DIP2A Silent p.D979D 0.26 TCGA-D3-A5GO-06 22 17308603 17308603 C T HSFY1P1 RNA 0.24 TCGA-D3-A5GO-06 22 18065388 18065388 G A SLC25A18 Missense_Mutation p.D87N 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 22 18613784 18613784 G A TUBA8 Missense_Mutation p.E411K 0.40 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D3-A5GO-06 22 19028787 19028787 G A DGCR2 Missense_Mutation p.R394C 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GO-06 22 19319035 19319035 G A HIRA Silent p.I994I 0.17 TCGA-D3-A5GO-06 22 19463094 19463094 G A UFD1L Missense_Mutation p.P12L 0.44 deleterious(0.04) benign(0.008) TCGA-D3-A5GO-06 22 21141180 21141180 G A SERPIND1 Silent p.T442T 0.45 TCGA-D3-A5GO-06 22 21470386 21470386 G A KB-1592A4.15 RNA 0.12 TCGA-D3-A5GO-06 22 21799618 21799618 C T HIC2 Missense_Mutation p.P145L 0.47 deleterious(0.01) possibly_damaging(0.713) TCGA-D3-A5GO-06 22 21800043 21800043 C T HIC2 Missense_Mutation p.P287S 0.40 tolerated(0.73) benign(0.053) TCGA-D3-A5GO-06 22 21947178 21947178 T C UBE2L3 Missense_Mutation p.M77T 0.47 tolerated(0.35) benign(0.081) TCGA-D3-A5GO-06 22 21984272 21984272 G A YDJC Missense_Mutation p.T11I 0.09 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GO-06 22 22730818 22730818 C T IGLV5-45 Missense_Mutation p.L105F 0.26 deleterious(0) possibly_damaging(0.597) TCGA-D3-A5GO-06 22 23603672 23603672 C T BCR Missense_Mutation p.P566L 0.41 deleterious(0) probably_damaging(0.975) TCGA-D3-A5GO-06 22 24463103 24463103 G T CABIN1 Nonsense_Mutation p.E735* 0.36 TCGA-D3-A5GO-06 22 24730521 24730521 C T SPECC1L Missense_Mutation p.S847F 0.48 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 22 26166140 26166140 C T MYO18B Missense_Mutation p.L526F 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A5GO-06 22 26219498 26219498 G A MYO18B Missense_Mutation p.E850K 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 22 26400815 26400815 G A MYO18B Missense_Mutation p.S2155N 0.39 tolerated(0.07) benign(0.015) TCGA-D3-A5GO-06 22 29446917 29446917 C T ZNRF3 Silent p.T916T 0.70 TCGA-D3-A5GO-06 22 32550253 32550253 C T C22orf42 Silent p.G95G 0.64 TCGA-D3-A5GO-06 22 37462952 37462952 C T TMPRSS6 Missense_Mutation p.D731N 0.61 tolerated(0.05) benign(0.35) TCGA-D3-A5GO-06 22 38245427 38245427 T C EIF3L 5'UTR 0.73 TCGA-D3-A5GO-06 22 38541473 38541473 C T PLA2G6 Missense_Mutation p.E133K 0.76 deleterious(0.01) possibly_damaging(0.838) TCGA-D3-A5GO-06 22 41738568 41738568 C T ZC3H7B Silent p.I411I 0.58 TCGA-D3-A5GO-06 22 42422829 42422829 C T WBP2NL Missense_Mutation p.P192S 0.66 tolerated(0.25) possibly_damaging(0.548) TCGA-D3-A5GO-06 22 42912125 42912125 G A RRP7A Silent p.L78L 0.69 TCGA-D3-A5GO-06 22 45312165 45312165 T C PHF21B Missense_Mutation p.N187D 0.68 tolerated_low_confidence(0.08) benign(0.003) TCGA-D3-A5GO-06 22 45802416 45802416 C T SMC1B Silent p.E180E 0.61 TCGA-D3-A5GO-06 22 50957717 50957717 C T NCAPH2 Silent p.L277L 0.62 TCGA-D3-A5GO-06 22 51178266 51178266 C T ACR Silent p.D142D 0.70 TCGA-D3-A5GO-06 2 101654122 101654122 C A TBC1D8 Missense_Mutation p.G427W 0.35 deleterious(0.02) possibly_damaging(0.682) TCGA-D3-A5GO-06 2 102626066 102626066 G C IL1R2 Missense_Mutation p.R37P 0.36 tolerated(0.3) benign(0.063) TCGA-D3-A5GO-06 2 102835496 102835496 G A IL1RL2 Missense_Mutation p.V270M 0.40 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 2 103121827 103121827 G A SLC9A4 Silent p.L365L 0.30 TCGA-D3-A5GO-06 2 103274201 103274201 C T SLC9A2 Silent p.F156F 0.39 TCGA-D3-A5GO-06 2 103322349 103322349 G A SLC9A2 Silent p.T674T 0.36 TCGA-D3-A5GO-06 2 10583845 10583845 G A ODC1 Silent p.I189I 0.24 TCGA-D3-A5GO-06 2 107029606 107029606 G A RGPD3 Missense_Mutation p.P1734S 0.37 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-D3-A5GO-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.21 tolerated(0.11) benign(0.012) TCGA-D3-A5GO-06 2 1079275 1079275 G A SNTG2 Silent p.T48T 0.26 TCGA-D3-A5GO-06 2 108496528 108496528 G A RGPD4 Missense_Mutation p.E1677K 0.19 deleterious_low_confidence(0.02) benign(0.07) TCGA-D3-A5GO-06 2 108507259 108507259 G A RGPD4 3'UTR 0.11 TCGA-D3-A5GO-06 2 108627177 108627177 G A SLC5A7 Missense_Mutation p.E535K 0.42 tolerated(0.48) benign(0.007) TCGA-D3-A5GO-06 2 111542359 111542359 C T ACOXL Silent p.V42V 0.27 TCGA-D3-A5GO-06 2 112944801 112944801 C T FBLN7 Silent p.S346S 0.42 TCGA-D3-A5GO-06 2 113509850 113509850 G A CKAP2L Silent p.I532I 0.46 TCGA-D3-A5GO-06 2 113588124 113588124 C T IL1B Silent p.K208K 0.40 TCGA-D3-A5GO-06 2 113832286 113832286 C T IL1F10 Intron 0.18 TCGA-D3-A5GO-06 2 113832414 113832414 C T IL1F10 Missense_Mutation p.S78F 0.47 tolerated(0.06) benign(0.417) TCGA-D3-A5GO-06 2 114257523 114257523 C T FOXD4L1 Silent p.P230P 0.42 TCGA-D3-A5GO-06 2 120003271 120003271 C T STEAP3 Silent p.L77L 0.35 TCGA-D3-A5GO-06 2 120834850 120834850 C T EPB41L5 Silent p.A224A 0.52 TCGA-D3-A5GO-06 2 121743920 121743920 C T GLI2 Missense_Mutation p.P675S 0.38 tolerated(0.64) probably_damaging(0.998) TCGA-D3-A5GO-06 2 121743921 121743921 C T GLI2 Missense_Mutation p.P675L 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A5GO-06 2 128341776 128341776 G A MYO7B Missense_Mutation p.E475K 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A5GO-06 2 128341877 128341877 C T MYO7B Silent p.S508S 0.27 TCGA-D3-A5GO-06 2 128389307 128389307 A T MYO7B Missense_Mutation p.Q1717L 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 2 128471302 128471302 G A WDR33 Missense_Mutation p.P1055S 0.37 tolerated_low_confidence(0.11) possibly_damaging(0.699) TCGA-D3-A5GO-06 2 129026036 129026036 G A HS6ST1 Silent p.F312F 0.61 TCGA-D3-A5GO-06 2 130832362 130832362 C T POTEF Missense_Mutation p.E895K 0.72 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-D3-A5GO-06 2 133486462 133486462 C T NCKAP5 Missense_Mutation p.G1836E 0.37 tolerated(1) benign(0) TCGA-D3-A5GO-06 2 133539526 133539526 C T NCKAP5 Missense_Mutation p.E1620K 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 2 133542279 133542279 G A NCKAP5 Missense_Mutation p.P702L 0.42 tolerated(0.26) benign(0.013) TCGA-D3-A5GO-06 2 136567238 136567238 G A LCT Silent p.F893F 0.36 TCGA-D3-A5GO-06 2 136570043 136570043 C T LCT Missense_Mutation p.G731R 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 2 138000072 138000072 C T THSD7B Silent p.L732L 0.20 TCGA-D3-A5GO-06 2 138425405 138425405 C T THSD7B Silent p.F1574F 0.36 TCGA-D3-A5GO-06 2 141459861 141459861 C T LRP1B Missense_Mutation p.E2051K 0.17 benign(0.292) TCGA-D3-A5GO-06 2 141460033 141460033 C T LRP1B Missense_Mutation p.G2038E 0.33 probably_damaging(0.982) TCGA-D3-A5GO-06 2 1488578 1488578 C T TPO Silent p.L517L 0.20 TCGA-D3-A5GO-06 2 150071339 150071339 G A LYPD6B 3'UTR 0.31 TCGA-D3-A5GO-06 2 152320961 152320961 C T RIF1 Missense_Mutation p.P1643S 0.24 tolerated(1) benign(0.001) TCGA-D3-A5GO-06 2 152381774 152381774 T A NEB Missense_Mutation p.K7392M 0.42 probably_damaging(0.995) TCGA-D3-A5GO-06 2 152420423 152420423 C T NEB Missense_Mutation p.E6165K 0.27 possibly_damaging(0.714) TCGA-D3-A5GO-06 2 152432773 152432773 G A NEB Silent p.I5600I 0.38 TCGA-D3-A5GO-06 2 153000417 153000417 A T STAM2 Missense_Mutation p.L210I 0.50 tolerated(0.25) probably_damaging(0.999) TCGA-D3-A5GO-06 2 159488277 159488277 C T PKP4 Missense_Mutation p.S389F 0.44 deleterious(0) probably_damaging(0.968) TCGA-D3-A5GO-06 2 160876730 160876730 G A PLA2R1 Missense_Mutation p.P447S 0.41 tolerated(0.31) possibly_damaging(0.859) TCGA-D3-A5GO-06 2 166870396 166870396 C T SCN1A Missense_Mutation p.R1188K 0.41 tolerated(0.41) benign(0.026) TCGA-D3-A5GO-06 2 167263129 167263129 G A SCN7A Missense_Mutation p.S1337F 0.31 deleterious(0.03) benign(0.048) TCGA-D3-A5GO-06 2 167760381 167760381 C T XIRP2 Missense_Mutation p.P130L 0.37 benign(0.008) TCGA-D3-A5GO-06 2 168100015 168100015 G A XIRP2 Missense_Mutation p.G705R 0.43 possibly_damaging(0.67) TCGA-D3-A5GO-06 2 170058150 170058150 C T LRP2 Missense_Mutation p.E2814K 0.36 probably_damaging(1) TCGA-D3-A5GO-06 2 170366325 170366325 C T KLHL41 Missense_Mutation p.L13F 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A5GO-06 2 17699064 17699064 C T RAD51AP2 Missense_Mutation p.E207K 0.13 tolerated(0.06) benign(0.182) TCGA-D3-A5GO-06 2 179407270 179407270 C T TTN Missense_Mutation p.G32405R 0.49 TCGA-D3-A5GO-06 2 179408342 179408342 C T TTN Missense_Mutation p.D32120N 0.48 TCGA-D3-A5GO-06 2 179432270 179432270 G A TTN Missense_Mutation p.P26197S 0.39 TCGA-D3-A5GO-06 2 179432597 179432597 G A TTN Missense_Mutation p.P26088S 0.30 TCGA-D3-A5GO-06 2 179436060 179436060 G A TTN Silent p.I24933I 0.35 TCGA-D3-A5GO-06 2 179438775 179438775 C T TTN Silent p.K24028K 0.25 TCGA-D3-A5GO-06 2 179465822 179465822 C T TTN Silent p.P18603P 0.29 TCGA-D3-A5GO-06 2 179466495 179466495 G A TTN Missense_Mutation p.S18441F 0.36 TCGA-D3-A5GO-06 2 179474445 179474445 C T TTN Silent p.R17235R 0.40 TCGA-D3-A5GO-06 2 179482566 179482566 G A TTN Nonsense_Mutation p.R15838* 0.38 TCGA-D3-A5GO-06 2 179498800 179498800 C T TTN Silent p.L14142L 0.36 TCGA-D3-A5GO-06 2 179515513 179515513 G A TTN Missense_Mutation p.P13225L 0.25 TCGA-D3-A5GO-06 2 179534944 179534944 C T TTN Splice_Site p.X11796_splice 0.39 TCGA-D3-A5GO-06 2 179560117 179560117 G A TTN Missense_Mutation p.P10410S 0.45 TCGA-D3-A5GO-06 2 179567356 179567356 G A TTN Silent p.N10086N 0.28 TCGA-D3-A5GO-06 2 179588342 179588342 C T TTN Missense_Mutation p.G7162E 0.44 TCGA-D3-A5GO-06 2 179613170 179613170 C T TTN Intron 0.42 TCGA-D3-A5GO-06 2 179615370 179615370 G A TTN Intron 0.32 TCGA-D3-A5GO-06 2 179629430 179629430 G A TTN Missense_Mutation p.S3271F 0.34 TCGA-D3-A5GO-06 2 179640866 179640866 C T TTN Missense_Mutation p.E1909K 0.37 TCGA-D3-A5GO-06 2 179665129 179665129 C T TTN Silent p.L192L 0.45 TCGA-D3-A5GO-06 2 179666924 179666924 G A TTN Missense_Mutation p.S79F 0.35 TCGA-D3-A5GO-06 2 182339987 182339987 G A ITGA4 Silent p.L176L 0.32 TCGA-D3-A5GO-06 2 182403989 182403989 G A CERKL Silent p.F482F 0.49 TCGA-D3-A5GO-06 2 182413434 182413434 G A CERKL Missense_Mutation p.A375V 0.44 deleterious(0) possibly_damaging(0.896) TCGA-D3-A5GO-06 2 183066221 183066221 G A PDE1A Missense_Mutation p.S373F 0.47 deleterious(0.03) benign(0.075) TCGA-D3-A5GO-06 2 185801664 185801664 G A ZNF804A Missense_Mutation p.G514E 0.35 tolerated(1) probably_damaging(0.998) TCGA-D3-A5GO-06 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.51 deleterious(0) probably_damaging(0.953) TCGA-D3-A5GO-06 2 185802568 185802568 A G ZNF804A Silent p.K815K 0.51 TCGA-D3-A5GO-06 2 189849483 189849483 C T COL3A1 Intron 0.37 TCGA-D3-A5GO-06 2 189864581 189864581 G A COL3A1 Missense_Mutation p.G748D 0.53 unknown(0) TCGA-D3-A5GO-06 2 189926320 189926320 C T COL5A2 Missense_Mutation p.E667K 0.34 benign(0.349) TCGA-D3-A5GO-06 2 190428502 190428502 G A SLC40A1 Missense_Mutation p.P404S 0.42 tolerated(0.45) benign(0.088) TCGA-D3-A5GO-06 2 191524716 191524716 C T NAB1 Missense_Mutation p.H272Y 0.43 deleterious(0) possibly_damaging(0.809) TCGA-D3-A5GO-06 2 1926121 1926121 G A MYT1L Missense_Mutation p.P474S 0.51 tolerated(0.7) benign(0.004) TCGA-D3-A5GO-06 2 196620890 196620890 C T DNAH7 Silent p.V3851V 0.22 TCGA-D3-A5GO-06 2 196729151 196729151 C T DNAH7 Missense_Mutation p.E2410K 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 2 196759830 196759830 G A DNAH7 Missense_Mutation p.S1589F 0.38 deleterious(0.01) benign(0.01) TCGA-D3-A5GO-06 2 197586282 197586282 G A CCDC150 Missense_Mutation p.E766K 0.47 tolerated(0.13) probably_damaging(0.958) TCGA-D3-A5GO-06 2 197708730 197708730 G A PGAP1 Missense_Mutation p.R803C 0.33 tolerated(0.07) benign(0.001) TCGA-D3-A5GO-06 2 20647846 20647846 C T RHOB 3'UTR 0.42 TCGA-D3-A5GO-06 2 206581035 206581035 T C NRP2 Missense_Mutation p.F124L 0.48 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A5GO-06 2 206590788 206590788 C T NRP2 Silent p.S324S 0.36 TCGA-D3-A5GO-06 2 209025690 209025690 G A CRYGA Silent p.I121I 0.37 TCGA-D3-A5GO-06 2 209027999 209027999 C T CRYGA Missense_Mutation p.G61S 0.41 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GO-06 2 209028143 209028143 G A CRYGA Nonsense_Mutation p.Q13* 0.29 TCGA-D3-A5GO-06 2 209110041 209110041 A G IDH1 Splice_Site p.X174_splice 0.39 TCGA-D3-A5GO-06 2 211163274 211163274 T A MYL1 Silent p.A58A 0.19 TCGA-D3-A5GO-06 2 211163277 211163277 C T MYL1 Silent p.E57E 0.20 TCGA-D3-A5GO-06 2 211471650 211471650 C T CPS1 Missense_Mutation p.A732V 0.35 deleterious(0) probably_damaging(0.96) TCGA-D3-A5GO-06 2 21232835 21232835 C T APOB Missense_Mutation p.G2302E 0.40 benign(0.002) TCGA-D3-A5GO-06 2 216809596 216809596 G A MREG Missense_Mutation p.P212L 0.40 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-D3-A5GO-06 2 217315660 217315660 C T SMARCAL1 Missense_Mutation p.S648F 0.42 deleterious(0) probably_damaging(0.948) TCGA-D3-A5GO-06 2 218682615 218682615 G A TNS1 Silent p.A1376A 0.23 TCGA-D3-A5GO-06 2 218999717 218999717 G A CXCR2 Missense_Mutation p.G65R 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 2 219254649 219254649 C T SLC11A1 Silent p.F284F 0.38 TCGA-D3-A5GO-06 2 219294109 219294109 G A VIL1 Missense_Mutation p.M223I 0.31 deleterious(0.03) benign(0.133) TCGA-D3-A5GO-06 2 219483376 219483376 C T PLCD4 Missense_Mutation p.P86S 0.31 deleterious(0.05) probably_damaging(1) TCGA-D3-A5GO-06 2 219874667 219874667 C T CCDC108 Silent p.G1483G 0.38 TCGA-D3-A5GO-06 2 220354624 220354624 C T SPEG Missense_Mutation p.P2962S 0.55 benign(0.309) TCGA-D3-A5GO-06 2 220355280 220355280 C T SPEG Missense_Mutation p.S3024F 0.44 possibly_damaging(0.789) TCGA-D3-A5GO-06 2 220470753 220470753 C T STK11IP Missense_Mutation p.P285L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 2 222437007 222437007 C T EPHA4 5'UTR 0.42 TCGA-D3-A5GO-06 2 222437008 222437008 C T EPHA4 5'UTR 0.42 TCGA-D3-A5GO-06 2 228172615 228172615 G A COL4A3 Missense_Mutation p.R1481Q 0.39 unknown(0) TCGA-D3-A5GO-06 2 228881601 228881601 G A SPHKAP Silent p.I1323I 0.32 TCGA-D3-A5GO-06 2 228881722 228881722 G A SPHKAP Missense_Mutation p.S1283F 0.39 deleterious(0) possibly_damaging(0.655) TCGA-D3-A5GO-06 2 228882732 228882732 C T SPHKAP Silent p.A946A 0.33 TCGA-D3-A5GO-06 2 229890441 229890441 C T PID1 Silent p.R218R 0.40 TCGA-D3-A5GO-06 2 230911259 230911259 G A SLC16A14 Nonsense_Mutation p.Q195* 0.38 TCGA-D3-A5GO-06 2 231159024 231159024 G A SP140 Silent p.R669R 0.32 TCGA-D3-A5GO-06 2 231176257 231176257 G A SP140 Missense_Mutation p.G818R 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A5GO-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.48 TCGA-D3-A5GO-06 2 233995348 233995348 G A INPP5D Missense_Mutation p.E219K 0.46 tolerated(0.49) benign(0.182) TCGA-D3-A5GO-06 2 234678194 234678194 G A UGT1A10 Intron 0.34 TCGA-D3-A5GO-06 2 240969247 240969247 G A OR6B2 Silent p.F200F 0.54 TCGA-D3-A5GO-06 2 241976654 241976654 C T SNED1 Intron 0.39 TCGA-D3-A5GO-06 2 242080067 242080067 C T PASK Missense_Mutation p.E100K 0.41 tolerated(0.11) benign(0.019) TCGA-D3-A5GO-06 2 242396268 242396268 C T FARP2 Silent p.S506S 0.34 TCGA-D3-A5GO-06 2 24509190 24509190 G A ITSN2 Missense_Mutation p.S585L 0.47 tolerated(0.6) unknown(0) TCGA-D3-A5GO-06 2 26667169 26667169 A G DRC1 Missense_Mutation p.T370A 0.21 tolerated(0.56) benign(0.018) TCGA-D3-A5GO-06 2 26781365 26781365 G A OTOF Silent p.F25F 0.50 TCGA-D3-A5GO-06 2 27302058 27302058 G A EMILIN1 Missense_Mutation p.G42E 0.27 probably_damaging(1) TCGA-D3-A5GO-06 2 27324395 27324395 G A CGREF1 Missense_Mutation p.A235V 0.28 tolerated(0.31) possibly_damaging(0.739) TCGA-D3-A5GO-06 2 27446839 27446839 C T CAD Silent p.F350F 0.48 TCGA-D3-A5GO-06 2 27830724 27830724 C T ZNF512 Missense_Mutation p.P317S 0.19 tolerated(0.2) probably_damaging(0.996) TCGA-D3-A5GO-06 2 29397396 29397396 C T CLIP4 Intron 0.40 TCGA-D3-A5GO-06 2 29606609 29606609 T C ALK Missense_Mutation p.N424S 0.21 deleterious(0.02) possibly_damaging(0.613) TCGA-D3-A5GO-06 2 31010083 31010083 C A CAPN13 Missense_Mutation p.D37Y 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 2 32768346 32768346 G A BIRC6 Silent p.K4110K 0.44 TCGA-D3-A5GO-06 2 3624082 3624082 T A RPS7 Silent p.I51I 0.17 TCGA-D3-A5GO-06 2 3726132 3726132 G A ALLC Silent p.R53R 0.18 TCGA-D3-A5GO-06 2 37502923 37502923 G A PRKD3 Missense_Mutation p.S454L 0.38 deleterious(0.01) benign(0.105) TCGA-D3-A5GO-06 2 38201340 38201340 C T RMDN2 Missense_Mutation p.R382C 0.46 tolerated(1) benign(0) TCGA-D3-A5GO-06 2 39893167 39893167 C T TMEM178A Missense_Mutation p.S18F 0.54 deleterious(0) benign(0.384) TCGA-D3-A5GO-06 2 43871859 43871859 G A PLEKHH2 Missense_Mutation p.R16Q 0.47 deleterious(0) possibly_damaging(0.76) TCGA-D3-A5GO-06 2 44617386 44617386 T C CAMKMT Silent p.N106N 0.25 TCGA-D3-A5GO-06 2 48925816 48925816 G A LHCGR Silent p.L268L 0.48 TCGA-D3-A5GO-06 2 55566639 55566639 G A CCDC88A Silent p.I493I 0.44 TCGA-D3-A5GO-06 2 61009027 61009027 C T PAPOLG Missense_Mutation p.P305L 0.19 tolerated(0.13) benign(0.064) TCGA-D3-A5GO-06 2 62065718 62065718 T A FAM161A Missense_Mutation p.H569L 0.64 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GO-06 2 64176286 64176286 G A VPS54 Missense_Mutation p.S341L 0.50 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A5GO-06 2 70377398 70377398 G A C2orf42 3'UTR 0.69 TCGA-D3-A5GO-06 2 70377399 70377399 G A C2orf42 3'UTR 0.69 TCGA-D3-A5GO-06 2 71576784 71576784 C T ZNF638 Missense_Mutation p.P234S 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A5GO-06 2 71901333 71901333 T C DYSF Missense_Mutation p.F1931L 0.38 tolerated(0.07) probably_damaging(0.95) TCGA-D3-A5GO-06 2 74042651 74042651 G A C2orf78 Missense_Mutation p.G434E 0.36 tolerated(0.35) benign(0.109) TCGA-D3-A5GO-06 2 74452038 74452038 C T SLC4A5 Missense_Mutation p.E1075K 0.40 deleterious(0.02) benign(0.317) TCGA-D3-A5GO-06 2 74462256 74462256 G A SLC4A5 Missense_Mutation p.P802L 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 2 74466470 74466470 G A SLC4A5 Missense_Mutation p.P771S 0.38 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A5GO-06 2 74477521 74477521 G A SLC4A5 Silent p.T534T 0.13 TCGA-D3-A5GO-06 2 74757402 74757402 C T HTRA2 Missense_Mutation p.T90I 0.37 tolerated(0.17) benign(0.001) TCGA-D3-A5GO-06 2 79255413 79255413 A T REG3G 3'UTR 0.36 TCGA-D3-A5GO-06 2 79255414 79255414 A G REG3G 3'UTR 0.36 TCGA-D3-A5GO-06 2 85097363 85097363 A G TRABD2A Silent p.L219L 0.30 TCGA-D3-A5GO-06 2 86090553 86090553 G A ST3GAL5 Silent p.S46S 0.28 TCGA-D3-A5GO-06 2 89417306 89417306 C T IGKV1-17 Translation_Start_Site p.M1? 0.27 tolerated_low_confidence(0.05) benign(0.24) TCGA-D3-A5GO-06 2 89513063 89513063 G A IGKV1-27 Missense_Mutation p.P66S 0.35 deleterious(0.01) possibly_damaging(0.886) TCGA-D3-A5GO-06 2 95497757 95497757 C T ANKRD20A8P RNA 0.37 TCGA-D3-A5GO-06 2 98378574 98378574 G A TMEM131 Missense_Mutation p.P1605S 0.37 tolerated_low_confidence(0.28) benign(0.042) TCGA-D3-A5GO-06 3 102171970 102171970 G A ZPLD1 Missense_Mutation p.G121E 0.39 deleterious(0.02) benign(0.222) TCGA-D3-A5GO-06 3 102175135 102175135 C T ZPLD1 Silent p.I158I 0.43 TCGA-D3-A5GO-06 3 105400333 105400333 G A CBLB Silent p.I806I 0.29 TCGA-D3-A5GO-06 3 105400547 105400547 G A CBLB Intron 0.54 TCGA-D3-A5GO-06 3 107492197 107492197 C T BBX Silent p.S543S 0.39 TCGA-D3-A5GO-06 3 108117636 108117636 C T MYH15 Missense_Mutation p.E1681K 0.34 deleterious(0.03) possibly_damaging(0.755) TCGA-D3-A5GO-06 3 108295124 108295124 A G KIAA1524 Silent p.S296S 0.38 TCGA-D3-A5GO-06 3 108295125 108295125 G A KIAA1524 Missense_Mutation p.S296F 0.37 deleterious(0.01) benign(0.193) TCGA-D3-A5GO-06 3 109027927 109027927 C T DPPA2 Splice_Site p.X115_splice 0.36 TCGA-D3-A5GO-06 3 11070523 11070523 T C SLC6A1 Missense_Mutation p.I394T 0.39 deleterious(0) benign(0.054) TCGA-D3-A5GO-06 3 111799810 111799810 G A TMPRSS7 Nonsense_Mutation p.W678* 0.41 TCGA-D3-A5GO-06 3 113172416 113172416 G A SPICE1 Missense_Mutation p.S680L 0.31 deleterious(0.02) benign(0.05) TCGA-D3-A5GO-06 3 121351032 121351032 C T HCLS1 Splice_Site p.X414_splice 0.31 TCGA-D3-A5GO-06 3 121725893 121725893 C T ILDR1 Silent p.V58V 0.47 TCGA-D3-A5GO-06 3 121981132 121981132 C T CASR Missense_Mutation p.S417F 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A5GO-06 3 122003902 122003902 G A CASR Missense_Mutation p.G1044E 0.39 tolerated_low_confidence(0.58) benign(0.001) TCGA-D3-A5GO-06 3 124567295 124567295 G A ITGB5 Missense_Mutation p.R158W 0.50 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GO-06 3 124567296 124567296 G A ITGB5 Silent p.I157I 0.50 TCGA-D3-A5GO-06 3 125876190 125876190 C T ALDH1L1 Missense_Mutation p.G185E 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A5GO-06 3 1269557 1269557 G A CNTN6 Missense_Mutation p.D80N 0.40 tolerated(0.64) possibly_damaging(0.511) TCGA-D3-A5GO-06 3 127965702 127965702 A T EEFSEC Missense_Mutation p.M114L 0.40 tolerated(0.49) benign(0.009) TCGA-D3-A5GO-06 3 12858301 12858301 G A CAND2 Missense_Mutation p.E624K 0.32 deleterious(0) possibly_damaging(0.682) TCGA-D3-A5GO-06 3 132063785 132063785 C T ACPP Silent p.F221F 0.39 TCGA-D3-A5GO-06 3 132229920 132229920 G A DNAJC13 Missense_Mutation p.A1709T 0.35 tolerated(0.55) benign(0.017) TCGA-D3-A5GO-06 3 133098622 133098622 G A TMEM108 Missense_Mutation p.E23K 0.41 tolerated_low_confidence(0.13) benign(0.008) TCGA-D3-A5GO-06 3 13361447 13361447 G A NUP210 Silent p.F1733F 0.37 TCGA-D3-A5GO-06 3 134278111 134278111 C T CEP63 Missense_Mutation p.P598L 0.42 deleterious(0.04) benign(0.382) TCGA-D3-A5GO-06 3 138762806 138762806 G A PRR23C Silent p.F219F 0.33 TCGA-D3-A5GO-06 3 139181066 139181066 C T RBP2 Missense_Mutation p.G47D 0.43 deleterious(0.02) benign(0.226) TCGA-D3-A5GO-06 3 140282931 140282931 G A CLSTN2 Missense_Mutation p.E871K 0.37 deleterious(0) benign(0.265) TCGA-D3-A5GO-06 3 140866275 140866275 G A SPSB4 3'UTR 0.44 TCGA-D3-A5GO-06 3 1424997 1424997 G A CNTN6 Missense_Mutation p.G808R 0.41 tolerated(0.96) benign(0.069) TCGA-D3-A5GO-06 3 14536360 14536360 C T GRIP2 RNA 0.38 TCGA-D3-A5GO-06 3 14712622 14712622 C T CCDC174 Missense_Mutation p.P442L 0.37 tolerated(0.09) benign(0.017) TCGA-D3-A5GO-06 3 14803013 14803013 C T C3orf20 Missense_Mutation p.R796C 0.30 tolerated(1) benign(0.001) TCGA-D3-A5GO-06 3 149290772 149290772 G A WWTR1 Silent p.I149I 0.35 TCGA-D3-A5GO-06 3 150644582 150644582 C T CLRN1 3'Flank 0.37 TCGA-D3-A5GO-06 3 151056565 151056565 G A P2RY12 Silent p.I23I 0.33 TCGA-D3-A5GO-06 3 151501972 151501972 C T RP11-454C18.2 Intron 0.56 TCGA-D3-A5GO-06 3 154855984 154855984 G A MME Missense_Mutation p.E272K 0.45 deleterious(0) possibly_damaging(0.905) TCGA-D3-A5GO-06 3 154864963 154864963 C T MME Missense_Mutation p.P483S 0.26 tolerated(0.18) benign(0.239) TCGA-D3-A5GO-06 3 155241715 155241715 C T PLCH1 Missense_Mutation p.E469K 0.38 deleterious(0) possibly_damaging(0.685) TCGA-D3-A5GO-06 3 155311831 155311831 G A PLCH1 Silent p.S111S 0.44 TCGA-D3-A5GO-06 3 155481320 155481320 G A C3orf33 Missense_Mutation p.R248C 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.809) TCGA-D3-A5GO-06 3 15621479 15621479 G A HACL1 Silent p.T247T 0.41 TCGA-D3-A5GO-06 3 161214933 161214933 G A OTOL1 Missense_Mutation p.G113E 0.43 deleterious(0.02) unknown(0) TCGA-D3-A5GO-06 3 164716450 164716450 T C SI Missense_Mutation p.K1473R 0.35 tolerated(0.19) benign(0.053) TCGA-D3-A5GO-06 3 167189480 167189480 G A SERPINI2 Missense_Mutation p.S48L 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 3 169664211 169664211 C T RP11-379K17.4 RNA 0.40 TCGA-D3-A5GO-06 3 169664630 169664630 C T RP11-379K17.4 RNA 0.44 TCGA-D3-A5GO-06 3 17131373 17131373 C T PLCL2 Missense_Mutation p.P992L 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.474) TCGA-D3-A5GO-06 3 172834968 172834968 G A SPATA16 Missense_Mutation p.S185F 0.46 tolerated(0.14) possibly_damaging(0.683) TCGA-D3-A5GO-06 3 183695342 183695342 G A ABCC5 Missense_Mutation p.S456F 0.34 deleterious(0) benign(0.444) TCGA-D3-A5GO-06 3 183777667 183777667 C T HTR3C Missense_Mutation p.T326I 0.38 deleterious(0) possibly_damaging(0.868) TCGA-D3-A5GO-06 3 184039114 184039114 C T EIF4G1 Missense_Mutation p.P255S 0.27 tolerated(0.36) benign(0.004) TCGA-D3-A5GO-06 3 18438769 18438769 G A SATB1 Missense_Mutation p.S218F 0.42 deleterious(0) probably_damaging(0.937) TCGA-D3-A5GO-06 3 185229381 185229381 G A LIPH Missense_Mutation p.S400F 0.39 deleterious(0) possibly_damaging(0.62) TCGA-D3-A5GO-06 3 186395022 186395022 C T HRG Missense_Mutation p.P310S 0.45 tolerated(0.06) possibly_damaging(0.641) TCGA-D3-A5GO-06 3 189349307 189349307 G A TP63 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0.004) TCGA-D3-A5GO-06 3 189584501 189584501 G A TP63 Missense_Mutation p.R266Q 0.40 deleterious(0.02) benign(0.116) TCGA-D3-A5GO-06 3 195452027 195452027 C T MUC20 Missense_Mutation p.P185S 0.68 tolerated_low_confidence(0.06) possibly_damaging(0.81) TCGA-D3-A5GO-06 3 19926050 19926050 G A EFHB Missense_Mutation p.T664I 0.24 tolerated(0.18) benign(0.002) TCGA-D3-A5GO-06 3 26751332 26751332 G A LRRC3B Missense_Mutation p.E57K 0.31 tolerated(0.07) probably_damaging(0.946) TCGA-D3-A5GO-06 3 27326180 27326180 G A NEK10 Nonsense_Mutation p.R643* 0.44 TCGA-D3-A5GO-06 3 30713877 30713877 C T TGFBR2 Missense_Mutation p.S426F 0.40 deleterious(0) probably_damaging(0.981) TCGA-D3-A5GO-06 3 32933207 32933207 C G TRIM71 Silent p.G837G 0.41 TCGA-D3-A5GO-06 3 35833953 35833953 G A ARPP21 Silent p.V705V 0.49 TCGA-D3-A5GO-06 3 36873775 36873775 G A TRANK1 Silent p.F2389F 0.38 TCGA-D3-A5GO-06 3 36874626 36874626 C T TRANK1 Missense_Mutation p.E2106K 0.41 tolerated(0.16) benign(0.283) TCGA-D3-A5GO-06 3 36898776 36898776 C T TRANK1 Missense_Mutation p.D769N 0.44 tolerated(0.39) benign(0.004) TCGA-D3-A5GO-06 3 38622577 38622577 C T SCN5A Missense_Mutation p.E1025K 0.21 tolerated(0.46) probably_damaging(0.997) TCGA-D3-A5GO-06 3 38629035 38629035 C T SCN5A Missense_Mutation p.M764I 0.26 deleterious(0) benign(0.209) TCGA-D3-A5GO-06 3 38739372 38739372 G A SCN10A Missense_Mutation p.P1780L 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 3 38770294 38770294 G A SCN10A Silent p.I793I 0.47 TCGA-D3-A5GO-06 3 39184651 39184651 G A CSRNP1 Silent p.S555S 0.42 TCGA-D3-A5GO-06 3 42229622 42229622 C T TRAK1 Missense_Mutation p.S189F 0.47 deleterious(0) probably_damaging(0.914) TCGA-D3-A5GO-06 3 42264848 42264848 C T TRAK1 Silent p.V827V 0.57 TCGA-D3-A5GO-06 3 42906351 42906351 G A ACKR2 Missense_Mutation p.M119I 0.36 tolerated(0.28) benign(0.009) TCGA-D3-A5GO-06 3 44540638 44540638 C T ZNF852 Silent p.%3D 0.27 TCGA-D3-A5GO-06 3 44948573 44948573 G A TGM4 Missense_Mutation p.G403E 0.31 tolerated(0.14) benign(0.105) TCGA-D3-A5GO-06 3 45000782 45000782 G A ZDHHC3 Silent p.I49I 0.41 TCGA-D3-A5GO-06 3 46063269 46063269 C T XCR1 Silent p.V57V 0.49 TCGA-D3-A5GO-06 3 47030761 47030761 C T NBEAL2 Silent p.C121C 0.37 TCGA-D3-A5GO-06 3 4859775 4859775 G A ITPR1 Missense_Mutation p.R2611K 0.35 deleterious(0) benign(0.025) TCGA-D3-A5GO-06 3 49049488 49049488 C T WDR6 Missense_Mutation p.T204I 0.37 tolerated(0.13) benign(0.005) TCGA-D3-A5GO-06 3 49066696 49066696 G A IMPDH2 Missense_Mutation p.L30F 0.24 deleterious(0.04) probably_damaging(0.969) TCGA-D3-A5GO-06 3 49155168 49155168 G A USP19 Missense_Mutation p.R132C 0.50 tolerated_low_confidence(0.07) benign(0.164) TCGA-D3-A5GO-06 3 49160884 49160884 G A LAMB2 Silent p.F1326F 0.33 TCGA-D3-A5GO-06 3 49738092 49738092 C T RNF123 Silent p.I409I 0.39 TCGA-D3-A5GO-06 3 50140565 50140565 C T RBM5 Missense_Mutation p.P178L 0.33 deleterious(0) benign(0.421) TCGA-D3-A5GO-06 3 50232275 50232275 G A GNAT1 Missense_Mutation p.E314K 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GO-06 3 50332361 50332361 G A HYAL3 Missense_Mutation p.L225F 0.38 tolerated(0.16) possibly_damaging(0.601) TCGA-D3-A5GO-06 3 51246236 51246236 C T DOCK3 Missense_Mutation p.H357Y 0.54 deleterious(0.03) possibly_damaging(0.622) TCGA-D3-A5GO-06 3 51458162 51458162 G A VPRBP Silent p.I325I 0.16 TCGA-D3-A5GO-06 3 51743007 51743007 C T GRM2 Missense_Mutation p.S3L 0.45 tolerated_low_confidence(0.59) benign(0.32) TCGA-D3-A5GO-06 3 52326387 52326387 C T GLYCTK Missense_Mutation p.R273C 0.36 deleterious(0) probably_damaging(0.943) TCGA-D3-A5GO-06 3 52397078 52397078 C T DNAH1 Missense_Mutation p.S1721F 0.45 probably_damaging(0.999) TCGA-D3-A5GO-06 3 52437159 52437159 G A BAP1 Missense_Mutation p.P629S 0.42 deleterious(0.02) probably_damaging(0.967) TCGA-D3-A5GO-06 3 52825901 52825901 G A ITIH1 Missense_Mutation p.D904N 0.48 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GO-06 3 54930778 54930778 A T CACNA2D3 Missense_Mutation p.D750V 0.38 deleterious(0.03) possibly_damaging(0.762) TCGA-D3-A5GO-06 3 54958924 54958924 G A LRTM1 Missense_Mutation p.S109L 0.43 tolerated(0.57) benign(0.21) TCGA-D3-A5GO-06 3 56183135 56183135 C T ERC2 Missense_Mutation p.R392Q 0.27 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A5GO-06 3 56468457 56468457 C T ERC2 Silent p.E193E 0.44 TCGA-D3-A5GO-06 3 58186744 58186744 T C DNASE1L3 Missense_Mutation p.K176E 0.05 deleterious(0.01) possibly_damaging(0.515) TCGA-D3-A5GO-06 3 64004491 64004491 T A PSMD6 Intron 0.40 TCGA-D3-A5GO-06 3 7620325 7620325 G A GRM7 Missense_Mutation p.D578N 0.37 tolerated(0.08) benign(0.008) TCGA-D3-A5GO-06 3 78649406 78649406 C T ROBO1 Missense_Mutation p.D1600N 0.33 tolerated_low_confidence(0.27) probably_damaging(0.98) TCGA-D3-A5GO-06 3 88205426 88205426 C T C3orf38 Missense_Mutation p.L211F 0.36 deleterious(0) probably_damaging(0.926) TCGA-D3-A5GO-06 3 9166411 9166411 G A SRGAP3 Silent p.F86F 0.44 TCGA-D3-A5GO-06 3 97753802 97753802 G A GABRR3 RNA 0.33 TCGA-D3-A5GO-06 3 97851871 97851871 G A OR5H1 Silent p.T110T 0.37 TCGA-D3-A5GO-06 3 98002054 98002054 C T OR5H2 Missense_Mutation p.S108F 0.38 tolerated(1) benign(0.002) TCGA-D3-A5GO-06 3 98002320 98002320 C T OR5H2 Missense_Mutation p.P197S 0.36 tolerated(0.06) benign(0.159) TCGA-D3-A5GO-06 3 98002430 98002430 G A OR5H2 Silent p.K233K 0.34 TCGA-D3-A5GO-06 3 98188467 98188467 G A OR5K1 Missense_Mutation p.G16E 0.36 deleterious(0.01) possibly_damaging(0.874) TCGA-D3-A5GO-06 3 9877200 9877200 G A TTLL3 3'Flank 0.42 TCGA-D3-A5GO-06 4 100349303 100349303 T A ADH7 Silent p.P116P 0.24 TCGA-D3-A5GO-06 4 100349304 100349304 G C ADH7 Missense_Mutation p.P116R 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 1018754 1018754 C T FGFRL1 Silent p.P378P 0.63 TCGA-D3-A5GO-06 4 103789999 103789999 A T UBE2D3 5'UTR 0.15 TCGA-D3-A5GO-06 4 106155816 106155816 C T TET2 Silent p.S239S 0.65 TCGA-D3-A5GO-06 4 107845207 107845207 G A DKK2 Silent p.F228F 0.21 TCGA-D3-A5GO-06 4 107847042 107847042 C T DKK2 Missense_Mutation p.G96E 0.18 deleterious(0.01) possibly_damaging(0.812) TCGA-D3-A5GO-06 4 110790998 110790998 C T LRIT3 Missense_Mutation p.P365S 0.19 tolerated(0.13) benign(0.099) TCGA-D3-A5GO-06 4 111464204 111464204 G A ENPEP Missense_Mutation p.D660N 0.67 tolerated(0.4) possibly_damaging(0.654) TCGA-D3-A5GO-06 4 111482604 111482604 G A ENPEP Missense_Mutation p.E922K 0.64 tolerated(0.18) benign(0.279) TCGA-D3-A5GO-06 4 113108007 113108007 C T C4orf32 Silent p.F104F 0.61 TCGA-D3-A5GO-06 4 114275901 114275901 C T ANK2 Nonsense_Mutation p.Q2043* 0.59 TCGA-D3-A5GO-06 4 114824031 114824031 C T ARSJ Missense_Mutation p.G400D 0.66 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 114824237 114824237 C T ARSJ Silent p.Q331Q 0.15 TCGA-D3-A5GO-06 4 115577995 115577995 C T UGT8 Intron 0.88 TCGA-D3-A5GO-06 4 126319956 126319956 G A FAT4 Silent p.Q1731Q 0.59 TCGA-D3-A5GO-06 4 126373497 126373497 C T FAT4 Missense_Mutation p.P3776S 0.62 probably_damaging(0.948) TCGA-D3-A5GO-06 4 128807120 128807120 T A PLK4 Missense_Mutation p.C199S 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 13378202 13378202 G A RAB28 Silent p.I180I 0.20 TCGA-D3-A5GO-06 4 139994657 139994657 G A ELF2 Silent p.A101A 0.52 TCGA-D3-A5GO-06 4 145568084 145568084 G A HHIP Missense_Mutation p.G86E 0.20 tolerated(1) benign(0.13) TCGA-D3-A5GO-06 4 151271224 151271224 G A LRBA Nonsense_Mutation p.R2439* 0.72 TCGA-D3-A5GO-06 4 151837862 151837862 C T LRBA Nonsense_Mutation p.W225* 0.67 TCGA-D3-A5GO-06 4 153897222 153897222 C T FHDC1 Missense_Mutation p.P927S 0.12 tolerated(0.12) benign(0.001) TCGA-D3-A5GO-06 4 153897471 153897471 C T FHDC1 Missense_Mutation p.P1010S 0.54 tolerated(0.62) benign(0.015) TCGA-D3-A5GO-06 4 15444230 15444230 G A C1QTNF7 Missense_Mutation p.G233E 0.65 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 162307132 162307132 G A FSTL5 Missense_Mutation p.L771F 0.70 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GO-06 4 162463704 162463704 G A FSTL5 Missense_Mutation p.S386F 0.64 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 4 163032490 163032490 C T FSTL5 Missense_Mutation p.G20E 0.56 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-D3-A5GO-06 4 166924569 166924569 G A TLL1 Missense_Mutation p.G220E 0.71 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GO-06 4 166976293 166976293 C T TLL1 Silent p.S530S 0.58 TCGA-D3-A5GO-06 4 167656185 167656185 C T SPOCK3 Missense_Mutation p.D400N 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A5GO-06 4 169362491 169362491 G A DDX60L Nonsense_Mutation p.Q431* 0.14 TCGA-D3-A5GO-06 4 173873278 173873278 G A GALNTL6 Missense_Mutation p.D414N 0.16 deleterious(0.05) probably_damaging(0.96) TCGA-D3-A5GO-06 4 175688114 175688114 C T GLRA3 Missense_Mutation p.M89I 0.27 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 4 175688129 175688129 G A GLRA3 Silent p.I84I 0.26 TCGA-D3-A5GO-06 4 175898711 175898711 C T ADAM29 Silent p.L679L 0.18 TCGA-D3-A5GO-06 4 177114725 177114725 G A SPATA4 Missense_Mutation p.S76L 0.78 deleterious(0) possibly_damaging(0.543) TCGA-D3-A5GO-06 4 17826621 17826621 C T NCAPG Missense_Mutation p.P472S 0.68 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GO-06 4 183600989 183600989 G A TENM3 Silent p.G499G 0.17 TCGA-D3-A5GO-06 4 184614882 184614882 T C TRAPPC11 Missense_Mutation p.L793S 0.17 deleterious(0) probably_damaging(0.961) TCGA-D3-A5GO-06 4 187197491 187197491 C T F11 Silent p.P234P 0.22 TCGA-D3-A5GO-06 4 1918700 1918700 G A WHSC1 Missense_Mutation p.G288E 0.51 tolerated(0.88) benign(0.019) TCGA-D3-A5GO-06 4 20490460 20490460 C T SLIT2 Silent p.N210N 0.50 TCGA-D3-A5GO-06 4 20611712 20611712 G A SLIT2 Missense_Mutation p.D1257N 0.61 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 4 23803489 23803489 G A PPARGC1A Silent p.F719F 0.74 TCGA-D3-A5GO-06 4 39000389 39000389 G A TMEM156 Missense_Mutation p.P77S 0.70 deleterious(0.03) benign(0.003) TCGA-D3-A5GO-06 4 39088189 39088189 G A KLHL5 Missense_Mutation p.E365K 0.65 deleterious(0) possibly_damaging(0.685) TCGA-D3-A5GO-06 4 41016113 41016113 G A APBB2 Missense_Mutation p.R108C 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 4 41983993 41983993 C T DCAF4L1 Missense_Mutation p.R62W 0.22 deleterious(0.01) possibly_damaging(0.586) TCGA-D3-A5GO-06 4 42895324 42895324 G A GRXCR1 Missense_Mutation p.R14Q 0.22 tolerated_low_confidence(0.37) benign(0.311) TCGA-D3-A5GO-06 4 47939364 47939364 G A CNGA1 Silent p.L452L 0.23 TCGA-D3-A5GO-06 4 47942805 47942805 G A CNGA1 Silent p.I282I 0.23 TCGA-D3-A5GO-06 4 48037042 48037042 G A NIPAL1 Missense_Mutation p.M202I 0.62 tolerated(0.36) benign(0.006) TCGA-D3-A5GO-06 4 48906539 48906539 G A OCIAD2 Nonsense_Mutation p.Q10* 0.23 TCGA-D3-A5GO-06 4 55146569 55146569 G A PDGFRA Missense_Mutation p.R748K 0.59 tolerated(0.07) possibly_damaging(0.761) TCGA-D3-A5GO-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.65 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 57865805 57865805 G T POLR2B Missense_Mutation p.G253V 0.66 deleterious(0.03) probably_damaging(0.99) TCGA-D3-A5GO-06 4 62813844 62813844 C T LPHN3 Silent p.N817N 0.44 TCGA-D3-A5GO-06 4 6335388 6335388 C T PPP2R2C Silent p.V287V 0.51 TCGA-D3-A5GO-06 4 65145913 65145913 T C TECRL Silent p.G323G 0.15 TCGA-D3-A5GO-06 4 65155440 65155440 G A TECRL Missense_Mutation p.P274S 0.17 tolerated(0.14) benign(0.026) TCGA-D3-A5GO-06 4 65274988 65274988 C T TECRL Missense_Mutation p.D28N 0.23 tolerated_low_confidence(1) benign(0) TCGA-D3-A5GO-06 4 69512844 69512844 C T UGT2B15 Missense_Mutation p.G524E 0.19 tolerated(0.14) benign(0.272) TCGA-D3-A5GO-06 4 69798452 69798452 G A UGT2A3 Missense_Mutation p.S297L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 4 69817217 69817217 C T UGT2A3 Missense_Mutation p.E88K 0.57 tolerated(0.52) benign(0.01) TCGA-D3-A5GO-06 4 70079873 70079873 G A UGT2B11 Missense_Mutation p.P190S 0.58 deleterious(0.02) probably_damaging(0.991) TCGA-D3-A5GO-06 4 71265043 71265043 C T PROL1 Missense_Mutation p.S14L 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-D3-A5GO-06 4 71347402 71347402 C T MUC7 Missense_Mutation p.S314F 0.61 tolerated(0.48) unknown(0) TCGA-D3-A5GO-06 4 71500280 71500280 C T ENAM Missense_Mutation p.P156S 0.57 deleterious(0.03) possibly_damaging(0.536) TCGA-D3-A5GO-06 4 74280830 74280830 C T ALB Silent p.T379T 0.59 TCGA-D3-A5GO-06 4 74313347 74313347 G A AFP Missense_Mutation p.D338N 0.17 tolerated(0.29) benign(0.083) TCGA-D3-A5GO-06 4 74863790 74863790 C T CXCL5 Missense_Mutation p.E89K 0.66 tolerated(0.32) possibly_damaging(0.676) TCGA-D3-A5GO-06 4 75091054 75091054 C T MTHFD2L Missense_Mutation p.P250S 0.18 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 4 76924771 76924771 G A CXCL9 Missense_Mutation p.R120C 0.53 tolerated(0.08) unknown(0) TCGA-D3-A5GO-06 4 81207815 81207815 C T FGF5 Missense_Mutation p.R266C 0.63 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A5GO-06 4 82377913 82377913 G A RASGEF1B Silent p.I110I 0.62 TCGA-D3-A5GO-06 4 85599427 85599427 G A WDFY3 Nonsense_Mutation p.R3385* 0.43 TCGA-D3-A5GO-06 4 85937 85937 C T Z95704.2 RNA 0.21 TCGA-D3-A5GO-06 4 88239495 88239495 G A HSD17B13 Missense_Mutation p.R102C 0.22 deleterious(0.01) possibly_damaging(0.791) TCGA-D3-A5GO-06 4 88584383 88584383 G A DMP1 Missense_Mutation p.E485K 0.64 deleterious(0.01) unknown(0) TCGA-D3-A5GO-06 4 89708948 89708948 G A FAM13A Silent p.R409R 0.15 TCGA-D3-A5GO-06 4 94159601 94159601 G A GRID2 Missense_Mutation p.G402E 0.13 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GO-06 4 9784199 9784199 G A DRD5 Silent p.R182R 0.19 TCGA-D3-A5GO-06 4 99355100 99355100 C T RAP1GDS1 Missense_Mutation p.T486I 0.35 deleterious(0.05) benign(0.025) TCGA-D3-A5GO-06 5 100222075 100222075 C T ST8SIA4 Missense_Mutation p.E159K 0.40 benign(0.203) TCGA-D3-A5GO-06 5 101593742 101593742 G A SLCO4C1 Missense_Mutation p.S393L 0.33 tolerated(0.06) benign(0.248) TCGA-D3-A5GO-06 5 101795426 101795426 G A SLCO6A1 Missense_Mutation p.L319F 0.47 tolerated(0.25) benign(0.058) TCGA-D3-A5GO-06 5 101834635 101834635 G A SLCO6A1 5'UTR 0.43 TCGA-D3-A5GO-06 5 102285616 102285616 A G PAM Silent p.V245V 0.45 TCGA-D3-A5GO-06 5 110411643 110411643 G A TSLP Splice_Site p.X118_splice 0.44 TCGA-D3-A5GO-06 5 110820146 110820146 G A CAMK4 Silent p.V468V 0.41 TCGA-D3-A5GO-06 5 112926865 112926865 G A YTHDC2 Missense_Mutation p.R1318Q 0.33 tolerated(0.45) benign(0.001) TCGA-D3-A5GO-06 5 118965409 118965409 G A FAM170A 5'UTR 0.49 TCGA-D3-A5GO-06 5 121759418 121759418 G A SNCAIP Missense_Mutation p.G329E 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A5GO-06 5 123982628 123982628 G A ZNF608 Missense_Mutation p.S1150L 0.34 tolerated(0.07) possibly_damaging(0.57) TCGA-D3-A5GO-06 5 125968242 125968242 G A C5orf48 Missense_Mutation p.E31K 0.40 tolerated(0.7) benign(0.001) TCGA-D3-A5GO-06 5 126792924 126792924 C T MEGF10 Silent p.L1113L 0.44 TCGA-D3-A5GO-06 5 127730909 127730909 G A FBN2 Silent p.L379L 0.40 TCGA-D3-A5GO-06 5 128301751 128301751 C T SLC27A6 5'UTR 0.31 TCGA-D3-A5GO-06 5 128301777 128301777 G A SLC27A6 5'UTR 0.24 TCGA-D3-A5GO-06 5 128956429 128956429 G A ADAMTS19 Missense_Mutation p.E527K 0.49 deleterious(0.04) benign(0.217) TCGA-D3-A5GO-06 5 132051943 132051943 G A KIF3A Silent p.T316T 0.25 TCGA-D3-A5GO-06 5 132269998 132269998 G A AFF4 Silent p.P253P 0.26 TCGA-D3-A5GO-06 5 132535015 132535015 G A FSTL4 Silent p.S767S 0.63 TCGA-D3-A5GO-06 5 135692306 135692306 G A TRPC7 Missense_Mutation p.T257I 0.26 deleterious(0.01) possibly_damaging(0.516) TCGA-D3-A5GO-06 5 137481495 137481495 C T BRD8 Silent p.K1117K 0.20 TCGA-D3-A5GO-06 5 137500059 137500059 G A BRD8 Missense_Mutation p.P592L 0.37 tolerated(0.71) benign(0.001) TCGA-D3-A5GO-06 5 13788937 13788937 C T DNAH5 Silent p.K2845K 0.65 TCGA-D3-A5GO-06 5 138117707 138117707 C T CTNNA1 Missense_Mutation p.L32F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 5 13883114 13883114 G A DNAH5 Missense_Mutation p.P1025S 0.58 possibly_damaging(0.641) TCGA-D3-A5GO-06 5 13886118 13886118 T A DNAH5 Nonsense_Mutation p.K900* 0.57 TCGA-D3-A5GO-06 5 139838840 139838840 T C ANKHD1 Silent p.L524L 0.33 TCGA-D3-A5GO-06 5 140203522 140203522 G A PCDHA5 Missense_Mutation p.R721Q 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.833) TCGA-D3-A5GO-06 5 140203523 140203523 G A PCDHA5 Silent p.R721R 0.26 TCGA-D3-A5GO-06 5 140221648 140221648 G A PCDHA8 Missense_Mutation p.E248K 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A5GO-06 5 140229243 140229243 C T PCDHA9 Missense_Mutation p.S388F 0.34 tolerated_low_confidence(0.06) benign(0.073) TCGA-D3-A5GO-06 5 140229899 140229899 C T PCDHA9 Missense_Mutation p.L607F 0.43 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A5GO-06 5 140236829 140236829 C T PCDHA10 Missense_Mutation p.T399I 0.44 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D3-A5GO-06 5 140474669 140474669 G A PCDHB2 Missense_Mutation p.G99S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.863) TCGA-D3-A5GO-06 5 140502436 140502436 G A PCDHB4 Missense_Mutation p.E286K 0.21 tolerated_low_confidence(0.06) benign(0.287) TCGA-D3-A5GO-06 5 140515899 140515899 G A PCDHB5 Missense_Mutation p.E295K 0.32 tolerated_low_confidence(0.12) benign(0.001) TCGA-D3-A5GO-06 5 140516693 140516693 C T PCDHB5 Silent p.F559F 0.34 TCGA-D3-A5GO-06 5 140558185 140558185 G A PCDHB8 Silent p.R190R 0.08 TCGA-D3-A5GO-06 5 140572443 140572443 C T PCDHB10 Silent p.F106F 0.32 TCGA-D3-A5GO-06 5 140574328 140574328 C T PCDHB10 Missense_Mutation p.P735S 0.34 tolerated_low_confidence(0.06) benign(0.32) TCGA-D3-A5GO-06 5 140580520 140580520 C T PCDHB11 Silent p.F391F 0.34 TCGA-D3-A5GO-06 5 140604917 140604917 C T PCDHB14 Silent p.L614L 0.30 TCGA-D3-A5GO-06 5 140616288 140616288 C T PCDHB18 RNA 0.36 TCGA-D3-A5GO-06 5 140735534 140735534 C T PCDHGA4 Missense_Mutation p.P256L 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-D3-A5GO-06 5 140744029 140744029 C T PCDHGA5 Silent p.F44F 0.43 TCGA-D3-A5GO-06 5 140750188 140750188 C T PCDHGB3 Missense_Mutation p.T76I 0.40 tolerated(0.18) possibly_damaging(0.726) TCGA-D3-A5GO-06 5 140751497 140751497 G A PCDHGB3 Silent p.G512G 0.40 TCGA-D3-A5GO-06 5 141242887 141242887 G A PCDH1 Silent p.F1003F 0.32 TCGA-D3-A5GO-06 5 141974939 141974939 C T FGF1 Silent p.K128K 0.52 TCGA-D3-A5GO-06 5 145317863 145317863 G A SH3RF2 Missense_Mutation p.M124I 0.28 tolerated(0.06) benign(0.067) TCGA-D3-A5GO-06 5 145393542 145393542 C T SH3RF2 Missense_Mutation p.P326L 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 5 145439538 145439538 G A SH3RF2 Silent p.Q555Q 0.48 TCGA-D3-A5GO-06 5 145537167 145537167 G C LARS Missense_Mutation p.F288L 0.60 deleterious(0) possibly_damaging(0.456) TCGA-D3-A5GO-06 5 147040593 147040593 C T JAKMIP2 Missense_Mutation p.G182E 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 5 147928281 147928281 G A HTR4 Silent p.V101V 0.50 TCGA-D3-A5GO-06 5 148730806 148730806 C T GRPEL2 Silent p.A213A 0.28 TCGA-D3-A5GO-06 5 148808503 148808503 C T MIR143 RNA 0.32 TCGA-D3-A5GO-06 5 148996174 148996174 C T ARHGEF37 Missense_Mutation p.P168L 0.23 deleterious(0.01) possibly_damaging(0.823) TCGA-D3-A5GO-06 5 150080667 150080667 C T RBM22 5'UTR 0.44 TCGA-D3-A5GO-06 5 150563997 150563997 C T CCDC69 Silent p.E207E 0.43 TCGA-D3-A5GO-06 5 150946444 150946444 G A FAT2 Silent p.I683I 0.35 TCGA-D3-A5GO-06 5 154267748 154267748 T A GEMIN5 3'UTR 0.50 TCGA-D3-A5GO-06 5 156378773 156378773 G A TIMD4 Silent p.T143T 0.34 TCGA-D3-A5GO-06 5 156742036 156742036 C T CYFIP2 Silent p.T404T 0.53 TCGA-D3-A5GO-06 5 15936912 15936912 G A FBXL7 Missense_Mutation p.D365N 0.64 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GO-06 5 161113986 161113986 G A GABRA6 Missense_Mutation p.G68R 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 5 167589702 167589702 G A TENM2 Missense_Mutation p.G837R 0.41 deleterious(0) possibly_damaging(0.452) TCGA-D3-A5GO-06 5 167630771 167630771 G A TENM2 Missense_Mutation p.E1170K 0.23 deleterious(0) probably_damaging(0.92) TCGA-D3-A5GO-06 5 167645264 167645264 C T TENM2 Silent p.C1456C 0.35 TCGA-D3-A5GO-06 5 168123334 168123334 G A SLIT3 Silent p.I1015I 0.55 TCGA-D3-A5GO-06 5 168233482 168233482 G A SLIT3 Missense_Mutation p.P302S 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 5 168620520 168620520 C T SLIT3 Missense_Mutation p.E126K 0.42 tolerated(0.06) benign(0.013) TCGA-D3-A5GO-06 5 169494645 169494645 G A DOCK2 Silent p.G1533G 0.46 TCGA-D3-A5GO-06 5 170222292 170222292 G A GABRP Silent p.L107L 0.10 TCGA-D3-A5GO-06 5 170883792 170883792 C T FGF18 Missense_Mutation p.P203S 0.50 tolerated(0.15) benign(0.319) TCGA-D3-A5GO-06 5 171520516 171520516 G A STK10 Missense_Mutation p.S485L 0.37 deleterious(0.03) benign(0.004) TCGA-D3-A5GO-06 5 172750363 172750363 C T STC2 Missense_Mutation p.S122N 0.50 tolerated(0.05) probably_damaging(1) TCGA-D3-A5GO-06 5 17354459 17354459 G A CTD-2139B15.2 RNA 0.25 TCGA-D3-A5GO-06 5 175306953 175306953 G A CPLX2 Missense_Mutation p.G104S 0.58 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A5GO-06 5 176562160 176562160 C T NSD1 Missense_Mutation p.P19L 0.49 deleterious_low_confidence(0) benign(0.212) TCGA-D3-A5GO-06 5 176562432 176562432 C T NSD1 Missense_Mutation p.P110S 0.32 deleterious_low_confidence(0.01) benign(0.115) TCGA-D3-A5GO-06 5 178310306 178310306 C T ZNF354B Missense_Mutation p.L285F 0.44 deleterious(0.05) probably_damaging(1) TCGA-D3-A5GO-06 5 178418523 178418523 C T GRM6 Silent p.R253R 0.44 TCGA-D3-A5GO-06 5 178562941 178562941 G A ADAMTS2 Missense_Mutation p.A685V 0.45 deleterious(0.02) benign(0.058) TCGA-D3-A5GO-06 5 179305440 179305440 C T TBC1D9B Missense_Mutation p.E551K 0.45 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GO-06 5 180049771 180049771 C T FLT4 Silent p.K539K 0.30 TCGA-D3-A5GO-06 5 19721525 19721525 C T CDH18 Missense_Mutation p.G192R 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 5 23524449 23524449 G A PRDM9 Silent p.V319V 0.29 TCGA-D3-A5GO-06 5 24488226 24488226 C T CDH10 Missense_Mutation p.R638Q 0.21 tolerated(0.07) benign(0.209) TCGA-D3-A5GO-06 5 24491823 24491823 C T CDH10 Missense_Mutation p.G580S 0.11 tolerated(0.8) benign(0.082) TCGA-D3-A5GO-06 5 24509759 24509759 A C CDH10 Missense_Mutation p.F391C 0.10 deleterious(0) possibly_damaging(0.873) TCGA-D3-A5GO-06 5 31294238 31294238 G A CDH6 Missense_Mutation p.R133K 0.25 tolerated(0.2) benign(0.001) TCGA-D3-A5GO-06 5 31297434 31297434 G A CDH6 Missense_Mutation p.D188N 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.16 tolerated(0.31) possibly_damaging(0.72) TCGA-D3-A5GO-06 5 32074441 32074441 G A PDZD2 Missense_Mutation p.E1077K 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 5 33937213 33937213 A G RXFP3 Missense_Mutation p.N123S 0.24 tolerated(0.5) benign(0.192) TCGA-D3-A5GO-06 5 34830974 34830974 G A RAI14 3'Flank 0.56 TCGA-D3-A5GO-06 5 35065776 35065776 G A PRLR Silent p.S428S 0.22 TCGA-D3-A5GO-06 5 35873655 35873655 A T IL7R Missense_Mutation p.K204I 0.25 deleterious(0) probably_damaging(0.983) TCGA-D3-A5GO-06 5 35921187 35921187 C T CAPSL Silent p.A12A 0.14 TCGA-D3-A5GO-06 5 38425169 38425169 G A EGFLAM Silent p.G595G 0.23 TCGA-D3-A5GO-06 5 38427202 38427202 C T EGFLAM Silent p.F634F 0.28 TCGA-D3-A5GO-06 5 39134989 39134989 C T FYB Missense_Mutation p.G558E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 5 39153643 39153643 G A FYB Missense_Mutation p.P410L 0.25 tolerated(0.19) benign(0.022) TCGA-D3-A5GO-06 5 39202604 39202604 C T FYB Silent p.P163P 0.65 TCGA-D3-A5GO-06 5 39316104 39316104 C T C9 Missense_Mutation p.E215K 0.29 deleterious(0.04) probably_damaging(0.945) TCGA-D3-A5GO-06 5 40934527 40934527 C T C7 Missense_Mutation p.P80L 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 5 41010076 41010076 G A MROH2B Missense_Mutation p.H1081Y 0.26 tolerated(0.08) probably_damaging(0.984) TCGA-D3-A5GO-06 5 41048463 41048463 C T MROH2B Nonsense_Mutation p.W549* 0.29 TCGA-D3-A5GO-06 5 41149355 41149355 C T C6 Missense_Mutation p.E871K 0.29 deleterious(0) probably_damaging(0.983) TCGA-D3-A5GO-06 5 41161821 41161821 C T C6 Missense_Mutation p.E478K 0.29 deleterious(0.01) possibly_damaging(0.805) TCGA-D3-A5GO-06 5 42695177 42695177 C T GHR Missense_Mutation p.S142F 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A5GO-06 5 453869 453869 C T EXOC3 Missense_Mutation p.T250I 0.60 tolerated(0.11) benign(0.001) TCGA-D3-A5GO-06 5 45396699 45396699 G A HCN1 Silent p.T375T 0.34 TCGA-D3-A5GO-06 5 49698148 49698148 C T EMB Missense_Mutation p.G295R 0.15 deleterious(0.01) possibly_damaging(0.71) TCGA-D3-A5GO-06 5 49707048 49707048 G A EMB Silent p.T122T 0.47 TCGA-D3-A5GO-06 5 50117055 50117055 T A PARP8 Missense_Mutation p.D559E 0.32 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GO-06 5 61846259 61846259 C T IPO11 Silent p.P812P 0.57 TCGA-D3-A5GO-06 5 65319138 65319138 A T ERBB2IP Silent p.L206L 0.51 TCGA-D3-A5GO-06 5 66350257 66350257 T C MAST4 Silent p.L234L 0.36 TCGA-D3-A5GO-06 5 68902941 68902941 C T RP11-848G14.2 RNA 0.12 TCGA-D3-A5GO-06 5 72383974 72383974 C T FCHO2 3'UTR 0.38 TCGA-D3-A5GO-06 5 72800226 72800226 C T BTF3 Missense_Mutation p.P191L 0.54 tolerated(0.08) benign(0.109) TCGA-D3-A5GO-06 5 74677788 74677788 G A COL4A3BP Missense_Mutation p.H663Y 0.46 tolerated(0.19) possibly_damaging(0.842) TCGA-D3-A5GO-06 5 76129488 76129488 G A F2RL1 Silent p.R352R 0.44 TCGA-D3-A5GO-06 5 78610674 78610674 G A JMY Missense_Mutation p.V887M 0.33 tolerated(0.05) probably_damaging(0.918) TCGA-D3-A5GO-06 5 79616265 79616265 A T SPZ1 Missense_Mutation p.K77N 0.52 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A5GO-06 5 83360566 83360566 C T EDIL3 Missense_Mutation p.R302Q 0.29 tolerated(0.12) probably_damaging(0.979) TCGA-D3-A5GO-06 5 83402469 83402469 G A EDIL3 Nonsense_Mutation p.Q217* 0.29 TCGA-D3-A5GO-06 5 889719 889719 G A BRD9 Silent p.F148F 0.31 TCGA-D3-A5GO-06 5 90020788 90020788 G A GPR98 Silent p.G3296G 0.44 TCGA-D3-A5GO-06 5 90049464 90049464 C T GPR98 Missense_Mutation p.S3732L 0.33 possibly_damaging(0.879) TCGA-D3-A5GO-06 5 90052857 90052857 C T GPR98 Missense_Mutation p.P3940L 0.46 probably_damaging(0.995) TCGA-D3-A5GO-06 5 90052934 90052934 G A GPR98 Missense_Mutation p.D3966N 0.34 probably_damaging(0.989) TCGA-D3-A5GO-06 5 93159893 93159893 G A FAM172A Silent p.F289F 0.31 TCGA-D3-A5GO-06 6 100390904 100390904 C T MCHR2 Missense_Mutation p.V170I 0.20 tolerated(0.34) benign(0.006) TCGA-D3-A5GO-06 6 100838605 100838605 C T SIM1 Missense_Mutation p.E645K 0.15 tolerated_low_confidence(0.15) benign(0.089) TCGA-D3-A5GO-06 6 101847244 101847244 G A GRIK2 Missense_Mutation p.G31R 0.10 tolerated(0.08) benign(0.003) TCGA-D3-A5GO-06 6 101847245 101847245 G A GRIK2 Missense_Mutation p.G31E 0.09 tolerated(0.09) benign(0.034) TCGA-D3-A5GO-06 6 102307302 102307302 G A GRIK2 Silent p.G486G 0.25 TCGA-D3-A5GO-06 6 105474268 105474268 G A LIN28B Silent p.R98R 0.54 TCGA-D3-A5GO-06 6 10556735 10556735 T A GCNT2 Intron 0.54 TCGA-D3-A5GO-06 6 106553490 106553490 G A PRDM1 Silent p.R485R 0.39 TCGA-D3-A5GO-06 6 107232029 107232029 G A MIR587 RNA 0.55 TCGA-D3-A5GO-06 6 114378856 114378856 C T HS3ST5 Silent p.R202R 0.27 TCGA-D3-A5GO-06 6 117053478 117053478 C T KPNA5 Nonsense_Mutation p.Q538* 0.25 TCGA-D3-A5GO-06 6 128134908 128134908 C T THEMIS Missense_Mutation p.G293E 0.23 tolerated(0.1) benign(0.133) TCGA-D3-A5GO-06 6 128307008 128307008 C T PTPRK Missense_Mutation p.E1043K 0.30 deleterious(0.03) probably_damaging(0.956) TCGA-D3-A5GO-06 6 128330313 128330313 G A PTPRK Silent p.I765I 0.24 TCGA-D3-A5GO-06 6 129371135 129371135 G A LAMA2 Missense_Mutation p.G62E 0.23 tolerated(0.08) benign(0.434) TCGA-D3-A5GO-06 6 129419560 129419560 G A LAMA2 Silent p.E213E 0.28 TCGA-D3-A5GO-06 6 129618904 129618904 C T LAMA2 Silent p.F977F 0.57 TCGA-D3-A5GO-06 6 129759863 129759863 G A LAMA2 Missense_Mutation p.R2014K 0.20 tolerated(0.72) benign(0.001) TCGA-D3-A5GO-06 6 130762664 130762664 G A TMEM200A Missense_Mutation p.G366E 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A5GO-06 6 131216181 131216181 G A EPB41L2 Missense_Mutation p.R439C 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GO-06 6 132068158 132068158 G A ENPP3 3'UTR 0.50 TCGA-D3-A5GO-06 6 132694079 132694079 G A MOXD1 Missense_Mutation p.P157S 0.22 deleterious(0.01) benign(0.293) TCGA-D3-A5GO-06 6 132966667 132966667 A T TAAR1 Missense_Mutation p.I159N 0.51 deleterious(0) probably_damaging(0.981) TCGA-D3-A5GO-06 6 133783826 133783826 G A EYA4 Silent p.Q216Q 0.16 TCGA-D3-A5GO-06 6 136599037 136599037 G A BCLAF1 Nonsense_Mutation p.Q328* 0.22 TCGA-D3-A5GO-06 6 139576745 139576745 G A TXLNB Nonsense_Mutation p.Q345* 0.51 TCGA-D3-A5GO-06 6 146126700 146126700 G T FBXO30 Missense_Mutation p.S281Y 0.11 tolerated(0.21) benign(0.089) TCGA-D3-A5GO-06 6 152415538 152415538 C T ESR1 Missense_Mutation p.S463F 0.30 deleterious(0) probably_damaging(0.977) TCGA-D3-A5GO-06 6 152711441 152711441 G A SYNE1 Silent p.I2717I 0.33 TCGA-D3-A5GO-06 6 15374358 15374358 A T JARID2 Missense_Mutation p.D19V 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-D3-A5GO-06 6 158497676 158497676 G A SYNJ2 Missense_Mutation p.E771K 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 6 158504519 158504519 G A SYNJ2 Missense_Mutation p.R975Q 0.46 tolerated(1) benign(0.004) TCGA-D3-A5GO-06 6 158504540 158504540 G A SYNJ2 Missense_Mutation p.R982Q 0.45 deleterious(0.02) benign(0.354) TCGA-D3-A5GO-06 6 159206584 159206584 G A EZR Missense_Mutation p.P75L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GO-06 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.48 TCGA-D3-A5GO-06 6 160239611 160239611 C T PNLDC1 Silent p.S383S 0.16 TCGA-D3-A5GO-06 6 163235180 163235180 T C PACRG Missense_Mutation p.V53A 0.33 deleterious(0.04) benign(0.255) TCGA-D3-A5GO-06 6 165693524 165693524 C T C6orf118 3'UTR 0.32 TCGA-D3-A5GO-06 6 166720853 166720853 C T PRR18 Missense_Mutation p.E260K 0.56 deleterious(0) possibly_damaging(0.502) TCGA-D3-A5GO-06 6 18264783 18264783 G A DEK 5'UTR 0.31 TCGA-D3-A5GO-06 6 25917006 25917006 G A SLC17A2 Silent p.F279F 0.60 TCGA-D3-A5GO-06 6 26032060 26032060 G A HIST1H3B Nonsense_Mutation p.Q77* 0.49 TCGA-D3-A5GO-06 6 28403841 28403841 C T ZSCAN23 Missense_Mutation p.R68K 0.31 deleterious(0.04) possibly_damaging(0.762) TCGA-D3-A5GO-06 6 28500114 28500114 G A GPX5 Missense_Mutation p.G126R 0.36 tolerated(0.11) benign(0.19) TCGA-D3-A5GO-06 6 29644849 29644849 C T ZFP57 5'UTR 0.62 TCGA-D3-A5GO-06 6 30036912 30036912 T C PPP1R11 Silent p.F70F 0.23 TCGA-D3-A5GO-06 6 30557643 30557643 G A ABCF1 Missense_Mutation p.E709K 0.54 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A5GO-06 6 30557645 30557645 G A ABCF1 Silent p.E709E 0.55 TCGA-D3-A5GO-06 6 30920202 30920202 C T DPCR1 Missense_Mutation p.P1321S 0.38 deleterious(0) benign(0.016) TCGA-D3-A5GO-06 6 31110288 31110288 G A CCHCR1 3'UTR 0.48 TCGA-D3-A5GO-06 6 31117976 31117976 G A CCHCR1 Missense_Mutation p.S410F 0.28 tolerated(0.09) benign(0.317) TCGA-D3-A5GO-06 6 31540711 31540711 C T LTA Missense_Mutation p.P36S 0.58 tolerated(0.11) benign(0.021) TCGA-D3-A5GO-06 6 31692761 31692761 G A C6orf25 Silent p.A212A 0.16 TCGA-D3-A5GO-06 6 31747065 31747065 G A VARS Silent p.F1135F 0.42 TCGA-D3-A5GO-06 6 31963866 31963866 C T C4A Missense_Mutation p.P1122L 0.18 deleterious(0) probably_damaging(0.944) TCGA-D3-A5GO-06 6 32011620 32011620 G A TNXB Silent p.L241L 0.31 TCGA-D3-A5GO-06 6 32020739 32020739 T C TNXB Silent p.E2939E 0.35 TCGA-D3-A5GO-06 6 32029313 32029313 C T TNXB Silent p.R2451R 0.32 TCGA-D3-A5GO-06 6 32372983 32372983 G A BTNL2 Missense_Mutation p.P54S 0.31 deleterious(0.03) probably_damaging(0.913) TCGA-D3-A5GO-06 6 32714114 32714114 C T HLA-DQA2 Silent p.V237V 0.30 TCGA-D3-A5GO-06 6 33391261 33391261 G A SYNGAP1 Silent p.R25R 0.35 TCGA-D3-A5GO-06 6 33555423 33555423 C T GGNBP1 Intron 0.21 TCGA-D3-A5GO-06 6 350830 350830 G A DUSP22 Missense_Mutation p.G173R 0.29 tolerated_low_confidence(0.26) benign(0.005) TCGA-D3-A5GO-06 6 35856643 35856643 C T SRPK1 Missense_Mutation p.R84Q 0.52 deleterious(0.01) possibly_damaging(0.535) TCGA-D3-A5GO-06 6 36259166 36259166 C T PNPLA1 Missense_Mutation p.P92L 0.55 deleterious(0.01) benign(0.181) TCGA-D3-A5GO-06 6 38831833 38831833 G A DNAH8 Silent p.T1948T 0.61 TCGA-D3-A5GO-06 6 38874181 38874181 G A DNAH8 Missense_Mutation p.E2899K 0.27 probably_damaging(1) TCGA-D3-A5GO-06 6 39047409 39047409 G A GLP1R Missense_Mutation p.M371I 0.20 tolerated(0.12) benign(0.006) TCGA-D3-A5GO-06 6 39874869 39874869 G A MOCS1 3'UTR 0.57 TCGA-D3-A5GO-06 6 41309751 41309751 C T NCR2 Intron 0.18 TCGA-D3-A5GO-06 6 46675802 46675802 G A PLA2G7 Silent p.F322F 0.23 TCGA-D3-A5GO-06 6 46826916 46826916 G A GPR116 Silent p.I908I 0.38 TCGA-D3-A5GO-06 6 46996735 46996735 G A GPR110 Silent p.F21F 0.39 TCGA-D3-A5GO-06 6 4716006 4716006 G A CDYL 5'UTR 0.38 TCGA-D3-A5GO-06 6 49701475 49701475 C T CRISP3 Missense_Mutation p.D145N 0.26 tolerated(0.76) benign(0.03) TCGA-D3-A5GO-06 6 4995293 4995293 G A RPP40 3'UTR 0.36 TCGA-D3-A5GO-06 6 51612713 51612713 G A PKHD1 Missense_Mutation p.S3234F 0.13 tolerated(0.61) possibly_damaging(0.482) TCGA-D3-A5GO-06 6 52615490 52615490 T C GSTA2 Missense_Mutation p.K185R 0.38 tolerated(0.08) possibly_damaging(0.59) TCGA-D3-A5GO-06 6 52656675 52656675 C T GSTA1 Missense_Mutation p.R217K 0.23 tolerated(1) benign(0.002) TCGA-D3-A5GO-06 6 53986346 53986346 C T MLIP Silent p.F55F 0.41 TCGA-D3-A5GO-06 6 549181 549181 G A EXOC2 Silent p.I744I 0.23 TCGA-D3-A5GO-06 6 55113483 55113483 C T HCRTR2 Silent p.N90N 0.59 TCGA-D3-A5GO-06 6 55119933 55119933 G A HCRTR2 Splice_Site p.X135_splice 0.67 TCGA-D3-A5GO-06 6 55378918 55378918 G A HMGCLL1 Missense_Mutation p.S187F 0.26 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GO-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.56 tolerated(0.45) benign(0.018) TCGA-D3-A5GO-06 6 55925714 55925714 C T COL21A1 Missense_Mutation p.G776E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 6 55925786 55925786 C T COL21A1 Missense_Mutation p.G752E 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 6 62611165 62611165 G A KHDRBS2 Missense_Mutation p.P199S 0.10 tolerated(0.17) benign(0.007) TCGA-D3-A5GO-06 6 63990398 63990398 G A LGSN Missense_Mutation p.A353V 0.34 deleterious(0.01) possibly_damaging(0.77) TCGA-D3-A5GO-06 6 70639521 70639521 G A COL19A1 Missense_Mutation p.E199K 0.51 deleterious(0.02) unknown(0) TCGA-D3-A5GO-06 6 70897925 70897925 C T COL19A1 Silent p.G1001G 0.21 TCGA-D3-A5GO-06 6 73905064 73905064 G A KCNQ5 Missense_Mutation p.R928Q 0.34 tolerated_low_confidence(0.36) benign(0.011) TCGA-D3-A5GO-06 6 73951871 73951871 G A KHDC1 Missense_Mutation p.R141C 0.62 deleterious(0.01) benign(0.14) TCGA-D3-A5GO-06 6 74073511 74073511 C T KHDC3L Silent p.S194S 0.14 TCGA-D3-A5GO-06 6 74491024 74491024 G A CD109 Missense_Mutation p.D649N 0.35 tolerated(0.08) benign(0.04) TCGA-D3-A5GO-06 6 7558354 7558354 G A DSP Silent p.L93L 0.26 TCGA-D3-A5GO-06 6 7861759 7861759 G A BMP6 Silent p.T311T 0.28 TCGA-D3-A5GO-06 6 83728787 83728787 G A UBE3D Silent p.F305F 0.53 TCGA-D3-A5GO-06 6 84292048 84292048 G A SNAP91 Missense_Mutation p.S681F 0.18 deleterious(0) probably_damaging(0.992) TCGA-D3-A5GO-06 6 84302256 84302256 C T SNAP91 Silent p.V616V 0.36 TCGA-D3-A5GO-06 6 84311136 84311136 G A SNAP91 Missense_Mutation p.S393F 0.34 deleterious(0.03) unknown(0) TCGA-D3-A5GO-06 6 86257040 86257040 G A SNX14 Missense_Mutation p.P330S 0.53 tolerated(0.44) benign(0.002) TCGA-D3-A5GO-06 6 87726202 87726202 G T HTR1E 3'UTR 0.41 TCGA-D3-A5GO-06 6 88854232 88854232 G A CNR1 Silent p.G254G 0.57 TCGA-D3-A5GO-06 6 90402324 90402324 G A MDN1 Silent p.I3475I 0.23 TCGA-D3-A5GO-06 6 90452922 90452922 G A MDN1 Silent p.F1465F 0.56 TCGA-D3-A5GO-06 6 90573152 90573152 C T CASP8AP2 RNA 0.73 TCGA-D3-A5GO-06 6 90604405 90604405 C T GJA10 Missense_Mutation p.S73F 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 6 93956611 93956611 C T EPHA7 Silent p.K875K 0.38 TCGA-D3-A5GO-06 6 93965644 93965644 G A EPHA7 Missense_Mutation p.R762C 0.48 deleterious(0) probably_damaging(0.936) TCGA-D3-A5GO-06 6 94066667 94066667 G A EPHA7 Silent p.T364T 0.19 TCGA-D3-A5GO-06 6 96651213 96651213 T G FUT9 Missense_Mutation p.F61C 0.53 tolerated(0.14) benign(0.131) TCGA-D3-A5GO-06 6 96651991 96651991 G A FUT9 Silent p.K320K 0.31 TCGA-D3-A5GO-06 7 100086437 100086437 G A NYAP1 Missense_Mutation p.E365K 0.31 tolerated(0.12) probably_damaging(0.991) TCGA-D3-A5GO-06 7 100086477 100086477 G A NYAP1 Missense_Mutation p.R378Q 0.30 tolerated(0.19) probably_damaging(0.975) TCGA-D3-A5GO-06 7 100184191 100184191 C T FBXO24 5'Flank 0.42 TCGA-D3-A5GO-06 7 100349367 100349367 C T ZAN Missense_Mutation p.P547S 0.45 possibly_damaging(0.846) TCGA-D3-A5GO-06 7 100549815 100549815 G A MUC3A Silent p.T132T 0.17 TCGA-D3-A5GO-06 7 100675720 100675720 C T MUC17 Silent p.A341A 0.40 TCGA-D3-A5GO-06 7 100685187 100685187 C T MUC17 Missense_Mutation p.S3497L 0.39 possibly_damaging(0.587) TCGA-D3-A5GO-06 7 105893480 105893480 G A NAMPT Missense_Mutation p.L450F 0.39 tolerated(0.71) benign(0.394) TCGA-D3-A5GO-06 7 107580511 107580511 G A LAMB1 Silent p.S1228S 0.43 TCGA-D3-A5GO-06 7 113518733 113518733 G A PPP1R3A Missense_Mutation p.S805L 0.40 deleterious(0) probably_damaging(0.931) TCGA-D3-A5GO-06 7 117176665 117176665 C T CFTR Silent p.I269I 0.47 TCGA-D3-A5GO-06 7 117232697 117232697 G A CFTR Missense_Mutation p.E826K 0.51 deleterious(0.01) possibly_damaging(0.701) TCGA-D3-A5GO-06 7 120770249 120770249 G A CPED1 Missense_Mutation p.G493E 0.32 tolerated(0.61) benign(0.231) TCGA-D3-A5GO-06 7 122078506 122078506 C T CADPS2 Missense_Mutation p.D789N 0.50 deleterious(0) possibly_damaging(0.881) TCGA-D3-A5GO-06 7 122338703 122338703 G A RNF133 Silent p.T90T 0.37 TCGA-D3-A5GO-06 7 122342649 122342649 G A RNF148 Silent p.I52I 0.40 TCGA-D3-A5GO-06 7 122759153 122759153 G A SLC13A1 Silent p.L498L 0.39 TCGA-D3-A5GO-06 7 123593705 123593705 C T SPAM1 Silent p.F27F 0.22 TCGA-D3-A5GO-06 7 123593772 123593772 C T SPAM1 Missense_Mutation p.L50F 0.44 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GO-06 7 126173355 126173355 G T GRM8 Missense_Mutation p.S694Y 0.59 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 7 126173630 126173630 G A GRM8 Silent p.I602I 0.25 TCGA-D3-A5GO-06 7 127253091 127253091 C T PAX4 Missense_Mutation p.E226K 0.23 deleterious(0.02) possibly_damaging(0.779) TCGA-D3-A5GO-06 7 127569268 127569268 C T SND1 Missense_Mutation p.P519S 0.43 tolerated(0.09) benign(0.311) TCGA-D3-A5GO-06 7 128445926 128445926 C T CCDC136 Missense_Mutation p.R354W 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GO-06 7 129349023 129349023 C T NRF1 Missense_Mutation p.P239S 0.37 tolerated(0.06) benign(0.035) TCGA-D3-A5GO-06 7 129349024 129349024 C T NRF1 Missense_Mutation p.P239L 0.37 deleterious(0) possibly_damaging(0.529) TCGA-D3-A5GO-06 7 129989871 129989871 C T CPA5 Missense_Mutation p.P85L 0.43 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GO-06 7 135047787 135047787 G A CNOT4 Silent p.I664I 0.42 TCGA-D3-A5GO-06 7 135098321 135098321 C T CNOT4 Silent p.K201K 0.31 TCGA-D3-A5GO-06 7 136699707 136699707 C T CHRM2 Missense_Mutation p.S32F 0.31 tolerated(0.07) probably_damaging(0.942) TCGA-D3-A5GO-06 7 138453569 138453572 TCTC CTT ATP6V0A4 Frame_Shift_Del p.E82Kfs*5 0.33 TCGA-D3-A5GO-06 7 139316456 139316456 G A HIPK2 Silent p.I373I 0.59 TCGA-D3-A5GO-06 7 141296383 141296383 C T AGK Missense_Mutation p.P55S 0.47 tolerated(0.14) benign(0.011) TCGA-D3-A5GO-06 7 141385295 141385295 G A KIAA1147 Silent p.F170F 0.35 TCGA-D3-A5GO-06 7 141618715 141618715 C T OR9A4 Missense_Mutation p.L14F 0.38 deleterious(0.01) possibly_damaging(0.714) TCGA-D3-A5GO-06 7 141672710 141672710 G A TAS2R38 Silent p.S260S 0.41 TCGA-D3-A5GO-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.36 TCGA-D3-A5GO-06 7 141722209 141722209 C T MGAM Silent p.P284P 0.16 TCGA-D3-A5GO-06 7 141731546 141731546 G A MGAM Missense_Mutation p.E513K 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GO-06 7 142045592 142045592 G A TRBV4-2 Silent p.L40L 0.22 TCGA-D3-A5GO-06 7 142139373 142139373 G A TRBV7-6 Silent p.F84F 0.41 TCGA-D3-A5GO-06 7 142176575 142176575 C T TRBV7-4 Missense_Mutation p.R34K 0.36 tolerated(1) benign(0.003) TCGA-D3-A5GO-06 7 142459791 142459791 G A PRSS1 Missense_Mutation p.V123M 0.37 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GO-06 7 142574588 142574588 C T TRPV6 Missense_Mutation p.E164K 0.27 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GO-06 7 142622633 142622633 T A TRPV5 Missense_Mutation p.K371N 0.43 deleterious(0) probably_damaging(0.912) TCGA-D3-A5GO-06 7 142643326 142643326 G A KEL Missense_Mutation p.R428C 0.26 deleterious(0) probably_damaging(0.93) TCGA-D3-A5GO-06 7 142651457 142651457 G A KEL Silent p.I246I 0.40 TCGA-D3-A5GO-06 7 142655480 142655480 C T KEL Missense_Mutation p.E146K 0.32 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A5GO-06 7 142658496 142658496 G A KEL Silent p.L58L 0.42 TCGA-D3-A5GO-06 7 142880667 142880667 T C TAS2R39 Silent p.N52N 0.48 TCGA-D3-A5GO-06 7 143140806 143140806 C T TAS2R60 Silent p.F87F 0.23 TCGA-D3-A5GO-06 7 143140827 143140827 G A TAS2R60 Silent p.Q94Q 0.37 TCGA-D3-A5GO-06 7 143417275 143417275 C T FAM115C Missense_Mutation p.P375S 0.28 tolerated(0.11) benign(0.033) TCGA-D3-A5GO-06 7 143556184 143556184 G A FAM115A Silent p.L746L 0.30 TCGA-D3-A5GO-06 7 143771320 143771320 G A OR2A25 Missense_Mutation p.G3E 0.41 tolerated(0.53) benign(0.002) TCGA-D3-A5GO-06 7 143771847 143771847 G A OR2A25 Missense_Mutation p.E179K 0.35 deleterious(0) benign(0.436) TCGA-D3-A5GO-06 7 143772039 143772039 C T OR2A25 Missense_Mutation p.H243Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 7 143929733 143929733 G A OR2A42 Silent p.V68V 0.90 TCGA-D3-A5GO-06 7 144060817 144060817 C T ARHGEF5 Missense_Mutation p.S352L 0.16 deleterious(0.04) benign(0.015) TCGA-D3-A5GO-06 7 144063463 144063463 C T ARHGEF5 Missense_Mutation p.A1057V 0.18 deleterious(0.03) benign(0.025) TCGA-D3-A5GO-06 7 146536850 146536850 C T CNTNAP2 Nonsense_Mutation p.Q86* 0.33 TCGA-D3-A5GO-06 7 148768833 148768833 G A ZNF786 Missense_Mutation p.S344L 0.39 tolerated(0.66) benign(0) TCGA-D3-A5GO-06 7 148801719 148801719 G A ZNF425 Missense_Mutation p.S415L 0.19 tolerated(0.15) benign(0.227) TCGA-D3-A5GO-06 7 150171641 150171641 G A GIMAP8 Silent p.E408E 0.40 TCGA-D3-A5GO-06 7 150174466 150174466 C T GIMAP8 Silent p.F532F 0.39 TCGA-D3-A5GO-06 7 150325184 150325184 G A GIMAP6 Silent p.L168L 0.37 TCGA-D3-A5GO-06 7 150417903 150417903 C T GIMAP1 Missense_Mutation p.P271S 0.32 tolerated(0.4) benign(0.057) TCGA-D3-A5GO-06 7 150439925 150439925 C T GIMAP5 Missense_Mutation p.T233I 0.35 tolerated(0.07) benign(0.007) TCGA-D3-A5GO-06 7 150490253 150490253 C T TMEM176B Missense_Mutation p.G175R 0.33 tolerated(0.27) benign(0.006) TCGA-D3-A5GO-06 7 150554586 150554586 G A AOC1 Missense_Mutation p.G343E 0.45 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A5GO-06 7 150819982 150819982 C T AGAP3 Intron 0.33 TCGA-D3-A5GO-06 7 150878479 150878479 G A ASB10 Silent p.T217T 0.36 TCGA-D3-A5GO-06 7 151082370 151082370 C T WDR86 Intron 0.44 TCGA-D3-A5GO-06 7 151791535 151791535 A C GALNT11 Missense_Mutation p.K75Q 0.41 tolerated(0.16) benign(0.043) TCGA-D3-A5GO-06 7 152497641 152497641 G T ACTR3B Missense_Mutation p.K42N 0.16 tolerated(0.19) benign(0.035) TCGA-D3-A5GO-06 7 1535135 1535135 G A INTS1 Missense_Mutation p.A589V 0.30 tolerated(0.08) possibly_damaging(0.517) TCGA-D3-A5GO-06 7 157926383 157926383 G A PTPRN2 Silent p.I514I 0.37 TCGA-D3-A5GO-06 7 18633644 18633644 G A HDAC9 Missense_Mutation p.R219Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 7 20762706 20762706 C T ABCB5 Missense_Mutation p.S830F 0.39 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GO-06 7 21826263 21826263 G A DNAH11 Missense_Mutation p.A3214T 0.33 benign(0.011) TCGA-D3-A5GO-06 7 23164805 23164805 G A KLHL7 Intron 0.33 TCGA-D3-A5GO-06 7 23793972 23793972 C T STK31 Missense_Mutation p.S391L 0.30 tolerated(0.23) benign(0.058) TCGA-D3-A5GO-06 7 29980343 29980343 G A SCRN1 Missense_Mutation p.H252Y 0.33 tolerated(0.1) possibly_damaging(0.745) TCGA-D3-A5GO-06 7 30795280 30795280 C T INMT Missense_Mutation p.P202L 0.40 deleterious(0.02) benign(0) TCGA-D3-A5GO-06 7 31592661 31592661 G A CCDC129 Missense_Mutation p.G34E 0.33 tolerated(0.08) benign(0.261) TCGA-D3-A5GO-06 7 34101636 34101636 G A BMPER Missense_Mutation p.G352E 0.24 tolerated(0.15) benign(0.097) TCGA-D3-A5GO-06 7 34889385 34889385 G A NPSR1 Intron 0.47 TCGA-D3-A5GO-06 7 37954009 37954009 C T SFRP4 Silent p.R164R 0.41 TCGA-D3-A5GO-06 7 38457541 38457541 C T AMPH Missense_Mutation p.E428K 0.19 tolerated(0.06) benign(0.293) TCGA-D3-A5GO-06 7 3861160 3861160 G A SDK1 Silent p.V264V 0.34 TCGA-D3-A5GO-06 7 39243911 39243911 C T POU6F2 Missense_Mutation p.P90S 0.44 tolerated_low_confidence(0.14) benign(0.133) TCGA-D3-A5GO-06 7 41729229 41729229 C T INHBA 3'UTR 0.21 TCGA-D3-A5GO-06 7 43351512 43351512 G A HECW1 Missense_Mutation p.G60S 0.36 tolerated_low_confidence(0.66) benign(0.017) TCGA-D3-A5GO-06 7 43360272 43360272 C T HECW1 Missense_Mutation p.R131C 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 7 43484873 43484873 C T HECW1 Missense_Mutation p.S701L 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A5GO-06 7 43484894 43484894 A C HECW1 Missense_Mutation p.Y708S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-D3-A5GO-06 7 44576027 44576027 C T NPC1L1 Missense_Mutation p.G561E 0.18 deleterious(0.01) benign(0.298) TCGA-D3-A5GO-06 7 45010581 45010581 C T MYO1G Silent p.V308V 0.38 TCGA-D3-A5GO-06 7 47925508 47925508 G A PKD1L1 Missense_Mutation p.P994L 0.20 tolerated(0.07) benign(0.032) TCGA-D3-A5GO-06 7 49977035 49977035 G A ZPBP 3'Flank 0.23 TCGA-D3-A5GO-06 7 51096460 51096460 T G COBL Missense_Mutation p.K778T 0.06 deleterious(0.02) benign(0.232) TCGA-D3-A5GO-06 7 53103671 53103671 C T POM121L12 Missense_Mutation p.P103S 0.40 deleterious(0.04) probably_damaging(0.932) TCGA-D3-A5GO-06 7 53103836 53103836 G A POM121L12 Missense_Mutation p.A158T 0.54 tolerated(0.47) benign(0.035) TCGA-D3-A5GO-06 7 5410512 5410512 G A TNRC18 Missense_Mutation p.P1238L 0.34 benign(0.008) TCGA-D3-A5GO-06 7 55863771 55863771 G A SEPT14 Silent p.F378F 0.24 TCGA-D3-A5GO-06 7 55874916 55874916 G T SEPT14 Silent p.R285R 0.32 TCGA-D3-A5GO-06 7 6037023 6037023 G A PMS2 Missense_Mutation p.P246L 0.15 tolerated(0.06) probably_damaging(0.95) TCGA-D3-A5GO-06 7 6077153 6077153 G A EIF2AK1 Missense_Mutation p.P412S 0.36 tolerated(0.07) possibly_damaging(0.718) TCGA-D3-A5GO-06 7 63538523 63538523 A G ZNF727 Missense_Mutation p.R366G 0.27 deleterious(0) probably_damaging(0.916) TCGA-D3-A5GO-06 7 63538735 63538735 C T ZNF727 Silent p.F436F 0.31 TCGA-D3-A5GO-06 7 6370260 6370260 G A FAM220A Missense_Mutation p.P176S 0.45 tolerated(0.11) benign(0.387) TCGA-D3-A5GO-06 7 66520842 66520842 C T TYW1 Missense_Mutation p.H375Y 0.31 deleterious(0) benign(0.172) TCGA-D3-A5GO-06 7 6731140 6731140 G A ZNF12 Missense_Mutation p.S478L 0.43 tolerated(0.08) probably_damaging(0.997) TCGA-D3-A5GO-06 7 74159269 74159269 C T GTF2I Silent p.F641F 0.31 TCGA-D3-A5GO-06 7 76619606 76619606 C T UPK3B Intron 0.19 TCGA-D3-A5GO-06 7 77569682 77569682 C T PHTF2 Intron 0.35 TCGA-D3-A5GO-06 7 794309 794309 G A HEATR2 Missense_Mutation p.D370N 0.36 deleterious(0.02) possibly_damaging(0.811) TCGA-D3-A5GO-06 7 8126191 8126191 C T GLCCI1 3'UTR 0.42 TCGA-D3-A5GO-06 7 82546104 82546104 G A PCLO Missense_Mutation p.S3733F 0.44 unknown(0) TCGA-D3-A5GO-06 7 87035667 87035667 C T ABCB4 Silent p.Q1148Q 0.31 TCGA-D3-A5GO-06 7 88423533 88423533 C T C7orf62 Missense_Mutation p.D242N 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GO-06 7 89929369 89929369 C A C7orf63 Silent p.I682I 0.19 TCGA-D3-A5GO-06 7 92730578 92730578 C T SAMD9 3'UTR 0.46 TCGA-D3-A5GO-06 7 92760570 92760570 G A SAMD9L Missense_Mutation p.S1572F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 7 93108737 93108737 C T CALCR Missense_Mutation p.R63Q 0.36 tolerated(0.09) possibly_damaging(0.805) TCGA-D3-A5GO-06 7 94931553 94931553 G A PON1 Silent p.I291I 0.36 TCGA-D3-A5GO-06 7 98515105 98515105 C T TRRAP Silent p.L809L 0.41 TCGA-D3-A5GO-06 7 99454460 99454460 G A CYP3A43 Missense_Mutation p.R268Q 0.34 tolerated(0.07) benign(0.12) TCGA-D3-A5GO-06 7 99956508 99956508 C T PILRB Missense_Mutation p.P87L 0.09 tolerated(0.45) benign(0.265) TCGA-D3-A5GO-06 7 99971862 99971862 C T PILRA Missense_Mutation p.P87L 0.34 tolerated(0.66) benign(0.002) TCGA-D3-A5GO-06 8 101153160 101153160 G A FBXO43 Missense_Mutation p.P441L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 101608869 101608869 G A SNX31 Missense_Mutation p.L326F 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A5GO-06 8 103269903 103269903 C T UBR5 Nonsense_Mutation p.W2715* 0.53 TCGA-D3-A5GO-06 8 104225165 104225165 T G BAALC Missense_Mutation p.L60R 0.32 tolerated(0.62) benign(0.395) TCGA-D3-A5GO-06 8 10465469 10465469 C T RP1L1 Missense_Mutation p.D2047N 0.37 unknown(0) TCGA-D3-A5GO-06 8 105260930 105260930 C T RIMS2 Silent p.L1160L 0.40 TCGA-D3-A5GO-06 8 105263946 105263946 C T RIMS2 Silent p.F1316F 0.33 TCGA-D3-A5GO-06 8 106813841 106813841 C T ZFPM2 Missense_Mutation p.P511S 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 8 108264126 108264126 G A ANGPT1 Missense_Mutation p.S485F 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.38 tolerated(0.07) probably_damaging(0.935) TCGA-D3-A5GO-06 8 109796697 109796697 C T TMEM74 Missense_Mutation p.A211T 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 8 109796761 109796761 G A TMEM74 Silent p.I189I 0.31 TCGA-D3-A5GO-06 8 110099808 110099808 G A TRHR Missense_Mutation p.E23K 0.44 deleterious(0.01) possibly_damaging(0.493) TCGA-D3-A5GO-06 8 110460509 110460509 C T PKHD1L1 Missense_Mutation p.H1972Y 0.52 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A5GO-06 8 110516651 110516651 C T PKHD1L1 Missense_Mutation p.H3642Y 0.60 tolerated(0.34) benign(0.001) TCGA-D3-A5GO-06 8 110523106 110523106 C T PKHD1L1 Silent p.F3832F 0.44 TCGA-D3-A5GO-06 8 11058468 11058468 G A XKR6 Silent p.L127L 0.18 TCGA-D3-A5GO-06 8 110984721 110984721 A G KCNV1 Missense_Mutation p.F253L 0.25 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GO-06 8 11188832 11188832 C T SLC35G5 Missense_Mutation p.L73F 0.36 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A5GO-06 8 113395796 113395796 C T CSMD3 Missense_Mutation p.G2011R 0.43 deleterious(0.01) possibly_damaging(0.737) TCGA-D3-A5GO-06 8 113988066 113988066 C T CSMD3 Missense_Mutation p.V448M 0.34 deleterious(0.02) possibly_damaging(0.646) TCGA-D3-A5GO-06 8 119938927 119938927 C T TNFRSF11B Missense_Mutation p.R208K 0.33 tolerated(0.07) benign(0.288) TCGA-D3-A5GO-06 8 124664268 124664268 C T KLHL38 Missense_Mutation p.R300K 0.22 deleterious(0.03) benign(0.052) TCGA-D3-A5GO-06 8 124664269 124664269 T C KLHL38 Missense_Mutation p.R300G 0.23 deleterious(0) benign(0.091) TCGA-D3-A5GO-06 8 124992888 124992888 C T FER1L6 Missense_Mutation p.S416F 0.40 deleterious(0) probably_damaging(0.942) TCGA-D3-A5GO-06 8 125088481 125088481 C T FER1L6 Missense_Mutation p.P1379S 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 125131170 125131170 C T FER1L6 Missense_Mutation p.P1792L 0.39 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GO-06 8 125335573 125335573 G A TMEM65 Missense_Mutation p.S154L 0.17 deleterious(0) probably_damaging(0.953) TCGA-D3-A5GO-06 8 126448372 126448372 T C TRIB1 Missense_Mutation p.Y260H 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 12957987 12957987 G A DLC1 Missense_Mutation p.S620F 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A5GO-06 8 13072164 13072164 G A DLC1 Intron 0.19 TCGA-D3-A5GO-06 8 130761728 130761728 C T GSDMC Silent p.E419E 0.40 TCGA-D3-A5GO-06 8 133923722 133923722 G A TG Nonsense_Mutation p.W1368* 0.35 TCGA-D3-A5GO-06 8 134072500 134072500 G A SLA Missense_Mutation p.P9L 0.59 deleterious_low_confidence(0.01) benign(0.056) TCGA-D3-A5GO-06 8 134274298 134274298 G A NDRG1 Silent p.F106F 0.36 TCGA-D3-A5GO-06 8 142166030 142166030 C T DENND3 Missense_Mutation p.P306L 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 142221623 142221623 G A SLC45A4 Missense_Mutation p.P772L 0.32 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-D3-A5GO-06 8 142226067 142226067 G A SLC45A4 Silent p.L527L 0.15 TCGA-D3-A5GO-06 8 142228572 142228572 G A SLC45A4 Silent p.S338S 0.30 TCGA-D3-A5GO-06 8 143413154 143413154 G A TSNARE1 Nonsense_Mutation p.Q262* 0.29 TCGA-D3-A5GO-06 8 144464755 144464755 C T RHPN1 Silent p.C649C 0.37 TCGA-D3-A5GO-06 8 144464756 144464756 C T RHPN1 Missense_Mutation p.P650S 0.38 tolerated(0.41) benign(0.001) TCGA-D3-A5GO-06 8 144919303 144919303 G A NRBP2 Silent p.L391L 0.42 TCGA-D3-A5GO-06 8 144941602 144941602 G A EPPK1 Silent p.L1940L 0.45 TCGA-D3-A5GO-06 8 144991293 144991293 G A PLEC Silent p.F4369F 0.38 TCGA-D3-A5GO-06 8 145218744 145218744 C T MROH1 Silent p.S5S 0.31 TCGA-D3-A5GO-06 8 145223308 145223308 C T MROH1 Missense_Mutation p.R45C 0.43 tolerated(0.1) benign(0.004) TCGA-D3-A5GO-06 8 146155966 146155966 G A ZNF16 3'UTR 0.29 TCGA-D3-A5GO-06 8 17102580 17102580 G A CNOT7 Missense_Mutation p.R28C 0.26 deleterious(0) benign(0.302) TCGA-D3-A5GO-06 8 17218703 17218703 C T MTMR7 Missense_Mutation p.D131N 0.41 tolerated(0.13) benign(0) TCGA-D3-A5GO-06 8 19221777 19221777 C T SH2D4A Missense_Mutation p.P301S 0.37 tolerated(0.17) benign(0.006) TCGA-D3-A5GO-06 8 1950698 1950698 C T KBTBD11 Missense_Mutation p.A447V 0.30 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GO-06 8 2000354 2000354 C T MYOM2 Silent p.S62S 0.23 TCGA-D3-A5GO-06 8 20069207 20069207 C T ATP6V1B2 Silent p.S216S 0.50 TCGA-D3-A5GO-06 8 22777793 22777793 C T PEBP4 Silent p.G54G 0.46 TCGA-D3-A5GO-06 8 23106856 23106856 C T CHMP7 Missense_Mutation p.P145S 0.35 tolerated(0.1) possibly_damaging(0.527) TCGA-D3-A5GO-06 8 24167676 24167676 G A ADAM28 Silent p.K76K 0.32 TCGA-D3-A5GO-06 8 24324458 24324458 C T ADAM7 Missense_Mutation p.T179I 0.39 tolerated(0.47) benign(0.007) TCGA-D3-A5GO-06 8 26501043 26501043 C T DPYSL2 Silent p.A300A 0.31 TCGA-D3-A5GO-06 8 26628180 26628180 G A ADRA1A Missense_Mutation p.S296F 0.32 deleterious(0) probably_damaging(0.913) TCGA-D3-A5GO-06 8 27145286 27145286 G A TRIM35 Silent p.V421V 0.45 TCGA-D3-A5GO-06 8 27319063 27319063 G A CHRNA2 3'UTR 0.41 TCGA-D3-A5GO-06 8 27528639 27528639 G A SCARA3 Missense_Mutation p.G531E 0.29 tolerated(0.31) probably_damaging(0.982) TCGA-D3-A5GO-06 8 27845079 27845079 G A SCARA5 Silent p.S18S 0.34 TCGA-D3-A5GO-06 8 27845080 27845080 G A SCARA5 Missense_Mutation p.S18F 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 8 2806844 2806844 C T CSMD1 Missense_Mutation p.G3460E 0.27 probably_damaging(1) TCGA-D3-A5GO-06 8 28974478 28974478 T C KIF13B Missense_Mutation p.Q1236R 0.42 tolerated(0.11) possibly_damaging(0.811) TCGA-D3-A5GO-06 8 2944702 2944702 C T CSMD1 Missense_Mutation p.R2464Q 0.35 possibly_damaging(0.574) TCGA-D3-A5GO-06 8 30703301 30703301 G A TEX15 Missense_Mutation p.P1078L 0.35 tolerated(1) benign(0) TCGA-D3-A5GO-06 8 30854010 30854010 G A PURG 3'UTR 0.27 TCGA-D3-A5GO-06 8 3200941 3200941 G A CSMD1 Missense_Mutation p.P1169L 0.36 benign(0.001) TCGA-D3-A5GO-06 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.36 probably_damaging(0.999) TCGA-D3-A5GO-06 8 32621461 32621461 G A NRG1 Silent p.E493E 0.22 TCGA-D3-A5GO-06 8 35402022 35402022 C T UNC5D Intron 0.38 TCGA-D3-A5GO-06 8 35579897 35579897 C T UNC5D Silent p.F429F 0.37 TCGA-D3-A5GO-06 8 37732413 37732413 G A RAB11FIP1 Silent p.P414P 0.39 TCGA-D3-A5GO-06 8 37732414 37732414 G A RAB11FIP1 Missense_Mutation p.P414L 0.40 tolerated(0.11) benign(0.04) TCGA-D3-A5GO-06 8 37794819 37794819 G A GOT1L1 Silent p.P165P 0.39 TCGA-D3-A5GO-06 8 37996622 37996622 G T ASH2L 3'UTR 0.50 TCGA-D3-A5GO-06 8 3855603 3855603 C T CSMD1 Missense_Mutation p.G214R 0.30 probably_damaging(1) TCGA-D3-A5GO-06 8 39581304 39581304 G A ADAM18 Nonsense_Mutation p.W685* 0.36 TCGA-D3-A5GO-06 8 39613338 39613338 C T ADAM2 Missense_Mutation p.G569E 0.24 tolerated(0.17) possibly_damaging(0.596) TCGA-D3-A5GO-06 8 39781028 39781028 G A IDO1 Missense_Mutation p.R193Q 0.11 tolerated(0.8) benign(0.001) TCGA-D3-A5GO-06 8 40011367 40011367 C T C8orf4 Missense_Mutation p.H106Y 0.36 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-D3-A5GO-06 8 41122808 41122808 C T SFRP1 Missense_Mutation p.V275M 0.35 tolerated(0.13) probably_damaging(0.979) TCGA-D3-A5GO-06 8 52287214 52287214 C T PXDNL Missense_Mutation p.G1212E 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 8 52733173 52733173 C T PCMTD1 Missense_Mutation p.R271K 0.07 tolerated(0.63) benign(0.002) TCGA-D3-A5GO-06 8 53084897 53084897 C T ST18 Missense_Mutation p.G175E 0.38 tolerated(0.09) benign(0.15) TCGA-D3-A5GO-06 8 53084992 53084992 C T ST18 Silent p.Q143Q 0.38 TCGA-D3-A5GO-06 8 54147591 54147591 G A OPRK1 Missense_Mutation p.P113L 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 55537893 55537893 C T RP1 Missense_Mutation p.S484L 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 8 55540643 55540643 C T RP1 Missense_Mutation p.L1401F 0.46 tolerated(0.42) benign(0.004) TCGA-D3-A5GO-06 8 56436024 56436024 C T XKR4 Silent p.F397F 0.39 TCGA-D3-A5GO-06 8 57353786 57353786 G A PENK 3'UTR 0.16 TCGA-D3-A5GO-06 8 57354137 57354137 G A PENK Silent p.N166N 0.28 TCGA-D3-A5GO-06 8 61764711 61764713 CCT TC CHD7 Frame_Shift_Del p.L1934Qfs*2 0.29 TCGA-D3-A5GO-06 8 61765652 61765652 C T CHD7 Missense_Mutation p.S2123F 0.48 possibly_damaging(0.85) TCGA-D3-A5GO-06 8 62371063 62371063 G A CLVS1 Silent p.S313S 0.44 TCGA-D3-A5GO-06 8 62593567 62593567 A C ASPH Silent p.G94G 0.37 TCGA-D3-A5GO-06 8 65528648 65528648 C T CYP7B1 Silent p.L150L 0.29 TCGA-D3-A5GO-06 8 67047234 67047234 G A TRIM55 Silent p.K117K 0.36 TCGA-D3-A5GO-06 8 68419059 68419059 C T CPA6 Nonsense_Mutation p.W200* 0.44 TCGA-D3-A5GO-06 8 6874222 6874222 C T DEFA3 Missense_Mutation p.E51K 0.20 tolerated(0.22) benign(0.003) TCGA-D3-A5GO-06 8 68934283 68934283 C T PREX2 Missense_Mutation p.R117C 0.35 tolerated(0.2) benign(0.002) TCGA-D3-A5GO-06 8 69020458 69020458 G A PREX2 Missense_Mutation p.E944K 0.37 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GO-06 8 69434172 69434172 G A C8orf34 Missense_Mutation p.E302K 0.37 deleterious(0.04) possibly_damaging(0.69) TCGA-D3-A5GO-06 8 70476323 70476323 G A SULF1 Missense_Mutation p.R38Q 0.36 deleterious(0) benign(0.266) TCGA-D3-A5GO-06 8 72211898 72211898 G A EYA1 Missense_Mutation p.S205F 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GO-06 8 73479927 73479927 C T KCNB2 5'UTR 0.43 TCGA-D3-A5GO-06 8 73993428 73993428 C T SBSPON Missense_Mutation p.E79K 0.39 deleterious(0.02) possibly_damaging(0.465) TCGA-D3-A5GO-06 8 79629773 79629773 T A ZC2HC1A 3'UTR 0.53 TCGA-D3-A5GO-06 8 79645919 79645919 C T IL7 3'UTR 0.36 TCGA-D3-A5GO-06 8 82441737 82441737 T A FABP12 Missense_Mutation p.N61I 0.46 deleterious(0.01) benign(0.401) TCGA-D3-A5GO-06 8 87751949 87751949 C T CNGB3 Missense_Mutation p.E49K 0.44 tolerated(0.12) benign(0.008) TCGA-D3-A5GO-06 8 8887305 8887305 C T ERI1 Missense_Mutation p.P271S 0.40 tolerated(0.16) benign(0.09) TCGA-D3-A5GO-06 8 88886007 88886007 C T DCAF4L2 Missense_Mutation p.D65N 0.37 deleterious(0.05) benign(0.109) TCGA-D3-A5GO-06 8 93017335 93017335 C T RUNX1T1 Intron 0.46 TCGA-D3-A5GO-06 8 94777836 94777836 C T TMEM67 Missense_Mutation p.P205S 0.36 tolerated(0.14) benign(0.008) TCGA-D3-A5GO-06 9 101546353 101546353 G C ANKS6 Missense_Mutation p.L332V 0.82 tolerated(0.1) benign(0.065) TCGA-D3-A5GO-06 9 101832181 101832181 G A COL15A1 3'UTR 0.70 TCGA-D3-A5GO-06 9 104239417 104239417 C T TMEM246 5'UTR 1.00 TCGA-D3-A5GO-06 9 107457245 107457245 G A OR13D1 Nonsense_Mutation p.W181* 0.66 TCGA-D3-A5GO-06 9 112015735 112015735 T C EPB41L4B Missense_Mutation p.H422R 0.79 tolerated(0.23) probably_damaging(0.936) TCGA-D3-A5GO-06 9 113173532 113173532 C T SVEP1 Missense_Mutation p.M2153I 0.67 benign(0.039) TCGA-D3-A5GO-06 9 113431164 113431164 C G MUSK 5'UTR 0.70 TCGA-D3-A5GO-06 9 113449398 113449398 C T MUSK Missense_Mutation p.L70F 0.50 tolerated_low_confidence(0.33) benign(0.422) TCGA-D3-A5GO-06 9 115337401 115337401 C T KIAA1958 Silent p.P347P 0.69 TCGA-D3-A5GO-06 9 116359103 116359103 C T RGS3 Missense_Mutation p.T1156M 0.59 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 9 118138958 118138958 G A DEC1 5'UTR 0.55 TCGA-D3-A5GO-06 9 123744131 123744131 G A C5 Silent p.C1159C 0.88 TCGA-D3-A5GO-06 9 125330206 125330206 G A OR1L8 Missense_Mutation p.P184L 0.52 deleterious(0.02) probably_damaging(0.969) TCGA-D3-A5GO-06 9 125424618 125424618 G A OR1L1 Missense_Mutation p.M208I 0.65 tolerated(0.78) benign(0.01) TCGA-D3-A5GO-06 9 125512113 125512113 G A OR1L6 5'Flank 0.75 TCGA-D3-A5GO-06 9 126520032 126520032 G A DENND1A Silent p.F84F 0.90 TCGA-D3-A5GO-06 9 127572460 127572460 G A OLFML2A Silent p.G576G 0.39 TCGA-D3-A5GO-06 9 127619824 127619824 G A WDR38 Missense_Mutation p.G287E 0.68 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GO-06 9 129870846 129870846 G A ANGPTL2 Silent p.T55T 0.79 TCGA-D3-A5GO-06 9 130511487 130511487 G A SH2D3C Intron 0.57 TCGA-D3-A5GO-06 9 131133601 131133601 G A URM1 5'UTR 0.67 TCGA-D3-A5GO-06 9 135140315 135140320 TAATAA - SETX In_Frame_Del p.I2447_I2448del 0.64 TCGA-D3-A5GO-06 9 136291092 136291092 C T ADAMTS13 Missense_Mutation p.S150F 0.69 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GO-06 9 138416708 138416708 G A LCN1 Missense_Mutation p.E146K 0.56 deleterious(0.01) benign(0.033) TCGA-D3-A5GO-06 9 140777444 140777444 C T CACNA1B Intron 0.11 TCGA-D3-A5GO-06 9 14775954 14775954 G A FREM1 Nonsense_Mutation p.Q1564* 0.75 TCGA-D3-A5GO-06 9 33886894 33886894 C T UBE2R2 Missense_Mutation p.P65S 0.62 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GO-06 9 34490385 34490385 G A DNAI1 Missense_Mutation p.E174K 0.75 tolerated(0.23) benign(0.003) TCGA-D3-A5GO-06 9 35547741 35547741 C T RUSC2 Missense_Mutation p.S408L 0.70 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GO-06 9 35689958 35689958 G A TPM2 5'UTR 0.76 TCGA-D3-A5GO-06 9 35800784 35800784 C T NPR2 Missense_Mutation p.P433S 0.71 deleterious(0) probably_damaging(0.957) TCGA-D3-A5GO-06 9 37521635 37521635 C T FBXO10 Missense_Mutation p.E711K 0.77 deleterious(0.01) benign(0.113) TCGA-D3-A5GO-06 9 406981 406981 G A DOCK8 Missense_Mutation p.D1148N 0.69 deleterious(0.02) possibly_damaging(0.887) TCGA-D3-A5GO-06 9 43627122 43627122 G A SPATA31A6 Missense_Mutation p.P522L 0.37 tolerated(0.07) benign(0.334) TCGA-D3-A5GO-06 9 71509462 71509462 G A PIP5K1B Missense_Mutation p.D227N 0.75 deleterious(0.03) possibly_damaging(0.565) TCGA-D3-A5GO-06 9 72758635 72758635 A C MAMDC2 Missense_Mutation p.E435A 0.64 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A5GO-06 9 75435858 75435858 C T TMC1 Missense_Mutation p.P622S 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 9 78925636 78925636 G A PCSK5 Silent p.R1224R 0.57 TCGA-D3-A5GO-06 9 79326062 79326062 G A PRUNE2 Silent p.A376A 0.69 TCGA-D3-A5GO-06 9 79520963 79520963 G A PRUNE2 5'UTR 0.67 TCGA-D3-A5GO-06 9 8486025 8486025 G T PTPRD Missense_Mutation p.T931N 0.44 tolerated(0.1) benign(0.341) TCGA-D3-A5GO-06 9 88842279 88842279 C T C9orf153 Missense_Mutation p.R92K 0.72 tolerated_low_confidence(0.14) possibly_damaging(0.567) TCGA-D3-A5GO-06 9 94519598 94519598 C T ROR2 Missense_Mutation p.G140E 0.65 tolerated(0.1) possibly_damaging(0.899) TCGA-D3-A5GO-06 9 94519599 94519599 C T ROR2 Missense_Mutation p.G140R 0.63 tolerated(0.14) possibly_damaging(0.529) TCGA-D3-A5GO-06 X 100497448 100497448 G A DRP2 Nonsense_Mutation p.W321* 0.82 TCGA-D3-A5GO-06 X 100630261 100630261 C T BTK Silent p.V4V 0.75 TCGA-D3-A5GO-06 X 101159207 101159207 G A ZMAT1 Missense_Mutation p.S73L 0.89 tolerated(0.07) benign(0.376) TCGA-D3-A5GO-06 X 101382460 101382460 G A TCEAL2 Missense_Mutation p.D220N 0.78 tolerated(0.17) possibly_damaging(0.539) TCGA-D3-A5GO-06 X 102005056 102005056 C T BHLHB9 Missense_Mutation p.S378F 0.96 tolerated(0.09) benign(0.125) TCGA-D3-A5GO-06 X 105277523 105277523 G A SERPINA7 Silent p.L406L 0.36 TCGA-D3-A5GO-06 X 106845425 106845425 C T FRMPD3 Missense_Mutation p.P1419S 0.80 deleterious(0.01) possibly_damaging(0.637) TCGA-D3-A5GO-06 X 107978058 107978058 C T IRS4 Missense_Mutation p.G506D 0.37 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GO-06 X 108636170 108636170 C T GUCY2F Missense_Mutation p.E847K 0.84 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A5GO-06 X 11316847 11316847 C T AMELX Silent p.S122S 0.84 TCGA-D3-A5GO-06 X 114082662 114082662 C T HTR2C Missense_Mutation p.S149L 0.79 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GO-06 X 114141163 114141163 C T HTR2C Missense_Mutation p.P188S 0.67 tolerated(0.07) probably_damaging(0.951) TCGA-D3-A5GO-06 X 117035816 117035816 C T KLHL13 Missense_Mutation p.G490E 0.79 deleterious(0.04) benign(0.221) TCGA-D3-A5GO-06 X 123657311 123657311 G A TENM1 Missense_Mutation p.S979F 0.83 deleterious(0) benign(0.24) TCGA-D3-A5GO-06 X 130217164 130217164 C T ARHGAP36 Silent p.T93T 0.84 TCGA-D3-A5GO-06 X 130409144 130409144 C T IGSF1 Missense_Mutation p.E1106K 0.82 tolerated(0.26) benign(0.004) TCGA-D3-A5GO-06 X 130410155 130410155 G A IGSF1 Silent p.I897I 0.85 TCGA-D3-A5GO-06 X 130678411 130678411 C T OR13H1 Missense_Mutation p.R122C 0.84 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A5GO-06 X 131218612 131218612 C T FRMD7 Missense_Mutation p.G216E 0.83 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 X 132458544 132458544 C T GPC4 Missense_Mutation p.E114K 0.47 tolerated(0.37) possibly_damaging(0.484) TCGA-D3-A5GO-06 X 134947928 134947928 C T CT45A5 Missense_Mutation p.E133K 0.73 deleterious(0) probably_damaging(0.975) TCGA-D3-A5GO-06 X 135429708 135429708 G A GPR112 Silent p.K1281K 0.90 TCGA-D3-A5GO-06 X 135960094 135960094 G A RBMX Missense_Mutation p.P123L 0.79 tolerated(0.05) possibly_damaging(0.617) TCGA-D3-A5GO-06 X 140994790 140994790 C T MAGEC1 Missense_Mutation p.P534S 0.76 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-D3-A5GO-06 X 150348412 150348412 C T GPR50 Silent p.I119I 0.83 TCGA-D3-A5GO-06 X 151869890 151869890 C T MAGEA6 Nonsense_Mutation p.Q194* 0.87 TCGA-D3-A5GO-06 X 153590823 153590824 - C FLNA Frame_Shift_Ins p.A843Gfs*12 0.45 TCGA-D3-A5GO-06 X 153691743 153691743 G T PLXNA3 Missense_Mutation p.D443Y 0.75 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GO-06 X 153716274 153716274 C A SLC10A3 Missense_Mutation p.V336L 0.72 tolerated(0.52) benign(0.096) TCGA-D3-A5GO-06 X 154134829 154134829 G A F8 Missense_Mutation p.P1747S 0.74 tolerated(0.62) benign(0.021) TCGA-D3-A5GO-06 X 154189432 154189432 C T F8 Silent p.K485K 0.90 TCGA-D3-A5GO-06 X 1584326 1584326 G A P2RY8 3'UTR 0.18 TCGA-D3-A5GO-06 X 16170693 16170693 C T GRPR Silent p.S360S 0.70 TCGA-D3-A5GO-06 X 16170694 16170694 C T GRPR Missense_Mutation p.L361F 0.70 tolerated(0.17) benign(0.001) TCGA-D3-A5GO-06 X 17819456 17819456 G A RAI2 Silent p.V225V 0.86 TCGA-D3-A5GO-06 X 29973937 29973937 A G IL1RAPL1 Nonstop_Mutation p.*697Wext*55 0.89 TCGA-D3-A5GO-06 X 31090062 31090062 G A FTHL17 Silent p.T3T 0.40 TCGA-D3-A5GO-06 X 3235257 3235257 C T MXRA5 Silent p.R2155R 0.76 TCGA-D3-A5GO-06 X 3240559 3240559 A T MXRA5 Missense_Mutation p.I1056N 0.88 tolerated(0.08) benign(0.212) TCGA-D3-A5GO-06 X 34148955 34148955 C T FAM47A Missense_Mutation p.E481K 0.79 deleterious(0.01) benign(0.298) TCGA-D3-A5GO-06 X 34149336 34149336 G A FAM47A Missense_Mutation p.P354S 0.33 deleterious(0.04) probably_damaging(0.986) TCGA-D3-A5GO-06 X 35820576 35820576 G A MAGEB16 Missense_Mutation p.S88N 0.89 tolerated(0.26) benign(0.027) TCGA-D3-A5GO-06 X 39934346 39934346 G A BCOR Missense_Mutation p.P85S 0.68 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A5GO-06 X 40456805 40456805 C T ATP6AP2 Silent p.N141N 0.67 TCGA-D3-A5GO-06 X 40456825 40456825 C T ATP6AP2 Missense_Mutation p.S148L 0.69 deleterious(0) benign(0.271) TCGA-D3-A5GO-06 X 47775351 47775351 C G ZNF81 Missense_Mutation p.H436D 0.85 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 X 54784964 54784964 C T ITIH6 Missense_Mutation p.E515K 0.74 tolerated(0.06) benign(0.055) TCGA-D3-A5GO-06 X 57515256 57515256 C T FAAH2 Missense_Mutation p.P497L 0.83 deleterious(0) probably_damaging(1) TCGA-D3-A5GO-06 X 63410327 63410327 G A AMER1 Missense_Mutation p.S947F 0.62 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GO-06 X 65423252 65423252 G A HEPH Silent p.G762G 0.62 TCGA-D3-A5GO-06 X 66905910 66905910 G A AR Silent p.R609R 0.84 TCGA-D3-A5GO-06 X 69615673 69615673 C T KIF4A Silent p.L795L 0.68 TCGA-D3-A5GO-06 X 71359707 71359707 C T NHSL2 Missense_Mutation p.S770L 0.96 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GO-06 X 71825251 71825251 C T PHKA1 Splice_Site p.X896_splice 0.91 TCGA-D3-A5GO-06 X 72667275 72667275 G A CDX4 Missense_Mutation p.M62I 0.87 tolerated(0.46) benign(0.003) TCGA-D3-A5GO-06 X 73043728 73043728 C T XIST RNA 0.80 TCGA-D3-A5GO-06 X 73046489 73046489 G A XIST RNA 0.78 TCGA-D3-A5GO-06 X 76225911 76225911 G A MIR325 RNA 0.82 TCGA-D3-A5GO-06 X 77244168 77244168 C T ATP7A Missense_Mutation p.S184L 0.84 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GO-06 X 77913440 77913440 C T ZCCHC5 Missense_Mutation p.D160N 0.76 tolerated(0.43) benign(0.007) TCGA-D3-A5GO-06 X 78216755 78216755 C T P2RY10 Silent p.F246F 0.82 TCGA-D3-A5GO-06 X 8138246 8138246 C T VCX2 Missense_Mutation p.E83K 0.83 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GO-06 X 82763888 82763888 G A POU3F4 Missense_Mutation p.E186K 0.95 deleterious(0) probably_damaging(0.977) TCGA-D3-A5GO-06 X 83128806 83128806 A C CYLC1 Missense_Mutation p.K364Q 0.67 deleterious(0.02) unknown(0) TCGA-D3-A5GO-06 X 84526289 84526289 C T ZNF711 Silent p.L581L 0.82 TCGA-D3-A5GO-06 X 84526394 84526394 G A ZNF711 Missense_Mutation p.D616N 0.71 deleterious(0.03) possibly_damaging(0.871) TCGA-D3-A5GO-06 X 84526827 84526827 T C ZNF711 Missense_Mutation p.L760P 0.43 deleterious(0.05) benign(0.003) TCGA-D3-A5GO-06 X 84561288 84561288 G C POF1B Missense_Mutation p.L406V 0.71 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GO-06 X 8507797 8507797 G A KAL1 Missense_Mutation p.P453S 0.30 tolerated(0.15) benign(0.062) TCGA-D3-A5GO-06 X 96369745 96369745 A G DIAPH2 Silent p.L790L 0.94 TCGA-D3-A5GO-06 X 99662260 99662260 C T PCDH19 Missense_Mutation p.E446K 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A5GO-06 Y 16952413 16952413 G A NLGN4Y Silent p.L574L 0.66 TCGA-D3-A5GR-06 10 115348828 115348828 T C NRAP Missense_Mutation p.E1700G 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-D3-A5GR-06 10 118236722 118236722 C T PNLIPRP3 3'UTR 0.39 TCGA-D3-A5GR-06 10 24813451 24813451 C T KIAA1217 Missense_Mutation p.H886Y 0.29 deleterious(0) possibly_damaging(0.874) TCGA-D3-A5GR-06 10 25465046 25465046 C T GPR158 Missense_Mutation p.H233Y 0.46 tolerated(0.87) benign(0.407) TCGA-D3-A5GR-06 10 3155369 3155369 C T PFKP Nonsense_Mutation p.Q405* 0.18 TCGA-D3-A5GR-06 10 37508601 37508601 C T ANKRD30A Nonsense_Mutation p.Q1265* 0.24 TCGA-D3-A5GR-06 10 47000033 47000033 G A GPRIN2 Missense_Mutation p.D385N 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 10 55780157 55780157 C A PCDH15 Missense_Mutation p.G849V 0.25 tolerated(0.63) possibly_damaging(0.549) TCGA-D3-A5GR-06 10 69299326 69299326 C T CTNNA3 Missense_Mutation p.V132M 0.25 deleterious(0) possibly_damaging(0.86) TCGA-D3-A5GR-06 10 78647083 78647083 G A KCNMA1 Missense_Mutation p.R1201W 0.30 deleterious(0) probably_damaging(0.946) TCGA-D3-A5GR-06 10 82098285 82098285 C T DYDC1 Missense_Mutation p.D148N 0.30 deleterious(0.02) benign(0.084) TCGA-D3-A5GR-06 10 88123744 88123744 G A GRID1 Silent p.S63S 0.27 TCGA-D3-A5GR-06 10 95718511 95718511 C T PIPSL RNA 0.46 TCGA-D3-A5GR-06 10 96580325 96580325 G - CYP2C19 Frame_Shift_Del p.T299Qfs*8 0.21 TCGA-D3-A5GR-06 10 96741118 96741118 C T CYP2C9 Silent p.L380L 0.30 TCGA-D3-A5GR-06 11 124252721 124252721 G A OR8B2 Silent p.I173I 0.32 TCGA-D3-A5GR-06 11 125830840 125830840 G A CDON Silent p.T1287T 0.09 TCGA-D3-A5GR-06 11 4095772 4095772 G T STIM1 Nonsense_Mutation p.E278* 0.31 TCGA-D3-A5GR-06 11 45226304 45226304 G A PRDM11 Missense_Mutation p.D177N 0.18 deleterious(0.04) probably_damaging(0.972) TCGA-D3-A5GR-06 11 47595161 47595161 G A KBTBD4 Missense_Mutation p.S309F 0.27 tolerated(0.29) benign(0.23) TCGA-D3-A5GR-06 11 49974793 49974793 C A OR4C13 Nonsense_Mutation p.Y273* 0.11 TCGA-D3-A5GR-06 11 55735766 55735766 G A OR10AG1 Silent p.S58S 0.09 TCGA-D3-A5GR-06 11 55905123 55905123 C T OR8J3 Silent p.Q24Q 0.33 TCGA-D3-A5GR-06 11 60268635 60268635 C G MS4A12 Missense_Mutation p.P132A 0.23 tolerated(0.07) possibly_damaging(0.542) TCGA-D3-A5GR-06 11 61026422 61026422 G A VWCE Missense_Mutation p.P865S 0.38 tolerated_low_confidence(0.18) benign(0.009) TCGA-D3-A5GR-06 11 63137911 63137911 C A SLC22A9 Nonsense_Mutation p.S128* 0.17 TCGA-D3-A5GR-06 11 63970980 63970980 C T STIP1 Missense_Mutation p.P482L 0.17 deleterious(0) benign(0.414) TCGA-D3-A5GR-06 11 69457861 69457861 C G CCND1 Silent p.R87R 0.14 TCGA-D3-A5GR-06 11 70318928 70318928 C T SHANK2 3'UTR 0.25 TCGA-D3-A5GR-06 11 76892609 76892609 G A MYO7A Missense_Mutation p.E960K 0.14 tolerated(0.09) possibly_damaging(0.631) TCGA-D3-A5GR-06 11 89133531 89133531 G A NOX4 Missense_Mutation p.S288F 0.24 tolerated(0.06) possibly_damaging(0.841) TCGA-D3-A5GR-06 12 101876615 101876615 C T SPIC Silent p.L86L 0.23 TCGA-D3-A5GR-06 12 102008306 102008306 G A MYBPC1 Missense_Mutation p.E20K 0.21 tolerated(0.55) possibly_damaging(0.678) TCGA-D3-A5GR-06 12 108013893 108013893 C T BTBD11 Silent p.L861L 0.09 TCGA-D3-A5GR-06 12 112684754 112684754 G A HECTD4 Silent p.A1342A 0.17 TCGA-D3-A5GR-06 12 118198985 118198985 G A KSR2 Missense_Mutation p.P273S 0.26 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GR-06 12 125834234 125834234 A T TMEM132B Missense_Mutation p.I97F 0.28 deleterious(0) possibly_damaging(0.558) TCGA-D3-A5GR-06 12 130898676 130898676 G A RIMBP2 Silent p.I882I 0.26 TCGA-D3-A5GR-06 12 13232795 13232795 C T KIAA1467 Missense_Mutation p.P572L 0.11 tolerated(0.06) benign(0.034) TCGA-D3-A5GR-06 12 14577448 14577448 C T ATF7IP Missense_Mutation p.S200F 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-D3-A5GR-06 12 2763037 2763037 T C CACNA1C Missense_Mutation p.F1419L 0.10 deleterious(0) possibly_damaging(0.765) TCGA-D3-A5GR-06 12 3806169 3806169 G A EFCAB4B 5'UTR 0.33 TCGA-D3-A5GR-06 12 40114658 40114658 G A C12orf40 Missense_Mutation p.E522K 0.07 deleterious(0.02) benign(0.187) TCGA-D3-A5GR-06 12 46285794 46285794 G A ARID2 Missense_Mutation p.D1688N 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A5GR-06 12 47629267 47629267 G A PCED1B Missense_Mutation p.E141K 0.25 tolerated(0.25) benign(0.003) TCGA-D3-A5GR-06 12 4920414 4920414 G A KCNA6 Missense_Mutation p.D403N 0.08 tolerated(0.37) possibly_damaging(0.54) TCGA-D3-A5GR-06 12 49491450 49491450 G A LMBR1L 3'UTR 0.15 TCGA-D3-A5GR-06 12 49943973 49943973 A G KCNH3 Silent p.A593A 0.19 TCGA-D3-A5GR-06 12 53689235 53689235 G A PFDN5 5'UTR 0.16 TCGA-D3-A5GR-06 12 55641074 55641074 G T OR6C74 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-D3-A5GR-06 12 657266 657266 G A B4GALNT3 Missense_Mutation p.A262T 0.17 deleterious(0) probably_damaging(0.96) TCGA-D3-A5GR-06 12 7649409 7649409 C T CD163 Missense_Mutation p.D367N 0.17 deleterious(0.04) benign(0.32) TCGA-D3-A5GR-06 12 77158082 77158082 G A ZDHHC17 Silent p.A22A 0.18 TCGA-D3-A5GR-06 12 77158083 77158083 G A ZDHHC17 Missense_Mutation p.G23S 0.18 tolerated_low_confidence(0.22) probably_damaging(0.986) TCGA-D3-A5GR-06 12 81528669 81528669 G A ACSS3 Missense_Mutation p.M177I 0.23 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GR-06 12 9096120 9096120 G A M6PR Silent p.N155N 0.26 TCGA-D3-A5GR-06 13 29599709 29599709 G A MTUS2 Missense_Mutation p.E302K 0.21 deleterious(0.01) benign(0.124) TCGA-D3-A5GR-06 13 42142203 42142203 G A VWA8 3'UTR 0.50 TCGA-D3-A5GR-06 14 105420995 105420995 G A AHNAK2 Nonsense_Mutation p.Q265* 0.28 TCGA-D3-A5GR-06 14 20528830 20528830 C T OR4L1 Silent p.T209T 0.31 TCGA-D3-A5GR-06 14 21501984 21501984 C T RNASE13 Missense_Mutation p.G155E 0.34 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D3-A5GR-06 14 22580965 22580965 G A TRAV25 Missense_Mutation p.G103E 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GR-06 14 31074856 31074856 C T G2E3 Missense_Mutation p.P386S 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 14 38679227 38679227 C T SSTR1 Silent p.L211L 0.24 TCGA-D3-A5GR-06 14 38724354 38724354 C T CLEC14A Missense_Mutation p.G292R 0.34 tolerated(0.11) benign(0.085) TCGA-D3-A5GR-06 14 70235600 70235600 C T SRSF5 Nonsense_Mutation p.R95* 0.29 TCGA-D3-A5GR-06 14 70713652 70713652 C T ADAM21P1 RNA 0.18 TCGA-D3-A5GR-06 14 75266095 75266095 C T YLPM1 Silent p.F1365F 0.28 TCGA-D3-A5GR-06 14 94912739 94912739 C T SERPINA11 Silent p.G282G 0.31 TCGA-D3-A5GR-06 14 95590883 95590883 C G DICER1 Missense_Mutation p.R342S 0.44 tolerated(0.4) possibly_damaging(0.649) TCGA-D3-A5GR-06 15 25456847 25456847 G A SNORD115-22 3'Flank 0.15 TCGA-D3-A5GR-06 15 25967044 25967044 T C ATP10A Missense_Mutation p.I375V 0.27 tolerated(0.08) benign(0.308) TCGA-D3-A5GR-06 15 56923902 56923902 C T ZNF280D Missense_Mutation p.E912K 0.06 deleterious(0) probably_damaging(0.911) TCGA-D3-A5GR-06 15 63084959 63084959 C T TLN2 Silent p.I1952I 0.21 TCGA-D3-A5GR-06 15 69331224 69331224 C T NOX5 Missense_Mutation p.P467S 0.15 tolerated(0.16) benign(0.117) TCGA-D3-A5GR-06 15 85487807 85487807 C T SLC28A1 Silent p.V558V 0.10 TCGA-D3-A5GR-06 16 1035010 1035010 C G SOX8 Missense_Mutation p.P322R 0.19 tolerated(0.09) benign(0.141) TCGA-D3-A5GR-06 16 11001446 11001446 G C CIITA Silent p.P699P 0.21 TCGA-D3-A5GR-06 16 15818711 15818711 C T NDE1 3'UTR 0.25 TCGA-D3-A5GR-06 16 15818712 15818712 C T NDE1 3'UTR 0.25 TCGA-D3-A5GR-06 16 30495205 30495205 C T ITGAL Silent p.I260I 0.18 TCGA-D3-A5GR-06 16 3367219 3367219 C T ZNF75A Missense_Mutation p.H81Y 0.22 tolerated(0.2) benign(0.105) TCGA-D3-A5GR-06 16 4927090 4927090 C T UBN1 Silent p.S1081S 0.23 TCGA-D3-A5GR-06 16 51173343 51173343 G A SALL1 Silent p.S930S 0.25 TCGA-D3-A5GR-06 16 70977848 70977848 G A HYDIN Missense_Mutation p.S2179F 0.29 benign(0.082) TCGA-D3-A5GR-06 16 72821124 72821124 T A ZFHX3 Missense_Mutation p.D3684V 0.21 unknown(0) TCGA-D3-A5GR-06 17 10402288 10402288 T C MYH1 Intron 0.40 TCGA-D3-A5GR-06 17 10408573 10408573 C T MYH1 Missense_Mutation p.R781Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GR-06 17 10436695 10436695 C T MYH2 Missense_Mutation p.R783Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 17 11597302 11597302 G A DNAH9 Missense_Mutation p.D1578N 0.37 benign(0.008) TCGA-D3-A5GR-06 17 31618509 31618509 C T ASIC2 Missense_Mutation p.D209N 0.43 tolerated(0.94) benign(0.29) TCGA-D3-A5GR-06 17 38567631 38567631 C T TOP2A Missense_Mutation p.G347D 0.34 tolerated(0.05) possibly_damaging(0.664) TCGA-D3-A5GR-06 17 39637059 39637059 C T KRT35 Silent p.E97E 0.46 TCGA-D3-A5GR-06 17 40458352 40458352 C T STAT5A Missense_Mutation p.R523W 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A5GR-06 17 60813279 60813279 G A MARCH10 Intron 0.43 TCGA-D3-A5GR-06 17 66938175 66938175 T C ABCA8 Translation_Start_Site p.M1? 0.49 deleterious(0) possibly_damaging(0.841) TCGA-D3-A5GR-06 17 7329646 7329646 C A C17orf74 Missense_Mutation p.F112L 0.33 tolerated(1) possibly_damaging(0.682) TCGA-D3-A5GR-06 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.41 tolerated(0.11) benign(0.308) TCGA-D3-A5GR-06 17 79077821 79077821 C T BAIAP2 Missense_Mutation p.P327S 0.42 tolerated(0.2) benign(0.009) TCGA-D3-A5GR-06 17 79077822 79077822 C T BAIAP2 Missense_Mutation p.P327L 0.42 tolerated(0.13) benign(0.005) TCGA-D3-A5GR-06 18 10471643 10471643 A T APCDD1 Missense_Mutation p.Y120F 0.15 tolerated(0.15) benign(0.331) TCGA-D3-A5GR-06 18 31323671 31323671 G A ASXL3 Missense_Mutation p.G1287R 0.15 possibly_damaging(0.642) TCGA-D3-A5GR-06 18 31323740 31323740 G A ASXL3 Missense_Mutation p.E1310K 0.08 benign(0.073) TCGA-D3-A5GR-06 18 3508582 3508582 A C DLGAP1 Missense_Mutation p.C853G 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-D3-A5GR-06 18 61468138 61468138 G A SERPINB7 Silent p.R212R 0.17 TCGA-D3-A5GR-06 18 66678171 66678171 G A CCDC102B Missense_Mutation p.E422K 0.16 deleterious(0.04) probably_damaging(0.964) TCGA-D3-A5GR-06 19 10251809 10251809 A G DNMT1 Silent p.P1122P 0.18 TCGA-D3-A5GR-06 19 10662725 10662725 C T ATG4D Silent p.D350D 0.21 TCGA-D3-A5GR-06 19 12638117 12638117 G A ZNF564 Nonsense_Mutation p.R269* 0.22 TCGA-D3-A5GR-06 19 15198369 15198369 C T OR1I1 Nonsense_Mutation p.Q165* 0.11 TCGA-D3-A5GR-06 19 19136660 19136660 G A SUGP2 Missense_Mutation p.P166L 0.16 tolerated(0.09) possibly_damaging(0.535) TCGA-D3-A5GR-06 19 35862350 35862350 C T GPR42 Missense_Mutation p.P30L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 19 39667306 39667306 C T PAK4 Missense_Mutation p.P479L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 19 42315346 42315346 G A CEACAM3 3'UTR 0.39 TCGA-D3-A5GR-06 19 43372193 43372193 C T PSG1 3'UTR 0.24 TCGA-D3-A5GR-06 19 44252033 44252033 G C SMG9 Missense_Mutation p.P81R 0.20 tolerated(0.64) benign(0.022) TCGA-D3-A5GR-06 19 4513472 4513472 C T PLIN4 Missense_Mutation p.G153D 0.18 deleterious(0) possibly_damaging(0.452) TCGA-D3-A5GR-06 19 46443427 46443427 G A NOVA2 Silent p.A391A 0.27 TCGA-D3-A5GR-06 19 51506485 51506485 C T KLK9 Missense_Mutation p.G212E 0.26 deleterious(0.01) possibly_damaging(0.471) TCGA-D3-A5GR-06 19 53856980 53856980 C T ZNF845 3'UTR 0.25 TCGA-D3-A5GR-06 19 55085369 55085369 G A LILRA2 Silent p.L8L 0.17 TCGA-D3-A5GR-06 19 56477635 56477635 G A NLRP8 Missense_Mutation p.G757E 0.22 tolerated(1) benign(0.001) TCGA-D3-A5GR-06 19 56952654 56952654 A T ZNF667 Silent p.L570L 0.29 TCGA-D3-A5GR-06 19 58187825 58187825 G A ZSCAN4 Silent p.V104V 0.17 TCGA-D3-A5GR-06 19 6183197 6183197 G A ACSBG2 Silent p.L412L 0.18 TCGA-D3-A5GR-06 19 8320588 8320588 C T CERS4 Missense_Mutation p.T130I 0.24 deleterious(0.04) possibly_damaging(0.905) TCGA-D3-A5GR-06 19 9577368 9577368 G A ZNF560 Missense_Mutation p.S752F 0.24 tolerated(0.33) possibly_damaging(0.485) TCGA-D3-A5GR-06 19 984345 984345 G A WDR18 5'UTR 0.23 TCGA-D3-A5GR-06 1 103381207 103381207 G A COL11A1 Missense_Mutation p.P1266S 0.12 unknown(0) TCGA-D3-A5GR-06 1 109813882 109813882 C T CELSR2 Missense_Mutation p.A2547V 0.07 tolerated(0.11) benign(0.009) TCGA-D3-A5GR-06 1 110033910 110033910 C T ATXN7L2 Silent p.S575S 0.12 TCGA-D3-A5GR-06 1 115142972 115142972 G A DENND2C Missense_Mutation p.S653F 0.23 deleterious(0) possibly_damaging(0.493) TCGA-D3-A5GR-06 1 120458507 120458507 G A NOTCH2 Missense_Mutation p.P2280S 0.13 tolerated(0.29) benign(0.005) TCGA-D3-A5GR-06 1 12463901 12463901 C T VPS13D Missense_Mutation p.L3969F 0.14 benign(0.393) TCGA-D3-A5GR-06 1 145538785 145538785 C T ITGA10 Missense_Mutation p.P966S 0.15 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GR-06 1 156913742 156913742 G A ARHGEF11 Missense_Mutation p.R1074C 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 1 158449913 158449913 C T OR10R2 Silent p.F82F 0.13 TCGA-D3-A5GR-06 1 159922212 159922212 G A SLAMF9 Silent p.S168S 0.27 TCGA-D3-A5GR-06 1 160145964 160145964 G A ATP1A4 Missense_Mutation p.M798I 0.13 tolerated(0.69) benign(0) TCGA-D3-A5GR-06 1 166974497 166974497 C T MAEL Silent p.I236I 0.31 TCGA-D3-A5GR-06 1 182993136 182993136 G A LAMC1 Silent p.G95G 0.09 TCGA-D3-A5GR-06 1 200943879 200943879 T C KIF21B Missense_Mutation p.I1593V 0.18 tolerated(0.21) benign(0.105) TCGA-D3-A5GR-06 1 203194942 203194942 C T CHIT1 Missense_Mutation p.E38K 0.09 tolerated(0.89) benign(0.007) TCGA-D3-A5GR-06 1 209776595 209776595 C T CAMK1G Silent p.I86I 0.18 TCGA-D3-A5GR-06 1 235967804 235967804 C T LYST Silent p.K1185K 0.10 TCGA-D3-A5GR-06 1 237060364 237060366 CTT - MTR In_Frame_Del p.F1220del 0.10 TCGA-D3-A5GR-06 1 247586553 247586553 C T NLRP3 Missense_Mutation p.S102L 0.09 tolerated(0.21) benign(0.022) TCGA-D3-A5GR-06 1 247588827 247588827 G A NLRP3 Silent p.E694E 0.08 TCGA-D3-A5GR-06 1 248005106 248005106 G A OR11L1 Silent p.F31F 0.28 TCGA-D3-A5GR-06 1 248202305 248202305 G T OR2L2 Missense_Mutation p.V246L 0.15 deleterious(0) possibly_damaging(0.896) TCGA-D3-A5GR-06 1 248790153 248790153 C T OR2T11 Missense_Mutation p.A93T 0.12 deleterious(0) possibly_damaging(0.479) TCGA-D3-A5GR-06 1 36934795 36934795 C T CSF3R Missense_Mutation p.G513E 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 1 41503135 41503135 G A SCMH1 Missense_Mutation p.P516L 0.26 tolerated(0.07) benign(0.017) TCGA-D3-A5GR-06 1 41503136 41503136 G A SCMH1 Missense_Mutation p.P516S 0.26 tolerated(0.51) benign(0.005) TCGA-D3-A5GR-06 1 42045429 42045429 G A HIVEP3 Silent p.S1680S 0.32 TCGA-D3-A5GR-06 1 47280893 47280893 G A CYP4B1 Missense_Mutation p.E344K 0.09 tolerated(0.07) benign(0.054) TCGA-D3-A5GR-06 1 52703360 52703360 G A ZFYVE9 Missense_Mutation p.G91R 0.28 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-D3-A5GR-06 1 55277523 55277523 G A C1orf177 Silent p.L179L 0.31 TCGA-D3-A5GR-06 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.12 TCGA-D3-A5GR-06 20 20278860 20278860 G A C20orf26 Silent p.G1084G 0.32 TCGA-D3-A5GR-06 20 210089 210089 G A DEFB129 Missense_Mutation p.E77K 0.15 tolerated(0.28) benign(0.017) TCGA-D3-A5GR-06 20 2843464 2843464 C T VPS16 Silent p.F405F 0.19 TCGA-D3-A5GR-06 20 30784467 30784467 G A PLAGL2 Missense_Mutation p.P427S 0.40 tolerated(0.14) benign(0.004) TCGA-D3-A5GR-06 20 33568917 33568917 G A MYH7B Intron 0.39 TCGA-D3-A5GR-06 20 34575343 34575343 C T CNBD2 Missense_Mutation p.S248F 0.25 deleterious(0.01) probably_damaging(0.959) TCGA-D3-A5GR-06 20 44048994 44048994 C T PIGT Silent p.F264F 0.31 TCGA-D3-A5GR-06 20 44828153 44828153 G A CDH22 Silent p.I444I 0.34 TCGA-D3-A5GR-06 20 5844181 5844181 G A C20orf196 3'UTR 0.19 TCGA-D3-A5GR-06 20 5903202 5903202 C T CHGB Nonsense_Mutation p.Q138* 0.14 TCGA-D3-A5GR-06 20 6021900 6021900 G A LRRN4 Missense_Mutation p.S664F 0.24 deleterious(0) possibly_damaging(0.477) TCGA-D3-A5GR-06 20 60581804 60581804 G A TAF4 Missense_Mutation p.P662L 0.38 probably_damaging(0.998) TCGA-D3-A5GR-06 20 9523305 9523305 G A PAK7 Silent p.F644F 0.16 TCGA-D3-A5GR-06 21 40823923 40823923 C T SH3BGR Silent p.P30P 0.32 TCGA-D3-A5GR-06 21 41496161 41496161 G A DSCAM Silent p.I1219I 0.25 TCGA-D3-A5GR-06 21 41539149 41539149 C T DSCAM Nonsense_Mutation p.W1005* 0.21 TCGA-D3-A5GR-06 21 43711659 43711659 C T ABCG1 Missense_Mutation p.P528S 0.08 deleterious(0) possibly_damaging(0.876) TCGA-D3-A5GR-06 22 17472953 17472953 C T GAB4 Silent p.L96L 0.20 TCGA-D3-A5GR-06 22 31333580 31333580 G A MORC2 Silent p.T434T 0.21 TCGA-D3-A5GR-06 22 37770734 37770734 G A ELFN2 Missense_Mutation p.L281F 0.21 tolerated(0.59) benign(0.223) TCGA-D3-A5GR-06 22 38229717 38229717 C T ANKRD54 Missense_Mutation p.G174E 0.10 tolerated(0.07) possibly_damaging(0.609) TCGA-D3-A5GR-06 22 38884115 38884115 C A DDX17 Nonsense_Mutation p.E485* 0.19 TCGA-D3-A5GR-06 22 39813792 39813792 C T TAB1 Missense_Mutation p.S163L 0.30 deleterious(0.01) benign(0.394) TCGA-D3-A5GR-06 22 41735171 41735171 G A ZC3H7B Silent p.E264E 0.17 TCGA-D3-A5GR-06 22 50658898 50658898 G A TUBGCP6 Missense_Mutation p.P1297L 0.14 tolerated(0.42) benign(0.093) TCGA-D3-A5GR-06 2 108488436 108488436 C T RGPD4 Nonsense_Mutation p.Q1326* 0.17 TCGA-D3-A5GR-06 2 128699995 128699995 A C SAP130 Intron 0.13 TCGA-D3-A5GR-06 2 152432838 152432838 G A NEB Missense_Mutation p.R5579C 0.14 probably_damaging(1) TCGA-D3-A5GR-06 2 162929987 162929987 T C DPP4 Missense_Mutation p.K6E 0.25 deleterious(0) benign(0.25) TCGA-D3-A5GR-06 2 170038070 170038070 C T LRP2 Missense_Mutation p.G3353R 0.30 probably_damaging(1) TCGA-D3-A5GR-06 2 179569693 179569693 C T TTN Missense_Mutation p.E9869K 0.18 TCGA-D3-A5GR-06 2 179640507 179640507 C T TTN Silent p.E2028E 0.27 TCGA-D3-A5GR-06 2 179733849 179733849 C T CCDC141 Missense_Mutation p.E797K 0.18 tolerated(0.35) possibly_damaging(0.517) TCGA-D3-A5GR-06 2 179736979 179736979 C T CCDC141 Missense_Mutation p.E654K 0.20 tolerated(0.17) benign(0.085) TCGA-D3-A5GR-06 2 198643759 198643759 G A BOLL Missense_Mutation p.S66F 0.27 deleterious(0) possibly_damaging(0.741) TCGA-D3-A5GR-06 2 207530663 207530663 C T DYTN Silent p.R357R 0.12 TCGA-D3-A5GR-06 2 209108282 209108282 A G IDH1 Silent p.I189I 0.22 TCGA-D3-A5GR-06 2 209142372 209142372 C T PIKFYVE Nonsense_Mutation p.Q185* 0.25 TCGA-D3-A5GR-06 2 211512710 211512710 C T CPS1 Missense_Mutation p.R1095C 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 2 21237426 21237426 G T APOB Missense_Mutation p.P1246T 0.29 probably_damaging(0.996) TCGA-D3-A5GR-06 2 212589846 212589846 T C ERBB4 Silent p.R232R 0.09 TCGA-D3-A5GR-06 2 231775087 231775087 C T GPR55 Missense_Mutation p.M197I 0.31 tolerated(0.39) benign(0.03) TCGA-D3-A5GR-06 2 233990554 233990554 C T INPP5D Missense_Mutation p.P150L 0.21 tolerated(0.26) benign(0.001) TCGA-D3-A5GR-06 2 237395516 237395516 C T IQCA1 Missense_Mutation p.E226K 0.33 tolerated(1) benign(0) TCGA-D3-A5GR-06 2 242007270 242007270 C T SNED1 Silent p.T1034T 0.31 TCGA-D3-A5GR-06 2 242684183 242684183 C T D2HGDH Silent p.G248G 0.23 TCGA-D3-A5GR-06 2 30961109 30961109 G A CAPN13 Silent p.L549L 0.26 TCGA-D3-A5GR-06 2 32655963 32655963 C T BIRC6 Missense_Mutation p.T1018I 0.22 benign(0.063) TCGA-D3-A5GR-06 2 32655964 32655964 C T BIRC6 Silent p.T1018T 0.22 TCGA-D3-A5GR-06 2 48925889 48925889 G A LHCGR Missense_Mutation p.S244F 0.14 tolerated(0.06) benign(0.048) TCGA-D3-A5GR-06 2 69098179 69098179 G A BMP10 Silent p.I104I 0.17 TCGA-D3-A5GR-06 2 70188781 70188781 G A ASPRV1 Silent p.L14L 0.22 TCGA-D3-A5GR-06 2 71791240 71791240 G C DYSF Missense_Mutation p.R821P 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 2 77745664 77745664 T C LRRTM4 Missense_Mutation p.Y444C 0.06 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 2 85617559 85617559 C T ELMOD3 Missense_Mutation p.P372S 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-D3-A5GR-06 3 11078616 11078616 G A SLC6A1 Silent p.Q588Q 0.26 TCGA-D3-A5GR-06 3 113375371 113375371 G A KIAA2018 Missense_Mutation p.R1720C 0.14 probably_damaging(0.931) TCGA-D3-A5GR-06 3 120760567 120760567 A T STXBP5L Missense_Mutation p.D103V 0.09 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GR-06 3 121340543 121340543 C T FBXO40 Silent p.P89P 0.19 TCGA-D3-A5GR-06 3 121341093 121341093 C T FBXO40 Nonsense_Mutation p.Q273* 0.26 TCGA-D3-A5GR-06 3 121415717 121415717 T A GOLGB1 Missense_Mutation p.N1218I 0.18 possibly_damaging(0.851) TCGA-D3-A5GR-06 3 121437283 121437283 G A GOLGB1 Silent p.V279V 0.18 TCGA-D3-A5GR-06 3 130095608 130095608 C T COL6A5 Missense_Mutation p.S199F 0.28 deleterious(0.01) possibly_damaging(0.872) TCGA-D3-A5GR-06 3 143212502 143212502 C T SLC9A9 Missense_Mutation p.M436I 0.15 deleterious(0.05) probably_damaging(0.937) TCGA-D3-A5GR-06 3 148714585 148714585 C A GYG1 Missense_Mutation p.D125E 0.25 deleterious(0) possibly_damaging(0.681) TCGA-D3-A5GR-06 3 150877801 150877801 C A MED12L Silent p.G340G 0.15 TCGA-D3-A5GR-06 3 155571018 155571018 G A SLC33A1 Missense_Mutation p.L257F 0.11 deleterious(0.02) benign(0.149) TCGA-D3-A5GR-06 3 155571019 155571019 A T SLC33A1 Silent p.T256T 0.11 TCGA-D3-A5GR-06 3 164764748 164764748 T C SI Missense_Mutation p.T590A 0.22 deleterious(0.01) possibly_damaging(0.547) TCGA-D3-A5GR-06 3 170715882 170715882 C T SLC2A2 Missense_Mutation p.G462E 0.22 tolerated(0.08) probably_damaging(0.989) TCGA-D3-A5GR-06 3 182853632 182853632 C T LAMP3 Silent p.Q330Q 0.28 TCGA-D3-A5GR-06 3 183474360 183474360 C T YEATS2 Missense_Mutation p.P479S 0.16 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-D3-A5GR-06 3 195501050 195501050 G A MUC4 Missense_Mutation p.S4357F 0.19 benign(0.262) TCGA-D3-A5GR-06 3 20025232 20025232 C T RAB5A Missense_Mutation p.P189S 0.13 tolerated(0.28) benign(0.001) TCGA-D3-A5GR-06 3 42906800 42906800 C T ACKR2 Missense_Mutation p.T269I 0.14 tolerated(0.16) benign(0.065) TCGA-D3-A5GR-06 3 47041163 47041163 C T NBEAL2 Silent p.S1249S 0.24 TCGA-D3-A5GR-06 3 48719024 48719024 G A NCKIPSD Missense_Mutation p.S263F 0.15 deleterious(0.03) benign(0.306) TCGA-D3-A5GR-06 3 49701918 49701918 G A BSN Missense_Mutation p.D3891N 0.24 possibly_damaging(0.786) TCGA-D3-A5GR-06 3 52356675 52356675 G A DNAH1 Missense_Mutation p.D73N 0.29 benign(0.051) TCGA-D3-A5GR-06 3 53125870 53125870 A G RFT1 3'UTR 0.26 TCGA-D3-A5GR-06 4 1018425 1018425 C T FGFRL1 Missense_Mutation p.R349C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GR-06 4 10446269 10446269 G A ZNF518B Missense_Mutation p.P562S 0.26 tolerated(0.07) benign(0.07) TCGA-D3-A5GR-06 4 122774171 122774171 G A BBS7 Silent p.D263D 0.08 TCGA-D3-A5GR-06 4 134073403 134073403 G T PCDH10 Missense_Mutation p.S703I 0.13 tolerated(0.19) benign(0.073) TCGA-D3-A5GR-06 4 158256974 158256974 C A GRIA2 Missense_Mutation p.A473D 0.40 deleterious(0) probably_damaging(0.975) TCGA-D3-A5GR-06 4 158257858 158257858 C T GRIA2 Silent p.S601S 0.21 TCGA-D3-A5GR-06 4 162463840 162463840 G A FSTL5 Missense_Mutation p.P341S 0.18 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GR-06 4 177113929 177113929 A G SPATA4 Silent p.V179V 0.21 TCGA-D3-A5GR-06 4 183245373 183245373 T C TENM3 Missense_Mutation p.V67A 0.25 deleterious_low_confidence(0.03) benign(0.418) TCGA-D3-A5GR-06 4 184622871 184622871 G A TRAPPC11 Missense_Mutation p.S958N 0.23 tolerated(0.45) probably_damaging(0.966) TCGA-D3-A5GR-06 4 52961065 52961065 C T SPATA18 3'UTR 0.26 TCGA-D3-A5GR-06 4 77660991 77660991 C T SHROOM3 Silent p.S555S 0.18 TCGA-D3-A5GR-06 4 78641677 78641677 G A CNOT6L Missense_Mutation p.P526S 0.15 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GR-06 4 79832865 79832865 G A BMP2K Missense_Mutation p.R1055K 0.18 tolerated_low_confidence(0.24) unknown(0) TCGA-D3-A5GR-06 4 83971041 83971041 C T COPS4 Missense_Mutation p.S105F 0.18 deleterious(0.05) benign(0.257) TCGA-D3-A5GR-06 4 91229847 91229847 G A CCSER1 Missense_Mutation p.E138K 0.11 tolerated(0.33) benign(0.107) TCGA-D3-A5GR-06 5 132238134 132238134 G A AFF4 Missense_Mutation p.S378F 0.25 deleterious(0.01) benign(0.018) TCGA-D3-A5GR-06 5 13751234 13751234 C T DNAH5 Missense_Mutation p.G3722S 0.22 probably_damaging(0.959) TCGA-D3-A5GR-06 5 140183149 140183149 G A PCDHA3 Silent p.Q789Q 0.25 TCGA-D3-A5GR-06 5 140209960 140209960 G A PCDHA6 Missense_Mutation p.E762K 0.21 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-D3-A5GR-06 5 140230102 140230102 G A PCDHA9 Silent p.Q674Q 0.21 TCGA-D3-A5GR-06 5 140389333 140389333 C T PCDHAC1 Silent p.F901F 0.28 TCGA-D3-A5GR-06 5 150578642 150578642 C T CCDC69 Missense_Mutation p.E79K 0.17 tolerated(0.18) possibly_damaging(0.544) TCGA-D3-A5GR-06 5 169108786 169108786 G A DOCK2 Missense_Mutation p.G170E 0.19 tolerated(0.08) probably_damaging(0.932) TCGA-D3-A5GR-06 5 170834760 170834760 C T NPM1 Silent p.F276F 0.27 TCGA-D3-A5GR-06 5 177059489 177059489 C T RP11-1277A3.2 Intron 0.24 TCGA-D3-A5GR-06 5 21975288 21975288 G A CDH12 Silent p.F146F 0.15 TCGA-D3-A5GR-06 5 26881619 26881619 C T CDH9 Missense_Mutation p.E666K 0.18 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GR-06 5 31526644 31526644 G A DROSHA Silent p.V132V 0.24 TCGA-D3-A5GR-06 5 38869150 38869150 G A OSMR Missense_Mutation p.A2T 0.34 deleterious(0) unknown(0) TCGA-D3-A5GR-06 6 117739654 117739654 G A ROS1 Missense_Mutation p.L47F 0.32 deleterious(0.02) benign(0.07) TCGA-D3-A5GR-06 6 29576392 29576392 G A GABBR1 Missense_Mutation p.P660S 0.30 tolerated(0.11) probably_damaging(0.967) TCGA-D3-A5GR-06 6 32014185 32014185 G A TNXB 5'Flank 0.32 TCGA-D3-A5GR-06 6 44121498 44121498 C T TMEM63B Silent p.I676I 0.41 TCGA-D3-A5GR-06 6 54212234 54212234 T C TINAG Missense_Mutation p.L273S 0.44 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GR-06 6 7861751 7861751 G A BMP6 Missense_Mutation p.D309N 0.34 tolerated(0.09) probably_damaging(1) TCGA-D3-A5GR-06 6 96651295 96651295 C T FUT9 Silent p.I88I 0.39 TCGA-D3-A5GR-06 7 103338351 103338351 G A RELN Silent p.L364L 0.59 TCGA-D3-A5GR-06 7 121944261 121944261 G A FEZF1 Silent p.F77F 0.58 TCGA-D3-A5GR-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GR-06 7 141755422 141755422 C T MGAM Missense_Mutation p.P1127S 0.56 deleterious(0.04) benign(0.038) TCGA-D3-A5GR-06 7 141951967 141951967 G A PRSS58 3'UTR 0.52 TCGA-D3-A5GR-06 7 146997273 146997273 C T CNTNAP2 Silent p.F463F 0.18 TCGA-D3-A5GR-06 7 154863064 154863064 G A HTR5A Missense_Mutation p.R152H 0.16 deleterious(0.03) benign(0.02) TCGA-D3-A5GR-06 7 23650850 23650850 T C CCDC126 5'UTR 0.43 TCGA-D3-A5GR-06 7 31864597 31864597 G A PDE1C Silent p.F490F 0.56 TCGA-D3-A5GR-06 7 50468262 50468262 C G IKZF1 Missense_Mutation p.S457R 0.36 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GR-06 7 50468263 50468263 C T IKZF1 Nonsense_Mutation p.Q458* 0.34 TCGA-D3-A5GR-06 7 5352179 5352179 G A TNRC18 Silent p.F2781F 0.64 TCGA-D3-A5GR-06 7 63721235 63721235 T A ZNF679 Missense_Mutation p.L64M 0.12 deleterious(0.01) possibly_damaging(0.844) TCGA-D3-A5GR-06 7 75616450 75616450 G A POR 3'Flank 0.27 TCGA-D3-A5GR-06 7 79846849 79846849 G A GNAI1 3'UTR 0.55 TCGA-D3-A5GR-06 7 82763773 82763773 C T PCLO Silent p.K1031K 0.63 TCGA-D3-A5GR-06 7 98645495 98645495 G A SMURF1 Nonsense_Mutation p.Q348* 0.66 TCGA-D3-A5GR-06 8 124054285 124054285 G A DERL1 Silent p.P26P 0.37 TCGA-D3-A5GR-06 8 25890625 25890625 G A EBF2 Missense_Mutation p.P176L 0.16 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GR-06 8 2820882 2820882 C T CSMD1 Missense_Mutation p.G3106R 0.23 probably_damaging(1) TCGA-D3-A5GR-06 8 39442804 39442804 G A ADAM18 Missense_Mutation p.G22E 0.13 tolerated(0.65) benign(0.011) TCGA-D3-A5GR-06 8 69434053 69434053 C G C8orf34 Missense_Mutation p.S262C 0.23 deleterious(0.04) probably_damaging(0.976) TCGA-D3-A5GR-06 8 8239073 8239073 G A SGK223 Missense_Mutation p.P62L 0.31 probably_damaging(0.941) TCGA-D3-A5GR-06 9 106892049 106892049 T C SMC2 Silent p.L972L 0.12 TCGA-D3-A5GR-06 9 117068875 117068875 C T COL27A1 Missense_Mutation p.L1672F 0.28 unknown(0) TCGA-D3-A5GR-06 9 118969826 118969826 G A PAPPA Missense_Mutation p.E524K 0.16 deleterious(0.02) possibly_damaging(0.621) TCGA-D3-A5GR-06 9 123249598 123249598 G C CDK5RAP2 Missense_Mutation p.P534A 0.12 tolerated(0.11) probably_damaging(0.956) TCGA-D3-A5GR-06 9 125330300 125330300 G A OR1L8 Missense_Mutation p.P153S 0.18 tolerated(1) benign(0.07) TCGA-D3-A5GR-06 9 125562832 125562832 C T OR1K1 Missense_Mutation p.A144V 0.07 deleterious(0.02) benign(0.098) TCGA-D3-A5GR-06 9 130271285 130271285 G A FAM129B Silent p.F429F 0.23 TCGA-D3-A5GR-06 9 135537689 135537689 T C DDX31 Missense_Mutation p.T228A 0.24 tolerated(0.18) benign(0.056) TCGA-D3-A5GR-06 9 137623470 137623470 G T COL5A1 Silent p.G431G 0.15 TCGA-D3-A5GR-06 9 139879253 139879253 G A LCNL1 Silent p.R95R 0.25 TCGA-D3-A5GR-06 9 140083669 140083669 C A SSNA1 Silent p.R68R 0.07 TCGA-D3-A5GR-06 9 141006946 141006946 C T CACNA1B Missense_Mutation p.P1842L 0.09 deleterious(0) possibly_damaging(0.642) TCGA-D3-A5GR-06 9 21971053 21971054 - C CDKN2A Frame_Shift_Ins p.A102Gfs*18 0.20 TCGA-D3-A5GR-06 9 39099988 39099988 C T CNTNAP3 Missense_Mutation p.G972E 0.14 deleterious(0.04) benign(0.162) TCGA-D3-A5GR-06 9 75774259 75774259 A G ANXA1 Missense_Mutation p.T64A 0.13 tolerated(0.35) possibly_damaging(0.454) TCGA-D3-A5GR-06 9 8449747 8449747 C T PTPRD Silent p.R1322R 0.23 TCGA-D3-A5GR-06 9 84606042 84606042 C T SPATA31D1 Silent p.D219D 0.11 TCGA-D3-A5GR-06 9 88844527 88844527 G A C9orf153 5'UTR 0.14 TCGA-D3-A5GR-06 X 102192497 102192497 C T RAB40AL Missense_Mutation p.S84F 0.13 tolerated(0.82) probably_damaging(1) TCGA-D3-A5GR-06 X 102339303 102339303 C T NXF3 Silent p.P106P 0.15 TCGA-D3-A5GR-06 X 105179203 105179203 C T NRK Nonsense_Mutation p.Q1182* 0.35 TCGA-D3-A5GR-06 X 107412742 107412742 C T COL4A6 Missense_Mutation p.G1226E 0.17 probably_damaging(1) TCGA-D3-A5GR-06 X 108641797 108641797 C T GUCY2F Missense_Mutation p.M752I 0.24 deleterious(0.01) benign(0.034) TCGA-D3-A5GR-06 X 114953322 114953322 C T RP1-241P17.4 Silent p.L76L 0.35 TCGA-D3-A5GR-06 X 118217042 118217042 G A KIAA1210 Silent p.F1630F 0.31 TCGA-D3-A5GR-06 X 119739363 119739363 C T MCTS1 Missense_Mutation p.P39L 0.16 deleterious(0.02) benign(0.046) TCGA-D3-A5GR-06 X 127186018 127186018 G A ACTRT1 Silent p.F56F 0.16 TCGA-D3-A5GR-06 X 130412580 130412580 G A IGSF1 Silent p.I637I 0.34 TCGA-D3-A5GR-06 X 133379605 133379605 C T CCDC160 Silent p.L259L 0.17 TCGA-D3-A5GR-06 X 137717808 137717808 G A FGF13 Silent p.F147F 0.31 TCGA-D3-A5GR-06 X 137785178 137785178 C T FGF13 Missense_Mutation p.A134T 0.23 deleterious(0.01) possibly_damaging(0.803) TCGA-D3-A5GR-06 X 1409343 1409343 G A CSF2RA Missense_Mutation p.G196E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GR-06 X 142795504 142795504 C T SPANXN2 Silent p.R58R 0.35 TCGA-D3-A5GR-06 X 153588526 153588526 C T FLNA Missense_Mutation p.G1213S 0.17 tolerated(0.26) benign(0.069) TCGA-D3-A5GR-06 X 153664162 153664162 G A ATP6AP1 Missense_Mutation p.M446I 0.17 deleterious(0.04) possibly_damaging(0.517) TCGA-D3-A5GR-06 X 153697250 153697250 G A PLXNA3 Missense_Mutation p.E1458K 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A5GR-06 X 154157465 154157465 G A F8 Missense_Mutation p.P1534S 0.33 tolerated(0.11) benign(0.176) TCGA-D3-A5GR-06 X 18913297 18913297 A C PHKA2 Missense_Mutation p.S1099A 0.31 tolerated(0.2) benign(0.441) TCGA-D3-A5GR-06 X 23018313 23018313 C T DDX53 Missense_Mutation p.R47C 0.33 tolerated(0.05) possibly_damaging(0.772) TCGA-D3-A5GR-06 X 25031088 25031088 C T ARX Missense_Mutation p.E342K 0.27 deleterious(0.02) benign(0.032) TCGA-D3-A5GR-06 X 30269602 30269602 C A MAGEB1 Missense_Mutation p.T331N 0.09 tolerated(0.25) unknown(0) TCGA-D3-A5GR-06 X 32404489 32404489 G A DMD Missense_Mutation p.P1538S 0.12 probably_damaging(0.954) TCGA-D3-A5GR-06 X 3559975 3559975 G A PRKX Missense_Mutation p.P213S 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GR-06 X 37027082 37027082 C A FAM47C Missense_Mutation p.P200Q 0.16 tolerated(0.09) probably_damaging(0.998) TCGA-D3-A5GR-06 X 37027536 37027536 G A FAM47C Silent p.V351V 0.12 TCGA-D3-A5GR-06 X 37301083 37301083 G A PRRG1 Intron 0.27 TCGA-D3-A5GR-06 X 47269689 47269689 C T ZNF157 Silent p.F29F 0.19 TCGA-D3-A5GR-06 X 50052771 50052771 G A CCNB3 Silent p.K534K 0.30 TCGA-D3-A5GR-06 X 55028767 55028767 G A APEX2 Missense_Mutation p.D109N 0.22 tolerated(0.61) benign(0.008) TCGA-D3-A5GR-06 X 55289750 55289750 G A PAGE3 Missense_Mutation p.P43S 0.19 tolerated(0.09) probably_damaging(0.96) TCGA-D3-A5GR-06 X 57407444 57407444 C T FAAH2 Silent p.L326L 0.34 TCGA-D3-A5GR-06 X 63410656 63410656 G A AMER1 Silent p.S837S 0.31 TCGA-D3-A5GR-06 X 69263353 69263353 G A AWAT2 Silent p.F149F 0.12 TCGA-D3-A5GR-06 X 77258649 77258649 G A ATP7A Missense_Mutation p.M541I 0.27 tolerated(0.07) benign(0.001) TCGA-D3-A5GR-06 X 79936966 79936966 G A BRWD3 Silent p.L1510L 0.24 TCGA-D3-A5GR-06 X 83129493 83129493 G A CYLC1 Missense_Mutation p.E593K 0.19 tolerated(1) benign(0.093) TCGA-D3-A5GS-06 10 107012576 107012576 C T SORCS3 Missense_Mutation p.P1050L 0.64 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GS-06 10 124043377 124043377 C T BTBD16 Missense_Mutation p.S60L 0.83 deleterious(0.01) possibly_damaging(0.49) TCGA-D3-A5GS-06 10 125801959 125801959 G A CHST15 Silent p.I297I 0.61 TCGA-D3-A5GS-06 10 13337534 13337534 G A PHYH Silent p.I69I 0.36 TCGA-D3-A5GS-06 10 17165618 17165618 G A CUBN Missense_Mutation p.S153F 0.42 deleterious(0) probably_damaging(0.963) TCGA-D3-A5GS-06 10 20290791 20290791 G A PLXDC2 Missense_Mutation p.R67K 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GS-06 10 21414910 21414910 G A C10orf113 Nonsense_Mutation p.Q104* 0.40 TCGA-D3-A5GS-06 10 24784105 24784105 G A KIAA1217 Missense_Mutation p.R605K 0.38 tolerated(1) benign(0.003) TCGA-D3-A5GS-06 10 25312542 25312542 C T THNSL1 Silent p.S130S 0.29 TCGA-D3-A5GS-06 10 26851355 26851355 G A APBB1IP Silent p.S490S 0.41 TCGA-D3-A5GS-06 10 27702712 27702712 G A PTCHD3 Silent p.F156F 0.41 TCGA-D3-A5GS-06 10 28270496 28270496 C T ARMC4 Missense_Mutation p.E279K 0.45 tolerated(0.64) benign(0.006) TCGA-D3-A5GS-06 10 28409304 28409304 G A MPP7 Missense_Mutation p.L236F 0.37 tolerated(0.06) probably_damaging(0.973) TCGA-D3-A5GS-06 10 28420578 28420578 C T MPP7 Missense_Mutation p.D120N 0.39 tolerated(0.12) benign(0.128) TCGA-D3-A5GS-06 10 30317117 30317117 C T KIAA1462 Missense_Mutation p.E654K 0.31 tolerated(0.3) possibly_damaging(0.487) TCGA-D3-A5GS-06 10 30318498 30318498 C T KIAA1462 Silent p.R193R 0.46 TCGA-D3-A5GS-06 10 37433984 37433984 G A ANKRD30A Silent p.R429R 0.28 TCGA-D3-A5GS-06 10 48390684 48390684 G A RBP3 Missense_Mutation p.S65L 0.56 deleterious(0.01) possibly_damaging(0.834) TCGA-D3-A5GS-06 10 48414282 48414282 C T GDF2 Missense_Mutation p.D196N 0.62 tolerated(0.28) benign(0.015) TCGA-D3-A5GS-06 10 50530734 50530734 C T C10orf71 Silent p.F48F 0.67 TCGA-D3-A5GS-06 10 67748490 67748490 C T CTNNA3 Missense_Mutation p.G742E 0.72 deleterious(0.02) unknown(0) TCGA-D3-A5GS-06 10 67748491 67748491 C T CTNNA3 Missense_Mutation p.G742R 0.72 deleterious(0) unknown(0) TCGA-D3-A5GS-06 10 72358265 72358265 G A PRF1 Silent p.T404T 0.70 TCGA-D3-A5GS-06 10 85982254 85982254 G A LRIT2 Missense_Mutation p.P359S 0.57 tolerated(0.48) benign(0.003) TCGA-D3-A5GS-06 10 96748784 96748784 G A CYP2C9 Silent p.%3D 0.59 TCGA-D3-A5GS-06 11 123894029 123894029 C T OR10G9 Missense_Mutation p.H104Y 0.35 deleterious(0.01) benign(0.033) TCGA-D3-A5GS-06 11 123909235 123909235 C T OR10G7 Silent p.Q158Q 0.56 TCGA-D3-A5GS-06 11 123909399 123909399 G A OR10G7 Missense_Mutation p.H104Y 0.17 deleterious(0.01) benign(0.033) TCGA-D3-A5GS-06 11 124180576 124180576 G A OR8D1 Silent p.L29L 0.64 TCGA-D3-A5GS-06 11 19251164 19251164 G A E2F8 Missense_Mutation p.T577I 0.56 tolerated(0.2) benign(0.003) TCGA-D3-A5GS-06 11 193781 193781 C T SCGB1C1 Missense_Mutation p.P42L 0.14 tolerated(0.35) benign(0.011) TCGA-D3-A5GS-06 11 20177966 20177966 C T DBX1 Missense_Mutation p.E315K 0.45 deleterious(0.02) possibly_damaging(0.509) TCGA-D3-A5GS-06 11 20869142 20869142 G A NELL1 Missense_Mutation p.E117K 0.39 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GS-06 11 2356953 2356953 C T CD81-AS1 Intron 0.50 TCGA-D3-A5GS-06 11 25071642 25071642 G A LUZP2 Missense_Mutation p.G275E 0.29 tolerated(1) benign(0.001) TCGA-D3-A5GS-06 11 30255155 30255155 G A FSHB Silent p.Q66Q 0.25 TCGA-D3-A5GS-06 11 4703959 4703959 G A OR51E2 5'UTR 0.23 TCGA-D3-A5GS-06 11 4903316 4903316 T C OR51T1 Missense_Mutation p.Y90H 0.24 deleterious(0) probably_damaging(0.961) TCGA-D3-A5GS-06 11 4967581 4967581 G A OR51A4 Silent p.I250I 0.11 TCGA-D3-A5GS-06 11 4976194 4976194 G A OR51A2 Silent p.I250I 0.18 TCGA-D3-A5GS-06 11 5264349 5264349 G A HBG1 3'Flank 0.57 TCGA-D3-A5GS-06 11 55595452 55595452 G A OR5L2 Missense_Mutation p.G253E 0.62 deleterious(0) possibly_damaging(0.908) TCGA-D3-A5GS-06 11 56511234 56511234 C T OR9G4 Silent p.V18V 0.66 TCGA-D3-A5GS-06 11 5798997 5798997 A G OR52N5 Missense_Mutation p.Y290H 0.31 deleterious(0) benign(0.35) TCGA-D3-A5GS-06 11 60785470 60785470 C A CD6 Missense_Mutation p.Q608K 0.45 deleterious(0.04) benign(0.215) TCGA-D3-A5GS-06 11 62562413 62562413 T A NXF1 Missense_Mutation p.N524I 0.62 tolerated(0.06) benign(0.079) TCGA-D3-A5GS-06 11 64508458 64508458 C T RASGRP2 Silent p.G111G 0.70 TCGA-D3-A5GS-06 11 64800005 64800005 C T SNX15 Missense_Mutation p.P80S 0.70 deleterious(0.02) probably_damaging(0.931) TCGA-D3-A5GS-06 11 64854056 64854056 C T ZFPL1 Silent p.A128A 0.59 TCGA-D3-A5GS-06 11 66084330 66084330 C T CD248 Missense_Mutation p.D57N 0.50 tolerated(1) benign(0.018) TCGA-D3-A5GS-06 11 66204871 66204871 G A MRPL11 Missense_Mutation p.S88F 0.77 deleterious(0) probably_damaging(0.978) TCGA-D3-A5GS-06 11 68548117 68548117 G A CPT1A Silent p.H483H 0.50 TCGA-D3-A5GS-06 11 6943159 6943159 G A OR2D3 Silent p.R309R 0.46 TCGA-D3-A5GS-06 11 7982493 7982493 G A NLRP10 Silent p.L222L 0.27 TCGA-D3-A5GS-06 12 104105274 104105274 G A STAB2 Silent p.G1438G 0.48 TCGA-D3-A5GS-06 12 110206311 110206311 C T FAM222A Missense_Mutation p.P193S 0.41 tolerated(0.19) probably_damaging(0.994) TCGA-D3-A5GS-06 12 112884163 112884163 C T PTPN11 Missense_Mutation p.P33L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A5GS-06 12 113307767 113307767 G A RPH3A Missense_Mutation p.R240Q 0.54 tolerated(0.2) probably_damaging(0.997) TCGA-D3-A5GS-06 12 113544915 113544915 C T RASAL1 Silent p.V549V 0.35 TCGA-D3-A5GS-06 12 121019202 121019202 G A POP5 5'Flank 0.24 TCGA-D3-A5GS-06 12 121426771 121426771 G A HNF1A Missense_Mutation p.M154I 0.28 deleterious(0.02) possibly_damaging(0.65) TCGA-D3-A5GS-06 12 122218724 122218724 G A TMEM120B 3'UTR 0.40 TCGA-D3-A5GS-06 12 122729244 122729244 G A VPS33A Missense_Mutation p.P281S 0.25 tolerated(0.7) benign(0.012) TCGA-D3-A5GS-06 12 122729245 122729245 G A VPS33A Silent p.L280L 0.24 TCGA-D3-A5GS-06 12 129431887 129431887 G C GLT1D1 Missense_Mutation p.A142P 0.14 tolerated(0.41) benign(0) TCGA-D3-A5GS-06 12 18891447 18891447 G A CAPZA3 Missense_Mutation p.R82Q 0.45 deleterious(0.03) probably_damaging(0.968) TCGA-D3-A5GS-06 12 21422666 21422666 C T SLCO1A2 Missense_Mutation p.G610E 0.45 deleterious(0.02) possibly_damaging(0.774) TCGA-D3-A5GS-06 12 21997802 21997802 G A ABCC9 Silent p.F1048F 0.21 TCGA-D3-A5GS-06 12 3702286 3702286 G A PRMT8 Missense_Mutation p.D375N 0.52 tolerated(0.11) benign(0.005) TCGA-D3-A5GS-06 12 43771275 43771275 G A ADAMTS20 Missense_Mutation p.R1630W 0.55 tolerated(0.36) benign(0.003) TCGA-D3-A5GS-06 12 47630095 47630095 C T PCED1B Nonsense_Mutation p.R417* 0.33 TCGA-D3-A5GS-06 12 49231348 49231348 G A DDX23 Missense_Mutation p.R238W 0.36 tolerated(0.11) benign(0.004) TCGA-D3-A5GS-06 12 49231349 49231349 G A DDX23 Silent p.I237I 0.36 TCGA-D3-A5GS-06 12 52309989 52309989 G A ACVRL1 Nonsense_Mutation p.W406* 0.46 TCGA-D3-A5GS-06 12 55248901 55248901 G A MUCL1 Silent p.Q20Q 0.37 TCGA-D3-A5GS-06 12 55252110 55252110 G A MUCL1 3'UTR 0.41 TCGA-D3-A5GS-06 12 55886278 55886278 G A OR6C68 Silent p.G39G 0.51 TCGA-D3-A5GS-06 12 57146014 57146014 G A PRIM1 Silent p.Y23Y 0.47 TCGA-D3-A5GS-06 12 6125994 6125994 G A VWF Missense_Mutation p.S1699F 0.16 deleterious(0) probably_damaging(0.951) TCGA-D3-A5GS-06 12 70048794 70048794 C T BEST3 Missense_Mutation p.A634T 0.37 tolerated_low_confidence(0.14) benign(0.015) TCGA-D3-A5GS-06 12 7459301 7459301 C T ACSM4 Missense_Mutation p.P125L 0.58 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GS-06 12 7519914 7519914 C T CD163L1 Silent p.R1399R 0.15 TCGA-D3-A5GS-06 12 86199464 86199464 G A RASSF9 Silent p.P108P 0.35 TCGA-D3-A5GS-06 13 111329419 111329419 G A CARS2 Silent p.F229F 0.35 TCGA-D3-A5GS-06 13 113333874 113333874 T A C13orf35 Missense_Mutation p.W61R 0.37 deleterious_low_confidence(0.05) possibly_damaging(0.781) TCGA-D3-A5GS-06 13 113897351 113897351 A C CUL4A Missense_Mutation p.K369Q 0.33 deleterious(0) possibly_damaging(0.874) TCGA-D3-A5GS-06 13 23904401 23904401 G A SACS Silent p.Y4538Y 0.40 TCGA-D3-A5GS-06 13 25058814 25058814 C T PARP4 Silent p.G475G 0.11 TCGA-D3-A5GS-06 13 25356008 25356008 G A RNF17 Silent p.T179T 0.43 TCGA-D3-A5GS-06 13 29608061 29608061 C T MTUS2 Missense_Mutation p.P759S 0.38 tolerated(0.14) benign(0.009) TCGA-D3-A5GS-06 13 33628356 33628356 G A KL Silent p.K424K 0.38 TCGA-D3-A5GS-06 13 50134104 50134104 C - RCBTB1 Frame_Shift_Del p.E132Kfs*2 0.27 TCGA-D3-A5GS-06 13 50280404 50280404 C T KPNA3 Silent p.K379K 0.30 TCGA-D3-A5GS-06 13 72131162 72131162 C T DACH1 Missense_Mutation p.E524K 0.35 benign(0.045) TCGA-D3-A5GS-06 13 99947309 99947309 C T GPR183 3'UTR 0.41 TCGA-D3-A5GS-06 14 100741052 100741052 T - YY1 Frame_Shift_Del p.E289Kfs*8 0.23 TCGA-D3-A5GS-06 14 105239613 105239613 C T AKT1 Missense_Mutation p.G311D 0.55 deleterious(0) probably_damaging(0.975) TCGA-D3-A5GS-06 14 106725444 106725444 G A IGHV3-23 Silent p.S36S 0.27 TCGA-D3-A5GS-06 14 106829777 106829777 C T IGHV4-34 Nonsense_Mutation p.W62* 0.36 TCGA-D3-A5GS-06 14 106967482 106967482 C T IGHV1-46 Translation_Start_Site p.M1? 0.33 deleterious(0.02) benign(0.308) TCGA-D3-A5GS-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.14 TCGA-D3-A5GS-06 14 22133574 22133574 C T OR4E2 Missense_Mutation p.S93F 0.83 deleterious(0.01) benign(0.049) TCGA-D3-A5GS-06 14 23855197 23855197 C T MYH6 Silent p.R1701R 0.44 TCGA-D3-A5GS-06 14 23855198 23855198 C T MYH6 Missense_Mutation p.R1701Q 0.45 deleterious(0) possibly_damaging(0.905) TCGA-D3-A5GS-06 14 26917108 26917108 C T NOVA1 3'UTR 0.29 TCGA-D3-A5GS-06 14 35568517 35568517 G A PPP2R3C Missense_Mutation p.S216F 0.41 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A5GS-06 14 39722333 39722333 C T MIA2 Silent p.F615F 0.41 TCGA-D3-A5GS-06 14 63175164 63175164 G A KCNH5 Missense_Mutation p.R677C 0.52 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GS-06 14 70517804 70517804 G A SLC8A3 Silent p.I684I 0.38 TCGA-D3-A5GS-06 14 70926274 70926274 G A ADAM21 Silent p.L686L 0.42 TCGA-D3-A5GS-06 14 72090797 72090797 C A SIPA1L1 Missense_Mutation p.D554E 0.32 deleterious(0.01) benign(0.166) TCGA-D3-A5GS-06 14 77294702 77294702 C T C14orf166B Missense_Mutation p.P53S 0.12 tolerated(0.67) benign(0.006) TCGA-D3-A5GS-06 14 79454436 79454436 A T NRXN3 Missense_Mutation p.T699S 0.29 tolerated(0.36) benign(0.007) TCGA-D3-A5GS-06 14 94187818 94187818 C T PRIMA1 Missense_Mutation p.G145E 0.23 tolerated(0.1) benign(0.052) TCGA-D3-A5GS-06 14 94528939 94528939 G A DDX24 Silent p.I249I 0.34 TCGA-D3-A5GS-06 14 96130079 96130079 C T TCL6 RNA 0.42 TCGA-D3-A5GS-06 15 101562661 101562661 C T LRRK1 Silent p.I642I 0.38 TCGA-D3-A5GS-06 15 22332412 22332412 G A RP11-69H14.6 RNA 0.25 TCGA-D3-A5GS-06 15 24921531 24921531 G A NPAP1 Missense_Mutation p.D173N 0.31 tolerated(0.27) benign(0.259) TCGA-D3-A5GS-06 15 30011032 30011032 G A TJP1 Missense_Mutation p.P1105L 0.43 tolerated_low_confidence(0.05) benign(0.06) TCGA-D3-A5GS-06 15 39874594 39874594 C T THBS1 Missense_Mutation p.L90F 0.42 tolerated(0.4) benign(0.194) TCGA-D3-A5GS-06 15 59911717 59911717 A T GCNT3 Missense_Mutation p.Y427F 0.36 tolerated(0.12) benign(0.056) TCGA-D3-A5GS-06 15 73635795 73635795 C T HCN4 Silent p.T380T 0.29 TCGA-D3-A5GS-06 15 74964046 74964046 G A EDC3 Silent p.D78D 0.29 TCGA-D3-A5GS-06 15 83561585 83561585 G A HOMER2 Missense_Mutation p.P5L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 15 85383528 85383528 C T ALPK3 Missense_Mutation p.R542C 0.48 tolerated(0.23) benign(0.001) TCGA-D3-A5GS-06 15 88472452 88472452 G A NTRK3 Silent p.S701S 0.39 TCGA-D3-A5GS-06 16 10995381 10995381 G A CIITA Silent p.E149E 0.12 TCGA-D3-A5GS-06 16 16281062 16281062 C T ABCC6 Missense_Mutation p.V596M 0.12 deleterious(0) probably_damaging(0.986) TCGA-D3-A5GS-06 16 19455503 19455503 G A TMC5 Missense_Mutation p.E297K 0.31 deleterious(0.03) benign(0.15) TCGA-D3-A5GS-06 16 20793095 20793095 G A ACSM3 Silent p.Q335Q 0.33 TCGA-D3-A5GS-06 16 29818754 29818754 G A MAZ Silent p.K216K 0.43 TCGA-D3-A5GS-06 16 30794743 30794743 G A ZNF629 Silent p.N302N 0.42 TCGA-D3-A5GS-06 16 31418929 31418929 G A ITGAD Silent p.L266L 0.44 TCGA-D3-A5GS-06 16 3363113 3363113 C T ZNF75A Missense_Mutation p.P13L 0.33 tolerated(0.07) benign(0.046) TCGA-D3-A5GS-06 16 57017693 57017693 G A CETP 3'UTR 0.75 TCGA-D3-A5GS-06 16 58756091 58756091 G A GOT2 Missense_Mutation p.A113V 0.80 deleterious(0.04) benign(0.107) TCGA-D3-A5GS-06 16 68156766 68156766 C T NFATC3 Missense_Mutation p.P327L 0.79 tolerated(0.12) benign(0.019) TCGA-D3-A5GS-06 16 68405281 68405281 C T SMPD3 Silent p.R268R 0.84 TCGA-D3-A5GS-06 16 70908339 70908339 C T HYDIN Missense_Mutation p.G3606E 0.27 probably_damaging(0.988) TCGA-D3-A5GS-06 16 71604239 71604239 C T TAT Missense_Mutation p.G325E 0.84 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GS-06 16 71604240 71604240 C T TAT Missense_Mutation p.G325R 0.86 tolerated(0.06) possibly_damaging(0.744) TCGA-D3-A5GS-06 16 89777094 89777094 G A VPS9D1 Silent p.F386F 0.69 TCGA-D3-A5GS-06 16 9892322 9892322 C T GRIN2A Splice_Site p.X723_splice 0.39 TCGA-D3-A5GS-06 17 10304034 10304034 C T MYH8 Silent p.E1136E 0.36 TCGA-D3-A5GS-06 17 10304487 10304487 C T MYH8 Missense_Mutation p.E1044K 0.42 deleterious(0) possibly_damaging(0.844) TCGA-D3-A5GS-06 17 10323473 10323473 C T MYH8 Silent p.K24K 0.36 TCGA-D3-A5GS-06 17 10404684 10404684 T A MYH1 Missense_Mutation p.T1161S 0.37 tolerated(0.24) benign(0.26) TCGA-D3-A5GS-06 17 10550725 10550725 G A MYH3 Missense_Mutation p.H252Y 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A5GS-06 17 11523033 11523033 G A DNAH9 Missense_Mutation p.D429N 0.38 benign(0.034) TCGA-D3-A5GS-06 17 18148563 18148563 G A FLII Silent p.S1233S 0.42 TCGA-D3-A5GS-06 17 19559790 19559790 G A ALDH3A2 Missense_Mutation p.E195K 0.43 tolerated(0.23) benign(0.055) TCGA-D3-A5GS-06 17 27008287 27008287 C T SUPT6H Nonsense_Mutation p.Q455* 0.39 TCGA-D3-A5GS-06 17 29272071 29272071 G A ADAP2 Silent p.K219K 0.24 TCGA-D3-A5GS-06 17 29622726 29622726 G T OMG Missense_Mutation p.D208E 0.36 tolerated(0.48) benign(0.012) TCGA-D3-A5GS-06 17 34235463 34235463 G A AC015849.16 RNA 0.33 TCGA-D3-A5GS-06 17 35468500 35468500 C T ACACA Silent p.V2177V 0.38 TCGA-D3-A5GS-06 17 38251936 38251936 G A NR1D1 Missense_Mutation p.P337S 0.37 tolerated(0.56) benign(0.01) TCGA-D3-A5GS-06 17 38938526 38938526 C T KRT27 Missense_Mutation p.G74R 0.38 deleterious(0.05) benign(0.005) TCGA-D3-A5GS-06 17 39032599 39032599 C T KRT20 3'UTR 0.34 TCGA-D3-A5GS-06 17 39240825 39240825 C T KRTAP4-7 Missense_Mutation p.P123S 0.31 tolerated(0.24) unknown(0) TCGA-D3-A5GS-06 17 39768428 39768428 G A KRT16 Silent p.I171I 0.33 TCGA-D3-A5GS-06 17 39913718 39913718 G A JUP Silent p.S665S 0.35 TCGA-D3-A5GS-06 17 40475298 40475298 G A STAT3 Silent p.I576I 0.39 TCGA-D3-A5GS-06 17 40985588 40985588 C T PSME3 5'UTR 0.26 TCGA-D3-A5GS-06 17 40985589 40985589 C T PSME3 5'UTR 0.26 TCGA-D3-A5GS-06 17 41063444 41063444 G A G6PC 3'UTR 0.35 TCGA-D3-A5GS-06 17 45890658 45890658 G A OSBPL7 Nonsense_Mutation p.R571* 0.26 TCGA-D3-A5GS-06 17 48683417 48683417 G A CACNA1G Intron 0.26 TCGA-D3-A5GS-06 17 48734092 48734092 C T ABCC3 Silent p.S84S 0.22 TCGA-D3-A5GS-06 17 5042399 5042399 G A USP6 Intron 0.33 TCGA-D3-A5GS-06 17 5085353 5085353 C T ZNF594 Silent p.E733E 0.41 TCGA-D3-A5GS-06 17 58134512 58134512 G A HEATR6 Missense_Mutation p.S659F 0.21 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GS-06 17 66902209 66902209 C T ABCA8 Missense_Mutation p.G752R 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GS-06 17 71387649 71387649 G A SDK2 Silent p.F1309F 0.27 TCGA-D3-A5GS-06 17 72287263 72287263 G A DNAI2 Missense_Mutation p.G239R 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 17 72436247 72436247 C T GPRC5C Missense_Mutation p.P156L 0.64 tolerated(0.27) benign(0.142) TCGA-D3-A5GS-06 17 7245758 7245758 C G ACAP1 Missense_Mutation p.H103Q 0.37 deleterious(0.05) benign(0.001) TCGA-D3-A5GS-06 17 72470795 72470795 G A CD300A Silent p.Q168Q 0.53 TCGA-D3-A5GS-06 17 76972087 76972087 C T LGALS3BP Silent p.E68E 0.18 TCGA-D3-A5GS-06 17 78921039 78921039 G A RPTOR Nonsense_Mutation p.W1051* 0.20 TCGA-D3-A5GS-06 18 13885332 13885332 G A MC2R Silent p.F62F 0.31 TCGA-D3-A5GS-06 18 56400684 56400684 C T MALT1 Silent p.V426V 0.37 TCGA-D3-A5GS-06 18 6985390 6985390 C T LAMA1 Missense_Mutation p.D1836N 0.41 tolerated(0.44) benign(0) TCGA-D3-A5GS-06 18 7015735 7015735 C T LAMA1 Missense_Mutation p.E1038K 0.33 tolerated(0.86) benign(0.081) TCGA-D3-A5GS-06 18 7015736 7015736 C T LAMA1 Silent p.A1037A 0.32 TCGA-D3-A5GS-06 18 70205504 70205504 C T CBLN2 Silent p.R194R 0.37 TCGA-D3-A5GS-06 18 74639936 74639936 G A ZNF236 Missense_Mutation p.G1488S 0.38 tolerated(1) benign(0.001) TCGA-D3-A5GS-06 19 13470428 13470428 G A CACNA1A Missense_Mutation p.L324F 0.53 probably_damaging(0.934) TCGA-D3-A5GS-06 19 14682741 14682741 G A NDUFB7 Silent p.T24T 0.34 TCGA-D3-A5GS-06 19 17186325 17186325 G A HAUS8 5'UTR 0.32 TCGA-D3-A5GS-06 19 18313430 18313430 G A RAB3A Missense_Mutation p.R41C 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 19 18333019 18333019 G A PDE4C Silent p.S119S 0.33 TCGA-D3-A5GS-06 19 20727586 20727586 G A ZNF737 Missense_Mutation p.H475Y 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A5GS-06 19 21606171 21606171 C T ZNF493 Missense_Mutation p.S237F 0.26 deleterious(0.03) possibly_damaging(0.906) TCGA-D3-A5GS-06 19 22941865 22941865 C T ZNF99 Silent p.K282K 0.27 TCGA-D3-A5GS-06 19 36256067 36256067 C T C19orf55 Silent p.P253P 0.43 TCGA-D3-A5GS-06 19 36304179 36304179 G A PRODH2 Missense_Mutation p.S2L 0.60 benign(0) TCGA-D3-A5GS-06 19 36333048 36333048 G A NPHS1 Missense_Mutation p.P881S 0.46 tolerated(0.59) benign(0.063) TCGA-D3-A5GS-06 19 36430613 36430613 C T LRFN3 Missense_Mutation p.R96C 0.50 deleterious(0.02) possibly_damaging(0.676) TCGA-D3-A5GS-06 19 38951132 38951132 G A RYR1 Silent p.K826K 0.45 TCGA-D3-A5GS-06 19 39002899 39002899 C T RYR1 Missense_Mutation p.S3083L 0.42 benign(0.007) TCGA-D3-A5GS-06 19 41622455 41622455 G A CYP2F1 Silent p.V89V 0.41 TCGA-D3-A5GS-06 19 43262392 43262392 G A PSG8 Silent p.N157N 0.42 TCGA-D3-A5GS-06 19 43371171 43371171 C T PSG1 3'Flank 0.50 TCGA-D3-A5GS-06 19 4510978 4510978 G A PLIN4 Silent p.F984F 0.41 TCGA-D3-A5GS-06 19 45315788 45315788 G A BCAM Missense_Mutation p.E163K 0.27 tolerated(0.06) possibly_damaging(0.617) TCGA-D3-A5GS-06 19 46627285 46627285 C T IGFL3 Missense_Mutation p.G70S 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A5GS-06 19 47548652 47548652 G A NPAS1 Missense_Mutation p.D506N 0.38 tolerated(0.14) benign(0.203) TCGA-D3-A5GS-06 19 49385371 49385371 C T TULP2 Silent p.E455E 0.46 TCGA-D3-A5GS-06 19 50398439 50398439 T C IL4I1 Splice_Site p.X107_splice 0.40 TCGA-D3-A5GS-06 19 51378017 51378017 G A KLK2 Nonsense_Mutation p.W29* 0.31 TCGA-D3-A5GS-06 19 51532448 51532448 C T KLK12 Missense_Mutation p.G243E 0.33 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-D3-A5GS-06 19 53015470 53015470 C T ZNF578 3'Flank 0.37 TCGA-D3-A5GS-06 19 54251952 54251952 C T MIR521-1 RNA 0.32 TCGA-D3-A5GS-06 19 54299235 54299235 G A NLRP12 Silent p.F992F 0.33 TCGA-D3-A5GS-06 19 54385788 54385788 G A PRKCG Missense_Mutation p.G14R 0.38 tolerated(0.09) benign(0.288) TCGA-D3-A5GS-06 19 54782776 54782776 G A LILRB2 Silent p.T282T 0.31 TCGA-D3-A5GS-06 19 55333073 55333073 G A KIR3DL1 Missense_Mutation p.G237R 0.37 deleterious(0) possibly_damaging(0.898) TCGA-D3-A5GS-06 19 55481532 55481532 C T NLRP2 Missense_Mutation p.A50V 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 19 55501987 55501987 G A NLRP2 Silent p.V885V 0.39 TCGA-D3-A5GS-06 19 56156553 56156553 G A ZNF581 3'UTR 0.35 TCGA-D3-A5GS-06 19 56243954 56243954 G A NLRP9 Missense_Mutation p.L415F 0.50 tolerated(0.08) benign(0.172) TCGA-D3-A5GS-06 19 57889682 57889682 C T ZNF547 3'UTR 0.38 TCGA-D3-A5GS-06 19 58199677 58199677 T A ZNF551 3'UTR 0.36 TCGA-D3-A5GS-06 19 6679478 6679478 C T C3 Missense_Mutation p.E1496K 0.46 tolerated(0.31) benign(0.004) TCGA-D3-A5GS-06 19 6690654 6690654 C T C3 Missense_Mutation p.E1159K 0.31 tolerated(0.71) benign(0.004) TCGA-D3-A5GS-06 19 6928321 6928321 G A EMR1 Intron 0.46 TCGA-D3-A5GS-06 19 7711206 7711206 C T STXBP2 Silent p.T476T 0.21 TCGA-D3-A5GS-06 19 9064856 9064856 C T MUC16 Silent p.R7530R 0.31 TCGA-D3-A5GS-06 19 9088132 9088132 G A MUC16 Missense_Mutation p.S1228L 0.42 unknown(0) TCGA-D3-A5GS-06 19 9089213 9089213 C T MUC16 Missense_Mutation p.E868K 0.33 unknown(0) TCGA-D3-A5GS-06 19 9297090 9297090 C T OR7D2 Silent p.L211L 0.42 TCGA-D3-A5GS-06 1 110152690 110152690 C G GNAT2 Missense_Mutation p.G92A 0.23 tolerated(0.17) benign(0.02) TCGA-D3-A5GS-06 1 113153507 113153507 G A ST7L Missense_Mutation p.P136L 0.66 tolerated(0.48) benign(0.008) TCGA-D3-A5GS-06 1 118582005 118582005 C T SPAG17 Missense_Mutation p.D1077N 0.69 tolerated(0.18) probably_damaging(0.999) TCGA-D3-A5GS-06 1 118624180 118624180 C T SPAG17 Silent p.G616G 0.45 TCGA-D3-A5GS-06 1 11918291 11918291 G A NPPB Missense_Mutation p.S123F 0.71 tolerated(0.75) benign(0.034) TCGA-D3-A5GS-06 1 120050152 120050152 G A HSD3B1 Missense_Mutation p.R18K 0.47 tolerated(0.11) benign(0.17) TCGA-D3-A5GS-06 1 12267128 12267128 G A TNFRSF1B 3'UTR 0.65 TCGA-D3-A5GS-06 1 142713063 142713063 C T RP11-417J8.6 RNA 0.18 TCGA-D3-A5GS-06 1 150298211 150298211 C T PRPF3 Missense_Mutation p.H50Y 0.41 deleterious(0.02) benign(0.029) TCGA-D3-A5GS-06 1 151338051 151338051 G A SELENBP1 Silent p.R344R 0.50 TCGA-D3-A5GS-06 1 152285704 152285704 C T FLG Missense_Mutation p.G553E 0.49 possibly_damaging(0.573) TCGA-D3-A5GS-06 1 152749062 152749062 G A LCE1F Missense_Mutation p.G72E 0.33 tolerated_low_confidence(0.06) unknown(0) TCGA-D3-A5GS-06 1 154229841 154229841 C T UBAP2L Silent p.L791L 0.33 TCGA-D3-A5GS-06 1 156351931 156351931 C T RHBG Silent p.L351L 0.46 TCGA-D3-A5GS-06 1 158325692 158325692 G A CD1E Missense_Mutation p.G234E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 1 158326606 158326606 C T CD1E Nonsense_Mutation p.Q363* 0.37 TCGA-D3-A5GS-06 1 158390303 158390303 C T OR10K2 Missense_Mutation p.M118I 0.28 deleterious(0.01) benign(0.175) TCGA-D3-A5GS-06 1 158435861 158435861 C T OR10K1 Silent p.S170S 0.29 TCGA-D3-A5GS-06 1 158724660 158724660 C T OR6K6 Missense_Mutation p.P19S 0.30 tolerated_low_confidence(0.75) benign(0.002) TCGA-D3-A5GS-06 1 159802876 159802876 G A SLAMF8 Missense_Mutation p.G193E 0.29 tolerated(0.47) benign(0.02) TCGA-D3-A5GS-06 1 160303462 160303462 G A COPA Missense_Mutation p.P106L 0.57 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GS-06 1 160769832 160769832 T C LY9 Silent p.F138F 0.42 TCGA-D3-A5GS-06 1 161476237 161476237 C T FCGR2A Nonsense_Mutation p.Q74* 0.34 TCGA-D3-A5GS-06 1 167095026 167095026 A G DUSP27 Missense_Mutation p.K220E 0.33 deleterious(0.02) possibly_damaging(0.79) TCGA-D3-A5GS-06 1 169512053 169512053 C T F5 Missense_Mutation p.E759K 0.31 deleterious(0) probably_damaging(0.949) TCGA-D3-A5GS-06 1 171289012 171289012 C T FMO4 Silent p.S16S 0.52 TCGA-D3-A5GS-06 1 17395640 17395640 C T PADI2 Missense_Mutation p.D633N 0.61 tolerated(0.2) probably_damaging(0.939) TCGA-D3-A5GS-06 1 176993856 176993856 C T ASTN1 Missense_Mutation p.R378Q 0.33 tolerated(0.08) probably_damaging(0.994) TCGA-D3-A5GS-06 1 180904337 180904337 C T KIAA1614 Missense_Mutation p.S431F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 1 181724526 181724526 G A CACNA1E Missense_Mutation p.E1328K 0.43 deleterious(0.01) benign(0.193) TCGA-D3-A5GS-06 1 196714955 196714955 G A CFH Missense_Mutation p.G1107R 0.34 deleterious(0.03) possibly_damaging(0.85) TCGA-D3-A5GS-06 1 196918654 196918654 C T CFHR2 Missense_Mutation p.S43F 0.57 tolerated(1) benign(0.016) TCGA-D3-A5GS-06 1 203150401 203150401 G A CHI3L1 Silent p.F200F 0.28 TCGA-D3-A5GS-06 1 205138507 205138507 G A DSTYK Missense_Mutation p.L370F 0.25 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GS-06 1 211486923 211486923 C T RCOR3 Missense_Mutation p.P492L 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 1 212273882 212273882 C T DTL Missense_Mutation p.P517L 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A5GS-06 1 217947835 217947835 C T SPATA17 Missense_Mutation p.P227S 0.25 tolerated(0.19) benign(0.031) TCGA-D3-A5GS-06 1 223177609 223177609 C T DISP1 Missense_Mutation p.S957L 0.40 tolerated(0.38) benign(0.426) TCGA-D3-A5GS-06 1 233122099 233122099 G A PCNXL2 Silent p.S1993S 0.60 TCGA-D3-A5GS-06 1 237870469 237870469 C T RYR2 Silent p.A3267A 0.47 TCGA-D3-A5GS-06 1 247592893 247592893 G A NLRP3 Silent p.V721V 0.43 TCGA-D3-A5GS-06 1 248224274 248224274 G A OR2L3 Silent p.G97G 0.51 TCGA-D3-A5GS-06 1 248436940 248436940 G A OR2T33 Silent p.F59F 0.25 TCGA-D3-A5GS-06 1 248458015 248458015 C T OR2T12 Missense_Mutation p.S289N 0.28 deleterious(0) probably_damaging(0.91) TCGA-D3-A5GS-06 1 248652006 248652006 C T OR2T5 Silent p.F39F 0.24 TCGA-D3-A5GS-06 1 43392593 43392593 G A SLC2A1 3'UTR 0.67 TCGA-D3-A5GS-06 1 52941118 52941118 G A ZCCHC11 Missense_Mutation p.R705W 0.72 deleterious(0) probably_damaging(0.982) TCGA-D3-A5GS-06 1 57417853 57417853 C T C8B Silent p.G178G 0.72 TCGA-D3-A5GS-06 1 60359172 60359172 G A CYP2J2 3'UTR 0.74 TCGA-D3-A5GS-06 1 90179797 90179797 C T LRRC8C Silent p.I556I 0.54 TCGA-D3-A5GS-06 1 94586644 94586644 C T ABCA4 5'UTR 0.67 TCGA-D3-A5GS-06 1 94654429 94654429 C T ARHGAP29 Missense_Mutation p.E549K 0.76 deleterious(0) possibly_damaging(0.654) TCGA-D3-A5GS-06 20 24994176 24994176 G A ACSS1 Silent p.Y525Y 0.39 TCGA-D3-A5GS-06 20 2841211 2841211 C T VPS16 Silent p.L162L 0.35 TCGA-D3-A5GS-06 20 29992787 29992787 G A DEFB121 Missense_Mutation p.P54S 0.52 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A5GS-06 20 3208913 3208913 G A SLC4A11 Silent p.I893I 0.32 TCGA-D3-A5GS-06 20 32207397 32207397 G - CBFA2T2 Frame_Shift_Del p.I175Ffs*104 0.30 TCGA-D3-A5GS-06 20 34241272 34241272 G A RBM12 Missense_Mutation p.P658L 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.53) TCGA-D3-A5GS-06 20 43355792 43355792 G A WISP2 Silent p.T199T 0.34 TCGA-D3-A5GS-06 20 44599949 44599949 G A ZNF335 Missense_Mutation p.A34V 0.14 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-D3-A5GS-06 20 44691322 44691322 G A NCOA5 Missense_Mutation p.P453S 0.42 tolerated(0.17) benign(0.005) TCGA-D3-A5GS-06 20 45192184 45192184 G A SLC13A3 Missense_Mutation p.R501C 0.51 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A5GS-06 20 45725766 45725766 C T EYA2 Missense_Mutation p.H283Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GS-06 20 47713066 47713066 C T CSE1L 3'UTR 0.44 TCGA-D3-A5GS-06 20 56728676 56728676 G A C20orf85 Missense_Mutation p.E49K 0.35 tolerated(0.29) benign(0.009) TCGA-D3-A5GS-06 20 56735727 56735727 C T C20orf85 Missense_Mutation p.S88F 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 20 57766236 57766236 C T ZNF831 Silent p.F54F 0.45 TCGA-D3-A5GS-06 20 57769397 57769397 G A ZNF831 Missense_Mutation p.G1108E 0.28 tolerated(1) benign(0) TCGA-D3-A5GS-06 20 5903059 5903059 C T CHGB Missense_Mutation p.A90V 0.38 tolerated(0.26) benign(0.014) TCGA-D3-A5GS-06 20 9560905 9560905 G A PAK7 Nonsense_Mutation p.Q293* 0.32 TCGA-D3-A5GS-06 21 11039189 11039189 G A BAGE2 RNA 0.04 TCGA-D3-A5GS-06 21 31869240 31869240 C T KRTAP19-4 Silent p.L63L 0.72 TCGA-D3-A5GS-06 21 45773622 45773622 G A TRPM2 Silent p.Q13Q 0.69 TCGA-D3-A5GS-06 21 46000140 46000140 C T KRTAP10-5 Missense_Mutation p.D106N 0.60 tolerated(0.33) unknown(0) TCGA-D3-A5GS-06 22 17119563 17119563 C T TPTEP1 RNA 0.51 TCGA-D3-A5GS-06 22 19496196 19496196 C T CDC45 Missense_Mutation p.A432V 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 22 24898436 24898436 C T UPB1 Intron 0.45 TCGA-D3-A5GS-06 22 29837674 29837674 C T RFPL1 Missense_Mutation p.P173S 0.40 tolerated(0.34) benign(0.138) TCGA-D3-A5GS-06 22 31011715 31011715 C T TCN2 Missense_Mutation p.P294L 0.37 deleterious(0.05) probably_damaging(0.995) TCGA-D3-A5GS-06 22 32445948 32445948 C T SLC5A1 Missense_Mutation p.R52C 0.44 deleterious(0) possibly_damaging(0.719) TCGA-D3-A5GS-06 22 33700320 33700320 G A LARGE Missense_Mutation p.P542L 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 22 37480305 37480305 G A TMPRSS6 Intron 0.46 TCGA-D3-A5GS-06 22 41277928 41277928 C T XPNPEP3 Silent p.P112P 0.33 TCGA-D3-A5GS-06 22 41609887 41609887 C T L3MBTL2 Intron 0.45 TCGA-D3-A5GS-06 22 45312488 45312488 G A PHF21B Missense_Mutation p.P79L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 22 46790149 46790149 G A CELSR1 Missense_Mutation p.P1952S 0.30 tolerated(0.05) benign(0.42) TCGA-D3-A5GS-06 2 102781440 102781440 G A IL1R1 Missense_Mutation p.D90N 0.37 deleterious(0) probably_damaging(0.988) TCGA-D3-A5GS-06 2 113763452 113763452 G A IL36A Missense_Mutation p.E2K 0.39 tolerated(0.57) benign(0.001) TCGA-D3-A5GS-06 2 120362774 120362774 G A PCDP1 Missense_Mutation p.E348K 0.36 deleterious(0.04) benign(0.061) TCGA-D3-A5GS-06 2 152349000 152349001 AT - NEB Frame_Shift_Del p.Y8258Ffs*2 0.26 TCGA-D3-A5GS-06 2 166903441 166903441 C T SCN1A Missense_Mutation p.V406I 0.36 tolerated(0.07) probably_damaging(0.996) TCGA-D3-A5GS-06 2 167163548 167163548 G A SCN9A Missense_Mutation p.R99C 0.35 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GS-06 2 167760291 167760291 C T XIRP2 Missense_Mutation p.S100F 0.38 possibly_damaging(0.864) TCGA-D3-A5GS-06 2 170025118 170025118 G A LRP2 Missense_Mutation p.P3856S 0.44 benign(0.042) TCGA-D3-A5GS-06 2 179431408 179431408 G A TTN Missense_Mutation p.P26484L 0.35 TCGA-D3-A5GS-06 2 179439256 179439256 C T TTN Missense_Mutation p.R23868Q 0.43 TCGA-D3-A5GS-06 2 179453297 179453297 G A TTN Missense_Mutation p.P21052L 0.34 TCGA-D3-A5GS-06 2 179547547 179547547 C T TTN Missense_Mutation p.E10991K 0.45 TCGA-D3-A5GS-06 2 179590565 179590565 G A TTN Silent p.I6828I 0.37 TCGA-D3-A5GS-06 2 179595913 179595913 C T TTN Missense_Mutation p.E5827K 0.33 TCGA-D3-A5GS-06 2 179597678 179597678 C T TTN Missense_Mutation p.E5409K 0.41 TCGA-D3-A5GS-06 2 18766052 18766052 C T NT5C1B Missense_Mutation p.E211K 0.38 tolerated_low_confidence(0.08) benign(0.06) TCGA-D3-A5GS-06 2 187693387 187693387 G A ZSWIM2 Missense_Mutation p.S409L 0.27 tolerated(0.1) benign(0.009) TCGA-D3-A5GS-06 2 189868499 189868499 C T COL3A1 Missense_Mutation p.P883S 0.21 unknown(0) TCGA-D3-A5GS-06 2 189904220 189904220 C T COL5A2 Missense_Mutation p.D1235N 0.32 unknown(0) TCGA-D3-A5GS-06 2 196722188 196722188 G A DNAH7 Missense_Mutation p.P2776L 0.33 deleterious(0) possibly_damaging(0.53) TCGA-D3-A5GS-06 2 196799481 196799481 C T DNAH7 Missense_Mutation p.G1102E 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 2 197872649 197872649 T C ANKRD44 Splice_Site p.X646_splice 0.41 TCGA-D3-A5GS-06 2 210574780 210574780 C T MAP2 Silent p.T1625T 0.33 TCGA-D3-A5GS-06 2 21224567 21224567 G A APOB 3'UTR 0.34 TCGA-D3-A5GS-06 2 21234342 21234342 C T APOB Missense_Mutation p.D1800N 0.34 benign(0.028) TCGA-D3-A5GS-06 2 218940293 218940293 G A RUFY4 Missense_Mutation p.G380R 0.47 tolerated(0.11) possibly_damaging(0.759) TCGA-D3-A5GS-06 2 219000488 219000488 C T CXCR2 Missense_Mutation p.R322C 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A5GS-06 2 228846397 228846397 A G SPHKAP 3'UTR 0.39 TCGA-D3-A5GS-06 2 232389900 232389900 G A NMUR1 Missense_Mutation p.R379C 0.42 deleterious(0.03) possibly_damaging(0.724) TCGA-D3-A5GS-06 2 234601617 234601617 C T UGT1A6 5'UTR 0.21 TCGA-D3-A5GS-06 2 242054769 242054769 G A PASK Silent p.P1044P 0.43 TCGA-D3-A5GS-06 2 242054770 242054770 G A PASK Missense_Mutation p.P1044L 0.43 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GS-06 2 242142852 242142852 G A ANO7 Silent p.Q330Q 0.38 TCGA-D3-A5GS-06 2 27147841 27147841 C T DPYSL5 Silent p.C116C 0.32 TCGA-D3-A5GS-06 2 27147842 27147842 C T DPYSL5 Nonsense_Mutation p.R117* 0.31 TCGA-D3-A5GS-06 2 27745405 27745405 G A GCKR Missense_Mutation p.D551N 0.40 tolerated(0.06) benign(0.316) TCGA-D3-A5GS-06 2 39931246 39931246 C T TMEM178A Silent p.I142I 0.38 TCGA-D3-A5GS-06 2 46987292 46987292 C T SOCS5 3'UTR 0.41 TCGA-D3-A5GS-06 2 48896993 48896993 G A STON1-GTF2A1L Missense_Mutation p.E1075K 0.33 deleterious(0.04) benign(0.013) TCGA-D3-A5GS-06 2 49190571 49190571 G A FSHR Silent p.I463I 0.47 TCGA-D3-A5GS-06 2 50850724 50850724 C T NRXN1 Missense_Mutation p.G321R 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 2 70188920 70188920 T C ASPRV1 5'UTR 0.40 TCGA-D3-A5GS-06 2 72362024 72362024 G A CYP26B1 Silent p.L243L 0.46 TCGA-D3-A5GS-06 2 73718149 73718149 C T ALMS1 Silent p.S3020S 0.46 TCGA-D3-A5GS-06 2 74044050 74044050 G A C2orf78 Silent p.G900G 0.20 TCGA-D3-A5GS-06 2 77745770 77745770 G A LRRTM4 Nonsense_Mutation p.Q409* 0.34 TCGA-D3-A5GS-06 2 87042609 87042609 G A CD8B 3'Flank 0.45 TCGA-D3-A5GS-06 2 89157181 89157181 G A IGKC Missense_Mutation p.P6L 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 2 90060923 90060923 C T IGKV6D-21 Silent p.F90F 0.41 TCGA-D3-A5GS-06 2 96551840 96551840 G A ANKRD36C Missense_Mutation p.S67L 0.43 tolerated_low_confidence(0.14) benign(0.304) TCGA-D3-A5GS-06 2 97530037 97530037 G A SEMA4C Missense_Mutation p.H349Y 0.38 deleterious(0.01) possibly_damaging(0.461) TCGA-D3-A5GS-06 3 113652476 113652476 C T GRAMD1C Missense_Mutation p.S443F 0.33 tolerated(0.12) possibly_damaging(0.602) TCGA-D3-A5GS-06 3 131261425 131261425 G A CPNE4 Silent p.F505F 0.43 TCGA-D3-A5GS-06 3 14566000 14566000 C T GRIP2 RNA 0.50 TCGA-D3-A5GS-06 3 15749516 15749516 C T ANKRD28 Missense_Mutation p.V458M 0.33 deleterious(0) probably_damaging(0.992) TCGA-D3-A5GS-06 3 158320593 158320593 T C MLF1 Intron 0.37 TCGA-D3-A5GS-06 3 167223161 167223161 C T WDR49 Missense_Mutation p.E588K 0.35 tolerated(0.09) benign(0.01) TCGA-D3-A5GS-06 3 172674552 172674552 C T SPATA16 Silent p.A332A 0.33 TCGA-D3-A5GS-06 3 175184918 175184918 C T NAALADL2 Silent p.F493F 0.48 TCGA-D3-A5GS-06 3 183454550 183454550 C T YEATS2 Missense_Mutation p.P286L 0.40 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GS-06 3 195498553 195498553 G A MUC4 Silent p.F4404F 0.42 TCGA-D3-A5GS-06 3 19554522 19554522 G A KCNH8 Missense_Mutation p.E714K 0.44 tolerated(0.07) benign(0.219) TCGA-D3-A5GS-06 3 197009613 197009613 G A DLG1 Silent p.S85S 0.43 TCGA-D3-A5GS-06 3 21462918 21462918 C T ZNF385D Missense_Mutation p.E326K 0.20 tolerated(0.06) benign(0.054) TCGA-D3-A5GS-06 3 36422196 36422196 G A STAC Missense_Mutation p.G21S 0.30 tolerated(0.78) benign(0.001) TCGA-D3-A5GS-06 3 37512509 37512509 G A ITGA9 Missense_Mutation p.G66D 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 3 38103860 38103860 G A DLEC1 Splice_Site p.X291_splice 0.33 TCGA-D3-A5GS-06 3 38639317 38639317 G A SCN5A Missense_Mutation p.T722I 0.41 tolerated(0.09) benign(0.008) TCGA-D3-A5GS-06 3 3886612 3886612 A G LRRN1 Missense_Mutation p.N96S 0.38 deleterious(0) probably_damaging(0.987) TCGA-D3-A5GS-06 3 42572422 42572422 G A VIPR1 Nonsense_Mutation p.W263* 0.41 TCGA-D3-A5GS-06 3 42740244 42740244 C T HHATL Missense_Mutation p.A147T 0.35 tolerated(0.3) benign(0.005) TCGA-D3-A5GS-06 3 46937273 46937273 G A PTH1R Missense_Mutation p.G76E 0.34 tolerated(0.07) benign(0.004) TCGA-D3-A5GS-06 3 46937274 46937274 G A PTH1R Silent p.G76G 0.34 TCGA-D3-A5GS-06 3 51263120 51263120 G A DOCK3 Silent p.G431G 0.31 TCGA-D3-A5GS-06 3 51992264 51992264 G A PCBP4 Missense_Mutation p.P342L 0.36 tolerated(0.11) possibly_damaging(0.663) TCGA-D3-A5GS-06 3 54786654 54786654 G A CACNA2D3 Missense_Mutation p.R399Q 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GS-06 3 7348308 7348308 C T GRM7 Silent p.I334I 0.32 TCGA-D3-A5GS-06 3 78680339 78680339 C T ROBO1 Missense_Mutation p.E1200K 0.25 tolerated(0.05) benign(0.207) TCGA-D3-A5GS-06 3 89521711 89521711 G A EPHA3 Missense_Mutation p.E930K 0.31 deleterious(0) benign(0.075) TCGA-D3-A5GS-06 3 98109721 98109721 C T OR5K3 Missense_Mutation p.S71F 0.38 deleterious(0.02) benign(0.052) TCGA-D3-A5GS-06 4 100434269 100434269 C T C4orf17 Nonsense_Mutation p.Q11* 0.44 TCGA-D3-A5GS-06 4 107845215 107845215 C T DKK2 Missense_Mutation p.E226K 0.37 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GS-06 4 115754821 115754821 C T NDST4 Missense_Mutation p.M779I 0.38 deleterious(0) probably_damaging(0.956) TCGA-D3-A5GS-06 4 126372726 126372726 G A FAT4 Missense_Mutation p.E3519K 0.37 probably_damaging(0.981) TCGA-D3-A5GS-06 4 1309274 1309274 C A MAEA Silent p.P114P 0.22 TCGA-D3-A5GS-06 4 156136139 156136139 C T NPY2R Missense_Mutation p.H350Y 0.43 tolerated(0.23) benign(0.002) TCGA-D3-A5GS-06 4 162307335 162307335 C T FSTL5 Missense_Mutation p.G703D 0.43 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GS-06 4 162307336 162307336 C T FSTL5 Missense_Mutation p.G703S 0.42 tolerated(0.26) probably_damaging(0.994) TCGA-D3-A5GS-06 4 164271851 164271851 G A NPY5R Missense_Mutation p.M142I 0.34 tolerated(0.06) benign(0.009) TCGA-D3-A5GS-06 4 16504116 16504116 G A LDB2 3'UTR 0.16 TCGA-D3-A5GS-06 4 16504123 16504123 G A LDB2 3'UTR 0.18 TCGA-D3-A5GS-06 4 169393646 169393646 C T DDX60L Missense_Mutation p.E12K 0.50 tolerated(1) benign(0.001) TCGA-D3-A5GS-06 4 20530587 20530587 G A SLIT2 Missense_Mutation p.R493Q 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A5GS-06 4 25416220 25416220 G A ANAPC4 Splice_Site p.X575_splice 0.42 TCGA-D3-A5GS-06 4 57181315 57181315 C T KIAA1211 Silent p.L549L 0.47 TCGA-D3-A5GS-06 4 6055815 6055815 G A JAKMIP1 Nonsense_Mutation p.Q590* 0.31 TCGA-D3-A5GS-06 4 657961 657961 A T PDE6B Missense_Mutation p.S694C 0.29 deleterious(0.01) possibly_damaging(0.841) TCGA-D3-A5GS-06 4 67142633 67142633 C T MIR1269A RNA 0.40 TCGA-D3-A5GS-06 4 68930597 68930597 C T TMPRSS11F Missense_Mutation p.R274Q 0.41 tolerated(0.13) possibly_damaging(0.528) TCGA-D3-A5GS-06 4 77317555 77317555 G A CCDC158 Missense_Mutation p.P52L 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A5GS-06 4 88415045 88415045 C T SPARCL1 Missense_Mutation p.E303K 0.37 deleterious(0.04) benign(0.055) TCGA-D3-A5GS-06 4 95147387 95147387 C T SMARCAD1 Missense_Mutation p.S103F 0.38 tolerated_low_confidence(0.29) benign(0.173) TCGA-D3-A5GS-06 5 13871727 13871727 C T DNAH5 Missense_Mutation p.E1182K 0.26 benign(0.292) TCGA-D3-A5GS-06 5 140530480 140530480 G A PCDHB6 Silent p.L214L 0.33 TCGA-D3-A5GS-06 5 140711333 140711333 C T PCDHGA1 Missense_Mutation p.P361L 0.31 tolerated_low_confidence(0.21) benign(0.029) TCGA-D3-A5GS-06 5 149216496 149216496 G A PPARGC1B Silent p.G826G 0.32 TCGA-D3-A5GS-06 5 149262997 149262997 G A PDE6A Silent p.I710I 0.43 TCGA-D3-A5GS-06 5 153433377 153433377 T C MFAP3 3'UTR 0.47 TCGA-D3-A5GS-06 5 156590244 156590244 G A FAM71B Silent p.A344A 0.42 TCGA-D3-A5GS-06 5 156590245 156590245 G A FAM71B Missense_Mutation p.A344V 0.42 tolerated(0.66) benign(0.007) TCGA-D3-A5GS-06 5 172744943 172744943 G A STC2 Silent p.A272A 0.41 TCGA-D3-A5GS-06 5 178566982 178566982 C T ADAMTS2 Missense_Mutation p.G562S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 5 31294133 31294133 G A CDH6 Missense_Mutation p.G98E 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GS-06 5 35070292 35070292 G A PRLR Missense_Mutation p.R207C 0.52 deleterious(0) probably_damaging(0.988) TCGA-D3-A5GS-06 5 35874607 35874607 C T IL7R Silent p.L255L 0.29 TCGA-D3-A5GS-06 5 40964849 40964849 G A C7 Missense_Mutation p.G586S 0.59 tolerated(0.58) benign(0.038) TCGA-D3-A5GS-06 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.44 deleterious(0.01) probably_damaging(0.912) TCGA-D3-A5GS-06 5 78328649 78328649 C T DMGDH Missense_Mutation p.E460K 0.32 deleterious(0.01) benign(0.279) TCGA-D3-A5GS-06 5 79034076 79034076 G A CMYA5 Missense_Mutation p.G3163E 0.39 benign(0.013) TCGA-D3-A5GS-06 5 89979729 89979729 C T GPR98 Silent p.I1997I 0.68 TCGA-D3-A5GS-06 5 96237351 96237351 C T ERAP2 Nonsense_Mutation p.Q572* 0.31 TCGA-D3-A5GS-06 6 100395776 100395776 C T MCHR2 Missense_Mutation p.G85E 0.38 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A5GS-06 6 101053472 101053472 G A ASCC3 Missense_Mutation p.L1717F 0.50 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GS-06 6 10557237 10557237 C T GCNT2 Intron 0.39 TCGA-D3-A5GS-06 6 111697604 111697604 C T REV3L Missense_Mutation p.V652I 0.32 deleterious_low_confidence(0.04) benign(0.024) TCGA-D3-A5GS-06 6 117232106 117232106 C T RFX6 Silent p.F227F 0.35 TCGA-D3-A5GS-06 6 128388776 128388776 G A PTPRK Missense_Mutation p.P682L 0.37 tolerated(0.08) benign(0.356) TCGA-D3-A5GS-06 6 138613105 138613105 C T KIAA1244 Missense_Mutation p.R1095W 0.38 tolerated(0.05) possibly_damaging(0.847) TCGA-D3-A5GS-06 6 139094905 139094905 C T CCDC28A Missense_Mutation p.R32C 0.37 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-D3-A5GS-06 6 143095664 143095664 G A HIVEP2 Missense_Mutation p.S71F 0.35 deleterious(0.01) possibly_damaging(0.613) TCGA-D3-A5GS-06 6 158294154 158294154 G A SNX9 Silent p.L40L 0.33 TCGA-D3-A5GS-06 6 159206477 159206477 G A EZR Missense_Mutation p.L111F 0.38 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GS-06 6 161139840 161139840 C T PLG Missense_Mutation p.P356S 0.36 tolerated(0.29) benign(0.004) TCGA-D3-A5GS-06 6 26452036 26452036 C T BTN3A3 Silent p.V384V 0.53 TCGA-D3-A5GS-06 6 28540041 28540041 G A SCAND3 Missense_Mutation p.P1209S 0.42 deleterious_low_confidence(0.02) benign(0.261) TCGA-D3-A5GS-06 6 31475177 31475177 G A MICB Missense_Mutation p.G298E 0.34 deleterious(0.02) possibly_damaging(0.834) TCGA-D3-A5GS-06 6 32782254 32782254 C T HLA-DOB Silent p.Q162Q 0.40 TCGA-D3-A5GS-06 6 36742796 36742796 G A CPNE5 Missense_Mutation p.P227S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GS-06 6 38891766 38891766 G A DNAH8 Splice_Site p.X3380_splice 0.41 TCGA-D3-A5GS-06 6 55922468 55922468 C T COL21A1 Missense_Mutation p.G954E 0.38 deleterious(0) unknown(0) TCGA-D3-A5GS-06 6 69944955 69944955 C T BAI3 Missense_Mutation p.T880I 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A5GS-06 6 70071300 70071300 G A BAI3 Missense_Mutation p.E1379K 0.47 tolerated(0.47) probably_damaging(0.98) TCGA-D3-A5GS-06 6 73951135 73951135 G A KHDC1 3'UTR 0.21 TCGA-D3-A5GS-06 6 76564889 76564889 C T MYO6 Missense_Mutation p.S371F 0.38 tolerated(0.06) unknown(0) TCGA-D3-A5GS-06 6 76720889 76720889 C T IMPG1 Missense_Mutation p.G287E 0.40 deleterious(0.01) possibly_damaging(0.773) TCGA-D3-A5GS-06 6 84834773 84834773 G A KIAA1009 3'UTR 0.50 TCGA-D3-A5GS-06 6 86176949 86176949 G C NT5E Missense_Mutation p.V171L 0.33 deleterious(0.04) possibly_damaging(0.479) TCGA-D3-A5GS-06 6 96651051 96651051 G A FUT9 Missense_Mutation p.G7E 0.38 tolerated(0.67) possibly_damaging(0.755) TCGA-D3-A5GS-06 6 96652000 96652000 T C FUT9 Silent p.T323T 0.32 TCGA-D3-A5GS-06 7 100246254 100246254 G A ACTL6B Silent p.F198F 0.47 TCGA-D3-A5GS-06 7 102993332 102993332 T A PSMC2 Intron 0.49 TCGA-D3-A5GS-06 7 102993334 102993334 C T PSMC2 Intron 0.49 TCGA-D3-A5GS-06 7 103050936 103050936 G A SLC26A5 Missense_Mutation p.R211C 0.25 deleterious(0) probably_damaging(0.937) TCGA-D3-A5GS-06 7 103050937 103050937 G A SLC26A5 Silent p.V210V 0.23 TCGA-D3-A5GS-06 7 103194177 103194177 C T RELN Missense_Mutation p.E1967K 0.64 deleterious(0.03) possibly_damaging(0.76) TCGA-D3-A5GS-06 7 117199609 117199609 C T CFTR Missense_Mutation p.S495F 0.47 deleterious(0) probably_damaging(0.924) TCGA-D3-A5GS-06 7 117513499 117513499 C T CTTNBP2 5'UTR 0.19 TCGA-D3-A5GS-06 7 128447549 128447549 C T CCDC136 Missense_Mutation p.L519F 0.44 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GS-06 7 128488617 128488617 C T FLNC Missense_Mutation p.P1528L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 7 138758704 138758704 G A ZC3HAV1 Silent p.S590S 0.26 TCGA-D3-A5GS-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GS-06 7 142119881 142119881 G A TRBV7-7 Silent p.L96L 0.30 TCGA-D3-A5GS-06 7 142131675 142131675 G A TRBV5-6 Missense_Mutation p.P27L 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-D3-A5GS-06 7 143141359 143141359 C T TAS2R60 Missense_Mutation p.P272S 0.18 tolerated(0.57) benign(0.377) TCGA-D3-A5GS-06 7 143175873 143175873 G A TAS2R41 Missense_Mutation p.G303D 0.54 tolerated(0.09) benign(0.028) TCGA-D3-A5GS-06 7 144063504 144063504 C T ARHGEF5 Missense_Mutation p.R1071W 0.54 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GS-06 7 144075860 144075860 C T ARHGEF5 Missense_Mutation p.P1513S 0.22 deleterious(0.05) benign(0.259) TCGA-D3-A5GS-06 7 151716758 151716758 C T GALNTL5 Silent p.L402L 0.29 TCGA-D3-A5GS-06 7 151855960 151855960 G A KMT2C Silent p.T3886T 0.28 TCGA-D3-A5GS-06 7 22196469 22196469 T C RAPGEF5 Missense_Mutation p.N379S 0.24 tolerated(0.14) benign(0.018) TCGA-D3-A5GS-06 7 34867078 34867078 C T NPSR1 Silent p.L182L 0.29 TCGA-D3-A5GS-06 7 45688382 45688382 G A ADCY1 Missense_Mutation p.M378I 0.34 deleterious(0.01) probably_damaging(0.93) TCGA-D3-A5GS-06 7 5355675 5355675 G A TNRC18 Silent p.D2258D 0.56 TCGA-D3-A5GS-06 7 57188459 57188459 G A ZNF479 Silent p.S221S 0.50 TCGA-D3-A5GS-06 7 62752538 62752538 G A ZNF733P RNA 0.30 TCGA-D3-A5GS-06 7 75034185 75034185 G A TRIM73 Missense_Mutation p.D187N 0.57 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GS-06 7 81334773 81334773 C T HGF Missense_Mutation p.G648E 0.19 deleterious(0.03) probably_damaging(0.985) TCGA-D3-A5GS-06 7 82545679 82545679 C T PCLO Missense_Mutation p.E3875K 0.29 unknown(0) TCGA-D3-A5GS-06 7 92764234 92764234 C T SAMD9L Missense_Mutation p.D351N 0.63 tolerated(1) benign(0.045) TCGA-D3-A5GS-06 7 97821683 97821683 T G LMTK2 Missense_Mutation p.F636V 0.55 deleterious(0) possibly_damaging(0.611) TCGA-D3-A5GS-06 7 99328745 99328745 C T CYP3A7 Silent p.K34K 0.31 TCGA-D3-A5GS-06 8 101076105 101076105 C T RGS22 Silent p.K297K 0.29 TCGA-D3-A5GS-06 8 101078454 101078454 G A RGS22 Missense_Mutation p.S222L 0.56 deleterious(0.02) possibly_damaging(0.891) TCGA-D3-A5GS-06 8 107718676 107718676 G A OXR1 Silent p.E310E 0.27 TCGA-D3-A5GS-06 8 108334232 108334232 C T ANGPT1 Missense_Mutation p.E234K 0.56 tolerated(0.06) possibly_damaging(0.501) TCGA-D3-A5GS-06 8 117768056 117768056 G A EIF3H 5'UTR 0.48 TCGA-D3-A5GS-06 8 125132136 125132136 G A FER1L6 3'UTR 0.26 TCGA-D3-A5GS-06 8 144942134 144942134 C T EPPK1 Missense_Mutation p.G1763E 0.41 probably_damaging(0.946) TCGA-D3-A5GS-06 8 144944486 144944486 G A EPPK1 Missense_Mutation p.P979L 0.45 benign(0) TCGA-D3-A5GS-06 8 144991234 144991234 G A PLEC Missense_Mutation p.S4389F 0.36 probably_damaging(0.999) TCGA-D3-A5GS-06 8 145006586 145006586 G A PLEC Silent p.A790A 0.36 TCGA-D3-A5GS-06 8 1497620 1497620 C T DLGAP2 Missense_Mutation p.P254L 0.65 tolerated(0.14) benign(0.002) TCGA-D3-A5GS-06 8 23190949 23190949 C T LOXL2 Missense_Mutation p.G311R 0.29 tolerated(0.39) benign(0.001) TCGA-D3-A5GS-06 8 24772257 24772257 C T NEFM Silent p.I317I 0.37 TCGA-D3-A5GS-06 8 27925074 27925074 C T NUGGC Missense_Mutation p.R223K 0.60 tolerated(1) benign(0.034) TCGA-D3-A5GS-06 8 30210823 30210823 G A TUBBP1 RNA 0.41 TCGA-D3-A5GS-06 8 3081372 3081372 G A CSMD1 Silent p.L1455L 0.78 TCGA-D3-A5GS-06 8 3165842 3165842 G A CSMD1 Missense_Mutation p.S1272L 0.70 benign(0.146) TCGA-D3-A5GS-06 8 48308943 48308943 C T SPIDR Missense_Mutation p.S178F 0.43 deleterious(0) possibly_damaging(0.837) TCGA-D3-A5GS-06 8 52287174 52287174 C T PXDNL Silent p.R1225R 0.42 TCGA-D3-A5GS-06 8 52321411 52321411 G A PXDNL Missense_Mutation p.P925S 0.44 tolerated(0.42) benign(0.027) TCGA-D3-A5GS-06 8 53074022 53074022 C T ST18 Missense_Mutation p.D503N 0.35 deleterious(0) probably_damaging(0.936) TCGA-D3-A5GS-06 8 57079135 57079135 G A PLAG1 Silent p.S390S 0.28 TCGA-D3-A5GS-06 8 73979646 73979646 C T SBSPON Missense_Mutation p.G242E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A5GS-06 8 77765556 77765556 G A ZFHX4 Silent p.R2133R 0.41 TCGA-D3-A5GS-06 8 87076611 87076611 G A PSKH2 Silent p.L145L 0.38 TCGA-D3-A5GS-06 8 92999117 92999117 G A RUNX1T1 Missense_Mutation p.H370Y 0.45 tolerated(0.05) benign(0.216) TCGA-D3-A5GS-06 8 94935195 94935195 G A PDP1 Missense_Mutation p.G328D 0.42 tolerated(0.1) probably_damaging(1) TCGA-D3-A5GS-06 8 95140436 95140436 T G CDH17 3'UTR 0.54 TCGA-D3-A5GS-06 9 104239063 104239063 G A TMEM246 Silent p.I104I 0.43 TCGA-D3-A5GS-06 9 104432855 104432855 C T GRIN3A Nonsense_Mutation p.W613* 0.27 TCGA-D3-A5GS-06 9 104449350 104449350 C T GRIN3A Missense_Mutation p.D278N 0.32 tolerated(0.36) benign(0.403) TCGA-D3-A5GS-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.35 TCGA-D3-A5GS-06 9 137313635 137313635 C T RXRA Silent p.V298V 0.32 TCGA-D3-A5GS-06 9 139100613 139100613 G A QSOX2 Silent p.S686S 0.36 TCGA-D3-A5GS-06 9 139407552 139407552 C T NOTCH1 Silent p.A796A 0.36 TCGA-D3-A5GS-06 9 140674131 140674131 C T EHMT1 Missense_Mutation p.A746V 0.40 tolerated(0.19) possibly_damaging(0.888) TCGA-D3-A5GS-06 9 140674132 140674132 C T EHMT1 Silent p.A746A 0.40 TCGA-D3-A5GS-06 9 14775984 14775984 G T FREM1 Missense_Mutation p.Q1554K 0.66 tolerated(0.56) benign(0.004) TCGA-D3-A5GS-06 9 21971053 21971053 G A CDKN2A Missense_Mutation p.A102V 0.89 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GS-06 9 35562910 35562910 C T FAM166B Missense_Mutation p.G152R 0.38 tolerated(0.52) benign(0.035) TCGA-D3-A5GS-06 9 38571906 38571906 C T ANKRD18A 3'UTR 0.50 TCGA-D3-A5GS-06 9 72521022 72521022 C T C9orf135 Silent p.P220P 0.37 TCGA-D3-A5GS-06 9 78848418 78848418 G A PCSK5 Nonsense_Mutation p.W924* 0.32 TCGA-D3-A5GS-06 9 94499740 94499740 G A ROR2 Silent p.F185F 0.41 TCGA-D3-A5GS-06 X 102979937 102979937 C T GLRA4 Missense_Mutation p.E31K 0.92 tolerated_low_confidence(0.13) benign(0.002) TCGA-D3-A5GS-06 X 104464956 104464956 G A TEX13A Silent p.S42S 0.72 TCGA-D3-A5GS-06 X 104464957 104464957 G A TEX13A Missense_Mutation p.S42F 0.70 deleterious(0) probably_damaging(0.979) TCGA-D3-A5GS-06 X 105450200 105450200 G A MUM1L1 Missense_Mutation p.E259K 0.76 tolerated(0.19) benign(0.001) TCGA-D3-A5GS-06 X 118250483 118250483 C T KIAA1210 Missense_Mutation p.R209Q 0.70 tolerated(0.93) benign(0.001) TCGA-D3-A5GS-06 X 130222605 130222605 C T ARHGAP36 Missense_Mutation p.S497F 0.68 deleterious(0) possibly_damaging(0.775) TCGA-D3-A5GS-06 X 132437219 132437219 C T GPC4 Silent p.G481G 0.73 TCGA-D3-A5GS-06 X 140995253 140995253 C T MAGEC1 Missense_Mutation p.S688F 0.74 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A5GS-06 X 141291724 141291724 G A MAGEC2 Missense_Mutation p.P17L 0.80 tolerated_low_confidence(0.05) benign(0.018) TCGA-D3-A5GS-06 X 142717538 142717538 C T SLITRK4 Missense_Mutation p.E463K 0.90 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GS-06 X 147019005 147019005 C T FMR1 Silent p.S337S 0.75 TCGA-D3-A5GS-06 X 17152000 17152000 C T REPS2 Silent p.S544S 0.69 TCGA-D3-A5GS-06 X 68060319 68060319 C T EFNB1 Missense_Mutation p.P288L 0.77 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GS-06 X 69353774 69353774 C T IGBP1 5'UTR 0.62 TCGA-D3-A5GS-06 X 69425012 69425012 G A DGAT2L6 3'UTR 0.73 TCGA-D3-A5GS-06 X 86772918 86772918 G A KLHL4 Missense_Mutation p.E8K 0.97 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A5GT-01 10 70404869 70404869 A G TET1 Missense_Mutation p.K795E 0.51 tolerated(0.2) benign(0.191) TCGA-D3-A5GT-01 11 61077377 61077377 G A DDB1 Silent p.C819C 0.36 TCGA-D3-A5GT-01 13 44455134 44455134 G T LACC1 Missense_Mutation p.V5F 0.33 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-D3-A5GT-01 14 21542168 21542168 A G ARHGEF40 Silent p.A93A 0.30 TCGA-D3-A5GT-01 17 27382105 27382105 G T PIPOX Missense_Mutation p.A278S 0.42 tolerated(0.18) benign(0.057) TCGA-D3-A5GT-01 19 39789131 39789131 C T IFNL1 Missense_Mutation p.T193M 0.13 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D3-A5GT-01 19 54485495 54485495 G A CACNG8 Missense_Mutation p.V224I 0.32 deleterious(0.02) benign(0.191) TCGA-D3-A5GT-01 1 150414367 150414368 - TTTT RPRD2 Frame_Shift_Ins p.K150Ffs*2 0.19 TCGA-D3-A5GT-01 1 247654766 247654766 G A OR2W5 RNA 0.23 TCGA-D3-A5GT-01 22 31042978 31042978 G A SLC35E4 Missense_Mutation p.R338Q 0.34 tolerated(0.28) benign(0.072) TCGA-D3-A5GT-01 2 179425173 179425173 C A TTN Silent p.V28562V 0.22 TCGA-D3-A5GT-01 2 21235473 21235473 C T APOB Missense_Mutation p.D1423N 0.33 benign(0.318) TCGA-D3-A5GT-01 2 242154251 242154251 C T ANO7 Missense_Mutation p.A641V 0.42 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GT-01 2 99012610 99012610 A G CNGA3 Missense_Mutation p.K326R 0.62 tolerated(0.08) benign(0.414) TCGA-D3-A5GT-01 3 100621501 100621501 G A ABI3BP Nonsense_Mutation p.R104* 0.34 TCGA-D3-A5GT-01 3 128127069 128127069 C T EEFSEC Silent p.F586F 0.53 TCGA-D3-A5GT-01 4 155719277 155719277 G T RBM46 Nonsense_Mutation p.E156* 0.48 TCGA-D3-A5GT-01 4 62935845 62935845 C T LPHN3 Missense_Mutation p.A1210V 0.43 tolerated(0.09) probably_damaging(0.926) TCGA-D3-A5GT-01 4 7728540 7728540 C T SORCS2 Missense_Mutation p.R927W 0.17 tolerated(0.06) possibly_damaging(0.776) TCGA-D3-A5GT-01 6 42147001 42147001 T - GUCA1A Frame_Shift_Del p.F156Lfs*2 0.11 TCGA-D3-A5GT-01 7 131982849 131982849 C T PLXNA4 Splice_Site p.X501_splice 0.48 TCGA-D3-A5GT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GT-01 7 73467615 73467615 G T ELN Missense_Mutation p.G358W 0.53 unknown(0) TCGA-D3-A5GT-01 7 76940739 76940739 T C GSAP Missense_Mutation p.N834S 0.08 deleterious(0.04) benign(0.069) TCGA-D3-A5GT-01 7 92164086 92164086 A T RBM48 Missense_Mutation p.R273S 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GT-01 8 145747957 145747957 C T LRRC24 Missense_Mutation p.E482K 0.30 tolerated_low_confidence(0.17) benign(0.167) TCGA-D3-A5GT-01 8 73850042 73850054 CTCCCAGGGGCAA - KCNB2 Frame_Shift_Del p.L818Gfs*24 0.13 TCGA-D3-A5GT-01 9 119124969 119124969 C T PAPPA Silent p.N1482N 0.36 TCGA-D3-A5GT-01 9 140109296 140109296 C G NDOR1 Missense_Mutation p.H297Q 0.51 tolerated(0.39) benign(0.022) TCGA-D3-A5GU-06 10 101120632 101120636 GAAGC AAGG CNNM1 Frame_Shift_Del p.K587Rfs*17 0.34 TCGA-D3-A5GU-06 10 103869144 103869144 G A LDB1 Missense_Mutation p.P285S 0.53 deleterious(0.02) probably_damaging(0.986) TCGA-D3-A5GU-06 10 103869145 103869145 G A LDB1 Silent p.P284P 0.53 TCGA-D3-A5GU-06 10 105657312 105657312 G A OBFC1 Silent p.S249S 0.80 TCGA-D3-A5GU-06 10 106124558 106124558 G A CCDC147 Missense_Mutation p.V170I 0.81 tolerated(0.09) possibly_damaging(0.69) TCGA-D3-A5GU-06 10 112044685 112044685 G A MXI1 Silent p.P276P 0.61 TCGA-D3-A5GU-06 10 116698068 116698068 C T TRUB1 Missense_Mutation p.S19F 0.68 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A5GU-06 10 123846757 123846757 C T TACC2 Missense_Mutation p.P1581L 0.35 possibly_damaging(0.859) TCGA-D3-A5GU-06 10 128209981 128209981 G C C10orf90 5'UTR 0.56 TCGA-D3-A5GU-06 10 128936092 128936092 C T FAM196A 3'UTR 0.27 TCGA-D3-A5GU-06 10 20568804 20568804 T A PLXDC2 3'UTR 0.73 TCGA-D3-A5GU-06 10 24762637 24762637 G A KIAA1217 Missense_Mutation p.E443K 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A5GU-06 10 24813542 24813542 C T KIAA1217 Missense_Mutation p.S916F 0.58 deleterious(0.01) benign(0.16) TCGA-D3-A5GU-06 10 27702324 27702324 G A PTCHD3 Missense_Mutation p.P286S 0.39 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GU-06 10 28023636 28023636 G A MKX Missense_Mutation p.S196L 0.60 tolerated(0.09) benign(0.098) TCGA-D3-A5GU-06 10 34666938 34666938 G A PARD3 Missense_Mutation p.A499V 0.71 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 10 3821668 3821668 C T KLF6 3'UTR 0.71 TCGA-D3-A5GU-06 10 43601940 43601940 C T RET Silent p.T328T 0.67 TCGA-D3-A5GU-06 10 44139976 44139976 C T ZNF32 Missense_Mutation p.R115K 0.75 tolerated(0.18) benign(0.205) TCGA-D3-A5GU-06 10 48371163 48371163 A C ZNF488 Missense_Mutation p.K211Q 0.85 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A5GU-06 10 51562362 51562362 C T MSMB Missense_Mutation p.P103S 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GU-06 10 51562363 51562363 C T MSMB Missense_Mutation p.P103L 0.69 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 10 63958147 63958147 A G RTKN2 Silent p.I450I 0.70 TCGA-D3-A5GU-06 10 81373699 81373699 C T SFTPA1 Missense_Mutation p.P208S 0.66 tolerated(0.67) benign(0.02) TCGA-D3-A5GU-06 10 81697706 81697706 C T SFTPD Missense_Mutation p.D344N 0.65 tolerated(1) benign(0.007) TCGA-D3-A5GU-06 10 82369194 82369194 G A SH2D4B Missense_Mutation p.R291H 0.70 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A5GU-06 11 100999688 100999688 C T PGR Silent p.G38G 0.69 TCGA-D3-A5GU-06 11 101325831 101325831 A G TRPC6 Missense_Mutation p.V829A 0.77 tolerated(0.55) benign(0.013) TCGA-D3-A5GU-06 11 106558202 106558202 C T GUCY1A2 3'UTR 0.67 TCGA-D3-A5GU-06 11 107966294 107966300 AGGTAAC - CUL5 Frame_Shift_Del p.E594Afs*42 0.34 TCGA-D3-A5GU-06 11 110462768 110462768 G A ARHGAP20 Missense_Mutation p.P359L 0.78 deleterious(0.04) benign(0.013) TCGA-D3-A5GU-06 11 1155717 1155717 G A MUC5AC Silent p.R135R 0.67 TCGA-D3-A5GU-06 11 117314656 117314656 A T DSCAML1 Missense_Mutation p.S1330T 0.57 tolerated(0.24) benign(0.02) TCGA-D3-A5GU-06 11 119215467 119215467 C T MFRP Missense_Mutation p.G258E 0.71 tolerated(0.21) benign(0.29) TCGA-D3-A5GU-06 11 123901067 123901067 G A OR10G8 Silent p.V246V 0.69 TCGA-D3-A5GU-06 11 1275419 1275419 C T MUC5B Silent p.I5105I 0.39 TCGA-D3-A5GU-06 11 129782022 129782022 G A PRDM10 Silent p.I984I 0.69 TCGA-D3-A5GU-06 11 130779926 130779926 G A SNX19 Missense_Mutation p.S674F 0.70 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 11 130785392 130785394 ACG CA SNX19 Frame_Shift_Del p.V148Gfs*12 0.48 TCGA-D3-A5GU-06 11 17141516 17141516 G A PIK3C2A Missense_Mutation p.S888F 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A5GU-06 11 18062201 18062201 T C TPH1 Missense_Mutation p.I37V 0.50 tolerated(1) benign(0.164) TCGA-D3-A5GU-06 11 19076889 19076889 C T MRGPRX2 3'UTR 0.76 TCGA-D3-A5GU-06 11 47361245 47361245 C T MYBPC3 Missense_Mutation p.G675E 0.56 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GU-06 11 47593296 47593296 G A PTPMT1 3'UTR 0.62 TCGA-D3-A5GU-06 11 47758197 47758197 G A FNBP4 Missense_Mutation p.P518S 0.29 deleterious(0.03) benign(0.408) TCGA-D3-A5GU-06 11 5173505 5173505 G A OR52A1 Missense_Mutation p.P32L 0.41 deleterious(0.03) benign(0.077) TCGA-D3-A5GU-06 11 558322 558322 G A C11orf35 Intron 0.82 TCGA-D3-A5GU-06 11 56020545 56020545 G A OR5T3 Missense_Mutation p.M290I 0.35 tolerated(0.21) benign(0.038) TCGA-D3-A5GU-06 11 56949593 56949593 G A LRRC55 Missense_Mutation p.D76N 0.29 tolerated(0.69) benign(0.003) TCGA-D3-A5GU-06 11 57077227 57077227 G A TNKS1BP1 Silent p.F986F 0.74 TCGA-D3-A5GU-06 11 57137476 57137476 C T P2RX3 3'UTR 0.39 TCGA-D3-A5GU-06 11 58391895 58391895 G A CNTF Nonsense_Mutation p.W168* 0.32 TCGA-D3-A5GU-06 11 58391896 58391896 G A CNTF Nonsense_Mutation p.W168* 0.32 TCGA-D3-A5GU-06 11 5862630 5862630 T C OR52E6 Silent p.L166L 0.70 TCGA-D3-A5GU-06 11 5878597 5878597 G A OR52E8 Silent p.F112F 0.34 TCGA-D3-A5GU-06 11 59861536 59861536 G A MS4A2 Splice_Site p.X212_splice 0.77 TCGA-D3-A5GU-06 11 60268557 60268557 G A MS4A12 Missense_Mutation p.G106R 0.65 deleterious(0.04) probably_damaging(0.964) TCGA-D3-A5GU-06 11 6048298 6048300 AGG GA OR56A1 Frame_Shift_Del p.T212Ifs*18 0.41 TCGA-D3-A5GU-06 11 62483029 62483029 G A HNRNPUL2 Silent p.Y702Y 0.28 TCGA-D3-A5GU-06 11 62483030 62483030 T A HNRNPUL2 Missense_Mutation p.Y702F 0.27 deleterious(0.02) benign(0.153) TCGA-D3-A5GU-06 11 6652952 6652952 G A DCHS1 Silent p.P1190P 0.25 TCGA-D3-A5GU-06 11 67049760 67049760 G A ADRBK1 Missense_Mutation p.D326N 0.75 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A5GU-06 11 67432876 67432876 G A ALDH3B2 Nonsense_Mutation p.Q196* 0.62 TCGA-D3-A5GU-06 11 67432877 67432877 G C ALDH3B2 Silent p.P195P 0.62 TCGA-D3-A5GU-06 11 67789219 67789219 C G ALDH3B1 Silent p.P275P 0.06 TCGA-D3-A5GU-06 11 67789220 67789220 C T ALDH3B1 Nonsense_Mutation p.Q276* 0.07 TCGA-D3-A5GU-06 11 68748252 68748252 C T MRGPRD Silent p.L68L 0.69 TCGA-D3-A5GU-06 11 70319203 70319203 G A SHANK2 Missense_Mutation p.S1775L 0.27 tolerated(0.08) benign(0.307) TCGA-D3-A5GU-06 11 71932097 71932097 C T FOLR2 Nonsense_Mutation p.Q112* 0.95 TCGA-D3-A5GU-06 11 74800540 74800540 G A OR2AT4 Silent p.T73T 0.71 TCGA-D3-A5GU-06 11 77672120 77672120 G A INTS4 Missense_Mutation p.S179F 0.67 tolerated(0.73) benign(0.017) TCGA-D3-A5GU-06 11 89891353 89891353 C T NAALAD2 Silent p.I279I 0.74 TCGA-D3-A5GU-06 11 92616090 92616090 C T FAT3 Silent p.I4156I 0.52 TCGA-D3-A5GU-06 11 93492939 93492939 C T C11orf54 Missense_Mutation p.S180F 0.73 deleterious(0) possibly_damaging(0.794) TCGA-D3-A5GU-06 12 10339077 10339077 C T TMEM52B Missense_Mutation p.R46C 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 12 104476331 104476331 C T HCFC2 Missense_Mutation p.S274L 0.35 tolerated(0.14) benign(0.253) TCGA-D3-A5GU-06 12 106633540 106633540 G A CKAP4 Silent p.L357L 0.34 TCGA-D3-A5GU-06 12 10783714 10783714 G A STYK1 Silent p.P127P 0.13 TCGA-D3-A5GU-06 12 110222242 110222242 C T TRPV4 Silent p.R779R 0.44 TCGA-D3-A5GU-06 12 111924602 111924602 G A ATXN2 Missense_Mutation p.P916L 0.30 probably_damaging(1) TCGA-D3-A5GU-06 12 111924603 111924603 G A ATXN2 Missense_Mutation p.P916S 0.30 probably_damaging(1) TCGA-D3-A5GU-06 12 11286736 11286736 G A TAS2R30 Silent p.V36V 0.46 TCGA-D3-A5GU-06 12 113303249 113303249 G A RPH3A Silent p.R87R 0.16 TCGA-D3-A5GU-06 12 117187910 117187910 C T RNFT2 Silent p.F116F 0.50 TCGA-D3-A5GU-06 12 117273830 117273830 G A RNFT2 Silent p.Q366Q 0.43 TCGA-D3-A5GU-06 12 117665402 117665402 G A NOS1 Silent p.T1184T 0.48 TCGA-D3-A5GU-06 12 117691527 117691527 G A NOS1 Missense_Mutation p.S889F 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GU-06 12 120582578 120582578 G A GCN1L1 Silent p.I1739I 0.44 TCGA-D3-A5GU-06 12 121698278 121698278 T A CAMKK2 Intron 0.50 TCGA-D3-A5GU-06 12 121747651 121747651 G A ANAPC5 Missense_Mutation p.P637S 0.41 tolerated(0.14) benign(0.063) TCGA-D3-A5GU-06 12 123798214 123798214 G A SBNO1 Missense_Mutation p.S1058F 0.33 deleterious(0.03) possibly_damaging(0.905) TCGA-D3-A5GU-06 12 12815398 12815398 C T GPR19 5'UTR 0.48 TCGA-D3-A5GU-06 12 132237880 132237880 G A SFSWAP Missense_Mutation p.G432R 0.48 tolerated(0.15) possibly_damaging(0.851) TCGA-D3-A5GU-06 12 132237881 132237881 G A SFSWAP Missense_Mutation p.G432E 0.47 tolerated(0.29) possibly_damaging(0.765) TCGA-D3-A5GU-06 12 133241935 133241935 G A POLE Silent p.A807A 0.45 TCGA-D3-A5GU-06 12 133398801 133398801 G A GOLGA3 5'UTR 0.33 TCGA-D3-A5GU-06 12 14773998 14773998 C T GUCY2C Nonsense_Mutation p.W918* 0.40 TCGA-D3-A5GU-06 12 14774038 14774038 C T GUCY2C Missense_Mutation p.G905E 0.51 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A5GU-06 12 18524130 18524130 G A PIK3C2G Missense_Mutation p.E548K 0.52 deleterious(0.04) benign(0.213) TCGA-D3-A5GU-06 12 23737499 23737499 T C SOX5 Intron 0.50 TCGA-D3-A5GU-06 12 32480779 32480779 G A BICD1 Missense_Mutation p.E464K 0.34 tolerated(0.05) benign(0.241) TCGA-D3-A5GU-06 12 32786516 32786516 C T FGD4 Nonsense_Mutation p.Q599* 0.38 TCGA-D3-A5GU-06 12 3649838 3649838 C T PRMT8 Missense_Mutation p.H48Y 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.487) TCGA-D3-A5GU-06 12 41949535 41949535 G A PDZRN4 Silent p.R446R 0.40 TCGA-D3-A5GU-06 12 46243472 46243472 C T ARID2 Nonsense_Mutation p.Q609* 0.35 TCGA-D3-A5GU-06 12 47629324 47629324 C T PCED1B Silent p.L160L 0.40 TCGA-D3-A5GU-06 12 47629874 47629874 C T PCED1B Missense_Mutation p.S343F 0.37 tolerated(0.16) possibly_damaging(0.675) TCGA-D3-A5GU-06 12 48866728 48866728 A G ANP32D Missense_Mutation p.N94S 0.44 deleterious(0.05) benign(0.114) TCGA-D3-A5GU-06 12 49176422 49176422 C T ADCY6 Missense_Mutation p.G266S 0.37 tolerated(0.3) possibly_damaging(0.529) TCGA-D3-A5GU-06 12 50452658 50452658 G A ASIC1 Missense_Mutation p.E37K 0.40 tolerated(0.12) benign(0.021) TCGA-D3-A5GU-06 12 51319047 51319047 G A METTL7A Missense_Mutation p.E76K 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GU-06 12 5153723 5153723 C T KCNA5 Missense_Mutation p.T137I 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 12 52908759 52908759 G A KRT5 Silent p.T580T 0.47 TCGA-D3-A5GU-06 12 53468952 53468952 G A SPRYD3 Missense_Mutation p.P100S 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A5GU-06 12 54975866 54975866 C T PPP1R1A Silent p.E99E 0.35 TCGA-D3-A5GU-06 12 55846815 55846815 C T OR6C2 Missense_Mutation p.S273L 0.27 tolerated_low_confidence(0.05) benign(0.1) TCGA-D3-A5GU-06 12 55863875 55863875 C T OR6C70 Silent p.T16T 0.36 TCGA-D3-A5GU-06 12 56359832 56359832 G A PMEL 5'Flank 0.46 TCGA-D3-A5GU-06 12 56721154 56721154 G A PAN2 Nonsense_Mutation p.Q305* 0.35 TCGA-D3-A5GU-06 12 57111603 57111603 G A NACA Intron 0.38 TCGA-D3-A5GU-06 12 57598417 57598417 C T LRP1 Silent p.F3693F 0.13 TCGA-D3-A5GU-06 12 57600317 57600317 C T LRP1 Silent p.G3884G 0.41 TCGA-D3-A5GU-06 12 57600318 57600318 C T LRP1 Missense_Mutation p.H3885Y 0.40 benign(0.055) TCGA-D3-A5GU-06 12 58025075 58025075 G A B4GALNT1 Silent p.V97V 0.41 TCGA-D3-A5GU-06 12 63541189 63541189 C T AVPR1A Missense_Mutation p.D403N 0.44 deleterious(0.02) benign(0.084) TCGA-D3-A5GU-06 12 68647128 68647128 G A IL22 Missense_Mutation p.A34V 0.25 tolerated(0.54) benign(0.002) TCGA-D3-A5GU-06 12 69050130 69050130 A G RAP1B Silent p.E123E 0.40 TCGA-D3-A5GU-06 12 7653847 7653847 C T CD163 Missense_Mutation p.M115I 0.43 tolerated(0.25) benign(0.088) TCGA-D3-A5GU-06 12 79679643 79679643 G A SYT1 Silent p.K81K 0.47 TCGA-D3-A5GU-06 12 9348941 9348941 G A PZP Silent p.I359I 0.36 TCGA-D3-A5GU-06 12 97137530 97137530 G A C12orf55 Missense_Mutation p.G2467R 0.28 tolerated(0.42) benign(0.002) TCGA-D3-A5GU-06 13 20012290 20012290 C T TPTE2 Missense_Mutation p.R326K 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A5GU-06 13 31711578 31711578 G A HSPH1 Silent p.G818G 0.42 TCGA-D3-A5GU-06 13 31903923 31903923 C A B3GALTL 3'UTR 0.56 TCGA-D3-A5GU-06 13 33017747 33017747 G A N4BP2L2 Silent p.T309T 0.54 TCGA-D3-A5GU-06 13 33634819 33634819 G A KL Missense_Mutation p.D535N 0.35 deleterious(0.04) benign(0.223) TCGA-D3-A5GU-06 13 37453819 37453819 G A SMAD9 Missense_Mutation p.S3F 0.39 deleterious_low_confidence(0) benign(0.372) TCGA-D3-A5GU-06 13 38213255 38213255 C T TRPC4 Silent p.R716R 0.19 TCGA-D3-A5GU-06 13 44455284 44455284 G A LACC1 Missense_Mutation p.D55N 0.14 tolerated(0.75) benign(0.001) TCGA-D3-A5GU-06 13 77672272 77672272 A G MYCBP2 Missense_Mutation p.F2968S 0.36 benign(0.013) TCGA-D3-A5GU-06 13 77730270 77730270 G A MYCBP2 Missense_Mutation p.R2242C 0.33 probably_damaging(0.984) TCGA-D3-A5GU-06 13 77786261 77786261 G A MYCBP2 Missense_Mutation p.P993L 0.52 probably_damaging(0.942) TCGA-D3-A5GU-06 13 78475260 78475260 A G EDNRB Missense_Mutation p.L385P 0.42 deleterious(0) probably_damaging(0.937) TCGA-D3-A5GU-06 13 80095068 80095068 C T NDFIP2 Missense_Mutation p.P149S 0.36 deleterious(0.02) probably_damaging(0.937) TCGA-D3-A5GU-06 13 93518535 93518535 G A GPC5 Nonsense_Mutation p.W521* 0.30 TCGA-D3-A5GU-06 13 96536859 96536859 T C UGGT2 Silent p.K1038K 0.50 TCGA-D3-A5GU-06 13 98896812 98896812 C T FARP1 Intron 0.34 TCGA-D3-A5GU-06 13 99171532 99171532 G A STK24 Missense_Mutation p.P92S 0.41 tolerated(0.12) benign(0.174) TCGA-D3-A5GU-06 14 100331934 100331934 C T EML1 Missense_Mutation p.P112S 0.18 tolerated(0.35) probably_damaging(0.999) TCGA-D3-A5GU-06 14 100331935 100331935 C T EML1 Missense_Mutation p.P112L 0.18 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GU-06 14 102028607 102028607 C T DIO3 Silent p.F258F 0.49 TCGA-D3-A5GU-06 14 105420580 105420580 C T AHNAK2 Missense_Mutation p.R403K 0.52 benign(0.319) TCGA-D3-A5GU-06 14 106757935 106757935 C T IGHV2-26 Silent p.K24K 0.23 TCGA-D3-A5GU-06 14 21238600 21238600 G A EDDM3B Silent p.Q97Q 0.23 TCGA-D3-A5GU-06 14 23058125 23058125 G A DAD1 5'UTR 0.31 TCGA-D3-A5GU-06 14 23346766 23346766 C T LRP10 3'UTR 0.41 TCGA-D3-A5GU-06 14 23524557 23524557 G A CDH24 Silent p.H69H 0.13 TCGA-D3-A5GU-06 14 23778131 23778131 T A BCL2L2 Missense_Mutation p.L180Q 0.47 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A5GU-06 14 23828659 23828659 C T EFS Missense_Mutation p.R343H 0.24 tolerated(0.58) benign(0.005) TCGA-D3-A5GU-06 14 31855777 31855777 G A HEATR5A Silent p.A105A 0.41 TCGA-D3-A5GU-06 14 50085442 50085442 G A RPL36AL 3'UTR 0.32 TCGA-D3-A5GU-06 14 50085443 50085443 G A RPL36AL 3'UTR 0.32 TCGA-D3-A5GU-06 14 50911881 50911881 A G MAP4K5 Missense_Mutation p.F406S 0.20 tolerated(0.42) benign(0.001) TCGA-D3-A5GU-06 14 55890921 55890921 C T TBPL2 Missense_Mutation p.R336Q 0.16 tolerated(0.06) benign(0.209) TCGA-D3-A5GU-06 14 56233097 56233097 G A RP11-813I20.2 Intron 0.36 TCGA-D3-A5GU-06 14 58953747 58953747 C T KIAA0586 Missense_Mutation p.P1109L 0.35 tolerated(0.05) benign(0.046) TCGA-D3-A5GU-06 14 64988363 64988363 C T ZBTB1 Silent p.S47S 0.28 TCGA-D3-A5GU-06 14 71067380 71067380 C T MED6 5'UTR 0.30 TCGA-D3-A5GU-06 14 92471455 92471455 G A TRIP11 Silent p.T955T 0.26 TCGA-D3-A5GU-06 14 92471456 92471456 G A TRIP11 Missense_Mutation p.T955I 0.26 tolerated(0.1) benign(0.102) TCGA-D3-A5GU-06 14 95597909 95597914 TGAGTA - DICER1 In_Frame_Del p.Y124_S125del 0.25 TCGA-D3-A5GU-06 15 101872132 101872132 G A PCSK6 Missense_Mutation p.P654S 0.18 tolerated(0.23) benign(0.012) TCGA-D3-A5GU-06 15 20645873 20645873 G C HERC2P3 RNA 0.25 TCGA-D3-A5GU-06 15 25456944 25456944 G A SNORD115-23 RNA 0.53 TCGA-D3-A5GU-06 15 27128380 27128380 G A GABRA5 Missense_Mutation p.M92I 0.58 deleterious(0.04) probably_damaging(0.939) TCGA-D3-A5GU-06 15 28413670 28413670 G A HERC2 Silent p.S3432S 0.20 TCGA-D3-A5GU-06 15 40327286 40327286 C T EIF2AK4 3'UTR 0.22 TCGA-D3-A5GU-06 15 40327287 40327287 C T EIF2AK4 3'UTR 0.21 TCGA-D3-A5GU-06 15 40627286 40627286 C T C15orf52 3'UTR 0.26 TCGA-D3-A5GU-06 15 40662017 40662017 C T DISP2 Missense_Mutation p.S1235F 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 15 42105202 42105202 G A MAPKBP1 Missense_Mutation p.R241K 0.48 tolerated(0.08) benign(0.109) TCGA-D3-A5GU-06 15 44925831 44925831 C T SPG11 Missense_Mutation p.G536E 0.35 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GU-06 15 45386800 45386800 G A DUOX2 Silent p.F1495F 0.36 TCGA-D3-A5GU-06 15 58004378 58004378 A T POLR2M Missense_Mutation p.N319Y 0.26 tolerated(0.06) possibly_damaging(0.894) TCGA-D3-A5GU-06 15 62945423 62945423 G C TLN2 Missense_Mutation p.G143R 0.28 tolerated(0.16) benign(0.016) TCGA-D3-A5GU-06 15 64263739 64263739 G A DAPK2 Silent p.F112F 0.53 TCGA-D3-A5GU-06 15 64422134 64422134 C T SNX1 Missense_Mutation p.T276I 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 15 65257734 65257734 C T SPG21 Missense_Mutation p.R246Q 0.54 deleterious(0.04) possibly_damaging(0.851) TCGA-D3-A5GU-06 15 65411746 65411746 G A PDCD7 Silent p.A434A 0.39 TCGA-D3-A5GU-06 15 65411747 65411747 G A PDCD7 Missense_Mutation p.A434V 0.41 deleterious(0) probably_damaging(0.945) TCGA-D3-A5GU-06 15 65916421 65916421 G A SLC24A1 Translation_Start_Site p.M1? 0.43 benign(0.019) TCGA-D3-A5GU-06 15 66853527 66853527 G A LCTL Missense_Mutation p.R203W 0.28 tolerated(1) benign(0.004) TCGA-D3-A5GU-06 15 75114983 75114983 G A LMAN1L Missense_Mutation p.D378N 0.26 tolerated(0.1) benign(0.085) TCGA-D3-A5GU-06 15 75801321 75801321 G A PTPN9 Silent p.P192P 0.21 TCGA-D3-A5GU-06 15 75801322 75801322 G A PTPN9 Missense_Mutation p.P192L 0.21 deleterious(0.05) probably_damaging(0.967) TCGA-D3-A5GU-06 15 79060523 79060523 C G ADAMTS7 Missense_Mutation p.R866P 0.55 deleterious(0) probably_damaging(0.979) TCGA-D3-A5GU-06 15 79083116 79083116 G A ADAMTS7 Silent p.H308H 0.27 TCGA-D3-A5GU-06 15 85411370 85411370 C T ALPK3 Missense_Mutation p.P1803S 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GU-06 15 85411375 85411375 C T ALPK3 Silent p.A1804A 0.20 TCGA-D3-A5GU-06 15 90610492 90610492 G A ZNF710 Silent p.E41E 0.28 TCGA-D3-A5GU-06 15 99672948 99672948 C T SYNM Silent p.T1460T 0.23 TCGA-D3-A5GU-06 16 10575879 10575879 G T ATF7IP2 Missense_Mutation p.V608L 0.51 deleterious(0.02) probably_damaging(0.983) TCGA-D3-A5GU-06 16 10775953 10775953 C T TEKT5 Missense_Mutation p.E254K 0.26 tolerated(0.11) benign(0.041) TCGA-D3-A5GU-06 16 10995993 10995993 G A CIITA Missense_Mutation p.E194K 0.24 tolerated(0.27) benign(0.08) TCGA-D3-A5GU-06 16 15029079 15029079 G A NPIPA1 5'Flank 0.09 TCGA-D3-A5GU-06 16 15029080 15029080 G A NPIPA1 5'Flank 0.10 TCGA-D3-A5GU-06 16 1555462 1555462 A T TELO2 Missense_Mutation p.T632S 0.37 tolerated(0.55) benign(0) TCGA-D3-A5GU-06 16 15851693 15851693 G T MYH11 Silent p.I529I 0.24 TCGA-D3-A5GU-06 16 15851849 15851849 G A MYH11 Silent p.S477S 0.21 TCGA-D3-A5GU-06 16 1813681 1813681 G A MAPK8IP3 Missense_Mutation p.R640Q 0.37 deleterious(0.01) benign(0.443) TCGA-D3-A5GU-06 16 19547373 19547373 C T CCP110 Missense_Mutation p.P128S 0.47 tolerated(0.12) probably_damaging(0.996) TCGA-D3-A5GU-06 16 20497956 20497956 C T ACSM2A Nonsense_Mutation p.R564* 0.48 TCGA-D3-A5GU-06 16 2050213 2050213 G A ZNF598 Missense_Mutation p.P446L 0.20 probably_damaging(1) TCGA-D3-A5GU-06 16 2050214 2050214 G A ZNF598 Missense_Mutation p.P446S 0.20 probably_damaging(1) TCGA-D3-A5GU-06 16 20999068 20999068 C T DNAH3 Missense_Mutation p.D2277N 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 16 23390058 23390058 G C SCNN1B Missense_Mutation p.R479P 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A5GU-06 16 24358116 24358116 G A CACNG3 Silent p.Q91Q 0.46 TCGA-D3-A5GU-06 16 30581230 30581230 G A ZNF688 3'UTR 0.54 TCGA-D3-A5GU-06 16 30676364 30676364 A T FBRS Missense_Mutation p.K524N 0.20 probably_damaging(0.958) TCGA-D3-A5GU-06 16 31501463 31501463 G A SLC5A2 Silent p.E568E 0.22 TCGA-D3-A5GU-06 16 3486837 3486837 C T ZNF597 Missense_Mutation p.E288K 0.21 tolerated(1) benign(0.001) TCGA-D3-A5GU-06 16 3486838 3486838 C T ZNF597 Silent p.E287E 0.20 TCGA-D3-A5GU-06 16 4519332 4519332 G A NMRAL1 Nonsense_Mutation p.Q59* 0.19 TCGA-D3-A5GU-06 16 4519333 4519333 G T NMRAL1 Missense_Mutation p.D58E 0.19 deleterious(0.02) possibly_damaging(0.584) TCGA-D3-A5GU-06 16 46638351 46638351 G A SHCBP1 Nonsense_Mutation p.R238* 0.20 TCGA-D3-A5GU-06 16 4790283 4790283 C T C16orf71 Missense_Mutation p.L136F 0.21 tolerated(0.1) benign(0.002) TCGA-D3-A5GU-06 16 51173284 51173284 C T SALL1 Missense_Mutation p.R950K 0.52 tolerated(0.63) possibly_damaging(0.519) TCGA-D3-A5GU-06 16 55600715 55600715 G A CAPNS2 Missense_Mutation p.G16E 0.16 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A5GU-06 16 66436774 66436774 C T CDH5 Missense_Mutation p.A686V 0.29 tolerated(0.09) benign(0.262) TCGA-D3-A5GU-06 16 66770010 66770010 G A DYNC1LI2 Silent p.L223L 0.47 TCGA-D3-A5GU-06 16 67234605 67234605 C T ELMO3 Missense_Mutation p.P240S 0.29 deleterious(0.02) benign(0.087) TCGA-D3-A5GU-06 16 67268019 67268019 G A FHOD1 Silent p.I529I 0.53 TCGA-D3-A5GU-06 16 67644819 67644819 C T CTCF Silent p.R28R 0.25 TCGA-D3-A5GU-06 16 70557456 70557456 C T COG4 5'UTR 0.27 TCGA-D3-A5GU-06 16 70913340 70913340 T C HYDIN Missense_Mutation p.N3473D 0.25 benign(0.023) TCGA-D3-A5GU-06 16 71103194 71103194 G C HYDIN Silent p.R650R 0.26 TCGA-D3-A5GU-06 16 71418718 71418718 G A CALB2 Silent p.A202A 0.25 TCGA-D3-A5GU-06 16 83712043 83712043 C A CDH13 Missense_Mutation p.D552E 0.25 deleterious(0) possibly_damaging(0.654) TCGA-D3-A5GU-06 16 84270301 84270301 G A KCNG4 Intron 0.59 TCGA-D3-A5GU-06 16 86545077 86545077 C T FOXF1 Missense_Mutation p.S301F 0.12 deleterious(0.01) benign(0.359) TCGA-D3-A5GU-06 16 87432463 87432463 C T MAP1LC3B Missense_Mutation p.P28L 0.51 deleterious(0) possibly_damaging(0.879) TCGA-D3-A5GU-06 16 8866661 8866661 C T ABAT Missense_Mutation p.R281W 0.27 deleterious(0.01) possibly_damaging(0.818) TCGA-D3-A5GU-06 16 88744976 88744976 C T SNAI3 Silent p.R253R 0.57 TCGA-D3-A5GU-06 16 88744977 88744977 C T SNAI3 Missense_Mutation p.R253Q 0.59 deleterious(0) possibly_damaging(0.857) TCGA-D3-A5GU-06 17 10400668 10400668 C T MYH1 Silent p.K1489K 0.49 TCGA-D3-A5GU-06 17 10428305 10428305 C T MYH2 Silent p.R1580R 0.51 TCGA-D3-A5GU-06 17 11532833 11532833 G A DNAH9 Missense_Mutation p.E484K 0.31 benign(0.014) TCGA-D3-A5GU-06 17 16526804 16526804 G A ZNF624 Missense_Mutation p.H466Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GU-06 17 17034933 17034933 G A MPRIP Nonsense_Mutation p.W141* 0.44 TCGA-D3-A5GU-06 17 17034934 17034934 G T MPRIP Missense_Mutation p.W141C 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 17 18007134 18007134 C T DRG2 Silent p.L276L 0.10 TCGA-D3-A5GU-06 17 18022609 18022609 C T MYO15A Silent p.S165S 0.12 TCGA-D3-A5GU-06 17 18232117 18232117 C T SHMT1 Missense_Mutation p.E467K 0.42 tolerated(0.14) benign(0.001) TCGA-D3-A5GU-06 17 18874357 18874357 G A SLC5A10 Silent p.L224L 0.17 TCGA-D3-A5GU-06 17 19687173 19687173 C T ULK2 Missense_Mutation p.R766H 0.22 tolerated(0.08) benign(0.008) TCGA-D3-A5GU-06 17 21911017 21911017 G A RP11-744K17.9 RNA 0.70 TCGA-D3-A5GU-06 17 26902186 26902186 G A ALDOC Silent p.P93P 0.52 TCGA-D3-A5GU-06 17 27008961 27008961 C T SUPT6H Silent p.R520R 0.64 TCGA-D3-A5GU-06 17 27225737 27225737 G A DHRS13 Missense_Mutation p.H286Y 0.24 deleterious(0.04) benign(0.259) TCGA-D3-A5GU-06 17 29226322 29226322 G T TEFM Missense_Mutation p.F316L 0.33 tolerated(0.66) benign(0.004) TCGA-D3-A5GU-06 17 29556133 29556133 C T NF1 Silent p.L834L 0.31 TCGA-D3-A5GU-06 17 32953333 32953333 G A TMEM132E Silent p.K85K 0.56 TCGA-D3-A5GU-06 17 33348624 33348624 A T RFFL Silent p.S119S 0.38 TCGA-D3-A5GU-06 17 37187974 37187974 G C CTD-2206N4.2 5'Flank 0.18 TCGA-D3-A5GU-06 17 38061002 38061002 G A GSDMB 3'UTR 0.59 TCGA-D3-A5GU-06 17 38245701 38245701 G A THRA Intron 0.50 TCGA-D3-A5GU-06 17 39579051 39579051 G A KRT37 Silent p.S237S 0.11 TCGA-D3-A5GU-06 17 39670293 39670293 G A KRT15 Silent p.S451S 0.53 TCGA-D3-A5GU-06 17 40818364 40818364 C T TUBG2 Silent p.I340I 0.19 TCGA-D3-A5GU-06 17 40818365 40818365 C T TUBG2 Missense_Mutation p.R341W 0.19 deleterious(0) probably_damaging(0.991) TCGA-D3-A5GU-06 17 41131445 41131445 C T PTGES3L-AARSD1 Missense_Mutation p.G90R 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A5GU-06 17 42636301 42636301 C T FZD2 Silent p.F415F 0.26 TCGA-D3-A5GU-06 17 47118862 47118862 C T IGF2BP1 Missense_Mutation p.S314L 0.29 tolerated(0.07) benign(0.036) TCGA-D3-A5GU-06 17 4797555 4797555 C T MINK1 Silent p.P919P 0.23 TCGA-D3-A5GU-06 17 4925875 4925875 C T KIF1C Silent p.L833L 0.41 TCGA-D3-A5GU-06 17 4925876 4925876 C T KIF1C Missense_Mutation p.R834W 0.38 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-D3-A5GU-06 17 5238487 5238487 C T RABEP1 Missense_Mutation p.R126C 0.33 tolerated(0.21) benign(0.013) TCGA-D3-A5GU-06 17 57775142 57775142 C T PTRH2 Silent p.K66K 0.36 TCGA-D3-A5GU-06 17 59926562 59926562 G A BRIP1 Silent p.S145S 0.27 TCGA-D3-A5GU-06 17 62850585 62850585 G A LRRC37A3 3'UTR 0.59 TCGA-D3-A5GU-06 17 62892073 62892073 G A LRRC37A3 Missense_Mutation p.H435Y 0.38 tolerated(0.29) benign(0.043) TCGA-D3-A5GU-06 17 66872631 66872631 C T ABCA8 Missense_Mutation p.G1407E 0.42 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 17 72363819 72363819 C T GPR142 Missense_Mutation p.P59S 0.49 tolerated_low_confidence(0.3) benign(0) TCGA-D3-A5GU-06 17 72741160 72741160 C T RAB37 Missense_Mutation p.P173L 0.11 deleterious(0) possibly_damaging(0.895) TCGA-D3-A5GU-06 17 7476169 7476169 A T EIF4A1 Missense_Mutation p.S4C 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.497) TCGA-D3-A5GU-06 17 76046872 76046872 C T TNRC6C Missense_Mutation p.P577S 0.51 tolerated(0.7) benign(0.018) TCGA-D3-A5GU-06 17 76354553 76354553 G A SOCS3 Silent p.T208T 0.57 TCGA-D3-A5GU-06 17 76455200 76455200 G A DNAH17 Silent p.I3234I 0.55 TCGA-D3-A5GU-06 17 78899217 78899217 C T RPTOR Silent p.S952S 0.44 TCGA-D3-A5GU-06 17 79170756 79170756 C T AZI1 Missense_Mutation p.A583T 0.22 tolerated(0.33) benign(0.388) TCGA-D3-A5GU-06 17 79478025 79478025 G A ACTG1 Silent p.T304T 0.23 TCGA-D3-A5GU-06 17 79573705 79573727 GGAACATCTCACCTGTCTGTTCA - NPLOC4 Splice_Site p.X215_splice 0.35 TCGA-D3-A5GU-06 17 79982582 79982582 G A LRRC45 Missense_Mutation p.R99Q 0.17 tolerated(0.2) benign(0.015) TCGA-D3-A5GU-06 17 79982583 79982583 G A LRRC45 Silent p.R99R 0.17 TCGA-D3-A5GU-06 17 80038708 80038708 G A FASN Missense_Mutation p.P2229L 0.24 deleterious(0) possibly_damaging(0.745) TCGA-D3-A5GU-06 17 80038709 80038709 G A FASN Missense_Mutation p.P2229S 0.24 tolerated(0.09) benign(0.163) TCGA-D3-A5GU-06 17 80047254 80047254 C T FASN Missense_Mutation p.V658M 0.52 tolerated(0.14) possibly_damaging(0.631) TCGA-D3-A5GU-06 17 80320086 80320086 C T TEX19 Silent p.S20S 0.23 TCGA-D3-A5GU-06 17 80685001 80685001 G A FN3KRP Missense_Mutation p.G295E 0.26 tolerated(0.27) possibly_damaging(0.558) TCGA-D3-A5GU-06 18 14479183 14479183 C T CXADRP3 RNA 0.39 TCGA-D3-A5GU-06 18 28993563 28993563 T C DSG4 3'UTR 0.37 TCGA-D3-A5GU-06 18 29039067 29039067 G A DSG3 Silent p.L148L 0.30 TCGA-D3-A5GU-06 18 31319761 31319761 C A ASXL3 Missense_Mutation p.T798N 0.34 benign(0.032) TCGA-D3-A5GU-06 18 31325292 31325292 C T ASXL3 Missense_Mutation p.P1827L 0.34 probably_damaging(0.999) TCGA-D3-A5GU-06 18 34156470 34156470 G A FHOD3 Missense_Mutation p.E190K 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A5GU-06 18 42531897 42531897 G A SETBP1 Silent p.T864T 0.46 TCGA-D3-A5GU-06 18 42532439 42532439 G A SETBP1 Missense_Mutation p.G1045E 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 18 44559783 44559783 C T TCEB3B Missense_Mutation p.R618Q 0.32 tolerated(0.09) benign(0.017) TCGA-D3-A5GU-06 18 6093472 6093472 C T L3MBTL4 Missense_Mutation p.D419N 0.35 deleterious(0.01) benign(0.267) TCGA-D3-A5GU-06 18 67992581 67992581 C T SOCS6 Missense_Mutation p.P226L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 18 74701951 74701951 G A MBP Silent p.T81T 0.38 TCGA-D3-A5GU-06 18 76870457 76870457 G A ATP9B Silent p.R132R 0.21 TCGA-D3-A5GU-06 18 76870458 76870458 A T ATP9B Missense_Mutation p.N133Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 18 77119463 77119463 G A ATP9B Splice_Site p.X1004_splice 0.36 TCGA-D3-A5GU-06 18 77474697 77474697 C A CTDP1 Missense_Mutation p.P413T 0.50 tolerated(0.2) benign(0.071) TCGA-D3-A5GU-06 18 77474698 77474698 C T CTDP1 Missense_Mutation p.P413L 0.50 tolerated(0.17) benign(0.043) TCGA-D3-A5GU-06 18 77896636 77896636 G A ADNP2 Missense_Mutation p.D1114N 0.28 tolerated(0.48) possibly_damaging(0.849) TCGA-D3-A5GU-06 18 8378333 8378333 C T PTPRM Missense_Mutation p.S1178F 0.38 deleterious(0.02) possibly_damaging(0.891) TCGA-D3-A5GU-06 19 10397732 10397732 C T ICAM4 Missense_Mutation p.A15V 0.53 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A5GU-06 19 11558265 11558265 C T PRKCSH Silent p.T287T 0.17 TCGA-D3-A5GU-06 19 11943848 11943848 C T ZNF440 3'UTR 0.45 TCGA-D3-A5GU-06 19 12155702 12155702 C T ZNF878 Missense_Mutation p.E172K 0.39 tolerated(0.68) benign(0.008) TCGA-D3-A5GU-06 19 13428129 13428129 G A CACNA1A Missense_Mutation p.P451L 0.33 probably_damaging(0.958) TCGA-D3-A5GU-06 19 1438447 1438447 G A RPS15 Intron 0.22 TCGA-D3-A5GU-06 19 15302824 15302824 C T NOTCH3 Missense_Mutation p.G209E 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 19 15484042 15484042 C A AKAP8 Missense_Mutation p.D161Y 0.42 deleterious(0) possibly_damaging(0.854) TCGA-D3-A5GU-06 19 15655083 15655083 C T CYP4F22 Silent p.L377L 0.47 TCGA-D3-A5GU-06 19 17476401 17476401 C T PLVAP Silent p.R291R 0.47 TCGA-D3-A5GU-06 19 18322673 18322673 G A PDE4C Missense_Mutation p.R563C 0.34 deleterious(0) probably_damaging(0.992) TCGA-D3-A5GU-06 19 18322674 18322674 G A PDE4C Silent p.D562D 0.34 TCGA-D3-A5GU-06 19 18895154 18895154 C T COMP Missense_Mutation p.G645D 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 19 19339194 19339194 C T NCAN Missense_Mutation p.P922L 0.35 deleterious(0.01) benign(0.154) TCGA-D3-A5GU-06 19 20806909 20806909 G A ZNF626 3'UTR 0.45 TCGA-D3-A5GU-06 19 22171661 22171661 C T ZNF208 Nonsense_Mutation p.W18* 0.26 TCGA-D3-A5GU-06 19 33355544 33355544 C T SLC7A9 Missense_Mutation p.A76T 0.23 deleterious(0.03) possibly_damaging(0.804) TCGA-D3-A5GU-06 19 33647270 33647270 C T WDR88 Silent p.S273S 0.23 TCGA-D3-A5GU-06 19 34263618 34263618 C T CHST8 Missense_Mutation p.P309S 0.20 tolerated(0.07) benign(0.009) TCGA-D3-A5GU-06 19 34891000 34891000 C T GPI 3'UTR 0.45 TCGA-D3-A5GU-06 19 34891001 34891001 C T GPI 3'UTR 0.47 TCGA-D3-A5GU-06 19 36050055 36050055 C T ATP4A Silent p.K365K 0.50 TCGA-D3-A5GU-06 19 36054387 36054387 C T ATP4A Missense_Mutation p.G19S 0.52 tolerated(0.12) benign(0.077) TCGA-D3-A5GU-06 19 37619601 37619601 C A ZNF420 Missense_Mutation p.R570S 0.55 tolerated(0.47) possibly_damaging(0.717) TCGA-D3-A5GU-06 19 38702611 38702611 C T DPF1 3'UTR 0.67 TCGA-D3-A5GU-06 19 38702612 38702612 C T DPF1 3'UTR 0.67 TCGA-D3-A5GU-06 19 41008319 41008319 G A SPTBN4 Missense_Mutation p.E370K 0.60 deleterious(0) possibly_damaging(0.459) TCGA-D3-A5GU-06 19 41765843 41765843 C T AXL 3'UTR 0.25 TCGA-D3-A5GU-06 19 41765844 41765844 C T AXL 3'UTR 0.22 TCGA-D3-A5GU-06 19 42364908 42364908 C T RPS19 Missense_Mutation p.L22F 0.52 tolerated(0.06) possibly_damaging(0.682) TCGA-D3-A5GU-06 19 43349362 43349362 T C PSG10P RNA 0.55 TCGA-D3-A5GU-06 19 4442295 4442295 G A CHAF1A Silent p.E909E 0.48 TCGA-D3-A5GU-06 19 4447579 4447579 G A UBXN6 Missense_Mutation p.R195W 0.39 tolerated(0.15) probably_damaging(0.927) TCGA-D3-A5GU-06 19 4491823 4491824 - A HDGFRP2 Frame_Shift_Ins p.K227Efs*20 0.29 TCGA-D3-A5GU-06 19 4491833 4491833 G T HDGFRP2 Splice_Site p.X226_splice 0.36 TCGA-D3-A5GU-06 19 45211155 45211155 C T CEACAM16 Silent p.I321I 0.27 TCGA-D3-A5GU-06 19 4670198 4670198 G A C19orf10 Missense_Mutation p.S50F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GU-06 19 47983120 47983120 C T KPTN Missense_Mutation p.E263K 0.38 tolerated(0.47) benign(0.075) TCGA-D3-A5GU-06 19 4891231 4891231 C T ARRDC5 Missense_Mutation p.G286S 0.39 tolerated(0.39) benign(0.006) TCGA-D3-A5GU-06 19 48945210 48945210 G T GRIN2D Missense_Mutation p.D813Y 0.18 deleterious(0) probably_damaging(0.953) TCGA-D3-A5GU-06 19 4929251 4929251 C T MIR4747 5'Flank 0.34 TCGA-D3-A5GU-06 19 49657953 49657953 C T HRC Missense_Mutation p.G181E 0.51 tolerated(0.78) probably_damaging(0.972) TCGA-D3-A5GU-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.32 TCGA-D3-A5GU-06 19 50365694 50365694 G A PNKP Silent p.F321F 0.29 TCGA-D3-A5GU-06 19 51009680 51009680 G A JOSD2 Missense_Mutation p.S141F 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 19 51132559 51132559 C T SYT3 Missense_Mutation p.G425S 0.11 deleterious(0.03) possibly_damaging(0.613) TCGA-D3-A5GU-06 19 51165125 51165125 C T SHANK1 3'UTR 0.20 TCGA-D3-A5GU-06 19 51165126 51165126 C T SHANK1 3'UTR 0.20 TCGA-D3-A5GU-06 19 51410300 51410300 C T KLK4 Missense_Mutation p.G219S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 19 53302212 53302212 C T ZNF28 3'UTR 0.41 TCGA-D3-A5GU-06 19 53612595 53612595 G A ZNF415 Nonsense_Mutation p.Q235* 0.51 TCGA-D3-A5GU-06 19 54313123 54313123 C T NLRP12 Missense_Mutation p.S597N 0.26 tolerated(0.16) benign(0.01) TCGA-D3-A5GU-06 19 54658970 54658970 C T LENG1 3'UTR 0.31 TCGA-D3-A5GU-06 19 54756398 54756398 G A LILRB5 Missense_Mutation p.P497S 0.43 tolerated(0.08) possibly_damaging(0.84) TCGA-D3-A5GU-06 19 54965730 54965730 C T LENG8 Missense_Mutation p.P183L 0.52 tolerated(0.06) benign(0.164) TCGA-D3-A5GU-06 19 55085279 55085279 C G LILRA2 Intron 0.52 TCGA-D3-A5GU-06 19 55147174 55147174 C T AC009892.10 3'UTR 0.62 TCGA-D3-A5GU-06 19 55175258 55175258 C T LILRB4 Silent p.I39I 0.32 TCGA-D3-A5GU-06 19 55494041 55494041 G A NLRP2 Silent p.V325V 0.24 TCGA-D3-A5GU-06 19 56244370 56244370 C T NLRP9 Missense_Mutation p.G276E 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A5GU-06 19 56467228 56467228 C T NLRP8 Missense_Mutation p.P602S 0.35 tolerated(1) benign(0.419) TCGA-D3-A5GU-06 19 56467229 56467229 C T NLRP8 Missense_Mutation p.P602L 0.35 tolerated(0.52) benign(0.003) TCGA-D3-A5GU-06 19 57327492 57327492 G A PEG3 Missense_Mutation p.S773L 0.52 tolerated(0.1) benign(0.065) TCGA-D3-A5GU-06 19 57641622 57641622 G A USP29 Missense_Mutation p.E527K 0.24 deleterious(0.03) benign(0.001) TCGA-D3-A5GU-06 19 58049099 58049099 G A ZNF549 Missense_Mutation p.G243R 0.56 tolerated(0.2) possibly_damaging(0.849) TCGA-D3-A5GU-06 19 58152436 58152436 C T ZNF211 Silent p.F259F 0.52 TCGA-D3-A5GU-06 19 58152437 58152437 C T ZNF211 Silent p.L260L 0.53 TCGA-D3-A5GU-06 19 58697121 58697121 G A ZNF274 Missense_Mutation p.E26K 0.55 deleterious(0.03) benign(0.429) TCGA-D3-A5GU-06 19 59058766 59058766 G A TRIM28 Missense_Mutation p.E204K 0.68 deleterious(0.03) benign(0.071) TCGA-D3-A5GU-06 19 6820742 6820742 C T VAV1 Silent p.F78F 0.36 TCGA-D3-A5GU-06 19 6825340 6825340 C T VAV1 Silent p.F250F 0.11 TCGA-D3-A5GU-06 19 9062982 9062982 C T MUC16 Missense_Mutation p.R8155K 0.47 unknown(0) TCGA-D3-A5GU-06 19 9072844 9072844 C T MUC16 Missense_Mutation p.E4868K 0.44 unknown(0) TCGA-D3-A5GU-06 19 9091430 9091430 G A MUC16 Missense_Mutation p.P129S 0.40 unknown(0) TCGA-D3-A5GU-06 19 9325456 9325456 C T OR7D4 Missense_Mutation p.D20N 0.42 tolerated(0.1) benign(0.022) TCGA-D3-A5GU-06 19 9874043 9874043 C T ZNF846 Silent p.Q19Q 0.38 TCGA-D3-A5GU-06 1 109200171 109200171 C T HENMT1 Missense_Mutation p.E18K 0.17 tolerated(0.06) benign(0.15) TCGA-D3-A5GU-06 1 111434035 111434035 G A CD53 Missense_Mutation p.G2D 0.47 deleterious(0) benign(0.319) TCGA-D3-A5GU-06 1 111964008 111964008 G A OVGP1 Missense_Mutation p.R265C 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 1 112106526 112106526 C T ADORA3 Missense_Mutation p.E11K 0.49 deleterious_low_confidence(0.04) possibly_damaging(0.497) TCGA-D3-A5GU-06 1 113140635 113140635 A T ST7L Missense_Mutation p.F194I 0.60 tolerated(0.07) possibly_damaging(0.465) TCGA-D3-A5GU-06 1 113657280 113657280 C T LRIG2 Missense_Mutation p.T771I 0.48 deleterious(0.01) possibly_damaging(0.566) TCGA-D3-A5GU-06 1 117635456 117635456 C T TTF2 Missense_Mutation p.S970F 0.23 deleterious(0.01) possibly_damaging(0.62) TCGA-D3-A5GU-06 1 117635457 117635457 C T TTF2 Silent p.S970S 0.24 TCGA-D3-A5GU-06 1 117654930 117654930 G A TRIM45 Silent p.L580L 0.59 TCGA-D3-A5GU-06 1 118008992 118008992 C T MAN1A2 Missense_Mutation p.R371C 0.48 deleterious(0.03) benign(0.016) TCGA-D3-A5GU-06 1 118165472 118165472 G A FAM46C 5'UTR 0.34 TCGA-D3-A5GU-06 1 118166324 118166324 C T FAM46C Silent p.F278F 0.31 TCGA-D3-A5GU-06 1 120437028 120437028 G A ADAM30 Silent p.C644C 0.20 TCGA-D3-A5GU-06 1 145533427 145533427 C T ITGA10 Missense_Mutation p.S437F 0.26 deleterious(0) probably_damaging(0.953) TCGA-D3-A5GU-06 1 146399624 146399624 C T NBPF12 Missense_Mutation p.P188L 0.30 possibly_damaging(0.856) TCGA-D3-A5GU-06 1 147091084 147091084 C T BCL9 Missense_Mutation p.P375S 0.33 tolerated(0.12) probably_damaging(0.996) TCGA-D3-A5GU-06 1 148341935 148341935 T A NBPF20 Missense_Mutation p.N213I 0.24 possibly_damaging(0.865) TCGA-D3-A5GU-06 1 149902532 149902532 G A MTMR11 Intron 0.43 TCGA-D3-A5GU-06 1 151259684 151259684 C T ZNF687 Missense_Mutation p.S306F 0.48 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GU-06 1 152187520 152187520 G A HRNR Silent p.S2195S 0.12 TCGA-D3-A5GU-06 1 152552305 152552305 G A LCE3D Silent p.G36G 0.36 TCGA-D3-A5GU-06 1 153043153 153043153 G A SPRR2B Missense_Mutation p.P55S 0.10 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GU-06 1 153309739 153309739 C T PGLYRP4 Silent p.G287G 0.55 TCGA-D3-A5GU-06 1 153580059 153580059 C T S100A16 Missense_Mutation p.G88D 0.34 tolerated(0.14) benign(0.062) TCGA-D3-A5GU-06 1 153748254 153748254 C T SLC27A3 Missense_Mutation p.S141L 0.15 tolerated(0.1) benign(0.001) TCGA-D3-A5GU-06 1 154129936 154129936 C T NUP210L 5'Flank 0.50 TCGA-D3-A5GU-06 1 155003021 155003021 G A DCST2 Silent p.S302S 0.14 TCGA-D3-A5GU-06 1 155003022 155003022 G A DCST2 Missense_Mutation p.S302F 0.14 deleterious(0) benign(0.071) TCGA-D3-A5GU-06 1 15545933 15545933 G T TMEM51 Silent p.P152P 0.20 TCGA-D3-A5GU-06 1 156702139 156702139 C T RRNAD1 Silent p.T101T 0.08 TCGA-D3-A5GU-06 1 156702140 156702140 C T RRNAD1 Missense_Mutation p.R102W 0.08 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GU-06 1 156875116 156875116 G A PEAR1 Silent p.T69T 0.59 TCGA-D3-A5GU-06 1 158227293 158227293 G A CD1A Silent p.R322R 0.18 TCGA-D3-A5GU-06 1 158324356 158324356 G A CD1E Missense_Mutation p.G83E 0.31 deleterious(0) probably_damaging(0.989) TCGA-D3-A5GU-06 1 158389972 158389972 G A OR10K2 Missense_Mutation p.P229S 0.47 tolerated(0.18) benign(0.137) TCGA-D3-A5GU-06 1 158576463 158576463 C T OR10Z1 Missense_Mutation p.P79S 0.30 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 1 158584077 158584077 C T SPTA1 Missense_Mutation p.E2270K 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 1 158687237 158687237 C T OR6K3 Silent p.V223V 0.45 TCGA-D3-A5GU-06 1 159683514 159683514 G A CRP Missense_Mutation p.S159F 0.53 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GU-06 1 159898756 159898756 C T IGSF9 Missense_Mutation p.G808R 0.58 tolerated(0.45) benign(0.14) TCGA-D3-A5GU-06 1 160313076 160313076 G A NCSTN 5'UTR 0.35 TCGA-D3-A5GU-06 1 160765925 160765925 G A LY9 5'Flank 0.29 TCGA-D3-A5GU-06 1 16259066 16259067 GA - SPEN Frame_Shift_Del p.R2112Gfs*10 0.20 TCGA-D3-A5GU-06 1 164761920 164761920 C G PBX1 Missense_Mutation p.A152G 0.19 deleterious(0.03) possibly_damaging(0.547) TCGA-D3-A5GU-06 1 169511093 169511093 G A F5 Missense_Mutation p.P1079S 0.29 tolerated(0.3) benign(0.06) TCGA-D3-A5GU-06 1 169582290 169582290 C T SELP Missense_Mutation p.G218R 0.13 deleterious(0.03) probably_damaging(0.976) TCGA-D3-A5GU-06 1 170959004 170959004 G A MROH9 Silent p.K296K 0.26 TCGA-D3-A5GU-06 1 171086452 171086452 G A FMO3 Nonsense_Mutation p.W490* 0.25 TCGA-D3-A5GU-06 1 172001595 172001595 G A DNM3 Missense_Mutation p.D215N 0.45 tolerated(0.28) possibly_damaging(0.731) TCGA-D3-A5GU-06 1 175363020 175363020 G A TNR Missense_Mutation p.P418S 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 1 176738853 176738853 C T PAPPA2 Silent p.S1478S 0.48 TCGA-D3-A5GU-06 1 178483876 178483876 C T TEX35 Silent p.T44T 0.39 TCGA-D3-A5GU-06 1 180217586 180217586 C T LHX4 Silent p.F81F 0.54 TCGA-D3-A5GU-06 1 182551334 182551334 C A RNASEL Silent p.L542L 0.46 TCGA-D3-A5GU-06 1 186106059 186106059 C T HMCN1 Silent p.V4524V 0.36 TCGA-D3-A5GU-06 1 186113681 186113681 G A HMCN1 Silent p.A4704A 0.31 TCGA-D3-A5GU-06 1 186158758 186158758 C T HMCN1 Silent p.I5552I 0.12 TCGA-D3-A5GU-06 1 18692017 18692017 G T IGSF21 Missense_Mutation p.A281S 0.26 tolerated(1) benign(0.003) TCGA-D3-A5GU-06 1 18692018 18692018 C T IGSF21 Missense_Mutation p.A281V 0.26 tolerated(0.22) benign(0.022) TCGA-D3-A5GU-06 1 192780771 192780771 C T RGS2 3'UTR 0.41 TCGA-D3-A5GU-06 1 196794654 196794654 G A CFHR1 Missense_Mutation p.E36K 0.24 tolerated(0.16) benign(0.007) TCGA-D3-A5GU-06 1 196857313 196857313 G T CFHR4 Missense_Mutation p.L11F 0.37 tolerated(0.09) possibly_damaging(0.869) TCGA-D3-A5GU-06 1 197396684 197396684 C T CRB1 Silent p.V743V 0.55 TCGA-D3-A5GU-06 1 201858678 201858678 G A SHISA4 Missense_Mutation p.R60Q 0.23 deleterious(0) possibly_damaging(0.857) TCGA-D3-A5GU-06 1 202279450 202279450 C T LGR6 Missense_Mutation p.P511L 0.57 tolerated(0.2) benign(0.066) TCGA-D3-A5GU-06 1 204399051 204399051 C T PIK3C2B Missense_Mutation p.E1466K 0.16 deleterious(0.01) benign(0.006) TCGA-D3-A5GU-06 1 205308336 205308336 A T KLHDC8A Missense_Mutation p.F248Y 0.19 tolerated(0.24) benign(0.147) TCGA-D3-A5GU-06 1 206241550 206241550 G A C1orf186 Missense_Mutation p.S80F 0.31 tolerated(0.52) possibly_damaging(0.682) TCGA-D3-A5GU-06 1 207040734 207040734 C A IL20 Silent p.A128A 0.42 TCGA-D3-A5GU-06 1 209969723 209969723 G A IRF6 Missense_Mutation p.P117S 0.25 tolerated(0.09) benign(0.063) TCGA-D3-A5GU-06 1 2105451 2105451 C T PRKCZ Silent p.F467F 0.52 TCGA-D3-A5GU-06 1 210577891 210577891 C T HHAT Silent p.S185S 0.54 TCGA-D3-A5GU-06 1 214820055 214820055 G A CENPF Missense_Mutation p.R2381K 0.57 benign(0.013) TCGA-D3-A5GU-06 1 21546454 21546454 G A ECE1 Silent p.V769V 0.41 TCGA-D3-A5GU-06 1 22005802 22005802 G A USP48 3'UTR 0.19 TCGA-D3-A5GU-06 1 220162041 220162041 C T EPRS Missense_Mutation p.R889K 0.50 tolerated(1) benign(0) TCGA-D3-A5GU-06 1 220870097 220870097 C T C1orf115 3'UTR 0.31 TCGA-D3-A5GU-06 1 223284294 223284294 C T TLR5 Missense_Mutation p.D694N 0.46 deleterious(0.02) possibly_damaging(0.696) TCGA-D3-A5GU-06 1 228563450 228563450 G A OBSCN Missense_Mutation p.D8528N 0.65 probably_damaging(0.991) TCGA-D3-A5GU-06 1 22923920 22923920 T C EPHA8 Silent p.T627T 0.60 TCGA-D3-A5GU-06 1 233231576 233231576 G A PCNXL2 Silent p.L1291L 0.31 TCGA-D3-A5GU-06 1 233490615 233490615 C T MLK4 Missense_Mutation p.S390L 0.28 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GU-06 1 236730160 236730160 G A HEATR1 Missense_Mutation p.S1365F 0.36 deleterious(0.02) benign(0.013) TCGA-D3-A5GU-06 1 237995995 237995995 C T RYR2 3'UTR 0.52 TCGA-D3-A5GU-06 1 240969602 240969602 C T RGS7 Silent p.L369L 0.16 TCGA-D3-A5GU-06 1 247712378 247712378 G A GCSAML 5'Flank 0.28 TCGA-D3-A5GU-06 1 247712498 247712498 G A GCSAML Missense_Mutation p.G2E 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A5GU-06 1 248039459 248039459 C T TRIM58 Missense_Mutation p.P377S 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GU-06 1 248224825 248224825 C T OR2L3 Missense_Mutation p.T281I 0.42 deleterious(0.03) possibly_damaging(0.764) TCGA-D3-A5GU-06 1 248343668 248343668 C T OR2M2 Silent p.C127C 0.39 TCGA-D3-A5GU-06 1 248525486 248525486 G A OR2T4 Missense_Mutation p.G202R 0.46 tolerated(0.58) benign(0.006) TCGA-D3-A5GU-06 1 248756403 248756403 G A OR2T10 Missense_Mutation p.L223F 0.23 tolerated(0.15) benign(0.029) TCGA-D3-A5GU-06 1 25815749 25815749 G A TMEM57 Missense_Mutation p.E528K 0.25 deleterious(0.01) possibly_damaging(0.87) TCGA-D3-A5GU-06 1 27240412 27240412 C T NR0B2 Missense_Mutation p.G7E 0.52 tolerated(0.12) benign(0.038) TCGA-D3-A5GU-06 1 31821753 31821753 G A ZCCHC17 Missense_Mutation p.E166K 0.31 tolerated(0.24) benign(0.213) TCGA-D3-A5GU-06 1 31840267 31840267 C T FABP3 Silent p.R107R 0.48 TCGA-D3-A5GU-06 1 3649484 3649484 G A TP73 Silent p.E584E 0.36 TCGA-D3-A5GU-06 1 3649485 3649485 G A TP73 Missense_Mutation p.A585T 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GU-06 1 36602824 36602824 G A TRAPPC3 Missense_Mutation p.L175F 0.21 tolerated(0.18) benign(0.001) TCGA-D3-A5GU-06 1 36939112 36939112 C A CSF3R Missense_Mutation p.M199I 0.21 tolerated(0.08) benign(0.102) TCGA-D3-A5GU-06 1 37307454 37307454 C T GRIK3 Silent p.K471K 0.47 TCGA-D3-A5GU-06 1 40229306 40229306 C A BMP8B Intron 0.26 TCGA-D3-A5GU-06 1 40235421 40235421 A G OXCT2 Missense_Mutation p.F503L 0.39 deleterious(0.01) benign(0.136) TCGA-D3-A5GU-06 1 41236481 41236481 C T NFYC Missense_Mutation p.P349L 0.34 deleterious_low_confidence(0) benign(0.14) TCGA-D3-A5GU-06 1 41236482 41236482 C T NFYC Silent p.P349P 0.34 TCGA-D3-A5GU-06 1 44083488 44083488 C T PTPRF Missense_Mutation p.P1426L 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 1 46736440 46736440 C T RAD54L Silent p.L384L 0.24 TCGA-D3-A5GU-06 1 47130937 47130937 C A ATPAF1 Silent p.V145V 0.50 TCGA-D3-A5GU-06 1 52290999 52290999 G A NRD1 Silent p.S400S 0.20 TCGA-D3-A5GU-06 1 53453764 53453764 C T SCP2 Missense_Mutation p.P346L 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A5GU-06 1 60377919 60377919 C T CYP2J2 Silent p.R146R 0.24 TCGA-D3-A5GU-06 1 64608152 64608152 G A ROR1 Silent p.G331G 0.28 TCGA-D3-A5GU-06 1 66074537 66074537 C A LEPR Missense_Mutation p.Q569K 0.22 tolerated(0.29) benign(0.005) TCGA-D3-A5GU-06 1 66074538 66074538 A T LEPR Missense_Mutation p.Q569L 0.22 deleterious(0.01) benign(0.122) TCGA-D3-A5GU-06 1 70611553 70611553 G A LRRC40 Missense_Mutation p.P580L 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 1 70703161 70703161 C A SRSF11 Missense_Mutation p.S215Y 0.61 deleterious(0) unknown(0) TCGA-D3-A5GU-06 1 74506908 74506908 C T LRRIQ3 Missense_Mutation p.M569I 0.30 tolerated(0.18) benign(0.004) TCGA-D3-A5GU-06 1 74902181 74902181 G A TNNI3K Missense_Mutation p.D718N 0.50 tolerated(0.07) possibly_damaging(0.834) TCGA-D3-A5GU-06 1 7700508 7700508 G A CAMTA1 Missense_Mutation p.D187N 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A5GU-06 1 84878172 84878172 C T DNASE2B Nonsense_Mutation p.Q230* 0.54 TCGA-D3-A5GU-06 1 85573824 85573824 T A WDR63 Missense_Mutation p.F554L 0.25 tolerated(0.06) possibly_damaging(0.566) TCGA-D3-A5GU-06 1 89732143 89732143 G C GBP5 Missense_Mutation p.P252A 0.27 tolerated(0.46) benign(0.216) TCGA-D3-A5GU-06 1 90179755 90179755 A C LRRC8C Missense_Mutation p.K542N 0.55 deleterious(0.05) possibly_damaging(0.82) TCGA-D3-A5GU-06 20 10630945 10630945 C T JAG1 Missense_Mutation p.G395E 0.44 deleterious(0.02) probably_damaging(0.942) TCGA-D3-A5GU-06 20 10633225 10633225 G A JAG1 Silent p.G259G 0.41 TCGA-D3-A5GU-06 20 30232781 30232781 C T COX4I2 3'UTR 0.29 TCGA-D3-A5GU-06 20 30556418 30556418 C T XKR7 Missense_Mutation p.A147V 0.36 tolerated(0.13) benign(0.254) TCGA-D3-A5GU-06 20 30556419 30556419 C G XKR7 Silent p.A147A 0.38 TCGA-D3-A5GU-06 20 31671623 31671623 G A BPIFB4 Missense_Mutation p.G207D 0.46 tolerated(0.09) probably_damaging(1) TCGA-D3-A5GU-06 20 32371575 32371575 C T ZNF341 Missense_Mutation p.P579L 0.46 tolerated(0.13) benign(0.095) TCGA-D3-A5GU-06 20 34260690 34260690 G A NFS1 Missense_Mutation p.L433F 0.30 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GU-06 20 42088512 42088512 C T SRSF6 Missense_Mutation p.R120W 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 20 42680018 42680018 G A TOX2 Missense_Mutation p.A162T 0.49 tolerated(0.65) benign(0.306) TCGA-D3-A5GU-06 20 43058329 43058329 C T HNF4A 3'UTR 0.36 TCGA-D3-A5GU-06 20 43348738 43348738 G A WISP2 Silent p.R87R 0.25 TCGA-D3-A5GU-06 20 43607151 43607151 C T STK4 Missense_Mutation p.P62S 0.30 tolerated(0.08) possibly_damaging(0.543) TCGA-D3-A5GU-06 20 44003840 44003840 C T TP53TG5 Missense_Mutation p.D203N 0.38 tolerated(0.2) benign(0.015) TCGA-D3-A5GU-06 20 47269126 47269126 G A PREX1 Missense_Mutation p.S822L 0.41 tolerated(0.08) benign(0.04) TCGA-D3-A5GU-06 20 55204395 55204395 C T TFAP2C 5'UTR 0.33 TCGA-D3-A5GU-06 20 58587587 58587587 C T CDH26 Silent p.L767L 0.33 TCGA-D3-A5GU-06 20 61834758 61834758 G A YTHDF1 Silent p.P178P 0.43 TCGA-D3-A5GU-06 20 61834759 61834759 G A YTHDF1 Missense_Mutation p.P178L 0.43 deleterious(0.01) probably_damaging(0.926) TCGA-D3-A5GU-06 20 62194565 62194565 G A HELZ2 Silent p.F1870F 0.14 TCGA-D3-A5GU-06 20 62195261 62195261 G A HELZ2 Silent p.L1638L 0.46 TCGA-D3-A5GU-06 20 8352031 8352031 G C PLCB1 Missense_Mutation p.E60D 0.38 tolerated(0.11) benign(0.003) TCGA-D3-A5GU-06 20 8713958 8713958 C T PLCB1 Silent p.F654F 0.40 TCGA-D3-A5GU-06 21 10862924 10862924 G A IGHV1OR21-1 Missense_Mutation p.D74N 0.25 tolerated(0.97) benign(0.004) TCGA-D3-A5GU-06 21 32624359 32624359 G A TIAM1 Silent p.S370S 0.38 TCGA-D3-A5GU-06 21 34922671 34922671 C T SON Silent p.A378A 0.56 TCGA-D3-A5GU-06 21 34923408 34923408 C T SON Missense_Mutation p.P624L 0.30 possibly_damaging(0.713) TCGA-D3-A5GU-06 21 36079590 36079590 G A CLIC6 Missense_Mutation p.G463S 0.48 deleterious(0.01) possibly_damaging(0.826) TCGA-D3-A5GU-06 21 39493250 39493250 C T DSCR4 Missense_Mutation p.D34N 0.16 possibly_damaging(0.728) TCGA-D3-A5GU-06 21 42830677 42830677 C T MX1 Missense_Mutation p.P661S 0.15 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-D3-A5GU-06 21 42839804 42839804 C T TMPRSS2 Missense_Mutation p.G479R 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 21 47666560 47666560 C T MCM3AP Missense_Mutation p.E1511K 0.16 tolerated(0.21) benign(0.003) TCGA-D3-A5GU-06 22 20729881 20729881 G A USP41 Missense_Mutation p.P100L 0.30 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GU-06 22 20977101 20977101 G A SMPD4P1 RNA 0.16 TCGA-D3-A5GU-06 22 21383446 21383446 G A SLC7A4 Silent p.S602S 0.14 TCGA-D3-A5GU-06 22 24916417 24916417 C T UPB1 Missense_Mutation p.A285V 0.41 deleterious(0.04) possibly_damaging(0.461) TCGA-D3-A5GU-06 22 26422536 26422536 G C MYO18B Missense_Mutation p.R2199P 0.23 tolerated(0.12) benign(0.011) TCGA-D3-A5GU-06 22 29138077 29138077 C T HSCB 5'UTR 0.47 TCGA-D3-A5GU-06 22 31332500 31332500 G A MORC2 Nonsense_Mutation p.Q517* 0.54 TCGA-D3-A5GU-06 22 32194572 32194572 C T DEPDC5 Silent p.G292G 0.67 TCGA-D3-A5GU-06 22 37271838 37271838 G A NCF4 Nonsense_Mutation p.W257* 0.46 TCGA-D3-A5GU-06 22 37499554 37499554 C T TMPRSS6 Missense_Mutation p.R9K 0.50 deleterious_low_confidence(0) benign(0.011) TCGA-D3-A5GU-06 22 38878583 38878583 G A KDELR3 3'Flank 0.12 TCGA-D3-A5GU-06 22 39627829 39627829 G A PDGFB Missense_Mutation p.S85F 0.10 deleterious(0.01) benign(0.012) TCGA-D3-A5GU-06 22 40661423 40661423 G A TNRC6B Missense_Mutation p.G397R 0.38 deleterious(0) possibly_damaging(0.764) TCGA-D3-A5GU-06 22 40661424 40661424 G A TNRC6B Missense_Mutation p.G397E 0.36 tolerated(0.16) benign(0.065) TCGA-D3-A5GU-06 22 41616870 41616870 G A L3MBTL2 Missense_Mutation p.R284Q 0.26 tolerated(1) benign(0.001) TCGA-D3-A5GU-06 22 42276884 42276884 C T SREBF2 Silent p.F642F 0.48 TCGA-D3-A5GU-06 22 42276885 42276885 C T SREBF2 Nonsense_Mutation p.Q643* 0.47 TCGA-D3-A5GU-06 22 46655763 46655763 G A PKDREJ Missense_Mutation p.H1153Y 0.25 tolerated(0.5) benign(0.004) TCGA-D3-A5GU-06 2 102955425 102955425 C T IL1RL1 Missense_Mutation p.R64C 0.23 deleterious(0) probably_damaging(0.971) TCGA-D3-A5GU-06 2 102959622 102959622 A T IL1RL1 Missense_Mutation p.E270V 0.29 deleterious(0.02) benign(0.288) TCGA-D3-A5GU-06 2 112725720 112725720 C T MERTK Missense_Mutation p.P284L 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 2 121106889 121106889 C T INHBB Silent p.L221L 0.54 TCGA-D3-A5GU-06 2 121107494 121107494 C T INHBB 3'UTR 0.26 TCGA-D3-A5GU-06 2 1251212 1251212 T A SNTG2 Silent p.P334P 0.62 TCGA-D3-A5GU-06 2 125282009 125282009 G A CNTNAP5 Missense_Mutation p.G485E 0.75 tolerated(0.09) probably_damaging(1) TCGA-D3-A5GU-06 2 131520787 131520787 C T AMER3 Missense_Mutation p.S381F 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 2 138169263 138169263 T C THSD7B Missense_Mutation p.I927T 0.52 tolerated(0.54) benign(0.291) TCGA-D3-A5GU-06 2 138208565 138208565 C T THSD7B Missense_Mutation p.P1037L 0.23 deleterious(0.02) unknown(0) TCGA-D3-A5GU-06 2 157185862 157185862 G A NR4A2 Silent p.T279T 0.24 TCGA-D3-A5GU-06 2 157185863 157185863 G A NR4A2 Missense_Mutation p.T279I 0.24 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GU-06 2 158283904 158283904 G A CYTIP Silent p.L169L 0.30 TCGA-D3-A5GU-06 2 160176811 160176811 C T BAZ2B Missense_Mutation p.E2158K 0.57 possibly_damaging(0.802) TCGA-D3-A5GU-06 2 160708728 160708728 A C LY75-CD302 Missense_Mutation p.I956S 0.60 tolerated(0.09) probably_damaging(0.923) TCGA-D3-A5GU-06 2 165383642 165383642 C T GRB14 Missense_Mutation p.R162K 0.44 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GU-06 2 165476271 165476271 C T GRB14 Missense_Mutation p.E84K 0.49 deleterious(0) probably_damaging(0.983) TCGA-D3-A5GU-06 2 1658265 1658265 C T PXDN Missense_Mutation p.R618Q 0.61 tolerated(0.4) benign(0.044) TCGA-D3-A5GU-06 2 176844545 176844545 T C KIAA1715 Silent p.E103E 0.57 TCGA-D3-A5GU-06 2 177053942 177053942 C T HOXD1 Missense_Mutation p.A138V 0.75 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A5GU-06 2 179247813 179247813 C T OSBPL6 Missense_Mutation p.P587S 0.48 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A5GU-06 2 179404253 179404253 C T TTN Missense_Mutation p.D32847N 0.48 TCGA-D3-A5GU-06 2 179430602 179430602 A G TTN Missense_Mutation p.Y26753H 0.54 TCGA-D3-A5GU-06 2 179473600 179473600 C A TTN Missense_Mutation p.D17380Y 0.20 TCGA-D3-A5GU-06 2 179477796 179477796 G A TTN Missense_Mutation p.P16551L 0.29 TCGA-D3-A5GU-06 2 179585325 179585325 G A TTN Nonsense_Mutation p.Q7722* 0.63 TCGA-D3-A5GU-06 2 179611541 179611541 C T TTN Intron 0.25 TCGA-D3-A5GU-06 2 179614827 179614827 G A TTN Intron 0.13 TCGA-D3-A5GU-06 2 179640506 179640506 C T TTN Missense_Mutation p.E2029K 0.12 TCGA-D3-A5GU-06 2 179642634 179642634 C T TTN Missense_Mutation p.R1426K 0.49 TCGA-D3-A5GU-06 2 179733901 179733901 G A CCDC141 Silent p.I779I 0.30 TCGA-D3-A5GU-06 2 186673030 186673030 G A FSIP2 Missense_Mutation p.E6422K 0.63 possibly_damaging(0.817) TCGA-D3-A5GU-06 2 1893232 1893232 C T MYT1L Silent p.V765V 0.51 TCGA-D3-A5GU-06 2 1926436 1926436 C T MYT1L Missense_Mutation p.G369R 0.57 tolerated_low_confidence(0.13) benign(0.045) TCGA-D3-A5GU-06 2 20166597 20166597 C T WDR35 Nonsense_Mutation p.W361* 0.34 TCGA-D3-A5GU-06 2 201796153 201796153 A T ORC2 Missense_Mutation p.L276M 0.22 deleterious(0) probably_damaging(0.99) TCGA-D3-A5GU-06 2 204599511 204599511 G A CD28 Missense_Mutation p.R180K 0.44 tolerated(1) benign(0) TCGA-D3-A5GU-06 2 207412196 207412196 G A ADAM23 Missense_Mutation p.G255E 0.15 tolerated(1) benign(0.021) TCGA-D3-A5GU-06 2 210940298 210940298 G A KANSL1L Missense_Mutation p.P578L 0.15 deleterious(0.02) possibly_damaging(0.679) TCGA-D3-A5GU-06 2 21237416 21237416 T G APOB Missense_Mutation p.Q1249P 0.23 possibly_damaging(0.502) TCGA-D3-A5GU-06 2 215821417 215821417 C T ABCA12 Missense_Mutation p.G2068D 0.19 tolerated(0.06) possibly_damaging(0.853) TCGA-D3-A5GU-06 2 219028847 219028847 C T CXCR1 3'UTR 0.58 TCGA-D3-A5GU-06 2 219232161 219232161 G A C2orf62 Missense_Mutation p.E281K 0.49 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A5GU-06 2 224462262 224462262 G A SCG2 Missense_Mutation p.P580L 0.42 tolerated(0.11) benign(0.048) TCGA-D3-A5GU-06 2 227872033 227872033 C T COL4A4 3'UTR 0.24 TCGA-D3-A5GU-06 2 227907859 227907859 G A COL4A4 Nonsense_Mutation p.Q1111* 0.28 TCGA-D3-A5GU-06 2 227945256 227945256 C T COL4A4 Missense_Mutation p.G569E 0.35 probably_damaging(0.972) TCGA-D3-A5GU-06 2 228884716 228884716 C T SPHKAP Missense_Mutation p.R285Q 0.23 tolerated(0.48) benign(0.004) TCGA-D3-A5GU-06 2 231264863 231264863 G A SP140L Missense_Mutation p.E407K 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A5GU-06 2 235950642 235950642 C T SH3BP4 Missense_Mutation p.T410I 0.39 tolerated(0.08) benign(0.012) TCGA-D3-A5GU-06 2 237032677 237032677 G A AGAP1 Missense_Mutation p.E829K 0.59 deleterious(0.01) benign(0.132) TCGA-D3-A5GU-06 2 239147677 239147677 G A HES6 Missense_Mutation p.P156S 0.38 tolerated(0.24) benign(0.007) TCGA-D3-A5GU-06 2 242082465 242082465 A G PASK 5'UTR 0.27 TCGA-D3-A5GU-06 2 24239823 24239823 C T MFSD2B Silent p.F152F 0.22 TCGA-D3-A5GU-06 2 25803647 25803647 G A DTNB Missense_Mutation p.P218S 0.44 tolerated(0.42) probably_damaging(0.97) TCGA-D3-A5GU-06 2 27324077 27324077 C T CGREF1 3'UTR 0.56 TCGA-D3-A5GU-06 2 27324078 27324078 C T CGREF1 3'UTR 0.53 TCGA-D3-A5GU-06 2 27672393 27672393 G A IFT172 Silent p.F1399F 0.26 TCGA-D3-A5GU-06 2 28825788 28825788 G A PLB1 Missense_Mutation p.S925N 0.52 tolerated(0.3) possibly_damaging(0.781) TCGA-D3-A5GU-06 2 29519814 29519814 G A ALK Missense_Mutation p.A586V 0.27 deleterious(0.05) benign(0.049) TCGA-D3-A5GU-06 2 29754979 29754979 G A ALK Missense_Mutation p.S319F 0.49 deleterious(0.03) benign(0.42) TCGA-D3-A5GU-06 2 37873216 37873216 C T CDC42EP3 Nonsense_Mutation p.W172* 0.26 TCGA-D3-A5GU-06 2 51254796 51254796 C T NRXN1 Missense_Mutation p.D206N 0.33 tolerated(0.5) benign(0.248) TCGA-D3-A5GU-06 2 60687590 60687590 C T BCL11A Missense_Mutation p.M819I 0.22 deleterious(0) possibly_damaging(0.786) TCGA-D3-A5GU-06 2 62081062 62081062 G A FAM161A Silent p.L39L 0.54 TCGA-D3-A5GU-06 2 66691301 66691301 C T MEIS1 Missense_Mutation p.P231S 0.33 tolerated(0.07) possibly_damaging(0.792) TCGA-D3-A5GU-06 2 67631260 67631260 G A ETAA1 Silent p.E482E 0.19 TCGA-D3-A5GU-06 2 70890595 70890595 G A ADD2 Silent p.L715L 0.60 TCGA-D3-A5GU-06 2 73315293 73315293 C A RAB11FIP5 Nonsense_Mutation p.E485* 0.50 TCGA-D3-A5GU-06 2 88056443 88056443 C T PLGLB2 3'UTR 0.25 TCGA-D3-A5GU-06 2 88408030 88408030 C T SMYD1 Missense_Mutation p.P429L 0.44 deleterious(0.02) benign(0.434) TCGA-D3-A5GU-06 2 89544575 89544575 C T IGKV2-30 Splice_Site p.X17_splice 0.25 TCGA-D3-A5GU-06 3 113699529 113699529 T A KIAA1407 Nonsense_Mutation p.R759* 0.31 TCGA-D3-A5GU-06 3 11400057 11400057 C T ATG7 Missense_Mutation p.P484S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 3 119634959 119634959 C T GSK3B Silent p.R180R 0.41 TCGA-D3-A5GU-06 3 121351959 121351959 C T HCLS1 Silent p.R321R 0.35 TCGA-D3-A5GU-06 3 123419227 123419227 T C MYLK Missense_Mutation p.K1030E 0.31 deleterious(0.05) benign(0.093) TCGA-D3-A5GU-06 3 124732177 124732177 C T HEG1 Missense_Mutation p.R749K 0.35 tolerated(0.19) benign(0.011) TCGA-D3-A5GU-06 3 126142183 126142183 C A CCDC37 Silent p.I366I 0.47 TCGA-D3-A5GU-06 3 127317302 127317302 G A MCM2 5'UTR 0.31 TCGA-D3-A5GU-06 3 129156130 129156130 T C MBD4 Silent p.R119R 0.32 TCGA-D3-A5GU-06 3 130095398 130095398 G A COL6A5 Missense_Mutation p.R129K 0.29 tolerated(0.06) possibly_damaging(0.742) TCGA-D3-A5GU-06 3 132384834 132384834 C T UBA5 Missense_Mutation p.R72C 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GU-06 3 138291768 138291768 A T CEP70 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) benign(0.063) TCGA-D3-A5GU-06 3 142772593 142772593 G T U2SURP Missense_Mutation p.D911Y 0.25 tolerated(0.11) benign(0.446) TCGA-D3-A5GU-06 3 146307508 146307508 C T PLSCR5 Missense_Mutation p.G237R 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A5GU-06 3 149220486 149220486 C T TM4SF4 3'UTR 0.20 TCGA-D3-A5GU-06 3 156395966 156395966 G A TIPARP Silent p.Q160Q 0.33 TCGA-D3-A5GU-06 3 160253349 160253349 G A KPNA4 Missense_Mutation p.A80V 0.31 tolerated(1) benign(0.314) TCGA-D3-A5GU-06 3 160803733 160803733 G A B3GALNT1 Silent p.V270V 0.31 TCGA-D3-A5GU-06 3 164727088 164727088 C T SI Missense_Mutation p.M1386I 0.39 tolerated(0.28) possibly_damaging(0.507) TCGA-D3-A5GU-06 3 167182999 167182999 G A SERPINI2 Silent p.L287L 0.29 TCGA-D3-A5GU-06 3 169642870 169642870 C T SAMD7 Missense_Mutation p.S79F 0.18 deleterious(0.01) probably_damaging(0.915) TCGA-D3-A5GU-06 3 170150585 170150585 G A CLDN11 3'UTR 0.23 TCGA-D3-A5GU-06 3 178560683 178560683 C T KCNMB2 Silent p.Y222Y 0.22 TCGA-D3-A5GU-06 3 182591616 182591616 C T ATP11B Nonsense_Mutation p.R689* 0.45 TCGA-D3-A5GU-06 3 194158092 194158092 G A ATP13A3 Silent p.A649A 0.35 TCGA-D3-A5GU-06 3 195009937 195009937 C T ACAP2 Missense_Mutation p.R696Q 0.25 deleterious(0) probably_damaging(0.955) TCGA-D3-A5GU-06 3 195475900 195475900 C T MUC4 Missense_Mutation p.D5303N 0.35 benign(0.141) TCGA-D3-A5GU-06 3 21462893 21462893 C T ZNF385D Missense_Mutation p.R334Q 0.35 tolerated(0.37) possibly_damaging(0.885) TCGA-D3-A5GU-06 3 25542722 25542722 G A RARB Missense_Mutation p.R119Q 0.26 deleterious(0.04) possibly_damaging(0.673) TCGA-D3-A5GU-06 3 28562503 28562503 T G ZCWPW2 Missense_Mutation p.L269V 0.22 deleterious(0.04) benign(0.099) TCGA-D3-A5GU-06 3 29938927 29938927 C T RBMS3 Silent p.I283I 0.36 TCGA-D3-A5GU-06 3 3076356 3076356 C T CNTN4 Silent p.I608I 0.31 TCGA-D3-A5GU-06 3 30885737 30885737 C T GADL1 Missense_Mutation p.E251K 0.30 deleterious(0.02) benign(0.035) TCGA-D3-A5GU-06 3 32409437 32409437 C T CMTM8 Missense_Mutation p.P132L 0.43 tolerated(0.15) benign(0.061) TCGA-D3-A5GU-06 3 38354590 38354590 C T SLC22A14 Missense_Mutation p.P349S 0.80 deleterious(0.04) possibly_damaging(0.9) TCGA-D3-A5GU-06 3 38354591 38354591 C T SLC22A14 Missense_Mutation p.P349L 0.80 deleterious(0) probably_damaging(0.995) TCGA-D3-A5GU-06 3 38627416 38627416 G A SCN5A Silent p.F851F 0.29 TCGA-D3-A5GU-06 3 391158 391158 G A CHL1 Missense_Mutation p.G322E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 3 39172318 39172318 G A TTC21A Missense_Mutation p.E823K 0.45 tolerated(0.23) benign(0.41) TCGA-D3-A5GU-06 3 39227900 39227900 G A XIRP1 Nonsense_Mutation p.Q1013* 0.30 TCGA-D3-A5GU-06 3 40251481 40251481 C T MYRIP Missense_Mutation p.S601L 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 3 42954728 42954728 C T ZNF662 Intron 0.50 TCGA-D3-A5GU-06 3 42954729 42954729 C T ZNF662 Intron 0.50 TCGA-D3-A5GU-06 3 46063013 46063013 G A XCR1 Missense_Mutation p.L143F 0.32 tolerated(0.7) benign(0.086) TCGA-D3-A5GU-06 3 47288931 47288931 C T KIF9 Missense_Mutation p.E389K 0.43 deleterious(0.01) possibly_damaging(0.616) TCGA-D3-A5GU-06 3 48423235 48423235 C T FBXW12 Missense_Mutation p.P344L 0.43 deleterious(0.05) probably_damaging(0.981) TCGA-D3-A5GU-06 3 48455200 48455200 G A PLXNB1 Silent p.L1472L 0.33 TCGA-D3-A5GU-06 3 48626196 48626196 G A COL7A1 Silent p.L822L 0.23 TCGA-D3-A5GU-06 3 49065152 49065152 G A IMPDH2 Silent p.F174F 0.33 TCGA-D3-A5GU-06 3 50608503 50608503 C T HEMK1 5'UTR 0.28 TCGA-D3-A5GU-06 3 51196695 51196695 G A DOCK3 Missense_Mutation p.M283I 0.23 deleterious(0.01) benign(0.013) TCGA-D3-A5GU-06 3 51994626 51994626 G A PCBP4 Silent p.S57S 0.29 TCGA-D3-A5GU-06 3 52417987 52417987 C T DNAH1 Silent p.A2754A 0.26 TCGA-D3-A5GU-06 3 52441477 52441477 C T BAP1 Splice_Site p.X126_splice 0.33 TCGA-D3-A5GU-06 3 52514214 52514214 C T NISCH Silent p.S477S 0.28 TCGA-D3-A5GU-06 3 52558482 52558482 G T STAB1 3'UTR 0.37 TCGA-D3-A5GU-06 3 52558484 52558484 C A STAB1 3'UTR 0.36 TCGA-D3-A5GU-06 3 56468998 56468998 C T ERC2 Missense_Mutation p.G13D 0.26 deleterious(0.01) possibly_damaging(0.476) TCGA-D3-A5GU-06 3 58094970 58094970 C T FLNB Missense_Mutation p.S707L 0.31 tolerated(0.38) benign(0.141) TCGA-D3-A5GU-06 3 9754472 9754472 G A CPNE9 Missense_Mutation p.D169N 0.28 deleterious(0.01) benign(0.198) TCGA-D3-A5GU-06 3 98520451 98520451 G A DCBLD2 Silent p.D571D 0.42 TCGA-D3-A5GU-06 3 99514574 99514574 G A COL8A1 Missense_Mutation p.G610E 0.39 tolerated(1) benign(0.092) TCGA-D3-A5GU-06 4 100137370 100137370 G A ADH6 Missense_Mutation p.S23F 0.21 deleterious(0.02) probably_damaging(0.919) TCGA-D3-A5GU-06 4 100235009 100235009 G A ADH1B Missense_Mutation p.S266L 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 4 106307755 106307755 G A PPA2 Missense_Mutation p.T303I 0.45 deleterious(0) possibly_damaging(0.611) TCGA-D3-A5GU-06 4 113353198 113353198 C T ALPK1 Missense_Mutation p.S832F 0.47 tolerated(0.43) benign(0.234) TCGA-D3-A5GU-06 4 123372900 123372900 T C IL2 3'UTR 0.48 TCGA-D3-A5GU-06 4 126329734 126329734 G A FAT4 Missense_Mutation p.R1902Q 0.16 probably_damaging(0.975) TCGA-D3-A5GU-06 4 1332303 1332303 C T MAEA Silent p.A331A 0.35 TCGA-D3-A5GU-06 4 145061887 145061887 C T GYPA 5'UTR 0.37 TCGA-D3-A5GU-06 4 148457138 148457138 G A EDNRA Missense_Mutation p.R286K 0.39 tolerated(0.67) benign(0.34) TCGA-D3-A5GU-06 4 151827028 151827028 G A LRBA Missense_Mutation p.L573F 0.46 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 4 153691655 153691655 G A TIGD4 Missense_Mutation p.P168S 0.11 tolerated(0.09) possibly_damaging(0.886) TCGA-D3-A5GU-06 4 155530818 155530818 G C FGG Missense_Mutation p.I210M 0.39 tolerated(0.61) possibly_damaging(0.856) TCGA-D3-A5GU-06 4 162307269 162307269 C T FSTL5 Missense_Mutation p.G725E 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 4 1643071 1643071 G A FAM53A Silent p.V382V 0.27 TCGA-D3-A5GU-06 4 175598363 175598363 G C GLRA3 Missense_Mutation p.L265V 0.42 tolerated(0.06) benign(0.327) TCGA-D3-A5GU-06 4 183814198 183814198 G A DCTD Silent p.A159A 0.48 TCGA-D3-A5GU-06 4 184931439 184931439 G A STOX2 Missense_Mutation p.R483K 0.64 tolerated(0.16) probably_damaging(0.99) TCGA-D3-A5GU-06 4 187455385 187455385 C T MTNR1A Missense_Mutation p.D171N 0.43 deleterious(0.03) benign(0.148) TCGA-D3-A5GU-06 4 23833265 23833265 C T PPARGC1A Missense_Mutation p.G115E 0.50 tolerated(0.09) probably_damaging(0.972) TCGA-D3-A5GU-06 4 25665863 25665863 G A SLC34A2 Missense_Mutation p.G97E 0.37 tolerated(0.06) possibly_damaging(0.564) TCGA-D3-A5GU-06 4 2940994 2940994 C A NOP14 Nonsense_Mutation p.E799* 0.30 TCGA-D3-A5GU-06 4 2994003 2994003 G A GRK4 Missense_Mutation p.R108K 0.28 tolerated(1) benign(0.002) TCGA-D3-A5GU-06 4 3443794 3443794 C T HGFAC Silent p.L22L 0.57 TCGA-D3-A5GU-06 4 38799206 38799206 T G TLR1 Missense_Mutation p.K416T 0.28 tolerated(0.05) benign(0.018) TCGA-D3-A5GU-06 4 47408877 47408877 A T GABRB1 Missense_Mutation p.K338N 0.16 deleterious(0.05) possibly_damaging(0.501) TCGA-D3-A5GU-06 4 47408878 47408878 A C GABRB1 Missense_Mutation p.K339Q 0.16 tolerated(0.34) probably_damaging(0.914) TCGA-D3-A5GU-06 4 48894811 48894811 C T OCIAD2 Missense_Mutation p.G121S 0.40 tolerated(0.13) possibly_damaging(0.527) TCGA-D3-A5GU-06 4 48906531 48906531 T C OCIAD2 Silent p.K12K 0.43 TCGA-D3-A5GU-06 4 5333116 5333116 C T STK32B Missense_Mutation p.H144Y 0.39 deleterious(0) probably_damaging(0.955) TCGA-D3-A5GU-06 4 55131228 55131228 C T PDGFRA Intron 0.33 TCGA-D3-A5GU-06 4 57797183 57797183 C T REST Missense_Mutation p.P720L 0.43 tolerated_low_confidence(0.09) benign(0.055) TCGA-D3-A5GU-06 4 619617 619617 G A PDE6B Missense_Mutation p.E68K 0.31 tolerated(0.1) probably_damaging(0.998) TCGA-D3-A5GU-06 4 6596420 6596420 C T MAN2B2 Missense_Mutation p.R340C 0.26 deleterious(0.05) possibly_damaging(0.631) TCGA-D3-A5GU-06 4 69203114 69203114 C G YTHDC1 Missense_Mutation p.E172Q 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A5GU-06 4 69533853 69533853 G A UGT2B15 Nonsense_Mutation p.R260* 0.47 TCGA-D3-A5GU-06 4 69817322 69817322 C T UGT2A3 Missense_Mutation p.V53I 0.30 tolerated(0.13) probably_damaging(0.986) TCGA-D3-A5GU-06 4 71201233 71201233 C T CABS1 Silent p.T159T 0.46 TCGA-D3-A5GU-06 4 73186523 73186523 G A ADAMTS3 Missense_Mutation p.S337F 0.42 tolerated(0.52) benign(0.001) TCGA-D3-A5GU-06 4 80328367 80328367 G A GK2 Missense_Mutation p.R330C 0.43 deleterious(0.01) probably_damaging(0.946) TCGA-D3-A5GU-06 4 85707256 85707256 G A WDFY3 Missense_Mutation p.P1313L 0.17 tolerated(0.09) benign(0.003) TCGA-D3-A5GU-06 4 89668818 89668818 C T FAM13A Silent p.E782E 0.42 TCGA-D3-A5GU-06 4 90170801 90170801 G A GPRIN3 Missense_Mutation p.S154F 0.44 tolerated(0.2) benign(0.014) TCGA-D3-A5GU-06 5 1087107 1087107 C T SLC12A7 Missense_Mutation p.E196K 0.43 deleterious(0) probably_damaging(0.973) TCGA-D3-A5GU-06 5 112175096 112175096 A T APC Missense_Mutation p.I1269L 0.38 probably_damaging(0.996) TCGA-D3-A5GU-06 5 1271297 1271297 C T TERT Missense_Mutation p.S802N 0.32 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A5GU-06 5 132435264 132435264 G A HSPA4 Missense_Mutation p.E653K 0.20 deleterious(0.03) possibly_damaging(0.719) TCGA-D3-A5GU-06 5 1339043 1339043 G A CLPTM1L Silent p.N177N 0.46 TCGA-D3-A5GU-06 5 1339045 1339045 T A CLPTM1L Missense_Mutation p.N177Y 0.45 tolerated(0.08) benign(0.261) TCGA-D3-A5GU-06 5 137089375 137089375 G A HNRNPA0 Silent p.A127A 0.25 TCGA-D3-A5GU-06 5 137089376 137089376 G A HNRNPA0 Missense_Mutation p.A127V 0.25 tolerated(0.22) possibly_damaging(0.679) TCGA-D3-A5GU-06 5 137244533 137244533 G A PKD2L2 Missense_Mutation p.G409E 0.62 deleterious(0.01) possibly_damaging(0.519) TCGA-D3-A5GU-06 5 13737583 13737583 G A DNAH5 Missense_Mutation p.H3745Y 0.36 benign(0.415) TCGA-D3-A5GU-06 5 13769236 13769236 C T DNAH5 Missense_Mutation p.E3244K 0.16 possibly_damaging(0.621) TCGA-D3-A5GU-06 5 138362517 138362517 G A SIL1 Silent p.L206L 0.28 TCGA-D3-A5GU-06 5 13864614 13864614 C T DNAH5 Nonsense_Mutation p.W1496* 0.39 TCGA-D3-A5GU-06 5 13864615 13864615 C T DNAH5 Nonsense_Mutation p.W1496* 0.39 TCGA-D3-A5GU-06 5 13901544 13901544 G A DNAH5 Silent p.I623I 0.17 TCGA-D3-A5GU-06 5 139060575 139060575 C T CXXC5 Missense_Mutation p.A156V 0.45 tolerated(0.25) benign(0.095) TCGA-D3-A5GU-06 5 13914711 13914711 G A DNAH5 Missense_Mutation p.T413I 0.37 possibly_damaging(0.803) TCGA-D3-A5GU-06 5 140188662 140188662 G A PCDHA4 Silent p.E630E 0.28 TCGA-D3-A5GU-06 5 140307459 140307459 G A PCDHAC1 Missense_Mutation p.V328M 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 5 140433458 140433458 G A PCDHB1 Silent p.R801R 0.28 TCGA-D3-A5GU-06 5 140751263 140751263 C T PCDHGB3 Silent p.S434S 0.46 TCGA-D3-A5GU-06 5 140754526 140754526 C T PCDHGA6 Silent p.F292F 0.37 TCGA-D3-A5GU-06 5 140789886 140789886 C T PCDHGB6 Missense_Mutation p.A706V 0.49 tolerated(0.17) benign(0.081) TCGA-D3-A5GU-06 5 140793336 140793336 G A PCDHGA10 Silent p.L198L 0.49 TCGA-D3-A5GU-06 5 140793337 140793337 G A PCDHGA10 Missense_Mutation p.V199I 0.48 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-D3-A5GU-06 5 140953121 140953121 C T DIAPH1 Missense_Mutation p.G766R 0.27 probably_damaging(0.997) TCGA-D3-A5GU-06 5 141244203 141244203 G A PCDH1 Nonsense_Mutation p.Q565* 0.51 TCGA-D3-A5GU-06 5 14405957 14405957 G A TRIO Missense_Mutation p.A1573T 0.44 possibly_damaging(0.475) TCGA-D3-A5GU-06 5 145543883 145543883 A T LARS Missense_Mutation p.M195K 0.24 deleterious(0) benign(0.278) TCGA-D3-A5GU-06 5 145719371 145719371 G A POU4F3 Silent p.L127L 0.28 TCGA-D3-A5GU-06 5 149582207 149582207 C T SLC6A7 Missense_Mutation p.S343F 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GU-06 5 149582208 149582208 C T SLC6A7 Silent p.S343S 0.29 TCGA-D3-A5GU-06 5 150885659 150885659 C T FAT2 Splice_Site p.X4173_splice 0.24 TCGA-D3-A5GU-06 5 156607932 156607932 C T ITK 5'UTR 0.50 TCGA-D3-A5GU-06 5 156723693 156723693 G A CYFIP2 Missense_Mutation p.E74K 0.51 tolerated(0.05) benign(0.028) TCGA-D3-A5GU-06 5 159776148 159776148 C T C1QTNF2 3'UTR 0.42 TCGA-D3-A5GU-06 5 160721269 160721269 C T GABRB2 Missense_Mutation p.R453Q 0.25 deleterious(0.03) benign(0.298) TCGA-D3-A5GU-06 5 169535737 169535737 G A FOXI1 3'UTR 0.60 TCGA-D3-A5GU-06 5 172518054 172518054 C T CREBRF Missense_Mutation p.P291L 0.41 deleterious_low_confidence(0.04) benign(0.013) TCGA-D3-A5GU-06 5 176008550 176008550 C T CDHR2 Silent p.L675L 0.24 TCGA-D3-A5GU-06 5 176477759 176477759 C T ZNF346 Silent p.H175H 0.47 TCGA-D3-A5GU-06 5 176477760 176477760 C T ZNF346 Nonsense_Mutation p.Q176* 0.47 TCGA-D3-A5GU-06 5 178585775 178585775 C T ADAMTS2 Missense_Mutation p.D361N 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 5 180053029 180053029 G A FLT4 Missense_Mutation p.P421S 0.38 deleterious(0) probably_damaging(0.933) TCGA-D3-A5GU-06 5 180661628 180661628 C T TRIM41 Silent p.Y582Y 0.37 TCGA-D3-A5GU-06 5 180661629 180661629 C T TRIM41 Silent p.L583L 0.36 TCGA-D3-A5GU-06 5 31323357 31323357 C G CDH6 Missense_Mutation p.P772R 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 5 32053957 32053957 G A PDZD2 Missense_Mutation p.G623E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 5 33463925 33463925 C T TARS Nonsense_Mutation p.Q668* 0.30 TCGA-D3-A5GU-06 5 35727789 35727789 G A SPEF2 Missense_Mutation p.G976E 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A5GU-06 5 35910093 35910093 C T CAPSL Missense_Mutation p.E134K 0.38 deleterious(0.02) benign(0.223) TCGA-D3-A5GU-06 5 35965695 35965695 C T UGT3A1 Silent p.R212R 0.38 TCGA-D3-A5GU-06 5 38502880 38502880 C T LIFR Missense_Mutation p.V487I 0.40 tolerated(0.2) benign(0.001) TCGA-D3-A5GU-06 5 38881793 38881793 G A OSMR Silent p.K115K 0.46 TCGA-D3-A5GU-06 5 41143073 41143073 G C C6 Missense_Mutation p.Q887E 0.16 tolerated(0.23) benign(0.064) TCGA-D3-A5GU-06 5 42718559 42718559 G A GHR Missense_Mutation p.G317E 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 5 42718722 42718722 G A GHR Silent p.E371E 0.44 TCGA-D3-A5GU-06 5 49699234 49699234 C T EMB Missense_Mutation p.E219K 0.34 tolerated(0.14) possibly_damaging(0.69) TCGA-D3-A5GU-06 5 49706744 49706744 C T EMB Missense_Mutation p.E147K 0.50 tolerated(0.38) benign(0.015) TCGA-D3-A5GU-06 5 5186196 5186196 C T ADAMTS16 Silent p.F265F 0.39 TCGA-D3-A5GU-06 5 64913954 64913954 G A TRIM23 Silent p.I70I 0.42 TCGA-D3-A5GU-06 5 6604786 6604786 C T NSUN2 Missense_Mutation p.G584R 0.31 deleterious(0) benign(0.417) TCGA-D3-A5GU-06 5 74032630 74032631 - A GFM2 Frame_Shift_Ins p.K501* 0.26 TCGA-D3-A5GU-06 5 76251507 76251507 G A CRHBP Silent p.E121E 0.38 TCGA-D3-A5GU-06 5 89924543 89924543 C T GPR98 Missense_Mutation p.P468L 0.29 benign(0.091) TCGA-D3-A5GU-06 5 89925045 89925045 G A GPR98 Missense_Mutation p.D510N 0.26 possibly_damaging(0.811) TCGA-D3-A5GU-06 5 90049426 90049426 C T GPR98 Silent p.I3719I 0.33 TCGA-D3-A5GU-06 5 94134754 94134754 C G MCTP1 Missense_Mutation p.L840F 0.28 tolerated(0.27) benign(0.084) TCGA-D3-A5GU-06 6 108250629 108250629 G A SEC63 Missense_Mutation p.P72S 0.49 tolerated(0.7) benign(0.004) TCGA-D3-A5GU-06 6 108499447 108499447 T A NR2E1 Splice_Site p.X214_splice 0.27 TCGA-D3-A5GU-06 6 126073177 126073177 C T HEY2 Missense_Mutation p.R63W 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 6 129774169 129774169 C A LAMA2 Silent p.R2156R 0.63 TCGA-D3-A5GU-06 6 129950593 129950593 T C ARHGAP18 Missense_Mutation p.N231D 0.53 deleterious(0.05) benign(0.143) TCGA-D3-A5GU-06 6 151687339 151687339 C A ZBTB2 Nonsense_Mutation p.E288* 0.32 TCGA-D3-A5GU-06 6 153043212 153043212 G A MYCT1 Missense_Mutation p.V178M 0.32 tolerated(0.13) probably_damaging(0.971) TCGA-D3-A5GU-06 6 153043213 153043213 T A MYCT1 Missense_Mutation p.V178E 0.32 tolerated(0.24) probably_damaging(0.917) TCGA-D3-A5GU-06 6 157528219 157528219 C T ARID1B Missense_Mutation p.H1982Y 0.41 probably_damaging(0.974) TCGA-D3-A5GU-06 6 158074587 158074587 C G ZDHHC14 Silent p.P332P 0.17 TCGA-D3-A5GU-06 6 160966476 160966476 G A LPA Silent p.L1798L 0.43 TCGA-D3-A5GU-06 6 160999712 160999712 C T LPA Silent p.R1438R 0.20 TCGA-D3-A5GU-06 6 161015101 161015101 C T LPA Missense_Mutation p.G1173E 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 6 166571735 166571735 C T T 3'UTR 0.50 TCGA-D3-A5GU-06 6 24301982 24301982 A G DCDC2 Missense_Mutation p.V173A 0.28 deleterious(0.01) benign(0.391) TCGA-D3-A5GU-06 6 24658906 24658906 G A TDP2 Missense_Mutation p.S103F 0.27 deleterious(0) possibly_damaging(0.541) TCGA-D3-A5GU-06 6 26368427 26368427 C T BTN3A2 Missense_Mutation p.S6F 0.15 tolerated(0.09) benign(0.01) TCGA-D3-A5GU-06 6 28268779 28268779 C T PGBD1 Missense_Mutation p.S383L 0.26 tolerated(0.05) benign(0.053) TCGA-D3-A5GU-06 6 28497379 28497379 C T GPX5 Missense_Mutation p.P80L 0.58 tolerated(0.8) benign(0.026) TCGA-D3-A5GU-06 6 31996724 31996724 G A C4B Silent p.G1130G 0.18 TCGA-D3-A5GU-06 6 31996725 31996725 G A C4B Missense_Mutation p.G1131S 0.18 deleterious(0) probably_damaging(0.98) TCGA-D3-A5GU-06 6 32008877 32008877 G A CYP21A2 Missense_Mutation p.G485E 0.76 deleterious_low_confidence(0.02) benign(0.009) TCGA-D3-A5GU-06 6 32180277 32180277 G A NOTCH4 Missense_Mutation p.S885F 0.28 deleterious(0) benign(0.004) TCGA-D3-A5GU-06 6 33419698 33419698 G A SYNGAP1 3'UTR 0.52 TCGA-D3-A5GU-06 6 33423431 33423431 C T ZBTB9 Missense_Mutation p.S185F 0.63 tolerated(0.16) benign(0.135) TCGA-D3-A5GU-06 6 35436650 35436650 A C RPL10A Missense_Mutation p.K27T 0.62 deleterious(0.02) benign(0.174) TCGA-D3-A5GU-06 6 36178151 36178151 C T BRPF3 Silent p.F675F 0.52 TCGA-D3-A5GU-06 6 38820524 38820524 G A DNAH8 Missense_Mutation p.D1624N 0.30 benign(0.029) TCGA-D3-A5GU-06 6 42666229 42666229 C T PRPH2 Missense_Mutation p.G282E 0.55 deleterious(0) possibly_damaging(0.876) TCGA-D3-A5GU-06 6 46672316 46672316 C T PLA2G7 Missense_Mutation p.G436E 0.53 tolerated_low_confidence(0.14) benign(0.026) TCGA-D3-A5GU-06 6 47649532 47649532 C T GPR111 Nonsense_Mutation p.Q413* 0.28 TCGA-D3-A5GU-06 6 49604509 49604509 G A RHAG Missense_Mutation p.P6L 0.63 deleterious(0) possibly_damaging(0.879) TCGA-D3-A5GU-06 6 49665577 49665577 G A CRISP2 Missense_Mutation p.P171S 0.53 deleterious(0) probably_damaging(0.954) TCGA-D3-A5GU-06 6 51918901 51918901 G A PKHD1 Silent p.I633I 0.67 TCGA-D3-A5GU-06 6 57033253 57033253 C T ZNF451 Missense_Mutation p.L1058F 0.26 deleterious_low_confidence(0) benign(0.011) TCGA-D3-A5GU-06 6 6248555 6248555 C T F13A1 Missense_Mutation p.G263E 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A5GU-06 6 71009877 71009877 C T COL9A1 Silent p.G56G 0.31 TCGA-D3-A5GU-06 6 75840603 75840603 C T COL12A1 Missense_Mutation p.G2011E 0.22 benign(0.375) TCGA-D3-A5GU-06 6 90428268 90428268 G A MDN1 Missense_Mutation p.L2134F 0.44 probably_damaging(0.923) TCGA-D3-A5GU-06 6 90428269 90428269 G A MDN1 Silent p.L2133L 0.45 TCGA-D3-A5GU-06 6 90482431 90482431 G A MDN1 Silent p.F648F 0.27 TCGA-D3-A5GU-06 7 100225714 100225714 G A TFR2 Silent p.L507L 0.17 TCGA-D3-A5GU-06 7 100551975 100551975 C T MUC3A Silent p.I242I 0.11 TCGA-D3-A5GU-06 7 103275927 103275927 C T RELN Missense_Mutation p.G804R 0.21 deleterious(0) probably_damaging(0.941) TCGA-D3-A5GU-06 7 105112607 105112607 C T PUS7 Missense_Mutation p.M403I 0.26 tolerated(0.64) benign(0.004) TCGA-D3-A5GU-06 7 105516868 105516868 G A ATXN7L1 Missense_Mutation p.P46L 0.40 deleterious(0) probably_damaging(0.979) TCGA-D3-A5GU-06 7 107342365 107342365 G A SLC26A4 Missense_Mutation p.E633K 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A5GU-06 7 1097586 1097586 G A GPR146 Silent p.R145R 0.14 TCGA-D3-A5GU-06 7 114655981 114655981 C T MDFIC Missense_Mutation p.P354S 0.16 tolerated(0.23) probably_damaging(0.999) TCGA-D3-A5GU-06 7 115624343 115624343 C T TFEC Silent p.G51G 0.20 TCGA-D3-A5GU-06 7 126079121 126079121 C T GRM8 3'UTR 0.16 TCGA-D3-A5GU-06 7 126086198 126086198 C T GRM8 Missense_Mutation p.E887K 0.36 tolerated(0.11) benign(0.292) TCGA-D3-A5GU-06 7 136700756 136700756 G A CHRM2 Missense_Mutation p.E382K 0.38 deleterious(0.05) probably_damaging(0.991) TCGA-D3-A5GU-06 7 137206693 137206693 G A DGKI Missense_Mutation p.R723C 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GU-06 7 140273704 140273704 G A DENND2A Silent p.S450S 0.20 TCGA-D3-A5GU-06 7 140273705 140273705 G A DENND2A Missense_Mutation p.S450F 0.19 deleterious(0.02) benign(0.25) TCGA-D3-A5GU-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-D3-A5GU-06 7 148767681 148767681 G A ZNF786 Missense_Mutation p.P728L 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A5GU-06 7 149986663 149986663 C T ACTR3C Missense_Mutation p.G58E 0.12 deleterious(0.01) possibly_damaging(0.713) TCGA-D3-A5GU-06 7 149986664 149986664 C T ACTR3C Missense_Mutation p.G58R 0.13 deleterious(0) probably_damaging(0.976) TCGA-D3-A5GU-06 7 151664387 151664387 G A GALNTL5 Nonsense_Mutation p.W19* 0.36 TCGA-D3-A5GU-06 7 158851213 158851213 C T VIPR2 Silent p.L138L 0.38 TCGA-D3-A5GU-06 7 17874413 17874413 G A SNX13 Missense_Mutation p.P479S 0.32 tolerated(0.08) benign(0.113) TCGA-D3-A5GU-06 7 20418793 20418793 G A ITGB8 Missense_Mutation p.G170R 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 7 20689753 20689753 G A ABCB5 Missense_Mutation p.D439N 0.45 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GU-06 7 20785055 20785055 C T ABCB5 Silent p.L1141L 0.47 TCGA-D3-A5GU-06 7 208951 208951 G A FAM20C Missense_Mutation p.G280R 0.36 deleterious(0) possibly_damaging(0.895) TCGA-D3-A5GU-06 7 208952 208952 G A FAM20C Missense_Mutation p.G280E 0.36 deleterious(0) benign(0.298) TCGA-D3-A5GU-06 7 22190042 22190042 C T RAPGEF5 Missense_Mutation p.D470N 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A5GU-06 7 22349660 22349660 G A RAPGEF5 5'UTR 0.44 TCGA-D3-A5GU-06 7 24738800 24738800 C T DFNA5 Missense_Mutation p.G446R 0.50 tolerated(0.38) benign(0.06) TCGA-D3-A5GU-06 7 24901378 24901378 G A OSBPL3 Missense_Mutation p.P294L 0.41 tolerated(0.71) benign(0.036) TCGA-D3-A5GU-06 7 30821653 30821653 T G FAM188B Missense_Mutation p.F82V 0.43 tolerated(0.52) benign(0.003) TCGA-D3-A5GU-06 7 31792989 31792989 C T PDE1C 3'UTR 0.19 TCGA-D3-A5GU-06 7 36194748 36194748 C G EEPD1 Missense_Mutation p.S272C 0.30 deleterious(0) probably_damaging(0.997) TCGA-D3-A5GU-06 7 36438973 36438973 G A ANLN Missense_Mutation p.R153Q 0.42 deleterious(0) probably_damaging(0.984) TCGA-D3-A5GU-06 7 38398403 38398403 A G TRGV3 Silent p.L22L 0.44 TCGA-D3-A5GU-06 7 43916520 43916543 CCCTGCTCAGGTCACCAGGTGGAT - URGCP In_Frame_Del p.D840_R847del 0.11 TCGA-D3-A5GU-06 7 44578460 44578460 C T NPC1L1 Silent p.Q512Q 0.41 TCGA-D3-A5GU-06 7 45223171 45223171 G A RAMP3 3'UTR 0.46 TCGA-D3-A5GU-06 7 51085235 51085235 G T COBL 3'UTR 0.33 TCGA-D3-A5GU-06 7 51111352 51111352 C T COBL Silent p.P378P 0.41 TCGA-D3-A5GU-06 7 5521276 5521276 G A FBXL18 3'UTR 0.48 TCGA-D3-A5GU-06 7 55902251 55902251 G A SEPT14 Missense_Mutation p.A196V 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-D3-A5GU-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.48 TCGA-D3-A5GU-06 7 66764385 66764385 G A Y_RNA 5'Flank 0.17 TCGA-D3-A5GU-06 7 70853227 70853227 G A WBSCR17 Silent p.K143K 0.47 TCGA-D3-A5GU-06 7 74239549 74239549 G A GTF2IRD2 Missense_Mutation p.P91S 0.30 tolerated_low_confidence(0.58) benign(0.432) TCGA-D3-A5GU-06 7 75145485 75145485 T A Y_RNA 5'Flank 0.44 TCGA-D3-A5GU-06 7 75517636 75517636 C T RHBDD2 Missense_Mutation p.S355F 0.21 deleterious_low_confidence(0.02) benign(0.259) TCGA-D3-A5GU-06 7 77569641 77569641 G A PHTF2 Intron 0.39 TCGA-D3-A5GU-06 7 81381529 81381529 G A HGF Nonsense_Mutation p.R178* 0.50 TCGA-D3-A5GU-06 7 82580559 82580559 C T PCLO Silent p.V3115V 0.21 TCGA-D3-A5GU-06 7 86394322 86394322 G A GRM3 Intron 0.22 TCGA-D3-A5GU-06 7 86394512 86394512 G A GRM3 Silent p.K17K 0.35 TCGA-D3-A5GU-06 7 86998794 86998794 T C CROT Missense_Mutation p.L245P 0.46 deleterious(0) probably_damaging(0.948) TCGA-D3-A5GU-06 7 87537203 87537203 C T DBF4 Nonsense_Mutation p.R584* 0.49 TCGA-D3-A5GU-06 7 91690670 91690670 C T AKAP9 Nonsense_Mutation p.R1900* 0.19 TCGA-D3-A5GU-06 7 99017501 99017501 C T ATP5J2-PTCD1 3'UTR 0.44 TCGA-D3-A5GU-06 8 101014534 101014534 G A RGS22 Nonsense_Mutation p.R896* 0.44 TCGA-D3-A5GU-06 8 101253000 101253000 G A SPAG1 Splice_Site p.X883_splice 0.39 TCGA-D3-A5GU-06 8 110416859 110416859 G A PKHD1L1 Missense_Mutation p.V484I 0.33 tolerated(0.32) benign(0.114) TCGA-D3-A5GU-06 8 113418770 113418770 G A CSMD3 Missense_Mutation p.S1931F 0.16 deleterious(0) probably_damaging(0.944) TCGA-D3-A5GU-06 8 113933898 113933898 C T CSMD3 Missense_Mutation p.E531K 0.40 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A5GU-06 8 118170030 118170030 C T SLC30A8 Silent p.I173I 0.40 TCGA-D3-A5GU-06 8 121228602 121228602 C T COL14A1 Missense_Mutation p.P537L 0.39 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GU-06 8 125094666 125094666 G A FER1L6 Missense_Mutation p.R1453Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 8 131949333 131949333 C T ADCY8 Missense_Mutation p.M489I 0.34 deleterious(0.05) possibly_damaging(0.835) TCGA-D3-A5GU-06 8 134478159 134478159 C G ST3GAL1 Missense_Mutation p.D161H 0.34 probably_damaging(1) TCGA-D3-A5GU-06 8 139164684 139164684 T C FAM135B Silent p.R678R 0.42 TCGA-D3-A5GU-06 8 139703083 139703083 C T COL22A1 Missense_Mutation p.S930N 0.29 unknown(0) TCGA-D3-A5GU-06 8 141559346 141559346 G A AGO2 Silent p.I485I 0.50 TCGA-D3-A5GU-06 8 144997101 144997101 C T PLEC Silent p.L2469L 0.56 TCGA-D3-A5GU-06 8 145006821 145006821 C G PLEC Silent p.L736L 0.39 TCGA-D3-A5GU-06 8 21856777 21856777 C T XPO7 Silent p.F868F 0.39 TCGA-D3-A5GU-06 8 24207384 24207384 C T ADAM28 Silent p.S666S 0.43 TCGA-D3-A5GU-06 8 24350097 24350097 C T ADAM7 Missense_Mutation p.P548S 0.34 tolerated(0.09) benign(0.099) TCGA-D3-A5GU-06 8 30700164 30700164 G A TEX15 Missense_Mutation p.L2124F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A5GU-06 8 39141113 39141113 C T ADAM32 Missense_Mutation p.S776L 0.28 deleterious_low_confidence(0) unknown(0) TCGA-D3-A5GU-06 8 42175252 42175252 C T IKBKB Silent p.I401I 0.30 TCGA-D3-A5GU-06 8 43014090 43014090 T C HGSNAT Silent p.F132F 0.59 TCGA-D3-A5GU-06 8 52387649 52387649 C T PXDNL Missense_Mutation p.E193K 0.14 tolerated(0.26) benign(0.013) TCGA-D3-A5GU-06 8 53045643 53045643 C T ST18 Silent p.K806K 0.37 TCGA-D3-A5GU-06 8 53084355 53084355 T C ST18 Missense_Mutation p.K356E 0.40 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A5GU-06 8 55538756 55538756 G A RP1 Missense_Mutation p.G772R 0.44 tolerated(0.64) benign(0.015) TCGA-D3-A5GU-06 8 59728274 59728274 C T TOX Missense_Mutation p.E339K 0.38 deleterious(0.01) benign(0.008) TCGA-D3-A5GU-06 8 68423854 68423854 C T CPA6 Silent p.K118K 0.37 TCGA-D3-A5GU-06 8 6874235 6874235 G A DEFA3 Silent p.S46S 0.15 TCGA-D3-A5GU-06 8 69005848 69005848 C T PREX2 Silent p.S753S 0.18 TCGA-D3-A5GU-06 8 69020490 69020490 G A PREX2 Silent p.L954L 0.34 TCGA-D3-A5GU-06 8 69020491 69020491 G A PREX2 Missense_Mutation p.G955R 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A5GU-06 8 73848929 73848929 G A KCNB2 Missense_Mutation p.G447R 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A5GU-06 8 8185909 8185909 G A SGK223 Missense_Mutation p.P795S 0.38 probably_damaging(0.915) TCGA-D3-A5GU-06 8 87439961 87439961 C T WWP1 Missense_Mutation p.S416F 0.15 tolerated(0.44) probably_damaging(0.999) TCGA-D3-A5GU-06 8 87679211 87679211 A C CNGB3 Missense_Mutation p.L265R 0.38 deleterious(0) probably_damaging(0.981) TCGA-D3-A5GU-06 8 8869061 8869061 G A ERI1 Silent p.K99K 0.25 TCGA-D3-A5GU-06 8 92082560 92082560 C T OTUD6B Missense_Mutation p.P13L 0.28 tolerated_low_confidence(0.17) benign(0) TCGA-D3-A5GU-06 9 103055064 103055064 G A INVS Missense_Mutation p.G842E 0.27 tolerated_low_confidence(0.38) benign(0.03) TCGA-D3-A5GU-06 9 107298150 107298150 C T OR13C3 Silent p.G315G 0.31 TCGA-D3-A5GU-06 9 111727724 111727724 C A CTNNAL1 Nonsense_Mutation p.E509* 0.23 TCGA-D3-A5GU-06 9 113149577 113149577 G A SVEP1 Missense_Mutation p.P3350S 0.39 probably_damaging(1) TCGA-D3-A5GU-06 9 113197546 113197546 G A SVEP1 Silent p.I1621I 0.19 TCGA-D3-A5GU-06 9 117186686 117186686 C T DFNB31 Silent p.E448E 0.31 TCGA-D3-A5GU-06 9 123779926 123779926 G A C5 Missense_Mutation p.L571F 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A5GU-06 9 125616864 125616864 G A RC3H2 Missense_Mutation p.S949L 0.36 tolerated(0.65) probably_damaging(0.942) TCGA-D3-A5GU-06 9 127684013 127684013 C T GOLGA1 Silent p.L240L 0.34 TCGA-D3-A5GU-06 9 130700168 130700168 G A DPM2 5'UTR 0.34 TCGA-D3-A5GU-06 9 131346081 131346081 G A SPTAN1 Missense_Mutation p.E676K 0.20 deleterious(0.05) possibly_damaging(0.476) TCGA-D3-A5GU-06 9 131482500 131482500 G A PKN3 Missense_Mutation p.E799K 0.33 deleterious(0.03) benign(0.3) TCGA-D3-A5GU-06 9 133948706 133948706 G A LAMC3 Silent p.R1164R 0.24 TCGA-D3-A5GU-06 9 134387467 134387467 G A POMT1 Silent p.V364V 0.32 TCGA-D3-A5GU-06 9 135759383 135759383 C T C9orf9 Missense_Mutation p.L17F 0.39 deleterious(0.01) possibly_damaging(0.718) TCGA-D3-A5GU-06 9 138516311 138516311 C T GLT6D1 Missense_Mutation p.G155S 0.30 tolerated(0.54) benign(0.136) TCGA-D3-A5GU-06 9 139301871 139301871 G A SDCCAG3 Missense_Mutation p.T182I 0.39 deleterious(0.04) benign(0.002) TCGA-D3-A5GU-06 9 140077625 140077625 G A ANAPC2 Missense_Mutation p.S413F 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A5GU-06 9 140151387 140151387 G A NELFB Missense_Mutation p.E160K 0.23 deleterious(0) probably_damaging(0.993) TCGA-D3-A5GU-06 9 140991020 140991020 G A CACNA1B Missense_Mutation p.D1727N 0.41 deleterious(0) probably_damaging(0.942) TCGA-D3-A5GU-06 9 14722463 14722463 C T CER1 Missense_Mutation p.G70R 0.25 tolerated(0.58) benign(0.005) TCGA-D3-A5GU-06 9 14859445 14859445 G A FREM1 Silent p.L123L 0.37 TCGA-D3-A5GU-06 9 21201927 21201927 G A IFNA7 Missense_Mutation p.L80F 0.32 deleterious(0.04) benign(0.146) TCGA-D3-A5GU-06 9 21334623 21334623 G A KLHL9 Missense_Mutation p.A79V 0.34 deleterious(0) probably_damaging(0.983) TCGA-D3-A5GU-06 9 27229199 27229199 G A TEK Missense_Mutation p.G1115E 0.30 deleterious(0) probably_damaging(0.994) TCGA-D3-A5GU-06 9 28888901 28888901 C T MIR873 RNA 0.54 TCGA-D3-A5GU-06 9 33167144 33167144 C T B4GALT1 Silent p.L8L 0.29 TCGA-D3-A5GU-06 9 33344120 33344120 C T NFX1 Missense_Mutation p.P760S 0.37 tolerated(0.12) benign(0.209) TCGA-D3-A5GU-06 9 35076968 35076968 C T FANCG Missense_Mutation p.M259I 0.25 deleterious(0.03) possibly_damaging(0.755) TCGA-D3-A5GU-06 9 35663365 35663365 C A ARHGEF39 Missense_Mutation p.L166F 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A5GU-06 9 35713965 35713965 G T TLN1 Silent p.P1078P 0.30 TCGA-D3-A5GU-06 9 35810444 35810444 G A SPAG8 Missense_Mutation p.P398S 0.30 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A5GU-06 9 36227307 36227307 G A GNE Silent p.L438L 0.31 TCGA-D3-A5GU-06 9 37487866 37487866 G A POLR1E Missense_Mutation p.E63K 0.40 tolerated(0.07) benign(0.29) TCGA-D3-A5GU-06 9 37888379 37888379 G A SLC25A51 Nonsense_Mutation p.R57* 0.27 TCGA-D3-A5GU-06 9 38396127 38396127 G A ALDH1B1 Missense_Mutation p.G128R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 9 71155629 71155629 G A TMEM252 Silent p.F34F 0.29 TCGA-D3-A5GU-06 9 72131745 72131745 C T APBA1 Missense_Mutation p.E128K 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-D3-A5GU-06 9 73461384 73461384 G A TRPM3 Nonsense_Mutation p.Q196* 0.42 TCGA-D3-A5GU-06 9 78686707 78686707 C A PCSK5 Missense_Mutation p.Q263K 0.39 deleterious(0.01) probably_damaging(0.964) TCGA-D3-A5GU-06 9 78947496 78947496 G A PCSK5 Missense_Mutation p.G1546E 0.38 tolerated(0.12) benign(0.129) TCGA-D3-A5GU-06 9 79321804 79321804 C T PRUNE2 Missense_Mutation p.G1796R 0.35 tolerated(0.53) benign(0.009) TCGA-D3-A5GU-06 9 88636901 88636901 G A NAA35 3'UTR 0.54 TCGA-D3-A5GU-06 9 88636902 88636902 G A NAA35 3'UTR 0.54 TCGA-D3-A5GU-06 9 90582107 90582107 T G CDK20 3'UTR 0.33 TCGA-D3-A5GU-06 9 96051849 96051849 C T WNK2 Missense_Mutation p.P1642S 0.30 unknown(0) TCGA-D3-A5GU-06 X 100531342 100531342 A T TAF7L Missense_Mutation p.F375Y 0.89 deleterious(0) possibly_damaging(0.893) TCGA-D3-A5GU-06 X 102755029 102755029 C T RAB40A Missense_Mutation p.R219K 0.81 tolerated_low_confidence(1) benign(0.014) TCGA-D3-A5GU-06 X 102978824 102978824 G A GLRA4 Silent p.F179F 0.87 TCGA-D3-A5GU-06 X 10417593 10417593 G A MID1 Silent p.L607L 0.91 TCGA-D3-A5GU-06 X 105450598 105450598 A T MUM1L1 Missense_Mutation p.E391D 0.82 deleterious(0) probably_damaging(0.982) TCGA-D3-A5GU-06 X 106070458 106070458 G A TBC1D8B Missense_Mutation p.G365E 0.90 deleterious(0.03) benign(0.029) TCGA-D3-A5GU-06 X 107976577 107976577 G A IRS4 Missense_Mutation p.L1000F 0.88 tolerated(0.12) unknown(0) TCGA-D3-A5GU-06 X 114244154 114244154 G T IL13RA2 Missense_Mutation p.P261H 0.85 deleterious(0) probably_damaging(0.999) TCGA-D3-A5GU-06 X 115594107 115594107 G A CT83 5'UTR 0.93 TCGA-D3-A5GU-06 X 118243074 118243074 G A KIAA1210 Missense_Mutation p.P248S 0.80 tolerated(0.14) benign(0.09) TCGA-D3-A5GU-06 X 1327743 1327743 C T CRLF2 Nonsense_Mutation p.W46* 0.60 TCGA-D3-A5GU-06 X 1327744 1327744 C T CRLF2 Nonsense_Mutation p.W46* 0.59 TCGA-D3-A5GU-06 X 1407734 1407734 G A CSF2RA Silent p.P142P 0.40 TCGA-D3-A5GU-06 X 140993835 140993835 G A MAGEC1 Silent p.Q215Q 0.36 TCGA-D3-A5GU-06 X 1419394 1419394 C T CSF2RA Missense_Mutation p.S274F 0.18 tolerated(0.12) benign(0.119) TCGA-D3-A5GU-06 X 153171269 153171269 C T AVPR2 Silent p.D103D 0.89 TCGA-D3-A5GU-06 X 153736902 153736902 C T FAM3A Missense_Mutation p.G60S 0.85 deleterious(0.03) probably_damaging(1) TCGA-D3-A5GU-06 X 18845509 18845509 A G PPEF1 Silent p.K622K 0.93 TCGA-D3-A5GU-06 X 2407142 2407142 G A ZBED1 Missense_Mutation p.P540L 0.62 deleterious(0) benign(0.287) TCGA-D3-A5GU-06 X 3007612 3007612 C T ARSF Silent p.F302F 0.90 TCGA-D3-A5GU-06 X 30237172 30237172 G A MAGEB2 Missense_Mutation p.G159S 0.92 tolerated(0.31) benign(0.027) TCGA-D3-A5GU-06 X 31366706 31366706 C T DMD Missense_Mutation p.D3044N 0.34 possibly_damaging(0.728) TCGA-D3-A5GU-06 X 31366707 31366707 C T DMD Silent p.R3043R 0.34 TCGA-D3-A5GU-06 X 31947833 31947833 C T DMD Silent p.Q2264Q 0.85 TCGA-D3-A5GU-06 X 3229307 3229307 C T MXRA5 Missense_Mutation p.E2313K 0.91 tolerated(0.18) possibly_damaging(0.847) TCGA-D3-A5GU-06 X 37026573 37026573 C T FAM47C Silent p.F30F 0.25 TCGA-D3-A5GU-06 X 44101481 44101481 C T EFHC2 Missense_Mutation p.R389K 1.00 tolerated(0.28) benign(0.034) TCGA-D3-A5GU-06 X 47775142 47775142 C T ZNF81 Missense_Mutation p.S366L 0.90 deleterious(0) possibly_damaging(0.907) TCGA-D3-A5GU-06 X 48419064 48419064 C T TBC1D25 Missense_Mutation p.P590S 0.86 tolerated(0.17) benign(0.002) TCGA-D3-A5GU-06 X 69283109 69283109 C T OTUD6A Silent p.I245I 0.92 TCGA-D3-A5GU-06 X 73046394 73046394 G T XIST RNA 0.85 TCGA-D3-A5GU-06 X 77112976 77112976 G A MAGT1 Missense_Mutation p.P169S 0.82 deleterious(0) probably_damaging(1) TCGA-D3-A5GU-06 X 84563164 84563164 C T POF1B Missense_Mutation p.R339Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A5GU-06 X 85906120 85906120 G A DACH2 Missense_Mutation p.G241E 0.84 tolerated(0.23) possibly_damaging(0.703) TCGA-D3-A5GU-06 X 86869444 86869444 C T KLHL4 Missense_Mutation p.L200F 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 10 104831596 104831596 G A CNNM2 Missense_Mutation p.G745S 0.15 tolerated(0.89) benign(0.001) TCGA-D3-A8GB-06 10 105217993 105217993 G A CALHM1 Silent p.A172A 0.22 TCGA-D3-A8GB-06 10 114905774 114905774 G A TCF7L2 Missense_Mutation p.G265S 0.14 tolerated(0.31) probably_damaging(1) TCGA-D3-A8GB-06 10 114905775 114905775 G A TCF7L2 Missense_Mutation p.G265D 0.14 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 10 115917403 115917403 G A C10orf118 Silent p.F223F 0.09 TCGA-D3-A8GB-06 10 116044700 116044700 C T VWA2 Missense_Mutation p.P323L 0.21 tolerated(0.23) benign(0.12) TCGA-D3-A8GB-06 10 12149924 12149924 C T DHTKD1 Silent p.L688L 0.19 TCGA-D3-A8GB-06 10 121618633 121618633 G A MCMBP Missense_Mutation p.R69C 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 10 12198982 12198982 G A SEC61A2 Silent p.R231R 0.18 TCGA-D3-A8GB-06 10 12198983 12198983 G A SEC61A2 Missense_Mutation p.E232K 0.19 deleterious(0.02) benign(0.244) TCGA-D3-A8GB-06 10 125514212 125514212 A T CPXM2 Missense_Mutation p.S662T 0.17 deleterious(0.02) possibly_damaging(0.755) TCGA-D3-A8GB-06 10 125805359 125805359 C T CHST15 Missense_Mutation p.D124N 0.19 tolerated(0.11) benign(0.04) TCGA-D3-A8GB-06 10 12595237 12595237 G A CAMK1D Missense_Mutation p.E36K 0.14 tolerated(0.08) benign(0.033) TCGA-D3-A8GB-06 10 126631261 126631261 T A ZRANB1 Missense_Mutation p.C67S 0.13 tolerated(0.77) possibly_damaging(0.704) TCGA-D3-A8GB-06 10 126631320 126631320 T A ZRANB1 Missense_Mutation p.N86K 0.21 tolerated(0.76) benign(0.003) TCGA-D3-A8GB-06 10 127458957 127458957 C T MMP21 Missense_Mutation p.D395N 0.17 deleterious(0.03) possibly_damaging(0.803) TCGA-D3-A8GB-06 10 128973748 128973748 G A FAM196A Silent p.A304A 0.10 TCGA-D3-A8GB-06 10 128973749 128973749 G A FAM196A Missense_Mutation p.A304V 0.11 tolerated(0.05) benign(0.056) TCGA-D3-A8GB-06 10 134646871 134646871 C T TTC40 Missense_Mutation p.E2370K 0.18 tolerated(0.05) benign(0.025) TCGA-D3-A8GB-06 10 15255455 15255455 G A FAM171A1 Missense_Mutation p.S711F 0.09 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 10 15255456 15255456 A C FAM171A1 Missense_Mutation p.S711A 0.10 deleterious(0) possibly_damaging(0.705) TCGA-D3-A8GB-06 10 16877156 16877156 T C CUBN Missense_Mutation p.R3407G 0.16 deleterious(0.03) benign(0.393) TCGA-D3-A8GB-06 10 24809159 24809159 G A KIAA1217 Missense_Mutation p.G762E 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 10 30317618 30317618 C T KIAA1462 Missense_Mutation p.E487K 0.15 tolerated(0.16) benign(0.056) TCGA-D3-A8GB-06 10 37508525 37508525 G A ANKRD30A Missense_Mutation p.M1239I 0.12 deleterious(0.04) benign(0.002) TCGA-D3-A8GB-06 10 37508535 37508535 G A ANKRD30A Missense_Mutation p.E1243K 0.20 deleterious(0) possibly_damaging(0.636) TCGA-D3-A8GB-06 10 43678881 43678881 C T CSGALNACT2 Missense_Mutation p.A507V 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 10 45642860 45642860 G A RP11-445N18.7 RNA 0.12 TCGA-D3-A8GB-06 10 46272749 46272749 C T FAM21C Missense_Mutation p.P724L 0.11 deleterious(0.03) possibly_damaging(0.853) TCGA-D3-A8GB-06 10 49431202 49431202 C T FRMPD2 Missense_Mutation p.R427K 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GB-06 10 49482693 49482693 C T FRMPD2 5'UTR 0.12 TCGA-D3-A8GB-06 10 5009205 5009205 C T AKR1C1 Silent p.L113L 0.19 TCGA-D3-A8GB-06 10 50946281 50946281 C T OGDHL Missense_Mutation p.E783K 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 10 51748552 51748552 C T AGAP6 Missense_Mutation p.P26L 0.13 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-D3-A8GB-06 10 54032170 54032170 G A PRKG1 Silent p.K444K 0.09 TCGA-D3-A8GB-06 10 55582867 55582867 G A PCDH15 Missense_Mutation p.S1542L 0.18 tolerated_low_confidence(0.54) benign(0.002) TCGA-D3-A8GB-06 10 5950894 5950894 C T FBXO18 Missense_Mutation p.P305S 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 10 5950895 5950895 C T FBXO18 Missense_Mutation p.P305L 0.13 deleterious(0.03) possibly_damaging(0.86) TCGA-D3-A8GB-06 10 6067926 6067926 C T IL2RA Missense_Mutation p.E43K 0.11 tolerated(0.99) benign(0.005) TCGA-D3-A8GB-06 10 61848036 61848036 C T ANK3 Missense_Mutation p.V1137I 0.18 probably_damaging(0.992) TCGA-D3-A8GB-06 10 70056113 70056113 A T PBLD Missense_Mutation p.F65I 0.20 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 10 71332752 71332752 C T NEUROG3 Silent p.E16E 0.13 TCGA-D3-A8GB-06 10 73405653 73405653 G A CDH23 Silent p.P402P 0.21 TCGA-D3-A8GB-06 10 75335277 75335277 G A USP54 Missense_Mutation p.A47V 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GB-06 10 75394429 75394429 G A MYOZ1 Silent p.F105F 0.18 TCGA-D3-A8GB-06 10 79595540 79595540 G A DLG5 Silent p.A526A 0.21 TCGA-D3-A8GB-06 10 79628901 79628901 G A DLG5 Missense_Mutation p.S120F 0.11 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GB-06 10 81915646 81915646 C T ANXA11 Missense_Mutation p.R494Q 0.20 deleterious(0.05) benign(0.145) TCGA-D3-A8GB-06 10 98105706 98105706 G A OPALIN Silent p.L140L 0.11 TCGA-D3-A8GB-06 10 98369528 98369528 G A PIK3AP1 Missense_Mutation p.P704L 0.17 tolerated(0.19) probably_damaging(0.999) TCGA-D3-A8GB-06 10 98369529 98369529 G A PIK3AP1 Missense_Mutation p.P704S 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GB-06 11 101353770 101353770 C T TRPC6 Missense_Mutation p.E474K 0.10 tolerated(0.66) benign(0.232) TCGA-D3-A8GB-06 11 101359823 101359823 G A TRPC6 Missense_Mutation p.H380Y 0.06 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GB-06 11 101374976 101374976 C T TRPC6 Missense_Mutation p.G242S 0.06 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 11 1016473 1016473 G T MUC6 Missense_Mutation p.Q2110K 0.15 benign(0.006) TCGA-D3-A8GB-06 11 1017594 1017594 G A MUC6 Missense_Mutation p.S1736F 0.04 unknown(0) TCGA-D3-A8GB-06 11 101833974 101833974 C T KIAA1377 Silent p.I736I 0.09 TCGA-D3-A8GB-06 11 102465422 102465422 G A MMP20 Silent p.F340F 0.06 TCGA-D3-A8GB-06 11 102647101 102647101 G A MMP10 Missense_Mutation p.S281L 0.10 tolerated(0.35) benign(0) TCGA-D3-A8GB-06 11 102668132 102668132 C T MMP1 Missense_Mutation p.E69K 0.49 tolerated(1) benign(0.003) TCGA-D3-A8GB-06 11 102711187 102711187 C T MMP3 Missense_Mutation p.D255N 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 11 102826178 102826178 G A MMP13 Silent p.I55I 0.09 TCGA-D3-A8GB-06 11 10327355 10327355 G A ADM Intron 0.18 TCGA-D3-A8GB-06 11 103907613 103907613 C T PDGFD Intron 0.08 TCGA-D3-A8GB-06 11 103908634 103908634 C A DDI1 Missense_Mutation p.P362T 0.05 tolerated(0.06) possibly_damaging(0.453) TCGA-D3-A8GB-06 11 104905244 104905244 C T CASP1 Intron 0.12 TCGA-D3-A8GB-06 11 105924114 105924114 C T KBTBD3 Nonsense_Mutation p.W434* 0.10 TCGA-D3-A8GB-06 11 105962046 105962046 C T AASDHPPT Missense_Mutation p.L179F 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 11 112014327 112014327 C T IL18 Missense_Mutation p.E192K 0.17 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GB-06 11 112104340 112104340 C T PTS 3'UTR 0.20 TCGA-D3-A8GB-06 11 113860242 113860242 G A HTR3A Silent p.P436P 0.13 TCGA-D3-A8GB-06 11 114569199 114569199 C T NXPE2 Silent p.L189L 0.12 TCGA-D3-A8GB-06 11 117299104 117299104 C T DSCAML1 Silent p.G2094G 0.14 TCGA-D3-A8GB-06 11 118037715 118037715 C T SCN2B Missense_Mutation p.V179M 0.15 deleterious(0) possibly_damaging(0.743) TCGA-D3-A8GB-06 11 121000698 121000698 C T TECTA Nonsense_Mutation p.R907* 0.20 TCGA-D3-A8GB-06 11 123601395 123601395 G A ZNF202 Nonsense_Mutation p.R68* 0.17 TCGA-D3-A8GB-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.21 deleterious(0) benign(0.398) TCGA-D3-A8GB-06 11 129734651 129734651 G A NFRKB Missense_Mutation p.P1315L 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GB-06 11 1464584 1464584 G A BRSK2 Missense_Mutation p.R241Q 0.14 deleterious(0.03) possibly_damaging(0.822) TCGA-D3-A8GB-06 11 14808086 14808086 C T PDE3B Missense_Mutation p.S378F 0.12 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GB-06 11 17519802 17519802 C T USH1C Silent p.G799G 0.09 TCGA-D3-A8GB-06 11 17523029 17523029 C T USH1C Silent p.K760K 0.12 TCGA-D3-A8GB-06 11 20639373 20639373 C T SLC6A5 Silent p.F401F 0.11 TCGA-D3-A8GB-06 11 30032887 30032887 G A KCNA4 Missense_Mutation p.R447C 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 11 31312327 31312327 C T DCDC1 Missense_Mutation p.R276Q 0.16 tolerated(0.77) benign(0.007) TCGA-D3-A8GB-06 11 33076231 33076231 G A TCP11L1 Missense_Mutation p.G86R 0.10 tolerated(0.42) benign(0.062) TCGA-D3-A8GB-06 11 33076232 33076232 G A TCP11L1 Missense_Mutation p.G86E 0.09 tolerated(1) possibly_damaging(0.673) TCGA-D3-A8GB-06 11 34155898 34155898 C T NAT10 Silent p.S589S 0.13 TCGA-D3-A8GB-06 11 36595592 36595592 C T RAG1 Silent p.A246A 0.18 TCGA-D3-A8GB-06 11 4080610 4080610 C T STIM1 Silent p.L199L 0.18 TCGA-D3-A8GB-06 11 43283978 43283978 C T HNRNPKP3 RNA 0.20 TCGA-D3-A8GB-06 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.12 TCGA-D3-A8GB-06 11 47196609 47196609 G A ARFGAP2 Missense_Mutation p.S146F 0.16 deleterious(0) possibly_damaging(0.635) TCGA-D3-A8GB-06 11 47282865 47282865 C T NR1H3 Silent p.S191S 0.23 TCGA-D3-A8GB-06 11 4869703 4869703 G A OR51S1 Nonsense_Mutation p.Q246* 0.13 TCGA-D3-A8GB-06 11 49168421 49168421 C T FOLH1 Missense_Mutation p.D714N 0.15 deleterious(0.02) benign(0.212) TCGA-D3-A8GB-06 11 4945336 4945336 G A OR51G1 Silent p.S78S 0.12 TCGA-D3-A8GB-06 11 51412124 51412124 G A OR4A5 Missense_Mutation p.S91F 0.10 deleterious_low_confidence(0.02) benign(0.295) TCGA-D3-A8GB-06 11 55340049 55340049 G A OR4C16 Missense_Mutation p.G149E 0.17 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 11 55655665 55655665 C T TRIM51 Missense_Mutation p.S222F 0.14 deleterious(0) benign(0.057) TCGA-D3-A8GB-06 11 55655666 55655666 C T TRIM51 Silent p.S222S 0.14 TCGA-D3-A8GB-06 11 55872656 55872656 G A OR8H2 Missense_Mutation p.M46I 0.14 deleterious(0.05) probably_damaging(0.911) TCGA-D3-A8GB-06 11 55872918 55872918 G A OR8H2 Missense_Mutation p.V134I 0.13 tolerated(0.1) benign(0.02) TCGA-D3-A8GB-06 11 56344856 56344856 G A OR5M10 Silent p.F114F 0.19 TCGA-D3-A8GB-06 11 57382064 57382064 G A SERPING1 3'UTR 0.24 TCGA-D3-A8GB-06 11 57886110 57886110 C T OR9I1 Silent p.E269E 0.21 TCGA-D3-A8GB-06 11 58318643 58318643 G A LPXN Silent p.S132S 0.08 TCGA-D3-A8GB-06 11 58391911 58391911 C T CNTF Silent p.I173I 0.15 TCGA-D3-A8GB-06 11 58601948 58601948 G A GLYATL2 Missense_Mutation p.P280L 0.09 tolerated(0.12) benign(0.019) TCGA-D3-A8GB-06 11 5878930 5878930 C T OR52E8 Translation_Start_Site p.M1? 0.16 tolerated_low_confidence(0.28) benign(0) TCGA-D3-A8GB-06 11 59225372 59225372 G A OR4D6 Nonsense_Mutation p.W313* 0.17 TCGA-D3-A8GB-06 11 59282679 59282679 C T OR4D9 Silent p.V98V 0.14 TCGA-D3-A8GB-06 11 6007713 6007713 G A OR52L1 Missense_Mutation p.H150Y 0.16 tolerated(0.49) benign(0.012) TCGA-D3-A8GB-06 11 60739354 60739354 G A CD6 Missense_Mutation p.G6E 0.13 tolerated(0.05) benign(0.003) TCGA-D3-A8GB-06 11 61291411 61291411 C T SYT7 Silent p.G340G 0.15 TCGA-D3-A8GB-06 11 62381324 62381324 G A ROM1 Missense_Mutation p.G191S 0.14 tolerated(1) benign(0.005) TCGA-D3-A8GB-06 11 62381325 62381325 G A ROM1 Missense_Mutation p.G191D 0.14 deleterious(0.01) benign(0.129) TCGA-D3-A8GB-06 11 62677837 62677837 G A CHRM1 Missense_Mutation p.P246S 0.17 tolerated(0.36) benign(0) TCGA-D3-A8GB-06 11 63743726 63743726 C T COX8A Silent p.F48F 0.12 TCGA-D3-A8GB-06 11 64496422 64496422 G A RASGRP2 Missense_Mutation p.P562S 0.12 tolerated(0.07) benign(0) TCGA-D3-A8GB-06 11 64698931 64698931 C T PPP2R5B Silent p.F305F 0.15 TCGA-D3-A8GB-06 11 64889308 64889308 G A FAU Intron 0.21 TCGA-D3-A8GB-06 11 65360896 65360896 C T KCNK7 Intron 0.26 TCGA-D3-A8GB-06 11 65360897 65360897 C T KCNK7 Intron 0.22 TCGA-D3-A8GB-06 11 66203394 66203394 C T MRPL11 3'UTR 0.70 TCGA-D3-A8GB-06 11 66357872 66357872 G A CCDC87 3'UTR 0.04 TCGA-D3-A8GB-06 11 66368013 66368013 C T CCS Missense_Mutation p.S161F 0.06 deleterious(0.01) benign(0.023) TCGA-D3-A8GB-06 11 66392187 66392187 C T RBM14 Silent p.S280S 0.04 TCGA-D3-A8GB-06 11 66393119 66393119 C T RBM14 Missense_Mutation p.P591L 0.08 tolerated(0.28) unknown(0) TCGA-D3-A8GB-06 11 66458992 66458992 C T SPTBN2 Silent p.K1776K 0.06 TCGA-D3-A8GB-06 11 66461725 66461725 G A SPTBN2 Missense_Mutation p.S1463L 0.71 tolerated(0.11) benign(0.007) TCGA-D3-A8GB-06 11 66631391 66631391 C A PC Missense_Mutation p.D408Y 0.67 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 11 66631392 66631392 C T PC Silent p.L407L 0.66 TCGA-D3-A8GB-06 11 67266140 67266140 C T PITPNM1 Missense_Mutation p.A471T 0.08 deleterious(0.04) benign(0.131) TCGA-D3-A8GB-06 11 67269857 67269857 G A PITPNM1 Silent p.F107F 0.05 TCGA-D3-A8GB-06 11 6898072 6898072 G A OR10A4 Missense_Mutation p.R65K 0.14 tolerated(0.79) benign(0.053) TCGA-D3-A8GB-06 11 6898825 6898825 G A OR10A4 Silent p.%3D 0.21 TCGA-D3-A8GB-06 11 69063375 69063375 G A MYEOV Missense_Mutation p.G153E 0.07 tolerated_low_confidence(0.73) benign(0.001) TCGA-D3-A8GB-06 11 69063376 69063376 G A MYEOV Silent p.G153G 0.07 TCGA-D3-A8GB-06 11 69625430 69625430 G A FGF3 Silent p.I121I 0.05 TCGA-D3-A8GB-06 11 70007349 70007349 C T ANO1 Missense_Mutation p.P554L 0.08 tolerated(0.07) probably_damaging(1) TCGA-D3-A8GB-06 11 70333107 70333107 C T SHANK2 Silent p.R1098R 0.07 TCGA-D3-A8GB-06 11 7064040 7064040 C T NLRP14 Silent p.F261F 0.19 TCGA-D3-A8GB-06 11 71249483 71249483 G A KRTAP5-8 Missense_Mutation p.G128S 0.09 tolerated_low_confidence(0.89) unknown(0) TCGA-D3-A8GB-06 11 71276880 71276880 G A KRTAP5-10 Missense_Mutation p.G83S 0.07 unknown(0) TCGA-D3-A8GB-06 11 71806163 71806163 G A LRTOMT Intron 0.07 TCGA-D3-A8GB-06 11 71806164 71806164 G A LRTOMT Intron 0.07 TCGA-D3-A8GB-06 11 71821587 71821587 C T ANAPC15 Intron 0.09 TCGA-D3-A8GB-06 11 71903349 71903349 G A FOLR1 Silent p.K44K 0.09 TCGA-D3-A8GB-06 11 72466085 72466085 G A STARD10 Missense_Mutation p.P245S 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A8GB-06 11 72540025 72540025 C T ATG16L2 Missense_Mutation p.H590Y 0.06 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 11 72945146 72945146 C T P2RY2 5'UTR 0.08 TCGA-D3-A8GB-06 11 72946333 72946333 C T P2RY2 Silent p.L377L 0.05 TCGA-D3-A8GB-06 11 73021579 73021579 C T ARHGEF17 Silent p.S632S 0.07 TCGA-D3-A8GB-06 11 73021580 73021580 C T ARHGEF17 Nonsense_Mutation p.Q633* 0.07 TCGA-D3-A8GB-06 11 73589827 73589827 G A PAAF1 Silent p.K17K 0.06 TCGA-D3-A8GB-06 11 73589834 73589834 G A PAAF1 Missense_Mutation p.G20R 0.06 deleterious(0.03) possibly_damaging(0.669) TCGA-D3-A8GB-06 11 74875046 74875046 G A SLCO2B1 Silent p.Q62Q 0.20 TCGA-D3-A8GB-06 11 74876891 74876891 C T SLCO2B1 Silent p.P115P 0.08 TCGA-D3-A8GB-06 11 74977118 74977118 G A ARRB1 3'UTR 0.11 TCGA-D3-A8GB-06 11 75442280 75442280 C T MOGAT2 Silent p.A318A 0.05 TCGA-D3-A8GB-06 11 77412050 77412050 G A RSF1 Missense_Mutation p.R742W 0.06 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GB-06 11 77775041 77775041 G A THRSP Silent p.R38R 0.08 TCGA-D3-A8GB-06 11 7949879 7949879 C T OR10A6 Missense_Mutation p.E111K 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GB-06 11 85445655 85445655 C T SYTL2 Silent p.R238R 0.10 TCGA-D3-A8GB-06 11 86098711 86098711 C T CCDC81 Missense_Mutation p.P99S 0.13 tolerated(0.15) benign(0.233) TCGA-D3-A8GB-06 11 92577341 92577341 G A FAT3 Missense_Mutation p.G3603E 0.18 probably_damaging(1) TCGA-D3-A8GB-06 11 99690302 99690302 C T CNTN5 Missense_Mutation p.S28F 0.06 deleterious_low_confidence(0.01) benign(0.054) TCGA-D3-A8GB-06 12 101598313 101598313 G A SLC5A8 Missense_Mutation p.R128C 0.08 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 12 103246653 103246653 C T PAH Missense_Mutation p.R261Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 12 104393247 104393247 G A GLT8D2 Silent p.I110I 0.21 TCGA-D3-A8GB-06 12 10531305 10531305 C T KLRK1 Splice_Site p.X93_splice 0.14 TCGA-D3-A8GB-06 12 109614057 109614057 C T ACACB Missense_Mutation p.L476F 0.15 tolerated(0.08) benign(0.033) TCGA-D3-A8GB-06 12 10978319 10978319 A T TAS2R10 Missense_Mutation p.F184I 0.20 tolerated(0.15) benign(0.015) TCGA-D3-A8GB-06 12 110475289 110475289 G A ANKRD13A Nonsense_Mutation p.W568* 0.09 TCGA-D3-A8GB-06 12 112082129 112082129 G A BRAP Silent p.A551A 0.15 TCGA-D3-A8GB-06 12 112654876 112654876 C T HECTD4 Missense_Mutation p.G2254S 0.16 benign(0.218) TCGA-D3-A8GB-06 12 114296632 114296632 G A RBM19 Silent p.F876F 0.10 TCGA-D3-A8GB-06 12 11461219 11461219 C T PRB4 Missense_Mutation p.G233E 0.08 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GB-06 12 11461220 11461220 C T PRB4 Missense_Mutation p.G233R 0.08 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GB-06 12 117768311 117768311 C T NOS1 Silent p.A188A 0.18 TCGA-D3-A8GB-06 12 117996337 117996337 C T KSR2 Missense_Mutation p.C456Y 0.16 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GB-06 12 118627757 118627757 G A TAOK3 Intron 0.10 TCGA-D3-A8GB-06 12 118627758 118627758 G A TAOK3 Intron 0.10 TCGA-D3-A8GB-06 12 119966520 119966520 A T CCDC60 Nonsense_Mutation p.K444* 0.13 TCGA-D3-A8GB-06 12 120884092 120884092 G A TRIAP1 Silent p.L28L 0.15 TCGA-D3-A8GB-06 12 121088400 121088400 C T CABP1 Intron 0.16 TCGA-D3-A8GB-06 12 121790239 121790239 A C ANAPC5 5'UTR 0.24 TCGA-D3-A8GB-06 12 122691447 122691447 G A B3GNT4 Missense_Mutation p.G217R 0.11 deleterious(0.04) possibly_damaging(0.856) TCGA-D3-A8GB-06 12 122691448 122691448 G A B3GNT4 Missense_Mutation p.G217E 0.11 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GB-06 12 12277538 12277538 C T LRP6 Missense_Mutation p.G1503E 0.07 tolerated(0.28) possibly_damaging(0.638) TCGA-D3-A8GB-06 12 123461441 123461441 C T OGFOD2 Silent p.F49F 0.09 TCGA-D3-A8GB-06 12 124116961 124116961 C T EIF2B1 Missense_Mutation p.E16K 0.16 tolerated(0.36) benign(0.001) TCGA-D3-A8GB-06 12 124399474 124399474 C T DNAH10 Silent p.F3432F 0.24 TCGA-D3-A8GB-06 12 124416222 124416222 G A DNAH10 Missense_Mutation p.G4201D 0.12 benign(0.004) TCGA-D3-A8GB-06 12 125441572 125441572 T A DHX37 Intron 0.23 TCGA-D3-A8GB-06 12 133198539 133198539 A C P2RX2 Missense_Mutation p.K492T 0.16 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-D3-A8GB-06 12 133244982 133244982 G A POLE Silent p.S711S 0.16 TCGA-D3-A8GB-06 12 21196465 21196465 G A SLCO1B7 Missense_Mutation p.A262T 0.11 tolerated(0.42) benign(0.012) TCGA-D3-A8GB-06 12 2719811 2719811 C T CACNA1C Silent p.F1241F 0.11 TCGA-D3-A8GB-06 12 42864122 42864122 G A PRICKLE1 Missense_Mutation p.P58S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 12 43769915 43769915 C T ADAMTS20 Missense_Mutation p.E1753K 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 12 43769916 43769916 C T ADAMTS20 Silent p.K1752K 0.26 TCGA-D3-A8GB-06 12 4481786 4481786 C T FGF23 Missense_Mutation p.D97N 0.21 tolerated(0.06) probably_damaging(0.995) TCGA-D3-A8GB-06 12 46760923 46760923 A T SLC38A2 Nonsense_Mutation p.Y139* 0.22 TCGA-D3-A8GB-06 12 47186920 47186920 C T SLC38A4 5'UTR 0.08 TCGA-D3-A8GB-06 12 48188637 48188637 G A HDAC7 Missense_Mutation p.P455L 0.11 tolerated(0.23) benign(0.001) TCGA-D3-A8GB-06 12 48188638 48188638 G A HDAC7 Missense_Mutation p.P455S 0.11 tolerated(0.42) benign(0.016) TCGA-D3-A8GB-06 12 48477459 48477459 G A SENP1 Missense_Mutation p.P156L 0.21 tolerated(0.07) benign(0.022) TCGA-D3-A8GB-06 12 48477460 48477460 G A SENP1 Missense_Mutation p.P156S 0.21 tolerated(0.75) benign(0.002) TCGA-D3-A8GB-06 12 48962299 48962299 C T LALBA Splice_Site p.X123_splice 0.17 TCGA-D3-A8GB-06 12 48962300 48962300 C T LALBA Nonsense_Mutation p.W123* 0.16 TCGA-D3-A8GB-06 12 4919996 4919996 C T KCNA6 Silent p.F263F 0.15 TCGA-D3-A8GB-06 12 49724203 49724203 C T TROAP Silent p.A525A 0.14 TCGA-D3-A8GB-06 12 49951389 49951389 C T KCNH3 Missense_Mutation p.P969S 0.19 tolerated_low_confidence(0.25) benign(0) TCGA-D3-A8GB-06 12 50366890 50366890 G A AQP6 5'UTR 0.21 TCGA-D3-A8GB-06 12 50367296 50367296 G A AQP6 Missense_Mutation p.G114R 0.15 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GB-06 12 52115432 52115432 G A SCN8A Missense_Mutation p.E580K 0.24 tolerated(0.09) probably_damaging(0.984) TCGA-D3-A8GB-06 12 52827739 52827739 G A KRT75 Missense_Mutation p.P117L 0.10 deleterious(0.02) possibly_damaging(0.642) TCGA-D3-A8GB-06 12 53072495 53072495 C T KRT1 Missense_Mutation p.E213K 0.18 tolerated(0.22) probably_damaging(0.998) TCGA-D3-A8GB-06 12 53073667 53073667 T A KRT1 Missense_Mutation p.T156S 0.12 tolerated(0.09) benign(0.061) TCGA-D3-A8GB-06 12 53186124 53186124 G A KRT3 Missense_Mutation p.R363C 0.14 deleterious(0.01) possibly_damaging(0.478) TCGA-D3-A8GB-06 12 53686620 53686620 C T ESPL1 Silent p.F2009F 0.15 TCGA-D3-A8GB-06 12 54765484 54765484 C T ZNF385A Missense_Mutation p.G146E 0.10 tolerated(0.27) benign(0.005) TCGA-D3-A8GB-06 12 54765485 54765485 C T ZNF385A Missense_Mutation p.G146R 0.10 tolerated(0.19) benign(0.092) TCGA-D3-A8GB-06 12 55356395 55356395 C T TESPA1 Silent p.E429E 0.18 TCGA-D3-A8GB-06 12 56079000 56079000 C T ITGA7 Missense_Mutation p.E1090K 0.17 deleterious(0.04) probably_damaging(0.927) TCGA-D3-A8GB-06 12 56120000 56120000 G A CD63 Missense_Mutation p.P158S 0.14 tolerated(0.76) benign(0.004) TCGA-D3-A8GB-06 12 56231032 56231032 G A MMP19 Nonsense_Mutation p.R439* 0.15 TCGA-D3-A8GB-06 12 56629046 56629046 G A SLC39A5 Missense_Mutation p.G247D 0.17 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GB-06 12 56848037 56848037 C T MIP Splice_Site p.X120_splice 0.16 TCGA-D3-A8GB-06 12 57111328 57111328 G A NACA Intron 0.16 TCGA-D3-A8GB-06 12 57883087 57883087 C T MARS Missense_Mutation p.L80F 0.09 tolerated(0.2) benign(0.008) TCGA-D3-A8GB-06 12 58007215 58007215 C T ARHGEF25 Intron 0.08 TCGA-D3-A8GB-06 12 58009016 58009016 C T ARHGEF25 Intron 0.15 TCGA-D3-A8GB-06 12 58009017 58009017 C T ARHGEF25 Intron 0.15 TCGA-D3-A8GB-06 12 6708999 6708999 G A CHD4 Silent p.H474H 0.21 TCGA-D3-A8GB-06 12 72068020 72068020 C T THAP2 Missense_Mutation p.R37C 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A8GB-06 12 75807403 75807403 T C GLIPR1L2 Missense_Mutation p.V169A 0.14 deleterious(0) probably_damaging(0.937) TCGA-D3-A8GB-06 12 7651494 7651494 G A CD163 Missense_Mutation p.H250Y 0.11 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 12 85438587 85438587 G A LRRIQ1 Silent p.K112K 0.09 TCGA-D3-A8GB-06 12 8612214 8612214 G A CLEC6A Missense_Mutation p.G48D 0.24 tolerated(0.83) benign(0.007) TCGA-D3-A8GB-06 12 8671713 8671713 G A CLEC4D Missense_Mutation p.G114E 0.16 tolerated(0.26) benign(0.186) TCGA-D3-A8GB-06 12 91502428 91502428 C T LUM Missense_Mutation p.R110K 0.16 tolerated(1) benign(0.004) TCGA-D3-A8GB-06 13 111156306 111156306 G A COL4A2 Silent p.G1417G 0.30 TCGA-D3-A8GB-06 13 19753482 19753482 G A TUBA3C Silent p.V75V 0.06 TCGA-D3-A8GB-06 13 23910857 23910857 A T SACS Missense_Mutation p.F2386L 0.17 probably_damaging(0.983) TCGA-D3-A8GB-06 13 23928012 23928012 G A SACS Silent p.S699S 0.16 TCGA-D3-A8GB-06 13 25399840 25399840 C T RNF17 Silent p.L725L 0.18 TCGA-D3-A8GB-06 13 27241727 27241727 G A WASF3 Silent p.K114K 0.12 TCGA-D3-A8GB-06 13 29008027 29008027 G A FLT1 Missense_Mutation p.L248F 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 13 31540449 31540449 A G TEX26 Missense_Mutation p.Q187R 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A8GB-06 13 36229114 36229114 G A NBEA Missense_Mutation p.D2699N 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 13 46577466 46577466 G A ZC3H13 Missense_Mutation p.S251L 0.20 unknown(0) TCGA-D3-A8GB-06 13 74387137 74387137 C T KLF12 Intron 0.29 TCGA-D3-A8GB-06 13 99947380 99947380 T C GPR183 Silent p.E340E 0.19 TCGA-D3-A8GB-06 14 101201089 101201089 C T DLK1 Silent p.N336N 0.13 TCGA-D3-A8GB-06 14 101506599 101506599 C T MIR654 RNA 0.12 TCGA-D3-A8GB-06 14 102028694 102028694 T G DIO3 Silent p.T287T 0.12 TCGA-D3-A8GB-06 14 104471658 104471658 G A TDRD9 Missense_Mutation p.M543I 0.11 deleterious(0.05) benign(0.035) TCGA-D3-A8GB-06 14 104471659 104471659 G A TDRD9 Missense_Mutation p.G544S 0.11 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 14 105926780 105926780 C T MTA1 Nonsense_Mutation p.R247* 0.20 TCGA-D3-A8GB-06 14 106208267 106208267 G A IGHG1 Silent p.L211L 0.09 TCGA-D3-A8GB-06 14 106331449 106331449 G A IGHJ2 Silent p.F4F 0.27 TCGA-D3-A8GB-06 14 106518568 106518568 C T IGHV3-7 Silent p.G61G 0.16 TCGA-D3-A8GB-06 14 106963032 106963032 G A IGHV1-45 Nonsense_Mutation p.Q84* 0.13 TCGA-D3-A8GB-06 14 20388956 20388956 G A OR4K5 Missense_Mutation p.G64E 0.15 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GB-06 14 20612527 20612527 C T OR4N5 Silent p.F211F 0.14 TCGA-D3-A8GB-06 14 21109309 21109309 A C OR6S1 Missense_Mutation p.F181C 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 14 21526389 21526389 G A RNASE8 Missense_Mutation p.G113E 0.15 tolerated(0.1) possibly_damaging(0.521) TCGA-D3-A8GB-06 14 21526390 21526390 G A RNASE8 Silent p.G113G 0.15 TCGA-D3-A8GB-06 14 21558577 21558577 C T ZNF219 3'UTR 0.50 TCGA-D3-A8GB-06 14 21558578 21558578 C T ZNF219 3'UTR 0.50 TCGA-D3-A8GB-06 14 22788969 22788969 C T TRAV41 Missense_Mutation p.P61L 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A8GB-06 14 23239687 23239687 C T OXA1L Silent p.S289S 0.17 TCGA-D3-A8GB-06 14 23346602 23346602 G A LRP10 Missense_Mutation p.G670R 0.17 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A8GB-06 14 23883308 23883308 C T MYH7 Missense_Mutation p.E1855K 0.17 deleterious(0) benign(0.26) TCGA-D3-A8GB-06 14 24518016 24518016 G A LRRC16B 5'Flank 0.05 TCGA-D3-A8GB-06 14 35565970 35565970 C T PPP2R3C Missense_Mutation p.G236E 0.22 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GB-06 14 35782263 35782263 G A PSMA6 Missense_Mutation p.E196K 0.17 deleterious(0.05) benign(0.123) TCGA-D3-A8GB-06 14 36768304 36768304 G A MBIP Silent p.T340T 0.14 TCGA-D3-A8GB-06 14 38678774 38678774 G A SSTR1 Silent p.L60L 0.15 TCGA-D3-A8GB-06 14 47342695 47342695 C T MDGA2 Missense_Mutation p.G898E 0.12 deleterious(0.01) possibly_damaging(0.79) TCGA-D3-A8GB-06 14 51716478 51716478 C T TMX1 Missense_Mutation p.P220L 0.17 tolerated(0.07) benign(0.013) TCGA-D3-A8GB-06 14 55878327 55878327 G A ATG14 Missense_Mutation p.R72W 0.18 deleterious(0.01) benign(0.243) TCGA-D3-A8GB-06 14 64416564 64416564 C A SYNE2 Missense_Mutation p.L144I 0.16 benign(0.123) TCGA-D3-A8GB-06 14 67346738 67346738 G A GPHN Missense_Mutation p.G126S 0.08 deleterious(0.04) benign(0.124) TCGA-D3-A8GB-06 14 68040100 68040100 C T PLEKHH1 Silent p.S612S 0.15 TCGA-D3-A8GB-06 14 70633746 70633746 G A SLC8A3 Missense_Mutation p.S465F 0.14 deleterious(0.01) possibly_damaging(0.739) TCGA-D3-A8GB-06 14 71215618 71215618 G A MAP3K9 Silent p.S418S 0.15 TCGA-D3-A8GB-06 14 74876168 74876168 C T SYNDIG1L Missense_Mutation p.D94N 0.10 tolerated(0.71) benign(0) TCGA-D3-A8GB-06 14 75329636 75329636 C T PROX2 Intron 0.18 TCGA-D3-A8GB-06 14 75485624 75485624 G A MLH3 Silent p.L1384L 0.09 TCGA-D3-A8GB-06 14 75618794 75618794 C T TMED10 Missense_Mutation p.G93E 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GB-06 14 77492274 77492274 G A IRF2BPL Missense_Mutation p.P621L 0.26 tolerated(0.11) unknown(0) TCGA-D3-A8GB-06 14 79270068 79270068 G A NRXN3 Missense_Mutation p.R344Q 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A8GB-06 14 79454385 79454385 G A NRXN3 Missense_Mutation p.E682K 0.08 tolerated(0.05) benign(0) TCGA-D3-A8GB-06 14 81251256 81251256 G A CEP128 Missense_Mutation p.H732Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GB-06 14 88729836 88729836 G A KCNK10 Missense_Mutation p.P38S 0.18 tolerated_low_confidence(0.1) benign(0.002) TCGA-D3-A8GB-06 14 88940059 88940059 G A PTPN21 Silent p.L867L 0.13 TCGA-D3-A8GB-06 14 92959939 92959939 C T SLC24A4 Silent p.F612F 0.09 TCGA-D3-A8GB-06 14 93125685 93125685 G A RIN3 Missense_Mutation p.V736M 0.07 deleterious(0.04) possibly_damaging(0.459) TCGA-D3-A8GB-06 14 93276689 93276689 G C GOLGA5 Silent p.L361L 0.14 TCGA-D3-A8GB-06 14 94067097 94067097 G A UNC79 Silent p.K1008K 0.15 TCGA-D3-A8GB-06 14 94128967 94128967 T A UNC79 Missense_Mutation p.F2043L 0.12 deleterious(0.01) possibly_damaging(0.85) TCGA-D3-A8GB-06 14 95560471 95560471 G A DICER1 Silent p.F1706F 0.15 TCGA-D3-A8GB-06 14 96707106 96707106 C T BDKRB2 Silent p.F147F 0.18 TCGA-D3-A8GB-06 15 101098951 101098951 G A RNU6-181P 3'Flank 0.27 TCGA-D3-A8GB-06 15 101438359 101438359 G A ALDH1A3 Silent p.K284K 0.10 TCGA-D3-A8GB-06 15 22369235 22369235 C T OR4M2 Silent p.F220F 0.07 TCGA-D3-A8GB-06 15 23438963 23438963 G A RN7SL106P 5'Flank 0.20 TCGA-D3-A8GB-06 15 25227177 25227177 G A SNRPN 3'Flank 0.12 TCGA-D3-A8GB-06 15 25336962 25336962 C T SNORD116-23 RNA 0.13 TCGA-D3-A8GB-06 15 25615734 25615734 G A UBE3A Silent p.I532I 0.10 TCGA-D3-A8GB-06 15 34111993 34111993 C T RYR3 Silent p.S3581S 0.09 TCGA-D3-A8GB-06 15 40093946 40093946 G A GPR176 Missense_Mutation p.S312F 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 15 42127070 42127070 A G JMJD7-PLA2G4B Missense_Mutation p.K66R 0.18 deleterious_low_confidence(0) benign(0.039) TCGA-D3-A8GB-06 15 42162686 42162686 G A SPTBN5 Silent p.L1840L 0.18 TCGA-D3-A8GB-06 15 42170625 42170625 C T SPTBN5 Missense_Mutation p.E1129K 0.18 possibly_damaging(0.839) TCGA-D3-A8GB-06 15 42182350 42182350 G A SPTBN5 Silent p.L146L 0.14 TCGA-D3-A8GB-06 15 42281626 42281626 G A PLA2G4E Silent p.I570I 0.17 TCGA-D3-A8GB-06 15 42456603 42456603 G C VPS39 Missense_Mutation p.S660C 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 15 42737141 42737141 T G ZNF106 Silent p.R1059R 0.12 TCGA-D3-A8GB-06 15 49284425 49284425 G A SECISBP2L 3'UTR 0.16 TCGA-D3-A8GB-06 15 49860481 49860481 G A FAM227B Silent p.F236F 0.15 TCGA-D3-A8GB-06 15 50489741 50489741 G A SLC27A2 Missense_Mutation p.D175N 0.22 tolerated(0.25) benign(0.082) TCGA-D3-A8GB-06 15 52536615 52536615 G A MYO5C Silent p.F776F 0.15 TCGA-D3-A8GB-06 15 52874447 52874447 G A FAM214A Silent p.F1045F 0.16 TCGA-D3-A8GB-06 15 52902242 52902242 T C FAM214A Missense_Mutation p.E290G 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-D3-A8GB-06 15 54307044 54307044 C T UNC13C Silent p.L648L 0.16 TCGA-D3-A8GB-06 15 56388587 56388587 G T RFX7 Missense_Mutation p.P447T 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GB-06 15 58006932 58006932 C T POLR2M 3'UTR 0.19 TCGA-D3-A8GB-06 15 63915942 63915942 G A HERC1 Silent p.T4531T 0.11 TCGA-D3-A8GB-06 15 63955381 63955381 C T HERC1 Silent p.Q2901Q 0.22 TCGA-D3-A8GB-06 15 64966528 64966528 C T ZNF609 Missense_Mutation p.P492L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 15 71124348 71124348 G A LARP6 3'UTR 0.36 TCGA-D3-A8GB-06 15 72154904 72154904 G A MYO9A Missense_Mutation p.P2010S 0.11 deleterious(0.02) possibly_damaging(0.84) TCGA-D3-A8GB-06 15 74630423 74630423 C T CYP11A1 Missense_Mutation p.E486K 0.07 deleterious(0.03) benign(0.424) TCGA-D3-A8GB-06 15 75248298 75248298 G A RPP25 3'UTR 0.40 TCGA-D3-A8GB-06 15 75942353 75942353 G A SNX33 Missense_Mutation p.E304K 0.12 deleterious(0.04) benign(0.385) TCGA-D3-A8GB-06 15 76797287 76797287 G A SCAPER Missense_Mutation p.A956V 0.22 tolerated(1) benign(0.001) TCGA-D3-A8GB-06 15 78921819 78921819 G A CHRNB4 Silent p.F276F 0.25 TCGA-D3-A8GB-06 15 82519893 82519893 G A EFTUD1 Missense_Mutation p.P364S 0.07 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GB-06 15 82564057 82564057 C T FAM154B Missense_Mutation p.S56L 0.18 tolerated(0.19) benign(0.041) TCGA-D3-A8GB-06 15 83345390 83345390 C T AP3B2 Splice_Site p.X497_splice 0.24 TCGA-D3-A8GB-06 15 83523433 83523433 G A HOMER2 Missense_Mutation p.S216F 0.20 tolerated(0.05) benign(0.002) TCGA-D3-A8GB-06 15 84373239 84373239 C T ADAMTSL3 Silent p.L56L 0.25 TCGA-D3-A8GB-06 15 88680758 88680758 C T NTRK3 Missense_Mutation p.D167N 0.13 tolerated(0.59) benign(0.002) TCGA-D3-A8GB-06 15 89843172 89843172 G A FANCI Silent p.K926K 0.21 TCGA-D3-A8GB-06 15 90414749 90414749 G A C15orf38-AP3S2 Silent p.F302F 0.28 TCGA-D3-A8GB-06 15 91491393 91491393 C T UNC45A Silent p.I539I 0.10 TCGA-D3-A8GB-06 15 93524103 93524103 C T CHD2 Missense_Mutation p.L979F 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 16 10851831 10851831 C T NUBP1 Missense_Mutation p.R185W 0.17 deleterious(0) possibly_damaging(0.67) TCGA-D3-A8GB-06 16 11945414 11945414 G A RSL1D1 5'UTR 0.19 TCGA-D3-A8GB-06 16 1265297 1265297 G A CACNA1H Missense_Mutation p.E1699K 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 16 1270327 1270327 T G CACNA1H Missense_Mutation p.L2132R 0.15 deleterious(0.01) possibly_damaging(0.723) TCGA-D3-A8GB-06 16 16302616 16302616 C T ABCC6 Missense_Mutation p.E255K 0.12 tolerated(0.14) benign(0.043) TCGA-D3-A8GB-06 16 19468061 19468061 C T TMC5 Intron 0.12 TCGA-D3-A8GB-06 16 202990 202990 G A HBZ Missense_Mutation p.E28K 0.20 deleterious(0.01) benign(0.28) TCGA-D3-A8GB-06 16 21123021 21123021 G A DNAH3 Silent p.L675L 0.18 TCGA-D3-A8GB-06 16 2159721 2159721 A T PKD1 Missense_Mutation p.F1816Y 0.18 benign(0.047) TCGA-D3-A8GB-06 16 21698852 21698852 C T OTOA Missense_Mutation p.S173F 0.16 deleterious(0.01) probably_damaging(0.93) TCGA-D3-A8GB-06 16 22319513 22319513 C T POLR3E Silent p.H44H 0.12 TCGA-D3-A8GB-06 16 2369687 2369687 G A ABCA3 Silent p.L256L 0.17 TCGA-D3-A8GB-06 16 23711957 23711957 G A ERN2 Silent p.S524S 0.20 TCGA-D3-A8GB-06 16 2373588 2373588 G A ABCA3 Silent p.S183S 0.20 TCGA-D3-A8GB-06 16 24166103 24166103 G A PRKCB Missense_Mutation p.M388I 0.24 deleterious(0.01) benign(0.226) TCGA-D3-A8GB-06 16 24358092 24358092 C T CACNG3 Silent p.F83F 0.17 TCGA-D3-A8GB-06 16 24946949 24946949 G A ARHGAP17 Missense_Mutation p.P579L 0.15 tolerated_low_confidence(0.11) benign(0.069) TCGA-D3-A8GB-06 16 27078317 27078317 C T C16orf82 RNA 0.13 TCGA-D3-A8GB-06 16 27781298 27781298 G A KIAA0556 Silent p.V1364V 0.10 TCGA-D3-A8GB-06 16 2812301 2812301 G A SRRM2 Missense_Mutation p.R591K 0.11 unknown(0) TCGA-D3-A8GB-06 16 28506424 28506424 C T APOBR Missense_Mutation p.S21F 0.27 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GB-06 16 28507336 28507336 G A APOBR Missense_Mutation p.G325E 0.09 tolerated(0.24) probably_damaging(0.969) TCGA-D3-A8GB-06 16 28883197 28883197 C T SH2B1 Missense_Mutation p.P469L 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GB-06 16 29821397 29821397 G A MAZ Splice_Site 0.10 TCGA-D3-A8GB-06 16 30615942 30615942 G A ZNF689 Silent p.F382F 0.25 TCGA-D3-A8GB-06 16 30762560 30762560 G A PHKG2 Missense_Mutation p.E77K 0.12 deleterious(0.02) possibly_damaging(0.632) TCGA-D3-A8GB-06 16 31045634 31045634 C T STX4 Missense_Mutation p.L74F 0.20 tolerated(0.71) probably_damaging(0.938) TCGA-D3-A8GB-06 16 31160819 31160819 G T PRSS36 Missense_Mutation p.A25D 0.09 deleterious(0.05) benign(0.009) TCGA-D3-A8GB-06 16 31393212 31393212 C T ITGAX Missense_Mutation p.P1159L 0.13 tolerated(0.09) possibly_damaging(0.726) TCGA-D3-A8GB-06 16 31497118 31497118 G A SLC5A2 Silent p.T124T 0.17 TCGA-D3-A8GB-06 16 46746689 46746689 C T MYLK3 Splice_Site p.X662_splice 0.08 TCGA-D3-A8GB-06 16 46991096 46991096 G A DNAJA2 Missense_Mutation p.P362S 0.13 tolerated(0.19) benign(0.006) TCGA-D3-A8GB-06 16 48210979 48210979 G A ABCC11 Missense_Mutation p.P1132S 0.22 tolerated(0.07) possibly_damaging(0.601) TCGA-D3-A8GB-06 16 49412440 49412440 G A C16orf78 Silent p.E110E 0.18 TCGA-D3-A8GB-06 16 49672579 49672579 C T ZNF423 Missense_Mutation p.D162N 0.11 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 16 51173526 51173526 C T SALL1 Silent p.Q869Q 0.18 TCGA-D3-A8GB-06 16 57465117 57465117 G A CIAPIN1 Missense_Mutation p.S231F 0.14 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GB-06 16 61687994 61687994 G A CDH8 Silent p.L640L 0.17 TCGA-D3-A8GB-06 16 66426129 66426129 G A CDH5 Missense_Mutation p.G354R 0.11 tolerated(0.16) benign(0.004) TCGA-D3-A8GB-06 16 67199716 67199716 C T HSF4 Silent p.G109G 0.12 TCGA-D3-A8GB-06 16 67199717 67199717 C T HSF4 Missense_Mutation p.R110C 0.11 deleterious(0.02) benign(0.022) TCGA-D3-A8GB-06 16 67288925 67288925 C T SLC9A5 Silent p.A164A 0.10 TCGA-D3-A8GB-06 16 67288926 67288926 C T SLC9A5 Missense_Mutation p.P165S 0.10 tolerated(0.57) benign(0.019) TCGA-D3-A8GB-06 16 67333436 67333436 C T KCTD19 Silent p.G272G 0.14 TCGA-D3-A8GB-06 16 67683366 67683366 C T RLTPR Missense_Mutation p.S588L 0.15 deleterious(0) possibly_damaging(0.468) TCGA-D3-A8GB-06 16 67839362 67839362 C T RANBP10 Missense_Mutation p.E106K 0.10 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 16 70065869 70065869 G A MIR1972-2 3'Flank 0.23 TCGA-D3-A8GB-06 16 70916634 70916634 G A HYDIN Missense_Mutation p.R3382C 0.12 probably_damaging(0.942) TCGA-D3-A8GB-06 16 71392752 71392752 C T CALB2 Silent p.S19S 0.33 TCGA-D3-A8GB-06 16 71482017 71482017 G A ZNF23 Silent p.V637V 0.10 TCGA-D3-A8GB-06 16 77389948 77389948 C T ADAMTS18 Missense_Mutation p.G450E 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 16 80584445 80584445 C T DYNLRB2 Missense_Mutation p.P94L 0.14 deleterious(0.01) benign(0.012) TCGA-D3-A8GB-06 16 81925136 81925136 G A PLCG2 Silent p.V309V 0.21 TCGA-D3-A8GB-06 16 81925137 81925137 G A PLCG2 Missense_Mutation p.D310N 0.21 tolerated(0.54) benign(0.001) TCGA-D3-A8GB-06 16 84256200 84256200 C T KCNG4 Missense_Mutation p.E395K 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A8GB-06 16 84480027 84480027 G A ATP2C2 Silent p.L498L 0.10 TCGA-D3-A8GB-06 16 84778942 84778942 T G USP10 Silent p.A285A 0.21 TCGA-D3-A8GB-06 16 84914140 84914140 G A CRISPLD2 Missense_Mutation p.D419N 0.15 tolerated(0.41) benign(0.012) TCGA-D3-A8GB-06 16 86613228 86613228 C T FOXL1 Missense_Mutation p.A300V 0.19 tolerated(0.14) benign(0.017) TCGA-D3-A8GB-06 16 88901741 88901741 C T GALNS Missense_Mutation p.E260K 0.11 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 16 89764672 89764672 G A SPATA2L Silent p.L115L 0.13 TCGA-D3-A8GB-06 16 89935992 89935992 G A SPIRE2 Silent p.K608K 0.20 TCGA-D3-A8GB-06 16 9858687 9858687 G A GRIN2A Missense_Mutation p.S905F 0.12 deleterious(0) possibly_damaging(0.773) TCGA-D3-A8GB-06 16 9984849 9984849 C T GRIN2A Nonsense_Mutation p.W372* 0.18 TCGA-D3-A8GB-06 17 10398290 10398290 G A MYH1 Silent p.A1808A 0.23 TCGA-D3-A8GB-06 17 10451257 10451257 C T MYH2 Intron 0.15 TCGA-D3-A8GB-06 17 10451258 10451258 C T MYH2 Splice_Site 0.15 TCGA-D3-A8GB-06 17 12608494 12608494 C G MYOCD Missense_Mutation p.N35K 0.16 deleterious(0) benign(0.313) TCGA-D3-A8GB-06 17 12649298 12649298 C T MYOCD Missense_Mutation p.P345L 0.12 deleterious(0.02) benign(0.263) TCGA-D3-A8GB-06 17 15848803 15848803 C T ADORA2B Missense_Mutation p.L81F 0.23 tolerated(0.21) probably_damaging(0.999) TCGA-D3-A8GB-06 17 16004959 16004959 G A NCOR1 Silent p.P765P 0.18 TCGA-D3-A8GB-06 17 16068352 16068352 G A NCOR1 Missense_Mutation p.R187C 0.11 probably_damaging(0.991) TCGA-D3-A8GB-06 17 18052690 18052690 G A MYO15A Missense_Mutation p.E2373K 0.27 unknown(0) TCGA-D3-A8GB-06 17 18052691 18052691 G A MYO15A Splice_Site p.X2373_splice 0.27 TCGA-D3-A8GB-06 17 18678463 18678463 G A FBXW10 Missense_Mutation p.E765K 0.11 tolerated(0.85) benign(0.014) TCGA-D3-A8GB-06 17 19607436 19607436 G A SLC47A2 Missense_Mutation p.A358V 0.21 deleterious(0) possibly_damaging(0.661) TCGA-D3-A8GB-06 17 19641496 19641496 G A ALDH3A1 3'UTR 0.20 TCGA-D3-A8GB-06 17 21825450 21825450 G A FAM27L RNA 0.14 TCGA-D3-A8GB-06 17 26653744 26653744 C T TMEM97 Silent p.L152L 0.12 TCGA-D3-A8GB-06 17 28545258 28545258 C T SLC6A4 Silent p.T192T 0.21 TCGA-D3-A8GB-06 17 29758858 29758858 C T RAB11FIP4 Missense_Mutation p.P63S 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 17 33592444 33592444 C T SLFN5 Missense_Mutation p.P738L 0.18 tolerated(0.07) benign(0.041) TCGA-D3-A8GB-06 17 36093633 36093633 G A HNF1B Silent p.S242S 0.17 TCGA-D3-A8GB-06 17 37360881 37360881 G A RPL19 Missense_Mutation p.E191K 0.08 deleterious(0.04) possibly_damaging(0.871) TCGA-D3-A8GB-06 17 37826441 37826441 C T PNMT Silent p.A216A 0.21 TCGA-D3-A8GB-06 17 37828992 37828992 G A PGAP3 3'UTR 0.19 TCGA-D3-A8GB-06 17 38152518 38152518 C T PSMD3 Missense_Mutation p.S468F 0.11 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GB-06 17 38430202 38430202 C T WIPF2 Silent p.P377P 0.12 TCGA-D3-A8GB-06 17 38557174 38557174 G A TOP2A Silent p.I864I 0.11 TCGA-D3-A8GB-06 17 38955842 38955842 C T KRT28 Missense_Mutation p.D102N 0.12 tolerated(0.06) benign(0.17) TCGA-D3-A8GB-06 17 39019491 39019491 C T KRT12 Silent p.Q400Q 0.19 TCGA-D3-A8GB-06 17 40271267 40271267 G A KAT2A Missense_Mutation p.P357S 0.15 tolerated(0.08) probably_damaging(0.971) TCGA-D3-A8GB-06 17 40271268 40271268 G A KAT2A Silent p.F356F 0.15 TCGA-D3-A8GB-06 17 40330239 40330239 G A KCNH4 Missense_Mutation p.S155F 0.17 tolerated(0.39) benign(0.013) TCGA-D3-A8GB-06 17 40452749 40452749 G A STAT5A Missense_Mutation p.E284K 0.15 deleterious(0.02) possibly_damaging(0.898) TCGA-D3-A8GB-06 17 42474884 42474884 G A GPATCH8 3'UTR 0.22 TCGA-D3-A8GB-06 17 42476100 42476100 G A GPATCH8 Silent p.T1115T 0.18 TCGA-D3-A8GB-06 17 42828490 42828490 C T DBF4B Missense_Mutation p.P573S 0.09 tolerated_low_confidence(0.07) benign(0.009) TCGA-D3-A8GB-06 17 42882678 42882678 C A GJC1 Nonsense_Mutation p.E170* 0.12 TCGA-D3-A8GB-06 17 43215327 43215327 G A ACBD4 Missense_Mutation p.G220E 0.18 tolerated_low_confidence(0.38) benign(0.001) TCGA-D3-A8GB-06 17 43320660 43320660 C T FMNL1 Missense_Mutation p.A729V 0.19 tolerated(0.22) possibly_damaging(0.449) TCGA-D3-A8GB-06 17 44845755 44845755 G A WNT3 Silent p.I333I 0.08 TCGA-D3-A8GB-06 17 44847192 44847192 G A WNT3 Missense_Mutation p.A182V 0.15 deleterious(0.03) benign(0.271) TCGA-D3-A8GB-06 17 45773567 45773567 C T TBKBP1 Missense_Mutation p.P30L 0.20 deleterious(0) benign(0.366) TCGA-D3-A8GB-06 17 45788032 45788032 C T TBKBP1 3'UTR 0.14 TCGA-D3-A8GB-06 17 45822479 45822479 G A TBX21 Missense_Mutation p.R452Q 0.08 tolerated(0.14) probably_damaging(0.978) TCGA-D3-A8GB-06 17 45822480 45822480 G A TBX21 Silent p.R452R 0.08 TCGA-D3-A8GB-06 17 45913835 45913835 G A LRRC46 Missense_Mutation p.E197K 0.10 deleterious(0.03) benign(0.309) TCGA-D3-A8GB-06 17 46654255 46654255 G A HOXB4 Silent p.I195I 0.12 TCGA-D3-A8GB-06 17 46805397 46805397 C T HOXB13 Missense_Mutation p.E187K 0.14 deleterious(0) benign(0.11) TCGA-D3-A8GB-06 17 47241534 47241534 G A B4GALNT2 Missense_Mutation p.R344Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 17 47376106 47376106 G A ZNF652 Missense_Mutation p.P497L 0.16 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GB-06 17 48631642 48631642 C T SPATA20 Missense_Mutation p.S663F 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 17 5049400 5049400 G A USP6 Silent p.Q750Q 0.15 TCGA-D3-A8GB-06 17 51900463 51900463 C T KIF2B Silent p.F23F 0.07 TCGA-D3-A8GB-06 17 56345182 56345182 G A LPO Missense_Mutation p.E656K 0.18 tolerated(0.73) benign(0.001) TCGA-D3-A8GB-06 17 56620273 56620273 G A C17orf47 Silent p.S425S 0.15 TCGA-D3-A8GB-06 17 57326147 57326147 G A GDPD1 Splice_Site p.X123_splice 0.12 TCGA-D3-A8GB-06 17 58740467 58740467 C T PPM1D Nonsense_Mutation p.R458* 0.19 TCGA-D3-A8GB-06 17 59871088 59871088 C T BRIP1 Nonsense_Mutation p.W448* 0.12 TCGA-D3-A8GB-06 17 5998426 5998426 G A WSCD1 Silent p.R244R 0.16 TCGA-D3-A8GB-06 17 61495716 61495716 C T TANC2 Missense_Mutation p.P1322S 0.18 tolerated(0.09) possibly_damaging(0.888) TCGA-D3-A8GB-06 17 61495717 61495717 C T TANC2 Missense_Mutation p.P1322L 0.17 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 17 61558962 61558962 G A ACE Silent p.E327E 0.22 TCGA-D3-A8GB-06 17 61987119 61987119 G A CSHL1 Silent p.F207F 0.16 TCGA-D3-A8GB-06 17 62018568 62018568 C T SCN4A Missense_Mutation p.G1692R 0.10 deleterious(0.01) probably_damaging(0.937) TCGA-D3-A8GB-06 17 66881445 66881445 G A ABCA8 Silent p.F1107F 0.13 TCGA-D3-A8GB-06 17 67039752 67039752 G A ABCA9 Silent p.F226F 0.13 TCGA-D3-A8GB-06 17 72439965 72439965 C T GPRC5C Missense_Mutation p.P399S 0.08 tolerated(0.12) possibly_damaging(0.868) TCGA-D3-A8GB-06 17 72439966 72439966 C T GPRC5C Missense_Mutation p.P399L 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GB-06 17 73498915 73498915 G A CASKIN2 Missense_Mutation p.P747L 0.11 deleterious(0) benign(0.011) TCGA-D3-A8GB-06 17 74075551 74075551 C T ZACN Silent p.S43S 0.08 TCGA-D3-A8GB-06 17 74093908 74093908 G A EXOC7 Silent p.S203S 0.10 TCGA-D3-A8GB-06 17 74395646 74395646 G A UBE2O Silent p.S504S 0.14 TCGA-D3-A8GB-06 17 76167962 76167962 C T SYNGR2 Missense_Mutation p.P207L 0.15 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GB-06 17 76167963 76167963 C T SYNGR2 Silent p.P207P 0.16 TCGA-D3-A8GB-06 17 76521189 76521189 C T DNAH17 Missense_Mutation p.G1252R 0.11 benign(0.013) TCGA-D3-A8GB-06 17 7753175 7753175 C T KDM6B Silent p.Y1159Y 0.17 TCGA-D3-A8GB-06 17 7753176 7753176 C T KDM6B Missense_Mutation p.L1160F 0.17 probably_damaging(0.924) TCGA-D3-A8GB-06 17 78021167 78021167 C G CCDC40 Silent p.S214S 0.10 TCGA-D3-A8GB-06 17 78226617 78226617 T C SLC26A11 3'UTR 0.18 TCGA-D3-A8GB-06 17 78268555 78268555 C T RNF213 Missense_Mutation p.P503L 0.09 benign(0.307) TCGA-D3-A8GB-06 17 79792343 79792343 C T PPP1R27 Intron 0.23 TCGA-D3-A8GB-06 17 79876028 79876028 C T SIRT7 5'UTR 0.11 TCGA-D3-A8GB-06 17 80274723 80274723 C T CD7 Missense_Mutation p.E73K 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GB-06 17 80439041 80439041 C T NARF Silent p.P241P 0.13 TCGA-D3-A8GB-06 17 80439042 80439042 C T NARF Missense_Mutation p.P242S 0.14 tolerated(0.77) benign(0.004) TCGA-D3-A8GB-06 17 80885784 80885784 C T TBCD Silent p.V871V 0.10 TCGA-D3-A8GB-06 18 10485524 10485524 C T APCDD1 Silent p.I280I 0.13 TCGA-D3-A8GB-06 18 10680311 10680311 C T PIEZO2 Missense_Mutation p.E2500K 0.15 tolerated(0.64) benign(0.036) TCGA-D3-A8GB-06 18 13826421 13826421 C T MC5R Silent p.I219I 0.21 TCGA-D3-A8GB-06 18 21710310 21710310 C T TTC39C Missense_Mutation p.R518C 0.17 deleterious(0.05) possibly_damaging(0.513) TCGA-D3-A8GB-06 18 23713870 23713870 C T PSMA8 5'UTR 0.11 TCGA-D3-A8GB-06 18 25563010 25563010 C T CDH2 Silent p.R749R 0.13 TCGA-D3-A8GB-06 18 29052279 29052279 G A DSG3 Missense_Mutation p.G644R 0.18 tolerated(0.07) probably_damaging(0.932) TCGA-D3-A8GB-06 18 30091716 30091716 C T WBP11P1 RNA 0.11 TCGA-D3-A8GB-06 18 30093795 30093795 C T WBP11P1 RNA 0.17 TCGA-D3-A8GB-06 18 31318787 31318787 A T ASXL3 Silent p.I473I 0.11 TCGA-D3-A8GB-06 18 31319119 31319119 C T ASXL3 Missense_Mutation p.P584L 0.24 possibly_damaging(0.543) TCGA-D3-A8GB-06 18 34839186 34839186 C T CELF4 Missense_Mutation p.E431K 0.08 deleterious(0) benign(0.43) TCGA-D3-A8GB-06 18 3534214 3534214 C T DLGAP1 Silent p.R819R 0.11 TCGA-D3-A8GB-06 18 40323384 40323384 G C RIT2 3'UTR 0.15 TCGA-D3-A8GB-06 18 43243781 43243781 C T SLC14A2 Silent p.G461G 0.14 TCGA-D3-A8GB-06 18 43243782 43243782 C T SLC14A2 Missense_Mutation p.P462S 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-D3-A8GB-06 18 44260098 44260098 G A ST8SIA5 Silent p.G346G 0.16 TCGA-D3-A8GB-06 18 44284563 44284563 C T ST8SIA5 Missense_Mutation p.E66K 0.17 benign(0.073) TCGA-D3-A8GB-06 18 44560839 44560839 G T TCEB3B Missense_Mutation p.P266H 0.14 deleterious(0.04) probably_damaging(0.953) TCGA-D3-A8GB-06 18 56586787 56586787 C T ZNF532 Missense_Mutation p.P423L 0.24 tolerated(0.1) benign(0.434) TCGA-D3-A8GB-06 18 59195331 59195331 G A CDH20 Silent p.V383V 0.20 TCGA-D3-A8GB-06 18 66504415 66504415 A G CCDC102B Missense_Mutation p.K139E 0.12 deleterious(0) possibly_damaging(0.546) TCGA-D3-A8GB-06 18 6975027 6975027 G A LAMA1 Silent p.F2166F 0.11 TCGA-D3-A8GB-06 18 77456024 77456024 C T CTDP1 Missense_Mutation p.T149I 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-D3-A8GB-06 18 8720345 8720345 G T SOGA2 Missense_Mutation p.D70Y 0.17 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GB-06 19 10665999 10665999 C T KRI1 Silent p.L554L 0.10 TCGA-D3-A8GB-06 19 10795061 10795061 C T ILF3 Intron 0.14 TCGA-D3-A8GB-06 19 11762814 11762814 C T ZNF833P RNA 0.18 TCGA-D3-A8GB-06 19 12258508 12258508 C T ZNF625 Missense_Mutation p.R38K 0.14 tolerated(0.13) benign(0.001) TCGA-D3-A8GB-06 19 14023373 14023373 G A CC2D1A Silent p.Q115Q 0.21 TCGA-D3-A8GB-06 19 15338892 15338892 G A EPHX3 Silent p.I212I 0.23 TCGA-D3-A8GB-06 19 15756582 15756582 C T CYP4F3 Silent p.F84F 0.10 TCGA-D3-A8GB-06 19 15905302 15905302 C T OR10H5 Silent p.S148S 0.14 TCGA-D3-A8GB-06 19 15918642 15918642 G A OR10H1 Missense_Mutation p.S69F 0.15 deleterious(0) probably_damaging(0.922) TCGA-D3-A8GB-06 19 16060702 16060702 G A OR10H4 Silent p.R295R 0.22 TCGA-D3-A8GB-06 19 16861077 16861077 G A NWD1 Missense_Mutation p.E542K 0.14 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A8GB-06 19 17039817 17039817 C T CPAMD8 Missense_Mutation p.A1074T 0.31 tolerated(0.35) benign(0.083) TCGA-D3-A8GB-06 19 17533053 17533053 C T MVB12A Intron 0.13 TCGA-D3-A8GB-06 19 17533054 17533054 C T MVB12A Intron 0.12 TCGA-D3-A8GB-06 19 19260023 19260023 G A MEF2B Intron 0.12 TCGA-D3-A8GB-06 19 19260215 19260215 G A MEF2B Silent p.F26F 0.07 TCGA-D3-A8GB-06 19 19337408 19337408 G C NCAN Missense_Mutation p.E396Q 0.13 tolerated(0.07) benign(0.01) TCGA-D3-A8GB-06 19 19381074 19381074 G A TM6SF2 Silent p.Y103Y 0.10 TCGA-D3-A8GB-06 19 19390176 19390176 G A SUGP1 Silent p.I458I 0.09 TCGA-D3-A8GB-06 19 19408046 19408046 G A SUGP1 Missense_Mutation p.P332L 0.07 tolerated(0.79) benign(0.001) TCGA-D3-A8GB-06 19 19654905 19654905 C T CILP2 Silent p.T517T 0.06 TCGA-D3-A8GB-06 19 19654906 19654906 C T CILP2 Nonsense_Mutation p.Q518* 0.06 TCGA-D3-A8GB-06 19 19758073 19758073 G A ATP13A1 Silent p.I990I 0.09 TCGA-D3-A8GB-06 19 19823739 19823739 G A ZNF14 Silent p.S117S 0.09 TCGA-D3-A8GB-06 19 20044151 20044151 T C ZNF93 Silent p.G129G 0.03 TCGA-D3-A8GB-06 19 20117929 20117929 C T ZNF682 Missense_Mutation p.E128K 0.05 tolerated(0.58) benign(0) TCGA-D3-A8GB-06 19 20188885 20188885 C T ZNF90 5'UTR 0.06 TCGA-D3-A8GB-06 19 22155698 22155698 C T ZNF208 Missense_Mutation p.R713K 0.13 tolerated(0.53) benign(0.014) TCGA-D3-A8GB-06 19 22939100 22939100 C T ZNF99 3'Flank 0.10 TCGA-D3-A8GB-06 19 22941456 22941456 G A ZNF99 Missense_Mutation p.H419Y 0.08 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A8GB-06 19 22951157 22951157 C T ZNF99 Missense_Mutation p.G59E 0.24 tolerated(0.34) possibly_damaging(0.752) TCGA-D3-A8GB-06 19 23542808 23542808 C A ZNF91 Missense_Mutation p.E991D 0.13 tolerated(0.08) probably_damaging(0.986) TCGA-D3-A8GB-06 19 23542840 23542840 G C ZNF91 Missense_Mutation p.L981V 0.11 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 19 24097781 24097781 C T ZNF726 5'UTR 0.17 TCGA-D3-A8GB-06 19 2413791 2413791 C T TMPRSS9 Missense_Mutation p.R416W 0.19 deleterious(0.01) benign(0.056) TCGA-D3-A8GB-06 19 33106594 33106594 G A ANKRD27 Silent p.C715C 0.12 TCGA-D3-A8GB-06 19 35451806 35451806 C T ZNF792 Silent p.V42V 0.11 TCGA-D3-A8GB-06 19 36245147 36245147 C T LIN37 Missense_Mutation p.P196S 0.13 tolerated(0.35) benign(0.081) TCGA-D3-A8GB-06 19 36245149 36245149 C T LIN37 Silent p.P196P 0.12 TCGA-D3-A8GB-06 19 36940091 36940091 G A ZNF566 Missense_Mutation p.R350C 0.16 tolerated(0.11) probably_damaging(0.964) TCGA-D3-A8GB-06 19 37100873 37100873 G T ZNF382 Missense_Mutation p.E19D 0.15 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GB-06 19 39103297 39103297 C T MAP4K1 Missense_Mutation p.E207K 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 19 40580277 40580277 G A ZNF780A 3'UTR 0.20 TCGA-D3-A8GB-06 19 41349839 41349839 G T CYP2A6 Silent p.L449L 0.10 TCGA-D3-A8GB-06 19 41704504 41704504 G A CYP2S1 Missense_Mutation p.G211R 0.12 tolerated(0.36) benign(0.281) TCGA-D3-A8GB-06 19 42343377 42343377 C T LYPD4 5'UTR 0.16 TCGA-D3-A8GB-06 19 42373208 42373208 C T RPS19 Nonsense_Mutation p.R94* 0.07 TCGA-D3-A8GB-06 19 4292561 4292561 A C TMIGD2 3'UTR 0.09 TCGA-D3-A8GB-06 19 43098996 43098996 C G CEACAM8 5'UTR 0.17 TCGA-D3-A8GB-06 19 43234123 43234123 C T PSG3 Silent p.K265K 0.16 TCGA-D3-A8GB-06 19 43371282 43371282 G A PSG1 3'Flank 0.08 TCGA-D3-A8GB-06 19 43428920 43428920 G A PSG7 3'UTR 0.07 TCGA-D3-A8GB-06 19 43433825 43433825 C T PSG7 Missense_Mutation p.E160K 0.11 deleterious(0.04) probably_damaging(0.909) TCGA-D3-A8GB-06 19 43523049 43523049 C T PSG11 Silent p.Q194Q 0.15 TCGA-D3-A8GB-06 19 436223 436223 C T SHC2 Missense_Mutation p.E299K 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GB-06 19 43920687 43920687 G A TEX101 Nonsense_Mutation p.W142* 0.17 TCGA-D3-A8GB-06 19 44590787 44590787 C T ZNF284 Missense_Mutation p.L386F 0.18 tolerated(0.2) probably_damaging(0.998) TCGA-D3-A8GB-06 19 44791310 44791310 G A ZNF235 3'UTR 0.15 TCGA-D3-A8GB-06 19 44932917 44932917 C T ZNF229 Missense_Mutation p.G680E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 19 45540743 45540743 C T RELB Missense_Mutation p.P479S 0.16 deleterious(0.01) benign(0.23) TCGA-D3-A8GB-06 19 47424699 47424699 C T ARHGAP35 Missense_Mutation p.P923S 0.19 tolerated(0.83) benign(0.003) TCGA-D3-A8GB-06 19 47858383 47858383 C T DHX34 Nonsense_Mutation p.Q265* 0.10 TCGA-D3-A8GB-06 19 4793084 4793084 C T FEM1A Silent p.F406F 0.11 TCGA-D3-A8GB-06 19 49377161 49377161 C T PPP1R15A Missense_Mutation p.P224L 0.09 tolerated(0.07) probably_damaging(0.981) TCGA-D3-A8GB-06 19 49655264 49655264 G A HRC Missense_Mutation p.P675S 0.14 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 19 49671593 49671593 G A TRPM4 Missense_Mutation p.M175I 0.23 tolerated(0.45) benign(0.012) TCGA-D3-A8GB-06 19 49675014 49675014 C T TRPM4 Silent p.V346V 0.29 TCGA-D3-A8GB-06 19 49691987 49691987 G A TRPM4 Silent p.R611R 0.11 TCGA-D3-A8GB-06 19 5082394 5082394 G A KDM4B Missense_Mutation p.G266E 0.11 probably_damaging(0.996) TCGA-D3-A8GB-06 19 51327012 51327012 G A KLK1 5'UTR 0.26 TCGA-D3-A8GB-06 19 51330299 51330299 C T KLK15 Missense_Mutation p.D106N 0.17 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 19 51646009 51646009 G A SIGLEC7 Missense_Mutation p.G128E 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A8GB-06 19 52002906 52002906 C T SIGLEC12 Silent p.L291L 0.21 TCGA-D3-A8GB-06 19 52447943 52447943 C T ZNF613 Silent p.F269F 0.13 TCGA-D3-A8GB-06 19 52447944 52447944 C T ZNF613 Missense_Mutation p.R270C 0.12 tolerated(0.17) benign(0.022) TCGA-D3-A8GB-06 19 52618224 52618224 G A ZNF616 Silent p.S731S 0.17 TCGA-D3-A8GB-06 19 52869116 52869116 C T ZNF610 Missense_Mutation p.S162L 0.10 tolerated(0.11) benign(0.005) TCGA-D3-A8GB-06 19 52941230 52941230 C T ZNF534 Missense_Mutation p.L186F 0.13 tolerated(0.11) possibly_damaging(0.66) TCGA-D3-A8GB-06 19 53014273 53014273 C T ZNF578 Silent p.F213F 0.13 TCGA-D3-A8GB-06 19 53959979 53959979 C T ZNF761 RNA 0.13 TCGA-D3-A8GB-06 19 54783306 54783306 G A LILRB2 Silent p.G184G 0.12 TCGA-D3-A8GB-06 19 55045040 55045040 C T KIR3DX1 Missense_Mutation p.R54W 0.12 deleterious(0.02) possibly_damaging(0.86) TCGA-D3-A8GB-06 19 55086838 55086838 G A LILRA2 Silent p.K257K 0.21 TCGA-D3-A8GB-06 19 55107376 55107376 G A LILRA1 Missense_Mutation p.D312N 0.12 deleterious(0.01) possibly_damaging(0.563) TCGA-D3-A8GB-06 19 55143575 55143575 C T LILRB1 Missense_Mutation p.S183F 0.18 deleterious(0.02) benign(0.004) TCGA-D3-A8GB-06 19 55147916 55147916 G A AC009892.10 Intron 0.10 TCGA-D3-A8GB-06 19 55399440 55399440 C T FCAR Missense_Mutation p.S143F 0.16 tolerated(0.06) probably_damaging(0.99) TCGA-D3-A8GB-06 19 55508684 55508684 G A NLRP2 Splice_Site p.X960_splice 0.10 TCGA-D3-A8GB-06 19 55543607 55543607 G A GP6 Silent p.I75I 0.11 TCGA-D3-A8GB-06 19 56320797 56320797 G A NLRP11 Silent p.L393L 0.14 TCGA-D3-A8GB-06 19 56369192 56369192 G A NLRP4 Missense_Mutation p.G145R 0.11 tolerated(0.44) benign(0.002) TCGA-D3-A8GB-06 19 56388459 56388459 G A NLRP4 Missense_Mutation p.E875K 0.16 tolerated(1) benign(0.017) TCGA-D3-A8GB-06 19 56701523 56701523 G A ZSCAN5B Silent p.L387L 0.16 TCGA-D3-A8GB-06 19 57029882 57029882 C T ZNF471 Silent p.S64S 0.29 TCGA-D3-A8GB-06 19 57132703 57132703 C T ZNF71 Silent p.S16S 0.14 TCGA-D3-A8GB-06 19 57646619 57646619 A G ZIM3 Silent p.A362A 0.14 TCGA-D3-A8GB-06 19 5771000 5771000 C T CATSPERD Silent p.D560D 0.09 TCGA-D3-A8GB-06 19 5778551 5778551 G A CATSPERD Missense_Mutation p.R754K 0.09 tolerated(0.38) benign(0.042) TCGA-D3-A8GB-06 19 58352375 58352375 G A ZNF587B Silent p.Q111Q 0.21 TCGA-D3-A8GB-06 19 58601628 58601628 G A ZSCAN18 Missense_Mutation p.P59S 0.06 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 19 5867030 5867030 C T FUT5 Missense_Mutation p.G236E 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 19 6534797 6534797 C A TNFSF9 Nonsense_Mutation p.S162* 0.30 TCGA-D3-A8GB-06 19 6837032 6837032 C T VAV1 Missense_Mutation p.P651S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 19 6896531 6896531 G A EMR1 Missense_Mutation p.D73N 0.21 tolerated(0.17) benign(0.201) TCGA-D3-A8GB-06 19 7082928 7082928 C T ZNF557 Nonsense_Mutation p.Q156* 0.08 TCGA-D3-A8GB-06 19 7117033 7117033 G A INSR 3'UTR 0.09 TCGA-D3-A8GB-06 19 757280 757280 C T MISP Missense_Mutation p.R112C 0.08 tolerated(0.19) benign(0) TCGA-D3-A8GB-06 19 7620493 7620493 G A PNPLA6 Silent p.R989R 0.17 TCGA-D3-A8GB-06 19 7712717 7712717 C T STXBP2 3'UTR 0.45 TCGA-D3-A8GB-06 19 7712718 7712718 C T STXBP2 3'UTR 0.45 TCGA-D3-A8GB-06 19 7794779 7794779 C T CLEC4G Missense_Mutation p.G224D 0.17 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 19 8028557 8028557 A C ELAVL1 Missense_Mutation p.F264C 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 19 8171112 8171112 C T FBN3 Missense_Mutation p.D1565N 0.12 tolerated(0.24) benign(0.36) TCGA-D3-A8GB-06 19 8402691 8402691 G A KANK3 Nonsense_Mutation p.Q8* 0.23 TCGA-D3-A8GB-06 19 9067149 9067149 G A MUC16 Missense_Mutation p.S6766L 0.12 unknown(0) TCGA-D3-A8GB-06 19 9226347 9226347 G A OR7G1 Silent p.F31F 0.16 TCGA-D3-A8GB-06 19 9325085 9325085 G A OR7D4 Silent p.L143L 0.21 TCGA-D3-A8GB-06 19 9362178 9362178 C T OR7E24 Silent p.I153I 0.21 TCGA-D3-A8GB-06 19 9870614 9870614 C T ZNF846 Silent p.L78L 0.06 TCGA-D3-A8GB-06 19 9921778 9921778 G T FBXL12 Missense_Mutation p.L259M 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-D3-A8GB-06 1 100342050 100342050 C T AGL Silent p.S440S 0.11 TCGA-D3-A8GB-06 1 100733840 100733840 C T RTCA Silent p.T106T 0.10 TCGA-D3-A8GB-06 1 104122102 104122102 C T AMY2B Missense_Mutation p.H506Y 0.11 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GB-06 1 11087130 11087130 C T MASP2 Missense_Mutation p.G625S 0.15 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 1 11087131 11087131 C T MASP2 Silent p.G624G 0.15 TCGA-D3-A8GB-06 1 113232617 113232617 C T MOV10 Missense_Mutation p.P245S 0.25 tolerated(0.2) benign(0.032) TCGA-D3-A8GB-06 1 115828604 115828604 C T NGF 3'UTR 0.17 TCGA-D3-A8GB-06 1 1179644 1179644 G A FAM132A Silent p.F102F 0.12 TCGA-D3-A8GB-06 1 118609387 118609387 G A SPAG17 Missense_Mutation p.H841Y 0.16 deleterious(0.01) benign(0.013) TCGA-D3-A8GB-06 1 11905961 11905961 C T NPPA 3'UTR 0.18 TCGA-D3-A8GB-06 1 12780930 12780930 C T AADACL3 Missense_Mutation p.S87F 0.17 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A8GB-06 1 12819291 12819291 C T C1orf158 Missense_Mutation p.R92C 0.17 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GB-06 1 12835811 12835811 G A PRAMEF12 Missense_Mutation p.R138K 0.13 tolerated(0.29) benign(0.032) TCGA-D3-A8GB-06 1 12918955 12918955 C G PRAMEF2 Missense_Mutation p.L31V 0.15 deleterious(0.02) possibly_damaging(0.475) TCGA-D3-A8GB-06 1 12952825 12952825 C T PRAMEF10 Silent p.R449R 0.14 TCGA-D3-A8GB-06 1 12954914 12954914 G A PRAMEF10 Silent p.S123S 0.27 TCGA-D3-A8GB-06 1 12979766 12979766 C T PRAMEF7 Nonsense_Mutation p.Q320* 0.08 TCGA-D3-A8GB-06 1 145293481 145293481 C T NBPF10 Missense_Mutation p.P26S 0.05 benign(0.113) TCGA-D3-A8GB-06 1 145534215 145534215 G A ITGA10 Missense_Mutation p.E574K 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 1 146638461 146638461 G A PRKAB2 Silent p.F127F 0.10 TCGA-D3-A8GB-06 1 146726573 146726573 C T CHD1L Missense_Mutation p.P97S 0.08 tolerated(0.13) possibly_damaging(0.588) TCGA-D3-A8GB-06 1 146726574 146726574 C T CHD1L Missense_Mutation p.P97L 0.08 tolerated(0.05) benign(0.314) TCGA-D3-A8GB-06 1 150235724 150235724 C T CA14 Silent p.F249F 0.13 TCGA-D3-A8GB-06 1 150325626 150325626 C T PRPF3 3'UTR 0.17 TCGA-D3-A8GB-06 1 150444096 150444096 C T RPRD2 Missense_Mutation p.P891L 0.17 deleterious_low_confidence(0) benign(0.146) TCGA-D3-A8GB-06 1 150471456 150471456 C T TARS2 Silent p.S495S 0.18 TCGA-D3-A8GB-06 1 152127577 152127577 G A RPTN Silent p.I666I 0.17 TCGA-D3-A8GB-06 1 152382959 152382959 C T CRNN Missense_Mutation p.R200K 0.13 tolerated(0.65) benign(0.001) TCGA-D3-A8GB-06 1 153391853 153391853 C T S100A7A 3'UTR 0.11 TCGA-D3-A8GB-06 1 153617592 153617592 C T CHTOP Silent p.G198G 0.17 TCGA-D3-A8GB-06 1 153661727 153661727 C T NPR1 Silent p.T876T 0.16 TCGA-D3-A8GB-06 1 153662323 153662323 C T NPR1 Silent p.L933L 0.31 TCGA-D3-A8GB-06 1 153662324 153662324 C T NPR1 Missense_Mutation p.P934S 0.31 deleterious(0) probably_damaging(0.956) TCGA-D3-A8GB-06 1 154941017 154941017 G A SHC1 Missense_Mutation p.T235I 0.15 deleterious(0.04) possibly_damaging(0.574) TCGA-D3-A8GB-06 1 154991206 154991206 C T DCST2 Silent p.Q712Q 0.23 TCGA-D3-A8GB-06 1 155311856 155311856 G A ASH1L Silent p.I2777I 0.15 TCGA-D3-A8GB-06 1 156213572 156213572 C T PAQR6 3'UTR 0.07 TCGA-D3-A8GB-06 1 156316634 156316634 C T TSACC Missense_Mutation p.A80V 0.15 tolerated(0.2) benign(0.031) TCGA-D3-A8GB-06 1 157514669 157514669 C T FCRL5 Missense_Mutation p.E171K 0.16 tolerated(0.91) benign(0.006) TCGA-D3-A8GB-06 1 157773804 157773804 G A FCRL1 Silent p.F50F 0.11 TCGA-D3-A8GB-06 1 158262105 158262105 G A CD1C Missense_Mutation p.R187Q 0.17 tolerated(0.23) benign(0.051) TCGA-D3-A8GB-06 1 158326224 158326224 G A CD1E Intron 0.19 TCGA-D3-A8GB-06 1 158581157 158581157 G A SPTA1 Missense_Mutation p.S2386L 0.12 deleterious(0) benign(0.446) TCGA-D3-A8GB-06 1 158597434 158597434 C T SPTA1 Missense_Mutation p.G1882E 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 1 158746784 158746784 G A OR6N2 Silent p.I214I 0.13 TCGA-D3-A8GB-06 1 158746862 158746862 G A OR6N2 Silent p.A188A 0.11 TCGA-D3-A8GB-06 1 15978329 15978329 G A DDI2 Silent p.R374R 0.17 TCGA-D3-A8GB-06 1 159827926 159827926 C T VSIG8 Silent p.V128V 0.13 TCGA-D3-A8GB-06 1 159832368 159832368 G A VSIG8 5'UTR 0.18 TCGA-D3-A8GB-06 1 160320004 160320004 T C NCSTN Silent p.L182L 0.14 TCGA-D3-A8GB-06 1 161017824 161017824 G A ARHGAP30 Missense_Mutation p.S996F 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 1 165175192 165175192 G A LMX1A Silent p.L299L 0.16 TCGA-D3-A8GB-06 1 167096120 167096120 C T DUSP27 Silent p.V584V 0.11 TCGA-D3-A8GB-06 1 169391050 169391050 C T CCDC181 Missense_Mutation p.G207R 0.17 deleterious(0.02) possibly_damaging(0.905) TCGA-D3-A8GB-06 1 169694922 169694922 G A SELE Missense_Mutation p.S599L 0.17 tolerated(0.08) benign(0.03) TCGA-D3-A8GB-06 1 171173064 171173064 C T FMO2 Missense_Mutation p.P230S 0.13 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GB-06 1 171173065 171173065 C T FMO2 Missense_Mutation p.P230L 0.12 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GB-06 1 171527261 171527261 C T PRRC2C Silent p.L2002L 0.12 TCGA-D3-A8GB-06 1 17409074 17409074 C T PADI2 Missense_Mutation p.G375E 0.16 tolerated(0.13) probably_damaging(0.97) TCGA-D3-A8GB-06 1 177001941 177001941 C T ASTN1 Missense_Mutation p.M172I 0.07 tolerated_low_confidence(0.14) benign(0.02) TCGA-D3-A8GB-06 1 178426951 178426951 C A RASAL2 Missense_Mutation p.L842I 0.12 tolerated(0.09) probably_damaging(0.995) TCGA-D3-A8GB-06 1 178822880 178822880 G A ANGPTL1 Missense_Mutation p.S289L 0.18 tolerated(0.28) benign(0.064) TCGA-D3-A8GB-06 1 179620031 179620031 G A TDRD5 Silent p.Q610Q 0.11 TCGA-D3-A8GB-06 1 180885750 180885750 A G KIAA1614 Missense_Mutation p.R171G 0.08 tolerated(0.06) benign(0.027) TCGA-D3-A8GB-06 1 181702875 181702875 C T CACNA1E Missense_Mutation p.T1084I 0.21 tolerated(0.06) benign(0.008) TCGA-D3-A8GB-06 1 182569375 182569375 G A RGS16 3'UTR 0.15 TCGA-D3-A8GB-06 1 186057290 186057290 T C HMCN1 Silent p.I3153I 0.16 TCGA-D3-A8GB-06 1 196762501 196762501 G A CFHR3 Missense_Mutation p.G284E 0.19 tolerated(0.28) possibly_damaging(0.792) TCGA-D3-A8GB-06 1 197390665 197390665 C T CRB1 Silent p.F569F 0.10 TCGA-D3-A8GB-06 1 197396967 197396967 A T CRB1 Nonsense_Mutation p.K838* 0.15 TCGA-D3-A8GB-06 1 200960082 200960082 G A KIF21B Missense_Mutation p.H884Y 0.16 tolerated(0.06) benign(0.013) TCGA-D3-A8GB-06 1 200977969 200977969 G A KIF21B Silent p.A125A 0.08 TCGA-D3-A8GB-06 1 200977970 200977970 G A KIF21B Missense_Mutation p.A125V 0.08 tolerated(0.06) benign(0.224) TCGA-D3-A8GB-06 1 201012601 201012601 G A CACNA1S Missense_Mutation p.P1619L 0.10 deleterious_low_confidence(0.03) benign(0.097) TCGA-D3-A8GB-06 1 201924661 201924661 G A TIMM17A Missense_Mutation p.E3K 0.18 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GB-06 1 202128539 202128539 G A PTPN7 Missense_Mutation p.H103Y 0.09 tolerated_low_confidence(0.15) benign(0.031) TCGA-D3-A8GB-06 1 202864747 202864747 C A KLHL12 Silent p.V346V 0.17 TCGA-D3-A8GB-06 1 203740556 203740556 A G LAX1 Silent p.Q87Q 0.16 TCGA-D3-A8GB-06 1 204587951 204587951 G A LRRN2 Silent p.I390I 0.16 TCGA-D3-A8GB-06 1 204939764 204939764 G A NFASC Missense_Mutation p.E342K 0.17 tolerated(0.73) benign(0.112) TCGA-D3-A8GB-06 1 211542922 211542922 C T TRAF5 Silent p.L306L 0.14 TCGA-D3-A8GB-06 1 216680366 216680366 G A ESRRG Missense_Mutation p.A443V 0.14 tolerated(0.28) benign(0.026) TCGA-D3-A8GB-06 1 21940161 21940161 G A RAP1GAP Missense_Mutation p.S209F 0.15 deleterious(0) probably_damaging(0.909) TCGA-D3-A8GB-06 1 220826549 220826549 C T MARK1 Missense_Mutation p.H615Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 1 223284197 223284197 T C TLR5 Missense_Mutation p.N726S 0.11 tolerated(0.63) benign(0.009) TCGA-D3-A8GB-06 1 223285790 223285790 C T TLR5 Missense_Mutation p.G195E 0.14 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 1 226426798 226426798 C T LIN9 Splice_Site p.X390_splice 0.10 TCGA-D3-A8GB-06 1 228333663 228333663 G A GUK1 Intron 0.12 TCGA-D3-A8GB-06 1 228509638 228509638 C T OBSCN Silent p.F5989F 0.19 TCGA-D3-A8GB-06 1 228509868 228509868 C T OBSCN Missense_Mutation p.P6066L 0.38 benign(0.011) TCGA-D3-A8GB-06 1 229772182 229772182 C T URB2 Silent p.L608L 0.17 TCGA-D3-A8GB-06 1 229772183 229772183 T C URB2 Missense_Mutation p.L608P 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 1 231930992 231930992 C T DISC1 Nonsense_Mutation p.Q547* 0.10 TCGA-D3-A8GB-06 1 235324510 235324510 C T RBM34 Missense_Mutation p.R11K 0.17 tolerated(1) benign(0.001) TCGA-D3-A8GB-06 1 235384938 235384938 G A ARID4B Missense_Mutation p.L369F 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 1 237947840 237947840 G A RYR2 Silent p.V4276V 0.13 TCGA-D3-A8GB-06 1 240371752 240371752 G A FMN2 Missense_Mutation p.G1214S 0.17 unknown(0) TCGA-D3-A8GB-06 1 245530330 245530330 C T KIF26B Silent p.S220S 0.12 TCGA-D3-A8GB-06 1 247695273 247695273 C T OR2C3 Missense_Mutation p.E181K 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GB-06 1 248004239 248004239 G A OR11L1 Silent p.F320F 0.11 TCGA-D3-A8GB-06 1 248343354 248343354 C T OR2M2 Missense_Mutation p.P23S 0.13 tolerated(0.41) benign(0.003) TCGA-D3-A8GB-06 1 248367111 248367111 G A OR2M3 Missense_Mutation p.V248M 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 1 26517832 26517832 C T CATSPER4 Nonsense_Mutation p.R90* 0.14 TCGA-D3-A8GB-06 1 27217307 27217307 G A GPATCH3 3'UTR 0.19 TCGA-D3-A8GB-06 1 27676863 27676863 G A SYTL1 Intron 0.22 TCGA-D3-A8GB-06 1 27876812 27876812 G A AHDC1 Silent p.A605A 0.17 TCGA-D3-A8GB-06 1 27876813 27876813 G A AHDC1 Missense_Mutation p.A605V 0.17 deleterious(0.01) possibly_damaging(0.682) TCGA-D3-A8GB-06 1 31406165 31406165 G A PUM1 Missense_Mutation p.R1154C 0.19 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GB-06 1 32044852 32044852 G A TINAGL1 Missense_Mutation p.D120N 0.18 deleterious(0.02) benign(0.007) TCGA-D3-A8GB-06 1 3322142 3322142 G A PRDM16 Silent p.G372G 0.20 TCGA-D3-A8GB-06 1 34180266 34180266 G A CSMD2 Silent p.Y1069Y 0.15 TCGA-D3-A8GB-06 1 34329958 34329958 G A HMGB4 Missense_Mutation p.E56K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GB-06 1 35370306 35370306 G A DLGAP3 Missense_Mutation p.H227Y 0.13 tolerated(0.45) possibly_damaging(0.775) TCGA-D3-A8GB-06 1 36752754 36752754 C T THRAP3 Missense_Mutation p.S308F 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GB-06 1 37271822 37271822 C T GRIK3 Missense_Mutation p.D733N 0.21 tolerated(0.89) benign(0.008) TCGA-D3-A8GB-06 1 38269636 38269636 C T YRDC Silent p.Q267Q 0.27 TCGA-D3-A8GB-06 1 39750866 39750866 C T MACF1 Missense_Mutation p.R420W 0.22 probably_damaging(0.996) TCGA-D3-A8GB-06 1 39751342 39751342 G A MACF1 Missense_Mutation p.E479K 0.18 possibly_damaging(0.854) TCGA-D3-A8GB-06 1 40780050 40780050 C T COL9A2 Missense_Mutation p.G54R 0.13 deleterious(0) unknown(0) TCGA-D3-A8GB-06 1 43316658 43316658 A G ZNF691 Missense_Mutation p.E41G 0.11 tolerated(0.05) unknown(0) TCGA-D3-A8GB-06 1 44069535 44069535 C T PTPRF Silent p.F904F 0.11 TCGA-D3-A8GB-06 1 44415328 44415328 G A IPO13 Silent p.Q108Q 0.17 TCGA-D3-A8GB-06 1 46032551 46032551 G A AKR1A1 Missense_Mutation p.R72Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 1 46179947 46179947 G A IPP Missense_Mutation p.H501Y 0.10 tolerated(0.05) benign(0.063) TCGA-D3-A8GB-06 1 47398432 47398432 C T CYP4A11 Splice_Site p.X455_splice 0.13 TCGA-D3-A8GB-06 1 52704268 52704268 C T ZFYVE9 Silent p.F393F 0.17 TCGA-D3-A8GB-06 1 54375655 54375655 G A DIO1 Missense_Mutation p.E245K 0.16 deleterious(0) possibly_damaging(0.575) TCGA-D3-A8GB-06 1 54665980 54665980 G A MRPL37 Missense_Mutation p.G22S 0.24 tolerated_low_confidence(0.32) benign(0.011) TCGA-D3-A8GB-06 1 56990026 56990026 G A PPAP2B Silent p.F166F 0.16 TCGA-D3-A8GB-06 1 57158042 57158042 G A PRKAA2 Missense_Mutation p.M114I 0.04 tolerated(0.1) benign(0) TCGA-D3-A8GB-06 1 57161743 57161743 C T PRKAA2 Silent p.I233I 0.16 TCGA-D3-A8GB-06 1 57216728 57216728 G A C1orf168 Missense_Mutation p.S459F 0.12 deleterious(0.02) possibly_damaging(0.896) TCGA-D3-A8GB-06 1 57254764 57254764 C T C1orf168 Silent p.K267K 0.06 TCGA-D3-A8GB-06 1 60294471 60294471 G A HOOK1 Missense_Mutation p.E57K 0.07 deleterious(0.03) benign(0.217) TCGA-D3-A8GB-06 1 65098304 65098304 C T CACHD1 Missense_Mutation p.R172W 0.17 deleterious(0.01) benign(0.353) TCGA-D3-A8GB-06 1 6520138 6520138 G A ESPN Missense_Mutation p.D833N 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 1 74621532 74621532 C T LRRIQ3 Missense_Mutation p.E198K 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A8GB-06 1 7724565 7724565 C T CAMTA1 Missense_Mutation p.S653F 0.15 tolerated_low_confidence(0.19) benign(0.429) TCGA-D3-A8GB-06 1 7724566 7724566 C T CAMTA1 Silent p.S653S 0.15 TCGA-D3-A8GB-06 1 77806074 77806074 G A AK5 Missense_Mutation p.D238N 0.11 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GB-06 1 891494 891494 G A NOC2L Silent p.F196F 0.10 TCGA-D3-A8GB-06 1 89573820 89573820 A T GBP2 3'UTR 0.27 TCGA-D3-A8GB-06 1 89890064 89890064 C T GBP1P1 Intron 0.20 TCGA-D3-A8GB-06 1 89890066 89890066 C T GBP1P1 Intron 0.20 TCGA-D3-A8GB-06 1 92568073 92568073 G A BTBD8 Missense_Mutation p.E131K 0.19 tolerated(0.17) benign(0.437) TCGA-D3-A8GB-06 20 138197 138197 C T DEFB127 Silent p.F4F 0.15 TCGA-D3-A8GB-06 20 1629950 1629950 G A SIRPG Missense_Mutation p.P60S 0.19 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GB-06 20 18534989 18534989 C - SEC23B Frame_Shift_Del p.F702Sfs*23 0.13 TCGA-D3-A8GB-06 20 2375867 2375867 C T TGM6 Missense_Mutation p.T70I 0.12 deleterious(0.03) probably_damaging(0.951) TCGA-D3-A8GB-06 20 30584388 30584388 G A XKR7 Missense_Mutation p.D290N 0.18 deleterious(0) possibly_damaging(0.905) TCGA-D3-A8GB-06 20 30584516 30584516 C T XKR7 Silent p.I332I 0.14 TCGA-D3-A8GB-06 20 33500903 33500903 G A ACSS2 Missense_Mutation p.G127S 0.08 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GB-06 20 33500904 33500904 G C ACSS2 Missense_Mutation p.G127A 0.08 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GB-06 20 33842305 33842305 C T MMP24 Missense_Mutation p.R189C 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 20 34502036 34502036 C T PHF20 Missense_Mutation p.S581F 0.11 tolerated(0.06) possibly_damaging(0.678) TCGA-D3-A8GB-06 20 35154452 35154452 C T DLGAP4 Intron 0.14 TCGA-D3-A8GB-06 20 35154453 35154453 C T DLGAP4 Intron 0.13 TCGA-D3-A8GB-06 20 3669836 3669836 G A SIGLEC1 Missense_Mutation p.S1679L 0.11 tolerated(0.18) benign(0.003) TCGA-D3-A8GB-06 20 3686658 3686658 G A SIGLEC1 Missense_Mutation p.P147S 0.09 tolerated(0.14) possibly_damaging(0.8) TCGA-D3-A8GB-06 20 40730875 40730875 C T PTPRT Silent p.R1201R 0.11 TCGA-D3-A8GB-06 20 40747129 40747129 C T PTPRT Missense_Mutation p.E966K 0.17 deleterious(0) possibly_damaging(0.596) TCGA-D3-A8GB-06 20 42825776 42825776 G A OSER1 Silent p.T265T 0.21 TCGA-D3-A8GB-06 20 42907844 42907844 G A GDAP1L1 Silent p.R336R 0.19 TCGA-D3-A8GB-06 20 43058294 43058294 G A HNF4A Missense_Mutation p.E472K 0.13 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-D3-A8GB-06 20 43386348 43386348 C T RIMS4 Silent p.R139R 0.10 TCGA-D3-A8GB-06 20 43836840 43836840 G A SEMG1 Missense_Mutation p.G301E 0.08 tolerated(0.18) benign(0.21) TCGA-D3-A8GB-06 20 44207873 44207873 C T WFDC8 Missense_Mutation p.R5Q 0.17 tolerated_low_confidence(0.5) benign(0.003) TCGA-D3-A8GB-06 20 44751835 44751835 C T CD40 Silent p.F158F 0.19 TCGA-D3-A8GB-06 20 45354454 45354454 C T SLC2A10 Missense_Mutation p.S260F 0.13 deleterious(0) possibly_damaging(0.83) TCGA-D3-A8GB-06 20 47686748 47686748 C T CSE1L Missense_Mutation p.P228S 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 20 55099959 55099959 C T FAM209A Missense_Mutation p.P32L 0.16 tolerated(0.58) benign(0.001) TCGA-D3-A8GB-06 20 56099177 56099177 C T CTCFL Missense_Mutation p.E29K 0.13 tolerated(0.1) benign(0.011) TCGA-D3-A8GB-06 20 56099178 56099178 C T CTCFL Silent p.K28K 0.13 TCGA-D3-A8GB-06 20 56190057 56190057 G A ZBP1 Nonsense_Mutation p.Q130* 0.15 TCGA-D3-A8GB-06 20 56190058 56190058 G A ZBP1 Silent p.A129A 0.15 TCGA-D3-A8GB-06 20 57766078 57766078 G A ZNF831 Missense_Mutation p.E2K 0.21 deleterious(0) possibly_damaging(0.696) TCGA-D3-A8GB-06 20 57829283 57829283 G A ZNF831 Missense_Mutation p.E1507K 0.16 tolerated(0.58) benign(0.05) TCGA-D3-A8GB-06 20 60470065 60470065 G A CDH4 Missense_Mutation p.D384N 0.21 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 20 60485532 60485532 G A CDH4 Missense_Mutation p.V415M 0.10 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GB-06 20 62046362 62046362 G A KCNQ2 Silent p.L473L 0.18 TCGA-D3-A8GB-06 20 62126219 62126219 G C EEF1A2 Missense_Mutation p.T187S 0.15 tolerated_low_confidence(0.19) benign(0.004) TCGA-D3-A8GB-06 20 860423 860423 C T ANGPT4 Silent p.V340V 0.17 TCGA-D3-A8GB-06 21 14982802 14982802 G A POTED Missense_Mutation p.D85N 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-D3-A8GB-06 21 22910334 22910334 C T NCAM2 3'UTR 0.17 TCGA-D3-A8GB-06 21 28296360 28296360 C T ADAMTS5 3'UTR 0.11 TCGA-D3-A8GB-06 21 30699257 30699257 C T BACH1 Missense_Mutation p.S371F 0.12 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A8GB-06 21 31538816 31538816 A T CLDN17 Silent p.I40I 0.21 TCGA-D3-A8GB-06 21 33371051 33371051 C T HUNK Missense_Mutation p.R567C 0.15 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-D3-A8GB-06 21 34958364 34958364 G A DONSON Missense_Mutation p.H176Y 0.11 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GB-06 21 38460631 38460631 C T TTC3 Missense_Mutation p.P108L 0.18 deleterious(0) possibly_damaging(0.774) TCGA-D3-A8GB-06 21 43714711 43714711 C T ABCG1 Silent p.F583F 0.15 TCGA-D3-A8GB-06 21 43912884 43912884 A C RSPH1 Missense_Mutation p.D86E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 21 43916221 43916221 C A RSPH1 Intron 0.10 TCGA-D3-A8GB-06 21 44479368 44479368 C T CBS Silent p.L397L 0.11 TCGA-D3-A8GB-06 21 46000004 46000004 G A KRTAP10-5 Missense_Mutation p.S151L 0.13 tolerated(0.09) unknown(0) TCGA-D3-A8GB-06 21 47552250 47552250 G A COL6A2 Silent p.T948T 0.13 TCGA-D3-A8GB-06 21 47552251 47552251 G A COL6A2 Missense_Mutation p.D949N 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GB-06 21 47917015 47917015 C A DIP2A Missense_Mutation p.P133H 0.12 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 22 17280675 17280675 C T XKR3 Nonsense_Mutation p.W192* 0.17 TCGA-D3-A8GB-06 22 18022339 18022339 C T CECR2 Missense_Mutation p.S815F 0.20 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A8GB-06 22 24086576 24086576 G A ZNF70 Missense_Mutation p.P251L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GB-06 22 29837759 29837759 T C RFPL1 Missense_Mutation p.V201A 0.17 tolerated(0.41) possibly_damaging(0.624) TCGA-D3-A8GB-06 22 30951552 30951552 G A GAL3ST1 Silent p.F220F 0.23 TCGA-D3-A8GB-06 22 30975868 30975868 G A PES1 Silent p.L408L 0.16 TCGA-D3-A8GB-06 22 32506176 32506176 C T SLC5A1 Silent p.V657V 0.16 TCGA-D3-A8GB-06 22 32547492 32547492 C T C22orf42 Silent p.E149E 0.16 TCGA-D3-A8GB-06 22 38021829 38021829 C T GGA1 Silent p.L322L 0.11 TCGA-D3-A8GB-06 22 38508231 38508231 C T PLA2G6 Silent p.E786E 0.25 TCGA-D3-A8GB-06 22 38916047 38916047 C T DMC1 Missense_Mutation p.G334E 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 22 39770395 39770395 C T SYNGR1 Silent p.F58F 0.12 TCGA-D3-A8GB-06 22 40055116 40055116 C A CACNA1I Silent p.I775I 0.15 TCGA-D3-A8GB-06 22 41601380 41601380 G A L3MBTL2 Missense_Mutation p.R5Q 0.19 tolerated_low_confidence(0.13) possibly_damaging(0.885) TCGA-D3-A8GB-06 22 42205998 42205998 C T CCDC134 Silent p.L73L 0.21 TCGA-D3-A8GB-06 22 43203103 43203103 C T ARFGAP3 Missense_Mutation p.E463K 0.23 tolerated(0.14) benign(0.047) TCGA-D3-A8GB-06 22 44276732 44276732 G A PNPLA5 Silent p.P411P 0.18 TCGA-D3-A8GB-06 22 44276733 44276733 G A PNPLA5 Missense_Mutation p.P411L 0.17 tolerated(0.14) benign(0) TCGA-D3-A8GB-06 22 44893123 44893123 A C LDOC1L Missense_Mutation p.F105C 0.14 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GB-06 22 45938072 45938072 G A FBLN1 Silent p.G368G 0.13 TCGA-D3-A8GB-06 22 46704592 46704592 C T GTSE1 Missense_Mutation p.P172S 0.11 deleterious(0.05) possibly_damaging(0.892) TCGA-D3-A8GB-06 22 46704593 46704593 C T GTSE1 Missense_Mutation p.P172L 0.11 deleterious(0.02) benign(0.302) TCGA-D3-A8GB-06 22 50279060 50279060 C T ZBED4 Missense_Mutation p.R584W 0.25 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GB-06 22 50615609 50615609 C T PANX2 Silent p.F156F 0.15 TCGA-D3-A8GB-06 22 50688784 50688784 G A HDAC10 Intron 0.23 TCGA-D3-A8GB-06 22 50688785 50688785 G A HDAC10 Intron 0.22 TCGA-D3-A8GB-06 22 50988145 50988145 C T KLHDC7B Missense_Mutation p.S517F 0.11 tolerated(0.51) probably_damaging(0.945) TCGA-D3-A8GB-06 2 101612026 101612026 C T NPAS2 Silent p.L819L 0.22 TCGA-D3-A8GB-06 2 10560048 10560048 C T HPCAL1 Silent p.F55F 0.15 TCGA-D3-A8GB-06 2 108626711 108626711 G A SLC5A7 Nonsense_Mutation p.W379* 0.10 TCGA-D3-A8GB-06 2 109382665 109382665 C T RANBP2 Silent p.S1890S 0.12 TCGA-D3-A8GB-06 2 1161322 1161322 G A SNTG2 Splice_Site p.X167_splice 0.19 TCGA-D3-A8GB-06 2 121554974 121554974 C T GLI2 Silent p.P26P 0.16 TCGA-D3-A8GB-06 2 128047003 128047003 G A ERCC3 Silent p.I244I 0.11 TCGA-D3-A8GB-06 2 128341877 128341877 C T MYO7B Silent p.S508S 0.10 TCGA-D3-A8GB-06 2 132010545 132010545 G A POTEE Missense_Mutation p.G551R 0.08 tolerated_low_confidence(0.31) probably_damaging(0.956) TCGA-D3-A8GB-06 2 132021698 132021698 G A POTEE Missense_Mutation p.M890I 0.06 tolerated_low_confidence(0.05) benign(0.428) TCGA-D3-A8GB-06 2 133554254 133554254 C T NCKAP5 Missense_Mutation p.E286K 0.10 deleterious(0.01) benign(0.298) TCGA-D3-A8GB-06 2 135745072 135745072 T C MAP3K19 Missense_Mutation p.E457G 0.19 tolerated(0.1) benign(0.02) TCGA-D3-A8GB-06 2 135745073 135745073 C T MAP3K19 Missense_Mutation p.E457K 0.19 tolerated(0.08) benign(0.09) TCGA-D3-A8GB-06 2 136872832 136872832 G A CXCR4 Silent p.I226I 0.19 TCGA-D3-A8GB-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.22 deleterious(0.02) unknown(0) TCGA-D3-A8GB-06 2 141625239 141625239 C T LRP1B Missense_Mutation p.G1500E 0.10 benign(0.007) TCGA-D3-A8GB-06 2 141643872 141643872 G A LRP1B Missense_Mutation p.R1267C 0.13 possibly_damaging(0.689) TCGA-D3-A8GB-06 2 158851772 158851772 G A UPP2 Splice_Site p.X21_splice 0.13 TCGA-D3-A8GB-06 2 16082317 16082317 C T MYCN Missense_Mutation p.P44L 0.25 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 2 162272829 162272829 C T TBR1 5'UTR 0.27 TCGA-D3-A8GB-06 2 166850897 166850897 G A SCN1A Silent p.F1537F 0.14 TCGA-D3-A8GB-06 2 168725486 168725486 G A B3GALT1 5'UTR 0.14 TCGA-D3-A8GB-06 2 170011077 170011077 C T LRP2 Missense_Mutation p.R4063Q 0.19 probably_damaging(0.954) TCGA-D3-A8GB-06 2 170012882 170012882 G A LRP2 Missense_Mutation p.P4018L 0.08 possibly_damaging(0.788) TCGA-D3-A8GB-06 2 170493285 170493285 C T PPIG Missense_Mutation p.S506F 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-D3-A8GB-06 2 172725232 172725232 G A SLC25A12 Silent p.I56I 0.12 TCGA-D3-A8GB-06 2 17697039 17697039 C T RAD51AP2 Missense_Mutation p.E882K 0.14 tolerated(1) benign(0.001) TCGA-D3-A8GB-06 2 178402952 178402952 C T AGPS 3'UTR 0.17 TCGA-D3-A8GB-06 2 178481806 178481806 G A TTC30A Missense_Mutation p.H542Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 2 17902204 17902204 T A SMC6 Intron 0.14 TCGA-D3-A8GB-06 2 179421628 179421628 G A TTN Missense_Mutation p.S29418F 0.11 TCGA-D3-A8GB-06 2 179424409 179424409 C T TTN Missense_Mutation p.R28817K 0.21 TCGA-D3-A8GB-06 2 179433708 179433708 C T TTN Silent p.L25717L 0.14 TCGA-D3-A8GB-06 2 179444372 179444372 C T TTN Missense_Mutation p.E22518K 0.18 TCGA-D3-A8GB-06 2 179453363 179453363 G T TTN Missense_Mutation p.P21030Q 0.11 TCGA-D3-A8GB-06 2 179478536 179478536 G A TTN Missense_Mutation p.P16492S 0.16 TCGA-D3-A8GB-06 2 179482565 179482565 C T TTN Missense_Mutation p.R15838Q 0.15 TCGA-D3-A8GB-06 2 179484743 179484743 C T TTN Silent p.R15467R 0.17 TCGA-D3-A8GB-06 2 179485074 179485074 C T TTN Missense_Mutation p.E15392K 0.15 TCGA-D3-A8GB-06 2 179485520 179485520 C T TTN Missense_Mutation p.D15273N 0.16 TCGA-D3-A8GB-06 2 179496982 179496982 C T TTN Missense_Mutation p.E14547K 0.15 TCGA-D3-A8GB-06 2 179554063 179554063 C T TTN Silent p.R10655R 0.15 TCGA-D3-A8GB-06 2 179575549 179575549 C T TTN Silent p.P9425P 0.12 TCGA-D3-A8GB-06 2 179583606 179583606 G A TTN Silent p.F8107F 0.19 TCGA-D3-A8GB-06 2 179598529 179598529 G A TTN Missense_Mutation p.P5196L 0.12 TCGA-D3-A8GB-06 2 179599097 179599097 C T TTN Missense_Mutation p.E5152K 0.16 TCGA-D3-A8GB-06 2 179615571 179615571 G A TTN Intron 0.18 TCGA-D3-A8GB-06 2 17962697 17962697 G A GEN1 Missense_Mutation p.G740R 0.12 tolerated(0.07) possibly_damaging(0.516) TCGA-D3-A8GB-06 2 17963223 17963223 G A GEN1 3'UTR 0.13 TCGA-D3-A8GB-06 2 179632880 179632880 G A TTN Missense_Mutation p.R3056C 0.16 TCGA-D3-A8GB-06 2 179633435 179633435 C T TTN Missense_Mutation p.G3043E 0.17 TCGA-D3-A8GB-06 2 179635309 179635309 C T TTN Missense_Mutation p.G2737D 0.19 TCGA-D3-A8GB-06 2 179641026 179641026 C T TTN Silent p.G1855G 0.14 TCGA-D3-A8GB-06 2 181922458 181922458 C T UBE2E3 Missense_Mutation p.S95L 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GB-06 2 190541567 190541567 C T ANKAR Silent p.I117I 0.11 TCGA-D3-A8GB-06 2 196664169 196664169 T A DNAH7 Missense_Mutation p.I3402F 0.17 deleterious(0.02) benign(0.094) TCGA-D3-A8GB-06 2 196681646 196681646 G A DNAH7 Missense_Mutation p.S3156L 0.16 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GB-06 2 196799350 196799350 C T DNAH7 Missense_Mutation p.E1146K 0.14 deleterious(0.01) benign(0.33) TCGA-D3-A8GB-06 2 196891494 196891494 C T DNAH7 Silent p.R219R 0.15 TCGA-D3-A8GB-06 2 209045953 209045953 C T C2orf80 Missense_Mutation p.G95R 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 2 21226047 21226047 C T APOB Missense_Mutation p.D4083N 0.14 benign(0.028) TCGA-D3-A8GB-06 2 21231384 21231384 C T APOB Missense_Mutation p.E2786K 0.11 benign(0) TCGA-D3-A8GB-06 2 21234108 21234108 C T APOB Missense_Mutation p.A1878T 0.17 benign(0.005) TCGA-D3-A8GB-06 2 212812260 212812260 G A ERBB4 Missense_Mutation p.R106C 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 2 214727282 214727282 C T SPAG16 Missense_Mutation p.P382S 0.14 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A8GB-06 2 214794688 214794688 G A SPAG16 Missense_Mutation p.D407N 0.08 tolerated(0.72) benign(0.002) TCGA-D3-A8GB-06 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.21 tolerated(0.35) probably_damaging(0.947) TCGA-D3-A8GB-06 2 215301380 215301380 G A VWC2L Missense_Mutation p.E140K 0.19 deleterious(0) benign(0.217) TCGA-D3-A8GB-06 2 218999936 218999936 G A CXCR2 Missense_Mutation p.A138T 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 2 219344390 219344390 G A USP37 Silent p.S628S 0.20 TCGA-D3-A8GB-06 2 219494308 219494308 C T PLCD4 Silent p.V347V 0.13 TCGA-D3-A8GB-06 2 219647080 219647080 G T CYP27A1 Nonsense_Mutation p.E59* 0.13 TCGA-D3-A8GB-06 2 219920515 219920515 C A IHH Missense_Mutation p.R217L 0.23 tolerated(0.3) benign(0.004) TCGA-D3-A8GB-06 2 220348724 220348724 G A SPEG Missense_Mutation p.R2180Q 0.24 possibly_damaging(0.545) TCGA-D3-A8GB-06 2 220348725 220348725 G A SPEG Silent p.R2180R 0.24 TCGA-D3-A8GB-06 2 220368870 220368870 C T GMPPA Silent p.L185L 0.18 TCGA-D3-A8GB-06 2 220428346 220428346 G A OBSL1 Missense_Mutation p.P804L 0.17 tolerated(0.07) probably_damaging(0.98) TCGA-D3-A8GB-06 2 224462246 224462246 C T SCG2 Nonsense_Mutation p.W585* 0.16 TCGA-D3-A8GB-06 2 226447415 226447415 G A NYAP2 Missense_Mutation p.G428S 0.29 tolerated(0.43) probably_damaging(0.97) TCGA-D3-A8GB-06 2 226447416 226447416 G A NYAP2 Missense_Mutation p.G428D 0.31 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A8GB-06 2 227979401 227979401 C T COL4A4 Silent p.G167G 0.07 TCGA-D3-A8GB-06 2 228118833 228118833 C T COL4A3 Silent p.L257L 0.13 TCGA-D3-A8GB-06 2 228882539 228882539 G A SPHKAP Missense_Mutation p.P1011S 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 2 230911380 230911380 C T SLC16A14 Silent p.Q154Q 0.20 TCGA-D3-A8GB-06 2 231102934 231102934 C T SP140 Nonsense_Mutation p.Q82* 0.20 TCGA-D3-A8GB-06 2 231367791 231367791 C T SP100 Silent p.A577A 0.11 TCGA-D3-A8GB-06 2 231774733 231774733 C T GPR55 Silent p.T315T 0.20 TCGA-D3-A8GB-06 2 233246305 233246305 C T ALPP Silent p.L470L 0.12 TCGA-D3-A8GB-06 2 233897541 233897541 C T NEU2 Silent p.L54L 0.11 TCGA-D3-A8GB-06 2 233990536 233990536 C T INPP5D Missense_Mutation p.P144L 0.11 tolerated(0.08) benign(0.018) TCGA-D3-A8GB-06 2 234526466 234526466 G A UGT1A8 Nonsense_Mutation p.W38* 0.12 TCGA-D3-A8GB-06 2 236708150 236708150 G A AGAP1 Missense_Mutation p.R314Q 0.14 deleterious(0) possibly_damaging(0.833) TCGA-D3-A8GB-06 2 236708151 236708151 G A AGAP1 Silent p.R314R 0.14 TCGA-D3-A8GB-06 2 238277290 238277290 C T COL6A3 Missense_Mutation p.E1606K 0.15 probably_damaging(0.969) TCGA-D3-A8GB-06 2 241702142 241702142 C T KIF1A Missense_Mutation p.D704N 0.25 tolerated(0.12) benign(0.345) TCGA-D3-A8GB-06 2 241715317 241715317 G A KIF1A Silent p.F303F 0.19 TCGA-D3-A8GB-06 2 242415288 242415288 C T FARP2 Silent p.I716I 0.21 TCGA-D3-A8GB-06 2 24494810 24494810 C T ITSN2 Silent p.R694R 0.21 TCGA-D3-A8GB-06 2 25754460 25754460 G A DTNB Missense_Mutation p.P295S 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GB-06 2 27449787 27449787 C T CAD Silent p.F748F 0.17 TCGA-D3-A8GB-06 2 27559123 27559123 G A GTF3C2 Missense_Mutation p.H433Y 0.13 tolerated(0.42) benign(0.001) TCGA-D3-A8GB-06 2 27730551 27730551 C T GCKR Missense_Mutation p.P383S 0.13 deleterious(0.04) benign(0.254) TCGA-D3-A8GB-06 2 27801751 27801751 G A C2orf16 Missense_Mutation p.G771E 0.13 tolerated(0.69) benign(0.391) TCGA-D3-A8GB-06 2 27803009 27803009 G A C2orf16 Silent p.R1190R 0.07 TCGA-D3-A8GB-06 2 31588342 31588342 G A XDH Missense_Mutation p.P842L 0.14 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 2 31588343 31588343 G A XDH Missense_Mutation p.P842S 0.15 tolerated(0.05) possibly_damaging(0.764) TCGA-D3-A8GB-06 2 33482494 33482494 C T LTBP1 Missense_Mutation p.P771S 0.14 deleterious(0.02) possibly_damaging(0.889) TCGA-D3-A8GB-06 2 3482632 3482632 C T TRAPPC12 Silent p.L631L 0.12 TCGA-D3-A8GB-06 2 36740884 36740884 G A CRIM1 Missense_Mutation p.G656R 0.17 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GB-06 2 36740885 36740885 G A CRIM1 Missense_Mutation p.G656E 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GB-06 2 37486807 37486807 C T PRKD3 Silent p.R688R 0.10 TCGA-D3-A8GB-06 2 39440570 39440570 G A CDKL4 Nonsense_Mutation p.Q112* 0.16 TCGA-D3-A8GB-06 2 48952870 48952870 T C LHCGR Missense_Mutation p.N110D 0.12 deleterious(0.01) benign(0.122) TCGA-D3-A8GB-06 2 55544850 55544850 G A CCDC88A Missense_Mutation p.S1150F 0.15 deleterious(0.02) benign(0.252) TCGA-D3-A8GB-06 2 64682540 64682540 C T LGALSL Silent p.F33F 0.12 TCGA-D3-A8GB-06 2 64863847 64863847 G A SERTAD2 Silent p.P53P 0.18 TCGA-D3-A8GB-06 2 69045095 69045095 G A ARHGAP25 Silent p.S324S 0.19 TCGA-D3-A8GB-06 2 69472543 69472543 C T ANTXR1 Missense_Mutation p.P541S 0.14 tolerated_low_confidence(0.17) unknown(0) TCGA-D3-A8GB-06 2 69472544 69472544 C T ANTXR1 Missense_Mutation p.P541L 0.14 tolerated_low_confidence(0.14) unknown(0) TCGA-D3-A8GB-06 2 69601181 69601181 G A GFPT1 Silent p.I24I 0.06 TCGA-D3-A8GB-06 2 71913661 71913661 T A DYSF 3'UTR 0.10 TCGA-D3-A8GB-06 2 71913663 71913663 C T DYSF 3'UTR 0.10 TCGA-D3-A8GB-06 2 74699807 74699807 G A MRPL53 5'UTR 0.18 TCGA-D3-A8GB-06 2 74710560 74710560 C T TTC31 Intron 0.18 TCGA-D3-A8GB-06 2 74746290 74746290 G A DQX1 Missense_Mutation p.S625F 0.15 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GB-06 2 74749785 74749785 C T DQX1 Missense_Mutation p.E473K 0.22 deleterious(0.03) benign(0.174) TCGA-D3-A8GB-06 2 80831302 80831302 C T CTNNA2 Nonsense_Mutation p.Q765* 0.14 TCGA-D3-A8GB-06 2 85578095 85578095 G A RETSAT Silent p.I135I 0.21 TCGA-D3-A8GB-06 2 89160418 89160418 C T IGKJ4 Missense_Mutation p.G6E 0.19 possibly_damaging(0.731) TCGA-D3-A8GB-06 2 89475814 89475814 G A IGKV2-24 Missense_Mutation p.P120S 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 2 95481477 95481477 C T ANKRD20A8P RNA 0.11 TCGA-D3-A8GB-06 2 96781403 96781404 GG A ADRA2B Frame_Shift_Del p.P162Lfs*27 0.12 TCGA-D3-A8GB-06 2 98709614 98709614 G A VWA3B Missense_Mutation p.G20E 0.08 tolerated(0.2) benign(0.055) TCGA-D3-A8GB-06 2 99454687 99454687 G A KIAA1211L Missense_Mutation p.S45L 0.11 deleterious(0) possibly_damaging(0.519) TCGA-D3-A8GB-06 3 102153995 102153995 G A ZPLD1 Missense_Mutation p.E13K 0.12 tolerated_low_confidence(0.95) benign(0) TCGA-D3-A8GB-06 3 107097056 107097056 C T CCDC54 Missense_Mutation p.L208F 0.17 tolerated(0.4) benign(0.051) TCGA-D3-A8GB-06 3 108363478 108363478 C T DZIP3 Missense_Mutation p.L537F 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GB-06 3 108541760 108541760 C T TRAT1 5'UTR 0.11 TCGA-D3-A8GB-06 3 108778693 108778693 C T MORC1 Missense_Mutation p.D331N 0.15 tolerated(0.26) benign(0.376) TCGA-D3-A8GB-06 3 108818282 108818282 G C MORC1 Missense_Mutation p.L116V 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GB-06 3 112545923 112545923 G A CD200R1L Missense_Mutation p.P199L 0.16 tolerated(0.18) benign(0) TCGA-D3-A8GB-06 3 119246588 119246588 C T CD80 3'UTR 0.09 TCGA-D3-A8GB-06 3 121345738 121345738 G A FBXO40 Missense_Mutation p.R704Q 0.18 tolerated_low_confidence(0.2) benign(0.007) TCGA-D3-A8GB-06 3 121383852 121383852 G T GOLGB1 Missense_Mutation p.S3199Y 0.20 possibly_damaging(0.473) TCGA-D3-A8GB-06 3 121650550 121650550 T C SLC15A2 Missense_Mutation p.F577L 0.11 deleterious(0) benign(0.017) TCGA-D3-A8GB-06 3 121724138 121724138 G A ILDR1 Missense_Mutation p.P111L 0.11 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 3 124352768 124352768 A T KALRN Missense_Mutation p.I148F 0.11 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GB-06 3 124449234 124449234 G A UMPS 5'UTR 0.18 TCGA-D3-A8GB-06 3 128181800 128181800 C T DNAJB8 Missense_Mutation p.E97K 0.10 tolerated(0.07) benign(0.053) TCGA-D3-A8GB-06 3 128631467 128631467 C T ACAD9 3'UTR 0.21 TCGA-D3-A8GB-06 3 128979213 128979213 C T COPG1 Silent p.L303L 0.20 TCGA-D3-A8GB-06 3 136665116 136665116 C T NCK1 Silent p.L306L 0.15 TCGA-D3-A8GB-06 3 140123403 140123403 C T CLSTN2 Silent p.A144A 0.25 TCGA-D3-A8GB-06 3 141164531 141164531 C T ZBTB38 Nonsense_Mutation p.Q1101* 0.18 TCGA-D3-A8GB-06 3 142031507 142031507 T G XRN1 Missense_Mutation p.Y1584S 0.15 deleterious_low_confidence(0) benign(0.183) TCGA-D3-A8GB-06 3 14518741 14518741 C T SLC6A6 Missense_Mutation p.S413F 0.21 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 3 148614387 148614387 G A CPA3 Missense_Mutation p.G383S 0.18 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GB-06 3 150916206 150916206 C T GPR171 3'UTR 0.15 TCGA-D3-A8GB-06 3 151155325 151155325 G A IGSF10 Missense_Mutation p.P2342S 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 3 156266748 156266748 C T SSR3 Missense_Mutation p.R102Q 0.09 tolerated(0.32) benign(0.008) TCGA-D3-A8GB-06 3 158545117 158545117 C T MFSD1 Missense_Mutation p.S511F 0.16 deleterious_low_confidence(0) benign(0.311) TCGA-D3-A8GB-06 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.09 deleterious(0) probably_damaging(0.929) TCGA-D3-A8GB-06 3 164907726 164907726 G A SLITRK3 Missense_Mutation p.S298L 0.22 tolerated(0.34) benign(0) TCGA-D3-A8GB-06 3 168833559 168833559 G A MECOM Missense_Mutation p.P578S 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GB-06 3 169889170 169889170 G A PHC3 Silent p.S135S 0.20 TCGA-D3-A8GB-06 3 179472600 179472600 C T USP13 Missense_Mutation p.P627S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 3 180359791 180359791 C T CCDC39 Missense_Mutation p.E622K 0.10 deleterious(0.05) benign(0.001) TCGA-D3-A8GB-06 3 183777341 183777341 C T HTR3C Missense_Mutation p.P280S 0.17 tolerated(0.42) benign(0.1) TCGA-D3-A8GB-06 3 183777342 183777342 C T HTR3C Missense_Mutation p.P280L 0.17 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A8GB-06 3 183885414 183885414 C T DVL3 Silent p.I415I 0.11 TCGA-D3-A8GB-06 3 184039315 184039315 C T EIF4G1 Missense_Mutation p.P322S 0.10 tolerated(0.12) probably_damaging(0.99) TCGA-D3-A8GB-06 3 193039580 193039580 G A ATP13A5 Missense_Mutation p.S602L 0.15 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GB-06 3 193125123 193125123 G A ATP13A4 Silent p.F1119F 0.20 TCGA-D3-A8GB-06 3 193153451 193153451 G A ATP13A4 Silent p.L919L 0.04 TCGA-D3-A8GB-06 3 194081117 194081117 C T LRRC15 Missense_Mutation p.G225E 0.17 deleterious(0.04) benign(0.343) TCGA-D3-A8GB-06 3 21467034 21467034 G A ZNF385D Missense_Mutation p.H268Y 0.06 tolerated(0.1) probably_damaging(0.932) TCGA-D3-A8GB-06 3 24174831 24174831 G A THRB Silent p.A287A 0.10 TCGA-D3-A8GB-06 3 27387642 27387642 C T NEK10 Silent p.A66A 0.23 TCGA-D3-A8GB-06 3 2908486 2908486 C T CNTN4 Missense_Mutation p.R169C 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 3 32031174 32031174 C T ZNF860 Silent p.I201I 0.14 TCGA-D3-A8GB-06 3 35729262 35729262 C T ARPP21 Missense_Mutation p.S98F 0.12 deleterious(0) benign(0.095) TCGA-D3-A8GB-06 3 38888420 38888420 G A SCN11A Missense_Mutation p.A1714V 0.17 deleterious(0.03) benign(0.37) TCGA-D3-A8GB-06 3 39116403 39116403 C T WDR48 Missense_Mutation p.R287W 0.18 tolerated(0.18) possibly_damaging(0.586) TCGA-D3-A8GB-06 3 42735116 42735116 C T HHATL Missense_Mutation p.R414Q 0.21 tolerated(0.74) benign(0.003) TCGA-D3-A8GB-06 3 42916604 42916604 G A CYP8B1 Silent p.L235L 0.24 TCGA-D3-A8GB-06 3 44636414 44636414 G A ZNF660 Silent p.E243E 0.15 TCGA-D3-A8GB-06 3 46755820 46755820 C T PRSS50 Silent p.Q214Q 0.19 TCGA-D3-A8GB-06 3 4711392 4711392 G A ITPR1 Silent p.V632V 0.14 TCGA-D3-A8GB-06 3 48501279 48501279 C T ATRIP Missense_Mutation p.P340L 0.17 tolerated(1) benign(0.147) TCGA-D3-A8GB-06 3 48623778 48623778 C T COL7A1 Silent p.E1179E 0.13 TCGA-D3-A8GB-06 3 49662676 49662676 C T BSN Missense_Mutation p.P165S 0.27 unknown(0) TCGA-D3-A8GB-06 3 50197115 50197115 C T SEMA3F Silent p.F20F 0.20 TCGA-D3-A8GB-06 3 53223158 53223158 C T PRKCD Missense_Mutation p.P547S 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 3 53845375 53845375 A G CACNA1D Missense_Mutation p.D2163G 0.24 tolerated_low_confidence(0.34) benign(0.053) TCGA-D3-A8GB-06 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.12 TCGA-D3-A8GB-06 3 65415352 65415352 C T MAGI1 Silent p.Q670Q 0.16 TCGA-D3-A8GB-06 3 78710265 78710265 G C ROBO1 Silent p.V745V 0.19 TCGA-D3-A8GB-06 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.14 deleterious(0) possibly_damaging(0.841) TCGA-D3-A8GB-06 3 97851733 97851733 G A OR5H1 Silent p.G64G 0.14 TCGA-D3-A8GB-06 3 97983223 97983223 G A OR5H6 Missense_Mutation p.G32E 0.16 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GB-06 3 9798642 9798642 C T OGG1 Intron 0.13 TCGA-D3-A8GB-06 3 9798643 9798643 C T OGG1 Intron 0.12 TCGA-D3-A8GB-06 4 100052726 100052726 C T ADH4 Missense_Mutation p.E258K 0.23 deleterious(0.04) benign(0.028) TCGA-D3-A8GB-06 4 100260854 100260854 G A ADH1C Missense_Mutation p.S328F 0.15 possibly_damaging(0.782) TCGA-D3-A8GB-06 4 101109230 101109230 C T DDIT4L Silent p.E62E 0.18 TCGA-D3-A8GB-06 4 101947095 101947095 G A PPP3CA Missense_Mutation p.S498F 0.16 deleterious_low_confidence(0.01) benign(0.197) TCGA-D3-A8GB-06 4 103553193 103553193 G A MANBA 3'UTR 0.19 TCGA-D3-A8GB-06 4 109674131 109674131 C T ETNPPL Missense_Mutation p.E180K 0.22 tolerated(0.24) possibly_damaging(0.764) TCGA-D3-A8GB-06 4 109675825 109675825 G A ETNPPL Missense_Mutation p.P151L 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GB-06 4 113298859 113298859 T C ALPK1 5'UTR 0.14 TCGA-D3-A8GB-06 4 113353367 113353367 C T ALPK1 Silent p.P888P 0.12 TCGA-D3-A8GB-06 4 124323682 124323682 C T SPRY1 Silent p.S312S 0.08 TCGA-D3-A8GB-06 4 125590289 125590289 G A ANKRD50 Silent p.V1381V 0.24 TCGA-D3-A8GB-06 4 128724806 128724806 C T HSPA4L Missense_Mutation p.P229L 0.06 deleterious(0.03) benign(0.082) TCGA-D3-A8GB-06 4 140441502 140441502 A T SETD7 Missense_Mutation p.F231I 0.10 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GB-06 4 141598087 141598087 C T TBC1D9 Silent p.K340K 0.09 TCGA-D3-A8GB-06 4 141888985 141888985 C T RNF150 Missense_Mutation p.G176E 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 4 144135534 144135534 C T USP38 Missense_Mutation p.S802L 0.14 tolerated(0.1) benign(0.098) TCGA-D3-A8GB-06 4 148968105 148968105 C T ARHGAP10 Missense_Mutation p.P644S 0.24 tolerated(0.4) benign(0.001) TCGA-D3-A8GB-06 4 149357814 149357814 T G NR3C2 Missense_Mutation p.K67Q 0.29 tolerated_low_confidence(0.27) possibly_damaging(0.788) TCGA-D3-A8GB-06 4 159048512 159048512 C T FAM198B 3'UTR 0.32 TCGA-D3-A8GB-06 4 159606336 159606336 G A ETFDH Missense_Mutation p.G191S 0.10 deleterious(0) probably_damaging(0.911) TCGA-D3-A8GB-06 4 159790399 159790399 C T FNIP2 Missense_Mutation p.P871S 0.10 deleterious(0.04) possibly_damaging(0.668) TCGA-D3-A8GB-06 4 165962393 165962393 G A TRIM60 Missense_Mutation p.R390Q 0.14 tolerated(0.25) benign(0.259) TCGA-D3-A8GB-06 4 166976333 166976333 G A TLL1 Missense_Mutation p.D544N 0.11 tolerated(0.21) benign(0.04) TCGA-D3-A8GB-06 4 167675834 167675834 C T SPOCK3 Nonsense_Mutation p.W255* 0.15 TCGA-D3-A8GB-06 4 177190112 177190112 C T ASB5 Missense_Mutation p.E50K 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 4 177249351 177249351 G T SPCS3 Missense_Mutation p.G138V 0.11 deleterious(0) possibly_damaging(0.905) TCGA-D3-A8GB-06 4 186545017 186545017 C T SORBS2 Silent p.Q618Q 0.11 TCGA-D3-A8GB-06 4 187004490 187004490 C T TLR3 Silent p.N550N 0.08 TCGA-D3-A8GB-06 4 187455499 187455499 G A MTNR1A Missense_Mutation p.L133F 0.12 tolerated(0.18) benign(0.049) TCGA-D3-A8GB-06 4 248363 248363 G A ZNF876P RNA 0.12 TCGA-D3-A8GB-06 4 24836629 24836629 G A CCDC149 Missense_Mutation p.S254L 0.09 deleterious(0.02) possibly_damaging(0.477) TCGA-D3-A8GB-06 4 26407852 26407852 C T RBPJ Missense_Mutation p.H52Y 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A8GB-06 4 36179575 36179575 G A ARAP2 Silent p.S577S 0.12 TCGA-D3-A8GB-06 4 40946901 40946901 G A APBB2 Missense_Mutation p.S342F 0.16 deleterious(0.03) possibly_damaging(0.646) TCGA-D3-A8GB-06 4 44450226 44450226 A G KCTD8 Silent p.L105L 0.23 TCGA-D3-A8GB-06 4 46307711 46307711 C T GABRA2 Missense_Mutation p.E193K 0.17 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GB-06 4 54373593 54373593 T A LNX1 Missense_Mutation p.K222N 0.08 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A8GB-06 4 56447062 56447062 C T PDCL2 Silent p.K48K 0.15 TCGA-D3-A8GB-06 4 68784829 68784829 C T TMPRSS11A Missense_Mutation p.D275N 0.19 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GB-06 4 68919717 68919717 C G TMPRSS11F Missense_Mutation p.W409C 0.16 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GB-06 4 69343140 69343140 C T TMPRSS11E Missense_Mutation p.S254L 0.20 deleterious(0.02) benign(0.004) TCGA-D3-A8GB-06 4 70071255 70071255 C T UGT2B11 Missense_Mutation p.D345N 0.12 tolerated(0.08) benign(0.008) TCGA-D3-A8GB-06 4 70155448 70155448 G A UGT2B28 Nonsense_Mutation p.W356* 0.11 TCGA-D3-A8GB-06 4 71250226 71250226 G A SMR3B 5'UTR 0.12 TCGA-D3-A8GB-06 4 71275275 71275275 G A PROL1 Missense_Mutation p.R77Q 0.14 tolerated_low_confidence(0.36) benign(0.003) TCGA-D3-A8GB-06 4 72425899 72425899 G A SLC4A4 Silent p.K1009K 0.15 TCGA-D3-A8GB-06 4 76846923 76846923 G A NAAA Missense_Mutation p.R211W 0.12 deleterious(0.02) possibly_damaging(0.579) TCGA-D3-A8GB-06 4 77324378 77324378 C T CCDC158 5'UTR 0.16 TCGA-D3-A8GB-06 4 83424221 83424221 G A TMEM150C Missense_Mutation p.S42L 0.14 tolerated(0.46) benign(0.001) TCGA-D3-A8GB-06 4 86852098 86852098 G A ARHGAP24 Intron 0.22 TCGA-D3-A8GB-06 4 96762364 96762364 C T PDHA2 Missense_Mutation p.P355S 0.21 deleterious(0.04) benign(0.23) TCGA-D3-A8GB-06 5 101576435 101576435 G A SLCO4C1 Silent p.V621V 0.14 TCGA-D3-A8GB-06 5 102894608 102894608 G A NUDT12 Silent p.A256A 0.11 TCGA-D3-A8GB-06 5 112349298 112349298 C T DCP2 3'UTR 0.23 TCGA-D3-A8GB-06 5 112770511 112770511 C T TSSK1B Missense_Mutation p.R9Q 0.19 deleterious(0.04) benign(0.01) TCGA-D3-A8GB-06 5 114612698 114612698 G A CCDC112 Nonsense_Mutation p.Q139* 0.11 TCGA-D3-A8GB-06 5 115323509 115323509 G A AQPEP Splice_Site p.X327_splice 0.18 TCGA-D3-A8GB-06 5 115323580 115323580 C T AQPEP Missense_Mutation p.P350L 0.11 deleterious(0.02) possibly_damaging(0.658) TCGA-D3-A8GB-06 5 118506610 118506610 C T DMXL1 Missense_Mutation p.R2042C 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 121767698 121767698 G A SNCAIP Missense_Mutation p.S406N 0.18 tolerated(0.08) possibly_damaging(0.59) TCGA-D3-A8GB-06 5 121780305 121780305 G A SNCAIP Silent p.G490G 0.17 TCGA-D3-A8GB-06 5 121780306 121780306 G A SNCAIP Missense_Mutation p.E491K 0.17 deleterious(0.03) possibly_damaging(0.626) TCGA-D3-A8GB-06 5 135567069 135567069 C T TRPC7 Missense_Mutation p.M671I 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GB-06 5 135651363 135651363 C T TRPC7 Silent p.V295V 0.09 TCGA-D3-A8GB-06 5 13735322 13735322 G A DNAH5 Silent p.F3893F 0.22 TCGA-D3-A8GB-06 5 137754902 137754902 G A KDM3B Silent p.K1232K 0.10 TCGA-D3-A8GB-06 5 140175897 140175897 G A PCDHA2 Missense_Mutation p.D450N 0.16 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-D3-A8GB-06 5 140187506 140187506 C T PCDHA4 Missense_Mutation p.T245I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-D3-A8GB-06 5 140257169 140257169 C T PCDHA12 Silent p.I704I 0.09 TCGA-D3-A8GB-06 5 140262894 140262894 C T PCDHA13 Silent p.A347A 0.22 TCGA-D3-A8GB-06 5 140482357 140482357 C T PCDHB3 Silent p.F708F 0.13 TCGA-D3-A8GB-06 5 140557629 140557629 G A PCDHB8 Missense_Mutation p.G5E 0.08 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GB-06 5 140579361 140579361 G A PCDHB11 Missense_Mutation p.G5E 0.12 tolerated_low_confidence(1) benign(0.002) TCGA-D3-A8GB-06 5 140588661 140588661 C T PCDHB12 Missense_Mutation p.S61L 0.14 deleterious_low_confidence(0.05) benign(0.014) TCGA-D3-A8GB-06 5 140720239 140720239 C T PCDHGA2 Silent p.F567F 0.13 TCGA-D3-A8GB-06 5 140720848 140720848 C A PCDHGA2 Missense_Mutation p.F770L 0.10 deleterious_low_confidence(0) benign(0.216) TCGA-D3-A8GB-06 5 140794648 140794648 C T PCDHGA10 Silent p.L636L 0.15 TCGA-D3-A8GB-06 5 140866732 140866732 C T PCDHGC4 Silent p.S664S 0.16 TCGA-D3-A8GB-06 5 141059176 141059176 C T ARAP3 Missense_Mutation p.G212R 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.793) TCGA-D3-A8GB-06 5 143541839 143541839 C T YIPF5 Missense_Mutation p.G185E 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 14363991 14363991 C T TRIO Nonsense_Mutation p.Q848* 0.21 TCGA-D3-A8GB-06 5 143853596 143853596 C T KCTD16 Silent p.F402F 0.11 TCGA-D3-A8GB-06 5 1441591 1441591 G A SLC6A3 Missense_Mutation p.P101S 0.12 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GB-06 5 145979966 145979966 G A PPP2R2B Missense_Mutation p.S286L 0.19 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GB-06 5 147491417 147491417 G A SPINK5 Silent p.G593G 0.19 TCGA-D3-A8GB-06 5 147549310 147549310 C T SPINK14 Silent p.F5F 0.11 TCGA-D3-A8GB-06 5 149313491 149313491 A G PDE6A Splice_Site p.X239_splice 0.13 TCGA-D3-A8GB-06 5 149323835 149323835 G A PDE6A Silent p.F134F 0.11 TCGA-D3-A8GB-06 5 151231066 151231066 G A GLRA1 Missense_Mutation p.S266L 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 151784339 151784339 G A NMUR2 Silent p.F112F 0.11 TCGA-D3-A8GB-06 5 155091 155091 G A PLEKHG4B Nonsense_Mutation p.W342* 0.28 TCGA-D3-A8GB-06 5 156918887 156918887 A C ADAM19 Missense_Mutation p.F648V 0.14 tolerated(0.37) benign(0.073) TCGA-D3-A8GB-06 5 160763709 160763709 C T GABRB2 Silent p.T203T 0.17 TCGA-D3-A8GB-06 5 161116308 161116308 G A GABRA6 Missense_Mutation p.M165I 0.15 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GB-06 5 161116309 161116309 G A GABRA6 Missense_Mutation p.D166N 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 5 167858387 167858387 C T WWC1 Missense_Mutation p.H740Y 0.08 tolerated(0.49) benign(0.004) TCGA-D3-A8GB-06 5 168175378 168175378 C T SLIT3 Silent p.E733E 0.12 TCGA-D3-A8GB-06 5 178408689 178408689 G A GRM6 Missense_Mutation p.P868L 0.09 deleterious(0.03) benign(0.055) TCGA-D3-A8GB-06 5 178408690 178408690 G A GRM6 Missense_Mutation p.P868S 0.10 tolerated(0.21) benign(0.001) TCGA-D3-A8GB-06 5 178459672 178459672 C T ZNF879 Silent p.F241F 0.33 TCGA-D3-A8GB-06 5 178552168 178552168 C T ADAMTS2 Missense_Mutation p.E922K 0.16 deleterious(0) possibly_damaging(0.804) TCGA-D3-A8GB-06 5 179249968 179249968 G C SQSTM1 Silent p.G72G 0.16 TCGA-D3-A8GB-06 5 23522803 23522803 G A PRDM9 Missense_Mutation p.D231N 0.18 tolerated(0.06) benign(0.001) TCGA-D3-A8GB-06 5 24487852 24487852 C T CDH10 Missense_Mutation p.D763N 0.21 tolerated(0.18) probably_damaging(0.989) TCGA-D3-A8GB-06 5 37022155 37022155 C T NIPBL Silent p.I1777I 0.18 TCGA-D3-A8GB-06 5 37201695 37201695 C T C5orf42 Missense_Mutation p.E1169K 0.14 deleterious(0) probably_damaging(0.923) TCGA-D3-A8GB-06 5 39110462 39110462 C T FYB Missense_Mutation p.D821N 0.17 tolerated(0.13) possibly_damaging(0.623) TCGA-D3-A8GB-06 5 40681383 40681383 C T PTGER4 Silent p.T96T 0.21 TCGA-D3-A8GB-06 5 41039558 41039558 G A MROH2B Nonsense_Mutation p.R685* 0.19 TCGA-D3-A8GB-06 5 41057268 41057268 G A MROH2B Missense_Mutation p.P288S 0.19 tolerated(0.49) benign(0.098) TCGA-D3-A8GB-06 5 5303701 5303701 G A ADAMTS16 Missense_Mutation p.G1003E 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GB-06 5 54572228 54572228 G A DHX29 Missense_Mutation p.H765Y 0.06 deleterious(0.04) benign(0.022) TCGA-D3-A8GB-06 5 61676963 61676963 G A KIF2A Missense_Mutation p.E678K 0.24 tolerated(0.22) benign(0.365) TCGA-D3-A8GB-06 5 64892937 64892937 T C TRIM23 Missense_Mutation p.K417R 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 5 68558047 68558047 C T CDK7 Silent p.P181P 0.17 TCGA-D3-A8GB-06 5 70308271 70308271 C T NAIP Missense_Mutation p.E158K 0.07 tolerated(0.06) benign(0.093) TCGA-D3-A8GB-06 5 71740024 71740024 C T ZNF366 Silent p.R598R 0.16 TCGA-D3-A8GB-06 5 74009432 74009432 C T HEXB Silent p.T291T 0.10 TCGA-D3-A8GB-06 5 75886328 75886328 T A IQGAP2 Missense_Mutation p.L246I 0.11 tolerated(0.13) benign(0.028) TCGA-D3-A8GB-06 5 76645299 76645299 G A PDE8B Missense_Mutation p.G311E 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 79797650 79797650 A T FAM151B Missense_Mutation p.N22I 0.08 tolerated(0.19) benign(0.01) TCGA-D3-A8GB-06 5 80604786 80604786 G C ZCCHC9 Missense_Mutation p.C186S 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 85915186 85915186 T G COX7C Missense_Mutation p.V31G 0.19 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A8GB-06 5 89938843 89938843 G A GPR98 Silent p.L846L 0.12 TCGA-D3-A8GB-06 5 89943415 89943415 G A GPR98 Silent p.K1041K 0.11 TCGA-D3-A8GB-06 5 95124553 95124553 G A RHOBTB3 Missense_Mutation p.D571N 0.19 tolerated(0.08) benign(0.032) TCGA-D3-A8GB-06 5 95746584 95746584 G A PCSK1 Missense_Mutation p.S330F 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 5 95761548 95761548 G A PCSK1 Silent p.P124P 0.12 TCGA-D3-A8GB-06 6 100056633 100056633 G A PRDM13 Missense_Mutation p.G54E 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 6 100369124 100369124 G A MCHR2 Missense_Mutation p.P239S 0.17 tolerated(0.49) benign(0.009) TCGA-D3-A8GB-06 6 100838752 100838752 T C SIM1 Missense_Mutation p.N596D 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-D3-A8GB-06 6 107232086 107232086 C A MIR587 RNA 0.21 TCGA-D3-A8GB-06 6 117249977 117249977 G A RFX6 Silent p.V818V 0.14 TCGA-D3-A8GB-06 6 117681548 117681548 C T ROS1 Silent p.K1134K 0.13 TCGA-D3-A8GB-06 6 121402030 121402030 C A TBC1D32 Missense_Mutation p.A1221S 0.11 tolerated(0.13) benign(0.249) TCGA-D3-A8GB-06 6 129649502 129649502 C T LAMA2 Missense_Mutation p.P1419L 0.19 deleterious(0.04) benign(0.091) TCGA-D3-A8GB-06 6 130761781 130761781 T A TMEM200A Missense_Mutation p.S72T 0.08 tolerated(0.08) possibly_damaging(0.629) TCGA-D3-A8GB-06 6 130763021 130763021 G A TMEM200A Missense_Mutation p.G485E 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GB-06 6 133015222 133015222 G A VNN1 Silent p.T147T 0.12 TCGA-D3-A8GB-06 6 133846392 133846392 G A EYA4 Silent p.K613K 0.17 TCGA-D3-A8GB-06 6 136552387 136552387 G C MTFR2 3'UTR 0.32 TCGA-D3-A8GB-06 6 136742874 136742874 G A MAP7 Missense_Mutation p.S66L 0.12 tolerated(0.07) benign(0.042) TCGA-D3-A8GB-06 6 138200157 138200157 C T TNFAIP3 Silent p.L525L 0.15 TCGA-D3-A8GB-06 6 143816801 143816801 T A FUCA2 3'UTR 0.11 TCGA-D3-A8GB-06 6 151121907 151121907 T A PLEKHG1 Missense_Mutation p.F228I 0.20 deleterious(0.01) possibly_damaging(0.866) TCGA-D3-A8GB-06 6 151151795 151151795 T C PLEKHG1 Silent p.S516S 0.15 TCGA-D3-A8GB-06 6 155749951 155749951 G A NOX3 Silent p.L374L 0.14 TCGA-D3-A8GB-06 6 159188085 159188085 G A EZR Missense_Mutation p.A541V 0.14 tolerated(0.61) possibly_damaging(0.479) TCGA-D3-A8GB-06 6 159407403 159407403 C T RSPH3 Silent p.K227K 0.16 TCGA-D3-A8GB-06 6 163510319 163510319 C T PACRG Silent p.V164V 0.15 TCGA-D3-A8GB-06 6 166571978 166571978 C T T Missense_Mutation p.G378D 0.23 deleterious(0) possibly_damaging(0.764) TCGA-D3-A8GB-06 6 170160040 170160040 A T ERMARD Missense_Mutation p.T238S 0.16 tolerated(0.11) benign(0.013) TCGA-D3-A8GB-06 6 22287664 22287664 C T PRL Silent p.L217L 0.15 TCGA-D3-A8GB-06 6 24178707 24178707 C T DCDC2 Missense_Mutation p.D393N 0.17 tolerated_low_confidence(0.26) benign(0.075) TCGA-D3-A8GB-06 6 25820055 25820055 C T SLC17A1 Missense_Mutation p.G99E 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 6 26508292 26508292 G A BTN1A1 Nonsense_Mutation p.W295* 0.11 TCGA-D3-A8GB-06 6 27778143 27778143 G A HIST1H3H Missense_Mutation p.E98K 0.24 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-D3-A8GB-06 6 28251719 28251719 C T PGBD1 Silent p.C43C 0.18 TCGA-D3-A8GB-06 6 30136223 30136223 G A TRIM15 Silent p.K208K 0.23 TCGA-D3-A8GB-06 6 30136224 30136224 G A TRIM15 Missense_Mutation p.V209I 0.19 tolerated(0.19) benign(0.007) TCGA-D3-A8GB-06 6 30879010 30879010 C T GTF2H4 Silent p.L212L 0.12 TCGA-D3-A8GB-06 6 30887595 30887595 G A VARS2 Missense_Mutation p.D409N 0.18 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GB-06 6 31612726 31612726 G A BAG6 Nonsense_Mutation p.Q462* 0.11 TCGA-D3-A8GB-06 6 31833759 31833759 G A SLC44A4 Silent p.L460L 0.14 TCGA-D3-A8GB-06 6 31833760 31833760 G A SLC44A4 Silent p.A459A 0.14 TCGA-D3-A8GB-06 6 32147679 32147679 G A RNF5 Missense_Mutation p.G100S 0.10 deleterious(0) possibly_damaging(0.742) TCGA-D3-A8GB-06 6 32816469 32816469 G A TAP1 Missense_Mutation p.S569F 0.11 deleterious(0.02) benign(0.196) TCGA-D3-A8GB-06 6 35211482 35211482 G A SCUBE3 Missense_Mutation p.G674E 0.09 tolerated(0.3) benign(0.41) TCGA-D3-A8GB-06 6 35543552 35543552 G A FKBP5 3'UTR 0.13 TCGA-D3-A8GB-06 6 36294870 36294870 C T C6orf222 Silent p.Q243Q 0.16 TCGA-D3-A8GB-06 6 36298128 36298128 C T C6orf222 Missense_Mutation p.E114K 0.11 deleterious(0) benign(0.024) TCGA-D3-A8GB-06 6 3850464 3850464 G A FAM50B Missense_Mutation p.G140E 0.20 tolerated(0.4) benign(0.102) TCGA-D3-A8GB-06 6 38691148 38691148 G A DNAH8 5'UTR 0.16 TCGA-D3-A8GB-06 6 38810582 38810582 C T DNAH8 Missense_Mutation p.S1366F 0.12 benign(0.141) TCGA-D3-A8GB-06 6 38810583 38810583 C T DNAH8 Silent p.S1366S 0.12 TCGA-D3-A8GB-06 6 41129281 41129281 G A TREM2 Silent p.P37P 0.21 TCGA-D3-A8GB-06 6 42196249 42196249 G A TRERF1 Missense_Mutation p.P1146L 0.19 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A8GB-06 6 42689635 42689635 G A PRPH2 Silent p.T146T 0.15 TCGA-D3-A8GB-06 6 4892537 4892537 G A CDYL Silent p.R205R 0.13 TCGA-D3-A8GB-06 6 49415411 49415411 C T MUT Missense_Mutation p.R511Q 0.14 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-D3-A8GB-06 6 50683309 50683309 G A TFAP2D Missense_Mutation p.G174R 0.22 deleterious(0.05) benign(0.028) TCGA-D3-A8GB-06 6 52142360 52142360 G A MCM3 Missense_Mutation p.R381C 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 6 5369155 5369155 C T FARS2 Missense_Mutation p.P118S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GB-06 6 54173485 54173485 G A TINAG Missense_Mutation p.R46Q 0.17 deleterious(0.03) probably_damaging(0.964) TCGA-D3-A8GB-06 6 54208112 54208112 A T TINAG Missense_Mutation p.K238I 0.15 deleterious(0.02) possibly_damaging(0.863) TCGA-D3-A8GB-06 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.14 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GB-06 6 55223885 55223885 G A GFRAL Missense_Mutation p.E301K 0.12 deleterious(0.03) possibly_damaging(0.876) TCGA-D3-A8GB-06 6 55300444 55300444 C T HMGCLL1 3'UTR 0.12 TCGA-D3-A8GB-06 6 55406938 55406938 C T HMGCLL1 Missense_Mutation p.E67K 0.17 tolerated_low_confidence(0.19) benign(0.005) TCGA-D3-A8GB-06 6 56469090 56469090 G A DST Intron 0.19 TCGA-D3-A8GB-06 6 63990484 63990484 C T LGSN Silent p.K324K 0.16 TCGA-D3-A8GB-06 6 71004056 71004056 C T COL9A1 Silent p.S170S 0.10 TCGA-D3-A8GB-06 6 74227886 74227886 T A EEF1A1 Missense_Mutation p.E377D 0.18 deleterious_low_confidence(0.02) benign(0.183) TCGA-D3-A8GB-06 6 7585571 7585571 G A DSP Silent p.Q2692Q 0.10 TCGA-D3-A8GB-06 6 8080218 8080218 G A EEF1E1 Missense_Mutation p.R144C 0.12 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GB-06 6 84234178 84234178 G A PRSS35 Missense_Mutation p.D340N 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 6 85457686 85457686 G T TBX18 Silent p.S297S 0.13 TCGA-D3-A8GB-06 6 87994520 87994520 C T GJB7 Missense_Mutation p.M37I 0.13 tolerated(0.12) benign(0.002) TCGA-D3-A8GB-06 6 88173915 88173915 G A C6ORF165 Missense_Mutation p.E606K 0.08 tolerated(1) benign(0) TCGA-D3-A8GB-06 6 89862781 89862781 G A PM20D2 Missense_Mutation p.G212R 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 6 89862782 89862782 G A PM20D2 Missense_Mutation p.G212E 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 6 89888645 89888645 G A GABRR1 Silent p.T428T 0.13 TCGA-D3-A8GB-06 6 90384235 90384235 G A MDN1 Missense_Mutation p.P4279S 0.12 probably_damaging(0.995) TCGA-D3-A8GB-06 6 90491144 90491144 G A MDN1 Silent p.T539T 0.19 TCGA-D3-A8GB-06 6 94068057 94068057 G A EPHA7 Missense_Mutation p.S302F 0.11 deleterious(0) possibly_damaging(0.678) TCGA-D3-A8GB-06 6 96652150 96652150 G A FUT9 3'UTR 0.17 TCGA-D3-A8GB-06 7 102087396 102087396 C T ORAI2 Missense_Mutation p.S221F 0.19 deleterious(0) possibly_damaging(0.803) TCGA-D3-A8GB-06 7 103322668 103322668 C T RELN Missense_Mutation p.G395E 0.17 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-D3-A8GB-06 7 107678038 107678038 C T LAMB4 Missense_Mutation p.E1492K 0.10 deleterious(0.02) possibly_damaging(0.859) TCGA-D3-A8GB-06 7 108524062 108524062 C T C7orf66 3'UTR 0.12 TCGA-D3-A8GB-06 7 113519311 113519311 C T PPP1R3A Silent p.G612G 0.26 TCGA-D3-A8GB-06 7 113558488 113558488 G A PPP1R3A Silent p.F188F 0.14 TCGA-D3-A8GB-06 7 11632909 11632909 G A THSD7A Nonsense_Mutation p.Q415* 0.22 TCGA-D3-A8GB-06 7 120387741 120387741 C T KCND2 Silent p.S574S 0.26 TCGA-D3-A8GB-06 7 120780983 120780983 C T CPED1 Missense_Mutation p.P601L 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 7 121650725 121650725 C T PTPRZ1 Missense_Mutation p.S542F 0.15 tolerated(0.39) benign(0.008) TCGA-D3-A8GB-06 7 122342791 122342791 C T RNF148 Missense_Mutation p.R5K 0.60 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GB-06 7 122342792 122342792 T A RNF148 Nonsense_Mutation p.R5* 0.64 TCGA-D3-A8GB-06 7 12684225 12684225 C T SCIN Silent p.S592S 0.11 TCGA-D3-A8GB-06 7 128801527 128801527 C T TSPAN33 Missense_Mutation p.S37F 0.29 deleterious(0) probably_damaging(0.926) TCGA-D3-A8GB-06 7 130023612 130023612 G A CPA1 Missense_Mutation p.G225S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 7 130023613 130023613 G A CPA1 Missense_Mutation p.G225D 0.30 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GB-06 7 131196148 131196148 G A PODXL Missense_Mutation p.P49S 0.24 tolerated_low_confidence(0.33) benign(0.002) TCGA-D3-A8GB-06 7 132192787 132192787 G A PLXNA4 Silent p.F222F 0.17 TCGA-D3-A8GB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GB-06 7 141754666 141754666 C T MGAM Missense_Mutation p.P1091L 0.23 deleterious(0) possibly_damaging(0.835) TCGA-D3-A8GB-06 7 142099563 142099563 G A TRBV7-8 Missense_Mutation p.P80L 0.14 tolerated(0.23) benign(0.139) TCGA-D3-A8GB-06 7 142120115 142120115 G A TRBV7-7 Missense_Mutation p.H18Y 0.11 tolerated(0.79) benign(0.025) TCGA-D3-A8GB-06 7 142120318 142120318 C T TRBV7-7 Missense_Mutation p.G2S 0.22 tolerated(0.06) benign(0.099) TCGA-D3-A8GB-06 7 142206641 142206641 C T TRBV10-2 Missense_Mutation p.D72N 0.35 tolerated(0.91) benign(0.005) TCGA-D3-A8GB-06 7 142458495 142458495 G T PRSS1 Missense_Mutation p.G44C 0.20 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GB-06 7 142458496 142458496 G A PRSS1 Missense_Mutation p.G44D 0.20 deleterious(0.02) benign(0.319) TCGA-D3-A8GB-06 7 142609653 142609653 C T TRPV5 Missense_Mutation p.A595T 0.10 tolerated(0.13) probably_damaging(0.979) TCGA-D3-A8GB-06 7 143098571 143098571 G A EPHA1 Missense_Mutation p.S93F 0.16 deleterious(0.03) benign(0.056) TCGA-D3-A8GB-06 7 143701864 143701864 C T OR6B1 Nonsense_Mutation p.R259* 0.12 TCGA-D3-A8GB-06 7 143701907 143701907 C T OR6B1 Missense_Mutation p.S273F 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 7 143826301 143826301 C T OR2A14 Silent p.A32A 0.26 TCGA-D3-A8GB-06 7 144059902 144059902 C T ARHGEF5 Missense_Mutation p.S47F 0.22 tolerated(0.08) benign(0.305) TCGA-D3-A8GB-06 7 146825904 146825904 G A CNTNAP2 Silent p.R353R 0.08 TCGA-D3-A8GB-06 7 148709308 148709308 G A PDIA4 Silent p.P253P 0.19 TCGA-D3-A8GB-06 7 148709309 148709309 G A PDIA4 Missense_Mutation p.P253L 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 7 149493687 149493687 C T SSPO RNA 0.21 TCGA-D3-A8GB-06 7 150714319 150714319 C - ATG9B Frame_Shift_Del p.R698Lfs*11 0.09 TCGA-D3-A8GB-06 7 150779354 150779354 C T TMUB1 Silent p.P99P 0.13 TCGA-D3-A8GB-06 7 154172098 154172098 G A DPP6 Missense_Mutation p.D145N 0.14 tolerated(0.15) benign(0.226) TCGA-D3-A8GB-06 7 155530868 155530868 C T RBM33 Missense_Mutation p.P503L 0.12 deleterious(0.01) possibly_damaging(0.851) TCGA-D3-A8GB-06 7 18625058 18625058 C T HDAC9 Silent p.I59I 0.08 TCGA-D3-A8GB-06 7 21781628 21781628 C T DNAH11 Silent p.F2673F 0.14 TCGA-D3-A8GB-06 7 21906207 21906207 G A DNAH11 Nonsense_Mutation p.W3879* 0.10 TCGA-D3-A8GB-06 7 23792436 23792436 T C STK31 Missense_Mutation p.I373T 0.18 tolerated(0.32) benign(0.004) TCGA-D3-A8GB-06 7 23792437 23792437 A T STK31 Silent p.I373I 0.18 TCGA-D3-A8GB-06 7 2473057 2473057 G A CHST12 Silent p.L261L 0.19 TCGA-D3-A8GB-06 7 26412323 26412323 T G SNX10 3'UTR 0.21 TCGA-D3-A8GB-06 7 27147568 27147568 C T HOXA3 Missense_Mutation p.R433K 0.21 deleterious(0.04) benign(0.286) TCGA-D3-A8GB-06 7 33014970 33014970 C T FKBP9 Silent p.L182L 0.23 TCGA-D3-A8GB-06 7 34192938 34192938 G A BMPER 3'UTR 0.19 TCGA-D3-A8GB-06 7 37889863 37889863 A T NME8 Intron 0.11 TCGA-D3-A8GB-06 7 4169563 4169563 G A SDK1 Silent p.L1321L 0.17 TCGA-D3-A8GB-06 7 43351643 43351643 G T HECW1 Missense_Mutation p.K103N 0.16 deleterious(0) probably_damaging(0.91) TCGA-D3-A8GB-06 7 44608749 44608749 C T DDX56 Missense_Mutation p.G425S 0.14 tolerated(0.19) benign(0.012) TCGA-D3-A8GB-06 7 48391886 48391886 G A ABCA13 Missense_Mutation p.R3497Q 0.16 probably_damaging(1) TCGA-D3-A8GB-06 7 5103866 5103866 C T RBAK Missense_Mutation p.P260L 0.16 tolerated(0.16) probably_damaging(0.997) TCGA-D3-A8GB-06 7 5254151 5254151 C T WIPI2 Intron 0.10 TCGA-D3-A8GB-06 7 55211104 55211104 C T EGFR Missense_Mutation p.S116F 0.11 tolerated(0.06) benign(0.004) TCGA-D3-A8GB-06 7 63727119 63727119 C T ZNF679 Missense_Mutation p.H370Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 7 66104276 66104276 C T KCTD7 3'UTR 0.22 TCGA-D3-A8GB-06 7 6805411 6805411 G A RSPH10B2 Nonsense_Mutation p.W216* 0.14 TCGA-D3-A8GB-06 7 71488740 71488740 C T CALN1 Missense_Mutation p.D135N 0.16 deleterious(0.01) benign(0.012) TCGA-D3-A8GB-06 7 73771658 73771658 G A CLIP2 Missense_Mutation p.A356T 0.18 deleterious(0.01) possibly_damaging(0.752) TCGA-D3-A8GB-06 7 76891561 76891561 C T CCDC146 Silent p.L370L 0.26 TCGA-D3-A8GB-06 7 80301321 80301321 G A CD36 Missense_Mutation p.E364K 0.16 tolerated(0.33) benign(0.1) TCGA-D3-A8GB-06 7 82579871 82579871 C T PCLO Missense_Mutation p.E3345K 0.13 unknown(0) TCGA-D3-A8GB-06 7 82579872 82579872 C T PCLO Silent p.L3344L 0.13 TCGA-D3-A8GB-06 7 82582863 82582863 C A PCLO Missense_Mutation p.R2469I 0.19 unknown(0) TCGA-D3-A8GB-06 7 82584306 82584306 C T PCLO Missense_Mutation p.G1988E 0.08 unknown(0) TCGA-D3-A8GB-06 7 82595418 82595418 G A PCLO Missense_Mutation p.S1229F 0.17 unknown(0) TCGA-D3-A8GB-06 7 82764151 82764151 G A PCLO Silent p.F905F 0.13 TCGA-D3-A8GB-06 7 84685053 84685053 G A SEMA3D Nonsense_Mutation p.R281* 0.15 TCGA-D3-A8GB-06 7 86415776 86415776 G A GRM3 Missense_Mutation p.G223E 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 7 87370852 87370852 C T RUNDC3B Missense_Mutation p.P213S 0.26 deleterious(0.03) benign(0.298) TCGA-D3-A8GB-06 7 97616408 97616408 G A OCM2 Silent p.S85S 0.06 TCGA-D3-A8GB-06 7 98509717 98509717 C T TRRAP Missense_Mutation p.L694F 0.15 probably_damaging(0.993) TCGA-D3-A8GB-06 7 99303061 99303061 G A CYP3A7 3'UTR 0.25 TCGA-D3-A8GB-06 7 99818253 99818253 G A PVRIG Missense_Mutation p.G185S 0.29 deleterious(0.01) benign(0.198) TCGA-D3-A8GB-06 7 99818254 99818254 G A PVRIG Missense_Mutation p.G185D 0.28 deleterious(0) benign(0.007) TCGA-D3-A8GB-06 8 100654465 100654465 C T VPS13B Missense_Mutation p.P1908S 0.09 tolerated(0.24) benign(0.003) TCGA-D3-A8GB-06 8 101054110 101054110 G A RGS22 Missense_Mutation p.H620Y 0.20 tolerated(0.21) benign(0.328) TCGA-D3-A8GB-06 8 103220495 103220495 G A RRM2B Missense_Mutation p.P308S 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-D3-A8GB-06 8 10623311 10623311 G A PINX1 Missense_Mutation p.P196L 0.15 tolerated(0.31) benign(0.001) TCGA-D3-A8GB-06 8 110408344 110408344 C T PKHD1L1 Silent p.F300F 0.50 TCGA-D3-A8GB-06 8 110431368 110431368 G A PKHD1L1 Silent p.T801T 0.16 TCGA-D3-A8GB-06 8 113516034 113516034 G A CSMD3 Missense_Mutation p.H1690Y 0.18 tolerated(0.72) possibly_damaging(0.842) TCGA-D3-A8GB-06 8 11995046 11995046 G A USP17L2 Silent p.L408L 0.18 TCGA-D3-A8GB-06 8 11995795 11995795 C T USP17L2 Missense_Mutation p.E159K 0.17 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GB-06 8 124243620 124243620 G A C8orf76 Silent p.I245I 0.19 TCGA-D3-A8GB-06 8 125076751 125076751 C T FER1L6 Silent p.S1164S 0.11 TCGA-D3-A8GB-06 8 125551345 125551345 C T TATDN1 5'Flank 0.16 TCGA-D3-A8GB-06 8 126369993 126369993 C T NSMCE2 Missense_Mutation p.H187Y 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 8 133941415 133941415 C T TG Silent p.F1598F 0.20 TCGA-D3-A8GB-06 8 135612753 135612753 G A ZFAT Missense_Mutation p.P801S 0.13 tolerated(0.39) possibly_damaging(0.634) TCGA-D3-A8GB-06 8 13948106 13948106 G A SGCZ Missense_Mutation p.P262L 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A8GB-06 8 142178356 142178356 G A DENND3 Silent p.R589R 0.16 TCGA-D3-A8GB-06 8 145060428 145060428 G A PARP10 Intron 0.10 TCGA-D3-A8GB-06 8 145753251 145753251 C T C8orf82 Intron 0.22 TCGA-D3-A8GB-06 8 17055149 17055149 C T ZDHHC2 Silent p.S144S 0.19 TCGA-D3-A8GB-06 8 23003422 23003422 C T TNFRSF10D Silent p.G165G 0.16 TCGA-D3-A8GB-06 8 23198687 23198687 C T LOXL2 Silent p.R187R 0.13 TCGA-D3-A8GB-06 8 24321470 24321470 C T ADAM7 Silent p.I103I 0.16 TCGA-D3-A8GB-06 8 24346676 24346676 C T ADAM7 Missense_Mutation p.P366S 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GB-06 8 25189805 25189805 C T DOCK5 Nonsense_Mutation p.Q648* 0.14 TCGA-D3-A8GB-06 8 26505265 26505265 C T DPYSL2 Silent p.V410V 0.11 TCGA-D3-A8GB-06 8 27321248 27321248 C T CHRNA2 Missense_Mutation p.G238S 0.07 deleterious(0.01) possibly_damaging(0.811) TCGA-D3-A8GB-06 8 27891195 27891195 C T NUGGC Missense_Mutation p.G544D 0.11 deleterious(0) possibly_damaging(0.829) TCGA-D3-A8GB-06 8 3165278 3165278 G A CSMD1 Missense_Mutation p.P1297S 0.12 probably_damaging(0.967) TCGA-D3-A8GB-06 8 37697673 37697673 C G GPR124 Missense_Mutation p.T849R 0.14 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GB-06 8 38275843 38275843 G A FGFR1 Missense_Mutation p.R476W 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 8 39604032 39604032 G A ADAM2 Silent p.F711F 0.15 TCGA-D3-A8GB-06 8 42587438 42587438 C T CHRNB3 Missense_Mutation p.P330S 0.13 tolerated(0.34) benign(0.36) TCGA-D3-A8GB-06 8 43053065 43053065 C T HGSNAT Silent p.L566L 0.21 TCGA-D3-A8GB-06 8 51306801 51306801 G A SNTG1 Translation_Start_Site p.M1? 0.11 tolerated_low_confidence(0.14) benign(0.001) TCGA-D3-A8GB-06 8 51306802 51306802 G A SNTG1 Missense_Mutation p.D2N 0.11 tolerated_low_confidence(0.18) benign(0.001) TCGA-D3-A8GB-06 8 52320904 52320904 C T PXDNL Missense_Mutation p.E1094K 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 8 55541352 55541352 G A RP1 Missense_Mutation p.G1637D 0.18 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GB-06 8 56912055 56912055 C T LYN Missense_Mutation p.S428F 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 8 57079716 57079716 G A PLAG1 Nonsense_Mutation p.R197* 0.18 TCGA-D3-A8GB-06 8 59852082 59852082 C T TOX Missense_Mutation p.E64K 0.13 deleterious(0.02) probably_damaging(0.931) TCGA-D3-A8GB-06 8 61765807 61765807 G A CHD7 Missense_Mutation p.V2175M 0.11 benign(0.109) TCGA-D3-A8GB-06 8 63939815 63939815 G A GGH Silent p.F95F 0.17 TCGA-D3-A8GB-06 8 67064666 67064666 G A TRIM55 Missense_Mutation p.G347E 0.16 tolerated(0.79) benign(0.001) TCGA-D3-A8GB-06 8 6728221 6728221 C T DEFB1 Silent p.K63K 0.14 TCGA-D3-A8GB-06 8 68658463 68658463 G A CPA6 5'UTR 0.20 TCGA-D3-A8GB-06 8 73849176 73849176 C T KCNB2 Missense_Mutation p.S529F 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-D3-A8GB-06 8 77618771 77618771 G A ZFHX4 Silent p.A816A 0.29 TCGA-D3-A8GB-06 8 87591451 87591451 C T CNGB3 Missense_Mutation p.R604Q 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GB-06 8 93029461 93029461 C T RUNX1T1 Silent p.P84P 0.09 TCGA-D3-A8GB-06 9 101611284 101611284 G A GALNT12 Silent p.R552R 0.19 TCGA-D3-A8GB-06 9 107331634 107331634 C T OR13C8 Silent p.F62F 0.15 TCGA-D3-A8GB-06 9 113704247 113704247 G A LPAR1 Missense_Mutation p.P83S 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 9 116836428 116836428 C T AMBP Nonsense_Mutation p.W114* 0.33 TCGA-D3-A8GB-06 9 117094141 117094141 G A ORM2 Missense_Mutation p.E158K 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GB-06 9 117853344 117853344 G A TNC 5'UTR 0.29 TCGA-D3-A8GB-06 9 119093563 119093563 C T PAPPA Missense_Mutation p.S1063F 0.10 tolerated(0.18) possibly_damaging(0.485) TCGA-D3-A8GB-06 9 123780031 123780031 G A C5 Missense_Mutation p.P536S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 9 124535019 124535019 C T DAB2IP Nonsense_Mutation p.Q710* 0.18 TCGA-D3-A8GB-06 9 125316378 125316378 G A OR1N2 Silent p.R310R 0.13 TCGA-D3-A8GB-06 9 125673475 125673475 G A ZBTB6 Silent p.L293L 0.15 TCGA-D3-A8GB-06 9 132637589 132637589 G A USP20 Silent p.R683R 0.36 TCGA-D3-A8GB-06 9 133346269 133346269 G A ASS1 Missense_Mutation p.D182N 0.20 deleterious(0) possibly_damaging(0.735) TCGA-D3-A8GB-06 9 139911574 139911574 G A ABCA2 Silent p.S852S 0.12 TCGA-D3-A8GB-06 9 139929171 139929171 C T C9orf139 Missense_Mutation p.P80S 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.803) TCGA-D3-A8GB-06 9 140145846 140145846 C T C9orf173 Silent p.T36T 0.18 TCGA-D3-A8GB-06 9 140145847 140145847 C T C9orf173 Nonsense_Mutation p.Q37* 0.18 TCGA-D3-A8GB-06 9 33441952 33441952 C T AQP3 3'UTR 0.21 TCGA-D3-A8GB-06 9 34379701 34379701 C T C9orf24 Silent p.R244R 0.13 TCGA-D3-A8GB-06 9 34379702 34379702 C T C9orf24 Missense_Mutation p.R244Q 0.13 tolerated(0.11) possibly_damaging(0.776) TCGA-D3-A8GB-06 9 35826156 35826156 C T FAM221B Translation_Start_Site p.M1? 0.17 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GB-06 9 37719079 37719079 C T FRMPD1 Missense_Mutation p.S141L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GB-06 9 8375966 8375966 G A PTPRD Missense_Mutation p.P1544L 0.18 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A8GB-06 9 85862877 85862877 C T FRMD3 Missense_Mutation p.A584T 0.15 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A8GB-06 9 85950508 85950508 G A FRMD3 Silent p.I173I 0.16 TCGA-D3-A8GB-06 X 100879973 100879973 G A ARMCX3 Missense_Mutation p.G2S 0.35 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A8GB-06 X 102005169 102005169 C T BHLHB9 Missense_Mutation p.P416S 0.28 tolerated(0.56) probably_damaging(1) TCGA-D3-A8GB-06 X 105277537 105277537 C T SERPINA7 Missense_Mutation p.R401K 0.29 tolerated(0.21) benign(0.025) TCGA-D3-A8GB-06 X 108867935 108867935 C T KCNE1L Silent p.P105P 0.57 TCGA-D3-A8GB-06 X 115574857 115574857 C T SLC6A14 Silent p.I185I 0.37 TCGA-D3-A8GB-06 X 117043518 117043518 G A KLHL13 Missense_Mutation p.S374L 0.36 tolerated(0.32) benign(0.016) TCGA-D3-A8GB-06 X 118921414 118921414 C A RPL39 Intron 0.36 TCGA-D3-A8GB-06 X 123518039 123518039 C T TENM1 Missense_Mutation p.A2248T 0.26 tolerated(0.26) benign(0.007) TCGA-D3-A8GB-06 X 124029907 124029907 G A TENM1 Missense_Mutation p.S134F 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GB-06 X 134993373 134993373 C T SAGE1 Silent p.V676V 0.40 TCGA-D3-A8GB-06 X 135405133 135405133 C T GPR112 Silent p.D89D 0.33 TCGA-D3-A8GB-06 X 140996045 140996045 A T MAGEC1 Missense_Mutation p.K952I 0.35 deleterious(0) unknown(0) TCGA-D3-A8GB-06 X 142717473 142717473 G A SLITRK4 Silent p.L484L 0.35 TCGA-D3-A8GB-06 X 144337371 144337371 G A SPANXN1 3'UTR 0.23 TCGA-D3-A8GB-06 X 153041484 153041484 C T PLXNB3 Missense_Mutation p.P1538L 0.21 deleterious(0) possibly_damaging(0.61) TCGA-D3-A8GB-06 X 153595793 153595793 G A FLNA Silent p.N280N 0.33 TCGA-D3-A8GB-06 X 154003520 154003520 T C DKC1 Missense_Mutation p.V437A 0.41 tolerated_low_confidence(0.77) benign(0) TCGA-D3-A8GB-06 X 17768162 17768162 C T SCML1 Missense_Mutation p.P151L 0.28 tolerated(0.07) benign(0.005) TCGA-D3-A8GB-06 X 34962878 34962878 G A FAM47B Missense_Mutation p.E644K 0.39 tolerated(0.11) benign(0.187) TCGA-D3-A8GB-06 X 41205816 41205816 C T DDX3X Missense_Mutation p.P519L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GB-06 X 49108129 49108129 C T FOXP3 Nonsense_Mutation p.W381* 0.25 TCGA-D3-A8GB-06 X 50051733 50051733 C T CCNB3 Silent p.S188S 0.35 TCGA-D3-A8GB-06 X 52677409 52677409 G A SSX7 Missense_Mutation p.S123L 0.31 tolerated(0.49) benign(0.012) TCGA-D3-A8GB-06 X 53581671 53581671 G A HUWE1 Missense_Mutation p.P2806L 0.39 benign(0) TCGA-D3-A8GB-06 X 54817496 54817496 G A ITIH6 Silent p.F130F 0.38 TCGA-D3-A8GB-06 X 55248236 55248236 G A PAGE5 Missense_Mutation p.E60K 0.23 tolerated(0.06) possibly_damaging(0.658) TCGA-D3-A8GB-06 X 64139030 64139030 G A ZC4H2 Silent p.I151I 0.33 TCGA-D3-A8GB-06 X 69176907 69176907 G A EDA Missense_Mutation p.E143K 0.34 tolerated_low_confidence(0.06) unknown(0) TCGA-D3-A8GB-06 X 69255297 69255297 G A EDA Silent p.T338T 0.30 TCGA-D3-A8GB-06 X 69255298 69255298 G A EDA Missense_Mutation p.G339S 0.30 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-D3-A8GB-06 X 70824247 70824247 G C ACRC Missense_Mutation p.D374H 0.30 unknown(0) TCGA-D3-A8GB-06 X 73063357 73063357 C T XIST RNA 0.33 TCGA-D3-A8GB-06 X 75649100 75649100 C T MAGEE1 Silent p.S259S 0.24 TCGA-D3-A8GB-06 X 79698636 79698636 C T FAM46D Missense_Mutation p.P200S 0.41 deleterious(0.01) possibly_damaging(0.474) TCGA-D3-A8GB-06 Y 16734319 16734319 C T NLGN4Y Missense_Mutation p.S107F 0.29 deleterious(0.01) benign(0.06) TCGA-D3-A8GC-06 10 102541057 102541057 C T PAX2 Missense_Mutation p.S184F 0.15 deleterious(0) possibly_damaging(0.781) TCGA-D3-A8GC-06 10 103384526 103384526 G A FBXW4 Missense_Mutation p.P271L 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-D3-A8GC-06 10 104157392 104157392 C T NFKB2 Missense_Mutation p.S204F 0.22 deleterious(0.01) benign(0.383) TCGA-D3-A8GC-06 10 105176488 105176488 T G PDCD11 Missense_Mutation p.Y587D 0.58 deleterious(0) probably_damaging(0.93) TCGA-D3-A8GC-06 10 11505682 11505682 G A USP6NL Silent p.S432S 0.40 TCGA-D3-A8GC-06 10 118385472 118385472 G A PNLIPRP2 Missense_Mutation p.E74K 0.71 tolerated(0.11) benign(0.003) TCGA-D3-A8GC-06 10 129871687 129871687 G A PTPRE Nonsense_Mutation p.W517* 0.81 TCGA-D3-A8GC-06 10 129901645 129901645 G A MKI67 Missense_Mutation p.T2820I 0.67 tolerated(0.22) benign(0.15) TCGA-D3-A8GC-06 10 133058629 133058629 G A TCERG1L Missense_Mutation p.S250F 0.38 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GC-06 10 135126333 135126333 G A ZNF511 Missense_Mutation p.G241E 0.23 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GC-06 10 14950590 14950590 C T DCLRE1C Silent p.E632E 0.53 TCGA-D3-A8GC-06 10 17195452 17195452 G A TRDMT1 Intron 0.30 TCGA-D3-A8GC-06 10 22002737 22002737 C T MLLT10 Missense_Mutation p.P579L 0.49 tolerated(0.19) possibly_damaging(0.662) TCGA-D3-A8GC-06 10 25312378 25312378 G A THNSL1 Missense_Mutation p.G76S 0.33 tolerated(0.1) possibly_damaging(0.502) TCGA-D3-A8GC-06 10 26285470 26285470 G A MYO3A Missense_Mutation p.G119S 0.18 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GC-06 10 26432478 26432478 C T MYO3A Silent p.S788S 0.56 TCGA-D3-A8GC-06 10 26800678 26800678 C T APBB1IP Silent p.L178L 0.31 TCGA-D3-A8GC-06 10 28358748 28358748 C T MPP7 Missense_Mutation p.R386Q 0.62 tolerated(0.5) possibly_damaging(0.877) TCGA-D3-A8GC-06 10 30653966 30653966 C T AL161651.1 3'Flank 0.25 TCGA-D3-A8GC-06 10 30915191 30915191 C T LYZL2 Nonsense_Mutation p.W93* 0.30 TCGA-D3-A8GC-06 10 37430993 37430993 G T ANKRD30A Missense_Mutation p.D334Y 0.50 tolerated(0.3) benign(0.432) TCGA-D3-A8GC-06 10 37455614 37455614 A T ANKRD30A Nonsense_Mutation p.K660* 0.64 TCGA-D3-A8GC-06 10 45941007 45941007 G A ALOX5 Missense_Mutation p.E633K 0.24 tolerated(0.32) benign(0.063) TCGA-D3-A8GC-06 10 48370893 48370893 G A ZNF488 Missense_Mutation p.E121K 0.64 tolerated(0.16) benign(0.099) TCGA-D3-A8GC-06 10 48388371 48388371 G A RBP3 Missense_Mutation p.S836L 0.44 tolerated(0.07) benign(0) TCGA-D3-A8GC-06 10 49431293 49431293 C T FRMPD2 Missense_Mutation p.D397N 0.32 deleterious(0.03) benign(0.358) TCGA-D3-A8GC-06 10 49457075 49457075 C T FRMPD2 Missense_Mutation p.D100N 0.45 tolerated(0.56) benign(0.03) TCGA-D3-A8GC-06 10 50594820 50594820 C T DRGX Missense_Mutation p.A112T 0.60 tolerated(0.21) benign(0.001) TCGA-D3-A8GC-06 10 52595957 52595957 C T A1CF Missense_Mutation p.E169K 0.63 deleterious(0) benign(0.408) TCGA-D3-A8GC-06 10 5567333 5567333 G A CALML3 Silent p.K95K 0.54 TCGA-D3-A8GC-06 10 61819654 61819654 G A ANK3 Intron 0.16 TCGA-D3-A8GC-06 10 61831457 61831457 G A ANK3 Missense_Mutation p.P3061L 0.21 probably_damaging(0.994) TCGA-D3-A8GC-06 10 61835494 61835494 T A ANK3 Missense_Mutation p.L1715F 0.22 benign(0.346) TCGA-D3-A8GC-06 10 61965608 61965608 C T ANK3 Missense_Mutation p.R412Q 0.66 probably_damaging(0.998) TCGA-D3-A8GC-06 10 62023697 62023697 C A ANK3 Nonsense_Mutation p.G199* 0.12 TCGA-D3-A8GC-06 10 64565561 64565561 C T ADO Silent p.L248L 0.50 TCGA-D3-A8GC-06 10 6506328 6506328 C T PRKCQ Silent p.G464G 0.62 TCGA-D3-A8GC-06 10 70949063 70949063 C T SUPV3L1 Missense_Mutation p.H205Y 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 10 71176080 71176080 G A TACR2 5'UTR 0.56 TCGA-D3-A8GC-06 10 74684026 74684026 G A OIT3 Missense_Mutation p.G331S 0.15 tolerated(0.32) probably_damaging(0.992) TCGA-D3-A8GC-06 10 75394299 75394299 C T MYOZ1 Missense_Mutation p.G149S 0.15 tolerated(0.36) benign(0.001) TCGA-D3-A8GC-06 10 75673838 75673838 C T PLAU Silent p.L261L 0.38 TCGA-D3-A8GC-06 10 7608315 7608315 C T ITIH5 Silent p.K735K 0.44 TCGA-D3-A8GC-06 10 7618614 7618614 C T ITIH5 Missense_Mutation p.D594N 0.54 tolerated(0.21) benign(0.008) TCGA-D3-A8GC-06 10 81700507 81700507 C T SFTPD Silent p.Q235Q 0.24 TCGA-D3-A8GC-06 10 84118610 84118610 C T NRG3 Silent p.S313S 0.60 TCGA-D3-A8GC-06 10 84118611 84118611 C T NRG3 Missense_Mutation p.H314Y 0.61 deleterious(0.04) possibly_damaging(0.805) TCGA-D3-A8GC-06 10 85968542 85968542 G A CDHR1 Missense_Mutation p.V409I 0.71 tolerated(0.07) probably_damaging(0.965) TCGA-D3-A8GC-06 10 85981817 85981817 C T LRIT2 Silent p.R504R 0.48 TCGA-D3-A8GC-06 10 91143855 91143855 G A IFIT1B Missense_Mutation p.R262Q 0.16 deleterious(0.03) benign(0.298) TCGA-D3-A8GC-06 10 95159223 95159223 C G MYOF Missense_Mutation p.E383Q 0.08 tolerated(1) benign(0.199) TCGA-D3-A8GC-06 10 96014724 96014724 C T PLCE1 Missense_Mutation p.P1158S 0.63 tolerated(0.2) benign(0.009) TCGA-D3-A8GC-06 10 96802760 96802760 G A CYP2C8 Missense_Mutation p.P346S 0.54 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GC-06 10 96805651 96805651 C T CYP2C8 Missense_Mutation p.D293N 0.17 tolerated(0.23) possibly_damaging(0.475) TCGA-D3-A8GC-06 10 98803188 98803188 C T SLIT1 Missense_Mutation p.D646N 0.62 deleterious(0.02) probably_damaging(0.965) TCGA-D3-A8GC-06 11 102824977 102824977 G A MMP13 Missense_Mutation p.S182F 0.73 deleterious(0.01) possibly_damaging(0.745) TCGA-D3-A8GC-06 11 1093856 1093856 C T MUC2 Missense_Mutation p.S1892F 0.82 unknown(0) TCGA-D3-A8GC-06 11 1158066 1158066 C T MUC5AC Missense_Mutation p.S349F 0.93 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GC-06 11 117988097 117988097 C T TMPRSS4 Silent p.C410C 0.77 TCGA-D3-A8GC-06 11 119045626 119045626 C T NLRX1 Silent p.S438S 0.74 TCGA-D3-A8GC-06 11 121485707 121485707 G A SORL1 Silent p.K1849K 0.73 TCGA-D3-A8GC-06 11 121485708 121485708 G A SORL1 Missense_Mutation p.A1850T 0.73 deleterious(0.01) benign(0.317) TCGA-D3-A8GC-06 11 122805641 122805641 G T C11orf63 Nonsense_Mutation p.E498* 0.89 TCGA-D3-A8GC-06 11 123480999 123480999 C T GRAMD1B Silent p.I481I 0.77 TCGA-D3-A8GC-06 11 125648630 125648630 G A PATE2 Silent p.L13L 0.79 TCGA-D3-A8GC-06 11 128781223 128781223 C T KCNJ5 Missense_Mutation p.P19S 0.79 tolerated(0.52) benign(0.001) TCGA-D3-A8GC-06 11 130785717 130785717 G A SNX19 Silent p.L40L 0.85 TCGA-D3-A8GC-06 11 130785718 130785718 G A SNX19 Silent p.L39L 0.86 TCGA-D3-A8GC-06 11 17452386 17452386 G A ABCC8 Nonsense_Mutation p.R598* 0.80 TCGA-D3-A8GC-06 11 19247302 19247302 C T E2F8 Missense_Mutation p.R668K 0.88 tolerated(1) benign(0.002) TCGA-D3-A8GC-06 11 19256501 19256501 G A E2F8 Missense_Mutation p.L186F 0.77 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 11 26702622 26702622 C T SLC5A12 Silent p.G485G 0.84 TCGA-D3-A8GC-06 11 3249991 3249991 G A MRGPRE Silent p.A12A 0.86 TCGA-D3-A8GC-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.74 TCGA-D3-A8GC-06 11 4967979 4967979 G A OR51A4 Silent p.L118L 0.39 TCGA-D3-A8GC-06 11 50003445 50003445 G A OR4C12 Missense_Mutation p.A198V 0.83 tolerated_low_confidence(0.31) benign(0.143) TCGA-D3-A8GC-06 11 5067800 5067800 C T OR52J3 Silent p.F15F 0.85 TCGA-D3-A8GC-06 11 5410697 5410697 A T OR51M1 Silent p.I23I 0.76 TCGA-D3-A8GC-06 11 55135703 55135703 C T OR4A15 Missense_Mutation p.S115F 0.78 tolerated_low_confidence(0.65) benign(0.04) TCGA-D3-A8GC-06 11 55136025 55136025 C T OR4A15 Silent p.V222V 0.83 TCGA-D3-A8GC-06 11 55322811 55322811 G A OR4C15 Silent p.R343R 0.76 TCGA-D3-A8GC-06 11 56310494 56310494 C T OR5M11 Silent p.Q80Q 0.88 TCGA-D3-A8GC-06 11 57252650 57252650 G A SLC43A1 Silent p.Y533Y 0.62 TCGA-D3-A8GC-06 11 58660235 58660235 C T GLYATL1P2 RNA 0.70 TCGA-D3-A8GC-06 11 58892540 58892549 ATTCTCCCAC - FAM111B Frame_Shift_Del p.I324Lfs*4 0.86 TCGA-D3-A8GC-06 11 59271977 59271977 G A OR4D11 Missense_Mutation p.R310K 0.63 tolerated(0.88) benign(0.001) TCGA-D3-A8GC-06 11 61257418 61257418 G A PPP1R32 Missense_Mutation p.R403K 0.79 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 11 62289002 62289002 G A AHNAK Missense_Mutation p.P4296L 0.79 probably_damaging(0.999) TCGA-D3-A8GC-06 11 6415621 6415621 T C SMPD1 Silent p.Y560Y 0.08 TCGA-D3-A8GC-06 11 64519475 64519475 G A PYGM Silent p.L563L 0.77 TCGA-D3-A8GC-06 11 64851119 64851119 G A CDCA5 Silent p.L41L 0.88 TCGA-D3-A8GC-06 11 73022367 73022367 C T ARHGEF17 Missense_Mutation p.P895L 0.76 tolerated_low_confidence(0.25) benign(0.006) TCGA-D3-A8GC-06 11 76944090 76944090 C T GDPD4 Missense_Mutation p.D457N 0.96 tolerated(1) benign(0) TCGA-D3-A8GC-06 11 7981217 7981217 C T NLRP10 Missense_Mutation p.E648K 0.81 tolerated(0.23) benign(0.011) TCGA-D3-A8GC-06 11 7981942 7981942 C T NLRP10 Missense_Mutation p.R406Q 0.79 tolerated(0.49) benign(0.011) TCGA-D3-A8GC-06 11 92715023 92715023 C T MTNR1B Missense_Mutation p.P212S 0.77 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 11 99941215 99941215 C T CNTN5 Nonsense_Mutation p.R408* 0.89 TCGA-D3-A8GC-06 12 103984745 103984745 G A STAB2 Missense_Mutation p.G51E 0.84 tolerated(1) benign(0.001) TCGA-D3-A8GC-06 12 106466555 106466555 G A NUAK1 Missense_Mutation p.P216S 0.87 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 12 10954297 10954297 T G TAS2R7 Missense_Mutation p.K291N 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 12 109677782 109677782 C T ACACB Missense_Mutation p.P1604S 0.84 deleterious(0.03) probably_damaging(0.962) TCGA-D3-A8GC-06 12 111085074 111085074 C T TCTN1 Missense_Mutation p.S523F 0.84 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 12 112681443 112681443 C T HECTD4 Missense_Mutation p.G1445D 0.38 probably_damaging(0.976) TCGA-D3-A8GC-06 12 113754436 113754436 G A SLC8B1 Silent p.F296F 0.72 TCGA-D3-A8GC-06 12 11461475 11461475 C T PRB4 Missense_Mutation p.G148R 0.38 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GC-06 12 11506138 11506138 C T PRB1 Missense_Mutation p.G167E 0.39 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GC-06 12 11546479 11546479 C T PRB2 Missense_Mutation p.G178E 0.42 tolerated_low_confidence(0.34) unknown(0) TCGA-D3-A8GC-06 12 117718570 117718570 C T NOS1 Missense_Mutation p.G495D 0.85 deleterious(0.01) possibly_damaging(0.861) TCGA-D3-A8GC-06 12 12284814 12284814 G A LRP6 Missense_Mutation p.A1304V 0.46 tolerated(0.29) benign(0.008) TCGA-D3-A8GC-06 12 123879680 123879680 C T SETD8 Missense_Mutation p.P126S 0.88 tolerated(0.61) benign(0.015) TCGA-D3-A8GC-06 12 124403267 124403267 C T DNAH10 Silent p.I3641I 0.75 TCGA-D3-A8GC-06 12 12674027 12674027 G A DUSP16 Silent p.A2A 0.40 TCGA-D3-A8GC-06 12 132416843 132416843 G A PUS1 Missense_Mutation p.A143T 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 12 14578331 14578331 C T ATF7IP Silent p.V494V 0.44 TCGA-D3-A8GC-06 12 18891674 18891674 C T CAPZA3 Missense_Mutation p.H158Y 0.37 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GC-06 12 20523154 20523154 C T PDE3A Silent p.S312S 0.37 TCGA-D3-A8GC-06 12 21242928 21242928 C T SLCO1B7 Missense_Mutation p.S604F 0.39 tolerated(0.49) benign(0.001) TCGA-D3-A8GC-06 12 21331521 21331521 G A SLCO1B1 Missense_Mutation p.E165K 0.44 deleterious(0.02) benign(0.344) TCGA-D3-A8GC-06 12 21690049 21690049 C T GYS2 Missense_Mutation p.A651T 0.42 tolerated(0.72) benign(0.004) TCGA-D3-A8GC-06 12 2937201 2937201 C T NRIP2 Silent p.R197R 0.35 TCGA-D3-A8GC-06 12 2983540 2983540 G A FOXM1 Silent p.S35S 0.39 TCGA-D3-A8GC-06 12 32136192 32136192 T C KIAA1551 Missense_Mutation p.L768P 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 12 32974436 32974436 C T PKP2 Missense_Mutation p.E667K 0.50 deleterious(0) possibly_damaging(0.831) TCGA-D3-A8GC-06 12 38712195 38712195 C T ALG10B Missense_Mutation p.L102F 0.75 deleterious(0.01) possibly_damaging(0.893) TCGA-D3-A8GC-06 12 4735736 4735736 G A AKAP3 Nonsense_Mutation p.Q778* 0.34 TCGA-D3-A8GC-06 12 48391659 48391659 C T COL2A1 Missense_Mutation p.E142K 0.82 unknown(0) TCGA-D3-A8GC-06 12 4853770 4853770 G A GALNT8 Missense_Mutation p.R255K 0.40 deleterious(0.03) benign(0.39) TCGA-D3-A8GC-06 12 49228236 49228236 G A DDX23 Missense_Mutation p.P476L 0.80 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 12 52757116 52757116 C T KRT85 Missense_Mutation p.D289N 0.79 deleterious(0.05) benign(0.017) TCGA-D3-A8GC-06 12 52844256 52844256 C T KRT6B Missense_Mutation p.G230E 0.17 deleterious(0.02) benign(0.135) TCGA-D3-A8GC-06 12 52912796 52912796 C T KRT5 Missense_Mutation p.G235E 0.07 deleterious(0.02) benign(0.188) TCGA-D3-A8GC-06 12 53165892 53165892 G A KRT76 Silent p.L375L 0.77 TCGA-D3-A8GC-06 12 55421356 55421356 C T NEUROD4 3'UTR 0.93 TCGA-D3-A8GC-06 12 55714722 55714722 G A OR6C1 Silent p.L113L 0.77 TCGA-D3-A8GC-06 12 57578756 57578756 C T LRP1 Silent p.F2107F 0.83 TCGA-D3-A8GC-06 12 6438950 6438950 G A TNFRSF1A Silent p.L351L 0.25 TCGA-D3-A8GC-06 12 6463990 6463990 C T SCNN1A Missense_Mutation p.D449N 0.43 tolerated(1) benign(0.005) TCGA-D3-A8GC-06 12 6711174 6711174 G A CHD4 Silent p.S130S 0.39 TCGA-D3-A8GC-06 12 6711175 6711175 G A CHD4 Missense_Mutation p.S130F 0.35 deleterious_low_confidence(0.02) benign(0.013) TCGA-D3-A8GC-06 12 69115744 69115744 C T NUP107 Missense_Mutation p.P479S 0.87 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 12 6969597 6969597 C T USP5 Missense_Mutation p.S429F 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GC-06 12 70794080 70794080 C T KCNMB4 Missense_Mutation p.S143F 0.83 tolerated(0.11) benign(0.018) TCGA-D3-A8GC-06 12 73046183 73046183 G A TRHDE Missense_Mutation p.M874I 0.78 tolerated(0.18) possibly_damaging(0.609) TCGA-D3-A8GC-06 12 79693164 79693164 G A SYT1 Missense_Mutation p.V215I 0.72 tolerated(0.26) benign(0.053) TCGA-D3-A8GC-06 12 8329772 8329772 C T ZNF705A Missense_Mutation p.H166Y 0.46 tolerated(0.1) benign(0.291) TCGA-D3-A8GC-06 13 100622387 100622387 G A ZIC5 Missense_Mutation p.H515Y 0.29 deleterious(0) benign(0.315) TCGA-D3-A8GC-06 13 108861319 108861319 G A LIG4 Silent p.F766F 0.45 TCGA-D3-A8GC-06 13 111368050 111368050 C T ING1 Missense_Mutation p.S87F 0.50 deleterious_low_confidence(0.03) benign(0) TCGA-D3-A8GC-06 13 25376610 25376610 G A RNF17 Missense_Mutation p.G617D 0.39 tolerated(0.14) probably_damaging(0.992) TCGA-D3-A8GC-06 13 26620824 26620824 G A SHISA2 Nonsense_Mutation p.Q239* 0.51 TCGA-D3-A8GC-06 13 27333433 27333433 C T GPR12 Missense_Mutation p.G178S 0.30 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GC-06 13 31712974 31712974 C T HSPH1 Missense_Mutation p.E718K 0.50 deleterious(0.01) benign(0.16) TCGA-D3-A8GC-06 13 33018077 33018077 G A N4BP2L2 Silent p.T199T 0.32 TCGA-D3-A8GC-06 13 33739512 33739512 A C STARD13 Missense_Mutation p.H95Q 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 13 43358274 43358274 C T FAM216B Missense_Mutation p.P24L 0.37 tolerated(0.11) benign(0.004) TCGA-D3-A8GC-06 13 46287376 46287382 GCAGCAG AA SPERT Frame_Shift_Del p.Q73Sfs*64 0.40 TCGA-D3-A8GC-06 13 53603031 53603031 G A OLFM4 Silent p.G20G 0.51 TCGA-D3-A8GC-06 13 53603032 53603032 G A OLFM4 Missense_Mutation p.D21N 0.51 tolerated_low_confidence(0.76) unknown(0) TCGA-D3-A8GC-06 13 77655570 77655570 C T MYCBP2 Missense_Mutation p.D3766N 0.39 probably_damaging(0.987) TCGA-D3-A8GC-06 13 77817950 77817950 G A MYCBP2 Missense_Mutation p.L802F 0.22 probably_damaging(0.948) TCGA-D3-A8GC-06 13 78167670 78167670 C T SCEL Silent p.I238I 0.32 TCGA-D3-A8GC-06 13 93518683 93518683 G A GPC5 Silent p.G570G 0.31 TCGA-D3-A8GC-06 13 94197568 94197568 G A GPC6 Missense_Mutation p.M71I 0.46 deleterious(0) possibly_damaging(0.734) TCGA-D3-A8GC-06 14 100801322 100801322 C T WARS Missense_Mutation p.E436K 0.80 tolerated(0.34) benign(0.031) TCGA-D3-A8GC-06 14 101493156 101493156 C T MIR329-1 RNA 0.78 TCGA-D3-A8GC-06 14 101526154 101526154 T C MIR154 RNA 0.76 TCGA-D3-A8GC-06 14 105243006 105243006 G A AKT1 Missense_Mutation p.P93S 0.76 tolerated(0.29) benign(0.084) TCGA-D3-A8GC-06 14 105412894 105412894 G A AHNAK2 Missense_Mutation p.S2965F 0.78 possibly_damaging(0.648) TCGA-D3-A8GC-06 14 106111097 106111097 G A IGHG2 Silent p.L11L 0.34 TCGA-D3-A8GC-06 14 106725386 106725386 C T IGHV3-23 Missense_Mutation p.V56I 0.40 tolerated_low_confidence(0.15) benign(0.046) TCGA-D3-A8GC-06 14 106733313 106733313 C T IGHV1-24 Missense_Mutation p.G61E 0.78 tolerated(0.07) possibly_damaging(0.731) TCGA-D3-A8GC-06 14 107048912 107048912 G A IGHV3-53 Silent p.S36S 0.55 TCGA-D3-A8GC-06 14 107114004 107114004 A G IGHV3-64 Silent p.L31L 0.75 TCGA-D3-A8GC-06 14 20863771 20863771 G A TEP1 Missense_Mutation p.S589L 0.85 deleterious(0.03) benign(0.299) TCGA-D3-A8GC-06 14 21794020 21794020 G A RPGRIP1 Missense_Mutation p.E800K 0.86 deleterious(0.02) possibly_damaging(0.896) TCGA-D3-A8GC-06 14 22409720 22409720 G A TRAV9-2 Silent p.T70T 0.85 TCGA-D3-A8GC-06 14 22573961 22573961 G A TRAV24 Missense_Mutation p.E61K 0.90 tolerated(0.17) benign(0.058) TCGA-D3-A8GC-06 14 22966702 22966702 C T TRAJ41 Silent p.P21P 0.65 TCGA-D3-A8GC-06 14 24045213 24045213 C T JPH4 Missense_Mutation p.A278T 0.73 tolerated(1) benign(0.258) TCGA-D3-A8GC-06 14 24884094 24884094 C T NYNRIN Missense_Mutation p.P1047S 0.74 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-D3-A8GC-06 14 31355137 31355137 G C COCH Missense_Mutation p.V366L 0.79 tolerated(0.08) probably_damaging(0.991) TCGA-D3-A8GC-06 14 57947445 57947445 G A C14orf105 Missense_Mutation p.H175Y 0.83 deleterious(0) possibly_damaging(0.862) TCGA-D3-A8GC-06 14 58030953 58030953 T A SLC35F4 Missense_Mutation p.E489V 0.87 tolerated(0.31) possibly_damaging(0.802) TCGA-D3-A8GC-06 14 59112720 59112720 C T DACT1 Missense_Mutation p.S460L 0.74 tolerated(0.06) benign(0.022) TCGA-D3-A8GC-06 14 60194302 60194302 G A RTN1 Missense_Mutation p.S367L 0.93 deleterious(0) benign(0.049) TCGA-D3-A8GC-06 14 61180337 61180337 G A SIX4 Missense_Mutation p.R712C 0.69 deleterious_low_confidence(0) benign(0.306) TCGA-D3-A8GC-06 14 65240133 65240133 G A SPTB Silent p.I1661I 0.82 TCGA-D3-A8GC-06 14 70490049 70490049 G A SMOC1 Silent p.K392K 0.81 TCGA-D3-A8GC-06 14 91655354 91655354 C T C14orf159 Silent p.P345P 0.72 TCGA-D3-A8GC-06 14 93172963 93172963 G A LGMN Silent p.I352I 0.81 TCGA-D3-A8GC-06 14 94048677 94048677 C T UNC79 Silent p.P753P 0.70 TCGA-D3-A8GC-06 14 94754856 94754856 G A SERPINA10 Silent p.V253V 0.71 TCGA-D3-A8GC-06 14 96730457 96730457 G A BDKRB1 Silent p.R146R 0.84 TCGA-D3-A8GC-06 15 100942994 100942994 C T CERS3 Missense_Mutation p.G359D 1.00 tolerated(0.41) benign(0.001) TCGA-D3-A8GC-06 15 101098935 101098935 G A RNU6-181P 3'Flank 0.88 TCGA-D3-A8GC-06 15 23262329 23262329 G A GOLGA8I Missense_Mutation p.E396K 0.65 deleterious(0.04) probably_damaging(0.987) TCGA-D3-A8GC-06 15 42371950 42371950 C T PLA2G4D Missense_Mutation p.A368T 0.82 tolerated(0.14) benign(0.407) TCGA-D3-A8GC-06 15 43678040 43678040 C T TUBGCP4 Silent p.L259L 0.84 TCGA-D3-A8GC-06 15 45396456 45396456 G A DUOX2 Silent p.S814S 0.83 TCGA-D3-A8GC-06 15 54307600 54307600 C T UNC13C Missense_Mutation p.R834W 0.89 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 15 62170919 62170919 G A VPS13C Silent p.S3343S 0.82 TCGA-D3-A8GC-06 15 64966551 64966551 C T ZNF609 Missense_Mutation p.P500S 0.87 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 15 72874481 72874481 C T ARIH1 Silent p.S514S 0.66 TCGA-D3-A8GC-06 15 74636208 74636208 G A CYP11A1 Missense_Mutation p.P251S 0.81 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 15 77020984 77020984 C T SCAPER Missense_Mutation p.R706K 0.81 tolerated(0.33) possibly_damaging(0.832) TCGA-D3-A8GC-06 15 85341910 85341910 C T ZNF592 Missense_Mutation p.P943L 0.91 deleterious(0.05) possibly_damaging(0.502) TCGA-D3-A8GC-06 15 88420309 88420309 G A NTRK3 Nonsense_Mutation p.R793* 0.60 TCGA-D3-A8GC-06 15 97327408 97327408 G A SPATA8 Missense_Mutation p.A39T 0.84 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-D3-A8GC-06 16 1033862 1033862 C T SOX8 Missense_Mutation p.S186F 0.44 deleterious(0) possibly_damaging(0.729) TCGA-D3-A8GC-06 16 11369827 11369827 C T PRM2 Intron 0.53 TCGA-D3-A8GC-06 16 14341243 14341243 C A MKL2 Intron 0.40 TCGA-D3-A8GC-06 16 15166834 15166834 G A RRN3 Silent p.F367F 0.27 TCGA-D3-A8GC-06 16 1712516 1712516 C T CRAMP1L Silent p.L813L 0.36 TCGA-D3-A8GC-06 16 19474602 19474602 G A TMC5 Silent p.R383R 0.48 TCGA-D3-A8GC-06 16 20476961 20476961 C T ACSM2A Silent p.A100A 0.11 TCGA-D3-A8GC-06 16 20554512 20554512 C T ACSM2B Missense_Mutation p.E452K 0.22 tolerated(0.15) benign(0.005) TCGA-D3-A8GC-06 16 20570647 20570647 G A ACSM2B Silent p.A100A 0.53 TCGA-D3-A8GC-06 16 20808208 20808208 G A ACSM3 Missense_Mutation p.V559I 0.38 tolerated(0.62) benign(0.024) TCGA-D3-A8GC-06 16 20814941 20814941 G A ERI2 Silent p.L25L 0.66 TCGA-D3-A8GC-06 16 20975038 20975038 C G DNAH3 Missense_Mutation p.E3390Q 0.50 tolerated(0.24) possibly_damaging(0.623) TCGA-D3-A8GC-06 16 20975549 20975549 C T DNAH3 Silent p.E3219E 0.38 TCGA-D3-A8GC-06 16 20997024 20997024 A G DNAH3 Missense_Mutation p.L2347S 0.38 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GC-06 16 21328340 21328340 C T CRYM-AS1 RNA 0.40 TCGA-D3-A8GC-06 16 21742161 21742161 C T OTOA Silent p.L737L 0.31 TCGA-D3-A8GC-06 16 22153002 22153002 G A VWA3A Missense_Mutation p.G828E 0.50 deleterious(0.02) possibly_damaging(0.796) TCGA-D3-A8GC-06 16 22153003 22153003 G A VWA3A Silent p.G828G 0.50 TCGA-D3-A8GC-06 16 22926475 22926475 C T HS3ST2 Silent p.S232S 0.43 TCGA-D3-A8GC-06 16 2334395 2334395 G A ABCA3 Silent p.F1249F 0.47 TCGA-D3-A8GC-06 16 23403792 23403792 G A COG7 Silent p.I685I 0.45 TCGA-D3-A8GC-06 16 2354062 2354062 C T ABCA3 Missense_Mutation p.D459N 0.36 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 16 24166157 24166157 C T PRKCB Silent p.L406L 0.39 TCGA-D3-A8GC-06 16 24226024 24226024 C T PRKCB Missense_Mutation p.P637S 0.39 tolerated(0.31) benign(0.01) TCGA-D3-A8GC-06 16 24582454 24582454 C T RBBP6 Missense_Mutation p.P1356L 0.51 tolerated_low_confidence(0.08) unknown(0) TCGA-D3-A8GC-06 16 27840268 27840268 C T GSG1L Nonsense_Mutation p.W224* 0.25 TCGA-D3-A8GC-06 16 28846466 28846466 C T ATXN2L Nonsense_Mutation p.Q841* 0.43 TCGA-D3-A8GC-06 16 29979368 29979368 C T TMEM219 Silent p.V126V 0.36 TCGA-D3-A8GC-06 16 31371260 31371260 C T ITGAX Missense_Mutation p.S194F 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 16 3140453 3140453 C T ZSCAN10 Missense_Mutation p.E273K 0.43 tolerated(0.13) benign(0.204) TCGA-D3-A8GC-06 16 3614579 3614579 C T NLRC3 Missense_Mutation p.R167K 0.47 tolerated(0.7) benign(0.003) TCGA-D3-A8GC-06 16 4308039 4308039 G A TFAP4 3'UTR 0.53 TCGA-D3-A8GC-06 16 4487464 4487464 C T DNAJA3 Missense_Mutation p.S136F 0.31 deleterious(0.03) possibly_damaging(0.797) TCGA-D3-A8GC-06 16 50666288 50666288 G A NKD1 Silent p.G264G 0.79 TCGA-D3-A8GC-06 16 53653108 53653108 T - RPGRIP1L Frame_Shift_Del p.I1149Ffs*6 0.48 TCGA-D3-A8GC-06 16 57063740 57063740 C T NLRC5 Missense_Mutation p.P767S 0.76 tolerated(0.6) benign(0.004) TCGA-D3-A8GC-06 16 57110749 57110749 C T NLRC5 Silent p.I1590I 0.92 TCGA-D3-A8GC-06 16 58559117 58559117 G A CNOT1 Silent p.I2250I 0.33 TCGA-D3-A8GC-06 16 599800 599800 C A CAPN15 Missense_Mutation p.D676E 0.53 deleterious(0) possibly_damaging(0.877) TCGA-D3-A8GC-06 16 599801 599801 C T CAPN15 Missense_Mutation p.L677F 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 16 614982 614982 C T C16orf11 Missense_Mutation p.P464L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 16 68308629 68308629 C T SLC7A6 5'UTR 0.60 TCGA-D3-A8GC-06 16 68308896 68308896 C T SLC7A6 Silent p.L89L 0.45 TCGA-D3-A8GC-06 16 68308947 68308947 C T SLC7A6 Silent p.T106T 0.49 TCGA-D3-A8GC-06 16 68309007 68309007 C T SLC7A6 Silent p.I126I 0.45 TCGA-D3-A8GC-06 16 68309110 68309110 C T SLC7A6 Missense_Mutation p.P161S 0.32 tolerated(0.06) benign(0.219) TCGA-D3-A8GC-06 16 75149467 75149467 C T LDHD Missense_Mutation p.G55E 0.58 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GC-06 16 75149468 75149468 C T LDHD Missense_Mutation p.G55R 0.56 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GC-06 16 76569483 76569483 C T CNTNAP4 Missense_Mutation p.R860W 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 16 76572040 76572040 C T CNTNAP4 Missense_Mutation p.S935L 0.30 deleterious(0) possibly_damaging(0.721) TCGA-D3-A8GC-06 16 80646603 80646603 G A CDYL2 Nonsense_Mutation p.Q380* 0.58 TCGA-D3-A8GC-06 16 83636170 83636170 G A CDH13 Missense_Mutation p.D405N 0.80 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 16 8862758 8862758 C T ABAT Silent p.F248F 0.41 TCGA-D3-A8GC-06 16 9916259 9916259 G A GRIN2A Missense_Mutation p.S677F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GC-06 17 1028599 1028599 G A ABR Silent p.T55T 0.86 TCGA-D3-A8GC-06 17 10312442 10312442 G A MYH8 Missense_Mutation p.S646F 0.73 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GC-06 17 10419293 10419293 G A MYH1 Missense_Mutation p.P152L 0.78 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 17 1183640 1183640 C T TUSC5 Silent p.P115P 0.77 TCGA-D3-A8GC-06 17 25928922 25928922 C T KSR1 Missense_Mutation p.P368L 0.36 tolerated(0.15) benign(0.002) TCGA-D3-A8GC-06 17 263344 263344 C T C17orf97 Missense_Mutation p.P237L 0.94 tolerated_low_confidence(0.08) benign(0.008) TCGA-D3-A8GC-06 17 27001365 27001365 C T SUPT6H Silent p.I58I 0.52 TCGA-D3-A8GC-06 17 28383119 28383119 C T EFCAB5 Silent p.V770V 0.26 TCGA-D3-A8GC-06 17 29119581 29119581 G A CRLF3 Missense_Mutation p.A279V 0.44 tolerated(0.12) benign(0.033) TCGA-D3-A8GC-06 17 29654798 29654798 C T NF1 Silent p.V1850V 0.43 TCGA-D3-A8GC-06 17 2966303 2966303 A C OR1D5 Missense_Mutation p.I200S 0.23 tolerated(0.08) benign(0.031) TCGA-D3-A8GC-06 17 30677131 30677131 C T ZNF207 5'Flank 0.44 TCGA-D3-A8GC-06 17 33738605 33738605 T C SLFN12 Missense_Mutation p.I497V 0.40 tolerated(1) benign(0.01) TCGA-D3-A8GC-06 17 34073408 34073408 G A GAS2L2 Missense_Mutation p.P370S 0.47 tolerated(0.12) benign(0.028) TCGA-D3-A8GC-06 17 34942320 34942320 G T GGNBP2 Nonsense_Mutation p.E473* 0.43 TCGA-D3-A8GC-06 17 3595190 3595190 G A P2RX5 Intron 0.83 TCGA-D3-A8GC-06 17 36499223 36499223 G A GPR179 Silent p.T150T 0.45 TCGA-D3-A8GC-06 17 3657085 3657085 C T ITGAE Missense_Mutation p.G507R 0.88 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GC-06 17 37187615 37187615 G A CTD-2206N4.2 5'Flank 0.43 TCGA-D3-A8GC-06 17 37873758 37873758 G A ERBB2 Intron 0.43 TCGA-D3-A8GC-06 17 37900320 37900320 C T GRB7 Intron 0.44 TCGA-D3-A8GC-06 17 38922736 38922736 C T KRT26 3'UTR 0.44 TCGA-D3-A8GC-06 17 39471772 39471772 C T KRTAP17-1 Missense_Mutation p.G44E 0.38 unknown(0) TCGA-D3-A8GC-06 17 39580466 39580466 C T KRT37 Missense_Mutation p.E104K 0.32 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GC-06 17 39845224 39845224 C T EIF1 5'UTR 0.45 TCGA-D3-A8GC-06 17 40091573 40091573 C T TTC25 RNA 0.42 TCGA-D3-A8GC-06 17 41370020 41370020 C T TMEM106A 3'UTR 0.64 TCGA-D3-A8GC-06 17 42092417 42092417 C T TMEM101 5'UTR 0.20 TCGA-D3-A8GC-06 17 42170530 42170530 G A HDAC5 Missense_Mutation p.L192F 0.28 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GC-06 17 45099261 45099261 G A RP11-156P1.3 Intron 0.43 TCGA-D3-A8GC-06 17 45456553 45456553 G A EFCAB13 Missense_Mutation p.G506R 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GC-06 17 45492237 45492237 G A EFCAB13 Missense_Mutation p.D816N 0.38 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GC-06 17 45507225 45507225 G A EFCAB13 Missense_Mutation p.D846N 0.38 tolerated(0.1) benign(0.33) TCGA-D3-A8GC-06 17 47696634 47696634 G A SPOP Missense_Mutation p.S105F 0.43 tolerated(1) probably_damaging(1) TCGA-D3-A8GC-06 17 48148858 48148858 C T ITGA3 Missense_Mutation p.A312V 0.45 tolerated(0.07) probably_damaging(0.996) TCGA-D3-A8GC-06 17 53848499 53848499 G T PCTP Missense_Mutation p.V98L 0.35 tolerated(0.18) benign(0.031) TCGA-D3-A8GC-06 17 5462253 5462253 G T NLRP1 Missense_Mutation p.P588Q 0.78 tolerated(0.57) benign(0.004) TCGA-D3-A8GC-06 17 56232787 56232787 G A OR4D1 Silent p.T91T 0.45 TCGA-D3-A8GC-06 17 56572543 56572543 G A MTMR4 Missense_Mutation p.P987L 0.48 tolerated(0.75) benign(0.002) TCGA-D3-A8GC-06 17 59445799 59445799 G A BCAS3 Missense_Mutation p.R861Q 0.52 tolerated(0.07) possibly_damaging(0.462) TCGA-D3-A8GC-06 17 60464701 60464701 G A EFCAB3 Silent p.R77R 0.30 TCGA-D3-A8GC-06 17 62854911 62854911 G A LRRC37A3 Missense_Mutation p.L1599F 0.39 tolerated(1) benign(0.002) TCGA-D3-A8GC-06 17 64216839 64216839 G A APOH Missense_Mutation p.S146F 0.29 deleterious(0) benign(0.435) TCGA-D3-A8GC-06 17 66511600 66511600 C A PRKAR1A Silent p.L20L 0.45 TCGA-D3-A8GC-06 17 67039550 67039550 G A ABCA9 Intron 0.38 TCGA-D3-A8GC-06 17 68172205 68172205 C T KCNJ2 Missense_Mutation p.S342F 0.42 deleterious(0) possibly_damaging(0.897) TCGA-D3-A8GC-06 17 6978703 6978703 C T CLEC10A Missense_Mutation p.G253E 0.73 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GC-06 17 6979170 6979170 C T CLEC10A Nonsense_Mutation p.W185* 0.73 TCGA-D3-A8GC-06 17 71166332 71166332 G A SSTR2 Missense_Mutation p.G292S 0.50 tolerated(0.16) benign(0.259) TCGA-D3-A8GC-06 17 71282630 71282630 G A CDC42EP4 Missense_Mutation p.L4F 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 17 71357857 71357857 C T SDK2 Silent p.E1811E 0.37 TCGA-D3-A8GC-06 17 71426729 71426729 G A SDK2 Missense_Mutation p.P502S 0.33 deleterious(0) probably_damaging(0.911) TCGA-D3-A8GC-06 17 73559423 73559423 C A LLGL2 Missense_Mutation p.N235K 0.32 deleterious(0) benign(0.119) TCGA-D3-A8GC-06 17 73738823 73738823 C T ITGB4 Silent p.I981I 0.26 TCGA-D3-A8GC-06 17 73753712 73753712 C T ITGB4 3'UTR 0.53 TCGA-D3-A8GC-06 17 73851494 73851494 G A WBP2 5'UTR 0.39 TCGA-D3-A8GC-06 17 73951977 73951977 C T ACOX1 Missense_Mutation p.G197E 0.46 deleterious(0.04) possibly_damaging(0.883) TCGA-D3-A8GC-06 17 73999380 73999380 C T CDK3 Silent p.T231T 0.43 TCGA-D3-A8GC-06 17 74395967 74395967 G A UBE2O Silent p.I397I 0.42 TCGA-D3-A8GC-06 17 74901310 74901310 C T MGAT5B Silent p.S261S 0.41 TCGA-D3-A8GC-06 17 7578449 7578449 C G TP53 Missense_Mutation p.A161P 0.84 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 17 7578476 7578476 G A TP53 Missense_Mutation p.P152S 0.86 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GC-06 17 76089763 76089763 G A TNRC6C Missense_Mutation p.V1406I 0.46 deleterious(0.03) probably_damaging(0.944) TCGA-D3-A8GC-06 17 76396799 76396799 G A PGS1 Missense_Mutation p.R248H 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 17 76503664 76503664 G A DNAH17 Missense_Mutation p.S1483F 0.46 benign(0.091) TCGA-D3-A8GC-06 17 80386511 80386511 G A HEXDC Missense_Mutation p.G91E 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 17 80789947 80789947 C T ZNF750 Silent p.Q128Q 0.40 TCGA-D3-A8GC-06 17 9590112 9590112 C T USP43 Intron 0.64 TCGA-D3-A8GC-06 17 9783806 9783806 C T GLP2R Silent p.F419F 0.79 TCGA-D3-A8GC-06 18 28934614 28934614 G A DSG1 Missense_Mutation p.G819S 0.77 tolerated(0.37) benign(0.129) TCGA-D3-A8GC-06 18 30267169 30267169 C T KLHL14 Missense_Mutation p.R396Q 0.87 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A8GC-06 18 31322862 31322862 C T ASXL3 Missense_Mutation p.S1017F 0.73 probably_damaging(0.999) TCGA-D3-A8GC-06 18 33734825 33734825 C T ELP2 Missense_Mutation p.P445S 0.71 tolerated(0.09) probably_damaging(0.996) TCGA-D3-A8GC-06 18 51851190 51851190 A T STARD6 Missense_Mutation p.L179M 0.88 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 18 52899811 52899811 C T TCF4 Silent p.T628T 0.83 TCGA-D3-A8GC-06 18 5415910 5415910 G A EPB41L3 Silent p.F658F 0.71 TCGA-D3-A8GC-06 18 61154293 61154293 G A SERPINB5 Missense_Mutation p.D95N 0.84 deleterious(0) possibly_damaging(0.619) TCGA-D3-A8GC-06 18 61322948 61322948 G A SERPINB3 Silent p.F372F 0.80 TCGA-D3-A8GC-06 18 61325785 61325785 C T SERPINB3 Missense_Mutation p.R144Q 0.82 tolerated(0.09) benign(0.381) TCGA-D3-A8GC-06 18 61465931 61465931 C T SERPINB7 Missense_Mutation p.S183L 0.78 tolerated(0.68) benign(0.026) TCGA-D3-A8GC-06 18 7231799 7231799 C T LRRC30 Silent p.I221I 0.73 TCGA-D3-A8GC-06 18 74963119 74963119 C T GALR1 Silent p.F205F 0.69 TCGA-D3-A8GC-06 18 76754898 76754898 G A SALL3 Silent p.R969R 0.81 TCGA-D3-A8GC-06 19 10132350 10132350 C T RDH8 Silent p.R307R 0.46 TCGA-D3-A8GC-06 19 10221439 10221439 C T PPAN Silent p.I366I 0.53 TCGA-D3-A8GC-06 19 12246608 12246608 T C ZNF20 Missense_Mutation p.T39A 0.39 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GC-06 19 12460823 12460823 T A ZNF442 Missense_Mutation p.S526C 0.42 tolerated(0.17) probably_damaging(0.945) TCGA-D3-A8GC-06 19 12997942 12997942 C T KLF1 Missense_Mutation p.E5K 0.38 deleterious(0.03) benign(0.118) TCGA-D3-A8GC-06 19 15198686 15198686 G A OR1I1 Silent p.K270K 0.36 TCGA-D3-A8GC-06 19 15640649 15640649 C T CYP4F22 Missense_Mutation p.L118F 0.28 deleterious(0.01) benign(0.306) TCGA-D3-A8GC-06 19 15770100 15770100 C T CYP4F3 Missense_Mutation p.R490C 0.28 deleterious(0.04) benign(0.052) TCGA-D3-A8GC-06 19 15807310 15807310 C T CYP4F12 Missense_Mutation p.S462F 0.51 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 19 16060675 16060675 C T OR10H4 Silent p.F286F 0.45 TCGA-D3-A8GC-06 19 16204368 16204368 A G TPM4 Missense_Mutation p.Y221C 0.34 deleterious(0.01) benign(0.132) TCGA-D3-A8GC-06 19 16688127 16688127 G A MED26 Missense_Mutation p.P172S 0.43 tolerated(0.84) benign(0.001) TCGA-D3-A8GC-06 19 17317087 17317087 C T MYO9B Missense_Mutation p.P1763L 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A8GC-06 19 17366322 17366322 G A USHBP1 Missense_Mutation p.P522S 0.47 deleterious(0.02) possibly_damaging(0.781) TCGA-D3-A8GC-06 19 1783113 1783113 C T ATP8B3 Missense_Mutation p.G1273R 0.42 tolerated(0.59) benign(0.05) TCGA-D3-A8GC-06 19 17922542 17922542 C T B3GNT3 Missense_Mutation p.P244S 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 19 1816768 1816768 G A REXO1 Silent p.V1082V 0.45 TCGA-D3-A8GC-06 19 18273028 18273028 C T PIK3R2 Silent p.P306P 0.33 TCGA-D3-A8GC-06 19 18391842 18391842 G A JUND Silent p.N151N 0.67 TCGA-D3-A8GC-06 19 18727867 18727867 G A TMEM59L Missense_Mutation p.V207M 0.44 tolerated(0.07) probably_damaging(0.995) TCGA-D3-A8GC-06 19 1954061 1954061 C T CSNK1G2 Intron 0.43 TCGA-D3-A8GC-06 19 19655064 19655064 C T CILP2 Silent p.I570I 0.26 TCGA-D3-A8GC-06 19 21720333 21720333 C T ZNF429 Missense_Mutation p.S493F 0.59 tolerated(0.28) possibly_damaging(0.551) TCGA-D3-A8GC-06 19 22941068 22941068 T C ZNF99 Missense_Mutation p.N548S 0.29 tolerated(0.5) benign(0.015) TCGA-D3-A8GC-06 19 2413785 2413785 G A TMPRSS9 Missense_Mutation p.E414K 0.35 deleterious(0.01) possibly_damaging(0.607) TCGA-D3-A8GC-06 19 33353424 33353424 C T SLC7A9 Missense_Mutation p.A183T 0.52 deleterious(0.04) benign(0.167) TCGA-D3-A8GC-06 19 35827128 35827128 G A CD22 Missense_Mutation p.R201Q 0.37 tolerated(1) benign(0.013) TCGA-D3-A8GC-06 19 35827129 35827129 G A CD22 Silent p.R201R 0.38 TCGA-D3-A8GC-06 19 35842700 35842700 C T FFAR1 Silent p.F82F 0.31 TCGA-D3-A8GC-06 19 36018233 36018233 C T SBSN Silent p.G317G 0.50 TCGA-D3-A8GC-06 19 362093 362093 C T THEG 3'UTR 0.71 TCGA-D3-A8GC-06 19 36223170 36223170 C T KMT2B Missense_Mutation p.P1907L 0.44 probably_damaging(0.981) TCGA-D3-A8GC-06 19 3746506 3746506 G A TJP3 Silent p.V687V 0.50 TCGA-D3-A8GC-06 19 37676109 37676109 G A ZNF585B 3'UTR 0.50 TCGA-D3-A8GC-06 19 3783962 3783962 G A MATK Silent p.F145F 0.50 TCGA-D3-A8GC-06 19 38189705 38189705 G A ZNF607 Missense_Mutation p.H443Y 0.48 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A8GC-06 19 38877424 38877424 C T GGN Missense_Mutation p.A160T 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GC-06 19 38959969 38959969 G A RYR1 Missense_Mutation p.G1194E 0.47 probably_damaging(0.995) TCGA-D3-A8GC-06 19 38993562 38993562 G A RYR1 Silent p.L2626L 0.45 TCGA-D3-A8GC-06 19 39025360 39025360 G A RYR1 Missense_Mutation p.E3754K 0.36 benign(0.001) TCGA-D3-A8GC-06 19 39897521 39897521 C A ZFP36 5'UTR 0.42 TCGA-D3-A8GC-06 19 39914599 39914599 A T PLEKHG2 Silent p.G942G 0.37 TCGA-D3-A8GC-06 19 40392728 40392728 C T FCGBP Silent p.G2592G 0.23 TCGA-D3-A8GC-06 19 41510037 41510037 C T CYP2B6 Silent p.I101I 0.45 TCGA-D3-A8GC-06 19 42396720 42396720 C T ARHGEF1 Silent p.F153F 0.48 TCGA-D3-A8GC-06 19 42482941 42482941 G A ATP1A3 Missense_Mutation p.H496Y 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GC-06 19 42820864 42820864 C T TMEM145 Missense_Mutation p.L260F 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 19 44235736 44235736 C T SMG9 3'UTR 0.43 TCGA-D3-A8GC-06 19 4433322 4433322 T A CHAF1A Missense_Mutation p.V820E 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 19 45448660 45448660 G A APOC4 Intron 0.27 TCGA-D3-A8GC-06 19 45570827 45570827 C T CLASRP Missense_Mutation p.P548S 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A8GC-06 19 47878780 47878780 A T DHX34 Missense_Mutation p.S708C 0.30 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GC-06 19 4793084 4793084 C T FEM1A Silent p.F406F 0.35 TCGA-D3-A8GC-06 19 48893799 48893802 AGAA - KDELR1 Intron 0.31 TCGA-D3-A8GC-06 19 49079119 49079119 G A SULT2B1 Intron 0.50 TCGA-D3-A8GC-06 19 49110458 49110458 G A SPACA4 Missense_Mutation p.E75K 0.32 deleterious(0.01) benign(0.425) TCGA-D3-A8GC-06 19 49539032 49539032 G T CGB1 Silent p.A101A 0.18 TCGA-D3-A8GC-06 19 50302966 50302966 C T AP2A1 Silent p.I405I 0.37 TCGA-D3-A8GC-06 19 50453235 50453235 G A SIGLEC11 Missense_Mutation p.P697S 0.50 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-D3-A8GC-06 19 51466627 51466627 G A KLK6 Missense_Mutation p.P126S 0.48 tolerated(0.35) benign(0.009) TCGA-D3-A8GC-06 19 51525672 51525672 C T KLK11 3'UTR 0.62 TCGA-D3-A8GC-06 19 51534059 51534059 C T KLK12 Silent p.G192G 0.40 TCGA-D3-A8GC-06 19 52659761 52659761 C - ZNF836 Frame_Shift_Del p.G392Efs*43 0.11 TCGA-D3-A8GC-06 19 53014466 53014466 C T ZNF578 Missense_Mutation p.R278C 0.44 tolerated(0.1) benign(0.003) TCGA-D3-A8GC-06 19 53453674 53453674 G A ZNF816 Missense_Mutation p.P452S 0.44 deleterious(0.04) benign(0.207) TCGA-D3-A8GC-06 19 53573398 53573398 G A ZNF160 Missense_Mutation p.S130F 0.39 tolerated(0.66) probably_damaging(0.962) TCGA-D3-A8GC-06 19 53644143 53644143 G A ZNF347 Silent p.I647I 0.37 TCGA-D3-A8GC-06 19 54301576 54301576 A G NLRP12 Missense_Mutation p.F950L 0.48 tolerated(0.65) benign(0.074) TCGA-D3-A8GC-06 19 54802140 54802140 C T LILRA3 Missense_Mutation p.G350R 0.51 tolerated(0.34) benign(0.013) TCGA-D3-A8GC-06 19 55019161 55019161 G A LAIR2 Silent p.G42G 0.43 TCGA-D3-A8GC-06 19 55098878 55098878 G A LILRA2 3'UTR 0.53 TCGA-D3-A8GC-06 19 55147174 55147174 C T AC009892.10 3'UTR 0.55 TCGA-D3-A8GC-06 19 55147175 55147175 C T AC009892.10 3'UTR 0.53 TCGA-D3-A8GC-06 19 55220905 55220905 G A AC098784.2 3'Flank 0.32 TCGA-D3-A8GC-06 19 55221358 55221358 C T AC098784.2 3'Flank 0.52 TCGA-D3-A8GC-06 19 55301487 55301487 G A CTB-61M7.1 RNA 0.31 TCGA-D3-A8GC-06 19 55858780 55858780 G A SUV420H2 Missense_Mutation p.G451D 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 19 56171559 56171559 G A U2AF2 Missense_Mutation p.G68S 0.36 tolerated(0.85) benign(0) TCGA-D3-A8GC-06 19 56296989 56296989 G A NLRP11 3'UTR 0.45 TCGA-D3-A8GC-06 19 56370409 56370409 C T NLRP4 Silent p.S550S 0.38 TCGA-D3-A8GC-06 19 57765160 57765160 C T ZNF805 Nonsense_Mutation p.R325* 0.43 TCGA-D3-A8GC-06 19 58773214 58773214 G A ZNF544 Silent p.G414G 0.50 TCGA-D3-A8GC-06 19 58928248 58928248 C T ZNF584 Silent p.H121H 0.38 TCGA-D3-A8GC-06 19 58966440 58966440 C T ZNF324B Intron 0.53 TCGA-D3-A8GC-06 19 6002868 6002868 C T RFX2 Missense_Mutation p.S505N 0.40 tolerated(0.17) possibly_damaging(0.451) TCGA-D3-A8GC-06 19 613379 613379 C T HCN2 Silent p.I572I 0.43 TCGA-D3-A8GC-06 19 6495144 6495144 G A TUBB4A 3'UTR 0.43 TCGA-D3-A8GC-06 19 6530995 6531010 TAGCCAAGCAGCTATA - TNFSF9 5'UTR 0.48 TCGA-D3-A8GC-06 19 6690704 6690704 G A C3 Missense_Mutation p.A1142V 0.37 deleterious(0.01) benign(0.019) TCGA-D3-A8GC-06 19 6694611 6694611 G A C3 Silent p.V995V 0.47 TCGA-D3-A8GC-06 19 7742576 7742576 C T C19orf59 Missense_Mutation p.H50Y 0.40 deleterious(0) benign(0.068) TCGA-D3-A8GC-06 19 8145903 8145903 G A FBN3 Silent p.H2479H 0.10 TCGA-D3-A8GC-06 19 8615067 8615067 G C MYO1F Missense_Mutation p.R360G 0.35 deleterious(0) possibly_damaging(0.693) TCGA-D3-A8GC-06 19 9004909 9004909 C T MUC16 Silent p.P13303P 0.36 TCGA-D3-A8GC-06 19 9046338 9046338 G A MUC16 Missense_Mutation p.P11765S 0.49 benign(0) TCGA-D3-A8GC-06 19 9049388 9049388 C T MUC16 Missense_Mutation p.R10748K 0.44 benign(0.007) TCGA-D3-A8GC-06 19 9064683 9064683 G A MUC16 Missense_Mutation p.S7588L 0.48 unknown(0) TCGA-D3-A8GC-06 19 9069231 9069231 G A MUC16 Missense_Mutation p.S6072F 0.40 unknown(0) TCGA-D3-A8GC-06 19 9071106 9071106 G A MUC16 Missense_Mutation p.S5447L 0.45 unknown(0) TCGA-D3-A8GC-06 19 9073538 9073538 C T MUC16 Missense_Mutation p.M4636I 0.43 unknown(0) TCGA-D3-A8GC-06 19 9075503 9075503 C T MUC16 Silent p.V3981V 0.31 TCGA-D3-A8GC-06 19 9075783 9075783 G A MUC16 Missense_Mutation p.S3888F 0.47 unknown(0) TCGA-D3-A8GC-06 19 9077377 9077377 C T MUC16 Missense_Mutation p.D3357N 0.44 unknown(0) TCGA-D3-A8GC-06 19 9089737 9089737 C T MUC16 Missense_Mutation p.G693E 0.37 unknown(0) TCGA-D3-A8GC-06 19 9577721 9577721 C T ZNF560 Silent p.G634G 0.37 TCGA-D3-A8GC-06 19 9578729 9578729 C T ZNF560 Silent p.G298G 0.33 TCGA-D3-A8GC-06 19 9869117 9869117 G A ZNF846 Silent p.S212S 0.39 TCGA-D3-A8GC-06 1 107691233 107691233 C T NTNG1 Silent p.F6F 0.36 TCGA-D3-A8GC-06 1 110466450 110466450 C T CSF1 Missense_Mutation p.P403S 0.85 tolerated(0.4) benign(0.441) TCGA-D3-A8GC-06 1 110466451 110466451 C T CSF1 Missense_Mutation p.P403L 0.85 tolerated(0.36) benign(0.055) TCGA-D3-A8GC-06 1 110765834 110765834 C T KCNC4 Silent p.F309F 0.50 TCGA-D3-A8GC-06 1 111060573 111060573 G A KCNA10 Silent p.I279I 0.38 TCGA-D3-A8GC-06 1 112042968 112042968 G A ADORA3 Intron 0.38 TCGA-D3-A8GC-06 1 114372627 114372627 G A PTPN22 Missense_Mutation p.P693L 0.38 deleterious(0.02) benign(0.162) TCGA-D3-A8GC-06 1 114372628 114372628 G A PTPN22 Missense_Mutation p.P693S 0.38 tolerated(1) benign(0.076) TCGA-D3-A8GC-06 1 115256528 115256528 T A NRAS Missense_Mutation p.Q61H 0.88 deleterious(0) possibly_damaging(0.531) TCGA-D3-A8GC-06 1 1158652 1158652 G A SDF4 Silent p.L183L 0.91 TCGA-D3-A8GC-06 1 117303208 117303208 G A CD2 Silent p.G189G 0.26 TCGA-D3-A8GC-06 1 118565958 118565958 C T SPAG17 Silent p.T1346T 0.44 TCGA-D3-A8GC-06 1 120277300 120277300 C T PHGDH Missense_Mutation p.S185F 0.38 deleterious(0) possibly_damaging(0.901) TCGA-D3-A8GC-06 1 120279768 120279768 A T PHGDH Missense_Mutation p.H275L 0.93 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GC-06 1 12835073 12835073 G A PRAMEF12 Silent p.R21R 0.92 TCGA-D3-A8GC-06 1 13036573 13036573 G A PRAMEF22 Nonsense_Mutation p.W215* 0.40 TCGA-D3-A8GC-06 1 13669037 13669037 G A PRAMEF14 Silent p.A431A 0.44 TCGA-D3-A8GC-06 1 145112507 145112507 G A SEC22B RNA 0.14 TCGA-D3-A8GC-06 1 149858631 149858631 G T HIST2H2AC Missense_Mutation p.R36L 0.49 deleterious_low_confidence(0.02) benign(0.047) TCGA-D3-A8GC-06 1 149885417 149885417 G A SV2A 5'UTR 0.57 TCGA-D3-A8GC-06 1 149900727 149900727 G A MTMR11 3'UTR 0.45 TCGA-D3-A8GC-06 1 149901707 149901707 G A MTMR11 Silent p.S583S 0.43 TCGA-D3-A8GC-06 1 150429774 150429774 C T RPRD2 Missense_Mutation p.T294I 0.35 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-D3-A8GC-06 1 151820255 151820255 G C THEM5 Missense_Mutation p.A220G 0.43 deleterious(0) possibly_damaging(0.639) TCGA-D3-A8GC-06 1 152081524 152081524 C T TCHH Missense_Mutation p.R1390K 0.37 unknown(0) TCGA-D3-A8GC-06 1 152284838 152284838 G A FLG Missense_Mutation p.R842C 0.42 probably_damaging(0.982) TCGA-D3-A8GC-06 1 152286997 152286997 C T FLG Missense_Mutation p.R122K 0.43 possibly_damaging(0.514) TCGA-D3-A8GC-06 1 152733338 152733338 G A KPRP Missense_Mutation p.R425Q 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.776) TCGA-D3-A8GC-06 1 153317786 153317786 T G PGLYRP4 Missense_Mutation p.Q71P 0.49 tolerated(0.67) benign(0.01) TCGA-D3-A8GC-06 1 153362536 153362536 A C S100A8 3'UTR 0.37 TCGA-D3-A8GC-06 1 155408287 155408287 G T ASH1L Missense_Mutation p.H1887N 0.51 tolerated_low_confidence(0.12) benign(0.062) TCGA-D3-A8GC-06 1 156376908 156376908 G A C1orf61 Silent p.S129S 0.28 TCGA-D3-A8GC-06 1 156823940 156823940 C T INSRR Missense_Mutation p.D81N 0.40 deleterious(0.01) possibly_damaging(0.565) TCGA-D3-A8GC-06 1 157516738 157516738 G A FCRL5 Missense_Mutation p.S101F 0.43 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GC-06 1 15769009 15769009 C T CTRC Silent p.S99S 0.88 TCGA-D3-A8GC-06 1 158260927 158260927 C T CD1C Missense_Mutation p.S22F 0.44 tolerated(1) benign(0.001) TCGA-D3-A8GC-06 1 158300821 158300821 G A CD1B Silent p.I31I 0.37 TCGA-D3-A8GC-06 1 158449997 158449997 G A OR10R2 Silent p.R110R 0.44 TCGA-D3-A8GC-06 1 158583513 158583513 C T SPTA1 Silent p.G2329G 0.44 TCGA-D3-A8GC-06 1 158687098 158687098 C T OR6K3 Missense_Mutation p.D270N 0.42 tolerated(0.06) possibly_damaging(0.764) TCGA-D3-A8GC-06 1 159277610 159277610 G A FCER1A Missense_Mutation p.G221E 0.36 deleterious(0.02) probably_damaging(0.915) TCGA-D3-A8GC-06 1 159557706 159557706 A G APCS 5'UTR 0.42 TCGA-D3-A8GC-06 1 159922079 159922079 G A SLAMF9 Missense_Mutation p.P213S 0.45 tolerated(0.99) benign(0.021) TCGA-D3-A8GC-06 1 160582334 160582334 C T SLAMF1 Missense_Mutation p.D301N 0.52 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A8GC-06 1 160915064 160915064 C T ITLN2 Missense_Mutation p.G282R 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A8GC-06 1 161039454 161039454 C T ARHGAP30 5'UTR 0.48 TCGA-D3-A8GC-06 1 162325035 162325035 C T NOS1AP Silent p.I218I 0.40 TCGA-D3-A8GC-06 1 165218847 165218847 G A LMX1A Silent p.F98F 0.33 TCGA-D3-A8GC-06 1 169510039 169510039 G A F5 Missense_Mutation p.S1430F 0.34 tolerated_low_confidence(0.17) benign(0.029) TCGA-D3-A8GC-06 1 170695443 170695443 C T PRRX1 Missense_Mutation p.S167F 0.50 deleterious(0.04) possibly_damaging(0.809) TCGA-D3-A8GC-06 1 171254464 171254464 T A FMO1 Silent p.A460A 0.40 TCGA-D3-A8GC-06 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.42 tolerated(1) benign(0.003) TCGA-D3-A8GC-06 1 173569310 173569310 C T SLC9C2 Silent p.T58T 0.38 TCGA-D3-A8GC-06 1 174417776 174417776 C T GPR52 Missense_Mutation p.S176F 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GC-06 1 175046776 175046776 C T TNN Silent p.A74A 0.41 TCGA-D3-A8GC-06 1 17531663 17531663 G A PADI1 5'UTR 0.44 TCGA-D3-A8GC-06 1 175375405 175375405 G A TNR Missense_Mutation p.S149L 0.31 deleterious(0) possibly_damaging(0.646) TCGA-D3-A8GC-06 1 17552370 17552370 A G PADI1 Missense_Mutation p.N158S 0.41 tolerated(1) benign(0.005) TCGA-D3-A8GC-06 1 176563710 176563710 G A PAPPA2 Missense_Mutation p.G324R 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 1 177199049 177199049 C T BRINP2 Missense_Mutation p.R13W 0.25 tolerated_low_confidence(0.26) benign(0.037) TCGA-D3-A8GC-06 1 177226321 177226321 C T BRINP2 Missense_Mutation p.S157F 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GC-06 1 177250063 177250063 C T BRINP2 Missense_Mutation p.P584L 0.28 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GC-06 1 179561913 179561913 G A TDRD5 Missense_Mutation p.E55K 0.41 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GC-06 1 180913445 180913445 G - KIAA1614 Intron 0.33 TCGA-D3-A8GC-06 1 182856370 182856370 C T DHX9 Missense_Mutation p.S1205F 0.38 deleterious(0.02) unknown(0) TCGA-D3-A8GC-06 1 18702816 18702816 G A IGSF21 Missense_Mutation p.G343E 0.88 tolerated(0.09) possibly_damaging(0.644) TCGA-D3-A8GC-06 1 197030984 197030984 C T F13B Silent p.G127G 0.51 TCGA-D3-A8GC-06 1 197072825 197072826 - ATTATAGATTGA ASPM In_Frame_Ins p.Q1849_I1852dup 0.21 TCGA-D3-A8GC-06 1 201358363 201358363 T C LAD1 Missense_Mutation p.N36S 0.55 tolerated(0.13) benign(0.098) TCGA-D3-A8GC-06 1 202197134 202197134 C T LGR6 Silent p.L119L 0.39 TCGA-D3-A8GC-06 1 203452618 203452618 C T PRELP Silent p.P102P 0.30 TCGA-D3-A8GC-06 1 204092085 204092085 C A SOX13 Missense_Mutation p.F376L 0.31 tolerated(0.45) benign(0.101) TCGA-D3-A8GC-06 1 204092086 204092086 C T SOX13 Missense_Mutation p.R377C 0.31 deleterious(0) possibly_damaging(0.726) TCGA-D3-A8GC-06 1 204230533 204230533 C T PLEKHA6 Missense_Mutation p.S142N 0.37 tolerated(0.39) benign(0.007) TCGA-D3-A8GC-06 1 204948611 204948611 C T NFASC Silent p.F700F 0.41 TCGA-D3-A8GC-06 1 205350947 205350947 C T LEMD1 Missense_Mutation p.G129R 0.47 tolerated(0.7) benign(0.136) TCGA-D3-A8GC-06 1 21050668 21050668 C A SH2D5 Missense_Mutation p.R236L 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 1 211451482 211451482 C T RCOR3 Silent p.S180S 0.37 TCGA-D3-A8GC-06 1 211451483 211451483 C T RCOR3 Missense_Mutation p.L181F 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 1 216850746 216850746 G A ESRRG Silent p.S53S 0.39 TCGA-D3-A8GC-06 1 222716972 222716972 G A HHIPL2 Missense_Mutation p.S294L 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 1 228109215 228109215 G A WNT9A 3'UTR 0.44 TCGA-D3-A8GC-06 1 228547422 228547422 G A OBSCN Intron 0.30 TCGA-D3-A8GC-06 1 231061326 231061326 G A TTC13 Missense_Mutation p.R509C 0.35 deleterious(0.04) possibly_damaging(0.677) TCGA-D3-A8GC-06 1 231474049 231474049 C T SPRTN 5'UTR 0.46 TCGA-D3-A8GC-06 1 231902976 231902976 G A DISC1 Silent p.T453T 0.50 TCGA-D3-A8GC-06 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.47 tolerated(0.34) benign(0.034) TCGA-D3-A8GC-06 1 237947246 237947246 C T RYR2 Silent p.L4078L 0.33 TCGA-D3-A8GC-06 1 237947944 237947944 G A RYR2 Missense_Mutation p.S4311N 0.33 benign(0.002) TCGA-D3-A8GC-06 1 240070964 240070964 C T CHRM3 Silent p.I71I 0.33 TCGA-D3-A8GC-06 1 240370306 240370306 G A FMN2 Missense_Mutation p.E732K 0.45 unknown(0) TCGA-D3-A8GC-06 1 240371033 240371033 G A FMN2 Missense_Mutation p.G974E 0.28 unknown(0) TCGA-D3-A8GC-06 1 243388569 243388569 G A CEP170 Missense_Mutation p.S5F 0.29 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GC-06 1 245848780 245848780 C T KIF26B Missense_Mutation p.P832L 0.43 deleterious(0) unknown(0) TCGA-D3-A8GC-06 1 247588366 247588366 G A NLRP3 Missense_Mutation p.E541K 0.24 tolerated(0.25) benign(0.103) TCGA-D3-A8GC-06 1 247978263 247978263 G A OR14A16 Silent p.L257L 0.47 TCGA-D3-A8GC-06 1 248004539 248004539 G A OR11L1 Silent p.F220F 0.41 TCGA-D3-A8GC-06 1 248028007 248028007 G A TRIM58 Missense_Mutation p.E173K 0.59 deleterious(0.02) possibly_damaging(0.644) TCGA-D3-A8GC-06 1 248367231 248367231 C T OR2M3 Missense_Mutation p.L288F 0.41 deleterious(0.02) benign(0.417) TCGA-D3-A8GC-06 1 248436910 248436910 C T OR2T33 Missense_Mutation p.M69I 0.32 tolerated(0.17) benign(0.001) TCGA-D3-A8GC-06 1 248637342 248637342 C T OR2T3 Missense_Mutation p.H231Y 0.64 tolerated(1) benign(0.007) TCGA-D3-A8GC-06 1 26881164 26881164 C T RPS6KA1 Missense_Mutation p.P240S 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 1 27632900 27632900 C T WDTC1 3'UTR 0.62 TCGA-D3-A8GC-06 1 27691327 27691327 G A MAP3K6 Silent p.F139F 0.92 TCGA-D3-A8GC-06 1 27736360 27736360 C T WASF2 Missense_Mutation p.G389R 0.48 tolerated(0.63) unknown(0) TCGA-D3-A8GC-06 1 27877877 27877877 G A AHDC1 Silent p.S250S 0.80 TCGA-D3-A8GC-06 1 27939558 27939558 G A FGR Missense_Mutation p.S486F 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 1 28290123 28290123 G A XKR8 Missense_Mutation p.E137K 0.34 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GC-06 1 29606598 29606598 G A PTPRU Missense_Mutation p.E605K 0.81 deleterious(0.01) possibly_damaging(0.593) TCGA-D3-A8GC-06 1 29606600 29606600 G A PTPRU Silent p.E605E 0.83 TCGA-D3-A8GC-06 1 32096391 32096391 G A PEF1 Silent p.V226V 0.46 TCGA-D3-A8GC-06 1 34684308 34684308 G A C1orf94 Silent p.G581G 0.43 TCGA-D3-A8GC-06 1 35250950 35250950 C T GJB3 Missense_Mutation p.A196V 0.49 tolerated(0.64) benign(0.26) TCGA-D3-A8GC-06 1 37267457 37267457 G A GRIK3 Missense_Mutation p.P919S 0.84 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-D3-A8GC-06 1 38095364 38095364 G A RSPO1 5'UTR 0.58 TCGA-D3-A8GC-06 1 39919464 39919464 C T MACF1 Missense_Mutation p.P4884L 0.42 probably_damaging(0.994) TCGA-D3-A8GC-06 1 39919465 39919465 C T MACF1 Silent p.P4884P 0.41 TCGA-D3-A8GC-06 1 40131266 40131266 G A NT5C1A Silent p.V120V 0.96 TCGA-D3-A8GC-06 1 40228846 40228846 G A BMP8B Missense_Mutation p.S326L 0.41 tolerated(0.05) benign(0.062) TCGA-D3-A8GC-06 1 40767488 40767488 G A COL9A2 Silent p.I622I 0.46 TCGA-D3-A8GC-06 1 40775663 40775663 C T COL9A2 Missense_Mutation p.G265S 0.34 deleterious(0) possibly_damaging(0.855) TCGA-D3-A8GC-06 1 40777377 40777377 C T COL9A2 Missense_Mutation p.G143E 0.41 deleterious(0) unknown(0) TCGA-D3-A8GC-06 1 43772659 43772659 C T TIE1 Silent p.I211I 0.33 TCGA-D3-A8GC-06 1 43830434 43830434 G A ELOVL1 Missense_Mutation p.S117F 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 1 43868911 43868911 C T SZT2 Missense_Mutation p.R31C 0.90 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GC-06 1 45805633 45805633 G A TOE1 5'UTR 1.00 TCGA-D3-A8GC-06 1 46080872 46080872 G A NASP Missense_Mutation p.M618I 0.81 tolerated(0.27) possibly_damaging(0.54) TCGA-D3-A8GC-06 1 46080873 46080873 G A NASP Missense_Mutation p.A619T 0.82 tolerated(0.06) benign(0.097) TCGA-D3-A8GC-06 1 46494518 46494518 A T MAST2 Missense_Mutation p.M711L 0.89 deleterious_low_confidence(0) benign(0.313) TCGA-D3-A8GC-06 1 47495724 47495724 C T CYP4X1 Silent p.F80F 0.39 TCGA-D3-A8GC-06 1 47583646 47583646 C T CYP4Z1 3'UTR 0.57 TCGA-D3-A8GC-06 1 48694814 48694814 C T SLC5A9 Missense_Mutation p.P127S 0.43 tolerated_low_confidence(0.24) benign(0.004) TCGA-D3-A8GC-06 1 54059900 54059900 C T GLIS1 Missense_Mutation p.G226S 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 1 57373716 57373716 A G C8A Missense_Mutation p.N437S 0.44 tolerated(0.99) benign(0.006) TCGA-D3-A8GC-06 1 57491661 57491661 G A DAB1 Missense_Mutation p.S260F 0.41 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GC-06 1 6189121 6189121 G A CHD5 Silent p.S1132S 0.87 TCGA-D3-A8GC-06 1 62703923 62703923 C T KANK4 3'UTR 0.50 TCGA-D3-A8GC-06 1 6636587 6636587 G A TAS1R1 Missense_Mutation p.G458E 0.90 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A8GC-06 1 68905268 68905268 C T RPE65 Missense_Mutation p.R234Q 0.92 tolerated(0.14) probably_damaging(0.997) TCGA-D3-A8GC-06 1 70397239 70397239 G A LRRC7 Missense_Mutation p.E195K 0.38 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GC-06 1 74507579 74507579 C T LRRIQ3 Missense_Mutation p.D346N 0.45 tolerated(0.06) possibly_damaging(0.859) TCGA-D3-A8GC-06 1 75108756 75108756 C T C1orf173 Silent p.K90K 0.84 TCGA-D3-A8GC-06 1 77984406 77984406 G C AK5 Silent p.V435V 0.40 TCGA-D3-A8GC-06 1 85392335 85392335 G A MCOLN2 3'UTR 0.45 TCGA-D3-A8GC-06 1 86282488 86282488 C T COL24A1 Missense_Mutation p.G1312R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 1 86334481 86334481 C T COL24A1 Missense_Mutation p.G1059E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 1 89449537 89449537 G A RBMXL1 5'UTR 0.87 TCGA-D3-A8GC-06 1 92185648 92185648 G A TGFBR3 Silent p.F405F 0.38 TCGA-D3-A8GC-06 1 98164935 98164935 C T DPYD Missense_Mutation p.E218K 0.81 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 20 139680 139680 C T DEFB127 3'UTR 0.42 TCGA-D3-A8GC-06 20 1551565 1551565 C T SIRPB1 Missense_Mutation p.D324N 0.51 deleterious(0.02) benign(0.223) TCGA-D3-A8GC-06 20 1961316 1961316 C T PDYN Missense_Mutation p.G140R 0.38 tolerated(0.45) benign(0.021) TCGA-D3-A8GC-06 20 2097469 2097469 C T STK35 Silent p.F350F 0.43 TCGA-D3-A8GC-06 20 2290394 2290394 G A TGM3 Silent p.R33R 0.44 TCGA-D3-A8GC-06 20 2312956 2312956 G A TGM3 Missense_Mutation p.E548K 0.47 deleterious(0.02) probably_damaging(0.976) TCGA-D3-A8GC-06 20 31389227 31389227 C T DNMT3B Silent p.L714L 0.30 TCGA-D3-A8GC-06 20 3147484 3147484 G A LZTS3 Missense_Mutation p.T109I 0.54 tolerated(0.28) probably_damaging(0.969) TCGA-D3-A8GC-06 20 3190227 3190227 C T ITPA Silent p.I10I 0.27 TCGA-D3-A8GC-06 20 34243160 34243160 G A RBM12 Missense_Mutation p.P29S 0.41 deleterious(0) unknown(0) TCGA-D3-A8GC-06 20 35060676 35060676 G A DLGAP4 Missense_Mutation p.E186K 0.41 deleterious(0) benign(0.189) TCGA-D3-A8GC-06 20 36572546 36572546 C T VSTM2L Missense_Mutation p.S169F 0.35 deleterious(0.01) possibly_damaging(0.596) TCGA-D3-A8GC-06 20 36759585 36759585 G A TGM2 Missense_Mutation p.S608F 0.34 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GC-06 20 43386389 43386389 C T RIMS4 Missense_Mutation p.E126K 0.42 deleterious_low_confidence(0) benign(0.003) TCGA-D3-A8GC-06 20 43836959 43836959 C T SEMG1 Nonsense_Mutation p.Q341* 0.37 TCGA-D3-A8GC-06 20 44664487 44664487 C T SLC12A5 Silent p.F140F 0.47 TCGA-D3-A8GC-06 20 46281219 46281219 G A NCOA3 Missense_Mutation p.R1339K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GC-06 20 47990349 47990349 C T KCNB1 Missense_Mutation p.R583Q 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-D3-A8GC-06 20 48604545 48604545 C T SNAI1 Silent p.S249S 0.46 TCGA-D3-A8GC-06 20 50705182 50705182 C T ZFP64 Missense_Mutation p.G129E 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 20 50705183 50705183 C T ZFP64 Splice_Site p.X129_splice 0.43 TCGA-D3-A8GC-06 20 56087770 56087770 C T CTCFL Missense_Mutation p.E457K 0.47 tolerated(0.14) possibly_damaging(0.711) TCGA-D3-A8GC-06 20 57036320 57036320 C T APCDD1L Silent p.R344R 0.48 TCGA-D3-A8GC-06 20 57899485 57899485 C T EDN3 Missense_Mutation p.R230C 0.37 deleterious_low_confidence(0) benign(0.428) TCGA-D3-A8GC-06 20 5904705 5904705 G A CHGB Missense_Mutation p.E639K 0.25 deleterious(0.01) probably_damaging(0.942) TCGA-D3-A8GC-06 20 60511831 60511831 C T CDH4 Missense_Mutation p.P861S 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GC-06 20 60578222 60578222 G A TAF4 Missense_Mutation p.S827L 0.43 probably_damaging(0.945) TCGA-D3-A8GC-06 20 61941195 61941195 G A COL20A1 Nonsense_Mutation p.W397* 0.42 TCGA-D3-A8GC-06 20 62196098 62196098 G A HELZ2 Silent p.V1359V 0.47 TCGA-D3-A8GC-06 20 8713986 8713986 C T PLCB1 Missense_Mutation p.P664S 0.36 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GC-06 20 9317780 9317780 T C PLCB4 Missense_Mutation p.F31S 0.50 tolerated(0.4) benign(0.001) TCGA-D3-A8GC-06 20 9561454 9561454 G A PAK7 Nonsense_Mutation p.Q110* 0.46 TCGA-D3-A8GC-06 21 11039167 11039167 G A BAGE2 RNA 0.10 TCGA-D3-A8GC-06 21 18938038 18938038 C T CXADR 3'UTR 0.85 TCGA-D3-A8GC-06 21 27284057 27284057 G A APP Silent p.N635N 0.91 TCGA-D3-A8GC-06 21 28296683 28296683 C T ADAMTS5 Missense_Mutation p.E828K 0.86 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 21 38390454 38390454 C T RIPPLY3 Missense_Mutation p.P174S 0.87 tolerated_low_confidence(0.12) benign(0.004) TCGA-D3-A8GC-06 21 39087307 39087307 C T KCNJ6 Silent p.R51R 0.90 TCGA-D3-A8GC-06 21 43258144 43258144 G A PRDM15 Silent p.V666V 0.87 TCGA-D3-A8GC-06 21 45774547 45774547 C T TRPM2 Missense_Mutation p.S61L 0.83 tolerated(0.07) possibly_damaging(0.696) TCGA-D3-A8GC-06 21 45815355 45815355 C T TRPM2 Missense_Mutation p.T618I 0.88 tolerated(0.05) benign(0.078) TCGA-D3-A8GC-06 21 47423552 47423552 C T COL6A1 Silent p.V904V 0.99 TCGA-D3-A8GC-06 21 47831564 47831564 C A PCNT Missense_Mutation p.F1859L 0.82 possibly_damaging(0.483) TCGA-D3-A8GC-06 22 16449061 16449061 C T OR11H1 Silent p.G248G 0.87 TCGA-D3-A8GC-06 22 18769239 18769239 C T GGT3P RNA 0.15 TCGA-D3-A8GC-06 22 22599708 22599708 G A VPREB1 Missense_Mutation p.E133K 0.87 tolerated(0.44) probably_damaging(0.945) TCGA-D3-A8GC-06 22 22931084 22931084 C T IGLV2-33 Silent p.S93S 0.95 TCGA-D3-A8GC-06 22 26173568 26173568 G A MYO18B Missense_Mutation p.D630N 0.93 deleterious(0) probably_damaging(0.913) TCGA-D3-A8GC-06 22 26299688 26299688 G A MYO18B Missense_Mutation p.E1680K 0.89 tolerated(0.14) benign(0.022) TCGA-D3-A8GC-06 22 28307089 28307089 A G PITPNB Silent p.V20V 0.93 TCGA-D3-A8GC-06 22 36055243 36055243 C T APOL6 Missense_Mutation p.S211F 0.95 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 22 36886271 36886271 G A FOXRED2 Silent p.P613P 0.92 TCGA-D3-A8GC-06 22 37272137 37272137 G A NCF4 Splice_Site 0.93 TCGA-D3-A8GC-06 22 42112116 42112116 C T MEI1 Silent p.I165I 0.90 TCGA-D3-A8GC-06 22 42172220 42172220 C T MEI1 Silent p.L887L 0.96 TCGA-D3-A8GC-06 22 44221766 44221766 C T SULT4A1 3'UTR 1.00 TCGA-D3-A8GC-06 22 44280170 44280170 C T PNPLA5 Silent p.S335S 0.90 TCGA-D3-A8GC-06 22 50169710 50169710 G A BRD1 Silent p.S942S 0.84 TCGA-D3-A8GC-06 22 50169711 50169711 G A BRD1 Missense_Mutation p.S942F 0.83 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GC-06 22 50750461 50750461 G A DENND6B 3'UTR 0.85 TCGA-D3-A8GC-06 22 51117775 51117775 C T SHANK3 Silent p.H268H 0.42 TCGA-D3-A8GC-06 2 102793157 102793157 C T IL1R1 Nonsense_Mutation p.Q550* 0.25 TCGA-D3-A8GC-06 2 103061746 103061746 C T IL18RAP Nonsense_Mutation p.Q340* 0.32 TCGA-D3-A8GC-06 2 103125307 103125307 G A SLC9A4 Missense_Mutation p.G468E 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 2 103300777 103300777 C T SLC9A2 Silent p.F469F 0.33 TCGA-D3-A8GC-06 2 107423335 107423335 C T ST6GAL2 Silent p.T463T 0.46 TCGA-D3-A8GC-06 2 107460383 107460383 G A ST6GAL2 Silent p.F17F 0.38 TCGA-D3-A8GC-06 2 10866628 10866628 G A ATP6V1C2 Missense_Mutation p.V44M 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 2 109374986 109374986 C T RANBP2 Missense_Mutation p.H862Y 0.42 deleterious(0.03) benign(0.127) TCGA-D3-A8GC-06 2 11312055 11312055 T G PQLC3 Missense_Mutation p.L120R 0.40 deleterious(0) probably_damaging(0.914) TCGA-D3-A8GC-06 2 113343560 113343560 C T CHCHD5 Silent p.A4A 0.50 TCGA-D3-A8GC-06 2 113420476 113420476 C T SLC20A1 Silent p.S638S 0.38 TCGA-D3-A8GC-06 2 113763451 113763451 G A IL36A Translation_Start_Site p.M1? 0.48 tolerated_low_confidence(0.13) benign(0.014) TCGA-D3-A8GC-06 2 113780322 113780322 G A IL36B Missense_Mutation p.H142Y 0.34 deleterious_low_confidence(0) benign(0.047) TCGA-D3-A8GC-06 2 113785447 113785447 C T IL36B Intron 0.42 TCGA-D3-A8GC-06 2 114256983 114256983 C T FOXD4L1 Silent p.F50F 0.67 TCGA-D3-A8GC-06 2 114256984 114256984 C T FOXD4L1 Silent p.L51L 0.65 TCGA-D3-A8GC-06 2 120388460 120388460 G A PCDP1 Missense_Mutation p.D653N 0.45 tolerated(0.7) benign(0.02) TCGA-D3-A8GC-06 2 120635110 120635110 A G PTPN4 Silent p.E120E 0.51 TCGA-D3-A8GC-06 2 130843415 130843415 G A POTEF Missense_Mutation p.P584S 0.50 tolerated_low_confidence(0.15) benign(0.094) TCGA-D3-A8GC-06 2 130877823 130877823 G A POTEF Missense_Mutation p.S89F 0.27 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D3-A8GC-06 2 130951768 130951768 T C TUBA3E Missense_Mutation p.N216S 0.53 tolerated_low_confidence(0.08) benign(0.273) TCGA-D3-A8GC-06 2 131117204 131117204 G A PTPN18 Silent p.E133E 0.42 TCGA-D3-A8GC-06 2 131520161 131520161 G A AMER3 Silent p.E172E 0.46 TCGA-D3-A8GC-06 2 132480203 132480203 G C C2orf27A 5'UTR 0.31 TCGA-D3-A8GC-06 2 133489464 133489464 G A NCKAP5 Silent p.S1763S 0.38 TCGA-D3-A8GC-06 2 135988190 135988190 G A ZRANB3 Missense_Mutation p.T616I 0.36 tolerated(0.26) benign(0.001) TCGA-D3-A8GC-06 2 141250257 141250257 C T LRP1B Missense_Mutation p.E3014K 0.48 benign(0.292) TCGA-D3-A8GC-06 2 141291589 141291589 C T LRP1B Splice_Site p.X2588_splice 0.48 TCGA-D3-A8GC-06 2 142238012 142238012 C T LRP1B Missense_Mutation p.G99D 0.43 probably_damaging(0.982) TCGA-D3-A8GC-06 2 1500507 1500507 G A TPO Missense_Mutation p.G786R 0.32 tolerated(0.12) benign(0.179) TCGA-D3-A8GC-06 2 1500508 1500508 G A TPO Missense_Mutation p.G786E 0.35 tolerated(0.05) benign(0.299) TCGA-D3-A8GC-06 2 150294335 150294335 C T LYPD6 Missense_Mutation p.P38L 0.43 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GC-06 2 158390527 158390527 C T ACVR1C Missense_Mutation p.R462H 0.39 deleterious(0) possibly_damaging(0.892) TCGA-D3-A8GC-06 2 160268999 160268999 C A BAZ2B Nonsense_Mutation p.E842* 0.38 TCGA-D3-A8GC-06 2 166166959 166166959 G A SCN2A Missense_Mutation p.R275Q 0.43 deleterious(0.01) possibly_damaging(0.477) TCGA-D3-A8GC-06 2 166848898 166848898 G A SCN1A Silent p.F1629F 0.44 TCGA-D3-A8GC-06 2 166850671 166850671 T C SCN1A Missense_Mutation p.I1613V 0.28 tolerated(0.19) probably_damaging(0.938) TCGA-D3-A8GC-06 2 169711916 169711916 C T NOSTRIN Missense_Mutation p.P361S 0.35 tolerated(0.93) benign(0.004) TCGA-D3-A8GC-06 2 176996173 176996173 C T HOXD8 Missense_Mutation p.L236F 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 2 179428361 179428361 C T TTN Missense_Mutation p.E27500K 0.39 TCGA-D3-A8GC-06 2 179480469 179480469 A G TTN Missense_Mutation p.V16120A 0.50 TCGA-D3-A8GC-06 2 179611945 179611945 C T TTN Intron 0.39 TCGA-D3-A8GC-06 2 179612925 179612925 G A TTN Intron 0.40 TCGA-D3-A8GC-06 2 179616629 179616629 C T TTN Intron 0.40 TCGA-D3-A8GC-06 2 179621099 179621099 C T TTN Missense_Mutation p.E3702K 0.49 TCGA-D3-A8GC-06 2 179702450 179702450 G A CCDC141 Missense_Mutation p.L1166F 0.36 deleterious(0.01) benign(0.142) TCGA-D3-A8GC-06 2 181927593 181927593 G A UBE2E3 Nonsense_Mutation p.W201* 0.35 TCGA-D3-A8GC-06 2 183088620 183088620 C T PDE1A Silent p.G265G 0.38 TCGA-D3-A8GC-06 2 186671341 186671341 G A FSIP2 Missense_Mutation p.D5859N 0.40 benign(0.001) TCGA-D3-A8GC-06 2 188245197 188245197 C T CALCRL Silent p.V135V 0.40 TCGA-D3-A8GC-06 2 196636525 196636525 G A DNAH7 Silent p.F3764F 0.41 TCGA-D3-A8GC-06 2 196786853 196786853 G A DNAH7 Silent p.S1298S 0.45 TCGA-D3-A8GC-06 2 203242084 203242084 T C BMPR2 5'UTR 0.43 TCGA-D3-A8GC-06 2 207173207 207173207 G A ZDBF2 Missense_Mutation p.D1319N 0.46 tolerated(0.22) benign(0.011) TCGA-D3-A8GC-06 2 210517884 210517884 G A MAP2 5'UTR 0.30 TCGA-D3-A8GC-06 2 211539646 211539646 C T CPS1 Silent p.F1380F 0.51 TCGA-D3-A8GC-06 2 219028892 219028892 G A CXCR1 Missense_Mutation p.S348F 0.47 deleterious(0) unknown(0) TCGA-D3-A8GC-06 2 220480031 220480031 C T STK11IP Missense_Mutation p.P1040S 0.32 tolerated(0.12) probably_damaging(0.998) TCGA-D3-A8GC-06 2 226491828 226491828 G A NYAP2 Missense_Mutation p.G605E 0.67 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-D3-A8GC-06 2 227946866 227946866 C T COL4A4 Missense_Mutation p.G554E 0.39 probably_damaging(0.993) TCGA-D3-A8GC-06 2 228855733 228855733 C T SPHKAP Missense_Mutation p.E1648K 0.41 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GC-06 2 228881166 228881166 C T SPHKAP Silent p.V1468V 0.43 TCGA-D3-A8GC-06 2 231076252 231076252 C T SP110 Silent p.L228L 0.45 TCGA-D3-A8GC-06 2 233348736 233348736 T G ECEL1 Missense_Mutation p.H461P 0.44 tolerated(0.21) possibly_damaging(0.691) TCGA-D3-A8GC-06 2 239003140 239003140 C T SCLY Missense_Mutation p.S370F 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 2 239049641 239049641 C T KLHL30 Silent p.A82A 0.44 TCGA-D3-A8GC-06 2 242814387 242814387 G A CXXC11 Missense_Mutation p.G227E 0.30 tolerated(1) benign(0) TCGA-D3-A8GC-06 2 27151141 27151141 G A DPYSL5 Missense_Mutation p.D207N 0.48 tolerated(0.13) benign(0.329) TCGA-D3-A8GC-06 2 29255834 29255834 G A FAM179A Missense_Mutation p.A683T 0.32 tolerated(0.19) benign(0.038) TCGA-D3-A8GC-06 2 29295218 29295218 C T C2orf71 Missense_Mutation p.S637N 0.43 tolerated(0.43) benign(0.004) TCGA-D3-A8GC-06 2 30957352 30957352 G A CAPN13 Silent p.L587L 0.38 TCGA-D3-A8GC-06 2 32738023 32738023 T C BIRC6 Missense_Mutation p.V3457A 0.32 possibly_damaging(0.874) TCGA-D3-A8GC-06 2 33590564 33590564 G A LTBP1 Missense_Mutation p.D1569N 0.32 tolerated(0.51) benign(0.06) TCGA-D3-A8GC-06 2 36737267 36737267 G T CRIM1 Missense_Mutation p.C548F 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GC-06 2 38975743 38975745 GTG TA SRSF7 Frame_Shift_Del p.S146Lfs*39 0.29 TCGA-D3-A8GC-06 2 42671398 42671398 G A KCNG3 Silent p.F329F 0.56 TCGA-D3-A8GC-06 2 44508542 44508542 C T SLC3A1 Silent p.I209I 0.46 TCGA-D3-A8GC-06 2 44569623 44569623 C A PREPL Missense_Mutation p.D229Y 0.46 deleterious(0.01) possibly_damaging(0.895) TCGA-D3-A8GC-06 2 46739488 46739488 G A ATP6V1E2 Silent p.L121L 0.40 TCGA-D3-A8GC-06 2 47748934 47748934 G A KCNK12 Silent p.T135T 0.57 TCGA-D3-A8GC-06 2 51254774 51254774 C T NRXN1 Missense_Mutation p.G213E 0.40 tolerated(0.11) benign(0.016) TCGA-D3-A8GC-06 2 55771183 55771183 G A CCDC104 Silent p.E250E 0.40 TCGA-D3-A8GC-06 2 71891477 71891477 G A DYSF Missense_Mutation p.D1695N 0.39 deleterious(0) probably_damaging(0.965) TCGA-D3-A8GC-06 2 74043656 74043656 G A C2orf78 Missense_Mutation p.R769Q 0.47 tolerated(1) benign(0.004) TCGA-D3-A8GC-06 2 74143813 74143813 G A ACTG2 Missense_Mutation p.G303D 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GC-06 2 75720485 75720485 G A EVA1A Silent p.F112F 0.11 TCGA-D3-A8GC-06 2 79386625 79386625 C T REG3A 5'UTR 0.55 TCGA-D3-A8GC-06 2 89292377 89292377 G A IGKV1-8 Silent p.L7L 0.38 TCGA-D3-A8GC-06 2 98382603 98382603 G A TMEM131 Missense_Mutation p.S1566F 0.51 deleterious_low_confidence(0.01) benign(0.424) TCGA-D3-A8GC-06 2 99008360 99008360 G A CNGA3 Silent p.L200L 0.43 TCGA-D3-A8GC-06 3 102187971 102187971 C T ZPLD1 Missense_Mutation p.L325F 0.31 tolerated(0.25) possibly_damaging(0.474) TCGA-D3-A8GC-06 3 107097210 107097210 G A CCDC54 Nonsense_Mutation p.W259* 0.45 TCGA-D3-A8GC-06 3 108229344 108229344 A G MYH15 Missense_Mutation p.F32L 0.36 deleterious(0.02) benign(0.006) TCGA-D3-A8GC-06 3 111312526 111312526 C T ZBED2 Missense_Mutation p.E175K 0.47 deleterious(0.02) benign(0.211) TCGA-D3-A8GC-06 3 111602855 111602855 G A PHLDB2 Intron 0.48 TCGA-D3-A8GC-06 3 111782400 111782400 C T TMPRSS7 Silent p.S366S 0.42 TCGA-D3-A8GC-06 3 112218227 112218227 G A BTLA 5'UTR 0.40 TCGA-D3-A8GC-06 3 113187073 113187073 G A SPICE1 Silent p.V356V 0.41 TCGA-D3-A8GC-06 3 113765574 113765574 C A KIAA1407 Silent p.V45V 0.33 TCGA-D3-A8GC-06 3 120976075 120976075 C T STXBP5L Missense_Mutation p.P576L 0.34 tolerated(0.08) benign(0.069) TCGA-D3-A8GC-06 3 121305032 121305032 C T ARGFX Missense_Mutation p.S178F 0.39 tolerated(0.09) benign(0.075) TCGA-D3-A8GC-06 3 121340699 121340699 G A FBXO40 Silent p.L141L 0.48 TCGA-D3-A8GC-06 3 121973164 121973164 G A CASR Missense_Mutation p.G43E 0.49 tolerated(1) probably_damaging(0.974) TCGA-D3-A8GC-06 3 12421297 12421297 C T PPARG Silent p.S59S 0.44 TCGA-D3-A8GC-06 3 124303654 124303654 G C KALRN 5'UTR 0.32 TCGA-D3-A8GC-06 3 124398354 124398354 C T KALRN Missense_Mutation p.T759I 0.47 deleterious(0.04) benign(0.096) TCGA-D3-A8GC-06 3 124826861 124826861 T C SLC12A8 Missense_Mutation p.N390S 0.33 tolerated(0.23) possibly_damaging(0.483) TCGA-D3-A8GC-06 3 126208133 126208133 G A UROC1 Missense_Mutation p.S625F 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 3 129281694 129281694 G A PLXND1 Silent p.I1587I 0.44 TCGA-D3-A8GC-06 3 130290016 130290016 C T COL6A6 Missense_Mutation p.T919I 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 3 130828669 130828669 T A NEK11 Missense_Mutation p.I120N 0.43 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GC-06 3 13371960 13371960 C T NUP210 Silent p.K1370K 0.44 TCGA-D3-A8GC-06 3 136574303 136574303 G A SLC35G2 Missense_Mutation p.G334E 0.41 tolerated(0.1) probably_damaging(1) TCGA-D3-A8GC-06 3 138664329 138664329 G A FOXL2 3'UTR 0.47 TCGA-D3-A8GC-06 3 140284935 140284935 G A CLSTN2 Missense_Mutation p.G903E 0.51 tolerated(1) benign(0) TCGA-D3-A8GC-06 3 142383082 142383082 G A PLS1 Translation_Start_Site p.M1? 0.40 deleterious(0.02) benign(0.025) TCGA-D3-A8GC-06 3 151082855 151082855 G A MED12L Missense_Mutation p.D981N 0.48 deleterious(0) possibly_damaging(0.887) TCGA-D3-A8GC-06 3 15258923 15258936 CTATCCTAGTTCAG TCTATCCTAGT CAPN7 Splice_Site p.X71_splice 0.10 TCGA-D3-A8GC-06 3 160155691 160155691 C T TRIM59 3'UTR 0.39 TCGA-D3-A8GC-06 3 160952982 160952982 C T NMD3 Missense_Mutation p.R187C 0.60 deleterious(0.01) possibly_damaging(0.738) TCGA-D3-A8GC-06 3 167246938 167246938 G A WDR49 Missense_Mutation p.H418Y 0.49 deleterious(0) probably_damaging(0.921) TCGA-D3-A8GC-06 3 169664450 169664450 C T RP11-379K17.4 RNA 0.41 TCGA-D3-A8GC-06 3 172070871 172070871 C T FNDC3B Silent p.Y931Y 0.44 TCGA-D3-A8GC-06 3 172070872 172070872 C T FNDC3B Missense_Mutation p.R932W 0.45 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GC-06 3 173998307 173998307 C T NLGN1 Silent p.F562F 0.51 TCGA-D3-A8GC-06 3 179458056 179458056 C T USP13 Missense_Mutation p.P426S 0.37 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GC-06 3 180359910 180359910 A G CCDC39 Missense_Mutation p.V582A 0.37 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GC-06 3 183446484 183446484 A G YEATS2 Missense_Mutation p.I219M 0.48 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GC-06 3 18390899 18390899 G A SATB1 Silent p.P717P 0.39 TCGA-D3-A8GC-06 3 184654106 184654106 G A VPS8 Missense_Mutation p.V991I 0.42 tolerated(1) benign(0.006) TCGA-D3-A8GC-06 3 185146557 185146557 C T MAP3K13 Missense_Mutation p.P63L 0.31 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-D3-A8GC-06 3 186038348 186038348 G A DGKG 5'UTR 0.64 TCGA-D3-A8GC-06 3 186337708 186337708 C T AHSG Silent p.T246T 0.45 TCGA-D3-A8GC-06 3 186953779 186953779 T C MASP1 Missense_Mutation p.H627R 0.43 deleterious(0.05) benign(0.003) TCGA-D3-A8GC-06 3 189526085 189526085 C T TP63 Silent p.L117L 0.37 TCGA-D3-A8GC-06 3 193061824 193061824 G A ATP13A5 Missense_Mutation p.R279C 0.35 tolerated(0.25) benign(0.053) TCGA-D3-A8GC-06 3 194063156 194063156 G A CPN2 Silent p.A92A 0.42 TCGA-D3-A8GC-06 3 36779866 36779866 C T DCLK3 Nonsense_Mutation p.W95* 0.42 TCGA-D3-A8GC-06 3 38592592 38592592 G A SCN5A Silent p.I1757I 0.47 TCGA-D3-A8GC-06 3 38646268 38646268 C T SCN5A Silent p.G490G 0.31 TCGA-D3-A8GC-06 3 38647623 38647623 C T SCN5A Missense_Mutation p.G386E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 3 38655236 38655236 G A SCN5A Intron 0.57 TCGA-D3-A8GC-06 3 38739380 38739380 G A SCN10A Silent p.I1777I 0.38 TCGA-D3-A8GC-06 3 38765025 38765025 G A SCN10A Missense_Mutation p.S1083F 0.50 tolerated(0.1) possibly_damaging(0.824) TCGA-D3-A8GC-06 3 3887733 3887733 G A LRRN1 Missense_Mutation p.E470K 0.40 tolerated(0.69) benign(0.102) TCGA-D3-A8GC-06 3 430992 430992 C T CHL1 Missense_Mutation p.P769S 0.36 tolerated(0.08) possibly_damaging(0.557) TCGA-D3-A8GC-06 3 43121883 43121883 G A POMGNT2 Silent p.A347A 0.40 TCGA-D3-A8GC-06 3 43640061 43640061 A G ANO10 Silent p.G145G 0.52 TCGA-D3-A8GC-06 3 45127559 45127559 C T CDCP1 Silent p.K694K 0.38 TCGA-D3-A8GC-06 3 45135148 45135148 G A CDCP1 Silent p.S416S 0.37 TCGA-D3-A8GC-06 3 46491369 46491369 G A LTF Silent p.F344F 0.56 TCGA-D3-A8GC-06 3 47161907 47161907 T - SETD2 Frame_Shift_Del p.R1407Gfs*5 0.22 TCGA-D3-A8GC-06 3 48473797 48473797 C T CCDC51 3'UTR 0.49 TCGA-D3-A8GC-06 3 49897072 49897072 G A CAMKV Silent p.T395T 0.35 TCGA-D3-A8GC-06 3 49947860 49947860 G A MON1A Silent p.S454S 0.07 TCGA-D3-A8GC-06 3 50355611 50355611 G A HYAL2 Silent p.H457H 0.43 TCGA-D3-A8GC-06 3 51265427 51265427 G A DOCK3 Missense_Mutation p.E519K 0.32 deleterious(0) possibly_damaging(0.897) TCGA-D3-A8GC-06 3 51352450 51352450 C T DOCK3 Missense_Mutation p.P1098L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GC-06 3 52388910 52388910 C T DNAH1 Missense_Mutation p.P1178S 0.33 benign(0.14) TCGA-D3-A8GC-06 3 57847723 57847723 G A SLMAP Missense_Mutation p.M292I 0.39 tolerated(0.06) benign(0.437) TCGA-D3-A8GC-06 3 58155359 58155359 C T FLNB Missense_Mutation p.S2518F 0.42 deleterious(0) benign(0.064) TCGA-D3-A8GC-06 3 58395341 58395341 G A PXK Missense_Mutation p.R464Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GC-06 3 63975963 63975963 C T ATXN7 Silent p.S491S 0.39 TCGA-D3-A8GC-06 3 71804300 71804300 C T GPR27 Missense_Mutation p.P367L 0.40 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GC-06 3 8775648 8775648 C T CAV3 Missense_Mutation p.P29L 0.47 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GC-06 3 89468393 89468393 C T EPHA3 Missense_Mutation p.P643S 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GC-06 3 95374099 95374099 C T MTHFD2P1 RNA 0.34 TCGA-D3-A8GC-06 3 9594353 9594353 G A LHFPL4 Missense_Mutation p.S4L 0.32 deleterious(0.01) benign(0.034) TCGA-D3-A8GC-06 3 9594355 9594355 G A LHFPL4 Silent p.P3P 0.32 TCGA-D3-A8GC-06 3 9594356 9594356 G A LHFPL4 Missense_Mutation p.P3L 0.33 deleterious(0) benign(0.15) TCGA-D3-A8GC-06 3 97664106 97664106 G A MINA Silent p.D440D 0.48 TCGA-D3-A8GC-06 3 97887550 97887550 G A OR5H15 Missense_Mutation p.E3K 0.32 tolerated(0.44) benign(0.001) TCGA-D3-A8GC-06 4 107847015 107847015 C T DKK2 Missense_Mutation p.R105K 0.85 tolerated(0.8) probably_damaging(0.982) TCGA-D3-A8GC-06 4 110909765 110909765 C T EGF Silent p.V878V 0.83 TCGA-D3-A8GC-06 4 115769471 115769471 G A NDST4 Missense_Mutation p.L614F 0.75 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GC-06 4 118975744 118975744 C T NDST3 Missense_Mutation p.H227Y 0.77 deleterious(0.02) possibly_damaging(0.741) TCGA-D3-A8GC-06 4 121961106 121961106 C T NDNF Missense_Mutation p.D98N 0.76 tolerated(0.39) benign(0.018) TCGA-D3-A8GC-06 4 138453264 138453264 C T PCDH18 5'UTR 0.84 TCGA-D3-A8GC-06 4 155241974 155241974 C T DCHS2 Missense_Mutation p.G1071E 0.77 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 4 155507358 155507358 G A FGA Missense_Mutation p.P408L 0.78 deleterious(0) possibly_damaging(0.893) TCGA-D3-A8GC-06 4 155507362 155507362 T G FGA Missense_Mutation p.N407H 0.78 deleterious_low_confidence(0) benign(0.076) TCGA-D3-A8GC-06 4 156136184 156136184 G A NPY2R Missense_Mutation p.V365I 0.83 tolerated(0.42) benign(0.018) TCGA-D3-A8GC-06 4 157684338 157684338 C T PDGFC Silent p.K314K 0.79 TCGA-D3-A8GC-06 4 158284183 158284183 G A GRIA2 Missense_Mutation p.S880N 0.85 deleterious_low_confidence(0.03) benign(0.366) TCGA-D3-A8GC-06 4 160275040 160275040 C A RAPGEF2 Nonsense_Mutation p.S1337* 0.55 TCGA-D3-A8GC-06 4 164246903 164246903 A G NPY1R Missense_Mutation p.I236T 0.81 tolerated(0.09) benign(0.027) TCGA-D3-A8GC-06 4 175897725 175897725 C T ADAM29 Missense_Mutation p.S350L 0.80 deleterious(0.05) benign(0.021) TCGA-D3-A8GC-06 4 187093167 187093167 C A FAM149A 3'UTR 0.74 TCGA-D3-A8GC-06 4 187196999 187196999 G A F11 Missense_Mutation p.D182N 0.78 tolerated(0.57) benign(0.001) TCGA-D3-A8GC-06 4 20569216 20569216 G A SLIT2 Missense_Mutation p.E976K 0.74 tolerated(0.06) benign(0.364) TCGA-D3-A8GC-06 4 25370716 25370716 C T ZCCHC4 Missense_Mutation p.S491F 0.87 tolerated(0.33) possibly_damaging(0.831) TCGA-D3-A8GC-06 4 2695396 2695396 C T FAM193A Missense_Mutation p.P672S 0.78 tolerated(0.63) probably_damaging(0.994) TCGA-D3-A8GC-06 4 37903799 37903799 C T TBC1D1 Missense_Mutation p.S28F 0.79 tolerated(0.07) benign(0.013) TCGA-D3-A8GC-06 4 57352533 57352533 C T SRP72 Silent p.L377L 0.19 TCGA-D3-A8GC-06 4 65274860 65274860 C T TECRL Silent p.R70R 0.89 TCGA-D3-A8GC-06 4 68812281 68812281 C T TMPRSS11A Missense_Mutation p.G7E 0.87 tolerated(1) benign(0.039) TCGA-D3-A8GC-06 4 70707655 70707655 G A SULT1E1 3'UTR 1.00 TCGA-D3-A8GC-06 4 8010810 8010810 C T ABLIM2 Silent p.G481G 0.76 TCGA-D3-A8GC-06 4 80246882 80246882 C T NAA11 Silent p.G50G 0.81 TCGA-D3-A8GC-06 4 8229658 8229658 G A SH3TC1 Missense_Mutation p.R746K 0.74 tolerated(0.39) possibly_damaging(0.648) TCGA-D3-A8GC-06 4 8229659 8229659 G A SH3TC1 Silent p.R746R 0.74 TCGA-D3-A8GC-06 4 8584366 8584366 G A GPR78 Missense_Mutation p.M259I 0.74 tolerated(1) benign(0) TCGA-D3-A8GC-06 5 112155038 112155038 C T APC Missense_Mutation p.P437S 0.46 benign(0.019) TCGA-D3-A8GC-06 5 112403780 112403780 G A MCC Missense_Mutation p.P676S 0.39 tolerated(0.58) benign(0.018) TCGA-D3-A8GC-06 5 112403781 112403781 G A MCC Silent p.S675S 0.38 TCGA-D3-A8GC-06 5 115346483 115346483 C T AQPEP Silent p.Y713Y 0.41 TCGA-D3-A8GC-06 5 118969769 118969769 C T FAM170A Missense_Mutation p.S109F 0.41 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GC-06 5 120022114 120022114 G A PRR16 Missense_Mutation p.E186K 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 5 122724133 122724133 T C CEP120 Missense_Mutation p.I475V 0.44 tolerated(0.34) benign(0.007) TCGA-D3-A8GC-06 5 126676310 126676310 G A MEGF10 Missense_Mutation p.E103K 0.44 deleterious(0.01) benign(0.092) TCGA-D3-A8GC-06 5 128302056 128302056 G A SLC27A6 Missense_Mutation p.E76K 0.42 tolerated(0.11) possibly_damaging(0.611) TCGA-D3-A8GC-06 5 128958005 128958005 T A ADAMTS19 Silent p.L572L 0.48 TCGA-D3-A8GC-06 5 130815390 130815390 G A RAPGEF6 Missense_Mutation p.P633S 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A8GC-06 5 131411654 131411654 G A CSF2 3'UTR 0.29 TCGA-D3-A8GC-06 5 134010884 134010884 C T SEC24A Silent p.I376I 0.35 TCGA-D3-A8GC-06 5 136403428 136403428 G A SPOCK1 Missense_Mutation p.P189S 0.49 tolerated(0.68) benign(0.001) TCGA-D3-A8GC-06 5 137464174 137464174 G A NME5 Missense_Mutation p.P144S 0.29 tolerated(0.05) probably_damaging(0.962) TCGA-D3-A8GC-06 5 13753412 13753412 G A DNAH5 Missense_Mutation p.P3601L 0.45 possibly_damaging(0.908) TCGA-D3-A8GC-06 5 13753413 13753413 G A DNAH5 Missense_Mutation p.P3601S 0.43 possibly_damaging(0.876) TCGA-D3-A8GC-06 5 137534166 137534166 G A CDC23 Silent p.D293D 0.37 TCGA-D3-A8GC-06 5 137681256 137681256 C T FAM53C Silent p.P293P 0.44 TCGA-D3-A8GC-06 5 13850770 13850770 G A DNAH5 Missense_Mutation p.S1702F 0.42 possibly_damaging(0.788) TCGA-D3-A8GC-06 5 13864573 13864573 C T DNAH5 Missense_Mutation p.G1510E 0.42 benign(0) TCGA-D3-A8GC-06 5 13870956 13870956 C T DNAH5 Missense_Mutation p.D1252N 0.41 possibly_damaging(0.539) TCGA-D3-A8GC-06 5 13876889 13876889 G A DNAH5 Silent p.P1100P 0.41 TCGA-D3-A8GC-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.27 probably_damaging(0.931) TCGA-D3-A8GC-06 5 13894784 13894784 A T DNAH5 Nonsense_Mutation p.Y802* 0.39 TCGA-D3-A8GC-06 5 139941606 139941606 G A APBB3 Intron 0.50 TCGA-D3-A8GC-06 5 140176098 140176098 G A PCDHA2 Missense_Mutation p.V517M 0.32 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-D3-A8GC-06 5 140176476 140176476 C T PCDHA2 Missense_Mutation p.P643S 0.31 tolerated_low_confidence(0.15) benign(0.066) TCGA-D3-A8GC-06 5 140249661 140249661 G A PCDHA11 Missense_Mutation p.G325R 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A8GC-06 5 140347685 140347685 G A PCDHAC2 Missense_Mutation p.G445E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 5 140433482 140433482 C T PCDHB1 Silent p.G809G 0.40 TCGA-D3-A8GC-06 5 140481610 140481610 C T PCDHB3 Silent p.F459F 0.44 TCGA-D3-A8GC-06 5 140515424 140515424 G A PCDHB5 Silent p.K136K 0.39 TCGA-D3-A8GC-06 5 140573535 140573535 C T PCDHB10 Silent p.I470I 0.26 TCGA-D3-A8GC-06 5 140604818 140604818 G A PCDHB14 Missense_Mutation p.E581K 0.18 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-D3-A8GC-06 5 140744501 140744501 C T PCDHGA5 Missense_Mutation p.R202C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 5 140788821 140788821 C T PCDHGB6 Missense_Mutation p.S351F 0.19 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A8GC-06 5 140812331 140812331 C T PCDHGA12 Missense_Mutation p.P669S 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-D3-A8GC-06 5 141335823 141335823 C T PCDH12 Missense_Mutation p.E532K 0.33 tolerated(0.13) possibly_damaging(0.755) TCGA-D3-A8GC-06 5 147902873 147902873 C T HTR4 Silent p.R130R 0.36 TCGA-D3-A8GC-06 5 148386512 148386512 G A SH3TC2 Missense_Mutation p.P1203S 0.39 tolerated(0.66) benign(0.016) TCGA-D3-A8GC-06 5 149915324 149915324 C T NDST1 Silent p.P438P 0.49 TCGA-D3-A8GC-06 5 149927875 149927875 C T NDST1 Silent p.L747L 0.39 TCGA-D3-A8GC-06 5 150275711 150275711 G A ZNF300 Nonsense_Mutation p.Q380* 0.32 TCGA-D3-A8GC-06 5 150310952 150310952 G A ZNF300P1 RNA 0.51 TCGA-D3-A8GC-06 5 15928252 15928252 C T FBXL7 Silent p.S127S 0.50 TCGA-D3-A8GC-06 5 160753448 160753448 C T GABRB2 Missense_Mutation p.R373Q 0.56 tolerated(0.59) benign(0.002) TCGA-D3-A8GC-06 5 167551888 167551888 G A TENM2 Missense_Mutation p.G681E 0.47 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GC-06 5 169675600 169675600 G A LCP2 3'UTR 0.52 TCGA-D3-A8GC-06 5 176306772 176306772 A C UNC5A Missense_Mutation p.N805T 0.44 deleterious(0.03) benign(0.36) TCGA-D3-A8GC-06 5 176636700 176636700 C T NSD1 Missense_Mutation p.P434S 0.64 tolerated_low_confidence(0.27) possibly_damaging(0.784) TCGA-D3-A8GC-06 5 177690315 177690315 C T COL23A1 Missense_Mutation p.G178E 0.26 deleterious(0) unknown(0) TCGA-D3-A8GC-06 5 179565145 179565145 C T RASGEF1C 5'UTR 0.36 TCGA-D3-A8GC-06 5 179751241 179751241 G A GFPT2 Silent p.C247C 0.45 TCGA-D3-A8GC-06 5 21975236 21975236 G T CDH12 Missense_Mutation p.P164T 0.45 deleterious(0.05) benign(0.052) TCGA-D3-A8GC-06 5 31317909 31317909 G A CDH6 Missense_Mutation p.R587Q 0.37 tolerated(0.11) probably_damaging(0.992) TCGA-D3-A8GC-06 5 31317910 31317910 G A CDH6 Silent p.R587R 0.37 TCGA-D3-A8GC-06 5 32061208 32061208 C T PDZD2 Missense_Mutation p.R807C 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 5 35955688 35955688 C T UGT3A1 Intron 0.46 TCGA-D3-A8GC-06 5 39331833 39331833 C T C9 Missense_Mutation p.G187E 0.39 deleterious(0.02) possibly_damaging(0.686) TCGA-D3-A8GC-06 5 40979946 40979946 G A C7 Missense_Mutation p.S762N 0.38 tolerated(0.7) benign(0.001) TCGA-D3-A8GC-06 5 41058176 41058176 G A MROH2B Missense_Mutation p.H249Y 0.58 tolerated(0.55) benign(0.002) TCGA-D3-A8GC-06 5 41176788 41176788 C T C6 Silent p.V319V 0.38 TCGA-D3-A8GC-06 5 42719368 42719368 G A GHR Missense_Mutation p.G587S 0.31 tolerated(1) benign(0.01) TCGA-D3-A8GC-06 5 52394376 52394376 G A MOCS2 3'UTR 0.39 TCGA-D3-A8GC-06 5 68715269 68715269 C G MARVELD2 Missense_Mutation p.S19R 0.32 tolerated(0.54) benign(0.001) TCGA-D3-A8GC-06 5 68840766 68840766 C T OCLN Missense_Mutation p.S358L 0.29 tolerated(0.1) benign(0.006) TCGA-D3-A8GC-06 5 71490416 71490418 TTC - MAP1B In_Frame_Del p.F412del 0.33 TCGA-D3-A8GC-06 5 73168998 73168998 G A ARHGEF28 Missense_Mutation p.R914Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 5 78322255 78322255 C T DMGDH Missense_Mutation p.G728R 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 5 7889360 7889360 T C MTRR Silent p.S460S 0.42 TCGA-D3-A8GC-06 5 79354532 79354532 G A THBS4 Silent p.G217G 0.49 TCGA-D3-A8GC-06 5 89924493 89924493 G A GPR98 Silent p.P451P 0.44 TCGA-D3-A8GC-06 5 90074838 90074838 G A GPR98 Missense_Mutation p.E4336K 0.36 possibly_damaging(0.874) TCGA-D3-A8GC-06 5 90149260 90149260 G A GPR98 Silent p.G5788G 0.28 TCGA-D3-A8GC-06 6 102266332 102266332 C T GRIK2 Missense_Mutation p.R431C 0.90 deleterious(0.01) possibly_damaging(0.826) TCGA-D3-A8GC-06 6 111696674 111696674 G A REV3L Nonsense_Mutation p.R962* 0.84 TCGA-D3-A8GC-06 6 117127866 117127866 G A GPRC6A Silent p.S334S 0.91 TCGA-D3-A8GC-06 6 130761782 130761782 C T TMEM200A Missense_Mutation p.S72F 0.88 deleterious(0.04) possibly_damaging(0.759) TCGA-D3-A8GC-06 6 131904493 131904493 A C ARG1 Splice_Site p.X230_splice 0.85 TCGA-D3-A8GC-06 6 133050084 133050084 G A VNN3 Intron 0.86 TCGA-D3-A8GC-06 6 143074855 143074855 G A HIVEP2 Missense_Mutation p.L2244F 0.84 tolerated(0.07) benign(0.342) TCGA-D3-A8GC-06 6 152737789 152737789 C T SYNE1 Missense_Mutation p.G1928D 0.89 benign(0.236) TCGA-D3-A8GC-06 6 160577039 160577039 C G SLC22A1 Missense_Mutation p.L511V 0.85 deleterious(0.01) benign(0.344) TCGA-D3-A8GC-06 6 160577040 160577040 T C SLC22A1 Missense_Mutation p.L511P 0.85 deleterious(0.01) benign(0.33) TCGA-D3-A8GC-06 6 161016394 161016394 G A LPA Missense_Mutation p.S1154F 0.88 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GC-06 6 25969561 25969561 C T TRIM38 Silent p.L140L 0.83 TCGA-D3-A8GC-06 6 31939798 31939798 G A STK19 Missense_Mutation p.D9N 0.88 tolerated_low_confidence(0.08) possibly_damaging(0.821) TCGA-D3-A8GC-06 6 32029321 32029321 C T TNXB Missense_Mutation p.D2449N 0.82 probably_damaging(0.987) TCGA-D3-A8GC-06 6 33037612 33037612 C T HLA-DPA1 Missense_Mutation p.G51E 0.84 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 6 33630379 33630379 G A ITPR3 Silent p.Q262Q 0.96 TCGA-D3-A8GC-06 6 36298340 36298340 G A C6orf222 Missense_Mutation p.P43L 0.85 deleterious(0.01) benign(0.116) TCGA-D3-A8GC-06 6 38919100 38919100 G A DNAH8 Nonsense_Mutation p.W3868* 0.84 TCGA-D3-A8GC-06 6 41743304 41743304 C T FRS3 Missense_Mutation p.G36R 0.73 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 6 55684615 55684615 C T BMP5 Missense_Mutation p.R174Q 0.85 tolerated(0.4) benign(0.153) TCGA-D3-A8GC-06 6 55923968 55923968 G A COL21A1 Missense_Mutation p.P894L 0.92 tolerated(0.21) possibly_damaging(0.908) TCGA-D3-A8GC-06 6 69949100 69949100 G A BAI3 Silent p.Q932Q 0.83 TCGA-D3-A8GC-06 6 72011222 72011222 A G OGFRL1 Missense_Mutation p.K276E 0.90 deleterious(0) benign(0.217) TCGA-D3-A8GC-06 6 75847229 75847229 C A COL12A1 Missense_Mutation p.W1773L 0.86 probably_damaging(0.998) TCGA-D3-A8GC-06 6 76022793 76022793 C T FILIP1 Missense_Mutation p.E919K 0.84 tolerated(0.76) benign(0.036) TCGA-D3-A8GC-06 6 79657405 79657405 A T PHIP Missense_Mutation p.L1381I 0.83 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GC-06 6 80629233 80629233 G A ELOVL4 Silent p.I191I 0.82 TCGA-D3-A8GC-06 7 100679297 100679297 C T MUC17 Missense_Mutation p.L1534F 0.31 unknown(0) TCGA-D3-A8GC-06 7 100730602 100730602 C T TRIM56 Silent p.S3S 0.46 TCGA-D3-A8GC-06 7 101259544 101259544 G A MYL10 Silent p.F163F 0.39 TCGA-D3-A8GC-06 7 101266329 101266329 G A MYL10 Silent p.N99N 0.41 TCGA-D3-A8GC-06 7 102518035 102518035 G A FBXL13 Missense_Mutation p.P505L 0.27 tolerated(0.66) benign(0.001) TCGA-D3-A8GC-06 7 103124123 103124123 C T RELN Silent p.Q3386Q 0.49 TCGA-D3-A8GC-06 7 103159936 103159936 C T RELN Missense_Mutation p.D2566N 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GC-06 7 107746388 107746388 G A LAMB4 Silent p.S248S 0.25 TCGA-D3-A8GC-06 7 111377015 111377015 C T DOCK4 Missense_Mutation p.A1746T 0.47 tolerated(0.33) benign(0.003) TCGA-D3-A8GC-06 7 111575683 111575683 C T DOCK4 Missense_Mutation p.M326I 0.43 tolerated(0.08) benign(0.007) TCGA-D3-A8GC-06 7 112108084 112108084 T C IFRD1 Silent p.L319L 0.34 TCGA-D3-A8GC-06 7 113519163 113519163 G A PPP1R3A Nonsense_Mutation p.Q662* 0.46 TCGA-D3-A8GC-06 7 115581000 115581000 G A TFEC Intron 0.34 TCGA-D3-A8GC-06 7 116397586 116397586 C T MET Missense_Mutation p.S653F 0.47 tolerated(0.16) probably_damaging(0.998) TCGA-D3-A8GC-06 7 123296075 123296075 G A LMOD2 Missense_Mutation p.E20K 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GC-06 7 126079100 126079100 G A GRM8 3'UTR 0.33 TCGA-D3-A8GC-06 7 126086133 126086133 G A GRM8 Intron 0.41 TCGA-D3-A8GC-06 7 126173440 126173440 G A GRM8 Missense_Mutation p.L666F 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 7 130137993 130137993 A G MEST Missense_Mutation p.Y118C 0.41 deleterious(0.03) possibly_damaging(0.798) TCGA-D3-A8GC-06 7 141427278 141427278 G A WEE2 Intron 0.47 TCGA-D3-A8GC-06 7 141955432 141955432 C T PRSS58 Silent p.L34L 0.38 TCGA-D3-A8GC-06 7 142231754 142231754 G A TRBV10-1 Nonsense_Mutation p.R55* 0.45 TCGA-D3-A8GC-06 7 142378870 142378870 G A MTRNR2L6 3'Flank 0.46 TCGA-D3-A8GC-06 7 143632755 143632755 T C OR2F2 Silent p.L144L 0.39 TCGA-D3-A8GC-06 7 143657596 143657596 C T OR2F1 Missense_Mutation p.S178F 0.44 tolerated(1) benign(0.049) TCGA-D3-A8GC-06 7 143701377 143701377 C T OR6B1 Silent p.L96L 0.33 TCGA-D3-A8GC-06 7 143884126 143884126 G A ARHGEF35 Missense_Mutation p.P451S 0.42 tolerated(0.18) possibly_damaging(0.51) TCGA-D3-A8GC-06 7 143929646 143929646 C T OR2A42 Missense_Mutation p.M97I 0.51 tolerated(1) benign(0) TCGA-D3-A8GC-06 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.42 tolerated(1) benign(0.006) TCGA-D3-A8GC-06 7 14733733 14733733 C T DGKB Silent p.T226T 0.37 TCGA-D3-A8GC-06 7 150164104 150164104 C T GIMAP8 Silent p.F106F 0.36 TCGA-D3-A8GC-06 7 150325079 150325079 C T GIMAP6 Missense_Mutation p.A203T 0.39 deleterious(0.03) possibly_damaging(0.677) TCGA-D3-A8GC-06 7 150418021 150418021 G A GIMAP1 3'UTR 0.50 TCGA-D3-A8GC-06 7 150555051 150555051 G A AOC1 Missense_Mutation p.G498D 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 7 150558330 150558330 G A AOC1 3'UTR 0.56 TCGA-D3-A8GC-06 7 150558331 150558331 G A AOC1 3'UTR 0.56 TCGA-D3-A8GC-06 7 150654535 150654535 G A KCNH2 Silent p.L324L 0.45 TCGA-D3-A8GC-06 7 151478393 151478411 GTTTTGGGAGAGCCGGGGC - PRKAG2 Frame_Shift_Del p.S98Tfs*18 0.40 TCGA-D3-A8GC-06 7 154684535 154684535 C T DPP6 3'UTR 0.42 TCGA-D3-A8GC-06 7 154876126 154876126 C T HTR5A Missense_Mutation p.P335S 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GC-06 7 158536305 158536305 G A ESYT2 Missense_Mutation p.T597I 0.39 tolerated(0.13) benign(0.037) TCGA-D3-A8GC-06 7 16505098 16505098 C T SOSTDC1 Missense_Mutation p.D66N 0.46 tolerated(0.15) possibly_damaging(0.575) TCGA-D3-A8GC-06 7 18706061 18706061 G A HDAC9 Missense_Mutation p.E565K 0.31 tolerated(0.18) benign(0.012) TCGA-D3-A8GC-06 7 20698297 20698297 A C ABCB5 Missense_Mutation p.K569Q 0.46 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A8GC-06 7 20795071 20795071 A G ABCB5 Missense_Mutation p.K1200E 0.49 tolerated(0.24) benign(0.002) TCGA-D3-A8GC-06 7 22857645 22857645 G A TOMM7 Silent p.P42P 0.45 TCGA-D3-A8GC-06 7 22857646 22857646 G A TOMM7 Missense_Mutation p.P42L 0.44 deleterious(0) possibly_damaging(0.846) TCGA-D3-A8GC-06 7 23293902 23293902 A G GPNMB Missense_Mutation p.N113S 0.36 deleterious(0.02) benign(0.117) TCGA-D3-A8GC-06 7 25266296 25266296 G A NPVF Missense_Mutation p.S163F 0.48 deleterious(0.03) possibly_damaging(0.657) TCGA-D3-A8GC-06 7 2558226 2558226 G A LFNG 5'Flank 0.50 TCGA-D3-A8GC-06 7 27147575 27147575 G A HOXA3 Nonsense_Mutation p.Q431* 0.46 TCGA-D3-A8GC-06 7 32591016 32591016 C T AVL9 Missense_Mutation p.S148F 0.39 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GC-06 7 34888153 34888153 C T NPSR1 Silent p.L301L 0.42 TCGA-D3-A8GC-06 7 37780122 37780122 G A GPR141 Missense_Mutation p.V43M 0.40 tolerated(0.12) benign(0.068) TCGA-D3-A8GC-06 7 39247035 39247035 G A POU6F2 Silent p.V109V 0.38 TCGA-D3-A8GC-06 7 43590055 43590055 G A HECW1 Silent p.R1420R 0.47 TCGA-D3-A8GC-06 7 43906529 43906529 G A MRPS24 Silent p.F91F 0.22 TCGA-D3-A8GC-06 7 44797512 44797512 C T ZMIZ2 Silent p.V206V 0.29 TCGA-D3-A8GC-06 7 44797513 44797513 C T ZMIZ2 Missense_Mutation p.P207S 0.29 tolerated(0.1) benign(0.146) TCGA-D3-A8GC-06 7 47970717 47970717 G A PKD1L1 Missense_Mutation p.P241S 0.32 tolerated_low_confidence(0.68) benign(0.001) TCGA-D3-A8GC-06 7 48550757 48550757 G A ABCA13 Silent p.K4534K 0.53 TCGA-D3-A8GC-06 7 53103871 53103871 C T POM121L12 Silent p.L169L 0.29 TCGA-D3-A8GC-06 7 5521209 5521209 C T FBXL18 3'UTR 0.62 TCGA-D3-A8GC-06 7 55227873 55227873 C T EGFR Missense_Mutation p.S447F 0.41 tolerated(0.24) benign(0.257) TCGA-D3-A8GC-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.45 TCGA-D3-A8GC-06 7 62752515 62752515 C T ZNF733P RNA 0.30 TCGA-D3-A8GC-06 7 63538679 63538679 C T ZNF727 Missense_Mutation p.H418Y 0.46 deleterious(0.03) possibly_damaging(0.844) TCGA-D3-A8GC-06 7 64437545 64437545 T C ZNF117 3'UTR 0.30 TCGA-D3-A8GC-06 7 76111886 76111886 C T DTX2 Silent p.V110V 0.50 TCGA-D3-A8GC-06 7 77423479 77423479 G A TMEM60 Missense_Mutation p.S71L 0.41 tolerated(0.14) benign(0.011) TCGA-D3-A8GC-06 7 79842145 79842145 C T GNAI1 Silent p.I278I 0.35 TCGA-D3-A8GC-06 7 82453716 82453716 G A PCLO Missense_Mutation p.S4811F 0.37 unknown(0) TCGA-D3-A8GC-06 7 82764921 82764921 C T PCLO Missense_Mutation p.D649N 0.67 unknown(0) TCGA-D3-A8GC-06 7 82784491 82784491 G A PCLO Missense_Mutation p.P489L 0.37 possibly_damaging(0.851) TCGA-D3-A8GC-06 7 899805 899805 C T SUN1 Missense_Mutation p.S522F 0.39 tolerated(0.18) possibly_damaging(0.795) TCGA-D3-A8GC-06 7 92848837 92848837 G A HEPACAM2 Intron 0.54 TCGA-D3-A8GC-06 7 92855776 92855776 T G HEPACAM2 5'UTR 0.36 TCGA-D3-A8GC-06 7 94043556 94043556 C T COL1A2 Missense_Mutation p.P563L 0.43 unknown(0) TCGA-D3-A8GC-06 7 99123728 99123728 C T ZKSCAN5 Silent p.F355F 0.44 TCGA-D3-A8GC-06 7 99306756 99306756 C T CYP3A7 Silent p.G385G 0.53 TCGA-D3-A8GC-06 7 99306757 99306757 C T CYP3A7 Missense_Mutation p.G385E 0.52 deleterious(0.01) probably_damaging(0.927) TCGA-D3-A8GC-06 7 99655334 99655334 C T ZSCAN21 Missense_Mutation p.P138L 0.39 tolerated(0.1) benign(0.086) TCGA-D3-A8GC-06 7 99704122 99704122 C T AP4M1 Silent p.L374L 0.41 TCGA-D3-A8GC-06 8 102555537 102555537 C G GRHL2 Missense_Mutation p.T30S 0.30 tolerated(0.17) benign(0.348) TCGA-D3-A8GC-06 8 104342114 104342114 C T FZD6 Silent p.T591T 0.44 TCGA-D3-A8GC-06 8 10465884 10465884 G C RP1L1 Silent p.A1908A 0.25 TCGA-D3-A8GC-06 8 10555345 10555345 G A C8orf74 Missense_Mutation p.D160N 0.24 tolerated(0.07) benign(0.068) TCGA-D3-A8GC-06 8 110457608 110457608 C T PKHD1L1 Missense_Mutation p.S1837L 0.33 tolerated(0.22) benign(0.031) TCGA-D3-A8GC-06 8 110493784 110493784 G A PKHD1L1 Silent p.K3150K 0.30 TCGA-D3-A8GC-06 8 113266540 113266540 G A CSMD3 Missense_Mutation p.S3351F 0.41 deleterious(0.01) benign(0.025) TCGA-D3-A8GC-06 8 113585863 113585863 C T CSMD3 Silent p.T1303T 0.40 TCGA-D3-A8GC-06 8 113651026 113651026 G A CSMD3 Missense_Mutation p.P1142L 0.24 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GC-06 8 113651027 113651027 G A CSMD3 Missense_Mutation p.P1142S 0.24 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GC-06 8 119209820 119209820 C T SAMD12 3'UTR 0.56 TCGA-D3-A8GC-06 8 121256208 121256208 G A COL14A1 Missense_Mutation p.D814N 0.48 deleterious(0.03) benign(0.019) TCGA-D3-A8GC-06 8 123964404 123964404 G A ZHX2 Silent p.L218L 0.32 TCGA-D3-A8GC-06 8 124117583 124117583 C T TBC1D31 Missense_Mutation p.S363F 0.59 tolerated(0.06) benign(0.008) TCGA-D3-A8GC-06 8 124117584 124117584 C G TBC1D31 Silent p.S363S 0.61 TCGA-D3-A8GC-06 8 124989728 124989728 C T FER1L6 Silent p.F314F 0.53 TCGA-D3-A8GC-06 8 125047563 125047563 G A FER1L6 Missense_Mutation p.D778N 0.46 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GC-06 8 133142200 133142200 T G KCNQ3 Missense_Mutation p.H643P 0.59 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 8 133142201 133142201 G T KCNQ3 Missense_Mutation p.H643N 0.59 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 8 134233065 134233065 C T WISP1 Silent p.P197P 0.30 TCGA-D3-A8GC-06 8 134233066 134233066 C T WISP1 Missense_Mutation p.R198C 0.30 deleterious(0) benign(0.038) TCGA-D3-A8GC-06 8 139164234 139164234 G A FAM135B Silent p.P828P 0.40 TCGA-D3-A8GC-06 8 139636000 139636000 C T COL22A1 Missense_Mutation p.G1249E 0.57 unknown(0) TCGA-D3-A8GC-06 8 143599561 143599561 C T BAI1 Silent p.L960L 0.58 TCGA-D3-A8GC-06 8 144732358 144732358 C T ZNF623 Silent p.L106L 0.39 TCGA-D3-A8GC-06 8 144940264 144940264 G A EPPK1 Silent p.F2386F 0.05 TCGA-D3-A8GC-06 8 145736416 145736416 A T MFSD3 Nonsense_Mutation p.K370* 0.36 TCGA-D3-A8GC-06 8 15977974 15977974 C T MSR1 Missense_Mutation p.G392E 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 8 16026302 16026302 C T MSR1 Missense_Mutation p.G99R 0.53 deleterious(0.02) probably_damaging(0.962) TCGA-D3-A8GC-06 8 21984693 21984693 C T HR Missense_Mutation p.G421E 0.68 tolerated(0.14) benign(0.12) TCGA-D3-A8GC-06 8 22884670 22884670 G A TNFRSF10B Silent p.S304S 0.58 TCGA-D3-A8GC-06 8 22884671 22884671 G A TNFRSF10B Missense_Mutation p.S304F 0.56 deleterious(0) possibly_damaging(0.762) TCGA-D3-A8GC-06 8 24249826 24249826 C T ADAMDEC1 Missense_Mutation p.P47L 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GC-06 8 25898490 25898490 C T EBF2 Missense_Mutation p.G106D 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 8 26237948 26237949 - A BNIP3L 5'Flank 0.36 TCGA-D3-A8GC-06 8 27288464 27288464 C T PTK2B Silent p.V247V 0.53 TCGA-D3-A8GC-06 8 27320934 27320934 G A CHRNA2 Silent p.S342S 0.21 TCGA-D3-A8GC-06 8 2808778 2808778 G A CSMD1 Silent p.F3353F 0.29 TCGA-D3-A8GC-06 8 28209045 28209045 G A ZNF395 Silent p.S400S 0.17 TCGA-D3-A8GC-06 8 2832009 2832009 C T CSMD1 Missense_Mutation p.D2902N 0.68 benign(0.007) TCGA-D3-A8GC-06 8 30915895 30915895 T A WRN 5'UTR 0.67 TCGA-D3-A8GC-06 8 39131844 39131844 G T ADAM32 Missense_Mutation p.G739C 0.56 deleterious_low_confidence(0.01) benign(0.378) TCGA-D3-A8GC-06 8 39564376 39564376 T G ADAM18 Missense_Mutation p.F657C 0.26 tolerated(0.18) benign(0.346) TCGA-D3-A8GC-06 8 41555582 41555582 G A ANK1 Silent p.I913I 0.50 TCGA-D3-A8GC-06 8 42286354 42286354 G A SLC20A2 Silent p.F572F 0.25 TCGA-D3-A8GC-06 8 42563939 42563939 C T CHRNB3 Silent p.V44V 0.56 TCGA-D3-A8GC-06 8 55534005 55534005 G A RP1 Missense_Mutation p.R160K 0.37 tolerated(1) benign(0.009) TCGA-D3-A8GC-06 8 57228651 57228651 C T SDR16C5 Missense_Mutation p.E86K 0.53 tolerated(0.2) benign(0.054) TCGA-D3-A8GC-06 8 66989033 66989033 G A DNAJC5B Silent p.L86L 0.36 TCGA-D3-A8GC-06 8 69434127 69434127 G A C8orf34 Missense_Mutation p.E287K 0.58 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GC-06 8 73982130 73982130 C T SBSPON Missense_Mutation p.R196Q 0.56 tolerated(0.06) benign(0.408) TCGA-D3-A8GC-06 8 77617345 77617345 C T ZFHX4 Missense_Mutation p.S341F 0.29 possibly_damaging(0.683) TCGA-D3-A8GC-06 8 77766769 77766769 A T ZFHX4 Missense_Mutation p.M2538L 0.43 possibly_damaging(0.65) TCGA-D3-A8GC-06 8 77767898 77767898 G A ZFHX4 Missense_Mutation p.G2914E 0.64 probably_damaging(0.999) TCGA-D3-A8GC-06 8 77767909 77767909 C T ZFHX4 Missense_Mutation p.P2918S 0.16 possibly_damaging(0.889) TCGA-D3-A8GC-06 8 85441711 85441711 C T RALYL Missense_Mutation p.S65F 0.59 deleterious(0.03) possibly_damaging(0.799) TCGA-D3-A8GC-06 8 86573807 86573807 G A REXO1L1P Silent p.S640S 0.11 TCGA-D3-A8GC-06 8 95174334 95174334 G A CDH17 Missense_Mutation p.P447S 0.42 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GC-06 9 104238636 104238636 G A TMEM246 Missense_Mutation p.H247Y 0.87 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GC-06 9 111616995 111616995 G A ACTL7B Missense_Mutation p.R406W 0.88 tolerated(0.19) probably_damaging(1) TCGA-D3-A8GC-06 9 117085966 117085966 C T ORM1 Silent p.I46I 0.43 TCGA-D3-A8GC-06 9 120474666 120474666 G T TLR4 Splice_Site p.X87_splice 0.96 TCGA-D3-A8GC-06 9 124988654 124988654 C T LHX6 Splice_Site p.X154_splice 0.89 TCGA-D3-A8GC-06 9 125377922 125377922 G A OR1Q1 Missense_Mutation p.M302I 0.83 tolerated(0.1) benign(0.043) TCGA-D3-A8GC-06 9 129851352 129851352 C T ANGPTL2 Missense_Mutation p.G450R 0.90 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 9 134050949 134050949 C T NUP214 Missense_Mutation p.S1087L 0.80 possibly_damaging(0.503) TCGA-D3-A8GC-06 9 134349904 134349904 C T PRRC2B Silent p.L796L 0.86 TCGA-D3-A8GC-06 9 135975595 135975595 G A RALGDS Intron 0.91 TCGA-D3-A8GC-06 9 136227275 136227275 A C SURF2 Missense_Mutation p.T218P 0.75 benign(0.044) TCGA-D3-A8GC-06 9 136227277 136227277 C T SURF2 Silent p.T218T 0.75 TCGA-D3-A8GC-06 9 136529047 136529047 G A SARDH Silent p.F907F 0.88 TCGA-D3-A8GC-06 9 137622286 137622286 C T COL5A1 Missense_Mutation p.P377S 0.80 probably_damaging(0.998) TCGA-D3-A8GC-06 9 137716649 137716649 C T COL5A1 Silent p.N1634N 0.86 TCGA-D3-A8GC-06 9 137716650 137716650 C T COL5A1 Missense_Mutation p.P1635S 0.82 unknown(0) TCGA-D3-A8GC-06 9 139342057 139342057 G A SEC16A Missense_Mutation p.P2175S 0.85 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GC-06 9 14804977 14804977 C T FREM1 Missense_Mutation p.D1150N 0.95 tolerated(0.11) benign(0.04) TCGA-D3-A8GC-06 9 14804989 14804989 C T FREM1 Missense_Mutation p.D1146N 0.98 deleterious(0) probably_damaging(1) TCGA-D3-A8GC-06 9 14845976 14845976 C T FREM1 Missense_Mutation p.G459R 0.65 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GC-06 9 15777786 15777786 G C CCDC171 Missense_Mutation p.A954P 0.95 deleterious(0.01) probably_damaging(0.916) TCGA-D3-A8GC-06 9 21187346 21187346 G A IFNA4 Missense_Mutation p.P62L 0.88 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GC-06 9 23701575 23701575 C T ELAVL2 Missense_Mutation p.R172Q 0.91 deleterious(0.04) possibly_damaging(0.833) TCGA-D3-A8GC-06 9 3288166 3288166 C T RFX3 Missense_Mutation p.M272I 0.89 deleterious(0.05) benign(0.075) TCGA-D3-A8GC-06 9 71628847 71628847 G A PRKACG Silent p.S54S 0.86 TCGA-D3-A8GC-06 9 77403638 77403638 G A TRPM6 Silent p.L853L 0.83 TCGA-D3-A8GC-06 9 77411734 77411734 G A TRPM6 Missense_Mutation p.P772S 0.97 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GC-06 9 84531721 84531721 C A SPATA31D5P RNA 0.93 TCGA-D3-A8GC-06 9 96080167 96080167 G A WNK2 Missense_Mutation p.G2251E 0.86 unknown(0) TCGA-D3-A8GC-06 X 100276214 100276214 G A TRMT2B Silent p.I314I 0.91 TCGA-D3-A8GC-06 X 102339288 102339288 C T NXF3 Silent p.G111G 0.89 TCGA-D3-A8GC-06 X 105450176 105450176 C T MUM1L1 Missense_Mutation p.P251S 0.78 tolerated(0.12) benign(0.067) TCGA-D3-A8GC-06 X 106331834 106331834 C T RBM41 Silent p.V253V 0.88 TCGA-D3-A8GC-06 X 107834856 107834856 G A COL4A5 Missense_Mutation p.G469R 0.88 unknown(0) TCGA-D3-A8GC-06 X 108785885 108785885 T A NXT2 Missense_Mutation p.C188S 0.90 deleterious(0.05) probably_damaging(0.988) TCGA-D3-A8GC-06 X 118540591 118540591 C T SLC25A43 Silent p.L148L 0.93 TCGA-D3-A8GC-06 X 12516837 12516837 G A FRMPD4 Missense_Mutation p.G27E 0.92 tolerated(0.15) possibly_damaging(0.697) TCGA-D3-A8GC-06 X 130407883 130407883 C T IGSF1 Missense_Mutation p.D1305N 0.85 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 X 130415774 130415774 G A IGSF1 Missense_Mutation p.S464L 0.84 tolerated(0.12) benign(0.011) TCGA-D3-A8GC-06 X 135790851 135790851 G A ARHGEF6 Silent p.A302A 0.84 TCGA-D3-A8GC-06 X 140984958 140984958 C T MAGEC3 Nonsense_Mutation p.Q472* 0.86 TCGA-D3-A8GC-06 X 149639278 149639278 C T MAMLD1 Missense_Mutation p.S453F 0.86 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GC-06 X 151303687 151303687 C T MAGEA10 Missense_Mutation p.E136K 0.90 tolerated(1) benign(0.031) TCGA-D3-A8GC-06 X 151358250 151358250 C T GABRA3 Silent p.R365R 0.89 TCGA-D3-A8GC-06 X 151900743 151900743 C T MAGEA12 Missense_Mutation p.G20R 0.85 tolerated(0.78) possibly_damaging(0.589) TCGA-D3-A8GC-06 X 152159166 152159166 C T PNMA5 Missense_Mutation p.R326Q 0.87 tolerated(0.08) possibly_damaging(0.79) TCGA-D3-A8GC-06 X 155239559 155239559 T C IL9R Missense_Mutation p.C351R 0.09 tolerated(0.47) benign(0.002) TCGA-D3-A8GC-06 X 19371197 19371197 C T PDHA1 Intron 0.97 TCGA-D3-A8GC-06 X 3229289 3229289 C T MXRA5 Missense_Mutation p.E2319K 0.95 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GC-06 X 41091696 41091696 C T USP9X Silent p.N2544N 0.80 TCGA-D3-A8GC-06 X 41333716 41333716 C T NYX Missense_Mutation p.P337L 0.89 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GC-06 X 47920247 47920247 G C ZNF630 Silent p.T31T 0.83 TCGA-D3-A8GC-06 X 48118065 48118065 G A SSX1 Silent p.Q93Q 0.87 TCGA-D3-A8GC-06 X 48457059 48457059 C T WDR13 Intron 0.88 TCGA-D3-A8GC-06 X 50378306 50378306 G A SHROOM4 Missense_Mutation p.S256F 0.88 tolerated(0.06) benign(0.006) TCGA-D3-A8GC-06 X 54785340 54785340 G A ITIH6 Silent p.I389I 0.70 TCGA-D3-A8GC-06 X 68382158 68382158 C T PJA1 Silent p.G308G 0.79 TCGA-D3-A8GC-06 X 69890262 69890262 C T TEX11 Missense_Mutation p.A464T 0.91 tolerated(0.08) probably_damaging(0.922) TCGA-D3-A8GC-06 X 73960183 73960183 C T KIAA2022 Silent p.G1403G 0.91 TCGA-D3-A8GC-06 X 73964156 73964156 G A KIAA2022 Missense_Mutation p.S79F 0.81 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GC-06 X 73964287 73964287 C T KIAA2022 Missense_Mutation p.M35I 0.81 tolerated_low_confidence(0.27) benign(0.001) TCGA-D3-A8GC-06 X 76812952 76812952 C T ATRX Silent p.K2223K 0.83 TCGA-D3-A8GC-06 X 83128420 83128420 C T CYLC1 Missense_Mutation p.S235L 0.88 tolerated(0.15) possibly_damaging(0.504) TCGA-D3-A8GC-06 X 91132295 91132295 C T PCDH11X Silent p.V352V 0.70 TCGA-D3-A8GC-06 X 96213058 96213058 C T DIAPH2 Missense_Mutation p.P616S 0.93 tolerated(0.06) unknown(0) TCGA-D3-A8GC-06 X 9862681 9862681 C T SHROOM2 Missense_Mutation p.P245S 0.82 tolerated(1) benign(0) TCGA-D3-A8GD-06 10 104660505 104660505 A T AS3MT 3'UTR 0.35 TCGA-D3-A8GD-06 10 115987797 115987797 G T TDRD1 Missense_Mutation p.V1151F 0.12 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GD-06 10 3185690 3185690 G A PITRM1 Missense_Mutation p.P847S 0.23 tolerated(0.08) benign(0.088) TCGA-D3-A8GD-06 10 3189824 3189824 C A PITRM1 Missense_Mutation p.R726S 0.28 tolerated(0.48) possibly_damaging(0.585) TCGA-D3-A8GD-06 10 37506687 37506687 G A ANKRD30A Missense_Mutation p.E994K 0.47 tolerated(0.06) possibly_damaging(0.636) TCGA-D3-A8GD-06 10 46999767 46999767 T A GPRIN2 Missense_Mutation p.L296H 0.08 tolerated(0.26) possibly_damaging(0.518) TCGA-D3-A8GD-06 10 89717744 89717744 T C PTEN Missense_Mutation p.F257L 0.39 tolerated(0.2) benign(0.123) TCGA-D3-A8GD-06 11 101828996 101828996 G A KIAA1377 Missense_Mutation p.E202K 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A8GD-06 11 120776186 120776186 G A GRIK4 Missense_Mutation p.G487E 0.17 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GD-06 11 36596754 36596754 A G RAG1 Missense_Mutation p.I634V 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GD-06 11 46637287 46637287 G C HARBI1 Missense_Mutation p.N167K 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GD-06 11 65395005 65395005 C A PCNXL3 Silent p.S1218S 0.18 TCGA-D3-A8GD-06 11 66360363 66360363 C T CCDC87 Missense_Mutation p.G42S 0.32 tolerated(0.71) benign(0.016) TCGA-D3-A8GD-06 12 108147857 108147857 G A PRDM4 Missense_Mutation p.P59S 0.11 deleterious_low_confidence(0.01) benign(0.172) TCGA-D3-A8GD-06 12 57850638 57850638 G A INHBE 3'UTR 0.09 TCGA-D3-A8GD-06 12 91449293 91449293 A C KERA Missense_Mutation p.S256A 0.12 tolerated(0.18) benign(0.001) TCGA-D3-A8GD-06 12 97137856 97137856 C T C12orf55 Missense_Mutation p.P2539L 0.15 tolerated(1) benign(0.001) TCGA-D3-A8GD-06 13 25026685 25026685 C T PARP4 Missense_Mutation p.R958Q 0.11 deleterious(0.05) possibly_damaging(0.49) TCGA-D3-A8GD-06 13 84454388 84454388 A C SLITRK1 Missense_Mutation p.F419V 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GD-06 13 88328682 88328682 C T SLITRK5 Missense_Mutation p.R347W 0.20 deleterious(0) possibly_damaging(0.881) TCGA-D3-A8GD-06 14 105614753 105614753 G A JAG2 Missense_Mutation p.P682S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GD-06 14 106791099 106791099 C T IGHV3-30 Missense_Mutation p.R86Q 0.11 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-D3-A8GD-06 15 102462570 102462570 G A OR4F4 Silent p.S231S 0.47 TCGA-D3-A8GD-06 15 38243511 38243511 G A TMCO5A 3'UTR 0.10 TCGA-D3-A8GD-06 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.23 TCGA-D3-A8GD-06 15 49088206 49088206 C G CEP152 Splice_Site p.X231_splice 0.06 TCGA-D3-A8GD-06 15 65157793 65157793 C T PLEKHO2 Silent p.D393D 0.48 TCGA-D3-A8GD-06 16 24576175 24576175 G A RBBP6 Silent p.R526R 0.27 TCGA-D3-A8GD-06 16 2871558 2871558 A T PRSS21 Silent p.L299L 0.18 TCGA-D3-A8GD-06 16 630905 630905 G A PIGQ Silent p.V488V 0.21 TCGA-D3-A8GD-06 16 68071946 68071946 C T DUS2 Missense_Mutation p.S7F 0.15 deleterious(0.03) possibly_damaging(0.707) TCGA-D3-A8GD-06 16 81888074 81888074 C A PLCG2 Silent p.I73I 0.31 TCGA-D3-A8GD-06 17 10317261 10317261 G A MYH8 Nonsense_Mutation p.Q369* 0.19 TCGA-D3-A8GD-06 17 40343111 40343111 G C GHDC Missense_Mutation p.S336C 0.07 tolerated(0.06) benign(0.033) TCGA-D3-A8GD-06 17 48598529 48598529 G A MYCBPAP Silent p.L368L 0.14 TCGA-D3-A8GD-06 17 5064861 5064861 G A USP6 Missense_Mutation p.R956Q 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-D3-A8GD-06 17 5064862 5064862 A G USP6 Silent p.R956R 0.11 TCGA-D3-A8GD-06 17 55184320 55184320 C T AKAP1 Missense_Mutation p.P499S 0.09 tolerated(0.83) benign(0.009) TCGA-D3-A8GD-06 17 78360623 78360623 G A RNF213 Missense_Mutation p.D4952N 0.29 probably_damaging(1) TCGA-D3-A8GD-06 17 79943387 79943387 G A ASPSCR1 Missense_Mutation p.R93H 0.15 deleterious(0) unknown(0) TCGA-D3-A8GD-06 18 24496265 24496265 G A CHST9 Silent p.Y430Y 0.23 TCGA-D3-A8GD-06 18 59157725 59157725 G A CDH20 5'UTR 0.29 TCGA-D3-A8GD-06 18 61160224 61160224 G A SERPINB5 Missense_Mutation p.D155N 0.27 tolerated(0.21) benign(0.267) TCGA-D3-A8GD-06 19 15806861 15806861 G A CYP4F12 Missense_Mutation p.G411S 0.07 deleterious(0.01) probably_damaging(0.922) TCGA-D3-A8GD-06 19 24310586 24310586 T C ZNF254 Missense_Mutation p.I595T 0.12 deleterious(0.02) possibly_damaging(0.612) TCGA-D3-A8GD-06 19 44057650 44057650 G C XRCC1 Silent p.T168T 0.10 TCGA-D3-A8GD-06 19 44611304 44611304 C G ZNF224 Missense_Mutation p.L331V 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A8GD-06 19 9968497 9968497 C T OLFM2 Missense_Mutation p.R85Q 0.15 tolerated(0.1) possibly_damaging(0.906) TCGA-D3-A8GD-06 1 117633221 117633221 A G TTF2 Missense_Mutation p.Y855C 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GD-06 1 120437972 120437972 G C ADAM30 Missense_Mutation p.L330V 0.07 tolerated(0.05) possibly_damaging(0.759) TCGA-D3-A8GD-06 1 144857711 144857711 G A PDE4DIP Missense_Mutation p.P2115S 0.08 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GD-06 1 152777709 152777709 G A LCE1C Silent p.R82R 0.13 TCGA-D3-A8GD-06 1 161479716 161479716 C G FCGR2A Missense_Mutation p.F157L 0.09 deleterious(0.02) possibly_damaging(0.85) TCGA-D3-A8GD-06 1 167343527 167343527 C T POU2F1 Silent p.I195I 0.21 TCGA-D3-A8GD-06 1 169923151 169923153 CCT TC KIFAP3 Splice_Site p.X758_splice 0.16 TCGA-D3-A8GD-06 1 179339176 179339176 C T AXDND1 Silent p.L113L 0.13 TCGA-D3-A8GD-06 1 185878611 185878611 C T HMCN1 Missense_Mutation p.S255F 0.12 probably_damaging(0.962) TCGA-D3-A8GD-06 1 201869397 201869397 C T LMOD1 Missense_Mutation p.M248I 0.19 benign(0) TCGA-D3-A8GD-06 1 205053376 205053376 T C TMEM81 Missense_Mutation p.T25A 0.16 tolerated(0.51) benign(0.025) TCGA-D3-A8GD-06 1 216420061 216420061 T C USH2A Missense_Mutation p.D892G 0.19 benign(0.002) TCGA-D3-A8GD-06 1 220835378 220835378 T A MARK1 Missense_Mutation p.V753E 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GD-06 1 248344031 248344031 G T OR2M2 Silent p.V248V 0.22 TCGA-D3-A8GD-06 1 27426989 27426989 C T SLC9A1 Missense_Mutation p.E753K 0.25 tolerated(0.41) benign(0.001) TCGA-D3-A8GD-06 1 40149663 40149663 G A HPCAL4 Silent p.Y108Y 0.18 TCGA-D3-A8GD-06 1 94012458 94012458 G A FNBP1L Missense_Mutation p.G445E 0.16 tolerated(0.06) benign(0.048) TCGA-D3-A8GD-06 1 9775984 9775984 G A PIK3CD Missense_Mutation p.A150T 0.45 tolerated(0.52) benign(0.001) TCGA-D3-A8GD-06 20 10603450 10603450 A G SLX4IP Missense_Mutation p.E217G 0.23 deleterious(0) benign(0.23) TCGA-D3-A8GD-06 20 3212128 3212128 G A SLC4A11 Missense_Mutation p.R309C 0.22 deleterious(0) probably_damaging(0.912) TCGA-D3-A8GD-06 20 34541765 34541765 C T SCAND1 Missense_Mutation p.V148M 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GD-06 20 36793601 36793601 G A TGM2 5'UTR 0.18 TCGA-D3-A8GD-06 20 36793602 36793602 G A TGM2 5'UTR 0.19 TCGA-D3-A8GD-06 21 17183530 17183530 G T USP25 Splice_Site p.X311_splice 0.05 TCGA-D3-A8GD-06 22 26688857 26688857 C T SEZ6L Missense_Mutation p.P194S 0.35 deleterious(0.01) possibly_damaging(0.698) TCGA-D3-A8GD-06 2 18745214 18745214 C T NT5C1B Missense_Mutation p.E561K 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GD-06 2 189448991 189448991 G A GULP1 Splice_Site p.X204_splice 0.13 TCGA-D3-A8GD-06 2 189943797 189943797 C T COL5A2 Missense_Mutation p.G333S 0.26 probably_damaging(0.995) TCGA-D3-A8GD-06 2 189975065 189975065 G A COL5A2 Missense_Mutation p.L70F 0.19 probably_damaging(0.996) TCGA-D3-A8GD-06 2 218759760 218759760 C T TNS1 Missense_Mutation p.R63Q 0.15 tolerated(0.13) benign(0.02) TCGA-D3-A8GD-06 2 238244948 238244948 G A COL6A3 Missense_Mutation p.P2932L 0.09 unknown(0) TCGA-D3-A8GD-06 3 13381790 13381790 G A NUP210 Silent p.P1079P 0.11 TCGA-D3-A8GD-06 3 13420426 13420426 T C NUP210 Missense_Mutation p.E344G 0.26 deleterious(0.01) possibly_damaging(0.489) TCGA-D3-A8GD-06 3 38927714 38927714 G A SCN11A Nonsense_Mutation p.Q951* 0.26 TCGA-D3-A8GD-06 3 97868593 97868593 C T OR5H14 Missense_Mutation p.R122C 0.22 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GD-06 4 114274228 114274228 C T ANK2 Missense_Mutation p.S1485F 0.14 possibly_damaging(0.666) TCGA-D3-A8GD-06 4 114286198 114286198 C T ANK2 Missense_Mutation p.T3631I 0.09 benign(0.168) TCGA-D3-A8GD-06 4 8230025 8230025 G A SH3TC1 Missense_Mutation p.M868I 0.18 deleterious(0.02) benign(0.023) TCGA-D3-A8GD-06 4 94547479 94547479 C T GRID2 Silent p.I751I 0.11 TCGA-D3-A8GD-06 5 108168532 108168532 A G FER Missense_Mutation p.E90G 0.32 deleterious(0.02) possibly_damaging(0.814) TCGA-D3-A8GD-06 5 115336875 115336875 G A AQPEP Missense_Mutation p.V587I 0.11 tolerated(0.27) benign(0.002) TCGA-D3-A8GD-06 5 130764655 130764655 T C CTC-432M15.3 Missense_Mutation p.N1624D 0.11 tolerated_low_confidence(0.31) benign(0.028) TCGA-D3-A8GD-06 5 137853258 137853258 G A ETF1 Missense_Mutation p.H132Y 0.22 deleterious(0.04) benign(0.196) TCGA-D3-A8GD-06 5 139947489 139947489 C T SLC35A4 Silent p.L245L 0.12 TCGA-D3-A8GD-06 5 139947490 139947490 C T SLC35A4 Silent p.L246L 0.13 TCGA-D3-A8GD-06 5 140433396 140433396 C T PCDHB1 Missense_Mutation p.P781S 0.11 deleterious(0.05) benign(0.041) TCGA-D3-A8GD-06 5 154278748 154278748 T A GEMIN5 Intron 0.28 TCGA-D3-A8GD-06 5 31297398 31297398 A G CDH6 Missense_Mutation p.T176A 0.15 tolerated(0.05) benign(0.001) TCGA-D3-A8GD-06 5 38406959 38406959 G A EGFLAM Silent p.G286G 0.08 TCGA-D3-A8GD-06 5 50092973 50092973 C T PARP8 Missense_Mutation p.T494I 0.09 tolerated(1) benign(0.002) TCGA-D3-A8GD-06 6 112671610 112671610 G A RFPL4B Missense_Mutation p.G234S 0.16 tolerated(0.41) benign(0.003) TCGA-D3-A8GD-06 6 128134094 128134094 C G THEMIS Missense_Mutation p.E564D 0.12 tolerated(0.38) benign(0.153) TCGA-D3-A8GD-06 6 134349988 134349988 G A SLC2A12 Silent p.V325V 0.13 TCGA-D3-A8GD-06 6 135518403 135518403 T G MYB Missense_Mutation p.V503G 0.09 tolerated(0.35) benign(0.087) TCGA-D3-A8GD-06 6 161157950 161157950 A C PLG Missense_Mutation p.Q571H 0.10 tolerated(0.06) benign(0.146) TCGA-D3-A8GD-06 6 24588842 24588842 G A KIAA0319 Missense_Mutation p.P325S 0.09 tolerated(0.12) possibly_damaging(0.493) TCGA-D3-A8GD-06 6 43305955 43305955 T G ZNF318 Missense_Mutation p.E1927D 0.15 benign(0.022) TCGA-D3-A8GD-06 6 46806773 46806773 T C MEP1A Missense_Mutation p.V714A 0.11 tolerated(0.09) benign(0.317) TCGA-D3-A8GD-06 6 56044714 56044714 G A COL21A1 Missense_Mutation p.T101M 0.18 tolerated(0.1) benign(0.001) TCGA-D3-A8GD-06 6 69666627 69666627 G T BAI3 Missense_Mutation p.G484V 0.15 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GD-06 6 75801103 75801103 T A COL12A1 Silent p.G2896G 0.11 TCGA-D3-A8GD-06 6 75851751 75851751 T C COL12A1 Missense_Mutation p.T1652A 0.19 possibly_damaging(0.566) TCGA-D3-A8GD-06 6 88125509 88125509 T A C6ORF165 Missense_Mutation p.L130H 0.11 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GD-06 7 104800980 104800980 G A SRPK2 Missense_Mutation p.R199C 0.25 deleterious(0) possibly_damaging(0.739) TCGA-D3-A8GD-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GD-06 7 37889885 37889885 G A NME8 Missense_Mutation p.R6Q 0.20 deleterious(0.03) benign(0.36) TCGA-D3-A8GD-06 7 72657807 72657807 C A GTF2IRD2P1 RNA 0.04 TCGA-D3-A8GD-06 7 7412812 7412812 A G COL28A1 Missense_Mutation p.S909P 0.17 tolerated(0.31) benign(0.007) TCGA-D3-A8GD-06 7 92732584 92732584 C T SAMD9 Missense_Mutation p.G943R 0.17 deleterious(0) possibly_damaging(0.85) TCGA-D3-A8GD-06 7 94293632 94293632 G A PEG10 Missense_Mutation p.R255Q 0.47 tolerated(0.39) benign(0.219) TCGA-D3-A8GD-06 8 104831595 104831595 C T RIMS2 Intron 0.22 TCGA-D3-A8GD-06 8 133044180 133044180 C A OC90 Missense_Mutation p.G327C 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GD-06 8 24810245 24810245 C T CTD-2168K21.2 5'Flank 0.19 TCGA-D3-A8GD-06 8 54967635 54967635 C A LYPLA1 Missense_Mutation p.L115F 0.24 deleterious(0.02) possibly_damaging(0.553) TCGA-D3-A8GD-06 8 67809173 67809173 C T MCMDC2 Silent p.F535F 0.23 TCGA-D3-A8GD-06 9 107267091 107267091 C T OR13F1 Missense_Mutation p.A183V 0.33 deleterious(0.03) possibly_damaging(0.832) TCGA-D3-A8GD-06 9 97843008 97843008 G A C9orf3 Silent p.K755K 0.18 TCGA-D3-A8GD-06 X 101909191 101909191 T G GPRASP1 Missense_Mutation p.I117R 0.21 deleterious(0) benign(0.284) TCGA-D3-A8GD-06 X 140993897 140993897 C T MAGEC1 Missense_Mutation p.P236L 0.04 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A8GD-06 X 140994002 140994002 C T MAGEC1 Missense_Mutation p.P271L 0.16 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A8GD-06 X 17819281 17819281 C T RAI2 Missense_Mutation p.E284K 0.07 tolerated(0.13) unknown(0) TCGA-D3-A8GD-06 X 18646617 18646617 C T CDKL5 Missense_Mutation p.R875W 0.11 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-D3-A8GD-06 X 34962509 34962509 G A FAM47B Missense_Mutation p.E521K 0.07 tolerated(1) benign(0.002) TCGA-D3-A8GD-06 X 53458282 53458282 C T HSD17B10 3'UTR 0.38 TCGA-D3-A8GD-06 X 65253413 65253413 C G VSIG4 Missense_Mutation p.M105I 0.06 tolerated(0.27) benign(0.132) TCGA-D3-A8GD-06 X 70147706 70147706 C T SLC7A3 Missense_Mutation p.G329R 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GE-06 13 23908045 23908045 G C SACS Missense_Mutation p.L3324V 0.05 probably_damaging(0.984) TCGA-D3-A8GE-06 15 41021825 41021825 C T RAD51 Missense_Mutation p.A257V 0.05 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GE-06 16 77317932 77317932 T G ADAMTS18 Missense_Mutation p.H1196P 0.06 tolerated(0.19) benign(0.008) TCGA-D3-A8GE-06 19 610333 610333 T C HCN2 Silent p.Y504Y 0.05 TCGA-D3-A8GE-06 1 200972889 200972889 C T KIF21B Missense_Mutation p.C346Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GE-06 1 201973567 201973567 C A RNPEP Silent p.V579V 0.05 TCGA-D3-A8GE-06 6 17800280 17800280 T G KIF13A Missense_Mutation p.E840A 0.05 tolerated(0.21) benign(0.146) TCGA-D3-A8GE-06 8 57079335 57079335 C A PLAG1 Missense_Mutation p.V324F 0.28 tolerated(0.72) probably_damaging(0.954) TCGA-D3-A8GI-06 10 101090494 101090494 C T CNNM1 Silent p.F450F 0.10 TCGA-D3-A8GI-06 10 101637016 101637016 G A DNMBP Silent p.I1542I 0.17 TCGA-D3-A8GI-06 10 102089672 102089672 C T PKD2L1 Silent p.R63R 0.50 TCGA-D3-A8GI-06 10 102824028 102824028 C T KAZALD1 Silent p.I174I 0.17 TCGA-D3-A8GI-06 10 102891355 102891355 C T TLX1 Silent p.F19F 0.48 TCGA-D3-A8GI-06 10 103751756 103751756 G A C10orf76 Missense_Mutation p.P439S 0.56 tolerated(0.21) benign(0.173) TCGA-D3-A8GI-06 10 103988273 103988273 C T ELOVL3 Silent p.S111S 0.46 TCGA-D3-A8GI-06 10 104174666 104174666 C T PSD Missense_Mutation p.E360K 0.54 tolerated(0.06) benign(0.031) TCGA-D3-A8GI-06 10 104262420 104262420 C T ACTR1A 5'UTR 0.23 TCGA-D3-A8GI-06 10 1043164 1043164 C T GTPBP4 Silent p.S159S 0.47 TCGA-D3-A8GI-06 10 104378999 104378999 C T SUFU Intron 0.69 TCGA-D3-A8GI-06 10 104572490 104572490 C T WBP1L Missense_Mutation p.P165L 0.18 tolerated(0.06) benign(0.444) TCGA-D3-A8GI-06 10 105005679 105005679 G A RPEL1 5'UTR 0.56 TCGA-D3-A8GI-06 10 105006373 105006373 G A RPEL1 Missense_Mutation p.R207K 0.59 tolerated(0.93) probably_damaging(0.97) TCGA-D3-A8GI-06 10 105172941 105172941 C T PDCD11 Silent p.F349F 0.52 TCGA-D3-A8GI-06 10 105215442 105215442 C T CALHM1 Silent p.R206R 0.27 TCGA-D3-A8GI-06 10 105386843 105386843 C T SH3PXD2A Intron 0.54 TCGA-D3-A8GI-06 10 105484063 105484063 G A SH3PXD2A Silent p.F121F 0.33 TCGA-D3-A8GI-06 10 105807904 105807904 G A COL17A1 Intron 0.21 TCGA-D3-A8GI-06 10 105928507 105928507 G A WDR96 Missense_Mutation p.L896F 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A8GI-06 10 106019480 106019480 A T GSTO1 Missense_Mutation p.Y97F 0.46 tolerated(0.13) benign(0.286) TCGA-D3-A8GI-06 10 106059161 106059161 G A GSTO2 3'UTR 0.46 TCGA-D3-A8GI-06 10 106059162 106059162 A C GSTO2 3'UTR 0.46 TCGA-D3-A8GI-06 10 106075288 106075288 G A ITPRIP Silent p.A174A 0.56 TCGA-D3-A8GI-06 10 106130722 106130722 C T CCDC147 Missense_Mutation p.H334Y 0.20 deleterious(0.01) benign(0.009) TCGA-D3-A8GI-06 10 106937852 106937852 G A SORCS3 Missense_Mutation p.D644N 0.65 tolerated(0.34) benign(0) TCGA-D3-A8GI-06 10 107012545 107012545 C T SORCS3 Missense_Mutation p.P1040S 0.49 tolerated(0.15) benign(0.013) TCGA-D3-A8GI-06 10 108338873 108338873 C T SORCS1 Missense_Mutation p.E1170K 0.58 tolerated(1) benign(0.016) TCGA-D3-A8GI-06 10 114185198 114185198 C A ACSL5 Missense_Mutation p.Q622K 0.54 tolerated(0.56) benign(0.001) TCGA-D3-A8GI-06 10 114224397 114224397 G A VTI1A Missense_Mutation p.G82E 0.22 tolerated(0.65) benign(0.01) TCGA-D3-A8GI-06 10 114918442 114918442 C T TCF7L2 Intron 0.60 TCGA-D3-A8GI-06 10 115335674 115335674 C T HABP2 Missense_Mutation p.P81L 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 10 115335747 115335747 G A HABP2 Silent p.G105G 0.21 TCGA-D3-A8GI-06 10 115348099 115348099 G A HABP2 Missense_Mutation p.A552T 0.58 tolerated(0.39) benign(0.002) TCGA-D3-A8GI-06 10 115348114 115348114 G A HABP2 Missense_Mutation p.E557K 0.21 tolerated(0.07) benign(0.025) TCGA-D3-A8GI-06 10 115391715 115391715 A T NRAP Nonsense_Mutation p.Y547* 0.19 TCGA-D3-A8GI-06 10 115525003 115525003 C T PLEKHS1 5'UTR 0.56 TCGA-D3-A8GI-06 10 115922996 115922996 G A C10orf118 Missense_Mutation p.S11F 0.57 deleterious_low_confidence(0.02) benign(0.213) TCGA-D3-A8GI-06 10 115980455 115980455 G A TDRD1 Missense_Mutation p.D875N 0.56 tolerated(0.07) benign(0.202) TCGA-D3-A8GI-06 10 116032518 116032518 G A VWA2 Missense_Mutation p.E131K 0.27 deleterious(0) benign(0.001) TCGA-D3-A8GI-06 10 116038565 116038565 C T VWA2 Missense_Mutation p.S263L 0.47 deleterious(0.04) possibly_damaging(0.796) TCGA-D3-A8GI-06 10 116304766 116304766 C T ABLIM1 Missense_Mutation p.E298K 0.62 deleterious(0) possibly_damaging(0.795) TCGA-D3-A8GI-06 10 116304809 116304809 C T ABLIM1 Silent p.V283V 0.13 TCGA-D3-A8GI-06 10 117228820 117228820 C T ATRNL1 Missense_Mutation p.S1212F 0.56 deleterious(0) possibly_damaging(0.83) TCGA-D3-A8GI-06 10 118101596 118101596 G A CCDC172 Missense_Mutation p.E111K 0.21 deleterious(0) possibly_damaging(0.637) TCGA-D3-A8GI-06 10 118187481 118187481 A T PNLIPRP3 5'UTR 0.18 TCGA-D3-A8GI-06 10 118314743 118314743 G A PNLIP Missense_Mutation p.D209N 0.18 deleterious(0.03) probably_damaging(0.965) TCGA-D3-A8GI-06 10 118350533 118350533 C T PNLIPRP1 5'UTR 0.31 TCGA-D3-A8GI-06 10 118424322 118424322 G A C10orf82 Silent p.F137F 0.44 TCGA-D3-A8GI-06 10 118460574 118460574 G A HSPA12A Silent p.P107P 0.53 TCGA-D3-A8GI-06 10 118960693 118960693 C T KCNK18 Missense_Mutation p.L83F 0.54 tolerated(0.08) benign(0.03) TCGA-D3-A8GI-06 10 119013626 119013626 C T SLC18A2 Silent p.S197S 0.19 TCGA-D3-A8GI-06 10 119015133 119015133 C T SLC18A2 Missense_Mutation p.T287M 0.27 deleterious(0.05) benign(0.19) TCGA-D3-A8GI-06 10 120354623 120354623 G A PRLHR Missense_Mutation p.P45L 0.59 tolerated(0.32) benign(0.007) TCGA-D3-A8GI-06 10 12136132 12136132 G - DHTKD1 Frame_Shift_Del p.R407Lfs*17 0.33 TCGA-D3-A8GI-06 10 12162931 12162931 C T DHTKD1 3'UTR 0.44 TCGA-D3-A8GI-06 10 122334804 122334804 C T PPAPDC1A Missense_Mutation p.H203Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 122348895 122348895 G A PPAPDC1A Missense_Mutation p.A233T 0.57 tolerated(0.43) benign(0.003) TCGA-D3-A8GI-06 10 122349055 122349055 C T PPAPDC1A 3'UTR 0.44 TCGA-D3-A8GI-06 10 123239535 123239535 C T FGFR2 Missense_Mutation p.E769K 0.55 deleterious(0) benign(0.186) TCGA-D3-A8GI-06 10 123276928 123276928 C T FGFR2 Intron 0.21 TCGA-D3-A8GI-06 10 123325102 123325102 C T FGFR2 Missense_Mutation p.G76R 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 10 123722753 123722753 G A NSMCE4A Missense_Mutation p.P282S 0.28 deleterious(0.02) possibly_damaging(0.694) TCGA-D3-A8GI-06 10 123842479 123842479 C T TACC2 Missense_Mutation p.P155L 0.60 benign(0.031) TCGA-D3-A8GI-06 10 123954597 123954597 G A TACC2 Silent p.T1959T 0.20 TCGA-D3-A8GI-06 10 123971140 123971140 C T TACC2 Silent p.I2400I 0.66 TCGA-D3-A8GI-06 10 124096135 124096135 G A BTBD16 Missense_Mutation p.E464K 0.73 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A8GI-06 10 124339337 124339337 C T DMBT1 Missense_Mutation p.S308F 0.71 tolerated(0.05) possibly_damaging(0.579) TCGA-D3-A8GI-06 10 124345643 124345643 C T DMBT1 Silent p.V509V 0.68 TCGA-D3-A8GI-06 10 124357521 124357521 G A DMBT1 Silent p.S983S 0.72 TCGA-D3-A8GI-06 10 124377810 124377810 C T DMBT1 Silent p.L1594L 0.12 TCGA-D3-A8GI-06 10 124380624 124380624 G A DMBT1 Missense_Mutation p.R1650Q 0.69 tolerated(1) benign(0.014) TCGA-D3-A8GI-06 10 124392769 124392769 C T DMBT1 Missense_Mutation p.P2025S 0.54 deleterious(0) possibly_damaging(0.85) TCGA-D3-A8GI-06 10 124596927 124596927 C T CUZD1 Missense_Mutation p.E198K 0.16 deleterious(0.01) possibly_damaging(0.639) TCGA-D3-A8GI-06 10 1262923 1262923 C T ADARB2 Silent p.L550L 0.26 TCGA-D3-A8GI-06 10 126715236 126715236 G A CTBP2 Missense_Mutation p.P365S 0.21 tolerated_low_confidence(0.14) benign(0.271) TCGA-D3-A8GI-06 10 127464376 127464376 G A MMP21 Silent p.S5S 0.19 TCGA-D3-A8GI-06 10 127782613 127782613 C T ADAM12 Silent p.R365R 0.69 TCGA-D3-A8GI-06 10 127782630 127782630 G A ADAM12 Missense_Mutation p.H360Y 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 10 128925989 128925989 C G DOCK1 Missense_Mutation p.N915K 0.56 tolerated(0.12) benign(0.002) TCGA-D3-A8GI-06 10 129350730 129350730 G A NPS Missense_Mutation p.G33R 0.19 deleterious(0.03) possibly_damaging(0.9) TCGA-D3-A8GI-06 10 13239678 13239678 C T MCM10 Missense_Mutation p.P678L 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 10 13330492 13330492 G A PHYH Silent p.P182P 0.57 TCGA-D3-A8GI-06 10 13330493 13330493 G A PHYH Missense_Mutation p.P182L 0.57 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GI-06 10 134743270 134743270 G A TTC40 Missense_Mutation p.T302I 0.41 tolerated(0.29) benign(0.016) TCGA-D3-A8GI-06 10 134898490 134898490 G A GPR123 5'Flank 0.22 TCGA-D3-A8GI-06 10 135000054 135000054 C T KNDC1 Missense_Mutation p.P401L 0.15 tolerated(0.22) probably_damaging(0.972) TCGA-D3-A8GI-06 10 135233751 135233751 C T MTG1 3'UTR 0.45 TCGA-D3-A8GI-06 10 135368943 135368943 C T SYCE1 Splice_Site p.X277_splice 0.31 TCGA-D3-A8GI-06 10 135369358 135369358 G A SYCE1 Silent p.S215S 0.63 TCGA-D3-A8GI-06 10 135372393 135372393 C T SYCE1 Missense_Mutation p.E87K 0.44 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 10 14478650 14478650 C T MIR1265 RNA 0.62 TCGA-D3-A8GI-06 10 15326017 15326017 G A FAM171A1 Missense_Mutation p.S62F 0.62 tolerated(0.09) possibly_damaging(0.659) TCGA-D3-A8GI-06 10 15649678 15649678 G A ITGA8 Nonsense_Mutation p.R588* 0.23 TCGA-D3-A8GI-06 10 15726101 15726101 C T ITGA8 Missense_Mutation p.R157K 0.61 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 10 16859068 16859068 G A RSU1 Silent p.L5L 0.26 TCGA-D3-A8GI-06 10 16877063 16877063 G A CUBN Missense_Mutation p.H3438Y 0.27 tolerated(0.28) benign(0.097) TCGA-D3-A8GI-06 10 16883020 16883020 C T CUBN Silent p.A3230A 0.34 TCGA-D3-A8GI-06 10 16893294 16893294 G A CUBN Silent p.F3201F 0.28 TCGA-D3-A8GI-06 10 17087068 17087068 C T CUBN Missense_Mutation p.E1204K 0.58 tolerated(0.22) benign(0.25) TCGA-D3-A8GI-06 10 18242191 18242191 G A SLC39A12 5'UTR 0.29 TCGA-D3-A8GI-06 10 20500617 20500617 C T PLXDC2 Missense_Mutation p.R361C 0.12 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 10 21148728 21148728 C T NEBL Missense_Mutation p.E238K 0.25 deleterious(0.01) possibly_damaging(0.794) TCGA-D3-A8GI-06 10 21185923 21185923 C T NEBL Missense_Mutation p.M39I 0.20 tolerated(0.11) benign(0.021) TCGA-D3-A8GI-06 10 23482933 23482933 G A PTF1A 3'UTR 0.38 TCGA-D3-A8GI-06 10 24762301 24762301 C T KIAA1217 Missense_Mutation p.P331S 0.34 tolerated(0.13) probably_damaging(0.999) TCGA-D3-A8GI-06 10 24833160 24833160 G A KIAA1217 Missense_Mutation p.R1654K 0.38 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 10 25701294 25701294 C T GPR158 Silent p.F409F 0.47 TCGA-D3-A8GI-06 10 25755615 25755615 G A GPR158 Silent p.T457T 0.39 TCGA-D3-A8GI-06 10 25878048 25878048 C T GPR158 Silent p.I622I 0.43 TCGA-D3-A8GI-06 10 25885654 25885654 C T GPR158 Missense_Mutation p.S694F 0.43 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 10 26417388 26417388 C T MYO3A Missense_Mutation p.S728F 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 26559583 26559583 C T GAD2 Silent p.F330F 0.44 TCGA-D3-A8GI-06 10 26792153 26792153 G A APBB1IP Missense_Mutation p.D161N 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GI-06 10 26825015 26825015 G C APBB1IP Missense_Mutation p.G305R 0.45 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 10 26849116 26849116 G A APBB1IP Missense_Mutation p.G413E 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 10 27326179 27326179 A G ANKRD26 Missense_Mutation p.I878T 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 10 27536359 27536359 G A RP11-85G18.6 Intron 0.63 TCGA-D3-A8GI-06 10 27687650 27687650 C T PTCHD3 Missense_Mutation p.G626D 0.30 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 10 27703054 27703054 C T PTCHD3 Silent p.Q42Q 0.34 TCGA-D3-A8GI-06 10 28023575 28023575 G A MKX Silent p.P216P 0.28 TCGA-D3-A8GI-06 10 28023685 28023685 C T MKX Missense_Mutation p.G180R 0.18 tolerated(0.25) benign(0.002) TCGA-D3-A8GI-06 10 28229609 28229609 C T ARMC4 Silent p.T623T 0.45 TCGA-D3-A8GI-06 10 28260227 28260227 C T ARMC4 Missense_Mutation p.E318K 0.26 tolerated(0.19) benign(0.004) TCGA-D3-A8GI-06 10 28274027 28274027 C T ARMC4 Missense_Mutation p.E166K 0.36 tolerated(0.1) benign(0.012) TCGA-D3-A8GI-06 10 28342943 28342943 G A MPP7 3'UTR 0.43 TCGA-D3-A8GI-06 10 28413016 28413016 C T MPP7 Missense_Mutation p.E187K 0.45 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GI-06 10 29581445 29581445 C T LYZL1 Intron 0.31 TCGA-D3-A8GI-06 10 29600106 29600106 G A LYZL1 3'UTR 0.41 TCGA-D3-A8GI-06 10 30316409 30316409 C T KIAA1462 Missense_Mutation p.V890I 0.39 tolerated(0.07) benign(0.203) TCGA-D3-A8GI-06 10 30336535 30336535 G A KIAA1462 Silent p.S69S 0.42 TCGA-D3-A8GI-06 10 30336556 30336556 C T KIAA1462 Silent p.G62G 0.46 TCGA-D3-A8GI-06 10 30749714 30749714 G A MAP3K8 Silent p.L451L 0.49 TCGA-D3-A8GI-06 10 31799793 31799793 G A ZEB1 Missense_Mutation p.G226E 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 10 31809835 31809835 G A ZEB1 Silent p.G525G 0.31 TCGA-D3-A8GI-06 10 31815690 31815690 A T ZEB1 Missense_Mutation p.K959M 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 32560728 32560728 G A EPC1 Missense_Mutation p.S731F 0.38 tolerated(0.05) probably_damaging(0.93) TCGA-D3-A8GI-06 10 32863422 32863422 G A C10ORF68 Intron 0.30 TCGA-D3-A8GI-06 10 33474631 33474631 C T NRP1 Missense_Mutation p.G786R 0.36 tolerated(0.54) possibly_damaging(0.871) TCGA-D3-A8GI-06 10 33502350 33502350 C T NRP1 Nonsense_Mutation p.W526* 0.31 TCGA-D3-A8GI-06 10 33552730 33552730 G A NRP1 Missense_Mutation p.P168S 0.41 deleterious(0.01) possibly_damaging(0.798) TCGA-D3-A8GI-06 10 35928996 35928996 G A FZD8 Silent p.I454I 0.31 TCGA-D3-A8GI-06 10 37430753 37430753 G A ANKRD30A Missense_Mutation p.V254M 0.46 tolerated(0.09) benign(0.265) TCGA-D3-A8GI-06 10 37508226 37508226 G A ANKRD30A Missense_Mutation p.E1140K 0.47 deleterious(0.01) possibly_damaging(0.636) TCGA-D3-A8GI-06 10 37508802 37508802 G A ANKRD30A Missense_Mutation p.E1332K 0.36 deleterious(0) possibly_damaging(0.636) TCGA-D3-A8GI-06 10 402344 402344 G A DIP2C Intron 0.55 TCGA-D3-A8GI-06 10 42928741 42928741 C T CCNYL2 RNA 0.10 TCGA-D3-A8GI-06 10 43695677 43695677 C T RASGEF1A Missense_Mutation p.D237N 0.55 deleterious(0) benign(0.324) TCGA-D3-A8GI-06 10 43696301 43696301 C T RASGEF1A Missense_Mutation p.M165I 0.22 tolerated(0.44) benign(0.001) TCGA-D3-A8GI-06 10 45473305 45473305 C T C10orf10 Silent p.T58T 0.41 TCGA-D3-A8GI-06 10 46998927 46998927 C T GPRIN2 Missense_Mutation p.P16L 0.21 tolerated_low_confidence(0.14) benign(0.063) TCGA-D3-A8GI-06 10 47000054 47000054 G A GPRIN2 Missense_Mutation p.E392K 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 48381980 48381980 G A RBP3 Silent p.L1223L 0.29 TCGA-D3-A8GI-06 10 48390571 48390571 G A RBP3 Missense_Mutation p.P103S 0.40 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A8GI-06 10 4881986 4881986 C T AKR1E2 Silent p.S216S 0.52 TCGA-D3-A8GI-06 10 49444536 49444536 C T FRMPD2 Missense_Mutation p.G328R 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 49444537 49444537 C T FRMPD2 Silent p.P327P 0.38 TCGA-D3-A8GI-06 10 49446069 49446069 G A FRMPD2 Missense_Mutation p.P296S 0.65 tolerated(0.32) benign(0.015) TCGA-D3-A8GI-06 10 49654505 49654505 C T ARHGAP22 Missense_Mutation p.E692K 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 10 5009175 5009175 G A AKR1C1 Silent p.L103L 0.26 TCGA-D3-A8GI-06 10 50315659 50315659 G A VSTM4 Missense_Mutation p.S146F 0.38 deleterious(0) possibly_damaging(0.878) TCGA-D3-A8GI-06 10 50369498 50369498 C T C10orf128 Intron 0.50 TCGA-D3-A8GI-06 10 5037960 5037960 C T AKR1C2 Missense_Mutation p.R223Q 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 10 50396351 50396351 G A C10orf128 Missense_Mutation p.L11F 0.38 tolerated(0.28) benign(0.262) TCGA-D3-A8GI-06 10 50531148 50531148 C T C10orf71 Silent p.F186F 0.25 TCGA-D3-A8GI-06 10 50531485 50531485 G A C10orf71 Missense_Mutation p.E299K 0.50 tolerated(0.31) probably_damaging(0.957) TCGA-D3-A8GI-06 10 50531639 50531639 G A C10orf71 Missense_Mutation p.G350E 0.24 tolerated(0.52) benign(0.316) TCGA-D3-A8GI-06 10 50531905 50531905 C T C10orf71 Missense_Mutation p.P439S 0.43 deleterious(0.02) possibly_damaging(0.604) TCGA-D3-A8GI-06 10 50532357 50532357 A G C10orf71 Silent p.L589L 0.15 TCGA-D3-A8GI-06 10 50532359 50532359 C A C10orf71 Missense_Mutation p.T590N 0.15 tolerated(0.08) benign(0.085) TCGA-D3-A8GI-06 10 50667204 50667204 G A ERCC6 Missense_Mutation p.S1380L 0.22 tolerated(0.09) benign(0.013) TCGA-D3-A8GI-06 10 50824120 50824120 G A CHAT Intron 0.20 TCGA-D3-A8GI-06 10 50854647 50854647 G A CHAT Missense_Mutation p.R403K 0.45 tolerated(0.45) probably_damaging(0.97) TCGA-D3-A8GI-06 10 50943196 50943196 G T OGDHL 3'UTR 0.17 TCGA-D3-A8GI-06 10 50960254 50960254 G A OGDHL Silent p.F173F 0.31 TCGA-D3-A8GI-06 10 51465115 51465115 G A AGAP7 Silent p.I447I 0.35 TCGA-D3-A8GI-06 10 5149707 5149707 T A AKR1C3 3'UTR 0.45 TCGA-D3-A8GI-06 10 51974591 51974592 CC T ASAH2 Frame_Shift_Del p.G351Kfs*50 0.31 TCGA-D3-A8GI-06 10 52067767 52067767 C T SGMS1 Nonsense_Mutation p.W346* 0.60 TCGA-D3-A8GI-06 10 52390625 52390625 C T RP11-50E11.3 RNA 0.59 TCGA-D3-A8GI-06 10 52573666 52573666 G A A1CF Missense_Mutation p.P433L 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 10 52587970 52587970 C T A1CF Silent p.V238V 0.45 TCGA-D3-A8GI-06 10 53564436 53564436 G A PRKG1 Missense_Mutation p.M228I 0.14 tolerated(0.35) benign(0.011) TCGA-D3-A8GI-06 10 54011347 54011347 C T PRKG1 Missense_Mutation p.A365V 0.24 tolerated(0.29) benign(0.048) TCGA-D3-A8GI-06 10 5436399 5436399 C T TUBAL3 Missense_Mutation p.G141E 0.55 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D3-A8GI-06 10 5498205 5498205 C T NET1 Silent p.S451S 0.52 TCGA-D3-A8GI-06 10 55566638 55566638 C T PCDH15 Missense_Mutation p.A1583T 0.25 deleterious_low_confidence(0.01) benign(0.045) TCGA-D3-A8GI-06 10 55581548 55581548 C T PCDH15 3'UTR 0.34 TCGA-D3-A8GI-06 10 55780005 55780005 C T PCDH15 Missense_Mutation p.D900N 0.22 deleterious(0.05) probably_damaging(0.962) TCGA-D3-A8GI-06 10 55849784 55849784 C T PCDH15 Missense_Mutation p.E653K 0.44 tolerated(0.87) benign(0.021) TCGA-D3-A8GI-06 10 55955622 55955622 G A PCDH15 Missense_Mutation p.P376S 0.30 tolerated(0.21) possibly_damaging(0.823) TCGA-D3-A8GI-06 10 5788973 5788973 G A FAM208B Missense_Mutation p.G1197R 0.51 deleterious(0.01) benign(0.156) TCGA-D3-A8GI-06 10 61028322 61028322 C T FAM13C Silent p.K311K 0.47 TCGA-D3-A8GI-06 10 61028361 61028361 C T FAM13C Silent p.R298R 0.20 TCGA-D3-A8GI-06 10 6104191 6104191 C T IL2RA 5'UTR 0.33 TCGA-D3-A8GI-06 10 61413636 61413636 C T SLC16A9 Missense_Mutation p.G383D 0.55 tolerated(0.07) probably_damaging(0.929) TCGA-D3-A8GI-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.46 TCGA-D3-A8GI-06 10 61830396 61830396 G A ANK3 Silent p.L3415L 0.09 TCGA-D3-A8GI-06 10 61834021 61834021 C T ANK3 Silent p.K2206K 0.51 TCGA-D3-A8GI-06 10 61835708 61835708 G A ANK3 Missense_Mutation p.P1644L 0.15 probably_damaging(0.994) TCGA-D3-A8GI-06 10 61835709 61835709 G A ANK3 Missense_Mutation p.P1644S 0.15 probably_damaging(0.992) TCGA-D3-A8GI-06 10 61848032 61848032 G A ANK3 Missense_Mutation p.S1138F 0.20 probably_damaging(1) TCGA-D3-A8GI-06 10 61848091 61848091 C T ANK3 Silent p.G1118G 0.16 TCGA-D3-A8GI-06 10 62023770 62023770 G A ANK3 Silent p.F174F 0.15 TCGA-D3-A8GI-06 10 62149192 62149192 C T ANK3 Silent p.R35R 0.19 TCGA-D3-A8GI-06 10 63195970 63195970 G A TMEM26 Silent p.I76I 0.43 TCGA-D3-A8GI-06 10 63519881 63519881 C T C10orf107 Missense_Mutation p.S118L 0.49 deleterious(0.01) benign(0.26) TCGA-D3-A8GI-06 10 64574155 64574155 G A EGR2 Silent p.P81P 0.52 TCGA-D3-A8GI-06 10 6552973 6552973 C T PRKCQ Missense_Mutation p.G101E 0.26 tolerated(0.14) benign(0.04) TCGA-D3-A8GI-06 10 68138977 68138977 C T CTNNA3 Missense_Mutation p.M555I 0.46 deleterious(0) unknown(0) TCGA-D3-A8GI-06 10 68687016 68687016 G A LRRTM3 Silent p.L114L 0.32 TCGA-D3-A8GI-06 10 68940141 68940141 C T CTNNA3 Silent p.R327R 0.43 TCGA-D3-A8GI-06 10 69748489 69748489 G A HERC4 Silent p.P579P 0.25 TCGA-D3-A8GI-06 10 69832664 69832664 G A HERC4 Missense_Mutation p.H68Y 0.33 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GI-06 10 69881721 69881721 C T MYPN Missense_Mutation p.R176C 0.25 deleterious(0) possibly_damaging(0.891) TCGA-D3-A8GI-06 10 70446447 70446447 C T TET1 Missense_Mutation p.S1796L 0.35 tolerated(0.08) benign(0.016) TCGA-D3-A8GI-06 10 70450706 70450706 C T TET1 Missense_Mutation p.S1849F 0.59 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GI-06 10 71000489 71000489 G A HKDC1 Missense_Mutation p.E225K 0.27 tolerated(0.06) probably_damaging(0.985) TCGA-D3-A8GI-06 10 71174706 71174706 G A TACR2 Silent p.L194L 0.21 TCGA-D3-A8GI-06 10 71640263 71640263 C T COL13A1 Missense_Mutation p.S147F 0.65 deleterious(0) benign(0.121) TCGA-D3-A8GI-06 10 71712713 71712713 C T COL13A1 Missense_Mutation p.P701S 0.65 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A8GI-06 10 72289755 72289755 C T PALD1 Silent p.F133F 0.71 TCGA-D3-A8GI-06 10 72289824 72289824 G A PALD1 Silent p.R156R 0.17 TCGA-D3-A8GI-06 10 72307148 72307148 C T PALD1 Silent p.T736T 0.21 TCGA-D3-A8GI-06 10 72358478 72358478 G A PRF1 Silent p.P333P 0.48 TCGA-D3-A8GI-06 10 72509673 72509673 G A ADAMTS14 Missense_Mutation p.D790N 0.21 deleterious(0.03) benign(0.001) TCGA-D3-A8GI-06 10 73048424 73048424 G A UNC5B Missense_Mutation p.G334E 0.50 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 10 73111419 73111419 C T SLC29A3 Missense_Mutation p.R162C 0.26 tolerated(0.18) benign(0.002) TCGA-D3-A8GI-06 10 73501520 73501520 C T CDH23 Silent p.L1568L 0.33 TCGA-D3-A8GI-06 10 73515182 73515182 C T C10orf54 Missense_Mutation p.G204R 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 10 73551002 73551002 C T CDH23 5'Flank 0.40 TCGA-D3-A8GI-06 10 73572526 73572526 G A CDH23 Missense_Mutation p.G931E 0.36 deleterious_low_confidence(0) benign(0.137) TCGA-D3-A8GI-06 10 74695483 74695483 G A PLA2G12B Silent p.S160S 0.30 TCGA-D3-A8GI-06 10 75056735 75056735 A T TTC18 Intron 0.21 TCGA-D3-A8GI-06 10 75393698 75393698 C T MYOZ1 Missense_Mutation p.G210R 0.48 tolerated(0.43) probably_damaging(0.995) TCGA-D3-A8GI-06 10 75407021 75407021 G A SYNPO2L Missense_Mutation p.P797S 0.24 tolerated(1) benign(0.006) TCGA-D3-A8GI-06 10 75456864 75456864 G A AGAP5 Missense_Mutation p.S94F 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-D3-A8GI-06 10 7621927 7621927 G A ITIH5 Silent p.F403F 0.18 TCGA-D3-A8GI-06 10 76789083 76789083 G A KAT6B Missense_Mutation p.E1501K 0.59 benign(0.124) TCGA-D3-A8GI-06 10 77159190 77159190 A G ZNF503 Missense_Mutation p.S420P 0.67 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GI-06 10 79760845 79760845 G A POLR3A Silent p.F789F 0.58 TCGA-D3-A8GI-06 10 8006166 8006166 C T TAF3 Silent p.V231V 0.58 TCGA-D3-A8GI-06 10 81061941 81061941 C T ZMIZ1 Silent p.L699L 0.25 TCGA-D3-A8GI-06 10 81192329 81192329 G A ZCCHC24 Silent p.I144I 0.46 TCGA-D3-A8GI-06 10 81317862 81317862 C T SFTPA2 Missense_Mutation p.E106K 0.19 tolerated(0.1) benign(0.027) TCGA-D3-A8GI-06 10 82036269 82036269 C T MAT1A Missense_Mutation p.E211K 0.62 tolerated(0.08) benign(0.021) TCGA-D3-A8GI-06 10 82126470 82126470 G A DYDC2 Silent p.T113T 0.23 TCGA-D3-A8GI-06 10 85992447 85992447 C T LRIT1 Missense_Mutation p.E370K 0.38 tolerated(0.2) benign(0.137) TCGA-D3-A8GI-06 10 86133450 86133450 C T CCSER2 Missense_Mutation p.S498L 0.16 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 10 88414588 88414588 G A OPN4 Silent p.E16E 0.22 TCGA-D3-A8GI-06 10 88418283 88418283 C T OPN4 Missense_Mutation p.S167F 0.29 deleterious(0) benign(0.424) TCGA-D3-A8GI-06 10 88703497 88703497 C T MMRN2 Silent p.G348G 0.16 TCGA-D3-A8GI-06 10 88768401 88768401 G A RP11-96C23.10 3'Flank 0.21 TCGA-D3-A8GI-06 10 89264834 89264834 G A MINPP1 Silent p.E54E 0.57 TCGA-D3-A8GI-06 10 90528598 90528598 G A LIPN Missense_Mutation p.M195I 0.66 tolerated(0.35) benign(0.023) TCGA-D3-A8GI-06 10 90966256 90966256 C T CH25H Missense_Mutation p.R265Q 0.42 tolerated(0.48) benign(0.003) TCGA-D3-A8GI-06 10 92508890 92508890 C T HTR7 Missense_Mutation p.G334E 0.57 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GI-06 10 92660475 92660475 C T RPP30 Intron 0.58 TCGA-D3-A8GI-06 10 95386569 95386569 C T PDE6C Missense_Mutation p.P338S 0.47 tolerated(0.17) probably_damaging(1) TCGA-D3-A8GI-06 10 95430578 95430578 G A FRA10AC1 Missense_Mutation p.S285L 0.55 deleterious(0.01) benign(0.003) TCGA-D3-A8GI-06 10 95557100 95557100 C T LGI1 Missense_Mutation p.S405F 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 10 95557472 95557472 C T LGI1 Missense_Mutation p.S529F 0.47 deleterious(0.05) benign(0.012) TCGA-D3-A8GI-06 10 95557473 95557473 C T LGI1 Silent p.S529S 0.47 TCGA-D3-A8GI-06 10 95790707 95790707 G A PLCE1 5'UTR 0.37 TCGA-D3-A8GI-06 10 95791173 95791173 G A PLCE1 Missense_Mutation p.E124K 0.16 tolerated_low_confidence(0.55) benign(0.001) TCGA-D3-A8GI-06 10 95993845 95993845 G A PLCE1 Missense_Mutation p.D664N 0.11 tolerated(0.09) possibly_damaging(0.898) TCGA-D3-A8GI-06 10 96025587 96025587 G A PLCE1 Missense_Mutation p.D1385N 0.61 tolerated(0.06) benign(0.119) TCGA-D3-A8GI-06 10 96058139 96058139 C T PLCE1 Missense_Mutation p.S1724F 0.50 deleterious(0.03) benign(0.005) TCGA-D3-A8GI-06 10 96443609 96443609 C T CYP2C18 Silent p.L11L 0.51 TCGA-D3-A8GI-06 10 96454831 96454831 C T CYP2C18 Silent p.I213I 0.60 TCGA-D3-A8GI-06 10 96493133 96493133 G A CYP2C18 Missense_Mutation p.G410D 0.25 deleterious(0.02) benign(0.141) TCGA-D3-A8GI-06 10 96535275 96535275 G A CYP2C19 Missense_Mutation p.E154K 0.15 deleterious(0.04) benign(0.251) TCGA-D3-A8GI-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.23 tolerated(0.19) benign(0.064) TCGA-D3-A8GI-06 10 96541701 96541701 G A CYP2C19 Missense_Mutation p.D256N 0.19 deleterious(0.03) benign(0.21) TCGA-D3-A8GI-06 10 96602593 96602593 G A CYP2C19 Splice_Site p.X321_splice 0.66 TCGA-D3-A8GI-06 10 96612487 96612487 C T CYP2C19 Intron 0.18 TCGA-D3-A8GI-06 10 96708987 96708987 G A CYP2C9 Missense_Mutation p.M255I 0.18 deleterious(0) benign(0) TCGA-D3-A8GI-06 10 96827110 96827110 G A CYP2C8 Silent p.I112I 0.50 TCGA-D3-A8GI-06 10 97158777 97158777 G A SORBS1 Silent p.L385L 0.21 TCGA-D3-A8GI-06 10 97397069 97397069 G A ALDH18A1 Missense_Mutation p.S143L 0.17 tolerated(0.11) benign(0.015) TCGA-D3-A8GI-06 10 98078190 98078190 C T DNTT Silent p.V95V 0.66 TCGA-D3-A8GI-06 10 98080505 98080505 G A DNTT Missense_Mutation p.G213E 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A8GI-06 10 98172969 98172969 C T TLL2 Missense_Mutation p.R343Q 0.56 deleterious(0.03) possibly_damaging(0.686) TCGA-D3-A8GI-06 10 98205860 98205860 C T TLL2 Missense_Mutation p.E118K 0.53 tolerated(0.68) benign(0.001) TCGA-D3-A8GI-06 10 99153480 99153480 A G RRP12 Missense_Mutation p.L164P 0.45 deleterious(0.01) benign(0.299) TCGA-D3-A8GI-06 10 99329930 99329930 C T UBTD1 Missense_Mutation p.R112C 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GI-06 11 100064381 100064381 G A CNTN5 Missense_Mutation p.E624K 0.59 deleterious(0.03) possibly_damaging(0.619) TCGA-D3-A8GI-06 11 100179181 100179181 G A CNTN5 Missense_Mutation p.G904E 0.41 tolerated(0.2) probably_damaging(0.997) TCGA-D3-A8GI-06 11 100920730 100920730 C T PGR Silent p.Q806Q 0.17 TCGA-D3-A8GI-06 11 101375087 101375087 C T TRPC6 Missense_Mutation p.D205N 0.44 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A8GI-06 11 1017991 1017991 T C MUC6 Missense_Mutation p.T1604A 0.08 unknown(0) TCGA-D3-A8GI-06 11 101946603 101946603 G A C11orf70 Splice_Site p.X146_splice 0.34 TCGA-D3-A8GI-06 11 102649425 102649425 G A MMP10 Silent p.Y184Y 0.59 TCGA-D3-A8GI-06 11 102706710 102706710 G A MMP3 3'UTR 0.45 TCGA-D3-A8GI-06 11 102706732 102706732 C T MMP3 3'UTR 0.32 TCGA-D3-A8GI-06 11 102742413 102742413 C T MMP12 RNA 0.21 TCGA-D3-A8GI-06 11 102814921 102814921 C T MMP13 3'UTR 0.59 TCGA-D3-A8GI-06 11 1028662 1028662 G A MUC6 Silent p.F525F 0.50 TCGA-D3-A8GI-06 11 103049852 103049852 C T DYNC2H1 Silent p.P2079P 0.25 TCGA-D3-A8GI-06 11 103060499 103060499 C T DYNC2H1 Missense_Mutation p.S2464L 0.25 benign(0.022) TCGA-D3-A8GI-06 11 10328244 10328244 C T ADM 3'UTR 0.31 TCGA-D3-A8GI-06 11 103907672 103907672 C T DDI1 Missense_Mutation p.P41L 0.53 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 11 105795261 105795261 C T GRIA4 Missense_Mutation p.S538F 0.27 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GI-06 11 10651122 10651122 C T MRVI1 Silent p.G179G 0.22 TCGA-D3-A8GI-06 11 106617327 106617327 G A GUCY1A2 Nonsense_Mutation p.Q627* 0.37 TCGA-D3-A8GI-06 11 1075791 1075791 G A MUC2 Missense_Mutation p.E73K 0.50 probably_damaging(1) TCGA-D3-A8GI-06 11 108385386 108385386 C T EXPH5 Missense_Mutation p.G283D 0.51 tolerated(0.08) probably_damaging(0.955) TCGA-D3-A8GI-06 11 1095778 1095778 G A MUC2 Missense_Mutation p.G2097S 0.69 unknown(0) TCGA-D3-A8GI-06 11 1097704 1097704 C T MUC2 Missense_Mutation p.T2266I 0.10 unknown(0) TCGA-D3-A8GI-06 11 111156866 111156866 G A C11orf53 3'UTR 0.45 TCGA-D3-A8GI-06 11 111228349 111228349 G A POU2AF1 Missense_Mutation p.P93S 0.28 tolerated(0.59) possibly_damaging(0.874) TCGA-D3-A8GI-06 11 111368822 111368822 A G BTG4 Missense_Mutation p.I71T 0.38 tolerated(0.21) possibly_damaging(0.756) TCGA-D3-A8GI-06 11 111625772 111625772 G A PPP2R1B Missense_Mutation p.P297L 0.19 deleterious(0.02) possibly_damaging(0.892) TCGA-D3-A8GI-06 11 111941187 111941187 G A PIH1D2 Silent p.V262V 0.33 TCGA-D3-A8GI-06 11 113194021 113194021 C T TTC12 Nonsense_Mutation p.Q24* 0.22 TCGA-D3-A8GI-06 11 113266791 113266791 T C ANKK1 Missense_Mutation p.F229L 0.53 tolerated(0.7) benign(0.006) TCGA-D3-A8GI-06 11 113269904 113269904 G A ANKK1 Missense_Mutation p.D405N 0.53 tolerated(0.12) probably_damaging(0.955) TCGA-D3-A8GI-06 11 113566136 113566136 G A TMPRSS5 Missense_Mutation p.S203F 0.27 deleterious(0.03) probably_damaging(0.971) TCGA-D3-A8GI-06 11 113631072 113631072 A C ZW10 Missense_Mutation p.L147V 0.56 tolerated(0.53) benign(0.009) TCGA-D3-A8GI-06 11 113684511 113684511 G A USP28 Intron 0.41 TCGA-D3-A8GI-06 11 113816794 113816794 C T HTR3B Missense_Mutation p.L421F 0.56 deleterious(0.01) benign(0.015) TCGA-D3-A8GI-06 11 113935049 113935049 G A ZBTB16 Missense_Mutation p.D343N 0.50 deleterious(0.03) benign(0.081) TCGA-D3-A8GI-06 11 114569081 114569081 C T NXPE2 Silent p.F149F 0.44 TCGA-D3-A8GI-06 11 117307860 117307860 G A DSCAML1 Silent p.F1626F 0.20 TCGA-D3-A8GI-06 11 117309603 117309603 C T DSCAML1 Missense_Mutation p.R1474Q 0.44 deleterious(0.01) probably_damaging(0.918) TCGA-D3-A8GI-06 11 117375658 117375658 G A DSCAML1 Silent p.V781V 0.58 TCGA-D3-A8GI-06 11 117973868 117973868 C T TMPRSS4 Silent p.F70F 0.24 TCGA-D3-A8GI-06 11 118083679 118083679 C T AMICA1 Intron 0.27 TCGA-D3-A8GI-06 11 118182867 118182867 G A CD3E Splice_Site p.X29_splice 0.20 TCGA-D3-A8GI-06 11 118183376 118183376 C T CD3E Silent p.C49C 0.32 TCGA-D3-A8GI-06 11 118374533 118374533 C T KMT2A Silent p.S2642S 0.21 TCGA-D3-A8GI-06 11 118422517 118422522 TCAAAC - IFT46 In_Frame_Del p.F269_E270del 0.22 TCGA-D3-A8GI-06 11 118531251 118531251 G A TREH Silent p.L367L 0.29 TCGA-D3-A8GI-06 11 119050833 119050833 C T NLRX1 Silent p.L701L 0.59 TCGA-D3-A8GI-06 11 119057370 119057370 G A PDZD3 Missense_Mutation p.D101N 0.57 tolerated(0.53) benign(0.002) TCGA-D3-A8GI-06 11 119243746 119243746 C T USP2 Missense_Mutation p.D149N 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.663) TCGA-D3-A8GI-06 11 119991328 119991328 G A TRIM29 Missense_Mutation p.T494I 0.52 tolerated(0.22) benign(0.021) TCGA-D3-A8GI-06 11 120169024 120169024 G A POU2F3 Silent p.R63R 0.60 TCGA-D3-A8GI-06 11 120745952 120745952 G A GRIK4 Silent p.Q388Q 0.11 TCGA-D3-A8GI-06 11 120996263 120996263 C T TECTA Silent p.L486L 0.31 TCGA-D3-A8GI-06 11 1213153 1213153 C T MUC5AC RNA 0.40 TCGA-D3-A8GI-06 11 12281342 12281342 G A MICAL2 Missense_Mutation p.E1078K 0.59 tolerated_low_confidence(0.33) benign(0.011) TCGA-D3-A8GI-06 11 122953807 122953807 C T CLMP Missense_Mutation p.R222Q 0.20 tolerated(0.27) benign(0.031) TCGA-D3-A8GI-06 11 123474181 123474181 G A GRAMD1B Silent p.G223G 0.46 TCGA-D3-A8GI-06 11 123524634 123524634 G A SCN3B 5'UTR 0.58 TCGA-D3-A8GI-06 11 123753816 123753816 G A TMEM225 3'UTR 0.46 TCGA-D3-A8GI-06 11 123777410 123777410 C T OR8D4 Missense_Mutation p.S91F 0.23 tolerated(0.11) benign(0.019) TCGA-D3-A8GI-06 11 123810464 123810464 C T OR4D5 Silent p.V47V 0.32 TCGA-D3-A8GI-06 11 123810530 123810530 G A OR4D5 Silent p.L69L 0.52 TCGA-D3-A8GI-06 11 123848149 123848149 C G OR10S1 Missense_Mutation p.A84P 0.27 deleterious(0) possibly_damaging(0.759) TCGA-D3-A8GI-06 11 123848238 123848238 C T OR10S1 Missense_Mutation p.G54E 0.42 deleterious(0) possibly_damaging(0.868) TCGA-D3-A8GI-06 11 123848267 123848267 G A OR10S1 Silent p.F44F 0.46 TCGA-D3-A8GI-06 11 123886461 123886461 C T OR10G4 Silent p.F60F 0.24 TCGA-D3-A8GI-06 11 123901097 123901097 C T OR10G8 Silent p.F256F 0.27 TCGA-D3-A8GI-06 11 123909434 123909434 G A OR10G7 Missense_Mutation p.S92F 0.29 deleterious(0) benign(0.12) TCGA-D3-A8GI-06 11 123909463 123909463 G A OR10G7 Silent p.T82T 0.46 TCGA-D3-A8GI-06 11 123909528 123909528 G A OR10G7 Missense_Mutation p.L61F 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 123989789 123989789 G A VWA5A Missense_Mutation p.M251I 0.62 deleterious(0.03) benign(0.01) TCGA-D3-A8GI-06 11 123994093 123994093 G A VWA5A Silent p.L317L 0.49 TCGA-D3-A8GI-06 11 123994114 123994114 T A VWA5A Nonsense_Mutation p.C324* 0.52 TCGA-D3-A8GI-06 11 124016038 124016038 G A VWA5A Missense_Mutation p.R750K 0.70 tolerated(0.78) benign(0.005) TCGA-D3-A8GI-06 11 124180299 124180299 G A OR8D1 Missense_Mutation p.R122C 0.67 deleterious(0.01) benign(0.015) TCGA-D3-A8GI-06 11 124253054 124253054 G A OR8B2 Silent p.F62F 0.47 TCGA-D3-A8GI-06 11 124266816 124266816 G A OR8B3 Silent p.L144L 0.29 TCGA-D3-A8GI-06 11 124310196 124310196 G A OR8B8 Silent p.P262P 0.19 TCGA-D3-A8GI-06 11 124310332 124310332 G A OR8B8 Missense_Mutation p.S217F 0.47 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-D3-A8GI-06 11 124413341 124413341 G A OR8B12 Silent p.F70F 0.27 TCGA-D3-A8GI-06 11 124440490 124440490 G A OR8A1 Missense_Mutation p.E176K 0.57 deleterious(0) possibly_damaging(0.72) TCGA-D3-A8GI-06 11 124624534 124624534 G A ESAM Intron 0.51 TCGA-D3-A8GI-06 11 124757352 124757352 C T ROBO4 Silent p.P700P 0.47 TCGA-D3-A8GI-06 11 124763779 124763779 C T ROBO4 Missense_Mutation p.R494Q 0.40 tolerated(0.27) benign(0.044) TCGA-D3-A8GI-06 11 124765800 124765800 C T ROBO4 Missense_Mutation p.D230N 0.56 tolerated(0.1) benign(0.012) TCGA-D3-A8GI-06 11 1250432 1250432 G A MUC5B Missense_Mutation p.E337K 0.25 unknown(0) TCGA-D3-A8GI-06 11 125280095 125280095 C T PKNOX2 Missense_Mutation p.L198F 0.18 tolerated(0.7) benign(0.032) TCGA-D3-A8GI-06 11 125359238 125359238 C A FEZ1 Intron 0.47 TCGA-D3-A8GI-06 11 1254368 1254368 G A MUC5B Missense_Mutation p.G731S 0.45 unknown(0) TCGA-D3-A8GI-06 11 125875842 125875842 G A CDON Missense_Mutation p.P555S 0.26 deleterious(0.01) possibly_damaging(0.87) TCGA-D3-A8GI-06 11 1267116 1267116 G A MUC5B Silent p.T3002T 0.27 TCGA-D3-A8GI-06 11 1271421 1271421 G A MUC5B Silent p.T4437T 0.26 TCGA-D3-A8GI-06 11 128426244 128426244 G A ETS1 Silent p.P52P 0.44 TCGA-D3-A8GI-06 11 128426245 128426245 G A ETS1 Missense_Mutation p.P52L 0.46 deleterious(0.01) benign(0.001) TCGA-D3-A8GI-06 11 128709106 128709106 C T KCNJ1 Missense_Mutation p.D364N 0.26 tolerated(0.42) possibly_damaging(0.723) TCGA-D3-A8GI-06 11 128843899 128843899 A G ARHGAP32 Intron 0.43 TCGA-D3-A8GI-06 11 129312808 129312808 G A BARX2 Silent p.K189K 0.56 TCGA-D3-A8GI-06 11 129739854 129739854 G A NFRKB Silent p.S1047S 0.53 TCGA-D3-A8GI-06 11 129775609 129775609 G A PRDM10 Missense_Mutation p.P1068L 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 130342969 130342969 C T ADAMTS15 Silent p.I702I 0.22 TCGA-D3-A8GI-06 11 132082036 132082036 C T NTM Missense_Mutation p.P174L 0.43 deleterious(0.01) benign(0.187) TCGA-D3-A8GI-06 11 133794782 133794782 G A IGSF9B Silent p.F684F 0.51 TCGA-D3-A8GI-06 11 133814214 133814214 G A IGSF9B Missense_Mutation p.R104C 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 13397169 13397169 G A ARNTL Silent p.T394T 0.40 TCGA-D3-A8GI-06 11 134151925 134151925 C T GLB1L3 Silent p.F146F 0.27 TCGA-D3-A8GI-06 11 134162084 134162084 T G GLB1L3 Missense_Mutation p.V263G 0.37 deleterious(0) benign(0.034) TCGA-D3-A8GI-06 11 134181009 134181009 C T GLB1L3 Missense_Mutation p.P411L 0.39 tolerated(0.07) benign(0.008) TCGA-D3-A8GI-06 11 134214934 134214934 C T GLB1L2 Silent p.F120F 0.15 TCGA-D3-A8GI-06 11 134252719 134252719 C T B3GAT1 Missense_Mutation p.R268Q 0.46 tolerated(0.26) benign(0.215) TCGA-D3-A8GI-06 11 14808161 14808161 C T PDE3B Missense_Mutation p.P403L 0.59 tolerated(0.06) possibly_damaging(0.728) TCGA-D3-A8GI-06 11 1606106 1606106 C T KRTAP5-1 Missense_Mutation p.G125E 0.34 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 11 1606217 1606217 C T KRTAP5-1 Missense_Mutation p.G88D 0.28 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 11 1642947 1642947 C T KRTAP5-4 Missense_Mutation p.G126D 0.28 tolerated_low_confidence(0.06) unknown(0) TCGA-D3-A8GI-06 11 1643015 1643015 G A KRTAP5-4 Silent p.S103S 0.15 TCGA-D3-A8GI-06 11 16822616 16822616 C T PLEKHA7 Missense_Mutation p.E772K 0.50 deleterious(0.04) possibly_damaging(0.786) TCGA-D3-A8GI-06 11 16824792 16824792 G A PLEKHA7 Silent p.I686I 0.51 TCGA-D3-A8GI-06 11 16838505 16838505 G A PLEKHA7 Missense_Mutation p.P570S 0.37 tolerated(0.22) probably_damaging(0.99) TCGA-D3-A8GI-06 11 17409045 17409045 G A KCNJ11 Silent p.F198F 0.50 TCGA-D3-A8GI-06 11 17450166 17450166 C T ABCC8 Silent p.Q623Q 0.25 TCGA-D3-A8GI-06 11 17517128 17517128 C T USH1C Silent p.Q881Q 0.25 TCGA-D3-A8GI-06 11 17542907 17542907 C T USH1C Silent p.R357R 0.25 TCGA-D3-A8GI-06 11 17552826 17552826 C T USH1C Missense_Mutation p.V88M 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 17793808 17793808 C T KCNC1 Silent p.I389I 0.22 TCGA-D3-A8GI-06 11 17794238 17794238 C T KCNC1 Intron 0.53 TCGA-D3-A8GI-06 11 18044370 18044370 A G TPH1 Missense_Mutation p.F379L 0.39 deleterious(0.04) probably_damaging(0.984) TCGA-D3-A8GI-06 11 18159526 18159526 C T MRGPRX3 Silent p.F259F 0.22 TCGA-D3-A8GI-06 11 18194722 18194722 T G MRGPRX4 5'UTR 0.52 TCGA-D3-A8GI-06 11 18195458 18195458 C T MRGPRX4 Silent p.L219L 0.28 TCGA-D3-A8GI-06 11 18269491 18269491 G A SAA2 Missense_Mutation p.S23L 0.48 deleterious(0.04) benign(0.245) TCGA-D3-A8GI-06 11 18460163 18460163 G A LDHC Nonsense_Mutation p.W227* 0.34 TCGA-D3-A8GI-06 11 18591872 18591872 G A UEVLD Silent p.F82F 0.22 TCGA-D3-A8GI-06 11 18735529 18735529 G A IGSF22 Silent p.S655S 0.29 TCGA-D3-A8GI-06 11 18745734 18745734 T G IGSF22 Missense_Mutation p.E17A 0.41 tolerated_low_confidence(0.1) benign(0.007) TCGA-D3-A8GI-06 11 18745735 18745735 C T IGSF22 Missense_Mutation p.E17K 0.41 deleterious_low_confidence(0.05) benign(0.004) TCGA-D3-A8GI-06 11 18955835 18955835 C T MRGPRX1 Missense_Mutation p.S166N 0.17 tolerated(0.53) benign(0.008) TCGA-D3-A8GI-06 11 18955991 18955991 C T MRGPRX1 Missense_Mutation p.S114N 0.20 deleterious(0.01) possibly_damaging(0.75) TCGA-D3-A8GI-06 11 18956492 18956492 G A MRGPRX1 5'UTR 0.25 TCGA-D3-A8GI-06 11 1905219 1905219 G A LSP1 Missense_Mutation p.E314K 0.23 tolerated_low_confidence(0.08) benign(0.396) TCGA-D3-A8GI-06 11 19172273 19172273 G A ZDHHC13 Splice_Site p.X174_splice 0.22 TCGA-D3-A8GI-06 11 19177471 19177471 T A ZDHHC13 Missense_Mutation p.F334L 0.33 tolerated(0.66) benign(0.001) TCGA-D3-A8GI-06 11 19177473 19177473 C T ZDHHC13 Missense_Mutation p.P335L 0.34 tolerated(0.39) benign(0.01) TCGA-D3-A8GI-06 11 19901609 19901609 C T NAV2 Missense_Mutation p.P236S 0.25 tolerated_low_confidence(0.63) benign(0.002) TCGA-D3-A8GI-06 11 20078137 20078137 C T NAV2 Silent p.F1654F 0.62 TCGA-D3-A8GI-06 11 20907036 20907036 G A NELL1 Missense_Mutation p.G185R 0.66 deleterious(0.02) probably_damaging(0.954) TCGA-D3-A8GI-06 11 21592459 21592459 C T NELL1 Silent p.T710T 0.26 TCGA-D3-A8GI-06 11 22399065 22399065 G A SLC17A6 Missense_Mutation p.E510K 0.60 tolerated(0.28) benign(0.025) TCGA-D3-A8GI-06 11 22399282 22399282 C T SLC17A6 Missense_Mutation p.S582L 0.23 deleterious_low_confidence(0.01) benign(0.079) TCGA-D3-A8GI-06 11 22696557 22696557 T A GAS2 Missense_Mutation p.L48I 0.63 tolerated(0.09) probably_damaging(0.941) TCGA-D3-A8GI-06 11 24518749 24518749 G A LUZP2 5'UTR 0.67 TCGA-D3-A8GI-06 11 24784831 24784831 A T LUZP2 Missense_Mutation p.M125L 0.26 tolerated(0.2) possibly_damaging(0.811) TCGA-D3-A8GI-06 11 24784833 24784833 G A LUZP2 Missense_Mutation p.M125I 0.50 tolerated(0.31) probably_damaging(0.946) TCGA-D3-A8GI-06 11 2594125 2594125 C T KCNQ1 Missense_Mutation p.S277L 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 26484674 26484674 A T ANO3 Missense_Mutation p.E137D 0.59 tolerated(0.44) benign(0.006) TCGA-D3-A8GI-06 11 26743045 26743045 C T SLC5A12 Missense_Mutation p.E73K 0.43 deleterious(0) possibly_damaging(0.741) TCGA-D3-A8GI-06 11 27016142 27016142 C T FIBIN Silent p.P23P 0.22 TCGA-D3-A8GI-06 11 27393180 27393180 G A LGR4 Missense_Mutation p.H521Y 0.11 deleterious(0) possibly_damaging(0.703) TCGA-D3-A8GI-06 11 27393181 27393181 G A LGR4 Silent p.I520I 0.11 TCGA-D3-A8GI-06 11 27679416 27679416 C T BDNF Silent p.R314R 0.50 TCGA-D3-A8GI-06 11 2985006 2985006 T A NAP1L4 Intron 0.54 TCGA-D3-A8GI-06 11 30032708 30032708 G A KCNA4 Silent p.T506T 0.12 TCGA-D3-A8GI-06 11 30557685 30557685 C T MPPED2 Missense_Mutation p.G56S 0.28 tolerated(0.12) probably_damaging(0.966) TCGA-D3-A8GI-06 11 32637580 32637580 C T CCDC73 Silent p.R427R 0.67 TCGA-D3-A8GI-06 11 33880839 33880839 G A LMO2 3'UTR 0.64 TCGA-D3-A8GI-06 11 34118054 34118054 C T CAPRIN1 Silent p.D578D 0.29 TCGA-D3-A8GI-06 11 3428719 3428719 C T TSSC2 RNA 0.50 TCGA-D3-A8GI-06 11 34511599 34511599 G A ELF5 Silent p.S131S 0.50 TCGA-D3-A8GI-06 11 35287300 35287300 C T SLC1A2 Missense_Mutation p.R476K 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 35454297 35454297 G A PAMR1 Silent p.S607S 0.36 TCGA-D3-A8GI-06 11 36595729 36595729 C T RAG1 Missense_Mutation p.S292F 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 36596731 36596731 C T RAG1 Missense_Mutation p.S626L 0.68 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-D3-A8GI-06 11 376124 376124 G A B4GALNT4 Missense_Mutation p.M382I 0.32 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 11 376125 376125 G A B4GALNT4 Missense_Mutation p.E383K 0.33 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GI-06 11 40136877 40136877 C T LRRC4C Silent p.S322S 0.31 TCGA-D3-A8GI-06 11 40137531 40137531 G A LRRC4C Silent p.I104I 0.59 TCGA-D3-A8GI-06 11 419639 419639 C T ANO9 Missense_Mutation p.R626Q 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 43284481 43284481 C T HNRNPKP3 RNA 0.61 TCGA-D3-A8GI-06 11 43421561 43421561 C T TTC17 Silent p.I394I 0.59 TCGA-D3-A8GI-06 11 44074563 44074563 C T ACCSL Missense_Mutation p.P298L 0.51 deleterious(0.03) benign(0.376) TCGA-D3-A8GI-06 11 44098981 44098981 C T ACCS Intron 0.63 TCGA-D3-A8GI-06 11 44104814 44104814 T C ACCS Missense_Mutation p.F403L 0.16 deleterious(0.01) possibly_damaging(0.53) TCGA-D3-A8GI-06 11 44286473 44286473 C T ALX4 Silent p.K389K 0.56 TCGA-D3-A8GI-06 11 4470693 4470693 C T OR52K2 Missense_Mutation p.L42F 0.49 deleterious(0.03) benign(0.102) TCGA-D3-A8GI-06 11 44948286 44948286 C T TSPAN18 Missense_Mutation p.A226V 0.47 tolerated(0.3) benign(0.152) TCGA-D3-A8GI-06 11 45672459 45672459 C T CHST1 Nonsense_Mutation p.W5* 0.26 TCGA-D3-A8GI-06 11 4608578 4608578 C T OR52I2 Missense_Mutation p.T179I 0.18 tolerated(0.28) benign(0.004) TCGA-D3-A8GI-06 11 4608614 4608614 G A OR52I2 Nonsense_Mutation p.W191* 0.23 TCGA-D3-A8GI-06 11 4608926 4608926 G A OR52I2 Missense_Mutation p.G295E 0.21 deleterious(0) possibly_damaging(0.862) TCGA-D3-A8GI-06 11 4661314 4661314 C T OR51D1 Silent p.F98F 0.57 TCGA-D3-A8GI-06 11 4674409 4674409 C T OR51E1 Missense_Mutation p.S218F 0.51 tolerated(0.78) benign(0.162) TCGA-D3-A8GI-06 11 4674660 4674660 C T OR51E1 Nonsense_Mutation p.R302* 0.26 TCGA-D3-A8GI-06 11 46818394 46818394 G A CKAP5 Silent p.L479L 0.24 TCGA-D3-A8GI-06 11 46910994 46910994 A C LRP4 Missense_Mutation p.F728C 0.49 deleterious(0.02) probably_damaging(0.96) TCGA-D3-A8GI-06 11 46911005 46911005 G A LRP4 Silent p.C724C 0.51 TCGA-D3-A8GI-06 11 4703823 4703823 C T OR51E2 Missense_Mutation p.G40E 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 47298336 47298336 C T MADD Silent p.F339F 0.57 TCGA-D3-A8GI-06 11 47801995 47801995 G A NUP160 Missense_Mutation p.P1374L 0.27 deleterious(0.02) benign(0.037) TCGA-D3-A8GI-06 11 48238942 48238942 G A OR4B1 Missense_Mutation p.G194E 0.54 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GI-06 11 4825320 4825320 G A OR52R1 Silent p.Y97Y 0.49 TCGA-D3-A8GI-06 11 4825473 4825473 G A OR52R1 Silent p.I46I 0.53 TCGA-D3-A8GI-06 11 48267210 48267210 C T OR4X2 Silent p.F185F 0.31 TCGA-D3-A8GI-06 11 48285448 48285448 C T OR4X1 Silent p.F12F 0.33 TCGA-D3-A8GI-06 11 48328493 48328493 C T OR4S1 Missense_Mutation p.S240L 0.54 deleterious(0.01) benign(0.433) TCGA-D3-A8GI-06 11 48346880 48346880 C T OR4C3 Missense_Mutation p.H130Y 0.10 deleterious(0.01) benign(0.081) TCGA-D3-A8GI-06 11 48347299 48347299 C T OR4C3 Silent p.F269F 0.51 TCGA-D3-A8GI-06 11 48511070 48511070 G A OR4A47 Missense_Mutation p.M242I 0.26 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GI-06 11 4869800 4869800 G T OR51S1 Silent p.A213A 0.24 TCGA-D3-A8GI-06 11 4903363 4903363 G A OR51T1 Silent p.T105T 0.18 TCGA-D3-A8GI-06 11 4903607 4903607 C T OR51T1 Missense_Mutation p.P187S 0.23 deleterious(0.01) benign(0.034) TCGA-D3-A8GI-06 11 49170203 49170203 C T FOLH1 Missense_Mutation p.R684K 0.50 tolerated(0.08) possibly_damaging(0.538) TCGA-D3-A8GI-06 11 4928676 4928676 G A OR51A7 Nonsense_Mutation p.W26* 0.53 TCGA-D3-A8GI-06 11 4929019 4929019 G A OR51A7 Silent p.R140R 0.54 TCGA-D3-A8GI-06 11 4936880 4936880 G A OR51G2 Missense_Mutation p.S5F 0.50 deleterious(0.03) unknown(0) TCGA-D3-A8GI-06 11 4945282 4945282 G A OR51G1 Silent p.I96I 0.48 TCGA-D3-A8GI-06 11 4967648 4967648 C T OR51A4 Missense_Mutation p.G228E 0.29 deleterious(0.05) benign(0.182) TCGA-D3-A8GI-06 11 49831663 49831663 G A RP11-707M1.1 RNA 0.25 TCGA-D3-A8GI-06 11 5010898 5010898 C T MMP26 Silent p.F40F 0.36 TCGA-D3-A8GI-06 11 5011034 5011034 G A MMP26 Missense_Mutation p.D86N 0.33 deleterious(0) benign(0.141) TCGA-D3-A8GI-06 11 5013524 5013524 G A MMP26 3'UTR 0.62 TCGA-D3-A8GI-06 11 5020857 5020857 C T OR51L1 Silent p.F215F 0.27 TCGA-D3-A8GI-06 11 5068254 5068254 C T OR52J3 Missense_Mutation p.R167C 0.22 deleterious(0.01) benign(0.192) TCGA-D3-A8GI-06 11 5079915 5079915 C T OR52E2 Missense_Mutation p.E315K 0.22 tolerated_low_confidence(0.6) benign(0.002) TCGA-D3-A8GI-06 11 5079916 5079916 C T OR52E2 Missense_Mutation p.M314I 0.22 tolerated_low_confidence(0.63) benign(0) TCGA-D3-A8GI-06 11 5079920 5079920 C T OR52E2 Missense_Mutation p.G313E 0.24 tolerated(0.51) benign(0.002) TCGA-D3-A8GI-06 11 51412181 51412181 G A OR4A5 Missense_Mutation p.S72F 0.23 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-D3-A8GI-06 11 5173510 5173510 C T OR52A1 Silent p.G30G 0.17 TCGA-D3-A8GI-06 11 5221176 5221176 G A OR51V1 Missense_Mutation p.S252F 0.13 deleterious(0) possibly_damaging(0.78) TCGA-D3-A8GI-06 11 5248202 5248202 C T HBB Missense_Mutation p.G17D 0.41 tolerated(0.09) benign(0.05) TCGA-D3-A8GI-06 11 5269710 5269710 C T HBG1 Missense_Mutation p.G108E 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 5289767 5289767 C T HBE1 Missense_Mutation p.E126K 0.39 tolerated(0.12) benign(0.061) TCGA-D3-A8GI-06 11 5322259 5322259 C T OR51B4 Silent p.G306G 0.54 TCGA-D3-A8GI-06 11 5322336 5322336 G A OR51B4 Missense_Mutation p.P281S 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 5344661 5344661 G A OR51B2 Silent p.I289I 0.47 TCGA-D3-A8GI-06 11 5344891 5344891 G A OR51B2 Missense_Mutation p.L213F 0.47 tolerated(0.37) benign(0.03) TCGA-D3-A8GI-06 11 5345133 5345133 G A OR51B2 Missense_Mutation p.S132F 0.47 deleterious(0.01) benign(0.114) TCGA-D3-A8GI-06 11 5345193 5345193 G A OR51B2 Missense_Mutation p.S112F 0.41 deleterious(0.01) benign(0.045) TCGA-D3-A8GI-06 11 5373536 5373536 C T OR51B6 Missense_Mutation p.P267S 0.48 tolerated(0.84) benign(0.315) TCGA-D3-A8GI-06 11 5443492 5443492 G A OR51Q1 Missense_Mutation p.G21E 0.53 deleterious(0.01) possibly_damaging(0.839) TCGA-D3-A8GI-06 11 5461798 5461798 C T HBE1 Intron 0.54 TCGA-D3-A8GI-06 11 55032589 55032589 G A TRIM48 Silent p.L86L 0.27 TCGA-D3-A8GI-06 11 55062981 55062981 C T TRIM51HP RNA 0.16 TCGA-D3-A8GI-06 11 55110739 55110739 G A OR4A16 Silent p.V21V 0.47 TCGA-D3-A8GI-06 11 55111552 55111552 G A OR4A16 Missense_Mutation p.M292I 0.58 tolerated_low_confidence(0.18) benign(0.027) TCGA-D3-A8GI-06 11 55135756 55135756 C T OR4A15 Missense_Mutation p.H133Y 0.28 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-D3-A8GI-06 11 5529960 5529960 G A UBQLN3 Missense_Mutation p.P277S 0.27 deleterious(0) possibly_damaging(0.807) TCGA-D3-A8GI-06 11 55321926 55321926 C T OR4C15 Silent p.F48F 0.21 TCGA-D3-A8GI-06 11 55322244 55322244 C T OR4C15 Silent p.L154L 0.50 TCGA-D3-A8GI-06 11 55322541 55322541 C T OR4C15 Silent p.V253V 0.53 TCGA-D3-A8GI-06 11 5536572 5536572 C T UBQLNL Missense_Mutation p.G367D 0.32 tolerated(0.23) benign(0.012) TCGA-D3-A8GI-06 11 55406282 55406282 G A OR4P4 Missense_Mutation p.G150E 0.40 deleterious(0.03) probably_damaging(0.981) TCGA-D3-A8GI-06 11 55563932 55563932 G A OR5D14 Missense_Mutation p.D301N 0.43 tolerated(0.16) benign(0.004) TCGA-D3-A8GI-06 11 55606987 55606987 C T OR5D16 Missense_Mutation p.H254Y 0.45 tolerated(0.09) benign(0.107) TCGA-D3-A8GI-06 11 55658676 55658676 G A TRIM51 Missense_Mutation p.M309I 0.43 tolerated(0.23) benign(0.002) TCGA-D3-A8GI-06 11 55658719 55658719 A G TRIM51 Missense_Mutation p.K324E 0.24 tolerated(0.2) benign(0.098) TCGA-D3-A8GI-06 11 55872882 55872882 C T OR8H2 Missense_Mutation p.R122C 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A8GI-06 11 55872985 55872985 C T OR8H2 Missense_Mutation p.S156F 0.31 deleterious(0.01) benign(0.443) TCGA-D3-A8GI-06 11 55873318 55873318 C T OR8H2 Missense_Mutation p.S267F 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A8GI-06 11 55890712 55890712 C T OR8H3 Silent p.L288L 0.25 TCGA-D3-A8GI-06 11 55905177 55905177 G A OR8J3 Silent p.F6F 0.50 TCGA-D3-A8GI-06 11 55927134 55927134 C T OR8K5 Silent p.L220L 0.50 TCGA-D3-A8GI-06 11 55927186 55927186 G A OR8K5 Missense_Mutation p.S203F 0.45 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-D3-A8GI-06 11 55944535 55944535 T A OR5J2 Missense_Mutation p.S148T 0.32 tolerated(0.11) possibly_damaging(0.644) TCGA-D3-A8GI-06 11 55999998 55999998 G A OR5T2 Missense_Mutation p.P222S 0.54 deleterious(0.03) possibly_damaging(0.856) TCGA-D3-A8GI-06 11 56020088 56020088 G A OR5T3 Missense_Mutation p.G138E 0.45 deleterious(0.01) possibly_damaging(0.696) TCGA-D3-A8GI-06 11 56043337 56043337 C T OR5T1 Missense_Mutation p.L75F 0.42 deleterious(0) possibly_damaging(0.882) TCGA-D3-A8GI-06 11 56058204 56058204 A C OR8H1 Missense_Mutation p.F112C 0.61 deleterious(0.02) benign(0.012) TCGA-D3-A8GI-06 11 56058503 56058503 G A OR8H1 Silent p.F12F 0.58 TCGA-D3-A8GI-06 11 56128572 56128572 C T OR8J1 Missense_Mutation p.P284S 0.51 deleterious(0.01) possibly_damaging(0.764) TCGA-D3-A8GI-06 11 56258340 56258340 G A OR5M8 Silent p.G169G 0.28 TCGA-D3-A8GI-06 11 56380880 56380880 C T OR5M1 Silent p.A33A 0.17 TCGA-D3-A8GI-06 11 56409513 56409513 G A OR5AP2 Missense_Mutation p.P135S 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 56409612 56409612 C T OR5AP2 Missense_Mutation p.G102R 0.45 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A8GI-06 11 56409636 56409636 C T OR5AP2 Missense_Mutation p.E94K 0.26 tolerated(0.46) benign(0.008) TCGA-D3-A8GI-06 11 56431284 56431284 G A OR5AR1 Silent p.G41G 0.23 TCGA-D3-A8GI-06 11 56431806 56431806 C T OR5AR1 Silent p.F215F 0.20 TCGA-D3-A8GI-06 11 5664539 5664539 C T TRIM34 Missense_Mutation p.S356F 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 5686655 5686655 G A TRIM5 Intron 0.31 TCGA-D3-A8GI-06 11 56954968 56954968 C T LRRC55 3'UTR 0.57 TCGA-D3-A8GI-06 11 56954971 56954971 C T LRRC55 3'UTR 0.31 TCGA-D3-A8GI-06 11 57100165 57100165 G A SSRP1 Silent p.I234I 0.23 TCGA-D3-A8GI-06 11 57102014 57102014 G C SSRP1 Missense_Mutation p.R55G 0.57 deleterious(0) possibly_damaging(0.867) TCGA-D3-A8GI-06 11 57319727 57319727 G A UBE2L6 3'UTR 0.55 TCGA-D3-A8GI-06 11 57506485 57506485 T C TMX2 Silent p.V196V 0.58 TCGA-D3-A8GI-06 11 57506486 57506486 G T TMX2 Nonsense_Mutation p.G197* 0.58 TCGA-D3-A8GI-06 11 57564054 57564054 C T CTNND1 Silent p.F182F 0.26 TCGA-D3-A8GI-06 11 5758549 5758549 C T OR56B1 Missense_Mutation p.S268L 0.59 tolerated(0.28) possibly_damaging(0.864) TCGA-D3-A8GI-06 11 5776054 5776054 G A OR52N4 Nonsense_Mutation p.W28* 0.56 TCGA-D3-A8GI-06 11 5776576 5776576 G A OR52N4 Silent p.L202L 0.13 TCGA-D3-A8GI-06 11 57886770 57886770 G A OR9I1 Silent p.I49I 0.53 TCGA-D3-A8GI-06 11 57958382 57958382 C T OR9Q2 Silent p.A140A 0.42 TCGA-D3-A8GI-06 11 57958867 57958867 G A OR9Q2 Missense_Mutation p.R302K 0.56 tolerated(0.95) benign(0.003) TCGA-D3-A8GI-06 11 57971400 57971400 G A OR1S2 Missense_Mutation p.S85F 0.25 tolerated(0.08) benign(0.039) TCGA-D3-A8GI-06 11 57982447 57982447 C T OR1S1 Silent p.A77A 0.28 TCGA-D3-A8GI-06 11 57983071 57983071 G A OR1S1 Silent p.K285K 0.21 TCGA-D3-A8GI-06 11 57983188 57983188 C T OR1S1 Silent p.S324S 0.21 TCGA-D3-A8GI-06 11 5799144 5799144 C T OR52N5 Missense_Mutation p.D241N 0.59 deleterious(0.01) probably_damaging(0.952) TCGA-D3-A8GI-06 11 5799384 5799384 C T OR52N5 Missense_Mutation p.G161S 0.75 tolerated(0.36) benign(0.1) TCGA-D3-A8GI-06 11 58170132 58170132 C A OR5B3 Missense_Mutation p.G251W 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 58206849 58206849 C T OR5B12 Missense_Mutation p.R259Q 0.55 tolerated_low_confidence(1) benign(0.002) TCGA-D3-A8GI-06 11 58207458 58207458 G T OR5B12 Missense_Mutation p.P56H 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 58207500 58207500 C T OR5B12 Missense_Mutation p.G42E 0.22 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-D3-A8GI-06 11 5841694 5841694 G A OR52N2 Silent p.G43G 0.24 TCGA-D3-A8GI-06 11 58477137 58477137 C T GLYAT 3'UTR 0.39 TCGA-D3-A8GI-06 11 58602163 58602163 C T GLYATL2 Silent p.E208E 0.27 TCGA-D3-A8GI-06 11 58602244 58602244 G A GLYATL2 Silent p.A181A 0.21 TCGA-D3-A8GI-06 11 58604517 58604517 C T GLYATL2 Missense_Mutation p.M149I 0.34 tolerated(0.39) benign(0.002) TCGA-D3-A8GI-06 11 5862852 5862852 C T OR52E6 Silent p.K92K 0.28 TCGA-D3-A8GI-06 11 58722333 58722333 G A GLYATL1 Missense_Mutation p.E124K 0.32 deleterious(0.03) benign(0.134) TCGA-D3-A8GI-06 11 58723506 58723506 G A GLYATL1 3'UTR 0.65 TCGA-D3-A8GI-06 11 59271420 59271420 G A OR4D11 Missense_Mutation p.M124I 0.57 tolerated(0.36) benign(0.001) TCGA-D3-A8GI-06 11 59283087 59283087 G A OR4D9 Silent p.R234R 0.23 TCGA-D3-A8GI-06 11 5968599 5968599 C T OR56A3 Missense_Mutation p.T8I 0.22 deleterious(0) benign(0.004) TCGA-D3-A8GI-06 11 59814668 59814668 C T OOSP2 3'UTR 0.54 TCGA-D3-A8GI-06 11 60059777 60059777 G A MS4A4A Missense_Mutation p.G41R 0.55 tolerated(0.09) benign(0.275) TCGA-D3-A8GI-06 11 6007406 6007406 C T OR52L1 Missense_Mutation p.R252Q 0.50 tolerated(0.1) benign(0.143) TCGA-D3-A8GI-06 11 60075743 60075743 C T MS4A4A 3'UTR 0.50 TCGA-D3-A8GI-06 11 60482827 60482827 C T MS4A8 Silent p.I231I 0.09 TCGA-D3-A8GI-06 11 60707052 60707052 C T SLC15A3 Silent p.Q445Q 0.61 TCGA-D3-A8GI-06 11 60971585 60971585 C T PGA3 Silent p.P21P 0.23 TCGA-D3-A8GI-06 11 6129347 6129347 C T OR56B4 Silent p.F113F 0.27 TCGA-D3-A8GI-06 11 61404350 61404350 G A RPLP0P2 RNA 0.19 TCGA-D3-A8GI-06 11 6190684 6190684 G A OR52B2 Silent p.P291P 0.29 TCGA-D3-A8GI-06 11 61976155 61976155 C T SCGB2A1 5'UTR 0.55 TCGA-D3-A8GI-06 11 61977901 61977901 C T SCGB2A1 Silent p.L24L 0.62 TCGA-D3-A8GI-06 11 61977902 61977902 C T SCGB2A1 Silent p.L25L 0.62 TCGA-D3-A8GI-06 11 62295920 62295920 G A AHNAK Missense_Mutation p.S1990F 0.55 probably_damaging(0.999) TCGA-D3-A8GI-06 11 62359016 62359016 C T TUT1 Missense_Mutation p.R19Q 0.45 deleterious_low_confidence(0) benign(0.034) TCGA-D3-A8GI-06 11 62394095 62394095 G A GANAB Missense_Mutation p.S842L 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 11 62564709 62564709 C T NXF1 Missense_Mutation p.G375E 0.36 tolerated(1) benign(0.031) TCGA-D3-A8GI-06 11 62607074 62607074 C T WDR74 5'UTR 0.56 TCGA-D3-A8GI-06 11 62677792 62677792 G A CHRM1 Missense_Mutation p.R261C 0.54 tolerated(0.05) benign(0) TCGA-D3-A8GI-06 11 62749363 62749363 G A SLC22A6 Silent p.L250L 0.58 TCGA-D3-A8GI-06 11 62782377 62782377 G A SLC22A8 Silent p.F18F 0.57 TCGA-D3-A8GI-06 11 62995988 62995988 G T SLC22A25 Missense_Mutation p.L151I 0.28 tolerated(0.62) benign(0.1) TCGA-D3-A8GI-06 11 63078672 63078672 G A SLC22A10 3'UTR 0.38 TCGA-D3-A8GI-06 11 63320433 63320433 G A HRASLS2 3'UTR 0.53 TCGA-D3-A8GI-06 11 63342301 63342301 G A PLA2G16 3'UTR 0.75 TCGA-D3-A8GI-06 11 63357683 63357683 G A PLA2G16 Silent p.I92I 0.27 TCGA-D3-A8GI-06 11 63585824 63585824 C T C11orf84 Silent p.P198P 0.31 TCGA-D3-A8GI-06 11 63682263 63682263 T A RCOR2 Missense_Mutation p.K115M 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 64000057 64000057 C G DNAJC4 Silent p.V112V 0.26 TCGA-D3-A8GI-06 11 64004932 64004932 C T VEGFB Missense_Mutation p.P151S 0.31 tolerated(0.07) benign(0.374) TCGA-D3-A8GI-06 11 64053936 64053936 C T GPR137 Intron 0.35 TCGA-D3-A8GI-06 11 64120963 64120963 G A CCDC88B Silent p.E1276E 0.23 TCGA-D3-A8GI-06 11 64436066 64436066 G A NRXN2 Missense_Mutation p.S403L 0.56 tolerated(0.09) benign(0.069) TCGA-D3-A8GI-06 11 64457898 64457898 C T NRXN2 Missense_Mutation p.D277N 0.56 tolerated_low_confidence(0.12) benign(0) TCGA-D3-A8GI-06 11 64514190 64514190 C T PYGM Missense_Mutation p.E824K 0.55 tolerated(0.07) benign(0.326) TCGA-D3-A8GI-06 11 6452397 6452397 G A HPX 3'UTR 0.37 TCGA-D3-A8GI-06 11 64533538 64533538 G A SF1 Intron 0.52 TCGA-D3-A8GI-06 11 64535653 64535653 G A SF1 Silent p.S456S 0.60 TCGA-D3-A8GI-06 11 64537066 64537066 C T SF1 Silent p.K290K 0.33 TCGA-D3-A8GI-06 11 64594023 64594023 C T CDC42BPG Silent p.K1506K 0.50 TCGA-D3-A8GI-06 11 64717243 64717243 C T C11orf85 Missense_Mutation p.M107I 0.27 tolerated(0.11) benign(0.001) TCGA-D3-A8GI-06 11 64888518 64888518 G A FAU Intron 0.51 TCGA-D3-A8GI-06 11 64938807 64938807 C T SPDYC Silent p.C12C 0.51 TCGA-D3-A8GI-06 11 65373447 65373447 G A MAP3K11 Missense_Mutation p.S570F 0.35 deleterious(0) benign(0.261) TCGA-D3-A8GI-06 11 65396143 65396143 C T PCNXL3 Silent p.F1260F 0.51 TCGA-D3-A8GI-06 11 65638693 65638693 G A EFEMP2 Missense_Mutation p.P101L 0.60 deleterious(0.02) benign(0.021) TCGA-D3-A8GI-06 11 65780326 65780326 G A CST6 Silent p.T90T 0.26 TCGA-D3-A8GI-06 11 65793146 65793146 G A CATSPER1 Silent p.H235H 0.62 TCGA-D3-A8GI-06 11 65793531 65793531 G A CATSPER1 Missense_Mutation p.S107F 0.28 tolerated(0.06) benign(0.415) TCGA-D3-A8GI-06 11 65823015 65823015 C T SF3B2 Missense_Mutation p.H170Y 0.26 deleterious_low_confidence(0.01) benign(0.021) TCGA-D3-A8GI-06 11 65824828 65824828 T G SF3B2 Silent p.P253P 0.33 TCGA-D3-A8GI-06 11 6592189 6592189 G A DNHD1 Missense_Mutation p.G4483S 0.69 possibly_damaging(0.543) TCGA-D3-A8GI-06 11 6592190 6592190 G A DNHD1 Missense_Mutation p.G4483D 0.69 benign(0.034) TCGA-D3-A8GI-06 11 66009003 66009003 G A PACS1 Silent p.S845S 0.18 TCGA-D3-A8GI-06 11 66039682 66039682 C T RAB1B Nonsense_Mutation p.R48* 0.26 TCGA-D3-A8GI-06 11 66192227 66192227 C T NPAS4 Silent p.F622F 0.58 TCGA-D3-A8GI-06 11 66262722 66262722 C T DPP3 Missense_Mutation p.P479S 0.25 deleterious(0.02) possibly_damaging(0.635) TCGA-D3-A8GI-06 11 66264855 66264855 C T DPP3 Silent p.S595S 0.21 TCGA-D3-A8GI-06 11 66331446 66331446 G A CTSF Silent p.A471A 0.67 TCGA-D3-A8GI-06 11 66359266 66359266 C T CCDC87 Silent p.E407E 0.60 TCGA-D3-A8GI-06 11 66472465 66472465 G A SPTBN2 Missense_Mutation p.A761V 0.48 tolerated(0.1) benign(0.304) TCGA-D3-A8GI-06 11 66571660 66571660 C T C11orf80 Missense_Mutation p.S346F 0.60 tolerated(0.14) benign(0.005) TCGA-D3-A8GI-06 11 66631263 66631263 G A PC Silent p.F450F 0.55 TCGA-D3-A8GI-06 11 66813324 66813324 C T SYT12 Silent p.F356F 0.61 TCGA-D3-A8GI-06 11 67067568 67067568 C A ANKRD13D Silent p.P349P 0.15 TCGA-D3-A8GI-06 11 67174327 67174327 C T TBC1D10C Silent p.F226F 0.38 TCGA-D3-A8GI-06 11 67379851 67379851 C T NDUFV1 Silent p.I439I 0.56 TCGA-D3-A8GI-06 11 67407014 67407014 G A TBX10 5'UTR 0.47 TCGA-D3-A8GI-06 11 67407015 67407015 G A TBX10 5'UTR 0.50 TCGA-D3-A8GI-06 11 67412540 67412540 C T ACY3 Missense_Mutation p.D204N 0.26 deleterious(0.02) possibly_damaging(0.904) TCGA-D3-A8GI-06 11 6807041 6807041 T C OR2AG1 Missense_Mutation p.M258T 0.53 tolerated(1) benign(0.119) TCGA-D3-A8GI-06 11 6807042 6807042 G A OR2AG1 Missense_Mutation p.M258I 0.52 tolerated(0.21) benign(0.032) TCGA-D3-A8GI-06 11 68549423 68549423 G A CPT1A Missense_Mutation p.P390S 0.34 tolerated(0.14) benign(0.051) TCGA-D3-A8GI-06 11 68853168 68853168 G T TPCN2 Missense_Mutation p.C623F 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 68853172 68853172 G A TPCN2 Silent p.G624G 0.26 TCGA-D3-A8GI-06 11 6898784 6898784 G A OR10A4 Silent p.L302L 0.53 TCGA-D3-A8GI-06 11 69588128 69588128 C T FGF4 Silent p.G190G 0.25 TCGA-D3-A8GI-06 11 70028637 70028637 C T ANO1 Silent p.F811F 0.33 TCGA-D3-A8GI-06 11 70189897 70189897 C T PPFIA1 Silent p.L610L 0.65 TCGA-D3-A8GI-06 11 70506012 70506012 G A SHANK2 Missense_Mutation p.A662V 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 7065063 7065063 C T NLRP14 Silent p.F602F 0.28 TCGA-D3-A8GI-06 11 7110982 7110982 G A RBMXL2 Missense_Mutation p.D211N 0.75 deleterious(0.05) benign(0.002) TCGA-D3-A8GI-06 11 71932097 71932097 C T FOLR2 Nonsense_Mutation p.Q112* 0.17 TCGA-D3-A8GI-06 11 72404511 72404511 G A ARAP1 Silent p.S1271S 0.69 TCGA-D3-A8GI-06 11 73074349 73074349 C T ARHGEF17 Missense_Mutation p.P1699S 0.72 tolerated(0.14) benign(0.01) TCGA-D3-A8GI-06 11 73074350 73074350 C T ARHGEF17 Missense_Mutation p.P1699L 0.72 deleterious(0.05) benign(0.22) TCGA-D3-A8GI-06 11 73105659 73105659 C T RELT Missense_Mutation p.S309F 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 11 73627595 73627595 C T PAAF1 Silent p.F275F 0.32 TCGA-D3-A8GI-06 11 73809206 73809206 G A C2CD3 Nonsense_Mutation p.Q943* 0.44 TCGA-D3-A8GI-06 11 73820112 73820112 G A C2CD3 Silent p.F643F 0.60 TCGA-D3-A8GI-06 11 74168332 74168332 G A KCNE3 Missense_Mutation p.H93Y 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 11 74799928 74799928 G A OR2AT4 Silent p.I277I 0.24 TCGA-D3-A8GI-06 11 74800691 74800691 G A OR2AT4 Missense_Mutation p.S23F 0.51 deleterious(0.01) benign(0.031) TCGA-D3-A8GI-06 11 74914364 74914364 G A SLCO2B1 Missense_Mutation p.S614N 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 11 74915493 74915493 C T SLCO2B1 Silent p.F666F 0.57 TCGA-D3-A8GI-06 11 75299162 75299162 C T MAP6 Missense_Mutation p.D462N 0.62 deleterious_low_confidence(0.03) possibly_damaging(0.761) TCGA-D3-A8GI-06 11 7530971 7530971 G A OLFML1 Missense_Mutation p.G254E 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 75431208 75431208 C T MOGAT2 Missense_Mutation p.P88L 0.24 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GI-06 11 75507407 75507407 A G DGAT2 Missense_Mutation p.N155S 0.55 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 11 75902679 75902679 G A WNT11 Silent p.L273L 0.56 TCGA-D3-A8GI-06 11 76371318 76371318 G A LRRC32 Missense_Mutation p.S440F 0.67 tolerated(0.11) benign(0.152) TCGA-D3-A8GI-06 11 76814242 76814242 G A OMP Silent p.E119E 0.14 TCGA-D3-A8GI-06 11 76891509 76891509 G T MYO7A Missense_Mutation p.E892D 0.50 tolerated(0.35) benign(0.435) TCGA-D3-A8GI-06 11 76892534 76892534 G A MYO7A Missense_Mutation p.E935K 0.44 tolerated(0.07) benign(0.2) TCGA-D3-A8GI-06 11 76924017 76924017 C T MYO7A Silent p.F2125F 0.78 TCGA-D3-A8GI-06 11 77635893 77635893 A G INTS4 Missense_Mutation p.C473R 0.59 tolerated(0.33) benign(0.131) TCGA-D3-A8GI-06 11 78369676 78369676 C T TENM4 Silent p.V2579V 0.58 TCGA-D3-A8GI-06 11 7846934 7846934 C T OR5P3 Missense_Mutation p.E196K 0.23 tolerated(0.42) benign(0.279) TCGA-D3-A8GI-06 11 7949397 7949397 C T OR10A6 Silent p.K271K 0.50 TCGA-D3-A8GI-06 11 7949693 7949693 C T OR10A6 Missense_Mutation p.E173K 0.26 tolerated(0.86) benign(0.008) TCGA-D3-A8GI-06 11 7981494 7981494 C T NLRP10 Missense_Mutation p.M555I 0.22 tolerated(1) benign(0) TCGA-D3-A8GI-06 11 7981881 7981881 G A NLRP10 Silent p.F426F 0.51 TCGA-D3-A8GI-06 11 7982690 7982690 C T NLRP10 Missense_Mutation p.D157N 0.26 tolerated(0.24) benign(0.091) TCGA-D3-A8GI-06 11 8190412 8190412 C T RIC3 Splice_Site p.X42_splice 0.48 TCGA-D3-A8GI-06 11 8190413 8190413 C T RIC3 Missense_Mutation p.G42R 0.48 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A8GI-06 11 82924082 82924082 C T ANKRD42 Intron 0.56 TCGA-D3-A8GI-06 11 83673982 83673982 G A DLG2 Missense_Mutation p.P429L 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A8GI-06 11 8435182 8435182 T C STK33 Missense_Mutation p.K402E 0.45 deleterious(0.01) probably_damaging(0.919) TCGA-D3-A8GI-06 11 8496286 8496286 G A STK33 Missense_Mutation p.S56L 0.57 tolerated_low_confidence(0.22) benign(0.004) TCGA-D3-A8GI-06 11 85436310 85436310 C T SYTL2 Missense_Mutation p.R397K 0.24 tolerated(1) benign(0.003) TCGA-D3-A8GI-06 11 85576210 85576210 G A CCDC83 Missense_Mutation p.G15E 0.31 tolerated(0.14) benign(0.034) TCGA-D3-A8GI-06 11 85630509 85630509 C T CCDC83 Missense_Mutation p.P431S 0.27 tolerated(0.48) benign(0.377) TCGA-D3-A8GI-06 11 86125849 86125849 G A CCDC81 Silent p.A470A 0.48 TCGA-D3-A8GI-06 11 86778798 86778798 C T TMEM135 Silent p.I68I 0.30 TCGA-D3-A8GI-06 11 8751725 8751725 G A ST5 Missense_Mutation p.S371F 0.57 tolerated(0.71) benign(0.172) TCGA-D3-A8GI-06 11 88027551 88027551 G A CTSC Missense_Mutation p.R339C 0.29 deleterious(0.03) possibly_damaging(0.661) TCGA-D3-A8GI-06 11 88027600 88027600 G T CTSC Missense_Mutation p.F322L 0.61 tolerated(0.23) benign(0.094) TCGA-D3-A8GI-06 11 88042475 88042475 C T CTSC Missense_Mutation p.R166K 0.61 tolerated(0.25) benign(0.003) TCGA-D3-A8GI-06 11 88780477 88780477 G A GRM5 Silent p.F188F 0.12 TCGA-D3-A8GI-06 11 89420582 89420582 C T FOLH1B RNA 0.51 TCGA-D3-A8GI-06 11 89424112 89424112 G A FOLH1B RNA 0.20 TCGA-D3-A8GI-06 11 8942926 8942926 T C C11orf16 Silent p.E447E 0.40 TCGA-D3-A8GI-06 11 89431620 89431620 G A FOLH1B RNA 0.20 TCGA-D3-A8GI-06 11 89536910 89536910 G A TRIM49 Missense_Mutation p.H155Y 0.11 tolerated(0.19) benign(0.004) TCGA-D3-A8GI-06 11 89868809 89868809 G A NAALAD2 Missense_Mutation p.M55I 0.56 tolerated(0.29) benign(0.422) TCGA-D3-A8GI-06 11 89896507 89896507 G A NAALAD2 Missense_Mutation p.D369N 0.65 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 89911096 89911096 G A NAALAD2 Missense_Mutation p.D557N 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 11 89948383 89948383 T C CHORDC1 Missense_Mutation p.K44E 0.43 deleterious(0) possibly_damaging(0.864) TCGA-D3-A8GI-06 11 92086190 92086190 G A FAT3 Silent p.V304V 0.28 TCGA-D3-A8GI-06 11 92088251 92088251 C T FAT3 Silent p.A991A 0.60 TCGA-D3-A8GI-06 11 92495114 92495114 C T FAT3 Silent p.F1254F 0.35 TCGA-D3-A8GI-06 11 92532300 92532300 C T FAT3 Missense_Mutation p.P2041S 0.42 benign(0.192) TCGA-D3-A8GI-06 11 92532848 92532848 C T FAT3 Silent p.I2223I 0.25 TCGA-D3-A8GI-06 11 92534372 92534372 G A FAT3 Silent p.R2731R 0.67 TCGA-D3-A8GI-06 11 92534981 92534981 G A FAT3 Silent p.K2934K 0.34 TCGA-D3-A8GI-06 11 92592407 92592407 C T FAT3 Silent p.F3859F 0.13 TCGA-D3-A8GI-06 11 92613964 92613964 C T FAT3 Silent p.F4065F 0.26 TCGA-D3-A8GI-06 11 92615929 92615929 G A FAT3 Missense_Mutation p.E4103K 0.62 benign(0.311) TCGA-D3-A8GI-06 11 93797519 93797519 G A HEPHL1 Silent p.G217G 0.50 TCGA-D3-A8GI-06 11 93797529 93797529 G A HEPHL1 Missense_Mutation p.D221N 0.47 tolerated(0.31) probably_damaging(0.928) TCGA-D3-A8GI-06 11 94129651 94129651 T C GPR83 Missense_Mutation p.M143V 0.56 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A8GI-06 11 985474 985474 C T AP2A2 Missense_Mutation p.T285I 0.45 tolerated(0.06) benign(0.236) TCGA-D3-A8GI-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.18 tolerated(0.09) possibly_damaging(0.653) TCGA-D3-A8GI-06 12 100646266 100646266 C T DEPDC4 3'UTR 0.65 TCGA-D3-A8GI-06 12 100957306 100957306 C A NR1H4 3'Flank 0.24 TCGA-D3-A8GI-06 12 10133239 10133239 C T CLEC12A Silent p.F156F 0.26 TCGA-D3-A8GI-06 12 101413866 101413866 C T ANO4 Silent p.I228I 0.24 TCGA-D3-A8GI-06 12 101442140 101442140 G A ANO4 Missense_Mutation p.G390R 0.24 tolerated(0.37) possibly_damaging(0.881) TCGA-D3-A8GI-06 12 101504268 101504268 C T ANO4 Nonsense_Mutation p.R711* 0.29 TCGA-D3-A8GI-06 12 101520788 101520788 C T ANO4 Silent p.L901L 0.21 TCGA-D3-A8GI-06 12 101551020 101551020 G A SLC5A8 3'UTR 0.23 TCGA-D3-A8GI-06 12 101680224 101680224 C T UTP20 Missense_Mutation p.S151L 0.54 deleterious(0.03) benign(0.194) TCGA-D3-A8GI-06 12 101714708 101714708 C T UTP20 Missense_Mutation p.P970S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 102057218 102057218 C T MYBPC1 Missense_Mutation p.P721S 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 103984798 103984798 C T STAB2 Nonsense_Mutation p.R69* 0.26 TCGA-D3-A8GI-06 12 104044333 104044333 G A STAB2 Missense_Mutation p.D412N 0.30 tolerated(0.96) benign(0.017) TCGA-D3-A8GI-06 12 104081964 104081964 G A STAB2 Missense_Mutation p.E1006K 0.23 tolerated(0.06) benign(0.016) TCGA-D3-A8GI-06 12 104102233 104102233 C T STAB2 Missense_Mutation p.H1403Y 0.25 deleterious(0.02) probably_damaging(0.926) TCGA-D3-A8GI-06 12 104126814 104126814 C T STAB2 Missense_Mutation p.P1772S 0.52 deleterious(0.05) probably_damaging(0.956) TCGA-D3-A8GI-06 12 10531194 10531194 G A KLRK1 Nonsense_Mutation p.Q130* 0.51 TCGA-D3-A8GI-06 12 10541439 10541439 G A KLRK1 5'UTR 0.53 TCGA-D3-A8GI-06 12 106461190 106461190 G A NUAK1 Missense_Mutation p.S459L 0.24 tolerated(0.1) benign(0.098) TCGA-D3-A8GI-06 12 106890608 106890608 G A POLR3B Missense_Mutation p.G966S 0.56 tolerated(0.1) possibly_damaging(0.531) TCGA-D3-A8GI-06 12 107113808 107113808 C T RFX4 Silent p.T412T 0.61 TCGA-D3-A8GI-06 12 108043135 108043135 G A BTBD11 Intron 0.15 TCGA-D3-A8GI-06 12 108686177 108686177 G A CMKLR1 Missense_Mutation p.S188F 0.52 tolerated(0.71) benign(0.063) TCGA-D3-A8GI-06 12 109017400 109017400 G A SELPLG Silent p.A244A 0.58 TCGA-D3-A8GI-06 12 109182868 109182868 G A SSH1 Silent p.F682F 0.20 TCGA-D3-A8GI-06 12 10954830 10954830 A G TAS2R7 Missense_Mutation p.F114L 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GI-06 12 109680346 109680346 C T ACACB Silent p.A1709A 0.19 TCGA-D3-A8GI-06 12 109936071 109936071 C T UBE3B Missense_Mutation p.R285C 0.56 deleterious(0.03) benign(0.28) TCGA-D3-A8GI-06 12 110206866 110206866 C T FAM222A Missense_Mutation p.R378W 0.62 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 12 110385069 110385069 G A GIT2 Missense_Mutation p.P545S 0.41 tolerated(0.15) possibly_damaging(0.839) TCGA-D3-A8GI-06 12 112228246 112228246 C T ALDH2 Silent p.F187F 0.33 TCGA-D3-A8GI-06 12 112647925 112647925 G A HECTD4 Silent p.F2441F 0.64 TCGA-D3-A8GI-06 12 113285505 113285505 C T RPH3A Nonsense_Mutation p.Q30* 0.40 TCGA-D3-A8GI-06 12 11339140 11339140 A C TAS2R42 Missense_Mutation p.I135R 0.54 deleterious(0.01) benign(0.18) TCGA-D3-A8GI-06 12 113405242 113405242 C T OAS3 Silent p.S903S 0.42 TCGA-D3-A8GI-06 12 113445625 113445625 G A OAS2 Missense_Mutation p.G591D 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 113554888 113554888 C T RASAL1 Missense_Mutation p.E241K 0.24 tolerated(0.12) benign(0.272) TCGA-D3-A8GI-06 12 113596951 113596951 G A CCDC42B 3'UTR 0.50 TCGA-D3-A8GI-06 12 113826336 113826336 C T PLBD2 Missense_Mutation p.P559S 0.58 deleterious(0.01) possibly_damaging(0.706) TCGA-D3-A8GI-06 12 11420863 11420863 C T PRB3 Missense_Mutation p.G107E 0.22 deleterious(0) unknown(0) TCGA-D3-A8GI-06 12 11461690 11461690 C T PRB4 Missense_Mutation p.G76E 0.21 tolerated_low_confidence(0.2) unknown(0) TCGA-D3-A8GI-06 12 11506313 11506313 C T PRB1 Missense_Mutation p.G109R 0.31 tolerated_low_confidence(0.24) unknown(0) TCGA-D3-A8GI-06 12 115117767 115117767 A G TBX3 Missense_Mutation p.F223S 0.55 tolerated_low_confidence(0.09) benign(0.017) TCGA-D3-A8GI-06 12 115120762 115120762 C T TBX3 Missense_Mutation p.G82R 0.35 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GI-06 12 11546431 11546431 G A PRB2 Missense_Mutation p.P194L 0.44 tolerated(0.07) unknown(0) TCGA-D3-A8GI-06 12 117612523 117612523 G A FBXO21 Silent p.I224I 0.47 TCGA-D3-A8GI-06 12 117662930 117662930 G A NOS1 Silent p.F1273F 0.60 TCGA-D3-A8GI-06 12 117665301 117665301 G A NOS1 Missense_Mutation p.S1218F 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 117696204 117696204 C T NOS1 Silent p.R843R 0.32 TCGA-D3-A8GI-06 12 117715804 117715804 G T NOS1 Missense_Mutation p.P542T 0.54 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GI-06 12 117768933 117768933 G A NOS1 5'Flank 0.22 TCGA-D3-A8GI-06 12 117977568 117977568 G A KSR2 Missense_Mutation p.P548L 0.57 deleterious(0.01) possibly_damaging(0.742) TCGA-D3-A8GI-06 12 118198921 118198921 G A KSR2 Missense_Mutation p.S294F 0.18 deleterious(0.02) benign(0.26) TCGA-D3-A8GI-06 12 118405942 118405942 C T KSR2 Missense_Mutation p.G40E 0.54 deleterious(0) possibly_damaging(0.79) TCGA-D3-A8GI-06 12 119563255 119563255 G A SRRM4 Silent p.S195S 0.51 TCGA-D3-A8GI-06 12 119568589 119568589 C T SRRM4 Missense_Mutation p.P241S 0.13 tolerated_low_confidence(0.33) benign(0.412) TCGA-D3-A8GI-06 12 119588984 119588984 C T SRRM4 Silent p.S413S 0.53 TCGA-D3-A8GI-06 12 119592110 119592110 G A SRRM4 Missense_Mutation p.R485Q 0.18 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-D3-A8GI-06 12 119909901 119909901 G A CCDC60 Silent p.E91E 0.29 TCGA-D3-A8GI-06 12 119916931 119916931 G A CCDC60 Missense_Mutation p.G125E 0.59 tolerated(0.28) benign(0.009) TCGA-D3-A8GI-06 12 119954445 119954445 G A CCDC60 Missense_Mutation p.E301K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 12 119978426 119978426 G A CCDC60 Missense_Mutation p.R520Q 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 121431396 121431396 G A HNF1A Silent p.R200R 0.67 TCGA-D3-A8GI-06 12 121431979 121431979 C T HNF1A Silent p.I242I 0.58 TCGA-D3-A8GI-06 12 121471539 121471539 G A OASL Missense_Mutation p.S69F 0.61 deleterious(0) possibly_damaging(0.824) TCGA-D3-A8GI-06 12 122398510 122398510 C T WDR66 Missense_Mutation p.A718V 0.34 tolerated(0.09) benign(0.196) TCGA-D3-A8GI-06 12 122612484 122612484 C A MLXIP Missense_Mutation p.S192Y 0.54 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 12 122625575 122625575 C T MLXIP Silent p.H861H 0.18 TCGA-D3-A8GI-06 12 122625576 122625576 C T MLXIP Missense_Mutation p.R862W 0.16 deleterious(0) possibly_damaging(0.614) TCGA-D3-A8GI-06 12 122674904 122674904 G A LRRC43 Missense_Mutation p.S297N 0.24 tolerated(0.1) benign(0.039) TCGA-D3-A8GI-06 12 122685355 122685355 C T LRRC43 Silent p.I561I 0.19 TCGA-D3-A8GI-06 12 122690891 122690891 C T B3GNT4 Silent p.C31C 0.10 TCGA-D3-A8GI-06 12 122821274 122821274 G A CLIP1 Missense_Mutation p.L825F 0.62 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 12 123098224 123098224 C T KNTC1 Silent p.I1931I 0.59 TCGA-D3-A8GI-06 12 123200091 123200091 C T HCAR3 3'UTR 0.45 TCGA-D3-A8GI-06 12 123200676 123200676 G A HCAR3 Silent p.I203I 0.15 TCGA-D3-A8GI-06 12 123200866 123200866 G A HCAR3 Missense_Mutation p.S140F 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 123497272 123497272 A C PITPNM2 Missense_Mutation p.C101W 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 124081200 124081200 C T TMED2 Missense_Mutation p.A177V 0.26 deleterious(0.02) benign(0.098) TCGA-D3-A8GI-06 12 124285916 124285916 C T DNAH10 Missense_Mutation p.H733Y 0.23 benign(0.013) TCGA-D3-A8GI-06 12 124317724 124317724 G A DNAH10 Missense_Mutation p.G1419S 0.35 probably_damaging(0.977) TCGA-D3-A8GI-06 12 124335567 124335567 G A DNAH10 Missense_Mutation p.D1961N 0.67 probably_damaging(0.983) TCGA-D3-A8GI-06 12 124349203 124349203 G A DNAH10 Missense_Mutation p.D2206N 0.51 probably_damaging(1) TCGA-D3-A8GI-06 12 124387605 124387605 G A DNAH10 Missense_Mutation p.E3136K 0.31 possibly_damaging(0.483) TCGA-D3-A8GI-06 12 124798810 124798810 C T FAM101A Silent p.T49T 0.26 TCGA-D3-A8GI-06 12 124862862 124862862 G A NCOR2 Silent p.F696F 0.25 TCGA-D3-A8GI-06 12 125437078 125437078 G A DHX37 Missense_Mutation p.P912S 0.13 deleterious(0.01) possibly_damaging(0.817) TCGA-D3-A8GI-06 12 125441650 125441650 G A DHX37 Missense_Mutation p.S730F 0.50 deleterious(0) possibly_damaging(0.702) TCGA-D3-A8GI-06 12 125834288 125834288 C T TMEM132B Missense_Mutation p.P115S 0.57 tolerated(0.44) benign(0.234) TCGA-D3-A8GI-06 12 126138710 126138710 G T TMEM132B Missense_Mutation p.L897F 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 128899855 128899855 G A TMEM132C Missense_Mutation p.E222K 0.38 deleterious(0.04) benign(0.373) TCGA-D3-A8GI-06 12 129558854 129558854 C T TMEM132D Missense_Mutation p.E956K 0.54 tolerated(0.26) possibly_damaging(0.596) TCGA-D3-A8GI-06 12 130919384 130919384 C T RIMBP2 Silent p.G699G 0.24 TCGA-D3-A8GI-06 12 130919404 130919404 G A RIMBP2 Silent p.L693L 0.25 TCGA-D3-A8GI-06 12 130921579 130921579 C T RIMBP2 Missense_Mutation p.M621I 0.19 tolerated(0.46) benign(0) TCGA-D3-A8GI-06 12 130926661 130926661 G A RIMBP2 Silent p.S395S 0.59 TCGA-D3-A8GI-06 12 130926787 130926787 G A RIMBP2 Silent p.L353L 0.15 TCGA-D3-A8GI-06 12 130929776 130929776 G A RIMBP2 Missense_Mutation p.A190V 0.64 tolerated(0.09) probably_damaging(1) TCGA-D3-A8GI-06 12 131451079 131451079 G A GPR133 Missense_Mutation p.D59N 0.50 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-D3-A8GI-06 12 13208706 13208706 C T KIAA1467 Missense_Mutation p.L87F 0.25 deleterious(0.03) probably_damaging(0.984) TCGA-D3-A8GI-06 12 132398941 132398941 C T ULK1 Missense_Mutation p.P431L 0.71 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 133198339 133198339 G A P2RX2 Silent p.L425L 0.26 TCGA-D3-A8GI-06 12 133384840 133384840 G A GOLGA3 Missense_Mutation p.S272F 0.24 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-D3-A8GI-06 12 13715825 13715825 C T GRIN2B Silent p.G1449G 0.46 TCGA-D3-A8GI-06 12 13828708 13828708 G A GRIN2B Missense_Mutation p.L366F 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 12 14018993 14018993 G A GRIN2B Silent p.I50I 0.21 TCGA-D3-A8GI-06 12 14695212 14695212 G A PLBD1 Missense_Mutation p.H117Y 0.27 deleterious(0.04) probably_damaging(0.978) TCGA-D3-A8GI-06 12 14765964 14765964 G A GUCY2C 3'UTR 0.22 TCGA-D3-A8GI-06 12 14959574 14959574 C T SMCO3 Missense_Mutation p.R14K 0.56 deleterious(0) benign(0.01) TCGA-D3-A8GI-06 12 15262134 15262134 C T RERG Silent p.R170R 0.28 TCGA-D3-A8GI-06 12 15262135 15262135 C A RERG Missense_Mutation p.R170L 0.27 deleterious(0.01) possibly_damaging(0.58) TCGA-D3-A8GI-06 12 15656964 15656964 C T PTPRO Nonsense_Mutation p.R410* 0.12 TCGA-D3-A8GI-06 12 1755397 1755397 G A WNT5B Silent p.V353V 0.29 TCGA-D3-A8GI-06 12 18852843 18852843 G A PLCZ1 Silent p.V353V 0.58 TCGA-D3-A8GI-06 12 18854659 18854659 C T PLCZ1 Missense_Mutation p.E306K 0.18 tolerated(0.09) benign(0.115) TCGA-D3-A8GI-06 12 18891609 18891609 G A CAPZA3 Missense_Mutation p.G136E 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 18891854 18891854 C T CAPZA3 Nonsense_Mutation p.Q218* 0.25 TCGA-D3-A8GI-06 12 1965187 1965187 C T CACNA2D4 Missense_Mutation p.D715N 0.17 tolerated(0.33) benign(0.006) TCGA-D3-A8GI-06 12 1983770 1983770 C A CACNA2D4 Silent p.G626G 0.23 TCGA-D3-A8GI-06 12 1983771 1983771 C T CACNA2D4 Missense_Mutation p.G626E 0.23 deleterious(0.03) benign(0.218) TCGA-D3-A8GI-06 12 1983772 1983772 C T CACNA2D4 Missense_Mutation p.G626R 0.20 deleterious(0.02) possibly_damaging(0.866) TCGA-D3-A8GI-06 12 20766590 20766590 G A PDE3A Missense_Mutation p.D409N 0.57 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 12 20854358 20854358 C T SLCO1C1 Missense_Mutation p.S79L 0.58 deleterious(0) possibly_damaging(0.775) TCGA-D3-A8GI-06 12 21054378 21054378 G A SLCO1B3 Silent p.R614R 0.21 TCGA-D3-A8GI-06 12 21069195 21069195 C T SLCO1B3 3'UTR 0.17 TCGA-D3-A8GI-06 12 21196278 21196278 G A SLCO1B7 Silent p.R199R 0.52 TCGA-D3-A8GI-06 12 21196368 21196368 C T SLCO1B7 Silent p.F229F 0.20 TCGA-D3-A8GI-06 12 21201788 21201788 C T SLCO1B7 Silent p.F379F 0.11 TCGA-D3-A8GI-06 12 21327576 21327576 G A SLCO1B1 Missense_Mutation p.G98R 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 21329760 21329760 C T SLCO1B1 Missense_Mutation p.S137L 0.50 tolerated(0.36) benign(0.146) TCGA-D3-A8GI-06 12 21453339 21453339 C T SLCO1A2 Missense_Mutation p.E285K 0.25 tolerated(0.62) benign(0.009) TCGA-D3-A8GI-06 12 21679873 21679873 C T C12orf39 Silent p.F20F 0.51 TCGA-D3-A8GI-06 12 21919395 21919395 C T KCNJ8 Missense_Mutation p.M179I 0.57 tolerated(0.41) probably_damaging(0.954) TCGA-D3-A8GI-06 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 22015889 22015889 C T ABCC9 Silent p.Q779Q 0.39 TCGA-D3-A8GI-06 12 22015985 22015985 C T ABCC9 Silent p.R747R 0.40 TCGA-D3-A8GI-06 12 22063879 22063879 C T ABCC9 Missense_Mutation p.E349K 0.53 tolerated(0.47) benign(0.002) TCGA-D3-A8GI-06 12 22199450 22199450 C T CMAS Silent p.L71L 0.27 TCGA-D3-A8GI-06 12 25249968 25249968 C T LRMP Missense_Mutation p.A244V 0.27 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.62 deleterious(0) probably_damaging(0.94) TCGA-D3-A8GI-06 12 26568279 26568279 G A ITPR2 Silent p.F2421F 0.60 TCGA-D3-A8GI-06 12 26647128 26647128 G A ITPR2 Silent p.F1776F 0.43 TCGA-D3-A8GI-06 12 27826721 27826721 C T PPFIBP1 Silent p.S464S 0.32 TCGA-D3-A8GI-06 12 27832503 27832503 C T PPFIBP1 Missense_Mutation p.P572L 0.28 deleterious(0) benign(0.027) TCGA-D3-A8GI-06 12 27845775 27845775 C T PPFIBP1 Missense_Mutation p.S999F 0.34 tolerated(0.05) probably_damaging(0.994) TCGA-D3-A8GI-06 12 29649115 29649115 C T OVCH1 Missense_Mutation p.E94K 0.46 tolerated(0.07) benign(0.338) TCGA-D3-A8GI-06 12 30818703 30818703 G A IPO8 Missense_Mutation p.A433V 0.51 deleterious(0) probably_damaging(0.919) TCGA-D3-A8GI-06 12 30881811 30881811 G A CAPRIN2 Missense_Mutation p.S518F 0.56 deleterious_low_confidence(0.03) possibly_damaging(0.748) TCGA-D3-A8GI-06 12 3104093 3104093 C T TEAD4 Missense_Mutation p.A54V 0.56 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 12 31540482 31540482 G A DENND5B 3'UTR 0.57 TCGA-D3-A8GI-06 12 31632685 31632685 A G DENND5B Missense_Mutation p.Y248H 0.62 tolerated(0.72) benign(0.02) TCGA-D3-A8GI-06 12 32729210 32729210 G A FGD4 5'UTR 0.30 TCGA-D3-A8GI-06 12 32945601 32945601 C T PKP2 Missense_Mutation p.E852K 0.55 deleterious(0.01) possibly_damaging(0.67) TCGA-D3-A8GI-06 12 32955374 32955374 C T PKP2 Silent p.R754R 0.29 TCGA-D3-A8GI-06 12 32977082 32977082 G A PKP2 Missense_Mutation p.A568V 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 33021869 33021869 G A PKP2 Missense_Mutation p.R388W 0.56 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GI-06 12 34175405 34175405 C A ALG10 5'UTR 0.19 TCGA-D3-A8GI-06 12 38714891 38714891 C T ALG10B Missense_Mutation p.P433L 0.24 deleterious(0.02) benign(0.097) TCGA-D3-A8GI-06 12 3938134 3938134 G A PARP11 Silent p.N70N 0.59 TCGA-D3-A8GI-06 12 39716489 39716489 G A KIF21A Missense_Mutation p.P1218S 0.48 tolerated(0.21) benign(0.083) TCGA-D3-A8GI-06 12 39726836 39726836 G A KIF21A Missense_Mutation p.S854L 0.54 tolerated(1) benign(0) TCGA-D3-A8GI-06 12 39745742 39745742 G A KIF21A Nonsense_Mutation p.R504* 0.56 TCGA-D3-A8GI-06 12 40034759 40034759 C T C12orf40 Missense_Mutation p.S9F 0.58 deleterious(0) possibly_damaging(0.563) TCGA-D3-A8GI-06 12 41302203 41302203 G A CNTN1 5'UTR 0.29 TCGA-D3-A8GI-06 12 41374722 41374722 C T CNTN1 Missense_Mutation p.P606S 0.55 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A8GI-06 12 41961603 41961603 G A PDZRN4 Missense_Mutation p.E496K 0.27 deleterious(0.04) benign(0.015) TCGA-D3-A8GI-06 12 41967248 41967248 G A PDZRN4 Nonsense_Mutation p.W889* 0.50 TCGA-D3-A8GI-06 12 43763165 43763165 G A ADAMTS20 Silent p.S1822S 0.45 TCGA-D3-A8GI-06 12 43822048 43822048 C T ADAMTS20 Missense_Mutation p.G1314E 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 12 43925936 43925936 C T ADAMTS20 Silent p.G172G 0.14 TCGA-D3-A8GI-06 12 4461555 4461555 C T C12orf5 Missense_Mutation p.P171S 0.60 tolerated(0.09) benign(0.056) TCGA-D3-A8GI-06 12 4481764 4481764 C T FGF23 Missense_Mutation p.G104E 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 45097603 45097603 C T NELL2 Missense_Mutation p.M458I 0.51 tolerated(0.34) benign(0.02) TCGA-D3-A8GI-06 12 4553395 4553395 C T FGF6 Silent p.L118L 0.19 TCGA-D3-A8GI-06 12 45810625 45810625 C T ANO6 Nonsense_Mutation p.Q740* 0.15 TCGA-D3-A8GI-06 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.59 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 12 4627297 4627297 A C C12orf4 Silent p.L320L 0.55 TCGA-D3-A8GI-06 12 4665596 4665596 G A RAD51AP1 Missense_Mutation p.D284N 0.26 deleterious(0.02) benign(0.133) TCGA-D3-A8GI-06 12 47172453 47172453 G A SLC38A4 Missense_Mutation p.P275L 0.43 tolerated(0.4) benign(0.001) TCGA-D3-A8GI-06 12 4737694 4737694 G A AKAP3 Missense_Mutation p.S125F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 48145713 48145713 C T RAPGEF3 Missense_Mutation p.E87K 0.26 tolerated(0.89) benign(0.018) TCGA-D3-A8GI-06 12 48372520 48372520 G A COL2A1 Missense_Mutation p.P919S 0.43 unknown(0) TCGA-D3-A8GI-06 12 48373346 48373346 C T COL2A1 Missense_Mutation p.G894E 0.58 unknown(0) TCGA-D3-A8GI-06 12 48373347 48373347 C T COL2A1 Missense_Mutation p.G894R 0.56 unknown(0) TCGA-D3-A8GI-06 12 48388241 48388241 C T COL2A1 Missense_Mutation p.G261E 0.57 unknown(0) TCGA-D3-A8GI-06 12 48389516 48389516 C T COL2A1 Missense_Mutation p.E229K 0.29 unknown(0) TCGA-D3-A8GI-06 12 4848485 4848485 C T GALNT8 Silent p.F222F 0.19 TCGA-D3-A8GI-06 12 4853766 4853766 G A GALNT8 Missense_Mutation p.E254K 0.55 tolerated(1) benign(0.015) TCGA-D3-A8GI-06 12 48866614 48866614 C A ANP32D Nonsense_Mutation p.S56* 0.56 TCGA-D3-A8GI-06 12 48866671 48866671 G A ANP32D Missense_Mutation p.R75K 0.37 deleterious(0.03) benign(0.013) TCGA-D3-A8GI-06 12 48920207 48920207 G A OR8S1 Missense_Mutation p.G265S 0.64 tolerated(0.1) benign(0.393) TCGA-D3-A8GI-06 12 49254909 49254909 C T RND1 Silent p.R108R 0.64 TCGA-D3-A8GI-06 12 49718008 49718008 C T TROAP Intron 0.20 TCGA-D3-A8GI-06 12 49952495 49952495 G A MCRS1 Silent p.F453F 0.20 TCGA-D3-A8GI-06 12 5020763 5020763 C T KCNA1 Silent p.F73F 0.28 TCGA-D3-A8GI-06 12 50369373 50369373 G C AQP6 Silent p.G256G 0.52 TCGA-D3-A8GI-06 12 50474468 50474468 G A ASIC1 Missense_Mutation p.G465S 0.84 tolerated_low_confidence(0.9) probably_damaging(0.931) TCGA-D3-A8GI-06 12 51457635 51457635 G A CSRNP2 Missense_Mutation p.P509L 0.50 deleterious_low_confidence(0) benign(0.136) TCGA-D3-A8GI-06 12 51457636 51457636 G A CSRNP2 Missense_Mutation p.P509S 0.49 deleterious_low_confidence(0.02) benign(0.003) TCGA-D3-A8GI-06 12 51754618 51754618 G A GALNT6 Missense_Mutation p.P352S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 51868921 51868921 C T SLC4A8 Silent p.L701L 0.26 TCGA-D3-A8GI-06 12 52200127 52200127 C T SCN8A Silent p.I1619I 0.54 TCGA-D3-A8GI-06 12 52757884 52757884 C T KRT85 Missense_Mutation p.E252K 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GI-06 12 52776839 52776839 C T KRT84 Missense_Mutation p.E256K 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 12 52793847 52793847 G A KRT82 Silent p.I288I 0.55 TCGA-D3-A8GI-06 12 52799828 52799828 G A KRT82 Silent p.F78F 0.64 TCGA-D3-A8GI-06 12 52867412 52867412 G A KRT6C Missense_Mutation p.S37F 0.50 deleterious(0) unknown(0) TCGA-D3-A8GI-06 12 52885472 52885472 G A KRT6A Silent p.L197L 0.24 TCGA-D3-A8GI-06 12 52941989 52941989 C T KRT71 Missense_Mutation p.E309K 0.24 deleterious(0) possibly_damaging(0.724) TCGA-D3-A8GI-06 12 52963676 52963676 C T KRT74 Silent p.R367R 0.27 TCGA-D3-A8GI-06 12 52967171 52967171 G A KRT74 Missense_Mutation p.P131S 0.50 deleterious(0.01) benign(0.089) TCGA-D3-A8GI-06 12 52967353 52967363 GCCCGAACGCC - KRT74 Frame_Shift_Del p.G67Wfs*62 0.48 TCGA-D3-A8GI-06 12 53010075 53010075 C T KRT73 Silent p.L179L 0.22 TCGA-D3-A8GI-06 12 53038821 53038821 C T KRT2 Silent p.V634V 0.30 TCGA-D3-A8GI-06 12 53069521 53069521 C T KRT1 Missense_Mutation p.G495R 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 12 53185586 53185586 C T KRT3 Silent p.Q401Q 0.20 TCGA-D3-A8GI-06 12 53233672 53233672 G A KRT78 Silent p.L382L 0.22 TCGA-D3-A8GI-06 12 53454016 53454016 C T TENC1 Missense_Mutation p.A874V 0.36 tolerated(0.35) benign(0.007) TCGA-D3-A8GI-06 12 53512144 53512144 C T SOAT2 Silent p.I263I 0.54 TCGA-D3-A8GI-06 12 53677217 53677217 C T ESPL1 Missense_Mutation p.S991L 0.59 tolerated(0.08) probably_damaging(0.945) TCGA-D3-A8GI-06 12 53805071 53805071 C T SP1 3'UTR 0.33 TCGA-D3-A8GI-06 12 53823672 53823672 G A AMHR2 Missense_Mutation p.D400N 0.23 deleterious(0.02) possibly_damaging(0.822) TCGA-D3-A8GI-06 12 53895912 53895912 A G TARBP2 Missense_Mutation p.Q56R 0.28 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 12 53895913 53895913 A T TARBP2 Missense_Mutation p.Q56H 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 12 53911166 53911166 G A ATF7 Intron 0.36 TCGA-D3-A8GI-06 12 54333422 54333422 C T HOXC13 Silent p.F244F 0.64 TCGA-D3-A8GI-06 12 54686365 54686365 C T NFE2 Silent p.R305R 0.23 TCGA-D3-A8GI-06 12 54802716 54802716 C T ITGA5 Silent p.Q202Q 0.45 TCGA-D3-A8GI-06 12 54925527 54925527 G A NCKAP1L Missense_Mutation p.G900E 0.26 deleterious(0.04) benign(0.155) TCGA-D3-A8GI-06 12 54925528 54925528 G A NCKAP1L Silent p.G900G 0.26 TCGA-D3-A8GI-06 12 54971299 54971299 C T PPP1R1A 3'Flank 0.36 TCGA-D3-A8GI-06 12 54971326 54971326 C T PPP1R1A 3'Flank 0.52 TCGA-D3-A8GI-06 12 55024706 55024706 C T LACRT Silent p.K129K 0.33 TCGA-D3-A8GI-06 12 55356935 55356935 G A TESPA1 Silent p.F249F 0.40 TCGA-D3-A8GI-06 12 55420676 55420676 G A NEUROD4 Silent p.G151G 0.53 TCGA-D3-A8GI-06 12 55688711 55688711 G A OR6C6 Silent p.I102I 0.27 TCGA-D3-A8GI-06 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.48 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-D3-A8GI-06 12 55715310 55715310 C T OR6C1 Silent p.F309F 0.44 TCGA-D3-A8GI-06 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.28 tolerated_low_confidence(0.15) benign(0.32) TCGA-D3-A8GI-06 12 55945167 55945167 C T OR6C4 Missense_Mutation p.L53F 0.60 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A8GI-06 12 56031111 56031111 G A OR10P1 Missense_Mutation p.V146M 0.53 deleterious(0.01) possibly_damaging(0.547) TCGA-D3-A8GI-06 12 56075856 56075856 C T METTL7B Silent p.F106F 0.45 TCGA-D3-A8GI-06 12 56532268 56532268 G A ESYT1 Silent p.R816R 0.35 TCGA-D3-A8GI-06 12 56559119 56559119 G A SMARCC2 Missense_Mutation p.P1041L 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A8GI-06 12 56559120 56559120 G A SMARCC2 Missense_Mutation p.P1041S 0.38 tolerated_low_confidence(0.2) unknown(0) TCGA-D3-A8GI-06 12 56625319 56625319 C T SLC39A5 Silent p.S87S 0.60 TCGA-D3-A8GI-06 12 56814459 56814459 G A TIMELESS Missense_Mutation p.A1041V 0.24 tolerated(0.06) possibly_damaging(0.456) TCGA-D3-A8GI-06 12 57167823 57167823 G A HSD17B6 Missense_Mutation p.E63K 0.72 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 12 57328039 57328039 C T SDR9C7 Missense_Mutation p.A3T 0.39 tolerated(0.13) benign(0.005) TCGA-D3-A8GI-06 12 57390269 57390269 G A GPR182 3'UTR 0.68 TCGA-D3-A8GI-06 12 57424074 57424074 G A MYO1A Silent p.S837S 0.48 TCGA-D3-A8GI-06 12 57431803 57431803 A G MYO1A Missense_Mutation p.L604P 0.40 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 12 57431844 57431844 C T MYO1A Silent p.K590K 0.44 TCGA-D3-A8GI-06 12 57559884 57559884 T C LRP1 Missense_Mutation p.S897P 0.24 possibly_damaging(0.794) TCGA-D3-A8GI-06 12 57588162 57588162 C T LRP1 Silent p.F2648F 0.25 TCGA-D3-A8GI-06 12 57944073 57944073 G A KIF5A Missense_Mutation p.E7K 0.55 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 12 57957474 57957474 G A KIF5A Missense_Mutation p.E97K 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 12 57994614 57994614 C T PIP4K2C Silent p.I278I 0.28 TCGA-D3-A8GI-06 12 58016339 58016339 C T SLC26A10 Intron 0.48 TCGA-D3-A8GI-06 12 58020606 58020606 C T B4GALNT1 Missense_Mutation p.G508E 0.29 tolerated(0.27) benign(0.295) TCGA-D3-A8GI-06 12 6030290 6030290 G A ANO2 Silent p.A146A 0.19 TCGA-D3-A8GI-06 12 6030291 6030291 G A ANO2 Missense_Mutation p.A146V 0.20 tolerated(0.47) benign(0.041) TCGA-D3-A8GI-06 12 6031912 6031912 C T ANO2 Silent p.G23G 0.38 TCGA-D3-A8GI-06 12 6128118 6128118 C T VWF Missense_Mutation p.G1489E 0.20 tolerated(0.94) possibly_damaging(0.604) TCGA-D3-A8GI-06 12 6128254 6128254 C T VWF Missense_Mutation p.D1444N 0.56 tolerated(0.54) possibly_damaging(0.814) TCGA-D3-A8GI-06 12 62104147 62104147 C T FAM19A2 3'UTR 0.31 TCGA-D3-A8GI-06 12 62148676 62148676 C T FAM19A2 Missense_Mutation p.R79Q 0.64 tolerated(0.07) possibly_damaging(0.746) TCGA-D3-A8GI-06 12 63225933 63225933 G A PPM1H Silent p.S124S 0.65 TCGA-D3-A8GI-06 12 64041106 64041106 T A DPY19L2 Missense_Mutation p.M210L 0.29 deleterious(0.01) benign(0.02) TCGA-D3-A8GI-06 12 64813943 64813943 C T XPOT Nonsense_Mutation p.Q195* 0.22 TCGA-D3-A8GI-06 12 6483612 6483612 G A SCNN1A Missense_Mutation p.P172L 0.59 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 12 65445045 65445045 G A WIF1 3'UTR 0.32 TCGA-D3-A8GI-06 12 6559969 6559969 G A CD27 Intron 0.67 TCGA-D3-A8GI-06 12 6562344 6562344 G A TAPBPL Missense_Mutation p.R59K 0.33 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 12 6671125 6671125 G A NOP2 Missense_Mutation p.R364C 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 66788099 66788099 G A GRIP1 Missense_Mutation p.T621I 0.59 deleterious(0) possibly_damaging(0.839) TCGA-D3-A8GI-06 12 6696961 6696961 G A CHD4 Missense_Mutation p.T1207I 0.25 deleterious(0.04) benign(0.003) TCGA-D3-A8GI-06 12 6837122 6837122 C T COPS7A Missense_Mutation p.R65W 0.63 deleterious(0.01) possibly_damaging(0.773) TCGA-D3-A8GI-06 12 69265613 69265613 C T CPM Missense_Mutation p.D128N 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 12 6946706 6946706 C T LEPREL2 Silent p.F559F 0.40 TCGA-D3-A8GI-06 12 69651683 69651683 C T CPSF6 Missense_Mutation p.P231L 0.61 tolerated(0.62) unknown(0) TCGA-D3-A8GI-06 12 69652568 69652568 C T CPSF6 Missense_Mutation p.P298L 0.29 tolerated(0.06) unknown(0) TCGA-D3-A8GI-06 12 70004457 70004457 C T LRRC10 Silent p.L54L 0.52 TCGA-D3-A8GI-06 12 70049342 70049342 T A BEST3 Missense_Mutation p.K451M 0.24 deleterious(0) possibly_damaging(0.868) TCGA-D3-A8GI-06 12 70049405 70049405 C T BEST3 Missense_Mutation p.S430N 0.46 tolerated(0.32) benign(0.004) TCGA-D3-A8GI-06 12 70065355 70065355 G A BEST3 Missense_Mutation p.S318F 0.53 deleterious(0) possibly_damaging(0.886) TCGA-D3-A8GI-06 12 70070752 70070752 G A BEST3 Missense_Mutation p.L271F 0.63 deleterious(0.05) benign(0.304) TCGA-D3-A8GI-06 12 70206587 70206587 C T RAB3IP Missense_Mutation p.S403F 0.29 tolerated(0.56) benign(0.14) TCGA-D3-A8GI-06 12 70933610 70933610 G A PTPRB Missense_Mutation p.S1898F 0.19 deleterious(0.01) benign(0.244) TCGA-D3-A8GI-06 12 70953334 70953334 C T PTPRB Silent p.G1501G 0.30 TCGA-D3-A8GI-06 12 70965067 70965067 G A PTPRB Missense_Mutation p.P1037S 0.50 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 12 70965850 70965850 C T PTPRB Missense_Mutation p.G954R 0.30 tolerated(0.06) probably_damaging(0.988) TCGA-D3-A8GI-06 12 71002876 71002876 C T PTPRB Missense_Mutation p.E318K 0.22 deleterious(0.01) possibly_damaging(0.69) TCGA-D3-A8GI-06 12 71029639 71029639 G A PTPRB Missense_Mutation p.S88F 0.33 deleterious_low_confidence(0.04) benign(0.023) TCGA-D3-A8GI-06 12 71092066 71092066 G A PTPRR Missense_Mutation p.R420C 0.45 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 12 71094916 71094916 C T PTPRR Splice_Site p.X398_splice 0.26 TCGA-D3-A8GI-06 12 71526505 71526505 G A TSPAN8 Nonsense_Mutation p.Q182* 0.19 TCGA-D3-A8GI-06 12 71531972 71531972 C T TSPAN8 Silent p.V100V 0.26 TCGA-D3-A8GI-06 12 7188574 7188574 C T C1R Silent p.Q408Q 0.23 TCGA-D3-A8GI-06 12 7188575 7188575 T G C1R Missense_Mutation p.Q408P 0.23 tolerated(0.22) benign(0.142) TCGA-D3-A8GI-06 12 72863562 72863562 C T TRHDE Missense_Mutation p.P402L 0.49 deleterious(0.04) possibly_damaging(0.657) TCGA-D3-A8GI-06 12 73046174 73046174 C T TRHDE Silent p.F871F 0.22 TCGA-D3-A8GI-06 12 7473390 7473390 G A ACSM4 Missense_Mutation p.D331N 0.17 tolerated(0.19) benign(0.027) TCGA-D3-A8GI-06 12 7476977 7476977 G A ACSM4 Missense_Mutation p.D473N 0.63 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 12 7477185 7477185 C T ACSM4 Silent p.I509I 0.26 TCGA-D3-A8GI-06 12 7527097 7527097 G A CD163L1 Missense_Mutation p.S1117F 0.20 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 12 75434838 75434838 G A KCNC2 3'UTR 0.63 TCGA-D3-A8GI-06 12 75441937 75441937 C T KCNC2 Silent p.R592R 0.29 TCGA-D3-A8GI-06 12 75444312 75444312 C T KCNC2 Silent p.R491R 0.49 TCGA-D3-A8GI-06 12 75444588 75444588 C T KCNC2 Missense_Mutation p.M399I 0.53 deleterious(0.02) probably_damaging(0.966) TCGA-D3-A8GI-06 12 7550945 7550945 A C CD163L1 Missense_Mutation p.N548K 0.58 tolerated(0.31) probably_damaging(0.995) TCGA-D3-A8GI-06 12 7649654 7649654 C T CD163 Missense_Mutation p.G285E 0.52 deleterious(0.01) benign(0.327) TCGA-D3-A8GI-06 12 7649730 7649730 C T CD163 Splice_Site p.X260_splice 0.21 TCGA-D3-A8GI-06 12 76788473 76788473 G A OSBPL8 Missense_Mutation p.P237S 0.42 deleterious(0.04) possibly_damaging(0.881) TCGA-D3-A8GI-06 12 77417749 77417749 G A E2F7 3'UTR 0.30 TCGA-D3-A8GI-06 12 7805421 7805421 C T APOBEC1 Missense_Mutation p.E19K 0.53 tolerated(0.22) benign(0.069) TCGA-D3-A8GI-06 12 78362434 78362434 C T NAV3 Missense_Mutation p.P208L 0.28 deleterious_low_confidence(0) benign(0.004) TCGA-D3-A8GI-06 12 7842561 7842561 G A GDF3 Silent p.P336P 0.49 TCGA-D3-A8GI-06 12 7843273 7843273 G A GDF3 Missense_Mutation p.S99F 0.19 tolerated(0.07) benign(0.002) TCGA-D3-A8GI-06 12 78513233 78513233 T A NAV3 Missense_Mutation p.I1086K 0.60 deleterious(0) possibly_damaging(0.848) TCGA-D3-A8GI-06 12 79813045 79813045 G A SYT1 Intron 0.17 TCGA-D3-A8GI-06 12 80714235 80714235 G A OTOGL Missense_Mutation p.R1270K 0.40 deleterious(0.02) possibly_damaging(0.897) TCGA-D3-A8GI-06 12 80733009 80733009 G A OTOGL Missense_Mutation p.R1663Q 0.30 tolerated(0.65) benign(0.001) TCGA-D3-A8GI-06 12 80764404 80764404 G A OTOGL Missense_Mutation p.E2215K 0.48 tolerated(0.08) possibly_damaging(0.476) TCGA-D3-A8GI-06 12 81101854 81101854 G A MYF6 Missense_Mutation p.R119Q 0.30 tolerated(0.19) probably_damaging(0.994) TCGA-D3-A8GI-06 12 81111100 81111100 G A MYF5 Silent p.K86K 0.49 TCGA-D3-A8GI-06 12 81112152 81112152 C T MYF5 Missense_Mutation p.P173S 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 12 81239619 81239619 C T LIN7A Missense_Mutation p.G125R 0.40 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 12 81568669 81568669 C T ACSS3 Missense_Mutation p.R401C 0.57 deleterious(0) possibly_damaging(0.9) TCGA-D3-A8GI-06 12 81660758 81660758 G A PPFIA2 Silent p.A1176A 0.38 TCGA-D3-A8GI-06 12 81734936 81734936 C T PPFIA2 Missense_Mutation p.E772K 0.52 deleterious(0.01) benign(0.386) TCGA-D3-A8GI-06 12 81741493 81741493 C T PPFIA2 Missense_Mutation p.R684K 0.39 deleterious(0.02) possibly_damaging(0.73) TCGA-D3-A8GI-06 12 81768445 81768445 C T PPFIA2 Missense_Mutation p.E412K 0.35 deleterious(0.03) possibly_damaging(0.584) TCGA-D3-A8GI-06 12 8196335 8196335 C T FOXJ2 Silent p.S149S 0.30 TCGA-D3-A8GI-06 12 82147765 82147765 G A PPFIA2 Missense_Mutation p.S79L 0.27 deleterious(0.04) benign(0.343) TCGA-D3-A8GI-06 12 82752575 82752575 C T METTL25 Silent p.R77R 0.46 TCGA-D3-A8GI-06 12 8329613 8329613 G A ZNF705A Missense_Mutation p.E113K 0.24 tolerated(0.46) benign(0.008) TCGA-D3-A8GI-06 12 83379770 83379770 C T TMTC2 Missense_Mutation p.S672F 0.33 deleterious(0.01) possibly_damaging(0.752) TCGA-D3-A8GI-06 12 8374358 8374358 C T FAM90A1 3'UTR 0.31 TCGA-D3-A8GI-06 12 8612252 8612252 C T CLEC6A Missense_Mutation p.H61Y 0.22 tolerated(0.17) benign(0.004) TCGA-D3-A8GI-06 12 86198638 86198638 C T RASSF9 Missense_Mutation p.E384K 0.28 tolerated(0.54) benign(0.009) TCGA-D3-A8GI-06 12 86199652 86199652 G A RASSF9 Missense_Mutation p.R46C 0.63 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GI-06 12 86199653 86199653 T A RASSF9 Missense_Mutation p.K45N 0.63 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 12 8630024 8630024 G A CLEC6A Silent p.R198R 0.56 TCGA-D3-A8GI-06 12 8667838 8667838 G A CLEC4D Missense_Mutation p.G12E 0.44 tolerated(0.06) benign(0.015) TCGA-D3-A8GI-06 12 88379636 88379636 G A C12orf50 Missense_Mutation p.L373F 0.49 tolerated(0.18) benign(0.033) TCGA-D3-A8GI-06 12 88379704 88379704 G A C12orf50 Missense_Mutation p.P350L 0.45 tolerated(0.2) benign(0.22) TCGA-D3-A8GI-06 12 88568412 88568412 C T TMTC3 Silent p.L410L 0.35 TCGA-D3-A8GI-06 12 91552130 91552130 C T DCN Missense_Mutation p.E161K 0.34 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 12 93162849 93162849 A C PLEKHG7 Missense_Mutation p.N342T 0.24 tolerated(0.49) benign(0.002) TCGA-D3-A8GI-06 12 9317941 9317941 C T PZP Missense_Mutation p.G761R 0.52 tolerated(0.41) possibly_damaging(0.786) TCGA-D3-A8GI-06 12 94975532 94975532 G A TMCC3 Silent p.L287L 0.26 TCGA-D3-A8GI-06 12 96077407 96077407 G A NTN4 Missense_Mutation p.P421S 0.43 tolerated(0.4) benign(0.326) TCGA-D3-A8GI-06 12 96288813 96288813 C T CCDC38 Silent p.Q242Q 0.43 TCGA-D3-A8GI-06 12 96370274 96370274 G A HAL Missense_Mutation p.P589L 0.61 tolerated(0.42) possibly_damaging(0.793) TCGA-D3-A8GI-06 12 96386496 96386496 G A HAL Missense_Mutation p.S226F 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 12 97137828 97137828 C T C12orf55 Missense_Mutation p.R2530C 0.41 tolerated(0.19) benign(0.011) TCGA-D3-A8GI-06 12 97957656 97957656 G A MIR135A2 RNA 0.44 TCGA-D3-A8GI-06 12 9913362 9913362 C T CD69 Missense_Mutation p.G19R 0.55 deleterious(0.03) benign(0.018) TCGA-D3-A8GI-06 12 99447033 99447033 C T ANKS1B Missense_Mutation p.D894N 0.40 deleterious(0.03) possibly_damaging(0.808) TCGA-D3-A8GI-06 12 9994981 9994981 C T KLRF1 Missense_Mutation p.S180F 0.22 tolerated(0.07) benign(0.048) TCGA-D3-A8GI-06 13 100172324 100172324 C T TM9SF2 Missense_Mutation p.P92S 0.40 tolerated(0.45) probably_damaging(0.981) TCGA-D3-A8GI-06 13 100518558 100518558 G A CLYBL Silent p.A233A 0.40 TCGA-D3-A8GI-06 13 100617672 100617672 C T ZIC5 Missense_Mutation p.E651K 0.39 deleterious(0.01) possibly_damaging(0.696) TCGA-D3-A8GI-06 13 100637906 100637906 C T ZIC2 Silent p.L523L 0.57 TCGA-D3-A8GI-06 13 100807258 100807258 C T PCCA Missense_Mutation p.A109V 0.46 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GI-06 13 100953816 100953816 C T PCCA Missense_Mutation p.R390C 0.45 deleterious(0.01) benign(0.339) TCGA-D3-A8GI-06 13 101277739 101277739 G A TMTC4 Intron 0.39 TCGA-D3-A8GI-06 13 101747957 101747957 C T NALCN Silent p.E1079E 0.35 TCGA-D3-A8GI-06 13 101910811 101910811 C T NALCN Missense_Mutation p.E417K 0.41 tolerated(0.51) benign(0.008) TCGA-D3-A8GI-06 13 101944375 101944375 G A NALCN Missense_Mutation p.S338L 0.39 tolerated(0.26) benign(0.188) TCGA-D3-A8GI-06 13 101997710 101997710 C T NALCN Missense_Mutation p.G236S 0.42 deleterious(0.01) probably_damaging(0.951) TCGA-D3-A8GI-06 13 102368069 102368069 G A ITGBL1 3'UTR 0.38 TCGA-D3-A8GI-06 13 102521131 102521131 C T FGF14 Missense_Mutation p.G123R 0.41 deleterious(0.03) probably_damaging(0.975) TCGA-D3-A8GI-06 13 103419826 103419826 G A TEX30 Missense_Mutation p.R101C 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 13 103704996 103704996 G A SLC10A2 Missense_Mutation p.P187S 0.40 deleterious(0.03) possibly_damaging(0.728) TCGA-D3-A8GI-06 13 103710636 103710636 G A SLC10A2 Silent p.I158I 0.40 TCGA-D3-A8GI-06 13 103710714 103710714 G A SLC10A2 Silent p.C132C 0.39 TCGA-D3-A8GI-06 13 109318266 109318266 C T MYO16 5'UTR 0.50 TCGA-D3-A8GI-06 13 109318440 109318440 C T MYO16 Missense_Mutation p.H57Y 0.57 deleterious(0) benign(0.418) TCGA-D3-A8GI-06 13 109672133 109672133 A C MYO16 Missense_Mutation p.K868N 0.43 deleterious(0.03) probably_damaging(0.936) TCGA-D3-A8GI-06 13 109779820 109779820 G A MYO16 Missense_Mutation p.D1303N 0.39 deleterious(0.04) possibly_damaging(0.589) TCGA-D3-A8GI-06 13 111156325 111156325 C T COL4A2 Missense_Mutation p.P1424S 0.28 unknown(0) TCGA-D3-A8GI-06 13 111156326 111156326 C T COL4A2 Missense_Mutation p.P1424L 0.28 unknown(0) TCGA-D3-A8GI-06 13 111303425 111303425 G A CARS2 Missense_Mutation p.P337L 0.28 deleterious(0) possibly_damaging(0.833) TCGA-D3-A8GI-06 13 111545525 111545525 G A ANKRD10 Nonsense_Mutation p.Q181* 0.39 TCGA-D3-A8GI-06 13 113536301 113536301 C T ATP11A 3'UTR 0.49 TCGA-D3-A8GI-06 13 114078587 114078587 G A ADPRHL1 Silent p.L284L 0.42 TCGA-D3-A8GI-06 13 114290417 114290417 C T TFDP1 Silent p.V271V 0.45 TCGA-D3-A8GI-06 13 115010387 115010387 C T CDC16 Missense_Mutation p.H264Y 0.37 deleterious(0) possibly_damaging(0.899) TCGA-D3-A8GI-06 13 20216397 20216397 G A MPHOSPH8 Missense_Mutation p.R119K 0.39 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GI-06 13 20635283 20635283 G A ZMYM2 Missense_Mutation p.D944N 0.44 tolerated(0.63) benign(0) TCGA-D3-A8GI-06 13 20763588 20763588 C T GJB2 Missense_Mutation p.G45R 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 13 20796688 20796688 C T GJB6 3'UTR 0.46 TCGA-D3-A8GI-06 13 21228016 21228016 C T IFT88 Missense_Mutation p.P660S 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 13 24411888 24411888 T A MIPEP Missense_Mutation p.H449L 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 13 24515861 24515861 G A ANKRD20A19P RNA 0.33 TCGA-D3-A8GI-06 13 25008954 25008954 G A PARP4 Missense_Mutation p.P1442L 0.29 tolerated(0.15) benign(0) TCGA-D3-A8GI-06 13 25008955 25008955 G A PARP4 Missense_Mutation p.P1442S 0.29 tolerated(0.16) benign(0.001) TCGA-D3-A8GI-06 13 25171741 25171741 C T RP11-556N21.1 RNA 0.31 TCGA-D3-A8GI-06 13 25284657 25284657 C T ATP12A Silent p.I947I 0.35 TCGA-D3-A8GI-06 13 25399799 25399799 G A RNF17 Missense_Mutation p.E712K 0.44 deleterious(0) benign(0.178) TCGA-D3-A8GI-06 13 25670617 25670617 G A PABPC3 Missense_Mutation p.R94Q 0.40 deleterious(0.02) possibly_damaging(0.787) TCGA-D3-A8GI-06 13 25670757 25670757 G A PABPC3 Missense_Mutation p.G141R 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 13 25672268 25672268 C T PABPC3 3'UTR 0.46 TCGA-D3-A8GI-06 13 25744067 25744067 C T AMER2 Missense_Mutation p.G564E 0.47 tolerated(1) benign(0.022) TCGA-D3-A8GI-06 13 26151262 26151262 T C ATP8A2 Missense_Mutation p.Y590H 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-D3-A8GI-06 13 27333193 27333193 C T GPR12 Missense_Mutation p.G258R 0.37 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 13 27847187 27847187 C T RASL11A Silent p.V95V 0.41 TCGA-D3-A8GI-06 13 28611390 28611390 C T FLT3 Missense_Mutation p.G414E 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.46 tolerated(0.2) benign(0.002) TCGA-D3-A8GI-06 13 29599601 29599601 C T MTUS2 Missense_Mutation p.P266S 0.39 tolerated(0.14) benign(0.037) TCGA-D3-A8GI-06 13 29599602 29599602 C T MTUS2 Missense_Mutation p.P266L 0.39 tolerated(0.2) benign(0.013) TCGA-D3-A8GI-06 13 29600099 29600099 T C MTUS2 Silent p.L432L 0.46 TCGA-D3-A8GI-06 13 30107028 30107028 C T SLC7A1 Silent p.L154L 0.38 TCGA-D3-A8GI-06 13 31531161 31531161 C T TEX26 Missense_Mutation p.S155L 0.32 tolerated(0.16) benign(0.047) TCGA-D3-A8GI-06 13 31540497 31540497 G A TEX26 Missense_Mutation p.G203E 0.45 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GI-06 13 31549049 31549049 G A TEX26 3'UTR 0.30 TCGA-D3-A8GI-06 13 32367161 32367161 C T RXFP2 Silent p.F574F 0.45 TCGA-D3-A8GI-06 13 32911752 32911752 C T BRCA2 Missense_Mutation p.T1087I 0.30 tolerated(0.22) benign(0.049) TCGA-D3-A8GI-06 13 33638343 33638343 C T KL 3'UTR 0.38 TCGA-D3-A8GI-06 13 35730285 35730285 C T NBEA Missense_Mutation p.R865C 0.36 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GI-06 13 35735941 35735941 G A NBEA Missense_Mutation p.G1306R 0.50 deleterious_low_confidence(0.04) possibly_damaging(0.467) TCGA-D3-A8GI-06 13 36180686 36180686 C T NBEA Missense_Mutation p.P2474S 0.34 tolerated(0.17) possibly_damaging(0.697) TCGA-D3-A8GI-06 13 36521528 36521528 G A DCLK1 Missense_Mutation p.R264C 0.48 deleterious(0.01) unknown(0) TCGA-D3-A8GI-06 13 37014150 37014150 G A CCNA1 Missense_Mutation p.E310K 0.38 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A8GI-06 13 37439744 37439744 G A SMAD9 Silent p.F311F 0.48 TCGA-D3-A8GI-06 13 37439772 37439772 G A SMAD9 Missense_Mutation p.T302I 0.34 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 13 37439875 37439875 C T SMAD9 Missense_Mutation p.E268K 0.38 tolerated(0.9) possibly_damaging(0.531) TCGA-D3-A8GI-06 13 37679361 37679361 G A CSNK1A1L Silent p.L11L 0.38 TCGA-D3-A8GI-06 13 38161031 38161031 C T POSTN Missense_Mutation p.G214E 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 13 38266209 38266209 G A TRPC4 Silent p.I387I 0.51 TCGA-D3-A8GI-06 13 38357311 38357311 C T TRPC4 Missense_Mutation p.E54K 0.41 tolerated(0.22) probably_damaging(0.979) TCGA-D3-A8GI-06 13 39263443 39263443 C T FREM2 Silent p.F654F 0.43 TCGA-D3-A8GI-06 13 39598666 39598666 C T PROSER1 Missense_Mutation p.E170K 0.47 tolerated(0.24) benign(0.341) TCGA-D3-A8GI-06 13 41656837 41656837 C T WBP4 Intron 0.51 TCGA-D3-A8GI-06 13 42442598 42442598 C T VWA8 Missense_Mutation p.D366N 0.36 tolerated(0.11) benign(0.01) TCGA-D3-A8GI-06 13 42830576 42830576 C T FHP1 RNA 0.49 TCGA-D3-A8GI-06 13 43358265 43358265 G A FAM216B Missense_Mutation p.R21Q 0.42 tolerated(0.48) benign(0.033) TCGA-D3-A8GI-06 13 44455117 44455117 C T LACC1 5'UTR 0.28 TCGA-D3-A8GI-06 13 46553998 46553998 G A ZC3H13 Missense_Mutation p.S621F 0.41 probably_damaging(0.996) TCGA-D3-A8GI-06 13 46725116 46725116 T A LCP1 Missense_Mutation p.E279D 0.48 tolerated(0.15) benign(0.002) TCGA-D3-A8GI-06 13 46733765 46733765 C T LCP1 Missense_Mutation p.M11I 0.40 tolerated(0.33) benign(0.001) TCGA-D3-A8GI-06 13 47351657 47351657 T A ESD Missense_Mutation p.L234F 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 13 47409428 47409428 C T HTR2A Silent p.K320K 0.36 TCGA-D3-A8GI-06 13 52343409 52343409 C T DHRS12 Missense_Mutation p.G243R 0.40 tolerated(0.12) benign(0.421) TCGA-D3-A8GI-06 13 52532537 52532537 C T ATP7B Silent p.K755K 0.41 TCGA-D3-A8GI-06 13 52650234 52650234 C T NEK5 Missense_Mutation p.E565K 0.37 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A8GI-06 13 52667251 52667251 C T NEK5 Missense_Mutation p.E383K 0.48 tolerated(0.98) benign(0.001) TCGA-D3-A8GI-06 13 52951856 52951856 C T THSD1 Missense_Mutation p.G750E 0.40 deleterious(0.01) possibly_damaging(0.786) TCGA-D3-A8GI-06 13 53286905 53286905 A G LECT1 Silent p.L190L 0.42 TCGA-D3-A8GI-06 13 53298235 53298235 C T LECT1 Missense_Mutation p.G122E 0.41 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 13 58208033 58208033 C T PCDH17 Silent p.P451P 0.48 TCGA-D3-A8GI-06 13 58299475 58299475 G A PCDH17 3'UTR 0.40 TCGA-D3-A8GI-06 13 60413498 60413498 G A DIAPH3 Missense_Mutation p.P941L 0.39 tolerated(0.21) probably_damaging(0.948) TCGA-D3-A8GI-06 13 60413499 60413499 G A DIAPH3 Missense_Mutation p.P941S 0.39 tolerated(0.58) probably_damaging(0.93) TCGA-D3-A8GI-06 13 61987732 61987732 G A PCDH20 Missense_Mutation p.S167F 0.30 tolerated(0.55) benign(0.125) TCGA-D3-A8GI-06 13 61987733 61987733 A G PCDH20 Missense_Mutation p.S167P 0.30 tolerated(0.28) benign(0.276) TCGA-D3-A8GI-06 13 67205429 67205429 G A PCDH9 Missense_Mutation p.P1085S 0.39 deleterious(0.04) benign(0.158) TCGA-D3-A8GI-06 13 76335063 76335063 C T LMO7 5'UTR 0.37 TCGA-D3-A8GI-06 13 76415936 76415936 G A LMO7 Missense_Mutation p.G1050E 0.36 tolerated(0.86) benign(0) TCGA-D3-A8GI-06 13 78318596 78318596 G A SLAIN1 Intron 0.39 TCGA-D3-A8GI-06 13 78320838 78320838 G A SLAIN1 Missense_Mutation p.R205K 0.42 deleterious(0.02) unknown(0) TCGA-D3-A8GI-06 13 79908487 79908487 C A RBM26 Missense_Mutation p.A911S 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 13 84453521 84453521 C T SLITRK1 3'UTR 0.41 TCGA-D3-A8GI-06 13 84454482 84454482 G A SLITRK1 Silent p.I387I 0.44 TCGA-D3-A8GI-06 13 84454874 84454874 C T SLITRK1 Missense_Mutation p.E257K 0.43 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 13 95232204 95232204 G A TGDS Missense_Mutation p.P187S 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 13 95863034 95863034 G T ABCC4 Missense_Mutation p.A178E 0.36 deleterious(0) possibly_damaging(0.892) TCGA-D3-A8GI-06 13 98116543 98116543 C T RAP2A Silent p.A133A 0.40 TCGA-D3-A8GI-06 13 99361019 99361019 G A SLC15A1 Missense_Mutation p.S357F 0.33 deleterious(0) possibly_damaging(0.637) TCGA-D3-A8GI-06 13 99374148 99374148 G A SLC15A1 Silent p.S125S 0.42 TCGA-D3-A8GI-06 13 99374149 99374149 G A SLC15A1 Missense_Mutation p.S125F 0.43 deleterious(0) benign(0.219) TCGA-D3-A8GI-06 13 99376218 99376218 C T SLC15A1 Missense_Mutation p.D105N 0.43 deleterious(0.05) benign(0.314) TCGA-D3-A8GI-06 13 99532859 99532859 G A DOCK9 Missense_Mutation p.S938F 0.27 tolerated(0.69) possibly_damaging(0.575) TCGA-D3-A8GI-06 13 99567640 99567640 G A DOCK9 Missense_Mutation p.L279F 0.48 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GI-06 13 99574375 99574375 T C DOCK9 Missense_Mutation p.K171R 0.52 tolerated(0.16) benign(0.09) TCGA-D3-A8GI-06 14 100377849 100377849 G A EML1 Missense_Mutation p.G496E 0.30 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 14 100765185 100765185 C T SLC25A29 Silent p.T24T 0.21 TCGA-D3-A8GI-06 14 101350867 101350867 C T RTL1 Missense_Mutation p.E87K 0.32 tolerated_low_confidence(0.06) benign(0.044) TCGA-D3-A8GI-06 14 101351073 101351073 G A RTL1 Missense_Mutation p.P18L 0.29 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-D3-A8GI-06 14 101418255 101418255 G A SNORD114-2 RNA 0.22 TCGA-D3-A8GI-06 14 101420723 101420723 G A SNORD114-4 RNA 0.31 TCGA-D3-A8GI-06 14 101509364 101509364 G A MIR1185-1 RNA 0.55 TCGA-D3-A8GI-06 14 101520673 101520673 C T MIR382 RNA 0.57 TCGA-D3-A8GI-06 14 101526167 101526167 C T MIR154 RNA 0.29 TCGA-D3-A8GI-06 14 102028520 102028520 G A DIO3 Silent p.A229A 0.54 TCGA-D3-A8GI-06 14 102452300 102452300 G A DYNC1H1 Missense_Mutation p.E580K 0.27 probably_damaging(0.992) TCGA-D3-A8GI-06 14 102452353 102452353 C T DYNC1H1 Silent p.I597I 0.26 TCGA-D3-A8GI-06 14 102470912 102470912 C T DYNC1H1 Silent p.V1647V 0.29 TCGA-D3-A8GI-06 14 102476188 102476188 C T DYNC1H1 Missense_Mutation p.P1996S 0.25 benign(0) TCGA-D3-A8GI-06 14 102516140 102516140 C T DYNC1H1 Silent p.S4535S 0.48 TCGA-D3-A8GI-06 14 102551678 102551678 A G HSP90AA1 Missense_Mutation p.V329A 0.57 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A8GI-06 14 102918830 102918830 C T TECPR2 Missense_Mutation p.A1169V 0.43 tolerated(0.92) benign(0.001) TCGA-D3-A8GI-06 14 102918831 102918831 C T TECPR2 Silent p.A1169A 0.48 TCGA-D3-A8GI-06 14 103470287 103470287 G A CDC42BPB Missense_Mutation p.A142V 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 14 104129130 104129130 C T KLC1 Silent p.I221I 0.56 TCGA-D3-A8GI-06 14 104208325 104208325 C T PPP1R13B Missense_Mutation p.D542N 0.54 tolerated(0.38) possibly_damaging(0.579) TCGA-D3-A8GI-06 14 105179318 105179318 C T INF2 Missense_Mutation p.R922C 0.53 tolerated(0.06) unknown(0) TCGA-D3-A8GI-06 14 105222943 105222943 C T SIVA1 Missense_Mutation p.P106S 0.22 tolerated(0.5) benign(0.077) TCGA-D3-A8GI-06 14 105352970 105352970 C T CEP170B Silent p.F798F 0.51 TCGA-D3-A8GI-06 14 105408868 105408868 G A AHNAK2 Missense_Mutation p.S4307L 0.61 probably_damaging(0.998) TCGA-D3-A8GI-06 14 105410852 105410852 G A AHNAK2 Missense_Mutation p.P3646S 0.59 probably_damaging(0.986) TCGA-D3-A8GI-06 14 105413000 105413000 C T AHNAK2 Missense_Mutation p.A2930T 0.62 benign(0.08) TCGA-D3-A8GI-06 14 105423815 105423815 G A AHNAK2 Nonsense_Mutation p.R49* 0.38 TCGA-D3-A8GI-06 14 106090831 106090831 G A IGHG4 Silent p.S322S 0.14 TCGA-D3-A8GI-06 14 106091023 106091023 G A IGHG4 Silent p.A258A 0.34 TCGA-D3-A8GI-06 14 106091024 106091024 G A IGHG4 Missense_Mutation p.A258V 0.35 tolerated(0.42) benign(0.004) TCGA-D3-A8GI-06 14 106110135 106110135 C T IGHG2 Silent p.V161V 0.57 TCGA-D3-A8GI-06 14 106111099 106111099 G A IGHG2 Missense_Mutation p.P10L 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 14 106206435 106206435 T G IGHG1 Missense_Mutation p.S361R 0.26 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 14 106320631 106320631 G A IGHM Silent p.F393F 0.28 TCGA-D3-A8GI-06 14 106320826 106320826 C T IGHM Silent p.R328R 0.33 TCGA-D3-A8GI-06 14 106320827 106320827 C T IGHM Missense_Mutation p.R328K 0.40 tolerated(0.88) benign(0.001) TCGA-D3-A8GI-06 14 106321311 106321311 G A IGHM Silent p.A226A 0.51 TCGA-D3-A8GI-06 14 106321840 106321840 G A IGHM Missense_Mutation p.L132F 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GI-06 14 106330845 106330845 C T IGHJ3 Translation_Start_Site p.D1? 0.38 benign(0.163) TCGA-D3-A8GI-06 14 106331449 106331449 G A IGHJ2 Silent p.F4F 0.43 TCGA-D3-A8GI-06 14 106366999 106366999 G A IGHD1-14 5'Flank 0.42 TCGA-D3-A8GI-06 14 106471478 106471478 G A IGHV1-3 Missense_Mutation p.S40F 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-D3-A8GI-06 14 106573678 106573678 C T IGHV3-11 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.01) benign(0.246) TCGA-D3-A8GI-06 14 106667602 106667602 C T IGHV3-20 Silent p.T110T 0.47 TCGA-D3-A8GI-06 14 106691838 106691838 C T IGHV3-21 Silent p.K62K 0.58 TCGA-D3-A8GI-06 14 106733577 106733577 C T IGHV1-24 Translation_Start_Site p.M1? 0.34 deleterious(0.01) possibly_damaging(0.533) TCGA-D3-A8GI-06 14 106780675 106780675 C T IGHV4-28 Silent p.K63K 0.19 TCGA-D3-A8GI-06 14 106791008 106791008 C T IGHV3-30 Silent p.A116A 0.48 TCGA-D3-A8GI-06 14 106926236 106926236 C T IGHV3-43 Missense_Mutation p.M102I 0.29 deleterious_low_confidence(0.01) benign(0.331) TCGA-D3-A8GI-06 14 106963075 106963075 C T IGHV1-45 Nonsense_Mutation p.W69* 0.25 TCGA-D3-A8GI-06 14 107013057 107013057 C T IGHV3-49 Missense_Mutation p.E80K 0.34 tolerated_low_confidence(0.19) benign(0.205) TCGA-D3-A8GI-06 14 107035133 107035133 G A IGHV5-51 Silent p.L10L 0.25 TCGA-D3-A8GI-06 14 107035135 107035135 G A IGHV5-51 Missense_Mutation p.L10F 0.25 deleterious(0.05) possibly_damaging(0.628) TCGA-D3-A8GI-06 14 107083439 107083439 C T IGHV4-59 Nonsense_Mutation p.W55* 0.27 TCGA-D3-A8GI-06 14 107083707 107083707 G A IGHV4-59 5'UTR 0.12 TCGA-D3-A8GI-06 14 107113958 107113958 C T IGHV3-64 Missense_Mutation p.G46E 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-D3-A8GI-06 14 107131052 107131052 G A IGHV3-66 Missense_Mutation p.A110V 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.763) TCGA-D3-A8GI-06 14 107131455 107131455 G A IGHV3-66 Silent p.F9F 0.51 TCGA-D3-A8GI-06 14 107170362 107170362 G A IGHV1-69 Silent p.D2D 0.45 TCGA-D3-A8GI-06 14 107170365 107170365 C T IGHV1-69 Translation_Start_Site p.M1? 0.46 deleterious(0.02) possibly_damaging(0.533) TCGA-D3-A8GI-06 14 107178823 107178823 C T IGHV2-70 Silent p.R118R 0.16 TCGA-D3-A8GI-06 14 107178824 107178824 C T IGHV2-70 Missense_Mutation p.R118Q 0.14 deleterious(0.05) benign(0.01) TCGA-D3-A8GI-06 14 107179105 107179105 C T IGHV2-70 Silent p.R24R 0.38 TCGA-D3-A8GI-06 14 19378249 19378249 C T OR11H12 Missense_Mutation p.S219L 0.39 deleterious(0.01) benign(0.12) TCGA-D3-A8GI-06 14 19553664 19553664 C T POTEG Missense_Mutation p.S83F 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GI-06 14 19553825 19553825 C T POTEG Nonsense_Mutation p.R137* 0.08 TCGA-D3-A8GI-06 14 19574327 19574327 G A POTEG Missense_Mutation p.D462N 0.25 tolerated(0.13) benign(0.034) TCGA-D3-A8GI-06 14 20249078 20249078 G A OR4M1 Missense_Mutation p.M199I 0.24 tolerated(0.24) possibly_damaging(0.479) TCGA-D3-A8GI-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.45 deleterious(0.01) benign(0.048) TCGA-D3-A8GI-06 14 20249324 20249324 C T OR4M1 Silent p.F281F 0.49 TCGA-D3-A8GI-06 14 20389021 20389021 C T OR4K5 Silent p.L86L 0.30 TCGA-D3-A8GI-06 14 20389292 20389292 G A OR4K5 Missense_Mutation p.S176N 0.52 tolerated(0.09) probably_damaging(1) TCGA-D3-A8GI-06 14 20404762 20404762 G A OR4K1 3'UTR 0.42 TCGA-D3-A8GI-06 14 20404763 20404763 G A OR4K1 3'UTR 0.42 TCGA-D3-A8GI-06 14 20443896 20443896 G A OR4K15 Silent p.V73V 0.12 TCGA-D3-A8GI-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.72 TCGA-D3-A8GI-06 14 20483179 20483179 G A OR4K14 Silent p.S58S 0.43 TCGA-D3-A8GI-06 14 20502268 20502268 G A OR4K13 Missense_Mutation p.S217F 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 14 20502663 20502663 G A OR4K13 Silent p.F85F 0.45 TCGA-D3-A8GI-06 14 20585967 20585967 C T OR4K17 Silent p.L134L 0.54 TCGA-D3-A8GI-06 14 20586563 20586563 G A OR4K17 Nonsense_Mutation p.W333* 0.27 TCGA-D3-A8GI-06 14 20612149 20612149 C T OR4N5 Silent p.F85F 0.26 TCGA-D3-A8GI-06 14 20612564 20612564 C T OR4N5 Missense_Mutation p.R224C 0.58 tolerated(0.09) possibly_damaging(0.832) TCGA-D3-A8GI-06 14 20692511 20692511 C T OR11H6 Missense_Mutation p.L215F 0.64 tolerated(0.19) benign(0.013) TCGA-D3-A8GI-06 14 20711775 20711775 G A OR11H4 Silent p.G275G 0.24 TCGA-D3-A8GI-06 14 20920603 20920603 G A OSGEP Silent p.F40F 0.56 TCGA-D3-A8GI-06 14 21058585 21058585 C T RNASE12 Missense_Mutation p.E100K 0.21 tolerated(0.27) benign(0.018) TCGA-D3-A8GI-06 14 21109413 21109413 C T OR6S1 Silent p.V146V 0.23 TCGA-D3-A8GI-06 14 21238820 21238820 C T EDDM3B 3'UTR 0.75 TCGA-D3-A8GI-06 14 21250252 21250252 C T RNASE6 Missense_Mutation p.P132S 0.50 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GI-06 14 21488085 21488085 G A NDRG2 Silent p.F202F 0.60 TCGA-D3-A8GI-06 14 21558701 21558701 T C ZNF219 Silent p.E721E 0.48 TCGA-D3-A8GI-06 14 21825486 21825486 G A SUPT16H Missense_Mutation p.H844Y 0.56 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 14 21870278 21870278 C A CHD8 Missense_Mutation p.K1300N 0.18 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 14 21871742 21871742 G A CHD8 Missense_Mutation p.R1130C 0.40 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 14 21928506 21928506 G A RAB2B 3'UTR 0.52 TCGA-D3-A8GI-06 14 21990202 21990202 G A SALL2 3'UTR 0.73 TCGA-D3-A8GI-06 14 21990948 21990948 G A SALL2 Missense_Mutation p.H972Y 0.21 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-D3-A8GI-06 14 22102810 22102810 G A OR10G2 Silent p.P63P 0.44 TCGA-D3-A8GI-06 14 22133660 22133660 C T OR4E2 Missense_Mutation p.R122C 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 14 22133789 22133789 C T OR4E2 Missense_Mutation p.R165C 0.54 deleterious(0.03) probably_damaging(0.973) TCGA-D3-A8GI-06 14 22180902 22180902 C T TRAV2 Silent p.F58F 0.28 TCGA-D3-A8GI-06 14 22192112 22192112 C T TRAV3 5'UTR 0.50 TCGA-D3-A8GI-06 14 22217917 22217917 G A TRAV5 Missense_Mutation p.D90N 0.56 tolerated(0.15) benign(0.008) TCGA-D3-A8GI-06 14 22265851 22265851 C T TRAV8-1 Missense_Mutation p.S45F 0.26 deleterious(0.01) benign(0.225) TCGA-D3-A8GI-06 14 22266005 22266005 G A TRAV8-1 Silent p.R96R 0.61 TCGA-D3-A8GI-06 14 22293689 22293689 G A TRAV10 Silent p.T6T 0.46 TCGA-D3-A8GI-06 14 22309432 22309432 C T TRAV12-1 Missense_Mutation p.S3F 0.58 deleterious(0) unknown(0) TCGA-D3-A8GI-06 14 22309854 22309854 G A TRAV12-1 Missense_Mutation p.G79R 0.50 tolerated(0.06) possibly_damaging(0.828) TCGA-D3-A8GI-06 14 22309855 22309855 G A TRAV12-1 Missense_Mutation p.G79E 0.51 tolerated(0.06) possibly_damaging(0.828) TCGA-D3-A8GI-06 14 22434020 22434020 G A TRAV12-3 Missense_Mutation p.E25K 0.42 tolerated(0.43) benign(0.016) TCGA-D3-A8GI-06 14 22476403 22476403 C T TRAV19 Silent p.F111F 0.85 TCGA-D3-A8GI-06 14 22538961 22538961 G A TRAV22 Silent p.R3R 0.75 TCGA-D3-A8GI-06 14 22580325 22580325 C T TRAV25 5'UTR 0.34 TCGA-D3-A8GI-06 14 22600937 22600937 G A TRAV8-7 Silent p.R94R 0.65 TCGA-D3-A8GI-06 14 22971253 22971253 G A TRAJ38 Missense_Mutation p.G14E 0.24 unknown(0) TCGA-D3-A8GI-06 14 22989395 22989395 G A TRAJ23 Missense_Mutation p.%3D 0.29 TCGA-D3-A8GI-06 14 23235903 23235903 C T OXA1L Missense_Mutation p.P58L 0.55 deleterious_low_confidence(0.01) benign(0.146) TCGA-D3-A8GI-06 14 23511866 23511866 C T PSMB11 Silent p.L144L 0.60 TCGA-D3-A8GI-06 14 23523521 23523521 G A CDH24 Silent p.S267S 0.62 TCGA-D3-A8GI-06 14 23634518 23634518 G A SLC7A8 Missense_Mutation p.R162W 0.38 deleterious(0) benign(0.037) TCGA-D3-A8GI-06 14 23745421 23745421 G A HOMEZ Missense_Mutation p.S339L 0.20 tolerated(0.06) benign(0.02) TCGA-D3-A8GI-06 14 23793461 23793461 A G PABPN1 Missense_Mutation p.S282G 0.56 tolerated(0.34) benign(0.006) TCGA-D3-A8GI-06 14 23793672 23793672 C T PABPN1 Intron 0.78 TCGA-D3-A8GI-06 14 23886190 23886190 C T MYH7 Missense_Mutation p.D1511N 0.65 tolerated(0.09) probably_damaging(0.996) TCGA-D3-A8GI-06 14 23886464 23886464 C T MYH7 Missense_Mutation p.E1473K 0.45 deleterious(0.04) probably_damaging(0.987) TCGA-D3-A8GI-06 14 24518517 24518517 G A LRRC16B 5'Flank 0.38 TCGA-D3-A8GI-06 14 24523001 24523001 G A LRRC16B Missense_Mutation p.D42N 0.38 tolerated(0.8) benign(0.047) TCGA-D3-A8GI-06 14 24534920 24534920 G A LRRC16B Silent p.L1162L 0.56 TCGA-D3-A8GI-06 14 24534921 24534921 G A LRRC16B Missense_Mutation p.E1163K 0.56 tolerated(0.58) unknown(0) TCGA-D3-A8GI-06 14 24545388 24545388 G A CPNE6 Missense_Mutation p.D319N 0.49 tolerated(0.41) benign(0.225) TCGA-D3-A8GI-06 14 24620500 24620500 C T RNF31 Missense_Mutation p.S550F 0.26 deleterious(0) possibly_damaging(0.646) TCGA-D3-A8GI-06 14 24679100 24679100 C T CHMP4A Missense_Mutation p.A261T 0.55 tolerated(0.2) benign(0.025) TCGA-D3-A8GI-06 14 24787972 24787972 C T ADCY4 Missense_Mutation p.G990E 0.23 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GI-06 14 24793300 24793300 G A ADCY4 Missense_Mutation p.L672F 0.23 tolerated(0.49) possibly_damaging(0.657) TCGA-D3-A8GI-06 14 24805507 24805507 C T RIPK3 Nonsense_Mutation p.W477* 0.28 TCGA-D3-A8GI-06 14 24808428 24808428 G A RIPK3 Silent p.P88P 0.63 TCGA-D3-A8GI-06 14 24808455 24808455 G A RIPK3 Silent p.I79I 0.58 TCGA-D3-A8GI-06 14 24808770 24808770 G A RIPK3 Silent p.I18I 0.54 TCGA-D3-A8GI-06 14 24838971 24838971 C T NFATC4 Missense_Mutation p.P186S 0.64 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GI-06 14 24845793 24845793 C T NFATC4 Missense_Mutation p.P847S 0.67 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-D3-A8GI-06 14 25043680 25043680 C T CTSG Missense_Mutation p.R122Q 0.34 tolerated(0.45) benign(0.071) TCGA-D3-A8GI-06 14 25102200 25102200 C T GZMB Missense_Mutation p.D42N 0.58 tolerated(0.53) benign(0.003) TCGA-D3-A8GI-06 14 26917878 26917878 G A NOVA1 Missense_Mutation p.P271S 0.39 deleterious(0.02) unknown(0) TCGA-D3-A8GI-06 14 28733805 28733805 G A BNIP3P1 RNA 0.51 TCGA-D3-A8GI-06 14 28734037 28734037 C T BNIP3P1 RNA 0.27 TCGA-D3-A8GI-06 14 31122716 31122716 C T SCFD1 Silent p.V259V 0.33 TCGA-D3-A8GI-06 14 31353829 31353829 G A COCH Missense_Mutation p.E234K 0.62 tolerated(1) probably_damaging(0.999) TCGA-D3-A8GI-06 14 31549842 31549842 C T AP4S1 Missense_Mutation p.P120S 0.59 tolerated(0.29) benign(0.012) TCGA-D3-A8GI-06 14 33201815 33201815 A G AKAP6 Intron 0.30 TCGA-D3-A8GI-06 14 33291658 33291658 G T AKAP6 Nonsense_Mutation p.E1547* 0.56 TCGA-D3-A8GI-06 14 33292112 33292112 C T AKAP6 Missense_Mutation p.S1698F 0.49 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 14 35182530 35182530 G A CFL2 Nonsense_Mutation p.R81* 0.51 TCGA-D3-A8GI-06 14 35492234 35492234 C T SRP54 Silent p.T425T 0.29 TCGA-D3-A8GI-06 14 37198738 37198738 C T SLC25A21 Missense_Mutation p.G102R 0.53 tolerated(0.56) benign(0.082) TCGA-D3-A8GI-06 14 38266114 38266114 C T TTC6 Silent p.L1331L 0.34 TCGA-D3-A8GI-06 14 38310695 38310695 G A TTC6 Missense_Mutation p.E1782K 0.48 deleterious(0.01) possibly_damaging(0.646) TCGA-D3-A8GI-06 14 38723753 38723753 C T CLEC14A 3'UTR 0.29 TCGA-D3-A8GI-06 14 38724397 38724397 G A CLEC14A Silent p.F277F 0.61 TCGA-D3-A8GI-06 14 39716133 39716133 C T MIA2 Missense_Mutation p.L119F 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GI-06 14 39819363 39819363 C T CTAGE5 Silent p.F775F 0.52 TCGA-D3-A8GI-06 14 42356124 42356124 G A LRFN5 Missense_Mutation p.R99Q 0.51 tolerated(0.13) possibly_damaging(0.473) TCGA-D3-A8GI-06 14 42356315 42356315 C T LRFN5 Missense_Mutation p.P163S 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 14 42357144 42357144 G A LRFN5 Missense_Mutation p.R439K 0.28 tolerated(0.32) benign(0.082) TCGA-D3-A8GI-06 14 47120879 47120879 G A RPL10L Missense_Mutation p.R21C 0.31 tolerated(0.11) benign(0.013) TCGA-D3-A8GI-06 14 50074119 50074119 C T LRR1 Missense_Mutation p.A95V 0.47 deleterious(0.01) benign(0.323) TCGA-D3-A8GI-06 14 50576425 50576425 G A VCPKMT Missense_Mutation p.P228S 0.26 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-D3-A8GI-06 14 50579403 50579403 G A VCPKMT Missense_Mutation p.P202L 0.47 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 14 50798913 50798913 C T CDKL1 Intron 0.61 TCGA-D3-A8GI-06 14 50805710 50805710 C T CDKL1 Silent p.T232T 0.29 TCGA-D3-A8GI-06 14 51088608 51088608 C T ATL1 Silent p.S346S 0.55 TCGA-D3-A8GI-06 14 51219427 51219427 G A NIN Nonsense_Mutation p.Q1587* 0.20 TCGA-D3-A8GI-06 14 51223728 51223728 G A NIN Silent p.V1340V 0.26 TCGA-D3-A8GI-06 14 51561050 51561050 G A TRIM9 Missense_Mutation p.P203L 0.82 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 14 52957679 52957679 G A TXNDC16 Silent p.L267L 0.50 TCGA-D3-A8GI-06 14 55462346 55462346 G A WDHD1 Silent p.I376I 0.20 TCGA-D3-A8GI-06 14 56084686 56084686 C T KTN1 Silent p.F222F 0.62 TCGA-D3-A8GI-06 14 57268974 57268974 G A OTX2 Missense_Mutation p.P125S 0.24 tolerated(0.06) possibly_damaging(0.465) TCGA-D3-A8GI-06 14 58056038 58056038 G A SLC35F4 Silent p.F197F 0.23 TCGA-D3-A8GI-06 14 59108343 59108343 C T DACT1 Missense_Mutation p.S171F 0.26 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 14 60749923 60749923 A G PPM1A Missense_Mutation p.N241D 0.45 tolerated(0.12) benign(0.062) TCGA-D3-A8GI-06 14 60945101 60945101 C T C14orf39 Silent p.K80K 0.12 TCGA-D3-A8GI-06 14 60950461 60950461 C T C14orf39 Missense_Mutation p.E61K 0.38 deleterious(0.05) possibly_damaging(0.801) TCGA-D3-A8GI-06 14 62462965 62462965 G A SYT16 Nonsense_Mutation p.W76* 0.50 TCGA-D3-A8GI-06 14 62550918 62550918 G A SYT16 Missense_Mutation p.G480E 0.30 tolerated(0.13) benign(0.273) TCGA-D3-A8GI-06 14 62550966 62550966 C T SYT16 Missense_Mutation p.S496L 0.30 tolerated(0.09) benign(0.099) TCGA-D3-A8GI-06 14 63175092 63175092 G A KCNH5 Missense_Mutation p.P701S 0.23 tolerated(0.14) probably_damaging(0.996) TCGA-D3-A8GI-06 14 63269194 63269194 G A KCNH5 Silent p.L559L 0.61 TCGA-D3-A8GI-06 14 63417167 63417167 G A KCNH5 Silent p.L351L 0.23 TCGA-D3-A8GI-06 14 64608215 64608215 C T SYNE2 Missense_Mutation p.P5045S 0.51 probably_damaging(0.983) TCGA-D3-A8GI-06 14 64608216 64608216 C T SYNE2 Missense_Mutation p.P5045L 0.50 probably_damaging(0.994) TCGA-D3-A8GI-06 14 65032134 65032134 G A PPP1R36 Missense_Mutation p.R110Q 0.51 tolerated(0.18) benign(0.313) TCGA-D3-A8GI-06 14 65054924 65054924 C T PPP1R36 Silent p.V331V 0.30 TCGA-D3-A8GI-06 14 65234551 65234551 C T SPTB Missense_Mutation p.D2017N 0.41 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GI-06 14 65240133 65240133 G A SPTB Silent p.I1661I 0.28 TCGA-D3-A8GI-06 14 65253852 65253852 G A SPTB Missense_Mutation p.S944L 0.57 tolerated(0.08) benign(0.008) TCGA-D3-A8GI-06 14 65268981 65268981 C T SPTB Missense_Mutation p.D177N 0.29 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 14 66209111 66209111 C T FUT8 Missense_Mutation p.P571S 0.47 tolerated(0.2) benign(0.044) TCGA-D3-A8GI-06 14 67346724 67346724 A T GPHN Missense_Mutation p.N121I 0.52 deleterious(0.03) benign(0.066) TCGA-D3-A8GI-06 14 67646361 67646361 C T GPHN Nonsense_Mutation p.Q716* 0.54 TCGA-D3-A8GI-06 14 68193810 68193810 C T RDH12 Silent p.D187D 0.69 TCGA-D3-A8GI-06 14 68217667 68217667 G A ZFYVE26 Intron 0.30 TCGA-D3-A8GI-06 14 69808422 69808422 G A GALNT16 Silent p.R404R 0.67 TCGA-D3-A8GI-06 14 70420202 70420202 G A SMOC1 Missense_Mutation p.E111K 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-D3-A8GI-06 14 70459180 70459180 C T SMOC1 Silent p.F191F 0.54 TCGA-D3-A8GI-06 14 70461172 70461172 G T SMOC1 Silent p.L213L 0.25 TCGA-D3-A8GI-06 14 70634597 70634597 G A SLC8A3 Silent p.I181I 0.64 TCGA-D3-A8GI-06 14 70635016 70635016 C T SLC8A3 Missense_Mutation p.G42R 0.70 tolerated(0.07) benign(0.082) TCGA-D3-A8GI-06 14 70713715 70713715 G A ADAM21P1 RNA 0.40 TCGA-D3-A8GI-06 14 70714267 70714267 G A ADAM21P1 RNA 0.30 TCGA-D3-A8GI-06 14 70924358 70924358 G A ADAM21 Missense_Mutation p.V48M 0.51 deleterious(0.04) possibly_damaging(0.758) TCGA-D3-A8GI-06 14 70925183 70925183 G A ADAM21 Missense_Mutation p.G323R 0.50 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GI-06 14 71197195 71197195 C T MAP3K9 Missense_Mutation p.E1087K 0.55 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 14 71199294 71199294 C T MAP3K9 Missense_Mutation p.S945N 0.55 tolerated(0.24) possibly_damaging(0.466) TCGA-D3-A8GI-06 14 71199350 71199350 G A MAP3K9 Silent p.H926H 0.27 TCGA-D3-A8GI-06 14 72152143 72152143 G A SIPA1L1 Missense_Mutation p.E1057K 0.26 deleterious(0.02) benign(0.207) TCGA-D3-A8GI-06 14 73137981 73137981 A G DPF3 Silent p.L313L 0.38 TCGA-D3-A8GI-06 14 73448548 73448548 G A ZFYVE1 Missense_Mutation p.S420F 0.64 deleterious(0.03) possibly_damaging(0.519) TCGA-D3-A8GI-06 14 74205584 74205584 G A ELMSAN1 Silent p.F376F 0.22 TCGA-D3-A8GI-06 14 74206696 74206696 G A ELMSAN1 Nonsense_Mutation p.Q6* 0.57 TCGA-D3-A8GI-06 14 74762655 74762655 G A ABCD4 Silent p.I190I 0.13 TCGA-D3-A8GI-06 14 74876175 74876175 G A SYNDIG1L Silent p.F91F 0.51 TCGA-D3-A8GI-06 14 74988672 74988672 G A LTBP2 Silent p.S910S 0.27 TCGA-D3-A8GI-06 14 74988673 74988673 G A LTBP2 Missense_Mutation p.S910F 0.27 tolerated(0.06) probably_damaging(0.928) TCGA-D3-A8GI-06 14 74989553 74989553 C T LTBP2 Missense_Mutation p.G867R 0.50 deleterious(0.04) benign(0.376) TCGA-D3-A8GI-06 14 75019751 75019751 C T LTBP2 Missense_Mutation p.E346K 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 14 75265135 75265135 C T YLPM1 Silent p.I1045I 0.46 TCGA-D3-A8GI-06 14 75323696 75323696 G A PROX2 Silent p.F245F 0.54 TCGA-D3-A8GI-06 14 75359620 75359620 C T DLST Missense_Mutation p.P176S 0.29 tolerated(0.27) benign(0) TCGA-D3-A8GI-06 14 76286431 76286431 C T TTLL5 Missense_Mutation p.P1085S 0.31 tolerated(0.14) benign(0.23) TCGA-D3-A8GI-06 14 77709271 77709271 T A TMEM63C Missense_Mutation p.F405I 0.26 tolerated(0.45) benign(0.039) TCGA-D3-A8GI-06 14 77723031 77723031 G A TMEM63C Missense_Mutation p.E795K 0.19 deleterious(0.04) benign(0.146) TCGA-D3-A8GI-06 14 77767581 77767581 G A POMT2 Missense_Mutation p.A223V 0.24 tolerated(0.51) benign(0.023) TCGA-D3-A8GI-06 14 77818025 77818025 G A TMED8 Missense_Mutation p.S63L 0.54 tolerated_low_confidence(0.07) possibly_damaging(0.492) TCGA-D3-A8GI-06 14 77944940 77944940 G A ISM2 Silent p.T364T 0.29 TCGA-D3-A8GI-06 14 79111466 79111466 G A NRXN3 5'UTR 0.25 TCGA-D3-A8GI-06 14 79111546 79111546 G A NRXN3 5'UTR 0.38 TCGA-D3-A8GI-06 14 79175599 79175599 C T NRXN3 Missense_Mutation p.R48C 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 14 79933703 79933703 C T NRXN3 Silent p.I761I 0.16 TCGA-D3-A8GI-06 14 80669289 80669289 C T DIO2 Missense_Mutation p.E225K 0.20 deleterious(0) possibly_damaging(0.491) TCGA-D3-A8GI-06 14 81297532 81297532 C T CEP128 Missense_Mutation p.M388I 0.57 tolerated(0.69) benign(0.073) TCGA-D3-A8GI-06 14 86088934 86088934 C T FLRT2 Missense_Mutation p.S359F 0.26 deleterious(0.01) possibly_damaging(0.535) TCGA-D3-A8GI-06 14 88792767 88792767 G A KCNK10 5'Flank 0.27 TCGA-D3-A8GI-06 14 90446944 90446944 C T TDP1 Silent p.L284L 0.63 TCGA-D3-A8GI-06 14 90754720 90754720 A C NRDE2 Missense_Mutation p.L1000R 0.64 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 14 91386651 91386651 T A RPS6KA5 Silent p.A235A 0.24 TCGA-D3-A8GI-06 14 92140539 92140539 C T CATSPERB Missense_Mutation p.R320K 0.28 tolerated(0.42) benign(0.147) TCGA-D3-A8GI-06 14 92265364 92265364 C T TC2N Silent p.R202R 0.53 TCGA-D3-A8GI-06 14 92265365 92265365 C T TC2N Missense_Mutation p.R202K 0.52 tolerated(0.53) benign(0.009) TCGA-D3-A8GI-06 14 92268705 92268705 C T TC2N Missense_Mutation p.G121E 0.47 tolerated(0.18) benign(0.075) TCGA-D3-A8GI-06 14 92361323 92361323 C T FBLN5 Missense_Mutation p.G158E 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 14 93581463 93581463 C T ITPK1 Missense_Mutation p.E16K 0.35 deleterious(0.01) benign(0.028) TCGA-D3-A8GI-06 14 93673508 93673508 C T UBR7 5'UTR 0.33 TCGA-D3-A8GI-06 14 93677052 93677052 C T RP11-371E8.4 Missense_Mutation p.P134S 0.59 tolerated(0.07) benign(0.236) TCGA-D3-A8GI-06 14 94088337 94088337 G A UNC79 Missense_Mutation p.M1409I 0.32 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-D3-A8GI-06 14 94160742 94160742 C T UNC79 Missense_Mutation p.S2373L 0.18 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 14 94173074 94173074 C T UNC79 Missense_Mutation p.R2401C 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 14 94395294 94395294 G A FAM181A Silent p.Q283Q 0.45 TCGA-D3-A8GI-06 14 94716540 94716540 G A PPP4R4 Missense_Mutation p.R548Q 0.52 deleterious(0.01) possibly_damaging(0.518) TCGA-D3-A8GI-06 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.27 TCGA-D3-A8GI-06 14 94770934 94770934 G A SERPINA6 Missense_Mutation p.H347Y 0.47 deleterious(0.03) probably_damaging(0.952) TCGA-D3-A8GI-06 14 94776090 94776090 G A SERPINA6 Silent p.S289S 0.55 TCGA-D3-A8GI-06 14 94780664 94780664 C T SERPINA6 Missense_Mutation p.G108S 0.33 tolerated(0.25) benign(0.08) TCGA-D3-A8GI-06 14 94936040 94936040 G A SERPINA9 Silent p.S64S 0.53 TCGA-D3-A8GI-06 14 94953736 94953736 G A SERPINA12 Silent p.V383V 0.29 TCGA-D3-A8GI-06 14 94964249 94964249 G A SERPINA12 Silent p.T162T 0.30 TCGA-D3-A8GI-06 14 95029867 95029867 C T SERPINA4 Silent p.A16A 0.32 TCGA-D3-A8GI-06 14 95033384 95033384 G A SERPINA4 Missense_Mutation p.V243M 0.53 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 14 95085803 95085803 C T SERPINA3 Silent p.F305F 0.42 TCGA-D3-A8GI-06 14 95088710 95088710 C T SERPINA3 Missense_Mutation p.S317F 0.51 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GI-06 14 95109987 95109987 C T SERPINA13P RNA 0.16 TCGA-D3-A8GI-06 14 95234866 95234866 C T GSC Missense_Mutation p.E246K 0.52 tolerated_low_confidence(0.43) benign(0.002) TCGA-D3-A8GI-06 14 95912323 95912323 G A SYNE3 Silent p.L519L 0.29 TCGA-D3-A8GI-06 14 96730119 96730119 G A BDKRB1 Missense_Mutation p.D34N 0.28 tolerated(0.12) benign(0.066) TCGA-D3-A8GI-06 14 96730250 96730250 C T BDKRB1 Silent p.A77A 0.31 TCGA-D3-A8GI-06 14 96730546 96730546 G A BDKRB1 Missense_Mutation p.R176Q 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 14 99183698 99183698 G A C14orf177 3'UTR 0.43 TCGA-D3-A8GI-06 15 100594219 100594219 C T ADAMTS17 Nonsense_Mutation p.W726* 0.47 TCGA-D3-A8GI-06 15 100821558 100821558 C T ADAMTS17 Missense_Mutation p.R222Q 0.57 tolerated(0.18) probably_damaging(0.99) TCGA-D3-A8GI-06 15 101569414 101569414 C T LRRK1 Silent p.I980I 0.26 TCGA-D3-A8GI-06 15 101775525 101775525 G A CHSY1 Missense_Mutation p.P193L 0.39 deleterious(0.02) benign(0.078) TCGA-D3-A8GI-06 15 101938708 101938708 G A PCSK6 Silent p.I298I 0.51 TCGA-D3-A8GI-06 15 101972274 101972274 C T PCSK6 Missense_Mutation p.R144Q 0.35 deleterious(0.02) possibly_damaging(0.674) TCGA-D3-A8GI-06 15 102182631 102182631 G A TM2D3 3'UTR 0.33 TCGA-D3-A8GI-06 15 20496624 20496624 G A CHEK2P2 RNA 0.12 TCGA-D3-A8GI-06 15 20496639 20496639 G A CHEK2P2 RNA 0.11 TCGA-D3-A8GI-06 15 20496745 20496745 C T CHEK2P2 RNA 0.10 TCGA-D3-A8GI-06 15 20642572 20642572 C T HERC2P3 RNA 0.32 TCGA-D3-A8GI-06 15 20642630 20642630 G A HERC2P3 RNA 0.39 TCGA-D3-A8GI-06 15 20644857 20644857 C T HERC2P3 RNA 0.41 TCGA-D3-A8GI-06 15 20651127 20651127 C T HERC2P3 RNA 0.18 TCGA-D3-A8GI-06 15 21071312 21071312 C T POTEB2 Missense_Mutation p.R100Q 0.14 tolerated(0.5) possibly_damaging(0.855) TCGA-D3-A8GI-06 15 22332581 22332581 C T RP11-69H14.6 RNA 0.15 TCGA-D3-A8GI-06 15 22369046 22369046 C T OR4M2 Silent p.I157I 0.16 TCGA-D3-A8GI-06 15 22369195 22369195 C T OR4M2 Missense_Mutation p.S207F 0.19 deleterious(0) possibly_damaging(0.859) TCGA-D3-A8GI-06 15 22369458 22369458 G A OR4M2 Missense_Mutation p.E295K 0.24 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 15 23049266 23049266 G A NIPA1 Missense_Mutation p.P185S 0.48 tolerated(0.09) benign(0.007) TCGA-D3-A8GI-06 15 23311355 23311355 G A HERC2P2 RNA 0.37 TCGA-D3-A8GI-06 15 23811567 23811567 G A MKRN3 Missense_Mutation p.R213Q 0.44 tolerated(0.3) benign(0.024) TCGA-D3-A8GI-06 15 23890575 23890575 G A MAGEL2 Missense_Mutation p.A169V 0.44 deleterious_low_confidence(0) benign(0.073) TCGA-D3-A8GI-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.29 tolerated(0.26) probably_damaging(0.991) TCGA-D3-A8GI-06 15 24922129 24922129 G A NPAP1 Missense_Mutation p.S372N 0.39 tolerated(0.74) benign(0.046) TCGA-D3-A8GI-06 15 24922425 24922425 C T NPAP1 Missense_Mutation p.P471S 0.51 deleterious(0) benign(0.002) TCGA-D3-A8GI-06 15 24922728 24922728 G A NPAP1 Missense_Mutation p.D572N 0.44 tolerated(0.31) benign(0.327) TCGA-D3-A8GI-06 15 24923006 24923006 C T NPAP1 Silent p.A664A 0.34 TCGA-D3-A8GI-06 15 24923207 24923207 G A NPAP1 Silent p.G731G 0.48 TCGA-D3-A8GI-06 15 24923311 24923311 C T NPAP1 Missense_Mutation p.P766L 0.38 deleterious(0.03) probably_damaging(0.947) TCGA-D3-A8GI-06 15 24923499 24923499 C T NPAP1 Missense_Mutation p.P829S 0.41 tolerated(0.3) benign(0.036) TCGA-D3-A8GI-06 15 25304844 25304844 C T SNORD116-3 3'Flank 0.41 TCGA-D3-A8GI-06 15 25315651 25315651 C T SNORD116-8 RNA 0.45 TCGA-D3-A8GI-06 15 25330371 25330371 G A SNORD116-18 5'Flank 0.50 TCGA-D3-A8GI-06 15 25336937 25336937 C T SNORD116-23 RNA 0.45 TCGA-D3-A8GI-06 15 25417780 25417780 T C SNORD115-3 5'Flank 0.42 TCGA-D3-A8GI-06 15 25423890 25423890 G A SNORD115-5 RNA 0.88 TCGA-D3-A8GI-06 15 25436568 25436568 G A SNORD115-12 RNA 0.48 TCGA-D3-A8GI-06 15 25448247 25448247 C T SNORD115-20 5'Flank 0.52 TCGA-D3-A8GI-06 15 25449281 25449281 C A SNORD115-20 5'Flank 0.75 TCGA-D3-A8GI-06 15 25449570 25449570 G A SNORD115-19 RNA 0.31 TCGA-D3-A8GI-06 15 25451343 25451343 C T SNORD115-22 5'Flank 0.41 TCGA-D3-A8GI-06 15 25463546 25463546 C T SNORD115-27 5'Flank 0.36 TCGA-D3-A8GI-06 15 25463725 25463725 C T SNORD115-27 5'Flank 0.49 TCGA-D3-A8GI-06 15 25472080 25472080 G A SNORD115-33 5'Flank 0.36 TCGA-D3-A8GI-06 15 25475901 25475901 C T SNORD115-33 5'Flank 0.59 TCGA-D3-A8GI-06 15 25488589 25488589 G A SNORD115-40 5'Flank 0.43 TCGA-D3-A8GI-06 15 25490679 25490679 C T SNORD115-41 RNA 0.37 TCGA-D3-A8GI-06 15 25620721 25620721 G A UBE3A Silent p.P87P 0.45 TCGA-D3-A8GI-06 15 28211884 28211884 G A OCA2 Missense_Mutation p.L530F 0.44 tolerated(0.09) probably_damaging(0.919) TCGA-D3-A8GI-06 15 28478684 28478684 G A HERC2 Missense_Mutation p.H1459Y 0.41 benign(0.139) TCGA-D3-A8GI-06 15 28599989 28599989 G A RP11-483E23.2 RNA 0.31 TCGA-D3-A8GI-06 15 29346935 29346935 C T APBA2 Missense_Mutation p.S283L 0.41 deleterious_low_confidence(0) benign(0.152) TCGA-D3-A8GI-06 15 31206141 31206141 C T FAN1 Missense_Mutation p.S553L 0.34 deleterious(0) possibly_damaging(0.755) TCGA-D3-A8GI-06 15 32917707 32917707 C T ARHGAP11A Silent p.I245I 0.37 TCGA-D3-A8GI-06 15 32988775 32988775 C T SCG5 Missense_Mutation p.P202S 0.21 deleterious_low_confidence(0.04) benign(0.04) TCGA-D3-A8GI-06 15 33916114 33916114 G A RYR3 Missense_Mutation p.E822K 0.48 probably_damaging(0.997) TCGA-D3-A8GI-06 15 33951923 33951923 G A RYR3 Silent p.V1437V 0.39 TCGA-D3-A8GI-06 15 34034597 34034597 C T RYR3 Silent p.I2617I 0.44 TCGA-D3-A8GI-06 15 34394012 34394012 G A EMC7 Missense_Mutation p.P10L 0.45 tolerated_low_confidence(0.39) benign(0) TCGA-D3-A8GI-06 15 34542540 34542540 G A SLC12A6 Silent p.V536V 0.37 TCGA-D3-A8GI-06 15 34654841 34654841 G A LPCAT4 Missense_Mutation p.H273Y 0.43 tolerated(0.08) benign(0.153) TCGA-D3-A8GI-06 15 34657231 34657231 G A LPCAT4 Silent p.N152N 0.38 TCGA-D3-A8GI-06 15 34673748 34673748 G A GOLGA8A Missense_Mutation p.S559F 0.11 deleterious(0) benign(0.254) TCGA-D3-A8GI-06 15 34673749 34673749 A T GOLGA8A Missense_Mutation p.S559T 0.11 deleterious(0.01) benign(0.07) TCGA-D3-A8GI-06 15 35273578 35273578 G A ZNF770 Silent p.A686A 0.49 TCGA-D3-A8GI-06 15 35273579 35273579 G A ZNF770 Missense_Mutation p.A686V 0.49 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GI-06 15 37390220 37390220 T C MEIS2 Missense_Mutation p.M65V 0.42 tolerated(0.37) benign(0.008) TCGA-D3-A8GI-06 15 38243226 38243248 TCTCTTTTTAGGATTTTTTGCTG - TMCO5A Splice_Site p.X223_splice 0.23 TCGA-D3-A8GI-06 15 39876308 39876308 G A THBS1 Missense_Mutation p.D275N 0.42 deleterious(0.05) benign(0.005) TCGA-D3-A8GI-06 15 39885299 39885299 G A THBS1 Missense_Mutation p.D956N 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 40099331 40099331 G A GPR176 Missense_Mutation p.L101F 0.50 deleterious(0.04) possibly_damaging(0.766) TCGA-D3-A8GI-06 15 40226525 40226525 G A EIF2AK4 Silent p.P43P 0.22 TCGA-D3-A8GI-06 15 40309365 40309365 C T EIF2AK4 Silent p.F1329F 0.41 TCGA-D3-A8GI-06 15 40468866 40468866 C T BUB1B Silent p.S191S 0.39 TCGA-D3-A8GI-06 15 40476062 40476062 C T BUB1B Silent p.I243I 0.60 TCGA-D3-A8GI-06 15 40544732 40544732 G A C15orf56 Silent p.A80A 0.40 TCGA-D3-A8GI-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.46 deleterious_low_confidence(0.01) benign(0.118) TCGA-D3-A8GI-06 15 40947114 40947114 C T CASC5 Silent p.F2167F 0.31 TCGA-D3-A8GI-06 15 40949272 40949272 C T CASC5 Missense_Mutation p.H2199Y 0.29 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 15 41146868 41146868 C T SPINT1 Silent p.I382I 0.37 TCGA-D3-A8GI-06 15 41192889 41192889 C T VPS18 Nonsense_Mutation p.Q625* 0.43 TCGA-D3-A8GI-06 15 42147494 42147494 G A SPTBN5 Silent p.L3117L 0.32 TCGA-D3-A8GI-06 15 42169470 42169470 G A SPTBN5 Silent p.V1185V 0.38 TCGA-D3-A8GI-06 15 43638163 43638163 C T ADAL Silent p.L179L 0.33 TCGA-D3-A8GI-06 15 43826676 43826676 G A PPIP5K1 3'UTR 0.50 TCGA-D3-A8GI-06 15 43891083 43891083 G A CKMT1B Missense_Mutation p.G357E 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 43990267 43990267 G A CKMT1A Missense_Mutation p.G311E 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 44673111 44673111 C T CASC4 Nonsense_Mutation p.Q337* 0.49 TCGA-D3-A8GI-06 15 45398524 45398524 C T DUOX2 Silent p.A649A 0.33 TCGA-D3-A8GI-06 15 45399629 45399629 C T DUOX2 Missense_Mutation p.R536Q 0.39 deleterious(0.03) benign(0.058) TCGA-D3-A8GI-06 15 45410131 45410131 C T DUOXA1 Silent p.G376G 0.47 TCGA-D3-A8GI-06 15 45431285 45431285 G A DUOX1 Missense_Mutation p.E379K 0.42 tolerated(0.21) benign(0.003) TCGA-D3-A8GI-06 15 45713328 45713328 C T SPATA5L1 Missense_Mutation p.P728S 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GI-06 15 45965906 45965906 G A SQRDL Silent p.E187E 0.37 TCGA-D3-A8GI-06 15 45974734 45974734 C T SQRDL Missense_Mutation p.P308L 0.44 tolerated(0.06) benign(0.33) TCGA-D3-A8GI-06 15 48719903 48719903 C T FBN1 Silent p.R2355R 0.37 TCGA-D3-A8GI-06 15 49254989 49254989 G A SHC4 Missense_Mutation p.P75L 0.38 tolerated(0.28) benign(0.049) TCGA-D3-A8GI-06 15 49620664 49620664 G A GALK2 3'UTR 0.46 TCGA-D3-A8GI-06 15 49833925 49833925 C T FAM227B Missense_Mutation p.D276N 0.36 tolerated(0.05) possibly_damaging(0.462) TCGA-D3-A8GI-06 15 50535170 50535170 C T HDC Missense_Mutation p.E426K 0.40 tolerated(0.35) benign(0.132) TCGA-D3-A8GI-06 15 50540510 50540510 G A HDC Missense_Mutation p.R358C 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 50873095 50873095 T G TRPM7 Missense_Mutation p.Q1523P 0.38 tolerated_low_confidence(0.05) benign(0.121) TCGA-D3-A8GI-06 15 51276279 51276279 C G AP4E1 Missense_Mutation p.S676C 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 15 51397359 51397359 C T TNFAIP8L3 Silent p.R5R 0.46 TCGA-D3-A8GI-06 15 51504682 51504682 G A CYP19A1 Silent p.Y366Y 0.44 TCGA-D3-A8GI-06 15 51507277 51507277 C T CYP19A1 Silent p.Q337Q 0.40 TCGA-D3-A8GI-06 15 51514660 51514660 G A CYP19A1 Silent p.L172L 0.39 TCGA-D3-A8GI-06 15 51792282 51792282 G A DMXL2 Missense_Mutation p.H1047Y 0.46 tolerated(0.1) benign(0.303) TCGA-D3-A8GI-06 15 52258110 52258110 G A LEO1 Missense_Mutation p.P217L 0.33 deleterious_low_confidence(0.04) benign(0.004) TCGA-D3-A8GI-06 15 52258111 52258111 G A LEO1 Missense_Mutation p.P217S 0.33 tolerated_low_confidence(0.18) benign(0.074) TCGA-D3-A8GI-06 15 52537602 52537602 G A MYO5C Silent p.S709S 0.45 TCGA-D3-A8GI-06 15 53908365 53908365 G A WDR72 Missense_Mutation p.H680Y 0.35 deleterious(0.02) benign(0.157) TCGA-D3-A8GI-06 15 53992026 53992026 C T WDR72 Missense_Mutation p.M562I 0.35 tolerated(0.33) benign(0.008) TCGA-D3-A8GI-06 15 54307515 54307515 A G UNC13C Silent p.K805K 0.53 TCGA-D3-A8GI-06 15 54792344 54792344 G A UNC13C Missense_Mutation p.G1710R 0.30 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D3-A8GI-06 15 54792345 54792345 G A UNC13C Missense_Mutation p.G1710E 0.30 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-D3-A8GI-06 15 55790616 55790616 C T DYX1C1 5'UTR 0.45 TCGA-D3-A8GI-06 15 55976079 55976079 C T PRTG Missense_Mutation p.G150R 0.42 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A8GI-06 15 56981512 56981512 G A ZNF280D Missense_Mutation p.A219V 0.48 tolerated(0.69) benign(0.01) TCGA-D3-A8GI-06 15 57545662 57545662 C T TCF12 Missense_Mutation p.S488L 0.32 tolerated(0.84) benign(0.281) TCGA-D3-A8GI-06 15 57745960 57745960 G A CGNL1 Missense_Mutation p.D712N 0.45 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 15 57837791 57837791 G A CGNL1 Missense_Mutation p.D1168N 0.25 deleterious(0) possibly_damaging(0.845) TCGA-D3-A8GI-06 15 59192038 59192038 C A SLTM Nonsense_Mutation p.E230* 0.38 TCGA-D3-A8GI-06 15 59799517 59799517 G A FAM81A Silent p.T173T 0.18 TCGA-D3-A8GI-06 15 59808999 59808999 G A FAM81A Missense_Mutation p.M314I 0.50 tolerated(1) benign(0.004) TCGA-D3-A8GI-06 15 60745781 60745781 G A NARG2 Intron 0.44 TCGA-D3-A8GI-06 15 62146540 62146540 A - VPS13C 3'UTR 0.32 TCGA-D3-A8GI-06 15 63112793 63112793 C T TLN2 Missense_Mutation p.P2329L 0.53 tolerated(0.06) possibly_damaging(0.768) TCGA-D3-A8GI-06 15 63631093 63631093 G A CA12 Missense_Mutation p.P267S 0.44 tolerated(0.11) benign(0.04) TCGA-D3-A8GI-06 15 63632563 63632563 G A CA12 Missense_Mutation p.S224F 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 64275770 64275770 G A DAPK2 Silent p.V92V 0.49 TCGA-D3-A8GI-06 15 64275920 64275920 C T DAPK2 Silent p.E42E 0.26 TCGA-D3-A8GI-06 15 64737246 64737246 C T TRIP4 Silent p.F539F 0.35 TCGA-D3-A8GI-06 15 64747328 64747328 C T TRIP4 3'UTR 0.44 TCGA-D3-A8GI-06 15 65214173 65214173 C T ANKDD1A Silent p.L107L 0.54 TCGA-D3-A8GI-06 15 65295533 65295533 T A MTFMT Missense_Mutation p.Y346F 0.53 deleterious(0.02) possibly_damaging(0.737) TCGA-D3-A8GI-06 15 65490772 65490772 C T CILP Missense_Mutation p.G618R 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 65499217 65499217 G A CILP Silent p.V109V 0.43 TCGA-D3-A8GI-06 15 65500044 65500044 G A CILP Silent p.P40P 0.33 TCGA-D3-A8GI-06 15 65555540 65555540 G A PARP16 Missense_Mutation p.A213V 0.35 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 15 65685723 65685723 G A IGDCC4 Missense_Mutation p.P621S 0.36 deleterious(0.01) benign(0.13) TCGA-D3-A8GI-06 15 65917960 65917960 C T SLC24A1 Silent p.I514I 0.48 TCGA-D3-A8GI-06 15 66792710 66792710 G A RPL4 Missense_Mutation p.P280S 0.47 deleterious(0.02) probably_damaging(0.913) TCGA-D3-A8GI-06 15 67008814 67008814 C T SMAD6 Silent p.I310I 0.46 TCGA-D3-A8GI-06 15 67713796 67713796 C T IQCH Missense_Mutation p.P796S 0.33 deleterious(0.01) possibly_damaging(0.453) TCGA-D3-A8GI-06 15 68500542 68500542 G A CLN6 Missense_Mutation p.P291L 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 15 68624209 68624209 C T ITGA11 Silent p.K586K 0.41 TCGA-D3-A8GI-06 15 69327832 69327832 C T NOX5 Missense_Mutation p.H332Y 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 69329472 69329472 C T NOX5 Silent p.F431F 0.52 TCGA-D3-A8GI-06 15 69561440 69561440 C T GLCE Missense_Mutation p.P571S 0.38 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 15 72057460 72057460 C T THSD4 Silent p.F897F 0.48 TCGA-D3-A8GI-06 15 72192042 72192042 G A MYO9A Silent p.F1152F 0.31 TCGA-D3-A8GI-06 15 72636316 72636316 G A HEXA 3'UTR 0.39 TCGA-D3-A8GI-06 15 73624571 73624571 C T HCN4 Missense_Mutation p.M424I 0.43 deleterious(0.02) benign(0.126) TCGA-D3-A8GI-06 15 74043540 74043540 G A C15orf59 5'UTR 0.31 TCGA-D3-A8GI-06 15 74235276 74235276 G A LOXL1 Missense_Mutation p.C395Y 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 15 74290358 74290358 C T PML Missense_Mutation p.S48L 0.46 tolerated(0.53) benign(0) TCGA-D3-A8GI-06 15 74364570 74364570 G A GOLGA6A Missense_Mutation p.R528W 0.06 tolerated(0.1) benign(0.002) TCGA-D3-A8GI-06 15 74373019 74373019 T C GOLGA6A Missense_Mutation p.K48E 0.24 deleterious(0.01) benign(0.217) TCGA-D3-A8GI-06 15 74467763 74467763 C T ISLR Silent p.I188I 0.47 TCGA-D3-A8GI-06 15 74481568 74481568 C T STRA6 Silent p.R365R 0.45 TCGA-D3-A8GI-06 15 74630286 74630286 C T CYP11A1 3'UTR 0.27 TCGA-D3-A8GI-06 15 74836719 74836719 C T ARID3B Missense_Mutation p.P148S 0.36 tolerated(0.43) benign(0.006) TCGA-D3-A8GI-06 15 75132595 75132595 G A ULK3 Missense_Mutation p.R226C 0.39 deleterious(0.03) benign(0.091) TCGA-D3-A8GI-06 15 75320597 75320597 C T PPCDC 5'UTR 0.38 TCGA-D3-A8GI-06 15 75498556 75498556 C T C15orf39 Missense_Mutation p.P56L 0.41 deleterious(0.05) benign(0) TCGA-D3-A8GI-06 15 75595016 75595016 G A DNM1P34 RNA 0.33 TCGA-D3-A8GI-06 15 75652105 75652105 G A MAN2C1 Missense_Mutation p.H602Y 0.38 deleterious(0.04) benign(0.028) TCGA-D3-A8GI-06 15 75652106 75652106 G A MAN2C1 Silent p.S601S 0.38 TCGA-D3-A8GI-06 15 75699461 75699461 T A SIN3A Nonsense_Mutation p.K448* 0.35 TCGA-D3-A8GI-06 15 75941996 75941996 C T SNX33 Missense_Mutation p.R185C 0.46 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 15 76073400 76073400 G A RN7SL319P 5'Flank 0.44 TCGA-D3-A8GI-06 15 77346546 77346546 G A TSPAN3 Missense_Mutation p.R136W 0.24 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 15 77406584 77406584 G A PEAK1 Missense_Mutation p.L1719F 0.49 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 15 78322490 78322490 G A TBC1D2B Missense_Mutation p.P236S 0.41 tolerated(0.91) benign(0.051) TCGA-D3-A8GI-06 15 78880751 78880751 C T CHRNA5 Silent p.I133I 0.31 TCGA-D3-A8GI-06 15 79058532 79058532 G C ADAMTS7 Missense_Mutation p.P1241A 0.50 tolerated(0.12) benign(0.219) TCGA-D3-A8GI-06 15 79059332 79059332 C T ADAMTS7 Missense_Mutation p.G974D 0.31 tolerated(0.19) benign(0.139) TCGA-D3-A8GI-06 15 79277360 79277360 C T RASGRF1 Missense_Mutation p.V1151I 0.50 deleterious(0.04) possibly_damaging(0.832) TCGA-D3-A8GI-06 15 79298560 79298560 G A RASGRF1 Silent p.I694I 0.44 TCGA-D3-A8GI-06 15 79356881 79356881 G A RASGRF1 Intron 0.44 TCGA-D3-A8GI-06 15 79750382 79750382 C T KIAA1024 Silent p.D631D 0.37 TCGA-D3-A8GI-06 15 80472506 80472506 C T FAH Missense_Mutation p.S334F 0.39 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 15 81212587 81212587 G A KIAA1199 Missense_Mutation p.M650I 0.29 tolerated(0.26) benign(0.002) TCGA-D3-A8GI-06 15 81624961 81624961 G A TMC3 Silent p.F1034F 0.36 TCGA-D3-A8GI-06 15 82431029 82431029 G A EFTUD1 Silent p.A1048A 0.32 TCGA-D3-A8GI-06 15 83795573 83795573 G A TM6SF1 Missense_Mutation p.D259N 0.41 deleterious(0.01) benign(0.29) TCGA-D3-A8GI-06 15 84159546 84159546 C T SH3GL3 Intron 0.39 TCGA-D3-A8GI-06 15 84257428 84257428 C T SH3GL3 Missense_Mutation p.S248F 0.51 deleterious(0) possibly_damaging(0.627) TCGA-D3-A8GI-06 15 84287098 84287098 C T SH3GL3 3'UTR 0.59 TCGA-D3-A8GI-06 15 84566740 84566740 C T ADAMTSL3 Missense_Mutation p.P533L 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 85326329 85326329 C T ZNF592 Silent p.F141F 0.47 TCGA-D3-A8GI-06 15 85438706 85438706 G A SLC28A1 Intron 0.70 TCGA-D3-A8GI-06 15 85478411 85478411 G A SLC28A1 Missense_Mutation p.G457R 0.44 tolerated(0.1) probably_damaging(0.921) TCGA-D3-A8GI-06 15 86076913 86076913 G A AKAP13 Missense_Mutation p.D94N 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 15 86791007 86791007 G A AGBL1 Missense_Mutation p.R165Q 0.44 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GI-06 15 88472452 88472452 G A NTRK3 Silent p.S701S 0.47 TCGA-D3-A8GI-06 15 88678584 88678584 C T NTRK3 Missense_Mutation p.E318K 0.57 deleterious(0.03) benign(0.102) TCGA-D3-A8GI-06 15 89392905 89392905 C T ACAN Missense_Mutation p.P657S 0.59 tolerated(0.39) unknown(0) TCGA-D3-A8GI-06 15 89400116 89400116 T G ACAN Missense_Mutation p.S1434A 0.40 deleterious(0.03) possibly_damaging(0.81) TCGA-D3-A8GI-06 15 89400438 89400438 G T ACAN Missense_Mutation p.G1541V 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 15 89401425 89401425 G A ACAN Missense_Mutation p.G1870E 0.46 deleterious(0) possibly_damaging(0.541) TCGA-D3-A8GI-06 15 89402090 89402090 G A ACAN Missense_Mutation p.E2092K 0.45 tolerated(0.07) benign(0.325) TCGA-D3-A8GI-06 15 89736531 89736531 C T ABHD2 Silent p.T354T 0.23 TCGA-D3-A8GI-06 15 90020358 90020358 G A RHCG Missense_Mutation p.L398F 0.36 deleterious(0) possibly_damaging(0.878) TCGA-D3-A8GI-06 15 90270485 90270485 G A WDR93 Nonsense_Mutation p.W326* 0.30 TCGA-D3-A8GI-06 15 90321545 90321545 C T MESP2 Missense_Mutation p.R392C 0.39 deleterious_low_confidence(0.01) benign(0.27) TCGA-D3-A8GI-06 15 90335402 90335402 C T ANPEP Nonsense_Mutation p.W839* 0.54 TCGA-D3-A8GI-06 15 90342782 90342782 C T ANPEP Missense_Mutation p.D610N 0.30 tolerated(0.57) benign(0.001) TCGA-D3-A8GI-06 15 90771744 90771744 C T SEMA4B Missense_Mutation p.P795S 0.32 tolerated(0.12) benign(0.094) TCGA-D3-A8GI-06 15 91025467 91025467 C T IQGAP1 Missense_Mutation p.S1170L 0.46 tolerated(0.06) benign(0.217) TCGA-D3-A8GI-06 15 91312683 91312683 C T BLM Missense_Mutation p.R808C 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 15 91433672 91433672 C T FES Silent p.I426I 0.41 TCGA-D3-A8GI-06 15 91433699 91433699 C T FES Silent p.F435F 0.38 TCGA-D3-A8GI-06 15 92459285 92459285 C T SLCO3A1 Silent p.I81I 0.53 TCGA-D3-A8GI-06 15 92706100 92706100 G A SLCO3A1 Missense_Mutation p.R623Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 15 93015608 93015608 T G C15orf32 Missense_Mutation p.V77G 0.40 tolerated_low_confidence(0.63) benign(0) TCGA-D3-A8GI-06 15 93043791 93043791 C T C15orf32 3'UTR 0.57 TCGA-D3-A8GI-06 15 94841715 94841715 C T MCTP2 Missense_Mutation p.S74F 0.44 tolerated(0.28) benign(0.009) TCGA-D3-A8GI-06 15 94841929 94841929 C T MCTP2 Silent p.S145S 0.41 TCGA-D3-A8GI-06 15 94858784 94858784 G C MCTP2 Missense_Mutation p.L185F 0.35 tolerated(0.08) benign(0.163) TCGA-D3-A8GI-06 15 94899455 94899455 G A MCTP2 Silent p.G365G 0.36 TCGA-D3-A8GI-06 16 10031866 10031866 G A GRIN2A Silent p.S319S 0.50 TCGA-D3-A8GI-06 16 10032196 10032196 G A GRIN2A Silent p.S209S 0.33 TCGA-D3-A8GI-06 16 10032204 10032204 C T GRIN2A Missense_Mutation p.D207N 0.56 tolerated(0.22) probably_damaging(0.984) TCGA-D3-A8GI-06 16 10032279 10032279 C T GRIN2A Missense_Mutation p.E182K 0.35 tolerated(0.07) benign(0.287) TCGA-D3-A8GI-06 16 10783828 10783828 G A TEKT5 Missense_Mutation p.H207Y 0.25 deleterious(0.05) possibly_damaging(0.838) TCGA-D3-A8GI-06 16 10788551 10788551 G A TEKT5 Silent p.N60N 0.32 TCGA-D3-A8GI-06 16 10855417 10855417 C T NUBP1 Intron 0.23 TCGA-D3-A8GI-06 16 11000490 11000490 G A CIITA Missense_Mutation p.E381K 0.45 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GI-06 16 11979040 11979040 T C GSPT1 Missense_Mutation p.K449E 0.38 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A8GI-06 16 1261221 1261221 C T CACNA1H Missense_Mutation p.S1426L 0.52 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 16 14958980 14958980 C T NOMO1 Missense_Mutation p.T546I 0.34 tolerated(0.34) benign(0.003) TCGA-D3-A8GI-06 16 15221988 15221988 G A RP11-1186N24.5 RNA 0.48 TCGA-D3-A8GI-06 16 15729672 15729672 G A KIAA0430 Silent p.F224F 0.28 TCGA-D3-A8GI-06 16 15811085 15811085 C T MYH11 Missense_Mutation p.G1813R 0.43 benign(0.405) TCGA-D3-A8GI-06 16 15833983 15833983 G A MYH11 Silent p.V981V 0.53 TCGA-D3-A8GI-06 16 1584540 1584540 C T TMEM204 Silent p.S88S 0.33 TCGA-D3-A8GI-06 16 15850324 15850324 G A MYH11 Silent p.F548F 0.57 TCGA-D3-A8GI-06 16 15977974 15977974 G A FOPNL Silent p.D39D 0.54 TCGA-D3-A8GI-06 16 16205243 16205243 C T ABCC1 Silent p.S961S 0.32 TCGA-D3-A8GI-06 16 16259681 16259681 G A ABCC6 Silent p.F1035F 0.32 TCGA-D3-A8GI-06 16 16276294 16276294 C T ABCC6 Missense_Mutation p.G741E 0.57 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 16297360 16297360 G A ABCC6 Missense_Mutation p.A302V 0.25 tolerated(0.24) benign(0.109) TCGA-D3-A8GI-06 16 18532118 18532118 G A NOMO2 Missense_Mutation p.P748S 0.29 tolerated(0.1) possibly_damaging(0.728) TCGA-D3-A8GI-06 16 18584365 18584365 C G RP11-457I16.2 5'Flank 0.55 TCGA-D3-A8GI-06 16 19475271 19475271 C T TMC5 Silent p.F470F 0.30 TCGA-D3-A8GI-06 16 19477480 19477480 C T TMC5 Missense_Mutation p.S521F 0.32 tolerated(0.1) benign(0.022) TCGA-D3-A8GI-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.35 tolerated(0.08) benign(0.009) TCGA-D3-A8GI-06 16 19547791 19547791 C A CCP110 Missense_Mutation p.A267D 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 16 19627451 19627451 G A C16orf62 Missense_Mutation p.A436T 0.55 tolerated(0.5) probably_damaging(0.922) TCGA-D3-A8GI-06 16 20043324 20043324 G A GPR139 Silent p.I265I 0.58 TCGA-D3-A8GI-06 16 20322585 20322585 G A GP2 Missense_Mutation p.P525L 0.53 tolerated(1) benign(0.016) TCGA-D3-A8GI-06 16 20410569 20410569 G A PDILT Silent p.V18V 0.34 TCGA-D3-A8GI-06 16 20471461 20471461 G A ACSM2A Missense_Mutation p.G9R 0.35 tolerated(0.56) benign(0.006) TCGA-D3-A8GI-06 16 20476859 20476859 C T ACSM2A Silent p.S66S 0.28 TCGA-D3-A8GI-06 16 20476860 20476860 C T ACSM2A Missense_Mutation p.P67S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 16 20492155 20492155 G A ACSM2A Missense_Mutation p.G474E 0.40 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 16 20548474 20548474 C T ACSM2B 3'UTR 0.26 TCGA-D3-A8GI-06 16 20548600 20548600 C T ACSM2B Missense_Mutation p.G572R 0.29 tolerated(0.24) benign(0.012) TCGA-D3-A8GI-06 16 20552055 20552055 G A ACSM2B Missense_Mutation p.S517F 0.52 deleterious(0.01) benign(0.154) TCGA-D3-A8GI-06 16 20566706 20566706 C T ACSM2B Missense_Mutation p.D161N 0.31 deleterious(0.03) possibly_damaging(0.788) TCGA-D3-A8GI-06 16 20648080 20648080 C T ACSM1 Missense_Mutation p.S427N 0.53 deleterious(0.05) benign(0.079) TCGA-D3-A8GI-06 16 20673126 20673126 C T ACSM1 Missense_Mutation p.D328N 0.43 tolerated(0.17) benign(0.001) TCGA-D3-A8GI-06 16 20975612 20975612 G A DNAH3 Silent p.P3198P 0.50 TCGA-D3-A8GI-06 16 20996596 20996596 G A DNAH3 Missense_Mutation p.L2490F 0.54 deleterious(0.03) possibly_damaging(0.861) TCGA-D3-A8GI-06 16 20996816 20996816 G A DNAH3 Silent p.I2416I 0.50 TCGA-D3-A8GI-06 16 21049287 21049287 G A DNAH3 Silent p.I1582I 0.48 TCGA-D3-A8GI-06 16 21092965 21092965 G A DNAH3 Silent p.F987F 0.41 TCGA-D3-A8GI-06 16 2110709 2110709 C T TSC2 Silent p.I338I 0.31 TCGA-D3-A8GI-06 16 21123085 21123085 G A DNAH3 Missense_Mutation p.S654F 0.34 tolerated(0.6) benign(0.005) TCGA-D3-A8GI-06 16 21209131 21209131 C T ZP2 Missense_Mutation p.G684E 0.31 tolerated_low_confidence(0.26) benign(0.001) TCGA-D3-A8GI-06 16 2153559 2153559 G A PKD1 Silent p.P2833P 0.53 TCGA-D3-A8GI-06 16 2158922 2158922 G A PKD1 Silent p.A2082A 0.57 TCGA-D3-A8GI-06 16 2159599 2159599 G A PKD1 Missense_Mutation p.P1857S 0.42 benign(0.034) TCGA-D3-A8GI-06 16 2164194 2164194 G A PKD1 Missense_Mutation p.R944C 0.16 probably_damaging(1) TCGA-D3-A8GI-06 16 22145716 22145716 C T VWA3A Missense_Mutation p.S699F 0.32 tolerated(0.29) benign(0.004) TCGA-D3-A8GI-06 16 22269972 22269972 C T EEF2K Missense_Mutation p.S396F 0.28 deleterious(0) possibly_damaging(0.8) TCGA-D3-A8GI-06 16 2287941 2287941 C T DNASE1L2 Silent p.A255A 0.26 TCGA-D3-A8GI-06 16 22926382 22926382 C T HS3ST2 Silent p.I201I 0.37 TCGA-D3-A8GI-06 16 23424818 23424818 G A COG7 Missense_Mutation p.P454S 0.39 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 16 2347779 2347779 G A ABCA3 Silent p.I680I 0.63 TCGA-D3-A8GI-06 16 23692275 23692275 G A PLK1 Silent p.E206E 0.52 TCGA-D3-A8GI-06 16 2436245 2436245 C T ABCA17P RNA 0.49 TCGA-D3-A8GI-06 16 24373293 24373293 A T CACNG3 3'UTR 0.55 TCGA-D3-A8GI-06 16 24373294 24373294 G A CACNG3 3'UTR 0.55 TCGA-D3-A8GI-06 16 2495571 2495571 C T CCNF Missense_Mutation p.P348S 0.41 tolerated(0.13) benign(0.052) TCGA-D3-A8GI-06 16 26147219 26147219 G A HS3ST4 Missense_Mutation p.E341K 0.35 tolerated(0.1) possibly_damaging(0.753) TCGA-D3-A8GI-06 16 28113215 28113215 G A XPO6 Missense_Mutation p.L1000F 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 28331552 28331552 C T SBK1 Silent p.F195F 0.40 TCGA-D3-A8GI-06 16 28331756 28331756 C T SBK1 Silent p.F263F 0.27 TCGA-D3-A8GI-06 16 28509315 28509315 G A APOBR Missense_Mutation p.E985K 0.29 deleterious(0.04) possibly_damaging(0.81) TCGA-D3-A8GI-06 16 28607171 28607171 T G SULT1A2 Silent p.A27A 0.35 TCGA-D3-A8GI-06 16 28618358 28618358 G A SULT1A1 Missense_Mutation p.S138F 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 28619829 28619829 G A SULT1A1 Missense_Mutation p.L82F 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 2871567 2871567 C T PRSS21 Silent p.F302F 0.28 TCGA-D3-A8GI-06 16 2881882 2881882 G A ZG16B Missense_Mutation p.E117K 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 28846433 28846433 C T ATXN2L Missense_Mutation p.H830Y 0.39 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GI-06 16 28913589 28913589 C T ATP2A1 Silent p.L802L 0.57 TCGA-D3-A8GI-06 16 28915509 28915509 G A ATP2A1 Missense_Mutation p.D997N 0.36 tolerated(0.5) benign(0.005) TCGA-D3-A8GI-06 16 28994560 28994560 C T SPNS1 Silent p.I423I 0.28 TCGA-D3-A8GI-06 16 29675710 29675710 C T SPN Missense_Mutation p.P221S 0.30 tolerated(0.82) benign(0.127) TCGA-D3-A8GI-06 16 29855977 29855977 C T MVP Missense_Mutation p.R600C 0.38 tolerated(0.19) probably_damaging(0.998) TCGA-D3-A8GI-06 16 29884672 29884672 C T SEZ6L2 Missense_Mutation p.E793K 0.54 deleterious(0.01) possibly_damaging(0.858) TCGA-D3-A8GI-06 16 30002569 30002569 C T TAOK2 3'Flank 0.52 TCGA-D3-A8GI-06 16 30002574 30002574 C T TAOK2 3'Flank 0.51 TCGA-D3-A8GI-06 16 30006974 30006974 C T HIRIP3 5'UTR 0.52 TCGA-D3-A8GI-06 16 30036690 30036690 C T FAM57B Nonsense_Mutation p.W213* 0.29 TCGA-D3-A8GI-06 16 30036851 30036851 C T FAM57B Intron 0.44 TCGA-D3-A8GI-06 16 30037074 30037074 G C FAM57B Missense_Mutation p.F171L 0.50 deleterious(0.01) possibly_damaging(0.761) TCGA-D3-A8GI-06 16 30516714 30516714 C T ITGAL Missense_Mutation p.P766L 0.49 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GI-06 16 30566712 30566712 G A ZNF764 Missense_Mutation p.P344S 0.36 tolerated(0.14) benign(0.199) TCGA-D3-A8GI-06 16 30680915 30680915 C T FBRS Silent p.P964P 0.44 TCGA-D3-A8GI-06 16 30721323 30721323 C T SRCAP Silent p.L336L 0.59 TCGA-D3-A8GI-06 16 30970467 30970467 C T SETD1A Missense_Mutation p.S69F 0.36 possibly_damaging(0.804) TCGA-D3-A8GI-06 16 30970485 30970485 C T SETD1A Missense_Mutation p.S75F 0.54 benign(0.027) TCGA-D3-A8GI-06 16 31004120 31004120 G A STX1B 3'UTR 0.54 TCGA-D3-A8GI-06 16 31102569 31102569 G A VKORC1 Silent p.F126F 0.34 TCGA-D3-A8GI-06 16 31235542 31235542 G A TRIM72 Silent p.P300P 0.51 TCGA-D3-A8GI-06 16 3139245 3139245 C T ZSCAN10 Silent p.G675G 0.30 TCGA-D3-A8GI-06 16 3140237 3140237 C T ZSCAN10 Missense_Mutation p.D345N 0.38 tolerated(0.08) probably_damaging(0.993) TCGA-D3-A8GI-06 16 31413467 31413467 C T ITGAD Silent p.F153F 0.26 TCGA-D3-A8GI-06 16 31426239 31426239 G C ITGAD Missense_Mutation p.R737T 0.53 deleterious(0) benign(0.359) TCGA-D3-A8GI-06 16 31435246 31435246 G A ITGAD Silent p.L1042L 0.36 TCGA-D3-A8GI-06 16 31476291 31476291 C T ARMC5 Intron 0.36 TCGA-D3-A8GI-06 16 3254339 3254339 C T OR1F1 Silent p.F31F 0.32 TCGA-D3-A8GI-06 16 3299714 3299714 G A MEFV Missense_Mutation p.T326I 0.49 tolerated(0.1) benign(0.012) TCGA-D3-A8GI-06 16 33020703 33020703 G A IGHV3OR16-8 Silent p.L37L 0.31 TCGA-D3-A8GI-06 16 3544601 3544601 C T C16orf90 Missense_Mutation p.G108E 0.42 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-D3-A8GI-06 16 3544602 3544602 C T C16orf90 Missense_Mutation p.G108R 0.42 tolerated_low_confidence(0.15) probably_damaging(0.991) TCGA-D3-A8GI-06 16 3600461 3600461 C T NLRC3 Silent p.K842K 0.40 TCGA-D3-A8GI-06 16 3777695 3777695 G A CREBBP 3'UTR 0.62 TCGA-D3-A8GI-06 16 3779525 3779525 G T CREBBP Silent p.P1841P 0.42 TCGA-D3-A8GI-06 16 3788598 3788598 C T CREBBP Silent p.E1452E 0.55 TCGA-D3-A8GI-06 16 4057453 4057453 G A ADCY9 Silent p.S600S 0.38 TCGA-D3-A8GI-06 16 46766352 46766352 C T MYLK3 Silent p.G410G 0.25 TCGA-D3-A8GI-06 16 46771936 46771936 G A MYLK3 Missense_Mutation p.P230S 0.38 tolerated(0.33) benign(0.015) TCGA-D3-A8GI-06 16 4810549 4810549 C T ZNF500 Missense_Mutation p.G235E 0.52 tolerated(0.15) benign(0.096) TCGA-D3-A8GI-06 16 48121937 48121937 A C ABCC12 Missense_Mutation p.F1179V 0.59 tolerated(0.09) benign(0.015) TCGA-D3-A8GI-06 16 48149360 48149360 C T ABCC12 Missense_Mutation p.G652E 0.47 tolerated(0.08) benign(0.144) TCGA-D3-A8GI-06 16 48175228 48175228 C A ABCC12 Silent p.V104V 0.16 TCGA-D3-A8GI-06 16 48209327 48209327 C T ABCC11 Silent p.G1180G 0.42 TCGA-D3-A8GI-06 16 4933753 4933753 C T PPL Missense_Mutation p.E1635K 0.37 tolerated(0.18) benign(0.154) TCGA-D3-A8GI-06 16 49411639 49411639 C T C16orf78 Intron 0.40 TCGA-D3-A8GI-06 16 49764751 49764751 C T ZNF423 Missense_Mutation p.D70N 0.64 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A8GI-06 16 49764874 49764874 C T ZNF423 Missense_Mutation p.E29K 0.69 tolerated_low_confidence(0.77) benign(0.015) TCGA-D3-A8GI-06 16 50112760 50112760 T C HEATR3 Missense_Mutation p.M291T 0.54 tolerated(0.55) benign(0) TCGA-D3-A8GI-06 16 5040825 5040825 C T SEC14L5 Missense_Mutation p.R135W 0.49 deleterious(0) probably_damaging(0.94) TCGA-D3-A8GI-06 16 50745070 50745070 G A NOD2 Silent p.L416L 0.29 TCGA-D3-A8GI-06 16 50745098 50745098 C T NOD2 Missense_Mutation p.R426C 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 50745863 50745863 C T NOD2 Silent p.L681L 0.41 TCGA-D3-A8GI-06 16 50750828 50750828 G A NOD2 Missense_Mutation p.G858D 0.55 tolerated(0.32) benign(0.005) TCGA-D3-A8GI-06 16 50759440 50759440 C T NOD2 Missense_Mutation p.L975F 0.61 tolerated(0.34) possibly_damaging(0.737) TCGA-D3-A8GI-06 16 5094257 5094257 C T C16orf89 3'UTR 0.65 TCGA-D3-A8GI-06 16 51173517 51173517 C T SALL1 Missense_Mutation p.M872I 0.55 tolerated(0.11) benign(0.04) TCGA-D3-A8GI-06 16 51173534 51173534 C T SALL1 Missense_Mutation p.E867K 0.57 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 16 51174325 51174325 C T SALL1 Missense_Mutation p.R603K 0.48 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 16 51174724 51174724 G A SALL1 Missense_Mutation p.S470F 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 51175859 51175859 C T SALL1 Missense_Mutation p.D92N 0.55 tolerated(0.41) benign(0.001) TCGA-D3-A8GI-06 16 52502463 52502463 C T TOX3 Missense_Mutation p.M37I 0.19 deleterious_low_confidence(0.01) benign(0.38) TCGA-D3-A8GI-06 16 53283882 53283882 C T CHD9 Silent p.L1255L 0.57 TCGA-D3-A8GI-06 16 55363166 55363166 C T IRX6 Missense_Mutation p.P426S 0.55 tolerated(0.48) benign(0.024) TCGA-D3-A8GI-06 16 55855411 55855411 C T CES1 Missense_Mutation p.G188R 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 55905580 55905580 T C CES5A Missense_Mutation p.N154S 0.24 tolerated(0.13) probably_damaging(0.999) TCGA-D3-A8GI-06 16 56435739 56435739 G A AMFR Missense_Mutation p.P331S 0.22 tolerated(0.33) benign(0.007) TCGA-D3-A8GI-06 16 56623859 56623859 G A MT3 Intron 0.50 TCGA-D3-A8GI-06 16 56906328 56906328 C T SLC12A3 Silent p.I306I 0.33 TCGA-D3-A8GI-06 16 56918064 56918064 C T SLC12A3 Silent p.I591I 0.69 TCGA-D3-A8GI-06 16 57060009 57060009 C T NLRC5 Missense_Mutation p.S385L 0.20 tolerated(0.65) benign(0) TCGA-D3-A8GI-06 16 57074581 57074581 C T NLRC5 Missense_Mutation p.L964F 0.28 tolerated(0.37) benign(0.013) TCGA-D3-A8GI-06 16 57242007 57242007 G A RSPRY1 Missense_Mutation p.E130K 0.24 tolerated(0.92) benign(0.403) TCGA-D3-A8GI-06 16 57269072 57269072 C T RSPRY1 Silent p.I522I 0.33 TCGA-D3-A8GI-06 16 57416092 57416092 C T CX3CL1 Silent p.T114T 0.26 TCGA-D3-A8GI-06 16 57500091 57500091 A G POLR2C Silent p.L70L 0.55 TCGA-D3-A8GI-06 16 57719783 57719783 C T GPR97 Silent p.F495F 0.61 TCGA-D3-A8GI-06 16 57918182 57918182 C T CNGB1 Silent p.G1214G 0.61 TCGA-D3-A8GI-06 16 58543222 58543222 A C NDRG4 Missense_Mutation p.E329D 0.28 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 61761118 61761118 C T CDH8 Silent p.R472R 0.20 TCGA-D3-A8GI-06 16 61891040 61891040 G A CDH8 Missense_Mutation p.S217F 0.62 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 64981576 64981576 T C CDH11 Missense_Mutation p.N774S 0.59 tolerated(0.19) benign(0.012) TCGA-D3-A8GI-06 16 64982548 64982548 G A CDH11 Intron 0.36 TCGA-D3-A8GI-06 16 65345409 65345409 C T LINC00922 RNA 0.22 TCGA-D3-A8GI-06 16 66612846 66612846 C T CMTM1 Missense_Mutation p.S268F 0.24 deleterious(0.01) possibly_damaging(0.805) TCGA-D3-A8GI-06 16 66942385 66942385 G A CDH16 Silent p.F800F 0.48 TCGA-D3-A8GI-06 16 66949166 66949166 G A CDH16 Silent p.F180F 0.33 TCGA-D3-A8GI-06 16 66956066 66956066 G A RRAD Silent p.R280R 0.31 TCGA-D3-A8GI-06 16 67221003 67221003 G A EXOC3L1 Missense_Mutation p.A360V 0.66 tolerated(1) benign(0.401) TCGA-D3-A8GI-06 16 67428984 67428984 G A ZDHHC1 Missense_Mutation p.A384V 0.56 tolerated_low_confidence(0.54) benign(0) TCGA-D3-A8GI-06 16 67688241 67688241 C T RLTPR Silent p.A1076A 0.47 TCGA-D3-A8GI-06 16 67692119 67692119 G A ACD Silent p.L412L 0.27 TCGA-D3-A8GI-06 16 67693143 67693143 G A ACD Missense_Mutation p.S247L 0.54 deleterious(0.04) possibly_damaging(0.697) TCGA-D3-A8GI-06 16 67778313 67778313 G A RANBP10 Missense_Mutation p.S149L 0.38 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 16 67973852 67973852 G C LCAT Silent p.P426P 0.61 TCGA-D3-A8GI-06 16 68200808 68200808 C T NFATC3 Missense_Mutation p.T555I 0.61 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 16 68266173 68266173 C T ESRP2 Missense_Mutation p.E325K 0.20 tolerated(0.06) possibly_damaging(0.82) TCGA-D3-A8GI-06 16 68266677 68266677 C T ESRP2 Missense_Mutation p.E233K 0.28 deleterious(0) possibly_damaging(0.786) TCGA-D3-A8GI-06 16 68847257 68847257 C T CDH1 Silent p.I393I 0.57 TCGA-D3-A8GI-06 16 69197016 69197016 C T CIRH1A Missense_Mutation p.P528S 0.55 tolerated(0.48) benign(0.256) TCGA-D3-A8GI-06 16 69317986 69317986 C T SNTB2 Missense_Mutation p.S395F 0.50 tolerated(0.2) benign(0.271) TCGA-D3-A8GI-06 16 69965095 69965095 C T WWP2 Missense_Mutation p.R496W 0.60 deleterious(0) probably_damaging(0.939) TCGA-D3-A8GI-06 16 69988366 69988366 G A CLEC18A Missense_Mutation p.G116S 0.64 tolerated(0.08) benign(0.177) TCGA-D3-A8GI-06 16 70162721 70162721 A G PDPR Silent p.Q132Q 0.27 TCGA-D3-A8GI-06 16 70605663 70605663 C T SF3B3 Missense_Mutation p.P1201S 0.20 tolerated(0.09) benign(0.056) TCGA-D3-A8GI-06 16 70905994 70905994 C T HYDIN Silent p.V3679V 0.21 TCGA-D3-A8GI-06 16 70908353 70908353 G A HYDIN Silent p.S3601S 0.14 TCGA-D3-A8GI-06 16 70928443 70928443 C T HYDIN Missense_Mutation p.G3053R 0.22 probably_damaging(0.991) TCGA-D3-A8GI-06 16 70942654 70942654 C T HYDIN Silent p.R2705R 0.53 TCGA-D3-A8GI-06 16 71004460 71004460 G A HYDIN Missense_Mutation p.S1861F 0.47 probably_damaging(0.983) TCGA-D3-A8GI-06 16 71212863 71212863 C T HYDIN Missense_Mutation p.E117K 0.26 probably_damaging(0.916) TCGA-D3-A8GI-06 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.53 probably_damaging(0.953) TCGA-D3-A8GI-06 16 71318401 71318401 G A CMTR2 Missense_Mutation p.H475Y 0.26 deleterious(0.04) benign(0.001) TCGA-D3-A8GI-06 16 72134461 72134461 C G DHX38 Missense_Mutation p.P415A 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GI-06 16 72164148 72164148 C T PMFBP1 Missense_Mutation p.M582I 0.34 tolerated(0.64) benign(0.002) TCGA-D3-A8GI-06 16 72184726 72184726 C T PMFBP1 Silent p.V139V 0.55 TCGA-D3-A8GI-06 16 72831388 72831388 C T ZFHX3 Silent p.Q1731Q 0.38 TCGA-D3-A8GI-06 16 72845844 72845844 G A ZFHX3 Missense_Mutation p.S1208L 0.54 benign(0.005) TCGA-D3-A8GI-06 16 72993698 72993698 G A ZFHX3 Missense_Mutation p.T116I 0.55 benign(0.03) TCGA-D3-A8GI-06 16 7382981 7382981 G A RBFOX1 5'UTR 0.58 TCGA-D3-A8GI-06 16 74386072 74386072 G A RP11-252A24.2 RNA 0.17 TCGA-D3-A8GI-06 16 74425677 74425677 C T NPIPB15 Missense_Mutation p.P344L 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GI-06 16 74445633 74445633 G A CLEC18B Silent p.I306I 0.12 TCGA-D3-A8GI-06 16 74455149 74455149 G A CLEC18B Missense_Mutation p.S7F 0.15 tolerated_low_confidence(0.11) benign(0.025) TCGA-D3-A8GI-06 16 747111 747111 C T FBXL16 Missense_Mutation p.E99K 0.93 tolerated(0.07) benign(0.233) TCGA-D3-A8GI-06 16 75485691 75485691 G A TMEM170A Silent p.F60F 0.31 TCGA-D3-A8GI-06 16 75637037 75637037 G A ADAT1 Missense_Mutation p.S441L 0.55 tolerated(0.14) benign(0.068) TCGA-D3-A8GI-06 16 75669917 75669917 G A KARS Missense_Mutation p.P216S 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 16 76486406 76486406 G A CNTNAP4 Missense_Mutation p.G285E 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 76495889 76495889 C T CNTNAP4 Missense_Mutation p.S384F 0.47 deleterious(0.04) benign(0.169) TCGA-D3-A8GI-06 16 76495979 76495979 C T CNTNAP4 Missense_Mutation p.S414L 0.36 tolerated(0.08) benign(0.027) TCGA-D3-A8GI-06 16 76501369 76501369 C T CNTNAP4 Missense_Mutation p.S462F 0.13 tolerated(0.07) benign(0.125) TCGA-D3-A8GI-06 16 76528909 76528909 G A CNTNAP4 Missense_Mutation p.G655E 0.45 tolerated(1) benign(0.216) TCGA-D3-A8GI-06 16 76573651 76573651 C T CNTNAP4 Nonsense_Mutation p.Q1013* 0.50 TCGA-D3-A8GI-06 16 76592459 76592459 G A CNTNAP4 Missense_Mutation p.R1196K 0.41 tolerated(0.77) benign(0.002) TCGA-D3-A8GI-06 16 77353935 77353935 C T ADAMTS18 Silent p.E781E 0.55 TCGA-D3-A8GI-06 16 77398123 77398123 C T ADAMTS18 Missense_Mutation p.G312R 0.49 deleterious(0.01) benign(0.356) TCGA-D3-A8GI-06 16 81236239 81236239 C T PKD1L2 Missense_Mutation p.V337M 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 81929479 81929479 C T PLCG2 Silent p.I380I 0.59 TCGA-D3-A8GI-06 16 82033384 82033384 C T SDR42E1 Missense_Mutation p.D172N 0.27 tolerated(0.3) benign(0.003) TCGA-D3-A8GI-06 16 83159059 83159059 T A CDH13 Missense_Mutation p.L193I 0.73 tolerated(0.24) benign(0.018) TCGA-D3-A8GI-06 16 83999123 83999123 C A OSGIN1 Missense_Mutation p.F315L 0.59 deleterious(0) benign(0.302) TCGA-D3-A8GI-06 16 84005678 84005678 C T NECAB2 Intron 0.38 TCGA-D3-A8GI-06 16 84043401 84043401 C T SLC38A8 Nonsense_Mutation p.W432* 0.22 TCGA-D3-A8GI-06 16 84118646 84118646 G A MBTPS1 Missense_Mutation p.L410F 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 84444182 84444182 T A ATP2C2 Silent p.L142L 0.35 TCGA-D3-A8GI-06 16 84459345 84459345 C T ATP2C2 Silent p.L308L 0.56 TCGA-D3-A8GI-06 16 84494308 84494308 G A ATP2C2 Silent p.R794R 0.55 TCGA-D3-A8GI-06 16 87466740 87466740 G A ZCCHC14 Silent p.S117S 0.34 TCGA-D3-A8GI-06 16 88098895 88098895 C T BANP Missense_Mutation p.P434L 0.31 deleterious_low_confidence(0.04) benign(0) TCGA-D3-A8GI-06 16 8866739 8866739 G A ABAT Missense_Mutation p.D307N 0.41 tolerated(0.39) benign(0.019) TCGA-D3-A8GI-06 16 88706491 88706491 C T IL17C 3'UTR 0.69 TCGA-D3-A8GI-06 16 8873365 8873365 G A ABAT Silent p.V433V 0.57 TCGA-D3-A8GI-06 16 89351825 89351825 C T ANKRD11 Silent p.T375T 0.55 TCGA-D3-A8GI-06 16 89703300 89703300 G A DPEP1 Missense_Mutation p.G183E 0.19 tolerated(0.64) benign(0.239) TCGA-D3-A8GI-06 16 8996318 8996318 G A USP7 Nonsense_Mutation p.R621* 0.33 TCGA-D3-A8GI-06 16 9856936 9856936 C T GRIN2A 3'UTR 0.49 TCGA-D3-A8GI-06 16 9857071 9857071 C T GRIN2A Missense_Mutation p.V1444I 0.58 deleterious(0) benign(0.092) TCGA-D3-A8GI-06 16 9857387 9857387 C T GRIN2A Silent p.G1338G 0.33 TCGA-D3-A8GI-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.39 tolerated(0.37) benign(0.005) TCGA-D3-A8GI-06 16 9858276 9858276 C T GRIN2A Missense_Mutation p.R1042K 0.49 tolerated_low_confidence(0.75) benign(0.015) TCGA-D3-A8GI-06 16 9858369 9858369 C A GRIN2A Missense_Mutation p.R1011L 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 16 9858754 9858754 G A GRIN2A Missense_Mutation p.P883S 0.28 deleterious(0.02) benign(0.329) TCGA-D3-A8GI-06 16 9862887 9862887 C T GRIN2A Missense_Mutation p.E806K 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 10222331 10222331 C T MYH13 Missense_Mutation p.E1172K 0.84 deleterious(0.02) benign(0.017) TCGA-D3-A8GI-06 17 10296189 10296189 G A MYH8 Silent p.L1808L 0.83 TCGA-D3-A8GI-06 17 10298647 10298647 G A MYH8 Silent p.L1589L 0.88 TCGA-D3-A8GI-06 17 10322234 10322234 G A MYH8 Silent p.L108L 0.85 TCGA-D3-A8GI-06 17 10399302 10399302 C T MYH1 Missense_Mutation p.D1712N 0.89 deleterious(0.01) possibly_damaging(0.785) TCGA-D3-A8GI-06 17 10535876 10535876 C T MYH3 Missense_Mutation p.E1625K 0.79 deleterious(0.01) benign(0.391) TCGA-D3-A8GI-06 17 11520750 11520750 C T DNAH9 Silent p.I309I 0.91 TCGA-D3-A8GI-06 17 11550485 11550485 G A DNAH9 Silent p.T689T 0.82 TCGA-D3-A8GI-06 17 11772469 11772469 G A DNAH9 Missense_Mutation p.A3318T 0.86 benign(0.141) TCGA-D3-A8GI-06 17 12655844 12655844 G A MYOCD Silent p.P413P 0.68 TCGA-D3-A8GI-06 17 12847441 12847441 C T ARHGAP44 Silent p.I263I 0.76 TCGA-D3-A8GI-06 17 1542118 1542118 C T SCARF1 Missense_Mutation p.R449Q 0.85 tolerated(0.26) benign(0.017) TCGA-D3-A8GI-06 17 1549667 1549667 G A RILP 3'UTR 0.80 TCGA-D3-A8GI-06 17 16612495 16612495 C T CCDC144A Missense_Mutation p.P375L 0.79 tolerated(0.07) benign(0.04) TCGA-D3-A8GI-06 17 16725697 16725697 C T AC022596.6 RNA 0.60 TCGA-D3-A8GI-06 17 18045551 18045551 C T MYO15A Silent p.A1936A 0.75 TCGA-D3-A8GI-06 17 18542496 18542496 C T TBC1D28 Missense_Mutation p.E64K 0.49 deleterious(0.02) benign(0.271) TCGA-D3-A8GI-06 17 18565591 18565591 G A ZNF286B Missense_Mutation p.P410S 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 18635441 18635441 C T TRIM16L Missense_Mutation p.L153F 0.72 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 17 18907132 18907132 C T FAM83G Missense_Mutation p.D75N 0.73 deleterious(0.04) probably_damaging(0.986) TCGA-D3-A8GI-06 17 19015827 19015827 A G SNORD3D RNA 0.46 TCGA-D3-A8GI-06 17 19091451 19091451 T C SNORD3A RNA 0.15 TCGA-D3-A8GI-06 17 19216587 19216587 C T EPN2 Missense_Mutation p.S381L 0.69 tolerated(0.22) benign(0.003) TCGA-D3-A8GI-06 17 19314640 19314640 G A RNF112 5'UTR 0.80 TCGA-D3-A8GI-06 17 20805867 20805867 C T RP11-344E13.3 RNA 0.72 TCGA-D3-A8GI-06 17 2290766 2290766 G A MNT Missense_Mutation p.P393L 0.80 deleterious(0.02) unknown(0) TCGA-D3-A8GI-06 17 26092699 26092699 C T NOS2 Missense_Mutation p.G764S 0.72 tolerated(0.43) benign(0.012) TCGA-D3-A8GI-06 17 26817438 26817438 C T SLC13A2 Silent p.V115V 0.77 TCGA-D3-A8GI-06 17 28544253 28544253 G A SLC6A4 Silent p.A256A 0.81 TCGA-D3-A8GI-06 17 29311655 29311655 C T RNF135 Silent p.I131I 0.77 TCGA-D3-A8GI-06 17 29490300 29490300 C T NF1 Nonsense_Mutation p.Q129* 0.71 TCGA-D3-A8GI-06 17 2995802 2995802 C T OR1D2 Missense_Mutation p.M163I 0.72 tolerated(0.1) benign(0.144) TCGA-D3-A8GI-06 17 30800864 30800864 C T PSMD11 Missense_Mutation p.S230L 0.76 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 17 3118921 3118921 G A OR1A1 Missense_Mutation p.E3K 0.75 tolerated(0.92) benign(0.003) TCGA-D3-A8GI-06 17 3195703 3195703 G A OR3A1 Silent p.L58L 0.87 TCGA-D3-A8GI-06 17 32483062 32483062 G A ASIC2 Silent p.L164L 0.81 TCGA-D3-A8GI-06 17 3324495 3324495 G A OR3A3 Missense_Mutation p.A212T 0.74 tolerated(0.07) benign(0.102) TCGA-D3-A8GI-06 17 33690564 33690564 G A SLFN11 Missense_Mutation p.S88L 0.77 tolerated(0.3) benign(0.015) TCGA-D3-A8GI-06 17 33690742 33690742 C T SLFN11 Missense_Mutation p.E29K 0.81 tolerated(0.53) benign(0.01) TCGA-D3-A8GI-06 17 34072838 34072838 C T GAS2L2 Missense_Mutation p.E560K 0.89 tolerated(0.3) benign(0.001) TCGA-D3-A8GI-06 17 3514069 3514069 G A SHPK Nonsense_Mutation p.Q408* 0.78 TCGA-D3-A8GI-06 17 35538295 35538295 G A ACACA Silent p.I1593I 0.81 TCGA-D3-A8GI-06 17 35549123 35549123 G A ACACA Missense_Mutation p.L1442F 0.82 tolerated(0.49) probably_damaging(0.999) TCGA-D3-A8GI-06 17 35641850 35641850 G A ACACA Silent p.H120H 0.78 TCGA-D3-A8GI-06 17 36352427 36352427 C T RP11-1407O15.2 Missense_Mutation p.D454N 0.23 TCGA-D3-A8GI-06 17 36483922 36483922 C T GPR179 Missense_Mutation p.E1844K 0.85 tolerated(0.23) benign(0.006) TCGA-D3-A8GI-06 17 36708339 36708339 G A SRCIN1 Missense_Mutation p.P837L 0.78 deleterious(0.04) possibly_damaging(0.65) TCGA-D3-A8GI-06 17 36993474 36993474 C T C17orf98 Missense_Mutation p.R76K 0.71 tolerated(0.28) benign(0.273) TCGA-D3-A8GI-06 17 37371462 37371462 G A STAC2 Missense_Mutation p.P203L 0.77 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 37576123 37576123 G A MED1 Missense_Mutation p.L382F 0.77 tolerated(0.16) probably_damaging(0.94) TCGA-D3-A8GI-06 17 37922297 37922297 C T IKZF3 Missense_Mutation p.E426K 0.87 deleterious(0.01) benign(0.212) TCGA-D3-A8GI-06 17 38028683 38028683 C T ZPBP2 Silent p.C189C 0.68 TCGA-D3-A8GI-06 17 38548870 38548870 G A TOP2A Missense_Mutation p.P1311S 0.73 tolerated(0.41) benign(0.015) TCGA-D3-A8GI-06 17 38634835 38634835 C T TNS4 Missense_Mutation p.R659Q 0.83 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 17 38854529 38854529 G A KRT24 Missense_Mutation p.S513L 0.79 deleterious(0) unknown(0) TCGA-D3-A8GI-06 17 39041345 39041345 C T KRT20 Silent p.T31T 0.70 TCGA-D3-A8GI-06 17 39138697 39138697 G A KRT40 Silent p.S183S 0.78 TCGA-D3-A8GI-06 17 39296278 39296278 G A KRTAP4-6 Silent p.C154C 0.38 TCGA-D3-A8GI-06 17 39521144 39521144 G A KRT33B Silent p.I328I 0.66 TCGA-D3-A8GI-06 17 39551735 39551735 C T KRT31 Silent p.V243V 0.90 TCGA-D3-A8GI-06 17 39636887 39636887 G T KRT35 Missense_Mutation p.Q155K 0.76 deleterious(0.02) benign(0.24) TCGA-D3-A8GI-06 17 39636889 39636889 A G KRT35 Missense_Mutation p.L154P 0.76 deleterious(0.01) benign(0.097) TCGA-D3-A8GI-06 17 39661345 39661345 C T KRT13 Missense_Mutation p.S153N 0.83 deleterious(0.02) benign(0.261) TCGA-D3-A8GI-06 17 39673104 39673104 C T KRT15 Missense_Mutation p.G232S 0.74 tolerated(1) benign(0.015) TCGA-D3-A8GI-06 17 39723856 39723856 C T KRT9 Missense_Mutation p.G514E 0.88 tolerated_low_confidence(0.11) unknown(0) TCGA-D3-A8GI-06 17 40094983 40094983 C T TTC25 RNA 0.79 TCGA-D3-A8GI-06 17 40652809 40652809 C T ATP6V0A1 Silent p.I595I 0.83 TCGA-D3-A8GI-06 17 40948219 40948219 G A WNK4 Silent p.Q1170Q 0.90 TCGA-D3-A8GI-06 17 41020229 41020229 C T AOC4P RNA 0.83 TCGA-D3-A8GI-06 17 41738465 41738465 C T MEOX1 Silent p.K146K 0.75 TCGA-D3-A8GI-06 17 42828063 42828063 C T DBF4B Silent p.L430L 0.70 TCGA-D3-A8GI-06 17 43037500 43037500 C T C1QL1 3'UTR 0.85 TCGA-D3-A8GI-06 17 43246196 43246196 G A HEXIM2 Intron 0.83 TCGA-D3-A8GI-06 17 43332664 43332664 G A SPATA32 Silent p.T295T 0.77 TCGA-D3-A8GI-06 17 4352532 4352532 G A SPNS3 Nonsense_Mutation p.W258* 0.72 TCGA-D3-A8GI-06 17 4389813 4389813 G A SPNS3 Missense_Mutation p.G462D 0.76 tolerated(0.13) possibly_damaging(0.764) TCGA-D3-A8GI-06 17 45012595 45012595 T C GOSR2 Intron 0.80 TCGA-D3-A8GI-06 17 4542188 4542188 G A ALOX15 Silent p.L167L 0.79 TCGA-D3-A8GI-06 17 46214599 46214599 C T SKAP1 Silent p.%3D 0.90 TCGA-D3-A8GI-06 17 46674030 46674030 G A HOXB6 Silent p.S140S 0.77 TCGA-D3-A8GI-06 17 48559688 48559688 C T RSAD1 Silent p.F237F 0.80 TCGA-D3-A8GI-06 17 48614269 48614269 G A EPN3 Missense_Mutation p.D118N 0.79 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 17 48695606 48695606 G A CACNA1G Missense_Mutation p.E1777K 0.82 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 17 48697088 48697088 C T CACNA1G Silent p.S1942S 0.92 TCGA-D3-A8GI-06 17 48918236 48918236 C T WFIKKN2 Silent p.I529I 0.85 TCGA-D3-A8GI-06 17 4937014 4937014 G A SLC52A1 Missense_Mutation p.P257L 0.65 tolerated(0.19) benign(0.004) TCGA-D3-A8GI-06 17 49710939 49710939 G A CA10 Missense_Mutation p.P288S 0.72 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 5040948 5040948 C T USP6 Silent p.I276I 0.75 TCGA-D3-A8GI-06 17 53084940 53084940 G A STXBP4 Silent p.K216K 0.75 TCGA-D3-A8GI-06 17 53485110 53485110 G A MMD Missense_Mutation p.P114L 0.71 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GI-06 17 54428127 54428127 G A ANKFN1 Nonsense_Mutation p.W66* 0.75 TCGA-D3-A8GI-06 17 5461802 5461802 G A NLRP1 Silent p.F738F 0.81 TCGA-D3-A8GI-06 17 5461953 5461953 T C NLRP1 Missense_Mutation p.N688S 0.68 tolerated(0.76) benign(0.028) TCGA-D3-A8GI-06 17 56232512 56232512 C T OR4D1 5'UTR 0.80 TCGA-D3-A8GI-06 17 56355194 56355194 G A MPO Silent p.L400L 0.84 TCGA-D3-A8GI-06 17 56598173 56598173 G A SEPT4 Silent p.F451F 0.82 TCGA-D3-A8GI-06 17 57287389 57287389 G A SMG8 5'UTR 0.68 TCGA-D3-A8GI-06 17 57738922 57738922 A T CLTC Missense_Mutation p.K429I 0.72 deleterious(0) possibly_damaging(0.849) TCGA-D3-A8GI-06 17 58258816 58258816 G A USP32 Missense_Mutation p.L1473F 0.86 tolerated_low_confidence(0.7) benign(0.006) TCGA-D3-A8GI-06 17 58282914 58282914 G A USP32 Missense_Mutation p.P1048L 0.67 deleterious(0.02) benign(0.271) TCGA-D3-A8GI-06 17 58543816 58543816 G A APPBP2 Missense_Mutation p.L170F 0.86 deleterious(0.01) probably_damaging(0.941) TCGA-D3-A8GI-06 17 58946031 58946031 C T BCAS3 Missense_Mutation p.H191Y 0.89 tolerated(0.07) benign(0.004) TCGA-D3-A8GI-06 17 60814309 60814309 G A MARCH10 Missense_Mutation p.S307L 0.76 tolerated(0.19) benign(0.004) TCGA-D3-A8GI-06 17 62019204 62019204 G A SCN4A Missense_Mutation p.P1480S 0.86 deleterious(0) benign(0.314) TCGA-D3-A8GI-06 17 62893120 62893120 G A LRRC37A3 Missense_Mutation p.H86Y 0.27 tolerated(1) benign(0) TCGA-D3-A8GI-06 17 6337275 6337275 C T AIPL1 Silent p.R80R 0.75 TCGA-D3-A8GI-06 17 63554520 63554520 G A AXIN2 Silent p.S73S 0.76 TCGA-D3-A8GI-06 17 65124809 65124809 C T HELZ Silent p.Q1115Q 0.78 TCGA-D3-A8GI-06 17 65163815 65163815 G A HELZ Missense_Mutation p.R510C 0.80 deleterious(0.05) benign(0.188) TCGA-D3-A8GI-06 17 65683204 65683204 G A PITPNC1 Intron 0.86 TCGA-D3-A8GI-06 17 6661466 6661466 C T XAF1 Silent p.L31L 0.70 TCGA-D3-A8GI-06 17 66920996 66920996 G A ABCA8 Nonsense_Mutation p.R430* 0.82 TCGA-D3-A8GI-06 17 66933127 66933127 C T ABCA8 Missense_Mutation p.G144E 0.70 tolerated(0.24) benign(0.016) TCGA-D3-A8GI-06 17 6703366 6703366 G A TEKT1 Missense_Mutation p.R413C 0.76 tolerated_low_confidence(0.18) benign(0.001) TCGA-D3-A8GI-06 17 68171249 68171249 C T KCNJ2 Silent p.T23T 0.78 TCGA-D3-A8GI-06 17 6930377 6930377 C T BCL6B Missense_Mutation p.R432C 0.73 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 6978786 6978786 C T CLEC10A Splice_Site p.X226_splice 0.78 TCGA-D3-A8GI-06 17 71166112 71166112 G A SSTR2 Silent p.L218L 0.82 TCGA-D3-A8GI-06 17 72470713 72470713 C T CD300A Missense_Mutation p.T141I 0.87 tolerated(0.11) benign(0.003) TCGA-D3-A8GI-06 17 72588653 72588653 G A C17orf77 Silent p.E156E 0.78 TCGA-D3-A8GI-06 17 72850980 72850980 G A GRIN2C Silent p.L84L 0.88 TCGA-D3-A8GI-06 17 72929639 72929639 G A OTOP2 Silent p.%3D 0.62 TCGA-D3-A8GI-06 17 72943249 72943249 C T OTOP3 Silent p.S433S 0.66 TCGA-D3-A8GI-06 17 7324601 7324601 T G SPEM1 Missense_Mutation p.Y203D 0.82 deleterious(0) possibly_damaging(0.566) TCGA-D3-A8GI-06 17 73559162 73559162 G A LLGL2 Missense_Mutation p.R199Q 0.82 tolerated(0.75) benign(0.004) TCGA-D3-A8GI-06 17 73725353 73725353 G A ITGB4 Missense_Mutation p.E192K 0.67 tolerated(0.13) probably_damaging(0.999) TCGA-D3-A8GI-06 17 73910305 73910305 G A FBF1 Silent p.A948A 0.90 TCGA-D3-A8GI-06 17 73922400 73922400 G A FBF1 Missense_Mutation p.P221S 0.80 tolerated(0.06) probably_damaging(0.981) TCGA-D3-A8GI-06 17 74003940 74003940 C T EVPL Silent p.G1782G 0.71 TCGA-D3-A8GI-06 17 74154497 74154497 G A RNF157 Missense_Mutation p.P464S 0.83 tolerated_low_confidence(0.35) benign(0.002) TCGA-D3-A8GI-06 17 74383151 74383151 C T SPHK1 Silent p.L299L 0.87 TCGA-D3-A8GI-06 17 74387137 74387137 A T UBE2O Missense_Mutation p.F1256I 0.83 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-D3-A8GI-06 17 7559154 7559154 G A ATP1B2 Missense_Mutation p.D272N 0.82 tolerated(0.08) benign(0.222) TCGA-D3-A8GI-06 17 76449483 76449483 C T DNAH17 Missense_Mutation p.E3477K 0.90 probably_damaging(0.988) TCGA-D3-A8GI-06 17 7646526 7646526 C T DNAH2 Intron 0.55 TCGA-D3-A8GI-06 17 76482202 76482202 C T DNAH17 Missense_Mutation p.R2358Q 0.68 possibly_damaging(0.804) TCGA-D3-A8GI-06 17 76497412 76497412 C T DNAH17 Silent p.Q1765Q 0.82 TCGA-D3-A8GI-06 17 76497759 76497759 T A DNAH17-AS1 3'UTR 0.79 TCGA-D3-A8GI-06 17 76502804 76502804 C T DNAH17 Missense_Mutation p.E1597K 0.79 benign(0.002) TCGA-D3-A8GI-06 17 76803489 76803489 G A USP36 Missense_Mutation p.S546F 0.65 deleterious(0) possibly_damaging(0.807) TCGA-D3-A8GI-06 17 7696384 7696384 G A DNAH2 Missense_Mutation p.S2477N 0.87 benign(0.01) TCGA-D3-A8GI-06 17 7721304 7721304 G A DNAH2 Missense_Mutation p.R3426Q 0.79 benign(0.028) TCGA-D3-A8GI-06 17 7727619 7727619 C T DNAH2 Nonsense_Mutation p.Q3887* 0.88 TCGA-D3-A8GI-06 17 78165212 78165212 G A CARD14 Missense_Mutation p.D394N 0.80 tolerated(0.11) benign(0.02) TCGA-D3-A8GI-06 17 79090091 79090091 C T BAIAP2 Silent p.L549L 0.85 TCGA-D3-A8GI-06 17 7909963 7909963 C T GUCY2D Missense_Mutation p.P437S 0.91 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 17 7916489 7916489 G A GUCY2D Missense_Mutation p.D728N 0.89 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 17 79226882 79226882 G A SLC38A10 Missense_Mutation p.P483S 0.84 deleterious(0) benign(0.21) TCGA-D3-A8GI-06 17 80319909 80319909 C T TEX19 5'UTR 0.70 TCGA-D3-A8GI-06 17 8050868 8050868 G A PER1 Missense_Mutation p.P473S 0.73 tolerated(0.25) benign(0.416) TCGA-D3-A8GI-06 17 8166269 8166269 C T PFAS Silent p.V456V 0.83 TCGA-D3-A8GI-06 17 8169659 8169659 C T PFAS Missense_Mutation p.P937S 0.85 tolerated(0.88) benign(0.001) TCGA-D3-A8GI-06 17 8218264 8218264 G A ARHGEF15 Missense_Mutation p.E344K 1.00 tolerated(0.17) benign(0.4) TCGA-D3-A8GI-06 17 8702217 8702217 C T MFSD6L Silent p.R74R 0.89 TCGA-D3-A8GI-06 17 8814784 8814784 C T PIK3R5 Missense_Mutation p.E10K 0.68 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 17 9490097 9490097 C T WDR16 Missense_Mutation p.A118V 0.83 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 17 9729473 9729473 C T GLP2R Silent p.P31P 1.00 TCGA-D3-A8GI-06 18 11886763 11886763 G A MPPE1 Silent p.S231S 0.64 TCGA-D3-A8GI-06 18 14478324 14478324 G A CXADRP3 RNA 0.83 TCGA-D3-A8GI-06 18 14479164 14479164 C T CXADRP3 RNA 0.71 TCGA-D3-A8GI-06 18 14542697 14542697 C T POTEC Missense_Mutation p.G150D 0.69 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 18 14542966 14542966 C T POTEC Silent p.K60K 0.23 TCGA-D3-A8GI-06 18 14851512 14851512 C T ANKRD30B Missense_Mutation p.S1071F 0.67 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GI-06 18 19996671 19996671 C T CTAGE1 Silent p.R368R 0.78 TCGA-D3-A8GI-06 18 19997229 19997229 C T CTAGE1 Nonsense_Mutation p.W182* 0.77 TCGA-D3-A8GI-06 18 21010599 21010599 G A TMEM241 Nonsense_Mutation p.Q39* 0.77 TCGA-D3-A8GI-06 18 24722858 24722858 C T CHST9 5'UTR 0.77 TCGA-D3-A8GI-06 18 25531962 25531962 C T CDH2 3'UTR 0.75 TCGA-D3-A8GI-06 18 28598156 28598156 C T DSC3 Missense_Mutation p.D382N 0.78 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GI-06 18 28648138 28648138 G A DSC2 Missense_Mutation p.A850V 0.77 tolerated(0.07) benign(0.202) TCGA-D3-A8GI-06 18 28662242 28662242 C T DSC2 Missense_Mutation p.D409N 0.72 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GI-06 18 28725741 28725741 C T DSC1 Splice_Site p.X258_splice 0.73 TCGA-D3-A8GI-06 18 28909955 28909955 C T DSG1 Missense_Mutation p.S158L 0.73 deleterious(0.01) benign(0.101) TCGA-D3-A8GI-06 18 28913584 28913584 C T DSG1 Silent p.G239G 0.87 TCGA-D3-A8GI-06 18 28916344 28916344 C T DSG1 Silent p.L345L 0.76 TCGA-D3-A8GI-06 18 28923721 28923721 G A DSG1 Intron 0.90 TCGA-D3-A8GI-06 18 28923768 28923768 C T DSG1 Intron 0.80 TCGA-D3-A8GI-06 18 28935276 28935276 C T DSG1 Silent p.I1039I 0.62 TCGA-D3-A8GI-06 18 29049278 29049278 C T DSG3 Silent p.I621I 0.76 TCGA-D3-A8GI-06 18 29052688 29052688 G A DSG3 Missense_Mutation p.E680K 0.62 deleterious(0.04) possibly_damaging(0.493) TCGA-D3-A8GI-06 18 29056171 29056171 G A DSG3 Missense_Mutation p.R983Q 0.77 tolerated(0.59) benign(0.005) TCGA-D3-A8GI-06 18 29125753 29125753 G A DSG2 Missense_Mutation p.E802K 0.77 tolerated(0.06) probably_damaging(0.981) TCGA-D3-A8GI-06 18 29797044 29797044 G A MEP1B Missense_Mutation p.G617D 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 18 30092721 30092721 G A WBP11P1 RNA 0.84 TCGA-D3-A8GI-06 18 30267158 30267158 G A KLHL14 Nonsense_Mutation p.R400* 0.83 TCGA-D3-A8GI-06 18 30275460 30275460 G A KLHL14 Silent p.F375F 0.91 TCGA-D3-A8GI-06 18 30847210 30847210 G A CCDC178 Missense_Mutation p.H410Y 0.84 tolerated(1) benign(0) TCGA-D3-A8GI-06 18 30950124 30950124 G A CCDC178 Missense_Mutation p.P80S 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 18 30950125 30950125 G A CCDC178 Silent p.Y79Y 0.61 TCGA-D3-A8GI-06 18 3134759 3134759 G A MYOM1 Missense_Mutation p.S758L 0.77 deleterious(0) possibly_damaging(0.531) TCGA-D3-A8GI-06 18 31599533 31599533 C T NOL4 Missense_Mutation p.E269K 0.71 tolerated(0.65) probably_damaging(0.996) TCGA-D3-A8GI-06 18 32446109 32446109 C A DTNA Intron 0.73 TCGA-D3-A8GI-06 18 33840125 33840125 C T MOCOS Missense_Mutation p.S799F 0.76 deleterious(0.04) benign(0.072) TCGA-D3-A8GI-06 18 3597274 3597274 G A DLGAP1 Intron 0.88 TCGA-D3-A8GI-06 18 42531858 42531858 C T SETBP1 Silent p.I851I 0.65 TCGA-D3-A8GI-06 18 43224062 43224062 C T SLC14A2 Missense_Mutation p.P430S 0.76 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A8GI-06 18 43604582 43604582 C T PSTPIP2 Missense_Mutation p.E69K 0.74 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 18 44013385 44013385 C T RNF165 Silent p.F98F 0.83 TCGA-D3-A8GI-06 18 44336456 44336456 G A ST8SIA5 Missense_Mutation p.P6S 0.77 possibly_damaging(0.637) TCGA-D3-A8GI-06 18 44560468 44560468 C T TCEB3B Missense_Mutation p.D390N 0.74 deleterious(0) benign(0.001) TCGA-D3-A8GI-06 18 44560568 44560568 C T TCEB3B Silent p.L356L 0.72 TCGA-D3-A8GI-06 18 44601696 44601696 G A KATNAL2 Missense_Mutation p.D281N 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 18 45566995 45566995 C T ZBTB7C Missense_Mutation p.E162K 0.83 tolerated(0.37) benign(0.014) TCGA-D3-A8GI-06 18 47421332 47421332 C T MYO5B Silent p.R1008R 0.80 TCGA-D3-A8GI-06 18 47778002 47778002 C T CCDC11 Missense_Mutation p.R209Q 0.75 deleterious(0.02) benign(0.319) TCGA-D3-A8GI-06 18 51053047 51053047 G A DCC Missense_Mutation p.R1391K 0.83 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 18 51888088 51888088 C T C18orf54 Missense_Mutation p.S120F 0.70 tolerated(0.17) probably_damaging(0.983) TCGA-D3-A8GI-06 18 51888089 51888089 C T C18orf54 Silent p.S120S 0.70 TCGA-D3-A8GI-06 18 52596037 52596037 C T CCDC68 Missense_Mutation p.G226E 0.72 deleterious(0.05) benign(0.03) TCGA-D3-A8GI-06 18 54270188 54270188 G T TXNL1 3'UTR 0.77 TCGA-D3-A8GI-06 18 54814814 54814814 C T BOD1L2 Missense_Mutation p.P91S 0.87 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A8GI-06 18 55317685 55317685 T G ATP8B1 Missense_Mutation p.I1149L 0.73 tolerated(0.23) benign(0.035) TCGA-D3-A8GI-06 18 56246054 56246054 G A ALPK2 Missense_Mutation p.P652S 0.84 tolerated(0.13) benign(0.048) TCGA-D3-A8GI-06 18 56586602 56586602 C T ZNF532 Silent p.V361V 0.84 TCGA-D3-A8GI-06 18 580595 580595 G A CETN1 Missense_Mutation p.E63K 0.76 deleterious(0) probably_damaging(0.932) TCGA-D3-A8GI-06 18 580773 580773 C T CETN1 Missense_Mutation p.S122L 0.75 deleterious(0.02) possibly_damaging(0.822) TCGA-D3-A8GI-06 18 59221485 59221485 G A CDH20 Missense_Mutation p.E655K 0.87 tolerated(0.59) benign(0.302) TCGA-D3-A8GI-06 18 59878388 59878388 C T KIAA1468 Nonsense_Mutation p.R177* 0.84 TCGA-D3-A8GI-06 18 60241885 60241885 C T ZCCHC2 Silent p.F857F 0.71 TCGA-D3-A8GI-06 18 61305175 61305175 C T SERPINB4 Missense_Mutation p.M317I 0.74 tolerated(0.2) benign(0.271) TCGA-D3-A8GI-06 18 61309074 61309074 C T SERPINB4 Missense_Mutation p.E91K 0.81 tolerated(0.08) benign(0.172) TCGA-D3-A8GI-06 18 61324104 61324104 C T SERPINB3 Missense_Mutation p.M243I 0.78 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 18 61449751 61449751 G A SERPINB7 Missense_Mutation p.D49N 0.72 tolerated(1) benign(0.198) TCGA-D3-A8GI-06 18 61584749 61584749 G A SERPINB10 Silent p.R76R 0.54 TCGA-D3-A8GI-06 18 61602367 61602367 G A SERPINB10 Missense_Mutation p.R362Q 0.78 deleterious(0.03) possibly_damaging(0.886) TCGA-D3-A8GI-06 18 6311589 6311589 C T L3MBTL4 Missense_Mutation p.M12I 0.76 tolerated(0.32) benign(0.002) TCGA-D3-A8GI-06 18 63547825 63547825 G A CDH7 Missense_Mutation p.D685N 0.81 tolerated(0.09) probably_damaging(0.981) TCGA-D3-A8GI-06 18 66564563 66564563 G A CCDC102B Silent p.V387V 0.77 TCGA-D3-A8GI-06 18 7023296 7023296 G A LAMA1 Silent p.D856D 0.79 TCGA-D3-A8GI-06 18 70417848 70417848 C T NETO1 Silent p.R330R 0.82 TCGA-D3-A8GI-06 18 7080017 7080017 C T LAMA1 Missense_Mutation p.G101E 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 18 72999584 72999584 C T TSHZ1 Missense_Mutation p.S696F 0.83 deleterious(0) benign(0.323) TCGA-D3-A8GI-06 18 74090855 74090855 G A ZNF516 Missense_Mutation p.L1072F 0.83 tolerated(0.07) probably_damaging(0.997) TCGA-D3-A8GI-06 18 76757125 76757125 G A SALL3 Missense_Mutation p.G1236S 0.79 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GI-06 18 77624160 77624160 G A KCNG2 Missense_Mutation p.D165N 0.81 deleterious(0.01) possibly_damaging(0.717) TCGA-D3-A8GI-06 18 8784451 8784451 C T SOGA2 Silent p.A447A 0.87 TCGA-D3-A8GI-06 18 8793007 8793007 C T SOGA2 Silent p.P633P 0.79 TCGA-D3-A8GI-06 18 8826071 8826071 C T SOGA2 Silent p.P1521P 0.88 TCGA-D3-A8GI-06 19 1008647 1008647 G A GRIN3B Missense_Mutation p.G833S 0.73 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 10132509 10132509 C T RDH8 3'UTR 0.56 TCGA-D3-A8GI-06 19 10169275 10169275 C T C3P1 RNA 0.33 TCGA-D3-A8GI-06 19 10254461 10254461 G A DNMT1 Missense_Mutation p.R1033W 0.35 deleterious(0.01) possibly_damaging(0.761) TCGA-D3-A8GI-06 19 1047568 1047568 C T ABCA7 Silent p.F728F 0.85 TCGA-D3-A8GI-06 19 1058700 1058700 C T ABCA7 Missense_Mutation p.L1745F 0.90 tolerated(1) benign(0.094) TCGA-D3-A8GI-06 19 10668345 10668345 G A KRI1 Silent p.F506F 0.51 TCGA-D3-A8GI-06 19 10753728 10753728 C T SLC44A2 Intron 0.64 TCGA-D3-A8GI-06 19 11215925 11215925 C T LDLR Missense_Mutation p.R115C 0.40 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 19 11332524 11332524 G A DOCK6 Intron 0.43 TCGA-D3-A8GI-06 19 11565684 11565684 G A ELAVL3 Missense_Mutation p.S254L 0.46 tolerated(0.26) benign(0.001) TCGA-D3-A8GI-06 19 11598681 11598681 G A ZNF653 Silent p.S199S 0.50 TCGA-D3-A8GI-06 19 11759217 11759217 G A ZNF833P RNA 0.44 TCGA-D3-A8GI-06 19 11890982 11890982 C T ZNF441 Missense_Mutation p.R115C 0.41 deleterious(0.02) possibly_damaging(0.793) TCGA-D3-A8GI-06 19 11892026 11892026 C T ZNF441 Nonsense_Mutation p.R463* 0.47 TCGA-D3-A8GI-06 19 11918047 11918047 C T ZNF491 Nonsense_Mutation p.R427* 0.43 TCGA-D3-A8GI-06 19 12155513 12155513 C T ZNF878 Missense_Mutation p.A235T 0.38 tolerated(0.07) possibly_damaging(0.867) TCGA-D3-A8GI-06 19 1218473 1218480 GTTATACA - STK11 Frame_Shift_Del p.L117Rfs*43 0.74 TCGA-D3-A8GI-06 19 12461440 12461440 G A ZNF442 Missense_Mutation p.P320L 0.42 tolerated(0.07) probably_damaging(1) TCGA-D3-A8GI-06 19 12542232 12542232 G A ZNF443 Missense_Mutation p.P252S 0.39 deleterious(0.04) benign(0.319) TCGA-D3-A8GI-06 19 12575854 12575854 G A ZNF709 Silent p.S294S 0.51 TCGA-D3-A8GI-06 19 12575855 12575855 G A ZNF709 Missense_Mutation p.S294F 0.52 tolerated(0.38) probably_damaging(0.998) TCGA-D3-A8GI-06 19 12691841 12691841 G A ZNF490 Nonsense_Mutation p.R350* 0.38 TCGA-D3-A8GI-06 19 12865801 12865801 G A BEST2 Missense_Mutation p.E198K 0.37 deleterious(0) probably_damaging(0.913) TCGA-D3-A8GI-06 19 13007044 13007044 C T GCDH Silent p.L221L 0.48 TCGA-D3-A8GI-06 19 13035018 13035018 G A FARSA Silent p.P445P 0.39 TCGA-D3-A8GI-06 19 13035019 13035019 G A FARSA Missense_Mutation p.P445L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 13366056 13366056 G A CACNA1A Silent p.F1536F 0.44 TCGA-D3-A8GI-06 19 13397606 13397606 G A CACNA1A Silent p.A1088A 0.52 TCGA-D3-A8GI-06 19 13414643 13414643 C T CACNA1A Missense_Mutation p.G681E 0.37 probably_damaging(0.998) TCGA-D3-A8GI-06 19 13445189 13445189 C T CACNA1A Intron 0.45 TCGA-D3-A8GI-06 19 13865134 13865134 C T CCDC130 Missense_Mutation p.P12L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 14038072 14038072 C T CC2D1A Silent p.I770I 0.34 TCGA-D3-A8GI-06 19 14139080 14139080 G A RLN3 Missense_Mutation p.G22R 0.38 tolerated(0.62) benign(0.004) TCGA-D3-A8GI-06 19 14157258 14157258 C T IL27RA Silent p.P323P 0.34 TCGA-D3-A8GI-06 19 15052466 15052466 C T OR7C2 Missense_Mutation p.H56Y 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 15067416 15067416 G A SLC1A6 Silent p.I347I 0.41 TCGA-D3-A8GI-06 19 15308376 15308376 C T NOTCH3 Silent p.L44L 0.29 TCGA-D3-A8GI-06 19 15636237 15636237 C T CYP4F22 Silent p.F30F 0.45 TCGA-D3-A8GI-06 19 15763432 15763432 C T CYP4F3 Silent p.T324T 0.37 TCGA-D3-A8GI-06 19 15791209 15791209 G A CYP4F12 Silent p.G135G 0.47 TCGA-D3-A8GI-06 19 15852812 15852812 G A OR10H3 Missense_Mutation p.V204M 0.35 tolerated(0.06) benign(0.213) TCGA-D3-A8GI-06 19 15905170 15905170 C A OR10H5 Silent p.S104S 0.44 TCGA-D3-A8GI-06 19 15917960 15917960 C T OR10H1 Silent p.K296K 0.42 TCGA-D3-A8GI-06 19 15918665 15918665 G A OR10H1 Silent p.L61L 0.56 TCGA-D3-A8GI-06 19 15918676 15918676 G C OR10H1 Missense_Mutation p.P58A 0.35 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 19 16025445 16025445 G A CYP4F11 Silent p.I427I 0.44 TCGA-D3-A8GI-06 19 16040355 16040355 G A CYP4F11 Silent p.P85P 0.42 TCGA-D3-A8GI-06 19 16040356 16040356 G A CYP4F11 Missense_Mutation p.P85L 0.43 tolerated(0.09) benign(0.078) TCGA-D3-A8GI-06 19 16060411 16060411 C T OR10H4 Silent p.I198I 0.45 TCGA-D3-A8GI-06 19 16513280 16513280 G A EPS15L1 Missense_Mutation p.S548F 0.55 tolerated(0.07) probably_damaging(0.944) TCGA-D3-A8GI-06 19 16617533 16617533 C T C19orf44 Missense_Mutation p.S366L 0.35 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 19 16770964 16770964 C T SMIM7 5'UTR 0.70 TCGA-D3-A8GI-06 19 16860051 16860051 C T NWD1 Missense_Mutation p.L200F 0.43 tolerated(0.11) probably_damaging(0.964) TCGA-D3-A8GI-06 19 16974544 16974544 C T SIN3B Silent p.F472F 0.51 TCGA-D3-A8GI-06 19 17000412 17000412 C T F2RL3 Silent p.P46P 0.38 TCGA-D3-A8GI-06 19 17000413 17000413 C T F2RL3 Missense_Mutation p.R47C 0.38 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 19 17062869 17062869 G A CPAMD8 Silent p.F853F 0.47 TCGA-D3-A8GI-06 19 17170886 17170886 G A HAUS8 Silent p.V82V 0.34 TCGA-D3-A8GI-06 19 17213343 17213343 C T MYO9B Silent p.I272I 0.55 TCGA-D3-A8GI-06 19 17691685 17691685 C T COLGALT1 Silent p.F524F 0.45 TCGA-D3-A8GI-06 19 17758293 17758293 C T UNC13A Missense_Mutation p.E609K 0.51 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 19 17885264 17885264 G A FCHO1 Silent p.R299R 0.44 TCGA-D3-A8GI-06 19 1796878 1796878 C T ATP8B3 Missense_Mutation p.E529K 0.71 tolerated(0.85) benign(0.034) TCGA-D3-A8GI-06 19 17972916 17972916 C T RPL18A Missense_Mutation p.S71F 0.34 tolerated(0.13) benign(0.02) TCGA-D3-A8GI-06 19 17972917 17972917 C T RPL18A Silent p.S71S 0.33 TCGA-D3-A8GI-06 19 17985507 17985507 C T SLC5A5 Silent p.S170S 0.45 TCGA-D3-A8GI-06 19 17994520 17994520 G A SLC5A5 Missense_Mutation p.G425S 0.34 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 19 17994555 17994555 C T SLC5A5 Silent p.F436F 0.39 TCGA-D3-A8GI-06 19 18084890 18084890 G A KCNN1 Missense_Mutation p.D65N 0.45 tolerated(0.26) benign(0.07) TCGA-D3-A8GI-06 19 18084949 18084949 G A KCNN1 Silent p.G84G 0.34 TCGA-D3-A8GI-06 19 18084997 18084997 C T KCNN1 Silent p.F100F 0.33 TCGA-D3-A8GI-06 19 18179300 18179300 C T IL12RB1 Missense_Mutation p.G409E 0.32 tolerated(0.91) benign(0.003) TCGA-D3-A8GI-06 19 18180456 18180456 C T IL12RB1 Silent p.Q363Q 0.43 TCGA-D3-A8GI-06 19 18182980 18182980 C T IL12RB1 Silent p.S321S 0.42 TCGA-D3-A8GI-06 19 18197589 18197589 G A IL12RB1 Silent p.F15F 0.29 TCGA-D3-A8GI-06 19 18241465 18241465 C T MAST3 Missense_Mutation p.S433F 0.28 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 19 18257826 18257826 C T MAST3 Missense_Mutation p.R1071W 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 1828261 1828261 G A REXO1 Missense_Mutation p.P176L 0.90 tolerated(0.2) benign(0.003) TCGA-D3-A8GI-06 19 18321666 18321666 C T PDE4C 3'UTR 0.56 TCGA-D3-A8GI-06 19 18541719 18541719 C T SSBP4 Silent p.S116S 0.24 TCGA-D3-A8GI-06 19 18778567 18778567 C T KLHL26 Silent p.F120F 0.43 TCGA-D3-A8GI-06 19 18898318 18898318 C T COMP Missense_Mutation p.D373N 0.46 tolerated(0.44) benign(0.303) TCGA-D3-A8GI-06 19 19334858 19334858 G A NCAN Silent p.R168R 0.35 TCGA-D3-A8GI-06 19 19337408 19337408 G C NCAN Missense_Mutation p.E396Q 0.35 tolerated(0.07) benign(0.01) TCGA-D3-A8GI-06 19 19344696 19344696 G A NCAN Missense_Mutation p.G1040R 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 19349065 19349065 C T NCAN Missense_Mutation p.T1085I 0.36 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 19 20003015 20003015 C T ZNF253 Missense_Mutation p.S320F 0.42 deleterious(0) benign(0.044) TCGA-D3-A8GI-06 19 20044811 20044811 C T ZNF93 Silent p.A349A 0.36 TCGA-D3-A8GI-06 19 20133818 20133818 G A ZNF682 Missense_Mutation p.P74L 0.38 tolerated(0.16) benign(0.142) TCGA-D3-A8GI-06 19 20236092 20236092 G A CTC-260E6.2 RNA 0.58 TCGA-D3-A8GI-06 19 20807764 20807764 G A ZNF626 Missense_Mutation p.H307Y 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-D3-A8GI-06 19 2117227 2117227 G A AP3D1 Missense_Mutation p.P618L 0.76 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A8GI-06 19 2117228 2117228 G A AP3D1 Missense_Mutation p.P618S 0.77 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 19 21300433 21300433 T C ZNF714 Silent p.F321F 0.47 TCGA-D3-A8GI-06 19 21990526 21990526 G A ZNF43 Silent p.F771F 0.36 TCGA-D3-A8GI-06 19 22156603 22156603 G A ZNF208 Silent p.I411I 0.31 TCGA-D3-A8GI-06 19 22157509 22157509 C T ZNF208 Silent p.E109E 0.44 TCGA-D3-A8GI-06 19 22363724 22363724 G A ZNF676 Silent p.V265V 0.38 TCGA-D3-A8GI-06 19 22379685 22379685 C T ZNF676 5'UTR 0.30 TCGA-D3-A8GI-06 19 22847462 22847462 C T ZNF492 Missense_Mutation p.H331Y 0.38 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A8GI-06 19 22939100 22939100 C T ZNF99 3'Flank 0.45 TCGA-D3-A8GI-06 19 22941781 22941781 C T ZNF99 Silent p.E310E 0.41 TCGA-D3-A8GI-06 19 23159670 23159670 A T ZNF728 Missense_Mutation p.C157S 0.34 tolerated(0.11) benign(0.115) TCGA-D3-A8GI-06 19 23542635 23542635 G A ZNF91 Missense_Mutation p.P1049L 0.53 deleterious(0.05) probably_damaging(0.977) TCGA-D3-A8GI-06 19 23543155 23543155 G A ZNF91 Missense_Mutation p.H876Y 0.40 deleterious(0.03) benign(0.027) TCGA-D3-A8GI-06 19 23545108 23545108 G A ZNF91 Missense_Mutation p.L225F 0.37 deleterious(0.04) benign(0.001) TCGA-D3-A8GI-06 19 24102763 24102763 C T ZNF726 Intron 0.50 TCGA-D3-A8GI-06 19 287575 287575 G A PPAP2C Silent p.F148F 0.81 TCGA-D3-A8GI-06 19 2989139 2989139 C T TLE6 Missense_Mutation p.P274L 0.88 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 19 30934902 30934902 C T ZNF536 Missense_Mutation p.L145F 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 30934976 30934976 G A ZNF536 Silent p.Q169Q 0.35 TCGA-D3-A8GI-06 19 30935630 30935630 C T ZNF536 Silent p.F387F 0.41 TCGA-D3-A8GI-06 19 31039693 31039693 C T ZNF536 Missense_Mutation p.S1056L 0.37 tolerated_low_confidence(0.25) benign(0.005) TCGA-D3-A8GI-06 19 3119268 3119268 C T GNA11 Missense_Mutation p.S267F 0.85 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 19 327873 327873 G A MIER2 Silent p.T120T 0.82 TCGA-D3-A8GI-06 19 32847594 32847594 C T ZNF507 Missense_Mutation p.P734S 0.34 tolerated(0.73) benign(0.002) TCGA-D3-A8GI-06 19 3290371 3290371 C T CELF5 Silent p.F443F 0.75 TCGA-D3-A8GI-06 19 32945868 32945868 C T DPY19L3 Silent p.F337F 0.39 TCGA-D3-A8GI-06 19 32971360 32971360 C T DPY19L3 Missense_Mutation p.S629F 0.37 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GI-06 19 33517434 33517434 G A RHPN2 Missense_Mutation p.S97L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 33621085 33621085 C T GPATCH1 3'UTR 0.30 TCGA-D3-A8GI-06 19 33639805 33639805 C T WDR88 Missense_Mutation p.S223F 0.35 tolerated(0.54) benign(0.086) TCGA-D3-A8GI-06 19 33991904 33991904 G A PEPD Silent p.I111I 0.44 TCGA-D3-A8GI-06 19 34180181 34180181 C T CHST8 Missense_Mutation p.P5L 0.41 tolerated_low_confidence(0.22) benign(0.001) TCGA-D3-A8GI-06 19 34824683 34824683 C T KIAA0355 Silent p.I446I 0.48 TCGA-D3-A8GI-06 19 35251253 35251253 A C ZNF599 Missense_Mutation p.S151R 0.32 tolerated(0.08) benign(0.002) TCGA-D3-A8GI-06 19 35510405 35510405 C T GRAMD1A Silent p.I481I 0.43 TCGA-D3-A8GI-06 19 35510406 35510406 C T GRAMD1A Silent p.L482L 0.44 TCGA-D3-A8GI-06 19 35514337 35514337 C T GRAMD1A Silent p.F656F 0.43 TCGA-D3-A8GI-06 19 35524753 35524753 C T SCN1B Silent p.N186N 0.54 TCGA-D3-A8GI-06 19 35617908 35617908 G A LGI4 Silent p.F214F 0.31 TCGA-D3-A8GI-06 19 35715950 35715950 G A FAM187B Silent p.F296F 0.38 TCGA-D3-A8GI-06 19 35718879 35718879 G A FAM187B Silent p.P235P 0.44 TCGA-D3-A8GI-06 19 35757400 35757400 G A LSR Missense_Mutation p.G354E 0.45 tolerated(0.08) probably_damaging(0.997) TCGA-D3-A8GI-06 19 35832012 35832012 G A CD22 Nonsense_Mutation p.W493* 0.52 TCGA-D3-A8GI-06 19 35842822 35842822 C T FFAR1 Missense_Mutation p.S123F 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 35850213 35850213 C T FFAR3 Silent p.L141L 0.17 TCGA-D3-A8GI-06 19 35850494 35850494 C T FFAR3 Silent p.F234F 0.19 TCGA-D3-A8GI-06 19 35850713 35850713 G A FFAR3 Missense_Mutation p.M307I 0.29 tolerated(0.34) benign(0) TCGA-D3-A8GI-06 19 35979579 35979579 G A KRTDAP Silent p.I51I 0.40 TCGA-D3-A8GI-06 19 36004133 36004133 C T DMKN Missense_Mutation p.G82E 0.50 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GI-06 19 36108077 36108077 C T HAUS5 Silent p.G179G 0.44 TCGA-D3-A8GI-06 19 36212365 36212365 C T KMT2B Nonsense_Mutation p.R706* 0.42 TCGA-D3-A8GI-06 19 36221457 36221457 C T KMT2B Missense_Mutation p.S1739F 0.44 probably_damaging(0.99) TCGA-D3-A8GI-06 19 36297619 36297619 T A PRODH2 Missense_Mutation p.E340D 0.51 tolerated(0.2) benign(0.083) TCGA-D3-A8GI-06 19 36321772 36321772 C T NPHS1 Missense_Mutation p.G1190R 0.38 tolerated(0.18) benign(0.038) TCGA-D3-A8GI-06 19 36342248 36342248 C T NPHS1 Missense_Mutation p.D105N 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 36370026 36370026 C T APLP1 Silent p.I588I 0.52 TCGA-D3-A8GI-06 19 3643380 3643380 C T PIP5K1C Splice_Site p.X504_splice 0.54 TCGA-D3-A8GI-06 19 36832236 36832236 G A ZFP14 Silent p.I164I 0.41 TCGA-D3-A8GI-06 19 36940208 36940208 G A ZNF566 Missense_Mutation p.P311S 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GI-06 19 37642637 37642637 C A ZNF585A Nonsense_Mutation p.E667* 0.35 TCGA-D3-A8GI-06 19 37644179 37644179 G A ZNF585A Missense_Mutation p.H153Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 19 37733854 37733854 C T ZNF383 Missense_Mutation p.S239L 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 19 3783976 3783976 C T MATK Missense_Mutation p.E141K 0.40 tolerated(0.25) possibly_damaging(0.572) TCGA-D3-A8GI-06 19 38230825 38230825 G A ZNF573 Missense_Mutation p.P189L 0.42 deleterious(0.03) benign(0.239) TCGA-D3-A8GI-06 19 38643517 38643517 C T SIPA1L3 Missense_Mutation p.P1191S 0.48 tolerated(0.27) benign(0.003) TCGA-D3-A8GI-06 19 38893773 38893773 G A FAM98C 5'Flank 0.57 TCGA-D3-A8GI-06 19 38976781 38976781 C T RYR1 Missense_Mutation p.P1829L 0.46 probably_damaging(0.991) TCGA-D3-A8GI-06 19 39009961 39009961 G A RYR1 Missense_Mutation p.E3376K 0.36 benign(0.043) TCGA-D3-A8GI-06 19 39019287 39019287 C T RYR1 Silent p.I3662I 0.45 TCGA-D3-A8GI-06 19 39421142 39421142 C T SARS2 Missense_Mutation p.G79R 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GI-06 19 39600775 39600775 C T PAPL 3'UTR 0.37 TCGA-D3-A8GI-06 19 39734719 39734719 G A IFNL3 Missense_Mutation p.P113S 0.40 tolerated(0.55) benign(0.004) TCGA-D3-A8GI-06 19 39787228 39787228 C T IFNL1 Missense_Mutation p.A56V 0.47 deleterious(0.04) benign(0.309) TCGA-D3-A8GI-06 19 39787229 39787229 C T IFNL1 Silent p.A56A 0.47 TCGA-D3-A8GI-06 19 39898726 39898726 A G ZFP36 Missense_Mutation p.K129R 0.42 deleterious(0) possibly_damaging(0.908) TCGA-D3-A8GI-06 19 39912889 39912889 C T PLEKHG2 Silent p.I546I 0.42 TCGA-D3-A8GI-06 19 39913398 39913398 C T PLEKHG2 Silent p.F568F 0.40 TCGA-D3-A8GI-06 19 39914034 39914034 C T PLEKHG2 Silent p.A780A 0.25 TCGA-D3-A8GI-06 19 40095297 40095297 G A LGALS13 Missense_Mutation p.G24E 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 40095298 40095298 G A LGALS13 Silent p.G24G 0.31 TCGA-D3-A8GI-06 19 40225645 40225645 G A CLC Silent p.A28A 0.43 TCGA-D3-A8GI-06 19 40368720 40368720 G A FCGBP Missense_Mutation p.H4210Y 0.18 benign(0.415) TCGA-D3-A8GI-06 19 40408536 40408536 G A FCGBP Missense_Mutation p.P1435S 0.46 benign(0.014) TCGA-D3-A8GI-06 19 40433261 40433261 G A FCGBP Silent p.I336I 0.33 TCGA-D3-A8GI-06 19 40873723 40873723 C T PLD3 Silent p.I122I 0.38 TCGA-D3-A8GI-06 19 40902644 40902644 G A PRX Missense_Mutation p.P539S 0.40 deleterious(0.02) possibly_damaging(0.803) TCGA-D3-A8GI-06 19 40904341 40904341 G A PRX Intron 0.56 TCGA-D3-A8GI-06 19 41009737 41009737 G A SPTBN4 Missense_Mutation p.D455N 0.29 deleterious(0) possibly_damaging(0.67) TCGA-D3-A8GI-06 19 41056143 41056143 G A SPTBN4 Splice_Site p.X1529_splice 0.42 TCGA-D3-A8GI-06 19 41450271 41450271 C T AC092071.1 5'Flank 0.62 TCGA-D3-A8GI-06 19 41594887 41594887 C T CYP2A13 Silent p.V78V 0.38 TCGA-D3-A8GI-06 19 41726666 41726666 C T AXL Missense_Mutation p.R71W 0.53 deleterious(0.03) probably_damaging(0.974) TCGA-D3-A8GI-06 19 41898789 41898789 G A EXOSC5 Missense_Mutation p.P82L 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GI-06 19 41898790 41898790 G A EXOSC5 Missense_Mutation p.P82S 0.36 tolerated(0.05) probably_damaging(0.95) TCGA-D3-A8GI-06 19 42133393 42133393 G A CEACAM4 5'UTR 0.32 TCGA-D3-A8GI-06 19 4217028 4217028 G A ANKRD24 Missense_Mutation p.G624E 0.50 tolerated_low_confidence(0.11) benign(0.002) TCGA-D3-A8GI-06 19 42224866 42224866 C T CEACAM5 Missense_Mutation p.S599F 0.43 tolerated(0.28) probably_damaging(0.985) TCGA-D3-A8GI-06 19 42342256 42342256 G A LYPD4 Silent p.S97S 0.44 TCGA-D3-A8GI-06 19 42352849 42352849 C T DMRTC2 Intron 0.37 TCGA-D3-A8GI-06 19 42383333 42383333 C T CD79A Missense_Mutation p.S118F 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 42510925 42510925 C T GRIK5 Missense_Mutation p.A637T 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 42583638 42583638 C T ZNF574 Missense_Mutation p.R294W 0.36 deleterious(0.02) benign(0.135) TCGA-D3-A8GI-06 19 42584693 42584693 C T ZNF574 Silent p.F645F 0.34 TCGA-D3-A8GI-06 19 42814775 42814775 C T PRR19 Silent p.P318P 0.40 TCGA-D3-A8GI-06 19 42822027 42822027 C T TMEM145 Missense_Mutation p.T356I 0.43 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 19 4283154 4283154 G A SHD Silent p.R169R 0.40 TCGA-D3-A8GI-06 19 42837791 42837791 C T MEGF8 Silent p.F74F 0.39 TCGA-D3-A8GI-06 19 4288247 4288247 C T SHD Missense_Mutation p.H242Y 0.18 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GI-06 19 43013172 43013172 C T CEACAM1 3'UTR 0.32 TCGA-D3-A8GI-06 19 43025445 43025445 G A CEACAM1 Missense_Mutation p.T311I 0.45 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A8GI-06 19 4305954 4305954 G A FSD1 Silent p.R9R 0.36 TCGA-D3-A8GI-06 19 43093757 43093757 G A CEACAM8 Silent p.L185L 0.46 TCGA-D3-A8GI-06 19 43233946 43233946 G A PSG3 Silent p.V324V 0.35 TCGA-D3-A8GI-06 19 43233969 43233969 C T PSG3 Missense_Mutation p.G317S 0.42 tolerated(0.52) possibly_damaging(0.483) TCGA-D3-A8GI-06 19 43233987 43233987 C T PSG3 Missense_Mutation p.E311K 0.42 tolerated(0.29) possibly_damaging(0.734) TCGA-D3-A8GI-06 19 43244625 43244625 C T PSG3 5'UTR 0.48 TCGA-D3-A8GI-06 19 43258618 43258618 C T PSG8 Silent p.G370G 0.26 TCGA-D3-A8GI-06 19 43259371 43259371 C T PSG8 Missense_Mutation p.E253K 0.25 tolerated(0.26) probably_damaging(0.973) TCGA-D3-A8GI-06 19 43343912 43343912 G A PSG10P 3'Flank 0.30 TCGA-D3-A8GI-06 19 43348544 43348544 C T PSG10P RNA 0.28 TCGA-D3-A8GI-06 19 43348644 43348644 C T PSG10P RNA 0.18 TCGA-D3-A8GI-06 19 43349246 43349246 C T PSG10P RNA 0.30 TCGA-D3-A8GI-06 19 43372286 43372286 C T PSG1 Missense_Mutation p.E404K 0.43 tolerated(0.26) benign(0.037) TCGA-D3-A8GI-06 19 43372307 43372307 G A PSG1 Missense_Mutation p.R397C 0.40 deleterious(0) possibly_damaging(0.655) TCGA-D3-A8GI-06 19 43411128 43411128 G A PSG6 Missense_Mutation p.R396C 0.36 deleterious(0.01) benign(0.126) TCGA-D3-A8GI-06 19 43420287 43420287 G A PSG6 Silent p.V139V 0.45 TCGA-D3-A8GI-06 19 43428944 43428944 G A PSG7 3'UTR 0.36 TCGA-D3-A8GI-06 19 43430867 43430867 C T PSG7 Silent p.P237P 0.49 TCGA-D3-A8GI-06 19 43519371 43519371 A G PSG11 Silent p.F287F 0.31 TCGA-D3-A8GI-06 19 43519401 43519401 C T PSG11 Silent p.G277G 0.33 TCGA-D3-A8GI-06 19 43585049 43585049 G A PSG2 Silent p.F138F 0.39 TCGA-D3-A8GI-06 19 43585173 43585173 C T PSG2 Missense_Mutation p.G97E 0.39 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 19 43585174 43585174 C T PSG2 Missense_Mutation p.G97R 0.39 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 19 4365579 4365579 G T SH3GL1 Silent p.I77I 0.34 TCGA-D3-A8GI-06 19 43679421 43679421 G A PSG5 Missense_Mutation p.R304C 0.39 deleterious(0.04) probably_damaging(0.982) TCGA-D3-A8GI-06 19 43679506 43679506 A T PSG5 Silent p.I275I 0.42 TCGA-D3-A8GI-06 19 43698733 43698733 G A PSG4 Silent p.L334L 0.43 TCGA-D3-A8GI-06 19 43699232 43699232 C T PSG4 Silent p.T301T 0.41 TCGA-D3-A8GI-06 19 43699295 43699295 G A PSG4 Silent p.L280L 0.38 TCGA-D3-A8GI-06 19 43866434 43866434 C T CD177 3'UTR 0.41 TCGA-D3-A8GI-06 19 43920104 43920104 C T TEX101 Silent p.I29I 0.46 TCGA-D3-A8GI-06 19 4409404 4409404 C T CHAF1A Missense_Mutation p.S203L 0.50 tolerated(0.2) benign(0.194) TCGA-D3-A8GI-06 19 44127374 44127374 G A CADM4 3'UTR 0.38 TCGA-D3-A8GI-06 19 44252000 44252000 G A SMG9 Missense_Mutation p.A92V 0.45 tolerated(0.34) benign(0.016) TCGA-D3-A8GI-06 19 44377570 44377570 G A ZNF404 Missense_Mutation p.H266Y 0.47 deleterious(0) possibly_damaging(0.578) TCGA-D3-A8GI-06 19 44378176 44378176 C T ZNF404 Missense_Mutation p.E64K 0.42 tolerated(0.08) benign(0.091) TCGA-D3-A8GI-06 19 44471383 44471383 C T ZNF221 Missense_Mutation p.L577F 0.42 tolerated(0.15) probably_damaging(0.943) TCGA-D3-A8GI-06 19 44662295 44662295 C T ZNF234 3'UTR 0.41 TCGA-D3-A8GI-06 19 44681312 44681312 C T ZNF226 Missense_Mutation p.H633Y 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 44892134 44892134 G A ZNF285 Silent p.I91I 0.46 TCGA-D3-A8GI-06 19 44933936 44933936 G A ZNF229 Silent p.P340P 0.37 TCGA-D3-A8GI-06 19 44933937 44933937 G A ZNF229 Missense_Mutation p.P340L 0.38 tolerated(0.53) benign(0.007) TCGA-D3-A8GI-06 19 44933938 44933938 G A ZNF229 Missense_Mutation p.P340S 0.37 tolerated(0.39) benign(0.138) TCGA-D3-A8GI-06 19 45015122 45015122 G A CEACAM20 RNA 0.54 TCGA-D3-A8GI-06 19 4511353 4511353 C T PLIN4 Silent p.A859A 0.32 TCGA-D3-A8GI-06 19 45208883 45208883 C T CEACAM16 Missense_Mutation p.L229F 0.56 tolerated(0.71) possibly_damaging(0.572) TCGA-D3-A8GI-06 19 45262850 45262850 C T BCL3 Missense_Mutation p.S448F 0.45 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 19 45316539 45316539 G A BCAM Silent p.P179P 0.48 TCGA-D3-A8GI-06 19 45316540 45316540 G A BCAM Missense_Mutation p.A180T 0.49 deleterious(0.04) possibly_damaging(0.653) TCGA-D3-A8GI-06 19 45655209 45655209 G A NKPD1 Missense_Mutation p.P829L 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.851) TCGA-D3-A8GI-06 19 45810118 45810118 C T CKM Missense_Mutation p.E346K 0.44 deleterious(0) possibly_damaging(0.903) TCGA-D3-A8GI-06 19 45810758 45810758 C T CKM Missense_Mutation p.E310K 0.21 tolerated(0.58) benign(0.106) TCGA-D3-A8GI-06 19 45991767 45991767 C T RTN2 Missense_Mutation p.G487S 0.40 tolerated(0.93) benign(0.019) TCGA-D3-A8GI-06 19 45997622 45997622 G T RTN2 Missense_Mutation p.Q206K 0.30 tolerated_low_confidence(0.07) benign(0.055) TCGA-D3-A8GI-06 19 46094122 46094122 C T GPR4 Missense_Mutation p.A335T 0.45 tolerated(0.57) benign(0.001) TCGA-D3-A8GI-06 19 46094974 46094974 C T GPR4 Missense_Mutation p.E51K 0.53 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 19 46178232 46178232 A G GIPR Intron 0.36 TCGA-D3-A8GI-06 19 46375625 46375625 C T FOXA3 Missense_Mutation p.S121F 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 19 46376072 46376072 C T FOXA3 Missense_Mutation p.A270V 0.45 tolerated(0.22) benign(0.002) TCGA-D3-A8GI-06 19 4664927 4664927 G A C19orf10 Missense_Mutation p.T83I 0.53 tolerated(0.52) benign(0.003) TCGA-D3-A8GI-06 19 46733762 46733762 G A IGFL1 Missense_Mutation p.R104K 0.41 tolerated(0.27) benign(0.013) TCGA-D3-A8GI-06 19 47231884 47231884 G A STRN4 Missense_Mutation p.H344Y 0.37 tolerated(1) benign(0.354) TCGA-D3-A8GI-06 19 47823140 47823140 C T C5AR1 Missense_Mutation p.P36S 0.40 tolerated(0.63) benign(0.007) TCGA-D3-A8GI-06 19 47823259 47823259 C T C5AR1 Silent p.F75F 0.45 TCGA-D3-A8GI-06 19 47844620 47844620 G A C5AR2 Silent p.V188V 0.38 TCGA-D3-A8GI-06 19 47844879 47844879 C T C5AR2 Missense_Mutation p.L275F 0.33 tolerated(0.06) benign(0.066) TCGA-D3-A8GI-06 19 4792889 4792889 C T FEM1A Silent p.P341P 0.45 TCGA-D3-A8GI-06 19 47960308 47960308 C T SLC8A2 Missense_Mutation p.E407K 0.50 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GI-06 19 48198264 48198264 C T GLTSCR1 Silent p.V1001V 0.45 TCGA-D3-A8GI-06 19 48201971 48201971 C T GLTSCR1 Missense_Mutation p.A1110V 0.44 probably_damaging(0.99) TCGA-D3-A8GI-06 19 48259948 48259948 C T GLTSCR2 Silent p.F459F 0.41 TCGA-D3-A8GI-06 19 48869192 48869192 G A SYNGR4 Silent p.G31G 0.50 TCGA-D3-A8GI-06 19 48908557 48908557 C T GRIN2D Silent p.L344L 0.46 TCGA-D3-A8GI-06 19 48925101 48925101 C T GRIN2D Silent p.S717S 0.44 TCGA-D3-A8GI-06 19 49004311 49004311 G T LMTK3 Missense_Mutation p.R394S 0.50 probably_damaging(0.97) TCGA-D3-A8GI-06 19 49004312 49004312 G A LMTK3 Silent p.V393V 0.50 TCGA-D3-A8GI-06 19 49216789 49216789 G A MAMSTR Missense_Mutation p.P328L 0.46 deleterious(0.02) possibly_damaging(0.713) TCGA-D3-A8GI-06 19 49259595 49259595 C T FGF21 Silent p.S34S 0.48 TCGA-D3-A8GI-06 19 49464242 49464242 C T BAX Missense_Mutation p.P182L 0.62 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 19 49513140 49513140 G T RUVBL2 Splice_Site p.X190_splice 0.37 TCGA-D3-A8GI-06 19 49644711 49644711 C T PPFIA3 Silent p.D801D 0.59 TCGA-D3-A8GI-06 19 49674631 49674631 C T TRPM4 Missense_Mutation p.P272S 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 19 49894143 49894143 G A CCDC155 Translation_Start_Site p.M1? 0.74 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 19 49912284 49912284 G A CCDC155 Missense_Mutation p.D352N 0.29 deleterious(0.01) possibly_damaging(0.664) TCGA-D3-A8GI-06 19 49936114 49936114 G A SLC17A7 Missense_Mutation p.S324F 0.44 tolerated(0.43) benign(0.365) TCGA-D3-A8GI-06 19 49937112 49937112 G A SLC17A7 Silent p.I246I 0.37 TCGA-D3-A8GI-06 19 50086975 50086975 G A PRRG2 Splice_Site p.X87_splice 0.42 TCGA-D3-A8GI-06 19 50099984 50099984 C T PRR12 Missense_Mutation p.P798S 0.57 possibly_damaging(0.803) TCGA-D3-A8GI-06 19 50208320 50208320 C T CPT1C Silent p.V276V 0.34 TCGA-D3-A8GI-06 19 50209247 50209247 G A CPT1C Missense_Mutation p.R349Q 0.50 tolerated(0.5) benign(0.002) TCGA-D3-A8GI-06 19 50285900 50285900 C T AP2A1 Missense_Mutation p.A131V 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 50285901 50285901 C T AP2A1 Silent p.A131A 0.47 TCGA-D3-A8GI-06 19 50335198 50335198 C T MED25 Silent p.P412P 0.35 TCGA-D3-A8GI-06 19 50474511 50474511 C T SIGLEC16 RNA 0.44 TCGA-D3-A8GI-06 19 50548453 50548453 C T ZNF473 Silent p.S251S 0.43 TCGA-D3-A8GI-06 19 50548863 50548863 C T ZNF473 Missense_Mutation p.S388L 0.39 tolerated(0.3) benign(0.003) TCGA-D3-A8GI-06 19 50944141 50944141 G A MYBPC2 Missense_Mutation p.V193M 0.49 tolerated(0.06) benign(0.299) TCGA-D3-A8GI-06 19 50949309 50949309 G A MYBPC2 Missense_Mutation p.E436K 0.58 tolerated(0.14) benign(0.275) TCGA-D3-A8GI-06 19 51016186 51016186 G T ASPDH Missense_Mutation p.L94M 0.39 tolerated(0.59) possibly_damaging(0.617) TCGA-D3-A8GI-06 19 51219609 51219609 C T SHANK1 Missense_Mutation p.D128N 0.41 probably_damaging(0.945) TCGA-D3-A8GI-06 19 51273979 51273979 C T GPR32 Missense_Mutation p.S41F 0.96 tolerated(0.69) benign(0.001) TCGA-D3-A8GI-06 19 51322602 51322602 C T KLK1 Missense_Mutation p.D213N 0.57 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 51323154 51323154 C T KLK1 Splice_Site p.X211_splice 0.45 TCGA-D3-A8GI-06 19 5133912 5133912 G A KDM4B Missense_Mutation p.G642E 0.45 benign(0.102) TCGA-D3-A8GI-06 19 5135385 5135385 C T KDM4B Silent p.S707S 0.60 TCGA-D3-A8GI-06 19 51363508 51363508 G A KLK3 3'UTR 0.35 TCGA-D3-A8GI-06 19 51470475 51470475 C T KLK6 Silent p.G49G 0.41 TCGA-D3-A8GI-06 19 51628189 51628189 G A SIGLEC9 5'UTR 0.29 TCGA-D3-A8GI-06 19 51729222 51729222 C T CD33 Silent p.S194S 0.47 TCGA-D3-A8GI-06 19 51958745 51958745 G A SIGLEC8 Silent p.F326F 0.46 TCGA-D3-A8GI-06 19 51958829 51958829 C T SIGLEC8 Silent p.G298G 0.47 TCGA-D3-A8GI-06 19 51981788 51981788 G A CEACAM18 Silent p.G25G 0.42 TCGA-D3-A8GI-06 19 52004616 52004616 C T SIGLEC12 Silent p.E124E 0.38 TCGA-D3-A8GI-06 19 52250244 52250244 C T FPR1 Missense_Mutation p.E2K 0.45 deleterious(0.02) possibly_damaging(0.461) TCGA-D3-A8GI-06 19 52272349 52272349 C T FPR2 Silent p.I146I 0.48 TCGA-D3-A8GI-06 19 52272677 52272677 C T FPR2 Missense_Mutation p.P256S 0.47 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A8GI-06 19 52272938 52272938 C T FPR2 Missense_Mutation p.P343S 0.47 tolerated(0.29) benign(0.008) TCGA-D3-A8GI-06 19 52327972 52327972 C T FPR3 Missense_Mutation p.A324V 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 19 52393966 52393966 G A ZNF649 Missense_Mutation p.P475S 0.47 tolerated(0.53) benign(0.006) TCGA-D3-A8GI-06 19 52496990 52496990 G A ZNF615 Nonsense_Mutation p.Q458* 0.36 TCGA-D3-A8GI-06 19 53015248 53015248 T C ZNF578 Silent p.P538P 0.45 TCGA-D3-A8GI-06 19 53085854 53085854 C T ZNF701 Missense_Mutation p.S247F 0.42 tolerated(0.75) possibly_damaging(0.885) TCGA-D3-A8GI-06 19 53208414 53208414 G A ZNF611 Missense_Mutation p.R632C 0.42 tolerated(0.08) possibly_damaging(0.81) TCGA-D3-A8GI-06 19 53270132 53270132 G A ZNF600 Missense_Mutation p.R293C 0.36 tolerated(0.06) benign(0.438) TCGA-D3-A8GI-06 19 53270527 53270527 G A ZNF600 Missense_Mutation p.S161F 0.41 deleterious(0.01) possibly_damaging(0.823) TCGA-D3-A8GI-06 19 53303279 53303279 A G ZNF28 Missense_Mutation p.Y607H 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 19 53453028 53453028 G A ZNF816 3'UTR 0.43 TCGA-D3-A8GI-06 19 53761815 53761815 C T VN1R2 Missense_Mutation p.L63F 0.36 deleterious_low_confidence(0) benign(0.184) TCGA-D3-A8GI-06 19 53761927 53761927 G A VN1R2 Missense_Mutation p.G100E 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 53793122 53793122 G A BIRC8 Missense_Mutation p.S169L 0.45 tolerated(0.4) benign(0.013) TCGA-D3-A8GI-06 19 53793578 53793578 G A BIRC8 Missense_Mutation p.S17F 0.48 deleterious(0.05) possibly_damaging(0.873) TCGA-D3-A8GI-06 19 53793698 53793698 C T BIRC8 5'UTR 0.37 TCGA-D3-A8GI-06 19 53856585 53856585 C T ZNF845 Missense_Mutation p.P886L 0.39 deleterious(0.03) benign(0.301) TCGA-D3-A8GI-06 19 53911937 53911937 C T ZNF765 Missense_Mutation p.H377Y 0.48 deleterious(0.01) possibly_damaging(0.602) TCGA-D3-A8GI-06 19 54072590 54072590 G A ZNF331 5'UTR 0.43 TCGA-D3-A8GI-06 19 54137815 54137815 G A DPRX Missense_Mutation p.R20Q 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A8GI-06 19 54313320 54313320 C T NLRP12 Silent p.G531G 0.35 TCGA-D3-A8GI-06 19 54313997 54313997 G A NLRP12 Missense_Mutation p.P306S 0.39 tolerated(0.51) benign(0.08) TCGA-D3-A8GI-06 19 54318189 54318189 C T NLRP12 Missense_Mutation p.E115K 0.38 tolerated(0.4) benign(0.005) TCGA-D3-A8GI-06 19 54327203 54327203 T G NLRP12 Missense_Mutation p.T76P 0.44 deleterious(0) possibly_damaging(0.659) TCGA-D3-A8GI-06 19 54377329 54377329 C T MYADM Silent p.F182F 0.40 TCGA-D3-A8GI-06 19 5456381 5456381 C T ZNRF4 Silent p.T293T 0.37 TCGA-D3-A8GI-06 19 54742806 54742806 G A LILRA6 3'UTR 0.17 TCGA-D3-A8GI-06 19 54744265 54744265 G A LILRA6 Silent p.F381F 0.15 TCGA-D3-A8GI-06 19 54745638 54745638 C T LILRA6 Missense_Mutation p.E158K 0.16 deleterious(0.03) possibly_damaging(0.892) TCGA-D3-A8GI-06 19 54760581 54760581 C T LILRB5 Silent p.G42G 0.42 TCGA-D3-A8GI-06 19 54783290 54783290 G A LILRB2 Missense_Mutation p.R190C 0.43 tolerated(0.05) benign(0.037) TCGA-D3-A8GI-06 19 54802673 54802673 A C LILRA3 Silent p.V256V 0.41 TCGA-D3-A8GI-06 19 54803637 54803637 C T LILRA3 Missense_Mutation p.E63K 0.47 deleterious(0.03) possibly_damaging(0.875) TCGA-D3-A8GI-06 19 55048109 55048109 C T KIR3DX1 Missense_Mutation p.L226F 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 19 55087483 55087483 G A LILRA2 Missense_Mutation p.A388T 0.36 deleterious(0.02) benign(0.219) TCGA-D3-A8GI-06 19 55098839 55098839 C T LILRA2 3'UTR 0.44 TCGA-D3-A8GI-06 19 55112374 55112374 G A LILRA1 3'UTR 0.35 TCGA-D3-A8GI-06 19 55143457 55143457 C T LILRB1 Nonsense_Mutation p.Q144* 0.48 TCGA-D3-A8GI-06 19 55179193 55179193 C T LILRB4 Silent p.F383F 0.27 TCGA-D3-A8GI-06 19 55220596 55220596 G A AC098784.2 3'Flank 0.42 TCGA-D3-A8GI-06 19 55290090 55290090 C T KIR2DL1 Missense_Mutation p.P231S 0.40 tolerated(0.13) possibly_damaging(0.629) TCGA-D3-A8GI-06 19 55295396 55295396 C T KIR2DL1 3'UTR 0.62 TCGA-D3-A8GI-06 19 55299887 55299887 C T KIR2DL1 3'Flank 0.74 TCGA-D3-A8GI-06 19 55333055 55333055 G A KIR3DL1 Missense_Mutation p.G231S 0.86 tolerated(0.1) benign(0.018) TCGA-D3-A8GI-06 19 55401076 55401076 C T FCAR Silent p.V237V 0.41 TCGA-D3-A8GI-06 19 55451344 55451344 G A NLRP7 Silent p.V281V 0.50 TCGA-D3-A8GI-06 19 55493574 55493574 G A NLRP2 Missense_Mutation p.E170K 0.46 tolerated(0.72) benign(0.01) TCGA-D3-A8GI-06 19 55493801 55493801 C T NLRP2 Silent p.L245L 0.57 TCGA-D3-A8GI-06 19 55512320 55512320 G A NLRP2 3'UTR 0.35 TCGA-D3-A8GI-06 19 55665435 55665435 G A TNNI3 Missense_Mutation p.A171V 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GI-06 19 55666180 55666180 G A TNNI3 Missense_Mutation p.H101Y 0.43 deleterious(0.04) possibly_damaging(0.864) TCGA-D3-A8GI-06 19 55687163 55687163 G A SYT5 Silent p.L152L 0.49 TCGA-D3-A8GI-06 19 55707899 55707899 C T PTPRH Missense_Mutation p.E750K 0.41 probably_damaging(0.951) TCGA-D3-A8GI-06 19 55718334 55718334 G A PTPRH Intron 0.32 TCGA-D3-A8GI-06 19 55879737 55879737 G A IL11 Silent p.L90L 0.57 TCGA-D3-A8GI-06 19 56104107 56104107 G A FIZ1 Silent p.S400S 0.51 TCGA-D3-A8GI-06 19 56320310 56320310 C T NLRP11 Missense_Mutation p.E556K 0.44 deleterious(0.01) probably_damaging(0.922) TCGA-D3-A8GI-06 19 56419270 56419270 G A NLRP13 Nonsense_Mutation p.Q779* 0.34 TCGA-D3-A8GI-06 19 56423094 56423094 C T NLRP13 Missense_Mutation p.E697K 0.40 tolerated(0.22) benign(0.095) TCGA-D3-A8GI-06 19 56424062 56424062 G A NLRP13 Missense_Mutation p.S374L 0.42 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 19 56424552 56424552 C T NLRP13 Missense_Mutation p.E211K 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 19 56443596 56443596 G A NLRP13 Nonsense_Mutation p.Q28* 0.44 TCGA-D3-A8GI-06 19 56459460 56459460 C T NLRP8 Silent p.L64L 0.47 TCGA-D3-A8GI-06 19 56459573 56459573 C T NLRP8 Missense_Mutation p.S102L 0.51 tolerated(0.68) benign(0.006) TCGA-D3-A8GI-06 19 56466655 56466655 G A NLRP8 Missense_Mutation p.E411K 0.43 tolerated(0.19) benign(0.023) TCGA-D3-A8GI-06 19 56487541 56487541 G A NLRP8 Missense_Mutation p.M916I 0.40 tolerated(0.22) benign(0.006) TCGA-D3-A8GI-06 19 56539676 56539676 G A NLRP5 Missense_Mutation p.E693K 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 56544101 56544101 C T NLRP5 Silent p.L801L 0.35 TCGA-D3-A8GI-06 19 56569650 56569650 C T NLRP5 Missense_Mutation p.S1115F 0.37 deleterious(0) possibly_damaging(0.87) TCGA-D3-A8GI-06 19 56696653 56696653 C T GALP 3'UTR 0.48 TCGA-D3-A8GI-06 19 57027681 57027681 C T ZNF471 Missense_Mutation p.S24F 0.48 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GI-06 19 57328787 57328787 G A PEG3 Silent p.F341F 0.52 TCGA-D3-A8GI-06 19 57347425 57347425 C T PEG3 5'UTR 0.60 TCGA-D3-A8GI-06 19 57642026 57642026 G A USP29 Silent p.V661V 0.42 TCGA-D3-A8GI-06 19 57642562 57642562 A C USP29 Missense_Mutation p.H840P 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 19 57642875 57642875 G A USP29 3'UTR 0.67 TCGA-D3-A8GI-06 19 57647377 57647377 C T ZIM3 Missense_Mutation p.E110K 0.41 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 19 57666635 57666635 C T DUXA Missense_Mutation p.G182S 0.47 tolerated_low_confidence(0.12) possibly_damaging(0.732) TCGA-D3-A8GI-06 19 58017996 58017996 C T ZNF773 Missense_Mutation p.S178F 0.38 deleterious(0) benign(0.429) TCGA-D3-A8GI-06 19 58152816 58152816 C T ZNF211 Missense_Mutation p.S386L 0.45 tolerated(0.78) possibly_damaging(0.636) TCGA-D3-A8GI-06 19 58190269 58190269 C T ZSCAN4 Missense_Mutation p.S433F 0.37 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 19 5832461 5832461 C T FUT6 Missense_Mutation p.D40N 0.41 tolerated(0.49) benign(0.002) TCGA-D3-A8GI-06 19 58452428 58452428 G A ZNF256 Missense_Mutation p.S583F 0.40 tolerated(0.2) benign(0.003) TCGA-D3-A8GI-06 19 58578542 58578542 C T ZNF135 Silent p.I254I 0.49 TCGA-D3-A8GI-06 19 58718355 58718355 C T ZNF274 Silent p.P175P 0.59 TCGA-D3-A8GI-06 19 58946102 58946102 C T ZNF132 Missense_Mutation p.E237K 0.40 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 19 58966440 58966440 C T ZNF324B Intron 0.25 TCGA-D3-A8GI-06 19 59058843 59058843 C T TRIM28 Silent p.C229C 0.38 TCGA-D3-A8GI-06 19 613277 613277 G A HCN2 Silent p.L538L 0.67 TCGA-D3-A8GI-06 19 6156557 6156557 C T ACSBG2 Missense_Mutation p.L168F 0.45 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A8GI-06 19 6185641 6185641 T G ACSBG2 Missense_Mutation p.L506R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 19 6364483 6364483 C T CLPP Silent p.L130L 0.28 TCGA-D3-A8GI-06 19 6475859 6475859 C T DENND1C Silent p.L256L 0.42 TCGA-D3-A8GI-06 19 6692987 6692987 T C C3 Missense_Mutation p.K1113R 0.42 tolerated(0.22) benign(0.023) TCGA-D3-A8GI-06 19 6696472 6696472 T C C3 Silent p.G956G 0.44 TCGA-D3-A8GI-06 19 6697724 6697724 C T C3 Missense_Mutation p.R841Q 0.42 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 19 6707845 6707845 C T C3 Silent p.T647T 0.44 TCGA-D3-A8GI-06 19 6755183 6755183 G A SH2D3A Missense_Mutation p.P214S 0.43 tolerated(0.66) possibly_damaging(0.84) TCGA-D3-A8GI-06 19 6897191 6897191 C T EMR1 Silent p.P90P 0.39 TCGA-D3-A8GI-06 19 6901910 6901910 G A EMR1 Missense_Mutation p.R180K 0.49 tolerated(0.91) benign(0.021) TCGA-D3-A8GI-06 19 6904183 6904183 C T EMR1 Silent p.F313F 0.38 TCGA-D3-A8GI-06 19 6940172 6940172 G A EMR1 3'UTR 0.24 TCGA-D3-A8GI-06 19 7119567 7119567 G A INSR Silent p.I1229I 0.49 TCGA-D3-A8GI-06 19 7128874 7128874 G A INSR Silent p.F978F 0.40 TCGA-D3-A8GI-06 19 7267810 7267810 G A INSR Silent p.F66F 0.40 TCGA-D3-A8GI-06 19 7570407 7570407 T G C19orf45 Silent p.P300P 0.45 TCGA-D3-A8GI-06 19 7590034 7590034 C T MCOLN1 Silent p.I73I 0.35 TCGA-D3-A8GI-06 19 7618831 7618831 C T PNPLA6 Silent p.I787I 0.47 TCGA-D3-A8GI-06 19 7688624 7688624 G A XAB2 Missense_Mutation p.P371L 0.32 deleterious(0.02) benign(0.062) TCGA-D3-A8GI-06 19 7689286 7689286 G A XAB2 Missense_Mutation p.R290W 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 7831075 7831075 G A CLEC4M Missense_Mutation p.D256N 0.46 deleterious(0.01) benign(0.019) TCGA-D3-A8GI-06 19 7831688 7831688 G A CLEC4M Missense_Mutation p.E311K 0.44 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 19 7964763 7964763 C T LRRC8E Silent p.F452F 0.59 TCGA-D3-A8GI-06 19 806455 806455 C T PTBP1 Missense_Mutation p.P340S 0.83 tolerated(0.07) benign(0.032) TCGA-D3-A8GI-06 19 8127129 8127129 C T CCL25 3'UTR 0.55 TCGA-D3-A8GI-06 19 8130686 8130686 C T FBN3 3'UTR 0.55 TCGA-D3-A8GI-06 19 8130865 8130865 C T FBN3 Missense_Mutation p.E2790K 0.39 deleterious(0.05) benign(0.004) TCGA-D3-A8GI-06 19 8167649 8167649 G A FBN3 Missense_Mutation p.A1683V 0.48 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A8GI-06 19 831971 831971 C T AZU1 3'UTR 1.00 TCGA-D3-A8GI-06 19 8555256 8555256 C T PRAM1 Silent p.L647L 0.50 TCGA-D3-A8GI-06 19 8587604 8587604 G A MYO1F Silent p.S988S 0.37 TCGA-D3-A8GI-06 19 8595223 8595223 C T MYO1F Missense_Mutation p.E729K 0.40 deleterious(0) possibly_damaging(0.877) TCGA-D3-A8GI-06 19 8615513 8615513 C T MYO1F Silent p.G279G 0.42 TCGA-D3-A8GI-06 19 8619425 8619425 C G MYO1F Missense_Mutation p.A88P 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 19 8666016 8666016 C T ADAMTS10 Nonsense_Mutation p.W202* 0.31 TCGA-D3-A8GI-06 19 8808632 8808632 G T ACTL9 Silent p.A140A 0.51 TCGA-D3-A8GI-06 19 8959623 8959623 C T MUC16 Silent p.L14503L 0.43 TCGA-D3-A8GI-06 19 8973977 8973977 C T MUC16 Missense_Mutation p.D14232N 0.50 probably_damaging(0.998) TCGA-D3-A8GI-06 19 9003586 9003586 C T MUC16 Missense_Mutation p.E13352K 0.41 probably_damaging(0.991) TCGA-D3-A8GI-06 19 9011485 9011485 C T MUC16 Silent p.K12916K 0.43 TCGA-D3-A8GI-06 19 9024151 9024151 G A MUC16 Missense_Mutation p.S12374F 0.18 probably_damaging(0.923) TCGA-D3-A8GI-06 19 9046547 9046547 G A MUC16 Missense_Mutation p.P11695L 0.43 benign(0.402) TCGA-D3-A8GI-06 19 9046602 9046602 G A MUC16 Missense_Mutation p.R11677W 0.46 benign(0.098) TCGA-D3-A8GI-06 19 9049734 9049734 C T MUC16 Missense_Mutation p.G10633R 0.49 benign(0.007) TCGA-D3-A8GI-06 19 9056640 9056640 G A MUC16 Missense_Mutation p.S10269L 0.47 benign(0.016) TCGA-D3-A8GI-06 19 9058072 9058072 C T MUC16 Missense_Mutation p.E9792K 0.45 unknown(0) TCGA-D3-A8GI-06 19 9058289 9058289 G A MUC16 Silent p.R9719R 0.38 TCGA-D3-A8GI-06 19 9058317 9058317 G A MUC16 Missense_Mutation p.P9710L 0.52 unknown(0) TCGA-D3-A8GI-06 19 9062389 9062389 C T MUC16 Missense_Mutation p.V8353M 0.51 unknown(0) TCGA-D3-A8GI-06 19 9065432 9065432 C T MUC16 Silent p.E7338E 0.38 TCGA-D3-A8GI-06 19 9066153 9066153 G A MUC16 Missense_Mutation p.S7098F 0.55 unknown(0) TCGA-D3-A8GI-06 19 9067679 9067679 G A MUC16 Silent p.S6589S 0.37 TCGA-D3-A8GI-06 19 9067680 9067680 G A MUC16 Missense_Mutation p.S6589F 0.37 unknown(0) TCGA-D3-A8GI-06 19 9069010 9069010 G A MUC16 Missense_Mutation p.P6146S 0.58 unknown(0) TCGA-D3-A8GI-06 19 9069570 9069570 G A MUC16 Missense_Mutation p.S5959F 0.41 unknown(0) TCGA-D3-A8GI-06 19 9071593 9071593 G A MUC16 Missense_Mutation p.P5285S 0.48 unknown(0) TCGA-D3-A8GI-06 19 9075645 9075645 G A MUC16 Missense_Mutation p.P3934L 0.47 unknown(0) TCGA-D3-A8GI-06 19 9077047 9077047 C T MUC16 Missense_Mutation p.G3467R 0.36 unknown(0) TCGA-D3-A8GI-06 19 9077858 9077858 G A MUC16 Silent p.S3196S 0.43 TCGA-D3-A8GI-06 19 9083218 9083218 G A MUC16 Missense_Mutation p.S2866F 0.32 unknown(0) TCGA-D3-A8GI-06 19 9084779 9084779 C T MUC16 Missense_Mutation p.E2346K 0.49 unknown(0) TCGA-D3-A8GI-06 19 9087008 9087008 C T MUC16 Missense_Mutation p.A1603T 0.36 unknown(0) TCGA-D3-A8GI-06 19 9087189 9087189 G C MUC16 Silent p.T1542T 0.36 TCGA-D3-A8GI-06 19 9087697 9087697 G A MUC16 Missense_Mutation p.S1373L 0.38 unknown(0) TCGA-D3-A8GI-06 19 9088589 9088589 C T MUC16 Missense_Mutation p.E1076K 0.40 unknown(0) TCGA-D3-A8GI-06 19 9090533 9090533 C T MUC16 Missense_Mutation p.E428K 0.41 unknown(0) TCGA-D3-A8GI-06 19 9090928 9090928 G A MUC16 Missense_Mutation p.S296L 0.42 unknown(0) TCGA-D3-A8GI-06 19 9204418 9204418 C T OR1M1 Silent p.L166L 0.46 TCGA-D3-A8GI-06 19 9204779 9204779 C T OR1M1 Missense_Mutation p.P287S 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 19 9213203 9213203 G A OR7G2 Silent p.S260S 0.45 TCGA-D3-A8GI-06 19 9225549 9225549 C T OR7G1 Missense_Mutation p.M297I 0.42 tolerated(0.39) benign(0.009) TCGA-D3-A8GI-06 19 9226341 9226341 G A OR7G1 Silent p.S33S 0.43 TCGA-D3-A8GI-06 19 9236988 9236988 C T OR7G3 Silent p.G213G 0.33 TCGA-D3-A8GI-06 19 9324990 9324990 G A OR7D4 Missense_Mutation p.P175L 0.45 deleterious(0.02) possibly_damaging(0.573) TCGA-D3-A8GI-06 19 9324992 9324992 A T OR7D4 Silent p.I174I 0.46 TCGA-D3-A8GI-06 19 9362049 9362049 C A OR7E24 Silent p.I110I 0.44 TCGA-D3-A8GI-06 19 9362376 9362376 C T OR7E24 Silent p.F219F 0.37 TCGA-D3-A8GI-06 19 9800974 9800974 G A ZNF812 Missense_Mutation p.S402L 0.35 deleterious(0) benign(0.031) TCGA-D3-A8GI-06 1 100176426 100176426 G A FRRS1 Silent p.F520F 0.42 TCGA-D3-A8GI-06 1 100350138 100350138 C T AGL Missense_Mutation p.P854S 0.31 tolerated(0.06) benign(0.254) TCGA-D3-A8GI-06 1 100483250 100483250 C T SLC35A3 Missense_Mutation p.L256F 0.50 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GI-06 1 100535228 100535228 C T HIAT1 Missense_Mutation p.S293F 0.31 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 1 100606542 100606542 C T TRMT13 Silent p.F212F 0.41 TCGA-D3-A8GI-06 1 10067700 10067700 C T RBP7 Missense_Mutation p.S49F 0.46 deleterious(0.01) possibly_damaging(0.885) TCGA-D3-A8GI-06 1 10068302 10068302 C T RBP7 Silent p.T108T 0.33 TCGA-D3-A8GI-06 1 100715326 100715326 C T DBT Silent p.L17L 0.33 TCGA-D3-A8GI-06 1 101005547 101005547 A G GPR88 Missense_Mutation p.E342G 0.44 deleterious(0.02) unknown(0) TCGA-D3-A8GI-06 1 101200321 101200321 C T VCAM1 Nonsense_Mutation p.Q686* 0.34 TCGA-D3-A8GI-06 1 10161240 10161240 G A UBE4B Missense_Mutation p.S141N 0.41 tolerated(0.44) benign(0.213) TCGA-D3-A8GI-06 1 101705374 101705374 G A S1PR1 Silent p.L278L 0.43 TCGA-D3-A8GI-06 1 101705428 101705428 C T S1PR1 Silent p.F296F 0.44 TCGA-D3-A8GI-06 1 10221270 10221270 C T UBE4B Silent p.L1042L 0.39 TCGA-D3-A8GI-06 1 102269863 102269863 C T OLFM3 Nonsense_Mutation p.W436* 0.45 TCGA-D3-A8GI-06 1 102296275 102296275 G A OLFM3 Missense_Mutation p.R109W 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 102296308 102296308 C T OLFM3 Missense_Mutation p.E98K 0.47 tolerated(0.11) probably_damaging(0.995) TCGA-D3-A8GI-06 1 103379246 103379246 C T COL11A1 Missense_Mutation p.G1327S 0.36 unknown(0) TCGA-D3-A8GI-06 1 10352141 10352141 G A KIF1B Silent p.R471R 0.37 TCGA-D3-A8GI-06 1 103544216 103544216 C T COL11A1 Silent p.G162G 0.43 TCGA-D3-A8GI-06 1 10363707 10363707 C T KIF1B Intron 0.38 TCGA-D3-A8GI-06 1 10364458 10364458 C T KIF1B Intron 0.42 TCGA-D3-A8GI-06 1 10423345 10423345 C T KIF1B Nonsense_Mutation p.R1391* 0.37 TCGA-D3-A8GI-06 1 10425667 10425667 C T KIF1B Silent p.I1525I 0.40 TCGA-D3-A8GI-06 1 10707928 10707928 G A CASZ1 Missense_Mutation p.P1143S 0.33 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 1 10719941 10719941 G A CASZ1 Silent p.P386P 0.50 TCGA-D3-A8GI-06 1 108115958 108115958 C T VAV3 Missense_Mutation p.E847K 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-D3-A8GI-06 1 109242103 109242103 C T PRPF38B Missense_Mutation p.R368C 0.42 deleterious(0) unknown(0) TCGA-D3-A8GI-06 1 109270522 109270522 G A FNDC7 Missense_Mutation p.E402K 0.43 deleterious(0.02) possibly_damaging(0.566) TCGA-D3-A8GI-06 1 109271402 109271402 C T FNDC7 Silent p.S506S 0.47 TCGA-D3-A8GI-06 1 109275905 109275905 C T FNDC7 Missense_Mutation p.P631S 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 1 109275906 109275906 C T FNDC7 Missense_Mutation p.P631L 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 110260146 110260146 C T GSTM5 3'UTR 0.33 TCGA-D3-A8GI-06 1 110294726 110294726 C T EPS8L3 Missense_Mutation p.R443K 0.45 tolerated(0.29) benign(0.002) TCGA-D3-A8GI-06 1 110300103 110300103 G A EPS8L3 Silent p.F324F 0.51 TCGA-D3-A8GI-06 1 110714722 110714722 C T SLC6A17 Silent p.I109I 0.45 TCGA-D3-A8GI-06 1 110765795 110765795 C T KCNC4 Silent p.F296F 0.41 TCGA-D3-A8GI-06 1 110996643 110996643 C T PROK1 Nonsense_Mutation p.R45* 0.57 TCGA-D3-A8GI-06 1 11103420 11103420 G A MASP2 Silent p.T239T 0.47 TCGA-D3-A8GI-06 1 11103485 11103485 C T MASP2 Missense_Mutation p.E218K 0.35 deleterious(0) possibly_damaging(0.451) TCGA-D3-A8GI-06 1 111147080 111147080 A T KCNA2 Missense_Mutation p.F109I 0.36 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 1 111216646 111216646 C T KCNA3 Silent p.E262E 0.38 TCGA-D3-A8GI-06 1 1116110 1116110 G A TTLL10 Splice_Site p.X209_splice 0.33 TCGA-D3-A8GI-06 1 111724815 111724815 G A CEPT1 Missense_Mutation p.V241M 0.42 tolerated(0.11) possibly_damaging(0.607) TCGA-D3-A8GI-06 1 111957012 111957012 G A OVGP1 3'UTR 0.53 TCGA-D3-A8GI-06 1 111957343 111957343 C T OVGP1 Missense_Mutation p.G594R 0.39 tolerated_low_confidence(0.2) benign(0.03) TCGA-D3-A8GI-06 1 112031467 112031467 C T ADORA3 Missense_Mutation p.D213N 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 112042487 112042487 C T ADORA3 Intron 0.29 TCGA-D3-A8GI-06 1 112525032 112525032 G A KCND3 Missense_Mutation p.P106L 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GI-06 1 113093300 113093300 G A ST7L Missense_Mutation p.P471L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 113253935 113253935 C T PPM1J Silent p.K333K 0.31 TCGA-D3-A8GI-06 1 114397613 114397613 G A PTPN22 Missense_Mutation p.S200L 0.37 deleterious(0.02) benign(0.106) TCGA-D3-A8GI-06 1 114641869 114641869 G A SYT6 Missense_Mutation p.S319F 0.27 deleterious(0.04) probably_damaging(0.988) TCGA-D3-A8GI-06 1 115130044 115130044 C T DENND2C Missense_Mutation p.E907K 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.42 tolerated(0.49) benign(0.001) TCGA-D3-A8GI-06 1 115223071 115223071 C T AMPD1 Silent p.E225E 0.43 TCGA-D3-A8GI-06 1 115258748 115258748 C T NRAS Missense_Mutation p.G12S 0.36 deleterious(0.03) benign(0.129) TCGA-D3-A8GI-06 1 115829023 115829023 C T NGF Missense_Mutation p.E132K 0.62 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 116311087 116311087 G A CASQ2 Missense_Mutation p.P26S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 116569575 116569575 C T SLC22A15 Silent p.F220F 0.47 TCGA-D3-A8GI-06 1 117142579 117142579 G A IGSF3 Silent p.I691I 0.19 TCGA-D3-A8GI-06 1 11721191 11721191 C T FBXO44 Missense_Mutation p.S210F 0.32 deleterious(0.04) possibly_damaging(0.84) TCGA-D3-A8GI-06 1 117311398 117311398 C T CD2 Missense_Mutation p.S350F 0.38 deleterious(0.02) possibly_damaging(0.723) TCGA-D3-A8GI-06 1 117641513 117641513 G A TTF2 Missense_Mutation p.D1110N 0.35 tolerated(0.05) probably_damaging(0.925) TCGA-D3-A8GI-06 1 117644078 117644078 C T TTF2 Silent p.L1141L 0.44 TCGA-D3-A8GI-06 1 118530457 118530457 C T SPAG17 Missense_Mutation p.R1890K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 1 118539095 118539095 C T SPAG17 Missense_Mutation p.G1651R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 118624059 118624059 G A SPAG17 Nonsense_Mutation p.Q657* 0.42 TCGA-D3-A8GI-06 1 118629309 118629309 C T SPAG17 Silent p.K532K 0.42 TCGA-D3-A8GI-06 1 118658002 118658002 C T SPAG17 Silent p.G126G 0.46 TCGA-D3-A8GI-06 1 11889289 11889289 C T CLCN6 Silent p.T386T 0.38 TCGA-D3-A8GI-06 1 119427976 119427976 G A TBX15 Silent p.L290L 0.41 TCGA-D3-A8GI-06 1 119619088 119619088 G A WARS2 Missense_Mutation p.S78F 0.44 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GI-06 1 119964905 119964905 C T HSD3B2 Missense_Mutation p.H261Y 0.40 tolerated(0.05) benign(0.33) TCGA-D3-A8GI-06 1 120056840 120056840 G A HSD3B1 Missense_Mutation p.A232T 0.51 deleterious(0.01) possibly_damaging(0.539) TCGA-D3-A8GI-06 1 120293450 120293450 C T HMGCS2 Missense_Mutation p.R501Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 120302568 120302568 T A HMGCS2 Missense_Mutation p.S202C 0.31 deleterious(0) benign(0.404) TCGA-D3-A8GI-06 1 120458765 120458765 G A NOTCH2 Missense_Mutation p.H2194Y 0.44 tolerated(0.08) benign(0.355) TCGA-D3-A8GI-06 1 120854678 120854678 T A FAM72B 3'UTR 0.38 TCGA-D3-A8GI-06 1 120927113 120927113 C T FCGR1B 3'UTR 0.37 TCGA-D3-A8GI-06 1 12144521 12144521 G A TNFRSF8 Missense_Mutation p.D22N 0.42 deleterious(0.03) benign(0.414) TCGA-D3-A8GI-06 1 1230920 1230920 G A ACAP3 Missense_Mutation p.R574C 0.45 deleterious(0) benign(0.258) TCGA-D3-A8GI-06 1 12726323 12726323 C T AADACL4 Silent p.I267I 0.36 TCGA-D3-A8GI-06 1 1273687 1273687 G A DVL1 Missense_Mutation p.S465F 0.40 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GI-06 1 12815682 12815682 C T C1orf158 Silent p.S48S 0.78 TCGA-D3-A8GI-06 1 12835217 12835217 G A PRAMEF12 Silent p.L69L 0.49 TCGA-D3-A8GI-06 1 12853579 12853579 C T PRAMEF1 Missense_Mutation p.S68L 0.33 tolerated(0.06) benign(0.003) TCGA-D3-A8GI-06 1 12885072 12885072 C T PRAMEF11 Missense_Mutation p.G347R 0.33 tolerated(0.09) probably_damaging(0.997) TCGA-D3-A8GI-06 1 12887496 12887496 C T PRAMEF11 Missense_Mutation p.D121N 0.43 deleterious(0.04) possibly_damaging(0.448) TCGA-D3-A8GI-06 1 12887683 12887683 C T PRAMEF11 Nonsense_Mutation p.W58* 0.38 TCGA-D3-A8GI-06 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.06 tolerated(0.05) benign(0.028) TCGA-D3-A8GI-06 1 12920014 12920014 G A PRAMEF2 Missense_Mutation p.E252K 0.47 tolerated(0.29) benign(0.07) TCGA-D3-A8GI-06 1 12943102 12943102 G A PRAMEF4 Silent p.F38F 0.23 TCGA-D3-A8GI-06 1 12954468 12954468 A T PRAMEF10 Missense_Mutation p.L272H 0.26 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A8GI-06 1 12955409 12955409 G A PRAMEF10 Silent p.A90A 0.42 TCGA-D3-A8GI-06 1 12955479 12955479 C T PRAMEF10 Missense_Mutation p.G67E 0.46 deleterious(0.02) possibly_damaging(0.901) TCGA-D3-A8GI-06 1 13036565 13036565 G A PRAMEF22 Missense_Mutation p.E213K 0.27 deleterious(0.04) possibly_damaging(0.686) TCGA-D3-A8GI-06 1 1341035 1341035 C T MRPL20 Intron 0.52 TCGA-D3-A8GI-06 1 13669060 13669060 G A PRAMEF14 Missense_Mutation p.R424C 0.33 tolerated(0.19) benign(0.443) TCGA-D3-A8GI-06 1 142713771 142713771 C T RP11-417J8.6 RNA 0.18 TCGA-D3-A8GI-06 1 142713786 142713786 C T RP11-417J8.6 RNA 0.18 TCGA-D3-A8GI-06 1 1431164 1431164 G A ATAD3B Silent p.R638R 0.22 TCGA-D3-A8GI-06 1 144863423 144863423 G A PDE4DIP Missense_Mutation p.L1994F 0.23 deleterious(0.04) benign(0.106) TCGA-D3-A8GI-06 1 144864148 144864148 C T PDE4DIP Missense_Mutation p.E1983K 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A8GI-06 1 144917521 144917521 G A PDE4DIP Missense_Mutation p.S528F 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 145015874 145015874 G A RP11-326G21.1 5'Flank 0.09 TCGA-D3-A8GI-06 1 145326026 145326026 C T NBPF10 Missense_Mutation p.P1300L 0.23 probably_damaging(0.997) TCGA-D3-A8GI-06 1 145415381 145415381 G A HFE2 Missense_Mutation p.G67E 0.48 tolerated_low_confidence(0.23) benign(0.044) TCGA-D3-A8GI-06 1 145416848 145416848 C T HFE2 Missense_Mutation p.P398L 0.36 deleterious(0) benign(0.026) TCGA-D3-A8GI-06 1 145474090 145474090 C T ANKRD34A Silent p.A254A 0.43 TCGA-D3-A8GI-06 1 145534935 145534935 G A ITGA10 Missense_Mutation p.R613Q 0.32 tolerated(0.36) benign(0.228) TCGA-D3-A8GI-06 1 145555767 145555767 C T ANKRD35 Silent p.L39L 0.44 TCGA-D3-A8GI-06 1 145562018 145562018 G A ANKRD35 Missense_Mutation p.G569E 0.40 tolerated(0.13) benign(0.428) TCGA-D3-A8GI-06 1 145562951 145562951 G A ANKRD35 Missense_Mutation p.R880Q 0.35 deleterious(0.04) possibly_damaging(0.746) TCGA-D3-A8GI-06 1 146420128 146420128 C T NBPF12 Missense_Mutation p.P961S 0.45 probably_damaging(0.944) TCGA-D3-A8GI-06 1 147380438 147380438 G A GJA8 Missense_Mutation p.G119E 0.45 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 1 149763061 149763061 G A FCGR1A Silent p.Q371Q 0.26 TCGA-D3-A8GI-06 1 149783690 149783690 C T HIST2H2BF Missense_Mutation p.M63I 0.36 deleterious_low_confidence(0.03) benign(0.4) TCGA-D3-A8GI-06 1 149877335 149877335 C T SV2A Intron 0.46 TCGA-D3-A8GI-06 1 149884963 149884963 C T SV2A Missense_Mutation p.E144K 0.33 deleterious(0.01) benign(0.211) TCGA-D3-A8GI-06 1 150049809 150049809 C T VPS45 Silent p.L213L 0.40 TCGA-D3-A8GI-06 1 150902578 150902578 C T SETDB1 Silent p.V132V 0.38 TCGA-D3-A8GI-06 1 151108939 151108939 C T SEMA6C Missense_Mutation p.R364K 0.37 tolerated(0.76) benign(0.04) TCGA-D3-A8GI-06 1 151682265 151682265 C T CELF3 Missense_Mutation p.M77I 0.45 deleterious(0) benign(0.137) TCGA-D3-A8GI-06 1 151740654 151740654 C T OAZ3 Missense_Mutation p.R97C 0.31 deleterious(0.03) possibly_damaging(0.526) TCGA-D3-A8GI-06 1 151787876 151787876 C T RORC Silent p.K108K 0.40 TCGA-D3-A8GI-06 1 151804232 151804232 C T RORC Silent p.R3R 0.38 TCGA-D3-A8GI-06 1 152059415 152059415 C T TCHHL1 Missense_Mutation p.R248K 0.36 tolerated(0.47) benign(0.032) TCGA-D3-A8GI-06 1 152080340 152080340 C T TCHH Missense_Mutation p.E1785K 0.44 unknown(0) TCGA-D3-A8GI-06 1 152083411 152083411 T C TCHH Missense_Mutation p.E761G 0.49 unknown(0) TCGA-D3-A8GI-06 1 152127246 152127246 C T RPTN Missense_Mutation p.E777K 0.44 deleterious(0.02) benign(0.063) TCGA-D3-A8GI-06 1 152192407 152192407 C T HRNR Silent p.G566G 0.42 TCGA-D3-A8GI-06 1 152192498 152192498 C T HRNR Missense_Mutation p.G536E 0.35 unknown(0) TCGA-D3-A8GI-06 1 152276032 152276032 G A FLG Missense_Mutation p.S3777L 0.43 unknown(0) TCGA-D3-A8GI-06 1 152277059 152277059 G A FLG Missense_Mutation p.R3435C 0.43 unknown(0) TCGA-D3-A8GI-06 1 152278822 152278822 G A FLG Missense_Mutation p.S2847L 0.23 benign(0.092) TCGA-D3-A8GI-06 1 152279576 152279576 G A FLG Nonsense_Mutation p.Q2596* 0.34 TCGA-D3-A8GI-06 1 152279708 152279708 C T FLG Missense_Mutation p.G2552R 0.40 probably_damaging(0.977) TCGA-D3-A8GI-06 1 152279836 152279836 C T FLG Missense_Mutation p.G2509E 0.46 probably_damaging(0.999) TCGA-D3-A8GI-06 1 152281004 152281004 C T FLG Missense_Mutation p.D2120N 0.21 possibly_damaging(0.539) TCGA-D3-A8GI-06 1 152282379 152282379 G A FLG Silent p.S1661S 0.35 TCGA-D3-A8GI-06 1 152286700 152286700 C T FLG Missense_Mutation p.G221E 0.42 benign(0.13) TCGA-D3-A8GI-06 1 152324074 152324074 G A FLG2 Missense_Mutation p.S2063F 0.47 possibly_damaging(0.831) TCGA-D3-A8GI-06 1 152326703 152326703 C T FLG2 Missense_Mutation p.D1187N 0.38 unknown(0) TCGA-D3-A8GI-06 1 152329679 152329679 C T FLG2 Missense_Mutation p.D195N 0.46 unknown(0) TCGA-D3-A8GI-06 1 152384647 152384647 C T CRNN Silent p.T21T 0.47 TCGA-D3-A8GI-06 1 152732043 152732043 C T KPRP 5'UTR 0.43 TCGA-D3-A8GI-06 1 152732859 152732859 C T KPRP Silent p.F265F 0.38 TCGA-D3-A8GI-06 1 152733053 152733053 C T KPRP Missense_Mutation p.S330F 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 1 152759780 152759780 C T LCE1E Missense_Mutation p.S2F 0.46 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 1 152800171 152800171 C A LCE1A Missense_Mutation p.H75N 0.52 tolerated_low_confidence(0.47) unknown(0) TCGA-D3-A8GI-06 1 152883942 152883942 C T IVL Missense_Mutation p.P557S 0.43 tolerated_low_confidence(0.38) unknown(0) TCGA-D3-A8GI-06 1 152944435 152944435 G A SPRR4 Silent p.V23V 0.48 TCGA-D3-A8GI-06 1 152944539 152944539 G A SPRR4 Missense_Mutation p.G58D 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GI-06 1 152976063 152976063 C T SPRR3 3'UTR 0.44 TCGA-D3-A8GI-06 1 153029122 153029122 C T SPRR2A Silent p.P30P 0.40 TCGA-D3-A8GI-06 1 153065995 153065995 G A SPRR2E 3'UTR 0.31 TCGA-D3-A8GI-06 1 153271605 153271605 G A PGLYRP3 Silent p.F277F 0.41 TCGA-D3-A8GI-06 1 153274915 153274915 T C PGLYRP3 Missense_Mutation p.D233G 0.53 tolerated(0.09) possibly_damaging(0.843) TCGA-D3-A8GI-06 1 153346191 153346191 C T S100A12 3'UTR 0.53 TCGA-D3-A8GI-06 1 153580040 153580040 G A S100A16 Silent p.I94I 0.44 TCGA-D3-A8GI-06 1 153655966 153655966 G A NPR1 Missense_Mutation p.E460K 0.45 deleterious(0.03) benign(0.011) TCGA-D3-A8GI-06 1 153752485 153752485 C T SLC27A3 3'UTR 0.47 TCGA-D3-A8GI-06 1 153782668 153782668 G A GATAD2B Silent p.I589I 0.47 TCGA-D3-A8GI-06 1 154140348 154140348 G C TPM3 3'UTR 0.52 TCGA-D3-A8GI-06 1 154179862 154179862 G A C1orf43 3'UTR 0.42 TCGA-D3-A8GI-06 1 154179863 154179863 G A C1orf43 3'UTR 0.42 TCGA-D3-A8GI-06 1 154303574 154303574 G A ATP8B2 Silent p.L118L 0.38 TCGA-D3-A8GI-06 1 154680633 154680633 G A KCNN3 Missense_Mutation p.S672F 0.45 deleterious(0.02) possibly_damaging(0.568) TCGA-D3-A8GI-06 1 154918546 154918546 C T PBXIP1 Missense_Mutation p.R535Q 0.44 tolerated(0.24) benign(0.011) TCGA-D3-A8GI-06 1 154942916 154942916 G A SHC1 Silent p.T29T 0.33 TCGA-D3-A8GI-06 1 155156483 155156483 G A TRIM46 Silent p.R699R 0.38 TCGA-D3-A8GI-06 1 155252292 155252292 C T HCN3 Silent p.S123S 0.46 TCGA-D3-A8GI-06 1 155452144 155452144 G A ASH1L Missense_Mutation p.P173S 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.697) TCGA-D3-A8GI-06 1 155640244 155640244 G A YY1AP1 Missense_Mutation p.P337S 0.36 tolerated(0.08) benign(0.086) TCGA-D3-A8GI-06 1 155644834 155644834 G A YY1AP1 Silent p.L264L 0.42 TCGA-D3-A8GI-06 1 155695765 155695765 C T DAP3 Missense_Mutation p.H143Y 0.36 deleterious(0) benign(0.396) TCGA-D3-A8GI-06 1 1560265 1560265 G A MIB2 Silent p.E285E 0.53 TCGA-D3-A8GI-06 1 156238106 156238106 G A SMG5 Missense_Mutation p.R272W 0.34 deleterious(0) possibly_damaging(0.809) TCGA-D3-A8GI-06 1 156314453 156314453 C T TSACC Silent p.S39S 0.31 TCGA-D3-A8GI-06 1 156374372 156374372 G A C1orf61 Missense_Mutation p.H149Y 0.44 tolerated_low_confidence(1) benign(0.094) TCGA-D3-A8GI-06 1 156437891 156437891 C T MEF2D Missense_Mutation p.R483Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 1 156437918 156437918 G A MEF2D Missense_Mutation p.A474V 0.36 tolerated(0.08) benign(0.176) TCGA-D3-A8GI-06 1 156504985 156504985 G A IQGAP3 Silent p.F1159F 0.31 TCGA-D3-A8GI-06 1 156622462 156622462 C T BCAN Silent p.L574L 0.42 TCGA-D3-A8GI-06 1 156639925 156639925 C T NES Missense_Mutation p.G1352E 0.43 tolerated_low_confidence(1) benign(0.003) TCGA-D3-A8GI-06 1 156645035 156645035 G A NES Missense_Mutation p.S294F 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 156752095 156752095 C T PRCC Missense_Mutation p.P164S 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A8GI-06 1 156812803 156812803 T C INSRR Missense_Mutation p.H1040R 0.33 deleterious(0) benign(0.333) TCGA-D3-A8GI-06 1 156814385 156814385 C T INSRR Missense_Mutation p.R869Q 0.41 tolerated(0.71) probably_damaging(0.91) TCGA-D3-A8GI-06 1 156846320 156846320 G A NTRK1 Missense_Mutation p.M587I 0.59 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GI-06 1 156876469 156876469 C T PEAR1 Silent p.P147P 0.44 TCGA-D3-A8GI-06 1 156884464 156884464 C T PEAR1 Silent p.P996P 0.43 TCGA-D3-A8GI-06 1 157062738 157062738 C T ETV3L Silent p.G263G 0.41 TCGA-D3-A8GI-06 1 157103997 157103997 G A ETV3 Missense_Mutation p.L103F 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 157746837 157746837 G A FCRL2 Silent p.I9I 0.47 TCGA-D3-A8GI-06 1 157771841 157771841 C T FCRL1 Silent p.G250G 0.33 TCGA-D3-A8GI-06 1 158224934 158224934 G A CD1A Nonsense_Mutation p.W40* 0.46 TCGA-D3-A8GI-06 1 158226698 158226698 G A CD1A Missense_Mutation p.E243K 0.33 tolerated(0.06) possibly_damaging(0.859) TCGA-D3-A8GI-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.39 deleterious(0.05) benign(0.049) TCGA-D3-A8GI-06 1 158325977 158325977 G A CD1E Intron 0.60 TCGA-D3-A8GI-06 1 158326821 158326821 C T CD1E 3'Flank 0.40 TCGA-D3-A8GI-06 1 158369023 158369023 G A OR10T2 Silent p.I78I 0.36 TCGA-D3-A8GI-06 1 158436035 158436035 C T OR10K1 Silent p.I228I 0.34 TCGA-D3-A8GI-06 1 158450549 158450549 G A OR10R2 Silent p.V294V 0.49 TCGA-D3-A8GI-06 1 158517200 158517200 C T OR6Y1 Silent p.R232R 0.45 TCGA-D3-A8GI-06 1 158576822 158576822 G A OR10Z1 Silent p.R198R 0.50 TCGA-D3-A8GI-06 1 158576864 158576864 C T OR10Z1 Silent p.F212F 0.29 TCGA-D3-A8GI-06 1 158584062 158584062 C T SPTA1 Missense_Mutation p.E2275K 0.47 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 1 158612606 158612606 G A SPTA1 Nonsense_Mutation p.Q1535* 0.33 TCGA-D3-A8GI-06 1 158639218 158639218 C T SPTA1 Missense_Mutation p.A605T 0.28 tolerated(0.07) benign(0.311) TCGA-D3-A8GI-06 1 159033458 159033458 C T AIM2 Missense_Mutation p.E275K 0.44 tolerated(0.24) benign(0.384) TCGA-D3-A8GI-06 1 159166700 159166700 G A CADM3 Missense_Mutation p.E302K 0.39 tolerated(0.78) benign(0.009) TCGA-D3-A8GI-06 1 159169638 159169638 C T CADM3 Silent p.F384F 0.50 TCGA-D3-A8GI-06 1 159275977 159275977 G A FCER1A Silent p.T177T 0.39 TCGA-D3-A8GI-06 1 159276004 159276004 G A FCER1A Silent p.E186E 0.38 TCGA-D3-A8GI-06 1 159277610 159277610 G A FCER1A Missense_Mutation p.G221E 0.34 deleterious(0.02) probably_damaging(0.915) TCGA-D3-A8GI-06 1 159277762 159277762 C T FCER1A 3'UTR 0.64 TCGA-D3-A8GI-06 1 159284064 159284064 T C OR10J3 Missense_Mutation p.N129S 0.50 deleterious(0.04) benign(0.033) TCGA-D3-A8GI-06 1 159284433 159284433 G A OR10J3 Missense_Mutation p.S6F 0.36 tolerated(0.77) benign(0.001) TCGA-D3-A8GI-06 1 159410381 159410381 G A OR10J1 Missense_Mutation p.R278K 0.30 tolerated(0.95) benign(0.004) TCGA-D3-A8GI-06 1 159922179 159922179 G A SLAMF9 Silent p.F179F 0.47 TCGA-D3-A8GI-06 1 160098776 160098776 C T ATP1A2 Missense_Mutation p.T408I 0.46 tolerated(0.19) benign(0.08) TCGA-D3-A8GI-06 1 160105706 160105706 C T ATP1A2 Silent p.L788L 0.49 TCGA-D3-A8GI-06 1 160164839 160164839 G A CASQ1 Missense_Mutation p.R168Q 0.43 tolerated(0.51) benign(0.048) TCGA-D3-A8GI-06 1 160535465 160535465 G A CD84 Silent p.F39F 0.59 TCGA-D3-A8GI-06 1 160721990 160721990 G A SLAMF7 Silent p.K296K 0.34 TCGA-D3-A8GI-06 1 160783554 160783554 G A LY9 Missense_Mutation p.E195K 0.44 tolerated(0.06) benign(0.388) TCGA-D3-A8GI-06 1 160851762 160851762 C T ITLN1 Silent p.T130T 0.35 TCGA-D3-A8GI-06 1 161023148 161023148 G A ARHGAP30 Silent p.F188F 0.49 TCGA-D3-A8GI-06 1 161026272 161026272 A T ARHGAP30 Missense_Mutation p.L84H 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 161192746 161192746 C T APOA2 Missense_Mutation p.M49I 0.41 tolerated(0.41) benign(0.009) TCGA-D3-A8GI-06 1 161196272 161196272 G A TOMM40L 5'UTR 0.39 TCGA-D3-A8GI-06 1 161205715 161205715 C T NR1I3 Missense_Mutation p.E54K 0.40 tolerated(0.4) benign(0.012) TCGA-D3-A8GI-06 1 161514616 161514616 A T FCGR3A Missense_Mutation p.F187Y 0.49 tolerated(1) probably_damaging(0.97) TCGA-D3-A8GI-06 1 161681261 161681261 C T FCRLA Nonsense_Mutation p.Q189* 0.33 TCGA-D3-A8GI-06 1 162343739 162343739 G A C1orf111 3'UTR 0.35 TCGA-D3-A8GI-06 1 162353431 162353431 C T C1orf226 Silent p.L302L 0.27 TCGA-D3-A8GI-06 1 16258099 16258099 C T SPEN Silent p.N1788N 0.29 TCGA-D3-A8GI-06 1 16258693 16258693 C T SPEN Silent p.S1986S 0.49 TCGA-D3-A8GI-06 1 16261124 16261124 C T SPEN Missense_Mutation p.P2797S 0.43 benign(0.081) TCGA-D3-A8GI-06 1 162824664 162824664 G A C1orf110 Missense_Mutation p.S267F 0.37 deleterious(0) probably_damaging(0.919) TCGA-D3-A8GI-06 1 164761963 164761963 G A PBX1 Silent p.E166E 0.52 TCGA-D3-A8GI-06 1 165173086 165173086 G A LMX1A 3'UTR 0.36 TCGA-D3-A8GI-06 1 165623585 165623585 G A MGST3 Missense_Mutation p.G107R 0.34 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 1 165712409 165712409 G A TMCO1 Nonsense_Mutation p.R206* 0.40 TCGA-D3-A8GI-06 1 166891855 166891855 C T ILDR2 Missense_Mutation p.E396K 0.42 tolerated(0.12) possibly_damaging(0.593) TCGA-D3-A8GI-06 1 166958589 166958589 C T MAEL 5'UTR 0.36 TCGA-D3-A8GI-06 1 166987099 166987099 G A MAEL Missense_Mutation p.G315E 0.47 deleterious(0.05) possibly_damaging(0.897) TCGA-D3-A8GI-06 1 167096042 167096042 G A DUSP27 Silent p.K558K 0.39 TCGA-D3-A8GI-06 1 16736219 16736219 C T SPATA21 Missense_Mutation p.G155E 0.62 deleterious(0.04) possibly_damaging(0.489) TCGA-D3-A8GI-06 1 16736220 16736220 C T SPATA21 Missense_Mutation p.G155R 0.60 deleterious(0.04) possibly_damaging(0.59) TCGA-D3-A8GI-06 1 167742535 167742535 C T MPZL1 Missense_Mutation p.L179F 0.50 tolerated(0.14) benign(0.03) TCGA-D3-A8GI-06 1 167798562 167798562 G A ADCY10 Silent p.A1231A 0.39 TCGA-D3-A8GI-06 1 167802322 167802322 G A ADCY10 Missense_Mutation p.P1166S 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 16918743 16918743 G A NBPF1 5'UTR 0.16 TCGA-D3-A8GI-06 1 169390662 169390662 G A CCDC181 Missense_Mutation p.S336F 0.38 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GI-06 1 169511105 169511105 C T F5 Missense_Mutation p.E1075K 0.44 tolerated(0.16) benign(0.014) TCGA-D3-A8GI-06 1 169529979 169529979 G A F5 Silent p.F133F 0.40 TCGA-D3-A8GI-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.48 deleterious(0.02) benign(0.036) TCGA-D3-A8GI-06 1 169677843 169677843 C T SELL Missense_Mutation p.D76N 0.53 tolerated(0.1) probably_damaging(1) TCGA-D3-A8GI-06 1 169695908 169695908 G A SELE Missense_Mutation p.S562F 0.31 deleterious(0) possibly_damaging(0.736) TCGA-D3-A8GI-06 1 169698428 169698428 G A SELE Missense_Mutation p.S330F 0.56 tolerated(0.08) benign(0.111) TCGA-D3-A8GI-06 1 169698762 169698762 G A SELE Silent p.F256F 0.40 TCGA-D3-A8GI-06 1 169699625 169699625 G A SELE Silent p.T221T 0.52 TCGA-D3-A8GI-06 1 169798659 169798659 C T C1orf112 Intron 0.28 TCGA-D3-A8GI-06 1 169822003 169822003 G A C1orf112 Missense_Mutation p.G813R 0.40 tolerated(0.71) benign(0.012) TCGA-D3-A8GI-06 1 170965721 170965721 G A MROH9 Missense_Mutation p.E471K 0.37 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 1 171083388 171083388 T A FMO3 Missense_Mutation p.F357I 0.38 deleterious(0.02) benign(0.139) TCGA-D3-A8GI-06 1 171086584 171086584 C T FMO3 3'UTR 0.48 TCGA-D3-A8GI-06 1 171252314 171252314 G A FMO1 Missense_Mutation p.M405I 0.46 deleterious(0.02) possibly_damaging(0.73) TCGA-D3-A8GI-06 1 171254424 171254424 C T FMO1 Missense_Mutation p.P447L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 171300855 171300855 C T FMO4 Silent p.V187V 0.39 TCGA-D3-A8GI-06 1 171306499 171306499 C T FMO4 Silent p.L395L 0.43 TCGA-D3-A8GI-06 1 171605414 171605414 C T MYOC Nonsense_Mutation p.W389* 0.47 TCGA-D3-A8GI-06 1 171607757 171607757 C T MYOC Missense_Mutation p.R237K 0.41 tolerated(0.12) benign(0.021) TCGA-D3-A8GI-06 1 171621205 171621205 C T MYOC Missense_Mutation p.G183S 0.33 tolerated(0.44) benign(0.009) TCGA-D3-A8GI-06 1 172357742 172357742 G A DNM3 Missense_Mutation p.R772K 0.57 tolerated_low_confidence(0.12) benign(0.017) TCGA-D3-A8GI-06 1 172411088 172411088 G A PIGC Silent p.P225P 0.51 TCGA-D3-A8GI-06 1 172417620 172417620 G A C1orf105 Silent p.K49K 0.37 TCGA-D3-A8GI-06 1 172634997 172634997 G A FASLG Missense_Mutation p.M229I 0.45 tolerated(0.25) benign(0.002) TCGA-D3-A8GI-06 1 173504994 173504994 C T SLC9C2 Missense_Mutation p.E584K 0.31 tolerated(0.59) benign(0.123) TCGA-D3-A8GI-06 1 173542334 173542334 C T SLC9C2 Missense_Mutation p.V345M 0.41 deleterious(0.03) possibly_damaging(0.544) TCGA-D3-A8GI-06 1 173552678 173552678 G A SLC9C2 Missense_Mutation p.R203W 0.33 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GI-06 1 173556886 173556886 C T SLC9C2 Nonsense_Mutation p.W147* 0.44 TCGA-D3-A8GI-06 1 173596219 173596219 G A ANKRD45 Silent p.L192L 0.42 TCGA-D3-A8GI-06 1 17402253 17402253 G A PADI2 Missense_Mutation p.P459L 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GI-06 1 174188380 174188380 C A RABGAP1L Missense_Mutation p.P29T 0.43 tolerated(0.77) benign(0.001) TCGA-D3-A8GI-06 1 174418222 174418222 C T GPR52 Missense_Mutation p.R325W 0.41 deleterious(0) possibly_damaging(0.902) TCGA-D3-A8GI-06 1 175086118 175086118 G A TNN Silent p.E721E 0.29 TCGA-D3-A8GI-06 1 175086146 175086146 G A TNN Missense_Mutation p.V731M 0.57 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GI-06 1 175334157 175334157 G A TNR Missense_Mutation p.S859F 0.53 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A8GI-06 1 175355168 175355168 C T TNR Missense_Mutation p.E593K 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A8GI-06 1 175355234 175355234 C T TNR Missense_Mutation p.E571K 0.36 tolerated(0.17) benign(0.096) TCGA-D3-A8GI-06 1 175360538 175360538 C T TNR Missense_Mutation p.D465N 0.27 tolerated(0.4) benign(0.426) TCGA-D3-A8GI-06 1 175362937 175362937 C T TNR Nonsense_Mutation p.W445* 0.40 TCGA-D3-A8GI-06 1 17555264 17555264 C T PADI1 Missense_Mutation p.S266F 0.53 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GI-06 1 17557156 17557156 C T PADI1 Silent p.F381F 0.35 TCGA-D3-A8GI-06 1 17588638 17588638 C T PADI3 Missense_Mutation p.S95F 0.50 deleterious(0.03) possibly_damaging(0.812) TCGA-D3-A8GI-06 1 176525795 176525795 G A PAPPA2 Missense_Mutation p.E113K 0.44 tolerated_low_confidence(0.59) benign(0.002) TCGA-D3-A8GI-06 1 176526198 176526198 C T PAPPA2 Missense_Mutation p.S247F 0.32 tolerated(0.05) benign(0.116) TCGA-D3-A8GI-06 1 176563833 176563833 A T PAPPA2 Missense_Mutation p.T365S 0.34 deleterious(0.04) possibly_damaging(0.825) TCGA-D3-A8GI-06 1 176564664 176564664 G A PAPPA2 Missense_Mutation p.G642R 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 176564665 176564665 G A PAPPA2 Missense_Mutation p.G642E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 176734885 176734885 T A PAPPA2 Missense_Mutation p.I1412K 0.35 tolerated(0.54) benign(0) TCGA-D3-A8GI-06 1 17682570 17682570 C T PADI4 Missense_Mutation p.S468F 0.41 tolerated(0.73) benign(0.003) TCGA-D3-A8GI-06 1 176993753 176993753 G A ASTN1 Silent p.I412I 0.52 TCGA-D3-A8GI-06 1 177000013 177000013 T C ASTN1 Missense_Mutation p.N314S 0.43 tolerated_low_confidence(0.37) benign(0.01) TCGA-D3-A8GI-06 1 177242630 177242630 G A BRINP2 Missense_Mutation p.E226K 0.53 deleterious(0.01) probably_damaging(0.96) TCGA-D3-A8GI-06 1 177902671 177902671 G A SEC16B Missense_Mutation p.P891L 0.50 tolerated(0.7) benign(0.003) TCGA-D3-A8GI-06 1 177906521 177906521 G A SEC16B Silent p.P777P 0.46 TCGA-D3-A8GI-06 1 178411840 178411840 C T RASAL2 Missense_Mutation p.R320C 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GI-06 1 178427164 178427164 C G RASAL2 Missense_Mutation p.Q913E 0.33 tolerated(0.06) probably_damaging(0.985) TCGA-D3-A8GI-06 1 178489507 178489507 G A TEX35 Missense_Mutation p.E93K 0.41 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GI-06 1 178490054 178490054 G A TEX35 Intron 0.46 TCGA-D3-A8GI-06 1 179520167 179520167 G A NPHS2 3'UTR 0.50 TCGA-D3-A8GI-06 1 179603710 179603710 G A TDRD5 Silent p.E415E 0.40 TCGA-D3-A8GI-06 1 179638517 179638517 C T TDRD5 Silent p.S946S 0.45 TCGA-D3-A8GI-06 1 179783027 179783027 C T FAM163A Silent p.A69A 0.37 TCGA-D3-A8GI-06 1 179961288 179961288 C T CEP350 Silent p.A109A 0.48 TCGA-D3-A8GI-06 1 180061907 180061907 C T CEP350 Silent p.L2223L 0.83 TCGA-D3-A8GI-06 1 180794045 180794045 C T XPR1 Missense_Mutation p.P307L 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 1 181480578 181480578 C T CACNA1E Silent p.F148F 0.45 TCGA-D3-A8GI-06 1 18152912 18152912 A G ACTL8 Silent p.R333R 0.46 TCGA-D3-A8GI-06 1 181689443 181689443 C T CACNA1E Missense_Mutation p.A618V 0.41 deleterious(0) possibly_damaging(0.787) TCGA-D3-A8GI-06 1 181767935 181767935 C T CACNA1E Silent p.L2303L 0.29 TCGA-D3-A8GI-06 1 182369652 182369652 C T TEDDM1 5'UTR 0.56 TCGA-D3-A8GI-06 1 182909558 182909558 C T SHCBP1L Missense_Mutation p.E226K 0.37 tolerated(0.19) probably_damaging(0.997) TCGA-D3-A8GI-06 1 183072720 183072720 G A LAMC1 Missense_Mutation p.E226K 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 183197520 183197520 G A LAMC2 Missense_Mutation p.E494K 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 183711396 183711396 G A RGL1 Missense_Mutation p.R35Q 0.43 tolerated(0.18) benign(0.001) TCGA-D3-A8GI-06 1 184764571 184764571 G A FAM129A Missense_Mutation p.P776L 0.37 tolerated_low_confidence(0.07) benign(0.009) TCGA-D3-A8GI-06 1 1848599 1848599 G A CALML6 Missense_Mutation p.M171I 0.43 tolerated(0.07) possibly_damaging(0.557) TCGA-D3-A8GI-06 1 186275689 186275689 A G PRG4 Missense_Mutation p.K280E 0.43 benign(0.222) TCGA-D3-A8GI-06 1 186946725 186946725 G A PLA2G4A Missense_Mutation p.E589K 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 1 18808750 18808750 C T KLHDC7A Silent p.A425A 0.38 TCGA-D3-A8GI-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.34 tolerated(0.08) benign(0.001) TCGA-D3-A8GI-06 1 190234152 190234152 C T BRINP3 Missense_Mutation p.R154Q 0.48 tolerated(0.21) benign(0.009) TCGA-D3-A8GI-06 1 190423846 190423846 C T BRINP3 Missense_Mutation p.E59K 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A8GI-06 1 19062210 19062210 G A PAX7 Missense_Mutation p.D414N 0.47 deleterious_low_confidence(0) benign(0.141) TCGA-D3-A8GI-06 1 19166824 19166824 G A TAS1R2 Missense_Mutation p.R597C 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 192150469 192150469 G A RGS18 Missense_Mutation p.E111K 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 192150586 192150586 G A RGS18 Missense_Mutation p.E150K 0.44 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GI-06 1 19524488 19524488 G A UBR4 Missense_Mutation p.T235I 0.40 benign(0.003) TCGA-D3-A8GI-06 1 19612734 19612734 T C AKR7A3 Missense_Mutation p.D116G 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A8GI-06 1 19612735 19612735 C T AKR7A3 Missense_Mutation p.D116N 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 196300327 196300327 G A KCNT2 Missense_Mutation p.L688F 0.37 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GI-06 1 196448364 196448364 G A KCNT2 Missense_Mutation p.S110L 0.43 tolerated(0.56) benign(0) TCGA-D3-A8GI-06 1 196451500 196451500 G A KCNT2 Silent p.I95I 0.29 TCGA-D3-A8GI-06 1 196461446 196461446 C T KCNT2 Missense_Mutation p.E41K 0.33 deleterious(0.04) probably_damaging(0.952) TCGA-D3-A8GI-06 1 196684750 196684750 A G CFH Missense_Mutation p.N516S 0.33 deleterious(0.03) benign(0) TCGA-D3-A8GI-06 1 196695920 196695920 G A CFH Missense_Mutation p.E696K 0.36 tolerated(0.06) benign(0.273) TCGA-D3-A8GI-06 1 196696009 196696009 G A CFH Missense_Mutation p.M725I 0.36 deleterious(0.05) benign(0.21) TCGA-D3-A8GI-06 1 196716504 196716504 C T CFH 3'UTR 0.25 TCGA-D3-A8GI-06 1 196744012 196744012 C T CFHR3 5'UTR 0.38 TCGA-D3-A8GI-06 1 196748309 196748309 C T CFHR3 Missense_Mutation p.P26S 0.38 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 1 196749071 196749071 G A CFHR3 Missense_Mutation p.G133D 0.29 deleterious(0) benign(0.018) TCGA-D3-A8GI-06 1 196759199 196759199 C T CFHR3 Missense_Mutation p.P213L 0.46 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 196762591 196762591 C T CFHR3 Missense_Mutation p.S314L 0.36 deleterious(0.03) possibly_damaging(0.879) TCGA-D3-A8GI-06 1 196796131 196796131 C T CFHR1 Silent p.S142S 0.46 TCGA-D3-A8GI-06 1 196928210 196928210 G A CFHR2 Silent p.%3D 0.43 TCGA-D3-A8GI-06 1 196952099 196952099 G A CFHR5 Missense_Mutation p.G48E 0.53 tolerated(0.06) probably_damaging(0.964) TCGA-D3-A8GI-06 1 196967388 196967388 C T CFHR5 Silent p.H367H 0.22 TCGA-D3-A8GI-06 1 197008366 197008366 G A F13B 3'UTR 0.42 TCGA-D3-A8GI-06 1 197060025 197060025 G T ASPM Silent p.L3197L 0.39 TCGA-D3-A8GI-06 1 197071871 197071871 A - ASPM Frame_Shift_Del p.V2172Sfs*9 0.33 TCGA-D3-A8GI-06 1 197390859 197390859 C T CRB1 Missense_Mutation p.P634L 0.42 tolerated(0.65) benign(0.098) TCGA-D3-A8GI-06 1 197447110 197447110 G A CRB1 3'UTR 0.71 TCGA-D3-A8GI-06 1 19981682 19981682 C T MINOS1-NBL1 Silent p.S53S 0.48 TCGA-D3-A8GI-06 1 200017299 200017299 G A NR5A2 Splice_Site p.X155_splice 0.36 TCGA-D3-A8GI-06 1 200143285 200143285 G A NR5A2 Missense_Mutation p.D525N 0.37 tolerated(0.08) benign(0.038) TCGA-D3-A8GI-06 1 20027361 20027361 C T TMCO4 Missense_Mutation p.E428K 0.43 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GI-06 1 200817885 200817885 C T CAMSAP2 Missense_Mutation p.P663L 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 200943199 200943199 G A KIF21B 3'UTR 0.69 TCGA-D3-A8GI-06 1 200974487 200974487 G A KIF21B Silent p.A227A 0.54 TCGA-D3-A8GI-06 1 200974798 200974798 G A KIF21B Silent p.L158L 0.44 TCGA-D3-A8GI-06 1 201022715 201022715 C T CACNA1S Missense_Mutation p.D1223N 0.35 tolerated_low_confidence(1) possibly_damaging(0.854) TCGA-D3-A8GI-06 1 201030553 201030553 G A CACNA1S Missense_Mutation p.P1033S 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 201039423 201039423 G A CACNA1S Silent p.F779F 0.33 TCGA-D3-A8GI-06 1 201081385 201081385 G A CACNA1S Missense_Mutation p.P28L 0.42 deleterious(0.02) benign(0.206) TCGA-D3-A8GI-06 1 201190792 201190792 C T IGFN1 Silent p.F3373F 0.44 TCGA-D3-A8GI-06 1 201193965 201193965 G A IGFN1 Silent p.G3483G 0.21 TCGA-D3-A8GI-06 1 201293563 201293563 G C PKP1 Missense_Mutation p.S584T 0.35 tolerated(0.14) benign(0.063) TCGA-D3-A8GI-06 1 201380617 201380617 G A TNNI1 Silent p.F108F 0.38 TCGA-D3-A8GI-06 1 20141581 20141581 T C RNF186 Missense_Mutation p.K5R 0.39 tolerated(0.07) benign(0.003) TCGA-D3-A8GI-06 1 201454483 201454483 G A CSRP1 Nonsense_Mutation p.R145* 0.47 TCGA-D3-A8GI-06 1 201757733 201757733 C T NAV1 Missense_Mutation p.R1045W 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 202096955 202096955 G A GPR37L1 Silent p.V239V 0.36 TCGA-D3-A8GI-06 1 202128539 202128539 G A PTPN7 Missense_Mutation p.H103Y 0.40 tolerated_low_confidence(0.15) benign(0.031) TCGA-D3-A8GI-06 1 202276020 202276020 G A LGR6 Nonsense_Mutation p.W387* 0.48 TCGA-D3-A8GI-06 1 202287295 202287295 G A LGR6 Missense_Mutation p.D622N 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 202574785 202574785 C T SYT2 Missense_Mutation p.S39N 0.37 tolerated(0.22) benign(0.213) TCGA-D3-A8GI-06 1 203466146 203466146 C T OPTC Silent p.P91P 0.37 TCGA-D3-A8GI-06 1 203467886 203467886 C T OPTC Missense_Mutation p.P150S 0.42 deleterious(0.02) benign(0.285) TCGA-D3-A8GI-06 1 203677058 203677058 C T ATP2B4 Silent p.A461A 0.33 TCGA-D3-A8GI-06 1 203743657 203743657 C T LAX1 Nonsense_Mutation p.Q349* 0.49 TCGA-D3-A8GI-06 1 204006655 204006655 G A LINC00303 RNA 0.58 TCGA-D3-A8GI-06 1 204393917 204393917 G A PIK3C2B 3'UTR 0.58 TCGA-D3-A8GI-06 1 20442962 20442962 G A PLA2G2D Missense_Mutation p.P17S 0.36 tolerated(0.05) probably_damaging(0.947) TCGA-D3-A8GI-06 1 204438058 204438058 G A PIK3C2B Silent p.S291S 0.47 TCGA-D3-A8GI-06 1 205028808 205028808 G A CNTN2 Silent p.G265G 0.49 TCGA-D3-A8GI-06 1 205034970 205034970 G T CNTN2 Silent p.G583G 0.40 TCGA-D3-A8GI-06 1 205035586 205035586 G A CNTN2 Missense_Mutation p.G612R 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 205211080 205211080 C T TMCC2 Missense_Mutation p.R219C 0.24 deleterious(0) probably_damaging(0.932) TCGA-D3-A8GI-06 1 205272973 205272973 G A NUAK2 Missense_Mutation p.R498C 0.47 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GI-06 1 205632051 205632051 G A SLC45A3 Silent p.L290L 0.40 TCGA-D3-A8GI-06 1 205632655 205632655 G A SLC45A3 Silent p.F88F 0.72 TCGA-D3-A8GI-06 1 205767936 205767936 G A SLC41A1 Silent p.I235I 0.51 TCGA-D3-A8GI-06 1 205884333 205884333 G A SLC26A9 Intron 0.51 TCGA-D3-A8GI-06 1 205896695 205896695 G A SLC26A9 Silent p.S380S 0.42 TCGA-D3-A8GI-06 1 205900994 205900994 G A SLC26A9 Silent p.I182I 0.37 TCGA-D3-A8GI-06 1 206319160 206319160 C T CTSE Silent p.F95F 0.40 TCGA-D3-A8GI-06 1 206661290 206661290 C T IKBKE Silent p.F552F 0.46 TCGA-D3-A8GI-06 1 206758717 206758717 G A RASSF5 Intron 0.51 TCGA-D3-A8GI-06 1 206811090 206811090 C T DYRK3 Missense_Mutation p.P58L 0.40 tolerated_low_confidence(0.85) benign(0.001) TCGA-D3-A8GI-06 1 206941924 206941924 G A IL10 3'UTR 0.50 TCGA-D3-A8GI-06 1 207108006 207108006 G A PIGR Silent p.F488F 0.43 TCGA-D3-A8GI-06 1 207195525 207195525 G A C1orf116 Silent p.P528P 0.39 TCGA-D3-A8GI-06 1 207245557 207245557 C T PFKFB2 Silent p.F453F 0.45 TCGA-D3-A8GI-06 1 207679379 207679379 C T CR1 Silent p.I84I 0.42 TCGA-D3-A8GI-06 1 207700144 207700144 G A CR1 Silent p.R311R 0.28 TCGA-D3-A8GI-06 1 207758042 207758042 G A CR1 Missense_Mutation p.G1784E 0.34 tolerated(0.22) benign(0.149) TCGA-D3-A8GI-06 1 209803993 209803993 G A LAMB3 Missense_Mutation p.P304S 0.41 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GI-06 1 209805978 209805978 G A LAMB3 Missense_Mutation p.R258C 0.47 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GI-06 1 209806460 209806460 C T LAMB3 Missense_Mutation p.D195N 0.46 tolerated(0.14) benign(0.25) TCGA-D3-A8GI-06 1 209974603 209974603 C T IRF6 Silent p.E52E 0.30 TCGA-D3-A8GI-06 1 21009316 21009316 C T KIF17 Missense_Mutation p.E765K 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GI-06 1 21031118 21031118 C T KIF17 Silent p.A315A 0.30 TCGA-D3-A8GI-06 1 21050727 21050727 C T SH2D5 Silent p.S216S 0.42 TCGA-D3-A8GI-06 1 210796922 210796922 C T HHAT Missense_Mutation p.S434F 0.44 deleterious(0) probably_damaging(0.921) TCGA-D3-A8GI-06 1 212151811 212151811 G A INTS7 Missense_Mutation p.H425Y 0.47 tolerated(0.66) benign(0.005) TCGA-D3-A8GI-06 1 212273795 212273795 C T DTL Missense_Mutation p.S488F 0.44 tolerated(0.32) possibly_damaging(0.707) TCGA-D3-A8GI-06 1 212273796 212273796 C T DTL Silent p.S488S 0.44 TCGA-D3-A8GI-06 1 212534107 212534107 G A PPP2R5A Missense_Mutation p.E486K 0.45 tolerated_low_confidence(1) benign(0.005) TCGA-D3-A8GI-06 1 214705709 214705709 G A PTPN14 Intron 0.30 TCGA-D3-A8GI-06 1 215298051 215298051 G A KCNK2 Missense_Mutation p.G145R 0.32 deleterious(0) possibly_damaging(0.776) TCGA-D3-A8GI-06 1 215298058 215298058 C T KCNK2 Missense_Mutation p.S147F 0.31 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GI-06 1 215408399 215408399 C T KCNK2 Missense_Mutation p.P398S 0.27 tolerated_low_confidence(0.06) benign(0.003) TCGA-D3-A8GI-06 1 215408584 215408584 G A KCNK2 3'UTR 0.35 TCGA-D3-A8GI-06 1 215408643 215408643 G A KCNK2 3'UTR 0.67 TCGA-D3-A8GI-06 1 215807875 215807875 C T USH2A Missense_Mutation p.E5075K 0.30 probably_damaging(0.945) TCGA-D3-A8GI-06 1 215848663 215848663 C T USH2A Missense_Mutation p.G4197E 0.41 benign(0.002) TCGA-D3-A8GI-06 1 216062114 216062114 C T USH2A Missense_Mutation p.G2626E 0.51 possibly_damaging(0.721) TCGA-D3-A8GI-06 1 216074194 216074194 G A USH2A Nonsense_Mutation p.Q2452* 0.53 TCGA-D3-A8GI-06 1 216221982 216221982 C T USH2A Silent p.L2019L 0.40 TCGA-D3-A8GI-06 1 21880527 21880527 C T ALPL 5'UTR 0.38 TCGA-D3-A8GI-06 1 220088596 220088596 G A SLC30A10 3'UTR 0.62 TCGA-D3-A8GI-06 1 220152049 220152049 G A EPRS Missense_Mutation p.P1308S 0.38 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.41 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GI-06 1 220364548 220364548 G T RAB3GAP2 Missense_Mutation p.S450Y 0.45 deleterious(0) possibly_damaging(0.789) TCGA-D3-A8GI-06 1 22148060 22148060 C T LDLRAD2 Missense_Mutation p.S254F 0.31 deleterious(0.01) benign(0.076) TCGA-D3-A8GI-06 1 22179315 22179315 G A HSPG2 Missense_Mutation p.S2201L 0.42 benign(0.407) TCGA-D3-A8GI-06 1 221913079 221913079 G A DUSP10 Missense_Mutation p.P3L 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 222713677 222713677 G A HHIPL2 Silent p.S375S 0.44 TCGA-D3-A8GI-06 1 222717349 222717349 G A HHIPL2 Silent p.F168F 0.45 TCGA-D3-A8GI-06 1 223116190 223116190 G A DISP1 Missense_Mutation p.D9N 0.42 tolerated_low_confidence(0.11) benign(0.357) TCGA-D3-A8GI-06 1 223283715 223283715 G A TLR5 3'UTR 0.51 TCGA-D3-A8GI-06 1 22332214 22332214 C T CELA3A Missense_Mutation p.P96L 0.37 tolerated(0.1) benign(0.287) TCGA-D3-A8GI-06 1 223395407 223395407 G A SUSD4 3'UTR 0.37 TCGA-D3-A8GI-06 1 223438161 223438161 C T SUSD4 Splice_Site p.X179_splice 0.46 TCGA-D3-A8GI-06 1 223567530 223567530 C T C1orf65 Missense_Mutation p.P238L 0.56 tolerated(0.06) benign(0.325) TCGA-D3-A8GI-06 1 225155458 225155458 C T DNAH14 Intron 0.41 TCGA-D3-A8GI-06 1 226055618 226055618 G A TMEM63A Silent p.L162L 0.31 TCGA-D3-A8GI-06 1 226128697 226128697 C T LEFTY2 Missense_Mutation p.M48I 0.45 tolerated(0.07) benign(0.004) TCGA-D3-A8GI-06 1 226552732 226552732 G A PARP1 Missense_Mutation p.L877F 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 226564847 226564847 G A PARP1 Missense_Mutation p.P635S 0.31 deleterious(0) possibly_damaging(0.624) TCGA-D3-A8GI-06 1 227333423 227333423 G A CDC42BPA Missense_Mutation p.P304S 0.49 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GI-06 1 227618461 227618461 G A CTD-2090I13.1 RNA 0.30 TCGA-D3-A8GI-06 1 228210433 228210433 C T WNT3A Missense_Mutation p.P46L 0.41 tolerated(0.08) benign(0.344) TCGA-D3-A8GI-06 1 2283099 2283099 G A MORN1 Intron 0.50 TCGA-D3-A8GI-06 1 228334622 228334622 G T GUK1 Silent p.G99G 0.33 TCGA-D3-A8GI-06 1 228480406 228480406 C T OBSCN Missense_Mutation p.R4025C 0.35 benign(0.001) TCGA-D3-A8GI-06 1 228493006 228493006 C T OBSCN Missense_Mutation p.H4817Y 0.35 benign(0.405) TCGA-D3-A8GI-06 1 228494733 228494733 C T OBSCN Missense_Mutation p.P4977S 0.44 probably_damaging(0.925) TCGA-D3-A8GI-06 1 228495004 228495004 G A OBSCN Missense_Mutation p.E5037K 0.34 benign(0.012) TCGA-D3-A8GI-06 1 228521369 228521369 C T OBSCN Silent p.I6271I 0.33 TCGA-D3-A8GI-06 1 228557677 228557677 G A OBSCN Missense_Mutation p.D7625N 0.45 probably_damaging(0.991) TCGA-D3-A8GI-06 1 229653979 229653979 G A ABCB10 Missense_Mutation p.P722S 0.35 deleterious(0.04) benign(0.046) TCGA-D3-A8GI-06 1 230841828 230841828 G A AGT Silent p.I325I 0.46 TCGA-D3-A8GI-06 1 230845796 230845796 C T AGT Silent p.L267L 0.52 TCGA-D3-A8GI-06 1 230883202 230883202 C T CAPN9 5'UTR 0.34 TCGA-D3-A8GI-06 1 231067559 231067559 G A TTC13 Missense_Mutation p.H350Y 0.27 tolerated(0.23) possibly_damaging(0.733) TCGA-D3-A8GI-06 1 231333155 231333155 G A TRIM67 Silent p.K361K 0.39 TCGA-D3-A8GI-06 1 231402149 231402149 C T GNPAT Missense_Mutation p.P351S 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 23219532 23219532 G A EPHB2 Missense_Mutation p.M528I 0.47 tolerated(0.19) benign(0.002) TCGA-D3-A8GI-06 1 23233284 23233284 C T EPHB2 Missense_Mutation p.S658L 0.35 deleterious(0.04) benign(0.099) TCGA-D3-A8GI-06 1 233394785 233394785 G A PCNXL2 Missense_Mutation p.P275S 0.39 tolerated_low_confidence(0.07) probably_damaging(0.948) TCGA-D3-A8GI-06 1 233394789 233394789 G A PCNXL2 Silent p.F273F 0.39 TCGA-D3-A8GI-06 1 233515218 233515218 G A MLK4 Silent p.V822V 0.61 TCGA-D3-A8GI-06 1 23357064 23357064 C T KDM1A Missense_Mutation p.P152S 0.38 tolerated_low_confidence(0.77) benign(0.08) TCGA-D3-A8GI-06 1 234367302 234367302 C T SLC35F3 Silent p.V141V 0.47 TCGA-D3-A8GI-06 1 234444880 234444880 G A SLC35F3 Silent p.L214L 0.48 TCGA-D3-A8GI-06 1 235966300 235966300 G A LYST Missense_Mutation p.S1207F 0.49 tolerated(0.09) possibly_damaging(0.624) TCGA-D3-A8GI-06 1 236157029 236157029 C T NID1 Missense_Mutation p.G891S 0.48 tolerated(0.23) benign(0.034) TCGA-D3-A8GI-06 1 236647187 236647187 C T EDARADD 3'Flank 0.43 TCGA-D3-A8GI-06 1 236718882 236718882 G A HEATR1 Missense_Mutation p.S1908F 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 236740202 236740202 G A HEATR1 Missense_Mutation p.R935C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 236898984 236898984 C T ACTN2 Silent p.V249V 0.44 TCGA-D3-A8GI-06 1 236902813 236902813 C T ACTN2 Missense_Mutation p.S363F 0.47 deleterious(0.02) possibly_damaging(0.618) TCGA-D3-A8GI-06 1 237016305 237016305 C T MTR Missense_Mutation p.H624Y 0.48 deleterious(0.01) benign(0.065) TCGA-D3-A8GI-06 1 23763155 23763155 C T ASAP3 Intron 0.42 TCGA-D3-A8GI-06 1 237666806 237666806 G A RYR2 Splice_Site p.X871_splice 0.33 TCGA-D3-A8GI-06 1 237947048 237947048 G A RYR2 Missense_Mutation p.M4012I 0.39 possibly_damaging(0.876) TCGA-D3-A8GI-06 1 237948242 237948242 C T RYR2 Silent p.V4410V 0.33 TCGA-D3-A8GI-06 1 240071808 240071808 G A CHRM3 Missense_Mutation p.D353N 0.50 deleterious(0.02) benign(0.418) TCGA-D3-A8GI-06 1 240071910 240071910 G A CHRM3 Missense_Mutation p.D387N 0.28 tolerated(0.23) benign(0.139) TCGA-D3-A8GI-06 1 240370204 240370204 C T FMN2 Missense_Mutation p.P698S 0.47 unknown(0) TCGA-D3-A8GI-06 1 240975258 240975258 G A RGS7 Missense_Mutation p.L348F 0.33 tolerated(0.18) probably_damaging(0.997) TCGA-D3-A8GI-06 1 241031902 241031902 G A RGS7 Silent p.D198D 0.40 TCGA-D3-A8GI-06 1 241757981 241757981 G A OPN3 Missense_Mutation p.L320F 0.42 tolerated(0.26) benign(0.039) TCGA-D3-A8GI-06 1 24201066 24201066 G A CNR2 Missense_Mutation p.P348S 0.47 tolerated(0.78) benign(0.002) TCGA-D3-A8GI-06 1 24201817 24201817 G A CNR2 Silent p.F97F 0.33 TCGA-D3-A8GI-06 1 2420778 2420778 C T PLCH2 Silent p.L429L 0.27 TCGA-D3-A8GI-06 1 2435933 2435933 G A PLCH2 3'UTR 0.42 TCGA-D3-A8GI-06 1 243809230 243809230 C T AKT3 Missense_Mutation p.E132K 0.44 tolerated(0.17) benign(0.066) TCGA-D3-A8GI-06 1 243809231 243809231 T A AKT3 Missense_Mutation p.E131D 0.44 tolerated(0.43) benign(0.066) TCGA-D3-A8GI-06 1 24392481 24392481 G A MYOM3 Missense_Mutation p.T1145I 0.41 tolerated(0.29) possibly_damaging(0.604) TCGA-D3-A8GI-06 1 2442153 2442153 G A PANK4 Silent p.F634F 0.45 TCGA-D3-A8GI-06 1 24454695 24454695 C T IL22RA1 Missense_Mutation p.M202I 0.46 tolerated(0.38) benign(0.001) TCGA-D3-A8GI-06 1 244615032 244615032 C T ADSS Missense_Mutation p.V30M 0.44 deleterious(0) possibly_damaging(0.875) TCGA-D3-A8GI-06 1 2452215 2452215 G A PANK4 Missense_Mutation p.H185Y 0.41 deleterious(0.01) benign(0.254) TCGA-D3-A8GI-06 1 245250566 245250566 G A EFCAB2 Silent p.E131E 0.31 TCGA-D3-A8GI-06 1 246707878 246707878 G A TFB2M Missense_Mutation p.H322Y 0.46 tolerated(0.35) possibly_damaging(0.703) TCGA-D3-A8GI-06 1 247150764 247150764 G A ZNF695 Silent p.T351T 0.52 TCGA-D3-A8GI-06 1 247473692 247473692 G A ZNF496 Missense_Mutation p.P240S 0.39 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A8GI-06 1 247473700 247473700 A C ZNF496 Missense_Mutation p.L237R 0.38 tolerated(0.09) probably_damaging(0.993) TCGA-D3-A8GI-06 1 247588485 247588485 C T NLRP3 Silent p.L580L 0.45 TCGA-D3-A8GI-06 1 247751818 247751818 C T OR2G2 Missense_Mutation p.R53C 0.28 tolerated(0.2) benign(0.001) TCGA-D3-A8GI-06 1 247751836 247751836 C T OR2G2 Missense_Mutation p.H59Y 0.28 deleterious(0.01) possibly_damaging(0.833) TCGA-D3-A8GI-06 1 247751905 247751905 C T OR2G2 Missense_Mutation p.P82S 0.46 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 1 247769295 247769295 G A OR2G3 Missense_Mutation p.M136I 0.34 deleterious(0.03) benign(0.134) TCGA-D3-A8GI-06 1 247769607 247769607 C T OR2G3 Silent p.T240T 0.30 TCGA-D3-A8GI-06 1 247836104 247836104 C T OR13G1 Silent p.G80G 0.45 TCGA-D3-A8GI-06 1 247875798 247875798 C T OR6F1 Missense_Mutation p.G87E 0.39 tolerated(0.36) possibly_damaging(0.796) TCGA-D3-A8GI-06 1 247920818 247920818 C T OR1C1 Missense_Mutation p.M297I 0.33 tolerated(0.26) benign(0.024) TCGA-D3-A8GI-06 1 247978121 247978121 C T OR14A16 Missense_Mutation p.G304E 0.27 tolerated(0.96) benign(0.017) TCGA-D3-A8GI-06 1 248128799 248128799 G A OR2AK2 Missense_Mutation p.G56R 0.47 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GI-06 1 248201482 248201482 T G OR2L2 5'UTR 0.40 TCGA-D3-A8GI-06 1 248263577 248263577 G A OR2L13 Missense_Mutation p.M300I 0.45 deleterious(0.02) benign(0.001) TCGA-D3-A8GI-06 1 248308457 248308457 G A OR2M5 Nonsense_Mutation p.W3* 0.42 TCGA-D3-A8GI-06 1 248308943 248308943 C T OR2M5 Missense_Mutation p.S165F 0.36 deleterious(0.03) benign(0.075) TCGA-D3-A8GI-06 1 248309128 248309128 C T OR2M5 Missense_Mutation p.H227Y 0.45 tolerated(0.11) benign(0.014) TCGA-D3-A8GI-06 1 248366864 248366864 C T OR2M3 Silent p.S165S 0.41 TCGA-D3-A8GI-06 1 248402466 248402466 C T OR2M4 Missense_Mutation p.P79L 0.47 deleterious(0) benign(0.32) TCGA-D3-A8GI-06 1 248402872 248402872 C T OR2M4 Silent p.I214I 0.36 TCGA-D3-A8GI-06 1 248436366 248436366 C T OR2T33 Missense_Mutation p.G251R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 248436473 248436473 G A OR2T33 Missense_Mutation p.S215F 0.41 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GI-06 1 248436488 248436488 G A OR2T33 Missense_Mutation p.S210F 0.17 deleterious(0.03) benign(0.232) TCGA-D3-A8GI-06 1 248436733 248436733 G A OR2T33 Silent p.L128L 0.19 TCGA-D3-A8GI-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.37 deleterious(0.03) benign(0.232) TCGA-D3-A8GI-06 1 248458774 248458774 G A OR2T12 Missense_Mutation p.S36F 0.32 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GI-06 1 248512675 248512675 C T OR14C36 Missense_Mutation p.S200F 0.52 tolerated(0.82) benign(0.208) TCGA-D3-A8GI-06 1 248512999 248512999 A T OR14C36 Missense_Mutation p.Y308F 0.60 tolerated(0.95) benign(0.008) TCGA-D3-A8GI-06 1 248525317 248525317 C T OR2T4 Silent p.F145F 0.56 TCGA-D3-A8GI-06 1 248525566 248525566 G A OR2T4 Silent p.E228E 0.40 TCGA-D3-A8GI-06 1 248551050 248551050 C T OR2T6 Silent p.F47F 0.35 TCGA-D3-A8GI-06 1 248551653 248551653 G A OR2T6 Silent p.V248V 0.45 TCGA-D3-A8GI-06 1 248551756 248551756 C T OR2T6 Missense_Mutation p.P283S 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 1 248616499 248616499 C T OR2T2 Missense_Mutation p.P134L 0.15 deleterious(0) benign(0.202) TCGA-D3-A8GI-06 1 248636789 248636789 G A OR2T3 Silent p.G46G 0.37 TCGA-D3-A8GI-06 1 248737466 248737466 G A OR2T34 Missense_Mutation p.S198F 0.24 deleterious(0.03) benign(0.018) TCGA-D3-A8GI-06 1 248756511 248756511 G A OR2T10 Missense_Mutation p.L187F 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 248756572 248756572 G A OR2T10 Silent p.F166F 0.39 TCGA-D3-A8GI-06 1 248789678 248789678 G A OR2T11 Missense_Mutation p.A251V 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 1 248789698 248789698 T A OR2T11 Silent p.V244V 0.38 TCGA-D3-A8GI-06 1 248789789 248789789 G A OR2T11 Missense_Mutation p.S214F 0.48 deleterious(0) probably_damaging(0.926) TCGA-D3-A8GI-06 1 248813327 248813327 G A OR2T27 Missense_Mutation p.P287S 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 248814048 248814048 G A OR2T27 Silent p.I46I 0.30 TCGA-D3-A8GI-06 1 2524112 2524112 C T MMEL1 Silent p.G683G 0.55 TCGA-D3-A8GI-06 1 26310484 26310484 G A PAFAH2 Missense_Mutation p.R169C 0.47 deleterious(0) possibly_damaging(0.79) TCGA-D3-A8GI-06 1 26365742 26365742 C T SLC30A2 Missense_Mutation p.G343E 0.48 tolerated(0.66) benign(0.046) TCGA-D3-A8GI-06 1 26370848 26370848 G A SLC30A2 Missense_Mutation p.S120F 0.62 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GI-06 1 26516018 26516018 C T CNKSR1 Silent p.S707S 0.44 TCGA-D3-A8GI-06 1 26527433 26527433 C T CATSPER4 Missense_Mutation p.S367L 0.60 tolerated(0.27) benign(0.009) TCGA-D3-A8GI-06 1 26644719 26644719 C T UBXN11 5'UTR 0.60 TCGA-D3-A8GI-06 1 26644720 26644720 C T UBXN11 5'UTR 0.60 TCGA-D3-A8GI-06 1 27440501 27440501 G A SLC9A1 Missense_Mutation p.A210V 0.35 deleterious(0.05) possibly_damaging(0.857) TCGA-D3-A8GI-06 1 27721395 27721395 C T GPR3 3'UTR 0.45 TCGA-D3-A8GI-06 1 27939402 27939402 G A FGR 3'UTR 0.56 TCGA-D3-A8GI-06 1 27943796 27943796 C T FGR Missense_Mutation p.G147E 0.46 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 1 28282635 28282635 G A SMPDL3B Intron 0.37 TCGA-D3-A8GI-06 1 28320009 28320009 G A EYA3 Missense_Mutation p.S402F 0.45 tolerated(0.08) possibly_damaging(0.789) TCGA-D3-A8GI-06 1 28362145 28362145 G A EYA3 Missense_Mutation p.P91S 0.35 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 1 29338416 29338416 C T EPB41 Missense_Mutation p.R276C 0.43 deleterious(0) possibly_damaging(0.857) TCGA-D3-A8GI-06 1 2938475 2938475 C T ACTRT2 Silent p.F75F 0.42 TCGA-D3-A8GI-06 1 31206728 31206728 G T LAPTM5 Missense_Mutation p.P246T 0.17 deleterious(0) possibly_damaging(0.745) TCGA-D3-A8GI-06 1 31422026 31422026 G A PUM1 Intron 0.27 TCGA-D3-A8GI-06 1 31902304 31902304 C T AC114494.1 Missense_Mutation p.G104E 0.40 probably_damaging(0.97) TCGA-D3-A8GI-06 1 32092597 32092597 G A HCRTR1 3'UTR 0.47 TCGA-D3-A8GI-06 1 32092613 32092613 G A HCRTR1 3'UTR 0.46 TCGA-D3-A8GI-06 1 32263834 32263834 G A SPOCD1 Missense_Mutation p.R707C 0.38 deleterious(0.03) benign(0.189) TCGA-D3-A8GI-06 1 32280658 32280658 C T SPOCD1 Missense_Mutation p.G93S 0.44 tolerated_low_confidence(0.18) benign(0.065) TCGA-D3-A8GI-06 1 32496018 32496018 C T KHDRBS1 Missense_Mutation p.P168S 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 1 32568341 32568341 G A TMEM39B 3'UTR 0.37 TCGA-D3-A8GI-06 1 32672869 32672869 C T IQCC Missense_Mutation p.S276F 0.45 deleterious(0.03) benign(0.004) TCGA-D3-A8GI-06 1 32745457 32745457 G A LCK Missense_Mutation p.A353T 0.42 deleterious(0.02) probably_damaging(0.956) TCGA-D3-A8GI-06 1 32782321 32782321 T A HDAC1 Missense_Mutation p.I73N 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 33236215 33236215 C T KIAA1522 Missense_Mutation p.R479W 0.59 deleterious(0) unknown(0) TCGA-D3-A8GI-06 1 33236470 33236470 C T KIAA1522 Missense_Mutation p.P564S 0.42 tolerated(0.1) unknown(0) TCGA-D3-A8GI-06 1 3328282 3328282 C T PRDM16 Silent p.F507F 0.43 TCGA-D3-A8GI-06 1 33291923 33291923 G T S100PBP Nonsense_Mutation p.E75* 0.48 TCGA-D3-A8GI-06 1 3331163 3331163 C T PRDM16 Silent p.A881A 0.38 TCGA-D3-A8GI-06 1 3334530 3334530 C T PRDM16 Missense_Mutation p.L944F 0.28 deleterious(0.01) probably_damaging(0.938) TCGA-D3-A8GI-06 1 34003131 34003131 G A CSMD2 Missense_Mutation p.S3093F 0.51 tolerated(0.1) benign(0.008) TCGA-D3-A8GI-06 1 34003149 34003149 G A CSMD2 Missense_Mutation p.S3087F 0.57 deleterious(0.04) benign(0.392) TCGA-D3-A8GI-06 1 34006871 34006871 G A CSMD2 Missense_Mutation p.L2962F 0.32 tolerated(0.4) benign(0.012) TCGA-D3-A8GI-06 1 34038271 34038271 C T CSMD2 Missense_Mutation p.E2535K 0.41 tolerated(0.75) benign(0.003) TCGA-D3-A8GI-06 1 34049275 34049275 C T CSMD2 Missense_Mutation p.E2405K 0.40 deleterious(0.03) possibly_damaging(0.858) TCGA-D3-A8GI-06 1 34076689 34076689 G A CSMD2 Missense_Mutation p.H2059Y 0.42 tolerated(0.53) benign(0.179) TCGA-D3-A8GI-06 1 3410380 3410380 G A MEGF6 Missense_Mutation p.L1448F 0.40 tolerated(0.42) benign(0.243) TCGA-D3-A8GI-06 1 34182057 34182057 C T CSMD2 Missense_Mutation p.D976N 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 34189893 34189893 G A CSMD2 Nonsense_Mutation p.Q929* 0.55 TCGA-D3-A8GI-06 1 34209127 34209127 G A CSMD2 Missense_Mutation p.H603Y 0.34 deleterious(0) possibly_damaging(0.904) TCGA-D3-A8GI-06 1 34285335 34285335 C T CSMD2 Missense_Mutation p.D395N 0.39 tolerated(0.07) probably_damaging(0.954) TCGA-D3-A8GI-06 1 34286078 34286078 C T CSMD2 Silent p.S357S 0.43 TCGA-D3-A8GI-06 1 34329816 34329816 G A HMGB4 Silent p.K8K 0.50 TCGA-D3-A8GI-06 1 34663221 34663221 T G C1orf94 Missense_Mutation p.L239R 0.44 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 1 34677907 34677907 C T C1orf94 Missense_Mutation p.P541S 0.39 tolerated(0.57) benign(0.093) TCGA-D3-A8GI-06 1 34677971 34677971 G A C1orf94 Missense_Mutation p.G562E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 3496467 3496467 G A MEGF6 Missense_Mutation p.H135Y 0.50 tolerated(0.07) benign(0.02) TCGA-D3-A8GI-06 1 35223079 35223079 G A GJB5 Missense_Mutation p.D50N 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GI-06 1 35227201 35227201 C T GJB4 Silent p.L116L 0.38 TCGA-D3-A8GI-06 1 35320640 35320640 G A SMIM12 3'UTR 0.37 TCGA-D3-A8GI-06 1 35370135 35370135 C T DLGAP3 Missense_Mutation p.G284S 0.51 tolerated(0.89) benign(0.221) TCGA-D3-A8GI-06 1 35852679 35852679 C T ZMYM4 Missense_Mutation p.P638S 0.42 tolerated(0.33) benign(0.031) TCGA-D3-A8GI-06 1 35863071 35863071 C T ZMYM4 Missense_Mutation p.P1042S 0.36 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A8GI-06 1 35913833 35913833 G A KIAA0319L Silent p.L818L 0.49 TCGA-D3-A8GI-06 1 3680298 3680298 G A CCDC27 Silent p.V450V 0.36 TCGA-D3-A8GI-06 1 3683132 3683132 G A CCDC27 Missense_Mutation p.E496K 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GI-06 1 36927753 36927753 G A MRPS15 Silent p.L63L 0.33 TCGA-D3-A8GI-06 1 36932101 36932101 G A CSF3R Missense_Mutation p.L817F 0.40 deleterious(0) probably_damaging(0.94) TCGA-D3-A8GI-06 1 37267514 37267514 G A GRIK3 Missense_Mutation p.R900C 0.52 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-D3-A8GI-06 1 37307466 37307466 G A GRIK3 Silent p.I467I 0.46 TCGA-D3-A8GI-06 1 37356636 37356636 G A GRIK3 Silent p.A59A 0.36 TCGA-D3-A8GI-06 1 39799636 39799636 T C MACF1 Intron 0.41 TCGA-D3-A8GI-06 1 40029545 40029545 G A PABPC4 Silent p.A501A 0.42 TCGA-D3-A8GI-06 1 40029546 40029546 G A PABPC4 Missense_Mutation p.A501V 0.44 tolerated(0.39) benign(0.014) TCGA-D3-A8GI-06 1 40125155 40125155 G A NT5C1A Missense_Mutation p.P249S 0.45 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 1 4014653 4014653 C T RP13-614K11.1 RNA 0.36 TCGA-D3-A8GI-06 1 40148154 40148154 G A HPCAL4 3'UTR 0.53 TCGA-D3-A8GI-06 1 40236166 40236166 G A OXCT2 Silent p.F254F 0.40 TCGA-D3-A8GI-06 1 40432487 40432487 C T MFSD2A Silent p.P283P 0.33 TCGA-D3-A8GI-06 1 40769220 40769220 G A COL9A2 Silent p.P510P 0.43 TCGA-D3-A8GI-06 1 40928855 40928855 T C ZFP69B Missense_Mutation p.F400S 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 1 42046718 42046718 G A HIVEP3 Missense_Mutation p.P1251S 0.40 probably_damaging(0.998) TCGA-D3-A8GI-06 1 42048869 42048869 G A HIVEP3 Missense_Mutation p.P534S 0.36 probably_damaging(0.943) TCGA-D3-A8GI-06 1 42049052 42049052 C T HIVEP3 Missense_Mutation p.E473K 0.44 probably_damaging(0.994) TCGA-D3-A8GI-06 1 42621206 42621206 G A GUCA2B Missense_Mutation p.R93K 0.37 tolerated(0.42) benign(0.041) TCGA-D3-A8GI-06 1 42880433 42880433 G A RIMKLA Missense_Mutation p.E322K 0.40 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 1 42896189 42896189 G A ZMYND12 3'UTR 0.50 TCGA-D3-A8GI-06 1 42896416 42896416 G A ZMYND12 Silent p.P363P 0.36 TCGA-D3-A8GI-06 1 42898829 42898829 C T ZMYND12 Missense_Mutation p.M320I 0.36 tolerated(0.59) possibly_damaging(0.554) TCGA-D3-A8GI-06 1 43111884 43111884 G A CCDC30 Missense_Mutation p.E657K 0.44 tolerated(0.89) benign(0.001) TCGA-D3-A8GI-06 1 43663333 43663333 G A WDR65 Missense_Mutation p.R411Q 0.48 tolerated(0.1) benign(0.013) TCGA-D3-A8GI-06 1 43784946 43784946 G A TIE1 Missense_Mutation p.G988E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 43784996 43784996 G A TIE1 Missense_Mutation p.E1005K 0.39 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 1 44054643 44054643 C T PTPRF Silent p.I307I 0.42 TCGA-D3-A8GI-06 1 44595442 44595442 C T KLF17 Missense_Mutation p.P167S 0.40 tolerated(0.52) benign(0.128) TCGA-D3-A8GI-06 1 44877963 44877963 G A RNF220 Missense_Mutation p.G65D 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-D3-A8GI-06 1 44877999 44877999 G A RNF220 Missense_Mutation p.G77D 0.41 tolerated(0.23) probably_damaging(0.928) TCGA-D3-A8GI-06 1 45341322 45341322 G A EIF2B3 Missense_Mutation p.H341Y 0.45 deleterious(0.01) benign(0.379) TCGA-D3-A8GI-06 1 45508969 45508969 C T ZSWIM5 Missense_Mutation p.D511N 0.42 deleterious(0.01) unknown(0) TCGA-D3-A8GI-06 1 45799177 45799177 G A MUTYH Silent p.L83L 0.52 TCGA-D3-A8GI-06 1 46812683 46812683 C T NSUN4 Silent p.I176I 0.46 TCGA-D3-A8GI-06 1 46871290 46871290 G A FAAH Silent p.Q203Q 0.47 TCGA-D3-A8GI-06 1 47264767 47264767 T A CYP4B1 Missense_Mutation p.F5Y 0.44 tolerated(0.44) benign(0) TCGA-D3-A8GI-06 1 47264768 47264768 C T CYP4B1 Silent p.F5F 0.44 TCGA-D3-A8GI-06 1 47489651 47489651 C T CYP4X1 Silent p.F54F 0.30 TCGA-D3-A8GI-06 1 47548019 47548019 G A CYP4Z1 Silent p.V126V 0.30 TCGA-D3-A8GI-06 1 49224790 49224790 G A BEND5 Missense_Mutation p.A176V 0.49 tolerated(0.09) possibly_damaging(0.534) TCGA-D3-A8GI-06 1 50610686 50610686 G A ELAVL4 Missense_Mutation p.G40R 0.40 tolerated_low_confidence(0.26) possibly_damaging(0.568) TCGA-D3-A8GI-06 1 50661354 50661354 C T ELAVL4 Silent p.A227A 0.40 TCGA-D3-A8GI-06 1 52442669 52442669 G A RAB3B Missense_Mutation p.R41C 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 52924021 52924021 G C ZCCHC11 Missense_Mutation p.P1141R 0.33 deleterious(0) possibly_damaging(0.743) TCGA-D3-A8GI-06 1 53267500 53267500 C T ZYG11B Nonsense_Mutation p.Q499* 0.45 TCGA-D3-A8GI-06 1 53543462 53543462 G A PODN Missense_Mutation p.E330K 0.45 tolerated(0.28) possibly_damaging(0.832) TCGA-D3-A8GI-06 1 53608092 53608092 C T SLC1A7 Silent p.G10G 0.60 TCGA-D3-A8GI-06 1 53701285 53701285 G T MAGOH Missense_Mutation p.N37K 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GI-06 1 53712680 53712680 G A LRP8 3'UTR 0.44 TCGA-D3-A8GI-06 1 54418095 54418095 C T LRRC42 Silent p.F141F 0.37 TCGA-D3-A8GI-06 1 54653363 54653363 G A CYB5RL Missense_Mutation p.P133S 0.42 tolerated(0.19) benign(0.034) TCGA-D3-A8GI-06 1 55060259 55060259 G A ACOT11 Missense_Mutation p.E168K 0.54 tolerated(0.06) benign(0.15) TCGA-D3-A8GI-06 1 55089063 55089063 G A FAM151A Silent p.V2V 0.37 TCGA-D3-A8GI-06 1 55089146 55089146 G A FAM151A 5'UTR 0.46 TCGA-D3-A8GI-06 1 55139749 55139749 G A MROH7 Missense_Mutation p.D621N 0.53 deleterious(0.02) possibly_damaging(0.449) TCGA-D3-A8GI-06 1 55167771 55167771 G A MROH7 Silent p.E1098E 0.33 TCGA-D3-A8GI-06 1 55168398 55168398 G A MROH7 Missense_Mutation p.A1182T 0.41 tolerated(0.36) benign(0.015) TCGA-D3-A8GI-06 1 55464774 55464774 C T BSND 5'UTR 0.57 TCGA-D3-A8GI-06 1 57257788 57257788 C T C1orf168 Missense_Mutation p.S233N 0.55 tolerated(0.1) benign(0.126) TCGA-D3-A8GI-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.42 TCGA-D3-A8GI-06 1 57257945 57257945 C T C1orf168 Missense_Mutation p.E181K 0.44 tolerated(0.63) benign(0.034) TCGA-D3-A8GI-06 1 57320603 57320603 C T C8A Missense_Mutation p.S10F 0.50 tolerated(0.62) benign(0.006) TCGA-D3-A8GI-06 1 57340744 57340744 G A C8A Silent p.Q98Q 0.55 TCGA-D3-A8GI-06 1 57351675 57351675 G A C8A Missense_Mutation p.D311N 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GI-06 1 57480751 57480751 C T DAB1 Missense_Mutation p.D417N 0.35 tolerated(0.09) possibly_damaging(0.81) TCGA-D3-A8GI-06 1 61553856 61553856 C T NFIA Silent p.P66P 0.38 TCGA-D3-A8GI-06 1 6172338 6172338 C T CHD5 Splice_Site p.X1668_splice 0.46 TCGA-D3-A8GI-06 1 61848934 61848934 G A NFIA Silent p.K369K 0.33 TCGA-D3-A8GI-06 1 6215661 6215661 G A CHD5 Silent p.L168L 0.45 TCGA-D3-A8GI-06 1 62340967 62340967 G A INADL Missense_Mutation p.G963E 0.37 tolerated(0.05) benign(0.339) TCGA-D3-A8GI-06 1 62367037 62367037 G A INADL Missense_Mutation p.G1096E 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 62676041 62676041 C T L1TD1 Missense_Mutation p.T532I 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.848) TCGA-D3-A8GI-06 1 62739799 62739799 C T KANK4 Missense_Mutation p.R326K 0.32 tolerated(0.4) benign(0.025) TCGA-D3-A8GI-06 1 63282370 63282370 C T ATG4C Silent p.F95F 0.37 TCGA-D3-A8GI-06 1 64608381 64608381 C T ROR1 Intron 0.30 TCGA-D3-A8GI-06 1 64698329 64698329 C T UBE2U Missense_Mutation p.P198S 0.45 tolerated(0.21) benign(0.14) TCGA-D3-A8GI-06 1 65099831 65099831 C T CACHD1 Silent p.S247S 0.34 TCGA-D3-A8GI-06 1 65339088 65339088 G A JAK1 Missense_Mutation p.L150F 0.31 tolerated(0.1) benign(0.023) TCGA-D3-A8GI-06 1 65855087 65855087 C T DNAJC6 Missense_Mutation p.L448F 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 1 67559194 67559194 C T C1orf141 Missense_Mutation p.E233K 0.47 tolerated(0.12) benign(0) TCGA-D3-A8GI-06 1 67591459 67591459 G A C1orf141 Missense_Mutation p.S70L 0.46 tolerated(0.68) probably_damaging(0.943) TCGA-D3-A8GI-06 1 69517 69517 G A OR4F5 Missense_Mutation p.G143R 0.76 deleterious(0.03) possibly_damaging(0.871) TCGA-D3-A8GI-06 1 71873121 71873121 C T NEGR1 3'UTR 0.34 TCGA-D3-A8GI-06 1 71873150 71873150 C T NEGR1 Silent p.L348L 0.52 TCGA-D3-A8GI-06 1 74492436 74492436 C T LRRIQ3 3'UTR 0.31 TCGA-D3-A8GI-06 1 74648284 74648284 G A LRRIQ3 Missense_Mutation p.P171S 0.32 deleterious(0.03) benign(0.232) TCGA-D3-A8GI-06 1 74957781 74957781 C T TNNI3K Silent p.L829L 0.39 TCGA-D3-A8GI-06 1 75037434 75037434 C T C1orf173 Missense_Mutation p.M1320I 0.39 tolerated(0.4) benign(0.003) TCGA-D3-A8GI-06 1 75037856 75037856 C T C1orf173 Missense_Mutation p.E1180K 0.38 tolerated(0.06) probably_damaging(0.91) TCGA-D3-A8GI-06 1 75038256 75038256 C T C1orf173 Silent p.R1046R 0.31 TCGA-D3-A8GI-06 1 75038300 75038300 C T C1orf173 Missense_Mutation p.E1032K 0.35 tolerated(0.11) benign(0.041) TCGA-D3-A8GI-06 1 75038477 75038477 C T C1orf173 Missense_Mutation p.A973T 0.43 deleterious(0.03) possibly_damaging(0.87) TCGA-D3-A8GI-06 1 75038708 75038708 C T C1orf173 Missense_Mutation p.E896K 0.38 deleterious(0.04) benign(0.206) TCGA-D3-A8GI-06 1 75038884 75038884 C T C1orf173 Missense_Mutation p.R837K 0.48 tolerated(0.37) benign(0.001) TCGA-D3-A8GI-06 1 75039077 75039077 C T C1orf173 Missense_Mutation p.E773K 0.45 tolerated(0.06) benign(0.021) TCGA-D3-A8GI-06 1 75078492 75078492 C T C1orf173 Silent p.E334E 0.40 TCGA-D3-A8GI-06 1 75086451 75086451 G A C1orf173 Missense_Mutation p.L323F 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 1 75101978 75101978 G A C1orf173 Silent p.L197L 0.46 TCGA-D3-A8GI-06 1 75679428 75679428 C T SLC44A5 Missense_Mutation p.G642R 0.43 tolerated(0.47) probably_damaging(0.952) TCGA-D3-A8GI-06 1 75684353 75684353 G A SLC44A5 Nonsense_Mutation p.Q451* 0.46 TCGA-D3-A8GI-06 1 75685015 75685015 G A SLC44A5 Missense_Mutation p.S398L 0.38 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A8GI-06 1 75688108 75688108 G A SLC44A5 Silent p.L341L 0.38 TCGA-D3-A8GI-06 1 76259806 76259806 C T RABGGTB Missense_Mutation p.S248F 0.35 deleterious(0.01) benign(0.29) TCGA-D3-A8GI-06 1 7723467 7723467 C T CAMTA1 Missense_Mutation p.S287L 0.35 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 1 7723655 7723655 G A CAMTA1 Missense_Mutation p.E350K 0.49 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A8GI-06 1 77510056 77510056 C T ST6GALNAC5 Silent p.V143V 0.39 TCGA-D3-A8GI-06 1 78399103 78399103 G A NEXN Missense_Mutation p.R397Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 1 7887696 7887696 C T PER3 Missense_Mutation p.P895S 0.33 tolerated(1) benign(0) TCGA-D3-A8GI-06 1 79412073 79412073 C T ELTD1 Missense_Mutation p.E71K 0.39 deleterious_low_confidence(0.01) benign(0.362) TCGA-D3-A8GI-06 1 82302661 82302661 G A LPHN2 5'UTR 0.43 TCGA-D3-A8GI-06 1 82408785 82408785 C T LPHN2 Missense_Mutation p.P177L 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 82416101 82416101 G A LPHN2 Missense_Mutation p.G476E 0.46 tolerated(0.6) benign(0.041) TCGA-D3-A8GI-06 1 8390654 8390654 C T SLC45A1 Silent p.S367S 0.33 TCGA-D3-A8GI-06 1 8390765 8390765 C T SLC45A1 Silent p.F404F 0.59 TCGA-D3-A8GI-06 1 84946686 84946686 T C RPF1 Silent p.L92L 0.40 TCGA-D3-A8GI-06 1 85405245 85405245 G A MCOLN2 Silent p.I367I 0.50 TCGA-D3-A8GI-06 1 86200582 86200582 A T COL24A1 Missense_Mutation p.H1616Q 0.39 tolerated(1) benign(0.097) TCGA-D3-A8GI-06 1 86200612 86200612 G A COL24A1 Silent p.F1606F 0.46 TCGA-D3-A8GI-06 1 86375664 86375664 G A COL24A1 Missense_Mutation p.P880L 0.42 tolerated(0.2) probably_damaging(1) TCGA-D3-A8GI-06 1 86377063 86377063 C G COL24A1 Missense_Mutation p.K872N 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 1 86591498 86591498 C T COL24A1 Missense_Mutation p.S174N 0.31 tolerated(0.32) benign(0.001) TCGA-D3-A8GI-06 1 87031503 87031503 G A CLCA4 Missense_Mutation p.E252K 0.34 tolerated(0.56) benign(0.079) TCGA-D3-A8GI-06 1 87040234 87040234 G A CLCA4 Silent p.K493K 0.39 TCGA-D3-A8GI-06 1 87041152 87041152 C T CLCA4 Silent p.F607F 0.39 TCGA-D3-A8GI-06 1 87102509 87102509 C T RP4-651E10.4 Intron 0.32 TCGA-D3-A8GI-06 1 87104641 87104641 G A RP4-651E10.4 Intron 0.32 TCGA-D3-A8GI-06 1 874455 874455 C T SAMD11 Missense_Mutation p.R156C 0.50 deleterious(0.04) benign(0) TCGA-D3-A8GI-06 1 89615043 89615043 C A GBP7 Nonsense_Mutation p.E362* 0.34 TCGA-D3-A8GI-06 1 89851090 89851090 C T GBP6 3'UTR 0.34 TCGA-D3-A8GI-06 1 906373 906373 C T PLEKHN1 Missense_Mutation p.S200L 0.33 tolerated(0.1) benign(0.008) TCGA-D3-A8GI-06 1 9164579 9164579 G A GPR157 Missense_Mutation p.P303S 0.40 tolerated(0.66) benign(0.002) TCGA-D3-A8GI-06 1 91841234 91841234 C T HFM1 Missense_Mutation p.M482I 0.38 tolerated(0.47) benign(0.002) TCGA-D3-A8GI-06 1 91977351 91977351 C T CDC7 Missense_Mutation p.S148F 0.39 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A8GI-06 1 92442620 92442620 G A BRDT Silent p.R213R 0.42 TCGA-D3-A8GI-06 1 92446201 92446201 T C BRDT Missense_Mutation p.L430P 0.46 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GI-06 1 92528792 92528792 G A EPHX4 Silent p.V346V 0.37 TCGA-D3-A8GI-06 1 92568063 92568063 C T BTBD8 Silent p.N127N 0.35 TCGA-D3-A8GI-06 1 9324080 9324080 C T H6PD Silent p.L510L 0.40 TCGA-D3-A8GI-06 1 93257907 93257907 C T EVI5 Silent p.G15G 0.39 TCGA-D3-A8GI-06 1 93704973 93704973 C T CCDC18 Nonsense_Mutation p.Q957* 0.43 TCGA-D3-A8GI-06 1 94014975 94014975 C T FNBP1L Missense_Mutation p.P548L 0.50 tolerated(0.08) benign(0.316) TCGA-D3-A8GI-06 1 94645472 94645472 A G ARHGAP29 Silent p.F763F 0.45 TCGA-D3-A8GI-06 1 94650546 94650546 C T ARHGAP29 Missense_Mutation p.G664E 0.25 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 1 94668128 94668128 C T ARHGAP29 Missense_Mutation p.R372Q 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 1 94668540 94668540 C T ARHGAP29 Silent p.R296R 0.27 TCGA-D3-A8GI-06 1 95303278 95303278 C T SLC44A3 Missense_Mutation p.P174L 0.33 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 1 97700490 97700490 C T DPYD Missense_Mutation p.G787E 0.53 tolerated(0.08) benign(0.034) TCGA-D3-A8GI-06 1 99762350 99762350 C T LPPR4 Silent p.V155V 0.38 TCGA-D3-A8GI-06 20 10030093 10030093 G A ANKEF1 Silent p.K292K 0.41 TCGA-D3-A8GI-06 20 10030294 10030294 C T ANKEF1 Silent p.F359F 0.47 TCGA-D3-A8GI-06 20 10030498 10030498 G A ANKEF1 Silent p.G427G 0.48 TCGA-D3-A8GI-06 20 123309 123309 C T DEFB126 Silent p.L14L 0.44 TCGA-D3-A8GI-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.41 tolerated(0.25) probably_damaging(0.996) TCGA-D3-A8GI-06 20 13053034 13053034 C T SPTLC3 Missense_Mutation p.S145L 0.38 deleterious(0) benign(0.371) TCGA-D3-A8GI-06 20 13279656 13279656 G A ISM1 Silent p.V315V 0.41 TCGA-D3-A8GI-06 20 1514929 1514929 C A SIRPD 3'UTR 0.36 TCGA-D3-A8GI-06 20 1532459 1532459 A T SIRPD Missense_Mutation p.F100Y 0.37 tolerated(0.06) benign(0.346) TCGA-D3-A8GI-06 20 1532625 1532625 C T RP4-576H24.4 Missense_Mutation p.E164K 0.43 tolerated(0.22) benign(0.109) TCGA-D3-A8GI-06 20 1559039 1559039 C T RP4-576H24.4 Silent p.G125G 0.39 TCGA-D3-A8GI-06 20 1600595 1600595 G A SIRPB1 5'UTR 0.41 TCGA-D3-A8GI-06 20 1629851 1629851 C T SIRPG Missense_Mutation p.D93N 0.43 deleterious(0.05) possibly_damaging(0.498) TCGA-D3-A8GI-06 20 16348116 16348116 G A KIF16B Missense_Mutation p.P1285L 0.45 deleterious_low_confidence(0) benign(0.012) TCGA-D3-A8GI-06 20 16360709 16360709 G A KIF16B Silent p.I646I 0.42 TCGA-D3-A8GI-06 20 17705790 17705790 C T BANF2 Silent p.I47I 0.38 TCGA-D3-A8GI-06 20 18794748 18794748 C T SCP2D1 Missense_Mutation p.P97S 0.48 tolerated(0.34) benign(0.076) TCGA-D3-A8GI-06 20 19701757 19701757 G A SLC24A3 Silent p.V636V 0.45 TCGA-D3-A8GI-06 20 20054981 20054981 C T C20orf26 Silent p.A110A 0.34 TCGA-D3-A8GI-06 20 20232311 20232311 G A C20orf26 Missense_Mutation p.M744I 0.42 tolerated(0.06) probably_damaging(0.929) TCGA-D3-A8GI-06 20 20269523 20269523 G A C20orf26 Missense_Mutation p.E1023K 0.45 tolerated(0.26) possibly_damaging(0.49) TCGA-D3-A8GI-06 20 20350157 20350157 G A INSM1 Missense_Mutation p.E416K 0.47 tolerated(0.07) benign(0.305) TCGA-D3-A8GI-06 20 20553675 20553675 G A RALGAPA2 Silent p.I915I 0.33 TCGA-D3-A8GI-06 20 21687255 21687255 G A PAX1 Missense_Mutation p.E156K 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 23065488 23065488 C T CD93 Missense_Mutation p.G448R 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 2312688 2312688 G A TGM3 Silent p.G458G 0.41 TCGA-D3-A8GI-06 20 23345648 23345648 G A GZF1 Missense_Mutation p.E210K 0.38 tolerated(0.24) benign(0.309) TCGA-D3-A8GI-06 20 23421076 23421076 G A CSTL1 Missense_Mutation p.D58N 0.39 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 20 23476595 23476595 C T CST8 3'UTR 0.37 TCGA-D3-A8GI-06 20 23476616 23476616 G A CST8 3'UTR 0.41 TCGA-D3-A8GI-06 20 24523683 24523683 A C SYNDIG1 5'UTR 0.29 TCGA-D3-A8GI-06 20 24524006 24524006 C T SYNDIG1 Silent p.I91I 0.48 TCGA-D3-A8GI-06 20 25056907 25056907 C T VSX1 Missense_Mutation p.G363E 0.33 tolerated(0.08) benign(0.142) TCGA-D3-A8GI-06 20 25422412 25422412 G C GINS1 Missense_Mutation p.Q174H 0.38 tolerated(0.2) benign(0.017) TCGA-D3-A8GI-06 20 2604936 2604936 G A TMC2 Missense_Mutation p.D734N 0.42 deleterious(0.01) benign(0.082) TCGA-D3-A8GI-06 20 2605001 2605001 C T TMC2 Silent p.L755L 0.31 TCGA-D3-A8GI-06 20 2779540 2779540 C T CPXM1 Splice_Site p.X58_splice 0.39 TCGA-D3-A8GI-06 20 29891117 29891117 C T DEFB116 Silent p.L69L 0.27 TCGA-D3-A8GI-06 20 30038000 30038000 G A DEFB123 3'UTR 0.30 TCGA-D3-A8GI-06 20 30193923 30193923 C T ID1 3'UTR 0.22 TCGA-D3-A8GI-06 20 30432685 30432685 G A FOXS1 Missense_Mutation p.P221S 0.37 tolerated(0.1) benign(0.013) TCGA-D3-A8GI-06 20 30507684 30507684 G A TTLL9 Silent p.G174G 0.27 TCGA-D3-A8GI-06 20 30530809 30530809 G A TTLL9 Silent p.K435K 0.24 TCGA-D3-A8GI-06 20 30661153 30661153 G A HCK Missense_Mutation p.G72E 0.25 tolerated(0.3) benign(0.003) TCGA-D3-A8GI-06 20 30672264 30672264 G A HCK Silent p.E251E 0.28 TCGA-D3-A8GI-06 20 30672267 30672267 A T HCK Missense_Mutation p.K252N 0.33 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GI-06 20 30749105 30749105 C T TM9SF4 Silent p.F572F 0.32 TCGA-D3-A8GI-06 20 30789982 30789982 G A PLAGL2 5'UTR 0.29 TCGA-D3-A8GI-06 20 3090977 3090977 G A UBOX5 Intron 0.55 TCGA-D3-A8GI-06 20 31372641 31372641 C T DNMT3B Silent p.T94T 0.23 TCGA-D3-A8GI-06 20 31424493 31424493 C T MAPRE1 Silent p.F107F 0.25 TCGA-D3-A8GI-06 20 31598888 31598888 C T BPIFB2 Silent p.F56F 0.28 TCGA-D3-A8GI-06 20 31622596 31622596 C T BPIFB6 Silent p.I110I 0.23 TCGA-D3-A8GI-06 20 31682953 31682953 C T BPIFB4 Silent p.I464I 0.25 TCGA-D3-A8GI-06 20 3171287 3171287 G A DDRGK1 3'UTR 0.41 TCGA-D3-A8GI-06 20 31984706 31984706 G A CDK5RAP1 Silent p.F55F 0.30 TCGA-D3-A8GI-06 20 32265089 32265089 G A E2F1 Silent p.F296F 0.22 TCGA-D3-A8GI-06 20 33296618 33296618 C T TP53INP2 Silent p.F25F 0.23 TCGA-D3-A8GI-06 20 33329095 33329095 G A NCOA6 Silent p.F1655F 0.26 TCGA-D3-A8GI-06 20 33337817 33337817 C T NCOA6 Silent p.Q727Q 0.24 TCGA-D3-A8GI-06 20 33568415 33568415 C T MYH7B Missense_Mutation p.P168L 0.27 probably_damaging(1) TCGA-D3-A8GI-06 20 33568485 33568485 C T MYH7B Silent p.S191S 0.27 TCGA-D3-A8GI-06 20 33577856 33577856 G A MYH7B Missense_Mutation p.D645N 0.28 probably_damaging(0.999) TCGA-D3-A8GI-06 20 33578085 33578085 C T MYH7B Missense_Mutation p.S692L 0.31 probably_damaging(0.999) TCGA-D3-A8GI-06 20 33875147 33875147 G A FAM83C Silent p.L479L 0.61 TCGA-D3-A8GI-06 20 33875577 33875577 G A FAM83C Silent p.V335V 0.24 TCGA-D3-A8GI-06 20 33935011 33935011 G A UQCC1 Missense_Mutation p.H177Y 0.31 tolerated(0.12) benign(0.115) TCGA-D3-A8GI-06 20 34022350 34022350 C T GDF5 Missense_Mutation p.G288E 0.24 tolerated(0.98) benign(0.041) TCGA-D3-A8GI-06 20 34025384 34025384 C T GDF5 Missense_Mutation p.G109R 0.31 tolerated_low_confidence(0.1) benign(0.001) TCGA-D3-A8GI-06 20 34130109 34130109 C T ERGIC3 Silent p.F42F 0.33 TCGA-D3-A8GI-06 20 34220447 34220447 G A CPNE1 Silent p.L106L 0.30 TCGA-D3-A8GI-06 20 34240962 34240962 A G RBM12 Silent p.G761G 0.25 TCGA-D3-A8GI-06 20 34535528 34535528 C T PHF20 Silent p.I1006I 0.53 TCGA-D3-A8GI-06 20 34843643 34843643 C T AAR2 Silent p.L377L 0.39 TCGA-D3-A8GI-06 20 35350139 35350139 G A NDRG3 5'UTR 0.61 TCGA-D3-A8GI-06 20 3564574 3564574 C T ATRN Missense_Mutation p.P932S 0.48 deleterious(0.05) probably_damaging(0.983) TCGA-D3-A8GI-06 20 35742455 35742455 C T MROH8 Missense_Mutation p.V904I 0.20 tolerated(0.24) possibly_damaging(0.47) TCGA-D3-A8GI-06 20 35757495 35757495 C T MROH8 Silent p.R602R 0.64 TCGA-D3-A8GI-06 20 35776242 35776242 T G MROH8 Missense_Mutation p.E409A 0.23 deleterious(0.02) benign(0.164) TCGA-D3-A8GI-06 20 3655474 3655474 C T ADAM33 Missense_Mutation p.R119Q 0.38 tolerated(0.33) benign(0.103) TCGA-D3-A8GI-06 20 36560122 36560122 C T VSTM2L Silent p.S69S 0.27 TCGA-D3-A8GI-06 20 36841891 36841891 C T KIAA1755 Silent p.L1052L 0.33 TCGA-D3-A8GI-06 20 3723030 3723030 G A HSPA12B Missense_Mutation p.D81N 0.47 tolerated(0.08) benign(0.083) TCGA-D3-A8GI-06 20 3740749 3740749 G A C20orf27 5'UTR 0.43 TCGA-D3-A8GI-06 20 39728792 39728792 C T TOP1 Missense_Mutation p.P358S 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 20 40049550 40049550 G A CHD6 Nonsense_Mutation p.Q1909* 0.31 TCGA-D3-A8GI-06 20 40050562 40050562 G A CHD6 Silent p.L1571L 0.20 TCGA-D3-A8GI-06 20 40113227 40113227 G A CHD6 Silent p.I674I 0.26 TCGA-D3-A8GI-06 20 40714431 40714431 G A PTPRT Silent p.F1303F 0.62 TCGA-D3-A8GI-06 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.56 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 20 40733260 40733260 G A PTPRT Silent p.I1163I 0.25 TCGA-D3-A8GI-06 20 40747067 40747067 G A PTPRT Silent p.V986V 0.25 TCGA-D3-A8GI-06 20 40790031 40790031 C T PTPRT Missense_Mutation p.M881I 0.34 deleterious(0) benign(0.109) TCGA-D3-A8GI-06 20 40828016 40828016 C T PTPRT Silent p.K785K 0.29 TCGA-D3-A8GI-06 20 40864899 40864899 C T PTPRT Splice_Site p.X771_splice 0.61 TCGA-D3-A8GI-06 20 41385263 41385263 C T PTPRT Missense_Mutation p.R233K 0.29 tolerated(0.52) benign(0) TCGA-D3-A8GI-06 20 42165094 42165094 C T L3MBTL1 Silent p.F701F 0.34 TCGA-D3-A8GI-06 20 42203588 42203588 C T SGK2 Nonsense_Mutation p.R273* 0.27 TCGA-D3-A8GI-06 20 42694515 42694515 G A TOX2 Missense_Mutation p.R375Q 0.27 tolerated(0.32) probably_damaging(0.982) TCGA-D3-A8GI-06 20 42907862 42907862 C T GDAP1L1 Silent p.F342F 0.26 TCGA-D3-A8GI-06 20 42935681 42935681 G A FITM2 Missense_Mutation p.P125S 0.27 tolerated(0.44) benign(0.01) TCGA-D3-A8GI-06 20 43135531 43135531 G A SERINC3 Silent p.F240F 0.26 TCGA-D3-A8GI-06 20 43379161 43379161 C T KCNK15 Silent p.F225F 0.30 TCGA-D3-A8GI-06 20 43535175 43535175 C T YWHAB 3'UTR 0.20 TCGA-D3-A8GI-06 20 43752432 43752432 C T WFDC12 3'UTR 0.22 TCGA-D3-A8GI-06 20 43804768 43804768 C T PI3 Missense_Mutation p.P116S 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A8GI-06 20 43836526 43836526 C T SEMG1 Silent p.L196L 0.31 TCGA-D3-A8GI-06 20 43836687 43836687 C T SEMG1 Missense_Mutation p.S250F 0.22 tolerated(0.2) benign(0.313) TCGA-D3-A8GI-06 20 43851270 43851270 C T SEMG2 Missense_Mutation p.H333Y 0.29 tolerated(0.26) benign(0.403) TCGA-D3-A8GI-06 20 43881000 43881000 G A SLPI 3'UTR 0.66 TCGA-D3-A8GI-06 20 43881647 43881647 C T SLPI Silent p.V130V 0.23 TCGA-D3-A8GI-06 20 43881776 43881776 C T SLPI Silent p.G87G 0.22 TCGA-D3-A8GI-06 20 44050042 44050042 C T PIGT Silent p.F351F 0.38 TCGA-D3-A8GI-06 20 44313462 44313462 C T WFDC10B 3'UTR 0.33 TCGA-D3-A8GI-06 20 44404064 44404064 G A WFDC3 Missense_Mutation p.S224F 0.29 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-D3-A8GI-06 20 44596965 44596965 G A ZNF335 Missense_Mutation p.A160V 0.29 deleterious(0) benign(0.26) TCGA-D3-A8GI-06 20 44676639 44676639 G A SLC12A5 Missense_Mutation p.D666N 0.29 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 20 44682225 44682225 G A SLC12A5 Silent p.R875R 0.23 TCGA-D3-A8GI-06 20 44869871 44869871 T G CDH22 Missense_Mutation p.D94A 0.74 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 20 45129947 45129947 G A ZNF334 Silent p.S677S 0.29 TCGA-D3-A8GI-06 20 45131464 45131464 C T ZNF334 Missense_Mutation p.E172K 0.32 tolerated(0.08) benign(0.257) TCGA-D3-A8GI-06 20 45132877 45132877 C T ZNF334 Missense_Mutation p.E73K 0.21 tolerated(0.08) benign(0.039) TCGA-D3-A8GI-06 20 45839290 45839290 G A ZMYND8 3'Flank 0.25 TCGA-D3-A8GI-06 20 45905206 45905206 A T ZMYND8 Silent p.I444I 0.25 TCGA-D3-A8GI-06 20 46264312 46264312 C T NCOA3 Silent p.S453S 0.29 TCGA-D3-A8GI-06 20 46281677 46281677 C T NCOA3 Missense_Mutation p.S1375F 0.27 deleterious(0.03) possibly_damaging(0.779) TCGA-D3-A8GI-06 20 46288166 46288166 C T SULF2 Missense_Mutation p.M853I 0.30 tolerated_low_confidence(0.18) benign(0.01) TCGA-D3-A8GI-06 20 46307464 46307464 C T SULF2 Silent p.G383G 0.39 TCGA-D3-A8GI-06 20 46318928 46318928 C T SULF2 Missense_Mutation p.G227S 0.20 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 20 47273611 47273611 G A PREX1 Missense_Mutation p.P697L 0.29 tolerated(0.15) benign(0.022) TCGA-D3-A8GI-06 20 47621706 47621706 C T ARFGEF2 Missense_Mutation p.R1178C 0.30 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 20 47628500 47628500 C T ARFGEF2 Missense_Mutation p.S1266F 0.29 deleterious(0.03) possibly_damaging(0.684) TCGA-D3-A8GI-06 20 47839533 47839533 C T DDX27 Nonsense_Mutation p.R125* 0.31 TCGA-D3-A8GI-06 20 47846838 47846838 C T DDX27 Missense_Mutation p.S359F 0.28 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 20 48098467 48098467 G A KCNB1 Missense_Mutation p.S184F 0.34 tolerated(0.05) probably_damaging(0.979) TCGA-D3-A8GI-06 20 48431588 48431588 C T SLC9A8 Missense_Mutation p.H24Y 0.33 tolerated_low_confidence(0.18) benign(0.022) TCGA-D3-A8GI-06 20 48604602 48604602 G A SNAI1 3'UTR 0.33 TCGA-D3-A8GI-06 20 49367046 49367046 C T PARD6B 3'UTR 0.31 TCGA-D3-A8GI-06 20 50139908 50139908 G A NFATC2 Missense_Mutation p.P291L 0.34 tolerated(0.36) benign(0) TCGA-D3-A8GI-06 20 50226659 50226659 G A ATP9A Nonsense_Mutation p.Q873* 0.34 TCGA-D3-A8GI-06 20 50400731 50400731 G A SALL4 3'UTR 0.30 TCGA-D3-A8GI-06 20 50408823 50408823 G A SALL4 Missense_Mutation p.R67C 0.40 tolerated(0.05) probably_damaging(0.998) TCGA-D3-A8GI-06 20 51871891 51871891 G A TSHZ2 Missense_Mutation p.D632N 0.34 tolerated(0.12) benign(0.04) TCGA-D3-A8GI-06 20 52645109 52645109 C T BCAS1 Missense_Mutation p.G182E 0.34 tolerated(0.87) probably_damaging(0.994) TCGA-D3-A8GI-06 20 5282842 5282842 G A PROKR2 Silent p.F333F 0.42 TCGA-D3-A8GI-06 20 54578975 54578975 C T CBLN4 Missense_Mutation p.E85K 0.25 deleterious(0.01) probably_damaging(0.95) TCGA-D3-A8GI-06 20 54579090 54579090 C T CBLN4 Silent p.S46S 0.23 TCGA-D3-A8GI-06 20 55758959 55758959 G A BMP7 Silent p.P259P 0.33 TCGA-D3-A8GI-06 20 55913344 55913344 C T SPO11 Missense_Mutation p.P253S 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 56078502 56078502 C T CTCFL Silent p.A610A 0.32 TCGA-D3-A8GI-06 20 56137788 56137788 C T PCK1 Missense_Mutation p.P148L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 56137829 56137829 G A PCK1 Missense_Mutation p.D162N 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 20 56138710 56138710 G A PCK1 Missense_Mutation p.M296I 0.27 tolerated(0.13) benign(0.416) TCGA-D3-A8GI-06 20 56139604 56139604 C T PCK1 Missense_Mutation p.A418V 0.33 deleterious(0) benign(0.021) TCGA-D3-A8GI-06 20 56191450 56191450 C T ZBP1 Missense_Mutation p.E37K 0.33 tolerated(0.37) benign(0.126) TCGA-D3-A8GI-06 20 56726044 56726044 C T C20orf85 Silent p.T8T 0.25 TCGA-D3-A8GI-06 20 56730575 56730575 C T C20orf85 Missense_Mutation p.P68S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 57599701 57599701 G A TUBB1 Missense_Mutation p.E407K 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A8GI-06 20 57769034 57769034 C T ZNF831 Missense_Mutation p.P987L 0.32 tolerated(0.77) benign(0) TCGA-D3-A8GI-06 20 57769082 57769082 G A ZNF831 Missense_Mutation p.S1003N 0.24 tolerated(0.19) benign(0.035) TCGA-D3-A8GI-06 20 57771022 57771022 G A ZNF831 Silent p.G1279G 0.28 TCGA-D3-A8GI-06 20 57829649 57829649 C T ZNF831 Missense_Mutation p.P1629S 0.31 tolerated(0.25) benign(0.141) TCGA-D3-A8GI-06 20 57829722 57829722 G A ZNF831 Missense_Mutation p.G1653E 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 20 58564096 58564096 G A CDH26 Silent p.V387V 0.27 TCGA-D3-A8GI-06 20 58567483 58567483 C T CDH26 Missense_Mutation p.S445F 0.28 deleterious(0) probably_damaging(0.931) TCGA-D3-A8GI-06 20 58587851 58587851 C T CDH26 3'UTR 0.21 TCGA-D3-A8GI-06 20 6021533 6021533 C T LRRN4 3'UTR 0.37 TCGA-D3-A8GI-06 20 60773902 60773902 C T MTG2 Silent p.A227A 0.25 TCGA-D3-A8GI-06 20 61431112 61431112 C T MRGBP 3'UTR 0.50 TCGA-D3-A8GI-06 20 61444414 61444414 G A OGFR Missense_Mutation p.G483R 0.36 tolerated(0.67) benign(0.001) TCGA-D3-A8GI-06 20 61445014 61445014 C T OGFR 3'UTR 0.31 TCGA-D3-A8GI-06 20 61512446 61512446 G A DIDO1 Missense_Mutation p.S1621L 0.28 benign(0.005) TCGA-D3-A8GI-06 20 61537260 61537260 A C DIDO1 Missense_Mutation p.S523A 0.27 benign(0.114) TCGA-D3-A8GI-06 20 61542496 61542496 C T DIDO1 Missense_Mutation p.D157N 0.23 probably_damaging(0.998) TCGA-D3-A8GI-06 20 61938898 61938898 G A COL20A1 Missense_Mutation p.D185N 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 61952411 61952411 C T COL20A1 Missense_Mutation p.S1067F 0.28 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GI-06 20 62164964 62164964 C T PTK6 Missense_Mutation p.E204K 0.21 deleterious(0.03) possibly_damaging(0.674) TCGA-D3-A8GI-06 20 62173627 62173627 C T SRMS Missense_Mutation p.G279S 0.29 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 20 62192570 62192570 G A HELZ2 Silent p.I2337I 0.26 TCGA-D3-A8GI-06 20 62196126 62196126 G A HELZ2 Missense_Mutation p.A1350V 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 62198210 62198210 G A HELZ2 Missense_Mutation p.S834F 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 62422068 62422068 G A ZBTB46 Missense_Mutation p.R15W 0.52 deleterious(0.02) possibly_damaging(0.772) TCGA-D3-A8GI-06 20 62422069 62422069 G A ZBTB46 Silent p.Y14Y 0.49 TCGA-D3-A8GI-06 20 62493402 62493402 G A ABHD16B Missense_Mutation p.G170E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 62608374 62608374 G A SAMD10 Missense_Mutation p.P132L 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 62664424 62664424 C T PRPF6 3'UTR 0.14 TCGA-D3-A8GI-06 20 62697864 62697864 C T TCEA2 Silent p.A36A 0.18 TCGA-D3-A8GI-06 20 62737522 62737522 G A NPBWR2 Silent p.F221F 0.23 TCGA-D3-A8GI-06 20 6750866 6750866 G A BMP2 Silent p.R31R 0.50 TCGA-D3-A8GI-06 20 8709811 8709811 C T PLCB1 Silent p.F626F 0.43 TCGA-D3-A8GI-06 20 9416290 9416290 G A PLCB4 Missense_Mutation p.E858K 0.40 deleterious(0.03) possibly_damaging(0.716) TCGA-D3-A8GI-06 20 9424875 9424875 G A PLCB4 Silent p.K943K 0.39 TCGA-D3-A8GI-06 20 9523313 9523313 G A PAK7 Missense_Mutation p.P642S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 9523314 9523314 G A PAK7 Silent p.P641P 0.42 TCGA-D3-A8GI-06 20 9525051 9525051 G A PAK7 Missense_Mutation p.P612S 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 20 9546931 9546931 G A PAK7 Missense_Mutation p.S364L 0.38 tolerated(0.37) benign(0) TCGA-D3-A8GI-06 20 9560942 9560942 G A PAK7 Silent p.P280P 0.36 TCGA-D3-A8GI-06 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.48 tolerated(0.21) benign(0.053) TCGA-D3-A8GI-06 21 10862815 10862815 G A IGHV1OR21-1 Silent p.V37V 0.14 TCGA-D3-A8GI-06 21 10863005 10863005 G A IGHV1OR21-1 Missense_Mutation p.E101K 0.14 deleterious(0) benign(0.121) TCGA-D3-A8GI-06 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.20 deleterious(0.03) possibly_damaging(0.883) TCGA-D3-A8GI-06 21 10921967 10921967 G A TPTE Silent p.F352F 0.15 TCGA-D3-A8GI-06 21 10951282 10951282 G A TPTE Nonsense_Mutation p.R144* 0.19 TCGA-D3-A8GI-06 21 10951353 10951353 A T TPTE Missense_Mutation p.L120H 0.21 tolerated(0.24) benign(0.014) TCGA-D3-A8GI-06 21 10998255 10998255 C T TPTE RNA 0.20 TCGA-D3-A8GI-06 21 11012955 11012955 G A TPTE RNA 0.08 TCGA-D3-A8GI-06 21 11021175 11021175 C T BAGE2 RNA 0.07 TCGA-D3-A8GI-06 21 11026802 11026802 C T BAGE2 RNA 0.16 TCGA-D3-A8GI-06 21 11029651 11029651 C T BAGE2 RNA 0.09 TCGA-D3-A8GI-06 21 11038828 11038828 G A BAGE2 RNA 0.10 TCGA-D3-A8GI-06 21 11038949 11038949 G A BAGE2 RNA 0.11 TCGA-D3-A8GI-06 21 11038958 11038958 G A BAGE2 RNA 0.06 TCGA-D3-A8GI-06 21 11039124 11039124 C T BAGE2 RNA 0.04 TCGA-D3-A8GI-06 21 11039138 11039138 G A BAGE2 RNA 0.07 TCGA-D3-A8GI-06 21 14417538 14417538 G A RNU6-614P 5'Flank 0.08 TCGA-D3-A8GI-06 21 15326384 15326384 C T ANKRD20A11P Intron 0.39 TCGA-D3-A8GI-06 21 15755500 15755500 C T HSPA13 5'UTR 0.33 TCGA-D3-A8GI-06 21 15870880 15870880 C T SAMSN1 Missense_Mutation p.E336K 0.42 deleterious(0.01) possibly_damaging(0.792) TCGA-D3-A8GI-06 21 18933781 18933781 C T CXADR Missense_Mutation p.H274Y 0.47 tolerated(1) benign(0.397) TCGA-D3-A8GI-06 21 18938036 18938036 C T CXADR 3'UTR 0.48 TCGA-D3-A8GI-06 21 19629342 19629342 C T CHODL Missense_Mutation p.H149Y 0.39 deleterious(0.02) probably_damaging(0.98) TCGA-D3-A8GI-06 21 19651332 19651332 G A TMPRSS15 Missense_Mutation p.P905S 0.40 tolerated(0.52) benign(0.004) TCGA-D3-A8GI-06 21 19685268 19685268 C T TMPRSS15 Missense_Mutation p.G720E 0.43 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 21 19725292 19725292 C T TMPRSS15 Missense_Mutation p.E367K 0.43 tolerated(0.17) possibly_damaging(0.876) TCGA-D3-A8GI-06 21 22906878 22906878 C T NCAM2 Missense_Mutation p.P768L 0.44 deleterious(0.02) benign(0.046) TCGA-D3-A8GI-06 21 27134673 27134673 C T GABPA Nonsense_Mutation p.Q267* 0.42 TCGA-D3-A8GI-06 21 30338844 30338844 G A LTN1 Missense_Mutation p.P703S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GI-06 21 31768567 31768567 G A KRTAP13-1 Missense_Mutation p.G55S 0.50 tolerated(0.07) possibly_damaging(0.654) TCGA-D3-A8GI-06 21 31768746 31768746 G A KRTAP13-1 Silent p.S114S 0.46 TCGA-D3-A8GI-06 21 32253709 32253709 G A KRTAP11-1 Silent p.S45S 0.28 TCGA-D3-A8GI-06 21 32639158 32639158 G A TIAM1 Missense_Mutation p.S44L 0.37 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-D3-A8GI-06 21 33340575 33340575 C T HUNK Silent p.F296F 0.48 TCGA-D3-A8GI-06 21 34927505 34927505 C T SON Missense_Mutation p.R1990C 0.46 unknown(0) TCGA-D3-A8GI-06 21 35468456 35468456 C T SLC5A3 Missense_Mutation p.S320F 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 21 36080317 36080317 G A CLIC6 Silent p.T520T 0.40 TCGA-D3-A8GI-06 21 39492469 39492469 G A DSCR4 Silent p.I54I 0.49 TCGA-D3-A8GI-06 21 39795342 39795342 G A ERG Silent p.I133I 0.31 TCGA-D3-A8GI-06 21 41033506 41033506 G A B3GALT5 3'UTR 0.57 TCGA-D3-A8GI-06 21 41301047 41301047 C T PCP4 3'UTR 0.35 TCGA-D3-A8GI-06 21 41384910 41384910 G A DSCAM 3'UTR 0.32 TCGA-D3-A8GI-06 21 41385037 41385037 G A DSCAM Missense_Mutation p.S1988F 0.42 deleterious_low_confidence(0) benign(0.014) TCGA-D3-A8GI-06 21 41427706 41427706 C T DSCAM Missense_Mutation p.D1661N 0.46 tolerated(0.09) probably_damaging(0.972) TCGA-D3-A8GI-06 21 41452109 41452109 C T DSCAM Missense_Mutation p.E1464K 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GI-06 21 41550881 41550881 C T DSCAM Missense_Mutation p.E974K 0.45 tolerated(0.07) benign(0.076) TCGA-D3-A8GI-06 21 41648069 41648069 C T DSCAM Missense_Mutation p.D771N 0.48 tolerated(0.16) benign(0.142) TCGA-D3-A8GI-06 21 41668099 41668099 G A DSCAM Missense_Mutation p.P689S 0.47 deleterious(0) possibly_damaging(0.874) TCGA-D3-A8GI-06 21 41684173 41684173 C T DSCAM Missense_Mutation p.D633N 0.56 tolerated(0.06) probably_damaging(0.992) TCGA-D3-A8GI-06 21 41719812 41719812 G A DSCAM Missense_Mutation p.S332F 0.47 tolerated(0.71) benign(0.022) TCGA-D3-A8GI-06 21 41725504 41725504 G A DSCAM Silent p.T274T 0.55 TCGA-D3-A8GI-06 21 42808946 42808946 C T MX1 Silent p.I101I 0.46 TCGA-D3-A8GI-06 21 42815773 42815773 G A MX1 Missense_Mutation p.E330K 0.50 deleterious(0.01) possibly_damaging(0.473) TCGA-D3-A8GI-06 21 43528411 43528411 G T C21orf128 Missense_Mutation p.L28I 0.41 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-D3-A8GI-06 21 43547878 43547878 C T UMODL1 Silent p.S1337S 0.55 TCGA-D3-A8GI-06 21 43938589 43938589 C T SLC37A1 Missense_Mutation p.R9C 0.58 deleterious(0.02) probably_damaging(0.97) TCGA-D3-A8GI-06 21 44188363 44188363 G A PDE9A Silent p.E474E 0.46 TCGA-D3-A8GI-06 21 45773623 45773623 G A TRPM2 Missense_Mutation p.E14K 0.50 tolerated_low_confidence(0.07) benign(0.017) TCGA-D3-A8GI-06 21 45815369 45815369 C T TRPM2 Missense_Mutation p.R623C 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 21 45821572 45821572 G A TRPM2 Missense_Mutation p.R777K 0.48 tolerated(0.27) benign(0.005) TCGA-D3-A8GI-06 21 45929148 45929148 G A TSPEAR Missense_Mutation p.S563F 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 21 45947184 45947184 G A TSPEAR Silent p.I380I 0.36 TCGA-D3-A8GI-06 21 45978596 45978596 C T KRTAP10-3 Translation_Start_Site p.M1? 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-D3-A8GI-06 21 46020585 46020585 C T KRTAP10-7 Missense_Mutation p.P22S 0.31 deleterious(0) possibly_damaging(0.874) TCGA-D3-A8GI-06 21 46086630 46086630 C T KRTAP12-2 Silent p.V58V 0.36 TCGA-D3-A8GI-06 21 46086706 46086706 G A KRTAP12-2 Missense_Mutation p.S33F 0.30 deleterious(0) probably_damaging(0.939) TCGA-D3-A8GI-06 21 46306109 46306109 C T ITGB2 3'UTR 0.50 TCGA-D3-A8GI-06 21 46323304 46323304 C T ITGB2 Missense_Mutation p.E159K 0.47 tolerated(0.69) benign(0.037) TCGA-D3-A8GI-06 21 46896297 46896298 - C COL18A1 Frame_Shift_Ins p.V460Rfs*18 0.34 TCGA-D3-A8GI-06 21 47337538 47337538 C T PCBP3 Missense_Mutation p.P238S 0.45 deleterious(0.05) probably_damaging(0.91) TCGA-D3-A8GI-06 21 47419602 47419602 C T COL6A1 Missense_Mutation p.P591L 0.29 tolerated(0.24) probably_damaging(0.995) TCGA-D3-A8GI-06 21 47545764 47545764 G A COL6A2 Missense_Mutation p.E679K 0.49 tolerated(0.79) benign(0.094) TCGA-D3-A8GI-06 21 47556853 47556853 G A FTCD Intron 0.32 TCGA-D3-A8GI-06 21 47626664 47626664 G A LSS Missense_Mutation p.P496S 0.28 tolerated(0.68) benign(0.001) TCGA-D3-A8GI-06 21 47642564 47642564 G A LSS Silent p.L136L 0.29 TCGA-D3-A8GI-06 21 47969826 47969826 C T DIP2A Intron 0.53 TCGA-D3-A8GI-06 22 16256638 16256638 C T POTEH 3'UTR 0.08 TCGA-D3-A8GI-06 22 16287928 16287928 C T POTEH 5'UTR 0.36 TCGA-D3-A8GI-06 22 16449525 16449525 G A OR11H1 Missense_Mutation p.P94S 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-D3-A8GI-06 22 17073264 17073264 G A CCT8L2 Silent p.F59F 0.41 TCGA-D3-A8GI-06 22 17119548 17119548 A C TPTEP1 RNA 0.42 TCGA-D3-A8GI-06 22 17280773 17280773 C T XKR3 Silent p.Q159Q 0.35 TCGA-D3-A8GI-06 22 17624015 17624015 G A CECR5 Missense_Mutation p.P182S 0.42 tolerated(0.41) benign(0.011) TCGA-D3-A8GI-06 22 18031816 18031816 C T CECR2 Missense_Mutation p.P1439S 0.32 deleterious_low_confidence(0.05) benign(0.201) TCGA-D3-A8GI-06 22 18300146 18300146 G A MICAL3 Missense_Mutation p.P1761S 0.56 benign(0.006) TCGA-D3-A8GI-06 22 19119302 19119302 G A TSSK2 Silent p.L130L 0.36 TCGA-D3-A8GI-06 22 19119426 19119426 A T TSSK2 Missense_Mutation p.S172C 0.33 deleterious(0) probably_damaging(0.929) TCGA-D3-A8GI-06 22 19221110 19221110 G A CLTCL1 Silent p.F401F 0.36 TCGA-D3-A8GI-06 22 19776453 19776453 C T GNB1L Missense_Mutation p.G255R 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 22 20458718 20458718 C T RIMBP3 Missense_Mutation p.G862R 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 22 20909225 20909225 C T MED15 Missense_Mutation p.P81S 0.35 deleterious(0) unknown(0) TCGA-D3-A8GI-06 22 20920905 20920905 C T MED15 Missense_Mutation p.P281L 0.28 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A8GI-06 22 20936976 20936976 C T MED15 Missense_Mutation p.P451S 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-D3-A8GI-06 22 21174001 21174001 G A PI4KA Silent p.P239P 0.23 TCGA-D3-A8GI-06 22 21328363 21328363 C T AIFM3 Missense_Mutation p.R123C 0.26 deleterious(0.02) possibly_damaging(0.809) TCGA-D3-A8GI-06 22 21363236 21363236 G A AC002472.1 5'Flank 0.17 TCGA-D3-A8GI-06 22 21383503 21383503 G A SLC7A4 Silent p.F583F 0.67 TCGA-D3-A8GI-06 22 21742811 21742811 C T RIMBP3B Missense_Mutation p.S1555F 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 22 22020299 22020299 G A PPIL2 5'UTR 0.84 TCGA-D3-A8GI-06 22 22065182 22065182 G A YPEL1 5'UTR 0.50 TCGA-D3-A8GI-06 22 22324775 22324775 G A TOP3B Missense_Mutation p.L130F 0.60 deleterious(0.01) possibly_damaging(0.835) TCGA-D3-A8GI-06 22 22385609 22385609 C T IGLV4-69 Missense_Mutation p.S33F 0.30 deleterious(0.01) benign(0.341) TCGA-D3-A8GI-06 22 22724365 22724365 C T IGLV7-46 Silent p.L87L 0.27 TCGA-D3-A8GI-06 22 23011092 23011092 G A IGLV3-27 Missense_Mutation p.R52Q 0.67 tolerated(0.58) benign(0.004) TCGA-D3-A8GI-06 22 23047075 23047075 G A IGLV3-22 Missense_Mutation p.R38K 0.21 tolerated(0.47) benign(0.031) TCGA-D3-A8GI-06 22 23090297 23090297 G A IGLV3-16 Missense_Mutation p.R79Q 0.24 deleterious(0.03) possibly_damaging(0.533) TCGA-D3-A8GI-06 22 23114956 23114956 C T IGLV3-12 Silent p.I76I 0.20 TCGA-D3-A8GI-06 22 23243524 23243524 C T IGLC2 3'UTR 0.73 TCGA-D3-A8GI-06 22 23631787 23631787 C T BCR Missense_Mutation p.P896S 0.21 tolerated(0.13) possibly_damaging(0.857) TCGA-D3-A8GI-06 22 23657774 23657774 C T BCR 3'UTR 0.26 TCGA-D3-A8GI-06 22 24085899 24085899 G A ZNF70 3'UTR 0.23 TCGA-D3-A8GI-06 22 24167542 24167542 C T SMARCB1 Missense_Mutation p.T309I 0.59 deleterious(0) probably_damaging(0.965) TCGA-D3-A8GI-06 22 24579086 24579086 G A SUSD2 Silent p.P46P 0.11 TCGA-D3-A8GI-06 22 24581148 24581148 G A SUSD2 Missense_Mutation p.R290Q 0.35 tolerated(0.43) benign(0.107) TCGA-D3-A8GI-06 22 24622199 24622199 G A GGT5 Silent p.A358A 0.47 TCGA-D3-A8GI-06 22 24896173 24896173 G A UPB1 Missense_Mutation p.R68Q 0.23 tolerated(0.79) benign(0) TCGA-D3-A8GI-06 22 25251253 25251253 G A SGSM1 Silent p.V175V 0.57 TCGA-D3-A8GI-06 22 25755818 25755818 G A LRP5L Missense_Mutation p.A81V 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 22 26105895 26105895 C T ADRBK2 Silent p.F453F 0.24 TCGA-D3-A8GI-06 22 26157027 26157027 C T MYO18B 5'UTR 0.18 TCGA-D3-A8GI-06 22 26224902 26224902 G A MYO18B Silent p.R982R 0.22 TCGA-D3-A8GI-06 22 26400774 26400774 G A MYO18B Silent p.R2141R 0.40 TCGA-D3-A8GI-06 22 27026402 27026402 C T CRYBA4 Missense_Mutation p.S181F 0.34 deleterious(0) possibly_damaging(0.824) TCGA-D3-A8GI-06 22 28195736 28195736 G A MN1 Missense_Mutation p.P266S 0.11 probably_damaging(0.986) TCGA-D3-A8GI-06 22 28195926 28195926 G C MN1 Silent p.S202S 0.63 TCGA-D3-A8GI-06 22 29456405 29456405 C T C22orf31 Missense_Mutation p.E144K 0.34 tolerated_low_confidence(0.4) benign(0.024) TCGA-D3-A8GI-06 22 29709903 29709903 G A RASL10A Missense_Mutation p.P98L 0.47 tolerated(0.66) benign(0.122) TCGA-D3-A8GI-06 22 29727833 29727833 G A AP1B1 Silent p.S794S 0.18 TCGA-D3-A8GI-06 22 29754928 29754928 G A AP1B1 Silent p.A104A 0.23 TCGA-D3-A8GI-06 22 29834853 29834853 C G RFPL1 Missense_Mutation p.P25A 0.34 tolerated(0.22) benign(0.055) TCGA-D3-A8GI-06 22 29885118 29885118 G A NEFH Missense_Mutation p.G497R 0.41 tolerated(0.23) unknown(0) TCGA-D3-A8GI-06 22 30067837 30067837 G A NF2 Missense_Mutation p.R341Q 0.25 deleterious(0.01) possibly_damaging(0.722) TCGA-D3-A8GI-06 22 30124728 30124728 G A CABP7 Nonsense_Mutation p.W121* 0.45 TCGA-D3-A8GI-06 22 30163495 30163495 C T UQCR10 Silent p.F36F 0.64 TCGA-D3-A8GI-06 22 30416356 30416356 C T MTMR3 Missense_Mutation p.S903F 0.42 deleterious_low_confidence(0.04) benign(0.235) TCGA-D3-A8GI-06 22 30494954 30494954 G A HORMAD2 Silent p.E55E 0.29 TCGA-D3-A8GI-06 22 30700625 30700625 G A TBC1D10A Silent p.L75L 0.28 TCGA-D3-A8GI-06 22 30824461 30824461 C T MTFP1 Silent p.F147F 0.34 TCGA-D3-A8GI-06 22 30824731 30824731 C T MTFP1 3'UTR 0.14 TCGA-D3-A8GI-06 22 30891402 30891402 G A SEC14L4 Missense_Mutation p.L88F 0.22 tolerated(0.21) benign(0.053) TCGA-D3-A8GI-06 22 30951515 30951515 G A GAL3ST1 Missense_Mutation p.P233S 0.39 deleterious(0.05) probably_damaging(0.995) TCGA-D3-A8GI-06 22 30951599 30951599 C T GAL3ST1 Missense_Mutation p.D205N 0.21 tolerated(0.75) benign(0.064) TCGA-D3-A8GI-06 22 30951824 30951824 G A GAL3ST1 Missense_Mutation p.R130W 0.21 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GI-06 22 31011601 31011601 C T TCN2 Missense_Mutation p.S256F 0.27 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 22 31022526 31022526 C T TCN2 3'UTR 0.29 TCGA-D3-A8GI-06 22 31522701 31522701 C T INPP5J Silent p.F128F 0.38 TCGA-D3-A8GI-06 22 31656015 31656015 C T LIMK2 Missense_Mutation p.S147F 0.66 deleterious(0) possibly_damaging(0.883) TCGA-D3-A8GI-06 22 32239796 32239796 C T DEPDC5 Silent p.F924F 0.35 TCGA-D3-A8GI-06 22 32302578 32302578 C T DEPDC5 3'UTR 0.32 TCGA-D3-A8GI-06 22 32352475 32352475 T C YWHAH Missense_Mutation p.V146A 0.24 tolerated_low_confidence(0.95) benign(0.383) TCGA-D3-A8GI-06 22 32506114 32506114 G A SLC5A1 Missense_Mutation p.E637K 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A8GI-06 22 32587278 32587278 C T RFPL2 Silent p.R206R 0.61 TCGA-D3-A8GI-06 22 32788304 32788304 A G RTCB Missense_Mutation p.F445L 0.43 tolerated(0.59) benign(0.005) TCGA-D3-A8GI-06 22 32810203 32810203 C T BPIFC 3'UTR 0.22 TCGA-D3-A8GI-06 22 33260919 33260919 G A SYN3 Missense_Mutation p.P232S 0.63 tolerated(0.05) unknown(0) TCGA-D3-A8GI-06 22 35463218 35463218 G A ISX Missense_Mutation p.M46I 0.24 tolerated(0.21) benign(0.001) TCGA-D3-A8GI-06 22 35480391 35480391 C T ISX Nonsense_Mutation p.Q133* 0.27 TCGA-D3-A8GI-06 22 35719164 35719164 C T TOM1 Silent p.L120L 0.33 TCGA-D3-A8GI-06 22 35719514 35719514 C T TOM1 Missense_Mutation p.S131L 0.25 deleterious(0.01) benign(0.063) TCGA-D3-A8GI-06 22 36556851 36556851 G A APOL3 Missense_Mutation p.P30L 0.18 possibly_damaging(0.713) TCGA-D3-A8GI-06 22 36556852 36556852 G A APOL3 Missense_Mutation p.P30S 0.19 possibly_damaging(0.641) TCGA-D3-A8GI-06 22 36889723 36889723 G A FOXRED2 Silent p.F584F 0.22 TCGA-D3-A8GI-06 22 36900267 36900267 G A FOXRED2 Silent p.T309T 0.21 TCGA-D3-A8GI-06 22 36908591 36908591 G A EIF3D Missense_Mutation p.A422V 0.25 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GI-06 22 37098568 37098568 G A CACNG2 Silent p.F18F 0.25 TCGA-D3-A8GI-06 22 37209796 37209796 G A PVALB Silent p.F66F 0.40 TCGA-D3-A8GI-06 22 37319377 37319377 C T CSF2RB Silent p.L56L 0.67 TCGA-D3-A8GI-06 22 37326514 37326514 C T CSF2RB Silent p.V272V 0.23 TCGA-D3-A8GI-06 22 37387235 37387235 C T TEX33 Silent p.K276K 0.66 TCGA-D3-A8GI-06 22 37398062 37398062 G A TEX33 Missense_Mutation p.S102L 0.24 tolerated(0.18) benign(0) TCGA-D3-A8GI-06 22 37406988 37406988 C T TST 3'UTR 0.22 TCGA-D3-A8GI-06 22 37524407 37524407 C T IL2RB Missense_Mutation p.R462K 0.68 tolerated(0.45) benign(0.008) TCGA-D3-A8GI-06 22 37528469 37528469 C T IL2RB Silent p.S286S 0.65 TCGA-D3-A8GI-06 22 37603033 37603033 C T SSTR3 Nonsense_Mutation p.W270* 0.26 TCGA-D3-A8GI-06 22 37770285 37770285 C T ELFN2 Silent p.K430K 0.39 TCGA-D3-A8GI-06 22 37891801 37891801 C T CARD10 Missense_Mutation p.D757N 0.61 deleterious(0.01) probably_damaging(0.974) TCGA-D3-A8GI-06 22 38016295 38016295 C T GGA1 Silent p.L118L 0.39 TCGA-D3-A8GI-06 22 38027095 38027095 C T GGA1 Missense_Mutation p.S506F 0.72 deleterious(0) possibly_damaging(0.659) TCGA-D3-A8GI-06 22 38087346 38087346 C T NOL12 3'UTR 0.24 TCGA-D3-A8GI-06 22 38119603 38119603 G A TRIOBP Missense_Mutation p.R347Q 0.66 tolerated_low_confidence(0.16) possibly_damaging(0.866) TCGA-D3-A8GI-06 22 38120354 38120354 C T TRIOBP Silent p.N597N 0.23 TCGA-D3-A8GI-06 22 38122247 38122247 C T TRIOBP Silent p.S1228S 0.72 TCGA-D3-A8GI-06 22 38219603 38219603 C T GALR3 Silent p.L64L 0.73 TCGA-D3-A8GI-06 22 38341060 38341060 C T C22orf23 Missense_Mutation p.R157Q 0.22 deleterious(0.02) possibly_damaging(0.499) TCGA-D3-A8GI-06 22 38824164 38824164 G A KCNJ4 5'UTR 0.28 TCGA-D3-A8GI-06 22 38934409 38934409 G A DMC1 Silent p.I222I 0.23 TCGA-D3-A8GI-06 22 39387400 39387400 C T APOBEC3B Missense_Mutation p.P263S 0.19 tolerated(0.79) benign(0.004) TCGA-D3-A8GI-06 22 39445586 39445586 G A APOBEC3F Silent p.Q241Q 0.14 TCGA-D3-A8GI-06 22 39772066 39772066 C T SYNGR1 Missense_Mutation p.A116V 0.28 deleterious(0.02) probably_damaging(0.951) TCGA-D3-A8GI-06 22 39918192 39918192 C T ATF4 Missense_Mutation p.P214L 0.24 tolerated(0.51) benign(0.147) TCGA-D3-A8GI-06 22 40075775 40075775 G A CACNA1I Missense_Mutation p.E1815K 0.49 deleterious(0) benign(0.292) TCGA-D3-A8GI-06 22 40696576 40696576 C T TNRC6B Missense_Mutation p.P1276S 0.12 tolerated(0.64) possibly_damaging(0.52) TCGA-D3-A8GI-06 22 40802634 40802634 C T SGSM3 Silent p.L385L 0.17 TCGA-D3-A8GI-06 22 40816946 40816946 G A MKL1 Silent p.I262I 0.52 TCGA-D3-A8GI-06 22 41320449 41320449 C T XPNPEP3 Silent p.L440L 0.27 TCGA-D3-A8GI-06 22 41895823 41895823 C T ACO2 Missense_Mutation p.H44Y 0.63 tolerated_low_confidence(0.06) benign(0.034) TCGA-D3-A8GI-06 22 42148605 42148605 C T MEI1 Silent p.S601S 0.16 TCGA-D3-A8GI-06 22 42296339 42296339 C T SREBF2 Missense_Mutation p.P915L 0.58 tolerated(0.1) benign(0.394) TCGA-D3-A8GI-06 22 42524283 42524283 C T CYP2D6 Missense_Mutation p.A246T 0.30 tolerated(0.26) benign(0.119) TCGA-D3-A8GI-06 22 42896598 42896598 G A SERHL RNA 0.45 TCGA-D3-A8GI-06 22 43015895 43015895 G A CYB5R3 Missense_Mutation p.P297S 0.50 tolerated(0.14) benign(0.057) TCGA-D3-A8GI-06 22 43089366 43089366 G A A4GALT Missense_Mutation p.L198F 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 22 43455480 43455480 G A TTLL1 Silent p.L267L 0.30 TCGA-D3-A8GI-06 22 44067901 44067901 T A EFCAB6 Missense_Mutation p.K531I 0.27 deleterious(0.04) probably_damaging(0.919) TCGA-D3-A8GI-06 22 44892606 44892606 G A LDOC1L 3'UTR 0.24 TCGA-D3-A8GI-06 22 45127670 45127670 C T PRR5 Missense_Mutation p.P151L 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 22 45127671 45127671 C T PRR5 Silent p.P151P 0.22 TCGA-D3-A8GI-06 22 45689072 45689072 C T UPK3A Silent p.Y194Y 0.22 TCGA-D3-A8GI-06 22 45821953 45821953 C T RIBC2 Silent p.S262S 0.29 TCGA-D3-A8GI-06 22 45959101 45959101 C A FBLN1 Intron 0.24 TCGA-D3-A8GI-06 22 45996260 45996260 C T FBLN1 Silent p.V682V 0.21 TCGA-D3-A8GI-06 22 46654136 46654136 C T PKDREJ Missense_Mutation p.R1695K 0.26 tolerated(0.56) benign(0.313) TCGA-D3-A8GI-06 22 46656456 46656456 C T PKDREJ Missense_Mutation p.E922K 0.40 tolerated(0.19) possibly_damaging(0.529) TCGA-D3-A8GI-06 22 46656824 46656824 C T PKDREJ Missense_Mutation p.R799Q 0.45 tolerated(0.38) benign(0.005) TCGA-D3-A8GI-06 22 46657455 46657455 C T PKDREJ Missense_Mutation p.D589N 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-D3-A8GI-06 22 46657456 46657456 C T PKDREJ Silent p.R588R 0.19 TCGA-D3-A8GI-06 22 46768905 46768905 G A CELSR1 Missense_Mutation p.T2545I 0.64 deleterious(0.03) possibly_damaging(0.899) TCGA-D3-A8GI-06 22 46930004 46930004 G A CELSR1 Missense_Mutation p.R1022C 0.30 tolerated(0.15) benign(0.022) TCGA-D3-A8GI-06 22 50316091 50316091 G A CRELD2 Missense_Mutation p.A247T 0.23 deleterious(0.02) benign(0.206) TCGA-D3-A8GI-06 22 50521593 50521593 G A MLC1 Silent p.L63L 0.28 TCGA-D3-A8GI-06 22 50528909 50528909 C T MOV10L1 Intron 0.36 TCGA-D3-A8GI-06 22 50555590 50555590 C T MOV10L1 Missense_Mutation p.P422S 0.63 tolerated(0.79) benign(0.023) TCGA-D3-A8GI-06 22 50609327 50609327 C G PANX2 Missense_Mutation p.I56M 0.82 tolerated(0.07) benign(0.3) TCGA-D3-A8GI-06 22 50728901 50728901 G A PLXNB2 Missense_Mutation p.A38V 0.32 tolerated(1) benign(0.02) TCGA-D3-A8GI-06 22 50750477 50750477 G A DENND6B 3'UTR 0.39 TCGA-D3-A8GI-06 22 50750783 50750783 G A DENND6B Missense_Mutation p.R542C 0.20 deleterious(0.02) benign(0.12) TCGA-D3-A8GI-06 22 51017922 51017922 G A CHKB Missense_Mutation p.S349F 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 22 51133441 51133441 C T SHANK3 Silent p.G423G 0.58 TCGA-D3-A8GI-06 22 51160251 51160251 C T SHANK3 Silent p.P1346P 0.50 TCGA-D3-A8GI-06 2 100018745 100018745 A G REV1 Silent p.D1202D 0.37 TCGA-D3-A8GI-06 2 100210263 100210263 G A AFF3 Silent p.V645V 0.36 TCGA-D3-A8GI-06 2 100919473 100919473 T G LONRF2 Silent p.G277G 0.29 TCGA-D3-A8GI-06 2 101644857 101644857 G A TBC1D8 Missense_Mutation p.P739S 0.44 deleterious(0.02) benign(0.037) TCGA-D3-A8GI-06 2 10186303 10186303 C T KLF11 Silent p.S23S 0.35 TCGA-D3-A8GI-06 2 102477394 102477394 C T MAP4K4 Silent p.S604S 0.21 TCGA-D3-A8GI-06 2 102793102 102793102 G A IL1R1 Nonsense_Mutation p.W531* 0.49 TCGA-D3-A8GI-06 2 103125390 103125390 C T SLC9A4 Missense_Mutation p.R496C 0.47 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 2 103414405 103414405 C T TMEM182 Missense_Mutation p.P139S 0.26 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 2 105687792 105687792 C T MRPS9 Missense_Mutation p.P113S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 105896912 105896912 G A TGFBRAP1 Silent p.L464L 0.42 TCGA-D3-A8GI-06 2 106497819 106497819 G A NCK2 Missense_Mutation p.D88N 0.46 tolerated(0.24) benign(0.223) TCGA-D3-A8GI-06 2 107032305 107032305 C T RGPD3 Splice_Site p.X1688_splice 0.30 TCGA-D3-A8GI-06 2 107039592 107039592 C T RGPD3 Missense_Mutation p.E1611K 0.15 tolerated_low_confidence(0.87) benign(0.001) TCGA-D3-A8GI-06 2 107040178 107040178 C T RGPD3 Missense_Mutation p.M1415I 0.29 tolerated(0.11) benign(0.316) TCGA-D3-A8GI-06 2 107040821 107040821 C T RGPD3 Missense_Mutation p.G1201E 0.42 tolerated(0.28) benign(0.168) TCGA-D3-A8GI-06 2 107041470 107041470 G A RGPD3 Nonsense_Mutation p.Q985* 0.24 TCGA-D3-A8GI-06 2 107052662 107052662 C T RGPD3 Missense_Mutation p.E559K 0.44 tolerated(0.08) benign(0.027) TCGA-D3-A8GI-06 2 107460431 107460431 C T ST6GAL2 Translation_Start_Site p.M1? 0.62 probably_damaging(0.997) TCGA-D3-A8GI-06 2 108471066 108471066 G A RGPD4 Missense_Mutation p.E345K 0.32 deleterious(0) possibly_damaging(0.636) TCGA-D3-A8GI-06 2 108881337 108881337 G A SULT1C3 Silent p.E226E 0.38 TCGA-D3-A8GI-06 2 108921885 108921885 A C SULT1C2 Missense_Mutation p.E215D 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 2 108998316 108998316 G A SULT1C4 Missense_Mutation p.E90K 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 2 109116104 109116104 C T GCC2 Silent p.F1626F 0.22 TCGA-D3-A8GI-06 2 110332247 110332247 G A SEPT10 Missense_Mutation p.R171C 0.45 deleterious(0.02) benign(0.196) TCGA-D3-A8GI-06 2 111398742 111398742 A G BUB1 Silent p.L942L 0.50 TCGA-D3-A8GI-06 2 111551698 111551698 G A ACOXL Missense_Mutation p.G98R 0.40 tolerated(0.08) benign(0.367) TCGA-D3-A8GI-06 2 112705128 112705128 C T MERTK Silent p.S247S 0.37 TCGA-D3-A8GI-06 2 112725777 112725777 C T MERTK Missense_Mutation p.S303F 0.45 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 2 113588070 113588070 C T IL1B Silent p.L226L 0.46 TCGA-D3-A8GI-06 2 113590968 113590968 G A IL1B Missense_Mutation p.P95L 0.38 tolerated(0.1) benign(0.216) TCGA-D3-A8GI-06 2 113590993 113590993 C T IL1B Missense_Mutation p.E87K 0.54 deleterious(0.01) benign(0.099) TCGA-D3-A8GI-06 2 113674757 113674757 A T IL37 Missense_Mutation p.D66V 0.59 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A8GI-06 2 113676170 113676170 G A IL37 Silent p.K147K 0.52 TCGA-D3-A8GI-06 2 113765409 113765409 G A IL36A Missense_Mutation p.E89K 0.39 tolerated(0.22) benign(0.268) TCGA-D3-A8GI-06 2 113820294 113820294 C T IL36RN 3'UTR 0.50 TCGA-D3-A8GI-06 2 113943010 113943010 G A PSD4 Silent p.Q414Q 0.52 TCGA-D3-A8GI-06 2 114036013 114036013 C T PAX8 5'UTR 0.50 TCGA-D3-A8GI-06 2 116101476 116101476 C T DPP10 Missense_Mutation p.R91W 0.57 deleterious(0) possibly_damaging(0.655) TCGA-D3-A8GI-06 2 116572476 116572476 G A DPP10 Missense_Mutation p.G607E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 11725950 11725950 C T GREB1 Missense_Mutation p.P360S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 2 119699919 119699919 G A MARCO Missense_Mutation p.E15K 0.33 tolerated(0.91) benign(0.044) TCGA-D3-A8GI-06 2 120206286 120206286 C T SCTR Missense_Mutation p.G331E 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A8GI-06 2 120236484 120236484 C T SCTR Silent p.G68G 0.31 TCGA-D3-A8GI-06 2 120366124 120366124 G A PCDP1 Missense_Mutation p.E394K 0.31 deleterious(0.04) benign(0.06) TCGA-D3-A8GI-06 2 120388383 120388383 C T PCDP1 Missense_Mutation p.S627F 0.46 deleterious(0.04) benign(0.424) TCGA-D3-A8GI-06 2 120404573 120404573 C T PCDP1 Silent p.V755V 0.47 TCGA-D3-A8GI-06 2 120799616 120799616 T C EPB41L5 Missense_Mutation p.I72T 0.38 deleterious(0) probably_damaging(0.911) TCGA-D3-A8GI-06 2 121744121 121744121 G A GLI2 Missense_Mutation p.D742N 0.35 tolerated(0.16) possibly_damaging(0.51) TCGA-D3-A8GI-06 2 121747126 121747126 C T GLI2 Silent p.P1212P 0.61 TCGA-D3-A8GI-06 2 121748026 121748026 C T GLI2 Silent p.F1512F 0.45 TCGA-D3-A8GI-06 2 121748233 121748233 C T GLI2 Silent p.F1581F 0.21 TCGA-D3-A8GI-06 2 121995206 121995206 G A TFCP2L1 Silent p.S332S 0.54 TCGA-D3-A8GI-06 2 125521268 125521268 C T CNTNAP5 Missense_Mutation p.L751F 0.62 deleterious(0.02) benign(0.078) TCGA-D3-A8GI-06 2 125530536 125530536 C T CNTNAP5 Silent p.T897T 0.43 TCGA-D3-A8GI-06 2 125547630 125547630 C T CNTNAP5 Silent p.C967C 0.51 TCGA-D3-A8GI-06 2 128183721 128183721 G A PROC Missense_Mutation p.R199Q 0.29 tolerated(0.2) possibly_damaging(0.552) TCGA-D3-A8GI-06 2 128322898 128322898 G A MYO7B Missense_Mutation p.D75N 0.29 deleterious(0) possibly_damaging(0.639) TCGA-D3-A8GI-06 2 128408973 128408973 G A GPR17 Missense_Mutation p.G250S 0.36 tolerated(0.19) possibly_damaging(0.771) TCGA-D3-A8GI-06 2 128471227 128471227 G A WDR33 Missense_Mutation p.R1080C 0.54 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-D3-A8GI-06 2 128712757 128712757 G A SAP130 Missense_Mutation p.P768L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 2 128918811 128918811 C T UGGT1 Missense_Mutation p.H932Y 0.42 tolerated(1) benign(0.016) TCGA-D3-A8GI-06 2 131487357 131487357 G A GPR148 Silent p.P211P 0.52 TCGA-D3-A8GI-06 2 131487358 131487358 G A GPR148 Missense_Mutation p.G212R 0.52 tolerated(0.13) possibly_damaging(0.624) TCGA-D3-A8GI-06 2 132010554 132010554 G A POTEE Missense_Mutation p.E554K 0.21 deleterious_low_confidence(0) benign(0.292) TCGA-D3-A8GI-06 2 132021977 132021977 G A POTEE Missense_Mutation p.M983I 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-D3-A8GI-06 2 132236883 132236883 G A TUBA3D Missense_Mutation p.E77K 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-D3-A8GI-06 2 133540405 133540405 G A NCKAP5 Missense_Mutation p.P1327S 0.59 tolerated(0.16) benign(0.014) TCGA-D3-A8GI-06 2 133542526 133542526 G A NCKAP5 Missense_Mutation p.L620F 0.30 deleterious(0.03) possibly_damaging(0.793) TCGA-D3-A8GI-06 2 135712241 135712241 C T CCNT2 3'UTR 0.41 TCGA-D3-A8GI-06 2 135743492 135743492 C T MAP3K19 Missense_Mutation p.D984N 0.51 deleterious(0.03) probably_damaging(0.92) TCGA-D3-A8GI-06 2 135920135 135920135 A T RAB3GAP1 Missense_Mutation p.Y767F 0.46 tolerated(0.34) benign(0.09) TCGA-D3-A8GI-06 2 136402979 136402979 C T R3HDM1 Missense_Mutation p.P502L 0.39 deleterious(0.05) benign(0.222) TCGA-D3-A8GI-06 2 136545942 136545942 C T LCT Silent p.G1912G 0.47 TCGA-D3-A8GI-06 2 136567181 136567181 G A LCT Silent p.S912S 0.31 TCGA-D3-A8GI-06 2 136570329 136570329 G A LCT Silent p.V635V 0.33 TCGA-D3-A8GI-06 2 136603890 136603890 G A MCM6 Missense_Mutation p.P709L 0.26 deleterious(0.02) benign(0.022) TCGA-D3-A8GI-06 2 137814379 137814379 C T THSD7B Missense_Mutation p.P177S 0.43 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 2 137814483 137814483 C T THSD7B Silent p.L211L 0.34 TCGA-D3-A8GI-06 2 137814712 137814712 C T THSD7B Missense_Mutation p.H288Y 0.42 tolerated(0.16) possibly_damaging(0.677) TCGA-D3-A8GI-06 2 137917931 137917931 G A THSD7B Silent p.G506G 0.28 TCGA-D3-A8GI-06 2 137928321 137928321 G A THSD7B Silent p.T512T 0.47 TCGA-D3-A8GI-06 2 137928463 137928463 G A THSD7B Missense_Mutation p.G560S 0.44 deleterious(0.02) probably_damaging(0.931) TCGA-D3-A8GI-06 2 138163334 138163334 C T THSD7B Silent p.S884S 0.20 TCGA-D3-A8GI-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.35 tolerated(0.95) unknown(0) TCGA-D3-A8GI-06 2 138413176 138413176 G A THSD7B Missense_Mutation p.E1354K 0.39 deleterious(0.04) unknown(0) TCGA-D3-A8GI-06 2 138414407 138414407 G A THSD7B Missense_Mutation p.E1386K 0.27 deleterious(0.03) unknown(0) TCGA-D3-A8GI-06 2 139428475 139428475 C T NXPH2 3'UTR 0.35 TCGA-D3-A8GI-06 2 140990830 140990830 G A LRP1B Silent p.S4575S 0.34 TCGA-D3-A8GI-06 2 141027900 141027900 C T LRP1B Silent p.K4386K 0.47 TCGA-D3-A8GI-06 2 141116429 141116429 C T LRP1B Missense_Mutation p.D3740N 0.41 possibly_damaging(0.539) TCGA-D3-A8GI-06 2 141135780 141135780 C T LRP1B Missense_Mutation p.G3536E 0.40 probably_damaging(0.982) TCGA-D3-A8GI-06 2 141143471 141143471 C T LRP1B Missense_Mutation p.E3508K 0.28 possibly_damaging(0.621) TCGA-D3-A8GI-06 2 141200163 141200163 G A LRP1B Nonsense_Mutation p.Q3442* 0.48 TCGA-D3-A8GI-06 2 141245249 141245249 G A LRP1B Silent p.I3060I 0.30 TCGA-D3-A8GI-06 2 141250233 141250233 G A LRP1B Missense_Mutation p.H3022Y 0.40 benign(0.152) TCGA-D3-A8GI-06 2 141294266 141294266 G A LRP1B Missense_Mutation p.S2509F 0.47 possibly_damaging(0.788) TCGA-D3-A8GI-06 2 141533722 141533722 C T LRP1B Silent p.R1815R 0.38 TCGA-D3-A8GI-06 2 141739765 141739765 C T LRP1B Missense_Mutation p.D951N 0.50 probably_damaging(0.982) TCGA-D3-A8GI-06 2 141771150 141771150 C T LRP1B Silent p.Q785Q 0.50 TCGA-D3-A8GI-06 2 141806648 141806648 C T LRP1B Missense_Mutation p.E566K 0.48 benign(0.168) TCGA-D3-A8GI-06 2 141816473 141816473 G A LRP1B Nonsense_Mutation p.Q463* 0.59 TCGA-D3-A8GI-06 2 141819767 141819767 C T LRP1B Silent p.R363R 0.38 TCGA-D3-A8GI-06 2 141946082 141946082 G A LRP1B Silent p.I307I 0.39 TCGA-D3-A8GI-06 2 143718226 143718226 G A KYNU Missense_Mutation p.E206K 0.48 tolerated(0.5) benign(0.005) TCGA-D3-A8GI-06 2 144381741 144381741 T G ARHGAP15 Missense_Mutation p.I348S 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 2 145156442 145156442 G A ZEB2 Missense_Mutation p.P771L 0.49 deleterious(0.04) benign(0.011) TCGA-D3-A8GI-06 2 145156999 145156999 G A ZEB2 Silent p.F585F 0.30 TCGA-D3-A8GI-06 2 145158772 145158772 G A ZEB2 Missense_Mutation p.H304Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 2 1457514 1457514 C T TPO Silent p.L177L 0.44 TCGA-D3-A8GI-06 2 1488550 1488550 C T TPO Silent p.S507S 0.43 TCGA-D3-A8GI-06 2 150294163 150294163 C T LYPD6 5'UTR 0.53 TCGA-D3-A8GI-06 2 152359378 152359378 C T NEB Missense_Mutation p.G7953R 0.50 possibly_damaging(0.867) TCGA-D3-A8GI-06 2 152382750 152382750 C T NEB Silent p.K7324K 0.73 TCGA-D3-A8GI-06 2 152397219 152397219 C T NEB Missense_Mutation p.V6927I 0.27 benign(0.23) TCGA-D3-A8GI-06 2 152402483 152402483 C T NEB Silent p.R6832R 0.47 TCGA-D3-A8GI-06 2 152420177 152420177 C T NEB Silent p.V6212V 0.46 TCGA-D3-A8GI-06 2 152506878 152506878 C T NEB Missense_Mutation p.D2415N 0.40 probably_damaging(1) TCGA-D3-A8GI-06 2 152507169 152507169 C T NEB Silent p.K2382K 0.51 TCGA-D3-A8GI-06 2 152512912 152512912 C T NEB Missense_Mutation p.D2084N 0.58 probably_damaging(1) TCGA-D3-A8GI-06 2 152537250 152537250 C T NEB Silent p.R1012R 0.48 TCGA-D3-A8GI-06 2 152566276 152566276 C T NEB Missense_Mutation p.R310K 0.42 benign(0.015) TCGA-D3-A8GI-06 2 152589667 152589667 C A NEB Missense_Mutation p.A2S 0.47 unknown(0) TCGA-D3-A8GI-06 2 155098601 155098601 C T GALNT13 Missense_Mutation p.H124Y 0.35 deleterious(0) possibly_damaging(0.873) TCGA-D3-A8GI-06 2 155099242 155099242 G A GALNT13 Silent p.V170V 0.35 TCGA-D3-A8GI-06 2 155115593 155115593 G A GALNT13 Missense_Mutation p.G306E 0.56 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 2 15607791 15607791 G A NBAS Missense_Mutation p.S672F 0.14 deleterious(0) benign(0.429) TCGA-D3-A8GI-06 2 15739817 15739817 C T DDX1 Missense_Mutation p.P95L 0.35 tolerated(0.67) benign(0.02) TCGA-D3-A8GI-06 2 158157267 158157267 C T GALNT5 Missense_Mutation p.S732F 0.51 deleterious(0) possibly_damaging(0.897) TCGA-D3-A8GI-06 2 158272120 158272120 C T CYTIP 3'UTR 0.54 TCGA-D3-A8GI-06 2 158272267 158272267 C T CYTIP Silent p.K334K 0.36 TCGA-D3-A8GI-06 2 158626972 158626972 G A ACVR1 Missense_Mutation p.A233V 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 159028648 159028648 C T CCDC148 Missense_Mutation p.E585K 0.39 tolerated(0.19) possibly_damaging(0.801) TCGA-D3-A8GI-06 2 159195574 159195574 C T CCDC148 Silent p.L170L 0.28 TCGA-D3-A8GI-06 2 160688270 160688270 C T LY75-CD302 Missense_Mutation p.R1290Q 0.41 deleterious(0.04) probably_damaging(0.947) TCGA-D3-A8GI-06 2 160803405 160803405 C T PLA2R1 Missense_Mutation p.D1292N 0.58 tolerated(0.22) benign(0.246) TCGA-D3-A8GI-06 2 160833917 160833917 G A PLA2R1 Missense_Mutation p.S760L 0.54 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GI-06 2 162865110 162865110 C T DPP4 Missense_Mutation p.G650E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 163031454 163031454 G A FAP Missense_Mutation p.S631L 0.55 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 2 163099971 163099971 C T FAP 5'UTR 0.55 TCGA-D3-A8GI-06 2 163123642 163123642 G A IFIH1 3'UTR 0.38 TCGA-D3-A8GI-06 2 163138885 163138885 G A IFIH1 Nonsense_Mutation p.Q433* 0.47 TCGA-D3-A8GI-06 2 163374525 163374525 G A KCNH7 Missense_Mutation p.P203S 0.29 tolerated(0.14) benign(0.17) TCGA-D3-A8GI-06 2 163374668 163374668 C T KCNH7 Missense_Mutation p.R155Q 0.61 tolerated(0.31) benign(0.024) TCGA-D3-A8GI-06 2 165548833 165548833 C T COBLL1 Missense_Mutation p.M1104I 0.33 deleterious(0.01) benign(0.005) TCGA-D3-A8GI-06 2 165768166 165768166 C T SLC38A11 Missense_Mutation p.E259K 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 166020973 166020973 C T SCN3A Silent p.G177G 0.41 TCGA-D3-A8GI-06 2 166179700 166179700 C T SCN2A Missense_Mutation p.P569L 0.37 deleterious(0.03) probably_damaging(0.976) TCGA-D3-A8GI-06 2 166848853 166848853 G A SCN1A Silent p.G1644G 0.26 TCGA-D3-A8GI-06 2 166854664 166854664 C T SCN1A Missense_Mutation p.E1454K 0.43 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GI-06 2 167262827 167262827 C T SCN7A Missense_Mutation p.G1438R 0.45 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A8GI-06 2 167284379 167284379 C T SCN7A Silent p.R924R 0.36 TCGA-D3-A8GI-06 2 167298186 167298186 G A SCN7A Missense_Mutation p.A626V 0.44 deleterious(0) possibly_damaging(0.661) TCGA-D3-A8GI-06 2 16743294 16743294 G A FAM49A Silent p.T138T 0.29 TCGA-D3-A8GI-06 2 167760135 167760135 G A XIRP2 Missense_Mutation p.G48E 0.59 benign(0.002) TCGA-D3-A8GI-06 2 168100094 168100094 G A XIRP2 Missense_Mutation p.R731K 0.44 probably_damaging(0.986) TCGA-D3-A8GI-06 2 168102385 168102385 G A XIRP2 Missense_Mutation p.E1495K 0.56 probably_damaging(0.999) TCGA-D3-A8GI-06 2 168104423 168104423 G A XIRP2 Missense_Mutation p.G2174E 0.52 benign(0.004) TCGA-D3-A8GI-06 2 168104577 168104577 G A XIRP2 Missense_Mutation p.M2225I 0.32 benign(0.002) TCGA-D3-A8GI-06 2 168107030 168107030 G A XIRP2 Missense_Mutation p.G3043E 0.52 benign(0.009) TCGA-D3-A8GI-06 2 168115129 168115129 T C XIRP2 3'UTR 0.49 TCGA-D3-A8GI-06 2 168726071 168726071 G A B3GALT1 Missense_Mutation p.M174I 0.48 deleterious(0.01) possibly_damaging(0.619) TCGA-D3-A8GI-06 2 168726259 168726259 C T B3GALT1 Missense_Mutation p.S237L 0.47 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GI-06 2 169833155 169833155 C T ABCB11 Missense_Mutation p.D414N 0.19 tolerated(0.11) benign(0.03) TCGA-D3-A8GI-06 2 169989091 169989091 C T LRP2 Missense_Mutation p.G4574E 0.49 benign(0.005) TCGA-D3-A8GI-06 2 170027117 170027117 C T LRP2 Missense_Mutation p.R3775Q 0.52 benign(0.06) TCGA-D3-A8GI-06 2 170068537 170068537 C T LRP2 Missense_Mutation p.R2074K 0.36 benign(0.016) TCGA-D3-A8GI-06 2 170134407 170134407 C T LRP2 Silent p.R540R 0.29 TCGA-D3-A8GI-06 2 172188314 172188314 C A METTL8 Missense_Mutation p.K240N 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 172952973 172952973 C T DLX1 Silent p.P252P 0.24 TCGA-D3-A8GI-06 2 173782567 173782567 C T RAPGEF4 Missense_Mutation p.P161L 0.36 tolerated(0.21) possibly_damaging(0.494) TCGA-D3-A8GI-06 2 173900908 173900908 C T RAPGEF4 Missense_Mutation p.P919L 0.49 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 2 174228586 174228586 C T CDCA7 Missense_Mutation p.S221L 0.56 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 2 175436736 175436736 G A WIPF1 Missense_Mutation p.P266L 0.67 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 2 175618292 175618292 G A CHRNA1 Silent p.I264I 0.60 TCGA-D3-A8GI-06 2 17699594 17699594 G T RAD51AP2 Missense_Mutation p.P30Q 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GI-06 2 177034265 177034265 G A HOXD3 Silent p.K141K 0.51 TCGA-D3-A8GI-06 2 177054888 177054888 G A HOXD1 3'UTR 0.51 TCGA-D3-A8GI-06 2 17773439 17773439 G A VSNL1 Missense_Mutation p.G33E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 179259100 179259100 C T OSBPL6 Silent p.L903L 0.33 TCGA-D3-A8GI-06 2 179411152 179411152 C T TTN Missense_Mutation p.D31636N 0.56 TCGA-D3-A8GI-06 2 179419407 179419407 C T TTN Missense_Mutation p.R29556Q 0.49 TCGA-D3-A8GI-06 2 179427702 179427702 C T TTN Silent p.R27719R 0.32 TCGA-D3-A8GI-06 2 179444921 179444921 C T TTN Missense_Mutation p.E22365K 0.49 TCGA-D3-A8GI-06 2 179452278 179452278 C A TTN Missense_Mutation p.G21253V 0.42 TCGA-D3-A8GI-06 2 179457181 179457181 C T TTN Missense_Mutation p.D19851N 0.33 TCGA-D3-A8GI-06 2 179475751 179475751 T A TTN Silent p.S17035S 0.43 TCGA-D3-A8GI-06 2 179528597 179528597 C T TTN Missense_Mutation p.E12133K 0.34 TCGA-D3-A8GI-06 2 179570007 179570007 T G TTN Missense_Mutation p.K9833T 0.43 TCGA-D3-A8GI-06 2 179574573 179574573 G A TTN Silent p.I9491I 0.32 TCGA-D3-A8GI-06 2 179577239 179577239 C T TTN Missense_Mutation p.G9137E 0.33 TCGA-D3-A8GI-06 2 179582086 179582086 C T TTN Missense_Mutation p.D8459N 0.31 TCGA-D3-A8GI-06 2 179584008 179584008 C T TTN Missense_Mutation p.E8037K 0.31 TCGA-D3-A8GI-06 2 179587527 179587527 G A TTN Missense_Mutation p.P7367S 0.30 TCGA-D3-A8GI-06 2 179588394 179588394 G A TTN Missense_Mutation p.P7145S 0.50 TCGA-D3-A8GI-06 2 179590163 179590163 C T TTN Missense_Mutation p.G6923E 0.44 TCGA-D3-A8GI-06 2 179591858 179591858 G A TTN Missense_Mutation p.P6745L 0.35 TCGA-D3-A8GI-06 2 179591979 179591979 C T TTN Missense_Mutation p.E6705K 0.50 TCGA-D3-A8GI-06 2 179593831 179593831 G A TTN Nonsense_Mutation p.Q6312* 0.53 TCGA-D3-A8GI-06 2 179594290 179594290 G A TTN Missense_Mutation p.P6198L 0.53 TCGA-D3-A8GI-06 2 179596645 179596645 C T TTN Missense_Mutation p.D5653N 0.54 TCGA-D3-A8GI-06 2 179598557 179598557 G A TTN Silent p.L5187L 0.60 TCGA-D3-A8GI-06 2 179602851 179602851 C T TTN Missense_Mutation p.E4777K 0.37 TCGA-D3-A8GI-06 2 179602934 179602934 C T TTN Missense_Mutation p.R4749Q 0.50 TCGA-D3-A8GI-06 2 179604734 179604734 C T TTN Missense_Mutation p.S4409N 0.47 TCGA-D3-A8GI-06 2 179605638 179605638 G A TTN Missense_Mutation p.P4108S 0.42 TCGA-D3-A8GI-06 2 179610653 179610653 C T TTN Intron 0.43 TCGA-D3-A8GI-06 2 179610728 179610728 A G TTN Intron 0.49 TCGA-D3-A8GI-06 2 179610953 179610953 G A TTN Intron 0.53 TCGA-D3-A8GI-06 2 179611037 179611037 C T TTN Intron 0.29 TCGA-D3-A8GI-06 2 179611474 179611474 C T TTN Intron 0.54 TCGA-D3-A8GI-06 2 179611541 179611541 C T TTN Intron 0.31 TCGA-D3-A8GI-06 2 179615320 179615320 C T TTN Intron 0.59 TCGA-D3-A8GI-06 2 179629377 179629377 G A TTN Missense_Mutation p.H3289Y 0.33 TCGA-D3-A8GI-06 2 179634644 179634644 C T TTN Missense_Mutation p.M2888I 0.44 TCGA-D3-A8GI-06 2 179637980 179637980 C T TTN Missense_Mutation p.E2571K 0.28 TCGA-D3-A8GI-06 2 179640469 179640469 C T TTN Nonsense_Mutation p.W2041* 0.45 TCGA-D3-A8GI-06 2 179642405 179642405 C T TTN Intron 0.51 TCGA-D3-A8GI-06 2 179642592 179642592 C T TTN Missense_Mutation p.G1440E 0.32 TCGA-D3-A8GI-06 2 179642626 179642626 G A TTN Missense_Mutation p.P1429S 0.60 TCGA-D3-A8GI-06 2 179701562 179701562 G A CCDC141 Intron 0.43 TCGA-D3-A8GI-06 2 179733971 179733971 G A CCDC141 Missense_Mutation p.A756V 0.23 tolerated(1) benign(0.024) TCGA-D3-A8GI-06 2 17997996 17997996 C G MSGN1 Missense_Mutation p.H71D 0.44 tolerated(0.12) benign(0.034) TCGA-D3-A8GI-06 2 182350721 182350721 T G ITGA4 Splice_Site p.X385_splice 0.40 TCGA-D3-A8GI-06 2 182400366 182400366 G A ITGA4 3'UTR 0.41 TCGA-D3-A8GI-06 2 182438576 182438576 G A CERKL Missense_Mutation p.L173F 0.35 deleterious(0) possibly_damaging(0.906) TCGA-D3-A8GI-06 2 182468748 182468748 G A CERKL Silent p.F99F 0.41 TCGA-D3-A8GI-06 2 182543418 182543418 C T NEUROD1 Missense_Mutation p.G57E 0.24 tolerated(1) benign(0) TCGA-D3-A8GI-06 2 182780280 182780280 G A SSFA2 Missense_Mutation p.R638K 0.57 tolerated(0.3) benign(0.015) TCGA-D3-A8GI-06 2 183291474 183291474 C T PDE1A Intron 0.58 TCGA-D3-A8GI-06 2 185800730 185800730 C T ZNF804A Nonsense_Mutation p.Q203* 0.34 TCGA-D3-A8GI-06 2 185802503 185802503 G A ZNF804A Missense_Mutation p.E794K 0.40 tolerated(0.05) probably_damaging(0.956) TCGA-D3-A8GI-06 2 185803675 185803675 C T ZNF804A Silent p.F1184F 0.33 TCGA-D3-A8GI-06 2 186672600 186672600 G A FSIP2 Silent p.K6278K 0.37 TCGA-D3-A8GI-06 2 186673284 186673284 G A FSIP2 Silent p.R6506R 0.37 TCGA-D3-A8GI-06 2 186697942 186697942 G A FSIP2 Missense_Mutation p.D6994N 0.45 benign(0.084) TCGA-D3-A8GI-06 2 18758118 18758118 G T NT5C1B Silent p.P415P 0.33 TCGA-D3-A8GI-06 2 187626300 187626300 C T FAM171B Missense_Mutation p.H411Y 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 2 18767535 18767535 C T NT5C1B Silent p.R141R 0.39 TCGA-D3-A8GI-06 2 187692805 187692805 C T ZSWIM2 Missense_Mutation p.R603Q 0.35 tolerated(1) benign(0) TCGA-D3-A8GI-06 2 187692815 187692815 C T ZSWIM2 Missense_Mutation p.E600K 0.48 tolerated(1) benign(0) TCGA-D3-A8GI-06 2 188225376 188225376 C T CALCRL Missense_Mutation p.A244T 0.50 tolerated(0.06) probably_damaging(0.987) TCGA-D3-A8GI-06 2 188225377 188225377 C T CALCRL Silent p.V243V 0.51 TCGA-D3-A8GI-06 2 189861214 189861214 G A COL3A1 Missense_Mutation p.G585R 0.51 unknown(0) TCGA-D3-A8GI-06 2 189864262 189864262 G A COL3A1 Missense_Mutation p.E730K 0.55 unknown(0) TCGA-D3-A8GI-06 2 189871128 189871128 C T COL3A1 Missense_Mutation p.P1051S 0.45 probably_damaging(0.993) TCGA-D3-A8GI-06 2 189873755 189873755 G A COL3A1 Missense_Mutation p.E1211K 0.42 unknown(0) TCGA-D3-A8GI-06 2 189951493 189951493 G A COL5A2 Missense_Mutation p.P217S 0.21 probably_damaging(0.996) TCGA-D3-A8GI-06 2 190924812 190924812 G A MSTN Silent p.F241F 0.50 TCGA-D3-A8GI-06 2 192700879 192700879 C T SDPR Missense_Mutation p.E350K 0.39 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 2 19553261 19553261 G A OSR1 Silent p.I102I 0.43 TCGA-D3-A8GI-06 2 196636474 196636474 C T DNAH7 Missense_Mutation p.M3781I 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 196651736 196651736 C T DNAH7 Missense_Mutation p.E3626K 0.53 tolerated(0.22) possibly_damaging(0.457) TCGA-D3-A8GI-06 2 196651834 196651834 C T DNAH7 Missense_Mutation p.R3593Q 0.32 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 2 196673424 196673424 C T DNAH7 Silent p.K3355K 0.28 TCGA-D3-A8GI-06 2 196723312 196723312 C T DNAH7 Silent p.A2651A 0.49 TCGA-D3-A8GI-06 2 196726590 196726590 G A DNAH7 Silent p.G2529G 0.52 TCGA-D3-A8GI-06 2 196801429 196801429 C T DNAH7 Missense_Mutation p.G1056R 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 196825310 196825310 C T DNAH7 Silent p.E855E 0.49 TCGA-D3-A8GI-06 2 196825473 196825473 C T DNAH7 Missense_Mutation p.G801E 0.48 tolerated(0.22) probably_damaging(0.98) TCGA-D3-A8GI-06 2 196866575 196866575 G A DNAH7 Missense_Mutation p.P333S 0.42 tolerated(0.06) benign(0.024) TCGA-D3-A8GI-06 2 197135923 197135923 G A HECW2 Missense_Mutation p.S1110L 0.34 deleterious(0.03) benign(0.164) TCGA-D3-A8GI-06 2 197183970 197183970 C T HECW2 Silent p.E548E 0.52 TCGA-D3-A8GI-06 2 197184135 197184135 C T HECW2 Silent p.R493R 0.50 TCGA-D3-A8GI-06 2 197297898 197297898 C T HECW2 Missense_Mutation p.E84K 0.38 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GI-06 2 198650719 198650719 G A BOLL Silent p.T3T 0.37 TCGA-D3-A8GI-06 2 198650728 198650728 C T BOLL 5'UTR 0.57 TCGA-D3-A8GI-06 2 198950262 198950262 C T PLCL1 Missense_Mutation p.P674L 0.58 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 2 198950752 198950752 G C PLCL1 Missense_Mutation p.E837D 0.34 tolerated(0.3) benign(0.005) TCGA-D3-A8GI-06 2 198950790 198950790 G A PLCL1 Missense_Mutation p.R850Q 0.46 deleterious(0.03) possibly_damaging(0.82) TCGA-D3-A8GI-06 2 200298072 200298072 G A SATB2 Missense_Mutation p.A112V 0.39 tolerated(0.11) benign(0.272) TCGA-D3-A8GI-06 2 201342392 201342392 C T SPATS2L Missense_Mutation p.P439S 0.50 tolerated(0.11) benign(0.014) TCGA-D3-A8GI-06 2 201437666 201437666 A T SGOL2 Missense_Mutation p.D866V 0.50 tolerated(0.33) benign(0.167) TCGA-D3-A8GI-06 2 20145603 20145603 A T WDR35 Missense_Mutation p.L608M 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 2 201477417 201477417 G A AOX1 Missense_Mutation p.G450E 0.34 tolerated(1) benign(0.009) TCGA-D3-A8GI-06 2 201478623 201478623 G A AOX1 Silent p.K515K 0.34 TCGA-D3-A8GI-06 2 201505907 201505907 C T AOX1 Silent p.F885F 0.53 TCGA-D3-A8GI-06 2 201718113 201718113 C T CLK1 Missense_Mutation p.M499I 0.51 deleterious(0.02) probably_damaging(0.967) TCGA-D3-A8GI-06 2 201775996 201775996 A G ORC2 3'UTR 0.41 TCGA-D3-A8GI-06 2 20205634 20205634 C T MATN3 Missense_Mutation p.G221S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 202619391 202619391 G A ALS2 Missense_Mutation p.S492F 0.53 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 2 202625700 202625700 G A ALS2 Silent p.Y339Y 0.43 TCGA-D3-A8GI-06 2 203329650 203329650 C T BMPR2 Silent p.T65T 0.40 TCGA-D3-A8GI-06 2 204154538 204154538 C T CYP20A1 Missense_Mutation p.P341L 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 204571291 204571291 G A CD28 5'UTR 0.73 TCGA-D3-A8GI-06 2 204732719 204732719 G A CTLA4 Silent p.R18R 0.32 TCGA-D3-A8GI-06 2 204735548 204735548 C T CTLA4 Nonsense_Mutation p.Q117* 0.26 TCGA-D3-A8GI-06 2 205550953 205550953 G A PARD3B Missense_Mutation p.G57E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 206607986 206607986 T G NRP2 Missense_Mutation p.S451A 0.48 deleterious(0) benign(0.145) TCGA-D3-A8GI-06 2 206874312 206874312 G A INO80D Silent p.A583A 0.23 TCGA-D3-A8GI-06 2 206921354 206921354 G A INO80D Missense_Mutation p.R178W 0.33 deleterious(0.03) benign(0.04) TCGA-D3-A8GI-06 2 207174762 207174762 G A ZDBF2 Missense_Mutation p.R1837K 0.47 tolerated(0.44) benign(0.067) TCGA-D3-A8GI-06 2 207509179 207509179 G A AC010731.4 RNA 0.26 TCGA-D3-A8GI-06 2 207804364 207804364 T G CPO Missense_Mutation p.L14R 0.22 deleterious(0.03) possibly_damaging(0.548) TCGA-D3-A8GI-06 2 20838277 20838277 G A HS1BP3 Missense_Mutation p.P181L 0.28 tolerated(0.58) benign(0.005) TCGA-D3-A8GI-06 2 208725860 208725860 G A PLEKHM3 Missense_Mutation p.L693F 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GI-06 2 209049728 209049728 C T C2orf80 Missense_Mutation p.E24K 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 2 211070361 211070361 C T ACADL Missense_Mutation p.A255T 0.38 deleterious(0.01) benign(0.078) TCGA-D3-A8GI-06 2 211082723 211082723 C T ACADL Missense_Mutation p.D113N 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A8GI-06 2 211163270 211163270 G A MYL1 Missense_Mutation p.L60F 0.44 tolerated(0.07) probably_damaging(0.922) TCGA-D3-A8GI-06 2 211168272 211168272 G A MYL1 Intron 0.24 TCGA-D3-A8GI-06 2 211179710 211179710 G A MYL1 Silent p.A19A 0.50 TCGA-D3-A8GI-06 2 21224871 21224871 C T APOB Missense_Mutation p.E4475K 0.59 benign(0.002) TCGA-D3-A8GI-06 2 21224988 21224988 G A APOB Missense_Mutation p.L4436F 0.27 benign(0.005) TCGA-D3-A8GI-06 2 21229930 21229930 G A APOB Silent p.F3270F 0.51 TCGA-D3-A8GI-06 2 21232428 21232428 C T APOB Missense_Mutation p.E2438K 0.45 benign(0.048) TCGA-D3-A8GI-06 2 21247918 21247918 C T APOB Missense_Mutation p.A775T 0.45 probably_damaging(0.999) TCGA-D3-A8GI-06 2 21251244 21251244 G A APOB Missense_Mutation p.S595F 0.44 probably_damaging(0.999) TCGA-D3-A8GI-06 2 212576801 212576801 C T ERBB4 Silent p.L366L 0.33 TCGA-D3-A8GI-06 2 21258578 21258578 G A APOB Silent p.T232T 0.54 TCGA-D3-A8GI-06 2 213921786 213921786 C T IKZF2 Silent p.E59E 0.35 TCGA-D3-A8GI-06 2 214215341 214215341 C T SPAG16 Missense_Mutation p.S245F 0.57 deleterious(0.01) possibly_damaging(0.707) TCGA-D3-A8GI-06 2 214794842 214794842 A G SPAG16 Missense_Mutation p.K458R 0.35 tolerated(0.44) benign(0.012) TCGA-D3-A8GI-06 2 215823137 215823137 A C ABCA12 Missense_Mutation p.L1994W 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 215848381 215848381 C T ABCA12 Missense_Mutation p.E1458K 0.34 tolerated(0.07) probably_damaging(0.997) TCGA-D3-A8GI-06 2 215882781 215882781 C T ABCA12 Missense_Mutation p.R578K 0.41 tolerated(0.49) benign(0.007) TCGA-D3-A8GI-06 2 217311798 217311798 C T SMARCAL1 Missense_Mutation p.L590F 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 218940047 218940047 G A RUFY4 Missense_Mutation p.E298K 0.39 tolerated(0.42) benign(0.004) TCGA-D3-A8GI-06 2 218947911 218947911 C T RUFY4 Silent p.Y498Y 0.59 TCGA-D3-A8GI-06 2 219028847 219028847 C T CXCR1 3'UTR 0.23 TCGA-D3-A8GI-06 2 219206854 219206854 C T PNKD Silent p.F256F 0.52 TCGA-D3-A8GI-06 2 219259445 219259445 C T SLC11A1 Silent p.H493H 0.27 TCGA-D3-A8GI-06 2 219509453 219509453 G A ZNF142 Missense_Mutation p.H596Y 0.44 deleterious(0) benign(0.152) TCGA-D3-A8GI-06 2 219563877 219563877 C T STK36 Missense_Mutation p.P1204S 0.44 tolerated(0.09) possibly_damaging(0.786) TCGA-D3-A8GI-06 2 219870946 219870946 C T CCDC108 Splice_Site p.X1574_splice 0.43 TCGA-D3-A8GI-06 2 220022304 220022304 T A NHEJ1 Missense_Mutation p.T94S 0.47 tolerated(0.17) benign(0.003) TCGA-D3-A8GI-06 2 220045856 220045856 C T FAM134A Missense_Mutation p.P238L 0.31 deleterious(0) probably_damaging(0.919) TCGA-D3-A8GI-06 2 220147571 220147571 C T DNAJB2 Missense_Mutation p.P122L 0.34 tolerated(0.54) benign(0.136) TCGA-D3-A8GI-06 2 220167330 220167330 G A PTPRN Missense_Mutation p.P203S 0.43 tolerated(0.25) benign(0.005) TCGA-D3-A8GI-06 2 220337756 220337756 C T SPEG Missense_Mutation p.T1362I 0.23 benign(0.002) TCGA-D3-A8GI-06 2 220337757 220337757 C T SPEG Silent p.T1362T 0.23 TCGA-D3-A8GI-06 2 220347963 220347963 G A SPEG Silent p.E1926E 0.40 TCGA-D3-A8GI-06 2 220353521 220353521 C T SPEG Missense_Mutation p.P2683L 0.52 possibly_damaging(0.511) TCGA-D3-A8GI-06 2 220356900 220356900 C T SPEG Missense_Mutation p.R3177C 0.55 benign(0.056) TCGA-D3-A8GI-06 2 220397633 220397633 C T ASIC4 Intron 0.48 TCGA-D3-A8GI-06 2 225265821 225265821 G A FAM124B Missense_Mutation p.P222L 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 227872280 227872280 C T COL4A4 Missense_Mutation p.G1612R 0.49 unknown(0) TCGA-D3-A8GI-06 2 227896687 227896687 C T COL4A4 Missense_Mutation p.G1264E 0.50 unknown(0) TCGA-D3-A8GI-06 2 227896959 227896959 C T COL4A4 Missense_Mutation p.G1204E 0.58 unknown(0) TCGA-D3-A8GI-06 2 227942639 227942639 C T COL4A4 Missense_Mutation p.R653K 0.46 possibly_damaging(0.694) TCGA-D3-A8GI-06 2 228124576 228124576 G A COL4A3 Missense_Mutation p.G366E 0.46 probably_damaging(1) TCGA-D3-A8GI-06 2 228770952 228770952 G A DAW1 Silent p.R252R 0.28 TCGA-D3-A8GI-06 2 228783545 228783545 G A DAW1 Silent p.L341L 0.52 TCGA-D3-A8GI-06 2 228855829 228855829 C T SPHKAP Missense_Mutation p.E1616K 0.30 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 2 228882320 228882320 C T SPHKAP Missense_Mutation p.E1084K 0.55 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 2 228883578 228883578 C T SPHKAP Silent p.R664R 0.29 TCGA-D3-A8GI-06 2 229890713 229890713 A G PID1 Missense_Mutation p.F128L 0.32 tolerated(0.23) benign(0.009) TCGA-D3-A8GI-06 2 230223297 230223297 C T DNER Missense_Mutation p.D725N 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 230875553 230875553 C T FBXO36 Missense_Mutation p.R174C 0.41 deleterious(0.03) benign(0.009) TCGA-D3-A8GI-06 2 231109737 231109737 C T SP140 Silent p.L202L 0.34 TCGA-D3-A8GI-06 2 231150513 231150513 G A SP140 Silent p.A537A 0.53 TCGA-D3-A8GI-06 2 231367811 231367811 G A SP100 Missense_Mutation p.R584K 0.41 tolerated(0.11) benign(0.024) TCGA-D3-A8GI-06 2 231988152 231988152 T C HTR2B Silent p.P109P 0.37 TCGA-D3-A8GI-06 2 232081453 232081453 C T ARMC9 Missense_Mutation p.L151F 0.35 tolerated(0.07) possibly_damaging(0.902) TCGA-D3-A8GI-06 2 232263466 232263466 G A B3GNT7 Missense_Mutation p.G346S 0.40 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GI-06 2 232263489 232263489 C T B3GNT7 Silent p.S353S 0.39 TCGA-D3-A8GI-06 2 232597731 232597731 G A PDE6D Silent p.I128I 0.39 TCGA-D3-A8GI-06 2 233393014 233393014 G A CHRND Missense_Mutation p.G96R 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-D3-A8GI-06 2 233396364 233396364 A C CHRND Missense_Mutation p.K349Q 0.53 tolerated(0.37) benign(0.032) TCGA-D3-A8GI-06 2 233986949 233986949 G A INPP5D Missense_Mutation p.D111N 0.43 deleterious(0.02) benign(0.417) TCGA-D3-A8GI-06 2 234106864 234106864 C T INPP5D Silent p.P927P 0.46 TCGA-D3-A8GI-06 2 234198983 234198983 C T ATG16L1 Missense_Mutation p.R472C 0.48 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 2 234247328 234247328 G A SAG Silent p.K317K 0.45 TCGA-D3-A8GI-06 2 234526337 234526337 C T UGT1A8 5'UTR 0.34 TCGA-D3-A8GI-06 2 234526460 234526460 G A UGT1A8 Missense_Mutation p.S36N 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 2 234580844 234580844 G A UGT1A9 Silent p.R88R 0.42 TCGA-D3-A8GI-06 2 234601615 234601615 C T UGT1A6 5'UTR 0.55 TCGA-D3-A8GI-06 2 234601813 234601813 G A UGT1A6 Missense_Mutation p.E55K 0.29 tolerated(0.1) benign(0.16) TCGA-D3-A8GI-06 2 234601955 234601955 G A UGT1A6 Missense_Mutation p.R102Q 0.51 tolerated(0.85) possibly_damaging(0.603) TCGA-D3-A8GI-06 2 234869511 234869511 G A TRPM8 Missense_Mutation p.R485Q 0.51 tolerated(0.17) benign(0.002) TCGA-D3-A8GI-06 2 237374305 237374305 C T IQCA1 Missense_Mutation p.E257K 0.49 tolerated(0.58) benign(0.001) TCGA-D3-A8GI-06 2 237405910 237405910 C T IQCA1 Missense_Mutation p.G78R 0.36 deleterious(0) possibly_damaging(0.888) TCGA-D3-A8GI-06 2 238253132 238253132 T A COL6A3 Missense_Mutation p.K2510I 0.35 unknown(0) TCGA-D3-A8GI-06 2 238285429 238285429 C T COL6A3 Missense_Mutation p.G1019E 0.29 benign(0.188) TCGA-D3-A8GI-06 2 238287311 238287311 C T COL6A3 Missense_Mutation p.G822E 0.30 probably_damaging(1) TCGA-D3-A8GI-06 2 238287336 238287336 G A COL6A3 Nonsense_Mutation p.Q814* 0.62 TCGA-D3-A8GI-06 2 238296322 238296322 G A COL6A3 Silent p.F405F 0.57 TCGA-D3-A8GI-06 2 238296500 238296500 A G COL6A3 Missense_Mutation p.V346A 0.29 probably_damaging(0.976) TCGA-D3-A8GI-06 2 238475713 238475713 C T PRLH Silent p.F53F 0.26 TCGA-D3-A8GI-06 2 238672107 238672107 C T LRRFIP1 Missense_Mutation p.P584L 0.23 deleterious(0) benign(0.033) TCGA-D3-A8GI-06 2 239040055 239040055 C T ESPNL Silent p.F900F 0.67 TCGA-D3-A8GI-06 2 239051506 239051506 G A KLHL30 Missense_Mutation p.E281K 0.46 tolerated(0.53) benign(0.184) TCGA-D3-A8GI-06 2 239140714 239140714 G A AC016757.3 5'Flank 0.47 TCGA-D3-A8GI-06 2 240929595 240929595 G A NDUFA10 Nonsense_Mutation p.Q299* 0.51 TCGA-D3-A8GI-06 2 240984604 240984604 C T OR6B3 Missense_Mutation p.E296K 0.60 deleterious(0.01) benign(0.178) TCGA-D3-A8GI-06 2 241621957 241621957 C T AQP12B Missense_Mutation p.E100K 0.38 tolerated(0.12) possibly_damaging(0.544) TCGA-D3-A8GI-06 2 241622060 241622060 C T AQP12B Silent p.G65G 0.48 TCGA-D3-A8GI-06 2 242036623 242036623 G A MTERFD2 Intron 0.60 TCGA-D3-A8GI-06 2 242130667 242130667 G A ANO7 Splice_Site p.X110_splice 0.66 TCGA-D3-A8GI-06 2 24253853 24253853 G A C2orf44 Missense_Mutation p.P706S 0.46 tolerated(0.06) benign(0.006) TCGA-D3-A8GI-06 2 24253854 24253854 G A C2orf44 Silent p.A705A 0.46 TCGA-D3-A8GI-06 2 242572954 242572954 G A THAP4 Silent p.I206I 0.59 TCGA-D3-A8GI-06 2 24261080 24261080 T C C2orf44 Missense_Mutation p.R429G 0.54 deleterious(0) possibly_damaging(0.904) TCGA-D3-A8GI-06 2 242741439 242741439 C T GAL3ST2 Silent p.F121F 0.31 TCGA-D3-A8GI-06 2 24276784 24276784 C T FKBP1B Missense_Mutation p.P17L 0.49 deleterious(0.03) probably_damaging(0.964) TCGA-D3-A8GI-06 2 25966422 25966422 G A ASXL2 Silent p.T928T 0.34 TCGA-D3-A8GI-06 2 25966963 25966963 G A ASXL2 Missense_Mutation p.P748L 0.39 deleterious_low_confidence(0) benign(0.434) TCGA-D3-A8GI-06 2 26534650 26534650 C T GPR113 Missense_Mutation p.G649E 0.52 tolerated(0.14) possibly_damaging(0.544) TCGA-D3-A8GI-06 2 26683061 26683061 C T OTOF Silent p.T1942T 0.46 TCGA-D3-A8GI-06 2 26699791 26699791 C T OTOF Missense_Mutation p.D882N 0.44 tolerated(0.1) probably_damaging(0.967) TCGA-D3-A8GI-06 2 26699792 26699792 C T OTOF Silent p.K881K 0.44 TCGA-D3-A8GI-06 2 26739363 26739363 C T OTOF Silent p.K144K 0.34 TCGA-D3-A8GI-06 2 26804238 26804238 C T CIB4 Missense_Mutation p.G184E 0.54 tolerated_low_confidence(0.11) benign(0.058) TCGA-D3-A8GI-06 2 27259628 27259628 C T TMEM214 Silent p.A294A 0.25 TCGA-D3-A8GI-06 2 27359928 27359928 G A C2orf53 3'UTR 0.36 TCGA-D3-A8GI-06 2 27360818 27360818 G A C2orf53 Missense_Mutation p.S127F 0.50 tolerated(0.23) benign(0.014) TCGA-D3-A8GI-06 2 27373026 27373026 G A TCF23 Silent p.R86R 0.34 TCGA-D3-A8GI-06 2 27440467 27440467 C T CAD Silent p.P16P 0.25 TCGA-D3-A8GI-06 2 27799520 27799520 G A C2orf16 Missense_Mutation p.M27I 0.22 tolerated(0.25) benign(0.005) TCGA-D3-A8GI-06 2 27803959 27803959 G A C2orf16 Missense_Mutation p.G1507E 0.38 deleterious(0.03) unknown(0) TCGA-D3-A8GI-06 2 27804695 27804695 T A C2orf16 Missense_Mutation p.S1752R 0.34 tolerated(0.24) possibly_damaging(0.666) TCGA-D3-A8GI-06 2 27804776 27804776 G A C2orf16 Silent p.E1779E 0.35 TCGA-D3-A8GI-06 2 27850131 27850131 G A CCDC121 Missense_Mutation p.A341V 0.50 deleterious(0.02) benign(0.141) TCGA-D3-A8GI-06 2 27880500 27880500 G A SUPT7L Silent p.H152H 0.35 TCGA-D3-A8GI-06 2 27880501 27880501 T A SUPT7L Missense_Mutation p.H152L 0.35 tolerated(0.33) benign(0.001) TCGA-D3-A8GI-06 2 27900619 27900619 C T SLC4A1AP Missense_Mutation p.P531S 0.52 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 2 28117463 28117463 C T BRE Missense_Mutation p.L14F 0.27 deleterious(0.02) possibly_damaging(0.883) TCGA-D3-A8GI-06 2 28748134 28748134 C T PLB1 Missense_Mutation p.P82S 0.37 tolerated(0.81) benign(0.021) TCGA-D3-A8GI-06 2 28748135 28748135 C T PLB1 Missense_Mutation p.P82L 0.37 tolerated(0.31) benign(0) TCGA-D3-A8GI-06 2 29225437 29225437 C T FAM179A Missense_Mutation p.P155S 0.32 tolerated(0.24) benign(0.14) TCGA-D3-A8GI-06 2 29295932 29295932 T A C2orf71 Missense_Mutation p.Q399L 0.51 tolerated(0.14) possibly_damaging(0.549) TCGA-D3-A8GI-06 2 29416213 29416213 C T ALK Silent p.G1580G 0.35 TCGA-D3-A8GI-06 2 30973980 30973980 G A CAPN13 Nonsense_Mutation p.Q409* 0.54 TCGA-D3-A8GI-06 2 30993291 30993291 C T CAPN13 Missense_Mutation p.E138K 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A8GI-06 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.41 TCGA-D3-A8GI-06 2 31152353 31152353 C T GALNT14 Silent p.K358K 0.39 TCGA-D3-A8GI-06 2 31489079 31489079 C T EHD3 Missense_Mutation p.P373S 0.23 tolerated(1) benign(0) TCGA-D3-A8GI-06 2 31570447 31570447 G A XDH Missense_Mutation p.P1073S 0.35 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 2 32449780 32449780 C T NLRC4 Missense_Mutation p.G946E 0.42 tolerated(1) benign(0.008) TCGA-D3-A8GI-06 2 33002965 33002965 C T TTC27 Missense_Mutation p.S566F 0.40 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 2 33359851 33359851 C T LTBP1 Intron 0.44 TCGA-D3-A8GI-06 2 3392271 3392271 C T TRAPPC12 Missense_Mutation p.P293S 0.20 deleterious(0.01) possibly_damaging(0.841) TCGA-D3-A8GI-06 2 3652003 3652003 C T COLEC11 Missense_Mutation p.P39S 0.52 tolerated(0.29) benign(0.012) TCGA-D3-A8GI-06 2 37036041 37036041 C T VIT Missense_Mutation p.P606S 0.36 deleterious(0.03) possibly_damaging(0.607) TCGA-D3-A8GI-06 2 37292023 37292023 G A HEATR5B Missense_Mutation p.P482S 0.52 deleterious(0.01) possibly_damaging(0.591) TCGA-D3-A8GI-06 2 3730623 3730623 C T ALLC Missense_Mutation p.S157F 0.43 tolerated(0.18) benign(0.078) TCGA-D3-A8GI-06 2 38301564 38301564 G A CYP1B1 Missense_Mutation p.T323I 0.38 tolerated(0.33) probably_damaging(0.958) TCGA-D3-A8GI-06 2 38977258 38977258 G A SRSF7 Missense_Mutation p.P36L 0.23 deleterious(0.02) possibly_damaging(0.688) TCGA-D3-A8GI-06 2 39213189 39213189 G A SOS1 Missense_Mutation p.P1260S 0.55 tolerated_low_confidence(0.16) possibly_damaging(0.487) TCGA-D3-A8GI-06 2 39570591 39570591 C T MAP4K3 Missense_Mutation p.R83Q 0.51 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A8GI-06 2 40656586 40656586 C T SLC8A1 Missense_Mutation p.E279K 0.34 deleterious(0.01) possibly_damaging(0.758) TCGA-D3-A8GI-06 2 40657380 40657380 G A SLC8A1 Missense_Mutation p.S14L 0.22 tolerated_low_confidence(0.61) benign(0.002) TCGA-D3-A8GI-06 2 40657388 40657388 G A SLC8A1 Silent p.P11P 0.27 TCGA-D3-A8GI-06 2 43965591 43965591 G A PLEKHH2 Missense_Mutation p.E1019K 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 44040397 44040397 C T ABCG5 Missense_Mutation p.G605E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 44100942 44100942 G A ABCG8 Missense_Mutation p.D410N 0.47 tolerated(0.12) benign(0.146) TCGA-D3-A8GI-06 2 44100945 44100945 T A ABCG8 Missense_Mutation p.F411I 0.39 tolerated(0.09) benign(0.084) TCGA-D3-A8GI-06 2 46739133 46739133 G A ATP6V1E2 3'UTR 0.25 TCGA-D3-A8GI-06 2 47300900 47300900 C A TTC7A Silent p.A805A 0.31 TCGA-D3-A8GI-06 2 47702402 47702402 C T MSH2 Silent p.I666I 0.51 TCGA-D3-A8GI-06 2 48808167 48808167 C T STON1-GTF2A1L Missense_Mutation p.S132F 0.30 deleterious(0.01) possibly_damaging(0.867) TCGA-D3-A8GI-06 2 48808606 48808606 C T STON1-GTF2A1L Silent p.F278F 0.47 TCGA-D3-A8GI-06 2 48896993 48896993 G A STON1-GTF2A1L Missense_Mutation p.E1075K 0.36 deleterious(0.04) benign(0.013) TCGA-D3-A8GI-06 2 48915694 48915694 G A LHCGR Silent p.L414L 0.49 TCGA-D3-A8GI-06 2 49196001 49196001 G A FSHR Silent p.I230I 0.43 TCGA-D3-A8GI-06 2 49381507 49381507 C T FSHR Missense_Mutation p.G17E 0.31 tolerated(0.18) benign(0.055) TCGA-D3-A8GI-06 2 50692638 50692638 C T NRXN1 Nonsense_Mutation p.W1142* 0.48 TCGA-D3-A8GI-06 2 50733677 50733677 C T NRXN1 Missense_Mutation p.G858E 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 2 50779965 50779965 C T NRXN1 Missense_Mutation p.D547N 0.35 tolerated(0.1) probably_damaging(0.957) TCGA-D3-A8GI-06 2 50850723 50850723 C T NRXN1 Missense_Mutation p.G321E 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 2 50883527 50883527 G A NRXN1 Intron 0.70 TCGA-D3-A8GI-06 2 51254796 51254796 C T NRXN1 Missense_Mutation p.D206N 0.25 tolerated(0.5) benign(0.248) TCGA-D3-A8GI-06 2 51255010 51255010 C T NRXN1 Silent p.E134E 0.39 TCGA-D3-A8GI-06 2 55561899 55561899 G A CCDC88A Silent p.T686T 0.44 TCGA-D3-A8GI-06 2 60688432 60688432 C T BCL11A Missense_Mutation p.E539K 0.47 tolerated(0.55) benign(0.305) TCGA-D3-A8GI-06 2 60688755 60688755 G A BCL11A Missense_Mutation p.S431L 0.29 deleterious(0.02) benign(0.32) TCGA-D3-A8GI-06 2 60688847 60688847 C T BCL11A Silent p.T400T 0.49 TCGA-D3-A8GI-06 2 60688978 60688978 T G BCL11A Missense_Mutation p.T357P 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A8GI-06 2 60688981 60688981 C T BCL11A Missense_Mutation p.A356T 0.47 tolerated(0.21) possibly_damaging(0.449) TCGA-D3-A8GI-06 2 61236063 61236063 G A PUS10 Nonsense_Mutation p.R72* 0.31 TCGA-D3-A8GI-06 2 62104538 62104538 T C CCT4 Missense_Mutation p.K212E 0.52 deleterious(0.02) possibly_damaging(0.529) TCGA-D3-A8GI-06 2 63169952 63169952 A T EHBP1 Nonsense_Mutation p.K464* 0.45 TCGA-D3-A8GI-06 2 65299125 65299125 T C CEP68 Missense_Mutation p.Y299H 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 2 65492418 65492418 C T ACTR2 Intron 0.48 TCGA-D3-A8GI-06 2 68620370 68620370 C A PLEK Missense_Mutation p.P280H 0.41 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 2 69015057 69015057 C T ARHGAP25 Silent p.F145F 0.47 TCGA-D3-A8GI-06 2 69046321 69046321 C T ARHGAP25 Missense_Mutation p.S357F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 2 69049790 69049790 C T ARHGAP25 Missense_Mutation p.P507S 0.51 tolerated(0.11) benign(0.396) TCGA-D3-A8GI-06 2 69201757 69201757 C T GKN1 5'UTR 0.50 TCGA-D3-A8GI-06 2 69472600 69472600 C T ANTXR1 Missense_Mutation p.P560S 0.43 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 2 70890490 70890490 G A ADD2 3'UTR 0.46 TCGA-D3-A8GI-06 2 70933544 70933544 C T ADD2 5'UTR 0.58 TCGA-D3-A8GI-06 2 71039608 71039608 G A CLEC4F Silent p.L504L 0.53 TCGA-D3-A8GI-06 2 71062671 71062671 G A CD207 Silent p.I47I 0.47 TCGA-D3-A8GI-06 2 71192283 71192283 G A ATP6V1B1 3'UTR 0.32 TCGA-D3-A8GI-06 2 71211889 71211889 G A ANKRD53 Missense_Mutation p.R351K 0.42 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 2 71417067 71417067 G A PAIP2B Missense_Mutation p.P75S 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-D3-A8GI-06 2 73651770 73651770 C T ALMS1 Missense_Mutation p.S326F 0.47 probably_damaging(0.931) TCGA-D3-A8GI-06 2 74042682 74042682 C T C2orf78 Silent p.I444I 0.42 TCGA-D3-A8GI-06 2 74689584 74689584 G A MOGS Silent p.F444F 0.60 TCGA-D3-A8GI-06 2 75101422 75101422 G A HK2 Missense_Mutation p.E241K 0.22 tolerated(0.17) benign(0.131) TCGA-D3-A8GI-06 2 76975919 76975919 C T LRRTM4 Missense_Mutation p.E559K 0.42 tolerated_low_confidence(0.71) benign(0.022) TCGA-D3-A8GI-06 2 77746414 77746414 C T LRRTM4 Missense_Mutation p.R194Q 0.28 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A8GI-06 2 79254221 79254221 C T REG3G Missense_Mutation p.S86F 0.47 tolerated(0.08) benign(0.303) TCGA-D3-A8GI-06 2 79255042 79255042 G A REG3G Missense_Mutation p.S148N 0.40 deleterious(0.01) possibly_damaging(0.611) TCGA-D3-A8GI-06 2 80529451 80529451 C T LRRTM1 Silent p.E498E 0.33 TCGA-D3-A8GI-06 2 84800591 84800591 G A DNAH6 Missense_Mutation p.E602K 0.50 tolerated(0.39) benign(0.017) TCGA-D3-A8GI-06 2 85097811 85097811 G A TRABD2A Silent p.F69F 0.38 TCGA-D3-A8GI-06 2 85628705 85628705 C T CAPG Missense_Mutation p.G100S 0.61 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GI-06 2 85662195 85662195 G A SH2D6 Silent p.R39R 0.69 TCGA-D3-A8GI-06 2 85924703 85924703 C T GNLY Silent p.F110F 0.45 TCGA-D3-A8GI-06 2 85925749 85925749 C T GNLY 3'UTR 0.26 TCGA-D3-A8GI-06 2 87201356 87201356 A G RGPD1 Silent p.S470S 0.36 TCGA-D3-A8GI-06 2 88071761 88071761 G A RGPD2 Silent p.S1721S 0.27 TCGA-D3-A8GI-06 2 89416905 89416905 G A IGKV1-17 Silent p.F93F 0.54 TCGA-D3-A8GI-06 2 89513332 89513332 G A IGKV1-27 Silent p.L17L 0.55 TCGA-D3-A8GI-06 2 89521239 89521239 G A IGKV2-28 Silent p.I100I 0.45 TCGA-D3-A8GI-06 2 89619807 89619807 G A IGKV1-39 Silent p.L17L 0.43 TCGA-D3-A8GI-06 2 89987007 89987007 C T IGKV2D-29 Silent p.F96F 0.38 TCGA-D3-A8GI-06 2 90060865 90060865 C T IGKV6D-21 Missense_Mutation p.S71F 0.49 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GI-06 2 9484864 9484864 C T ASAP2 Nonsense_Mutation p.R320* 0.31 TCGA-D3-A8GI-06 2 95481252 95481252 C T ANKRD20A8P RNA 0.43 TCGA-D3-A8GI-06 2 95511134 95511134 C T RNU6-1320P 3'Flank 0.36 TCGA-D3-A8GI-06 2 95719188 95719188 G A MAL Nonsense_Mutation p.W150* 0.33 TCGA-D3-A8GI-06 2 96048995 96048995 C T KCNIP3 Nonsense_Mutation p.Q226* 0.50 TCGA-D3-A8GI-06 2 96691233 96691233 C T GPAT2 Missense_Mutation p.A453T 0.26 tolerated(0.31) possibly_damaging(0.682) TCGA-D3-A8GI-06 2 96795673 96795673 C T ASTL Nonsense_Mutation p.W255* 0.39 TCGA-D3-A8GI-06 2 96955088 96955088 G A SNRNP200 Silent p.H990H 0.31 TCGA-D3-A8GI-06 2 96955089 96955089 T A SNRNP200 Missense_Mutation p.H990L 0.31 deleterious(0) possibly_damaging(0.809) TCGA-D3-A8GI-06 2 96963176 96963176 G A SNRNP200 Silent p.S434S 0.45 TCGA-D3-A8GI-06 2 97514117 97514117 G A ANKRD39 Missense_Mutation p.A158V 0.26 tolerated(0.28) benign(0.185) TCGA-D3-A8GI-06 2 98275011 98275011 G A ACTR1B Missense_Mutation p.S179F 0.45 deleterious(0) possibly_damaging(0.797) TCGA-D3-A8GI-06 2 98375400 98375400 G A TMEM131 Missense_Mutation p.P1775S 0.41 tolerated_low_confidence(0.71) benign(0.265) TCGA-D3-A8GI-06 2 98709566 98709566 C T VWA3B Missense_Mutation p.S4L 0.42 tolerated_low_confidence(0.17) benign(0.01) TCGA-D3-A8GI-06 3 100148708 100148708 G A LNP1 Silent p.R45R 0.52 TCGA-D3-A8GI-06 3 100951726 100951726 A G IMPG2 Silent p.S1044S 0.42 TCGA-D3-A8GI-06 3 100963156 100963156 G A IMPG2 Silent p.S673S 0.49 TCGA-D3-A8GI-06 3 101232040 101232040 G A SENP7 5'Flank 0.47 TCGA-D3-A8GI-06 3 101283774 101283774 C T TRMT10C Missense_Mutation p.P50L 0.39 tolerated(0.11) benign(0.075) TCGA-D3-A8GI-06 3 101535681 101535681 C T NXPE3 Missense_Mutation p.P322L 0.38 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A8GI-06 3 102175112 102175112 G A ZPLD1 Missense_Mutation p.D151N 0.37 tolerated(0.36) benign(0.09) TCGA-D3-A8GI-06 3 102181215 102181215 G A ZPLD1 Missense_Mutation p.D241N 0.45 tolerated(0.42) benign(0.197) TCGA-D3-A8GI-06 3 10268109 10268109 G A IRAK2 Missense_Mutation p.V422I 0.45 tolerated(0.42) benign(0.181) TCGA-D3-A8GI-06 3 107096699 107096699 C T CCDC54 Missense_Mutation p.H89Y 0.47 deleterious(0.04) benign(0.024) TCGA-D3-A8GI-06 3 107096927 107096927 G A CCDC54 Missense_Mutation p.E165K 0.42 deleterious(0.04) benign(0.168) TCGA-D3-A8GI-06 3 107097220 107097220 C T CCDC54 Silent p.F262F 0.42 TCGA-D3-A8GI-06 3 107097260 107097260 C T CCDC54 Missense_Mutation p.L276F 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 107766047 107766047 G A CD47 3'UTR 0.61 TCGA-D3-A8GI-06 3 108074205 108074205 G A HHLA2 Nonsense_Mutation p.W221* 0.44 TCGA-D3-A8GI-06 3 108112937 108112937 C T MYH15 Missense_Mutation p.E1754K 0.50 deleterious(0.02) benign(0.088) TCGA-D3-A8GI-06 3 108129595 108129595 C T MYH15 Missense_Mutation p.A1464T 0.38 tolerated(0.14) benign(0.026) TCGA-D3-A8GI-06 3 108163606 108163606 C T MYH15 Missense_Mutation p.E866K 0.41 tolerated(0.05) benign(0.079) TCGA-D3-A8GI-06 3 108211365 108211365 C T MYH15 Missense_Mutation p.G305R 0.34 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GI-06 3 108474699 108474699 G A RETNLB Nonsense_Mutation p.Q88* 0.49 TCGA-D3-A8GI-06 3 108476055 108476055 G A RETNLB 5'UTR 0.42 TCGA-D3-A8GI-06 3 108572656 108572656 G A TRAT1 Missense_Mutation p.E165K 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 108572830 108572830 G A TRAT1 3'UTR 0.23 TCGA-D3-A8GI-06 3 108626780 108626780 G A GUCA1C 3'UTR 0.37 TCGA-D3-A8GI-06 3 108672634 108672634 C T GUCA1C 5'UTR 0.43 TCGA-D3-A8GI-06 3 108682385 108682385 G A MORC1 Missense_Mutation p.S892L 0.48 deleterious(0) benign(0.08) TCGA-D3-A8GI-06 3 108724071 108724071 C T MORC1 Missense_Mutation p.G620E 0.53 tolerated(0.09) benign(0.367) TCGA-D3-A8GI-06 3 108751625 108751625 C T MORC1 Missense_Mutation p.E503K 0.44 tolerated(0.19) benign(0.018) TCGA-D3-A8GI-06 3 108819293 108819293 G A MORC1 Silent p.F95F 0.34 TCGA-D3-A8GI-06 3 10886012 10886012 G A SLC6A11 Missense_Mutation p.G246E 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 109023393 109023393 G A DPPA2 Silent p.F261F 0.44 TCGA-D3-A8GI-06 3 109031452 109031452 C T DPPA2 Missense_Mutation p.E41K 0.37 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A8GI-06 3 109046826 109046826 C T DPPA4 3'UTR 0.39 TCGA-D3-A8GI-06 3 109049279 109049279 G A DPPA4 Intron 0.38 TCGA-D3-A8GI-06 3 10974883 10974883 G A SLC6A11 Missense_Mutation p.G473E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 10974884 10974884 G A SLC6A11 Silent p.G473G 0.40 TCGA-D3-A8GI-06 3 11067176 11067176 C T SLC6A1 Silent p.I252I 0.28 TCGA-D3-A8GI-06 3 111264049 111264049 C T CD96 Missense_Mutation p.P73L 0.39 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.37 deleterious(0) benign(0.02) TCGA-D3-A8GI-06 3 111632643 111632643 C T PHLDB2 Intron 0.40 TCGA-D3-A8GI-06 3 111923176 111923176 G A SLC9C1 Silent p.I687I 0.45 TCGA-D3-A8GI-06 3 111927207 111927207 G A SLC9C1 Missense_Mutation p.R602C 0.49 tolerated(0.06) benign(0.009) TCGA-D3-A8GI-06 3 11302007 11302007 G A HRH1 Nonsense_Mutation p.W428* 0.36 TCGA-D3-A8GI-06 3 113723335 113723335 C A KIAA1407 Intron 0.50 TCGA-D3-A8GI-06 3 113753983 113753983 G A KIAA1407 Missense_Mutation p.R203C 0.35 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 3 118645050 118645050 C T IGSF11 Missense_Mutation p.D160N 0.46 tolerated(0.69) possibly_damaging(0.818) TCGA-D3-A8GI-06 3 118948961 118948961 G A B4GALT4 5'UTR 0.44 TCGA-D3-A8GI-06 3 119336952 119336952 C T PLA1A Missense_Mutation p.P281S 0.42 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 3 119344041 119344041 C T PLA1A Silent p.F361F 0.50 TCGA-D3-A8GI-06 3 119434494 119434494 C T MAATS1 Missense_Mutation p.R196W 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 120764326 120764326 G A STXBP5L Nonsense_Mutation p.W138* 0.36 TCGA-D3-A8GI-06 3 121126264 121126264 G A STXBP5L Missense_Mutation p.G945E 0.34 tolerated(0.63) probably_damaging(0.956) TCGA-D3-A8GI-06 3 121132150 121132150 G A STXBP5L Missense_Mutation p.E1056K 0.37 deleterious(0.01) possibly_damaging(0.852) TCGA-D3-A8GI-06 3 121340783 121340783 G A FBXO40 Missense_Mutation p.M169I 0.26 tolerated(0.4) benign(0.037) TCGA-D3-A8GI-06 3 121650506 121650506 G A SLC15A2 Missense_Mutation p.R562K 0.45 tolerated(0.98) benign(0.001) TCGA-D3-A8GI-06 3 121712223 121712223 C T ILDR1 Missense_Mutation p.R458K 0.35 tolerated(0.35) probably_damaging(0.952) TCGA-D3-A8GI-06 3 121838367 121838367 G A CD86 Missense_Mutation p.D326N 0.48 tolerated(0.42) unknown(0) TCGA-D3-A8GI-06 3 121980876 121980876 G A CASR Missense_Mutation p.E332K 0.46 tolerated(0.06) benign(0.015) TCGA-D3-A8GI-06 3 122003129 122003129 G A CASR Silent p.L786L 0.38 TCGA-D3-A8GI-06 3 122289321 122289321 G A DTX3L Missense_Mutation p.G652E 0.35 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GI-06 3 122433251 122433251 C T PARP14 Silent p.S1325S 0.41 TCGA-D3-A8GI-06 3 122459905 122459905 G A HSPBAP1 Missense_Mutation p.A294V 0.40 deleterious(0.01) possibly_damaging(0.703) TCGA-D3-A8GI-06 3 122474157 122474157 G A HSPBAP1 Missense_Mutation p.P231S 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 122645391 122645391 G A SEMA5B Silent p.G382G 0.44 TCGA-D3-A8GI-06 3 123376078 123376078 G A MYLK Silent p.L1395L 0.50 TCGA-D3-A8GI-06 3 123419582 123419582 C T MYLK Silent p.S911S 0.34 TCGA-D3-A8GI-06 3 123428649 123428649 G A MYLK Silent p.L632L 0.44 TCGA-D3-A8GI-06 3 123987607 123987607 G A KALRN Silent p.V156V 0.38 TCGA-D3-A8GI-06 3 124157771 124157771 C T KALRN Missense_Mutation p.R1027W 0.29 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GI-06 3 124165712 124165712 G A KALRN Missense_Mutation p.E1176K 0.33 tolerated(0.05) benign(0.02) TCGA-D3-A8GI-06 3 12421261 12421261 C T PPARG Silent p.S47S 0.42 TCGA-D3-A8GI-06 3 124351470 124351470 C T KALRN Missense_Mutation p.R97C 0.38 tolerated(0.05) benign(0.009) TCGA-D3-A8GI-06 3 124352698 124352698 G A KALRN Silent p.K124K 0.36 TCGA-D3-A8GI-06 3 124515515 124515515 G A ITGB5 Silent p.P471P 0.53 TCGA-D3-A8GI-06 3 124646634 124646634 G A MUC13 Missense_Mutation p.P86S 0.46 tolerated_low_confidence(0.9) benign(0) TCGA-D3-A8GI-06 3 124731555 124731555 G A HEG1 Silent p.S956S 0.35 TCGA-D3-A8GI-06 3 124739811 124739811 G A HEG1 Silent p.F359F 0.44 TCGA-D3-A8GI-06 3 124951924 124951924 G A ZNF148 Missense_Mutation p.S549F 0.36 deleterious(0) possibly_damaging(0.58) TCGA-D3-A8GI-06 3 125876345 125876345 G A ALDH1L1 Silent p.L133L 0.46 TCGA-D3-A8GI-06 3 126160619 126160619 G A ZXDC Nonsense_Mutation p.Q795* 0.47 TCGA-D3-A8GI-06 3 126915881 126915881 C T C3orf56 Missense_Mutation p.P118L 0.42 tolerated(0.23) possibly_damaging(0.859) TCGA-D3-A8GI-06 3 127338108 127338108 G A MCM2 Missense_Mutation p.R751K 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 128182004 128182004 G A DNAJB8 Missense_Mutation p.R29C 0.36 deleterious(0.02) benign(0.054) TCGA-D3-A8GI-06 3 128813987 128813987 T A RAB43 Missense_Mutation p.Q77L 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 129150240 129150240 G A MBD4 3'UTR 0.39 TCGA-D3-A8GI-06 3 129151328 129151328 G A MBD4 Intron 0.39 TCGA-D3-A8GI-06 3 12953167 12953167 G A IQSEC1 Missense_Mutation p.S807F 0.35 deleterious(0) possibly_damaging(0.506) TCGA-D3-A8GI-06 3 129694770 129694770 G A TRH Silent p.A37A 0.29 TCGA-D3-A8GI-06 3 130095309 130095309 G A COL6A5 Silent p.K99K 0.36 TCGA-D3-A8GI-06 3 130095321 130095321 C T COL6A5 Silent p.F103F 0.40 TCGA-D3-A8GI-06 3 130095400 130095400 G A COL6A5 Missense_Mutation p.D130N 0.50 deleterious(0.04) possibly_damaging(0.831) TCGA-D3-A8GI-06 3 130159460 130159460 G A COL6A5 Missense_Mutation p.R2093K 0.45 tolerated(0.61) benign(0.009) TCGA-D3-A8GI-06 3 130287370 130287370 G A COL6A6 Missense_Mutation p.V775I 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A8GI-06 3 130292967 130292967 C T COL6A6 Missense_Mutation p.H1049Y 0.43 deleterious(0) benign(0.002) TCGA-D3-A8GI-06 3 130311944 130311944 G A COL6A6 Missense_Mutation p.E1471K 0.40 deleterious(0) benign(0.219) TCGA-D3-A8GI-06 3 131624150 131624150 G C CPNE4 Silent p.P46P 0.38 TCGA-D3-A8GI-06 3 132056369 132056369 G A ACPP Missense_Mutation p.E176K 0.48 deleterious(0.03) possibly_damaging(0.56) TCGA-D3-A8GI-06 3 132182620 132182620 G A DNAJC13 Silent p.A617A 0.34 TCGA-D3-A8GI-06 3 133193909 133193909 C T BFSP2 3'UTR 0.28 TCGA-D3-A8GI-06 3 133320191 133320191 G A TOPBP1 Missense_Mutation p.S1491L 0.33 tolerated(0.06) benign(0.003) TCGA-D3-A8GI-06 3 133473462 133473462 C T TF Missense_Mutation p.P150L 0.39 deleterious(0.02) possibly_damaging(0.897) TCGA-D3-A8GI-06 3 134197240 134197240 G A ANAPC13 3'UTR 0.46 TCGA-D3-A8GI-06 3 134322690 134322690 C T KY Missense_Mutation p.G573S 0.43 tolerated(1) benign(0.09) TCGA-D3-A8GI-06 3 135721862 135721862 G A PPP2R3A Missense_Mutation p.E508K 0.48 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D3-A8GI-06 3 137717743 137717743 C T CLDN18 Silent p.F11F 0.33 TCGA-D3-A8GI-06 3 137742518 137742518 G A CLDN18 Missense_Mutation p.R80Q 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 137790602 137790602 G A DZIP1L Missense_Mutation p.R500W 0.36 deleterious(0.01) possibly_damaging(0.724) TCGA-D3-A8GI-06 3 137822653 137822653 G A DZIP1L Missense_Mutation p.T54I 0.51 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A8GI-06 3 137850041 137850041 G A A4GNT Missense_Mutation p.L20F 0.42 tolerated(0.14) benign(0.049) TCGA-D3-A8GI-06 3 138119420 138119420 C T MRAS Silent p.V164V 0.43 TCGA-D3-A8GI-06 3 138413677 138413677 G A PIK3CB Missense_Mutation p.P615S 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-D3-A8GI-06 3 138665369 138665369 C T FOXL2 Missense_Mutation p.A66T 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 3 138669311 138669311 C T C3orf72 Missense_Mutation p.P142L 0.43 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-D3-A8GI-06 3 138739015 138739015 G A PRR23B Silent p.F163F 0.39 TCGA-D3-A8GI-06 3 138763169 138763169 G A PRR23C Silent p.I98I 0.56 TCGA-D3-A8GI-06 3 138763197 138763197 C T PRR23C Missense_Mutation p.R89Q 0.36 tolerated(1) benign(0.119) TCGA-D3-A8GI-06 3 140123566 140123566 G A CLSTN2 Missense_Mutation p.E199K 0.45 deleterious(0) possibly_damaging(0.782) TCGA-D3-A8GI-06 3 140281696 140281696 C T CLSTN2 Silent p.I752I 0.42 TCGA-D3-A8GI-06 3 140397227 140397227 C T TRIM42 Silent p.F52F 0.46 TCGA-D3-A8GI-06 3 140401623 140401623 G A TRIM42 Missense_Mutation p.E221K 0.50 tolerated(0.18) benign(0.05) TCGA-D3-A8GI-06 3 141289871 141289871 T A RASA2 Silent p.G327G 0.40 TCGA-D3-A8GI-06 3 1414521 1414521 G A CNTN6 Splice_Site p.X557_splice 0.38 TCGA-D3-A8GI-06 3 141682662 141682662 G A TFDP2 Silent p.S292S 0.42 TCGA-D3-A8GI-06 3 142232351 142232351 G A ATR Nonsense_Mutation p.Q1545* 0.41 TCGA-D3-A8GI-06 3 142388321 142388321 G A PLS1 Missense_Mutation p.E54K 0.39 tolerated(0.05) benign(0.044) TCGA-D3-A8GI-06 3 142681170 142681170 G A PAQR9 Missense_Mutation p.L337F 0.43 deleterious(0.03) probably_damaging(0.986) TCGA-D3-A8GI-06 3 142987754 142987754 G A SLC9A9 Missense_Mutation p.P558L 0.36 tolerated(0.16) probably_damaging(0.999) TCGA-D3-A8GI-06 3 143292961 143292961 G A SLC9A9 Silent p.A323A 0.35 TCGA-D3-A8GI-06 3 14558693 14558693 C T GRIP2 RNA 0.43 TCGA-D3-A8GI-06 3 146307548 146307548 T C PLSCR5 Silent p.S223S 0.55 TCGA-D3-A8GI-06 3 147114198 147114198 G A ZIC4 Silent p.F93F 0.47 TCGA-D3-A8GI-06 3 14712474 14712474 C T CCDC174 Missense_Mutation p.P393S 0.32 deleterious(0) possibly_damaging(0.857) TCGA-D3-A8GI-06 3 147131271 147131271 C T ZIC1 Missense_Mutation p.S426F 0.31 deleterious(0.02) benign(0.136) TCGA-D3-A8GI-06 3 14803106 14803106 G A C3orf20 Missense_Mutation p.D827N 0.44 tolerated(0.1) benign(0.082) TCGA-D3-A8GI-06 3 148545858 148545858 G A CPB1 Silent p.T47T 0.42 TCGA-D3-A8GI-06 3 148596518 148596518 C T CPA3 Missense_Mutation p.P153S 0.40 tolerated(0.26) benign(0.129) TCGA-D3-A8GI-06 3 148601405 148601405 C T CPA3 Missense_Mutation p.P262S 0.42 tolerated(0.08) benign(0.004) TCGA-D3-A8GI-06 3 149089356 149089356 G A TM4SF1 Intron 0.46 TCGA-D3-A8GI-06 3 150644621 150644621 G A CLRN1 3'Flank 0.41 TCGA-D3-A8GI-06 3 15065632 15065632 C T NR2C2 Missense_Mutation p.L258F 0.42 deleterious(0.03) probably_damaging(0.949) TCGA-D3-A8GI-06 3 150840586 150840586 G C MED12L Missense_Mutation p.S74T 0.23 tolerated(0.07) probably_damaging(0.952) TCGA-D3-A8GI-06 3 150845615 150845615 C T MED12L Missense_Mutation p.P134S 0.48 deleterious(0.02) possibly_damaging(0.651) TCGA-D3-A8GI-06 3 150883255 150883255 C T MED12L Missense_Mutation p.R436C 0.45 deleterious(0) benign(0.025) TCGA-D3-A8GI-06 3 150916703 150916703 G A GPR171 Silent p.I157I 0.45 TCGA-D3-A8GI-06 3 150931709 150931709 G A P2RY14 Silent p.I132I 0.40 TCGA-D3-A8GI-06 3 151055717 151055717 C T P2RY12 Missense_Mutation p.R306K 0.46 tolerated(0.1) benign(0.006) TCGA-D3-A8GI-06 3 151154844 151154844 C T IGSF10 Missense_Mutation p.G2502E 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 151451863 151451863 C T AADACL2 Missense_Mutation p.L14F 0.38 tolerated(0.19) unknown(0) TCGA-D3-A8GI-06 3 151542595 151542595 G A AADAC Silent p.G192G 0.39 TCGA-D3-A8GI-06 3 151598679 151598679 C T SUCNR1 Silent p.I116I 0.41 TCGA-D3-A8GI-06 3 151598854 151598854 T A SUCNR1 Missense_Mutation p.F175I 0.47 deleterious(0) possibly_damaging(0.827) TCGA-D3-A8GI-06 3 154138902 154138902 G A GPR149 Missense_Mutation p.H517Y 0.49 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 3 154898211 154898211 C T MME Missense_Mutation p.S739L 0.45 deleterious(0) benign(0.213) TCGA-D3-A8GI-06 3 15518700 15518700 C T COLQ Missense_Mutation p.R133K 0.36 tolerated(0.09) unknown(0) TCGA-D3-A8GI-06 3 155199200 155199200 G A PLCH1 Missense_Mutation p.R1547W 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 155200482 155200482 C T PLCH1 Silent p.G1119G 0.46 TCGA-D3-A8GI-06 3 155232632 155232632 C T PLCH1 Silent p.R492R 0.44 TCGA-D3-A8GI-06 3 155493615 155493615 G A C3orf33 Missense_Mutation p.S23L 0.36 tolerated(0.3) benign(0.031) TCGA-D3-A8GI-06 3 156763262 156763262 C T LEKR1 Missense_Mutation p.S601F 0.43 deleterious(0.02) possibly_damaging(0.683) TCGA-D3-A8GI-06 3 160786666 160786666 G A PPM1L Silent p.G268G 0.35 TCGA-D3-A8GI-06 3 160787000 160787000 C T PPM1L 3'UTR 0.44 TCGA-D3-A8GI-06 3 160804139 160804139 T C B3GALNT1 Missense_Mutation p.D135G 0.33 deleterious(0.01) possibly_damaging(0.871) TCGA-D3-A8GI-06 3 16216751 16216751 G A GALNT15 Silent p.A31A 0.35 TCGA-D3-A8GI-06 3 16217108 16217108 C T GALNT15 Silent p.T150T 0.27 TCGA-D3-A8GI-06 3 16268927 16268927 G A GALNT15 Missense_Mutation p.D614N 0.48 tolerated(0.11) benign(0.04) TCGA-D3-A8GI-06 3 164712091 164712091 C T SI Missense_Mutation p.E1599K 0.35 tolerated(0.73) benign(0.414) TCGA-D3-A8GI-06 3 164724721 164724721 C T SI Missense_Mutation p.G1430E 0.47 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 3 164758813 164758813 G A SI Missense_Mutation p.R692C 0.34 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 3 164760888 164760888 A G SI Missense_Mutation p.F655L 0.46 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 3 164766955 164766955 G A SI Missense_Mutation p.H559Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 3 164907014 164907014 C T SLITRK3 Silent p.R535R 0.44 TCGA-D3-A8GI-06 3 167031835 167031835 G A ZBBX Silent p.F448F 0.41 TCGA-D3-A8GI-06 3 167033611 167033611 C T ZBBX Missense_Mutation p.E401K 0.39 deleterious(0.03) benign(0.377) TCGA-D3-A8GI-06 3 167045776 167045776 T A ZBBX Silent p.G272G 0.38 TCGA-D3-A8GI-06 3 167045777 167045777 C T ZBBX Missense_Mutation p.G272E 0.38 deleterious(0.02) benign(0.212) TCGA-D3-A8GI-06 3 167045778 167045778 C T ZBBX Missense_Mutation p.G272R 0.38 tolerated(0.06) benign(0.141) TCGA-D3-A8GI-06 3 167183171 167183171 G A SERPINI2 Missense_Mutation p.S230F 0.47 tolerated(0.08) benign(0.038) TCGA-D3-A8GI-06 3 167217965 167217965 G A WDR49 Silent p.L651L 0.44 TCGA-D3-A8GI-06 3 167272570 167272570 C T WDR49 Missense_Mutation p.G223E 0.33 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 3 167728167 167728167 G A GOLIM4 Nonsense_Mutation p.R661* 0.36 TCGA-D3-A8GI-06 3 168812978 168812978 G A MECOM Missense_Mutation p.R846C 0.28 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GI-06 3 169487392 169487392 C A ACTRT3 5'UTR 0.53 TCGA-D3-A8GI-06 3 169555391 169555391 G A LRRIQ4 Missense_Mutation p.G552E 0.33 tolerated_low_confidence(1) unknown(0) TCGA-D3-A8GI-06 3 169574577 169574577 G A LRRC31 Missense_Mutation p.L191F 0.46 tolerated(0.1) benign(0.071) TCGA-D3-A8GI-06 3 169574578 169574578 G A LRRC31 Silent p.I190I 0.45 TCGA-D3-A8GI-06 3 169644774 169644774 G A SAMD7 Missense_Mutation p.E242K 0.42 tolerated(0.3) benign(0.346) TCGA-D3-A8GI-06 3 170198687 170198687 C T SLC7A14 Missense_Mutation p.E462K 0.44 tolerated(0.38) benign(0.035) TCGA-D3-A8GI-06 3 170216621 170216621 G A SLC7A14 Silent p.I198I 0.44 TCGA-D3-A8GI-06 3 170218933 170218933 C T SLC7A14 Nonsense_Mutation p.W169* 0.46 TCGA-D3-A8GI-06 3 17052732 17052732 G A PLCL2 Missense_Mutation p.E506K 0.40 tolerated(0.07) benign(0.158) TCGA-D3-A8GI-06 3 170802918 170802918 G A TNIK Missense_Mutation p.S996L 0.56 tolerated(0.55) benign(0.23) TCGA-D3-A8GI-06 3 170884973 170884973 G A TNIK Missense_Mutation p.P287L 0.28 deleterious(0.05) unknown(0) TCGA-D3-A8GI-06 3 171452666 171452666 G A PLD1 Missense_Mutation p.L177F 0.37 tolerated(0.17) benign(0.002) TCGA-D3-A8GI-06 3 172055123 172055123 C T FNDC3B Missense_Mutation p.P595L 0.32 deleterious(0) benign(0.437) TCGA-D3-A8GI-06 3 172351176 172351176 G A NCEH1 3'UTR 0.48 TCGA-D3-A8GI-06 3 172365803 172365803 C T NCEH1 Silent p.V112V 0.41 TCGA-D3-A8GI-06 3 172835539 172835539 C T SPATA16 Intron 0.48 TCGA-D3-A8GI-06 3 173998611 173998611 C T NLGN1 Missense_Mutation p.P664S 0.48 tolerated(0.37) benign(0.007) TCGA-D3-A8GI-06 3 17448089 17448089 G A TBC1D5 Intron 0.40 TCGA-D3-A8GI-06 3 175473010 175473010 G A NAALADL2 Missense_Mutation p.D665N 0.21 tolerated(0.24) benign(0.004) TCGA-D3-A8GI-06 3 178543421 178543421 G A KCNMB2 Silent p.R34R 0.37 TCGA-D3-A8GI-06 3 178742892 178742892 G A ZMAT3 Silent p.F261F 0.41 TCGA-D3-A8GI-06 3 180366002 180366002 T C CCDC39 Missense_Mutation p.Q438R 0.45 tolerated(0.82) benign(0.001) TCGA-D3-A8GI-06 3 182871599 182871599 C T LAMP3 Silent p.T210T 0.43 TCGA-D3-A8GI-06 3 183041079 183041079 G A MCF2L2 Missense_Mutation p.R183W 0.43 deleterious(0) possibly_damaging(0.849) TCGA-D3-A8GI-06 3 183097194 183097194 G A MCF2L2 Nonsense_Mutation p.R56* 0.51 TCGA-D3-A8GI-06 3 183706465 183706465 G A ABCC5 Missense_Mutation p.S113L 0.42 deleterious(0.04) possibly_damaging(0.477) TCGA-D3-A8GI-06 3 183756159 183756159 G A HTR3D Silent p.V294V 0.47 TCGA-D3-A8GI-06 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.41 tolerated(0.6) benign(0.016) TCGA-D3-A8GI-06 3 18390609 18390609 C T SATB1 3'UTR 0.90 TCGA-D3-A8GI-06 3 183907661 183907661 C T ABCF3 Missense_Mutation p.R445C 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 184091358 184091358 C T THPO Missense_Mutation p.A81T 0.33 tolerated(0.05) probably_damaging(0.996) TCGA-D3-A8GI-06 3 18436276 18436276 G A SATB1 Missense_Mutation p.S295F 0.38 tolerated(0.17) benign(0.424) TCGA-D3-A8GI-06 3 184922529 184922529 G A EHHADH Silent p.S195S 0.45 TCGA-D3-A8GI-06 3 185191097 185191097 G A MAP3K13 Missense_Mutation p.G660R 0.33 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D3-A8GI-06 3 186370193 186370193 C T FETUB Missense_Mutation p.P308S 0.43 deleterious(0.03) possibly_damaging(0.468) TCGA-D3-A8GI-06 3 186386724 186386724 G A HRG Missense_Mutation p.E62K 0.38 tolerated(0.08) possibly_damaging(0.621) TCGA-D3-A8GI-06 3 186505133 186505133 C T EIF4A2 Intron 0.40 TCGA-D3-A8GI-06 3 186917694 186917694 G A RTP1 Missense_Mutation p.E210K 0.38 tolerated(0.22) benign(0.028) TCGA-D3-A8GI-06 3 186943271 186943271 C T MASP1 Missense_Mutation p.E528K 0.48 tolerated(0.87) benign(0.004) TCGA-D3-A8GI-06 3 186980467 186980467 C T MASP1 Silent p.R93R 0.42 TCGA-D3-A8GI-06 3 187419960 187419960 G A RTP2 5'UTR 0.46 TCGA-D3-A8GI-06 3 187420052 187420052 C T RTP2 5'UTR 0.72 TCGA-D3-A8GI-06 3 189456461 189456461 G A TP63 Silent p.L74L 0.58 TCGA-D3-A8GI-06 3 189612374 189612374 C T TP63 3'UTR 0.50 TCGA-D3-A8GI-06 3 189690667 189690667 C G LEPREL1 Silent p.L565L 0.38 TCGA-D3-A8GI-06 3 190030693 190030693 G A CLDN1 Missense_Mutation p.A119V 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GI-06 3 190122603 190122603 G A CLDN16 Silent p.G160G 0.47 TCGA-D3-A8GI-06 3 191087823 191087823 G A CCDC50 Missense_Mutation p.G149E 0.46 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A8GI-06 3 192078223 192078223 C T FGF12 Missense_Mutation p.D102N 0.34 tolerated(0.59) benign(0.002) TCGA-D3-A8GI-06 3 193120578 193120578 G A ATP13A4 Missense_Mutation p.R1152W 0.37 deleterious(0) possibly_damaging(0.855) TCGA-D3-A8GI-06 3 193132376 193132376 C T ATP13A4 Silent p.E1002E 0.36 TCGA-D3-A8GI-06 3 194062448 194062448 G A CPN2 Silent p.L328L 0.42 TCGA-D3-A8GI-06 3 194080383 194080383 G A LRRC15 Missense_Mutation p.L470F 0.43 deleterious(0.01) benign(0.394) TCGA-D3-A8GI-06 3 194126658 194126658 G A ATP13A3 Missense_Mutation p.T1224I 0.32 deleterious_low_confidence(0.03) benign(0.117) TCGA-D3-A8GI-06 3 194336336 194336336 G A TMEM44 Missense_Mutation p.L339F 0.43 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GI-06 3 195452731 195452731 C T MUC20 Silent p.I419I 0.21 TCGA-D3-A8GI-06 3 195453296 195453296 C T MUC20 Missense_Mutation p.P608S 0.16 tolerated(0.11) unknown(0) TCGA-D3-A8GI-06 3 195460053 195460053 C T MUC20 Silent p.H698H 0.38 TCGA-D3-A8GI-06 3 195479276 195479276 C T MUC4 Missense_Mutation p.E5184K 0.36 benign(0.092) TCGA-D3-A8GI-06 3 195488361 195488361 T - MUC4 Frame_Shift_Del p.M4870* 0.32 TCGA-D3-A8GI-06 3 195495989 195495989 C T MUC4 Missense_Mutation p.G4478E 0.36 probably_damaging(0.993) TCGA-D3-A8GI-06 3 195516830 195516830 C T MUC4 Missense_Mutation p.E541K 0.47 unknown(0) TCGA-D3-A8GI-06 3 195611800 195611800 G A TNK2 Silent p.P176P 0.50 TCGA-D3-A8GI-06 3 196050868 196050868 C T TM4SF19 Silent p.R150R 0.44 TCGA-D3-A8GI-06 3 196096312 196096312 G A UBXN7 Missense_Mutation p.S229F 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 3 196735548 196735548 G A MFI2 Missense_Mutation p.T577I 0.46 tolerated(0.17) probably_damaging(0.99) TCGA-D3-A8GI-06 3 21467078 21467078 C T ZNF385D Missense_Mutation p.G253E 0.40 tolerated(0.88) possibly_damaging(0.617) TCGA-D3-A8GI-06 3 21552408 21552408 C T ZNF385D Silent p.K128K 0.35 TCGA-D3-A8GI-06 3 24164611 24164611 G A THRB Missense_Mutation p.P384S 0.35 tolerated(0.49) benign(0.027) TCGA-D3-A8GI-06 3 2613165 2613165 C T CNTN4 5'UTR 0.37 TCGA-D3-A8GI-06 3 27473001 27473001 G T SLC4A7 Missense_Mutation p.P304H 0.45 tolerated(0.1) possibly_damaging(0.705) TCGA-D3-A8GI-06 3 29529937 29529937 G A RBMS3 Missense_Mutation p.G85E 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 3 3067908 3067908 G A CNTN4 Missense_Mutation p.G537R 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GI-06 3 3081733 3081733 G A CNTN4 Missense_Mutation p.E726K 0.37 deleterious(0.03) possibly_damaging(0.688) TCGA-D3-A8GI-06 3 3131924 3131924 C T IL5RA Intron 0.35 TCGA-D3-A8GI-06 3 31663662 31663662 C T STT3B Silent p.V467V 0.43 TCGA-D3-A8GI-06 3 33166002 33166002 G A CRTAP Missense_Mutation p.E242K 0.43 tolerated(0.49) benign(0.043) TCGA-D3-A8GI-06 3 33194828 33194828 G A SUSD5 Silent p.T432T 0.44 TCGA-D3-A8GI-06 3 33644495 33644495 T G CLASP2 Missense_Mutation p.S626R 0.48 tolerated(0.14) benign(0.046) TCGA-D3-A8GI-06 3 35833970 35833970 G A ARPP21 Missense_Mutation p.G711E 0.44 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GI-06 3 36545914 36545914 G A STAC Missense_Mutation p.D266N 0.45 tolerated(0.25) benign(0.006) TCGA-D3-A8GI-06 3 36547319 36547319 G A STAC Missense_Mutation p.E305K 0.45 deleterious(0.04) possibly_damaging(0.745) TCGA-D3-A8GI-06 3 36778774 36778774 C T DCLK3 Missense_Mutation p.M459I 0.40 tolerated(0.35) benign(0.004) TCGA-D3-A8GI-06 3 36872942 36872942 G A TRANK1 Missense_Mutation p.S2667F 0.42 tolerated(0.08) benign(0.013) TCGA-D3-A8GI-06 3 36873559 36873559 G A TRANK1 Silent p.S2461S 0.41 TCGA-D3-A8GI-06 3 36873661 36873661 C T TRANK1 Nonsense_Mutation p.W2427* 0.50 TCGA-D3-A8GI-06 3 36873712 36873712 G A TRANK1 Silent p.A2410A 0.40 TCGA-D3-A8GI-06 3 36873919 36873919 C T TRANK1 Silent p.G2341G 0.42 TCGA-D3-A8GI-06 3 36875113 36875113 G A TRANK1 Silent p.F1943F 0.37 TCGA-D3-A8GI-06 3 36876287 36876287 C T TRANK1 Missense_Mutation p.E1833K 0.41 tolerated(0.1) benign(0.035) TCGA-D3-A8GI-06 3 36879982 36879982 C T TRANK1 Missense_Mutation p.E1756K 0.34 tolerated(0.16) benign(0.023) TCGA-D3-A8GI-06 3 36898248 36898248 G A TRANK1 Nonsense_Mutation p.Q945* 0.38 TCGA-D3-A8GI-06 3 36898710 36898710 C T TRANK1 Missense_Mutation p.E791K 0.40 deleterious(0) probably_damaging(0.945) TCGA-D3-A8GI-06 3 38043327 38043327 C T VILL Silent p.F485F 0.42 TCGA-D3-A8GI-06 3 38050560 38050560 C T PLCD1 Missense_Mutation p.E587K 0.45 deleterious(0.01) benign(0.163) TCGA-D3-A8GI-06 3 38125723 38125723 C T DLEC1 Silent p.F416F 0.47 TCGA-D3-A8GI-06 3 38129876 38129876 G A DLEC1 Silent p.V554V 0.42 TCGA-D3-A8GI-06 3 38134291 38134291 C T DLEC1 Missense_Mutation p.S559F 0.39 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 3 38139052 38139052 C T DLEC1 Missense_Mutation p.P830L 0.45 tolerated(0.66) benign(0.012) TCGA-D3-A8GI-06 3 38149950 38149950 C T DLEC1 Silent p.L1025L 0.54 TCGA-D3-A8GI-06 3 38401846 38401846 C T XYLB Missense_Mutation p.H53Y 0.38 tolerated(0.36) benign(0.224) TCGA-D3-A8GI-06 3 38627305 38627305 G A SCN5A Silent p.F888F 0.45 TCGA-D3-A8GI-06 3 38639352 38639352 C T SCN5A Silent p.V710V 0.46 TCGA-D3-A8GI-06 3 38647489 38647489 C T SCN5A Missense_Mutation p.E431K 0.49 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GI-06 3 38655231 38655231 C T SCN5A Intron 0.62 TCGA-D3-A8GI-06 3 38743588 38743588 C T SCN10A Missense_Mutation p.G1467S 0.37 deleterious(0.01) benign(0.356) TCGA-D3-A8GI-06 3 38768370 38768370 G A SCN10A Silent p.F938F 0.30 TCGA-D3-A8GI-06 3 38768433 38768433 G A SCN10A Silent p.I917I 0.36 TCGA-D3-A8GI-06 3 38770042 38770042 C T SCN10A Silent p.G877G 0.46 TCGA-D3-A8GI-06 3 38770264 38770264 C T SCN10A Silent p.L803L 0.46 TCGA-D3-A8GI-06 3 38793949 38793949 G A SCN10A Missense_Mutation p.H506Y 0.40 tolerated(0.22) benign(0.303) TCGA-D3-A8GI-06 3 38793950 38793950 G A SCN10A Silent p.F505F 0.42 TCGA-D3-A8GI-06 3 3887894 3887894 T A LRRN1 Silent p.G523G 0.40 TCGA-D3-A8GI-06 3 3888484 3888484 G A LRRN1 3'UTR 0.41 TCGA-D3-A8GI-06 3 38888258 38888258 G A SCN11A Missense_Mutation p.S1768L 0.38 tolerated(0.08) benign(0.01) TCGA-D3-A8GI-06 3 38888397 38888397 C T SCN11A Missense_Mutation p.E1722K 0.38 tolerated(0.09) probably_damaging(0.997) TCGA-D3-A8GI-06 3 38888415 38888415 G A SCN11A Missense_Mutation p.P1716S 0.46 deleterious(0.01) possibly_damaging(0.868) TCGA-D3-A8GI-06 3 38888896 38888896 G A SCN11A Silent p.S1555S 0.38 TCGA-D3-A8GI-06 3 38892120 38892120 G A SCN11A Silent p.A1393A 0.35 TCGA-D3-A8GI-06 3 38927658 38927658 G A SCN11A Silent p.F969F 0.36 TCGA-D3-A8GI-06 3 38936036 38936036 C T SCN11A Silent p.E941E 0.40 TCGA-D3-A8GI-06 3 38936198 38936198 C T SCN11A Missense_Mutation p.M887I 0.45 tolerated(0.56) benign(0.003) TCGA-D3-A8GI-06 3 39307302 39307302 G A CX3CR1 Silent p.I265I 0.51 TCGA-D3-A8GI-06 3 39543626 39543626 C T MOBP Silent p.F22F 0.42 TCGA-D3-A8GI-06 3 40231805 40231805 G A MYRIP Missense_Mutation p.E506K 0.43 tolerated(0.07) possibly_damaging(0.811) TCGA-D3-A8GI-06 3 41277315 41277315 C T CTNNB1 Missense_Mutation p.T595I 0.36 tolerated(0.43) possibly_damaging(0.457) TCGA-D3-A8GI-06 3 419500 419500 G A CHL1 Splice_Site p.X584_splice 0.37 TCGA-D3-A8GI-06 3 41957541 41957541 G A ULK4 Missense_Mutation p.S244F 0.38 tolerated(0.17) benign(0.217) TCGA-D3-A8GI-06 3 42594857 42594857 G A SEC22C Silent p.Y265Y 0.45 TCGA-D3-A8GI-06 3 42597440 42597440 G A SEC22C Silent p.F231F 0.34 TCGA-D3-A8GI-06 3 42599177 42599177 G A SEC22C Nonsense_Mutation p.R180* 0.40 TCGA-D3-A8GI-06 3 42740281 42740281 A C HHATL Silent p.L134L 0.48 TCGA-D3-A8GI-06 3 43122480 43122480 G A POMGNT2 Silent p.F148F 0.35 TCGA-D3-A8GI-06 3 43122635 43122635 G A POMGNT2 Missense_Mutation p.H97Y 0.37 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GI-06 3 436528 436528 G A CHL1 Missense_Mutation p.E1023K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GI-06 3 44541754 44541754 G A ZNF852 Missense_Mutation p.S172L 0.45 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 3 44636608 44636608 G A ZNF660 Missense_Mutation p.G308E 0.42 deleterious(0.04) possibly_damaging(0.739) TCGA-D3-A8GI-06 3 45707147 45707147 A G LIMD1 Missense_Mutation p.K506E 0.40 deleterious(0.01) benign(0.098) TCGA-D3-A8GI-06 3 45807031 45807031 G A SLC6A20 Missense_Mutation p.S434L 0.25 deleterious(0) benign(0.031) TCGA-D3-A8GI-06 3 46009549 46009549 G A FYCO1 Missense_Mutation p.A426V 0.47 tolerated(0.22) benign(0.004) TCGA-D3-A8GI-06 3 46062849 46062849 G A XCR1 Silent p.S197S 0.36 TCGA-D3-A8GI-06 3 46399086 46399086 T C CCR2 Missense_Mutation p.F23S 0.38 tolerated(0.8) benign(0.001) TCGA-D3-A8GI-06 3 46449856 46449856 C T CCRL2 Missense_Mutation p.H108Y 0.36 tolerated(0.38) benign(0.023) TCGA-D3-A8GI-06 3 46496872 46496872 T C LTF Missense_Mutation p.N187S 0.43 tolerated(0.4) benign(0.001) TCGA-D3-A8GI-06 3 46497320 46497320 C T LTF Silent p.L155L 0.40 TCGA-D3-A8GI-06 3 46497447 46497447 G A LTF Missense_Mutation p.A113V 0.42 tolerated(0.08) probably_damaging(0.918) TCGA-D3-A8GI-06 3 4687402 4687402 G A ITPR1 Nonsense_Mutation p.W282* 0.52 TCGA-D3-A8GI-06 3 4693882 4693882 G A ITPR1 Missense_Mutation p.G311R 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 47467539 47467539 G A SCAP Silent p.I286I 0.48 TCGA-D3-A8GI-06 3 47552699 47552699 G A ELP6 Silent p.L24L 0.44 TCGA-D3-A8GI-06 3 48461315 48461315 G A PLXNB1 Missense_Mutation p.P794S 0.60 tolerated(0.43) probably_damaging(0.998) TCGA-D3-A8GI-06 3 48561150 48561150 G A PFKFB4 Silent p.F402F 0.48 TCGA-D3-A8GI-06 3 48581039 48581039 G A PFKFB4 Missense_Mutation p.L118F 0.29 benign(0.14) TCGA-D3-A8GI-06 3 48600243 48600243 G A UCN2 Silent p.I105I 0.62 TCGA-D3-A8GI-06 3 48613838 48613838 C T COL7A1 Missense_Mutation p.E1923K 0.41 unknown(0) TCGA-D3-A8GI-06 3 48620994 48620994 C T COL7A1 Missense_Mutation p.E1466K 0.37 unknown(0) TCGA-D3-A8GI-06 3 48627049 48627049 G A COL7A1 Missense_Mutation p.S718F 0.40 unknown(0) TCGA-D3-A8GI-06 3 48638130 48638130 G A UQCRC1 Silent p.F370F 0.33 TCGA-D3-A8GI-06 3 48719841 48719841 G A NCKIPSD Silent p.F142F 0.42 TCGA-D3-A8GI-06 3 49081933 49081933 A T QRICH1 Missense_Mutation p.L559H 0.41 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GI-06 3 49094385 49094385 C T QRICH1 Nonsense_Mutation p.W416* 0.43 TCGA-D3-A8GI-06 3 49311534 49311534 C T C3orf62 Missense_Mutation p.M162I 0.36 tolerated(0.42) benign(0.002) TCGA-D3-A8GI-06 3 49311535 49311535 A G C3orf62 Missense_Mutation p.M162T 0.36 tolerated(0.2) benign(0.069) TCGA-D3-A8GI-06 3 49397559 49397559 G A RHOA 3'UTR 0.36 TCGA-D3-A8GI-06 3 49452364 49452364 C T TCTA 3'UTR 0.36 TCGA-D3-A8GI-06 3 49452365 49452365 C T TCTA 3'UTR 0.36 TCGA-D3-A8GI-06 3 49689277 49689277 C T BSN Missense_Mutation p.S763F 0.40 unknown(0) TCGA-D3-A8GI-06 3 49693204 49693204 G A BSN Missense_Mutation p.R2072K 0.42 unknown(0) TCGA-D3-A8GI-06 3 49695103 49695103 C T BSN Missense_Mutation p.S2705L 0.40 unknown(0) TCGA-D3-A8GI-06 3 50214264 50214264 C T SEMA3F Missense_Mutation p.P205S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 3 50220412 50220412 C T SEMA3F Missense_Mutation p.P327S 0.20 deleterious(0) possibly_damaging(0.61) TCGA-D3-A8GI-06 3 50220413 50220413 C T SEMA3F Missense_Mutation p.P327L 0.20 tolerated(0.08) benign(0.393) TCGA-D3-A8GI-06 3 50253024 50253024 G A SLC38A3 RNA 0.51 TCGA-D3-A8GI-06 3 50257341 50257341 C T SLC38A3 RNA 0.44 TCGA-D3-A8GI-06 3 50293621 50293621 C T GNAI2 Intron 0.48 TCGA-D3-A8GI-06 3 50329948 50329948 G A IFRD2 5'Flank 0.50 TCGA-D3-A8GI-06 3 50416404 50416404 G A CACNA2D2 Silent p.S427S 0.43 TCGA-D3-A8GI-06 3 51264714 51264714 G A DOCK3 Missense_Mutation p.D460N 0.34 tolerated(0.28) possibly_damaging(0.87) TCGA-D3-A8GI-06 3 51398028 51398028 G A DOCK3 Missense_Mutation p.M1657I 0.55 tolerated(0.27) benign(0.013) TCGA-D3-A8GI-06 3 51399328 51399328 C T DOCK3 Missense_Mutation p.S1682F 0.27 deleterious(0) possibly_damaging(0.907) TCGA-D3-A8GI-06 3 51452093 51452093 G A VPRBP Silent p.I845I 0.39 TCGA-D3-A8GI-06 3 51696840 51696840 C T RAD54L2 Missense_Mutation p.R1270W 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-D3-A8GI-06 3 51928911 51928911 C T IQCF1 Missense_Mutation p.E205K 0.47 tolerated(0.07) benign(0.182) TCGA-D3-A8GI-06 3 51929070 51929070 G A IQCF1 Missense_Mutation p.R152C 0.47 tolerated(0.06) benign(0.13) TCGA-D3-A8GI-06 3 52266037 52266037 G A TWF2 Silent p.L69L 0.48 TCGA-D3-A8GI-06 3 52266038 52266038 G A TWF2 Silent p.Y68Y 0.46 TCGA-D3-A8GI-06 3 52391945 52391945 G A DNAH1 Missense_Mutation p.E1338K 0.26 possibly_damaging(0.734) TCGA-D3-A8GI-06 3 52474829 52474829 G A SEMA3G Silent p.F313F 0.39 TCGA-D3-A8GI-06 3 52474992 52474992 C T SEMA3G Missense_Mutation p.V296M 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 3 52518529 52518529 G A NISCH Missense_Mutation p.G510E 0.48 tolerated(0.86) benign(0.057) TCGA-D3-A8GI-06 3 52540843 52540843 G A STAB1 Missense_Mutation p.E656K 0.55 tolerated(0.28) benign(0.063) TCGA-D3-A8GI-06 3 52558714 52558714 G A NT5DC2 Silent p.F482F 0.41 TCGA-D3-A8GI-06 3 52559056 52559056 G A NT5DC2 Missense_Mutation p.R424C 0.47 deleterious(0.04) possibly_damaging(0.873) TCGA-D3-A8GI-06 3 52620542 52620542 G A PBRM1 Missense_Mutation p.R1071C 0.43 deleterious(0) possibly_damaging(0.835) TCGA-D3-A8GI-06 3 52864429 52864429 G A ITIH4 Intron 0.64 TCGA-D3-A8GI-06 3 53700370 53700370 C T CACNA1D Silent p.I308I 0.39 TCGA-D3-A8GI-06 3 54615854 54615854 G A CACNA2D3 Missense_Mutation p.E305K 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 3 54905585 54905585 G A CACNA2D3 Missense_Mutation p.R549Q 0.37 tolerated(0.2) probably_damaging(0.997) TCGA-D3-A8GI-06 3 54930782 54930782 C T CACNA2D3 Silent p.F751F 0.40 TCGA-D3-A8GI-06 3 54952869 54952869 T A LRTM1 Nonsense_Mutation p.K219* 0.41 TCGA-D3-A8GI-06 3 54958812 54958812 C T LRTM1 Silent p.E146E 0.42 TCGA-D3-A8GI-06 3 55002520 55002520 C T CACNA2D3 Silent p.F831F 0.38 TCGA-D3-A8GI-06 3 55504402 55504402 G A WNT5A Silent p.V287V 0.40 TCGA-D3-A8GI-06 3 56044547 56044547 G A ERC2 Missense_Mutation p.S617F 0.45 tolerated(0.18) benign(0.014) TCGA-D3-A8GI-06 3 56052994 56052994 C T ERC2 Silent p.V569V 0.52 TCGA-D3-A8GI-06 3 56114979 56114979 C T ERC2 Missense_Mutation p.E503K 0.48 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GI-06 3 56330314 56330314 C T ERC2 Silent p.E269E 0.46 TCGA-D3-A8GI-06 3 56597930 56597930 C T CCDC66 Silent p.I107I 0.32 TCGA-D3-A8GI-06 3 56779291 56779291 C T ARHGEF3 Missense_Mutation p.R303Q 0.41 deleterious(0) possibly_damaging(0.51) TCGA-D3-A8GI-06 3 57131657 57131657 G A IL17RD Silent p.L692L 0.40 TCGA-D3-A8GI-06 3 58141695 58141695 G A FLNB Missense_Mutation p.E2292K 0.27 tolerated(0.22) benign(0.383) TCGA-D3-A8GI-06 3 58183694 58183694 G A DNASE1L3 Silent p.F186F 0.46 TCGA-D3-A8GI-06 3 58484371 58484371 G A KCTD6 5'UTR 0.32 TCGA-D3-A8GI-06 3 62142750 62142750 C T PTPRG Missense_Mutation p.T231I 0.44 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 3 62499380 62499380 C G CADPS Intron 0.40 TCGA-D3-A8GI-06 3 62518605 62518605 G A CADPS Silent p.I744I 0.49 TCGA-D3-A8GI-06 3 63968674 63968674 T G ATXN7 Missense_Mutation p.C358G 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 64627670 64627670 C T ADAMTS9 Splice_Site p.X571_splice 0.44 TCGA-D3-A8GI-06 3 64666941 64666941 G A ADAMTS9 Silent p.I205I 0.55 TCGA-D3-A8GI-06 3 65372880 65372880 G A MAGI1 Intron 0.30 TCGA-D3-A8GI-06 3 65455999 65455999 C T MAGI1 Nonsense_Mutation p.W306* 0.49 TCGA-D3-A8GI-06 3 66436452 66436452 T C LRIG1 Missense_Mutation p.N581S 0.46 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A8GI-06 3 67058676 67058676 T C KBTBD8 Missense_Mutation p.L558P 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A8GI-06 3 68802070 68802070 G A FAM19A4 Missense_Mutation p.S77F 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 69097704 69097704 G A TMF1 Missense_Mutation p.S51F 0.40 tolerated_low_confidence(0.29) benign(0.002) TCGA-D3-A8GI-06 3 69168055 69168055 G A LMOD3 Missense_Mutation p.S484F 0.45 deleterious(0.02) possibly_damaging(0.498) TCGA-D3-A8GI-06 3 71247142 71247142 C T FOXP1 Silent p.L86L 0.43 TCGA-D3-A8GI-06 3 71591128 71591128 C T MIR1284 RNA 0.51 TCGA-D3-A8GI-06 3 7188344 7188344 C T GRM7 Missense_Mutation p.S242F 0.32 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GI-06 3 73433274 73433274 G A PDZRN3 Missense_Mutation p.P815S 0.44 tolerated(0.31) benign(0) TCGA-D3-A8GI-06 3 7456772 7456772 G A GRM7 Missense_Mutation p.E366K 0.41 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 3 7494352 7494352 G A GRM7 Silent p.V411V 0.29 TCGA-D3-A8GI-06 3 75986737 75986737 G A ROBO2 Silent p.G31G 0.17 TCGA-D3-A8GI-06 3 7620310 7620310 C T GRM7 Nonsense_Mutation p.R573* 0.43 TCGA-D3-A8GI-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.45 deleterious(0) possibly_damaging(0.85) TCGA-D3-A8GI-06 3 7721834 7721834 C T GRM7 Silent p.F850F 0.35 TCGA-D3-A8GI-06 3 77666970 77666970 G A ROBO2 Intron 0.28 TCGA-D3-A8GI-06 3 77684177 77684177 G A ROBO2 Missense_Mutation p.R1322K 0.50 deleterious(0.04) benign(0.021) TCGA-D3-A8GI-06 3 77684182 77684182 G A ROBO2 Missense_Mutation p.G1324R 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.86) TCGA-D3-A8GI-06 3 78719258 78719258 G A ROBO1 Silent p.I512I 0.22 TCGA-D3-A8GI-06 3 8543560 8543560 C T LMCD1 5'UTR 0.31 TCGA-D3-A8GI-06 3 85851261 85851261 G A CADM2 Silent p.L44L 0.36 TCGA-D3-A8GI-06 3 88040683 88040683 C T HTR1F Missense_Mutation p.H262Y 0.41 tolerated(0.36) benign(0.384) TCGA-D3-A8GI-06 3 88040710 88040710 G A HTR1F Missense_Mutation p.E271K 0.37 tolerated(0.42) possibly_damaging(0.792) TCGA-D3-A8GI-06 3 89390968 89390968 G A EPHA3 Nonsense_Mutation p.W345* 0.44 TCGA-D3-A8GI-06 3 9034592 9034592 G A SRGAP3 Silent p.G852G 0.35 TCGA-D3-A8GI-06 3 9094741 9094741 G A SRGAP3 Silent p.N431N 0.36 TCGA-D3-A8GI-06 3 96706189 96706189 G A EPHA6 Missense_Mutation p.E156K 0.42 tolerated(0.3) probably_damaging(0.997) TCGA-D3-A8GI-06 3 96706450 96706450 G A EPHA6 Missense_Mutation p.D243N 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 3 97167412 97167412 G A EPHA6 Missense_Mutation p.E578K 0.42 tolerated(0.15) possibly_damaging(0.858) TCGA-D3-A8GI-06 3 97251244 97251244 G A EPHA6 Missense_Mutation p.G748E 0.34 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 3 97311555 97311555 G A EPHA6 Missense_Mutation p.G829E 0.39 tolerated_low_confidence(0.14) benign(0.319) TCGA-D3-A8GI-06 3 9784841 9784841 C T BRPF1 Missense_Mutation p.R739W 0.42 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GI-06 3 97868549 97868549 G A OR5H14 Missense_Mutation p.S107N 0.41 deleterious(0.03) benign(0.005) TCGA-D3-A8GI-06 3 97868775 97868775 C G OR5H14 Missense_Mutation p.I182M 0.32 tolerated(0.24) benign(0.06) TCGA-D3-A8GI-06 3 97887714 97887714 C T OR5H15 Silent p.I57I 0.39 TCGA-D3-A8GI-06 3 97887883 97887883 C T OR5H15 Missense_Mutation p.L114F 0.37 deleterious(0) possibly_damaging(0.816) TCGA-D3-A8GI-06 3 97888227 97888227 G A OR5H15 Silent p.K228K 0.43 TCGA-D3-A8GI-06 3 97983880 97983880 G A OR5H6 Missense_Mutation p.R251Q 0.39 tolerated(0.22) benign(0.06) TCGA-D3-A8GI-06 3 98073386 98073386 C T OR5K4 Missense_Mutation p.S230F 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GI-06 3 98188459 98188459 C T OR5K1 Silent p.I13I 0.38 TCGA-D3-A8GI-06 3 9841954 9841954 G C ARPC4 Missense_Mutation p.V89L 0.38 tolerated(0.15) benign(0.011) TCGA-D3-A8GI-06 3 99513220 99513220 A T COL8A1 Nonsense_Mutation p.K159* 0.39 TCGA-D3-A8GI-06 3 99513387 99513387 G A COL8A1 Silent p.G214G 0.53 TCGA-D3-A8GI-06 3 9991781 9991781 C A PRRT3 Missense_Mutation p.G7C 0.50 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-D3-A8GI-06 3 9991782 9991782 C A PRRT3 Missense_Mutation p.W6C 0.50 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-D3-A8GI-06 4 100134784 100134784 C T ADH6 Missense_Mutation p.G81R 0.52 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GI-06 4 100203507 100203507 G A ADH1A Missense_Mutation p.T275I 0.32 tolerated(0.1) probably_damaging(0.982) TCGA-D3-A8GI-06 4 100203557 100203557 C T ADH1A Missense_Mutation p.M258I 0.23 deleterious(0.03) benign(0.037) TCGA-D3-A8GI-06 4 100208729 100208729 G A ADH1A Missense_Mutation p.R38C 0.36 deleterious(0.04) benign(0.377) TCGA-D3-A8GI-06 4 100235236 100235236 G A ADH1B Silent p.V190V 0.28 TCGA-D3-A8GI-06 4 100240015 100240015 C T ADH1B Nonsense_Mutation p.W16* 0.47 TCGA-D3-A8GI-06 4 100349121 100349121 C T ADH7 Missense_Mutation p.D145N 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GI-06 4 100512481 100512481 G A MTTP Silent p.A197A 0.31 TCGA-D3-A8GI-06 4 100529942 100529942 G A MTTP Missense_Mutation p.R526K 0.37 deleterious(0.03) probably_damaging(0.932) TCGA-D3-A8GI-06 4 100542309 100542309 G A MTTP Missense_Mutation p.E812K 0.53 deleterious(0.04) benign(0.15) TCGA-D3-A8GI-06 4 101108859 101108859 C T DDIT4L Missense_Mutation p.G186E 0.20 tolerated(0.07) benign(0.024) TCGA-D3-A8GI-06 4 102783785 102783785 C T BANK1 Missense_Mutation p.L243F 0.52 tolerated(0.76) possibly_damaging(0.748) TCGA-D3-A8GI-06 4 102981378 102981378 G A BANK1 Silent p.R660R 0.09 TCGA-D3-A8GI-06 4 104080019 104080019 G A CENPE Nonsense_Mutation p.Q876* 0.30 TCGA-D3-A8GI-06 4 106157370 106157370 C T TET2 Silent p.L757L 0.29 TCGA-D3-A8GI-06 4 106158730 106158730 T A TET2 Intron 0.29 TCGA-D3-A8GI-06 4 107168390 107168390 T C TBCK Silent p.L279L 0.47 TCGA-D3-A8GI-06 4 109810405 109810405 G A COL25A1 Missense_Mutation p.P316L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 110446596 110446596 C T SEC24B Silent p.D909D 0.46 TCGA-D3-A8GI-06 4 110603834 110603834 A C CCDC109B Missense_Mutation p.K183T 0.49 tolerated(0.09) benign(0.374) TCGA-D3-A8GI-06 4 110663733 110663733 G A CFI Missense_Mutation p.S483L 0.23 tolerated(0.7) benign(0.012) TCGA-D3-A8GI-06 4 110667517 110667517 G A CFI Silent p.I430I 0.19 TCGA-D3-A8GI-06 4 111441409 111441409 G A ENPEP Nonsense_Mutation p.W538* 0.35 TCGA-D3-A8GI-06 4 113333108 113333108 C T ALPK1 Silent p.L134L 0.56 TCGA-D3-A8GI-06 4 11400878 11400878 G A HS3ST1 Missense_Mutation p.T251I 0.60 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 4 114275241 114275241 C T ANK2 Missense_Mutation p.P1823S 0.26 benign(0.031) TCGA-D3-A8GI-06 4 114823312 114823312 G A ARSJ 3'UTR 0.21 TCGA-D3-A8GI-06 4 114824339 114824339 A T ARSJ Silent p.L297L 0.27 TCGA-D3-A8GI-06 4 115749046 115749046 G A NDST4 Silent p.L849L 0.27 TCGA-D3-A8GI-06 4 115891730 115891730 C T NDST4 Silent p.E359E 0.43 TCGA-D3-A8GI-06 4 115997700 115997700 G A NDST4 Missense_Mutation p.H165Y 0.19 tolerated(0.34) probably_damaging(0.954) TCGA-D3-A8GI-06 4 119256804 119256804 C T PRSS12 Missense_Mutation p.G215E 0.49 tolerated(0.88) benign(0.002) TCGA-D3-A8GI-06 4 119953090 119953090 C T SYNPO2 Missense_Mutation p.P1054S 0.62 tolerated(0.25) benign(0.202) TCGA-D3-A8GI-06 4 120243305 120243305 C T FABP2 5'UTR 0.31 TCGA-D3-A8GI-06 4 121742357 121742357 A C PRDM5 Missense_Mutation p.N148K 0.55 tolerated(0.56) benign(0.021) TCGA-D3-A8GI-06 4 121957365 121957365 G A NDNF 3'UTR 0.32 TCGA-D3-A8GI-06 4 121957833 121957833 C T NDNF Silent p.L431L 0.56 TCGA-D3-A8GI-06 4 121958778 121958778 C T NDNF Silent p.Q116Q 0.19 TCGA-D3-A8GI-06 4 122604530 122604530 G C ANXA5 Missense_Mutation p.H98D 0.29 tolerated(0.99) benign(0.016) TCGA-D3-A8GI-06 4 122833229 122833229 C T TRPC3 Missense_Mutation p.S454N 0.17 deleterious(0.04) benign(0.21) TCGA-D3-A8GI-06 4 123095738 123095738 C T KIAA1109 Missense_Mutation p.S75F 0.28 probably_damaging(0.959) TCGA-D3-A8GI-06 4 123161423 123161423 C T KIAA1109 Missense_Mutation p.S1529L 0.49 probably_damaging(0.996) TCGA-D3-A8GI-06 4 124235250 124235250 C T SPATA5 3'UTR 0.46 TCGA-D3-A8GI-06 4 126239887 126239887 C T FAT4 Missense_Mutation p.P774L 0.20 benign(0.102) TCGA-D3-A8GI-06 4 126336254 126336254 G A FAT4 Missense_Mutation p.D2046N 0.32 probably_damaging(0.999) TCGA-D3-A8GI-06 4 126336296 126336296 C T FAT4 Missense_Mutation p.P2060S 0.48 possibly_damaging(0.507) TCGA-D3-A8GI-06 4 126370109 126370109 C T FAT4 Silent p.F2646F 0.62 TCGA-D3-A8GI-06 4 126370221 126370221 C A FAT4 Missense_Mutation p.P2684T 0.53 possibly_damaging(0.852) TCGA-D3-A8GI-06 4 126371652 126371652 G A FAT4 Missense_Mutation p.E3161K 0.43 possibly_damaging(0.616) TCGA-D3-A8GI-06 4 126372516 126372516 G A FAT4 Missense_Mutation p.E3449K 0.18 benign(0.393) TCGA-D3-A8GI-06 4 126373180 126373180 C T FAT4 Missense_Mutation p.S3670F 0.23 possibly_damaging(0.534) TCGA-D3-A8GI-06 4 126398345 126398345 G A FAT4 Missense_Mutation p.G4110E 0.62 probably_damaging(1) TCGA-D3-A8GI-06 4 126411269 126411269 C T FAT4 Missense_Mutation p.A4431V 0.31 benign(0.01) TCGA-D3-A8GI-06 4 126411471 126411471 C T FAT4 Silent p.I4498I 0.31 TCGA-D3-A8GI-06 4 126412222 126412222 C T FAT4 Silent p.L4749L 0.47 TCGA-D3-A8GI-06 4 126412779 126412779 G A FAT4 Silent p.L4934L 0.46 TCGA-D3-A8GI-06 4 128595355 128595355 C T INTU Silent p.L390L 0.43 TCGA-D3-A8GI-06 4 128689998 128689998 C T SLC25A31 Missense_Mutation p.P242L 0.60 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 4 129770168 129770168 C T JADE1 Silent p.I110I 0.26 TCGA-D3-A8GI-06 4 129873945 129873945 T C SCLT1 Silent p.E399E 0.57 TCGA-D3-A8GI-06 4 130003479 130003479 G A SCLT1 Silent p.S28S 0.23 TCGA-D3-A8GI-06 4 134073906 134073906 G A PCDH10 Missense_Mutation p.G871R 0.60 tolerated(0.35) possibly_damaging(0.885) TCGA-D3-A8GI-06 4 13543869 13543869 C T NKX3-2 Silent p.V250V 0.33 TCGA-D3-A8GI-06 4 138449737 138449737 C T PCDH18 Missense_Mutation p.E879K 0.57 deleterious(0.03) benign(0.081) TCGA-D3-A8GI-06 4 138451591 138451591 C T PCDH18 Missense_Mutation p.G551E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 139093058 139093058 C A SLC7A11 3'UTR 0.43 TCGA-D3-A8GI-06 4 139153512 139153512 G A SLC7A11 Silent p.S143S 0.55 TCGA-D3-A8GI-06 4 140375334 140375334 G A RAB33B 5'UTR 0.38 TCGA-D3-A8GI-06 4 140375335 140375335 G A RAB33B 5'UTR 0.35 TCGA-D3-A8GI-06 4 140641098 140641098 C T MAML3 Missense_Mutation p.M932I 0.56 benign(0.003) TCGA-D3-A8GI-06 4 140810603 140810603 G A MAML3 Silent p.L663L 0.41 TCGA-D3-A8GI-06 4 141331016 141331016 C T CLGN Missense_Mutation p.M84I 0.42 tolerated(0.76) benign(0) TCGA-D3-A8GI-06 4 142143521 142143521 G A ZNF330 Intron 0.25 TCGA-D3-A8GI-06 4 144940441 144940441 C T GYPB 5'UTR 0.51 TCGA-D3-A8GI-06 4 145629453 145629453 G A HHIP Missense_Mutation p.D431N 0.20 tolerated(1) benign(0.003) TCGA-D3-A8GI-06 4 146031258 146031258 C T ABCE1 Missense_Mutation p.P137S 0.47 deleterious(0.02) possibly_damaging(0.856) TCGA-D3-A8GI-06 4 146461073 146461073 C T SMAD1 Missense_Mutation p.P173L 0.30 deleterious(0.01) possibly_damaging(0.532) TCGA-D3-A8GI-06 4 146617761 146617761 C T C4orf51 Missense_Mutation p.T95I 0.24 deleterious(0.04) benign(0.031) TCGA-D3-A8GI-06 4 147204407 147204407 C T SLC10A7 Missense_Mutation p.G262S 0.21 tolerated(0.55) benign(0.031) TCGA-D3-A8GI-06 4 148461579 148461579 C T EDNRA Missense_Mutation p.S362L 0.35 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 4 149115907 149115907 C T NR3C2 Missense_Mutation p.M668I 0.56 deleterious(0) benign(0.072) TCGA-D3-A8GI-06 4 149356546 149356546 G A NR3C2 Silent p.F489F 0.13 TCGA-D3-A8GI-06 4 149357624 149357624 G A NR3C2 Missense_Mutation p.P130L 0.23 deleterious_low_confidence(0) benign(0.158) TCGA-D3-A8GI-06 4 149357784 149357784 C T NR3C2 Missense_Mutation p.D77N 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.811) TCGA-D3-A8GI-06 4 151168770 151168770 G A DCLK2 Silent p.Q615Q 0.31 TCGA-D3-A8GI-06 4 151356783 151356783 G A LRBA Silent p.S2344S 0.52 TCGA-D3-A8GI-06 4 151727507 151727507 G T LRBA Missense_Mutation p.R1812S 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GI-06 4 153251889 153251889 G A FBXW7 Missense_Mutation p.P373S 0.27 tolerated(0.21) benign(0.072) TCGA-D3-A8GI-06 4 153897637 153897637 C T FHDC1 Missense_Mutation p.S1065L 0.22 deleterious(0.05) probably_damaging(1) TCGA-D3-A8GI-06 4 155191113 155191113 G A DCHS2 Silent p.S1717S 0.45 TCGA-D3-A8GI-06 4 155219480 155219480 C T DCHS2 Missense_Mutation p.D1541N 0.32 deleterious(0.02) possibly_damaging(0.895) TCGA-D3-A8GI-06 4 155241724 155241724 C T DCHS2 Silent p.V1154V 0.24 TCGA-D3-A8GI-06 4 155243593 155243593 T C DCHS2 Missense_Mutation p.R901G 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GI-06 4 155490877 155490877 G A FGB Silent p.L390L 0.30 TCGA-D3-A8GI-06 4 155506674 155506674 G A FGA Intron 0.44 TCGA-D3-A8GI-06 4 155507004 155507004 C T FGA Missense_Mutation p.G526E 0.23 tolerated(0.14) possibly_damaging(0.63) TCGA-D3-A8GI-06 4 155531223 155531223 C T FGG Silent p.G176G 0.50 TCGA-D3-A8GI-06 4 156135134 156135134 G A NPY2R Missense_Mutation p.E15K 0.30 deleterious_low_confidence(0.02) benign(0.003) TCGA-D3-A8GI-06 4 156135308 156135308 C T NPY2R Missense_Mutation p.H73Y 0.53 tolerated(1) benign(0.004) TCGA-D3-A8GI-06 4 156135355 156135355 C T NPY2R Silent p.F88F 0.50 TCGA-D3-A8GI-06 4 156135449 156135449 C T NPY2R Missense_Mutation p.P120S 0.41 tolerated(0.81) benign(0.001) TCGA-D3-A8GI-06 4 156136322 156136322 T A NPY2R 3'UTR 0.54 TCGA-D3-A8GI-06 4 156618031 156618031 G A GUCY1A3 Silent p.T4T 0.28 TCGA-D3-A8GI-06 4 156631822 156631822 C T GUCY1A3 Missense_Mutation p.L169F 0.48 deleterious(0.01) benign(0.169) TCGA-D3-A8GI-06 4 156634523 156634523 C T GUCY1A3 Silent p.L454L 0.62 TCGA-D3-A8GI-06 4 156634538 156634538 C T GUCY1A3 Missense_Mutation p.P459S 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 156753048 156753048 C T ASIC5 Missense_Mutation p.E419K 0.54 deleterious(0.03) benign(0.026) TCGA-D3-A8GI-06 4 156832736 156832736 G A TDO2 Missense_Mutation p.E236K 0.51 tolerated(0.22) benign(0.03) TCGA-D3-A8GI-06 4 158257582 158257582 G A GRIA2 Silent p.V509V 0.30 TCGA-D3-A8GI-06 4 158262603 158262603 G A GRIA2 Missense_Mutation p.E678K 0.23 deleterious(0.01) probably_damaging(0.912) TCGA-D3-A8GI-06 4 159092314 159092314 G A FAM198B Missense_Mutation p.R72C 0.34 deleterious(0.03) benign(0.108) TCGA-D3-A8GI-06 4 159538355 159538355 G A RXFP1 Nonsense_Mutation p.W251* 0.20 TCGA-D3-A8GI-06 4 159568063 159568063 G A RXFP1 Missense_Mutation p.G489E 0.30 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 4 159569688 159569688 C T RXFP1 Silent p.S598S 0.37 TCGA-D3-A8GI-06 4 159634398 159634398 G A PPID Missense_Mutation p.S256L 0.73 tolerated(0.7) benign(0.337) TCGA-D3-A8GI-06 4 159636744 159636744 G A PPID Silent p.F205F 0.34 TCGA-D3-A8GI-06 4 159790005 159790005 G A FNIP2 Silent p.E739E 0.39 TCGA-D3-A8GI-06 4 162463785 162463785 C T FSTL5 Missense_Mutation p.S359N 0.14 deleterious(0.03) probably_damaging(0.968) TCGA-D3-A8GI-06 4 162680589 162680589 G A FSTL5 Missense_Mutation p.A234V 0.36 deleterious(0.03) possibly_damaging(0.858) TCGA-D3-A8GI-06 4 162680671 162680671 C T FSTL5 Missense_Mutation p.E207K 0.18 deleterious(0.03) benign(0.03) TCGA-D3-A8GI-06 4 162697134 162697134 G A FSTL5 Missense_Mutation p.P168S 0.15 tolerated(0.78) benign(0.001) TCGA-D3-A8GI-06 4 162841769 162841769 C T FSTL5 Missense_Mutation p.E66K 0.19 tolerated(0.68) probably_damaging(0.952) TCGA-D3-A8GI-06 4 164393187 164393187 T C TKTL2 Missense_Mutation p.Y567C 0.17 deleterious(0.05) possibly_damaging(0.458) TCGA-D3-A8GI-06 4 164393449 164393449 C T TKTL2 Missense_Mutation p.E480K 0.29 tolerated(0.4) benign(0.117) TCGA-D3-A8GI-06 4 164393960 164393960 G A TKTL2 Silent p.S309S 0.12 TCGA-D3-A8GI-06 4 164394630 164394630 G A TKTL2 Missense_Mutation p.A86V 0.35 tolerated(0.44) benign(0.052) TCGA-D3-A8GI-06 4 164534615 164534615 C T MARCH1 Intron 0.48 TCGA-D3-A8GI-06 4 165961359 165961359 G A TRIM60 Silent p.K45K 0.22 TCGA-D3-A8GI-06 4 165961680 165961680 G A TRIM60 Silent p.R152R 0.13 TCGA-D3-A8GI-06 4 166150001 166150001 G A KLHL2 Missense_Mutation p.M69I 0.17 tolerated(0.33) benign(0) TCGA-D3-A8GI-06 4 166915594 166915594 G A TLL1 Silent p.E141E 0.48 TCGA-D3-A8GI-06 4 167020680 167020680 G A TLL1 Splice_Site p.X969_splice 0.19 TCGA-D3-A8GI-06 4 167021900 167021900 G A TLL1 Missense_Mutation p.E972K 0.62 tolerated(0.1) possibly_damaging(0.904) TCGA-D3-A8GI-06 4 167021918 167021918 G A TLL1 Missense_Mutation p.G978R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 4 167655859 167655859 T A SPOCK3 3'UTR 0.43 TCGA-D3-A8GI-06 4 167656143 167656143 C T SPOCK3 Missense_Mutation p.E414K 0.17 tolerated_low_confidence(0.2) unknown(0) TCGA-D3-A8GI-06 4 167810380 167810380 G A SPOCK3 Nonsense_Mutation p.Q167* 0.34 TCGA-D3-A8GI-06 4 167983660 167983660 C T SPOCK3 Missense_Mutation p.G76E 0.69 tolerated(0.61) benign(0.272) TCGA-D3-A8GI-06 4 169212936 169212936 G A DDX60 Missense_Mutation p.S335F 0.15 tolerated(0.1) possibly_damaging(0.655) TCGA-D3-A8GI-06 4 169327175 169327175 A G DDX60L Silent p.L1047L 0.67 TCGA-D3-A8GI-06 4 169354260 169354260 G A DDX60L Missense_Mutation p.S434F 0.13 tolerated(0.08) benign(0.046) TCGA-D3-A8GI-06 4 169837077 169837077 G A PALLD Missense_Mutation p.E917K 0.66 deleterious(0.01) probably_damaging(0.941) TCGA-D3-A8GI-06 4 170983133 170983133 G A AADAT Silent p.L382L 0.69 TCGA-D3-A8GI-06 4 170994361 170994361 G A AADAT Missense_Mutation p.L194F 0.28 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 4 173961263 173961263 G A GALNTL6 3'UTR 0.31 TCGA-D3-A8GI-06 4 17516987 17516987 G A CLRN2 Nonsense_Mutation p.W33* 0.09 TCGA-D3-A8GI-06 4 175604077 175604077 C T GLRA3 Missense_Mutation p.M196I 0.18 tolerated(0.05) possibly_damaging(0.903) TCGA-D3-A8GI-06 4 175898399 175898399 C T ADAM29 Missense_Mutation p.R575C 0.72 deleterious(0.03) probably_damaging(0.935) TCGA-D3-A8GI-06 4 175898525 175898525 C T ADAM29 Missense_Mutation p.H617Y 0.36 tolerated(0.11) benign(0.327) TCGA-D3-A8GI-06 4 177098252 177098252 G A WDR17 Missense_Mutation p.E1204K 0.25 tolerated(0.2) probably_damaging(0.993) TCGA-D3-A8GI-06 4 177143476 177143476 T C ASB5 Silent p.E124E 0.65 TCGA-D3-A8GI-06 4 177190192 177190192 G A ASB5 Missense_Mutation p.S23L 0.39 deleterious_low_confidence(0) benign(0.104) TCGA-D3-A8GI-06 4 17805433 17805433 G A DCAF16 Missense_Mutation p.P111L 0.34 tolerated_low_confidence(0.16) probably_damaging(0.958) TCGA-D3-A8GI-06 4 178283691 178283691 C T NEIL3 3'UTR 0.26 TCGA-D3-A8GI-06 4 17887735 17887735 T C LCORL Silent p.E244E 0.56 TCGA-D3-A8GI-06 4 183594242 183594242 C T TENM3 Missense_Mutation p.P399L 0.25 deleterious(0) possibly_damaging(0.713) TCGA-D3-A8GI-06 4 183594244 183594244 C T TENM3 Missense_Mutation p.P400S 0.24 deleterious(0) possibly_damaging(0.641) TCGA-D3-A8GI-06 4 183600827 183600827 C T TENM3 Silent p.F445F 0.78 TCGA-D3-A8GI-06 4 183603162 183603162 C T TENM3 Missense_Mutation p.S677L 0.72 deleterious(0) possibly_damaging(0.587) TCGA-D3-A8GI-06 4 183673041 183673041 C T TENM3 Missense_Mutation p.R1240C 0.45 deleterious(0) benign(0.095) TCGA-D3-A8GI-06 4 183674704 183674704 G A TENM3 Missense_Mutation p.D1322N 0.43 tolerated(0.08) benign(0.033) TCGA-D3-A8GI-06 4 183694797 183694797 C T TENM3 Nonsense_Mutation p.Q1689* 0.21 TCGA-D3-A8GI-06 4 183714263 183714263 G A TENM3 Silent p.K2146K 0.18 TCGA-D3-A8GI-06 4 183714456 183714456 G A TENM3 Missense_Mutation p.G2211R 0.12 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GI-06 4 184192380 184192380 G A WWC2 Missense_Mutation p.D850N 0.36 tolerated(0.3) benign(0.097) TCGA-D3-A8GI-06 4 184241004 184241004 C T CLDN22 Missense_Mutation p.G123E 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 1843298 1843298 G A LETM1 Missense_Mutation p.L124F 0.28 deleterious(0.02) probably_damaging(0.934) TCGA-D3-A8GI-06 4 184432116 184432116 C T ING2 3'UTR 0.60 TCGA-D3-A8GI-06 4 184922542 184922542 C T STOX2 Silent p.I77I 0.33 TCGA-D3-A8GI-06 4 184930627 184930627 C T STOX2 Silent p.P212P 0.33 TCGA-D3-A8GI-06 4 184930879 184930879 C T STOX2 Silent p.P296P 0.27 TCGA-D3-A8GI-06 4 184931175 184931175 G A STOX2 Missense_Mutation p.R395K 0.36 tolerated(0.1) benign(0.222) TCGA-D3-A8GI-06 4 186380143 186380143 G A CCDC110 Missense_Mutation p.S533F 0.23 tolerated(0.65) benign(0.093) TCGA-D3-A8GI-06 4 187539951 187539951 G A FAT1 Nonsense_Mutation p.R2597* 0.43 TCGA-D3-A8GI-06 4 188924669 188924669 C T ZFP42 Silent p.F236F 0.26 TCGA-D3-A8GI-06 4 189012482 189012482 C T TRIML2 3'UTR 0.39 TCGA-D3-A8GI-06 4 189026058 189026058 G A TRIML2 Missense_Mutation p.S23L 0.65 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 4 189060979 189060979 G A TRIML1 Silent p.E89E 0.19 TCGA-D3-A8GI-06 4 189063450 189063450 G A TRIML1 Missense_Mutation p.M183I 0.15 tolerated(0.14) benign(0.002) TCGA-D3-A8GI-06 4 190876280 190876280 G A FRG1 Missense_Mutation p.E136K 0.04 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 1920203 1920203 T C WHSC1 Silent p.S421S 0.59 TCGA-D3-A8GI-06 4 20490519 20490519 T C SLIT2 Missense_Mutation p.V230A 0.53 deleterious(0.05) benign(0.159) TCGA-D3-A8GI-06 4 20525637 20525637 G A SLIT2 Missense_Mutation p.M425I 0.18 deleterious(0.02) benign(0.001) TCGA-D3-A8GI-06 4 20555550 20555550 A T SLIT2 Missense_Mutation p.K895I 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 20597365 20597365 T C SLIT2 Silent p.D1076D 0.28 TCGA-D3-A8GI-06 4 20618795 20618795 G A SLIT2 Silent p.R1370R 0.11 TCGA-D3-A8GI-06 4 22749095 22749095 G A GBA3 Missense_Mutation p.D155N 0.57 tolerated(0.11) benign(0.048) TCGA-D3-A8GI-06 4 22749457 22749457 G A GBA3 Missense_Mutation p.M275I 0.62 deleterious(0.02) benign(0.042) TCGA-D3-A8GI-06 4 2306490 2306490 G A ZFYVE28 Missense_Mutation p.S526F 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.463) TCGA-D3-A8GI-06 4 23815993 23815993 C T PPARGC1A Silent p.R371R 0.54 TCGA-D3-A8GI-06 4 23830147 23830147 G A PPARGC1A Silent p.L211L 0.32 TCGA-D3-A8GI-06 4 24801218 24801218 G A SOD3 Silent p.A25A 0.50 TCGA-D3-A8GI-06 4 25675920 25675920 T C SLC34A2 Missense_Mutation p.F407L 0.61 tolerated(0.17) benign(0.246) TCGA-D3-A8GI-06 4 25806263 25806263 G A SEL1L3 Missense_Mutation p.P559L 0.53 deleterious(0.04) probably_damaging(0.988) TCGA-D3-A8GI-06 4 25834645 25834645 C T SEL1L3 Missense_Mutation p.R357Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 26487355 26487355 G A CCKAR Missense_Mutation p.P177L 0.52 tolerated(0.29) possibly_damaging(0.861) TCGA-D3-A8GI-06 4 2733767 2733767 C T FAM193A 3'UTR 0.71 TCGA-D3-A8GI-06 4 289226 289226 C T ZNF732 Splice_Site p.X76_splice 0.25 TCGA-D3-A8GI-06 4 289881 289881 G A ZNF732 Missense_Mutation p.P23S 0.60 tolerated(0.33) benign(0.003) TCGA-D3-A8GI-06 4 3419203 3419203 C T RGS12 Missense_Mutation p.S899L 0.39 deleterious(0.04) benign(0.01) TCGA-D3-A8GI-06 4 3495223 3495223 C T DOK7 Missense_Mutation p.P504S 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GI-06 4 36126538 36126538 G A ARAP2 Missense_Mutation p.S1231F 0.20 deleterious(0.01) benign(0.337) TCGA-D3-A8GI-06 4 36179531 36179531 C T ARAP2 Missense_Mutation p.G592E 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 367307 367307 C T ZNF141 Missense_Mutation p.H361Y 0.25 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A8GI-06 4 38016577 38016577 C T TBC1D1 Nonsense_Mutation p.R289* 0.44 TCGA-D3-A8GI-06 4 38776614 38776614 C T TLR10 Missense_Mutation p.D200N 0.56 tolerated(1) benign(0) TCGA-D3-A8GI-06 4 39000377 39000377 G A TMEM156 Missense_Mutation p.R81C 0.60 deleterious(0) possibly_damaging(0.523) TCGA-D3-A8GI-06 4 39436248 39436248 C T KLB Missense_Mutation p.A415V 0.48 tolerated(1) possibly_damaging(0.7) TCGA-D3-A8GI-06 4 3944359 3944359 G A FAM86EP RNA 0.46 TCGA-D3-A8GI-06 4 40099014 40099014 C T N4BP2 Silent p.N18N 0.51 TCGA-D3-A8GI-06 4 40115076 40115076 C T N4BP2 Missense_Mutation p.L538F 0.25 tolerated(0.06) benign(0.144) TCGA-D3-A8GI-06 4 40351057 40351057 C T CHRNA9 Missense_Mutation p.S175F 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 40351256 40351256 C T CHRNA9 Silent p.I241I 0.30 TCGA-D3-A8GI-06 4 40356111 40356111 G A CHRNA9 Silent p.R338R 0.28 TCGA-D3-A8GI-06 4 40356316 40356316 C T CHRNA9 Nonsense_Mutation p.Q407* 0.55 TCGA-D3-A8GI-06 4 40778148 40778148 C T NSUN7 Missense_Mutation p.S303L 0.48 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 4 40778266 40778266 A G NSUN7 Missense_Mutation p.I342M 0.22 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 4 40810425 40810425 G A NSUN7 Silent p.E542E 0.57 TCGA-D3-A8GI-06 4 41689867 41689867 C T LIMCH1 Nonsense_Mutation p.R983* 0.31 TCGA-D3-A8GI-06 4 41694373 41694373 C T LIMCH1 Silent p.N1066N 0.18 TCGA-D3-A8GI-06 4 41750674 41750674 G A PHOX2B 5'UTR 0.59 TCGA-D3-A8GI-06 4 42119631 42119631 G A BEND4 Silent p.F503F 0.19 TCGA-D3-A8GI-06 4 46060384 46060384 C T GABRG1 Missense_Mutation p.D256N 0.62 deleterious(0.05) benign(0.424) TCGA-D3-A8GI-06 4 46060518 46060518 G A GABRG1 Silent p.I249I 0.55 TCGA-D3-A8GI-06 4 46390832 46390832 C T GABRA2 Intron 0.19 TCGA-D3-A8GI-06 4 47647181 47647181 G A CORIN Missense_Mutation p.P625L 0.54 tolerated(0.06) possibly_damaging(0.831) TCGA-D3-A8GI-06 4 47901055 47901055 G A NFXL1 Silent p.A303A 0.32 TCGA-D3-A8GI-06 4 47939754 47939754 G A CNGA1 Silent p.L322L 0.17 TCGA-D3-A8GI-06 4 48622757 48622757 G A FRYL Silent p.L71L 0.51 TCGA-D3-A8GI-06 4 49009325 49009325 G A CWH43 Missense_Mutation p.E390K 0.47 tolerated(0.57) benign(0.01) TCGA-D3-A8GI-06 4 49019290 49019290 G A CWH43 Missense_Mutation p.G404E 0.26 deleterious(0.02) possibly_damaging(0.899) TCGA-D3-A8GI-06 4 54325745 54325745 T A FIP1L1 3'UTR 0.18 TCGA-D3-A8GI-06 4 54347979 54347979 G A LNX1 Missense_Mutation p.R465W 0.24 deleterious(0.01) possibly_damaging(0.762) TCGA-D3-A8GI-06 4 55133820 55133820 C T PDGFRA Missense_Mutation p.P345S 0.54 deleterious(0.01) possibly_damaging(0.657) TCGA-D3-A8GI-06 4 55946121 55946121 G A KDR Missense_Mutation p.S1353F 0.53 deleterious_low_confidence(0.03) benign(0.333) TCGA-D3-A8GI-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 55961784 55961784 G A KDR Missense_Mutation p.T926I 0.61 deleterious(0.03) benign(0.259) TCGA-D3-A8GI-06 4 56225521 56225521 C A SRD5A3 Missense_Mutation p.S77Y 0.23 tolerated(1) benign(0.009) TCGA-D3-A8GI-06 4 56471487 56471487 G A NMU Silent p.L130L 0.26 TCGA-D3-A8GI-06 4 5692989 5692989 T C EVC2 Intron 0.54 TCGA-D3-A8GI-06 4 57355644 57355644 C T SRP72 Missense_Mutation p.H439Y 0.58 tolerated(0.48) benign(0.005) TCGA-D3-A8GI-06 4 62598771 62598771 G A LPHN3 Missense_Mutation p.D232N 0.52 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GI-06 4 62599156 62599156 C T LPHN3 Missense_Mutation p.S360L 0.73 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GI-06 4 6335450 6335450 C T PPP2R2C Missense_Mutation p.E267K 0.29 deleterious(0.02) possibly_damaging(0.776) TCGA-D3-A8GI-06 4 69334621 69334621 C T TMPRSS11E Missense_Mutation p.P95S 0.22 tolerated(0.65) benign(0.026) TCGA-D3-A8GI-06 4 69337209 69337209 C T TMPRSS11E Silent p.L120L 0.57 TCGA-D3-A8GI-06 4 69342095 69342095 C T TMPRSS11E Missense_Mutation p.R216C 0.45 deleterious(0.03) probably_damaging(0.972) TCGA-D3-A8GI-06 4 69431385 69431385 G A UGT2B17 Nonsense_Mutation p.R260* 0.45 TCGA-D3-A8GI-06 4 69512862 69512862 C T UGT2B15 Missense_Mutation p.R518Q 0.57 tolerated(0.7) benign(0.074) TCGA-D3-A8GI-06 4 69519941 69519941 C T UGT2B15 Missense_Mutation p.G376D 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 4 69535817 69535817 G A UGT2B15 Nonsense_Mutation p.R174* 0.28 TCGA-D3-A8GI-06 4 69681736 69681736 G A UGT2B10 5'UTR 0.46 TCGA-D3-A8GI-06 4 69687989 69687989 G A UGT2B10 Missense_Mutation p.E290K 0.25 deleterious(0.01) benign(0.096) TCGA-D3-A8GI-06 4 69795537 69795537 C T UGT2A3 Silent p.R526R 0.17 TCGA-D3-A8GI-06 4 69796941 69796941 C T UGT2A3 Missense_Mutation p.G339E 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 4 69962701 69962701 C T UGT2B7 Missense_Mutation p.P155S 0.46 deleterious(0.04) possibly_damaging(0.477) TCGA-D3-A8GI-06 4 69973929 69973929 C T UGT2B7 Missense_Mutation p.P400L 0.62 tolerated(0.13) benign(0.048) TCGA-D3-A8GI-06 4 69973931 69973931 G A UGT2B7 Missense_Mutation p.D401N 0.25 deleterious(0.04) benign(0.009) TCGA-D3-A8GI-06 4 69978209 69978209 C T UGT2B7 Nonsense_Mutation p.Q449* 0.30 TCGA-D3-A8GI-06 4 70080096 70080096 G A UGT2B11 Silent p.I115I 0.22 TCGA-D3-A8GI-06 4 70080218 70080218 C T UGT2B11 Missense_Mutation p.E75K 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 70146347 70146347 G A UGT2B28 Silent p.L43L 0.42 TCGA-D3-A8GI-06 4 70146855 70146855 A T UGT2B28 Missense_Mutation p.N213Y 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 70346309 70346309 G A UGT2B4 3'UTR 0.27 TCGA-D3-A8GI-06 4 70346374 70346374 C T UGT2B4 Missense_Mutation p.G522E 0.24 tolerated(0.15) benign(0.062) TCGA-D3-A8GI-06 4 70455136 70455136 G A UGT2A1 Missense_Mutation p.S679F 0.42 tolerated(0.06) benign(0.008) TCGA-D3-A8GI-06 4 70455229 70455229 G A UGT2A1 Missense_Mutation p.T648I 0.45 deleterious(0.01) benign(0.219) TCGA-D3-A8GI-06 4 70460340 70460340 G A UGT2A1 Missense_Mutation p.P553S 0.30 deleterious(0) possibly_damaging(0.89) TCGA-D3-A8GI-06 4 70513226 70513226 T G UGT2A1 Missense_Mutation p.K46T 0.30 deleterious(0) possibly_damaging(0.513) TCGA-D3-A8GI-06 4 71020105 71020105 C T C4orf40 Missense_Mutation p.L5F 0.48 deleterious(0.02) benign(0.01) TCGA-D3-A8GI-06 4 71021776 71021776 G A C4orf40 Silent p.R19R 0.51 TCGA-D3-A8GI-06 4 71099834 71099834 G A FDCSP Nonsense_Mutation p.W63* 0.57 TCGA-D3-A8GI-06 4 71201636 71201636 G A CABS1 Missense_Mutation p.G294R 0.32 tolerated(0.06) benign(0.057) TCGA-D3-A8GI-06 4 71232663 71232663 C T SMR3A Silent p.F119F 0.37 TCGA-D3-A8GI-06 4 71275748 71275748 G A PROL1 Missense_Mutation p.A235T 0.61 tolerated_low_confidence(1) unknown(0) TCGA-D3-A8GI-06 4 71467171 71467171 C T AMBN Missense_Mutation p.P111S 0.58 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 71508700 71508700 G A ENAM Silent p.G519G 0.32 TCGA-D3-A8GI-06 4 71628369 71628369 C T RUFY3 Silent p.F104F 0.54 TCGA-D3-A8GI-06 4 72631316 72631316 G A GC Silent p.F121F 0.48 TCGA-D3-A8GI-06 4 72649682 72649682 C T GC Silent p.E37E 0.16 TCGA-D3-A8GI-06 4 73184289 73184289 C T ADAMTS3 Silent p.A495A 0.63 TCGA-D3-A8GI-06 4 73414243 73414243 G A ADAMTS3 Silent p.I152I 0.49 TCGA-D3-A8GI-06 4 73923937 73923937 G A COX18 Missense_Mutation p.P299L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 4 74279140 74279140 G A ALB Missense_Mutation p.D283N 0.55 deleterious(0.03) benign(0.034) TCGA-D3-A8GI-06 4 74280867 74280867 G A ALB Missense_Mutation p.E392K 0.68 tolerated(0.71) benign(0.086) TCGA-D3-A8GI-06 4 74309129 74309129 G A AFP Missense_Mutation p.M227I 0.26 tolerated(0.19) benign(0.003) TCGA-D3-A8GI-06 4 74313347 74313347 G A AFP Missense_Mutation p.D338N 0.51 tolerated(0.29) benign(0.083) TCGA-D3-A8GI-06 4 7435608 7435608 C T PSAPL1 Silent p.T333T 0.60 TCGA-D3-A8GI-06 4 74364835 74364835 C T AFM Missense_Mutation p.L432F 0.22 tolerated(0.07) benign(0.269) TCGA-D3-A8GI-06 4 7436550 7436550 G A PSAPL1 Silent p.P19P 0.62 TCGA-D3-A8GI-06 4 74365757 74365757 G A AFM Missense_Mutation p.E487K 0.53 tolerated(0.46) benign(0.038) TCGA-D3-A8GI-06 4 74368812 74368812 G A AFM 3'UTR 0.27 TCGA-D3-A8GI-06 4 75177920 75177920 C T EPGN Missense_Mutation p.P51L 0.51 deleterious(0.03) benign(0.299) TCGA-D3-A8GI-06 4 75482005 75482005 G A AREGB Splice_Site p.X21_splice 0.32 TCGA-D3-A8GI-06 4 7677815 7677815 C T SORCS2 Silent p.F400F 0.50 TCGA-D3-A8GI-06 4 76794381 76794381 G A PPEF2 Missense_Mutation p.P469S 0.22 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 4 76805815 76805815 G A PPEF2 Silent p.F226F 0.22 TCGA-D3-A8GI-06 4 7705057 7705057 C T SORCS2 Silent p.I573I 0.27 TCGA-D3-A8GI-06 4 77091022 77091022 G A SCARB2 Missense_Mutation p.P371S 0.23 deleterious(0) probably_damaging(0.929) TCGA-D3-A8GI-06 4 77230686 77230686 G A FAM47E-STBD1 Missense_Mutation p.E204K 0.26 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 4 77288451 77288451 A C CCDC158 Missense_Mutation p.L609R 0.26 deleterious(0) benign(0.241) TCGA-D3-A8GI-06 4 77700114 77700114 G A SHROOM3 Silent p.V1925V 0.68 TCGA-D3-A8GI-06 4 7776570 7776570 G A AFAP1 Missense_Mutation p.T653I 0.45 tolerated(0.09) benign(0.017) TCGA-D3-A8GI-06 4 79353564 79353564 G A FRAS1 Missense_Mutation p.D1675N 0.25 benign(0.271) TCGA-D3-A8GI-06 4 79371464 79371464 G A FRAS1 Missense_Mutation p.R2145Q 0.68 benign(0.006) TCGA-D3-A8GI-06 4 80246365 80246365 C T NAA11 Missense_Mutation p.E223K 0.45 tolerated_low_confidence(0.12) benign(0.001) TCGA-D3-A8GI-06 4 8089990 8089990 G C ABLIM2 Missense_Mutation p.D120E 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 4 8089992 8089992 C T ABLIM2 Missense_Mutation p.D120N 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 80929759 80929759 G A ANTXR2 Silent p.I319I 0.74 TCGA-D3-A8GI-06 4 81791204 81791204 G A C4orf22 Missense_Mutation p.D148N 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 81967591 81967591 G A BMP3 Missense_Mutation p.R339K 0.55 tolerated(0.14) probably_damaging(0.997) TCGA-D3-A8GI-06 4 82026995 82026995 G A PRKG2 Missense_Mutation p.P679S 0.52 tolerated(0.11) possibly_damaging(0.462) TCGA-D3-A8GI-06 4 83840124 83840124 A T THAP9 3'UTR 0.60 TCGA-D3-A8GI-06 4 84361087 84361087 G A HELQ Silent p.S579S 0.48 TCGA-D3-A8GI-06 4 84502743 84502743 G A AGPAT9 Missense_Mutation p.M79I 0.61 tolerated(0.26) benign(0.214) TCGA-D3-A8GI-06 4 853478 853478 G A GAK Missense_Mutation p.P1067S 0.57 tolerated(0.33) benign(0.011) TCGA-D3-A8GI-06 4 8621281 8621281 C T CPZ Silent p.P632P 0.41 TCGA-D3-A8GI-06 4 86863251 86863251 C T ARHGAP24 Missense_Mutation p.R142C 0.48 deleterious(0.03) possibly_damaging(0.676) TCGA-D3-A8GI-06 4 87703357 87703357 C T PTPN13 Missense_Mutation p.S1994F 0.52 tolerated(0.73) benign(0.062) TCGA-D3-A8GI-06 4 88403663 88403663 C T SPARCL1 Missense_Mutation p.M527I 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GI-06 4 88534317 88534317 G A DSPP Missense_Mutation p.E327K 0.38 probably_damaging(0.993) TCGA-D3-A8GI-06 4 88577671 88577671 C T DMP1 Silent p.F9F 0.19 TCGA-D3-A8GI-06 4 89311910 89311910 C T HERC6 Silent p.I181I 0.57 TCGA-D3-A8GI-06 4 89393603 89393603 G A HERC5 Missense_Mutation p.A448T 0.58 deleterious(0.01) benign(0.181) TCGA-D3-A8GI-06 4 90169592 90169592 G A GPRIN3 Missense_Mutation p.S557L 0.59 tolerated(0.32) benign(0.001) TCGA-D3-A8GI-06 4 90169664 90169664 C T GPRIN3 Missense_Mutation p.G533E 0.26 tolerated(0.13) benign(0.017) TCGA-D3-A8GI-06 4 91230034 91230034 C T CCSER1 Missense_Mutation p.S200F 0.13 deleterious(0) possibly_damaging(0.794) TCGA-D3-A8GI-06 4 93225818 93225818 T A GRID2 Missense_Mutation p.F4Y 0.64 tolerated_low_confidence(0.05) benign(0.02) TCGA-D3-A8GI-06 4 93225819 93225819 C T GRID2 Silent p.F4F 0.64 TCGA-D3-A8GI-06 4 94137989 94137989 G A GRID2 Missense_Mutation p.R297Q 0.55 tolerated(0.09) benign(0.234) TCGA-D3-A8GI-06 4 94138167 94138167 G A GRID2 Intron 0.26 TCGA-D3-A8GI-06 4 94376826 94376826 G A GRID2 Missense_Mutation p.G520E 0.29 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 4 94547430 94547430 G A GRID2 Missense_Mutation p.G735E 0.20 tolerated(0.17) benign(0.19) TCGA-D3-A8GI-06 4 94693436 94693436 C T GRID2 Silent p.I937I 0.27 TCGA-D3-A8GI-06 4 95497116 95497116 C T PDLIM5 Missense_Mutation p.S105F 0.53 deleterious(0) possibly_damaging(0.61) TCGA-D3-A8GI-06 4 96761714 96761714 G A PDHA2 Missense_Mutation p.G138E 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.20 tolerated(0.54) benign(0.001) TCGA-D3-A8GI-06 4 9783993 9783993 G A DRD5 Missense_Mutation p.D114N 0.34 tolerated(0.56) benign(0.055) TCGA-D3-A8GI-06 4 9784513 9784513 C T DRD5 Missense_Mutation p.S287F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 4 9784955 9784955 C T DRD5 Silent p.F434F 0.27 TCGA-D3-A8GI-06 4 9828114 9828114 G A SLC2A9 Silent p.I510I 0.22 TCGA-D3-A8GI-06 4 98480099 98480099 G A STPG2 3'UTR 0.67 TCGA-D3-A8GI-06 4 99049691 99049691 G A STPG2 Missense_Mutation p.P92L 0.30 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 4 99579426 99579426 C G TSPAN5 5'UTR 0.47 TCGA-D3-A8GI-06 5 101834233 101834233 G A SLCO6A1 Missense_Mutation p.R106C 0.48 tolerated(0.11) benign(0.043) TCGA-D3-A8GI-06 5 101834693 101834693 G A SLCO6A1 5'UTR 0.44 TCGA-D3-A8GI-06 5 102262314 102262314 G A PAM Silent p.E156E 0.25 TCGA-D3-A8GI-06 5 102286479 102286479 G A PAM Missense_Mutation p.R287K 0.16 deleterious(0.01) benign(0.103) TCGA-D3-A8GI-06 5 102342510 102342510 C T PAM Silent p.F603F 0.52 TCGA-D3-A8GI-06 5 1032303 1032303 C T NKD2 Missense_Mutation p.R60W 0.44 tolerated(0.16) benign(0.015) TCGA-D3-A8GI-06 5 10448400 10448400 C T ROPN1L Missense_Mutation p.P54S 0.31 tolerated(0.5) possibly_damaging(0.69) TCGA-D3-A8GI-06 5 1064031 1064031 G A SLC12A7 Silent p.I889I 0.40 TCGA-D3-A8GI-06 5 109106114 109106114 C T MAN2A1 Silent p.I356I 0.47 TCGA-D3-A8GI-06 5 109202737 109202737 T A MAN2A1 3'UTR 0.29 TCGA-D3-A8GI-06 5 110407616 110407616 C T TSLP Silent p.L10L 0.49 TCGA-D3-A8GI-06 5 111500806 111500806 C T EPB41L4A Missense_Mutation p.G648R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GI-06 5 111541182 111541182 C T EPB41L4A Missense_Mutation p.E400K 0.57 tolerated(0.37) benign(0.388) TCGA-D3-A8GI-06 5 112769704 112769704 C T TSSK1B Missense_Mutation p.G278E 0.32 tolerated(1) benign(0.007) TCGA-D3-A8GI-06 5 113831810 113831810 G A KCNN2 Silent p.R557R 0.53 TCGA-D3-A8GI-06 5 11384807 11384807 C T CTNND2 Missense_Mutation p.A383T 0.25 tolerated(0.06) possibly_damaging(0.621) TCGA-D3-A8GI-06 5 11397300 11397300 G A CTNND2 Missense_Mutation p.S152F 0.43 deleterious(0) possibly_damaging(0.862) TCGA-D3-A8GI-06 5 114483052 114483052 A T TRIM36 Missense_Mutation p.F113Y 0.52 tolerated(0.05) benign(0.216) TCGA-D3-A8GI-06 5 115336763 115336763 G A AQPEP Splice_Site p.X550_splice 0.25 TCGA-D3-A8GI-06 5 118485073 118485073 C T DMXL1 Missense_Mutation p.P1184L 0.38 deleterious(0) possibly_damaging(0.691) TCGA-D3-A8GI-06 5 118969720 118969720 G A FAM170A Missense_Mutation p.G93R 0.32 tolerated(0.28) benign(0.057) TCGA-D3-A8GI-06 5 118970081 118970081 C T FAM170A Missense_Mutation p.P213L 0.57 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 5 120021936 120021936 C T PRR16 Silent p.T126T 0.26 TCGA-D3-A8GI-06 5 121188018 121188018 G A FTMT Silent p.R120R 0.16 TCGA-D3-A8GI-06 5 121488417 121488417 G A ZNF474 Silent p.L244L 0.41 TCGA-D3-A8GI-06 5 121776435 121776435 C T SNCAIP Missense_Mutation p.L470F 0.56 deleterious(0) possibly_damaging(0.72) TCGA-D3-A8GI-06 5 121786468 121786468 C T SNCAIP Silent p.F642F 0.29 TCGA-D3-A8GI-06 5 121787105 121787105 G A SNCAIP Missense_Mutation p.D855N 0.29 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-D3-A8GI-06 5 126778805 126778805 G A MEGF10 Silent p.A826A 0.20 TCGA-D3-A8GI-06 5 127493814 127493814 C T SLC12A2 Silent p.F811F 0.25 TCGA-D3-A8GI-06 5 127637157 127637157 C T FBN2 Missense_Mutation p.G1988E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 5 127647109 127647109 C T FBN2 Missense_Mutation p.E1653K 0.29 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 5 127693030 127693030 C T FBN2 Missense_Mutation p.G871E 0.50 deleterious(0) possibly_damaging(0.82) TCGA-D3-A8GI-06 5 127700368 127700368 C T FBN2 Missense_Mutation p.E785K 0.34 deleterious(0) benign(0.348) TCGA-D3-A8GI-06 5 127728870 127728870 C T FBN2 Missense_Mutation p.G475S 0.47 tolerated(0.1) possibly_damaging(0.679) TCGA-D3-A8GI-06 5 128326098 128326098 G A SLC27A6 Missense_Mutation p.D304N 0.17 tolerated(1) benign(0.004) TCGA-D3-A8GI-06 5 128977595 128977595 A T ADAMTS19 Missense_Mutation p.K599I 0.51 deleterious(0.04) benign(0.067) TCGA-D3-A8GI-06 5 129037208 129037208 G A ADAMTS19 Missense_Mutation p.G1022R 0.24 deleterious(0.04) possibly_damaging(0.766) TCGA-D3-A8GI-06 5 130928157 130928157 G A RAPGEF6 Missense_Mutation p.S67L 0.20 deleterious(0.03) possibly_damaging(0.515) TCGA-D3-A8GI-06 5 131309092 131309092 G A ACSL6 Missense_Mutation p.S357F 0.59 tolerated(0.4) probably_damaging(0.921) TCGA-D3-A8GI-06 5 131310625 131310625 G A ACSL6 Silent p.S343S 0.40 TCGA-D3-A8GI-06 5 131310626 131310626 G A ACSL6 Missense_Mutation p.S343F 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 131324274 131324274 T A ACSL6 Intron 0.32 TCGA-D3-A8GI-06 5 131995932 131995932 C T IL13 Silent p.L133L 0.46 TCGA-D3-A8GI-06 5 132585123 132585123 G A FSTL4 Silent p.F291F 0.50 TCGA-D3-A8GI-06 5 134686578 134686578 G A H2AFY Intron 0.21 TCGA-D3-A8GI-06 5 135228163 135228163 C T IL9 Missense_Mutation p.A118T 0.23 tolerated(0.85) probably_damaging(0.945) TCGA-D3-A8GI-06 5 135610419 135610419 C T TRPC7 Missense_Mutation p.G357E 0.36 tolerated(0.17) benign(0.439) TCGA-D3-A8GI-06 5 135610433 135610433 G A TRPC7 Silent p.F352F 0.31 TCGA-D3-A8GI-06 5 135692568 135692568 G A TRPC7 Silent p.L170L 0.24 TCGA-D3-A8GI-06 5 136602702 136602702 G A SPOCK1 Nonsense_Mutation p.Q77* 0.54 TCGA-D3-A8GI-06 5 136993868 136993868 C T KLHL3 Silent p.L285L 0.36 TCGA-D3-A8GI-06 5 13700926 13700926 C T DNAH5 Missense_Mutation p.E4516K 0.52 possibly_damaging(0.621) TCGA-D3-A8GI-06 5 137013299 137013299 G A KLHL3 Silent p.L191L 0.48 TCGA-D3-A8GI-06 5 13716800 13716800 C T DNAH5 Splice_Site p.X4236_splice 0.34 TCGA-D3-A8GI-06 5 13735264 13735264 C T DNAH5 Missense_Mutation p.E3913K 0.45 benign(0.292) TCGA-D3-A8GI-06 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.32 possibly_damaging(0.898) TCGA-D3-A8GI-06 5 13770858 13770858 C T DNAH5 Missense_Mutation p.R3202K 0.54 benign(0.22) TCGA-D3-A8GI-06 5 137727612 137727612 C T KDM3B Missense_Mutation p.T764I 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-D3-A8GI-06 5 137803647 137803647 C T EGR1 Silent p.P503P 0.38 TCGA-D3-A8GI-06 5 13786302 13786302 C T DNAH5 Missense_Mutation p.V2936I 0.38 benign(0.299) TCGA-D3-A8GI-06 5 13794109 13794109 C T DNAH5 Missense_Mutation p.G2649E 0.42 probably_damaging(0.982) TCGA-D3-A8GI-06 5 13814842 13814842 G A DNAH5 Missense_Mutation p.P2368S 0.42 possibly_damaging(0.876) TCGA-D3-A8GI-06 5 13824424 13824424 G A DNAH5 Silent p.L2155L 0.51 TCGA-D3-A8GI-06 5 13829721 13829721 G A DNAH5 Silent p.I2114I 0.61 TCGA-D3-A8GI-06 5 13830737 13830737 C T DNAH5 Missense_Mutation p.M2010I 0.56 benign(0.072) TCGA-D3-A8GI-06 5 13841085 13841085 G A DNAH5 Missense_Mutation p.S1880F 0.57 possibly_damaging(0.485) TCGA-D3-A8GI-06 5 13845071 13845071 G A DNAH5 Missense_Mutation p.R1716W 0.38 benign(0.092) TCGA-D3-A8GI-06 5 13864545 13864545 G A DNAH5 Silent p.I1519I 0.53 TCGA-D3-A8GI-06 5 13885224 13885224 C T DNAH5 Missense_Mutation p.E953K 0.47 benign(0.292) TCGA-D3-A8GI-06 5 139006408 139006408 C T UBE2D2 3'UTR 0.53 TCGA-D3-A8GI-06 5 13911564 13911564 G A DNAH5 Silent p.F525F 0.50 TCGA-D3-A8GI-06 5 13914001 13914001 C T DNAH5 Missense_Mutation p.D463N 0.32 benign(0.015) TCGA-D3-A8GI-06 5 139216435 139216435 G A PSD2 Silent p.V481V 0.31 TCGA-D3-A8GI-06 5 139218220 139218220 G A PSD2 Missense_Mutation p.E611K 0.20 tolerated(0.25) probably_damaging(0.975) TCGA-D3-A8GI-06 5 13928284 13928284 C T DNAH5 Missense_Mutation p.E66K 0.57 benign(0.134) TCGA-D3-A8GI-06 5 139744056 139744056 C T SLC4A9 Silent p.F523F 0.23 TCGA-D3-A8GI-06 5 139938082 139938082 G A APBB3 3'UTR 0.29 TCGA-D3-A8GI-06 5 140166774 140166774 G A PCDHA1 Missense_Mutation p.G300E 0.49 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D3-A8GI-06 5 140167055 140167055 C T PCDHA1 Missense_Mutation p.P394S 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.778) TCGA-D3-A8GI-06 5 140167056 140167056 C T PCDHA1 Missense_Mutation p.P394L 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.604) TCGA-D3-A8GI-06 5 140167118 140167118 C T PCDHA1 Missense_Mutation p.R415C 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.61) TCGA-D3-A8GI-06 5 140182709 140182709 C T PCDHA3 Missense_Mutation p.P643S 0.47 tolerated_low_confidence(0.16) benign(0.107) TCGA-D3-A8GI-06 5 140187039 140187039 G A PCDHA4 Silent p.R89R 0.29 TCGA-D3-A8GI-06 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.40 deleterious_low_confidence(0.02) benign(0.081) TCGA-D3-A8GI-06 5 140188595 140188595 C T PCDHA4 Missense_Mutation p.S608L 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.577) TCGA-D3-A8GI-06 5 140201883 140201883 G A PCDHA5 Missense_Mutation p.E175K 0.58 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-D3-A8GI-06 5 140202658 140202658 C T PCDHA5 Missense_Mutation p.S433L 0.60 deleterious_low_confidence(0.04) possibly_damaging(0.596) TCGA-D3-A8GI-06 5 140203567 140203567 C T PCDHA5 Missense_Mutation p.P736L 0.64 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-D3-A8GI-06 5 140208318 140208318 C T PCDHA6 Silent p.A214A 0.51 TCGA-D3-A8GI-06 5 140208402 140208402 C T PCDHA6 Silent p.F242F 0.65 TCGA-D3-A8GI-06 5 140209115 140209115 G A PCDHA6 Missense_Mutation p.R480Q 0.56 tolerated_low_confidence(0.08) benign(0.104) TCGA-D3-A8GI-06 5 140209278 140209278 G A PCDHA6 Silent p.Q534Q 0.53 TCGA-D3-A8GI-06 5 140209672 140209672 C T PCDHA6 Silent p.L666L 0.58 TCGA-D3-A8GI-06 5 140214394 140214394 C T PCDHA7 Silent p.I142I 0.51 TCGA-D3-A8GI-06 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.26 tolerated_low_confidence(0.09) benign(0.294) TCGA-D3-A8GI-06 5 140229412 140229412 G A PCDHA9 Silent p.E444E 0.33 TCGA-D3-A8GI-06 5 140229956 140229956 C T PCDHA9 Silent p.L626L 0.51 TCGA-D3-A8GI-06 5 140230067 140230067 G A PCDHA9 Missense_Mutation p.A663T 0.25 deleterious_low_confidence(0.01) benign(0.159) TCGA-D3-A8GI-06 5 140236060 140236060 G A PCDHA10 Missense_Mutation p.E143K 0.54 deleterious_low_confidence(0.03) possibly_damaging(0.831) TCGA-D3-A8GI-06 5 140236503 140236503 G A PCDHA10 Silent p.R290R 0.57 TCGA-D3-A8GI-06 5 140237229 140237229 C T PCDHA10 Silent p.F532F 0.33 TCGA-D3-A8GI-06 5 140242596 140242596 C T AC005609.1 Missense_Mutation p.R127H 0.71 tolerated_low_confidence(0.08) possibly_damaging(0.715) TCGA-D3-A8GI-06 5 140249602 140249602 G A PCDHA11 Missense_Mutation p.G305E 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-D3-A8GI-06 5 140250074 140250074 C T PCDHA11 Silent p.F462F 0.54 TCGA-D3-A8GI-06 5 140262982 140262982 C T PCDHA13 Missense_Mutation p.R377C 0.28 tolerated_low_confidence(0.05) possibly_damaging(0.489) TCGA-D3-A8GI-06 5 140263117 140263117 G A PCDHA13 Missense_Mutation p.E422K 0.30 tolerated_low_confidence(0.32) benign(0.04) TCGA-D3-A8GI-06 5 140263574 140263574 G A PCDHA13 Missense_Mutation p.G574E 0.60 tolerated_low_confidence(0.06) benign(0.13) TCGA-D3-A8GI-06 5 140308279 140308279 C T PCDHAC1 Missense_Mutation p.S601F 0.33 tolerated(0.31) benign(0.025) TCGA-D3-A8GI-06 5 140308886 140308886 G A PCDHAC1 Silent p.G803G 0.23 TCGA-D3-A8GI-06 5 140308927 140308927 G A PCDHAC1 Intron 0.23 TCGA-D3-A8GI-06 5 140389475 140389475 G A PCDHAC1 Missense_Mutation p.E949K 0.34 deleterious(0.01) benign(0.288) TCGA-D3-A8GI-06 5 140431700 140431700 G A PCDHB1 Silent p.V215V 0.32 TCGA-D3-A8GI-06 5 140432672 140432672 C T PCDHB1 Silent p.F539F 0.59 TCGA-D3-A8GI-06 5 140432764 140432764 C A PCDHB1 Missense_Mutation p.T570N 0.54 deleterious(0) possibly_damaging(0.543) TCGA-D3-A8GI-06 5 140432765 140432765 C T PCDHB1 Silent p.T570T 0.55 TCGA-D3-A8GI-06 5 140433472 140433472 G A PCDHB1 Missense_Mutation p.R806K 0.32 tolerated(0.91) benign(0.046) TCGA-D3-A8GI-06 5 140475363 140475363 C T PCDHB2 Missense_Mutation p.S330F 0.57 tolerated_low_confidence(0.07) benign(0.232) TCGA-D3-A8GI-06 5 140476030 140476030 G A PCDHB2 Silent p.L552L 0.47 TCGA-D3-A8GI-06 5 140476760 140476760 G A PCDHB2 Missense_Mutation p.E796K 0.30 tolerated_low_confidence(0.35) benign(0.005) TCGA-D3-A8GI-06 5 140481617 140481617 G A PCDHB3 Missense_Mutation p.E462K 0.63 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-D3-A8GI-06 5 140503930 140503930 G A PCDHB4 Missense_Mutation p.E784K 0.50 tolerated_low_confidence(0.07) benign(0.013) TCGA-D3-A8GI-06 5 140515196 140515196 C T PCDHB5 Silent p.A60A 0.54 TCGA-D3-A8GI-06 5 140530901 140530901 C T PCDHB6 Missense_Mutation p.P355S 0.50 deleterious_low_confidence(0.04) benign(0.103) TCGA-D3-A8GI-06 5 140537045 140537045 C T PCDHB17 Missense_Mutation p.S490L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-D3-A8GI-06 5 140537261 140537261 C T PCDHB17 Missense_Mutation p.S562L 0.58 tolerated_low_confidence(0.13) benign(0.018) TCGA-D3-A8GI-06 5 140554580 140554580 C T PCDHB7 Missense_Mutation p.R722C 0.28 tolerated_low_confidence(0.09) benign(0.007) TCGA-D3-A8GI-06 5 140557587 140557587 C T PCDHB8 5'UTR 0.20 TCGA-D3-A8GI-06 5 140557730 140557730 G A PCDHB8 Missense_Mutation p.E39K 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 140558477 140558477 G A PCDHB8 Missense_Mutation p.E288K 0.23 tolerated_low_confidence(0.06) benign(0.008) TCGA-D3-A8GI-06 5 140558514 140558514 G A PCDHB8 Missense_Mutation p.G300E 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-D3-A8GI-06 5 140572614 140572614 A G PCDHB10 Silent p.G163G 0.46 TCGA-D3-A8GI-06 5 140574255 140574255 C T PCDHB10 Silent p.F710F 0.52 TCGA-D3-A8GI-06 5 140579453 140579453 G A PCDHB11 Missense_Mutation p.A36T 0.53 tolerated_low_confidence(0.37) benign(0.021) TCGA-D3-A8GI-06 5 140594639 140594639 C T PCDHB13 Missense_Mutation p.S315F 0.61 tolerated_low_confidence(0.09) benign(0.018) TCGA-D3-A8GI-06 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.22 tolerated_low_confidence(0.23) benign(0.002) TCGA-D3-A8GI-06 5 140615792 140615792 G A PCDHB18 RNA 0.48 TCGA-D3-A8GI-06 5 140626935 140626935 G A PCDHB15 Missense_Mutation p.G597S 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GI-06 5 140627301 140627301 G A PCDHB15 Missense_Mutation p.A719T 0.31 tolerated_low_confidence(0.06) benign(0.142) TCGA-D3-A8GI-06 5 140712561 140712561 C T PCDHGA1 Silent p.F770F 0.48 TCGA-D3-A8GI-06 5 140719558 140719558 G A PCDHGA2 Silent p.V340V 0.18 TCGA-D3-A8GI-06 5 140720666 140720666 G C PCDHGA2 Missense_Mutation p.V710L 0.15 tolerated_low_confidence(0.06) benign(0.041) TCGA-D3-A8GI-06 5 140724015 140724015 G A PCDHGA3 Missense_Mutation p.E139K 0.67 tolerated_low_confidence(0.13) benign(0.064) TCGA-D3-A8GI-06 5 140740084 140740084 G A PCDHGB2 Missense_Mutation p.D128N 0.46 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 5 140753881 140753881 G A PCDHGA6 Silent p.L77L 0.49 TCGA-D3-A8GI-06 5 140763059 140763059 G A PCDHGA7 Missense_Mutation p.R198Q 0.57 tolerated_low_confidence(0.25) benign(0.025) TCGA-D3-A8GI-06 5 140773326 140773326 G A PCDHGA8 Missense_Mutation p.E316K 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-D3-A8GI-06 5 140773736 140773736 C T PCDHGA8 Silent p.F452F 0.23 TCGA-D3-A8GI-06 5 140811660 140811660 C T PCDHGA12 Missense_Mutation p.T445I 0.18 tolerated_low_confidence(1) benign(0.008) TCGA-D3-A8GI-06 5 140869034 140869034 C T PCDHGC5 Missense_Mutation p.S76F 0.30 tolerated(0.06) possibly_damaging(0.694) TCGA-D3-A8GI-06 5 140961908 140961908 G A DIAPH1 Missense_Mutation p.R219C 0.57 unknown(0) TCGA-D3-A8GI-06 5 141033557 141033557 G A ARAP3 Missense_Mutation p.P1532L 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GI-06 5 141035448 141035448 G A ARAP3 Silent p.I1320I 0.31 TCGA-D3-A8GI-06 5 141243222 141243222 C T PCDH1 Missense_Mutation p.E892K 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A8GI-06 5 141335344 141335344 C T PCDH12 Silent p.L691L 0.54 TCGA-D3-A8GI-06 5 142601985 142601985 C T ARHGAP26 Missense_Mutation p.P807S 0.44 deleterious(0) possibly_damaging(0.876) TCGA-D3-A8GI-06 5 142780093 142780093 G A NR3C1 Silent p.F104F 0.28 TCGA-D3-A8GI-06 5 14291051 14291051 T A TRIO Missense_Mutation p.M256K 0.31 benign(0.258) TCGA-D3-A8GI-06 5 143853220 143853220 C T KCTD16 Intron 0.27 TCGA-D3-A8GI-06 5 143853624 143853624 C T KCTD16 Missense_Mutation p.P412S 0.25 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 5 14463011 14463011 C T TRIO Nonsense_Mutation p.Q1882* 0.60 TCGA-D3-A8GI-06 5 145202652 145202652 C T PRELID2 Missense_Mutation p.E41K 0.50 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A8GI-06 5 145252247 145252247 G A GRXCR2 Silent p.T95T 0.45 TCGA-D3-A8GI-06 5 145427347 145427347 C T SH3RF2 Missense_Mutation p.H358Y 0.24 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 5 145442062 145442062 G A SH3RF2 Missense_Mutation p.G663E 0.25 deleterious(0.01) possibly_damaging(0.721) TCGA-D3-A8GI-06 5 145665698 145665698 C T RBM27 3'UTR 0.86 TCGA-D3-A8GI-06 5 145894987 145894987 T A GPR151 Missense_Mutation p.K230N 0.46 deleterious(0.01) benign(0.243) TCGA-D3-A8GI-06 5 145895171 145895171 G A GPR151 Missense_Mutation p.P169L 0.59 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GI-06 5 145979917 145979917 C T PPP2R2B Silent p.R302R 0.24 TCGA-D3-A8GI-06 5 146798106 146798106 G A DPYSL3 Missense_Mutation p.H187Y 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 5 147040583 147040583 C T JAKMIP2 Silent p.R185R 0.31 TCGA-D3-A8GI-06 5 147258296 147258296 C T SCGB3A2 5'UTR 0.13 TCGA-D3-A8GI-06 5 147281259 147281259 T C C5orf46 Missense_Mutation p.S50G 0.46 deleterious(0.02) benign(0.001) TCGA-D3-A8GI-06 5 147495959 147495959 G A SPINK5 Missense_Mutation p.R681K 0.56 tolerated(0.57) benign(0.028) TCGA-D3-A8GI-06 5 147516581 147516581 G A SPINK5 3'UTR 0.29 TCGA-D3-A8GI-06 5 14769190 14769190 G A ANKH Silent p.F69F 0.61 TCGA-D3-A8GI-06 5 147900526 147900526 C T HTR4 Intron 0.56 TCGA-D3-A8GI-06 5 148392245 148392245 C T SH3TC2 Missense_Mutation p.D1036N 0.73 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GI-06 5 148407020 148407020 G A SH3TC2 Silent p.L759L 0.30 TCGA-D3-A8GI-06 5 148999922 148999922 C T ARHGEF37 Silent p.F300F 0.58 TCGA-D3-A8GI-06 5 149006810 149006810 G A ARHGEF37 Missense_Mutation p.G546S 0.24 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 5 149279076 149279076 C T PDE6A Silent p.L375L 0.47 TCGA-D3-A8GI-06 5 149457696 149457696 G A CSF1R Silent p.F236F 0.53 TCGA-D3-A8GI-06 5 1494969 1494969 G A LPCAT1 Silent p.H113H 0.53 TCGA-D3-A8GI-06 5 149502735 149502735 G A PDGFRB Missense_Mutation p.R685C 0.63 tolerated(0.1) benign(0.097) TCGA-D3-A8GI-06 5 149576337 149576337 C T SLC6A7 Silent p.F92F 0.59 TCGA-D3-A8GI-06 5 149644552 149644552 G A CAMK2A Missense_Mutation p.R62C 0.53 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D3-A8GI-06 5 150410310 150410310 T C TNIP1 Splice_Site p.X626_splice 0.44 TCGA-D3-A8GI-06 5 150413244 150413244 G A TNIP1 Silent p.S568S 0.40 TCGA-D3-A8GI-06 5 150584961 150584961 C T CCDC69 Missense_Mutation p.A42T 0.65 tolerated(0.14) benign(0.009) TCGA-D3-A8GI-06 5 150911460 150911460 C T FAT2 Missense_Mutation p.G3167R 0.59 probably_damaging(1) TCGA-D3-A8GI-06 5 151784797 151784797 C T NMUR2 5'UTR 0.30 TCGA-D3-A8GI-06 5 153054187 153054187 G A GRIA1 Missense_Mutation p.R286Q 0.31 deleterious(0.05) benign(0.342) TCGA-D3-A8GI-06 5 153144056 153144056 C T GRIA1 Missense_Mutation p.S639L 0.53 deleterious(0) benign(0.044) TCGA-D3-A8GI-06 5 153190641 153190641 C T GRIA1 Silent p.L869L 0.57 TCGA-D3-A8GI-06 5 153190873 153190873 G A GRIA1 3'UTR 0.46 TCGA-D3-A8GI-06 5 153372447 153372447 A - FAM114A2 3'UTR 0.22 TCGA-D3-A8GI-06 5 153433425 153433425 C T MFAP3 3'UTR 0.30 TCGA-D3-A8GI-06 5 153726686 153726686 C T GALNT10 Intron 0.43 TCGA-D3-A8GI-06 5 154393374 154393374 G A KIF4B 5'UTR 0.31 TCGA-D3-A8GI-06 5 154394586 154394586 G A KIF4B Missense_Mutation p.M389I 0.66 tolerated(0.11) benign(0.002) TCGA-D3-A8GI-06 5 156522370 156522370 C T HAVCR2 Missense_Mutation p.G208E 0.26 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GI-06 5 156533942 156533942 G A HAVCR2 Silent p.V30V 0.29 TCGA-D3-A8GI-06 5 156589701 156589701 T A FAM71B Silent p.G525G 0.33 TCGA-D3-A8GI-06 5 156638368 156638368 C T ITK Missense_Mutation p.A105V 0.51 deleterious(0.05) benign(0.201) TCGA-D3-A8GI-06 5 156641287 156641287 G A ITK Silent p.E137E 0.37 TCGA-D3-A8GI-06 5 156670727 156670727 G A ITK Silent p.K385K 0.23 TCGA-D3-A8GI-06 5 156671473 156671473 C T ITK Silent p.V478V 0.42 TCGA-D3-A8GI-06 5 156770028 156770028 C T FNDC9 Missense_Mutation p.E173K 0.50 deleterious(0.04) benign(0.254) TCGA-D3-A8GI-06 5 156819927 156819927 C T CYFIP2 Silent p.S1201S 0.28 TCGA-D3-A8GI-06 5 156898798 156898798 G A NIPAL4 Missense_Mutation p.E249K 0.46 deleterious(0.05) possibly_damaging(0.72) TCGA-D3-A8GI-06 5 156919983 156919983 G A ADAM19 Missense_Mutation p.H636Y 0.24 tolerated(0.07) probably_damaging(0.974) TCGA-D3-A8GI-06 5 156991401 156991401 G A ADAM19 Silent p.I77I 0.55 TCGA-D3-A8GI-06 5 159776183 159776183 C T C1QTNF2 Missense_Mutation p.E329K 0.34 tolerated_low_confidence(0.09) probably_damaging(0.956) TCGA-D3-A8GI-06 5 159992643 159992643 C T ATP10B Silent p.Q1401Q 0.31 TCGA-D3-A8GI-06 5 160039886 160039886 C T ATP10B Silent p.T900T 0.22 TCGA-D3-A8GI-06 5 160061601 160061601 T A ATP10B Missense_Mutation p.I381F 0.34 deleterious(0) possibly_damaging(0.892) TCGA-D3-A8GI-06 5 160097490 160097490 C G ATP10B Missense_Mutation p.V219L 0.20 deleterious(0.02) possibly_damaging(0.79) TCGA-D3-A8GI-06 5 160097567 160097567 G A ATP10B Missense_Mutation p.S193F 0.21 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 5 16067482 16067482 C T MARCH11 3'UTR 0.39 TCGA-D3-A8GI-06 5 160721128 160721128 G A GABRB2 Missense_Mutation p.S500F 0.27 tolerated(0.55) benign(0.178) TCGA-D3-A8GI-06 5 161112951 161112951 G A GABRA6 5'UTR 0.57 TCGA-D3-A8GI-06 5 161277872 161277872 G A GABRA1 Missense_Mutation p.S19N 0.25 tolerated(0.63) benign(0) TCGA-D3-A8GI-06 5 161322876 161322876 T A GABRA1 Splice_Site p.X353_splice 0.46 TCGA-D3-A8GI-06 5 167182079 167182079 G A TENM2 Intron 0.28 TCGA-D3-A8GI-06 5 167674281 167674281 C T TENM2 Missense_Mutation p.P2113S 0.48 tolerated(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 5 168100253 168100253 C T SLIT3 Missense_Mutation p.G1257E 0.49 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GI-06 5 168135092 168135092 G A SLIT3 Silent p.I911I 0.60 TCGA-D3-A8GI-06 5 168151438 168151438 G A SLIT3 Silent p.L774L 0.20 TCGA-D3-A8GI-06 5 168180062 168180062 G A SLIT3 Missense_Mutation p.T624I 0.59 deleterious(0) probably_damaging(0.925) TCGA-D3-A8GI-06 5 168180928 168180928 C T SLIT3 Silent p.G590G 0.22 TCGA-D3-A8GI-06 5 168187942 168187942 C T SLIT3 Splice_Site p.X537_splice 0.52 TCGA-D3-A8GI-06 5 168189564 168189564 G A SLIT3 Silent p.L530L 0.62 TCGA-D3-A8GI-06 5 168189671 168189671 A G SLIT3 Missense_Mutation p.F495L 0.24 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 5 168233482 168233482 G A SLIT3 Missense_Mutation p.P302S 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 168233512 168233512 C T SLIT3 Missense_Mutation p.D292N 0.53 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GI-06 5 169122868 169122868 T G DOCK2 Missense_Mutation p.V302G 0.53 deleterious(0) possibly_damaging(0.48) TCGA-D3-A8GI-06 5 169122869 169122869 C T DOCK2 Silent p.V302V 0.51 TCGA-D3-A8GI-06 5 169141072 169141072 C T DOCK2 Missense_Mutation p.T567I 0.27 tolerated(0.06) benign(0.285) TCGA-D3-A8GI-06 5 169535621 169535621 G A FOXI1 3'UTR 0.25 TCGA-D3-A8GI-06 5 169535641 169535641 G A FOXI1 3'UTR 0.33 TCGA-D3-A8GI-06 5 170669709 170669709 T C RANBP17 Silent p.S887S 0.25 TCGA-D3-A8GI-06 5 17275846 17275846 C T BASP1 Missense_Mutation p.P174L 0.53 deleterious(0) probably_damaging(0.945) TCGA-D3-A8GI-06 5 173378909 173378909 T G CPEB4 Missense_Mutation p.F583C 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 5 175524374 175524374 C T FAM153B Missense_Mutation p.P76L 0.25 tolerated_low_confidence(0.25) benign(0) TCGA-D3-A8GI-06 5 175572157 175572157 T A RP11-844P9.2 RNA 0.30 TCGA-D3-A8GI-06 5 176011494 176011494 G A CDHR2 Missense_Mutation p.G738S 0.24 tolerated(0.09) possibly_damaging(0.57) TCGA-D3-A8GI-06 5 176017645 176017645 G A CDHR2 Missense_Mutation p.V1166I 0.56 tolerated(0.33) benign(0.013) TCGA-D3-A8GI-06 5 176025717 176025717 G A GPRIN1 Silent p.F373F 0.35 TCGA-D3-A8GI-06 5 176056553 176056553 C T SNCB Missense_Mutation p.E35K 0.52 deleterious(0.01) possibly_damaging(0.454) TCGA-D3-A8GI-06 5 176289708 176289708 G A UNC5A Missense_Mutation p.D52N 0.32 deleterious(0.03) possibly_damaging(0.637) TCGA-D3-A8GI-06 5 176301461 176301461 C T UNC5A Silent p.S424S 0.22 TCGA-D3-A8GI-06 5 176385151 176385151 G A UIMC1 Missense_Mutation p.S402F 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 5 178194253 178194253 C T AACSP1 RNA 0.22 TCGA-D3-A8GI-06 5 178417607 178417607 C T GRM6 Missense_Mutation p.R333K 0.74 tolerated(0.05) benign(0.063) TCGA-D3-A8GI-06 5 178418435 178418435 C T GRM6 Missense_Mutation p.D283N 0.25 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GI-06 5 178505775 178505775 C T ZNF354C Silent p.S114S 0.20 TCGA-D3-A8GI-06 5 178559258 178559258 C T ADAMTS2 Missense_Mutation p.E755K 0.47 tolerated(0.05) probably_damaging(0.954) TCGA-D3-A8GI-06 5 179292268 179292268 G A TBC1D9B Missense_Mutation p.P1020S 0.18 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GI-06 5 180046678 180046678 C T FLT4 Silent p.V878V 0.25 TCGA-D3-A8GI-06 5 180166481 180166481 C T OR2Y1 Missense_Mutation p.G193E 0.28 tolerated(0.28) benign(0.033) TCGA-D3-A8GI-06 5 180166779 180166779 G A OR2Y1 Missense_Mutation p.R94C 0.28 deleterious(0) benign(0.39) TCGA-D3-A8GI-06 5 180338478 180338478 C T BTNL8 Silent p.S179S 0.33 TCGA-D3-A8GI-06 5 180377239 180377239 C T BTNL8 Missense_Mutation p.P400S 0.28 deleterious(0.02) probably_damaging(0.924) TCGA-D3-A8GI-06 5 1878884 1878884 C T IRX4 Silent p.K253K 0.72 TCGA-D3-A8GI-06 5 19473165 19473165 C T CDH18 3'UTR 0.25 TCGA-D3-A8GI-06 5 21783548 21783548 C T CDH12 Missense_Mutation p.E438K 0.47 tolerated(0.06) benign(0.184) TCGA-D3-A8GI-06 5 21817115 21817115 C T CDH12 Missense_Mutation p.G314E 0.31 tolerated(1) benign(0.07) TCGA-D3-A8GI-06 5 226137 226137 C T SDHA Missense_Mutation p.S199L 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GI-06 5 24537681 24537681 G A CDH10 Missense_Mutation p.H112Y 0.47 tolerated(0.07) probably_damaging(0.917) TCGA-D3-A8GI-06 5 26881078 26881078 T G CDH9 3'UTR 0.50 TCGA-D3-A8GI-06 5 26881619 26881619 C T CDH9 Missense_Mutation p.E666K 0.50 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 5 26885787 26885787 G A CDH9 Silent p.I606I 0.60 TCGA-D3-A8GI-06 5 26902613 26902613 C T CDH9 Missense_Mutation p.D409N 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 5 26903894 26903894 C T CDH9 Missense_Mutation p.G284E 0.56 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A8GI-06 5 31323026 31323026 G A CDH6 Missense_Mutation p.E662K 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.58 deleterious(0) possibly_damaging(0.482) TCGA-D3-A8GI-06 5 32091281 32091281 A G PDZD2 Missense_Mutation p.N2576S 0.30 tolerated(1) benign(0.005) TCGA-D3-A8GI-06 5 33546176 33546176 C T ADAMTS12 Silent p.G1478G 0.35 TCGA-D3-A8GI-06 5 33577182 33577182 C T ADAMTS12 Silent p.R983R 0.33 TCGA-D3-A8GI-06 5 33616140 33616140 C T ADAMTS12 Silent p.R727R 0.27 TCGA-D3-A8GI-06 5 33954596 33954596 A G SLC45A2 Missense_Mutation p.M301T 0.33 tolerated(0.29) possibly_damaging(0.493) TCGA-D3-A8GI-06 5 34796047 34796047 C T RAI14 Silent p.F60F 0.51 TCGA-D3-A8GI-06 5 35072722 35072722 G A PRLR Silent p.L166L 0.52 TCGA-D3-A8GI-06 5 35641564 35641564 C T SPEF2 Missense_Mutation p.R65C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 35641626 35641626 C T SPEF2 Silent p.I85I 0.39 TCGA-D3-A8GI-06 5 35641751 35641751 G A SPEF2 Missense_Mutation p.R127K 0.42 tolerated(1) benign(0.009) TCGA-D3-A8GI-06 5 35641783 35641783 G A SPEF2 Missense_Mutation p.E138K 0.41 deleterious(0) possibly_damaging(0.504) TCGA-D3-A8GI-06 5 35644476 35644476 C T SPEF2 Missense_Mutation p.P145L 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 35774072 35774072 G A SPEF2 Missense_Mutation p.E1343K 0.34 tolerated(0.15) benign(0.017) TCGA-D3-A8GI-06 5 35795829 35795829 G A SPEF2 Missense_Mutation p.E1588K 0.37 tolerated(0.07) benign(0.012) TCGA-D3-A8GI-06 5 35800200 35800200 G A SPEF2 Missense_Mutation p.G1654E 0.60 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GI-06 5 35806947 35806947 G A SPEF2 Missense_Mutation p.E1717K 0.55 tolerated(0.09) probably_damaging(0.997) TCGA-D3-A8GI-06 5 35857117 35857117 C T IL7R Missense_Mutation p.S13F 0.54 tolerated(0.78) benign(0.002) TCGA-D3-A8GI-06 5 35861085 35861085 G A IL7R Missense_Mutation p.E72K 0.51 tolerated(0.29) benign(0.07) TCGA-D3-A8GI-06 5 35876496 35876496 C T IL7R Missense_Mutation p.P430S 0.45 tolerated(0.14) benign(0.377) TCGA-D3-A8GI-06 5 35910626 35910626 C T CAPSL Missense_Mutation p.D53N 0.44 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GI-06 5 35955898 35955898 C A UGT3A1 Missense_Mutation p.G382C 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 5 35968169 35968169 C T UGT3A1 Missense_Mutation p.R88K 0.37 tolerated(0.21) benign(0.004) TCGA-D3-A8GI-06 5 35991307 35991307 G A UGT3A1 Silent p.F12F 0.56 TCGA-D3-A8GI-06 5 36038042 36038042 G A UGT3A2 Silent p.P384P 0.56 TCGA-D3-A8GI-06 5 36039597 36039597 G A UGT3A2 Missense_Mutation p.P353S 0.45 tolerated(0.09) possibly_damaging(0.856) TCGA-D3-A8GI-06 5 36039665 36039665 T C UGT3A2 Missense_Mutation p.K330R 0.47 tolerated(1) benign(0.068) TCGA-D3-A8GI-06 5 36049333 36049333 G A UGT3A2 Silent p.S167S 0.36 TCGA-D3-A8GI-06 5 36066817 36066817 G A UGT3A2 Silent p.I25I 0.32 TCGA-D3-A8GI-06 5 36066905 36066905 G A UGT3A2 5'UTR 0.49 TCGA-D3-A8GI-06 5 36141237 36141237 C T LMBRD2 Missense_Mutation p.V114M 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 36629618 36629618 T A SLC1A3 Missense_Mutation p.F83Y 0.33 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A8GI-06 5 36629621 36629621 C T SLC1A3 Missense_Mutation p.P84L 0.55 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GI-06 5 37815967 37815967 A T GDNF Missense_Mutation p.I158N 0.34 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GI-06 5 38412654 38412654 C T EGFLAM Silent p.I466I 0.51 TCGA-D3-A8GI-06 5 38418331 38418331 G A EGFLAM Missense_Mutation p.G553E 0.50 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GI-06 5 38481997 38481997 C T LIFR Silent p.G998G 0.30 TCGA-D3-A8GI-06 5 38490359 38490359 G A LIFR Silent p.F700F 0.44 TCGA-D3-A8GI-06 5 38496579 38496579 C T LIFR Missense_Mutation p.R597Q 0.48 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 5 38881727 38881727 G A OSMR Silent p.Q93Q 0.54 TCGA-D3-A8GI-06 5 38883966 38883966 C T OSMR Silent p.F152F 0.28 TCGA-D3-A8GI-06 5 38962600 38962600 C T RICTOR Missense_Mutation p.G552E 0.28 tolerated(0.08) possibly_damaging(0.49) TCGA-D3-A8GI-06 5 39202858 39202858 A G FYB Missense_Mutation p.S79P 0.37 tolerated(0.11) benign(0.007) TCGA-D3-A8GI-06 5 39331882 39331882 G A C9 Missense_Mutation p.P171S 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 5 40853128 40853128 G T CARD6 Missense_Mutation p.W565L 0.57 deleterious(0.01) possibly_damaging(0.468) TCGA-D3-A8GI-06 5 40853348 40853348 C T CARD6 Silent p.L638L 0.50 TCGA-D3-A8GI-06 5 40945418 40945418 C T C7 Missense_Mutation p.S229L 0.50 deleterious(0.04) benign(0.2) TCGA-D3-A8GI-06 5 40955609 40955609 C T C7 Missense_Mutation p.A405V 0.48 tolerated(0.21) benign(0.009) TCGA-D3-A8GI-06 5 41000357 41000357 C T MROH2B Missense_Mutation p.A1483T 0.37 tolerated(0.4) benign(0.098) TCGA-D3-A8GI-06 5 41018445 41018445 C T MROH2B Missense_Mutation p.E921K 0.60 tolerated(0.13) benign(0.014) TCGA-D3-A8GI-06 5 41018451 41018451 C T MROH2B Missense_Mutation p.D919N 0.25 tolerated(0.34) benign(0.005) TCGA-D3-A8GI-06 5 41032899 41032899 C T MROH2B Missense_Mutation p.D796N 0.18 tolerated(0.07) benign(0.044) TCGA-D3-A8GI-06 5 41038977 41038977 C T MROH2B Missense_Mutation p.G692E 0.41 tolerated(0.26) possibly_damaging(0.556) TCGA-D3-A8GI-06 5 41057281 41057281 C T MROH2B Splice_Site p.X284_splice 0.40 TCGA-D3-A8GI-06 5 41064653 41064653 G A MROH2B Silent p.F127F 0.50 TCGA-D3-A8GI-06 5 41149451 41149451 C T C6 Missense_Mutation p.D839N 0.30 tolerated(0.17) benign(0.002) TCGA-D3-A8GI-06 5 41382280 41382280 G A PLCXD3 Missense_Mutation p.H154Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 5 43173458 43173458 T A ZNF131 Missense_Mutation p.F331I 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 5 45262483 45262483 A C HCN1 Missense_Mutation p.V738G 0.48 tolerated_low_confidence(0.41) benign(0) TCGA-D3-A8GI-06 5 45262818 45262818 C T HCN1 Silent p.V626V 0.59 TCGA-D3-A8GI-06 5 45262874 45262874 C T HCN1 Missense_Mutation p.D608N 0.32 deleterious(0.02) probably_damaging(0.984) TCGA-D3-A8GI-06 5 50689477 50689477 G A ISL1 3'UTR 0.15 TCGA-D3-A8GI-06 5 52145280 52145280 G A ITGA1 Missense_Mutation p.G48E 0.59 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 5 52221112 52221112 C T ITGA1 Missense_Mutation p.P803L 0.45 deleterious(0.05) benign(0.159) TCGA-D3-A8GI-06 5 5239802 5239802 C T ADAMTS16 Missense_Mutation p.H763Y 0.35 tolerated(0.16) benign(0.433) TCGA-D3-A8GI-06 5 54326395 54326395 G A GZMK Missense_Mutation p.D116N 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 5 54406021 54406021 C T GZMA 3'UTR 0.29 TCGA-D3-A8GI-06 5 54415688 54415688 G A CDC20B Missense_Mutation p.P467L 0.43 deleterious(0) possibly_damaging(0.628) TCGA-D3-A8GI-06 5 55059080 55059080 G A DDX4 Missense_Mutation p.G95S 0.21 deleterious_low_confidence(0.02) benign(0.019) TCGA-D3-A8GI-06 5 55407321 55407321 T G ANKRD55 Missense_Mutation p.L418F 0.26 deleterious_low_confidence(0.05) benign(0.013) TCGA-D3-A8GI-06 5 56777482 56777482 G A ACTBL2 Silent p.S351S 0.30 TCGA-D3-A8GI-06 5 61747632 61747632 C T IPO11 Missense_Mutation p.P170S 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 5 61923025 61923025 C T IPO11 Silent p.F976F 0.38 TCGA-D3-A8GI-06 5 63510244 63510244 C T RNF180 Missense_Mutation p.S364L 0.38 tolerated(0.14) benign(0.04) TCGA-D3-A8GI-06 5 64020342 64020342 G A SREK1IP1 Nonsense_Mutation p.Q113* 0.51 TCGA-D3-A8GI-06 5 64483962 64483962 C T ADAMTS6 Missense_Mutation p.G931R 0.31 deleterious(0.03) benign(0.313) TCGA-D3-A8GI-06 5 64625218 64625218 C T ADAMTS6 Missense_Mutation p.E404K 0.56 deleterious(0) possibly_damaging(0.896) TCGA-D3-A8GI-06 5 64747989 64747989 C T ADAMTS6 Missense_Mutation p.A300T 0.19 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 5 65350499 65350499 C T ERBB2IP Missense_Mutation p.P1118L 0.29 tolerated(0.43) benign(0.003) TCGA-D3-A8GI-06 5 68665247 68665247 C T TAF9 Intron 0.75 TCGA-D3-A8GI-06 5 68710003 68710003 C T RAD17 Missense_Mutation p.P644S 0.27 tolerated_low_confidence(0.25) benign(0.061) TCGA-D3-A8GI-06 5 68728379 68728379 G A MARVELD2 Missense_Mutation p.R403K 0.16 tolerated(0.84) benign(0.005) TCGA-D3-A8GI-06 5 68736276 68736276 G A MARVELD2 Splice_Site p.X502_splice 0.45 TCGA-D3-A8GI-06 5 68830651 68830651 C T OCLN Missense_Mutation p.S341F 0.47 tolerated(0.7) benign(0.006) TCGA-D3-A8GI-06 5 71411529 71411529 C T MAP1B Silent p.I63I 0.33 TCGA-D3-A8GI-06 5 71490694 71490694 G A MAP1B Silent p.K504K 0.24 TCGA-D3-A8GI-06 5 71491946 71491946 G A MAP1B Missense_Mutation p.D922N 0.18 probably_damaging(0.99) TCGA-D3-A8GI-06 5 71494801 71494801 A G MAP1B Silent p.Q1873Q 0.51 TCGA-D3-A8GI-06 5 71495498 71495498 C T MAP1B Missense_Mutation p.P2106S 0.61 possibly_damaging(0.613) TCGA-D3-A8GI-06 5 71516631 71516631 G A MRPS27 3'UTR 0.31 TCGA-D3-A8GI-06 5 71648516 71648516 C G PTCD2 Missense_Mutation p.L293V 0.23 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GI-06 5 72469103 72469103 C T TMEM174 Silent p.F11F 0.28 TCGA-D3-A8GI-06 5 73045710 73045710 G A ARHGEF28 Missense_Mutation p.E28K 0.26 tolerated(0.19) benign(0.015) TCGA-D3-A8GI-06 5 73207263 73207263 G A ARHGEF28 Missense_Mutation p.R1604K 0.24 tolerated(0.1) possibly_damaging(0.642) TCGA-D3-A8GI-06 5 7520946 7520946 C T ADCY2 Silent p.S168S 0.39 TCGA-D3-A8GI-06 5 75490788 75490788 G A SV2C Missense_Mutation p.G209R 0.24 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 5 75936860 75936860 C T IQGAP2 Missense_Mutation p.L676F 0.49 deleterious(0.02) benign(0.273) TCGA-D3-A8GI-06 5 76128620 76128620 A T F2RL1 Missense_Mutation p.E63V 0.55 deleterious(0.01) benign(0.211) TCGA-D3-A8GI-06 5 76645309 76645309 C T PDE8B Silent p.L314L 0.32 TCGA-D3-A8GI-06 5 78301130 78301130 G A DMGDH Missense_Mutation p.P784L 0.42 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 5 78322321 78322321 C T DMGDH Missense_Mutation p.G706R 0.26 deleterious(0.01) probably_damaging(0.939) TCGA-D3-A8GI-06 5 78326811 78326811 G A DMGDH Missense_Mutation p.R510C 0.29 deleterious(0.01) benign(0.021) TCGA-D3-A8GI-06 5 7869233 7869233 C T MTRR 5'UTR 0.37 TCGA-D3-A8GI-06 5 7895857 7895857 C T MTRR Missense_Mutation p.S550F 0.48 tolerated(0.72) benign(0.002) TCGA-D3-A8GI-06 5 7900200 7900200 C T MTRR 3'UTR 0.39 TCGA-D3-A8GI-06 5 79028641 79028641 C T CMYA5 Silent p.S1351S 0.59 TCGA-D3-A8GI-06 5 79029368 79029368 C T CMYA5 Missense_Mutation p.P1594S 0.58 benign(0) TCGA-D3-A8GI-06 5 79034445 79034445 T C CMYA5 Missense_Mutation p.F3286S 0.25 benign(0.064) TCGA-D3-A8GI-06 5 79059018 79059018 G A CMYA5 Silent p.E3847E 0.25 TCGA-D3-A8GI-06 5 79351722 79351722 G A THBS4 Missense_Mutation p.R136Q 0.35 tolerated(0.24) benign(0.004) TCGA-D3-A8GI-06 5 79355603 79355603 C T THBS4 Missense_Mutation p.R288C 0.92 tolerated(0.06) possibly_damaging(0.72) TCGA-D3-A8GI-06 5 80382693 80382693 G A RASGRF2 Silent p.R437R 0.49 TCGA-D3-A8GI-06 5 80504203 80504203 G A RASGRF2 Silent p.L1034L 0.43 TCGA-D3-A8GI-06 5 80504204 80504204 G A RASGRF2 Missense_Mutation p.D1035N 0.43 deleterious(0.03) probably_damaging(0.936) TCGA-D3-A8GI-06 5 825299 825299 C T ZDHHC11 Missense_Mutation p.D335N 0.29 tolerated_low_confidence(0.2) benign(0.355) TCGA-D3-A8GI-06 5 82937244 82937244 C T HAPLN1 3'UTR 0.60 TCGA-D3-A8GI-06 5 83433086 83433086 C T EDIL3 Missense_Mutation p.E148K 0.57 deleterious(0.03) benign(0.004) TCGA-D3-A8GI-06 5 87501695 87501695 G A TMEM161B Missense_Mutation p.P246S 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 5 89931040 89931040 G A GPR98 Missense_Mutation p.G650E 0.26 probably_damaging(0.972) TCGA-D3-A8GI-06 5 89939722 89939722 C T GPR98 Missense_Mutation p.P886S 0.22 possibly_damaging(0.857) TCGA-D3-A8GI-06 5 89949716 89949716 G A GPR98 Missense_Mutation p.G1442E 0.38 probably_damaging(0.993) TCGA-D3-A8GI-06 5 90106920 90106920 G A GPR98 Silent p.G5281G 0.28 TCGA-D3-A8GI-06 5 90124894 90124894 C T GPR98 Missense_Mutation p.S5501F 0.22 possibly_damaging(0.831) TCGA-D3-A8GI-06 5 9051989 9051989 G A SEMA5A Silent p.I947I 0.41 TCGA-D3-A8GI-06 5 9066581 9066581 C T SEMA5A Missense_Mutation p.E751K 0.52 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 5 912018 912018 C T TRIP13 Silent p.F309F 0.49 TCGA-D3-A8GI-06 5 9202171 9202171 C T SEMA5A Silent p.L276L 0.35 TCGA-D3-A8GI-06 5 94289061 94289061 C T MCTP1 Silent p.T281T 0.23 TCGA-D3-A8GI-06 5 94922289 94922289 C T ARSK Silent p.I241I 0.26 TCGA-D3-A8GI-06 5 94999657 94999657 C T SPATA9 Silent p.L158L 0.55 TCGA-D3-A8GI-06 5 95728673 95728673 G A PCSK1 3'UTR 0.53 TCGA-D3-A8GI-06 5 95728909 95728909 C T PCSK1 Silent p.K686K 0.66 TCGA-D3-A8GI-06 5 95748054 95748054 C T PCSK1 Missense_Mutation p.A284T 0.34 tolerated(0.11) probably_damaging(0.976) TCGA-D3-A8GI-06 5 96232179 96232179 G A ERAP2 Missense_Mutation p.E448K 0.62 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GI-06 5 96238007 96238007 C T ERAP2 Missense_Mutation p.S593F 0.60 tolerated(0.11) benign(0.282) TCGA-D3-A8GI-06 5 98206398 98206398 G A CHD1 Missense_Mutation p.S1324F 0.57 deleterious(0.04) benign(0.143) TCGA-D3-A8GI-06 6 100056660 100056660 C T PRDM13 Missense_Mutation p.S63F 0.28 deleterious(0.05) probably_damaging(0.929) TCGA-D3-A8GI-06 6 100838908 100838908 C T SIM1 Missense_Mutation p.E544K 0.40 tolerated_low_confidence(0.16) benign(0.339) TCGA-D3-A8GI-06 6 100841571 100841571 C T SIM1 Silent p.S454S 0.46 TCGA-D3-A8GI-06 6 100841650 100841650 G A SIM1 Missense_Mutation p.S428F 0.30 tolerated(0.08) possibly_damaging(0.879) TCGA-D3-A8GI-06 6 100895245 100895245 C T SIM1 Silent p.A299A 0.42 TCGA-D3-A8GI-06 6 100964096 100964096 G A ASCC3 Missense_Mutation p.S2012F 0.33 deleterious(0.02) benign(0.389) TCGA-D3-A8GI-06 6 102247639 102247639 G A GRIK2 Silent p.G356G 0.21 TCGA-D3-A8GI-06 6 102483220 102483220 C T GRIK2 Missense_Mutation p.S697L 0.35 deleterious(0) possibly_damaging(0.652) TCGA-D3-A8GI-06 6 105548995 105548995 G A BVES Missense_Mutation p.P351L 0.35 deleterious_low_confidence(0.01) benign(0.015) TCGA-D3-A8GI-06 6 105563609 105563609 C T BVES Missense_Mutation p.D304N 0.38 deleterious(0.01) possibly_damaging(0.847) TCGA-D3-A8GI-06 6 105607672 105607672 C T POPDC3 Missense_Mutation p.E170K 0.50 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A8GI-06 6 106960808 106960808 G A AIM1 Missense_Mutation p.E198K 0.50 deleterious(0.01) benign(0.424) TCGA-D3-A8GI-06 6 106969279 106969279 G A AIM1 Missense_Mutation p.R991Q 0.32 tolerated(0.34) benign(0.01) TCGA-D3-A8GI-06 6 106975236 106975236 G A AIM1 Missense_Mutation p.G1082E 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 10704764 10704764 C T PAK1IP1 Missense_Mutation p.P174L 0.60 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 6 10751374 10751374 C T TMEM14B Missense_Mutation p.P37S 0.32 deleterious(0.03) possibly_damaging(0.555) TCGA-D3-A8GI-06 6 10770462 10770462 T A MAK Silent p.G533G 0.27 TCGA-D3-A8GI-06 6 10770464 10770464 C T MAK Splice_Site p.X533_splice 0.29 TCGA-D3-A8GI-06 6 10874177 10874177 C T GCM2 3'UTR 0.37 TCGA-D3-A8GI-06 6 10902931 10902931 C T SYCP2L Missense_Mutation p.S163F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 6 10926589 10926589 G A SYCP2L Silent p.T412T 0.27 TCGA-D3-A8GI-06 6 109322511 109322511 G A SESN1 Missense_Mutation p.R176C 0.35 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GI-06 6 10956372 10956372 G A SYCP2L Missense_Mutation p.G687E 0.22 deleterious(0.04) possibly_damaging(0.656) TCGA-D3-A8GI-06 6 10956418 10956418 T C SYCP2L Silent p.G702G 0.49 TCGA-D3-A8GI-06 6 109802711 109802711 C T ZBTB24 Silent p.E173E 0.28 TCGA-D3-A8GI-06 6 109867090 109867090 C T AK9 Missense_Mutation p.E1069K 0.29 tolerated(0.14) benign(0.02) TCGA-D3-A8GI-06 6 109993185 109993185 G A AK9 Missense_Mutation p.P90S 0.31 tolerated(0.26) possibly_damaging(0.749) TCGA-D3-A8GI-06 6 112041221 112041221 T C FYN Missense_Mutation p.T12A 0.41 tolerated_low_confidence(0.85) benign(0.001) TCGA-D3-A8GI-06 6 112375502 112375502 G A WISP3 5'UTR 0.32 TCGA-D3-A8GI-06 6 112397573 112397573 C T TUBE1 Missense_Mutation p.M196I 0.38 tolerated(0.15) benign(0.063) TCGA-D3-A8GI-06 6 112671190 112671190 C T RFPL4B Missense_Mutation p.R94W 0.38 tolerated(0.2) benign(0.003) TCGA-D3-A8GI-06 6 116288781 116288781 C T FRK Silent p.Q244Q 0.38 TCGA-D3-A8GI-06 6 116288870 116288870 C T FRK Missense_Mutation p.A215T 0.43 tolerated(0.57) benign(0.001) TCGA-D3-A8GI-06 6 116559470 116559470 C T NT5DC1 Missense_Mutation p.P348S 0.28 tolerated(0.42) benign(0.004) TCGA-D3-A8GI-06 6 116757387 116757387 T C DSE Missense_Mutation p.F586L 0.43 deleterious(0.04) probably_damaging(0.987) TCGA-D3-A8GI-06 6 116836979 116836979 C T FAM26E Missense_Mutation p.P253S 0.37 tolerated(0.51) benign(0.06) TCGA-D3-A8GI-06 6 116988348 116988348 G A ZUFSP Missense_Mutation p.S3F 0.34 deleterious(0.03) benign(0.31) TCGA-D3-A8GI-06 6 117113293 117113293 C T GPRC6A 3'UTR 0.40 TCGA-D3-A8GI-06 6 117113785 117113785 G A GPRC6A Silent p.F767F 0.27 TCGA-D3-A8GI-06 6 117128073 117128073 G A GPRC6A Silent p.I265I 0.27 TCGA-D3-A8GI-06 6 117128082 117128082 C T GPRC6A Silent p.L262L 0.24 TCGA-D3-A8GI-06 6 117248655 117248655 G A RFX6 Missense_Mutation p.G784E 0.41 tolerated_low_confidence(0.15) possibly_damaging(0.475) TCGA-D3-A8GI-06 6 117250038 117250038 G A RFX6 Missense_Mutation p.D839N 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GI-06 6 117641147 117641147 G A ROS1 Missense_Mutation p.R1942W 0.27 deleterious(0.01) benign(0.176) TCGA-D3-A8GI-06 6 117665391 117665391 C T ROS1 Silent p.V1452V 0.38 TCGA-D3-A8GI-06 6 117686254 117686254 T C ROS1 Silent p.K1029K 0.36 TCGA-D3-A8GI-06 6 117708143 117708143 G A ROS1 Silent p.I678I 0.33 TCGA-D3-A8GI-06 6 118024839 118024839 C T NUS1 Missense_Mutation p.P255S 0.37 deleterious(0.01) probably_damaging(0.918) TCGA-D3-A8GI-06 6 118606444 118606444 C T SLC35F1 Silent p.S315S 0.41 TCGA-D3-A8GI-06 6 119324764 119324764 T - FAM184A Frame_Shift_Del p.Q613Hfs*10 0.19 TCGA-D3-A8GI-06 6 119611855 119611855 C T MAN1A1 Missense_Mutation p.G297E 0.37 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GI-06 6 119669729 119669729 A G MAN1A1 Missense_Mutation p.F168L 0.31 tolerated(0.76) benign(0) TCGA-D3-A8GI-06 6 121482179 121482179 G A TBC1D32 Missense_Mutation p.S865L 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 121544405 121544405 G A TBC1D32 Missense_Mutation p.R820C 0.36 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GI-06 6 125397899 125397899 C T RNF217 Nonsense_Mutation p.R168* 0.31 TCGA-D3-A8GI-06 6 125397908 125397908 G A RNF217 Missense_Mutation p.G171R 0.39 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 6 127898316 127898316 C T C6orf58 5'Flank 0.26 TCGA-D3-A8GI-06 6 127901554 127901554 C T C6orf58 Missense_Mutation p.S178F 0.38 tolerated(0.31) benign(0.305) TCGA-D3-A8GI-06 6 128040929 128040929 G A THEMIS Nonsense_Mutation p.Q639* 0.44 TCGA-D3-A8GI-06 6 128134093 128134093 C T THEMIS Missense_Mutation p.E565K 0.35 tolerated(0.15) benign(0.009) TCGA-D3-A8GI-06 6 128134306 128134306 C T THEMIS Missense_Mutation p.D494N 0.32 tolerated(0.81) benign(0.067) TCGA-D3-A8GI-06 6 128291342 128291342 C T PTPRK 3'UTR 0.32 TCGA-D3-A8GI-06 6 128388748 128388748 C T PTPRK Silent p.R691R 0.25 TCGA-D3-A8GI-06 6 128403649 128403649 G A PTPRK Silent p.F570F 0.41 TCGA-D3-A8GI-06 6 128411003 128411003 G A PTPRK Missense_Mutation p.R433C 0.36 tolerated(0.06) possibly_damaging(0.648) TCGA-D3-A8GI-06 6 128411070 128411070 C T PTPRK Nonsense_Mutation p.W410* 0.41 TCGA-D3-A8GI-06 6 129511471 129511471 C T LAMA2 Missense_Mutation p.S530F 0.35 tolerated(0.11) possibly_damaging(0.797) TCGA-D3-A8GI-06 6 129571305 129571305 G A LAMA2 Missense_Mutation p.E611K 0.42 tolerated(0.07) benign(0.008) TCGA-D3-A8GI-06 6 129637032 129637032 C T LAMA2 Silent p.I1287I 0.40 TCGA-D3-A8GI-06 6 129649444 129649444 C T LAMA2 Nonsense_Mutation p.R1400* 0.38 TCGA-D3-A8GI-06 6 129722475 129722475 C T LAMA2 Missense_Mutation p.S1851F 0.35 tolerated(0.08) possibly_damaging(0.492) TCGA-D3-A8GI-06 6 129837370 129837370 C T LAMA2 Missense_Mutation p.P3083S 0.35 tolerated(1) benign(0.023) TCGA-D3-A8GI-06 6 130154710 130154710 C T TMEM244 Missense_Mutation p.V72I 0.33 tolerated(0.29) possibly_damaging(0.513) TCGA-D3-A8GI-06 6 130387522 130387522 C T L3MBTL3 Missense_Mutation p.H297Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 130460844 130460844 C T L3MBTL3 Silent p.F763F 0.24 TCGA-D3-A8GI-06 6 130465694 130465694 C T SAMD3 Missense_Mutation p.E512K 0.50 tolerated_low_confidence(0.2) benign(0.003) TCGA-D3-A8GI-06 6 130496998 130496998 A C SAMD3 Silent p.L270L 0.41 TCGA-D3-A8GI-06 6 130497126 130497126 G A SAMD3 Missense_Mutation p.R228C 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 130505633 130505633 C T SAMD3 Silent p.R173R 0.29 TCGA-D3-A8GI-06 6 130761942 130761942 G A TMEM200A Missense_Mutation p.M125I 0.40 deleterious(0.03) possibly_damaging(0.6) TCGA-D3-A8GI-06 6 130762555 130762555 C T TMEM200A Missense_Mutation p.P330S 0.47 tolerated(0.47) benign(0.433) TCGA-D3-A8GI-06 6 130762690 130762690 C T TMEM200A Missense_Mutation p.P375S 0.28 deleterious(0.02) possibly_damaging(0.79) TCGA-D3-A8GI-06 6 131225633 131225633 G A EPB41L2 Missense_Mutation p.P301S 0.24 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 6 131225642 131225642 G A EPB41L2 Missense_Mutation p.P298S 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 131571664 131571664 C T AKAP7 Intron 0.35 TCGA-D3-A8GI-06 6 132021740 132021740 C T OR2A4 Missense_Mutation p.E268K 0.26 deleterious(0.03) possibly_damaging(0.733) TCGA-D3-A8GI-06 6 132029937 132029937 C T CTAGE9 Missense_Mutation p.D741N 0.27 tolerated(0.07) benign(0.162) TCGA-D3-A8GI-06 6 132029976 132029976 T C CTAGE9 Missense_Mutation p.T728A 0.36 tolerated(0.19) benign(0.008) TCGA-D3-A8GI-06 6 132031874 132031874 T A CTAGE9 Missense_Mutation p.K95M 0.44 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 6 132067995 132067995 G A ENPP3 Missense_Mutation p.E843K 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 132203549 132203549 C T ENPP1 Missense_Mutation p.P722L 0.43 tolerated(0.69) benign(0.309) TCGA-D3-A8GI-06 6 132891670 132891670 C T TAAR6 Silent p.L70L 0.43 TCGA-D3-A8GI-06 6 133004266 133004266 A T VNN1 3'UTR 0.27 TCGA-D3-A8GI-06 6 133013533 133013533 G A VNN1 Silent p.F339F 0.43 TCGA-D3-A8GI-06 6 133014203 133014203 G A VNN1 Silent p.F262F 0.38 TCGA-D3-A8GI-06 6 134210455 134210455 C T TCF21 5'UTR 0.50 TCGA-D3-A8GI-06 6 134349786 134349786 C T SLC2A12 Missense_Mutation p.G393R 0.33 tolerated(0.49) benign(0.005) TCGA-D3-A8GI-06 6 134493825 134493825 G A SGK1 Silent p.L308L 0.43 TCGA-D3-A8GI-06 6 134493829 134493829 G A SGK1 Silent p.G306G 0.42 TCGA-D3-A8GI-06 6 135518457 135518457 C T MYB Missense_Mutation p.S521L 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A8GI-06 6 135776925 135776925 G A AHI1 Missense_Mutation p.P431S 0.36 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 6 136494956 136494956 C T PDE7B Missense_Mutation p.H245Y 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 136590624 136590624 C T BCLAF1 Missense_Mutation p.E724K 0.12 tolerated(0.09) possibly_damaging(0.486) TCGA-D3-A8GI-06 6 136686984 136686984 C T MAP7 Missense_Mutation p.E410K 0.48 tolerated(0.06) benign(0.348) TCGA-D3-A8GI-06 6 137015432 137015432 C T MAP3K5 Missense_Mutation p.D367N 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 6 137245825 137245825 C T SLC35D3 Silent p.P414P 0.28 TCGA-D3-A8GI-06 6 138608018 138608018 G A KIAA1244 Missense_Mutation p.G917E 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 6 138640877 138640877 C T KIAA1244 Silent p.L1504L 0.37 TCGA-D3-A8GI-06 6 139186191 139186191 C T ECT2L Silent p.C450C 0.35 TCGA-D3-A8GI-06 6 139222128 139222128 G A ECT2L Missense_Mutation p.D820N 0.30 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 6 139266762 139266762 G A REPS1 Missense_Mutation p.S117F 0.37 deleterious(0.03) possibly_damaging(0.894) TCGA-D3-A8GI-06 6 139488056 139488056 C T HECA Missense_Mutation p.H303Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 6 139563751 139563751 C T TXLNB Missense_Mutation p.R656Q 0.39 tolerated_low_confidence(0.05) benign(0) TCGA-D3-A8GI-06 6 139564296 139564296 G A TXLNB Silent p.S474S 0.40 TCGA-D3-A8GI-06 6 139609910 139609910 G A TXLNB Nonsense_Mutation p.Q43* 0.38 TCGA-D3-A8GI-06 6 142691792 142691792 C T GPR126 Nonsense_Mutation p.R311* 0.36 TCGA-D3-A8GI-06 6 143074272 143074272 G A HIVEP2 Missense_Mutation p.P2438L 0.43 tolerated_low_confidence(0.12) benign(0.059) TCGA-D3-A8GI-06 6 143081418 143081418 G A HIVEP2 Nonsense_Mutation p.Q2003* 0.28 TCGA-D3-A8GI-06 6 144074921 144074921 C T PHACTR2 Missense_Mutation p.S109L 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A8GI-06 6 144081675 144081675 G A PHACTR2 Missense_Mutation p.G198S 0.36 tolerated(0.43) possibly_damaging(0.593) TCGA-D3-A8GI-06 6 144263077 144263077 G A PLAGL1 Silent p.G292G 0.39 TCGA-D3-A8GI-06 6 144263659 144263659 C T PLAGL1 Silent p.K98K 0.37 TCGA-D3-A8GI-06 6 145148748 145148748 C T UTRN Missense_Mutation p.P3179S 0.34 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A8GI-06 6 145157547 145157547 C T UTRN Missense_Mutation p.S3312L 0.36 deleterious(0) possibly_damaging(0.589) TCGA-D3-A8GI-06 6 146262903 146262903 G A SHPRH Silent p.V782V 0.44 TCGA-D3-A8GI-06 6 149699968 149699968 C A TAB2 Missense_Mutation p.S306Y 0.25 tolerated(0.19) possibly_damaging(0.459) TCGA-D3-A8GI-06 6 149856830 149856830 G A PPIL4 Silent p.V122V 0.30 TCGA-D3-A8GI-06 6 149983017 149983017 G A LATS1 Nonsense_Mutation p.R1081* 0.40 TCGA-D3-A8GI-06 6 150290280 150290280 G A ULBP1 Missense_Mutation p.G137R 0.37 deleterious(0.04) probably_damaging(0.967) TCGA-D3-A8GI-06 6 150719358 150719358 C T IYD 3'UTR 0.38 TCGA-D3-A8GI-06 6 151151933 151151933 C T PLEKHG1 Silent p.F562F 0.37 TCGA-D3-A8GI-06 6 152652541 152652541 G A SYNE1 Missense_Mutation p.L4427F 0.32 probably_damaging(0.92) TCGA-D3-A8GI-06 6 152771869 152771869 C T SYNE1 Missense_Mutation p.D1096N 0.50 benign(0) TCGA-D3-A8GI-06 6 152804348 152804348 G A SYNE1 Missense_Mutation p.P408S 0.32 probably_damaging(0.983) TCGA-D3-A8GI-06 6 15497229 15497229 C T JARID2 Silent p.P591P 0.21 TCGA-D3-A8GI-06 6 155450436 155450436 C T TIAM2 Missense_Mutation p.P27S 0.41 tolerated_low_confidence(0.14) possibly_damaging(0.468) TCGA-D3-A8GI-06 6 155718063 155718063 T G NOX3 Missense_Mutation p.K538N 0.41 deleterious(0.02) possibly_damaging(0.828) TCGA-D3-A8GI-06 6 157743827 157743827 G A TMEM242 Silent p.F33F 0.36 TCGA-D3-A8GI-06 6 158093899 158093899 C T ZDHHC14 Silent p.L404L 0.33 TCGA-D3-A8GI-06 6 158502210 158502210 G A SYNJ2 Silent p.Q879Q 0.37 TCGA-D3-A8GI-06 6 158502211 158502211 G A SYNJ2 Missense_Mutation p.E880K 0.38 tolerated(0.06) possibly_damaging(0.874) TCGA-D3-A8GI-06 6 158502301 158502301 G A SYNJ2 Missense_Mutation p.D910N 0.30 tolerated(0.21) possibly_damaging(0.579) TCGA-D3-A8GI-06 6 158532434 158532434 G A SERAC1 Silent p.F643F 0.33 TCGA-D3-A8GI-06 6 158535908 158535908 G A SERAC1 Missense_Mutation p.P533S 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 159654529 159654529 G A FNDC1 Silent p.R995R 0.31 TCGA-D3-A8GI-06 6 160113639 160113639 C A SOD2 Intron 0.36 TCGA-D3-A8GI-06 6 160505189 160505189 C T IGF2R Missense_Mutation p.S2014F 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 6 160831795 160831795 C T SLC22A3 Missense_Mutation p.R298W 0.36 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 6 160898233 160898233 C T LPAL2 RNA 0.33 TCGA-D3-A8GI-06 6 161007524 161007524 G A LPA Silent p.P1362P 0.23 TCGA-D3-A8GI-06 6 161015075 161015075 T G LPA Missense_Mutation p.T1182P 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GI-06 6 161016452 161016452 C T LPA Missense_Mutation p.E1135K 0.31 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-D3-A8GI-06 6 161032619 161032619 G A LPA Missense_Mutation p.R860W 0.69 tolerated(0.19) probably_damaging(0.994) TCGA-D3-A8GI-06 6 161135891 161135891 G A PLG Missense_Mutation p.E205K 0.35 tolerated(0.38) benign(0.011) TCGA-D3-A8GI-06 6 165711496 165711496 G A C6orf118 Missense_Mutation p.A344V 0.52 deleterious(0.04) possibly_damaging(0.895) TCGA-D3-A8GI-06 6 166572002 166572002 C T T Missense_Mutation p.G370E 0.36 deleterious(0) possibly_damaging(0.461) TCGA-D3-A8GI-06 6 167570552 167570552 G A GPR31 Silent p.A256A 0.34 TCGA-D3-A8GI-06 6 167570553 167570553 G A GPR31 Missense_Mutation p.A256V 0.35 tolerated(0.88) benign(0.034) TCGA-D3-A8GI-06 6 167587408 167587408 G A TCP10L2 Silent p.G104G 0.27 TCGA-D3-A8GI-06 6 167590583 167590583 G A TCP10L2 Silent p.L153L 0.18 TCGA-D3-A8GI-06 6 167704933 167704933 A T UNC93A 5'UTR 0.19 TCGA-D3-A8GI-06 6 167708095 167708095 C T UNC93A Missense_Mutation p.L60F 0.42 tolerated(0.31) benign(0.1) TCGA-D3-A8GI-06 6 167719435 167719435 C T UNC93A Silent p.F291F 0.39 TCGA-D3-A8GI-06 6 167791482 167791482 C T TCP10 Silent p.L126L 0.15 TCGA-D3-A8GI-06 6 168434623 168434623 G A KIF25 Missense_Mutation p.G77R 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GI-06 6 168445589 168445589 C T KIF25 Silent p.F356F 0.29 TCGA-D3-A8GI-06 6 168467485 168467485 G A FRMD1 Silent p.F137F 0.44 TCGA-D3-A8GI-06 6 168479690 168479690 C T FRMD1 Missense_Mutation p.E29K 0.45 tolerated_low_confidence(0.61) benign(0.001) TCGA-D3-A8GI-06 6 169648626 169648626 C T THBS2 Silent p.V165V 0.30 TCGA-D3-A8GI-06 6 169648971 169648971 G A THBS2 Silent p.P50P 0.31 TCGA-D3-A8GI-06 6 170594205 170594205 A G DLL1 Missense_Mutation p.S351P 0.35 tolerated(0.22) possibly_damaging(0.811) TCGA-D3-A8GI-06 6 17764898 17764898 C T KIF13A Missense_Mutation p.D1621N 0.55 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-D3-A8GI-06 6 17850654 17850654 G A KIF13A Missense_Mutation p.S206F 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 21231213 21231213 C T CDKAL1 Silent p.S561S 0.20 TCGA-D3-A8GI-06 6 24134610 24134610 G A NRSN1 Missense_Mutation p.G19S 0.19 tolerated(0.45) benign(0.005) TCGA-D3-A8GI-06 6 24146036 24146036 C T NRSN1 Silent p.L150L 0.51 TCGA-D3-A8GI-06 6 24205394 24205394 G A DCDC2 Intron 0.34 TCGA-D3-A8GI-06 6 24301984 24301984 C T DCDC2 Missense_Mutation p.M172I 0.31 deleterious(0.01) possibly_damaging(0.803) TCGA-D3-A8GI-06 6 24448150 24448150 C T GPLD1 Missense_Mutation p.G545R 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 24533861 24533861 C T ALDH5A1 Missense_Mutation p.S523F 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 24563611 24563611 T A KIAA0319 Missense_Mutation p.K856M 0.12 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GI-06 6 24780904 24780904 C T GMNN Missense_Mutation p.P22L 0.21 deleterious(0.02) benign(0.26) TCGA-D3-A8GI-06 6 25726485 25726485 C T HIST1H2AA Missense_Mutation p.D91N 0.26 deleterious_low_confidence(0.03) benign(0.275) TCGA-D3-A8GI-06 6 25726731 25726731 C T HIST1H2AA Missense_Mutation p.G9R 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A8GI-06 6 25778216 25778216 C T SLC17A4 Missense_Mutation p.P444L 0.32 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GI-06 6 25916022 25916022 G A SLC17A2 Silent p.F335F 0.36 TCGA-D3-A8GI-06 6 26056112 26056112 G A HIST1H1C Missense_Mutation p.P182L 0.29 tolerated(0.28) unknown(0) TCGA-D3-A8GI-06 6 26247087 26247087 C T HIST1H4G Missense_Mutation p.R40Q 0.21 deleterious(0.04) probably_damaging(0.979) TCGA-D3-A8GI-06 6 26373616 26373616 G A BTN3A2 Silent p.K313K 0.24 TCGA-D3-A8GI-06 6 2689168 2689168 G A MYLK4 Silent p.A86A 0.22 TCGA-D3-A8GI-06 6 27419133 27419133 G A ZNF184 Silent p.F735F 0.23 TCGA-D3-A8GI-06 6 27834748 27834748 G A HIST1H1B Missense_Mutation p.T187I 0.23 tolerated(0.23) benign(0.184) TCGA-D3-A8GI-06 6 2785356 2785356 C T WRNIP1 Missense_Mutation p.P613L 0.32 deleterious(0.01) benign(0.102) TCGA-D3-A8GI-06 6 28121172 28121172 C T ZKSCAN8 Missense_Mutation p.H372Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 6 28200918 28200918 C T ZSCAN9 Missense_Mutation p.R434C 0.18 tolerated(0.07) probably_damaging(0.996) TCGA-D3-A8GI-06 6 28472185 28472185 C T GPX6 Missense_Mutation p.E184K 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 6 28539916 28539916 C T SCAND3 Nonsense_Mutation p.W1250* 0.32 TCGA-D3-A8GI-06 6 28540031 28540031 G A SCAND3 Missense_Mutation p.S1212L 0.20 tolerated_low_confidence(0.27) benign(0.05) TCGA-D3-A8GI-06 6 28540378 28540378 C T SCAND3 Silent p.V1096V 0.25 TCGA-D3-A8GI-06 6 28543624 28543624 C T SCAND3 Silent p.K286K 0.18 TCGA-D3-A8GI-06 6 2890577 2890577 C T SERPINB9 Silent p.K317K 0.29 TCGA-D3-A8GI-06 6 2890720 2890721 - A SERPINB9 Frame_Shift_Ins p.P270Sfs*4 0.17 TCGA-D3-A8GI-06 6 2896308 2896308 C T SERPINB9 Silent p.E95E 0.25 TCGA-D3-A8GI-06 6 28963475 28963475 C T ZNF311 Missense_Mutation p.R435Q 0.33 deleterious(0.01) benign(0.211) TCGA-D3-A8GI-06 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.26 TCGA-D3-A8GI-06 6 29055026 29055026 G A OR2B3 5'UTR 0.23 TCGA-D3-A8GI-06 6 29275257 29275257 C T OR14J1 Missense_Mutation p.S264F 0.21 deleterious(0.03) benign(0.17) TCGA-D3-A8GI-06 6 29323472 29323472 G A OR5V1 Silent p.P167P 0.12 TCGA-D3-A8GI-06 6 29323887 29323887 G A OR5V1 Missense_Mutation p.T29I 0.25 tolerated(0.19) benign(0.002) TCGA-D3-A8GI-06 6 29342450 29342450 G A OR12D3 Silent p.S205S 0.20 TCGA-D3-A8GI-06 6 29364620 29364620 C T OR12D2 Silent p.I48I 0.31 TCGA-D3-A8GI-06 6 29364875 29364875 C T OR12D2 Silent p.I133I 0.37 TCGA-D3-A8GI-06 6 30037087 30037087 C T PPP1R11 3'UTR 0.20 TCGA-D3-A8GI-06 6 30043390 30043390 T A RNF39 Missense_Mutation p.E59D 0.31 deleterious_low_confidence(0.02) benign(0.099) TCGA-D3-A8GI-06 6 30071551 30071551 G A TRIM31 Missense_Mutation p.S347L 0.25 tolerated(0.18) benign(0) TCGA-D3-A8GI-06 6 30073000 30073000 C T TRIM31 Silent p.R301R 0.27 TCGA-D3-A8GI-06 6 30104975 30104975 C T TRIM40 Silent p.P54P 0.33 TCGA-D3-A8GI-06 6 30131682 30131682 C T TRIM15 Missense_Mutation p.P74L 0.18 tolerated(0.05) benign(0.042) TCGA-D3-A8GI-06 6 30638637 30638637 G A DHX16 Missense_Mutation p.A180V 0.33 deleterious(0.04) unknown(0) TCGA-D3-A8GI-06 6 30682839 30682839 A C MDC1 Missense_Mutation p.S38R 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GI-06 6 30862413 30862413 C T DDR1 Missense_Mutation p.P493L 0.33 tolerated(0.28) benign(0.094) TCGA-D3-A8GI-06 6 30894013 30894013 C T VARS2 3'UTR 0.38 TCGA-D3-A8GI-06 6 30954608 30954608 C T MUC21 Missense_Mutation p.S219F 0.29 deleterious(0) unknown(0) TCGA-D3-A8GI-06 6 30955387 30955387 G A MUC21 Missense_Mutation p.E479K 0.21 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 6 31084600 31084600 G A CDSN Silent p.A264A 0.36 TCGA-D3-A8GI-06 6 31130390 31130390 G A TCF19 Missense_Mutation p.G312S 0.25 tolerated(0.72) probably_damaging(0.982) TCGA-D3-A8GI-06 6 31474804 31474804 C T MICB Missense_Mutation p.P207S 0.09 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 6 31508334 31508334 G A DDX39B 5'UTR 0.20 TCGA-D3-A8GI-06 6 31541203 31541203 G A LTA Silent p.G117G 0.56 TCGA-D3-A8GI-06 6 31541207 31541207 G A LTA Missense_Mutation p.A119T 0.24 deleterious(0.01) benign(0.04) TCGA-D3-A8GI-06 6 31594923 31594923 C T PRRC2A Missense_Mutation p.P413L 0.45 unknown(0) TCGA-D3-A8GI-06 6 31637244 31637244 C T CSNK2B-LY6G5B-1181 Silent p.P172P 0.33 TCGA-D3-A8GI-06 6 31675546 31675546 G A LY6G6F Missense_Mutation p.D122N 0.33 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GI-06 6 31727726 31727726 C T MSH5 Silent p.V553V 0.32 TCGA-D3-A8GI-06 6 31731900 31731900 G A SAPCD1 Silent p.K105K 0.18 TCGA-D3-A8GI-06 6 31731901 31731901 G A SAPCD1 Missense_Mutation p.V106M 0.18 tolerated(0.08) benign(0.249) TCGA-D3-A8GI-06 6 31743892 31743892 C T VWA7 Missense_Mutation p.R121K 0.22 tolerated(0.61) benign(0.005) TCGA-D3-A8GI-06 6 31750197 31750197 G A VARS Missense_Mutation p.P672L 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 31829077 31829077 G A NEU1 Missense_Mutation p.S168F 0.25 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 6 31857026 31857026 G A EHMT2 Missense_Mutation p.P365S 0.54 tolerated(0.13) benign(0.063) TCGA-D3-A8GI-06 6 31902167 31902167 G A C2 Intron 0.26 TCGA-D3-A8GI-06 6 31940134 31940134 C T STK19 Silent p.F92F 0.25 TCGA-D3-A8GI-06 6 31997055 31997055 C T C4B Missense_Mutation p.P1206S 0.22 tolerated(0.54) benign(0.004) TCGA-D3-A8GI-06 6 32015590 32015590 G A TNXB 5'Flank 0.30 TCGA-D3-A8GI-06 6 32017225 32017225 G A TNXB 5'Flank 0.26 TCGA-D3-A8GI-06 6 32046902 32046902 C T RNA5SP206 5'Flank 0.27 TCGA-D3-A8GI-06 6 32049391 32049391 C T RNA5SP206 5'Flank 0.20 TCGA-D3-A8GI-06 6 32053580 32053580 C T TNXB Missense_Mutation p.G1032E 0.37 probably_damaging(0.999) TCGA-D3-A8GI-06 6 32122261 32122261 C T PPT2 Intron 0.29 TCGA-D3-A8GI-06 6 32159533 32159533 G A GPSM3 Missense_Mutation p.P100S 0.26 tolerated(0.23) probably_damaging(0.968) TCGA-D3-A8GI-06 6 32166440 32166440 C T NOTCH4 Missense_Mutation p.E1535K 0.27 tolerated(0.11) probably_damaging(0.993) TCGA-D3-A8GI-06 6 32190299 32190299 G A NOTCH4 Missense_Mutation p.P147L 0.23 tolerated(0.37) possibly_damaging(0.87) TCGA-D3-A8GI-06 6 32190843 32190843 G A NOTCH4 Missense_Mutation p.P32S 0.27 tolerated(0.14) benign(0.124) TCGA-D3-A8GI-06 6 32260651 32260651 G A C6orf10 3'UTR 0.42 TCGA-D3-A8GI-06 6 32260940 32260940 C T C6orf10 Missense_Mutation p.E504K 0.30 tolerated(0.38) probably_damaging(0.981) TCGA-D3-A8GI-06 6 32261380 32261380 C T C6orf10 Missense_Mutation p.G357E 0.18 tolerated(1) possibly_damaging(0.824) TCGA-D3-A8GI-06 6 32261619 32261619 T A C6orf10 Missense_Mutation p.E277D 0.27 tolerated(0.17) probably_damaging(0.971) TCGA-D3-A8GI-06 6 32609835 32609835 C T HLA-DQA1 Missense_Mutation p.P140S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 32713654 32713654 C T HLA-DQA2 Missense_Mutation p.P140S 0.10 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 6 32810020 32810020 C T PSMB8 Missense_Mutation p.G143E 0.49 deleterious(0.03) possibly_damaging(0.741) TCGA-D3-A8GI-06 6 32905186 32905186 C T HLA-DMB Missense_Mutation p.E129K 0.23 tolerated(0.12) possibly_damaging(0.535) TCGA-D3-A8GI-06 6 32940577 32940577 C T BRD2 5'UTR 0.28 TCGA-D3-A8GI-06 6 33036562 33036562 C T HLA-DPA1 Silent p.Q216Q 0.22 TCGA-D3-A8GI-06 6 33145935 33145935 C T COL11A2 Missense_Mutation p.G530S 0.28 probably_damaging(0.931) TCGA-D3-A8GI-06 6 33255407 33255407 C T WDR46 Missense_Mutation p.A238T 0.17 tolerated(0.78) benign(0.184) TCGA-D3-A8GI-06 6 33283975 33283975 G A ZBTB22 Missense_Mutation p.P240L 0.26 tolerated(0.07) benign(0.22) TCGA-D3-A8GI-06 6 33384712 33384712 A T CUTA Nonsense_Mutation p.L152* 0.23 TCGA-D3-A8GI-06 6 33740516 33740516 G A LEMD2 Silent p.F467F 0.26 TCGA-D3-A8GI-06 6 34004075 34004075 G A GRM4 Silent p.F604F 0.24 TCGA-D3-A8GI-06 6 34004119 34004119 G C GRM4 Missense_Mutation p.L590V 0.34 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 6 34506210 34506210 G A SPDEF Silent p.D283D 0.23 TCGA-D3-A8GI-06 6 34574495 34574495 G A C6orf106 Missense_Mutation p.S233F 0.24 tolerated(0.1) possibly_damaging(0.569) TCGA-D3-A8GI-06 6 35103960 35103960 C T TCP11 Missense_Mutation p.E67K 0.18 tolerated(0.56) benign(0.022) TCGA-D3-A8GI-06 6 35210953 35210953 G A SCUBE3 Missense_Mutation p.E617K 0.19 tolerated(1) benign(0.024) TCGA-D3-A8GI-06 6 35280207 35280207 C T DEF6 Silent p.F184F 0.24 TCGA-D3-A8GI-06 6 35392524 35392524 C T PPARD Missense_Mutation p.A349V 0.33 deleterious(0) possibly_damaging(0.85) TCGA-D3-A8GI-06 6 35392525 35392525 C T PPARD Silent p.A349A 0.33 TCGA-D3-A8GI-06 6 35425367 35425367 C T FANCE Missense_Mutation p.T297I 0.26 deleterious(0.03) possibly_damaging(0.733) TCGA-D3-A8GI-06 6 35434179 35434179 T A FANCE 3'UTR 0.43 TCGA-D3-A8GI-06 6 35479542 35479542 G A TULP1 Missense_Mutation p.P78S 0.38 tolerated_low_confidence(0.11) benign(0.015) TCGA-D3-A8GI-06 6 35705064 35705064 C G ARMC12 Missense_Mutation p.P60R 0.15 deleterious(0.01) possibly_damaging(0.626) TCGA-D3-A8GI-06 6 35716531 35716531 G A ARMC12 Missense_Mutation p.E330K 0.31 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A8GI-06 6 35782406 35782406 G A LHFPL5 Missense_Mutation p.G166S 0.27 tolerated(0.12) benign(0.243) TCGA-D3-A8GI-06 6 35912068 35912068 T A SLC26A8 Missense_Mutation p.K841I 0.19 deleterious(0) benign(0.391) TCGA-D3-A8GI-06 6 36107105 36107105 C T MAPK13 Silent p.P351P 0.55 TCGA-D3-A8GI-06 6 36261990 36261990 G A PNPLA1 Silent p.T176T 0.20 TCGA-D3-A8GI-06 6 36568934 36568934 C T SRSF3 Missense_Mutation p.P116L 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GI-06 6 36652051 36652051 C T CDKN1A Missense_Mutation p.P58L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 36742739 36742739 G A CPNE5 Missense_Mutation p.R246W 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 36766010 36766010 C T CPNE5 Silent p.L112L 0.33 TCGA-D3-A8GI-06 6 38561749 38561749 G A BTBD9 Silent p.S180S 0.25 TCGA-D3-A8GI-06 6 38820533 38820533 C T DNAH8 Missense_Mutation p.R1627C 0.32 possibly_damaging(0.893) TCGA-D3-A8GI-06 6 38919226 38919226 G A DNAH8 Silent p.L3910L 0.29 TCGA-D3-A8GI-06 6 39290134 39290134 C T KCNK16 Silent p.L61L 0.27 TCGA-D3-A8GI-06 6 39881106 39881106 C T MOCS1 Missense_Mutation p.G238S 0.12 tolerated(0.06) benign(0.026) TCGA-D3-A8GI-06 6 4032799 4032799 C T PRPF4B Missense_Mutation p.P350S 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GI-06 6 40359806 40359806 G A LRFN2 Missense_Mutation p.S749L 0.43 deleterious(0.03) benign(0.057) TCGA-D3-A8GI-06 6 41000854 41000854 C T UNC5CL Missense_Mutation p.G240R 0.20 tolerated(0.06) benign(0.155) TCGA-D3-A8GI-06 6 41051902 41051902 C T NFYA Missense_Mutation p.P94S 0.17 deleterious(0.03) unknown(0) TCGA-D3-A8GI-06 6 41126689 41126689 C T TREM2 Missense_Mutation p.G200R 0.31 tolerated(0.9) benign(0.012) TCGA-D3-A8GI-06 6 41166049 41166049 G A TREML2 Silent p.I58I 0.27 TCGA-D3-A8GI-06 6 41197274 41197274 C T TREML4 Missense_Mutation p.P137L 0.27 tolerated(0.05) benign(0.168) TCGA-D3-A8GI-06 6 41250485 41250485 G A TREM1 Silent p.L18L 0.26 TCGA-D3-A8GI-06 6 41303994 41303994 G A NCR2 Silent p.T74T 0.29 TCGA-D3-A8GI-06 6 41304067 41304067 C T NCR2 Silent p.L99L 0.36 TCGA-D3-A8GI-06 6 41708268 41708268 G A PGC Missense_Mutation p.P243L 0.24 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GI-06 6 41710215 41710215 G C PGC Missense_Mutation p.Q154E 0.24 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 6 41739004 41739004 C T FRS3 Missense_Mutation p.E278K 0.22 tolerated(0.39) benign(0.421) TCGA-D3-A8GI-06 6 42036319 42036319 G A TAF8 Missense_Mutation p.E252K 0.28 tolerated(0.2) benign(0.077) TCGA-D3-A8GI-06 6 42182050 42182050 C T MRPS10 Silent p.K27K 0.28 TCGA-D3-A8GI-06 6 42211019 42211019 C T TRERF1 Silent p.R942R 0.35 TCGA-D3-A8GI-06 6 42211029 42211029 C T TRERF1 Missense_Mutation p.R939Q 0.35 deleterious(0.01) benign(0.238) TCGA-D3-A8GI-06 6 42214279 42214279 G A TRERF1 Missense_Mutation p.S887L 0.60 deleterious(0) benign(0.32) TCGA-D3-A8GI-06 6 42227335 42227335 G A TRERF1 Missense_Mutation p.P671S 0.25 tolerated(0.44) possibly_damaging(0.641) TCGA-D3-A8GI-06 6 42231072 42231072 C T TRERF1 Missense_Mutation p.E624K 0.30 tolerated(0.09) benign(0.305) TCGA-D3-A8GI-06 6 42853726 42853726 A G RPL7L1 Missense_Mutation p.K146R 0.63 deleterious(0) benign(0.278) TCGA-D3-A8GI-06 6 43100212 43100212 G A PTK7 Missense_Mutation p.E347K 0.23 tolerated(0.34) benign(0.403) TCGA-D3-A8GI-06 6 43155766 43155766 C T CUL9 Missense_Mutation p.P633S 0.58 deleterious(0.04) benign(0.031) TCGA-D3-A8GI-06 6 43409684 43409684 C T ABCC10 Missense_Mutation p.R738C 0.70 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GI-06 6 44255631 44255631 G A TCTE1 5'UTR 0.33 TCGA-D3-A8GI-06 6 44360536 44360536 C T CDC5L Silent p.A94A 0.26 TCGA-D3-A8GI-06 6 45917000 45917000 G A CLIC5 Missense_Mutation p.P257S 0.28 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GI-06 6 45922973 45922973 G A CLIC5 Silent p.I183I 0.65 TCGA-D3-A8GI-06 6 46626695 46626695 C T SLC25A27 Intron 0.55 TCGA-D3-A8GI-06 6 46787400 46787400 G A MEP1A Missense_Mutation p.R172Q 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 46827234 46827234 G A GPR116 Silent p.I802I 0.28 TCGA-D3-A8GI-06 6 46976845 46976845 C T GPR110 Missense_Mutation p.E776K 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-D3-A8GI-06 6 46977622 46977622 C T GPR110 Missense_Mutation p.E517K 0.60 tolerated(0.06) possibly_damaging(0.849) TCGA-D3-A8GI-06 6 46977878 46977878 C T GPR110 Nonsense_Mutation p.W431* 0.34 TCGA-D3-A8GI-06 6 46979855 46979855 C T GPR110 Missense_Mutation p.R335Q 0.14 tolerated(1) benign(0) TCGA-D3-A8GI-06 6 47563658 47563658 G A CD2AP Silent p.K390K 0.27 TCGA-D3-A8GI-06 6 47681686 47681686 G A GPR115 Silent p.V235V 0.30 TCGA-D3-A8GI-06 6 47682682 47682682 C T GPR115 Silent p.F567F 0.27 TCGA-D3-A8GI-06 6 47846990 47846990 C T PTCHD4 Nonsense_Mutation p.W530* 0.67 TCGA-D3-A8GI-06 6 47976386 47976386 G A PTCHD4 Silent p.I297I 0.27 TCGA-D3-A8GI-06 6 49423848 49423848 C T MUT Missense_Mutation p.E286K 0.26 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-D3-A8GI-06 6 49604462 49604462 A T RHAG Missense_Mutation p.L22I 0.23 tolerated(0.46) benign(0.052) TCGA-D3-A8GI-06 6 49660428 49660428 C T CRISP2 3'UTR 0.27 TCGA-D3-A8GI-06 6 49660614 49660614 C T CRISP2 Splice_Site p.X202_splice 0.16 TCGA-D3-A8GI-06 6 49667538 49667538 C T CRISP2 Missense_Mutation p.D84N 0.27 tolerated(0.33) benign(0.004) TCGA-D3-A8GI-06 6 49700936 49700936 A C CRISP3 Missense_Mutation p.Y188D 0.21 deleterious(0) possibly_damaging(0.729) TCGA-D3-A8GI-06 6 49753969 49753969 C T PGK2 Nonsense_Mutation p.W311* 0.30 TCGA-D3-A8GI-06 6 49754126 49754126 C T PGK2 Missense_Mutation p.D259N 0.25 deleterious(0) possibly_damaging(0.886) TCGA-D3-A8GI-06 6 49754377 49754377 G A PGK2 Missense_Mutation p.S175F 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 49803097 49803097 C T CRISP1 Missense_Mutation p.G228R 0.23 deleterious(0.04) probably_damaging(0.983) TCGA-D3-A8GI-06 6 49803098 49803098 C T CRISP1 Silent p.L227L 0.23 TCGA-D3-A8GI-06 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.18 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-D3-A8GI-06 6 50011342 50011342 G A DEFB112 Silent p.I96I 0.18 TCGA-D3-A8GI-06 6 50011417 50011417 C T DEFB112 Silent p.R71R 0.23 TCGA-D3-A8GI-06 6 51483964 51483964 G A PKHD1 Missense_Mutation p.S4047F 0.25 deleterious_low_confidence(0.01) benign(0.23) TCGA-D3-A8GI-06 6 51484113 51484113 C T PKHD1 Silent p.G3997G 0.40 TCGA-D3-A8GI-06 6 51523863 51523863 C T PKHD1 Silent p.Q3687Q 0.24 TCGA-D3-A8GI-06 6 51524058 51524058 G A PKHD1 Silent p.C3622C 0.23 TCGA-D3-A8GI-06 6 51611628 51611628 G A PKHD1 Silent p.L3297L 0.34 TCGA-D3-A8GI-06 6 51907774 51907774 G A PKHD1 Missense_Mutation p.R994W 0.30 tolerated(0.06) benign(0.022) TCGA-D3-A8GI-06 6 51913400 51913400 C T PKHD1 Missense_Mutation p.G766E 0.22 tolerated(0.19) benign(0.049) TCGA-D3-A8GI-06 6 51915027 51915027 C T PKHD1 Missense_Mutation p.G736E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 51917904 51917904 C T PKHD1 Missense_Mutation p.E704K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 6 52659022 52659022 C T GSTA1 Missense_Mutation p.M105I 0.34 tolerated(0.06) possibly_damaging(0.517) TCGA-D3-A8GI-06 6 52762686 52762686 C T GSTA3 Silent p.V161V 0.25 TCGA-D3-A8GI-06 6 52876655 52876655 G A ICK Silent p.P468P 0.33 TCGA-D3-A8GI-06 6 52902771 52902771 G A ICK Missense_Mutation p.S41F 0.20 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GI-06 6 53986247 53986247 C T MLIP Silent p.V22V 0.37 TCGA-D3-A8GI-06 6 53989384 53989384 C T MLIP Silent p.F111F 0.21 TCGA-D3-A8GI-06 6 54025584 54025584 C T MLIP Missense_Mutation p.S294F 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-D3-A8GI-06 6 54066921 54066921 C T MLIP Missense_Mutation p.R335C 0.27 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 6 54095683 54095683 C T MLIP Missense_Mutation p.H429Y 0.26 tolerated(0.6) possibly_damaging(0.713) TCGA-D3-A8GI-06 6 54173435 54173435 G A TINAG Silent p.V29V 0.15 TCGA-D3-A8GI-06 6 54254746 54254746 G A TINAG 3'UTR 0.23 TCGA-D3-A8GI-06 6 54804572 54804572 C T FAM83B Missense_Mutation p.S268F 0.21 deleterious(0) possibly_damaging(0.836) TCGA-D3-A8GI-06 6 54804757 54804757 C T FAM83B Missense_Mutation p.H330Y 0.29 deleterious(0) benign(0.408) TCGA-D3-A8GI-06 6 54804792 54804792 G A FAM83B Silent p.G341G 0.33 TCGA-D3-A8GI-06 6 54805208 54805208 G A FAM83B Missense_Mutation p.R480Q 0.32 deleterious(0.03) possibly_damaging(0.55) TCGA-D3-A8GI-06 6 54805923 54805923 G A FAM83B Silent p.E718E 0.30 TCGA-D3-A8GI-06 6 55039452 55039452 G A HCRTR2 Missense_Mutation p.E23K 0.20 tolerated(0.8) benign(0.006) TCGA-D3-A8GI-06 6 55039535 55039535 G A HCRTR2 Silent p.P50P 0.66 TCGA-D3-A8GI-06 6 55145130 55145130 G A HCRTR2 Silent p.G331G 0.18 TCGA-D3-A8GI-06 6 55216368 55216368 G A GFRAL Missense_Mutation p.D230N 0.32 tolerated(0.5) probably_damaging(0.914) TCGA-D3-A8GI-06 6 55441876 55441876 C T HMGCLL1 Nonsense_Mutation p.W66* 0.38 TCGA-D3-A8GI-06 6 55922423 55922423 C T COL21A1 3'UTR 0.24 TCGA-D3-A8GI-06 6 55922574 55922574 C T COL21A1 Missense_Mutation p.G919R 0.21 deleterious(0) unknown(0) TCGA-D3-A8GI-06 6 56484408 56484408 G A DST Intron 0.57 TCGA-D3-A8GI-06 6 56506756 56506756 T C DST Silent p.Q135Q 0.27 TCGA-D3-A8GI-06 6 572626 572626 G A EXOC2 Missense_Mutation p.P446L 0.62 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A8GI-06 6 576766 576766 G A EXOC2 Nonsense_Mutation p.R437* 0.59 TCGA-D3-A8GI-06 6 6266969 6266969 C T F13A1 Nonsense_Mutation p.W131* 0.59 TCGA-D3-A8GI-06 6 6266970 6266970 C T F13A1 Nonsense_Mutation p.W131* 0.58 TCGA-D3-A8GI-06 6 63990359 63990359 C T LGSN Missense_Mutation p.R366Q 0.43 tolerated(0.09) possibly_damaging(0.608) TCGA-D3-A8GI-06 6 63995609 63995609 A G LGSN Silent p.S71S 0.49 TCGA-D3-A8GI-06 6 656473 656473 G A HUS1B Missense_Mutation p.R158C 0.30 tolerated(0.09) benign(0.012) TCGA-D3-A8GI-06 6 69653833 69653833 C T BAI3 Missense_Mutation p.P381L 0.31 deleterious(0.04) benign(0.025) TCGA-D3-A8GI-06 6 70037749 70037749 C T BAI3 Silent p.F1001F 0.25 TCGA-D3-A8GI-06 6 70037774 70037774 G A BAI3 Missense_Mutation p.D1010N 0.21 tolerated(0.24) benign(0.023) TCGA-D3-A8GI-06 6 70037777 70037777 C T BAI3 Missense_Mutation p.H1011Y 0.55 deleterious(0.01) benign(0.212) TCGA-D3-A8GI-06 6 70071078 70071078 G A BAI3 Missense_Mutation p.E1305K 0.32 deleterious(0.04) possibly_damaging(0.88) TCGA-D3-A8GI-06 6 70744158 70744158 C T COL19A1 Missense_Mutation p.P368S 0.61 tolerated(0.34) unknown(0) TCGA-D3-A8GI-06 6 70897847 70897847 G A COL19A1 Missense_Mutation p.M975I 0.33 tolerated(0.41) benign(0.03) TCGA-D3-A8GI-06 6 70926544 70926544 C T COL9A1 3'UTR 0.37 TCGA-D3-A8GI-06 6 70944603 70944603 C T COL9A1 Missense_Mutation p.G718E 0.42 probably_damaging(0.996) TCGA-D3-A8GI-06 6 70964186 70964186 C T COL9A1 Missense_Mutation p.G571E 0.33 probably_damaging(1) TCGA-D3-A8GI-06 6 71003887 71003887 G A COL9A1 Missense_Mutation p.P227S 0.31 unknown(0) TCGA-D3-A8GI-06 6 71004082 71004082 C T COL9A1 Missense_Mutation p.G162R 0.31 unknown(0) TCGA-D3-A8GI-06 6 71004139 71004139 C T COL9A1 Missense_Mutation p.G143S 0.44 unknown(0) TCGA-D3-A8GI-06 6 71012772 71012772 G A COL9A1 5'UTR 0.30 TCGA-D3-A8GI-06 6 71195871 71195871 C T FAM135A Intron 0.15 TCGA-D3-A8GI-06 6 71233732 71233732 C T FAM135A Missense_Mutation p.P389L 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 71238059 71238059 C T FAM135A Missense_Mutation p.P1227S 0.33 tolerated(0.48) benign(0.023) TCGA-D3-A8GI-06 6 71298362 71298362 C T C6orf57 Missense_Mutation p.P88S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 72596723 72596723 G A RIMS1 5'Flank 0.48 TCGA-D3-A8GI-06 6 72806683 72806683 G A RIMS1 Missense_Mutation p.E93K 0.25 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GI-06 6 72806797 72806797 C T RIMS1 Missense_Mutation p.L131F 0.34 deleterious(0.02) possibly_damaging(0.609) TCGA-D3-A8GI-06 6 73023297 73023297 C T RIMS1 Missense_Mutation p.S1351F 0.36 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 6 7373626 7373626 C T CAGE1 Missense_Mutation p.E476K 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-D3-A8GI-06 6 73787081 73787081 C T KCNQ5 Missense_Mutation p.S218F 0.24 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GI-06 6 73787521 73787521 C T KCNQ5 Missense_Mutation p.L277F 0.27 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GI-06 6 73919691 73919691 C T RP11-257K9.8 3'UTR 0.48 TCGA-D3-A8GI-06 6 74063736 74063736 G A DPPA5 Silent p.I44I 0.36 TCGA-D3-A8GI-06 6 74073582 74073582 G A KHDC3L Silent p.%3D 0.34 TCGA-D3-A8GI-06 6 74079367 74079367 A G OOEP Missense_Mutation p.L50S 0.39 deleterious(0.05) possibly_damaging(0.629) TCGA-D3-A8GI-06 6 74104616 74104616 C T DDX43 5'UTR 0.31 TCGA-D3-A8GI-06 6 74124358 74124358 C T DDX43 Missense_Mutation p.P565L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 74528229 74528229 C T CD109 Missense_Mutation p.H1344Y 0.39 tolerated(0.1) benign(0.045) TCGA-D3-A8GI-06 6 7579510 7579510 G A DSP Silent p.L1029L 0.17 TCGA-D3-A8GI-06 6 75822990 75822990 C T COL12A1 Missense_Mutation p.R2627K 0.32 benign(0.031) TCGA-D3-A8GI-06 6 7583128 7583128 T A DSP Missense_Mutation p.I1878N 0.20 possibly_damaging(0.534) TCGA-D3-A8GI-06 6 75840629 75840629 C T COL12A1 Silent p.V2002V 0.33 TCGA-D3-A8GI-06 6 76024332 76024332 C T FILIP1 Missense_Mutation p.E406K 0.41 deleterious(0.01) benign(0.419) TCGA-D3-A8GI-06 6 76072469 76072469 C T FILIP1 Silent p.P147P 0.31 TCGA-D3-A8GI-06 6 7609142 7609142 C T SNRNP48 3'UTR 0.37 TCGA-D3-A8GI-06 6 76596679 76596679 A G MYO6 Missense_Mutation p.I876V 0.62 tolerated(0.43) unknown(0) TCGA-D3-A8GI-06 6 78173114 78173114 C T HTR1B Missense_Mutation p.E3K 0.45 tolerated_low_confidence(0.41) benign(0.003) TCGA-D3-A8GI-06 6 7862645 7862645 C T BMP6 Missense_Mutation p.T373I 0.33 tolerated(0.47) benign(0.007) TCGA-D3-A8GI-06 6 80196841 80196841 G A LCA5 Silent p.F658F 0.33 TCGA-D3-A8GI-06 6 80626259 80626259 C T ELOVL4 3'UTR 0.29 TCGA-D3-A8GI-06 6 80745063 80745063 C T TTK Missense_Mutation p.S618F 0.38 deleterious(0.02) benign(0.063) TCGA-D3-A8GI-06 6 83921558 83921558 G A ME1 3'UTR 0.33 TCGA-D3-A8GI-06 6 83949268 83949268 C T ME1 Missense_Mutation p.G301E 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 6 84233400 84233400 T A PRSS35 Missense_Mutation p.D80E 0.34 tolerated(0.95) benign(0.002) TCGA-D3-A8GI-06 6 84375296 84375296 C T SNAP91 Silent p.L45L 0.29 TCGA-D3-A8GI-06 6 84772652 84772652 C T MRAP2 Silent p.F56F 0.36 TCGA-D3-A8GI-06 6 84798877 84798877 G A MRAP2 Missense_Mutation p.E99K 0.29 tolerated(0.14) benign(0.254) TCGA-D3-A8GI-06 6 89554076 89554076 C T RNGTT Silent p.K423K 0.32 TCGA-D3-A8GI-06 6 89554233 89554233 G A RNGTT Missense_Mutation p.P371L 0.37 deleterious(0.05) benign(0.104) TCGA-D3-A8GI-06 6 89563427 89563427 G A RNGTT Missense_Mutation p.S318L 0.40 deleterious(0.01) possibly_damaging(0.664) TCGA-D3-A8GI-06 6 89907846 89907846 G A GABRR1 Silent p.V155V 0.32 TCGA-D3-A8GI-06 6 89977487 89977487 G A GABRR2 Missense_Mutation p.S216F 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 90402402 90402402 G A MDN1 Silent p.F3449F 0.48 TCGA-D3-A8GI-06 6 91263228 91263228 A C MAP3K7 Missense_Mutation p.F229V 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 6 93953163 93953163 C T EPHA7 Missense_Mutation p.G993E 0.37 tolerated(0.29) possibly_damaging(0.558) TCGA-D3-A8GI-06 6 93967893 93967893 G A EPHA7 Silent p.D678D 0.31 TCGA-D3-A8GI-06 6 94124453 94124453 C T EPHA7 Missense_Mutation p.E44K 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 6 96054138 96054138 C T MANEA Missense_Mutation p.P416S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 6 96651097 96651097 C T FUT9 Silent p.F22F 0.34 TCGA-D3-A8GI-06 6 96651433 96651433 G A FUT9 Missense_Mutation p.M134I 0.24 tolerated(0.17) benign(0.261) TCGA-D3-A8GI-06 6 96973219 96973219 T A UFL1 Missense_Mutation p.I100N 0.35 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GI-06 6 97247291 97247291 A G GPR63 Missense_Mutation p.V106A 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 6 97247428 97247428 G A GPR63 Silent p.T60T 0.42 TCGA-D3-A8GI-06 6 97562139 97562139 C T KLHL32 Missense_Mutation p.R370C 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 100054443 100054443 G A C7orf61 Nonsense_Mutation p.R185* 0.38 TCGA-D3-A8GI-06 7 100054444 100054444 G A C7orf61 Silent p.V184V 0.38 TCGA-D3-A8GI-06 7 100084729 100084729 C T NYAP1 Silent p.P118P 0.41 TCGA-D3-A8GI-06 7 100085911 100085911 G A NYAP1 Silent p.G189G 0.29 TCGA-D3-A8GI-06 7 100172703 100172703 G A LRCH4 3'UTR 0.38 TCGA-D3-A8GI-06 7 100320425 100320425 C T EPO Missense_Mutation p.L129F 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 100349593 100349593 C T ZAN Missense_Mutation p.P622L 0.40 probably_damaging(0.958) TCGA-D3-A8GI-06 7 100349741 100349741 C T ZAN Silent p.S671S 0.51 TCGA-D3-A8GI-06 7 100365597 100365597 C T ZAN Silent p.V1668V 0.24 TCGA-D3-A8GI-06 7 100391443 100391443 C T ZAN Intron 0.55 TCGA-D3-A8GI-06 7 100391800 100391800 G A ZAN Intron 0.54 TCGA-D3-A8GI-06 7 100606735 100606735 C T MUC3A Intron 0.26 TCGA-D3-A8GI-06 7 100678588 100678588 C T MUC17 Silent p.T1297T 0.35 TCGA-D3-A8GI-06 7 100678701 100678701 G A MUC17 Missense_Mutation p.G1335E 0.36 unknown(0) TCGA-D3-A8GI-06 7 100681640 100681640 G A MUC17 Missense_Mutation p.E2315K 0.48 unknown(0) TCGA-D3-A8GI-06 7 100682427 100682427 G A MUC17 Missense_Mutation p.R2577K 0.48 benign(0.012) TCGA-D3-A8GI-06 7 100683366 100683366 C T MUC17 Missense_Mutation p.S2890L 0.38 possibly_damaging(0.829) TCGA-D3-A8GI-06 7 100685141 100685141 C T MUC17 Missense_Mutation p.P3482S 0.45 benign(0.235) TCGA-D3-A8GI-06 7 100685723 100685723 C T MUC17 Missense_Mutation p.P3676S 0.48 benign(0) TCGA-D3-A8GI-06 7 100686247 100686247 C T MUC17 Silent p.T3850T 0.46 TCGA-D3-A8GI-06 7 100686389 100686389 C T MUC17 Missense_Mutation p.P3898S 0.38 benign(0) TCGA-D3-A8GI-06 7 100686612 100686612 A G MUC17 Missense_Mutation p.N3972S 0.44 benign(0) TCGA-D3-A8GI-06 7 100693803 100693803 G A MUC17 Missense_Mutation p.R4254K 0.36 unknown(0) TCGA-D3-A8GI-06 7 100701286 100701286 C T MUC17 Silent p.I4481I 0.36 TCGA-D3-A8GI-06 7 100731562 100731562 C T TRIM56 Silent p.S323S 0.43 TCGA-D3-A8GI-06 7 100732085 100732085 C T TRIM56 Missense_Mutation p.P498S 0.49 tolerated(0.43) possibly_damaging(0.504) TCGA-D3-A8GI-06 7 100732221 100732221 C T TRIM56 Missense_Mutation p.T543I 0.35 tolerated(0.16) benign(0.046) TCGA-D3-A8GI-06 7 100887301 100887301 G A FIS1 Silent p.I55I 0.33 TCGA-D3-A8GI-06 7 101877390 101877390 C T CUX1 Silent p.L1175L 0.53 TCGA-D3-A8GI-06 7 101877391 101877391 C T CUX1 Missense_Mutation p.L1176F 0.51 deleterious(0) unknown(0) TCGA-D3-A8GI-06 7 101916738 101916738 C T CUX1 Nonsense_Mutation p.Q451* 0.50 TCGA-D3-A8GI-06 7 1026369 1026369 G A CYP2W1 Missense_Mutation p.R252K 0.56 tolerated(0.54) benign(0.062) TCGA-D3-A8GI-06 7 102739006 102739006 C T ARMC10 3'UTR 0.11 TCGA-D3-A8GI-06 7 102967036 102967036 C T DNAJC2 Missense_Mutation p.D176N 0.36 tolerated(0.52) benign(0.007) TCGA-D3-A8GI-06 7 103113231 103113231 G A RELN 3'UTR 0.49 TCGA-D3-A8GI-06 7 103138349 103138349 G A RELN Silent p.I2956I 0.48 TCGA-D3-A8GI-06 7 103151362 103151362 C T RELN Missense_Mutation p.G2737E 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-D3-A8GI-06 7 103155825 103155825 C T RELN Silent p.Q2642Q 0.58 TCGA-D3-A8GI-06 7 103207156 103207156 G A RELN Nonsense_Mutation p.R1547* 0.36 TCGA-D3-A8GI-06 7 103216139 103216139 G A RELN Nonsense_Mutation p.R1387* 0.53 TCGA-D3-A8GI-06 7 103216140 103216140 G A RELN Silent p.F1386F 0.53 TCGA-D3-A8GI-06 7 103301840 103301840 C T RELN Missense_Mutation p.R475K 0.31 tolerated(0.18) probably_damaging(0.965) TCGA-D3-A8GI-06 7 105660881 105660881 C T CDHR3 Silent p.F572F 0.20 TCGA-D3-A8GI-06 7 106508605 106508605 C T PIK3CG Missense_Mutation p.P200L 0.53 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A8GI-06 7 106768678 106768678 G A PRKAR2B Missense_Mutation p.D140N 0.46 deleterious(0.01) benign(0.078) TCGA-D3-A8GI-06 7 107204338 107204338 C T COG5 Missense_Mutation p.E33K 0.25 deleterious_low_confidence(0) benign(0.002) TCGA-D3-A8GI-06 7 107399032 107399032 C T CBLL1 Silent p.V295V 0.25 TCGA-D3-A8GI-06 7 107671415 107671415 G A LAMB4 Nonsense_Mutation p.Q1610* 0.50 TCGA-D3-A8GI-06 7 107706207 107706207 C T LAMB4 Missense_Mutation p.G946S 0.36 deleterious(0.03) possibly_damaging(0.8) TCGA-D3-A8GI-06 7 108155425 108155425 G A PNPLA8 Missense_Mutation p.P171S 0.39 tolerated_low_confidence(0.45) benign(0.001) TCGA-D3-A8GI-06 7 108524165 108524165 G A C7orf66 Missense_Mutation p.H83Y 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-D3-A8GI-06 7 111161413 111161413 C T IMMP2L Missense_Mutation p.D31N 0.35 tolerated(0.07) possibly_damaging(0.863) TCGA-D3-A8GI-06 7 111381181 111381181 G A DOCK4 Missense_Mutation p.S1661L 0.43 tolerated(0.19) benign(0.005) TCGA-D3-A8GI-06 7 113517753 113517753 T C PPP1R3A 3'UTR 0.42 TCGA-D3-A8GI-06 7 113519925 113519925 T A PPP1R3A Missense_Mutation p.T408S 0.44 deleterious(0.05) benign(0) TCGA-D3-A8GI-06 7 113519963 113519963 G A PPP1R3A Missense_Mutation p.S395F 0.43 tolerated(0.08) benign(0.014) TCGA-D3-A8GI-06 7 11418785 11418785 C T THSD7A Silent p.V1571V 0.29 TCGA-D3-A8GI-06 7 114298150 114298150 G A FOXP2 Silent p.S457S 0.35 TCGA-D3-A8GI-06 7 115581000 115581000 G A TFEC Intron 0.50 TCGA-D3-A8GI-06 7 11630174 11630174 C T THSD7A Missense_Mutation p.G456R 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 116397518 116397518 G A MET Missense_Mutation p.M630I 0.40 tolerated(0.2) benign(0.002) TCGA-D3-A8GI-06 7 116397807 116397807 G A MET Missense_Mutation p.G694E 0.29 tolerated(0.18) benign(0.107) TCGA-D3-A8GI-06 7 116418969 116418969 G T MET Missense_Mutation p.M1178I 0.54 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GI-06 7 116436055 116436055 C A MET Silent p.V1368V 0.54 TCGA-D3-A8GI-06 7 116436056 116436056 C T MET Missense_Mutation p.H1369Y 0.54 tolerated(0.14) possibly_damaging(0.743) TCGA-D3-A8GI-06 7 116528204 116528204 C T CAPZA2 Silent p.I21I 0.40 TCGA-D3-A8GI-06 7 116918120 116918120 C T WNT2 3'UTR 0.58 TCGA-D3-A8GI-06 7 117232697 117232697 G A CFTR Missense_Mutation p.E826K 0.28 deleterious(0.01) possibly_damaging(0.701) TCGA-D3-A8GI-06 7 117243690 117243690 G A CFTR Missense_Mutation p.G921E 0.49 deleterious(0.01) probably_damaging(0.968) TCGA-D3-A8GI-06 7 117250576 117250576 T G CFTR Missense_Mutation p.L998V 0.34 tolerated(1) benign(0.006) TCGA-D3-A8GI-06 7 117432461 117432461 C T CTTNBP2 Silent p.R263R 0.43 TCGA-D3-A8GI-06 7 120591178 120591178 C T ING3 Intron 0.29 TCGA-D3-A8GI-06 7 120591179 120591179 C T ING3 Intron 0.29 TCGA-D3-A8GI-06 7 120629517 120629517 T A CPED1 5'UTR 0.36 TCGA-D3-A8GI-06 7 121726106 121726106 G A AASS Missense_Mutation p.S715F 0.37 deleterious(0.04) benign(0.389) TCGA-D3-A8GI-06 7 121766477 121766477 G A AASS Missense_Mutation p.H142Y 0.54 deleterious(0.02) possibly_damaging(0.489) TCGA-D3-A8GI-06 7 121769592 121769592 C T AASS Splice_Site p.X71_splice 0.50 TCGA-D3-A8GI-06 7 122342069 122342069 C T RNF148 Missense_Mutation p.E246K 0.45 tolerated(0.07) benign(0.156) TCGA-D3-A8GI-06 7 123092894 123092894 G A IQUB Missense_Mutation p.S760L 0.47 deleterious(0.01) possibly_damaging(0.558) TCGA-D3-A8GI-06 7 123336762 123336762 G A WASL Missense_Mutation p.P167L 0.23 deleterious(0) unknown(0) TCGA-D3-A8GI-06 7 123508608 123508608 G A HYAL4 Missense_Mutation p.R94K 0.46 tolerated(0.08) benign(0.09) TCGA-D3-A8GI-06 7 123593684 123593684 A C SPAM1 Silent p.V20V 0.36 TCGA-D3-A8GI-06 7 123594569 123594569 C T SPAM1 Silent p.F315F 0.56 TCGA-D3-A8GI-06 7 126086189 126086189 C T GRM8 Missense_Mutation p.E890K 0.55 tolerated(0.12) benign(0.292) TCGA-D3-A8GI-06 7 127894625 127894625 C T LEP Missense_Mutation p.R105W 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 7 127979297 127979297 C T RBM28 Missense_Mutation p.R119Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 7 128038513 128038513 G A IMPDH1 Silent p.Y343Y 0.32 TCGA-D3-A8GI-06 7 128363251 128363251 T C FAM71F1 Silent p.L230L 0.50 TCGA-D3-A8GI-06 7 128415552 128415552 C T OPN1SW Missense_Mutation p.G98E 0.40 deleterious(0.05) benign(0.438) TCGA-D3-A8GI-06 7 128445511 128445511 C T CCDC136 Missense_Mutation p.P294L 0.50 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GI-06 7 128475417 128475417 C T FLNC Silent p.I130I 0.34 TCGA-D3-A8GI-06 7 128475629 128475629 G T FLNC Splice_Site p.X201_splice 0.35 TCGA-D3-A8GI-06 7 128477467 128477467 G A FLNC Missense_Mutation p.E239K 0.55 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 128485053 128485053 G A FLNC Silent p.V1178V 0.47 TCGA-D3-A8GI-06 7 128496822 128496822 C T FLNC Missense_Mutation p.P2470S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 128498403 128498403 G A FLNC Missense_Mutation p.M2668I 0.45 deleterious(0.01) benign(0.043) TCGA-D3-A8GI-06 7 128807395 128807395 C T TSPAN33 Silent p.I248I 0.44 TCGA-D3-A8GI-06 7 129832633 129832633 G A TMEM209 Missense_Mutation p.P202S 0.47 tolerated(0.33) benign(0.006) TCGA-D3-A8GI-06 7 129908786 129908786 T C CPA2 Missense_Mutation p.I30T 0.40 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GI-06 7 129945685 129945685 G C CPA4 Silent p.P172P 0.41 TCGA-D3-A8GI-06 7 131060215 131060215 C T MKLN1 Missense_Mutation p.S44F 0.60 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 7 131194275 131194275 G A PODXL Missense_Mutation p.S291F 0.31 tolerated(0.14) benign(0.347) TCGA-D3-A8GI-06 7 131849026 131849026 A T PLXNA4 Missense_Mutation p.F1459I 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 131866242 131866242 G A PLXNA4 Silent p.I1130I 0.47 TCGA-D3-A8GI-06 7 133164807 133164807 C T EXOC4 Silent p.F444F 0.47 TCGA-D3-A8GI-06 7 133827916 133827916 G A LRGUK Splice_Site p.X196_splice 0.47 TCGA-D3-A8GI-06 7 133861729 133861729 G A LRGUK Missense_Mutation p.E341K 0.34 deleterious(0.02) possibly_damaging(0.743) TCGA-D3-A8GI-06 7 134215511 134215511 G A AKR1B10 Silent p.E61E 0.36 TCGA-D3-A8GI-06 7 134250270 134250270 T A AKR1B15 Intron 0.63 TCGA-D3-A8GI-06 7 137600623 137600623 G A CREB3L2 Missense_Mutation p.P152L 0.54 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A8GI-06 7 138341240 138341240 C T SVOPL Missense_Mutation p.E163K 0.33 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GI-06 7 138444552 138444552 C T ATP6V0A4 Missense_Mutation p.G195E 0.50 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 7 138554395 138554395 G A KIAA1549 Missense_Mutation p.S1555L 0.44 tolerated(0.6) probably_damaging(0.999) TCGA-D3-A8GI-06 7 138603199 138603199 G A KIAA1549 Silent p.S391S 0.37 TCGA-D3-A8GI-06 7 138711496 138711496 G A ZC3HAV1L Silent p.L282L 0.50 TCGA-D3-A8GI-06 7 138969022 138969022 C T UBN2 Missense_Mutation p.P1124L 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GI-06 7 139164517 139164517 T A KLRG2 Silent p.G287G 0.43 TCGA-D3-A8GI-06 7 139257915 139257915 G A HIPK2 Missense_Mutation p.H1119Y 0.36 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GI-06 7 139257916 139257916 G A HIPK2 Silent p.A1118A 0.38 TCGA-D3-A8GI-06 7 139268717 139268717 G A HIPK2 Silent p.S937S 0.40 TCGA-D3-A8GI-06 7 139305269 139305269 G A HIPK2 Missense_Mutation p.R554W 0.52 deleterious(0.01) benign(0.225) TCGA-D3-A8GI-06 7 13971304 13971304 G A ETV1 Missense_Mutation p.P209S 0.27 tolerated(0.13) probably_damaging(0.936) TCGA-D3-A8GI-06 7 139724489 139724489 G A PARP12 Silent p.S659S 0.41 TCGA-D3-A8GI-06 7 139756680 139756680 G A PARP12 Missense_Mutation p.L246F 0.44 tolerated(0.06) benign(0.17) TCGA-D3-A8GI-06 7 140301906 140301906 C T DENND2A Missense_Mutation p.G98R 0.40 tolerated(0.66) benign(0.021) TCGA-D3-A8GI-06 7 140302018 140302018 G A DENND2A Silent p.P60P 0.50 TCGA-D3-A8GI-06 7 140302215 140302215 G A DENND2A 5'UTR 0.31 TCGA-D3-A8GI-06 7 141414188 141414188 G A WEE2 Silent p.R174R 0.45 TCGA-D3-A8GI-06 7 141479016 141479016 C T TAS2R4 Missense_Mutation p.S243L 0.47 tolerated(0.06) benign(0.389) TCGA-D3-A8GI-06 7 141536104 141536104 C T PRSS37 3'UTR 0.89 TCGA-D3-A8GI-06 7 141618719 141618719 G T OR9A4 Missense_Mutation p.G15V 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 141619213 141619213 G A OR9A4 Missense_Mutation p.D180N 0.44 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GI-06 7 141645166 141645166 G A CLEC5A Silent p.F38F 0.32 TCGA-D3-A8GI-06 7 141672521 141672521 G T TAS2R38 Silent p.A323A 0.34 TCGA-D3-A8GI-06 7 141708314 141708314 C T MGAM Missense_Mutation p.P46S 0.57 tolerated(0.49) benign(0) TCGA-D3-A8GI-06 7 141724938 141724938 G A MGAM Missense_Mutation p.S324N 0.40 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GI-06 7 141740620 141740620 G A MGAM Silent p.Q824Q 0.33 TCGA-D3-A8GI-06 7 141750511 141750511 G A MGAM Silent p.V884V 0.51 TCGA-D3-A8GI-06 7 141759762 141759762 G A MGAM Missense_Mutation p.G1352E 0.50 deleterious(0.01) possibly_damaging(0.818) TCGA-D3-A8GI-06 7 141762481 141762481 G A MGAM Silent p.L1412L 0.50 TCGA-D3-A8GI-06 7 141951972 141951972 A C PRSS58 3'UTR 0.55 TCGA-D3-A8GI-06 7 141952064 141952064 C T PRSS58 Missense_Mutation p.E235K 0.55 tolerated(0.55) benign(0.004) TCGA-D3-A8GI-06 7 141952143 141952143 G A PRSS58 Silent p.I208I 0.27 TCGA-D3-A8GI-06 7 141957531 141957531 G A PRSS58 5'UTR 0.51 TCGA-D3-A8GI-06 7 142008711 142008711 C T TRBV3-1 Silent p.L62L 0.36 TCGA-D3-A8GI-06 7 142028214 142028214 C T TRBV6-1 Missense_Mutation p.L13F 0.34 tolerated(0.21) benign(0.074) TCGA-D3-A8GI-06 7 142045523 142045523 C T TRBV4-2 Silent p.V17V 0.27 TCGA-D3-A8GI-06 7 142104319 142104319 C T TRBV6-9 Missense_Mutation p.G49E 0.58 tolerated(0.33) benign(0.001) TCGA-D3-A8GI-06 7 142143900 142143900 C T TRBV6-7 Silent p.L32L 0.28 TCGA-D3-A8GI-06 7 142149353 142149353 G A TRBV5-5 Silent p.L14L 0.34 TCGA-D3-A8GI-06 7 142161948 142161948 G A TRBV6-6 Silent p.F109F 0.32 TCGA-D3-A8GI-06 7 142176604 142176604 G A TRBV7-4 Silent p.S24S 0.60 TCGA-D3-A8GI-06 7 142180580 142180580 G A TRBV6-5 Silent p.F93F 0.40 TCGA-D3-A8GI-06 7 142206977 142206977 G A TRBV10-2 5'UTR 0.27 TCGA-D3-A8GI-06 7 142231722 142231722 G A TRBV10-1 Silent p.I65I 0.35 TCGA-D3-A8GI-06 7 142247269 142247269 C T TRBV7-3 Missense_Mutation p.E63K 0.50 TCGA-D3-A8GI-06 7 142334809 142334809 G A TRBV20-1 Silent p.E77E 0.46 TCGA-D3-A8GI-06 7 142423617 142423617 G A TRBV27 Silent p.R91R 0.29 TCGA-D3-A8GI-06 7 142458426 142458426 G A PRSS1 Missense_Mutation p.D21N 0.18 deleterious(0.02) possibly_damaging(0.873) TCGA-D3-A8GI-06 7 142499081 142499081 A T TRBC2 Missense_Mutation p.I120F 0.27 tolerated(0.44) benign(0.105) TCGA-D3-A8GI-06 7 142569600 142569600 G A TRPV6 Missense_Mutation p.P680S 0.41 tolerated(0.12) benign(0.001) TCGA-D3-A8GI-06 7 142606687 142606687 C T TRPV5 Missense_Mutation p.E622K 0.41 tolerated(0.56) benign(0.007) TCGA-D3-A8GI-06 7 142622659 142622659 G A TRPV5 Nonsense_Mutation p.R363* 0.50 TCGA-D3-A8GI-06 7 142622683 142622683 G A TRPV5 Missense_Mutation p.R355C 0.29 tolerated(0.14) benign(0.033) TCGA-D3-A8GI-06 7 142627488 142627488 A C TRPV5 Missense_Mutation p.L61R 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 7 142638489 142638489 C T KEL Silent p.R683R 0.49 TCGA-D3-A8GI-06 7 142640938 142640938 G A KEL Silent p.V508V 0.31 TCGA-D3-A8GI-06 7 142643387 142643387 C T KEL Nonsense_Mutation p.W407* 0.48 TCGA-D3-A8GI-06 7 142651433 142651433 C T KEL Silent p.L254L 0.34 TCGA-D3-A8GI-06 7 142658930 142658930 C T KEL Silent p.P11P 0.51 TCGA-D3-A8GI-06 7 142749748 142749748 C T OR6V1 Missense_Mutation p.S104F 0.40 tolerated(0.21) benign(0.328) TCGA-D3-A8GI-06 7 142836643 142836643 A T PIP Missense_Mutation p.I117F 0.38 deleterious(0) benign(0.367) TCGA-D3-A8GI-06 7 143002182 143002182 C T CASP2 3'UTR 0.32 TCGA-D3-A8GI-06 7 143013291 143013291 T A CLCN1 5'UTR 0.42 TCGA-D3-A8GI-06 7 143013398 143013398 C G CLCN1 Silent p.T31T 0.32 TCGA-D3-A8GI-06 7 143053768 143053768 C T FAM131B Missense_Mutation p.D320N 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 143098546 143098546 G A EPHA1 Silent p.F101F 0.47 TCGA-D3-A8GI-06 7 143104748 143104748 C T EPHA1 Missense_Mutation p.A36T 0.56 tolerated(0.07) possibly_damaging(0.648) TCGA-D3-A8GI-06 7 143140571 143140571 G A TAS2R60 Missense_Mutation p.G9E 0.45 tolerated(0.07) benign(0.223) TCGA-D3-A8GI-06 7 143141288 143141288 C T TAS2R60 Missense_Mutation p.A248V 0.44 tolerated(0.14) benign(0.176) TCGA-D3-A8GI-06 7 143175462 143175462 G A TAS2R41 Missense_Mutation p.G166E 0.16 tolerated(0.16) benign(0.029) TCGA-D3-A8GI-06 7 143175463 143175463 G A TAS2R41 Silent p.G166G 0.16 TCGA-D3-A8GI-06 7 143453518 143453518 C T CTAGE6 Missense_Mutation p.E412K 0.16 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 7 143453536 143453536 C T CTAGE6 Missense_Mutation p.E406K 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-D3-A8GI-06 7 143453794 143453794 G A CTAGE6 Missense_Mutation p.H320Y 0.18 tolerated(1) benign(0.005) TCGA-D3-A8GI-06 7 143556123 143556123 C T FAM115A Missense_Mutation p.E767K 0.19 tolerated(0.17) benign(0.021) TCGA-D3-A8GI-06 7 143632592 143632592 T A OR2F2 Missense_Mutation p.H89Q 0.36 tolerated(0.29) benign(0.004) TCGA-D3-A8GI-06 7 143632944 143632944 C T OR2F2 Silent p.L207L 0.57 TCGA-D3-A8GI-06 7 143701289 143701289 C T OR6B1 Missense_Mutation p.S67F 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GI-06 7 143701664 143701664 T A OR6B1 Missense_Mutation p.M192K 0.32 tolerated(0.24) possibly_damaging(0.675) TCGA-D3-A8GI-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.42 deleterious(0.03) benign(0.003) TCGA-D3-A8GI-06 7 143771429 143771429 G A OR2A25 Silent p.L39L 0.41 TCGA-D3-A8GI-06 7 143771873 143771873 C T OR2A25 Silent p.A187A 0.27 TCGA-D3-A8GI-06 7 143792318 143792318 G A OR2A12 Missense_Mutation p.G40R 0.32 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A8GI-06 7 143792752 143792752 C T OR2A12 Silent p.F184F 0.38 TCGA-D3-A8GI-06 7 143956602 143956602 C T OR2A7 Silent p.G40G 0.15 TCGA-D3-A8GI-06 7 144068340 144068340 C T ARHGEF5 Silent p.L1206L 0.20 TCGA-D3-A8GI-06 7 144068341 144068341 C T ARHGEF5 Missense_Mutation p.R1207W 0.21 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GI-06 7 144096222 144096222 G A NOBOX Silent p.P430P 0.54 TCGA-D3-A8GI-06 7 14622732 14622732 G A DGKB Silent p.F489F 0.16 TCGA-D3-A8GI-06 7 146471473 146471473 G A CNTNAP2 Missense_Mutation p.G70S 0.50 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GI-06 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.48 tolerated(1) benign(0.006) TCGA-D3-A8GI-06 7 147092708 147092708 G A CNTNAP2 Silent p.L502L 0.42 TCGA-D3-A8GI-06 7 147092780 147092780 G A CNTNAP2 Silent p.V526V 0.46 TCGA-D3-A8GI-06 7 147092827 147092827 G A CNTNAP2 Missense_Mutation p.G542E 0.40 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GI-06 7 147600729 147600729 G A CNTNAP2 Missense_Mutation p.G724E 0.32 tolerated(0.08) benign(0.082) TCGA-D3-A8GI-06 7 1478557 1478557 G A MICALL2 Missense_Mutation p.R681W 0.59 deleterious(0.02) possibly_damaging(0.517) TCGA-D3-A8GI-06 7 147914455 147914455 C T CNTNAP2 Missense_Mutation p.S1029F 0.41 tolerated(0.1) benign(0.153) TCGA-D3-A8GI-06 7 148312461 148312461 G A C7orf33 Missense_Mutation p.A168T 0.50 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-D3-A8GI-06 7 148802542 148802542 C T ZNF425 Missense_Mutation p.A141T 0.35 tolerated(0.19) benign(0.046) TCGA-D3-A8GI-06 7 149191539 149191539 G A ZNF746 Missense_Mutation p.S27L 0.32 deleterious(0) possibly_damaging(0.811) TCGA-D3-A8GI-06 7 149474290 149474290 C T ZNF467 5'Flank 0.64 TCGA-D3-A8GI-06 7 149486339 149486339 G A SSPO RNA 0.32 TCGA-D3-A8GI-06 7 150027923 150027923 G A ZBED6CL Missense_Mutation p.G144R 0.34 tolerated(0.29) benign(0.006) TCGA-D3-A8GI-06 7 150027924 150027924 G A ZBED6CL Missense_Mutation p.G144E 0.34 tolerated(0.45) benign(0.011) TCGA-D3-A8GI-06 7 150028030 150028030 G A ZBED6CL Silent p.E179E 0.55 TCGA-D3-A8GI-06 7 150174815 150174815 G A GIMAP8 Missense_Mutation p.E649K 0.47 tolerated(0.28) benign(0.033) TCGA-D3-A8GI-06 7 150217107 150217107 G A GIMAP7 Silent p.G15G 0.29 TCGA-D3-A8GI-06 7 150269540 150269540 G A GIMAP4 Missense_Mutation p.E128K 0.44 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 7 150269666 150269666 G A GIMAP4 Missense_Mutation p.E170K 0.37 tolerated(0.14) benign(0.081) TCGA-D3-A8GI-06 7 150325271 150325271 C T GIMAP6 Missense_Mutation p.D139N 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 150325305 150325305 G A GIMAP6 Silent p.L127L 0.48 TCGA-D3-A8GI-06 7 150557556 150557556 C T AOC1 Intron 0.39 TCGA-D3-A8GI-06 7 150558108 150558108 G A AOC1 Silent p.G689G 0.61 TCGA-D3-A8GI-06 7 150646136 150646136 C T KCNH2 Silent p.G800G 0.45 TCGA-D3-A8GI-06 7 150690874 150690874 G A NOS3 5'UTR 0.71 TCGA-D3-A8GI-06 7 150696062 150696062 G A NOS3 Missense_Mutation p.G282E 0.44 tolerated(0.27) benign(0.221) TCGA-D3-A8GI-06 7 150697626 150697626 C T NOS3 Missense_Mutation p.S391L 0.25 deleterious(0.01) benign(0.039) TCGA-D3-A8GI-06 7 150934838 150934838 C T CHPF2 Missense_Mutation p.R464C 0.61 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GI-06 7 151082326 151082326 G A WDR86 Intron 0.34 TCGA-D3-A8GI-06 7 151372713 151372713 G A PRKAG2 Silent p.L159L 0.31 TCGA-D3-A8GI-06 7 151873725 151873725 G A KMT2C Missense_Mutation p.P2938L 0.33 benign(0) TCGA-D3-A8GI-06 7 151944987 151944987 C T KMT2C Silent p.Q844Q 0.06 TCGA-D3-A8GI-06 7 154237646 154237646 G A DPP6 Missense_Mutation p.G163R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 154379734 154379734 C T DPP6 Intron 0.42 TCGA-D3-A8GI-06 7 154667748 154667748 C T DPP6 Silent p.L672L 0.63 TCGA-D3-A8GI-06 7 155100173 155100173 C T INSIG1 3'UTR 0.35 TCGA-D3-A8GI-06 7 156963025 156963025 C T UBE3C Missense_Mutation p.R75C 0.47 deleterious(0.02) benign(0.002) TCGA-D3-A8GI-06 7 157926383 157926383 G A PTPRN2 Silent p.I514I 0.61 TCGA-D3-A8GI-06 7 158454939 158454939 A G NCAPG2 Missense_Mutation p.Y646H 0.42 tolerated(0.06) benign(0.414) TCGA-D3-A8GI-06 7 16823120 16823120 G A TSPAN13 3'UTR 0.33 TCGA-D3-A8GI-06 7 16913404 16913404 C T AGR3 Missense_Mutation p.S58N 0.45 tolerated(0.06) benign(0.017) TCGA-D3-A8GI-06 7 19748658 19748658 C T TWISTNB 5'UTR 0.54 TCGA-D3-A8GI-06 7 20434530 20434530 C T ITGB8 Silent p.P356P 0.25 TCGA-D3-A8GI-06 7 20698738 20698738 C T ABCB5 Intron 0.33 TCGA-D3-A8GI-06 7 20784924 20784924 C T ABCB5 Nonsense_Mutation p.Q1098* 0.37 TCGA-D3-A8GI-06 7 21856257 21856257 G A DNAH11 Missense_Mutation p.G3509E 0.38 probably_damaging(0.993) TCGA-D3-A8GI-06 7 21856283 21856283 G A DNAH11 Missense_Mutation p.G3518R 0.48 possibly_damaging(0.814) TCGA-D3-A8GI-06 7 21892249 21892249 G A DNAH11 Silent p.K3694K 0.29 TCGA-D3-A8GI-06 7 21892250 21892250 G A DNAH11 Splice_Site p.X3694_splice 0.30 TCGA-D3-A8GI-06 7 21943729 21943729 G A CDCA7L Missense_Mutation p.P399L 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 7 22162043 22162043 C T RAPGEF5 Missense_Mutation p.R725K 0.40 tolerated(0.22) probably_damaging(0.986) TCGA-D3-A8GI-06 7 22165268 22165268 G A RAPGEF5 Silent p.I677I 0.52 TCGA-D3-A8GI-06 7 22176596 22176596 G A RAPGEF5 Silent p.I608I 0.37 TCGA-D3-A8GI-06 7 22533212 22533212 G A STEAP1B Missense_Mutation p.P110S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 7 23296630 23296630 C T GPNMB Missense_Mutation p.P163S 0.51 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GI-06 7 23741880 23741880 T A FAM221A 3'UTR 0.36 TCGA-D3-A8GI-06 7 23775193 23775193 G A STK31 Missense_Mutation p.E174K 0.35 tolerated(0.42) benign(0.005) TCGA-D3-A8GI-06 7 23808793 23808793 G A STK31 Silent p.K532K 0.28 TCGA-D3-A8GI-06 7 23830532 23830532 A T STK31 Silent p.S909S 0.58 TCGA-D3-A8GI-06 7 2472321 2472321 T C CHST12 Missense_Mutation p.V16A 0.59 tolerated(0.26) benign(0.008) TCGA-D3-A8GI-06 7 2473051 2473051 C T CHST12 Silent p.F259F 0.49 TCGA-D3-A8GI-06 7 24911640 24911640 G A OSBPL3 Nonsense_Mutation p.Q49* 0.51 TCGA-D3-A8GI-06 7 26224457 26224457 T C NFE2L3 Missense_Mutation p.L380P 0.36 tolerated(0.06) benign(0.086) TCGA-D3-A8GI-06 7 2638179 2638179 C T IQCE Silent p.L507L 0.49 TCGA-D3-A8GI-06 7 27134931 27134931 G A HOXA1 Missense_Mutation p.P201S 0.51 tolerated(0.37) benign(0.144) TCGA-D3-A8GI-06 7 27147902 27147902 G A HOXA3 Missense_Mutation p.P322S 0.42 tolerated(0.51) benign(0.064) TCGA-D3-A8GI-06 7 27183036 27183036 A C HOXA5 Missense_Mutation p.F64C 0.52 tolerated(0.12) benign(0.265) TCGA-D3-A8GI-06 7 2740219 2740219 C T AMZ1 Missense_Mutation p.A45V 0.26 deleterious(0.05) possibly_damaging(0.638) TCGA-D3-A8GI-06 7 28610104 28610104 C T CREB5 Missense_Mutation p.P138L 0.48 deleterious(0.03) possibly_damaging(0.791) TCGA-D3-A8GI-06 7 2983932 2983932 C T CARD11 Missense_Mutation p.D200N 0.63 deleterious(0) possibly_damaging(0.707) TCGA-D3-A8GI-06 7 30066049 30066049 C T FKBP14 Missense_Mutation p.E26K 0.31 deleterious(0.02) possibly_damaging(0.619) TCGA-D3-A8GI-06 7 30692913 30692913 C T CRHR2 3'UTR 0.57 TCGA-D3-A8GI-06 7 30702320 30702320 G A CRHR2 Silent p.F256F 0.49 TCGA-D3-A8GI-06 7 30795375 30795375 C A INMT Missense_Mutation p.Q234K 0.49 tolerated(0.68) benign(0.003) TCGA-D3-A8GI-06 7 31123775 31123775 G A ADCYAP1R1 Silent p.R116R 0.48 TCGA-D3-A8GI-06 7 31378107 31378107 G A NEUROD6 Missense_Mutation p.P259L 0.44 deleterious(0.02) probably_damaging(0.975) TCGA-D3-A8GI-06 7 31746958 31746958 G A PPP1R17 3'UTR 0.29 TCGA-D3-A8GI-06 7 31864557 31864557 C T PDE1C Missense_Mutation p.D504N 0.50 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GI-06 7 31867951 31867951 G A PDE1C Missense_Mutation p.P474S 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-D3-A8GI-06 7 33423401 33423401 G A BBS9 Missense_Mutation p.G638E 0.50 tolerated(0.1) benign(0.396) TCGA-D3-A8GI-06 7 34125373 34125373 G A BMPER Missense_Mutation p.E472K 0.48 tolerated(0.41) benign(0.066) TCGA-D3-A8GI-06 7 34192774 34192774 G A BMPER Nonsense_Mutation p.W649* 0.48 TCGA-D3-A8GI-06 7 34698164 34698164 C T NPSR1 Missense_Mutation p.S47F 0.42 tolerated(0.17) benign(0.11) TCGA-D3-A8GI-06 7 34874048 34874048 G A NPSR1 Missense_Mutation p.E245K 0.26 tolerated(0.43) benign(0.049) TCGA-D3-A8GI-06 7 35145655 35145655 C T DPY19L2P1 Splice_Site 0.24 TCGA-D3-A8GI-06 7 36324409 36324409 C T EEPD1 Missense_Mutation p.P386S 0.52 deleterious(0.02) benign(0.174) TCGA-D3-A8GI-06 7 37172738 37172738 G A ELMO1 Silent p.I396I 0.59 TCGA-D3-A8GI-06 7 38288908 38288908 G A TRGC2 Silent p.I89I 0.41 TCGA-D3-A8GI-06 7 38398389 38398389 C T TRGV3 Silent p.T26T 0.43 TCGA-D3-A8GI-06 7 38791814 38791814 G A VPS41 Missense_Mutation p.P630S 0.27 tolerated(0.14) possibly_damaging(0.796) TCGA-D3-A8GI-06 7 39379528 39379528 C T POU6F2 Nonsense_Mutation p.Q267* 0.48 TCGA-D3-A8GI-06 7 39730131 39730131 T C RALA Missense_Mutation p.F89L 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GI-06 7 4002441 4002441 G A SDK1 Missense_Mutation p.E463K 0.32 tolerated(0.64) benign(0.022) TCGA-D3-A8GI-06 7 4185391 4185391 C T SDK1 Silent p.P1422P 0.53 TCGA-D3-A8GI-06 7 42005059 42005059 G A GLI3 Silent p.P1204P 0.47 TCGA-D3-A8GI-06 7 42079693 42079693 G A GLI3 Silent p.S324S 0.51 TCGA-D3-A8GI-06 7 4247782 4247782 C T SDK1 Missense_Mutation p.L1756F 0.17 deleterious(0.03) benign(0.078) TCGA-D3-A8GI-06 7 4249777 4249777 C T SDK1 Missense_Mutation p.P1841L 0.49 deleterious(0) possibly_damaging(0.897) TCGA-D3-A8GI-06 7 42959530 42959530 G A PSMA2 Intron 0.40 TCGA-D3-A8GI-06 7 43508529 43508529 G A HECW1 Missense_Mutation p.R975Q 0.22 tolerated(0.05) benign(0.027) TCGA-D3-A8GI-06 7 44040714 44040714 G A SPDYE1 Silent p.R30R 0.41 TCGA-D3-A8GI-06 7 44184823 44184823 G A GCK Missense_Mutation p.T438I 0.40 deleterious(0.02) possibly_damaging(0.762) TCGA-D3-A8GI-06 7 44268467 44268467 C T CAMK2B Missense_Mutation p.A466T 0.36 tolerated_low_confidence(0.31) benign(0.01) TCGA-D3-A8GI-06 7 44552933 44552933 G A NPC1L1 3'UTR 0.60 TCGA-D3-A8GI-06 7 44556497 44556497 G A NPC1L1 Silent p.I1135I 0.41 TCGA-D3-A8GI-06 7 44579085 44579085 C T NPC1L1 Missense_Mutation p.G304E 0.53 tolerated(0.95) benign(0.045) TCGA-D3-A8GI-06 7 44579755 44579755 G A NPC1L1 Missense_Mutation p.L81F 0.26 tolerated(0.2) possibly_damaging(0.45) TCGA-D3-A8GI-06 7 45004044 45004044 C T MYO1G Silent p.G867G 0.23 TCGA-D3-A8GI-06 7 45725815 45725815 G A ADCY1 Splice_Site p.X776_splice 0.29 TCGA-D3-A8GI-06 7 47336721 47336721 A C TNS3 Missense_Mutation p.V1212G 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 47342944 47342944 C T TNS3 Missense_Mutation p.G1021S 0.48 tolerated(0.54) benign(0.003) TCGA-D3-A8GI-06 7 47440044 47440044 G A TNS3 Missense_Mutation p.P289S 0.43 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GI-06 7 47921512 47921512 G A PKD1L1 Missense_Mutation p.S1146F 0.32 deleterious(0) possibly_damaging(0.588) TCGA-D3-A8GI-06 7 47930357 47930357 G A PKD1L1 Missense_Mutation p.H820Y 0.74 tolerated(0.16) benign(0.18) TCGA-D3-A8GI-06 7 4899941 4899941 G A PAPOLB Missense_Mutation p.H500Y 0.53 deleterious(0.03) benign(0.062) TCGA-D3-A8GI-06 7 4917617 4917617 G A RADIL Missense_Mutation p.P52S 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 50070709 50070709 C T ZPBP Missense_Mutation p.E229K 0.42 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 5036596 5036596 C T RNF216P1 RNA 0.35 TCGA-D3-A8GI-06 7 53103368 53103368 G A POM121L12 Missense_Mutation p.G2S 0.73 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-D3-A8GI-06 7 53103391 53103391 C T POM121L12 Silent p.S9S 0.29 TCGA-D3-A8GI-06 7 53104174 53104174 G A POM121L12 Silent p.A270A 0.50 TCGA-D3-A8GI-06 7 54636848 54636848 C T VSTM2A 3'UTR 0.54 TCGA-D3-A8GI-06 7 55232991 55232991 C T EGFR Nonsense_Mutation p.Q581* 0.56 TCGA-D3-A8GI-06 7 5541030 5541030 G A FBXL18 Silent p.V290V 0.40 TCGA-D3-A8GI-06 7 55559972 55559972 G A VOPP1 Intron 0.44 TCGA-D3-A8GI-06 7 56062600 56062600 C T GBAS Missense_Mutation p.R211C 0.26 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GI-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.40 TCGA-D3-A8GI-06 7 57187747 57187747 G A ZNF479 Missense_Mutation p.H459Y 0.48 deleterious(0.03) benign(0.009) TCGA-D3-A8GI-06 7 57188167 57188167 G A ZNF479 Missense_Mutation p.H319Y 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GI-06 7 5923542 5923542 G A OCM Silent p.E72E 0.25 TCGA-D3-A8GI-06 7 62752678 62752678 G A ZNF733P RNA 0.27 TCGA-D3-A8GI-06 7 62752683 62752683 C T ZNF733P RNA 0.36 TCGA-D3-A8GI-06 7 63726940 63726940 C T ZNF679 Missense_Mutation p.S310F 0.54 tolerated(0.32) possibly_damaging(0.462) TCGA-D3-A8GI-06 7 63809304 63809304 A T ZNF736 Missense_Mutation p.T355S 0.37 tolerated(0.47) benign(0.017) TCGA-D3-A8GI-06 7 6426893 6426893 C T RAC1 Missense_Mutation p.P29L 0.38 deleterious(0.02) possibly_damaging(0.839) TCGA-D3-A8GI-06 7 64452225 64452225 G A ERV3-1 Missense_Mutation p.R394C 0.44 deleterious(0.02) possibly_damaging(0.735) TCGA-D3-A8GI-06 7 65541078 65541078 G A ASL Missense_Mutation p.E4K 0.56 tolerated(0.16) benign(0.007) TCGA-D3-A8GI-06 7 66236923 66236923 G A RABGEF1 Missense_Mutation p.D13N 0.56 deleterious(0) possibly_damaging(0.759) TCGA-D3-A8GI-06 7 6639660 6639660 C T C7orf26 Missense_Mutation p.P261S 0.38 tolerated(0.63) benign(0.005) TCGA-D3-A8GI-06 7 66582592 66582592 C T TYW1 Missense_Mutation p.A562V 0.49 deleterious(0.01) possibly_damaging(0.792) TCGA-D3-A8GI-06 7 6731942 6731942 G A ZNF12 Missense_Mutation p.R211C 0.29 deleterious(0.01) benign(0.393) TCGA-D3-A8GI-06 7 6797528 6797528 G A RSPH10B2 Missense_Mutation p.E74K 0.19 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GI-06 7 72643620 72643620 C T NCF1B RNA 0.31 TCGA-D3-A8GI-06 7 72657726 72657726 G A GTF2IRD2P1 RNA 0.46 TCGA-D3-A8GI-06 7 72664070 72664070 G A GTF2IRD2P1 RNA 0.18 TCGA-D3-A8GI-06 7 72718303 72718303 G A NSUN5 Silent p.F286F 0.58 TCGA-D3-A8GI-06 7 72744229 72744229 G A FKBP6 Silent p.P114P 0.33 TCGA-D3-A8GI-06 7 73010776 73010776 G A MLXIPL Missense_Mutation p.S619F 0.41 deleterious(0.03) benign(0.418) TCGA-D3-A8GI-06 7 73010997 73010997 C T MLXIPL Silent p.A598A 0.67 TCGA-D3-A8GI-06 7 73279355 73279355 C T WBSCR28 Silent p.F35F 0.48 TCGA-D3-A8GI-06 7 73480301 73480301 G A ELN Missense_Mutation p.G687E 0.47 unknown(0) TCGA-D3-A8GI-06 7 73523345 73523345 C T LIMK1 Silent p.L421L 0.47 TCGA-D3-A8GI-06 7 73526274 73526274 C T LIMK1 Silent p.H452H 0.50 TCGA-D3-A8GI-06 7 73601971 73601971 C T EIF4H Silent p.S30S 0.32 TCGA-D3-A8GI-06 7 73929766 73929766 C T GTF2IRD1 Silent p.P119P 0.59 TCGA-D3-A8GI-06 7 73973279 73973279 C T GTF2IRD1 Silent p.P764P 0.47 TCGA-D3-A8GI-06 7 7413044 7413044 G A COL28A1 Silent p.D831D 0.49 TCGA-D3-A8GI-06 7 74211498 74211498 G T GTF2IRD2 Silent p.R785R 0.48 TCGA-D3-A8GI-06 7 75054964 75054964 A G POM121C Silent p.S200S 0.52 TCGA-D3-A8GI-06 7 75441184 75441184 G A CCL24 Missense_Mutation p.S97F 0.56 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GI-06 7 75517791 75517791 C T RHBDD2 3'UTR 0.79 TCGA-D3-A8GI-06 7 75658016 75658016 G A STYXL1 Missense_Mutation p.R37C 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 7 76826279 76826279 A G FGL2 Missense_Mutation p.C213R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 76829002 76829002 C T FGL2 Missense_Mutation p.D37N 0.55 tolerated(0.4) benign(0.001) TCGA-D3-A8GI-06 7 76889360 76889360 G A CCDC146 Missense_Mutation p.E265K 0.32 tolerated(0.07) benign(0.193) TCGA-D3-A8GI-06 7 76909775 76909775 C T CCDC146 Missense_Mutation p.A575V 0.39 tolerated(0.32) benign(0.087) TCGA-D3-A8GI-06 7 76924098 76924098 G A CCDC146 Missense_Mutation p.G928D 0.57 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 76941229 76941229 G A GSAP Missense_Mutation p.S801L 0.42 tolerated(0.05) benign(0.035) TCGA-D3-A8GI-06 7 77708361 77708361 C T MAGI2 Silent p.R1203R 0.41 TCGA-D3-A8GI-06 7 77789436 77789436 C T MAGI2 Silent p.Q917Q 0.35 TCGA-D3-A8GI-06 7 77885317 77885317 C T MAGI2 Missense_Mutation p.D664N 0.35 deleterious(0.03) possibly_damaging(0.601) TCGA-D3-A8GI-06 7 77885426 77885426 C G MAGI2 Silent p.R627R 0.49 TCGA-D3-A8GI-06 7 78130910 78130910 C T MAGI2 Missense_Mutation p.E317K 0.43 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A8GI-06 7 8110745 8110745 C T GLCCI1 Silent p.L387L 0.44 TCGA-D3-A8GI-06 7 81374389 81374389 G A HGF Missense_Mutation p.H225Y 0.55 tolerated(0.09) benign(0.004) TCGA-D3-A8GI-06 7 81374404 81374404 G A HGF Nonsense_Mutation p.R220* 0.39 TCGA-D3-A8GI-06 7 81594930 81594930 G A CACNA2D1 Missense_Mutation p.H852Y 0.37 deleterious(0) benign(0.251) TCGA-D3-A8GI-06 7 81600036 81600036 C T CACNA2D1 Missense_Mutation p.R720Q 0.29 tolerated(0.45) benign(0.081) TCGA-D3-A8GI-06 7 82390075 82390075 C T PCLO Missense_Mutation p.M5056I 0.33 unknown(0) TCGA-D3-A8GI-06 7 82474786 82474786 G A PCLO Missense_Mutation p.S4616F 0.41 unknown(0) TCGA-D3-A8GI-06 7 82545723 82545723 G A PCLO Missense_Mutation p.P3860L 0.33 unknown(0) TCGA-D3-A8GI-06 7 82546026 82546026 C T PCLO Missense_Mutation p.R3759Q 0.44 unknown(0) TCGA-D3-A8GI-06 7 82579047 82579047 G A PCLO Silent p.S3619S 0.29 TCGA-D3-A8GI-06 7 82579048 82579048 G A PCLO Missense_Mutation p.S3619F 0.29 unknown(0) TCGA-D3-A8GI-06 7 82579541 82579541 G A PCLO Missense_Mutation p.R3455W 0.42 unknown(0) TCGA-D3-A8GI-06 7 82580229 82580229 T A PCLO Missense_Mutation p.K3225N 0.43 unknown(0) TCGA-D3-A8GI-06 7 82580365 82580365 G A PCLO Missense_Mutation p.S3180F 0.41 unknown(0) TCGA-D3-A8GI-06 7 82581416 82581416 C T PCLO Silent p.R2951R 0.38 TCGA-D3-A8GI-06 7 82582761 82582761 G A PCLO Missense_Mutation p.P2503L 0.31 unknown(0) TCGA-D3-A8GI-06 7 82583350 82583350 C T PCLO Missense_Mutation p.E2307K 0.34 unknown(0) TCGA-D3-A8GI-06 7 82583938 82583938 G A PCLO Missense_Mutation p.L2111F 0.50 unknown(0) TCGA-D3-A8GI-06 7 82585473 82585473 C T PCLO Missense_Mutation p.G1599E 0.42 unknown(0) TCGA-D3-A8GI-06 7 82585623 82585623 G A PCLO Missense_Mutation p.S1549L 0.55 unknown(0) TCGA-D3-A8GI-06 7 82586245 82586245 C T PCLO Missense_Mutation p.E1342K 0.48 unknown(0) TCGA-D3-A8GI-06 7 82595107 82595107 C T PCLO Missense_Mutation p.E1333K 0.39 unknown(0) TCGA-D3-A8GI-06 7 82595558 82595558 C T PCLO Missense_Mutation p.M1182I 0.38 unknown(0) TCGA-D3-A8GI-06 7 82763730 82763730 G A PCLO Missense_Mutation p.P1046S 0.30 unknown(0) TCGA-D3-A8GI-06 7 82763807 82763807 C T PCLO Missense_Mutation p.R1020K 0.53 unknown(0) TCGA-D3-A8GI-06 7 82785384 82785384 C T PCLO Silent p.K191K 0.54 TCGA-D3-A8GI-06 7 83037745 83037745 G A SEMA3E Silent p.F203F 0.33 TCGA-D3-A8GI-06 7 84628980 84628980 C T SEMA3D Missense_Mutation p.D704N 0.46 tolerated(0.54) benign(0.328) TCGA-D3-A8GI-06 7 84636193 84636193 C T SEMA3D Silent p.L611L 0.54 TCGA-D3-A8GI-06 7 86394655 86394655 G A GRM3 Missense_Mutation p.G65E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 86394693 86394693 G A GRM3 Missense_Mutation p.E78K 0.28 tolerated(0.27) benign(0.037) TCGA-D3-A8GI-06 7 86415877 86415877 G A GRM3 Missense_Mutation p.D257N 0.38 tolerated(0.06) probably_damaging(0.916) TCGA-D3-A8GI-06 7 86416027 86416027 G A GRM3 Missense_Mutation p.E307K 0.38 tolerated(0.78) possibly_damaging(0.599) TCGA-D3-A8GI-06 7 86468856 86468856 G A GRM3 Missense_Mutation p.G676S 0.31 tolerated(1) possibly_damaging(0.681) TCGA-D3-A8GI-06 7 86468900 86468900 C T GRM3 Silent p.F690F 0.33 TCGA-D3-A8GI-06 7 87011232 87011232 C T CROT Missense_Mutation p.P357S 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 7 87037537 87037537 C T ABCB4 Missense_Mutation p.G1032E 0.40 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 7 87144654 87144654 C T ABCB1 Missense_Mutation p.E1059K 0.38 tolerated(0.63) benign(0) TCGA-D3-A8GI-06 7 87148646 87148646 G A ABCB1 Silent p.L975L 0.42 TCGA-D3-A8GI-06 7 87179499 87179499 G A ABCB1 Silent p.P446P 0.45 TCGA-D3-A8GI-06 7 8791064 8791064 G A NXPH1 Missense_Mutation p.G161R 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 7 8791410 8791410 G A NXPH1 3'UTR 0.50 TCGA-D3-A8GI-06 7 89793955 89793955 C T STEAP1 Silent p.F309F 0.29 TCGA-D3-A8GI-06 7 89854825 89854825 C T STEAP2 Silent p.V143V 0.44 TCGA-D3-A8GI-06 7 89856543 89856543 C T STEAP2 Missense_Mutation p.P251S 0.29 tolerated(0.07) possibly_damaging(0.688) TCGA-D3-A8GI-06 7 89866373 89866373 G A STEAP2 3'UTR 0.47 TCGA-D3-A8GI-06 7 89901145 89901145 A T C7orf63 Missense_Mutation p.T245S 0.50 tolerated(0.56) benign(0.001) TCGA-D3-A8GI-06 7 89901146 89901146 C T C7orf63 Missense_Mutation p.T245I 0.52 tolerated(0.39) benign(0.011) TCGA-D3-A8GI-06 7 90042026 90042026 T A CLDN12 Silent p.L12L 0.45 TCGA-D3-A8GI-06 7 90547038 90547038 C T CDK14 Silent p.F257F 0.57 TCGA-D3-A8GI-06 7 91631783 91631783 C T AKAP9 Missense_Mutation p.S851L 0.39 probably_damaging(0.94) TCGA-D3-A8GI-06 7 92734352 92734352 C T SAMD9 Silent p.T353T 0.44 TCGA-D3-A8GI-06 7 92734757 92734757 C T SAMD9 Silent p.E218E 0.46 TCGA-D3-A8GI-06 7 92764918 92764918 G A SAMD9L Missense_Mutation p.P123S 0.34 tolerated(0.74) benign(0.008) TCGA-D3-A8GI-06 7 92848775 92848775 G A HEPACAM2 Intron 0.39 TCGA-D3-A8GI-06 7 92905495 92905495 C T CCDC132 Missense_Mutation p.H274Y 0.41 deleterious(0.01) possibly_damaging(0.903) TCGA-D3-A8GI-06 7 93055841 93055841 C T CALCR Missense_Mutation p.G452R 0.41 tolerated(0.17) benign(0.046) TCGA-D3-A8GI-06 7 93065335 93065335 G A CALCR Missense_Mutation p.P394S 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 93108766 93108766 C T CALCR Silent p.E53E 0.37 TCGA-D3-A8GI-06 7 93112115 93112115 G A CALCR Intron 0.48 TCGA-D3-A8GI-06 7 94040434 94040434 C T COL1A2 Missense_Mutation p.R440C 0.56 probably_damaging(0.998) TCGA-D3-A8GI-06 7 94055839 94055839 C T COL1A2 Silent p.I1034I 0.50 TCGA-D3-A8GI-06 7 94232709 94232709 C T SGCE Missense_Mutation p.E240K 0.30 tolerated(0.67) benign(0.011) TCGA-D3-A8GI-06 7 94293518 94293518 A T PEG10 Missense_Mutation p.E217V 0.57 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 7 95625332 95625332 G A DYNC1I1 Missense_Mutation p.V323I 0.51 tolerated(0.31) probably_damaging(0.989) TCGA-D3-A8GI-06 7 95726852 95726852 C T DYNC1I1 Missense_Mutation p.R629C 0.33 deleterious(0) possibly_damaging(0.841) TCGA-D3-A8GI-06 7 96650232 96650232 G A DLX5 Missense_Mutation p.S229L 0.36 tolerated(0.11) possibly_damaging(0.885) TCGA-D3-A8GI-06 7 98452921 98452921 C T TMEM130 Missense_Mutation p.G249R 0.41 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GI-06 7 98507696 98507696 C T TRRAP Silent p.F456F 0.45 TCGA-D3-A8GI-06 7 98524820 98524820 C T TRRAP Silent p.I1002I 0.38 TCGA-D3-A8GI-06 7 98601848 98601848 C T TRRAP Missense_Mutation p.H3435Y 0.48 probably_damaging(0.922) TCGA-D3-A8GI-06 7 98606128 98606128 C T TRRAP Missense_Mutation p.R3614C 0.52 probably_damaging(0.985) TCGA-D3-A8GI-06 7 99027295 99027295 G A ATP5J2-PTCD1 Silent p.F292F 0.49 TCGA-D3-A8GI-06 7 99274118 99274118 C T CYP3A5 Intron 0.28 TCGA-D3-A8GI-06 7 99305495 99305495 C T CYP3A7 Missense_Mutation p.M452I 0.33 tolerated(0.26) benign(0.115) TCGA-D3-A8GI-06 7 99711683 99711683 G A TAF6 Silent p.I87I 0.28 TCGA-D3-A8GI-06 8 100832175 100832175 G A VPS13B Missense_Mutation p.S2965N 0.42 deleterious(0.05) benign(0.213) TCGA-D3-A8GI-06 8 100871598 100871598 G A VPS13B Missense_Mutation p.G3670E 0.40 deleterious(0) probably_damaging(0.931) TCGA-D3-A8GI-06 8 101059799 101059799 G A RGS22 Missense_Mutation p.P572L 0.45 tolerated(0.2) benign(0.001) TCGA-D3-A8GI-06 8 101154077 101154077 C T FBXO43 Silent p.K135K 0.47 TCGA-D3-A8GI-06 8 101174504 101174504 C T SPAG1 Intron 0.37 TCGA-D3-A8GI-06 8 101541941 101541941 G A ANKRD46 Missense_Mutation p.R41C 0.42 deleterious(0.03) benign(0.42) TCGA-D3-A8GI-06 8 101586117 101586117 C T SNX31 Silent p.G433G 0.32 TCGA-D3-A8GI-06 8 101625254 101625254 G A SNX31 Silent p.L164L 0.41 TCGA-D3-A8GI-06 8 101661547 101661547 G T SNX31 Silent p.L32L 0.41 TCGA-D3-A8GI-06 8 101725341 101725341 A G PABPC1 Missense_Mutation p.F238L 0.30 deleterious(0.01) benign(0.193) TCGA-D3-A8GI-06 8 101960879 101960879 C T YWHAZ Missense_Mutation p.R80Q 0.40 tolerated_low_confidence(0.1) benign(0.004) TCGA-D3-A8GI-06 8 102381483 102381483 C T NACAP1 RNA 0.41 TCGA-D3-A8GI-06 8 102678922 102678922 G A GRHL2 Missense_Mutation p.M623I 0.47 deleterious(0.01) benign(0.028) TCGA-D3-A8GI-06 8 10387199 10387199 G A PRSS55 Missense_Mutation p.E113K 0.40 deleterious(0.01) possibly_damaging(0.811) TCGA-D3-A8GI-06 8 10388916 10388916 G A PRSS55 Missense_Mutation p.M153I 0.39 deleterious(0.01) possibly_damaging(0.871) TCGA-D3-A8GI-06 8 10468481 10468481 G A RP1L1 Missense_Mutation p.P1043S 0.49 benign(0.29) TCGA-D3-A8GI-06 8 10469710 10469710 G A RP1L1 Missense_Mutation p.S633L 0.45 benign(0.201) TCGA-D3-A8GI-06 8 10480109 10480109 C T RP1L1 Silent p.G201G 0.40 TCGA-D3-A8GI-06 8 10480694 10480694 C T RP1L1 Silent p.R6R 0.35 TCGA-D3-A8GI-06 8 105257255 105257255 G A RIMS2 Missense_Mutation p.G1149D 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.635) TCGA-D3-A8GI-06 8 105260930 105260930 C T RIMS2 Silent p.L1160L 0.42 TCGA-D3-A8GI-06 8 105263946 105263946 C T RIMS2 Silent p.F1316F 0.41 TCGA-D3-A8GI-06 8 105367210 105367210 C T DCSTAMP Missense_Mutation p.P379S 0.44 tolerated(0.31) benign(0.21) TCGA-D3-A8GI-06 8 105393427 105393427 C T DPYS Silent p.%3D 0.48 TCGA-D3-A8GI-06 8 106811108 106811108 C T ZFPM2 Missense_Mutation p.P299L 0.31 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GI-06 8 106815038 106815038 G A ZFPM2 Missense_Mutation p.E910K 0.39 tolerated_low_confidence(0.12) benign(0.116) TCGA-D3-A8GI-06 8 106815593 106815593 C T ZFPM2 Missense_Mutation p.P1095S 0.44 tolerated(0.23) benign(0.002) TCGA-D3-A8GI-06 8 10782156 10782156 C T XKR6 Missense_Mutation p.E317K 0.32 tolerated(0.16) possibly_damaging(0.889) TCGA-D3-A8GI-06 8 108276547 108276547 C T ANGPT1 Missense_Mutation p.G413E 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 108306175 108306175 C T ANGPT1 Missense_Mutation p.E343K 0.34 deleterious(0) benign(0.403) TCGA-D3-A8GI-06 8 108970472 108970472 C T RSPO2 Missense_Mutation p.S151N 0.34 tolerated(0.06) probably_damaging(0.992) TCGA-D3-A8GI-06 8 109001389 109001389 A G RSPO2 Missense_Mutation p.F60L 0.39 deleterious(0) benign(0.332) TCGA-D3-A8GI-06 8 110100160 110100160 C T TRHR Missense_Mutation p.S140F 0.41 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 8 110131592 110131592 G A TRHR Missense_Mutation p.D369N 0.46 tolerated(0.08) benign(0.002) TCGA-D3-A8GI-06 8 110412305 110412305 G A PKHD1L1 Missense_Mutation p.G338E 0.41 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 8 110432784 110432784 A T PKHD1L1 Missense_Mutation p.K854N 0.45 tolerated(0.51) benign(0.021) TCGA-D3-A8GI-06 8 110454332 110454332 G A PKHD1L1 Missense_Mutation p.G1434E 0.34 deleterious(0.04) possibly_damaging(0.548) TCGA-D3-A8GI-06 8 110509479 110509479 C T PKHD1L1 Missense_Mutation p.S3526F 0.77 deleterious(0) possibly_damaging(0.779) TCGA-D3-A8GI-06 8 110984578 110984578 G A KCNV1 Silent p.T300T 0.49 TCGA-D3-A8GI-06 8 110984647 110984647 G A KCNV1 Silent p.I277I 0.45 TCGA-D3-A8GI-06 8 110986219 110986219 G A KCNV1 Silent p.F133F 0.23 TCGA-D3-A8GI-06 8 11163876 11163876 C T MTMR9 Missense_Mutation p.H257Y 0.31 tolerated(0.49) benign(0.008) TCGA-D3-A8GI-06 8 113237032 113237032 G A CSMD3 Missense_Mutation p.P3698S 0.38 tolerated(0.29) possibly_damaging(0.765) TCGA-D3-A8GI-06 8 113299309 113299309 C T CSMD3 Silent p.R3105R 0.44 TCGA-D3-A8GI-06 8 113326685 113326685 C T CSMD3 Missense_Mutation p.E2508K 0.41 tolerated(0.06) probably_damaging(0.973) TCGA-D3-A8GI-06 8 113519026 113519026 C T CSMD3 Missense_Mutation p.G1597S 0.38 deleterious(0.03) probably_damaging(0.989) TCGA-D3-A8GI-06 8 113697867 113697867 C T CSMD3 Silent p.T750T 0.45 TCGA-D3-A8GI-06 8 113812470 113812470 C T CSMD3 Silent p.V631V 0.33 TCGA-D3-A8GI-06 8 113988246 113988246 G A CSMD3 Missense_Mutation p.H388Y 0.38 tolerated(0.54) benign(0.001) TCGA-D3-A8GI-06 8 114111167 114111167 C T CSMD3 Missense_Mutation p.M245I 0.39 tolerated(0.1) benign(0.063) TCGA-D3-A8GI-06 8 114186110 114186110 G A CSMD3 Missense_Mutation p.P184S 0.80 deleterious(0.02) benign(0.266) TCGA-D3-A8GI-06 8 11418929 11418929 G A BLK Missense_Mutation p.R383Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GI-06 8 116631449 116631449 G A TRPS1 Silent p.F292F 0.42 TCGA-D3-A8GI-06 8 11667271 11667271 A T FDFT1 Missense_Mutation p.H98L 0.42 tolerated(0.81) benign(0.009) TCGA-D3-A8GI-06 8 11706605 11706605 C T CTSB Silent p.E132E 0.40 TCGA-D3-A8GI-06 8 117658839 117658839 G A EIF3H Nonsense_Mutation p.Q278* 0.38 TCGA-D3-A8GI-06 8 118159388 118159388 C T SLC30A8 Silent p.V89V 0.35 TCGA-D3-A8GI-06 8 118834776 118834776 G A EXT1 Missense_Mutation p.P449S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 119209783 119209783 C T SAMD12 3'UTR 0.44 TCGA-D3-A8GI-06 8 119209922 119209922 G A SAMD12 3'UTR 0.39 TCGA-D3-A8GI-06 8 119391774 119391774 C T SAMD12 Nonsense_Mutation p.W163* 0.36 TCGA-D3-A8GI-06 8 11994845 11994845 C T USP17L2 Missense_Mutation p.M475I 0.42 tolerated(0.21) benign(0.006) TCGA-D3-A8GI-06 8 120118056 120118056 G A COLEC10 Missense_Mutation p.E154K 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 8 120118343 120118343 G A COLEC10 Silent p.V249V 0.40 TCGA-D3-A8GI-06 8 12045595 12045595 G A FAM86B1 Intron 0.30 TCGA-D3-A8GI-06 8 120629774 120629774 G A ENPP2 Missense_Mutation p.S170F 0.28 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 8 121382583 121382583 C T COL14A1 Intron 0.21 TCGA-D3-A8GI-06 8 121383515 121383515 G A COL14A1 3'UTR 0.44 TCGA-D3-A8GI-06 8 121514756 121514756 C T MTBP Missense_Mutation p.S545F 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A8GI-06 8 121561031 121561031 G A SNTB1 Missense_Mutation p.S435F 0.40 deleterious(0) possibly_damaging(0.498) TCGA-D3-A8GI-06 8 122641021 122641021 C T HAS2 Nonsense_Mutation p.W187* 0.47 TCGA-D3-A8GI-06 8 12285108 12285108 G A FAM86B2 Intron 0.25 TCGA-D3-A8GI-06 8 124253584 124253584 C T C8orf76 Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) benign(0.249) TCGA-D3-A8GI-06 8 124663897 124663897 G A KLHL38 Missense_Mutation p.P424S 0.47 deleterious(0.01) possibly_damaging(0.766) TCGA-D3-A8GI-06 8 124664444 124664444 G A KLHL38 Silent p.L241L 0.46 TCGA-D3-A8GI-06 8 124693550 124693550 G A ANXA13 Missense_Mutation p.S335F 0.48 deleterious(0) probably_damaging(0.929) TCGA-D3-A8GI-06 8 124968237 124968237 G A FER1L6 5'UTR 0.33 TCGA-D3-A8GI-06 8 124968238 124968238 G A FER1L6 5'UTR 0.33 TCGA-D3-A8GI-06 8 125072633 125072633 G A FER1L6 Intron 0.35 TCGA-D3-A8GI-06 8 125072667 125072667 C T FER1L6 Intron 0.35 TCGA-D3-A8GI-06 8 125078672 125078672 C T FER1L6 Missense_Mutation p.P1187S 0.38 tolerated(0.83) benign(0) TCGA-D3-A8GI-06 8 125094573 125094573 C T FER1L6 Missense_Mutation p.S1422F 0.37 deleterious(0) possibly_damaging(0.814) TCGA-D3-A8GI-06 8 125103763 125103763 G A FER1L6 Silent p.G1497G 0.37 TCGA-D3-A8GI-06 8 125103817 125103817 G A FER1L6 Silent p.E1515E 0.50 TCGA-D3-A8GI-06 8 125335611 125335611 G A TMEM65 Silent p.T141T 0.33 TCGA-D3-A8GI-06 8 125339637 125339637 G A TMEM65 Silent p.F125F 0.35 TCGA-D3-A8GI-06 8 125990020 125990020 C T ZNF572 Missense_Mutation p.P504S 0.42 tolerated_low_confidence(0.83) benign(0.015) TCGA-D3-A8GI-06 8 125990090 125990090 C T ZNF572 Missense_Mutation p.S527L 0.28 tolerated_low_confidence(0.23) unknown(0) TCGA-D3-A8GI-06 8 126095967 126095967 G A KIAA0196 Silent p.F58F 0.42 TCGA-D3-A8GI-06 8 126445705 126445705 C T TRIB1 Silent p.S169S 0.36 TCGA-D3-A8GI-06 8 12950130 12950130 G A DLC1 Missense_Mutation p.S1244F 0.55 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 8 132051781 132051781 G A ADCY8 Silent p.L267L 0.38 TCGA-D3-A8GI-06 8 133150203 133150203 C T KCNQ3 Silent p.V543V 0.37 TCGA-D3-A8GI-06 8 133196544 133196544 C T KCNQ3 Missense_Mutation p.R183Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 8 13357102 13357102 G A DLC1 Missense_Mutation p.S160F 0.41 tolerated_low_confidence(0.08) benign(0.006) TCGA-D3-A8GI-06 8 13357695 13357695 C T DLC1 5'UTR 0.37 TCGA-D3-A8GI-06 8 133880370 133880370 G A TG Silent p.V26V 0.46 TCGA-D3-A8GI-06 8 133880371 133880371 G A TG Missense_Mutation p.D27N 0.46 deleterious(0.01) possibly_damaging(0.906) TCGA-D3-A8GI-06 8 134107410 134107410 C T TG Silent p.L2454L 0.43 TCGA-D3-A8GI-06 8 134254306 134254306 G A NDRG1 Silent p.L301L 0.43 TCGA-D3-A8GI-06 8 135614089 135614089 G A ZFAT Nonsense_Mutation p.Q625* 0.34 TCGA-D3-A8GI-06 8 135614967 135614967 G T ZFAT Nonsense_Mutation p.S332* 0.40 TCGA-D3-A8GI-06 8 139190853 139190853 C T FAM135B Nonsense_Mutation p.W318* 0.48 TCGA-D3-A8GI-06 8 139733032 139733032 C T COL22A1 Missense_Mutation p.E769K 0.47 unknown(0) TCGA-D3-A8GI-06 8 139833493 139833493 G A COL22A1 Silent p.S377S 0.28 TCGA-D3-A8GI-06 8 139838905 139838905 G A COL22A1 Missense_Mutation p.P322L 0.27 unknown(0) TCGA-D3-A8GI-06 8 14022146 14022146 G A SGCZ Silent p.L164L 0.29 TCGA-D3-A8GI-06 8 14022181 14022181 C T SGCZ Missense_Mutation p.R152K 0.32 tolerated(0.64) benign(0.015) TCGA-D3-A8GI-06 8 141321463 141321463 A T TRAPPC9 Missense_Mutation p.D600E 0.40 tolerated(1) probably_damaging(0.987) TCGA-D3-A8GI-06 8 14181703 14181703 C T SGCZ Missense_Mutation p.G82E 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 142437077 142437077 G A PTP4A3 Silent p.K79K 0.41 TCGA-D3-A8GI-06 8 142498693 142498693 G A MROH5 3'UTR 0.51 TCGA-D3-A8GI-06 8 143784646 143784646 C T LY6K Missense_Mutation p.R119C 0.49 tolerated(0.06) possibly_damaging(0.847) TCGA-D3-A8GI-06 8 143957688 143957688 G A CYP11B1 Missense_Mutation p.S308F 0.38 tolerated(0.27) probably_damaging(0.913) TCGA-D3-A8GI-06 8 143996629 143996629 C G CYP11B2 Missense_Mutation p.R143P 0.32 tolerated(0.1) probably_damaging(0.922) TCGA-D3-A8GI-06 8 144464732 144464732 C T RHPN1 Nonsense_Mutation p.Q642* 0.35 TCGA-D3-A8GI-06 8 144940274 144940274 G A EPPK1 Missense_Mutation p.T2383I 0.07 benign(0.082) TCGA-D3-A8GI-06 8 144940678 144940678 G A EPPK1 Silent p.A2248A 0.06 TCGA-D3-A8GI-06 8 144946525 144946525 C T EPPK1 Silent p.K299K 0.33 TCGA-D3-A8GI-06 8 144992917 144992917 G A PLEC Missense_Mutation p.S3828F 0.33 probably_damaging(0.953) TCGA-D3-A8GI-06 8 144994298 144994298 G A PLEC Missense_Mutation p.R3368C 0.52 probably_damaging(0.96) TCGA-D3-A8GI-06 8 144995667 144995667 G A PLEC Silent p.V2911V 0.36 TCGA-D3-A8GI-06 8 145049473 145049473 G A PARP10 3'Flank 0.47 TCGA-D3-A8GI-06 8 145662161 145662161 G A TONSL Silent p.S623S 0.41 TCGA-D3-A8GI-06 8 146278263 146278263 C T C8orf33 Missense_Mutation p.P100S 0.61 deleterious(0.05) probably_damaging(0.997) TCGA-D3-A8GI-06 8 15978067 15978067 C T MSR1 Missense_Mutation p.G361E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 16026295 16026295 C T MSR1 Missense_Mutation p.G101E 0.43 tolerated(0.41) benign(0.018) TCGA-D3-A8GI-06 8 16859274 16859274 G A FGF20 Nonsense_Mutation p.Q90* 0.62 TCGA-D3-A8GI-06 8 17159704 17159704 C T MTMR7 Missense_Mutation p.E527K 0.40 tolerated(0.2) probably_damaging(0.98) TCGA-D3-A8GI-06 8 17400905 17400905 C T SLC7A2 Silent p.I59I 0.49 TCGA-D3-A8GI-06 8 19231158 19231158 C T SH2D4A Silent p.A345A 0.23 TCGA-D3-A8GI-06 8 2057230 2057230 G A MYOM2 Missense_Mutation p.G1030R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 21848335 21848335 C T XPO7 Missense_Mutation p.S649L 0.47 deleterious(0.01) benign(0.066) TCGA-D3-A8GI-06 8 22013876 22013876 C T LGI3 Silent p.R60R 0.25 TCGA-D3-A8GI-06 8 22013877 22013877 C T LGI3 Missense_Mutation p.R60K 0.27 tolerated(0.28) benign(0.001) TCGA-D3-A8GI-06 8 22078785 22078785 G A PHYHIP 3'UTR 0.36 TCGA-D3-A8GI-06 8 22140675 22140675 C T PIWIL2 Missense_Mutation p.S185L 0.41 tolerated(0.38) benign(0) TCGA-D3-A8GI-06 8 22429243 22429243 C T SORBS3 Missense_Mutation p.P586S 0.38 tolerated(0.34) benign(0.019) TCGA-D3-A8GI-06 8 22432333 22432333 C T SORBS3 3'UTR 0.32 TCGA-D3-A8GI-06 8 23225916 23225916 G A LOXL2 5'UTR 0.56 TCGA-D3-A8GI-06 8 24167717 24167717 C T ADAM28 Missense_Mutation p.S90F 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A8GI-06 8 24209527 24209527 G A ADAM28 Missense_Mutation p.D736N 0.42 tolerated(0.27) benign(0.081) TCGA-D3-A8GI-06 8 24241995 24241995 G A ADAMDEC1 5'UTR 0.32 TCGA-D3-A8GI-06 8 24251650 24251650 C T ADAMDEC1 Missense_Mutation p.P118L 0.36 tolerated(0.09) benign(0.21) TCGA-D3-A8GI-06 8 24253266 24253266 G A ADAMDEC1 Missense_Mutation p.E133K 0.36 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A8GI-06 8 24253276 24253276 C T ADAMDEC1 Missense_Mutation p.S136F 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 24257779 24257779 C T ADAMDEC1 Missense_Mutation p.P370S 0.43 tolerated(0.19) possibly_damaging(0.467) TCGA-D3-A8GI-06 8 24298620 24298620 G A ADAM7 5'UTR 0.34 TCGA-D3-A8GI-06 8 24321470 24321470 C T ADAM7 Silent p.I103I 0.43 TCGA-D3-A8GI-06 8 24344712 24344712 G A ADAM7 Missense_Mutation p.D325N 0.49 tolerated(0.84) probably_damaging(0.985) TCGA-D3-A8GI-06 8 24346766 24346766 C T ADAM7 Missense_Mutation p.P396S 0.48 tolerated(0.4) benign(0.007) TCGA-D3-A8GI-06 8 24349506 24349506 G A ADAM7 Missense_Mutation p.D483N 0.43 deleterious(0.03) possibly_damaging(0.585) TCGA-D3-A8GI-06 8 24350600 24350600 C T ADAM7 Missense_Mutation p.S567F 0.30 tolerated(0.37) benign(0.076) TCGA-D3-A8GI-06 8 24358371 24358371 C T ADAM7 Missense_Mutation p.R691C 0.47 deleterious(0.02) benign(0.051) TCGA-D3-A8GI-06 8 24775899 24775899 G A NEFM Missense_Mutation p.G844E 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GI-06 8 24811041 24811041 C T CTD-2168K21.2 5'Flank 0.47 TCGA-D3-A8GI-06 8 24813298 24813298 G A CTD-2168K21.2 5'Flank 0.39 TCGA-D3-A8GI-06 8 25318029 25318029 A G CDCA2 Missense_Mutation p.Q64R 0.43 deleterious(0) possibly_damaging(0.904) TCGA-D3-A8GI-06 8 25720261 25720261 G A EBF2 Silent p.I354I 0.47 TCGA-D3-A8GI-06 8 26623663 26623663 C T ADRA1A Intron 0.29 TCGA-D3-A8GI-06 8 26721644 26721644 G A ADRA1A Silent p.F281F 0.47 TCGA-D3-A8GI-06 8 27312122 27312122 G A PTK2B Silent p.R936R 0.42 TCGA-D3-A8GI-06 8 27320916 27320916 G A CHRNA2 Silent p.F348F 0.36 TCGA-D3-A8GI-06 8 27402015 27402015 C T EPHX2 Silent p.N548N 0.44 TCGA-D3-A8GI-06 8 27456039 27456039 C T CLU Silent p.K426K 0.51 TCGA-D3-A8GI-06 8 28209209 28209209 G A ZNF395 Missense_Mutation p.P346S 0.42 tolerated(0.14) benign(0.01) TCGA-D3-A8GI-06 8 28209210 28209210 G A ZNF395 Silent p.V345V 0.42 TCGA-D3-A8GI-06 8 28997604 28997604 G A KIF13B Silent p.T863T 0.31 TCGA-D3-A8GI-06 8 2910074 2910074 C T CSMD1 Missense_Mutation p.G2524S 0.31 probably_damaging(1) TCGA-D3-A8GI-06 8 2967720 2967720 G A CSMD1 Silent p.L2190L 0.54 TCGA-D3-A8GI-06 8 2976018 2976018 G A CSMD1 Silent p.F2111F 0.55 TCGA-D3-A8GI-06 8 30210446 30210446 G A TUBBP1 RNA 0.39 TCGA-D3-A8GI-06 8 30695218 30695218 T G TEX15 Missense_Mutation p.Q2478P 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 8 30695507 30695507 G A TEX15 Missense_Mutation p.H2382Y 0.41 tolerated(1) benign(0.007) TCGA-D3-A8GI-06 8 30700917 30700917 C T TEX15 Missense_Mutation p.E1873K 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.41 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 8 3165910 3165910 G T CSMD1 Silent p.A1249A 0.38 TCGA-D3-A8GI-06 8 3224611 3224611 G A CSMD1 Missense_Mutation p.L1020F 0.35 probably_damaging(1) TCGA-D3-A8GI-06 8 32472036 32472036 C T NRG1 Silent p.I135I 0.46 TCGA-D3-A8GI-06 8 32585514 32585514 G A NRG1 Missense_Mutation p.E184K 0.31 tolerated(0.05) benign(0.333) TCGA-D3-A8GI-06 8 32621395 32621395 G A NRG1 Missense_Mutation p.M471I 0.40 tolerated(0.2) benign(0.055) TCGA-D3-A8GI-06 8 35425613 35425613 C T UNC5D Intron 0.38 TCGA-D3-A8GI-06 8 35584007 35584007 C T UNC5D Silent p.V547V 0.44 TCGA-D3-A8GI-06 8 36642020 36642020 C T KCNU1 Missense_Mutation p.S31F 0.45 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GI-06 8 36793032 36793032 G A KCNU1 Splice_Site p.X1015_splice 0.46 TCGA-D3-A8GI-06 8 37729760 37729760 G A RAB11FIP1 Missense_Mutation p.P854S 0.48 tolerated_low_confidence(0.22) benign(0.002) TCGA-D3-A8GI-06 8 37734680 37734680 T C RAB11FIP1 Missense_Mutation p.Q254R 0.45 tolerated(0.25) possibly_damaging(0.49) TCGA-D3-A8GI-06 8 37796287 37796287 C T GOT1L1 Silent p.L76L 0.33 TCGA-D3-A8GI-06 8 37971754 37971754 C T ASH2L Silent p.T210T 0.32 TCGA-D3-A8GI-06 8 38205606 38205606 G A WHSC1L1 Silent p.I28I 0.46 TCGA-D3-A8GI-06 8 38275779 38275779 G A FGFR1 Missense_Mutation p.P497L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 8 38827105 38827105 C T PLEKHA2 Missense_Mutation p.P361L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GI-06 8 39091502 39091502 C T ADAM32 Silent p.F573F 0.43 TCGA-D3-A8GI-06 8 39442804 39442804 G A ADAM18 Missense_Mutation p.G22E 0.29 tolerated(0.65) benign(0.011) TCGA-D3-A8GI-06 8 39467078 39467078 C T ADAM18 Silent p.L114L 0.47 TCGA-D3-A8GI-06 8 39468298 39468298 G A ADAM18 Intron 0.41 TCGA-D3-A8GI-06 8 39494786 39494786 G A ADAM18 Missense_Mutation p.D198N 0.42 tolerated(0.09) probably_damaging(0.995) TCGA-D3-A8GI-06 8 39537570 39537570 G A ADAM18 Missense_Mutation p.G549E 0.44 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 8 39564360 39564360 G A ADAM18 Missense_Mutation p.D652N 0.40 tolerated(0.34) possibly_damaging(0.672) TCGA-D3-A8GI-06 8 39644506 39644506 C T ADAM2 Missense_Mutation p.G293E 0.30 deleterious(0) possibly_damaging(0.771) TCGA-D3-A8GI-06 8 39645760 39645760 G A ADAM2 Missense_Mutation p.S218L 0.34 deleterious(0.04) benign(0.063) TCGA-D3-A8GI-06 8 39646201 39646201 C T ADAM2 Missense_Mutation p.G210E 0.33 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GI-06 8 39775393 39775393 G A IDO1 Splice_Site p.X30_splice 0.26 TCGA-D3-A8GI-06 8 41542099 41542099 G A ANK1 Silent p.T1541T 0.42 TCGA-D3-A8GI-06 8 41552713 41552713 G A ANK1 Missense_Mutation p.L1074F 0.44 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A8GI-06 8 41566448 41566448 C T ANK1 Missense_Mutation p.E649K 0.36 deleterious(0.02) benign(0.129) TCGA-D3-A8GI-06 8 41584794 41584794 C T ANK1 Missense_Mutation p.G167R 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 41790170 41790170 G A KAT6A Silent p.S1856S 0.24 TCGA-D3-A8GI-06 8 43197399 43197399 G A POTEA RNA 0.39 TCGA-D3-A8GI-06 8 442635 442635 C T TDRP Missense_Mutation p.G108S 0.36 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.39 TCGA-D3-A8GI-06 8 52733090 52733090 G A PCMTD1 Missense_Mutation p.P299S 0.05 tolerated(0.61) benign(0.002) TCGA-D3-A8GI-06 8 52733211 52733211 G A PCMTD1 Silent p.F258F 0.06 TCGA-D3-A8GI-06 8 53074052 53074052 C T ST18 Missense_Mutation p.E493K 0.40 deleterious(0) possibly_damaging(0.794) TCGA-D3-A8GI-06 8 55534018 55534018 G A RP1 Silent p.P164P 0.41 TCGA-D3-A8GI-06 8 55538042 55538042 A G RP1 Missense_Mutation p.K534E 0.40 tolerated(0.23) benign(0.01) TCGA-D3-A8GI-06 8 55538337 55538337 C T RP1 Missense_Mutation p.S632L 0.44 tolerated(0.2) benign(0.037) TCGA-D3-A8GI-06 8 55538491 55538491 C T RP1 Silent p.S683S 0.48 TCGA-D3-A8GI-06 8 55539073 55539073 G A RP1 Silent p.V877V 0.42 TCGA-D3-A8GI-06 8 55539605 55539605 G A RP1 Missense_Mutation p.E1055K 0.50 tolerated(0.1) benign(0.027) TCGA-D3-A8GI-06 8 55540199 55540199 G A RP1 Missense_Mutation p.E1253K 0.43 tolerated(0.12) benign(0.03) TCGA-D3-A8GI-06 8 55540341 55540341 G A RP1 Missense_Mutation p.G1300E 0.42 tolerated(0.18) benign(0.123) TCGA-D3-A8GI-06 8 55540760 55540760 G A RP1 Missense_Mutation p.E1440K 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 8 55541993 55541993 C T RP1 Missense_Mutation p.H1851Y 0.49 tolerated(0.99) benign(0.023) TCGA-D3-A8GI-06 8 55542347 55542347 G A RP1 Missense_Mutation p.E1969K 0.32 deleterious(0.01) benign(0.05) TCGA-D3-A8GI-06 8 55542785 55542785 T G RP1 Missense_Mutation p.L2115V 0.38 tolerated(0.13) benign(0.042) TCGA-D3-A8GI-06 8 55543025 55543025 G A RP1 3'UTR 0.60 TCGA-D3-A8GI-06 8 61654826 61654826 C T CHD7 Missense_Mutation p.P279S 0.47 possibly_damaging(0.641) TCGA-D3-A8GI-06 8 63659593 63659593 A G NKAIN3 Missense_Mutation p.M126V 0.43 tolerated(0.25) benign(0.003) TCGA-D3-A8GI-06 8 65527784 65527784 G A CYP7B1 Missense_Mutation p.H286Y 0.29 deleterious(0.01) benign(0.284) TCGA-D3-A8GI-06 8 67040620 67040620 G A TRIM55 Missense_Mutation p.E84K 0.42 deleterious(0) benign(0.41) TCGA-D3-A8GI-06 8 67047361 67047361 C T TRIM55 Missense_Mutation p.P160S 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GI-06 8 67066475 67066475 C T TRIM55 Missense_Mutation p.S477L 0.58 tolerated_low_confidence(0.24) benign(0.013) TCGA-D3-A8GI-06 8 67089234 67089234 G A CRH Missense_Mutation p.S160F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 67546628 67546628 G A VCPIP1 3'UTR 0.43 TCGA-D3-A8GI-06 8 67589989 67589989 C T C8orf44 Missense_Mutation p.P16S 0.44 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-D3-A8GI-06 8 6793450 6793450 C T DEFA4 3'UTR 0.46 TCGA-D3-A8GI-06 8 6793452 6793452 C T DEFA4 3'UTR 0.31 TCGA-D3-A8GI-06 8 68137197 68137197 G A ARFGEF1 Silent p.F1383F 0.33 TCGA-D3-A8GI-06 8 68396080 68396080 C T CPA6 Missense_Mutation p.R254K 0.36 deleterious(0.01) possibly_damaging(0.745) TCGA-D3-A8GI-06 8 68950456 68950456 T A PREX2 Silent p.S256S 0.49 TCGA-D3-A8GI-06 8 68981282 68981282 C T PREX2 Nonsense_Mutation p.Q452* 0.43 TCGA-D3-A8GI-06 8 68982099 68982099 C T PREX2 Silent p.S491S 0.31 TCGA-D3-A8GI-06 8 68999972 68999972 C T PREX2 Missense_Mutation p.P681S 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GI-06 8 69017390 69017390 G A PREX2 Intron 0.41 TCGA-D3-A8GI-06 8 69017556 69017556 C T PREX2 Intron 0.42 TCGA-D3-A8GI-06 8 69028127 69028127 G A PREX2 Missense_Mutation p.D1096N 0.50 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-D3-A8GI-06 8 69046311 69046311 C T PREX2 Missense_Mutation p.R1262C 0.42 deleterious(0.02) possibly_damaging(0.791) TCGA-D3-A8GI-06 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.40 deleterious(0.01) benign(0.024) TCGA-D3-A8GI-06 8 6914211 6914211 G A DEFA5 Silent p.T3T 0.37 TCGA-D3-A8GI-06 8 70488402 70488402 C T SULF1 Missense_Mutation p.R124W 0.47 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GI-06 8 70978542 70978542 C T PRDM14 Missense_Mutation p.E371K 0.48 tolerated(0.8) possibly_damaging(0.629) TCGA-D3-A8GI-06 8 7340081 7340081 G A DEFB106B 3'UTR 0.38 TCGA-D3-A8GI-06 8 73479887 73479887 G A KCNB2 5'UTR 0.30 TCGA-D3-A8GI-06 8 73479966 73479966 C T KCNB2 5'UTR 0.49 TCGA-D3-A8GI-06 8 73480076 73480076 G A KCNB2 Missense_Mutation p.R36K 0.39 deleterious(0.01) possibly_damaging(0.684) TCGA-D3-A8GI-06 8 73480219 73480219 G A KCNB2 Missense_Mutation p.E84K 0.34 tolerated(0.19) benign(0.009) TCGA-D3-A8GI-06 8 73848946 73848946 G A KCNB2 Missense_Mutation p.M452I 0.47 tolerated(0.25) benign(0.17) TCGA-D3-A8GI-06 8 73849690 73849690 T G KCNB2 Silent p.P700P 0.48 TCGA-D3-A8GI-06 8 73849883 73849883 G A KCNB2 Missense_Mutation p.D765N 0.43 deleterious_low_confidence(0.01) benign(0.06) TCGA-D3-A8GI-06 8 73850027 73850027 G A KCNB2 Missense_Mutation p.E813K 0.53 tolerated_low_confidence(0.16) benign(0.022) TCGA-D3-A8GI-06 8 74233295 74233295 C T RDH10 Silent p.F251F 0.42 TCGA-D3-A8GI-06 8 75276428 75276428 C T GDAP1 Silent p.I301I 0.47 TCGA-D3-A8GI-06 8 75932126 75932126 C T CRISPLD1 Silent p.S383S 0.31 TCGA-D3-A8GI-06 8 76456176 76456176 C T HNF4G Silent p.F73F 0.38 TCGA-D3-A8GI-06 8 76470812 76470812 C T HNF4G Missense_Mutation p.R255C 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 8 77616710 77616710 G A ZFHX4 Silent p.G129G 0.48 TCGA-D3-A8GI-06 8 77618197 77618197 C T ZFHX4 Missense_Mutation p.S625L 0.41 possibly_damaging(0.519) TCGA-D3-A8GI-06 8 77764100 77764100 G A ZFHX4 Missense_Mutation p.G1648E 0.42 probably_damaging(0.969) TCGA-D3-A8GI-06 8 77766887 77766887 C T ZFHX4 Missense_Mutation p.S2577F 0.39 possibly_damaging(0.904) TCGA-D3-A8GI-06 8 77766993 77766993 C T ZFHX4 Silent p.I2612I 0.44 TCGA-D3-A8GI-06 8 77767348 77767348 G A ZFHX4 Missense_Mutation p.D2731N 0.42 probably_damaging(0.915) TCGA-D3-A8GI-06 8 77768369 77768369 C T ZFHX4 Missense_Mutation p.S3071L 0.46 benign(0.365) TCGA-D3-A8GI-06 8 80950377 80950377 G A TPD52 Missense_Mutation p.P217S 0.42 deleterious(0.03) benign(0.031) TCGA-D3-A8GI-06 8 82391698 82391698 C T FABP4 Missense_Mutation p.G100E 0.26 deleterious(0.02) probably_damaging(0.952) TCGA-D3-A8GI-06 8 82441826 82441826 C T FABP12 Silent p.R31R 0.45 TCGA-D3-A8GI-06 8 82615065 82615065 G A ZFAND1 Silent p.A224A 0.37 TCGA-D3-A8GI-06 8 82667692 82667692 G A CHMP4C Silent p.R152R 0.28 TCGA-D3-A8GI-06 8 82670398 82670398 G A CHMP4C Missense_Mutation p.E169K 0.48 deleterious(0.04) possibly_damaging(0.6) TCGA-D3-A8GI-06 8 86245832 86245832 C T CA1 Nonsense_Mutation p.W124* 0.33 TCGA-D3-A8GI-06 8 86351982 86351982 G A CA3 Missense_Mutation p.E26K 0.50 tolerated(0.14) benign(0.063) TCGA-D3-A8GI-06 8 86354376 86354376 C T CA3 Missense_Mutation p.H103Y 0.36 tolerated(0.86) benign(0.027) TCGA-D3-A8GI-06 8 86356331 86356331 C T CA3 Silent p.I140I 0.36 TCGA-D3-A8GI-06 8 87111222 87111222 G A ATP6V0D2 Silent p.A5A 0.35 TCGA-D3-A8GI-06 8 87241988 87241988 G A SLC7A13 Silent p.F173F 0.35 TCGA-D3-A8GI-06 8 87242134 87242134 G A SLC7A13 Missense_Mutation p.P125S 0.50 tolerated(0.51) benign(0.034) TCGA-D3-A8GI-06 8 87656094 87656094 G A CNGB3 Nonsense_Mutation p.R355* 0.39 TCGA-D3-A8GI-06 8 87917361 87917361 C T CNBD1 Missense_Mutation p.P71S 0.25 tolerated(0.12) benign(0.245) TCGA-D3-A8GI-06 8 87951971 87951971 C T CNBD1 Silent p.I140I 0.36 TCGA-D3-A8GI-06 8 88885923 88885923 C T DCAF4L2 Missense_Mutation p.E93K 0.43 tolerated(0.88) benign(0.008) TCGA-D3-A8GI-06 8 89053682 89053682 C T MMP16 3'UTR 0.38 TCGA-D3-A8GI-06 8 89068458 89068458 G A MMP16 Missense_Mutation p.P424L 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 8 89128865 89128865 C T MMP16 Silent p.R318R 0.35 TCGA-D3-A8GI-06 8 90798890 90798890 C T RIPK2 Missense_Mutation p.P367S 0.34 tolerated(0.43) benign(0.009) TCGA-D3-A8GI-06 8 91929734 91929734 C T NECAB1 Silent p.A124A 0.37 TCGA-D3-A8GI-06 8 91929752 91929752 C T NECAB1 Silent p.F130F 0.49 TCGA-D3-A8GI-06 8 92998439 92998439 C T RUNX1T1 Missense_Mutation p.D409N 0.39 deleterious(0.01) possibly_damaging(0.821) TCGA-D3-A8GI-06 8 94777836 94777836 C T TMEM67 Missense_Mutation p.P205S 0.42 tolerated(0.14) benign(0.008) TCGA-D3-A8GI-06 8 95140358 95140358 G A CDH17 3'UTR 0.32 TCGA-D3-A8GI-06 8 95654199 95654199 G A ESRP1 Missense_Mutation p.E50K 0.53 tolerated(0.61) benign(0.004) TCGA-D3-A8GI-06 8 95789953 95789953 C T DPY19L4 Missense_Mutation p.P505L 0.39 tolerated(0.05) benign(0.25) TCGA-D3-A8GI-06 8 98288855 98288855 C T TSPYL5 Missense_Mutation p.M406I 0.44 tolerated(0.06) benign(0) TCGA-D3-A8GI-06 8 98289677 98289677 C T TSPYL5 Silent p.P132P 0.42 TCGA-D3-A8GI-06 9 100689752 100689752 C T HEMGN Missense_Mutation p.E457K 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-D3-A8GI-06 9 100693394 100693394 C T HEMGN Missense_Mutation p.E95K 0.19 tolerated(0.15) possibly_damaging(0.801) TCGA-D3-A8GI-06 9 100840533 100840533 T C NANS Silent p.Y169Y 0.31 TCGA-D3-A8GI-06 9 100890907 100890907 G A CORO2A Silent p.S354S 0.11 TCGA-D3-A8GI-06 9 101340240 101340240 G A GABBR2 Missense_Mutation p.L146F 0.23 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A8GI-06 9 104133245 104133245 G A BAAT Nonsense_Mutation p.R148* 0.60 TCGA-D3-A8GI-06 9 104189870 104189870 A T ALDOB Missense_Mutation p.F145Y 0.42 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GI-06 9 104238300 104238300 C T TMEM246 Missense_Mutation p.G359S 0.52 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 9 104238580 104238580 C T TMEM246 Nonsense_Mutation p.W265* 0.59 TCGA-D3-A8GI-06 9 104385672 104385672 G A GRIN3A Missense_Mutation p.L848F 0.21 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GI-06 9 104433279 104433279 G A GRIN3A Missense_Mutation p.P472L 0.53 tolerated(0.08) probably_damaging(0.962) TCGA-D3-A8GI-06 9 104449322 104449322 G A GRIN3A Missense_Mutation p.S287F 0.59 deleterious(0) benign(0.006) TCGA-D3-A8GI-06 9 1056918 1056918 C T DMRT2 Missense_Mutation p.S444F 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-D3-A8GI-06 9 105763885 105763885 G A CYLC2 Missense_Mutation p.D15N 0.67 deleterious(0.02) possibly_damaging(0.902) TCGA-D3-A8GI-06 9 105767598 105767598 G A CYLC2 Missense_Mutation p.D229N 0.33 deleterious(0.01) unknown(0) TCGA-D3-A8GI-06 9 105767769 105767769 G A CYLC2 Missense_Mutation p.D286N 0.54 tolerated_low_confidence(0.08) unknown(0) TCGA-D3-A8GI-06 9 105768065 105768065 G A CYLC2 3'UTR 0.60 TCGA-D3-A8GI-06 9 106864248 106864248 C T SMC2 Missense_Mutation p.S215L 0.27 deleterious(0.01) benign(0.3) TCGA-D3-A8GI-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.28 TCGA-D3-A8GI-06 9 107361100 107361100 G A OR13C5 Silent p.L199L 0.45 TCGA-D3-A8GI-06 9 107367089 107367089 C T OR13C2 Missense_Mutation p.D274N 0.55 tolerated(0.15) benign(0.006) TCGA-D3-A8GI-06 9 107379931 107379931 C T OR13C9 Missense_Mutation p.M185I 0.53 deleterious(0) benign(0.17) TCGA-D3-A8GI-06 9 107380202 107380202 G A OR13C9 Missense_Mutation p.S95F 0.55 tolerated(0.16) benign(0.004) TCGA-D3-A8GI-06 9 107380205 107380205 A C OR13C9 Missense_Mutation p.F94C 0.56 deleterious(0) possibly_damaging(0.702) TCGA-D3-A8GI-06 9 107380208 107380208 G A OR13C9 Missense_Mutation p.S93F 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GI-06 9 107457492 107457492 G A OR13D1 Missense_Mutation p.E264K 0.55 deleterious(0.02) benign(0.17) TCGA-D3-A8GI-06 9 108424936 108424936 C A TAL2 Missense_Mutation p.F53L 0.18 tolerated(0.16) probably_damaging(0.994) TCGA-D3-A8GI-06 9 109686776 109686776 C T ZNF462 Missense_Mutation p.P195S 0.46 possibly_damaging(0.641) TCGA-D3-A8GI-06 9 111899890 111899890 C T FRRS1L Missense_Mutation p.D294N 0.46 tolerated(0.05) benign(0.064) TCGA-D3-A8GI-06 9 111954581 111954581 C T EPB41L4B Missense_Mutation p.D760N 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D3-A8GI-06 9 111954603 111954603 C T EPB41L4B Silent p.L752L 0.16 TCGA-D3-A8GI-06 9 113171073 113171073 C T SVEP1 Silent p.P2269P 0.15 TCGA-D3-A8GI-06 9 113173867 113173867 T G SVEP1 Missense_Mutation p.I2042L 0.38 benign(0.142) TCGA-D3-A8GI-06 9 113198684 113198684 C T SVEP1 Nonsense_Mutation p.W1580* 0.61 TCGA-D3-A8GI-06 9 113205807 113205807 C T SVEP1 Intron 0.60 TCGA-D3-A8GI-06 9 113205880 113205880 G A SVEP1 Silent p.I1528I 0.62 TCGA-D3-A8GI-06 9 113212415 113212415 C T SVEP1 Missense_Mutation p.G1343R 0.20 benign(0.044) TCGA-D3-A8GI-06 9 113221391 113221391 G A SVEP1 Missense_Mutation p.P1109S 0.59 benign(0.081) TCGA-D3-A8GI-06 9 113312272 113312272 C T SVEP1 Missense_Mutation p.G215E 0.16 probably_damaging(1) TCGA-D3-A8GI-06 9 113550054 113550054 G A MUSK Silent p.A621A 0.69 TCGA-D3-A8GI-06 9 113550055 113550055 G A MUSK Missense_Mutation p.D622N 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 113562718 113562718 C T MUSK Missense_Mutation p.A687V 0.29 tolerated(0.45) benign(0.003) TCGA-D3-A8GI-06 9 114090383 114090383 C T OR2K2 Missense_Mutation p.E111K 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GI-06 9 114538218 114538218 C T C9orf84 Missense_Mutation p.E35K 0.32 tolerated(0.08) possibly_damaging(0.54) TCGA-D3-A8GI-06 9 114886599 114886599 C T SUSD1 Missense_Mutation p.G275E 0.25 tolerated(0.23) possibly_damaging(0.452) TCGA-D3-A8GI-06 9 116059803 116059803 G A RNF183 3'UTR 0.69 TCGA-D3-A8GI-06 9 116080850 116080850 G A WDR31 Missense_Mutation p.S283F 0.56 deleterious(0.01) possibly_damaging(0.798) TCGA-D3-A8GI-06 9 116085403 116085403 G A WDR31 Silent p.F119F 0.44 TCGA-D3-A8GI-06 9 116779029 116779029 C T ZNF618 Missense_Mutation p.P258L 0.50 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GI-06 9 116824985 116824985 T C AMBP Silent p.Q219Q 0.30 TCGA-D3-A8GI-06 9 116824994 116824994 C T AMBP Silent p.G216G 0.43 TCGA-D3-A8GI-06 9 116931626 116931626 C T COL27A1 Silent p.F597F 0.32 TCGA-D3-A8GI-06 9 117008192 117008192 T C COL27A1 Splice_Site p.X993_splice 0.51 TCGA-D3-A8GI-06 9 117052366 117052366 G A COL27A1 Missense_Mutation p.G1412E 0.65 unknown(0) TCGA-D3-A8GI-06 9 117071711 117071711 G A COL27A1 Missense_Mutation p.E1797K 0.25 unknown(0) TCGA-D3-A8GI-06 9 117386690 117386690 C T C9orf91 Missense_Mutation p.S56F 0.55 tolerated(0.05) possibly_damaging(0.898) TCGA-D3-A8GI-06 9 117552965 117552965 C T TNFSF15 Missense_Mutation p.D175N 0.27 tolerated(0.28) benign(0.031) TCGA-D3-A8GI-06 9 117692650 117692650 C T TNFSF8 5'UTR 0.47 TCGA-D3-A8GI-06 9 117848816 117848816 G A TNC Silent p.F398F 0.61 TCGA-D3-A8GI-06 9 118138929 118138929 G A DEC1 5'UTR 0.33 TCGA-D3-A8GI-06 9 118949710 118949710 G A PAPPA Silent p.L231L 0.63 TCGA-D3-A8GI-06 9 118950333 118950333 A T PAPPA Missense_Mutation p.D439V 0.53 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GI-06 9 118969744 118969744 G A PAPPA Silent p.L496L 0.18 TCGA-D3-A8GI-06 9 118969745 118969745 G A PAPPA Missense_Mutation p.D497N 0.17 tolerated(0.12) possibly_damaging(0.539) TCGA-D3-A8GI-06 9 118989729 118989729 C T PAPPA Missense_Mutation p.H711Y 0.51 deleterious(0.02) benign(0) TCGA-D3-A8GI-06 9 119028137 119028137 G A PAPPA Missense_Mutation p.D912N 0.53 tolerated(0.12) benign(0.089) TCGA-D3-A8GI-06 9 119097323 119097323 G A PAPPA Missense_Mutation p.R1194K 0.56 tolerated(0.45) benign(0.067) TCGA-D3-A8GI-06 9 119116027 119116027 C T PAPPA Silent p.F1434F 0.59 TCGA-D3-A8GI-06 9 119159000 119159000 G A PAPPA 3'UTR 0.47 TCGA-D3-A8GI-06 9 120475190 120475190 G A TLR4 Missense_Mutation p.E262K 0.22 deleterious(0.04) possibly_damaging(0.808) TCGA-D3-A8GI-06 9 120476834 120476834 C T TLR4 Nonsense_Mutation p.R810* 0.31 TCGA-D3-A8GI-06 9 122075654 122075654 C T BRINP1 5'UTR 0.34 TCGA-D3-A8GI-06 9 123165109 123165109 G A CDK5RAP2 Missense_Mutation p.S1761F 0.55 tolerated(0.3) benign(0.003) TCGA-D3-A8GI-06 9 123476336 123476336 C T MEGF9 Missense_Mutation p.E101K 0.40 deleterious_low_confidence(0.01) benign(0.063) TCGA-D3-A8GI-06 9 123626370 123626370 G A PHF19 Nonsense_Mutation p.R309* 0.42 TCGA-D3-A8GI-06 9 123937331 123937331 A G CNTRL Silent p.E2261E 0.23 TCGA-D3-A8GI-06 9 124751848 124751848 G A TTLL11 Missense_Mutation p.R389C 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 125154731 125154731 A C PTGS1 Missense_Mutation p.N570H 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 125281731 125281731 C T OR1J4 Silent p.F104F 0.29 TCGA-D3-A8GI-06 9 125281869 125281869 C T OR1J4 Silent p.I150I 0.55 TCGA-D3-A8GI-06 9 125282327 125282327 G A OR1J4 Missense_Mutation p.R303K 0.58 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GI-06 9 125377111 125377111 C T OR1Q1 Missense_Mutation p.S32L 0.34 tolerated(1) benign(0) TCGA-D3-A8GI-06 9 125391017 125391017 G A OR1B1 Silent p.F266F 0.49 TCGA-D3-A8GI-06 9 125424752 125424752 G A OR1L1 Missense_Mutation p.G253E 0.50 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GI-06 9 125486328 125486328 C T OR1L4 Silent p.S20S 0.30 TCGA-D3-A8GI-06 9 125652703 125652703 G A RC3H2 Silent p.S157S 0.29 TCGA-D3-A8GI-06 9 125838980 125838980 C T RABGAP1 Missense_Mutation p.P788L 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 9 126125390 126125390 C T CRB2 Missense_Mutation p.S114F 0.53 deleterious(0) unknown(0) TCGA-D3-A8GI-06 9 126133428 126133428 C T CRB2 Silent p.N669N 0.60 TCGA-D3-A8GI-06 9 126319871 126319871 C T DENND1A Missense_Mutation p.R324Q 0.67 deleterious(0) possibly_damaging(0.775) TCGA-D3-A8GI-06 9 127572430 127572430 G A OLFML2A Nonsense_Mutation p.W566* 0.52 TCGA-D3-A8GI-06 9 127781392 127781392 G A SCAI Silent p.F257F 0.19 TCGA-D3-A8GI-06 9 129458637 129458637 C T LMX1B Silent p.F376F 0.61 TCGA-D3-A8GI-06 9 130206936 130206936 C T ZNF79 Silent p.N319N 0.27 TCGA-D3-A8GI-06 9 130482447 130482447 C T TTC16 Missense_Mutation p.R173C 0.59 deleterious(0.01) possibly_damaging(0.879) TCGA-D3-A8GI-06 9 130488595 130488595 G A TTC16 Missense_Mutation p.R446Q 0.31 deleterious(0) probably_damaging(0.916) TCGA-D3-A8GI-06 9 130551625 130551625 G T CDK9 Missense_Mutation p.D308Y 0.63 deleterious(0.01) possibly_damaging(0.835) TCGA-D3-A8GI-06 9 130656872 130656872 G A ST6GALNAC6 Silent p.S72S 0.50 TCGA-D3-A8GI-06 9 131038495 131038495 C T SWI5 Missense_Mutation p.P24L 0.63 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D3-A8GI-06 9 131186865 131186865 C T CERCAM Silent p.I246I 0.53 TCGA-D3-A8GI-06 9 131513063 131513063 G A ZER1 Silent p.V397V 0.23 TCGA-D3-A8GI-06 9 131599194 131599194 G A CCBL1 Missense_Mutation p.S192F 0.61 deleterious(0) probably_damaging(0.925) TCGA-D3-A8GI-06 9 132862941 132862941 C T GPR107 Missense_Mutation p.P325S 0.53 deleterious(0.02) possibly_damaging(0.771) TCGA-D3-A8GI-06 9 133329718 133329718 C T ASS1 Silent p.F44F 0.18 TCGA-D3-A8GI-06 9 133761000 133761000 C T ABL1 Missense_Mutation p.P1127L 0.48 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 9 134003086 134003086 G A NUP214 Missense_Mutation p.G74E 0.25 unknown(0) TCGA-D3-A8GI-06 9 135277263 135277263 G A TTF1 Silent p.L316L 0.65 TCGA-D3-A8GI-06 9 135447798 135447798 C T C9orf171 Silent p.F288F 0.15 TCGA-D3-A8GI-06 9 135553841 135553841 C T GTF3C4 Missense_Mutation p.L279F 0.53 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A8GI-06 9 136131299 136131299 C T RP11-430N14.4 5'Flank 0.52 TCGA-D3-A8GI-06 9 136131606 136131606 G A RP11-430N14.4 5'Flank 0.46 TCGA-D3-A8GI-06 9 136256553 136256553 G A C9orf96 Nonsense_Mutation p.W188* 0.57 TCGA-D3-A8GI-06 9 136270458 136270458 G A C9orf96 Silent p.V652V 0.50 TCGA-D3-A8GI-06 9 136516814 136516814 G A DBH Missense_Mutation p.G417E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 136577785 136577785 G A SARDH Silent p.I428I 0.38 TCGA-D3-A8GI-06 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.56 benign(0.399) TCGA-D3-A8GI-06 9 137622134 137622134 G A COL5A1 Missense_Mutation p.G326E 0.63 benign(0.056) TCGA-D3-A8GI-06 9 137623401 137623401 G A COL5A1 Silent p.T408T 0.67 TCGA-D3-A8GI-06 9 137666744 137666744 C T COL5A1 Missense_Mutation p.P791S 0.27 unknown(0) TCGA-D3-A8GI-06 9 137702124 137702124 G A COL5A1 Silent p.Q1166Q 0.43 TCGA-D3-A8GI-06 9 137707471 137707471 C T COL5A1 Missense_Mutation p.P1355L 0.67 unknown(0) TCGA-D3-A8GI-06 9 137779176 137779176 G A FCN2 Missense_Mutation p.S286N 0.60 deleterious(0.04) benign(0.075) TCGA-D3-A8GI-06 9 138683963 138683963 C T KCNT1 Silent p.L1222L 0.24 TCGA-D3-A8GI-06 9 139092501 139092501 C T LHX3 Missense_Mutation p.D65N 0.31 deleterious(0) possibly_damaging(0.834) TCGA-D3-A8GI-06 9 139369214 139369214 G A SEC16A Missense_Mutation p.P952S 0.32 tolerated(0.06) benign(0.022) TCGA-D3-A8GI-06 9 139640319 139640319 G A LCN6 Missense_Mutation p.S93F 0.56 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GI-06 9 139658402 139658402 C T LCN15 Silent p.K52K 0.57 TCGA-D3-A8GI-06 9 139693635 139693635 A G CCDC183 Missense_Mutation p.N51S 0.26 tolerated(0.36) benign(0.015) TCGA-D3-A8GI-06 9 139815564 139815564 G A TRAF2 Missense_Mutation p.M345I 0.18 deleterious(0.04) benign(0.005) TCGA-D3-A8GI-06 9 139815565 139815565 G A TRAF2 Missense_Mutation p.E346K 0.18 deleterious(0.01) benign(0.107) TCGA-D3-A8GI-06 9 139846782 139846782 G A LCN12 Translation_Start_Site p.M1? 0.90 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GI-06 9 139926515 139926515 C T C9orf139 5'UTR 0.39 TCGA-D3-A8GI-06 9 140137589 140137589 C T TUBB4B Missense_Mutation p.H307Y 0.24 deleterious_low_confidence(0.02) benign(0.01) TCGA-D3-A8GI-06 9 140356059 140356059 G A PNPLA7 Missense_Mutation p.P1257L 0.43 deleterious(0.02) probably_damaging(0.929) TCGA-D3-A8GI-06 9 14722604 14722604 C T CER1 Missense_Mutation p.G23S 0.51 tolerated(0.46) benign(0.03) TCGA-D3-A8GI-06 9 14722702 14722702 G A CER1 5'UTR 0.41 TCGA-D3-A8GI-06 9 14776175 14776175 G A FREM1 Missense_Mutation p.T1490I 0.50 deleterious(0) possibly_damaging(0.861) TCGA-D3-A8GI-06 9 14789061 14789061 C T FREM1 Missense_Mutation p.E1345K 0.44 deleterious(0.04) benign(0.071) TCGA-D3-A8GI-06 9 14789077 14789077 C T FREM1 Missense_Mutation p.M1339I 0.46 deleterious(0.01) benign(0.041) TCGA-D3-A8GI-06 9 14801660 14801660 G A FREM1 Silent p.L1228L 0.65 TCGA-D3-A8GI-06 9 14819287 14819287 G A FREM1 Missense_Mutation p.P831S 0.22 tolerated(0.09) benign(0.006) TCGA-D3-A8GI-06 9 14824903 14824903 C T FREM1 Missense_Mutation p.E657K 0.43 deleterious(0.03) benign(0.178) TCGA-D3-A8GI-06 9 14842318 14842318 C T FREM1 Silent p.L578L 0.58 TCGA-D3-A8GI-06 9 16436269 16436269 C T BNC2 Silent p.K641K 0.49 TCGA-D3-A8GI-06 9 18777294 18777294 G A ADAMTSL1 Missense_Mutation p.D1023N 0.48 tolerated(0.33) benign(0.002) TCGA-D3-A8GI-06 9 18795402 18795402 C T ADAMTSL1 Silent p.L1229L 0.33 TCGA-D3-A8GI-06 9 18950806 18950806 C T FAM154A Silent p.R56R 0.56 TCGA-D3-A8GI-06 9 19573386 19573386 C T SLC24A2 Missense_Mutation p.G437E 0.33 tolerated(0.34) benign(0.004) TCGA-D3-A8GI-06 9 19597245 19597245 C T SLC24A2 Missense_Mutation p.D371N 0.23 tolerated(0.34) possibly_damaging(0.854) TCGA-D3-A8GI-06 9 2054700 2054700 C T SMARCA2 Missense_Mutation p.R384W 0.62 possibly_damaging(0.689) TCGA-D3-A8GI-06 9 2081846 2081846 A T SMARCA2 Missense_Mutation p.E733D 0.27 benign(0.076) TCGA-D3-A8GI-06 9 21077822 21077822 G A IFNB1 Missense_Mutation p.S16F 0.49 deleterious(0.03) benign(0.092) TCGA-D3-A8GI-06 9 21141561 21141561 G A IFNW1 Silent p.L3L 0.33 TCGA-D3-A8GI-06 9 21187060 21187060 C T IFNA4 Silent p.K157K 0.22 TCGA-D3-A8GI-06 9 21216914 21216914 C T IFNA16 Missense_Mutation p.E131K 0.52 deleterious(0.04) possibly_damaging(0.733) TCGA-D3-A8GI-06 9 21227935 21227935 G A IFNA17 Missense_Mutation p.L80F 0.30 deleterious(0.04) benign(0.18) TCGA-D3-A8GI-06 9 21385100 21385100 G A IFNA2 Missense_Mutation p.P77S 0.31 tolerated(1) benign(0.008) TCGA-D3-A8GI-06 9 27169586 27169586 G A TEK Missense_Mutation p.G196E 0.23 tolerated(0.19) benign(0.095) TCGA-D3-A8GI-06 9 27212770 27212770 C T TEK Missense_Mutation p.R918C 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 27455247 27455247 T A MOB3B Missense_Mutation p.Q101L 0.54 deleterious(0.03) benign(0.081) TCGA-D3-A8GI-06 9 27556740 27556740 G A C9orf72 Missense_Mutation p.P304S 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 9 32630123 32630123 C T TAF1L Missense_Mutation p.E1819K 0.31 benign(0) TCGA-D3-A8GI-06 9 32631333 32631333 C T TAF1L Missense_Mutation p.M1415I 0.28 tolerated(0.24) benign(0.009) TCGA-D3-A8GI-06 9 32631843 32631843 C T TAF1L Silent p.R1245R 0.25 TCGA-D3-A8GI-06 9 32632215 32632215 C T TAF1L Silent p.K1121K 0.60 TCGA-D3-A8GI-06 9 32632791 32632791 G A TAF1L Silent p.A929A 0.30 TCGA-D3-A8GI-06 9 32634932 32634932 C T TAF1L Missense_Mutation p.E216K 0.26 tolerated(0.24) benign(0.184) TCGA-D3-A8GI-06 9 3266259 3266259 A G RFX3 Silent p.G468G 0.46 TCGA-D3-A8GI-06 9 3271043 3271043 G A RFX3 Missense_Mutation p.P388S 0.27 tolerated(0.68) benign(0.01) TCGA-D3-A8GI-06 9 33395094 33395094 C T AQP7 Missense_Mutation p.M42I 0.15 tolerated(0.09) benign(0.004) TCGA-D3-A8GI-06 9 33796723 33796723 G A PRSS3 Silent p.L98L 0.11 TCGA-D3-A8GI-06 9 34661834 34661834 C T IL11RA 3'UTR 0.35 TCGA-D3-A8GI-06 9 34978126 34978126 C T KIAA1045 3'UTR 0.24 TCGA-D3-A8GI-06 9 35045503 35045503 G A C9orf131 Silent p.G959G 0.31 TCGA-D3-A8GI-06 9 35074949 35074949 G A FANCG Silent p.F537F 0.28 TCGA-D3-A8GI-06 9 35398966 35398966 C T UNC13B Silent p.A1254A 0.27 TCGA-D3-A8GI-06 9 35546649 35546649 C T RUSC2 Missense_Mutation p.P44L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GI-06 9 35555448 35555448 C T RUSC2 Silent p.S802S 0.60 TCGA-D3-A8GI-06 9 35650629 35650629 G A SIT1 Missense_Mutation p.P36S 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GI-06 9 35685104 35685104 G C TPM2 Missense_Mutation p.T199S 0.30 tolerated(0.53) benign(0.031) TCGA-D3-A8GI-06 9 35749252 35749252 G A RGP1 5'Flank 0.23 TCGA-D3-A8GI-06 9 35751284 35751284 C T RGP1 Missense_Mutation p.P170L 0.27 tolerated(0.7) benign(0.012) TCGA-D3-A8GI-06 9 35853724 35853724 C T TMEM8B Missense_Mutation p.P436S 0.26 tolerated(0.17) benign(0.003) TCGA-D3-A8GI-06 9 35869856 35869856 G A OR13J1 Silent p.I181I 0.49 TCGA-D3-A8GI-06 9 35957659 35957659 G A OR2S2 Missense_Mutation p.A146V 0.59 deleterious(0.05) possibly_damaging(0.558) TCGA-D3-A8GI-06 9 36169575 36169575 G A CCIN Missense_Mutation p.E26K 0.21 tolerated(0.11) possibly_damaging(0.582) TCGA-D3-A8GI-06 9 36170525 36170525 G A CCIN Silent p.L342L 0.55 TCGA-D3-A8GI-06 9 36665557 36665557 C T MELK Missense_Mutation p.R463C 0.22 tolerated(0.11) benign(0.001) TCGA-D3-A8GI-06 9 37537248 37537248 G A FBXO10 Silent p.S426S 0.23 TCGA-D3-A8GI-06 9 37729841 37729841 C T FRMPD1 Silent p.L243L 0.26 TCGA-D3-A8GI-06 9 37746211 37746211 G A FRMPD1 Silent p.S1394S 0.36 TCGA-D3-A8GI-06 9 3879515 3879515 G A GLIS3 Missense_Mutation p.P737S 0.34 tolerated(0.18) probably_damaging(0.999) TCGA-D3-A8GI-06 9 3898893 3898893 C T GLIS3 Intron 0.17 TCGA-D3-A8GI-06 9 39099907 39099907 C T CNTNAP3 Splice_Site p.X999_splice 0.59 TCGA-D3-A8GI-06 9 39099923 39099923 G A CNTNAP3 Missense_Mutation p.P994S 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 9 39178298 39178298 G A CNTNAP3 Missense_Mutation p.P200S 0.22 tolerated(1) benign(0) TCGA-D3-A8GI-06 9 4118521 4118521 G A GLIS3 Silent p.I319I 0.24 TCGA-D3-A8GI-06 9 4118870 4118870 G A GLIS3 Missense_Mutation p.S203L 0.30 tolerated(0.08) benign(0.009) TCGA-D3-A8GI-06 9 43630573 43630573 G A SPATA31A6 Silent p.L43L 0.47 TCGA-D3-A8GI-06 9 43816725 43816725 C T CNTNAP3B Silent p.I277I 0.15 TCGA-D3-A8GI-06 9 43818176 43818176 C T CNTNAP3B Missense_Mutation p.L355F 0.32 tolerated(0.59) benign(0.003) TCGA-D3-A8GI-06 9 43828160 43828160 C A CNTNAP3B Missense_Mutation p.D472E 0.24 tolerated(0.48) benign(0.044) TCGA-D3-A8GI-06 9 5185566 5185566 C T INSL6 Missense_Mutation p.G13R 1.00 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GI-06 9 5468000 5468000 G A CD274 3'UTR 0.80 TCGA-D3-A8GI-06 9 72521094 72521094 G A C9orf135 3'UTR 0.51 TCGA-D3-A8GI-06 9 74365273 74365273 G A TMEM2 Missense_Mutation p.S6F 0.27 tolerated_low_confidence(0.12) benign(0.057) TCGA-D3-A8GI-06 9 77257725 77257725 G A RORB Missense_Mutation p.E211K 0.62 deleterious(0.03) benign(0.34) TCGA-D3-A8GI-06 9 77277488 77277488 C T RORB Silent p.L286L 0.25 TCGA-D3-A8GI-06 9 77277498 77277498 G A RORB Missense_Mutation p.D290N 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 77376678 77376678 C T TRPM6 Silent p.A1573A 0.30 TCGA-D3-A8GI-06 9 78601099 78601099 G A PCSK5 Missense_Mutation p.D117N 0.27 tolerated(0.2) benign(0.276) TCGA-D3-A8GI-06 9 78784617 78784617 C T PCSK5 Intron 0.33 TCGA-D3-A8GI-06 9 78796404 78796404 G A PCSK5 Silent p.G698G 0.58 TCGA-D3-A8GI-06 9 78953230 78953230 C T PCSK5 Silent p.C1584C 0.28 TCGA-D3-A8GI-06 9 79320793 79320793 C T PRUNE2 Missense_Mutation p.E2133K 0.64 deleterious(0.04) possibly_damaging(0.606) TCGA-D3-A8GI-06 9 79321638 79321638 G A PRUNE2 Missense_Mutation p.S1851F 0.39 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GI-06 9 79323439 79323439 C T PRUNE2 Missense_Mutation p.E1251K 0.22 tolerated(0.05) possibly_damaging(0.848) TCGA-D3-A8GI-06 9 79324474 79324474 G A PRUNE2 Missense_Mutation p.P906S 0.57 tolerated(0.21) benign(0.156) TCGA-D3-A8GI-06 9 79325593 79325593 G A PRUNE2 Missense_Mutation p.P533S 0.35 tolerated(0.81) benign(0.017) TCGA-D3-A8GI-06 9 79326018 79326018 G A PRUNE2 Missense_Mutation p.S391F 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 9 79834911 79834911 C T VPS13A Missense_Mutation p.R266C 0.53 deleterious(0.01) possibly_damaging(0.677) TCGA-D3-A8GI-06 9 79952379 79952379 C T VPS13A Missense_Mutation p.P2102S 0.22 deleterious(0.02) probably_damaging(0.961) TCGA-D3-A8GI-06 9 79955377 79955377 C T VPS13A Missense_Mutation p.P2313S 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 80262736 80262736 G A GNA14 5'UTR 0.67 TCGA-D3-A8GI-06 9 8317926 8317926 G A PTPRD Missense_Mutation p.S1896F 0.48 deleterious(0) possibly_damaging(0.633) TCGA-D3-A8GI-06 9 8319917 8319917 C T PTPRD Missense_Mutation p.E1862K 0.25 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GI-06 9 8389398 8389398 C T PTPRD Missense_Mutation p.G1407E 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 8485953 8485953 G A PTPRD Missense_Mutation p.T955I 0.49 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A8GI-06 9 8486031 8486031 C T PTPRD Missense_Mutation p.G929D 0.44 deleterious(0.02) benign(0.239) TCGA-D3-A8GI-06 9 85615821 85615821 G A RASEF Missense_Mutation p.S476L 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 9 85924511 85924511 G A FRMD3 Missense_Mutation p.S289L 0.52 tolerated(0.08) benign(0.265) TCGA-D3-A8GI-06 9 85950508 85950508 G A FRMD3 Silent p.I173I 0.57 TCGA-D3-A8GI-06 9 87482167 87482167 C T NTRK2 Missense_Mutation p.S485F 0.25 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GI-06 9 90535451 90535451 C T SPATA31C1 RNA 0.56 TCGA-D3-A8GI-06 9 93375416 93375416 G A DIRAS2 3'UTR 0.35 TCGA-D3-A8GI-06 9 93606333 93606333 C T SYK Silent p.F51F 0.53 TCGA-D3-A8GI-06 9 93657814 93657814 G A SYK Missense_Mutation p.E614K 0.32 deleterious(0.01) benign(0.174) TCGA-D3-A8GI-06 9 94486703 94486703 C T ROR2 Silent p.Q691Q 0.20 TCGA-D3-A8GI-06 9 94487337 94487337 C T ROR2 Missense_Mutation p.G480E 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 9 94488913 94488913 C T ROR2 Silent p.Q432Q 0.58 TCGA-D3-A8GI-06 9 94499681 94499681 C T ROR2 Missense_Mutation p.R205Q 0.57 tolerated(0.61) benign(0.065) TCGA-D3-A8GI-06 9 94519751 94519751 G A ROR2 Missense_Mutation p.P89L 0.53 tolerated(0.05) probably_damaging(0.968) TCGA-D3-A8GI-06 9 94991402 94991402 A T IARS Missense_Mutation p.V1097E 0.52 tolerated(0.1) benign(0.142) TCGA-D3-A8GI-06 9 94991403 94991403 C T IARS Missense_Mutation p.V1097I 0.49 tolerated(0.2) benign(0.018) TCGA-D3-A8GI-06 9 95279813 95279813 C T ECM2 Intron 0.47 TCGA-D3-A8GI-06 9 95846868 95846868 G A SUSD3 Missense_Mutation p.D203N 0.30 tolerated(0.14) benign(0.008) TCGA-D3-A8GI-06 9 96051250 96051250 C T WNK2 Missense_Mutation p.T1442I 0.38 unknown(0) TCGA-D3-A8GI-06 9 97084538 97084538 C T NUTM2F Missense_Mutation p.E263K 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GI-06 9 97355988 97355988 G A FBP2 Silent p.F7F 0.47 TCGA-D3-A8GI-06 9 98244161 98244161 G A PTCH1 Intron 0.81 TCGA-D3-A8GI-06 X 100524139 100524139 G A TAF7L 3'UTR 0.96 TCGA-D3-A8GI-06 X 10085396 10085396 C T WWC3 Missense_Mutation p.P433S 0.94 tolerated(0.2) benign(0.343) TCGA-D3-A8GI-06 X 10155617 10155617 G A CLCN4 Silent p.S69S 0.89 TCGA-D3-A8GI-06 X 101818156 101818156 G A NXF4 RNA 0.87 TCGA-D3-A8GI-06 X 102962407 102962407 G A GLRA4 Silent p.F373F 0.92 TCGA-D3-A8GI-06 X 10417537 10417537 G A MID1 Silent p.H625H 0.92 TCGA-D3-A8GI-06 X 105142632 105142632 C T NRK Silent p.F212F 0.83 TCGA-D3-A8GI-06 X 105153489 105153489 C T NRK Missense_Mutation p.S620L 0.92 tolerated(0.45) benign(0.004) TCGA-D3-A8GI-06 X 105178268 105178268 G A NRK Missense_Mutation p.E1112K 0.78 tolerated(0.07) possibly_damaging(0.879) TCGA-D3-A8GI-06 X 106070579 106070579 T C TBC1D8B Intron 0.90 TCGA-D3-A8GI-06 X 106846067 106846067 G A FRMPD3 Missense_Mutation p.E1633K 0.94 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GI-06 X 107160751 107160751 C T MID2 Missense_Mutation p.S406F 0.87 deleterious(0.04) benign(0.429) TCGA-D3-A8GI-06 X 107369304 107369304 C T ATG4A Intron 0.84 TCGA-D3-A8GI-06 X 107911634 107911634 C T COL4A5 Silent p.F1230F 0.85 TCGA-D3-A8GI-06 X 107930867 107930867 G A COL4A5 Missense_Mutation p.E1491K 0.80 possibly_damaging(0.675) TCGA-D3-A8GI-06 X 108636266 108636266 C T GUCY2F Missense_Mutation p.G815R 0.81 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GI-06 X 108784814 108784814 C T NXT2 Silent p.F126F 0.86 TCGA-D3-A8GI-06 X 109697311 109697311 G A RGAG1 Missense_Mutation p.E1156K 0.84 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D3-A8GI-06 X 110654298 110654298 G A DCX 5'UTR 0.92 TCGA-D3-A8GI-06 X 111155789 111155789 G A TRPC5 Silent p.A210A 0.89 TCGA-D3-A8GI-06 X 114082662 114082662 C T HTR2C Missense_Mutation p.S149L 0.81 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GI-06 X 114141364 114141364 G A HTR2C Missense_Mutation p.E255K 0.85 tolerated(0.74) benign(0.002) TCGA-D3-A8GI-06 X 115576203 115576203 C T SLC6A14 Silent p.I258I 0.91 TCGA-D3-A8GI-06 X 117053571 117053571 C T KLHL13 Missense_Mutation p.M164I 0.91 deleterious(0.03) possibly_damaging(0.511) TCGA-D3-A8GI-06 X 117702081 117702081 G A DOCK11 Missense_Mutation p.G331R 0.83 tolerated(0.86) benign(0.219) TCGA-D3-A8GI-06 X 117875092 117875092 T C IL13RA1 Silent p.F67F 0.97 TCGA-D3-A8GI-06 X 117900496 117900496 C T IL13RA1 Nonsense_Mutation p.Q278* 0.92 TCGA-D3-A8GI-06 X 118221227 118221227 C T KIAA1210 Silent p.R1322R 0.87 TCGA-D3-A8GI-06 X 118222259 118222259 C T KIAA1210 Missense_Mutation p.M978I 0.81 tolerated(0.25) benign(0.007) TCGA-D3-A8GI-06 X 118223559 118223559 G A KIAA1210 Missense_Mutation p.S545L 0.84 tolerated(0.42) possibly_damaging(0.707) TCGA-D3-A8GI-06 X 118227726 118227726 C T KIAA1210 Missense_Mutation p.E463K 0.74 tolerated(0.2) benign(0.001) TCGA-D3-A8GI-06 X 119510247 119510247 C T ATP1B4 Missense_Mutation p.R258C 0.89 tolerated(0.14) possibly_damaging(0.697) TCGA-D3-A8GI-06 X 120009264 120009264 G A CT47B1 Silent p.I87I 0.92 TCGA-D3-A8GI-06 X 122488775 122488775 G A GRIA3 Silent p.G237G 0.83 TCGA-D3-A8GI-06 X 123838975 123838975 G A TENM1 Silent p.S301S 0.79 TCGA-D3-A8GI-06 X 12735693 12735693 G A FRMPD4 Missense_Mutation p.M916I 0.87 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A8GI-06 X 12736157 12736157 G A FRMPD4 Missense_Mutation p.R1071Q 0.90 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D3-A8GI-06 X 129518456 129518456 G A GPR119 Silent p.S322S 0.80 TCGA-D3-A8GI-06 X 130215548 130215548 T A ARHGAP36 5'UTR 1.00 TCGA-D3-A8GI-06 X 130410130 130410130 C T IGSF1 Missense_Mutation p.G906S 0.83 tolerated(0.66) benign(0.341) TCGA-D3-A8GI-06 X 130417057 130417057 G A IGSF1 Silent p.F283F 0.93 TCGA-D3-A8GI-06 X 13061909 13061909 C T FAM9C 5'UTR 0.90 TCGA-D3-A8GI-06 X 132352077 132352077 G A TFDP3 Missense_Mutation p.P71S 0.81 tolerated(0.23) benign(0.022) TCGA-D3-A8GI-06 X 134711292 134711292 C T DDX26B Missense_Mutation p.P650S 0.82 tolerated(0.24) benign(0.118) TCGA-D3-A8GI-06 X 135429842 135429842 G A GPR112 Missense_Mutation p.G1326E 0.88 tolerated(0.29) benign(0.004) TCGA-D3-A8GI-06 X 135431667 135431667 C T GPR112 Silent p.V1934V 0.91 TCGA-D3-A8GI-06 X 135433683 135433683 G A GPR112 Missense_Mutation p.E2269K 0.92 tolerated(0.07) benign(0.006) TCGA-D3-A8GI-06 X 135453657 135453657 G A GPR112 Missense_Mutation p.E2523K 0.87 tolerated(0.31) benign(0.212) TCGA-D3-A8GI-06 X 135482149 135482149 C T GPR112 Missense_Mutation p.H2817Y 0.81 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 X 135496322 135496322 G A GPR112 Missense_Mutation p.G3014E 0.81 deleterious(0.04) benign(0.172) TCGA-D3-A8GI-06 X 135570401 135570401 G A BRS3 Missense_Mutation p.G43E 0.93 tolerated(0.07) probably_damaging(0.962) TCGA-D3-A8GI-06 X 135814328 135814328 C T ARHGEF6 Missense_Mutation p.R222K 0.88 tolerated(1) benign(0.001) TCGA-D3-A8GI-06 X 135956211 135956211 C T RBMX 3'UTR 0.57 TCGA-D3-A8GI-06 X 13778438 13778438 C T OFD1 Missense_Mutation p.S620F 0.89 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GI-06 X 138699837 138699837 C T MCF2 Silent p.V338V 0.85 TCGA-D3-A8GI-06 X 139866217 139866217 G A CDR1 Silent p.F105F 0.88 TCGA-D3-A8GI-06 X 140335726 140335726 C T SPANXC Missense_Mutation p.R73Q 0.71 tolerated(0.24) probably_damaging(0.992) TCGA-D3-A8GI-06 X 140786654 140786654 C T SPANXD 5'UTR 0.63 TCGA-D3-A8GI-06 X 140984379 140984379 G A MAGEC3 Intron 0.85 TCGA-D3-A8GI-06 X 140993508 140993508 G A MAGEC1 Silent p.K106K 0.86 TCGA-D3-A8GI-06 X 140994505 140994505 C T MAGEC1 Missense_Mutation p.P439S 0.84 tolerated_low_confidence(0.38) benign(0) TCGA-D3-A8GI-06 X 140996034 140996034 G A MAGEC1 Silent p.V948V 0.85 TCGA-D3-A8GI-06 X 141290768 141290768 C A MAGEC2 Missense_Mutation p.A336S 0.86 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GI-06 X 141290811 141290811 C T MAGEC2 Silent p.L321L 0.89 TCGA-D3-A8GI-06 X 141290979 141290979 G A MAGEC2 Silent p.F265F 0.86 TCGA-D3-A8GI-06 X 141291305 141291305 C T MAGEC2 Missense_Mutation p.E157K 0.85 tolerated(0.63) benign(0.004) TCGA-D3-A8GI-06 X 1471085 1471085 C T IL3RA Missense_Mutation p.P131S 0.79 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GI-06 X 147733571 147733571 G A AFF2 Silent p.R33R 0.89 TCGA-D3-A8GI-06 X 147985831 147985831 G A AFF2 Intron 0.80 TCGA-D3-A8GI-06 X 148578004 148578004 G A IDS Missense_Mutation p.P40L 0.83 tolerated(0.06) benign(0.111) TCGA-D3-A8GI-06 X 148797799 148797799 C T MAGEA11 Missense_Mutation p.S218F 0.82 tolerated(0.83) benign(0.011) TCGA-D3-A8GI-06 X 150348790 150348790 C T GPR50 Silent p.L245L 0.89 TCGA-D3-A8GI-06 X 150828287 150828287 G A PASD1 Missense_Mutation p.D274N 0.88 tolerated(0.08) possibly_damaging(0.548) TCGA-D3-A8GI-06 X 150839650 150839650 G A PASD1 Silent p.L404L 0.83 TCGA-D3-A8GI-06 X 150911876 150911876 G A CNGA2 Missense_Mutation p.G301S 0.88 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 X 151092545 151092545 C - MAGEA4 Frame_Shift_Del p.L137Wfs*14 0.47 TCGA-D3-A8GI-06 X 151092751 151092751 C T MAGEA4 Silent p.I205I 0.81 TCGA-D3-A8GI-06 X 151821101 151821101 C T GABRQ Missense_Mutation p.S419F 0.77 tolerated(0.16) benign(0.056) TCGA-D3-A8GI-06 X 151870281 151870281 C T MAGEA6 3'UTR 0.81 TCGA-D3-A8GI-06 X 152482792 152482792 C T MAGEA1 Silent p.Q73Q 0.88 TCGA-D3-A8GI-06 X 153001695 153001695 C T ABCD1 Missense_Mutation p.S404L 0.81 tolerated(0.2) benign(0.001) TCGA-D3-A8GI-06 X 153001698 153001698 C T ABCD1 Missense_Mutation p.S405L 0.81 deleterious(0.02) benign(0.429) TCGA-D3-A8GI-06 X 153039515 153039515 C T PLXNB3 Missense_Mutation p.P1184S 0.83 deleterious(0.03) probably_damaging(0.953) TCGA-D3-A8GI-06 X 153128061 153128061 G A L1CAM 3'UTR 1.00 TCGA-D3-A8GI-06 X 153221784 153221784 G A HCFC1 Missense_Mutation p.S905F 0.87 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D3-A8GI-06 X 153940658 153940658 G A GAB3 Silent p.S305S 0.89 TCGA-D3-A8GI-06 X 153944442 153944442 C T GAB3 Missense_Mutation p.E79K 0.91 deleterious(0) probably_damaging(0.918) TCGA-D3-A8GI-06 X 154158000 154158000 G A F8 Silent p.T1355T 0.86 TCGA-D3-A8GI-06 X 154158001 154158001 G A F8 Missense_Mutation p.T1355I 0.85 deleterious(0.02) benign(0.312) TCGA-D3-A8GI-06 X 15599482 15599482 G A ACE2 Missense_Mutation p.A311V 0.84 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GI-06 X 205527 205527 C T PLCXD1 Silent p.S85S 0.65 TCGA-D3-A8GI-06 X 22012518 22012518 C T SMS 3'UTR 0.91 TCGA-D3-A8GI-06 X 23018292 23018292 G A DDX53 Missense_Mutation p.G40R 0.86 tolerated(0.35) benign(0.005) TCGA-D3-A8GI-06 X 3002651 3002651 G A ARSF Missense_Mutation p.M258I 0.85 tolerated(0.05) possibly_damaging(0.671) TCGA-D3-A8GI-06 X 30236758 30236758 G A MAGEB2 Missense_Mutation p.E21K 0.90 deleterious(0.05) possibly_damaging(0.83) TCGA-D3-A8GI-06 X 30254251 30254251 C T MAGEB3 Silent p.S70S 0.95 TCGA-D3-A8GI-06 X 31089744 31089744 C T FTHL17 Silent p.K109K 0.88 TCGA-D3-A8GI-06 X 31462652 31462652 T G DMD Silent p.S3010S 0.85 TCGA-D3-A8GI-06 X 3228591 3228591 C T MXRA5 Silent p.K2551K 0.78 TCGA-D3-A8GI-06 X 3228839 3228839 C T MXRA5 Missense_Mutation p.E2469K 0.84 tolerated(0.06) benign(0.425) TCGA-D3-A8GI-06 X 3241355 3241355 G A MXRA5 Missense_Mutation p.R791C 0.82 deleterious(0) possibly_damaging(0.886) TCGA-D3-A8GI-06 X 34148202 34148202 C T FAM47A Missense_Mutation p.D732N 0.87 tolerated(0.18) benign(0.117) TCGA-D3-A8GI-06 X 34149822 34149822 G A FAM47A Missense_Mutation p.P192S 0.93 deleterious(0.01) probably_damaging(0.986) TCGA-D3-A8GI-06 X 34961120 34961120 T G FAM47B Missense_Mutation p.F58V 0.86 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GI-06 X 34961546 34961546 C T FAM47B Missense_Mutation p.R200C 0.80 tolerated(0.13) possibly_damaging(0.854) TCGA-D3-A8GI-06 X 35820435 35820435 C T MAGEB16 Missense_Mutation p.S41F 0.89 tolerated(0.08) benign(0.317) TCGA-D3-A8GI-06 X 37027543 37027543 C T FAM47C Missense_Mutation p.L354F 0.90 deleterious(0.04) possibly_damaging(0.493) TCGA-D3-A8GI-06 X 37027950 37027950 G A FAM47C Silent p.E489E 0.89 TCGA-D3-A8GI-06 X 37029048 37029048 C T FAM47C Silent p.F855F 0.83 TCGA-D3-A8GI-06 X 38240681 38240681 C T OTC Missense_Mutation p.R129C 0.87 deleterious(0) benign(0.285) TCGA-D3-A8GI-06 X 39930267 39930267 G A BCOR Missense_Mutation p.T1066I 0.91 tolerated(0.21) benign(0.013) TCGA-D3-A8GI-06 X 44120367 44120367 G A EFHC2 Missense_Mutation p.P187L 0.85 tolerated(0.12) benign(0.008) TCGA-D3-A8GI-06 X 46522015 46522015 C T SLC9A7 Missense_Mutation p.G286E 0.83 deleterious(0) probably_damaging(1) TCGA-D3-A8GI-06 X 48049627 48049627 C T SSX5 Silent p.G177G 0.81 TCGA-D3-A8GI-06 X 49851297 49851297 C T CLCN5 Missense_Mutation p.P443S 0.96 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GI-06 X 49957491 49957491 C T AKAP4 Missense_Mutation p.D625N 0.88 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GI-06 X 49957942 49957942 C T AKAP4 Missense_Mutation p.M474I 0.85 tolerated(0.38) benign(0.238) TCGA-D3-A8GI-06 X 50031800 50031800 G A CCNB3 Silent p.T39T 0.95 TCGA-D3-A8GI-06 X 50053693 50053693 G A CCNB3 Missense_Mutation p.E842K 0.88 tolerated(0.13) possibly_damaging(0.835) TCGA-D3-A8GI-06 X 50121689 50121689 C T DGKK Intron 0.90 TCGA-D3-A8GI-06 X 50129548 50129548 C T DGKK RNA 0.89 TCGA-D3-A8GI-06 X 50659136 50659136 C T BMP15 Silent p.F236F 0.88 TCGA-D3-A8GI-06 X 55172633 55172633 G A FAM104B Missense_Mutation p.P79S 0.85 tolerated(0.22) probably_damaging(0.996) TCGA-D3-A8GI-06 X 5821296 5821296 G A NLGN4X Missense_Mutation p.H475Y 0.82 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GI-06 X 591659 591659 C T SHOX Silent p.S9S 0.80 TCGA-D3-A8GI-06 X 64708943 64708943 C T ZC3H12B Missense_Mutation p.R88C 0.94 tolerated(0.14) benign(0.004) TCGA-D3-A8GI-06 X 69263406 69263406 G A AWAT2 Missense_Mutation p.P132S 0.87 deleterious(0) possibly_damaging(0.859) TCGA-D3-A8GI-06 X 69615839 69615839 C T KIF4A Missense_Mutation p.S810L 0.92 tolerated(0.24) benign(0.002) TCGA-D3-A8GI-06 X 71359357 71359357 C T NHSL2 Silent p.S653S 0.81 TCGA-D3-A8GI-06 X 71831032 71831032 C T PHKA1 Missense_Mutation p.G791E 0.90 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 X 72674416 72674416 G A CDX4 Missense_Mutation p.E284K 0.82 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GI-06 X 73041502 73041502 C T XIST RNA 0.71 TCGA-D3-A8GI-06 X 73045913 73045913 C A XIST RNA 0.89 TCGA-D3-A8GI-06 X 73046761 73046761 G A XIST RNA 0.89 TCGA-D3-A8GI-06 X 73048820 73048820 C T TSIX RNA 1.00 TCGA-D3-A8GI-06 X 73064369 73064369 C T XIST RNA 0.88 TCGA-D3-A8GI-06 X 73962790 73962790 C T KIAA2022 Silent p.K534K 0.90 TCGA-D3-A8GI-06 X 73963468 73963468 G A KIAA2022 Silent p.C308C 0.81 TCGA-D3-A8GI-06 X 73963843 73963843 C T KIAA2022 Silent p.G183G 0.80 TCGA-D3-A8GI-06 X 75003563 75003563 G A MAGEE2 Missense_Mutation p.R442C 0.82 deleterious(0.01) benign(0) TCGA-D3-A8GI-06 X 75004593 75004593 G A MAGEE2 Silent p.F98F 0.82 TCGA-D3-A8GI-06 X 75650299 75650299 C T MAGEE1 Missense_Mutation p.S659F 0.96 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GI-06 X 77086347 77086347 C T MAGT1 Nonsense_Mutation p.W348* 0.74 TCGA-D3-A8GI-06 X 77913641 77913641 C T ZCCHC5 Missense_Mutation p.D93N 1.00 tolerated_low_confidence(0.14) benign(0.01) TCGA-D3-A8GI-06 X 77913642 77913642 C T ZCCHC5 Silent p.Q92Q 1.00 TCGA-D3-A8GI-06 X 78216114 78216114 C T P2RY10 Nonsense_Mutation p.Q33* 0.69 TCGA-D3-A8GI-06 X 78216144 78216144 C T P2RY10 Missense_Mutation p.L43F 0.72 tolerated(0.14) benign(0.049) TCGA-D3-A8GI-06 X 80532663 80532663 C T SH3BGRL Missense_Mutation p.R76C 0.93 tolerated(1) benign(0.002) TCGA-D3-A8GI-06 X 83359659 83359659 C T RPS6KA6 Missense_Mutation p.D488N 0.93 deleterious(0.01) benign(0.419) TCGA-D3-A8GI-06 X 84525791 84525791 C T ZNF711 Nonsense_Mutation p.Q415* 0.86 TCGA-D3-A8GI-06 X 84526468 84526468 C T ZNF711 Silent p.I640I 0.78 TCGA-D3-A8GI-06 X 84634213 84634213 A T POF1B Missense_Mutation p.S83T 0.87 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-D3-A8GI-06 X 89177246 89177246 G A TGIF2LX Silent p.K54K 0.81 TCGA-D3-A8GI-06 X 92926756 92926756 G A NAP1L3 3'UTR 0.93 TCGA-D3-A8GI-06 X 92964911 92964911 G A FAM133A Missense_Mutation p.D165N 0.83 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GI-06 X 92965076 92965076 G A FAM133A Missense_Mutation p.E220K 0.73 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GI-06 X 96139522 96139522 T A RPA4 Silent p.V71V 0.85 TCGA-D3-A8GI-06 X 99942275 99942275 A G SYTL4 Intron 0.96 TCGA-D3-A8GI-06 X 99956458 99956458 C T SYTL4 Missense_Mutation p.E108K 0.82 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A8GJ-06 10 104416558 104416558 G A TRIM8 Missense_Mutation p.G368D 0.31 tolerated_low_confidence(0.09) benign(0.022) TCGA-D3-A8GJ-06 10 119043032 119043032 G A PDZD8 Missense_Mutation p.S1071L 0.28 tolerated(0.2) benign(0.002) TCGA-D3-A8GJ-06 10 126092416 126092416 G A OAT Missense_Mutation p.P241L 0.23 deleterious(0.02) possibly_damaging(0.856) TCGA-D3-A8GJ-06 10 48382045 48382045 C T RBP3 Missense_Mutation p.D1202N 0.39 tolerated(0.45) possibly_damaging(0.822) TCGA-D3-A8GJ-06 10 91178041 91178041 G A IFIT5 Missense_Mutation p.R362Q 0.07 tolerated(1) benign(0) TCGA-D3-A8GJ-06 10 97402764 97402764 T A ALDH18A1 Silent p.A96A 0.27 TCGA-D3-A8GJ-06 11 118342828 118342828 C T KMT2A Silent p.L318L 0.19 TCGA-D3-A8GJ-06 11 123813896 123813896 G A OR6T1 Missense_Mutation p.S217F 0.32 deleterious(0.05) possibly_damaging(0.801) TCGA-D3-A8GJ-06 11 131240701 131240701 C T NTM 5'UTR 0.19 TCGA-D3-A8GJ-06 11 134151278 134151278 C T GLB1L3 Missense_Mutation p.P124S 0.29 deleterious(0.04) probably_damaging(0.951) TCGA-D3-A8GJ-06 11 4406709 4406709 C T TRIM21 Missense_Mutation p.D412N 0.36 deleterious(0.03) benign(0.35) TCGA-D3-A8GJ-06 11 4673939 4673939 C T OR51E1 Silent p.P61P 0.41 TCGA-D3-A8GJ-06 11 50003295 50003295 A T OR4C12 Missense_Mutation p.F248Y 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.483) TCGA-D3-A8GJ-06 11 5080610 5080610 A T OR52E2 Missense_Mutation p.M83K 0.48 deleterious(0) benign(0.187) TCGA-D3-A8GJ-06 11 5142841 5142841 G T OR52A4 RNA 0.19 TCGA-D3-A8GJ-06 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.20 TCGA-D3-A8GJ-06 11 62066533 62066533 C T SCGB1D4 5'UTR 0.38 TCGA-D3-A8GJ-06 11 62301418 62301418 G A AHNAK Silent p.V157V 0.21 TCGA-D3-A8GJ-06 11 89182688 89182688 G A NOX4 Missense_Mutation p.P90L 0.27 tolerated(0.44) benign(0.008) TCGA-D3-A8GJ-06 12 10954591 10954591 G A TAS2R7 Silent p.P193P 0.15 TCGA-D3-A8GJ-06 12 124228361 124228361 C T ATP6V0A2 Silent p.F356F 0.17 TCGA-D3-A8GJ-06 12 130921696 130921696 G A RIMBP2 Silent p.P582P 0.27 TCGA-D3-A8GJ-06 12 21196410 21196410 G A SLCO1B7 Silent p.R243R 0.14 TCGA-D3-A8GJ-06 12 24985736 24985736 C T BCAT1 Missense_Mutation p.G334E 0.22 tolerated(1) benign(0.001) TCGA-D3-A8GJ-06 12 27127022 27127022 T C TM7SF3 Missense_Mutation p.N530S 0.22 tolerated(0.05) probably_damaging(0.996) TCGA-D3-A8GJ-06 12 49361882 49361882 G A WNT10B Silent p.P186P 0.25 TCGA-D3-A8GJ-06 12 53205636 53205636 C T KRT4 Silent p.R196R 0.20 TCGA-D3-A8GJ-06 12 55421297 55421297 G T NEUROD4 3'UTR 0.17 TCGA-D3-A8GJ-06 12 6204458 6204458 G C VWF Intron 0.43 TCGA-D3-A8GJ-06 12 62148657 62148657 C T FAM19A2 Silent p.V85V 0.14 TCGA-D3-A8GJ-06 12 7177324 7177324 G A C1S Missense_Mutation p.G479E 0.24 tolerated(0.23) benign(0.033) TCGA-D3-A8GJ-06 12 73056955 73056955 G A TRHDE Missense_Mutation p.G1019R 0.24 tolerated(1) benign(0) TCGA-D3-A8GJ-06 13 113803552 113803552 C T F10 Silent p.F396F 0.17 TCGA-D3-A8GJ-06 14 20612685 20612685 C T OR4N5 Missense_Mutation p.A264V 0.20 tolerated(0.07) benign(0.047) TCGA-D3-A8GJ-06 14 23072497 23072497 C T ABHD4 Silent p.F105F 0.23 TCGA-D3-A8GJ-06 14 31604806 31604806 A G HECTD1 Missense_Mutation p.Y1044H 0.22 tolerated(0.16) benign(0.085) TCGA-D3-A8GJ-06 14 33292161 33292161 G A AKAP6 Silent p.S1714S 0.23 TCGA-D3-A8GJ-06 14 50626720 50626720 G A SOS2 Silent p.I427I 0.22 TCGA-D3-A8GJ-06 14 64683070 64683070 C T SYNE2 Missense_Mutation p.P6503S 0.19 possibly_damaging(0.89) TCGA-D3-A8GJ-06 14 68249696 68249696 G A ZFYVE26 Silent p.L1391L 0.27 TCGA-D3-A8GJ-06 14 72128143 72128143 C T SIPA1L1 Silent p.I738I 0.22 TCGA-D3-A8GJ-06 14 73989792 73989792 C T HEATR4 Missense_Mutation p.R22Q 0.18 tolerated_low_confidence(0.12) benign(0.075) TCGA-D3-A8GJ-06 14 94936061 94936061 G A SERPINA9 Silent p.T57T 0.25 TCGA-D3-A8GJ-06 15 100331997 100331997 A T AC090825.1 5'Flank 0.22 TCGA-D3-A8GJ-06 15 20644852 20644852 C T HERC2P3 RNA 0.17 TCGA-D3-A8GJ-06 15 24921299 24921299 G A NPAP1 Silent p.R95R 0.24 TCGA-D3-A8GJ-06 15 25327821 25327821 G A SNORD116-18 5'Flank 0.16 TCGA-D3-A8GJ-06 15 34356163 34356163 G A CHRM5 Silent p.T415T 0.23 TCGA-D3-A8GJ-06 15 43299430 43299430 G A UBR1 Missense_Mutation p.P1088S 0.30 tolerated(0.96) benign(0.01) TCGA-D3-A8GJ-06 15 49054658 49054658 G A CEP152 Missense_Mutation p.A831V 0.25 tolerated(0.06) possibly_damaging(0.803) TCGA-D3-A8GJ-06 15 54306261 54306261 G A UNC13C Silent p.R387R 0.13 TCGA-D3-A8GJ-06 15 54919193 54919193 C T UNC13C Missense_Mutation p.S2176F 0.22 tolerated_low_confidence(0.12) benign(0.007) TCGA-D3-A8GJ-06 15 60649424 60649424 G C ANXA2 Silent p.T141T 0.15 TCGA-D3-A8GJ-06 15 75146933 75146933 G A SCAMP2 Missense_Mutation p.P39S 0.39 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GJ-06 15 87217605 87217605 C T AGBL1 Silent p.L1007L 0.21 TCGA-D3-A8GJ-06 16 1250445 1250445 C A CACNA1H Silent p.G331G 0.38 TCGA-D3-A8GJ-06 16 1818301 1818301 C T MAPK8IP3 Missense_Mutation p.P1221S 0.19 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GJ-06 16 19451432 19451432 C T TMC5 Silent p.N24N 0.20 TCGA-D3-A8GJ-06 16 20451788 20451788 C T ACSM5 3'UTR 0.32 TCGA-D3-A8GJ-06 16 23716388 23716388 C T ERN2 Missense_Mutation p.D272N 0.30 tolerated(0.96) benign(0.205) TCGA-D3-A8GJ-06 16 24183611 24183611 G A PRKCB Missense_Mutation p.M420I 0.34 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GJ-06 16 24366209 24366209 C T CACNG3 Silent p.F117F 0.24 TCGA-D3-A8GJ-06 16 26147551 26147551 G A HS3ST4 Silent p.Q451Q 0.17 TCGA-D3-A8GJ-06 16 29810610 29810610 C T KIF22 Missense_Mutation p.P262L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 16 67964428 67964428 C T CTRL Missense_Mutation p.A128T 0.21 tolerated(0.07) benign(0.109) TCGA-D3-A8GJ-06 16 71418718 71418718 G A CALB2 Silent p.A202A 0.18 TCGA-D3-A8GJ-06 16 7645552 7645552 G A RBFOX1 Missense_Mutation p.G177E 0.31 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GJ-06 16 8988942 8988942 G A USP7 Silent p.F995F 0.37 TCGA-D3-A8GJ-06 17 10402353 10402353 C T MYH1 Missense_Mutation p.G1308S 0.46 tolerated(0.35) benign(0.011) TCGA-D3-A8GJ-06 17 1960069 1960069 G A HIC1 Missense_Mutation p.D48N 0.53 deleterious(0) possibly_damaging(0.831) TCGA-D3-A8GJ-06 17 33954495 33954495 C T AP2B1 Missense_Mutation p.R344C 0.48 deleterious(0.01) benign(0.177) TCGA-D3-A8GJ-06 17 61560891 61560891 C T ACE Missense_Mutation p.H520Y 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 18 25572680 25572680 G A CDH2 Missense_Mutation p.T428I 0.22 tolerated(0.16) possibly_damaging(0.733) TCGA-D3-A8GJ-06 18 28908284 28908284 C T DSG1 Nonsense_Mutation p.R117* 0.20 TCGA-D3-A8GJ-06 18 31537326 31537326 C T NOL4 Silent p.K464K 0.20 TCGA-D3-A8GJ-06 18 40857301 40857301 C T SYT4 5'UTR 0.21 TCGA-D3-A8GJ-06 18 51858132 51858132 C T STARD6 Missense_Mutation p.G122E 0.19 tolerated(0.08) benign(0.195) TCGA-D3-A8GJ-06 18 61449742 61449742 G A SERPINB7 Missense_Mutation p.A46T 0.23 deleterious(0.04) possibly_damaging(0.527) TCGA-D3-A8GJ-06 19 15806788 15806788 G A CYP4F12 Silent p.K386K 0.23 TCGA-D3-A8GJ-06 19 18273271 18273271 G C PIK3R2 Missense_Mutation p.R355P 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 19 18546246 18546246 G A ISYNA1 Silent p.T434T 0.27 TCGA-D3-A8GJ-06 19 18555554 18555554 G A ELL 3'UTR 0.25 TCGA-D3-A8GJ-06 19 2213508 2213508 C T DOT1L Intron 0.14 TCGA-D3-A8GJ-06 19 35793415 35793415 C T MAG Silent p.I345I 0.12 TCGA-D3-A8GJ-06 19 36673615 36673615 G A ZNF565 Missense_Mutation p.P418L 0.21 deleterious(0.02) probably_damaging(0.974) TCGA-D3-A8GJ-06 19 38817957 38817957 C T KCNK6 Missense_Mutation p.R286W 0.20 deleterious(0.02) possibly_damaging(0.724) TCGA-D3-A8GJ-06 19 46283563 46283564 - G DMPK 5'UTR 0.21 TCGA-D3-A8GJ-06 19 49622258 49622258 G A C19orf73 Nonsense_Mutation p.Q8* 0.28 TCGA-D3-A8GJ-06 19 49878142 49878142 C G DKKL1 Missense_Mutation p.R196G 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GJ-06 19 53015351 53015351 G A ZNF578 Missense_Mutation p.G573S 0.24 tolerated(0.05) benign(0.026) TCGA-D3-A8GJ-06 19 55221631 55221631 C T AC098784.2 3'Flank 0.28 TCGA-D3-A8GJ-06 19 56369376 56369376 C T NLRP4 Missense_Mutation p.S206F 0.22 deleterious(0.02) possibly_damaging(0.724) TCGA-D3-A8GJ-06 19 56382301 56382301 C T NLRP4 Silent p.D821D 0.20 TCGA-D3-A8GJ-06 19 56561877 56561877 G A NLRP5 Missense_Mutation p.M1017I 0.23 tolerated(0.18) benign(0.076) TCGA-D3-A8GJ-06 19 57286874 57286874 C T ZIM2 Missense_Mutation p.E256K 0.24 tolerated(0.17) possibly_damaging(0.63) TCGA-D3-A8GJ-06 19 6387514 6387514 G A GTF2F1 Missense_Mutation p.T128I 0.26 deleterious(0.03) benign(0.095) TCGA-D3-A8GJ-06 19 8590433 8590433 C T MYO1F Silent p.K928K 0.29 TCGA-D3-A8GJ-06 19 9070052 9070052 C T MUC16 Silent p.E5798E 0.28 TCGA-D3-A8GJ-06 19 9083349 9083349 G A MUC16 Silent p.N2822N 0.18 TCGA-D3-A8GJ-06 19 9087413 9087413 C T MUC16 Missense_Mutation p.E1468K 0.13 unknown(0) TCGA-D3-A8GJ-06 19 9362431 9362431 A G OR7E24 Missense_Mutation p.K238E 0.22 deleterious(0.01) probably_damaging(0.938) TCGA-D3-A8GJ-06 19 9577889 9577889 C T ZNF560 Silent p.G578G 0.23 TCGA-D3-A8GJ-06 1 10479547 10479547 C T PGD Missense_Mutation p.S428F 0.13 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A8GJ-06 1 110173597 110173597 C T AMPD2 Silent p.T821T 0.19 TCGA-D3-A8GJ-06 1 110255689 110255689 G A GSTM5 Intron 0.16 TCGA-D3-A8GJ-06 1 119936434 119936434 C T HAO2 Nonsense_Mutation p.R343* 0.19 TCGA-D3-A8GJ-06 1 12941808 12941808 G A PRAMEF4 Missense_Mutation p.R248C 0.22 deleterious(0.03) possibly_damaging(0.857) TCGA-D3-A8GJ-06 1 150444947 150444947 C T RPRD2 Nonsense_Mutation p.Q1175* 0.18 TCGA-D3-A8GJ-06 1 155205624 155205624 G A GBA Silent p.Y412Y 0.14 TCGA-D3-A8GJ-06 1 158577107 158577107 G A OR10Z1 Silent p.R293R 0.36 TCGA-D3-A8GJ-06 1 158637802 158637802 C T SPTA1 Silent p.K628K 0.09 TCGA-D3-A8GJ-06 1 159796602 159796602 G A SLAMF8 5'UTR 0.34 TCGA-D3-A8GJ-06 1 167096871 167096871 G A DUSP27 Missense_Mutation p.E835K 0.16 tolerated(1) benign(0.002) TCGA-D3-A8GJ-06 1 176564600 176564600 C T PAPPA2 Silent p.S620S 0.22 TCGA-D3-A8GJ-06 1 19491825 19491825 G C UBR4 Missense_Mutation p.I1410M 0.23 probably_damaging(0.952) TCGA-D3-A8GJ-06 1 196928252 196928252 G A CFHR2 3'UTR 0.32 TCGA-D3-A8GJ-06 1 20981943 20981943 G A DDOST Nonsense_Mutation p.R198* 0.26 TCGA-D3-A8GJ-06 1 215990352 215990352 G A USH2A Missense_Mutation p.S3186F 0.16 possibly_damaging(0.873) TCGA-D3-A8GJ-06 1 220934997 220934997 C T MARC2 Intron 0.20 TCGA-D3-A8GJ-06 1 231830268 231830268 C T DISC1 Missense_Mutation p.P255L 0.11 tolerated(0.16) probably_damaging(0.945) TCGA-D3-A8GJ-06 1 240978016 240978016 C T RGS7 Missense_Mutation p.S282N 0.16 tolerated(0.26) probably_damaging(0.928) TCGA-D3-A8GJ-06 1 248031288 248031288 A G TRIM58 Missense_Mutation p.E265G 0.56 tolerated(0.13) benign(0.013) TCGA-D3-A8GJ-06 1 248814086 248814086 C T OR2T27 Missense_Mutation p.V34I 0.10 tolerated(1) benign(0.002) TCGA-D3-A8GJ-06 1 34667743 34667743 C T C1orf94 Silent p.F443F 0.23 TCGA-D3-A8GJ-06 1 40717294 40717294 G A TMCO2 3'UTR 0.19 TCGA-D3-A8GJ-06 1 52849199 52849199 G A ORC1 Missense_Mutation p.L636F 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GJ-06 1 59978070 59978070 C A FGGY Missense_Mutation p.A253E 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-D3-A8GJ-06 1 6527567 6527567 G A PLEKHG5 3'UTR 0.07 TCGA-D3-A8GJ-06 1 66384439 66384439 G A PDE4B Missense_Mutation p.G68R 0.22 tolerated_low_confidence(0.52) benign(0) TCGA-D3-A8GJ-06 1 7725093 7725093 G A CAMTA1 Missense_Mutation p.G829D 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-D3-A8GJ-06 20 1146862 1146862 C T PSMF1 3'UTR 0.29 TCGA-D3-A8GJ-06 20 29993978 29993978 G A DEFB121 5'UTR 0.17 TCGA-D3-A8GJ-06 20 31607427 31607427 G A BPIFB2 Silent p.K317K 0.14 TCGA-D3-A8GJ-06 20 34797715 34797715 C T EPB41L1 Silent p.S658S 0.33 TCGA-D3-A8GJ-06 20 35506410 35506410 C T TLDC2 Nonsense_Mutation p.Q48* 0.20 TCGA-D3-A8GJ-06 20 43851450 43851450 C T SEMG2 Missense_Mutation p.P393S 0.17 tolerated(0.09) probably_damaging(0.996) TCGA-D3-A8GJ-06 20 9424633 9424633 G A PLCB4 Missense_Mutation p.E912K 0.26 tolerated(0.36) benign(0.002) TCGA-D3-A8GJ-06 20 9434107 9434107 G A PLCB4 Silent p.K986K 0.44 TCGA-D3-A8GJ-06 21 18937911 18937911 G A CXADR Silent p.P333P 0.19 TCGA-D3-A8GJ-06 21 27081751 27081751 A G JAM2 Missense_Mutation p.T271A 0.15 tolerated(0.38) benign(0.005) TCGA-D3-A8GJ-06 21 38536357 38536357 C A TTC3 Silent p.R1059R 0.21 TCGA-D3-A8GJ-06 22 23401747 23401747 G A RTDR1 Missense_Mutation p.P314S 0.19 tolerated(0.55) benign(0.008) TCGA-D3-A8GJ-06 22 24911228 24911228 G A UPB1 Silent p.R227R 0.16 TCGA-D3-A8GJ-06 22 26937063 26937063 G A TPST2 Silent p.F178F 0.27 TCGA-D3-A8GJ-06 22 30951438 30951438 C T GAL3ST1 Silent p.S258S 0.15 TCGA-D3-A8GJ-06 2 100007159 100007159 A G EIF5B Silent p.L913L 0.23 TCGA-D3-A8GJ-06 2 103095434 103095434 C T SLC9A4 Silent p.F131F 0.15 TCGA-D3-A8GJ-06 2 108488640 108488640 C T RGPD4 Missense_Mutation p.R1394C 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 2 11765377 11765377 C T GREB1 Silent p.H1415H 0.21 TCGA-D3-A8GJ-06 2 130914168 130914168 G A SMPD4 Missense_Mutation p.S432L 0.31 deleterious(0) benign(0.001) TCGA-D3-A8GJ-06 2 132290457 132290457 C T CCDC74A Silent p.L299L 0.23 TCGA-D3-A8GJ-06 2 135738391 135738391 C T MAP3K19 Missense_Mutation p.R1307K 0.24 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A8GJ-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.22 deleterious(0.02) possibly_damaging(0.486) TCGA-D3-A8GJ-06 2 137917929 137917929 G A THSD7B Missense_Mutation p.G506R 0.15 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GJ-06 2 158142586 158142586 C T GALNT5 Missense_Mutation p.R561C 0.15 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GJ-06 2 166627043 166627043 C T GALNT3 Missense_Mutation p.M56I 0.15 tolerated(0.1) benign(0.001) TCGA-D3-A8GJ-06 2 175666437 175666437 C A CHN1 Missense_Mutation p.K402N 0.16 tolerated(0.35) possibly_damaging(0.79) TCGA-D3-A8GJ-06 2 179436766 179436766 C T TTN Missense_Mutation p.S24698N 0.14 TCGA-D3-A8GJ-06 2 179589085 179589085 C T TTN Missense_Mutation p.R7006K 0.27 TCGA-D3-A8GJ-06 2 179613389 179613389 G A TTN Intron 0.15 TCGA-D3-A8GJ-06 2 179616586 179616586 T G TTN Intron 0.22 TCGA-D3-A8GJ-06 2 182409501 182409501 G A CERKL Missense_Mutation p.L457F 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 2 202611311 202611311 G A ALS2 Missense_Mutation p.P659L 0.25 deleterious(0) benign(0.189) TCGA-D3-A8GJ-06 2 204355994 204355994 G A RAPH1 Missense_Mutation p.R57C 0.17 probably_damaging(0.985) TCGA-D3-A8GJ-06 2 217142519 217142519 G A MARCH4 Silent p.F247F 0.20 TCGA-D3-A8GJ-06 2 220100194 220100194 A G ANKZF1 Splice_Site p.X564_splice 0.13 TCGA-D3-A8GJ-06 2 27887996 27887996 C T SLC4A1AP Silent p.S285S 0.24 TCGA-D3-A8GJ-06 2 28826871 28826871 C T PLB1 Missense_Mutation p.S938F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GJ-06 2 28999786 28999786 C A PPP1CB Missense_Mutation p.S41Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-D3-A8GJ-06 2 95940429 95940429 C T PROM2 Silent p.F32F 0.13 TCGA-D3-A8GJ-06 3 108363375 108363375 C A DZIP3 Silent p.I502I 0.18 TCGA-D3-A8GJ-06 3 11301449 11301449 G A HRH1 Silent p.E242E 0.20 TCGA-D3-A8GJ-06 3 121631911 121631911 G A SLC15A2 Missense_Mutation p.G158R 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 3 121838459 121838459 C T CD86 3'UTR 0.18 TCGA-D3-A8GJ-06 3 124209704 124209704 G A KALRN Silent p.T1518T 0.23 TCGA-D3-A8GJ-06 3 124449230 124449230 G A UMPS 5'UTR 0.16 TCGA-D3-A8GJ-06 3 124449231 124449231 G A UMPS 5'UTR 0.16 TCGA-D3-A8GJ-06 3 128348820 128348820 G A RPN1 Missense_Mutation p.P337L 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GJ-06 3 133474301 133474301 C T TF Silent p.S199S 0.27 TCGA-D3-A8GJ-06 3 142416798 142416798 C T PLS1 Silent p.D420D 0.27 TCGA-D3-A8GJ-06 3 156867675 156867675 C T CCNL1 Missense_Mutation p.G324E 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GJ-06 3 16633639 16633639 C A DAZL Missense_Mutation p.S271I 0.14 deleterious(0.01) possibly_damaging(0.796) TCGA-D3-A8GJ-06 3 184042684 184042684 C T EIF4G1 Silent p.L887L 0.20 TCGA-D3-A8GJ-06 3 185404916 185404916 G A IGF2BP2 Silent p.T247T 0.21 TCGA-D3-A8GJ-06 3 33450287 33450287 C T UBP1 Missense_Mutation p.M274I 0.17 tolerated(0.89) benign(0.02) TCGA-D3-A8GJ-06 3 36896784 36896784 G A TRANK1 Missense_Mutation p.R1433C 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 3 38743337 38743337 G A SCN10A Silent p.S1550S 0.18 TCGA-D3-A8GJ-06 3 38945527 38945527 C T SCN11A Nonsense_Mutation p.W557* 0.16 TCGA-D3-A8GJ-06 4 100266053 100266053 G A ADH1C Missense_Mutation p.S178L 0.21 possibly_damaging(0.464) TCGA-D3-A8GJ-06 4 100341744 100341744 C T ADH7 Missense_Mutation p.M277I 0.23 deleterious(0.03) probably_damaging(0.915) TCGA-D3-A8GJ-06 4 115997751 115997751 C T NDST4 Missense_Mutation p.E148K 0.15 deleterious(0.05) benign(0.308) TCGA-D3-A8GJ-06 4 138452163 138452163 G A PCDH18 Silent p.S360S 0.17 TCGA-D3-A8GJ-06 4 145573932 145573932 G A HHIP Missense_Mutation p.C152Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GJ-06 4 151836871 151836871 C T LRBA Missense_Mutation p.M301I 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GJ-06 4 160253825 160253825 G A RAPGEF2 Missense_Mutation p.S543N 0.18 tolerated(0.31) benign(0.299) TCGA-D3-A8GJ-06 4 1730496 1730496 C T TACC3 Missense_Mutation p.P456L 0.34 tolerated(0.53) benign(0.004) TCGA-D3-A8GJ-06 4 187178415 187178415 C T KLKB1 Missense_Mutation p.P541S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GJ-06 4 189060955 189060955 C T TRIML1 Silent p.L81L 0.10 TCGA-D3-A8GJ-06 4 20736327 20736327 C T KCNIP4 Missense_Mutation p.R154Q 0.19 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GJ-06 4 42122284 42122284 G A BEND4 Missense_Mutation p.P392S 0.21 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-D3-A8GJ-06 4 43032429 43032429 C T GRXCR1 Missense_Mutation p.P249S 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A8GJ-06 4 46086014 46086014 G A GABRG1 Missense_Mutation p.P104S 0.19 tolerated(0.74) probably_damaging(0.999) TCGA-D3-A8GJ-06 4 47853958 47853958 T A NFXL1 Missense_Mutation p.E808V 0.27 deleterious(0) possibly_damaging(0.791) TCGA-D3-A8GJ-06 4 62363067 62363067 G A LPHN3 Splice_Site p.X19_splice 0.27 TCGA-D3-A8GJ-06 4 65275145 65275145 A G TECRL 5'UTR 0.32 TCGA-D3-A8GJ-06 4 69973975 69973975 G A UGT2B7 Silent p.V415V 0.20 TCGA-D3-A8GJ-06 4 71509277 71509277 G A ENAM Missense_Mutation p.E712K 0.21 deleterious(0.04) benign(0.315) TCGA-D3-A8GJ-06 4 74702512 74702512 G A CXCL6 Silent p.S15S 0.31 TCGA-D3-A8GJ-06 4 88533861 88533861 G A DSPP Missense_Mutation p.D175N 0.28 benign(0.091) TCGA-D3-A8GJ-06 4 95223395 95223395 C T HPGDS Missense_Mutation p.E113K 0.26 tolerated(0.26) benign(0.001) TCGA-D3-A8GJ-06 5 125808996 125808996 G A GRAMD3 Missense_Mutation p.G156E 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 5 162012 162012 G A PLEKHG4B Missense_Mutation p.E512K 0.47 tolerated(0.81) benign(0.002) TCGA-D3-A8GJ-06 5 167986054 167986054 A C PANK3 Missense_Mutation p.L349V 0.47 deleterious(0.01) possibly_damaging(0.631) TCGA-D3-A8GJ-06 5 19747280 19747280 C T CDH18 Silent p.G98G 0.41 TCGA-D3-A8GJ-06 5 42719426 42719426 G A GHR Missense_Mutation p.G606D 0.28 deleterious(0.02) probably_damaging(0.951) TCGA-D3-A8GJ-06 5 79026237 79026237 A G CMYA5 Missense_Mutation p.H550R 0.31 benign(0) TCGA-D3-A8GJ-06 5 89940645 89940645 G A GPR98 Missense_Mutation p.E953K 0.39 possibly_damaging(0.636) TCGA-D3-A8GJ-06 6 12123669 12123669 C T HIVEP1 Missense_Mutation p.P1214L 0.37 tolerated(0.06) benign(0.003) TCGA-D3-A8GJ-06 6 129774249 129774249 C T LAMA2 Silent p.L2182L 0.42 TCGA-D3-A8GJ-06 6 168352249 168352249 G A MLLT4 Silent p.G1398G 0.52 TCGA-D3-A8GJ-06 6 27879649 27879649 A C OR2B2 Missense_Mutation p.I150S 0.16 deleterious(0.01) benign(0.315) TCGA-D3-A8GJ-06 6 28483568 28483568 T C GPX6 5'UTR 0.25 TCGA-D3-A8GJ-06 6 2890463 2890463 G A SERPINB9 Silent p.F355F 0.40 TCGA-D3-A8GJ-06 6 31962484 31962484 G A C4A Silent p.E934E 0.12 TCGA-D3-A8GJ-06 6 33052830 33052830 C T HLA-DPB1 Silent p.V156V 0.18 TCGA-D3-A8GJ-06 6 54173647 54173647 C G TINAG Missense_Mutation p.S100C 0.19 deleterious(0.02) possibly_damaging(0.8) TCGA-D3-A8GJ-06 6 74072867 74072867 G A KHDC3L Silent p.L73L 0.25 TCGA-D3-A8GJ-06 6 87725109 87725109 C T HTR1E Silent p.I19I 0.49 TCGA-D3-A8GJ-06 6 88854296 88854296 G A CNR1 Missense_Mutation p.A233V 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 7 100677643 100677643 G A MUC17 Silent p.T982T 0.26 TCGA-D3-A8GJ-06 7 101559469 101559469 C T CUX1 Silent p.I46I 0.18 TCGA-D3-A8GJ-06 7 103137078 103137078 C T RELN Missense_Mutation p.G3030R 0.22 tolerated(0.06) probably_damaging(0.958) TCGA-D3-A8GJ-06 7 107423747 107423747 C T SLC26A3 Missense_Mutation p.G341E 0.20 tolerated(0.72) probably_damaging(0.939) TCGA-D3-A8GJ-06 7 123302640 123302640 C T LMOD2 Missense_Mutation p.H334Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GJ-06 7 123514872 123514872 A G HYAL4 Missense_Mutation p.I338V 0.12 tolerated(0.12) benign(0.09) TCGA-D3-A8GJ-06 7 127239479 127239479 C T FSCN3 Missense_Mutation p.L389F 0.15 deleterious(0) possibly_damaging(0.807) TCGA-D3-A8GJ-06 7 134896287 134896287 G A WDR91 5'Flank 0.23 TCGA-D3-A8GJ-06 7 135047787 135047787 G A CNOT4 Silent p.I664I 0.18 TCGA-D3-A8GJ-06 7 139829366 139829366 G A KDM7A Silent p.V162V 0.22 TCGA-D3-A8GJ-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GJ-06 7 142564345 142564345 C T EPHB6 Silent p.L523L 0.26 TCGA-D3-A8GJ-06 7 142564346 142564346 C T EPHB6 Missense_Mutation p.R524C 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GJ-06 7 151853340 151853340 G C KMT2C Missense_Mutation p.A3921G 0.23 probably_damaging(0.997) TCGA-D3-A8GJ-06 7 26246121 26246121 G A CBX3 Missense_Mutation p.G53E 0.17 deleterious(0.03) possibly_damaging(0.489) TCGA-D3-A8GJ-06 7 2985590 2985590 C T CARD11 Missense_Mutation p.G74D 0.21 deleterious(0) possibly_damaging(0.882) TCGA-D3-A8GJ-06 7 2985591 2985591 C T CARD11 Splice_Site p.X74_splice 0.21 TCGA-D3-A8GJ-06 7 36616230 36616230 C T AOAH Nonsense_Mutation p.W324* 0.18 TCGA-D3-A8GJ-06 7 4304885 4304885 G A SDK1 Missense_Mutation p.E2171K 0.19 deleterious(0.02) benign(0.158) TCGA-D3-A8GJ-06 7 64438527 64438527 T A ZNF117 Missense_Mutation p.K474N 0.25 deleterious(0.01) possibly_damaging(0.708) TCGA-D3-A8GJ-06 7 82388008 82388008 C T PCLO Silent p.G5104G 0.17 TCGA-D3-A8GJ-06 7 88966077 88966077 A T ZNF804B Missense_Mutation p.T1261S 0.22 tolerated(0.07) possibly_damaging(0.744) TCGA-D3-A8GJ-06 8 122641038 122641038 G A HAS2 Silent p.I181I 0.28 TCGA-D3-A8GJ-06 8 135669827 135669827 G A ZFAT Missense_Mutation p.P58L 0.10 tolerated(0.53) benign(0.006) TCGA-D3-A8GJ-06 8 140630580 140630580 G A KCNK9 Missense_Mutation p.S349L 0.22 deleterious(0) possibly_damaging(0.755) TCGA-D3-A8GJ-06 8 24167717 24167717 C T ADAM28 Missense_Mutation p.S90F 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A8GJ-06 8 39080677 39080677 C T ADAM32 Missense_Mutation p.S482L 0.27 tolerated(0.39) benign(0.002) TCGA-D3-A8GJ-06 8 42977749 42977749 C T POMK Missense_Mutation p.P261L 0.21 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GJ-06 8 55539605 55539605 G A RP1 Missense_Mutation p.E1055K 0.45 tolerated(0.1) benign(0.027) TCGA-D3-A8GJ-06 8 62415817 62415817 G A ASPH 3'UTR 0.26 TCGA-D3-A8GJ-06 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.36 TCGA-D3-A8GJ-06 8 95272526 95272526 G A GEM Missense_Mutation p.S69F 0.23 deleterious(0.01) benign(0.276) TCGA-D3-A8GJ-06 8 99116755 99116755 G A HRSP12 Missense_Mutation p.P105S 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GJ-06 9 117266708 117266708 G A DFNB31 Missense_Mutation p.P125L 0.28 tolerated(0.06) benign(0.008) TCGA-D3-A8GJ-06 9 117552753 117552753 G A TNFSF15 Silent p.F245F 0.16 TCGA-D3-A8GJ-06 9 125486740 125486740 C T OR1L4 Silent p.L158L 0.12 TCGA-D3-A8GJ-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GJ-06 9 14722347 14722347 C T CER1 Silent p.G108G 0.32 TCGA-D3-A8GJ-06 9 32630224 32630224 G A TAF1L Missense_Mutation p.P1785L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D3-A8GJ-06 9 32632800 32632800 G A TAF1L Silent p.S926S 0.22 TCGA-D3-A8GJ-06 X 18219951 18219951 G A BEND2 Silent p.F339F 0.40 TCGA-D3-A8GJ-06 X 322194 322194 G A PPP2R3B Silent p.F152F 0.22 TCGA-D3-A8GJ-06 X 47445988 47445988 C T TIMP1 Silent p.L174L 0.52 TCGA-D3-A8GJ-06 X 77913642 77913642 C T ZCCHC5 Silent p.Q92Q 0.45 TCGA-D3-A8GK-06 10 102896743 102896743 C T TLX1 3'UTR 0.53 TCGA-D3-A8GK-06 10 104122231 104122231 G A GBF1 Splice_Site p.X562_splice 0.38 TCGA-D3-A8GK-06 10 11504824 11504824 G A USP6NL Silent p.L718L 0.56 TCGA-D3-A8GK-06 10 118425324 118425324 G A C10orf82 Silent p.F23F 0.50 TCGA-D3-A8GK-06 10 123843666 123843666 G A TACC2 Missense_Mutation p.D551N 0.54 benign(0.166) TCGA-D3-A8GK-06 10 123843670 123843670 G A TACC2 Missense_Mutation p.G552E 0.41 benign(0.015) TCGA-D3-A8GK-06 10 124594266 124594266 G A CUZD1 Silent p.P446P 0.63 TCGA-D3-A8GK-06 10 125514184 125514184 C T CPXM2 Missense_Mutation p.R671Q 0.41 tolerated(0.07) benign(0.12) TCGA-D3-A8GK-06 10 129536804 129536804 C T FOXI2 Silent p.L178L 0.35 TCGA-D3-A8GK-06 10 133967467 133967467 G A JAKMIP3 Silent p.R729R 0.44 TCGA-D3-A8GK-06 10 134166395 134166395 C T LRRC27 Intron 0.36 TCGA-D3-A8GK-06 10 27538010 27538010 T C RP11-85G18.6 Intron 0.40 TCGA-D3-A8GK-06 10 27687295 27687295 G A PTCHD3 Silent p.I744I 0.43 TCGA-D3-A8GK-06 10 28233759 28233759 C T ARMC4 Missense_Mutation p.E507K 0.50 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GK-06 10 30658083 30658083 A T AL161651.1 5'Flank 0.61 TCGA-D3-A8GK-06 10 34400167 34400167 G A PARD3 Missense_Mutation p.P1334L 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GK-06 10 34400168 34400168 G A PARD3 Missense_Mutation p.P1334S 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GK-06 10 37505199 37505199 G A ANKRD30A Missense_Mutation p.G931E 0.42 tolerated(0.76) benign(0.003) TCGA-D3-A8GK-06 10 37506705 37506705 G A ANKRD30A Missense_Mutation p.E1000K 0.46 tolerated(0.28) benign(0.001) TCGA-D3-A8GK-06 10 43697298 43697298 G A RASGEF1A Silent p.A139A 0.43 TCGA-D3-A8GK-06 10 4884655 4884656 CC T AKR1E2 Frame_Shift_Del p.P266Sfs*20 0.33 TCGA-D3-A8GK-06 10 52103484 52103484 C T SGMS1 Missense_Mutation p.E131K 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GK-06 10 5437330 5437330 G A TUBAL3 Missense_Mutation p.S119L 0.62 deleterious_low_confidence(0) benign(0.123) TCGA-D3-A8GK-06 10 55582574 55582574 C T PCDH15 Missense_Mutation p.E1640K 0.46 tolerated_low_confidence(0.13) benign(0.001) TCGA-D3-A8GK-06 10 61012698 61012698 C T FAM13C Missense_Mutation p.D465N 0.31 tolerated(0.34) benign(0.007) TCGA-D3-A8GK-06 10 61028437 61028437 G A FAM13C Missense_Mutation p.S273L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GK-06 10 61833305 61833305 G T ANK3 Nonsense_Mutation p.S2445* 0.46 TCGA-D3-A8GK-06 10 61834479 61834479 C T ANK3 Missense_Mutation p.E2054K 0.47 probably_damaging(0.956) TCGA-D3-A8GK-06 10 71880309 71880309 C T AIFM2 Missense_Mutation p.G154E 0.42 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 10 73577183 73577183 G A PSAP 3'UTR 0.40 TCGA-D3-A8GK-06 10 75519875 75519875 A G SEC24C Missense_Mutation p.Q194R 0.05 tolerated(0.12) possibly_damaging(0.624) TCGA-D3-A8GK-06 10 75530499 75530499 C T SEC24C Silent p.S1029S 0.44 TCGA-D3-A8GK-06 10 75543029 75543029 C T CHCHD1 3'UTR 0.78 TCGA-D3-A8GK-06 10 82098126 82098126 C T DYDC1 Intron 0.53 TCGA-D3-A8GK-06 10 85981653 85981653 T A LRIT2 3'UTR 0.54 TCGA-D3-A8GK-06 10 91196067 91196067 C T SLC16A12 Silent p.K346K 0.42 TCGA-D3-A8GK-06 10 97607208 97607208 A C ENTPD1 Silent p.A285A 0.45 TCGA-D3-A8GK-06 11 102401335 102401335 C T MMP7 Missense_Mutation p.E33K 0.41 tolerated(0.46) benign(0.015) TCGA-D3-A8GK-06 11 10785910 10785910 C T CTR9 Missense_Mutation p.A447V 0.47 tolerated(0.95) probably_damaging(0.968) TCGA-D3-A8GK-06 11 111338299 111338299 G A BTG4 3'UTR 0.50 TCGA-D3-A8GK-06 11 111749896 111749896 C T FDXACB1 5'UTR 0.47 TCGA-D3-A8GK-06 11 116692235 116692235 C T APOA4 Missense_Mutation p.R180K 0.38 tolerated(0.39) benign(0) TCGA-D3-A8GK-06 11 116728937 116728937 G A SIK3 Missense_Mutation p.L976F 0.53 deleterious_low_confidence(0.02) benign(0.236) TCGA-D3-A8GK-06 11 117301515 117301515 G A DSCAML1 Missense_Mutation p.T1930I 0.43 deleterious(0) probably_damaging(0.923) TCGA-D3-A8GK-06 11 118106268 118106268 G A MPZL3 Missense_Mutation p.S163F 0.52 tolerated(0.15) probably_damaging(0.991) TCGA-D3-A8GK-06 11 120996151 120996151 C T TECTA Silent p.S448S 0.43 TCGA-D3-A8GK-06 11 12246354 12246354 C T MICAL2 Missense_Mutation p.R559W 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 11 123886617 123886617 C T OR10G4 Silent p.F112F 0.28 TCGA-D3-A8GK-06 11 124293978 124293978 G A OR8B4 Missense_Mutation p.P264S 0.56 tolerated_low_confidence(0.39) benign(0.047) TCGA-D3-A8GK-06 11 124489751 124489751 G A PANX3 Missense_Mutation p.D367N 0.47 tolerated(0.13) probably_damaging(0.992) TCGA-D3-A8GK-06 11 125618695 125618695 C T PATE1 3'UTR 0.38 TCGA-D3-A8GK-06 11 1270842 1270842 G A MUC5B Silent p.P4244P 0.45 TCGA-D3-A8GK-06 11 134079247 134079247 G A NCAPD3 Missense_Mutation p.S231F 0.44 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GK-06 11 18231744 18231744 C T RP11-113D6.10 3'UTR 0.40 TCGA-D3-A8GK-06 11 1973389 1973389 A G MRPL23 Missense_Mutation p.E58G 0.49 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GK-06 11 31123760 31123760 T C DCDC1 Silent p.E649E 0.20 TCGA-D3-A8GK-06 11 33124718 33124718 G A CSTF3 Missense_Mutation p.H200Y 0.38 tolerated(1) benign(0.017) TCGA-D3-A8GK-06 11 35250749 35250749 A G CD44 Missense_Mutation p.N700D 0.41 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GK-06 11 3681310 3681310 G A ART1 Silent p.R187R 0.32 TCGA-D3-A8GK-06 11 47369975 47369975 C T MYBPC3 Missense_Mutation p.E258K 0.53 deleterious(0.03) possibly_damaging(0.882) TCGA-D3-A8GK-06 11 49597970 49597970 G A RP11-707M1.1 RNA 0.41 TCGA-D3-A8GK-06 11 5079920 5079920 C T OR52E2 Missense_Mutation p.G313E 0.37 tolerated(0.51) benign(0.002) TCGA-D3-A8GK-06 11 5221880 5221880 C T OR51V1 Silent p.T17T 0.38 TCGA-D3-A8GK-06 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.47 tolerated(1) benign(0.04) TCGA-D3-A8GK-06 11 55340470 55340470 T A OR4C16 Missense_Mutation p.N289K 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GK-06 11 5566694 5566694 G A OR52H1 Silent p.F20F 0.34 TCGA-D3-A8GK-06 11 5626775 5626775 G A TRIM6 Missense_Mutation p.G271E 0.26 tolerated(0.19) possibly_damaging(0.649) TCGA-D3-A8GK-06 11 5776396 5776396 A T OR52N4 Silent p.V142V 0.49 TCGA-D3-A8GK-06 11 5776861 5776861 G A OR52N4 Silent p.V297V 0.36 TCGA-D3-A8GK-06 11 57886379 57886379 C T OR9I1 Missense_Mutation p.D180N 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 11 58916326 58916326 C T FAM111A 5'UTR 0.49 TCGA-D3-A8GK-06 11 62301047 62301047 G A AHNAK Missense_Mutation p.S281L 0.40 benign(0.026) TCGA-D3-A8GK-06 11 63963245 63963245 C A STIP1 Missense_Mutation p.P211Q 0.40 tolerated(0.11) benign(0.025) TCGA-D3-A8GK-06 11 66583646 66583646 C T C11orf80 Missense_Mutation p.P438S 0.57 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A8GK-06 11 67401719 67401719 G A TBX10 Nonsense_Mutation p.Q164* 0.52 TCGA-D3-A8GK-06 11 67401727 67401727 C T TBX10 Nonsense_Mutation p.W161* 0.37 TCGA-D3-A8GK-06 11 68671265 68671265 G A MRPL21 Missense_Mutation p.S5F 0.42 deleterious_low_confidence(0.03) benign(0.011) TCGA-D3-A8GK-06 11 6898738 6898738 A G OR10A4 Missense_Mutation p.N287S 0.34 deleterious(0) benign(0.35) TCGA-D3-A8GK-06 11 72300792 72300792 C T PDE2A Intron 0.36 TCGA-D3-A8GK-06 11 7981503 7981503 C T NLRP10 Missense_Mutation p.M552I 0.42 tolerated(0.29) benign(0.003) TCGA-D3-A8GK-06 12 101504317 101504317 C T ANO4 Missense_Mutation p.S727L 0.36 tolerated(0.06) benign(0.281) TCGA-D3-A8GK-06 12 10532301 10532301 T C KLRK1 Missense_Mutation p.N80S 0.29 tolerated(0.17) benign(0.027) TCGA-D3-A8GK-06 12 109198959 109198959 A T SSH1 Missense_Mutation p.I276N 0.35 deleterious(0) possibly_damaging(0.883) TCGA-D3-A8GK-06 12 123346057 123346057 A G HIP1R Missense_Mutation p.H1052R 0.31 tolerated_low_confidence(0.42) benign(0.001) TCGA-D3-A8GK-06 12 124350572 124350572 G A DNAH10 Silent p.L2255L 0.55 TCGA-D3-A8GK-06 12 132398912 132398912 C T ULK1 Silent p.F421F 0.36 TCGA-D3-A8GK-06 12 132512582 132512582 G T EP400 Missense_Mutation p.L1710F 0.54 unknown(0) TCGA-D3-A8GK-06 12 132522532 132522532 C T EP400 Missense_Mutation p.P2033L 0.47 unknown(0) TCGA-D3-A8GK-06 12 132522533 132522533 C A EP400 Silent p.P2033P 0.47 TCGA-D3-A8GK-06 12 132624194 132624194 C A DDX51 Nonsense_Mutation p.E654* 0.45 TCGA-D3-A8GK-06 12 132636305 132636305 C T NOC4L Silent p.D419D 0.46 TCGA-D3-A8GK-06 12 15710424 15710424 C T PTPRO Missense_Mutation p.S865F 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GK-06 12 18499689 18499689 C T PIK3C2G Missense_Mutation p.S515F 0.55 deleterious(0.04) benign(0.078) TCGA-D3-A8GK-06 12 21918732 21918732 C T KCNJ8 Silent p.R400R 0.49 TCGA-D3-A8GK-06 12 26755552 26755552 C T ITPR2 Missense_Mutation p.E1184K 0.44 tolerated(0.19) possibly_damaging(0.842) TCGA-D3-A8GK-06 12 33538208 33538208 C T SYT10 Missense_Mutation p.E366K 0.42 tolerated(0.07) probably_damaging(0.991) TCGA-D3-A8GK-06 12 39726903 39726903 C T KIF21A Missense_Mutation p.A832T 0.46 deleterious(0.02) probably_damaging(0.991) TCGA-D3-A8GK-06 12 40645066 40645066 G A LRRK2 Missense_Mutation p.E331K 0.59 deleterious(0.03) benign(0.366) TCGA-D3-A8GK-06 12 40761557 40761557 C T LRRK2 Missense_Mutation p.S2525F 0.39 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-D3-A8GK-06 12 47172098 47172098 G A SLC38A4 Silent p.V349V 0.46 TCGA-D3-A8GK-06 12 47629209 47629209 G A PCED1B Missense_Mutation p.M121I 0.46 tolerated(0.42) possibly_damaging(0.621) TCGA-D3-A8GK-06 12 4870139 4870139 G A GALNT8 Missense_Mutation p.G397R 0.46 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GK-06 12 48723807 48723807 G A H1FNT Missense_Mutation p.E245K 0.53 tolerated(0.14) possibly_damaging(0.486) TCGA-D3-A8GK-06 12 49434384 49434384 G - KMT2D Frame_Shift_Del p.P2390Rfs*36 0.32 TCGA-D3-A8GK-06 12 51851187 51851187 G A SLC4A8 Silent p.R209R 0.52 TCGA-D3-A8GK-06 12 52827942 52827942 C T KRT75 Silent p.R49R 0.51 TCGA-D3-A8GK-06 12 52881664 52881664 C T KRT6A Missense_Mutation p.G512E 0.35 deleterious(0.01) unknown(0) TCGA-D3-A8GK-06 12 53228004 53228004 C T KRT79 Missense_Mutation p.G14E 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GK-06 12 55354990 55354990 G A TESPA1 Missense_Mutation p.P510L 0.40 deleterious_low_confidence(0.04) benign(0.024) TCGA-D3-A8GK-06 12 55641779 55641779 T C OR6C74 Silent p.F236F 0.37 TCGA-D3-A8GK-06 12 55846297 55846297 C T OR6C2 Silent p.F100F 0.42 TCGA-D3-A8GK-06 12 56494880 56494880 C T ERBB3 Silent p.P1079P 0.39 TCGA-D3-A8GK-06 12 57643382 57643382 G A STAC3 Missense_Mutation p.S13F 0.41 deleterious(0.01) benign(0.121) TCGA-D3-A8GK-06 12 60098653 60098653 G A SLC16A7 Missense_Mutation p.G24E 0.49 deleterious(0.04) benign(0.408) TCGA-D3-A8GK-06 12 64823922 64823922 G A XPOT Missense_Mutation p.E611K 0.49 deleterious(0.01) benign(0.33) TCGA-D3-A8GK-06 12 69652480 69652480 C T CPSF6 Nonsense_Mutation p.R269* 0.45 TCGA-D3-A8GK-06 12 7559236 7559236 C T CD163L1 Missense_Mutation p.D327N 0.36 tolerated(0.08) probably_damaging(0.945) TCGA-D3-A8GK-06 12 81239613 81239613 C T LIN7A Missense_Mutation p.E127K 0.55 deleterious(0) possibly_damaging(0.874) TCGA-D3-A8GK-06 12 86377404 86377404 C T MGAT4C Silent p.L64L 0.48 TCGA-D3-A8GK-06 12 88383104 88383104 C T C12orf50 Missense_Mutation p.D213N 0.47 tolerated(0.32) benign(0.085) TCGA-D3-A8GK-06 12 88566411 88566411 C T TMTC3 Missense_Mutation p.S363L 0.47 deleterious(0) possibly_damaging(0.903) TCGA-D3-A8GK-06 12 9231857 9231857 C T A2M Silent p.R1034R 0.33 TCGA-D3-A8GK-06 13 102235636 102235636 G A ITGBL1 Silent p.G266G 0.38 TCGA-D3-A8GK-06 13 102379149 102379149 G A FGF14 Silent p.T145T 0.46 TCGA-D3-A8GK-06 13 108882131 108882131 C T ABHD13 Missense_Mutation p.L189F 0.47 deleterious(0.02) probably_damaging(0.992) TCGA-D3-A8GK-06 13 108882132 108882132 T A ABHD13 Missense_Mutation p.L189H 0.48 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 13 109707935 109707935 C T MYO16 Silent p.F1087F 0.30 TCGA-D3-A8GK-06 13 19751421 19751421 G A TUBA3C Silent p.I234I 0.42 TCGA-D3-A8GK-06 13 21557818 21557818 A T LATS2 Missense_Mutation p.I676N 0.47 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A8GK-06 13 22255188 22255188 G A FGF9 Silent p.L95L 0.32 TCGA-D3-A8GK-06 13 33704201 33704201 C T STARD13 Missense_Mutation p.G205S 0.47 tolerated(0.32) benign(0.21) TCGA-D3-A8GK-06 13 46918903 46918903 G A KIAA0226L Nonsense_Mutation p.Q617* 0.50 TCGA-D3-A8GK-06 13 48919260 48919274 CCAAAGTTGATAATG - RB1 In_Frame_Del p.K143_A147del 0.28 TCGA-D3-A8GK-06 13 49039404 49039404 T - RB1 Frame_Shift_Del p.L797Yfs*13 0.31 TCGA-D3-A8GK-06 13 75936555 75936555 G A TBC1D4 Silent p.F229F 0.31 TCGA-D3-A8GK-06 13 84453800 84453800 C T SLITRK1 Missense_Mutation p.V615M 0.38 deleterious(0.02) possibly_damaging(0.495) TCGA-D3-A8GK-06 13 94482708 94482708 G A GPC6 Silent p.L207L 0.49 TCGA-D3-A8GK-06 13 97639645 97639645 G A OXGR1 Silent p.F123F 0.33 TCGA-D3-A8GK-06 14 100594998 100594998 A G EVL Silent p.G210G 0.53 TCGA-D3-A8GK-06 14 105408676 105408676 A G AHNAK2 Missense_Mutation p.V4371A 0.63 benign(0.054) TCGA-D3-A8GK-06 14 107083336 107083336 C T IGHV4-59 Missense_Mutation p.V90I 0.56 tolerated_low_confidence(0.08) benign(0.002) TCGA-D3-A8GK-06 14 107210968 107210968 C T IGHV3-73 Silent p.L107L 0.35 TCGA-D3-A8GK-06 14 19969225 19969225 G A CTD-2311B13.7 RNA 0.27 TCGA-D3-A8GK-06 14 20345023 20345023 G A OR4K2 Missense_Mutation p.M199I 0.36 tolerated(0.6) probably_damaging(0.998) TCGA-D3-A8GK-06 14 21360113 21360113 C T RNASE3 Missense_Mutation p.P90S 0.03 tolerated(0.85) benign(0.088) TCGA-D3-A8GK-06 14 23282348 23282348 G A SLC7A7 Missense_Mutation p.A87V 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 14 24592491 24592491 C T DCAF11 Silent p.S538S 0.33 TCGA-D3-A8GK-06 14 24629810 24629810 C T RNF31 3'UTR 0.43 TCGA-D3-A8GK-06 14 31642962 31642962 G A HECTD1 Silent p.T218T 0.52 TCGA-D3-A8GK-06 14 34269992 34269992 G A NPAS3 Missense_Mutation p.G827S 0.21 tolerated_low_confidence(0.3) probably_damaging(0.971) TCGA-D3-A8GK-06 14 51214712 51214712 G A NIN Nonsense_Mutation p.Q1688* 0.37 TCGA-D3-A8GK-06 14 55642104 55642104 C T DLGAP5 Missense_Mutation p.G421S 0.31 tolerated(0.08) benign(0.219) TCGA-D3-A8GK-06 14 58060760 58060760 G A SLC35F4 Silent p.S98S 0.33 TCGA-D3-A8GK-06 14 64516396 64516396 A T SYNE2 Missense_Mutation p.N2482I 0.56 possibly_damaging(0.672) TCGA-D3-A8GK-06 14 68273381 68273381 G A ZFYVE26 Missense_Mutation p.H300Y 0.38 tolerated(1) benign(0.184) TCGA-D3-A8GK-06 14 69805444 69805444 G A GALNT16 Silent p.R348R 0.60 TCGA-D3-A8GK-06 14 77743601 77743601 G A POMT2 3'UTR 0.78 TCGA-D3-A8GK-06 14 89168946 89168946 C T EML5 Silent p.L694L 0.69 TCGA-D3-A8GK-06 14 91791245 91791245 C T CCDC88C Missense_Mutation p.R407Q 0.18 deleterious(0.01) benign(0.382) TCGA-D3-A8GK-06 14 93397972 93397972 C T CHGA Missense_Mutation p.P245S 0.35 tolerated(0.41) benign(0.019) TCGA-D3-A8GK-06 14 94156489 94156489 C T UNC79 Missense_Mutation p.S2233F 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GK-06 14 95934259 95934259 C T SYNE3 Missense_Mutation p.V64M 0.32 deleterious(0) possibly_damaging(0.87) TCGA-D3-A8GK-06 15 24922523 24922523 C T NPAP1 Silent p.S503S 0.40 TCGA-D3-A8GK-06 15 25302102 25302102 A G SNORD116-3 3'Flank 0.39 TCGA-D3-A8GK-06 15 25422044 25422044 G A SNORD115-4 RNA 0.44 TCGA-D3-A8GK-06 15 26793250 26793250 G A GABRB3 Missense_Mutation p.S371L 0.44 tolerated(0.13) benign(0.129) TCGA-D3-A8GK-06 15 26793260 26793260 G A GABRB3 Silent p.L368L 0.42 TCGA-D3-A8GK-06 15 40034048 40034048 G A FSIP1 Missense_Mutation p.P205S 0.45 tolerated(0.18) benign(0.27) TCGA-D3-A8GK-06 15 40093389 40093389 C T GPR176 Missense_Mutation p.E498K 0.37 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-D3-A8GK-06 15 40564808 40564808 C T PAK6 Silent p.G414G 0.52 TCGA-D3-A8GK-06 15 40674994 40674994 C G KNSTRN 5'UTR 0.40 TCGA-D3-A8GK-06 15 41816385 41816385 G A RPAP1 Nonsense_Mutation p.Q715* 0.48 TCGA-D3-A8GK-06 15 41816386 41816386 A G RPAP1 Silent p.P714P 0.50 TCGA-D3-A8GK-06 15 43527944 43527944 T C TGM5 Silent p.Q479Q 0.41 TCGA-D3-A8GK-06 15 43739672 43739672 G A TP53BP1 Missense_Mutation p.H910Y 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 15 45398828 45398828 G A DUOX2 Missense_Mutation p.L615F 0.43 tolerated(0.29) benign(0.001) TCGA-D3-A8GK-06 15 45658407 45658407 A G GATM Missense_Mutation p.V272A 0.41 deleterious(0.03) probably_damaging(0.955) TCGA-D3-A8GK-06 15 49833949 49833949 G A FAM227B Missense_Mutation p.P268S 0.38 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GK-06 15 50570966 50570966 G A GABPB1 Nonsense_Mutation p.Q351* 0.37 TCGA-D3-A8GK-06 15 51693874 51693874 G A GLDN Missense_Mutation p.G371D 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 15 64792112 64792112 C T ZNF609 Missense_Mutation p.S165F 0.90 deleterious(0) possibly_damaging(0.861) TCGA-D3-A8GK-06 15 65262540 65262540 A G SPG21 Missense_Mutation p.F158S 0.84 tolerated(0.06) possibly_damaging(0.677) TCGA-D3-A8GK-06 15 65262542 65262542 T A SPG21 Silent p.A157A 0.84 TCGA-D3-A8GK-06 15 65621215 65621215 C T IGDCC3 3'UTR 0.79 TCGA-D3-A8GK-06 15 65772709 65772709 G A DPP8 Nonsense_Mutation p.Q399* 0.86 TCGA-D3-A8GK-06 15 66840686 66840686 C T ZWILCH Intron 0.50 TCGA-D3-A8GK-06 15 72196311 72196311 G A MYO9A Nonsense_Mutation p.R946* 0.29 TCGA-D3-A8GK-06 15 73408892 73408892 C T NEO1 Nonsense_Mutation p.R48* 0.38 TCGA-D3-A8GK-06 15 74337036 74337036 C T PML Missense_Mutation p.A779V 0.42 tolerated(0.06) benign(0.051) TCGA-D3-A8GK-06 15 74631634 74631634 G A CYP11A1 Silent p.L394L 0.48 TCGA-D3-A8GK-06 15 75980409 75980409 G A CSPG4 Silent p.A999A 0.49 TCGA-D3-A8GK-06 15 75980410 75980410 G A CSPG4 Missense_Mutation p.A999V 0.48 tolerated(0.22) possibly_damaging(0.621) TCGA-D3-A8GK-06 15 85666360 85666360 T C PDE8A Missense_Mutation p.F674S 0.43 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GK-06 15 90246473 90246473 G A WDR93 Intron 0.51 TCGA-D3-A8GK-06 15 91500926 91500927 - G RCCD1 Frame_Shift_Ins p.W220Lfs*8 0.35 TCGA-D3-A8GK-06 16 18851152 18851152 G A SMG1 Silent p.S2271S 0.40 TCGA-D3-A8GK-06 16 19278221 19278221 G A SYT17 Silent p.K416K 0.49 TCGA-D3-A8GK-06 16 19451338 19451338 C T TMC5 5'UTR 0.44 TCGA-D3-A8GK-06 16 20693643 20693643 C T ACSM1 Silent p.L182L 0.39 TCGA-D3-A8GK-06 16 23200986 23200986 C T SCNN1G Silent p.F204F 0.44 TCGA-D3-A8GK-06 16 31151973 31151973 C T PRSS36 Silent p.R669R 0.41 TCGA-D3-A8GK-06 16 31151974 31151974 C T PRSS36 Missense_Mutation p.R669Q 0.42 tolerated(0.36) benign(0.082) TCGA-D3-A8GK-06 16 3486470 3486470 A G ZNF597 Missense_Mutation p.L410S 0.46 tolerated(0.22) benign(0.179) TCGA-D3-A8GK-06 16 4933367 4933367 G A PPL 3'UTR 0.36 TCGA-D3-A8GK-06 16 50707296 50707296 C T SNX20 3'UTR 0.38 TCGA-D3-A8GK-06 16 50707862 50707862 C T SNX20 Missense_Mutation p.E136K 0.50 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A8GK-06 16 56899327 56899327 G A SLC12A3 Silent p.T60T 0.40 TCGA-D3-A8GK-06 16 61747796 61747796 G A CDH8 Missense_Mutation p.L535F 0.47 tolerated(0.06) probably_damaging(0.971) TCGA-D3-A8GK-06 16 70852273 70852273 G A HYDIN Missense_Mutation p.S4877F 0.27 probably_damaging(0.919) TCGA-D3-A8GK-06 16 70917899 70917899 G A HYDIN Silent p.I3301I 0.37 TCGA-D3-A8GK-06 16 71103186 71103186 C T HYDIN Missense_Mutation p.G653E 0.44 probably_damaging(0.998) TCGA-D3-A8GK-06 16 74425677 74425677 C T NPIPB15 Missense_Mutation p.P344L 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GK-06 16 74446763 74446763 G A CLEC18B Missense_Mutation p.P231L 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GK-06 16 7568282 7568282 G C RBFOX1 Missense_Mutation p.G74A 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A8GK-06 16 86585670 86585670 G A MTHFSD Missense_Mutation p.P69L 0.45 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GK-06 16 88599096 88599096 G T ZFPM1 Missense_Mutation p.V341L 0.53 deleterious(0) probably_damaging(0.945) TCGA-D3-A8GK-06 16 88926153 88926153 C T TRAPPC2L Missense_Mutation p.R97C 0.51 deleterious(0.03) benign(0.431) TCGA-D3-A8GK-06 16 89349515 89349515 C T ANKRD11 Silent p.R1145R 0.43 TCGA-D3-A8GK-06 16 89371672 89371672 G A ANKRD11 Silent p.S56S 0.58 TCGA-D3-A8GK-06 16 9923440 9923440 G A GRIN2A Missense_Mutation p.S616F 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 17 10206756 10206756 C T MYH13 Silent p.K1842K 0.54 TCGA-D3-A8GK-06 17 11737988 11737988 G A DNAH9 Missense_Mutation p.E3094K 0.40 benign(0.445) TCGA-D3-A8GK-06 17 11894472 11894472 G A ZNF18 Silent p.I132I 0.42 TCGA-D3-A8GK-06 17 12647550 12647550 C T MYOCD Silent p.P256P 0.34 TCGA-D3-A8GK-06 17 13972869 13972869 C T COX10 5'UTR 0.67 TCGA-D3-A8GK-06 17 15619929 15619929 C T ZNF286A Silent p.L297L 0.39 TCGA-D3-A8GK-06 17 1637437 1637437 C T WDR81 Silent p.F1702F 0.35 TCGA-D3-A8GK-06 17 17948482 17948482 T A GID4 Missense_Mutation p.Y154N 0.54 deleterious(0.03) benign(0.065) TCGA-D3-A8GK-06 17 18047248 18047248 C T MYO15A Silent p.P2037P 0.58 TCGA-D3-A8GK-06 17 18178015 18178015 A G TOP3A 3'UTR 0.47 TCGA-D3-A8GK-06 17 19314674 19314674 C T RNF112 5'UTR 0.46 TCGA-D3-A8GK-06 17 19314763 19314763 G A RNF112 Silent p.R14R 0.42 TCGA-D3-A8GK-06 17 2593953 2593953 C A CLUH Missense_Mutation p.A1289S 0.10 tolerated_low_confidence(0.18) probably_damaging(0.935) TCGA-D3-A8GK-06 17 27225621 27225621 G A DHRS13 Silent p.D324D 0.65 TCGA-D3-A8GK-06 17 27938931 27938931 C A ANKRD13B Missense_Mutation p.T336N 0.52 deleterious(0.02) possibly_damaging(0.744) TCGA-D3-A8GK-06 17 33446685 33446685 C T RAD51D 5'UTR 0.50 TCGA-D3-A8GK-06 17 33770811 33770811 G A SLFN13 Missense_Mutation p.P399S 0.43 tolerated(0.16) benign(0.035) TCGA-D3-A8GK-06 17 33849503 33849503 C T SLFN12L 5'UTR 0.34 TCGA-D3-A8GK-06 17 35896159 35896159 C T SYNRG Silent p.E1196E 0.43 TCGA-D3-A8GK-06 17 36871887 36871887 C T MLLT6 Missense_Mutation p.S281F 0.43 deleterious(0.01) unknown(0) TCGA-D3-A8GK-06 17 3789000 3789000 T C CAMKK1 5'UTR 0.30 TCGA-D3-A8GK-06 17 38245632 38245632 C T THRA Intron 0.45 TCGA-D3-A8GK-06 17 39316834 39316834 C T KRTAP4-4 Missense_Mutation p.R37H 0.37 unknown(0) TCGA-D3-A8GK-06 17 39340626 39340626 G A KRTAP4-1 3'UTR 0.43 TCGA-D3-A8GK-06 17 39635158 39635158 C T KRT35 Silent p.E267E 0.36 TCGA-D3-A8GK-06 17 41955221 41955221 T A MPP2 Missense_Mutation p.K538M 0.48 tolerated(0.05) possibly_damaging(0.907) TCGA-D3-A8GK-06 17 44414842 44414842 C A LRRC37A Nonsense_Mutation p.Y1654* 0.26 TCGA-D3-A8GK-06 17 45911854 45911854 G A LRRC46 Silent p.R60R 0.42 TCGA-D3-A8GK-06 17 48452654 48452654 G A EME1 Missense_Mutation p.E29K 0.47 tolerated(0.22) benign(0.027) TCGA-D3-A8GK-06 17 48632611 48632613 CGT AG SPATA20 Frame_Shift_Del p.R726Sfs*23 0.41 TCGA-D3-A8GK-06 17 5035554 5035554 C T USP6 Intron 0.31 TCGA-D3-A8GK-06 17 54517721 54517721 T C ANKFN1 Missense_Mutation p.L318S 0.45 deleterious(0.03) possibly_damaging(0.773) TCGA-D3-A8GK-06 17 59820485 59820485 G A BRIP1 Silent p.L756L 0.59 TCGA-D3-A8GK-06 17 61574541 61574541 C T ACE Silent p.F1245F 0.29 TCGA-D3-A8GK-06 17 61623199 61623199 C T KCNH6 Missense_Mutation p.P974L 0.49 tolerated_low_confidence(0.14) benign(0.131) TCGA-D3-A8GK-06 17 61765893 61765893 C T MAP3K3 Silent p.S270S 0.41 TCGA-D3-A8GK-06 17 65735123 65735123 C T NOL11 Silent p.I613I 0.47 TCGA-D3-A8GK-06 17 67300872 67300872 A T ABCA5 Missense_Mutation p.L290I 0.48 tolerated(0.17) probably_damaging(0.993) TCGA-D3-A8GK-06 17 71199272 71199272 G A COG1 Missense_Mutation p.R736Q 0.53 deleterious(0.01) benign(0.094) TCGA-D3-A8GK-06 17 7678205 7678205 G C DNAH2 Missense_Mutation p.E1544Q 0.47 probably_damaging(0.986) TCGA-D3-A8GK-06 17 79650857 79650857 G A ARL16 5'UTR 0.38 TCGA-D3-A8GK-06 17 79866477 79866477 G A PCYT2 Missense_Mutation p.T125I 0.39 deleterious(0.01) benign(0.3) TCGA-D3-A8GK-06 17 79915750 79915750 C T NOTUM Silent p.Q209Q 0.50 TCGA-D3-A8GK-06 17 8044382 8044382 G A PER1 3'UTR 0.51 TCGA-D3-A8GK-06 18 21413904 21413904 C T LAMA3 Missense_Mutation p.S979F 0.35 benign(0.025) TCGA-D3-A8GK-06 18 21413905 21413905 C T LAMA3 Silent p.S979S 0.35 TCGA-D3-A8GK-06 18 31318725 31318725 G A ASXL3 Missense_Mutation p.E453K 0.57 probably_damaging(0.997) TCGA-D3-A8GK-06 18 31326340 31326340 G A ASXL3 Silent p.G2176G 0.43 TCGA-D3-A8GK-06 18 31432812 31432812 C T NOL4 Silent p.Q637Q 0.52 TCGA-D3-A8GK-06 18 44284563 44284563 C T ST8SIA5 Missense_Mutation p.E66K 0.40 benign(0.073) TCGA-D3-A8GK-06 18 50937000 50937000 C T DCC Silent p.L1038L 0.43 TCGA-D3-A8GK-06 18 51057005 51057005 C T DCC Silent p.I1442I 0.42 TCGA-D3-A8GK-06 18 52258517 52258517 G A DYNAP Missense_Mutation p.D28N 0.52 deleterious(0.03) benign(0.198) TCGA-D3-A8GK-06 18 52895588 52895588 C T TCF4 Silent p.R730R 0.33 TCGA-D3-A8GK-06 18 61377530 61377530 C T SERPINB11 Silent p.L35L 0.40 TCGA-D3-A8GK-06 18 61471965 61471965 C T SERPINB7 3'UTR 0.45 TCGA-D3-A8GK-06 18 63477036 63477036 G A CDH7 Missense_Mutation p.D103N 0.56 tolerated(0.18) probably_damaging(0.992) TCGA-D3-A8GK-06 18 67365830 67365830 G A DOK6 Splice_Site p.X200_splice 0.39 TCGA-D3-A8GK-06 18 6949128 6949128 G A LAMA1 Missense_Mutation p.S2843F 0.46 tolerated(0.72) benign(0.009) TCGA-D3-A8GK-06 18 77960800 77960800 G A PARD6G Nonsense_Mutation p.R30* 0.62 TCGA-D3-A8GK-06 19 10574508 10574508 C T PDE4A Missense_Mutation p.P595S 0.32 deleterious(0.03) probably_damaging(0.909) TCGA-D3-A8GK-06 19 1068555 1068555 C T HMHA1 Missense_Mutation p.P94L 0.38 deleterious(0.01) possibly_damaging(0.833) TCGA-D3-A8GK-06 19 11132428 11132428 G A SMARCA4 Missense_Mutation p.E882K 0.30 possibly_damaging(0.692) TCGA-D3-A8GK-06 19 11517525 11517525 G A RGL3 Missense_Mutation p.A218V 0.42 tolerated(0.15) benign(0.043) TCGA-D3-A8GK-06 19 11527696 11527696 C T RGL3 Missense_Mutation p.R62Q 0.43 deleterious(0.02) probably_damaging(0.964) TCGA-D3-A8GK-06 19 11597933 11597933 C T ZNF653 Silent p.E404E 0.30 TCGA-D3-A8GK-06 19 12962810 12962810 T C MAST1 Silent p.L279L 0.53 TCGA-D3-A8GK-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.53 tolerated(0.09) benign(0.03) TCGA-D3-A8GK-06 19 18180362 18180362 C T IL12RB1 Missense_Mutation p.G395R 0.41 tolerated(0.13) benign(0.04) TCGA-D3-A8GK-06 19 18235113 18235113 C T MAST3 Silent p.I265I 0.28 TCGA-D3-A8GK-06 19 18729065 18729065 C T TMEM59L Silent p.F255F 0.41 TCGA-D3-A8GK-06 19 20045048 20045048 A G ZNF93 Silent p.E428E 0.42 TCGA-D3-A8GK-06 19 21608281 21608281 C T ZNF493 3'UTR 0.60 TCGA-D3-A8GK-06 19 22272191 22272191 G A ZNF257 Missense_Mutation p.E547K 0.24 tolerated(0.09) benign(0.078) TCGA-D3-A8GK-06 19 24010532 24010532 C T RPSAP58 Missense_Mutation p.S190F 0.21 deleterious(0.01) benign(0.056) TCGA-D3-A8GK-06 19 30935982 30935982 C T ZNF536 Missense_Mutation p.R505W 0.39 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GK-06 19 3548019 3548019 G A MFSD12 Silent p.L222L 0.42 TCGA-D3-A8GK-06 19 362197 362197 G A THEG 3'UTR 0.33 TCGA-D3-A8GK-06 19 37309266 37309266 G A ZNF790 3'UTR 0.48 TCGA-D3-A8GK-06 19 38874125 38874125 C T PSMD8 3'UTR 0.79 TCGA-D3-A8GK-06 19 39018392 39018392 G A RYR1 Missense_Mutation p.E3598K 0.60 benign(0.064) TCGA-D3-A8GK-06 19 39051833 39051833 G A RYR1 Missense_Mutation p.M4121I 0.44 benign(0) TCGA-D3-A8GK-06 19 39086336 39086336 G A MAP4K1 Missense_Mutation p.P738L 0.47 tolerated(1) probably_damaging(1) TCGA-D3-A8GK-06 19 39760410 39760410 C T IFNL2 Silent p.T151T 0.71 TCGA-D3-A8GK-06 19 3980662 3980662 G A EEF2 Missense_Mutation p.S399F 0.38 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 19 41063305 41063305 C T SPTBN4 Missense_Mutation p.S1889F 0.42 tolerated(0.13) probably_damaging(0.939) TCGA-D3-A8GK-06 19 4159682 4159682 G A CREB3L3 Missense_Mutation p.R160K 0.38 tolerated(0.82) benign(0.028) TCGA-D3-A8GK-06 19 42092868 42092868 G A CEACAM21 3'UTR 0.31 TCGA-D3-A8GK-06 19 43098984 43098984 C T CEACAM8 5'UTR 0.42 TCGA-D3-A8GK-06 19 43268190 43268190 G A PSG8 Missense_Mutation p.S103F 0.40 tolerated(0.06) probably_damaging(0.932) TCGA-D3-A8GK-06 19 43530549 43530549 C T PSG11 5'UTR 0.47 TCGA-D3-A8GK-06 19 4409285 4409285 C T CHAF1A Silent p.A163A 0.44 TCGA-D3-A8GK-06 19 44500921 44500921 G A ZNF155 Silent p.K315K 0.45 TCGA-D3-A8GK-06 19 4512612 4512612 C T PLIN4 Missense_Mutation p.G440S 0.28 tolerated(0.1) probably_damaging(1) TCGA-D3-A8GK-06 19 4512909 4512909 C T PLIN4 Missense_Mutation p.G341S 0.31 tolerated(0.09) unknown(0) TCGA-D3-A8GK-06 19 47912440 47912440 C T MEIS3 Silent p.Q258Q 0.40 TCGA-D3-A8GK-06 19 49132442 49132442 G A SPHK2 Silent p.G459G 0.42 TCGA-D3-A8GK-06 19 50413033 50413033 G A NUP62 Missense_Mutation p.A11V 0.56 tolerated(0.13) unknown(0) TCGA-D3-A8GK-06 19 52249815 52249815 C T FPR1 Missense_Mutation p.V145M 0.47 deleterious(0.04) possibly_damaging(0.77) TCGA-D3-A8GK-06 19 52249816 52249816 C T FPR1 Silent p.K144K 0.49 TCGA-D3-A8GK-06 19 53571609 53571609 G A ZNF160 Silent p.I726I 0.40 TCGA-D3-A8GK-06 19 54799933 54799933 A G LILRA3 3'UTR 0.47 TCGA-D3-A8GK-06 19 55085861 55085861 C T LILRA2 Missense_Mutation p.A55V 0.39 deleterious(0.05) benign(0.012) TCGA-D3-A8GK-06 19 55086898 55086898 G A LILRA2 Silent p.Q277Q 0.41 TCGA-D3-A8GK-06 19 55106772 55106772 C T LILRA1 Missense_Mutation p.P189L 0.46 deleterious(0.03) benign(0.402) TCGA-D3-A8GK-06 19 55146135 55146135 C T LILRB1 Silent p.A469A 0.58 TCGA-D3-A8GK-06 19 55224441 55224441 C T LILRP2 RNA 0.63 TCGA-D3-A8GK-06 19 55526300 55526300 A G GP6 Missense_Mutation p.V338A 0.45 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-D3-A8GK-06 19 56160901 56160901 C T CCDC106 Silent p.F88F 0.35 TCGA-D3-A8GK-06 19 56321148 56321148 G A NLRP11 Silent p.S276S 0.38 TCGA-D3-A8GK-06 19 56969605 56969605 G A ZNF667 Missense_Mutation p.R58W 0.49 tolerated(0.2) probably_damaging(0.985) TCGA-D3-A8GK-06 19 58115651 58115651 T A ZNF530 Missense_Mutation p.F13I 0.41 tolerated(0.4) benign(0.008) TCGA-D3-A8GK-06 19 58806009 58806009 C T ZNF8 Missense_Mutation p.H279Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 19 6479697 6479697 G A DENND1C Silent p.F53F 0.45 TCGA-D3-A8GK-06 19 6974552 6974552 C T EMR4P RNA 0.50 TCGA-D3-A8GK-06 19 9058427 9058427 G A MUC16 Silent p.S9673S 0.37 TCGA-D3-A8GK-06 19 9086683 9086683 C A MUC16 Missense_Mutation p.G1711V 0.34 unknown(0) TCGA-D3-A8GK-06 19 9087601 9087601 G A MUC16 Missense_Mutation p.S1405L 0.45 unknown(0) TCGA-D3-A8GK-06 1 109270513 109270513 G A FNDC7 Missense_Mutation p.E399K 0.56 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A8GK-06 1 114443724 114443724 C T AP4B1 Intron 0.50 TCGA-D3-A8GK-06 1 115220052 115220052 C T AMPD1 Nonsense_Mutation p.W469* 0.35 TCGA-D3-A8GK-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.52 tolerated(0.06) benign(0.006) TCGA-D3-A8GK-06 1 11898430 11898430 C T CLCN6 Silent p.A778A 0.57 TCGA-D3-A8GK-06 1 119923318 119923318 G A HAO2 Intron 0.41 TCGA-D3-A8GK-06 1 12955519 12955519 G A PRAMEF10 Silent p.L54L 0.48 TCGA-D3-A8GK-06 1 142713961 142713961 C T RP11-417J8.6 RNA 0.47 TCGA-D3-A8GK-06 1 151824797 151824797 A C THEM5 Missense_Mutation p.F88V 0.68 deleterious(0.01) benign(0.424) TCGA-D3-A8GK-06 1 152188433 152188433 G A HRNR Missense_Mutation p.S1891L 0.06 unknown(0) TCGA-D3-A8GK-06 1 152538502 152538502 G A LCE3E Silent p.H61H 0.71 TCGA-D3-A8GK-06 1 152975918 152975918 T C SPRR3 Missense_Mutation p.V141A 0.19 tolerated(0.13) possibly_damaging(0.826) TCGA-D3-A8GK-06 1 153346247 153346247 G A S100A12 3'UTR 0.32 TCGA-D3-A8GK-06 1 153735802 153735802 C T INTS3 Missense_Mutation p.S577F 0.70 tolerated(0.11) benign(0.281) TCGA-D3-A8GK-06 1 154042938 154042938 G A NUP210L Missense_Mutation p.P789S 0.67 deleterious(0) benign(0.076) TCGA-D3-A8GK-06 1 154794588 154794588 C T KCNN3 Missense_Mutation p.A336T 0.16 tolerated(0.16) probably_damaging(0.996) TCGA-D3-A8GK-06 1 155041495 155041495 G A EFNA4 Missense_Mutation p.R157K 0.21 tolerated(1) benign(0.003) TCGA-D3-A8GK-06 1 155271181 155271181 C T PKLR Silent p.S2S 0.78 TCGA-D3-A8GK-06 1 155786031 155786031 G A GON4L Missense_Mutation p.S346L 0.16 deleterious(0) possibly_damaging(0.504) TCGA-D3-A8GK-06 1 155837926 155837926 C T SYT11 Missense_Mutation p.L69F 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GK-06 1 156756708 156756708 C T PRCC Silent p.N275N 0.77 TCGA-D3-A8GK-06 1 156811495 156811495 G A INSRR Silent p.S1163S 0.20 TCGA-D3-A8GK-06 1 157516948 157516948 C T FCRL5 Nonsense_Mutation p.W31* 0.65 TCGA-D3-A8GK-06 1 15798551 15798551 G A CELA2A 3'UTR 0.38 TCGA-D3-A8GK-06 1 158225030 158225030 G A CD1A Missense_Mutation p.R72K 0.22 tolerated(1) benign(0.24) TCGA-D3-A8GK-06 1 158617378 158617378 C T SPTA1 Missense_Mutation p.E1283K 0.71 deleterious(0.02) possibly_damaging(0.664) TCGA-D3-A8GK-06 1 159854353 159854353 C T CCDC19 Missense_Mutation p.G257E 0.69 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GK-06 1 162381743 162381743 C T SH2D1B Missense_Mutation p.E22K 0.21 tolerated(1) benign(0.071) TCGA-D3-A8GK-06 1 165218718 165218718 C T LMX1A Silent p.Q141Q 0.26 TCGA-D3-A8GK-06 1 165370435 165370435 G A RXRG 3'UTR 0.64 TCGA-D3-A8GK-06 1 165532887 165532887 C T LRRC52 Silent p.F256F 0.73 TCGA-D3-A8GK-06 1 16946351 16946351 C T RP5-1182A14.5 3'Flank 0.23 TCGA-D3-A8GK-06 1 169700994 169700994 C T SELE Missense_Mutation p.G171R 0.69 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 1 173494046 173494046 G A SLC9C2 Missense_Mutation p.R796C 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GK-06 1 175363014 175363014 C T TNR Missense_Mutation p.G420R 0.72 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 1 176811672 176811672 G A PAPPA2 3'UTR 0.71 TCGA-D3-A8GK-06 1 178490319 178490319 G A TEX35 Intron 0.24 TCGA-D3-A8GK-06 1 179437652 179437652 C T AXDND1 Missense_Mutation p.P625S 0.23 tolerated(0.87) benign(0.023) TCGA-D3-A8GK-06 1 180063744 180063744 C T CEP350 Missense_Mutation p.P2835L 0.67 benign(0.216) TCGA-D3-A8GK-06 1 182026743 182026743 A C ZNF648 Missense_Mutation p.L135V 0.66 tolerated(0.31) benign(0.002) TCGA-D3-A8GK-06 1 183885649 183885649 C T RGL1 Silent p.S641S 0.21 TCGA-D3-A8GK-06 1 185269624 185269624 G A IVNS1ABP Missense_Mutation p.S396F 0.70 deleterious(0) benign(0.099) TCGA-D3-A8GK-06 1 185962337 185962337 C T HMCN1 Missense_Mutation p.S1134L 0.72 probably_damaging(0.993) TCGA-D3-A8GK-06 1 197071492 197071492 G A ASPM Missense_Mutation p.R2297W 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 1 201352246 201352246 C T LAD1 Missense_Mutation p.E448K 0.75 deleterious(0.01) possibly_damaging(0.876) TCGA-D3-A8GK-06 1 201617991 201617991 G A NAV1 Silent p.K65K 0.15 TCGA-D3-A8GK-06 1 207925451 207925451 G A CD46 5'UTR 0.69 TCGA-D3-A8GK-06 1 216370047 216370047 G A USH2A Missense_Mutation p.P1367S 0.72 benign(0.044) TCGA-D3-A8GK-06 1 228481144 228481144 C - OBSCN Frame_Shift_Del p.V4084Wfs*18 0.16 TCGA-D3-A8GK-06 1 228497218 228497218 C T OBSCN Missense_Mutation p.H5281Y 0.75 possibly_damaging(0.711) TCGA-D3-A8GK-06 1 229462517 229462517 G C CCSAP Missense_Mutation p.H202D 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 1 230915972 230915972 G A CAPN9 Missense_Mutation p.D388N 0.26 deleterious(0) possibly_damaging(0.676) TCGA-D3-A8GK-06 1 231047242 231047242 A T TTC13 Missense_Mutation p.N761K 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 1 233334684 233334684 C T PCNXL2 Splice_Site p.X1022_splice 0.67 TCGA-D3-A8GK-06 1 240071338 240071338 C T CHRM3 Missense_Mutation p.S196F 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 1 24180981 24180981 C T FUCA1 Missense_Mutation p.E280K 0.45 tolerated(0.34) benign(0.005) TCGA-D3-A8GK-06 1 247587294 247587294 G A NLRP3 Silent p.R183R 0.76 TCGA-D3-A8GK-06 1 248202499 248202499 G A OR2L2 Silent p.V310V 0.21 TCGA-D3-A8GK-06 1 248224427 248224427 G A OR2L3 Nonsense_Mutation p.W148* 0.32 TCGA-D3-A8GK-06 1 248790397 248790397 G T OR2T11 Silent p.L11L 0.21 TCGA-D3-A8GK-06 1 25784915 25784915 T A TMEM57 Missense_Mutation p.I229N 0.44 tolerated(0.49) benign(0.033) TCGA-D3-A8GK-06 1 26570724 26570724 C T CEP85 Silent p.P41P 0.58 TCGA-D3-A8GK-06 1 27224190 27224190 G A GPATCH3 Missense_Mutation p.R160W 0.25 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GK-06 1 27224191 27224191 G A GPATCH3 Silent p.T159T 0.24 TCGA-D3-A8GK-06 1 34118002 34118002 C T CSMD2 Missense_Mutation p.E1463K 0.39 deleterious(0.04) benign(0.145) TCGA-D3-A8GK-06 1 34276417 34276417 G A CSMD2 Missense_Mutation p.S418F 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 1 36552852 36552852 C T TEKT2 Silent p.F265F 0.53 TCGA-D3-A8GK-06 1 36859375 36859375 G A LSM10 Missense_Mutation p.P119L 0.35 tolerated_low_confidence(0.26) benign(0) TCGA-D3-A8GK-06 1 36941089 36941089 C T CSF3R Missense_Mutation p.E84K 0.43 tolerated(0.99) benign(0.001) TCGA-D3-A8GK-06 1 39802041 39802041 C T MACF1 Intron 0.36 TCGA-D3-A8GK-06 1 42048570 42048570 C T HIVEP3 Silent p.K633K 0.47 TCGA-D3-A8GK-06 1 43110444 43110444 G A CCDC30 Missense_Mutation p.R619Q 0.39 tolerated(0.07) benign(0.102) TCGA-D3-A8GK-06 1 44466679 44466679 A T SLC6A9 Missense_Mutation p.S535T 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GK-06 1 45965908 45965908 C T MMACHC 5'UTR 0.37 TCGA-D3-A8GK-06 1 46543240 46543240 G A PIK3R3 Silent p.F87F 0.45 TCGA-D3-A8GK-06 1 57185313 57185313 G A C1orf168 3'UTR 0.47 TCGA-D3-A8GK-06 1 75037430 75037430 C T C1orf173 Missense_Mutation p.G1322R 0.37 deleterious(0.04) possibly_damaging(0.537) TCGA-D3-A8GK-06 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.45 TCGA-D3-A8GK-06 1 77528851 77528851 C T ST6GALNAC5 Missense_Mutation p.S324L 0.35 benign(0.064) TCGA-D3-A8GK-06 1 91382528 91382528 G A ZNF644 Nonsense_Mutation p.R1271* 0.40 TCGA-D3-A8GK-06 1 94667522 94667522 T A ARHGAP29 Intron 0.39 TCGA-D3-A8GK-06 20 18794464 18794464 G A SCP2D1 Nonsense_Mutation p.W2* 0.87 TCGA-D3-A8GK-06 20 29625917 29625917 C T FRG1B Missense_Mutation p.S54L 0.04 deleterious(0.02) possibly_damaging(0.743) TCGA-D3-A8GK-06 20 29956478 29956478 C T DEFB118 Missense_Mutation p.P9S 0.53 tolerated_low_confidence(0.92) unknown(0) TCGA-D3-A8GK-06 20 34025281 34025281 G A GDF5 Missense_Mutation p.S143F 0.44 deleterious(0.04) benign(0.14) TCGA-D3-A8GK-06 20 34129906 34129906 C T ERGIC3 Silent p.F20F 0.50 TCGA-D3-A8GK-06 20 35207217 35207217 T G TGIF2 Missense_Mutation p.S14A 0.49 tolerated(0.51) benign(0.082) TCGA-D3-A8GK-06 20 35207218 35207218 C T TGIF2 Missense_Mutation p.S14F 0.49 tolerated(0.09) possibly_damaging(0.753) TCGA-D3-A8GK-06 20 35441196 35441196 A T SOGA1 Missense_Mutation p.F790I 0.40 tolerated(0.4) benign(0.343) TCGA-D3-A8GK-06 20 36851970 36851970 G A KIAA1755 Silent p.F746F 0.37 TCGA-D3-A8GK-06 20 39990330 39990330 C T EMILIN3 Missense_Mutation p.E627K 0.41 tolerated(0.08) possibly_damaging(0.905) TCGA-D3-A8GK-06 20 47865083 47865083 C T ZNFX1 Missense_Mutation p.R1493H 0.43 tolerated(0.23) benign(0.027) TCGA-D3-A8GK-06 20 47991512 47991512 G A KCNB1 Silent p.S195S 0.27 TCGA-D3-A8GK-06 20 49509386 49509386 G A ADNP Missense_Mutation p.T622I 0.47 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A8GK-06 20 49575365 49575365 C T MOCS3 5'UTR 0.51 TCGA-D3-A8GK-06 20 51871548 51871548 G A TSHZ2 Silent p.L517L 0.48 TCGA-D3-A8GK-06 20 53205033 53205033 C T DOK5 Silent p.L62L 0.49 TCGA-D3-A8GK-06 20 57828057 57828057 C T ZNF831 Missense_Mutation p.S1351F 0.31 deleterious(0.01) possibly_damaging(0.841) TCGA-D3-A8GK-06 20 60427864 60427864 C T CDH4 Silent p.L263L 0.26 TCGA-D3-A8GK-06 20 9371227 9371227 G A PLCB4 Missense_Mutation p.D430N 0.79 deleterious(0.02) benign(0.035) TCGA-D3-A8GK-06 21 10941916 10941916 G A TPTE Missense_Mutation p.P263S 0.13 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 21 11021192 11021192 G A BAGE2 RNA 0.08 TCGA-D3-A8GK-06 21 11038762 11038762 C T BAGE2 RNA 0.09 TCGA-D3-A8GK-06 21 19715949 19715949 G A TMPRSS15 Silent p.V434V 0.45 TCGA-D3-A8GK-06 21 33065667 33065667 C T SCAF4 Missense_Mutation p.E485K 0.33 benign(0.292) TCGA-D3-A8GK-06 21 39817410 39817410 G A ERG Silent p.V58V 0.39 TCGA-D3-A8GK-06 21 41668061 41668061 C T DSCAM Silent p.G701G 0.47 TCGA-D3-A8GK-06 21 47330935 47330935 C T PCBP3 Silent p.V197V 0.53 TCGA-D3-A8GK-06 22 18301795 18301795 T A MICAL3 Missense_Mutation p.D1211V 0.38 benign(0.026) TCGA-D3-A8GK-06 22 23742740 23742740 C T ZDHHC8P1 RNA 0.36 TCGA-D3-A8GK-06 22 26702019 26702019 G A SEZ6L Missense_Mutation p.G475R 0.37 tolerated(0.06) possibly_damaging(0.598) TCGA-D3-A8GK-06 22 40038857 40038857 C T CACNA1I Missense_Mutation p.S371F 0.24 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GK-06 22 40161412 40161412 G A ENTHD1 Silent p.P345P 0.51 TCGA-D3-A8GK-06 22 43614289 43614289 T A SCUBE1 Silent p.A621A 0.33 TCGA-D3-A8GK-06 2 100453941 100453941 G A AFF3 Missense_Mutation p.R332W 0.30 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GK-06 2 102000000 102000000 G A CREG2 Silent p.F202F 0.39 TCGA-D3-A8GK-06 2 103142759 103142759 G A SLC9A4 Silent p.G664G 0.51 TCGA-D3-A8GK-06 2 10350656 10350656 C T C2orf48 Missense_Mutation p.S138L 0.43 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-D3-A8GK-06 2 105959424 105959424 C T C2orf49 Missense_Mutation p.P129L 0.43 tolerated(0.05) benign(0.014) TCGA-D3-A8GK-06 2 108921994 108921994 C T SULT1C2 Missense_Mutation p.R252C 0.43 deleterious(0) benign(0.109) TCGA-D3-A8GK-06 2 11332345 11332345 T C ROCK2 Silent p.R1364R 0.52 TCGA-D3-A8GK-06 2 11919751 11919751 G A LPIN1 Missense_Mutation p.E362K 0.38 tolerated(0.12) probably_damaging(0.966) TCGA-D3-A8GK-06 2 120720256 120720256 C T PTPN4 Missense_Mutation p.T782I 0.45 tolerated(0.19) benign(0.194) TCGA-D3-A8GK-06 2 120720257 120720257 C T PTPN4 Silent p.T782T 0.44 TCGA-D3-A8GK-06 2 121106790 121106790 C T INHBB Silent p.V188V 0.42 TCGA-D3-A8GK-06 2 130832776 130832776 C T POTEF Missense_Mutation p.E757K 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.871) TCGA-D3-A8GK-06 2 131995797 131995797 G A POTEE Missense_Mutation p.D410N 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.539) TCGA-D3-A8GK-06 2 136540520 136540520 C T UBXN4 3'UTR 0.58 TCGA-D3-A8GK-06 2 136664933 136664933 G A DARS Missense_Mutation p.R487C 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 2 137990648 137990648 C T THSD7B Nonsense_Mutation p.Q699* 0.48 TCGA-D3-A8GK-06 2 138421075 138421075 G A THSD7B Silent p.G1530G 0.40 TCGA-D3-A8GK-06 2 141777525 141777525 G A LRP1B Missense_Mutation p.H646Y 0.45 benign(0.415) TCGA-D3-A8GK-06 2 143986212 143986212 C T ARHGAP15 Missense_Mutation p.S120F 0.31 deleterious(0) possibly_damaging(0.686) TCGA-D3-A8GK-06 2 149226647 149226647 A T MBD5 Missense_Mutation p.T379S 0.38 tolerated(0.85) possibly_damaging(0.486) TCGA-D3-A8GK-06 2 152470939 152470939 G A NEB Missense_Mutation p.P3818S 0.44 probably_damaging(1) TCGA-D3-A8GK-06 2 152487726 152487726 C T NEB Silent p.L3183L 0.44 TCGA-D3-A8GK-06 2 157439447 157439447 C T GPD2 3'UTR 0.49 TCGA-D3-A8GK-06 2 160193489 160193489 C T BAZ2B Silent p.Q1920Q 0.46 TCGA-D3-A8GK-06 2 163039957 163039957 G A FAP Silent p.F612F 0.38 TCGA-D3-A8GK-06 2 163082087 163082087 C G FAP Missense_Mutation p.G64A 0.44 deleterious(0.05) benign(0.002) TCGA-D3-A8GK-06 2 163291776 163291776 C T KCNH7 Missense_Mutation p.G629E 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 2 1652590 1652590 G A PXDN Missense_Mutation p.H988Y 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 2 168104984 168104984 C T XIRP2 Missense_Mutation p.S2361L 0.49 possibly_damaging(0.664) TCGA-D3-A8GK-06 2 169830229 169830229 C T ABCB11 Missense_Mutation p.G477E 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 2 170134312 170134312 T G LRP2 Missense_Mutation p.Y572S 0.41 probably_damaging(0.989) TCGA-D3-A8GK-06 2 170557842 170557842 G T PHOSPHO2 Missense_Mutation p.V121L 0.49 deleterious(0.01) probably_damaging(0.974) TCGA-D3-A8GK-06 2 179553445 179553445 G A TTN Missense_Mutation p.S10719F 0.43 TCGA-D3-A8GK-06 2 179577968 179577968 C T TTN Missense_Mutation p.E8965K 0.46 TCGA-D3-A8GK-06 2 179600331 179600331 G A TTN Missense_Mutation p.P4948S 0.21 TCGA-D3-A8GK-06 2 179632562 179632562 C T TTN Missense_Mutation p.G3132E 0.37 TCGA-D3-A8GK-06 2 179650594 179650594 C T TTN Missense_Mutation p.G784E 0.42 TCGA-D3-A8GK-06 2 188216681 188216681 A - CALCRL Frame_Shift_Del p.L379Wfs*17 0.29 TCGA-D3-A8GK-06 2 189904221 189904221 C T COL5A2 Silent p.G1234G 0.40 TCGA-D3-A8GK-06 2 192700850 192700850 C T SDPR Silent p.A359A 0.41 TCGA-D3-A8GK-06 2 202626505 202626505 C T ALS2 Missense_Mutation p.R71K 0.44 tolerated(0.96) benign(0.002) TCGA-D3-A8GK-06 2 206994875 206994875 C T NDUFS1 Missense_Mutation p.G563R 0.43 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GK-06 2 207823027 207823027 C T CPO Silent p.I90I 0.45 TCGA-D3-A8GK-06 2 21229812 21229812 G A APOB Missense_Mutation p.P3310S 0.52 possibly_damaging(0.885) TCGA-D3-A8GK-06 2 217234646 217234646 G A MARCH4 Missense_Mutation p.S113F 0.53 deleterious_low_confidence(0.03) benign(0.096) TCGA-D3-A8GK-06 2 220370718 220370718 C T GMPPA Missense_Mutation p.S306F 0.55 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GK-06 2 234102552 234102552 C T INPP5D Silent p.F835F 0.30 TCGA-D3-A8GK-06 2 234774953 234774953 G A MSL3P1 RNA 0.45 TCGA-D3-A8GK-06 2 235951812 235951812 C T SH3BP4 Missense_Mutation p.S800F 0.42 tolerated(0.63) possibly_damaging(0.474) TCGA-D3-A8GK-06 2 238269811 238269811 G A COL6A3 Missense_Mutation p.P2055S 0.33 benign(0.048) TCGA-D3-A8GK-06 2 239037384 239037384 G A ESPNL Missense_Mutation p.G418S 0.46 tolerated(0.52) benign(0.001) TCGA-D3-A8GK-06 2 241835096 241835096 C T C2orf54 Missense_Mutation p.E107K 0.33 tolerated(0.61) benign(0.085) TCGA-D3-A8GK-06 2 26698231 26698231 G A OTOF Missense_Mutation p.S1041F 0.42 deleterious(0.01) possibly_damaging(0.609) TCGA-D3-A8GK-06 2 29397246 29397246 G A CLIP4 Silent p.R577R 0.47 TCGA-D3-A8GK-06 2 32481905 32481905 G A NLRC4 5'UTR 0.67 TCGA-D3-A8GK-06 2 33740223 33740223 G A RASGRP3 Missense_Mutation p.G7E 0.40 tolerated(0.16) possibly_damaging(0.575) TCGA-D3-A8GK-06 2 36982087 36982087 G A VIT Missense_Mutation p.G100E 0.34 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GK-06 2 39251198 39251198 A T SOS1 Missense_Mutation p.S385R 0.43 tolerated(0.45) benign(0.077) TCGA-D3-A8GK-06 2 39251199 39251199 C T SOS1 Missense_Mutation p.S385N 0.43 tolerated(0.41) benign(0.202) TCGA-D3-A8GK-06 2 73493040 73493040 C T FBXO41 Missense_Mutation p.G396S 0.42 tolerated(0.75) benign(0.037) TCGA-D3-A8GK-06 2 73826571 73826571 C T ALMS1 Missense_Mutation p.A3863V 0.45 benign(0.015) TCGA-D3-A8GK-06 2 84658648 84658648 A G SUCLG1 Missense_Mutation p.L270S 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 2 88991216 88991216 G A RPIA 5'UTR 0.39 TCGA-D3-A8GK-06 2 89246822 89246823 AT - IGKV1-5 Frame_Shift_Del p.Y116Ffs*? 0.25 TCGA-D3-A8GK-06 2 98846579 98846579 C T VWA3B Silent p.V739V 0.57 TCGA-D3-A8GK-06 2 99013470 99013470 G A CNGA3 Missense_Mutation p.D613N 0.59 deleterious(0.01) possibly_damaging(0.691) TCGA-D3-A8GK-06 3 108705757 108705757 C T MORC1 Missense_Mutation p.E743K 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 3 121126388 121126388 G A STXBP5L Silent p.V986V 0.45 TCGA-D3-A8GK-06 3 121126389 121126389 G A STXBP5L Missense_Mutation p.V987I 0.44 tolerated(0.07) benign(0.099) TCGA-D3-A8GK-06 3 126126092 126126092 G A CCDC37 Missense_Mutation p.E43K 0.51 tolerated(1) benign(0) TCGA-D3-A8GK-06 3 129817199 129817199 G A AC083906.2 3'Flank 0.52 TCGA-D3-A8GK-06 3 130282288 130282288 G A COL6A6 Silent p.V147V 0.44 TCGA-D3-A8GK-06 3 130284302 130284302 G A COL6A6 Missense_Mutation p.E376K 0.38 tolerated(0.26) benign(0.024) TCGA-D3-A8GK-06 3 136240091 136240091 G A STAG1 Nonsense_Mutation p.Q214* 0.49 TCGA-D3-A8GK-06 3 138739242 138739242 G A PRR23B Silent p.L88L 0.26 TCGA-D3-A8GK-06 3 140407272 140407272 C T TRIM42 Missense_Mutation p.S583F 0.50 deleterious(0.05) benign(0.071) TCGA-D3-A8GK-06 3 14768478 14768478 A G C3orf20 Missense_Mutation p.K546R 0.43 tolerated(0.41) benign(0.078) TCGA-D3-A8GK-06 3 14770118 14770118 G A C3orf20 Silent p.K621K 0.27 TCGA-D3-A8GK-06 3 154856001 154856001 G A MME Missense_Mutation p.M277I 0.45 tolerated(0.26) benign(0.015) TCGA-D3-A8GK-06 3 155198913 155198913 C T PLCH1 Silent p.T1642T 0.57 TCGA-D3-A8GK-06 3 159711586 159711586 C T IL12A Silent p.I187I 0.46 TCGA-D3-A8GK-06 3 164750406 164750406 G A SI Silent p.I880I 0.37 TCGA-D3-A8GK-06 3 164786954 164786954 C T SI Nonsense_Mutation p.W95* 0.54 TCGA-D3-A8GK-06 3 164907340 164907340 C T SLITRK3 Missense_Mutation p.D427N 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 3 167272570 167272570 C T WDR49 Missense_Mutation p.G223E 0.42 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GK-06 3 168834174 168834174 G A MECOM Missense_Mutation p.P373S 0.51 tolerated(0.07) possibly_damaging(0.612) TCGA-D3-A8GK-06 3 175473057 175473057 G A NAALADL2 Silent p.R680R 0.53 TCGA-D3-A8GK-06 3 183873475 183873475 C T DVL3 Missense_Mutation p.L18F 0.42 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GK-06 3 184026599 184026599 C T PSMD2 Missense_Mutation p.A883V 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GK-06 3 185997729 185997729 C T DGKG Missense_Mutation p.D235N 0.42 tolerated(0.1) benign(0.021) TCGA-D3-A8GK-06 3 197597085 197597085 C T LRCH3 Missense_Mutation p.S643F 0.48 deleterious(0.01) benign(0.188) TCGA-D3-A8GK-06 3 38968382 38968382 T C SCN11A Missense_Mutation p.K177E 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 3 39554883 39554883 G A MOBP Silent p.R72R 0.36 TCGA-D3-A8GK-06 3 40464347 40464347 C A ENTPD3 Missense_Mutation p.P280T 0.37 tolerated(0.61) benign(0.002) TCGA-D3-A8GK-06 3 41937023 41937023 G A ULK4 Missense_Mutation p.P522S 0.27 tolerated(0.38) benign(0.013) TCGA-D3-A8GK-06 3 42916793 42916793 G A CYP8B1 Silent p.F172F 0.54 TCGA-D3-A8GK-06 3 48664107 48664107 G A SLC26A6 Silent p.D695D 0.46 TCGA-D3-A8GK-06 3 51376365 51376365 G A DOCK3 Splice_Site p.X1225_splice 0.56 TCGA-D3-A8GK-06 3 52471601 52471601 G A SEMA3G Missense_Mutation p.S607F 0.41 deleterious(0.01) benign(0.048) TCGA-D3-A8GK-06 3 53753799 53753799 C T CACNA1D Missense_Mutation p.S519F 0.41 tolerated(0.12) probably_damaging(0.968) TCGA-D3-A8GK-06 3 53852151 53852151 G A CHDH Missense_Mutation p.P480S 0.48 tolerated(0.1) benign(0.068) TCGA-D3-A8GK-06 3 54913401 54913401 G A CACNA2D3 Missense_Mutation p.D603N 0.43 tolerated(0.09) probably_damaging(0.954) TCGA-D3-A8GK-06 3 62518605 62518605 G A CADPS Silent p.I744I 0.26 TCGA-D3-A8GK-06 3 62636524 62636524 C T CADPS Missense_Mutation p.E401K 0.33 deleterious(0.01) benign(0.292) TCGA-D3-A8GK-06 3 74350685 74350685 G A CNTN3 Silent p.I653I 0.45 TCGA-D3-A8GK-06 3 75471300 75471300 G A FAM86DP RNA 0.52 TCGA-D3-A8GK-06 3 75679956 75679956 C T MIR1324 RNA 0.18 TCGA-D3-A8GK-06 3 87018049 87018049 G A VGLL3 Missense_Mutation p.P210S 0.41 tolerated(0.78) benign(0.03) TCGA-D3-A8GK-06 3 88189073 88189073 G A ZNF654 Missense_Mutation p.G205S 0.36 deleterious(0.05) possibly_damaging(0.828) TCGA-D3-A8GK-06 3 9514939 9514939 G A SETD5 Missense_Mutation p.R1072Q 0.40 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 3 97888025 97888025 G A OR5H15 Missense_Mutation p.G161E 0.41 deleterious(0.01) possibly_damaging(0.616) TCGA-D3-A8GK-06 3 99514033 99514033 G A COL8A1 Missense_Mutation p.E430K 0.33 tolerated(0.08) unknown(0) TCGA-D3-A8GK-06 3 9959647 9959647 T C IL17RC Silent p.A127A 0.47 TCGA-D3-A8GK-06 3 9959648 9959648 C T IL17RC Missense_Mutation p.P128S 0.49 tolerated(0.14) benign(0.194) TCGA-D3-A8GK-06 4 100231995 100231995 C T ADH1B Missense_Mutation p.D344N 0.43 deleterious(0.03) benign(0.427) TCGA-D3-A8GK-06 4 104084687 104084687 C T CENPE Silent p.S557S 0.44 TCGA-D3-A8GK-06 4 104098106 104098106 G A CENPE Missense_Mutation p.T447I 0.53 possibly_damaging(0.884) TCGA-D3-A8GK-06 4 120548355 120548355 G A PDE5A Intron 0.24 TCGA-D3-A8GK-06 4 151145695 151145695 C T DCLK2 Silent p.A445A 0.37 TCGA-D3-A8GK-06 4 153247205 153247205 A G FBXW7 Missense_Mutation p.C533R 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 4 153249511 153249511 C A FBXW7 Nonsense_Mutation p.G423* 0.36 TCGA-D3-A8GK-06 4 154237087 154237087 A G TRIM2 Missense_Mutation p.D573G 0.47 deleterious(0.05) probably_damaging(0.91) TCGA-D3-A8GK-06 4 154557633 154557633 C T KIAA0922 Missense_Mutation p.R1580C 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GK-06 4 155719031 155719031 G A RBM46 Missense_Mutation p.E74K 0.44 deleterious(0.02) probably_damaging(0.977) TCGA-D3-A8GK-06 4 155719082 155719082 C T RBM46 Nonsense_Mutation p.R91* 0.46 TCGA-D3-A8GK-06 4 162459445 162459445 G A FSTL5 Silent p.G395G 0.51 TCGA-D3-A8GK-06 4 164271626 164271626 G A NPY5R Missense_Mutation p.M67I 0.43 tolerated(0.51) benign(0.001) TCGA-D3-A8GK-06 4 166024237 166024237 A T TMEM192 Missense_Mutation p.D13E 0.39 tolerated(0.31) benign(0.094) TCGA-D3-A8GK-06 4 166978377 166978377 C A TLL1 Missense_Mutation p.Q588K 0.46 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A8GK-06 4 169383082 169383082 C T DDX60L Missense_Mutation p.G125E 0.37 tolerated(0.06) possibly_damaging(0.613) TCGA-D3-A8GK-06 4 175898553 175898553 C A ADAM29 Nonsense_Mutation p.S626* 0.44 TCGA-D3-A8GK-06 4 178243671 178243671 T C NEIL3 Missense_Mutation p.V72A 0.47 tolerated(0.18) benign(0.009) TCGA-D3-A8GK-06 4 186379898 186379898 G A CCDC110 Nonsense_Mutation p.Q615* 0.47 TCGA-D3-A8GK-06 4 3213748 3213748 T - HTT Frame_Shift_Del p.E2170Rfs*2 0.33 TCGA-D3-A8GK-06 4 40438613 40438613 C T RBM47 Missense_Mutation p.G392E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 4 41686484 41686484 G A LIMCH1 Missense_Mutation p.D922N 0.47 tolerated(0.43) benign(0.003) TCGA-D3-A8GK-06 4 41691585 41691585 C T LIMCH1 Missense_Mutation p.P1019L 0.38 deleterious(0) possibly_damaging(0.555) TCGA-D3-A8GK-06 4 47538712 47538712 C T ATP10D Missense_Mutation p.P385S 0.40 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 4 47570967 47570967 G T ATP10D Silent p.R989R 0.55 TCGA-D3-A8GK-06 4 47938850 47938850 C T CNGA1 Missense_Mutation p.G623E 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GK-06 4 53379 53379 G A ZNF595 5'UTR 0.08 TCGA-D3-A8GK-06 4 56759831 56759831 T C EXOC1 Missense_Mutation p.L613S 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 4 70074164 70074164 C T UGT2B11 Missense_Mutation p.G303S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 4 70346405 70346405 G A UGT2B4 Silent p.L512L 0.49 TCGA-D3-A8GK-06 4 76797672 76797672 G A PPEF2 Missense_Mutation p.S363F 0.56 tolerated(0.19) benign(0.224) TCGA-D3-A8GK-06 4 77252533 77252533 G T CCDC158 Missense_Mutation p.S965Y 0.47 tolerated(0.47) benign(0.165) TCGA-D3-A8GK-06 4 79394615 79394615 C T FRAS1 Missense_Mutation p.R2516C 0.48 probably_damaging(0.991) TCGA-D3-A8GK-06 4 79418010 79418010 G A FRAS1 Missense_Mutation p.E3004K 0.46 probably_damaging(1) TCGA-D3-A8GK-06 4 861062 861062 G A GAK Silent p.L852L 0.40 TCGA-D3-A8GK-06 4 88414952 88414952 T A SPARCL1 Missense_Mutation p.N334Y 0.49 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GK-06 4 9784211 9784211 C T DRD5 Silent p.A186A 0.55 TCGA-D3-A8GK-06 5 118970759 118970759 G A FAM170A 3'UTR 0.32 TCGA-D3-A8GK-06 5 121187647 121187647 G A FTMT 5'Flank 0.43 TCGA-D3-A8GK-06 5 123983517 123983517 A T ZNF608 Missense_Mutation p.L854I 0.55 tolerated(0.28) benign(0.149) TCGA-D3-A8GK-06 5 126790264 126790264 T C MEGF10 Missense_Mutation p.F996S 0.38 tolerated(0.43) benign(0.009) TCGA-D3-A8GK-06 5 135651464 135651464 C T TRPC7 Missense_Mutation p.D262N 0.43 deleterious(0.05) benign(0.27) TCGA-D3-A8GK-06 5 13719142 13719142 G A DNAH5 Silent p.I4116I 0.44 TCGA-D3-A8GK-06 5 137275811 137275811 C T PKD2L2 Missense_Mutation p.S606F 0.45 deleterious_low_confidence(0) benign(0.136) TCGA-D3-A8GK-06 5 13807782 13807782 C T DNAH5 Missense_Mutation p.G2602E 0.24 probably_damaging(0.982) TCGA-D3-A8GK-06 5 139217353 139217353 C T PSD2 Silent p.F603F 0.35 TCGA-D3-A8GK-06 5 140180862 140180862 G A PCDHA3 Missense_Mutation p.G27E 0.44 deleterious_low_confidence(0.01) benign(0.301) TCGA-D3-A8GK-06 5 140227918 140227918 C T PCDHA9 5'UTR 0.54 TCGA-D3-A8GK-06 5 140307330 140307330 C T PCDHAC1 Missense_Mutation p.H285Y 0.36 tolerated(0.8) benign(0.013) TCGA-D3-A8GK-06 5 140503119 140503119 C T PCDHB4 Silent p.F513F 0.38 TCGA-D3-A8GK-06 5 140711937 140711937 C T PCDHGA1 Silent p.I562I 0.42 TCGA-D3-A8GK-06 5 140751257 140751257 C T PCDHGB3 Silent p.L432L 0.33 TCGA-D3-A8GK-06 5 142281548 142281548 G A ARHGAP26 Missense_Mutation p.E216K 0.37 deleterious(0) possibly_damaging(0.635) TCGA-D3-A8GK-06 5 145465069 145465069 G A PLAC8L1 Silent p.S116S 0.38 TCGA-D3-A8GK-06 5 146080689 146080689 C T PPP2R2B Silent p.T32T 0.43 TCGA-D3-A8GK-06 5 147719230 147719230 G A SPINK9 Silent p.K72K 0.60 TCGA-D3-A8GK-06 5 149576836 149576836 G A SLC6A7 Nonsense_Mutation p.W194* 0.68 TCGA-D3-A8GK-06 5 150029378 150029378 C T SYNPO Missense_Mutation p.S758F 0.46 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 5 151784706 151784706 G A NMUR2 5'UTR 0.40 TCGA-D3-A8GK-06 5 156608009 156608009 G A ITK Silent p.L7L 0.48 TCGA-D3-A8GK-06 5 156751021 156751021 C T CYFIP2 Silent p.V562V 0.37 TCGA-D3-A8GK-06 5 170148799 170148799 C T KCNIP1 Intron 0.38 TCGA-D3-A8GK-06 5 174868930 174868930 G A DRD1 Silent p.I391I 0.39 TCGA-D3-A8GK-06 5 176079809 176079809 C T TSPAN17 Silent p.F117F 0.46 TCGA-D3-A8GK-06 5 179046361 179046361 C A HNRNPH1 Missense_Mutation p.G149W 0.42 deleterious(0.01) probably_damaging(0.957) TCGA-D3-A8GK-06 5 31294113 31294113 C T CDH6 Silent p.I91I 0.43 TCGA-D3-A8GK-06 5 41033239 41033239 G A MROH2B Silent p.F755F 0.49 TCGA-D3-A8GK-06 5 42801491 42801491 G A CCDC152 3'UTR 0.48 TCGA-D3-A8GK-06 5 43246107 43246107 G A NIM1K Missense_Mutation p.R77Q 0.52 deleterious(0.05) possibly_damaging(0.705) TCGA-D3-A8GK-06 5 465883 465883 C T EXOC3 Silent p.A663A 0.33 TCGA-D3-A8GK-06 5 54468771 54468771 G A CDC20B Silent p.L20L 0.33 TCGA-D3-A8GK-06 5 6622138 6622138 G T NSUN2 Missense_Mutation p.P205T 0.40 tolerated(0.14) possibly_damaging(0.597) TCGA-D3-A8GK-06 5 70806623 70806623 C T BDP1 Missense_Mutation p.S1235F 0.37 tolerated(0.14) benign(0.081) TCGA-D3-A8GK-06 5 7869254 7869254 C T MTRR Missense_Mutation p.A3V 0.42 tolerated_low_confidence(0.88) benign(0.002) TCGA-D3-A8GK-06 5 79030877 79030877 C T CMYA5 Missense_Mutation p.P2097S 0.40 benign(0.01) TCGA-D3-A8GK-06 5 80409582 80409582 G A RASGRF2 Silent p.Q771Q 0.38 TCGA-D3-A8GK-06 5 90072290 90072290 C T GPR98 Missense_Mutation p.R4142W 0.35 possibly_damaging(0.876) TCGA-D3-A8GK-06 5 90106721 90106721 C T GPR98 Missense_Mutation p.S5215F 0.48 benign(0.029) TCGA-D3-A8GK-06 6 102266332 102266332 C T GRIK2 Missense_Mutation p.R431C 0.30 deleterious(0.01) possibly_damaging(0.826) TCGA-D3-A8GK-06 6 116784905 116784905 T A FAM26F 3'UTR 0.39 TCGA-D3-A8GK-06 6 119669693 119669693 T A MAN1A1 Missense_Mutation p.I180F 0.43 tolerated(0.06) benign(0.121) TCGA-D3-A8GK-06 6 12296380 12296380 G A EDN1 3'UTR 0.96 TCGA-D3-A8GK-06 6 129511379 129511379 T C LAMA2 Silent p.R499R 0.32 TCGA-D3-A8GK-06 6 135254080 135254080 G A ALDH8A1 Missense_Mutation p.S228F 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 6 136599018 136599018 C T BCLAF1 Missense_Mutation p.G334E 0.13 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GK-06 6 145075928 145075928 C T UTRN Missense_Mutation p.L2810F 0.51 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GK-06 6 153042927 153042927 G A MYCT1 Missense_Mutation p.G83R 0.39 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GK-06 6 153293462 153293462 G A FBXO5 Missense_Mutation p.S346F 0.46 deleterious(0.02) possibly_damaging(0.778) TCGA-D3-A8GK-06 6 158925164 158925164 C T TULP4 Missense_Mutation p.T1490I 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 6 159654529 159654529 G A FNDC1 Silent p.R995R 0.27 TCGA-D3-A8GK-06 6 161139371 161139371 G A PLG Missense_Mutation p.G278E 0.35 deleterious(0.03) benign(0.06) TCGA-D3-A8GK-06 6 17772234 17772234 G A KIF13A Missense_Mutation p.P1461S 0.96 deleterious(0.01) possibly_damaging(0.844) TCGA-D3-A8GK-06 6 29408213 29408213 C T OR10C1 Silent p.L141L 0.95 TCGA-D3-A8GK-06 6 32064737 32064737 T C TNXB Missense_Mutation p.N298S 0.89 benign(0.115) TCGA-D3-A8GK-06 6 33246327 33246327 G A B3GALT4 Silent p.Q377Q 0.92 TCGA-D3-A8GK-06 6 35477524 35477524 G A TULP1 Missense_Mutation p.S202F 0.87 deleterious(0.01) possibly_damaging(0.553) TCGA-D3-A8GK-06 6 41248704 41248704 G A TREM1 Silent p.I198I 0.95 TCGA-D3-A8GK-06 6 41621076 41621076 C T MDFI Silent p.I168I 0.89 TCGA-D3-A8GK-06 6 43251947 43251947 C T TTBK1 Missense_Mutation p.P1157S 1.00 probably_damaging(0.996) TCGA-D3-A8GK-06 6 43403581 43403581 C T ABCC10 Silent p.S567S 0.98 TCGA-D3-A8GK-06 6 47549790 47549790 C T CD2AP Missense_Mutation p.P366L 0.92 tolerated(0.07) benign(0.002) TCGA-D3-A8GK-06 6 51750668 51750668 G A PKHD1 Silent p.A2404A 0.42 TCGA-D3-A8GK-06 6 53761303 53761303 A T LRRC1 Missense_Mutation p.N152Y 0.35 deleterious(0.01) benign(0.031) TCGA-D3-A8GK-06 6 55378855 55378855 G A HMGCLL1 Missense_Mutation p.P208L 0.40 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GK-06 6 55739739 55739739 G A BMP5 5'UTR 0.42 TCGA-D3-A8GK-06 6 75875421 75875421 G A COL12A1 Missense_Mutation p.P929S 0.47 benign(0.21) TCGA-D3-A8GK-06 6 89927085 89927085 G A GABRR1 5'UTR 0.45 TCGA-D3-A8GK-06 6 90576950 90576968 TTAAAAGTTTGTTGCAAGG - CASP8AP2 RNA 0.41 TCGA-D3-A8GK-06 7 100552935 100552935 G A MUC3A Missense_Mutation p.G527E 0.20 tolerated(0.07) benign(0.277) TCGA-D3-A8GK-06 7 100865991 100865991 C T ZNHIT1 Silent p.D43D 0.47 TCGA-D3-A8GK-06 7 100865992 100865992 C T ZNHIT1 Missense_Mutation p.P44S 0.46 deleterious(0.04) probably_damaging(0.994) TCGA-D3-A8GK-06 7 103202377 103202377 C T RELN Nonsense_Mutation p.W1745* 0.57 TCGA-D3-A8GK-06 7 103206834 103206834 C T RELN Silent p.L1591L 0.48 TCGA-D3-A8GK-06 7 103389883 103389883 G A RELN Missense_Mutation p.P216S 0.41 tolerated(0.84) benign(0.245) TCGA-D3-A8GK-06 7 103417075 103417075 C T RELN Splice_Site p.X158_splice 0.43 TCGA-D3-A8GK-06 7 106768735 106768735 G A PRKAR2B Missense_Mutation p.D159N 0.41 deleterious(0.01) possibly_damaging(0.867) TCGA-D3-A8GK-06 7 112112905 112112905 C T IFRD1 Missense_Mutation p.R419C 0.54 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GK-06 7 124463970 124463970 G A POT1 3'UTR 0.34 TCGA-D3-A8GK-06 7 127224783 127224783 C G GCC1 Missense_Mutation p.G152R 0.47 tolerated(0.21) benign(0.054) TCGA-D3-A8GK-06 7 127224785 127224785 C A GCC1 Missense_Mutation p.G151V 0.49 deleterious(0.03) benign(0.093) TCGA-D3-A8GK-06 7 137761216 137761216 A T AKR1D1 5'Flank 0.50 TCGA-D3-A8GK-06 7 138522699 138522699 G A KIAA1549 Silent p.L1935L 0.27 TCGA-D3-A8GK-06 7 141736655 141736655 C T MGAM Silent p.S703S 0.35 TCGA-D3-A8GK-06 7 142045779 142045779 G A TRBV4-2 Missense_Mutation p.E103K 0.24 tolerated(0.08) possibly_damaging(0.596) TCGA-D3-A8GK-06 7 142124273 142124273 C T TRBV6-8 Missense_Mutation p.A69T 0.52 tolerated(0.38) benign(0.005) TCGA-D3-A8GK-06 7 142124340 142124340 C T TRBV6-8 Missense_Mutation p.M46I 0.37 tolerated(0.06) benign(0.137) TCGA-D3-A8GK-06 7 143453230 143453230 C T CTAGE6 Missense_Mutation p.D508N 0.17 tolerated(0.17) possibly_damaging(0.835) TCGA-D3-A8GK-06 7 143556184 143556184 G A FAM115A Silent p.L746L 0.27 TCGA-D3-A8GK-06 7 150174815 150174815 G A GIMAP8 Missense_Mutation p.E649K 0.51 tolerated(0.28) benign(0.033) TCGA-D3-A8GK-06 7 151927078 151927078 C T KMT2C Missense_Mutation p.G969E 0.06 probably_damaging(1) TCGA-D3-A8GK-06 7 158534351 158534351 G A ESYT2 Silent p.D704D 0.46 TCGA-D3-A8GK-06 7 1855673 1855673 G A MAD1L1 3'UTR 0.56 TCGA-D3-A8GK-06 7 20421418 20421418 C T ITGB8 Silent p.L290L 0.33 TCGA-D3-A8GK-06 7 24745936 24745936 G A DFNA5 Silent p.P350P 0.30 TCGA-D3-A8GK-06 7 24846454 24846454 C T OSBPL3 Missense_Mutation p.M795I 0.33 deleterious(0.02) benign(0.001) TCGA-D3-A8GK-06 7 29111955 29111955 C T CPVL Missense_Mutation p.G232R 0.56 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 7 2962835 2962835 G A CARD11 Silent p.F691F 0.78 TCGA-D3-A8GK-06 7 2984091 2984091 G A CARD11 Silent p.L147L 0.64 TCGA-D3-A8GK-06 7 34182934 34182934 G A BMPER Missense_Mutation p.G613D 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GK-06 7 4247798 4247798 C T SDK1 Missense_Mutation p.P1761L 0.70 tolerated(0.18) benign(0) TCGA-D3-A8GK-06 7 45010203 45010203 A G MYO1G Missense_Mutation p.F402S 0.25 deleterious(0) possibly_damaging(0.807) TCGA-D3-A8GK-06 7 71252689 71252689 G A CALN1 3'UTR 0.44 TCGA-D3-A8GK-06 7 74197924 74197924 G C NCF1 Missense_Mutation p.E211Q 0.50 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GK-06 7 7495742 7495742 C T COL28A1 Missense_Mutation p.G435E 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 7 7495743 7495743 C T COL28A1 Missense_Mutation p.G435R 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 7 76054403 76054403 C T ZP3 Missense_Mutation p.P41L 0.20 deleterious(0) benign(0.391) TCGA-D3-A8GK-06 7 82430904 82430904 C T PCLO Silent p.G4979G 0.45 TCGA-D3-A8GK-06 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.42 unknown(0) TCGA-D3-A8GK-06 7 82586104 82586104 G A PCLO Missense_Mutation p.L1389F 0.41 unknown(0) TCGA-D3-A8GK-06 7 87912363 87912363 G A STEAP4 Missense_Mutation p.P193S 0.34 deleterious(0.02) probably_damaging(0.978) TCGA-D3-A8GK-06 7 90747427 90747427 G A CDK14 Missense_Mutation p.G430R 0.44 tolerated(0.09) possibly_damaging(0.868) TCGA-D3-A8GK-06 7 91622350 91622350 G A AKAP9 Missense_Mutation p.G186E 0.39 probably_damaging(1) TCGA-D3-A8GK-06 7 98608735 98608735 G C TRRAP Missense_Mutation p.E3653Q 0.32 benign(0.173) TCGA-D3-A8GK-06 8 104897782 104897782 G A RIMS2 Missense_Mutation p.E319K 0.65 deleterious_low_confidence(0) possibly_damaging(0.492) TCGA-D3-A8GK-06 8 105026793 105026793 G A RIMS2 Missense_Mutation p.R1095Q 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A8GK-06 8 108264186 108264186 C T ANGPT1 Missense_Mutation p.G465E 0.36 tolerated(0.29) probably_damaging(1) TCGA-D3-A8GK-06 8 110467027 110467027 C T PKHD1L1 Missense_Mutation p.P2274S 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GK-06 8 120592356 120592356 C T ENPP2 Missense_Mutation p.E646K 0.45 tolerated(0.96) benign(0.013) TCGA-D3-A8GK-06 8 125463825 125463825 T A TRMT12 Missense_Mutation p.F219L 0.48 tolerated(0.35) benign(0.065) TCGA-D3-A8GK-06 8 128429029 128429029 G A POU5F1B Silent p.G306G 0.40 TCGA-D3-A8GK-06 8 130854297 130854297 T A FAM49B 3'UTR 0.56 TCGA-D3-A8GK-06 8 130854298 130854298 G A FAM49B 3'UTR 0.55 TCGA-D3-A8GK-06 8 131916027 131916027 C T ADCY8 Silent p.G634G 0.59 TCGA-D3-A8GK-06 8 133492799 133492799 C T KCNQ3 5'UTR 0.38 TCGA-D3-A8GK-06 8 139163525 139163525 G A FAM135B Missense_Mutation p.P1065S 0.51 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GK-06 8 143603368 143603368 C T BAI1 Silent p.L1023L 0.36 TCGA-D3-A8GK-06 8 144943662 144943662 G A EPPK1 Nonsense_Mutation p.Q1254* 0.43 TCGA-D3-A8GK-06 8 144994332 144994332 G A PLEC Silent p.A3356A 0.46 TCGA-D3-A8GK-06 8 18729442 18729442 C T PSD3 Missense_Mutation p.G311E 0.36 tolerated_low_confidence(0.23) benign(0.038) TCGA-D3-A8GK-06 8 18729443 18729443 C T PSD3 Missense_Mutation p.G311R 0.35 tolerated_low_confidence(0.12) benign(0.038) TCGA-D3-A8GK-06 8 22138946 22138946 G A PIWIL2 Missense_Mutation p.E115K 0.51 tolerated_low_confidence(0.16) benign(0.002) TCGA-D3-A8GK-06 8 3216674 3216674 C T CSMD1 Missense_Mutation p.A1102T 0.36 possibly_damaging(0.903) TCGA-D3-A8GK-06 8 33318958 33318958 G A FUT10 Nonsense_Mutation p.Q5* 0.34 TCGA-D3-A8GK-06 8 39068720 39068720 C T ADAM32 Silent p.F370F 0.42 TCGA-D3-A8GK-06 8 39845439 39845439 T A IDO2 Missense_Mutation p.F180I 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 8 41530063 41530063 G A ANK1 Silent p.I1676I 0.35 TCGA-D3-A8GK-06 8 41552701 41552701 C T ANK1 Missense_Mutation p.D1078N 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GK-06 8 51664567 51664567 C T SNTG1 Missense_Mutation p.L431F 0.26 deleterious(0.03) benign(0.396) TCGA-D3-A8GK-06 8 52366155 52366155 C T PXDNL Silent p.R391R 0.37 TCGA-D3-A8GK-06 8 55534133 55534133 G A RP1 Missense_Mutation p.G203R 0.43 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GK-06 8 55542905 55542905 G A RP1 Missense_Mutation p.D2155N 0.47 tolerated(0.09) possibly_damaging(0.732) TCGA-D3-A8GK-06 8 73480468 73480468 T C KCNB2 Missense_Mutation p.F167L 0.39 deleterious(0.02) benign(0.077) TCGA-D3-A8GK-06 8 86157964 86157964 C T CA13 5'UTR 0.56 TCGA-D3-A8GK-06 8 9590901 9590901 C G TNKS Missense_Mutation p.L754V 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-D3-A8GK-06 8 97345784 97345784 G A PTDSS1 Missense_Mutation p.G471E 0.46 tolerated_low_confidence(0.45) benign(0.12) TCGA-D3-A8GK-06 9 104357149 104357149 C T PPP3R2 Missense_Mutation p.E22K 0.47 deleterious(0) possibly_damaging(0.62) TCGA-D3-A8GK-06 9 114152296 114152296 C G KIAA0368 Missense_Mutation p.A1261P 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 9 115171301 115171301 C G HSDL2 Missense_Mutation p.A132G 0.45 deleterious(0) benign(0.116) TCGA-D3-A8GK-06 9 116022763 116022763 C T SLC31A1 3'UTR 0.47 TCGA-D3-A8GK-06 9 116854241 116854241 G A KIF12 Missense_Mutation p.A481V 0.42 tolerated_low_confidence(0.06) benign(0.099) TCGA-D3-A8GK-06 9 117849509 117849509 G A TNC Silent p.F167F 0.62 TCGA-D3-A8GK-06 9 118949658 118949658 G A PAPPA Missense_Mutation p.G214D 0.53 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 9 125316378 125316378 G A OR1N2 Silent p.R310R 0.42 TCGA-D3-A8GK-06 9 130687490 130687490 G A PIP5KL1 Silent p.F271F 0.55 TCGA-D3-A8GK-06 9 130984577 130984577 C T DNM1 Silent p.F317F 0.60 TCGA-D3-A8GK-06 9 131361316 131361316 C A SPTAN1 Intron 0.46 TCGA-D3-A8GK-06 9 135527859 135527859 G A DDX31 Silent p.A308A 0.61 TCGA-D3-A8GK-06 9 139272374 139272374 G A SNAPC4 Missense_Mutation p.P1302L 0.39 deleterious(0) benign(0.252) TCGA-D3-A8GK-06 9 139369486 139369486 T A SEC16A Missense_Mutation p.E861V 0.52 deleterious(0) possibly_damaging(0.663) TCGA-D3-A8GK-06 9 140058428 140058428 G A GRIN1 Intron 0.60 TCGA-D3-A8GK-06 9 140880946 140880946 C T CACNA1B Silent p.F617F 0.64 TCGA-D3-A8GK-06 9 21350471 21350471 G A IFNA6 Missense_Mutation p.S139F 0.41 deleterious(0.02) possibly_damaging(0.749) TCGA-D3-A8GK-06 9 23701490 23701490 T C ELAVL2 Silent p.V200V 0.43 TCGA-D3-A8GK-06 9 27158040 27158040 G A TEK Nonsense_Mutation p.W88* 0.42 TCGA-D3-A8GK-06 9 73151835 73151835 G A TRPM3 Silent p.T1386T 0.42 TCGA-D3-A8GK-06 9 77407565 77407565 G A TRPM6 Missense_Mutation p.P838L 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GK-06 9 8500886 8500886 G A PTPRD Missense_Mutation p.P666S 0.45 tolerated(0.33) benign(0) TCGA-D3-A8GK-06 9 86585231 86585231 T C HNRNPK Missense_Mutation p.I403V 0.30 deleterious(0.01) possibly_damaging(0.524) TCGA-D3-A8GK-06 9 87317096 87317096 T C NTRK2 Silent p.L79L 0.37 TCGA-D3-A8GK-06 9 88589906 88589906 G A NAA35 Missense_Mutation p.G181R 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GK-06 9 88589907 88589907 G A NAA35 Missense_Mutation p.G181E 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GK-06 9 95646201 95646201 C T RP11-526D8.7 Intron 0.59 TCGA-D3-A8GK-06 X 114141567 114141567 C T HTR2C Silent p.I322I 0.92 TCGA-D3-A8GK-06 X 117702055 117702055 C T DOCK11 Missense_Mutation p.T322I 0.94 tolerated(0.07) possibly_damaging(0.905) TCGA-D3-A8GK-06 X 123805609 123805609 C T TENM1 Silent p.G364G 0.93 TCGA-D3-A8GK-06 X 129518927 129518927 G A GPR119 Silent p.F165F 0.97 TCGA-D3-A8GK-06 X 134856864 134856864 G A CT45A1 3'UTR 0.08 TCGA-D3-A8GK-06 X 140995692 140995692 C T MAGEC1 Silent p.F834F 0.89 TCGA-D3-A8GK-06 X 141290782 141290782 G T MAGEC2 Missense_Mutation p.S331Y 0.89 tolerated(1) benign(0.423) TCGA-D3-A8GK-06 X 1422896 1422896 G A CSF2RA Missense_Mutation p.G377S 0.44 tolerated(0.14) benign(0.401) TCGA-D3-A8GK-06 X 1422897 1422897 G A CSF2RA Missense_Mutation p.G377D 0.44 deleterious(0.03) probably_damaging(0.947) TCGA-D3-A8GK-06 X 142717340 142717340 C T SLITRK4 Missense_Mutation p.E529K 0.94 tolerated(0.09) benign(0.257) TCGA-D3-A8GK-06 X 150773146 150773146 G A PASD1 Silent p.R19R 0.94 TCGA-D3-A8GK-06 X 151092454 151092454 C T MAGEA4 Silent p.F106F 0.89 TCGA-D3-A8GK-06 X 151532933 151532933 G A GABRA3 Missense_Mutation p.P37L 0.93 tolerated_low_confidence(0.39) benign(0) TCGA-D3-A8GK-06 X 154157116 154157116 C T F8 Missense_Mutation p.R1650K 0.92 tolerated(1) benign(0) TCGA-D3-A8GK-06 X 19049144 19049144 G T GPR64 Missense_Mutation p.Q106K 0.97 tolerated_low_confidence(0.08) benign(0.067) TCGA-D3-A8GK-06 X 2343242 2343242 G A DHRSX Silent p.I71I 0.45 TCGA-D3-A8GK-06 X 3235416 3235416 G A MXRA5 Silent p.F2102F 0.89 TCGA-D3-A8GK-06 X 32429969 32429969 G A DMD Missense_Mutation p.S1378F 0.90 probably_damaging(0.917) TCGA-D3-A8GK-06 X 37586891 37586891 C T XK Missense_Mutation p.L171F 1.00 tolerated(0.31) benign(0.005) TCGA-D3-A8GK-06 X 41203370 41203370 G A DDX3X Missense_Mutation p.E285K 0.94 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GK-06 X 44703544 44703544 G A DUSP21 Missense_Mutation p.V56M 0.86 tolerated(0.1) benign(0.025) TCGA-D3-A8GK-06 X 47068974 47068974 C T UBA1 Intron 1.00 TCGA-D3-A8GK-06 X 49029612 49029612 T C PLP2 Missense_Mutation p.I78T 0.94 deleterious(0) possibly_damaging(0.828) TCGA-D3-A8GK-06 X 51076310 51076310 T C NUDT10 Nonstop_Mutation p.*165Qext*1 0.90 TCGA-D3-A8GK-06 X 54783661 54783661 C T ITIH6 Missense_Mutation p.G949D 0.93 tolerated(0.16) benign(0.077) TCGA-D3-A8GK-06 X 55249163 55249163 T C PAGE5 Silent p.T120T 0.86 TCGA-D3-A8GK-06 X 70072935 70072935 C T TEX11 Silent p.K173K 0.79 TCGA-D3-A8GK-06 X 73524524 73524524 C T ZCCHC13 Silent p.I141I 0.86 TCGA-D3-A8GK-06 X 73960933 73960933 G A KIAA2022 Silent p.N1153N 0.90 TCGA-D3-A8GK-06 X 76907608 76907608 C T ATRX Missense_Mutation p.R1518K 0.88 probably_damaging(0.989) TCGA-D3-A8GK-06 Y 3447865 3447865 A G TGIF2LY 3'UTR 1.00 TCGA-D3-A8GL-06 10 101595936 101595936 C T ABCC2 Missense_Mutation p.S1168L 0.42 tolerated(0.47) benign(0.35) TCGA-D3-A8GL-06 10 102114298 102114298 C T SCD Missense_Mutation p.L186F 0.46 tolerated(0.12) probably_damaging(0.99) TCGA-D3-A8GL-06 10 102249768 102249768 G A SEC31B Missense_Mutation p.P988S 0.39 tolerated(0.17) benign(0.006) TCGA-D3-A8GL-06 10 102685862 102685862 C T FAM178A Intron 0.51 TCGA-D3-A8GL-06 10 102739996 102739996 G A SEMA4G Missense_Mutation p.G416R 0.50 tolerated(0.75) probably_damaging(0.929) TCGA-D3-A8GL-06 10 103825959 103825959 C T HPS6 Missense_Mutation p.P243L 0.37 tolerated(0.12) possibly_damaging(0.65) TCGA-D3-A8GL-06 10 103901199 103901199 C T PPRC1 Silent p.T978T 0.42 TCGA-D3-A8GL-06 10 105046857 105046857 G A INA Silent p.R377R 0.39 TCGA-D3-A8GL-06 10 105361876 105361876 G A SH3PXD2A Silent p.A1005A 0.52 TCGA-D3-A8GL-06 10 105974178 105974178 C T WDR96 Nonsense_Mutation p.W141* 0.59 TCGA-D3-A8GL-06 10 106163566 106163566 C T CCDC147 Missense_Mutation p.P707S 0.50 tolerated(0.06) probably_damaging(0.96) TCGA-D3-A8GL-06 10 107007009 107007009 C T SORCS3 Missense_Mutation p.P1009S 0.51 tolerated(0.25) benign(0.132) TCGA-D3-A8GL-06 10 111624838 111624838 G A XPNPEP1 3'UTR 0.57 TCGA-D3-A8GL-06 10 115603903 115603903 G A DCLRE1A Missense_Mutation p.L827F 0.42 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GL-06 10 115804131 115804131 C T ADRB1 Silent p.I80I 0.52 TCGA-D3-A8GL-06 10 115904275 115904275 G A C10orf118 Missense_Mutation p.A401V 0.42 tolerated(0.07) benign(0.018) TCGA-D3-A8GL-06 10 118314900 118314900 G A PNLIP Missense_Mutation p.G231E 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 10 122626150 122626150 C T WDR11 Missense_Mutation p.T355I 0.45 tolerated(0.07) possibly_damaging(0.658) TCGA-D3-A8GL-06 10 122626151 122626151 C T WDR11 Silent p.T355T 0.47 TCGA-D3-A8GL-06 10 123842739 123842739 G A TACC2 Missense_Mutation p.G242R 0.48 benign(0.037) TCGA-D3-A8GL-06 10 123844851 123844851 G A TACC2 Missense_Mutation p.E946K 0.45 benign(0.017) TCGA-D3-A8GL-06 10 123844959 123844959 G A TACC2 Missense_Mutation p.E982K 0.44 possibly_damaging(0.73) TCGA-D3-A8GL-06 10 123903146 123903146 C T TACC2 Missense_Mutation p.S1920L 0.43 benign(0.002) TCGA-D3-A8GL-06 10 124390682 124390682 C T DMBT1 Silent p.I1948I 0.48 TCGA-D3-A8GL-06 10 124459191 124459191 G A C10orf120 Missense_Mutation p.S39F 0.49 tolerated(0.11) probably_damaging(0.938) TCGA-D3-A8GL-06 10 124596502 124596502 T C CUZD1 Missense_Mutation p.N221S 0.47 tolerated(0.64) benign(0.008) TCGA-D3-A8GL-06 10 125516860 125516860 C T CPXM2 Missense_Mutation p.D596N 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 10 125558644 125558644 C T CPXM2 Missense_Mutation p.G242E 0.36 deleterious(0.04) benign(0.272) TCGA-D3-A8GL-06 10 126517445 126517445 G A FAM175B Splice_Site p.X193_splice 0.41 TCGA-D3-A8GL-06 10 126631753 126631753 C T ZRANB1 Nonsense_Mutation p.Q231* 0.50 TCGA-D3-A8GL-06 10 128191400 128191400 A G C10orf90 Intron 0.43 TCGA-D3-A8GL-06 10 12858284 12858284 C T CAMK1D Missense_Mutation p.P264S 0.40 deleterious(0.03) benign(0.156) TCGA-D3-A8GL-06 10 129871668 129871668 G A PTPRE Nonsense_Mutation p.W511* 0.51 TCGA-D3-A8GL-06 10 129906890 129906890 G A MKI67 Missense_Mutation p.P1072S 0.44 tolerated(0.11) benign(0.152) TCGA-D3-A8GL-06 10 133761031 133761031 C T PPP2R2D Intron 0.30 TCGA-D3-A8GL-06 10 13380726 13380726 G A SEPHS1 Silent p.I92I 0.41 TCGA-D3-A8GL-06 10 134013911 134013911 C T DPYSL4 Missense_Mutation p.S288L 0.42 tolerated(0.09) benign(0.02) TCGA-D3-A8GL-06 10 135082305 135082305 G A ADAM8 Silent p.V670V 0.48 TCGA-D3-A8GL-06 10 13538788 13538788 C T BEND7 Silent p.R131R 0.45 TCGA-D3-A8GL-06 10 1405932 1405932 G A ADARB2 Missense_Mutation p.S123L 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GL-06 10 15262957 15262957 G A FAM171A1 Missense_Mutation p.S286F 0.40 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A8GL-06 10 15317940 15317940 G A FAM171A1 Missense_Mutation p.S111F 0.53 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 10 15628646 15628646 G A ITGA8 Missense_Mutation p.P770L 0.51 tolerated(0.05) possibly_damaging(0.744) TCGA-D3-A8GL-06 10 15646272 15646272 C T ITGA8 Missense_Mutation p.E685K 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 15646326 15646326 C T ITGA8 Missense_Mutation p.E667K 0.39 tolerated(0.31) possibly_damaging(0.79) TCGA-D3-A8GL-06 10 15720765 15720765 C T ITGA8 Missense_Mutation p.G196S 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 17146544 17146544 C T CUBN Missense_Mutation p.E431K 0.42 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A8GL-06 10 17277175 17277175 C T VIM Missense_Mutation p.S339F 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 17949679 17949679 C T MRC1L1 Missense_Mutation p.S1348F 0.36 benign(0.096) TCGA-D3-A8GL-06 10 18250735 18250735 G A SLC39A12 Missense_Mutation p.E163K 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 10 18254463 18254463 G A SLC39A12 Missense_Mutation p.G199S 0.48 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 10 18254536 18254536 G A SLC39A12 Missense_Mutation p.G223E 0.52 deleterious(0.04) probably_damaging(0.937) TCGA-D3-A8GL-06 10 21074778 21074778 G A NEBL Silent p.I981I 0.41 TCGA-D3-A8GL-06 10 24831670 24831670 G A KIAA1217 Missense_Mutation p.E1195K 0.47 tolerated(0.06) benign(0.423) TCGA-D3-A8GL-06 10 24884078 24884078 G A ARHGAP21 Missense_Mutation p.P1252S 0.41 tolerated(0.42) possibly_damaging(0.453) TCGA-D3-A8GL-06 10 25288349 25288349 C T ENKUR Silent p.K68K 0.35 TCGA-D3-A8GL-06 10 25887683 25887683 C T GPR158 Missense_Mutation p.S1043F 0.44 tolerated(0.08) benign(0.021) TCGA-D3-A8GL-06 10 26432395 26432395 G A MYO3A Missense_Mutation p.D761N 0.36 deleterious(0.04) benign(0.008) TCGA-D3-A8GL-06 10 26455059 26455059 C T MYO3A Silent p.T1021T 0.45 TCGA-D3-A8GL-06 10 28223994 28223994 G A ARMC4 Missense_Mutation p.L814F 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 28409158 28409158 C T MPP7 Silent p.R284R 0.49 TCGA-D3-A8GL-06 10 28438982 28438982 C T MPP7 Missense_Mutation p.E55K 0.31 tolerated(0.06) possibly_damaging(0.846) TCGA-D3-A8GL-06 10 37425584 37425584 C T ANKRD30A Nonsense_Mutation p.Q213* 0.39 TCGA-D3-A8GL-06 10 37430980 37430980 G A ANKRD30A Nonsense_Mutation p.W329* 0.41 TCGA-D3-A8GL-06 10 37441039 37441039 G A ANKRD30A Nonsense_Mutation p.W510* 0.45 TCGA-D3-A8GL-06 10 37451751 37451751 G A ANKRD30A Silent p.L603L 0.44 TCGA-D3-A8GL-06 10 37455593 37455593 G A ANKRD30A Missense_Mutation p.E653K 0.29 tolerated(0.4) possibly_damaging(0.636) TCGA-D3-A8GL-06 10 37508573 37508573 A T ANKRD30A Missense_Mutation p.K1255N 0.44 deleterious(0.02) benign(0.094) TCGA-D3-A8GL-06 10 48370899 48370899 G A ZNF488 Missense_Mutation p.D123N 0.57 tolerated(0.36) benign(0.053) TCGA-D3-A8GL-06 10 48371135 48371135 C T ZNF488 Silent p.L201L 0.42 TCGA-D3-A8GL-06 10 48389782 48389782 C T RBP3 Missense_Mutation p.E366K 0.34 tolerated(0.13) possibly_damaging(0.599) TCGA-D3-A8GL-06 10 49379133 49379133 G A FRMPD2 Silent p.L1114L 0.82 TCGA-D3-A8GL-06 10 49395246 49395246 C T FRMPD2 Missense_Mutation p.S752N 0.38 tolerated(0.4) benign(0.002) TCGA-D3-A8GL-06 10 49440321 49440321 C T FRMPD2 Silent p.G335G 0.37 TCGA-D3-A8GL-06 10 50121323 50121323 C T LRRC18 Intron 0.43 TCGA-D3-A8GL-06 10 50227805 50227805 C T VSTM4 Missense_Mutation p.E285K 0.57 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 10 50285334 50285334 C T VSTM4 Silent p.G188G 0.20 TCGA-D3-A8GL-06 10 50530701 50530701 C T C10orf71 Silent p.F37F 0.60 TCGA-D3-A8GL-06 10 50530961 50530961 G A C10orf71 Missense_Mutation p.R124K 0.58 tolerated(0.47) possibly_damaging(0.676) TCGA-D3-A8GL-06 10 50531340 50531340 C T C10orf71 Silent p.F250F 0.41 TCGA-D3-A8GL-06 10 50723459 50723459 G A ERCC6-PGBD3 Missense_Mutation p.H1036Y 0.45 tolerated_low_confidence(0.05) unknown(0) TCGA-D3-A8GL-06 10 50944556 50944556 G A OGDHL Silent p.F867F 0.43 TCGA-D3-A8GL-06 10 52066984 52066984 C T SGMS1 Missense_Mutation p.R387Q 0.44 tolerated(0.37) benign(0.154) TCGA-D3-A8GL-06 10 52071137 52071137 C T SGMS1 Missense_Mutation p.M260I 0.56 tolerated(0.06) benign(0.016) TCGA-D3-A8GL-06 10 5254618 5254618 G A AKR1C4 Missense_Mutation p.D204N 0.39 tolerated(0.26) benign(0.095) TCGA-D3-A8GL-06 10 52573778 52573778 G A A1CF Silent p.L396L 0.52 TCGA-D3-A8GL-06 10 55581939 55581939 C T PCDH15 Silent p.T1851T 0.43 TCGA-D3-A8GL-06 10 55582049 55582049 G A PCDH15 Missense_Mutation p.P1815S 0.37 tolerated_low_confidence(0.74) unknown(0) TCGA-D3-A8GL-06 10 55582052 55582052 G A PCDH15 Missense_Mutation p.P1814S 0.56 tolerated_low_confidence(0.81) unknown(0) TCGA-D3-A8GL-06 10 55582169 55582169 G A PCDH15 Missense_Mutation p.P1775S 0.40 tolerated_low_confidence(0.07) unknown(0) TCGA-D3-A8GL-06 10 56106213 56106213 C T PCDH15 Missense_Mutation p.G169E 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 10 5945006 5945006 C T FBXO18 Missense_Mutation p.L60F 0.48 deleterious(0.04) benign(0.107) TCGA-D3-A8GL-06 10 61828634 61828634 C T ANK3 Missense_Mutation p.G4002E 0.54 probably_damaging(0.998) TCGA-D3-A8GL-06 10 61831846 61831846 C T ANK3 Silent p.R2931R 0.54 TCGA-D3-A8GL-06 10 61832133 61832133 G A ANK3 Missense_Mutation p.H2836Y 0.52 benign(0.027) TCGA-D3-A8GL-06 10 61832853 61832853 G A ANK3 Missense_Mutation p.R2596C 0.44 probably_damaging(0.985) TCGA-D3-A8GL-06 10 6470160 6470160 G A PRKCQ 3'UTR 0.46 TCGA-D3-A8GL-06 10 68687311 68687311 G A LRRTM3 Missense_Mutation p.E213K 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 70641841 70641841 G A STOX1 Silent p.L146L 0.32 TCGA-D3-A8GL-06 10 70644321 70644321 G A STOX1 Missense_Mutation p.E257K 0.45 tolerated(0.12) benign(0.231) TCGA-D3-A8GL-06 10 70645182 70645182 G A STOX1 Missense_Mutation p.D544N 0.43 tolerated(0.32) benign(0.004) TCGA-D3-A8GL-06 10 70776175 70776175 C T KIAA1279 3'UTR 0.53 TCGA-D3-A8GL-06 10 70915604 70915604 G A VPS26A Missense_Mutation p.E64K 0.45 deleterious(0.03) benign(0.222) TCGA-D3-A8GL-06 10 71176166 71176166 G A TACR2 5'UTR 0.44 TCGA-D3-A8GL-06 10 72500900 72500900 C T ADAMTS14 Missense_Mutation p.P639S 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 10 72541681 72541681 C T TBATA Silent p.R51R 0.37 TCGA-D3-A8GL-06 10 72541682 72541682 C T TBATA Missense_Mutation p.R51Q 0.37 tolerated(0.56) benign(0.003) TCGA-D3-A8GL-06 10 73122359 73122359 C T SLC29A3 Silent p.L474L 0.40 TCGA-D3-A8GL-06 10 7318900 7318900 G A SFMBT2 Missense_Mutation p.S275F 0.39 tolerated(0.15) probably_damaging(0.938) TCGA-D3-A8GL-06 10 73455283 73455283 G A CDH23 Splice_Site p.X391_splice 0.43 TCGA-D3-A8GL-06 10 73572526 73572526 G A CDH23 Missense_Mutation p.G931E 0.44 deleterious_low_confidence(0) benign(0.137) TCGA-D3-A8GL-06 10 74684367 74684367 C T OIT3 Silent p.I444I 0.40 TCGA-D3-A8GL-06 10 74899246 74899246 C T ECD Silent p.Q447Q 0.46 TCGA-D3-A8GL-06 10 75567375 75567375 G A NDST2 Missense_Mutation p.R258C 0.39 deleterious(0.05) possibly_damaging(0.806) TCGA-D3-A8GL-06 10 7628002 7628002 C T ITIH5 Missense_Mutation p.D324N 0.48 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 10 76781002 76781002 A T KAT6B Missense_Mutation p.N994Y 0.54 benign(0.017) TCGA-D3-A8GL-06 10 76784998 76784998 C T KAT6B Missense_Mutation p.P1219S 0.42 benign(0.011) TCGA-D3-A8GL-06 10 79760825 79760825 A C POLR3A Missense_Mutation p.I796S 0.39 deleterious(0) probably_damaging(0.909) TCGA-D3-A8GL-06 10 81064968 81064968 C T ZMIZ1 Silent p.T778T 0.44 TCGA-D3-A8GL-06 10 82180170 82180170 C T FAM213A 5'UTR 0.34 TCGA-D3-A8GL-06 10 86131261 86131261 A T CCSER2 Missense_Mutation p.K151N 0.41 deleterious(0) possibly_damaging(0.705) TCGA-D3-A8GL-06 10 87362172 87362172 G A GRID1 Missense_Mutation p.S963F 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-D3-A8GL-06 10 87484278 87484278 G A GRID1 Silent p.F563F 0.46 TCGA-D3-A8GL-06 10 87615879 87615879 G A GRID1 Silent p.D340D 0.42 TCGA-D3-A8GL-06 10 88768559 88768559 C T RP11-96C23.10 3'Flank 0.39 TCGA-D3-A8GL-06 10 88769112 88769112 G A RP11-96C23.10 3'Flank 0.42 TCGA-D3-A8GL-06 10 95353681 95353681 G A RBP4 Missense_Mutation p.S156F 0.36 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GL-06 10 96484190 96484190 C T CYP2C18 Missense_Mutation p.A350V 0.57 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 10 96609693 96609693 C T CYP2C19 Missense_Mutation p.S390F 0.36 tolerated(0.4) possibly_damaging(0.86) TCGA-D3-A8GL-06 10 96745809 96745809 C T CYP2C9 Missense_Mutation p.S390F 0.48 tolerated(0.39) possibly_damaging(0.895) TCGA-D3-A8GL-06 10 96745810 96745810 C T CYP2C9 Silent p.S390S 0.49 TCGA-D3-A8GL-06 10 97602178 97602178 G A ENTPD1 Missense_Mutation p.E126K 0.49 tolerated(0.64) benign(0.002) TCGA-D3-A8GL-06 10 98127765 98127765 G A TLL2 3'UTR 0.48 TCGA-D3-A8GL-06 10 98741650 98741650 C T C10orf12 Missense_Mutation p.P168L 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 11 100141892 100141892 G A CNTN5 Missense_Mutation p.E745K 0.61 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 11 100141923 100141923 G A CNTN5 Missense_Mutation p.G755E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 11 100169975 100169975 G C CNTN5 Missense_Mutation p.E823Q 0.41 tolerated(1) probably_damaging(1) TCGA-D3-A8GL-06 11 1025256 1025256 G A MUC6 Missense_Mutation p.P971S 0.34 unknown(0) TCGA-D3-A8GL-06 11 1029350 1029350 G A MUC6 Missense_Mutation p.R385C 0.50 unknown(0) TCGA-D3-A8GL-06 11 1029351 1029351 G A MUC6 Silent p.G384G 0.50 TCGA-D3-A8GL-06 11 104905030 104905030 G A CASP1 Missense_Mutation p.S60F 0.44 tolerated(0.25) possibly_damaging(0.614) TCGA-D3-A8GL-06 11 105795251 105795251 G A GRIA4 Missense_Mutation p.G535R 0.43 deleterious(0) possibly_damaging(0.594) TCGA-D3-A8GL-06 11 105842747 105842747 G A GRIA4 Missense_Mutation p.G801R 0.46 tolerated(0.11) possibly_damaging(0.726) TCGA-D3-A8GL-06 11 106617320 106617320 A T GUCY1A2 Missense_Mutation p.V629D 0.29 tolerated_low_confidence(0.1) benign(0.005) TCGA-D3-A8GL-06 11 106680953 106680953 C T GUCY1A2 Silent p.E486E 0.40 TCGA-D3-A8GL-06 11 107663520 107663520 C T SLC35F2 Missense_Mutation p.G316R 0.55 tolerated(0.15) benign(0.392) TCGA-D3-A8GL-06 11 107675477 107675477 C T SLC35F2 Missense_Mutation p.D251N 0.49 tolerated(0.11) benign(0.005) TCGA-D3-A8GL-06 11 1086425 1086425 C T MUC2 Missense_Mutation p.S1045F 0.50 probably_damaging(0.982) TCGA-D3-A8GL-06 11 111835392 111835392 C T DIXDC1 Silent p.I60I 0.25 TCGA-D3-A8GL-06 11 112070456 112070456 G A BCO2 Silent p.E257E 0.35 TCGA-D3-A8GL-06 11 113266872 113266872 G A ANKK1 Missense_Mutation p.E256K 0.42 deleterious(0.03) benign(0.221) TCGA-D3-A8GL-06 11 114183101 114183101 G A NNMT Missense_Mutation p.E233K 0.36 tolerated(0.52) benign(0.009) TCGA-D3-A8GL-06 11 114393085 114393085 C T NXPE1 Missense_Mutation p.D275N 0.48 tolerated(0.56) benign(0.002) TCGA-D3-A8GL-06 11 114453479 114453479 G A NXPE4 Silent p.L121L 0.52 TCGA-D3-A8GL-06 11 116633739 116633739 G A BUD13 Missense_Mutation p.P189L 0.34 tolerated(0.06) benign(0.102) TCGA-D3-A8GL-06 11 117869881 117869881 C T IL10RA Missense_Mutation p.A421V 0.50 deleterious(0.04) benign(0.099) TCGA-D3-A8GL-06 11 118220593 118220593 G A CD3G Nonsense_Mutation p.W72* 0.37 TCGA-D3-A8GL-06 11 121444982 121444982 C T SORL1 Missense_Mutation p.R1124C 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GL-06 11 121491883 121491883 G A SORL1 Silent p.G2000G 0.40 TCGA-D3-A8GL-06 11 121498379 121498379 G A SORL1 Silent p.T2160T 0.48 TCGA-D3-A8GL-06 11 12315441 12315441 G A MICALCL Missense_Mutation p.E155K 0.46 tolerated(0.28) benign(0.101) TCGA-D3-A8GL-06 11 12315835 12315835 C T MICALCL Missense_Mutation p.S286F 0.37 tolerated(0.12) benign(0.438) TCGA-D3-A8GL-06 11 12315836 12315836 C T MICALCL Silent p.S286S 0.35 TCGA-D3-A8GL-06 11 123777638 123777638 C T OR8D4 Missense_Mutation p.S167F 0.48 tolerated(0.26) possibly_damaging(0.663) TCGA-D3-A8GL-06 11 124135386 124135386 C T OR8G5 Missense_Mutation p.L222F 0.43 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 11 124412622 124412622 G A OR8B12 Missense_Mutation p.S310F 0.45 deleterious_low_confidence(0) benign(0.078) TCGA-D3-A8GL-06 11 125887246 125887246 A T CDON Missense_Mutation p.I222N 0.29 deleterious(0.02) probably_damaging(0.966) TCGA-D3-A8GL-06 11 126081627 126081627 G A FAM118B 5'UTR 0.41 TCGA-D3-A8GL-06 11 1267932 1267932 C A MUC5B Silent p.V3274V 0.31 TCGA-D3-A8GL-06 11 129827800 129827800 G A PRDM10 Silent p.H25H 0.37 TCGA-D3-A8GL-06 11 133790300 133790300 G A IGSF9B Missense_Mutation p.S1107L 0.55 deleterious_low_confidence(0.05) benign(0.006) TCGA-D3-A8GL-06 11 133790758 133790758 C T IGSF9B Silent p.R954R 0.57 TCGA-D3-A8GL-06 11 134179626 134179626 C T GLB1L3 Silent p.F356F 0.39 TCGA-D3-A8GL-06 11 134254006 134254006 G A B3GAT1 Silent p.I63I 0.40 TCGA-D3-A8GL-06 11 18194850 18194850 A G MRGPRX4 Missense_Mutation p.N16S 0.45 deleterious(0.04) benign(0.285) TCGA-D3-A8GL-06 11 18731159 18731159 C T IGSF22 Missense_Mutation p.E925K 0.54 tolerated(0.55) benign(0.024) TCGA-D3-A8GL-06 11 18956219 18956219 G A MRGPRX1 Missense_Mutation p.S38F 0.31 deleterious(0.03) benign(0.046) TCGA-D3-A8GL-06 11 1972217 1972217 C T MRPL23 Missense_Mutation p.P36S 0.60 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 11 1972219 1972219 C T MRPL23 Silent p.P36P 0.58 TCGA-D3-A8GL-06 11 26463544 26463544 G A ANO3 Silent p.Q42Q 0.49 TCGA-D3-A8GL-06 11 26669280 26669280 G A ANO3 Missense_Mutation p.G818E 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 11 26743205 26743205 G A SLC5A12 Silent p.F19F 0.43 TCGA-D3-A8GL-06 11 27016451 27016451 C T FIBIN Silent p.I126I 0.31 TCGA-D3-A8GL-06 11 33370117 33370117 C T HIPK3 Missense_Mutation p.P807S 0.52 tolerated(0.19) probably_damaging(0.999) TCGA-D3-A8GL-06 11 33772151 33772151 G A FBXO3 Missense_Mutation p.S289F 0.42 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 11 35457471 35457471 C T PAMR1 Missense_Mutation p.R455Q 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GL-06 11 3660123 3660123 C T ART5 Intron 0.42 TCGA-D3-A8GL-06 11 40136842 40136842 G A LRRC4C Missense_Mutation p.P334L 0.44 tolerated(0.32) benign(0.001) TCGA-D3-A8GL-06 11 40137705 40137705 G A LRRC4C Silent p.T46T 0.55 TCGA-D3-A8GL-06 11 43283978 43283978 C T HNRNPKP3 RNA 0.38 TCGA-D3-A8GL-06 11 4389181 4389181 C T OR52B4 Silent p.G115G 0.33 TCGA-D3-A8GL-06 11 4389469 4389469 G A OR52B4 Silent p.I19I 0.37 TCGA-D3-A8GL-06 11 45671733 45671733 G A CHST1 Silent p.F247F 0.45 TCGA-D3-A8GL-06 11 45924519 45924519 G A MAPK8IP1 Missense_Mutation p.G401R 0.52 tolerated(0.44) benign(0.008) TCGA-D3-A8GL-06 11 4661859 4661859 C T OR51D1 Missense_Mutation p.P280L 0.43 tolerated(0.26) benign(0.034) TCGA-D3-A8GL-06 11 46747427 46747427 T A F2 Missense_Mutation p.V193E 0.42 tolerated(0.15) benign(0.015) TCGA-D3-A8GL-06 11 47306508 47306508 C G MADD Missense_Mutation p.T725R 0.46 tolerated_low_confidence(0.13) benign(0.001) TCGA-D3-A8GL-06 11 47819437 47819437 C T NUP160 Splice_Site p.X1062_splice 0.45 TCGA-D3-A8GL-06 11 4824867 4824867 G A OR52R1 Silent p.I248I 0.48 TCGA-D3-A8GL-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.36 TCGA-D3-A8GL-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.23 TCGA-D3-A8GL-06 11 48346829 48346829 G A OR4C3 Missense_Mutation p.E113K 0.27 tolerated(0.09) benign(0.011) TCGA-D3-A8GL-06 11 4843212 4843212 C T OR51F2 Silent p.I199I 0.40 TCGA-D3-A8GL-06 11 4903793 4903793 C T OR51T1 Silent p.L249L 0.46 TCGA-D3-A8GL-06 11 4936552 4936552 G A OR51G2 Silent p.F114F 0.61 TCGA-D3-A8GL-06 11 49598231 49598231 G A RP11-707M1.1 RNA 0.35 TCGA-D3-A8GL-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.42 TCGA-D3-A8GL-06 11 51412038 51412038 G A OR4A5 Missense_Mutation p.R120C 0.35 deleterious_low_confidence(0.03) benign(0.035) TCGA-D3-A8GL-06 11 5289780 5289780 C T HBE1 Silent p.K121K 0.45 TCGA-D3-A8GL-06 11 5344541 5344541 C T OR51B2 3'UTR 0.32 TCGA-D3-A8GL-06 11 5444196 5444196 C T OR51Q1 Missense_Mutation p.P256S 0.45 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 11 5461962 5461962 G A OR51I1 Silent p.S261S 0.41 TCGA-D3-A8GL-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.45 deleterious_low_confidence(0) benign(0.072) TCGA-D3-A8GL-06 11 55322412 55322412 G A OR4C15 Missense_Mutation p.M210I 0.40 tolerated_low_confidence(1) benign(0.011) TCGA-D3-A8GL-06 11 55322559 55322559 C T OR4C15 Silent p.I259I 0.38 TCGA-D3-A8GL-06 11 55371553 55371553 G A OR4C11 Silent p.V99V 0.46 TCGA-D3-A8GL-06 11 55418382 55418382 G A OR4S2 Translation_Start_Site p.M1? 0.41 deleterious(0) benign(0.002) TCGA-D3-A8GL-06 11 55541648 55541648 C T OR5D13 Silent p.S245S 0.44 TCGA-D3-A8GL-06 11 55563546 55563546 G A OR5D14 Missense_Mutation p.G172E 0.44 tolerated(0.14) benign(0.124) TCGA-D3-A8GL-06 11 55595330 55595330 G A OR5L2 Missense_Mutation p.M212I 0.43 tolerated(0.29) benign(0.001) TCGA-D3-A8GL-06 11 5566733 5566733 C T OR52H1 Missense_Mutation p.M7I 0.37 deleterious(0.04) benign(0.049) TCGA-D3-A8GL-06 11 55798846 55798846 C T OR5AS1 Missense_Mutation p.R318C 0.46 deleterious(0) benign(0.002) TCGA-D3-A8GL-06 11 56000458 56000458 G A OR5T2 Silent p.F68F 0.44 TCGA-D3-A8GL-06 11 562279 562279 C T RASSF7 Missense_Mutation p.R109C 0.40 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GL-06 11 56230138 56230138 G A OR5M9 Missense_Mutation p.S247F 0.42 deleterious(0) benign(0.17) TCGA-D3-A8GL-06 11 56756846 56756846 C T OR5AK2 Missense_Mutation p.S153L 0.39 tolerated(0.36) benign(0.02) TCGA-D3-A8GL-06 11 56949356 56949356 C T LRRC55 5'UTR 0.42 TCGA-D3-A8GL-06 11 56949357 56949357 C T LRRC55 5'UTR 0.40 TCGA-D3-A8GL-06 11 56949644 56949644 G A LRRC55 Missense_Mutation p.D93N 0.31 tolerated(0.11) probably_damaging(0.993) TCGA-D3-A8GL-06 11 5776238 5776238 C T OR52N4 Missense_Mutation p.H90Y 0.55 deleterious(0.01) benign(0.003) TCGA-D3-A8GL-06 11 5776340 5776340 C T OR52N4 Missense_Mutation p.R124C 0.45 deleterious(0.01) benign(0.082) TCGA-D3-A8GL-06 11 5776574 5776574 C T OR52N4 Silent p.L202L 0.43 TCGA-D3-A8GL-06 11 57958647 57958647 C T OR9Q2 Missense_Mutation p.H229Y 0.43 deleterious(0.01) benign(0.217) TCGA-D3-A8GL-06 11 57982376 57982376 G A OR1S1 Missense_Mutation p.G54R 0.47 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GL-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GL-06 11 58170684 58170684 C T OR5B3 Missense_Mutation p.V67M 0.47 deleterious_low_confidence(0.03) benign(0.153) TCGA-D3-A8GL-06 11 58170771 58170771 C T OR5B3 Missense_Mutation p.V38I 0.47 tolerated_low_confidence(0.33) benign(0.005) TCGA-D3-A8GL-06 11 58170772 58170772 C T OR5B3 Silent p.L37L 0.47 TCGA-D3-A8GL-06 11 58480274 58480274 G A GLYAT Missense_Mutation p.S92L 0.38 tolerated(0.43) benign(0.02) TCGA-D3-A8GL-06 11 58723415 58723415 G A GLYATL1 Missense_Mutation p.R306K 0.46 tolerated(1) benign(0.008) TCGA-D3-A8GL-06 11 59224794 59224794 G A OR4D6 Missense_Mutation p.D121N 0.40 deleterious(0.01) possibly_damaging(0.84) TCGA-D3-A8GL-06 11 59283314 59283314 G A OR4D9 Missense_Mutation p.R310K 0.45 tolerated(0.77) benign(0.003) TCGA-D3-A8GL-06 11 6023533 6023533 C T OR56A4 Silent p.R282R 0.30 TCGA-D3-A8GL-06 11 60274627 60274627 C T MS4A12 3'UTR 0.66 TCGA-D3-A8GL-06 11 60557857 60557857 C T MS4A10 Missense_Mutation p.P17S 0.43 tolerated(0.17) benign(0.014) TCGA-D3-A8GL-06 11 60704046 60704046 C T TMEM132A Silent p.S914S 0.48 TCGA-D3-A8GL-06 11 61026285 61026285 C T VWCE Silent p.K910K 0.40 TCGA-D3-A8GL-06 11 61050353 61050353 G A VWCE Missense_Mutation p.P189L 0.44 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GL-06 11 6129055 6129055 C T OR56B4 Missense_Mutation p.S16F 0.39 deleterious(0.01) benign(0.043) TCGA-D3-A8GL-06 11 61630527 61630527 C T FADS2 Silent p.F322F 0.39 TCGA-D3-A8GL-06 11 61917629 61917629 C T INCENP Missense_Mutation p.S831F 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 11 619768 619768 C T CDHR5 Silent p.A364A 0.32 TCGA-D3-A8GL-06 11 61981334 61981334 C T SCGB2A1 3'UTR 0.42 TCGA-D3-A8GL-06 11 62284590 62284590 T C AHNAK Missense_Mutation p.K5767E 0.36 possibly_damaging(0.904) TCGA-D3-A8GL-06 11 62286332 62286332 G A AHNAK Missense_Mutation p.S5186F 0.53 probably_damaging(0.994) TCGA-D3-A8GL-06 11 62394049 62394049 G A GANAB Silent p.S857S 0.38 TCGA-D3-A8GL-06 11 6244460 6244460 G A FAM160A2 Silent p.A262A 0.44 TCGA-D3-A8GL-06 11 62653010 62653010 C T SLC3A2 Missense_Mutation p.T460I 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 11 63326077 63326077 G A HRASLS2 Silent p.A58A 0.43 TCGA-D3-A8GL-06 11 64517931 64517931 C T PYGM Silent p.V698V 0.35 TCGA-D3-A8GL-06 11 64568580 64568580 C T MAP4K2 Intron 0.45 TCGA-D3-A8GL-06 11 65123630 65123630 C T TIGD3 Silent p.F117F 0.63 TCGA-D3-A8GL-06 11 65715549 65715549 G A TSGA10IP RNA 0.45 TCGA-D3-A8GL-06 11 65734851 65734851 C T SART1 Missense_Mutation p.S437F 0.43 deleterious(0) possibly_damaging(0.801) TCGA-D3-A8GL-06 11 65810878 65810878 G A GAL3ST3 Silent p.F132F 0.25 TCGA-D3-A8GL-06 11 66191919 66191919 C T NPAS4 Missense_Mutation p.P520S 0.45 tolerated_low_confidence(0.73) benign(0.007) TCGA-D3-A8GL-06 11 6621335 6621335 G A RRP8 3'UTR 0.36 TCGA-D3-A8GL-06 11 66394143 66394143 C T RBM14 3'UTR 0.50 TCGA-D3-A8GL-06 11 66468422 66468422 G A SPTBN2 Missense_Mutation p.L1050F 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 11 67410089 67410089 G A ACY3 3'UTR 0.44 TCGA-D3-A8GL-06 11 67412314 67412314 C T ACY3 Missense_Mutation p.E221K 0.20 deleterious(0.02) benign(0.046) TCGA-D3-A8GL-06 11 67559727 67559727 G T FAM86C2P RNA 0.33 TCGA-D3-A8GL-06 11 67815391 67815391 C T TCIRG1 Silent p.P502P 0.40 TCGA-D3-A8GL-06 11 6789510 6789510 G A OR2AG2 Missense_Mutation p.R227C 0.43 deleterious(0.02) possibly_damaging(0.67) TCGA-D3-A8GL-06 11 6817018 6817018 C T OR6A2 5'UTR 0.54 TCGA-D3-A8GL-06 11 68527104 68527104 G A CPT1A Missense_Mutation p.S723L 0.39 deleterious(0) possibly_damaging(0.817) TCGA-D3-A8GL-06 11 6913246 6913246 G A OR2D2 Silent p.F162F 0.47 TCGA-D3-A8GL-06 11 7022383 7022383 G A ZNF214 Silent p.S177S 0.48 TCGA-D3-A8GL-06 11 70332347 70332347 C T SHANK2 Missense_Mutation p.G1352S 0.58 tolerated(0.42) benign(0) TCGA-D3-A8GL-06 11 7111420 7111420 G A RBMXL2 Missense_Mutation p.G357S 0.58 tolerated(0.31) unknown(0) TCGA-D3-A8GL-06 11 71150003 71150003 G A DHCR7 Silent p.I251I 0.29 TCGA-D3-A8GL-06 11 72145245 72145245 G A CLPB Missense_Mutation p.P92S 0.35 tolerated_low_confidence(0.18) benign(0.008) TCGA-D3-A8GL-06 11 72408402 72408402 G A ARAP1 Silent p.I973I 0.62 TCGA-D3-A8GL-06 11 72945705 72945705 C T P2RY2 Silent p.P167P 0.33 TCGA-D3-A8GL-06 11 73066975 73066975 C T ARHGEF17 Missense_Mutation p.P1214S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 11 73076728 73076728 G A ARHGEF17 Missense_Mutation p.D1911N 0.44 deleterious(0.03) possibly_damaging(0.889) TCGA-D3-A8GL-06 11 7324318 7324318 C T SYT9 Missense_Mutation p.A65V 0.40 tolerated(0.64) benign(0.288) TCGA-D3-A8GL-06 11 7324437 7324437 G A SYT9 Missense_Mutation p.E105K 0.50 tolerated(0.29) benign(0.11) TCGA-D3-A8GL-06 11 73814520 73814520 G A C2CD3 Missense_Mutation p.P746S 0.50 tolerated(0.07) benign(0.121) TCGA-D3-A8GL-06 11 74914374 74914374 C T SLCO2B1 Silent p.I617I 0.43 TCGA-D3-A8GL-06 11 76175008 76175008 C A C11orf30 Missense_Mutation p.P239T 0.44 tolerated(0.21) possibly_damaging(0.901) TCGA-D3-A8GL-06 11 76910700 76910700 G A MYO7A Silent p.A1563A 0.43 TCGA-D3-A8GL-06 11 7981710 7981710 G A NLRP10 Silent p.D483D 0.46 TCGA-D3-A8GL-06 11 802201 802201 G A PIDD Silent p.F390F 0.55 TCGA-D3-A8GL-06 11 84245714 84245714 C T DLG2 Missense_Mutation p.E140K 0.39 tolerated_low_confidence(0.21) benign(0.167) TCGA-D3-A8GL-06 11 8486341 8486341 C T STK33 Missense_Mutation p.G123E 0.64 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GL-06 11 85396441 85396441 C T CCDC89 Missense_Mutation p.E245K 0.48 tolerated(0.57) benign(0.124) TCGA-D3-A8GL-06 11 88781023 88781023 G A GRM5 Silent p.I6I 0.38 TCGA-D3-A8GL-06 11 89774444 89774444 G A TRIM49C Missense_Mutation p.R362Q 0.47 tolerated(0.11) benign(0.017) TCGA-D3-A8GL-06 11 92086422 92086422 G A FAT3 Missense_Mutation p.D382N 0.52 benign(0.002) TCGA-D3-A8GL-06 11 92088162 92088162 G A FAT3 Missense_Mutation p.D962N 0.42 probably_damaging(1) TCGA-D3-A8GL-06 11 9225496 9225496 C A DENND5A Silent p.R220R 0.59 TCGA-D3-A8GL-06 11 94039762 94039762 C T FOLR4 Silent p.F74F 0.38 TCGA-D3-A8GL-06 11 94328504 94328504 C T PIWIL4 Nonsense_Mutation p.Q394* 0.57 TCGA-D3-A8GL-06 12 101510497 101510497 C T ANO4 Nonsense_Mutation p.R796* 0.88 TCGA-D3-A8GL-06 12 101560291 101560291 G A SLC5A8 Nonsense_Mutation p.Q503* 0.93 TCGA-D3-A8GL-06 12 1017918 1017918 C T WNK1 Missense_Mutation p.S2370F 0.56 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 12 10275937 10275937 G A CLEC7A Missense_Mutation p.S173F 0.30 deleterious(0.04) possibly_damaging(0.901) TCGA-D3-A8GL-06 12 104396919 104396919 C T GLT8D2 Missense_Mutation p.R93Q 0.83 tolerated(0.12) benign(0.271) TCGA-D3-A8GL-06 12 106734776 106734776 G A TCP11L2 Missense_Mutation p.D439N 0.85 tolerated(0.08) benign(0.053) TCGA-D3-A8GL-06 12 106734777 106734777 G A TCP11L2 Splice_Site p.X439_splice 0.87 TCGA-D3-A8GL-06 12 10782214 10782214 G A STYK1 Silent p.L171L 0.59 TCGA-D3-A8GL-06 12 108011150 108011150 G A BTBD11 Missense_Mutation p.G723E 0.86 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 12 108600114 108600114 G A WSCD2 Missense_Mutation p.R144Q 0.87 tolerated(0.26) probably_damaging(0.936) TCGA-D3-A8GL-06 12 108634282 108634282 C T WSCD2 Missense_Mutation p.H436Y 0.83 deleterious(0) possibly_damaging(0.655) TCGA-D3-A8GL-06 12 112183948 112183948 G A ACAD10 Missense_Mutation p.E737K 0.88 tolerated(0.11) benign(0.013) TCGA-D3-A8GL-06 12 113742148 113742148 G A SLC8B1 Missense_Mutation p.S512F 0.82 tolerated(0.7) benign(0.065) TCGA-D3-A8GL-06 12 11461387 11461387 C T PRB4 Missense_Mutation p.R177Q 0.60 tolerated_low_confidence(0.36) unknown(0) TCGA-D3-A8GL-06 12 11546087 11546087 G A PRB2 Missense_Mutation p.P309S 0.60 deleterious(0.05) unknown(0) TCGA-D3-A8GL-06 12 11546785 11546785 C T PRB2 Missense_Mutation p.G76E 0.46 tolerated(0.56) unknown(0) TCGA-D3-A8GL-06 12 118575861 118575861 C A PEBP1 Silent p.T51T 0.20 TCGA-D3-A8GL-06 12 122701071 122701071 G A DIABLO Missense_Mutation p.L163F 0.92 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 12 12339917 12339917 G A LRP6 Missense_Mutation p.H262Y 0.60 tolerated(0.72) benign(0.228) TCGA-D3-A8GL-06 12 130927206 130927206 C T RIMBP2 Splice_Site p.X214_splice 0.92 TCGA-D3-A8GL-06 12 133363344 133363344 G A GOLGA3 Silent p.V947V 0.86 TCGA-D3-A8GL-06 12 13724823 13724823 G A GRIN2B Missense_Mutation p.R696C 0.61 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 12 13768446 13768446 C T GRIN2B Nonsense_Mutation p.W494* 0.61 TCGA-D3-A8GL-06 12 14765913 14765913 C T GUCY2C 3'UTR 0.62 TCGA-D3-A8GL-06 12 14809501 14809501 G A GUCY2C Missense_Mutation p.P472L 0.62 tolerated(0.07) possibly_damaging(0.459) TCGA-D3-A8GL-06 12 15102782 15102782 G A ARHGDIB Silent p.T73T 0.59 TCGA-D3-A8GL-06 12 18499700 18499700 C T PIK3C2G Missense_Mutation p.P519S 0.33 tolerated(0.48) benign(0.232) TCGA-D3-A8GL-06 12 18699287 18699287 G A PIK3C2G Missense_Mutation p.G1130R 0.44 deleterious(0.04) benign(0.139) TCGA-D3-A8GL-06 12 18849104 18849104 C T PLCZ1 Nonsense_Mutation p.W424* 0.45 TCGA-D3-A8GL-06 12 1967771 1967771 G A CACNA2D4 Silent p.I660I 0.64 TCGA-D3-A8GL-06 12 20790070 20790070 G A PDE3A Missense_Mutation p.D680N 0.28 deleterious(0) benign(0.044) TCGA-D3-A8GL-06 12 21028385 21028385 G A SLCO1B3 Missense_Mutation p.G315E 0.65 tolerated(1) benign(0.006) TCGA-D3-A8GL-06 12 2602463 2602463 G A CACNA1C Missense_Mutation p.G342S 0.65 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GL-06 12 26809234 26809234 G A ITPR2 Missense_Mutation p.H814Y 0.59 tolerated(0.16) benign(0.004) TCGA-D3-A8GL-06 12 28605449 28605449 C T CCDC91 Silent p.V321V 0.29 TCGA-D3-A8GL-06 12 30833573 30833573 C T IPO8 Splice_Site p.X161_splice 0.28 TCGA-D3-A8GL-06 12 33021862 33021862 C T PKP2 Missense_Mutation p.R390K 0.29 tolerated(1) benign(0.004) TCGA-D3-A8GL-06 12 33031140 33031140 G A PKP2 Missense_Mutation p.S225F 0.32 deleterious(0.01) possibly_damaging(0.713) TCGA-D3-A8GL-06 12 40037699 40037699 C T C12orf40 Missense_Mutation p.S61F 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 12 43750297 43750297 C T ADAMTS20 Missense_Mutation p.R1878Q 0.47 tolerated(0.46) benign(0.009) TCGA-D3-A8GL-06 12 44124316 44124316 C T PUS7L Missense_Mutation p.E657K 0.44 tolerated(0.08) benign(0.291) TCGA-D3-A8GL-06 12 45695826 45695826 C T ANO6 Missense_Mutation p.P55S 0.47 tolerated_low_confidence(0.68) benign(0.002) TCGA-D3-A8GL-06 12 46243452 46243452 G A ARID2 Missense_Mutation p.R602K 0.48 deleterious(0.05) probably_damaging(0.986) TCGA-D3-A8GL-06 12 46244881 46244881 C A ARID2 Missense_Mutation p.S992Y 0.50 deleterious_low_confidence(0.01) benign(0.188) TCGA-D3-A8GL-06 12 4705439 4705439 G A DYRK4 Missense_Mutation p.R136K 0.32 deleterious(0.03) benign(0.124) TCGA-D3-A8GL-06 12 48372466 48372466 G A COL2A1 Missense_Mutation p.P937S 0.52 unknown(0) TCGA-D3-A8GL-06 12 48375756 48375756 C T COL2A1 Intron 0.53 TCGA-D3-A8GL-06 12 48866562 48866562 G A ANP32D Missense_Mutation p.D39N 0.39 tolerated(0.07) benign(0.042) TCGA-D3-A8GL-06 12 48921695 48921695 G A OR8S1 Missense_Mutation p.G297R 0.47 deleterious(0) benign(0.065) TCGA-D3-A8GL-06 12 4920515 4920515 G A KCNA6 Silent p.K436K 0.29 TCGA-D3-A8GL-06 12 49723201 49723201 C T TROAP Silent p.S376S 0.48 TCGA-D3-A8GL-06 12 49723202 49723202 C T TROAP Missense_Mutation p.P377S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 12 50369372 50369372 G A AQP6 Missense_Mutation p.G256E 0.56 tolerated(1) benign(0) TCGA-D3-A8GL-06 12 50854978 50854978 C T LARP4 Silent p.S394S 0.42 TCGA-D3-A8GL-06 12 51126176 51126176 C T DIP2B Missense_Mutation p.R1280W 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 12 51319138 51319138 T A METTL7A Missense_Mutation p.F106Y 0.48 tolerated(0.47) benign(0.004) TCGA-D3-A8GL-06 12 51382020 51382020 G A SLC11A2 3'UTR 0.25 TCGA-D3-A8GL-06 12 51510182 51510182 G A TFCP2 Missense_Mutation p.H125Y 0.45 deleterious(0) possibly_damaging(0.824) TCGA-D3-A8GL-06 12 52639373 52639373 G A KRT7 Missense_Mutation p.E388K 0.45 deleterious(0) benign(0.072) TCGA-D3-A8GL-06 12 52774191 52774191 G A KRT84 Silent p.I460I 0.44 TCGA-D3-A8GL-06 12 52822521 52822521 C T KRT75 Missense_Mutation p.E348K 0.36 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GL-06 12 53185564 53185564 C T KRT3 Missense_Mutation p.D409N 0.23 deleterious(0.02) possibly_damaging(0.836) TCGA-D3-A8GL-06 12 53201595 53201595 G A KRT4 Silent p.A393A 0.48 TCGA-D3-A8GL-06 12 53586970 53586970 C T ITGB7 Silent p.E560E 0.40 TCGA-D3-A8GL-06 12 53663802 53663802 C T ESPL1 Missense_Mutation p.A359V 0.56 tolerated(0.25) benign(0.002) TCGA-D3-A8GL-06 12 54339012 54339012 C T HOXC13 Missense_Mutation p.S322L 0.53 tolerated(1) benign(0.041) TCGA-D3-A8GL-06 12 54769709 54769709 G A ZNF385A Silent p.S59S 0.35 TCGA-D3-A8GL-06 12 55420737 55420737 G A NEUROD4 Missense_Mutation p.G172R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 12 55688558 55688558 G A OR6C6 Silent p.I153I 0.46 TCGA-D3-A8GL-06 12 55759157 55759157 G A OR6C75 Missense_Mutation p.R88K 0.47 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GL-06 12 55886278 55886278 G A OR6C68 Silent p.G39G 0.46 TCGA-D3-A8GL-06 12 55886883 55886883 C T OR6C68 Missense_Mutation p.S241L 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GL-06 12 56429256 56429256 C T IKZF4 3'UTR 0.58 TCGA-D3-A8GL-06 12 56625264 56625264 G A SLC39A5 Missense_Mutation p.R69Q 0.51 tolerated(0.17) benign(0.025) TCGA-D3-A8GL-06 12 56740274 56740274 G A STAT2 Missense_Mutation p.P666S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 12 56755178 56755178 G A APOF Missense_Mutation p.P271L 0.56 tolerated(0.07) benign(0.187) TCGA-D3-A8GL-06 12 56822100 56822100 G A TIMELESS Missense_Mutation p.R500C 0.41 tolerated(0.05) benign(0.028) TCGA-D3-A8GL-06 12 57111871 57111871 G A NACA Intron 0.35 TCGA-D3-A8GL-06 12 57112187 57112187 G A NACA Intron 0.47 TCGA-D3-A8GL-06 12 57920088 57920088 C T MBD6 Missense_Mutation p.S446F 0.41 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GL-06 12 58140851 58140851 T C TSPAN31 Silent p.L165L 0.46 TCGA-D3-A8GL-06 12 6031942 6031942 G A ANO2 Silent p.R13R 0.41 TCGA-D3-A8GL-06 12 6161852 6161852 C T VWF Silent p.E681E 0.59 TCGA-D3-A8GL-06 12 62918913 62918913 C T MON2 Missense_Mutation p.R387C 0.47 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GL-06 12 62965237 62965237 A T MON2 Silent p.V1463V 0.48 TCGA-D3-A8GL-06 12 64456861 64456861 C T SRGAP1 Silent p.Y322Y 0.37 TCGA-D3-A8GL-06 12 66707940 66707940 C T HELB Missense_Mutation p.L619F 0.40 deleterious(0.02) probably_damaging(0.923) TCGA-D3-A8GL-06 12 6690906 6690906 C A CHD4 Missense_Mutation p.M1530I 0.54 tolerated(0.15) benign(0) TCGA-D3-A8GL-06 12 68553387 68553387 A T IFNG Nonsense_Mutation p.Y3* 0.42 TCGA-D3-A8GL-06 12 69080743 69080743 G A NUP107 5'UTR 0.44 TCGA-D3-A8GL-06 12 70929928 70929928 G A PTPRB Silent p.F1986F 0.33 TCGA-D3-A8GL-06 12 70931837 70931837 C T PTPRB Intron 0.61 TCGA-D3-A8GL-06 12 72004156 72004156 C T ZFC3H1 3'UTR 0.88 TCGA-D3-A8GL-06 12 7249227 7249227 C T C1RL Silent p.K408K 0.64 TCGA-D3-A8GL-06 12 7280846 7280846 C T RBP5 Missense_Mutation p.R81Q 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 12 7303203 7303203 G A CLSTN3 Missense_Mutation p.G770E 0.35 tolerated(0.11) benign(0.191) TCGA-D3-A8GL-06 12 7457122 7457122 G A ACSM4 Silent p.K65K 0.32 TCGA-D3-A8GL-06 12 7475124 7475124 G A ACSM4 Missense_Mutation p.G371E 0.25 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GL-06 12 7479612 7479612 C T ACSM4 Missense_Mutation p.S526F 0.23 deleterious(0.01) benign(0.048) TCGA-D3-A8GL-06 12 7981451 7981451 C T SLC2A14 Silent p.L198L 0.69 TCGA-D3-A8GL-06 12 8327869 8327869 G A ZNF705A Missense_Mutation p.G62E 0.16 deleterious(0.04) probably_damaging(0.972) TCGA-D3-A8GL-06 12 8376706 8376706 C T FAM90A1 Missense_Mutation p.E77K 0.20 tolerated(1) benign(0.091) TCGA-D3-A8GL-06 12 8610513 8610513 C T CLEC6A Silent p.S17S 0.62 TCGA-D3-A8GL-06 12 8629941 8629941 C T CLEC6A Missense_Mutation p.H171Y 0.32 tolerated(1) benign(0.089) TCGA-D3-A8GL-06 12 8757938 8757938 C T AICDA Silent p.G100G 0.65 TCGA-D3-A8GL-06 12 91363837 91363837 C T EPYC Missense_Mutation p.R261Q 0.94 tolerated(0.31) benign(0.009) TCGA-D3-A8GL-06 12 9162088 9162088 C T KLRG1 Silent p.S175S 0.58 TCGA-D3-A8GL-06 13 103419679 103419679 G A TEX30 Missense_Mutation p.R150C 0.28 tolerated(0.2) possibly_damaging(0.75) TCGA-D3-A8GL-06 13 103459871 103459871 C A BIVM-ERCC5 Missense_Mutation p.T57N 0.56 deleterious_low_confidence(0.05) benign(0.262) TCGA-D3-A8GL-06 13 111119388 111119388 T C COL4A2 Silent p.G680G 0.27 TCGA-D3-A8GL-06 13 111176396 111176396 G A RAB20 Silent p.L107L 0.32 TCGA-D3-A8GL-06 13 111532384 111532384 G A ANKRD10 Missense_Mutation p.S288F 0.29 tolerated(0.08) possibly_damaging(0.553) TCGA-D3-A8GL-06 13 114083357 114083357 C T ADPRHL1 Missense_Mutation p.G186R 0.33 tolerated(0.17) probably_damaging(0.977) TCGA-D3-A8GL-06 13 114535737 114535737 G A GAS6 Intron 0.56 TCGA-D3-A8GL-06 13 20251949 20251949 T A MPHOSPH8 3'Flank 0.19 TCGA-D3-A8GL-06 13 20277457 20277457 G A PSPC1 Missense_Mutation p.S477L 0.25 deleterious(0.02) benign(0.019) TCGA-D3-A8GL-06 13 20325516 20325516 G A PSPC1 Nonsense_Mutation p.Q288* 0.63 TCGA-D3-A8GL-06 13 20763014 20763014 T C GJB2 3'UTR 0.59 TCGA-D3-A8GL-06 13 21205266 21205266 T C IFT88 Intron 0.64 TCGA-D3-A8GL-06 13 23907908 23907908 G A SACS Silent p.V3369V 0.60 TCGA-D3-A8GL-06 13 23909914 23909914 G A SACS Missense_Mutation p.P2701S 0.22 probably_damaging(0.999) TCGA-D3-A8GL-06 13 24304541 24304541 G A MIPEP Silent p.A696A 0.69 TCGA-D3-A8GL-06 13 24892961 24892961 C T C1QTNF9 Missense_Mutation p.P58S 0.31 tolerated(0.2) benign(0.438) TCGA-D3-A8GL-06 13 24895627 24895627 C T C1QTNF9 Silent p.F241F 0.23 TCGA-D3-A8GL-06 13 25060323 25060323 G A PARP4 Silent p.I445I 0.38 TCGA-D3-A8GL-06 13 25671992 25671992 G A PABPC3 Silent p.K552K 0.26 TCGA-D3-A8GL-06 13 27649451 27649451 C T USP12 Missense_Mutation p.R270Q 0.24 deleterious(0.02) possibly_damaging(0.693) TCGA-D3-A8GL-06 13 28542715 28542715 G A CDX2 Silent p.G143G 0.64 TCGA-D3-A8GL-06 13 29599511 29599511 C T MTUS2 Missense_Mutation p.P236S 0.35 deleterious(0.02) benign(0.009) TCGA-D3-A8GL-06 13 33684945 33684945 C T STARD13 Missense_Mutation p.G903R 0.61 tolerated(0.15) benign(0.016) TCGA-D3-A8GL-06 13 35733774 35733774 G A NBEA Missense_Mutation p.E1156K 0.46 tolerated_low_confidence(0.1) benign(0.036) TCGA-D3-A8GL-06 13 37012936 37012936 C T CCNA1 Silent p.F275F 0.62 TCGA-D3-A8GL-06 13 38225466 38225466 C T TRPC4 Nonsense_Mutation p.W672* 0.31 TCGA-D3-A8GL-06 13 39438578 39438578 T C FREM2 Silent p.I2606I 0.68 TCGA-D3-A8GL-06 13 41766531 41766531 G A KBTBD7 Silent p.S621S 0.61 TCGA-D3-A8GL-06 13 42875868 42875868 A G AKAP11 Missense_Mutation p.T996A 0.55 tolerated(0.57) benign(0.012) TCGA-D3-A8GL-06 13 43358273 43358273 C T FAM216B Missense_Mutation p.P24S 0.25 tolerated(0.55) benign(0.007) TCGA-D3-A8GL-06 13 44443539 44443539 C T CCDC122 5'UTR 0.55 TCGA-D3-A8GL-06 13 46287427 46287427 C T SPERT Silent p.S89S 0.26 TCGA-D3-A8GL-06 13 48528347 48528347 G A SUCLA2 Silent p.F345F 0.22 TCGA-D3-A8GL-06 13 48528670 48528670 G A SUCLA2 Silent p.I275I 0.53 TCGA-D3-A8GL-06 13 51519612 51519612 C T RNASEH2B Missense_Mutation p.S187F 0.56 deleterious(0.01) benign(0.314) TCGA-D3-A8GL-06 13 52025122 52025122 G A INTS6 Intron 0.34 TCGA-D3-A8GL-06 13 52952565 52952565 C T THSD1 Missense_Mutation p.E514K 0.63 deleterious(0) possibly_damaging(0.509) TCGA-D3-A8GL-06 13 70275706 70275706 C T KLHL1 3'UTR 0.25 TCGA-D3-A8GL-06 13 75936299 75936299 G A TBC1D4 Missense_Mutation p.R315W 0.67 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GL-06 13 78133998 78133998 G A SCEL Missense_Mutation p.R74K 0.54 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 13 86369033 86369033 C T SLITRK6 Silent p.K537K 0.43 TCGA-D3-A8GL-06 13 93879831 93879831 G A GPC6 Missense_Mutation p.G41E 0.90 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GL-06 13 95278271 95278271 A C GPR180 Missense_Mutation p.I380L 0.62 tolerated(0.69) benign(0.001) TCGA-D3-A8GL-06 13 99532859 99532859 G A DOCK9 Missense_Mutation p.S938F 0.35 tolerated(0.69) possibly_damaging(0.575) TCGA-D3-A8GL-06 14 100613233 100613233 G A DEGS2 Silent p.I279I 0.46 TCGA-D3-A8GL-06 14 100847982 100847982 C T WDR25 Missense_Mutation p.H241Y 0.40 tolerated(0.24) benign(0.014) TCGA-D3-A8GL-06 14 101450246 101450246 C T SNORD114-23 RNA 0.38 TCGA-D3-A8GL-06 14 101522630 101522630 C T MIR323B RNA 0.38 TCGA-D3-A8GL-06 14 101526930 101526930 G A MIR496 RNA 0.41 TCGA-D3-A8GL-06 14 101526951 101526951 C T MIR496 RNA 0.45 TCGA-D3-A8GL-06 14 101526986 101526986 C T MIR496 RNA 0.41 TCGA-D3-A8GL-06 14 102471260 102471260 C T DYNC1H1 Silent p.T1737T 0.42 TCGA-D3-A8GL-06 14 103390068 103390068 A G AMN Missense_Mutation p.K22E 0.49 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 14 104578914 104578914 C T ASPG 3'UTR 0.56 TCGA-D3-A8GL-06 14 104642587 104642587 G A KIF26A Silent p.G1154G 0.69 TCGA-D3-A8GL-06 14 105408909 105408909 G A AHNAK2 Silent p.A4293A 0.45 TCGA-D3-A8GL-06 14 105408983 105408983 C T AHNAK2 Missense_Mutation p.E4269K 0.43 benign(0.107) TCGA-D3-A8GL-06 14 105413145 105413145 G A AHNAK2 Silent p.L2881L 0.50 TCGA-D3-A8GL-06 14 105419475 105419475 C T AHNAK2 Silent p.V771V 0.46 TCGA-D3-A8GL-06 14 106208092 106208092 G A IGHG1 Silent p.S237S 0.39 TCGA-D3-A8GL-06 14 106209273 106209273 G A IGHG1 Silent p.L46L 0.38 TCGA-D3-A8GL-06 14 106478500 106478500 G A IGHV4-4 Missense_Mutation p.P14S 0.37 deleterious_low_confidence(0.03) benign(0.436) TCGA-D3-A8GL-06 14 106552703 106552703 G A IGHV3-9 Silent p.F9F 0.97 TCGA-D3-A8GL-06 14 106668007 106668007 G A IGHV3-20 Silent p.F9F 0.37 TCGA-D3-A8GL-06 14 106725289 106725289 G A IGHV3-23 Missense_Mutation p.T88I 0.17 deleterious_low_confidence(0.03) benign(0.296) TCGA-D3-A8GL-06 14 106866598 106866598 C T IGHV3-38 Silent p.E52E 0.44 TCGA-D3-A8GL-06 14 107078501 107078501 C T IGHV1-58 Missense_Mutation p.G75S 0.44 benign(0.257) TCGA-D3-A8GL-06 14 19559057 19559057 C T POTEG Missense_Mutation p.P235S 0.17 tolerated(0.48) benign(0.217) TCGA-D3-A8GL-06 14 19559132 19559132 T C POTEG Silent p.L260L 0.13 TCGA-D3-A8GL-06 14 20248756 20248756 T G OR4M1 Missense_Mutation p.I92S 0.28 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GL-06 14 20249030 20249030 G A OR4M1 Silent p.Q183Q 0.26 TCGA-D3-A8GL-06 14 20249249 20249249 C T OR4M1 Silent p.S256S 0.32 TCGA-D3-A8GL-06 14 20296097 20296097 C T OR4N2 Missense_Mutation p.L164F 0.25 tolerated(0.07) possibly_damaging(0.691) TCGA-D3-A8GL-06 14 20345329 20345329 G A OR4K2 Silent p.L301L 0.25 TCGA-D3-A8GL-06 14 20404131 20404131 C T OR4K1 Silent p.F102F 0.25 TCGA-D3-A8GL-06 14 20404501 20404501 C T OR4K1 Nonsense_Mutation p.R226* 0.34 TCGA-D3-A8GL-06 14 20586150 20586150 G A OR4K17 Silent p.V195V 0.48 TCGA-D3-A8GL-06 14 20612544 20612544 C T OR4N5 Missense_Mutation p.S217F 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 14 20666456 20666456 C T OR11G2 Missense_Mutation p.P321L 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 14 20841519 20841519 G A TEP1 Missense_Mutation p.R2242C 0.63 tolerated(0.14) possibly_damaging(0.759) TCGA-D3-A8GL-06 14 20841520 20841520 G A TEP1 Silent p.V2241V 0.62 TCGA-D3-A8GL-06 14 21458144 21458144 C T METTL17 5'UTR 0.35 TCGA-D3-A8GL-06 14 21991052 21991052 C T SALL2 Missense_Mutation p.G937E 0.53 tolerated(0.2) probably_damaging(1) TCGA-D3-A8GL-06 14 22090071 22090071 C T TRAV1-1 Silent p.F5F 0.38 TCGA-D3-A8GL-06 14 22133574 22133574 C T OR4E2 Missense_Mutation p.S93F 0.43 deleterious(0.01) benign(0.049) TCGA-D3-A8GL-06 14 22134040 22134040 C T OR4E2 Silent p.A248A 0.42 TCGA-D3-A8GL-06 14 22280042 22280042 G A TRAV9-1 Silent p.R77R 0.46 TCGA-D3-A8GL-06 14 22320911 22320911 G A TRAV8-3 Silent p.V23V 0.33 TCGA-D3-A8GL-06 14 22409339 22409339 C T TRAV9-2 5'UTR 0.39 TCGA-D3-A8GL-06 14 22447307 22447307 G A TRAV8-6 Silent p.R96R 0.49 TCGA-D3-A8GL-06 14 22471850 22471850 C T TRAV18 Silent p.F91F 0.41 TCGA-D3-A8GL-06 14 22675928 22675928 G A TRAV34 Silent p.K80K 0.50 TCGA-D3-A8GL-06 14 23341949 23341949 G A LRP10 Missense_Mutation p.G13S 0.52 tolerated(0.05) unknown(0) TCGA-D3-A8GL-06 14 23587961 23587961 C T CEBPE Missense_Mutation p.D114N 0.47 tolerated(0.39) benign(0.369) TCGA-D3-A8GL-06 14 23897087 23897087 G A MYH7 Missense_Mutation p.S532F 0.39 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GL-06 14 24436531 24436531 C T DHRS4 Intron 0.62 TCGA-D3-A8GL-06 14 24739638 24739638 G A RABGGTA Silent p.S47S 0.23 TCGA-D3-A8GL-06 14 24739639 24739639 G A RABGGTA Missense_Mutation p.S47F 0.23 deleterious(0) probably_damaging(0.918) TCGA-D3-A8GL-06 14 24805390 24805390 G A RIPK3 Silent p.S516S 0.42 TCGA-D3-A8GL-06 14 24846804 24846804 C T NFATC4 3'UTR 0.27 TCGA-D3-A8GL-06 14 24877583 24877583 C T NYNRIN Missense_Mutation p.S236F 0.36 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-D3-A8GL-06 14 24878033 24878033 C T NYNRIN Missense_Mutation p.P345S 0.29 tolerated_low_confidence(0.24) benign(0.043) TCGA-D3-A8GL-06 14 34029364 34029364 G A NPAS3 Missense_Mutation p.G169E 0.52 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GL-06 14 34243617 34243617 G A NPAS3 Missense_Mutation p.M309I 0.51 tolerated(0.14) benign(0.38) TCGA-D3-A8GL-06 14 38679155 38679155 C T SSTR1 Silent p.L187L 0.42 TCGA-D3-A8GL-06 14 38679809 38679809 G A SSTR1 3'UTR 0.56 TCGA-D3-A8GL-06 14 38723753 38723753 C T CLEC14A 3'UTR 0.29 TCGA-D3-A8GL-06 14 50625347 50625347 T C SOS2 Missense_Mutation p.T624A 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 14 51134595 51134595 G A SAV1 Missense_Mutation p.R31W 0.44 deleterious(0) possibly_damaging(0.727) TCGA-D3-A8GL-06 14 60070631 60070631 G A RTN1 Silent p.V707V 0.37 TCGA-D3-A8GL-06 14 60193698 60193698 C T RTN1 Silent p.K568K 0.65 TCGA-D3-A8GL-06 14 60212426 60212426 C T RTN1 Missense_Mutation p.E339K 0.44 tolerated(0.06) benign(0.069) TCGA-D3-A8GL-06 14 61451473 61451473 C T SLC38A6 Silent p.L88L 0.29 TCGA-D3-A8GL-06 14 62462985 62462985 C T SYT16 Missense_Mutation p.S83F 0.40 tolerated_low_confidence(0.14) benign(0.003) TCGA-D3-A8GL-06 14 63174915 63174915 G A KCNH5 Missense_Mutation p.P760S 0.43 deleterious(0.04) benign(0.03) TCGA-D3-A8GL-06 14 63269091 63269091 C T KCNH5 Missense_Mutation p.G593E 0.46 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.37 TCGA-D3-A8GL-06 14 64954108 64954108 C T ZBTB25 Missense_Mutation p.E281K 0.34 deleterious(0.01) benign(0.076) TCGA-D3-A8GL-06 14 67382741 67382741 G A GPHN Silent p.G137G 0.51 TCGA-D3-A8GL-06 14 69704541 69704541 C T EXD2 Silent p.S514S 0.30 TCGA-D3-A8GL-06 14 69814708 69814708 G A GALNT16 Missense_Mutation p.E510K 0.42 deleterious(0.02) possibly_damaging(0.747) TCGA-D3-A8GL-06 14 70989374 70989374 G A ADAM20 Missense_Mutation p.P751S 0.41 tolerated(0.43) benign(0.034) TCGA-D3-A8GL-06 14 73464670 73464670 G A ZFYVE1 Silent p.F279F 0.47 TCGA-D3-A8GL-06 14 74061866 74061866 G A ACOT4 Silent p.G258G 0.54 TCGA-D3-A8GL-06 14 74727431 74727431 G A VSX2 Missense_Mutation p.E299K 0.45 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GL-06 14 74763040 74763040 G A ABCD4 Nonsense_Mutation p.Q180* 0.48 TCGA-D3-A8GL-06 14 74824503 74824503 C T VRTN Silent p.F339F 0.30 TCGA-D3-A8GL-06 14 74825118 74825118 G A VRTN Nonsense_Mutation p.W544* 0.39 TCGA-D3-A8GL-06 14 75017968 75017968 C T LTBP2 Silent p.R495R 0.67 TCGA-D3-A8GL-06 14 75412936 75412936 C T PGF Silent p.Q155Q 0.35 TCGA-D3-A8GL-06 14 75747923 75747923 G A FOS Missense_Mutation p.M313I 0.58 tolerated_low_confidence(0.73) benign(0.003) TCGA-D3-A8GL-06 14 76452122 76452122 C T IFT43 5'Flank 0.37 TCGA-D3-A8GL-06 14 76965089 76965089 C T ESRRB Intron 0.57 TCGA-D3-A8GL-06 14 77950739 77950739 G A ISM2 Missense_Mutation p.P185L 0.44 deleterious(0) unknown(0) TCGA-D3-A8GL-06 14 88737130 88737130 C T KCNK10 Intron 0.38 TCGA-D3-A8GL-06 14 91773403 91773403 C T CCDC88C Silent p.R1058R 0.55 TCGA-D3-A8GL-06 14 92174508 92174508 C T CATSPERB Missense_Mutation p.G148E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 14 92403427 92403427 C T FBLN5 Silent p.S81S 0.45 TCGA-D3-A8GL-06 14 93944044 93944044 C T UNC79 Missense_Mutation p.L20F 0.33 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GL-06 14 93963568 93963568 C T UNC79 Silent p.F101F 0.52 TCGA-D3-A8GL-06 14 94063754 94063754 C G UNC79 Silent p.T903T 0.45 TCGA-D3-A8GL-06 14 94079376 94079376 C T UNC79 Nonsense_Mutation p.Q1153* 0.41 TCGA-D3-A8GL-06 14 94712714 94712714 G A PPP4R4 Silent p.L483L 0.40 TCGA-D3-A8GL-06 14 94845704 94845704 C T SERPINA1 Intron 0.55 TCGA-D3-A8GL-06 14 94964375 94964375 G A SERPINA12 Silent p.I120I 0.44 TCGA-D3-A8GL-06 14 96706980 96706980 C T BDKRB2 Silent p.I105I 0.41 TCGA-D3-A8GL-06 14 96730686 96730686 T C BDKRB1 Missense_Mutation p.Y223H 0.53 tolerated(0.36) benign(0.041) TCGA-D3-A8GL-06 14 97009108 97009108 C T PAPOLA Intron 0.39 TCGA-D3-A8GL-06 14 99865066 99865066 C T SETD3 Missense_Mutation p.E579K 0.45 tolerated_low_confidence(0.41) benign(0.001) TCGA-D3-A8GL-06 15 100332676 100332676 G A AC090825.1 3'Flank 0.22 TCGA-D3-A8GL-06 15 101024808 101024808 C T CERS3 Silent p.R118R 0.40 TCGA-D3-A8GL-06 15 101445877 101445877 G A ALDH1A3 Silent p.R406R 0.60 TCGA-D3-A8GL-06 15 101871887 101871887 G A PCSK6 Silent p.S681S 0.74 TCGA-D3-A8GL-06 15 102190219 102190219 A G TM2D3 Silent p.S105S 0.40 TCGA-D3-A8GL-06 15 102211704 102211704 T A TARSL2 Missense_Mutation p.N651I 0.31 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GL-06 15 20649647 20649647 C T HERC2P3 RNA 0.27 TCGA-D3-A8GL-06 15 22332614 22332614 T C RP11-69H14.6 RNA 0.24 TCGA-D3-A8GL-06 15 22332708 22332708 C T RP11-69H14.6 RNA 0.16 TCGA-D3-A8GL-06 15 22368705 22368705 C T OR4M2 Missense_Mutation p.L44F 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-D3-A8GL-06 15 22369046 22369046 C T OR4M2 Silent p.I157I 0.15 TCGA-D3-A8GL-06 15 22369322 22369322 G A OR4M2 Silent p.V249V 0.17 TCGA-D3-A8GL-06 15 22369342 22369342 C T OR4M2 Missense_Mutation p.S256F 0.12 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GL-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.18 deleterious(0.01) benign(0.037) TCGA-D3-A8GL-06 15 24921642 24921642 G A NPAP1 Missense_Mutation p.G210R 0.29 tolerated(0.85) possibly_damaging(0.797) TCGA-D3-A8GL-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.66 tolerated(0.26) probably_damaging(0.991) TCGA-D3-A8GL-06 15 24923412 24923412 C T NPAP1 Missense_Mutation p.P800S 0.62 tolerated_low_confidence(0.24) possibly_damaging(0.803) TCGA-D3-A8GL-06 15 25421977 25421977 T C SNORD115-6 5'Flank 0.33 TCGA-D3-A8GL-06 15 25438503 25438503 G A SNORD115-11 3'Flank 0.28 TCGA-D3-A8GL-06 15 25496072 25496072 G A SNORD115-44 RNA 0.60 TCGA-D3-A8GL-06 15 26812789 26812789 C T GABRB3 Silent p.T258T 0.41 TCGA-D3-A8GL-06 15 27777970 27777970 C T GABRG3 Silent p.F449F 0.16 TCGA-D3-A8GL-06 15 28502359 28502359 G A HERC2 Missense_Mutation p.P789S 0.60 possibly_damaging(0.622) TCGA-D3-A8GL-06 15 28903869 28903869 C T HERC2P9 RNA 0.34 TCGA-D3-A8GL-06 15 29409268 29409268 C T APBA2 Missense_Mutation p.H728Y 0.34 deleterious(0.02) possibly_damaging(0.715) TCGA-D3-A8GL-06 15 33359334 33359334 G A FMN1 Missense_Mutation p.S251L 0.29 tolerated_low_confidence(0.42) unknown(0) TCGA-D3-A8GL-06 15 33938568 33938568 G A RYR3 Missense_Mutation p.G1261D 0.57 possibly_damaging(0.807) TCGA-D3-A8GL-06 15 33991977 33991977 C T RYR3 Nonsense_Mutation p.Q2108* 0.73 TCGA-D3-A8GL-06 15 34547534 34547534 C T SLC12A6 Missense_Mutation p.G269S 0.64 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 15 35045271 35045271 C T GJD2 Missense_Mutation p.G125E 0.66 tolerated(1) unknown(0) TCGA-D3-A8GL-06 15 35084727 35084727 G A ACTC1 Silent p.P166P 0.65 TCGA-D3-A8GL-06 15 39883514 39883514 G A THBS1 Silent p.G792G 0.33 TCGA-D3-A8GL-06 15 39883515 39883515 G A THBS1 Missense_Mutation p.E793K 0.32 tolerated(0.19) probably_damaging(0.979) TCGA-D3-A8GL-06 15 40093275 40093275 C T GPR176 3'UTR 0.29 TCGA-D3-A8GL-06 15 40751947 40751947 C T BAHD1 Silent p.F428F 0.57 TCGA-D3-A8GL-06 15 40754124 40754124 C T BAHD1 Silent p.S482S 0.65 TCGA-D3-A8GL-06 15 40866245 40866245 T C RPUSD2 Silent p.L475L 0.33 TCGA-D3-A8GL-06 15 40949258 40949258 C T CASC5 Missense_Mutation p.S2194F 0.65 tolerated(0.13) possibly_damaging(0.902) TCGA-D3-A8GL-06 15 41106251 41106251 C T ZFYVE19 Silent p.F440F 0.60 TCGA-D3-A8GL-06 15 41339648 41339648 G A INO80 Missense_Mutation p.P898L 0.30 tolerated(0.11) benign(0.385) TCGA-D3-A8GL-06 15 42742468 42742468 G A ZNF106 Missense_Mutation p.P645S 0.27 tolerated(1) benign(0) TCGA-D3-A8GL-06 15 42742956 42742956 G T ZNF106 Missense_Mutation p.S482Y 0.28 tolerated(1) benign(0.032) TCGA-D3-A8GL-06 15 44180459 44180459 C T FRMD5 Silent p.K266K 0.59 TCGA-D3-A8GL-06 15 44695174 44695174 G A CASC4 Missense_Mutation p.E388K 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 15 45332620 45332620 C T SORD Silent p.I27I 0.53 TCGA-D3-A8GL-06 15 45388254 45388254 C T DUOX2 Silent p.V1284V 0.29 TCGA-D3-A8GL-06 15 45398482 45398482 G A DUOX2 Silent p.I663I 0.29 TCGA-D3-A8GL-06 15 45694557 45694557 C T SPATA5L1 5'UTR 0.40 TCGA-D3-A8GL-06 15 48512865 48512865 T C SLC12A1 Missense_Mutation p.V152A 0.68 tolerated(0.52) possibly_damaging(0.651) TCGA-D3-A8GL-06 15 48802353 48802353 A G FBN1 Silent p.C534C 0.30 TCGA-D3-A8GL-06 15 49431765 49431765 G A COPS2 Missense_Mutation p.S111F 0.58 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GL-06 15 49509422 49509422 C T GALK2 Missense_Mutation p.P60S 0.35 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 15 50366354 50366354 G A ATP8B4 Silent p.D19D 0.59 TCGA-D3-A8GL-06 15 51350166 51350166 G A TNFAIP8L3 Missense_Mutation p.T264I 0.58 deleterious(0.02) possibly_damaging(0.859) TCGA-D3-A8GL-06 15 52902061 52902061 C G FAM214A Missense_Mutation p.Q350H 0.71 tolerated(0.58) benign(0.008) TCGA-D3-A8GL-06 15 54307324 54307324 C T UNC13C Nonsense_Mutation p.Q742* 0.44 TCGA-D3-A8GL-06 15 54556445 54556445 G A UNC13C Silent p.K1176K 0.81 TCGA-D3-A8GL-06 15 56385779 56385779 C T RFX7 Missense_Mutation p.D1383N 0.63 tolerated_low_confidence(0.06) probably_damaging(0.932) TCGA-D3-A8GL-06 15 59080102 59080102 C T FAM63B Intron 0.70 TCGA-D3-A8GL-06 15 62316045 62316045 C T VPS13C Splice_Site p.X150_splice 0.23 TCGA-D3-A8GL-06 15 63004201 63004201 G A TLN2 Missense_Mutation p.M853I 0.22 tolerated(0.2) benign(0) TCGA-D3-A8GL-06 15 63594638 63594638 C T APH1B Silent p.I191I 0.30 TCGA-D3-A8GL-06 15 63950916 63950916 A G HERC1 Silent p.G3142G 0.49 TCGA-D3-A8GL-06 15 65157534 65157534 G A PLEKHO2 Missense_Mutation p.G307E 0.66 tolerated(0.88) benign(0.424) TCGA-D3-A8GL-06 15 65256011 65256011 C T SPG21 Missense_Mutation p.E293K 0.32 tolerated_low_confidence(0.08) benign(0.411) TCGA-D3-A8GL-06 15 65621886 65621886 G A IGDCC3 Missense_Mutation p.P683S 0.53 tolerated_low_confidence(0.05) benign(0.146) TCGA-D3-A8GL-06 15 67652220 67652220 G A IQCH Silent p.R250R 0.67 TCGA-D3-A8GL-06 15 68378987 68378987 C T PIAS1 Missense_Mutation p.P123L 0.28 tolerated(0.08) benign(0.216) TCGA-D3-A8GL-06 15 72040893 72040893 C T THSD4 Missense_Mutation p.P792L 0.52 deleterious(0) possibly_damaging(0.513) TCGA-D3-A8GL-06 15 72640403 72640403 G A HEXA Silent p.S353S 0.27 TCGA-D3-A8GL-06 15 72958022 72958022 G A GOLGA6B Missense_Mutation p.G560E 0.14 tolerated(0.45) probably_damaging(0.969) TCGA-D3-A8GL-06 15 74335532 74335532 C T PML Intron 0.61 TCGA-D3-A8GL-06 15 74367329 74367329 G A GOLGA6A Silent p.S287S 0.41 TCGA-D3-A8GL-06 15 75499524 75499524 C T C15orf39 Missense_Mutation p.P379S 0.66 deleterious(0.05) possibly_damaging(0.803) TCGA-D3-A8GL-06 15 75555716 75555716 C T GOLGA6C Nonsense_Mutation p.Q105* 0.31 TCGA-D3-A8GL-06 15 77287835 77287835 G A PSTPIP1 5'UTR 0.50 TCGA-D3-A8GL-06 15 77323527 77323527 C T PSTPIP1 Nonsense_Mutation p.Q217* 0.27 TCGA-D3-A8GL-06 15 78921923 78921923 G A CHRNB4 Missense_Mutation p.P242S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 15 78921924 78921924 G A CHRNB4 Silent p.I241I 0.31 TCGA-D3-A8GL-06 15 79614607 79614607 C T TMED3 3'UTR 0.38 TCGA-D3-A8GL-06 15 79749814 79749814 C T KIAA1024 Missense_Mutation p.S442F 0.31 deleterious(0.01) possibly_damaging(0.681) TCGA-D3-A8GL-06 15 82444611 82444611 G A EFTUD1 Silent p.I728I 0.28 TCGA-D3-A8GL-06 15 83932810 83932810 G A BNC1 Missense_Mutation p.S398F 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 15 88678573 88678573 G A NTRK3 Silent p.I321I 0.77 TCGA-D3-A8GL-06 15 89444954 89444954 G A MFGE8 Missense_Mutation p.P233L 0.68 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GL-06 15 90798992 90798992 C T TTLL13 Silent p.I141I 0.59 TCGA-D3-A8GL-06 15 91333876 91333876 C T BLM Intron 0.65 TCGA-D3-A8GL-06 15 93043792 93043792 G A C15orf32 3'UTR 0.45 TCGA-D3-A8GL-06 15 95013658 95013658 C T MCTP2 Silent p.I819I 0.59 TCGA-D3-A8GL-06 15 96869538 96869538 G A NR2F2 5'Flank 0.23 TCGA-D3-A8GL-06 16 10631805 10631805 G A EMP2 Missense_Mutation p.S99F 0.48 tolerated(0.1) benign(0.119) TCGA-D3-A8GL-06 16 10997738 10997738 G A CIITA Missense_Mutation p.R308Q 0.41 tolerated(0.2) benign(0.148) TCGA-D3-A8GL-06 16 11272416 11272416 C T CLEC16A Missense_Mutation p.P1011S 0.43 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D3-A8GL-06 16 19047009 19047009 G A TMC7 Missense_Mutation p.G290E 0.46 deleterious(0.03) possibly_damaging(0.842) TCGA-D3-A8GL-06 16 20352563 20352563 G A UMOD Missense_Mutation p.S476F 0.44 deleterious(0.01) probably_damaging(0.917) TCGA-D3-A8GL-06 16 20373729 20373729 T C PDILT Silent p.Q471Q 0.46 TCGA-D3-A8GL-06 16 20480852 20480852 G A ACSM2A Missense_Mutation p.G136E 0.48 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 16 20498176 20498176 G A ACSM2A 3'UTR 0.53 TCGA-D3-A8GL-06 16 20576053 20576053 C T ACSM2B Missense_Mutation p.E39K 0.47 deleterious(0.04) benign(0.006) TCGA-D3-A8GL-06 16 20634840 20634840 C T ACSM1 Missense_Mutation p.E568K 0.35 tolerated(0.3) possibly_damaging(0.745) TCGA-D3-A8GL-06 16 20636819 20636819 C T ACSM1 Missense_Mutation p.E485K 0.45 deleterious(0.01) possibly_damaging(0.496) TCGA-D3-A8GL-06 16 20702514 20702514 G A ACSM1 5'UTR 0.49 TCGA-D3-A8GL-06 16 20975047 20975047 C T DNAH3 Missense_Mutation p.E3387K 0.44 tolerated(0.53) benign(0.001) TCGA-D3-A8GL-06 16 20976695 20976695 C T DNAH3 Silent p.L2837L 0.42 TCGA-D3-A8GL-06 16 21035922 21035922 T C DNAH3 Missense_Mutation p.E1881G 0.48 deleterious(0.04) benign(0.009) TCGA-D3-A8GL-06 16 2139940 2139940 C T PKD1 Missense_Mutation p.E4234K 0.31 benign(0.001) TCGA-D3-A8GL-06 16 2153554 2153554 G A PKD1 Missense_Mutation p.P2835L 0.49 probably_damaging(0.996) TCGA-D3-A8GL-06 16 22327960 22327960 C T POLR3E Silent p.C227C 0.41 TCGA-D3-A8GL-06 16 22926571 22926571 C T HS3ST2 Silent p.F264F 0.48 TCGA-D3-A8GL-06 16 22926749 22926749 C T HS3ST2 Nonsense_Mutation p.R324* 0.49 TCGA-D3-A8GL-06 16 23226091 23226091 G A SCNN1G Missense_Mutation p.E518K 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 16 24166055 24166055 C T PRKCB Silent p.I372I 0.45 TCGA-D3-A8GL-06 16 27692775 27692775 C T KIAA0556 Silent p.F288F 0.51 TCGA-D3-A8GL-06 16 28374120 28374120 C T NPIPB6 Silent p.L8L 0.33 TCGA-D3-A8GL-06 16 28488890 28488890 G A CLN3 Silent p.L422L 0.40 TCGA-D3-A8GL-06 16 29676214 29676214 C T SPN Missense_Mutation p.P389S 0.23 tolerated(1) probably_damaging(0.932) TCGA-D3-A8GL-06 16 29842365 29842365 C T MVP Missense_Mutation p.P98S 0.52 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 16 29848107 29848107 G A MVP Missense_Mutation p.G246E 0.37 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GL-06 16 30365330 30365330 G A CD2BP2 Silent p.P89P 0.45 TCGA-D3-A8GL-06 16 30779659 30779659 C T RNF40 Missense_Mutation p.A596V 0.59 tolerated(0.3) benign(0.001) TCGA-D3-A8GL-06 16 3100122 3100122 G A MMP25 Nonsense_Mutation p.W115* 0.46 TCGA-D3-A8GL-06 16 31151735 31151735 G A PRSS36 Silent p.V723V 0.33 TCGA-D3-A8GL-06 16 31286900 31286900 C T ITGAM Missense_Mutation p.R297C 0.39 tolerated(0.08) possibly_damaging(0.905) TCGA-D3-A8GL-06 16 31435274 31435274 C T ITGAD Missense_Mutation p.R1052C 0.52 deleterious(0.02) benign(0.217) TCGA-D3-A8GL-06 16 31502083 31502083 C T SLC5A2 3'UTR 0.38 TCGA-D3-A8GL-06 16 3294588 3294588 C T MEFV Silent p.R537R 0.48 TCGA-D3-A8GL-06 16 3614218 3614218 C T NLRC3 Silent p.K287K 0.52 TCGA-D3-A8GL-06 16 47536921 47536921 G A PHKB Missense_Mutation p.G109R 0.48 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GL-06 16 47536922 47536922 G A PHKB Missense_Mutation p.G109E 0.48 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GL-06 16 48385567 48385567 G T LONP2 Nonsense_Mutation p.E805* 0.58 TCGA-D3-A8GL-06 16 5064955 5064955 C T SEC14L5 Missense_Mutation p.S692F 0.31 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GL-06 16 51171310 51171310 G A SALL1 Missense_Mutation p.P1230S 0.36 deleterious(0.04) possibly_damaging(0.834) TCGA-D3-A8GL-06 16 51171340 51171340 C T SALL1 Missense_Mutation p.D1220N 0.44 deleterious(0.02) benign(0.17) TCGA-D3-A8GL-06 16 51174364 51174364 G A SALL1 Missense_Mutation p.S590L 0.50 tolerated(0.71) benign(0.003) TCGA-D3-A8GL-06 16 55880405 55880405 G A CES5A Silent p.F591F 0.42 TCGA-D3-A8GL-06 16 57238827 57238827 G T RSPRY1 Missense_Mutation p.R86M 0.41 tolerated(0.22) possibly_damaging(0.809) TCGA-D3-A8GL-06 16 57731909 57731909 G A CCDC135 Silent p.R16R 0.35 TCGA-D3-A8GL-06 16 57778395 57778395 C T KATNB1 Silent p.I87I 0.45 TCGA-D3-A8GL-06 16 57931750 57931750 C T CNGB1 Silent p.G1015G 0.49 TCGA-D3-A8GL-06 16 61760853 61760853 C T CDH8 Intron 0.60 TCGA-D3-A8GL-06 16 61761046 61761046 G A CDH8 Silent p.F496F 0.43 TCGA-D3-A8GL-06 16 65032636 65032636 G A CDH11 Nonsense_Mutation p.R118* 0.50 TCGA-D3-A8GL-06 16 67424445 67424445 C T TPPP3 Silent p.E93E 0.41 TCGA-D3-A8GL-06 16 71015370 71015370 C T HYDIN Silent p.L1478L 0.47 TCGA-D3-A8GL-06 16 71098670 71098670 C T HYDIN Missense_Mutation p.E717K 0.39 benign(0.001) TCGA-D3-A8GL-06 16 71127836 71127836 G A HYDIN Nonsense_Mutation p.R444* 0.36 TCGA-D3-A8GL-06 16 71186678 71186678 G A HYDIN Missense_Mutation p.S242F 0.33 possibly_damaging(0.722) TCGA-D3-A8GL-06 16 71406073 71406073 G A CALB2 Missense_Mutation p.G38S 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GL-06 16 71423652 71423652 G A CALB2 Missense_Mutation p.E234K 0.41 deleterious(0.02) possibly_damaging(0.647) TCGA-D3-A8GL-06 16 71604663 71604663 C T TAT Silent p.G277G 0.50 TCGA-D3-A8GL-06 16 72832265 72832265 C T ZFHX3 Missense_Mutation p.R1439Q 0.50 probably_damaging(0.978) TCGA-D3-A8GL-06 16 76528911 76528911 A T CNTNAP4 Missense_Mutation p.N656Y 0.43 deleterious(0) benign(0.439) TCGA-D3-A8GL-06 16 77327119 77327119 C T ADAMTS18 Missense_Mutation p.E1015K 0.51 tolerated(0.84) benign(0.016) TCGA-D3-A8GL-06 16 77353946 77353946 C T ADAMTS18 Missense_Mutation p.E778K 0.46 tolerated(0.3) benign(0.041) TCGA-D3-A8GL-06 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.44 tolerated(1) benign(0.004) TCGA-D3-A8GL-06 16 77850885 77850885 G A VAT1L Missense_Mutation p.V101M 0.50 deleterious(0.01) possibly_damaging(0.706) TCGA-D3-A8GL-06 16 78312542 78312542 A T WWOX Intron 0.41 TCGA-D3-A8GL-06 16 80666994 80666994 G A CDYL2 Silent p.I252I 0.37 TCGA-D3-A8GL-06 16 83636170 83636170 G A CDH13 Missense_Mutation p.D405N 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 16 84101422 84101422 A G MBTPS1 Missense_Mutation p.L693S 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 16 84228662 84228662 C T ADAD2 Intron 0.50 TCGA-D3-A8GL-06 16 85143980 85143980 G A FAM92B Missense_Mutation p.T36M 0.07 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GL-06 16 85697000 85697000 G A GSE1 Silent p.E808E 0.44 TCGA-D3-A8GL-06 16 87678404 87678404 G A JPH3 Missense_Mutation p.G308E 0.43 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GL-06 16 89598932 89598932 C T SPG7 Silent p.I404I 0.36 TCGA-D3-A8GL-06 16 8996278 8996278 C T USP7 Missense_Mutation p.R634Q 0.51 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 16 9857061 9857061 G A GRIN2A Missense_Mutation p.S1447F 0.49 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GL-06 16 9857944 9857944 C T GRIN2A Missense_Mutation p.D1153N 0.46 deleterious(0.02) possibly_damaging(0.606) TCGA-D3-A8GL-06 16 9858218 9858218 A T GRIN2A Silent p.I1061I 0.51 TCGA-D3-A8GL-06 16 9923378 9923378 A G GRIN2A Missense_Mutation p.F637L 0.45 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 17 10304736 10304736 C T MYH8 Silent p.L988L 0.85 TCGA-D3-A8GL-06 17 10307806 10307806 G T MYH8 Silent p.L843L 0.78 TCGA-D3-A8GL-06 17 10356613 10356613 C T MYH4 Silent p.L989L 0.85 TCGA-D3-A8GL-06 17 10404673 10404673 C T MYH1 Silent p.Q1164Q 0.84 TCGA-D3-A8GL-06 17 10406229 10406229 C T MYH1 Silent p.V979V 0.88 TCGA-D3-A8GL-06 17 10558265 10558265 G A MYH3 Silent p.F39F 0.91 TCGA-D3-A8GL-06 17 10614333 10614333 G A ADPRM Missense_Mutation p.E301K 0.86 deleterious(0) possibly_damaging(0.883) TCGA-D3-A8GL-06 17 11572549 11572549 C T DNAH9 Missense_Mutation p.S967F 0.88 benign(0.344) TCGA-D3-A8GL-06 17 1381943 1381943 G A MYO1C Silent p.L393L 0.82 TCGA-D3-A8GL-06 17 16068475 16068475 C T NCOR1 Missense_Mutation p.D146N 0.16 benign(0.014) TCGA-D3-A8GL-06 17 17046935 17046935 C T MPRIP Silent p.H367H 0.73 TCGA-D3-A8GL-06 17 26099415 26099415 G A NOS2 Silent p.I541I 0.48 TCGA-D3-A8GL-06 17 26946772 26946772 T G KIAA0100 Missense_Mutation p.N1848H 0.27 deleterious(0.02) probably_damaging(0.962) TCGA-D3-A8GL-06 17 2909254 2909254 G A RAP1GAP2 Silent p.P426P 0.72 TCGA-D3-A8GL-06 17 3030360 3030360 C T OR1G1 Silent p.L162L 0.84 TCGA-D3-A8GL-06 17 31098206 31098206 G A MYO1D Silent p.R217R 0.44 TCGA-D3-A8GL-06 17 32598270 32598270 G A CCL7 Missense_Mutation p.R61Q 0.46 tolerated(1) benign(0.01) TCGA-D3-A8GL-06 17 32647307 32647307 C T CCL8 Silent p.I32I 0.34 TCGA-D3-A8GL-06 17 33310197 33310197 C T LIG3 Missense_Mutation p.S58L 0.59 tolerated_low_confidence(0.25) benign(0.001) TCGA-D3-A8GL-06 17 3336428 3336428 C T OR1E2 Silent p.K236K 1.00 TCGA-D3-A8GL-06 17 33521042 33521042 C T SLC35G3 Silent p.L95L 0.49 TCGA-D3-A8GL-06 17 33749241 33749241 C T SLFN12 Silent p.R269R 0.40 TCGA-D3-A8GL-06 17 33806688 33806688 G A SLFN12L Missense_Mutation p.P181S 0.48 tolerated(0.71) benign(0.036) TCGA-D3-A8GL-06 17 34062198 34062198 G A RASL10B 5'UTR 0.35 TCGA-D3-A8GL-06 17 34072904 34072904 G A GAS2L2 Silent p.L538L 0.37 TCGA-D3-A8GL-06 17 34233592 34233592 C T AC015849.16 RNA 0.31 TCGA-D3-A8GL-06 17 34235708 34235708 G A AC015849.16 RNA 0.44 TCGA-D3-A8GL-06 17 34236186 34236186 G A AC015849.16 RNA 0.43 TCGA-D3-A8GL-06 17 34894511 34894511 G A PIGW 3'UTR 0.50 TCGA-D3-A8GL-06 17 35602044 35602044 G A ACACA Silent p.G849G 0.45 TCGA-D3-A8GL-06 17 36358998 36358998 C T RP11-1407O15.2 Silent p.V231V 0.29 TCGA-D3-A8GL-06 17 36485782 36485782 C T GPR179 Missense_Mutation p.E1224K 0.49 tolerated(0.07) probably_damaging(0.917) TCGA-D3-A8GL-06 17 36521233 36521233 C T SOCS7 Missense_Mutation p.P334L 0.54 tolerated_low_confidence(0.09) benign(0.019) TCGA-D3-A8GL-06 17 37093388 37093388 C T FBXO47 3'UTR 0.47 TCGA-D3-A8GL-06 17 37187302 37187302 C T CTD-2206N4.2 5'Flank 0.19 TCGA-D3-A8GL-06 17 37922202 37922202 G A IKZF3 Silent p.C457C 0.51 TCGA-D3-A8GL-06 17 38061134 38061134 G A GSDMB Silent p.L394L 0.45 TCGA-D3-A8GL-06 17 38562686 38562686 G A TOP2A Missense_Mutation p.R635C 0.34 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GL-06 17 38907514 38907514 C T KRT25 Missense_Mutation p.G245E 0.42 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GL-06 17 38911405 38911405 C T KRT25 Missense_Mutation p.G40E 0.49 tolerated(0.06) benign(0.157) TCGA-D3-A8GL-06 17 39183235 39183235 G T KRTAP1-5 Missense_Mutation p.S58Y 0.51 deleterious(0.01) unknown(0) TCGA-D3-A8GL-06 17 39279901 39279901 G A KRTAP4-12 Silent p.S158S 0.36 TCGA-D3-A8GL-06 17 39535831 39535831 G A KRT34 Silent p.F289F 0.37 TCGA-D3-A8GL-06 17 39535863 39535863 C T KRT34 Missense_Mutation p.E279K 0.53 deleterious(0) possibly_damaging(0.788) TCGA-D3-A8GL-06 17 39579998 39579998 C T KRT37 Intron 0.50 TCGA-D3-A8GL-06 17 39637082 39637082 C T KRT35 Missense_Mutation p.E90K 0.57 deleterious(0.02) benign(0.25) TCGA-D3-A8GL-06 17 39661814 39661814 G A KRT13 5'UTR 0.53 TCGA-D3-A8GL-06 17 39724502 39724502 C T KRT9 Missense_Mutation p.E436K 0.49 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 17 40343162 40343162 G A GHDC Missense_Mutation p.P319L 0.43 tolerated(0.37) benign(0.247) TCGA-D3-A8GL-06 17 40370752 40370752 G A STAT5B Silent p.A326A 0.61 TCGA-D3-A8GL-06 17 40370753 40370753 G A STAT5B Missense_Mutation p.A326V 0.63 deleterious(0.02) benign(0.217) TCGA-D3-A8GL-06 17 42274763 42274763 G A ATXN7L3 Silent p.I63I 0.35 TCGA-D3-A8GL-06 17 43037506 43037506 G A C1QL1 3'UTR 0.43 TCGA-D3-A8GL-06 17 43321162 43321162 G A FMNL1 Missense_Mutation p.D740N 0.50 tolerated(0.14) possibly_damaging(0.692) TCGA-D3-A8GL-06 17 45916992 45916992 C T SCRN2 Missense_Mutation p.S125N 0.48 deleterious(0) possibly_damaging(0.497) TCGA-D3-A8GL-06 17 46862498 46862498 C T TTLL6 Silent p.R609R 0.46 TCGA-D3-A8GL-06 17 48050598 48050598 C T DLX4 Nonsense_Mutation p.Q149* 0.51 TCGA-D3-A8GL-06 17 48262923 48262923 C T COL1A1 Silent p.L1445L 0.36 TCGA-D3-A8GL-06 17 48551941 48551941 T C ACSF2 3'UTR 0.62 TCGA-D3-A8GL-06 17 48653534 48653534 C T CACNA1G Missense_Mutation p.P591S 0.60 deleterious(0.03) benign(0.424) TCGA-D3-A8GL-06 17 5074892 5074892 G A USP6 Missense_Mutation p.G1322E 0.81 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GL-06 17 54555000 54555000 A T ANKFN1 Missense_Mutation p.N645I 0.37 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GL-06 17 54933978 54933978 C T DGKE Missense_Mutation p.L402F 0.45 tolerated(0.65) benign(0.408) TCGA-D3-A8GL-06 17 56051732 56051732 A G VEZF1 3'UTR 0.33 TCGA-D3-A8GL-06 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.44 TCGA-D3-A8GL-06 17 56345342 56345342 C T LPO Missense_Mutation p.S709L 0.68 deleterious(0) benign(0.247) TCGA-D3-A8GL-06 17 57287386 57287386 G A SMG8 5'UTR 0.52 TCGA-D3-A8GL-06 17 58121396 58121396 G A HEATR6 Missense_Mutation p.S1025F 0.37 deleterious(0) benign(0.429) TCGA-D3-A8GL-06 17 59858200 59858200 C T BRIP1 Splice_Site p.X598_splice 0.40 TCGA-D3-A8GL-06 17 60042787 60042787 G A MED13 Missense_Mutation p.S1475F 0.52 tolerated(0.71) benign(0.188) TCGA-D3-A8GL-06 17 60348753 60348753 C T TBC1D3P2 RNA 0.34 TCGA-D3-A8GL-06 17 61176595 61176595 C T TANC2 Missense_Mutation p.P67S 0.30 tolerated_low_confidence(0.18) benign(0) TCGA-D3-A8GL-06 17 61666552 61666552 C T DCAF7 3'UTR 0.49 TCGA-D3-A8GL-06 17 62018186 62018186 G A SCN4A Missense_Mutation p.P1819L 0.35 deleterious_low_confidence(0.02) benign(0) TCGA-D3-A8GL-06 17 62018187 62018187 G A SCN4A Missense_Mutation p.P1819S 0.34 tolerated_low_confidence(0.17) benign(0) TCGA-D3-A8GL-06 17 62892515 62892515 C T LRRC37A3 Silent p.E287E 0.15 TCGA-D3-A8GL-06 17 63198187 63198187 G A RGS9 Silent p.E351E 0.38 TCGA-D3-A8GL-06 17 66033567 66033567 C T KPNA2 Missense_Mutation p.P57S 0.47 tolerated(0.41) possibly_damaging(0.809) TCGA-D3-A8GL-06 17 67023475 67023475 G A ABCA9 Missense_Mutation p.P636L 0.33 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GL-06 17 67084376 67084376 G A ABCA6 Silent p.F1210F 0.40 TCGA-D3-A8GL-06 17 67133635 67133635 C G ABCA6 Missense_Mutation p.G35R 0.41 tolerated(0.22) possibly_damaging(0.888) TCGA-D3-A8GL-06 17 71228528 71228528 G A FAM104A 5'Flank 0.54 TCGA-D3-A8GL-06 17 71282118 71282118 G A CDC42EP4 Silent p.S174S 0.45 TCGA-D3-A8GL-06 17 73485715 73485715 C T KIAA0195 Missense_Mutation p.S309F 0.29 tolerated(0.11) benign(0.234) TCGA-D3-A8GL-06 17 73492069 73492069 C T KIAA0195 Silent p.I989I 0.29 TCGA-D3-A8GL-06 17 73725384 73725384 C T ITGB4 Missense_Mutation p.S202F 0.44 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GL-06 17 73998483 73998483 G A CDK3 Missense_Mutation p.R157H 0.11 deleterious(0.02) probably_damaging(0.981) TCGA-D3-A8GL-06 17 74097281 74097281 C T EXOC7 Intron 0.43 TCGA-D3-A8GL-06 17 74276999 74276999 G A QRICH2 Silent p.I1267I 0.47 TCGA-D3-A8GL-06 17 74739539 74739539 G A MFSD11 Splice_Site p.X166_splice 0.40 TCGA-D3-A8GL-06 17 7476166 7476166 G A EIF4A1 Missense_Mutation p.A3T 0.83 tolerated_low_confidence(0.1) benign(0.005) TCGA-D3-A8GL-06 17 75493407 75493407 C T SEPT9 Silent p.T528T 0.36 TCGA-D3-A8GL-06 17 7611564 7611564 C T EFNB3 Silent p.I137I 0.97 TCGA-D3-A8GL-06 17 76133875 76133875 C T TMC8 Silent p.F443F 0.41 TCGA-D3-A8GL-06 17 76455972 76455972 T G DNAH17 Missense_Mutation p.S3169R 0.55 possibly_damaging(0.771) TCGA-D3-A8GL-06 17 76496512 76496512 G A DNAH17 Missense_Mutation p.L1825F 0.52 probably_damaging(0.993) TCGA-D3-A8GL-06 17 76497211 76497211 C T DNAH17-AS1 3'UTR 0.47 TCGA-D3-A8GL-06 17 76694434 76694434 G A CYTH1 Missense_Mutation p.P243L 0.45 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A8GL-06 17 7751781 7751781 G A KDM6B Silent p.L725L 0.89 TCGA-D3-A8GL-06 17 77709334 77709334 G A ENPP7 Missense_Mutation p.D298N 0.47 tolerated(0.64) benign(0.004) TCGA-D3-A8GL-06 17 77758807 77758807 C T CBX2 Missense_Mutation p.T522I 0.43 deleterious(0) benign(0.388) TCGA-D3-A8GL-06 17 78069091 78069091 G A CCDC40 Silent p.Q954Q 0.38 TCGA-D3-A8GL-06 17 78086418 78086418 C T GAA Missense_Mutation p.S599F 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 17 78396028 78396028 G A ENDOV Missense_Mutation p.G129E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 17 78447115 78447115 G A NPTX1 Missense_Mutation p.S261F 0.42 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GL-06 17 79207795 79207795 G A ENTHD2 Missense_Mutation p.R121C 0.32 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GL-06 17 79496268 79496268 C T FSCN2 Silent p.T237T 0.36 TCGA-D3-A8GL-06 17 8701409 8701409 G A MFSD6L Missense_Mutation p.P344S 0.83 tolerated(0.58) possibly_damaging(0.783) TCGA-D3-A8GL-06 17 9542028 9542028 G A WDR16 Silent p.K525K 0.88 TCGA-D3-A8GL-06 17 9578258 9578258 C T USP43 Missense_Mutation p.P264L 0.89 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 18 13056536 13056536 C T CEP192 Missense_Mutation p.S1316L 0.44 tolerated(0.08) benign(0.041) TCGA-D3-A8GL-06 18 14478299 14478299 C T CXADRP3 RNA 0.43 TCGA-D3-A8GL-06 18 28650751 28650751 C T DSC2 Missense_Mutation p.D731N 0.47 deleterious(0) possibly_damaging(0.896) TCGA-D3-A8GL-06 18 28671000 28671000 G A DSC2 Silent p.F155F 0.35 TCGA-D3-A8GL-06 18 28673553 28673553 G A DSC2 Silent p.S41S 0.44 TCGA-D3-A8GL-06 18 28711703 28711703 C T DSC1 Missense_Mutation p.E781K 0.41 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A8GL-06 18 28736078 28736078 C T DSC1 Silent p.K133K 0.43 TCGA-D3-A8GL-06 18 28742504 28742504 G A DSC1 Silent p.F18F 0.37 TCGA-D3-A8GL-06 18 28970705 28970705 G A DSG4 Missense_Mutation p.E202K 0.41 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GL-06 18 31251757 31251757 G A ASXL3 Missense_Mutation p.M214I 0.29 benign(0.071) TCGA-D3-A8GL-06 18 31319118 31319118 C T ASXL3 Missense_Mutation p.P584S 0.43 benign(0.026) TCGA-D3-A8GL-06 18 31324281 31324281 C A ASXL3 Missense_Mutation p.S1490Y 0.49 possibly_damaging(0.794) TCGA-D3-A8GL-06 18 3151753 3151753 G A MYOM1 Silent p.F594F 0.59 TCGA-D3-A8GL-06 18 34298363 34298363 C T FHOD3 Silent p.P859P 0.79 TCGA-D3-A8GL-06 18 34852990 34852990 G A CELF4 Missense_Mutation p.T313I 0.37 tolerated(0.14) probably_damaging(0.997) TCGA-D3-A8GL-06 18 43243761 43243761 G A SLC14A2 Missense_Mutation p.E455K 0.56 tolerated_low_confidence(0.11) benign(0.002) TCGA-D3-A8GL-06 18 44470598 44470598 T A PIAS2 Missense_Mutation p.L148F 0.46 tolerated(0.2) benign(0.049) TCGA-D3-A8GL-06 18 44595949 44595949 G A KATNAL2 Missense_Mutation p.G257E 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 18 47463705 47463705 C T MYO5B Silent p.G605G 0.40 TCGA-D3-A8GL-06 18 50936948 50936948 G A DCC Missense_Mutation p.R1021Q 0.52 deleterious(0.02) benign(0.358) TCGA-D3-A8GL-06 18 51013184 51013184 C T DCC Missense_Mutation p.P1252S 0.36 deleterious(0.04) possibly_damaging(0.897) TCGA-D3-A8GL-06 18 52544930 52544930 C T RAB27B Silent p.F38F 0.47 TCGA-D3-A8GL-06 18 52586528 52586528 G A CCDC68 Nonsense_Mutation p.Q255* 0.39 TCGA-D3-A8GL-06 18 59166638 59166638 C T CDH20 Nonsense_Mutation p.Q156* 0.37 TCGA-D3-A8GL-06 18 59167622 59167622 C A CDH20 Missense_Mutation p.S183Y 0.42 tolerated(0.19) probably_damaging(0.976) TCGA-D3-A8GL-06 18 59217256 59217256 A C CDH20 Missense_Mutation p.Q565P 0.48 deleterious(0.04) benign(0.268) TCGA-D3-A8GL-06 18 59483071 59483071 C T RNF152 3'UTR 0.43 TCGA-D3-A8GL-06 18 59966037 59966037 C T KIAA1468 Silent p.S1158S 0.46 TCGA-D3-A8GL-06 18 60384401 60384401 C T PHLPP1 Silent p.D495D 0.44 TCGA-D3-A8GL-06 18 61160414 61160414 C T SERPINB5 Intron 0.60 TCGA-D3-A8GL-06 18 61390342 61390342 G A SERPINB11 Silent p.E296E 0.32 TCGA-D3-A8GL-06 18 61562585 61562585 C T SERPINB2 Nonsense_Mutation p.Q86* 0.49 TCGA-D3-A8GL-06 18 6215784 6215784 G A L3MBTL4 Nonsense_Mutation p.Q279* 0.41 TCGA-D3-A8GL-06 18 6943241 6943241 C T LAMA1 Missense_Mutation p.S3002N 0.50 tolerated(0.36) benign(0.008) TCGA-D3-A8GL-06 18 70461395 70461395 G A NETO1 Missense_Mutation p.A199V 0.40 deleterious(0.03) probably_damaging(0.977) TCGA-D3-A8GL-06 18 7231695 7231695 G A LRRC30 Missense_Mutation p.E187K 0.52 tolerated(0.64) benign(0.05) TCGA-D3-A8GL-06 18 72352973 72352973 C T ZNF407 Missense_Mutation p.P1566L 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 18 77623889 77623889 C T KCNG2 Silent p.S74S 0.69 TCGA-D3-A8GL-06 18 8824750 8824750 C T SOGA2 Missense_Mutation p.P1081L 0.35 deleterious(0.05) probably_damaging(1) TCGA-D3-A8GL-06 18 9583166 9583166 C T PPP4R1 Silent p.R289R 0.40 TCGA-D3-A8GL-06 19 10227609 10227609 G A EIF3G Silent p.I154I 0.39 TCGA-D3-A8GL-06 19 1055315 1055315 C T ABCA7 Silent p.F1390F 0.25 TCGA-D3-A8GL-06 19 11169548 11169548 A C SMARCA4 Missense_Mutation p.N1540H 0.43 probably_damaging(0.996) TCGA-D3-A8GL-06 19 11527534 11527534 G A RGL3 Missense_Mutation p.P116L 0.38 tolerated(0.28) possibly_damaging(0.705) TCGA-D3-A8GL-06 19 11943429 11943429 C T ZNF440 Missense_Mutation p.H480Y 0.36 deleterious(0.02) benign(0.014) TCGA-D3-A8GL-06 19 12087904 12087904 G A ZNF763 Missense_Mutation p.A22T 0.46 tolerated(0.08) benign(0.001) TCGA-D3-A8GL-06 19 12738630 12738630 G C ZNF791 Missense_Mutation p.G96A 0.41 tolerated(0.08) benign(0.002) TCGA-D3-A8GL-06 19 12924222 12924222 C T RNASEH2A Missense_Mutation p.P281L 0.46 tolerated(0.27) benign(0) TCGA-D3-A8GL-06 19 12924223 12924223 C T RNASEH2A Silent p.P281P 0.46 TCGA-D3-A8GL-06 19 13988141 13988141 G A NANOS3 Missense_Mutation p.E27K 0.43 tolerated(0.25) benign(0.026) TCGA-D3-A8GL-06 19 14876485 14876485 C T EMR2 Missense_Mutation p.D256N 0.25 tolerated(1) benign(0) TCGA-D3-A8GL-06 19 15052846 15052846 C T OR7C2 Silent p.S182S 0.45 TCGA-D3-A8GL-06 19 15164655 15164655 G A CASP14 Missense_Mutation p.G97R 0.43 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 19 15538292 15538292 G A WIZ Silent p.F194F 0.55 TCGA-D3-A8GL-06 19 15730453 15730453 G A CYP4F8 RNA 0.52 TCGA-D3-A8GL-06 19 15733966 15733966 G A CYP4F8 RNA 0.51 TCGA-D3-A8GL-06 19 15997094 15997094 C T CYP4F2 Missense_Mutation p.D315N 0.44 deleterious(0.05) benign(0.232) TCGA-D3-A8GL-06 19 16905293 16905293 G A NWD1 Missense_Mutation p.R1078K 0.57 tolerated(0.29) benign(0.098) TCGA-D3-A8GL-06 19 17104378 17104378 C T CPAMD8 Missense_Mutation p.D419N 0.30 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GL-06 19 18092692 18092692 G A KCNN1 Missense_Mutation p.D225N 0.42 deleterious(0.05) benign(0.044) TCGA-D3-A8GL-06 19 18650393 18650393 C G FKBP8 Missense_Mutation p.V144L 0.47 deleterious(0.04) benign(0.048) TCGA-D3-A8GL-06 19 19137018 19137018 G A SUGP2 Missense_Mutation p.P47S 0.53 tolerated(0.06) benign(0.098) TCGA-D3-A8GL-06 19 19137019 19137019 G A SUGP2 Silent p.V46V 0.53 TCGA-D3-A8GL-06 19 19337426 19337426 C T NCAN Missense_Mutation p.P402S 0.38 tolerated(0.24) benign(0.194) TCGA-D3-A8GL-06 19 20216067 20216067 G A ZNF90 Silent p.L56L 0.24 TCGA-D3-A8GL-06 19 20828537 20828537 C T ZNF626 Missense_Mutation p.R60K 0.40 tolerated(1) benign(0) TCGA-D3-A8GL-06 19 22363511 22363511 G A ZNF676 Silent p.P336P 0.30 TCGA-D3-A8GL-06 19 22363528 22363528 G A ZNF676 Missense_Mutation p.H331Y 0.18 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GL-06 19 2254256 2254256 C T JSRP1 Silent p.K64K 0.43 TCGA-D3-A8GL-06 19 22585588 22585588 T A ZNF98 Intron 0.54 TCGA-D3-A8GL-06 19 22585660 22585660 T C ZNF98 Missense_Mutation p.I62V 0.43 tolerated(0.14) possibly_damaging(0.456) TCGA-D3-A8GL-06 19 22939282 22939282 C T ZNF99 3'Flank 0.38 TCGA-D3-A8GL-06 19 22940777 22940777 C T ZNF99 Missense_Mutation p.G645E 0.36 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GL-06 19 22952004 22952004 G A ZNF99 Silent p.F42F 0.33 TCGA-D3-A8GL-06 19 23159801 23159801 A - ZNF728 Frame_Shift_Del p.L113* 0.29 TCGA-D3-A8GL-06 19 2987029 2987029 G A TLE6 Missense_Mutation p.D112N 0.46 tolerated(0.49) benign(0.001) TCGA-D3-A8GL-06 19 31039788 31039788 C T ZNF536 Silent p.L1088L 0.40 TCGA-D3-A8GL-06 19 327930 327930 G A MIER2 Silent p.P101P 0.45 TCGA-D3-A8GL-06 19 33333196 33333196 G A SLC7A9 Missense_Mutation p.P368S 0.45 tolerated(0.1) probably_damaging(0.996) TCGA-D3-A8GL-06 19 35175836 35175836 C T ZNF302 Silent p.S298S 0.35 TCGA-D3-A8GL-06 19 35616213 35616213 C T LGI4 Missense_Mutation p.V500M 0.44 tolerated(0.11) benign(0.01) TCGA-D3-A8GL-06 19 35616214 35616214 C T LGI4 Silent p.L499L 0.44 TCGA-D3-A8GL-06 19 35836617 35836617 G A CD22 Missense_Mutation p.R774Q 0.48 tolerated(0.16) possibly_damaging(0.775) TCGA-D3-A8GL-06 19 35836618 35836618 A C CD22 Silent p.R774R 0.44 TCGA-D3-A8GL-06 19 36003556 36003556 G A DMKN Missense_Mutation p.P188L 0.46 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A8GL-06 19 36336325 36336325 G A NPHS1 Silent p.A625A 0.43 TCGA-D3-A8GL-06 19 36370047 36370047 C T APLP1 Silent p.S595S 0.52 TCGA-D3-A8GL-06 19 38028771 38028771 G A ZNF793 Missense_Mutation p.G404E 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GL-06 19 38230253 38230253 G A ZNF573 Missense_Mutation p.H380Y 0.40 deleterious(0) probably_damaging(0.925) TCGA-D3-A8GL-06 19 38968404 38968404 G A RYR1 Missense_Mutation p.G1450S 0.35 probably_damaging(1) TCGA-D3-A8GL-06 19 38987588 38987588 G A RYR1 Silent p.L2295L 0.29 TCGA-D3-A8GL-06 19 38987589 38987589 G A RYR1 Missense_Mutation p.E2296K 0.28 benign(0.108) TCGA-D3-A8GL-06 19 39127550 39127550 C T EIF3K Missense_Mutation p.S216F 0.48 deleterious(0.01) benign(0.006) TCGA-D3-A8GL-06 19 39409071 39409071 C T SARS2 Missense_Mutation p.G305R 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GL-06 19 39589706 39589706 G A PAPL Silent p.G143G 0.48 TCGA-D3-A8GL-06 19 39880738 39880738 C T PAF1 Silent p.K47K 0.48 TCGA-D3-A8GL-06 19 39915142 39915142 C T PLEKHG2 Silent p.I1123I 0.43 TCGA-D3-A8GL-06 19 40392389 40392389 G T FCGBP Missense_Mutation p.N2705K 0.28 benign(0.027) TCGA-D3-A8GL-06 19 40392572 40392572 G A FCGBP Silent p.P2644P 0.28 TCGA-D3-A8GL-06 19 40395979 40395979 C T FCGBP Missense_Mutation p.G2473D 0.22 probably_damaging(0.947) TCGA-D3-A8GL-06 19 40581354 40581354 G A ZNF780A Missense_Mutation p.P333L 0.47 deleterious(0.04) possibly_damaging(0.8) TCGA-D3-A8GL-06 19 41094590 41094590 C T SHKBP1 Missense_Mutation p.S466F 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 19 41630626 41630626 C T CYP2F1 Missense_Mutation p.R323C 0.39 deleterious(0) possibly_damaging(0.893) TCGA-D3-A8GL-06 19 42132257 42132257 C T CEACAM4 Missense_Mutation p.G48R 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 19 42133275 42133275 C T CEACAM4 Silent p.L19L 0.34 TCGA-D3-A8GL-06 19 4290474 4290474 C T SHD Silent p.F289F 0.40 TCGA-D3-A8GL-06 19 4290668 4290668 G A SHD 3'UTR 0.35 TCGA-D3-A8GL-06 19 43233308 43233308 C T PSG3 Missense_Mutation p.E404K 0.43 tolerated(0.26) possibly_damaging(0.685) TCGA-D3-A8GL-06 19 43257524 43257524 C T PSG8 3'Flank 0.41 TCGA-D3-A8GL-06 19 43262211 43262211 C T PSG8 Missense_Mutation p.E218K 0.45 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 19 43762446 43762446 A T PSG9 Missense_Mutation p.I384N 0.41 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GL-06 19 43766240 43766240 C T PSG9 Missense_Mutation p.A161T 0.42 tolerated(0.4) benign(0.03) TCGA-D3-A8GL-06 19 43965920 43965920 C A LYPD3 Silent p.G208G 0.45 TCGA-D3-A8GL-06 19 44377522 44377522 G A ZNF404 Missense_Mutation p.H282Y 0.51 tolerated(1) possibly_damaging(0.719) TCGA-D3-A8GL-06 19 44635974 44635974 G A ZNF225 Missense_Mutation p.E403K 0.44 tolerated(0.07) probably_damaging(0.932) TCGA-D3-A8GL-06 19 44933159 44933159 G A ZNF229 Silent p.P599P 0.49 TCGA-D3-A8GL-06 19 44934527 44934527 C T ZNF229 Nonsense_Mutation p.W143* 0.41 TCGA-D3-A8GL-06 19 44981754 44981754 G A ZNF180 Missense_Mutation p.S315F 0.43 deleterious(0.03) possibly_damaging(0.472) TCGA-D3-A8GL-06 19 45028125 45028125 G A CEACAM20 RNA 0.50 TCGA-D3-A8GL-06 19 45029212 45029212 C T CEACAM20 RNA 0.52 TCGA-D3-A8GL-06 19 45868358 45868358 G A ERCC2 Missense_Mutation p.S140F 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GL-06 19 46116930 46116930 C T EML2 Splice_Site p.X766_splice 0.38 TCGA-D3-A8GL-06 19 47824143 47824143 C T C5AR1 3'UTR 0.38 TCGA-D3-A8GL-06 19 4839201 4839201 C T PLIN3 3'UTR 0.33 TCGA-D3-A8GL-06 19 48790038 48790038 A C ZNF114 Missense_Mutation p.K386T 0.37 deleterious(0.01) possibly_damaging(0.758) TCGA-D3-A8GL-06 19 48925118 48925118 G A GRIN2D Missense_Mutation p.R723H 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GL-06 19 48925129 48925129 C T GRIN2D Missense_Mutation p.P727S 0.45 deleterious(0.03) probably_damaging(0.946) TCGA-D3-A8GL-06 19 49013313 49013313 G A LMTK3 Silent p.L139L 0.44 TCGA-D3-A8GL-06 19 4930857 4930857 G A MIR4747 5'Flank 0.39 TCGA-D3-A8GL-06 19 49536425 49536425 C T CGB2 Missense_Mutation p.P147S 0.53 tolerated_low_confidence(0.16) probably_damaging(0.986) TCGA-D3-A8GL-06 19 49793622 49793622 G A SLC6A16 Missense_Mutation p.P657S 0.40 tolerated(1) benign(0.004) TCGA-D3-A8GL-06 19 49937025 49937025 C T SLC17A7 Silent p.E275E 0.38 TCGA-D3-A8GL-06 19 50172278 50172278 C T BCL2L12 Intron 0.41 TCGA-D3-A8GL-06 19 50333775 50333775 G A MED25 Missense_Mutation p.G276E 0.55 deleterious(0.04) possibly_damaging(0.456) TCGA-D3-A8GL-06 19 51274841 51274841 C T GPR32 Silent p.F328F 0.11 TCGA-D3-A8GL-06 19 51767208 51767208 C T SIGLECL1 5'UTR 0.25 TCGA-D3-A8GL-06 19 52034762 52034762 G A SIGLEC6 Nonsense_Mutation p.Q27* 0.38 TCGA-D3-A8GL-06 19 52130912 52130912 G A SIGLEC5 Missense_Mutation p.S362F 0.36 tolerated(0.06) benign(0.395) TCGA-D3-A8GL-06 19 52220330 52220330 C T HAS1 Silent p.L273L 0.45 TCGA-D3-A8GL-06 19 52569868 52569868 G A ZNF841 Missense_Mutation p.H423Y 0.45 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GL-06 19 52580302 52580302 G A ZNF841 Silent p.F17F 0.41 TCGA-D3-A8GL-06 19 53431866 53431866 C A ZNF321P 3'UTR 0.31 TCGA-D3-A8GL-06 19 53611982 53611982 G A ZNF415 Missense_Mutation p.P439L 0.42 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A8GL-06 19 53619600 53619600 C T ZNF415 Silent p.V34V 0.46 TCGA-D3-A8GL-06 19 53668561 53668561 G A ZNF665 Silent p.I394I 0.43 TCGA-D3-A8GL-06 19 53770258 53770258 G A VN1R4 Missense_Mutation p.L221F 0.19 tolerated(0.09) benign(0.012) TCGA-D3-A8GL-06 19 54307214 54307214 C T NLRP12 Silent p.R859R 0.45 TCGA-D3-A8GL-06 19 54314064 54314064 G A NLRP12 Silent p.I283I 0.38 TCGA-D3-A8GL-06 19 54647226 54647226 C T CNOT3 Silent p.L48L 0.48 TCGA-D3-A8GL-06 19 54800104 54800104 C T LILRA3 Missense_Mutation p.G421E 0.50 tolerated(0.08) benign(0.049) TCGA-D3-A8GL-06 19 55264155 55264155 C A KIR2DL3 3'UTR 0.44 TCGA-D3-A8GL-06 19 55294988 55294988 G A KIR2DL1 Missense_Mutation p.E290K 0.49 deleterious(0) benign(0.107) TCGA-D3-A8GL-06 19 55363469 55363469 C T KIR3DL2 Silent p.P29P 0.40 TCGA-D3-A8GL-06 19 55452892 55452892 G A NLRP7 Missense_Mutation p.S63L 0.45 tolerated(0.23) benign(0.036) TCGA-D3-A8GL-06 19 55539004 55539004 G A GP6 Silent p.S184S 0.44 TCGA-D3-A8GL-06 19 55756738 55756738 G A PPP6R1 Silent p.F149F 0.47 TCGA-D3-A8GL-06 19 55857705 55857705 A C SUV420H2 Missense_Mutation p.H232P 0.49 tolerated(0.1) benign(0.057) TCGA-D3-A8GL-06 19 5587278 5587278 G A SAFB2 Silent p.Y946Y 0.53 TCGA-D3-A8GL-06 19 56249721 56249721 G A NLRP9 Missense_Mutation p.S7L 0.50 deleterious(0) possibly_damaging(0.883) TCGA-D3-A8GL-06 19 56249750 56249750 G A NLRP9 5'UTR 0.46 TCGA-D3-A8GL-06 19 56297226 56297226 G A NLRP11 Missense_Mutation p.T956I 0.46 tolerated(0.14) benign(0.094) TCGA-D3-A8GL-06 19 56369091 56369091 G A NLRP4 Nonsense_Mutation p.W111* 0.41 TCGA-D3-A8GL-06 19 56419164 56419164 T C NLRP13 Missense_Mutation p.Y814C 0.49 tolerated(0.14) benign(0.013) TCGA-D3-A8GL-06 19 56423488 56423488 C T NLRP13 Silent p.E565E 0.40 TCGA-D3-A8GL-06 19 56485065 56485065 C T NLRP8 Missense_Mutation p.S861F 0.45 tolerated(0.7) benign(0.008) TCGA-D3-A8GL-06 19 57286140 57286140 C T ZIM2 Silent p.G500G 0.48 TCGA-D3-A8GL-06 19 57325384 57325384 C T PEG3 Missense_Mutation p.E1476K 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GL-06 19 57325396 57325396 C T PEG3 Missense_Mutation p.A1472T 0.41 deleterious(0.03) possibly_damaging(0.521) TCGA-D3-A8GL-06 19 57326417 57326417 C T PEG3 Silent p.R1131R 0.61 TCGA-D3-A8GL-06 19 57334197 57334197 C T PEG3 Silent p.R163R 0.25 TCGA-D3-A8GL-06 19 57646468 57646468 G A ZIM3 Missense_Mutation p.H413Y 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GL-06 19 57665660 57665660 C T DUXA 3'UTR 0.36 TCGA-D3-A8GL-06 19 57985091 57985091 G A ZNF772 Nonsense_Mutation p.Q341* 0.44 TCGA-D3-A8GL-06 19 58578299 58578299 C T ZNF135 Silent p.F173F 0.33 TCGA-D3-A8GL-06 19 58600166 58600166 G A ZSCAN18 Missense_Mutation p.L204F 0.35 tolerated(0.89) benign(0.001) TCGA-D3-A8GL-06 19 58806304 58806304 C T ZNF8 Missense_Mutation p.S377F 0.50 deleterious(0) probably_damaging(0.944) TCGA-D3-A8GL-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.47 TCGA-D3-A8GL-06 19 6418824 6418824 G A KHSRP Silent p.F223F 0.41 TCGA-D3-A8GL-06 19 6442106 6442106 C T SLC25A23 Silent p.E429E 0.31 TCGA-D3-A8GL-06 19 6974532 6974532 T C EMR4P RNA 0.71 TCGA-D3-A8GL-06 19 7607939 7607939 C T PNPLA6 Missense_Mutation p.A535V 0.44 deleterious(0.03) benign(0.26) TCGA-D3-A8GL-06 19 7705601 7705601 G T STXBP2 Intron 0.37 TCGA-D3-A8GL-06 19 8953319 8953319 G A MBD3L1 Intron 0.44 TCGA-D3-A8GL-06 19 8953342 8953342 G A MBD3L1 5'UTR 0.46 TCGA-D3-A8GL-06 19 8953514 8953514 C A MBD3L1 Missense_Mutation p.Q54K 0.43 tolerated(0.22) benign(0.162) TCGA-D3-A8GL-06 19 8971776 8971776 C T MUC16 Silent p.L14272L 0.64 TCGA-D3-A8GL-06 19 9000207 9000207 G A MUC16 Missense_Mutation p.P13517L 0.42 probably_damaging(0.964) TCGA-D3-A8GL-06 19 9002500 9002500 C T MUC16 Splice_Site p.X13439_splice 0.21 TCGA-D3-A8GL-06 19 9009593 9009593 C G MUC16 Missense_Mutation p.G13045R 0.57 probably_damaging(0.976) TCGA-D3-A8GL-06 19 9009624 9009624 C T MUC16 Silent p.R13034R 0.40 TCGA-D3-A8GL-06 19 9014568 9014568 G A MUC16 Missense_Mutation p.P12803S 0.46 possibly_damaging(0.822) TCGA-D3-A8GL-06 19 9045604 9045604 C T MUC16 Silent p.G12009G 0.42 TCGA-D3-A8GL-06 19 9046941 9046941 A G MUC16 Silent p.L11564L 0.51 TCGA-D3-A8GL-06 19 9048441 9048441 G A MUC16 Missense_Mutation p.P11064S 0.45 benign(0.402) TCGA-D3-A8GL-06 19 9062888 9062888 G A MUC16 Silent p.L8186L 0.55 TCGA-D3-A8GL-06 19 9068506 9068506 C T MUC16 Missense_Mutation p.E6314K 0.46 unknown(0) TCGA-D3-A8GL-06 19 9075273 9075273 G A MUC16 Missense_Mutation p.S4058F 0.45 unknown(0) TCGA-D3-A8GL-06 19 9075320 9075320 C T MUC16 Silent p.A4042A 0.40 TCGA-D3-A8GL-06 19 9087764 9087764 C T MUC16 Missense_Mutation p.E1351K 0.39 unknown(0) TCGA-D3-A8GL-06 19 9088734 9088734 C T MUC16 Silent p.T1027T 0.49 TCGA-D3-A8GL-06 19 9091298 9091298 C T MUC16 Missense_Mutation p.G173S 0.51 unknown(0) TCGA-D3-A8GL-06 19 9236747 9236747 T A OR7G3 Missense_Mutation p.N294Y 0.59 deleterious(0) possibly_damaging(0.819) TCGA-D3-A8GL-06 19 9236751 9236751 C T OR7G3 Silent p.L292L 0.38 TCGA-D3-A8GL-06 19 9325391 9325391 C T OR7D4 Silent p.G41G 0.58 TCGA-D3-A8GL-06 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.50 tolerated(0.43) possibly_damaging(0.602) TCGA-D3-A8GL-06 19 9676942 9676942 G A ZNF121 Missense_Mutation p.P283S 0.50 tolerated(0.15) possibly_damaging(0.498) TCGA-D3-A8GL-06 19 9721591 9721591 C T ZNF561 Missense_Mutation p.G249E 0.38 tolerated(0.13) benign(0.279) TCGA-D3-A8GL-06 19 9800829 9800829 C T ZNF812 Missense_Mutation p.M450I 0.50 tolerated(0.73) possibly_damaging(0.577) TCGA-D3-A8GL-06 1 101427407 101427407 C T SLC30A7 Missense_Mutation p.S289F 0.45 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GL-06 1 104160035 104160035 G A AMY2A 5'UTR 0.41 TCGA-D3-A8GL-06 1 10713503 10713503 C T CASZ1 Missense_Mutation p.G871S 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GL-06 1 108138928 108138928 C T VAV3 Silent p.K752K 0.35 TCGA-D3-A8GL-06 1 109808440 109808440 C T CELSR2 Silent p.D1937D 0.47 TCGA-D3-A8GL-06 1 110465918 110465918 C G CSF1 Missense_Mutation p.D225E 0.54 tolerated(0.12) possibly_damaging(0.867) TCGA-D3-A8GL-06 1 111060225 111060225 A G KCNA10 Silent p.F395F 0.47 TCGA-D3-A8GL-06 1 11189000 11189000 G A MTOR Missense_Mutation p.T1908I 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 1 114340572 114340572 C T RSBN1 Missense_Mutation p.E264K 0.49 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-D3-A8GL-06 1 114340574 114340574 C T RSBN1 Missense_Mutation p.R263Q 0.49 deleterious_low_confidence(0.04) benign(0.104) TCGA-D3-A8GL-06 1 115142010 115142010 G A DENND2C Missense_Mutation p.T723I 0.46 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.52 tolerated(0.06) benign(0.006) TCGA-D3-A8GL-06 1 115520232 115520232 G A SYCP1 Missense_Mutation p.D793N 0.31 tolerated(0.24) benign(0.091) TCGA-D3-A8GL-06 1 115615589 115615589 G A TSPAN2 Missense_Mutation p.R37W 0.38 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 1 11580906 11580906 G A PTCHD2 Splice_Site p.X788_splice 0.60 TCGA-D3-A8GL-06 1 116563387 116563387 C T SLC22A15 Missense_Mutation p.P160L 0.48 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 1 117695914 117695914 G A VTCN1 Missense_Mutation p.P175S 0.37 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GL-06 1 118693218 118693218 G A SPAG17 Missense_Mutation p.S88L 0.31 tolerated(0.18) benign(0.006) TCGA-D3-A8GL-06 1 119923730 119923730 G A HAO2 Missense_Mutation p.D8N 0.45 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 1 120436973 120436973 C T ADAM30 Missense_Mutation p.E663K 0.40 tolerated(0.12) benign(0.025) TCGA-D3-A8GL-06 1 120437940 120437940 C T ADAM30 Silent p.L340L 0.42 TCGA-D3-A8GL-06 1 12337588 12337588 C T VPS13D Nonsense_Mutation p.R1315* 0.51 TCGA-D3-A8GL-06 1 12704696 12704696 G A AADACL4 Missense_Mutation p.R44K 0.51 deleterious(0.05) possibly_damaging(0.818) TCGA-D3-A8GL-06 1 12837357 12837357 A G PRAMEF12 Missense_Mutation p.E356G 0.46 deleterious(0.02) benign(0.075) TCGA-D3-A8GL-06 1 12837367 12837367 G A PRAMEF12 Silent p.G359G 0.46 TCGA-D3-A8GL-06 1 12837525 12837525 C T PRAMEF12 Missense_Mutation p.P412L 0.37 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 1 12854427 12854427 G A PRAMEF1 Nonsense_Mutation p.W217* 0.25 TCGA-D3-A8GL-06 1 12885199 12885199 G A PRAMEF11 Silent p.L304L 0.71 TCGA-D3-A8GL-06 1 12888366 12888366 A T PRAMEF11 Missense_Mutation p.V53D 0.39 tolerated(0.2) possibly_damaging(0.844) TCGA-D3-A8GL-06 1 12919737 12919737 C T PRAMEF2 Silent p.P159P 0.38 TCGA-D3-A8GL-06 1 144854629 144854629 C T PDE4DIP Missense_Mutation p.E2281K 0.05 tolerated(0.45) possibly_damaging(0.547) TCGA-D3-A8GL-06 1 145533523 145533523 G A ITGA10 Missense_Mutation p.G469E 0.32 tolerated(0.06) probably_damaging(0.988) TCGA-D3-A8GL-06 1 145561501 145561501 C T ANKRD35 Missense_Mutation p.P397S 0.24 tolerated(0.3) benign(0) TCGA-D3-A8GL-06 1 145561732 145561732 G A ANKRD35 Missense_Mutation p.E474K 0.27 deleterious(0.02) benign(0.007) TCGA-D3-A8GL-06 1 150599781 150599781 G A ENSA Intron 0.25 TCGA-D3-A8GL-06 1 150672652 150672652 C T HORMAD1 Missense_Mutation p.G347E 0.63 tolerated(0.64) benign(0.013) TCGA-D3-A8GL-06 1 151020670 151020670 G A C1orf56 Missense_Mutation p.G116E 0.39 tolerated(0.09) benign(0.037) TCGA-D3-A8GL-06 1 151020671 151020671 A T C1orf56 Silent p.G116G 0.39 TCGA-D3-A8GL-06 1 151079617 151079617 C T GABPB2 Missense_Mutation p.P281S 0.25 tolerated(0.14) benign(0.016) TCGA-D3-A8GL-06 1 152059036 152059036 G A TCHHL1 Silent p.V374V 0.29 TCGA-D3-A8GL-06 1 152059452 152059452 C T TCHHL1 Missense_Mutation p.D236N 0.49 tolerated(0.22) benign(0.147) TCGA-D3-A8GL-06 1 152059998 152059998 C T TCHHL1 Missense_Mutation p.E54K 0.33 tolerated(0.06) benign(0.221) TCGA-D3-A8GL-06 1 152080230 152080230 A T TCHH Nonsense_Mutation p.Y1821* 0.23 TCGA-D3-A8GL-06 1 152127432 152127432 C T RPTN Missense_Mutation p.D715N 0.26 deleterious(0.04) benign(0.367) TCGA-D3-A8GL-06 1 152128867 152128867 C T RPTN Silent p.Q236Q 0.51 TCGA-D3-A8GL-06 1 152275583 152275583 C T FLG Missense_Mutation p.E3927K 0.44 unknown(0) TCGA-D3-A8GL-06 1 152282330 152282330 C T FLG Missense_Mutation p.G1678R 0.19 probably_damaging(0.988) TCGA-D3-A8GL-06 1 152287821 152287821 C T FLG Missense_Mutation p.E38K 0.44 possibly_damaging(0.868) TCGA-D3-A8GL-06 1 152538629 152538629 G A LCE3E Missense_Mutation p.P19L 0.71 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GL-06 1 152552312 152552312 G A LCE3D Missense_Mutation p.S34F 0.23 tolerated_low_confidence(0.15) unknown(0) TCGA-D3-A8GL-06 1 152884062 152884062 G A IVL 3'UTR 0.29 TCGA-D3-A8GL-06 1 152944638 152944638 C T SPRR4 3'UTR 0.70 TCGA-D3-A8GL-06 1 152958038 152958038 C T SPRR1A 3'UTR 0.32 TCGA-D3-A8GL-06 1 153303081 153303081 G A PGLYRP4 3'UTR 0.40 TCGA-D3-A8GL-06 1 153409544 153409544 C T S100A7L2 Missense_Mutation p.G110E 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-D3-A8GL-06 1 153665927 153665927 C T NPR1 3'UTR 0.32 TCGA-D3-A8GL-06 1 15392258 15392258 C T KAZN Intron 0.31 TCGA-D3-A8GL-06 1 153924614 153924614 G A CRTC2 Missense_Mutation p.P293S 0.25 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GL-06 1 154544343 154544343 C T CHRNB2 Silent p.F348F 0.17 TCGA-D3-A8GL-06 1 154562788 154562788 G A ADAR Missense_Mutation p.R790C 0.74 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 155263028 155263028 G A PKLR Missense_Mutation p.A459V 0.49 deleterious(0.02) benign(0.432) TCGA-D3-A8GL-06 1 155448313 155448313 C T ASH1L Missense_Mutation p.E1450K 0.41 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-D3-A8GL-06 1 155701154 155701154 C T DAP3 Missense_Mutation p.P284L 0.19 deleterious(0) possibly_damaging(0.861) TCGA-D3-A8GL-06 1 156105868 156105868 G A LMNA Missense_Mutation p.M371I 0.18 deleterious(0.03) possibly_damaging(0.823) TCGA-D3-A8GL-06 1 156616744 156616744 C T BCAN Silent p.F81F 0.13 TCGA-D3-A8GL-06 1 156670672 156670672 G A CRABP2 Silent p.P81P 0.23 TCGA-D3-A8GL-06 1 156815458 156815458 G A INSRR Silent p.F709F 0.72 TCGA-D3-A8GL-06 1 156876145 156876145 G T PEAR1 Missense_Mutation p.D129Y 0.20 deleterious(0.03) possibly_damaging(0.793) TCGA-D3-A8GL-06 1 156921429 156921429 G A ARHGEF11 Missense_Mutation p.P621S 0.26 tolerated(0.24) possibly_damaging(0.596) TCGA-D3-A8GL-06 1 157567761 157567761 G A FCRL4 5'UTR 0.36 TCGA-D3-A8GL-06 1 157668415 157668415 C T FCRL3 Silent p.V19V 0.39 TCGA-D3-A8GL-06 1 157771877 157771877 G A FCRL1 Silent p.I238I 0.73 TCGA-D3-A8GL-06 1 158225796 158225796 C T CD1A Missense_Mutation p.P110S 0.19 deleterious(0.03) benign(0.1) TCGA-D3-A8GL-06 1 158301281 158301281 C T CD1B 5'UTR 0.47 TCGA-D3-A8GL-06 1 158326207 158326207 C T CD1E Intron 0.22 TCGA-D3-A8GL-06 1 158576360 158576360 C T OR10Z1 Silent p.F44F 0.45 TCGA-D3-A8GL-06 1 158576414 158576414 C T OR10Z1 Silent p.F62F 0.22 TCGA-D3-A8GL-06 1 158576694 158576694 G A OR10Z1 Missense_Mutation p.G156R 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 158576705 158576705 G A OR10Z1 Missense_Mutation p.M159I 0.45 tolerated(0.26) probably_damaging(0.983) TCGA-D3-A8GL-06 1 158576999 158576999 C T OR10Z1 Silent p.F257F 0.46 TCGA-D3-A8GL-06 1 158577149 158577149 G A OR10Z1 Silent p.G307G 0.75 TCGA-D3-A8GL-06 1 158583607 158583607 G A SPTA1 Missense_Mutation p.S2298F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 1 158585185 158585185 C T SPTA1 Silent p.Q2203Q 0.24 TCGA-D3-A8GL-06 1 158735578 158735578 C T OR6N1 Missense_Mutation p.E299K 0.40 tolerated(0.4) benign(0.005) TCGA-D3-A8GL-06 1 158735579 158735579 C T OR6N1 Silent p.K298K 0.40 TCGA-D3-A8GL-06 1 158943529 158943529 C T PYHIN1 Silent p.S484S 0.19 TCGA-D3-A8GL-06 1 159175753 159175753 G A DARC Missense_Mutation p.G177E 0.21 tolerated(0.08) possibly_damaging(0.888) TCGA-D3-A8GL-06 1 159683450 159683450 C T CRP Nonsense_Mutation p.W180* 0.22 TCGA-D3-A8GL-06 1 159683801 159683801 C T CRP Silent p.S63S 0.18 TCGA-D3-A8GL-06 1 159778081 159778081 G A FCRL6 Missense_Mutation p.G56R 0.19 tolerated(0.85) benign(0.302) TCGA-D3-A8GL-06 1 160143447 160143447 C T ATP1A4 Missense_Mutation p.T644I 0.20 deleterious(0.04) possibly_damaging(0.503) TCGA-D3-A8GL-06 1 160209632 160209632 G A DCAF8 Missense_Mutation p.T193I 0.27 tolerated(0.19) benign(0.009) TCGA-D3-A8GL-06 1 160465929 160465929 C T SLAMF6 Missense_Mutation p.E102K 0.22 tolerated(0.08) benign(0.145) TCGA-D3-A8GL-06 1 162325117 162325117 G A NOS1AP Missense_Mutation p.E246K 0.18 tolerated(0.33) benign(0.004) TCGA-D3-A8GL-06 1 16559111 16559111 A G RSG1 Missense_Mutation p.F141L 0.56 tolerated(0.16) benign(0.077) TCGA-D3-A8GL-06 1 166819323 166819323 C T POGK Missense_Mutation p.L503F 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GL-06 1 167663525 167663525 C T RCSD1 Missense_Mutation p.P154S 0.38 deleterious(0.01) probably_damaging(0.911) TCGA-D3-A8GL-06 1 168208380 168208380 C T SFT2D2 Missense_Mutation p.S142F 0.21 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GL-06 1 169697230 169697230 C T SELE Silent p.G416G 0.22 TCGA-D3-A8GL-06 1 17084453 17084453 G A MST1L RNA 0.25 TCGA-D3-A8GL-06 1 171250034 171250034 C T FMO1 Missense_Mutation p.S246F 0.18 tolerated(0.54) benign(0.01) TCGA-D3-A8GL-06 1 171753230 171753230 G A METTL13 Silent p.K168K 0.28 TCGA-D3-A8GL-06 1 171890901 171890901 C T DNM3 Nonsense_Mutation p.R59* 0.21 TCGA-D3-A8GL-06 1 172107935 172107935 T G DNM3 Intron 0.29 TCGA-D3-A8GL-06 1 17265535 17265535 C T CROCC Silent p.G502G 0.67 TCGA-D3-A8GL-06 1 17265536 17265536 C T CROCC Nonsense_Mutation p.R503* 0.67 TCGA-D3-A8GL-06 1 17323623 17323623 G A ATP13A2 Missense_Mutation p.P363S 0.36 tolerated(0.58) benign(0.024) TCGA-D3-A8GL-06 1 173470016 173470016 C T SLC9C2 3'UTR 0.38 TCGA-D3-A8GL-06 1 173486818 173486818 C T SLC9C2 Missense_Mutation p.G922E 0.24 deleterious(0) possibly_damaging(0.836) TCGA-D3-A8GL-06 1 173593965 173593965 C T ANKRD45 Missense_Mutation p.D231N 0.76 tolerated(0.05) benign(0.045) TCGA-D3-A8GL-06 1 173834012 173834012 T C ZBTB37 5'Flank 0.68 TCGA-D3-A8GL-06 1 173912702 173912702 G A RC3H1 Nonsense_Mutation p.Q1005* 0.77 TCGA-D3-A8GL-06 1 175113632 175113632 G A TNN Silent p.K1235K 0.18 TCGA-D3-A8GL-06 1 175331904 175331904 C T TNR Missense_Mutation p.E917K 0.49 tolerated(0.17) benign(0.042) TCGA-D3-A8GL-06 1 175335126 175335126 C T TNR Silent p.K734K 0.38 TCGA-D3-A8GL-06 1 176525476 176525476 C T PAPPA2 Silent p.I6I 0.74 TCGA-D3-A8GL-06 1 176525627 176525627 C T PAPPA2 Nonsense_Mutation p.R57* 0.23 TCGA-D3-A8GL-06 1 176526244 176526244 C T PAPPA2 Silent p.I262I 0.27 TCGA-D3-A8GL-06 1 176563723 176563723 G A PAPPA2 Missense_Mutation p.G328E 0.19 tolerated(0.3) possibly_damaging(0.624) TCGA-D3-A8GL-06 1 176681029 176681029 C T PAPPA2 Missense_Mutation p.P1237L 0.24 deleterious(0) probably_damaging(0.92) TCGA-D3-A8GL-06 1 176681058 176681058 G A PAPPA2 Missense_Mutation p.D1247N 0.26 tolerated(0.19) benign(0.007) TCGA-D3-A8GL-06 1 17668844 17668844 G A PADI4 Silent p.A294A 0.38 TCGA-D3-A8GL-06 1 176934347 176934347 C T ASTN1 Missense_Mutation p.R517Q 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GL-06 1 177242646 177242646 C T BRINP2 Missense_Mutation p.P231L 0.19 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 1 177249754 177249754 A G BRINP2 Missense_Mutation p.N481S 0.17 deleterious(0) benign(0.3) TCGA-D3-A8GL-06 1 178427285 178427285 C T RASAL2 Missense_Mutation p.S953F 0.45 tolerated(0.25) probably_damaging(0.998) TCGA-D3-A8GL-06 1 178483209 178483209 C T TEX35 Silent p.T29T 0.16 TCGA-D3-A8GL-06 1 179562990 179562990 G A TDRD5 Missense_Mutation p.G210R 0.22 tolerated(0.54) benign(0.02) TCGA-D3-A8GL-06 1 179609171 179609171 C T TDRD5 Missense_Mutation p.S573F 0.44 tolerated(0.22) possibly_damaging(0.908) TCGA-D3-A8GL-06 1 179609172 179609172 C T TDRD5 Silent p.S573S 0.45 TCGA-D3-A8GL-06 1 180000573 180000573 T C CEP350 Silent p.F1223F 0.24 TCGA-D3-A8GL-06 1 180957389 180957389 C A STX6 Silent p.L194L 0.28 TCGA-D3-A8GL-06 1 181057987 181057987 C T IER5 5'UTR 0.20 TCGA-D3-A8GL-06 1 181765888 181765888 C T CACNA1E Missense_Mutation p.S2098F 0.22 deleterious(0) possibly_damaging(0.828) TCGA-D3-A8GL-06 1 181767983 181767983 C T CACNA1E 3'UTR 0.44 TCGA-D3-A8GL-06 1 182617421 182617421 G A RGS8 Missense_Mutation p.R89C 0.24 deleterious(0) possibly_damaging(0.614) TCGA-D3-A8GL-06 1 185060819 185060819 G A RNF2 Missense_Mutation p.E66K 0.17 deleterious(0) possibly_damaging(0.502) TCGA-D3-A8GL-06 1 185951482 185951482 T A HMCN1 Missense_Mutation p.N917K 0.66 probably_damaging(0.996) TCGA-D3-A8GL-06 1 18807650 18807650 G A KLHDC7A Missense_Mutation p.E59K 0.44 deleterious(0.01) benign(0.106) TCGA-D3-A8GL-06 1 19029763 19029763 C T PAX7 Silent p.N376N 0.29 TCGA-D3-A8GL-06 1 19166824 19166824 G A TAS1R2 Missense_Mutation p.R597C 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 19430720 19430720 G A UBR4 Silent p.S4253S 0.55 TCGA-D3-A8GL-06 1 196205189 196205189 C T KCNT2 Missense_Mutation p.D1075N 0.20 tolerated(0.09) benign(0.115) TCGA-D3-A8GL-06 1 196398880 196398880 C T KCNT2 Missense_Mutation p.G216R 0.26 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 1 196438156 196438156 C T KCNT2 Missense_Mutation p.E143K 0.67 deleterious(0) probably_damaging(0.965) TCGA-D3-A8GL-06 1 196642261 196642261 G A CFH Nonsense_Mutation p.W71* 0.19 TCGA-D3-A8GL-06 1 196706079 196706079 G A CFH Missense_Mutation p.E847K 0.47 tolerated(0.21) benign(0.026) TCGA-D3-A8GL-06 1 196876147 196876147 C T CFHR4 Missense_Mutation p.S198F 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 1 197030191 197030191 G A F13B Missense_Mutation p.P156S 0.68 tolerated(0.05) probably_damaging(0.951) TCGA-D3-A8GL-06 1 197396697 197396697 C T CRB1 Missense_Mutation p.P748S 0.24 tolerated(0.51) benign(0.21) TCGA-D3-A8GL-06 1 197411450 197411450 C T CRB1 Intron 0.65 TCGA-D3-A8GL-06 1 198201759 198201759 C T NEK7 Nonsense_Mutation p.Q17* 0.14 TCGA-D3-A8GL-06 1 200817835 200817835 T A CAMSAP2 Missense_Mutation p.F646L 0.26 tolerated(0.7) benign(0.003) TCGA-D3-A8GL-06 1 201047107 201047107 C T CACNA1S Missense_Mutation p.G507S 0.35 tolerated(0.35) probably_damaging(0.992) TCGA-D3-A8GL-06 1 201252843 201252843 C T PKP1 Missense_Mutation p.P5S 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GL-06 1 201252844 201252844 C T PKP1 Missense_Mutation p.P5L 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GL-06 1 202121787 202121787 G A PTPN7 Missense_Mutation p.S358L 0.24 tolerated(0.08) probably_damaging(0.935) TCGA-D3-A8GL-06 1 20216999 20216999 G A OTUD3 Missense_Mutation p.E115K 0.42 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GL-06 1 206224461 206224461 G A AVPR1B Nonsense_Mutation p.W7* 0.73 TCGA-D3-A8GL-06 1 206626610 206626610 C T SRGAP2 Silent p.S662S 0.19 TCGA-D3-A8GL-06 1 207039318 207039318 G A IL20 Missense_Mutation p.E41K 0.19 tolerated(0.14) benign(0.034) TCGA-D3-A8GL-06 1 207095319 207095319 G A FAIM3 5'UTR 0.20 TCGA-D3-A8GL-06 1 207196595 207196595 G A C1orf116 Nonsense_Mutation p.Q172* 0.67 TCGA-D3-A8GL-06 1 207240844 207240844 G A PFKFB2 Silent p.K211K 0.43 TCGA-D3-A8GL-06 1 207646162 207646162 C T CR2 Missense_Mutation p.T539I 0.17 deleterious(0) benign(0.167) TCGA-D3-A8GL-06 1 207737255 207737255 G A CR1 Silent p.R1211R 0.32 TCGA-D3-A8GL-06 1 210273658 210273658 G A SYT14 Missense_Mutation p.G384E 0.27 tolerated(0.09) benign(0.037) TCGA-D3-A8GL-06 1 211093256 211093256 G A KCNH1 Silent p.I396I 0.15 TCGA-D3-A8GL-06 1 212911785 212911785 G A NSL1 Missense_Mutation p.P271S 0.27 deleterious(0.02) possibly_damaging(0.908) TCGA-D3-A8GL-06 1 213251131 213251131 C T RPS6KC1 Missense_Mutation p.P79S 0.73 deleterious(0.01) probably_damaging(0.966) TCGA-D3-A8GL-06 1 216498829 216498829 G A USH2A Missense_Mutation p.P321S 0.20 benign(0.262) TCGA-D3-A8GL-06 1 217793415 217793415 C A GPATCH2 Missense_Mutation p.R161S 0.66 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 1 22150605 22150605 G A LDLRAD2 3'UTR 0.25 TCGA-D3-A8GL-06 1 222712027 222712027 G A HHIPL2 Missense_Mutation p.L514F 0.20 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GL-06 1 223568474 223568474 G A C1orf65 Missense_Mutation p.E553K 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GL-06 1 228003822 228003822 C T PRSS38 Silent p.I60I 0.21 TCGA-D3-A8GL-06 1 228469693 228469705 TGCAGCTTTGAGT - OBSCN Frame_Shift_Del p.C3182Afs*104 0.14 TCGA-D3-A8GL-06 1 228480370 228480370 C T OBSCN Silent p.L4013L 0.27 TCGA-D3-A8GL-06 1 22974027 22974027 C T C1QC Silent p.P163P 0.53 TCGA-D3-A8GL-06 1 230841693 230841693 C T AGT Silent p.K370K 0.40 TCGA-D3-A8GL-06 1 233105696 233105696 C T NTPCR Silent p.I112I 0.23 TCGA-D3-A8GL-06 1 233518431 233518431 G A MLK4 Missense_Mutation p.E1029K 0.29 deleterious(0.03) benign(0.08) TCGA-D3-A8GL-06 1 234743582 234743582 C T IRF2BP2 Silent p.R355R 0.31 TCGA-D3-A8GL-06 1 235634257 235634257 G A B3GALNT2 Silent p.I223I 0.24 TCGA-D3-A8GL-06 1 235827786 235827786 C A LYST Missense_Mutation p.G3725V 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 1 237659956 237659956 T G RYR2 Missense_Mutation p.Y703D 0.33 probably_damaging(1) TCGA-D3-A8GL-06 1 237791205 237791205 C T RYR2 Missense_Mutation p.H2089Y 0.45 probably_damaging(0.942) TCGA-D3-A8GL-06 1 240071369 240071369 C T CHRM3 Silent p.F206F 0.70 TCGA-D3-A8GL-06 1 240255893 240255893 G A FMN2 Missense_Mutation p.D162N 0.68 unknown(0) TCGA-D3-A8GL-06 1 240286581 240286581 C A FMN2 Missense_Mutation p.P573H 0.23 unknown(0) TCGA-D3-A8GL-06 1 240370859 240370859 C T FMN2 Missense_Mutation p.P916L 0.23 unknown(0) TCGA-D3-A8GL-06 1 24123433 24123433 C T GALE Splice_Site p.X215_splice 0.53 TCGA-D3-A8GL-06 1 241667525 241667525 G A FH Missense_Mutation p.P309S 0.20 deleterious(0.01) benign(0.105) TCGA-D3-A8GL-06 1 243305647 243305647 G A CEP170 Missense_Mutation p.P1344S 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 1 244527998 244527998 C T C1orf100 5'UTR 0.25 TCGA-D3-A8GL-06 1 245850032 245850032 C T KIF26B Silent p.S1249S 0.14 TCGA-D3-A8GL-06 1 246797259 246797259 G A CNST Missense_Mutation p.R217Q 0.21 tolerated(0.07) benign(0.392) TCGA-D3-A8GL-06 1 247150934 247150934 G A ZNF695 Missense_Mutation p.P295S 0.20 deleterious(0.02) benign(0.105) TCGA-D3-A8GL-06 1 247587636 247587636 C T NLRP3 Silent p.I297I 0.54 TCGA-D3-A8GL-06 1 247587996 247587996 C T NLRP3 Silent p.I417I 0.25 TCGA-D3-A8GL-06 1 247588745 247588745 C T NLRP3 Missense_Mutation p.S667F 0.28 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GL-06 1 247875599 247875599 G A OR6F1 Silent p.F153F 0.40 TCGA-D3-A8GL-06 1 247920818 247920818 C T OR1C1 Missense_Mutation p.M297I 0.20 tolerated(0.26) benign(0.024) TCGA-D3-A8GL-06 1 247921392 247921392 G A OR1C1 Missense_Mutation p.S106F 0.43 tolerated(0.76) benign(0.198) TCGA-D3-A8GL-06 1 248039497 248039497 G A TRIM58 Silent p.G389G 0.44 TCGA-D3-A8GL-06 1 248059752 248059752 C T OR2W3 Silent p.L288L 0.54 TCGA-D3-A8GL-06 1 248084457 248084457 G A OR2T8 Silent p.L46L 0.21 TCGA-D3-A8GL-06 1 248128965 248128965 G A OR2AK2 Missense_Mutation p.G111D 0.21 deleterious(0.03) benign(0.216) TCGA-D3-A8GL-06 1 248129145 248129145 C T OR2AK2 Missense_Mutation p.A171V 0.25 deleterious(0.01) possibly_damaging(0.791) TCGA-D3-A8GL-06 1 248202216 248202216 C T OR2L2 Missense_Mutation p.S216F 0.44 deleterious(0) possibly_damaging(0.816) TCGA-D3-A8GL-06 1 248263173 248263173 C T OR2L13 Missense_Mutation p.P166S 0.23 tolerated(0.1) benign(0.219) TCGA-D3-A8GL-06 1 248344313 248344313 G A OR2M2 Silent p.L342L 0.26 TCGA-D3-A8GL-06 1 248652137 248652137 C T OR2T5 Missense_Mutation p.P83L 0.44 deleterious(0) probably_damaging(0.931) TCGA-D3-A8GL-06 1 248685511 248685511 C T OR2G6 Silent p.A188A 0.72 TCGA-D3-A8GL-06 1 248722545 248722545 G A OR2T29 Missense_Mutation p.P83L 0.17 deleterious(0) probably_damaging(0.931) TCGA-D3-A8GL-06 1 248844765 248844765 G A OR14I1 Missense_Mutation p.P281S 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GL-06 1 249212359 249212359 G A PGBD2 Missense_Mutation p.E526K 0.29 tolerated(0.11) benign(0.326) TCGA-D3-A8GL-06 1 26650706 26650706 G A AIM1L Silent p.V684V 0.62 TCGA-D3-A8GL-06 1 27720611 27720611 C T GPR3 Silent p.I103I 0.49 TCGA-D3-A8GL-06 1 28203146 28203146 G T THEMIS2 Missense_Mutation p.D48Y 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 28600013 28600013 C T SESN2 Missense_Mutation p.P299S 0.53 tolerated(0.33) possibly_damaging(0.541) TCGA-D3-A8GL-06 1 28600014 28600014 C T SESN2 Missense_Mutation p.P299L 0.56 deleterious(0.05) probably_damaging(0.942) TCGA-D3-A8GL-06 1 32740399 32740399 C T LCK Missense_Mutation p.P56L 0.55 deleterious(0.04) possibly_damaging(0.864) TCGA-D3-A8GL-06 1 33058535 33058535 G A ZBTB8A Translation_Start_Site p.M1? 0.49 probably_damaging(0.991) TCGA-D3-A8GL-06 1 3319360 3319360 C T PRDM16 Missense_Mutation p.P228S 0.82 tolerated(0.52) benign(0.007) TCGA-D3-A8GL-06 1 33480169 33480169 G A AK2 Missense_Mutation p.S151F 0.48 deleterious(0) benign(0.089) TCGA-D3-A8GL-06 1 33797059 33797059 G A PHC2 Silent p.S631S 0.47 TCGA-D3-A8GL-06 1 34102044 34102044 C T CSMD2 Missense_Mutation p.E1589K 0.25 tolerated(0.98) benign(0.007) TCGA-D3-A8GL-06 1 34330214 34330214 C T HMGB4 Missense_Mutation p.P141L 0.57 tolerated(0.05) benign(0.099) TCGA-D3-A8GL-06 1 34684362 34684362 G A C1orf94 Silent p.%3D 0.30 TCGA-D3-A8GL-06 1 35370412 35370412 C T DLGAP3 Silent p.G191G 0.44 TCGA-D3-A8GL-06 1 35476129 35476129 T C ZMYM6 Missense_Mutation p.M471V 0.39 tolerated(0.22) benign(0.338) TCGA-D3-A8GL-06 1 37356558 37356558 C T GRIK3 Silent p.R85R 0.37 TCGA-D3-A8GL-06 1 39381308 39381308 C T RHBDL2 Silent p.E107E 0.47 TCGA-D3-A8GL-06 1 40126797 40126797 C T NT5C1A Missense_Mutation p.R232Q 0.59 tolerated(0.3) benign(0.166) TCGA-D3-A8GL-06 1 41540970 41540970 G A SCMH1 Missense_Mutation p.S290F 0.45 deleterious(0.05) benign(0.158) TCGA-D3-A8GL-06 1 42645433 42645433 G A FOXJ3 Missense_Mutation p.S606F 0.41 tolerated(0.5) benign(0.018) TCGA-D3-A8GL-06 1 43748622 43748622 C T C1orf210 Missense_Mutation p.R59Q 0.46 tolerated(0.19) benign(0.003) TCGA-D3-A8GL-06 1 43778111 43778111 G A TIE1 Missense_Mutation p.R589Q 0.55 tolerated(0.45) benign(0.009) TCGA-D3-A8GL-06 1 43893786 43893786 C T SZT2 Missense_Mutation p.R1249C 0.44 deleterious(0.02) probably_damaging(0.978) TCGA-D3-A8GL-06 1 43908164 43908164 C T SZT2 Nonsense_Mutation p.R2619* 0.42 TCGA-D3-A8GL-06 1 44438094 44438094 C T DPH2 Silent p.F451F 0.42 TCGA-D3-A8GL-06 1 45213086 45213086 C T KIF2C Missense_Mutation p.P66S 0.44 deleterious(0.04) possibly_damaging(0.468) TCGA-D3-A8GL-06 1 47024221 47024221 G A MKNK1 3'UTR 0.56 TCGA-D3-A8GL-06 1 47282818 47282818 C T CYP4B1 Missense_Mutation p.P391L 0.33 deleterious(0) possibly_damaging(0.624) TCGA-D3-A8GL-06 1 47283644 47283644 G A CYP4B1 Silent p.L405L 0.44 TCGA-D3-A8GL-06 1 47348622 47348622 G A CYP4Z2P RNA 0.28 TCGA-D3-A8GL-06 1 47399870 47399870 C T CYP4A11 Missense_Mutation p.G356S 0.45 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GL-06 1 47501734 47501734 C T CYP4X1 Silent p.I222I 0.41 TCGA-D3-A8GL-06 1 48877142 48877142 G A SPATA6 Silent p.G133G 0.42 TCGA-D3-A8GL-06 1 51436024 51436024 C T CDKN2C Intron 0.48 TCGA-D3-A8GL-06 1 53553635 53553635 G A SLC1A7 3'UTR 0.33 TCGA-D3-A8GL-06 1 55266570 55266570 G A TTC22 Silent p.F89F 0.35 TCGA-D3-A8GL-06 1 55337081 55337081 G A DHCR24 Missense_Mutation p.S273F 0.56 deleterious(0) possibly_damaging(0.832) TCGA-D3-A8GL-06 1 55603270 55603270 G A USP24 Missense_Mutation p.P1040L 0.62 deleterious(0.01) possibly_damaging(0.784) TCGA-D3-A8GL-06 1 57351825 57351825 A T C8A Nonsense_Mutation p.K361* 0.39 TCGA-D3-A8GL-06 1 57383274 57383274 C T C8A Missense_Mutation p.S547F 0.59 deleterious(0.05) probably_damaging(0.964) TCGA-D3-A8GL-06 1 59041810 59041810 G A TACSTD2 3'UTR 0.55 TCGA-D3-A8GL-06 1 62675593 62675593 G A L1TD1 Missense_Mutation p.E383K 0.43 tolerated(0.19) unknown(0) TCGA-D3-A8GL-06 1 6313786 6313786 G A GPR153 Missense_Mutation p.P260S 0.77 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 64474974 64474974 C T ROR1 Intron 0.41 TCGA-D3-A8GL-06 1 64643321 64643321 C T ROR1 Missense_Mutation p.P533S 0.44 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GL-06 1 6589229 6589229 G A NOL9 Silent p.V550V 0.75 TCGA-D3-A8GL-06 1 67469996 67469996 T C SLC35D1 3'UTR 0.35 TCGA-D3-A8GL-06 1 68912514 68912514 G A RPE65 Missense_Mutation p.L42F 0.45 tolerated(0.25) probably_damaging(1) TCGA-D3-A8GL-06 1 72058624 72058624 A T NEGR1 Silent p.I272I 0.47 TCGA-D3-A8GL-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.37 tolerated(0.27) benign(0.035) TCGA-D3-A8GL-06 1 75072338 75072338 C T C1orf173 Missense_Mutation p.G479E 0.48 tolerated(0.29) benign(0.126) TCGA-D3-A8GL-06 1 75679675 75679675 C T SLC44A5 Splice_Site p.X601_splice 0.44 TCGA-D3-A8GL-06 1 75684294 75684294 G A SLC44A5 Silent p.F470F 0.45 TCGA-D3-A8GL-06 1 75707722 75707722 C G SLC44A5 Missense_Mutation p.D166H 0.41 deleterious(0.02) possibly_damaging(0.491) TCGA-D3-A8GL-06 1 75862280 75862280 C T SLC44A5 Missense_Mutation p.E14K 0.40 tolerated(0.39) benign(0) TCGA-D3-A8GL-06 1 77509921 77509921 G A ST6GALNAC5 Silent p.L98L 0.54 TCGA-D3-A8GL-06 1 77510067 77510067 C T ST6GALNAC5 Missense_Mutation p.S147F 0.46 probably_damaging(1) TCGA-D3-A8GL-06 1 78392447 78392447 G A NEXN Missense_Mutation p.G245E 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 1 79002449 79002449 C T PTGFR 3'UTR 0.44 TCGA-D3-A8GL-06 1 7913470 7913470 G A UTS2 Missense_Mutation p.L8F 0.44 deleterious_low_confidence(0.02) benign(0.006) TCGA-D3-A8GL-06 1 86891022 86891022 G A CLCA2 Missense_Mutation p.E63K 0.40 deleterious(0.04) benign(0.086) TCGA-D3-A8GL-06 1 89453983 89453983 G A CCBL2 Silent p.F17F 0.53 TCGA-D3-A8GL-06 1 90048573 90048573 C T LRRC8B Missense_Mutation p.P122S 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GL-06 1 92508477 92508477 C T EPHX4 Nonsense_Mutation p.R139* 0.34 TCGA-D3-A8GL-06 1 94526312 94526312 G A ABCA4 Silent p.F647F 0.45 TCGA-D3-A8GL-06 1 94586569 94586569 G A ABCA4 Silent p.L11L 0.47 TCGA-D3-A8GL-06 1 94654395 94654395 G A ARHGAP29 Missense_Mutation p.P560L 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GL-06 1 94670754 94670754 C T ARHGAP29 Missense_Mutation p.G187E 0.48 deleterious(0.03) probably_damaging(0.949) TCGA-D3-A8GL-06 1 9776596 9776596 G A PIK3CD Silent p.V233V 0.42 TCGA-D3-A8GL-06 1 98039508 98039508 C T DPYD Missense_Mutation p.E383K 0.67 deleterious(0.03) benign(0.289) TCGA-D3-A8GL-06 1 99771283 99771283 A G LPPR4 Missense_Mutation p.M337V 0.47 tolerated(0.72) benign(0.001) TCGA-D3-A8GL-06 20 15480430 15480430 G A MACROD2 Missense_Mutation p.E195K 0.43 tolerated(0.07) probably_damaging(0.989) TCGA-D3-A8GL-06 20 16021856 16021856 G A MACROD2 Silent p.E388E 0.42 TCGA-D3-A8GL-06 20 17639691 17639691 G A RRBP1 Intron 0.36 TCGA-D3-A8GL-06 20 17639692 17639692 G A RRBP1 Intron 0.36 TCGA-D3-A8GL-06 20 1960825 1960825 G A PDYN 3'UTR 0.61 TCGA-D3-A8GL-06 20 1960827 1960827 G A PDYN 3'UTR 0.60 TCGA-D3-A8GL-06 20 1961496 1961496 C T PDYN Missense_Mutation p.E80K 0.44 tolerated(0.24) benign(0.021) TCGA-D3-A8GL-06 20 19955873 19955873 G A RIN2 Missense_Mutation p.E451K 0.44 tolerated(0.38) benign(0.045) TCGA-D3-A8GL-06 20 23065978 23065978 G A CD93 Silent p.L284L 0.47 TCGA-D3-A8GL-06 20 2308766 2308766 G A TGM3 Missense_Mutation p.G363E 0.41 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 20 2444527 2444527 G A SNRPB Missense_Mutation p.P96S 0.49 tolerated(0.12) probably_damaging(0.994) TCGA-D3-A8GL-06 20 25188026 25188026 C T ENTPD6 Silent p.P123P 0.25 TCGA-D3-A8GL-06 20 25457032 25457032 G C NINL Silent p.A965A 0.36 TCGA-D3-A8GL-06 20 3016228 3016228 C T PTPRA Intron 0.48 TCGA-D3-A8GL-06 20 31647785 31647785 C T BPIFB3 Missense_Mutation p.L159F 0.30 tolerated(0.12) probably_damaging(1) TCGA-D3-A8GL-06 20 31652501 31652501 C T BPIFB3 Silent p.I258I 0.68 TCGA-D3-A8GL-06 20 31890880 31890880 C T BPIFB1 Silent p.I380I 0.65 TCGA-D3-A8GL-06 20 33297302 33297302 C T TP53INP2 Silent p.A129A 0.21 TCGA-D3-A8GL-06 20 33297303 33297303 C T TP53INP2 Silent p.L130L 0.21 TCGA-D3-A8GL-06 20 33580959 33580959 G A MYH7B Silent p.R788R 0.25 TCGA-D3-A8GL-06 20 33586648 33586648 G A MYH7B Missense_Mutation p.E1416K 0.62 benign(0.399) TCGA-D3-A8GL-06 20 33588849 33588849 G A MYH7B Missense_Mutation p.R1830Q 0.66 possibly_damaging(0.496) TCGA-D3-A8GL-06 20 34785955 34785955 G A EPB41L1 Missense_Mutation p.A554T 0.67 tolerated(0.14) benign(0.184) TCGA-D3-A8GL-06 20 35269681 35269681 C T SLA2 Missense_Mutation p.V20I 0.23 tolerated(0.24) benign(0.199) TCGA-D3-A8GL-06 20 35269682 35269682 A G SLA2 Silent p.S19S 0.23 TCGA-D3-A8GL-06 20 35381273 35381273 G A DSN1 Missense_Mutation p.P330L 0.57 tolerated(0.2) benign(0.077) TCGA-D3-A8GL-06 20 35812599 35812599 C T RPN2 Silent p.F10F 0.38 TCGA-D3-A8GL-06 20 36488677 36488677 C T CTNNBL1 Missense_Mutation p.R512C 0.26 deleterious(0) benign(0.427) TCGA-D3-A8GL-06 20 3677382 3677382 G A SIGLEC1 Missense_Mutation p.P845L 0.40 deleterious(0.05) benign(0.033) TCGA-D3-A8GL-06 20 36776394 36776394 G A TGM2 Missense_Mutation p.P217L 0.67 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 20 377390 377390 C T TRIB3 3'UTR 0.59 TCGA-D3-A8GL-06 20 3891445 3891445 C T PANK2 Silent p.S401S 0.42 TCGA-D3-A8GL-06 20 39831924 39831924 G A ZHX3 Missense_Mutation p.R545C 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 20 41306568 41306568 C T PTPRT Missense_Mutation p.R364Q 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 20 43052703 43052703 C T HNF4A Missense_Mutation p.S313F 0.67 tolerated(0.93) benign(0.141) TCGA-D3-A8GL-06 20 43108645 43108645 C T TTPAL Silent p.S2S 0.32 TCGA-D3-A8GL-06 20 43837176 43837176 G A SEMG1 Missense_Mutation p.R413K 0.34 tolerated(0.72) benign(0.016) TCGA-D3-A8GL-06 20 44236736 44236736 C T WFDC9 3'UTR 0.62 TCGA-D3-A8GL-06 20 44313349 44313349 G A WFDC10B 3'UTR 0.42 TCGA-D3-A8GL-06 20 44314548 44314548 C T WFDC10B Intron 0.68 TCGA-D3-A8GL-06 20 44828068 44828068 C T CDH22 Missense_Mutation p.E473K 0.25 tolerated(0.12) possibly_damaging(0.492) TCGA-D3-A8GL-06 20 45194972 45194972 G A SLC13A3 Missense_Mutation p.P464S 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GL-06 20 45194973 45194973 G A SLC13A3 Silent p.P463P 0.29 TCGA-D3-A8GL-06 20 45725732 45725732 C T EYA2 Silent p.F271F 0.62 TCGA-D3-A8GL-06 20 47991509 47991509 G A KCNB1 Silent p.I196I 0.60 TCGA-D3-A8GL-06 20 50808208 50808208 G A ZFP64 5'UTR 0.58 TCGA-D3-A8GL-06 20 51871128 51871128 C T TSHZ2 Silent p.S377S 0.33 TCGA-D3-A8GL-06 20 51871273 51871273 G A TSHZ2 Missense_Mutation p.V426M 0.63 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A8GL-06 20 51871407 51871407 G A TSHZ2 Silent p.E470E 0.60 TCGA-D3-A8GL-06 20 53208205 53208205 G A DOK5 Missense_Mutation p.E154K 0.37 deleterious(0.01) possibly_damaging(0.645) TCGA-D3-A8GL-06 20 54823832 54823832 C T MC3R 5'UTR 0.26 TCGA-D3-A8GL-06 20 54824193 54824193 C T MC3R Silent p.I98I 0.32 TCGA-D3-A8GL-06 20 55108615 55108615 T C FAM209B Missense_Mutation p.L73P 0.28 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 20 55803436 55803436 G A BMP7 Nonsense_Mutation p.R154* 0.32 TCGA-D3-A8GL-06 20 56136651 56136651 G A PCK1 Missense_Mutation p.E62K 0.59 tolerated(0.56) benign(0.001) TCGA-D3-A8GL-06 20 57766724 57766724 G A ZNF831 Missense_Mutation p.G217E 0.36 deleterious(0.01) probably_damaging(0.922) TCGA-D3-A8GL-06 20 57829769 57829769 G A ZNF831 Missense_Mutation p.D1669N 0.23 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 20 5897010 5897010 G A CHGB Missense_Mutation p.E30K 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 20 6022339 6022339 C T LRRN4 Missense_Mutation p.E518K 0.40 tolerated(0.67) benign(0.002) TCGA-D3-A8GL-06 20 60499519 60499519 C T CDH4 Silent p.L586L 0.78 TCGA-D3-A8GL-06 20 6065839 6065839 G A FERMT1 Silent p.I489I 0.45 TCGA-D3-A8GL-06 20 6091000 6091000 G A FERMT1 Missense_Mutation p.L231F 0.42 tolerated(0.15) probably_damaging(0.948) TCGA-D3-A8GL-06 20 61167968 61167968 C T C20orf166 3'UTR 0.54 TCGA-D3-A8GL-06 20 61511484 61511484 G A DIDO1 Missense_Mutation p.P1942S 0.67 probably_damaging(0.996) TCGA-D3-A8GL-06 20 61598184 61598184 C T SLC17A9 Intron 0.40 TCGA-D3-A8GL-06 20 62196325 62196325 G A HELZ2 Missense_Mutation p.R1284W 0.67 deleterious(0.01) benign(0.167) TCGA-D3-A8GL-06 20 62614469 62614469 C T PRPF6 Silent p.R47R 0.35 TCGA-D3-A8GL-06 20 62831251 62831251 C A MYT1 Missense_Mutation p.P21Q 0.57 benign(0.004) TCGA-D3-A8GL-06 20 9319602 9319602 G A PLCB4 Missense_Mutation p.R96Q 0.40 deleterious(0.03) possibly_damaging(0.612) TCGA-D3-A8GL-06 20 9346151 9346151 C T PLCB4 Missense_Mutation p.P165S 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-D3-A8GL-06 20 9382163 9382163 G A PLCB4 Missense_Mutation p.E513K 0.42 tolerated(0.13) benign(0.08) TCGA-D3-A8GL-06 20 9391729 9391729 C T PLCB4 Missense_Mutation p.S670L 0.39 tolerated(0.16) benign(0.422) TCGA-D3-A8GL-06 20 9404510 9404510 C T PLCB4 Missense_Mutation p.S800F 0.55 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 21 10862643 10862643 C T IGHV1OR21-1 Silent p.L8L 0.16 TCGA-D3-A8GL-06 21 10933880 10933880 G A TPTE Silent p.I333I 0.17 TCGA-D3-A8GL-06 21 10951396 10951396 C T TPTE Missense_Mutation p.V106I 0.19 tolerated(0.91) benign(0.026) TCGA-D3-A8GL-06 21 14983063 14983063 G A POTED Missense_Mutation p.E172K 0.85 tolerated(1) benign(0.004) TCGA-D3-A8GL-06 21 19642264 19642264 C T TMPRSS15 3'UTR 0.40 TCGA-D3-A8GL-06 21 19715865 19715865 C T TMPRSS15 Nonsense_Mutation p.W462* 0.37 TCGA-D3-A8GL-06 21 27840727 27840727 C T CYYR1 3'UTR 0.48 TCGA-D3-A8GL-06 21 28338164 28338164 C T ADAMTS5 Missense_Mutation p.G183R 0.25 tolerated(0.17) benign(0.032) TCGA-D3-A8GL-06 21 30521537 30521537 C T MAP3K7CL Missense_Mutation p.P133L 0.44 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GL-06 21 30909544 30909544 C T GRIK1 3'UTR 0.33 TCGA-D3-A8GL-06 21 31045476 31045476 G A GRIK1 Missense_Mutation p.R185C 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 21 33060763 33060763 G A SCAF4 Missense_Mutation p.P634S 0.42 benign(0.157) TCGA-D3-A8GL-06 21 33641319 33641319 G A MIS18A 3'UTR 0.49 TCGA-D3-A8GL-06 21 34924296 34924296 C T SON Missense_Mutation p.P920L 0.43 possibly_damaging(0.713) TCGA-D3-A8GL-06 21 35890265 35890265 G A RCAN1 3'UTR 0.24 TCGA-D3-A8GL-06 21 37617850 37617850 C T DOPEY2 Missense_Mutation p.S1191L 0.53 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GL-06 21 37833526 37833526 C T CLDN14 Missense_Mutation p.M156I 0.34 deleterious(0.03) possibly_damaging(0.622) TCGA-D3-A8GL-06 21 39086776 39086776 C T KCNJ6 Silent p.R228R 0.58 TCGA-D3-A8GL-06 21 39755450 39755450 G A ERG Missense_Mutation p.P446S 0.33 tolerated(0.06) benign(0.222) TCGA-D3-A8GL-06 21 40795222 40795222 G A LCA5L Nonsense_Mutation p.Q173* 0.45 TCGA-D3-A8GL-06 21 41450887 41450887 C T DSCAM Missense_Mutation p.E1480K 0.37 tolerated(0.07) possibly_damaging(0.497) TCGA-D3-A8GL-06 21 42824736 42824736 C T MX1 Silent p.S566S 0.46 TCGA-D3-A8GL-06 21 43802178 43802178 G A TMPRSS3 Silent p.F316F 0.46 TCGA-D3-A8GL-06 21 45959258 45959258 T C KRTAP10-1 Missense_Mutation p.Q259R 0.33 tolerated(0.06) unknown(0) TCGA-D3-A8GL-06 21 45987677 45987677 G A TSPEAR Missense_Mutation p.P99S 0.43 tolerated(0.11) possibly_damaging(0.521) TCGA-D3-A8GL-06 21 46020799 46020799 C T KRTAP10-7 Missense_Mutation p.S93L 0.32 tolerated(0.14) unknown(0) TCGA-D3-A8GL-06 21 46032637 46032637 C T KRTAP10-8 Missense_Mutation p.S207F 0.48 deleterious(0.02) unknown(0) TCGA-D3-A8GL-06 21 47320939 47320939 G A PCBP3 Missense_Mutation p.G84E 0.41 deleterious(0.01) probably_damaging(0.939) TCGA-D3-A8GL-06 21 47841917 47841917 C T PCNT Missense_Mutation p.P2353L 0.38 benign(0) TCGA-D3-A8GL-06 22 17072808 17072808 C T CCT8L2 Silent p.G211G 0.36 TCGA-D3-A8GL-06 22 17072809 17072809 C T CCT8L2 Missense_Mutation p.G211E 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A8GL-06 22 19028577 19028577 G A DGCR2 Missense_Mutation p.P464S 0.41 tolerated(0.23) benign(0.019) TCGA-D3-A8GL-06 22 19839156 19839156 G A C22orf29 Missense_Mutation p.P210L 0.48 tolerated(0.09) probably_damaging(0.947) TCGA-D3-A8GL-06 22 19839157 19839157 G A C22orf29 Missense_Mutation p.P210S 0.46 tolerated(0.12) possibly_damaging(0.887) TCGA-D3-A8GL-06 22 21800359 21800359 C T HIC2 Missense_Mutation p.P392L 0.41 deleterious(0.02) benign(0.043) TCGA-D3-A8GL-06 22 21800360 21800360 C T HIC2 Silent p.P392P 0.39 TCGA-D3-A8GL-06 22 22550488 22550488 G A IGLV6-57 Nonsense_Mutation p.W55* 0.57 TCGA-D3-A8GL-06 22 22989341 22989341 C T GGTLC2 Silent p.F98F 0.43 TCGA-D3-A8GL-06 22 23047190 23047190 C T IGLV3-22 Silent p.I76I 0.50 TCGA-D3-A8GL-06 22 23090301 23090301 C T IGLV3-16 Silent p.F80F 0.53 TCGA-D3-A8GL-06 22 23742228 23742228 C T ZDHHC8P1 RNA 0.60 TCGA-D3-A8GL-06 22 24179197 24179197 C T DERL3 Intron 0.35 TCGA-D3-A8GL-06 22 24583191 24583191 C T SUSD2 Missense_Mutation p.A555V 0.45 tolerated(0.3) benign(0.06) TCGA-D3-A8GL-06 22 26692880 26692880 G A SEZ6L Silent p.G332G 0.54 TCGA-D3-A8GL-06 22 30887849 30887849 C T SEC14L4 Missense_Mutation p.E295K 0.47 deleterious(0.01) possibly_damaging(0.757) TCGA-D3-A8GL-06 22 32754062 32754062 A G RFPL3 Missense_Mutation p.K2E 0.50 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GL-06 22 37329951 37329951 C T CSF2RB Silent p.A410A 1.00 TCGA-D3-A8GL-06 22 37333432 37333432 G A CSF2RB Missense_Mutation p.G528R 1.00 tolerated(0.24) benign(0.171) TCGA-D3-A8GL-06 22 38474455 38474455 C A SLC16A8 Silent p.R485R 0.97 TCGA-D3-A8GL-06 22 38474456 38474456 C T SLC16A8 Missense_Mutation p.R485Q 0.95 tolerated(0.83) benign(0.001) TCGA-D3-A8GL-06 22 39482304 39482304 C T APOBEC3G Silent p.F252F 0.96 TCGA-D3-A8GL-06 22 40055519 40055519 C T CACNA1I Silent p.F804F 1.00 TCGA-D3-A8GL-06 22 40417684 40417684 C T FAM83F Silent p.P390P 0.97 TCGA-D3-A8GL-06 22 41574015 41574015 C T EP300 Silent p.I2100I 0.84 TCGA-D3-A8GL-06 22 46656906 46656906 C T PKDREJ Missense_Mutation p.D772N 0.46 tolerated(0.5) benign(0.01) TCGA-D3-A8GL-06 22 46790141 46790141 G A CELSR1 Silent p.P1954P 0.88 TCGA-D3-A8GL-06 2 101591946 101591946 G A NPAS2 Missense_Mutation p.A437T 0.51 tolerated(0.66) benign(0.002) TCGA-D3-A8GL-06 2 101898392 101898392 G A RNF149 Missense_Mutation p.S363F 0.40 deleterious(0.03) possibly_damaging(0.815) TCGA-D3-A8GL-06 2 102804326 102804326 G A IL1RL2 5'UTR 0.44 TCGA-D3-A8GL-06 2 102808580 102808580 G A IL1RL2 Silent p.K163K 0.43 TCGA-D3-A8GL-06 2 102959791 102959791 G A IL1RL1 Missense_Mutation p.D296N 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 2 103040512 103040512 C T IL18RAP Silent p.I104I 0.45 TCGA-D3-A8GL-06 2 103068288 103068288 C T IL18RAP Missense_Mutation p.P483S 0.35 deleterious(0.03) probably_damaging(0.919) TCGA-D3-A8GL-06 2 103124646 103124646 C T SLC9A4 Missense_Mutation p.S436L 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 103148910 103148910 G A SLC9A4 Silent p.R720R 0.39 TCGA-D3-A8GL-06 2 103274037 103274037 C T SLC9A2 Missense_Mutation p.H102Y 0.62 tolerated(0.28) benign(0.022) TCGA-D3-A8GL-06 2 103324745 103324745 A T SLC9A2 Missense_Mutation p.T746S 0.48 tolerated(0.78) benign(0) TCGA-D3-A8GL-06 2 106498484 106498484 C T NCK2 Silent p.L309L 0.31 TCGA-D3-A8GL-06 2 107039552 107039552 G A RGPD3 Missense_Mutation p.S1624F 0.22 deleterious_low_confidence(0) benign(0.03) TCGA-D3-A8GL-06 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.40 benign(0.002) TCGA-D3-A8GL-06 2 108488178 108488178 C T RGPD4 Missense_Mutation p.P1240S 0.40 tolerated(0.48) benign(0.018) TCGA-D3-A8GL-06 2 108627007 108627007 C T SLC5A7 Missense_Mutation p.P478L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 2 108863669 108863669 A C SULT1C3 Missense_Mutation p.N7H 0.49 deleterious(0.04) possibly_damaging(0.75) TCGA-D3-A8GL-06 2 111907647 111907647 G A BCL2L11 Missense_Mutation p.D141N 0.55 tolerated(0.06) possibly_damaging(0.458) TCGA-D3-A8GL-06 2 113593149 113593149 C T IL1B Silent p.Q31Q 0.42 TCGA-D3-A8GL-06 2 113676282 113676282 G A IL37 Missense_Mutation p.E185K 0.47 tolerated(0.1) benign(0.271) TCGA-D3-A8GL-06 2 116101408 116101408 C T DPP10 Missense_Mutation p.S68L 0.40 tolerated(0.33) benign(0.001) TCGA-D3-A8GL-06 2 11718515 11718515 C T GREB1 Missense_Mutation p.P244S 0.55 tolerated(0.21) benign(0.014) TCGA-D3-A8GL-06 2 11729000 11729000 C T GREB1 Nonsense_Mutation p.Q430* 0.28 TCGA-D3-A8GL-06 2 119735466 119735466 G A MARCO Missense_Mutation p.G241R 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 2 119739067 119739067 G A MARCO Silent p.G283G 0.47 TCGA-D3-A8GL-06 2 119750716 119750716 C T MARCO Silent p.S423S 0.47 TCGA-D3-A8GL-06 2 120236484 120236484 C T SCTR Silent p.G68G 0.36 TCGA-D3-A8GL-06 2 120723176 120723176 G A PTPN4 Missense_Mutation p.R838Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 2 121744184 121744184 G A GLI2 Missense_Mutation p.G763R 0.33 deleterious(0.01) possibly_damaging(0.456) TCGA-D3-A8GL-06 2 122182864 122182864 G A CLASP1 Missense_Mutation p.S688F 0.31 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GL-06 2 125232375 125232375 C T CNTNAP5 Silent p.F326F 0.54 TCGA-D3-A8GL-06 2 125547482 125547482 G A CNTNAP5 Missense_Mutation p.G918E 0.26 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GL-06 2 1271326 1271326 G A SNTG2 Missense_Mutation p.E423K 0.67 deleterious(0.03) possibly_damaging(0.786) TCGA-D3-A8GL-06 2 127944924 127944924 T C CYP27C1 Missense_Mutation p.N348D 0.37 tolerated(0.47) benign(0.001) TCGA-D3-A8GL-06 2 128050292 128050292 G A ERCC3 Missense_Mutation p.S122F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 2 128079722 128079722 A T MAP3K2 Missense_Mutation p.S315R 0.57 tolerated(0.38) possibly_damaging(0.776) TCGA-D3-A8GL-06 2 128263102 128263102 C T IWS1 Missense_Mutation p.R126K 0.46 tolerated_low_confidence(0.57) benign(0) TCGA-D3-A8GL-06 2 128409224 128409224 C T GPR17 Silent p.R333R 0.46 TCGA-D3-A8GL-06 2 131520162 131520162 G A AMER3 Missense_Mutation p.D173N 0.23 tolerated(1) benign(0) TCGA-D3-A8GL-06 2 136564739 136564739 G A LCT Missense_Mutation p.P1378S 0.40 deleterious(0.02) possibly_damaging(0.817) TCGA-D3-A8GL-06 2 136569980 136569980 G A LCT Missense_Mutation p.L752F 0.48 deleterious(0) possibly_damaging(0.889) TCGA-D3-A8GL-06 2 136575403 136575403 C T LCT Silent p.G405G 0.48 TCGA-D3-A8GL-06 2 137814112 137814112 C T THSD7B Missense_Mutation p.P88S 0.48 tolerated(0.62) possibly_damaging(0.803) TCGA-D3-A8GL-06 2 138169409 138169409 A G THSD7B Missense_Mutation p.R976G 0.41 deleterious(0) benign(0.291) TCGA-D3-A8GL-06 2 138208517 138208517 G A THSD7B Missense_Mutation p.R1021K 0.50 tolerated(1) unknown(0) TCGA-D3-A8GL-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.53 deleterious(0) unknown(0) TCGA-D3-A8GL-06 2 141108496 141108496 G A LRP1B Missense_Mutation p.S3921L 0.49 benign(0.307) TCGA-D3-A8GL-06 2 141473606 141473606 G A LRP1B Missense_Mutation p.R1987C 0.43 possibly_damaging(0.898) TCGA-D3-A8GL-06 2 141660692 141660692 G A LRP1B Missense_Mutation p.S1188F 0.53 possibly_damaging(0.485) TCGA-D3-A8GL-06 2 141660725 141660725 G A LRP1B Missense_Mutation p.S1177L 0.37 benign(0.32) TCGA-D3-A8GL-06 2 141709504 141709504 G A LRP1B Missense_Mutation p.P965S 0.34 probably_damaging(0.973) TCGA-D3-A8GL-06 2 141747182 141747182 G A LRP1B Missense_Mutation p.R897C 0.42 probably_damaging(0.985) TCGA-D3-A8GL-06 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.42 possibly_damaging(0.553) TCGA-D3-A8GL-06 2 142012130 142012130 C T LRP1B Missense_Mutation p.D142N 0.36 possibly_damaging(0.539) TCGA-D3-A8GL-06 2 1440132 1440132 C T TPO Missense_Mutation p.P153L 0.58 tolerated(0.71) benign(0.001) TCGA-D3-A8GL-06 2 1488402 1488402 T A TPO Missense_Mutation p.L458Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 2 152486094 152486094 G A NEB Missense_Mutation p.P3264S 0.46 benign(0.435) TCGA-D3-A8GL-06 2 152500340 152500340 G A NEB Nonsense_Mutation p.Q2650* 0.41 TCGA-D3-A8GL-06 2 152582017 152582017 C T NEB Missense_Mutation p.D118N 0.43 possibly_damaging(0.637) TCGA-D3-A8GL-06 2 152695665 152695665 C T CACNB4 Missense_Mutation p.G511R 0.50 deleterious_low_confidence(0.03) benign(0.398) TCGA-D3-A8GL-06 2 158157308 158157308 G A GALNT5 Missense_Mutation p.V746M 0.48 tolerated(0.13) benign(0.15) TCGA-D3-A8GL-06 2 158977949 158977949 G A UPP2 Silent p.T218T 0.41 TCGA-D3-A8GL-06 2 160043525 160043525 C T TANC1 Missense_Mutation p.P911L 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 160697370 160697370 C G LY75-CD302 Missense_Mutation p.S1126T 0.38 deleterious(0.05) benign(0.01) TCGA-D3-A8GL-06 2 162870924 162870924 T A DPP4 Missense_Mutation p.Y540F 0.46 deleterious(0.02) benign(0.03) TCGA-D3-A8GL-06 2 162875755 162875755 G A DPP4 Missense_Mutation p.P426S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 163029670 163029670 C T FAP Missense_Mutation p.G699E 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 163292065 163292065 G A KCNH7 Missense_Mutation p.R533C 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 166011088 166011088 C T SCN3A Silent p.L418L 0.41 TCGA-D3-A8GL-06 2 166012283 166012283 G A SCN3A Missense_Mutation p.L388F 0.44 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 2 167094738 167094738 T C SCN9A Missense_Mutation p.K1212E 0.42 deleterious(0) benign(0.267) TCGA-D3-A8GL-06 2 1677425 1677425 G A PXDN Silent p.F336F 0.36 TCGA-D3-A8GL-06 2 168074726 168074726 G A XIRP2 Silent p.V258V 0.39 TCGA-D3-A8GL-06 2 168099571 168099571 C T XIRP2 Silent p.L557L 0.48 TCGA-D3-A8GL-06 2 168099948 168099948 G A XIRP2 Silent p.K682K 0.48 TCGA-D3-A8GL-06 2 170510607 170510607 C T CCDC173 Missense_Mutation p.E313K 0.29 tolerated(0.47) benign(0.065) TCGA-D3-A8GL-06 2 171240224 171240224 C T MYO3B Missense_Mutation p.S397F 0.48 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GL-06 2 172950325 172950325 C T DLX1 5'UTR 0.56 TCGA-D3-A8GL-06 2 173848293 173848293 C T RAPGEF4 Silent p.S358S 0.50 TCGA-D3-A8GL-06 2 174062857 174062857 C T MLTK Intron 0.51 TCGA-D3-A8GL-06 2 177016650 177016650 C T HOXD4 Missense_Mutation p.P97S 0.69 tolerated(0.42) possibly_damaging(0.641) TCGA-D3-A8GL-06 2 17884505 17884505 T C SMC6 Silent p.Q687Q 0.50 TCGA-D3-A8GL-06 2 179411333 179411333 C T TTN Missense_Mutation p.E31608K 0.32 TCGA-D3-A8GL-06 2 179417587 179417587 C T TTN Missense_Mutation p.G30014R 0.53 TCGA-D3-A8GL-06 2 179417711 179417711 C T TTN Silent p.K29972K 0.51 TCGA-D3-A8GL-06 2 179431757 179431757 C T TTN Missense_Mutation p.G26368S 0.39 TCGA-D3-A8GL-06 2 179438676 179438676 C T TTN Missense_Mutation p.M24061I 0.48 TCGA-D3-A8GL-06 2 179455319 179455319 G A TTN Missense_Mutation p.P20378L 0.50 TCGA-D3-A8GL-06 2 179458318 179458318 G A TTN Missense_Mutation p.S19570L 0.47 TCGA-D3-A8GL-06 2 179471929 179471929 G A TTN Silent p.I17800I 0.46 TCGA-D3-A8GL-06 2 179489379 179489379 G A TTN Silent p.V14876V 0.31 TCGA-D3-A8GL-06 2 179542555 179542555 C T TTN Missense_Mutation p.E11362K 0.46 TCGA-D3-A8GL-06 2 179552933 179552933 C T TTN Nonsense_Mutation p.W10739* 0.46 TCGA-D3-A8GL-06 2 179577968 179577968 C T TTN Missense_Mutation p.E8965K 0.35 TCGA-D3-A8GL-06 2 179582292 179582292 G A TTN Missense_Mutation p.P8437S 0.40 TCGA-D3-A8GL-06 2 179590747 179590747 G A TTN Missense_Mutation p.P6768S 0.44 TCGA-D3-A8GL-06 2 179604128 179604128 G T TTN Missense_Mutation p.P4611H 0.34 TCGA-D3-A8GL-06 2 179604910 179604910 C T TTN Silent p.V4350V 0.57 TCGA-D3-A8GL-06 2 179614250 179614250 G A TTN Intron 0.50 TCGA-D3-A8GL-06 2 179615354 179615354 C T TTN Intron 0.42 TCGA-D3-A8GL-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.33 TCGA-D3-A8GL-06 2 179637871 179637871 C T TTN Missense_Mutation p.G2607E 0.37 TCGA-D3-A8GL-06 2 180308024 180308024 C T ZNF385B Missense_Mutation p.G457R 0.25 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 2 182358120 182358120 G A ITGA4 Missense_Mutation p.D408N 0.37 tolerated(0.23) benign(0.008) TCGA-D3-A8GL-06 2 182400280 182400280 G A ITGA4 3'UTR 0.48 TCGA-D3-A8GL-06 2 182423392 182423392 G A CERKL Missense_Mutation p.H267Y 0.53 deleterious(0.02) probably_damaging(0.968) TCGA-D3-A8GL-06 2 185801972 185801972 C T ZNF804A Missense_Mutation p.R617C 0.42 tolerated(0.18) benign(0) TCGA-D3-A8GL-06 2 185803521 185803521 C T ZNF804A Missense_Mutation p.S1133F 0.47 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GL-06 2 186671341 186671341 G A FSIP2 Missense_Mutation p.D5859N 0.42 benign(0.001) TCGA-D3-A8GL-06 2 186673671 186673671 A - FSIP2 Frame_Shift_Del p.T6637Lfs*12 0.22 TCGA-D3-A8GL-06 2 186678311 186678311 G A FSIP2 Missense_Mutation p.D6712N 0.43 probably_damaging(0.998) TCGA-D3-A8GL-06 2 187692724 187692724 C T ZSWIM2 Missense_Mutation p.G630E 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GL-06 2 189393851 189393851 G A GULP1 Missense_Mutation p.G64S 0.49 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A8GL-06 2 189855067 189855067 C T COL3A1 Missense_Mutation p.P260L 0.52 unknown(0) TCGA-D3-A8GL-06 2 189871142 189871142 C T COL3A1 Silent p.V1055V 0.30 TCGA-D3-A8GL-06 2 1926193 1926193 C G MYT1L Missense_Mutation p.E450Q 0.41 deleterious(0.01) possibly_damaging(0.624) TCGA-D3-A8GL-06 2 1926946 1926946 C T MYT1L Missense_Mutation p.E199K 0.53 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 2 196659194 196659194 G A DNAH7 Silent p.F3528F 0.43 TCGA-D3-A8GL-06 2 196729283 196729283 C T DNAH7 Missense_Mutation p.E2366K 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GL-06 2 198949768 198949768 G A PLCL1 Silent p.K509K 0.49 TCGA-D3-A8GL-06 2 198950721 198950721 C T PLCL1 Missense_Mutation p.P827L 0.48 deleterious(0.03) possibly_damaging(0.613) TCGA-D3-A8GL-06 2 202122944 202122944 G A CASP8 5'UTR 0.40 TCGA-D3-A8GL-06 2 203661642 203661642 C T ICA1L Missense_Mutation p.G319E 0.45 tolerated(0.8) benign(0.009) TCGA-D3-A8GL-06 2 204143314 204143314 C T CYP20A1 Missense_Mutation p.S233F 0.35 deleterious(0.01) possibly_damaging(0.464) TCGA-D3-A8GL-06 2 207041744 207041744 G A GPR1 Silent p.F76F 0.48 TCGA-D3-A8GL-06 2 207804377 207804377 G A CPO Silent p.G18G 0.46 TCGA-D3-A8GL-06 2 207825643 207825643 G A CPO Missense_Mutation p.R184Q 0.49 tolerated(0.07) possibly_damaging(0.723) TCGA-D3-A8GL-06 2 209309522 209309522 C T PTH2R Silent p.L255L 0.43 TCGA-D3-A8GL-06 2 20939847 20939847 A G C2orf43 Missense_Mutation p.L196S 0.43 tolerated(0.19) benign(0.088) TCGA-D3-A8GL-06 2 20974606 20974606 G A C2orf43 Silent p.F144F 0.54 TCGA-D3-A8GL-06 2 211019098 211019098 G A KANSL1L Missense_Mutation p.S70F 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 2 212248400 212248400 G A ERBB4 Silent p.S1289S 0.29 TCGA-D3-A8GL-06 2 21229366 21229366 C T APOB Missense_Mutation p.M3458I 0.44 benign(0) TCGA-D3-A8GL-06 2 21231990 21231990 C T APOB Missense_Mutation p.G2584R 0.45 probably_damaging(0.999) TCGA-D3-A8GL-06 2 213921627 213921627 C T IKZF2 Silent p.L112L 0.31 TCGA-D3-A8GL-06 2 215818596 215818596 G A ABCA12 Missense_Mutation p.S2210F 0.43 tolerated(0.7) benign(0.001) TCGA-D3-A8GL-06 2 216288940 216288940 C T FN1 Missense_Mutation p.G382E 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 216903975 216903975 G A PECR 3'UTR 0.37 TCGA-D3-A8GL-06 2 216960640 216960640 A T TMEM169 5'UTR 0.26 TCGA-D3-A8GL-06 2 217123982 217123982 C T MARCH4 3'UTR 0.40 TCGA-D3-A8GL-06 2 217528771 217528771 C T IGFBP2 Missense_Mutation p.L308F 0.40 deleterious(0.05) possibly_damaging(0.848) TCGA-D3-A8GL-06 2 218682701 218682701 G A TNS1 Missense_Mutation p.P1348S 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GL-06 2 218940220 218940220 G A RUFY4 Silent p.K355K 0.37 TCGA-D3-A8GL-06 2 219222725 219222725 C T C2orf62 Intron 0.54 TCGA-D3-A8GL-06 2 219297599 219297599 C T VIL1 Silent p.V475V 0.42 TCGA-D3-A8GL-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.35 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GL-06 2 219506759 219506759 G A ZNF142 Missense_Mutation p.R1494C 0.50 deleterious(0) possibly_damaging(0.898) TCGA-D3-A8GL-06 2 219870227 219870227 G A CCDC108 Silent p.S1660S 0.36 TCGA-D3-A8GL-06 2 220162820 220162820 C T PTPRN Silent p.E558E 0.42 TCGA-D3-A8GL-06 2 220353000 220353000 C T SPEG Missense_Mutation p.A2609V 0.52 possibly_damaging(0.826) TCGA-D3-A8GL-06 2 220500155 220500155 C T SLC4A3 Nonsense_Mutation p.R664* 0.37 TCGA-D3-A8GL-06 2 224463355 224463355 G A SCG2 Missense_Mutation p.R216C 0.51 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GL-06 2 224463356 224463356 T A SCG2 Missense_Mutation p.K215N 0.51 tolerated(0.05) probably_damaging(0.989) TCGA-D3-A8GL-06 2 226446834 226446834 C T NYAP2 Missense_Mutation p.P234L 0.50 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GL-06 2 227877005 227877005 C T COL4A4 Missense_Mutation p.G1409R 0.47 unknown(0) TCGA-D3-A8GL-06 2 227896959 227896959 C T COL4A4 Missense_Mutation p.G1204E 0.60 unknown(0) TCGA-D3-A8GL-06 2 227942649 227942649 G A COL4A4 Missense_Mutation p.P650S 0.38 probably_damaging(0.96) TCGA-D3-A8GL-06 2 227946902 227946902 C T COL4A4 Missense_Mutation p.G542E 0.49 probably_damaging(0.993) TCGA-D3-A8GL-06 2 228120761 228120761 G A COL4A3 Missense_Mutation p.G303D 0.56 probably_damaging(1) TCGA-D3-A8GL-06 2 228148501 228148501 G A COL4A3 Missense_Mutation p.G892E 0.35 unknown(0) TCGA-D3-A8GL-06 2 228552245 228552245 G A SLC19A3 Silent p.F453F 0.45 TCGA-D3-A8GL-06 2 228855772 228855772 C T SPHKAP Missense_Mutation p.E1635K 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 228882158 228882158 C T SPHKAP Missense_Mutation p.E1138K 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 2 228883255 228883255 G A SPHKAP Missense_Mutation p.S772F 0.48 tolerated(0.06) benign(0.041) TCGA-D3-A8GL-06 2 230910783 230910783 G A SLC16A14 Silent p.F353F 0.43 TCGA-D3-A8GL-06 2 233391307 233391307 G A CHRND Missense_Mutation p.E41K 0.37 tolerated(0.48) benign(0.053) TCGA-D3-A8GL-06 2 234113065 234113065 C T INPP5D Missense_Mutation p.S1078F 0.45 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-D3-A8GL-06 2 234442220 234442220 G A USP40 Missense_Mutation p.P470L 0.41 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 2 234638138 234638138 G A UGT1A3 Silent p.L122L 0.45 TCGA-D3-A8GL-06 2 234652466 234652466 C T UGT1A10 Intron 0.45 TCGA-D3-A8GL-06 2 234680942 234680942 C T UGT1A4 Missense_Mutation p.H448Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 2 238419635 238419635 C T MLPH Silent p.V112V 0.42 TCGA-D3-A8GL-06 2 239141147 239141147 G A AC016757.3 5'Flank 0.43 TCGA-D3-A8GL-06 2 240029770 240029770 C T HDAC4 Silent p.E691E 0.46 TCGA-D3-A8GL-06 2 24021129 24021129 C T ATAD2B Nonsense_Mutation p.W840* 0.33 TCGA-D3-A8GL-06 2 241398548 241398548 C T GPC1 Missense_Mutation p.R90W 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-D3-A8GL-06 2 241658546 241658546 G A KIF1A Silent p.F1697F 0.43 TCGA-D3-A8GL-06 2 24522776 24522776 A G ITSN2 Splice_Site p.X448_splice 0.45 TCGA-D3-A8GL-06 2 25982368 25982368 G A ASXL2 Missense_Mutation p.P308S 0.36 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 2 26676363 26676363 C T DRC1 Missense_Mutation p.P622L 0.50 deleterious(0) possibly_damaging(0.899) TCGA-D3-A8GL-06 2 26683719 26683719 C T OTOF Splice_Site p.X1904_splice 0.43 TCGA-D3-A8GL-06 2 26684711 26684711 G A OTOF Missense_Mutation p.P1796S 0.35 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GL-06 2 27305264 27305264 G A EMILIN1 Silent p.R275R 0.33 TCGA-D3-A8GL-06 2 27360519 27360519 C T C2orf53 Missense_Mutation p.D227N 0.50 deleterious(0.01) probably_damaging(0.947) TCGA-D3-A8GL-06 2 27801932 27801932 G A C2orf16 Missense_Mutation p.M831I 0.46 tolerated(0.18) benign(0.002) TCGA-D3-A8GL-06 2 28050617 28050617 C T RBKS Silent p.E204E 0.57 TCGA-D3-A8GL-06 2 31805749 31805749 G A SRD5A2 RNA 0.38 TCGA-D3-A8GL-06 2 32693800 32693800 A T BIRC6 Missense_Mutation p.I2026F 0.53 benign(0.157) TCGA-D3-A8GL-06 2 37076509 37076509 G A STRN 3'UTR 0.50 TCGA-D3-A8GL-06 2 39411738 39411738 G A CDKL4 Silent p.F262F 0.30 TCGA-D3-A8GL-06 2 39417623 39417623 C T CDKL4 Missense_Mutation p.D159N 0.49 deleterious(0) benign(0.178) TCGA-D3-A8GL-06 2 40656079 40656079 C T SLC8A1 Missense_Mutation p.D448N 0.49 tolerated(0.08) probably_damaging(0.957) TCGA-D3-A8GL-06 2 40656230 40656230 G T SLC8A1 Missense_Mutation p.N397K 0.48 tolerated(0.92) benign(0.01) TCGA-D3-A8GL-06 2 43969993 43969993 G A PLEKHH2 Missense_Mutation p.R1112Q 0.44 deleterious(0.03) possibly_damaging(0.65) TCGA-D3-A8GL-06 2 44123799 44123799 G A LRPPRC Missense_Mutation p.L1292F 0.29 tolerated(0.6) benign(0.005) TCGA-D3-A8GL-06 2 54785944 54785944 C T SPTBN1 Intron 0.42 TCGA-D3-A8GL-06 2 55555529 55555529 C T CCDC88A Silent p.K965K 0.51 TCGA-D3-A8GL-06 2 56602992 56602992 T C CCDC85A Silent p.S498S 0.38 TCGA-D3-A8GL-06 2 63348979 63348979 A T WDPCP 3'UTR 0.62 TCGA-D3-A8GL-06 2 68765310 68765310 G A APLF Missense_Mutation p.G371R 0.43 tolerated(0.06) benign(0.052) TCGA-D3-A8GL-06 2 69173468 69173468 G A GKN2 Missense_Mutation p.P147L 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 2 70903913 70903913 C G ADD2 Intron 0.47 TCGA-D3-A8GL-06 2 71058127 71058127 C T CD207 3'UTR 0.58 TCGA-D3-A8GL-06 2 71883421 71883421 G A DYSF Splice_Site p.X1585_splice 0.51 TCGA-D3-A8GL-06 2 71913645 71913645 G A DYSF 3'UTR 0.40 TCGA-D3-A8GL-06 2 73118700 73118700 C T SPR 3'UTR 0.33 TCGA-D3-A8GL-06 2 74042602 74042602 C T C2orf78 Silent p.L418L 0.39 TCGA-D3-A8GL-06 2 74043401 74043401 C T C2orf78 Missense_Mutation p.P684L 0.53 tolerated(0.08) benign(0.029) TCGA-D3-A8GL-06 2 74275326 74275326 C T TET3 Missense_Mutation p.S626F 0.45 deleterious(0) possibly_damaging(0.61) TCGA-D3-A8GL-06 2 74652322 74652322 C T WDR54 Silent p.A252A 0.49 TCGA-D3-A8GL-06 2 74702354 74702354 G A CCDC142 Silent p.F591F 0.49 TCGA-D3-A8GL-06 2 74784056 74784056 C T DOK1 Missense_Mutation p.L421F 0.45 deleterious(0.02) benign(0.11) TCGA-D3-A8GL-06 2 79253218 79253218 C T REG3G 5'UTR 0.36 TCGA-D3-A8GL-06 2 79255008 79255008 C T REG3G Missense_Mutation p.P137S 0.46 deleterious(0.04) probably_damaging(0.991) TCGA-D3-A8GL-06 2 79255009 79255009 C T REG3G Missense_Mutation p.P137L 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GL-06 2 86088395 86088395 C T ST3GAL5 Missense_Mutation p.G76E 0.36 deleterious(0.02) benign(0.424) TCGA-D3-A8GL-06 2 86267635 86267635 G C POLR1A Missense_Mutation p.P1207R 0.50 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 2 89416924 89416924 C T IGKV1-17 Missense_Mutation p.S87N 0.37 deleterious(0) possibly_damaging(0.691) TCGA-D3-A8GL-06 2 89459523 89459523 C T IGKV6-21 Silent p.R18R 0.40 TCGA-D3-A8GL-06 2 89521931 89521931 G A IGKV2-28 5'UTR 0.52 TCGA-D3-A8GL-06 2 96963118 96963118 G A SNRNP200 Missense_Mutation p.P454S 0.56 tolerated(0.09) benign(0.052) TCGA-D3-A8GL-06 2 97462825 97462825 G A CNNM4 Silent p.L493L 0.39 TCGA-D3-A8GL-06 2 97749701 97749701 G A FAHD2B Missense_Mutation p.P289L 0.30 deleterious(0) possibly_damaging(0.558) TCGA-D3-A8GL-06 2 98996743 98996743 T G CNGA3 Silent p.L107L 0.52 TCGA-D3-A8GL-06 3 100570727 100570727 G A ABI3BP Missense_Mutation p.S406F 0.41 deleterious(0.02) possibly_damaging(0.485) TCGA-D3-A8GL-06 3 100995543 100995543 G A IMPG2 Missense_Mutation p.S183F 0.31 deleterious(0.05) benign(0.009) TCGA-D3-A8GL-06 3 101405558 101405558 G A RPL24 5'UTR 0.36 TCGA-D3-A8GL-06 3 102153992 102153992 G A ZPLD1 Missense_Mutation p.D12N 0.55 tolerated_low_confidence(0.56) benign(0) TCGA-D3-A8GL-06 3 108072501 108072501 G A HHLA2 Missense_Mutation p.E98K 0.40 deleterious(0.02) benign(0.444) TCGA-D3-A8GL-06 3 108074213 108074213 C T HHLA2 Missense_Mutation p.R224C 0.43 deleterious(0) possibly_damaging(0.818) TCGA-D3-A8GL-06 3 109049624 109049624 C T DPPA4 Silent p.R142R 0.32 TCGA-D3-A8GL-06 3 109052820 109052820 C T DPPA4 Silent p.S25S 0.51 TCGA-D3-A8GL-06 3 111664165 111664165 G A PHLDB2 Silent p.G816G 0.49 TCGA-D3-A8GL-06 3 112080472 112080472 G A CD200 3'UTR 0.45 TCGA-D3-A8GL-06 3 112989762 112989762 C T BOC Missense_Mutation p.S213F 0.48 deleterious(0) benign(0.248) TCGA-D3-A8GL-06 3 113371873 113371873 G A KIAA2018 3'UTR 0.25 TCGA-D3-A8GL-06 3 113858352 113858352 G A DRD3 Nonsense_Mutation p.Q240* 0.33 TCGA-D3-A8GL-06 3 113890786 113890786 C T DRD3 Silent p.E18E 0.50 TCGA-D3-A8GL-06 3 113955375 113955375 G A ZNF80 Missense_Mutation p.H183Y 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 3 118865433 118865433 C T C3orf30 Nonsense_Mutation p.Q133* 0.42 TCGA-D3-A8GL-06 3 120400990 120400990 G A HGD 5'UTR 0.45 TCGA-D3-A8GL-06 3 121527857 121527857 C T IQCB1 Splice_Site p.X132_splice 0.23 TCGA-D3-A8GL-06 3 121613314 121613314 G A SLC15A2 5'UTR 0.48 TCGA-D3-A8GL-06 3 121646632 121646632 G A SLC15A2 Missense_Mutation p.M384I 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-D3-A8GL-06 3 121720627 121720627 C G ILDR1 Missense_Mutation p.G155A 0.41 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 3 121980722 121980722 C T CASR Silent p.I280I 0.57 TCGA-D3-A8GL-06 3 121994750 121994750 C T CASR Missense_Mutation p.S490F 0.33 deleterious(0) possibly_damaging(0.821) TCGA-D3-A8GL-06 3 122056434 122056434 G A CSTA Missense_Mutation p.G36E 0.45 tolerated(1) benign(0.002) TCGA-D3-A8GL-06 3 122182848 122182848 G A KPNA1 Missense_Mutation p.S93F 0.38 deleterious(0) probably_damaging(0.931) TCGA-D3-A8GL-06 3 123348364 123348364 C T MYLK Missense_Mutation p.D1691N 0.35 tolerated(0.29) benign(0.013) TCGA-D3-A8GL-06 3 123471262 123471262 G A MYLK Missense_Mutation p.H97Y 0.41 tolerated(0.13) benign(0.14) TCGA-D3-A8GL-06 3 124181421 124181421 C T KALRN Silent p.I1322I 0.27 TCGA-D3-A8GL-06 3 124393220 124393220 G A KALRN Missense_Mutation p.G409R 0.35 tolerated(0.07) possibly_damaging(0.779) TCGA-D3-A8GL-06 3 124646453 124646453 G A MUC13 Missense_Mutation p.T146I 0.44 tolerated(0.06) benign(0.043) TCGA-D3-A8GL-06 3 128990731 128990731 C T COPG1 Silent p.F655F 0.45 TCGA-D3-A8GL-06 3 129130151 129130151 C T EFCAB12 Silent p.K295K 0.44 TCGA-D3-A8GL-06 3 130159252 130159252 G A COL6A5 Missense_Mutation p.G2024S 0.52 tolerated(1) benign(0.013) TCGA-D3-A8GL-06 3 130871515 130871515 G A NEK11 Missense_Mutation p.E280K 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A8GL-06 3 133473421 133473421 C T TF Silent p.S136S 0.41 TCGA-D3-A8GL-06 3 13381524 13381524 C T NUP210 Missense_Mutation p.E1101K 0.51 tolerated(0.07) benign(0.255) TCGA-D3-A8GL-06 3 136667285 136667285 A T NCK1 Missense_Mutation p.H375L 0.42 deleterious(0.01) benign(0.017) TCGA-D3-A8GL-06 3 137781652 137781652 G A DZIP1L 3'UTR 0.43 TCGA-D3-A8GL-06 3 137781762 137781762 G A DZIP1L Silent p.L734L 0.39 TCGA-D3-A8GL-06 3 140282952 140282952 G A CLSTN2 Missense_Mutation p.D878N 0.59 tolerated(0.05) benign(0.353) TCGA-D3-A8GL-06 3 14545154 14545154 C T GRIP2 RNA 0.53 TCGA-D3-A8GL-06 3 14724158 14724158 G A C3orf20 5'UTR 0.45 TCGA-D3-A8GL-06 3 14813685 14813685 G A C3orf20 Silent p.K869K 0.39 TCGA-D3-A8GL-06 3 148603952 148603952 G A CPA3 Missense_Mutation p.E352K 0.37 deleterious(0.02) benign(0) TCGA-D3-A8GL-06 3 14964591 14964591 G A FGD5 Silent p.L1282L 0.33 TCGA-D3-A8GL-06 3 154860063 154860063 G A MME Missense_Mutation p.D378N 0.45 tolerated(0.17) benign(0.02) TCGA-D3-A8GL-06 3 154865010 154865010 C T MME Silent p.L498L 0.45 TCGA-D3-A8GL-06 3 155611341 155611341 A T GMPS Missense_Mutation p.H21L 0.19 tolerated(0.31) benign(0) TCGA-D3-A8GL-06 3 160804461 160804461 G A B3GALNT1 Silent p.L28L 0.48 TCGA-D3-A8GL-06 3 161214691 161214691 G A OTOL1 Silent p.T32T 0.62 TCGA-D3-A8GL-06 3 164737462 164737462 C T SI Silent p.V1117V 0.41 TCGA-D3-A8GL-06 3 164905999 164905999 G A SLITRK3 Missense_Mutation p.P874S 0.42 tolerated_low_confidence(0.29) possibly_damaging(0.857) TCGA-D3-A8GL-06 3 164906118 164906118 T C SLITRK3 Missense_Mutation p.N834S 0.52 tolerated(0.55) benign(0.162) TCGA-D3-A8GL-06 3 167183071 167183071 T A SERPINI2 Missense_Mutation p.E263D 0.40 deleterious(0.02) possibly_damaging(0.899) TCGA-D3-A8GL-06 3 167189608 167189608 G A SERPINI2 Silent p.F5F 0.47 TCGA-D3-A8GL-06 3 167254746 167254746 G A WDR49 Silent p.F270F 0.36 TCGA-D3-A8GL-06 3 168807858 168807858 C T MECOM Missense_Mutation p.E988K 0.38 tolerated(0.2) benign(0.02) TCGA-D3-A8GL-06 3 168834324 168834324 G A MECOM Missense_Mutation p.P323S 0.43 tolerated(0.33) probably_damaging(0.999) TCGA-D3-A8GL-06 3 170216472 170216472 G A SLC7A14 Missense_Mutation p.P248L 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 3 17051844 17051844 C T PLCL2 Missense_Mutation p.H210Y 0.47 tolerated(0.34) possibly_damaging(0.507) TCGA-D3-A8GL-06 3 17053353 17053353 G A PLCL2 Missense_Mutation p.D713N 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 174814811 174814811 C T NAALADL2 Missense_Mutation p.S92L 0.52 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 174974236 174974236 G A NAALADL2 Missense_Mutation p.D286N 0.33 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GL-06 3 178546005 178546005 G T KCNMB2 Silent p.A89A 0.33 TCGA-D3-A8GL-06 3 179481888 179481888 G A USP13 Missense_Mutation p.E731K 0.43 deleterious(0.03) probably_damaging(0.969) TCGA-D3-A8GL-06 3 183905726 183905726 C T ABCF3 Missense_Mutation p.S175F 0.37 tolerated(0.09) possibly_damaging(0.635) TCGA-D3-A8GL-06 3 18393651 18393651 G A SATB1 Missense_Mutation p.P538S 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 184005699 184005699 C T ECE2 Silent p.F564F 0.46 TCGA-D3-A8GL-06 3 18436292 18436292 G A SATB1 Missense_Mutation p.H290Y 0.48 deleterious(0.01) possibly_damaging(0.471) TCGA-D3-A8GL-06 3 184947239 184947239 T C EHHADH Silent p.A148A 0.55 TCGA-D3-A8GL-06 3 186392970 186392970 C T HRG Silent p.F244F 0.48 TCGA-D3-A8GL-06 3 187416733 187416733 G A RTP2 Silent p.F77F 0.36 TCGA-D3-A8GL-06 3 189028263 189028263 C T TPRG1 Missense_Mutation p.P190S 0.35 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GL-06 3 189028314 189028314 C T TPRG1 Missense_Mutation p.L207F 0.45 tolerated(0.05) benign(0.166) TCGA-D3-A8GL-06 3 190126194 190126194 C T CLDN16 Silent p.I228I 0.44 TCGA-D3-A8GL-06 3 192516859 192516859 C T MB21D2 Silent p.E264E 0.44 TCGA-D3-A8GL-06 3 194081072 194081072 C T LRRC15 Missense_Mutation p.G240E 0.48 tolerated(1) benign(0.007) TCGA-D3-A8GL-06 3 194081669 194081669 G A LRRC15 Missense_Mutation p.S41F 0.55 deleterious(0) probably_damaging(0.916) TCGA-D3-A8GL-06 3 194790479 194790479 G A XXYLT1 Missense_Mutation p.H383Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 195295690 195295690 G A APOD 3'UTR 0.47 TCGA-D3-A8GL-06 3 195452804 195452804 C T MUC20 Missense_Mutation p.L444F 0.18 tolerated(0.3) benign(0.016) TCGA-D3-A8GL-06 3 195515802 195515802 C T MUC4 Silent p.G883G 0.55 TCGA-D3-A8GL-06 3 195615414 195615414 C T TNK2 Missense_Mutation p.E79K 0.31 deleterious(0.04) probably_damaging(0.953) TCGA-D3-A8GL-06 3 195938210 195938210 G A ZDHHC19 5'UTR 0.58 TCGA-D3-A8GL-06 3 195960003 195960003 G A SLC51A Missense_Mutation p.R319K 0.40 tolerated(0.52) benign(0.004) TCGA-D3-A8GL-06 3 195960004 195960004 G A SLC51A Silent p.R319R 0.40 TCGA-D3-A8GL-06 3 196281652 196281652 G A WDR53 Silent p.A169A 0.46 TCGA-D3-A8GL-06 3 19924164 19924164 G A EFHB Missense_Mutation p.R736C 0.76 deleterious(0.02) possibly_damaging(0.657) TCGA-D3-A8GL-06 3 21462821 21462821 C T ZNF385D Missense_Mutation p.R358Q 0.69 deleterious(0.02) possibly_damaging(0.885) TCGA-D3-A8GL-06 3 21465518 21465518 C T ZNF385D Silent p.G297G 0.56 TCGA-D3-A8GL-06 3 24164532 24164532 C T THRB Missense_Mutation p.R410Q 0.43 deleterious(0.03) benign(0.134) TCGA-D3-A8GL-06 3 25777542 25777542 C T NGLY1 Missense_Mutation p.G368R 0.43 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GL-06 3 3081726 3081726 C T CNTN4 Silent p.V723V 0.36 TCGA-D3-A8GL-06 3 35724357 35724357 G A ARPP21 Silent p.Q49Q 0.52 TCGA-D3-A8GL-06 3 36545931 36545931 G A STAC Silent p.A271A 0.31 TCGA-D3-A8GL-06 3 36779488 36779488 C T DCLK3 Missense_Mutation p.M221I 0.57 tolerated(0.55) benign(0) TCGA-D3-A8GL-06 3 36873929 36873929 C T TRANK1 Missense_Mutation p.G2338E 0.43 deleterious(0.02) possibly_damaging(0.747) TCGA-D3-A8GL-06 3 36897543 36897543 G A TRANK1 Missense_Mutation p.P1180S 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A8GL-06 3 36898027 36898027 G A TRANK1 Silent p.I1018I 0.40 TCGA-D3-A8GL-06 3 38052739 38052739 G C PLCD1 Silent p.L273L 0.48 TCGA-D3-A8GL-06 3 38597941 38597941 C T SCN5A Silent p.Q1476Q 0.33 TCGA-D3-A8GL-06 3 38739366 38739366 C T SCN10A Missense_Mutation p.R1782Q 0.49 tolerated(0.23) benign(0.002) TCGA-D3-A8GL-06 3 38739380 38739380 G A SCN10A Silent p.I1777I 0.35 TCGA-D3-A8GL-06 3 38802845 38802845 G A SCN10A Missense_Mutation p.H241Y 0.53 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GL-06 3 38889078 38889078 G A SCN11A Missense_Mutation p.P1495S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 3 38950667 38950667 G A SCN11A Missense_Mutation p.L374F 0.33 tolerated(0.29) benign(0.303) TCGA-D3-A8GL-06 3 402046 402046 C T CHL1 Silent p.Y415Y 0.49 TCGA-D3-A8GL-06 3 42826690 42826690 A T HIGD1A 3'Flank 0.33 TCGA-D3-A8GL-06 3 42916177 42916177 G A CYP8B1 Missense_Mutation p.H378Y 0.41 deleterious(0) benign(0.355) TCGA-D3-A8GL-06 3 44932117 44932117 C T TGM4 Missense_Mutation p.S108F 0.52 deleterious(0.03) benign(0.232) TCGA-D3-A8GL-06 3 44970828 44970828 G A ZDHHC3 Silent p.T265T 0.44 TCGA-D3-A8GL-06 3 46245786 46245786 T A CCR1 Missense_Mutation p.T7S 0.65 tolerated(0.37) unknown(0) TCGA-D3-A8GL-06 3 47042819 47042819 C T NBEAL2 Missense_Mutation p.P1512L 0.46 tolerated(0.26) benign(0) TCGA-D3-A8GL-06 3 48451383 48451383 A T PLXNB1 Silent p.L1903L 0.41 TCGA-D3-A8GL-06 3 48510766 48510766 G A SHISA5 Silent p.L213L 0.45 TCGA-D3-A8GL-06 3 48699582 48699582 G A CELSR3 Silent p.V162V 0.48 TCGA-D3-A8GL-06 3 49200495 49200495 G A CCDC71 Missense_Mutation p.P383S 0.56 tolerated(0.53) unknown(0) TCGA-D3-A8GL-06 3 49456836 49456836 G A AMT Missense_Mutation p.P185S 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 3 49568354 49568354 G A DAG1 Missense_Mutation p.R137Q 0.43 tolerated(0.67) benign(0) TCGA-D3-A8GL-06 3 49691913 49691913 C T BSN Silent p.L1642L 0.36 TCGA-D3-A8GL-06 3 49699885 49699885 C T BSN Missense_Mutation p.S3536F 0.46 unknown(0) TCGA-D3-A8GL-06 3 50324515 50324515 C T LSMEM2 Missense_Mutation p.S126F 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 50679736 50679736 C T MAPKAPK3 Silent p.S159S 0.44 TCGA-D3-A8GL-06 3 51266196 51266196 C T DOCK3 Silent p.F584F 0.42 TCGA-D3-A8GL-06 3 51747058 51747058 C T GRM2 Silent p.S340S 0.27 TCGA-D3-A8GL-06 3 52428670 52428670 C T DNAH1 Missense_Mutation p.P3606S 0.57 probably_damaging(0.987) TCGA-D3-A8GL-06 3 52443855 52443855 C T BAP1 Intron 0.68 TCGA-D3-A8GL-06 3 52469636 52469636 C T SEMA3G Missense_Mutation p.E778K 0.46 tolerated(0.13) possibly_damaging(0.49) TCGA-D3-A8GL-06 3 52476829 52476829 G A SEMA3G Silent p.L70L 0.40 TCGA-D3-A8GL-06 3 52537464 52537464 G A STAB1 Missense_Mutation p.G267R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 3 52552340 52552340 G A STAB1 Missense_Mutation p.D1592N 0.42 tolerated(0.3) benign(0.013) TCGA-D3-A8GL-06 3 52797571 52797571 G A NEK4 Missense_Mutation p.P246S 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 53787679 53787679 G A CACNA1D Missense_Mutation p.M1272I 0.40 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GL-06 3 54798318 54798318 G A CACNA2D3 Silent p.R440R 0.39 TCGA-D3-A8GL-06 3 54913077 54913077 G A CACNA2D3 Silent p.G581G 0.42 TCGA-D3-A8GL-06 3 56779337 56779337 G A ARHGEF3 Missense_Mutation p.L288F 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 3 58084481 58084481 G A FLNB Silent p.Q397Q 0.36 TCGA-D3-A8GL-06 3 58120455 58120455 G A FLNB Missense_Mutation p.D1574N 0.45 deleterious(0) probably_damaging(0.945) TCGA-D3-A8GL-06 3 62385242 62385242 G A CADPS Nonsense_Mutation p.R1301* 0.37 TCGA-D3-A8GL-06 3 62518684 62518684 C T CADPS Missense_Mutation p.R718Q 0.38 deleterious(0) benign(0.238) TCGA-D3-A8GL-06 3 62535616 62535616 C T CADPS Missense_Mutation p.G643E 0.41 deleterious(0.02) probably_damaging(0.931) TCGA-D3-A8GL-06 3 64524926 64524926 G A ADAMTS9 Missense_Mutation p.P1856S 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 3 65361490 65361490 G A MAGI1 Silent p.S1042S 0.39 TCGA-D3-A8GL-06 3 68055799 68055799 C T FAM19A1 Silent p.V10V 0.38 TCGA-D3-A8GL-06 3 68782228 68782228 G A FAM19A4 3'UTR 0.46 TCGA-D3-A8GL-06 3 68802145 68802145 G A FAM19A4 Missense_Mutation p.T52I 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 3 72881533 72881533 G A SHQ1 Missense_Mutation p.P196S 0.42 tolerated(0.15) benign(0.009) TCGA-D3-A8GL-06 3 77542449 77542449 C T ROBO2 Missense_Mutation p.A257V 0.43 tolerated(0.05) possibly_damaging(0.787) TCGA-D3-A8GL-06 3 77656968 77656968 G A ROBO2 Silent p.K1068K 0.56 TCGA-D3-A8GL-06 3 97167502 97167502 C T EPHA6 Missense_Mutation p.H608Y 0.49 deleterious(0) possibly_damaging(0.713) TCGA-D3-A8GL-06 3 97888402 97888402 C T OR5H15 Missense_Mutation p.P287S 0.49 deleterious(0.01) possibly_damaging(0.671) TCGA-D3-A8GL-06 3 98002390 98002390 T C OR5H2 Missense_Mutation p.L220P 0.46 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GL-06 3 98002392 98002392 A T OR5H2 Missense_Mutation p.N221Y 0.48 deleterious(0) benign(0.018) TCGA-D3-A8GL-06 3 98073148 98073148 G A OR5K4 Missense_Mutation p.A151T 0.48 tolerated(0.08) benign(0.183) TCGA-D3-A8GL-06 3 99514453 99514453 C T COL8A1 Missense_Mutation p.P570S 0.53 tolerated(0.71) unknown(0) TCGA-D3-A8GL-06 4 100062756 100062756 G A ADH4 Silent p.I66I 0.42 TCGA-D3-A8GL-06 4 100200683 100200683 C T ADH1A Missense_Mutation p.D335N 0.45 deleterious(0.03) benign(0.029) TCGA-D3-A8GL-06 4 100474956 100474956 G A TRMT10A Missense_Mutation p.H211Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GL-06 4 100512468 100512468 C T MTTP Missense_Mutation p.S193L 0.38 deleterious(0) benign(0.052) TCGA-D3-A8GL-06 4 102776251 102776251 G A BANK1 Missense_Mutation p.E177K 0.44 tolerated(0.39) benign(0.006) TCGA-D3-A8GL-06 4 103912832 103912832 C T SLC9B1 Missense_Mutation p.D13N 0.31 tolerated(0.13) benign(0.01) TCGA-D3-A8GL-06 4 106616761 106616761 G A INTS12 Missense_Mutation p.S74L 0.36 tolerated(0.06) benign(0.004) TCGA-D3-A8GL-06 4 108566005 108566005 C T PAPSS1 Missense_Mutation p.V487M 0.37 deleterious(0.01) probably_damaging(0.944) TCGA-D3-A8GL-06 4 108566141 108566141 C T PAPSS1 Silent p.E441E 0.40 TCGA-D3-A8GL-06 4 108641393 108641393 G A PAPSS1 5'UTR 0.38 TCGA-D3-A8GL-06 4 108641394 108641394 G A PAPSS1 5'UTR 0.38 TCGA-D3-A8GL-06 4 110788937 110788937 C T LRIT3 Nonsense_Mutation p.Q244* 0.37 TCGA-D3-A8GL-06 4 113568235 113568235 T A LARP7 Missense_Mutation p.F207I 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 4 115760538 115760538 G A NDST4 Missense_Mutation p.S761F 0.43 tolerated(0.37) benign(0.09) TCGA-D3-A8GL-06 4 119219927 119219927 C T PRSS12 Missense_Mutation p.D600N 0.36 deleterious(0.04) probably_damaging(0.914) TCGA-D3-A8GL-06 4 119237434 119237434 G A PRSS12 Missense_Mutation p.R399C 0.41 deleterious(0) benign(0.315) TCGA-D3-A8GL-06 4 120419763 120419763 C T PDE5A Missense_Mutation p.R874Q 0.34 tolerated_low_confidence(0.19) benign(0.181) TCGA-D3-A8GL-06 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.45 TCGA-D3-A8GL-06 4 126241593 126241593 G A FAT4 Missense_Mutation p.D1343N 0.46 probably_damaging(1) TCGA-D3-A8GL-06 4 126369633 126369633 G A FAT4 Missense_Mutation p.V2488I 0.46 possibly_damaging(0.524) TCGA-D3-A8GL-06 4 126398421 126398421 G A FAT4 Missense_Mutation p.M4135I 0.42 probably_damaging(0.977) TCGA-D3-A8GL-06 4 13338752 13338752 G A HSP90AB2P RNA 0.50 TCGA-D3-A8GL-06 4 13603930 13603930 G A BOD1L1 Missense_Mutation p.P1532S 0.41 benign(0.015) TCGA-D3-A8GL-06 4 138449706 138449706 C T PCDH18 Missense_Mutation p.R889Q 0.48 tolerated(0.06) benign(0.195) TCGA-D3-A8GL-06 4 138451129 138451129 G A PCDH18 Missense_Mutation p.S705F 0.44 deleterious(0) possibly_damaging(0.89) TCGA-D3-A8GL-06 4 147830284 147830284 C T TTC29 Silent p.A98A 0.47 TCGA-D3-A8GL-06 4 148993306 148993306 C T ARHGAP10 3'UTR 0.36 TCGA-D3-A8GL-06 4 149002435 149002435 C T NR3C2 3'UTR 0.31 TCGA-D3-A8GL-06 4 153245429 153245429 C T FBXW7 Missense_Mutation p.E588K 0.34 deleterious(0.02) possibly_damaging(0.889) TCGA-D3-A8GL-06 4 155242031 155242031 G A DCHS2 Missense_Mutation p.S1052F 0.40 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A8GL-06 4 155526034 155526034 G A FGG Silent p.H438H 0.45 TCGA-D3-A8GL-06 4 156135876 156135876 G A NPY2R Missense_Mutation p.R262Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 4 156860623 156860623 G A CTSO Missense_Mutation p.P151L 0.51 tolerated(0.18) benign(0.013) TCGA-D3-A8GL-06 4 162306986 162306986 G A FSTL5 Silent p.F819F 0.51 TCGA-D3-A8GL-06 4 162307641 162307641 G A FSTL5 Intron 0.40 TCGA-D3-A8GL-06 4 162680671 162680671 C T FSTL5 Missense_Mutation p.E207K 0.36 deleterious(0.03) benign(0.03) TCGA-D3-A8GL-06 4 162697176 162697176 C T FSTL5 Missense_Mutation p.D154N 0.48 tolerated(0.51) benign(0.068) TCGA-D3-A8GL-06 4 164246466 164246466 C T NPY1R Missense_Mutation p.E382K 0.43 tolerated_low_confidence(0.42) benign(0.292) TCGA-D3-A8GL-06 4 164247784 164247784 T C NPY1R 5'UTR 0.46 TCGA-D3-A8GL-06 4 165890702 165890702 C T TRIM61 Nonsense_Mutation p.W151* 0.28 TCGA-D3-A8GL-06 4 165961768 165961768 G A TRIM60 Missense_Mutation p.E182K 0.48 tolerated(0.12) possibly_damaging(0.788) TCGA-D3-A8GL-06 4 16597339 16597339 G A LDB2 Missense_Mutation p.P132L 0.46 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GL-06 4 166389007 166389007 G A CPE Silent p.K224K 0.51 TCGA-D3-A8GL-06 4 166915602 166915602 G A TLL1 Missense_Mutation p.R144Q 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 4 166964427 166964427 G A TLL1 Silent p.A460A 0.37 TCGA-D3-A8GL-06 4 167021941 167021941 C T TLL1 Silent p.F985F 0.37 TCGA-D3-A8GL-06 4 167675835 167675835 C T SPOCK3 Nonsense_Mutation p.W255* 0.37 TCGA-D3-A8GL-06 4 169296606 169296606 C T DDX60L Missense_Mutation p.D1519N 0.44 tolerated(0.68) benign(0.012) TCGA-D3-A8GL-06 4 170671734 170671734 G A C4orf27 Silent p.T117T 0.45 TCGA-D3-A8GL-06 4 176573054 176573054 G A GPM6A Silent p.L158L 0.47 TCGA-D3-A8GL-06 4 176733492 176733492 C T GPM6A Intron 0.44 TCGA-D3-A8GL-06 4 178262777 178262777 C T NEIL3 Missense_Mutation p.P284S 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-D3-A8GL-06 4 1808848 1808848 C T FGFR3 Silent p.Y762Y 0.33 TCGA-D3-A8GL-06 4 1808849 1808849 C T FGFR3 Silent p.L763L 0.38 TCGA-D3-A8GL-06 4 183652100 183652100 G A TENM3 Silent p.Q925Q 0.48 TCGA-D3-A8GL-06 4 183713468 183713468 C T TENM3 Silent p.F1881F 0.53 TCGA-D3-A8GL-06 4 187194279 187194279 G A F11 Silent p.R91R 0.32 TCGA-D3-A8GL-06 4 187197450 187197450 C T F11 Missense_Mutation p.P221S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 4 187540065 187540065 G A FAT1 Missense_Mutation p.P2559S 0.47 benign(0.297) TCGA-D3-A8GL-06 4 188924392 188924392 C T ZFP42 Missense_Mutation p.S144F 0.34 deleterious(0) possibly_damaging(0.781) TCGA-D3-A8GL-06 4 189026535 189026535 C T TRIML2 5'UTR 0.46 TCGA-D3-A8GL-06 4 26387972 26387972 C T RBPJ Intron 0.38 TCGA-D3-A8GL-06 4 2674019 2674019 C T FAM193A Missense_Mutation p.P460S 0.38 tolerated(0.07) probably_damaging(0.994) TCGA-D3-A8GL-06 4 26997110 26997110 C A STIM2 Silent p.P169P 0.52 TCGA-D3-A8GL-06 4 27019512 27019512 C T STIM2 Missense_Mutation p.P565S 0.42 tolerated(0.06) benign(0.355) TCGA-D3-A8GL-06 4 3449884 3449884 G A HGFAC Missense_Mutation p.E556K 0.64 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 4 3495130 3495130 G A DOK7 Missense_Mutation p.E473K 0.50 tolerated_low_confidence(0.11) benign(0.018) TCGA-D3-A8GL-06 4 40776943 40776943 C T NSUN7 Silent p.F267F 0.44 TCGA-D3-A8GL-06 4 42122220 42122220 C T BEND4 Missense_Mutation p.R413Q 0.41 deleterious_low_confidence(0.04) probably_damaging(0.968) TCGA-D3-A8GL-06 4 42457541 42457541 C T ATP8A1 Splice_Site p.X898_splice 0.44 TCGA-D3-A8GL-06 4 46125900 46125900 G A GABRG1 Missense_Mutation p.P11S 0.47 tolerated_low_confidence(0.18) possibly_damaging(0.857) TCGA-D3-A8GL-06 4 47680049 47680049 C T CORIN Silent p.V385V 0.39 TCGA-D3-A8GL-06 4 47938338 47938338 C T CNGA1 3'UTR 0.58 TCGA-D3-A8GL-06 4 47953385 47953385 C A CNGA1 Missense_Mutation p.G143V 0.42 tolerated_low_confidence(0.07) benign(0.347) TCGA-D3-A8GL-06 4 48069590 48069590 G A TXK 3'UTR 0.39 TCGA-D3-A8GL-06 4 48082009 48082009 C T TXK Missense_Mutation p.E365K 0.37 tolerated(0.69) benign(0.113) TCGA-D3-A8GL-06 4 49034724 49034724 G A CWH43 Silent p.G550G 0.45 TCGA-D3-A8GL-06 4 501321 501321 G A PIGG Missense_Mutation p.G233E 0.40 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A8GL-06 4 54968063 54968063 G A GSX2 Missense_Mutation p.D297N 0.34 deleterious(0) benign(0.107) TCGA-D3-A8GL-06 4 59340 59340 G A ZNF595 Silent p.R7R 0.07 TCGA-D3-A8GL-06 4 62849173 62849173 G A LPHN3 Missense_Mutation p.G962R 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 4 6473915 6473915 G A PPP2R2C Silent p.F14F 0.41 TCGA-D3-A8GL-06 4 65175561 65175561 A G TECRL Silent p.L214L 0.45 TCGA-D3-A8GL-06 4 69433941 69433941 C T UGT2B17 Missense_Mutation p.D88N 0.45 tolerated(0.89) benign(0.008) TCGA-D3-A8GL-06 4 69682079 69682079 C T UGT2B10 Silent p.I114I 0.31 TCGA-D3-A8GL-06 4 69798423 69798423 G A UGT2A3 Silent p.L307L 0.42 TCGA-D3-A8GL-06 4 70152558 70152558 G A UGT2B28 Missense_Mutation p.R320K 0.46 tolerated(0.94) benign(0.064) TCGA-D3-A8GL-06 4 70160337 70160337 T G UGT2B28 Missense_Mutation p.V467G 0.51 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 4 70346573 70346573 G A UGT2B4 Missense_Mutation p.P456S 0.32 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GL-06 4 70504786 70504786 G A UGT2A2 Silent p.H191H 0.33 TCGA-D3-A8GL-06 4 70707726 70707726 G A SULT1E1 Nonsense_Mutation p.R291* 0.49 TCGA-D3-A8GL-06 4 71346973 71346973 C T MUC7 Missense_Mutation p.T171I 0.43 tolerated(0.08) unknown(0) TCGA-D3-A8GL-06 4 71629300 71629300 C T RUFY3 Silent p.S128S 0.42 TCGA-D3-A8GL-06 4 73013581 73013581 C T NPFFR2 3'UTR 0.40 TCGA-D3-A8GL-06 4 74279218 74279218 G A ALB Missense_Mutation p.E309K 0.51 deleterious(0.04) benign(0.3) TCGA-D3-A8GL-06 4 74352708 74352708 G A AFM Silent p.R169R 0.37 TCGA-D3-A8GL-06 4 7436084 7436084 G A PSAPL1 Missense_Mutation p.P175S 0.40 deleterious(0) possibly_damaging(0.755) TCGA-D3-A8GL-06 4 74853241 74853241 C T PPBP Missense_Mutation p.E93K 0.39 deleterious(0) possibly_damaging(0.766) TCGA-D3-A8GL-06 4 75250454 75250454 C T EREG Nonsense_Mutation p.R147* 0.43 TCGA-D3-A8GL-06 4 75250464 75250464 A T EREG Missense_Mutation p.K150I 0.40 deleterious(0.02) possibly_damaging(0.509) TCGA-D3-A8GL-06 4 75312331 75312331 G A AREG Missense_Mutation p.G48R 0.45 deleterious(0.04) benign(0.178) TCGA-D3-A8GL-06 4 75482086 75482086 G A AREGB Missense_Mutation p.G48R 0.47 deleterious(0.04) benign(0.178) TCGA-D3-A8GL-06 4 75937755 75937755 C T PARM1 Missense_Mutation p.S55F 0.49 tolerated(0.08) possibly_damaging(0.804) TCGA-D3-A8GL-06 4 76956230 76956230 G A CXCL11 Silent p.P77P 0.47 TCGA-D3-A8GL-06 4 77231079 77231079 G A FAM47E-STBD1 Missense_Mutation p.E335K 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 4 77661385 77661385 G A SHROOM3 Missense_Mutation p.G687S 0.52 tolerated(0.2) benign(0.001) TCGA-D3-A8GL-06 4 77816557 77816557 C T SOWAHB 3'UTR 0.44 TCGA-D3-A8GL-06 4 79372965 79372965 G A FRAS1 Missense_Mutation p.G2168E 0.26 probably_damaging(1) TCGA-D3-A8GL-06 4 79372966 79372966 G A FRAS1 Silent p.G2168G 0.26 TCGA-D3-A8GL-06 4 79385678 79385678 G A FRAS1 Missense_Mutation p.E2324K 0.59 benign(0.242) TCGA-D3-A8GL-06 4 79793870 79793870 T C BMP2K Missense_Mutation p.F571L 0.46 tolerated_low_confidence(0.1) unknown(0) TCGA-D3-A8GL-06 4 8009812 8009812 C T ABLIM2 Missense_Mutation p.R531K 0.32 tolerated(0.5) benign(0.001) TCGA-D3-A8GL-06 4 81967521 81967521 G A BMP3 Missense_Mutation p.E316K 0.38 deleterious(0.03) benign(0.057) TCGA-D3-A8GL-06 4 82027018 82027018 A T PRKG2 Missense_Mutation p.F671Y 0.48 deleterious(0.01) possibly_damaging(0.778) TCGA-D3-A8GL-06 4 83276480 83276480 G A HNRNPD 3'UTR 0.35 TCGA-D3-A8GL-06 4 83860867 83860867 G A LIN54 Missense_Mutation p.P422L 0.45 tolerated(0.07) benign(0.034) TCGA-D3-A8GL-06 4 84350695 84350695 C T HELQ Missense_Mutation p.G834R 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 4 85672714 85672714 G A WDFY3 Silent p.F1965F 0.43 TCGA-D3-A8GL-06 4 88533296 88533296 T A DSPP Missense_Mutation p.S31T 0.33 possibly_damaging(0.519) TCGA-D3-A8GL-06 4 88731792 88731792 C T IBSP Missense_Mutation p.S94L 0.42 tolerated(0.21) benign(0.255) TCGA-D3-A8GL-06 4 88967811 88967811 C T PKD2 Missense_Mutation p.P446L 0.47 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 4 89199466 89199466 G A PPM1K Silent p.I90I 0.47 TCGA-D3-A8GL-06 4 91549375 91549375 C T CCSER1 Missense_Mutation p.L642F 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 4 94006369 94006369 C T GRID2 Silent p.I156I 0.51 TCGA-D3-A8GL-06 4 95539170 95539170 T C PDLIM5 Silent p.P341P 0.40 TCGA-D3-A8GL-06 4 96761977 96761977 G A PDHA2 Missense_Mutation p.G226R 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GL-06 4 96762304 96762304 G A PDHA2 Missense_Mutation p.E335K 0.35 tolerated(0.49) possibly_damaging(0.702) TCGA-D3-A8GL-06 4 9784258 9784258 C T DRD5 Missense_Mutation p.P202L 0.44 tolerated(0.08) benign(0.026) TCGA-D3-A8GL-06 5 100147413 100147413 G A ST8SIA4 3'UTR 0.47 TCGA-D3-A8GL-06 5 110439932 110439932 C T WDR36 Silent p.L319L 0.46 TCGA-D3-A8GL-06 5 113798779 113798779 C T KCNN2 Silent p.F345F 0.49 TCGA-D3-A8GL-06 5 114861177 114861177 T C FEM1C Missense_Mutation p.N228D 0.53 tolerated(0.4) benign(0.129) TCGA-D3-A8GL-06 5 114861178 114861178 T A FEM1C Silent p.T227T 0.53 TCGA-D3-A8GL-06 5 118965458 118965458 G A FAM170A 5'UTR 0.41 TCGA-D3-A8GL-06 5 118969672 118969672 C T FAM170A Nonsense_Mutation p.R77* 0.57 TCGA-D3-A8GL-06 5 121787100 121787100 C T SNCAIP Missense_Mutation p.S853L 0.47 tolerated(0.12) benign(0.102) TCGA-D3-A8GL-06 5 134303756 134303756 T C CATSPER3 Silent p.F25F 0.44 TCGA-D3-A8GL-06 5 135392391 135392391 G A TGFBI Missense_Mutation p.E529K 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GL-06 5 137766090 137766090 C T KDM3B Silent p.F1682F 0.39 TCGA-D3-A8GL-06 5 13776741 13776741 G A DNAH5 Silent p.F3060F 0.48 TCGA-D3-A8GL-06 5 13820500 13820500 C T DNAH5 Missense_Mutation p.A2266T 0.64 possibly_damaging(0.787) TCGA-D3-A8GL-06 5 138661232 138661232 C T MATR3 Missense_Mutation p.A751V 0.56 tolerated(0.08) benign(0.001) TCGA-D3-A8GL-06 5 13868026 13868026 A G DNAH5 Missense_Mutation p.Y1304H 0.43 benign(0.403) TCGA-D3-A8GL-06 5 138749870 138749870 A G DNAJC18 Silent p.L348L 0.42 TCGA-D3-A8GL-06 5 140166257 140166257 G A PCDHA1 Missense_Mutation p.D128N 0.47 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D3-A8GL-06 5 140167987 140167987 C T PCDHA1 Silent p.I704I 0.42 TCGA-D3-A8GL-06 5 140176127 140176127 G A PCDHA2 Silent p.E526E 0.50 TCGA-D3-A8GL-06 5 140176128 140176128 G A PCDHA2 Missense_Mutation p.E527K 0.50 deleterious_low_confidence(0.03) possibly_damaging(0.68) TCGA-D3-A8GL-06 5 140182649 140182649 C T PCDHA3 Missense_Mutation p.R623C 0.39 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-D3-A8GL-06 5 140209800 140209800 C T PCDHA6 Silent p.S708S 0.49 TCGA-D3-A8GL-06 5 140229244 140229244 C T PCDHA9 Silent p.S388S 0.42 TCGA-D3-A8GL-06 5 140236503 140236503 G A PCDHA10 Silent p.R290R 0.47 TCGA-D3-A8GL-06 5 140249949 140249949 G A PCDHA11 Missense_Mutation p.E421K 0.50 tolerated_low_confidence(0.34) benign(0.107) TCGA-D3-A8GL-06 5 140264221 140264221 G A PCDHA13 Missense_Mutation p.E790K 0.50 tolerated_low_confidence(0.34) benign(0.014) TCGA-D3-A8GL-06 5 140307067 140307067 C T PCDHAC1 Missense_Mutation p.A197V 0.48 tolerated(0.18) benign(0.262) TCGA-D3-A8GL-06 5 140308275 140308275 A G PCDHAC1 Missense_Mutation p.I600V 0.50 tolerated(0.3) benign(0.219) TCGA-D3-A8GL-06 5 140347185 140347185 G A PCDHAC2 Silent p.K278K 0.54 TCGA-D3-A8GL-06 5 140431501 140431501 G A PCDHB1 Missense_Mutation p.G149D 0.41 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 5 140432590 140432590 G A PCDHB1 Missense_Mutation p.G512E 0.52 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 5 140503962 140503962 C T PCDHB4 Silent p.F794F 0.49 TCGA-D3-A8GL-06 5 140564188 140564188 C T PCDHB16 Missense_Mutation p.S685L 0.42 tolerated_low_confidence(0.22) benign(0.001) TCGA-D3-A8GL-06 5 140573554 140573554 G A PCDHB10 Missense_Mutation p.D477N 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GL-06 5 140593870 140593870 G A PCDHB13 Missense_Mutation p.E59K 0.16 deleterious_low_confidence(0.05) benign(0.424) TCGA-D3-A8GL-06 5 140604212 140604212 G A PCDHB14 Missense_Mutation p.G379R 0.47 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GL-06 5 140698865 140698865 C T TAF7 Silent p.T249T 0.38 TCGA-D3-A8GL-06 5 140772447 140772447 C T PCDHGA8 Silent p.L23L 0.56 TCGA-D3-A8GL-06 5 140801597 140801597 C G PCDHGA11 Missense_Mutation p.T268R 0.43 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-D3-A8GL-06 5 140958129 140958129 G A DIAPH1 Missense_Mutation p.H333Y 0.47 unknown(0) TCGA-D3-A8GL-06 5 141019572 141019572 G A RELL2 Missense_Mutation p.G197R 0.57 deleterious(0) possibly_damaging(0.904) TCGA-D3-A8GL-06 5 141051206 141051206 G A ARAP3 Silent p.S595S 0.30 TCGA-D3-A8GL-06 5 141520182 141520182 T - NDFIP1 Frame_Shift_Del p.F184Sfs*4 0.25 TCGA-D3-A8GL-06 5 143853695 143853695 G A KCTD16 3'UTR 0.55 TCGA-D3-A8GL-06 5 145379738 145379738 G A SH3RF2 Missense_Mutation p.E166K 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GL-06 5 145435560 145435560 C T SH3RF2 Missense_Mutation p.P447S 0.49 tolerated(1) benign(0.135) TCGA-D3-A8GL-06 5 14692983 14692983 C T FAM105B Silent p.A295A 0.46 TCGA-D3-A8GL-06 5 147480126 147480126 C T SPINK5 Missense_Mutation p.S401F 0.46 tolerated(0.18) benign(0.328) TCGA-D3-A8GL-06 5 147513422 147513422 G A SPINK5 Missense_Mutation p.G1083E 0.35 tolerated(1) benign(0.001) TCGA-D3-A8GL-06 5 149210432 149210432 C G PPARGC1B Missense_Mutation p.R190G 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 5 149576337 149576337 C T SLC6A7 Silent p.F92F 0.45 TCGA-D3-A8GL-06 5 150050098 150050098 G A MYOZ3 Missense_Mutation p.M38I 0.37 tolerated(1) benign(0.006) TCGA-D3-A8GL-06 5 150322122 150322122 C T ZNF300P1 RNA 0.30 TCGA-D3-A8GL-06 5 150407048 150407048 G A GPX3 Missense_Mutation p.D139N 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A8GL-06 5 150856181 150856181 C T SLC36A1 Missense_Mutation p.P285S 0.36 tolerated(0.16) benign(0.113) TCGA-D3-A8GL-06 5 151771854 151771854 G A NMUR2 Silent p.F382F 0.54 TCGA-D3-A8GL-06 5 151775058 151775058 G A NMUR2 Missense_Mutation p.S300F 0.41 tolerated(0.72) possibly_damaging(0.83) TCGA-D3-A8GL-06 5 151784282 151784282 G A NMUR2 Silent p.F131F 0.41 TCGA-D3-A8GL-06 5 153077699 153077699 C T GRIA1 Silent p.I420I 0.39 TCGA-D3-A8GL-06 5 154193450 154193450 C T LARP1 Missense_Mutation p.P952S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GL-06 5 154311082 154311082 A G GEMIN5 Silent p.G239G 0.34 TCGA-D3-A8GL-06 5 158710331 158710331 C T UBLCP1 Missense_Mutation p.H305Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 5 16091013 16091013 C T MARCH11 Missense_Mutation p.D291N 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GL-06 5 161300259 161300259 G A GABRA1 Missense_Mutation p.G131E 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 5 161324132 161324132 G A GABRA1 Missense_Mutation p.D359N 0.42 tolerated(0.32) benign(0.381) TCGA-D3-A8GL-06 5 16668401 16668401 G A MYO10 Silent p.L2020L 0.45 TCGA-D3-A8GL-06 5 168119694 168119694 C T SLIT3 Missense_Mutation p.D1032N 0.54 deleterious(0.03) possibly_damaging(0.691) TCGA-D3-A8GL-06 5 168139348 168139348 C T SLIT3 Missense_Mutation p.G832D 0.51 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 5 168189548 168189548 C T SLIT3 Missense_Mutation p.D536N 0.44 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GL-06 5 171509443 171509443 T A STK10 Nonsense_Mutation p.K626* 0.40 TCGA-D3-A8GL-06 5 175110390 175110390 C T HRH2 Silent p.L52L 0.51 TCGA-D3-A8GL-06 5 175526038 175526038 C T FAM153B Silent p.I107I 0.47 TCGA-D3-A8GL-06 5 175535627 175535627 G A FAM153B Silent p.E217E 0.40 TCGA-D3-A8GL-06 5 175933981 175933981 C T FAF2 3'UTR 0.51 TCGA-D3-A8GL-06 5 176004548 176004548 C G CDHR2 Missense_Mutation p.A448G 0.67 tolerated(0.13) benign(0.051) TCGA-D3-A8GL-06 5 176522676 176522676 C T FGFR4 Silent p.S591S 0.47 TCGA-D3-A8GL-06 5 176631124 176631124 C T NSD1 Missense_Mutation p.S356F 0.31 tolerated(0.06) probably_damaging(0.922) TCGA-D3-A8GL-06 5 179192636 179192636 C T MAML1 Missense_Mutation p.P209S 0.46 tolerated(0.82) benign(0.003) TCGA-D3-A8GL-06 5 180218874 180218874 G T MGAT1 Silent p.P366P 0.37 TCGA-D3-A8GL-06 5 19591261 19591261 C T CDH18 Missense_Mutation p.D302N 0.42 deleterious(0.01) possibly_damaging(0.709) TCGA-D3-A8GL-06 5 26881162 26881162 C T CDH9 3'UTR 0.47 TCGA-D3-A8GL-06 5 26881493 26881493 C T CDH9 Missense_Mutation p.E708K 0.39 tolerated(0.21) possibly_damaging(0.622) TCGA-D3-A8GL-06 5 31267682 31267682 G T CDH6 Missense_Mutation p.K34N 0.39 tolerated(0.48) benign(0.001) TCGA-D3-A8GL-06 5 33588881 33588881 C T ADAMTS12 Silent p.A896A 0.52 TCGA-D3-A8GL-06 5 33588889 33588889 A C ADAMTS12 Missense_Mutation p.C894G 0.44 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GL-06 5 35014100 35014100 G T AGXT2 Missense_Mutation p.T363N 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 5 35068359 35068359 G A PRLR Missense_Mutation p.P272S 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 5 35072741 35072741 T A PRLR Missense_Mutation p.K160I 0.45 deleterious(0) benign(0.172) TCGA-D3-A8GL-06 5 37198889 37198891 AGG - C5orf42 In_Frame_Del p.L1197del 0.08 TCGA-D3-A8GL-06 5 37701233 37701233 C T WDR70 Silent p.T422T 0.41 TCGA-D3-A8GL-06 5 38463945 38463945 G A EGFLAM Missense_Mutation p.E971K 0.48 tolerated(0.09) probably_damaging(0.992) TCGA-D3-A8GL-06 5 38510687 38510687 G A LIFR Silent p.I290I 0.55 TCGA-D3-A8GL-06 5 40964846 40964846 G A C7 Missense_Mutation p.E585K 0.39 tolerated(0.78) benign(0.013) TCGA-D3-A8GL-06 5 41005013 41005013 C T MROH2B Missense_Mutation p.E1292K 0.48 deleterious(0.04) possibly_damaging(0.891) TCGA-D3-A8GL-06 5 41032923 41032923 C T MROH2B Missense_Mutation p.D788N 0.40 deleterious(0.04) possibly_damaging(0.8) TCGA-D3-A8GL-06 5 41058294 41058294 G A MROH2B Silent p.I209I 0.50 TCGA-D3-A8GL-06 5 41061778 41061778 C T MROH2B Missense_Mutation p.R170K 0.41 tolerated(0.34) benign(0.005) TCGA-D3-A8GL-06 5 41149459 41149459 G A C6 Missense_Mutation p.S836F 0.38 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GL-06 5 41195973 41195973 C T C6 Missense_Mutation p.E170K 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 5 41201730 41201730 C T C6 Missense_Mutation p.R77K 0.45 tolerated(0.26) benign(0) TCGA-D3-A8GL-06 5 42695076 42695076 G A GHR Silent p.G108G 0.43 TCGA-D3-A8GL-06 5 43280122 43280122 A C NIM1K Missense_Mutation p.N201T 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 5 45262243 45262243 G A HCN1 Missense_Mutation p.P818L 0.48 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-D3-A8GL-06 5 50117122 50117122 C T PARP8 Missense_Mutation p.P582S 0.46 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 5 54404205 54404205 G A GZMA Missense_Mutation p.G204R 0.39 tolerated(0.13) possibly_damaging(0.689) TCGA-D3-A8GL-06 5 55083780 55083780 G A DDX4 Missense_Mutation p.R375Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 5 58021899 58021899 T A RAB3C Nonsense_Mutation p.L108* 0.47 TCGA-D3-A8GL-06 5 6337335 6337335 G A CTD-2324F15.2 RNA 0.44 TCGA-D3-A8GL-06 5 64079755 64079755 C T CWC27 Silent p.F115F 0.45 TCGA-D3-A8GL-06 5 64084821 64084821 G A CWC27 Missense_Mutation p.E215K 0.38 deleterious(0) benign(0.103) TCGA-D3-A8GL-06 5 66426038 66426038 G A MAST4 Silent p.G582G 0.52 TCGA-D3-A8GL-06 5 66479258 66479258 G A CD180 Silent p.L471L 0.53 TCGA-D3-A8GL-06 5 68581278 68581278 C T CCDC125 Silent p.R372R 0.48 TCGA-D3-A8GL-06 5 74041656 74041656 G A GFM2 Silent p.F232F 0.34 TCGA-D3-A8GL-06 5 75896755 75896755 C T IQGAP2 Missense_Mutation p.P397L 0.41 deleterious(0.02) possibly_damaging(0.691) TCGA-D3-A8GL-06 5 75913433 75913433 G A F2RL2 Missense_Mutation p.H367Y 0.45 deleterious(0.04) benign(0.116) TCGA-D3-A8GL-06 5 75979704 75979704 G A IQGAP2 Silent p.E1289E 0.43 TCGA-D3-A8GL-06 5 78384434 78384434 G A BHMT2 3'UTR 0.41 TCGA-D3-A8GL-06 5 79355639 79355639 C T THBS4 Nonsense_Mutation p.Q300* 0.52 TCGA-D3-A8GL-06 5 79854245 79854245 T C ANKRD34B 3'UTR 0.52 TCGA-D3-A8GL-06 5 80655690 80655690 G A ACOT12 Intron 0.40 TCGA-D3-A8GL-06 5 82868277 82868277 T A VCAN Missense_Mutation p.S3260T 0.52 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GL-06 5 82940384 82940384 G A HAPLN1 Silent p.F191F 0.41 TCGA-D3-A8GL-06 5 89949510 89949510 G A GPR98 Silent p.A1373A 0.39 TCGA-D3-A8GL-06 5 89986799 89986799 G A GPR98 Missense_Mutation p.E2298K 0.44 possibly_damaging(0.636) TCGA-D3-A8GL-06 5 90103463 90103463 C T GPR98 Silent p.L4961L 0.32 TCGA-D3-A8GL-06 5 90136447 90136447 C T GPR98 Missense_Mutation p.S5555F 0.53 possibly_damaging(0.831) TCGA-D3-A8GL-06 5 9337832 9337832 C T SEMA5A Missense_Mutation p.G73R 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 5 93856010 93856010 G A KIAA0825 Missense_Mutation p.R305C 0.38 tolerated(0.2) possibly_damaging(0.799) TCGA-D3-A8GL-06 5 9629476 9629476 G A TAS2R1 Silent p.P223P 0.50 TCGA-D3-A8GL-06 6 100838485 100838485 G A SIM1 Missense_Mutation p.H685Y 0.90 tolerated_low_confidence(0.31) benign(0.099) TCGA-D3-A8GL-06 6 100841659 100841659 C T SIM1 Missense_Mutation p.R425K 0.83 tolerated(0.56) benign(0.182) TCGA-D3-A8GL-06 6 101103625 101103625 G A ASCC3 Missense_Mutation p.R925W 0.89 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 6 106967344 106967344 C T AIM1 Missense_Mutation p.T346I 0.91 tolerated_low_confidence(0.37) benign(0.002) TCGA-D3-A8GL-06 6 109480602 109480602 C T CEP57L1 Missense_Mutation p.S318F 0.82 deleterious(0) probably_damaging(0.91) TCGA-D3-A8GL-06 6 11010982 11010982 G C ELOVL2 Missense_Mutation p.R22G 0.58 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 6 110763755 110763755 G A SLC22A16 Missense_Mutation p.P292L 0.89 deleterious(0.03) probably_damaging(0.914) TCGA-D3-A8GL-06 6 117127686 117127686 C T GPRC6A Silent p.R394R 0.92 TCGA-D3-A8GL-06 6 117252563 117252563 C T RFX6 Missense_Mutation p.P894L 0.83 deleterious_low_confidence(0.02) benign(0.04) TCGA-D3-A8GL-06 6 117681004 117681004 G A ROS1 Missense_Mutation p.L1206F 0.79 tolerated(0.14) benign(0.049) TCGA-D3-A8GL-06 6 11778905 11778905 C T ADTRP Missense_Mutation p.D30N 0.22 tolerated(0.17) benign(0.017) TCGA-D3-A8GL-06 6 12296435 12296435 C T EDN1 3'UTR 0.35 TCGA-D3-A8GL-06 6 127770976 127770976 T C KIAA0408 Missense_Mutation p.N190S 0.88 deleterious(0.04) benign(0.098) TCGA-D3-A8GL-06 6 127898528 127898528 C T C6orf58 Silent p.I66I 0.93 TCGA-D3-A8GL-06 6 127912821 127912821 C T C6orf58 3'UTR 0.79 TCGA-D3-A8GL-06 6 128319873 128319873 C T PTPRK Missense_Mutation p.E891K 0.83 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 6 135239870 135239870 C T ALDH8A1 Missense_Mutation p.D383N 0.86 tolerated(0.18) possibly_damaging(0.461) TCGA-D3-A8GL-06 6 138584050 138584050 C T KIAA1244 Missense_Mutation p.A477V 0.73 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GL-06 6 138655786 138655786 G A KIAA1244 Missense_Mutation p.D1935N 0.81 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A8GL-06 6 143818506 143818506 A G FUCA2 Intron 0.86 TCGA-D3-A8GL-06 6 144081755 144081755 C T PHACTR2 Silent p.S224S 0.63 TCGA-D3-A8GL-06 6 144262841 144262841 T C PLAGL1 Missense_Mutation p.N371S 0.88 tolerated(0.66) benign(0.123) TCGA-D3-A8GL-06 6 146127414 146127414 G A FBXO30 Missense_Mutation p.S43F 0.87 deleterious(0.03) possibly_damaging(0.701) TCGA-D3-A8GL-06 6 149854686 149854686 C T PPIL4 Missense_Mutation p.E196K 0.90 tolerated(0.46) benign(0.024) TCGA-D3-A8GL-06 6 149855852 149855852 G A PPIL4 Missense_Mutation p.P175S 0.79 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 6 149953903 149953903 A G KATNA1 Silent p.V104V 0.88 TCGA-D3-A8GL-06 6 151152795 151152795 G A PLEKHG1 Missense_Mutation p.E850K 0.96 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GL-06 6 152651776 152651776 A G SYNE1 Silent p.L4682L 0.80 TCGA-D3-A8GL-06 6 152779954 152779954 C T SYNE1 Missense_Mutation p.E836K 0.93 possibly_damaging(0.733) TCGA-D3-A8GL-06 6 152847225 152847225 C T SYNE1 Missense_Mutation p.G72E 0.95 probably_damaging(0.983) TCGA-D3-A8GL-06 6 153296635 153296635 G A FBXO5 Silent p.T75T 0.86 TCGA-D3-A8GL-06 6 160638506 160638506 C T SLC22A2 Missense_Mutation p.M542I 0.85 tolerated(0.23) benign(0.001) TCGA-D3-A8GL-06 6 167704903 167704903 C T UNC93A 5'UTR 0.90 TCGA-D3-A8GL-06 6 169617819 169617819 G A THBS2 3'UTR 1.00 TCGA-D3-A8GL-06 6 169617820 169617820 T A THBS2 3'UTR 1.00 TCGA-D3-A8GL-06 6 20402686 20402686 C T E2F3 Nonsense_Mutation p.Q75* 0.25 TCGA-D3-A8GL-06 6 24145813 24145813 G A NRSN1 Missense_Mutation p.G76E 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 6 24358083 24358083 G A KAAG1 Silent p.T72T 0.60 TCGA-D3-A8GL-06 6 24445991 24445991 G A GPLD1 Missense_Mutation p.P630L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 6 24454258 24454258 G A GPLD1 Silent p.I440I 0.27 TCGA-D3-A8GL-06 6 24566932 24566932 G A KIAA0319 Missense_Mutation p.L729F 0.32 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GL-06 6 25689416 25689416 G A SCGN Missense_Mutation p.E182K 0.49 deleterious(0.01) benign(0.175) TCGA-D3-A8GL-06 6 25850384 25850384 G A SLC17A3 Missense_Mutation p.P339S 0.68 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A8GL-06 6 25855430 25855430 G A SLC17A3 Silent p.I218I 0.30 TCGA-D3-A8GL-06 6 27419785 27419785 T A ZNF184 Missense_Mutation p.N518I 0.59 tolerated(0.47) benign(0.258) TCGA-D3-A8GL-06 6 27925928 27925928 T C OR2B6 Silent p.L304L 0.62 TCGA-D3-A8GL-06 6 28053451 28053451 G A ZNF165 Missense_Mutation p.E65K 0.68 deleterious(0.01) benign(0.345) TCGA-D3-A8GL-06 6 28327542 28327542 C T ZKSCAN3 Missense_Mutation p.P60L 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 6 29012141 29012141 C T OR2W1 Missense_Mutation p.G271D 0.68 deleterious(0.04) possibly_damaging(0.907) TCGA-D3-A8GL-06 6 29012353 29012353 G A OR2W1 Silent p.F200F 0.25 TCGA-D3-A8GL-06 6 29080554 29080554 G A OR2J3 Missense_Mutation p.R296K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GL-06 6 29274656 29274656 C T OR14J1 Missense_Mutation p.L64F 0.32 deleterious(0) benign(0.32) TCGA-D3-A8GL-06 6 29976361 29976361 G A ZNRD1-AS1 Intron 0.44 TCGA-D3-A8GL-06 6 30864609 30864609 C T DDR1 Silent p.F612F 0.34 TCGA-D3-A8GL-06 6 31132607 31132607 C T POU5F1 Missense_Mutation p.G285D 0.41 deleterious(0.04) possibly_damaging(0.752) TCGA-D3-A8GL-06 6 31556565 31556565 C T LST1 3'UTR 0.29 TCGA-D3-A8GL-06 6 31827819 31827819 G A NEU1 Nonsense_Mutation p.R341* 0.33 TCGA-D3-A8GL-06 6 34003844 34003844 G A GRM4 Silent p.F681F 0.36 TCGA-D3-A8GL-06 6 34026779 34026779 C T GRM4 Silent p.T333T 0.21 TCGA-D3-A8GL-06 6 350669 350669 C T DUSP22 Intron 0.19 TCGA-D3-A8GL-06 6 35210867 35210867 G A SCUBE3 Missense_Mutation p.R588K 0.59 tolerated(0.24) benign(0.007) TCGA-D3-A8GL-06 6 35260672 35260672 G A ZNF76 Missense_Mutation p.E394K 0.49 tolerated(0.39) benign(0.004) TCGA-D3-A8GL-06 6 35471566 35471566 C T TULP1 Missense_Mutation p.G391E 0.33 deleterious(0.01) probably_damaging(0.939) TCGA-D3-A8GL-06 6 35587958 35587958 G A FKBP5 Missense_Mutation p.S115L 0.62 tolerated(0.19) benign(0.003) TCGA-D3-A8GL-06 6 36261966 36261966 G A PNPLA1 Splice_Site p.X169_splice 0.27 TCGA-D3-A8GL-06 6 36922521 36922521 G A PI16 5'UTR 0.14 TCGA-D3-A8GL-06 6 37605969 37605969 C T MDGA1 Intron 0.68 TCGA-D3-A8GL-06 6 38790611 38790611 C T DNAH8 Intron 0.61 TCGA-D3-A8GL-06 6 38791380 38791380 G A DNAH8 Missense_Mutation p.E1038K 0.66 benign(0.013) TCGA-D3-A8GL-06 6 38862525 38862525 C T DNAH8 Nonsense_Mutation p.R2661* 0.26 TCGA-D3-A8GL-06 6 38885060 38885060 C T DNAH8 Missense_Mutation p.P3179S 0.60 probably_damaging(1) TCGA-D3-A8GL-06 6 38891888 38891888 C T DNAH8 Missense_Mutation p.P3421S 0.31 probably_damaging(0.973) TCGA-D3-A8GL-06 6 38980319 38980319 C T DNAH8 Silent p.F4323F 0.64 TCGA-D3-A8GL-06 6 39159409 39159409 G A KCNK5 Missense_Mutation p.H253Y 0.66 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GL-06 6 40359821 40359821 G A LRFN2 Missense_Mutation p.P744L 0.70 tolerated(0.33) benign(0.015) TCGA-D3-A8GL-06 6 4087714 4087714 C T C6orf201 5'UTR 0.27 TCGA-D3-A8GL-06 6 4087715 4087715 C T C6orf201 5'UTR 0.26 TCGA-D3-A8GL-06 6 42647504 42647504 C T UBR2 Missense_Mutation p.S1551F 0.59 deleterious(0) benign(0.372) TCGA-D3-A8GL-06 6 43160847 43160847 G C CUL9 Missense_Mutation p.E763D 0.58 tolerated(0.52) benign(0.376) TCGA-D3-A8GL-06 6 43214436 43214436 A G TTBK1 Missense_Mutation p.N13S 0.58 benign(0.213) TCGA-D3-A8GL-06 6 43273469 43273469 G A CRIP3 3'UTR 0.23 TCGA-D3-A8GL-06 6 44273479 44273479 G A AARS2 Missense_Mutation p.P449S 0.69 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GL-06 6 44361293 44361293 C T CDC5L Missense_Mutation p.P141L 0.56 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GL-06 6 46826013 46826013 C T GPR116 Silent p.Q1209Q 0.31 TCGA-D3-A8GL-06 6 46834747 46834747 A C GPR116 Missense_Mutation p.S583R 0.62 tolerated(0.33) benign(0.001) TCGA-D3-A8GL-06 6 47847331 47847331 G A PTCHD4 Missense_Mutation p.R417C 0.38 tolerated(0.06) probably_damaging(0.995) TCGA-D3-A8GL-06 6 49754640 49754640 G A PGK2 Silent p.S87S 0.64 TCGA-D3-A8GL-06 6 51735410 51735410 T A PKHD1 Nonsense_Mutation p.K2460* 0.57 TCGA-D3-A8GL-06 6 52141126 52141126 G A MCM3 Silent p.I483I 0.58 TCGA-D3-A8GL-06 6 52334254 52334254 C T EFHC1 Missense_Mutation p.R421C 0.57 deleterious(0.01) probably_damaging(0.909) TCGA-D3-A8GL-06 6 53767426 53767426 G A LRRC1 Splice_Site p.X263_splice 0.24 TCGA-D3-A8GL-06 6 54805160 54805160 G A FAM83B Missense_Mutation p.R464Q 0.63 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 6 55922373 55922373 G A COL21A1 3'UTR 0.57 TCGA-D3-A8GL-06 6 55924878 55924878 C T COL21A1 Missense_Mutation p.G849E 0.28 deleterious(0) possibly_damaging(0.65) TCGA-D3-A8GL-06 6 6248649 6248649 C T F13A1 Missense_Mutation p.E232K 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-D3-A8GL-06 6 63990398 63990398 G A LGSN Missense_Mutation p.A353V 0.92 deleterious(0.01) possibly_damaging(0.77) TCGA-D3-A8GL-06 6 70064197 70064197 C T BAI3 Missense_Mutation p.P1178S 0.98 deleterious(0.02) benign(0.038) TCGA-D3-A8GL-06 6 70847595 70847595 G A COL19A1 Missense_Mutation p.G468R 0.81 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GL-06 6 70866574 70866574 G A COL19A1 Missense_Mutation p.E751K 0.75 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 6 70950429 70950429 G A COL9A1 Missense_Mutation p.S681F 0.79 probably_damaging(0.927) TCGA-D3-A8GL-06 6 72678707 72678707 G A RIMS1 Silent p.A62A 0.87 TCGA-D3-A8GL-06 6 72809677 72809677 G A RIMS1 Splice_Site p.X154_splice 0.89 TCGA-D3-A8GL-06 6 7580796 7580796 G A DSP Missense_Mutation p.R1458Q 0.33 benign(0.001) TCGA-D3-A8GL-06 6 7845530 7845530 C T BMP6 Silent p.I274I 0.33 TCGA-D3-A8GL-06 6 84310997 84310997 G T SNAP91 Silent p.L439L 0.93 TCGA-D3-A8GL-06 6 90428291 90428291 C T MDN1 Missense_Mutation p.R2126K 0.88 benign(0.105) TCGA-D3-A8GL-06 6 93967241 93967241 C T EPHA7 Missense_Mutation p.G704E 0.69 tolerated(0.06) probably_damaging(0.996) TCGA-D3-A8GL-06 6 99849143 99849143 G A PNISR Missense_Mutation p.P564L 0.85 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-D3-A8GL-06 7 100086281 100086281 G A NYAP1 Missense_Mutation p.G313R 0.42 tolerated(0.18) benign(0.087) TCGA-D3-A8GL-06 7 100204210 100204210 G A PCOLCE Silent p.K299K 0.26 TCGA-D3-A8GL-06 7 100675792 100675792 G A MUC17 Silent p.V365V 0.47 TCGA-D3-A8GL-06 7 101256753 101256753 C T MYL10 3'UTR 0.48 TCGA-D3-A8GL-06 7 101916743 101916743 C T CUX1 Silent p.S452S 0.52 TCGA-D3-A8GL-06 7 1024801 1024801 G A CYP2W1 Splice_Site p.X163_splice 0.67 TCGA-D3-A8GL-06 7 102523827 102523827 C T FBXL13 Missense_Mutation p.G438E 0.48 tolerated(0.39) benign(0.015) TCGA-D3-A8GL-06 7 103030897 103030897 G A SLC26A5 Silent p.F430F 0.42 TCGA-D3-A8GL-06 7 111540469 111540469 G A DOCK4 Missense_Mutation p.R481W 0.44 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 7 112424400 112424400 C A TMEM168 Nonsense_Mutation p.E161* 0.38 TCGA-D3-A8GL-06 7 113518205 113518205 C T PPP1R3A Missense_Mutation p.G981E 0.39 tolerated(0.84) benign(0.012) TCGA-D3-A8GL-06 7 113518644 113518644 C T PPP1R3A Missense_Mutation p.E835K 0.44 tolerated(0.4) benign(0.016) TCGA-D3-A8GL-06 7 113518875 113518875 C T PPP1R3A Missense_Mutation p.E758K 0.52 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 113519690 113519690 C T PPP1R3A Missense_Mutation p.R486Q 0.38 deleterious(0.01) benign(0.325) TCGA-D3-A8GL-06 7 116339364 116339364 G A MET Missense_Mutation p.E76K 0.46 tolerated(0.84) benign(0.001) TCGA-D3-A8GL-06 7 117864840 117864840 C T ANKRD7 5'UTR 0.34 TCGA-D3-A8GL-06 7 120906319 120906319 G A CPED1 Missense_Mutation p.M783I 0.43 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GL-06 7 121651921 121651921 A T PTPRZ1 Missense_Mutation p.T941S 0.47 tolerated_low_confidence(0.14) benign(0.009) TCGA-D3-A8GL-06 7 121651922 121651922 C T PTPRZ1 Missense_Mutation p.T941I 0.48 deleterious_low_confidence(0.01) benign(0.358) TCGA-D3-A8GL-06 7 121653888 121653888 C T PTPRZ1 Silent p.S1596S 0.48 TCGA-D3-A8GL-06 7 122839911 122839911 G A SLC13A1 Silent p.L30L 0.42 TCGA-D3-A8GL-06 7 122839947 122839947 G A SLC13A1 Silent p.F18F 0.43 TCGA-D3-A8GL-06 7 123256477 123256477 G A ASB15 Missense_Mutation p.E74K 0.54 tolerated(0.38) benign(0.011) TCGA-D3-A8GL-06 7 123594066 123594066 G A SPAM1 Missense_Mutation p.E148K 0.51 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GL-06 7 126079092 126079092 C T GRM8 3'UTR 0.58 TCGA-D3-A8GL-06 7 126079151 126079151 C T GRM8 3'UTR 0.47 TCGA-D3-A8GL-06 7 126544086 126544086 G A GRM8 Nonsense_Mutation p.Q320* 0.35 TCGA-D3-A8GL-06 7 127253504 127253504 C T PAX4 Silent p.R207R 0.30 TCGA-D3-A8GL-06 7 127714603 127714603 G T SND1 Missense_Mutation p.W610L 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-D3-A8GL-06 7 127714604 127714604 G A SND1 Nonsense_Mutation p.W610* 0.50 TCGA-D3-A8GL-06 7 128478756 128478756 G A FLNC Missense_Mutation p.R437H 0.40 deleterious(0.02) probably_damaging(0.973) TCGA-D3-A8GL-06 7 128486138 128486138 C T FLNC Silent p.P1295P 0.42 TCGA-D3-A8GL-06 7 131913144 131913144 G A PLXNA4 Silent p.V563V 0.38 TCGA-D3-A8GL-06 7 134132084 134132084 G A AKR1B1 Missense_Mutation p.S264F 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 7 134133183 134133183 G A AKR1B1 Silent p.I205I 0.45 TCGA-D3-A8GL-06 7 135330250 135330250 C T NUP205 Silent p.R1906R 0.32 TCGA-D3-A8GL-06 7 135636343 135636343 C T MTPN Silent p.R36R 0.38 TCGA-D3-A8GL-06 7 137263058 137263058 C T DGKI Silent p.E552E 0.43 TCGA-D3-A8GL-06 7 137330239 137330239 C T DGKI Silent p.G261G 0.50 TCGA-D3-A8GL-06 7 141418917 141418917 G A WEE2 Missense_Mutation p.E211K 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 141427218 141427218 G A WEE2 Missense_Mutation p.E503K 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 141536104 141536104 C T PRSS37 3'UTR 0.31 TCGA-D3-A8GL-06 7 141536945 141536945 C T PRSS37 Silent p.V178V 0.23 TCGA-D3-A8GL-06 7 141730466 141730466 C T MGAM Missense_Mutation p.S460F 0.31 tolerated(0.06) benign(0.009) TCGA-D3-A8GL-06 7 142001180 142001180 G A TRBV2 Missense_Mutation p.G58E 0.57 TCGA-D3-A8GL-06 7 142028353 142028353 C T TRBV6-1 Silent p.F29F 0.40 TCGA-D3-A8GL-06 7 142099672 142099672 G A TRBV7-8 Missense_Mutation p.P44S 0.39 deleterious(0.02) probably_damaging(0.949) TCGA-D3-A8GL-06 7 142111427 142111427 C T TRBV5-7 Silent p.G103G 0.40 TCGA-D3-A8GL-06 7 142149145 142149145 G A TRBV5-5 Silent p.C42C 0.36 TCGA-D3-A8GL-06 7 142168581 142168581 G A TRBV5-4 Missense_Mutation p.H48Y 0.47 deleterious(0.01) possibly_damaging(0.618) TCGA-D3-A8GL-06 7 142206692 142206692 G A TRBV10-2 Nonsense_Mutation p.R55* 0.35 TCGA-D3-A8GL-06 7 142231824 142231824 G A TRBV10-1 Silent p.I31I 0.42 TCGA-D3-A8GL-06 7 142326749 142326749 C T TRBV19 Intron 0.43 TCGA-D3-A8GL-06 7 142622683 142622683 G A TRPV5 Missense_Mutation p.R355C 0.40 tolerated(0.14) benign(0.033) TCGA-D3-A8GL-06 7 142636757 142636757 C T C7orf34 Silent p.F38F 0.34 TCGA-D3-A8GL-06 7 142723385 142723385 G A OR9A2 Missense_Mutation p.P279S 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 7 142962289 142962289 C T GSTK1 Missense_Mutation p.S163F 0.64 tolerated_low_confidence(0.05) benign(0.102) TCGA-D3-A8GL-06 7 143048978 143048978 G A CLCN1 Missense_Mutation p.E963K 0.48 tolerated_low_confidence(0.14) benign(0.146) TCGA-D3-A8GL-06 7 143054419 143054419 C T FAM131B Silent p.L188L 0.37 TCGA-D3-A8GL-06 7 143510109 143510109 G A RP11-61L23.2 RNA 0.34 TCGA-D3-A8GL-06 7 143657777 143657777 C T OR2F1 Silent p.F238F 0.40 TCGA-D3-A8GL-06 7 143771348 143771348 C T OR2A25 Silent p.L12L 0.45 TCGA-D3-A8GL-06 7 143827063 143827063 C T OR2A14 Silent p.P286P 0.37 TCGA-D3-A8GL-06 7 144068283 144068283 C A ARHGEF5 Silent p.A1187A 0.19 TCGA-D3-A8GL-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.44 deleterious(0) possibly_damaging(0.466) TCGA-D3-A8GL-06 7 14775787 14775787 C T DGKB Missense_Mutation p.M67I 0.39 tolerated(0.07) benign(0.196) TCGA-D3-A8GL-06 7 148767915 148767915 G A ZNF786 Missense_Mutation p.S650F 0.48 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 149494392 149494392 C A SSPO RNA 0.51 TCGA-D3-A8GL-06 7 149494393 149494393 C T SSPO RNA 0.51 TCGA-D3-A8GL-06 7 149519025 149519025 A G SSPO RNA 0.70 TCGA-D3-A8GL-06 7 150217229 150217229 G A GIMAP7 Missense_Mutation p.G56E 0.41 tolerated(0.12) possibly_damaging(0.651) TCGA-D3-A8GL-06 7 150217697 150217697 G A GIMAP7 Missense_Mutation p.R212K 0.24 tolerated(1) benign(0.023) TCGA-D3-A8GL-06 7 150417411 150417411 C T GIMAP1 Missense_Mutation p.L107F 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.45 tolerated(1) benign(0.001) TCGA-D3-A8GL-06 7 150554705 150554705 C T AOC1 Missense_Mutation p.H383Y 0.54 tolerated(0.71) benign(0.038) TCGA-D3-A8GL-06 7 150764040 150764065 CACCTCGGGCCCGACCCCGGGCCCCC - SLC4A2 Frame_Shift_Del p.P310Qfs*4 0.45 TCGA-D3-A8GL-06 7 150878077 150878077 C T ASB10 Silent p.R351R 0.35 TCGA-D3-A8GL-06 7 151970927 151970927 C T KMT2C Missense_Mutation p.G292E 0.07 probably_damaging(0.998) TCGA-D3-A8GL-06 7 154143308 154143308 G A DPP6 Missense_Mutation p.G85R 0.43 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 7 154876140 154876140 G A HTR5A Silent p.T339T 0.49 TCGA-D3-A8GL-06 7 156743196 156743196 C T NOM1 Silent p.S255S 0.42 TCGA-D3-A8GL-06 7 17378907 17378907 C T AHR Silent p.F486F 0.40 TCGA-D3-A8GL-06 7 17836521 17836521 G A SNX13 Missense_Mutation p.P852L 0.42 tolerated(0.09) benign(0.029) TCGA-D3-A8GL-06 7 18993813 18993813 G A HDAC9 Missense_Mutation p.M994I 0.50 tolerated(0.21) benign(0.004) TCGA-D3-A8GL-06 7 19015451 19015451 G A HDAC9 Silent p.R1015R 0.42 TCGA-D3-A8GL-06 7 20766738 20766738 G A ABCB5 Missense_Mutation p.E901K 0.45 tolerated(0.47) benign(0.041) TCGA-D3-A8GL-06 7 20778700 20778700 C T ABCB5 Silent p.L988L 0.33 TCGA-D3-A8GL-06 7 20782527 20782527 C T ABCB5 Nonsense_Mutation p.R1018* 0.35 TCGA-D3-A8GL-06 7 21641075 21641075 G A DNAH11 Missense_Mutation p.E1163K 0.40 benign(0.011) TCGA-D3-A8GL-06 7 21641076 21641076 A T DNAH11 Missense_Mutation p.E1163V 0.40 possibly_damaging(0.625) TCGA-D3-A8GL-06 7 21882190 21882190 G A DNAH11 Missense_Mutation p.E3581K 0.53 benign(0.118) TCGA-D3-A8GL-06 7 22206758 22206758 G A RAPGEF5 Silent p.L252L 0.50 TCGA-D3-A8GL-06 7 22896303 22896303 C T SNORD93 RNA 0.45 TCGA-D3-A8GL-06 7 23729015 23729015 C T FAM221A Missense_Mutation p.R123C 0.40 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GL-06 7 23776552 23776552 T A STK31 Nonsense_Mutation p.L291* 0.41 TCGA-D3-A8GL-06 7 23826208 23826208 G A STK31 Missense_Mutation p.G786R 0.41 deleterious(0) benign(0.017) TCGA-D3-A8GL-06 7 24720084 24720084 T C MPP6 Missense_Mutation p.L464S 0.54 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GL-06 7 24881958 24881958 G A OSBPL3 Silent p.S447S 0.41 TCGA-D3-A8GL-06 7 26237261 26237261 C A HNRNPA2B1 Missense_Mutation p.G45V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GL-06 7 30694660 30694660 C T CRHR2 Missense_Mutation p.G391R 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GL-06 7 30921827 30921827 C T FAM188B Missense_Mutation p.P668L 0.42 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 7 34979862 34979862 A G DPY19L1 Silent p.G516G 0.42 TCGA-D3-A8GL-06 7 37264516 37264516 G A ELMO1 Silent p.I223I 0.47 TCGA-D3-A8GL-06 7 41729613 41729613 G A INHBA Missense_Mutation p.R306C 0.49 deleterious(0) probably_damaging(0.932) TCGA-D3-A8GL-06 7 44112796 44112796 G A POLM 3'UTR 0.50 TCGA-D3-A8GL-06 7 44556343 44556343 C T NPC1L1 Missense_Mutation p.G1187S 0.27 tolerated(0.14) benign(0.192) TCGA-D3-A8GL-06 7 44575993 44575993 C T NPC1L1 Missense_Mutation p.M572I 0.51 tolerated(0.98) benign(0.001) TCGA-D3-A8GL-06 7 45662342 45662342 G A ADCY1 Silent p.T340T 0.52 TCGA-D3-A8GL-06 7 48450201 48450201 T G ABCA13 Missense_Mutation p.L4052R 0.50 probably_damaging(1) TCGA-D3-A8GL-06 7 5327587 5327587 C T SLC29A4 Missense_Mutation p.A47V 0.43 tolerated(0.13) benign(0.003) TCGA-D3-A8GL-06 7 5327588 5327588 C T SLC29A4 Silent p.A47A 0.43 TCGA-D3-A8GL-06 7 54612452 54612452 G A VSTM2A Missense_Mutation p.D73N 0.58 tolerated(0.23) benign(0.049) TCGA-D3-A8GL-06 7 55240775 55240775 C T EGFR Silent p.I673I 0.40 TCGA-D3-A8GL-06 7 57188623 57188623 C T ZNF479 Missense_Mutation p.G167S 0.50 tolerated(0.32) benign(0.142) TCGA-D3-A8GL-06 7 66458310 66458310 T A SBDS Missense_Mutation p.K118I 0.45 deleterious(0.01) benign(0.14) TCGA-D3-A8GL-06 7 70242093 70242093 C T AUTS2 Missense_Mutation p.P646L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 70853302 70853302 C T WBSCR17 Silent p.I168I 0.47 TCGA-D3-A8GL-06 7 71177240 71177240 G A WBSCR17 3'UTR 0.56 TCGA-D3-A8GL-06 7 72420755 72420755 C T POM121 3'UTR 0.43 TCGA-D3-A8GL-06 7 72436558 72436558 G C TRIM74 Missense_Mutation p.S44C 0.39 deleterious(0.03) benign(0.078) TCGA-D3-A8GL-06 7 73245564 73245564 C T CLDN4 Silent p.I11I 0.49 TCGA-D3-A8GL-06 7 75044972 75044972 C T POM121C 3'Flank 0.53 TCGA-D3-A8GL-06 7 75625778 75625778 G A STYXL1 3'UTR 0.38 TCGA-D3-A8GL-06 7 75625779 75625779 G A STYXL1 3'UTR 0.37 TCGA-D3-A8GL-06 7 76631482 76631482 C T UPK3B Intron 0.24 TCGA-D3-A8GL-06 7 76916777 76916777 G A CCDC146 Silent p.K766K 0.42 TCGA-D3-A8GL-06 7 769389 769389 G A HEATR2 Missense_Mutation p.E229K 0.45 tolerated(0.07) benign(0.061) TCGA-D3-A8GL-06 7 81392164 81392164 G T HGF Missense_Mutation p.T38K 0.44 tolerated(0.14) benign(0.205) TCGA-D3-A8GL-06 7 81392165 81392165 T A HGF Missense_Mutation p.T38S 0.44 tolerated(0.64) benign(0.067) TCGA-D3-A8GL-06 7 81599997 81599997 G A CACNA2D1 Missense_Mutation p.P733L 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 7 82538248 82538248 C T PCLO Missense_Mutation p.R4461Q 0.43 unknown(0) TCGA-D3-A8GL-06 7 82586116 82586116 C T PCLO Missense_Mutation p.E1385K 0.38 unknown(0) TCGA-D3-A8GL-06 7 82764587 82764587 A T PCLO Missense_Mutation p.V760E 0.47 unknown(0) TCGA-D3-A8GL-06 7 84727254 84727254 G A SEMA3D Missense_Mutation p.P60L 0.43 tolerated(0.5) benign(0.039) TCGA-D3-A8GL-06 7 86568177 86568177 G A KIAA1324L Missense_Mutation p.S316F 0.50 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GL-06 7 87092091 87092091 C T ABCB4 Missense_Mutation p.G90E 0.42 tolerated(0.63) benign(0.003) TCGA-D3-A8GL-06 7 87170679 87170679 G A ABCB1 Silent p.F771F 0.51 TCGA-D3-A8GL-06 7 87911921 87911921 C T STEAP4 Intron 0.50 TCGA-D3-A8GL-06 7 92143220 92143220 G A PEX1 Missense_Mutation p.P434L 0.43 deleterious(0) benign(0.185) TCGA-D3-A8GL-06 7 92761163 92761163 C T SAMD9L Silent p.K1374K 0.45 TCGA-D3-A8GL-06 7 92761382 92761382 C T SAMD9L Silent p.R1301R 0.41 TCGA-D3-A8GL-06 7 94053649 94053649 G A COL1A2 Missense_Mutation p.G856E 0.41 unknown(0) TCGA-D3-A8GL-06 7 94057119 94057119 C T COL1A2 Missense_Mutation p.L1150F 0.53 unknown(0) TCGA-D3-A8GL-06 7 95709681 95709681 A G DYNC1I1 Missense_Mutation p.T570A 0.39 tolerated(0.15) benign(0.014) TCGA-D3-A8GL-06 7 98453679 98453679 G A TMEM130 Nonsense_Mutation p.Q227* 0.74 TCGA-D3-A8GL-06 7 98579466 98579466 C T TRRAP Silent p.P2896P 0.67 TCGA-D3-A8GL-06 7 98643392 98643392 C T SMURF1 Silent p.P421P 0.55 TCGA-D3-A8GL-06 7 99305495 99305495 C T CYP3A7 Missense_Mutation p.M452I 0.43 tolerated(0.26) benign(0.115) TCGA-D3-A8GL-06 7 99313486 99313486 A T CYP3A7 Missense_Mutation p.F189I 0.43 deleterious(0) possibly_damaging(0.797) TCGA-D3-A8GL-06 8 101196199 101196199 G A SPAG1 Silent p.K168K 0.39 TCGA-D3-A8GL-06 8 105509412 105509412 G A LRP12 Silent p.F456F 0.44 TCGA-D3-A8GL-06 8 108334310 108334310 C T ANGPT1 Missense_Mutation p.E208K 0.30 deleterious(0.02) possibly_damaging(0.638) TCGA-D3-A8GL-06 8 110519977 110519977 G A PKHD1L1 Missense_Mutation p.G3694R 0.38 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 8 110534478 110534478 G A PKHD1L1 Missense_Mutation p.G4032E 0.35 deleterious(0.01) benign(0.368) TCGA-D3-A8GL-06 8 110984663 110984663 C T KCNV1 Missense_Mutation p.R272K 0.39 tolerated(1) possibly_damaging(0.848) TCGA-D3-A8GL-06 8 113564911 113564911 T C CSMD3 Missense_Mutation p.R1425G 0.49 deleterious(0.03) probably_damaging(0.951) TCGA-D3-A8GL-06 8 113702202 113702202 C T CSMD3 Missense_Mutation p.D684N 0.41 deleterious(0.02) probably_damaging(0.969) TCGA-D3-A8GL-06 8 113988323 113988323 C T CSMD3 Missense_Mutation p.R362K 0.36 tolerated(0.74) benign(0) TCGA-D3-A8GL-06 8 114111130 114111130 G A CSMD3 Missense_Mutation p.P258S 0.49 deleterious(0) benign(0.113) TCGA-D3-A8GL-06 8 114186110 114186110 G A CSMD3 Missense_Mutation p.P184S 0.45 deleterious(0.02) benign(0.266) TCGA-D3-A8GL-06 8 118183392 118183392 G A SLC30A8 Missense_Mutation p.A317T 0.42 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A8GL-06 8 119452164 119452164 A T SAMD12 Missense_Mutation p.W77R 0.43 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GL-06 8 119592994 119592994 C T SAMD12 Missense_Mutation p.G51E 0.38 tolerated(0.4) benign(0.019) TCGA-D3-A8GL-06 8 11994995 11994995 C T USP17L2 Silent p.V425V 0.17 TCGA-D3-A8GL-06 8 124361574 124361574 C T ATAD2 Missense_Mutation p.R586K 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 8 124989749 124989749 G A FER1L6 Silent p.V321V 0.51 TCGA-D3-A8GL-06 8 125025730 125025730 G A FER1L6 Silent p.E627E 0.49 TCGA-D3-A8GL-06 8 125110074 125110074 G A FER1L6 Silent p.E1611E 0.33 TCGA-D3-A8GL-06 8 126071773 126071773 G A KIAA0196 Silent p.F511F 0.34 TCGA-D3-A8GL-06 8 131193075 131193075 G A ASAP1 Silent p.I194I 0.46 TCGA-D3-A8GL-06 8 131797686 131797686 C T ADCY8 Silent p.K1032K 0.38 TCGA-D3-A8GL-06 8 133152366 133152366 C T KCNQ3 Missense_Mutation p.E509K 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 8 133673818 133673818 G A LRRC6 Silent p.S22S 0.53 TCGA-D3-A8GL-06 8 133673867 133673867 T C LRRC6 Missense_Mutation p.E6G 0.32 deleterious(0) possibly_damaging(0.646) TCGA-D3-A8GL-06 8 133906156 133906156 C T TG Missense_Mutation p.R995C 0.52 deleterious(0) possibly_damaging(0.847) TCGA-D3-A8GL-06 8 134146955 134146955 G A TG Missense_Mutation p.E2742K 0.44 deleterious(0.05) benign(0.01) TCGA-D3-A8GL-06 8 139890432 139890432 G T COL22A1 Missense_Mutation p.D73E 0.30 unknown(0) TCGA-D3-A8GL-06 8 141460945 141460945 G A TRAPPC9 Silent p.P274P 0.39 TCGA-D3-A8GL-06 8 142487526 142487526 G A MROH5 3'UTR 0.48 TCGA-D3-A8GL-06 8 143563009 143563009 C A BAI1 Silent p.V689V 0.70 TCGA-D3-A8GL-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.37 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GL-06 8 144459572 144459572 A T RHPN1 Missense_Mutation p.I110F 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 8 144672217 144672217 G A EEF1D Missense_Mutation p.T12I 0.53 deleterious(0.01) possibly_damaging(0.646) TCGA-D3-A8GL-06 8 144940701 144940701 C T EPPK1 Missense_Mutation p.E2241K 0.27 possibly_damaging(0.492) TCGA-D3-A8GL-06 8 145113523 145113523 G A OPLAH Missense_Mutation p.S220L 0.38 deleterious(0.01) possibly_damaging(0.791) TCGA-D3-A8GL-06 8 15519668 15519668 C T TUSC3 Missense_Mutation p.R191W 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 8 16007793 16007793 C T MSR1 Missense_Mutation p.G309E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 8 16007794 16007794 C T MSR1 Missense_Mutation p.G309R 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 8 16026284 16026284 C T MSR1 Missense_Mutation p.E105K 0.56 tolerated(0.28) benign(0.005) TCGA-D3-A8GL-06 8 17159707 17159707 C T MTMR7 Missense_Mutation p.E526K 0.46 tolerated(0.08) probably_damaging(0.98) TCGA-D3-A8GL-06 8 17872215 17872215 C T PCM1 Missense_Mutation p.P1903S 0.52 tolerated_low_confidence(0.49) benign(0.047) TCGA-D3-A8GL-06 8 195158 195158 C T ZNF596 Missense_Mutation p.S104F 0.47 tolerated(0.11) benign(0.231) TCGA-D3-A8GL-06 8 21997708 21997708 G A REEP4 Silent p.I53I 0.51 TCGA-D3-A8GL-06 8 22161681 22161681 G A PIWIL2 Silent p.T443T 0.47 TCGA-D3-A8GL-06 8 22442624 22442624 C T PDLIM2 Missense_Mutation p.S387L 0.53 tolerated(0.05) possibly_damaging(0.745) TCGA-D3-A8GL-06 8 22888287 22888287 T G TNFRSF10B Missense_Mutation p.T117P 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GL-06 8 24324338 24324338 G T ADAM7 Missense_Mutation p.R139I 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 8 24775511 24775511 G A NEFM Missense_Mutation p.E715K 0.37 tolerated(0.69) benign(0.13) TCGA-D3-A8GL-06 8 25718726 25718726 C T EBF2 Missense_Mutation p.R394Q 0.44 deleterious(0.01) possibly_damaging(0.76) TCGA-D3-A8GL-06 8 27779744 27779744 G A SCARA5 Missense_Mutation p.S87F 0.30 deleterious(0) possibly_damaging(0.815) TCGA-D3-A8GL-06 8 2808739 2808739 C T CSMD1 Silent p.G3366G 0.43 TCGA-D3-A8GL-06 8 28196754 28196754 G A PNOC Silent p.Q108Q 0.29 TCGA-D3-A8GL-06 8 28206258 28206258 G A ZNF395 Missense_Mutation p.A507V 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 8 29024937 29024937 G A KIF13B Missense_Mutation p.L371F 0.46 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 8 30699682 30699682 A T TEX15 Missense_Mutation p.N2284K 0.45 tolerated(0.48) benign(0.121) TCGA-D3-A8GL-06 8 3200865 3200865 G A CSMD1 Silent p.F1194F 0.52 TCGA-D3-A8GL-06 8 35616837 35616837 G - UNC5D Splice_Site p.X722_splice 0.30 TCGA-D3-A8GL-06 8 35616925 35616925 C T UNC5D Nonsense_Mutation p.Q751* 0.40 TCGA-D3-A8GL-06 8 35624569 35624569 G A UNC5D Silent p.Q821Q 0.38 TCGA-D3-A8GL-06 8 35648174 35648174 G A UNC5D 3'Flank 0.38 TCGA-D3-A8GL-06 8 37720449 37720449 G A RAB11FIP1 Silent p.I1272I 0.42 TCGA-D3-A8GL-06 8 38693689 38693689 G T TACC1 Nonsense_Mutation p.E575* 0.29 TCGA-D3-A8GL-06 8 38705549 38705549 C A TACC1 3'UTR 0.39 TCGA-D3-A8GL-06 8 38832595 38832595 C T HTRA4 Missense_Mutation p.A171V 0.42 deleterious(0.01) benign(0.031) TCGA-D3-A8GL-06 8 39091502 39091502 C T ADAM32 Silent p.F573F 0.78 TCGA-D3-A8GL-06 8 39468237 39468237 C T ADAM18 Intron 0.52 TCGA-D3-A8GL-06 8 39537570 39537570 G A ADAM18 Missense_Mutation p.G549E 0.49 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 8 39550149 39550149 C T ADAM18 Missense_Mutation p.H618Y 0.46 tolerated(0.36) benign(0.242) TCGA-D3-A8GL-06 8 48648065 48648065 G A SPIDR 3'UTR 0.55 TCGA-D3-A8GL-06 8 52366226 52366226 C T PXDNL Missense_Mutation p.G368R 0.54 tolerated(0.57) benign(0.029) TCGA-D3-A8GL-06 8 53025660 53025660 A T ST18 3'UTR 0.59 TCGA-D3-A8GL-06 8 53025661 53025661 C T ST18 3'UTR 0.59 TCGA-D3-A8GL-06 8 54142271 54142271 G A OPRK1 Silent p.I243I 0.47 TCGA-D3-A8GL-06 8 55534822 55534822 G A RP1 Missense_Mutation p.G254E 0.33 deleterious(0.05) benign(0.133) TCGA-D3-A8GL-06 8 55538698 55538698 G A RP1 Silent p.T752T 0.48 TCGA-D3-A8GL-06 8 57026073 57026073 G A MOS Missense_Mutation p.H157Y 0.34 tolerated(1) benign(0.004) TCGA-D3-A8GL-06 8 57219300 57219300 C T SDR16C5 Silent p.G215G 0.49 TCGA-D3-A8GL-06 8 6873426 6873426 G A DEFA3 3'UTR 0.47 TCGA-D3-A8GL-06 8 68934283 68934283 C T PREX2 Missense_Mutation p.R117C 0.45 tolerated(0.2) benign(0.002) TCGA-D3-A8GL-06 8 68995569 68995569 C T PREX2 Missense_Mutation p.S658L 0.52 deleterious(0.03) benign(0.001) TCGA-D3-A8GL-06 8 74894754 74894754 C T TMEM70 3'UTR 1.00 TCGA-D3-A8GL-06 8 75227587 75227587 G A JPH1 Silent p.S216S 0.34 TCGA-D3-A8GL-06 8 77616591 77616591 C A ZFHX4 Missense_Mutation p.P90T 0.51 possibly_damaging(0.803) TCGA-D3-A8GL-06 8 77616926 77616926 C T ZFHX4 Silent p.L201L 0.48 TCGA-D3-A8GL-06 8 77767040 77767040 C T ZFHX4 Missense_Mutation p.S2628F 0.50 probably_damaging(0.934) TCGA-D3-A8GL-06 8 86242021 86242021 G A CA1 Missense_Mutation p.S189F 0.50 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GL-06 8 86245832 86245832 C T CA1 Nonsense_Mutation p.W124* 0.45 TCGA-D3-A8GL-06 8 86250626 86250626 G A CA1 Silent p.S30S 0.38 TCGA-D3-A8GL-06 8 87591002 87591002 G A CNGB3 Missense_Mutation p.P673L 0.43 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 8 88249298 88249298 C T CNBD1 Silent p.N243N 0.41 TCGA-D3-A8GL-06 8 99719457 99719457 C T STK3 Missense_Mutation p.R173K 0.48 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GL-06 9 102713357 102713357 A G STX17 Missense_Mutation p.I69V 0.81 tolerated(0.54) benign(0.013) TCGA-D3-A8GL-06 9 104032204 104032204 G A LPPR1 Missense_Mutation p.E36K 0.98 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GL-06 9 106889040 106889040 T A SMC2 Missense_Mutation p.M857K 0.80 deleterious(0.02) benign(0.148) TCGA-D3-A8GL-06 9 107380039 107380039 C T OR13C9 Nonsense_Mutation p.W149* 0.93 TCGA-D3-A8GL-06 9 113252033 113252033 G A SVEP1 Silent p.F609F 0.73 TCGA-D3-A8GL-06 9 118152 118152 G A FOXD4 5'UTR 0.67 TCGA-D3-A8GL-06 9 119187850 119187850 G A ASTN2 3'UTR 0.67 TCGA-D3-A8GL-06 9 120475867 120475867 C T TLR4 Silent p.F487F 0.95 TCGA-D3-A8GL-06 9 124544639 124544639 C T DAB2IP Silent p.A1116A 0.81 TCGA-D3-A8GL-06 9 124910417 124910417 G A NDUFA8 Missense_Mutation p.R119W 0.05 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GL-06 9 125140293 125140293 C T PTGS1 Silent p.I70I 0.81 TCGA-D3-A8GL-06 9 125148909 125148909 C T AL162424.1 Missense_Mutation p.G7E 0.92 probably_damaging(0.97) TCGA-D3-A8GL-06 9 125154831 125154831 G A PTGS1 3'UTR 0.93 TCGA-D3-A8GL-06 9 125282105 125282105 C T OR1J4 Missense_Mutation p.P229L 0.84 deleterious_low_confidence(0.01) benign(0.35) TCGA-D3-A8GL-06 9 125288801 125288801 G A OR1N1 Silent p.L258L 0.82 TCGA-D3-A8GL-06 9 125377100 125377100 C T OR1Q1 Silent p.F28F 0.86 TCGA-D3-A8GL-06 9 128322036 128322036 C T MAPKAP1 Missense_Mutation p.D242N 0.87 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GL-06 9 130479655 130479655 G A TTC16 Silent p.E78E 0.92 TCGA-D3-A8GL-06 9 130914300 130914300 C T LCN2 Silent p.L157L 0.76 TCGA-D3-A8GL-06 9 134351338 134351338 C T PRRC2B Silent p.S1274S 0.95 TCGA-D3-A8GL-06 9 134351339 134351339 C T PRRC2B Missense_Mutation p.R1275C 0.95 tolerated(0.06) possibly_damaging(0.762) TCGA-D3-A8GL-06 9 137702147 137702147 G A COL5A1 Missense_Mutation p.G1174E 0.96 unknown(0) TCGA-D3-A8GL-06 9 138656880 138656880 G A KCNT1 Missense_Mutation p.E347K 0.88 deleterious(0) probably_damaging(0.93) TCGA-D3-A8GL-06 9 139738869 139738869 G A C9orf172 Translation_Start_Site p.M1? 0.75 deleterious(0) benign(0.043) TCGA-D3-A8GL-06 9 140772649 140772649 G A CACNA1B Silent p.A88A 0.19 TCGA-D3-A8GL-06 9 140972591 140972591 G A CACNA1B Missense_Mutation p.E1659K 0.87 deleterious(0) possibly_damaging(0.766) TCGA-D3-A8GL-06 9 140990989 140990989 G A CACNA1B Silent p.R1716R 0.88 TCGA-D3-A8GL-06 9 21141057 21141057 G A IFNW1 Silent p.I171I 0.80 TCGA-D3-A8GL-06 9 21206345 21206345 C T IFNA10 3'UTR 0.88 TCGA-D3-A8GL-06 9 23762094 23762094 G A ELAVL2 Missense_Mutation p.P47S 0.90 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GL-06 9 33255095 33255095 G A BAG1 3'UTR 0.87 TCGA-D3-A8GL-06 9 33294811 33294811 C T NFX1 Missense_Mutation p.S140L 0.92 tolerated(0.29) benign(0.002) TCGA-D3-A8GL-06 9 35870132 35870132 C T OR13J1 Silent p.R89R 0.82 TCGA-D3-A8GL-06 9 6328435 6328435 C T TPD52L3 5'UTR 0.90 TCGA-D3-A8GL-06 9 6328772 6328772 A G TPD52L3 Silent p.E59E 0.88 TCGA-D3-A8GL-06 9 70177762 70177762 G A FOXD4L5 Silent p.I74I 0.49 TCGA-D3-A8GL-06 9 77277391 77277391 C T RORB Missense_Mutation p.S254F 0.86 deleterious(0) possibly_damaging(0.717) TCGA-D3-A8GL-06 9 78973501 78973501 C T PCSK5 Missense_Mutation p.S1749F 0.88 tolerated(0.05) benign(0.01) TCGA-D3-A8GL-06 9 79320073 79320073 G A PRUNE2 Silent p.L2373L 0.86 TCGA-D3-A8GL-06 9 79908410 79908410 C T VPS13A Silent p.L1165L 0.90 TCGA-D3-A8GL-06 9 8338945 8338945 C T PTPRD Missense_Mutation p.E1786K 0.86 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GL-06 9 84532699 84532699 C T SPATA31D5P RNA 0.89 TCGA-D3-A8GL-06 9 8504345 8504345 A G PTPRD Silent p.L580L 0.84 TCGA-D3-A8GL-06 9 8521536 8521536 G A PTPRD Silent p.V234V 0.92 TCGA-D3-A8GL-06 9 8528672 8528672 C T PTPRD Missense_Mutation p.D154N 0.91 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GL-06 9 85925445 85925445 C T FRMD3 Silent p.L264L 0.84 TCGA-D3-A8GL-06 9 90500509 90500509 C T SPATA31E1 Silent p.I369I 0.89 TCGA-D3-A8GL-06 9 90503118 90503118 T A SPATA31E1 Missense_Mutation p.I1239K 1.00 deleterious(0.02) benign(0.242) TCGA-D3-A8GL-06 9 90503755 90503755 C T SPATA31E1 3'UTR 0.75 TCGA-D3-A8GL-06 9 91616458 91616458 G A S1PR3 Missense_Mutation p.E115K 0.81 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 9 91661773 91661773 G A SHC3 Missense_Mutation p.P367S 0.82 tolerated(0.24) benign(0.001) TCGA-D3-A8GL-06 9 94499787 94499787 C T ROR2 Missense_Mutation p.E170K 1.00 tolerated(0.13) benign(0.009) TCGA-D3-A8GL-06 9 99699570 99699570 G A NUTM2G Missense_Mutation p.G403R 0.68 deleterious(0.02) benign(0.027) TCGA-D3-A8GL-06 X 101095819 101095819 G A NXF5 Missense_Mutation p.L177F 0.95 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GL-06 X 101576737 101576737 C T NXF2 Silent p.L411L 0.39 TCGA-D3-A8GL-06 X 10442785 10442785 G A MID1 Missense_Mutation p.S340F 1.00 tolerated(0.07) benign(0.062) TCGA-D3-A8GL-06 X 106456124 106456124 G A PIH1D3 Missense_Mutation p.D7N 0.92 deleterious_low_confidence(0.01) benign(0.187) TCGA-D3-A8GL-06 X 109695972 109695972 A G RGAG1 Silent p.L709L 0.97 TCGA-D3-A8GL-06 X 111095589 111095589 C T TRPC5 Missense_Mutation p.M438I 0.83 tolerated(0.59) probably_damaging(0.93) TCGA-D3-A8GL-06 X 115582647 115582647 C T SLC6A14 Missense_Mutation p.S324L 0.89 deleterious(0) probably_damaging(1) TCGA-D3-A8GL-06 X 119005383 119005383 G A RNF113A Missense_Mutation p.P65L 0.92 deleterious(0.02) benign(0.23) TCGA-D3-A8GL-06 X 12632990 12632990 G A FRMPD4 Missense_Mutation p.D138N 0.94 tolerated(0.07) probably_damaging(0.977) TCGA-D3-A8GL-06 X 12736122 12736122 G A FRMPD4 Silent p.E1059E 0.94 TCGA-D3-A8GL-06 X 128710464 128710464 T C OCRL Silent p.L684L 0.93 TCGA-D3-A8GL-06 X 130219008 130219008 G A ARHGAP36 Missense_Mutation p.D309N 0.93 deleterious(0.04) possibly_damaging(0.843) TCGA-D3-A8GL-06 X 133927904 133927904 G A FAM122B Nonsense_Mutation p.Q40* 0.95 TCGA-D3-A8GL-06 X 135432569 135432569 C T GPR112 Missense_Mutation p.S2235L 0.91 deleterious(0.03) possibly_damaging(0.774) TCGA-D3-A8GL-06 X 135754244 135754244 G A ARHGEF6 Silent p.L690L 0.94 TCGA-D3-A8GL-06 X 137715118 137715118 C T FGF13 Missense_Mutation p.D221N 0.92 tolerated(0.05) benign(0.042) TCGA-D3-A8GL-06 X 138698581 138698581 C T MCF2 Missense_Mutation p.D411N 0.92 deleterious(0.01) benign(0.011) TCGA-D3-A8GL-06 X 139038368 139038368 G A CXorf66 Missense_Mutation p.S258F 0.96 deleterious(0) benign(0.138) TCGA-D3-A8GL-06 X 140985087 140985087 G A MAGEC3 Missense_Mutation p.D515N 0.97 deleterious(0) probably_damaging(0.932) TCGA-D3-A8GL-06 X 140985147 140985147 G A MAGEC3 Missense_Mutation p.G535R 0.96 deleterious(0.05) probably_damaging(0.972) TCGA-D3-A8GL-06 X 140994610 140994610 C T MAGEC1 Missense_Mutation p.P474S 0.91 tolerated_low_confidence(0.22) possibly_damaging(0.641) TCGA-D3-A8GL-06 X 142717125 142717125 G A SLITRK4 Silent p.F600F 0.93 TCGA-D3-A8GL-06 X 142967526 142967526 G A UBE2NL Silent p.S108S 0.94 TCGA-D3-A8GL-06 X 145078739 145078739 G A MIR892B RNA 0.95 TCGA-D3-A8GL-06 X 1471016 1471016 G A IL3RA Missense_Mutation p.E108K 0.31 tolerated(0.19) benign(0.107) TCGA-D3-A8GL-06 X 147985845 147985845 G A AFF2 Intron 0.92 TCGA-D3-A8GL-06 X 148044360 148044360 C T AFF2 Missense_Mutation p.P936S 0.88 tolerated(1) benign(0.002) TCGA-D3-A8GL-06 X 148690384 148690384 G T TMEM185A Missense_Mutation p.P118Q 0.92 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GL-06 X 150348345 150348345 G A GPR50 Missense_Mutation p.S97N 0.93 tolerated(0.09) benign(0.267) TCGA-D3-A8GL-06 X 151092332 151092332 C T MAGEA4 Missense_Mutation p.P66S 0.95 tolerated(0.42) probably_damaging(0.933) TCGA-D3-A8GL-06 X 151303119 151303119 G A MAGEA10 Missense_Mutation p.S325F 0.96 deleterious(0) possibly_damaging(0.573) TCGA-D3-A8GL-06 X 153696205 153696205 G A PLXNA3 Silent p.G1227G 0.91 TCGA-D3-A8GL-06 X 153908421 153908421 G A GAB3 Silent p.A545A 0.94 TCGA-D3-A8GL-06 X 153908422 153908422 G A GAB3 Missense_Mutation p.A545V 0.94 tolerated(0.08) benign(0.011) TCGA-D3-A8GL-06 X 18283883 18283883 G A SCML2 Missense_Mutation p.P257L 0.84 tolerated(0.12) benign(0.006) TCGA-D3-A8GL-06 X 23928450 23928450 G A CXorf58 Missense_Mutation p.G11S 0.91 tolerated_low_confidence(0.2) benign(0.018) TCGA-D3-A8GL-06 X 3030342 3030342 C T ARSF Silent p.L506L 0.93 TCGA-D3-A8GL-06 X 3240274 3240274 G A MXRA5 Missense_Mutation p.P1151L 0.91 deleterious(0) possibly_damaging(0.64) TCGA-D3-A8GL-06 X 47230114 47230114 C A ZNF157 Missense_Mutation p.P16Q 0.89 tolerated(0.05) probably_damaging(0.994) TCGA-D3-A8GL-06 X 55513653 55513653 G A USP51 Nonsense_Mutation p.Q574* 0.96 TCGA-D3-A8GL-06 X 595471 595471 C T SHOX Silent p.L132L 0.77 TCGA-D3-A8GL-06 X 65409641 65409641 C T HEPH Silent p.F362F 1.00 TCGA-D3-A8GL-06 X 66941714 66941714 C T AR Silent p.V786V 0.92 TCGA-D3-A8GL-06 X 66941715 66941715 C T AR Nonsense_Mutation p.R787* 0.92 TCGA-D3-A8GL-06 X 69825279 69825279 C T TEX11 Missense_Mutation p.G695E 0.95 deleterious(0.01) possibly_damaging(0.8) TCGA-D3-A8GL-06 X 69849464 69849464 T C TEX11 Silent p.L550L 0.90 TCGA-D3-A8GL-06 X 72433620 72433620 G A NAP1L2 Missense_Mutation p.P237S 0.91 tolerated(0.08) benign(0.077) TCGA-D3-A8GL-06 X 73045029 73045029 G A XIST RNA 1.00 TCGA-D3-A8GL-06 X 73062657 73062657 G A XIST RNA 1.00 TCGA-D3-A8GL-06 X 73063102 73063102 C T XIST RNA 0.94 TCGA-D3-A8GL-06 X 73066278 73066278 G A XIST RNA 0.91 TCGA-D3-A8GL-06 X 73067750 73067750 G A XIST RNA 0.86 TCGA-D3-A8GL-06 X 73963444 73963444 G A KIAA2022 Silent p.S316S 0.92 TCGA-D3-A8GL-06 X 75004386 75004386 C T MAGEE2 Silent p.R167R 1.00 TCGA-D3-A8GL-06 X 83320093 83320093 C T RPS6KA6 Missense_Mutation p.M666I 0.94 tolerated(0.13) benign(0.001) TCGA-D3-A8GL-06 X 83361387 83361387 C T RPS6KA6 Missense_Mutation p.E451K 0.89 tolerated(0.06) benign(0.394) TCGA-D3-A8GL-06 X 83411186 83411186 A C RPS6KA6 Missense_Mutation p.V52G 0.85 deleterious(0.04) benign(0.258) TCGA-D3-A8GL-06 X 85950140 85950140 C T DACH2 Missense_Mutation p.P297S 0.92 tolerated(0.99) benign(0.002) TCGA-D3-A8GL-06 X 86071057 86071057 G A DACH2 Missense_Mutation p.E569K 0.93 tolerated(0.12) benign(0.077) TCGA-D3-A8GL-06 X 86890719 86890719 G A KLHL4 Silent p.G623G 0.89 TCGA-D3-A8GL-06 X 91137946 91137946 T A PCDH11X Intron 0.80 TCGA-D3-A8GL-06 X 91642878 91642878 C T PCDH11X Missense_Mutation p.R1097C 0.76 deleterious(0) benign(0.017) TCGA-D3-A8GL-06 X 92964738 92964738 C T FAM133A Missense_Mutation p.S107F 0.92 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GL-06 Y 16941645 16941645 G A NLGN4Y Missense_Mutation p.A283T 0.94 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GL-06 Y 16941947 16941947 C T NLGN4Y Silent p.I383I 0.78 TCGA-D3-A8GL-06 Y 16942233 16942233 G A NLGN4Y Missense_Mutation p.E479K 0.93 tolerated(0.27) benign(0.125) TCGA-D3-A8GM-06 10 100401622 100401622 C T HPSE2 Silent p.Q360Q 0.49 TCGA-D3-A8GM-06 10 102510559 102510559 G A PAX2 Silent p.P107P 0.55 TCGA-D3-A8GM-06 10 102541057 102541057 C T PAX2 Missense_Mutation p.S184F 0.51 deleterious(0) possibly_damaging(0.781) TCGA-D3-A8GM-06 10 103899173 103899173 C T PPRC1 Missense_Mutation p.S303F 0.62 tolerated(0.11) probably_damaging(0.993) TCGA-D3-A8GM-06 10 103907127 103907127 C T PPRC1 Missense_Mutation p.P1460S 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-D3-A8GM-06 10 103987391 103987391 C T ELOVL3 Missense_Mutation p.S37L 0.48 deleterious(0) possibly_damaging(0.653) TCGA-D3-A8GM-06 10 104136771 104136771 G A GBF1 Silent p.E1455E 0.50 TCGA-D3-A8GM-06 10 105201608 105201608 C T PDCD11 Missense_Mutation p.A1528V 0.50 tolerated(0.94) benign(0.001) TCGA-D3-A8GM-06 10 105217959 105217959 A T CALHM1 Missense_Mutation p.S184T 0.55 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 10 105362576 105362576 G A SH3PXD2A Missense_Mutation p.S772L 0.53 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 10 106075426 106075426 G A ITPRIP Silent p.G128G 0.55 TCGA-D3-A8GM-06 10 1061757 1061757 C T GTPBP4 Missense_Mutation p.S558F 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 10 106971002 106971002 G A SORCS3 Missense_Mutation p.S790N 0.55 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GM-06 10 106974262 106974262 C T SORCS3 Missense_Mutation p.A813V 0.49 tolerated(0.23) benign(0.001) TCGA-D3-A8GM-06 10 107012551 107012551 G A SORCS3 Missense_Mutation p.D1042N 0.56 deleterious(0.02) benign(0.056) TCGA-D3-A8GM-06 10 115986880 115986880 A - TDRD1 Frame_Shift_Del p.N1077Ifs*4 0.33 TCGA-D3-A8GM-06 10 116197632 116197632 G A ABLIM1 Missense_Mutation p.L732F 0.52 deleterious(0.02) possibly_damaging(0.683) TCGA-D3-A8GM-06 10 118674916 118674916 G A KIAA1598 Silent p.P425P 0.51 TCGA-D3-A8GM-06 10 118711442 118711442 T C KIAA1598 Missense_Mutation p.K171R 0.43 tolerated(0.24) benign(0.259) TCGA-D3-A8GM-06 10 119078441 119078442 - A PDZD8 Frame_Shift_Ins p.C347Lfs*4 0.23 TCGA-D3-A8GM-06 10 121182734 121182734 G T GRK5 Missense_Mutation p.K132N 0.18 tolerated(0.42) benign(0.003) TCGA-D3-A8GM-06 10 1229085 1229085 C T ADARB2 3'UTR 0.22 TCGA-D3-A8GM-06 10 123274809 123274809 G A FGFR2 Missense_Mutation p.T371I 0.45 tolerated(0.17) benign(0.394) TCGA-D3-A8GM-06 10 123842432 123842432 G A TACC2 Silent p.R139R 0.38 TCGA-D3-A8GM-06 10 123843636 123843636 G A TACC2 Missense_Mutation p.E541K 0.51 benign(0.004) TCGA-D3-A8GM-06 10 123954597 123954597 G A TACC2 Silent p.T1959T 0.51 TCGA-D3-A8GM-06 10 124352003 124352003 G A DMBT1 Missense_Mutation p.D798N 0.60 deleterious(0.03) unknown(0) TCGA-D3-A8GM-06 10 124457964 124457964 A G C10orf120 Missense_Mutation p.L98S 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 10 124907816 124907816 T C HMX2 5'UTR 0.15 TCGA-D3-A8GM-06 10 129172451 129172451 C T DOCK1 Silent p.N1195N 0.32 TCGA-D3-A8GM-06 10 129908704 129908704 C T MKI67 Missense_Mutation p.G785E 0.48 tolerated(0.14) probably_damaging(0.99) TCGA-D3-A8GM-06 10 131639117 131639117 G A EBF3 Missense_Mutation p.P509S 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.536) TCGA-D3-A8GM-06 10 131640552 131640552 G A EBF3 Silent p.I391I 0.56 TCGA-D3-A8GM-06 10 131646736 131646736 C T EBF3 Missense_Mutation p.E341K 0.46 deleterious(0.01) possibly_damaging(0.557) TCGA-D3-A8GM-06 10 131965183 131965183 G A GLRX3 Missense_Mutation p.E218K 0.57 deleterious(0) possibly_damaging(0.891) TCGA-D3-A8GM-06 10 133784058 133784058 G A BNIP3 Intron 0.67 TCGA-D3-A8GM-06 10 134896091 134896091 G A GPR123-AS1 3'Flank 0.60 TCGA-D3-A8GM-06 10 134943042 134943042 G A GPR123 3'UTR 0.58 TCGA-D3-A8GM-06 10 135076489 135076489 C T ADAM8 3'UTR 0.15 TCGA-D3-A8GM-06 10 135095786 135095786 T C TUBGCP2 Missense_Mutation p.T812A 0.58 tolerated(0.15) benign(0.007) TCGA-D3-A8GM-06 10 135209753 135209753 G A RP11-108K14.8 Silent p.A93A 0.09 TCGA-D3-A8GM-06 10 13534745 13534745 G A BEND7 Missense_Mutation p.P183S 0.27 tolerated_low_confidence(0.08) benign(0.03) TCGA-D3-A8GM-06 10 135352553 135352553 C T CYP2E1 3'UTR 0.38 TCGA-D3-A8GM-06 10 14950432 14950433 - T DCLRE1C Frame_Shift_Ins p.R685Kfs*17 0.32 TCGA-D3-A8GM-06 10 15655767 15655767 C T ITGA8 Splice_Site p.X482_splice 0.37 TCGA-D3-A8GM-06 10 15686126 15686126 G A ITGA8 Silent p.S434S 0.34 TCGA-D3-A8GM-06 10 16806457 16806457 A - RSU1 Frame_Shift_Del p.F71Lfs*21 0.25 TCGA-D3-A8GM-06 10 17275649 17275649 G A VIM Missense_Mutation p.E230K 0.28 deleterious(0) possibly_damaging(0.507) TCGA-D3-A8GM-06 10 17891591 17891591 G A MRC1L1 Missense_Mutation p.V358M 0.33 possibly_damaging(0.642) TCGA-D3-A8GM-06 10 18787287 18787287 A G CACNB2 Missense_Mutation p.K113E 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 10 18803285 18803285 C T CACNB2 Missense_Mutation p.P264L 0.34 tolerated(0.08) benign(0.003) TCGA-D3-A8GM-06 10 21101705 21101705 G A NEBL Silent p.I837I 0.29 TCGA-D3-A8GM-06 10 21106608 21106608 C T NEBL Missense_Mutation p.G690E 0.32 tolerated(1) benign(0.014) TCGA-D3-A8GM-06 10 21784600 21784600 G A CASC10 Missense_Mutation p.P114S 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D3-A8GM-06 10 21906121 21906121 T C MLLT10 Silent p.H228H 0.38 TCGA-D3-A8GM-06 10 24762241 24762241 C T KIAA1217 Missense_Mutation p.P311S 0.36 tolerated(0.22) probably_damaging(0.999) TCGA-D3-A8GM-06 10 24762348 24762348 C T KIAA1217 Silent p.I346I 0.36 TCGA-D3-A8GM-06 10 24762349 24762349 C T KIAA1217 Missense_Mutation p.P347S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 10 24762678 24762678 G A KIAA1217 Silent p.R456R 0.52 TCGA-D3-A8GM-06 10 24832822 24832822 G A KIAA1217 Silent p.T1541T 0.27 TCGA-D3-A8GM-06 10 25284717 25284717 C T ENKUR Missense_Mutation p.G102E 0.35 tolerated(0.52) benign(0.001) TCGA-D3-A8GM-06 10 25885641 25885641 G A GPR158 Missense_Mutation p.G690S 0.26 tolerated(0.12) possibly_damaging(0.759) TCGA-D3-A8GM-06 10 25887064 25887064 G A GPR158 Missense_Mutation p.E837K 0.26 tolerated(0.09) benign(0.097) TCGA-D3-A8GM-06 10 26500792 26500792 C T MYO3A Missense_Mutation p.P1584L 0.19 deleterious_low_confidence(0.01) benign(0.005) TCGA-D3-A8GM-06 10 26559570 26559570 G A GAD2 Missense_Mutation p.G326E 0.32 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GM-06 10 27539284 27539284 C T RP11-85G18.6 RNA 0.34 TCGA-D3-A8GM-06 10 28897138 28897138 G A WAC Missense_Mutation p.V315I 0.29 tolerated_low_confidence(0.38) benign(0.001) TCGA-D3-A8GM-06 10 29578045 29578045 G A LYZL1 5'UTR 0.17 TCGA-D3-A8GM-06 10 29813480 29813480 C T SVIL Missense_Mutation p.R836Q 0.32 deleterious(0.03) benign(0.094) TCGA-D3-A8GM-06 10 30317035 30317035 C A KIAA1462 Missense_Mutation p.W681L 0.15 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 10 30317950 30317950 G A KIAA1462 Missense_Mutation p.P376L 0.33 tolerated(0.3) benign(0.029) TCGA-D3-A8GM-06 10 30318224 30318224 G A KIAA1462 Missense_Mutation p.P285S 0.33 tolerated(0.05) possibly_damaging(0.527) TCGA-D3-A8GM-06 10 30629208 30629208 G A MTPAP Nonsense_Mutation p.Q168* 0.32 TCGA-D3-A8GM-06 10 30749736 30749736 C T MAP3K8 Missense_Mutation p.R459W 0.34 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-D3-A8GM-06 10 30986372 30986372 C T SVILP1 RNA 0.38 TCGA-D3-A8GM-06 10 31810176 31810176 C T ZEB1 Missense_Mutation p.S639L 0.41 tolerated(0.19) benign(0.008) TCGA-D3-A8GM-06 10 33208907 33208907 G A ITGB1 Nonsense_Mutation p.Q459* 0.36 TCGA-D3-A8GM-06 10 35896588 35896588 G A GJD4 Silent p.Q49Q 0.30 TCGA-D3-A8GM-06 10 37418833 37418833 C T ANKRD30A Silent p.H22H 0.20 TCGA-D3-A8GM-06 10 37431162 37431162 G A ANKRD30A Missense_Mutation p.R390K 0.27 tolerated(0.8) benign(0.027) TCGA-D3-A8GM-06 10 37433982 37433982 C T ANKRD30A Missense_Mutation p.R429W 0.27 deleterious(0.01) benign(0.428) TCGA-D3-A8GM-06 10 37505242 37505242 G A ANKRD30A Silent p.K945K 0.38 TCGA-D3-A8GM-06 10 465122 465122 G A DIP2C Missense_Mutation p.P208S 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-D3-A8GM-06 10 46968648 46968648 C T SYT15 Nonsense_Mutation p.W96* 0.27 TCGA-D3-A8GM-06 10 48388203 48388203 G A RBP3 Missense_Mutation p.S892F 0.55 tolerated(0.05) possibly_damaging(0.788) TCGA-D3-A8GM-06 10 48388538 48388538 G A RBP3 Silent p.I780I 0.45 TCGA-D3-A8GM-06 10 49386169 49386169 G A FRMPD2 Missense_Mutation p.S939L 0.50 tolerated(0.16) benign(0.007) TCGA-D3-A8GM-06 10 50122122 50122122 C T LRRC18 Missense_Mutation p.D27N 0.54 tolerated(0.06) benign(0.414) TCGA-D3-A8GM-06 10 50531678 50531678 G A C10orf71 Missense_Mutation p.G363E 0.66 tolerated(0.39) benign(0.251) TCGA-D3-A8GM-06 10 50532608 50532608 C T C10orf71 Missense_Mutation p.S673F 0.45 tolerated(0.71) possibly_damaging(0.704) TCGA-D3-A8GM-06 10 5204836 5204836 C T AKR1CL1 Missense_Mutation p.E81K 0.30 deleterious(0) benign(0.006) TCGA-D3-A8GM-06 10 52103778 52103778 C T SGMS1 Missense_Mutation p.G33S 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 10 52595946 52595946 G A A1CF Silent p.V172V 0.53 TCGA-D3-A8GM-06 10 55568591 55568591 G A PCDH15 Missense_Mutation p.S674L 0.50 tolerated_low_confidence(0.24) unknown(0) TCGA-D3-A8GM-06 10 55568784 55568784 C G PCDH15 Missense_Mutation p.G610R 0.50 tolerated_low_confidence(0.28) unknown(0) TCGA-D3-A8GM-06 10 5960358 5960358 C T FBXO18 Missense_Mutation p.P724S 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 10 61835915 61835915 C T ANK3 Missense_Mutation p.R1575Q 0.49 probably_damaging(0.953) TCGA-D3-A8GM-06 10 61868705 61868705 C T ANK3 Missense_Mutation p.R1019Q 0.62 probably_damaging(0.999) TCGA-D3-A8GM-06 10 69682704 69682704 C T HERC4 Missense_Mutation p.G1053D 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 10 70043811 70043811 C T PBLD 3'UTR 0.50 TCGA-D3-A8GM-06 10 71683590 71683590 C T COL13A1 Silent p.P410P 0.47 TCGA-D3-A8GM-06 10 72195326 72195326 C T NODAL Missense_Mutation p.E203K 0.42 tolerated(0.41) benign(0.004) TCGA-D3-A8GM-06 10 73046499 73046499 C T UNC5B Silent p.F202F 0.53 TCGA-D3-A8GM-06 10 73406419 73406419 G A CDH23 Silent p.P498P 0.53 TCGA-D3-A8GM-06 10 73567428 73567428 G A CDH23 Missense_Mutation p.D582N 0.50 tolerated(0.27) possibly_damaging(0.843) TCGA-D3-A8GM-06 10 74684371 74684371 G A OIT3 Missense_Mutation p.E446K 0.26 tolerated(0.07) possibly_damaging(0.745) TCGA-D3-A8GM-06 10 75302881 75302881 G A USP54 Silent p.L128L 0.56 TCGA-D3-A8GM-06 10 75487108 75487108 G A RP11-464F9.1 RNA 0.45 TCGA-D3-A8GM-06 10 78704550 78704550 G A KCNMA1 Silent p.V944V 0.46 TCGA-D3-A8GM-06 10 78850220 78850220 G A KCNMA1 Silent p.F424F 0.67 TCGA-D3-A8GM-06 10 79572072 79572072 G A DLG5 Silent p.S1363S 0.37 TCGA-D3-A8GM-06 10 79572073 79572073 G A DLG5 Missense_Mutation p.S1363F 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 10 79579651 79579651 A G DLG5 Splice_Site p.X1176_splice 0.06 TCGA-D3-A8GM-06 10 79770264 79770264 T A POLR3A Missense_Mutation p.E536V 0.50 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GM-06 10 8116033 8116033 C T GATA3 3'UTR 0.28 TCGA-D3-A8GM-06 10 8116034 8116034 C T GATA3 3'UTR 0.29 TCGA-D3-A8GM-06 10 81702607 81702607 C T SFTPD Silent p.G76G 0.59 TCGA-D3-A8GM-06 10 82126444 82126444 G A DYDC2 Missense_Mutation p.E105K 0.47 tolerated(0.67) benign(0.027) TCGA-D3-A8GM-06 10 88418437 88418437 C T OPN4 Silent p.F218F 0.58 TCGA-D3-A8GM-06 10 88988148 88988148 C T NUTM2A Missense_Mutation p.P171S 0.24 tolerated(0.25) benign(0.432) TCGA-D3-A8GM-06 10 890920 890920 G T LARP4B Missense_Mutation p.S169Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 10 89504934 89504934 G A PAPSS2 Missense_Mutation p.R556Q 0.60 deleterious(0.04) possibly_damaging(0.862) TCGA-D3-A8GM-06 10 90356105 90356106 - T LIPJ Frame_Shift_Ins p.S172Ffs*11 0.26 TCGA-D3-A8GM-06 10 90537967 90537967 G A LIPN Missense_Mutation p.E389K 0.48 tolerated(0.55) benign(0) TCGA-D3-A8GM-06 10 90695027 90695027 C T ACTA2 Missense_Mutation p.E363K 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-D3-A8GM-06 10 91469794 91469794 C T KIF20B Silent p.T154T 0.37 TCGA-D3-A8GM-06 10 91528133 91528134 - A KIF20B Frame_Shift_Ins p.E1655Gfs*11 0.36 TCGA-D3-A8GM-06 10 95790678 95790678 C T PLCE1 5'UTR 0.53 TCGA-D3-A8GM-06 10 96039399 96039399 T - PLCE1 Intron 0.47 TCGA-D3-A8GM-06 10 96039771 96039771 G A PLCE1 Intron 0.39 TCGA-D3-A8GM-06 10 96117944 96117944 T C NOC3L Silent p.E82E 0.46 TCGA-D3-A8GM-06 10 96117947 96117947 C T NOC3L Silent p.E81E 0.47 TCGA-D3-A8GM-06 10 96612579 96612579 C T CYP2C19 Silent p.L461L 0.61 TCGA-D3-A8GM-06 10 96796897 96796897 G A CYP2C8 Silent p.F487F 0.44 TCGA-D3-A8GM-06 10 96827422 96827422 G A CYP2C8 Silent p.F65F 0.49 TCGA-D3-A8GM-06 10 96998379 96998379 G A PDLIM1 Missense_Mutation p.S250L 0.55 tolerated(0.19) benign(0.035) TCGA-D3-A8GM-06 10 97779109 97779109 A - CC2D2B Intron 0.54 TCGA-D3-A8GM-06 10 98741090 98741090 G T C10orf12 5'UTR 0.27 TCGA-D3-A8GM-06 10 99439466 99439466 C - AVPI1 Frame_Shift_Del p.R66Lfs*103 0.28 TCGA-D3-A8GM-06 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.33 tolerated(0.42) possibly_damaging(0.633) TCGA-D3-A8GM-06 11 100169975 100169975 G A CNTN5 Missense_Mutation p.E823K 0.42 tolerated(0.61) probably_damaging(0.999) TCGA-D3-A8GM-06 11 10024117 10024117 G A SBF2 Missense_Mutation p.P247S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 100933363 100933363 G A PGR Missense_Mutation p.S676L 0.42 deleterious(0.03) benign(0.184) TCGA-D3-A8GM-06 11 100962536 100962536 C T PGR Missense_Mutation p.A621T 0.36 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GM-06 11 101353779 101353779 G A TRPC6 Missense_Mutation p.L471F 0.38 tolerated(0.2) benign(0.063) TCGA-D3-A8GM-06 11 101353780 101353780 G A TRPC6 Silent p.L470L 0.38 TCGA-D3-A8GM-06 11 102662066 102662066 C T MMP1 Nonsense_Mutation p.W398* 0.13 TCGA-D3-A8GM-06 11 102666283 102666283 G A MMP1 Silent p.S227S 0.13 TCGA-D3-A8GM-06 11 102709862 102709862 C T MMP3 Missense_Mutation p.D350N 0.34 deleterious(0) benign(0.162) TCGA-D3-A8GM-06 11 102733750 102733750 G A MMP12 RNA 0.41 TCGA-D3-A8GM-06 11 102733905 102733905 T C MMP12 RNA 0.19 TCGA-D3-A8GM-06 11 103191928 103191928 C T DYNC2H1 Missense_Mutation p.P3973S 0.23 benign(0.009) TCGA-D3-A8GM-06 11 10546807 10546807 G A RNF141 Silent p.S122S 0.17 TCGA-D3-A8GM-06 11 106810738 106810738 G A GUCY1A2 Silent p.A218A 0.38 TCGA-D3-A8GM-06 11 107578573 107578573 G A SLN Silent p.S28S 0.31 TCGA-D3-A8GM-06 11 107578574 107578574 G A SLN Missense_Mutation p.S28F 0.30 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-D3-A8GM-06 11 107943094 107943094 C T CUL5 Missense_Mutation p.P304S 0.38 tolerated(0.28) benign(0.007) TCGA-D3-A8GM-06 11 1080549 1080549 C T MUC2 Silent p.S397S 0.37 TCGA-D3-A8GM-06 11 1081123 1081123 G A MUC2 Silent p.V473V 0.15 TCGA-D3-A8GM-06 11 108121562 108121562 G A ATM Missense_Mutation p.R457Q 0.38 deleterious(0.02) possibly_damaging(0.656) TCGA-D3-A8GM-06 11 1090900 1090900 G A MUC2 Silent p.L1265L 0.22 TCGA-D3-A8GM-06 11 110150448 110150448 A T RDX 5'UTR 0.16 TCGA-D3-A8GM-06 11 110485297 110485297 C T ARHGAP20 Silent p.G206G 0.39 TCGA-D3-A8GM-06 11 111156381 111156381 G A C11orf53 Missense_Mutation p.D105N 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 11 111367953 111367953 G A BTG4 Missense_Mutation p.P165S 0.26 deleterious(0.03) possibly_damaging(0.75) TCGA-D3-A8GM-06 11 111386265 111386265 C T C11orf88 Missense_Mutation p.L86F 0.36 tolerated(0.51) benign(0.007) TCGA-D3-A8GM-06 11 111623048 111623048 G A PPP2R1B Silent p.D391D 0.32 TCGA-D3-A8GM-06 11 111781111 111781111 T C CRYAB Silent p.E88E 0.42 TCGA-D3-A8GM-06 11 113085097 113085097 C T NCAM1 Missense_Mutation p.P367L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 113085098 113085098 C G NCAM1 Silent p.P367P 0.20 TCGA-D3-A8GM-06 11 113264212 113264212 G A ANKK1 Silent p.V65V 0.25 TCGA-D3-A8GM-06 11 113281333 113281333 G A DRD2 3'UTR 0.15 TCGA-D3-A8GM-06 11 113283550 113283550 G A DRD2 Missense_Mutation p.P289L 0.14 tolerated(0.32) benign(0.216) TCGA-D3-A8GM-06 11 113614550 113614550 T C ZW10 Silent p.L495L 0.32 TCGA-D3-A8GM-06 11 113675714 113675714 A C USP28 Missense_Mutation p.S819A 0.36 tolerated(0.06) benign(0.001) TCGA-D3-A8GM-06 11 113802536 113802536 G A HTR3B Silent p.E105E 0.35 TCGA-D3-A8GM-06 11 113857415 113857415 C T HTR3A Missense_Mutation p.T300M 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 11 11398902 11398902 G A GALNT18 Silent p.I268I 0.39 TCGA-D3-A8GM-06 11 114121057 114121057 C T ZBTB16 Missense_Mutation p.P601L 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 114168874 114168874 G A NNMT Missense_Mutation p.G119E 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 116633738 116633738 G A BUD13 Silent p.P189P 0.14 TCGA-D3-A8GM-06 11 116633739 116633739 G A BUD13 Missense_Mutation p.P189L 0.14 tolerated(0.06) benign(0.102) TCGA-D3-A8GM-06 11 117060739 117060739 C T SIDT2 Silent p.L497L 0.24 TCGA-D3-A8GM-06 11 117090453 117090453 G A PCSK7 Nonsense_Mutation p.Q393* 0.17 TCGA-D3-A8GM-06 11 117100413 117100413 C T PCSK7 Missense_Mutation p.G50R 0.47 tolerated(0.45) benign(0.008) TCGA-D3-A8GM-06 11 117263303 117263303 T C CEP164 Missense_Mutation p.V818A 0.17 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 11 117266369 117266369 G A CEP164 Missense_Mutation p.R1007H 0.22 tolerated(0.15) benign(0.015) TCGA-D3-A8GM-06 11 117307851 117307851 C T DSCAML1 Silent p.L1629L 0.15 TCGA-D3-A8GM-06 11 117309654 117309654 G A DSCAML1 Missense_Mutation p.S1457L 0.40 deleterious(0) probably_damaging(0.915) TCGA-D3-A8GM-06 11 117376296 117376296 G A DSCAML1 Silent p.I705I 0.26 TCGA-D3-A8GM-06 11 118498513 118498513 C A PHLDB1 Missense_Mutation p.P325H 0.21 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GM-06 11 118516529 118516529 C A PHLDB1 Missense_Mutation p.L1165I 0.22 deleterious(0) benign(0.399) TCGA-D3-A8GM-06 11 118629605 118629605 G A DDX6 Missense_Mutation p.H291Y 0.20 tolerated(0.68) benign(0.009) TCGA-D3-A8GM-06 11 118773100 118773100 G A BCL9L Missense_Mutation p.P451L 0.10 benign(0.001) TCGA-D3-A8GM-06 11 119024797 119024797 C T ABCG4 Silent p.I100I 0.40 TCGA-D3-A8GM-06 11 119050802 119050802 C T NLRX1 Missense_Mutation p.S691F 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 11 119057009 119057009 G A PDZD3 Intron 0.44 TCGA-D3-A8GM-06 11 119103331 119103331 G A CBL Missense_Mutation p.M123I 0.43 tolerated(0.26) benign(0.002) TCGA-D3-A8GM-06 11 119149241 119149241 C T CBL Missense_Mutation p.P417S 0.41 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 11 119228770 119228770 C T USP2 Missense_Mutation p.R448Q 0.19 tolerated(0.1) benign(0.019) TCGA-D3-A8GM-06 11 120007977 120007977 G A TRIM29 Missense_Mutation p.H255Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 120348191 120348191 A G ARHGEF12 Missense_Mutation p.K1163R 0.22 tolerated_low_confidence(0.16) benign(0.315) TCGA-D3-A8GM-06 11 120998618 120998618 C T TECTA Silent p.C644C 0.08 TCGA-D3-A8GM-06 11 121037468 121037468 G A TECTA Silent p.G1855G 0.24 TCGA-D3-A8GM-06 11 121039557 121039557 C T TECTA Silent p.I1974I 0.16 TCGA-D3-A8GM-06 11 121177856 121177856 C T SC5D Missense_Mutation p.P179S 0.19 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 11 121393402 121393402 C T SORL1 Silent p.I504I 0.19 TCGA-D3-A8GM-06 11 121428098 121428098 C T SORL1 Missense_Mutation p.L883F 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 11 121444982 121444982 C T SORL1 Missense_Mutation p.R1124C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 121478852 121478852 G A SORL1 Missense_Mutation p.D1736N 0.20 tolerated(0.26) benign(0.068) TCGA-D3-A8GM-06 11 12225924 12225924 C T MICAL2 Missense_Mutation p.P131L 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 123676125 123676125 C T OR6M1 Silent p.R311R 0.17 TCGA-D3-A8GM-06 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GM-06 11 123810703 123810703 C T OR4D5 Missense_Mutation p.S127F 0.37 tolerated(0.06) benign(0.424) TCGA-D3-A8GM-06 11 123848237 123848237 C T OR10S1 Silent p.G54G 0.31 TCGA-D3-A8GM-06 11 123886406 123886406 T C OR10G4 Missense_Mutation p.L42P 0.25 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GM-06 11 123886617 123886617 C T OR10G4 Silent p.F112F 0.15 TCGA-D3-A8GM-06 11 123909429 123909429 G A OR10G7 Missense_Mutation p.H94Y 0.19 tolerated(0.1) benign(0.002) TCGA-D3-A8GM-06 11 124189283 124189283 C T OR8D2 Missense_Mutation p.E271K 0.37 tolerated(0.19) benign(0.046) TCGA-D3-A8GM-06 11 124190024 124190024 G A OR8D2 Nonsense_Mutation p.Q24* 0.15 TCGA-D3-A8GM-06 11 124252862 124252862 G A OR8B2 Silent p.I126I 0.50 TCGA-D3-A8GM-06 11 124253141 124253141 C T OR8B2 Silent p.V33V 0.12 TCGA-D3-A8GM-06 11 124412634 124412634 C T OR8B12 Missense_Mutation p.R306K 0.34 tolerated_low_confidence(0.39) benign(0.001) TCGA-D3-A8GM-06 11 124412759 124412759 G A OR8B12 Silent p.I264I 0.38 TCGA-D3-A8GM-06 11 124413290 124413290 C T OR8B12 Silent p.R87R 0.45 TCGA-D3-A8GM-06 11 124748589 124748589 C T ROBO3 Missense_Mutation p.P1144S 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A8GM-06 11 124761599 124761599 C T ROBO4 Silent p.G549G 0.10 TCGA-D3-A8GM-06 11 124956285 124956285 A G SLC37A2 Intron 0.20 TCGA-D3-A8GM-06 11 124972037 124972037 C T TMEM218 Missense_Mutation p.G34E 0.26 deleterious(0) possibly_damaging(0.784) TCGA-D3-A8GM-06 11 124972038 124972038 C T TMEM218 Missense_Mutation p.G34R 0.26 deleterious(0.02) benign(0.119) TCGA-D3-A8GM-06 11 125359265 125359265 A G FEZ1 Intron 0.27 TCGA-D3-A8GM-06 11 1263068 1263068 T G MUC5B Missense_Mutation p.L1653R 0.29 unknown(0) TCGA-D3-A8GM-06 11 128350333 128350334 - C ETS1 Frame_Shift_Ins p.Q293Pfs*5 0.20 TCGA-D3-A8GM-06 11 128842329 128842329 G A ARHGAP32 Intron 0.40 TCGA-D3-A8GM-06 11 128850604 128850604 G A ARHGAP32 Missense_Mutation p.P593L 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A8GM-06 11 129747229 129747229 A - NFRKB Frame_Shift_Del p.Q547Rfs*29 0.20 TCGA-D3-A8GM-06 11 130784933 130784933 G A SNX19 Missense_Mutation p.P301L 0.20 deleterious(0.01) benign(0.06) TCGA-D3-A8GM-06 11 132180051 132180051 G A NTM Missense_Mutation p.G236E 0.28 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 11 134177062 134177062 C T GLB1L3 Silent p.F307F 0.18 TCGA-D3-A8GM-06 11 134252672 134252672 C T B3GAT1 Missense_Mutation p.E284K 0.17 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 11 13716318 13716318 T C FAR1 Silent p.V2V 0.20 TCGA-D3-A8GM-06 11 14280880 14280880 C T RP11-21L19.1 3'Flank 0.37 TCGA-D3-A8GM-06 11 14282206 14282206 G A RP11-21L19.1 3'Flank 0.39 TCGA-D3-A8GM-06 11 16811378 16811378 G A PLEKHA7 Missense_Mutation p.P1034S 0.34 tolerated(1) benign(0.012) TCGA-D3-A8GM-06 11 16838494 16838494 G A PLEKHA7 Silent p.I573I 0.40 TCGA-D3-A8GM-06 11 16863219 16863219 G A PLEKHA7 Silent p.G249G 0.14 TCGA-D3-A8GM-06 11 17449896 17449896 G A ABCC8 Silent p.T660T 0.17 TCGA-D3-A8GM-06 11 17530948 17530948 G A USH1C Silent p.P656P 0.23 TCGA-D3-A8GM-06 11 17530949 17530949 G A USH1C Missense_Mutation p.P656L 0.22 tolerated_low_confidence(0.24) benign(0.001) TCGA-D3-A8GM-06 11 17548864 17548864 G A USH1C Silent p.I134I 0.50 TCGA-D3-A8GM-06 11 17793736 17793736 C T KCNC1 Silent p.Y365Y 0.42 TCGA-D3-A8GM-06 11 17794150 17794150 G A KCNC1 Intron 0.26 TCGA-D3-A8GM-06 11 18042421 18042421 C T TPH1 3'UTR 0.19 TCGA-D3-A8GM-06 11 18159829 18159829 C T MRGPRX3 3'UTR 0.74 TCGA-D3-A8GM-06 11 18313248 18313248 G A HPS5 Silent p.C727C 0.19 TCGA-D3-A8GM-06 11 1857196 1857196 C T SYT8 Silent p.F127F 0.35 TCGA-D3-A8GM-06 11 1862685 1862685 G A TNNI2 Splice_Site p.X152_splice 0.23 TCGA-D3-A8GM-06 11 18793615 18793615 C T PTPN5 5'UTR 0.30 TCGA-D3-A8GM-06 11 1973428 1973428 G A MRPL23 Missense_Mutation p.R71Q 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-D3-A8GM-06 11 20065564 20065564 C T NAV2 Missense_Mutation p.S1005F 0.41 tolerated(0.27) possibly_damaging(0.677) TCGA-D3-A8GM-06 11 20083872 20083872 C A NAV2 Silent p.S1673S 0.21 TCGA-D3-A8GM-06 11 21594915 21594915 G A NELL1 Nonsense_Mutation p.W781* 0.23 TCGA-D3-A8GM-06 11 24927590 24927590 C A LUZP2 Missense_Mutation p.H150Q 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GM-06 11 28042773 28042773 T G KIF18A Missense_Mutation p.N891H 0.29 deleterious(0.03) possibly_damaging(0.448) TCGA-D3-A8GM-06 11 30439181 30439181 C T MPPED2 Splice_Site p.X179_splice 0.39 TCGA-D3-A8GM-06 11 32410717 32410717 G A WT1 Missense_Mutation p.P481S 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 3249833 3249833 G A MRGPRE Missense_Mutation p.A65V 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.15 TCGA-D3-A8GM-06 11 32860464 32860464 A G PRRG4 Missense_Mutation p.T102A 0.22 tolerated(0.66) benign(0.002) TCGA-D3-A8GM-06 11 35492200 35492200 C T PAMR1 Missense_Mutation p.D221N 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 35685263 35685263 C T TRIM44 Missense_Mutation p.P202S 0.23 tolerated(0.25) unknown(0) TCGA-D3-A8GM-06 11 36614077 36614077 G A RAG2 3'UTR 0.31 TCGA-D3-A8GM-06 11 379897 379897 C T B4GALNT4 Silent p.F840F 0.36 TCGA-D3-A8GM-06 11 40137590 40137590 C T LRRC4C Missense_Mutation p.E85K 0.37 deleterious(0.03) possibly_damaging(0.722) TCGA-D3-A8GM-06 11 4076769 4076769 C T STIM1 Silent p.T133T 0.36 TCGA-D3-A8GM-06 11 43702515 43702515 C T HSD17B12 Silent p.G46G 0.38 TCGA-D3-A8GM-06 11 43923217 43923217 T A ALKBH3 Missense_Mutation p.I204N 0.45 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 44070066 44070066 A G ACCSL Silent p.K160K 0.42 TCGA-D3-A8GM-06 11 45203405 45203405 C A PRDM11 Missense_Mutation p.P30T 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A8GM-06 11 4567310 4567310 T C OR52M1 Missense_Mutation p.V297A 0.14 deleterious(0.02) benign(0.011) TCGA-D3-A8GM-06 11 45948044 45948044 G A GYLTL1B Missense_Mutation p.E354K 0.29 tolerated(0.09) benign(0.097) TCGA-D3-A8GM-06 11 46332603 46332603 C T CREB3L1 Missense_Mutation p.P206S 0.19 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 11 46387882 46387882 G A DGKZ Missense_Mutation p.V26M 0.33 tolerated_low_confidence(0.07) benign(0.006) TCGA-D3-A8GM-06 11 4673769 4673769 C T OR51E1 Missense_Mutation p.P5S 0.13 tolerated(0.45) benign(0.004) TCGA-D3-A8GM-06 11 46748278 46748278 C T F2 Silent p.L341L 0.17 TCGA-D3-A8GM-06 11 46786725 46786725 G A CKAP5 Missense_Mutation p.P1165S 0.43 tolerated(0.41) benign(0.003) TCGA-D3-A8GM-06 11 47367826 47367826 C T MYBPC3 Missense_Mutation p.G341D 0.14 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 11 47381415 47381415 G A SPI1 Missense_Mutation p.L108F 0.17 tolerated(0.07) possibly_damaging(0.576) TCGA-D3-A8GM-06 11 47444475 47444475 T C PSMC3 Missense_Mutation p.N214S 0.35 tolerated(0.18) benign(0.009) TCGA-D3-A8GM-06 11 48134417 48134417 G A PTPRJ Silent p.Q78Q 0.17 TCGA-D3-A8GM-06 11 48238587 48238587 G A OR4B1 Missense_Mutation p.A76T 0.15 tolerated(0.17) benign(0.047) TCGA-D3-A8GM-06 11 48266728 48266728 T C OR4X2 Missense_Mutation p.F25L 0.33 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 11 48286099 48286099 G A OR4X1 Silent p.E229E 0.09 TCGA-D3-A8GM-06 11 48346920 48346920 T G OR4C3 Missense_Mutation p.M143R 0.05 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GM-06 11 48347200 48347200 C T OR4C3 Silent p.F236F 0.25 TCGA-D3-A8GM-06 11 48347239 48347239 C T OR4C3 Silent p.S249S 0.08 TCGA-D3-A8GM-06 11 4842735 4842735 G A OR51F2 Nonsense_Mutation p.W40* 0.40 TCGA-D3-A8GM-06 11 48510872 48510872 C T OR4A47 Silent p.F176F 0.17 TCGA-D3-A8GM-06 11 488552 488552 C T PTDSS2 Silent p.C253C 0.20 TCGA-D3-A8GM-06 11 49186318 49186318 T C FOLH1 Missense_Mutation p.Y460C 0.09 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 4928835 4928835 C T OR51A7 Missense_Mutation p.P79L 0.40 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 11 4929405 4929405 C T OR51A7 Missense_Mutation p.P269L 0.19 deleterious(0.04) benign(0.169) TCGA-D3-A8GM-06 11 49597756 49597756 C T RP11-707M1.1 RNA 0.30 TCGA-D3-A8GM-06 11 4967879 4967879 G A OR51A4 Missense_Mutation p.S151F 0.11 tolerated(0.19) benign(0.005) TCGA-D3-A8GM-06 11 4976492 4976492 G A OR51A2 Missense_Mutation p.S151F 0.21 tolerated(0.18) benign(0.008) TCGA-D3-A8GM-06 11 4976938 4976938 G A OR51A2 Silent p.S2S 0.28 TCGA-D3-A8GM-06 11 49805603 49805603 G A RP11-707M1.1 RNA 0.25 TCGA-D3-A8GM-06 11 49831670 49831670 C T RP11-707M1.1 RNA 0.33 TCGA-D3-A8GM-06 11 50003348 50003348 C T OR4C12 Silent p.G230G 0.26 TCGA-D3-A8GM-06 11 5009461 5009461 G A MMP26 Missense_Mutation p.R7K 0.37 tolerated(0.49) benign(0.001) TCGA-D3-A8GM-06 11 5068338 5068338 C T OR52J3 Missense_Mutation p.R195C 0.17 deleterious(0.01) benign(0.047) TCGA-D3-A8GM-06 11 51412124 51412124 G A OR4A5 Missense_Mutation p.S91F 0.40 deleterious_low_confidence(0.02) benign(0.295) TCGA-D3-A8GM-06 11 51515668 51515668 C T OR4C46 Silent p.H129H 0.42 TCGA-D3-A8GM-06 11 5153106 5153106 A C OR52A5 Missense_Mutation p.L256R 0.30 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GM-06 11 5254190 5254190 G A HBD 3'UTR 0.39 TCGA-D3-A8GM-06 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.18 tolerated(1) benign(0.04) TCGA-D3-A8GM-06 11 5290764 5290764 T A HBE1 Missense_Mutation p.M79L 0.35 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 11 5323102 5323102 G A OR51B4 Silent p.I25I 0.21 TCGA-D3-A8GM-06 11 5363896 5363896 G A OR51B5 Missense_Mutation p.P287S 0.33 deleterious(0.02) probably_damaging(0.931) TCGA-D3-A8GM-06 11 5410988 5410988 C T OR51M1 Silent p.S120S 0.37 TCGA-D3-A8GM-06 11 5444354 5444354 C T OR51Q1 Silent p.F308F 0.47 TCGA-D3-A8GM-06 11 5461833 5461833 C T OR51I1 Silent p.G304G 0.35 TCGA-D3-A8GM-06 11 55111263 55111263 C T OR4A16 Missense_Mutation p.T196I 0.18 tolerated_low_confidence(0.38) benign(0.208) TCGA-D3-A8GM-06 11 55111377 55111377 C T OR4A16 Missense_Mutation p.A234V 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.764) TCGA-D3-A8GM-06 11 55135643 55135643 C T OR4A15 Missense_Mutation p.S95L 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GM-06 11 55371220 55371220 C T OR4C11 Missense_Mutation p.M210I 0.51 tolerated(0.61) benign(0.001) TCGA-D3-A8GM-06 11 55418734 55418734 G A OR4S2 Missense_Mutation p.D119N 0.53 deleterious(0.01) benign(0.113) TCGA-D3-A8GM-06 11 55432990 55432990 G A OR4C6 Missense_Mutation p.M116I 0.38 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-D3-A8GM-06 11 55433495 55433495 T C OR4C6 Missense_Mutation p.Y285H 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 55541140 55541140 C T OR5D13 Missense_Mutation p.S76F 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-D3-A8GM-06 11 55541690 55541690 C T OR5D13 Silent p.F259F 0.11 TCGA-D3-A8GM-06 11 55563273 55563273 C T OR5D14 Missense_Mutation p.P81L 0.16 deleterious(0.01) possibly_damaging(0.809) TCGA-D3-A8GM-06 11 55563652 55563652 C T OR5D14 Silent p.F207F 0.30 TCGA-D3-A8GM-06 11 55587286 55587286 T C OR5D18 Missense_Mutation p.Y61H 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 11 55587967 55587967 C T OR5D18 Missense_Mutation p.P288S 0.22 deleterious(0.01) possibly_damaging(0.74) TCGA-D3-A8GM-06 11 55594895 55594895 C T OR5L2 Silent p.S67S 0.17 TCGA-D3-A8GM-06 11 55595599 55595600 - A OR5L2 Frame_Shift_Ins p.V304Sfs*? 0.11 TCGA-D3-A8GM-06 11 55606511 55606511 C T OR5D16 Missense_Mutation p.S95L 0.18 deleterious(0.01) possibly_damaging(0.852) TCGA-D3-A8GM-06 11 55606649 55606649 A T OR5D16 Missense_Mutation p.K141I 0.17 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GM-06 11 55607079 55607079 C T OR5D16 Silent p.I284I 0.27 TCGA-D3-A8GM-06 11 55655605 55655605 G A TRIM51 Missense_Mutation p.R202Q 0.32 tolerated(0.57) benign(0.001) TCGA-D3-A8GM-06 11 55681147 55681147 C T OR5W2 Silent p.L304L 0.18 TCGA-D3-A8GM-06 11 55681212 55681212 G A OR5W2 Missense_Mutation p.P283S 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 11 55735257 55735257 G A OR10AG1 Missense_Mutation p.A228V 0.30 deleterious(0.02) possibly_damaging(0.715) TCGA-D3-A8GM-06 11 55735519 55735519 T C OR10AG1 Missense_Mutation p.T141A 0.16 deleterious(0.02) benign(0.017) TCGA-D3-A8GM-06 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.44 TCGA-D3-A8GM-06 11 55890328 55890328 G T OR8H3 Silent p.V160V 0.19 TCGA-D3-A8GM-06 11 55890678 55890678 T C OR8H3 Missense_Mutation p.F277S 0.43 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 11 55904716 55904716 G A OR8J3 Missense_Mutation p.S160L 0.17 deleterious(0) possibly_damaging(0.515) TCGA-D3-A8GM-06 11 55927214 55927214 C T OR8K5 Missense_Mutation p.E194K 0.16 deleterious_low_confidence(0.02) benign(0.143) TCGA-D3-A8GM-06 11 55999933 55999933 G A OR5T2 Silent p.G243G 0.15 TCGA-D3-A8GM-06 11 56000423 56000423 C T OR5T2 Missense_Mutation p.G80E 0.21 deleterious(0) benign(0.417) TCGA-D3-A8GM-06 11 56020425 56020425 C T OR5T3 Silent p.F250F 0.39 TCGA-D3-A8GM-06 11 56020437 56020437 C T OR5T3 Silent p.S254S 0.14 TCGA-D3-A8GM-06 11 56086418 56086418 G A OR8K3 Silent p.L212L 0.42 TCGA-D3-A8GM-06 11 56127806 56127806 C T OR8J1 Silent p.F28F 0.19 TCGA-D3-A8GM-06 11 56128269 56128269 C T OR8J1 Missense_Mutation p.P183S 0.34 deleterious(0.02) possibly_damaging(0.483) TCGA-D3-A8GM-06 11 5624605 5624605 C T TRIM6 Silent p.L49L 0.18 TCGA-D3-A8GM-06 11 56344943 56344943 G A OR5M10 Silent p.F85F 0.11 TCGA-D3-A8GM-06 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.40 TCGA-D3-A8GM-06 11 56380892 56380892 C T OR5M1 Silent p.G29G 0.28 TCGA-D3-A8GM-06 11 56408981 56408981 C T OR5AP2 Nonsense_Mutation p.W312* 0.17 TCGA-D3-A8GM-06 11 56510443 56510443 G A OR9G4 Missense_Mutation p.S282F 0.38 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 11 56949561 56949561 C T LRRC55 Missense_Mutation p.S65F 0.19 tolerated(0.73) benign(0.176) TCGA-D3-A8GM-06 11 56954888 56954888 C T LRRC55 Silent p.F320F 0.31 TCGA-D3-A8GM-06 11 5717443 5717443 G A TRIM22 5'UTR 0.38 TCGA-D3-A8GM-06 11 57185322 57185324 GAA - SLC43A3 In_Frame_Del p.F190del 0.12 TCGA-D3-A8GM-06 11 57322047 57322047 G A UBE2L6 Missense_Mutation p.P58L 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 11 5799027 5799027 G A OR52N5 Missense_Mutation p.P280S 0.51 tolerated(0.78) benign(0.014) TCGA-D3-A8GM-06 11 5799066 5799066 T G OR52N5 Missense_Mutation p.T267P 0.48 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 11 57996293 57996293 G A OR10Q1 Missense_Mutation p.R19C 0.44 tolerated(0.16) benign(0.021) TCGA-D3-A8GM-06 11 58206803 58206803 C G OR5B12 Silent p.V274V 0.13 TCGA-D3-A8GM-06 11 5842084 5842084 G A OR52N2 Silent p.G173G 0.17 TCGA-D3-A8GM-06 11 5842342 5842342 C T OR52N2 Silent p.F259F 0.28 TCGA-D3-A8GM-06 11 58722704 58722704 G A GLYATL1 Silent p.V154V 0.43 TCGA-D3-A8GM-06 11 58723493 58723493 C T GLYATL1 Missense_Mutation p.P332L 0.13 tolerated_low_confidence(0.13) benign(0.016) TCGA-D3-A8GM-06 11 5878429 5878429 G A OR52E8 Silent p.L168L 0.20 TCGA-D3-A8GM-06 11 59190197 59190197 G A OR5A2 Missense_Mutation p.S77F 0.08 deleterious(0) possibly_damaging(0.714) TCGA-D3-A8GM-06 11 59417053 59417053 A C PATL1 Missense_Mutation p.Y539D 0.33 deleterious(0.01) possibly_damaging(0.889) TCGA-D3-A8GM-06 11 5968648 5968648 C T OR56A3 Silent p.S24S 0.38 TCGA-D3-A8GM-06 11 5969304 5969304 G T OR56A3 Missense_Mutation p.S243I 0.16 deleterious(0) possibly_damaging(0.853) TCGA-D3-A8GM-06 11 5969316 5969316 C T OR56A3 Missense_Mutation p.S247F 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 6007894 6007894 C T OR52L1 Silent p.L89L 0.33 TCGA-D3-A8GM-06 11 60559765 60559765 A G MS4A10 Missense_Mutation p.T111A 0.45 tolerated(0.33) benign(0.085) TCGA-D3-A8GM-06 11 60696268 60696268 G - TMEM132A Frame_Shift_Del p.G236Vfs*21 0.27 TCGA-D3-A8GM-06 11 61490358 61490358 C T DAGLA Missense_Mutation p.A112V 0.39 deleterious(0.04) probably_damaging(0.989) TCGA-D3-A8GM-06 11 61630777 61630777 T C FADS2 Missense_Mutation p.V335A 0.44 tolerated(0.12) benign(0.05) TCGA-D3-A8GM-06 11 61643621 61643621 G A FADS3 Silent p.N374N 0.33 TCGA-D3-A8GM-06 11 61643622 61643622 T A FADS3 Missense_Mutation p.N374I 0.36 deleterious(0) possibly_damaging(0.588) TCGA-D3-A8GM-06 11 6190636 6190636 G A OR52B2 Silent p.H307H 0.11 TCGA-D3-A8GM-06 11 62012186 62012186 C T SCGB1D2 3'UTR 0.19 TCGA-D3-A8GM-06 11 62292574 62292574 C T AHNAK Silent p.V3105V 0.39 TCGA-D3-A8GM-06 11 6232201 6232201 G A C11orf42 Missense_Mutation p.D311N 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 6232271 6232271 G A C11orf42 Silent p.%3D 0.11 TCGA-D3-A8GM-06 11 6232832 6232832 G A FAM160A2 Silent p.I955I 0.37 TCGA-D3-A8GM-06 11 62398540 62398540 G A GANAB Missense_Mutation p.S393F 0.43 deleterious(0.01) possibly_damaging(0.601) TCGA-D3-A8GM-06 11 6239923 6239923 G A FAM160A2 Nonsense_Mutation p.R448* 0.21 TCGA-D3-A8GM-06 11 62607067 62607067 C T WDR74 5'UTR 0.43 TCGA-D3-A8GM-06 11 62607074 62607074 C T WDR74 5'UTR 0.19 TCGA-D3-A8GM-06 11 62931398 62931398 G A SLC22A25 Silent p.L514L 0.17 TCGA-D3-A8GM-06 11 62931493 62931493 C T SLC22A25 Missense_Mutation p.A483T 0.27 deleterious(0.01) possibly_damaging(0.661) TCGA-D3-A8GM-06 11 62931494 62931494 C T SLC22A25 Silent p.L482L 0.27 TCGA-D3-A8GM-06 11 63174091 63174091 G T SLC22A9 Missense_Mutation p.W399L 0.45 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 11 63283790 63283790 G A LGALS12 Missense_Mutation p.M313I 0.17 tolerated(0.42) benign(0) TCGA-D3-A8GM-06 11 63403022 63403022 G A ATL3 Missense_Mutation p.P340L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 63586115 63586115 C T C11orf84 Missense_Mutation p.P242S 0.41 tolerated(0.24) benign(0.052) TCGA-D3-A8GM-06 11 6431895 6431895 G A APBB1 Missense_Mutation p.S228F 0.20 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 11 64329549 64329549 C T SLC22A11 Missense_Mutation p.P191S 0.36 tolerated(0.07) possibly_damaging(0.764) TCGA-D3-A8GM-06 11 64676493 64676493 G A ATG2A Silent p.S778S 0.47 TCGA-D3-A8GM-06 11 65272267 65272267 C T MALAT1 RNA 0.44 TCGA-D3-A8GM-06 11 65304138 65304138 C T SCYL1 Missense_Mutation p.S578F 0.23 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GM-06 11 65351065 65351065 C A EHBP1L1 Silent p.A974A 0.33 TCGA-D3-A8GM-06 11 65373447 65373447 G A MAP3K11 Missense_Mutation p.S570F 0.33 deleterious(0) benign(0.261) TCGA-D3-A8GM-06 11 65385705 65385705 C T PCNXL3 Missense_Mutation p.T291M 0.19 tolerated(0.19) benign(0.002) TCGA-D3-A8GM-06 11 65402907 65402907 C T PCNXL3 Silent p.F1724F 0.14 TCGA-D3-A8GM-06 11 65429539 65429539 G A RELA Missense_Mutation p.P19S 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GM-06 11 65616962 65616962 C T SNX32 Missense_Mutation p.S17L 0.18 deleterious(0) benign(0.001) TCGA-D3-A8GM-06 11 65623186 65623186 C T CFL1 Silent p.A109A 0.31 TCGA-D3-A8GM-06 11 65664321 65664321 G T FOSL1 Missense_Mutation p.L86M 0.18 tolerated(0.16) benign(0.021) TCGA-D3-A8GM-06 11 65721089 65721089 C A TSGA10IP RNA 0.38 TCGA-D3-A8GM-06 11 65793927 65793927 C T CATSPER1 5'UTR 0.50 TCGA-D3-A8GM-06 11 6590031 6590031 C T DNHD1 Silent p.L4266L 0.60 TCGA-D3-A8GM-06 11 66190662 66190662 C T NPAS4 Missense_Mutation p.P256L 0.13 deleterious(0.05) probably_damaging(1) TCGA-D3-A8GM-06 11 66191716 66191716 C T NPAS4 Missense_Mutation p.S452F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-D3-A8GM-06 11 66373272 66373272 G A CCS Silent p.R257R 0.22 TCGA-D3-A8GM-06 11 6661175 6661175 G - DCHS1 Frame_Shift_Del p.P557Lfs*2 0.21 TCGA-D3-A8GM-06 11 6662202 6662202 G A DCHS1 Nonsense_Mutation p.R215* 0.47 TCGA-D3-A8GM-06 11 66633721 66633721 G A PC Silent p.I374I 0.23 TCGA-D3-A8GM-06 11 66807506 66807506 C T SYT12 Silent p.F151F 0.23 TCGA-D3-A8GM-06 11 66811214 66811214 G A SYT12 Missense_Mutation p.D243N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 11 67432880 67432880 G A ALDH3B2 Silent p.D194D 0.21 TCGA-D3-A8GM-06 11 67803828 67803828 C T NDUFS8 Missense_Mutation p.P161S 0.46 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-D3-A8GM-06 11 67933500 67933500 G A SUV420H1 Intron 0.22 TCGA-D3-A8GM-06 11 6806719 6806719 C A OR2AG1 Missense_Mutation p.L151M 0.12 deleterious(0.05) possibly_damaging(0.619) TCGA-D3-A8GM-06 11 68216469 68216469 G A LRP5 Silent p.S1593S 0.24 TCGA-D3-A8GM-06 11 68478386 68478386 C T MTL5 Silent p.L430L 0.13 TCGA-D3-A8GM-06 11 68522208 68522208 C T CPT1A 3'Flank 0.41 TCGA-D3-A8GM-06 11 6866955 6866955 C T OR10A5 Silent p.L14L 0.18 TCGA-D3-A8GM-06 11 69950167 69950167 C T ANO1 Silent p.I201I 0.38 TCGA-D3-A8GM-06 11 70031712 70031712 G A ANO1 Missense_Mutation p.E869K 0.20 deleterious(0) possibly_damaging(0.823) TCGA-D3-A8GM-06 11 70281282 70281282 C T CTTN Intron 0.48 TCGA-D3-A8GM-06 11 70332927 70332927 G A SHANK2 Silent p.F1158F 0.37 TCGA-D3-A8GM-06 11 7063633 7063633 T C NLRP14 Missense_Mutation p.Y126H 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 7063643 7063643 G T NLRP14 Missense_Mutation p.R129I 0.35 tolerated(0.24) benign(0.012) TCGA-D3-A8GM-06 11 71146530 71146530 A G DHCR7 Missense_Mutation p.L440P 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 11 71192995 71192995 C T NADSYN1 Silent p.G358G 0.17 TCGA-D3-A8GM-06 11 71850691 71850691 C T FOLR3 Missense_Mutation p.P227L 0.43 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 11 73765717 73765717 C T C2CD3 Splice_Site p.X1697_splice 0.43 TCGA-D3-A8GM-06 11 73988084 73988084 C T P4HA3 Silent p.Q427Q 0.39 TCGA-D3-A8GM-06 11 74632289 74632289 G A XRRA1 Missense_Mutation p.S201F 0.23 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A8GM-06 11 76207306 76207306 C T C11orf30 Missense_Mutation p.P386S 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-D3-A8GM-06 11 76371254 76371254 C T LRRC32 Silent p.G461G 0.19 TCGA-D3-A8GM-06 11 76371946 76371946 C T LRRC32 Missense_Mutation p.E231K 0.35 tolerated(0.06) possibly_damaging(0.754) TCGA-D3-A8GM-06 11 76372491 76372491 G A LRRC32 Missense_Mutation p.P49L 0.29 tolerated(0.78) benign(0.002) TCGA-D3-A8GM-06 11 76924975 76924975 C T MYO7A Missense_Mutation p.T2170I 0.37 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 11 77727772 77727772 T C KCTD14 Missense_Mutation p.D212G 0.25 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 11 77921057 77921057 T C USP35 Missense_Mutation p.V719A 0.29 tolerated(0.75) unknown(0) TCGA-D3-A8GM-06 11 7817606 7817606 C T OR5P2 Missense_Mutation p.G295E 0.18 tolerated(0.79) benign(0.002) TCGA-D3-A8GM-06 11 78413308 78413308 G A TENM4 Silent p.V1450V 0.20 TCGA-D3-A8GM-06 11 7984965 7984965 C T NLRP10 Silent p.K26K 0.17 TCGA-D3-A8GM-06 11 800377 800377 C T PIDD Missense_Mutation p.V706M 0.52 deleterious(0) possibly_damaging(0.891) TCGA-D3-A8GM-06 11 82611324 82611324 G T PRCP Missense_Mutation p.L41I 0.10 tolerated_low_confidence(0.44) benign(0.005) TCGA-D3-A8GM-06 11 82924182 82924182 C T ANKRD42 Intron 0.20 TCGA-D3-A8GM-06 11 84028118 84028118 G A DLG2 Intron 0.18 TCGA-D3-A8GM-06 11 8496504 8496504 G A STK33 5'UTR 0.12 TCGA-D3-A8GM-06 11 85445783 85445783 C T SYTL2 Missense_Mutation p.E196K 0.32 tolerated(0.38) benign(0.011) TCGA-D3-A8GM-06 11 8950972 8950972 C T C11orf16 Silent p.R92R 0.29 TCGA-D3-A8GM-06 11 89774565 89774565 C T TRIM49C Silent p.I402I 0.12 TCGA-D3-A8GM-06 11 92085282 92085282 G A FAT3 Missense_Mutation p.D2N 0.48 benign(0) TCGA-D3-A8GM-06 11 92087928 92087928 G A FAT3 Missense_Mutation p.G884R 0.15 probably_damaging(1) TCGA-D3-A8GM-06 11 92087929 92087929 G A FAT3 Missense_Mutation p.G884E 0.15 probably_damaging(1) TCGA-D3-A8GM-06 11 92523265 92523265 C T FAT3 Missense_Mutation p.H1498Y 0.45 benign(0.04) TCGA-D3-A8GM-06 11 92616052 92616052 C T FAT3 Nonsense_Mutation p.Q4144* 0.41 TCGA-D3-A8GM-06 11 92881523 92881523 G A SLC36A4 3'UTR 0.45 TCGA-D3-A8GM-06 11 93127724 93127724 G A CCDC67 Missense_Mutation p.E381K 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 11 93545247 93545247 C T MED17 3'UTR 0.47 TCGA-D3-A8GM-06 11 93826703 93826703 G A HEPHL1 Nonsense_Mutation p.W777* 0.15 TCGA-D3-A8GM-06 11 94113936 94113936 C T GPR83 Silent p.E217E 0.18 TCGA-D3-A8GM-06 11 94189473 94189473 T - MRE11A Frame_Shift_Del p.N511Ifs*13 0.24 TCGA-D3-A8GM-06 11 94219207 94219207 T C MRE11A Missense_Mutation p.K66R 0.48 tolerated(0.15) probably_damaging(0.911) TCGA-D3-A8GM-06 11 94219235 94219235 A G MRE11A Silent p.L57L 0.21 TCGA-D3-A8GM-06 11 99827704 99827704 C T CNTN5 Silent p.V280V 0.15 TCGA-D3-A8GM-06 11 9989974 9989974 A G SBF2 Missense_Mutation p.I505T 0.22 deleterious(0) possibly_damaging(0.694) TCGA-D3-A8GM-06 12 101336240 101336240 C T ANO4 Missense_Mutation p.S93F 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-D3-A8GM-06 12 101365081 101365081 C T ANO4 Intron 0.26 TCGA-D3-A8GM-06 12 101480519 101480519 G A ANO4 Missense_Mutation p.A505T 0.21 tolerated(0.56) benign(0.138) TCGA-D3-A8GM-06 12 101491476 101491476 G T ANO4 Missense_Mutation p.R598I 0.23 deleterious(0) probably_damaging(0.937) TCGA-D3-A8GM-06 12 101504262 101504262 G A ANO4 Missense_Mutation p.E709K 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 12 101520695 101520695 G A ANO4 Silent p.L870L 0.14 TCGA-D3-A8GM-06 12 101723087 101723087 C T UTP20 Missense_Mutation p.R1093C 0.34 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 12 101880200 101880200 T C SPIC Missense_Mutation p.V133A 0.15 deleterious(0.01) possibly_damaging(0.52) TCGA-D3-A8GM-06 12 101880566 101880566 C T SPIC 3'UTR 0.22 TCGA-D3-A8GM-06 12 102053567 102053567 G A MYBPC1 Missense_Mutation p.E604K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GM-06 12 102071077 102071077 G A MYBPC1 Missense_Mutation p.G998E 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 10213762 10213762 A - CLEC9A Frame_Shift_Del p.K71Nfs*10 0.12 TCGA-D3-A8GM-06 12 102542346 102542346 T A PARPBP Intron 0.25 TCGA-D3-A8GM-06 12 102590450 102590450 G A PMCH Nonsense_Mutation p.R160* 0.26 TCGA-D3-A8GM-06 12 102813435 102813435 C T IGF1 Missense_Mutation p.R85K 0.38 tolerated(0.06) probably_damaging(0.981) TCGA-D3-A8GM-06 12 103271241 103271241 G A PAH Missense_Mutation p.P147L 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 10332123 10332123 G A TMEM52B 5'UTR 0.39 TCGA-D3-A8GM-06 12 103696019 103696019 C T C12orf42 Missense_Mutation p.G317D 0.19 deleterious(0.03) possibly_damaging(0.483) TCGA-D3-A8GM-06 12 104121068 104121068 C T STAB2 Silent p.V1625V 0.21 TCGA-D3-A8GM-06 12 10462061 10462061 G A KLRD1 Missense_Mutation p.G28R 0.35 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 12 104995700 104995700 C T CHST11 Silent p.P45P 0.24 TCGA-D3-A8GM-06 12 105151221 105151221 C T CHST11 Silent p.D233D 0.31 TCGA-D3-A8GM-06 12 105321891 105321891 C T SLC41A2 Missense_Mutation p.G139S 0.28 tolerated(0.65) benign(0.004) TCGA-D3-A8GM-06 12 10532376 10532376 A - KLRK1 Frame_Shift_Del p.F55Sfs*7 0.37 TCGA-D3-A8GM-06 12 105446632 105446632 G A ALDH1L2 Silent p.D455D 0.31 TCGA-D3-A8GM-06 12 105543469 105543469 C T KIAA1033 Missense_Mutation p.S864F 0.42 deleterious(0) possibly_damaging(0.849) TCGA-D3-A8GM-06 12 10601919 10601919 C T KLRC1 Missense_Mutation p.E136K 0.23 deleterious(0.03) possibly_damaging(0.692) TCGA-D3-A8GM-06 12 106461530 106461530 C T NUAK1 Missense_Mutation p.E346K 0.20 tolerated(0.2) benign(0.169) TCGA-D3-A8GM-06 12 106734697 106734697 A G TCP11L2 Silent p.L412L 0.21 TCGA-D3-A8GM-06 12 10786589 10786589 C T STYK1 Missense_Mutation p.G63S 0.36 tolerated(0.07) possibly_damaging(0.492) TCGA-D3-A8GM-06 12 10787285 10787285 C T STYK1 Intron 0.29 TCGA-D3-A8GM-06 12 108011213 108011213 G A BTBD11 Missense_Mutation p.R744K 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 12 108136118 108136118 C T PRDM4 Missense_Mutation p.E497K 0.22 tolerated(0.12) probably_damaging(0.951) TCGA-D3-A8GM-06 12 108634209 108634209 C T WSCD2 Silent p.F411F 0.33 TCGA-D3-A8GM-06 12 108641976 108641976 C T WSCD2 Silent p.F518F 0.40 TCGA-D3-A8GM-06 12 109536333 109536333 A T UNG Missense_Mutation p.N77Y 0.37 deleterious(0) possibly_damaging(0.808) TCGA-D3-A8GM-06 12 109947472 109947472 C T UBE3B Missense_Mutation p.S565F 0.35 tolerated(0.26) possibly_damaging(0.746) TCGA-D3-A8GM-06 12 111348965 111348965 G A MYL2 Silent p.F139F 0.25 TCGA-D3-A8GM-06 12 111744890 111744890 C T CUX2 Missense_Mutation p.L342F 0.48 deleterious(0.02) probably_damaging(0.98) TCGA-D3-A8GM-06 12 111748205 111748205 G A CUX2 Missense_Mutation p.G540E 0.43 tolerated(0.79) benign(0.004) TCGA-D3-A8GM-06 12 111772383 111772383 C A CUX2 Nonsense_Mutation p.S1022* 0.26 TCGA-D3-A8GM-06 12 112082121 112082121 C T BRAP Missense_Mutation p.R554Q 0.26 tolerated(0.27) benign(0.204) TCGA-D3-A8GM-06 12 112622027 112622027 G A HECTD4 Silent p.L3435L 0.28 TCGA-D3-A8GM-06 12 112888290 112888290 G A PTPN11 Silent p.L102L 0.19 TCGA-D3-A8GM-06 12 113285518 113285518 C T RPH3A Missense_Mutation p.S34F 0.32 deleterious(0) possibly_damaging(0.819) TCGA-D3-A8GM-06 12 113758256 113758256 G A SLC8B1 Silent p.L192L 0.38 TCGA-D3-A8GM-06 12 113824741 113824741 G A PLBD2 Splice_Site p.X429_splice 0.17 TCGA-D3-A8GM-06 12 115114255 115114255 G A TBX3 Missense_Mutation p.S321F 0.24 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 12 11546356 11546356 C T PRB2 Missense_Mutation p.G219E 0.14 tolerated(0.54) unknown(0) TCGA-D3-A8GM-06 12 11546369 11546369 G A PRB2 Missense_Mutation p.P215S 0.13 tolerated(0.57) unknown(0) TCGA-D3-A8GM-06 12 11546611 11546611 G A PRB2 Missense_Mutation p.P134L 0.23 deleterious(0.01) unknown(0) TCGA-D3-A8GM-06 12 117271605 117271605 C T RNFT2 Silent p.F297F 0.28 TCGA-D3-A8GM-06 12 117657930 117657930 G A NOS1 Nonsense_Mutation p.Q1408* 0.20 TCGA-D3-A8GM-06 12 117691451 117691451 G A NOS1 Silent p.A914A 0.37 TCGA-D3-A8GM-06 12 117696239 117696239 C T NOS1 Missense_Mutation p.E832K 0.43 tolerated(0.14) probably_damaging(0.928) TCGA-D3-A8GM-06 12 117768947 117768947 G A NOS1 5'Flank 0.19 TCGA-D3-A8GM-06 12 117909106 117909106 G A KSR2 Missense_Mutation p.H868Y 0.28 tolerated(0.06) possibly_damaging(0.815) TCGA-D3-A8GM-06 12 118590073 118590073 C T TAOK3 Missense_Mutation p.E832K 0.31 deleterious(0.04) benign(0.18) TCGA-D3-A8GM-06 12 118627747 118627747 C T TAOK3 Splice_Site p.X399_splice 0.20 TCGA-D3-A8GM-06 12 119617397 119617397 G A HSPB8 Missense_Mutation p.E94K 0.21 tolerated(0.08) benign(0.103) TCGA-D3-A8GM-06 12 119942892 119942892 C T CCDC60 Missense_Mutation p.P223S 0.25 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 12 120139662 120139662 C T CIT Silent p.T1802T 0.24 TCGA-D3-A8GM-06 12 121009011 121009011 C T RNF10 Silent p.L687L 0.30 TCGA-D3-A8GM-06 12 121094074 121094074 C T CABP1 Intron 0.29 TCGA-D3-A8GM-06 12 121779833 121779833 T - ANAPC5 Frame_Shift_Del p.K210Nfs*14 0.28 TCGA-D3-A8GM-06 12 122211386 122211386 C T TMEM120B Silent p.L247L 0.34 TCGA-D3-A8GM-06 12 122285085 122285085 G A HPD Missense_Mutation p.S211F 0.25 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 12 122361793 122361793 C T WDR66 Missense_Mutation p.S215F 0.24 deleterious(0) benign(0.01) TCGA-D3-A8GM-06 12 12251996 12251996 G T BCL2L14 3'UTR 0.43 TCGA-D3-A8GM-06 12 122825993 122825993 C A CLIP1 Missense_Mutation p.K586N 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GM-06 12 123346403 123346403 C T HIP1R 3'UTR 0.29 TCGA-D3-A8GM-06 12 123467115 123467115 C - ARL6IP4 Intron 0.27 TCGA-D3-A8GM-06 12 123479943 123479943 G A PITPNM2 Silent p.L683L 0.50 TCGA-D3-A8GM-06 12 123641440 123641440 G A MPHOSPH9 Missense_Mutation p.R1004C 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 12 124171495 124171495 G A TCTN2 Missense_Mutation p.R226H 0.37 tolerated(0.41) benign(0.004) TCGA-D3-A8GM-06 12 124228329 124228330 - AG ATP6V0A2 Intron p.S349Rfs*10 0.19 TCGA-D3-A8GM-06 12 124274519 124274519 G A DNAH10 Missense_Mutation p.V495M 0.20 possibly_damaging(0.902) TCGA-D3-A8GM-06 12 124333405 124333405 G A DNAH10 Silent p.L1908L 0.15 TCGA-D3-A8GM-06 12 124359880 124359880 C T DNAH10 Nonsense_Mutation p.R2563* 0.39 TCGA-D3-A8GM-06 12 124821309 124821309 G A NCOR2 Silent p.L2035L 0.34 TCGA-D3-A8GM-06 12 12483009 12483009 A G MANSC1 Silent p.R416R 0.25 TCGA-D3-A8GM-06 12 125834318 125834318 C A TMEM132B Missense_Mutation p.L125I 0.43 tolerated(0.31) benign(0.078) TCGA-D3-A8GM-06 12 126137026 126137026 A T TMEM132B Missense_Mutation p.T647S 0.17 deleterious(0.05) probably_damaging(0.974) TCGA-D3-A8GM-06 12 126138190 126138190 C T TMEM132B Missense_Mutation p.S724F 0.40 tolerated(0.11) probably_damaging(0.938) TCGA-D3-A8GM-06 12 12917582 12917582 C T APOLD1 Intron 0.26 TCGA-D3-A8GM-06 12 129558963 129558963 C T TMEM132D Silent p.G919G 0.23 TCGA-D3-A8GM-06 12 13061501 13061501 C T GPRC5A Silent p.S106S 0.32 TCGA-D3-A8GM-06 12 130647509 130647509 C A FZD10 Missense_Mutation p.L8M 0.25 deleterious_low_confidence(0.01) benign(0.221) TCGA-D3-A8GM-06 12 132212835 132212835 C A SFSWAP Intron 0.36 TCGA-D3-A8GM-06 12 132393226 132393226 C T ULK1 Silent p.F118F 0.62 TCGA-D3-A8GM-06 12 132393463 132393463 T C ULK1 Missense_Mutation p.Y171H 0.11 tolerated(0.22) probably_damaging(0.999) TCGA-D3-A8GM-06 12 132425868 132425868 C T PUS1 Silent p.S192S 0.11 TCGA-D3-A8GM-06 12 133202713 133202713 G A POLE Missense_Mutation p.S2174F 0.23 tolerated(0.7) benign(0.001) TCGA-D3-A8GM-06 12 13716066 13716066 C T GRIN2B Missense_Mutation p.G1369D 0.20 tolerated(0.07) benign(0.207) TCGA-D3-A8GM-06 12 13906414 13906414 C T GRIN2B Missense_Mutation p.D283N 0.36 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 12 14767839 14767839 C T GUCY2C Missense_Mutation p.M1003I 0.36 tolerated(0.49) benign(0.001) TCGA-D3-A8GM-06 12 14813923 14813923 C T GUCY2C Silent p.L452L 0.36 TCGA-D3-A8GM-06 12 14993811 14993811 C T ART4 Missense_Mutation p.A141T 0.33 tolerated(0.17) benign(0.098) TCGA-D3-A8GM-06 12 15704551 15704551 G A PTPRO Missense_Mutation p.G835E 0.19 deleterious(0) possibly_damaging(0.811) TCGA-D3-A8GM-06 12 16047015 16047015 A - STRAP Frame_Shift_Del p.A149Lfs*26 0.31 TCGA-D3-A8GM-06 12 18524125 18524125 C T PIK3C2G Missense_Mutation p.P546L 0.27 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GM-06 12 18641449 18641449 C T PIK3C2G Silent p.L816L 0.16 TCGA-D3-A8GM-06 12 18641541 18641541 C T PIK3C2G Missense_Mutation p.S847F 0.17 deleterious(0.01) possibly_damaging(0.482) TCGA-D3-A8GM-06 12 18691093 18691093 C T PIK3C2G Silent p.D1068D 0.42 TCGA-D3-A8GM-06 12 18854485 18854485 C T PLCZ1 Missense_Mutation p.E323K 0.60 tolerated(0.12) benign(0.009) TCGA-D3-A8GM-06 12 18854659 18854659 C T PLCZ1 Missense_Mutation p.E306K 0.16 tolerated(0.09) benign(0.115) TCGA-D3-A8GM-06 12 18891478 18891478 C T CAPZA3 Silent p.F92F 0.41 TCGA-D3-A8GM-06 12 1940424 1940424 C A LRTM2 Missense_Mutation p.L131M 0.15 tolerated(0.2) possibly_damaging(0.869) TCGA-D3-A8GM-06 12 21030809 21030809 C T SLCO1B3 Silent p.Y358Y 0.31 TCGA-D3-A8GM-06 12 21205170 21205170 C T SLCO1B7 Missense_Mutation p.S444F 0.27 deleterious(0.04) benign(0.067) TCGA-D3-A8GM-06 12 21205189 21205189 G A SLCO1B7 Silent p.E450E 0.24 TCGA-D3-A8GM-06 12 21690011 21690011 C T GYS2 Silent p.V663V 0.32 TCGA-D3-A8GM-06 12 21712067 21712074 TCGATCTA - GYS2 Frame_Shift_Del p.L420* 0.23 TCGA-D3-A8GM-06 12 21926263 21926263 A T KCNJ8 Missense_Mutation p.F96L 0.44 tolerated(0.37) probably_damaging(0.973) TCGA-D3-A8GM-06 12 21998539 21998539 G A ABCC9 Nonsense_Mutation p.Q1032* 0.33 TCGA-D3-A8GM-06 12 24985762 24985762 C T BCAT1 Missense_Mutation p.M325I 0.25 deleterious(0.05) probably_damaging(0.937) TCGA-D3-A8GM-06 12 2613673 2613673 C T CACNA1C Intron 0.33 TCGA-D3-A8GM-06 12 2614018 2614018 C T CACNA1C Missense_Mutation p.A375V 0.47 deleterious(0.01) probably_damaging(0.952) TCGA-D3-A8GM-06 12 27077296 27077296 G A ASUN Missense_Mutation p.P266S 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 12 274927 274927 C T IQSEC3 Missense_Mutation p.L948F 0.27 tolerated(0.71) probably_damaging(0.969) TCGA-D3-A8GM-06 12 27803049 27803049 A G PPFIBP1 Missense_Mutation p.Y193C 0.35 tolerated(0.19) probably_damaging(0.998) TCGA-D3-A8GM-06 12 28603303 28603303 G A CCDC91 Silent p.L292L 0.38 TCGA-D3-A8GM-06 12 30843452 30843452 C T IPO8 Silent p.V48V 0.27 TCGA-D3-A8GM-06 12 31237932 31237932 C T DDX11 Silent p.L170L 0.29 TCGA-D3-A8GM-06 12 31819079 31819079 G T METTL20 Nonsense_Mutation p.G125* 0.24 TCGA-D3-A8GM-06 12 33031405 33031405 C T PKP2 Missense_Mutation p.E137K 0.21 tolerated(0.22) probably_damaging(0.933) TCGA-D3-A8GM-06 12 351835 351835 G A SLC6A13 Silent p.F141F 0.19 TCGA-D3-A8GM-06 12 40749932 40749932 T G LRRK2 Missense_Mutation p.F2262L 0.23 tolerated(0.36) possibly_damaging(0.577) TCGA-D3-A8GM-06 12 41302192 41302192 A T CNTN1 5'UTR 0.40 TCGA-D3-A8GM-06 12 43769241 43769241 G A ADAMTS20 Missense_Mutation p.A1796V 0.43 deleterious(0.01) probably_damaging(0.911) TCGA-D3-A8GM-06 12 43771246 43771246 C T ADAMTS20 Silent p.V1639V 0.24 TCGA-D3-A8GM-06 12 43777456 43777456 C T ADAMTS20 Missense_Mutation p.E1568K 0.25 tolerated(0.13) possibly_damaging(0.562) TCGA-D3-A8GM-06 12 43945647 43945647 G A ADAMTS20 Silent p.F26F 0.23 TCGA-D3-A8GM-06 12 44338122 44338122 T A TMEM117 Silent p.I129I 0.37 TCGA-D3-A8GM-06 12 44338123 44338123 C T TMEM117 Missense_Mutation p.L130F 0.37 tolerated(0.06) benign(0.006) TCGA-D3-A8GM-06 12 4461555 4461555 C T C12orf5 Missense_Mutation p.P171S 0.24 tolerated(0.09) benign(0.056) TCGA-D3-A8GM-06 12 44782223 44782223 C T TMEM117 Missense_Mutation p.S438F 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D3-A8GM-06 12 46245671 46245671 T C ARID2 Silent p.G1255G 0.33 TCGA-D3-A8GM-06 12 46321474 46321475 - T SCAF11 Frame_Shift_Ins p.N670Kfs*2 0.15 TCGA-D3-A8GM-06 12 46322363 46322363 C T SCAF11 Missense_Mutation p.R374Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 12 4665661 4665661 C T RAD51AP1 Silent p.V305V 0.27 TCGA-D3-A8GM-06 12 4665662 4665662 C T RAD51AP1 Missense_Mutation p.P306S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 47471749 47471749 C T AMIGO2 Missense_Mutation p.G346E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 47630126 47630126 C T PCED1B Missense_Mutation p.P427L 0.30 tolerated(0.25) benign(0.003) TCGA-D3-A8GM-06 12 48063957 48063957 G A RPAP3 Missense_Mutation p.P487S 0.07 tolerated(0.14) probably_damaging(0.968) TCGA-D3-A8GM-06 12 48096599 48096599 C T RPAP3 Missense_Mutation p.E9K 0.36 deleterious(0) possibly_damaging(0.905) TCGA-D3-A8GM-06 12 48104434 48104434 C T ENDOU 3'UTR 0.30 TCGA-D3-A8GM-06 12 48105518 48105518 C T ENDOU Nonsense_Mutation p.W338* 0.24 TCGA-D3-A8GM-06 12 48188584 48188584 G T HDAC7 Missense_Mutation p.P473T 0.11 tolerated(0.39) benign(0.171) TCGA-D3-A8GM-06 12 4835827 4835827 C T GALNT8 Missense_Mutation p.T114I 0.23 tolerated(0.16) benign(0.021) TCGA-D3-A8GM-06 12 48389076 48389076 G - COL2A1 Frame_Shift_Del p.R242Vfs*66 0.14 TCGA-D3-A8GM-06 12 48525164 48525164 G A PFKM Missense_Mutation p.M146I 0.40 tolerated(0.07) benign(0.412) TCGA-D3-A8GM-06 12 49167864 49167864 G A ADCY6 Silent p.T767T 0.21 TCGA-D3-A8GM-06 12 49360064 49360064 C T WNT10B Silent p.G328G 0.24 TCGA-D3-A8GM-06 12 49399602 49399602 G A PRKAG1 Missense_Mutation p.S31F 0.23 deleterious(0.05) benign(0.215) TCGA-D3-A8GM-06 12 49420815 49420815 G A KMT2D Silent p.R4978R 0.16 TCGA-D3-A8GM-06 12 49666057 49666057 C T TUBA1C Nonsense_Mutation p.Q133* 0.42 TCGA-D3-A8GM-06 12 5021377 5021377 G A KCNA1 Missense_Mutation p.G278E 0.56 tolerated(0.17) benign(0.006) TCGA-D3-A8GM-06 12 50236846 50236846 C T BCDIN3D Missense_Mutation p.G9R 0.16 tolerated(0.23) benign(0.041) TCGA-D3-A8GM-06 12 50355992 50355992 C T AQP5 Silent p.S64S 0.16 TCGA-D3-A8GM-06 12 50473713 50473713 C T ASIC1 Silent p.Y360Y 0.43 TCGA-D3-A8GM-06 12 51065176 51065176 G A DIP2B Missense_Mutation p.R212Q 0.35 tolerated(0.38) benign(0.002) TCGA-D3-A8GM-06 12 51100392 51100392 T C DIP2B Silent p.D826D 0.38 TCGA-D3-A8GM-06 12 5153793 5153793 G A KCNA5 Silent p.R160R 0.10 TCGA-D3-A8GM-06 12 51759256 51759256 T G GALNT6 Missense_Mutation p.S258R 0.27 deleterious(0.04) possibly_damaging(0.762) TCGA-D3-A8GM-06 12 51883671 51883671 G A SLC4A8 Missense_Mutation p.R879K 0.23 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 12 52200902 52200902 C T SCN8A Missense_Mutation p.P1878S 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 12 52385781 52385781 A G ACVR1B Intron 0.40 TCGA-D3-A8GM-06 12 52788855 52788855 G A KRT82 Silent p.V482V 0.20 TCGA-D3-A8GM-06 12 52881472 52881472 G A KRT6A 3'UTR 0.27 TCGA-D3-A8GM-06 12 52886543 52886543 G A KRT6A Missense_Mutation p.L144F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 12 52938151 52938151 G A KRT71 3'UTR 0.18 TCGA-D3-A8GM-06 12 52960672 52960672 G A KRT74 3'UTR 0.21 TCGA-D3-A8GM-06 12 53070916 53070916 G A KRT1 Missense_Mutation p.S394L 0.23 deleterious(0.01) benign(0.206) TCGA-D3-A8GM-06 12 53162380 53162380 G A KRT76 3'UTR 0.13 TCGA-D3-A8GM-06 12 53162453 53162453 G A KRT76 3'UTR 0.35 TCGA-D3-A8GM-06 12 53346085 53346085 C T KRT18 Silent p.I377I 0.18 TCGA-D3-A8GM-06 12 53421634 53421634 C T EIF4B Missense_Mutation p.R246C 0.20 deleterious(0.02) possibly_damaging(0.689) TCGA-D3-A8GM-06 12 53516997 53516997 G A SOAT2 Missense_Mutation p.G457R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 53663081 53663081 C G ESPL1 Missense_Mutation p.R119G 0.15 deleterious(0.02) benign(0.246) TCGA-D3-A8GM-06 12 53825305 53825305 G A AMHR2 3'UTR 0.26 TCGA-D3-A8GM-06 12 53876468 53876468 C A MAP3K12 Missense_Mutation p.G707C 0.23 deleterious_low_confidence(0.03) benign(0.053) TCGA-D3-A8GM-06 12 54792413 54792413 G A ITGA5 Silent p.L971L 0.34 TCGA-D3-A8GM-06 12 54794765 54794765 G A ITGA5 Silent p.G836G 0.38 TCGA-D3-A8GM-06 12 54802012 54802012 G A ITGA5 Silent p.I233I 0.29 TCGA-D3-A8GM-06 12 54913116 54913116 G A NCKAP1L Missense_Mutation p.C542Y 0.12 deleterious(0) possibly_damaging(0.501) TCGA-D3-A8GM-06 12 54913117 54913117 G A NCKAP1L Splice_Site p.X542_splice 0.12 TCGA-D3-A8GM-06 12 54917236 54917236 A G NCKAP1L Missense_Mutation p.K646R 0.36 deleterious(0.02) possibly_damaging(0.551) TCGA-D3-A8GM-06 12 55038474 55038474 C T DCD 3'UTR 0.28 TCGA-D3-A8GM-06 12 55421145 55421145 C T NEUROD4 Missense_Mutation p.P308S 0.24 deleterious(0.02) possibly_damaging(0.543) TCGA-D3-A8GM-06 12 55615277 55615277 A G OR10A7 Missense_Mutation p.M157V 0.27 tolerated(1) benign(0.058) TCGA-D3-A8GM-06 12 55641986 55641986 G A OR6C74 Silent p.K305K 0.47 TCGA-D3-A8GM-06 12 55846762 55846762 C T OR6C2 Silent p.F255F 0.37 TCGA-D3-A8GM-06 12 55863664 55863664 C T OR6C70 Missense_Mutation p.E87K 0.37 deleterious_low_confidence(0.03) benign(0.003) TCGA-D3-A8GM-06 12 56031264 56031264 G A OR10P1 Missense_Mutation p.E197K 0.36 deleterious(0.03) possibly_damaging(0.899) TCGA-D3-A8GM-06 12 56075755 56075755 G A METTL7B Missense_Mutation p.A73T 0.24 tolerated(0.81) benign(0.002) TCGA-D3-A8GM-06 12 56091269 56091269 C T ITGA7 Missense_Mutation p.E495K 0.28 tolerated(0.37) possibly_damaging(0.566) TCGA-D3-A8GM-06 12 56561937 56561937 C A SMARCC2 Silent p.V888V 0.17 TCGA-D3-A8GM-06 12 56873583 56873583 C T GLS2 Missense_Mutation p.D129N 0.23 tolerated(0.23) benign(0.004) TCGA-D3-A8GM-06 12 57111844 57111844 G A NACA Intron 0.41 TCGA-D3-A8GM-06 12 57112550 57112550 G A NACA Intron 0.38 TCGA-D3-A8GM-06 12 57324215 57324215 C T SDR9C7 Missense_Mutation p.E119K 0.23 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GM-06 12 57486926 57486928 GGA - NAB2 In_Frame_Del p.E410del 0.36 TCGA-D3-A8GM-06 12 57569343 57569343 C T LRP1 Silent p.P1216P 0.32 TCGA-D3-A8GM-06 12 57591415 57591415 C T LRP1 Nonsense_Mutation p.R3084* 0.21 TCGA-D3-A8GM-06 12 57597268 57597268 A G LRP1 Missense_Mutation p.M3639V 0.44 benign(0.046) TCGA-D3-A8GM-06 12 57603618 57603618 G A LRP1 Missense_Mutation p.V4136M 0.41 possibly_damaging(0.685) TCGA-D3-A8GM-06 12 57860059 57860059 G A GLI1 Missense_Mutation p.E267K 0.19 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GM-06 12 57866269 57866269 G A ARHGAP9 3'UTR 0.44 TCGA-D3-A8GM-06 12 58008350 58008350 G T ARHGEF25 Nonsense_Mutation p.E299* 0.28 TCGA-D3-A8GM-06 12 58088616 58088616 C T OS9 Silent p.F82F 0.39 TCGA-D3-A8GM-06 12 58088617 58088617 C T OS9 Nonsense_Mutation p.Q83* 0.38 TCGA-D3-A8GM-06 12 6030316 6030316 C T ANO2 Missense_Mutation p.D138N 0.24 tolerated(0.18) benign(0.156) TCGA-D3-A8GM-06 12 6101113 6101113 C T VWF Missense_Mutation p.V2224M 0.40 tolerated(0.12) benign(0.176) TCGA-D3-A8GM-06 12 62104166 62104166 G A FAM19A2 3'UTR 0.15 TCGA-D3-A8GM-06 12 6421406 6421406 G A PLEKHG6 Missense_Mutation p.G5D 0.33 tolerated_low_confidence(0.21) benign(0.002) TCGA-D3-A8GM-06 12 6439072 6439072 G A TNFRSF1A Missense_Mutation p.P310L 0.50 deleterious(0.05) benign(0.009) TCGA-D3-A8GM-06 12 64521493 64521493 C T SRGAP1 Silent p.G843G 0.31 TCGA-D3-A8GM-06 12 64746701 64746701 G A C12orf56 Missense_Mutation p.H130Y 0.21 tolerated(0.3) possibly_damaging(0.801) TCGA-D3-A8GM-06 12 65136930 65136930 G A GNS Silent p.I261I 0.35 TCGA-D3-A8GM-06 12 66152525 66152525 C T RPSAP52 RNA 0.46 TCGA-D3-A8GM-06 12 6669702 6669702 G A NOP2 Nonsense_Mutation p.Q524* 0.32 TCGA-D3-A8GM-06 12 6669703 6669703 G A NOP2 Silent p.L523L 0.30 TCGA-D3-A8GM-06 12 66703951 66703951 C T HELB Missense_Mutation p.P415S 0.42 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 12 68619258 68619258 C T IL26 Missense_Mutation p.R65Q 0.30 tolerated(0.32) benign(0.056) TCGA-D3-A8GM-06 12 6928465 6928465 C T CD4 Silent p.H449H 0.17 TCGA-D3-A8GM-06 12 6955046 6955046 C T CDCA3 3'Flank 0.12 TCGA-D3-A8GM-06 12 69656295 69656318 CGTGACCGAGAGCGTGACCGAGAG - CPSF6 In_Frame_Del p.D539_R546del 0.34 TCGA-D3-A8GM-06 12 70048773 70048773 C T BEST3 Missense_Mutation p.D641N 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.632) TCGA-D3-A8GM-06 12 7092677 7092677 G A LPCAT3 Missense_Mutation p.R59W 0.06 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 70933620 70933620 G A PTPRB Missense_Mutation p.R1895W 0.20 deleterious(0) possibly_damaging(0.823) TCGA-D3-A8GM-06 12 70949925 70949925 G T PTPRB Missense_Mutation p.P1573H 0.15 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 12 70986244 70986244 C T PTPRB Missense_Mutation p.G533E 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 12 70988334 70988334 C T PTPRB Missense_Mutation p.G477R 0.36 tolerated(0.05) benign(0.063) TCGA-D3-A8GM-06 12 71016378 71016378 G A PTPRB Missense_Mutation p.P167L 0.44 tolerated_low_confidence(0.14) benign(0.004) TCGA-D3-A8GM-06 12 71029521 71029521 G A PTPRB Silent p.L127L 0.35 TCGA-D3-A8GM-06 12 71029722 71029722 G A PTPRB Silent p.L60L 0.24 TCGA-D3-A8GM-06 12 71139714 71139714 C A PTPRR Missense_Mutation p.K297N 0.27 tolerated(0.08) benign(0.183) TCGA-D3-A8GM-06 12 7188187 7188187 C T C1R Silent p.L537L 0.38 TCGA-D3-A8GM-06 12 72289743 72289743 G A TBC1D15 Missense_Mutation p.R308H 0.17 deleterious(0) possibly_damaging(0.87) TCGA-D3-A8GM-06 12 7290646 7290646 C T CLSTN3 Missense_Mutation p.L436F 0.27 tolerated(0.5) possibly_damaging(0.837) TCGA-D3-A8GM-06 12 7522042 7522042 C T CD163L1 Missense_Mutation p.G1317E 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 7527989 7527989 C T CD163L1 Nonsense_Mutation p.W963* 0.14 TCGA-D3-A8GM-06 12 7531810 7531810 C T CD163L1 Missense_Mutation p.G712E 0.21 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GM-06 12 75444621 75444621 G A KCNC2 Silent p.F388F 0.29 TCGA-D3-A8GM-06 12 78400451 78400451 C T NAV3 Missense_Mutation p.P378L 0.40 tolerated(0.06) benign(0.108) TCGA-D3-A8GM-06 12 78415583 78415583 C T NAV3 Missense_Mutation p.P655L 0.41 tolerated(0.15) benign(0.088) TCGA-D3-A8GM-06 12 7848152 7848152 C T GDF3 Missense_Mutation p.R58H 0.27 deleterious(0.02) benign(0.063) TCGA-D3-A8GM-06 12 78522593 78522593 C T NAV3 Missense_Mutation p.S1463F 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 12 7864242 7864242 G A DPPA3 Missense_Mutation p.D26N 0.32 tolerated(0.7) possibly_damaging(0.792) TCGA-D3-A8GM-06 12 7867857 7867857 C T DPPA3 Missense_Mutation p.S54F 0.29 deleterious(0.02) possibly_damaging(0.654) TCGA-D3-A8GM-06 12 79685851 79685851 G A SYT1 Missense_Mutation p.E139K 0.27 tolerated(0.11) benign(0.058) TCGA-D3-A8GM-06 12 79689980 79689980 C T SYT1 Silent p.T202T 0.14 TCGA-D3-A8GM-06 12 79842872 79842872 G A SYT1 Missense_Mutation p.E413K 0.24 deleterious(0.02) probably_damaging(0.917) TCGA-D3-A8GM-06 12 8051550 8051550 C T NANOGP1 RNA 0.19 TCGA-D3-A8GM-06 12 80704445 80704445 C T OTOGL Missense_Mutation p.P1121S 0.16 deleterious(0.03) possibly_damaging(0.898) TCGA-D3-A8GM-06 12 80735796 80735796 G A OTOGL Missense_Mutation p.D1698N 0.48 tolerated(0.1) benign(0.026) TCGA-D3-A8GM-06 12 81741469 81741469 C T PPFIA2 Missense_Mutation p.G692D 0.21 tolerated(0.06) benign(0.063) TCGA-D3-A8GM-06 12 81839409 81839409 C T PPFIA2 Missense_Mutation p.G166R 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 8374792 8374792 C T FAM90A1 Missense_Mutation p.G341R 0.22 tolerated(0.37) possibly_damaging(0.593) TCGA-D3-A8GM-06 12 85266513 85266513 G A SLC6A15 Silent p.P390P 0.39 TCGA-D3-A8GM-06 12 86373566 86373566 C T MGAT4C Missense_Mutation p.G313D 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 8687260 8687260 G A CLEC4E Missense_Mutation p.P212S 0.35 tolerated_low_confidence(0.38) benign(0.01) TCGA-D3-A8GM-06 12 8691818 8691818 C T CLEC4E Missense_Mutation p.G72E 0.28 tolerated(0.42) benign(0.08) TCGA-D3-A8GM-06 12 8993974 8993974 A G A2ML1 Missense_Mutation p.R364G 0.28 tolerated(0.48) benign(0.004) TCGA-D3-A8GM-06 12 9008115 9008115 A C A2ML1 Silent p.A925A 0.23 TCGA-D3-A8GM-06 12 91347364 91347364 G A CCER1 Missense_Mutation p.P386S 0.16 tolerated(0.14) unknown(0) TCGA-D3-A8GM-06 12 91449274 91449274 G A KERA Missense_Mutation p.S262L 0.31 deleterious(0) possibly_damaging(0.694) TCGA-D3-A8GM-06 12 9262548 9262548 T C A2M Silent p.S196S 0.30 TCGA-D3-A8GM-06 12 9317940 9317940 C T PZP Missense_Mutation p.G761E 0.19 tolerated(1) benign(0.03) TCGA-D3-A8GM-06 12 94642056 94642056 C T PLXNC1 Silent p.F882F 0.33 TCGA-D3-A8GM-06 12 96361598 96361598 G A AMDHD1 Missense_Mutation p.G420R 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 12 97045378 97045378 C T C12orf55 Missense_Mutation p.R1629C 0.17 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 12 97045404 97045404 G A C12orf55 Silent p.Q1637Q 0.18 TCGA-D3-A8GM-06 12 97136236 97136236 A G C12orf55 Missense_Mutation p.D2364G 0.08 tolerated(0.18) benign(0.015) TCGA-D3-A8GM-06 12 97334225 97334225 G A NEDD1 Missense_Mutation p.E393K 0.37 deleterious(0.02) benign(0.423) TCGA-D3-A8GM-06 12 9747970 9747970 G A KLRB1 Missense_Mutation p.S193L 0.45 deleterious(0.02) possibly_damaging(0.903) TCGA-D3-A8GM-06 12 98941496 98941496 C T TMPO Missense_Mutation p.R300C 0.32 deleterious(0) benign(0.105) TCGA-D3-A8GM-06 12 99028148 99028148 G A IKBIP Nonsense_Mutation p.Q75* 0.19 TCGA-D3-A8GM-06 12 99129373 99129373 C T ANKS1B Missense_Mutation p.E1238K 0.30 tolerated_low_confidence(0.07) benign(0.015) TCGA-D3-A8GM-06 12 99898353 99898353 G A ANKS1B Missense_Mutation p.P447S 0.26 tolerated(0.78) benign(0.052) TCGA-D3-A8GM-06 13 100181814 100181814 A - TM9SF2 Frame_Shift_Del p.S145Afs*4 0.27 TCGA-D3-A8GM-06 13 101290208 101290208 T C TMTC4 Silent p.V270V 0.10 TCGA-D3-A8GM-06 13 101910827 101910827 G A NALCN Silent p.F411F 0.58 TCGA-D3-A8GM-06 13 102220170 102220170 C T ITGBL1 Missense_Mutation p.S146L 0.58 tolerated(0.07) benign(0.206) TCGA-D3-A8GM-06 13 103492296 103492296 T C BIVM 3'UTR 0.21 TCGA-D3-A8GM-06 13 108861372 108861372 A G LIG4 Missense_Mutation p.S749P 0.15 tolerated(0.12) benign(0.018) TCGA-D3-A8GM-06 13 109704722 109704722 C T MYO16 Missense_Mutation p.P961S 0.63 tolerated(0.1) benign(0.219) TCGA-D3-A8GM-06 13 111114464 111114464 G T COL4A2 Missense_Mutation p.V534L 0.09 benign(0.127) TCGA-D3-A8GM-06 13 111368093 111368093 C T ING1 Silent p.G101G 0.64 TCGA-D3-A8GM-06 13 111953111 111953111 T A ARHGEF7 Silent p.S560S 0.36 TCGA-D3-A8GM-06 13 113633999 113633999 A G MCF2L Intron 0.19 TCGA-D3-A8GM-06 13 114507915 114507915 C T TMEM255B Missense_Mutation p.P243S 0.49 tolerated(0.12) possibly_damaging(0.89) TCGA-D3-A8GM-06 13 20221272 20221272 C T MPHOSPH8 Silent p.F353F 0.61 TCGA-D3-A8GM-06 13 20796757 20796757 G A GJB6 3'UTR 0.33 TCGA-D3-A8GM-06 13 23777974 23777974 C T SGCG Silent p.L47L 0.25 TCGA-D3-A8GM-06 13 23903641 23903642 - A SACS 3'UTR 0.27 TCGA-D3-A8GM-06 13 23910738 23910738 C T SACS Missense_Mutation p.R2426Q 0.51 probably_damaging(0.992) TCGA-D3-A8GM-06 13 23915177 23915177 A G SACS Silent p.G946G 0.35 TCGA-D3-A8GM-06 13 24465325 24465325 T A C1QTNF9B 3'Flank 0.68 TCGA-D3-A8GM-06 13 24515817 24515817 C T ANKRD20A19P RNA 0.70 TCGA-D3-A8GM-06 13 25338307 25338307 G A RNF17 5'UTR 0.32 TCGA-D3-A8GM-06 13 25671611 25671611 A G PABPC3 Silent p.L425L 0.33 TCGA-D3-A8GM-06 13 26621017 26621017 C T SHISA2 Silent p.R174R 0.62 TCGA-D3-A8GM-06 13 26788819 26788819 G A RNF6 Silent p.D400D 0.65 TCGA-D3-A8GM-06 13 28893564 28893564 G A FLT1 Silent p.S1094S 0.63 TCGA-D3-A8GM-06 13 29008034 29008034 G A FLT1 Silent p.G245G 0.34 TCGA-D3-A8GM-06 13 33700343 33700343 G A STARD13 Missense_Mutation p.P653S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 13 34540306 34540306 C T RFC3 3'UTR 0.63 TCGA-D3-A8GM-06 13 36700164 36700164 G T DCLK1 Silent p.A37A 0.15 TCGA-D3-A8GM-06 13 37269547 37269547 G A SERTM1 3'UTR 0.57 TCGA-D3-A8GM-06 13 38211735 38211735 G A TRPC4 Missense_Mutation p.R752C 0.34 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GM-06 13 39448642 39448642 C T FREM2 Missense_Mutation p.R2734C 0.15 deleterious(0) possibly_damaging(0.609) TCGA-D3-A8GM-06 13 39544345 39544345 C T STOML3 Missense_Mutation p.E165K 0.73 tolerated(0.2) probably_damaging(0.998) TCGA-D3-A8GM-06 13 41826834 41826834 G A MTRF1 Missense_Mutation p.S215L 0.28 deleterious(0) possibly_damaging(0.61) TCGA-D3-A8GM-06 13 42875618 42875618 G - AKAP11 Frame_Shift_Del p.E913Rfs*39 0.21 TCGA-D3-A8GM-06 13 46718602 46718602 T C LCP1 Missense_Mutation p.N410D 0.35 tolerated(0.35) benign(0.007) TCGA-D3-A8GM-06 13 48660545 48660545 A C MED4 Missense_Mutation p.L79R 0.28 deleterious(0.02) probably_damaging(0.939) TCGA-D3-A8GM-06 13 48986682 48986682 T - LPAR6 5'UTR 0.40 TCGA-D3-A8GM-06 13 49039224 49039225 - T RB1 Frame_Shift_Ins p.L769Ffs*26 0.42 TCGA-D3-A8GM-06 13 49765502 49765502 T C FNDC3A Silent p.R736R 0.65 TCGA-D3-A8GM-06 13 52602863 52602865 AGG - UTP14C 5'UTR 0.40 TCGA-D3-A8GM-06 13 58207121 58207121 G A PCDH17 Silent p.P147P 0.42 TCGA-D3-A8GM-06 13 58207122 58207122 G A PCDH17 Missense_Mutation p.G148S 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 13 72256018 72256018 C T DACH1 Silent p.K293K 0.61 TCGA-D3-A8GM-06 13 73636205 73636205 G A KLF5 Silent p.P156P 0.60 TCGA-D3-A8GM-06 13 76381720 76381720 G A LMO7 Missense_Mutation p.R201H 0.20 tolerated(0.15) benign(0.014) TCGA-D3-A8GM-06 13 86368957 86368957 C T SLITRK6 Missense_Mutation p.E563K 0.60 deleterious(0.01) benign(0.301) TCGA-D3-A8GM-06 13 95818559 95818559 G A ABCC4 Silent p.S629S 0.63 TCGA-D3-A8GM-06 13 96553135 96553135 G A UGGT2 Nonsense_Mutation p.R854* 0.38 TCGA-D3-A8GM-06 13 96579351 96579351 A T UGGT2 Missense_Mutation p.F711I 0.35 deleterious(0) possibly_damaging(0.697) TCGA-D3-A8GM-06 13 97600315 97600315 C T RP11-65L19.4 5'Flank 0.75 TCGA-D3-A8GM-06 13 97639462 97639462 G A OXGR1 Silent p.L184L 0.69 TCGA-D3-A8GM-06 13 97639464 97639464 G A OXGR1 Missense_Mutation p.L184F 0.69 tolerated(0.06) probably_damaging(0.962) TCGA-D3-A8GM-06 13 98670864 98670864 A G IPO5 Silent p.V932V 0.16 TCGA-D3-A8GM-06 13 99354748 99354748 C T SLC15A1 Silent p.G484G 0.48 TCGA-D3-A8GM-06 13 99457405 99457405 G A DOCK9 Missense_Mutation p.P1872L 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 13 99907420 99907420 G A GPR18 Missense_Mutation p.T236M 0.61 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 14 100118982 100118982 C T HHIPL1 Missense_Mutation p.S226L 0.47 deleterious(0) possibly_damaging(0.708) TCGA-D3-A8GM-06 14 102028316 102028316 G A DIO3 Silent p.L161L 0.38 TCGA-D3-A8GM-06 14 102474625 102474625 G T DYNC1H1 Missense_Mutation p.Q1976H 0.07 probably_damaging(0.999) TCGA-D3-A8GM-06 14 102478439 102478439 C T DYNC1H1 Silent p.H2282H 0.12 TCGA-D3-A8GM-06 14 102549295 102549295 G A HSP90AA1 Intron 0.27 TCGA-D3-A8GM-06 14 102549504 102549504 A G HSP90AA1 Missense_Mutation p.L663S 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GM-06 14 102802052 102802052 T - ZNF839 Frame_Shift_Del p.F514Sfs*36 0.16 TCGA-D3-A8GM-06 14 103410735 103410735 G T CDC42BPB Missense_Mutation p.H1301N 0.13 deleterious(0) possibly_damaging(0.559) TCGA-D3-A8GM-06 14 103416176 103416176 C T CDC42BPB Silent p.K1125K 0.33 TCGA-D3-A8GM-06 14 104129222 104129222 C T KLC1 Missense_Mutation p.P252L 0.18 deleterious(0.04) benign(0.233) TCGA-D3-A8GM-06 14 104571010 104571010 G A ASPG Missense_Mutation p.A330T 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 14 105239274 105239274 C T AKT1 Silent p.T371T 0.43 TCGA-D3-A8GM-06 14 105410571 105410571 G A AHNAK2 Silent p.P3739P 0.50 TCGA-D3-A8GM-06 14 105419434 105419434 G A AHNAK2 Missense_Mutation p.A785V 0.39 benign(0.115) TCGA-D3-A8GM-06 14 105518280 105518280 C T GPR132 Nonsense_Mutation p.W65* 0.27 TCGA-D3-A8GM-06 14 105739070 105739070 C T BRF1 Missense_Mutation p.E143K 0.48 deleterious(0) possibly_damaging(0.859) TCGA-D3-A8GM-06 14 105834848 105834848 C T PACS2 Missense_Mutation p.S238L 0.44 tolerated(0.2) benign(0.284) TCGA-D3-A8GM-06 14 106066535 106066535 G A IGHE Silent p.F385F 0.23 TCGA-D3-A8GM-06 14 106110225 106110225 C T IGHG2 Missense_Mutation p.M131I 0.25 tolerated(0.11) benign(0.161) TCGA-D3-A8GM-06 14 106174288 106174288 C T IGHA1 Silent p.G167G 0.41 TCGA-D3-A8GM-06 14 106208495 106208495 C T IGHG1 Missense_Mutation p.M135I 0.39 tolerated(0.15) benign(0.046) TCGA-D3-A8GM-06 14 106320644 106320644 G A IGHM Missense_Mutation p.P389L 0.52 deleterious(0) possibly_damaging(0.886) TCGA-D3-A8GM-06 14 106321812 106321812 G A IGHM Missense_Mutation p.P141L 0.49 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GM-06 14 106322017 106322017 G A IGHM Missense_Mutation p.L103F 0.39 tolerated(0.75) benign(0.018) TCGA-D3-A8GM-06 14 106363844 106363844 C T IGHD2-15 Translation_Start_Site p.R1? 0.18 unknown(0) TCGA-D3-A8GM-06 14 106641661 106641661 C T IGHV1-18 Missense_Mutation p.G85S 0.30 deleterious(0.04) benign(0.361) TCGA-D3-A8GM-06 14 106725402 106725402 G A IGHV3-23 Silent p.S50S 0.35 TCGA-D3-A8GM-06 14 106725445 106725445 G A IGHV3-23 Missense_Mutation p.S36F 0.16 deleterious_low_confidence(0.01) benign(0.409) TCGA-D3-A8GM-06 14 106963340 106963340 G A IGHV1-45 Silent p.F9F 0.30 TCGA-D3-A8GM-06 14 106967524 106967524 G A IGHV1-46 5'UTR 0.23 TCGA-D3-A8GM-06 14 107048701 107048701 C T IGHV3-53 Missense_Mutation p.E107K 0.41 deleterious_low_confidence(0.02) benign(0.109) TCGA-D3-A8GM-06 14 107048846 107048846 C T IGHV3-53 Silent p.Q58Q 0.21 TCGA-D3-A8GM-06 14 107078658 107078658 C T IGHV1-58 Silent p.Q22Q 0.29 TCGA-D3-A8GM-06 14 107178855 107178855 G A IGHV2-70 Missense_Mutation p.P108S 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-D3-A8GM-06 14 19574293 19574293 G A POTEG Silent p.R450R 0.14 TCGA-D3-A8GM-06 14 20404440 20404440 G A OR4K1 Silent p.L205L 0.35 TCGA-D3-A8GM-06 14 20404523 20404523 C T OR4K1 Missense_Mutation p.S233L 0.43 tolerated(0.69) benign(0.089) TCGA-D3-A8GM-06 14 20404607 20404607 C T OR4K1 Missense_Mutation p.P261L 0.17 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 14 20443821 20443821 A G OR4K15 Silent p.Q48Q 0.28 TCGA-D3-A8GM-06 14 20502016 20502016 C T OR4K13 Missense_Mutation p.R301K 0.28 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GM-06 14 20502568 20502568 G A OR4K13 Missense_Mutation p.A117V 0.37 tolerated(0.35) benign(0.027) TCGA-D3-A8GM-06 14 20612266 20612266 C T OR4N5 Silent p.I124I 0.33 TCGA-D3-A8GM-06 14 20856084 20856084 C A TEP1 Missense_Mutation p.L888F 0.35 tolerated(0.05) benign(0.132) TCGA-D3-A8GM-06 14 20859909 20859909 C T TEP1 Missense_Mutation p.G649D 0.39 tolerated(0.63) benign(0.178) TCGA-D3-A8GM-06 14 20978633 20978633 G A RNASE10 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D3-A8GM-06 14 21360181 21360181 C T RNASE3 Silent p.L112L 0.39 TCGA-D3-A8GM-06 14 21489998 21489998 G A NDRG2 Missense_Mutation p.P129S 0.31 tolerated(0.08) probably_damaging(0.944) TCGA-D3-A8GM-06 14 21794066 21794066 G A RPGRIP1 Nonsense_Mutation p.W815* 0.33 TCGA-D3-A8GM-06 14 21794136 21794136 C T RPGRIP1 Silent p.I838I 0.29 TCGA-D3-A8GM-06 14 21957463 21957463 A T TOX4 Silent p.T237T 0.37 TCGA-D3-A8GM-06 14 21957464 21957464 C T TOX4 Nonsense_Mutation p.Q238* 0.35 TCGA-D3-A8GM-06 14 22090679 22090679 C T TRAV1-1 Silent p.L95L 0.13 TCGA-D3-A8GM-06 14 22133326 22133326 T C OR4E2 Silent p.T10T 0.09 TCGA-D3-A8GM-06 14 22133461 22133461 C T OR4E2 Silent p.L55L 0.18 TCGA-D3-A8GM-06 14 22134064 22134064 C T OR4E2 Silent p.F256F 0.25 TCGA-D3-A8GM-06 14 22192420 22192420 C T TRAV3 Silent p.F65F 0.22 TCGA-D3-A8GM-06 14 22237128 22237128 C T TRAV6 Missense_Mutation p.P69S 0.39 tolerated(0.6) benign(0.009) TCGA-D3-A8GM-06 14 22251493 22251493 G A TRAV7 Missense_Mutation p.G37E 0.40 tolerated(0.05) probably_damaging(0.998) TCGA-D3-A8GM-06 14 22309454 22309454 C T TRAV12-1 Silent p.I10I 0.20 TCGA-D3-A8GM-06 14 22509297 22509297 G A TRAV20 Missense_Mutation p.E79K 0.26 tolerated(0.27) benign(0.005) TCGA-D3-A8GM-06 14 22592202 22592202 C T TRAV26-1 Missense_Mutation p.T96M 0.24 deleterious(0.04) benign(0.303) TCGA-D3-A8GM-06 14 22600993 22600993 G A TRAV8-7 Missense_Mutation p.R113K 0.52 deleterious_low_confidence(0) benign(0.037) TCGA-D3-A8GM-06 14 22925705 22925705 G A TRDJ2 Missense_Mutation p.G9E 0.25 unknown(0) TCGA-D3-A8GM-06 14 22932058 22932058 C T TRDC Missense_Mutation p.P46S 0.48 tolerated(0.1) benign(0.096) TCGA-D3-A8GM-06 14 23375478 23375478 A T RBM23 Missense_Mutation p.H109Q 0.18 tolerated(0.19) benign(0.007) TCGA-D3-A8GM-06 14 23393554 23393554 G A PRMT5 Missense_Mutation p.S375F 0.33 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GM-06 14 23890214 23890214 C T MYH7 Missense_Mutation p.E1097K 0.29 deleterious(0.03) possibly_damaging(0.796) TCGA-D3-A8GM-06 14 24108075 24108075 T C DHRS2 Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-D3-A8GM-06 14 24114059 24114059 G A DHRS2 Missense_Mutation p.G237E 0.36 tolerated(0.67) benign(0.012) TCGA-D3-A8GM-06 14 24114072 24114072 G A DHRS2 Silent p.R241R 0.15 TCGA-D3-A8GM-06 14 24464300 24464300 C T DHRS4L2 Silent p.F122F 0.34 TCGA-D3-A8GM-06 14 24614643 24614643 G A PSME2 Missense_Mutation p.S59F 0.43 deleterious(0) probably_damaging(0.93) TCGA-D3-A8GM-06 14 24652260 24652260 G A IPO4 Silent p.S781S 0.22 TCGA-D3-A8GM-06 14 24730925 24730925 G A TGM1 Missense_Mutation p.R162C 0.19 tolerated(0.09) possibly_damaging(0.627) TCGA-D3-A8GM-06 14 24769901 24769901 C T NOP9 Silent p.L179L 0.16 TCGA-D3-A8GM-06 14 24788999 24788999 C T ADCY4 Silent p.E894E 0.32 TCGA-D3-A8GM-06 14 24793543 24793543 G A ADCY4 Silent p.I626I 0.25 TCGA-D3-A8GM-06 14 24976648 24976648 A T CMA1 Silent p.I41I 0.19 TCGA-D3-A8GM-06 14 29237309 29237309 G A FOXG1 Missense_Mutation p.R275H 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 14 31553993 31553993 C T AP4S1 Missense_Mutation p.P129S 0.32 tolerated_low_confidence(0.44) benign(0.025) TCGA-D3-A8GM-06 14 31613369 31613369 T A HECTD1 Missense_Mutation p.Y909F 0.37 tolerated(0.37) benign(0.138) TCGA-D3-A8GM-06 14 31613388 31613388 C G HECTD1 Missense_Mutation p.E903Q 0.39 deleterious(0.01) possibly_damaging(0.782) TCGA-D3-A8GM-06 14 33290863 33290863 A G AKAP6 Missense_Mutation p.S1282G 0.30 tolerated(0.11) benign(0.015) TCGA-D3-A8GM-06 14 35249492 35249492 A G BAZ1A Silent p.D712D 0.33 TCGA-D3-A8GM-06 14 35343712 35343712 G A BAZ1A Silent p.I33I 0.38 TCGA-D3-A8GM-06 14 36840622 36840622 G A DPPA3P2 RNA 0.26 TCGA-D3-A8GM-06 14 39717203 39717203 G A MIA2 Silent p.K475K 0.26 TCGA-D3-A8GM-06 14 39818085 39818085 C T CTAGE5 Missense_Mutation p.P723S 0.26 deleterious(0.05) benign(0.426) TCGA-D3-A8GM-06 14 44975654 44975654 T C FSCB Silent p.E179E 0.41 TCGA-D3-A8GM-06 14 45521666 45521666 C T FAM179B Silent p.F1394F 0.27 TCGA-D3-A8GM-06 14 47342703 47342703 G A MDGA2 Silent p.N895N 0.36 TCGA-D3-A8GM-06 14 50304857 50304857 G A NEMF Missense_Mutation p.P192S 0.27 tolerated(0.45) benign(0.064) TCGA-D3-A8GM-06 14 50581091 50581091 T A VCPKMT Missense_Mutation p.D161V 0.45 tolerated(0.06) benign(0.061) TCGA-D3-A8GM-06 14 50619808 50619808 G A SOS2 Missense_Mutation p.S714F 0.40 deleterious(0.02) benign(0.393) TCGA-D3-A8GM-06 14 50734472 50734472 T C L2HGDH Missense_Mutation p.S355G 0.46 tolerated(0.31) probably_damaging(0.95) TCGA-D3-A8GM-06 14 51398404 51398404 C T PYGL Missense_Mutation p.R172Q 0.43 tolerated(0.59) benign(0.009) TCGA-D3-A8GM-06 14 52505559 52505559 G A NID2 Silent p.T721T 0.43 TCGA-D3-A8GM-06 14 52782046 52782046 G A PTGER2 Silent p.T260T 0.28 TCGA-D3-A8GM-06 14 52782047 52782047 G A PTGER2 Missense_Mutation p.D261N 0.27 tolerated(0.07) possibly_damaging(0.893) TCGA-D3-A8GM-06 14 58036636 58036636 G C SLC35F4 Silent p.T368T 0.23 TCGA-D3-A8GM-06 14 60072093 60072093 G A RTN1 Missense_Mutation p.S702F 0.33 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 14 60072106 60072106 C T RTN1 Missense_Mutation p.D698N 0.32 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 14 60616821 60616821 T A DHRS7 Missense_Mutation p.N240Y 0.35 deleterious(0) possibly_damaging(0.541) TCGA-D3-A8GM-06 14 61997130 61997130 C T RP11-47I22.4 Silent p.L31L 0.23 TCGA-D3-A8GM-06 14 62187114 62187114 G A HIF1A Missense_Mutation p.R41H 0.40 deleterious(0) possibly_damaging(0.522) TCGA-D3-A8GM-06 14 62547608 62547608 G A SYT16 Silent p.K350K 0.19 TCGA-D3-A8GM-06 14 62547898 62547898 G A SYT16 Missense_Mutation p.R447K 0.28 tolerated(0.7) benign(0.042) TCGA-D3-A8GM-06 14 63174663 63174663 G A KCNH5 Missense_Mutation p.P844S 0.28 tolerated_low_confidence(0.5) benign(0.001) TCGA-D3-A8GM-06 14 63316402 63316402 C T KCNH5 Nonsense_Mutation p.W513* 0.35 TCGA-D3-A8GM-06 14 63416874 63416874 G A KCNH5 Missense_Mutation p.S449L 0.25 deleterious(0) possibly_damaging(0.843) TCGA-D3-A8GM-06 14 63784447 63784447 C T GPHB5 RNA 0.37 TCGA-D3-A8GM-06 14 64408445 64408445 C T SYNE2 Silent p.F58F 0.25 TCGA-D3-A8GM-06 14 64681172 64681172 C T SYNE2 Silent p.Y6439Y 0.30 TCGA-D3-A8GM-06 14 65209975 65209975 C T PLEKHG3 Missense_Mutation p.R1016C 0.48 tolerated(0.17) benign(0.028) TCGA-D3-A8GM-06 14 65216057 65216057 C T SPTB Silent p.E2318E 0.52 TCGA-D3-A8GM-06 14 65250991 65250991 C T SPTB Missense_Mutation p.E1326K 0.30 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 14 65253234 65253234 C T SPTB Nonsense_Mutation p.W1150* 0.24 TCGA-D3-A8GM-06 14 65390804 65390804 C T CHURC1-FNTB Silent p.S46S 0.35 TCGA-D3-A8GM-06 14 68193808 68193808 G A RDH12 Missense_Mutation p.D187N 0.20 tolerated(0.09) benign(0.098) TCGA-D3-A8GM-06 14 70263629 70263629 C T SLC10A1 Missense_Mutation p.V82I 0.46 tolerated(0.51) benign(0.02) TCGA-D3-A8GM-06 14 70633445 70633445 G A SLC8A3 Silent p.P565P 0.30 TCGA-D3-A8GM-06 14 70633446 70633446 G A SLC8A3 Missense_Mutation p.P565L 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 14 70635068 70635068 G A SLC8A3 Silent p.F24F 0.43 TCGA-D3-A8GM-06 14 70713148 70713148 C T ADAM21P1 RNA 0.20 TCGA-D3-A8GM-06 14 70925421 70925421 A T ADAM21 Missense_Mutation p.E402V 0.43 tolerated(0.06) benign(0.01) TCGA-D3-A8GM-06 14 71064362 71064362 A C MED6 Missense_Mutation p.M52R 0.34 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GM-06 14 71205051 71205051 C T MAP3K9 Silent p.E585E 0.38 TCGA-D3-A8GM-06 14 71555941 71555941 C T PCNX Missense_Mutation p.A1824V 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 14 72055123 72055123 C T SIPA1L1 Silent p.I178I 0.42 TCGA-D3-A8GM-06 14 72085534 72085534 G A SIPA1L1 Missense_Mutation p.R520K 0.25 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GM-06 14 72125137 72125137 C T SIPA1L1 Missense_Mutation p.P694L 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 14 72137892 72137892 G A SIPA1L1 Missense_Mutation p.G771E 0.25 deleterious(0) possibly_damaging(0.842) TCGA-D3-A8GM-06 14 72431560 72431560 G A RGS6 Missense_Mutation p.E18K 0.27 tolerated_low_confidence(0.09) benign(0.027) TCGA-D3-A8GM-06 14 72939611 72939611 A G RGS6 Missense_Mutation p.K190E 0.24 deleterious(0.03) benign(0.097) TCGA-D3-A8GM-06 14 73029194 73029194 C T RGS6 3'Flank 0.36 TCGA-D3-A8GM-06 14 73238596 73238596 C T DPF3 Missense_Mutation p.G13E 0.38 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 14 73718527 73718527 G A PAPLN Missense_Mutation p.E249K 0.20 deleterious(0) possibly_damaging(0.898) TCGA-D3-A8GM-06 14 74042157 74042157 C T ACOT2 Silent p.L464L 0.35 TCGA-D3-A8GM-06 14 74203974 74203974 C T ELMSAN1 Silent p.R492R 0.41 TCGA-D3-A8GM-06 14 74428496 74428496 C T COQ6 Missense_Mutation p.L423F 0.23 tolerated(0.08) probably_damaging(0.925) TCGA-D3-A8GM-06 14 74756194 74756194 G A ABCD4 Missense_Mutation p.P483L 0.28 deleterious(0) benign(0.026) TCGA-D3-A8GM-06 14 74967557 74967557 C T LTBP2 3'UTR 0.39 TCGA-D3-A8GM-06 14 75230983 75230983 C A YLPM1 Missense_Mutation p.P264H 0.42 unknown(0) TCGA-D3-A8GM-06 14 75276106 75276106 C T YLPM1 Silent p.P1515P 0.15 TCGA-D3-A8GM-06 14 75321865 75321865 C T PROX2 Silent p.E356E 0.42 TCGA-D3-A8GM-06 14 76224198 76224198 G A TTLL5 Intron 0.32 TCGA-D3-A8GM-06 14 76224200 76224200 C A TTLL5 Intron 0.32 TCGA-D3-A8GM-06 14 76259262 76259262 C T TTLL5 Missense_Mutation p.S997L 0.18 tolerated(0.5) benign(0.002) TCGA-D3-A8GM-06 14 76452102 76452102 C T IFT43 5'Flank 0.23 TCGA-D3-A8GM-06 14 77292891 77292891 G A C14orf166B Missense_Mutation p.G18E 0.17 tolerated_low_confidence(0.46) benign(0.004) TCGA-D3-A8GM-06 14 77579904 77579904 C T CIPC Missense_Mutation p.S148F 0.20 deleterious(0.02) benign(0.406) TCGA-D3-A8GM-06 14 77579905 77579905 C T CIPC Silent p.S148S 0.20 TCGA-D3-A8GM-06 14 77873915 77873915 G A NOXRED1 Silent p.F141F 0.43 TCGA-D3-A8GM-06 14 81251784 81251784 G A CEP128 Nonsense_Mutation p.Q556* 0.28 TCGA-D3-A8GM-06 14 81574987 81574987 G A TSHR Intron 0.22 TCGA-D3-A8GM-06 14 81737050 81737050 C T STON2 Silent p.R859R 0.29 TCGA-D3-A8GM-06 14 88477912 88477912 C T GPR65 Missense_Mutation p.P241S 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 14 88729597 88729597 G A KCNK10 Silent p.F117F 0.32 TCGA-D3-A8GM-06 14 89060978 89060978 C T ZC3H14 Intron 0.29 TCGA-D3-A8GM-06 14 89109367 89109367 C T EML5 Splice_Site p.X1370_splice 0.32 TCGA-D3-A8GM-06 14 89202897 89202897 C T EML5 Missense_Mutation p.R287K 0.33 deleterious(0) possibly_damaging(0.841) TCGA-D3-A8GM-06 14 91386581 91386581 C A RPS6KA5 Nonsense_Mutation p.G259* 0.43 TCGA-D3-A8GM-06 14 91747835 91747835 G A CCDC88C Silent p.S1555S 0.49 TCGA-D3-A8GM-06 14 92266635 92266635 C T TC2N Missense_Mutation p.R184Q 0.45 tolerated(0.08) benign(0.006) TCGA-D3-A8GM-06 14 92343867 92343867 G A FBLN5 Silent p.I383I 0.40 TCGA-D3-A8GM-06 14 93118152 93118152 C A RIN3 Missense_Mutation p.P253H 0.34 deleterious(0.03) unknown(0) TCGA-D3-A8GM-06 14 93118599 93118599 C T RIN3 Missense_Mutation p.P402L 0.22 tolerated(0.26) benign(0.014) TCGA-D3-A8GM-06 14 93172971 93172971 G A LGMN Missense_Mutation p.R350C 0.15 deleterious(0.01) possibly_damaging(0.462) TCGA-D3-A8GM-06 14 93182546 93182546 G A LGMN Silent p.F113F 0.25 TCGA-D3-A8GM-06 14 93712368 93712368 G A BTBD7 Missense_Mutation p.P796S 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GM-06 14 93813698 93813698 C T COX8C Silent p.F28F 0.54 TCGA-D3-A8GM-06 14 94044327 94044327 G A UNC79 Missense_Mutation p.G607E 0.27 tolerated(0.1) possibly_damaging(0.77) TCGA-D3-A8GM-06 14 94046598 94046598 C T UNC79 Missense_Mutation p.S669F 0.40 tolerated(0.1) probably_damaging(0.988) TCGA-D3-A8GM-06 14 94048661 94048661 G A UNC79 Missense_Mutation p.G748D 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.767) TCGA-D3-A8GM-06 14 94088424 94088424 C T UNC79 Silent p.T1438T 0.31 TCGA-D3-A8GM-06 14 94245631 94245631 G A PRIMA1 Silent p.S40S 0.29 TCGA-D3-A8GM-06 14 94510373 94510373 A G OTUB2 Missense_Mutation p.E92G 0.37 deleterious(0.01) probably_damaging(0.912) TCGA-D3-A8GM-06 14 94526584 94526584 T C DDX24 Silent p.L591L 0.34 TCGA-D3-A8GM-06 14 94707034 94707034 C A PPP4R4 Missense_Mutation p.P293H 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 14 94711973 94711973 C A PPP4R4 Missense_Mutation p.S465Y 0.26 tolerated(0.07) benign(0.059) TCGA-D3-A8GM-06 14 94754734 94754734 C T SERPINA10 Missense_Mutation p.G294E 0.40 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GM-06 14 94776177 94776177 A G SERPINA6 Silent p.N260N 0.38 TCGA-D3-A8GM-06 14 94909495 94909495 G A SERPINA11 Nonsense_Mutation p.Q329* 0.35 TCGA-D3-A8GM-06 14 94935781 94935781 C T SERPINA9 Missense_Mutation p.G151R 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 14 95056476 95056476 G A SERPINA5 Missense_Mutation p.D240N 0.35 tolerated(0.12) possibly_damaging(0.85) TCGA-D3-A8GM-06 14 95080899 95080899 C T SERPINA3 Nonsense_Mutation p.R41* 0.35 TCGA-D3-A8GM-06 14 95562392 95562392 G T DICER1 Missense_Mutation p.A1622D 0.43 tolerated(0.32) benign(0.009) TCGA-D3-A8GM-06 14 95934240 95934240 G A SYNE3 Missense_Mutation p.A70V 0.28 deleterious(0.04) benign(0.234) TCGA-D3-A8GM-06 14 96137761 96137761 G A TCL6 RNA 0.46 TCGA-D3-A8GM-06 14 96152841 96152841 C T TCL1B Missense_Mutation p.P13S 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 14 96152842 96152842 C T TCL1B Missense_Mutation p.P13L 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 14 96707908 96707908 C T BDKRB2 3'UTR 0.41 TCGA-D3-A8GM-06 14 96752133 96752133 G A ATG2B Missense_Mutation p.R2066W 0.22 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 14 96864571 96864571 C T AK7 Missense_Mutation p.R89W 0.17 deleterious(0) possibly_damaging(0.462) TCGA-D3-A8GM-06 14 96912853 96912858 GAGTGA CAGTG AK7 Splice_Site p.X260_splice 0.14 TCGA-D3-A8GM-06 15 100331039 100331039 A C AC090825.1 5'Flank 0.28 TCGA-D3-A8GM-06 15 100942823 100942823 G A CERS3 3'UTR 0.55 TCGA-D3-A8GM-06 15 101970216 101970216 C T PCSK6 Missense_Mutation p.R236Q 0.39 tolerated(0.18) probably_damaging(0.954) TCGA-D3-A8GM-06 15 20193343 20193343 G A IGHV3OR15-7 Missense_Mutation p.L10F 0.28 tolerated_low_confidence(0.05) possibly_damaging(0.864) TCGA-D3-A8GM-06 15 20489461 20489461 C T CHEK2P2 RNA 0.08 TCGA-D3-A8GM-06 15 20495396 20495396 C T CHEK2P2 RNA 0.08 TCGA-D3-A8GM-06 15 20658950 20658950 C T HERC2P3 RNA 0.21 TCGA-D3-A8GM-06 15 22368758 22368758 C T OR4M2 Silent p.F61F 0.16 TCGA-D3-A8GM-06 15 22473081 22473081 C T IGHV4OR15-8 Missense_Mutation p.G64R 0.10 deleterious(0.03) possibly_damaging(0.699) TCGA-D3-A8GM-06 15 22956423 22956423 C T CYFIP1 Intron 0.35 TCGA-D3-A8GM-06 15 23261918 23261918 C T GOLGA8I Missense_Mutation p.R344W 0.34 tolerated(0.13) benign(0.019) TCGA-D3-A8GM-06 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.34 tolerated(0.56) benign(0.041) TCGA-D3-A8GM-06 15 25321087 25321087 G A SNORD116-11 RNA 0.30 TCGA-D3-A8GM-06 15 25468235 25468235 G A SNORD115-27 3'Flank 0.45 TCGA-D3-A8GM-06 15 25468236 25468236 G A SNORD115-27 3'Flank 0.45 TCGA-D3-A8GM-06 15 25472104 25472104 C T SNORD115-33 5'Flank 0.34 TCGA-D3-A8GM-06 15 25486739 25486739 C T SNORD115-40 5'Flank 0.44 TCGA-D3-A8GM-06 15 27188544 27188544 A - GABRA5 Frame_Shift_Del p.A356Pfs*15 0.33 TCGA-D3-A8GM-06 15 28259993 28259993 C T OCA2 Missense_Mutation p.G325R 0.39 tolerated(0.13) benign(0.056) TCGA-D3-A8GM-06 15 28901025 28901025 C T HERC2P9 RNA 0.36 TCGA-D3-A8GM-06 15 30026542 30026542 G A TJP1 Silent p.V484V 0.28 TCGA-D3-A8GM-06 15 31822960 31822960 G A OTUD7A Missense_Mutation p.P201L 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 15 31822961 31822961 G A OTUD7A Missense_Mutation p.P201S 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 15 31862335 31862335 T A OTUD7A Missense_Mutation p.N73Y 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A8GM-06 15 32915777 32915777 A G ARHGAP11A Silent p.L95L 0.26 TCGA-D3-A8GM-06 15 32929395 32929395 T A ARHGAP11A Silent p.V807V 0.37 TCGA-D3-A8GM-06 15 34129984 34129984 G A RYR3 Missense_Mutation p.G3935S 0.39 benign(0.004) TCGA-D3-A8GM-06 15 34355854 34355854 G A CHRM5 Silent p.E312E 0.27 TCGA-D3-A8GM-06 15 37100621 37100621 G A C15orf41 Silent p.T271T 0.46 TCGA-D3-A8GM-06 15 38614498 38614498 A - SPRED1 Frame_Shift_Del p.H90Tfs*31 0.24 TCGA-D3-A8GM-06 15 38616976 38616977 - A SPRED1 Frame_Shift_Ins p.N132Kfs*2 0.18 TCGA-D3-A8GM-06 15 40628862 40628862 C T C15orf52 Missense_Mutation p.R311Q 0.12 tolerated(0.12) benign(0.282) TCGA-D3-A8GM-06 15 40675139 40675139 C T KNSTRN Silent p.L35L 0.31 TCGA-D3-A8GM-06 15 40857006 40857006 C A C15orf57 5'UTR 0.23 TCGA-D3-A8GM-06 15 41071491 41071491 G A DNAJC17 Silent p.V75V 0.35 TCGA-D3-A8GM-06 15 41796170 41796170 C T LTK 3'UTR 0.42 TCGA-D3-A8GM-06 15 42149625 42149625 C A SPTBN5 Missense_Mutation p.R2811I 0.38 possibly_damaging(0.771) TCGA-D3-A8GM-06 15 42164516 42164516 C T SPTBN5 Missense_Mutation p.E1717K 0.12 benign(0.046) TCGA-D3-A8GM-06 15 42360960 42360960 G A PLA2G4D Silent p.L804L 0.50 TCGA-D3-A8GM-06 15 42386641 42386641 G A PLA2G4D Missense_Mutation p.P6L 0.27 deleterious_low_confidence(0.03) benign(0.365) TCGA-D3-A8GM-06 15 42731772 42731772 G A ZNF106 Silent p.L1312L 0.17 TCGA-D3-A8GM-06 15 43021551 43021551 C T CDAN1 Missense_Mutation p.R806Q 0.31 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GM-06 15 43044459 43044459 G A TTBK2 Silent p.L995L 0.37 TCGA-D3-A8GM-06 15 43489457 43489457 G C EPB42 3'UTR 0.39 TCGA-D3-A8GM-06 15 43712602 43712602 A G TP53BP1 Missense_Mutation p.Y1528H 0.30 deleterious(0.04) possibly_damaging(0.85) TCGA-D3-A8GM-06 15 43896982 43896982 G A STRC Silent p.F1331F 0.34 TCGA-D3-A8GM-06 15 44094053 44094053 T - HYPK 3'UTR 0.35 TCGA-D3-A8GM-06 15 44920913 44920913 A G SPG11 Missense_Mutation p.V674A 0.23 tolerated(0.28) benign(0.037) TCGA-D3-A8GM-06 15 45387651 45387651 T C DUOX2 Missense_Mutation p.Q1408R 0.12 tolerated(0.59) benign(0.032) TCGA-D3-A8GM-06 15 45409289 45409289 G A DUOXA2 Nonsense_Mutation p.W185* 0.24 TCGA-D3-A8GM-06 15 45567790 45567790 C T SLC28A2 3'UTR 0.30 TCGA-D3-A8GM-06 15 48787416 48787416 G A FBN1 Nonsense_Mutation p.R861* 0.11 TCGA-D3-A8GM-06 15 49089683 49089683 A G CEP152 Missense_Mutation p.Y119H 0.35 deleterious(0.02) possibly_damaging(0.865) TCGA-D3-A8GM-06 15 49118076 49118076 T C SHC4 3'UTR 0.19 TCGA-D3-A8GM-06 15 49143435 49143435 G A SHC4 Missense_Mutation p.S418F 0.27 tolerated(0.1) possibly_damaging(0.653) TCGA-D3-A8GM-06 15 49627672 49627672 A G FAM227B Silent p.R431R 0.13 TCGA-D3-A8GM-06 15 51350462 51350462 G A TNFAIP8L3 Silent p.I165I 0.29 TCGA-D3-A8GM-06 15 51763534 51763534 G A DMXL2 Silent p.V2426V 0.33 TCGA-D3-A8GM-06 15 52015640 52015640 G T LYSMD2 3'UTR 0.41 TCGA-D3-A8GM-06 15 52416743 52416743 T C GNB5 Missense_Mutation p.N368S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 15 52536610 52536610 C T MYO5C Missense_Mutation p.R778Q 0.33 deleterious(0.04) benign(0.014) TCGA-D3-A8GM-06 15 54306810 54306810 C T UNC13C Silent p.F570F 0.23 TCGA-D3-A8GM-06 15 54542502 54542502 G A UNC13C Nonsense_Mutation p.W1103* 0.36 TCGA-D3-A8GM-06 15 54556452 54556452 G A UNC13C Missense_Mutation p.E1179K 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GM-06 15 54614291 54614291 G A UNC13C Missense_Mutation p.G1475S 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GM-06 15 54825114 54825114 G A UNC13C Splice_Site p.X1849_splice 0.36 TCGA-D3-A8GM-06 15 55839052 55839052 A C PYGO1 Silent p.P143P 0.20 TCGA-D3-A8GM-06 15 55965601 55965601 G A PRTG Missense_Mutation p.S607L 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-D3-A8GM-06 15 57731026 57731026 C T CGNL1 Missense_Mutation p.P277S 0.28 deleterious(0.02) possibly_damaging(0.601) TCGA-D3-A8GM-06 15 58430862 58430862 C T AQP9 Missense_Mutation p.T33M 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A8GM-06 15 58471356 58471356 C T AQP9 Silent p.I175I 0.31 TCGA-D3-A8GM-06 15 58476397 58476397 G A AQP9 3'UTR 0.47 TCGA-D3-A8GM-06 15 58957308 58957308 C A ADAM10 Missense_Mutation p.E191D 0.26 tolerated(0.31) benign(0.009) TCGA-D3-A8GM-06 15 59911610 59911610 C T GCNT3 Silent p.C391C 0.29 TCGA-D3-A8GM-06 15 59911746 59911746 G A GCNT3 Missense_Mutation p.E437K 0.33 tolerated(0.44) benign(0.004) TCGA-D3-A8GM-06 15 60792114 60792114 G A RORA Nonsense_Mutation p.R495* 0.42 TCGA-D3-A8GM-06 15 60907093 60907093 C T RORA Intron 0.26 TCGA-D3-A8GM-06 15 60907098 60907098 C T RORA Intron 0.28 TCGA-D3-A8GM-06 15 62269366 62269366 G A VPS13C Missense_Mutation p.P775S 0.27 tolerated(1) benign(0.006) TCGA-D3-A8GM-06 15 62360020 62360020 G A C2CD4A Missense_Mutation p.E70K 0.29 tolerated(0.14) benign(0.01) TCGA-D3-A8GM-06 15 63092893 63092893 G A TLN2 Silent p.K2134K 0.18 TCGA-D3-A8GM-06 15 63882996 63882996 C T USP3 Nonsense_Mutation p.Q512* 0.28 TCGA-D3-A8GM-06 15 64464041 64464041 G A CSNK1G1 3'UTR 0.36 TCGA-D3-A8GM-06 15 64967693 64967693 T C ZNF609 Silent p.F880F 0.25 TCGA-D3-A8GM-06 15 65298457 65298457 G A MTFMT Missense_Mutation p.L296F 0.38 tolerated(0.35) benign(0.019) TCGA-D3-A8GM-06 15 65458977 65458977 G C CLPX Missense_Mutation p.P169A 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 15 65489767 65489767 C T CILP Missense_Mutation p.A953T 0.33 deleterious(0.02) benign(0.242) TCGA-D3-A8GM-06 15 65917430 65917430 G A SLC24A1 Missense_Mutation p.A338T 0.40 benign(0) TCGA-D3-A8GM-06 15 66215207 66215207 C T MEGF11 Silent p.G592G 0.35 TCGA-D3-A8GM-06 15 66625174 66625174 C T DIS3L Nonsense_Mutation p.R928* 0.31 TCGA-D3-A8GM-06 15 68446029 68446029 T - PIAS1 Frame_Shift_Del p.L311* 0.18 TCGA-D3-A8GM-06 15 69006938 69006938 G A CORO2B Missense_Mutation p.G269E 0.32 deleterious(0.02) benign(0.445) TCGA-D3-A8GM-06 15 69018377 69018377 C T CORO2B 3'UTR 0.67 TCGA-D3-A8GM-06 15 69652416 69652416 C T PAQR5 5'UTR 0.36 TCGA-D3-A8GM-06 15 71305234 71305234 C T LRRC49 Missense_Mutation p.S567F 0.33 tolerated(0.3) possibly_damaging(0.583) TCGA-D3-A8GM-06 15 71341975 71341975 T A LRRC49 3'UTR 0.35 TCGA-D3-A8GM-06 15 71341976 71341976 T A LRRC49 3'UTR 0.36 TCGA-D3-A8GM-06 15 72057461 72057461 C T THSD4 Silent p.L898L 0.29 TCGA-D3-A8GM-06 15 72105821 72105821 G A CTD-2524L6.3 5'Flank 0.50 TCGA-D3-A8GM-06 15 72231198 72231199 - T MYO9A Frame_Shift_Ins p.N791Kfs*4 0.31 TCGA-D3-A8GM-06 15 72320104 72320104 C T MYO9A Silent p.K322K 0.31 TCGA-D3-A8GM-06 15 72698958 72698958 C T TMEM202 Missense_Mutation p.S118F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 15 74367317 74367318 - G GOLGA6A Frame_Shift_Ins p.A292Sfs*12 0.08 TCGA-D3-A8GM-06 15 74426564 74426564 C T ISLR2 Missense_Mutation p.A490V 0.50 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 15 74630361 74630361 G A CYP11A1 Silent p.P506P 0.26 TCGA-D3-A8GM-06 15 75684652 75684652 G A SIN3A Missense_Mutation p.R928W 0.32 deleterious(0) possibly_damaging(0.564) TCGA-D3-A8GM-06 15 75684653 75684653 T C SIN3A Silent p.E927E 0.31 TCGA-D3-A8GM-06 15 75969124 75969124 G A CSPG4 Silent p.S1912S 0.39 TCGA-D3-A8GM-06 15 76430089 76430089 C T C15orf27 Missense_Mutation p.S27F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GM-06 15 78305601 78305601 C T TBC1D2B Missense_Mutation p.V612I 0.34 tolerated(0.14) benign(0.012) TCGA-D3-A8GM-06 15 78393560 78393560 G A SH2D7 Missense_Mutation p.G322E 0.42 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GM-06 15 78416051 78416051 G A CIB2 Missense_Mutation p.L28F 0.27 deleterious(0) probably_damaging(0.921) TCGA-D3-A8GM-06 15 78466040 78466040 C T ACSBG1 Missense_Mutation p.E662K 0.28 deleterious(0.02) benign(0.194) TCGA-D3-A8GM-06 15 78780573 78780573 C T IREB2 Missense_Mutation p.R616C 0.27 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 15 79059220 79059220 G A ADAMTS7 Silent p.S1011S 0.33 TCGA-D3-A8GM-06 15 79059312 79059312 G A ADAMTS7 Nonsense_Mutation p.Q981* 0.33 TCGA-D3-A8GM-06 15 79748763 79748763 A C KIAA1024 Missense_Mutation p.N92H 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 15 80873632 80873632 C T ARNT2 Missense_Mutation p.T602M 0.25 deleterious(0) benign(0.277) TCGA-D3-A8GM-06 15 81199060 81199060 G A KIAA1199 Missense_Mutation p.E490K 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 15 81592643 81592643 C T IL16 Silent p.S992S 0.19 TCGA-D3-A8GM-06 15 81625511 81625511 T C TMC3 Missense_Mutation p.H851R 0.38 tolerated_low_confidence(0.21) benign(0.005) TCGA-D3-A8GM-06 15 81637209 81637209 C T TMC3 Silent p.E472E 0.24 TCGA-D3-A8GM-06 15 82564030 82564030 G A FAM154B Missense_Mutation p.G47D 0.34 tolerated(0.26) benign(0.033) TCGA-D3-A8GM-06 15 83455633 83455633 C T FSD2 Silent p.E170E 0.30 TCGA-D3-A8GM-06 15 83658715 83658715 C T FAM103A1 Nonsense_Mutation p.R85* 0.22 TCGA-D3-A8GM-06 15 85433744 85433744 G T SLC28A1 Missense_Mutation p.G86C 0.35 tolerated(0.4) benign(0.001) TCGA-D3-A8GM-06 15 86822991 86822991 C T AGBL1 Missense_Mutation p.P687S 0.26 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GM-06 15 86823011 86823011 C T AGBL1 Silent p.L693L 0.28 TCGA-D3-A8GM-06 15 88420310 88420310 G A NTRK3 Silent p.P792P 0.31 TCGA-D3-A8GM-06 15 89400176 89400176 G A ACAN Missense_Mutation p.G1454R 0.27 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 15 89400177 89400177 G A ACAN Missense_Mutation p.G1454E 0.27 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 15 89401490 89401490 C T ACAN Missense_Mutation p.P1892S 0.25 tolerated(0.09) probably_damaging(0.999) TCGA-D3-A8GM-06 15 89401835 89401835 G A ACAN Missense_Mutation p.D2007N 0.33 deleterious(0.01) possibly_damaging(0.638) TCGA-D3-A8GM-06 15 89402207 89402207 G A ACAN Missense_Mutation p.E2131K 0.33 tolerated(0.36) possibly_damaging(0.694) TCGA-D3-A8GM-06 15 89403580 89403580 G A ACAN Missense_Mutation p.E2286K 0.37 tolerated(0.61) benign(0.042) TCGA-D3-A8GM-06 15 89415273 89415273 G A ACAN Missense_Mutation p.R2382K 0.29 tolerated(0.25) benign(0.146) TCGA-D3-A8GM-06 15 89424791 89424791 G A HAPLN3 Missense_Mutation p.P97L 0.36 tolerated(0.32) benign(0.006) TCGA-D3-A8GM-06 15 89424792 89424792 G A HAPLN3 Missense_Mutation p.P97S 0.38 tolerated(0.62) benign(0.232) TCGA-D3-A8GM-06 15 90023618 90023618 T C RHCG Missense_Mutation p.M182V 0.30 deleterious(0.02) possibly_damaging(0.457) TCGA-D3-A8GM-06 15 90278735 90278735 T C WDR93 Missense_Mutation p.L520P 0.36 tolerated(0.19) benign(0.02) TCGA-D3-A8GM-06 15 90336325 90336325 G A ANPEP Silent p.F730F 0.30 TCGA-D3-A8GM-06 15 90785048 90785048 C A GDPGP1 Missense_Mutation p.S303Y 0.39 deleterious(0.01) possibly_damaging(0.739) TCGA-D3-A8GM-06 15 90800460 90800460 G A TTLL13 Missense_Mutation p.G266S 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 15 90801332 90801332 G A TTLL13 Missense_Mutation p.G333E 0.31 tolerated(0.88) benign(0.001) TCGA-D3-A8GM-06 15 91328234 91328234 C T BLM Missense_Mutation p.L916F 0.41 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 15 91437036 91437036 A C FES Missense_Mutation p.N733T 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GM-06 15 91500927 91500927 G - RCCD1 Frame_Shift_Del p.G219Afs*7 0.15 TCGA-D3-A8GM-06 15 91769623 91769623 G A SV2B Missense_Mutation p.E44K 0.26 deleterious(0) possibly_damaging(0.756) TCGA-D3-A8GM-06 15 92988151 92988151 C T ST8SIA2 Silent p.A278A 0.38 TCGA-D3-A8GM-06 15 94841937 94841937 G A MCTP2 Missense_Mutation p.G148E 0.30 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 15 94986180 94986180 A T MCTP2 Missense_Mutation p.E747D 0.28 tolerated(0.52) benign(0.019) TCGA-D3-A8GM-06 15 95022262 95022262 A G MCTP2 Nonstop_Mutation p.*879Wext*16 0.34 TCGA-D3-A8GM-06 15 97326811 97326811 G A SPATA8 5'UTR 0.26 TCGA-D3-A8GM-06 15 99670973 99670973 G A SYNM Missense_Mutation p.R802Q 0.27 tolerated(0.6) benign(0) TCGA-D3-A8GM-06 16 1004603 1004603 G A LMF1 Missense_Mutation p.P86L 0.15 deleterious(0) probably_damaging(0.95) TCGA-D3-A8GM-06 16 10783145 10783145 C T TEKT5 Missense_Mutation p.M228I 0.13 tolerated(0.06) benign(0.021) TCGA-D3-A8GM-06 16 11001151 11001151 G A CIITA Missense_Mutation p.R601Q 0.15 tolerated(0.73) benign(0.001) TCGA-D3-A8GM-06 16 11260374 11260374 C T CLEC16A Missense_Mutation p.S924L 0.15 tolerated(0.15) benign(0.003) TCGA-D3-A8GM-06 16 1143860 1143860 G A C1QTNF8 Nonsense_Mutation p.Q134* 0.19 TCGA-D3-A8GM-06 16 11990461 11990461 A T GSPT1 Silent p.G206G 0.31 TCGA-D3-A8GM-06 16 1374886 1374886 A G UBE2I 3'UTR 0.44 TCGA-D3-A8GM-06 16 14328066 14328066 C - MKL2 Frame_Shift_Del p.P254Hfs*23 0.16 TCGA-D3-A8GM-06 16 14340690 14340690 A C MKL2 Missense_Mutation p.T525P 0.30 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 16 14340691 14340691 C T MKL2 Missense_Mutation p.T525I 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 14355135 14355135 C T MKL2 Missense_Mutation p.P995L 0.14 deleterious(0) possibly_damaging(0.691) TCGA-D3-A8GM-06 16 14355241 14355241 G A MKL2 Silent p.A1030A 0.17 TCGA-D3-A8GM-06 16 15690676 15690676 G A KIAA0430 Silent p.C1701C 0.41 TCGA-D3-A8GM-06 16 15711301 15711301 G A KIAA0430 Silent p.L938L 0.31 TCGA-D3-A8GM-06 16 15797881 15797881 G A MYH11 Silent p.D1969D 0.26 TCGA-D3-A8GM-06 16 15832535 15832535 A C MYH11 Missense_Mutation p.L1010R 0.26 benign(0.221) TCGA-D3-A8GM-06 16 16276722 16276722 G A ABCC6 Missense_Mutation p.S670F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 16 16291884 16291884 G A ABCC6 Silent p.L444L 0.35 TCGA-D3-A8GM-06 16 1630777 1630777 G A IFT140 Nonsense_Mutation p.Q503* 0.24 TCGA-D3-A8GM-06 16 1735556 1735556 C A HN1L Missense_Mutation p.P54H 0.16 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GM-06 16 18849536 18849536 G A SMG1 Missense_Mutation p.R2405C 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 16 19020698 19020698 G A TMC7 Missense_Mutation p.R91Q 0.20 deleterious(0.04) probably_damaging(0.954) TCGA-D3-A8GM-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.17 deleterious(0.03) benign(0.001) TCGA-D3-A8GM-06 16 19477555 19477555 G T TMC5 Missense_Mutation p.S546I 0.26 deleterious(0) possibly_damaging(0.724) TCGA-D3-A8GM-06 16 19483431 19483431 C T TMC5 Nonsense_Mutation p.Q602* 0.20 TCGA-D3-A8GM-06 16 19659110 19659110 C T C16orf62 Missense_Mutation p.S734F 0.28 deleterious(0.01) probably_damaging(0.935) TCGA-D3-A8GM-06 16 19702716 19702716 C T C16orf62 Silent p.L946L 0.22 TCGA-D3-A8GM-06 16 1997363 1997363 G T RPL3L Silent p.R174R 0.20 TCGA-D3-A8GM-06 16 20043298 20043298 G A GPR139 Missense_Mutation p.A274V 0.25 tolerated(0.06) probably_damaging(0.996) TCGA-D3-A8GM-06 16 20043849 20043849 G A GPR139 Silent p.F90F 0.11 TCGA-D3-A8GM-06 16 2028653 2028653 C A TBL3 Silent p.T798T 0.18 TCGA-D3-A8GM-06 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.41 deleterious(0) possibly_damaging(0.505) TCGA-D3-A8GM-06 16 20376838 20376838 G A PDILT Missense_Mutation p.P381S 0.26 deleterious(0.04) benign(0.275) TCGA-D3-A8GM-06 16 20442376 20442376 C T ACSM5 Missense_Mutation p.S396F 0.30 tolerated(0.1) benign(0.02) TCGA-D3-A8GM-06 16 20548624 20548624 G A ACSM2B Nonsense_Mutation p.R564* 0.21 TCGA-D3-A8GM-06 16 20557761 20557761 G A ACSM2B Silent p.I378I 0.19 TCGA-D3-A8GM-06 16 20673121 20673121 G A ACSM1 Silent p.F329F 0.26 TCGA-D3-A8GM-06 16 20871470 20871470 G A DCUN1D3 Missense_Mutation p.P218L 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 20974948 20974948 A C DNAH3 Missense_Mutation p.W3420G 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 20975047 20975047 C T DNAH3 Missense_Mutation p.E3387K 0.30 tolerated(0.53) benign(0.001) TCGA-D3-A8GM-06 16 21042603 21042603 G A DNAH3 Nonsense_Mutation p.Q1735* 0.29 TCGA-D3-A8GM-06 16 21278931 21278931 A G CRYM Missense_Mutation p.L206P 0.19 tolerated(0.22) benign(0.176) TCGA-D3-A8GM-06 16 21278979 21278979 G A CRYM Missense_Mutation p.S190L 0.33 deleterious(0) possibly_damaging(0.875) TCGA-D3-A8GM-06 16 21278980 21278980 A C CRYM Missense_Mutation p.S190A 0.34 deleterious(0.02) possibly_damaging(0.532) TCGA-D3-A8GM-06 16 2130180 2130180 C T TSC2 Nonsense_Mutation p.R1138* 0.26 TCGA-D3-A8GM-06 16 2137898 2137898 C T TSC2 Missense_Mutation p.P1675L 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 21658802 21658802 C T IGSF6 Missense_Mutation p.A27T 0.20 tolerated(0.74) benign(0.011) TCGA-D3-A8GM-06 16 21693112 21693112 C T OTOA Missense_Mutation p.S78F 0.30 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 16 22269008 22269008 C T EEF2K Missense_Mutation p.R316W 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-D3-A8GM-06 16 23080108 23080108 G A USP31 Silent p.S1106S 0.18 TCGA-D3-A8GM-06 16 23080459 23080459 G A USP31 Silent p.I989I 0.30 TCGA-D3-A8GM-06 16 2335459 2335459 G A ABCA3 Missense_Mutation p.P1156L 0.31 deleterious(0) benign(0.314) TCGA-D3-A8GM-06 16 27460111 27460111 C T IL21R Missense_Mutation p.S375F 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 27720094 27720094 C T KIAA0556 Silent p.N486N 0.27 TCGA-D3-A8GM-06 16 28133057 28133057 G A XPO6 Missense_Mutation p.S598F 0.30 deleterious(0) benign(0.429) TCGA-D3-A8GM-06 16 2815469 2815469 C T SRRM2 Missense_Mutation p.P1647L 0.24 unknown(0) TCGA-D3-A8GM-06 16 28187397 28187397 C A XPO6 Missense_Mutation p.W76L 0.08 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 28507303 28507303 C T APOBR Missense_Mutation p.S314L 0.23 deleterious(0.01) possibly_damaging(0.504) TCGA-D3-A8GM-06 16 28603107 28603107 C T CCDC101 3'UTR 0.18 TCGA-D3-A8GM-06 16 28617456 28617456 C T SULT1A1 Missense_Mutation p.M232I 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 16 28618372 28618372 C T SULT1A1 Silent p.K133K 0.22 TCGA-D3-A8GM-06 16 29755633 29755633 A G C16orf54 Missense_Mutation p.W214R 0.14 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-D3-A8GM-06 16 29853250 29853250 C T MVP Missense_Mutation p.P484L 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 16 29996837 29996837 C G TAOK2 Missense_Mutation p.L576V 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-D3-A8GM-06 16 29998980 29998980 C T TAOK2 Silent p.V1129V 0.29 TCGA-D3-A8GM-06 16 30038125 30038125 G A FAM57B Silent p.P83P 0.30 TCGA-D3-A8GM-06 16 30507593 30507593 G A ITGAL Missense_Mutation p.G560E 0.27 deleterious(0.03) benign(0.288) TCGA-D3-A8GM-06 16 30777817 30777817 G - RNF40 Frame_Shift_Del p.E411Rfs*76 0.25 TCGA-D3-A8GM-06 16 30941614 30941614 C T FBXL19 Missense_Mutation p.A357V 0.19 tolerated(0.55) benign(0.016) TCGA-D3-A8GM-06 16 30941615 30941615 C T FBXL19 Silent p.A357A 0.19 TCGA-D3-A8GM-06 16 31095062 31095062 C A PRSS53 3'UTR 0.24 TCGA-D3-A8GM-06 16 31123468 31123468 G A BCKDK Missense_Mutation p.R374Q 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A8GM-06 16 31373393 31373393 C T ITGAX Intron 0.27 TCGA-D3-A8GM-06 16 3139379 3139379 C T ZSCAN10 Missense_Mutation p.G631S 0.26 tolerated(0.11) probably_damaging(1) TCGA-D3-A8GM-06 16 31413505 31413505 T G ITGAD Missense_Mutation p.F166C 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 31426283 31426283 G A ITGAD Missense_Mutation p.V752M 0.31 tolerated(0.3) benign(0.035) TCGA-D3-A8GM-06 16 31434927 31434927 G A ITGAD Silent p.Q1001Q 0.32 TCGA-D3-A8GM-06 16 31477392 31477392 C T ARMC5 Intron 0.41 TCGA-D3-A8GM-06 16 31477716 31477716 C T ARMC5 Missense_Mutation p.P772S 0.30 tolerated(0.06) possibly_damaging(0.857) TCGA-D3-A8GM-06 16 31496236 31496236 G A SLC5A2 Missense_Mutation p.E99K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 16 31501384 31501384 G A C16orf58 3'UTR 0.30 TCGA-D3-A8GM-06 16 3254267 3254267 G A OR1F1 Silent p.S7S 0.20 TCGA-D3-A8GM-06 16 3298939 3298939 G A MEFV Silent p.S442S 0.25 TCGA-D3-A8GM-06 16 3299732 3299732 C T MEFV Missense_Mutation p.G320E 0.17 tolerated(0.06) probably_damaging(0.964) TCGA-D3-A8GM-06 16 3304734 3304734 C - MEFV Frame_Shift_Del p.E112Rfs*7 0.20 TCGA-D3-A8GM-06 16 334923 334923 G A PDIA2 Missense_Mutation p.D196N 0.23 tolerated(0.26) probably_damaging(0.924) TCGA-D3-A8GM-06 16 3658435 3658435 G T SLX4 Silent p.T177T 0.20 TCGA-D3-A8GM-06 16 3788570 3788570 T C CREBBP Missense_Mutation p.K1462E 0.21 unknown(0) TCGA-D3-A8GM-06 16 422686 422686 C A TMEM8A Missense_Mutation p.L648F 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 16 4382336 4382336 G A GLIS2 Missense_Mutation p.A19T 0.17 deleterious(0.03) benign(0.431) TCGA-D3-A8GM-06 16 4410483 4410483 G T CORO7 Silent p.R662R 0.29 TCGA-D3-A8GM-06 16 46714708 46714708 C T VPS35 Silent p.K127K 0.28 TCGA-D3-A8GM-06 16 47531366 47531366 C T PHKB Missense_Mutation p.L45F 0.20 deleterious(0.02) possibly_damaging(0.553) TCGA-D3-A8GM-06 16 4797515 4797515 G A C16orf71 Silent p.K484K 0.19 TCGA-D3-A8GM-06 16 48234328 48234328 G A ABCC11 Silent p.A647A 0.23 TCGA-D3-A8GM-06 16 4847790 4847790 G A ROGDI Silent p.C249C 0.24 TCGA-D3-A8GM-06 16 4925277 4925277 A - UBN1 Frame_Shift_Del p.M958Cfs*7 0.25 TCGA-D3-A8GM-06 16 4927007 4927007 C T UBN1 Missense_Mutation p.H1054Y 0.23 deleterious(0) benign(0.39) TCGA-D3-A8GM-06 16 49430391 49430391 G A C16orf78 Missense_Mutation p.R151H 0.07 tolerated(0.17) benign(0.296) TCGA-D3-A8GM-06 16 4949031 4949031 C T PPL Missense_Mutation p.G287R 0.18 deleterious(0) probably_damaging(0.939) TCGA-D3-A8GM-06 16 50327338 50327338 A G ADCY7 Missense_Mutation p.K254R 0.20 tolerated(0.22) possibly_damaging(0.892) TCGA-D3-A8GM-06 16 51173454 51173454 G A SALL1 Silent p.I893I 0.36 TCGA-D3-A8GM-06 16 51173970 51173970 C T SALL1 Silent p.L721L 0.18 TCGA-D3-A8GM-06 16 51175392 51175392 G A SALL1 Silent p.I247I 0.21 TCGA-D3-A8GM-06 16 53190064 53190064 T C CHD9 Silent p.G21G 0.35 TCGA-D3-A8GM-06 16 53913891 53913891 C T FTO Missense_Mutation p.H371Y 0.28 deleterious(0) probably_damaging(0.92) TCGA-D3-A8GM-06 16 55880582 55880582 C T CES5A Silent p.G532G 0.23 TCGA-D3-A8GM-06 16 56485093 56485093 G A NUDT21 Missense_Mutation p.R8C 0.25 tolerated_low_confidence(0.1) benign(0.446) TCGA-D3-A8GM-06 16 56501903 56501903 T C OGFOD1 Silent p.S291S 0.40 TCGA-D3-A8GM-06 16 56534834 56534834 G A BBS2 Silent p.I443I 0.22 TCGA-D3-A8GM-06 16 56535359 56535359 G A BBS2 Silent p.I377I 0.25 TCGA-D3-A8GM-06 16 56704954 56704954 G A MT1H 3'UTR 0.23 TCGA-D3-A8GM-06 16 57017237 57017237 G A CETP Splice_Site p.X441_splice 0.28 TCGA-D3-A8GM-06 16 57017238 57017238 G A CETP Missense_Mutation p.R441Q 0.29 tolerated(0.21) possibly_damaging(0.783) TCGA-D3-A8GM-06 16 57295834 57295841 AACTTCAT - PLLP Frame_Shift_Del p.M93Vfs*13 0.21 TCGA-D3-A8GM-06 16 57787016 57787016 G A KATNB1 Missense_Mutation p.V295I 0.32 tolerated(0.07) benign(0.025) TCGA-D3-A8GM-06 16 57800822 57800822 G A KIFC3 Missense_Mutation p.R432C 0.17 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GM-06 16 58052888 58052888 C T USB1 Missense_Mutation p.H208Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 16 58565874 58565874 C T CNOT1 Silent p.T2055T 0.23 TCGA-D3-A8GM-06 16 58577785 58577785 G A CNOT1 Missense_Mutation p.P1387L 0.18 deleterious(0.01) benign(0.248) TCGA-D3-A8GM-06 16 601306 601306 C T CAPN15 Missense_Mutation p.L691F 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 61689622 61689622 T G CDH8 Missense_Mutation p.N553T 0.20 deleterious(0) possibly_damaging(0.803) TCGA-D3-A8GM-06 16 61935368 61935368 C T CDH8 Missense_Mutation p.D88N 0.20 tolerated(0.18) benign(0.442) TCGA-D3-A8GM-06 16 62055499 62055499 G A CDH8 5'UTR 0.38 TCGA-D3-A8GM-06 16 64981746 64981746 G A CDH11 Silent p.V717V 0.20 TCGA-D3-A8GM-06 16 64981980 64981980 G A CDH11 Silent p.T639T 0.26 TCGA-D3-A8GM-06 16 64981981 64981981 G A CDH11 Missense_Mutation p.T639I 0.25 deleterious(0.02) benign(0.216) TCGA-D3-A8GM-06 16 66423372 66423372 C T CDH5 Missense_Mutation p.T243I 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GM-06 16 66547656 66547656 A - TK2 Frame_Shift_Del p.F226Sfs*9 0.19 TCGA-D3-A8GM-06 16 66600375 66600375 G A CMTM1 5'UTR 0.32 TCGA-D3-A8GM-06 16 66951561 66951561 G T CDH16 Missense_Mutation p.P38H 0.17 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 16 67262264 67262264 T C TMEM208 Missense_Mutation p.Y37H 0.23 tolerated(0.13) benign(0.124) TCGA-D3-A8GM-06 16 67264585 67264585 C T FHOD1 Missense_Mutation p.R926H 0.27 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GM-06 16 67304668 67304668 G A SLC9A5 Missense_Mutation p.R749Q 0.46 tolerated(0.62) benign(0.097) TCGA-D3-A8GM-06 16 67328944 67328944 G A KCTD19 Silent p.F469F 0.25 TCGA-D3-A8GM-06 16 67671679 67671679 C T CTCF Silent p.P696P 0.21 TCGA-D3-A8GM-06 16 67691506 67691506 G A ACD 3'UTR 0.17 TCGA-D3-A8GM-06 16 68265178 68265178 C T ESRP2 Silent p.V538V 0.39 TCGA-D3-A8GM-06 16 68961757 68961757 C T TANGO6 Missense_Mutation p.P805L 0.21 tolerated(0.05) benign(0.024) TCGA-D3-A8GM-06 16 69154309 69154309 G T CHTF8 Missense_Mutation p.P8H 0.27 tolerated_low_confidence(0.12) unknown(0) TCGA-D3-A8GM-06 16 700304 700304 G A WDR90 Silent p.K110K 0.25 TCGA-D3-A8GM-06 16 70546314 70546314 A C COG4 Missense_Mutation p.L189R 0.24 deleterious(0) probably_damaging(0.924) TCGA-D3-A8GM-06 16 70820133 70820133 G A VAC14 Silent p.S80S 0.20 TCGA-D3-A8GM-06 16 70841718 70841718 T C HYDIN Missense_Mutation p.N5044S 0.10 possibly_damaging(0.801) TCGA-D3-A8GM-06 16 70884555 70884555 G A HYDIN Silent p.F4149F 0.21 TCGA-D3-A8GM-06 16 70942747 70942747 G A HYDIN Silent p.T2674T 0.29 TCGA-D3-A8GM-06 16 71212912 71212912 G A HYDIN Silent p.P100P 0.16 TCGA-D3-A8GM-06 16 71416660 71416660 C T CALB2 Silent p.I127I 0.33 TCGA-D3-A8GM-06 16 71423863 71423863 C T CALB2 3'UTR 0.29 TCGA-D3-A8GM-06 16 71610233 71610233 G A TAT Missense_Mutation p.S29F 0.20 tolerated(0.72) benign(0.192) TCGA-D3-A8GM-06 16 71668667 71668667 G A MARVELD3 Intron 0.24 TCGA-D3-A8GM-06 16 720896 720896 C T RHOT2 Missense_Mutation p.S215F 0.21 tolerated(0.7) benign(0.092) TCGA-D3-A8GM-06 16 72993785 72993785 G A ZFHX3 Missense_Mutation p.S87F 0.21 probably_damaging(0.962) TCGA-D3-A8GM-06 16 74447572 74447572 G A CLEC18B Silent p.L153L 0.11 TCGA-D3-A8GM-06 16 74452061 74452061 C T CLEC18B Missense_Mutation p.A118T 0.54 tolerated(0.45) benign(0.021) TCGA-D3-A8GM-06 16 74455118 74455118 G A CLEC18B Silent p.L17L 0.20 TCGA-D3-A8GM-06 16 74525031 74525031 C T GLG1 Silent p.E439E 0.19 TCGA-D3-A8GM-06 16 74657865 74657865 G T RFWD3 Silent p.T762T 0.19 TCGA-D3-A8GM-06 16 74657866 74657866 G A RFWD3 Missense_Mutation p.T762I 0.19 deleterious(0.04) benign(0.059) TCGA-D3-A8GM-06 16 74752910 74752910 G A FA2H Silent p.F254F 0.13 TCGA-D3-A8GM-06 16 74943478 74943478 C T WDR59 Silent p.R521R 0.29 TCGA-D3-A8GM-06 16 75268973 75268973 G A BCAR1 Silent p.T654T 0.17 TCGA-D3-A8GM-06 16 75512818 75512818 G A CHST6 Silent p.I303I 0.20 TCGA-D3-A8GM-06 16 75513427 75513427 G A CHST6 Silent p.F100F 0.36 TCGA-D3-A8GM-06 16 77326974 77326974 T C ADAMTS18 Missense_Mutation p.E1063G 0.28 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GM-06 16 77401520 77401520 G A ADAMTS18 Missense_Mutation p.P199L 0.19 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 16 78056536 78056536 G A CLEC3A Missense_Mutation p.G14R 0.10 tolerated(0.1) benign(0.281) TCGA-D3-A8GM-06 16 78466547 78466547 G A WWOX Silent p.S318S 0.21 TCGA-D3-A8GM-06 16 79632936 79632936 C T MAF Silent p.R288R 0.38 TCGA-D3-A8GM-06 16 80583398 80583398 A G DYNLRB2 Missense_Mutation p.T33A 0.13 deleterious(0.02) benign(0.339) TCGA-D3-A8GM-06 16 81076999 81076999 C T ATMIN Missense_Mutation p.P299L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 16 81077000 81077000 C T ATMIN Silent p.P299P 0.27 TCGA-D3-A8GM-06 16 81193243 81193243 C T PKD1L2 RNA 0.25 TCGA-D3-A8GM-06 16 81944134 81944134 C T PLCG2 Silent p.G581G 0.20 TCGA-D3-A8GM-06 16 81953242 81953242 C T PLCG2 Silent p.T736T 0.23 TCGA-D3-A8GM-06 16 83636187 83636187 C T CDH13 Silent p.F410F 0.28 TCGA-D3-A8GM-06 16 83813691 83813691 T G CDH13 Missense_Mutation p.S647R 0.26 tolerated(0.14) benign(0.004) TCGA-D3-A8GM-06 16 84497354 84497354 G C ATP2C2 3'UTR 0.23 TCGA-D3-A8GM-06 16 85813389 85813389 G A EMC8 Silent p.F186F 0.16 TCGA-D3-A8GM-06 16 85942616 85942616 G A IRF8 Silent p.G65G 0.25 TCGA-D3-A8GM-06 16 85952405 85952405 C T IRF8 Silent p.F328F 0.20 TCGA-D3-A8GM-06 16 87443839 87443839 C T ZCCHC14 3'UTR 0.21 TCGA-D3-A8GM-06 16 87443840 87443840 C A ZCCHC14 3'UTR 0.20 TCGA-D3-A8GM-06 16 87921680 87921680 A T CA5A 3'UTR 0.39 TCGA-D3-A8GM-06 16 8858680 8858680 G A ABAT Nonsense_Mutation p.W178* 0.19 TCGA-D3-A8GM-06 16 8862088 8862088 G A ABAT Missense_Mutation p.M214I 0.27 tolerated(0.2) benign(0.003) TCGA-D3-A8GM-06 16 88689707 88689707 C T ZC3H18 Missense_Mutation p.S583F 0.29 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 16 88694172 88694172 C T ZC3H18 Nonsense_Mutation p.Q751* 0.20 TCGA-D3-A8GM-06 16 8870285 8870285 G A ABAT Missense_Mutation p.D403N 0.21 tolerated(1) benign(0.005) TCGA-D3-A8GM-06 16 8870315 8870315 A G ABAT Missense_Mutation p.K413E 0.21 tolerated(0.34) benign(0.002) TCGA-D3-A8GM-06 16 88713176 88713176 C T CYBA Missense_Mutation p.V92I 0.27 tolerated(0.76) benign(0.01) TCGA-D3-A8GM-06 16 89347679 89347679 G A ANKRD11 Silent p.S1757S 0.18 TCGA-D3-A8GM-06 16 89352512 89352512 G A ANKRD11 Missense_Mutation p.S276F 0.22 probably_damaging(0.99) TCGA-D3-A8GM-06 16 89775661 89775661 C T VPS9D1 Missense_Mutation p.C524Y 0.32 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GM-06 16 90161574 90161574 G A TUBB8P7 RNA 0.21 TCGA-D3-A8GM-06 16 90161755 90161755 T - TUBB8P7 RNA 0.10 TCGA-D3-A8GM-06 16 9862783 9862783 G A GRIN2A Silent p.L840L 0.16 TCGA-D3-A8GM-06 16 9862798 9862798 G A GRIN2A Silent p.F835F 0.16 TCGA-D3-A8GM-06 16 9923318 9923318 C T GRIN2A Missense_Mutation p.E657K 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 16 9927980 9927980 T A GRIN2A Missense_Mutation p.N587Y 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-D3-A8GM-06 16 9943743 9943743 C T GRIN2A Missense_Mutation p.E400K 0.22 tolerated(0.53) benign(0.345) TCGA-D3-A8GM-06 17 10215993 10215993 G A MYH13 Silent p.T1421T 0.32 TCGA-D3-A8GM-06 17 10219259 10219259 G A MYH13 Silent p.I1274I 0.40 TCGA-D3-A8GM-06 17 10253946 10253946 G A MYH13 Silent p.A357A 0.23 TCGA-D3-A8GM-06 17 10267756 10267756 G A MYH13 Missense_Mutation p.P31L 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-D3-A8GM-06 17 10297620 10297620 G A MYH8 Silent p.I1704I 0.14 TCGA-D3-A8GM-06 17 10302926 10302926 C T MYH8 Missense_Mutation p.E1266K 0.39 tolerated(0.29) benign(0.155) TCGA-D3-A8GM-06 17 10348614 10348614 C T MYH4 Missense_Mutation p.M1745I 0.20 tolerated(0.1) benign(0.021) TCGA-D3-A8GM-06 17 10350390 10350390 C T MYH4 Silent p.R1703R 0.19 TCGA-D3-A8GM-06 17 10356991 10356991 A G MYH4 Missense_Mutation p.V968A 0.22 tolerated(0.17) benign(0.02) TCGA-D3-A8GM-06 17 10366440 10366440 G A MYH4 Nonsense_Mutation p.Q291* 0.14 TCGA-D3-A8GM-06 17 10369996 10369996 C T MYH4 Missense_Mutation p.E23K 0.44 deleterious(0.03) benign(0.248) TCGA-D3-A8GM-06 17 10401063 10401063 C T MYH1 Silent p.R1451R 0.50 TCGA-D3-A8GM-06 17 10401201 10401201 C T MYH1 Silent p.E1405E 0.17 TCGA-D3-A8GM-06 17 10404769 10404769 G A MYH1 Silent p.S1132S 0.40 TCGA-D3-A8GM-06 17 10406449 10406449 G A MYH1 Silent p.I936I 0.16 TCGA-D3-A8GM-06 17 10408240 10408240 A T MYH1 Missense_Mutation p.F860I 0.37 deleterious(0.02) possibly_damaging(0.694) TCGA-D3-A8GM-06 17 10424530 10424530 G A MYH2 3'UTR 0.23 TCGA-D3-A8GM-06 17 10427918 10427918 C T MYH2 Silent p.V1680V 0.30 TCGA-D3-A8GM-06 17 10432219 10432219 G A MYH2 Nonsense_Mutation p.Q1178* 0.40 TCGA-D3-A8GM-06 17 10443319 10443320 - C MYH2 Frame_Shift_Ins p.A358Gfs*11 0.29 TCGA-D3-A8GM-06 17 10451065 10451065 C T MYH2 Missense_Mutation p.G58E 0.12 deleterious(0.04) benign(0.306) TCGA-D3-A8GM-06 17 11556187 11556187 G A DNAH9 Nonsense_Mutation p.W821* 0.32 TCGA-D3-A8GM-06 17 11593628 11593628 G A DNAH9 Missense_Mutation p.G1497S 0.20 benign(0.004) TCGA-D3-A8GM-06 17 11604474 11604474 G A DNAH9 Missense_Mutation p.M1687I 0.36 benign(0.223) TCGA-D3-A8GM-06 17 11651067 11651067 A C DNAH9 Silent p.T2198T 0.23 TCGA-D3-A8GM-06 17 11687016 11687016 C T DNAH9 Missense_Mutation p.S2591F 0.38 possibly_damaging(0.897) TCGA-D3-A8GM-06 17 11696904 11696904 C T DNAH9 Missense_Mutation p.R2716W 0.31 benign(0.033) TCGA-D3-A8GM-06 17 12647732 12647732 G A MYOCD Missense_Mutation p.G317E 0.44 deleterious(0.03) benign(0.16) TCGA-D3-A8GM-06 17 1265222 1265222 G A YWHAE Silent p.G115G 0.41 TCGA-D3-A8GM-06 17 12661508 12661508 C T MYOCD Missense_Mutation p.S770F 0.38 deleterious(0.04) probably_damaging(0.976) TCGA-D3-A8GM-06 17 12893453 12893453 G A ARHGAP44 Missense_Mutation p.D808N 0.31 deleterious_low_confidence(0.01) benign(0.054) TCGA-D3-A8GM-06 17 12893459 12893459 G A ARHGAP44 Missense_Mutation p.E810K 0.29 deleterious_low_confidence(0) benign(0.078) TCGA-D3-A8GM-06 17 1326770 1326770 A G CRK 3'UTR 0.17 TCGA-D3-A8GM-06 17 15640807 15640807 G A TBC1D26 Silent p.E56E 0.39 TCGA-D3-A8GM-06 17 1577754 1577754 C T PRPF8 Missense_Mutation p.R1094H 0.39 deleterious(0) possibly_damaging(0.483) TCGA-D3-A8GM-06 17 16335282 16335282 C T TRPV2 Silent p.L553L 0.18 TCGA-D3-A8GM-06 17 16455129 16455129 G A ZNF287 3'UTR 0.26 TCGA-D3-A8GM-06 17 16455475 16455475 C T ZNF287 Missense_Mutation p.A661T 0.46 tolerated(0.51) probably_damaging(0.989) TCGA-D3-A8GM-06 17 1650610 1650610 C T SERPINF2 Silent p.P173P 0.50 TCGA-D3-A8GM-06 17 1657747 1657747 C T SERPINF2 Silent p.R465R 0.21 TCGA-D3-A8GM-06 17 16612832 16612832 A G CCDC144A Silent p.S487S 0.35 TCGA-D3-A8GM-06 17 1673340 1673340 G A SERPINF1 Silent p.S93S 0.23 TCGA-D3-A8GM-06 17 17699961 17699961 C T RAI1 Silent p.P1233P 0.25 TCGA-D3-A8GM-06 17 18010530 18010530 C T DRG2 Silent p.D357D 0.39 TCGA-D3-A8GM-06 17 18022196 18022196 C T MYO15A Missense_Mutation p.R28W 0.10 probably_damaging(0.992) TCGA-D3-A8GM-06 17 18022808 18022808 C T MYO15A Silent p.L232L 0.26 TCGA-D3-A8GM-06 17 18060493 18060493 C T MYO15A Missense_Mutation p.R2913C 0.28 unknown(0) TCGA-D3-A8GM-06 17 18834002 18834002 A C PRPSAP2 Missense_Mutation p.L367F 0.43 deleterious(0.01) benign(0.252) TCGA-D3-A8GM-06 17 18874765 18874765 C T FAM83G Silent p.S793S 0.34 TCGA-D3-A8GM-06 17 19091376 19091376 T G SNORD3A RNA 0.05 TCGA-D3-A8GM-06 17 19213208 19213208 G A EPN2 Silent p.P259P 0.22 TCGA-D3-A8GM-06 17 19283189 19283189 T C MAPK7 Silent p.F109F 0.35 TCGA-D3-A8GM-06 17 19287929 19287929 C T MFAP4 Missense_Mutation p.G229E 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 17 19459358 19459358 G A SLC47A1 Missense_Mutation p.A302T 0.18 tolerated(0.08) benign(0.26) TCGA-D3-A8GM-06 17 19646773 19646773 C T ALDH3A1 Missense_Mutation p.E56K 0.26 tolerated(0.93) benign(0.007) TCGA-D3-A8GM-06 17 19683849 19683849 C T ULK2 Missense_Mutation p.R951K 0.36 tolerated(0.47) probably_damaging(0.997) TCGA-D3-A8GM-06 17 20796747 20796747 C T CCDC144NL Missense_Mutation p.E125K 0.36 tolerated_low_confidence(0.1) benign(0.351) TCGA-D3-A8GM-06 17 20799011 20799011 T G CCDC144NL Missense_Mutation p.D108A 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-D3-A8GM-06 17 20919180 20919180 C T USP22 Silent p.P241P 0.24 TCGA-D3-A8GM-06 17 21319053 21319053 C T KCNJ12 Silent p.A133A 0.22 TCGA-D3-A8GM-06 17 21477572 21477572 C T AC138710.1 5'Flank 0.36 TCGA-D3-A8GM-06 17 21731576 21731576 G A UBBP4 Silent p.S217S 0.34 TCGA-D3-A8GM-06 17 2227356 2227356 A - SRR 3'UTR 0.37 TCGA-D3-A8GM-06 17 2595707 2595707 G A CLUH Silent p.L1131L 0.38 TCGA-D3-A8GM-06 17 26656289 26656289 C T IFT20 Missense_Mutation p.R102Q 0.28 tolerated(0.32) benign(0.127) TCGA-D3-A8GM-06 17 26677563 26677563 G A POLDIP2 Silent p.N270N 0.23 TCGA-D3-A8GM-06 17 26817804 26817804 G A SLC13A2 Missense_Mutation p.A201T 0.23 deleterious(0.02) possibly_damaging(0.627) TCGA-D3-A8GM-06 17 26881319 26881319 C A PIGS Missense_Mutation p.M529I 0.27 tolerated(0.25) benign(0.086) TCGA-D3-A8GM-06 17 27182306 27182306 C A ERAL1 Missense_Mutation p.P85H 0.25 tolerated(0.2) benign(0) TCGA-D3-A8GM-06 17 27309018 27309018 G A SEZ6 Missense_Mutation p.A32V 0.31 deleterious_low_confidence(0.02) benign(0.008) TCGA-D3-A8GM-06 17 27903134 27903134 C T GIT1 Missense_Mutation p.A552T 0.36 tolerated(0.26) benign(0.041) TCGA-D3-A8GM-06 17 28296166 28296166 T C EFCAB5 Missense_Mutation p.V183A 0.36 deleterious(0) benign(0.423) TCGA-D3-A8GM-06 17 28386619 28386619 G A EFCAB5 Silent p.Q879Q 0.33 TCGA-D3-A8GM-06 17 28656366 28656366 A G TMIGD1 Silent p.C88C 0.36 TCGA-D3-A8GM-06 17 29097003 29097003 G A SUZ12P RNA 0.42 TCGA-D3-A8GM-06 17 29171023 29171023 A - ATAD5 Frame_Shift_Del p.K780Nfs*13 0.11 TCGA-D3-A8GM-06 17 29231408 29231408 G T TEFM Silent p.P57P 0.34 TCGA-D3-A8GM-06 17 29560081 29560081 C T NF1 Silent p.I1186I 0.30 TCGA-D3-A8GM-06 17 29855500 29855500 T A RAB11FIP4 Missense_Mutation p.M478K 0.19 deleterious(0) benign(0.397) TCGA-D3-A8GM-06 17 30322685 30322685 C T SUZ12 Silent p.F566F 0.33 TCGA-D3-A8GM-06 17 30361966 30361966 C T LRRC37B Missense_Mutation p.P672S 0.20 tolerated(0.95) possibly_damaging(0.857) TCGA-D3-A8GM-06 17 3101238 3101238 C T OR1A2 Silent p.I142I 0.19 TCGA-D3-A8GM-06 17 3101421 3101421 C T OR1A2 Silent p.V203V 0.36 TCGA-D3-A8GM-06 17 31323991 31323991 C T SPACA3 Silent p.V158V 0.30 TCGA-D3-A8GM-06 17 3181864 3181864 G A OR3A2 Silent p.F122F 0.23 TCGA-D3-A8GM-06 17 33464020 33464020 G C NLE1 Missense_Mutation p.D276E 0.38 tolerated(0.18) benign(0.068) TCGA-D3-A8GM-06 17 33586173 33586173 C T SLFN5 Missense_Mutation p.P155L 0.39 tolerated(0.05) benign(0.006) TCGA-D3-A8GM-06 17 33586192 33586192 T G SLFN5 Missense_Mutation p.S161R 0.36 tolerated(0.57) benign(0.002) TCGA-D3-A8GM-06 17 33690245 33690245 G A SLFN11 Silent p.F194F 0.30 TCGA-D3-A8GM-06 17 34235419 34235419 C T AC015849.16 RNA 0.41 TCGA-D3-A8GM-06 17 34235420 34235420 C T AC015849.16 RNA 0.39 TCGA-D3-A8GM-06 17 35295567 35295567 C T LHX1 Missense_Mutation p.H25Y 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 3567997 3567997 G A TAX1BP3 Silent p.P45P 0.25 TCGA-D3-A8GM-06 17 36486892 36486892 C T GPR179 Missense_Mutation p.A854T 0.34 tolerated(0.28) possibly_damaging(0.77) TCGA-D3-A8GM-06 17 36489822 36489822 G A GPR179 Silent p.I628I 0.26 TCGA-D3-A8GM-06 17 36520703 36520703 C T SOCS7 Missense_Mutation p.P308S 0.24 deleterious_low_confidence(0.04) benign(0.326) TCGA-D3-A8GM-06 17 36707486 36707486 G A SRCIN1 Missense_Mutation p.P956L 0.43 tolerated(0.08) benign(0.108) TCGA-D3-A8GM-06 17 37119242 37119242 G A FBXO47 Missense_Mutation p.P13S 0.28 deleterious(0.01) possibly_damaging(0.859) TCGA-D3-A8GM-06 17 37188503 37188503 G A LRRC37A11P RNA 0.34 TCGA-D3-A8GM-06 17 37223925 37223925 C T PLXDC1 3'UTR 0.62 TCGA-D3-A8GM-06 17 37243936 37243936 G A PLXDC1 Silent p.I277I 0.45 TCGA-D3-A8GM-06 17 37564673 37564673 C T MED1 Silent p.T1267T 0.28 TCGA-D3-A8GM-06 17 37687289 37687289 C T CDK12 Missense_Mutation p.P1398L 0.37 probably_damaging(0.997) TCGA-D3-A8GM-06 17 37814968 37814968 C T STARD3 Intron 0.31 TCGA-D3-A8GM-06 17 37815058 37815058 C T STARD3 Missense_Mutation p.P211S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 17 37863355 37863355 C T ERBB2 Silent p.L62L 0.40 TCGA-D3-A8GM-06 17 37898526 37898526 C T GRB7 Missense_Mutation p.S14F 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GM-06 17 38079406 38079406 G A ORMDL3 Silent p.F95F 0.41 TCGA-D3-A8GM-06 17 3808643 3808643 C T P2RX1 Silent p.E52E 0.17 TCGA-D3-A8GM-06 17 38133173 38133173 G A GSDMA Silent p.T400T 0.30 TCGA-D3-A8GM-06 17 38251727 38251727 G A NR1D1 Silent p.P406P 0.29 TCGA-D3-A8GM-06 17 3833617 3833617 C T ATP2A3 Missense_Mutation p.E908K 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 38512295 38512295 C T RARA Silent p.I402I 0.33 TCGA-D3-A8GM-06 17 38641238 38641238 G A TNS4 Missense_Mutation p.P437L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 38813728 38813728 C T KRT222 Missense_Mutation p.E179K 0.28 tolerated(0.15) benign(0.027) TCGA-D3-A8GM-06 17 38928152 38928152 G T KRT26 Missense_Mutation p.L72I 0.27 tolerated(0.33) benign(0.017) TCGA-D3-A8GM-06 17 38975353 38975353 G A KRT10 Silent p.S478S 0.30 TCGA-D3-A8GM-06 17 38976402 38976402 C T KRT10 Missense_Mutation p.D352N 0.35 tolerated(0.24) benign(0.109) TCGA-D3-A8GM-06 17 38991580 38991580 C T TMEM99 3'UTR 0.29 TCGA-D3-A8GM-06 17 39279870 39279870 G A KRTAP4-12 Missense_Mutation p.P169S 0.24 tolerated(0.19) unknown(0) TCGA-D3-A8GM-06 17 3954330 3954330 G A ZZEF1 Missense_Mutation p.P1870S 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-D3-A8GM-06 17 39552749 39552749 G A KRT31 Silent p.L171L 0.28 TCGA-D3-A8GM-06 17 39577681 39577681 C T KRT37 Silent p.V393V 0.38 TCGA-D3-A8GM-06 17 39643256 39643256 C T KRT36 Missense_Mutation p.R385Q 0.29 tolerated(0.05) probably_damaging(0.998) TCGA-D3-A8GM-06 17 39643870 39643870 C T KRT36 Silent p.V273V 0.27 TCGA-D3-A8GM-06 17 39645987 39645987 C T KRT36 Missense_Mutation p.G44S 0.11 tolerated(0.36) possibly_damaging(0.454) TCGA-D3-A8GM-06 17 39646023 39646023 G A KRT36 Missense_Mutation p.R32C 0.31 tolerated(0.21) possibly_damaging(0.609) TCGA-D3-A8GM-06 17 39670423 39670423 C T KRT15 Intron 0.34 TCGA-D3-A8GM-06 17 39766144 39766144 G T KRT16 3'UTR 0.47 TCGA-D3-A8GM-06 17 39777252 39777252 G A KRT17 Missense_Mutation p.A309V 0.36 deleterious(0) possibly_damaging(0.491) TCGA-D3-A8GM-06 17 39780679 39780679 G A KRT17 Missense_Mutation p.S28F 0.34 deleterious(0.02) possibly_damaging(0.831) TCGA-D3-A8GM-06 17 39872081 39872081 G A GAST Missense_Mutation p.G88E 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GM-06 17 40265544 40265544 G A KAT2A 3'UTR 0.42 TCGA-D3-A8GM-06 17 40272819 40272819 C T KAT2A Nonsense_Mutation p.W123* 0.34 TCGA-D3-A8GM-06 17 40635057 40635057 T C ATP6V0A1 Missense_Mutation p.F247L 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GM-06 17 40925451 40925451 G A VPS25 5'Flank 0.34 TCGA-D3-A8GM-06 17 40996780 40996780 C T AOC2 Missense_Mutation p.P46L 0.33 tolerated(0.07) benign(0.027) TCGA-D3-A8GM-06 17 40997688 40997688 C T AOC2 Nonsense_Mutation p.Q349* 0.35 TCGA-D3-A8GM-06 17 41001235 41001235 C T AOC2 Missense_Mutation p.S574F 0.26 tolerated(0.4) benign(0.013) TCGA-D3-A8GM-06 17 41004279 41004279 C T AOC3 Missense_Mutation p.P307S 0.34 tolerated(0.17) benign(0.011) TCGA-D3-A8GM-06 17 41062990 41062990 G A G6PC Silent p.K207K 0.38 TCGA-D3-A8GM-06 17 41102734 41102734 A T AARSD1 Missense_Mutation p.V372D 0.31 deleterious(0) benign(0.206) TCGA-D3-A8GM-06 17 4113187 4113187 G A ANKFY1 Nonsense_Mutation p.Q214* 0.19 TCGA-D3-A8GM-06 17 41835925 41835925 C T SOST Missense_Mutation p.G62E 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 17 41898415 41898415 G A MPP3 Silent p.R232R 0.33 TCGA-D3-A8GM-06 17 42018896 42018896 G A PPY Missense_Mutation p.P43S 0.29 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 17 42083512 42083512 C T NAGS Silent p.S274S 0.14 TCGA-D3-A8GM-06 17 42230098 42230098 C T C17orf53 Missense_Mutation p.P468S 0.35 deleterious(0.02) benign(0.167) TCGA-D3-A8GM-06 17 42426907 42426907 C T GRN Silent p.C84C 0.12 TCGA-D3-A8GM-06 17 42476863 42476863 G A GPATCH8 Missense_Mutation p.S861F 0.35 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 17 42552196 42552196 C T GPATCH8 Splice_Site p.X40_splice 0.34 TCGA-D3-A8GM-06 17 42744736 42744736 A G C17orf104 Missense_Mutation p.N486S 0.14 tolerated(0.59) benign(0.009) TCGA-D3-A8GM-06 17 42930681 42930681 G A EFTUD2 Silent p.T848T 0.31 TCGA-D3-A8GM-06 17 42936477 42936477 G A EFTUD2 Missense_Mutation p.R645W 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 43227190 43227190 T C HEXIM1 Silent p.D211D 0.11 TCGA-D3-A8GM-06 17 43545771 43545771 A G PLEKHM1 Missense_Mutation p.V371A 0.31 tolerated(0.77) benign(0) TCGA-D3-A8GM-06 17 43580683 43580683 A T LRRC37A4P 3'Flank 0.30 TCGA-D3-A8GM-06 17 43907492 43907492 G A CRHR1 Nonsense_Mutation p.W185* 0.26 TCGA-D3-A8GM-06 17 43907493 43907493 G A CRHR1 Nonsense_Mutation p.W185* 0.26 TCGA-D3-A8GM-06 17 4500472 4500472 G A SMTNL2 Silent p.V371V 0.43 TCGA-D3-A8GM-06 17 45481375 45481375 G A EFCAB13 Missense_Mutation p.D717N 0.33 tolerated(0.19) benign(0.007) TCGA-D3-A8GM-06 17 45681384 45681384 G A NPEPPS Missense_Mutation p.R615Q 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A8GM-06 17 4575848 4575848 G A PELP1 Missense_Mutation p.P813L 0.42 unknown(0) TCGA-D3-A8GM-06 17 45897720 45897720 C T OSBPL7 5'UTR 0.27 TCGA-D3-A8GM-06 17 45916907 45916907 C T SCRN2 Silent p.A153A 0.34 TCGA-D3-A8GM-06 17 4619781 4619781 G A ARRB2 Missense_Mutation p.D79N 0.17 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 17 46691766 46691766 C T HOXB8 Missense_Mutation p.D101N 0.39 tolerated(0.17) benign(0.094) TCGA-D3-A8GM-06 17 46691915 46691915 G A HOXB8 Missense_Mutation p.P51L 0.38 deleterious(0.05) benign(0.121) TCGA-D3-A8GM-06 17 4675227 4675227 G A TM4SF5 Missense_Mutation p.G4R 0.47 tolerated(0.07) possibly_damaging(0.811) TCGA-D3-A8GM-06 17 4685903 4685903 G A TM4SF5 Missense_Mutation p.G122S 0.46 tolerated(0.2) benign(0.099) TCGA-D3-A8GM-06 17 46973152 46973152 G A ATP5G1 3'UTR 0.18 TCGA-D3-A8GM-06 17 47004384 47004384 G T UBE2Z Missense_Mutation p.G318V 0.47 tolerated(0.28) benign(0.008) TCGA-D3-A8GM-06 17 47781525 47781525 G A SLC35B1 Nonsense_Mutation p.Q198* 0.38 TCGA-D3-A8GM-06 17 48263204 48263204 C T COL1A1 Missense_Mutation p.E1395K 0.35 unknown(0) TCGA-D3-A8GM-06 17 4836733 4836733 G A GP1BA Silent p.K278K 0.36 TCGA-D3-A8GM-06 17 4842408 4842408 G A SLC25A11 Silent p.F65F 0.41 TCGA-D3-A8GM-06 17 48606174 48606174 G A MYCBPAP Silent p.K885K 0.39 TCGA-D3-A8GM-06 17 48652921 48652921 G A CACNA1G Missense_Mutation p.M386I 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 17 48678523 48678523 C T CACNA1G Silent p.D1301D 0.15 TCGA-D3-A8GM-06 17 48678524 48678524 C T CACNA1G Missense_Mutation p.P1302S 0.15 deleterious(0.04) probably_damaging(0.931) TCGA-D3-A8GM-06 17 48940323 48940323 C T TOB1 3'UTR 0.14 TCGA-D3-A8GM-06 17 49075846 49075846 G A SPAG9 Silent p.L599L 0.27 TCGA-D3-A8GM-06 17 4995470 4995470 C T ZFP3 Missense_Mutation p.P224L 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 5012975 5012975 T C ZNF232 Missense_Mutation p.H71R 0.45 tolerated(0.53) benign(0.004) TCGA-D3-A8GM-06 17 50149738 50149738 G A CA10 Missense_Mutation p.P26L 0.38 deleterious(0.01) benign(0.039) TCGA-D3-A8GM-06 17 51900696 51900696 C T KIF2B Missense_Mutation p.A101V 0.08 tolerated(0.19) benign(0.003) TCGA-D3-A8GM-06 17 51900899 51900899 G A KIF2B Missense_Mutation p.E169K 0.38 deleterious(0.04) benign(0.26) TCGA-D3-A8GM-06 17 51902216 51902216 G A KIF2B Missense_Mutation p.D608N 0.33 tolerated(0.24) benign(0.004) TCGA-D3-A8GM-06 17 51902297 51902297 G A KIF2B Missense_Mutation p.D635N 0.26 deleterious(0) possibly_damaging(0.642) TCGA-D3-A8GM-06 17 5424854 5424854 G A NLRP1 Missense_Mutation p.S1258F 0.21 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GM-06 17 54671610 54671610 T C NOG Missense_Mutation p.V9A 0.30 tolerated(0.09) benign(0.098) TCGA-D3-A8GM-06 17 54872446 54872446 C T C17orf67 Silent p.R84R 0.29 TCGA-D3-A8GM-06 17 56247607 56247607 C T OR4D2 Silent p.F197F 0.31 TCGA-D3-A8GM-06 17 56247871 56247871 G A OR4D2 Missense_Mutation p.M285I 0.33 tolerated(0.4) benign(0.008) TCGA-D3-A8GM-06 17 56276913 56276913 G A EPX Missense_Mutation p.R432Q 0.32 deleterious(0.01) possibly_damaging(0.523) TCGA-D3-A8GM-06 17 56327853 56327853 C T LPO Silent p.F217F 0.35 TCGA-D3-A8GM-06 17 56565441 56565441 G A HSF5 Silent p.A65A 0.40 TCGA-D3-A8GM-06 17 57033105 57033105 C T PPM1E Missense_Mutation p.T187M 0.31 deleterious(0.03) benign(0.07) TCGA-D3-A8GM-06 17 57119253 57119253 T C TRIM37 Silent p.G558G 0.09 TCGA-D3-A8GM-06 17 57288052 57288052 C T SMG8 Missense_Mutation p.H214Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 17 57656916 57656916 C T DHX40 Missense_Mutation p.S386L 0.28 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 17 58506758 58506758 C T C17orf64 Silent p.S155S 0.31 TCGA-D3-A8GM-06 17 59557499 59557499 C T TBX4 Silent p.I280I 0.37 TCGA-D3-A8GM-06 17 59760899 59760899 G A BRIP1 Missense_Mutation p.L1170F 0.31 tolerated_low_confidence(0.15) benign(0.117) TCGA-D3-A8GM-06 17 59984806 59984806 G A INTS2 Missense_Mutation p.R390C 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 17 60061603 60061603 G A MED13 Silent p.Y939Y 0.28 TCGA-D3-A8GM-06 17 60348763 60348763 G A TBC1D3P2 RNA 0.27 TCGA-D3-A8GM-06 17 60629661 60629661 A G TLK2 Splice_Site p.X178_splice 0.20 TCGA-D3-A8GM-06 17 60813327 60813327 C T MARCH10 Silent p.K634K 0.25 TCGA-D3-A8GM-06 17 61391760 61391760 C A TANC2 Missense_Mutation p.P317T 0.24 deleterious(0.05) benign(0.298) TCGA-D3-A8GM-06 17 61391761 61391761 C T TANC2 Missense_Mutation p.P317L 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-D3-A8GM-06 17 61559851 61559851 G A ACE Silent p.T381T 0.28 TCGA-D3-A8GM-06 17 61621669 61621669 G A KCNH6 Missense_Mutation p.E801K 0.29 tolerated_low_confidence(0.26) benign(0) TCGA-D3-A8GM-06 17 61685219 61685219 C A TACO1 Missense_Mutation p.L251M 0.24 tolerated(0.13) possibly_damaging(0.588) TCGA-D3-A8GM-06 17 61780954 61780954 G A STRADA 3'UTR 0.25 TCGA-D3-A8GM-06 17 61987291 61987291 G A CSHL1 Intron 0.41 TCGA-D3-A8GM-06 17 62006512 62006512 C T CD79B 3'UTR 0.23 TCGA-D3-A8GM-06 17 62036696 62036696 C T SCN4A Missense_Mutation p.V650I 0.36 deleterious(0.01) benign(0.176) TCGA-D3-A8GM-06 17 62157082 62157082 G A ERN1 Silent p.L74L 0.40 TCGA-D3-A8GM-06 17 62559045 62559045 C A SMURF2 Silent p.V352V 0.17 TCGA-D3-A8GM-06 17 62796648 62796648 G A PLEKHM1P RNA 0.27 TCGA-D3-A8GM-06 17 62893377 62893377 C T LRRC37A3 5'UTR 0.12 TCGA-D3-A8GM-06 17 63206616 63206616 C T RGS9 Missense_Mutation p.P434S 0.34 tolerated(0.05) benign(0.129) TCGA-D3-A8GM-06 17 6386981 6386981 G A PITPNM3 Missense_Mutation p.S148F 0.52 deleterious(0) benign(0.372) TCGA-D3-A8GM-06 17 65733238 65733238 A T NOL11 Nonsense_Mutation p.K399* 0.33 TCGA-D3-A8GM-06 17 65942389 65942389 A G BPTF Missense_Mutation p.K2522R 0.38 probably_damaging(0.979) TCGA-D3-A8GM-06 17 66914321 66914321 G A ABCA8 Silent p.F598F 0.31 TCGA-D3-A8GM-06 17 66987064 66987064 G A ABCA9 Missense_Mutation p.P1251S 0.21 deleterious(0.02) benign(0.191) TCGA-D3-A8GM-06 17 67079012 67079012 A C ABCA6 Splice_Site p.X1539_splice 0.36 TCGA-D3-A8GM-06 17 67092408 67092408 A T ABCA6 Missense_Mutation p.S1127R 0.12 tolerated(0.2) possibly_damaging(0.776) TCGA-D3-A8GM-06 17 6719219 6719219 G A TEKT1 Missense_Mutation p.A140V 0.34 tolerated(0.85) benign(0.002) TCGA-D3-A8GM-06 17 67516455 67516455 T C MAP2K6 Silent p.D137D 0.38 TCGA-D3-A8GM-06 17 67532279 67532279 G C MAP2K6 Missense_Mutation p.R302P 0.29 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 17 68172013 68172013 C T KCNJ2 Missense_Mutation p.P278L 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 70643702 70643702 G A SLC39A11 3'UTR 0.33 TCGA-D3-A8GM-06 17 71196839 71196839 T A COG1 Missense_Mutation p.L402Q 0.17 deleterious(0) possibly_damaging(0.492) TCGA-D3-A8GM-06 17 7127379 7127379 G T ACADVL Missense_Mutation p.Q498H 0.42 deleterious(0) possibly_damaging(0.654) TCGA-D3-A8GM-06 17 71335013 71335013 T A SDK2 Missense_Mutation p.I2078F 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 17 71389774 71389774 G A SDK2 Nonsense_Mutation p.Q1275* 0.37 TCGA-D3-A8GM-06 17 71395334 71395334 G A SDK2 Silent p.S1022S 0.33 TCGA-D3-A8GM-06 17 7154562 7154562 G A CTDNEP1 Silent p.A18A 0.12 TCGA-D3-A8GM-06 17 7154563 7154563 G A CTDNEP1 Missense_Mutation p.A18V 0.12 tolerated_low_confidence(0.2) benign(0.006) TCGA-D3-A8GM-06 17 7162966 7162966 C T ELP5 Silent p.L305L 0.31 TCGA-D3-A8GM-06 17 72285743 72285743 G A DNAI2 Missense_Mutation p.E160K 0.28 tolerated(0.7) benign(0.004) TCGA-D3-A8GM-06 17 72285853 72285853 C A DNAI2 Missense_Mutation p.S196R 0.31 tolerated(0.34) benign(0.008) TCGA-D3-A8GM-06 17 72339231 72339231 G A KIF19 Missense_Mutation p.D130N 0.38 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GM-06 17 72368613 72368613 C T GPR142 Silent p.F421F 0.33 TCGA-D3-A8GM-06 17 72436143 72436143 C T GPRC5C Silent p.P121P 0.26 TCGA-D3-A8GM-06 17 72588244 72588244 C T C17orf77 Missense_Mutation p.S20F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-D3-A8GM-06 17 72842271 72842271 C T GRIN2C Missense_Mutation p.A762T 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GM-06 17 72846764 72846764 G A GRIN2C Missense_Mutation p.P419L 0.30 tolerated(0.16) benign(0.23) TCGA-D3-A8GM-06 17 72937999 72937999 C T OTOP3 Missense_Mutation p.S165F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 17 73059231 73059231 G T KCTD2 3'UTR 0.43 TCGA-D3-A8GM-06 17 73566126 73566126 G A LLGL2 Missense_Mutation p.G555D 0.23 tolerated(0.06) probably_damaging(0.946) TCGA-D3-A8GM-06 17 73566186 73566186 C T LLGL2 Missense_Mutation p.P575L 0.58 deleterious(0.01) possibly_damaging(0.611) TCGA-D3-A8GM-06 17 73625526 73625526 G A RECQL5 Silent p.F659F 0.12 TCGA-D3-A8GM-06 17 73739905 73739905 C T ITGB4 Missense_Mutation p.S1025F 0.25 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 17 73838516 73838516 G A UNC13D Silent p.I189I 0.30 TCGA-D3-A8GM-06 17 74005252 74005252 C T EVPL Missense_Mutation p.R1345Q 0.40 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 17 74005599 74005599 C T EVPL Silent p.K1229K 0.31 TCGA-D3-A8GM-06 17 74011674 74011674 C T EVPL Silent p.E582E 0.20 TCGA-D3-A8GM-06 17 74013874 74013874 C T EVPL Silent p.P552P 0.14 TCGA-D3-A8GM-06 17 74020180 74020180 G A EVPL Silent p.A40A 0.21 TCGA-D3-A8GM-06 17 74097885 74097885 A G EXOC7 Silent p.P62P 0.34 TCGA-D3-A8GM-06 17 74157999 74157999 G A RNF157 Missense_Mutation p.R293C 0.33 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 17 74564875 74564875 C T ST6GALNAC2 Silent p.P259P 0.06 TCGA-D3-A8GM-06 17 7473755 7473755 C T SENP3 Nonsense_Mutation p.R475* 0.19 TCGA-D3-A8GM-06 17 7495183 7495184 - G FXR2 Frame_Shift_Ins p.E664Gfs*4 0.31 TCGA-D3-A8GM-06 17 76075568 76075568 T C TNRC6C Silent p.L1098L 0.28 TCGA-D3-A8GM-06 17 76486869 76486869 C T DNAH17 Missense_Mutation p.E2230K 0.18 probably_damaging(0.996) TCGA-D3-A8GM-06 17 76497753 76497753 C A DNAH17-AS1 3'UTR 0.26 TCGA-D3-A8GM-06 17 76497896 76497896 C T DNAH17 Silent p.R1739R 0.30 TCGA-D3-A8GM-06 17 76498818 76498818 G A DNAH17-AS1 3'UTR 0.22 TCGA-D3-A8GM-06 17 76567437 76567437 C T DNAH17 Silent p.K252K 0.29 TCGA-D3-A8GM-06 17 76824998 76824998 G A USP36 Silent p.S189S 0.27 TCGA-D3-A8GM-06 17 76968777 76968777 G A LGALS3BP Silent p.Y213Y 0.45 TCGA-D3-A8GM-06 17 76968778 76968778 T G LGALS3BP Missense_Mutation p.Y213S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 17 7701603 7701603 G A DNAH2 Missense_Mutation p.E2787K 0.45 probably_damaging(1) TCGA-D3-A8GM-06 17 77043710 77043710 G A C1QTNF1 Missense_Mutation p.G129E 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 7721318 7721318 G A DNAH2 Missense_Mutation p.A3431T 0.16 probably_damaging(0.962) TCGA-D3-A8GM-06 17 7752275 7752275 C T KDM6B Missense_Mutation p.P890L 0.26 possibly_damaging(0.859) TCGA-D3-A8GM-06 17 77768975 77768975 G A CBX8 Missense_Mutation p.P210L 0.21 tolerated(0.09) possibly_damaging(0.713) TCGA-D3-A8GM-06 17 78178042 78178042 C T CARD14 Missense_Mutation p.P767L 0.20 tolerated(0.08) benign(0.063) TCGA-D3-A8GM-06 17 78184313 78184313 G A SGSH Missense_Mutation p.P483S 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 17 78269567 78269567 G A RNF213 Missense_Mutation p.D656N 0.30 benign(0.014) TCGA-D3-A8GM-06 17 78269569 78269569 T A RNF213 Missense_Mutation p.D656E 0.30 benign(0.005) TCGA-D3-A8GM-06 17 78317054 78317054 G A RNF213 Missense_Mutation p.A2038T 0.38 benign(0.011) TCGA-D3-A8GM-06 17 78317771 78317771 C T RNF213 Silent p.L2100L 0.36 TCGA-D3-A8GM-06 17 78321549 78321549 C T RNF213 Silent p.V3138V 0.37 TCGA-D3-A8GM-06 17 78323688 78323688 C A RNF213 Nonsense_Mutation p.S3357* 0.28 TCGA-D3-A8GM-06 17 78357599 78357599 G C RNF213 Silent p.R4731R 0.41 TCGA-D3-A8GM-06 17 78831633 78831633 A G RPTOR Missense_Mutation p.Q481R 0.24 deleterious(0) benign(0.213) TCGA-D3-A8GM-06 17 79082368 79082368 G A BAIAP2 Intron 0.41 TCGA-D3-A8GM-06 17 79095637 79095637 G A AATK Missense_Mutation p.S700F 0.25 tolerated(0.69) benign(0.002) TCGA-D3-A8GM-06 17 79095830 79095830 G A AATK Missense_Mutation p.P636S 0.31 tolerated(0.09) benign(0.007) TCGA-D3-A8GM-06 17 79171960 79171960 G A AZI1 Silent p.P475P 0.25 TCGA-D3-A8GM-06 17 7917269 7917269 G A GUCY2D Missense_Mutation p.E779K 0.24 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GM-06 17 79180580 79180580 G A AZI1 Missense_Mutation p.T160I 0.34 tolerated(0.07) benign(0.023) TCGA-D3-A8GM-06 17 79220309 79220309 G A SLC38A10 Silent p.L803L 0.28 TCGA-D3-A8GM-06 17 79408931 79408931 C T RP11-1055B8.7 Missense_Mutation p.R186W 0.42 probably_damaging(0.997) TCGA-D3-A8GM-06 17 79424470 79424470 C T RP11-1055B8.7 Silent p.L1631L 0.44 TCGA-D3-A8GM-06 17 79424471 79424471 C T RP11-1055B8.7 Silent p.L1632L 0.47 TCGA-D3-A8GM-06 17 79428040 79428040 G T RP11-1055B8.7 Silent p.G2117G 0.14 TCGA-D3-A8GM-06 17 79514024 79514024 G A C17orf70 Missense_Mutation p.S695F 0.25 deleterious(0.04) benign(0.053) TCGA-D3-A8GM-06 17 79514352 79514352 G A C17orf70 Missense_Mutation p.P586S 0.28 tolerated(0.75) benign(0.314) TCGA-D3-A8GM-06 17 7951809 7951809 G A ALOX15B Missense_Mutation p.E653K 0.37 tolerated(0.11) benign(0.019) TCGA-D3-A8GM-06 17 79580502 79580502 G A NPLOC4 Silent p.F76F 0.10 TCGA-D3-A8GM-06 17 79671440 79671440 G T SLC25A10 Missense_Mutation p.D81Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-D3-A8GM-06 17 7984419 7984419 C T ALOX12B Intron 0.11 TCGA-D3-A8GM-06 17 79880688 79880688 G A MAFG Silent p.A94A 0.29 TCGA-D3-A8GM-06 17 79892907 79892907 G A PYCR1 Silent p.D145D 0.36 TCGA-D3-A8GM-06 17 79912179 79912179 C T NOTUM Silent p.P379P 0.18 TCGA-D3-A8GM-06 17 80007818 80007818 G A RFNG Missense_Mutation p.A213V 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GM-06 17 80014544 80014544 G A GPS1 Missense_Mutation p.A426T 0.27 deleterious(0) possibly_damaging(0.798) TCGA-D3-A8GM-06 17 80045589 80045589 G A FASN Silent p.F1005F 0.33 TCGA-D3-A8GM-06 17 80210960 80210960 G T CSNK1D Missense_Mutation p.P166H 0.39 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-D3-A8GM-06 17 80282613 80282613 G A SECTM1 Missense_Mutation p.P83L 0.35 deleterious(0) benign(0.197) TCGA-D3-A8GM-06 17 8051387 8051387 G A PER1 Missense_Mutation p.L388F 0.56 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 17 8053154 8053154 G A PER1 Silent p.G190G 0.39 TCGA-D3-A8GM-06 17 80543813 80543813 C T FOXK2 Missense_Mutation p.T438I 0.28 deleterious(0) benign(0.347) TCGA-D3-A8GM-06 17 80708446 80708446 G A FN3K Missense_Mutation p.A249T 0.05 deleterious(0.02) possibly_damaging(0.532) TCGA-D3-A8GM-06 17 80788991 80788991 G T ZNF750 Missense_Mutation p.P447Q 0.27 tolerated(1) benign(0) TCGA-D3-A8GM-06 17 80828156 80828156 G A TBCD Missense_Mutation p.V459M 0.32 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GM-06 17 8172277 8172277 G A PFAS Missense_Mutation p.V1238I 0.17 tolerated(0.4) benign(0.041) TCGA-D3-A8GM-06 17 8249133 8249133 G A ODF4 Missense_Mutation p.G246E 0.11 tolerated(1) benign(0.006) TCGA-D3-A8GM-06 17 8272464 8272464 G A KRBA2 Silent p.L489L 0.40 TCGA-D3-A8GM-06 17 8366654 8366654 T - NDEL1 Intron 0.20 TCGA-D3-A8GM-06 17 8424517 8424517 G A MYH10 Missense_Mutation p.R682C 0.46 probably_damaging(0.999) TCGA-D3-A8GM-06 17 8702265 8702265 G A MFSD6L Silent p.I58I 0.41 TCGA-D3-A8GM-06 17 9615404 9615404 C T USP43 Missense_Mutation p.P764S 0.17 tolerated(0.2) benign(0.039) TCGA-D3-A8GM-06 17 9676217 9676217 G A DHRS7C Silent p.A199A 0.10 TCGA-D3-A8GM-06 17 9757914 9757914 C T GLP2R Missense_Mutation p.L203F 0.21 tolerated(0.36) benign(0.4) TCGA-D3-A8GM-06 17 9783724 9783724 C T GLP2R Missense_Mutation p.P392L 0.42 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A8GM-06 18 10680307 10680307 C T PIEZO2 Missense_Mutation p.G2501E 0.12 deleterious(0) possibly_damaging(0.557) TCGA-D3-A8GM-06 18 117135 117135 C T ROCK1P1 RNA 0.49 TCGA-D3-A8GM-06 18 12359960 12359960 G A AFG3L2 Missense_Mutation p.R240W 0.42 deleterious(0.01) benign(0.056) TCGA-D3-A8GM-06 18 12955484 12955484 G A SEH1L Missense_Mutation p.R62H 0.31 tolerated(0.07) benign(0.169) TCGA-D3-A8GM-06 18 13117581 13117581 C A CEP192 Intron 0.15 TCGA-D3-A8GM-06 18 13621201 13621201 C T LDLRAD4 Silent p.Y89Y 0.39 TCGA-D3-A8GM-06 18 14763728 14763728 G A ANKRD30B Silent p.A288A 0.17 TCGA-D3-A8GM-06 18 15323273 15323273 G C RNU6-721P 5'Flank 0.17 TCGA-D3-A8GM-06 18 19444743 19444743 A T MIB1 3'UTR 0.25 TCGA-D3-A8GM-06 18 19996442 19996442 C T CTAGE1 Missense_Mutation p.D445N 0.37 tolerated(0.09) benign(0.106) TCGA-D3-A8GM-06 18 203147 203147 T A USP14 Missense_Mutation p.F331Y 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 18 21330942 21330942 C T LAMA3 Silent p.L249L 0.46 TCGA-D3-A8GM-06 18 21357534 21357534 T A LAMA3 Missense_Mutation p.F473L 0.45 benign(0.005) TCGA-D3-A8GM-06 18 21426302 21426302 C T LAMA3 Missense_Mutation p.S1254F 0.40 probably_damaging(0.996) TCGA-D3-A8GM-06 18 21487587 21487587 C A LAMA3 Silent p.T2264T 0.18 TCGA-D3-A8GM-06 18 21487736 21487736 G A LAMA3 Missense_Mutation p.M2284I 0.38 benign(0.003) TCGA-D3-A8GM-06 18 21526172 21526172 G A LAMA3 Missense_Mutation p.G3092E 0.40 probably_damaging(0.989) TCGA-D3-A8GM-06 18 24436182 24436182 G A AQP4 Missense_Mutation p.S322L 0.19 deleterious_low_confidence(0) possibly_damaging(0.574) TCGA-D3-A8GM-06 18 25570158 25570158 G A CDH2 Missense_Mutation p.P501S 0.12 tolerated(0.65) benign(0.277) TCGA-D3-A8GM-06 18 25572684 25572684 G A CDH2 Missense_Mutation p.P427S 0.43 tolerated(0.11) benign(0.111) TCGA-D3-A8GM-06 18 28574227 28574227 C T DSC3 Missense_Mutation p.E869K 0.07 deleterious(0) possibly_damaging(0.859) TCGA-D3-A8GM-06 18 28581615 28581615 G A DSC3 Missense_Mutation p.S735L 0.09 deleterious(0) possibly_damaging(0.848) TCGA-D3-A8GM-06 18 28587044 28587044 T C DSC3 Missense_Mutation p.N573D 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 18 28650743 28650743 G A DSC2 Silent p.A733A 0.17 TCGA-D3-A8GM-06 18 28660142 28660142 C T DSC2 Missense_Mutation p.M480I 0.37 tolerated(1) benign(0) TCGA-D3-A8GM-06 18 28710409 28710409 G A DSC1 3'UTR 0.38 TCGA-D3-A8GM-06 18 28712384 28712384 G A DSC1 Intron 0.42 TCGA-D3-A8GM-06 18 2892118 2892118 C T EMILIN2 Missense_Mutation p.H665Y 0.14 tolerated(0.1) benign(0.002) TCGA-D3-A8GM-06 18 28970695 28970695 C T DSG4 Silent p.I198I 0.07 TCGA-D3-A8GM-06 18 28983388 28983388 G A DSG4 Missense_Mutation p.G476E 0.37 tolerated(0.1) benign(0.015) TCGA-D3-A8GM-06 18 29867539 29867539 G A GAREM Missense_Mutation p.R341W 0.16 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 18 30926332 30926332 G A CCDC178 Silent p.L167L 0.19 TCGA-D3-A8GM-06 18 31432828 31432828 T - NOL4 Frame_Shift_Del p.N632Ifs*16 0.13 TCGA-D3-A8GM-06 18 34753020 34753020 C T KIAA1328 Missense_Mutation p.P500L 0.19 deleterious(0.02) benign(0.048) TCGA-D3-A8GM-06 18 39584424 39584424 C A PIK3C3 Silent p.S363S 0.31 TCGA-D3-A8GM-06 18 42532264 42532264 C T SETBP1 Missense_Mutation p.R987W 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 18 43310411 43310411 G A SLC14A1 Missense_Mutation p.M98I 0.49 deleterious(0.02) possibly_damaging(0.891) TCGA-D3-A8GM-06 18 43529533 43529533 A C EPG5 Missense_Mutation p.C472G 0.17 tolerated(0.29) probably_damaging(0.943) TCGA-D3-A8GM-06 18 44260376 44260376 T C ST8SIA5 Missense_Mutation p.N254D 0.38 probably_damaging(0.999) TCGA-D3-A8GM-06 18 44284563 44284563 C T ST8SIA5 Missense_Mutation p.E66K 0.37 benign(0.073) TCGA-D3-A8GM-06 18 44559958 44559958 C T TCEB3B Missense_Mutation p.E560K 0.41 tolerated(0.11) probably_damaging(0.949) TCGA-D3-A8GM-06 18 44561317 44561317 C T TCEB3B Missense_Mutation p.E107K 0.51 deleterious(0) possibly_damaging(0.874) TCGA-D3-A8GM-06 18 45394767 45394767 A G SMAD2 Silent p.D194D 0.14 TCGA-D3-A8GM-06 18 47364108 47364108 C T MYO5B Silent p.R1639R 0.18 TCGA-D3-A8GM-06 18 47373546 47373546 C T MYO5B Missense_Mutation p.E1477K 0.52 deleterious(0) probably_damaging(0.94) TCGA-D3-A8GM-06 18 48255702 48255702 G A MAPK4 Silent p.S414S 0.67 TCGA-D3-A8GM-06 18 48255703 48255703 T A MAPK4 Missense_Mutation p.S415T 0.60 tolerated_low_confidence(0.15) probably_damaging(0.952) TCGA-D3-A8GM-06 18 50683753 50683753 C T DCC Missense_Mutation p.S430L 0.21 deleterious(0) possibly_damaging(0.629) TCGA-D3-A8GM-06 18 50912467 50912467 G A DCC Missense_Mutation p.G805E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 18 50985648 50985648 G A DCC Missense_Mutation p.D1147N 0.29 tolerated(0.06) possibly_damaging(0.835) TCGA-D3-A8GM-06 18 52927221 52927221 G A TCF4 Missense_Mutation p.S445L 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 18 54339835 54339835 A G WDR7 Missense_Mutation p.D30G 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 18 55143902 55143902 G A ONECUT2 Missense_Mutation p.D488N 0.19 deleterious(0.01) possibly_damaging(0.691) TCGA-D3-A8GM-06 18 55143996 55143996 G A ONECUT2 3'UTR 0.50 TCGA-D3-A8GM-06 18 56205101 56205101 G A ALPK2 Missense_Mutation p.A773V 0.46 tolerated(0.08) benign(0.012) TCGA-D3-A8GM-06 18 56246372 56246372 G A ALPK2 Missense_Mutation p.P546S 0.45 tolerated(0.18) benign(0.367) TCGA-D3-A8GM-06 18 57107012 57107012 C T CCBE1 Missense_Mutation p.G271D 0.30 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 18 59195340 59195340 C T CDH20 Silent p.P386P 0.14 TCGA-D3-A8GM-06 18 59195423 59195423 A G CDH20 Missense_Mutation p.K414R 0.14 tolerated(1) benign(0.004) TCGA-D3-A8GM-06 18 59221573 59221573 G A CDH20 Nonsense_Mutation p.W684* 0.20 TCGA-D3-A8GM-06 18 59221574 59221574 G A CDH20 Nonsense_Mutation p.W684* 0.20 TCGA-D3-A8GM-06 18 59221757 59221757 C T CDH20 Silent p.L745L 0.32 TCGA-D3-A8GM-06 18 5956174 5956174 G A L3MBTL4 3'UTR 0.22 TCGA-D3-A8GM-06 18 59894882 59894882 G T KIAA1468 Nonsense_Mutation p.E372* 0.33 TCGA-D3-A8GM-06 18 61160420 61160420 G A SERPINB5 Intron 0.30 TCGA-D3-A8GM-06 18 61232836 61232836 T C SERPINB12 Silent p.G268G 0.16 TCGA-D3-A8GM-06 18 61323095 61323095 G A SERPINB3 Silent p.L323L 0.17 TCGA-D3-A8GM-06 18 61582796 61582796 A T SERPINB10 Nonsense_Mutation p.K18* 0.45 TCGA-D3-A8GM-06 18 61587138 61587138 G A SERPINB10 Silent p.E163E 0.14 TCGA-D3-A8GM-06 18 61653676 61653676 C T SERPINB8 Intron 0.33 TCGA-D3-A8GM-06 18 619310 619310 G A CLUL1 Silent p.K68K 0.16 TCGA-D3-A8GM-06 18 63511053 63511053 G A CDH7 Silent p.L329L 0.51 TCGA-D3-A8GM-06 18 63511054 63511054 G A CDH7 Missense_Mutation p.D330N 0.52 tolerated(0.16) benign(0.325) TCGA-D3-A8GM-06 18 65179857 65179857 T C DSEL Silent p.Q673Q 0.15 TCGA-D3-A8GM-06 18 66506147 66506147 T A CCDC102B Missense_Mutation p.L271I 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-D3-A8GM-06 18 67562970 67562970 C T CD226 Missense_Mutation p.E232K 0.19 tolerated(0.5) benign(0.343) TCGA-D3-A8GM-06 18 67753879 67753879 A G RTTN Silent p.P1448P 0.20 TCGA-D3-A8GM-06 18 6898493 6898493 G A ARHGAP28 Intron 0.45 TCGA-D3-A8GM-06 18 6949112 6949112 C T LAMA1 Silent p.R2848R 0.42 TCGA-D3-A8GM-06 18 6959452 6959452 C T LAMA1 Missense_Mutation p.V2556I 0.51 deleterious(0.04) possibly_damaging(0.458) TCGA-D3-A8GM-06 18 6962054 6962054 C T LAMA1 Missense_Mutation p.G2448S 0.14 tolerated(0.1) benign(0.247) TCGA-D3-A8GM-06 18 6985581 6985581 C T LAMA1 Missense_Mutation p.R1814K 0.48 tolerated(0.98) benign(0.006) TCGA-D3-A8GM-06 18 70205419 70205419 G A CBLN2 Missense_Mutation p.P223S 0.13 deleterious(0.01) benign(0.186) TCGA-D3-A8GM-06 18 72247395 72247395 C T CNDP1 Silent p.S399S 0.46 TCGA-D3-A8GM-06 18 74692253 74692253 C T RP11-862L9.3 5'Flank 0.20 TCGA-D3-A8GM-06 18 756758 756758 G A YES1 Missense_Mutation p.P24S 0.45 tolerated(0.41) benign(0.001) TCGA-D3-A8GM-06 18 76753392 76753392 C T SALL3 Silent p.F467F 0.16 TCGA-D3-A8GM-06 18 76754504 76754504 C T SALL3 Missense_Mutation p.S838F 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A8GM-06 18 77102294 77102294 C T ATP9B Silent p.L770L 0.22 TCGA-D3-A8GM-06 18 77659589 77659589 A G KCNG2 Missense_Mutation p.S392G 0.18 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 18 8824886 8824887 - G SOGA2 Frame_Shift_Ins p.P1129Afs*83 0.11 TCGA-D3-A8GM-06 18 9859259 9859259 T C RAB31 Silent p.N175N 0.14 TCGA-D3-A8GM-06 18 9887608 9887608 C T TXNDC2 Missense_Mutation p.P378S 0.15 tolerated(1) benign(0.036) TCGA-D3-A8GM-06 19 10071210 10071210 G A COL5A3 Silent p.T1705T 0.16 TCGA-D3-A8GM-06 19 10286293 10286293 G A DNMT1 Missense_Mutation p.P191S 0.38 tolerated_low_confidence(0.6) possibly_damaging(0.876) TCGA-D3-A8GM-06 19 10334880 10334880 C T S1PR2 Silent p.T234T 0.12 TCGA-D3-A8GM-06 19 1043393 1043393 G A ABCA7 Nonsense_Mutation p.W284* 0.21 TCGA-D3-A8GM-06 19 10439451 10439451 G A RAVER1 Missense_Mutation p.T225M 0.16 tolerated(0.7) probably_damaging(0.99) TCGA-D3-A8GM-06 19 10461363 10461363 G A TYK2 3'UTR 0.25 TCGA-D3-A8GM-06 19 1048978 1048978 C T ABCA7 Missense_Mutation p.P785L 0.31 tolerated(0.17) benign(0.015) TCGA-D3-A8GM-06 19 1048985 1048985 C T ABCA7 Silent p.P787P 0.31 TCGA-D3-A8GM-06 19 10503816 10503816 G A CDC37 Silent p.F309F 0.38 TCGA-D3-A8GM-06 19 1062253 1062253 C T ABCA7 Missense_Mutation p.R1885C 0.22 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GM-06 19 10794180 10794180 C T ILF3 Missense_Mutation p.P609S 0.17 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A8GM-06 19 10822972 10822972 T C QTRT1 Missense_Mutation p.V261A 0.45 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 19 10908059 10908059 G A DNM2 Silent p.T400T 0.17 TCGA-D3-A8GM-06 19 1109742 1109742 C T SBNO2 Silent p.E1021E 0.50 TCGA-D3-A8GM-06 19 11303908 11303908 G A KANK2 Missense_Mutation p.A283V 0.14 tolerated(0.14) benign(0.021) TCGA-D3-A8GM-06 19 11313356 11313356 G A DOCK6 Silent p.G1755G 0.16 TCGA-D3-A8GM-06 19 11343967 11343967 C T DOCK6 Missense_Mutation p.R877H 0.21 tolerated(0.12) benign(0.008) TCGA-D3-A8GM-06 19 11486227 11486227 T G SWSAP1 Silent p.L75L 0.40 TCGA-D3-A8GM-06 19 11527678 11527678 A C RGL3 Missense_Mutation p.V68G 0.33 deleterious(0.01) benign(0.372) TCGA-D3-A8GM-06 19 11537598 11537598 G A CCDC151 Missense_Mutation p.R207W 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 19 11618530 11618530 G T ECSIT Missense_Mutation p.P311H 0.48 deleterious(0.02) possibly_damaging(0.765) TCGA-D3-A8GM-06 19 11618648 11618648 G A ECSIT Nonsense_Mutation p.Q272* 0.19 TCGA-D3-A8GM-06 19 11835037 11835037 G A ZNF823 Nonsense_Mutation p.Q55* 0.26 TCGA-D3-A8GM-06 19 12059445 12059445 C A ZNF700 Silent p.T202T 0.43 TCGA-D3-A8GM-06 19 12574893 12574893 G A ZNF709 Missense_Mutation p.P615S 0.20 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GM-06 19 12691403 12691403 G A ZNF490 Missense_Mutation p.H496Y 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GM-06 19 12692154 12692154 A G ZNF490 Silent p.T245T 0.28 TCGA-D3-A8GM-06 19 12940728 12940728 C T RTBDN Nonsense_Mutation p.W54* 0.24 TCGA-D3-A8GM-06 19 12946021 12946021 G T RTBDN 5'UTR 0.31 TCGA-D3-A8GM-06 19 12979648 12979648 G A MAST1 Missense_Mutation p.V920I 0.37 deleterious(0.03) possibly_damaging(0.542) TCGA-D3-A8GM-06 19 12985355 12985355 G A MAST1 Missense_Mutation p.E1462K 0.20 deleterious_low_confidence(0.02) benign(0.007) TCGA-D3-A8GM-06 19 12987160 12987160 A G DNASE2 Silent p.L243L 0.17 TCGA-D3-A8GM-06 19 13010890 13010890 C T SYCE2 Silent p.K180K 0.35 TCGA-D3-A8GM-06 19 13041440 13041440 G A FARSA Nonsense_Mutation p.Q91* 0.24 TCGA-D3-A8GM-06 19 13184829 13184829 T C NFIX Silent p.P269P 0.22 TCGA-D3-A8GM-06 19 13226868 13226868 T C TRMT1 Splice_Site p.X85_splice 0.25 TCGA-D3-A8GM-06 19 13410102 13410102 C T CACNA1A Missense_Mutation p.R782Q 0.23 possibly_damaging(0.776) TCGA-D3-A8GM-06 19 13476228 13476228 G A CACNA1A Silent p.I229I 0.12 TCGA-D3-A8GM-06 19 14024303 14024303 C T CC2D1A Silent p.G200G 0.27 TCGA-D3-A8GM-06 19 14520145 14520145 C T DDX39A Missense_Mutation p.M363I 0.38 deleterious(0.02) possibly_damaging(0.523) TCGA-D3-A8GM-06 19 14626866 14626866 G A DNAJB1 Silent p.P303P 0.30 TCGA-D3-A8GM-06 19 14730147 14730147 G A EMR3 3'UTR 0.56 TCGA-D3-A8GM-06 19 14857734 14857734 G A EMR2 Missense_Mutation p.L689F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 19 14866660 14866660 G A EMR2 Missense_Mutation p.P408S 0.35 deleterious(0.02) benign(0.316) TCGA-D3-A8GM-06 19 1487824 1487824 G A PCSK4 Missense_Mutation p.P185S 0.43 tolerated(0.14) probably_damaging(0.932) TCGA-D3-A8GM-06 19 15052492 15052492 C T OR7C2 Silent p.S64S 0.35 TCGA-D3-A8GM-06 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.20 TCGA-D3-A8GM-06 19 15164615 15164615 C T CASP14 Silent p.F83F 0.25 TCGA-D3-A8GM-06 19 15284877 15284877 A G NOTCH3 Splice_Site p.X1579_splice 0.20 TCGA-D3-A8GM-06 19 15383867 15383867 G A BRD4 Missense_Mutation p.P15L 0.20 unknown(0) TCGA-D3-A8GM-06 19 15587015 15587015 G A PGLYRP2 Missense_Mutation p.P156S 0.23 tolerated(0.06) benign(0.231) TCGA-D3-A8GM-06 19 15733148 15733148 G A CYP4F8 Intron 0.27 TCGA-D3-A8GM-06 19 15734002 15734002 C T CYP4F8 RNA 0.18 TCGA-D3-A8GM-06 19 15807303 15807303 C T CYP4F12 Missense_Mutation p.P460S 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 15807832 15807832 G A CYP4F12 Silent p.L504L 0.23 TCGA-D3-A8GM-06 19 15918274 15918274 C T OR10H1 Missense_Mutation p.D192N 0.15 tolerated(0.63) benign(0.001) TCGA-D3-A8GM-06 19 15918405 15918405 G A OR10H1 Missense_Mutation p.S148F 0.39 deleterious(0.01) benign(0.208) TCGA-D3-A8GM-06 19 15990478 15990478 C T CYP4F2 Missense_Mutation p.G417D 0.18 deleterious(0.02) possibly_damaging(0.753) TCGA-D3-A8GM-06 19 16268126 16268126 C T HSH2D 3'Flank 0.16 TCGA-D3-A8GM-06 19 16301367 16301367 C T FAM32A Missense_Mutation p.H85Y 0.25 deleterious(0.03) benign(0.004) TCGA-D3-A8GM-06 19 16506215 16506215 G A EPS15L1 Missense_Mutation p.P619S 0.20 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GM-06 19 16552748 16552748 C T EPS15L1 Silent p.A40A 0.33 TCGA-D3-A8GM-06 19 16687398 16687398 C T MED26 Missense_Mutation p.V415I 0.15 tolerated(0.17) benign(0.005) TCGA-D3-A8GM-06 19 16770951 16770951 G A SMIM7 5'UTR 0.12 TCGA-D3-A8GM-06 19 16790826 16790826 C T TMEM38A Silent p.I52I 0.28 TCGA-D3-A8GM-06 19 16860988 16860988 G A NWD1 Missense_Mutation p.R512K 0.18 tolerated(0.43) benign(0.011) TCGA-D3-A8GM-06 19 16974336 16974336 C T SIN3B Intron 0.24 TCGA-D3-A8GM-06 19 17013543 17013543 C T CPAMD8 Missense_Mutation p.G1581E 0.51 tolerated(0.91) benign(0.055) TCGA-D3-A8GM-06 19 17038981 17038981 G T CPAMD8 Missense_Mutation p.P1117T 0.09 tolerated(0.25) benign(0.312) TCGA-D3-A8GM-06 19 17111227 17111227 G A CPAMD8 Silent p.T335T 0.18 TCGA-D3-A8GM-06 19 17330616 17330616 C T USE1 Silent p.L258L 0.18 TCGA-D3-A8GM-06 19 17434243 17434243 A T ANO8 3'UTR 0.34 TCGA-D3-A8GM-06 19 17534415 17534415 C T MVB12A Silent p.A174A 0.40 TCGA-D3-A8GM-06 19 17735674 17735674 C T UNC13A Silent p.E1387E 0.31 TCGA-D3-A8GM-06 19 17763441 17763441 C T UNC13A Missense_Mutation p.G480S 0.17 deleterious(0.04) benign(0.017) TCGA-D3-A8GM-06 19 17780393 17780393 G A UNC13A Silent p.I121I 0.43 TCGA-D3-A8GM-06 19 17886800 17886800 G A FCHO1 Missense_Mutation p.E338K 0.14 tolerated(0.39) benign(0.231) TCGA-D3-A8GM-06 19 17983416 17983416 G A SLC5A5 Silent p.L96L 0.41 TCGA-D3-A8GM-06 19 1805381 1805381 G A ATP8B3 Missense_Mutation p.S299F 0.58 deleterious(0.01) possibly_damaging(0.905) TCGA-D3-A8GM-06 19 18180385 18180385 G A IL12RB1 Missense_Mutation p.A387V 0.16 tolerated(0.36) benign(0.007) TCGA-D3-A8GM-06 19 18538784 18538784 C T SSBP4 Nonsense_Mutation p.Q91* 0.31 TCGA-D3-A8GM-06 19 18779896 18779896 C T KLHL26 Silent p.I563I 0.36 TCGA-D3-A8GM-06 19 19120830 19120830 T G SUGP2 Missense_Mutation p.K724N 0.05 deleterious(0.01) benign(0.393) TCGA-D3-A8GM-06 19 19136344 19136344 G A SUGP2 Silent p.I271I 0.21 TCGA-D3-A8GM-06 19 19244009 19244009 A C TMEM161A Missense_Mutation p.Y40D 0.28 deleterious(0) possibly_damaging(0.772) TCGA-D3-A8GM-06 19 19312777 19312777 C T NR2C2AP Missense_Mutation p.R126H 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 19 19351451 19351451 G A NCAN Missense_Mutation p.R1150K 0.23 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GM-06 19 19656437 19656437 G A CILP2 Missense_Mutation p.R1028Q 0.15 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 19 1969839 1969839 G A CSNK1G2 Missense_Mutation p.G23E 0.62 deleterious_low_confidence(0) benign(0.343) TCGA-D3-A8GM-06 19 19825209 19825209 C T ZNF14 Missense_Mutation p.D31N 0.19 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 19 20003026 20003026 T C ZNF253 Missense_Mutation p.C324R 0.47 tolerated(0.1) benign(0.002) TCGA-D3-A8GM-06 19 2039741 2039741 C T MKNK2 Silent p.Q423Q 0.39 TCGA-D3-A8GM-06 19 20806954 20806954 G A ZNF626 3'UTR 0.17 TCGA-D3-A8GM-06 19 21607329 21607329 A T ZNF493 Missense_Mutation p.H623L 0.16 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 19 2207593 2207593 G A DOT1L Missense_Mutation p.V293M 0.27 deleterious(0.01) possibly_damaging(0.882) TCGA-D3-A8GM-06 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.17 deleterious(0.03) probably_damaging(0.964) TCGA-D3-A8GM-06 19 22575743 22575743 C T ZNF98 Silent p.Q98Q 0.30 TCGA-D3-A8GM-06 19 22847040 22847040 T C ZNF492 Missense_Mutation p.I190T 0.17 deleterious(0.04) probably_damaging(0.969) TCGA-D3-A8GM-06 19 23159112 23159112 C T ZNF728 Missense_Mutation p.E343K 0.17 tolerated(0.09) benign(0.004) TCGA-D3-A8GM-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.37 tolerated(0.44) benign(0.023) TCGA-D3-A8GM-06 19 23405830 23405830 G A ZNF724P Missense_Mutation p.S406F 0.20 tolerated(0.44) benign(0.008) TCGA-D3-A8GM-06 19 24310084 24310084 C T ZNF254 Missense_Mutation p.H428Y 0.12 deleterious(0.01) possibly_damaging(0.606) TCGA-D3-A8GM-06 19 2806929 2806929 C T THOP1 Silent p.I255I 0.20 TCGA-D3-A8GM-06 19 2933700 2933700 G A ZNF77 Silent p.H475H 0.17 TCGA-D3-A8GM-06 19 29698402 29698402 C T UQCRFS1 3'UTR 0.37 TCGA-D3-A8GM-06 19 3006442 3006442 C T TLE2 Silent p.T492T 0.18 TCGA-D3-A8GM-06 19 30500204 30500204 G A URI1 Missense_Mutation p.V327I 0.10 tolerated(0.41) benign(0.003) TCGA-D3-A8GM-06 19 34857718 34857718 G A GPI Missense_Mutation p.E121K 0.11 tolerated_low_confidence(0.25) benign(0.033) TCGA-D3-A8GM-06 19 34921508 34921508 A G UBA2 Missense_Mutation p.N56D 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 19 3544852 3544852 G T MFSD12 Missense_Mutation p.L459M 0.50 benign(0.133) TCGA-D3-A8GM-06 19 35449623 35449623 G A ZNF792 Missense_Mutation p.S379F 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-D3-A8GM-06 19 35793352 35793352 T C MAG Silent p.Y324Y 0.19 TCGA-D3-A8GM-06 19 35981305 35981305 G A KRTDAP Missense_Mutation p.L14F 0.12 deleterious_low_confidence(0.01) benign(0.006) TCGA-D3-A8GM-06 19 3600423 3600423 G A TBXA2R Silent p.L70L 0.27 TCGA-D3-A8GM-06 19 36051500 36051500 G A ATP4A Silent p.R184R 0.39 TCGA-D3-A8GM-06 19 36222941 36222941 C T KMT2B Missense_Mutation p.P1857L 0.47 benign(0.339) TCGA-D3-A8GM-06 19 36228055 36228055 G A KMT2B Missense_Mutation p.G2481R 0.22 probably_damaging(0.959) TCGA-D3-A8GM-06 19 36321757 36321757 C T NPHS1 Missense_Mutation p.E1195K 0.16 tolerated(0.16) benign(0.004) TCGA-D3-A8GM-06 19 36355570 36355570 C T KIRREL2 Silent p.D582D 0.15 TCGA-D3-A8GM-06 19 36388668 36388668 G A NFKBID 5'UTR 0.21 TCGA-D3-A8GM-06 19 37118410 37118410 C T ZNF382 Silent p.V537V 0.34 TCGA-D3-A8GM-06 19 37129971 37129971 A G ZNF461 Silent p.L426L 0.17 TCGA-D3-A8GM-06 19 3762665 3762665 G A MRPL54 5'UTR 0.16 TCGA-D3-A8GM-06 19 3765299 3765299 C T MRPL54 Missense_Mutation p.P85L 0.36 tolerated(0.21) benign(0.003) TCGA-D3-A8GM-06 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.39 deleterious(0.04) benign(0.382) TCGA-D3-A8GM-06 19 3784366 3784366 G A MATK Silent p.G73G 0.26 TCGA-D3-A8GM-06 19 37880353 37880353 A G ZNF527 Missense_Mutation p.K468E 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 37974915 37974915 T C ZNF570 Missense_Mutation p.C131R 0.33 tolerated(0.24) benign(0) TCGA-D3-A8GM-06 19 38200719 38200719 G A ZNF607 Missense_Mutation p.S5L 0.22 tolerated(0.34) benign(0.007) TCGA-D3-A8GM-06 19 38673305 38673305 G A SIPA1L3 Missense_Mutation p.R1452H 0.18 tolerated(0.61) benign(0.003) TCGA-D3-A8GM-06 19 38853418 38853418 C A CATSPERG Silent p.I807I 0.15 TCGA-D3-A8GM-06 19 38933001 38933001 G A RYR1 Missense_Mutation p.D60N 0.38 possibly_damaging(0.862) TCGA-D3-A8GM-06 19 38945883 38945883 C T RYR1 Silent p.L483L 0.33 TCGA-D3-A8GM-06 19 38951185 38951185 G A RYR1 Missense_Mutation p.C844Y 0.20 benign(0.379) TCGA-D3-A8GM-06 19 38964112 38964112 C T RYR1 Silent p.F1287F 0.43 TCGA-D3-A8GM-06 19 38980050 38980050 C T RYR1 Silent p.L1927L 0.22 TCGA-D3-A8GM-06 19 39019599 39019599 G A RYR1 Silent p.G3681G 0.42 TCGA-D3-A8GM-06 19 39329069 39329069 G A HNRNPL Missense_Mutation p.P509S 0.13 deleterious(0.01) benign(0.109) TCGA-D3-A8GM-06 19 39336350 39336350 G A HNRNPL Missense_Mutation p.P217L 0.11 deleterious(0.01) probably_damaging(0.921) TCGA-D3-A8GM-06 19 39336351 39336351 G A HNRNPL Missense_Mutation p.P217S 0.11 tolerated(0.07) benign(0.429) TCGA-D3-A8GM-06 19 39361588 39361588 G A RINL Missense_Mutation p.P216S 0.33 tolerated(0.11) benign(0.327) TCGA-D3-A8GM-06 19 39517587 39517587 C T FBXO27 Missense_Mutation p.A211T 0.12 deleterious(0.03) possibly_damaging(0.713) TCGA-D3-A8GM-06 19 39600722 39600722 G A PAPL Silent p.V427V 0.17 TCGA-D3-A8GM-06 19 39694511 39694511 C T SYCN Silent p.A128A 0.60 TCGA-D3-A8GM-06 19 39873921 39873921 C T SAMD4B Silent p.H682H 0.18 TCGA-D3-A8GM-06 19 39989629 39989629 G A DLL3 Silent p.R5R 0.32 TCGA-D3-A8GM-06 19 40029888 40029888 T - EID2 3'UTR 0.39 TCGA-D3-A8GM-06 19 40364146 40364146 G A FCGBP Silent p.A4832A 0.49 TCGA-D3-A8GM-06 19 40384123 40384123 G A FCGBP Missense_Mutation p.P3163S 0.12 possibly_damaging(0.876) TCGA-D3-A8GM-06 19 40396031 40396031 A T FCGBP Missense_Mutation p.S2456T 0.15 benign(0.012) TCGA-D3-A8GM-06 19 40408351 40408351 C T FCGBP Silent p.G1496G 0.29 TCGA-D3-A8GM-06 19 40421131 40421131 C T FCGBP Silent p.V930V 0.38 TCGA-D3-A8GM-06 19 40541067 40541067 G A ZNF780B Missense_Mutation p.R567C 0.41 tolerated(0.07) benign(0.282) TCGA-D3-A8GM-06 19 40747871 40747871 G A AKT2 Silent p.L183L 0.35 TCGA-D3-A8GM-06 19 40900056 40900056 G A PRX Silent p.S1401S 0.36 TCGA-D3-A8GM-06 19 40900485 40900485 G A PRX Silent p.G1258G 0.17 TCGA-D3-A8GM-06 19 40929151 40929151 G A SERTAD1 Silent p.D101D 0.20 TCGA-D3-A8GM-06 19 41008194 41008194 G A SPTBN4 Missense_Mutation p.A353T 0.20 tolerated(1) benign(0.03) TCGA-D3-A8GM-06 19 41351216 41351216 C T CYP2A6 Missense_Mutation p.D382N 0.45 benign(0.006) TCGA-D3-A8GM-06 19 41354559 41354559 C T CYP2A6 Silent p.E151E 0.38 TCGA-D3-A8GM-06 19 41510057 41510057 T G CYP2B6 Missense_Mutation p.F108C 0.22 deleterious(0.02) probably_damaging(0.949) TCGA-D3-A8GM-06 19 4154994 4154994 G A CREB3L3 Silent p.L42L 0.53 TCGA-D3-A8GM-06 19 4154995 4154995 G A CREB3L3 Missense_Mutation p.G43S 0.54 deleterious(0.02) possibly_damaging(0.449) TCGA-D3-A8GM-06 19 41601888 41601888 G A CYP2A13 3'UTR 0.34 TCGA-D3-A8GM-06 19 41763461 41763461 G A AXL Missense_Mutation p.E754K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 19 41811648 41811648 C T HNRNPUL1 Missense_Mutation p.P777L 0.23 tolerated_low_confidence(0.1) unknown(0) TCGA-D3-A8GM-06 19 41888909 41888909 G A TMEM91 Intron 0.17 TCGA-D3-A8GM-06 19 41925143 41925143 C A BCKDHA Silent p.G196G 0.22 TCGA-D3-A8GM-06 19 41928644 41928644 C T BCKDHA Nonsense_Mutation p.Q322* 0.41 TCGA-D3-A8GM-06 19 42133294 42133294 C T CEACAM4 Missense_Mutation p.R13K 0.32 deleterious(0.01) benign(0.079) TCGA-D3-A8GM-06 19 42191006 42191006 C T CEACAM7 Missense_Mutation p.E71K 0.14 tolerated(0.08) benign(0.202) TCGA-D3-A8GM-06 19 42399534 42399534 C T ARHGEF1 Silent p.S345S 0.22 TCGA-D3-A8GM-06 19 42406723 42406723 C T ARHGEF1 Missense_Mutation p.S528F 0.29 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 19 42583344 42583344 C T ZNF574 Missense_Mutation p.P196S 0.37 deleterious(0.04) benign(0.005) TCGA-D3-A8GM-06 19 42729656 42729656 C T ZNF526 Silent p.R367R 0.36 TCGA-D3-A8GM-06 19 42794684 42794684 C T CIC Silent p.T588T 0.36 TCGA-D3-A8GM-06 19 42794685 42794685 C T CIC Missense_Mutation p.R589W 0.36 probably_damaging(0.973) TCGA-D3-A8GM-06 19 42866252 42866252 G A MEGF8 Missense_Mutation p.G1844R 0.44 tolerated(0.05) possibly_damaging(0.549) TCGA-D3-A8GM-06 19 43098947 43098947 G A CEACAM8 Missense_Mutation p.R12C 0.17 tolerated(0.25) benign(0.004) TCGA-D3-A8GM-06 19 43233484 43233484 T C PSG3 Missense_Mutation p.H345R 0.14 tolerated(1) benign(0.004) TCGA-D3-A8GM-06 19 43359864 43359864 C T PSG10P 5'Flank 0.57 TCGA-D3-A8GM-06 19 43382348 43382348 C T PSG1 Silent p.K49K 0.41 TCGA-D3-A8GM-06 19 43383726 43383726 G A PSG1 Missense_Mutation p.T3I 0.14 deleterious(0.01) benign(0.023) TCGA-D3-A8GM-06 19 43430149 43430149 G A PSG7 Missense_Mutation p.S340L 0.18 deleterious(0) benign(0.279) TCGA-D3-A8GM-06 19 43514178 43514178 C T PSG11 Missense_Mutation p.G327E 0.22 tolerated(0.17) benign(0.036) TCGA-D3-A8GM-06 19 43519497 43519497 G A PSG11 Silent p.F245F 0.21 TCGA-D3-A8GM-06 19 43679376 43679376 C T PSG5 Missense_Mutation p.E319K 0.23 tolerated(0.38) benign(0.004) TCGA-D3-A8GM-06 19 43683134 43683134 G A PSG5 Intron 0.35 TCGA-D3-A8GM-06 19 43698525 43698525 C T PSG4 Missense_Mutation p.E404K 0.20 tolerated(0.31) possibly_damaging(0.728) TCGA-D3-A8GM-06 19 43979550 43979550 G A PHLDB3 3'UTR 0.42 TCGA-D3-A8GM-06 19 44048356 44048356 T C XRCC1 Missense_Mutation p.Y551C 0.18 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GM-06 19 44130137 44130137 C T CADM4 Silent p.R227R 0.33 TCGA-D3-A8GM-06 19 44131466 44131466 C T CADM4 Silent p.L72L 0.28 TCGA-D3-A8GM-06 19 44223705 44223705 C T IRGC Missense_Mutation p.S332F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 19 44936477 44936477 G A ZNF229 Missense_Mutation p.S53F 0.17 tolerated(0.07) benign(0.31) TCGA-D3-A8GM-06 19 4513419 4513419 C T PLIN4 Missense_Mutation p.G171R 0.13 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 19 45179601 45179601 C T CEACAM19 Silent p.A161A 0.14 TCGA-D3-A8GM-06 19 45262912 45262912 C - BCL3 3'UTR 0.43 TCGA-D3-A8GM-06 19 4529365 4529365 C T PLIN5 Intron 0.45 TCGA-D3-A8GM-06 19 45801472 45801472 C T MARK4 Intron 0.18 TCGA-D3-A8GM-06 19 45998227 45998227 G A RTN2 Missense_Mutation p.T39I 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 46137650 46137650 C T EML2 Missense_Mutation p.V288I 0.12 deleterious(0.02) possibly_damaging(0.677) TCGA-D3-A8GM-06 19 46289584 46289584 G T DMWD Silent p.A390A 0.21 TCGA-D3-A8GM-06 19 46313976 46313976 G A RSPH6A Missense_Mutation p.T258M 0.36 tolerated(0.07) benign(0.4) TCGA-D3-A8GM-06 19 46317945 46317945 C T RSPH6A Missense_Mutation p.G164R 0.23 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-D3-A8GM-06 19 46417844 46417844 C T NANOS2 Silent p.E36E 0.11 TCGA-D3-A8GM-06 19 47151785 47151785 A T DACT3 Missense_Mutation p.I615K 0.21 deleterious(0) possibly_damaging(0.506) TCGA-D3-A8GM-06 19 47151787 47151787 C T DACT3 Silent p.K614K 0.21 TCGA-D3-A8GM-06 19 47195233 47195233 G A PRKD2 Missense_Mutation p.S529F 0.14 deleterious(0) possibly_damaging(0.888) TCGA-D3-A8GM-06 19 47280479 47280479 G A SLC1A5 Silent p.I414I 0.28 TCGA-D3-A8GM-06 19 47424786 47424786 C T ARHGAP35 Missense_Mutation p.H952Y 0.41 tolerated(0.45) probably_damaging(0.995) TCGA-D3-A8GM-06 19 48219990 48219990 C T EHD2 Missense_Mutation p.R41C 0.19 deleterious(0.04) possibly_damaging(0.586) TCGA-D3-A8GM-06 19 48618973 48618973 C T LIG1 Missense_Mutation p.R898Q 0.18 tolerated(0.39) benign(0.001) TCGA-D3-A8GM-06 19 48783039 48783039 G A ZNF114 5'UTR 0.39 TCGA-D3-A8GM-06 19 48878907 48878907 C T SYNGR4 Silent p.F123F 0.28 TCGA-D3-A8GM-06 19 48953673 48953673 A G GRWD1 Missense_Mutation p.Q191R 0.32 tolerated(0.44) benign(0.003) TCGA-D3-A8GM-06 19 48967468 48967468 C T KCNJ14 Missense_Mutation p.P249S 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-D3-A8GM-06 19 48978132 48978132 T G CYTH2 Missense_Mutation p.I245S 0.34 deleterious(0.05) possibly_damaging(0.546) TCGA-D3-A8GM-06 19 4902856 4902856 G A ARRDC5 Silent p.L8L 0.15 TCGA-D3-A8GM-06 19 49244586 49244586 G A IZUMO1 Silent p.L302L 0.65 TCGA-D3-A8GM-06 19 49538856 49538856 A C CGB1 3'Flank 0.35 TCGA-D3-A8GM-06 19 49671650 49671650 C T TRPM4 Silent p.V194V 0.39 TCGA-D3-A8GM-06 19 49703626 49703626 G A TRPM4 Silent p.R905R 0.10 TCGA-D3-A8GM-06 19 49796626 49796627 - A SLC6A16 Frame_Shift_Ins p.L544Ffs*24 0.15 TCGA-D3-A8GM-06 19 49812198 49812198 G A SLC6A16 Silent p.F388F 0.24 TCGA-D3-A8GM-06 19 49814482 49814482 A G SLC6A16 Silent p.S41S 0.15 TCGA-D3-A8GM-06 19 49999638 49999638 C T RPS11 5'UTR 0.31 TCGA-D3-A8GM-06 19 50027829 50027829 G A FCGRT Missense_Mutation p.A223T 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.22 TCGA-D3-A8GM-06 19 50172192 50172192 C T BCL2L12 Missense_Mutation p.P196L 0.11 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GM-06 19 50209234 50209234 G A CPT1C Missense_Mutation p.G345R 0.41 tolerated(0.36) probably_damaging(0.932) TCGA-D3-A8GM-06 19 50385558 50385558 C T TBC1D17 Silent p.F233F 0.22 TCGA-D3-A8GM-06 19 50398412 50398412 C T IL4I1 Missense_Mutation p.R115K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 19 50436204 50436204 C A ATF5 Missense_Mutation p.A235D 0.50 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 504864 504864 G A MADCAM1 Missense_Mutation p.E350K 0.09 deleterious_low_confidence(0.03) benign(0.292) TCGA-D3-A8GM-06 19 50839881 50839881 C T NAPSB RNA 0.20 TCGA-D3-A8GM-06 19 50861947 50861947 C T NAPSA Missense_Mutation p.V376I 0.21 deleterious(0.04) probably_damaging(0.964) TCGA-D3-A8GM-06 19 50905094 50905094 C T POLD1 Missense_Mutation p.R126C 0.35 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GM-06 19 51128789 51128789 C T SYT3 Missense_Mutation p.G479R 0.16 deleterious(0.01) possibly_damaging(0.775) TCGA-D3-A8GM-06 19 51140739 51140739 G A SYT3 5'UTR 0.50 TCGA-D3-A8GM-06 19 51509931 51509931 A G KLK9 Silent p.G83G 0.12 TCGA-D3-A8GM-06 19 51518062 51518062 G A KLK10 Silent p.S275S 0.36 TCGA-D3-A8GM-06 19 51563315 51563315 C T KLK13 Missense_Mutation p.G92E 0.14 tolerated(0.6) benign(0.272) TCGA-D3-A8GM-06 19 51628367 51628367 C A SIGLEC9 Missense_Mutation p.P46T 0.32 deleterious(0) probably_damaging(0.923) TCGA-D3-A8GM-06 19 51628517 51628517 G A SIGLEC9 Missense_Mutation p.D96N 0.19 tolerated(0.09) benign(0.342) TCGA-D3-A8GM-06 19 51767289 51767289 G A SIGLECL1 5'UTR 0.08 TCGA-D3-A8GM-06 19 51769094 51769094 G A SIGLECL1 Missense_Mutation p.G123E 0.19 deleterious(0) benign(0.074) TCGA-D3-A8GM-06 19 51770654 51770654 G A SIGLECL1 Silent p.A146A 0.46 TCGA-D3-A8GM-06 19 51885677 51885677 G A LIM2 Missense_Mutation p.S149F 0.29 deleterious(0.04) benign(0.002) TCGA-D3-A8GM-06 19 51955776 51955776 G A SIGLEC8 Missense_Mutation p.H453Y 0.13 deleterious(0.01) possibly_damaging(0.574) TCGA-D3-A8GM-06 19 51981941 51981941 C T CEACAM18 Silent p.F76F 0.30 TCGA-D3-A8GM-06 19 52004853 52004853 G A SIGLEC12 Silent p.S45S 0.39 TCGA-D3-A8GM-06 19 52084679 52084679 C T ZNF175 Silent p.F36F 0.27 TCGA-D3-A8GM-06 19 5212231 5212231 G A PTPRS Silent p.I1600I 0.24 TCGA-D3-A8GM-06 19 52147157 52147157 G A SIGLEC14 Missense_Mutation p.S296F 0.69 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GM-06 19 52249960 52249960 G A FPR1 Silent p.F96F 0.26 TCGA-D3-A8GM-06 19 52327344 52327344 C T FPR3 Silent p.L115L 0.26 TCGA-D3-A8GM-06 19 52825931 52825931 C T ZNF480 Silent p.I476I 0.17 TCGA-D3-A8GM-06 19 52825932 52825932 C T ZNF480 Missense_Mutation p.H477Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 19 53453757 53453757 G A ZNF816 Missense_Mutation p.S424L 0.40 deleterious(0.05) benign(0.014) TCGA-D3-A8GM-06 19 537068 537068 G A CDC34 Missense_Mutation p.A140T 0.20 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 19 53770054 53770054 C T VN1R4 Missense_Mutation p.D289N 0.20 tolerated(0.11) benign(0.098) TCGA-D3-A8GM-06 19 53885451 53885451 G A ZNF525 3'UTR 0.18 TCGA-D3-A8GM-06 19 53889544 53889544 A G ZNF525 3'Flank 0.42 TCGA-D3-A8GM-06 19 53994239 53994239 C T ZNF813 Silent p.V251V 0.43 TCGA-D3-A8GM-06 19 54080951 54080951 C T ZNF331 Silent p.G379G 0.20 TCGA-D3-A8GM-06 19 54200818 54200818 T A MIR525 RNA 0.38 TCGA-D3-A8GM-06 19 54204541 54204541 G A MIR520B RNA 0.46 TCGA-D3-A8GM-06 19 54254529 54254529 C T MIR522 RNA 0.46 TCGA-D3-A8GM-06 19 54299204 54299204 G A NLRP12 Missense_Mutation p.L1003F 0.44 deleterious(0) unknown(0) TCGA-D3-A8GM-06 19 54327485 54327485 G A NLRP12 5'UTR 0.47 TCGA-D3-A8GM-06 19 54394957 54394957 G A PRKCG Missense_Mutation p.D187N 0.24 tolerated(0.08) possibly_damaging(0.515) TCGA-D3-A8GM-06 19 54417756 54417756 C T CACNG7 Missense_Mutation p.R67W 0.36 deleterious(0.02) possibly_damaging(0.67) TCGA-D3-A8GM-06 19 54444857 54444857 C T CACNG7 Silent p.F186F 0.61 TCGA-D3-A8GM-06 19 54445501 54445501 C T CACNG7 Missense_Mutation p.A261V 0.39 tolerated_low_confidence(0.13) benign(0.071) TCGA-D3-A8GM-06 19 54545430 54545430 T C VSTM1 Missense_Mutation p.T170A 0.15 tolerated(0.18) benign(0.004) TCGA-D3-A8GM-06 19 5455891 5455891 G A ZNRF4 Missense_Mutation p.R130Q 0.17 tolerated(0.21) benign(0.31) TCGA-D3-A8GM-06 19 54561723 54561723 G A VSTM1 Silent p.N64N 0.20 TCGA-D3-A8GM-06 19 54610127 54610127 G A NDUFA3 Missense_Mutation p.R58H 0.38 deleterious(0.01) benign(0.432) TCGA-D3-A8GM-06 19 54652406 54652406 G A CNOT3 Missense_Mutation p.S445N 0.67 tolerated(0.24) benign(0.213) TCGA-D3-A8GM-06 19 547291 547291 G A GZMM Missense_Mutation p.G23R 0.14 tolerated(0.17) benign(0.011) TCGA-D3-A8GM-06 19 54756833 54756833 C T LILRB5 Missense_Mutation p.G459R 0.44 tolerated(0.45) benign(0.138) TCGA-D3-A8GM-06 19 54782310 54782310 G A LILRB2 Silent p.F354F 0.34 TCGA-D3-A8GM-06 19 54822836 54822836 G A LILRA5 Missense_Mutation p.S187L 0.37 deleterious(0.04) possibly_damaging(0.809) TCGA-D3-A8GM-06 19 54868001 54868001 G A LAIR1 Missense_Mutation p.P197L 0.21 tolerated(0.08) probably_damaging(0.981) TCGA-D3-A8GM-06 19 55046959 55046959 G A KIR3DX1 Silent p.G168G 0.40 TCGA-D3-A8GM-06 19 55107381 55107381 C T LILRA1 Silent p.P313P 0.07 TCGA-D3-A8GM-06 19 55174488 55174488 G A LILRB4 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-D3-A8GM-06 19 55220910 55220910 G A AC098784.2 3'Flank 0.36 TCGA-D3-A8GM-06 19 55222142 55222142 C T AC098784.2 3'Flank 0.39 TCGA-D3-A8GM-06 19 55340823 55340823 C A KIR3DL1 Silent p.P336P 0.34 TCGA-D3-A8GM-06 19 55450410 55450410 C T NLRP7 Missense_Mutation p.E593K 0.46 tolerated(0.06) benign(0.102) TCGA-D3-A8GM-06 19 55451186 55451186 A G NLRP7 Missense_Mutation p.L334P 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 19 55603888 55603888 G A PPP1R12C Silent p.A659A 0.57 TCGA-D3-A8GM-06 19 55692976 55692976 G C PTPRH 3'UTR 0.28 TCGA-D3-A8GM-06 19 55711818 55711818 G A PTPRH Silent p.I402I 0.40 TCGA-D3-A8GM-06 19 55776740 55776740 G A HSPBP1 Missense_Mutation p.P304L 0.38 deleterious(0.01) probably_damaging(0.926) TCGA-D3-A8GM-06 19 56249473 56249473 C T NLRP9 Missense_Mutation p.E90K 0.39 tolerated(0.29) probably_damaging(0.945) TCGA-D3-A8GM-06 19 56369922 56369922 C T NLRP4 Missense_Mutation p.P388L 0.15 deleterious(0) possibly_damaging(0.581) TCGA-D3-A8GM-06 19 56370290 56370290 G A NLRP4 Missense_Mutation p.E511K 0.48 deleterious(0.01) possibly_damaging(0.542) TCGA-D3-A8GM-06 19 56459331 56459331 T C NLRP8 Silent p.S21S 0.44 TCGA-D3-A8GM-06 19 56499320 56499320 C T NLRP8 3'UTR 0.52 TCGA-D3-A8GM-06 19 56539868 56539868 C T NLRP5 Missense_Mutation p.P757S 0.18 deleterious(0.05) possibly_damaging(0.854) TCGA-D3-A8GM-06 19 56733172 56733172 G A ZSCAN5A Silent p.F421F 0.39 TCGA-D3-A8GM-06 19 56934467 56934467 A C ZNF583 Missense_Mutation p.K147T 0.38 tolerated(0.12) benign(0.23) TCGA-D3-A8GM-06 19 57062026 57062026 C T ZFP28 Intron 0.34 TCGA-D3-A8GM-06 19 57066374 57066374 A G ZFP28 Silent p.T740T 0.19 TCGA-D3-A8GM-06 19 57334966 57334966 G A PEG3 Missense_Mutation p.S159F 0.26 tolerated(0.24) benign(0.017) TCGA-D3-A8GM-06 19 5772937 5772937 G A CATSPERD Missense_Mutation p.M634I 0.20 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 19 57766128 57766128 A G ZNF805 3'Flank 0.13 TCGA-D3-A8GM-06 19 57803525 57803525 C T ZNF460 Missense_Mutation p.T539M 0.18 tolerated(0.26) possibly_damaging(0.454) TCGA-D3-A8GM-06 19 57868119 57868119 A - ZNF304 Frame_Shift_Del p.M296Cfs*127 0.19 TCGA-D3-A8GM-06 19 57868686 57868686 C T ZNF304 Silent p.A483A 0.37 TCGA-D3-A8GM-06 19 58131725 58131725 T C ZNF134 Missense_Mutation p.C80R 0.26 tolerated(0.23) probably_damaging(0.958) TCGA-D3-A8GM-06 19 58189430 58189430 C T ZSCAN4 Missense_Mutation p.S182F 0.38 deleterious(0.03) possibly_damaging(0.695) TCGA-D3-A8GM-06 19 58287973 58287973 T G ZNF586 Missense_Mutation p.N33K 0.37 deleterious(0) benign(0.045) TCGA-D3-A8GM-06 19 5831261 5831261 C T FUT6 3'UTR 0.25 TCGA-D3-A8GM-06 19 5831388 5831388 C T FUT6 3'UTR 0.34 TCGA-D3-A8GM-06 19 5831576 5831576 C T FUT6 Missense_Mutation p.A335T 0.30 tolerated(0.35) benign(0.311) TCGA-D3-A8GM-06 19 58420541 58420541 T C ZNF417 Missense_Mutation p.N369D 0.17 tolerated(0.62) benign(0.281) TCGA-D3-A8GM-06 19 58438707 58438707 G T ZNF418 Missense_Mutation p.T281N 0.41 tolerated(0.06) probably_damaging(0.951) TCGA-D3-A8GM-06 19 58600118 58600118 C T ZSCAN18 Missense_Mutation p.G220S 0.46 tolerated(0.59) benign(0.185) TCGA-D3-A8GM-06 19 58639297 58639297 G A ZNF329 Missense_Mutation p.S525F 0.19 tolerated(0.69) possibly_damaging(0.83) TCGA-D3-A8GM-06 19 58850099 58850099 C T ZSCAN22 Missense_Mutation p.P295S 0.20 deleterious(0.01) possibly_damaging(0.749) TCGA-D3-A8GM-06 19 58850723 58850723 C T ZSCAN22 3'UTR 0.29 TCGA-D3-A8GM-06 19 58928507 58928507 C T ZNF584 Missense_Mutation p.H208Y 0.29 deleterious(0.05) benign(0.053) TCGA-D3-A8GM-06 19 58965657 58965657 C T ZNF324B Missense_Mutation p.P62S 0.24 tolerated(0.28) benign(0.045) TCGA-D3-A8GM-06 19 58965658 58965658 C T ZNF324B Missense_Mutation p.P62L 0.24 tolerated(0.63) benign(0.009) TCGA-D3-A8GM-06 19 58966858 58966858 C G ZNF324B Missense_Mutation p.R183G 0.16 tolerated(0.38) benign(0.003) TCGA-D3-A8GM-06 19 58989135 58989135 G A ZNF446 Silent p.G158G 0.48 TCGA-D3-A8GM-06 19 59082627 59082627 G A MZF1 Missense_Mutation p.R44C 0.41 tolerated(0.1) possibly_damaging(0.807) TCGA-D3-A8GM-06 19 6016117 6016117 G A RFX2 Missense_Mutation p.R255W 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 19 6433550 6433550 T C SLC25A41 Missense_Mutation p.Y52C 0.40 deleterious(0) possibly_damaging(0.822) TCGA-D3-A8GM-06 19 6590967 6590967 C T CD70 Missense_Mutation p.G16E 0.09 tolerated(0.59) benign(0) TCGA-D3-A8GM-06 19 6709720 6709720 T C C3 Missense_Mutation p.K607R 0.23 tolerated(0.1) benign(0.128) TCGA-D3-A8GM-06 19 6772862 6772862 G A VAV1 Missense_Mutation p.R15Q 0.22 tolerated(0.22) probably_damaging(0.978) TCGA-D3-A8GM-06 19 7267524 7267524 G A INSR Missense_Mutation p.R162C 0.36 deleterious(0.01) possibly_damaging(0.896) TCGA-D3-A8GM-06 19 7601133 7601133 T C PNPLA6 Missense_Mutation p.F106L 0.12 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 19 7601137 7601137 A T PNPLA6 Missense_Mutation p.Y107F 0.12 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 19 7677824 7677824 G A CAMSAP3 Silent p.P842P 0.56 TCGA-D3-A8GM-06 19 7712743 7712743 T C STXBP2 3'UTR 0.24 TCGA-D3-A8GM-06 19 7712747 7712747 C T STXBP2 3'UTR 0.17 TCGA-D3-A8GM-06 19 7755355 7755355 G A FCER2 Silent p.H186H 0.16 TCGA-D3-A8GM-06 19 7809094 7809094 C T CD209 Silent p.Q304Q 0.14 TCGA-D3-A8GM-06 19 7977343 7977343 G A MAP2K7 3'UTR 0.30 TCGA-D3-A8GM-06 19 807887 807887 C T PTBP1 Missense_Mutation p.L380F 0.20 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 19 8175754 8175754 C T FBN3 Silent p.L1436L 0.16 TCGA-D3-A8GM-06 19 830724 830724 A G AZU1 Missense_Mutation p.N126S 0.20 tolerated(0.39) benign(0.17) TCGA-D3-A8GM-06 19 8326855 8326855 C T CERS4 Silent p.S349S 0.16 TCGA-D3-A8GM-06 19 8601902 8601902 C T MYO1F Missense_Mutation p.C577Y 0.26 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 19 8615533 8615533 C T MYO1F Missense_Mutation p.V273I 0.36 tolerated(0.61) benign(0.173) TCGA-D3-A8GM-06 19 8645836 8645836 G A ADAMTS10 Nonsense_Mutation p.Q1085* 0.24 TCGA-D3-A8GM-06 19 8665821 8665821 G A ADAMTS10 Silent p.I267I 0.37 TCGA-D3-A8GM-06 19 868089 868089 G A MED16 3'UTR 0.35 TCGA-D3-A8GM-06 19 8808014 8808014 G A ACTL9 Silent p.L346L 0.17 TCGA-D3-A8GM-06 19 8976633 8976633 G A MUC16 Nonsense_Mutation p.Q14115* 0.31 TCGA-D3-A8GM-06 19 8987255 8987255 G A MUC16 Silent p.P13944P 0.26 TCGA-D3-A8GM-06 19 8996340 8996340 G A MUC16 Silent p.N13744N 0.34 TCGA-D3-A8GM-06 19 9013861 9013861 G A MUC16 Silent p.S12843S 0.19 TCGA-D3-A8GM-06 19 9014629 9014629 C T MUC16 Silent p.V12782V 0.36 TCGA-D3-A8GM-06 19 9047124 9047124 G A MUC16 Missense_Mutation p.P11503S 0.47 benign(0) TCGA-D3-A8GM-06 19 9047799 9047799 G A MUC16 Missense_Mutation p.P11278S 0.43 benign(0.003) TCGA-D3-A8GM-06 19 9058054 9058054 C T MUC16 Missense_Mutation p.E9798K 0.28 unknown(0) TCGA-D3-A8GM-06 19 9058504 9058504 G A MUC16 Silent p.L9648L 0.20 TCGA-D3-A8GM-06 19 9058614 9058614 G A MUC16 Missense_Mutation p.A9611V 0.30 unknown(0) TCGA-D3-A8GM-06 19 9060692 9060692 C T MUC16 Silent p.E8918E 0.14 TCGA-D3-A8GM-06 19 9063528 9063528 G A MUC16 Missense_Mutation p.S7973F 0.24 unknown(0) TCGA-D3-A8GM-06 19 9065502 9065502 G A MUC16 Missense_Mutation p.S7315F 0.15 unknown(0) TCGA-D3-A8GM-06 19 9065519 9065519 G A MUC16 Silent p.I7309I 0.35 TCGA-D3-A8GM-06 19 9068626 9068626 G A MUC16 Missense_Mutation p.R6274C 0.32 unknown(0) TCGA-D3-A8GM-06 19 9069548 9069548 C T MUC16 Silent p.R5966R 0.15 TCGA-D3-A8GM-06 19 9070524 9070524 G A MUC16 Missense_Mutation p.S5641F 0.23 unknown(0) TCGA-D3-A8GM-06 19 9075273 9075273 G A MUC16 Missense_Mutation p.S4058F 0.15 unknown(0) TCGA-D3-A8GM-06 19 9077759 9077759 C T MUC16 Nonsense_Mutation p.W3229* 0.19 TCGA-D3-A8GM-06 19 9077760 9077760 C T MUC16 Nonsense_Mutation p.W3229* 0.18 TCGA-D3-A8GM-06 19 9082576 9082576 G A MUC16 Missense_Mutation p.P3080L 0.43 unknown(0) TCGA-D3-A8GM-06 19 9085705 9085705 G A MUC16 Missense_Mutation p.S2037F 0.34 unknown(0) TCGA-D3-A8GM-06 19 9296831 9296831 C T OR7D2 Missense_Mutation p.A125V 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-D3-A8GM-06 19 9324585 9324585 G A OR7D4 Missense_Mutation p.S310F 0.43 tolerated_low_confidence(0.1) benign(0.025) TCGA-D3-A8GM-06 19 9361751 9361751 T C OR7E24 Missense_Mutation p.F11S 0.59 tolerated_low_confidence(0.22) benign(0.113) TCGA-D3-A8GM-06 19 9406855 9406855 G A ZNF699 Missense_Mutation p.H409Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 19 9801026 9801026 C T ZNF812 Missense_Mutation p.E385K 0.24 deleterious(0) benign(0.003) TCGA-D3-A8GM-06 19 9801599 9801599 C T ZNF812 Missense_Mutation p.E194K 0.22 tolerated(0.12) probably_damaging(0.991) TCGA-D3-A8GM-06 1 100155013 100155013 C T PALMD Silent p.I399I 0.18 TCGA-D3-A8GM-06 1 100206372 100206372 G A FRRS1 Missense_Mutation p.P185S 0.27 tolerated(0.44) benign(0.03) TCGA-D3-A8GM-06 1 100387202 100387202 T A AGL Missense_Mutation p.L1532I 0.44 tolerated(0.06) benign(0.373) TCGA-D3-A8GM-06 1 101705584 101705584 G A S1PR1 Missense_Mutation p.M348I 0.22 tolerated(0.27) benign(0) TCGA-D3-A8GM-06 1 10231305 10231305 C T UBE4B Missense_Mutation p.P1148L 0.51 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 103491867 103491867 C T COL11A1 Missense_Mutation p.E268K 0.54 benign(0.124) TCGA-D3-A8GM-06 1 104297374 104297374 C T AMY1C Missense_Mutation p.P347S 0.21 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 1 10699617 10699617 G C CASZ1 Missense_Mutation p.S1554R 0.56 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GM-06 1 107867460 107867460 G A NTNG1 Missense_Mutation p.R268K 0.28 tolerated(0.21) benign(0.068) TCGA-D3-A8GM-06 1 109170810 109170810 C T FAM102B Missense_Mutation p.S193F 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GM-06 1 110030286 110030286 C G ATXN7L2 Missense_Mutation p.P187R 0.19 tolerated(0.11) benign(0.042) TCGA-D3-A8GM-06 1 110172016 110172016 C T AMPD2 Missense_Mutation p.P643L 0.23 deleterious(0.02) possibly_damaging(0.706) TCGA-D3-A8GM-06 1 110259951 110259951 G A GSTM5 Intron 0.23 TCGA-D3-A8GM-06 1 110734811 110734811 T C SLC6A17 Missense_Mutation p.I361T 0.13 tolerated(0.65) possibly_damaging(0.597) TCGA-D3-A8GM-06 1 111146060 111146060 T C KCNA2 Missense_Mutation p.S449G 0.12 tolerated_low_confidence(0.12) benign(0.197) TCGA-D3-A8GM-06 1 111825190 111825190 C T CHIAP2 Intron 0.28 TCGA-D3-A8GM-06 1 111957634 111957634 C G OVGP1 Missense_Mutation p.V497L 0.29 deleterious_low_confidence(0.05) benign(0.092) TCGA-D3-A8GM-06 1 111983720 111983720 C T WDR77 3'UTR 0.18 TCGA-D3-A8GM-06 1 112042968 112042968 G A ADORA3 Intron 0.49 TCGA-D3-A8GM-06 1 113098514 113098514 G A ST7L Silent p.L458L 0.31 TCGA-D3-A8GM-06 1 113637023 113637023 C T LRIG2 Missense_Mutation p.S193F 0.37 deleterious(0.03) benign(0.411) TCGA-D3-A8GM-06 1 114128164 114128164 C T MAGI3 Missense_Mutation p.P237S 0.23 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 1 114512706 114512706 C T HIPK1 Missense_Mutation p.S967F 0.41 deleterious(0.02) benign(0.104) TCGA-D3-A8GM-06 1 115124219 115124219 G A BCAS2 5'UTR 0.36 TCGA-D3-A8GM-06 1 115231289 115231289 C T AMPD1 Silent p.Q69Q 0.29 TCGA-D3-A8GM-06 1 115430293 115430293 C T SYCP1 Nonsense_Mutation p.Q413* 0.38 TCGA-D3-A8GM-06 1 117491914 117491914 C T PTGFRN Silent p.P311P 0.27 TCGA-D3-A8GM-06 1 117564447 117564447 C T CD101 Missense_Mutation p.S757F 0.25 deleterious(0) possibly_damaging(0.807) TCGA-D3-A8GM-06 1 118165834 118165834 C T FAM46C Missense_Mutation p.S115F 0.39 deleterious(0) benign(0.185) TCGA-D3-A8GM-06 1 118496611 118496611 C T SPAG17 3'UTR 0.35 TCGA-D3-A8GM-06 1 118514509 118514509 C T SPAG17 Silent p.K2101K 0.21 TCGA-D3-A8GM-06 1 119427752 119427752 G A TBX15 Missense_Mutation p.S365F 0.26 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 1 119575902 119575902 G A WARS2 Nonsense_Mutation p.R239* 0.30 TCGA-D3-A8GM-06 1 119575903 119575903 G A WARS2 Silent p.V238V 0.30 TCGA-D3-A8GM-06 1 119936478 119936478 T C HAO2 3'UTR 0.43 TCGA-D3-A8GM-06 1 120438188 120438188 C T ADAM30 Missense_Mutation p.D258N 0.40 tolerated(0.1) benign(0.247) TCGA-D3-A8GM-06 1 120438960 120438960 G A ADAM30 5'UTR 0.38 TCGA-D3-A8GM-06 1 12819291 12819291 C T C1orf158 Missense_Mutation p.R92C 0.50 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GM-06 1 12952845 12952845 C T PRAMEF10 Missense_Mutation p.E443K 0.41 tolerated(0.07) possibly_damaging(0.669) TCGA-D3-A8GM-06 1 12955476 12955476 G A PRAMEF10 Missense_Mutation p.S68F 0.67 deleterious(0.02) possibly_damaging(0.596) TCGA-D3-A8GM-06 1 13001086 13001086 C T PRAMEF6 Silent p.L199L 0.15 TCGA-D3-A8GM-06 1 1425718 1425718 C T ATAD3B Silent p.F473F 0.46 TCGA-D3-A8GM-06 1 142713786 142713786 C T RP11-417J8.6 RNA 0.31 TCGA-D3-A8GM-06 1 142713800 142713800 C T RP11-417J8.6 RNA 0.19 TCGA-D3-A8GM-06 1 144923713 144923713 G A PDE4DIP Nonsense_Mutation p.Q249* 0.04 TCGA-D3-A8GM-06 1 144994641 144994641 C T PDE4DIP Missense_Mutation p.E31K 0.10 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 145555731 145555731 G A ANKRD35 Missense_Mutation p.A27T 0.27 deleterious(0) possibly_damaging(0.787) TCGA-D3-A8GM-06 1 145556670 145556670 C T ANKRD35 Silent p.I80I 0.60 TCGA-D3-A8GM-06 1 146466126 146466126 C T NBPF12 3'UTR 0.15 TCGA-D3-A8GM-06 1 147124302 147124302 G A ACP6 Silent p.I277I 0.10 TCGA-D3-A8GM-06 1 147381021 147381021 C T GJA8 Silent p.S313S 0.47 TCGA-D3-A8GM-06 1 150310679 150310679 G A PRPF3 Missense_Mutation p.R360Q 0.16 tolerated(0.06) benign(0.034) TCGA-D3-A8GM-06 1 150444706 150444707 - A RPRD2 Frame_Shift_Ins p.N1095Kfs*2 0.20 TCGA-D3-A8GM-06 1 150526447 150526447 G A ADAMTSL4 Missense_Mutation p.R327H 0.22 tolerated(0.54) benign(0) TCGA-D3-A8GM-06 1 150529187 150529187 G A ADAMTSL4 Missense_Mutation p.R556Q 0.48 tolerated(0.44) benign(0.003) TCGA-D3-A8GM-06 1 150532266 150532266 G A ADAMTSL4 Silent p.Q991Q 0.39 TCGA-D3-A8GM-06 1 151535156 151535156 C T TUFT1 Silent p.I77I 0.09 TCGA-D3-A8GM-06 1 151780087 151780087 C T RORC Missense_Mutation p.R473Q 0.15 deleterious(0.01) possibly_damaging(0.683) TCGA-D3-A8GM-06 1 152057940 152057940 C T TCHHL1 Missense_Mutation p.E740K 0.47 tolerated(0.14) benign(0.007) TCGA-D3-A8GM-06 1 152058445 152058445 C T TCHHL1 Silent p.G571G 0.12 TCGA-D3-A8GM-06 1 152128780 152128780 C T RPTN Silent p.Q265Q 0.17 TCGA-D3-A8GM-06 1 152185379 152185379 C T HRNR 3'UTR 0.55 TCGA-D3-A8GM-06 1 152276442 152276442 T C FLG Silent p.S3640S 0.44 TCGA-D3-A8GM-06 1 152280053 152280053 C A FLG Nonsense_Mutation p.G2437* 0.50 TCGA-D3-A8GM-06 1 152283599 152283599 C T FLG Missense_Mutation p.E1255K 0.45 possibly_damaging(0.621) TCGA-D3-A8GM-06 1 152284167 152284167 C T FLG Silent p.G1065G 0.15 TCGA-D3-A8GM-06 1 152324407 152324407 C T FLG2 Missense_Mutation p.G1952E 0.17 benign(0.118) TCGA-D3-A8GM-06 1 152327317 152327317 C T FLG2 Missense_Mutation p.G982E 0.45 unknown(0) TCGA-D3-A8GM-06 1 152331258 152331258 C T FLG2 Missense_Mutation p.E35K 0.51 unknown(0) TCGA-D3-A8GM-06 1 152383112 152383112 C T CRNN Missense_Mutation p.R149K 0.20 tolerated(0.96) benign(0.114) TCGA-D3-A8GM-06 1 152487966 152487966 C T CRCT1 Missense_Mutation p.S36F 0.30 unknown(0) TCGA-D3-A8GM-06 1 152785334 152785334 C T LCE1B 3'UTR 0.10 TCGA-D3-A8GM-06 1 153043153 153043153 G A SPRR2B Missense_Mutation p.P55S 0.10 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 1 153391769 153391769 C T S100A7A Missense_Mutation p.S97F 0.25 tolerated(0.15) benign(0.052) TCGA-D3-A8GM-06 1 153533830 153533830 A - S100A2 3'UTR 0.20 TCGA-D3-A8GM-06 1 153713817 153713817 C T INTS3 Silent p.I97I 0.14 TCGA-D3-A8GM-06 1 153745091 153745091 C A INTS3 Intron 0.49 TCGA-D3-A8GM-06 1 153982476 153982476 C T NUP210L Silent p.Q1634Q 0.12 TCGA-D3-A8GM-06 1 154090272 154090272 C T NUP210L Missense_Mutation p.G517S 0.18 deleterious(0.04) probably_damaging(0.989) TCGA-D3-A8GM-06 1 154192335 154192335 G A C1orf43 Missense_Mutation p.P49S 0.54 tolerated(0.07) possibly_damaging(0.887) TCGA-D3-A8GM-06 1 154543915 154543915 G A CHRNB2 Missense_Mutation p.V206M 0.17 tolerated(0.14) benign(0.216) TCGA-D3-A8GM-06 1 154544231 154544231 C T CHRNB2 Missense_Mutation p.S311F 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 154685990 154685990 C T KCNN3 Missense_Mutation p.E617K 0.18 tolerated(0.15) possibly_damaging(0.831) TCGA-D3-A8GM-06 1 154744541 154744541 G A KCNN3 Missense_Mutation p.T453M 0.17 deleterious(0) possibly_damaging(0.897) TCGA-D3-A8GM-06 1 154744732 154744732 G A KCNN3 Silent p.R389R 0.24 TCGA-D3-A8GM-06 1 154919270 154919270 C T PBXIP1 Missense_Mutation p.E294K 0.22 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GM-06 1 154932072 154932072 G A PYGO2 Missense_Mutation p.P135L 0.15 deleterious(0) possibly_damaging(0.908) TCGA-D3-A8GM-06 1 154988118 154988118 C T ZBTB7B Missense_Mutation p.P362S 0.44 deleterious(0.04) benign(0.094) TCGA-D3-A8GM-06 1 155028269 155028269 C T ADAM15 Missense_Mutation p.R206W 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 155100462 155100462 C T EFNA1 Silent p.F3F 0.19 TCGA-D3-A8GM-06 1 155100463 155100463 C T EFNA1 Missense_Mutation p.L4F 0.20 tolerated(0.22) benign(0.003) TCGA-D3-A8GM-06 1 155110140 155110140 T C SLC50A1 Missense_Mutation p.L129S 0.41 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D3-A8GM-06 1 155583489 155583489 C T MSTO1 Missense_Mutation p.P477L 0.28 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 1 155629407 155629407 G A YY1AP1 3'UTR 0.49 TCGA-D3-A8GM-06 1 155823263 155823263 G A GON4L Silent p.I103I 0.47 TCGA-D3-A8GM-06 1 155932417 155932417 G A ARHGEF2 Silent p.Y356Y 0.47 TCGA-D3-A8GM-06 1 156011305 156011305 G A UBQLN4 Nonsense_Mutation p.Q542* 0.13 TCGA-D3-A8GM-06 1 156038218 156038218 C T RAB25 Missense_Mutation p.R133W 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D3-A8GM-06 1 156237958 156237958 T - SMG5 Frame_Shift_Del p.R286Gfs*3 0.16 TCGA-D3-A8GM-06 1 156618380 156618380 C T BCAN Missense_Mutation p.P264S 0.47 tolerated(0.39) possibly_damaging(0.874) TCGA-D3-A8GM-06 1 156639807 156639807 G T NES Silent p.G1391G 0.19 TCGA-D3-A8GM-06 1 156752115 156752115 C T PRCC Silent p.I170I 0.57 TCGA-D3-A8GM-06 1 156761560 156761560 T G PRCC Missense_Mutation p.D385E 0.33 tolerated(0.23) possibly_damaging(0.477) TCGA-D3-A8GM-06 1 156784086 156784086 C T SH2D2A Silent p.R113R 0.45 TCGA-D3-A8GM-06 1 156845361 156845361 C T NTRK1 Silent p.F468F 0.20 TCGA-D3-A8GM-06 1 157504345 157504345 G A FCRL5 Intron 0.17 TCGA-D3-A8GM-06 1 157504518 157504518 C T FCRL5 Missense_Mutation p.G523R 0.53 tolerated(0.74) benign(0.085) TCGA-D3-A8GM-06 1 157665145 157665145 C T FCRL3 Missense_Mutation p.S462N 0.13 deleterious(0) possibly_damaging(0.88) TCGA-D3-A8GM-06 1 157666999 157666999 A G FCRL3 Missense_Mutation p.W259R 0.15 tolerated(0.08) possibly_damaging(0.787) TCGA-D3-A8GM-06 1 157716505 157716505 C T FCRL2 3'UTR 0.11 TCGA-D3-A8GM-06 1 157804465 157804465 G A CD5L Silent p.R150R 0.19 TCGA-D3-A8GM-06 1 15802608 15802608 C T CELA2B 5'UTR 0.40 TCGA-D3-A8GM-06 1 158224954 158224954 G A CD1A Missense_Mutation p.G47S 0.56 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 1 158262116 158262116 G A CD1C Missense_Mutation p.G191S 0.47 tolerated(0.31) benign(0.348) TCGA-D3-A8GM-06 1 158262498 158262498 G A CD1C Silent p.R241R 0.46 TCGA-D3-A8GM-06 1 158299726 158299726 T C CD1B Missense_Mutation p.T175A 0.56 tolerated(0.08) benign(0.001) TCGA-D3-A8GM-06 1 158300633 158300633 C T CD1B Missense_Mutation p.G94E 0.50 tolerated(0.26) benign(0.331) TCGA-D3-A8GM-06 1 158325175 158325175 C T CD1E Silent p.F147F 0.20 TCGA-D3-A8GM-06 1 158326480 158326480 C T CD1E Intron 0.53 TCGA-D3-A8GM-06 1 158390349 158390349 G A OR10K2 Missense_Mutation p.S103F 0.10 tolerated(1) benign(0.003) TCGA-D3-A8GM-06 1 158435649 158435649 C T OR10K1 Nonsense_Mutation p.Q100* 0.56 TCGA-D3-A8GM-06 1 158449715 158449715 T C OR10R2 Silent p.F16F 0.51 TCGA-D3-A8GM-06 1 158450239 158450239 C T OR10R2 Missense_Mutation p.A191V 0.50 tolerated(0.07) possibly_damaging(0.491) TCGA-D3-A8GM-06 1 158549510 158549510 G A OR10X1 Silent p.I60I 0.17 TCGA-D3-A8GM-06 1 158581112 158581112 C T SPTA1 Missense_Mutation p.R2401Q 0.48 tolerated(0.14) benign(0.057) TCGA-D3-A8GM-06 1 158592937 158592937 G A SPTA1 Missense_Mutation p.P1986S 0.17 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 1 158645953 158645953 C T SPTA1 Missense_Mutation p.E364K 0.49 tolerated(0.62) benign(0.005) TCGA-D3-A8GM-06 1 158735788 158735788 G A OR6N1 Missense_Mutation p.P229S 0.69 tolerated(0.06) benign(0.06) TCGA-D3-A8GM-06 1 158746626 158746626 G A OR6N2 Missense_Mutation p.S267F 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 1 158746882 158746882 G A OR6N2 Missense_Mutation p.P182S 0.08 tolerated(0.67) possibly_damaging(0.904) TCGA-D3-A8GM-06 1 158912170 158912170 G A PYHIN1 Missense_Mutation p.G328E 0.19 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 1 159163804 159163804 C T CADM3 Missense_Mutation p.S256F 0.13 tolerated(0.27) benign(0.047) TCGA-D3-A8GM-06 1 159175345 159175345 G A DARC Missense_Mutation p.G41E 0.55 tolerated(0.27) benign(0.001) TCGA-D3-A8GM-06 1 159176261 159176261 C A DARC 3'UTR 0.05 TCGA-D3-A8GM-06 1 159410438 159410438 C T OR10J1 Missense_Mutation p.P297L 0.41 deleterious(0.01) benign(0.35) TCGA-D3-A8GM-06 1 159779293 159779293 C T FCRL6 Missense_Mutation p.P236S 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GM-06 1 159779294 159779294 C T FCRL6 Missense_Mutation p.P236L 0.15 tolerated(0.06) possibly_damaging(0.895) TCGA-D3-A8GM-06 1 159828598 159828598 C T VSIG8 Missense_Mutation p.D52N 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 1 159900506 159900506 C T IGSF9 Missense_Mutation p.E597K 0.19 deleterious(0) possibly_damaging(0.769) TCGA-D3-A8GM-06 1 160106495 160106495 G A ATP1A2 Missense_Mutation p.G900E 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 160124871 160124871 C T ATP1A4 Nonsense_Mutation p.R82* 0.47 TCGA-D3-A8GM-06 1 160151817 160151817 C T ATP1A4 Missense_Mutation p.L989F 0.17 tolerated(0.05) probably_damaging(0.925) TCGA-D3-A8GM-06 1 160208419 160208419 T C DCAF8 Missense_Mutation p.Q281R 0.14 tolerated(0.17) benign(0.001) TCGA-D3-A8GM-06 1 160460023 160460023 G A SLAMF6 Missense_Mutation p.S254F 0.49 tolerated(0.71) benign(0.021) TCGA-D3-A8GM-06 1 16070672 16070672 C T TMEM82 Silent p.A118A 0.60 TCGA-D3-A8GM-06 1 16101328 16101328 G A FBLIM1 Silent p.G309G 0.53 TCGA-D3-A8GM-06 1 161021161 161021161 G A ARHGAP30 Missense_Mutation p.R455W 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 1 161021437 161021437 C T ARHGAP30 Missense_Mutation p.D363N 0.19 tolerated(0.56) benign(0.002) TCGA-D3-A8GM-06 1 16103738 16103738 G A FBLIM1 3'Flank 0.36 TCGA-D3-A8GM-06 1 161165862 161165862 G A ADAMTS4 Intron 0.14 TCGA-D3-A8GM-06 1 161693400 161693400 C T FCRLB Missense_Mutation p.S99F 0.21 tolerated(0.11) possibly_damaging(0.511) TCGA-D3-A8GM-06 1 162337219 162337219 G A NOS1AP Missense_Mutation p.E495K 0.29 tolerated_low_confidence(0.55) benign(0.076) TCGA-D3-A8GM-06 1 162372536 162372536 C T SH2D1B Missense_Mutation p.R64K 0.17 tolerated(0.89) benign(0.002) TCGA-D3-A8GM-06 1 16259209 16259209 G A SPEN Silent p.P2158P 0.54 TCGA-D3-A8GM-06 1 16262718 16262718 C T SPEN Missense_Mutation p.A3328V 0.40 benign(0.14) TCGA-D3-A8GM-06 1 163043388 163043388 C T RGS4 Silent p.F215F 0.49 TCGA-D3-A8GM-06 1 164761743 164761743 G A PBX1 Missense_Mutation p.R93Q 0.10 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GM-06 1 165218876 165218876 G A LMX1A Silent p.L89L 0.50 TCGA-D3-A8GM-06 1 166990999 166990999 C T MAEL Silent p.S404S 0.12 TCGA-D3-A8GM-06 1 167097750 167097750 G A DUSP27 Missense_Mutation p.E1128K 0.40 deleterious(0.04) possibly_damaging(0.849) TCGA-D3-A8GM-06 1 167384894 167384894 C T POU2F1 Silent p.V716V 0.59 TCGA-D3-A8GM-06 1 167666834 167666834 G A RCSD1 Missense_Mutation p.E325K 0.25 tolerated(0.11) possibly_damaging(0.803) TCGA-D3-A8GM-06 1 16892178 16892178 G A NBPF1 Missense_Mutation p.S1005F 0.03 deleterious(0.03) benign(0.109) TCGA-D3-A8GM-06 1 169578815 169578815 G A SELP Silent p.F420F 0.49 TCGA-D3-A8GM-06 1 169677761 169677761 C T SELL Missense_Mutation p.G103E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 169696531 169696531 C T SELE Missense_Mutation p.G535E 0.10 tolerated(0.11) possibly_damaging(0.772) TCGA-D3-A8GM-06 1 170705329 170705329 G A PRRX1 3'UTR 0.14 TCGA-D3-A8GM-06 1 171501613 171501613 A G PRRC2C Silent p.E460E 0.11 TCGA-D3-A8GM-06 1 172002333 172002333 C T DNM3 Silent p.F259F 0.19 TCGA-D3-A8GM-06 1 172007527 172007527 C T DNM3 Silent p.S306S 0.59 TCGA-D3-A8GM-06 1 172577944 172577944 T G SUCO Splice_Site p.X1107_splice 0.13 TCGA-D3-A8GM-06 1 173010706 173010706 G A TNFSF18 Missense_Mutation p.P134L 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 173174510 173174510 T A TNFSF4 Intron 0.09 TCGA-D3-A8GM-06 1 173176367 173176367 G A TNFSF4 5'UTR 0.45 TCGA-D3-A8GM-06 1 173702865 173702865 C T KLHL20 Nonsense_Mutation p.R13* 0.21 TCGA-D3-A8GM-06 1 173952775 173952775 T G RC3H1 Missense_Mutation p.T125P 0.16 tolerated(0.09) possibly_damaging(0.548) TCGA-D3-A8GM-06 1 174417778 174417778 T - GPR52 Frame_Shift_Del p.F178Lfs*60 0.34 TCGA-D3-A8GM-06 1 175067641 175067641 G A TNN Missense_Mutation p.G677S 0.16 tolerated(0.09) probably_damaging(0.96) TCGA-D3-A8GM-06 1 175097212 175097212 C T TNN Silent p.G1030G 0.47 TCGA-D3-A8GM-06 1 175299250 175299250 G A TNR Silent p.N1251N 0.13 TCGA-D3-A8GM-06 1 175348720 175348720 C T TNR Missense_Mutation p.G644D 0.12 tolerated(0.81) benign(0.002) TCGA-D3-A8GM-06 1 17555442 17555442 G A PADI1 Splice_Site p.X276_splice 0.50 TCGA-D3-A8GM-06 1 176526189 176526189 G A PAPPA2 Missense_Mutation p.G244E 0.43 deleterious(0.01) benign(0.047) TCGA-D3-A8GM-06 1 176668249 176668249 G A PAPPA2 Silent p.V920V 0.50 TCGA-D3-A8GM-06 1 176760491 176760491 C T PAPPA2 Silent p.I1631I 0.48 TCGA-D3-A8GM-06 1 177030324 177030324 G A ASTN1 Missense_Mutation p.H121Y 0.44 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-D3-A8GM-06 1 17723631 17723631 C T PADI6 RNA 0.33 TCGA-D3-A8GM-06 1 178425849 178425849 C T RASAL2 Intron 0.55 TCGA-D3-A8GM-06 1 178442221 178442221 C T RASAL2 Silent p.I1230I 0.16 TCGA-D3-A8GM-06 1 179354423 179354423 G A AXDND1 Missense_Mutation p.M264I 0.55 tolerated(0.64) benign(0.001) TCGA-D3-A8GM-06 1 179437679 179437679 G A AXDND1 Missense_Mutation p.E634K 0.50 tolerated(0.91) benign(0.007) TCGA-D3-A8GM-06 1 179523634 179523634 T A NPHS2 Silent p.G257G 0.49 TCGA-D3-A8GM-06 1 179620161 179620161 G A TDRD5 Missense_Mutation p.E654K 0.21 deleterious(0.03) possibly_damaging(0.821) TCGA-D3-A8GM-06 1 179815807 179815807 G A TOR1AIP2 Missense_Mutation p.S271F 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-D3-A8GM-06 1 180063750 180063750 C T CEP350 Missense_Mutation p.P2837L 0.09 probably_damaging(0.932) TCGA-D3-A8GM-06 1 180064735 180064735 C T CEP350 Silent p.F2863F 0.19 TCGA-D3-A8GM-06 1 180235590 180235590 G A LHX4 Silent p.K104K 0.17 TCGA-D3-A8GM-06 1 181705530 181705530 G A CACNA1E Missense_Mutation p.V1128M 0.65 deleterious(0.03) possibly_damaging(0.608) TCGA-D3-A8GM-06 1 181706719 181706719 C T CACNA1E Silent p.L1161L 0.47 TCGA-D3-A8GM-06 1 181726211 181726211 C T CACNA1E Silent p.F1426F 0.46 TCGA-D3-A8GM-06 1 181741317 181741317 G A CACNA1E Missense_Mutation p.D1697N 0.17 tolerated(0.08) possibly_damaging(0.831) TCGA-D3-A8GM-06 1 182368977 182368977 C T TEDDM1 Missense_Mutation p.G215E 0.53 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A8GM-06 1 182555654 182555654 A G RNASEL Silent p.F96F 0.53 TCGA-D3-A8GM-06 1 182845638 182845638 C T DHX9 Missense_Mutation p.R696C 0.49 deleterious(0) probably_damaging(0.956) TCGA-D3-A8GM-06 1 183086513 183086513 C T LAMC1 Silent p.S541S 0.15 TCGA-D3-A8GM-06 1 183177183 183177183 C A LAMC2 Missense_Mutation p.P83T 0.04 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 183209452 183209452 A C LAMC2 Missense_Mutation p.D1085A 0.57 deleterious(0.03) benign(0.066) TCGA-D3-A8GM-06 1 183543651 183543651 T C NCF2 Missense_Mutation p.K158E 0.47 tolerated(0.11) benign(0.064) TCGA-D3-A8GM-06 1 183559373 183559373 G A NCF2 Missense_Mutation p.A31V 0.48 deleterious(0.01) benign(0.033) TCGA-D3-A8GM-06 1 183711292 183711292 G A RGL1 5'UTR 0.15 TCGA-D3-A8GM-06 1 183869322 183869322 C T RGL1 Silent p.F458F 0.54 TCGA-D3-A8GM-06 1 183891388 183891388 C T RGL1 Silent p.I714I 0.50 TCGA-D3-A8GM-06 1 184853765 184853765 A G FAM129A Splice_Site p.X201_splice 0.36 TCGA-D3-A8GM-06 1 185259828 185259828 C T SWT1 Missense_Mutation p.R866C 0.29 tolerated(0.2) benign(0.007) TCGA-D3-A8GM-06 1 186276194 186276194 C T PRG4 Missense_Mutation p.P448L 0.12 unknown(0) TCGA-D3-A8GM-06 1 186302464 186302464 G A TPR Missense_Mutation p.R1749C 0.24 possibly_damaging(0.689) TCGA-D3-A8GM-06 1 18704828 18704828 C T IGSF21 3'UTR 0.79 TCGA-D3-A8GM-06 1 18809784 18809784 C T KLHDC7A Missense_Mutation p.P770L 0.50 tolerated(0.27) unknown(0) TCGA-D3-A8GM-06 1 190067720 190067720 C T BRINP3 Missense_Mutation p.G577R 0.49 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 190067964 190067964 G A BRINP3 Silent p.L495L 0.08 TCGA-D3-A8GM-06 1 19018378 19018378 C T PAX7 Silent p.T239T 0.29 TCGA-D3-A8GM-06 1 19166668 19166668 C T TAS1R2 Missense_Mutation p.A649T 0.51 tolerated(1) benign(0.009) TCGA-D3-A8GM-06 1 193150306 193150306 T C B3GALT2 Silent p.G129G 0.13 TCGA-D3-A8GM-06 1 196451471 196451471 C T KCNT2 Nonsense_Mutation p.W105* 0.45 TCGA-D3-A8GM-06 1 196459060 196459060 C T KCNT2 Silent p.R61R 0.41 TCGA-D3-A8GM-06 1 196697552 196697552 C T CFH Silent p.F771F 0.16 TCGA-D3-A8GM-06 1 196794742 196794742 C T CFHR1 Missense_Mutation p.S65L 0.54 deleterious(0.03) benign(0.063) TCGA-D3-A8GM-06 1 196874292 196874292 C T CFHR4 Missense_Mutation p.S103F 0.13 tolerated(0.12) probably_damaging(0.986) TCGA-D3-A8GM-06 1 196919993 196919993 T G CFHR2 Missense_Mutation p.F89V 0.54 tolerated(0.07) probably_damaging(0.998) TCGA-D3-A8GM-06 1 196953214 196953214 A G CFHR5 Missense_Mutation p.N126S 0.06 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 1 196963210 196963210 A T CFHR5 Missense_Mutation p.K144I 0.17 deleterious(0) benign(0.36) TCGA-D3-A8GM-06 1 197021797 197021797 C T F13B Missense_Mutation p.G508R 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 197073154 197073154 G A ASPM Missense_Mutation p.L1743F 0.49 tolerated(0.07) possibly_damaging(0.768) TCGA-D3-A8GM-06 1 197073886 197073886 G A ASPM Missense_Mutation p.R1499W 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 197112130 197112130 C T ASPM Missense_Mutation p.E418K 0.50 tolerated(0.48) benign(0.001) TCGA-D3-A8GM-06 1 197390934 197390934 C T CRB1 Missense_Mutation p.S659L 0.10 tolerated(0.22) possibly_damaging(0.631) TCGA-D3-A8GM-06 1 197876282 197876282 C T C1orf53 Missense_Mutation p.P124S 0.09 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 1 198225592 198225592 C T NEK7 Intron 0.13 TCGA-D3-A8GM-06 1 198288587 198288587 C T NEK7 Nonsense_Mutation p.R282* 0.07 TCGA-D3-A8GM-06 1 200522779 200522779 T C KIF14 Missense_Mutation p.R1562G 0.43 tolerated(0.33) benign(0.002) TCGA-D3-A8GM-06 1 201009442 201009442 G A CACNA1S Missense_Mutation p.H1763Y 0.10 tolerated_low_confidence(1) benign(0.055) TCGA-D3-A8GM-06 1 201184859 201184859 C T IGFN1 Missense_Mutation p.T3063M 0.39 probably_damaging(0.996) TCGA-D3-A8GM-06 1 201190757 201190757 A G IGFN1 Missense_Mutation p.T3362A 0.31 probably_damaging(0.989) TCGA-D3-A8GM-06 1 201197690 201197690 C T IGFN1 3'UTR 0.40 TCGA-D3-A8GM-06 1 201351412 201351412 C T LAD1 Missense_Mutation p.G506R 0.18 tolerated(1) benign(0.081) TCGA-D3-A8GM-06 1 201356018 201356018 C T LAD1 Silent p.E157E 0.48 TCGA-D3-A8GM-06 1 202104348 202104348 C T ARL8A Missense_Mutation p.M147I 0.09 tolerated(0.06) benign(0.008) TCGA-D3-A8GM-06 1 202850130 202850130 G A RABIF Silent p.A116A 0.15 TCGA-D3-A8GM-06 1 203194194 203194194 C T CHIT1 Nonsense_Mutation p.W99* 0.61 TCGA-D3-A8GM-06 1 203672847 203672847 G A ATP2B4 Silent p.E335E 0.46 TCGA-D3-A8GM-06 1 204170826 204170826 G A GOLT1A Silent p.I77I 0.17 TCGA-D3-A8GM-06 1 204399145 204399145 G A PIK3C2B Silent p.I1434I 0.58 TCGA-D3-A8GM-06 1 204423763 204423763 G A PIK3C2B Intron 0.19 TCGA-D3-A8GM-06 1 204588306 204588306 G A LRRN2 Missense_Mutation p.P272L 0.20 deleterious(0) possibly_damaging(0.48) TCGA-D3-A8GM-06 1 204923379 204923379 G A NFASC Silent p.R93R 0.44 TCGA-D3-A8GM-06 1 205028807 205028807 G A CNTN2 Missense_Mutation p.G265E 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 205039604 205039604 G A CNTN2 Missense_Mutation p.E828K 0.48 deleterious(0.01) probably_damaging(0.969) TCGA-D3-A8GM-06 1 205884026 205884026 C T SLC26A9 Silent p.R886R 0.49 TCGA-D3-A8GM-06 1 205896624 205896624 G C SLC26A9 Missense_Mutation p.S404C 0.64 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GM-06 1 206225224 206225224 C T AVPR1B Silent p.L262L 0.13 TCGA-D3-A8GM-06 1 206243567 206243567 C T C1orf186 5'UTR 0.43 TCGA-D3-A8GM-06 1 206619581 206619581 T C SRGAP2 Missense_Mutation p.F593L 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 1 206634577 206634577 C T SRGAP2 Missense_Mutation p.R924C 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GM-06 1 206653239 206653239 C T IKBKE Missense_Mutation p.P404S 0.22 tolerated(0.22) probably_damaging(0.938) TCGA-D3-A8GM-06 1 206653240 206653240 C T IKBKE Missense_Mutation p.P404L 0.23 deleterious(0) possibly_damaging(0.887) TCGA-D3-A8GM-06 1 207109156 207109156 C T PIGR Silent p.T351T 0.57 TCGA-D3-A8GM-06 1 207135684 207135684 G A FCAMR Missense_Mutation p.P176S 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-D3-A8GM-06 1 207642169 207642169 G A CR2 Missense_Mutation p.R220Q 0.19 tolerated(0.98) benign(0.004) TCGA-D3-A8GM-06 1 207737326 207737326 C A CR1 Missense_Mutation p.A1235D 0.16 tolerated(0.08) probably_damaging(0.911) TCGA-D3-A8GM-06 1 208215566 208215566 G A PLXNA2 Missense_Mutation p.S1388L 0.14 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GM-06 1 2082272 2082272 C T PRKCZ Missense_Mutation p.S244F 0.50 deleterious(0.01) possibly_damaging(0.458) TCGA-D3-A8GM-06 1 209905861 209905861 G A HSD11B1 Missense_Mutation p.E200K 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 20992748 20992748 C T KIF17 Missense_Mutation p.R957Q 0.51 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GM-06 1 209961934 209961934 C T IRF6 Missense_Mutation p.R412Q 0.18 tolerated(0.34) possibly_damaging(0.77) TCGA-D3-A8GM-06 1 211840355 211840355 G A NEK2 Intron 0.48 TCGA-D3-A8GM-06 1 214816487 214816487 T C CENPF Silent p.Y1602Y 0.45 TCGA-D3-A8GM-06 1 216062379 216062379 G A USH2A Missense_Mutation p.P2538S 0.52 possibly_damaging(0.718) TCGA-D3-A8GM-06 1 216680237 216680237 C T ESRRG 3'UTR 0.15 TCGA-D3-A8GM-06 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.42 TCGA-D3-A8GM-06 1 220440277 220440277 G A RAB3GAP2 Intron 0.13 TCGA-D3-A8GM-06 1 221912377 221912377 T C DUSP10 Missense_Mutation p.D237G 0.19 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GM-06 1 222717011 222717011 G A HHIPL2 Missense_Mutation p.P281L 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 222717012 222717012 G A HHIPL2 Missense_Mutation p.P281S 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 223116481 223116481 C T DISP1 Missense_Mutation p.P106S 0.09 tolerated(0.61) benign(0.001) TCGA-D3-A8GM-06 1 223283654 223283654 G A TLR5 3'UTR 0.46 TCGA-D3-A8GM-06 1 223396633 223396633 C T SUSD4 Missense_Mutation p.E468K 0.21 tolerated(0.49) benign(0.005) TCGA-D3-A8GM-06 1 223441877 223441877 C T SUSD4 Missense_Mutation p.D168N 0.46 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GM-06 1 224378013 224378013 C T DEGS1 Missense_Mutation p.L273F 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 226034787 226034787 G A TMEM63A Missense_Mutation p.A793V 0.16 tolerated_low_confidence(0.11) benign(0.004) TCGA-D3-A8GM-06 1 226182977 226182977 A G SDE2 Silent p.G76G 0.13 TCGA-D3-A8GM-06 1 227204674 227204674 G A CDC42BPA Missense_Mutation p.R1530C 0.19 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 1 228003562 228003562 G A PRSS38 Missense_Mutation p.V49M 0.24 deleterious(0.04) possibly_damaging(0.759) TCGA-D3-A8GM-06 1 228480406 228480406 C T OBSCN Missense_Mutation p.R4025C 0.15 benign(0.001) TCGA-D3-A8GM-06 1 228487765 228487765 C T OBSCN Missense_Mutation p.R4553C 0.49 probably_damaging(0.993) TCGA-D3-A8GM-06 1 228491533 228491533 C T OBSCN Silent p.D4632D 0.12 TCGA-D3-A8GM-06 1 228559658 228559658 C T OBSCN Missense_Mutation p.S8017F 0.22 benign(0.083) TCGA-D3-A8GM-06 1 22928210 22928210 C T EPHA8 Silent p.T998T 0.60 TCGA-D3-A8GM-06 1 231064730 231064730 G A TTC13 Silent p.F470F 0.53 TCGA-D3-A8GM-06 1 231360116 231360116 C T C1orf131 Missense_Mutation p.R264Q 0.20 tolerated(0.2) benign(0.036) TCGA-D3-A8GM-06 1 23239035 23239035 A T EPHB2 Missense_Mutation p.E933V 0.44 deleterious(0) possibly_damaging(0.462) TCGA-D3-A8GM-06 1 232649718 232649718 G A SIPA1L2 Silent p.S456S 0.52 TCGA-D3-A8GM-06 1 233134893 233134893 G A PCNXL2 Missense_Mutation p.T1854I 0.52 deleterious(0.02) benign(0.028) TCGA-D3-A8GM-06 1 233394719 233394719 C T PCNXL2 Missense_Mutation p.E297K 0.14 tolerated_low_confidence(0.12) benign(0.007) TCGA-D3-A8GM-06 1 233394920 233394920 C T PCNXL2 Missense_Mutation p.E230K 0.14 tolerated_low_confidence(0.1) benign(0.075) TCGA-D3-A8GM-06 1 233397867 233397867 C T PCNXL2 Missense_Mutation p.R135Q 0.57 tolerated(0.31) benign(0.003) TCGA-D3-A8GM-06 1 233514869 233514869 C T MLK4 Missense_Mutation p.P706L 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 2340220 2340220 G A PEX10 Missense_Mutation p.R91C 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 234458921 234458921 G A SLC35F3 Missense_Mutation p.G469S 0.54 tolerated(0.27) benign(0.005) TCGA-D3-A8GM-06 1 235926093 235926093 A G LYST Silent p.S2060S 0.17 TCGA-D3-A8GM-06 1 235993615 235993615 C T LYST Missense_Mutation p.E35K 0.47 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D3-A8GM-06 1 236157048 236157048 G A NID1 Silent p.Y884Y 0.54 TCGA-D3-A8GM-06 1 236724531 236724531 T G HEATR1 Missense_Mutation p.E1547A 0.55 tolerated(0.17) benign(0.066) TCGA-D3-A8GM-06 1 236738070 236738070 G A HEATR1 Missense_Mutation p.S1073F 0.54 deleterious(0.03) benign(0.27) TCGA-D3-A8GM-06 1 23696013 23696013 C T C1orf213 Missense_Mutation p.L75F 0.33 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D3-A8GM-06 1 23720479 23720479 C T TCEA3 Missense_Mutation p.V238M 0.16 deleterious(0) benign(0.271) TCGA-D3-A8GM-06 1 238045833 238045833 C T ZP4 Silent p.S504S 0.11 TCGA-D3-A8GM-06 1 238051666 238051666 C T ZP4 Missense_Mutation p.G182E 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 23885948 23885948 G A ID3 5'UTR 0.24 TCGA-D3-A8GM-06 1 240072444 240072444 A - CHRM3 Frame_Shift_Del p.K567Rfs*31 0.64 TCGA-D3-A8GM-06 1 24018298 24018298 C T RPL11 5'UTR 0.40 TCGA-D3-A8GM-06 1 240637460 240637460 G A FMN2 3'UTR 0.42 TCGA-D3-A8GM-06 1 241901789 241901789 C T WDR64 Missense_Mutation p.T430M 0.18 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GM-06 1 24201401 24201401 C T CNR2 Missense_Mutation p.R236Q 0.37 tolerated(0.23) possibly_damaging(0.908) TCGA-D3-A8GM-06 1 24402757 24402757 C T MYOM3 Missense_Mutation p.D865N 0.41 tolerated(0.13) probably_damaging(0.971) TCGA-D3-A8GM-06 1 24413271 24413271 G A MYOM3 Missense_Mutation p.P554L 0.49 deleterious(0.01) possibly_damaging(0.842) TCGA-D3-A8GM-06 1 244574592 244574592 G A ADSS Missense_Mutation p.P439S 0.16 deleterious(0.01) probably_damaging(0.916) TCGA-D3-A8GM-06 1 24746100 24746100 C T NIPAL3 Silent p.S21S 0.11 TCGA-D3-A8GM-06 1 247463753 247463753 G A ZNF496 3'UTR 0.27 TCGA-D3-A8GM-06 1 247588397 247588397 T C NLRP3 Missense_Mutation p.L551S 0.09 tolerated(0.79) benign(0.001) TCGA-D3-A8GM-06 1 247597513 247597513 C T NLRP3 Silent p.D812D 0.13 TCGA-D3-A8GM-06 1 247712385 247712385 T A GCSAML 5'Flank 0.46 TCGA-D3-A8GM-06 1 247737445 247737445 G A GCSAML Missense_Mutation p.E57K 0.53 deleterious(0.01) benign(0.139) TCGA-D3-A8GM-06 1 247751734 247751734 C T OR2G2 Nonsense_Mutation p.Q25* 0.10 TCGA-D3-A8GM-06 1 247752313 247752313 C T OR2G2 Silent p.L218L 0.47 TCGA-D3-A8GM-06 1 247769229 247769229 C T OR2G3 Silent p.L114L 0.18 TCGA-D3-A8GM-06 1 247835905 247835905 C T OR13G1 Missense_Mutation p.A147T 0.08 tolerated(0.39) benign(0.012) TCGA-D3-A8GM-06 1 247875867 247875867 C T OR6F1 Missense_Mutation p.S64N 0.47 deleterious(0.02) possibly_damaging(0.783) TCGA-D3-A8GM-06 1 248031148 248031148 G A TRIM58 Missense_Mutation p.G250D 0.49 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 1 248084496 248084496 C T OR2T8 Silent p.F59F 0.20 TCGA-D3-A8GM-06 1 248308571 248308571 G A OR2M5 Missense_Mutation p.G41E 0.17 deleterious(0.04) benign(0.033) TCGA-D3-A8GM-06 1 248344204 248344204 G A OR2M2 Missense_Mutation p.G306E 0.50 tolerated(0.16) benign(0.019) TCGA-D3-A8GM-06 1 248512262 248512262 G A OR14C36 Silent p.R62R 0.54 TCGA-D3-A8GM-06 1 248569916 248569916 C T OR2T1 Silent p.F207F 0.10 TCGA-D3-A8GM-06 1 24859642 24859642 A G RCAN3 Missense_Mutation p.I147V 0.29 deleterious(0.03) possibly_damaging(0.553) TCGA-D3-A8GM-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.17 TCGA-D3-A8GM-06 1 248652087 248652087 C T OR2T5 Silent p.F66F 0.22 TCGA-D3-A8GM-06 1 248722595 248722595 G A OR2T29 Silent p.F66F 0.23 TCGA-D3-A8GM-06 1 248789783 248789783 G A OR2T11 Missense_Mutation p.S216F 0.46 tolerated(0.26) benign(0.01) TCGA-D3-A8GM-06 1 249211536 249211536 G A PGBD2 Silent p.R251R 0.48 TCGA-D3-A8GM-06 1 249211538 249211538 T A PGBD2 Missense_Mutation p.M252K 0.48 deleterious(0) possibly_damaging(0.723) TCGA-D3-A8GM-06 1 25229125 25229125 G A RUNX3 Missense_Mutation p.R260C 0.39 tolerated(0.11) probably_damaging(0.98) TCGA-D3-A8GM-06 1 25633201 25633201 G A RHD Missense_Mutation p.V352I 0.75 tolerated(0.27) benign(0.003) TCGA-D3-A8GM-06 1 26510902 26510902 C T CNKSR1 Silent p.S337S 0.52 TCGA-D3-A8GM-06 1 26527515 26527515 C T CATSPER4 Silent p.I394I 0.32 TCGA-D3-A8GM-06 1 26644693 26644693 G A UBXN11 5'UTR 0.22 TCGA-D3-A8GM-06 1 26665835 26665835 G A AIM1L Missense_Mutation p.S223F 0.47 tolerated(0.43) benign(0.232) TCGA-D3-A8GM-06 1 26900593 26900593 C T RPS6KA1 Silent p.S712S 0.32 TCGA-D3-A8GM-06 1 27630215 27630215 C T WDTC1 Silent p.Y523Y 0.09 TCGA-D3-A8GM-06 1 27689233 27689233 G A MAP3K6 Missense_Mutation p.A385V 0.37 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 1 27874253 27874253 G A AHDC1 Silent p.S1458S 0.24 TCGA-D3-A8GM-06 1 28241154 28241154 C T RPA2 5'UTR 0.39 TCGA-D3-A8GM-06 1 28315104 28315104 G A EYA3 Silent p.L494L 0.33 TCGA-D3-A8GM-06 1 28792271 28792271 C T PHACTR4 Missense_Mutation p.S126L 0.21 tolerated(0.35) benign(0.012) TCGA-D3-A8GM-06 1 28833969 28833969 C T SNORA73B 5'Flank 0.48 TCGA-D3-A8GM-06 1 29185719 29185719 A G OPRD1 Missense_Mutation p.T161A 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A8GM-06 1 29606063 29606063 C T PTPRU Silent p.V553V 0.43 TCGA-D3-A8GM-06 1 29652324 29652324 C T PTPRU 3'Flank 0.50 TCGA-D3-A8GM-06 1 31437538 31437538 G A PUM1 Missense_Mutation p.S769F 0.37 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GM-06 1 31901904 31901904 C T SERINC2 Missense_Mutation p.S296F 0.31 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GM-06 1 32653694 32653694 G A TXLNA Missense_Mutation p.R246H 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 32745797 32745797 G A LCK Missense_Mutation p.R438H 0.27 deleterious(0) probably_damaging(0.922) TCGA-D3-A8GM-06 1 33058894 33058894 C T ZBTB8A Missense_Mutation p.S121F 0.45 probably_damaging(1) TCGA-D3-A8GM-06 1 3321331 3321331 G A PRDM16 Missense_Mutation p.E305K 0.50 tolerated(0.05) possibly_damaging(0.85) TCGA-D3-A8GM-06 1 3328433 3328433 C T PRDM16 Silent p.L558L 0.44 TCGA-D3-A8GM-06 1 33402898 33402898 G A RNF19B Intron 0.51 TCGA-D3-A8GM-06 1 33560153 33560153 C T ADC Missense_Mutation p.H198Y 0.17 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 1 33585790 33585790 C A ADC 3'UTR 0.08 TCGA-D3-A8GM-06 1 33613286 33613286 C T TRIM62 Missense_Mutation p.R307H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GM-06 1 33988937 33988937 G A CSMD2 Silent p.F3349F 0.32 TCGA-D3-A8GM-06 1 33999454 33999454 G A CSMD2 Silent p.S3167S 0.22 TCGA-D3-A8GM-06 1 34002650 34002650 C T CSMD2 Missense_Mutation p.G3140E 0.26 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 1 34003113 34003113 G - CSMD2 Frame_Shift_Del p.P3099Lfs*26 0.31 TCGA-D3-A8GM-06 1 34015776 34015776 C T CSMD2 Splice_Site p.X2829_splice 0.39 TCGA-D3-A8GM-06 1 34174812 34174812 G A CSMD2 Silent p.S1111S 0.27 TCGA-D3-A8GM-06 1 34181923 34181923 G A CSMD2 Silent p.F1020F 0.39 TCGA-D3-A8GM-06 1 35452805 35452805 T C ZMYM6 Missense_Mutation p.E1293G 0.18 deleterious_low_confidence(0.03) benign(0.169) TCGA-D3-A8GM-06 1 35906575 35906575 G A KIAA0319L Intron 0.38 TCGA-D3-A8GM-06 1 36359347 36359347 G A AGO1 Silent p.E195E 0.39 TCGA-D3-A8GM-06 1 36492793 36492793 T C AGO3 Silent p.Y495Y 0.41 TCGA-D3-A8GM-06 1 36564717 36564717 C T COL8A2 Missense_Mutation p.E189K 0.52 tolerated(0.12) unknown(0) TCGA-D3-A8GM-06 1 36748169 36748170 - A THRAP3 Frame_Shift_Ins p.T4Nfs*45 0.33 TCGA-D3-A8GM-06 1 36748247 36748247 C T THRAP3 Missense_Mutation p.S28L 0.34 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 1 37270829 37270829 T C GRIK3 Missense_Mutation p.Y775C 0.31 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GM-06 1 38006340 38006340 G A SNIP1 Missense_Mutation p.P115L 0.33 tolerated(0.17) benign(0.004) TCGA-D3-A8GM-06 1 38082213 38082213 G A RSPO1 Missense_Mutation p.P77S 0.49 tolerated(0.63) benign(0.011) TCGA-D3-A8GM-06 1 38184469 38184469 C T EPHA10 Missense_Mutation p.D926N 0.26 deleterious(0.04) probably_damaging(0.992) TCGA-D3-A8GM-06 1 38227392 38227392 C T EPHA10 Missense_Mutation p.E179K 0.47 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A8GM-06 1 38265692 38265692 G A MANEAL Silent p.E397E 0.29 TCGA-D3-A8GM-06 1 38287812 38287812 G A MTF1 Missense_Mutation p.P583L 0.19 tolerated(0.24) possibly_damaging(0.536) TCGA-D3-A8GM-06 1 38287813 38287813 G A MTF1 Missense_Mutation p.P583S 0.19 tolerated(0.28) benign(0.334) TCGA-D3-A8GM-06 1 39806511 39806511 C T MACF1 Intron 0.43 TCGA-D3-A8GM-06 1 39847821 39847821 C T MACF1 Silent p.V2553V 0.44 TCGA-D3-A8GM-06 1 39879036 39879037 - C KIAA0754 Frame_Shift_Ins p.E901Rfs*190 0.40 TCGA-D3-A8GM-06 1 39879750 39879750 A G KIAA0754 Silent p.A1135A 0.21 TCGA-D3-A8GM-06 1 39951375 39951375 C T MACF1 Missense_Mutation p.S5401F 0.18 possibly_damaging(0.789) TCGA-D3-A8GM-06 1 40027805 40027805 C T PABPC4 Silent p.L611L 0.37 TCGA-D3-A8GM-06 1 40034570 40034570 G A PABPC4 Silent p.I260I 0.30 TCGA-D3-A8GM-06 1 41450579 41450579 G A CTPS1 Missense_Mutation p.D85N 0.26 deleterious(0.05) benign(0.35) TCGA-D3-A8GM-06 1 41978648 41978648 G A HIVEP3 Missense_Mutation p.R2082W 0.16 benign(0.001) TCGA-D3-A8GM-06 1 42898920 42898920 G A ZMYND12 Missense_Mutation p.S290L 0.36 deleterious(0.01) benign(0.169) TCGA-D3-A8GM-06 1 43002213 43002213 G A CCDC30 Missense_Mutation p.E20K 0.27 tolerated(0.2) benign(0.002) TCGA-D3-A8GM-06 1 43675605 43675605 C T WDR65 Silent p.S649S 0.31 TCGA-D3-A8GM-06 1 43772651 43772651 C T TIE1 Missense_Mutation p.R209W 0.42 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 1 43773549 43773549 T C TIE1 Silent p.G332G 0.33 TCGA-D3-A8GM-06 1 43784977 43784977 C T TIE1 Silent p.F998F 0.24 TCGA-D3-A8GM-06 1 43868903 43868903 G A SZT2 Missense_Mutation p.R28Q 0.18 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GM-06 1 43891165 43891165 A G SZT2 Missense_Mutation p.N889S 0.47 tolerated(0.16) possibly_damaging(0.561) TCGA-D3-A8GM-06 1 44019167 44019167 A G PTPRF Silent p.K32K 0.13 TCGA-D3-A8GM-06 1 44423913 44423913 G T IPO13 Splice_Site p.X575_splice 0.06 TCGA-D3-A8GM-06 1 45079881 45079881 T C RNF220 Missense_Mutation p.C224R 0.45 deleterious(0) probably_damaging(0.915) TCGA-D3-A8GM-06 1 45250833 45250833 A G BEST4 Missense_Mutation p.Y287H 0.25 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GM-06 1 45253085 45253085 C T BEST4 Missense_Mutation p.C69Y 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 45271310 45271310 G A PLK3 Missense_Mutation p.R634H 0.49 tolerated(0.37) unknown(0) TCGA-D3-A8GM-06 1 45316653 45316653 G A EIF2B3 Silent p.I443I 0.28 TCGA-D3-A8GM-06 1 45797837 45797837 C A MUTYH Splice_Site p.X308_splice 0.12 TCGA-D3-A8GM-06 1 45810864 45810864 C T TESK2 Missense_Mutation p.R455H 0.25 tolerated(0.34) benign(0.009) TCGA-D3-A8GM-06 1 45923441 45923441 C T TESK2 Missense_Mutation p.R6Q 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-D3-A8GM-06 1 46159032 46159033 - C TMEM69 Frame_Shift_Ins p.C69Lfs*4 0.08 TCGA-D3-A8GM-06 1 46487673 46487673 G A MAST2 Missense_Mutation p.A448T 0.12 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-D3-A8GM-06 1 46751111 46751111 G A LRRC41 Missense_Mutation p.S473F 0.30 deleterious(0) possibly_damaging(0.683) TCGA-D3-A8GM-06 1 46872021 46872021 C T FAAH Missense_Mutation p.P311L 0.41 deleterious(0.02) benign(0.055) TCGA-D3-A8GM-06 1 47051562 47051562 G A MKNK1 Intron 0.43 TCGA-D3-A8GM-06 1 47348956 47348956 C T CYP4Z2P RNA 0.32 TCGA-D3-A8GM-06 1 47607859 47607859 C T CYP4A22 Silent p.I154I 0.47 TCGA-D3-A8GM-06 1 47716915 47716915 G A STIL Missense_Mutation p.P1254S 0.38 tolerated(0.07) benign(0.094) TCGA-D3-A8GM-06 1 50642815 50642815 A C ELAVL4 Missense_Mutation p.K119T 0.39 deleterious(0.03) possibly_damaging(0.615) TCGA-D3-A8GM-06 1 51912775 51912775 C T EPS15 Nonsense_Mutation p.W218* 0.51 TCGA-D3-A8GM-06 1 52838974 52838974 A G ORC1 Missense_Mutation p.V822A 0.13 tolerated(0.06) possibly_damaging(0.759) TCGA-D3-A8GM-06 1 53716524 53716524 G A LRP8 Silent p.A838A 0.37 TCGA-D3-A8GM-06 1 54476018 54476018 A G LDLRAD1 Missense_Mutation p.Y136H 0.14 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GM-06 1 54513075 54513076 - A TMEM59 Intron 0.26 TCGA-D3-A8GM-06 1 54666050 54666050 C T MRPL37 Missense_Mutation p.P45L 0.52 tolerated(0.06) benign(0.002) TCGA-D3-A8GM-06 1 55144935 55144935 G A MROH7 Splice_Site p.X684_splice 0.24 TCGA-D3-A8GM-06 1 55148438 55148438 G A MROH7 Missense_Mutation p.E831K 0.24 tolerated(1) benign(0) TCGA-D3-A8GM-06 1 55277780 55277780 G A C1orf177 Missense_Mutation p.R227Q 0.35 tolerated(0.15) benign(0.035) TCGA-D3-A8GM-06 1 55474256 55474256 C T BSND Silent p.L306L 0.38 TCGA-D3-A8GM-06 1 55509666 55509666 C T PCSK9 Missense_Mutation p.P120S 0.36 tolerated(0.09) benign(0.281) TCGA-D3-A8GM-06 1 55534767 55534767 G A USP24 Missense_Mutation p.P2605L 0.22 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D3-A8GM-06 1 55537533 55537533 G A USP24 Missense_Mutation p.S2585L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-D3-A8GM-06 1 57158141 57158141 G A PRKAA2 Silent p.L147L 0.28 TCGA-D3-A8GM-06 1 57185725 57185725 C T C1orf168 Missense_Mutation p.G712E 0.35 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GM-06 1 57285059 57285059 G A C1orf168 5'Flank 0.30 TCGA-D3-A8GM-06 1 57411499 57411499 C T C8B Missense_Mutation p.R367K 0.51 tolerated(1) benign(0.003) TCGA-D3-A8GM-06 1 57420421 57420421 C T C8B Silent p.R157R 0.38 TCGA-D3-A8GM-06 1 57499228 57499228 C T DAB1 Intron 0.22 TCGA-D3-A8GM-06 1 57537221 57537221 T A DAB1 Nonsense_Mutation p.K178* 0.23 TCGA-D3-A8GM-06 1 58971763 58971763 C T OMA1 Missense_Mutation p.R445Q 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 1 59141166 59141166 G A MYSM1 Nonsense_Mutation p.Q493* 0.46 TCGA-D3-A8GM-06 1 6158671 6158671 C T KCNAB2 3'UTR 0.55 TCGA-D3-A8GM-06 1 62613990 62613990 C A INADL Missense_Mutation p.A1769D 0.05 deleterious(0.01) benign(0) TCGA-D3-A8GM-06 1 64034039 64034039 T C EFCAB7 Missense_Mutation p.V519A 0.06 deleterious(0.02) benign(0.008) TCGA-D3-A8GM-06 1 65864544 65864544 G A DNAJC6 Nonsense_Mutation p.W696* 0.23 TCGA-D3-A8GM-06 1 66378979 66378979 G A PDE4B 5'UTR 0.52 TCGA-D3-A8GM-06 1 67895833 67895833 C T SERBP1 Missense_Mutation p.A51T 0.39 tolerated(0.44) benign(0.016) TCGA-D3-A8GM-06 1 68512503 68512503 C A DIRAS3 Nonsense_Mutation p.E160* 0.44 TCGA-D3-A8GM-06 1 68512644 68512644 C T DIRAS3 Missense_Mutation p.V113I 0.12 tolerated(1) benign(0.024) TCGA-D3-A8GM-06 1 68905004 68905004 A T RPE65 Missense_Mutation p.F243Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 1 70716496 70716496 C A SRSF11 3'UTR 0.16 TCGA-D3-A8GM-06 1 74575134 74575134 C T LRRIQ3 Missense_Mutation p.D271N 0.24 tolerated(0.16) benign(0.063) TCGA-D3-A8GM-06 1 74716429 74716429 A G FPGT-TNNI3K Silent p.T217T 0.09 TCGA-D3-A8GM-06 1 75037323 75037323 C T C1orf173 Silent p.R1357R 0.32 TCGA-D3-A8GM-06 1 75037779 75037779 C T C1orf173 Silent p.K1205K 0.29 TCGA-D3-A8GM-06 1 75175830 75175830 G A CRYZ Silent p.A194A 0.42 TCGA-D3-A8GM-06 1 75672312 75672312 G A SLC44A5 Missense_Mutation p.P714S 0.40 tolerated(0.12) benign(0.004) TCGA-D3-A8GM-06 1 76378535 76378535 C T MSH4 Missense_Mutation p.P925L 0.43 tolerated_low_confidence(0.44) benign(0.001) TCGA-D3-A8GM-06 1 76878086 76878086 G A ST6GALNAC3 Missense_Mutation p.E203K 0.50 probably_damaging(0.998) TCGA-D3-A8GM-06 1 77528736 77528736 C T ST6GALNAC5 Missense_Mutation p.H286Y 0.34 probably_damaging(1) TCGA-D3-A8GM-06 1 77763341 77763341 C T AK5 Silent p.I171I 0.40 TCGA-D3-A8GM-06 1 78098792 78098792 G T ZZZ3 Missense_Mutation p.P83H 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A8GM-06 1 78194226 78194226 C A USP33 Missense_Mutation p.D328Y 0.25 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 1 78194228 78194228 C A USP33 Missense_Mutation p.S327I 0.25 deleterious(0) possibly_damaging(0.616) TCGA-D3-A8GM-06 1 79094080 79094080 T C IFI44L Splice_Site p.X160_splice 0.27 TCGA-D3-A8GM-06 1 82402461 82402461 C T LPHN2 Missense_Mutation p.P113S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GM-06 1 84412952 84412952 G A TTLL7 Missense_Mutation p.R121W 0.42 tolerated(0.18) possibly_damaging(0.849) TCGA-D3-A8GM-06 1 85403680 85403680 T A MCOLN2 Missense_Mutation p.Y399F 0.26 tolerated(1) probably_damaging(0.999) TCGA-D3-A8GM-06 1 85559221 85559221 C T WDR63 Missense_Mutation p.T313I 0.40 tolerated(0.1) benign(0.103) TCGA-D3-A8GM-06 1 85559222 85559222 C T WDR63 Silent p.T313T 0.39 TCGA-D3-A8GM-06 1 86591380 86591380 G A COL24A1 Silent p.I213I 0.27 TCGA-D3-A8GM-06 1 86934659 86934659 G A CLCA1 Missense_Mutation p.G2E 0.38 deleterious(0.05) benign(0.032) TCGA-D3-A8GM-06 1 86965770 86965770 T - CLCA1 3'UTR 0.42 TCGA-D3-A8GM-06 1 89401861 89401861 A T CCBL2 3'UTR 0.38 TCGA-D3-A8GM-06 1 89479070 89479070 G A GBP3 Silent p.L222L 0.21 TCGA-D3-A8GM-06 1 89575413 89575413 C T GBP2 Missense_Mutation p.D536N 0.21 tolerated(0.1) benign(0.007) TCGA-D3-A8GM-06 1 89578249 89578249 C T GBP2 Missense_Mutation p.G423E 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-D3-A8GM-06 1 90179128 90179128 G A LRRC8C Silent p.T333T 0.13 TCGA-D3-A8GM-06 1 9097592 9097592 A G SLC2A5 3'UTR 0.51 TCGA-D3-A8GM-06 1 91784758 91784758 C T HFM1 Missense_Mutation p.D897N 0.27 deleterious(0) possibly_damaging(0.898) TCGA-D3-A8GM-06 1 94140458 94140458 G A BCAR3 Missense_Mutation p.P10L 0.42 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-D3-A8GM-06 1 94476450 94476450 G A ABCA4 Silent p.L1874L 0.26 TCGA-D3-A8GM-06 1 94487493 94487493 G A ABCA4 Missense_Mutation p.S1561F 0.28 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 1 94528672 94528672 C T ABCA4 Missense_Mutation p.D586N 0.38 deleterious(0.02) probably_damaging(0.966) TCGA-D3-A8GM-06 1 94998734 94998734 C T F3 Missense_Mutation p.R168K 0.27 tolerated(0.31) benign(0.001) TCGA-D3-A8GM-06 1 98039370 98039370 G A DPYD Silent p.L429L 0.46 TCGA-D3-A8GM-06 20 10632895 10632895 A G JAG1 Missense_Mutation p.L297P 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 20 1115675 1115675 C T PSMF1 Intron 0.38 TCGA-D3-A8GM-06 20 11903721 11903721 G A BTBD3 Missense_Mutation p.A326T 0.41 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 20 13052978 13052978 G A SPTLC3 Nonsense_Mutation p.W126* 0.16 TCGA-D3-A8GM-06 20 1456919 1456919 G A SIRPB2 Silent p.L308L 0.08 TCGA-D3-A8GM-06 20 1552558 1552558 C T SIRPB1 Missense_Mutation p.G187R 0.45 tolerated(0.09) possibly_damaging(0.552) TCGA-D3-A8GM-06 20 16253756 16253756 G A KIF16B 3'UTR 0.26 TCGA-D3-A8GM-06 20 16488711 16488711 G A KIF16B Silent p.D197D 0.15 TCGA-D3-A8GM-06 20 17475514 17475514 C T BFSP1 Silent p.Q401Q 0.12 TCGA-D3-A8GM-06 20 17608260 17608260 G A RRBP1 Silent p.L506L 0.48 TCGA-D3-A8GM-06 20 17610507 17610507 C T RRBP1 Missense_Mutation p.D471N 0.17 tolerated(0.06) possibly_damaging(0.728) TCGA-D3-A8GM-06 20 18125820 18125820 T - CSRP2BP Intron 0.32 TCGA-D3-A8GM-06 20 18506554 18506554 C T SEC23B Missense_Mutation p.S271F 0.18 deleterious(0) probably_damaging(0.918) TCGA-D3-A8GM-06 20 18523755 18523755 G A SEC23B Missense_Mutation p.R535Q 0.07 deleterious(0.02) possibly_damaging(0.507) TCGA-D3-A8GM-06 20 18794791 18794791 C T SCP2D1 Missense_Mutation p.P111L 0.23 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A8GM-06 20 19665806 19665806 C T SLC24A3 Silent p.I375I 0.49 TCGA-D3-A8GM-06 20 19665825 19665825 G A SLC24A3 Missense_Mutation p.E382K 0.10 tolerated(0.07) benign(0.056) TCGA-D3-A8GM-06 20 20023161 20023161 C T CRNKL1 Splice_Site p.X486_splice 0.39 TCGA-D3-A8GM-06 20 20150007 20150007 G A C20orf26 Missense_Mutation p.E430K 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A8GM-06 20 20278923 20278923 G A C20orf26 Silent p.R1105R 0.46 TCGA-D3-A8GM-06 20 2290833 2290833 C T TGM3 Missense_Mutation p.P64L 0.14 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GM-06 20 23473643 23473643 G A CST8 Missense_Mutation p.D94N 0.40 tolerated(0.45) benign(0.001) TCGA-D3-A8GM-06 20 23615954 23615954 C T CST3 Silent p.T98T 0.11 TCGA-D3-A8GM-06 20 2375851 2375851 T A TGM6 Missense_Mutation p.S65T 0.74 deleterious(0.03) benign(0.377) TCGA-D3-A8GM-06 20 23804658 23804658 T A CST2 Nonstop_Mutation p.*142Lext*79 0.16 TCGA-D3-A8GM-06 20 2443295 2443295 G A SNRPB Silent p.P224P 0.61 TCGA-D3-A8GM-06 20 24524126 24524126 G A SYNDIG1 Silent p.G131G 0.14 TCGA-D3-A8GM-06 20 2464529 2464529 G A ZNF343 Nonsense_Mutation p.R360* 0.25 TCGA-D3-A8GM-06 20 24646073 24646073 G A SYNDIG1 Missense_Mutation p.G237E 0.43 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 20 2591073 2591073 C T TMC2 Silent p.I474I 0.41 TCGA-D3-A8GM-06 20 2636289 2636289 G T NOP56 Missense_Mutation p.S269I 0.13 deleterious(0.04) benign(0.105) TCGA-D3-A8GM-06 20 2638659 2638662 TCTT - NOP56 Frame_Shift_Del p.F503Pfs*14 0.18 TCGA-D3-A8GM-06 20 2688624 2688624 C T EBF4 Missense_Mutation p.P145L 0.30 deleterious(0.02) benign(0.148) TCGA-D3-A8GM-06 20 2688625 2688625 C T EBF4 Silent p.P145P 0.30 TCGA-D3-A8GM-06 20 2816291 2816291 G A PCED1A Silent p.P394P 0.20 TCGA-D3-A8GM-06 20 29847273 29847273 C T DEFB115 Silent p.I35I 0.15 TCGA-D3-A8GM-06 20 29956466 29956466 C T DEFB118 Silent p.L5L 0.12 TCGA-D3-A8GM-06 20 29978284 29978284 C T DEFB119 Translation_Start_Site p.M1? 0.16 deleterious(0) unknown(0) TCGA-D3-A8GM-06 20 3001963 3001963 C T PTPRA Silent p.C350C 0.44 TCGA-D3-A8GM-06 20 3003455 3003455 G A PTPRA Silent p.Q483Q 0.53 TCGA-D3-A8GM-06 20 30038025 30038025 G A DEFB123 3'UTR 0.16 TCGA-D3-A8GM-06 20 30584813 30584813 C T XKR7 Silent p.F431F 0.15 TCGA-D3-A8GM-06 20 30720847 30720847 C T TM9SF4 Missense_Mutation p.S16F 0.40 tolerated(0.7) benign(0.068) TCGA-D3-A8GM-06 20 30898823 30898823 C T KIF3B Missense_Mutation p.R415W 0.70 deleterious(0.03) benign(0.317) TCGA-D3-A8GM-06 20 31604886 31604886 T G BPIFB2 Missense_Mutation p.N185K 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 20 31763283 31763283 G A BPIFA2 Missense_Mutation p.D161N 0.48 tolerated(0.15) possibly_damaging(0.571) TCGA-D3-A8GM-06 20 31768381 31768381 G A BPIFA2 3'UTR 0.18 TCGA-D3-A8GM-06 20 32212802 32212802 C T CBFA2T2 Missense_Mutation p.R318C 0.19 deleterious(0.01) benign(0.12) TCGA-D3-A8GM-06 20 32247504 32247504 G A NECAB3 Silent p.L226L 0.53 TCGA-D3-A8GM-06 20 32328774 32328774 C T ZNF341 Missense_Mutation p.P33L 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GM-06 20 33433164 33433164 C T GGT7 Silent p.R652R 0.16 TCGA-D3-A8GM-06 20 33508836 33508836 G A ACSS2 Missense_Mutation p.V404M 0.04 tolerated(0.11) benign(0.107) TCGA-D3-A8GM-06 20 33588326 33588326 C T MYH7B Missense_Mutation p.A1713V 0.56 benign(0.164) TCGA-D3-A8GM-06 20 33875191 33875191 C T FAM83C Missense_Mutation p.R464Q 0.14 tolerated_low_confidence(0.16) benign(0.018) TCGA-D3-A8GM-06 20 33875216 33875216 G A FAM83C Missense_Mutation p.H456Y 0.51 deleterious_low_confidence(0) benign(0.124) TCGA-D3-A8GM-06 20 34082481 34082481 C T CEP250 Missense_Mutation p.A1055V 0.38 benign(0.393) TCGA-D3-A8GM-06 20 34082482 34082482 C T CEP250 Silent p.A1055A 0.38 TCGA-D3-A8GM-06 20 34770233 34770233 C T EPB41L1 Missense_Mutation p.P177L 0.49 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 20 34773087 34773087 G C EPB41L1 Silent p.L205L 0.14 TCGA-D3-A8GM-06 20 34797774 34797774 G A EPB41L1 Missense_Mutation p.S678N 0.33 tolerated(0.42) benign(0.03) TCGA-D3-A8GM-06 20 35060231 35060231 G A DLGAP4 Silent p.T37T 0.13 TCGA-D3-A8GM-06 20 35317179 35317179 A G NDRG3 Silent p.D34D 0.17 TCGA-D3-A8GM-06 20 35444523 35444523 G A SOGA1 Missense_Mutation p.S441L 0.56 deleterious(0) possibly_damaging(0.894) TCGA-D3-A8GM-06 20 35467721 35467721 G A SOGA1 Silent p.L271L 0.62 TCGA-D3-A8GM-06 20 3556482 3556482 C T ATRN Missense_Mutation p.H701Y 0.21 tolerated(0.15) benign(0.005) TCGA-D3-A8GM-06 20 35690618 35690618 C T RBL1 Missense_Mutation p.E318K 0.51 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GM-06 20 36767959 36767959 G A TGM2 Silent p.A399A 0.09 TCGA-D3-A8GM-06 20 36956029 36956029 A C BPI Silent p.R405R 0.17 TCGA-D3-A8GM-06 20 3739228 3739228 C T C20orf27 Silent p.S64S 0.16 TCGA-D3-A8GM-06 20 37580765 37580765 C T FAM83D Nonsense_Mutation p.R484* 0.44 TCGA-D3-A8GM-06 20 37652380 37652380 T C DHX35 Silent p.T547T 0.50 TCGA-D3-A8GM-06 20 3846418 3846418 C A MAVS Nonsense_Mutation p.S416* 0.62 TCGA-D3-A8GM-06 20 3888920 3888920 C T PANK2 Missense_Mutation p.L326F 0.13 tolerated(0.7) benign(0.361) TCGA-D3-A8GM-06 20 40122200 40122200 A G CHD6 Missense_Mutation p.V431A 0.19 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 20 40714447 40714447 G A PTPRT Missense_Mutation p.P1298L 0.17 tolerated(0.21) benign(0.258) TCGA-D3-A8GM-06 20 40770608 40770608 G A PTPRT Missense_Mutation p.T906I 0.48 tolerated(0.23) benign(0.256) TCGA-D3-A8GM-06 20 42199665 42199665 G A SGK2 Missense_Mutation p.D219N 0.18 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GM-06 20 42354870 42354870 C T GTSF1L 3'UTR 0.14 TCGA-D3-A8GM-06 20 43386779 43386779 C T RIMS4 Missense_Mutation p.D96N 0.09 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D3-A8GM-06 20 43738542 43738542 C T WFDC5 3'UTR 0.15 TCGA-D3-A8GM-06 20 43752809 43752809 C T WFDC12 Silent p.R59R 0.20 TCGA-D3-A8GM-06 20 43804764 43804764 C T PI3 Silent p.F114F 0.56 TCGA-D3-A8GM-06 20 43836056 43836056 C T SEMG1 Missense_Mutation p.P40S 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 20 43837162 43837162 C T SEMG1 Silent p.G408G 0.21 TCGA-D3-A8GM-06 20 43851450 43851450 C T SEMG2 Missense_Mutation p.P393S 0.54 tolerated(0.09) probably_damaging(0.996) TCGA-D3-A8GM-06 20 43922590 43922590 G A MATN4 Nonsense_Mutation p.Q549* 0.45 TCGA-D3-A8GM-06 20 43927163 43927163 G A MATN4 Missense_Mutation p.P358L 0.16 probably_damaging(0.996) TCGA-D3-A8GM-06 20 43932983 43932983 C T MATN4 Silent p.A176A 0.45 TCGA-D3-A8GM-06 20 44003725 44003725 C T TP53TG5 Missense_Mutation p.R241H 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 20 44004255 44004255 G A TP53TG5 Intron 0.45 TCGA-D3-A8GM-06 20 44108349 44108349 C T WFDC2 Intron 0.18 TCGA-D3-A8GM-06 20 44190786 44190786 C T WFDC8 Silent p.L33L 0.55 TCGA-D3-A8GM-06 20 44330757 44330757 G A WFDC13 5'UTR 0.55 TCGA-D3-A8GM-06 20 44505759 44505759 T G ZSWIM3 Missense_Mutation p.S188A 0.46 tolerated(0.17) probably_damaging(0.911) TCGA-D3-A8GM-06 20 44515201 44515201 G A SPATA25 Silent p.P213P 0.49 TCGA-D3-A8GM-06 20 44580805 44580805 C T ZNF335 Missense_Mutation p.R1057H 0.15 tolerated(0.24) benign(0.001) TCGA-D3-A8GM-06 20 44640922 44640922 G C MMP9 Missense_Mutation p.D382H 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 20 44670039 44670039 G A SLC12A5 Missense_Mutation p.G332E 0.20 tolerated(0.5) benign(0.012) TCGA-D3-A8GM-06 20 45131203 45131203 G A ZNF334 Missense_Mutation p.H259Y 0.49 tolerated(0.15) possibly_damaging(0.672) TCGA-D3-A8GM-06 20 45131252 45131252 A G ZNF334 Silent p.C242C 0.20 TCGA-D3-A8GM-06 20 45947854 45947854 T C AL031666.2 Missense_Mutation p.Y164H 0.50 unknown(0) TCGA-D3-A8GM-06 20 46265013 46265013 C T NCOA3 Missense_Mutation p.S628F 0.44 deleterious(0.04) benign(0.071) TCGA-D3-A8GM-06 20 4680122 4680122 G A PRNP Missense_Mutation p.G86S 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GM-06 20 4705197 4705197 G A PRND 5'UTR 0.10 TCGA-D3-A8GM-06 20 47621711 47621711 C T ARFGEF2 Silent p.F1179F 0.50 TCGA-D3-A8GM-06 20 47649718 47649718 A G ARFGEF2 Silent p.A1780A 0.44 TCGA-D3-A8GM-06 20 47739678 47739678 G A STAU1 Missense_Mutation p.T306M 0.22 tolerated(0.48) benign(0.006) TCGA-D3-A8GM-06 20 47782590 47782590 G A STAU1 Missense_Mutation p.P50L 0.54 deleterious_low_confidence(0) benign(0.014) TCGA-D3-A8GM-06 20 47989472 47989472 C T KCNB1 3'UTR 0.75 TCGA-D3-A8GM-06 20 4842633 4842649 CGAGCCCAAAGAAGATC - SLC23A2 Frame_Shift_Del p.I524Pfs*41 0.45 TCGA-D3-A8GM-06 20 49218834 49218834 C T FAM65C Silent p.G474G 0.22 TCGA-D3-A8GM-06 20 50140626 50140626 C T NFATC2 Missense_Mutation p.A52T 0.49 tolerated(0.43) benign(0.001) TCGA-D3-A8GM-06 20 50241817 50241817 C T ATP9A Missense_Mutation p.E644K 0.15 deleterious(0.02) benign(0.05) TCGA-D3-A8GM-06 20 51872721 51872721 G A TSHZ2 Silent p.R908R 0.39 TCGA-D3-A8GM-06 20 5282842 5282842 G A PROKR2 Silent p.F333F 0.51 TCGA-D3-A8GM-06 20 53226946 53226946 G T DOK5 Missense_Mutation p.G207W 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 20 54824049 54824049 C T MC3R Silent p.I50I 0.14 TCGA-D3-A8GM-06 20 55025686 55025686 C T CASS4 Missense_Mutation p.P198L 0.54 tolerated(0.06) possibly_damaging(0.634) TCGA-D3-A8GM-06 20 56185357 56185357 G A ZBP1 Missense_Mutation p.P314L 0.54 deleterious(0.01) benign(0.407) TCGA-D3-A8GM-06 20 57484427 57484427 T C GNAS Missense_Mutation p.L846P 0.58 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GM-06 20 57766725 57766725 G A ZNF831 Silent p.G217G 0.59 TCGA-D3-A8GM-06 20 57768049 57768049 C T ZNF831 Missense_Mutation p.P659S 0.48 deleterious(0.01) possibly_damaging(0.863) TCGA-D3-A8GM-06 20 57768618 57768618 G A ZNF831 Silent p.T848T 0.59 TCGA-D3-A8GM-06 20 57768962 57768962 G A ZNF831 Missense_Mutation p.S963N 0.50 deleterious(0.03) benign(0.071) TCGA-D3-A8GM-06 20 60892478 60892478 C T LAMA5 Silent p.A2478A 0.09 TCGA-D3-A8GM-06 20 61039744 61039744 C T GATA5 3'UTR 0.29 TCGA-D3-A8GM-06 20 61150800 61150800 C T C20orf166 5'UTR 0.39 TCGA-D3-A8GM-06 20 61444525 61444525 G C OGFR Missense_Mutation p.E520Q 0.55 tolerated(0.2) benign(0.015) TCGA-D3-A8GM-06 20 61525086 61525086 G A DIDO1 Silent p.S1011S 0.17 TCGA-D3-A8GM-06 20 61917046 61917047 TC - ARFGAP1 Frame_Shift_Del p.Q284Vfs*8 0.29 TCGA-D3-A8GM-06 20 61978131 61978131 C T CHRNA4 Missense_Mutation p.V615M 0.12 tolerated(0.07) possibly_damaging(0.841) TCGA-D3-A8GM-06 20 61981815 61981815 G A CHRNA4 Silent p.F316F 0.19 TCGA-D3-A8GM-06 20 62195683 62195683 G A HELZ2 Missense_Mutation p.R1498W 0.27 deleterious(0) possibly_damaging(0.804) TCGA-D3-A8GM-06 20 62597668 62597668 G A ZNF512B Missense_Mutation p.P287L 0.48 deleterious_low_confidence(0.02) benign(0.11) TCGA-D3-A8GM-06 20 9374291 9374292 AA - PLCB4 Frame_Shift_Del p.N462Qfs*6 0.10 TCGA-D3-A8GM-06 20 9404515 9404515 C T PLCB4 Nonsense_Mutation p.R802* 0.15 TCGA-D3-A8GM-06 20 9417750 9417750 C T PLCB4 Silent p.L893L 0.16 TCGA-D3-A8GM-06 20 9449315 9449315 G A PLCB4 Missense_Mutation p.E1104K 0.56 deleterious(0.01) possibly_damaging(0.763) TCGA-D3-A8GM-06 20 9498741 9498741 G A LAMP5 Missense_Mutation p.G177E 0.16 tolerated(0.12) probably_damaging(0.938) TCGA-D3-A8GM-06 21 10862985 10862985 C T IGHV1OR21-1 Missense_Mutation p.S94F 0.13 deleterious(0) benign(0.413) TCGA-D3-A8GM-06 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.11 tolerated(0.06) benign(0.063) TCGA-D3-A8GM-06 21 10916377 10916377 C T TPTE Silent p.S423S 0.13 TCGA-D3-A8GM-06 21 10951345 10951345 G A TPTE Missense_Mutation p.P123S 0.16 tolerated(0.18) benign(0.046) TCGA-D3-A8GM-06 21 10998311 10998311 C T TPTE RNA 0.20 TCGA-D3-A8GM-06 21 11012973 11012973 G A TPTE RNA 0.08 TCGA-D3-A8GM-06 21 11038949 11038949 G A BAGE2 RNA 0.06 TCGA-D3-A8GM-06 21 11039189 11039189 G T BAGE2 RNA 0.06 TCGA-D3-A8GM-06 21 11047491 11047491 C T BAGE2 RNA 0.05 TCGA-D3-A8GM-06 21 11047514 11047514 C T BAGE2 RNA 0.06 TCGA-D3-A8GM-06 21 15561692 15561692 G A LIPI Missense_Mutation p.S53F 0.29 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 21 17202914 17202914 G A USP25 Missense_Mutation p.M586I 0.34 deleterious(0.04) benign(0.091) TCGA-D3-A8GM-06 21 17912228 17912228 G A MIRLET7C RNA 0.37 TCGA-D3-A8GM-06 21 18966542 18966542 G A BTG3 Missense_Mutation p.P254S 0.26 tolerated(0.22) possibly_damaging(0.652) TCGA-D3-A8GM-06 21 19666755 19666755 C T TMPRSS15 Missense_Mutation p.G773E 0.29 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 21 22910329 22910329 G A NCAM2 3'UTR 0.36 TCGA-D3-A8GM-06 21 27078293 27078293 G A JAM2 Missense_Mutation p.D234N 0.33 deleterious(0.04) benign(0.222) TCGA-D3-A8GM-06 21 27484426 27484426 G A APP Missense_Mutation p.P32L 0.31 deleterious(0) unknown(0) TCGA-D3-A8GM-06 21 30302710 30302710 G A LTN1 3'UTR 0.31 TCGA-D3-A8GM-06 21 30693827 30693827 C T BACH1 Missense_Mutation p.P76S 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 21 30693828 30693828 C T BACH1 Missense_Mutation p.P76L 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 21 30968745 30968745 G A GRIK1-AS2 Nonsense_Mutation p.W25* 0.28 TCGA-D3-A8GM-06 21 32185469 32185469 C T KRTAP8-1 Missense_Mutation p.G24R 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D3-A8GM-06 21 32554791 32554791 T C TIAM1 Missense_Mutation p.D945G 0.12 deleterious(0.04) benign(0.066) TCGA-D3-A8GM-06 21 35201967 35201967 C T ITSN1 Missense_Mutation p.P1090L 0.32 deleterious(0.05) benign(0.093) TCGA-D3-A8GM-06 21 35821442 35821442 G A KCNE1 3'UTR 0.30 TCGA-D3-A8GM-06 21 35895943 35895943 G A RCAN1 Silent p.F106F 0.27 TCGA-D3-A8GM-06 21 36081011 36081011 G A CLIC6 Missense_Mutation p.G542R 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-D3-A8GM-06 21 37418208 37418208 A G SETD4 Missense_Mutation p.L133S 0.12 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 21 37425888 37425888 G A SETD4 Missense_Mutation p.S67F 0.23 deleterious(0.01) possibly_damaging(0.811) TCGA-D3-A8GM-06 21 37586407 37586407 G A DOPEY2 Silent p.V311V 0.32 TCGA-D3-A8GM-06 21 37732538 37732538 A - MORC3 Frame_Shift_Del p.T465Pfs*17 0.17 TCGA-D3-A8GM-06 21 38095365 38095365 G A SIM2 Silent p.S159S 0.32 TCGA-D3-A8GM-06 21 39087357 39087357 G A KCNJ6 Nonsense_Mutation p.Q35* 0.23 TCGA-D3-A8GM-06 21 39672086 39672086 C T KCNJ15 Silent p.I301I 0.39 TCGA-D3-A8GM-06 21 39755364 39755364 G A ERG Silent p.P474P 0.30 TCGA-D3-A8GM-06 21 41173255 41173255 G A IGSF5 Missense_Mutation p.E399K 0.27 tolerated(1) benign(0) TCGA-D3-A8GM-06 21 41385212 41385212 C T DSCAM Missense_Mutation p.E1930K 0.33 tolerated_low_confidence(0.07) benign(0.194) TCGA-D3-A8GM-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 21 41725428 41725428 C T DSCAM Missense_Mutation p.G300R 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 21 41741054 41741054 C T DSCAM Silent p.Q209Q 0.25 TCGA-D3-A8GM-06 21 42839781 42839781 C T TMPRSS2 Silent p.K486K 0.30 TCGA-D3-A8GM-06 21 43176801 43176801 G A RIPK4 Nonsense_Mutation p.R120* 0.31 TCGA-D3-A8GM-06 21 43221806 43221806 G A PRDM15 Missense_Mutation p.P1373L 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 21 43912871 43912871 C T RSPH1 Missense_Mutation p.E91K 0.32 deleterious(0.03) possibly_damaging(0.724) TCGA-D3-A8GM-06 21 44845300 44845302 ATG - SIK1 In_Frame_Del p.I87del 0.35 TCGA-D3-A8GM-06 21 45518311 45518311 C T TRAPPC10 Missense_Mutation p.S1081F 0.35 tolerated(0.06) possibly_damaging(0.722) TCGA-D3-A8GM-06 21 45774547 45774547 C T TRPM2 Missense_Mutation p.S61L 0.25 tolerated(0.07) possibly_damaging(0.696) TCGA-D3-A8GM-06 21 45799026 45799026 C T TRPM2 Silent p.F387F 0.31 TCGA-D3-A8GM-06 21 45859049 45859049 G A TRPM2 Missense_Mutation p.E1423K 0.33 tolerated(0.32) benign(0.077) TCGA-D3-A8GM-06 21 45999943 45999943 G A KRTAP10-5 Silent p.S171S 0.40 TCGA-D3-A8GM-06 21 45999956 45999956 G A KRTAP10-5 Missense_Mutation p.P167L 0.31 deleterious(0.05) unknown(0) TCGA-D3-A8GM-06 21 46058059 46058059 G A KRTAP10-10 Missense_Mutation p.S242N 0.26 tolerated(0.15) benign(0.057) TCGA-D3-A8GM-06 21 46602600 46602600 C T ADARB1 Silent p.C393C 0.38 TCGA-D3-A8GM-06 21 46685518 46685518 G A POFUT2 Missense_Mutation p.S390F 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 21 47571529 47571529 C T FTCD Silent p.K193K 0.41 TCGA-D3-A8GM-06 21 47671623 47671623 A - MCM3AP Intron 0.42 TCGA-D3-A8GM-06 21 47703712 47703712 G A MCM3AP Silent p.S420S 0.39 TCGA-D3-A8GM-06 21 47783728 47783728 T C PCNT Missense_Mutation p.S830P 0.27 benign(0.01) TCGA-D3-A8GM-06 21 47851681 47851681 C T PCNT Missense_Mutation p.T2768I 0.15 possibly_damaging(0.86) TCGA-D3-A8GM-06 21 47983806 47983806 C T DIP2A Silent p.T1375T 0.30 TCGA-D3-A8GM-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.05 TCGA-D3-A8GM-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.12 deleterious(0.01) possibly_damaging(0.461) TCGA-D3-A8GM-06 22 17117981 17117981 G A TPTEP1 Splice_Site 0.19 TCGA-D3-A8GM-06 22 17443722 17443722 G A GAB4 Silent p.V542V 0.33 TCGA-D3-A8GM-06 22 17584385 17584385 C T IL17RA Missense_Mutation p.P255L 0.21 tolerated(0.09) possibly_damaging(0.614) TCGA-D3-A8GM-06 22 17584386 17584386 C T IL17RA Silent p.P255P 0.21 TCGA-D3-A8GM-06 22 17589831 17589831 C T IL17RA Silent p.F574F 0.50 TCGA-D3-A8GM-06 22 18845900 18845900 G A BCRP7 Intron 0.22 TCGA-D3-A8GM-06 22 19213870 19213870 G A CLTCL1 Missense_Mutation p.H607Y 0.26 tolerated(0.09) possibly_damaging(0.9) TCGA-D3-A8GM-06 22 19463094 19463094 G A UFD1L Missense_Mutation p.P12L 0.36 deleterious(0.04) benign(0.008) TCGA-D3-A8GM-06 22 20229604 20229604 C T RTN4R Missense_Mutation p.R351K 0.29 tolerated(1) benign(0.028) TCGA-D3-A8GM-06 22 20780191 20780191 G A SCARF2 Missense_Mutation p.A696V 0.26 tolerated(0.19) possibly_damaging(0.454) TCGA-D3-A8GM-06 22 21104229 21104229 C G PI4KA Missense_Mutation p.M1069I 0.42 tolerated(0.22) benign(0.109) TCGA-D3-A8GM-06 22 21119473 21119473 G A PI4KA Missense_Mutation p.S830F 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 22 21133784 21133784 G A SERPIND1 Missense_Mutation p.E62K 0.35 deleterious(0.04) benign(0.063) TCGA-D3-A8GM-06 22 21288124 21288124 T C CRKL Silent p.D123D 0.18 TCGA-D3-A8GM-06 22 21385707 21385707 G A SLC7A4 Missense_Mutation p.A132V 0.34 tolerated(0.05) benign(0.344) TCGA-D3-A8GM-06 22 21800492 21800492 C T HIC2 Silent p.S436S 0.27 TCGA-D3-A8GM-06 22 21947231 21947231 G T UBE2L3 Missense_Mutation p.G95W 0.33 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 22 21982797 21982797 G A YDJC Silent p.C294C 0.37 TCGA-D3-A8GM-06 22 23040756 23040756 G A IGLV2-23 Missense_Mutation p.M68I 0.29 tolerated_low_confidence(0.31) benign(0.001) TCGA-D3-A8GM-06 22 23656241 23656241 C T BCR Missense_Mutation p.L1182F 0.26 deleterious(0.02) possibly_damaging(0.849) TCGA-D3-A8GM-06 22 24313607 24313607 A T DDT 3'UTR 0.38 TCGA-D3-A8GM-06 22 24458445 24458445 C T CABIN1 Silent p.L551L 0.28 TCGA-D3-A8GM-06 22 24574190 24574190 G A CABIN1 3'UTR 0.27 TCGA-D3-A8GM-06 22 24621542 24621542 G A GGT5 Silent p.P436P 0.52 TCGA-D3-A8GM-06 22 24810521 24810521 G A SPECC1L Missense_Mutation p.R1095Q 0.37 tolerated(0.32) benign(0.033) TCGA-D3-A8GM-06 22 24898424 24898424 C T UPB1 Intron 0.20 TCGA-D3-A8GM-06 22 25294306 25294306 C T SGSM1 Missense_Mutation p.S852F 0.27 deleterious(0.02) benign(0.142) TCGA-D3-A8GM-06 22 26231385 26231385 C T MYO18B Silent p.F1061F 0.32 TCGA-D3-A8GM-06 22 26239737 26239737 C T MYO18B Nonsense_Mutation p.Q1082* 0.39 TCGA-D3-A8GM-06 22 26294398 26294398 G A MYO18B Missense_Mutation p.R1598Q 0.68 deleterious(0.01) possibly_damaging(0.46) TCGA-D3-A8GM-06 22 26299723 26299723 G A MYO18B Nonsense_Mutation p.W1691* 0.40 TCGA-D3-A8GM-06 22 26423659 26423659 A C MYO18B Intron 0.19 TCGA-D3-A8GM-06 22 26736442 26736442 G A SEZ6L Missense_Mutation p.G686S 0.30 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 22 26830382 26830382 G A ASPHD2 Silent p.G267G 0.37 TCGA-D3-A8GM-06 22 26906203 26906203 G A TFIP11 Silent p.G12G 0.42 TCGA-D3-A8GM-06 22 28193279 28193279 G A MN1 Missense_Mutation p.P1085S 0.35 benign(0.068) TCGA-D3-A8GM-06 22 28193394 28193394 C T MN1 Silent p.S1046S 0.26 TCGA-D3-A8GM-06 22 29627083 29627083 G A EMID1 Nonsense_Mutation p.W180* 0.23 TCGA-D3-A8GM-06 22 29737573 29737573 A T AP1B1 Silent p.A571A 0.25 TCGA-D3-A8GM-06 22 29745234 29745234 G A AP1B1 Silent p.L470L 0.42 TCGA-D3-A8GM-06 22 29754900 29754900 G A AP1B1 Missense_Mutation p.R114C 0.55 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GM-06 22 29754901 29754901 G A AP1B1 Silent p.I113I 0.55 TCGA-D3-A8GM-06 22 29885658 29885658 C T NEFH Missense_Mutation p.P677S 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-D3-A8GM-06 22 29885659 29885659 C T NEFH Missense_Mutation p.P677L 0.27 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-D3-A8GM-06 22 30367017 30367017 G A MTMR3 5'UTR 0.27 TCGA-D3-A8GM-06 22 30733137 30733137 G A SF3A1 Missense_Mutation p.P662S 0.52 tolerated(0.19) benign(0.002) TCGA-D3-A8GM-06 22 30823382 30823382 C T MTFP1 Silent p.P140P 0.26 TCGA-D3-A8GM-06 22 30975761 30975761 G A PES1 Missense_Mutation p.A444V 0.29 deleterious(0.01) benign(0.201) TCGA-D3-A8GM-06 22 31485810 31485810 C T SMTN Silent p.S199S 0.31 TCGA-D3-A8GM-06 22 31532761 31532761 G C PLA2G3 Missense_Mutation p.H408Q 0.38 tolerated(0.13) possibly_damaging(0.843) TCGA-D3-A8GM-06 22 31535954 31535954 C T PLA2G3 Silent p.R129R 0.40 TCGA-D3-A8GM-06 22 31672982 31672982 C T LIMK2 Silent p.L639L 0.25 TCGA-D3-A8GM-06 22 31854599 31854599 A G EIF4ENIF1 Silent p.D275D 0.30 TCGA-D3-A8GM-06 22 32546334 32546334 G A C22orf42 Missense_Mutation p.S209F 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-D3-A8GM-06 22 32626982 32626982 T A SLC5A4 Missense_Mutation p.T368S 0.20 tolerated(0.06) benign(0.217) TCGA-D3-A8GM-06 22 32754200 32754200 G A RFPL3 Missense_Mutation p.E48K 0.25 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A8GM-06 22 32914143 32914143 G A SYN3 Silent p.A499A 0.30 TCGA-D3-A8GM-06 22 33245440 33245440 G A TIMP3 Silent p.V41V 0.35 TCGA-D3-A8GM-06 22 35719490 35719490 C T TOM1 Missense_Mutation p.S123F 0.23 deleterious(0) probably_damaging(0.966) TCGA-D3-A8GM-06 22 35719549 35719549 G A TOM1 Missense_Mutation p.D143N 0.20 deleterious(0.03) probably_damaging(0.947) TCGA-D3-A8GM-06 22 36116701 36116701 C T APOL5 Missense_Mutation p.P48S 0.24 tolerated(0.74) benign(0.018) TCGA-D3-A8GM-06 22 36146491 36146491 T C RBFOX2 Intron 0.28 TCGA-D3-A8GM-06 22 36537581 36537581 C T APOL3 Silent p.G292G 0.37 TCGA-D3-A8GM-06 22 36697022 36697022 G A MYH9 Missense_Mutation p.R905C 0.22 probably_damaging(1) TCGA-D3-A8GM-06 22 36902278 36902278 C T FOXRED2 Silent p.R64R 0.15 TCGA-D3-A8GM-06 22 37471236 37471236 G A TMPRSS6 Silent p.S436S 0.32 TCGA-D3-A8GM-06 22 37770540 37770540 G A ELFN2 Silent p.I345I 0.34 TCGA-D3-A8GM-06 22 37891988 37891988 G A CARD10 Silent p.A694A 0.46 TCGA-D3-A8GM-06 22 38120297 38120297 C T TRIOBP Silent p.S578S 0.19 TCGA-D3-A8GM-06 22 39111919 39111919 T C GTPBP1 Silent p.T104T 0.12 TCGA-D3-A8GM-06 22 39410307 39410307 G A APOBEC3C 5'UTR 0.47 TCGA-D3-A8GM-06 22 39421083 39421083 C T APOBEC3D Silent p.F73F 0.39 TCGA-D3-A8GM-06 22 39530536 39530536 G A CBX7 Silent p.F156F 0.33 TCGA-D3-A8GM-06 22 39822743 39822743 G A TAB1 Silent p.K319K 0.30 TCGA-D3-A8GM-06 22 40055519 40055519 C T CACNA1I Silent p.F804F 0.35 TCGA-D3-A8GM-06 22 40055788 40055788 C T CACNA1I Silent p.L845L 0.35 TCGA-D3-A8GM-06 22 40257923 40257923 T A ENTHD1 Missense_Mutation p.T147S 0.32 deleterious(0) possibly_damaging(0.534) TCGA-D3-A8GM-06 22 40825619 40825619 C T MKL1 Missense_Mutation p.A98T 0.11 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 22 41169954 41169954 G A SLC25A17 Missense_Mutation p.H255Y 0.28 tolerated(0.95) benign(0.121) TCGA-D3-A8GM-06 22 41620046 41620046 C T L3MBTL2 Missense_Mutation p.P322L 0.47 deleterious(0.01) benign(0.358) TCGA-D3-A8GM-06 22 42078470 42078470 G A NHP2L1 5'UTR 0.47 TCGA-D3-A8GM-06 22 42290888 42290888 C T SREBF2 Silent p.S814S 0.39 TCGA-D3-A8GM-06 22 42341286 42341286 G A CENPM Silent p.L85L 0.50 TCGA-D3-A8GM-06 22 43442475 43442475 G A TTLL1 Silent p.I361I 0.39 TCGA-D3-A8GM-06 22 43567904 43567904 G A TTLL12 Missense_Mutation p.A499V 0.14 deleterious(0.01) benign(0.18) TCGA-D3-A8GM-06 22 43820995 43820995 T G MPPED1 Missense_Mutation p.W2G 0.19 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-D3-A8GM-06 22 45132716 45132716 C T PRR5 Silent p.S275S 0.37 TCGA-D3-A8GM-06 22 45210584 45210584 T C ARHGAP8 Missense_Mutation p.V233A 0.34 deleterious(0.02) probably_damaging(0.971) TCGA-D3-A8GM-06 22 45970484 45970484 C T FBLN1 Silent p.S597S 0.30 TCGA-D3-A8GM-06 22 46654709 46654709 C T PKDREJ Missense_Mutation p.G1504E 0.32 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 22 46656753 46656753 G A PKDREJ Missense_Mutation p.P823S 0.32 tolerated(0.58) benign(0.004) TCGA-D3-A8GM-06 22 46739203 46739203 A T TRMU Missense_Mutation p.D98V 0.46 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 22 46742403 46742403 C T TRMU Missense_Mutation p.P147L 0.29 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 22 46742404 46742404 C T TRMU Silent p.P147P 0.29 TCGA-D3-A8GM-06 22 46930113 46930113 G A CELSR1 Silent p.I985I 0.30 TCGA-D3-A8GM-06 22 47290702 47290702 T C TBC1D22A Missense_Mutation p.M287T 0.39 tolerated(0.36) benign(0.05) TCGA-D3-A8GM-06 22 50356665 50356665 C T PIM3 Missense_Mutation p.P291S 0.37 tolerated(0.16) possibly_damaging(0.453) TCGA-D3-A8GM-06 22 50470286 50470286 G A TTLL8 Silent p.F528F 0.24 TCGA-D3-A8GM-06 22 50615658 50615658 G A PANX2 Missense_Mutation p.A173T 0.15 deleterious(0.05) probably_damaging(0.997) TCGA-D3-A8GM-06 22 50667861 50667861 G A TUBGCP6 Missense_Mutation p.S421F 0.28 deleterious(0) possibly_damaging(0.827) TCGA-D3-A8GM-06 22 50693918 50693918 C T MAPK12 Missense_Mutation p.D272N 0.32 tolerated(0.36) probably_damaging(0.911) TCGA-D3-A8GM-06 22 50719321 50719321 T C PLXNB2 Missense_Mutation p.D1282G 0.36 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 22 50754503 50754503 G A DENND6B Missense_Mutation p.S218F 0.38 deleterious(0.01) benign(0.27) TCGA-D3-A8GM-06 22 50904233 50904233 A G SBF1 Missense_Mutation p.F350L 0.20 deleterious(0.03) possibly_damaging(0.547) TCGA-D3-A8GM-06 22 51009449 51009449 G A CPT1B Silent p.F633F 0.26 TCGA-D3-A8GM-06 22 51021106 51021106 C T CHKB Silent p.R35R 0.29 TCGA-D3-A8GM-06 22 51021107 51021107 C T CHKB Missense_Mutation p.R35Q 0.24 tolerated_low_confidence(0.26) benign(0.002) TCGA-D3-A8GM-06 2 100006706 100006706 G A EIF5B Missense_Mutation p.E810K 0.33 benign(0.241) TCGA-D3-A8GM-06 2 100209751 100209751 G C AFF3 Missense_Mutation p.A816G 0.19 tolerated(0.26) benign(0) TCGA-D3-A8GM-06 2 100623713 100623713 A G AFF3 Silent p.T153T 0.36 TCGA-D3-A8GM-06 2 10095128 10095128 C T GRHL1 Silent p.S35S 0.47 TCGA-D3-A8GM-06 2 101009987 101009987 A G CHST10 Missense_Mutation p.V264A 0.18 tolerated(0.49) benign(0.005) TCGA-D3-A8GM-06 2 101564729 101564729 C T NPAS2 Silent p.F132F 0.35 TCGA-D3-A8GM-06 2 101654045 101654045 G A TBC1D8 Silent p.A452A 0.20 TCGA-D3-A8GM-06 2 102441810 102441810 C T MAP4K4 Silent p.S112S 0.11 TCGA-D3-A8GM-06 2 102501695 102501695 T C MAP4K4 Silent p.S1044S 0.24 TCGA-D3-A8GM-06 2 102781343 102781343 G A IL1R1 Nonsense_Mutation p.W57* 0.20 TCGA-D3-A8GM-06 2 102805610 102805610 C T IL1RL2 Missense_Mutation p.P45S 0.17 tolerated(0.42) benign(0.11) TCGA-D3-A8GM-06 2 102842469 102842469 G A IL1RL2 Missense_Mutation p.R368Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 2 102849516 102849516 C T IL1RL2 Missense_Mutation p.P410L 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 2 102956602 102956602 A T IL1RL1 Missense_Mutation p.K106I 0.18 tolerated(0.05) possibly_damaging(0.896) TCGA-D3-A8GM-06 2 103061668 103061668 G A IL18RAP Missense_Mutation p.D314N 0.39 tolerated(0.56) benign(0.013) TCGA-D3-A8GM-06 2 103061800 103061800 G A IL18RAP Missense_Mutation p.V358M 0.35 deleterious(0) possibly_damaging(0.698) TCGA-D3-A8GM-06 2 103068559 103068559 G A IL18RAP Missense_Mutation p.R573K 0.38 tolerated(0.43) benign(0.004) TCGA-D3-A8GM-06 2 103095455 103095455 C T SLC9A4 Silent p.I138I 0.28 TCGA-D3-A8GM-06 2 103149214 103149214 G A SLC9A4 3'UTR 0.38 TCGA-D3-A8GM-06 2 10350706 10350706 C T C2orf48 Missense_Mutation p.P155S 0.20 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D3-A8GM-06 2 105924122 105924122 C T TGFBRAP1 Missense_Mutation p.V213I 0.36 tolerated(0.21) benign(0.376) TCGA-D3-A8GM-06 2 109357090 109357090 C T RANBP2 Nonsense_Mutation p.R310* 0.48 TCGA-D3-A8GM-06 2 109492639 109492639 A T CCDC138 Missense_Mutation p.N643I 0.38 deleterious(0) possibly_damaging(0.844) TCGA-D3-A8GM-06 2 110049015 110049015 G A SH3RF3 Missense_Mutation p.G488R 0.18 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 2 110301719 110301719 A G SEPT10 3'UTR 0.27 TCGA-D3-A8GM-06 2 111419300 111419300 G T BUB1 Missense_Mutation p.P359H 0.21 tolerated(0.06) benign(0.372) TCGA-D3-A8GM-06 2 112540073 112540073 G C ANAPC1 Missense_Mutation p.S1692C 0.35 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GM-06 2 112732872 112732872 G A MERTK Missense_Mutation p.E323K 0.17 tolerated(0.12) possibly_damaging(0.765) TCGA-D3-A8GM-06 2 112777022 112777022 G A MERTK Missense_Mutation p.M704I 0.38 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GM-06 2 113147660 113147660 C G RGPD8 Silent p.R954R 0.41 TCGA-D3-A8GM-06 2 113157290 113157290 A C RGPD8 Missense_Mutation p.D658E 0.24 tolerated(0.89) benign(0.003) TCGA-D3-A8GM-06 2 113763589 113763589 G A IL36A Missense_Mutation p.D17N 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 113890488 113890488 G A IL1RN 3'UTR 0.41 TCGA-D3-A8GM-06 2 11932094 11932094 T C LPIN1 Missense_Mutation p.W639R 0.21 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 2 119600480 119600480 G A EN1 3'UTR 0.25 TCGA-D3-A8GM-06 2 119739022 119739022 G A MARCO Silent p.G268G 0.21 TCGA-D3-A8GM-06 2 120776744 120776744 C T EPB41L5 Silent p.R28R 0.21 TCGA-D3-A8GM-06 2 121728054 121728054 G A GLI2 Missense_Mutation p.G311R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 121728055 121728055 G A GLI2 Missense_Mutation p.G311E 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 121742134 121742134 C T GLI2 Missense_Mutation p.P591S 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 2 121742243 121742243 G A GLI2 Missense_Mutation p.S627N 0.19 tolerated(0.28) benign(0.006) TCGA-D3-A8GM-06 2 121746989 121746989 C T GLI2 Missense_Mutation p.P1167S 0.31 tolerated(0.47) benign(0.004) TCGA-D3-A8GM-06 2 127825769 127825769 G A BIN1 Silent p.L194L 0.47 TCGA-D3-A8GM-06 2 128051269 128051269 G A ERCC3 Silent p.H18H 0.19 TCGA-D3-A8GM-06 2 128327444 128327444 G A MYO7B Nonsense_Mutation p.W184* 0.29 TCGA-D3-A8GM-06 2 128628856 128628856 A G AMMECR1L Missense_Mutation p.L162P 0.27 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 2 130737889 130737889 G A RAB6C Nonsense_Mutation p.W67* 0.30 TCGA-D3-A8GM-06 2 130737890 130737890 G A RAB6C Missense_Mutation p.D68N 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GM-06 2 130897120 130897120 C T CCDC74B 3'UTR 0.13 TCGA-D3-A8GM-06 2 131487661 131487661 C T GPR148 Missense_Mutation p.R313C 0.23 tolerated(0.07) possibly_damaging(0.886) TCGA-D3-A8GM-06 2 131520005 131520005 C T AMER3 Silent p.S120S 0.17 TCGA-D3-A8GM-06 2 131520421 131520421 C T AMER3 Missense_Mutation p.S259L 0.19 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GM-06 2 131520966 131520966 G A AMER3 Missense_Mutation p.D441N 0.15 deleterious(0.04) probably_damaging(0.979) TCGA-D3-A8GM-06 2 131976441 131976441 G A POTEE Missense_Mutation p.D156N 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.822) TCGA-D3-A8GM-06 2 132021820 132021820 C T POTEE Missense_Mutation p.A931V 0.08 deleterious_low_confidence(0) benign(0.336) TCGA-D3-A8GM-06 2 132110628 132110628 C T AC073869.2 RNA 0.17 TCGA-D3-A8GM-06 2 132277213 132277213 A G AC093838.4 RNA 0.48 TCGA-D3-A8GM-06 2 133541278 133541278 G A NCKAP5 Missense_Mutation p.P1036S 0.37 tolerated(0.22) benign(0.353) TCGA-D3-A8GM-06 2 133541639 133541639 G A NCKAP5 Silent p.H915H 0.16 TCGA-D3-A8GM-06 2 133542237 133542237 C T NCKAP5 Missense_Mutation p.G716E 0.18 tolerated(0.19) possibly_damaging(0.857) TCGA-D3-A8GM-06 2 133547722 133547722 G A NCKAP5 Silent p.I322I 0.18 TCGA-D3-A8GM-06 2 135659462 135659462 G A ACMSD 3'UTR 0.39 TCGA-D3-A8GM-06 2 135738943 135738943 A G MAP3K19 Missense_Mutation p.I1123T 0.17 deleterious(0.04) possibly_damaging(0.764) TCGA-D3-A8GM-06 2 135741250 135741250 C T MAP3K19 Missense_Mutation p.G1073D 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 135744039 135744039 G A MAP3K19 Silent p.F801F 0.30 TCGA-D3-A8GM-06 2 135745232 135745232 G A MAP3K19 Missense_Mutation p.P404S 0.05 tolerated(0.61) benign(0.017) TCGA-D3-A8GM-06 2 136545942 136545942 C T LCT Silent p.G1912G 0.16 TCGA-D3-A8GM-06 2 136567264 136567264 C T LCT Missense_Mutation p.E885K 0.23 deleterious(0.05) possibly_damaging(0.493) TCGA-D3-A8GM-06 2 137990556 137990556 C T THSD7B Missense_Mutation p.S668L 0.49 deleterious(0.04) possibly_damaging(0.776) TCGA-D3-A8GM-06 2 138033576 138033576 G A THSD7B Missense_Mutation p.G827E 0.29 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GM-06 2 138163282 138163282 C T THSD7B Missense_Mutation p.P867L 0.21 deleterious(0.04) possibly_damaging(0.851) TCGA-D3-A8GM-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.10 deleterious(0.02) unknown(0) TCGA-D3-A8GM-06 2 140992437 140992437 C T LRP1B Missense_Mutation p.G4526E 0.16 benign(0.007) TCGA-D3-A8GM-06 2 141267533 141267533 G A LRP1B Missense_Mutation p.P2788S 0.39 possibly_damaging(0.876) TCGA-D3-A8GM-06 2 141356218 141356218 G T LRP1B Nonsense_Mutation p.Y2392* 0.41 TCGA-D3-A8GM-06 2 141458040 141458040 C T LRP1B Missense_Mutation p.G2193E 0.21 probably_damaging(0.931) TCGA-D3-A8GM-06 2 142238076 142238076 G A LRP1B Missense_Mutation p.P78S 0.15 possibly_damaging(0.876) TCGA-D3-A8GM-06 2 144313991 144313991 G A ARHGAP15 Missense_Mutation p.G314R 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 145156313 145156313 T C ZEB2 Missense_Mutation p.E814G 0.17 tolerated(0.14) possibly_damaging(0.829) TCGA-D3-A8GM-06 2 149247347 149247347 G A MBD5 Missense_Mutation p.M1149I 0.29 tolerated_low_confidence(0.28) unknown(0) TCGA-D3-A8GM-06 2 149847622 149847622 C T KIF5C Silent p.S605S 0.32 TCGA-D3-A8GM-06 2 150327224 150327224 A G LYPD6 Missense_Mutation p.I126V 0.41 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 2 152321124 152321124 C T RIF1 Missense_Mutation p.S1697F 0.14 tolerated(0.72) possibly_damaging(0.463) TCGA-D3-A8GM-06 2 152321125 152321125 C T RIF1 Silent p.S1697S 0.15 TCGA-D3-A8GM-06 2 152375491 152375491 T C NEB Silent p.Q7561Q 0.44 TCGA-D3-A8GM-06 2 152487820 152487820 C G NEB Missense_Mutation p.G3152A 0.34 probably_damaging(0.999) TCGA-D3-A8GM-06 2 152506844 152506844 G A NEB Missense_Mutation p.P2426L 0.35 probably_damaging(0.968) TCGA-D3-A8GM-06 2 152553914 152553914 C T NEB Missense_Mutation p.E439K 0.16 probably_damaging(0.997) TCGA-D3-A8GM-06 2 152659738 152659739 - A ARL5A 3'UTR 0.30 TCGA-D3-A8GM-06 2 153378475 153378475 C T FMNL2 Missense_Mutation p.P46S 0.20 probably_damaging(0.999) TCGA-D3-A8GM-06 2 155566257 155566257 A G KCNJ3 Missense_Mutation p.D282G 0.36 tolerated(0.35) benign(0.107) TCGA-D3-A8GM-06 2 157425889 157425889 A G GPD2 Missense_Mutation p.T439A 0.16 deleterious(0.01) possibly_damaging(0.651) TCGA-D3-A8GM-06 2 158157217 158157217 C T GALNT5 Silent p.I715I 0.47 TCGA-D3-A8GM-06 2 158272278 158272278 T C CYTIP Missense_Mutation p.K331E 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 2 159170326 159170326 C T CCDC148 Missense_Mutation p.R282K 0.24 deleterious(0.03) possibly_damaging(0.567) TCGA-D3-A8GM-06 2 159195216 159195216 G A CCDC148 Intron 0.20 TCGA-D3-A8GM-06 2 159488387 159488387 C T PKP4 Missense_Mutation p.R426C 0.30 tolerated(0.07) benign(0.002) TCGA-D3-A8GM-06 2 159519805 159519805 C T PKP4 Missense_Mutation p.P809S 0.24 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 2 160139463 160139463 G A WDSUB1 Missense_Mutation p.R40C 0.17 tolerated(0.06) benign(0.205) TCGA-D3-A8GM-06 2 160843753 160843753 C T PLA2R1 Missense_Mutation p.E651K 0.14 tolerated(0.3) benign(0.011) TCGA-D3-A8GM-06 2 163134743 163134743 T C IFIH1 Silent p.E579E 0.33 TCGA-D3-A8GM-06 2 163250982 163250982 C T KCNH7 Missense_Mutation p.R876Q 0.34 tolerated(0.46) benign(0.018) TCGA-D3-A8GM-06 2 163302566 163302566 G A KCNH7 Missense_Mutation p.P506S 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 163374291 163374291 C T KCNH7 Missense_Mutation p.G281R 0.18 deleterious(0) possibly_damaging(0.899) TCGA-D3-A8GM-06 2 163374344 163374344 G A KCNH7 Missense_Mutation p.S263L 0.24 tolerated(0.09) benign(0.188) TCGA-D3-A8GM-06 2 164466984 164466984 G A FIGN Missense_Mutation p.S453F 0.29 tolerated(0.22) possibly_damaging(0.896) TCGA-D3-A8GM-06 2 165551222 165551222 G A COBLL1 Missense_Mutation p.P932S 0.40 tolerated(0.72) possibly_damaging(0.839) TCGA-D3-A8GM-06 2 165986558 165986558 G A SCN3A Silent p.R938R 0.05 TCGA-D3-A8GM-06 2 166615345 166615345 G A GALNT3 Missense_Mutation p.S368F 0.28 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 2 166894560 166894560 C T SCN1A Missense_Mutation p.G891E 0.37 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 2 166896092 166896092 G A SCN1A Silent p.I810I 0.32 TCGA-D3-A8GM-06 2 167108336 167108336 T A SCN9A Missense_Mutation p.E1126D 0.16 tolerated(0.12) benign(0.154) TCGA-D3-A8GM-06 2 167129157 167129157 C T SCN9A Missense_Mutation p.E1024K 0.40 tolerated(0.33) benign(0.006) TCGA-D3-A8GM-06 2 167159660 167159660 C T SCN9A Missense_Mutation p.E281K 0.24 tolerated(0.56) benign(0.119) TCGA-D3-A8GM-06 2 167304170 167304170 C T SCN7A Missense_Mutation p.D447N 0.20 tolerated(0.71) benign(0) TCGA-D3-A8GM-06 2 167319026 167319026 C T SCN7A Missense_Mutation p.G319E 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 2 167760074 167760074 C T XIRP2 Missense_Mutation p.P28S 0.31 possibly_damaging(0.833) TCGA-D3-A8GM-06 2 168101724 168101724 G T XIRP2 Missense_Mutation p.K1274N 0.11 probably_damaging(0.945) TCGA-D3-A8GM-06 2 168105415 168105415 C T XIRP2 Missense_Mutation p.P2505S 0.33 benign(0.109) TCGA-D3-A8GM-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.38 TCGA-D3-A8GM-06 2 168921853 168921853 C A STK39 Missense_Mutation p.Q427H 0.40 deleterious(0.05) benign(0.396) TCGA-D3-A8GM-06 2 169551543 169551543 C T CERS6 Silent p.F197F 0.20 TCGA-D3-A8GM-06 2 169745769 169745769 G A SPC25 Nonsense_Mutation p.R56* 0.14 TCGA-D3-A8GM-06 2 169764516 169764516 C T G6PC2 Missense_Mutation p.P332L 0.25 tolerated(0.2) probably_damaging(1) TCGA-D3-A8GM-06 2 169826596 169826596 C T ABCB11 Missense_Mutation p.D590N 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 170147367 170147368 - G LRP2 Frame_Shift_Ins p.G304Rfs*5 0.26 TCGA-D3-A8GM-06 2 171376023 171376023 A G MYO3B Missense_Mutation p.N1183S 0.18 tolerated_low_confidence(0.68) benign(0) TCGA-D3-A8GM-06 2 176973668 176973668 C T HOXD11 Missense_Mutation p.P272L 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 17698579 17698579 A G RAD51AP2 Silent p.A368A 0.17 TCGA-D3-A8GM-06 2 178969097 178969097 C A CYCTP RNA 0.20 TCGA-D3-A8GM-06 2 17898171 17898171 T C SMC6 Missense_Mutation p.T395A 0.15 tolerated(0.81) benign(0.001) TCGA-D3-A8GM-06 2 179197430 179197430 G A OSBPL6 Silent p.K145K 0.35 TCGA-D3-A8GM-06 2 179197458 179197458 G A OSBPL6 Missense_Mutation p.E155K 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 2 179396335 179396335 C T TTN Missense_Mutation p.D35003N 0.17 TCGA-D3-A8GM-06 2 179396688 179396688 C T TTN Missense_Mutation p.R34885Q 0.19 TCGA-D3-A8GM-06 2 179408582 179408582 T C TTN Missense_Mutation p.T32097A 0.14 TCGA-D3-A8GM-06 2 179414863 179414863 C T TTN Missense_Mutation p.E30568K 0.28 TCGA-D3-A8GM-06 2 179463717 179463717 T C TTN Missense_Mutation p.E18907G 0.27 TCGA-D3-A8GM-06 2 179474666 179474666 C T TTN Missense_Mutation p.E17162K 0.40 TCGA-D3-A8GM-06 2 179494096 179494096 C T TTN Missense_Mutation p.E14786K 0.46 TCGA-D3-A8GM-06 2 179494115 179494115 T A TTN Missense_Mutation p.E14779D 0.14 TCGA-D3-A8GM-06 2 179499498 179499498 G A TTN Missense_Mutation p.L14035F 0.45 TCGA-D3-A8GM-06 2 179522825 179522826 - T TTN Frame_Shift_Ins p.P12591Tfs*10 0.12 TCGA-D3-A8GM-06 2 179554063 179554063 C T TTN Silent p.R10655R 0.23 TCGA-D3-A8GM-06 2 179577262 179577262 C T TTN Silent p.L9129L 0.20 TCGA-D3-A8GM-06 2 179583447 179583447 G A TTN Silent p.S8160S 0.30 TCGA-D3-A8GM-06 2 179583448 179583448 G A TTN Missense_Mutation p.S8160F 0.29 TCGA-D3-A8GM-06 2 179593492 179593492 G A TTN Silent p.I6387I 0.45 TCGA-D3-A8GM-06 2 179594439 179594439 G A TTN Nonsense_Mutation p.R6181* 0.39 TCGA-D3-A8GM-06 2 179604099 179604099 C T TTN Missense_Mutation p.D4621N 0.34 TCGA-D3-A8GM-06 2 179604849 179604849 C T TTN Missense_Mutation p.E4371K 0.15 TCGA-D3-A8GM-06 2 179610759 179610759 C T TTN Intron 0.21 TCGA-D3-A8GM-06 2 179612334 179612334 C T TTN Intron 0.16 TCGA-D3-A8GM-06 2 179638218 179638218 A G TTN Missense_Mutation p.V2522A 0.41 TCGA-D3-A8GM-06 2 179639703 179639703 G T TTN Missense_Mutation p.S2245R 0.17 TCGA-D3-A8GM-06 2 179644778 179644778 C T TTN Silent p.R1226R 0.38 TCGA-D3-A8GM-06 2 179732785 179732785 C T CCDC141 Missense_Mutation p.G848R 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 180309622 180309622 C T ZNF385B Missense_Mutation p.R393Q 0.43 tolerated(0.07) probably_damaging(0.997) TCGA-D3-A8GM-06 2 180311467 180311467 G A ZNF385B Missense_Mutation p.S234F 0.21 tolerated(0.28) benign(0.176) TCGA-D3-A8GM-06 2 180810296 180810299 TTCT - CWC22 Frame_Shift_Del p.R762Gfs*19 0.35 TCGA-D3-A8GM-06 2 18112639 18112639 C T KCNS3 Nonsense_Mutation p.Q122* 0.36 TCGA-D3-A8GM-06 2 182409463 182409463 T C CERKL Missense_Mutation p.I469M 0.15 deleterious(0.01) probably_damaging(0.928) TCGA-D3-A8GM-06 2 183053753 183053753 G A PDE1A Missense_Mutation p.S403F 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 183066509 183066509 G A PDE1A Missense_Mutation p.R320W 0.13 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 2 185798364 185798364 G A ZNF804A Missense_Mutation p.R97Q 0.31 deleterious(0) probably_damaging(0.915) TCGA-D3-A8GM-06 2 185801657 185801657 G A ZNF804A Missense_Mutation p.E512K 0.16 tolerated(0.07) benign(0.076) TCGA-D3-A8GM-06 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.13 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GM-06 2 186670793 186670793 C T FSIP2 Missense_Mutation p.S5676L 0.38 benign(0.001) TCGA-D3-A8GM-06 2 186672081 186672081 G A FSIP2 Silent p.V6105V 0.44 TCGA-D3-A8GM-06 2 186673347 186673347 A T FSIP2 Missense_Mutation p.E6527D 0.36 benign(0.023) TCGA-D3-A8GM-06 2 186692919 186692919 G A FSIP2 Missense_Mutation p.S6926N 0.39 benign(0.01) TCGA-D3-A8GM-06 2 186692920 186692920 T A FSIP2 Missense_Mutation p.S6926R 0.39 benign(0.403) TCGA-D3-A8GM-06 2 18745173 18745173 C T NT5C1B Silent p.L574L 0.36 TCGA-D3-A8GM-06 2 187615861 187615861 G A FAM171B Missense_Mutation p.G242D 0.16 deleterious(0) probably_damaging(0.965) TCGA-D3-A8GM-06 2 187693471 187693471 G A ZSWIM2 Missense_Mutation p.S381L 0.24 deleterious(0) possibly_damaging(0.773) TCGA-D3-A8GM-06 2 189162302 189162302 C A GULP1 Intron 0.35 TCGA-D3-A8GM-06 2 189599410 189599410 C T DIRC1 Missense_Mutation p.E80K 0.17 tolerated_low_confidence(0.08) benign(0.008) TCGA-D3-A8GM-06 2 189599602 189599602 G A DIRC1 Missense_Mutation p.P16S 0.24 tolerated_low_confidence(0.4) possibly_damaging(0.803) TCGA-D3-A8GM-06 2 189859295 189859295 G A COL3A1 Missense_Mutation p.G441E 0.45 unknown(0) TCGA-D3-A8GM-06 2 189870085 189870085 G A COL3A1 Missense_Mutation p.G981R 0.33 probably_damaging(1) TCGA-D3-A8GM-06 2 189875015 189875015 G A COL3A1 Missense_Mutation p.R1312Q 0.36 unknown(0) TCGA-D3-A8GM-06 2 190927278 190927278 C T MSTN Silent p.L15L 0.20 TCGA-D3-A8GM-06 2 191941038 191941038 C T STAT4 Missense_Mutation p.G96E 0.16 tolerated(1) benign(0.007) TCGA-D3-A8GM-06 2 192701141 192701141 G A SDPR Silent p.I262I 0.34 TCGA-D3-A8GM-06 2 192863813 192863813 C T TMEFF2 Missense_Mutation p.E220K 0.12 deleterious(0.04) possibly_damaging(0.489) TCGA-D3-A8GM-06 2 192863836 192863836 G A TMEFF2 Missense_Mutation p.S212L 0.16 deleterious(0.03) possibly_damaging(0.68) TCGA-D3-A8GM-06 2 196636518 196636518 C T DNAH7 Missense_Mutation p.E3767K 0.35 deleterious(0.02) benign(0.097) TCGA-D3-A8GM-06 2 196659194 196659194 G A DNAH7 Silent p.F3528F 0.40 TCGA-D3-A8GM-06 2 196737151 196737151 G A DNAH7 Silent p.I2152I 0.18 TCGA-D3-A8GM-06 2 196759799 196759799 C T DNAH7 Missense_Mutation p.M1599I 0.17 tolerated(0.2) benign(0.05) TCGA-D3-A8GM-06 2 196762419 196762419 A G DNAH7 Missense_Mutation p.F1540S 0.33 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 2 197010728 197010728 C A STK17B Missense_Mutation p.M129I 0.35 tolerated(0.39) benign(0.031) TCGA-D3-A8GM-06 2 197183398 197183398 C T HECW2 Missense_Mutation p.R739Q 0.17 deleterious_low_confidence(0.01) benign(0.309) TCGA-D3-A8GM-06 2 197298098 197298098 G A HECW2 Missense_Mutation p.P17L 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GM-06 2 197629312 197629312 A C GTF3C3 Missense_Mutation p.L879R 0.22 deleterious(0) benign(0.352) TCGA-D3-A8GM-06 2 197637667 197637667 T - GTF3C3 Frame_Shift_Del p.N681Ifs*11 0.09 TCGA-D3-A8GM-06 2 197637774 197637774 A G GTF3C3 Silent p.A645A 0.38 TCGA-D3-A8GM-06 2 198268336 198268336 A T SF3B1 Missense_Mutation p.D564E 0.61 deleterious(0.03) possibly_damaging(0.742) TCGA-D3-A8GM-06 2 1983319 1983319 C T MYT1L Silent p.V21V 0.18 TCGA-D3-A8GM-06 2 200213721 200213721 G A SATB2 Silent p.I292I 0.21 TCGA-D3-A8GM-06 2 201485372 201485372 G A AOX1 Splice_Site p.X569_splice 0.43 TCGA-D3-A8GM-06 2 202626385 202626385 A G ALS2 Missense_Mutation p.V111A 0.20 tolerated(0.51) benign(0.001) TCGA-D3-A8GM-06 2 203621960 203621960 C T FAM117B Missense_Mutation p.R377C 0.12 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GM-06 2 20402524 20402524 G A SDC1 3'UTR 0.12 TCGA-D3-A8GM-06 2 204735406 204735406 C T CTLA4 Silent p.V69V 0.45 TCGA-D3-A8GM-06 2 206581059 206581059 G A NRP2 Missense_Mutation p.G132R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 206581060 206581060 G A NRP2 Missense_Mutation p.G132E 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 207041590 207041590 G A GPR1 Silent p.L128L 0.18 TCGA-D3-A8GM-06 2 207170123 207170123 C T ZDBF2 Missense_Mutation p.R291C 0.35 tolerated(0.25) possibly_damaging(0.689) TCGA-D3-A8GM-06 2 207457452 207457452 T C ADAM23 Silent p.I690I 0.24 TCGA-D3-A8GM-06 2 207460810 207460810 C T ADAM23 Silent p.F761F 0.15 TCGA-D3-A8GM-06 2 207833952 207833952 C T CPO Missense_Mutation p.S306L 0.17 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GM-06 2 208986337 208986337 G A CRYGD 3'UTR 0.24 TCGA-D3-A8GM-06 2 209113146 209113147 - A IDH1 Frame_Shift_Ins p.V121Cfs*23 0.25 TCGA-D3-A8GM-06 2 211512694 211512694 C T CPS1 Silent p.I1089I 0.17 TCGA-D3-A8GM-06 2 211523399 211523399 G A CPS1 Missense_Mutation p.G1254E 0.13 tolerated(0.13) possibly_damaging(0.901) TCGA-D3-A8GM-06 2 211541794 211541794 C T CPS1 Silent p.V1452V 0.17 TCGA-D3-A8GM-06 2 212566884 212566884 A G ERBB4 Missense_Mutation p.S433P 0.06 tolerated(0.2) benign(0.144) TCGA-D3-A8GM-06 2 21260043 21260043 C T APOB Missense_Mutation p.D208N 0.37 benign(0.001) TCGA-D3-A8GM-06 2 212812260 212812260 G A ERBB4 Missense_Mutation p.R106C 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 213878558 213878558 C T IKZF2 Silent p.G271G 0.19 TCGA-D3-A8GM-06 2 215815798 215815798 G A ABCA12 Silent p.F2219F 0.35 TCGA-D3-A8GM-06 2 215843172 215843172 T A ABCA12 Nonsense_Mutation p.K1666* 0.14 TCGA-D3-A8GM-06 2 215890426 215890426 G A ABCA12 Missense_Mutation p.P420S 0.18 tolerated(0.94) benign(0.001) TCGA-D3-A8GM-06 2 216289900 216289900 A T FN1 Missense_Mutation p.V318E 0.45 tolerated(0.87) benign(0.004) TCGA-D3-A8GM-06 2 217526654 217526654 C T IGFBP2 Missense_Mutation p.P249L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 2 219029157 219029157 G A CXCR1 Silent p.L260L 0.18 TCGA-D3-A8GM-06 2 219029884 219029884 G A CXCR1 Silent p.F17F 0.20 TCGA-D3-A8GM-06 2 219300072 219300072 G A VIL1 Missense_Mutation p.E581K 0.10 tolerated(0.36) benign(0.027) TCGA-D3-A8GM-06 2 219319617 219319617 T C USP37 3'UTR 0.45 TCGA-D3-A8GM-06 2 219445365 219445365 G T RQCD1 Nonsense_Mutation p.E36* 0.25 TCGA-D3-A8GM-06 2 219562645 219562645 C T STK36 Missense_Mutation p.A993V 0.42 deleterious(0) possibly_damaging(0.764) TCGA-D3-A8GM-06 2 219602893 219602893 C T TTLL4 Missense_Mutation p.S165F 0.34 tolerated(0.12) benign(0.006) TCGA-D3-A8GM-06 2 219888898 219888898 G A CCDC108 Silent p.L812L 0.14 TCGA-D3-A8GM-06 2 220085482 220085482 G - ATG9A Frame_Shift_Del p.P834Lfs*10 0.18 TCGA-D3-A8GM-06 2 220166910 220166910 C T PTPRN Missense_Mutation p.E315K 0.15 tolerated(0.24) benign(0.003) TCGA-D3-A8GM-06 2 220431684 220431684 G A OBSL1 Silent p.L668L 0.47 TCGA-D3-A8GM-06 2 220471535 220471535 C T STK11IP Silent p.L374L 0.42 TCGA-D3-A8GM-06 2 220479899 220479899 G A STK11IP Missense_Mutation p.E996K 0.33 tolerated(0.09) benign(0.404) TCGA-D3-A8GM-06 2 222428782 222428782 C T EPHA4 Missense_Mutation p.M164I 0.22 deleterious(0.01) possibly_damaging(0.708) TCGA-D3-A8GM-06 2 226447312 226447312 G A NYAP2 Silent p.L393L 0.17 TCGA-D3-A8GM-06 2 227729455 227729455 C T RHBDD1 Missense_Mutation p.L16F 0.17 tolerated(0.24) benign(0.007) TCGA-D3-A8GM-06 2 227896691 227896691 G A COL4A4 Nonsense_Mutation p.Q1263* 0.23 TCGA-D3-A8GM-06 2 227979393 227979393 C T COL4A4 Missense_Mutation p.G170E 0.28 probably_damaging(0.999) TCGA-D3-A8GM-06 2 228153874 228153874 G A COL4A3 Missense_Mutation p.G964R 0.30 unknown(0) TCGA-D3-A8GM-06 2 228159694 228159694 C T COL4A3 Missense_Mutation p.P1145S 0.19 unknown(0) TCGA-D3-A8GM-06 2 228881928 228881928 C T SPHKAP Silent p.R1214R 0.22 TCGA-D3-A8GM-06 2 228882995 228882995 C A SPHKAP Nonsense_Mutation p.G859* 0.22 TCGA-D3-A8GM-06 2 230231657 230231657 C T DNER Silent p.E678E 0.44 TCGA-D3-A8GM-06 2 230231678 230231678 A G DNER Silent p.G671G 0.19 TCGA-D3-A8GM-06 2 230661466 230661466 G A TRIP12 Silent p.I1144I 0.24 TCGA-D3-A8GM-06 2 230902211 230902211 G A SLC16A14 Missense_Mutation p.S473F 0.15 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 2 231090543 231090543 G A SP140 5'UTR 0.48 TCGA-D3-A8GM-06 2 231103072 231103072 G A SP140 Missense_Mutation p.E128K 0.37 tolerated(0.09) benign(0.418) TCGA-D3-A8GM-06 2 231177471 231177471 C T SP140 3'UTR 0.43 TCGA-D3-A8GM-06 2 231248225 231248225 G A SP140L Missense_Mutation p.R213K 0.36 tolerated(0.24) benign(0.001) TCGA-D3-A8GM-06 2 231774733 231774733 C T GPR55 Silent p.T315T 0.46 TCGA-D3-A8GM-06 2 231936915 231936915 T C PSMD1 Silent p.L223L 0.14 TCGA-D3-A8GM-06 2 232576099 232576099 T C PTMA Silent p.N29N 0.24 TCGA-D3-A8GM-06 2 232578194 232578194 G A PTMA 3'UTR 0.26 TCGA-D3-A8GM-06 2 232879570 232879570 C T DIS3L2 5'UTR 0.21 TCGA-D3-A8GM-06 2 233244695 233272776 2:233244695-233272776 - ALPP large deletion 0.23 TCGA-D3-A8GM-06 2 233750080 233750080 C T NGEF Splice_Site p.X450_splice 0.42 TCGA-D3-A8GM-06 2 233759457 233759457 C T NGEF Intron 0.25 TCGA-D3-A8GM-06 2 234107007 234107007 G A INPP5D Missense_Mutation p.R975K 0.22 tolerated_low_confidence(0.25) possibly_damaging(0.581) TCGA-D3-A8GM-06 2 234375848 234375848 G A DGKD Silent p.P1141P 0.33 TCGA-D3-A8GM-06 2 234545613 234545613 C T UGT1A10 Missense_Mutation p.P149S 0.20 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 2 234545654 234545654 C T UGT1A10 Silent p.S162S 0.49 TCGA-D3-A8GM-06 2 234545895 234545895 G A UGT1A10 Missense_Mutation p.D243N 0.38 deleterious(0.01) possibly_damaging(0.777) TCGA-D3-A8GM-06 2 234602165 234602165 G A UGT1A6 Missense_Mutation p.R172K 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GM-06 2 234628239 234628239 G T UGT1A4 Missense_Mutation p.R258L 0.18 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 2 234750330 234750330 G A HJURP Nonsense_Mutation p.Q366* 0.38 TCGA-D3-A8GM-06 2 234869435 234869435 G A TRPM8 Missense_Mutation p.E460K 0.19 tolerated(0.42) benign(0.075) TCGA-D3-A8GM-06 2 234873274 234873274 C T TRPM8 Silent p.T584T 0.11 TCGA-D3-A8GM-06 2 234891807 234891807 C T TRPM8 Silent p.F900F 0.20 TCGA-D3-A8GM-06 2 238280916 238280916 G A COL6A3 Silent p.F1248F 0.42 TCGA-D3-A8GM-06 2 238303279 238303279 G C COL6A3 Silent p.S220S 0.51 TCGA-D3-A8GM-06 2 238672529 238672529 C T LRRFIP1 Missense_Mutation p.R725C 0.18 deleterious(0.03) benign(0.258) TCGA-D3-A8GM-06 2 239079046 239079047 - A ILKAP 3'UTR 0.37 TCGA-D3-A8GM-06 2 241569879 241569879 C T GPR35 Silent p.F201F 0.29 TCGA-D3-A8GM-06 2 241569895 241569895 C T GPR35 Missense_Mutation p.P207S 0.30 tolerated(1) benign(0) TCGA-D3-A8GM-06 2 241684927 241684927 G A KIF1A Missense_Mutation p.H1128Y 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A8GM-06 2 242066588 242066588 G A PASK Missense_Mutation p.P581L 0.38 tolerated(0.19) benign(0.173) TCGA-D3-A8GM-06 2 242092920 242092920 G A PPP1R7 Missense_Mutation p.G28S 0.22 deleterious(0.03) unknown(0) TCGA-D3-A8GM-06 2 242541360 242541360 G A THAP4 Missense_Mutation p.S522F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 2 26534565 26534565 G A GPR113 Silent p.S677S 0.50 TCGA-D3-A8GM-06 2 27015682 27015682 C T CENPA Missense_Mutation p.A90V 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 2 27603375 27603375 T G ZNF513 Missense_Mutation p.S7R 0.40 deleterious(0.02) benign(0.307) TCGA-D3-A8GM-06 2 27804224 27804224 G A C2orf16 Silent p.R1595R 0.17 TCGA-D3-A8GM-06 2 27823589 27823589 C T ZNF512 Silent p.I163I 0.25 TCGA-D3-A8GM-06 2 29087970 29087970 G A TRMT61B Missense_Mutation p.L239F 0.32 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 2 29221110 29221110 C T FAM179A Missense_Mutation p.H44Y 0.40 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 2 29225431 29225431 G A FAM179A Missense_Mutation p.G153R 0.17 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GM-06 2 29268267 29268267 C T FAM179A Missense_Mutation p.R905C 0.42 deleterious(0.02) benign(0.081) TCGA-D3-A8GM-06 2 29390358 29390358 G A CLIP4 Missense_Mutation p.D559N 0.21 tolerated(0.05) possibly_damaging(0.881) TCGA-D3-A8GM-06 2 29451784 29451784 C - ALK Frame_Shift_Del p.C928Afs*11 0.29 TCGA-D3-A8GM-06 2 31573044 31573044 G A XDH Missense_Mutation p.P893S 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-D3-A8GM-06 2 31573045 31573045 G A XDH Silent p.I892I 0.12 TCGA-D3-A8GM-06 2 31605947 31605947 G A XDH Missense_Mutation p.P320S 0.36 deleterious(0.01) benign(0.247) TCGA-D3-A8GM-06 2 32617136 32617136 G A BIRC6 Missense_Mutation p.R290Q 0.23 benign(0.235) TCGA-D3-A8GM-06 2 33590563 33590563 G A LTBP1 Silent p.K1568K 0.19 TCGA-D3-A8GM-06 2 33952679 33952679 C T AC009499.1 Intron 0.46 TCGA-D3-A8GM-06 2 37306473 37306473 G T HEATR5B Missense_Mutation p.T43N 0.23 tolerated(0.5) benign(0.008) TCGA-D3-A8GM-06 2 38179021 38179021 T A RMDN2 Missense_Mutation p.D221E 0.43 deleterious_low_confidence(0.03) benign(0.3) TCGA-D3-A8GM-06 2 39053094 39053094 G A DHX57 Missense_Mutation p.S970F 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GM-06 2 46313410 46313410 T C PRKCE Missense_Mutation p.S501P 0.44 deleterious(0.01) possibly_damaging(0.898) TCGA-D3-A8GM-06 2 47643504 47643504 G A MSH2 Missense_Mutation p.G338R 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 2 47672794 47672794 C T MSH2 Nonsense_Mutation p.Q462* 0.25 TCGA-D3-A8GM-06 2 48027891 48027891 G A MSH6 Silent p.K923K 0.25 TCGA-D3-A8GM-06 2 48818950 48818950 C T STON1-GTF2A1L Nonsense_Mutation p.Q697* 0.48 TCGA-D3-A8GM-06 2 49381523 49381523 G A FSHR Silent p.L12L 0.11 TCGA-D3-A8GM-06 2 50755790 50755790 C T NRXN1 Splice_Site p.X823_splice 0.29 TCGA-D3-A8GM-06 2 50779735 50779735 G A NRXN1 Silent p.D623D 0.13 TCGA-D3-A8GM-06 2 50850540 50850540 C T NRXN1 Missense_Mutation p.G382E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 55573425 55573425 T G CCDC88A Silent p.R309R 0.35 TCGA-D3-A8GM-06 2 55913551 55913551 G A PNPT1 Missense_Mutation p.A84V 0.25 tolerated(0.45) benign(0.386) TCGA-D3-A8GM-06 2 56599585 56599585 G A CCDC85A Missense_Mutation p.G475E 0.33 tolerated_low_confidence(0.15) probably_damaging(0.972) TCGA-D3-A8GM-06 2 5833195 5833195 C T SOX11 Silent p.P114P 0.19 TCGA-D3-A8GM-06 2 60687900 60687900 G A BCL11A Missense_Mutation p.T716M 0.25 deleterious(0.01) possibly_damaging(0.791) TCGA-D3-A8GM-06 2 61361287 61361287 C T KIAA1841 Missense_Mutation p.P682S 0.14 tolerated_low_confidence(0.45) unknown(0) TCGA-D3-A8GM-06 2 61361288 61361288 C T KIAA1841 Missense_Mutation p.P682L 0.14 tolerated_low_confidence(0.1) unknown(0) TCGA-D3-A8GM-06 2 62067514 62067514 C T FAM161A Missense_Mutation p.E209K 0.33 tolerated(0.15) benign(0.101) TCGA-D3-A8GM-06 2 64321801 64321801 A T PELI1 3'UTR 0.20 TCGA-D3-A8GM-06 2 64323615 64323615 G A PELI1 Missense_Mutation p.R145W 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 68607900 68607900 C T PLEK Nonsense_Mutation p.Q82* 0.27 TCGA-D3-A8GM-06 2 68622846 68622846 C T PLEK Silent p.I317I 0.45 TCGA-D3-A8GM-06 2 69092698 69092698 C T BMP10 3'UTR 0.27 TCGA-D3-A8GM-06 2 69708053 69708053 C T AAK1 Silent p.L836L 0.27 TCGA-D3-A8GM-06 2 70188484 70188484 G A ASPRV1 Missense_Mutation p.P113S 0.24 tolerated(0.09) benign(0.423) TCGA-D3-A8GM-06 2 70188518 70188518 G A ASPRV1 Silent p.F101F 0.34 TCGA-D3-A8GM-06 2 70890760 70890760 C T ADD2 Missense_Mutation p.E660K 0.23 deleterious(0.03) benign(0.129) TCGA-D3-A8GM-06 2 71186167 71186167 C T ATP6V1B1 Silent p.S129S 0.26 TCGA-D3-A8GM-06 2 71304720 71304720 C T NAGK Silent p.I312I 0.20 TCGA-D3-A8GM-06 2 71708014 71708014 G A DYSF Silent p.G31G 0.20 TCGA-D3-A8GM-06 2 72371321 72371321 G A CYP26B1 Missense_Mutation p.R76W 0.07 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GM-06 2 73678363 73678363 C T ALMS1 Missense_Mutation p.S1569F 0.23 benign(0.354) TCGA-D3-A8GM-06 2 74043295 74043295 G A C2orf78 Missense_Mutation p.G649R 0.25 deleterious(0.02) possibly_damaging(0.449) TCGA-D3-A8GM-06 2 74687528 74687528 C G WBP1 Missense_Mutation p.S177C 0.41 deleterious(0) possibly_damaging(0.728) TCGA-D3-A8GM-06 2 74699807 74699807 G A MRPL53 5'UTR 0.19 TCGA-D3-A8GM-06 2 74750253 74750253 G A DQX1 Silent p.F379F 0.39 TCGA-D3-A8GM-06 2 74750653 74750653 C A DQX1 Silent p.L276L 0.47 TCGA-D3-A8GM-06 2 74902142 74902142 C T SEMA4F Missense_Mutation p.P377S 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 2 75196681 75196681 G A POLE4 3'UTR 0.22 TCGA-D3-A8GM-06 2 75933778 75933778 C T GCFC2 Splice_Site p.X89_splice 0.21 TCGA-D3-A8GM-06 2 77745989 77745989 T C LRRTM4 Missense_Mutation p.T336A 0.25 tolerated(0.07) benign(0.004) TCGA-D3-A8GM-06 2 77746822 77746822 T C LRRTM4 Missense_Mutation p.N58S 0.19 tolerated(0.08) probably_damaging(0.993) TCGA-D3-A8GM-06 2 79312392 79312392 C T REG1B Missense_Mutation p.D151N 0.36 tolerated(0.06) possibly_damaging(0.904) TCGA-D3-A8GM-06 2 79313950 79313950 C T REG1B Nonsense_Mutation p.W57* 0.14 TCGA-D3-A8GM-06 2 85820130 85820130 C T VAMP5 Silent p.I67I 0.21 TCGA-D3-A8GM-06 2 85850758 85850758 C T USP39 Intron 0.37 TCGA-D3-A8GM-06 2 87141013 87141013 C T RGPD1 5'Flank 0.15 TCGA-D3-A8GM-06 2 88327405 88327405 G A KRCC1 Silent p.V226V 0.19 TCGA-D3-A8GM-06 2 88409921 88409921 G A SMYD1 Missense_Mutation p.E455K 0.13 tolerated(0.1) benign(0.089) TCGA-D3-A8GM-06 2 88874854 88874854 G A EIF2AK3 Missense_Mutation p.P716L 0.19 tolerated(0.24) benign(0.001) TCGA-D3-A8GM-06 2 88890045 88890045 A G EIF2AK3 Missense_Mutation p.Y361H 0.38 tolerated(0.15) benign(0.401) TCGA-D3-A8GM-06 2 8925937 8925937 G A KIDINS220 Silent p.S721S 0.36 TCGA-D3-A8GM-06 2 89292010 89292010 C T IGKV1-8 Missense_Mutation p.G88E 0.15 deleterious(0.03) possibly_damaging(0.632) TCGA-D3-A8GM-06 2 89384755 89384755 C T IGKV3-15 Missense_Mutation p.G88E 0.14 deleterious(0.02) benign(0.216) TCGA-D3-A8GM-06 2 90044129 90044129 G A IGKV2D-24 Missense_Mutation p.G17E 0.42 tolerated(0.07) benign(0.229) TCGA-D3-A8GM-06 2 9484930 9484930 G A ASAP2 Splice_Site p.X341_splice 0.14 TCGA-D3-A8GM-06 2 95773969 95773969 G T MRPS5 Missense_Mutation p.N196K 0.13 tolerated(0.62) benign(0.004) TCGA-D3-A8GM-06 2 95773978 95773978 C T MRPS5 Nonsense_Mutation p.W193* 0.11 TCGA-D3-A8GM-06 2 95940429 95940429 C T PROM2 Silent p.F32F 0.20 TCGA-D3-A8GM-06 2 96076637 96076637 C T FAHD2A Missense_Mutation p.A183V 0.46 tolerated(1) benign(0.163) TCGA-D3-A8GM-06 2 96781451 96781451 C T ADRA2B Silent p.P146P 0.14 TCGA-D3-A8GM-06 2 96789782 96789782 G A ASTL Missense_Mutation p.S368F 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-D3-A8GM-06 2 97911152 97911152 C T ANKRD36 Missense_Mutation p.R1610C 0.14 deleterious(0.03) possibly_damaging(0.635) TCGA-D3-A8GM-06 2 98177136 98177136 G A ANKRD36B RNA 0.14 TCGA-D3-A8GM-06 2 98373704 98373704 G A TMEM131 Missense_Mutation p.S1837F 0.40 deleterious_low_confidence(0.02) benign(0.1) TCGA-D3-A8GM-06 2 98451382 98451382 G A TMEM131 Missense_Mutation p.P271S 0.42 deleterious(0.01) possibly_damaging(0.781) TCGA-D3-A8GM-06 2 98458340 98458340 G A TMEM131 Missense_Mutation p.P221S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 2 98709690 98709690 T C VWA3B Silent p.L45L 0.21 TCGA-D3-A8GM-06 3 101046575 101046575 G A SENP7 Missense_Mutation p.P984S 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 10146177 10146177 G A FANCD2OS Silent p.I94I 0.45 TCGA-D3-A8GM-06 3 10370801 10370801 G A ATP2B2 Silent p.V1143V 0.34 TCGA-D3-A8GM-06 3 10379971 10379971 C T ATP2B2 Silent p.E1103E 0.32 TCGA-D3-A8GM-06 3 10382204 10382204 G A ATP2B2 Silent p.T1034T 0.27 TCGA-D3-A8GM-06 3 108160048 108160048 G A MYH15 Silent p.I925I 0.33 TCGA-D3-A8GM-06 3 10861463 10861463 G A SLC6A11 Nonsense_Mutation p.W153* 0.37 TCGA-D3-A8GM-06 3 10861464 10861464 G A SLC6A11 Nonsense_Mutation p.W153* 0.36 TCGA-D3-A8GM-06 3 108639370 108639370 C T GUCA1C Missense_Mutation p.M89I 0.24 tolerated(1) benign(0) TCGA-D3-A8GM-06 3 108754206 108754206 G A MORC1 Silent p.I480I 0.28 TCGA-D3-A8GM-06 3 108818274 108818274 C T MORC1 Silent p.T118T 0.28 TCGA-D3-A8GM-06 3 109023405 109023405 C T DPPA2 Missense_Mutation p.M257I 0.18 deleterious(0.01) benign(0.425) TCGA-D3-A8GM-06 3 109049326 109049326 T C DPPA4 Intron 0.31 TCGA-D3-A8GM-06 3 109049551 109049551 C T DPPA4 Missense_Mutation p.E167K 0.22 tolerated(0.09) benign(0.029) TCGA-D3-A8GM-06 3 10976738 10976738 C T SLC6A11 Silent p.I533I 0.30 TCGA-D3-A8GM-06 3 11072954 11072954 C T SLC6A1 Missense_Mutation p.S472F 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-D3-A8GM-06 3 111263901 111263901 G A CD96 Missense_Mutation p.E24K 0.21 tolerated(0.13) benign(0.393) TCGA-D3-A8GM-06 3 111298074 111298074 G A CD96 Silent p.K264K 0.31 TCGA-D3-A8GM-06 3 111319758 111319758 T A CD96 Missense_Mutation p.L378I 0.47 tolerated(0.09) possibly_damaging(0.505) TCGA-D3-A8GM-06 3 111603464 111603464 G A PHLDB2 Nonsense_Mutation p.W180* 0.28 TCGA-D3-A8GM-06 3 111664163 111664163 G A PHLDB2 Missense_Mutation p.G816R 0.29 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 3 111664164 111664164 G A PHLDB2 Missense_Mutation p.G816E 0.29 tolerated(0.09) possibly_damaging(0.742) TCGA-D3-A8GM-06 3 111719726 111719726 C T TAGLN3 Silent p.F96F 0.34 TCGA-D3-A8GM-06 3 111888146 111888146 A G SLC9C1 Silent p.Y983Y 0.30 TCGA-D3-A8GM-06 3 111927096 111927096 T C SLC9C1 Missense_Mutation p.I639V 0.35 tolerated(0.15) benign(0.024) TCGA-D3-A8GM-06 3 11301311 11301311 C T HRH1 Silent p.I196I 0.34 TCGA-D3-A8GM-06 3 113374873 113374873 T G KIAA2018 Missense_Mutation p.I1886L 0.32 benign(0.028) TCGA-D3-A8GM-06 3 113375919 113375919 G A KIAA2018 Missense_Mutation p.S1537F 0.36 possibly_damaging(0.613) TCGA-D3-A8GM-06 3 113378714 113378714 G A KIAA2018 Silent p.P605P 0.38 TCGA-D3-A8GM-06 3 113522515 113522515 C T ATP6V1A Missense_Mutation p.P527L 0.29 deleterious(0.03) benign(0.143) TCGA-D3-A8GM-06 3 113601680 113601680 G A GRAMD1C Splice_Site p.X180_splice 0.39 TCGA-D3-A8GM-06 3 113847575 113847575 G A DRD3 Silent p.I397I 0.32 TCGA-D3-A8GM-06 3 114014616 114014616 C T TIGIT Nonsense_Mutation p.Q96* 0.42 TCGA-D3-A8GM-06 3 11468290 11468290 T C ATG7 Missense_Mutation p.Y657H 0.35 deleterious(0.01) possibly_damaging(0.753) TCGA-D3-A8GM-06 3 119132915 119132915 C T ARHGAP31 Silent p.T713T 0.30 TCGA-D3-A8GM-06 3 119132916 119132916 C T ARHGAP31 Missense_Mutation p.P714S 0.29 tolerated(0.22) benign(0.043) TCGA-D3-A8GM-06 3 119536075 119536075 T C NR1I2 3'UTR 0.31 TCGA-D3-A8GM-06 3 119886652 119886652 G T GPR156 Missense_Mutation p.L558M 0.36 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A8GM-06 3 119886920 119886920 C T GPR156 Silent p.G468G 0.37 TCGA-D3-A8GM-06 3 120428753 120428753 G A RABL3 Missense_Mutation p.H48Y 0.38 tolerated(0.05) possibly_damaging(0.887) TCGA-D3-A8GM-06 3 120469688 120469688 C T GTF2E1 Missense_Mutation p.R97C 0.37 deleterious(0) benign(0.141) TCGA-D3-A8GM-06 3 121345807 121345807 C T FBXO40 3'UTR 0.29 TCGA-D3-A8GM-06 3 121448807 121448807 C T GOLGB1 Missense_Mutation p.E52K 0.28 possibly_damaging(0.476) TCGA-D3-A8GM-06 3 121591602 121591602 C T EAF2 Nonsense_Mutation p.R235* 0.39 TCGA-D3-A8GM-06 3 121616255 121616255 C T SLC15A2 Silent p.L72L 0.32 TCGA-D3-A8GM-06 3 121634114 121634114 C T SLC15A2 Missense_Mutation p.S190F 0.29 deleterious(0) benign(0.167) TCGA-D3-A8GM-06 3 121641931 121641931 C T SLC15A2 Silent p.F304F 0.35 TCGA-D3-A8GM-06 3 121647395 121647395 C T SLC15A2 Missense_Mutation p.S445F 0.21 deleterious(0.02) benign(0.103) TCGA-D3-A8GM-06 3 121828132 121828132 C - CD86 Frame_Shift_Del p.P243Qfs*18 0.21 TCGA-D3-A8GM-06 3 121975960 121975960 C T CASR Missense_Mutation p.A73V 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-D3-A8GM-06 3 122002892 122002892 G A CASR Silent p.V707V 0.27 TCGA-D3-A8GM-06 3 122003021 122003021 G A CASR Silent p.V750V 0.22 TCGA-D3-A8GM-06 3 122133589 122133589 A T WDR5B Missense_Mutation p.S263T 0.34 deleterious(0.05) benign(0.071) TCGA-D3-A8GM-06 3 122437236 122437236 A - PARP14 Frame_Shift_Del p.K1415Rfs*35 0.09 TCGA-D3-A8GM-06 3 122631758 122631759 - G SEMA5B Frame_Shift_Ins p.R940Pfs*61 0.12 TCGA-D3-A8GM-06 3 122641175 122641175 G A SEMA5B Silent p.V518V 0.33 TCGA-D3-A8GM-06 3 123038647 123038647 C T ADCY5 Silent p.A710A 0.30 TCGA-D3-A8GM-06 3 123366154 123366154 G A MYLK Silent p.I1512I 0.35 TCGA-D3-A8GM-06 3 123419614 123419614 G A MYLK Silent p.L901L 0.26 TCGA-D3-A8GM-06 3 123946904 123946904 C T KALRN Silent p.F45F 0.31 TCGA-D3-A8GM-06 3 124153238 124153238 G A KALRN Missense_Mutation p.G970S 0.29 tolerated(0.15) benign(0.147) TCGA-D3-A8GM-06 3 124174139 124174139 G A KALRN Missense_Mutation p.R1221K 0.30 tolerated(0.71) benign(0.122) TCGA-D3-A8GM-06 3 124209643 124209643 T G KALRN Missense_Mutation p.L1498W 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 124483370 124483370 G A ITGB5 Silent p.L724L 0.19 TCGA-D3-A8GM-06 3 125822586 125822586 C T ALDH1L1 3'UTR 0.46 TCGA-D3-A8GM-06 3 125831642 125831642 C T ALDH1L1 Missense_Mutation p.E732K 0.27 tolerated(0.11) benign(0.018) TCGA-D3-A8GM-06 3 126270949 126270949 C T C3orf22 Missense_Mutation p.E36K 0.25 deleterious(0.01) possibly_damaging(0.801) TCGA-D3-A8GM-06 3 126707501 126707501 C T PLXNA1 Missense_Mutation p.P22L 0.42 tolerated_low_confidence(0.31) benign(0.001) TCGA-D3-A8GM-06 3 126730823 126730823 C T PLXNA1 Missense_Mutation p.S712F 0.22 deleterious(0) possibly_damaging(0.828) TCGA-D3-A8GM-06 3 126730824 126730824 C T PLXNA1 Silent p.S712S 0.23 TCGA-D3-A8GM-06 3 126735418 126735418 C T PLXNA1 Missense_Mutation p.P1025S 0.32 tolerated(0.32) benign(0.026) TCGA-D3-A8GM-06 3 127339636 127339636 C T MCM2 Silent p.I787I 0.34 TCGA-D3-A8GM-06 3 127381124 127381124 C T PODXL2 Silent p.I392I 0.43 TCGA-D3-A8GM-06 3 127398860 127398860 C T ABTB1 Silent p.S354S 0.13 TCGA-D3-A8GM-06 3 127439900 127439900 A T MGLL Missense_Mutation p.F169Y 0.38 deleterious(0.03) benign(0.122) TCGA-D3-A8GM-06 3 127642490 127642490 G A KBTBD12 Missense_Mutation p.D196N 0.36 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GM-06 3 12957210 12957210 G A IQSEC1 Missense_Mutation p.P696S 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-D3-A8GM-06 3 130159248 130159248 G A COL6A5 Silent p.K2022K 0.27 TCGA-D3-A8GM-06 3 130159546 130159546 G A COL6A5 Missense_Mutation p.D2122N 0.30 tolerated(0.22) benign(0.005) TCGA-D3-A8GM-06 3 130354595 130354595 G A COL6A6 Missense_Mutation p.R1694K 0.32 tolerated(0.28) benign(0.003) TCGA-D3-A8GM-06 3 130737439 130737439 T C ASTE1 Missense_Mutation p.H475R 0.27 tolerated(0.25) benign(0.157) TCGA-D3-A8GM-06 3 130743433 130743433 G A ASTE1 Missense_Mutation p.R240C 0.14 tolerated(0.14) benign(0.01) TCGA-D3-A8GM-06 3 131300488 131300488 G A CPNE4 Missense_Mutation p.P268S 0.28 tolerated(0.12) benign(0.007) TCGA-D3-A8GM-06 3 131404772 131404772 C T CPNE4 Missense_Mutation p.E180K 0.38 deleterious(0.02) benign(0.378) TCGA-D3-A8GM-06 3 131442436 131442436 T A CPNE4 Missense_Mutation p.N72Y 0.33 deleterious(0) benign(0.354) TCGA-D3-A8GM-06 3 131624150 131624150 G A CPNE4 Silent p.P46P 0.31 TCGA-D3-A8GM-06 3 132047160 132047160 C T ACPP Missense_Mutation p.P57L 0.15 tolerated(0.2) benign(0.258) TCGA-D3-A8GM-06 3 133098600 133098600 C T TMEM108 Silent p.F15F 0.28 TCGA-D3-A8GM-06 3 133109163 133109163 C T TMEM108 Silent p.S530S 0.35 TCGA-D3-A8GM-06 3 133193851 133193851 C T BFSP2 3'UTR 0.32 TCGA-D3-A8GM-06 3 133941283 133941283 G A RYK Silent p.F109F 0.25 TCGA-D3-A8GM-06 3 13420455 13420455 C T NUP210 Silent p.R334R 0.26 TCGA-D3-A8GM-06 3 135721013 135721013 T A PPP2R3A Missense_Mutation p.S225T 0.24 deleterious_low_confidence(0.01) benign(0.142) TCGA-D3-A8GM-06 3 135870134 135870134 T C MSL2 Missense_Mutation p.N530S 0.33 deleterious(0.05) probably_damaging(0.99) TCGA-D3-A8GM-06 3 137822766 137822766 A G DZIP1L Silent p.F16F 0.13 TCGA-D3-A8GM-06 3 138183268 138183268 C T ESYT3 Missense_Mutation p.P333S 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 138665109 138665109 G A FOXL2 Silent p.P152P 0.46 TCGA-D3-A8GM-06 3 138739253 138739253 G A PRR23B Missense_Mutation p.P84L 0.42 deleterious(0) possibly_damaging(0.842) TCGA-D3-A8GM-06 3 139062833 139062833 C T MRPS22 5'UTR 0.26 TCGA-D3-A8GM-06 3 139894906 139894906 C T CLSTN2 Missense_Mutation p.P75S 0.27 tolerated(0.1) benign(0.119) TCGA-D3-A8GM-06 3 140866149 140866149 C T SPSB4 3'UTR 0.15 TCGA-D3-A8GM-06 3 141011174 141011174 C T ACPL2 Silent p.L190L 0.29 TCGA-D3-A8GM-06 3 141291545 141291545 T - RASA2 Frame_Shift_Del p.L422* 0.22 TCGA-D3-A8GM-06 3 141497618 141497618 G A GRK7 Silent p.K164K 0.21 TCGA-D3-A8GM-06 3 141891225 141891225 A T GK5 Missense_Mutation p.V406E 0.24 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GM-06 3 142151556 142151556 T G XRN1 Silent p.V85V 0.27 TCGA-D3-A8GM-06 3 142151722 142151722 T C XRN1 Missense_Mutation p.D30G 0.06 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 142430752 142430752 T C PLS1 Missense_Mutation p.I598T 0.14 deleterious(0.04) benign(0.393) TCGA-D3-A8GM-06 3 142606508 142606508 T C PCOLCE2 Intron 0.24 TCGA-D3-A8GM-06 3 143704405 143704405 T C C3orf58 Silent p.G226G 0.17 TCGA-D3-A8GM-06 3 1445073 1445073 C T CNTN6 Missense_Mutation p.H1020Y 0.32 tolerated(1) benign(0) TCGA-D3-A8GM-06 3 148458851 148458851 G A AGTR1 Missense_Mutation p.G10D 0.38 tolerated(0.61) benign(0.002) TCGA-D3-A8GM-06 3 148558528 148558528 C T CPB1 Missense_Mutation p.R110C 0.24 deleterious(0.03) possibly_damaging(0.628) TCGA-D3-A8GM-06 3 148577661 148577661 A C CPB1 Missense_Mutation p.T376P 0.36 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 3 148601535 148601535 C T CPA3 Missense_Mutation p.S305F 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 148802593 148802593 G A HLTF Missense_Mutation p.P35L 0.28 tolerated_low_confidence(0.09) benign(0.15) TCGA-D3-A8GM-06 3 148927988 148927988 T C CP Silent p.S191S 0.15 TCGA-D3-A8GM-06 3 150377837 150377837 C T FAM194A Missense_Mutation p.G612R 0.37 tolerated(0.1) benign(0.379) TCGA-D3-A8GM-06 3 150645906 150645906 T C CLRN1 Silent p.K185K 0.30 TCGA-D3-A8GM-06 3 150903234 150903234 G A MED12L Missense_Mutation p.E538K 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 3 151056309 151056309 A G P2RY12 Missense_Mutation p.Y109H 0.32 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GM-06 3 151154735 151154735 A T IGSF10 Silent p.I2538I 0.28 TCGA-D3-A8GM-06 3 151164167 151164167 C T IGSF10 Missense_Mutation p.R1201K 0.33 tolerated(0.38) benign(0.023) TCGA-D3-A8GM-06 3 151165522 151165522 C T IGSF10 Silent p.R749R 0.26 TCGA-D3-A8GM-06 3 151171489 151171489 C T IGSF10 Missense_Mutation p.R133Q 0.32 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 3 151545418 151545418 C T AADAC Missense_Mutation p.P220S 0.34 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 3 154013110 154013110 G A DHX36 Missense_Mutation p.P523L 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 3 154013111 154013111 G A DHX36 Missense_Mutation p.P523S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GM-06 3 154147428 154147428 C T GPR149 5'UTR 0.30 TCGA-D3-A8GM-06 3 15515538 15515538 A G COLQ Missense_Mutation p.F202S 0.38 tolerated(0.51) unknown(0) TCGA-D3-A8GM-06 3 155655428 155655428 C T GMPS Nonsense_Mutation p.R677* 0.32 TCGA-D3-A8GM-06 3 157154660 157154660 A C PTX3 5'UTR 0.14 TCGA-D3-A8GM-06 3 157160606 157160606 C T PTX3 Silent p.A328A 0.28 TCGA-D3-A8GM-06 3 158289029 158289029 G A MLF1 5'Flank 0.38 TCGA-D3-A8GM-06 3 159605670 159605670 G A IQCJ-SCHIP1 Silent p.R466R 0.38 TCGA-D3-A8GM-06 3 159711587 159711587 T C IL12A Missense_Mutation p.F188L 0.31 tolerated(0.2) benign(0.031) TCGA-D3-A8GM-06 3 161221388 161221388 G A OTOL1 Silent p.K364K 0.34 TCGA-D3-A8GM-06 3 164750406 164750406 G A SI Silent p.I880I 0.28 TCGA-D3-A8GM-06 3 164764781 164764781 G A SI Missense_Mutation p.P579S 0.22 tolerated(0.11) benign(0.015) TCGA-D3-A8GM-06 3 164907798 164907798 T G SLITRK3 Missense_Mutation p.E274A 0.32 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GM-06 3 165547663 165547664 - A BCHE Frame_Shift_Ins p.P387Sfs*5 0.14 TCGA-D3-A8GM-06 3 167000248 167000248 G A ZBBX Missense_Mutation p.P678S 0.25 deleterious(0.03) possibly_damaging(0.453) TCGA-D3-A8GM-06 3 167189583 167189583 A G SERPINI2 Missense_Mutation p.F14L 0.38 tolerated(0.65) benign(0.005) TCGA-D3-A8GM-06 3 167223161 167223161 C T WDR49 Missense_Mutation p.E588K 0.16 tolerated(0.09) benign(0.01) TCGA-D3-A8GM-06 3 168269700 168269700 A C MIR551B RNA 0.31 TCGA-D3-A8GM-06 3 168810804 168810804 G A MECOM Nonsense_Mutation p.R913* 0.34 TCGA-D3-A8GM-06 3 169644418 169644418 G A SAMD7 Missense_Mutation p.G123E 0.32 tolerated(1) benign(0.118) TCGA-D3-A8GM-06 3 169644419 169644419 G A SAMD7 Silent p.G123G 0.32 TCGA-D3-A8GM-06 3 17052786 17052786 G A PLCL2 Missense_Mutation p.E524K 0.35 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 3 171406614 171406614 T A PLD1 Missense_Mutation p.H464L 0.46 deleterious(0.02) probably_damaging(0.96) TCGA-D3-A8GM-06 3 17226675 17226675 G A TBC1D5 Missense_Mutation p.S615F 0.28 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 3 17279834 17279834 G A TBC1D5 Missense_Mutation p.S470F 0.27 deleterious(0) possibly_damaging(0.62) TCGA-D3-A8GM-06 3 17300059 17300059 G A TBC1D5 Nonsense_Mutation p.Q424* 0.31 TCGA-D3-A8GM-06 3 173525513 173525513 C T NLGN1 Silent p.I179I 0.34 TCGA-D3-A8GM-06 3 17550051 17550051 G A TBC1D5 Silent p.S4S 0.31 TCGA-D3-A8GM-06 3 176768264 176768264 A G TBL1XR1 Splice_Site p.X187_splice 0.16 TCGA-D3-A8GM-06 3 181430799 181430799 G A SOX2 Missense_Mutation p.M217I 0.29 deleterious(0.01) benign(0.002) TCGA-D3-A8GM-06 3 183107531 183107531 G A MCF2L2 Missense_Mutation p.A38V 0.37 deleterious(0.01) possibly_damaging(0.84) TCGA-D3-A8GM-06 3 183211911 183211911 T C KLHL6 Missense_Mutation p.N436D 0.27 tolerated(0.22) benign(0.045) TCGA-D3-A8GM-06 3 183756843 183756843 C T HTR3D 3'UTR 0.64 TCGA-D3-A8GM-06 3 183777662 183777662 G A HTR3C Silent p.L324L 0.32 TCGA-D3-A8GM-06 3 183777663 183777663 G A HTR3C Missense_Mutation p.E325K 0.32 deleterious(0.01) benign(0.16) TCGA-D3-A8GM-06 3 183777792 183777792 G A HTR3C Missense_Mutation p.G368R 0.30 tolerated(0.26) benign(0.061) TCGA-D3-A8GM-06 3 183823625 183823625 G A HTR3E Missense_Mutation p.D291N 0.27 deleterious(0.04) possibly_damaging(0.858) TCGA-D3-A8GM-06 3 183824576 183824576 C T HTR3E 3'Flank 0.19 TCGA-D3-A8GM-06 3 183860391 183860391 G A EIF2B5 Missense_Mutation p.G516R 0.35 tolerated(0.06) probably_damaging(0.994) TCGA-D3-A8GM-06 3 183900644 183900644 C T AP2M1 Silent p.S387S 0.30 TCGA-D3-A8GM-06 3 184044729 184044729 C T EIF4G1 Missense_Mutation p.A1136V 0.12 deleterious(0.03) benign(0.069) TCGA-D3-A8GM-06 3 184090505 184090505 G A THPO Silent p.P286P 0.26 TCGA-D3-A8GM-06 3 184090506 184090506 G A THPO Missense_Mutation p.P286L 0.26 tolerated_low_confidence(0.1) benign(0.006) TCGA-D3-A8GM-06 3 185960299 185960299 T C DGKG Missense_Mutation p.N607S 0.31 deleterious(0.04) probably_damaging(0.981) TCGA-D3-A8GM-06 3 186338698 186338698 G A AHSG Silent p.R361R 0.34 TCGA-D3-A8GM-06 3 186370118 186370118 G T FETUB Nonsense_Mutation p.E283* 0.32 TCGA-D3-A8GM-06 3 186459996 186459996 C T KNG1 Missense_Mutation p.S604L 0.28 deleterious(0) possibly_damaging(0.518) TCGA-D3-A8GM-06 3 186510616 186510616 A G RFC4 Silent p.C177C 0.27 TCGA-D3-A8GM-06 3 187416747 187416747 G A RTP2 Missense_Mutation p.L73F 0.27 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 3 189028183 189028183 G A TPRG1 Missense_Mutation p.G163E 0.26 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 3 189604206 189604206 C T TP63 Missense_Mutation p.S458L 0.32 deleterious(0) benign(0.162) TCGA-D3-A8GM-06 3 189612011 189612011 A T TP63 Missense_Mutation p.K588I 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.30 deleterious(0.05) benign(0.012) TCGA-D3-A8GM-06 3 191178991 191178991 C T PYDC2 Missense_Mutation p.L14F 0.34 deleterious(0.01) benign(0.199) TCGA-D3-A8GM-06 3 191861917 191861917 C T FGF12 Splice_Site p.X205_splice 0.35 TCGA-D3-A8GM-06 3 193029631 193029631 G A ATP13A5 Nonsense_Mutation p.Q807* 0.27 TCGA-D3-A8GM-06 3 193036877 193036877 C T ATP13A5 Missense_Mutation p.E646K 0.25 tolerated(0.36) benign(0.077) TCGA-D3-A8GM-06 3 193052738 193052738 C T ATP13A5 Missense_Mutation p.R365Q 0.25 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GM-06 3 193061845 193061845 C T ATP13A5 Splice_Site p.X272_splice 0.36 TCGA-D3-A8GM-06 3 193082014 193082014 G A ATP13A5 Missense_Mutation p.S40F 0.25 tolerated(0.5) benign(0.026) TCGA-D3-A8GM-06 3 193159344 193159344 C T ATP13A4 Missense_Mutation p.D784N 0.34 tolerated(0.36) benign(0.004) TCGA-D3-A8GM-06 3 193185170 193185170 C T ATP13A4 Missense_Mutation p.G350E 0.32 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 3 193220394 193220394 A T ATP13A4 Missense_Mutation p.I90K 0.37 tolerated(0.96) benign(0.001) TCGA-D3-A8GM-06 3 193220405 193220405 C T ATP13A4 Nonsense_Mutation p.W86* 0.35 TCGA-D3-A8GM-06 3 193272640 193272640 G A ATP13A4 5'UTR 0.36 TCGA-D3-A8GM-06 3 194117189 194117189 G A GP5 3'UTR 0.24 TCGA-D3-A8GM-06 3 194146253 194146253 C T ATP13A3 Missense_Mutation p.C1044Y 0.30 tolerated(0.05) benign(0.369) TCGA-D3-A8GM-06 3 19491664 19491664 C T KCNH8 Missense_Mutation p.S481F 0.33 tolerated(0.14) probably_damaging(1) TCGA-D3-A8GM-06 3 195022318 195022318 G A ACAP2 Missense_Mutation p.P461S 0.28 deleterious(0.01) probably_damaging(0.974) TCGA-D3-A8GM-06 3 195605315 195605315 A G TNK2 Splice_Site p.X450_splice 0.18 TCGA-D3-A8GM-06 3 196083577 196083577 G A UBXN7 Silent p.V483V 0.30 TCGA-D3-A8GM-06 3 196754705 196754705 G A MFI2 Silent p.A42A 0.26 TCGA-D3-A8GM-06 3 197640655 197640655 G A IQCG Intron 0.37 TCGA-D3-A8GM-06 3 19974982 19974982 A G EFHB Missense_Mutation p.C177R 0.29 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-D3-A8GM-06 3 20225246 20225246 C A SGOL1 Missense_Mutation p.V65F 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A8GM-06 3 21706399 21706399 G A ZNF385D Silent p.N48N 0.30 TCGA-D3-A8GM-06 3 24164320 24164320 G A THRB 3'UTR 0.30 TCGA-D3-A8GM-06 3 27152793 27152793 C T NEK10 Nonsense_Mutation p.W1163* 0.32 TCGA-D3-A8GM-06 3 27490219 27490219 C T SLC4A7 Missense_Mutation p.R62H 0.11 tolerated(0.97) benign(0.394) TCGA-D3-A8GM-06 3 27490242 27490242 C T SLC4A7 Silent p.E54E 0.25 TCGA-D3-A8GM-06 3 27758384 27758384 C T EOMES 3'UTR 0.55 TCGA-D3-A8GM-06 3 27760335 27760335 A C EOMES Missense_Mutation p.V403G 0.33 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 3 2908496 2908496 T C CNTN4 Missense_Mutation p.V172A 0.31 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 3 30032741 30032741 C T RBMS3 Intron 0.35 TCGA-D3-A8GM-06 3 30769778 30769778 C A GADL1 Missense_Mutation p.D508Y 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 30769779 30769779 C T GADL1 Missense_Mutation p.M507I 0.26 tolerated(0.64) benign(0.014) TCGA-D3-A8GM-06 3 3116507 3116507 T A IL5RA Nonsense_Mutation p.K379* 0.37 TCGA-D3-A8GM-06 3 3192656 3192657 - T CRBN Frame_Shift_Ins p.D408Rfs*23 0.29 TCGA-D3-A8GM-06 3 33738396 33738396 A T CLASP2 Missense_Mutation p.S75R 0.31 deleterious(0.01) possibly_damaging(0.613) TCGA-D3-A8GM-06 3 33738397 33738397 C T CLASP2 Missense_Mutation p.S75N 0.31 deleterious(0.02) benign(0.282) TCGA-D3-A8GM-06 3 35750523 35750523 G A ARPP21 Intron 0.21 TCGA-D3-A8GM-06 3 36485081 36485081 T A STAC Missense_Mutation p.Y113N 0.32 deleterious(0) benign(0.16) TCGA-D3-A8GM-06 3 36874508 36874508 C T TRANK1 Missense_Mutation p.R2145Q 0.12 deleterious(0.01) benign(0.001) TCGA-D3-A8GM-06 3 36899195 36899195 G A TRANK1 Missense_Mutation p.P629L 0.28 tolerated(0.06) benign(0.005) TCGA-D3-A8GM-06 3 37356946 37356946 C A GOLGA4 Missense_Mutation p.Q446K 0.11 probably_damaging(0.998) TCGA-D3-A8GM-06 3 37476692 37476692 G C C3orf35 3'UTR 0.33 TCGA-D3-A8GM-06 3 37476693 37476693 A C C3orf35 3'UTR 0.33 TCGA-D3-A8GM-06 3 37584017 37584017 G A ITGA9 Missense_Mutation p.E544K 0.32 tolerated(0.26) possibly_damaging(0.792) TCGA-D3-A8GM-06 3 38101343 38101343 G A DLEC1 Missense_Mutation p.G225S 0.34 deleterious(0.02) benign(0.281) TCGA-D3-A8GM-06 3 38138123 38138123 C T DLEC1 Silent p.I745I 0.31 TCGA-D3-A8GM-06 3 38592138 38592138 G A SCN5A Nonsense_Mutation p.Q1909* 0.35 TCGA-D3-A8GM-06 3 38751086 38751086 C T SCN10A Nonsense_Mutation p.W1388* 0.35 TCGA-D3-A8GM-06 3 38798309 38798309 G A SCN10A Silent p.F382F 0.34 TCGA-D3-A8GM-06 3 3887078 3887078 G A LRRN1 Silent p.L251L 0.36 TCGA-D3-A8GM-06 3 38889226 38889226 C T SCN11A Missense_Mutation p.M1445I 0.35 tolerated(0.29) benign(0.006) TCGA-D3-A8GM-06 3 39227020 39227020 C T XIRP1 Missense_Mutation p.G1306E 0.35 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 3 39228525 39228525 C T XIRP1 Silent p.K804K 0.35 TCGA-D3-A8GM-06 3 39230820 39230820 C T XIRP1 Silent p.K39K 0.31 TCGA-D3-A8GM-06 3 40291730 40291730 C T MYRIP Silent p.S760S 0.21 TCGA-D3-A8GM-06 3 40293461 40293461 G A MYRIP Missense_Mutation p.E840K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-D3-A8GM-06 3 41877434 41877434 C T ULK4 Silent p.R562R 0.34 TCGA-D3-A8GM-06 3 42240726 42240726 G A TRAK1 Missense_Mutation p.A391T 0.32 tolerated(0.11) benign(0.027) TCGA-D3-A8GM-06 3 42905986 42905986 C T ACKR2 5'UTR 0.45 TCGA-D3-A8GM-06 3 43121512 43121512 G A POMGNT2 Missense_Mutation p.P471L 0.29 tolerated(0.44) benign(0.002) TCGA-D3-A8GM-06 3 443320 443320 G A CHL1 Missense_Mutation p.E1133K 0.26 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 3 44409105 44409105 G A TCAIM Silent p.R159R 0.18 TCGA-D3-A8GM-06 3 44611998 44611998 C T ZKSCAN7 Missense_Mutation p.P466S 0.32 deleterious(0.03) benign(0.1) TCGA-D3-A8GM-06 3 45785245 45785245 C T SACM1L 3'UTR 0.46 TCGA-D3-A8GM-06 3 45785246 45785246 C T SACM1L 3'UTR 0.42 TCGA-D3-A8GM-06 3 45817404 45817404 G A SLC6A20 Missense_Mutation p.S144F 0.33 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GM-06 3 45943328 45943328 G A CCR9 Missense_Mutation p.E350K 0.35 tolerated(0.39) benign(0.04) TCGA-D3-A8GM-06 3 46009718 46009718 C A FYCO1 Missense_Mutation p.G370C 0.16 deleterious(0.04) benign(0.285) TCGA-D3-A8GM-06 3 46245679 46245679 G A CCR1 Silent p.S42S 0.41 TCGA-D3-A8GM-06 3 46713684 46713684 G A ALS2CL Missense_Mutation p.S827F 0.39 deleterious(0) benign(0.216) TCGA-D3-A8GM-06 3 46728503 46728503 G A ALS2CL Silent p.L168L 0.29 TCGA-D3-A8GM-06 3 47164598 47164598 A G SETD2 Missense_Mutation p.Y510H 0.31 tolerated_low_confidence(0.1) benign(0.007) TCGA-D3-A8GM-06 3 47318787 47318787 G A KIF9 Silent p.Y26Y 0.27 TCGA-D3-A8GM-06 3 47449423 47449423 G A PTPN23 Missense_Mutation p.E388K 0.42 unknown(0) TCGA-D3-A8GM-06 3 47451443 47451443 C T PTPN23 Missense_Mutation p.R719W 0.46 unknown(0) TCGA-D3-A8GM-06 3 47887278 47887278 G A DHX30 Missense_Mutation p.R343H 0.35 deleterious(0.03) benign(0.018) TCGA-D3-A8GM-06 3 47888040 47888040 G A DHX30 Missense_Mutation p.R493H 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 3 48461490 48461490 G A PLXNB1 Silent p.P735P 0.39 TCGA-D3-A8GM-06 3 4847802 4847802 A C ITPR1 Missense_Mutation p.I2360L 0.32 deleterious(0.01) benign(0.259) TCGA-D3-A8GM-06 3 48613116 48613116 G A COL7A1 Silent p.P1974P 0.32 TCGA-D3-A8GM-06 3 48689431 48689431 G - CELSR3 Frame_Shift_Del p.S1935Afs*4 0.19 TCGA-D3-A8GM-06 3 48696813 48696813 C A CELSR3 Silent p.V1085V 0.16 TCGA-D3-A8GM-06 3 48845115 48845115 G A PRKAR2A Missense_Mutation p.P89S 0.35 deleterious(0.04) benign(0.003) TCGA-D3-A8GM-06 3 49050943 49050943 C T WDR6 Missense_Mutation p.S689L 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 3 49067945 49067945 G A QRICH1 Silent p.I757I 0.25 TCGA-D3-A8GM-06 3 49158642 49158642 T C LAMB2 3'UTR 0.24 TCGA-D3-A8GM-06 3 49278785 49278785 G A CCDC36 Missense_Mutation p.E120K 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A8GM-06 3 49679956 49679956 C T BSN Missense_Mutation p.P297S 0.38 unknown(0) TCGA-D3-A8GM-06 3 49690858 49690858 T A BSN Missense_Mutation p.F1290Y 0.43 unknown(0) TCGA-D3-A8GM-06 3 49690942 49690942 C T BSN Missense_Mutation p.A1318V 0.17 unknown(0) TCGA-D3-A8GM-06 3 49849934 49849934 G T UBA7 Missense_Mutation p.H201N 0.32 deleterious(0.02) benign(0.027) TCGA-D3-A8GM-06 3 50332483 50332483 G A HYAL3 Missense_Mutation p.T184M 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 50334048 50334048 C A NAT6 Nonsense_Mutation p.E305* 0.31 TCGA-D3-A8GM-06 3 51101920 51101920 G A DOCK3 Missense_Mutation p.M119I 0.36 tolerated(0.14) probably_damaging(0.943) TCGA-D3-A8GM-06 3 51263121 51263121 G A DOCK3 Missense_Mutation p.D432N 0.36 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A8GM-06 3 51284209 51284209 C T DOCK3 Nonsense_Mutation p.R719* 0.26 TCGA-D3-A8GM-06 3 51395395 51395395 C T DOCK3 Missense_Mutation p.H1591Y 0.39 tolerated(0.11) benign(0.015) TCGA-D3-A8GM-06 3 51458111 51458111 G A VPRBP Silent p.V342V 0.30 TCGA-D3-A8GM-06 3 51746876 51746876 G A GRM2 Missense_Mutation p.A280T 0.21 tolerated(0.44) benign(0.17) TCGA-D3-A8GM-06 3 52185106 52185106 G A POC1A Missense_Mutation p.S10L 0.30 tolerated(0.06) benign(0.031) TCGA-D3-A8GM-06 3 52256875 52256875 G A TLR9 Missense_Mutation p.T640I 0.37 tolerated(0.39) benign(0.36) TCGA-D3-A8GM-06 3 52360171 52360171 T C DNAH1 Missense_Mutation p.V141A 0.33 benign(0) TCGA-D3-A8GM-06 3 52425475 52425475 G A DNAH1 Missense_Mutation p.G3303E 0.48 probably_damaging(0.986) TCGA-D3-A8GM-06 3 52437628 52437628 G A BAP1 Silent p.I511I 0.29 TCGA-D3-A8GM-06 3 52469931 52469931 C T SEMA3G Silent p.L679L 0.29 TCGA-D3-A8GM-06 3 5252806 5252806 T C EDEM1 Missense_Mutation p.C529R 0.19 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 3 52542340 52542340 G A STAB1 Missense_Mutation p.G734R 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 52812519 52812519 C T ITIH1 Missense_Mutation p.A101V 0.23 deleterious(0) possibly_damaging(0.734) TCGA-D3-A8GM-06 3 52830551 52830551 C G ITIH3 Missense_Mutation p.R57G 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 52954610 52954610 G A SFMBT1 Missense_Mutation p.P439S 0.35 deleterious(0.01) benign(0.109) TCGA-D3-A8GM-06 3 53381598 53381598 G A DCP1A 5'UTR 0.53 TCGA-D3-A8GM-06 3 53694179 53694179 G A CACNA1D Missense_Mutation p.E215K 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GM-06 3 53756477 53756477 C T CACNA1D Missense_Mutation p.P568S 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GM-06 3 54905622 54905622 G A CACNA2D3 Silent p.E561E 0.31 TCGA-D3-A8GM-06 3 54959217 54959217 C T LRTM1 Silent p.V11V 0.42 TCGA-D3-A8GM-06 3 56052961 56052961 A G ERC2 Silent p.D580D 0.29 TCGA-D3-A8GM-06 3 57107669 57107669 G A SPATA12 5'UTR 0.50 TCGA-D3-A8GM-06 3 57107670 57107670 G A SPATA12 5'UTR 0.50 TCGA-D3-A8GM-06 3 57107671 57107671 C A SPATA12 5'UTR 0.50 TCGA-D3-A8GM-06 3 57140007 57140007 G A IL17RD Nonsense_Mutation p.Q209* 0.41 TCGA-D3-A8GM-06 3 57647262 57647262 C T DENND6A Missense_Mutation p.S177N 0.11 deleterious(0) benign(0.298) TCGA-D3-A8GM-06 3 58109062 58109062 C T FLNB Silent p.F1123F 0.33 TCGA-D3-A8GM-06 3 58116478 58116478 C T FLNB Silent p.F1411F 0.28 TCGA-D3-A8GM-06 3 58118532 58118532 C T FLNB Intron 0.24 TCGA-D3-A8GM-06 3 58622930 58622930 G A FAM3D Silent p.F132F 0.19 TCGA-D3-A8GM-06 3 59997122 59997122 C T FHIT Missense_Mutation p.G85D 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 62451123 62451123 G A CADPS Silent p.F1185F 0.32 TCGA-D3-A8GM-06 3 62636743 62636743 G A CADPS Missense_Mutation p.P328S 0.20 deleterious(0) possibly_damaging(0.641) TCGA-D3-A8GM-06 3 64004712 64004712 A G PSMD6 Silent p.L167L 0.31 TCGA-D3-A8GM-06 3 64132798 64132798 G A PRICKLE2 Silent p.A456A 0.33 TCGA-D3-A8GM-06 3 64608191 64608191 G A ADAMTS9 Missense_Mutation p.R821C 0.29 deleterious(0.01) possibly_damaging(0.849) TCGA-D3-A8GM-06 3 64641303 64641303 G A ADAMTS9 Missense_Mutation p.S373L 0.26 tolerated(0.06) benign(0.015) TCGA-D3-A8GM-06 3 65372846 65372846 G A MAGI1 Intron 0.22 TCGA-D3-A8GM-06 3 65415816 65415816 C A MAGI1 Splice_Site p.X516_splice 0.28 TCGA-D3-A8GM-06 3 69168805 69168805 G T LMOD3 Missense_Mutation p.P234H 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 69985867 69985867 C T MITF Intron 0.30 TCGA-D3-A8GM-06 3 74334637 74334637 C T CNTN3 Silent p.R841R 0.34 TCGA-D3-A8GM-06 3 7456715 7456715 G A GRM7 Missense_Mutation p.D347N 0.40 tolerated(0.09) probably_damaging(0.997) TCGA-D3-A8GM-06 3 7494401 7494401 G A GRM7 Missense_Mutation p.D428N 0.36 tolerated(0.14) possibly_damaging(0.52) TCGA-D3-A8GM-06 3 7721813 7721813 G A GRM7 Silent p.P843P 0.27 TCGA-D3-A8GM-06 3 77526593 77526593 C T ROBO2 Silent p.P155P 0.27 TCGA-D3-A8GM-06 3 77526693 77526693 C T ROBO2 Nonsense_Mutation p.R189* 0.33 TCGA-D3-A8GM-06 3 85775660 85775660 C T CADM2 Missense_Mutation p.S10F 0.31 tolerated(0.56) benign(0.034) TCGA-D3-A8GM-06 3 88040801 88040801 C T HTR1F Missense_Mutation p.A301V 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 3 89259078 89259078 G A EPHA3 Missense_Mutation p.M74I 0.22 deleterious(0.02) possibly_damaging(0.882) TCGA-D3-A8GM-06 3 89391186 89391186 C T EPHA3 Silent p.L418L 0.40 TCGA-D3-A8GM-06 3 8977639 8977639 C T RAD18 Missense_Mutation p.G269R 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 3 9036194 9036194 G A SRGAP3 Silent p.I747I 0.31 TCGA-D3-A8GM-06 3 9055038 9055038 C T SRGAP3 Missense_Mutation p.E701K 0.19 tolerated(0.16) benign(0.074) TCGA-D3-A8GM-06 3 93605261 93605261 A - PROS1 Frame_Shift_Del p.F414Lfs*33 0.10 TCGA-D3-A8GM-06 3 9512408 9512408 A G SETD5 Missense_Mutation p.D997G 0.15 tolerated(0.26) probably_damaging(0.998) TCGA-D3-A8GM-06 3 96963038 96963038 T C EPHA6 Missense_Mutation p.Y505H 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 3 97194193 97194193 C T EPHA6 Intron 0.36 TCGA-D3-A8GM-06 3 97202789 97202789 G A EPHA6 Missense_Mutation p.G696R 0.30 deleterious(0.02) benign(0.094) TCGA-D3-A8GM-06 3 97605553 97605553 C T CRYBG3 Missense_Mutation p.P463S 0.39 tolerated(0.54) benign(0.446) TCGA-D3-A8GM-06 3 97983299 97983299 G A OR5H6 Silent p.G57G 0.31 TCGA-D3-A8GM-06 3 9821932 9821932 C T TADA3 3'UTR 0.25 TCGA-D3-A8GM-06 3 9833000 9833000 C T TADA3 Missense_Mutation p.E51K 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 3 99513100 99513100 G A COL8A1 Missense_Mutation p.E119K 0.45 deleterious(0.03) unknown(0) TCGA-D3-A8GM-06 3 99513664 99513664 C T COL8A1 Nonsense_Mutation p.Q307* 0.25 TCGA-D3-A8GM-06 3 99568687 99568687 A G FILIP1L Silent p.S611S 0.32 TCGA-D3-A8GM-06 3 9969905 9969905 G A IL17RC Splice_Site p.X364_splice 0.05 TCGA-D3-A8GM-06 3 99879285 99879285 T - CMSS1 Frame_Shift_Del p.L57* 0.50 TCGA-D3-A8GM-06 3 9991256 9991256 G A PRRT3 Missense_Mutation p.P182S 0.32 tolerated_low_confidence(0.08) benign(0.038) TCGA-D3-A8GM-06 4 100137332 100137332 C T ADH6 Missense_Mutation p.E36K 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 100264077 100264077 C T ADH1C Missense_Mutation p.E235K 0.13 possibly_damaging(0.464) TCGA-D3-A8GM-06 4 100789369 100789369 C T DAPP1 3'UTR 0.48 TCGA-D3-A8GM-06 4 1017440 1017440 C T FGFRL1 Missense_Mutation p.P122S 0.70 tolerated(0.58) benign(0.002) TCGA-D3-A8GM-06 4 104070023 104070023 G A CENPE Missense_Mutation p.S1274F 0.25 benign(0.38) TCGA-D3-A8GM-06 4 10448052 10448052 G A ZNF518B 5'UTR 0.17 TCGA-D3-A8GM-06 4 104512821 104512821 A C TACR3 Missense_Mutation p.I303S 0.19 deleterious(0.04) benign(0.175) TCGA-D3-A8GM-06 4 106603957 106603957 T G INTS12 Missense_Mutation p.Q441P 0.18 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D3-A8GM-06 4 1066864 1066864 G T RNF212 Missense_Mutation p.P231H 0.20 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-D3-A8GM-06 4 107845257 107845257 C T DKK2 Missense_Mutation p.E212K 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A8GM-06 4 109002804 109002804 G A LEF1 Silent p.P220P 0.64 TCGA-D3-A8GM-06 4 109571743 109571743 G A OSTC 5'Flank 0.41 TCGA-D3-A8GM-06 4 109746376 109746376 C A COL25A1 Silent p.G589G 0.17 TCGA-D3-A8GM-06 4 109839362 109839362 C T COL25A1 Missense_Mutation p.G249E 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 109839363 109839363 C T COL25A1 Missense_Mutation p.G249R 0.18 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 4 110605609 110605609 G A CCDC109B Missense_Mutation p.G208E 0.16 tolerated(0.75) benign(0.003) TCGA-D3-A8GM-06 4 110662230 110662230 T C CFI Missense_Mutation p.D524G 0.46 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 4 110866283 110866283 G A EGF Nonsense_Mutation p.W264* 0.36 TCGA-D3-A8GM-06 4 110901262 110901270 TCACTGGTT - EGF In_Frame_Del p.S730_V732del 0.18 TCGA-D3-A8GM-06 4 111409822 111409822 C T ENPEP Missense_Mutation p.S257L 0.44 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 4 111470940 111470940 G A ENPEP Nonsense_Mutation p.W800* 0.43 TCGA-D3-A8GM-06 4 114458571 114458571 G A CAMK2D Missense_Mutation p.S148F 0.13 deleterious_low_confidence(0.02) benign(0.195) TCGA-D3-A8GM-06 4 114823494 114823494 T - ARSJ Frame_Shift_Del p.K579Rfs*30 0.33 TCGA-D3-A8GM-06 4 115597184 115597184 G A UGT8 Missense_Mutation p.G456R 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 115792072 115792072 C T NDST4 Missense_Mutation p.G524E 0.08 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 4 119951685 119951685 G A SYNPO2 Missense_Mutation p.M585I 0.20 tolerated(0.41) benign(0.003) TCGA-D3-A8GM-06 4 119979176 119979176 G A SYNPO2 3'UTR 0.44 TCGA-D3-A8GM-06 4 120107311 120107311 G A MYOZ2 Missense_Mutation p.E251K 0.19 tolerated(0.86) unknown(0) TCGA-D3-A8GM-06 4 121957355 121957355 T A NDNF 3'UTR 0.33 TCGA-D3-A8GM-06 4 121957957 121957957 C T NDNF Missense_Mutation p.R390K 0.39 tolerated(0.54) benign(0.017) TCGA-D3-A8GM-06 4 122607464 122607464 G A ANXA5 Missense_Mutation p.R25W 0.42 deleterious(0) probably_damaging(0.929) TCGA-D3-A8GM-06 4 122768568 122768568 G A BBS7 Missense_Mutation p.S343F 0.33 tolerated(0.07) benign(0.004) TCGA-D3-A8GM-06 4 123271162 123271162 G T KIAA1109 Missense_Mutation p.W4594C 0.39 probably_damaging(0.998) TCGA-D3-A8GM-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.19 probably_damaging(0.999) TCGA-D3-A8GM-06 4 123305097 123305097 G A ADAD1 Missense_Mutation p.E169K 0.46 tolerated(0.57) benign(0.101) TCGA-D3-A8GM-06 4 123542020 123542020 C T IL21 Silent p.L49L 0.33 TCGA-D3-A8GM-06 4 123665214 123665214 C T BBS12 3'UTR 0.56 TCGA-D3-A8GM-06 4 123856918 123856918 A G SPATA5 Silent p.G399G 0.05 TCGA-D3-A8GM-06 4 123856928 123856928 A T SPATA5 Missense_Mutation p.I403F 0.05 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GM-06 4 125592250 125592250 C T ANKRD50 Missense_Mutation p.A728T 0.14 tolerated(0.31) benign(0.094) TCGA-D3-A8GM-06 4 126239892 126239892 C T FAT4 Nonsense_Mutation p.Q776* 0.39 TCGA-D3-A8GM-06 4 126371415 126371415 G A FAT4 Missense_Mutation p.E3082K 0.38 probably_damaging(0.93) TCGA-D3-A8GM-06 4 126371692 126371692 G A FAT4 Missense_Mutation p.R3174K 0.15 benign(0.028) TCGA-D3-A8GM-06 4 126411229 126411229 C T FAT4 Nonsense_Mutation p.Q4418* 0.20 TCGA-D3-A8GM-06 4 126411272 126411272 C T FAT4 Missense_Mutation p.S4432F 0.14 probably_damaging(0.996) TCGA-D3-A8GM-06 4 126412148 126412148 C T FAT4 Missense_Mutation p.P4724L 0.56 benign(0.039) TCGA-D3-A8GM-06 4 129783320 129783320 G A JADE1 Silent p.E481E 0.47 TCGA-D3-A8GM-06 4 1332983 1332983 C T MAEA 3'UTR 0.22 TCGA-D3-A8GM-06 4 13578577 13578577 A - BOD1L1 Frame_Shift_Del p.S2975Lfs*72 0.15 TCGA-D3-A8GM-06 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.10 deleterious(0.02) possibly_damaging(0.861) TCGA-D3-A8GM-06 4 139980348 139980348 C T ELF2 Missense_Mutation p.R512Q 0.47 tolerated(0.23) probably_damaging(0.976) TCGA-D3-A8GM-06 4 140270623 140270623 T C NAA15 Silent p.L233L 0.46 TCGA-D3-A8GM-06 4 141560486 141560486 C T TBC1D9 Missense_Mutation p.V812M 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 4 143159099 143159099 G A INPP4B Nonsense_Mutation p.R252* 0.52 TCGA-D3-A8GM-06 4 143352356 143352356 G A INPP4B Silent p.A19A 0.20 TCGA-D3-A8GM-06 4 144135976 144135976 G T USP38 Missense_Mutation p.Q949H 0.18 deleterious(0.02) benign(0.013) TCGA-D3-A8GM-06 4 146044718 146044718 G A ABCE1 Missense_Mutation p.D536N 0.15 tolerated(0.05) benign(0.097) TCGA-D3-A8GM-06 4 146686775 146686775 G A ZNF827 Silent p.G992G 0.16 TCGA-D3-A8GM-06 4 148453850 148453850 C T EDNRA Silent p.F247F 0.21 TCGA-D3-A8GM-06 4 148555437 148555437 T C TMEM184C Missense_Mutation p.M390T 0.35 tolerated(0.36) benign(0.002) TCGA-D3-A8GM-06 4 148861025 148861025 C T ARHGAP10 Silent p.V426V 0.14 TCGA-D3-A8GM-06 4 152609838 152609838 C A PET112 Missense_Mutation p.W425C 0.40 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 4 152609839 152609839 C T PET112 Nonsense_Mutation p.W425* 0.39 TCGA-D3-A8GM-06 4 154626063 154626063 C T TLR2 Silent p.P668P 0.34 TCGA-D3-A8GM-06 4 154707049 154707049 C T SFRP2 Missense_Mutation p.D184N 0.28 deleterious(0.01) benign(0.118) TCGA-D3-A8GM-06 4 155457896 155457896 T C PLRG1 Missense_Mutation p.T496A 0.09 deleterious(0) benign(0.004) TCGA-D3-A8GM-06 4 155505343 155505343 G A FGA Missense_Mutation p.S845F 0.21 deleterious(0.02) benign(0.134) TCGA-D3-A8GM-06 4 155506992 155506992 G A FGA Missense_Mutation p.P530L 0.22 tolerated(0.15) benign(0.023) TCGA-D3-A8GM-06 4 156289945 156289945 G A MAP9 Silent p.D167D 0.37 TCGA-D3-A8GM-06 4 156698770 156698770 C T GUCY1B3 Silent p.G91G 0.18 TCGA-D3-A8GM-06 4 156760021 156760021 C T ASIC5 Missense_Mutation p.G337E 0.44 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GM-06 4 157999217 157999217 C T GLRB Missense_Mutation p.S14F 0.15 tolerated_low_confidence(0.08) benign(0.136) TCGA-D3-A8GM-06 4 158224882 158224882 C T GRIA2 Silent p.L136L 0.38 TCGA-D3-A8GM-06 4 158224907 158224907 T C GRIA2 Missense_Mutation p.W145R 0.13 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 4 158284179 158284179 G A GRIA2 Missense_Mutation p.E879K 0.22 deleterious_low_confidence(0.01) benign(0.288) TCGA-D3-A8GM-06 4 159443126 159443126 G A RXFP1 5'UTR 0.16 TCGA-D3-A8GM-06 4 159894378 159894378 A G C4orf45 Silent p.T50T 0.12 TCGA-D3-A8GM-06 4 160271311 160271311 A - RAPGEF2 Frame_Shift_Del p.I1087Ffs*98 0.19 TCGA-D3-A8GM-06 4 160275072 160275072 G A RAPGEF2 Missense_Mutation p.G1348S 0.43 tolerated_low_confidence(0.33) benign(0.024) TCGA-D3-A8GM-06 4 164247521 164247521 G A NPY1R Silent p.I62I 0.11 TCGA-D3-A8GM-06 4 164272690 164272690 C T NPY5R Missense_Mutation p.P422L 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 164393562 164393562 C T TKTL2 Missense_Mutation p.R442Q 0.16 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 4 164394112 164394112 C T TKTL2 Missense_Mutation p.E259K 0.21 deleterious(0.02) benign(0.224) TCGA-D3-A8GM-06 4 16513613 16513613 C T LDB2 Missense_Mutation p.A244T 0.40 tolerated(0.28) benign(0.176) TCGA-D3-A8GM-06 4 16513614 16513614 C T LDB2 Silent p.V243V 0.40 TCGA-D3-A8GM-06 4 165890698 165890698 C T TRIM61 Missense_Mutation p.E153K 0.17 tolerated(1) benign(0.017) TCGA-D3-A8GM-06 4 166235238 166235238 G A KLHL2 Missense_Mutation p.R514Q 0.16 tolerated(0.16) possibly_damaging(0.476) TCGA-D3-A8GM-06 4 166388898 166388898 A G CPE Missense_Mutation p.N188S 0.37 deleterious(0) benign(0.41) TCGA-D3-A8GM-06 4 166405585 166405585 G A CPE Missense_Mutation p.E268K 0.25 tolerated(0.22) probably_damaging(0.956) TCGA-D3-A8GM-06 4 166910622 166910622 G A TLL1 Missense_Mutation p.G87R 0.44 tolerated(0.33) benign(0.002) TCGA-D3-A8GM-06 4 169138049 169138049 G A DDX60 3'UTR 0.14 TCGA-D3-A8GM-06 4 169279148 169279148 C T DDX60L 3'UTR 0.36 TCGA-D3-A8GM-06 4 169279357 169279357 T - DDX60L Frame_Shift_Del p.T1688Pfs*13 0.26 TCGA-D3-A8GM-06 4 169343733 169343733 C T DDX60L Missense_Mutation p.R729K 0.14 deleterious(0.01) possibly_damaging(0.896) TCGA-D3-A8GM-06 4 169433274 169433274 C T PALLD Missense_Mutation p.P207S 0.15 tolerated(0.07) probably_damaging(0.983) TCGA-D3-A8GM-06 4 169911323 169911323 C T CBR4 Missense_Mutation p.G231E 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 4 170618471 170618471 A T CLCN3 Silent p.T383T 0.11 TCGA-D3-A8GM-06 4 170994349 170994349 G A AADAT Missense_Mutation p.P198S 0.14 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 4 175223277 175223277 G A CEP44 Missense_Mutation p.M59I 0.37 tolerated(0.13) benign(0.104) TCGA-D3-A8GM-06 4 175636722 175636722 C T GLRA3 Splice_Site p.X164_splice 0.14 TCGA-D3-A8GM-06 4 175649755 175649755 G A GLRA3 Missense_Mutation p.S121F 0.12 deleterious(0) possibly_damaging(0.547) TCGA-D3-A8GM-06 4 177136782 177136782 G A ASB5 Missense_Mutation p.T320M 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-D3-A8GM-06 4 177142381 177142381 G A ASB5 Missense_Mutation p.P199S 0.53 tolerated(0.35) probably_damaging(0.993) TCGA-D3-A8GM-06 4 177608423 177608423 G A VEGFC Missense_Mutation p.P355S 0.39 deleterious(0.04) benign(0.094) TCGA-D3-A8GM-06 4 177609008 177609008 C T VEGFC Missense_Mutation p.E260K 0.22 tolerated(0.58) benign(0.03) TCGA-D3-A8GM-06 4 183714342 183714342 C T TENM3 Missense_Mutation p.L2173F 0.15 deleterious(0) possibly_damaging(0.86) TCGA-D3-A8GM-06 4 183721106 183721106 C T TENM3 Missense_Mutation p.R2568C 0.36 deleterious(0.01) possibly_damaging(0.876) TCGA-D3-A8GM-06 4 183721183 183721183 C T TENM3 Silent p.F2593F 0.44 TCGA-D3-A8GM-06 4 183959334 183959334 C T FAM92A1P2 RNA 0.46 TCGA-D3-A8GM-06 4 185646185 185646185 A G CENPU Silent p.A82A 0.16 TCGA-D3-A8GM-06 4 187172759 187172760 - T KLKB1 Frame_Shift_Ins p.T332Hfs*10 0.08 TCGA-D3-A8GM-06 4 187192881 187192881 C T F11 Silent p.L58L 0.37 TCGA-D3-A8GM-06 4 187208934 187208934 T A F11 Missense_Mutation p.M558K 0.13 deleterious(0) possibly_damaging(0.645) TCGA-D3-A8GM-06 4 187542619 187542619 A G FAT1 Silent p.G1707G 0.35 TCGA-D3-A8GM-06 4 187629749 187629749 G A FAT1 Silent p.F411F 0.18 TCGA-D3-A8GM-06 4 189012499 189012499 C T TRIML2 3'UTR 0.45 TCGA-D3-A8GM-06 4 189020158 189020158 G A TRIML2 Intron 0.15 TCGA-D3-A8GM-06 4 189060897 189060897 G A TRIML1 Missense_Mutation p.G62D 0.20 tolerated(0.3) benign(0.001) TCGA-D3-A8GM-06 4 1919884 1919884 C T WHSC1 Missense_Mutation p.S315L 0.24 deleterious(0) benign(0.15) TCGA-D3-A8GM-06 4 1944175 1944175 A G WHSC1 Intron 0.17 TCGA-D3-A8GM-06 4 20555581 20555581 T A SLIT2 Missense_Mutation p.F905L 0.18 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 4 20597399 20597399 G A SLIT2 Missense_Mutation p.G1088R 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 2210011 2210011 G A POLN Silent p.F139F 0.44 TCGA-D3-A8GM-06 4 2214786 2214786 T C POLN Silent p.S67S 0.18 TCGA-D3-A8GM-06 4 25351119 25351119 C T ZCCHC4 Silent p.A255A 0.30 TCGA-D3-A8GM-06 4 25351120 25351120 C T ZCCHC4 Missense_Mutation p.L256F 0.30 tolerated(0.73) probably_damaging(0.961) TCGA-D3-A8GM-06 4 25418154 25418154 C T ANAPC4 Missense_Mutation p.P670L 0.44 deleterious(0) possibly_damaging(0.848) TCGA-D3-A8GM-06 4 25760621 25760621 C T SEL1L3 Missense_Mutation p.E1009K 0.44 tolerated(0.18) possibly_damaging(0.541) TCGA-D3-A8GM-06 4 264786 264786 G A ZNF732 3'UTR 0.21 TCGA-D3-A8GM-06 4 265485 265485 C T ZNF732 Silent p.E387E 0.27 TCGA-D3-A8GM-06 4 27009289 27009289 C T STIM2 Silent p.N372N 0.28 TCGA-D3-A8GM-06 4 2746609 2746610 - C TNIP2 Frame_Shift_Ins p.L241Afs*34 0.35 TCGA-D3-A8GM-06 4 3213719 3213719 C T HTT Nonsense_Mutation p.Q2160* 0.19 TCGA-D3-A8GM-06 4 3449225 3449225 C T HGFAC Silent p.P454P 0.45 TCGA-D3-A8GM-06 4 36126590 36126590 C T ARAP2 Splice_Site p.X1214_splice 0.37 TCGA-D3-A8GM-06 4 36230789 36230789 G A ARAP2 Missense_Mutation p.S107F 0.14 deleterious_low_confidence(0) benign(0.234) TCGA-D3-A8GM-06 4 37962083 37962083 G A PTTG2 Missense_Mutation p.E10K 0.26 deleterious(0) probably_damaging(0.944) TCGA-D3-A8GM-06 4 38690362 38690362 C T KLF3 Missense_Mutation p.P72S 0.18 tolerated(0.66) probably_damaging(0.992) TCGA-D3-A8GM-06 4 38800352 38800352 T G TLR1 Missense_Mutation p.N34T 0.18 tolerated(0.64) benign(0) TCGA-D3-A8GM-06 4 39184051 39184051 C T WDR19 5'UTR 0.33 TCGA-D3-A8GM-06 4 39482223 39482223 C T LIAS 3'Flank 0.20 TCGA-D3-A8GM-06 4 39483107 39483107 G A LIAS 3'Flank 0.23 TCGA-D3-A8GM-06 4 40119486 40119486 C T N4BP2 Intron 0.15 TCGA-D3-A8GM-06 4 40356117 40356117 C T CHRNA9 Silent p.V340V 0.41 TCGA-D3-A8GM-06 4 40892442 40892442 C T APBB2 Missense_Mutation p.V490M 0.44 deleterious(0.01) benign(0.271) TCGA-D3-A8GM-06 4 41265272 41265272 C T UCHL1 Silent p.L164L 0.40 TCGA-D3-A8GM-06 4 41607973 41607973 G A LIMCH1 Silent p.T146T 0.35 TCGA-D3-A8GM-06 4 41750665 41750665 G A PHOX2B 5'UTR 0.24 TCGA-D3-A8GM-06 4 4198967 4198967 G A OTOP1 Missense_Mutation p.R532C 0.42 tolerated(0.19) benign(0.011) TCGA-D3-A8GM-06 4 42122161 42122161 C T BEND4 Missense_Mutation p.G433S 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GM-06 4 42127653 42127653 G A BEND4 Silent p.L365L 0.21 TCGA-D3-A8GM-06 4 4285466 4285466 C A LYAR Missense_Mutation p.V2L 0.38 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GM-06 4 42895338 42895338 C T GRXCR1 Missense_Mutation p.R19W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 4 4303929 4303929 A G ZBTB49 Silent p.V122V 0.15 TCGA-D3-A8GM-06 4 436988 436988 C T ZNF721 Missense_Mutation p.G423D 0.15 deleterious(0.02) benign(0.105) TCGA-D3-A8GM-06 4 46060338 46060338 C T GABRG1 Missense_Mutation p.G271E 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 4 46307660 46307660 G A GABRA2 Missense_Mutation p.P210S 0.38 tolerated(0.12) benign(0.003) TCGA-D3-A8GM-06 4 47850244 47850244 A T NFXL1 Missense_Mutation p.L891H 0.32 deleterious(0) possibly_damaging(0.548) TCGA-D3-A8GM-06 4 47877236 47877236 A T NFXL1 Silent p.I718I 0.42 TCGA-D3-A8GM-06 4 47953434 47953434 C T CNGA1 Missense_Mutation p.E127K 0.14 tolerated_low_confidence(0.35) benign(0.01) TCGA-D3-A8GM-06 4 48114411 48114411 G A TXK Missense_Mutation p.P98L 0.34 tolerated(0.06) benign(0.2) TCGA-D3-A8GM-06 4 48993951 48993951 A T CWH43 Splice_Site p.X119_splice 0.16 TCGA-D3-A8GM-06 4 48996692 48996692 G A CWH43 Missense_Mutation p.A190T 0.10 tolerated(0.11) benign(0.005) TCGA-D3-A8GM-06 4 49009259 49009259 C T CWH43 Missense_Mutation p.P368S 0.19 tolerated(0.31) benign(0.014) TCGA-D3-A8GM-06 4 49032865 49032865 G A CWH43 Missense_Mutation p.E466K 0.47 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GM-06 4 524284 524284 C T PIGG Missense_Mutation p.T774I 0.45 tolerated(0.19) benign(0.259) TCGA-D3-A8GM-06 4 53492251 53492251 G A USP46 Silent p.L165L 0.24 TCGA-D3-A8GM-06 4 54179910 54179910 A G SCFD2 Missense_Mutation p.L343P 0.38 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GM-06 4 55131147 55131147 G A PDGFRA Silent p.T230T 0.42 TCGA-D3-A8GM-06 4 55593610 55593610 T C KIT Missense_Mutation p.V559A 0.39 deleterious(0) probably_damaging(0.912) TCGA-D3-A8GM-06 4 55958879 55958879 G A KDR Missense_Mutation p.P992S 0.44 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 4 6086681 6086681 C T JAKMIP1 Missense_Mutation p.M282I 0.34 tolerated(0.08) benign(0.018) TCGA-D3-A8GM-06 4 62801656 62801656 G A LPHN3 Missense_Mutation p.R703K 0.20 tolerated(0.29) probably_damaging(0.965) TCGA-D3-A8GM-06 4 69095062 69095062 G A TMPRSS11B Missense_Mutation p.R287C 0.19 tolerated(0.06) benign(0.063) TCGA-D3-A8GM-06 4 69095124 69095124 C A TMPRSS11B Missense_Mutation p.G266V 0.08 tolerated(0.6) benign(0.197) TCGA-D3-A8GM-06 4 69179981 69179981 G A YTHDC1 Missense_Mutation p.R674W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 4 69362545 69362545 G A TMPRSS11E 3'UTR 0.16 TCGA-D3-A8GM-06 4 69513067 69513067 G A UGT2B15 Missense_Mutation p.H450Y 0.10 deleterious(0) benign(0.114) TCGA-D3-A8GM-06 4 69681845 69681845 G A UGT2B10 Missense_Mutation p.M36I 0.39 tolerated(0.97) benign(0.004) TCGA-D3-A8GM-06 4 70080105 70080105 T C UGT2B11 Silent p.E112E 0.27 TCGA-D3-A8GM-06 4 70146570 70146570 G A UGT2B28 Missense_Mutation p.E118K 0.37 tolerated(0.44) benign(0.002) TCGA-D3-A8GM-06 4 70155382 70155382 G A UGT2B28 Splice_Site p.X335_splice 0.30 TCGA-D3-A8GM-06 4 70355226 70355226 C T UGT2B4 Silent p.S311S 0.38 TCGA-D3-A8GM-06 4 70455136 70455136 G A UGT2A1 Missense_Mutation p.S679F 0.19 tolerated(0.06) benign(0.008) TCGA-D3-A8GM-06 4 70460902 70460902 C T UGT2A1 Nonsense_Mutation p.W520* 0.18 TCGA-D3-A8GM-06 4 70504914 70504914 G A UGT2A2 Nonsense_Mutation p.Q149* 0.42 TCGA-D3-A8GM-06 4 70707665 70707665 G A SULT1E1 3'UTR 0.35 TCGA-D3-A8GM-06 4 71232472 71232472 C T SMR3A Missense_Mutation p.P56S 0.37 tolerated_low_confidence(0.18) unknown(0) TCGA-D3-A8GM-06 4 71232473 71232473 C T SMR3A Missense_Mutation p.P56L 0.38 tolerated_low_confidence(0.87) unknown(0) TCGA-D3-A8GM-06 4 71388495 71388495 C T AMTN Silent p.L26L 0.35 TCGA-D3-A8GM-06 4 71507856 71507856 C T ENAM Missense_Mutation p.P238L 0.22 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 4 71634377 71634377 A G RUFY3 Missense_Mutation p.Q232R 0.20 deleterious(0.01) benign(0.166) TCGA-D3-A8GM-06 4 72204940 72204940 G T SLC4A4 Intron 0.29 TCGA-D3-A8GM-06 4 72397890 72397890 A G SLC4A4 Missense_Mutation p.K760E 0.07 tolerated(0.08) probably_damaging(0.991) TCGA-D3-A8GM-06 4 72620770 72620770 C T GC Silent p.K382K 0.20 TCGA-D3-A8GM-06 4 728767 728767 C T PCGF3 Missense_Mutation p.P53S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 4 73280542 73280542 G A ADAMTS3 Silent p.F217F 0.19 TCGA-D3-A8GM-06 4 74863213 74863213 G A CXCL5 3'UTR 0.20 TCGA-D3-A8GM-06 4 75067071 75067071 G A MTHFD2L Silent p.E232E 0.43 TCGA-D3-A8GM-06 4 75178734 75178734 G A EPGN Splice_Site p.X85_splice 0.41 TCGA-D3-A8GM-06 4 76924789 76924789 G A CXCL9 Nonsense_Mutation p.R114* 0.13 TCGA-D3-A8GM-06 4 77676339 77676339 G A SHROOM3 Missense_Mutation p.R1568H 0.26 tolerated(0.63) benign(0) TCGA-D3-A8GM-06 4 78979120 78979120 G A FRAS1 5'UTR 0.38 TCGA-D3-A8GM-06 4 79205624 79205624 C T FRAS1 Missense_Mutation p.P441S 0.40 benign(0.014) TCGA-D3-A8GM-06 4 79321933 79321933 C T FRAS1 Missense_Mutation p.P1341S 0.56 benign(0.046) TCGA-D3-A8GM-06 4 79359813 79359813 G A FRAS1 Silent p.V1769V 0.33 TCGA-D3-A8GM-06 4 79387484 79387484 G A FRAS1 Silent p.R2384R 0.23 TCGA-D3-A8GM-06 4 80328781 80328781 C T GK2 Missense_Mutation p.G192R 0.33 deleterious(0.02) possibly_damaging(0.717) TCGA-D3-A8GM-06 4 80328850 80328850 C T GK2 Missense_Mutation p.E169K 0.32 tolerated(0.24) benign(0.003) TCGA-D3-A8GM-06 4 81207861 81207861 C T FGF5 3'UTR 0.44 TCGA-D3-A8GM-06 4 81207862 81207862 C T FGF5 3'UTR 0.44 TCGA-D3-A8GM-06 4 81966977 81966977 C T BMP3 Silent p.F134F 0.38 TCGA-D3-A8GM-06 4 81967228 81967228 G A BMP3 Missense_Mutation p.G218E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 4 82092853 82092853 G A PRKG2 Missense_Mutation p.S245F 0.41 deleterious(0) possibly_damaging(0.844) TCGA-D3-A8GM-06 4 83582082 83582082 C T SCD5 Intron 0.44 TCGA-D3-A8GM-06 4 84243369 84243369 C T HPSE Intron 0.36 TCGA-D3-A8GM-06 4 8589135 8589135 G A GPR78 3'UTR 0.29 TCGA-D3-A8GM-06 4 8602833 8602833 C T CPZ Intron 0.36 TCGA-D3-A8GM-06 4 8607835 8607835 C T CPZ Nonsense_Mutation p.Q277* 0.45 TCGA-D3-A8GM-06 4 88239547 88239547 G A HSD17B13 Silent p.G84G 0.24 TCGA-D3-A8GM-06 4 88534284 88534284 G A DSPP Missense_Mutation p.E316K 0.26 benign(0.001) TCGA-D3-A8GM-06 4 88723870 88723870 G A IBSP Missense_Mutation p.R57Q 0.35 deleterious(0.05) possibly_damaging(0.527) TCGA-D3-A8GM-06 4 944226 944226 A G TMEM175 Silent p.V70V 0.35 TCGA-D3-A8GM-06 4 94436492 94436492 T A GRID2 Missense_Mutation p.M708K 0.40 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 4 94750279 94750279 A G ATOH1 Missense_Mutation p.T68A 0.61 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 4 95198218 95198218 C T SMARCAD1 Silent p.L664L 0.17 TCGA-D3-A8GM-06 4 9785112 9785112 G A DRD5 3'UTR 0.16 TCGA-D3-A8GM-06 4 98480246 98480246 C T STPG2 Missense_Mutation p.G448E 0.48 tolerated_low_confidence(0.91) benign(0) TCGA-D3-A8GM-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.23 TCGA-D3-A8GM-06 5 101585406 101585406 C T SLCO4C1 Missense_Mutation p.G519E 0.38 tolerated(0.15) benign(0.279) TCGA-D3-A8GM-06 5 101834222 101834222 C T SLCO6A1 Missense_Mutation p.M109I 0.35 deleterious(0.02) possibly_damaging(0.472) TCGA-D3-A8GM-06 5 101834348 101834348 C T SLCO6A1 Silent p.R67R 0.37 TCGA-D3-A8GM-06 5 1036403 1036403 G A NKD2 Missense_Mutation p.E231K 0.29 tolerated(0.6) benign(0.228) TCGA-D3-A8GM-06 5 10423908 10423908 A G MARCH6 Missense_Mutation p.Q782R 0.13 deleterious(0.01) benign(0.002) TCGA-D3-A8GM-06 5 10464969 10464969 G A ROPN1L Silent p.R201R 0.21 TCGA-D3-A8GM-06 5 108168575 108168575 T C FER Silent p.I104I 0.09 TCGA-D3-A8GM-06 5 110097350 110097350 C T SLC25A46 Silent p.T375T 0.47 TCGA-D3-A8GM-06 5 111504733 111504733 G A EPB41L4A Silent p.S603S 0.26 TCGA-D3-A8GM-06 5 111615976 111615976 C T EPB41L4A Silent p.L83L 0.29 TCGA-D3-A8GM-06 5 112177678 112177678 G A APC Silent p.S2129S 0.26 TCGA-D3-A8GM-06 5 112227451 112227451 G A ZRSR1 Missense_Mutation p.E39K 0.28 tolerated(0.2) benign(0.292) TCGA-D3-A8GM-06 5 113798837 113798837 G A KCNN2 Missense_Mutation p.V365I 0.37 deleterious(0) possibly_damaging(0.607) TCGA-D3-A8GM-06 5 1208906 1208906 T C SLC6A19 Missense_Mutation p.I83T 0.13 deleterious(0.05) benign(0.299) TCGA-D3-A8GM-06 5 121488681 121488681 C T ZNF474 Silent p.S332S 0.33 TCGA-D3-A8GM-06 5 121786421 121786421 G A SNCAIP Missense_Mutation p.E627K 0.33 deleterious(0) benign(0.201) TCGA-D3-A8GM-06 5 1219211 1219211 A C SLC6A19 Missense_Mutation p.E456A 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 5 122930793 122930793 C T CSNK1G3 Missense_Mutation p.H383Y 0.44 tolerated(0.32) benign(0.377) TCGA-D3-A8GM-06 5 1254495 1254495 A G TERT Missense_Mutation p.S1095P 0.23 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 5 126206455 126206455 T C MARCH3 Missense_Mutation p.Y211C 0.35 deleterious(0) possibly_damaging(0.896) TCGA-D3-A8GM-06 5 126705674 126705674 G A MEGF10 Missense_Mutation p.G131E 0.27 tolerated(0.13) possibly_damaging(0.881) TCGA-D3-A8GM-06 5 127664352 127664352 C T FBN2 Intron 0.10 TCGA-D3-A8GM-06 5 127670514 127670514 A G FBN2 Silent p.N1332N 0.32 TCGA-D3-A8GM-06 5 127704993 127704993 G A FBN2 Silent p.I710I 0.32 TCGA-D3-A8GM-06 5 127863583 127863584 - A FBN2 Frame_Shift_Ins p.G172Wfs*10 0.18 TCGA-D3-A8GM-06 5 128302033 128302033 C A SLC27A6 Missense_Mutation p.P68H 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 5 128957945 128957945 G A ADAMTS19 Silent p.V552V 0.32 TCGA-D3-A8GM-06 5 129019852 129019852 G A ADAMTS19 Missense_Mutation p.E896K 0.36 tolerated(0.2) probably_damaging(1) TCGA-D3-A8GM-06 5 129019942 129019942 G A ADAMTS19 Missense_Mutation p.D926N 0.28 tolerated(0.07) benign(0.222) TCGA-D3-A8GM-06 5 129521141 129521142 - A CHSY3 Frame_Shift_Ins p.T772Dfs*18 0.30 TCGA-D3-A8GM-06 5 130846088 130846088 G A RAPGEF6 Nonsense_Mutation p.R242* 0.46 TCGA-D3-A8GM-06 5 130982886 130982886 G A FNIP1 Missense_Mutation p.L1107F 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 5 131007363 131007363 A T FNIP1 Missense_Mutation p.I925N 0.41 tolerated(0.27) benign(0.003) TCGA-D3-A8GM-06 5 133914652 133914652 C T JADE2 Missense_Mutation p.P673L 0.23 tolerated(0.33) benign(0.086) TCGA-D3-A8GM-06 5 134086644 134086644 C A CAMLG 3'UTR 0.12 TCGA-D3-A8GM-06 5 134364516 134364516 G A PITX1 Silent p.L300L 0.35 TCGA-D3-A8GM-06 5 134782185 134782185 G A C5orf20 Missense_Mutation p.S205L 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.519) TCGA-D3-A8GM-06 5 134782720 134782720 C T C5orf20 Missense_Mutation p.E27K 0.42 tolerated_low_confidence(0.43) possibly_damaging(0.486) TCGA-D3-A8GM-06 5 135282893 135282893 G A LECT2 3'UTR 0.27 TCGA-D3-A8GM-06 5 135290601 135290601 G A LECT2 5'UTR 0.31 TCGA-D3-A8GM-06 5 136476371 136476371 G A SPOCK1 Missense_Mutation p.S82F 0.20 deleterious(0) benign(0.067) TCGA-D3-A8GM-06 5 137281651 137281651 G A FAM13B Silent p.L738L 0.30 TCGA-D3-A8GM-06 5 137323267 137323267 T C FAM13B Missense_Mutation p.H310R 0.10 deleterious(0) benign(0.429) TCGA-D3-A8GM-06 5 13737440 13737440 G T DNAH5 Silent p.A3792A 0.22 TCGA-D3-A8GM-06 5 13737548 13737548 C T DNAH5 Silent p.R3756R 0.25 TCGA-D3-A8GM-06 5 13753342 13753342 C T DNAH5 Silent p.Q3624Q 0.15 TCGA-D3-A8GM-06 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.18 possibly_damaging(0.898) TCGA-D3-A8GM-06 5 13770966 13770966 C T DNAH5 Missense_Mutation p.R3166K 0.27 benign(0.22) TCGA-D3-A8GM-06 5 13792287 13792287 A G DNAH5 Missense_Mutation p.F2755S 0.28 possibly_damaging(0.637) TCGA-D3-A8GM-06 5 13793828 13793828 C T DNAH5 Missense_Mutation p.E2674K 0.25 possibly_damaging(0.621) TCGA-D3-A8GM-06 5 138119025 138119025 G A CTNNA1 Missense_Mutation p.E89K 0.38 deleterious(0.02) benign(0.303) TCGA-D3-A8GM-06 5 13814883 13814883 T C DNAH5 Missense_Mutation p.D2354G 0.15 possibly_damaging(0.822) TCGA-D3-A8GM-06 5 13814884 13814884 C A DNAH5 Missense_Mutation p.D2354Y 0.14 probably_damaging(0.961) TCGA-D3-A8GM-06 5 13814885 13814885 C T DNAH5 Silent p.L2353L 0.14 TCGA-D3-A8GM-06 5 13850846 13850846 G A DNAH5 Nonsense_Mutation p.Q1677* 0.14 TCGA-D3-A8GM-06 5 13864708 13864708 G A DNAH5 Missense_Mutation p.A1465V 0.20 possibly_damaging(0.787) TCGA-D3-A8GM-06 5 138661241 138661241 C T MATR3 Missense_Mutation p.P754L 0.42 tolerated(0.24) benign(0.007) TCGA-D3-A8GM-06 5 13870950 13870950 G A DNAH5 Missense_Mutation p.R1254W 0.31 benign(0.001) TCGA-D3-A8GM-06 5 13914049 13914049 G A DNAH5 Missense_Mutation p.H447Y 0.16 benign(0.415) TCGA-D3-A8GM-06 5 139748172 139748172 G A SLC4A9 Silent p.R809R 0.45 TCGA-D3-A8GM-06 5 139748173 139748173 G A SLC4A9 Missense_Mutation p.E810K 0.43 deleterious(0) benign(0.436) TCGA-D3-A8GM-06 5 139946884 139946884 G A SLC35A4 Missense_Mutation p.G44S 0.16 tolerated(0.09) benign(0.179) TCGA-D3-A8GM-06 5 1401102 1401102 C T SLC6A3 Splice_Site p.X590_splice 0.26 TCGA-D3-A8GM-06 5 140432107 140432107 C T PCDHB1 Missense_Mutation p.S351F 0.62 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 5 140503815 140503815 C T PCDHB4 Silent p.S745S 0.55 TCGA-D3-A8GM-06 5 140531571 140531571 C T PCDHB6 Missense_Mutation p.A578V 0.58 deleterious(0) probably_damaging(0.924) TCGA-D3-A8GM-06 5 140532154 140532154 C T PCDHB6 Silent p.F772F 0.59 TCGA-D3-A8GM-06 5 140536978 140536978 G A PCDHB17 Missense_Mutation p.A468T 0.35 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-D3-A8GM-06 5 140554772 140554772 C T PCDHB7 Missense_Mutation p.P786S 0.09 tolerated_low_confidence(0.63) benign(0.002) TCGA-D3-A8GM-06 5 140557730 140557730 G A PCDHB8 Missense_Mutation p.E39K 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 140558124 140558124 A T PCDHB8 Missense_Mutation p.N170I 0.10 deleterious_low_confidence(0) benign(0.102) TCGA-D3-A8GM-06 5 140558884 140558884 C T PCDHB8 Silent p.T423T 0.16 TCGA-D3-A8GM-06 5 140559274 140559274 G A PCDHB8 Silent p.L553L 0.09 TCGA-D3-A8GM-06 5 140595830 140595830 G A PCDHB13 Missense_Mutation p.R712Q 0.22 deleterious_low_confidence(0.02) benign(0.084) TCGA-D3-A8GM-06 5 140744136 140744136 G A PCDHGA5 Missense_Mutation p.R80Q 0.70 deleterious_low_confidence(0.04) benign(0.292) TCGA-D3-A8GM-06 5 140769296 140769296 C T PCDHGB4 Silent p.F615F 0.49 TCGA-D3-A8GM-06 5 140783056 140783056 C T PCDHGA9 Silent p.S179S 0.60 TCGA-D3-A8GM-06 5 141059754 141059754 G A ARAP3 Silent p.T100T 0.53 TCGA-D3-A8GM-06 5 143549485 143549485 T C YIPF5 Missense_Mutation p.Y12C 0.09 deleterious(0) possibly_damaging(0.514) TCGA-D3-A8GM-06 5 145379758 145379758 G A SH3RF2 Silent p.G172G 0.63 TCGA-D3-A8GM-06 5 146778786 146778786 G A DPYSL3 Silent p.F494F 0.18 TCGA-D3-A8GM-06 5 147009295 147009295 A T JAKMIP2 Silent p.P630P 0.57 TCGA-D3-A8GM-06 5 147024484 147024484 C T JAKMIP2 Missense_Mutation p.D338N 0.53 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A8GM-06 5 147207666 147207666 C A SPINK1 Missense_Mutation p.G38V 0.38 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GM-06 5 147207667 147207667 C T SPINK1 Missense_Mutation p.G38R 0.42 tolerated(0.06) probably_damaging(0.971) TCGA-D3-A8GM-06 5 1481067 1481067 C A LPCAT1 Nonsense_Mutation p.G251* 0.18 TCGA-D3-A8GM-06 5 148392294 148392294 G A SH3TC2 Silent p.S1019S 0.40 TCGA-D3-A8GM-06 5 148392295 148392295 G A SH3TC2 Missense_Mutation p.S1019F 0.40 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GM-06 5 148407456 148407456 G A SH3TC2 Silent p.L613L 0.65 TCGA-D3-A8GM-06 5 148998552 148998552 C T ARHGEF37 Silent p.L281L 0.68 TCGA-D3-A8GM-06 5 149215955 149215955 C T PPARGC1B Missense_Mutation p.A646V 0.21 tolerated(0.11) benign(0.091) TCGA-D3-A8GM-06 5 150701706 150701706 G A SLC36A2 Missense_Mutation p.P361S 0.60 deleterious(0.02) possibly_damaging(0.517) TCGA-D3-A8GM-06 5 150946303 150946303 G A FAT2 Silent p.I730I 0.66 TCGA-D3-A8GM-06 5 151239431 151239431 C T GLRA1 Missense_Mutation p.E131K 0.57 deleterious(0.02) probably_damaging(0.965) TCGA-D3-A8GM-06 5 151784682 151784682 C T NMUR2 5'UTR 0.72 TCGA-D3-A8GM-06 5 153190618 153190618 G A GRIA1 Missense_Mutation p.E862K 0.45 tolerated(0.19) benign(0.26) TCGA-D3-A8GM-06 5 154395774 154395774 G A KIF4B Silent p.K785K 0.50 TCGA-D3-A8GM-06 5 156531750 156531750 G A HAVCR2 Silent p.T135T 0.42 TCGA-D3-A8GM-06 5 156589408 156589408 C T FAM71B 3'UTR 0.58 TCGA-D3-A8GM-06 5 157182086 157182086 G A LSM11 Silent p.G299G 0.58 TCGA-D3-A8GM-06 5 159686624 159686624 G A CCNJL Silent p.P193P 0.46 TCGA-D3-A8GM-06 5 159686625 159686625 G A CCNJL Missense_Mutation p.P193L 0.46 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 5 161277822 161277822 G A GABRA1 Silent p.R2R 0.57 TCGA-D3-A8GM-06 5 167625870 167625870 C T TENM2 Silent p.I971I 0.65 TCGA-D3-A8GM-06 5 170148779 170148779 G A KCNIP1 Intron 0.60 TCGA-D3-A8GM-06 5 174868816 174868816 G A DRD1 Silent p.D429D 0.53 TCGA-D3-A8GM-06 5 174953695 174953695 C T SFXN1 Silent p.S309S 0.57 TCGA-D3-A8GM-06 5 175819735 175819735 G T CLTB 3'UTR 0.34 TCGA-D3-A8GM-06 5 175956018 175956018 G A RNF44 3'UTR 0.39 TCGA-D3-A8GM-06 5 176022596 176022596 G T CDHR2 Nonsense_Mutation p.G1286* 0.16 TCGA-D3-A8GM-06 5 176306460 176306460 G A UNC5A Silent p.R778R 0.65 TCGA-D3-A8GM-06 5 176396190 176396191 - T UIMC1 Frame_Shift_Ins p.T189Nfs*2 0.42 TCGA-D3-A8GM-06 5 178310427 178310427 C T ZNF354B Missense_Mutation p.P325L 0.49 deleterious(0.01) possibly_damaging(0.81) TCGA-D3-A8GM-06 5 178413575 178413575 C T GRM6 Silent p.G560G 0.51 TCGA-D3-A8GM-06 5 180030301 180030301 C T FLT4 Missense_Mutation p.G1328E 0.61 tolerated_low_confidence(0.05) possibly_damaging(0.603) TCGA-D3-A8GM-06 5 180650997 180650997 A G TRIM41 5'UTR 0.63 TCGA-D3-A8GM-06 5 19839089 19839089 T A CDH18 Missense_Mutation p.I3F 0.18 deleterious_low_confidence(0.02) benign(0.169) TCGA-D3-A8GM-06 5 205755 205755 C A CCDC127 Missense_Mutation p.R147M 0.09 deleterious(0.01) benign(0.133) TCGA-D3-A8GM-06 5 21751844 21751844 C A CDH12 3'UTR 0.11 TCGA-D3-A8GM-06 5 22142502 22142502 G A CDH12 Intron 0.26 TCGA-D3-A8GM-06 5 23509648 23509648 G A PRDM9 Missense_Mutation p.E47K 0.24 deleterious_low_confidence(0) benign(0.13) TCGA-D3-A8GM-06 5 23526718 23526718 G A PRDM9 Silent p.G507G 0.27 TCGA-D3-A8GM-06 5 256450 256450 T C SDHA Missense_Mutation p.V637A 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.675) TCGA-D3-A8GM-06 5 26881162 26881162 C T CDH9 3'UTR 0.24 TCGA-D3-A8GM-06 5 26881369 26881369 G A CDH9 Missense_Mutation p.S749L 0.23 deleterious(0.01) possibly_damaging(0.504) TCGA-D3-A8GM-06 5 26886162 26886162 C T CDH9 Missense_Mutation p.D515N 0.16 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 5 31267673 31267673 C T CDH6 Silent p.F31F 0.22 TCGA-D3-A8GM-06 5 31294096 31294096 G A CDH6 Missense_Mutation p.G86R 0.21 deleterious(0.02) possibly_damaging(0.827) TCGA-D3-A8GM-06 5 31294225 31294225 C T CDH6 Nonsense_Mutation p.Q129* 0.28 TCGA-D3-A8GM-06 5 31302387 31302387 G A CDH6 Silent p.G327G 0.20 TCGA-D3-A8GM-06 5 31799634 31799634 C T PDZD2 Silent p.F93F 0.22 TCGA-D3-A8GM-06 5 32230008 32230008 G A MTMR12 Missense_Mutation p.P707L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 32230009 32230009 G T MTMR12 Missense_Mutation p.P707T 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 32407012 32407012 G A ZFR Missense_Mutation p.T300I 0.38 tolerated(0.14) unknown(0) TCGA-D3-A8GM-06 5 32724832 32724832 C T NPR3 Silent p.T266T 0.12 TCGA-D3-A8GM-06 5 32789707 32789707 G A AC026703.1 Missense_Mutation p.G67E 0.20 probably_damaging(0.969) TCGA-D3-A8GM-06 5 32789893 32789893 G A NPR3 3'UTR 0.16 TCGA-D3-A8GM-06 5 34824361 34824361 C T RAI14 Missense_Mutation p.S808L 0.34 tolerated(0.32) benign(0.012) TCGA-D3-A8GM-06 5 35065949 35065949 G A PRLR Missense_Mutation p.P371S 0.19 tolerated(0.08) benign(0.062) TCGA-D3-A8GM-06 5 35649489 35649489 C T SPEF2 Silent p.F251F 0.17 TCGA-D3-A8GM-06 5 35771786 35771786 C T SPEF2 Missense_Mutation p.P1293S 0.42 tolerated(0.44) benign(0.001) TCGA-D3-A8GM-06 5 35806898 35806898 G A SPEF2 Silent p.T1700T 0.16 TCGA-D3-A8GM-06 5 35857109 35857109 G A IL7R Missense_Mutation p.M10I 0.18 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 5 35874636 35874636 G A IL7R Nonsense_Mutation p.W264* 0.21 TCGA-D3-A8GM-06 5 35876656 35876656 C T IL7R 3'UTR 0.25 TCGA-D3-A8GM-06 5 35910534 35910534 A T CAPSL Silent p.L83L 0.33 TCGA-D3-A8GM-06 5 35955670 35955670 A G UGT3A1 Intron 0.21 TCGA-D3-A8GM-06 5 36035968 36035968 C T UGT3A2 Silent p.A468A 0.22 TCGA-D3-A8GM-06 5 36039690 36039690 G A UGT3A2 Missense_Mutation p.H322Y 0.19 tolerated(0.08) benign(0.03) TCGA-D3-A8GM-06 5 36039692 36039692 G C UGT3A2 Missense_Mutation p.A321G 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A8GM-06 5 36110068 36110068 T C LMBRD2 Silent p.E590E 0.25 TCGA-D3-A8GM-06 5 36168468 36168468 C T SKP2 Missense_Mutation p.T197I 0.18 tolerated(0.39) benign(0.001) TCGA-D3-A8GM-06 5 36971105 36971105 C T NIPBL Silent p.D246D 0.27 TCGA-D3-A8GM-06 5 37337949 37337949 G A NUP155 Missense_Mutation p.P440S 0.32 deleterious(0.02) benign(0.11) TCGA-D3-A8GM-06 5 37364038 37364038 G A NUP155 Missense_Mutation p.A115V 0.09 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 5 37364377 37364377 G A NUP155 Silent p.L89L 0.22 TCGA-D3-A8GM-06 5 37381784 37381784 C T WDR70 Silent p.L58L 0.18 TCGA-D3-A8GM-06 5 38338831 38338831 C T EGFLAM Missense_Mutation p.S80F 0.28 tolerated_low_confidence(0.28) benign(0.013) TCGA-D3-A8GM-06 5 38418331 38418331 G A EGFLAM Missense_Mutation p.G553E 0.11 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 5 38463944 38463944 G A EGFLAM Silent p.K970K 0.33 TCGA-D3-A8GM-06 5 38885483 38885483 G A OSMR Missense_Mutation p.E246K 0.37 deleterious(0.01) probably_damaging(0.922) TCGA-D3-A8GM-06 5 38917665 38917665 G A OSMR Missense_Mutation p.D435N 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-D3-A8GM-06 5 39119092 39119092 G A FYB Missense_Mutation p.S772F 0.34 deleterious(0.01) benign(0.265) TCGA-D3-A8GM-06 5 39134989 39134989 C T FYB Missense_Mutation p.G558E 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 39308417 39308417 C T C9 Silent p.L385L 0.35 TCGA-D3-A8GM-06 5 39331857 39331857 C T C9 Missense_Mutation p.G179E 0.20 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 5 39331858 39331858 C T C9 Missense_Mutation p.G179R 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 39377281 39377281 T C DAB2 Silent p.Q536Q 0.32 TCGA-D3-A8GM-06 5 40950092 40950092 G A C7 Missense_Mutation p.E357K 0.23 tolerated(0.66) benign(0.008) TCGA-D3-A8GM-06 5 40959656 40959656 G A C7 Missense_Mutation p.G532E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 5 40972520 40972520 T C C7 Missense_Mutation p.L633P 0.22 tolerated(0.19) benign(0.191) TCGA-D3-A8GM-06 5 40981679 40981679 C T C7 3'UTR 0.37 TCGA-D3-A8GM-06 5 40999866 40999866 C T MROH2B Missense_Mutation p.E1500K 0.17 deleterious(0.01) possibly_damaging(0.908) TCGA-D3-A8GM-06 5 41000358 41000358 C A MROH2B Missense_Mutation p.R1482S 0.06 deleterious(0.02) benign(0.088) TCGA-D3-A8GM-06 5 41142776 41142776 G A C6 3'UTR 0.30 TCGA-D3-A8GM-06 5 41160436 41160436 G A C6 Missense_Mutation p.P498S 0.23 deleterious(0.04) possibly_damaging(0.764) TCGA-D3-A8GM-06 5 41161844 41161844 G A C6 Missense_Mutation p.S470F 0.19 deleterious(0.01) possibly_damaging(0.701) TCGA-D3-A8GM-06 5 41195924 41195924 G A C6 Missense_Mutation p.P186L 0.34 tolerated(0.09) possibly_damaging(0.802) TCGA-D3-A8GM-06 5 41382494 41382494 C T PLCXD3 Missense_Mutation p.M82I 0.18 tolerated(0.19) benign(0.005) TCGA-D3-A8GM-06 5 43246135 43246135 C T NIM1K Silent p.S86S 0.51 TCGA-D3-A8GM-06 5 43294921 43294921 C T HMGCS1 Silent p.E316E 0.35 TCGA-D3-A8GM-06 5 43645570 43645570 C T NNT Missense_Mutation p.P468S 0.26 deleterious(0.03) benign(0.168) TCGA-D3-A8GM-06 5 454131 454131 G A EXOC3 Silent p.V337V 0.22 TCGA-D3-A8GM-06 5 45645701 45645701 C T HCN1 Nonsense_Mutation p.W145* 0.31 TCGA-D3-A8GM-06 5 50073951 50073951 T C PARP8 Silent p.V189V 0.37 TCGA-D3-A8GM-06 5 52206085 52206085 G A ITGA1 Missense_Mutation p.E565K 0.33 deleterious(0) possibly_damaging(0.611) TCGA-D3-A8GM-06 5 52214715 52214715 G A ITGA1 Silent p.T714T 0.37 TCGA-D3-A8GM-06 5 53815022 53815022 C - SNX18 Frame_Shift_Del p.A416Pfs*42 0.26 TCGA-D3-A8GM-06 5 54274993 54274993 T C ESM1 3'UTR 0.44 TCGA-D3-A8GM-06 5 54275161 54275161 C T ESM1 Silent p.%3D 0.29 TCGA-D3-A8GM-06 5 54424445 54424445 T C CDC20B Missense_Mutation p.Y233C 0.27 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 5 54618199 54618200 - A SKIV2L2 Frame_Shift_Ins p.N62Kfs*2 0.13 TCGA-D3-A8GM-06 5 5463392 5463392 T C KIAA0947 Silent p.A1315A 0.10 TCGA-D3-A8GM-06 5 54639197 54639197 C T SKIV2L2 Missense_Mutation p.P274S 0.44 deleterious(0.01) probably_damaging(0.913) TCGA-D3-A8GM-06 5 55081639 55081639 C T DDX4 Silent p.F268F 0.26 TCGA-D3-A8GM-06 5 55083722 55083722 A G DDX4 Missense_Mutation p.T356A 0.23 tolerated(0.44) probably_damaging(0.999) TCGA-D3-A8GM-06 5 55236818 55236818 T C IL6ST 3'UTR 0.34 TCGA-D3-A8GM-06 5 56189427 56189427 C T MAP3K1 Missense_Mutation p.R1487C 0.47 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 5 58571232 58571233 - A PDE4D Intron 0.15 TCGA-D3-A8GM-06 5 60188504 60188504 G A ERCC8 Intron 0.56 TCGA-D3-A8GM-06 5 63905053 63905053 G A RGS7BP Missense_Mutation p.G250R 0.54 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 5 64082414 64082414 C T CWC27 Missense_Mutation p.P187S 0.34 tolerated(0.5) benign(0.002) TCGA-D3-A8GM-06 5 64447746 64447746 A C ADAMTS6 Missense_Mutation p.Y1091D 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 5 64766955 64766955 A G ADAMTS6 Missense_Mutation p.Y38H 0.42 tolerated(0.41) benign(0.308) TCGA-D3-A8GM-06 5 64867924 64867925 - A PPWD1 Frame_Shift_Ins p.N262Kfs*7 0.23 TCGA-D3-A8GM-06 5 6604272 6604272 A G NSUN2 Missense_Mutation p.Y646H 0.10 tolerated(0.46) benign(0.001) TCGA-D3-A8GM-06 5 66398380 66398380 G A MAST4 Missense_Mutation p.A363T 0.44 benign(0.067) TCGA-D3-A8GM-06 5 66479790 66479790 A G CD180 Missense_Mutation p.F294S 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 5 6656243 6656243 C T SRD5A1 Silent p.I171I 0.29 TCGA-D3-A8GM-06 5 68875685 68875685 C T GTF2H2C Missense_Mutation p.R251C 0.30 deleterious(0) benign(0.036) TCGA-D3-A8GM-06 5 72171523 72171523 C T TNPO1 Nonsense_Mutation p.R254* 0.50 TCGA-D3-A8GM-06 5 72302348 72302348 T C FCHO2 Missense_Mutation p.F191S 0.43 deleterious(0) benign(0.295) TCGA-D3-A8GM-06 5 72798325 72798325 A T BTF3 Nonsense_Mutation p.R72* 0.43 TCGA-D3-A8GM-06 5 72851371 72851371 G A ANKRA2 Missense_Mutation p.P185L 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 5 74325491 74325491 G A GCNT4 Silent p.V124V 0.28 TCGA-D3-A8GM-06 5 74640090 74640090 A G HMGCR Missense_Mutation p.I100V 0.27 tolerated(1) benign(0.047) TCGA-D3-A8GM-06 5 75427680 75427680 C T SV2C Silent p.D35D 0.29 TCGA-D3-A8GM-06 5 75427681 75427681 C T SV2C Nonsense_Mutation p.R36* 0.29 TCGA-D3-A8GM-06 5 75621405 75621405 C T SV2C 3'UTR 0.29 TCGA-D3-A8GM-06 5 75948582 75948582 G A IQGAP2 Nonsense_Mutation p.W701* 0.25 TCGA-D3-A8GM-06 5 76129737 76129737 G A F2RL1 3'UTR 0.17 TCGA-D3-A8GM-06 5 76640747 76640747 C T PDE8B Silent p.H289H 0.14 TCGA-D3-A8GM-06 5 76649171 76649171 G A PDE8B Silent p.G369G 0.34 TCGA-D3-A8GM-06 5 78294094 78294094 G T DMGDH Missense_Mutation p.S804R 0.13 deleterious(0.01) benign(0.356) TCGA-D3-A8GM-06 5 79031612 79031612 G A CMYA5 Missense_Mutation p.D2342N 0.29 benign(0.063) TCGA-D3-A8GM-06 5 80409672 80409672 G A RASGRF2 Silent p.T801T 0.45 TCGA-D3-A8GM-06 5 80553618 80553618 G A CKMT2 Missense_Mutation p.M274I 0.19 deleterious(0) benign(0.255) TCGA-D3-A8GM-06 5 82789698 82789698 C T VCAN Silent p.F232F 0.35 TCGA-D3-A8GM-06 5 82789699 82789699 C T VCAN Missense_Mutation p.R233C 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 5 83362411 83362411 C T EDIL3 Silent p.R222R 0.38 TCGA-D3-A8GM-06 5 89940622 89940622 G A GPR98 Missense_Mutation p.G945E 0.29 probably_damaging(0.972) TCGA-D3-A8GM-06 5 89943545 89943545 G A GPR98 Missense_Mutation p.D1085N 0.28 benign(0.068) TCGA-D3-A8GM-06 5 89979463 89979463 C T GPR98 Missense_Mutation p.P1909S 0.17 probably_damaging(0.968) TCGA-D3-A8GM-06 5 89981680 89981680 C T GPR98 Missense_Mutation p.L2120F 0.31 probably_damaging(0.992) TCGA-D3-A8GM-06 5 90020778 90020778 G A GPR98 Missense_Mutation p.R3293Q 0.28 possibly_damaging(0.602) TCGA-D3-A8GM-06 5 90052412 90052412 G A GPR98 Missense_Mutation p.D3908N 0.35 probably_damaging(0.959) TCGA-D3-A8GM-06 5 90103462 90103462 C T GPR98 Silent p.F4960F 0.30 TCGA-D3-A8GM-06 5 90124769 90124769 G A GPR98 Silent p.Q5459Q 0.25 TCGA-D3-A8GM-06 5 90124770 90124770 G T GPR98 Missense_Mutation p.V5460F 0.23 benign(0.016) TCGA-D3-A8GM-06 5 90124791 90124791 G A GPR98 Missense_Mutation p.E5467K 0.42 possibly_damaging(0.636) TCGA-D3-A8GM-06 5 912018 912018 C T TRIP13 Silent p.F309F 0.19 TCGA-D3-A8GM-06 5 93294673 93294673 C T FAM172A Missense_Mutation p.V126I 0.36 tolerated(0.24) benign(0.132) TCGA-D3-A8GM-06 5 95748133 95748133 A G PCSK1 Silent p.N257N 0.26 TCGA-D3-A8GM-06 5 96225008 96225008 G A ERAP2 Silent p.L323L 0.34 TCGA-D3-A8GM-06 5 96245466 96245466 A G ERAP2 Silent p.L784L 0.43 TCGA-D3-A8GM-06 5 9630056 9630056 A C TAS2R1 Missense_Mutation p.V30G 0.33 deleterious(0.04) possibly_damaging(0.859) TCGA-D3-A8GM-06 5 98216778 98216778 A G CHD1 Splice_Site p.X1020_splice 0.11 TCGA-D3-A8GM-06 5 98217815 98217815 G A CHD1 Missense_Mutation p.R911C 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 101109679 101109682 TACC - ASCC3 Splice_Site p.X901_splice 0.21 TCGA-D3-A8GM-06 6 105606312 105606312 T - POPDC3 3'UTR 0.15 TCGA-D3-A8GM-06 6 106555294 106555294 C T PRDM1 Missense_Mutation p.P804L 0.14 tolerated(0.24) benign(0) TCGA-D3-A8GM-06 6 107113789 107113789 T C QRSL1 Missense_Mutation p.F500S 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 107390898 107390898 G A BEND3 Silent p.Y499Y 0.45 TCGA-D3-A8GM-06 6 10809161 10809161 C T MAK Missense_Mutation p.D125N 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 108535781 108535781 G A SNX3 Missense_Mutation p.P102S 0.23 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 6 10898332 10898332 T C SYCP2L Missense_Mutation p.F142S 0.41 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 6 109775262 109775262 G A MICAL1 Silent p.P46P 0.45 TCGA-D3-A8GM-06 6 109775263 109775263 G A MICAL1 Missense_Mutation p.P46L 0.43 tolerated(0.05) benign(0.001) TCGA-D3-A8GM-06 6 109871483 109871483 C T AK9 Missense_Mutation p.R925K 0.21 tolerated(1) benign(0) TCGA-D3-A8GM-06 6 111409259 111409259 T G SLC16A10 Missense_Mutation p.F102V 0.39 tolerated(0.17) possibly_damaging(0.593) TCGA-D3-A8GM-06 6 11213672 11213672 G A NEDD9 Missense_Mutation p.P101S 0.17 tolerated(0.3) benign(0) TCGA-D3-A8GM-06 6 112421881 112421881 G A FAM229B Missense_Mutation p.R45Q 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.744) TCGA-D3-A8GM-06 6 112421882 112421882 G A FAM229B Silent p.R45R 0.40 TCGA-D3-A8GM-06 6 112671625 112671625 G A RFPL4B Missense_Mutation p.E239K 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 6 114378747 114378747 C T HS3ST5 Missense_Mutation p.E239K 0.17 tolerated(0.5) benign(0.049) TCGA-D3-A8GM-06 6 116263525 116263525 G A FRK 3'UTR 0.28 TCGA-D3-A8GM-06 6 116442873 116442873 C T COL10A1 Missense_Mutation p.G136R 0.14 deleterious(0) unknown(0) TCGA-D3-A8GM-06 6 117113317 117113317 C A GPRC6A Missense_Mutation p.M923I 0.34 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GM-06 6 117232120 117232120 C T RFX6 Missense_Mutation p.S232L 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GM-06 6 117609907 117609907 C T ROS1 Missense_Mutation p.M2264I 0.35 tolerated_low_confidence(0.07) benign(0.015) TCGA-D3-A8GM-06 6 119285933 119285933 C T FAM184A Missense_Mutation p.D1013N 0.14 deleterious(0) benign(0.106) TCGA-D3-A8GM-06 6 119511033 119511033 A C MAN1A1 Missense_Mutation p.L448V 0.23 deleterious(0.01) benign(0.214) TCGA-D3-A8GM-06 6 12121983 12121983 C T HIVEP1 Missense_Mutation p.T652I 0.44 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GM-06 6 12123657 12123657 C T HIVEP1 Missense_Mutation p.S1210F 0.13 deleterious(0.02) benign(0.379) TCGA-D3-A8GM-06 6 121401968 121401968 G A TBC1D32 Silent p.Y1241Y 0.36 TCGA-D3-A8GM-06 6 121563401 121563401 A G TBC1D32 Silent p.G701G 0.15 TCGA-D3-A8GM-06 6 121563431 121563431 G - TBC1D32 Frame_Shift_Del p.G693Dfs*15 0.21 TCGA-D3-A8GM-06 6 121625551 121625551 G A TBC1D32 Nonsense_Mutation p.Q299* 0.44 TCGA-D3-A8GM-06 6 123539823 123539823 G A TRDN Missense_Mutation p.P705S 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GM-06 6 124979331 124979331 G A NKAIN2 Splice_Site p.X92_splice 0.53 TCGA-D3-A8GM-06 6 125397978 125397978 G A RNF217 Missense_Mutation p.R194K 0.42 deleterious(0.01) benign(0.294) TCGA-D3-A8GM-06 6 128222059 128222059 C T THEMIS Missense_Mutation p.E7K 0.16 tolerated(0.34) benign(0.108) TCGA-D3-A8GM-06 6 128302372 128302372 C T PTPRK Silent p.R1206R 0.40 TCGA-D3-A8GM-06 6 128403628 128403628 T A PTPRK Missense_Mutation p.K577N 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GM-06 6 129637295 129637295 G A LAMA2 Missense_Mutation p.G1346E 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 129714260 129714260 G A LAMA2 Missense_Mutation p.E1769K 0.20 tolerated(1) benign(0.013) TCGA-D3-A8GM-06 6 130497037 130497037 C T SAMD3 Silent p.R257R 0.36 TCGA-D3-A8GM-06 6 130762228 130762228 C T TMEM200A Nonsense_Mutation p.R221* 0.16 TCGA-D3-A8GM-06 6 132006597 132006597 G A ENPP3 Missense_Mutation p.R405H 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 132022491 132022491 G A OR2A4 Silent p.P17P 0.25 TCGA-D3-A8GM-06 6 132030690 132030690 A T CTAGE9 Missense_Mutation p.L490I 0.38 tolerated(0.06) probably_damaging(0.985) TCGA-D3-A8GM-06 6 13206198 13206198 C T PHACTR1 Silent p.A272A 0.38 TCGA-D3-A8GM-06 6 13206199 13206199 C T PHACTR1 Nonsense_Mutation p.Q273* 0.38 TCGA-D3-A8GM-06 6 132173374 132173374 G A ENPP1 Missense_Mutation p.G206R 0.45 deleterious(0) benign(0.259) TCGA-D3-A8GM-06 6 132193231 132193231 G A ENPP1 Missense_Mutation p.R476Q 0.34 tolerated(0.11) possibly_damaging(0.509) TCGA-D3-A8GM-06 6 132781956 132781956 G A STX7 Missense_Mutation p.L243F 0.26 tolerated(0.13) benign(0) TCGA-D3-A8GM-06 6 132938677 132938677 G A TAAR2 Missense_Mutation p.S223F 0.45 tolerated(0.91) possibly_damaging(0.863) TCGA-D3-A8GM-06 6 132966582 132966582 G A TAAR1 Silent p.S187S 0.15 TCGA-D3-A8GM-06 6 133044008 133044008 C T VNN3 3'Flank 0.17 TCGA-D3-A8GM-06 6 13365776 13365776 G A GFOD1 Silent p.F124F 0.30 TCGA-D3-A8GM-06 6 133834061 133834061 T C EYA4 Silent p.S462S 0.07 TCGA-D3-A8GM-06 6 135254094 135254094 C A ALDH8A1 Missense_Mutation p.E223D 0.15 tolerated(1) benign(0.006) TCGA-D3-A8GM-06 6 136500145 136500145 G A PDE7B Missense_Mutation p.E272K 0.38 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GM-06 6 136599563 136599563 T C BCLAF1 Silent p.K152K 0.13 TCGA-D3-A8GM-06 6 136600982 136600982 G A BCLAF1 Missense_Mutation p.S8L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 6 136667165 136667165 C T MAP7 Missense_Mutation p.E712K 0.38 deleterious(0.03) unknown(0) TCGA-D3-A8GM-06 6 138202411 138202411 C T TNFAIP3 Silent p.N776N 0.18 TCGA-D3-A8GM-06 6 138531167 138531167 G A KIAA1244 Missense_Mutation p.E114K 0.55 deleterious(0.01) benign(0.169) TCGA-D3-A8GM-06 6 139101017 139101017 C T CCDC28A Missense_Mutation p.P163S 0.33 deleterious(0.05) possibly_damaging(0.493) TCGA-D3-A8GM-06 6 139101018 139101018 C T CCDC28A Missense_Mutation p.P163L 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-D3-A8GM-06 6 139167771 139167771 G A ECT2L Missense_Mutation p.R287Q 0.19 tolerated(1) benign(0) TCGA-D3-A8GM-06 6 139186230 139186230 C T ECT2L Silent p.F463F 0.26 TCGA-D3-A8GM-06 6 13977683 13977683 C T RNF182 Silent p.T111T 0.20 TCGA-D3-A8GM-06 6 142487367 142487367 C T VTA1 Missense_Mutation p.R39C 0.15 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GM-06 6 143093314 143093314 C T HIVEP2 Silent p.G854G 0.35 TCGA-D3-A8GM-06 6 143828519 143828519 A G FUCA2 Silent p.F89F 0.39 TCGA-D3-A8GM-06 6 144832229 144832229 C T UTRN Silent p.T1638T 0.19 TCGA-D3-A8GM-06 6 146266724 146266724 T - SHPRH Frame_Shift_Del p.G458Efs*26 0.16 TCGA-D3-A8GM-06 6 146720666 146720666 T C GRM1 Missense_Mutation p.F831L 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 146875708 146875708 C A RAB32 Silent p.T215T 0.07 TCGA-D3-A8GM-06 6 147635425 147635425 G T STXBP5 Missense_Mutation p.W440L 0.49 deleterious(0) benign(0.043) TCGA-D3-A8GM-06 6 148865495 148865495 C T SASH1 Silent p.P963P 0.23 TCGA-D3-A8GM-06 6 150710561 150710561 G T IYD Missense_Mutation p.K84N 0.11 tolerated(0.14) benign(0.009) TCGA-D3-A8GM-06 6 151914356 151914356 C T CCDC170 Missense_Mutation p.R470C 0.39 deleterious(0) probably_damaging(0.924) TCGA-D3-A8GM-06 6 152540201 152540201 G A SYNE1 Silent p.L7327L 0.21 TCGA-D3-A8GM-06 6 152646393 152646393 G A SYNE1 Silent p.A5161A 0.31 TCGA-D3-A8GM-06 6 152737732 152737732 G A SYNE1 Missense_Mutation p.S1947F 0.45 possibly_damaging(0.775) TCGA-D3-A8GM-06 6 152776599 152776599 C T SYNE1 Missense_Mutation p.E952K 0.28 probably_damaging(0.995) TCGA-D3-A8GM-06 6 152806063 152806063 C T SYNE1 Silent p.Q364Q 0.24 TCGA-D3-A8GM-06 6 152809542 152809542 C T SYNE1 Missense_Mutation p.D346N 0.30 benign(0.25) TCGA-D3-A8GM-06 6 153077365 153077365 G A VIP Silent p.K144K 0.10 TCGA-D3-A8GM-06 6 153345631 153345631 G T RGS17 Nonsense_Mutation p.C70* 0.38 TCGA-D3-A8GM-06 6 154521082 154521082 A T IPCEF1 Missense_Mutation p.S210R 0.15 tolerated(0.12) benign(0.059) TCGA-D3-A8GM-06 6 154521083 154521083 C T IPCEF1 Missense_Mutation p.S210N 0.15 tolerated(0.07) benign(0.093) TCGA-D3-A8GM-06 6 154521094 154521094 C T IPCEF1 Silent p.K206K 0.41 TCGA-D3-A8GM-06 6 157510809 157510809 C T ARID1B Missense_Mutation p.P1195L 0.18 probably_damaging(0.998) TCGA-D3-A8GM-06 6 157522573 157522573 A G ARID1B Silent p.A1615A 0.04 TCGA-D3-A8GM-06 6 158507969 158507969 G A SYNJ2 Silent p.S1097S 0.12 TCGA-D3-A8GM-06 6 158900997 158900997 C T TULP4 Missense_Mutation p.P414L 0.37 tolerated(0.06) possibly_damaging(0.548) TCGA-D3-A8GM-06 6 159188461 159188461 G - EZR Frame_Shift_Del p.V477Cfs*5 0.30 TCGA-D3-A8GM-06 6 159655100 159655100 G A FNDC1 Missense_Mutation p.G1186R 0.50 tolerated_low_confidence(0.38) unknown(0) TCGA-D3-A8GM-06 6 159682295 159682295 G A FNDC1 Missense_Mutation p.E1750K 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 160201410 160201410 G A TCP1 Intron 0.38 TCGA-D3-A8GM-06 6 161012036 161012036 T G LPA Missense_Mutation p.T1243P 0.19 tolerated(0.96) probably_damaging(0.994) TCGA-D3-A8GM-06 6 161020668 161020668 C T LPA Missense_Mutation p.V1051I 0.46 tolerated(0.19) possibly_damaging(0.547) TCGA-D3-A8GM-06 6 162394441 162394441 G A PARK2 Silent p.F209F 0.20 TCGA-D3-A8GM-06 6 16327544 16327544 C T ATXN1 Missense_Mutation p.R333Q 0.13 tolerated(0.27) probably_damaging(0.973) TCGA-D3-A8GM-06 6 167753976 167753976 T G TTLL2 Missense_Mutation p.F196L 0.25 tolerated(0.24) possibly_damaging(0.551) TCGA-D3-A8GM-06 6 167754223 167754223 C T TTLL2 Missense_Mutation p.R279W 0.19 deleterious(0.04) benign(0.373) TCGA-D3-A8GM-06 6 167755172 167755173 - A TTLL2 3'UTR 0.33 TCGA-D3-A8GM-06 6 168479754 168479754 C T FRMD1 Silent p.G7G 0.21 TCGA-D3-A8GM-06 6 17665599 17665599 A G NUP153 Silent p.P362P 0.21 TCGA-D3-A8GM-06 6 18256082 18256082 T C DEK Silent p.K151K 0.36 TCGA-D3-A8GM-06 6 20481558 20481558 A T E2F3 Missense_Mutation p.E209D 0.44 tolerated(0.05) benign(0.028) TCGA-D3-A8GM-06 6 24467000 24467000 G A GPLD1 Silent p.F243F 0.40 TCGA-D3-A8GM-06 6 24523088 24523088 G A ALDH5A1 Missense_Mutation p.V383I 0.33 tolerated(0.14) benign(0.007) TCGA-D3-A8GM-06 6 24570161 24570161 C T KIAA0319 Missense_Mutation p.G654D 0.32 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GM-06 6 24581226 24581226 A G KIAA0319 Missense_Mutation p.Y403H 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 6 24596786 24596786 T C KIAA0319 Missense_Mutation p.N39S 0.46 deleterious(0.02) possibly_damaging(0.76) TCGA-D3-A8GM-06 6 25689424 25689424 C T SCGN Silent p.F184F 0.19 TCGA-D3-A8GM-06 6 25917289 25917289 G A SLC17A2 Silent p.L226L 0.17 TCGA-D3-A8GM-06 6 26094431 26094431 T C HFE Missense_Mutation p.Y342H 0.12 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 26124638 26124638 A G HIST1H2AC Missense_Mutation p.T60A 0.16 tolerated_low_confidence(0.45) probably_damaging(0.957) TCGA-D3-A8GM-06 6 2624033 2624033 G A C6orf195 Silent p.F8F 0.32 TCGA-D3-A8GM-06 6 26368897 26368897 G A BTN3A2 Missense_Mutation p.E64K 0.16 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 26406241 26406241 G A BTN3A1 Missense_Mutation p.E64K 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 26598323 26598323 T G ABT1 Missense_Mutation p.D141E 0.23 tolerated(0.07) possibly_damaging(0.728) TCGA-D3-A8GM-06 6 26846566 26846566 G A GUSBP2 RNA 0.35 TCGA-D3-A8GM-06 6 27925288 27925288 A C OR2B6 Missense_Mutation p.K90N 0.40 deleterious(0.01) benign(0.111) TCGA-D3-A8GM-06 6 28294627 28294627 A G ZSCAN31 Silent p.G179G 0.17 TCGA-D3-A8GM-06 6 28403762 28403762 C T ZSCAN23 Silent p.E94E 0.20 TCGA-D3-A8GM-06 6 28473529 28473529 T G GPX6 Missense_Mutation p.K137T 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GM-06 6 28497241 28497241 A G GPX5 Missense_Mutation p.K34R 0.17 tolerated(0.15) benign(0.001) TCGA-D3-A8GM-06 6 28540527 28540527 C T SCAND3 Missense_Mutation p.E1047K 0.20 tolerated(0.45) probably_damaging(0.954) TCGA-D3-A8GM-06 6 28554492 28554492 C T SCAND3 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D3-A8GM-06 6 2900703 2900703 C T SERPINB9 Missense_Mutation p.G48E 0.20 deleterious(0.02) possibly_damaging(0.683) TCGA-D3-A8GM-06 6 2900704 2900704 C T SERPINB9 Missense_Mutation p.G48R 0.19 deleterious(0.01) possibly_damaging(0.634) TCGA-D3-A8GM-06 6 29012229 29012229 C T OR2W1 Missense_Mutation p.G242R 0.35 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 6 29054860 29054860 G A OR2B3 Missense_Mutation p.H56Y 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-D3-A8GM-06 6 29080356 29080356 G A OR2J3 Missense_Mutation p.R230K 0.15 tolerated(0.47) benign(0.015) TCGA-D3-A8GM-06 6 29577054 29577054 A G GABBR1 Missense_Mutation p.V604A 0.24 tolerated(0.12) benign(0.329) TCGA-D3-A8GM-06 6 29638485 29638485 C T MOG Silent p.F239F 0.08 TCGA-D3-A8GM-06 6 29695864 29695864 C T HLA-F 3'Flank 0.32 TCGA-D3-A8GM-06 6 30128475 30128475 G A TRIM10 Missense_Mutation p.S54F 0.18 deleterious(0.04) benign(0.232) TCGA-D3-A8GM-06 6 30590620 30590620 C T MRPS18B Silent p.L122L 0.39 TCGA-D3-A8GM-06 6 30653028 30653028 C T PPP1R18 Silent p.L256L 0.34 TCGA-D3-A8GM-06 6 31084389 31084389 C T CDSN Missense_Mutation p.G335R 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GM-06 6 31170376 31170376 G A HCG27 Missense_Mutation p.A118T 0.19 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GM-06 6 311960 311960 G A DUSP22 Missense_Mutation p.E46K 0.09 tolerated(0.06) benign(0.083) TCGA-D3-A8GM-06 6 31583069 31583069 T G AIF1 5'UTR 0.27 TCGA-D3-A8GM-06 6 31725827 31725827 C T MSH5 Intron 0.43 TCGA-D3-A8GM-06 6 31725828 31725828 C T MSH5 Intron 0.43 TCGA-D3-A8GM-06 6 31728568 31728568 C T MSH5 Silent p.C638C 0.18 TCGA-D3-A8GM-06 6 31830621 31830621 C T NEU1 5'UTR 0.31 TCGA-D3-A8GM-06 6 31895565 31895565 C T CFB Silent p.F12F 0.42 TCGA-D3-A8GM-06 6 31911053 31911053 A T CFB Missense_Mutation p.N318I 0.23 deleterious(0.01) benign(0.412) TCGA-D3-A8GM-06 6 31914965 31914965 C T CFB Silent p.N662N 0.26 TCGA-D3-A8GM-06 6 32035607 32035607 G A TNXB Silent p.F2125F 0.24 TCGA-D3-A8GM-06 6 32036314 32036314 C T TNXB Missense_Mutation p.D2025N 0.32 probably_damaging(0.996) TCGA-D3-A8GM-06 6 32052240 32052240 C T TNXB Missense_Mutation p.G1132E 0.17 probably_damaging(0.999) TCGA-D3-A8GM-06 6 32053619 32053619 G A TNXB Missense_Mutation p.P1019L 0.26 probably_damaging(0.997) TCGA-D3-A8GM-06 6 32065783 32065783 C T TNXB Missense_Mutation p.E65K 0.41 probably_damaging(0.953) TCGA-D3-A8GM-06 6 32096573 32096573 C T FKBPL Missense_Mutation p.V329M 0.21 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 6 32096574 32096574 C T FKBPL Silent p.K328K 0.22 TCGA-D3-A8GM-06 6 32151078 32151080 CTT - AGER Intron 0.17 TCGA-D3-A8GM-06 6 32163243 32163243 T C NOTCH4 Missense_Mutation p.I1995V 0.35 tolerated_low_confidence(0.15) benign(0.005) TCGA-D3-A8GM-06 6 32168970 32168970 G A NOTCH4 Missense_Mutation p.R1355W 0.21 tolerated(0.19) benign(0.002) TCGA-D3-A8GM-06 6 32180927 32180927 G A NOTCH4 Missense_Mutation p.P808L 0.13 deleterious(0) possibly_damaging(0.735) TCGA-D3-A8GM-06 6 32261389 32261389 G A C6orf10 Missense_Mutation p.T354M 0.44 deleterious(0.03) possibly_damaging(0.556) TCGA-D3-A8GM-06 6 32805589 32805589 A G TAP2 Missense_Mutation p.L141P 0.08 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GM-06 6 33145956 33145956 G A COL11A2 Nonsense_Mutation p.R523* 0.44 TCGA-D3-A8GM-06 6 33424210 33424210 C G ZBTB9 Missense_Mutation p.R445G 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 6 33634993 33634993 G A ITPR3 Missense_Mutation p.A547T 0.21 deleterious(0.04) benign(0.202) TCGA-D3-A8GM-06 6 33657843 33657843 C T ITPR3 Silent p.F2300F 0.35 TCGA-D3-A8GM-06 6 33703179 33703179 G A IP6K3 Silent p.V25V 0.24 TCGA-D3-A8GM-06 6 348799 348799 G A DUSP22 Missense_Mutation p.E156K 0.11 tolerated(0.31) benign(0.006) TCGA-D3-A8GM-06 6 350830 350830 G A DUSP22 Missense_Mutation p.G173R 0.15 tolerated_low_confidence(0.26) benign(0.005) TCGA-D3-A8GM-06 6 35258048 35258048 T C ZNF76 Silent p.L146L 0.50 TCGA-D3-A8GM-06 6 35943178 35943178 G A SLC26A8 Nonsense_Mutation p.Q421* 0.33 TCGA-D3-A8GM-06 6 36178305 36178305 G A BRPF3 Missense_Mutation p.V727M 0.39 deleterious(0.01) benign(0.426) TCGA-D3-A8GM-06 6 36298323 36298323 G A C6orf222 Missense_Mutation p.H49Y 0.24 tolerated(0.09) benign(0.068) TCGA-D3-A8GM-06 6 36981796 36981796 G A FGD2 Missense_Mutation p.R248K 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 38561911 38561911 C T BTBD9 Silent p.E126E 0.16 TCGA-D3-A8GM-06 6 38773286 38773286 G A DNAH8 Missense_Mutation p.E805K 0.33 benign(0.002) TCGA-D3-A8GM-06 6 38851680 38851680 G A DNAH8 Missense_Mutation p.R2505Q 0.23 probably_damaging(1) TCGA-D3-A8GM-06 6 38885800 38885800 G A DNAH8 Missense_Mutation p.D3253N 0.16 benign(0.349) TCGA-D3-A8GM-06 6 38899734 38899734 C T DNAH8 Nonsense_Mutation p.Q3591* 0.20 TCGA-D3-A8GM-06 6 38903368 38903368 G A DNAH8 Missense_Mutation p.E3603K 0.38 probably_damaging(1) TCGA-D3-A8GM-06 6 38919151 38919151 G A DNAH8 Silent p.L3885L 0.35 TCGA-D3-A8GM-06 6 39024248 39024248 G A GLP1R Missense_Mutation p.E52K 0.35 tolerated(0.91) benign(0.1) TCGA-D3-A8GM-06 6 39024260 39024260 C T GLP1R Missense_Mutation p.P56S 0.18 deleterious(0.01) benign(0.293) TCGA-D3-A8GM-06 6 39387742 39387742 C T KIF6 Missense_Mutation p.E598K 0.17 tolerated(0.26) benign(0.005) TCGA-D3-A8GM-06 6 39859201 39859201 C T DAAM2 Missense_Mutation p.R744C 0.17 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 6 401620 401620 C T IRF4 Silent p.G314G 0.15 TCGA-D3-A8GM-06 6 40359905 40359905 C T LRFN2 Missense_Mutation p.G716D 0.23 tolerated(0.42) benign(0.001) TCGA-D3-A8GM-06 6 41129027 41129027 C T TREM2 Missense_Mutation p.R122K 0.46 tolerated(0.24) benign(0.038) TCGA-D3-A8GM-06 6 41654835 41654835 T G TFEB Missense_Mutation p.D267A 0.27 deleterious(0) probably_damaging(0.951) TCGA-D3-A8GM-06 6 42236916 42236916 C T TRERF1 Missense_Mutation p.G138D 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 42236917 42236917 C T TRERF1 Missense_Mutation p.G138S 0.40 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-D3-A8GM-06 6 42604878 42604878 T C UBR2 Missense_Mutation p.C602R 0.09 tolerated(0.78) benign(0.002) TCGA-D3-A8GM-06 6 42974283 42974283 C T PPP2R5D Missense_Mutation p.T63M 0.17 deleterious(0.04) benign(0.238) TCGA-D3-A8GM-06 6 43038472 43038472 A C KLC4 Missense_Mutation p.N360H 0.30 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 6 43096813 43096813 C T PTK7 Missense_Mutation p.P68S 0.29 tolerated(0.73) benign(0.002) TCGA-D3-A8GM-06 6 43305358 43305358 G A ZNF318 Silent p.A2126A 0.30 TCGA-D3-A8GM-06 6 43412049 43412049 G A ABCC10 Missense_Mutation p.G883S 0.21 tolerated(0.26) benign(0.309) TCGA-D3-A8GM-06 6 43477558 43477558 G A LRRC73 5'UTR 0.73 TCGA-D3-A8GM-06 6 44144384 44144384 G A CAPN11 Silent p.G356G 0.27 TCGA-D3-A8GM-06 6 44255294 44255294 T C TCTE1 Missense_Mutation p.N90S 0.19 deleterious(0.02) possibly_damaging(0.78) TCGA-D3-A8GM-06 6 46129128 46129128 G A ENPP5 Missense_Mutation p.H457Y 0.45 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 6 46658616 46658616 T A TDRD6 Missense_Mutation p.N917K 0.22 tolerated(0.27) benign(0.039) TCGA-D3-A8GM-06 6 46847705 46847705 C T GPR116 Missense_Mutation p.E296K 0.34 tolerated(0.17) benign(0.133) TCGA-D3-A8GM-06 6 46995448 46995448 T C GPR110 Missense_Mutation p.K40R 0.35 tolerated(0.55) benign(0.002) TCGA-D3-A8GM-06 6 47501386 47501386 C T CD2AP Missense_Mutation p.R72W 0.38 deleterious(0) benign(0.022) TCGA-D3-A8GM-06 6 47501433 47501433 C T CD2AP Silent p.T87T 0.26 TCGA-D3-A8GM-06 6 47649611 47649611 A C GPR111 Missense_Mutation p.H439P 0.22 tolerated(0.19) possibly_damaging(0.548) TCGA-D3-A8GM-06 6 47649982 47649982 C T GPR111 Silent p.L563L 0.38 TCGA-D3-A8GM-06 6 47762965 47762965 G A OPN5 Missense_Mutation p.G141E 0.55 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 47763206 47763206 G A OPN5 Silent p.K221K 0.46 TCGA-D3-A8GM-06 6 49705046 49705046 C T CRISP3 Missense_Mutation p.E45K 0.11 tolerated(0.74) benign(0.009) TCGA-D3-A8GM-06 6 49753545 49753545 G A PGK2 3'UTR 0.27 TCGA-D3-A8GM-06 6 49753829 49753829 C T PGK2 Missense_Mutation p.E358K 0.34 tolerated(0.14) benign(0.005) TCGA-D3-A8GM-06 6 49754199 49754199 C T PGK2 Missense_Mutation p.M234I 0.39 tolerated(0.25) benign(0.153) TCGA-D3-A8GM-06 6 49814265 49814265 C T CRISP1 Missense_Mutation p.D135N 0.29 tolerated(0.25) benign(0.152) TCGA-D3-A8GM-06 6 49814266 49814266 C T CRISP1 Silent p.T134T 0.31 TCGA-D3-A8GM-06 6 49986736 49986736 A C DEFB110 Missense_Mutation p.I53S 0.46 deleterious(0) benign(0.293) TCGA-D3-A8GM-06 6 50011412 50011412 G A DEFB112 Missense_Mutation p.S73L 0.38 tolerated(0.06) benign(0.117) TCGA-D3-A8GM-06 6 50683253 50683253 G A TFAP2D Missense_Mutation p.G155E 0.20 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GM-06 6 50791301 50791301 A G TFAP2B Missense_Mutation p.H88R 0.24 deleterious(0.02) benign(0.196) TCGA-D3-A8GM-06 6 51524013 51524013 A G PKHD1 Silent p.R3637R 0.30 TCGA-D3-A8GM-06 6 52344572 52344572 C T EFHC1 Missense_Mutation p.P543S 0.45 tolerated(0.55) benign(0.001) TCGA-D3-A8GM-06 6 52876667 52876667 T G ICK Silent p.G464G 0.18 TCGA-D3-A8GM-06 6 53135477 53135477 G T ELOVL5 Missense_Mutation p.P251T 0.28 deleterious(0.02) possibly_damaging(0.831) TCGA-D3-A8GM-06 6 53764562 53764562 G A LRRC1 Silent p.K220K 0.46 TCGA-D3-A8GM-06 6 54214523 54214523 C T TINAG Silent p.S303S 0.15 TCGA-D3-A8GM-06 6 54805955 54805955 C T FAM83B Missense_Mutation p.S729F 0.26 tolerated(0.11) benign(0.149) TCGA-D3-A8GM-06 6 54806330 54806330 C T FAM83B Missense_Mutation p.S854F 0.33 deleterious(0.05) benign(0.284) TCGA-D3-A8GM-06 6 56044596 56044596 C T COL21A1 Silent p.V140V 0.47 TCGA-D3-A8GM-06 6 56443642 56443642 G A DST Missense_Mutation p.P1710S 0.33 benign(0.008) TCGA-D3-A8GM-06 6 56457059 56457059 T G DST Missense_Mutation p.E1652A 0.53 probably_damaging(0.999) TCGA-D3-A8GM-06 6 56481211 56481211 C T DST Intron 0.11 TCGA-D3-A8GM-06 6 56846563 56846563 C T BEND6 5'UTR 0.13 TCGA-D3-A8GM-06 6 62757871 62757871 G A KHDRBS2 Missense_Mutation p.P83L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 62757872 62757872 G A KHDRBS2 Missense_Mutation p.P83S 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 63989784 63989784 C T LGSN 3'UTR 0.56 TCGA-D3-A8GM-06 6 64394054 64394054 G A PHF3 Missense_Mutation p.S144N 0.22 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 6 70812080 70812080 G A COL19A1 Missense_Mutation p.G415E 0.29 deleterious(0) unknown(0) TCGA-D3-A8GM-06 6 70916911 70916911 G A COL19A1 Missense_Mutation p.G1121E 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 6 70961981 70961981 C T COL9A1 Missense_Mutation p.G601E 0.13 probably_damaging(1) TCGA-D3-A8GM-06 6 70990558 70990558 C T COL9A1 Missense_Mutation p.G311E 0.31 unknown(0) TCGA-D3-A8GM-06 6 70991143 70991143 G A COL9A1 Missense_Mutation p.P276S 0.36 unknown(0) TCGA-D3-A8GM-06 6 71004188 71004188 C T COL9A1 Silent p.K126K 0.21 TCGA-D3-A8GM-06 6 71289145 71289145 G A C6orf57 Silent p.R31R 0.18 TCGA-D3-A8GM-06 6 7230296 7230296 C T RREB1 Missense_Mutation p.S655L 0.32 tolerated(0.06) probably_damaging(0.928) TCGA-D3-A8GM-06 6 7230308 7230308 G T RREB1 Missense_Mutation p.R659L 0.29 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 6 72955553 72955553 C T RIMS1 Missense_Mutation p.P706L 0.41 deleterious(0.02) possibly_damaging(0.727) TCGA-D3-A8GM-06 6 7374328 7374328 C T CAGE1 Missense_Mutation p.E242K 0.18 deleterious(0.04) probably_damaging(0.953) TCGA-D3-A8GM-06 6 73821102 73821102 G A KCNQ5 Silent p.R367R 0.11 TCGA-D3-A8GM-06 6 74072825 74072825 C T KHDC3L Silent p.G59G 0.17 TCGA-D3-A8GM-06 6 74530215 74530215 C T CD109 Missense_Mutation p.P1364S 0.31 deleterious(0.04) possibly_damaging(0.688) TCGA-D3-A8GM-06 6 7583877 7583877 C T DSP Nonsense_Mutation p.Q2128* 0.21 TCGA-D3-A8GM-06 6 76550361 76550361 C T MYO6 Nonsense_Mutation p.R205* 0.20 TCGA-D3-A8GM-06 6 76744460 76744460 G A IMPG1 Missense_Mutation p.R116C 0.28 deleterious(0) probably_damaging(0.921) TCGA-D3-A8GM-06 6 78172685 78172685 C T HTR1B Missense_Mutation p.D146N 0.22 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GM-06 6 78173000 78173000 G C HTR1B Missense_Mutation p.Q41E 0.36 tolerated(1) benign(0.053) TCGA-D3-A8GM-06 6 7884663 7884663 G A TXNDC5 Missense_Mutation p.P369S 0.22 tolerated(0.23) benign(0.373) TCGA-D3-A8GM-06 6 80750401 80750401 C T TTK Missense_Mutation p.S824F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 6 80878720 80878721 - T BCKDHB Frame_Shift_Ins p.A205Cfs*28 0.09 TCGA-D3-A8GM-06 6 82924181 82924181 T G IBTK Missense_Mutation p.N656T 0.16 tolerated(0.21) benign(0) TCGA-D3-A8GM-06 6 84108096 84108096 G A ME1 Missense_Mutation p.R118W 0.29 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 6 84234054 84234054 G A PRSS35 Silent p.T298T 0.18 TCGA-D3-A8GM-06 6 84290192 84290192 G A SNAP91 Missense_Mutation p.S759L 0.26 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GM-06 6 84372071 84372071 G A SNAP91 Missense_Mutation p.S115F 0.25 tolerated(0.17) unknown(0) TCGA-D3-A8GM-06 6 84634211 84634211 A - CYB5R4 Frame_Shift_Del p.I240* 0.19 TCGA-D3-A8GM-06 6 85446778 85446778 G A TBX18 Silent p.T483T 0.36 TCGA-D3-A8GM-06 6 87725829 87725829 C T HTR1E Silent p.F259F 0.16 TCGA-D3-A8GM-06 6 87726181 87726181 C T HTR1E 3'UTR 0.35 TCGA-D3-A8GM-06 6 87796021 87796021 G A CGA Nonsense_Mutation p.Q74* 0.19 TCGA-D3-A8GM-06 6 87796031 87796031 C T CGA Silent p.T70T 0.36 TCGA-D3-A8GM-06 6 88773927 88773927 A T SPACA1 Missense_Mutation p.I241F 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GM-06 6 88854620 88854620 G A CNR1 Missense_Mutation p.T125M 0.17 tolerated(0.23) possibly_damaging(0.891) TCGA-D3-A8GM-06 6 89974245 89974245 C T GABRR2 Silent p.V324V 0.12 TCGA-D3-A8GM-06 6 90333666 90333666 C T ANKRD6 Missense_Mutation p.H370Y 0.18 deleterious(0.02) benign(0.065) TCGA-D3-A8GM-06 6 90481294 90481294 T C MDN1 Silent p.A710A 0.44 TCGA-D3-A8GM-06 6 91281496 91281496 A G MAP3K7 Missense_Mutation p.C51R 0.28 tolerated(0.39) benign(0.126) TCGA-D3-A8GM-06 6 97247158 97247158 C T GPR63 Silent p.G150G 0.42 TCGA-D3-A8GM-06 6 99365473 99365473 G A FBXL4 Missense_Mutation p.S212F 0.18 deleterious(0) possibly_damaging(0.748) TCGA-D3-A8GM-06 7 100173902 100173902 G - LRCH4 Frame_Shift_Del p.Q533Rfs*8 0.11 TCGA-D3-A8GM-06 7 100184195 100184195 G A FBXO24 5'Flank 0.38 TCGA-D3-A8GM-06 7 100184219 100184219 C T FBXO24 5'Flank 0.13 TCGA-D3-A8GM-06 7 100252677 100252677 G A ACTL6B Missense_Mutation p.P112S 0.26 tolerated(0.9) benign(0.024) TCGA-D3-A8GM-06 7 100253079 100253079 C T ACTL6B Missense_Mutation p.G78E 0.15 tolerated(0.24) benign(0.035) TCGA-D3-A8GM-06 7 100275903 100275903 C T GNB2 Missense_Mutation p.S227F 0.32 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 7 100281027 100281027 T C GIGYF1 Missense_Mutation p.E698G 0.23 deleterious(0.01) unknown(0) TCGA-D3-A8GM-06 7 100284971 100284971 G A GIGYF1 Silent p.A144A 0.13 TCGA-D3-A8GM-06 7 100284973 100284973 C T GIGYF1 Missense_Mutation p.A144T 0.13 tolerated(0.08) unknown(0) TCGA-D3-A8GM-06 7 100349550 100349550 C T ZAN Missense_Mutation p.P608S 0.15 benign(0.093) TCGA-D3-A8GM-06 7 100350185 100350185 G A ZAN Missense_Mutation p.M819I 0.20 unknown(0) TCGA-D3-A8GM-06 7 100610344 100610344 C T MUC3A 3'UTR 0.15 TCGA-D3-A8GM-06 7 100679726 100679726 G A MUC17 Missense_Mutation p.G1677S 0.17 benign(0.064) TCGA-D3-A8GM-06 7 100680996 100680996 G A MUC17 Missense_Mutation p.G2100E 0.21 unknown(0) TCGA-D3-A8GM-06 7 100681827 100681827 C T MUC17 Missense_Mutation p.S2377L 0.22 unknown(0) TCGA-D3-A8GM-06 7 100685945 100685945 G A MUC17 Missense_Mutation p.E3750K 0.17 benign(0.004) TCGA-D3-A8GM-06 7 100692630 100692630 C T MUC17 Missense_Mutation p.P4230L 0.19 unknown(0) TCGA-D3-A8GM-06 7 100730641 100730641 C T TRIM56 Silent p.S16S 0.05 TCGA-D3-A8GM-06 7 100803919 100803919 G T AP1S1 3'UTR 0.15 TCGA-D3-A8GM-06 7 102614105 102614105 C T FBXL13 Intron 0.33 TCGA-D3-A8GM-06 7 102665645 102665645 C T FBXL13 Nonsense_Mutation p.W120* 0.42 TCGA-D3-A8GM-06 7 102669114 102669114 G A FBXL13 Silent p.F50F 0.15 TCGA-D3-A8GM-06 7 1026994 1026994 G A CYP2W1 Missense_Mutation p.E324K 0.25 tolerated(0.07) benign(0.259) TCGA-D3-A8GM-06 7 103050937 103050937 G A SLC26A5 Silent p.V210V 0.11 TCGA-D3-A8GM-06 7 103138369 103138369 G A RELN Silent p.L2950L 0.32 TCGA-D3-A8GM-06 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.25 TCGA-D3-A8GM-06 7 105103118 105103118 G A PUS7 Silent p.S569S 0.38 TCGA-D3-A8GM-06 7 106871069 106871069 C T COG5 Missense_Mutation p.R751K 0.15 deleterious(0.01) possibly_damaging(0.854) TCGA-D3-A8GM-06 7 107314617 107314617 C T SLC26A4 Missense_Mutation p.P142S 0.14 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GM-06 7 107338510 107338510 G A SLC26A4 Missense_Mutation p.S523N 0.23 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 7 107399625 107399625 A C CBLL1 3'UTR 0.28 TCGA-D3-A8GM-06 7 107423494 107423494 G A SLC26A3 Silent p.F388F 0.35 TCGA-D3-A8GM-06 7 107564768 107564768 C T LAMB1 Missense_Mutation p.E1711K 0.22 tolerated(0.53) benign(0.138) TCGA-D3-A8GM-06 7 107664549 107664549 G A LAMB4 Nonsense_Mutation p.Q1741* 0.54 TCGA-D3-A8GM-06 7 107875285 107875285 T - NRCAM Intron 0.10 TCGA-D3-A8GM-06 7 110763519 110763519 G A LRRN3 Missense_Mutation p.A231T 0.18 tolerated(0.09) possibly_damaging(0.831) TCGA-D3-A8GM-06 7 111368498 111368498 C T DOCK4 Silent p.R1911R 0.28 TCGA-D3-A8GM-06 7 112461872 112461872 G A C7orf60 Missense_Mutation p.S382L 0.35 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-D3-A8GM-06 7 112723983 112723983 G A GPR85 Missense_Mutation p.T265I 0.37 tolerated(0.2) benign(0) TCGA-D3-A8GM-06 7 113517910 113517910 G A PPP1R3A Silent p.F1079F 0.13 TCGA-D3-A8GM-06 7 113558743 113558743 T A PPP1R3A Missense_Mutation p.E103D 0.21 deleterious(0.02) possibly_damaging(0.902) TCGA-D3-A8GM-06 7 114304425 114304425 A T FOXP2 Missense_Mutation p.N671I 0.42 deleterious(0.01) benign(0.007) TCGA-D3-A8GM-06 7 116165024 116165024 C - CAV1 5'UTR 0.15 TCGA-D3-A8GM-06 7 116199133 116199133 C T CAV1 Missense_Mutation p.P110L 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 116339180 116339180 C T MET Silent p.L14L 0.17 TCGA-D3-A8GM-06 7 116395483 116395483 G A MET Silent p.R592R 0.12 TCGA-D3-A8GM-06 7 116436327 116436327 G A MET 3'UTR 0.39 TCGA-D3-A8GM-06 7 116918399 116918399 G A WNT2 Missense_Mutation p.S298F 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 7 117067417 117067417 G A ASZ1 Missense_Mutation p.T33M 0.22 tolerated(0.1) benign(0.238) TCGA-D3-A8GM-06 7 117067454 117067454 C T ASZ1 Missense_Mutation p.E21K 0.34 tolerated(0.09) benign(0.185) TCGA-D3-A8GM-06 7 117149094 117149094 G A CFTR Nonsense_Mutation p.W57* 0.11 TCGA-D3-A8GM-06 7 117188696 117188696 G A CFTR Missense_Mutation p.G404E 0.14 deleterious(0.01) benign(0.002) TCGA-D3-A8GM-06 7 117432625 117432625 A G CTTNBP2 Silent p.L209L 0.29 TCGA-D3-A8GM-06 7 120382568 120382568 C G KCND2 Nonsense_Mutation p.S460* 0.33 TCGA-D3-A8GM-06 7 120629777 120629777 C T CPED1 Silent p.T34T 0.16 TCGA-D3-A8GM-06 7 120768474 120768474 C T CPED1 Silent p.S447S 0.20 TCGA-D3-A8GM-06 7 120901693 120901693 T C CPED1 Intron 0.37 TCGA-D3-A8GM-06 7 120911374 120911374 A T CPED1 Missense_Mutation p.I920F 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 7 121659204 121659204 C T PTPRZ1 Missense_Mutation p.R1624C 0.10 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 7 121960165 121960167 AAT - CADPS2 3'UTR 0.18 TCGA-D3-A8GM-06 7 122635248 122635248 C T TAS2R16 Silent p.G147G 0.18 TCGA-D3-A8GM-06 7 122635581 122635581 C T TAS2R16 Nonsense_Mutation p.W36* 0.20 TCGA-D3-A8GM-06 7 122755436 122755436 G A SLC13A1 3'UTR 0.50 TCGA-D3-A8GM-06 7 123092915 123092915 G A IQUB Missense_Mutation p.S753F 0.27 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GM-06 7 123097516 123097516 G A IQUB Silent p.S704S 0.35 TCGA-D3-A8GM-06 7 123097522 123097522 A T IQUB Missense_Mutation p.N702K 0.18 deleterious(0) benign(0.071) TCGA-D3-A8GM-06 7 123296130 123296130 A T LMOD2 Missense_Mutation p.E38V 0.15 tolerated(0.06) possibly_damaging(0.823) TCGA-D3-A8GM-06 7 123508754 123508754 G A HYAL4 Missense_Mutation p.V143I 0.31 tolerated(0.06) benign(0.269) TCGA-D3-A8GM-06 7 123594244 123594244 G A SPAM1 Missense_Mutation p.G207E 0.35 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 7 126079219 126079219 G A GRM8 Missense_Mutation p.S894F 0.19 tolerated(0.08) possibly_damaging(0.485) TCGA-D3-A8GM-06 7 126173630 126173630 G A GRM8 Silent p.I602I 0.18 TCGA-D3-A8GM-06 7 126173849 126173849 C T GRM8 Silent p.V529V 0.15 TCGA-D3-A8GM-06 7 126249430 126249430 G A GRM8 Nonsense_Mutation p.Q494* 0.25 TCGA-D3-A8GM-06 7 126698169 126698169 C T GRM8 Intron 0.11 TCGA-D3-A8GM-06 7 127014749 127014749 G A ZNF800 Missense_Mutation p.S214L 0.36 tolerated(0.31) benign(0) TCGA-D3-A8GM-06 7 127255000 127255000 G A PAX4 Silent p.L90L 0.26 TCGA-D3-A8GM-06 7 127637844 127637844 C T SND1 Intron 0.36 TCGA-D3-A8GM-06 7 127670459 127670459 A C LRRC4 Missense_Mutation p.Y79D 0.21 deleterious(0.02) benign(0.209) TCGA-D3-A8GM-06 7 127975984 127975984 T A RBM28 Missense_Mutation p.E242D 0.11 tolerated(0.89) benign(0) TCGA-D3-A8GM-06 7 128049537 128049537 G A IMPDH1 Missense_Mutation p.P50S 0.13 tolerated_low_confidence(0.46) benign(0.001) TCGA-D3-A8GM-06 7 128138184 128138184 C T METTL2B Missense_Mutation p.R302W 0.19 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 7 128142110 128142110 G T METTL2B 3'UTR 0.08 TCGA-D3-A8GM-06 7 128355443 128355443 G A FAM71F1 5'UTR 0.29 TCGA-D3-A8GM-06 7 128388751 128388751 T G CALU Silent p.V46V 0.35 TCGA-D3-A8GM-06 7 128445836 128445836 T C CCDC136 Silent p.L324L 0.33 TCGA-D3-A8GM-06 7 128624292 128624292 C T TNPO3 Missense_Mutation p.R571Q 0.29 tolerated(0.19) benign(0.028) TCGA-D3-A8GM-06 7 129125462 129125462 C G STRIP2 Missense_Mutation p.T766S 0.18 tolerated(0.18) benign(0.129) TCGA-D3-A8GM-06 7 129125463 129125463 C T STRIP2 Silent p.T766T 0.18 TCGA-D3-A8GM-06 7 129855878 129855878 G A SSMEM1 Missense_Mutation p.M101I 0.19 tolerated(0.27) benign(0.043) TCGA-D3-A8GM-06 7 131172533 131172533 C T MKLN1 3'UTR 0.45 TCGA-D3-A8GM-06 7 131194239 131194239 G A PODXL Missense_Mutation p.T303M 0.26 tolerated(0.2) benign(0.007) TCGA-D3-A8GM-06 7 131870142 131870142 C T PLXNA4 Missense_Mutation p.R1025K 0.18 tolerated(0.27) benign(0.003) TCGA-D3-A8GM-06 7 134212588 134212588 A G AKR1B10 5'UTR 0.28 TCGA-D3-A8GM-06 7 134217773 134217773 C T AKR1B10 Silent p.F123F 0.32 TCGA-D3-A8GM-06 7 134256368 134256368 T - AKR1B15 Frame_Shift_Del p.F151Sfs*9 0.20 TCGA-D3-A8GM-06 7 135261117 135261117 C T NUP205 Missense_Mutation p.A148V 0.33 tolerated(0.1) benign(0.142) TCGA-D3-A8GM-06 7 135406253 135406253 C T SLC13A4 Missense_Mutation p.V40M 0.29 deleterious(0.03) possibly_damaging(0.746) TCGA-D3-A8GM-06 7 135406272 135406272 C T SLC13A4 Splice_Site p.X34_splice 0.12 TCGA-D3-A8GM-06 7 135418747 135418747 G - FAM180A Frame_Shift_Del p.S167Hfs*23 0.29 TCGA-D3-A8GM-06 7 136699747 136699747 G A CHRM2 Missense_Mutation p.M45I 0.21 tolerated(0.19) benign(0.401) TCGA-D3-A8GM-06 7 137304602 137304602 G A DGKI Missense_Mutation p.P321S 0.33 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 7 137773486 137773486 G A AKR1D1 Missense_Mutation p.R78Q 0.18 deleterious(0.02) benign(0.001) TCGA-D3-A8GM-06 7 137773487 137773487 G A AKR1D1 Silent p.R78R 0.17 TCGA-D3-A8GM-06 7 138333860 138333860 A G SVOPL Missense_Mutation p.L186P 0.08 deleterious(0.01) possibly_damaging(0.857) TCGA-D3-A8GM-06 7 138413510 138413510 G A ATP6V0A4 Missense_Mutation p.S669F 0.16 tolerated(0.06) possibly_damaging(0.857) TCGA-D3-A8GM-06 7 138429959 138429959 C T ATP6V0A4 Missense_Mutation p.G463S 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 138554363 138554363 G A KIAA1549 Missense_Mutation p.R1566C 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 138556056 138556056 G A KIAA1549 Silent p.F1466F 0.14 TCGA-D3-A8GM-06 7 139257697 139257697 C T HIPK2 Silent p.K1191K 0.28 TCGA-D3-A8GM-06 7 139715608 139715609 - A TBXAS1 Frame_Shift_Ins p.L485Hfs*4 0.11 TCGA-D3-A8GM-06 7 140048559 140048559 C T SLC37A3 Silent p.L297L 0.43 TCGA-D3-A8GM-06 7 140454031 140454031 T C BRAF Missense_Mutation p.Y566C 0.12 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 140706242 140706242 T C MRPS33 Silent p.A103A 0.35 TCGA-D3-A8GM-06 7 141365003 141365003 C A KIAA1147 Missense_Mutation p.E312D 0.10 deleterious(0.05) benign(0.266) TCGA-D3-A8GM-06 7 141418989 141418989 G A WEE2 Missense_Mutation p.G235R 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 141418990 141418990 G A WEE2 Missense_Mutation p.G235E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 141619077 141619077 C T OR9A4 Silent p.I134I 0.17 TCGA-D3-A8GM-06 7 141619385 141619385 C T OR9A4 Missense_Mutation p.S237F 0.17 deleterious(0) possibly_damaging(0.723) TCGA-D3-A8GM-06 7 141672561 141672561 G A TAS2R38 Missense_Mutation p.T310I 0.25 tolerated(0.13) benign(0.061) TCGA-D3-A8GM-06 7 141672599 141672599 C T TAS2R38 Silent p.L297L 0.21 TCGA-D3-A8GM-06 7 141672669 141672669 C T TAS2R38 Missense_Mutation p.R274H 0.06 tolerated(1) benign(0) TCGA-D3-A8GM-06 7 141673292 141673292 G A TAS2R38 Silent p.F66F 0.35 TCGA-D3-A8GM-06 7 141752715 141752715 C T MGAM Silent p.F1030F 0.16 TCGA-D3-A8GM-06 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A8GM-06 7 141755509 141755509 C T MGAM Nonsense_Mutation p.R1156* 0.25 TCGA-D3-A8GM-06 7 141755519 141755519 C T MGAM Missense_Mutation p.P1159L 0.27 deleterious(0) benign(0.396) TCGA-D3-A8GM-06 7 141765134 141765134 G A MGAM Splice_Site p.X1495_splice 0.30 TCGA-D3-A8GM-06 7 141952147 141952147 C T PRSS58 Missense_Mutation p.G207E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 142013295 142013295 T C TRBV4-1 Silent p.A50A 0.35 TCGA-D3-A8GM-06 7 142013374 142013374 G A TRBV4-1 Missense_Mutation p.E77K 0.17 tolerated(0.11) benign(0.027) TCGA-D3-A8GM-06 7 142021257 142021257 C T TRBV5-1 Silent p.F79F 0.27 TCGA-D3-A8GM-06 7 142111429 142111429 C T TRBV5-7 Missense_Mutation p.G103R 0.15 tolerated(0.17) possibly_damaging(0.852) TCGA-D3-A8GM-06 7 142131445 142131445 C T TRBV5-6 Missense_Mutation p.D104N 0.19 deleterious(0.01) possibly_damaging(0.658) TCGA-D3-A8GM-06 7 142139765 142139765 G A TRBV7-6 Silent p.G2G 0.14 TCGA-D3-A8GM-06 7 142162398 142162398 C T TRBV6-6 5'UTR 0.24 TCGA-D3-A8GM-06 7 142168601 142168601 C T TRBV5-4 Missense_Mutation p.R41K 0.12 tolerated(0.35) benign(0.023) TCGA-D3-A8GM-06 7 142168910 142168910 G A TRBV5-4 5'UTR 0.15 TCGA-D3-A8GM-06 7 142176422 142176422 G A TRBV7-4 Missense_Mutation p.S85F 0.23 tolerated(0.08) benign(0.168) TCGA-D3-A8GM-06 7 142206977 142206977 G A TRBV10-2 5'UTR 0.19 TCGA-D3-A8GM-06 7 142378653 142378653 G A MTRNR2L6 3'Flank 0.43 TCGA-D3-A8GM-06 7 142458459 142458459 G A PRSS1 Missense_Mutation p.E32K 0.10 tolerated(0.97) benign(0) TCGA-D3-A8GM-06 7 142460296 142460296 G A PRSS1 Missense_Mutation p.E157K 0.05 tolerated(0.94) benign(0.002) TCGA-D3-A8GM-06 7 142481267 142481267 C T PRSS3P2 RNA 0.26 TCGA-D3-A8GM-06 7 142481332 142481332 G A PRSS3P2 RNA 0.26 TCGA-D3-A8GM-06 7 142564686 142564686 C T EPHB6 Missense_Mutation p.T537I 0.19 tolerated(0.44) benign(0.169) TCGA-D3-A8GM-06 7 142564687 142564687 C T EPHB6 Silent p.T537T 0.18 TCGA-D3-A8GM-06 7 142611831 142611831 C T TRPV5 Missense_Mutation p.V500I 0.23 tolerated(0.1) probably_damaging(0.991) TCGA-D3-A8GM-06 7 142625227 142625227 C T TRPV5 Missense_Mutation p.E289K 0.13 tolerated(0.16) benign(0.005) TCGA-D3-A8GM-06 7 142639521 142639521 C A KEL Missense_Mutation p.Q679H 0.22 tolerated(0.29) possibly_damaging(0.759) TCGA-D3-A8GM-06 7 142651295 142651295 C T KEL Silent p.Q300Q 0.39 TCGA-D3-A8GM-06 7 142749911 142749911 C T OR6V1 Silent p.V158V 0.14 TCGA-D3-A8GM-06 7 142829225 142829225 C T PIP Missense_Mutation p.L6F 0.13 tolerated(0.14) benign(0.004) TCGA-D3-A8GM-06 7 142880676 142880676 C T TAS2R39 Silent p.I55I 0.17 TCGA-D3-A8GM-06 7 142962100 142962100 T C GSTK1 Missense_Mutation p.M100T 0.09 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GM-06 7 143036360 143036360 C T CLCN1 Silent p.I472I 0.36 TCGA-D3-A8GM-06 7 143088816 143088816 T C EPHA1 Missense_Mutation p.T917A 0.09 deleterious(0) benign(0.005) TCGA-D3-A8GM-06 7 143140557 143140557 C T TAS2R60 Silent p.D4D 0.18 TCGA-D3-A8GM-06 7 143140595 143140595 C T TAS2R60 Missense_Mutation p.A17V 0.31 tolerated(1) benign(0.008) TCGA-D3-A8GM-06 7 143175857 143175857 C T TAS2R41 Silent p.L298L 0.32 TCGA-D3-A8GM-06 7 143417915 143417915 C T FAM115C Intron 0.62 TCGA-D3-A8GM-06 7 143421600 143421600 C T FAM115C Missense_Mutation p.P772L 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 7 143453536 143453536 C T CTAGE6 Missense_Mutation p.E406K 0.23 deleterious(0.01) possibly_damaging(0.828) TCGA-D3-A8GM-06 7 143453763 143453763 C T CTAGE6 Missense_Mutation p.S330N 0.09 deleterious(0) benign(0.096) TCGA-D3-A8GM-06 7 143657298 143657298 C T OR2F1 Missense_Mutation p.P79S 0.16 deleterious(0.01) possibly_damaging(0.458) TCGA-D3-A8GM-06 7 143792605 143792605 G A OR2A12 Missense_Mutation p.M135I 0.15 deleterious(0.02) benign(0.157) TCGA-D3-A8GM-06 7 143792878 143792878 G A OR2A12 Silent p.R226R 0.23 TCGA-D3-A8GM-06 7 143807338 143807338 C T OR2A2 Silent p.L221L 0.17 TCGA-D3-A8GM-06 7 143882755 143882755 C T CTAGE4 Missense_Mutation p.P720L 0.08 tolerated(0.12) benign(0.444) TCGA-D3-A8GM-06 7 144015452 144015452 C T OR2A1 Nonsense_Mutation p.Q79* 0.11 TCGA-D3-A8GM-06 7 14722404 14722404 A G DGKB Missense_Mutation p.Y298H 0.15 deleterious(0) benign(0.168) TCGA-D3-A8GM-06 7 148463817 148463817 T G CUL1 Splice_Site p.X318_splice 0.16 TCGA-D3-A8GM-06 7 149255895 149255895 A G ZNF767 RNA 0.38 TCGA-D3-A8GM-06 7 149431007 149431007 A G KRBA1 Silent p.S987S 0.14 TCGA-D3-A8GM-06 7 149477950 149477950 C T SSPO RNA 0.25 TCGA-D3-A8GM-06 7 149481003 149481003 G A SSPO RNA 0.23 TCGA-D3-A8GM-06 7 149481004 149481004 G T SSPO RNA 0.23 TCGA-D3-A8GM-06 7 149482315 149482315 T C SSPO Splice_Site 0.11 TCGA-D3-A8GM-06 7 149509110 149509110 C T SSPO RNA 0.38 TCGA-D3-A8GM-06 7 149986651 149986651 T C ACTR3C Missense_Mutation p.K62R 0.09 tolerated(0.13) benign(0.111) TCGA-D3-A8GM-06 7 150028108 150028108 C T ZBED6CL Silent p.T205T 0.09 TCGA-D3-A8GM-06 7 150269722 150269722 G C GIMAP4 Silent p.A188A 0.12 TCGA-D3-A8GM-06 7 150389580 150389580 G A GIMAP2 Missense_Mutation p.G69E 0.32 tolerated(0.16) benign(0.091) TCGA-D3-A8GM-06 7 150390165 150390165 G A GIMAP2 Missense_Mutation p.G264E 0.14 tolerated(0.07) benign(0.002) TCGA-D3-A8GM-06 7 150417509 150417509 C T GIMAP1 Silent p.F139F 0.18 TCGA-D3-A8GM-06 7 150417986 150417986 G A GIMAP1 Silent p.E298E 0.23 TCGA-D3-A8GM-06 7 150489175 150489175 C T TMEM176B Missense_Mutation p.R230Q 0.34 tolerated(0.17) benign(0.426) TCGA-D3-A8GM-06 7 150493698 150493698 G A TMEM176B Intron 0.40 TCGA-D3-A8GM-06 7 150493728 150493728 G T TMEM176B Intron 0.22 TCGA-D3-A8GM-06 7 150498751 150498751 C T TMEM176A Missense_Mutation p.S38F 0.42 tolerated(0.08) benign(0.267) TCGA-D3-A8GM-06 7 150555943 150555943 G A AOC1 Missense_Mutation p.E555K 0.16 tolerated(1) benign(0.005) TCGA-D3-A8GM-06 7 150644705 150644705 T C KCNH2 Missense_Mutation p.N985S 0.15 tolerated(0.25) possibly_damaging(0.899) TCGA-D3-A8GM-06 7 150648897 150648897 C T KCNH2 Silent p.R528R 0.37 TCGA-D3-A8GM-06 7 150656745 150656745 G A KCNH2 Silent p.F129F 0.20 TCGA-D3-A8GM-06 7 150710442 150710442 T C NOS3 Missense_Mutation p.F1077S 0.16 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 7 150748896 150748896 G T ASIC3 Splice_Site p.X405_splice 0.12 TCGA-D3-A8GM-06 7 150752635 150752635 C T CDK5 Missense_Mutation p.R156H 0.29 deleterious(0) possibly_damaging(0.904) TCGA-D3-A8GM-06 7 150774332 150774332 G C FASTK Intron 0.25 TCGA-D3-A8GM-06 7 150784006 150784006 C T AGAP3 Nonsense_Mutation p.Q60* 0.43 TCGA-D3-A8GM-06 7 150911016 150911016 G A ABCF2 Intron 0.40 TCGA-D3-A8GM-06 7 150918717 150918717 C G ABCF2 Missense_Mutation p.G290R 0.36 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GM-06 7 150935694 150935694 A G CHPF2 Missense_Mutation p.N749S 0.15 tolerated(0.25) benign(0.115) TCGA-D3-A8GM-06 7 151064952 151064952 T A NUB1 Missense_Mutation p.N355K 0.30 deleterious(0.02) benign(0.205) TCGA-D3-A8GM-06 7 151072994 151072994 C T NUB1 Missense_Mutation p.R510C 0.31 tolerated(0.06) benign(0.002) TCGA-D3-A8GM-06 7 151664361 151664361 C T GALNTL5 Silent p.F10F 0.15 TCGA-D3-A8GM-06 7 151684286 151684286 G A GALNTL5 Missense_Mutation p.R193Q 0.18 tolerated(0.5) probably_damaging(1) TCGA-D3-A8GM-06 7 151684287 151684287 G A GALNTL5 Silent p.R193R 0.21 TCGA-D3-A8GM-06 7 151791275 151791275 G A GALNT11 Intron 0.15 TCGA-D3-A8GM-06 7 151859931 151859931 G A KMT2C Silent p.T3577T 0.20 TCGA-D3-A8GM-06 7 151874311 151874311 G A KMT2C Missense_Mutation p.P2743S 0.23 probably_damaging(0.91) TCGA-D3-A8GM-06 7 151949710 151949710 C T KMT2C Missense_Mutation p.D464N 0.14 benign(0.423) TCGA-D3-A8GM-06 7 155301739 155301739 A G CNPY1 5'UTR 0.31 TCGA-D3-A8GM-06 7 156436560 156436560 T A RNF32 5'UTR 0.13 TCGA-D3-A8GM-06 7 15666425 15666425 G C MEOX2 Silent p.L212L 0.23 TCGA-D3-A8GM-06 7 156759043 156759043 C T NOM1 Missense_Mutation p.P705S 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-D3-A8GM-06 7 157175009 157175009 C T DNAJB6 Missense_Mutation p.S139L 0.14 deleterious(0.04) benign(0.32) TCGA-D3-A8GM-06 7 157388004 157388004 C T PTPRN2 Missense_Mutation p.D808N 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 7 157691401 157691401 G T PTPRN2 Silent p.T584T 0.13 TCGA-D3-A8GM-06 7 157926749 157926749 G A PTPRN2 Silent p.V392V 0.12 TCGA-D3-A8GM-06 7 158566038 158566038 C A ESYT2 Missense_Mutation p.G314V 0.11 deleterious(0.01) possibly_damaging(0.607) TCGA-D3-A8GM-06 7 158935207 158935207 G A VIPR2 Missense_Mutation p.H28Y 0.34 tolerated(1) benign(0.115) TCGA-D3-A8GM-06 7 18066876 18066876 C T PRPS1L1 Missense_Mutation p.R177K 0.30 deleterious(0) possibly_damaging(0.735) TCGA-D3-A8GM-06 7 18767304 18767304 G A HDAC9 Silent p.R611R 0.23 TCGA-D3-A8GM-06 7 19184704 19184704 C T FERD3L Silent p.R94R 0.21 TCGA-D3-A8GM-06 7 19748660 19748697 CGGCGCGCGCCGTTGACGCAAGCACAATCCCATGTCCC - TWISTNB 5'UTR 0.09 TCGA-D3-A8GM-06 7 20198670 20198670 A T MACC1 Missense_Mutation p.F438L 0.28 tolerated(0.26) benign(0.004) TCGA-D3-A8GM-06 7 21603868 21603868 C T DNAH11 Silent p.L349L 0.20 TCGA-D3-A8GM-06 7 21657237 21657237 G A DNAH11 Missense_Mutation p.E1371K 0.28 benign(0.359) TCGA-D3-A8GM-06 7 21675635 21675635 T A DNAH11 Silent p.I1554I 0.24 TCGA-D3-A8GM-06 7 21813472 21813472 G A DNAH11 Missense_Mutation p.R3071K 0.29 benign(0.008) TCGA-D3-A8GM-06 7 21946033 21946033 G A CDCA7L Silent p.I265I 0.28 TCGA-D3-A8GM-06 7 22175740 22175740 G A RAPGEF5 Missense_Mutation p.P625S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 2411438 2411438 C T EIF3B Silent p.F547F 0.22 TCGA-D3-A8GM-06 7 24874258 24874258 G A OSBPL3 Silent p.I531I 0.17 TCGA-D3-A8GM-06 7 25266469 25266469 T G NPVF Silent p.T105T 0.32 TCGA-D3-A8GM-06 7 27140810 27140810 T C HOXA2 Silent p.K222K 0.19 TCGA-D3-A8GM-06 7 27147571 27147571 C T HOXA3 Missense_Mutation p.G432E 0.32 deleterious(0.03) probably_damaging(0.993) TCGA-D3-A8GM-06 7 27285560 27285560 G A EVX1 Nonsense_Mutation p.W247* 0.29 TCGA-D3-A8GM-06 7 29440198 29440198 C T CHN2 Silent p.D110D 0.21 TCGA-D3-A8GM-06 7 29549003 29549003 C T CHN2 Silent p.L406L 0.38 TCGA-D3-A8GM-06 7 2977657 2977657 C T CARD11 Missense_Mutation p.E343K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 7 2987257 2987257 C T CARD11 Missense_Mutation p.D58N 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 31682466 31682466 A G CCDC129 Silent p.E520E 0.31 TCGA-D3-A8GM-06 7 31682791 31682791 G A CCDC129 Missense_Mutation p.D629N 0.30 tolerated(0.08) probably_damaging(0.911) TCGA-D3-A8GM-06 7 31792919 31792919 G A PDE1C 3'UTR 0.24 TCGA-D3-A8GM-06 7 31862715 31862715 C T PDE1C Silent p.R578R 0.32 TCGA-D3-A8GM-06 7 34118470 34118470 G A BMPER Silent p.K360K 0.28 TCGA-D3-A8GM-06 7 37311468 37311468 T - ELMO1 Frame_Shift_Del p.N71Mfs*7 0.32 TCGA-D3-A8GM-06 7 37907434 37907434 G A NME8 Missense_Mutation p.R251Q 0.23 tolerated(0.62) benign(0.001) TCGA-D3-A8GM-06 7 37916531 37916531 G A NME8 Missense_Mutation p.D306N 0.33 tolerated(0.63) benign(0.052) TCGA-D3-A8GM-06 7 38908754 38908754 G A VPS41 Missense_Mutation p.H54Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 7 39379570 39379570 G A POU6F2 Missense_Mutation p.G281R 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GM-06 7 4185520 4185520 G A SDK1 Silent p.E1465E 0.27 TCGA-D3-A8GM-06 7 42003848 42003848 A T GLI3 3'UTR 0.48 TCGA-D3-A8GM-06 7 42006195 42006195 G A GLI3 Missense_Mutation p.L826F 0.28 tolerated(0.31) benign(0.273) TCGA-D3-A8GM-06 7 43436462 43436462 G A HECW1 Missense_Mutation p.R202Q 0.13 deleterious(0.02) possibly_damaging(0.82) TCGA-D3-A8GM-06 7 43843403 43843403 C T BLVRA Nonsense_Mutation p.Q197* 0.30 TCGA-D3-A8GM-06 7 44044893 44044893 C T SPDYE1 Intron 0.21 TCGA-D3-A8GM-06 7 44555798 44555798 T C NPC1L1 Splice_Site p.X1201_splice 0.67 TCGA-D3-A8GM-06 7 44611098 44611098 G A DDX56 Missense_Mutation p.R295C 0.14 deleterious(0.03) benign(0.008) TCGA-D3-A8GM-06 7 44685028 44685028 C T OGDH Missense_Mutation p.H109Y 0.32 tolerated(0.06) benign(0.034) TCGA-D3-A8GM-06 7 44733579 44733579 C T OGDH Silent p.F497F 0.38 TCGA-D3-A8GM-06 7 44735724 44735724 C T OGDH Missense_Mutation p.P590L 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A8GM-06 7 44741180 44741180 C T OGDH Silent p.P866P 0.32 TCGA-D3-A8GM-06 7 45015116 45015116 G A MYO1G Silent p.I177I 0.35 TCGA-D3-A8GM-06 7 45753465 45753465 T A ADCY1 Missense_Mutation p.F1077L 0.24 tolerated_low_confidence(0.3) benign(0.007) TCGA-D3-A8GM-06 7 47970821 47970821 G A PKD1L1 Missense_Mutation p.T206M 0.18 tolerated(0.06) benign(0.002) TCGA-D3-A8GM-06 7 48015231 48015231 C A HUS1 Missense_Mutation p.M173I 0.27 deleterious(0.04) possibly_damaging(0.901) TCGA-D3-A8GM-06 7 48081042 48081042 C A C7orf57 Missense_Mutation p.P56H 0.46 tolerated(0.1) possibly_damaging(0.893) TCGA-D3-A8GM-06 7 50467675 50467675 G A IKZF1 Missense_Mutation p.E262K 0.28 deleterious(0) possibly_damaging(0.738) TCGA-D3-A8GM-06 7 5340124 5340124 C T SLC29A4 Silent p.F427F 0.25 TCGA-D3-A8GM-06 7 5363919 5363919 G A TNRC18 Missense_Mutation p.P2123L 0.26 possibly_damaging(0.713) TCGA-D3-A8GM-06 7 54617574 54617574 C T VSTM2A Silent p.S115S 0.30 TCGA-D3-A8GM-06 7 55238213 55238213 C T EGFR Intron 0.28 TCGA-D3-A8GM-06 7 5567190 5567190 G A ACTB 3'UTR 0.40 TCGA-D3-A8GM-06 7 55863544 55863544 G A SEPT14 3'UTR 0.24 TCGA-D3-A8GM-06 7 56006977 56006977 A - ZNF713 Frame_Shift_Del p.I192Yfs*3 0.17 TCGA-D3-A8GM-06 7 56045850 56045850 G A GBAS Missense_Mutation p.E42K 0.27 tolerated(0.09) benign(0.02) TCGA-D3-A8GM-06 7 56123363 56123363 A - CCT6A Frame_Shift_Del p.K129Rfs*11 0.10 TCGA-D3-A8GM-06 7 56155386 56155386 C T PHKG1 Missense_Mutation p.G56E 0.15 tolerated(1) possibly_damaging(0.543) TCGA-D3-A8GM-06 7 56155467 56155467 C T PHKG1 Missense_Mutation p.G29D 0.40 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 7 56172126 56172126 G C CHCHD2 Silent p.V31V 0.35 TCGA-D3-A8GM-06 7 56174180 56174180 G A CHCHD2 5'UTR 0.40 TCGA-D3-A8GM-06 7 5925830 5925830 C T OCM 3'UTR 0.26 TCGA-D3-A8GM-06 7 5983047 5983047 A G RSPH10B Missense_Mutation p.C556R 0.08 deleterious(0) probably_damaging(0.937) TCGA-D3-A8GM-06 7 6205246 6205246 T A CYTH3 Missense_Mutation p.D301V 0.28 deleterious(0.01) benign(0.326) TCGA-D3-A8GM-06 7 62752007 62752007 G A ZNF733P RNA 0.16 TCGA-D3-A8GM-06 7 6370586 6370586 T G FAM220A Missense_Mutation p.K67T 0.13 tolerated(0.08) benign(0.298) TCGA-D3-A8GM-06 7 63726883 63726883 C T ZNF679 Missense_Mutation p.T291I 0.36 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 7 65154304 65154304 C T INTS4L2 RNA 0.27 TCGA-D3-A8GM-06 7 65842486 65842486 C T LINC00174 RNA 0.40 TCGA-D3-A8GM-06 7 6628249 6628249 A G ZDHHC4 Missense_Mutation p.Y248C 0.33 deleterious(0.01) benign(0.126) TCGA-D3-A8GM-06 7 66482951 66482951 G A TYW1 Missense_Mutation p.D228N 0.37 tolerated(0.08) possibly_damaging(0.449) TCGA-D3-A8GM-06 7 70800643 70800643 G A WBSCR17 Missense_Mutation p.E116K 0.34 tolerated(0.18) benign(0.355) TCGA-D3-A8GM-06 7 71743732 71743732 T A CALN1 Silent p.R61R 0.26 TCGA-D3-A8GM-06 7 72430569 72430569 G A TRIM74 Missense_Mutation p.H237Y 0.26 tolerated(0.06) benign(0.003) TCGA-D3-A8GM-06 7 72745747 72745747 C T FKBP6 Missense_Mutation p.R186C 0.28 tolerated(0.13) benign(0.082) TCGA-D3-A8GM-06 7 73013896 73013896 G A MLXIPL Missense_Mutation p.S344F 0.43 deleterious(0.04) benign(0.288) TCGA-D3-A8GM-06 7 73602004 73602004 C A EIF4H Silent p.P41P 0.12 TCGA-D3-A8GM-06 7 73790614 73790614 T G CLIP2 Missense_Mutation p.L628R 0.14 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GM-06 7 73790715 73790715 C G CLIP2 Missense_Mutation p.L662V 0.20 tolerated(0.4) probably_damaging(0.998) TCGA-D3-A8GM-06 7 7557453 7557453 C T COL28A1 Missense_Mutation p.G277R 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 75894771 75894771 C T SRRM3 Missense_Mutation p.S272F 0.24 tolerated(0.19) unknown(0) TCGA-D3-A8GM-06 7 76024632 76024632 G A SRCRB4D Missense_Mutation p.T295M 0.31 deleterious(0.04) benign(0.069) TCGA-D3-A8GM-06 7 76131744 76131744 C T DTX2 Missense_Mutation p.L454F 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-D3-A8GM-06 7 77797373 77797373 A C MAGI2 Missense_Mutation p.L819R 0.32 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GM-06 7 77885818 77885818 G A MAGI2 Missense_Mutation p.P497S 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 7 77975261 77975261 G T MAGI2 Silent p.P401P 0.24 TCGA-D3-A8GM-06 7 80302092 80302092 G A CD36 Missense_Mutation p.G378R 0.25 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 7 81600044 81600044 C T CACNA2D1 Silent p.V717V 0.26 TCGA-D3-A8GM-06 7 81624186 81624186 C T CACNA2D1 Missense_Mutation p.E578K 0.32 tolerated(0.05) benign(0.373) TCGA-D3-A8GM-06 7 82390732 82390732 C T PCLO Missense_Mutation p.E5029K 0.45 unknown(0) TCGA-D3-A8GM-06 7 82544181 82544181 G A PCLO Missense_Mutation p.A4374V 0.10 unknown(0) TCGA-D3-A8GM-06 7 82544367 82544367 G A PCLO Missense_Mutation p.S4312F 0.18 unknown(0) TCGA-D3-A8GM-06 7 82579064 82579064 G A PCLO Missense_Mutation p.P3614S 0.30 unknown(0) TCGA-D3-A8GM-06 7 82579734 82579734 G A PCLO Silent p.I3390I 0.28 TCGA-D3-A8GM-06 7 82583586 82583586 G A PCLO Missense_Mutation p.S2228L 0.33 unknown(0) TCGA-D3-A8GM-06 7 82584223 82584223 C T PCLO Missense_Mutation p.E2016K 0.36 unknown(0) TCGA-D3-A8GM-06 7 82764885 82764885 G A PCLO Silent p.L661L 0.25 TCGA-D3-A8GM-06 7 82764922 82764922 C T PCLO Silent p.G648G 0.33 TCGA-D3-A8GM-06 7 82784537 82784537 G T PCLO Missense_Mutation p.P474T 0.13 possibly_damaging(0.803) TCGA-D3-A8GM-06 7 82784910 82784910 C T PCLO Silent p.V349V 0.24 TCGA-D3-A8GM-06 7 83029484 83029484 G A SEMA3E Missense_Mutation p.P409L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 83592531 83592531 C T SEMA3A Missense_Mutation p.R617Q 0.26 tolerated(0.57) benign(0.003) TCGA-D3-A8GM-06 7 84697600 84697600 C T SEMA3D Missense_Mutation p.D166N 0.36 deleterious(0.02) benign(0.072) TCGA-D3-A8GM-06 7 86394606 86394606 G A GRM3 Missense_Mutation p.E49K 0.23 tolerated(0.22) possibly_damaging(0.731) TCGA-D3-A8GM-06 7 86468442 86468442 G A GRM3 Missense_Mutation p.E538K 0.32 deleterious(0.04) probably_damaging(0.946) TCGA-D3-A8GM-06 7 87145866 87145866 T - ABCB1 Frame_Shift_Del p.T1015Pfs*3 0.19 TCGA-D3-A8GM-06 7 87537351 87537351 G A DBF4 Missense_Mutation p.G633D 0.20 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 7 87537566 87537566 T C DBF4 3'UTR 0.45 TCGA-D3-A8GM-06 7 87760750 87760750 C T ADAM22 Missense_Mutation p.S331L 0.28 deleterious(0.01) possibly_damaging(0.798) TCGA-D3-A8GM-06 7 87762258 87762258 G A ADAM22 Missense_Mutation p.V357M 0.38 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GM-06 7 87782571 87782571 C T ADAM22 Silent p.L573L 0.26 TCGA-D3-A8GM-06 7 87835817 87835817 G A SRI Silent p.F191F 0.30 TCGA-D3-A8GM-06 7 88964718 88964719 - A ZNF804B Frame_Shift_Ins p.L810Tfs*20 0.22 TCGA-D3-A8GM-06 7 892253 892253 C T SUN1 Nonsense_Mutation p.R287* 0.23 TCGA-D3-A8GM-06 7 89917567 89917567 G A C7orf63 Missense_Mutation p.G559E 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 7 89939461 89939461 C T C7orf63 Missense_Mutation p.A912V 0.26 deleterious(0) possibly_damaging(0.84) TCGA-D3-A8GM-06 7 91632195 91632195 A G AKAP9 Silent p.E988E 0.21 TCGA-D3-A8GM-06 7 91844054 91844054 T C KRIT1 Missense_Mutation p.E534G 0.35 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GM-06 7 92099166 92099166 T G ERVW-1 Missense_Mutation p.E177A 0.22 tolerated(0.72) benign(0.145) TCGA-D3-A8GM-06 7 92826826 92826826 G A HEPACAM2 Silent p.F370F 0.16 TCGA-D3-A8GM-06 7 93098065 93098065 G A CALCR Silent p.F179F 0.26 TCGA-D3-A8GM-06 7 93108698 93108698 C T CALCR Missense_Mutation p.R76Q 0.26 tolerated(0.05) benign(0.232) TCGA-D3-A8GM-06 7 94024318 94024318 G T COL1A2 5'UTR 0.44 TCGA-D3-A8GM-06 7 94038690 94038690 T C COL1A2 Silent p.G283G 0.21 TCGA-D3-A8GM-06 7 94056335 94056335 C T COL1A2 Nonsense_Mutation p.Q1041* 0.15 TCGA-D3-A8GM-06 7 94057765 94057765 A T COL1A2 Silent p.G1229G 0.27 TCGA-D3-A8GM-06 7 94228250 94228250 T C SGCE Missense_Mutation p.I364V 0.12 tolerated(0.06) benign(0.387) TCGA-D3-A8GM-06 7 94293246 94293246 C T PEG10 Silent p.T126T 0.36 TCGA-D3-A8GM-06 7 94540021 94540021 C T PPP1R9A Missense_Mutation p.S199F 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 7 94540540 94540540 C T PPP1R9A Missense_Mutation p.P372L 0.40 tolerated(0.07) benign(0.059) TCGA-D3-A8GM-06 7 94953765 94953765 G A PON1 Missense_Mutation p.T8I 0.28 tolerated(0.09) benign(0.044) TCGA-D3-A8GM-06 7 95001638 95001638 G A PON3 Missense_Mutation p.P72S 0.32 deleterious(0) possibly_damaging(0.619) TCGA-D3-A8GM-06 7 95034771 95034771 C T PON2 Silent p.E312E 0.31 TCGA-D3-A8GM-06 7 98254436 98254436 C T NPTX2 Silent p.I282I 0.24 TCGA-D3-A8GM-06 7 98507697 98507697 C T TRRAP Missense_Mutation p.H457Y 0.21 benign(0.152) TCGA-D3-A8GM-06 7 98957282 98957282 C T ARPC1A Missense_Mutation p.R302C 0.32 tolerated(0.06) benign(0.004) TCGA-D3-A8GM-06 7 99161632 99161632 C T ZNF655 Intron 0.28 TCGA-D3-A8GM-06 7 99260457 99260457 C T CYP3A5 Missense_Mutation p.E283K 0.20 tolerated(0.12) benign(0.012) TCGA-D3-A8GM-06 7 99306688 99306688 C T CYP3A7 Nonsense_Mutation p.W408* 0.30 TCGA-D3-A8GM-06 7 99355843 99355843 C T CYP3A4 Silent p.L475L 0.27 TCGA-D3-A8GM-06 7 99463604 99463604 G A CYP3A43 Missense_Mutation p.G499R 0.37 tolerated(0.11) benign(0.043) TCGA-D3-A8GM-06 7 99702518 99702518 G A AP4M1 Missense_Mutation p.V210M 0.18 deleterious(0) probably_damaging(0.936) TCGA-D3-A8GM-06 7 99957038 99957038 A T PILRB Missense_Mutation p.H178L 0.24 tolerated(0.19) benign(0.037) TCGA-D3-A8GM-06 7 99957039 99957039 C T PILRB Silent p.H178H 0.24 TCGA-D3-A8GM-06 7 99987694 99987694 G A PILRA Missense_Mutation p.G213E 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 8 104413815 104413815 G A SLC25A32 Silent p.V247V 0.34 TCGA-D3-A8GM-06 8 10469463 10469463 G A RP1L1 Silent p.A715A 0.31 TCGA-D3-A8GM-06 8 104897581 104897581 G A RIMS2 Missense_Mutation p.E252K 0.15 tolerated_low_confidence(0.23) benign(0.015) TCGA-D3-A8GM-06 8 105260926 105260926 C T RIMS2 Intron 0.46 TCGA-D3-A8GM-06 8 105263842 105263842 G A RIMS2 Missense_Mutation p.G1282R 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GM-06 8 105263843 105263843 G A RIMS2 Missense_Mutation p.G1282E 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GM-06 8 10583214 10583214 G A SOX7 3'UTR 0.36 TCGA-D3-A8GM-06 8 107752590 107752590 C T OXR1 Missense_Mutation p.P729L 0.18 deleterious(0) possibly_damaging(0.908) TCGA-D3-A8GM-06 8 107782305 107782305 A T ABRA Missense_Mutation p.N38K 0.43 tolerated(0.14) benign(0.389) TCGA-D3-A8GM-06 8 108264107 108264107 C T ANGPT1 Missense_Mutation p.M491I 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GM-06 8 108296969 108296969 C T ANGPT1 Silent p.G382G 0.36 TCGA-D3-A8GM-06 8 110408282 110408282 G A PKHD1L1 Missense_Mutation p.G280R 0.40 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 8 110448566 110448566 G T PKHD1L1 Splice_Site p.X1169_splice 0.19 TCGA-D3-A8GM-06 8 110487470 110487470 C T PKHD1L1 Missense_Mutation p.S2910L 0.20 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GM-06 8 113267561 113267561 G A CSMD3 Missense_Mutation p.P3320S 0.32 tolerated(0.1) benign(0.16) TCGA-D3-A8GM-06 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.23 TCGA-D3-A8GM-06 8 113303897 113303897 G A CSMD3 Missense_Mutation p.P2939L 0.19 tolerated(0.35) benign(0.222) TCGA-D3-A8GM-06 8 113308070 113308070 G A CSMD3 Missense_Mutation p.S2869F 0.20 tolerated(0.43) possibly_damaging(0.756) TCGA-D3-A8GM-06 8 113317004 113317004 C T CSMD3 Missense_Mutation p.E2738K 0.32 tolerated(0.31) possibly_damaging(0.557) TCGA-D3-A8GM-06 8 113516179 113516179 G A CSMD3 Silent p.F1641F 0.18 TCGA-D3-A8GM-06 8 113933938 113933938 G A CSMD3 Silent p.V517V 0.41 TCGA-D3-A8GM-06 8 114111165 114111165 C T CSMD3 Missense_Mutation p.R246K 0.33 tolerated(0.11) probably_damaging(0.972) TCGA-D3-A8GM-06 8 114186078 114186078 G A CSMD3 Silent p.F194F 0.25 TCGA-D3-A8GM-06 8 116617158 116617158 G A TRPS1 Silent p.F346F 0.38 TCGA-D3-A8GM-06 8 11679263 11679263 C T FDFT1 Missense_Mutation p.S129F 0.13 deleterious(0) probably_damaging(0.925) TCGA-D3-A8GM-06 8 119936713 119936713 A G TNFRSF11B Missense_Mutation p.I369T 0.35 tolerated(0.2) benign(0.046) TCGA-D3-A8GM-06 8 12043982 12043982 T C FAM86B1 Silent p.S173S 0.26 TCGA-D3-A8GM-06 8 120977474 120977474 T G DEPTOR Missense_Mutation p.L143R 0.19 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GM-06 8 121354670 121354670 G A COL14A1 Missense_Mutation p.E1625K 0.26 deleterious(0) possibly_damaging(0.466) TCGA-D3-A8GM-06 8 121379437 121379437 G A COL14A1 Missense_Mutation p.G1702E 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 124206355 124206355 C T FAM83A Missense_Mutation p.S247L 0.47 tolerated(0.42) possibly_damaging(0.67) TCGA-D3-A8GM-06 8 124253610 124253610 G A C8orf76 5'UTR 0.57 TCGA-D3-A8GM-06 8 125131140 125131140 C T FER1L6 Missense_Mutation p.P1782L 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 125551345 125551345 C T TATDN1 5'Flank 0.13 TCGA-D3-A8GM-06 8 125565403 125565403 G A MTSS1 Missense_Mutation p.R700W 0.36 deleterious(0.01) possibly_damaging(0.677) TCGA-D3-A8GM-06 8 125580718 125580718 G A MTSS1 Missense_Mutation p.L174F 0.33 deleterious(0) benign(0.215) TCGA-D3-A8GM-06 8 130765061 130765061 C T GSDMC Missense_Mutation p.E243K 0.16 tolerated(0.89) benign(0) TCGA-D3-A8GM-06 8 131833653 131833653 T A ADCY8 Missense_Mutation p.T897S 0.12 tolerated(0.66) possibly_damaging(0.874) TCGA-D3-A8GM-06 8 131896826 131896826 G A ADCY8 Missense_Mutation p.S698F 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-D3-A8GM-06 8 133044151 133044151 G A OC90 Silent p.G336G 0.46 TCGA-D3-A8GM-06 8 133182591 133182591 G A KCNQ3 Missense_Mutation p.P409S 0.23 tolerated(0.11) benign(0.309) TCGA-D3-A8GM-06 8 133182646 133182646 G A KCNQ3 Silent p.P390P 0.16 TCGA-D3-A8GM-06 8 133196544 133196544 C T KCNQ3 Missense_Mutation p.R183Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 8 13356737 13356737 G A DLC1 Missense_Mutation p.P282S 0.35 tolerated_low_confidence(0.53) benign(0.004) TCGA-D3-A8GM-06 8 133740113 133740113 G A TMEM71 Missense_Mutation p.H184Y 0.41 tolerated(1) benign(0.005) TCGA-D3-A8GM-06 8 133740114 133740114 G A TMEM71 Silent p.S183S 0.40 TCGA-D3-A8GM-06 8 135649870 135649870 G A ZFAT Silent p.I94I 0.16 TCGA-D3-A8GM-06 8 139144881 139144881 G A FAM135B Silent p.F1392F 0.17 TCGA-D3-A8GM-06 8 139163542 139163542 G A FAM135B Missense_Mutation p.S1059F 0.47 deleterious(0) possibly_damaging(0.643) TCGA-D3-A8GM-06 8 139163734 139163734 G A FAM135B Missense_Mutation p.S995F 0.16 tolerated(0.23) benign(0.013) TCGA-D3-A8GM-06 8 139164046 139164046 G A FAM135B Missense_Mutation p.P891L 0.45 deleterious_low_confidence(0.01) benign(0.073) TCGA-D3-A8GM-06 8 139277944 139277944 A G FAM135B Splice_Site p.X99_splice 0.19 TCGA-D3-A8GM-06 8 139603671 139603671 G A COL22A1 Silent p.I1563I 0.19 TCGA-D3-A8GM-06 8 139715569 139715569 G A COL22A1 Missense_Mutation p.P847S 0.28 probably_damaging(0.947) TCGA-D3-A8GM-06 8 139715590 139715590 C A COL22A1 Missense_Mutation p.G840C 0.12 probably_damaging(0.999) TCGA-D3-A8GM-06 8 140922421 140922421 G A TRAPPC9 Silent p.I1076I 0.34 TCGA-D3-A8GM-06 8 141874482 141874482 G A PTK2 Missense_Mutation p.R127C 0.11 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 8 142490064 142490064 C T MROH5 3'UTR 0.19 TCGA-D3-A8GM-06 8 143412272 143412272 G A TSNARE1 Missense_Mutation p.R295W 0.41 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 8 143618411 143618411 G A BAI1 Missense_Mutation p.G1212S 0.33 tolerated(0.38) benign(0.417) TCGA-D3-A8GM-06 8 143846021 143846021 C T LYNX1 3'UTR 0.11 TCGA-D3-A8GM-06 8 143956537 143956537 G A CYP11B1 Missense_Mutation p.R412C 0.34 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 8 143957285 143957285 G A CYP11B1 Missense_Mutation p.P322S 0.09 tolerated(0.14) possibly_damaging(0.654) TCGA-D3-A8GM-06 8 144941656 144941656 G A EPPK1 Silent p.I1922I 0.29 TCGA-D3-A8GM-06 8 144942386 144942386 C T EPPK1 Missense_Mutation p.R1679H 0.18 probably_damaging(0.999) TCGA-D3-A8GM-06 8 144991371 144991371 A G PLEC Silent p.D4343D 0.18 TCGA-D3-A8GM-06 8 144991596 144991596 G A PLEC Silent p.S4268S 0.40 TCGA-D3-A8GM-06 8 144995674 144995674 C T PLEC Missense_Mutation p.R2909H 0.16 probably_damaging(0.949) TCGA-D3-A8GM-06 8 145134983 145134983 C T EXOSC4 Silent p.L103L 0.40 TCGA-D3-A8GM-06 8 145580134 145580134 G A FBXL6 Missense_Mutation p.P351S 0.32 tolerated(1) benign(0.014) TCGA-D3-A8GM-06 8 145649611 145649611 C T VPS28 Missense_Mutation p.R148H 0.19 deleterious(0.02) benign(0.263) TCGA-D3-A8GM-06 8 146067864 146067864 C T ZNF7 Missense_Mutation p.R458C 0.13 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A8GM-06 8 15967520 15967520 G A MSR1 3'UTR 0.33 TCGA-D3-A8GM-06 8 16012585 16012585 G A MSR1 Missense_Mutation p.P296S 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GM-06 8 16026281 16026281 C T MSR1 Missense_Mutation p.E106K 0.42 tolerated(0.23) benign(0.045) TCGA-D3-A8GM-06 8 16850662 16850662 C T FGF20 Silent p.Q185Q 0.34 TCGA-D3-A8GM-06 8 17570759 17570759 G A MTUS1 Missense_Mutation p.P863S 0.16 tolerated(0.14) benign(0.034) TCGA-D3-A8GM-06 8 20003318 20003318 G A SLC18A1 Missense_Mutation p.P512S 0.42 tolerated(0.06) probably_damaging(0.963) TCGA-D3-A8GM-06 8 21938904 21938904 C T DMTN Missense_Mutation p.S383F 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-D3-A8GM-06 8 22006032 22006032 G A LGI3 Missense_Mutation p.R430C 0.19 deleterious(0) possibly_damaging(0.744) TCGA-D3-A8GM-06 8 22140695 22140695 C T PIWIL2 Nonsense_Mutation p.Q192* 0.29 TCGA-D3-A8GM-06 8 22428599 22428599 C T SORBS3 Silent p.A536A 0.26 TCGA-D3-A8GM-06 8 22452082 22452082 G T PDLIM2 3'Flank 0.35 TCGA-D3-A8GM-06 8 22938910 22938910 A T RP11-875O11.2 RNA 0.26 TCGA-D3-A8GM-06 8 23002140 23002140 G A TNFRSF10D Silent p.F259F 0.19 TCGA-D3-A8GM-06 8 23190942 23190942 G A LOXL2 Missense_Mutation p.S313L 0.18 tolerated(0.16) benign(0.01) TCGA-D3-A8GM-06 8 24151640 24151640 C T ADAM28 5'UTR 0.40 TCGA-D3-A8GM-06 8 24168917 24168917 C T ADAM28 Missense_Mutation p.S117F 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 24181418 24181418 G A ADAM28 Silent p.K264K 0.12 TCGA-D3-A8GM-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.21 TCGA-D3-A8GM-06 8 24256534 24256534 G A ADAMDEC1 Missense_Mutation p.D304N 0.18 tolerated(0.09) benign(0.208) TCGA-D3-A8GM-06 8 24344734 24344734 G A ADAM7 Missense_Mutation p.R332K 0.23 tolerated(0.94) benign(0.217) TCGA-D3-A8GM-06 8 24349455 24349455 G A ADAM7 Missense_Mutation p.E466K 0.26 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GM-06 8 24366162 24366162 G A ADAM7 3'UTR 0.23 TCGA-D3-A8GM-06 8 24366171 24366171 C T ADAM7 3'UTR 0.22 TCGA-D3-A8GM-06 8 24775214 24775214 C T NEFM Missense_Mutation p.P616S 0.35 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GM-06 8 25708118 25708118 C T EBF2 Missense_Mutation p.G563E 0.23 deleterious_low_confidence(0) benign(0.188) TCGA-D3-A8GM-06 8 26435758 26435758 T A DPYSL2 5'UTR 0.23 TCGA-D3-A8GM-06 8 26627682 26627682 T A ADRA1A Intron 0.22 TCGA-D3-A8GM-06 8 27156013 27156013 G A TRIM35 Missense_Mutation p.R167C 0.17 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GM-06 8 27320856 27320856 C T CHRNA2 Silent p.G368G 0.33 TCGA-D3-A8GM-06 8 27516386 27516386 G A SCARA3 Nonsense_Mutation p.W233* 0.14 TCGA-D3-A8GM-06 8 27903060 27903060 G A NUGGC Missense_Mutation p.S477F 0.21 deleterious(0.01) benign(0.219) TCGA-D3-A8GM-06 8 28209101 28209101 G A ZNF395 Missense_Mutation p.P382S 0.36 tolerated(0.16) benign(0.069) TCGA-D3-A8GM-06 8 2886895 2886895 G A CSMD1 Missense_Mutation p.R2601W 0.17 possibly_damaging(0.54) TCGA-D3-A8GM-06 8 30210699 30210699 G A TUBBP1 RNA 0.15 TCGA-D3-A8GM-06 8 30701631 30701631 C T TEX15 Missense_Mutation p.E1635K 0.13 deleterious(0.04) benign(0.414) TCGA-D3-A8GM-06 8 30702900 30702900 G A TEX15 Missense_Mutation p.H1212Y 0.38 tolerated(0.42) benign(0.122) TCGA-D3-A8GM-06 8 30702972 30702972 C T TEX15 Missense_Mutation p.E1188K 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-D3-A8GM-06 8 30924586 30924586 T C WRN Missense_Mutation p.V181A 0.46 deleterious(0.01) probably_damaging(0.924) TCGA-D3-A8GM-06 8 3165304 3165304 C T CSMD1 Missense_Mutation p.R1288Q 0.45 probably_damaging(0.976) TCGA-D3-A8GM-06 8 3205650 3205650 C T CSMD1 Missense_Mutation p.G1113E 0.40 probably_damaging(1) TCGA-D3-A8GM-06 8 3216800 3216800 G A CSMD1 Missense_Mutation p.H1060Y 0.21 benign(0.002) TCGA-D3-A8GM-06 8 35606100 35606100 C T UNC5D Missense_Mutation p.P608S 0.41 tolerated(0.17) benign(0.042) TCGA-D3-A8GM-06 8 36642067 36642067 C T KCNU1 Silent p.L47L 0.27 TCGA-D3-A8GM-06 8 37688941 37688941 T C GPR124 Silent p.S311S 0.09 TCGA-D3-A8GM-06 8 37791843 37791843 C T GOT1L1 Missense_Mutation p.E412K 0.18 tolerated_low_confidence(0.32) benign(0) TCGA-D3-A8GM-06 8 37978607 37978607 C T ASH2L Missense_Mutation p.P369S 0.19 deleterious(0) possibly_damaging(0.84) TCGA-D3-A8GM-06 8 38273574 38273574 G A FGFR1 Silent p.P587P 0.33 TCGA-D3-A8GM-06 8 38273575 38273575 G A FGFR1 Missense_Mutation p.P587L 0.40 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 8 38913194 38913194 T C ADAM9 Silent p.F498F 0.46 TCGA-D3-A8GM-06 8 39535031 39535031 C T ADAM18 Missense_Mutation p.S536L 0.28 tolerated(0.21) benign(0.046) TCGA-D3-A8GM-06 8 39646220 39646220 T C ADAM2 Missense_Mutation p.K204E 0.37 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 8 39782275 39782275 C T IDO1 Missense_Mutation p.R231C 0.18 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 8 39785404 39785404 G A IDO1 Silent p.R304R 0.50 TCGA-D3-A8GM-06 8 39785603 39785603 C T IDO1 Missense_Mutation p.P371S 0.45 tolerated(0.11) benign(0.046) TCGA-D3-A8GM-06 8 39806769 39806769 C T IDO2 Missense_Mutation p.L42F 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GM-06 8 41547858 41547858 C T ANK1 Missense_Mutation p.D1372N 0.13 deleterious(0.01) possibly_damaging(0.837) TCGA-D3-A8GM-06 8 41548011 41548011 C T ANK1 Missense_Mutation p.R1363H 0.15 deleterious(0) benign(0.019) TCGA-D3-A8GM-06 8 41552296 41552296 C T ANK1 Silent p.E1088E 0.46 TCGA-D3-A8GM-06 8 41572554 41572554 C T ANK1 Silent p.G580G 0.52 TCGA-D3-A8GM-06 8 41580711 41580711 G A ANK1 Nonsense_Mutation p.R314* 0.19 TCGA-D3-A8GM-06 8 41794891 41794891 G A KAT6A Missense_Mutation p.L1079F 0.19 benign(0.145) TCGA-D3-A8GM-06 8 41794892 41794892 T A KAT6A Missense_Mutation p.E1078D 0.19 possibly_damaging(0.791) TCGA-D3-A8GM-06 8 42587022 42587022 A T CHRNB3 Missense_Mutation p.D191V 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 42587127 42587127 C T CHRNB3 Missense_Mutation p.S226F 0.21 tolerated(0.17) probably_damaging(0.979) TCGA-D3-A8GM-06 8 42977592 42977592 C T POMK Missense_Mutation p.P209S 0.31 tolerated(0.67) benign(0.029) TCGA-D3-A8GM-06 8 42977593 42977593 C T POMK Missense_Mutation p.P209L 0.35 tolerated(0.3) benign(0.196) TCGA-D3-A8GM-06 8 43197399 43197399 G A POTEA RNA 0.34 TCGA-D3-A8GM-06 8 48744474 48744474 C T PRKDC Silent p.R2721R 0.32 TCGA-D3-A8GM-06 8 48839792 48839792 G A PRKDC Missense_Mutation p.P794L 0.40 probably_damaging(0.997) TCGA-D3-A8GM-06 8 48883926 48883926 C T MCM4 Missense_Mutation p.A609V 0.15 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 8 52232407 52232407 C T PXDNL 3'UTR 0.32 TCGA-D3-A8GM-06 8 53569233 53569233 A C RB1CC1 Missense_Mutation p.D1052E 0.28 tolerated_low_confidence(1) benign(0.036) TCGA-D3-A8GM-06 8 55538490 55538490 C T RP1 Missense_Mutation p.S683F 0.15 tolerated(0.12) benign(0.287) TCGA-D3-A8GM-06 8 55539788 55539788 C T RP1 Missense_Mutation p.P1116S 0.18 tolerated(0.92) benign(0.004) TCGA-D3-A8GM-06 8 55540538 55540538 G A RP1 Missense_Mutation p.D1366N 0.21 tolerated(0.55) benign(0.015) TCGA-D3-A8GM-06 8 56436473 56436473 G C XKR4 Missense_Mutation p.R547P 0.16 deleterious(0.05) probably_damaging(0.995) TCGA-D3-A8GM-06 8 56863044 56863044 C T LYN Missense_Mutation p.S104F 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 57353923 57353923 C A PENK Missense_Mutation p.A238S 0.42 tolerated(0.23) benign(0.02) TCGA-D3-A8GM-06 8 57354488 57354488 T C PENK Silent p.V49V 0.32 TCGA-D3-A8GM-06 8 61121413 61121413 C T CA8 Silent p.G268G 0.48 TCGA-D3-A8GM-06 8 62212635 62212635 G A CLVS1 Silent p.R83R 0.27 TCGA-D3-A8GM-06 8 63902769 63902769 T A NKAIN3 Missense_Mutation p.M192K 0.38 tolerated_low_confidence(0.47) benign(0) TCGA-D3-A8GM-06 8 65528792 65528792 C T CYP7B1 Silent p.V102V 0.11 TCGA-D3-A8GM-06 8 67062619 67062619 A G TRIM55 Silent p.E301E 0.40 TCGA-D3-A8GM-06 8 6873614 6873614 C T DEFA3 Silent p.R61R 0.60 TCGA-D3-A8GM-06 8 69005959 69005959 T C PREX2 Splice_Site p.X790_splice 0.39 TCGA-D3-A8GM-06 8 69020372 69020372 G A PREX2 Nonsense_Mutation p.W915* 0.21 TCGA-D3-A8GM-06 8 69136834 69136834 G A PREX2 Missense_Mutation p.R1583K 0.31 tolerated(0.65) probably_damaging(0.952) TCGA-D3-A8GM-06 8 69400270 69400270 C T C8orf34 Missense_Mutation p.S250L 0.16 tolerated(0.05) possibly_damaging(0.903) TCGA-D3-A8GM-06 8 70539483 70539483 G A SULF1 Missense_Mutation p.R630K 0.39 tolerated(0.92) benign(0.065) TCGA-D3-A8GM-06 8 70980758 70980758 G A PRDM14 Missense_Mutation p.S237F 0.44 deleterious(0.01) possibly_damaging(0.603) TCGA-D3-A8GM-06 8 72111635 72111635 C T EYA1 Silent p.R573R 0.33 TCGA-D3-A8GM-06 8 77616854 77616854 T G ZFHX4 Missense_Mutation p.S177R 0.12 benign(0.011) TCGA-D3-A8GM-06 8 77617554 77617554 C T ZFHX4 Silent p.L411L 0.36 TCGA-D3-A8GM-06 8 77765752 77765752 C T ZFHX4 Missense_Mutation p.P2199S 0.38 possibly_damaging(0.906) TCGA-D3-A8GM-06 8 81431632 81431632 C T ZBTB10 Missense_Mutation p.P829S 0.30 tolerated(0.07) benign(0.216) TCGA-D3-A8GM-06 8 86041442 86041442 C T LRRCC1 Missense_Mutation p.S485F 0.34 deleterious(0.02) benign(0.308) TCGA-D3-A8GM-06 8 86126763 86126763 C T C8orf59 3'UTR 0.34 TCGA-D3-A8GM-06 8 86242073 86242073 C T CA1 Missense_Mutation p.G172S 0.31 deleterious(0) possibly_damaging(0.808) TCGA-D3-A8GM-06 8 86242074 86242074 C A CA1 Splice_Site p.X172_splice 0.31 TCGA-D3-A8GM-06 8 87638256 87638256 G A CNGB3 Silent p.A511A 0.36 TCGA-D3-A8GM-06 8 88885715 88885715 G A DCAF4L2 Missense_Mutation p.S162L 0.42 tolerated(0.06) probably_damaging(0.932) TCGA-D3-A8GM-06 8 94748034 94748034 G T RBM12B Missense_Mutation p.A202D 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 8 95143165 95143165 G A CDH17 Silent p.V741V 0.42 TCGA-D3-A8GM-06 8 95411700 95411700 G A RAD54B Silent p.A440A 0.20 TCGA-D3-A8GM-06 8 95503884 95503884 C A KIAA1429 Missense_Mutation p.G1688C 0.07 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 8 95531387 95531387 C T KIAA1429 Missense_Mutation p.R780H 0.20 tolerated(0.07) benign(0.003) TCGA-D3-A8GM-06 8 9599214 9599214 A T TNKS Intron 0.42 TCGA-D3-A8GM-06 8 9599215 9599215 C T TNKS Intron 0.43 TCGA-D3-A8GM-06 9 100082483 100082483 G T CCDC180 Missense_Mutation p.E429D 0.08 tolerated(0.39) benign(0.059) TCGA-D3-A8GM-06 9 100126319 100126319 C - CCDC180 Intron 0.25 TCGA-D3-A8GM-06 9 100449495 100449495 T C XPA Silent p.Q146Q 0.33 TCGA-D3-A8GM-06 9 101304256 101304256 G A GABBR2 Missense_Mutation p.P177S 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 101544817 101544817 G A ANKS6 Missense_Mutation p.A384V 0.40 deleterious(0) possibly_damaging(0.855) TCGA-D3-A8GM-06 9 102606932 102606932 A G NR4A3 Missense_Mutation p.Y430C 0.25 deleterious(0) benign(0.017) TCGA-D3-A8GM-06 9 104133717 104133717 C T BAAT 5'UTR 0.40 TCGA-D3-A8GM-06 9 104239094 104239094 C G TMEM246 Missense_Mutation p.W94S 0.31 tolerated(0.74) benign(0.001) TCGA-D3-A8GM-06 9 104356984 104356984 C T PPP3R2 Missense_Mutation p.E77K 0.22 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 9 104432447 104432447 C T GRIN3A Nonsense_Mutation p.W749* 0.19 TCGA-D3-A8GM-06 9 104449154 104449154 G A GRIN3A Missense_Mutation p.T343I 0.37 tolerated(0.16) benign(0.004) TCGA-D3-A8GM-06 9 1056781 1056781 G A DMRT2 Silent p.L398L 0.30 TCGA-D3-A8GM-06 9 107266730 107266730 C T OR13F1 Missense_Mutation p.L63F 0.34 deleterious(0.01) benign(0.085) TCGA-D3-A8GM-06 9 107332352 107332352 G A OR13C8 Missense_Mutation p.D302N 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GM-06 9 107361140 107361140 C T OR13C5 Missense_Mutation p.M185I 0.26 deleterious(0) benign(0.039) TCGA-D3-A8GM-06 9 107361185 107361185 C T OR13C5 Silent p.R170R 0.34 TCGA-D3-A8GM-06 9 107367878 107367878 C T OR13C2 Missense_Mutation p.E11K 0.36 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A8GM-06 9 107380251 107380251 G A OR13C9 Missense_Mutation p.P79S 0.30 deleterious(0.01) benign(0.099) TCGA-D3-A8GM-06 9 107457197 107457197 C T OR13D1 Silent p.S165S 0.27 TCGA-D3-A8GM-06 9 110064313 110064313 T C RAD23B Intron 0.30 TCGA-D3-A8GM-06 9 111617298 111617298 G A ACTL7B Missense_Mutation p.P305S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 9 111819505 111819505 G T TMEM245 Missense_Mutation p.S607Y 0.32 deleterious(0) possibly_damaging(0.736) TCGA-D3-A8GM-06 9 111979330 111979330 C T EPB41L4B Missense_Mutation p.G502E 0.26 deleterious(0.04) benign(0.287) TCGA-D3-A8GM-06 9 113169765 113169765 C T SVEP1 Nonsense_Mutation p.W2705* 0.38 TCGA-D3-A8GM-06 9 113194895 113194895 G A SVEP1 Missense_Mutation p.P1694S 0.35 probably_damaging(0.999) TCGA-D3-A8GM-06 9 113312377 113312377 A G SVEP1 Missense_Mutation p.L180P 0.25 probably_damaging(1) TCGA-D3-A8GM-06 9 113312379 113312379 A T SVEP1 Silent p.I179I 0.26 TCGA-D3-A8GM-06 9 113562957 113562957 C T MUSK Missense_Mutation p.R767C 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 113563219 113563219 G A MUSK Missense_Mutation p.R854Q 0.29 tolerated(0.17) probably_damaging(0.992) TCGA-D3-A8GM-06 9 113637992 113637992 G A LPAR1 Silent p.I268I 0.33 TCGA-D3-A8GM-06 9 113734363 113734363 G A LPAR1 Missense_Mutation p.S12L 0.29 tolerated_low_confidence(0.25) benign(0) TCGA-D3-A8GM-06 9 115652705 115652705 C T SLC46A2 Missense_Mutation p.G86D 0.35 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GM-06 9 115652717 115652717 T C SLC46A2 Missense_Mutation p.N82S 0.40 tolerated(0.06) benign(0.107) TCGA-D3-A8GM-06 9 116811684 116811684 T G ZNF618 Missense_Mutation p.L608R 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 117108209 117108209 C T AKNA Missense_Mutation p.D1199N 0.35 tolerated(0.07) benign(0.025) TCGA-D3-A8GM-06 9 117240954 117240954 G A DFNB31 Missense_Mutation p.P239L 0.45 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GM-06 9 117844083 117844083 C T TNC Missense_Mutation p.R791Q 0.39 deleterious(0.02) possibly_damaging(0.545) TCGA-D3-A8GM-06 9 117848984 117848984 C T TNC Silent p.G342G 0.34 TCGA-D3-A8GM-06 9 118950283 118950283 G A PAPPA Silent p.E422E 0.31 TCGA-D3-A8GM-06 9 119093563 119093563 C T PAPPA Missense_Mutation p.S1063F 0.31 tolerated(0.18) possibly_damaging(0.485) TCGA-D3-A8GM-06 9 119202937 119202937 C T ASTN2 Missense_Mutation p.E1194K 0.28 deleterious(0) unknown(0) TCGA-D3-A8GM-06 9 120476779 120476779 G A TLR4 Silent p.R791R 0.38 TCGA-D3-A8GM-06 9 121929303 121929303 C T BRINP1 3'UTR 0.32 TCGA-D3-A8GM-06 9 121971167 121971167 G A BRINP1 Silent p.I325I 0.30 TCGA-D3-A8GM-06 9 123216117 123216117 G A CDK5RAP2 Silent p.L804L 0.31 TCGA-D3-A8GM-06 9 123280868 123280868 A G CDK5RAP2 Missense_Mutation p.L383P 0.38 deleterious(0) possibly_damaging(0.766) TCGA-D3-A8GM-06 9 123858773 123858773 C T CNTRL Missense_Mutation p.P185S 0.27 probably_damaging(1) TCGA-D3-A8GM-06 9 124751505 124751505 G A TTLL11 Missense_Mutation p.P503L 0.32 deleterious(0.04) benign(0.039) TCGA-D3-A8GM-06 9 125240083 125240083 C T OR1J1 Silent p.G41G 0.28 TCGA-D3-A8GM-06 9 125288779 125288779 G A OR1N1 Missense_Mutation p.S265F 0.40 deleterious(0) probably_damaging(0.924) TCGA-D3-A8GM-06 9 125329996 125329996 C T OR1L8 Missense_Mutation p.G254E 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GM-06 9 125330363 125330363 G A OR1L8 Missense_Mutation p.H132Y 0.38 deleterious(0.02) benign(0.012) TCGA-D3-A8GM-06 9 125424116 125424116 G A OR1L1 Missense_Mutation p.G41E 0.29 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GM-06 9 125424229 125424229 C T OR1L1 Missense_Mutation p.P79S 0.25 deleterious(0.01) possibly_damaging(0.907) TCGA-D3-A8GM-06 9 125437574 125437574 C T OR1L3 Nonsense_Mutation p.Q56* 0.33 TCGA-D3-A8GM-06 9 125486393 125486393 G A OR1L4 Missense_Mutation p.G42E 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 125486394 125486394 G A OR1L4 Silent p.G42G 0.32 TCGA-D3-A8GM-06 9 125512383 125512383 T C OR1L6 Missense_Mutation p.F86S 0.27 tolerated(0.33) benign(0.006) TCGA-D3-A8GM-06 9 125681366 125681366 C T ZBTB26 Missense_Mutation p.R283H 0.34 tolerated(0.16) possibly_damaging(0.86) TCGA-D3-A8GM-06 9 127255377 127255377 A G NR5A1 Missense_Mutation p.F308L 0.16 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 9 128061370 128061370 G A GAPVD1 Missense_Mutation p.R57Q 0.18 tolerated(0.22) probably_damaging(0.996) TCGA-D3-A8GM-06 9 130269260 130269261 - G FAM129B Frame_Shift_Ins p.L702Pfs*44 0.10 TCGA-D3-A8GM-06 9 130482357 130482357 G A TTC16 Missense_Mutation p.G143R 0.43 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GM-06 9 130493546 130493546 C T TTC16 Silent p.S828S 0.30 TCGA-D3-A8GM-06 9 130700157 130700157 C T DPM2 5'UTR 0.31 TCGA-D3-A8GM-06 9 130913917 130913917 G A LCN2 Silent p.R92R 0.35 TCGA-D3-A8GM-06 9 130982594 130982594 C T DNM1 Missense_Mutation p.P275S 0.26 tolerated(0.07) benign(0.406) TCGA-D3-A8GM-06 9 131107452 131107452 G A SLC27A4 Silent p.L60L 0.32 TCGA-D3-A8GM-06 9 131112780 131112780 C T SLC27A4 Missense_Mutation p.A268V 0.32 deleterious(0.04) possibly_damaging(0.582) TCGA-D3-A8GM-06 9 131112781 131112781 C T SLC27A4 Silent p.A268A 0.32 TCGA-D3-A8GM-06 9 131133601 131133601 G A URM1 5'UTR 0.40 TCGA-D3-A8GM-06 9 131345060 131345060 C T SPTAN1 Missense_Mutation p.R580C 0.29 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GM-06 9 131517733 131517733 G A ZER1 Missense_Mutation p.P38S 0.29 tolerated(0.52) benign(0.01) TCGA-D3-A8GM-06 9 131670100 131670100 C T LRRC8A Silent p.I219I 0.34 TCGA-D3-A8GM-06 9 131804608 131804608 C T FAM73B Missense_Mutation p.T41M 0.38 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GM-06 9 131804612 131804612 A G FAM73B Silent p.P42P 0.39 TCGA-D3-A8GM-06 9 131870349 131870349 G A CRAT Missense_Mutation p.P12L 0.32 deleterious(0) benign(0.06) TCGA-D3-A8GM-06 9 131904814 131904814 C T PPP2R4 Missense_Mutation p.R293C 0.19 deleterious(0) probably_damaging(0.911) TCGA-D3-A8GM-06 9 131904865 131904865 C T PPP2R4 Intron 0.50 TCGA-D3-A8GM-06 9 133499022 133499022 C T FUBP3 Missense_Mutation p.A300V 0.28 tolerated(0.76) benign(0.002) TCGA-D3-A8GM-06 9 133578509 133578509 A C EXOSC2 Silent p.R248R 0.30 TCGA-D3-A8GM-06 9 133901673 133901673 G A LAMC3 Silent p.G125G 0.33 TCGA-D3-A8GM-06 9 134340300 134340300 G A PRRC2B Missense_Mutation p.E519K 0.38 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GM-06 9 134381806 134381806 C T POMT1 Silent p.F82F 0.24 TCGA-D3-A8GM-06 9 134612894 134612894 A G RAPGEF1 5'UTR 0.34 TCGA-D3-A8GM-06 9 135202247 135202247 G A SETX Missense_Mutation p.R1580C 0.32 tolerated(0.09) possibly_damaging(0.836) TCGA-D3-A8GM-06 9 135602912 135602912 G A AK8 Silent p.F377F 0.42 TCGA-D3-A8GM-06 9 135933515 135933515 T C GTF3C5 3'UTR 0.43 TCGA-D3-A8GM-06 9 136298817 136298817 A G ADAMTS13 Missense_Mutation p.N434S 0.40 deleterious(0) possibly_damaging(0.905) TCGA-D3-A8GM-06 9 136339133 136339133 G A SLC2A6 Silent p.L335L 0.60 TCGA-D3-A8GM-06 9 136653482 136653482 G A VAV2 Silent p.V467V 0.29 TCGA-D3-A8GM-06 9 137622214 137622214 G A COL5A1 Missense_Mutation p.D353N 0.29 possibly_damaging(0.625) TCGA-D3-A8GM-06 9 137693835 137693835 C T COL5A1 Silent p.P996P 0.35 TCGA-D3-A8GM-06 9 137710563 137710563 C T COL5A1 Missense_Mutation p.P1431L 0.17 unknown(0) TCGA-D3-A8GM-06 9 137710716 137710716 C T COL5A1 Missense_Mutation p.S1454F 0.24 unknown(0) TCGA-D3-A8GM-06 9 137772724 137772724 C T FCN2 Silent p.F19F 0.29 TCGA-D3-A8GM-06 9 138376768 138376768 C T PPP1R26 Nonsense_Mutation p.Q138* 0.27 TCGA-D3-A8GM-06 9 138377327 138377327 C T PPP1R26 Missense_Mutation p.P324L 0.37 deleterious(0.01) benign(0.016) TCGA-D3-A8GM-06 9 138395790 138395790 C T MRPS2 Silent p.Y234Y 0.27 TCGA-D3-A8GM-06 9 138646986 138646986 G A KCNT1 Missense_Mutation p.E171K 0.22 tolerated(0.25) benign(0.001) TCGA-D3-A8GM-06 9 138713888 138713888 G A CAMSAP1 Silent p.L873L 0.33 TCGA-D3-A8GM-06 9 139261276 139261276 C T CARD9 Missense_Mutation p.E445K 0.28 tolerated(0.12) benign(0.333) TCGA-D3-A8GM-06 9 139264836 139264836 C T CARD9 Nonsense_Mutation p.W287* 0.45 TCGA-D3-A8GM-06 9 139353596 139353596 G T SEC16A Missense_Mutation p.P1800H 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 139617653 139617653 G A FAM69B Silent p.A241A 0.37 TCGA-D3-A8GM-06 9 139874695 139874695 A G PTGDS Missense_Mutation p.Q170R 0.17 tolerated(0.19) benign(0.005) TCGA-D3-A8GM-06 9 139877994 139877994 C T LCNL1 5'UTR 0.41 TCGA-D3-A8GM-06 9 139925452 139925452 C T FUT7 Missense_Mutation p.V247M 0.29 tolerated(0.27) benign(0.002) TCGA-D3-A8GM-06 9 139934191 139934191 C T NPDC1 3'UTR 0.36 TCGA-D3-A8GM-06 9 140084353 140084353 G A SSNA1 Missense_Mutation p.G116D 0.36 tolerated_low_confidence(0.17) benign(0.165) TCGA-D3-A8GM-06 9 140137978 140137978 C T TUBB4B Silent p.F436F 0.33 TCGA-D3-A8GM-06 9 140150398 140150398 C A NELFB Missense_Mutation p.L48I 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 9 140400068 140400068 C T PNPLA7 Missense_Mutation p.E491K 0.32 tolerated(0.15) benign(0.003) TCGA-D3-A8GM-06 9 140437913 140437913 C T PNPLA7 Silent p.S159S 0.36 TCGA-D3-A8GM-06 9 140611279 140611279 T G EHMT1 Missense_Mutation p.V96G 0.30 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-D3-A8GM-06 9 140646815 140646815 C T EHMT1 Silent p.S401S 0.34 TCGA-D3-A8GM-06 9 140728956 140728956 C T EHMT1 Silent p.I1232I 0.35 TCGA-D3-A8GM-06 9 140954181 140954181 G A CACNA1B Missense_Mutation p.E1554K 0.24 deleterious(0.01) possibly_damaging(0.782) TCGA-D3-A8GM-06 9 14720027 14720027 G A CER1 3'UTR 0.27 TCGA-D3-A8GM-06 9 14746951 14746951 G A FREM1 Silent p.I2036I 0.34 TCGA-D3-A8GM-06 9 14805147 14805147 G A FREM1 Missense_Mutation p.S1093L 0.32 deleterious(0.05) benign(0.111) TCGA-D3-A8GM-06 9 14841498 14841498 A G FREM1 Missense_Mutation p.F610L 0.42 tolerated(0.18) benign(0.32) TCGA-D3-A8GM-06 9 14841568 14841568 G A FREM1 Silent p.F586F 0.28 TCGA-D3-A8GM-06 9 14868761 14868761 A G FREM1 Missense_Mutation p.V72A 0.35 deleterious(0.02) benign(0.435) TCGA-D3-A8GM-06 9 15189785 15189785 C T TTC39B Missense_Mutation p.G371R 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A8GM-06 9 18657715 18657715 G A ADAMTSL1 Missense_Mutation p.D305N 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 18826358 18826358 C T ADAMTSL1 Silent p.S1337S 0.34 TCGA-D3-A8GM-06 9 19786419 19786419 A T SLC24A2 Nonsense_Mutation p.L149* 0.31 TCGA-D3-A8GM-06 9 2029125 2029125 C T SMARCA2 Missense_Mutation p.P35S 0.37 unknown(0) TCGA-D3-A8GM-06 9 21186933 21186933 C T IFNA4 3'UTR 0.31 TCGA-D3-A8GM-06 9 21202187 21202187 G A IFNA7 5'UTR 0.23 TCGA-D3-A8GM-06 9 21455926 21455926 C T MIR31HG RNA 0.41 TCGA-D3-A8GM-06 9 21481387 21481387 C T IFNE Missense_Mutation p.E103K 0.29 tolerated(0.21) benign(0.178) TCGA-D3-A8GM-06 9 23704940 23704940 G A ELAVL2 Missense_Mutation p.R155C 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 9 23704966 23704966 G A ELAVL2 Missense_Mutation p.S146L 0.33 deleterious(0.02) possibly_damaging(0.571) TCGA-D3-A8GM-06 9 26978207 26978207 G A IFT74 Missense_Mutation p.A68T 0.31 tolerated(0.31) benign(0.019) TCGA-D3-A8GM-06 9 27228229 27228229 C T TEK Missense_Mutation p.R1076W 0.40 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 9 27949200 27949200 C T LINGO2 Silent p.G490G 0.34 TCGA-D3-A8GM-06 9 286612 286612 T C DOCK8 Missense_Mutation p.L103S 0.27 tolerated(0.12) probably_damaging(0.948) TCGA-D3-A8GM-06 9 286621 286621 C T DOCK8 Missense_Mutation p.S106F 0.25 tolerated(0.71) benign(0.098) TCGA-D3-A8GM-06 9 3247862 3247862 A G RFX3 Intron 0.40 TCGA-D3-A8GM-06 9 3248122 3248122 G A RFX3 Silent p.I626I 0.36 TCGA-D3-A8GM-06 9 32630909 32630909 G A TAF1L Missense_Mutation p.P1557S 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GM-06 9 32634338 32634338 C T TAF1L Missense_Mutation p.D414N 0.31 tolerated(0.09) benign(0.199) TCGA-D3-A8GM-06 9 33056184 33056184 G A SMU1 Missense_Mutation p.S350F 0.24 deleterious(0) possibly_damaging(0.839) TCGA-D3-A8GM-06 9 33342822 33342822 C T NFX1 Missense_Mutation p.R732C 0.35 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GM-06 9 33386494 33386494 C T AQP7 Missense_Mutation p.G105D 0.21 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 9 334254 334254 C T DOCK8 Silent p.L385L 0.27 TCGA-D3-A8GM-06 9 33462685 33462685 G A NOL6 Nonsense_Mutation p.R1140* 0.20 TCGA-D3-A8GM-06 9 33469502 33469502 G A NOL6 Missense_Mutation p.P241L 0.36 deleterious(0.05) probably_damaging(0.969) TCGA-D3-A8GM-06 9 33795572 33795572 A C PRSS3 Intron 0.15 TCGA-D3-A8GM-06 9 34513176 34513176 G A DNAI1 Missense_Mutation p.G519E 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 34648368 34648368 G A GALT Missense_Mutation p.R201H 0.25 tolerated(0.1) benign(0.008) TCGA-D3-A8GM-06 9 35684281 35684281 G A TPM2 Missense_Mutation p.S245F 0.29 deleterious(0) possibly_damaging(0.855) TCGA-D3-A8GM-06 9 377144 377144 C T DOCK8 Silent p.F791F 0.35 TCGA-D3-A8GM-06 9 37861380 37861380 C T DCAF10 Missense_Mutation p.R519W 0.05 tolerated(0.07) possibly_damaging(0.862) TCGA-D3-A8GM-06 9 38395932 38395932 G A ALDH1B1 Missense_Mutation p.E63K 0.14 tolerated(0.15) probably_damaging(0.944) TCGA-D3-A8GM-06 9 38396814 38396814 C T ALDH1B1 Nonsense_Mutation p.Q357* 0.27 TCGA-D3-A8GM-06 9 3898893 3898893 C T GLIS3 Intron 0.24 TCGA-D3-A8GM-06 9 40774902 40774902 G A ZNF658 Silent p.L125L 0.30 TCGA-D3-A8GM-06 9 4117862 4117862 G A GLIS3 Missense_Mutation p.A539V 0.33 tolerated(0.11) benign(0.359) TCGA-D3-A8GM-06 9 414914 414914 C T DOCK8 Silent p.I1221I 0.32 TCGA-D3-A8GM-06 9 43095145 43095145 G A ANKRD20A3 Missense_Mutation p.P426S 0.32 tolerated(0.73) possibly_damaging(0.857) TCGA-D3-A8GM-06 9 43626651 43626651 G A SPATA31A6 Missense_Mutation p.S679F 0.43 deleterious(0.02) benign(0.377) TCGA-D3-A8GM-06 9 5126736 5126736 C T JAK2 Missense_Mutation p.S1115F 0.28 tolerated(0.07) possibly_damaging(0.553) TCGA-D3-A8GM-06 9 5457096 5457096 C T CD274 Missense_Mutation p.P24S 0.38 tolerated(0.14) benign(0.07) TCGA-D3-A8GM-06 9 5897633 5897633 A G MLANA Missense_Mutation p.N52D 0.11 deleterious(0.02) benign(0.058) TCGA-D3-A8GM-06 9 71532668 71532668 C T PIP5K1B Missense_Mutation p.P326S 0.36 tolerated(0.34) benign(0.075) TCGA-D3-A8GM-06 9 71629005 71629005 C T PRKACG Missense_Mutation p.G2S 0.35 deleterious(0.01) benign(0.057) TCGA-D3-A8GM-06 9 71990729 71990729 C T FAM189A2 Silent p.A67A 0.25 TCGA-D3-A8GM-06 9 72746504 72746504 C T MAMDC2 Missense_Mutation p.P324S 0.32 tolerated(0.18) probably_damaging(1) TCGA-D3-A8GM-06 9 73218277 73218277 C T TRPM3 Missense_Mutation p.G914E 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 73376576 73376576 G A TRPM3 Nonsense_Mutation p.R405* 0.39 TCGA-D3-A8GM-06 9 74344759 74344759 A G TMEM2 Splice_Site p.X683_splice 0.16 TCGA-D3-A8GM-06 9 74840611 74840611 C T GDA Missense_Mutation p.R245C 0.27 tolerated(0.05) benign(0.006) TCGA-D3-A8GM-06 9 75524622 75524622 G A ALDH1A1 Silent p.I418I 0.31 TCGA-D3-A8GM-06 9 77339543 77339543 C T TRPM6 Missense_Mutation p.D2019N 0.17 tolerated_low_confidence(0.32) benign(0.021) TCGA-D3-A8GM-06 9 77354749 77354749 C T TRPM6 Missense_Mutation p.D1793N 0.36 tolerated(0.09) benign(0.019) TCGA-D3-A8GM-06 9 77377781 77377781 C T TRPM6 Missense_Mutation p.G1269E 0.32 tolerated_low_confidence(0.29) benign(0.009) TCGA-D3-A8GM-06 9 77562894 77562894 T G C9orf40 3'UTR 0.29 TCGA-D3-A8GM-06 9 78799597 78799597 C T PCSK5 Missense_Mutation p.L736F 0.34 deleterious(0.01) possibly_damaging(0.526) TCGA-D3-A8GM-06 9 78911713 78911713 G A PCSK5 Missense_Mutation p.G1152E 0.26 deleterious(0.04) benign(0.377) TCGA-D3-A8GM-06 9 78965797 78965797 G A PCSK5 Missense_Mutation p.G1647R 0.37 deleterious(0.02) possibly_damaging(0.859) TCGA-D3-A8GM-06 9 79318494 79318494 C T PRUNE2 Missense_Mutation p.E2679K 0.34 tolerated(0.17) benign(0.037) TCGA-D3-A8GM-06 9 79318590 79318590 C T PRUNE2 Missense_Mutation p.D2647N 0.37 deleterious(0.01) benign(0.108) TCGA-D3-A8GM-06 9 79320277 79320277 C T PRUNE2 Missense_Mutation p.D2305N 0.42 tolerated(0.54) possibly_damaging(0.787) TCGA-D3-A8GM-06 9 79320885 79320885 G A PRUNE2 Missense_Mutation p.S2102F 0.39 deleterious(0) possibly_damaging(0.905) TCGA-D3-A8GM-06 9 79441559 79441559 G A PRUNE2 Missense_Mutation p.P200S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 9 79896780 79896780 T G VPS13A Intron 0.28 TCGA-D3-A8GM-06 9 82333814 82333814 G A TLE4 Silent p.G506G 0.28 TCGA-D3-A8GM-06 9 8341914 8341914 C T PTPRD Missense_Mutation p.E1576K 0.28 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GM-06 9 84531667 84531667 C T SPATA31D5P RNA 0.21 TCGA-D3-A8GM-06 9 84562952 84562952 C T RP11-383M4.6 Intron 0.24 TCGA-D3-A8GM-06 9 84605378 84605378 G A SPATA31D1 Silent p.R93R 0.45 TCGA-D3-A8GM-06 9 84606216 84606216 C T SPATA31D1 Silent p.T277T 0.30 TCGA-D3-A8GM-06 9 84607694 84607694 G A SPATA31D1 Missense_Mutation p.G770E 0.39 tolerated(0.26) possibly_damaging(0.664) TCGA-D3-A8GM-06 9 84609247 84609247 C T SPATA31D1 Missense_Mutation p.P1288S 0.43 tolerated(0.18) benign(0.129) TCGA-D3-A8GM-06 9 84609511 84609511 G A SPATA31D1 Missense_Mutation p.E1376K 0.41 tolerated(0.09) benign(0.062) TCGA-D3-A8GM-06 9 846966 846966 C A DMRT1 Missense_Mutation p.L121M 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GM-06 9 8492952 8492952 C T PTPRD Missense_Mutation p.E793K 0.28 tolerated(0.08) benign(0.13) TCGA-D3-A8GM-06 9 86586796 86586796 C - HNRNPK Splice_Site p.X318_splice 0.30 TCGA-D3-A8GM-06 9 86616625 86616625 C T RMI1 Missense_Mutation p.P242S 0.30 deleterious(0) possibly_damaging(0.765) TCGA-D3-A8GM-06 9 88573432 88573432 C T NAA35 Silent p.P68P 0.34 TCGA-D3-A8GM-06 9 90500238 90500238 C T SPATA31E1 Missense_Mutation p.S279F 0.36 deleterious(0.02) possibly_damaging(0.804) TCGA-D3-A8GM-06 9 94486373 94486373 G A ROR2 Silent p.F801F 0.38 TCGA-D3-A8GM-06 9 94487315 94487315 G A ROR2 Silent p.V487V 0.31 TCGA-D3-A8GM-06 9 94493258 94493258 C T ROR2 Missense_Mutation p.E373K 0.31 tolerated(0.27) benign(0.014) TCGA-D3-A8GM-06 9 96051463 96051463 C T WNK2 Missense_Mutation p.P1513L 0.25 unknown(0) TCGA-D3-A8GM-06 9 96859619 96859619 T A PTPDC1 Nonsense_Mutation p.C255* 0.26 TCGA-D3-A8GM-06 9 98643356 98643356 T C ERCC6L2 Silent p.F95F 0.25 TCGA-D3-A8GM-06 9 99126776 99126776 G A SLC35D2 Silent p.F83F 0.31 TCGA-D3-A8GM-06 X 100349703 100349703 G T TMEM35 Missense_Mutation p.D88Y 0.33 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GM-06 X 100507674 100507674 T C DRP2 Missense_Mutation p.L649P 0.70 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 100617556 100617556 C T BTK Silent p.R171R 0.69 TCGA-D3-A8GM-06 X 10085210 10085210 T C WWC3 Missense_Mutation p.S371P 0.16 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GM-06 X 10106799 10106799 G A WWC3 Silent p.L969L 0.65 TCGA-D3-A8GM-06 X 101572298 101572298 A G NXF2 Intron 0.28 TCGA-D3-A8GM-06 X 101581458 101581458 C T NXF2 3'UTR 0.23 TCGA-D3-A8GM-06 X 102332566 102332566 G A NXF3 Silent p.A520A 0.54 TCGA-D3-A8GM-06 X 102632770 102632770 C T NGFRAP1 3'UTR 0.77 TCGA-D3-A8GM-06 X 103349555 103349555 G A SLC25A53 Missense_Mutation p.A129V 0.65 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 X 105153206 105153206 C T NRK Nonsense_Mutation p.Q526* 0.67 TCGA-D3-A8GM-06 X 105181485 105181485 G A NRK Missense_Mutation p.G1238E 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 106082660 106082660 G A TBC1D8B Silent p.Q442Q 0.65 TCGA-D3-A8GM-06 X 106091525 106091525 G A TBC1D8B Missense_Mutation p.R610Q 0.70 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 X 107320516 107320516 G A VSIG1 Missense_Mutation p.E393K 0.33 tolerated_low_confidence(0.1) unknown(0) TCGA-D3-A8GM-06 X 107406255 107406255 G A COL4A6 Silent p.L1362L 0.59 TCGA-D3-A8GM-06 X 107807122 107807122 G A COL4A5 Missense_Mutation p.G81E 0.55 unknown(0) TCGA-D3-A8GM-06 X 107824213 107824213 G A COL4A5 Missense_Mutation p.G298S 0.68 unknown(0) TCGA-D3-A8GM-06 X 107869547 107869547 A G COL4A5 Missense_Mutation p.S1072G 0.64 unknown(0) TCGA-D3-A8GM-06 X 110644415 110644415 C T DCX Missense_Mutation p.A251T 0.09 tolerated(0.2) benign(0.01) TCGA-D3-A8GM-06 X 111095551 111095551 G A TRPC5 Missense_Mutation p.S451F 0.67 tolerated(0.14) probably_damaging(0.995) TCGA-D3-A8GM-06 X 11174670 11174670 C T ARHGAP6 Missense_Mutation p.R629K 0.69 tolerated(0.05) benign(0.342) TCGA-D3-A8GM-06 X 114242607 114242607 C T IL13RA2 Silent p.L295L 0.62 TCGA-D3-A8GM-06 X 115303871 115303871 G A AGTR2 Missense_Mutation p.G113E 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 117035877 117035877 C T KLHL13 Missense_Mutation p.E470K 0.65 tolerated(0.2) benign(0.279) TCGA-D3-A8GM-06 X 117043324 117043324 G A KLHL13 Silent p.L439L 0.56 TCGA-D3-A8GM-06 X 118215277 118215277 C T KIAA1210 3'UTR 0.55 TCGA-D3-A8GM-06 X 118222357 118222357 G A KIAA1210 Missense_Mutation p.P946S 0.62 tolerated(0.22) benign(0.015) TCGA-D3-A8GM-06 X 118222358 118222358 G T KIAA1210 Silent p.I945I 0.61 TCGA-D3-A8GM-06 X 119388637 119388637 A G ZBTB33 Missense_Mutation p.E456G 0.38 tolerated(0.23) possibly_damaging(0.907) TCGA-D3-A8GM-06 X 123775740 123775740 G A TENM1 Missense_Mutation p.P660S 0.68 tolerated(0.67) benign(0.005) TCGA-D3-A8GM-06 X 12632951 12632951 G A FRMPD4 Missense_Mutation p.D125N 0.66 tolerated(0.14) possibly_damaging(0.898) TCGA-D3-A8GM-06 X 127184999 127184999 C T ACTRT1 3'UTR 0.61 TCGA-D3-A8GM-06 X 127185520 127185520 G A ACTRT1 Silent p.I222I 0.64 TCGA-D3-A8GM-06 X 129215254 129215254 G A ELF4 Silent p.N17N 0.70 TCGA-D3-A8GM-06 X 12938386 12938386 C T TLR8 Silent p.I409I 0.64 TCGA-D3-A8GM-06 X 12938672 12938672 C T TLR8 Missense_Mutation p.P505S 0.57 tolerated(1) benign(0.002) TCGA-D3-A8GM-06 X 129629233 129629233 C T RP1-274L7.1 Intron 0.58 TCGA-D3-A8GM-06 X 131202477 131202477 A G MST4 Silent p.K159K 0.69 TCGA-D3-A8GM-06 X 132161632 132161632 G A USP26 Missense_Mutation p.S206F 0.58 tolerated(0.64) benign(0.01) TCGA-D3-A8GM-06 X 132352004 132352004 G A TFDP3 Missense_Mutation p.P95L 0.70 tolerated(0.66) benign(0.002) TCGA-D3-A8GM-06 X 133700033 133700033 A G PLAC1 3'UTR 0.69 TCGA-D3-A8GM-06 X 134303535 134303535 C T CT55 Missense_Mutation p.G88R 0.59 deleterious(0.05) benign(0.005) TCGA-D3-A8GM-06 X 134713895 134713895 C T DDX26B Nonsense_Mutation p.Q731* 0.73 TCGA-D3-A8GM-06 X 134856890 134856890 G A CT45A1 3'UTR 0.10 TCGA-D3-A8GM-06 X 134947981 134947981 G A CT45A5 Missense_Mutation p.S115F 0.65 tolerated(0.17) benign(0) TCGA-D3-A8GM-06 X 134992323 134992323 G A SAGE1 Missense_Mutation p.D620N 0.69 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GM-06 X 135428452 135428452 C T GPR112 Missense_Mutation p.P863S 0.65 tolerated(0.1) benign(0.186) TCGA-D3-A8GM-06 X 135572527 135572527 G A BRS3 Missense_Mutation p.V224M 0.66 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GM-06 X 137715050 137715050 C T FGF13 Silent p.L243L 0.66 TCGA-D3-A8GM-06 X 138684582 138684582 C T MCF2 Missense_Mutation p.E683K 0.63 deleterious(0) benign(0.297) TCGA-D3-A8GM-06 X 138869365 138869365 A G ATP11C Missense_Mutation p.M523T 0.68 deleterious(0) benign(0.142) TCGA-D3-A8GM-06 X 14027117 14027117 A G GEMIN8 Missense_Mutation p.M215T 0.70 deleterious(0.04) possibly_damaging(0.833) TCGA-D3-A8GM-06 X 140335748 140335748 C T SPANXC Missense_Mutation p.E66K 0.28 deleterious(0.01) possibly_damaging(0.746) TCGA-D3-A8GM-06 X 140993816 140993816 C T MAGEC1 Missense_Mutation p.T209I 0.32 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A8GM-06 X 1413248 1413248 C T CSF2RA Missense_Mutation p.T225I 0.31 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GM-06 X 1460719 1460719 G A IL3RA Missense_Mutation p.E21K 0.31 tolerated(0.54) benign(0.009) TCGA-D3-A8GM-06 X 148044274 148044274 G A AFF2 Missense_Mutation p.R907K 0.42 tolerated(0.93) benign(0.009) TCGA-D3-A8GM-06 X 148797278 148797278 G A MAGEA11 Silent p.Q69Q 0.63 TCGA-D3-A8GM-06 X 149013538 149013538 C T MAGEA8 Silent p.I164I 0.75 TCGA-D3-A8GM-06 X 1497576 1497577 AC - IL3RA Frame_Shift_Del p.R302Cfs*45 0.26 TCGA-D3-A8GM-06 X 150348651 150348651 T C GPR50 Missense_Mutation p.L199P 0.09 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GM-06 X 150789965 150789965 G A PASD1 Missense_Mutation p.E107K 0.65 deleterious(0.03) possibly_damaging(0.86) TCGA-D3-A8GM-06 X 150912178 150912178 C T CNGA2 Silent p.V401V 0.61 TCGA-D3-A8GM-06 X 151092083 151092083 C T MAGEA4 5'UTR 0.72 TCGA-D3-A8GM-06 X 151123984 151123984 G A GABRE Silent p.F331F 0.55 TCGA-D3-A8GM-06 X 151130984 151130984 C T GABRE Silent p.R158R 0.71 TCGA-D3-A8GM-06 X 151131031 151131031 T C GABRE Missense_Mutation p.N143D 0.12 deleterious(0.01) benign(0.063) TCGA-D3-A8GM-06 X 151336789 151336789 G A GABRA3 Missense_Mutation p.P464S 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 151393274 151393274 G A GABRA3 Missense_Mutation p.P199S 0.62 deleterious(0) possibly_damaging(0.817) TCGA-D3-A8GM-06 X 151818308 151818308 G A GABRQ Silent p.R238R 0.64 TCGA-D3-A8GM-06 X 151896664 151896664 C A MAGEA12 3'Flank 0.25 TCGA-D3-A8GM-06 X 151899987 151899987 G A MAGEA12 Silent p.L272L 0.60 TCGA-D3-A8GM-06 X 152037520 152037520 C T NSDHL Missense_Mutation p.R328W 0.55 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GM-06 X 152482393 152482393 G A MAGEA1 Silent p.G206G 0.21 TCGA-D3-A8GM-06 X 152610276 152610276 C T ZNF275 Intron 0.88 TCGA-D3-A8GM-06 X 153224216 153224216 A G HCFC1 Missense_Mutation p.V536A 0.50 tolerated(0.27) probably_damaging(0.966) TCGA-D3-A8GM-06 X 153588236 153588236 G A FLNA Silent p.D1281D 0.33 TCGA-D3-A8GM-06 X 155004431 155004431 T A SPRY3 3'UTR 0.33 TCGA-D3-A8GM-06 X 15841005 15841005 G A ZRSR2 Silent p.R363R 0.80 TCGA-D3-A8GM-06 X 16846219 16846219 G A TXLNG Silent p.L167L 0.67 TCGA-D3-A8GM-06 X 1761785 1761785 C T ASMT Nonsense_Mutation p.Q334* 0.32 TCGA-D3-A8GM-06 X 17746772 17746772 C T NHS Missense_Mutation p.S1388L 0.64 tolerated(0.07) benign(0.007) TCGA-D3-A8GM-06 X 17768183 17768183 C T SCML1 Missense_Mutation p.S158F 0.65 tolerated(0.08) benign(0.119) TCGA-D3-A8GM-06 X 19713822 19713822 T G SH3KBP1 Missense_Mutation p.K143T 0.68 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 X 19971914 19971914 G A CXorf23 Missense_Mutation p.S516L 0.67 tolerated(0.21) benign(0.041) TCGA-D3-A8GM-06 X 2161102 2161102 G A DHRSX Missense_Mutation p.R256C 0.35 deleterious(0.05) possibly_damaging(0.836) TCGA-D3-A8GM-06 X 2161103 2161103 G A DHRSX Silent p.T255T 0.36 TCGA-D3-A8GM-06 X 21887836 21887836 C G MBTPS2 Intron 0.70 TCGA-D3-A8GM-06 X 221832 221832 A G GTPBP6 Missense_Mutation p.V258A 0.30 deleterious(0.02) possibly_damaging(0.887) TCGA-D3-A8GM-06 X 22291532 22291532 C T ZNF645 Nonsense_Mutation p.R142* 0.55 TCGA-D3-A8GM-06 X 24517002 24517002 C T PDK3 Missense_Mutation p.P102L 0.56 tolerated(0.29) benign(0.001) TCGA-D3-A8GM-06 X 2852941 2852941 G A ARSE Missense_Mutation p.P568S 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GM-06 X 29935654 29935654 G A IL1RAPL1 Missense_Mutation p.M284I 0.76 tolerated(0.12) benign(0.301) TCGA-D3-A8GM-06 X 30254662 30254662 C T MAGEB3 Silent p.L207L 0.68 TCGA-D3-A8GM-06 X 31165562 31165562 G A DMD Missense_Mutation p.P3543S 0.77 possibly_damaging(0.803) TCGA-D3-A8GM-06 X 3228603 3228603 C T MXRA5 Silent p.P2547P 0.50 TCGA-D3-A8GM-06 X 3238654 3238654 C T MXRA5 Missense_Mutation p.R1691K 0.66 tolerated(0.29) benign(0.108) TCGA-D3-A8GM-06 X 34149283 34149283 C T FAM47A Silent p.R371R 0.60 TCGA-D3-A8GM-06 X 34149284 34149284 C T FAM47A Missense_Mutation p.R371Q 0.60 tolerated(0.56) benign(0.356) TCGA-D3-A8GM-06 X 35944249 35944249 C T CXorf22 Missense_Mutation p.S122L 0.59 tolerated(0.66) benign(0.013) TCGA-D3-A8GM-06 X 37027003 37027003 G A FAM47C Missense_Mutation p.E174K 0.72 tolerated(0.54) possibly_damaging(0.894) TCGA-D3-A8GM-06 X 37312473 37312473 C T PRRG1 Missense_Mutation p.P86S 0.60 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GM-06 X 37518786 37518786 C T LANCL3 Missense_Mutation p.R257W 0.71 deleterious(0) possibly_damaging(0.606) TCGA-D3-A8GM-06 X 37526535 37526535 G A LANCL3 Missense_Mutation p.G299E 0.62 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GM-06 X 37641353 37641353 G A CYBB Missense_Mutation p.G20R 0.75 deleterious(0.03) benign(0.438) TCGA-D3-A8GM-06 X 37655348 37655348 C T CYBB Missense_Mutation p.H210Y 0.63 deleterious(0.03) probably_damaging(0.967) TCGA-D3-A8GM-06 X 37668861 37668861 G A CYBB Silent p.V501V 0.62 TCGA-D3-A8GM-06 X 39913567 39913567 C A BCOR Missense_Mutation p.Q1587H 0.73 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A8GM-06 X 39934206 39934206 T C BCOR Silent p.T131T 0.36 TCGA-D3-A8GM-06 X 44950088 44950088 C T KDM6A Missense_Mutation p.P1286L 0.53 deleterious(0.02) benign(0.044) TCGA-D3-A8GM-06 X 45013355 45013355 T C CXorf36 Missense_Mutation p.Q254R 0.16 tolerated(0.85) benign(0.002) TCGA-D3-A8GM-06 X 47842369 47842369 A G ZNF182 Missense_Mutation p.I90T 0.11 tolerated(0.13) benign(0.024) TCGA-D3-A8GM-06 X 47919305 47919305 G A ZNF630 Missense_Mutation p.H176Y 0.69 tolerated(0.28) benign(0.001) TCGA-D3-A8GM-06 X 48046155 48046155 C T SSX5 3'UTR 0.60 TCGA-D3-A8GM-06 X 48214148 48214148 C T SSX3 Missense_Mutation p.E35K 0.71 tolerated(1) benign(0.001) TCGA-D3-A8GM-06 X 48826163 48826163 G A KCND1 Silent p.L172L 0.64 TCGA-D3-A8GM-06 X 49105144 49105144 C G CCDC22 Silent p.V460V 0.81 TCGA-D3-A8GM-06 X 49105145 49105145 C T CCDC22 Missense_Mutation p.R461W 0.81 deleterious(0.02) probably_damaging(0.913) TCGA-D3-A8GM-06 X 49452132 49452132 G A PAGE1 3'UTR 0.76 TCGA-D3-A8GM-06 X 52681390 52681390 C T SSX7 Silent p.K64K 0.58 TCGA-D3-A8GM-06 X 53172405 53172405 G C LINC01155 RNA 0.77 TCGA-D3-A8GM-06 X 53223863 53223863 G A KDM5C Missense_Mutation p.R1166C 0.58 deleterious(0.05) possibly_damaging(0.772) TCGA-D3-A8GM-06 X 53225199 53225199 G A KDM5C Missense_Mutation p.R1007C 0.71 deleterious(0.04) possibly_damaging(0.832) TCGA-D3-A8GM-06 X 54107894 54107894 C A FAM120C Splice_Site p.X947_splice 0.71 TCGA-D3-A8GM-06 X 57515347 57515347 C T FAAH2 Silent p.V527V 0.70 TCGA-D3-A8GM-06 X 595420 595420 G A SHOX Silent p.L115L 0.30 TCGA-D3-A8GM-06 X 64734808 64734808 T C LAS1L Missense_Mutation p.Q658R 0.44 deleterious(0.03) possibly_damaging(0.78) TCGA-D3-A8GM-06 X 67937181 67937181 C T STARD8 Missense_Mutation p.A142V 0.62 tolerated(0.52) benign(0) TCGA-D3-A8GM-06 X 69255464 69255464 C T EDA 3'UTR 0.56 TCGA-D3-A8GM-06 X 69424822 69424822 C T DGAT2L6 Missense_Mutation p.P294S 0.75 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 70523540 70523540 C T ITGB1BP2 Missense_Mutation p.H178Y 0.74 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GM-06 X 70612506 70612506 C T TAF1 Missense_Mutation p.P977S 0.64 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GM-06 X 70824387 70824387 T C ACRC Silent p.I420I 0.67 TCGA-D3-A8GM-06 X 71521594 71521594 C T CITED1 Silent p.A213A 0.57 TCGA-D3-A8GM-06 X 71804101 71804101 C T PHKA1 Missense_Mutation p.E1099K 0.53 deleterious(0) possibly_damaging(0.742) TCGA-D3-A8GM-06 X 73064753 73064753 G A XIST RNA 0.66 TCGA-D3-A8GM-06 X 73065945 73065945 G A XIST RNA 0.71 TCGA-D3-A8GM-06 X 73067681 73067681 G A XIST RNA 0.75 TCGA-D3-A8GM-06 X 73960344 73960344 C T KIAA2022 Missense_Mutation p.D1350N 0.63 tolerated(0.11) benign(0.004) TCGA-D3-A8GM-06 X 73960382 73960382 G A KIAA2022 Missense_Mutation p.S1337F 0.65 deleterious(0) probably_damaging(1) TCGA-D3-A8GM-06 X 73962250 73962250 C T KIAA2022 Silent p.R714R 0.69 TCGA-D3-A8GM-06 X 77267147 77267147 C T ATP7A Silent p.S716S 0.59 TCGA-D3-A8GM-06 X 83124905 83124905 C T CYLC1 Missense_Mutation p.S17F 0.53 tolerated(0.72) probably_damaging(0.983) TCGA-D3-A8GM-06 X 83128460 83128460 C T CYLC1 Silent p.L248L 0.59 TCGA-D3-A8GM-06 X 83411083 83411083 C T RPS6KA6 Silent p.K86K 0.66 TCGA-D3-A8GM-06 X 84520157 84520157 C T ZNF711 Missense_Mutation p.T271I 0.58 tolerated(0.17) benign(0.167) TCGA-D3-A8GM-06 X 84559434 84559434 C T POF1B Missense_Mutation p.G494E 0.76 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GM-06 X 84614636 84614636 C T POF1B Splice_Site p.X120_splice 0.54 TCGA-D3-A8GM-06 X 84634286 84634286 G A POF1B Silent p.P58P 0.68 TCGA-D3-A8GM-06 X 84634287 84634287 G A POF1B Missense_Mutation p.P58L 0.65 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GM-06 X 86869005 86869005 A G KLHL4 Missense_Mutation p.D183G 0.58 deleterious(0) probably_damaging(0.942) TCGA-D3-A8GM-06 X 88008535 88008535 G A CPXCR1 Missense_Mutation p.M40I 0.75 tolerated(1) benign(0.216) TCGA-D3-A8GM-06 X 9900542 9900542 G A SHROOM2 Silent p.R1073R 0.64 TCGA-D3-A8GM-06 X 99551367 99551367 C T PCDH19 Missense_Mutation p.E1119K 0.62 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-D3-A8GM-06 X 99955929 99955929 C T SYTL4 Missense_Mutation p.G168E 0.62 tolerated(0.06) benign(0.164) TCGA-D3-A8GM-06 Y 14951942 14951942 A C USP9Y Silent p.T1830T 0.53 TCGA-D3-A8GM-06 Y 15029380 15029380 G A DDX3Y Missense_Mutation p.G610D 0.46 deleterious(0.04) benign(0.027) TCGA-D3-A8GM-06 Y 16936140 16936140 G A NLGN4Y Nonsense_Mutation p.W233* 0.56 TCGA-D3-A8GM-06 Y 16953192 16953192 T A NLGN4Y 3'UTR 0.55 TCGA-D3-A8GM-06 Y 2709645 2709645 C T RPS4Y1 5'UTR 0.68 TCGA-D3-A8GM-06 Y 2844787 2844787 A T ZFY Silent p.A335A 0.38 TCGA-D3-A8GM-06 Y 4925237 4925237 C T PCDH11Y Missense_Mutation p.R125C 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 10 115345619 115345619 C T HABP2 Silent p.R480R 0.33 TCGA-D3-A8GN-06 10 11894194 11894194 C T PROSER2 Missense_Mutation p.R40C 0.16 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GN-06 10 123969938 123969938 C A TACC2 Missense_Mutation p.P2000T 0.21 possibly_damaging(0.573) TCGA-D3-A8GN-06 10 125539742 125539742 C T CPXM2 Missense_Mutation p.E307K 0.21 deleterious(0.01) possibly_damaging(0.833) TCGA-D3-A8GN-06 10 129242468 129242468 C T DOCK1 Missense_Mutation p.P1759S 0.30 tolerated(0.73) possibly_damaging(0.857) TCGA-D3-A8GN-06 10 15256259 15256259 G A FAM171A1 Missense_Mutation p.S443F 0.16 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GN-06 10 30315190 30315190 G A KIAA1462 Missense_Mutation p.A1296V 0.22 tolerated(0.28) possibly_damaging(0.521) TCGA-D3-A8GN-06 10 55782792 55782792 C T PCDH15 Missense_Mutation p.V796I 0.24 tolerated(0.13) benign(0.117) TCGA-D3-A8GN-06 10 71835544 71835544 G A H2AFY2 Missense_Mutation p.G44S 0.38 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GN-06 10 81371713 81371713 G A SFTPA1 Silent p.R59R 0.21 TCGA-D3-A8GN-06 11 106810619 106810619 C T GUCY1A2 Missense_Mutation p.G258E 0.32 deleterious(0) benign(0.326) TCGA-D3-A8GN-06 11 113102974 113102974 T A NCAM1 Nonsense_Mutation p.Y490* 0.33 TCGA-D3-A8GN-06 11 121424794 121424794 C T SORL1 Silent p.S805S 0.12 TCGA-D3-A8GN-06 11 124189494 124189494 G A OR8D2 Silent p.F200F 0.18 TCGA-D3-A8GN-06 11 124252677 124252677 G A OR8B2 Missense_Mutation p.S188F 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GN-06 11 17126809 17126809 G A PIK3C2A Silent p.I1196I 0.30 TCGA-D3-A8GN-06 11 30033894 30033894 C T KCNA4 Missense_Mutation p.S111N 0.10 tolerated_low_confidence(0.06) benign(0.213) TCGA-D3-A8GN-06 11 57799147 57799147 C T OR6Q1 Silent p.A241A 0.24 TCGA-D3-A8GN-06 11 58206980 58206980 G A OR5B12 Silent p.S215S 0.19 TCGA-D3-A8GN-06 11 59211355 59211355 G A OR5A1 Nonsense_Mutation p.W238* 0.21 TCGA-D3-A8GN-06 11 66612639 66612639 C T RCE1 Missense_Mutation p.H208Y 0.26 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GN-06 11 71850703 71850703 G T FOLR3 Missense_Mutation p.C231F 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 11 77451794 77451794 G T RSF1 Nonsense_Mutation p.S187* 0.20 TCGA-D3-A8GN-06 11 89914813 89914813 C T NAALAD2 Silent p.N628N 0.22 TCGA-D3-A8GN-06 12 100603900 100603900 A C ACTR6 Missense_Mutation p.L143F 0.12 tolerated(0.6) probably_damaging(0.998) TCGA-D3-A8GN-06 12 10312997 10312997 T C OLR1 Missense_Mutation p.N210S 0.27 deleterious(0.01) benign(0.01) TCGA-D3-A8GN-06 12 103696059 103696059 G A C12orf42 Missense_Mutation p.H304Y 0.14 tolerated(0.08) benign(0.332) TCGA-D3-A8GN-06 12 110983874 110983874 G A PPTC7 Missense_Mutation p.T138I 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 12 113496126 113496126 C T DTX1 Silent p.T43T 0.16 TCGA-D3-A8GN-06 12 1943540 1943540 G A LRTM2 Missense_Mutation p.E256K 0.07 tolerated(0.26) benign(0.007) TCGA-D3-A8GN-06 12 1967762 1967762 C T CACNA2D4 Silent p.G663G 0.18 TCGA-D3-A8GN-06 12 33560283 33560283 G A SYT10 Missense_Mutation p.S173F 0.14 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GN-06 12 39726789 39726789 C T KIF21A Missense_Mutation p.E870K 0.19 tolerated(0.48) benign(0.194) TCGA-D3-A8GN-06 12 47182365 47182365 G A SLC38A4 Silent p.F52F 0.20 TCGA-D3-A8GN-06 12 48137319 48137319 C A RAPGEF3 Missense_Mutation p.A607S 0.11 tolerated(0.67) benign(0.004) TCGA-D3-A8GN-06 12 48137320 48137320 A G RAPGEF3 Silent p.S606S 0.11 TCGA-D3-A8GN-06 12 53040586 53040586 C T KRT2 Silent p.V469V 0.18 TCGA-D3-A8GN-06 12 5941632 5941632 C T ANO2 Silent p.R253R 0.21 TCGA-D3-A8GN-06 12 6138596 6138596 C T VWF Missense_Mutation p.R960Q 0.18 tolerated(0.26) benign(0.009) TCGA-D3-A8GN-06 12 62148787 62148787 C T FAM19A2 Missense_Mutation p.G42E 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GN-06 12 62790146 62790146 C T USP15 Missense_Mutation p.S881F 0.25 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GN-06 12 7842978 7842978 A G GDF3 Silent p.N197N 0.18 TCGA-D3-A8GN-06 12 79813092 79813092 C G SYT1 Intron 0.12 TCGA-D3-A8GN-06 12 91348339 91348339 C T CCER1 Missense_Mutation p.G61R 0.10 deleterious(0.01) possibly_damaging(0.72) TCGA-D3-A8GN-06 12 98938241 98938241 C T TMPO Missense_Mutation p.R229C 0.15 deleterious(0.02) benign(0.409) TCGA-D3-A8GN-06 13 44464349 44464349 C T LACC1 Silent p.S411S 0.20 TCGA-D3-A8GN-06 13 86368999 86368999 G A SLITRK6 Missense_Mutation p.P549S 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 13 94482562 94482562 G A GPC6 Missense_Mutation p.E159K 0.24 deleterious(0) possibly_damaging(0.696) TCGA-D3-A8GN-06 14 21852211 21852211 C T SUPT16H 5'UTR 0.15 TCGA-D3-A8GN-06 14 23876292 23876292 G T MYH6 Silent p.V47V 0.09 TCGA-D3-A8GN-06 14 38296568 38296568 C T TTC6 Silent p.S1765S 0.25 TCGA-D3-A8GN-06 14 89128148 89128148 C A EML5 Missense_Mutation p.W1175C 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 14 96730208 96730208 C T BDKRB1 Silent p.L63L 0.26 TCGA-D3-A8GN-06 15 102194871 102194871 G A TARSL2 Missense_Mutation p.H775Y 0.21 tolerated(0.08) benign(0.033) TCGA-D3-A8GN-06 15 22368825 22368825 G A OR4M2 Missense_Mutation p.D84N 0.06 deleterious(0.03) possibly_damaging(0.856) TCGA-D3-A8GN-06 15 24921613 24921613 C T NPAP1 Missense_Mutation p.S200F 0.17 deleterious(0.03) benign(0.099) TCGA-D3-A8GN-06 15 41059588 41059588 G A GCHFR 3'UTR 0.24 TCGA-D3-A8GN-06 15 45404079 45404079 G A DUOX2 Missense_Mutation p.P134S 0.24 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GN-06 15 72511434 72511434 G A PKM Missense_Mutation p.S2L 0.11 tolerated_low_confidence(0.24) benign(0.001) TCGA-D3-A8GN-06 15 75641541 75641541 C T NEIL1 Silent p.L99L 0.14 TCGA-D3-A8GN-06 15 88483945 88483945 C T NTRK3 Missense_Mutation p.R542Q 0.11 tolerated(0.35) possibly_damaging(0.903) TCGA-D3-A8GN-06 16 12492341 12492341 T G SNX29 Missense_Mutation p.S646R 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A8GN-06 16 20559477 20559477 G A ACSM2B Silent p.L335L 0.20 TCGA-D3-A8GN-06 16 22145703 22145703 G A VWA3A Missense_Mutation p.D695N 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-D3-A8GN-06 16 23403793 23403793 A C COG7 Missense_Mutation p.I685S 0.20 deleterious(0) possibly_damaging(0.751) TCGA-D3-A8GN-06 16 2732724 2732724 C T KCTD5 Missense_Mutation p.R59W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 16 28509224 28509224 C T APOBR Silent p.A954A 0.21 TCGA-D3-A8GN-06 16 3065283 3065283 G A CLDN6 3'UTR 0.22 TCGA-D3-A8GN-06 16 3254561 3254561 C T OR1F1 Silent p.F105F 0.21 TCGA-D3-A8GN-06 16 50707964 50707964 G A SNX20 Nonsense_Mutation p.Q102* 0.16 TCGA-D3-A8GN-06 16 55360397 55360397 C T IRX6 Silent p.G65G 0.17 TCGA-D3-A8GN-06 16 57921911 57921911 C T CNGB1 Missense_Mutation p.G1104S 0.26 deleterious(0.05) possibly_damaging(0.694) TCGA-D3-A8GN-06 16 61747755 61747755 C T CDH8 Silent p.K548K 0.18 TCGA-D3-A8GN-06 16 72993652 72993652 C T ZFHX3 Silent p.G131G 0.11 TCGA-D3-A8GN-06 16 77369757 77369757 G A ADAMTS18 Silent p.P585P 0.21 TCGA-D3-A8GN-06 16 77910337 77910337 C T VAT1L Missense_Mutation p.L265F 0.13 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GN-06 16 78064729 78064729 C T CLEC3A Silent p.I204I 0.24 TCGA-D3-A8GN-06 16 81685864 81685864 C T CMIP Silent p.V178V 0.16 TCGA-D3-A8GN-06 16 83994221 83994221 C T OSGIN1 Silent p.P84P 0.13 TCGA-D3-A8GN-06 16 89350087 89350087 G A ANKRD11 Silent p.L955L 0.19 TCGA-D3-A8GN-06 17 10247198 10247198 C T MYH13 Missense_Mutation p.E605K 0.26 deleterious(0.01) benign(0.1) TCGA-D3-A8GN-06 17 11597302 11597302 G A DNAH9 Missense_Mutation p.D1578N 0.17 benign(0.008) TCGA-D3-A8GN-06 17 17075175 17075175 C T MPRIP Silent p.I769I 0.17 TCGA-D3-A8GN-06 17 19284567 19284567 A T MAPK7 Nonsense_Mutation p.K349* 0.25 TCGA-D3-A8GN-06 17 27028017 27028017 C T SUPT6H Missense_Mutation p.S1622F 0.15 tolerated(0.45) possibly_damaging(0.706) TCGA-D3-A8GN-06 17 29654720 29654720 C T NF1 Silent p.I1824I 0.23 TCGA-D3-A8GN-06 17 39041317 39041317 C T KRT20 Missense_Mutation p.G41S 0.19 deleterious(0.04) probably_damaging(0.961) TCGA-D3-A8GN-06 17 40330239 40330239 G A KCNH4 Missense_Mutation p.S155F 0.24 tolerated(0.39) benign(0.013) TCGA-D3-A8GN-06 17 45904422 45904422 T C MRPL10 Missense_Mutation p.K134R 0.23 deleterious(0.04) probably_damaging(0.954) TCGA-D3-A8GN-06 17 48264435 48264435 G A COL1A1 Missense_Mutation p.L1158F 0.27 unknown(0) TCGA-D3-A8GN-06 17 48270367 48270367 G A COL1A1 Silent p.P603P 0.31 TCGA-D3-A8GN-06 17 51901507 51901507 G A KIF2B Silent p.K371K 0.18 TCGA-D3-A8GN-06 17 58511378 58511378 C T C17orf64 3'Flank 0.20 TCGA-D3-A8GN-06 17 61611468 61611468 C T KCNH6 Silent p.P299P 0.30 TCGA-D3-A8GN-06 17 61611469 61611469 C T KCNH6 Missense_Mutation p.L300F 0.29 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GN-06 17 72537647 72537647 C T CD300C 3'UTR 0.20 TCGA-D3-A8GN-06 17 7674777 7674777 C T DNAH2 Missense_Mutation p.H1498Y 0.19 probably_damaging(0.962) TCGA-D3-A8GN-06 17 79226023 79226023 T A SLC38A10 Silent p.T639T 0.18 TCGA-D3-A8GN-06 17 79826788 79826788 C T ARHGDIA Silent p.E193E 0.15 TCGA-D3-A8GN-06 17 9578262 9578262 C T USP43 Silent p.F265F 0.22 TCGA-D3-A8GN-06 18 29038468 29038468 G A DSG3 Missense_Mutation p.D93N 0.23 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GN-06 18 44260164 44260164 G A ST8SIA5 Silent p.F324F 0.22 TCGA-D3-A8GN-06 18 44268855 44268855 G A ST8SIA5 Silent p.A113A 0.22 TCGA-D3-A8GN-06 18 51057048 51057048 G A DCC 3'UTR 0.15 TCGA-D3-A8GN-06 18 5292199 5292199 A G ZBTB14 Missense_Mutation p.F3S 0.27 deleterious_low_confidence(0) benign(0.002) TCGA-D3-A8GN-06 18 56205350 56205350 G A ALPK2 Missense_Mutation p.S690F 0.08 tolerated(0.69) benign(0.015) TCGA-D3-A8GN-06 19 14730134 14730134 C T EMR3 3'UTR 0.22 TCGA-D3-A8GN-06 19 19377382 19377382 C T TM6SF2 Missense_Mutation p.G281S 0.14 tolerated(0.4) benign(0.254) TCGA-D3-A8GN-06 19 22154984 22154984 C T ZNF208 Missense_Mutation p.G951D 0.07 deleterious(0.05) unknown(0) TCGA-D3-A8GN-06 19 22364037 22364037 C T ZNF676 Missense_Mutation p.R161K 0.17 tolerated(0.3) benign(0.002) TCGA-D3-A8GN-06 19 39660193 39660193 C T PAK4 5'UTR 0.14 TCGA-D3-A8GN-06 19 40698196 40698196 C T MAP3K10 Silent p.G86G 0.40 TCGA-D3-A8GN-06 19 43529093 43529093 C T PSG11 Silent p.Q60Q 0.13 TCGA-D3-A8GN-06 19 4359226 4359226 G A MPND Missense_Mutation p.E435K 0.09 tolerated(0.09) benign(0.04) TCGA-D3-A8GN-06 19 54080319 54080319 C T ZNF331 Missense_Mutation p.R169C 0.20 tolerated(0.17) probably_damaging(0.95) TCGA-D3-A8GN-06 19 54200848 54200848 C T MIR525 RNA 0.14 TCGA-D3-A8GN-06 19 54627885 54627885 C G PRPF31 Silent p.A235A 0.17 TCGA-D3-A8GN-06 19 55144585 55144585 G A LILRB1 Silent p.K359K 0.20 TCGA-D3-A8GN-06 19 56515139 56515139 C T NLRP5 Silent p.F40F 0.26 TCGA-D3-A8GN-06 19 56539700 56539700 C T NLRP5 Missense_Mutation p.R701C 0.26 tolerated(0.19) benign(0.006) TCGA-D3-A8GN-06 19 5772937 5772937 G A CATSPERD Missense_Mutation p.M634I 0.12 tolerated(1) benign(0.002) TCGA-D3-A8GN-06 19 5831372 5831372 C T FUT6 3'UTR 0.10 TCGA-D3-A8GN-06 19 8668757 8668757 G A ADAMTS10 Silent p.I149I 0.16 TCGA-D3-A8GN-06 19 9046718 9046718 G A MUC16 Missense_Mutation p.S11638F 0.14 benign(0.063) TCGA-D3-A8GN-06 19 9075262 9075262 G A MUC16 Missense_Mutation p.L4062F 0.09 unknown(0) TCGA-D3-A8GN-06 1 110300575 110300575 C T EPS8L3 Missense_Mutation p.D276N 0.20 tolerated(0.79) benign(0.001) TCGA-D3-A8GN-06 1 116929972 116929972 C T ATP1A1 Silent p.P82P 0.13 TCGA-D3-A8GN-06 1 12919579 12919579 G A PRAMEF2 Missense_Mutation p.D107N 0.16 tolerated(1) benign(0.077) TCGA-D3-A8GN-06 1 152325217 152325217 C T FLG2 Missense_Mutation p.G1682E 0.39 possibly_damaging(0.782) TCGA-D3-A8GN-06 1 155018459 155018459 G A DCST1 Silent p.R421R 0.31 TCGA-D3-A8GN-06 1 158735615 158735615 G A OR6N1 Silent p.N286N 0.10 TCGA-D3-A8GN-06 1 161018572 161018572 C T ARHGAP30 Missense_Mutation p.E747K 0.09 tolerated_low_confidence(0.45) benign(0.008) TCGA-D3-A8GN-06 1 161594256 161594256 G A FCGR3B 3'UTR 0.18 TCGA-D3-A8GN-06 1 16360194 16360194 G A CLCNKA 3'UTR 0.20 TCGA-D3-A8GN-06 1 169564075 169564075 C T SELP Silent p.A714A 0.36 TCGA-D3-A8GN-06 1 172437638 172437638 C T C1orf105 Silent p.F152F 0.07 TCGA-D3-A8GN-06 1 176668617 176668617 C T PAPPA2 Missense_Mutation p.P1043L 0.40 deleterious(0.05) possibly_damaging(0.478) TCGA-D3-A8GN-06 1 186057884 186057884 C T HMCN1 Nonsense_Mutation p.Q3242* 0.09 TCGA-D3-A8GN-06 1 196295941 196295941 C T KCNT2 Missense_Mutation p.A728T 0.07 tolerated(0.13) probably_damaging(0.995) TCGA-D3-A8GN-06 1 196646637 196646637 G A CFH Silent p.E153E 0.40 TCGA-D3-A8GN-06 1 196749015 196749015 C T CFHR3 Silent p.C114C 0.40 TCGA-D3-A8GN-06 1 20979171 20979171 G A DDOST Silent p.F388F 0.19 TCGA-D3-A8GN-06 1 228431139 228431139 C T OBSCN Missense_Mutation p.S1154F 0.39 benign(0.03) TCGA-D3-A8GN-06 1 233518328 233518328 C T MLK4 Silent p.S994S 0.10 TCGA-D3-A8GN-06 1 237664159 237664159 C T RYR2 Silent p.I784I 0.08 TCGA-D3-A8GN-06 1 247769044 247769044 C T OR2G3 Missense_Mutation p.P53S 0.06 tolerated(0.46) benign(0.01) TCGA-D3-A8GN-06 1 247902606 247902606 G A OR14K1 Silent p.Q230Q 0.10 TCGA-D3-A8GN-06 1 32221740 32221740 G A BAI2 Missense_Mutation p.S233F 0.17 deleterious(0.04) benign(0.013) TCGA-D3-A8GN-06 1 34038239 34038239 C T CSMD2 Silent p.K2545K 0.12 TCGA-D3-A8GN-06 1 34663055 34663055 C T C1orf94 Missense_Mutation p.L184F 0.12 tolerated(0.13) probably_damaging(0.926) TCGA-D3-A8GN-06 1 35454418 35454418 G A ZMYM6 Silent p.I755I 0.33 TCGA-D3-A8GN-06 1 42047016 42047016 G A HIVEP3 Silent p.L1151L 0.22 TCGA-D3-A8GN-06 1 44820605 44820605 G A ERI3 Missense_Mutation p.P32S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-D3-A8GN-06 1 47501542 47501542 C T CYP4X1 Missense_Mutation p.S186L 0.12 tolerated(1) benign(0) TCGA-D3-A8GN-06 1 47689758 47689758 C T TAL1 Silent p.G153G 0.21 TCGA-D3-A8GN-06 1 57349331 57349331 G A C8A Missense_Mutation p.E278K 0.16 tolerated(0.46) benign(0.004) TCGA-D3-A8GN-06 1 74905264 74905264 G A TNNI3K Missense_Mutation p.E758K 0.20 deleterious(0) benign(0.43) TCGA-D3-A8GN-06 1 75055198 75055198 C T C1orf173 Intron 0.21 TCGA-D3-A8GN-06 1 75708592 75708592 C T SLC44A5 Silent p.K150K 0.24 TCGA-D3-A8GN-06 1 82416061 82416061 C T LPHN2 Missense_Mutation p.P463S 0.23 tolerated(0.07) possibly_damaging(0.897) TCGA-D3-A8GN-06 20 2290457 2290457 G A TGM3 Silent p.L54L 0.19 TCGA-D3-A8GN-06 20 32232331 32232331 G A CBFA2T2 Missense_Mutation p.G565D 0.17 tolerated(0.1) benign(0.035) TCGA-D3-A8GN-06 20 48500390 48500390 G A SLC9A8 Silent p.R442R 0.15 TCGA-D3-A8GN-06 20 56186881 56186881 G A ZBP1 Missense_Mutation p.S259F 0.33 deleterious(0) probably_damaging(0.939) TCGA-D3-A8GN-06 20 58547069 58547069 C T CDH26 Missense_Mutation p.P95L 0.18 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GN-06 21 35186356 35186356 C T ITSN1 Missense_Mutation p.P903S 0.22 tolerated(0.2) benign(0.418) TCGA-D3-A8GN-06 22 29446336 29446336 C T ZNRF3 Missense_Mutation p.P723S 0.15 tolerated_low_confidence(0.17) benign(0.009) TCGA-D3-A8GN-06 22 30163480 30163480 C T UQCR10 Silent p.F31F 0.23 TCGA-D3-A8GN-06 22 32239705 32239705 C T DEPDC5 Missense_Mutation p.S894F 0.13 deleterious(0.01) benign(0.238) TCGA-D3-A8GN-06 22 38379586 38379586 G A SOX10 Missense_Mutation p.P69L 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 22 39388453 39388453 G A APOBEC3B 3'UTR 0.12 TCGA-D3-A8GN-06 2 101967507 101967507 G A CREG2 Missense_Mutation p.R251C 0.12 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A8GN-06 2 107007416 107007416 C T PLGLA RNA 0.43 TCGA-D3-A8GN-06 2 108443528 108443528 C T RGPD4 Missense_Mutation p.P20L 0.46 tolerated(0.07) possibly_damaging(0.726) TCGA-D3-A8GN-06 2 141571280 141571280 C A LRP1B Missense_Mutation p.V1769L 0.06 benign(0.097) TCGA-D3-A8GN-06 2 1459922 1459922 C T TPO Silent p.L229L 0.31 TCGA-D3-A8GN-06 2 152471011 152471011 G A NEB Missense_Mutation p.H3794Y 0.33 possibly_damaging(0.816) TCGA-D3-A8GN-06 2 15496481 15496481 G A NBAS Missense_Mutation p.R1293C 0.32 tolerated(0.09) benign(0.129) TCGA-D3-A8GN-06 2 166020359 166020359 C T SCN3A Intron 0.26 TCGA-D3-A8GN-06 2 166020919 166020919 G A SCN3A Silent p.F195F 0.23 TCGA-D3-A8GN-06 2 166747095 166747095 G A TTC21B Missense_Mutation p.R1053C 0.24 deleterious(0) benign(0.003) TCGA-D3-A8GN-06 2 166909443 166909443 C T SCN1A Missense_Mutation p.E205K 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GN-06 2 179596951 179596951 C T TTN Missense_Mutation p.R5582K 0.28 TCGA-D3-A8GN-06 2 20196962 20196962 C T MATN3 Silent p.G409G 0.41 TCGA-D3-A8GN-06 2 207513416 207513416 C T DYTN 3'Flank 0.25 TCGA-D3-A8GN-06 2 219296795 219296795 G A VIL1 Silent p.L410L 0.34 TCGA-D3-A8GN-06 2 219508674 219508674 G A ZNF142 Silent p.S855S 0.33 TCGA-D3-A8GN-06 2 227663197 227663197 G A IRS1 Silent p.L86L 0.08 TCGA-D3-A8GN-06 2 227983443 227983443 G A COL4A4 Missense_Mutation p.P136L 0.19 probably_damaging(0.953) TCGA-D3-A8GN-06 2 231265960 231265960 C T SP140L Intron 0.30 TCGA-D3-A8GN-06 2 234217897 234217897 C T SAG Missense_Mutation p.S21F 0.09 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GN-06 2 23980471 23980471 C T ATAD2B Missense_Mutation p.G1299R 0.09 tolerated(0.52) benign(0.168) TCGA-D3-A8GN-06 2 241808393 241808393 C T AGXT Silent p.I37I 0.09 TCGA-D3-A8GN-06 2 27121478 27121478 G A DPYSL5 Silent p.Q37Q 0.28 TCGA-D3-A8GN-06 2 27799471 27799471 G A C2orf16 Missense_Mutation p.G11D 0.07 tolerated(0.2) benign(0.016) TCGA-D3-A8GN-06 2 28816884 28816884 C T PLB1 Intron 0.26 TCGA-D3-A8GN-06 2 73827871 73827871 C T ALMS1 Missense_Mutation p.P3911L 0.09 probably_damaging(1) TCGA-D3-A8GN-06 2 79878690 79878690 C T CTNNA2 Missense_Mutation p.S3L 0.23 tolerated_low_confidence(0.11) benign(0.049) TCGA-D3-A8GN-06 3 100277335 100277335 G A TMEM45A Missense_Mutation p.G164S 0.23 tolerated(0.26) probably_damaging(0.948) TCGA-D3-A8GN-06 3 113699538 113699538 G A KIAA1407 Missense_Mutation p.P756S 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 3 124385315 124385315 G A KALRN Missense_Mutation p.G213E 0.08 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GN-06 3 164750406 164750406 G A SI Silent p.I880I 0.19 TCGA-D3-A8GN-06 3 167507165 167507165 T G SERPINI1 Missense_Mutation p.N83K 0.20 tolerated(0.9) benign(0.011) TCGA-D3-A8GN-06 3 179069709 179069709 T C MFN1 Missense_Mutation p.L45P 0.14 tolerated(0.13) benign(0.033) TCGA-D3-A8GN-06 3 179593236 179593236 C T PEX5L Missense_Mutation p.D179N 0.14 tolerated_low_confidence(0.09) benign(0.002) TCGA-D3-A8GN-06 3 25686832 25686832 G A TOP2B Missense_Mutation p.R62C 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 3 36778777 36778777 G A DCLK3 Silent p.I458I 0.21 TCGA-D3-A8GN-06 3 36898459 36898459 G A TRANK1 Silent p.I874I 0.20 TCGA-D3-A8GN-06 3 38317785 38317785 C T SLC22A13 Silent p.P415P 0.29 TCGA-D3-A8GN-06 3 38927628 38927628 C T SCN11A Silent p.Q979Q 0.27 TCGA-D3-A8GN-06 3 43122925 43122925 C T POMGNT2 5'UTR 0.36 TCGA-D3-A8GN-06 3 51864450 51864450 G A IQCF3 Missense_Mutation p.R33K 0.23 tolerated(0.39) benign(0.036) TCGA-D3-A8GN-06 3 52255353 52255353 G A TLR9 Silent p.L1147L 0.18 TCGA-D3-A8GN-06 3 53853592 53853592 G A CHDH Silent p.H410H 0.21 TCGA-D3-A8GN-06 3 97984040 97984040 G A OR5H6 Missense_Mutation p.M304I 0.17 tolerated(0.58) benign(0) TCGA-D3-A8GN-06 4 122068217 122068217 C T TNIP3 Missense_Mutation p.R318K 0.18 tolerated(1) benign(0.022) TCGA-D3-A8GN-06 4 126370708 126370708 C T FAT4 Missense_Mutation p.S2846F 0.17 probably_damaging(0.995) TCGA-D3-A8GN-06 4 138451634 138451634 C T PCDH18 Missense_Mutation p.E537K 0.12 tolerated(0.06) possibly_damaging(0.755) TCGA-D3-A8GN-06 4 1388947 1388947 G A CRIPAK Nonsense_Mutation p.W216* 0.21 TCGA-D3-A8GN-06 4 169632934 169632934 G A PALLD Silent p.R608R 0.23 TCGA-D3-A8GN-06 4 185045398 185045398 C T ENPP6 Missense_Mutation p.R150K 0.22 tolerated(0.35) benign(0.057) TCGA-D3-A8GN-06 4 49063860 49063860 G A CWH43 Missense_Mutation p.E685K 0.19 tolerated(0.37) benign(0.006) TCGA-D3-A8GN-06 4 57181763 57181763 C T KIAA1211 Missense_Mutation p.P699S 0.23 tolerated(0.08) possibly_damaging(0.803) TCGA-D3-A8GN-06 4 6066624 6066624 C T JAKMIP1 Missense_Mutation p.E472K 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-D3-A8GN-06 5 1235725 1235725 C T SLC6A18 Missense_Mutation p.S190F 0.10 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GN-06 5 1235726 1235726 C T SLC6A18 Silent p.S190S 0.09 TCGA-D3-A8GN-06 5 129015461 129015461 C T ADAMTS19 Silent p.L831L 0.13 TCGA-D3-A8GN-06 5 134782228 134782228 G A C5orf20 Missense_Mutation p.P191S 0.10 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D3-A8GN-06 5 140594016 140594016 C T PCDHB13 Silent p.F107F 0.08 TCGA-D3-A8GN-06 5 140594602 140594602 G A PCDHB13 Missense_Mutation p.E303K 0.30 tolerated_low_confidence(0.08) benign(0) TCGA-D3-A8GN-06 5 140745551 140745551 G A PCDHGA5 Missense_Mutation p.V552M 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.724) TCGA-D3-A8GN-06 5 147889393 147889393 G A HTR4 Silent p.A234A 0.14 TCGA-D3-A8GN-06 5 151054212 151054212 C T SPARC Silent p.E27E 0.20 TCGA-D3-A8GN-06 5 156589643 156589643 G A FAM71B Missense_Mutation p.P545S 0.17 tolerated(0.12) benign(0.051) TCGA-D3-A8GN-06 5 160761829 160761829 G A GABRB2 Silent p.I254I 0.10 TCGA-D3-A8GN-06 5 168119686 168119686 C T SLIT3 Silent p.V1034V 0.24 TCGA-D3-A8GN-06 5 31323230 31323230 C T CDH6 Missense_Mutation p.P730S 0.09 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 5 35040683 35040683 G A AGXT2 Silent p.Y58Y 0.20 TCGA-D3-A8GN-06 5 35068941 35068941 G A PRLR Missense_Mutation p.A242V 0.19 deleterious(0.04) probably_damaging(0.983) TCGA-D3-A8GN-06 5 42808423 42808423 G A SEPP1 Silent p.L11L 0.26 TCGA-D3-A8GN-06 5 79351636 79351636 G A THBS4 Silent p.G107G 0.26 TCGA-D3-A8GN-06 6 150569955 150569955 G A PPP1R14C Silent p.%3D 0.21 TCGA-D3-A8GN-06 6 161139388 161139388 C T PLG Missense_Mutation p.R284C 0.26 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GN-06 6 27368830 27368830 G A ZNF391 Silent p.G227G 0.12 TCGA-D3-A8GN-06 6 27835080 27835080 C T HIST1H1B Silent p.V76V 0.26 TCGA-D3-A8GN-06 6 28540734 28540734 C T SCAND3 Missense_Mutation p.G978R 0.15 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GN-06 6 29342680 29342680 G A OR12D3 Missense_Mutation p.R129C 0.15 deleterious(0.04) benign(0.001) TCGA-D3-A8GN-06 6 33690674 33690674 G A IP6K3 Silent p.A352A 0.24 TCGA-D3-A8GN-06 6 35836864 35836864 G A SRPK1 Missense_Mutation p.L479F 0.22 deleterious(0.03) probably_damaging(0.966) TCGA-D3-A8GN-06 6 38851123 38851123 G A DNAH8 Missense_Mutation p.G2459E 0.13 probably_damaging(1) TCGA-D3-A8GN-06 6 39895213 39895213 G A MOCS1 Silent p.L35L 0.17 TCGA-D3-A8GN-06 6 40399828 40399828 C T LRFN2 Missense_Mutation p.G342D 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 6 41908263 41908263 G A CCND3 Missense_Mutation p.R87C 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 6 42236910 42236910 A G TRERF1 Missense_Mutation p.L140S 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D3-A8GN-06 6 42689943 42689943 C T PRPH2 Missense_Mutation p.E44K 0.20 deleterious(0) possibly_damaging(0.544) TCGA-D3-A8GN-06 6 50696595 50696595 G A TFAP2D Missense_Mutation p.D209N 0.10 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GN-06 6 84371318 84371318 C T SNAP91 Missense_Mutation p.D119N 0.34 deleterious(0.01) unknown(0) TCGA-D3-A8GN-06 6 87725311 87725311 C T HTR1E Missense_Mutation p.R87C 0.26 deleterious(0.02) possibly_damaging(0.505) TCGA-D3-A8GN-06 7 100085911 100085911 G A NYAP1 Silent p.G189G 0.26 TCGA-D3-A8GN-06 7 111517194 111517194 G A DOCK4 Missense_Mutation p.P546S 0.24 deleterious(0.02) benign(0.126) TCGA-D3-A8GN-06 7 129592353 129592353 C T UBE2H Missense_Mutation p.V15M 0.11 deleterious(0.03) possibly_damaging(0.669) TCGA-D3-A8GN-06 7 130561497 130561497 C T MIR29A 3'Flank 0.11 TCGA-D3-A8GN-06 7 135287702 135287702 C T NUP205 Missense_Mutation p.P888S 0.14 deleterious(0.05) possibly_damaging(0.654) TCGA-D3-A8GN-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GN-06 7 141758124 141758124 C T MGAM Missense_Mutation p.P1272L 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GN-06 7 142423230 142423230 C T TRBV27 Silent p.L5L 0.27 TCGA-D3-A8GN-06 7 142649656 142649656 G A KEL Silent p.F381F 0.22 TCGA-D3-A8GN-06 7 142920092 142920092 G A TAS2R40 Nonsense_Mutation p.W307* 0.35 TCGA-D3-A8GN-06 7 148876577 148876577 C T ZNF398 Missense_Mutation p.P538L 0.26 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GN-06 7 149479282 149479282 G A SSPO RNA 0.22 TCGA-D3-A8GN-06 7 150027526 150027526 C T ZBED6CL Silent p.A11A 0.25 TCGA-D3-A8GN-06 7 150389469 150389469 G A GIMAP2 Missense_Mutation p.G32E 0.17 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GN-06 7 150553606 150553606 G T AOC1 Silent p.T16T 0.26 TCGA-D3-A8GN-06 7 150745962 150745962 G A ASIC3 5'Flank 0.23 TCGA-D3-A8GN-06 7 2687557 2687557 C T TTYH3 Intron 0.21 TCGA-D3-A8GN-06 7 31736643 31736643 G A PPP1R17 Missense_Mutation p.M100I 0.28 tolerated_low_confidence(0.6) benign(0.028) TCGA-D3-A8GN-06 7 43447224 43447224 C T HECW1 Missense_Mutation p.S232F 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GN-06 7 43591931 43591931 G A HECW1 Silent p.R1502R 0.15 TCGA-D3-A8GN-06 7 44555496 44555496 G A NPC1L1 Silent p.L1261L 0.29 TCGA-D3-A8GN-06 7 72413660 72413660 C T POM121 Missense_Mutation p.T778M 0.11 deleterious(0.01) possibly_damaging(0.615) TCGA-D3-A8GN-06 7 78636414 78636414 G A MAGI2 Missense_Mutation p.T137M 0.05 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GN-06 7 80302144 80302144 C T CD36 Missense_Mutation p.P395L 0.23 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GN-06 7 82784993 82784993 C T PCLO Missense_Mutation p.E322K 0.30 unknown(0) TCGA-D3-A8GN-06 7 87150164 87150164 C T ABCB1 Missense_Mutation p.R905Q 0.12 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GN-06 7 89901167 89901167 C T C7orf63 Missense_Mutation p.P252L 0.24 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GN-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.12 probably_damaging(0.984) TCGA-D3-A8GN-06 8 110431323 110431323 C T PKHD1L1 Intron 0.18 TCGA-D3-A8GN-06 8 124219494 124219494 G A FAM83A Missense_Mutation p.A291T 0.08 deleterious(0.03) benign(0.303) TCGA-D3-A8GN-06 8 145584612 145584612 C T SLC52A2 Silent p.P425P 0.19 TCGA-D3-A8GN-06 8 17731898 17731898 C T FGL1 Missense_Mutation p.R126Q 0.18 deleterious(0) probably_damaging(0.962) TCGA-D3-A8GN-06 8 2808778 2808778 G A CSMD1 Silent p.F3353F 0.19 TCGA-D3-A8GN-06 8 2836241 2836241 C T CSMD1 Missense_Mutation p.G2820E 0.24 probably_damaging(0.94) TCGA-D3-A8GN-06 8 39678582 39678582 G A ADAM2 Missense_Mutation p.S151F 0.18 tolerated(0.65) benign(0.032) TCGA-D3-A8GN-06 8 39785581 39785581 G A IDO1 Silent p.K363K 0.25 TCGA-D3-A8GN-06 8 53573197 53573197 G A RB1CC1 Missense_Mutation p.R550C 0.24 deleterious(0.01) possibly_damaging(0.847) TCGA-D3-A8GN-06 8 72964973 72964973 C T TRPA1 Missense_Mutation p.E558K 0.16 deleterious(0.02) possibly_damaging(0.805) TCGA-D3-A8GN-06 8 77617776 77617776 G A ZFHX4 Missense_Mutation p.E485K 0.25 possibly_damaging(0.502) TCGA-D3-A8GN-06 8 99440768 99440768 G A KCNS2 Silent p.R187R 0.08 TCGA-D3-A8GN-06 9 100431129 100431129 G A NCBP1 Missense_Mutation p.R673Q 0.14 tolerated(0.58) benign(0.028) TCGA-D3-A8GN-06 9 104335345 104335345 C T GRIN3A 3'UTR 0.40 TCGA-D3-A8GN-06 9 114190364 114190364 G A KIAA0368 Silent p.L514L 0.20 TCGA-D3-A8GN-06 9 115642054 115642054 G A SLC46A2 Silent p.I472I 0.17 TCGA-D3-A8GN-06 9 123857182 123857182 A G CNTRL Missense_Mutation p.E122G 0.18 possibly_damaging(0.858) TCGA-D3-A8GN-06 9 127818262 127818262 G A SCAI Silent p.I64I 0.31 TCGA-D3-A8GN-06 9 138825113 138825113 G A UBAC1 3'UTR 0.19 TCGA-D3-A8GN-06 9 15744626 15744626 G A CCDC171 Missense_Mutation p.R802Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GN-06 9 27949733 27949733 C T LINGO2 Missense_Mutation p.E313K 0.20 deleterious(0.03) possibly_damaging(0.772) TCGA-D3-A8GN-06 9 34088389 34088389 G A DCAF12 Missense_Mutation p.P441S 0.16 tolerated(0.07) possibly_damaging(0.541) TCGA-D3-A8GN-06 9 79326139 79326139 C T PRUNE2 Missense_Mutation p.E351K 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GN-06 9 95796825 95796825 G A FGD3 Silent p.K596K 0.23 TCGA-D3-A8GN-06 9 96440037 96440037 C T PHF2 3'UTR 0.14 TCGA-D3-A8GN-06 9 96440038 96440038 C T PHF2 3'UTR 0.14 TCGA-D3-A8GN-06 X 102755547 102755547 G A RAB40A Silent p.L46L 0.10 TCGA-D3-A8GN-06 X 105277401 105277401 C T SERPINA7 3'UTR 0.16 TCGA-D3-A8GN-06 X 106185319 106185319 C T MORC4 Missense_Mutation p.A837T 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GN-06 X 112025867 112025867 G A AMOT Missense_Mutation p.S714F 0.07 possibly_damaging(0.472) TCGA-D3-A8GN-06 X 117043976 117043976 G A KLHL13 Silent p.F221F 0.09 TCGA-D3-A8GN-06 X 117707868 117707868 G A DOCK11 Missense_Mutation p.E426K 0.11 tolerated(0.2) benign(0.028) TCGA-D3-A8GN-06 X 122802125 122802125 C T THOC2 Missense_Mutation p.R301Q 0.08 tolerated(0.38) benign(0.001) TCGA-D3-A8GN-06 X 125685396 125685396 C T DCAF12L1 Missense_Mutation p.R399K 0.20 tolerated(0.12) benign(0.09) TCGA-D3-A8GN-06 X 129201299 129201299 G A ELF4 Silent p.F463F 0.08 TCGA-D3-A8GN-06 X 132159513 132159513 C T USP26 Silent p.K912K 0.17 TCGA-D3-A8GN-06 X 135049653 135049653 C A MMGT1 Splice_Site p.X45_splice 0.05 TCGA-D3-A8GN-06 X 141290969 141290969 C T MAGEC2 Missense_Mutation p.E269K 0.09 deleterious(0.02) probably_damaging(0.911) TCGA-D3-A8GN-06 X 149013838 149013838 G A MAGEA8 Silent p.A264A 0.04 TCGA-D3-A8GN-06 X 150908082 150908082 C T CNGA2 Silent p.F84F 0.14 TCGA-D3-A8GN-06 X 151366218 151366218 C T GABRA3 Missense_Mutation p.R273Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GN-06 X 153208486 153208486 C T RENBP Missense_Mutation p.E170K 0.17 tolerated(0.49) benign(0.008) TCGA-D3-A8GN-06 X 18622824 18622824 T C CDKL5 Missense_Mutation p.Y594H 0.03 deleterious_low_confidence(0) benign(0.403) TCGA-D3-A8GN-06 X 27999300 27999300 C T DCAF8L1 Missense_Mutation p.G51D 0.12 tolerated_low_confidence(0.44) benign(0.003) TCGA-D3-A8GN-06 X 34148382 34148382 C T FAM47A Missense_Mutation p.E672K 0.09 tolerated(0.12) probably_damaging(0.953) TCGA-D3-A8GN-06 X 34149527 34149527 G A FAM47A Missense_Mutation p.P290L 0.08 deleterious(0.05) benign(0.017) TCGA-D3-A8GN-06 X 34961546 34961546 C T FAM47B Missense_Mutation p.R200C 0.10 tolerated(0.13) possibly_damaging(0.854) TCGA-D3-A8GN-06 X 46918068 46918068 C T JADE3 Silent p.F687F 0.15 TCGA-D3-A8GN-06 X 47098800 47098800 G A USP11 Missense_Mutation p.V156M 0.27 tolerated(0.06) possibly_damaging(0.522) TCGA-D3-A8GN-06 X 69720757 69720757 C T DLG3 Silent p.N755N 0.17 TCGA-D3-A8GN-06 X 71428125 71428125 G A ERCC6L Silent p.F164F 0.11 TCGA-D3-A8GN-06 X 73064753 73064753 G A XIST RNA 0.11 TCGA-D3-A8GN-06 X 75004350 75004350 G A MAGEE2 Silent p.L179L 0.11 TCGA-D3-A8GN-06 X 84600936 84600936 C T POF1B Missense_Mutation p.G218E 0.09 tolerated_low_confidence(0.9) benign(0.011) TCGA-D3-A8GN-06 X 99943260 99943260 C T SYTL4 Intron 0.22 TCGA-D3-A8GO-06 10 105938827 105938827 C T WDR96 Missense_Mutation p.R807K 0.26 tolerated(1) benign(0.009) TCGA-D3-A8GO-06 10 106675616 106675616 G A SORCS3 Missense_Mutation p.E241K 0.18 tolerated(0.17) benign(0.184) TCGA-D3-A8GO-06 10 125798090 125798090 G A CHST15 Silent p.F377F 0.15 TCGA-D3-A8GO-06 10 20500651 20500651 C T PLXDC2 Missense_Mutation p.P372L 0.14 tolerated(0.27) benign(0.393) TCGA-D3-A8GO-06 10 28274036 28274036 G A ARMC4 Missense_Mutation p.P163S 0.64 tolerated(0.37) benign(0.002) TCGA-D3-A8GO-06 10 30315788 30315788 C T KIAA1462 Missense_Mutation p.E1097K 0.29 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GO-06 10 30315789 30315789 C T KIAA1462 Silent p.V1096V 0.30 TCGA-D3-A8GO-06 10 49667783 49667783 G A ARHGAP22 Silent p.N217N 0.23 TCGA-D3-A8GO-06 10 50121467 50121467 G A LRRC18 Missense_Mutation p.S245F 0.22 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 10 70451473 70451473 C T TET1 Missense_Mutation p.P2105S 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 10 70992862 70992862 C A HKDC1 Missense_Mutation p.F156L 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-D3-A8GO-06 10 71008324 71008324 C T HKDC1 Silent p.I470I 0.20 TCGA-D3-A8GO-06 10 73206137 73206137 G A CDH23 Missense_Mutation p.E44K 0.23 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GO-06 10 75525286 75525286 C T SEC24C Silent p.F435F 0.45 TCGA-D3-A8GO-06 10 75548448 75548448 G T ZSWIM8 Missense_Mutation p.V77L 0.10 deleterious(0.02) probably_damaging(0.949) TCGA-D3-A8GO-06 10 81701813 81701813 G A SFTPD Silent p.A149A 0.24 TCGA-D3-A8GO-06 10 85991681 85991681 C T LRIT1 3'UTR 0.29 TCGA-D3-A8GO-06 10 89692948 89692949 - T PTEN Frame_Shift_Ins p.L146Ffs*34 0.20 TCGA-D3-A8GO-06 10 91371471 91371471 G A PANK1 Silent p.F346F 0.28 TCGA-D3-A8GO-06 10 98108058 98108058 G A OPALIN Silent p.P79P 0.24 TCGA-D3-A8GO-06 10 99350200 99350200 C T C10orf62 Silent p.F182F 0.28 TCGA-D3-A8GO-06 11 100169992 100169992 C T CNTN5 Silent p.S828S 0.12 TCGA-D3-A8GO-06 11 106810842 106810842 C T GUCY1A2 Missense_Mutation p.E184K 0.38 deleterious(0.03) benign(0.062) TCGA-D3-A8GO-06 11 110007419 110007420 - A ZC3H12C Frame_Shift_Ins p.N20Kfs*10 0.22 TCGA-D3-A8GO-06 11 114182853 114182853 G A NNMT Missense_Mutation p.G150E 0.20 tolerated(0.4) benign(0.021) TCGA-D3-A8GO-06 11 119029600 119029600 G A ABCG4 Silent p.A466A 0.14 TCGA-D3-A8GO-06 11 121414377 121414377 G A SORL1 Silent p.S602S 0.34 TCGA-D3-A8GO-06 11 121498269 121498269 G A SORL1 Missense_Mutation p.D2124N 0.23 tolerated(0.34) benign(0.002) TCGA-D3-A8GO-06 11 124121043 124121043 C T OR8G1 Silent p.I207I 0.28 TCGA-D3-A8GO-06 11 124189405 124189405 G A OR8D2 Missense_Mutation p.S230F 0.13 deleterious(0) benign(0.017) TCGA-D3-A8GO-06 11 124440288 124440288 C T OR8A1 Silent p.I108I 0.10 TCGA-D3-A8GO-06 11 1642809 1642809 G A KRTAP5-4 Missense_Mutation p.S172L 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GO-06 11 18754793 18754793 C T PTPN5 Missense_Mutation p.E403K 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 11 34492528 34492528 C T CAT Silent p.H486H 0.23 TCGA-D3-A8GO-06 11 35313999 35313999 A G SLC1A2 Missense_Mutation p.V309A 0.31 deleterious(0.03) possibly_damaging(0.714) TCGA-D3-A8GO-06 11 45928477 45928477 G A C11orf94 Missense_Mutation p.P40S 0.12 tolerated(0.11) probably_damaging(0.998) TCGA-D3-A8GO-06 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.12 TCGA-D3-A8GO-06 11 47444465 47444465 G A PSMC3 Silent p.I217I 0.11 TCGA-D3-A8GO-06 11 48186036 48186036 G A PTPRJ Missense_Mutation p.R1275Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GO-06 11 48285661 48285661 C T OR4X1 Silent p.S83S 0.18 TCGA-D3-A8GO-06 11 4936092 4936092 G A OR51G2 Missense_Mutation p.R268C 0.25 deleterious(0) benign(0.032) TCGA-D3-A8GO-06 11 5275685 5275685 G A HBG2 Missense_Mutation p.S51F 0.18 deleterious(0) possibly_damaging(0.493) TCGA-D3-A8GO-06 11 5364617 5364617 G A OR51B5 Silent p.L46L 0.13 TCGA-D3-A8GO-06 11 55418378 55418378 C T OR4S2 5'Flank 0.57 TCGA-D3-A8GO-06 11 55703616 55703616 G A OR5I1 Silent p.F87F 0.20 TCGA-D3-A8GO-06 11 55890188 55890188 C T OR8H3 Missense_Mutation p.L114F 0.15 deleterious(0.02) benign(0.216) TCGA-D3-A8GO-06 11 56058246 56058246 G A OR8H1 Missense_Mutation p.A98V 0.12 tolerated(0.24) benign(0.001) TCGA-D3-A8GO-06 11 56344405 56344405 C T OR5M10 Missense_Mutation p.E265K 0.28 tolerated(0.32) benign(0.012) TCGA-D3-A8GO-06 11 56380844 56380844 C T OR5M1 Missense_Mutation p.M45I 0.31 tolerated(0.09) benign(0.005) TCGA-D3-A8GO-06 11 57003704 57003704 G A APLNR Silent p.L259L 0.33 TCGA-D3-A8GO-06 11 58206854 58206854 G A OR5B12 Silent p.Y257Y 0.26 TCGA-D3-A8GO-06 11 5878258 5878258 C T OR52E8 Silent p.R225R 0.33 TCGA-D3-A8GO-06 11 62286336 62286336 G A AHNAK Missense_Mutation p.P5185S 0.31 benign(0.329) TCGA-D3-A8GO-06 11 62297343 62297343 G A AHNAK Missense_Mutation p.P1516S 0.25 probably_damaging(0.999) TCGA-D3-A8GO-06 11 6235708 6235708 G A FAM160A2 Silent p.A844A 0.30 TCGA-D3-A8GO-06 11 65365994 65365994 G A MAP3K11 Missense_Mutation p.P771L 0.28 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-D3-A8GO-06 11 65423233 65423233 C T RELA Missense_Mutation p.G320E 0.29 deleterious(0.04) possibly_damaging(0.674) TCGA-D3-A8GO-06 11 67270174 67270174 C T PITPNM1 Missense_Mutation p.E32K 0.18 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GO-06 11 71941175 71941175 A T INPPL1 Missense_Mutation p.D317V 0.19 deleterious(0) possibly_damaging(0.648) TCGA-D3-A8GO-06 11 72406792 72406792 G A ARAP1 Missense_Mutation p.L1131F 0.17 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GO-06 11 74555305 74555305 G A XRRA1 Silent p.L643L 0.13 TCGA-D3-A8GO-06 11 76370699 76370699 G A LRRC32 Silent p.A646A 0.32 TCGA-D3-A8GO-06 11 7982758 7982758 C T NLRP10 Missense_Mutation p.S134N 0.18 deleterious(0.04) benign(0.408) TCGA-D3-A8GO-06 11 92714627 92714627 G C MTNR1B Missense_Mutation p.V80L 0.16 deleterious(0.01) possibly_damaging(0.609) TCGA-D3-A8GO-06 11 9522663 9522663 C T ZNF143 Silent p.F331F 0.11 TCGA-D3-A8GO-06 11 95521676 95521676 A T FAM76B Missense_Mutation p.F47I 0.13 deleterious(0) possibly_damaging(0.772) TCGA-D3-A8GO-06 11 9597594 9597594 C T WEE1 Missense_Mutation p.H246Y 0.12 deleterious(0.03) benign(0.438) TCGA-D3-A8GO-06 12 100813655 100813655 C T SLC17A8 Silent p.I496I 0.22 TCGA-D3-A8GO-06 12 101767400 101767400 C T UTP20 Missense_Mutation p.P2329L 0.13 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GO-06 12 10279286 10279286 C T CLEC7A Missense_Mutation p.G75E 0.14 tolerated(0.21) benign(0.179) TCGA-D3-A8GO-06 12 109278843 109278843 G A DAO Missense_Mutation p.E21K 0.29 tolerated(0.1) benign(0.324) TCGA-D3-A8GO-06 12 109625869 109625869 T C ACACB Silent p.G682G 0.09 TCGA-D3-A8GO-06 12 109994750 109994750 G A MMAB 3'UTR 0.12 TCGA-D3-A8GO-06 12 113382450 113382450 C T OAS3 Silent p.Y210Y 0.27 TCGA-D3-A8GO-06 12 119540081 119540081 G A SRRM4 Missense_Mutation p.G58R 0.14 tolerated_low_confidence(0.25) unknown(0) TCGA-D3-A8GO-06 12 120287989 120287989 G A CIT Missense_Mutation p.H169Y 0.16 deleterious(0) benign(0.004) TCGA-D3-A8GO-06 12 13240932 13240932 G A GSG1 Silent p.F158F 0.38 TCGA-D3-A8GO-06 12 1755151 1755151 C T WNT5B Silent p.T271T 0.33 TCGA-D3-A8GO-06 12 21459899 21459899 G A SLCO1A2 Missense_Mutation p.S120L 0.33 tolerated(0.14) benign(0.052) TCGA-D3-A8GO-06 12 21712093 21712093 G A GYS2 Missense_Mutation p.P414S 0.13 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 12 26753006 26753006 G A ITPR2 Missense_Mutation p.H1239Y 0.23 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GO-06 12 41966563 41966563 G A PDZRN4 Missense_Mutation p.G661E 0.28 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GO-06 12 43895992 43895992 G A ADAMTS20 Missense_Mutation p.S277L 0.19 tolerated(0.25) benign(0.039) TCGA-D3-A8GO-06 12 4737120 4737120 G A AKAP3 Silent p.I316I 0.25 TCGA-D3-A8GO-06 12 49332831 49332831 G A AC073610.5 Missense_Mutation p.R24C 0.30 tolerated(0.09) probably_damaging(0.942) TCGA-D3-A8GO-06 12 49444787 49444787 G A KMT2D Silent p.P893P 0.14 TCGA-D3-A8GO-06 12 50043607 50043607 C A FMNL3 Missense_Mutation p.R701L 0.26 tolerated(0.06) probably_damaging(0.991) TCGA-D3-A8GO-06 12 5020988 5020988 G C KCNA1 Missense_Mutation p.E148D 0.27 tolerated(0.23) benign(0.23) TCGA-D3-A8GO-06 12 51279325 51279325 C T TMPRSS12 Intron 0.30 TCGA-D3-A8GO-06 12 52681469 52681469 C A KRT81 Nonsense_Mutation p.E313* 0.21 TCGA-D3-A8GO-06 12 52941766 52941766 A G KRT71 Missense_Mutation p.F327L 0.18 tolerated(0.19) possibly_damaging(0.612) TCGA-D3-A8GO-06 12 55820153 55820153 G A OR6C76 Missense_Mutation p.G39E 0.15 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-D3-A8GO-06 12 57033926 57033926 C T ATP5B Silent p.T375T 0.11 TCGA-D3-A8GO-06 12 57167623 57167623 G A HSD17B6 5'UTR 0.07 TCGA-D3-A8GO-06 12 5724360 5724360 G A ANO2 Silent p.F640F 0.14 TCGA-D3-A8GO-06 12 57850679 57850679 C T INHBE 3'UTR 0.27 TCGA-D3-A8GO-06 12 64383792 64383792 G A SRGAP1 Silent p.L122L 0.27 TCGA-D3-A8GO-06 12 70989867 70989867 C T PTPRB Missense_Mutation p.G407E 0.17 tolerated(0.76) benign(0.001) TCGA-D3-A8GO-06 12 7170325 7170325 C T C1S Silent p.S115S 0.31 TCGA-D3-A8GO-06 12 7280969 7280969 T C RBP5 Missense_Mutation p.D40G 0.14 tolerated(0.06) probably_damaging(0.919) TCGA-D3-A8GO-06 12 75441937 75441937 C T KCNC2 Silent p.R592R 0.22 TCGA-D3-A8GO-06 12 79611355 79611355 C T SYT1 Missense_Mutation p.A19V 0.32 tolerated(0.23) possibly_damaging(0.499) TCGA-D3-A8GO-06 12 81545605 81545605 C T ACSS3 Intron 0.36 TCGA-D3-A8GO-06 12 86374104 86374104 C T MGAT4C Missense_Mutation p.E134K 0.28 tolerated(0.09) benign(0.444) TCGA-D3-A8GO-06 12 9161653 9161653 C T KLRG1 Missense_Mutation p.S147L 0.27 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GO-06 12 96104339 96104339 G A NTN4 Missense_Mutation p.R354C 0.30 tolerated(0.05) possibly_damaging(0.832) TCGA-D3-A8GO-06 13 103703688 103703688 C T SLC10A2 Nonsense_Mutation p.W227* 0.12 TCGA-D3-A8GO-06 13 103718381 103718381 G A SLC10A2 Silent p.L73L 0.26 TCGA-D3-A8GO-06 13 19748045 19748045 C T TUBA3C Silent p.V437V 0.27 TCGA-D3-A8GO-06 13 24893016 24893016 G A C1QTNF9 Missense_Mutation p.R76Q 0.16 tolerated(0.18) benign(0.007) TCGA-D3-A8GO-06 13 25356008 25356008 G A RNF17 Silent p.T179T 0.22 TCGA-D3-A8GO-06 13 28004696 28004696 C T GTF3A Silent p.T142T 0.23 TCGA-D3-A8GO-06 13 29599873 29599873 G A MTUS2 Silent p.R356R 0.24 TCGA-D3-A8GO-06 13 32783072 32783072 C T FRY Silent p.I1367I 0.19 TCGA-D3-A8GO-06 13 33634902 33634902 G A KL Silent p.G562G 0.22 TCGA-D3-A8GO-06 13 33634903 33634903 G A KL Missense_Mutation p.V563I 0.22 tolerated(0.09) benign(0.103) TCGA-D3-A8GO-06 13 35738585 35738585 A G NBEA Missense_Mutation p.D1391G 0.22 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GO-06 13 39613780 39613780 C T NHLRC3 Missense_Mutation p.T106I 0.21 deleterious(0.05) benign(0.393) TCGA-D3-A8GO-06 13 45978503 45978503 C T SLC25A30 Missense_Mutation p.V118I 0.18 tolerated(0.07) benign(0.035) TCGA-D3-A8GO-06 13 49884915 49884915 G A CAB39L 3'UTR 0.24 TCGA-D3-A8GO-06 13 52854826 52854826 C T RP11-248G5.8 RNA 0.07 TCGA-D3-A8GO-06 13 77667392 77667392 T A MYCBP2 Silent p.T3387T 0.25 TCGA-D3-A8GO-06 13 84453995 84453995 C T SLITRK1 Missense_Mutation p.E550K 0.31 tolerated(0.16) benign(0.001) TCGA-D3-A8GO-06 13 86370073 86370073 G A SLITRK6 Missense_Mutation p.R191C 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 13 95248386 95248386 G A TGDS Missense_Mutation p.S2L 0.18 deleterious_low_confidence(0) benign(0.011) TCGA-D3-A8GO-06 13 99947225 99947225 G A GPR183 3'UTR 0.26 TCGA-D3-A8GO-06 14 107179223 107179223 G A IGHV2-70 Missense_Mutation p.P14S 0.45 deleterious(0.05) probably_damaging(0.996) TCGA-D3-A8GO-06 14 20502330 20502330 C T OR4K13 Silent p.Q196Q 0.23 TCGA-D3-A8GO-06 14 24877634 24877634 G A NYNRIN Missense_Mutation p.R253K 0.15 tolerated_low_confidence(0.22) benign(0) TCGA-D3-A8GO-06 14 38724166 38724166 C T CLEC14A Silent p.T354T 0.22 TCGA-D3-A8GO-06 14 67525607 67525607 C T GPHN Intron 0.30 TCGA-D3-A8GO-06 14 68029586 68029586 C T PLEKHH1 Missense_Mutation p.P413L 0.19 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GO-06 14 73739234 73739234 G A PAPLN Silent p.R1206R 0.14 TCGA-D3-A8GO-06 14 74825433 74825433 G A VRTN Silent p.T649T 0.26 TCGA-D3-A8GO-06 14 91360817 91360817 A T RPS6KA5 Silent p.L528L 0.39 TCGA-D3-A8GO-06 14 92055980 92055980 G A CATSPERB Missense_Mutation p.P952S 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 14 95081045 95081045 G - SERPINA3 Frame_Shift_Del p.A91Pfs*6 0.21 TCGA-D3-A8GO-06 15 101813059 101813059 A G VIMP Missense_Mutation p.Y163H 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 15 102346015 102346015 C T OR4F6 Silent p.F31F 0.32 TCGA-D3-A8GO-06 15 22369154 22369154 C T OR4M2 Silent p.F193F 0.13 TCGA-D3-A8GO-06 15 22383237 22383237 C T OR4N4 Silent p.I255I 0.11 TCGA-D3-A8GO-06 15 22845802 22845802 C T TUBGCP5 Silent p.V221V 0.12 TCGA-D3-A8GO-06 15 25475847 25475847 C T SNORD115-33 5'Flank 0.18 TCGA-D3-A8GO-06 15 33999248 33999248 C T RYR3 Silent p.F2204F 0.23 TCGA-D3-A8GO-06 15 34102698 34102698 G A RYR3 Missense_Mutation p.E3349K 0.21 benign(0.299) TCGA-D3-A8GO-06 15 38229154 38229154 G A TMCO5A Missense_Mutation p.E83K 0.19 tolerated(0.79) possibly_damaging(0.757) TCGA-D3-A8GO-06 15 38234548 38234548 G A TMCO5A Intron 0.36 TCGA-D3-A8GO-06 15 40587426 40587426 G A PLCB2 Missense_Mutation p.S586F 0.21 deleterious(0) probably_damaging(0.932) TCGA-D3-A8GO-06 15 43739667 43739667 G A TP53BP1 Silent p.F911F 0.25 TCGA-D3-A8GO-06 15 43818538 43818538 C T MAP1A Silent p.L1623L 0.30 TCGA-D3-A8GO-06 15 44913963 44913963 G A SPG11 Missense_Mutation p.P872S 0.20 tolerated(0.89) benign(0.008) TCGA-D3-A8GO-06 15 48429089 48429089 G A SLC24A5 Missense_Mutation p.G267E 0.18 deleterious(0.01) benign(0.052) TCGA-D3-A8GO-06 15 54307832 54307832 A G UNC13C Missense_Mutation p.E911G 0.19 tolerated_low_confidence(0.08) benign(0.004) TCGA-D3-A8GO-06 15 56970876 56970876 G A ZNF280D Missense_Mutation p.P383L 0.29 tolerated(0.1) benign(0.003) TCGA-D3-A8GO-06 15 56981277 56981277 G A ZNF280D Missense_Mutation p.H248Y 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-D3-A8GO-06 15 64915034 64915034 C T ZNF609 Silent p.S252S 0.23 TCGA-D3-A8GO-06 15 65748691 65748691 G A DPP8 Missense_Mutation p.R680W 0.20 deleterious(0) possibly_damaging(0.708) TCGA-D3-A8GO-06 15 69327719 69327719 C T NOX5 Missense_Mutation p.T294I 0.19 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 15 74472302 74472302 G A STRA6 3'Flank 0.32 TCGA-D3-A8GO-06 15 75909872 75909872 G A SNUPN Silent p.N60N 0.31 TCGA-D3-A8GO-06 15 76019822 76019822 A G ODF3L1 Missense_Mutation p.T256A 0.30 deleterious(0.04) benign(0.303) TCGA-D3-A8GO-06 15 77906469 77906469 C T LINGO1 Missense_Mutation p.E594K 0.30 tolerated(0.23) benign(0.201) TCGA-D3-A8GO-06 15 78782989 78782989 T G IREB2 Missense_Mutation p.I737S 0.28 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GO-06 15 84245353 84245353 G A SH3GL3 Missense_Mutation p.E162K 0.39 tolerated(0.12) probably_damaging(0.914) TCGA-D3-A8GO-06 15 90631702 90631702 G A IDH2 Silent p.A189A 0.25 TCGA-D3-A8GO-06 15 90814984 90814984 C T NGRN Silent p.F280F 0.32 TCGA-D3-A8GO-06 15 97326868 97326868 G A SPATA8 5'UTR 0.20 TCGA-D3-A8GO-06 16 10641448 10641448 G A EMP2 Silent p.I9I 0.16 TCGA-D3-A8GO-06 16 14935246 14935246 C T NOMO1 Missense_Mutation p.P95S 0.29 deleterious(0) possibly_damaging(0.666) TCGA-D3-A8GO-06 16 16271317 16271317 C T ABCC6 Missense_Mutation p.G861E 0.27 tolerated(0.86) benign(0.005) TCGA-D3-A8GO-06 16 1652541 1652541 G A IFT140 Silent p.L67L 0.27 TCGA-D3-A8GO-06 16 1894948 1894948 G C MEIOB Missense_Mutation p.N265K 0.20 deleterious(0.04) benign(0.049) TCGA-D3-A8GO-06 16 20432676 20432676 C T ACSM5 Silent p.V240V 0.15 TCGA-D3-A8GO-06 16 20576002 20576002 C T ACSM2B Missense_Mutation p.D56N 0.27 tolerated(0.14) benign(0.001) TCGA-D3-A8GO-06 16 2134515 2134515 C T TSC2 Missense_Mutation p.S1431L 0.19 tolerated(0.37) benign(0) TCGA-D3-A8GO-06 16 23478941 23478941 G A GGA2 Silent p.F604F 0.33 TCGA-D3-A8GO-06 16 29825916 29825916 C T PRRT2 Missense_Mutation p.P381L 0.31 tolerated_low_confidence(0.38) unknown(0) TCGA-D3-A8GO-06 16 31332864 31332864 G A ITGAM Missense_Mutation p.D641N 0.22 tolerated(0.12) benign(0.012) TCGA-D3-A8GO-06 16 4787918 4787918 G A C16orf71 Missense_Mutation p.V83I 0.22 tolerated(0.17) benign(0.037) TCGA-D3-A8GO-06 16 53191358 53191358 C T CHD9 Nonsense_Mutation p.Q453* 0.27 TCGA-D3-A8GO-06 16 53636034 53636034 G A RPGRIP1L Missense_Mutation p.A1301V 0.30 tolerated(0.11) possibly_damaging(0.831) TCGA-D3-A8GO-06 16 55729299 55729299 G A SLC6A2 Missense_Mutation p.D378N 0.19 deleterious(0.04) benign(0.33) TCGA-D3-A8GO-06 16 57741457 57741457 C T CCDC135 Missense_Mutation p.P315L 0.22 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GO-06 16 58031015 58031015 G A ZNF319 Silent p.H385H 0.19 TCGA-D3-A8GO-06 16 65016027 65016027 G A CDH11 Nonsense_Mutation p.Q393* 0.26 TCGA-D3-A8GO-06 16 67320389 67320389 C T PLEKHG4 Silent p.S858S 0.27 TCGA-D3-A8GO-06 16 67333551 67333551 C T KCTD19 Intron 0.20 TCGA-D3-A8GO-06 16 68592388 68592388 C T ZFP90 Missense_Mutation p.S58F 0.22 tolerated(0.06) possibly_damaging(0.723) TCGA-D3-A8GO-06 16 69681359 69681359 C T NFAT5 Missense_Mutation p.P228S 0.19 probably_damaging(0.998) TCGA-D3-A8GO-06 16 70287195 70287195 G A AARS Silent p.I899I 0.24 TCGA-D3-A8GO-06 16 7714948 7714948 G A RBFOX1 Intron 0.30 TCGA-D3-A8GO-06 16 77325301 77325301 C T ADAMTS18 Silent p.L1088L 0.26 TCGA-D3-A8GO-06 16 85111113 85111113 G A KIAA0513 Nonsense_Mutation p.W219* 0.22 TCGA-D3-A8GO-06 16 86602492 86602492 C T FOXC2 3'UTR 0.29 TCGA-D3-A8GO-06 16 8862077 8862077 C T ABAT Missense_Mutation p.L211F 0.14 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GO-06 16 88666313 88666313 C T ZC3H18 Nonsense_Mutation p.R349* 0.30 TCGA-D3-A8GO-06 16 9857717 9857717 G A GRIN2A Silent p.F1228F 0.17 TCGA-D3-A8GO-06 17 10235428 10235428 G A MYH13 Silent p.F762F 0.28 TCGA-D3-A8GO-06 17 10258294 10258294 G A MYH13 Silent p.S273S 0.46 TCGA-D3-A8GO-06 17 10304367 10304367 C T MYH8 Missense_Mutation p.E1084K 0.22 tolerated(1) benign(0) TCGA-D3-A8GO-06 17 10317330 10317330 G A MYH8 Missense_Mutation p.P346S 0.29 tolerated(0.41) benign(0.001) TCGA-D3-A8GO-06 17 10430261 10430261 C T MYH2 Silent p.E1328E 0.13 TCGA-D3-A8GO-06 17 11597290 11597290 G A DNAH9 Missense_Mutation p.E1574K 0.22 benign(0.052) TCGA-D3-A8GO-06 17 11660895 11660895 G A DNAH9 Nonsense_Mutation p.W2294* 0.29 TCGA-D3-A8GO-06 17 11872814 11872814 G A DNAH9 Silent p.L4477L 0.17 TCGA-D3-A8GO-06 17 11872815 11872815 G A DNAH9 Missense_Mutation p.A4478T 0.17 possibly_damaging(0.9) TCGA-D3-A8GO-06 17 12626292 12626292 C T MYOCD Missense_Mutation p.P128S 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GO-06 17 1489264 1489264 C T SLC43A2 Nonsense_Mutation p.W387* 0.25 TCGA-D3-A8GO-06 17 15492528 15492528 G A CDRT1 Missense_Mutation p.H674Y 0.11 tolerated(0.19) benign(0) TCGA-D3-A8GO-06 17 16455373 16455373 G A ZNF287 Nonsense_Mutation p.Q695* 0.08 TCGA-D3-A8GO-06 17 16875331 16875331 C T TNFRSF13B Missense_Mutation p.R20H 0.08 tolerated_low_confidence(0.61) benign(0) TCGA-D3-A8GO-06 17 17106387 17106387 G A PLD6 Silent p.D151D 0.36 TCGA-D3-A8GO-06 17 19186593 19186593 C T EPN2 Missense_Mutation p.S54L 0.29 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GO-06 17 2808632 2808632 C T RAP1GAP2 Silent p.S45S 0.28 TCGA-D3-A8GO-06 17 2966780 2966780 C T OR1D5 Missense_Mutation p.G41E 0.15 deleterious(0.01) benign(0.434) TCGA-D3-A8GO-06 17 2966824 2966824 G A OR1D5 Silent p.I26I 0.21 TCGA-D3-A8GO-06 17 30357684 30357684 C T LRRC37B Silent p.S611S 0.14 TCGA-D3-A8GO-06 17 30665331 30665331 G A C17orf75 Silent p.F129F 0.16 TCGA-D3-A8GO-06 17 34893909 34893909 T G PIGW Missense_Mutation p.V320G 0.30 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GO-06 17 3514110 3514110 G T SHPK Missense_Mutation p.S394Y 0.20 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GO-06 17 37826670 37826670 C A PNMT 3'UTR 0.27 TCGA-D3-A8GO-06 17 39635738 39635738 G A KRT35 Missense_Mutation p.S191F 0.23 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A8GO-06 17 40269963 40269963 G A KAT2A Missense_Mutation p.S418F 0.31 tolerated(0.2) benign(0.001) TCGA-D3-A8GO-06 17 41020211 41020211 C A AOC4P RNA 0.29 TCGA-D3-A8GO-06 17 41719292 41719292 G A MEOX1 Missense_Mutation p.P251S 0.19 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GO-06 17 42272204 42272204 G A ATXN7L3 Silent p.S230S 0.29 TCGA-D3-A8GO-06 17 43474363 43474363 C T ARHGAP27 Missense_Mutation p.E283K 0.26 deleterious(0.04) benign(0.304) TCGA-D3-A8GO-06 17 45369710 45369710 G A ITGB3 Missense_Mutation p.G489E 0.30 tolerated(0.4) benign(0.001) TCGA-D3-A8GO-06 17 45369711 45369711 G A ITGB3 Silent p.G489G 0.32 TCGA-D3-A8GO-06 17 4576329 4576329 G A PELP1 Missense_Mutation p.P653S 0.07 possibly_damaging(0.641) TCGA-D3-A8GO-06 17 47696382 47696382 G A SPOP Silent p.N147N 0.18 TCGA-D3-A8GO-06 17 47696383 47696383 T G SPOP Missense_Mutation p.N147T 0.18 tolerated(0.06) benign(0.031) TCGA-D3-A8GO-06 17 59560743 59560743 G A TBX4 Missense_Mutation p.E502K 0.29 deleterious_low_confidence(0.02) benign(0.219) TCGA-D3-A8GO-06 17 60526236 60526236 C T METTL2A 3'UTR 0.44 TCGA-D3-A8GO-06 17 61611486 61611486 C T KCNH6 Silent p.L305L 0.15 TCGA-D3-A8GO-06 17 61623134 61623134 G A KCNH6 Silent p.L952L 0.17 TCGA-D3-A8GO-06 17 62125256 62125256 A T ERN1 Missense_Mutation p.F831I 0.10 tolerated(0.06) benign(0.378) TCGA-D3-A8GO-06 17 66873760 66873760 C T ABCA8 Missense_Mutation p.E1327K 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-D3-A8GO-06 17 67522804 67522804 C T MAP2K6 Missense_Mutation p.P279S 0.27 tolerated(0.23) probably_damaging(0.967) TCGA-D3-A8GO-06 17 7100367 7100367 A T DLG4 Nonsense_Mutation p.Y307* 0.24 TCGA-D3-A8GO-06 17 72527456 72527456 G A CD300LB Missense_Mutation p.L49F 0.41 tolerated(0.31) possibly_damaging(0.664) TCGA-D3-A8GO-06 17 72791745 72791745 C G TMEM104 Missense_Mutation p.R204G 0.25 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GO-06 17 73571034 73571034 G A LLGL2 3'UTR 0.12 TCGA-D3-A8GO-06 17 73998479 73998479 C T CDK3 Silent p.L156L 0.21 TCGA-D3-A8GO-06 17 74154480 74154480 G A RNF157 Silent p.L469L 0.17 TCGA-D3-A8GO-06 17 7630445 7630445 C T DNAH2 Silent p.P78P 0.05 TCGA-D3-A8GO-06 17 76455952 76455952 G A DNAH17 Silent p.I3175I 0.29 TCGA-D3-A8GO-06 17 7696306 7696306 C T DNAH2 Missense_Mutation p.S2451F 0.30 probably_damaging(0.992) TCGA-D3-A8GO-06 17 7700997 7700997 G A DNAH2 Splice_Site p.X2694_splice 0.09 TCGA-D3-A8GO-06 17 9580108 9580108 C T USP43 Silent p.F293F 0.67 TCGA-D3-A8GO-06 18 2892338 2892338 G A EMILIN2 Nonsense_Mutation p.W738* 0.26 TCGA-D3-A8GO-06 18 28983562 28983562 G A DSG4 Missense_Mutation p.G534E 0.33 tolerated(0.11) benign(0.015) TCGA-D3-A8GO-06 18 3457593 3457594 - A TGIF1 Frame_Shift_Ins p.P289Afs*62 0.25 TCGA-D3-A8GO-06 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.03 deleterious(0.03) probably_damaging(0.971) TCGA-D3-A8GO-06 18 51880430 51880430 C T STARD6 Missense_Mutation p.G45E 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 18 72913596 72913596 G A ZADH2 Silent p.F303F 0.31 TCGA-D3-A8GO-06 18 74624222 74624222 C T ZNF236 Missense_Mutation p.S941L 0.47 tolerated(0.1) benign(0.019) TCGA-D3-A8GO-06 18 9216853 9216853 T C ANKRD12 Silent p.D250D 0.33 TCGA-D3-A8GO-06 19 12297534 12297534 A G ZNF136 Missense_Mutation p.Q114R 0.08 tolerated(0.11) benign(0.035) TCGA-D3-A8GO-06 19 15052519 15052519 C T OR7C2 Silent p.F73F 0.08 TCGA-D3-A8GO-06 19 16268126 16268126 C A HSH2D 3'Flank 0.16 TCGA-D3-A8GO-06 19 16860991 16860991 G A NWD1 Missense_Mutation p.R513K 0.27 deleterious(0.05) probably_damaging(0.97) TCGA-D3-A8GO-06 19 17783244 17783244 C T UNC13A Nonsense_Mutation p.W71* 0.17 TCGA-D3-A8GO-06 19 19626977 19626977 C T NDUFA13 5'UTR 0.32 TCGA-D3-A8GO-06 19 19626978 19626978 C T NDUFA13 5'UTR 0.31 TCGA-D3-A8GO-06 19 22940486 22940486 A G ZNF99 Missense_Mutation p.F742S 0.14 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 19 22941674 22941674 C T ZNF99 Missense_Mutation p.C346Y 0.24 deleterious(0) possibly_damaging(0.653) TCGA-D3-A8GO-06 19 33183234 33183234 C T NUDT19 Missense_Mutation p.A123V 0.15 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 19 33968992 33968992 C T PEPD Missense_Mutation p.E170K 0.29 tolerated(1) benign(0) TCGA-D3-A8GO-06 19 3546412 3546412 G A MFSD12 Silent p.F345F 0.50 TCGA-D3-A8GO-06 19 36258807 36258807 C T C19orf55 Missense_Mutation p.P354S 0.26 deleterious(0.04) benign(0.295) TCGA-D3-A8GO-06 19 36297694 36297694 C T PRODH2 Silent p.A315A 0.35 TCGA-D3-A8GO-06 19 36321787 36321787 G A NPHS1 Missense_Mutation p.P1185S 0.15 tolerated(0.08) benign(0.205) TCGA-D3-A8GO-06 19 37117419 37117419 C T ZNF382 Missense_Mutation p.A207V 0.32 tolerated(0.66) benign(0.003) TCGA-D3-A8GO-06 19 37310579 37310579 T C ZNF790 Missense_Mutation p.K223E 0.14 tolerated(1) possibly_damaging(0.894) TCGA-D3-A8GO-06 19 3778218 3778218 G A MATK Missense_Mutation p.A497V 0.27 tolerated_low_confidence(0.13) benign(0.001) TCGA-D3-A8GO-06 19 39380332 39380332 G T SIRT2 Missense_Mutation p.F143L 0.26 tolerated(0.09) benign(0.136) TCGA-D3-A8GO-06 19 39805367 39805367 C T LRFN1 Missense_Mutation p.G204R 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 19 39966970 39966970 C T SUPT5H Silent p.V1065V 0.36 TCGA-D3-A8GO-06 19 39966971 39966971 C T SUPT5H Missense_Mutation p.R1066C 0.38 deleterious(0) benign(0.037) TCGA-D3-A8GO-06 19 40964397 40964397 G A BLVRB Silent p.P45P 0.23 TCGA-D3-A8GO-06 19 41133086 41133086 C T LTBP4 Missense_Mutation p.P1464S 0.14 tolerated(0.15) possibly_damaging(0.893) TCGA-D3-A8GO-06 19 4174811 4174811 G A SIRT6 Missense_Mutation p.R291C 0.62 deleterious(0) possibly_damaging(0.824) TCGA-D3-A8GO-06 19 42342965 42342965 G A LYPD4 Silent p.F67F 0.11 TCGA-D3-A8GO-06 19 42879952 42879952 C T MEGF8 Silent p.V2454V 0.12 TCGA-D3-A8GO-06 19 4292715 4292715 G A TMIGD2 Missense_Mutation p.P244S 0.34 tolerated(0.25) benign(0.036) TCGA-D3-A8GO-06 19 44536997 44536997 C T ZNF222 Silent p.L430L 0.12 TCGA-D3-A8GO-06 19 4538313 4538313 C T LRG1 Missense_Mutation p.G228E 0.26 tolerated(0.75) benign(0.019) TCGA-D3-A8GO-06 19 4538456 4538456 G A LRG1 Silent p.P180P 0.20 TCGA-D3-A8GO-06 19 46003763 46003763 G A PPM1N Silent p.R369R 0.16 TCGA-D3-A8GO-06 19 46838167 46838167 C T HIF3A Silent p.F612F 0.27 TCGA-D3-A8GO-06 19 48800486 48800486 G A CCDC114 Missense_Mutation p.T587I 0.16 deleterious(0.03) benign(0.042) TCGA-D3-A8GO-06 19 49107054 49107054 G A FAM83E Silent p.L291L 0.39 TCGA-D3-A8GO-06 19 51021473 51021473 G A LRRC4B Silent p.P499P 0.18 TCGA-D3-A8GO-06 19 51361307 51361307 C T KLK3 Missense_Mutation p.R77W 0.31 tolerated(0.06) possibly_damaging(0.753) TCGA-D3-A8GO-06 19 51503866 51503866 C T KLK8 Missense_Mutation p.R60Q 0.26 tolerated(0.24) benign(0.001) TCGA-D3-A8GO-06 19 52148749 52148749 G A SIGLEC14 Silent p.F245F 0.33 TCGA-D3-A8GO-06 19 52149189 52149189 C T SIGLEC14 Silent p.G182G 0.27 TCGA-D3-A8GO-06 19 53994194 53994194 C T ZNF813 Silent p.I236I 0.30 TCGA-D3-A8GO-06 19 54194168 54194168 C T MIR520A RNA 0.32 TCGA-D3-A8GO-06 19 54603045 54603045 G A OSCAR Missense_Mutation p.P22S 0.16 deleterious(0.04) benign(0.031) TCGA-D3-A8GO-06 19 55294378 55294378 C A KIR2DL1 Missense_Mutation p.N240K 0.25 tolerated(0.96) benign(0.05) TCGA-D3-A8GO-06 19 55325186 55325186 G A KIR2DL4 Missense_Mutation p.V250M 0.12 tolerated(0.06) possibly_damaging(0.511) TCGA-D3-A8GO-06 19 55993130 55993130 C T ZNF628 Silent p.N190N 0.24 TCGA-D3-A8GO-06 19 56320854 56320854 A G NLRP11 Silent p.L374L 0.17 TCGA-D3-A8GO-06 19 56329343 56329343 C T NLRP11 Nonsense_Mutation p.W66* 0.27 TCGA-D3-A8GO-06 19 56467167 56467167 C T NLRP8 Silent p.F581F 0.07 TCGA-D3-A8GO-06 19 56704287 56704287 C T ZSCAN5B Missense_Mutation p.M45I 0.30 tolerated(0.12) benign(0.012) TCGA-D3-A8GO-06 19 5844153 5844153 G C FUT3 Missense_Mutation p.T233S 0.15 tolerated(0.6) benign(0.022) TCGA-D3-A8GO-06 19 7075683 7075683 C T ZNF557 Missense_Mutation p.P17S 0.29 tolerated(0.39) possibly_damaging(0.803) TCGA-D3-A8GO-06 19 7535057 7535057 C T ARHGEF18 Missense_Mutation p.S1132F 0.13 tolerated(0.07) benign(0.143) TCGA-D3-A8GO-06 19 758544 758544 C T MISP Missense_Mutation p.A533V 0.26 deleterious(0.01) possibly_damaging(0.595) TCGA-D3-A8GO-06 19 7754144 7754144 C T FCER2 Missense_Mutation p.G301R 0.47 tolerated_low_confidence(0.11) benign(0.004) TCGA-D3-A8GO-06 19 8604900 8604900 C T MYO1F Silent p.R541R 0.26 TCGA-D3-A8GO-06 19 8842008 8842008 C T OR2Z1 Silent p.I206I 0.27 TCGA-D3-A8GO-06 19 9005225 9005225 G A MUC16 Silent p.F13284F 0.12 TCGA-D3-A8GO-06 19 9049316 9049316 G A MUC16 Missense_Mutation p.P10772L 0.12 benign(0.007) TCGA-D3-A8GO-06 19 9049777 9049777 G A MUC16 Silent p.F10618F 0.21 TCGA-D3-A8GO-06 19 9063086 9063086 G A MUC16 Silent p.T8120T 0.07 TCGA-D3-A8GO-06 19 9070389 9070389 G A MUC16 Missense_Mutation p.S5686L 0.08 unknown(0) TCGA-D3-A8GO-06 19 9073228 9073228 C T MUC16 Missense_Mutation p.D4740N 0.18 unknown(0) TCGA-D3-A8GO-06 19 9088103 9088103 T C MUC16 Missense_Mutation p.T1238A 0.28 unknown(0) TCGA-D3-A8GO-06 19 9213398 9213398 G A OR7G2 Silent p.I195I 0.22 TCGA-D3-A8GO-06 1 110170519 110170519 C T AMPD2 Silent p.I412I 0.35 TCGA-D3-A8GO-06 1 11078913 11078913 A T TARDBP Nonsense_Mutation p.K176* 0.11 TCGA-D3-A8GO-06 1 111825210 111825210 C T CHIAP2 RNA 0.29 TCGA-D3-A8GO-06 1 111957327 111957327 G A OVGP1 Missense_Mutation p.S599F 0.12 tolerated_low_confidence(0.13) benign(0.005) TCGA-D3-A8GO-06 1 112308796 112308796 C T DDX20 Missense_Mutation p.H584Y 0.09 tolerated(0.73) benign(0.002) TCGA-D3-A8GO-06 1 113460271 113460271 G A SLC16A1 Silent p.L253L 0.16 TCGA-D3-A8GO-06 1 114523916 114523916 G A OLFML3 Missense_Mutation p.R249Q 0.17 tolerated(0.25) benign(0.263) TCGA-D3-A8GO-06 1 115168221 115168221 C T DENND2C Missense_Mutation p.E129K 0.15 tolerated(1) benign(0.001) TCGA-D3-A8GO-06 1 11596444 11596444 G A PTCHD2 Missense_Mutation p.V1294I 0.22 tolerated(0.15) benign(0.391) TCGA-D3-A8GO-06 1 118166682 118166682 G A FAM46C 3'UTR 0.40 TCGA-D3-A8GO-06 1 118693207 118693207 C T SPAG17 Missense_Mutation p.A92T 0.25 tolerated(0.21) possibly_damaging(0.897) TCGA-D3-A8GO-06 1 12351136 12351136 G A VPS13D Missense_Mutation p.R1936Q 0.18 probably_damaging(0.967) TCGA-D3-A8GO-06 1 12351137 12351137 G A VPS13D Silent p.R1936R 0.19 TCGA-D3-A8GO-06 1 12439546 12439546 G A VPS13D Missense_Mutation p.E3696K 0.08 probably_damaging(0.982) TCGA-D3-A8GO-06 1 1278101 1278101 G A DVL1 Missense_Mutation p.L70F 0.10 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GO-06 1 1420511 1420511 C T ATAD3B Missense_Mutation p.S289F 0.29 deleterious(0.01) possibly_damaging(0.5) TCGA-D3-A8GO-06 1 145533475 145533475 G A ITGA10 Missense_Mutation p.R453Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 1 147380190 147380190 C T GJA8 Silent p.I36I 0.29 TCGA-D3-A8GO-06 1 1480328 1480328 G A SSU72 Silent p.P93P 0.22 TCGA-D3-A8GO-06 1 150444318 150444318 C T RPRD2 Missense_Mutation p.S965F 0.30 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-D3-A8GO-06 1 150933278 150933278 G T SETDB1 Nonsense_Mutation p.E914* 0.19 TCGA-D3-A8GO-06 1 151039956 151039956 G A MLLT11 Missense_Mutation p.E86K 0.29 deleterious(0.01) benign(0.266) TCGA-D3-A8GO-06 1 152325409 152325409 C T FLG2 Missense_Mutation p.G1618E 0.22 benign(0.4) TCGA-D3-A8GO-06 1 152382806 152382806 C T CRNN Missense_Mutation p.G251E 0.21 deleterious(0.04) benign(0.266) TCGA-D3-A8GO-06 1 152659663 152659663 G A LCE2B 3'UTR 0.18 TCGA-D3-A8GO-06 1 153659524 153659524 C T NPR1 Silent p.D632D 0.24 TCGA-D3-A8GO-06 1 153963240 153963240 T C RPS27 5'UTR 0.24 TCGA-D3-A8GO-06 1 156132784 156132784 G A SEMA4A Missense_Mutation p.D345N 0.22 tolerated(0.09) benign(0.35) TCGA-D3-A8GO-06 1 156144622 156144622 C T SEMA4A Missense_Mutation p.S442L 0.11 tolerated(0.82) benign(0.009) TCGA-D3-A8GO-06 1 156206095 156206095 C T PMF1 Intron 0.23 TCGA-D3-A8GO-06 1 158325272 158325272 G A CD1E Missense_Mutation p.E180K 0.24 tolerated(0.09) benign(0.012) TCGA-D3-A8GO-06 1 158390375 158390375 G A OR10K2 Silent p.F94F 0.19 TCGA-D3-A8GO-06 1 158390381 158390381 A T OR10K2 Silent p.I92I 0.19 TCGA-D3-A8GO-06 1 158604364 158604364 C T SPTA1 Missense_Mutation p.G1845E 0.25 tolerated(1) possibly_damaging(0.489) TCGA-D3-A8GO-06 1 158612330 158612330 C T SPTA1 Silent p.R1536R 0.23 TCGA-D3-A8GO-06 1 159275965 159275965 C T FCER1A Silent p.T173T 0.20 TCGA-D3-A8GO-06 1 159558199 159558199 G A APCS Missense_Mutation p.E125K 0.31 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GO-06 1 159683573 159683573 C T CRP Silent p.L139L 0.25 TCGA-D3-A8GO-06 1 159901677 159901677 G A IGSF9 Silent p.F429F 0.25 TCGA-D3-A8GO-06 1 160811679 160811679 G A CD244 Missense_Mutation p.S25L 0.16 deleterious(0.02) possibly_damaging(0.745) TCGA-D3-A8GO-06 1 166991216 166991216 G A MAEL 3'UTR 0.25 TCGA-D3-A8GO-06 1 167815390 167815390 G A ADCY10 Missense_Mutation p.P850L 0.30 deleterious(0) possibly_damaging(0.847) TCGA-D3-A8GO-06 1 173840241 173840241 C T ZBTB37 Missense_Mutation p.S293F 0.18 tolerated(0.58) possibly_damaging(0.466) TCGA-D3-A8GO-06 1 181741302 181741302 G A CACNA1E Missense_Mutation p.E1692K 0.26 tolerated(0.12) possibly_damaging(0.635) TCGA-D3-A8GO-06 1 184764157 184764157 C T FAM129A Missense_Mutation p.G914E 0.19 tolerated_low_confidence(1) benign(0.01) TCGA-D3-A8GO-06 1 186083118 186083118 A - HMCN1 Frame_Shift_Del p.N3714Tfs*2 0.10 TCGA-D3-A8GO-06 1 19433131 19433131 G A UBR4 Silent p.L4109L 0.10 TCGA-D3-A8GO-06 1 19433132 19433132 G A UBR4 Silent p.F4108F 0.09 TCGA-D3-A8GO-06 1 196977732 196977732 C T CFHR5 Silent p.F543F 0.20 TCGA-D3-A8GO-06 1 198498283 198498283 C T ATP6V1G3 Silent p.K37K 0.21 TCGA-D3-A8GO-06 1 200523673 200523673 A G KIF14 Missense_Mutation p.V1497A 0.18 tolerated(0.69) benign(0) TCGA-D3-A8GO-06 1 203465248 203465248 G A OPTC Missense_Mutation p.D39N 0.23 tolerated(0.28) benign(0.004) TCGA-D3-A8GO-06 1 205554035 205554035 G A MFSD4 Silent p.R297R 0.22 TCGA-D3-A8GO-06 1 210012389 210012389 C T DIEXF Missense_Mutation p.P400S 0.23 deleterious(0.02) benign(0.439) TCGA-D3-A8GO-06 1 210415264 210415264 C T SERTAD4 Missense_Mutation p.S218F 0.19 deleterious(0.02) benign(0.019) TCGA-D3-A8GO-06 1 213134602 213134602 C T VASH2 Intron 0.22 TCGA-D3-A8GO-06 1 214170398 214170398 C T PROX1 Missense_Mutation p.R174W 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 1 216262389 216262389 A T USH2A Silent p.A1617A 0.28 TCGA-D3-A8GO-06 1 220823975 220823975 C T MARK1 Missense_Mutation p.S495F 0.29 deleterious(0.01) benign(0.061) TCGA-D3-A8GO-06 1 223396785 223396785 G A SUSD4 Missense_Mutation p.S417L 0.23 tolerated(0.17) benign(0.342) TCGA-D3-A8GO-06 1 227935647 227935647 C T SNAP47 Silent p.I115I 0.21 TCGA-D3-A8GO-06 1 227935648 227935648 C T SNAP47 Silent p.L116L 0.21 TCGA-D3-A8GO-06 1 228495849 228495849 G A OBSCN Silent p.A5125A 0.27 TCGA-D3-A8GO-06 1 228496875 228496875 G A OBSCN Missense_Mutation p.R5229Q 0.50 benign(0.406) TCGA-D3-A8GO-06 1 233511777 233511777 C T MLK4 Silent p.S597S 0.32 TCGA-D3-A8GO-06 1 240601370 240601370 G A FMN2 Silent p.E1640E 0.22 TCGA-D3-A8GO-06 1 247464506 247464506 G A ZNF496 Missense_Mutation p.S360F 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A8GO-06 1 247751933 247751933 C T OR2G2 Missense_Mutation p.P91L 0.28 tolerated(0.06) benign(0.206) TCGA-D3-A8GO-06 1 247769613 247769613 C T OR2G3 Silent p.S242S 0.29 TCGA-D3-A8GO-06 1 248059530 248059530 C T OR2W3 Silent p.I214I 0.25 TCGA-D3-A8GO-06 1 248308935 248308935 G A OR2M5 Silent p.A162A 0.24 TCGA-D3-A8GO-06 1 249211626 249211626 C T PGBD2 Silent p.S281S 0.18 TCGA-D3-A8GO-06 1 28271811 28271811 G A SMPDL3B Missense_Mutation p.V44M 0.35 tolerated(0.08) possibly_damaging(0.877) TCGA-D3-A8GO-06 1 32751115 32751115 G A LCK Missense_Mutation p.G443E 0.11 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 1 34037153 34037153 C T CSMD2 Missense_Mutation p.D2648N 0.11 tolerated(1) benign(0.007) TCGA-D3-A8GO-06 1 34286133 34286133 C A CSMD2 Missense_Mutation p.G339V 0.09 tolerated(0.33) possibly_damaging(0.638) TCGA-D3-A8GO-06 1 34286134 34286134 C T CSMD2 Missense_Mutation p.G339R 0.09 tolerated(0.06) possibly_damaging(0.726) TCGA-D3-A8GO-06 1 43228000 43228000 G A LEPRE1 Silent p.P204P 0.15 TCGA-D3-A8GO-06 1 43803528 43803528 C T MPL Silent p.S3S 0.44 TCGA-D3-A8GO-06 1 44058142 44058142 C T PTPRF Silent p.F561F 0.14 TCGA-D3-A8GO-06 1 45295633 45295633 C T PTCH2 Missense_Mutation p.E295K 0.33 deleterious(0.01) possibly_damaging(0.589) TCGA-D3-A8GO-06 1 45798467 45798467 G T MUTYH Missense_Mutation p.R179S 0.10 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 1 52854222 52854222 C T ORC1 Silent p.E425E 0.25 TCGA-D3-A8GO-06 1 55145020 55145020 C T MROH7 Missense_Mutation p.P712S 0.20 tolerated(0.43) benign(0.006) TCGA-D3-A8GO-06 1 55277781 55277781 A T C1orf177 Silent p.R227R 0.09 TCGA-D3-A8GO-06 1 5964762 5964762 G A NPHP4 Silent p.V686V 0.12 TCGA-D3-A8GO-06 1 64114198 64114198 C T PGM1 Silent p.H403H 0.10 TCGA-D3-A8GO-06 1 66102605 66102605 G A LEPR Silent p.K1135K 0.19 TCGA-D3-A8GO-06 1 75097513 75097513 G A C1orf173 Missense_Mutation p.P235S 0.23 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GO-06 1 79093640 79093640 C T IFI44L Missense_Mutation p.H14Y 0.31 tolerated(0.05) benign(0.281) TCGA-D3-A8GO-06 1 87026026 87026026 G A CLCA4 Missense_Mutation p.E145K 0.33 tolerated(0.81) benign(0.219) TCGA-D3-A8GO-06 1 9714404 9714404 C T C1orf200 Missense_Mutation p.E31K 0.19 tolerated_low_confidence(0.9) benign(0.008) TCGA-D3-A8GO-06 20 1276964 1276964 C T SNPH Intron 0.36 TCGA-D3-A8GO-06 20 16729555 16729555 G A OTOR Silent p.P53P 0.17 TCGA-D3-A8GO-06 20 18491634 18491634 C T SEC23B Missense_Mutation p.P52L 0.22 deleterious(0.05) benign(0.1) TCGA-D3-A8GO-06 20 21224910 21224910 C T PLK1S1 RNA 0.22 TCGA-D3-A8GO-06 20 29960671 29960671 G A DEFB118 Missense_Mutation p.E24K 0.41 tolerated(0.47) possibly_damaging(0.636) TCGA-D3-A8GO-06 20 32349788 32349788 C T ZNF341 Silent p.T376T 0.17 TCGA-D3-A8GO-06 20 39978792 39978792 C T LPIN3 Missense_Mutation p.S286F 0.50 deleterious(0.02) benign(0.015) TCGA-D3-A8GO-06 20 40120376 40120376 C T CHD6 Silent p.L466L 0.18 TCGA-D3-A8GO-06 20 42169793 42169793 C T L3MBTL1 3'UTR 0.22 TCGA-D3-A8GO-06 20 42695467 42695467 C T TOX2 Missense_Mutation p.P485L 0.20 tolerated(0.1) benign(0.421) TCGA-D3-A8GO-06 20 43043167 43043167 G A HNF4A Silent p.G171G 0.17 TCGA-D3-A8GO-06 20 44184480 44184480 C T WFDC8 Missense_Mutation p.G102E 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 20 44683602 44683602 G A SLC12A5 Missense_Mutation p.M932I 0.34 tolerated(0.05) possibly_damaging(0.589) TCGA-D3-A8GO-06 20 49196259 49196259 C T PTPN1 Missense_Mutation p.S295F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GO-06 20 49196325 49196325 T C PTPN1 Missense_Mutation p.L317P 0.15 tolerated(0.33) benign(0.008) TCGA-D3-A8GO-06 20 49225180 49225180 G A FAM65C Silent p.I256I 0.23 TCGA-D3-A8GO-06 20 5154221 5154221 G A CDS2 Missense_Mutation p.S37N 0.43 tolerated(0.51) benign(0.031) TCGA-D3-A8GO-06 20 51871759 51871759 G A TSHZ2 Missense_Mutation p.V588I 0.19 tolerated(0.86) benign(0.004) TCGA-D3-A8GO-06 20 5283101 5283101 G A PROKR2 Missense_Mutation p.S247F 0.18 deleterious(0.02) possibly_damaging(0.633) TCGA-D3-A8GO-06 20 5903784 5903786 TAC CA CHGB Frame_Shift_Del p.Y332Qfs*14 0.26 TCGA-D3-A8GO-06 20 5903835 5903835 C T CHGB Missense_Mutation p.P349S 0.27 tolerated(0.45) benign(0.068) TCGA-D3-A8GO-06 20 5903836 5903836 C T CHGB Missense_Mutation p.P349L 0.27 tolerated(0.65) benign(0.037) TCGA-D3-A8GO-06 20 8770876 8770876 A G PLCB1 Missense_Mutation p.I1131V 0.43 tolerated(1) benign(0.015) TCGA-D3-A8GO-06 20 9561452 9561452 C T PAK7 Silent p.Q110Q 0.41 TCGA-D3-A8GO-06 21 10942741 10942741 C T TPTE Missense_Mutation p.G234R 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 21 10998332 10998332 C T TPTE RNA 0.24 TCGA-D3-A8GO-06 21 11014975 11014975 C T TPTE RNA 0.24 TCGA-D3-A8GO-06 21 11098758 11098758 C T BAGE2 RNA 0.10 TCGA-D3-A8GO-06 21 15882675 15882675 C T SAMSN1 Missense_Mutation p.D241N 0.29 deleterious(0) probably_damaging(0.933) TCGA-D3-A8GO-06 21 15882676 15882676 C T SAMSN1 Silent p.T240T 0.29 TCGA-D3-A8GO-06 21 32525408 32525408 T C TIAM1 Silent p.K1072K 0.33 TCGA-D3-A8GO-06 21 34924901 34924901 C T SON Missense_Mutation p.R1122C 0.27 possibly_damaging(0.689) TCGA-D3-A8GO-06 21 35821378 35821378 G A KCNE1 3'UTR 0.60 TCGA-D3-A8GO-06 21 39426982 39426982 C T DSCR4 Silent p.R108R 0.24 TCGA-D3-A8GO-06 21 44589231 44589231 C T CRYAA Missense_Mutation p.P8S 0.22 tolerated(0.13) probably_damaging(1) TCGA-D3-A8GO-06 22 17288936 17288936 C T XKR3 Missense_Mutation p.E10K 0.32 deleterious(0.04) possibly_damaging(0.636) TCGA-D3-A8GO-06 22 31521988 31521988 C T INPP5J Intron 0.43 TCGA-D3-A8GO-06 22 32808142 32808142 A G RTCB Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-D3-A8GO-06 22 43976348 43976348 G A EFCAB6 Missense_Mutation p.S1075F 0.38 tolerated(0.7) benign(0.039) TCGA-D3-A8GO-06 22 50903093 50903093 G A SBF1 Silent p.P502P 0.31 TCGA-D3-A8GO-06 2 102992462 102992462 C T IL18R1 Silent p.F188F 0.30 TCGA-D3-A8GO-06 2 103141486 103141486 C T SLC9A4 Silent p.L608L 0.09 TCGA-D3-A8GO-06 2 103148791 103148791 G A SLC9A4 Missense_Mutation p.D681N 0.19 tolerated(0.21) benign(0.002) TCGA-D3-A8GO-06 2 10350635 10350635 C T C2orf48 Missense_Mutation p.S131F 0.18 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-D3-A8GO-06 2 107042531 107042531 G A RGPD3 Silent p.G873G 0.08 TCGA-D3-A8GO-06 2 109383769 109383769 C T RANBP2 Silent p.F2258F 0.14 TCGA-D3-A8GO-06 2 128186201 128186201 C T PROC Silent p.N355N 0.28 TCGA-D3-A8GO-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.13 deleterious(0.02) unknown(0) TCGA-D3-A8GO-06 2 141116429 141116429 C T LRP1B Missense_Mutation p.D3740N 0.24 possibly_damaging(0.539) TCGA-D3-A8GO-06 2 152266989 152266989 G A RIF1 Missense_Mutation p.D18N 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 2 152490267 152490267 G A NEB Silent p.V3105V 0.15 TCGA-D3-A8GO-06 2 160086915 160086915 C T TANC1 Missense_Mutation p.L1660F 0.16 tolerated_low_confidence(0.24) benign(0.24) TCGA-D3-A8GO-06 2 160885360 160885360 C T PLA2R1 Splice_Site p.X319_splice 0.52 TCGA-D3-A8GO-06 2 160885361 160885361 C T PLA2R1 Missense_Mutation p.E319K 0.50 deleterious(0.05) benign(0.41) TCGA-D3-A8GO-06 2 164467600 164467600 G A FIGN Missense_Mutation p.P248S 0.33 tolerated(0.28) benign(0) TCGA-D3-A8GO-06 2 166165718 166165718 C T SCN2A Nonsense_Mutation p.R217* 0.24 TCGA-D3-A8GO-06 2 166246353 166246353 C T SCN2A 3'UTR 0.29 TCGA-D3-A8GO-06 2 169995171 169995171 G A LRP2 Silent p.T4478T 0.22 TCGA-D3-A8GO-06 2 170163854 170163854 G A LRP2 Missense_Mutation p.P122S 0.12 probably_damaging(0.987) TCGA-D3-A8GO-06 2 179255850 179255850 T A OSBPL6 Missense_Mutation p.D809E 0.15 deleterious(0.01) possibly_damaging(0.528) TCGA-D3-A8GO-06 2 179437482 179437482 C T TTN Silent p.E24459E 0.33 TCGA-D3-A8GO-06 2 179484608 179484608 G A TTN Missense_Mutation p.P15479L 0.13 TCGA-D3-A8GO-06 2 179584010 179584010 G A TTN Missense_Mutation p.S8036L 0.06 TCGA-D3-A8GO-06 2 179587821 179587821 C T TTN Missense_Mutation p.E7305K 0.13 TCGA-D3-A8GO-06 2 179614661 179614661 C T TTN Intron 0.28 TCGA-D3-A8GO-06 2 179634572 179634572 G A TTN Silent p.S2912S 0.18 TCGA-D3-A8GO-06 2 179666924 179666924 G A TTN Missense_Mutation p.S79F 0.21 TCGA-D3-A8GO-06 2 182374507 182374507 G A ITGA4 Silent p.K606K 0.33 TCGA-D3-A8GO-06 2 184024250 184024250 C T NUP35 Missense_Mutation p.S258L 0.33 tolerated(0.11) benign(0.002) TCGA-D3-A8GO-06 2 186696596 186696596 G A FSIP2 Silent p.K6947K 0.27 TCGA-D3-A8GO-06 2 191795164 191795164 T C GLS Missense_Mutation p.V476A 0.11 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GO-06 2 192012816 192012816 A C STAT4 Missense_Mutation p.I38M 0.11 deleterious(0.02) probably_damaging(0.963) TCGA-D3-A8GO-06 2 207823033 207823033 A G CPO Silent p.Q92Q 0.33 TCGA-D3-A8GO-06 2 209308188 209308188 G A PTH2R Missense_Mutation p.E209K 0.15 tolerated(0.09) possibly_damaging(0.744) TCGA-D3-A8GO-06 2 212566827 212566827 C T ERBB4 Missense_Mutation p.E452K 0.30 deleterious(0) benign(0.206) TCGA-D3-A8GO-06 2 219130661 219130661 C T AAMP Missense_Mutation p.G258S 0.10 tolerated(0.17) benign(0.315) TCGA-D3-A8GO-06 2 220098574 220098574 C T ANKZF1 Silent p.P319P 0.32 TCGA-D3-A8GO-06 2 220098575 220098575 C T ANKZF1 Nonsense_Mutation p.R320* 0.32 TCGA-D3-A8GO-06 2 228890134 228890134 G A SPHKAP Silent p.L139L 0.19 TCGA-D3-A8GO-06 2 233704639 233704639 C T GIGYF2 Silent p.I970I 0.23 TCGA-D3-A8GO-06 2 234628242 234628242 G A UGT1A4 Missense_Mutation p.G259E 0.14 tolerated(0.18) benign(0.012) TCGA-D3-A8GO-06 2 237489152 237489152 C T ACKR3 Missense_Mutation p.S15L 0.26 deleterious(0.01) benign(0.124) TCGA-D3-A8GO-06 2 241528882 241528882 C T CAPN10 Silent p.L88L 0.15 TCGA-D3-A8GO-06 2 241831049 241831049 C T C2orf54 Missense_Mutation p.G216R 0.12 tolerated(0.3) benign(0.046) TCGA-D3-A8GO-06 2 242741242 242741242 T C GAL3ST2 Missense_Mutation p.F56L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 2 24930128 24930128 C T NCOA1 Nonsense_Mutation p.Q597* 0.07 TCGA-D3-A8GO-06 2 26652500 26652500 T A DRC1 Nonsense_Mutation p.L182* 0.08 TCGA-D3-A8GO-06 2 27461946 27461946 C T CAD Missense_Mutation p.P1700L 0.18 tolerated(0.06) benign(0.13) TCGA-D3-A8GO-06 2 27801164 27801164 G A C2orf16 Silent p.Q575Q 0.24 TCGA-D3-A8GO-06 2 29498004 29498004 C T ALK Missense_Mutation p.E668K 0.20 tolerated(0.37) benign(0.002) TCGA-D3-A8GO-06 2 30976064 30976064 C T CAPN13 Nonsense_Mutation p.W314* 0.23 TCGA-D3-A8GO-06 2 39971551 39971551 C A THUMPD2 Missense_Mutation p.K382N 0.14 tolerated(0.1) probably_damaging(0.997) TCGA-D3-A8GO-06 2 48573433 48573433 T C FOXN2 Missense_Mutation p.I27T 0.10 tolerated(0.31) benign(0.002) TCGA-D3-A8GO-06 2 50149307 50149307 C T NRXN1 Missense_Mutation p.M1473I 0.10 deleterious(0.01) benign(0.406) TCGA-D3-A8GO-06 2 62067618 62067618 G A FAM161A Missense_Mutation p.S174F 0.31 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GO-06 2 70931469 70931469 G A ADD2 Silent p.F102F 0.11 TCGA-D3-A8GO-06 2 86075133 86075133 G A ST3GAL5 Silent p.V171V 0.15 TCGA-D3-A8GO-06 2 95483020 95483020 C T ANKRD20A8P RNA 0.27 TCGA-D3-A8GO-06 2 95497788 95497788 C T ANKRD20A8P RNA 0.25 TCGA-D3-A8GO-06 2 95945623 95945623 G T PROM2 Silent p.V435V 0.30 TCGA-D3-A8GO-06 2 96920577 96920577 G T TMEM127 Missense_Mutation p.L135I 0.15 tolerated(0.12) possibly_damaging(0.627) TCGA-D3-A8GO-06 2 97039104 97039104 A G NCAPH 3'UTR 0.14 TCGA-D3-A8GO-06 3 109047786 109047786 G A DPPA4 Missense_Mutation p.P277S 0.14 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 3 111312491 111312491 C T ZBED2 Silent p.R186R 0.11 TCGA-D3-A8GO-06 3 111312992 111312992 G A ZBED2 Silent p.D19D 0.13 TCGA-D3-A8GO-06 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.23 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 3 122667504 122667504 C T SEMA5B Missense_Mutation p.M113I 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-D3-A8GO-06 3 124351470 124351470 C T KALRN Missense_Mutation p.R97C 0.18 tolerated(0.05) benign(0.009) TCGA-D3-A8GO-06 3 126915870 126915870 C T C3orf56 Silent p.L114L 0.14 TCGA-D3-A8GO-06 3 12859348 12859348 C T CAND2 Missense_Mutation p.P973S 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-D3-A8GO-06 3 131268814 131268814 C T CPNE4 Missense_Mutation p.E427K 0.12 tolerated(0.37) probably_damaging(0.995) TCGA-D3-A8GO-06 3 131418780 131418780 C T CPNE4 Silent p.G135G 0.14 TCGA-D3-A8GO-06 3 14526396 14526396 C T SLC6A6 Missense_Mutation p.P582S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GO-06 3 14547216 14547216 G A GRIP2 RNA 0.40 TCGA-D3-A8GO-06 3 151165861 151165861 G A IGSF10 Silent p.T636T 0.34 TCGA-D3-A8GO-06 3 151545948 151545948 G A AADAC Silent p.K396K 0.15 TCGA-D3-A8GO-06 3 154007527 154007527 G A DHX36 Missense_Mutation p.P635S 0.12 tolerated(0.18) benign(0.186) TCGA-D3-A8GO-06 3 164712169 164712169 C T SI Missense_Mutation p.E1573K 0.26 tolerated(0.4) benign(0.05) TCGA-D3-A8GO-06 3 169540519 169540519 G A LRRIQ4 Silent p.E270E 0.17 TCGA-D3-A8GO-06 3 192053205 192053205 C T FGF12 Missense_Mutation p.G120E 0.12 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GO-06 3 193080175 193080175 C T ATP13A5 Silent p.E177E 0.22 TCGA-D3-A8GO-06 3 196096311 196096311 G A UBXN7 Silent p.S229S 0.13 TCGA-D3-A8GO-06 3 196792198 196792198 G A DLG1 Silent p.N807N 0.13 TCGA-D3-A8GO-06 3 24231643 24231643 G A THRB Missense_Mutation p.H69Y 0.34 deleterious_low_confidence(0.01) benign(0.004) TCGA-D3-A8GO-06 3 38163995 38163995 T A DLEC1 3'UTR 0.12 TCGA-D3-A8GO-06 3 38597163 38597163 G A SCN5A Missense_Mutation p.P1509L 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 3 38627476 38627476 G A SCN5A Silent p.I831I 0.33 TCGA-D3-A8GO-06 3 38781037 38781037 C T SCN10A Missense_Mutation p.G750E 0.16 tolerated(1) possibly_damaging(0.904) TCGA-D3-A8GO-06 3 38968362 38968362 G A SCN11A Silent p.F183F 0.21 TCGA-D3-A8GO-06 3 46307639 46307639 C T CCR3 Silent p.F351F 0.25 TCGA-D3-A8GO-06 3 46874466 46874466 C T PRSS42 Nonsense_Mutation p.W201* 0.29 TCGA-D3-A8GO-06 3 48309425 48309425 C T ZNF589 Missense_Mutation p.H82Y 0.33 tolerated(0.77) benign(0.094) TCGA-D3-A8GO-06 3 52326820 52326820 C T GLYCTK Missense_Mutation p.S417L 0.16 tolerated(0.12) benign(0.043) TCGA-D3-A8GO-06 3 52668684 52668684 G A PBRM1 Missense_Mutation p.P412L 0.15 deleterious(0) possibly_damaging(0.786) TCGA-D3-A8GO-06 3 52724784 52724784 A G GNL3 Intron 0.35 TCGA-D3-A8GO-06 3 57489925 57489925 C T DNAH12 Missense_Mutation p.D302N 0.11 tolerated(0.09) benign(0.037) TCGA-D3-A8GO-06 3 77542460 77542460 C T ROBO2 Missense_Mutation p.R261C 0.33 tolerated(0.06) possibly_damaging(0.898) TCGA-D3-A8GO-06 3 88189987 88189987 T A ZNF654 Silent p.L509L 0.21 TCGA-D3-A8GO-06 3 89259218 89259218 A G EPHA3 Missense_Mutation p.N121S 0.31 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GO-06 3 9781061 9781061 T C BRPF1 Silent p.R326R 0.16 TCGA-D3-A8GO-06 3 99897254 99897254 C T CMSS1 3'UTR 0.19 TCGA-D3-A8GO-06 3 9990419 9990419 C T PRRT3 Intron 0.10 TCGA-D3-A8GO-06 4 115856422 115856422 G A NDST4 Silent p.P492P 0.27 TCGA-D3-A8GO-06 4 120427019 120427019 T G PDE5A Missense_Mutation p.E753A 0.31 tolerated(0.17) possibly_damaging(0.646) TCGA-D3-A8GO-06 4 123236688 123236688 C T KIAA1109 Missense_Mutation p.P3462S 0.26 probably_damaging(0.998) TCGA-D3-A8GO-06 4 126372102 126372102 G A FAT4 Missense_Mutation p.A3311T 0.17 probably_damaging(1) TCGA-D3-A8GO-06 4 138442637 138442637 G A PCDH18 Missense_Mutation p.T985I 0.39 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GO-06 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.30 deleterious(0.02) possibly_damaging(0.861) TCGA-D3-A8GO-06 4 141334124 141334124 C T CLGN Missense_Mutation p.E37K 0.37 tolerated(0.07) benign(0.011) TCGA-D3-A8GO-06 4 155161835 155161835 C T DCHS2 Missense_Mutation p.V1950M 0.31 deleterious(0.04) benign(0.444) TCGA-D3-A8GO-06 4 155236945 155236945 G A DCHS2 Missense_Mutation p.P1284S 0.41 deleterious(0.02) possibly_damaging(0.822) TCGA-D3-A8GO-06 4 159790398 159790398 C T FNIP2 Silent p.I870I 0.19 TCGA-D3-A8GO-06 4 166414333 166414333 G A CPE Missense_Mutation p.G375E 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 4 169342938 169342938 C G DDX60L Silent p.G789G 0.16 TCGA-D3-A8GO-06 4 169342939 169342939 C T DDX60L Missense_Mutation p.G789E 0.16 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GO-06 4 169342940 169342940 C A DDX60L Missense_Mutation p.G789W 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 4 1739011 1739011 G A TACC3 Missense_Mutation p.A598T 0.18 tolerated(0.06) possibly_damaging(0.467) TCGA-D3-A8GO-06 4 189068002 189068002 G A TRIML1 Missense_Mutation p.A295T 0.26 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GO-06 4 190947596 190947596 G A FRG2 Missense_Mutation p.R92W 0.30 deleterious(0.03) possibly_damaging(0.806) TCGA-D3-A8GO-06 4 47628451 47628451 C T CORIN Silent p.G762G 0.23 TCGA-D3-A8GO-06 4 49063837 49063837 C T CWH43 Missense_Mutation p.S677F 0.42 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GO-06 4 55980401 55980401 C T KDR Silent p.P230P 0.23 TCGA-D3-A8GO-06 4 57777453 57777453 C T REST Missense_Mutation p.R217C 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GO-06 4 675859 675859 G A MFSD7 Missense_Mutation p.A523V 0.20 tolerated_low_confidence(0.12) benign(0.07) TCGA-D3-A8GO-06 4 68424473 68424473 G A STAP1 5'UTR 0.29 TCGA-D3-A8GO-06 4 76924841 76924841 C T CXCL9 Silent p.K96K 0.27 TCGA-D3-A8GO-06 4 79512753 79512753 G A ANXA3 Silent p.R153R 0.22 TCGA-D3-A8GO-06 4 81967281 81967281 C T BMP3 Missense_Mutation p.P236S 0.26 tolerated(0.45) benign(0.042) TCGA-D3-A8GO-06 4 8288453 8288453 C T HTRA3 Silent p.A217A 0.40 TCGA-D3-A8GO-06 5 106763008 106763008 C T EFNA5 Missense_Mutation p.G110R 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 5 110411728 110411728 G A TSLP Missense_Mutation p.G146R 0.22 tolerated(0.42) benign(0.037) TCGA-D3-A8GO-06 5 112769665 112769665 G A TSSK1B Missense_Mutation p.S291F 0.33 deleterious(0) possibly_damaging(0.563) TCGA-D3-A8GO-06 5 118969682 118969682 C T FAM170A Missense_Mutation p.P80L 0.09 tolerated(0.11) benign(0.234) TCGA-D3-A8GO-06 5 121188018 121188018 G A FTMT Silent p.R120R 0.25 TCGA-D3-A8GO-06 5 121799317 121799317 G A SNCAIP 3'UTR 0.23 TCGA-D3-A8GO-06 5 134044500 134044500 A G SEC24A Silent p.L883L 0.17 TCGA-D3-A8GO-06 5 137295859 137295859 A C FAM13B Missense_Mutation p.I430S 0.21 tolerated(0.54) benign(0.017) TCGA-D3-A8GO-06 5 137427176 137427176 C T WNT8A 3'UTR 0.24 TCGA-D3-A8GO-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.19 benign(0) TCGA-D3-A8GO-06 5 13859648 13859648 G A DNAH5 Silent p.I1621I 0.22 TCGA-D3-A8GO-06 5 13876793 13876807 CTTTTTGGTGGAGTT - DNAH5 In_Frame_Del p.N1128_K1132del 0.20 TCGA-D3-A8GO-06 5 139267000 139267000 G A NRG2 Missense_Mutation p.P266L 0.24 tolerated(0.18) possibly_damaging(0.842) TCGA-D3-A8GO-06 5 139267001 139267001 G A NRG2 Missense_Mutation p.P266S 0.24 deleterious(0.01) probably_damaging(0.949) TCGA-D3-A8GO-06 5 140308680 140308680 C T PCDHAC1 Missense_Mutation p.P735S 0.32 tolerated(0.46) benign(0.003) TCGA-D3-A8GO-06 5 140581660 140581660 C T PCDHB11 Silent p.I771I 0.27 TCGA-D3-A8GO-06 5 140590656 140590656 C T PCDHB12 Missense_Mutation p.S726L 0.28 tolerated_low_confidence(0.1) benign(0.028) TCGA-D3-A8GO-06 5 140596009 140596009 C T PCDHB13 Missense_Mutation p.P772S 0.22 tolerated_low_confidence(0.09) benign(0.061) TCGA-D3-A8GO-06 5 140604658 140604658 C T PCDHB14 Silent p.F527F 0.22 TCGA-D3-A8GO-06 5 140627489 140627489 G A PCDHB15 Silent p.R781R 0.29 TCGA-D3-A8GO-06 5 140725832 140725832 C G PCDHGA3 Missense_Mutation p.D744E 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.765) TCGA-D3-A8GO-06 5 140754501 140754501 T G PCDHGA6 Missense_Mutation p.I284S 0.23 tolerated_low_confidence(0.08) benign(0.057) TCGA-D3-A8GO-06 5 140754502 140754502 T A PCDHGA6 Silent p.I284I 0.21 TCGA-D3-A8GO-06 5 140787929 140787929 C T PCDHGB6 Silent p.L54L 0.22 TCGA-D3-A8GO-06 5 14489091 14489091 C T TRIO Intron 0.23 TCGA-D3-A8GO-06 5 145465117 145465117 G A PLAC8L1 Silent p.I100I 0.26 TCGA-D3-A8GO-06 5 149515295 149515295 C T PDGFRB Missense_Mutation p.E63K 0.19 tolerated(0.19) benign(0.003) TCGA-D3-A8GO-06 5 151771675 151771675 C T NMUR2 3'UTR 0.23 TCGA-D3-A8GO-06 5 151784333 151784333 G A NMUR2 Silent p.F114F 0.24 TCGA-D3-A8GO-06 5 151784639 151784639 C T NMUR2 Nonsense_Mutation p.W12* 0.23 TCGA-D3-A8GO-06 5 154396849 154396849 C T KIF4B Silent p.L1144L 0.22 TCGA-D3-A8GO-06 5 156671315 156671315 C T ITK Silent p.L426L 0.25 TCGA-D3-A8GO-06 5 160886815 160886815 C T GABRB2 Nonsense_Mutation p.W91* 0.27 TCGA-D3-A8GO-06 5 168216613 168216613 G A SLIT3 Missense_Mutation p.S344L 0.31 deleterious(0) benign(0.361) TCGA-D3-A8GO-06 5 170162870 170162870 C T KCNIP1 3'Flank 0.15 TCGA-D3-A8GO-06 5 172590886 172590886 C T BNIP1 Missense_Mutation p.L260F 0.25 tolerated(0.16) possibly_damaging(0.523) TCGA-D3-A8GO-06 5 176314216 176314216 C T HK3 Missense_Mutation p.G575S 0.25 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GO-06 5 176314515 176314515 G A HK3 Nonsense_Mutation p.R513* 0.18 TCGA-D3-A8GO-06 5 180058749 180058749 G A FLT4 Missense_Mutation p.P30S 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 5 1801587 1801587 G A NDUFS6 Missense_Mutation p.R19Q 0.57 tolerated(0.31) benign(0.001) TCGA-D3-A8GO-06 5 26881320 26881320 A T CDH9 Missense_Mutation p.D765E 0.22 tolerated(0.09) benign(0.011) TCGA-D3-A8GO-06 5 32074213 32074213 C T PDZD2 Missense_Mutation p.P1001S 0.22 tolerated(1) benign(0) TCGA-D3-A8GO-06 5 33467711 33467712 - AG TARS Frame_Shift_Ins p.D725Efs*58 0.21 TCGA-D3-A8GO-06 5 38427179 38427179 G A EGFLAM Missense_Mutation p.E627K 0.30 tolerated(0.69) benign(0.15) TCGA-D3-A8GO-06 5 38464020 38464020 G A EGFLAM Missense_Mutation p.D996N 0.09 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GO-06 5 55212752 55212752 C T IL31RA Missense_Mutation p.S700F 0.34 tolerated(0.49) possibly_damaging(0.751) TCGA-D3-A8GO-06 5 64867905 64867905 C T PPWD1 Missense_Mutation p.P254L 0.22 tolerated(0.26) benign(0.108) TCGA-D3-A8GO-06 5 72151724 72151724 C T TNPO1 Missense_Mutation p.S110F 0.19 deleterious(0) possibly_damaging(0.547) TCGA-D3-A8GO-06 5 76171159 76171159 C T S100Z 5'UTR 0.15 TCGA-D3-A8GO-06 5 78379025 78379025 C T BHMT2 Silent p.I203I 0.15 TCGA-D3-A8GO-06 5 83549908 83549908 C T EDIL3 Missense_Mutation p.E64K 0.36 tolerated_low_confidence(0.35) benign(0.054) TCGA-D3-A8GO-06 5 90072290 90072290 C T GPR98 Missense_Mutation p.R4142W 0.24 possibly_damaging(0.876) TCGA-D3-A8GO-06 5 94288955 94288955 C T MCTP1 Missense_Mutation p.V317I 0.24 tolerated(0.9) benign(0.074) TCGA-D3-A8GO-06 6 123384982 123384982 G A CLVS2 3'UTR 0.11 TCGA-D3-A8GO-06 6 128134273 128134273 G A THEMIS Missense_Mutation p.P505S 0.31 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GO-06 6 137245648 137245648 C T SLC35D3 Silent p.P355P 0.42 TCGA-D3-A8GO-06 6 138611084 138611084 A C KIAA1244 Missense_Mutation p.D1009A 0.06 tolerated(0.11) possibly_damaging(0.844) TCGA-D3-A8GO-06 6 152809557 152809557 C T SYNE1 Missense_Mutation p.E341K 0.19 benign(0.011) TCGA-D3-A8GO-06 6 159181735 159181735 G A SYTL3 Missense_Mutation p.V458I 0.15 tolerated(0.44) benign(0.047) TCGA-D3-A8GO-06 6 160828186 160828186 G A SLC22A3 Missense_Mutation p.G216D 0.11 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GO-06 6 24205430 24205430 G A DCDC2 Intron 0.14 TCGA-D3-A8GO-06 6 27835115 27835115 G A HIST1H1B Missense_Mutation p.L65F 0.17 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GO-06 6 28358499 28358499 C T ZSCAN12 Missense_Mutation p.R523K 0.30 tolerated(1) benign(0.137) TCGA-D3-A8GO-06 6 29691220 29691220 C T HLA-F 5'UTR 0.16 TCGA-D3-A8GO-06 6 31912780 31912780 C T C2 Missense_Mutation p.L685F 0.27 tolerated(0.1) benign(0.138) TCGA-D3-A8GO-06 6 32629766 32629766 C T HLA-DQB1 Silent p.Q213Q 0.33 TCGA-D3-A8GO-06 6 32629921 32629921 G A HLA-DQB1 Missense_Mutation p.R162W 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GO-06 6 35705044 35705044 C T ARMC12 Silent p.I53I 0.32 TCGA-D3-A8GO-06 6 35716469 35716469 C T ARMC12 Missense_Mutation p.S309F 0.09 deleterious(0.01) benign(0.183) TCGA-D3-A8GO-06 6 36178194 36178194 C T BRPF3 Silent p.L690L 0.31 TCGA-D3-A8GO-06 6 38976744 38976744 G A DNAH8 Missense_Mutation p.E4240K 0.25 probably_damaging(0.985) TCGA-D3-A8GO-06 6 39272299 39272299 C T KCNK17 Nonsense_Mutation p.W162* 0.33 TCGA-D3-A8GO-06 6 39285646 39285646 C T KCNK16 Silent p.V137V 0.35 TCGA-D3-A8GO-06 6 41029358 41029358 G A APOBEC2 Silent p.K141K 0.14 TCGA-D3-A8GO-06 6 43141807 43141807 C T SRF Missense_Mutation p.L246F 0.18 deleterious(0) possibly_damaging(0.587) TCGA-D3-A8GO-06 6 43163847 43163847 C T CUL9 Missense_Mutation p.P810L 0.28 tolerated(0.11) benign(0.004) TCGA-D3-A8GO-06 6 43496571 43496571 G A XPO5 Missense_Mutation p.H924Y 0.19 tolerated(0.99) benign(0.001) TCGA-D3-A8GO-06 6 43496572 43496572 G A XPO5 Silent p.L923L 0.18 TCGA-D3-A8GO-06 6 44224579 44224579 G A SLC35B2 Silent p.S16S 0.12 TCGA-D3-A8GO-06 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.17 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-D3-A8GO-06 6 53989431 53989431 C T MLIP Missense_Mutation p.A127V 0.09 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GO-06 6 55216076 55216076 G A GFRAL Silent p.L132L 0.31 TCGA-D3-A8GO-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.49 tolerated(0.45) benign(0.018) TCGA-D3-A8GO-06 6 55739533 55739533 C T BMP5 Missense_Mutation p.R44Q 0.28 tolerated(0.14) possibly_damaging(0.862) TCGA-D3-A8GO-06 6 56492942 56492942 C T DST Missense_Mutation p.G961D 0.05 possibly_damaging(0.783) TCGA-D3-A8GO-06 6 64394609 64394609 C T PHF3 Missense_Mutation p.S329F 0.27 deleterious_low_confidence(0.03) benign(0.157) TCGA-D3-A8GO-06 6 72968699 72968699 G A RIMS1 Missense_Mutation p.E980K 0.15 deleterious(0.04) probably_damaging(0.993) TCGA-D3-A8GO-06 6 74079071 74079071 C T OOEP Silent p.T76T 0.12 TCGA-D3-A8GO-06 6 76728533 76728533 C T IMPG1 Missense_Mutation p.E237K 0.34 deleterious(0.01) possibly_damaging(0.745) TCGA-D3-A8GO-06 6 87725383 87725383 C T HTR1E Missense_Mutation p.L111F 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 6 90405489 90405489 G A MDN1 Silent p.H3202H 0.43 TCGA-D3-A8GO-06 7 107420183 107420183 C T SLC26A3 Missense_Mutation p.G446E 0.32 tolerated(0.08) probably_damaging(0.987) TCGA-D3-A8GO-06 7 108113114 108113114 G A PNPLA8 Missense_Mutation p.H694Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GO-06 7 113518611 113518611 C G PPP1R3A Missense_Mutation p.E846Q 0.08 tolerated(0.16) possibly_damaging(0.641) TCGA-D3-A8GO-06 7 120782053 120782053 G A CPED1 Missense_Mutation p.G638E 0.37 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GO-06 7 122342343 122342343 C T RNF148 Missense_Mutation p.M154I 0.37 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GO-06 7 123517073 123517073 G C HYAL4 Missense_Mutation p.C437S 0.38 deleterious(0) possibly_damaging(0.884) TCGA-D3-A8GO-06 7 130135981 130135981 G A MEST Intron 0.12 TCGA-D3-A8GO-06 7 132193296 132193296 G A PLXNA4 Missense_Mutation p.H53Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 7 135078820 135078820 C T CNOT4 Missense_Mutation p.G493S 0.23 tolerated(0.12) benign(0.028) TCGA-D3-A8GO-06 7 137237241 137237241 G A DGKI Missense_Mutation p.S674F 0.32 deleterious(0) probably_damaging(0.914) TCGA-D3-A8GO-06 7 138394541 138394541 C A ATP6V0A4 Splice_Site p.X753_splice 0.20 TCGA-D3-A8GO-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GO-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.39 deleterious(0) possibly_damaging(0.838) TCGA-D3-A8GO-06 7 141765190 141765190 C T MGAM Missense_Mutation p.P1514S 0.39 deleterious(0.01) possibly_damaging(0.732) TCGA-D3-A8GO-06 7 141796213 141796213 C T MGAM Missense_Mutation p.R1668C 0.10 deleterious(0) benign(0.127) TCGA-D3-A8GO-06 7 143792882 143792882 C T OR2A12 Nonsense_Mutation p.Q228* 0.18 TCGA-D3-A8GO-06 7 14622740 14622740 G A DGKB Missense_Mutation p.P487S 0.36 tolerated(0.06) benign(0.177) TCGA-D3-A8GO-06 7 148463748 148463748 C T CUL1 Silent p.L295L 0.50 TCGA-D3-A8GO-06 7 148769018 148769018 G A ZNF786 Silent p.T282T 0.22 TCGA-D3-A8GO-06 7 149482681 149482681 C T SSPO RNA 0.50 TCGA-D3-A8GO-06 7 150774741 150774741 G A FASTK Missense_Mutation p.P389L 0.11 deleterious(0.05) benign(0.026) TCGA-D3-A8GO-06 7 22857646 22857646 G A TOMM7 Missense_Mutation p.P42L 0.16 deleterious(0) possibly_damaging(0.846) TCGA-D3-A8GO-06 7 27140614 27140614 G A HOXA2 Nonsense_Mutation p.Q288* 0.43 TCGA-D3-A8GO-06 7 28857797 28857797 G A CREB5 Splice_Site p.X455_splice 0.14 TCGA-D3-A8GO-06 7 31829774 31829774 G A PDE1C Intron 0.61 TCGA-D3-A8GO-06 7 31867925 31867925 C T PDE1C Missense_Mutation p.M482I 0.12 deleterious(0.05) benign(0.403) TCGA-D3-A8GO-06 7 33397598 33397598 C T BBS9 Missense_Mutation p.L562F 0.56 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GO-06 7 38389022 38389022 C T TRGV5 Nonsense_Mutation p.W96* 0.47 TCGA-D3-A8GO-06 7 39991365 39991365 C T CDK13 Silent p.S375S 0.17 TCGA-D3-A8GO-06 7 43484954 43484954 C T HECW1 Missense_Mutation p.S728F 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GO-06 7 44119268 44119268 C T POLM Missense_Mutation p.A182T 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 7 45016667 45016667 G A MYO1G Silent p.F33F 0.61 TCGA-D3-A8GO-06 7 47408646 47408646 G A TNS3 Missense_Mutation p.P533S 0.49 tolerated(0.74) benign(0.017) TCGA-D3-A8GO-06 7 48312711 48312711 T G ABCA13 Missense_Mutation p.W1150G 0.20 probably_damaging(0.999) TCGA-D3-A8GO-06 7 50450238 50450238 G A IKZF1 Missense_Mutation p.G141E 0.12 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GO-06 7 5540214 5540214 G A FBXL18 Silent p.S562S 0.46 TCGA-D3-A8GO-06 7 5780785 5780785 G A RNF216 Missense_Mutation p.S288F 0.16 deleterious(0) benign(0.426) TCGA-D3-A8GO-06 7 63538312 63538312 T C ZNF727 Silent p.C295C 0.39 TCGA-D3-A8GO-06 7 63538583 63538583 C T ZNF727 Missense_Mutation p.H386Y 0.09 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GO-06 7 65547911 65547911 C T ASL Silent p.S112S 0.51 TCGA-D3-A8GO-06 7 66420585 66420585 A T TMEM248 3'UTR 0.28 TCGA-D3-A8GO-06 7 76239377 76239377 T C POMZP3 3'UTR 0.34 TCGA-D3-A8GO-06 7 81593608 81593608 G A CACNA2D1 Missense_Mutation p.A881V 0.29 tolerated(0.14) possibly_damaging(0.546) TCGA-D3-A8GO-06 7 81620548 81620548 T C CACNA2D1 Silent p.K583K 0.23 TCGA-D3-A8GO-06 7 82580183 82580183 C T PCLO Missense_Mutation p.E3241K 0.29 unknown(0) TCGA-D3-A8GO-06 7 87179872 87179872 G A ABCB1 Missense_Mutation p.S379L 0.16 deleterious(0) possibly_damaging(0.834) TCGA-D3-A8GO-06 7 91631176 91631176 C T AKAP9 Nonsense_Mutation p.R649* 0.31 TCGA-D3-A8GO-06 7 91694733 91694733 C T AKAP9 Nonsense_Mutation p.Q2056* 0.23 TCGA-D3-A8GO-06 7 92732558 92732558 C T SAMD9 Nonsense_Mutation p.W951* 0.38 TCGA-D3-A8GO-06 7 97822711 97822711 C T LMTK2 Silent p.L978L 0.27 TCGA-D3-A8GO-06 7 97823800 97823800 C T LMTK2 Silent p.A1341A 0.15 TCGA-D3-A8GO-06 8 109797012 109797012 C T TMEM74 Missense_Mutation p.E106K 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 8 11177395 11177396 - G MTMR9 Intron 0.22 TCGA-D3-A8GO-06 8 113697867 113697867 C T CSMD3 Silent p.T750T 0.17 TCGA-D3-A8GO-06 8 118159295 118159295 G A SLC30A8 Silent p.K58K 0.27 TCGA-D3-A8GO-06 8 119209784 119209784 C T SAMD12 3'UTR 0.44 TCGA-D3-A8GO-06 8 120255712 120255712 G A MAL2 Missense_Mutation p.R172Q 0.21 deleterious(0.05) benign(0.014) TCGA-D3-A8GO-06 8 121644812 121644812 A G SNTB1 Missense_Mutation p.F290L 0.17 tolerated(0.11) benign(0.047) TCGA-D3-A8GO-06 8 125551315 125551315 G A TATDN1 5'UTR 0.16 TCGA-D3-A8GO-06 8 131916126 131916126 G A ADCY8 Silent p.I601I 0.23 TCGA-D3-A8GO-06 8 133141755 133141755 G A KCNQ3 Silent p.S791S 0.30 TCGA-D3-A8GO-06 8 139163742 139163742 G A FAM135B Silent p.S992S 0.26 TCGA-D3-A8GO-06 8 139263178 139263178 G A FAM135B Missense_Mutation p.H150Y 0.19 deleterious(0.02) possibly_damaging(0.885) TCGA-D3-A8GO-06 8 143747322 143747322 G A JRK RNA 0.22 TCGA-D3-A8GO-06 8 144239715 144239715 C T LY6H Silent p.G146G 0.16 TCGA-D3-A8GO-06 8 145742816 145742816 G A RECQL4 Silent p.L65L 0.45 TCGA-D3-A8GO-06 8 17409395 17409395 C A SLC7A2 Missense_Mutation p.L359I 0.31 tolerated(0.32) possibly_damaging(0.519) TCGA-D3-A8GO-06 8 17513464 17513464 G A MTUS1 Missense_Mutation p.R1006W 0.26 deleterious(0.01) benign(0.316) TCGA-D3-A8GO-06 8 2017585 2017585 A G MYOM2 Silent p.E254E 0.29 TCGA-D3-A8GO-06 8 22173781 22173781 G A PIWIL2 Missense_Mutation p.M744I 0.31 tolerated(0.62) benign(0.001) TCGA-D3-A8GO-06 8 23709009 23709009 G A STC1 Silent p.I99I 0.22 TCGA-D3-A8GO-06 8 24193169 24193169 C T ADAM28 Intron 0.20 TCGA-D3-A8GO-06 8 24357764 24357764 T C ADAM7 Missense_Mutation p.V666A 0.22 deleterious(0.05) benign(0.009) TCGA-D3-A8GO-06 8 24359083 24359083 C T ADAM7 Silent p.F734F 0.26 TCGA-D3-A8GO-06 8 38704279 38704279 C A TACC1 Missense_Mutation p.A764D 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GO-06 8 39468211 39468211 C T ADAM18 Missense_Mutation p.P170S 0.24 tolerated(0.4) benign(0.014) TCGA-D3-A8GO-06 8 39506004 39506004 G A ADAM18 Silent p.G396G 0.19 TCGA-D3-A8GO-06 8 41552811 41552811 C T ANK1 Missense_Mutation p.G1041D 0.22 tolerated(0.12) probably_damaging(0.994) TCGA-D3-A8GO-06 8 42038122 42038122 C T PLAT Nonsense_Mutation p.W324* 0.15 TCGA-D3-A8GO-06 8 43152554 43152554 G A POTEA RNA 0.22 TCGA-D3-A8GO-06 8 67514742 67514742 C T MYBL1 Missense_Mutation p.D13N 0.21 deleterious(0.03) benign(0.033) TCGA-D3-A8GO-06 8 70585238 70585238 G A SLCO5A1 Missense_Mutation p.H805Y 0.15 tolerated_low_confidence(0.37) benign(0.034) TCGA-D3-A8GO-06 8 73849788 73849788 C T KCNB2 Missense_Mutation p.T733I 0.19 tolerated_low_confidence(0.13) benign(0.271) TCGA-D3-A8GO-06 8 73979645 73979645 T G SBSPON Silent p.G242G 0.33 TCGA-D3-A8GO-06 8 73979646 73979646 C T SBSPON Missense_Mutation p.G242E 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 8 76470753 76470753 G A HNF4G Missense_Mutation p.G235E 0.21 deleterious(0.01) probably_damaging(0.958) TCGA-D3-A8GO-06 8 77766591 77766591 C T ZFHX4 Silent p.S2478S 0.30 TCGA-D3-A8GO-06 9 100367789 100367789 C T TSTD2 Silent p.R363R 0.28 TCGA-D3-A8GO-06 9 111936827 111936827 G A EPB41L4B 3'UTR 0.41 TCGA-D3-A8GO-06 9 117552861 117552861 G A TNFSF15 Silent p.F209F 0.29 TCGA-D3-A8GO-06 9 117568272 117568272 C T TNFSF15 Silent p.L7L 0.37 TCGA-D3-A8GO-06 9 117792670 117792670 G A TNC Missense_Mutation p.P1979S 0.32 tolerated(0.09) benign(0.371) TCGA-D3-A8GO-06 9 125289237 125289237 G A OR1N1 Silent p.F112F 0.44 TCGA-D3-A8GO-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GO-06 9 129158023 129158023 C T MVB12B Intron 0.37 TCGA-D3-A8GO-06 9 129870351 129870351 G A ANGPTL2 Silent p.A220A 0.52 TCGA-D3-A8GO-06 9 130914467 130914467 A G LCN2 Missense_Mutation p.T161A 0.33 tolerated(0.07) benign(0.279) TCGA-D3-A8GO-06 9 137676922 137676922 C T COL5A1 Silent p.L858L 0.29 TCGA-D3-A8GO-06 9 137717648 137717648 G A COL5A1 Nonsense_Mutation p.W1655* 0.33 TCGA-D3-A8GO-06 9 137801524 137801524 G A FCN1 3'UTR 0.27 TCGA-D3-A8GO-06 9 138377223 138377223 C T PPP1R26 Silent p.F289F 0.39 TCGA-D3-A8GO-06 9 138588594 138588594 G A SOHLH1 Silent p.A175A 0.26 TCGA-D3-A8GO-06 9 14770757 14770757 G A FREM1 Silent p.S1635S 0.38 TCGA-D3-A8GO-06 9 27217743 27217743 A G TEK Missense_Mutation p.T1017A 0.26 deleterious(0) possibly_damaging(0.866) TCGA-D3-A8GO-06 9 6534713 6534713 G A GLDC Missense_Mutation p.P972S 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GO-06 9 841899 841899 G A DMRT1 Missense_Mutation p.G21R 0.80 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GO-06 9 84603885 84603885 C T SPATA31D1 Missense_Mutation p.S51L 0.39 tolerated(1) benign(0.001) TCGA-D3-A8GO-06 9 94486723 94486723 C T ROR2 Missense_Mutation p.V685I 0.39 tolerated(1) benign(0.002) TCGA-D3-A8GO-06 9 97329852 97329852 G A FBP2 Intron 0.78 TCGA-D3-A8GO-06 X 10092302 10092302 C T WWC3 Intron 0.36 TCGA-D3-A8GO-06 X 102005098 102005098 C T BHLHB9 Missense_Mutation p.P392L 0.39 tolerated(0.09) benign(0.015) TCGA-D3-A8GO-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.32 TCGA-D3-A8GO-06 X 114141562 114141562 C T HTR2C Silent p.L321L 0.34 TCGA-D3-A8GO-06 X 114541288 114541288 C T LUZP4 Silent p.L287L 0.32 TCGA-D3-A8GO-06 X 117043439 117043439 C T KLHL13 Silent p.Q400Q 0.34 TCGA-D3-A8GO-06 X 12939333 12939333 C T TLR8 Missense_Mutation p.S725F 0.38 tolerated(0.22) benign(0.232) TCGA-D3-A8GO-06 X 134680684 134680684 C T DDX26B Missense_Mutation p.R163C 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GO-06 X 134711228 134711228 C T DDX26B Silent p.S628S 0.33 TCGA-D3-A8GO-06 X 138619183 138619183 G A F9 Missense_Mutation p.E35K 0.34 tolerated(0.38) benign(0.01) TCGA-D3-A8GO-06 X 151817757 151817757 C T GABRQ Missense_Mutation p.P191S 0.41 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GO-06 X 26212145 26212145 C T MAGEB6 Missense_Mutation p.P61L 0.41 tolerated(0.14) benign(0.097) TCGA-D3-A8GO-06 X 3229012 3229012 G A MXRA5 Missense_Mutation p.S2411F 0.44 tolerated(0.14) benign(0.355) TCGA-D3-A8GO-06 X 3235941 3235941 C T MXRA5 Missense_Mutation p.M1927I 0.27 deleterious(0.02) benign(0.017) TCGA-D3-A8GO-06 X 37028330 37028330 C T FAM47C Missense_Mutation p.S616F 0.29 deleterious(0) benign(0.078) TCGA-D3-A8GO-06 X 48822508 48822508 C T KCND1 Missense_Mutation p.E558K 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.573) TCGA-D3-A8GO-06 X 49142385 49142385 G A PPP1R3F Silent p.Q411Q 0.32 TCGA-D3-A8GO-06 X 50119875 50119875 C T DGKK RNA 0.38 TCGA-D3-A8GO-06 X 50136241 50136241 C T DGKK RNA 0.35 TCGA-D3-A8GO-06 X 51075907 51075907 G A NUDT10 Silent p.E30E 0.44 TCGA-D3-A8GO-06 X 54321134 54321134 C T WNK3 Silent p.G515G 0.39 TCGA-D3-A8GO-06 X 69945127 69945127 C T TEX11 Missense_Mutation p.E319K 0.32 deleterious(0.04) possibly_damaging(0.801) TCGA-D3-A8GO-06 X 70148404 70148404 G A SLC7A3 Silent p.F203F 0.25 TCGA-D3-A8GO-06 X 7889867 7889867 G A PNPLA4 Missense_Mutation p.P100S 0.28 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GO-06 X 84519424 84519424 G A ZNF711 Missense_Mutation p.D256N 0.44 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GP-06 10 115534586 115534586 T C PLEKHS1 Missense_Mutation p.F255L 0.31 tolerated(0.51) benign(0.026) TCGA-D3-A8GP-06 10 127495985 127495985 A G UROS Missense_Mutation p.S131P 0.96 deleterious(0.01) possibly_damaging(0.565) TCGA-D3-A8GP-06 10 131676095 131676095 G A EBF3 Silent p.F191F 0.96 TCGA-D3-A8GP-06 10 18439825 18439825 G A CACNB2 Missense_Mutation p.G45E 0.90 tolerated(0.13) probably_damaging(1) TCGA-D3-A8GP-06 10 25887039 25887039 G A GPR158 Silent p.T828T 0.92 TCGA-D3-A8GP-06 10 28233888 28233888 C T ARMC4 Missense_Mutation p.G464R 0.97 deleterious(0.02) possibly_damaging(0.809) TCGA-D3-A8GP-06 10 30658006 30658006 C A AL161651.1 5'Flank 0.97 TCGA-D3-A8GP-06 10 3822423 3822423 T C KLF6 Splice_Site p.X226_splice 0.96 TCGA-D3-A8GP-06 10 52066985 52066985 G A SGMS1 Nonsense_Mutation p.R387* 0.85 TCGA-D3-A8GP-06 10 55568842 55568842 C T PCDH15 Silent p.R590R 1.00 TCGA-D3-A8GP-06 10 63173356 63173356 C T TMEM26 Intron 1.00 TCGA-D3-A8GP-06 10 75855427 75855427 C T VCL Silent p.I519I 0.98 TCGA-D3-A8GP-06 10 75855428 75855428 C T VCL Missense_Mutation p.R520W 0.98 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 10 85904667 85904667 C T GHITM Silent p.S126S 0.93 TCGA-D3-A8GP-06 10 85982390 85982390 G A LRIT2 Silent p.A313A 0.89 TCGA-D3-A8GP-06 10 85992587 85992587 G A LRIT1 Missense_Mutation p.S323F 0.88 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GP-06 10 90497442 90497442 C T LIPK Silent p.F240F 0.93 TCGA-D3-A8GP-06 10 91465187 91465187 C T KIF20B Missense_Mutation p.P46S 0.98 tolerated(1) benign(0.004) TCGA-D3-A8GP-06 10 95429626 95429626 C A FRA10AC1 Splice_Site p.X302_splice 0.91 TCGA-D3-A8GP-06 10 95791387 95791387 G A PLCE1 Missense_Mutation p.R195K 0.89 deleterious_low_confidence(0.02) benign(0.002) TCGA-D3-A8GP-06 10 96117928 96117928 G A NOC3L Missense_Mutation p.P88S 0.93 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-D3-A8GP-06 10 98778859 98778859 G A SLIT1 Missense_Mutation p.P918S 0.86 tolerated(0.08) possibly_damaging(0.776) TCGA-D3-A8GP-06 11 100141898 100141898 C T CNTN5 Nonsense_Mutation p.R747* 0.41 TCGA-D3-A8GP-06 11 102573553 102573553 G A MMP27 Missense_Mutation p.P184S 0.50 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GP-06 11 102595644 102595644 C T MMP8 5'UTR 0.32 TCGA-D3-A8GP-06 11 102595645 102595645 C T MMP8 5'UTR 0.32 TCGA-D3-A8GP-06 11 113857311 113857311 G A HTR3A Missense_Mutation p.M265I 0.40 tolerated(0.07) benign(0.349) TCGA-D3-A8GP-06 11 113860185 113860185 A T HTR3A Splice_Site p.X418_splice 0.30 TCGA-D3-A8GP-06 11 118403846 118403846 C T TMEM25 Silent p.L199L 0.47 TCGA-D3-A8GP-06 11 119243494 119243494 G A USP2 Missense_Mutation p.R233C 0.54 deleterious(0) possibly_damaging(0.77) TCGA-D3-A8GP-06 11 11974412 11974412 A C USP47 Silent p.R1168R 0.52 TCGA-D3-A8GP-06 11 120833389 120833389 C G GRIK4 Silent p.V755V 0.49 TCGA-D3-A8GP-06 11 123624615 123624615 C T OR6X1 Silent p.V204V 0.44 TCGA-D3-A8GP-06 11 123753804 123753804 C T TMEM225 3'UTR 0.78 TCGA-D3-A8GP-06 11 123886461 123886461 C T OR10G4 Silent p.F60F 0.45 TCGA-D3-A8GP-06 11 124179947 124179947 C T OR8D1 Missense_Mutation p.G239E 0.38 deleterious(0) possibly_damaging(0.907) TCGA-D3-A8GP-06 11 124189248 124189248 G A OR8D2 Silent p.I282I 0.45 TCGA-D3-A8GP-06 11 124252469 124252469 G A OR8B2 Silent p.F257F 0.45 TCGA-D3-A8GP-06 11 12539241 12539241 G A PARVA Missense_Mutation p.D358N 0.56 tolerated(0.32) benign(0.018) TCGA-D3-A8GP-06 11 1271603 1271603 C T MUC5B Missense_Mutation p.S4498F 0.14 benign(0.153) TCGA-D3-A8GP-06 11 128805579 128805579 G A TP53AIP1 Silent p.F94F 0.67 TCGA-D3-A8GP-06 11 130005579 130005579 C T APLP2 Silent p.F602F 0.55 TCGA-D3-A8GP-06 11 134188624 134188624 C T GLB1L3 Missense_Mutation p.H627Y 0.69 tolerated(0.09) benign(0.005) TCGA-D3-A8GP-06 11 134257524 134257524 G A B3GAT1 Silent p.I10I 0.50 TCGA-D3-A8GP-06 11 1501620 1501620 C A MOB2 Intron 0.24 TCGA-D3-A8GP-06 11 1619383 1619383 G A KRTAP5-2 Missense_Mutation p.S33F 0.24 unknown(0) TCGA-D3-A8GP-06 11 18743153 18743153 C T IGSF22 Missense_Mutation p.E103K 0.40 tolerated(0.21) possibly_damaging(0.515) TCGA-D3-A8GP-06 11 32635187 32635187 T C CCDC73 Missense_Mutation p.K893E 0.54 deleterious(0.03) benign(0.394) TCGA-D3-A8GP-06 11 36614188 36614188 C T RAG2 Missense_Mutation p.G511R 0.37 tolerated(0.57) probably_damaging(0.997) TCGA-D3-A8GP-06 11 4388870 4388870 G A OR52B4 Missense_Mutation p.S219F 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 11 4510219 4510219 C T OR52K1 Missense_Mutation p.S30F 0.40 deleterious(0.01) probably_damaging(0.933) TCGA-D3-A8GP-06 11 46338920 46338920 C T CREB3L1 Silent p.A380A 0.40 TCGA-D3-A8GP-06 11 4843547 4843547 A G OR51F2 Missense_Mutation p.K311R 0.41 deleterious(0.04) benign(0.292) TCGA-D3-A8GP-06 11 5173547 5173547 C T OR52A1 Missense_Mutation p.G18E 0.52 deleterious(0.01) possibly_damaging(0.621) TCGA-D3-A8GP-06 11 5289807 5289807 C T HBE1 Silent p.V112V 0.43 TCGA-D3-A8GP-06 11 5372809 5372809 G A OR51B6 Nonsense_Mutation p.W24* 0.36 TCGA-D3-A8GP-06 11 5410645 5410645 C T OR51M1 Missense_Mutation p.S6L 0.51 tolerated_low_confidence(0.42) benign(0.001) TCGA-D3-A8GP-06 11 5475346 5475346 G A OR51I2 Missense_Mutation p.D210N 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 11 55541018 55541018 C T OR5D13 Silent p.F35F 0.42 TCGA-D3-A8GP-06 11 55761967 55761967 C T OR5F1 Missense_Mutation p.M45I 0.47 tolerated(0.13) benign(0.437) TCGA-D3-A8GP-06 11 55872796 55872796 C T OR8H2 Missense_Mutation p.S93F 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 11 57261493 57261493 G A SLC43A1 Missense_Mutation p.R282W 0.50 deleterious(0.01) possibly_damaging(0.67) TCGA-D3-A8GP-06 11 57995700 57995700 G A OR10Q1 Silent p.F216F 0.56 TCGA-D3-A8GP-06 11 60161322 60161322 G A MS4A7 Silent p.R237R 0.42 TCGA-D3-A8GP-06 11 62372609 62372609 A T EML3 Missense_Mutation p.V653E 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GP-06 11 62489307 62489308 CA - HNRNPUL2 Frame_Shift_Del p.V489Afs*31 0.34 TCGA-D3-A8GP-06 11 63594615 63594615 C T C11orf84 3'UTR 0.44 TCGA-D3-A8GP-06 11 6415501 6415501 C T SMPD1 Silent p.I520I 0.62 TCGA-D3-A8GP-06 11 6704527 6704527 T A MRPL17 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-D3-A8GP-06 11 6704528 6704528 G A MRPL17 5'UTR 0.39 TCGA-D3-A8GP-06 11 7984936 7984936 G A NLRP10 Missense_Mutation p.T36I 0.50 tolerated(0.05) possibly_damaging(0.816) TCGA-D3-A8GP-06 11 8752560 8752560 G A ST5 Missense_Mutation p.P93S 0.46 tolerated_low_confidence(0.77) benign(0.001) TCGA-D3-A8GP-06 11 89182691 89182691 A G NOX4 Missense_Mutation p.V89A 0.58 deleterious(0.02) probably_damaging(0.91) TCGA-D3-A8GP-06 12 100796483 100796483 C T SLC17A8 Missense_Mutation p.P338L 0.57 tolerated(0.15) probably_damaging(1) TCGA-D3-A8GP-06 12 101413866 101413866 C T ANO4 Silent p.I228I 0.69 TCGA-D3-A8GP-06 12 101720933 101720933 C T UTP20 Missense_Mutation p.A1039V 0.26 deleterious(0.01) possibly_damaging(0.47) TCGA-D3-A8GP-06 12 102542264 102542264 T C PARPBP Intron 0.37 TCGA-D3-A8GP-06 12 10782209 10782209 C T STYK1 Silent p.G172G 0.28 TCGA-D3-A8GP-06 12 109835617 109835617 G A MYO1H Silent p.Q174Q 0.71 TCGA-D3-A8GP-06 12 111785559 111785559 G A CUX2 Silent p.R1297R 0.58 TCGA-D3-A8GP-06 12 112174669 112174669 C T ACAD10 Silent p.I556I 0.28 TCGA-D3-A8GP-06 12 112174670 112174670 C T ACAD10 Missense_Mutation p.P557S 0.31 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GP-06 12 112187059 112187059 C A ACAD10 Silent p.I940I 0.37 TCGA-D3-A8GP-06 12 112237766 112237766 G A ALDH2 Silent p.G435G 0.54 TCGA-D3-A8GP-06 12 120622685 120622685 G A GCN1L1 Missense_Mutation p.P43S 0.61 probably_damaging(0.996) TCGA-D3-A8GP-06 12 123187014 123187014 C T HCAR2 Missense_Mutation p.D273N 0.29 tolerated(0.68) benign(0.115) TCGA-D3-A8GP-06 12 1940622 1940622 G A LRTM2 Missense_Mutation p.D197N 0.35 tolerated(0.24) possibly_damaging(0.665) TCGA-D3-A8GP-06 12 1963155 1963155 C T CACNA2D4 Missense_Mutation p.M736I 0.33 tolerated(0.23) benign(0.015) TCGA-D3-A8GP-06 12 20792840 20792840 G A PDE3A Missense_Mutation p.E734K 0.60 deleterious(0.01) benign(0.082) TCGA-D3-A8GP-06 12 20801716 20801716 T G PDE3A Missense_Mutation p.I887S 0.45 tolerated(0.45) benign(0.002) TCGA-D3-A8GP-06 12 21487741 21487741 C T SLCO1A2 Intron 0.36 TCGA-D3-A8GP-06 12 24970929 24970929 C T BCAT1 3'UTR 0.63 TCGA-D3-A8GP-06 12 39973341 39973341 G A ABCD2 Missense_Mutation p.H625Y 0.29 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GP-06 12 42853768 42853768 C T PRICKLE1 Missense_Mutation p.G780E 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 12 47472332 47472332 G C AMIGO2 Missense_Mutation p.H152D 0.35 deleterious(0.01) benign(0.077) TCGA-D3-A8GP-06 12 48131830 48131830 G A RAPGEF3 Silent p.D876D 0.60 TCGA-D3-A8GP-06 12 48391452 48391452 C T COL2A1 Silent p.G156G 0.64 TCGA-D3-A8GP-06 12 54963006 54963006 G C PDE1B Missense_Mutation p.R89P 0.57 deleterious(0.04) benign(0.128) TCGA-D3-A8GP-06 12 55367326 55367326 C T TESPA1 Intron 0.32 TCGA-D3-A8GP-06 12 57573674 57573674 C T LRP1 Silent p.S1692S 0.62 TCGA-D3-A8GP-06 12 58001094 58001094 C T DTX3 Missense_Mutation p.P150S 0.60 tolerated(0.82) benign(0) TCGA-D3-A8GP-06 12 6464494 6464494 C T SCNN1A Missense_Mutation p.D422N 0.50 deleterious(0.03) possibly_damaging(0.828) TCGA-D3-A8GP-06 12 66859089 66859089 T A GRIP1 Missense_Mutation p.I280L 0.18 deleterious(0.02) probably_damaging(0.961) TCGA-D3-A8GP-06 12 68724933 68724933 G A MDM1 Silent p.S29S 0.40 TCGA-D3-A8GP-06 12 6982067 6982067 G A SPSB2 5'UTR 0.64 TCGA-D3-A8GP-06 12 72233587 72233587 G A TBC1D15 Missense_Mutation p.G9E 0.22 tolerated(0.17) benign(0.247) TCGA-D3-A8GP-06 12 7301610 7301610 G A CLSTN3 Silent p.E630E 0.14 TCGA-D3-A8GP-06 12 7559377 7559377 G A CD163L1 Nonsense_Mutation p.Q280* 0.38 TCGA-D3-A8GP-06 12 7640458 7640458 C T CD163 Missense_Mutation p.G549E 0.70 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GP-06 12 88522735 88522735 T A CEP290 Silent p.V310V 0.63 TCGA-D3-A8GP-06 12 96379891 96379891 G A HAL Missense_Mutation p.R367W 0.53 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GP-06 12 97137287 97137287 C T C12orf55 Missense_Mutation p.L2443F 0.76 tolerated(0.1) benign(0.184) TCGA-D3-A8GP-06 12 97313824 97313824 G T NEDD1 Missense_Mutation p.G144V 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 12 990038 990038 T G WNK1 Missense_Mutation p.V995G 0.32 deleterious(0.03) benign(0.034) TCGA-D3-A8GP-06 13 100523287 100523295 GCCTTTAAA - CLYBL In_Frame_Del p.A300_K302del 0.44 TCGA-D3-A8GP-06 13 109699307 109699307 C T MYO16 Missense_Mutation p.S925F 0.55 tolerated(0.11) benign(0.151) TCGA-D3-A8GP-06 13 113803362 113803362 C T F10 Missense_Mutation p.T333I 0.56 tolerated(0.19) benign(0.075) TCGA-D3-A8GP-06 13 32735289 32735289 G A FRY Missense_Mutation p.R598K 0.49 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A8GP-06 13 32776606 32776606 C T FRY Silent p.A1320A 0.29 TCGA-D3-A8GP-06 13 36006415 36006415 T A NBEA Missense_Mutation p.H2063Q 0.54 tolerated(0.23) benign(0.01) TCGA-D3-A8GP-06 13 40273717 40273717 A G COG6 Missense_Mutation p.N416D 0.67 deleterious(0.05) possibly_damaging(0.635) TCGA-D3-A8GP-06 13 49830000 49830000 C T CDADC1 Missense_Mutation p.P68L 0.26 tolerated_low_confidence(0.82) benign(0.008) TCGA-D3-A8GP-06 13 77852921 77852921 G A MYCBP2 Silent p.G202G 0.26 TCGA-D3-A8GP-06 13 86368261 86368261 C T SLITRK6 Missense_Mutation p.E795K 0.35 tolerated(0.1) benign(0.08) TCGA-D3-A8GP-06 14 100995420 100995420 C T WDR25 Missense_Mutation p.P430S 0.23 deleterious(0.01) possibly_damaging(0.886) TCGA-D3-A8GP-06 14 101347426 101347426 C T RTL1 Missense_Mutation p.E1234K 0.19 deleterious_low_confidence(0.01) benign(0.417) TCGA-D3-A8GP-06 14 101521091 101521091 A G MIR134 RNA 0.36 TCGA-D3-A8GP-06 14 102028080 102028080 G A DIO3 Missense_Mutation p.E83K 0.64 tolerated_low_confidence(0.09) benign(0.024) TCGA-D3-A8GP-06 14 103372102 103372102 C T TRAF3 Missense_Mutation p.S563L 0.41 deleterious(0) benign(0.166) TCGA-D3-A8GP-06 14 104251186 104251186 C T PPP1R13B Missense_Mutation p.E75K 0.35 deleterious(0) possibly_damaging(0.579) TCGA-D3-A8GP-06 14 104639559 104639559 C G KIF26A Missense_Mutation p.P556A 0.37 deleterious(0.02) benign(0.055) TCGA-D3-A8GP-06 14 106111025 106111025 C T IGHG2 Missense_Mutation p.E35K 0.36 deleterious(0) possibly_damaging(0.482) TCGA-D3-A8GP-06 14 106306962 106306962 G A IGHD Silent p.A289A 0.44 TCGA-D3-A8GP-06 14 107131478 107131478 C T IGHV3-66 Missense_Mutation p.E2K 0.61 tolerated_low_confidence(0.15) benign(0.011) TCGA-D3-A8GP-06 14 20665703 20665703 C T OR11G2 Missense_Mutation p.T70I 0.37 tolerated(0.55) benign(0.004) TCGA-D3-A8GP-06 14 23548067 23548067 C A ACIN1 Missense_Mutation p.A715S 0.22 benign(0.003) TCGA-D3-A8GP-06 14 23829128 23829128 G A EFS Missense_Mutation p.P187S 0.68 tolerated(0.2) benign(0.342) TCGA-D3-A8GP-06 14 24624483 24624483 C T RNF31 Missense_Mutation p.P750S 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 14 30047545 30047545 A G PRKD1 Missense_Mutation p.L819S 0.61 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GP-06 14 35742936 35742936 C T KIAA0391 3'UTR 0.40 TCGA-D3-A8GP-06 14 52194737 52194737 T G FRMD6 Missense_Mutation p.F620C 0.55 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GP-06 14 55903529 55903529 C T TBPL2 Missense_Mutation p.E120K 0.55 tolerated_low_confidence(0.09) benign(0.012) TCGA-D3-A8GP-06 14 60097211 60097211 G C RTN1 Intron 0.63 TCGA-D3-A8GP-06 14 64954213 64954213 G A ZBTB25 Missense_Mutation p.R246C 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-D3-A8GP-06 14 64954214 64954214 T A ZBTB25 Missense_Mutation p.E245D 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GP-06 14 70839574 70839574 C T SYNJ2BP 3'UTR 0.54 TCGA-D3-A8GP-06 14 71493505 71493505 C T PCNX Silent p.F1124F 0.30 TCGA-D3-A8GP-06 14 74824890 74824890 G A VRTN Silent p.G468G 0.31 TCGA-D3-A8GP-06 14 89016643 89016643 G A PTPN21 Missense_Mutation p.S40F 0.22 deleterious(0) possibly_damaging(0.887) TCGA-D3-A8GP-06 14 92915415 92915415 C T SLC24A4 Intron 0.68 TCGA-D3-A8GP-06 14 92959834 92959834 C T SLC24A4 Silent p.H577H 0.51 TCGA-D3-A8GP-06 15 101845512 101845512 C T PCSK6 Missense_Mutation p.R953Q 0.67 tolerated(0.21) possibly_damaging(0.759) TCGA-D3-A8GP-06 15 101853622 101853622 G A PCSK6 Silent p.Y885Y 0.32 TCGA-D3-A8GP-06 15 20489465 20489465 C T CHEK2P2 RNA 0.25 TCGA-D3-A8GP-06 15 20663149 20663149 G A HERC2P3 RNA 0.25 TCGA-D3-A8GP-06 15 23811321 23811321 G A MKRN3 Missense_Mutation p.G131D 0.54 deleterious(0.05) benign(0.001) TCGA-D3-A8GP-06 15 25470215 25470215 C T SNORD115-27 3'Flank 0.32 TCGA-D3-A8GP-06 15 41192217 41192217 A T VPS18 Missense_Mutation p.T401S 0.47 deleterious(0.01) benign(0.348) TCGA-D3-A8GP-06 15 41192218 41192218 C T VPS18 Missense_Mutation p.T401I 0.47 tolerated(0.25) benign(0.007) TCGA-D3-A8GP-06 15 42373207 42373207 G A PLA2G4D Missense_Mutation p.S361F 0.32 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GP-06 15 53908161 53908161 C T WDR72 Missense_Mutation p.E748K 0.39 deleterious(0.03) benign(0.15) TCGA-D3-A8GP-06 15 62538775 62538775 C T AC126323.1 5'Flank 0.45 TCGA-D3-A8GP-06 15 65856658 65856658 C T PTPLAD1 Missense_Mutation p.P213L 0.63 deleterious(0.05) possibly_damaging(0.768) TCGA-D3-A8GP-06 15 66727451 66727451 A C MAP2K1 Missense_Mutation p.Q56P 0.59 deleterious(0.03) possibly_damaging(0.52) TCGA-D3-A8GP-06 15 66729170 66729170 C T MAP2K1 Silent p.I126I 0.41 TCGA-D3-A8GP-06 15 67855651 67855651 T A MAP2K5 Missense_Mutation p.V72E 0.59 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GP-06 15 73616113 73616113 C T HCN4 Nonsense_Mutation p.W774* 0.62 TCGA-D3-A8GP-06 15 74367223 74367223 C T GOLGA6A Missense_Mutation p.E323K 0.35 tolerated(0.25) benign(0.301) TCGA-D3-A8GP-06 15 74483795 74483795 T C STRA6 Missense_Mutation p.N292S 0.25 tolerated(0.86) benign(0.001) TCGA-D3-A8GP-06 15 81651775 81651775 G A TMC3 Silent p.F144F 0.63 TCGA-D3-A8GP-06 15 91449243 91449243 G A MAN2A2 Missense_Mutation p.R235Q 0.59 tolerated(0.11) possibly_damaging(0.717) TCGA-D3-A8GP-06 15 91483624 91483624 T C UNC45A Missense_Mutation p.L203S 0.21 deleterious(0) probably_damaging(0.938) TCGA-D3-A8GP-06 16 10863049 10863049 G A NUBP1 3'UTR 0.23 TCGA-D3-A8GP-06 16 11001575 11001575 G A CIITA Silent p.R742R 0.20 TCGA-D3-A8GP-06 16 14761507 14761507 G T BFAR Missense_Mutation p.R392S 0.71 tolerated(0.34) benign(0.034) TCGA-D3-A8GP-06 16 19474631 19474631 A - TMC5 Frame_Shift_Del p.Q393Rfs*15 0.36 TCGA-D3-A8GP-06 16 2106232 2106232 C T TSC2 Missense_Mutation p.S212F 0.23 tolerated(0.1) benign(0.231) TCGA-D3-A8GP-06 16 2129566 2129566 C T TSC2 Missense_Mutation p.P1098L 0.75 tolerated(0.11) benign(0.003) TCGA-D3-A8GP-06 16 22926268 22926268 C T HS3ST2 Silent p.S163S 0.31 TCGA-D3-A8GP-06 16 22926269 22926269 C T HS3ST2 Silent p.L164L 0.31 TCGA-D3-A8GP-06 16 23208656 23208656 G A SCNN1G Missense_Mutation p.V329M 0.78 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A8GP-06 16 28117468 28117468 T C XPO6 Missense_Mutation p.K894E 0.44 tolerated(0.42) benign(0.032) TCGA-D3-A8GP-06 16 28493984 28493984 G A CLN3 Missense_Mutation p.S267F 0.49 tolerated(0.07) benign(0.005) TCGA-D3-A8GP-06 16 2871619 2871619 C A PRSS21 3'UTR 0.29 TCGA-D3-A8GP-06 16 29883507 29883507 C T SEZ6L2 Splice_Site p.X901_splice 0.42 TCGA-D3-A8GP-06 16 30724967 30724967 C T SRCAP Missense_Mutation p.P810S 0.49 unknown(0) TCGA-D3-A8GP-06 16 31008311 31008311 C T STX1B Missense_Mutation p.D142N 0.51 deleterious(0) benign(0.111) TCGA-D3-A8GP-06 16 3336046 3336046 G A ZNF263 Silent p.V222V 0.22 TCGA-D3-A8GP-06 16 3406086 3406086 C T OR2C1 Missense_Mutation p.S49F 0.17 deleterious(0.01) benign(0.016) TCGA-D3-A8GP-06 16 3543864 3543864 C T C16orf90 Missense_Mutation p.R175H 0.79 tolerated_low_confidence(0.1) benign(0.1) TCGA-D3-A8GP-06 16 48201151 48201151 C T ABCC11 3'UTR 0.42 TCGA-D3-A8GP-06 16 50138990 50138990 C G HEATR3 3'UTR 0.48 TCGA-D3-A8GP-06 16 511431 511431 C T RAB11FIP3 Missense_Mutation p.P248S 0.21 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GP-06 16 55905609 55905609 G A CES5A Silent p.F144F 0.32 TCGA-D3-A8GP-06 16 61687910 61687910 C T CDH8 Missense_Mutation p.D668N 0.43 tolerated(0.46) probably_damaging(0.996) TCGA-D3-A8GP-06 16 67327935 67327935 C T KCTD19 Missense_Mutation p.R577Q 0.47 deleterious(0.03) benign(0.004) TCGA-D3-A8GP-06 16 70498950 70498950 C T FUK Intron 0.22 TCGA-D3-A8GP-06 16 71482164 71482164 G A ZNF23 Silent p.F588F 0.45 TCGA-D3-A8GP-06 16 77331191 77331191 C T ADAMTS18 Silent p.P932P 0.48 TCGA-D3-A8GP-06 16 78064792 78064792 G A CLEC3A 3'UTR 0.32 TCGA-D3-A8GP-06 16 88705021 88705021 C A IL17C 5'UTR 0.43 TCGA-D3-A8GP-06 16 88705022 88705022 A G IL17C 5'UTR 0.42 TCGA-D3-A8GP-06 16 88705023 88705023 A G IL17C 5'UTR 0.42 TCGA-D3-A8GP-06 16 89347269 89347269 G A ANKRD11 Missense_Mutation p.P1894L 0.19 benign(0.065) TCGA-D3-A8GP-06 16 9934797 9934797 C T GRIN2A Missense_Mutation p.G498D 0.68 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 17 10362679 10362679 G A MYH4 Silent p.F492F 0.45 TCGA-D3-A8GP-06 17 10438434 10438434 C T MYH2 Silent p.R712R 0.46 TCGA-D3-A8GP-06 17 12639595 12639595 C T MYOCD Missense_Mutation p.S178F 0.33 tolerated(0.08) benign(0.17) TCGA-D3-A8GP-06 17 15942941 15942941 A G NCOR1 Missense_Mutation p.F2254S 0.36 possibly_damaging(0.849) TCGA-D3-A8GP-06 17 18149693 18149693 C T FLII Silent p.R1045R 0.40 TCGA-D3-A8GP-06 17 26904713 26904713 T C SPAG5 3'UTR 0.50 TCGA-D3-A8GP-06 17 26943653 26943653 G A KIAA0100 Missense_Mutation p.S2047F 0.58 tolerated(0.14) benign(0.021) TCGA-D3-A8GP-06 17 33689959 33689959 G A SLFN11 Nonsense_Mutation p.Q290* 0.36 TCGA-D3-A8GP-06 17 38191545 38191545 G A MED24 Silent p.L128L 0.61 TCGA-D3-A8GP-06 17 39538571 39538571 C T KRT34 Silent p.R18R 0.29 TCGA-D3-A8GP-06 17 41835905 41835905 G A SOST Missense_Mutation p.P69S 0.47 tolerated(0.88) benign(0.093) TCGA-D3-A8GP-06 17 44626333 44626333 C T LRRC37A2 Silent p.T1276T 0.19 TCGA-D3-A8GP-06 17 44952635 44952635 A G WNT9B Missense_Mutation p.Y168C 0.33 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GP-06 17 48541605 48541605 C T ACSF2 Missense_Mutation p.P389S 0.14 tolerated(0.28) possibly_damaging(0.562) TCGA-D3-A8GP-06 17 48940731 48940731 G A TOB1 Silent p.L216L 0.83 TCGA-D3-A8GP-06 17 4927391 4927391 G A KIF1C Missense_Mutation p.R1086Q 0.38 deleterious_low_confidence(0) benign(0.238) TCGA-D3-A8GP-06 17 5050384 5050384 C T USP6 Missense_Mutation p.P776S 0.48 tolerated_low_confidence(0.39) probably_damaging(0.991) TCGA-D3-A8GP-06 17 5983955 5983955 C T WSCD1 5'UTR 0.48 TCGA-D3-A8GP-06 17 6978810 6978810 G A CLEC10A Intron 0.44 TCGA-D3-A8GP-06 17 72832361 72832361 C T TMEM104 Silent p.F342F 0.81 TCGA-D3-A8GP-06 17 7683501 7683501 G A DNAH2 Missense_Mutation p.E1917K 0.50 benign(0.15) TCGA-D3-A8GP-06 17 80049326 80049326 G A FASN Missense_Mutation p.R422C 0.26 deleterious(0.01) benign(0.345) TCGA-D3-A8GP-06 17 80320435 80320435 G A TEX19 Missense_Mutation p.E137K 0.76 tolerated(0.05) possibly_damaging(0.71) TCGA-D3-A8GP-06 17 9774096 9774120 GCTTCTCATTTCTAAGCTCAAAGCT - GLP2R Frame_Shift_Del p.K363Nfs*52 0.25 TCGA-D3-A8GP-06 18 13087197 13087197 C T CEP192 Missense_Mutation p.S1933F 0.49 tolerated(0.73) benign(0.269) TCGA-D3-A8GP-06 18 28588113 28588129 AATTTTTTGTACCTGTT - DSC3 Splice_Site p.X507_splice 0.42 TCGA-D3-A8GP-06 18 2885114 2885114 G A EMILIN2 Missense_Mutation p.R137Q 0.46 tolerated(0.1) possibly_damaging(0.656) TCGA-D3-A8GP-06 18 29038440 29038440 C T DSG3 Silent p.I83I 0.34 TCGA-D3-A8GP-06 18 29126825 29126825 T G DSG2 3'UTR 0.29 TCGA-D3-A8GP-06 18 29340392 29340392 C T SLC25A52 Missense_Mutation p.R88Q 0.42 tolerated(0.2) benign(0.033) TCGA-D3-A8GP-06 18 33722802 33722802 C T ELP2 Silent p.F288F 0.36 TCGA-D3-A8GP-06 18 346845 346845 C T COLEC12 Silent p.K259K 0.49 TCGA-D3-A8GP-06 18 3729187 3729187 C T DLGAP1 Silent p.S513S 0.09 TCGA-D3-A8GP-06 18 43319255 43319255 C T SLC14A1 Missense_Mutation p.S320L 0.34 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GP-06 18 43664139 43664139 A - ATP5A1 3'UTR 0.22 TCGA-D3-A8GP-06 18 47017789 47017789 G A RPL17 Missense_Mutation p.R23C 0.47 tolerated(0.11) benign(0) TCGA-D3-A8GP-06 18 52546686 52546686 G A RAB27B Splice_Site p.X80_splice 0.53 TCGA-D3-A8GP-06 18 55328567 55328567 C T ATP8B1 Missense_Mutation p.R849Q 0.46 tolerated(0.4) benign(0.009) TCGA-D3-A8GP-06 18 55334331 55334331 C T ATP8B1 Missense_Mutation p.D760N 0.49 tolerated(0.2) benign(0.02) TCGA-D3-A8GP-06 18 56203039 56203039 G A ALPK2 Silent p.T1460T 0.44 TCGA-D3-A8GP-06 18 57102939 57102939 C T CCBE1 3'UTR 0.67 TCGA-D3-A8GP-06 18 57136816 57136816 G A CCBE1 Missense_Mutation p.P97S 0.46 tolerated(0.08) probably_damaging(0.998) TCGA-D3-A8GP-06 18 57147470 57147470 C T CCBE1 Silent p.R71R 0.44 TCGA-D3-A8GP-06 18 61390317 61390317 G A SERPINB11 Missense_Mutation p.R288Q 0.50 tolerated(0.19) probably_damaging(0.933) TCGA-D3-A8GP-06 18 63481731 63481731 G A CDH7 Silent p.V172V 0.37 TCGA-D3-A8GP-06 18 63481732 63481732 G A CDH7 Missense_Mutation p.V173I 0.36 tolerated(1) benign(0.029) TCGA-D3-A8GP-06 18 66541973 66541973 C T CCDC102B Missense_Mutation p.S335F 0.41 tolerated(0.26) benign(0.037) TCGA-D3-A8GP-06 18 70205579 70205579 C T CBLN2 Silent p.V169V 0.42 TCGA-D3-A8GP-06 19 11998745 11998745 T G ZNF69 Missense_Mutation p.C3G 0.28 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-D3-A8GP-06 19 12433476 12433476 C T ZNF563 Nonsense_Mutation p.W18* 0.61 TCGA-D3-A8GP-06 19 14000162 14000162 G A C19orf57 Missense_Mutation p.P503S 0.34 deleterious(0.03) probably_damaging(0.932) TCGA-D3-A8GP-06 19 16045082 16045082 C G CYP4F11 Missense_Mutation p.R46P 0.22 deleterious(0.03) possibly_damaging(0.752) TCGA-D3-A8GP-06 19 16910763 16910763 C T NWD1 Silent p.L1176L 0.60 TCGA-D3-A8GP-06 19 17015042 17015042 G A CPAMD8 Silent p.S1462S 0.73 TCGA-D3-A8GP-06 19 17405603 17405603 C T ABHD8 Silent p.K271K 0.14 TCGA-D3-A8GP-06 19 17488047 17488047 G A PLVAP Silent p.S17S 0.33 TCGA-D3-A8GP-06 19 17835974 17835974 C T MAP1S Silent p.F140F 0.26 TCGA-D3-A8GP-06 19 17994532 17994532 G A SLC5A5 Missense_Mutation p.G429R 0.66 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GP-06 19 18085085 18085085 G A KCNN1 Missense_Mutation p.G130R 0.61 deleterious(0) possibly_damaging(0.774) TCGA-D3-A8GP-06 19 18779304 18779304 C T KLHL26 Missense_Mutation p.A366V 0.53 tolerated(1) benign(0.01) TCGA-D3-A8GP-06 19 19105108 19105108 G A SUGP2 3'UTR 0.52 TCGA-D3-A8GP-06 19 19655467 19655467 C T CILP2 Missense_Mutation p.P705S 0.55 tolerated(0.82) benign(0.001) TCGA-D3-A8GP-06 19 20229445 20229445 G A ZNF90 Missense_Mutation p.R361K 0.77 tolerated(0.37) benign(0.067) TCGA-D3-A8GP-06 19 2408479 2408479 C T TMPRSS9 Missense_Mutation p.A289V 0.35 deleterious(0.02) possibly_damaging(0.657) TCGA-D3-A8GP-06 19 31025807 31025807 C T ZNF536 Missense_Mutation p.R742C 0.28 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GP-06 19 3496700 3496700 C T DOHH Missense_Mutation p.G38D 0.32 tolerated(0.65) benign(0.001) TCGA-D3-A8GP-06 19 3496701 3496701 C T DOHH Missense_Mutation p.G38S 0.32 tolerated(0.68) benign(0.001) TCGA-D3-A8GP-06 19 36205839 36205839 C T ZBTB32 Missense_Mutation p.S104F 0.45 tolerated(0.06) probably_damaging(0.915) TCGA-D3-A8GP-06 19 36272083 36272083 C T ARHGAP33 Silent p.F338F 0.73 TCGA-D3-A8GP-06 19 36273501 36273501 G A ARHGAP33 Silent p.E411E 0.29 TCGA-D3-A8GP-06 19 36322248 36322248 C T NPHS1 Missense_Mutation p.E1113K 0.62 tolerated(0.53) benign(0.027) TCGA-D3-A8GP-06 19 3643272 3643272 G A PIP5K1C Missense_Mutation p.P540S 0.21 deleterious_low_confidence(0.03) benign(0.354) TCGA-D3-A8GP-06 19 38631897 38631897 C G SIPA1L3 Missense_Mutation p.R1073G 0.56 deleterious(0.04) probably_damaging(0.954) TCGA-D3-A8GP-06 19 38882751 38882751 C T SPRED3 Nonsense_Mutation p.R115* 0.29 TCGA-D3-A8GP-06 19 39788603 39788603 G A IFNL1 Splice_Site p.X84_splice 0.47 TCGA-D3-A8GP-06 19 41009864 41009864 C T SPTBN4 Missense_Mutation p.A497V 0.54 tolerated(0.12) possibly_damaging(0.579) TCGA-D3-A8GP-06 19 4231237 4231237 G A EBI3 Silent p.R39R 0.20 TCGA-D3-A8GP-06 19 4231238 4231238 T A EBI3 Missense_Mutation p.Y40N 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 19 43698696 43698696 C T PSG4 Missense_Mutation p.G347R 0.95 tolerated(0.11) probably_damaging(1) TCGA-D3-A8GP-06 19 43998861 43998861 G A PHLDB3 Missense_Mutation p.S381F 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 19 4442329 4442329 G A CHAF1A Missense_Mutation p.D921N 0.44 tolerated(0.21) benign(0.103) TCGA-D3-A8GP-06 19 44635333 44635333 C T ZNF225 Missense_Mutation p.S189L 0.21 deleterious(0.05) probably_damaging(0.917) TCGA-D3-A8GP-06 19 46915226 46915226 T A CCDC8 Missense_Mutation p.Q281L 0.35 benign(0.079) TCGA-D3-A8GP-06 19 47983161 47983161 G A KPTN Missense_Mutation p.P249L 0.34 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GP-06 19 48374724 48374724 G A SULT2A1 Silent p.F282F 0.58 TCGA-D3-A8GP-06 19 48830802 48830802 G A EMP3 Missense_Mutation p.E35K 0.65 tolerated(0.12) possibly_damaging(0.649) TCGA-D3-A8GP-06 19 48837268 48837268 C T TMEM143 Missense_Mutation p.E388K 0.80 tolerated(0.3) benign(0.012) TCGA-D3-A8GP-06 19 49164942 49164942 C T NTN5 Missense_Mutation p.E488K 0.41 tolerated_low_confidence(0.25) benign(0.004) TCGA-D3-A8GP-06 19 49217216 49217216 C T MAMSTR Silent p.P270P 0.53 TCGA-D3-A8GP-06 19 50157918 50157918 C T SCAF1 Missense_Mutation p.H1137Y 0.22 benign(0.291) TCGA-D3-A8GP-06 19 50794272 50794272 G A MYH14 Silent p.K1698K 0.60 TCGA-D3-A8GP-06 19 50794273 50794273 G A MYH14 Missense_Mutation p.E1699K 0.60 deleterious(0) possibly_damaging(0.46) TCGA-D3-A8GP-06 19 51171791 51171791 G A SHANK1 Silent p.P1142P 0.46 TCGA-D3-A8GP-06 19 5131295 5131295 C T KDM4B Silent p.V508V 0.56 TCGA-D3-A8GP-06 19 51410111 51410111 G A KLK4 3'UTR 0.34 TCGA-D3-A8GP-06 19 51563286 51563286 C T KLK13 Missense_Mutation p.E102K 0.30 tolerated(0.61) benign(0.197) TCGA-D3-A8GP-06 19 51647745 51647745 G A SIGLEC7 Nonsense_Mutation p.W172* 0.29 TCGA-D3-A8GP-06 19 51983808 51983808 G A CEACAM18 Missense_Mutation p.E153K 0.53 deleterious(0.02) probably_damaging(0.994) TCGA-D3-A8GP-06 19 52033118 52033118 G A SIGLEC6 Missense_Mutation p.P291L 0.49 tolerated(0.48) benign(0.047) TCGA-D3-A8GP-06 19 53269141 53269141 G A ZNF600 Missense_Mutation p.S623L 0.38 deleterious(0.02) benign(0.169) TCGA-D3-A8GP-06 19 53573479 53573479 G A ZNF160 Missense_Mutation p.P103L 0.34 tolerated(0.17) possibly_damaging(0.908) TCGA-D3-A8GP-06 19 54314369 54314369 C T NLRP12 Missense_Mutation p.G182R 0.64 tolerated(0.73) benign(0.02) TCGA-D3-A8GP-06 19 54481482 54481482 C T CACNG8 Silent p.L122L 0.75 TCGA-D3-A8GP-06 19 54930339 54930339 T A TTYH1 Nonsense_Mutation p.L55* 0.34 TCGA-D3-A8GP-06 19 55143069 55143069 A G LILRB1 Silent p.E63E 0.30 TCGA-D3-A8GP-06 19 55447703 55447703 G A NLRP7 Silent p.I742I 0.76 TCGA-D3-A8GP-06 19 56244097 56244097 A G NLRP9 Missense_Mutation p.L367S 0.53 deleterious(0) benign(0.248) TCGA-D3-A8GP-06 19 56416362 56416362 A G NLRP13 Missense_Mutation p.I855T 0.45 deleterious(0) benign(0.245) TCGA-D3-A8GP-06 19 56423470 56423470 T C NLRP13 Silent p.Q571Q 0.64 TCGA-D3-A8GP-06 19 56459512 56459512 G A NLRP8 Missense_Mutation p.A82T 0.26 tolerated(0.08) probably_damaging(0.939) TCGA-D3-A8GP-06 19 56539738 56539738 G A NLRP5 Silent p.P713P 0.29 TCGA-D3-A8GP-06 19 56561877 56561877 G A NLRP5 Missense_Mutation p.M1017I 0.40 tolerated(0.18) benign(0.076) TCGA-D3-A8GP-06 19 56572901 56572901 G A NLRP5 3'UTR 0.30 TCGA-D3-A8GP-06 19 58198235 58198235 G T ZNF551 Missense_Mutation p.A198S 0.42 tolerated(0.1) benign(0.192) TCGA-D3-A8GP-06 19 58216253 58216253 A G ZNF154 Missense_Mutation p.M43T 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-D3-A8GP-06 19 58264920 58264920 C T AC003006.7 Missense_Mutation p.S141L 0.24 tolerated(0.24) benign(0.008) TCGA-D3-A8GP-06 19 5831308 5831308 C T FUT6 3'UTR 0.17 TCGA-D3-A8GP-06 19 5831309 5831309 C T FUT6 3'UTR 0.17 TCGA-D3-A8GP-06 19 58805475 58805475 C T ZNF8 Nonsense_Mutation p.R101* 0.56 TCGA-D3-A8GP-06 19 6177320 6177320 C T ACSBG2 Silent p.L273L 0.43 TCGA-D3-A8GP-06 19 6974614 6974614 C T EMR4P RNA 0.43 TCGA-D3-A8GP-06 19 8138072 8138072 G A FBN3 Silent p.A2604A 0.23 TCGA-D3-A8GP-06 19 9064790 9064790 C T MUC16 Silent p.E7552E 0.57 TCGA-D3-A8GP-06 19 9069606 9069606 G A MUC16 Missense_Mutation p.S5947L 0.25 unknown(0) TCGA-D3-A8GP-06 19 9071642 9071642 C T MUC16 Silent p.T5268T 0.22 TCGA-D3-A8GP-06 19 9082915 9082915 G C MUC16 Missense_Mutation p.S2967C 0.24 unknown(0) TCGA-D3-A8GP-06 19 9090079 9090079 C T MUC16 Missense_Mutation p.G579E 0.57 unknown(0) TCGA-D3-A8GP-06 1 104114795 104114795 C T AMY2B Nonsense_Mutation p.Q78* 0.59 TCGA-D3-A8GP-06 1 104116338 104116338 T C AMY2B Silent p.D174D 0.31 TCGA-D3-A8GP-06 1 104203219 104203219 G A AMY1A Missense_Mutation p.G341E 0.40 deleterious(0.03) possibly_damaging(0.674) TCGA-D3-A8GP-06 1 109238808 109238808 G T PRPF38B Missense_Mutation p.M163I 0.69 deleterious(0.02) possibly_damaging(0.908) TCGA-D3-A8GP-06 1 110604157 110604157 C T ALX3 Nonsense_Mutation p.W208* 0.35 TCGA-D3-A8GP-06 1 11077001 11077001 G T TARDBP Missense_Mutation p.W113C 0.28 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GP-06 1 115537759 115537759 G A SYCP1 3'UTR 0.56 TCGA-D3-A8GP-06 1 118550710 118550710 C T SPAG17 Missense_Mutation p.G1515E 0.21 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GP-06 1 120510174 120510174 C T NOTCH2 Silent p.L445L 0.65 TCGA-D3-A8GP-06 1 12198418 12198418 C T TNFRSF8 Missense_Mutation p.P490S 0.62 tolerated(0.05) possibly_damaging(0.458) TCGA-D3-A8GP-06 1 12387765 12387765 C T VPS13D Missense_Mutation p.S2684F 0.33 possibly_damaging(0.865) TCGA-D3-A8GP-06 1 13669000 13669000 C T PRAMEF14 Missense_Mutation p.V444I 0.29 tolerated(0.05) benign(0.047) TCGA-D3-A8GP-06 1 152193200 152193200 C T HRNR Missense_Mutation p.G302E 0.50 unknown(0) TCGA-D3-A8GP-06 1 152586336 152586336 C T LCE3B Missense_Mutation p.P17L 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GP-06 1 155208384 155208384 G A GBA Missense_Mutation p.T171I 0.31 tolerated(0.47) benign(0.001) TCGA-D3-A8GP-06 1 155447916 155447916 C T ASH1L Missense_Mutation p.S1582N 0.41 tolerated_low_confidence(0.39) benign(0.004) TCGA-D3-A8GP-06 1 156006871 156006871 G A UBQLN4 Silent p.S568S 0.64 TCGA-D3-A8GP-06 1 156813264 156813264 T C INSRR Missense_Mutation p.T951A 0.41 tolerated(0.31) possibly_damaging(0.477) TCGA-D3-A8GP-06 1 158435504 158435504 G A OR10K1 Silent p.L51L 0.51 TCGA-D3-A8GP-06 1 158725101 158725101 C T OR6K6 Missense_Mutation p.P166S 0.61 tolerated(0.19) benign(0.01) TCGA-D3-A8GP-06 1 158812024 158812024 C T MNDA Silent p.S27S 0.46 TCGA-D3-A8GP-06 1 159163750 159163750 G A CADM3 Missense_Mutation p.G238E 0.30 tolerated(0.16) benign(0.03) TCGA-D3-A8GP-06 1 159558299 159558299 C T APCS Missense_Mutation p.S158F 0.36 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GP-06 1 159901248 159901248 A C IGSF9 Missense_Mutation p.V503G 0.40 deleterious(0.01) possibly_damaging(0.521) TCGA-D3-A8GP-06 1 160811048 160811048 C T CD244 Missense_Mutation p.E208K 0.34 tolerated(0.17) benign(0.407) TCGA-D3-A8GP-06 1 161018120 161018120 C T ARHGAP30 Silent p.E897E 0.69 TCGA-D3-A8GP-06 1 161561048 161561048 G A FCGR2C 5'Flank 0.48 TCGA-D3-A8GP-06 1 161682958 161682958 C T FCRLA Missense_Mutation p.P313S 0.42 deleterious(0.04) possibly_damaging(0.844) TCGA-D3-A8GP-06 1 162688923 162688923 C T DDR2 Nonsense_Mutation p.Q24* 0.37 TCGA-D3-A8GP-06 1 167666794 167666794 G A RCSD1 Missense_Mutation p.M311I 0.21 tolerated(0.18) benign(0.089) TCGA-D3-A8GP-06 1 167849384 167849384 G A ADCY10 Silent p.I395I 0.24 TCGA-D3-A8GP-06 1 169256575 169256575 G A NME7 Silent p.T240T 0.56 TCGA-D3-A8GP-06 1 172100401 172100401 A T DNM3 Missense_Mutation p.E544D 0.45 tolerated(0.16) benign(0.16) TCGA-D3-A8GP-06 1 175375631 175375631 G A TNR Missense_Mutation p.P74S 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 1 176927607 176927607 G A ASTN1 Missense_Mutation p.T537I 0.32 deleterious(0) possibly_damaging(0.876) TCGA-D3-A8GP-06 1 176998583 176998583 G A ASTN1 Intron 0.56 TCGA-D3-A8GP-06 1 17949637 17949637 C T ARHGEF10L Silent p.S389S 0.58 TCGA-D3-A8GP-06 1 181702607 181702607 C T CACNA1E Silent p.L995L 0.34 TCGA-D3-A8GP-06 1 181731775 181731775 T G CACNA1E Missense_Mutation p.I1557M 0.21 deleterious(0) possibly_damaging(0.639) TCGA-D3-A8GP-06 1 181753842 181753842 C T CACNA1E Missense_Mutation p.T1839I 0.23 tolerated(1) possibly_damaging(0.507) TCGA-D3-A8GP-06 1 186106725 186106725 C T HMCN1 Missense_Mutation p.L4560F 0.33 benign(0) TCGA-D3-A8GP-06 1 186106726 186106726 T A HMCN1 Missense_Mutation p.L4560H 0.32 benign(0.002) TCGA-D3-A8GP-06 1 186310198 186310198 A C TPR Missense_Mutation p.L1328V 0.60 benign(0.364) TCGA-D3-A8GP-06 1 18704793 18704793 C T IGSF21 Silent p.A459A 0.53 TCGA-D3-A8GP-06 1 192127822 192127822 A T RGS18 Nonsense_Mutation p.K19* 0.43 TCGA-D3-A8GP-06 1 192150504 192150504 C T RGS18 Silent p.F122F 0.54 TCGA-D3-A8GP-06 1 193091457 193091457 T A CDC73 Missense_Mutation p.W43R 0.51 deleterious(0) benign(0.01) TCGA-D3-A8GP-06 1 201757657 201757657 G C NAV1 Missense_Mutation p.E1019D 0.40 tolerated(1) benign(0.002) TCGA-D3-A8GP-06 1 201860936 201860936 C T SHISA4 Missense_Mutation p.P186S 0.53 deleterious(0.01) unknown(0) TCGA-D3-A8GP-06 1 202287210 202287210 C T LGR6 Silent p.P593P 0.59 TCGA-D3-A8GP-06 1 205065963 205065963 G A RBBP5 Missense_Mutation p.P415S 0.43 tolerated(0.57) benign(0.002) TCGA-D3-A8GP-06 1 206634486 206634486 C T SRGAP2 Silent p.P893P 0.34 TCGA-D3-A8GP-06 1 207107836 207107836 C T PIGR Missense_Mutation p.G545E 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 1 207850833 207850833 G A CR1L Missense_Mutation p.R66H 0.39 tolerated(0.09) benign(0.066) TCGA-D3-A8GP-06 1 207930449 207930449 A G CD46 Missense_Mutation p.K63R 0.36 tolerated(0.47) benign(0.007) TCGA-D3-A8GP-06 1 21137233 21137233 G A EIF4G3 Missense_Mutation p.A1531V 0.30 deleterious(0) probably_damaging(0.911) TCGA-D3-A8GP-06 1 214816478 214816478 G A CENPF Silent p.R1599R 0.46 TCGA-D3-A8GP-06 1 214819277 214819277 G A CENPF Missense_Mutation p.E2122K 0.63 probably_damaging(0.994) TCGA-D3-A8GP-06 1 216166364 216166364 T A USH2A Missense_Mutation p.N2268I 0.42 probably_damaging(1) TCGA-D3-A8GP-06 1 21880550 21880550 G A ALPL 5'UTR 0.36 TCGA-D3-A8GP-06 1 228559507 228559507 A G OBSCN Missense_Mutation p.T7967A 0.30 benign(0.009) TCGA-D3-A8GP-06 1 230398684 230398684 G A GALNT2 Missense_Mutation p.E416K 0.57 tolerated(0.21) benign(0.009) TCGA-D3-A8GP-06 1 240072538 240072538 C T CHRM3 3'UTR 0.46 TCGA-D3-A8GP-06 1 247463814 247463814 G A ZNF496 3'UTR 0.13 TCGA-D3-A8GP-06 1 247655135 247655135 G T OR2W5 RNA 0.40 TCGA-D3-A8GP-06 1 247737836 247737836 G A GCSAML 3'UTR 0.62 TCGA-D3-A8GP-06 1 248224014 248224014 T C OR2L3 Missense_Mutation p.F11L 0.36 deleterious(0.01) possibly_damaging(0.685) TCGA-D3-A8GP-06 1 248737528 248737528 C G OR2T34 Missense_Mutation p.R177S 0.58 deleterious(0) benign(0.433) TCGA-D3-A8GP-06 1 248790345 248790345 G A OR2T11 Missense_Mutation p.L29F 0.54 tolerated(1) benign(0.002) TCGA-D3-A8GP-06 1 25880448 25880448 C T LDLRAP1 Silent p.L42L 0.30 TCGA-D3-A8GP-06 1 27120800 27120800 C T PIGV Missense_Mutation p.P92L 0.67 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 1 36306796 36306796 C T AGO4 Silent p.F585F 0.36 TCGA-D3-A8GP-06 1 45965295 45965295 G A CCDC163P 5'UTR 0.62 TCGA-D3-A8GP-06 1 46086622 46086622 G A CCDC17 Missense_Mutation p.P518S 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 1 47264788 47264788 C T CYP4B1 Missense_Mutation p.S12F 0.61 tolerated(0.71) benign(0.001) TCGA-D3-A8GP-06 1 47325343 47325343 C T CYP4Z2P RNA 0.17 TCGA-D3-A8GP-06 1 50666604 50666604 C T ELAVL4 Silent p.I302I 0.41 TCGA-D3-A8GP-06 1 54059901 54059901 C T GLIS1 Silent p.K225K 0.30 TCGA-D3-A8GP-06 1 62740337 62740337 C G KANK4 Missense_Mutation p.D147H 0.58 deleterious(0.02) benign(0.388) TCGA-D3-A8GP-06 1 6314623 6314623 G A GPR153 Missense_Mutation p.P115S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 1 67787348 67787348 T A IL12RB2 Missense_Mutation p.V47D 0.28 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GP-06 1 74507600 74507600 C T LRRIQ3 Missense_Mutation p.E339K 0.52 tolerated(0.06) benign(0.033) TCGA-D3-A8GP-06 1 75684216 75684216 G A SLC44A5 Silent p.I496I 0.66 TCGA-D3-A8GP-06 1 7798291 7798291 C T CAMTA1 Nonsense_Mutation p.Q1311* 0.68 TCGA-D3-A8GP-06 1 79412073 79412073 C T ELTD1 Missense_Mutation p.E71K 0.25 deleterious_low_confidence(0.01) benign(0.362) TCGA-D3-A8GP-06 1 85331273 85331273 A C LPAR3 Silent p.S177S 0.63 TCGA-D3-A8GP-06 1 98015243 98015243 G A DPYD Missense_Mutation p.P466L 0.33 tolerated(0.38) benign(0.004) TCGA-D3-A8GP-06 20 1276959 1276959 C T SNPH Intron 0.76 TCGA-D3-A8GP-06 20 31673944 31673944 G A BPIFB4 Silent p.G300G 0.21 TCGA-D3-A8GP-06 20 34054830 34054830 C T CEP250 Missense_Mutation p.L178F 0.18 probably_damaging(1) TCGA-D3-A8GP-06 20 34240937 34240937 G A RBM12 Missense_Mutation p.P770S 0.24 deleterious(0.02) unknown(0) TCGA-D3-A8GP-06 20 35526320 35526320 G A SAMHD1 Nonsense_Mutation p.R551* 0.18 TCGA-D3-A8GP-06 20 35663865 35663865 A G RBL1 Silent p.S650S 0.17 TCGA-D3-A8GP-06 20 36854112 36854112 T G KIAA1755 Missense_Mutation p.E708D 0.12 tolerated(0.59) benign(0.059) TCGA-D3-A8GP-06 20 40790052 40790052 C T PTPRT Silent p.L874L 0.72 TCGA-D3-A8GP-06 20 42355024 42355024 C T GTSF1L Nonsense_Mutation p.W104* 0.66 TCGA-D3-A8GP-06 20 44588923 44588923 G A ZNF335 Silent p.P648P 0.17 TCGA-D3-A8GP-06 20 50408060 50408060 C T SALL4 Missense_Mutation p.R321Q 0.24 tolerated(0.06) benign(0.046) TCGA-D3-A8GP-06 20 51871863 51871863 G A TSHZ2 Silent p.E622E 0.77 TCGA-D3-A8GP-06 20 55940492 55940492 C T RAE1 Silent p.I123I 0.24 TCGA-D3-A8GP-06 20 60448841 60448841 G A CDH4 Missense_Mutation p.G312E 0.79 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GP-06 20 60927133 60927133 G A LAMA5 Silent p.I230I 0.19 TCGA-D3-A8GP-06 20 6093258 6093258 G A FERMT1 Missense_Mutation p.S133L 0.21 deleterious(0) benign(0.201) TCGA-D3-A8GP-06 20 60994652 60994652 C T RBBP8NL Missense_Mutation p.E18K 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 20 61473421 61473421 G A TCFL5 Missense_Mutation p.T470I 0.66 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GP-06 20 6751062 6751062 C G BMP2 Missense_Mutation p.H97D 0.17 tolerated(0.43) benign(0.025) TCGA-D3-A8GP-06 21 10934106 10934106 C T TPTE Missense_Mutation p.D291N 0.11 tolerated(0.16) possibly_damaging(0.55) TCGA-D3-A8GP-06 21 15746450 15746450 G A HSPA13 Missense_Mutation p.H302Y 0.38 tolerated(0.44) benign(0.021) TCGA-D3-A8GP-06 21 32185383 32185383 G A KRTAP8-1 Silent p.F52F 0.57 TCGA-D3-A8GP-06 21 40584633 40584633 C T BRWD1 Missense_Mutation p.D1287N 0.22 tolerated(0.06) benign(0.322) TCGA-D3-A8GP-06 21 43809079 43809079 C T TMPRSS3 Missense_Mutation p.G94E 0.29 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GP-06 21 45710980 45710980 G A AIRE Silent p.K294K 0.58 TCGA-D3-A8GP-06 21 45732883 45732883 C T PFKL Silent p.A150A 0.22 TCGA-D3-A8GP-06 21 45825100 45825100 G A TRPM2 Missense_Mutation p.D872N 0.20 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GP-06 21 47556292 47556292 G A FTCD 3'UTR 0.38 TCGA-D3-A8GP-06 22 21068802 21068802 G A PI4KA Missense_Mutation p.P1802L 0.65 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GP-06 22 26707824 26707824 A G SEZ6L Missense_Mutation p.E591G 0.34 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GP-06 22 26761404 26761404 G A SEZ6L Missense_Mutation p.R889Q 0.71 tolerated(0.1) probably_damaging(0.957) TCGA-D3-A8GP-06 22 36678566 36678566 G A MYH9 3'UTR 0.36 TCGA-D3-A8GP-06 22 37622819 37622819 G T RAC2 Nonsense_Mutation p.S158* 0.25 TCGA-D3-A8GP-06 22 39966858 39966858 C T CACNA1I Missense_Mutation p.S34F 0.67 deleterious_low_confidence(0.02) probably_damaging(0.946) TCGA-D3-A8GP-06 22 49103632 49103632 C T FAM19A5 Silent p.P122P 0.57 TCGA-D3-A8GP-06 22 51044074 51044074 C T MAPK8IP2 Silent p.F641F 0.33 TCGA-D3-A8GP-06 2 102781391 102781391 G A IL1R1 Silent p.R73R 0.70 TCGA-D3-A8GP-06 2 107040137 107040137 C T RGPD3 Nonsense_Mutation p.W1429* 0.40 TCGA-D3-A8GP-06 2 113676443 113676443 C T IL37 3'UTR 0.33 TCGA-D3-A8GP-06 2 11484220 11484220 C T ROCK2 Missense_Mutation p.E15K 0.45 tolerated_low_confidence(0.13) benign(0.003) TCGA-D3-A8GP-06 2 11911742 11911742 A T LPIN1 Missense_Mutation p.D227V 0.55 deleterious(0.03) benign(0.055) TCGA-D3-A8GP-06 2 128466273 128466273 A G WDR33 Silent p.P1253P 0.27 TCGA-D3-A8GP-06 2 131688698 131688698 G A ARHGEF4 Silent p.R56R 0.33 TCGA-D3-A8GP-06 2 131688704 131688704 C T ARHGEF4 Silent p.I58I 0.33 TCGA-D3-A8GP-06 2 133403900 133403900 G A GPR39 3'UTR 0.30 TCGA-D3-A8GP-06 2 135781107 135781107 G A MAP3K19 Intron 0.68 TCGA-D3-A8GP-06 2 138330034 138330034 G A THSD7B Missense_Mutation p.D1114N 0.41 deleterious(0.01) unknown(0) TCGA-D3-A8GP-06 2 138739116 138739116 G T HNMT Intron 0.33 TCGA-D3-A8GP-06 2 143676185 143676185 A G KYNU Silent p.L59L 0.61 TCGA-D3-A8GP-06 2 152409926 152409926 C T NEB Missense_Mutation p.D6573N 0.64 probably_damaging(0.975) TCGA-D3-A8GP-06 2 152527677 152527677 C A NEB Nonsense_Mutation p.E1456* 0.58 TCGA-D3-A8GP-06 2 157352729 157352729 T A GPD2 Splice_Site p.X92_splice 0.28 TCGA-D3-A8GP-06 2 160605247 160605247 C T MARCH7 Silent p.S482S 0.33 TCGA-D3-A8GP-06 2 165986623 165986623 C T SCN3A Missense_Mutation p.D917N 0.23 tolerated(0.43) benign(0) TCGA-D3-A8GP-06 2 167279862 167279862 G T SCN7A Silent p.I978I 0.22 TCGA-D3-A8GP-06 2 168725817 168725817 G A B3GALT1 Missense_Mutation p.E90K 0.37 deleterious(0.04) benign(0.41) TCGA-D3-A8GP-06 2 170177374 170177374 G A LRP2 Missense_Mutation p.R34C 0.61 probably_damaging(0.982) TCGA-D3-A8GP-06 2 17877690 17877690 C T SMC6 Missense_Mutation p.E800K 0.06 deleterious(0.02) benign(0.431) TCGA-D3-A8GP-06 2 179481699 179481699 C T TTN Missense_Mutation p.E15973K 0.49 TCGA-D3-A8GP-06 2 179614327 179614327 C T TTN Intron 0.58 TCGA-D3-A8GP-06 2 183593612 183593612 T A DNAJC10 Missense_Mutation p.V175E 0.39 deleterious(0) probably_damaging(0.953) TCGA-D3-A8GP-06 2 188211065 188211065 G A CALCRL Missense_Mutation p.S411F 0.27 tolerated(0.07) benign(0.004) TCGA-D3-A8GP-06 2 189862103 189862103 C T COL3A1 Silent p.P619P 0.31 TCGA-D3-A8GP-06 2 201888751 201888751 C T FAM126B 5'UTR 0.60 TCGA-D3-A8GP-06 2 201950227 201950227 C T NDUFB3 Silent p.S62S 0.26 TCGA-D3-A8GP-06 2 202074097 202074097 C T CASP10 Silent p.S409S 0.67 TCGA-D3-A8GP-06 2 204009448 204009448 G C NBEAL1 Missense_Mutation p.Q1629H 0.50 tolerated(0.07) possibly_damaging(0.498) TCGA-D3-A8GP-06 2 20838091 20838091 G A HS1BP3 Intron 0.75 TCGA-D3-A8GP-06 2 209153464 209153464 C T PIKFYVE Missense_Mutation p.P278L 0.30 tolerated(0.14) benign(0.357) TCGA-D3-A8GP-06 2 212483981 212483981 C T ERBB4 Missense_Mutation p.G741E 0.60 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GP-06 2 215813857 215813857 C T ABCA12 Missense_Mutation p.G2290E 0.58 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 2 215813858 215813858 C T ABCA12 Missense_Mutation p.G2290R 0.58 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 2 215865446 215865446 G A ABCA12 Silent p.P1054P 0.21 TCGA-D3-A8GP-06 2 219134104 219134104 C T AAMP Splice_Site p.X92_splice 0.66 TCGA-D3-A8GP-06 2 219562668 219562668 C T STK36 Missense_Mutation p.L1001F 0.28 deleterious(0.04) benign(0.162) TCGA-D3-A8GP-06 2 228144526 228144526 G A COL4A3 Missense_Mutation p.G715S 0.33 unknown(0) TCGA-D3-A8GP-06 2 228855765 228855765 C T SPHKAP Missense_Mutation p.G1637E 0.57 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GP-06 2 228886604 228886604 C T SPHKAP Missense_Mutation p.E174K 0.62 deleterious(0.01) possibly_damaging(0.742) TCGA-D3-A8GP-06 2 234847678 234847678 C T TRPM8 Missense_Mutation p.L129F 0.57 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GP-06 2 242757775 242757775 C T NEU4 Missense_Mutation p.P299S 0.67 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GP-06 2 27503096 27503096 G A DNAJC5G 3'UTR 0.61 TCGA-D3-A8GP-06 2 31593313 31593313 G A XDH Missense_Mutation p.P630S 0.69 deleterious(0.02) possibly_damaging(0.794) TCGA-D3-A8GP-06 2 42556041 42556041 G A EML4 Missense_Mutation p.G786E 0.54 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GP-06 2 43939452 43939452 G C PLEKHH2 Missense_Mutation p.R797P 0.26 deleterious(0) possibly_damaging(0.889) TCGA-D3-A8GP-06 2 56420143 56420143 C T CCDC85A Missense_Mutation p.R270C 0.28 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-D3-A8GP-06 2 56420464 56420464 G A CCDC85A Missense_Mutation p.G377S 0.71 tolerated_low_confidence(0.58) probably_damaging(0.968) TCGA-D3-A8GP-06 2 71597081 71597081 T A ZNF638 Silent p.L737L 0.59 TCGA-D3-A8GP-06 2 74750460 74750460 C T DQX1 Missense_Mutation p.D341N 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 2 89196842 89196842 T C IGKV5-2 Missense_Mutation p.L11P 0.20 deleterious(0) possibly_damaging(0.764) TCGA-D3-A8GP-06 2 89521280 89521280 A G IGKV2-28 Missense_Mutation p.F87L 0.74 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GP-06 2 96957130 96957130 C T SNRNP200 Silent p.Q807Q 0.30 TCGA-D3-A8GP-06 2 96961310 96961310 G A SNRNP200 Silent p.I586I 0.33 TCGA-D3-A8GP-06 3 100511564 100511564 C T ABI3BP Missense_Mutation p.R646Q 0.48 tolerated(0.13) benign(0.02) TCGA-D3-A8GP-06 3 101520746 101520746 A C NXPE3 Missense_Mutation p.K254T 0.37 tolerated(0.16) possibly_damaging(0.688) TCGA-D3-A8GP-06 3 11059638 11059638 G A SLC6A1 Nonsense_Mutation p.W116* 0.36 TCGA-D3-A8GP-06 3 111923085 111923085 G A SLC9C1 Missense_Mutation p.R718C 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GP-06 3 118937526 118937526 C T B4GALT4 Nonsense_Mutation p.W256* 0.41 TCGA-D3-A8GP-06 3 118937527 118937527 C T B4GALT4 Nonsense_Mutation p.W256* 0.41 TCGA-D3-A8GP-06 3 119133374 119133374 G A ARHGAP31 Silent p.R866R 0.51 TCGA-D3-A8GP-06 3 119155730 119155730 G A TMEM39A Silent p.S340S 0.53 TCGA-D3-A8GP-06 3 121097652 121097652 C T STXBP5L Missense_Mutation p.R780C 0.60 deleterious(0) probably_damaging(0.915) TCGA-D3-A8GP-06 3 121643219 121643219 G A SLC15A2 Missense_Mutation p.D342N 0.40 deleterious(0) probably_damaging(0.956) TCGA-D3-A8GP-06 3 124114126 124114126 G A KALRN Missense_Mutation p.G701S 0.31 deleterious(0.02) unknown(0) TCGA-D3-A8GP-06 3 126180829 126180829 G A ZXDC Missense_Mutation p.S559F 0.33 deleterious(0) probably_damaging(0.926) TCGA-D3-A8GP-06 3 128580634 128580634 G A RP11-723O4.9 5'Flank 0.50 TCGA-D3-A8GP-06 3 130312053 130312053 G A COL6A6 Missense_Mutation p.G1476D 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 3 132411501 132411501 C A NPHP3 Silent p.L824L 0.29 TCGA-D3-A8GP-06 3 132411502 132411502 A T NPHP3 Missense_Mutation p.L824Q 0.29 tolerated(0.62) benign(0.391) TCGA-D3-A8GP-06 3 137850078 137850078 G A A4GNT Silent p.L7L 0.34 TCGA-D3-A8GP-06 3 142606543 142606543 G A PCOLCE2 Missense_Mutation p.P54S 0.59 deleterious(0) possibly_damaging(0.728) TCGA-D3-A8GP-06 3 148927020 148927020 G A CP Silent p.F253F 0.42 TCGA-D3-A8GP-06 3 156422673 156422673 C T TIPARP Missense_Mutation p.S576F 0.43 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GP-06 3 161146925 161146925 C T RP11-3P17.5 RNA 0.42 TCGA-D3-A8GP-06 3 164700038 164700038 G A SI Missense_Mutation p.T1803I 0.53 tolerated(0.19) benign(0) TCGA-D3-A8GP-06 3 164906475 164906475 C G SLITRK3 Missense_Mutation p.G715A 0.51 tolerated(0.89) benign(0) TCGA-D3-A8GP-06 3 168806814 168806814 G A MECOM Missense_Mutation p.P1064S 0.48 tolerated(0.29) possibly_damaging(0.782) TCGA-D3-A8GP-06 3 169526479 169526479 G A LRRC34 Missense_Mutation p.S65F 0.45 tolerated(0.21) benign(0.028) TCGA-D3-A8GP-06 3 171321024 171321024 G A PLD1 Silent p.P1023P 0.43 TCGA-D3-A8GP-06 3 172642024 172642024 C T SPATA16 Missense_Mutation p.D438N 0.42 deleterious(0.01) possibly_damaging(0.728) TCGA-D3-A8GP-06 3 182587059 182587059 C T ATP11B Silent p.L602L 0.31 TCGA-D3-A8GP-06 3 189526294 189526294 C T TP63 Silent p.T186T 0.35 TCGA-D3-A8GP-06 3 194151025 194151025 C A ATP13A3 Missense_Mutation p.G882C 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 3 194151026 194151026 A G ATP13A3 Silent p.C881C 0.22 TCGA-D3-A8GP-06 3 196865219 196865219 C A DLG1 Missense_Mutation p.D286Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GP-06 3 33171428 33171428 C T CRTAP Intron 0.33 TCGA-D3-A8GP-06 3 38442412 38442412 C T XYLB Missense_Mutation p.S490L 0.45 tolerated(0.15) benign(0.002) TCGA-D3-A8GP-06 3 38651430 38651430 C T SCN5A Silent p.L243L 0.27 TCGA-D3-A8GP-06 3 39159561 39159561 A G TTC21A Missense_Mutation p.I240V 0.43 tolerated(0.12) benign(0.232) TCGA-D3-A8GP-06 3 48455426 48455426 C A PLXNB1 Missense_Mutation p.D1422Y 0.39 deleterious(0) benign(0.429) TCGA-D3-A8GP-06 3 49227305 49227305 G A C3orf84 Intron 0.41 TCGA-D3-A8GP-06 3 52293855 52293855 G A WDR82 Nonsense_Mutation p.R193* 0.49 TCGA-D3-A8GP-06 3 52556410 52556410 C T STAB1 Missense_Mutation p.S2177L 0.51 tolerated(0.56) benign(0.001) TCGA-D3-A8GP-06 3 53275181 53275181 C A TKT Missense_Mutation p.K102N 0.62 deleterious(0.02) possibly_damaging(0.834) TCGA-D3-A8GP-06 3 56044569 56044569 C T ERC2 Missense_Mutation p.E610K 0.41 tolerated(0.07) possibly_damaging(0.53) TCGA-D3-A8GP-06 3 56468712 56468712 T C ERC2 Silent p.G108G 0.32 TCGA-D3-A8GP-06 3 58619989 58619989 G A FAM3D 3'UTR 0.36 TCGA-D3-A8GP-06 3 66433716 66433716 G A LRIG1 Silent p.F727F 0.60 TCGA-D3-A8GP-06 3 67058348 67058348 G A KBTBD8 Missense_Mutation p.E449K 0.42 tolerated(0.37) benign(0.171) TCGA-D3-A8GP-06 3 69245538 69245538 G A FRMD4B Missense_Mutation p.P368S 0.44 tolerated(0.53) benign(0.005) TCGA-D3-A8GP-06 3 89259322 89259322 G A EPHA3 Missense_Mutation p.D156N 0.26 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GP-06 3 9027439 9027439 C T SRGAP3 Missense_Mutation p.D1022N 0.37 deleterious_low_confidence(0.02) benign(0.225) TCGA-D3-A8GP-06 3 9506282 9506282 G T SETD5 Nonsense_Mutation p.G884* 0.44 TCGA-D3-A8GP-06 4 100266406 100266406 G A ADH1C Missense_Mutation p.L93F 0.39 probably_damaging(0.988) TCGA-D3-A8GP-06 4 103528375 103528375 G A NFKB1 Missense_Mutation p.G675R 0.52 deleterious(0.02) possibly_damaging(0.519) TCGA-D3-A8GP-06 4 10446718 10446718 A G ZNF518B Missense_Mutation p.V412A 0.53 tolerated(0.21) benign(0.001) TCGA-D3-A8GP-06 4 110384432 110384459 CTGTTGCGTCTCAGGGATTTCCCTCTAC - SEC24B Frame_Shift_Del p.S170Ffs*82 0.27 TCGA-D3-A8GP-06 4 111397618 111397618 G A ENPEP Silent p.T16T 0.22 TCGA-D3-A8GP-06 4 113353516 113353516 C T ALPK1 Missense_Mutation p.S938F 0.54 tolerated(0.36) benign(0.086) TCGA-D3-A8GP-06 4 114267114 114267114 C T ANK2 Missense_Mutation p.S1436F 0.60 probably_damaging(0.945) TCGA-D3-A8GP-06 4 115769459 115769459 G A NDST4 Missense_Mutation p.P618S 0.38 deleterious(0.05) probably_damaging(0.99) TCGA-D3-A8GP-06 4 118005259 118005259 C A TRAM1L1 3'UTR 0.33 TCGA-D3-A8GP-06 4 120192993 120192993 G - USP53 Frame_Shift_Del p.G660Efs*11 0.33 TCGA-D3-A8GP-06 4 123305104 123305104 G A ADAD1 Missense_Mutation p.R171Q 0.43 tolerated(0.3) benign(0.002) TCGA-D3-A8GP-06 4 126411276 126411276 C T FAT4 Silent p.H4433H 0.39 TCGA-D3-A8GP-06 4 126411277 126411277 C T FAT4 Missense_Mutation p.P4434S 0.38 probably_damaging(0.998) TCGA-D3-A8GP-06 4 154649371 154649371 C T RNF175 Missense_Mutation p.G130E 0.37 tolerated(0.08) possibly_damaging(0.711) TCGA-D3-A8GP-06 4 17847271 17847271 C T NCAPG 3'Flank 0.55 TCGA-D3-A8GP-06 4 187540311 187540311 G A FAT1 Nonsense_Mutation p.Q2477* 0.48 TCGA-D3-A8GP-06 4 25783878 25783878 G A SEL1L3 Missense_Mutation p.P815S 0.50 tolerated(0.07) benign(0.044) TCGA-D3-A8GP-06 4 2665009 2665009 A G FAM193A Silent p.T400T 0.59 TCGA-D3-A8GP-06 4 37857345 37857345 T G PGM2 Missense_Mutation p.C573W 0.42 deleterious(0) possibly_damaging(0.84) TCGA-D3-A8GP-06 4 40144409 40144409 G A N4BP2 Missense_Mutation p.M1634I 0.43 tolerated(0.32) benign(0.015) TCGA-D3-A8GP-06 4 4199632 4199632 C T OTOP1 Missense_Mutation p.G310E 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GP-06 4 42457597 42457597 T C ATP8A1 Missense_Mutation p.N880S 0.29 tolerated(0.53) benign(0.049) TCGA-D3-A8GP-06 4 48622751 48622751 G A FRYL Silent p.S73S 0.51 TCGA-D3-A8GP-06 4 52860874 52860874 G A LRRC66 Missense_Mutation p.P772S 0.56 tolerated(0.41) benign(0.001) TCGA-D3-A8GP-06 4 62758612 62758612 A T LPHN3 Missense_Mutation p.E505D 0.39 tolerated(0.92) benign(0.003) TCGA-D3-A8GP-06 4 66467540 66467540 G C EPHA5 Missense_Mutation p.F243L 0.39 deleterious(0) probably_damaging(0.914) TCGA-D3-A8GP-06 4 68776943 68776943 C T TMPRSS11A 3'UTR 0.29 TCGA-D3-A8GP-06 4 71347468 71347468 C T MUC7 Missense_Mutation p.S336L 0.46 tolerated_low_confidence(0.39) unknown(0) TCGA-D3-A8GP-06 4 71508875 71508875 G A ENAM Missense_Mutation p.E578K 0.48 deleterious(0.03) benign(0.105) TCGA-D3-A8GP-06 4 74283292 74283292 C T ALB Missense_Mutation p.P445L 0.44 deleterious(0.04) possibly_damaging(0.654) TCGA-D3-A8GP-06 4 77357351 77357351 G A SHROOM3 Missense_Mutation p.G49E 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 4 77663074 77663074 C T SHROOM3 Missense_Mutation p.R1250C 0.68 tolerated(0.26) benign(0.001) TCGA-D3-A8GP-06 4 84406257 84406257 G A FAM175A 5'UTR 0.46 TCGA-D3-A8GP-06 4 845594 845594 G A GAK Missense_Mutation p.S1151L 0.43 tolerated(0.46) benign(0) TCGA-D3-A8GP-06 4 85699676 85699676 C A WDFY3 Missense_Mutation p.D1500Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GP-06 4 85699677 85699677 C T WDFY3 Silent p.Q1499Q 0.39 TCGA-D3-A8GP-06 5 101815914 101815914 C T SLCO6A1 Missense_Mutation p.E195K 0.31 tolerated(0.57) possibly_damaging(0.484) TCGA-D3-A8GP-06 5 101834439 101834439 C T SLCO6A1 Missense_Mutation p.G37E 0.57 tolerated(1) benign(0) TCGA-D3-A8GP-06 5 102612207 102612207 G A C5orf30 Missense_Mutation p.R196Q 0.54 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D3-A8GP-06 5 135692794 135692794 C T TRPC7 Silent p.T94T 0.61 TCGA-D3-A8GP-06 5 13735322 13735322 G A DNAH5 Silent p.F3893F 0.56 TCGA-D3-A8GP-06 5 13770911 13770911 G A DNAH5 Silent p.G3184G 0.25 TCGA-D3-A8GP-06 5 13923415 13923415 C T DNAH5 Missense_Mutation p.A138T 0.30 possibly_damaging(0.483) TCGA-D3-A8GP-06 5 13931332 13931332 C T DNAH5 Missense_Mutation p.E27K 0.33 benign(0.292) TCGA-D3-A8GP-06 5 140182795 140182795 G A PCDHA3 Silent p.E671E 0.55 TCGA-D3-A8GP-06 5 140202183 140202183 G A PCDHA5 Missense_Mutation p.E275K 0.70 tolerated_low_confidence(0.08) benign(0.381) TCGA-D3-A8GP-06 5 140221547 140221547 C T PCDHA8 Missense_Mutation p.A214V 0.62 tolerated_low_confidence(0.08) benign(0.401) TCGA-D3-A8GP-06 5 140308873 140308873 G A PCDHAC1 Missense_Mutation p.R799Q 0.54 tolerated(0.35) benign(0.003) TCGA-D3-A8GP-06 5 140308874 140308874 G A PCDHAC1 Silent p.R799R 0.54 TCGA-D3-A8GP-06 5 140433034 140433034 A G PCDHB1 Missense_Mutation p.N660S 0.68 tolerated(0.07) benign(0.028) TCGA-D3-A8GP-06 5 140503831 140503831 G A PCDHB4 Missense_Mutation p.E751K 0.57 deleterious_low_confidence(0.02) benign(0.052) TCGA-D3-A8GP-06 5 140603834 140603834 G A PCDHB14 Missense_Mutation p.E253K 0.63 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GP-06 5 140712177 140712177 C T PCDHGA1 Silent p.L642L 0.37 TCGA-D3-A8GP-06 5 140735209 140735209 C T PCDHGA4 Missense_Mutation p.P148S 0.56 deleterious_low_confidence(0.03) possibly_damaging(0.817) TCGA-D3-A8GP-06 5 140745212 140745212 C T PCDHGA5 Missense_Mutation p.P439S 0.28 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GP-06 5 140788486 140788486 C T PCDHGB6 Silent p.P239P 0.28 TCGA-D3-A8GP-06 5 141336288 141336288 T A PCDH12 Missense_Mutation p.M377L 0.28 tolerated(0.12) benign(0.02) TCGA-D3-A8GP-06 5 142661565 142661566 - A NR3C1 Frame_Shift_Ins p.L742Ffs*3 0.36 TCGA-D3-A8GP-06 5 14291193 14291193 C T TRIO Silent p.D303D 0.48 TCGA-D3-A8GP-06 5 148632327 148632327 C T ABLIM3 Missense_Mutation p.P622L 0.28 deleterious(0) probably_damaging(0.946) TCGA-D3-A8GP-06 5 151771876 151771876 G A NMUR2 Missense_Mutation p.T375I 0.35 tolerated(0.17) benign(0.004) TCGA-D3-A8GP-06 5 153433371 153433371 G A MFAP3 3'UTR 0.78 TCGA-D3-A8GP-06 5 154397075 154397075 A G KIF4B Missense_Mutation p.N1219S 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.507) TCGA-D3-A8GP-06 5 176025267 176025267 G A GPRIN1 Silent p.S523S 0.23 TCGA-D3-A8GP-06 5 176836473 176836473 G A F12 Missense_Mutation p.S19L 0.11 tolerated(0.39) benign(0.17) TCGA-D3-A8GP-06 5 178506724 178506724 C T ZNF354C Missense_Mutation p.R431W 0.30 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GP-06 5 178580594 178580594 G A ADAMTS2 Silent p.F471F 0.42 TCGA-D3-A8GP-06 5 178989589 178989589 C T RUFY1 Missense_Mutation p.P176S 0.35 deleterious(0.02) possibly_damaging(0.698) TCGA-D3-A8GP-06 5 180056291 180056291 C T FLT4 Missense_Mutation p.R318Q 0.32 tolerated(0.61) benign(0.006) TCGA-D3-A8GP-06 5 180338520 180338520 C T BTNL8 Silent p.I193I 0.31 TCGA-D3-A8GP-06 5 180432406 180432406 G A BTNL3 Missense_Mutation p.R312K 0.51 tolerated(0.29) benign(0.026) TCGA-D3-A8GP-06 5 195323 195323 G A LRRC14B Missense_Mutation p.R467Q 0.35 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GP-06 5 31508878 31508878 A G DROSHA Silent p.S479S 0.50 TCGA-D3-A8GP-06 5 33448701 33448701 A C TARS Missense_Mutation p.K65Q 0.24 tolerated(0.07) possibly_damaging(0.873) TCGA-D3-A8GP-06 5 41047842 41047842 C T MROH2B Nonsense_Mutation p.W570* 0.30 TCGA-D3-A8GP-06 5 44310546 44310546 C T FGF10 Missense_Mutation p.G138R 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 5 61847064 61847064 G A IPO11 Silent p.V827V 0.35 TCGA-D3-A8GP-06 5 76129152 76129152 C T F2RL1 Silent p.F240F 0.36 TCGA-D3-A8GP-06 5 79084899 79084899 G A CMYA5 Silent p.Q3887Q 0.56 TCGA-D3-A8GP-06 5 80388654 80388654 G A RASGRF2 Silent p.G475G 0.35 TCGA-D3-A8GP-06 5 90046457 90046457 A G GPR98 Missense_Mutation p.I3688M 0.29 benign(0.06) TCGA-D3-A8GP-06 5 90052271 90052271 G A GPR98 Missense_Mutation p.D3861N 0.39 probably_damaging(0.956) TCGA-D3-A8GP-06 5 94230397 94230397 G A MCTP1 Missense_Mutation p.S599F 0.62 deleterious(0.04) benign(0.223) TCGA-D3-A8GP-06 5 94999742 94999742 C T SPATA9 Missense_Mutation p.G130D 0.22 tolerated(0.15) benign(0.426) TCGA-D3-A8GP-06 6 110746236 110746236 G A SLC22A16 Missense_Mutation p.P525L 0.87 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 6 116756873 116756873 C T DSE Silent p.F414F 0.92 TCGA-D3-A8GP-06 6 117237218 117237218 G A RFX6 Silent p.L276L 0.93 TCGA-D3-A8GP-06 6 127611039 127611039 G A ECHDC1 Missense_Mutation p.A300V 0.94 tolerated(0.14) benign(0.128) TCGA-D3-A8GP-06 6 127765220 127765220 G A KIAA0408 3'UTR 1.00 TCGA-D3-A8GP-06 6 128134538 128134538 G A THEMIS Silent p.I416I 0.92 TCGA-D3-A8GP-06 6 129637295 129637295 G A LAMA2 Missense_Mutation p.G1346E 0.95 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 6 132032145 132032145 C T CTAGE9 Missense_Mutation p.G5S 0.68 tolerated_low_confidence(0.26) benign(0.138) TCGA-D3-A8GP-06 6 132032154 132032154 C T CTAGE9 Missense_Mutation p.E2K 0.59 tolerated_low_confidence(0.15) benign(0.045) TCGA-D3-A8GP-06 6 132892362 132892362 A G TAAR6 Missense_Mutation p.Y301C 0.93 deleterious(0) probably_damaging(0.914) TCGA-D3-A8GP-06 6 133834106 133834106 G A EYA4 Nonsense_Mutation p.W477* 0.91 TCGA-D3-A8GP-06 6 139609941 139609941 C T TXLNB Silent p.K32K 0.94 TCGA-D3-A8GP-06 6 147124120 147124120 G A ADGB Intron 0.94 TCGA-D3-A8GP-06 6 148848650 148848650 C T SASH1 Missense_Mutation p.S449F 0.96 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GP-06 6 152540201 152540201 G C SYNE1 Silent p.L7327L 0.91 TCGA-D3-A8GP-06 6 167719520 167719520 G A UNC93A Missense_Mutation p.A320T 0.44 tolerated(0.65) benign(0.001) TCGA-D3-A8GP-06 6 25726649 25726649 C T HIST1H2AA Missense_Mutation p.R36H 0.46 tolerated_low_confidence(0.06) benign(0.065) TCGA-D3-A8GP-06 6 26156945 26156945 G A HIST1H1E Silent p.K109K 0.34 TCGA-D3-A8GP-06 6 29323988 29323988 C T OR5V1 5'UTR 0.59 TCGA-D3-A8GP-06 6 30632994 30632994 G A DHX16 Missense_Mutation p.R327W 0.21 deleterious(0.01) unknown(0) TCGA-D3-A8GP-06 6 31084402 31084402 C T CDSN Silent p.V330V 0.53 TCGA-D3-A8GP-06 6 31639686 31639686 C T CSNK2B-LY6G5B-1181 3'UTR 0.53 TCGA-D3-A8GP-06 6 32714117 32714117 C T HLA-DQA2 Silent p.F238F 0.37 TCGA-D3-A8GP-06 6 34003956 34003956 A C GRM4 Missense_Mutation p.I644S 0.38 deleterious(0) possibly_damaging(0.903) TCGA-D3-A8GP-06 6 36104724 36104724 G A MAPK13 Missense_Mutation p.D227N 0.41 tolerated(0.09) probably_damaging(0.998) TCGA-D3-A8GP-06 6 38866096 38866096 C T DNAH8 Silent p.I2784I 0.49 TCGA-D3-A8GP-06 6 4032692 4032692 C T PRPF4B Missense_Mutation p.S314L 0.45 deleterious_low_confidence(0.01) benign(0.027) TCGA-D3-A8GP-06 6 42637834 42637834 C T UBR2 Missense_Mutation p.P1296S 0.36 tolerated(0.43) benign(0.007) TCGA-D3-A8GP-06 6 49754814 49754814 C T PGK2 Missense_Mutation p.M29I 0.46 tolerated(0.3) benign(0.009) TCGA-D3-A8GP-06 6 55620354 55620354 C T BMP5 Missense_Mutation p.V448I 0.37 deleterious(0) probably_damaging(0.977) TCGA-D3-A8GP-06 6 57246833 57246833 C T PRIM2 Missense_Mutation p.P187L 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GP-06 6 76568656 76568656 C A MYO6 Silent p.I473I 0.90 TCGA-D3-A8GP-06 7 105664897 105664897 T A CDHR3 Missense_Mutation p.I716N 0.44 deleterious(0) possibly_damaging(0.794) TCGA-D3-A8GP-06 7 111405199 111405199 C T DOCK4 Missense_Mutation p.G1323E 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 7 1132174 1132174 C T GPER1 Silent p.V270V 0.47 TCGA-D3-A8GP-06 7 120595788 120595788 T A ING3 Intron 0.60 TCGA-D3-A8GP-06 7 123593523 123593523 C T SPAM1 5'UTR 0.50 TCGA-D3-A8GP-06 7 128489403 128489403 G A FLNC Missense_Mutation p.R1657Q 0.52 tolerated(0.11) benign(0.166) TCGA-D3-A8GP-06 7 134254274 134254274 G A AKR1B15 Missense_Mutation p.G143E 0.51 deleterious(0.02) possibly_damaging(0.624) TCGA-D3-A8GP-06 7 134878116 134878116 G A WDR91 Missense_Mutation p.S509F 0.50 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GP-06 7 134896311 134896311 G A WDR91 5'Flank 0.45 TCGA-D3-A8GP-06 7 137791443 137791443 G A AKR1D1 Silent p.G223G 0.51 TCGA-D3-A8GP-06 7 140111629 140111629 C T RAB19 Intron 0.46 TCGA-D3-A8GP-06 7 142032067 142032067 C T TRBV7-1 Missense_Mutation p.A10V 0.54 tolerated(1) benign(0.012) TCGA-D3-A8GP-06 7 142131675 142131675 G A TRBV5-6 Missense_Mutation p.P27L 0.51 deleterious(0.01) probably_damaging(0.923) TCGA-D3-A8GP-06 7 142494091 142494091 C T TRBJ2-1 Silent p.T15T 0.73 TCGA-D3-A8GP-06 7 142609858 142609858 G A TRPV5 Silent p.Y526Y 0.57 TCGA-D3-A8GP-06 7 143085994 143085994 C T ZYX Silent p.I483I 0.47 TCGA-D3-A8GP-06 7 143956222 143956222 A T OR2A7 Missense_Mutation p.F167Y 0.17 tolerated(0.1) probably_damaging(0.974) TCGA-D3-A8GP-06 7 143956223 143956223 A T OR2A7 Missense_Mutation p.F167I 0.16 deleterious(0) possibly_damaging(0.892) TCGA-D3-A8GP-06 7 150174918 150174918 G A GIMAP8 3'UTR 0.57 TCGA-D3-A8GP-06 7 150269298 150269298 G A GIMAP4 Missense_Mutation p.G47E 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 7 150697635 150697635 G A NOS3 Nonsense_Mutation p.W394* 0.37 TCGA-D3-A8GP-06 7 151046296 151046296 C T NUB1 Silent p.I109I 0.42 TCGA-D3-A8GP-06 7 151805267 151805267 C T GALNT11 Missense_Mutation p.S286L 0.59 deleterious(0.04) benign(0.289) TCGA-D3-A8GP-06 7 1539974 1539974 G A INTS1 Silent p.I126I 0.33 TCGA-D3-A8GP-06 7 155095542 155095542 C T INSIG1 Intron 0.18 TCGA-D3-A8GP-06 7 15652169 15652169 G A MEOX2 Missense_Mutation p.A253V 0.49 tolerated_low_confidence(0.31) benign(0.01) TCGA-D3-A8GP-06 7 17378907 17378907 C T AHR Silent p.F486F 0.46 TCGA-D3-A8GP-06 7 18706084 18706084 T G HDAC9 Silent p.A572A 0.38 TCGA-D3-A8GP-06 7 20739490 20739490 G A ABCB5 Missense_Mutation p.E733K 0.39 tolerated(0.36) benign(0.098) TCGA-D3-A8GP-06 7 2594071 2594071 G A BRAT1 5'UTR 0.57 TCGA-D3-A8GP-06 7 27140816 27140816 G A HOXA2 Silent p.S220S 0.52 TCGA-D3-A8GP-06 7 2946397 2946397 G A CARD11 Missense_Mutation p.P1114S 0.44 deleterious(0) possibly_damaging(0.768) TCGA-D3-A8GP-06 7 33192369 33192369 G T BBS9 Missense_Mutation p.A57S 0.11 tolerated(0.72) benign(0.06) TCGA-D3-A8GP-06 7 34118637 34118637 C T BMPER Missense_Mutation p.S416L 0.43 deleterious(0) probably_damaging(0.975) TCGA-D3-A8GP-06 7 44148544 44148544 G A AEBP1 Silent p.E329E 0.25 TCGA-D3-A8GP-06 7 50737501 50737501 G A GRB10 Missense_Mutation p.P141L 0.61 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GP-06 7 62752683 62752683 C T ZNF733P RNA 0.22 TCGA-D3-A8GP-06 7 64291840 64291840 C T ZNF138 Missense_Mutation p.R48C 0.38 deleterious(0.01) benign(0.045) TCGA-D3-A8GP-06 7 64864169 64864169 C T ZNF92 Missense_Mutation p.S381F 0.40 tolerated(0.25) possibly_damaging(0.574) TCGA-D3-A8GP-06 7 75511187 75511187 C T RHBDD2 Silent p.P73P 0.42 TCGA-D3-A8GP-06 7 82583995 82583995 T A PCLO Missense_Mutation p.T2092S 0.38 unknown(0) TCGA-D3-A8GP-06 7 83590988 83590988 T C SEMA3A Missense_Mutation p.H672R 0.35 tolerated(0.47) benign(0.009) TCGA-D3-A8GP-06 7 98249051 98249051 C T NPTX2 Missense_Mutation p.R175C 0.29 deleterious(0) possibly_damaging(0.462) TCGA-D3-A8GP-06 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GP-06 7 99032826 99032826 G A ATP5J2-PTCD1 Missense_Mutation p.R63C 0.38 tolerated_low_confidence(0.27) benign(0.004) TCGA-D3-A8GP-06 7 99365990 99365990 G A CYP3A4 Silent p.F219F 0.38 TCGA-D3-A8GP-06 8 105001543 105001543 G A RIMS2 Missense_Mutation p.E980K 0.34 tolerated_low_confidence(0.8) benign(0.096) TCGA-D3-A8GP-06 8 110437383 110437383 C T PKHD1L1 Missense_Mutation p.H923Y 0.63 tolerated(0.1) benign(0.055) TCGA-D3-A8GP-06 8 119391641 119391641 C T SAMD12 3'UTR 0.25 TCGA-D3-A8GP-06 8 12586533 12586533 C A LONRF1 Silent p.V629V 0.49 TCGA-D3-A8GP-06 8 133894194 133894194 G A TG Missense_Mutation p.G242E 0.47 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GP-06 8 141742743 141742743 G A PTK2 Intron 0.18 TCGA-D3-A8GP-06 8 142228761 142228761 G A SLC45A4 Silent p.F275F 0.49 TCGA-D3-A8GP-06 8 143823227 143823227 C T SLURP1 Missense_Mutation p.E58K 0.38 deleterious(0.01) possibly_damaging(0.698) TCGA-D3-A8GP-06 8 144812402 144812402 G A FAM83H Silent p.F117F 0.44 TCGA-D3-A8GP-06 8 144992773 144992773 C T PLEC Missense_Mutation p.G3876E 0.50 possibly_damaging(0.867) TCGA-D3-A8GP-06 8 145109798 145109798 C T OPLAH Missense_Mutation p.D810N 0.44 tolerated(0.6) benign(0.014) TCGA-D3-A8GP-06 8 145772842 145772842 G A ARHGAP39 Missense_Mutation p.A543V 0.73 tolerated(0.37) benign(0.007) TCGA-D3-A8GP-06 8 25364519 25364519 C T CDCA2 Silent p.C779C 0.16 TCGA-D3-A8GP-06 8 2815281 2815281 C T CSMD1 Missense_Mutation p.G3251S 0.44 probably_damaging(1) TCGA-D3-A8GP-06 8 3165990 3165990 G A CSMD1 Missense_Mutation p.P1223S 0.47 probably_damaging(0.999) TCGA-D3-A8GP-06 8 37791877 37791877 G A GOT1L1 Silent p.L400L 0.47 TCGA-D3-A8GP-06 8 38066663 38066663 C T BAG4 Missense_Mutation p.P256S 0.53 tolerated(0.32) benign(0.215) TCGA-D3-A8GP-06 8 39468127 39468127 C T ADAM18 Nonsense_Mutation p.Q142* 0.45 TCGA-D3-A8GP-06 8 39678636 39678636 G A ADAM2 Missense_Mutation p.S133L 0.45 deleterious(0.02) benign(0.316) TCGA-D3-A8GP-06 8 52321598 52321598 G A PXDNL Silent p.F862F 0.45 TCGA-D3-A8GP-06 8 53580670 53580670 T A RB1CC1 Missense_Mutation p.I362F 0.52 deleterious(0) benign(0.107) TCGA-D3-A8GP-06 8 54147436 54147436 T A OPRK1 Nonsense_Mutation p.K165* 0.41 TCGA-D3-A8GP-06 8 55538313 55538313 A G RP1 Missense_Mutation p.K624R 0.51 tolerated(0.34) benign(0.006) TCGA-D3-A8GP-06 8 55539707 55539707 C T RP1 Missense_Mutation p.H1089Y 0.59 deleterious(0.02) benign(0.418) TCGA-D3-A8GP-06 8 57214112 57214112 C T SDR16C5 Missense_Mutation p.G286E 0.46 tolerated(0.27) benign(0.145) TCGA-D3-A8GP-06 8 57221548 57221548 G A SDR16C5 Silent p.D168D 0.40 TCGA-D3-A8GP-06 8 57353974 57353974 C G PENK Missense_Mutation p.E221Q 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GP-06 8 62212756 62212756 G A CLVS1 Missense_Mutation p.D124N 0.53 tolerated(0.12) possibly_damaging(0.844) TCGA-D3-A8GP-06 8 63502283 63502283 G A NKAIN3 Nonsense_Mutation p.W68* 0.50 TCGA-D3-A8GP-06 8 67578437 67578437 A C VCPIP1 Missense_Mutation p.Y253D 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 8 67752246 67752246 C T SGK3 Silent p.F250F 0.40 TCGA-D3-A8GP-06 8 69046391 69046391 G A PREX2 Silent p.Q1288Q 0.39 TCGA-D3-A8GP-06 8 69434172 69434172 G A C8orf34 Missense_Mutation p.E302K 0.39 deleterious(0.04) possibly_damaging(0.69) TCGA-D3-A8GP-06 8 88885234 88885234 C T DCAF4L2 Silent p.V322V 0.49 TCGA-D3-A8GP-06 8 88885433 88885433 C T DCAF4L2 Missense_Mutation p.G256E 0.43 tolerated(0.93) benign(0.041) TCGA-D3-A8GP-06 8 93003895 93003895 C T RUNX1T1 Silent p.R332R 0.49 TCGA-D3-A8GP-06 9 104193080 104193080 G A ALDOB Silent p.I30I 0.90 TCGA-D3-A8GP-06 9 107528775 107528775 T G NIPSNAP3B Missense_Mutation p.F77C 0.39 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GP-06 9 119094732 119094732 C T PAPPA Nonsense_Mutation p.Q1128* 0.93 TCGA-D3-A8GP-06 9 125512044 125512044 T C OR1L6 5'Flank 0.95 TCGA-D3-A8GP-06 9 131864792 131864792 A T CRAT Missense_Mutation p.Y173N 0.97 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.94 benign(0.399) TCGA-D3-A8GP-06 9 137716634 137716634 G A COL5A1 Silent p.L1629L 0.81 TCGA-D3-A8GP-06 9 138376971 138376971 C T PPP1R26 Silent p.S205S 0.97 TCGA-D3-A8GP-06 9 138556072 138556072 G A LCN9 Missense_Mutation p.G54E 0.89 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GP-06 9 39085783 39085783 G A CNTNAP3 Missense_Mutation p.S1131L 0.91 deleterious(0.04) probably_damaging(0.967) TCGA-D3-A8GP-06 9 464164 464164 C T DOCK8 Missense_Mutation p.S2082F 0.97 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-D3-A8GP-06 9 464165 464165 C T DOCK8 Silent p.S2082S 0.97 TCGA-D3-A8GP-06 9 6589218 6589218 G A GLDC Silent p.F519F 0.90 TCGA-D3-A8GP-06 9 70177757 70177757 C T FOXD4L5 Missense_Mutation p.G76D 0.39 tolerated(0.09) probably_damaging(0.992) TCGA-D3-A8GP-06 9 84199025 84199025 T C TLE1 3'UTR 0.93 TCGA-D3-A8GP-06 9 88162064 88162064 A T AGTPBP1 Missense_Mutation p.V1174E 0.98 tolerated_low_confidence(0.65) benign(0.029) TCGA-D3-A8GP-06 X 107430455 107430455 C T COL4A6 Missense_Mutation p.E609K 0.97 benign(0.361) TCGA-D3-A8GP-06 X 130415865 130415865 C T IGSF1 Missense_Mutation p.G434R 0.92 deleterious(0.03) benign(0.046) TCGA-D3-A8GP-06 X 13337594 13337594 G A ATXN3L Nonsense_Mutation p.R154* 0.96 TCGA-D3-A8GP-06 X 133627578 133627578 C T HPRT1 Missense_Mutation p.S148F 0.98 deleterious(0.01) benign(0.05) TCGA-D3-A8GP-06 X 151896328 151896328 C T MAGEA12 3'Flank 0.96 TCGA-D3-A8GP-06 X 151900189 151900189 G A MAGEA12 Silent p.I204I 0.97 TCGA-D3-A8GP-06 X 153070568 153070568 G A PDZD4 Missense_Mutation p.S249L 0.96 tolerated(0.3) benign(0.016) TCGA-D3-A8GP-06 X 153717069 153717069 C G SLC10A3 Missense_Mutation p.G71R 0.96 tolerated(0.15) probably_damaging(0.913) TCGA-D3-A8GP-06 X 208316 208316 C T PLCXD1 Missense_Mutation p.R182C 0.52 deleterious(0) probably_damaging(0.93) TCGA-D3-A8GP-06 X 30261261 30261261 G A MAGEB4 Missense_Mutation p.A337T 1.00 tolerated(0.05) unknown(0) TCGA-D3-A8GP-06 X 37665655 37665655 C T CYBB Silent p.L444L 0.97 TCGA-D3-A8GP-06 X 54275480 54275480 G A WNK3 Missense_Mutation p.P1101S 0.97 deleterious(0) probably_damaging(1) TCGA-D3-A8GP-06 X 5811203 5811203 C T NLGN4X Silent p.K702K 0.98 TCGA-D3-A8GP-06 X 67751900 67751918 ACCATGGAGCTTTGTCTCT - YIPF6 3'UTR 0.94 TCGA-D3-A8GP-06 X 73062353 73062353 C T XIST RNA 0.94 TCGA-D3-A8GP-06 Y 15024901 15024901 G A DDX3Y Missense_Mutation p.G155E 0.95 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GP-06 Y 15816205 15816205 C T TMSB4Y 5'UTR 0.86 TCGA-D3-A8GP-06 Y 24050337 24050337 G A RBMY1E Silent p.T399T 0.47 TCGA-D3-A8GP-06 Y 24050338 24050338 G A RBMY1E Missense_Mutation p.T399I 0.47 tolerated(0.09) possibly_damaging(0.757) TCGA-D3-A8GQ-06 10 102250035 102250035 G A SEC31B Missense_Mutation p.P899S 0.27 tolerated(0.12) benign(0.009) TCGA-D3-A8GQ-06 10 102738090 102738090 G A SEMA4G Silent p.E158E 0.32 TCGA-D3-A8GQ-06 10 102738091 102738091 G A SEMA4G Missense_Mutation p.G159R 0.38 deleterious(0) possibly_damaging(0.885) TCGA-D3-A8GQ-06 10 105830235 105830235 G A COL17A1 Missense_Mutation p.P186S 0.29 unknown(0) TCGA-D3-A8GQ-06 10 107012650 107012650 G A SORCS3 Missense_Mutation p.G1075R 0.33 tolerated(0.4) benign(0.171) TCGA-D3-A8GQ-06 10 1139412 1139412 C T WDR37 Missense_Mutation p.P209S 0.21 deleterious(0) benign(0.378) TCGA-D3-A8GQ-06 10 121541153 121541153 C T INPP5F Missense_Mutation p.P62L 0.41 deleterious(0.02) possibly_damaging(0.751) TCGA-D3-A8GQ-06 10 124089037 124089037 G A BTBD16 Silent p.R318R 0.29 TCGA-D3-A8GQ-06 10 124339145 124339145 G A DMBT1 Missense_Mutation p.R244Q 0.30 tolerated(1) benign(0.014) TCGA-D3-A8GQ-06 10 124380654 124380654 C T DMBT1 Missense_Mutation p.S1660F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GQ-06 10 124390773 124390773 G A DMBT1 Missense_Mutation p.E1979K 0.32 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A8GQ-06 10 124457470 124457470 G A C10orf120 Missense_Mutation p.R263C 0.30 tolerated(0.16) benign(0.007) TCGA-D3-A8GQ-06 10 124594564 124594564 G A CUZD1 Missense_Mutation p.S347F 0.28 deleterious(0.02) benign(0.202) TCGA-D3-A8GQ-06 10 125539742 125539742 C T CPXM2 Missense_Mutation p.E307K 0.27 deleterious(0.01) possibly_damaging(0.833) TCGA-D3-A8GQ-06 10 126692019 126692019 G A CTBP2 Missense_Mutation p.P574L 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 10 12867809 12867809 C T CAMK1D Intron 0.37 TCGA-D3-A8GQ-06 10 129690951 129690951 C T CLRN3 Nonsense_Mutation p.W33* 0.31 TCGA-D3-A8GQ-06 10 129906423 129906423 A G MKI67 Silent p.F1227F 0.36 TCGA-D3-A8GQ-06 10 13040513 13040513 C T CCDC3 Splice_Site p.X125_splice 0.34 TCGA-D3-A8GQ-06 10 13214638 13214638 C T MCM10 Silent p.P156P 0.29 TCGA-D3-A8GQ-06 10 132915137 132915137 C T TCERG1L Silent p.R440R 0.21 TCGA-D3-A8GQ-06 10 134671142 134671142 C T TTC40 Silent p.E1842E 0.25 TCGA-D3-A8GQ-06 10 135013925 135013925 C A KNDC1 Missense_Mutation p.R984S 0.33 tolerated(0.76) benign(0.004) TCGA-D3-A8GQ-06 10 135106082 135106082 G T TUBGCP2 Missense_Mutation p.L407I 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 10 14950319 14950319 A T DCLRE1C 3'UTR 0.33 TCGA-D3-A8GQ-06 10 14950321 14950321 G A DCLRE1C 3'UTR 0.31 TCGA-D3-A8GQ-06 10 15590460 15590460 G A ITGA8 Silent p.F958F 0.22 TCGA-D3-A8GQ-06 10 15760843 15760843 C T ITGA8 Missense_Mutation p.E89K 0.30 deleterious(0) possibly_damaging(0.844) TCGA-D3-A8GQ-06 10 18828582 18828582 G A CACNB2 Missense_Mutation p.D638N 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.455) TCGA-D3-A8GQ-06 10 20290848 20290848 C T PLXDC2 Missense_Mutation p.S86F 0.23 tolerated(0.15) benign(0.429) TCGA-D3-A8GQ-06 10 20335829 20335829 G A PLXDC2 Missense_Mutation p.R119Q 0.27 tolerated(0.08) possibly_damaging(0.73) TCGA-D3-A8GQ-06 10 20432300 20432300 C T PLXDC2 Silent p.F206F 0.38 TCGA-D3-A8GQ-06 10 21435389 21435389 C T C10orf113 Missense_Mutation p.E17K 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-D3-A8GQ-06 10 24762828 24762828 G A KIAA1217 Silent p.P506P 0.33 TCGA-D3-A8GQ-06 10 24820830 24820830 C T KIAA1217 Missense_Mutation p.P1052S 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GQ-06 10 24909176 24909176 G A ARHGAP21 Missense_Mutation p.H550Y 0.27 tolerated(0.26) probably_damaging(0.936) TCGA-D3-A8GQ-06 10 27057782 27057782 T A ABI1 Missense_Mutation p.S240C 0.32 tolerated(0.06) possibly_damaging(0.827) TCGA-D3-A8GQ-06 10 27702859 27702859 G A PTCHD3 Silent p.I107I 0.29 TCGA-D3-A8GQ-06 10 27964088 27964088 C T MKX 3'UTR 0.36 TCGA-D3-A8GQ-06 10 30740650 30740650 C T MAP3K8 Missense_Mutation p.P284S 0.42 tolerated(0.1) benign(0.1) TCGA-D3-A8GQ-06 10 32760064 32760064 G A CCDC7 Missense_Mutation p.E195K 0.34 tolerated(0.17) benign(0.001) TCGA-D3-A8GQ-06 10 34759112 34759112 G A PARD3 Silent p.S161S 0.36 TCGA-D3-A8GQ-06 10 37506705 37506705 G A ANKRD30A Missense_Mutation p.E1000K 0.26 tolerated(0.28) benign(0.001) TCGA-D3-A8GQ-06 10 37508603 37508603 G A ANKRD30A Silent p.Q1265Q 0.33 TCGA-D3-A8GQ-06 10 38680974 38680974 C T SEPT7P9 RNA 0.11 TCGA-D3-A8GQ-06 10 45473085 45473085 G A C10orf10 Missense_Mutation p.L132F 0.22 tolerated(0.66) benign(0.092) TCGA-D3-A8GQ-06 10 45799724 45799724 G A OR13A1 Silent p.F49F 0.19 TCGA-D3-A8GQ-06 10 49395233 49395233 A T FRMPD2 Splice_Site p.X756_splice 0.27 TCGA-D3-A8GQ-06 10 50122272 50122272 G A LRRC18 5'UTR 0.36 TCGA-D3-A8GQ-06 10 50531928 50531928 C T C10orf71 Silent p.L446L 0.35 TCGA-D3-A8GQ-06 10 50532550 50532550 C T C10orf71 Missense_Mutation p.P654S 0.24 tolerated(1) benign(0.009) TCGA-D3-A8GQ-06 10 50958925 50958925 C T OGDHL Missense_Mutation p.E286K 0.29 tolerated(0.11) benign(0.086) TCGA-D3-A8GQ-06 10 50960766 50960766 G A OGDHL Silent p.A132A 0.30 TCGA-D3-A8GQ-06 10 51472602 51472602 G A AGAP7 Silent p.F126F 0.31 TCGA-D3-A8GQ-06 10 52103535 52103535 C T SGMS1 Missense_Mutation p.E114K 0.29 tolerated(0.22) benign(0.269) TCGA-D3-A8GQ-06 10 54527807 54527807 G A MBL2 3'UTR 0.28 TCGA-D3-A8GQ-06 10 61443922 61443922 G A SLC16A9 Missense_Mutation p.A43V 0.29 tolerated(0.73) benign(0.005) TCGA-D3-A8GQ-06 10 61834915 61834915 C T ANK3 Missense_Mutation p.M1908I 0.22 possibly_damaging(0.775) TCGA-D3-A8GQ-06 10 61932885 61932885 G A ANK3 Silent p.F748F 0.26 TCGA-D3-A8GQ-06 10 62149335 62149335 C T ANK3 5'UTR 0.28 TCGA-D3-A8GQ-06 10 70451051 70451051 C T TET1 Missense_Mutation p.S1964F 0.34 tolerated(0.06) probably_damaging(0.935) TCGA-D3-A8GQ-06 10 71154787 71154787 C T HK1 Silent p.L771L 0.28 TCGA-D3-A8GQ-06 10 71682476 71682476 G A COL13A1 Missense_Mutation p.D375N 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-D3-A8GQ-06 10 73553349 73553349 C T CDH23 5'Flank 0.20 TCGA-D3-A8GQ-06 10 7611716 7611716 G A ITIH5 Silent p.F688F 0.25 TCGA-D3-A8GQ-06 10 76789081 76789081 C T KAT6B Missense_Mutation p.P1500L 0.47 benign(0.008) TCGA-D3-A8GQ-06 10 76867911 76867911 T C DUSP13 Intron 0.26 TCGA-D3-A8GQ-06 10 7822098 7822098 G A KIN Silent p.I99I 0.29 TCGA-D3-A8GQ-06 10 81317181 81317181 G A SFTPA2 Silent p.F177F 0.20 TCGA-D3-A8GQ-06 10 88730294 88730294 T A ADIRF Silent p.S62S 0.25 TCGA-D3-A8GQ-06 10 90332737 90332737 G A RNLS Missense_Mutation p.S150F 0.35 deleterious(0.02) possibly_damaging(0.552) TCGA-D3-A8GQ-06 10 90366539 90366539 G A LIPJ Missense_Mutation p.E326K 0.26 tolerated(0.72) benign(0.011) TCGA-D3-A8GQ-06 10 91178487 91178487 C T IFIT5 3'UTR 0.18 TCGA-D3-A8GQ-06 10 95372380 95372380 C T PDE6C 5'UTR 0.19 TCGA-D3-A8GQ-06 10 96484279 96484279 C T CYP2C18 Missense_Mutation p.L380F 0.30 tolerated(0.54) benign(0.004) TCGA-D3-A8GQ-06 10 96541718 96541718 G A CYP2C19 Silent p.R261R 0.27 TCGA-D3-A8GQ-06 10 96708900 96708900 C T CYP2C9 Silent p.F226F 0.18 TCGA-D3-A8GQ-06 10 96731894 96731894 G A CYP2C9 Missense_Mutation p.E285K 0.28 tolerated(0.15) benign(0.181) TCGA-D3-A8GQ-06 10 96827041 96827041 C T CYP2C8 Silent p.G135G 0.24 TCGA-D3-A8GQ-06 11 102593395 102593395 C T MMP8 Missense_Mutation p.E38K 0.29 tolerated(0.17) possibly_damaging(0.622) TCGA-D3-A8GQ-06 11 102736612 102736612 C T MMP12 RNA 0.18 TCGA-D3-A8GQ-06 11 103006610 103006610 T C DYNC2H1 Missense_Mutation p.F836S 0.13 possibly_damaging(0.888) TCGA-D3-A8GQ-06 11 103814310 103814310 A G PDGFD Silent p.I214I 0.15 TCGA-D3-A8GQ-06 11 103908059 103908059 C T DDI1 Missense_Mutation p.A170V 0.19 tolerated(0.06) possibly_damaging(0.742) TCGA-D3-A8GQ-06 11 10508834 10508834 C T AMPD3 Missense_Mutation p.H297Y 0.40 tolerated(0.14) probably_damaging(0.998) TCGA-D3-A8GQ-06 11 106810545 106810545 G A GUCY1A2 Missense_Mutation p.P283S 0.27 tolerated(0.31) benign(0.007) TCGA-D3-A8GQ-06 11 107535801 107535801 G A ELMOD1 Missense_Mutation p.D295N 0.38 tolerated(0.43) probably_damaging(1) TCGA-D3-A8GQ-06 11 108186808 108186808 C T ATM Missense_Mutation p.P2056S 0.29 tolerated(0.88) benign(0.001) TCGA-D3-A8GQ-06 11 108385200 108385200 G A EXPH5 Missense_Mutation p.P345L 0.56 tolerated(0.08) benign(0.121) TCGA-D3-A8GQ-06 11 111154933 111154934 CC T C11orf53 Frame_Shift_Del p.S47Lfs*27 0.25 TCGA-D3-A8GQ-06 11 113661475 113661475 G A ATF4P4 RNA 0.46 TCGA-D3-A8GQ-06 11 113661476 113661476 A T ATF4P4 RNA 0.45 TCGA-D3-A8GQ-06 11 115099906 115099906 G A CADM1 Silent p.V216V 0.40 TCGA-D3-A8GQ-06 11 121416074 121416074 G A SORL1 Missense_Mutation p.G663R 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 121478880 121478880 G A SORL1 Missense_Mutation p.G1745E 0.59 deleterious(0.04) possibly_damaging(0.874) TCGA-D3-A8GQ-06 11 121483450 121483450 T C SORL1 Silent p.N1776N 0.26 TCGA-D3-A8GQ-06 11 12284042 12284042 C T MICAL2 Missense_Mutation p.P1117L 0.33 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-D3-A8GQ-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.44 deleterious(0) benign(0.398) TCGA-D3-A8GQ-06 11 123893986 123893986 G A OR10G9 Silent p.R89R 0.27 TCGA-D3-A8GQ-06 11 123894375 123894375 C T OR10G9 Missense_Mutation p.S219F 0.49 tolerated(0.7) benign(0.247) TCGA-D3-A8GQ-06 11 123909442 123909442 C T OR10G7 Silent p.R89R 0.17 TCGA-D3-A8GQ-06 11 124189175 124189175 C T OR8D2 Missense_Mutation p.G307R 0.53 tolerated(1) benign(0.002) TCGA-D3-A8GQ-06 11 124440389 124440389 C T OR8A1 Missense_Mutation p.A142V 0.53 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 18159520 18159520 C T MRGPRX3 Silent p.S257S 0.29 TCGA-D3-A8GQ-06 11 20385655 20385655 C T HTATIP2 Intron 0.33 TCGA-D3-A8GQ-06 11 26743424 26743424 A G SLC5A12 5'UTR 0.27 TCGA-D3-A8GQ-06 11 27016792 27016792 C T FIBIN 3'UTR 0.37 TCGA-D3-A8GQ-06 11 30928195 30928195 C T DCDC1 Silent p.E1332E 0.37 TCGA-D3-A8GQ-06 11 32953471 32953471 A G QSER1 Missense_Mutation p.S94G 0.38 deleterious(0) benign(0.063) TCGA-D3-A8GQ-06 11 34493105 34493105 C T CAT 3'UTR 0.35 TCGA-D3-A8GQ-06 11 36484071 36484071 G A PRR5L Missense_Mutation p.D298N 0.30 tolerated(0.33) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 36614102 36614102 C T RAG2 3'UTR 0.28 TCGA-D3-A8GQ-06 11 3744394 3744394 G A NUP98 Silent p.H713H 0.36 TCGA-D3-A8GQ-06 11 45955588 45955588 G A PHF21A Silent p.S658S 0.31 TCGA-D3-A8GQ-06 11 46396583 46396583 C T DGKZ Silent p.T754T 0.58 TCGA-D3-A8GQ-06 11 47236687 47236687 G C DDB2 5'UTR 0.27 TCGA-D3-A8GQ-06 11 47260350 47260350 G A DDB2 Splice_Site p.X412_splice 0.29 TCGA-D3-A8GQ-06 11 47377087 47377087 C T SPI1 Silent p.K169K 0.22 TCGA-D3-A8GQ-06 11 47470545 47470545 G A RAPSN 5'UTR 0.27 TCGA-D3-A8GQ-06 11 4790416 4790416 G A OR51F1 Silent p.V244V 0.32 TCGA-D3-A8GQ-06 11 48238586 48238586 C T OR4B1 Silent p.I75I 0.33 TCGA-D3-A8GQ-06 11 4968009 4968009 C T OR51A4 Missense_Mutation p.G108R 0.15 tolerated(0.25) benign(0.141) TCGA-D3-A8GQ-06 11 49974046 49974046 C T OR4C13 Silent p.I24I 0.32 TCGA-D3-A8GQ-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.22 TCGA-D3-A8GQ-06 11 51515683 51515683 G A OR4C46 Missense_Mutation p.M134I 0.30 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-D3-A8GQ-06 11 5153163 5153163 C T OR52A5 Missense_Mutation p.R237Q 0.29 deleterious(0.03) benign(0.382) TCGA-D3-A8GQ-06 11 5172844 5172844 G A OR52A1 Silent p.L252L 0.31 TCGA-D3-A8GQ-06 11 5410760 5410760 C T OR51M1 Silent p.F44F 0.27 TCGA-D3-A8GQ-06 11 5411562 5411562 C T OR51M1 Missense_Mutation p.H312Y 0.20 deleterious(0) benign(0.001) TCGA-D3-A8GQ-06 11 55062991 55062991 C T TRIM51HP RNA 0.30 TCGA-D3-A8GQ-06 11 5529066 5529066 G A UBQLN3 Missense_Mutation p.P575S 0.32 tolerated(0.18) benign(0.035) TCGA-D3-A8GQ-06 11 5529665 5529665 G A UBQLN3 Missense_Mutation p.P375L 0.26 tolerated(0.17) benign(0.003) TCGA-D3-A8GQ-06 11 55340184 55340184 A G OR4C16 Missense_Mutation p.N194S 0.24 deleterious(0.04) possibly_damaging(0.536) TCGA-D3-A8GQ-06 11 55340293 55340293 G A OR4C16 Silent p.V230V 0.32 TCGA-D3-A8GQ-06 11 55658684 55658684 G A TRIM51 Missense_Mutation p.G312E 0.29 tolerated(0.28) benign(0.159) TCGA-D3-A8GQ-06 11 55658723 55658723 C T TRIM51 Missense_Mutation p.S325F 0.31 tolerated(0.08) benign(0.287) TCGA-D3-A8GQ-06 11 55889920 55889920 C T OR8H3 Silent p.V24V 0.30 TCGA-D3-A8GQ-06 11 55904478 55904478 G A OR8J3 Silent p.S239S 0.34 TCGA-D3-A8GQ-06 11 55944133 55944133 C T OR5J2 Missense_Mutation p.L14F 0.26 tolerated(0.13) benign(0.32) TCGA-D3-A8GQ-06 11 55944216 55944216 G A OR5J2 Silent p.R41R 0.25 TCGA-D3-A8GQ-06 11 56020546 56020546 A G OR5T3 Missense_Mutation p.R291G 0.30 deleterious(0.01) benign(0.443) TCGA-D3-A8GQ-06 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.29 deleterious(0.02) benign(0.181) TCGA-D3-A8GQ-06 11 56085881 56085881 G A OR8K3 Missense_Mutation p.M33I 0.21 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GQ-06 11 56143668 56143668 C T OR8U1 Missense_Mutation p.S190L 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 57004547 57004547 C T APLNR 5'UTR 0.30 TCGA-D3-A8GQ-06 11 57427046 57427046 T C CLP1 Missense_Mutation p.V33A 0.28 tolerated(0.14) benign(0.018) TCGA-D3-A8GQ-06 11 57505422 57505422 T C TMX2 Silent p.F96F 0.33 TCGA-D3-A8GQ-06 11 5758633 5758633 A G OR56B1 Missense_Mutation p.N296S 0.28 deleterious(0.01) benign(0.356) TCGA-D3-A8GQ-06 11 58034412 58034412 C T OR10W1 3'UTR 0.23 TCGA-D3-A8GQ-06 11 5841694 5841694 G A OR52N2 Silent p.G43G 0.30 TCGA-D3-A8GQ-06 11 58477258 58477258 C T GLYAT Nonsense_Mutation p.W291* 0.24 TCGA-D3-A8GQ-06 11 5862473 5862473 G A OR52E6 Missense_Mutation p.H219Y 0.31 tolerated(1) benign(0) TCGA-D3-A8GQ-06 11 5863086 5863086 G A OR52E6 Silent p.F14F 0.32 TCGA-D3-A8GQ-06 11 58978355 58978355 C T MPEG1 Missense_Mutation p.V662M 0.24 tolerated(0.06) benign(0.073) TCGA-D3-A8GQ-06 11 5905980 5905980 G A OR52E4 Missense_Mutation p.R153K 0.26 tolerated(0.07) benign(0.06) TCGA-D3-A8GQ-06 11 59861528 59861528 G A MS4A2 Missense_Mutation p.G210E 0.33 tolerated(1) benign(0.017) TCGA-D3-A8GQ-06 11 60152638 60152638 C T MS4A7 Silent p.F75F 0.30 TCGA-D3-A8GQ-06 11 60198382 60198382 C T MS4A5 Silent p.F89F 0.26 TCGA-D3-A8GQ-06 11 60198384 60198384 G A MS4A5 Nonsense_Mutation p.W90* 0.25 TCGA-D3-A8GQ-06 11 6048652 6048652 C T OR56A1 Missense_Mutation p.D95N 0.23 tolerated(0.48) benign(0.149) TCGA-D3-A8GQ-06 11 60638572 60638572 C T ZP1 Silent p.F323F 0.36 TCGA-D3-A8GQ-06 11 60666046 60666046 G A PRPF19 Silent p.T369T 0.43 TCGA-D3-A8GQ-06 11 64056834 64056834 C T GPR137 Silent p.P475P 0.29 TCGA-D3-A8GQ-06 11 64138849 64138849 C T RPS6KA4 Missense_Mutation p.T739I 0.39 tolerated(0.17) benign(0.01) TCGA-D3-A8GQ-06 11 64138850 64138850 C T RPS6KA4 Silent p.T739T 0.39 TCGA-D3-A8GQ-06 11 64390411 64390411 G A NRXN2 Silent p.P1329P 0.21 TCGA-D3-A8GQ-06 11 65384973 65384973 C T PCNXL3 Silent p.P158P 0.22 TCGA-D3-A8GQ-06 11 66102892 66102892 G T RIN1 Missense_Mutation p.S178Y 0.27 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GQ-06 11 67263741 67263741 G A PITPNM1 Missense_Mutation p.P742L 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 67263742 67263742 G A PITPNM1 Missense_Mutation p.P742S 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 11 67267273 67267273 G T PITPNM1 Missense_Mutation p.F364L 0.18 tolerated(0.2) benign(0.164) TCGA-D3-A8GQ-06 11 67431935 67431935 C T ALDH3B2 Missense_Mutation p.E269K 0.29 deleterious(0.01) possibly_damaging(0.619) TCGA-D3-A8GQ-06 11 68029230 68029230 G A C11orf24 Silent p.T411T 0.38 TCGA-D3-A8GQ-06 11 6891132 6891132 C T OR10A2 Silent p.F49F 0.23 TCGA-D3-A8GQ-06 11 6898509 6898509 C T OR10A4 Missense_Mutation p.P211S 0.26 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GQ-06 11 7021872 7021872 G A ZNF214 Missense_Mutation p.H348Y 0.31 deleterious(0) possibly_damaging(0.469) TCGA-D3-A8GQ-06 11 70260697 70260697 A C CTTN Missense_Mutation p.Q114P 0.20 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 11 7064118 7064118 C T NLRP14 Silent p.F287F 0.30 TCGA-D3-A8GQ-06 11 71146727 71146727 C T DHCR7 Silent p.K374K 0.41 TCGA-D3-A8GQ-06 11 71946777 71946777 C T INPPL1 Silent p.S906S 0.30 TCGA-D3-A8GQ-06 11 71948750 71948750 C T INPPL1 Silent p.P1154P 0.21 TCGA-D3-A8GQ-06 11 74009327 74009327 C T P4HA3 Missense_Mutation p.G216E 0.37 tolerated(0.11) benign(0.168) TCGA-D3-A8GQ-06 11 74414480 74414480 G A CHRDL2 Silent p.F272F 0.24 TCGA-D3-A8GQ-06 11 76795953 76795953 C T CAPN5 Silent p.P7P 0.37 TCGA-D3-A8GQ-06 11 76924997 76924997 G A MYO7A Silent p.G2177G 0.30 TCGA-D3-A8GQ-06 11 77775216 77775216 G A THRSP Missense_Mutation p.E97K 0.29 tolerated(0.34) benign(0.025) TCGA-D3-A8GQ-06 11 7960223 7960223 G A OR10A3 Missense_Mutation p.T282I 0.38 tolerated(0.09) benign(0.25) TCGA-D3-A8GQ-06 11 7981857 7981857 C T NLRP10 Silent p.R434R 0.41 TCGA-D3-A8GQ-06 11 7982681 7982681 C T NLRP10 Missense_Mutation p.E160K 0.37 tolerated(0.2) benign(0.367) TCGA-D3-A8GQ-06 11 8704256 8704256 G A RPL27A 5'UTR 0.29 TCGA-D3-A8GQ-06 11 89135573 89135573 G A NOX4 Missense_Mutation p.S256L 0.26 tolerated(0.36) benign(0.002) TCGA-D3-A8GQ-06 11 89531421 89531421 G A TRIM49 Silent p.F412F 0.24 TCGA-D3-A8GQ-06 11 89774733 89774733 G A TRIM49C 3'UTR 0.15 TCGA-D3-A8GQ-06 11 92577674 92577674 A G FAT3 Missense_Mutation p.K3714R 0.13 possibly_damaging(0.87) TCGA-D3-A8GQ-06 11 92616378 92616378 C T FAT3 Silent p.I4252I 0.31 TCGA-D3-A8GQ-06 11 94113199 94113199 C T GPR83 3'UTR 0.25 TCGA-D3-A8GQ-06 12 100904726 100904726 G A NR1H4 Missense_Mutation p.G94R 0.35 deleterious(0.01) possibly_damaging(0.873) TCGA-D3-A8GQ-06 12 101477569 101477569 C T ANO4 Silent p.I468I 0.30 TCGA-D3-A8GQ-06 12 102315169 102315169 C T DRAM1 3'UTR 0.35 TCGA-D3-A8GQ-06 12 104084246 104084246 C T STAB2 Missense_Mutation p.T1076I 0.35 tolerated(0.12) benign(0.004) TCGA-D3-A8GQ-06 12 104390520 104390520 C G GLT8D2 Missense_Mutation p.G198A 0.26 tolerated(0.09) probably_damaging(1) TCGA-D3-A8GQ-06 12 105150982 105150982 G A CHST11 Missense_Mutation p.E154K 0.34 deleterious(0.04) possibly_damaging(0.487) TCGA-D3-A8GQ-06 12 10603752 10603752 C T KLRC1 Missense_Mutation p.D2N 0.23 tolerated(1) benign(0.005) TCGA-D3-A8GQ-06 12 108013876 108013876 G A BTBD11 Missense_Mutation p.E856K 0.21 tolerated(0.1) probably_damaging(0.993) TCGA-D3-A8GQ-06 12 108034093 108034093 C T BTBD11 Missense_Mutation p.H915Y 0.26 deleterious(0.04) probably_damaging(0.92) TCGA-D3-A8GQ-06 12 109292492 109292492 G A DAO Missense_Mutation p.G245R 0.24 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GQ-06 12 109577517 109577517 C T ACACB Missense_Mutation p.P103S 0.23 deleterious_low_confidence(0.05) benign(0.004) TCGA-D3-A8GQ-06 12 10962528 10962528 G A TAS2R9 Silent p.I49I 0.29 TCGA-D3-A8GQ-06 12 109665236 109665236 C T ACACB Missense_Mutation p.P1315S 0.31 tolerated(1) benign(0.004) TCGA-D3-A8GQ-06 12 110812076 110812076 G A ANAPC7 Missense_Mutation p.P558L 0.24 tolerated(0.65) possibly_damaging(0.715) TCGA-D3-A8GQ-06 12 110944459 110944459 G A RAD9B Missense_Mutation p.D117N 0.33 tolerated(0.79) possibly_damaging(0.904) TCGA-D3-A8GQ-06 12 111733158 111733158 C T CUX2 Silent p.I194I 0.36 TCGA-D3-A8GQ-06 12 113532642 113532642 G A DTX1 Missense_Mutation p.G426S 0.26 tolerated(0.07) probably_damaging(0.983) TCGA-D3-A8GQ-06 12 11420926 11420926 C T PRB3 Missense_Mutation p.G86E 0.22 deleterious(0) unknown(0) TCGA-D3-A8GQ-06 12 117701721 117701721 C T NOS1 Missense_Mutation p.R732Q 0.31 deleterious(0.01) benign(0.439) TCGA-D3-A8GQ-06 12 117768947 117768947 G A NOS1 5'Flank 0.37 TCGA-D3-A8GQ-06 12 117963021 117963021 C T KSR2 Missense_Mutation p.E619K 0.35 tolerated(0.35) probably_damaging(0.926) TCGA-D3-A8GQ-06 12 121426717 121426717 C T HNF1A Silent p.T136T 0.29 TCGA-D3-A8GQ-06 12 121431435 121431435 C T HNF1A Silent p.I213I 0.30 TCGA-D3-A8GQ-06 12 123262070 123262070 C T CCDC62 Silent p.I23I 0.23 TCGA-D3-A8GQ-06 12 130912845 130912845 C T RIMBP2 Missense_Mutation p.S747N 0.30 tolerated(0.15) probably_damaging(0.999) TCGA-D3-A8GQ-06 12 130919306 130919306 G A RIMBP2 Silent p.F725F 0.29 TCGA-D3-A8GQ-06 12 132400694 132400694 C T ULK1 Missense_Mutation p.S623F 0.44 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 12 132681685 132681685 C T GALNT9 Missense_Mutation p.M227I 0.29 tolerated(0.08) benign(0) TCGA-D3-A8GQ-06 12 13715825 13715825 C T GRIN2B Silent p.G1449G 0.27 TCGA-D3-A8GQ-06 12 14834368 14834368 C T GUCY2C Missense_Mutation p.E219K 0.38 tolerated(0.85) benign(0.001) TCGA-D3-A8GQ-06 12 15261950 15261950 C T RERG 3'UTR 0.32 TCGA-D3-A8GQ-06 12 15262420 15262420 C T RERG Missense_Mutation p.R75Q 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GQ-06 12 15661666 15661666 G A PTPRO Missense_Mutation p.E477K 0.30 tolerated(0.58) benign(0.257) TCGA-D3-A8GQ-06 12 18641455 18641455 C T PIK3C2G Silent p.F818F 0.23 TCGA-D3-A8GQ-06 12 18747451 18747451 C T PIK3C2G Silent p.F1304F 0.47 TCGA-D3-A8GQ-06 12 1963172 1963172 C T CACNA2D4 Missense_Mutation p.V731M 0.14 tolerated(0.08) possibly_damaging(0.897) TCGA-D3-A8GQ-06 12 21028281 21028281 G A SLCO1B3 Silent p.P280P 0.30 TCGA-D3-A8GQ-06 12 21054322 21054322 G A SLCO1B3 Missense_Mutation p.D596N 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 12 21176179 21176179 C T SLCO1B7 Silent p.L182L 0.15 TCGA-D3-A8GQ-06 12 21471851 21471851 G A SLCO1A2 Silent p.L23L 0.22 TCGA-D3-A8GQ-06 12 22065981 22065981 G A ABCC9 Missense_Mutation p.P279L 0.39 deleterious(0.05) benign(0.015) TCGA-D3-A8GQ-06 12 40020071 40020071 G A C12orf40 5'UTR 0.40 TCGA-D3-A8GQ-06 12 43862502 43862502 G A ADAMTS20 Missense_Mutation p.S375L 0.42 deleterious(0) benign(0.137) TCGA-D3-A8GQ-06 12 43896194 43896194 C T ADAMTS20 Missense_Mutation p.E210K 0.29 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 12 4479897 4479897 C T FGF23 Missense_Mutation p.G123E 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-D3-A8GQ-06 12 45410279 45410279 C T DBX2 Silent p.L270L 0.22 TCGA-D3-A8GQ-06 12 4543546 4543546 T G FGF6 Missense_Mutation p.Q154H 0.31 tolerated(0.16) benign(0.004) TCGA-D3-A8GQ-06 12 46230679 46230679 C T ARID2 Missense_Mutation p.R310C 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 12 46245057 46245057 C T ARID2 Nonsense_Mutation p.Q1051* 0.37 TCGA-D3-A8GQ-06 12 46321506 46321506 T A SCAF11 Missense_Mutation p.I660F 0.32 deleterious(0.01) benign(0.169) TCGA-D3-A8GQ-06 12 47160553 47160553 G A SLC38A4 Silent p.F525F 0.22 TCGA-D3-A8GQ-06 12 48374337 48374337 C T COL2A1 Silent p.Q875Q 0.50 TCGA-D3-A8GQ-06 12 49723004 49723004 C T TROAP Missense_Mutation p.P361S 0.29 tolerated(0.14) benign(0.061) TCGA-D3-A8GQ-06 12 49724443 49724443 G A TROAP Silent p.Q605Q 0.27 TCGA-D3-A8GQ-06 12 5021016 5021016 G A KCNA1 Missense_Mutation p.E158K 0.36 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 12 52168059 52168059 C T SCN8A Silent p.I1244I 0.30 TCGA-D3-A8GQ-06 12 54799003 54799003 C T ITGA5 Missense_Mutation p.R391Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 12 54925080 54925080 G A NCKAP1L Missense_Mutation p.G848D 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 12 55356613 55356613 G A TESPA1 Missense_Mutation p.P357S 0.23 tolerated_low_confidence(1) benign(0.003) TCGA-D3-A8GQ-06 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.35 TCGA-D3-A8GQ-06 12 55863332 55863332 G A OR6C70 Silent p.A197A 0.22 TCGA-D3-A8GQ-06 12 5687533 5687533 G A ANO2 Silent p.I795I 0.25 TCGA-D3-A8GQ-06 12 57113180 57113180 G A NACA Intron 0.33 TCGA-D3-A8GQ-06 12 57396640 57396640 G A ZBTB39 Missense_Mutation p.P688S 0.29 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 12 57493137 57493137 G A STAT6 Nonsense_Mutation p.Q611* 0.32 TCGA-D3-A8GQ-06 12 57858992 57858992 G A GLI1 Missense_Mutation p.G163E 0.24 deleterious(0.05) possibly_damaging(0.493) TCGA-D3-A8GQ-06 12 57864490 57864490 G A GLI1 Missense_Mutation p.R656K 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-D3-A8GQ-06 12 58159136 58159136 C T CYP27B1 Missense_Mutation p.G178E 0.23 tolerated(0.1) possibly_damaging(0.653) TCGA-D3-A8GQ-06 12 64890975 64890975 C T TBK1 Missense_Mutation p.S632L 0.31 tolerated(0.32) benign(0.079) TCGA-D3-A8GQ-06 12 66152430 66152430 C T RPSAP52 RNA 0.27 TCGA-D3-A8GQ-06 12 66152464 66152464 C T RPSAP52 RNA 0.44 TCGA-D3-A8GQ-06 12 67703824 67703824 A T CAND1 Nonsense_Mutation p.K1057* 0.33 TCGA-D3-A8GQ-06 12 70048913 70048913 C T BEST3 Missense_Mutation p.G594E 0.32 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GQ-06 12 70091559 70091559 C T BEST3 Missense_Mutation p.S7N 0.33 tolerated(0.22) benign(0.173) TCGA-D3-A8GQ-06 12 71077934 71077934 C T PTPRR Missense_Mutation p.M490I 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 12 7302184 7302184 G A CLSTN3 Missense_Mutation p.G714R 0.33 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GQ-06 12 78392250 78392250 G A NAV3 Missense_Mutation p.E292K 0.26 tolerated(0.07) possibly_damaging(0.538) TCGA-D3-A8GQ-06 12 81110911 81110911 C T MYF5 Silent p.S23S 0.41 TCGA-D3-A8GQ-06 12 81624915 81624915 C T ACSS3 Missense_Mutation p.P532S 0.38 deleterious(0.01) benign(0.281) TCGA-D3-A8GQ-06 12 81719638 81719638 C T PPFIA2 Missense_Mutation p.E854K 0.35 deleterious(0.02) benign(0.197) TCGA-D3-A8GQ-06 12 81741352 81741352 C T PPFIA2 Missense_Mutation p.S731N 0.31 tolerated(0.09) possibly_damaging(0.654) TCGA-D3-A8GQ-06 12 81747054 81747054 G A PPFIA2 Missense_Mutation p.P613L 0.20 tolerated(0.21) benign(0.02) TCGA-D3-A8GQ-06 12 8211488 8211488 G A C3AR1 Missense_Mutation p.P432S 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 12 8211652 8211652 C T C3AR1 Missense_Mutation p.R377Q 0.25 tolerated(0.28) benign(0.14) TCGA-D3-A8GQ-06 12 83526116 83526116 G A TMTC2 Missense_Mutation p.R820H 0.06 tolerated(0.27) benign(0.003) TCGA-D3-A8GQ-06 12 91552217 91552217 C T DCN Missense_Mutation p.E132K 0.33 tolerated(0.42) benign(0.118) TCGA-D3-A8GQ-06 12 9333658 9333658 G A PZP Missense_Mutation p.P587L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 12 95660393 95660393 C T VEZT Missense_Mutation p.S232F 0.18 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 12 99548157 99548157 G A ANKS1B Silent p.V812V 0.31 TCGA-D3-A8GQ-06 13 101710319 101710319 C T NALCN Silent p.R1665R 0.31 TCGA-D3-A8GQ-06 13 103054031 103054031 G A FGF14 5'UTR 0.29 TCGA-D3-A8GQ-06 13 106124905 106124905 G A DAOA Missense_Mutation p.G51E 0.36 tolerated_low_confidence(0.06) probably_damaging(0.969) TCGA-D3-A8GQ-06 13 107863002 107863002 C T FAM155A Silent p.T339T 0.21 TCGA-D3-A8GQ-06 13 108881908 108881908 C T ABHD13 Silent p.S114S 0.20 TCGA-D3-A8GQ-06 13 108881909 108881909 C T ABHD13 Missense_Mutation p.P115S 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-D3-A8GQ-06 13 20077404 20077404 C T TPTE2 5'UTR 0.23 TCGA-D3-A8GQ-06 13 20242610 20242610 C T MPHOSPH8 Silent p.L756L 0.32 TCGA-D3-A8GQ-06 13 23909133 23909133 G A SACS Missense_Mutation p.S2961L 0.36 probably_damaging(0.984) TCGA-D3-A8GQ-06 13 25262540 25262540 C T ATP12A Silent p.I104I 0.28 TCGA-D3-A8GQ-06 13 27333200 27333200 G A GPR12 Silent p.I255I 0.31 TCGA-D3-A8GQ-06 13 27333876 27333876 G A GPR12 Missense_Mutation p.S30F 0.26 tolerated(0.25) benign(0.135) TCGA-D3-A8GQ-06 13 27333877 27333877 A T GPR12 Missense_Mutation p.S30T 0.27 tolerated(0.34) benign(0) TCGA-D3-A8GQ-06 13 28222588 28222588 T C POLR1D Silent p.G33G 0.42 TCGA-D3-A8GQ-06 13 28624326 28624326 C T FLT3 Silent p.K216K 0.20 TCGA-D3-A8GQ-06 13 28891632 28891632 C T FLT1 Intron 0.16 TCGA-D3-A8GQ-06 13 29005320 29005320 C T FLT1 Missense_Mutation p.R314K 0.28 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 13 29600365 29600365 G A MTUS2 Silent p.R520R 0.33 TCGA-D3-A8GQ-06 13 31897924 31897924 C T B3GALTL Silent p.L407L 0.33 TCGA-D3-A8GQ-06 13 32355858 32355858 C T RXFP2 Missense_Mutation p.S279L 0.24 deleterious(0.04) benign(0.009) TCGA-D3-A8GQ-06 13 32705857 32705857 G A FRY Silent p.R255R 0.27 TCGA-D3-A8GQ-06 13 32760504 32760504 C T FRY Missense_Mutation p.R1143C 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-D3-A8GQ-06 13 32812112 32812112 C A FRY Missense_Mutation p.S2136Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GQ-06 13 33638107 33638107 G A KL Missense_Mutation p.M941I 0.27 tolerated(0.63) benign(0.007) TCGA-D3-A8GQ-06 13 37269427 37269427 C T SERTM1 Missense_Mutation p.S71F 0.29 tolerated_low_confidence(0.09) benign(0.01) TCGA-D3-A8GQ-06 13 38357350 38357350 C T TRPC4 Missense_Mutation p.E41K 0.29 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GQ-06 13 39266191 39266191 C T FREM2 Silent p.F1570F 0.29 TCGA-D3-A8GQ-06 13 39542569 39542569 C T STOML3 Missense_Mutation p.E207K 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GQ-06 13 39587775 39587775 G A PROSER1 Silent p.F538F 0.34 TCGA-D3-A8GQ-06 13 42729492 42729492 C T DGKH Silent p.I150I 0.25 TCGA-D3-A8GQ-06 13 42876873 42876873 C T AKAP11 Silent p.L1331L 0.21 TCGA-D3-A8GQ-06 13 43180671 43180671 C T TNFSF11 Missense_Mutation p.R191W 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GQ-06 13 45911670 45911670 G A TPT1 Intron 0.32 TCGA-D3-A8GQ-06 13 51918556 51918556 C T SERPINE3 Missense_Mutation p.A142V 0.22 tolerated(0.25) benign(0.084) TCGA-D3-A8GQ-06 13 52548311 52548311 G A ATP7B Missense_Mutation p.P349S 0.33 tolerated(0.81) benign(0) TCGA-D3-A8GQ-06 13 53418792 53418792 C T PCDH8 Missense_Mutation p.G1039E 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A8GQ-06 13 53616106 53616106 G A OLFM4 Missense_Mutation p.R140Q 0.24 deleterious(0.02) benign(0.426) TCGA-D3-A8GQ-06 13 58208675 58208675 G A PCDH17 Silent p.V665V 0.34 TCGA-D3-A8GQ-06 13 76395318 76395318 C T LMO7 Missense_Mutation p.S505F 0.32 deleterious(0.02) benign(0.354) TCGA-D3-A8GQ-06 13 84454352 84454352 C T SLITRK1 Missense_Mutation p.D431N 0.39 tolerated(1) benign(0.012) TCGA-D3-A8GQ-06 13 84454353 84454353 C T SLITRK1 Missense_Mutation p.M430I 0.40 deleterious(0.03) benign(0.005) TCGA-D3-A8GQ-06 13 84455246 84455246 C T SLITRK1 Missense_Mutation p.E133K 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-D3-A8GQ-06 13 88329901 88329901 C T SLITRK5 Missense_Mutation p.P753L 0.23 deleterious(0.04) probably_damaging(0.988) TCGA-D3-A8GQ-06 13 93879737 93879737 C T GPC6 Missense_Mutation p.L10F 0.35 tolerated(0.4) benign(0.023) TCGA-D3-A8GQ-06 13 96242121 96242121 G A DZIP1 Missense_Mutation p.P637S 0.32 tolerated(0.44) benign(0.026) TCGA-D3-A8GQ-06 14 101495994 101495994 G A MIR494 RNA 0.39 TCGA-D3-A8GQ-06 14 102843154 102843154 C T TECPR2 Silent p.R32R 0.34 TCGA-D3-A8GQ-06 14 103416811 103416811 G A CDC42BPB Missense_Mutation p.H1101Y 0.28 tolerated(1) benign(0) TCGA-D3-A8GQ-06 14 105397194 105397194 G A PLD4 Nonsense_Mutation p.W278* 0.35 TCGA-D3-A8GQ-06 14 105609247 105609247 G A JAG2 Missense_Mutation p.P1168S 0.50 tolerated(0.49) probably_damaging(0.998) TCGA-D3-A8GQ-06 14 106845536 106845536 G A IGHV3-35 Silent p.F46F 0.33 TCGA-D3-A8GQ-06 14 107083460 107083460 G A IGHV4-59 Silent p.I48I 0.33 TCGA-D3-A8GQ-06 14 107199364 107199364 G A IGHV3-72 Missense_Mutation p.L10F 0.23 tolerated_low_confidence(0.06) benign(0.028) TCGA-D3-A8GQ-06 14 19559134 19559134 A C POTEG Missense_Mutation p.L260F 0.25 tolerated(0.06) probably_damaging(0.986) TCGA-D3-A8GQ-06 14 20404095 20404095 G A OR4K1 Silent p.K90K 0.35 TCGA-D3-A8GQ-06 14 20404411 20404411 G A OR4K1 Missense_Mutation p.E196K 0.31 deleterious(0.04) possibly_damaging(0.626) TCGA-D3-A8GQ-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.31 TCGA-D3-A8GQ-06 14 20483260 20483260 G A OR4K14 Silent p.F31F 0.40 TCGA-D3-A8GQ-06 14 20502760 20502760 G A OR4K13 Missense_Mutation p.S53L 0.45 tolerated(0.29) benign(0.02) TCGA-D3-A8GQ-06 14 21025104 21025104 T C RNASE9 Missense_Mutation p.E47G 0.42 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GQ-06 14 21991632 21991632 C T SALL2 Missense_Mutation p.G744R 0.38 tolerated(0.06) possibly_damaging(0.577) TCGA-D3-A8GQ-06 14 21991652 21991652 G A SALL2 Missense_Mutation p.S737F 0.35 tolerated(0.52) possibly_damaging(0.486) TCGA-D3-A8GQ-06 14 22102461 22102461 C T OR10G2 Missense_Mutation p.D180N 0.19 tolerated(0.06) benign(0.327) TCGA-D3-A8GQ-06 14 22294082 22294082 G A TRAV10 Silent p.G62G 0.35 TCGA-D3-A8GQ-06 14 22294158 22294158 G A TRAV10 Missense_Mutation p.D88N 0.32 tolerated(0.2) benign(0.051) TCGA-D3-A8GQ-06 14 22309729 22309729 G A TRAV12-1 Missense_Mutation p.G37E 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-D3-A8GQ-06 14 22363144 22363144 C T TRAV8-4 Missense_Mutation p.S92F 0.44 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GQ-06 14 22392274 22392274 A G TRAV14DV4 5'UTR 0.38 TCGA-D3-A8GQ-06 14 22564685 22564685 G A TRDV1 Missense_Mutation p.E46K 0.35 deleterious(0.04) benign(0.397) TCGA-D3-A8GQ-06 14 22636883 22636883 G A TRAV30 Silent p.E112E 0.28 TCGA-D3-A8GQ-06 14 23855649 23855649 C T MYH6 Missense_Mutation p.E1612K 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A8GQ-06 14 23887249 23887249 C T MYH7 Intron 0.29 TCGA-D3-A8GQ-06 14 24435168 24435168 C T DHRS4 Silent p.S169S 0.30 TCGA-D3-A8GQ-06 14 24551899 24551899 G A NRL Silent p.F53F 0.49 TCGA-D3-A8GQ-06 14 28733845 28733845 G A BNIP3P1 RNA 0.25 TCGA-D3-A8GQ-06 14 31535417 31535417 C T AP4S1 Silent p.F5F 0.32 TCGA-D3-A8GQ-06 14 31827888 31827888 G A HEATR5A Missense_Mutation p.S496F 0.31 deleterious(0) benign(0.058) TCGA-D3-A8GQ-06 14 33293255 33293255 A T AKAP6 Missense_Mutation p.N2079I 0.35 tolerated(0.2) benign(0.157) TCGA-D3-A8GQ-06 14 36841102 36841102 T C DPPA3P2 RNA 0.32 TCGA-D3-A8GQ-06 14 39716367 39716367 G A MIA2 Missense_Mutation p.E197K 0.23 tolerated(0.11) probably_damaging(0.933) TCGA-D3-A8GQ-06 14 50792538 50792538 C T ATP5S 3'UTR 0.50 TCGA-D3-A8GQ-06 14 55203888 55203888 C T SAMD4A Missense_Mutation p.H288Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 14 55424313 55424313 A G WDHD1 Silent p.F914F 0.35 TCGA-D3-A8GQ-06 14 55510784 55510784 T C SOCS4 Missense_Mutation p.F342S 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A8GQ-06 14 56130701 56130701 T G KTN1 Missense_Mutation p.M1040R 0.28 deleterious(0) possibly_damaging(0.894) TCGA-D3-A8GQ-06 14 58605189 58605189 G A C14orf37 Silent p.V296V 0.31 TCGA-D3-A8GQ-06 14 63468138 63468138 C T KCNH5 Missense_Mutation p.R115K 0.31 tolerated(0.52) probably_damaging(0.994) TCGA-D3-A8GQ-06 14 65230487 65230487 G A SPTB Intron 0.31 TCGA-D3-A8GQ-06 14 67646322 67646322 C T GPHN Missense_Mutation p.R703C 0.29 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 14 70714267 70714267 G A ADAM21P1 RNA 0.30 TCGA-D3-A8GQ-06 14 71216689 71216689 G A MAP3K9 Missense_Mutation p.P371S 0.19 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 14 74824028 74824028 C T VRTN Missense_Mutation p.S181F 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 14 75269295 75269295 C T YLPM1 Silent p.F1479F 0.31 TCGA-D3-A8GQ-06 14 77723035 77723035 G A TMEM63C Missense_Mutation p.G796E 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-D3-A8GQ-06 14 77894757 77894757 C T VIPAS39 Missense_Mutation p.G473R 0.33 deleterious(0.01) benign(0.217) TCGA-D3-A8GQ-06 14 77931966 77931966 C T AHSA1 Silent p.L216L 0.24 TCGA-D3-A8GQ-06 14 80971291 80971291 G A CEP128 Missense_Mutation p.R1049C 0.30 tolerated(0.22) benign(0.003) TCGA-D3-A8GQ-06 14 92087968 92087968 G A CATSPERB Silent p.V748V 0.23 TCGA-D3-A8GQ-06 14 92249334 92249334 C T TC2N 3'UTR 0.26 TCGA-D3-A8GQ-06 14 92280126 92280126 C T TC2N 5'UTR 0.33 TCGA-D3-A8GQ-06 14 94069636 94069636 G A UNC79 Nonsense_Mutation p.W1032* 0.26 TCGA-D3-A8GQ-06 14 94152953 94152953 C A UNC79 Nonsense_Mutation p.Y2147* 0.28 TCGA-D3-A8GQ-06 14 94464404 94464404 C T LINC00521 RNA 0.28 TCGA-D3-A8GQ-06 14 95081358 95081358 G A SERPINA3 Missense_Mutation p.D194N 0.35 tolerated(0.33) benign(0.321) TCGA-D3-A8GQ-06 14 96777947 96777947 G A ATG2B Missense_Mutation p.R1308C 0.34 tolerated(0.35) possibly_damaging(0.636) TCGA-D3-A8GQ-06 14 96864554 96864554 C T AK7 Missense_Mutation p.S83F 0.23 deleterious(0) benign(0.444) TCGA-D3-A8GQ-06 14 96944806 96944806 C T AK7 Silent p.F520F 0.23 TCGA-D3-A8GQ-06 15 101775374 101775374 G A CHSY1 Silent p.L243L 0.42 TCGA-D3-A8GQ-06 15 101906495 101906495 G A PCSK6 Silent p.F587F 0.13 TCGA-D3-A8GQ-06 15 102292822 102292822 G C DNM1P47 RNA 0.15 TCGA-D3-A8GQ-06 15 20874955 20874955 G A NBEAP1 RNA 0.12 TCGA-D3-A8GQ-06 15 20876573 20876573 G A NBEAP1 RNA 0.07 TCGA-D3-A8GQ-06 15 22382613 22382613 C T OR4N4 Silent p.F47F 0.10 TCGA-D3-A8GQ-06 15 23303802 23303802 T C HERC2P2 Intron 0.09 TCGA-D3-A8GQ-06 15 23411062 23411062 C T RP11-467N20.5 Missense_Mutation p.E104K 0.32 possibly_damaging(0.607) TCGA-D3-A8GQ-06 15 23889886 23889886 C T MAGEL2 Missense_Mutation p.G399R 0.29 tolerated(0.1) benign(0.041) TCGA-D3-A8GQ-06 15 24924307 24924307 C T NPAP1 Missense_Mutation p.S1098L 0.57 deleterious_low_confidence(0.04) benign(0.193) TCGA-D3-A8GQ-06 15 25419972 25419972 G A SNORD115-3 5'Flank 0.26 TCGA-D3-A8GQ-06 15 27193169 27193169 C T GABRA5 Missense_Mutation p.T393I 0.33 tolerated(0.27) benign(0.047) TCGA-D3-A8GQ-06 15 29397605 29397605 C T APBA2 Silent p.I516I 0.43 TCGA-D3-A8GQ-06 15 33795901 33795901 G A RYR3 Missense_Mutation p.E81K 0.52 probably_damaging(0.998) TCGA-D3-A8GQ-06 15 33831613 33831613 C T RYR3 Nonsense_Mutation p.R166* 0.36 TCGA-D3-A8GQ-06 15 34078002 34078002 C T RYR3 Silent p.P3136P 0.41 TCGA-D3-A8GQ-06 15 35274288 35274288 A T ZNF770 Missense_Mutation p.F450I 0.22 tolerated(0.23) benign(0.053) TCGA-D3-A8GQ-06 15 39881439 39881439 G A THBS1 Missense_Mutation p.G604R 0.20 tolerated(0.06) possibly_damaging(0.898) TCGA-D3-A8GQ-06 15 42282427 42282427 C T PLA2G4E Missense_Mutation p.E493K 0.44 tolerated(0.64) possibly_damaging(0.527) TCGA-D3-A8GQ-06 15 42299930 42299930 C T PLA2G4E Silent p.V130V 0.10 TCGA-D3-A8GQ-06 15 43533172 43533172 C T TGM5 Silent p.G293G 0.41 TCGA-D3-A8GQ-06 15 43814107 43814107 C T MAP1A Missense_Mutation p.P146S 0.27 probably_damaging(0.963) TCGA-D3-A8GQ-06 15 45047310 45047310 A T TRIM69 Silent p.A73A 0.22 TCGA-D3-A8GQ-06 15 49135774 49135774 G A SHC4 Missense_Mutation p.P439S 0.23 tolerated(0.42) benign(0) TCGA-D3-A8GQ-06 15 50171587 50171587 C T ATP8B4 Missense_Mutation p.G923R 0.47 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GQ-06 15 50519340 50519340 C T SLC27A2 Silent p.F474F 0.20 TCGA-D3-A8GQ-06 15 50592991 50592991 G A GABPB1 Missense_Mutation p.T243I 0.35 tolerated(0.18) benign(0.368) TCGA-D3-A8GQ-06 15 54557637 54557637 G A UNC13C Missense_Mutation p.R1254K 0.45 tolerated_low_confidence(1) benign(0.014) TCGA-D3-A8GQ-06 15 65350762 65350762 C T RASL12 Intron 0.26 TCGA-D3-A8GQ-06 15 71276582 71276582 C T LRRC49 Silent p.F390F 0.46 TCGA-D3-A8GQ-06 15 72050370 72050370 C T THSD4 Missense_Mutation p.P849S 0.29 tolerated(0.08) benign(0.342) TCGA-D3-A8GQ-06 15 74173995 74173995 C T TBC1D21 Missense_Mutation p.P60L 0.20 tolerated(0.2) possibly_damaging(0.46) TCGA-D3-A8GQ-06 15 74640303 74640303 G A CYP11A1 Silent p.F121F 0.26 TCGA-D3-A8GQ-06 15 75309018 75309018 C T SCAMP5 Missense_Mutation p.A74V 0.29 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GQ-06 15 75310786 75310786 C T SCAMP5 Silent p.F141F 0.44 TCGA-D3-A8GQ-06 15 77769936 77769936 C T HMG20A Missense_Mutation p.P219S 0.24 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GQ-06 15 78921816 78921816 G A CHRNB4 Silent p.F277F 0.14 TCGA-D3-A8GQ-06 15 85326874 85326874 C T ZNF592 Missense_Mutation p.P323L 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GQ-06 15 85431054 85431054 G A SLC28A1 Silent p.L21L 0.21 TCGA-D3-A8GQ-06 15 89400348 89400348 C T ACAN Missense_Mutation p.S1511L 0.22 deleterious(0.01) possibly_damaging(0.901) TCGA-D3-A8GQ-06 15 89415269 89415269 G C ACAN Missense_Mutation p.D2381H 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 15 89824417 89824417 C T FANCI Silent p.I466I 0.18 TCGA-D3-A8GQ-06 15 97328268 97328268 G A SPATA8 Missense_Mutation p.R80Q 0.29 deleterious_low_confidence(0) benign(0.417) TCGA-D3-A8GQ-06 16 10032163 10032163 C T GRIN2A Silent p.K220K 0.22 TCGA-D3-A8GQ-06 16 1250521 1250521 G A CACNA1H Missense_Mutation p.G357S 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 16 1270010 1270010 G A CACNA1H Silent p.G2026G 0.45 TCGA-D3-A8GQ-06 16 14355134 14355134 C T MKL2 Missense_Mutation p.P995S 0.23 tolerated(0.74) benign(0.047) TCGA-D3-A8GQ-06 16 14755862 14755862 C T BFAR Silent p.I299I 0.25 TCGA-D3-A8GQ-06 16 15711273 15711273 G A KIAA0430 Missense_Mutation p.P947L 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 16 19033108 19033108 C T TMC7 Silent p.F206F 0.35 TCGA-D3-A8GQ-06 16 19067915 19067915 G A TMC7 Nonsense_Mutation p.W641* 0.34 TCGA-D3-A8GQ-06 16 19452111 19452111 G A TMC5 Missense_Mutation p.D251N 0.34 tolerated(0.15) benign(0.06) TCGA-D3-A8GQ-06 16 19522235 19522235 G T GDE1 Missense_Mutation p.L157I 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A8GQ-06 16 2028713 2028713 C T TBL3 3'UTR 0.24 TCGA-D3-A8GQ-06 16 20335174 20335174 C T GP2 Missense_Mutation p.E167K 0.27 tolerated(0.54) benign(0.044) TCGA-D3-A8GQ-06 16 20480865 20480865 G A ACSM2A Missense_Mutation p.M140I 0.31 deleterious(0) possibly_damaging(0.687) TCGA-D3-A8GQ-06 16 20486756 20486756 C T ACSM2A Missense_Mutation p.L323F 0.40 tolerated(0.17) possibly_damaging(0.453) TCGA-D3-A8GQ-06 16 20566707 20566707 C T ACSM2B Silent p.G160G 0.30 TCGA-D3-A8GQ-06 16 20948157 20948157 C T DNAH3 Silent p.R3891R 0.14 TCGA-D3-A8GQ-06 16 2283049 2283049 A C E4F1 Silent p.T307T 0.24 TCGA-D3-A8GQ-06 16 23504762 23504762 C T GGA2 Missense_Mutation p.M90I 0.20 deleterious(0.05) benign(0.063) TCGA-D3-A8GQ-06 16 28513323 28513323 C T IL27 Missense_Mutation p.D146N 0.31 deleterious(0.01) possibly_damaging(0.482) TCGA-D3-A8GQ-06 16 2871548 2871548 C T PRSS21 Missense_Mutation p.S296F 0.30 deleterious(0) unknown(0) TCGA-D3-A8GQ-06 16 29107473 29107473 G A RRN3P2 RNA 0.37 TCGA-D3-A8GQ-06 16 30106734 30106734 G A YPEL3 Missense_Mutation p.P24S 0.36 tolerated_low_confidence(0.18) benign(0.001) TCGA-D3-A8GQ-06 16 30106735 30106735 G A YPEL3 Silent p.S23S 0.36 TCGA-D3-A8GQ-06 16 3142180 3142180 C T ZSCAN10 Silent p.S123S 0.33 TCGA-D3-A8GQ-06 16 3339503 3339503 G A ZNF263 Missense_Mutation p.E333K 0.28 tolerated(0.19) benign(0.073) TCGA-D3-A8GQ-06 16 422718 422718 G A TMEM8A Missense_Mutation p.L638F 0.26 deleterious(0.01) possibly_damaging(0.836) TCGA-D3-A8GQ-06 16 4411196 4411196 C T CORO7 Missense_Mutation p.E581K 0.51 deleterious(0.05) benign(0.002) TCGA-D3-A8GQ-06 16 46763549 46763549 G A MYLK3 Missense_Mutation p.P540L 0.23 tolerated(0.29) benign(0.012) TCGA-D3-A8GQ-06 16 4731574 4731574 C T MGRN1 Silent p.G385G 0.30 TCGA-D3-A8GQ-06 16 4764061 4764061 G A ANKS3 Missense_Mutation p.R234W 0.36 deleterious(0.01) benign(0.01) TCGA-D3-A8GQ-06 16 48125092 48125092 C T ABCC12 Missense_Mutation p.R1075Q 0.27 deleterious(0.01) possibly_damaging(0.473) TCGA-D3-A8GQ-06 16 48174645 48174645 C T ABCC12 Missense_Mutation p.E204K 0.32 tolerated(0.23) benign(0.014) TCGA-D3-A8GQ-06 16 48296762 48296762 C T LONP2 Missense_Mutation p.P321S 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 16 48296763 48296763 C T LONP2 Missense_Mutation p.P321L 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 16 49764882 49764882 C T ZNF423 Missense_Mutation p.G26E 0.32 tolerated_low_confidence(0.06) benign(0.05) TCGA-D3-A8GQ-06 16 50104108 50104108 C T HEATR3 Missense_Mutation p.S140L 0.31 tolerated(0.17) benign(0.118) TCGA-D3-A8GQ-06 16 50707752 50707752 G A SNX20 Silent p.R172R 0.32 TCGA-D3-A8GQ-06 16 50753890 50753890 C T NOD2 Silent p.L895L 0.22 TCGA-D3-A8GQ-06 16 51175015 51175015 G A SALL1 Missense_Mutation p.S373L 0.29 deleterious(0) benign(0.178) TCGA-D3-A8GQ-06 16 51175391 51175391 C T SALL1 Missense_Mutation p.E248K 0.30 deleterious(0) benign(0.043) TCGA-D3-A8GQ-06 16 51175907 51175907 C T SALL1 Missense_Mutation p.E76K 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GQ-06 16 55731925 55731925 C T SLC6A2 Silent p.F459F 0.25 TCGA-D3-A8GQ-06 16 55890354 55890354 C T CES5A Missense_Mutation p.E383K 0.29 tolerated(0.73) benign(0.124) TCGA-D3-A8GQ-06 16 55890355 55890355 C T CES5A Silent p.K382K 0.29 TCGA-D3-A8GQ-06 16 56370755 56370755 C T GNAO1 Missense_Mutation p.H236Y 0.17 tolerated(1) benign(0.075) TCGA-D3-A8GQ-06 16 56904081 56904081 C T SLC12A3 Silent p.F225F 0.32 TCGA-D3-A8GQ-06 16 57003334 57003334 G A CETP Silent p.Q90Q 0.24 TCGA-D3-A8GQ-06 16 57081511 57081511 G A NLRC5 Silent p.L1131L 0.36 TCGA-D3-A8GQ-06 16 57559840 57559840 G A CCDC102A Missense_Mutation p.S262F 0.45 tolerated(0.85) probably_damaging(0.989) TCGA-D3-A8GQ-06 16 57596041 57596041 C A GPR114 Nonsense_Mutation p.C12* 0.24 TCGA-D3-A8GQ-06 16 58712251 58712251 G A SLC38A7 Silent p.F199F 0.31 TCGA-D3-A8GQ-06 16 66998560 66998560 G A CES3 Missense_Mutation p.R250K 0.25 tolerated(0.71) possibly_damaging(0.462) TCGA-D3-A8GQ-06 16 67318735 67318760 CCACTTCCGAAAGATGTGGGCTCTGG - PLEKHG4 Frame_Shift_Del p.F606Gfs*30 0.19 TCGA-D3-A8GQ-06 16 67690153 67690153 G C RLTPR Silent p.T1255T 0.28 TCGA-D3-A8GQ-06 16 67692106 67692106 G A ACD Missense_Mutation p.S416F 0.29 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-D3-A8GQ-06 16 67694211 67694211 C T ACD Silent p.A57A 0.54 TCGA-D3-A8GQ-06 16 68026439 68026439 G A DPEP2 Missense_Mutation p.L122F 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-D3-A8GQ-06 16 70048026 70048026 G A PDXDC2P RNA 0.23 TCGA-D3-A8GQ-06 16 70942713 70942713 C T HYDIN Missense_Mutation p.E2686K 0.22 possibly_damaging(0.801) TCGA-D3-A8GQ-06 16 71004477 71004477 G A HYDIN Silent p.F1855F 0.25 TCGA-D3-A8GQ-06 16 71015334 71015334 G A HYDIN Silent p.I1490I 0.23 TCGA-D3-A8GQ-06 16 7102093 7102093 G A RBFOX1 Silent p.Q7Q 0.35 TCGA-D3-A8GQ-06 16 71318298 71318298 G A CMTR2 Missense_Mutation p.P509L 0.21 deleterious(0.02) benign(0.02) TCGA-D3-A8GQ-06 16 71674744 71674744 G A MARVELD3 Missense_Mutation p.M349I 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-D3-A8GQ-06 16 71674745 71674745 G A MARVELD3 Missense_Mutation p.D350N 0.24 tolerated(1) benign(0) TCGA-D3-A8GQ-06 16 71682770 71682770 C T PHLPP2 3'UTR 0.51 TCGA-D3-A8GQ-06 16 72110846 72110846 G A HPR Missense_Mutation p.D305N 0.32 tolerated(0.05) possibly_damaging(0.573) TCGA-D3-A8GQ-06 16 72174374 72174374 C T PMFBP1 Silent p.K248K 0.28 TCGA-D3-A8GQ-06 16 73126809 73126809 C T HCCAT5 RNA 0.30 TCGA-D3-A8GQ-06 16 76482806 76482806 C T CNTNAP4 Silent p.F270F 0.25 TCGA-D3-A8GQ-06 16 76486570 76486570 C T CNTNAP4 Nonsense_Mutation p.Q340* 0.29 TCGA-D3-A8GQ-06 16 77356346 77356346 G A ADAMTS18 Silent p.L684L 0.31 TCGA-D3-A8GQ-06 16 77918681 77918681 C T VAT1L Silent p.S353S 0.25 TCGA-D3-A8GQ-06 16 81295823 81295823 T C BCMO1 Missense_Mutation p.Y136H 0.34 deleterious(0.01) benign(0.33) TCGA-D3-A8GQ-06 16 81954832 81954832 C T PLCG2 Silent p.V755V 0.30 TCGA-D3-A8GQ-06 16 83520120 83520120 G A CDH13 Missense_Mutation p.D321N 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 16 83520143 83520143 C T CDH13 Silent p.L328L 0.37 TCGA-D3-A8GQ-06 16 84224788 84224788 G T ADAD2 5'UTR 0.42 TCGA-D3-A8GQ-06 16 84256483 84256483 G A KCNG4 Silent p.I300I 0.21 TCGA-D3-A8GQ-06 16 85132795 85132795 A G FAM92B Missense_Mutation p.L304P 0.24 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-D3-A8GQ-06 16 88694463 88694463 C T ZC3H18 Missense_Mutation p.P802L 0.41 deleterious_low_confidence(0) benign(0.425) TCGA-D3-A8GQ-06 16 88694464 88694464 C T ZC3H18 Silent p.P802P 0.41 TCGA-D3-A8GQ-06 16 88902217 88902217 G A GALNS Missense_Mutation p.P225L 0.24 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GQ-06 16 8904969 8904969 A G PMM2 Silent p.L127L 0.29 TCGA-D3-A8GQ-06 16 89180821 89180821 T C ACSF3 Missense_Mutation p.L351P 0.30 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 16 89346895 89346895 G A ANKRD11 Missense_Mutation p.P2019S 0.39 benign(0) TCGA-D3-A8GQ-06 16 89663103 89663103 C T CPNE7 3'UTR 0.27 TCGA-D3-A8GQ-06 16 89851310 89851310 A G FANCA Silent p.F474F 0.28 TCGA-D3-A8GQ-06 16 9858267 9858267 G A GRIN2A Missense_Mutation p.S1045F 0.33 tolerated(0.05) possibly_damaging(0.87) TCGA-D3-A8GQ-06 17 10356471 10356471 C T MYH4 Missense_Mutation p.D1037N 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GQ-06 17 10400499 10400499 C T MYH1 Missense_Mutation p.D1515N 0.25 tolerated(0.06) probably_damaging(0.967) TCGA-D3-A8GQ-06 17 10401103 10401103 C T MYH1 Missense_Mutation p.R1438K 0.24 tolerated(0.22) possibly_damaging(0.514) TCGA-D3-A8GQ-06 17 10447086 10447086 G A MYH2 Missense_Mutation p.P228L 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 17 11556263 11556263 G A DNAH9 Missense_Mutation p.E847K 0.32 benign(0.004) TCGA-D3-A8GQ-06 17 11572863 11572863 C T DNAH9 Silent p.L1035L 0.22 TCGA-D3-A8GQ-06 17 11711136 11711136 G A DNAH9 Silent p.R2836R 0.34 TCGA-D3-A8GQ-06 17 12666750 12666750 C T MYOCD Missense_Mutation p.S917L 0.25 tolerated(0.11) probably_damaging(0.999) TCGA-D3-A8GQ-06 17 12859221 12859221 C T ARHGAP44 Nonsense_Mutation p.Q392* 0.43 TCGA-D3-A8GQ-06 17 15890605 15890605 G A ZSWIM7 Missense_Mutation p.S59L 0.29 deleterious(0.01) benign(0.218) TCGA-D3-A8GQ-06 17 16596321 16596321 G A CCDC144A Missense_Mutation p.E125K 0.33 tolerated_low_confidence(0.2) benign(0.005) TCGA-D3-A8GQ-06 17 16665669 16665669 G A CCDC144A Missense_Mutation p.E1237K 0.36 tolerated(0.14) possibly_damaging(0.507) TCGA-D3-A8GQ-06 17 17415841 17415841 A G PEMT Missense_Mutation p.F150L 0.33 tolerated(0.09) possibly_damaging(0.729) TCGA-D3-A8GQ-06 17 18022715 18022715 G A MYO15A Missense_Mutation p.E201K 0.16 probably_damaging(0.945) TCGA-D3-A8GQ-06 17 18051452 18051452 C T MYO15A Missense_Mutation p.P2207S 0.26 unknown(0) TCGA-D3-A8GQ-06 17 18916793 18916793 C T SLC5A10 Silent p.I367I 0.42 TCGA-D3-A8GQ-06 17 19015841 19015841 G A SNORD3D RNA 0.08 TCGA-D3-A8GQ-06 17 19216587 19216587 C T EPN2 Missense_Mutation p.S381L 0.28 tolerated(0.22) benign(0.003) TCGA-D3-A8GQ-06 17 19769055 19769055 G A ULK2 Silent p.I59I 0.22 TCGA-D3-A8GQ-06 17 27308495 27308495 G A SEZ6 Silent p.I206I 0.38 TCGA-D3-A8GQ-06 17 28749903 28749903 C T CPD Missense_Mutation p.P507S 0.32 tolerated(0.6) benign(0.009) TCGA-D3-A8GQ-06 17 29664835 29664835 A T NF1 Splice_Site p.X2215_splice 0.28 TCGA-D3-A8GQ-06 17 2995776 2995776 C T OR1D2 Missense_Mutation p.R172Q 0.28 tolerated(0.13) benign(0.023) TCGA-D3-A8GQ-06 17 3030226 3030226 C - OR1G1 Frame_Shift_Del p.G207Dfs*8 0.20 TCGA-D3-A8GQ-06 17 3181672 3181672 G A OR3A2 Silent p.F186F 0.31 TCGA-D3-A8GQ-06 17 36455365 36455365 C T MRPL45 Missense_Mutation p.S98L 0.33 deleterious(0) benign(0.128) TCGA-D3-A8GQ-06 17 36486841 36486841 C T GPR179 Missense_Mutation p.E871K 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-D3-A8GQ-06 17 36876752 36876752 C T MLLT6 Silent p.F761F 0.28 TCGA-D3-A8GQ-06 17 37818555 37818555 C T STARD3 Silent p.P397P 0.30 TCGA-D3-A8GQ-06 17 3786763 3786763 G A CAMKK1 Silent p.V158V 0.18 TCGA-D3-A8GQ-06 17 38978402 38978402 C T KRT10 Missense_Mutation p.E146K 0.34 deleterious(0.01) possibly_damaging(0.779) TCGA-D3-A8GQ-06 17 39038846 39038846 C T KRT20 Missense_Mutation p.A151T 0.39 deleterious(0.03) possibly_damaging(0.566) TCGA-D3-A8GQ-06 17 39383077 39383077 T G KRTAP9-2 Missense_Mutation p.C57W 0.22 deleterious(0) unknown(0) TCGA-D3-A8GQ-06 17 39537986 39537986 G T KRT34 Missense_Mutation p.A179D 0.31 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GQ-06 17 39580460 39580460 C T KRT37 Missense_Mutation p.E106K 0.34 deleterious(0.01) benign(0.072) TCGA-D3-A8GQ-06 17 39780522 39780522 C T KRT17 Silent p.L80L 0.43 TCGA-D3-A8GQ-06 17 40328199 40328199 G A KCNH4 Silent p.L234L 0.26 TCGA-D3-A8GQ-06 17 41063550 41063550 C T G6PC 3'UTR 0.36 TCGA-D3-A8GQ-06 17 41346992 41346992 C T NBR1 Silent p.S562S 0.27 TCGA-D3-A8GQ-06 17 42113646 42113646 A - LSM12 Frame_Shift_Del p.V173Gfs*85 0.21 TCGA-D3-A8GQ-06 17 43309848 43309848 G A FMNL1 Splice_Site p.X109_splice 0.28 TCGA-D3-A8GQ-06 17 4349435 4349435 C T SPNS3 Silent p.F165F 0.20 TCGA-D3-A8GQ-06 17 44791277 44791277 C T NSF Silent p.F562F 0.23 TCGA-D3-A8GQ-06 17 45368378 45368378 C T ITGB3 Missense_Mutation p.S395F 0.36 tolerated(0.2) benign(0.099) TCGA-D3-A8GQ-06 17 4574779 4574779 G A PELP1 Silent p.P1116P 0.22 TCGA-D3-A8GQ-06 17 4636484 4636484 C T MED11 3'UTR 0.32 TCGA-D3-A8GQ-06 17 4712458 4712458 G A PLD2 Silent p.R149R 0.29 TCGA-D3-A8GQ-06 17 47210413 47210413 G A B4GALNT2 Missense_Mutation p.G9E 0.16 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-D3-A8GQ-06 17 48676860 48676860 G A CACNA1G Silent p.R1110R 0.45 TCGA-D3-A8GQ-06 17 48703880 48703880 G C CACNA1G Missense_Mutation p.R2301P 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-D3-A8GQ-06 17 48745067 48745067 G A ABCC3 Silent p.A528A 0.56 TCGA-D3-A8GQ-06 17 5085401 5085401 G A ZNF594 Silent p.F717F 0.30 TCGA-D3-A8GQ-06 17 51900853 51900853 C T KIF2B Silent p.I153I 0.27 TCGA-D3-A8GQ-06 17 51902291 51902291 G A KIF2B Missense_Mutation p.D633N 0.19 tolerated(0.08) benign(0.025) TCGA-D3-A8GQ-06 17 5462554 5462554 C T NLRP1 Missense_Mutation p.E488K 0.22 tolerated(0.26) benign(0.223) TCGA-D3-A8GQ-06 17 5463006 5463006 C T NLRP1 Missense_Mutation p.G337E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 17 55074320 55074320 C T SCPEP1 Intron 0.25 TCGA-D3-A8GQ-06 17 56247763 56247763 G A OR4D2 Missense_Mutation p.M249I 0.26 tolerated(0.11) benign(0.02) TCGA-D3-A8GQ-06 17 56349174 56349174 C T MPO Silent p.L624L 0.18 TCGA-D3-A8GQ-06 17 56620248 56620248 C T C17orf47 Missense_Mutation p.E434K 0.49 tolerated(0.16) benign(0.043) TCGA-D3-A8GQ-06 17 60059743 60059743 G A MED13 Silent p.D1207D 0.20 TCGA-D3-A8GQ-06 17 61498624 61498624 G A TANC2 Missense_Mutation p.E1761K 0.22 deleterious_low_confidence(0.02) benign(0.091) TCGA-D3-A8GQ-06 17 61972457 61972457 C T CSH1 Silent p.R193R 0.45 TCGA-D3-A8GQ-06 17 63221166 63221166 G T RGS9 Missense_Mutation p.G485V 0.18 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GQ-06 17 6554934 6554934 C T MED31 5'UTR 0.40 TCGA-D3-A8GQ-06 17 65735085 65735085 C T NOL11 Missense_Mutation p.L601F 0.23 deleterious(0) probably_damaging(0.92) TCGA-D3-A8GQ-06 17 66303684 66303684 G A ARSG Missense_Mutation p.G17E 0.27 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GQ-06 17 66937037 66937037 C T ABCA8 Missense_Mutation p.D55N 0.24 tolerated(0.09) benign(0.33) TCGA-D3-A8GQ-06 17 66992048 66992048 G A ABCA9 Silent p.F1181F 0.23 TCGA-D3-A8GQ-06 17 6929789 6929789 C T BCL6B Silent p.F301F 0.40 TCGA-D3-A8GQ-06 17 71232126 71232126 G - C17orf80 Frame_Shift_Del p.A169Lfs*10 0.20 TCGA-D3-A8GQ-06 17 72477957 72477957 G A CD300A Silent p.V253V 0.45 TCGA-D3-A8GQ-06 17 72519575 72519575 G A CD300LB Intron 0.36 TCGA-D3-A8GQ-06 17 7323841 7323841 G A SPEM1 Silent p.V46V 0.32 TCGA-D3-A8GQ-06 17 7365341 7365341 G A ZBTB4 Missense_Mutation p.P987L 0.34 benign(0.001) TCGA-D3-A8GQ-06 17 73746257 73746257 G A ITGB4 Missense_Mutation p.G1128S 0.31 tolerated_low_confidence(0.47) benign(0.317) TCGA-D3-A8GQ-06 17 76060873 76060873 C T TNRC6C Silent p.S819S 0.25 TCGA-D3-A8GQ-06 17 76464806 76464806 C T DNAH17 Missense_Mutation p.E2877K 0.29 possibly_damaging(0.908) TCGA-D3-A8GQ-06 17 76471487 76471487 C T DNAH17 Missense_Mutation p.G2781E 0.20 probably_damaging(0.999) TCGA-D3-A8GQ-06 17 76567033 76567033 C T DNAH17 Silent p.T305T 0.40 TCGA-D3-A8GQ-06 17 7674656 7674656 C T DNAH2 Silent p.F1457F 0.30 TCGA-D3-A8GQ-06 17 7691220 7691220 C T DNAH2 Missense_Mutation p.P2216S 0.30 probably_damaging(0.999) TCGA-D3-A8GQ-06 17 77755810 77755810 C T CBX2 Intron 0.20 TCGA-D3-A8GQ-06 17 78314014 78314014 C T RNF213 Silent p.F1949F 0.54 TCGA-D3-A8GQ-06 17 78333945 78333945 G A RNF213 Nonsense_Mutation p.W3713* 0.39 TCGA-D3-A8GQ-06 17 79650851 79650851 C T ARL16 Missense_Mutation p.R2K 0.32 deleterious_low_confidence(0) benign(0.067) TCGA-D3-A8GQ-06 17 8054107 8054107 G A PER1 5'UTR 0.30 TCGA-D3-A8GQ-06 17 8248987 8248987 G A ODF4 Silent p.A197A 0.30 TCGA-D3-A8GQ-06 17 8660636 8660636 C T SPDYE4 Missense_Mutation p.R95Q 0.35 tolerated(0.12) benign(0.238) TCGA-D3-A8GQ-06 17 9674959 9674959 A T DHRS7C Missense_Mutation p.V262E 0.25 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GQ-06 18 13067897 13067897 C T CEP192 Missense_Mutation p.P1519L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 18 19997458 19997458 C T CTAGE1 Missense_Mutation p.R106K 0.23 tolerated(0.44) benign(0.012) TCGA-D3-A8GQ-06 18 22040865 22040865 C T HRH4 Missense_Mutation p.A58V 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 18 28651788 28651788 G A DSC2 Silent p.S636S 0.23 TCGA-D3-A8GQ-06 18 28659902 28659902 C T DSC2 Missense_Mutation p.G525E 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 18 28710796 28710796 G A DSC1 Intron 0.19 TCGA-D3-A8GQ-06 18 28719834 28719834 C T DSC1 Missense_Mutation p.E514K 0.31 deleterious(0.03) benign(0.225) TCGA-D3-A8GQ-06 18 28968350 28968350 G A DSG4 Silent p.S79S 0.37 TCGA-D3-A8GQ-06 18 2945985 2945985 G A LPIN2 Intron 0.39 TCGA-D3-A8GQ-06 18 31318883 31318883 G A ASXL3 Missense_Mutation p.M505I 0.19 probably_damaging(0.985) TCGA-D3-A8GQ-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.29 benign(0.006) TCGA-D3-A8GQ-06 18 34156502 34156502 G A FHOD3 Silent p.G200G 0.38 TCGA-D3-A8GQ-06 18 42530386 42530386 G A SETBP1 Missense_Mutation p.A361T 0.34 deleterious(0.02) benign(0.008) TCGA-D3-A8GQ-06 18 42530550 42530550 C T SETBP1 Silent p.N415N 0.25 TCGA-D3-A8GQ-06 18 42643287 42643287 T G SETBP1 Missense_Mutation p.M1472R 0.27 deleterious(0) probably_damaging(0.974) TCGA-D3-A8GQ-06 18 43311165 43311165 G A SLC14A1 Missense_Mutation p.D169N 0.23 tolerated(0.18) possibly_damaging(0.715) TCGA-D3-A8GQ-06 18 47511176 47511176 G A MYO5B Silent p.F286F 0.31 TCGA-D3-A8GQ-06 18 48252484 48252484 G A MAPK4 Missense_Mutation p.D336N 0.39 tolerated(0.05) probably_damaging(0.99) TCGA-D3-A8GQ-06 18 48575077 48575077 C T SMAD4 Missense_Mutation p.P91S 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 18 50985602 50985602 G A DCC Silent p.K1131K 0.36 TCGA-D3-A8GQ-06 18 56203078 56203078 G A ALPK2 Silent p.I1447I 0.36 TCGA-D3-A8GQ-06 18 57103238 57103238 G A CCBE1 Missense_Mutation p.P375S 0.35 tolerated_low_confidence(1) benign(0) TCGA-D3-A8GQ-06 18 59483058 59483058 C T RNF152 3'UTR 0.29 TCGA-D3-A8GQ-06 18 61324136 61324136 C T SERPINB3 Missense_Mutation p.E233K 0.36 deleterious(0.03) probably_damaging(0.988) TCGA-D3-A8GQ-06 18 61390293 61390293 G A SERPINB11 Missense_Mutation p.R280K 0.27 tolerated(0.3) benign(0.012) TCGA-D3-A8GQ-06 18 61449714 61449714 C T SERPINB7 Silent p.F36F 0.28 TCGA-D3-A8GQ-06 18 61471575 61471575 G A SERPINB7 Silent p.K283K 0.21 TCGA-D3-A8GQ-06 18 66678270 66678270 G A CCDC102B Missense_Mutation p.E455K 0.35 deleterious(0.04) benign(0.096) TCGA-D3-A8GQ-06 18 67406255 67406255 G A DOK6 Missense_Mutation p.M218I 0.34 tolerated(0.2) benign(0.145) TCGA-D3-A8GQ-06 18 67563090 67563090 G A CD226 Missense_Mutation p.P192S 0.31 tolerated(0.17) benign(0.229) TCGA-D3-A8GQ-06 18 67563226 67563226 C T CD226 Silent p.K146K 0.32 TCGA-D3-A8GQ-06 18 6966245 6966245 G A LAMA1 Silent p.V2317V 0.42 TCGA-D3-A8GQ-06 18 70417353 70417353 G A NETO1 Silent p.I495I 0.30 TCGA-D3-A8GQ-06 18 70532841 70532841 G A NETO1 Intron 0.42 TCGA-D3-A8GQ-06 18 77170524 77170524 G A NFATC1 Silent p.A70A 0.32 TCGA-D3-A8GQ-06 18 77170525 77170525 G A NFATC1 Missense_Mutation p.D71N 0.31 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 19 10090087 10090087 G A COL5A3 Nonsense_Mutation p.Q907* 0.27 TCGA-D3-A8GQ-06 19 10103517 10103517 G A COL5A3 Missense_Mutation p.P612S 0.42 unknown(0) TCGA-D3-A8GQ-06 19 11216030 11216030 C T LDLR Missense_Mutation p.P150S 0.26 tolerated(0.13) benign(0.356) TCGA-D3-A8GQ-06 19 1257107 1257107 C T MIDN Missense_Mutation p.P415S 0.45 tolerated(0.05) possibly_damaging(0.641) TCGA-D3-A8GQ-06 19 15740024 15740024 C T CYP4F8 RNA 0.24 TCGA-D3-A8GQ-06 19 15852545 15852545 C T OR10H3 Missense_Mutation p.L115F 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 19 15905169 15905169 C T OR10H5 Missense_Mutation p.S104F 0.28 tolerated(1) benign(0.078) TCGA-D3-A8GQ-06 19 15905170 15905170 C T OR10H5 Silent p.S104S 0.28 TCGA-D3-A8GQ-06 19 16665975 16665975 G A SLC35E1 Silent p.F330F 0.27 TCGA-D3-A8GQ-06 19 17301911 17301911 C T MYO9B Silent p.F898F 0.26 TCGA-D3-A8GQ-06 19 17897412 17897412 G A FCHO1 Missense_Mutation p.R819K 0.35 tolerated(1) benign(0.002) TCGA-D3-A8GQ-06 19 17946809 17946809 C T JAK3 Missense_Mutation p.R613Q 0.39 deleterious(0.05) benign(0.037) TCGA-D3-A8GQ-06 19 18507683 18507683 C T LRRC25 Missense_Mutation p.D31N 0.34 tolerated(0.9) benign(0.001) TCGA-D3-A8GQ-06 19 18538720 18538720 C T SSBP4 Silent p.D69D 0.29 TCGA-D3-A8GQ-06 19 19337555 19337555 G A NCAN Missense_Mutation p.E445K 0.33 tolerated(0.07) benign(0.156) TCGA-D3-A8GQ-06 19 2115574 2115574 C T AP3D1 Silent p.V704V 0.32 TCGA-D3-A8GQ-06 19 21240267 21240267 T C ZNF430 Missense_Mutation p.F385L 0.18 tolerated(0.27) benign(0.002) TCGA-D3-A8GQ-06 19 21544637 21544637 C T ZNF738 Silent p.L25L 0.30 TCGA-D3-A8GQ-06 19 22170068 22170068 C T ZNF208 Missense_Mutation p.G59E 0.29 tolerated(0.13) benign(0.113) TCGA-D3-A8GQ-06 19 22364370 22364370 G A ZNF676 Missense_Mutation p.S50F 0.31 deleterious(0) benign(0.058) TCGA-D3-A8GQ-06 19 22847688 22847688 C T ZNF492 Missense_Mutation p.S406L 0.26 deleterious(0.02) benign(0.011) TCGA-D3-A8GQ-06 19 2416781 2416781 G A TMPRSS9 Missense_Mutation p.G630E 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 19 2878473 2878473 C T ZNF556 3'UTR 0.30 TCGA-D3-A8GQ-06 19 30164986 30164986 C A PLEKHF1 Silent p.I80I 0.26 TCGA-D3-A8GQ-06 19 30934685 30934685 G A ZNF536 Missense_Mutation p.M72I 0.24 tolerated_low_confidence(0.17) benign(0) TCGA-D3-A8GQ-06 19 31025807 31025807 C T ZNF536 Missense_Mutation p.R742C 0.31 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 19 33359396 33359396 C T SLC7A9 Silent p.S15S 0.27 TCGA-D3-A8GQ-06 19 33392170 33392170 G T CEP89 Silent p.R572R 0.32 TCGA-D3-A8GQ-06 19 33608872 33608872 C T GPATCH1 Nonsense_Mutation p.Q780* 0.27 TCGA-D3-A8GQ-06 19 34687590 34687590 C T LSM14A Missense_Mutation p.P113S 0.26 tolerated(0.14) possibly_damaging(0.517) TCGA-D3-A8GQ-06 19 36149569 36149569 C T COX6B1 3'UTR 0.31 TCGA-D3-A8GQ-06 19 36233509 36233509 G A U2AF1L4 Missense_Mutation p.S200F 0.32 deleterious_low_confidence(0) benign(0.144) TCGA-D3-A8GQ-06 19 36832064 36832064 G A ZFP14 Missense_Mutation p.H222Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GQ-06 19 3732020 3732020 G A TJP3 Missense_Mutation p.G243E 0.23 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GQ-06 19 37676725 37676725 G A ZNF585B Missense_Mutation p.H572Y 0.17 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GQ-06 19 38774283 38774283 G A SPINT2 Silent p.S41S 0.35 TCGA-D3-A8GQ-06 19 38781187 38781187 G A SPINT2 Silent p.E188E 0.39 TCGA-D3-A8GQ-06 19 38948236 38948236 C T RYR1 Silent p.L631L 0.22 TCGA-D3-A8GQ-06 19 39805548 39805548 G A LRFN1 Silent p.I143I 0.36 TCGA-D3-A8GQ-06 19 4054838 4054838 G A ZBTB7A Silent p.I131I 0.40 TCGA-D3-A8GQ-06 19 40698500 40698500 G A MAP3K10 Missense_Mutation p.G188S 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 19 40698501 40698501 G A MAP3K10 Missense_Mutation p.G188D 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 19 41239111 41239111 C A ITPKC Missense_Mutation p.P506T 0.31 tolerated(0.26) probably_damaging(0.98) TCGA-D3-A8GQ-06 19 41239112 41239112 C T ITPKC Missense_Mutation p.P506L 0.30 tolerated(0.83) possibly_damaging(0.566) TCGA-D3-A8GQ-06 19 41351981 41351981 C T CYP2A6 Missense_Mutation p.E285K 0.22 possibly_damaging(0.881) TCGA-D3-A8GQ-06 19 41384713 41384713 G T CYP2A7 Silent p.P261P 0.30 TCGA-D3-A8GQ-06 19 42132082 42132082 G A CEACAM4 Missense_Mutation p.S106F 0.30 deleterious(0) probably_damaging(0.97) TCGA-D3-A8GQ-06 19 42222071 42222071 C T CEACAM5 Missense_Mutation p.S421F 0.31 tolerated(0.08) possibly_damaging(0.87) TCGA-D3-A8GQ-06 19 42312913 42312913 G A CEACAM3 Missense_Mutation p.G163R 0.28 tolerated(0.15) benign(0.008) TCGA-D3-A8GQ-06 19 42599591 42599591 C T POU2F2 Silent p.E326E 0.20 TCGA-D3-A8GQ-06 19 43268092 43268092 C T PSG8 Missense_Mutation p.G136R 0.27 deleterious(0.04) possibly_damaging(0.902) TCGA-D3-A8GQ-06 19 43371171 43371171 C T PSG1 3'Flank 0.42 TCGA-D3-A8GQ-06 19 43371969 43371969 C T PSG1 3'UTR 0.27 TCGA-D3-A8GQ-06 19 43428847 43428847 C T PSG7 3'UTR 0.24 TCGA-D3-A8GQ-06 19 43766244 43766244 C T PSG9 Silent p.R159R 0.32 TCGA-D3-A8GQ-06 19 44492679 44492679 C T ZNF155 5'UTR 0.19 TCGA-D3-A8GQ-06 19 44896559 44896559 C T ZNF285 Silent p.Q29Q 0.22 TCGA-D3-A8GQ-06 19 44933871 44933871 G A ZNF229 Missense_Mutation p.S362L 0.29 tolerated(0.09) benign(0.007) TCGA-D3-A8GQ-06 19 44933922 44933922 C T ZNF229 Missense_Mutation p.G345E 0.34 tolerated(0.09) benign(0.044) TCGA-D3-A8GQ-06 19 45316567 45316567 G A BCAM Missense_Mutation p.G189R 0.32 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 19 45322691 45322691 C T BCAM Missense_Mutation p.S521F 0.25 tolerated(0.34) benign(0.109) TCGA-D3-A8GQ-06 19 46178253 46178253 G A GIPR Intron 0.50 TCGA-D3-A8GQ-06 19 46307914 46307914 C T RSPH6A Missense_Mutation p.E417K 0.23 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 19 47712451 47712451 C T SAE1 Silent p.F328F 0.18 TCGA-D3-A8GQ-06 19 47844884 47844884 C T C5AR2 Silent p.I276I 0.26 TCGA-D3-A8GQ-06 19 4816379 4816379 G A TICAM1 Missense_Mutation p.P671S 0.34 deleterious(0.03) probably_damaging(0.966) TCGA-D3-A8GQ-06 19 50029424 50029424 C T FCGRT 3'UTR 0.39 TCGA-D3-A8GQ-06 19 50247522 50247522 G A TSKS Missense_Mutation p.R443W 0.31 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 19 52550254 52550254 G A ZNF432 5'UTR 0.21 TCGA-D3-A8GQ-06 19 52934702 52934702 G A ZNF534 5'UTR 0.36 TCGA-D3-A8GQ-06 19 52934703 52934703 G A ZNF534 5'UTR 0.36 TCGA-D3-A8GQ-06 19 53014260 53014260 G A ZNF578 Missense_Mutation p.G209E 0.36 tolerated(0.18) benign(0.022) TCGA-D3-A8GQ-06 19 53208586 53208586 G A ZNF611 Silent p.T574T 0.23 TCGA-D3-A8GQ-06 19 53208587 53208587 G A ZNF611 Missense_Mutation p.T574I 0.23 deleterious(0.03) probably_damaging(0.932) TCGA-D3-A8GQ-06 19 53473322 53473322 G A ZNF702P RNA 0.29 TCGA-D3-A8GQ-06 19 53612234 53612234 G A ZNF415 Missense_Mutation p.P355L 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-D3-A8GQ-06 19 53668415 53668415 G A ZNF665 Missense_Mutation p.S443L 0.26 deleterious(0.03) possibly_damaging(0.525) TCGA-D3-A8GQ-06 19 53913091 53913091 C T ZNF765 3'UTR 0.19 TCGA-D3-A8GQ-06 19 54265605 54265605 C T MIR519A2 RNA 0.23 TCGA-D3-A8GQ-06 19 54327237 54327237 G A NLRP12 Silent p.F64F 0.30 TCGA-D3-A8GQ-06 19 54844854 54844854 C T LILRA4 Missense_Mutation p.E497K 0.24 deleterious_low_confidence(0.04) benign(0.008) TCGA-D3-A8GQ-06 19 54849835 54849835 C T LILRA4 Missense_Mutation p.E63K 0.25 deleterious(0.04) benign(0.105) TCGA-D3-A8GQ-06 19 54849932 54849932 G A LILRA4 Silent p.I30I 0.35 TCGA-D3-A8GQ-06 19 55143584 55143584 C T LILRB1 Missense_Mutation p.P186L 0.27 deleterious(0.01) possibly_damaging(0.848) TCGA-D3-A8GQ-06 19 55284943 55284943 C T KIR2DL1 Missense_Mutation p.H77Y 0.58 tolerated(0.19) benign(0.292) TCGA-D3-A8GQ-06 19 55329798 55329798 C T KIR3DL1 Silent p.A33A 0.34 TCGA-D3-A8GQ-06 19 55396831 55396831 C T FCAR Silent p.F85F 0.28 TCGA-D3-A8GQ-06 19 55452978 55452978 G A NLRP7 Silent p.L34L 0.35 TCGA-D3-A8GQ-06 19 55493039 55493039 G A NLRP2 Missense_Mutation p.G151E 0.32 tolerated(1) benign(0.002) TCGA-D3-A8GQ-06 19 55889557 55889557 G A TMEM190 Missense_Mutation p.E174K 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A8GQ-06 19 56249473 56249473 C T NLRP9 Missense_Mutation p.E90K 0.29 tolerated(0.29) probably_damaging(0.945) TCGA-D3-A8GQ-06 19 56320842 56320842 C T NLRP11 Silent p.L378L 0.19 TCGA-D3-A8GQ-06 19 56321310 56321310 C T NLRP11 Silent p.K222K 0.28 TCGA-D3-A8GQ-06 19 56388464 56388464 C T NLRP4 Silent p.I876I 0.28 TCGA-D3-A8GQ-06 19 56423089 56423089 C T NLRP13 Silent p.R698R 0.30 TCGA-D3-A8GQ-06 19 56701853 56701853 C T ZSCAN5B Silent p.E277E 0.36 TCGA-D3-A8GQ-06 19 56901401 56901401 C T ZNF582 Silent p.V67V 0.15 TCGA-D3-A8GQ-06 19 56934375 56934375 C T ZNF583 Silent p.P116P 0.28 TCGA-D3-A8GQ-06 19 57133450 57133450 C T ZNF71 Silent p.T265T 0.29 TCGA-D3-A8GQ-06 19 57647364 57647364 G A ZIM3 Missense_Mutation p.T114M 0.31 tolerated(0.18) benign(0.003) TCGA-D3-A8GQ-06 19 58723047 58723047 C T ZNF274 Missense_Mutation p.S324F 0.26 tolerated(0.12) probably_damaging(0.944) TCGA-D3-A8GQ-06 19 6001878 6001878 G A RFX2 Missense_Mutation p.P603S 0.28 tolerated(0.1) benign(0.049) TCGA-D3-A8GQ-06 19 6001909 6001909 G A RFX2 Silent p.V592V 0.31 TCGA-D3-A8GQ-06 19 6690651 6690651 C T C3 Missense_Mutation p.E1160K 0.31 tolerated(0.77) benign(0.011) TCGA-D3-A8GQ-06 19 6853048 6853048 C T VAV1 Missense_Mutation p.P764S 0.19 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GQ-06 19 6896531 6896531 G A EMR1 Missense_Mutation p.D73N 0.38 tolerated(0.17) benign(0.201) TCGA-D3-A8GQ-06 19 6913826 6913826 C T EMR1 Missense_Mutation p.R429W 0.37 deleterious(0.01) possibly_damaging(0.776) TCGA-D3-A8GQ-06 19 6928265 6928265 G T EMR1 Intron 0.38 TCGA-D3-A8GQ-06 19 7998834 7998834 G A TIMM44 Missense_Mutation p.P200S 0.25 tolerated(0.43) benign(0.005) TCGA-D3-A8GQ-06 19 8191597 8191597 C T FBN3 Missense_Mutation p.D806N 0.28 deleterious(0.01) benign(0.111) TCGA-D3-A8GQ-06 19 8196507 8196507 C T FBN3 Missense_Mutation p.E641K 0.36 deleterious(0.01) probably_damaging(0.978) TCGA-D3-A8GQ-06 19 8389657 8389657 T C KANK3 Missense_Mutation p.T714A 0.25 tolerated(1) benign(0) TCGA-D3-A8GQ-06 19 8923284 8923284 G A ZNF558 Missense_Mutation p.P127S 0.29 tolerated(0.29) benign(0.003) TCGA-D3-A8GQ-06 19 8959596 8959596 G A MUC16 3'UTR 0.33 TCGA-D3-A8GQ-06 19 8987309 8987309 G A MUC16 Silent p.F13926F 0.30 TCGA-D3-A8GQ-06 19 9047798 9047798 G A MUC16 Missense_Mutation p.P11278L 0.27 benign(0) TCGA-D3-A8GQ-06 19 9049566 9049566 C T MUC16 Missense_Mutation p.E10689K 0.46 benign(0.007) TCGA-D3-A8GQ-06 19 9061397 9061397 C T MUC16 Silent p.G8683G 0.31 TCGA-D3-A8GQ-06 19 9063707 9063707 C T MUC16 Silent p.G7913G 0.38 TCGA-D3-A8GQ-06 19 9063708 9063708 C T MUC16 Missense_Mutation p.G7913E 0.38 unknown(0) TCGA-D3-A8GQ-06 19 9066603 9066603 G A MUC16 Missense_Mutation p.S6948F 0.31 unknown(0) TCGA-D3-A8GQ-06 19 9073228 9073228 C T MUC16 Missense_Mutation p.D4740N 0.27 unknown(0) TCGA-D3-A8GQ-06 19 9074862 9074862 G A MUC16 Missense_Mutation p.S4195F 0.23 unknown(0) TCGA-D3-A8GQ-06 19 9087346 9087346 G A MUC16 Missense_Mutation p.P1490L 0.33 unknown(0) TCGA-D3-A8GQ-06 19 9089737 9089737 C T MUC16 Missense_Mutation p.G693E 0.29 unknown(0) TCGA-D3-A8GQ-06 19 9204331 9204331 C T OR1M1 Silent p.S137S 0.28 TCGA-D3-A8GQ-06 19 9297336 9297336 G A OR7D2 Silent p.R293R 0.34 TCGA-D3-A8GQ-06 19 9579860 9579860 C T ZNF560 Nonsense_Mutation p.W178* 0.23 TCGA-D3-A8GQ-06 19 9585966 9585966 A G ZNF560 Silent p.C8C 0.19 TCGA-D3-A8GQ-06 19 9639325 9639325 G A ZNF426 Missense_Mutation p.H466Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 19 984376 984376 C T WDR18 Missense_Mutation p.A8V 0.33 tolerated(1) benign(0.006) TCGA-D3-A8GQ-06 1 10477169 10477169 C T PGD Missense_Mutation p.R324W 0.53 deleterious(0.01) benign(0.298) TCGA-D3-A8GQ-06 1 109529227 109529227 G A WDR47 Missense_Mutation p.H623Y 0.55 deleterious(0) possibly_damaging(0.654) TCGA-D3-A8GQ-06 1 109732219 109732219 G A KIAA1324 Missense_Mutation p.E452K 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GQ-06 1 114372637 114372637 G A PTPN22 Missense_Mutation p.R690C 0.63 tolerated(0.07) probably_damaging(0.944) TCGA-D3-A8GQ-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.55 deleterious(0) benign(0.109) TCGA-D3-A8GQ-06 1 115321893 115321893 G A SIKE1 Missense_Mutation p.S97F 0.54 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 1 115399859 115399859 C T SYCP1 Missense_Mutation p.A67V 0.42 tolerated(0.48) benign(0.04) TCGA-D3-A8GQ-06 1 11595625 11595625 C T PTCHD2 Missense_Mutation p.S1247F 0.65 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 1 117120087 117120087 G A IGSF3 Silent p.I1164I 0.65 TCGA-D3-A8GQ-06 1 117561112 117561112 C T CD101 Silent p.S649S 0.58 TCGA-D3-A8GQ-06 1 11855162 11855162 C T MTHFR Missense_Mutation p.D342N 0.63 tolerated(0.12) benign(0.412) TCGA-D3-A8GQ-06 1 11888676 11888676 C T CLCN6 Silent p.L372L 0.72 TCGA-D3-A8GQ-06 1 119474279 119474279 C T TBX15 Missense_Mutation p.D22N 0.62 deleterious(0) benign(0.063) TCGA-D3-A8GQ-06 1 119964551 119964551 G A HSD3B2 Missense_Mutation p.E143K 0.64 deleterious(0.01) benign(0.201) TCGA-D3-A8GQ-06 1 12779653 12779653 C T AADACL3 Silent p.I58I 0.67 TCGA-D3-A8GQ-06 1 12887231 12887231 G A PRAMEF11 Missense_Mutation p.S209F 0.52 tolerated(0.06) benign(0.009) TCGA-D3-A8GQ-06 1 13716807 13716807 G A PRAMEF17 Nonsense_Mutation p.W98* 0.71 TCGA-D3-A8GQ-06 1 14142943 14142943 C T PRDM2 Silent p.S1686S 0.55 TCGA-D3-A8GQ-06 1 144821980 144821980 C T NBPF9 Missense_Mutation p.S307L 0.18 tolerated(1) probably_damaging(0.975) TCGA-D3-A8GQ-06 1 144864156 144864156 G A PDE4DIP Missense_Mutation p.S1980F 0.10 deleterious(0) possibly_damaging(0.908) TCGA-D3-A8GQ-06 1 144864320 144864320 G A PDE4DIP Silent p.H1925H 0.26 TCGA-D3-A8GQ-06 1 144882472 144882472 C T PDE4DIP Missense_Mutation p.A1183T 0.29 tolerated(0.31) benign(0.011) TCGA-D3-A8GQ-06 1 146397420 146397420 G A NBPF12 Silent p.E79E 0.15 TCGA-D3-A8GQ-06 1 150444342 150444342 C T RPRD2 Missense_Mutation p.S973F 0.54 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-D3-A8GQ-06 1 151739678 151739678 C T OAZ3 Silent p.P24P 0.50 TCGA-D3-A8GQ-06 1 152128934 152128934 G A RPTN Missense_Mutation p.S214F 0.56 deleterious(0.02) possibly_damaging(0.609) TCGA-D3-A8GQ-06 1 152192008 152192008 G A HRNR Silent p.S699S 0.19 TCGA-D3-A8GQ-06 1 152284321 152284321 G A FLG Missense_Mutation p.S1014F 0.18 probably_damaging(0.991) TCGA-D3-A8GQ-06 1 152285054 152285054 G A FLG Missense_Mutation p.H770Y 0.21 possibly_damaging(0.573) TCGA-D3-A8GQ-06 1 152325490 152325490 C T FLG2 Missense_Mutation p.R1591K 0.21 possibly_damaging(0.766) TCGA-D3-A8GQ-06 1 152329972 152329972 G A FLG2 Missense_Mutation p.S97L 0.15 unknown(0) TCGA-D3-A8GQ-06 1 152538380 152538380 C T LCE3E 3'UTR 0.53 TCGA-D3-A8GQ-06 1 152538398 152538398 G A LCE3E 3'UTR 0.51 TCGA-D3-A8GQ-06 1 152857258 152857258 G A SMCP 3'UTR 0.58 TCGA-D3-A8GQ-06 1 152957709 152957709 G A SPRR1A Translation_Start_Site p.M1? 0.50 deleterious_low_confidence(0) benign(0) TCGA-D3-A8GQ-06 1 153277538 153277538 G A PGLYRP3 Silent p.F87F 0.58 TCGA-D3-A8GQ-06 1 153362653 153362653 C T S100A8 Missense_Mutation p.E70K 0.56 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 1 153665857 153665857 C T NPR1 Silent p.L1051L 0.58 TCGA-D3-A8GQ-06 1 155233831 155233831 T C CLK2 Silent p.R408R 0.55 TCGA-D3-A8GQ-06 1 155922455 155922455 G A ARHGEF2 Missense_Mutation p.R650C 0.20 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GQ-06 1 156450691 156450691 G A MEF2D Missense_Mutation p.P111S 0.17 deleterious(0.01) benign(0.024) TCGA-D3-A8GQ-06 1 156450692 156450692 G A MEF2D Silent p.S110S 0.17 TCGA-D3-A8GQ-06 1 156642546 156642546 C T NES Silent p.E478E 0.23 TCGA-D3-A8GQ-06 1 156821145 156821145 G A INSRR Missense_Mutation p.A389V 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GQ-06 1 157765940 157765940 G A FCRL1 Silent p.S413S 0.18 TCGA-D3-A8GQ-06 1 157801722 157801722 C T CD5L 3'UTR 0.64 TCGA-D3-A8GQ-06 1 157804447 157804447 C T CD5L Silent p.Q156Q 0.63 TCGA-D3-A8GQ-06 1 15820396 15820396 G A CASP9 Silent p.L383L 0.41 TCGA-D3-A8GQ-06 1 158260990 158260990 G A CD1C Missense_Mutation p.R43Q 0.49 tolerated(1) benign(0) TCGA-D3-A8GQ-06 1 158648227 158648227 G A SPTA1 Missense_Mutation p.A259V 0.12 tolerated(0.19) benign(0.098) TCGA-D3-A8GQ-06 1 1586910 1586910 G A CDK11B Missense_Mutation p.S47F 0.47 probably_damaging(0.955) TCGA-D3-A8GQ-06 1 158913669 158913669 C T PYHIN1 Silent p.I364I 0.12 TCGA-D3-A8GQ-06 1 159683258 159683258 G T CRP 3'UTR 0.18 TCGA-D3-A8GQ-06 1 160851893 160851893 C T ITLN1 Missense_Mutation p.E87K 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 1 161019437 161019437 T A ARHGAP30 Missense_Mutation p.D488V 0.11 deleterious(0.01) benign(0.282) TCGA-D3-A8GQ-06 1 161019438 161019438 C G ARHGAP30 Missense_Mutation p.D488H 0.09 deleterious(0) possibly_damaging(0.607) TCGA-D3-A8GQ-06 1 161019439 161019439 T C ARHGAP30 Silent p.A487A 0.06 TCGA-D3-A8GQ-06 1 162745469 162745469 C T DDR2 Silent p.I628I 0.53 TCGA-D3-A8GQ-06 1 16456805 16456805 G A EPHA2 Missense_Mutation p.P862L 0.63 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 1 16456806 16456806 G A EPHA2 Missense_Mutation p.P862S 0.62 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 1 167042670 167042670 G A GPA33 Silent p.S50S 0.52 TCGA-D3-A8GQ-06 1 167384849 167384849 C T POU2F1 Silent p.N701N 0.15 TCGA-D3-A8GQ-06 1 167815028 167815028 C T ADCY10 Missense_Mutation p.R927Q 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-D3-A8GQ-06 1 167823698 167823698 G A ADCY10 Missense_Mutation p.P734L 0.55 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 1 169388387 169388387 C T CCDC181 Missense_Mutation p.R360Q 0.55 tolerated(0.15) benign(0.182) TCGA-D3-A8GQ-06 1 169702119 169702119 C T SELE Missense_Mutation p.G20R 0.59 tolerated(0.78) benign(0.002) TCGA-D3-A8GQ-06 1 170007526 170007526 A C KIFAP3 Nonsense_Mutation p.L141* 0.19 TCGA-D3-A8GQ-06 1 170695382 170695382 G A PRRX1 Missense_Mutation p.A147T 0.21 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GQ-06 1 170705300 170705300 G A PRRX1 Silent p.Q237Q 0.16 TCGA-D3-A8GQ-06 1 171250015 171250015 C T FMO1 Nonsense_Mutation p.Q240* 0.60 TCGA-D3-A8GQ-06 1 17313066 17313066 G A ATP13A2 Silent p.P1099P 0.54 TCGA-D3-A8GQ-06 1 17313067 17313067 G A ATP13A2 Missense_Mutation p.P1099L 0.54 deleterious(0.02) probably_damaging(0.935) TCGA-D3-A8GQ-06 1 173494005 173494005 C T SLC9C2 Silent p.R809R 0.56 TCGA-D3-A8GQ-06 1 173826918 173826918 A C DARS2 3'UTR 0.41 TCGA-D3-A8GQ-06 1 175323527 175323527 C T TNR Missense_Mutation p.G1128R 0.12 tolerated(0.18) possibly_damaging(0.816) TCGA-D3-A8GQ-06 1 175375482 175375482 C T TNR Silent p.K123K 0.10 TCGA-D3-A8GQ-06 1 176564613 176564613 G A PAPPA2 Missense_Mutation p.D625N 0.53 tolerated(0.52) probably_damaging(0.981) TCGA-D3-A8GQ-06 1 176681049 176681049 G A PAPPA2 Missense_Mutation p.E1244K 0.28 tolerated(0.96) benign(0.001) TCGA-D3-A8GQ-06 1 176708838 176708838 A G PAPPA2 Missense_Mutation p.H1292R 0.54 tolerated(0.09) benign(0.003) TCGA-D3-A8GQ-06 1 176762760 176762760 C T PAPPA2 Silent p.I1695I 0.55 TCGA-D3-A8GQ-06 1 177250547 177250547 C T BRINP2 Silent p.L745L 0.51 TCGA-D3-A8GQ-06 1 179523772 179523772 G A AXDND1 3'UTR 0.52 TCGA-D3-A8GQ-06 1 180756974 180756974 C T XPR1 Silent p.I69I 0.16 TCGA-D3-A8GQ-06 1 181765849 181765849 G A CACNA1E Missense_Mutation p.R2085Q 0.42 deleterious(0.01) possibly_damaging(0.614) TCGA-D3-A8GQ-06 1 183155567 183155567 G A LAMC2 Splice_Site p.X27_splice 0.31 TCGA-D3-A8GQ-06 1 18703337 18703337 G A IGSF21 Missense_Mutation p.G382E 0.60 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GQ-06 1 18807965 18807965 G A KLHDC7A Missense_Mutation p.E164K 0.63 tolerated(0.25) benign(0.017) TCGA-D3-A8GQ-06 1 18960829 18960829 C T PAX7 Nonsense_Mutation p.Q40* 0.76 TCGA-D3-A8GQ-06 1 190067481 190067481 C T BRINP3 Silent p.R656R 0.56 TCGA-D3-A8GQ-06 1 19166276 19166276 G A TAS1R2 Silent p.F779F 0.54 TCGA-D3-A8GQ-06 1 19223624 19223624 G A ALDH4A1 Intron 0.42 TCGA-D3-A8GQ-06 1 19513086 19513086 G A UBR4 Silent p.S566S 0.55 TCGA-D3-A8GQ-06 1 196395052 196395052 G A KCNT2 Missense_Mutation p.P351S 0.51 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 1 196682875 196682875 C T CFH Silent p.S449S 0.55 TCGA-D3-A8GQ-06 1 196928097 196928097 G A CFHR2 Missense_Mutation p.G234S 0.54 deleterious(0.01) possibly_damaging(0.897) TCGA-D3-A8GQ-06 1 197008391 197008391 A G F13B 3'UTR 0.64 TCGA-D3-A8GQ-06 1 197298016 197298016 C T CRB1 Nonsense_Mutation p.Q179* 0.28 TCGA-D3-A8GQ-06 1 197390266 197390266 G A CRB1 Silent p.R436R 0.50 TCGA-D3-A8GQ-06 1 197390329 197390329 C T CRB1 Silent p.I457I 0.54 TCGA-D3-A8GQ-06 1 197390871 197390871 C T CRB1 Missense_Mutation p.S638L 0.18 deleterious(0.02) possibly_damaging(0.449) TCGA-D3-A8GQ-06 1 197890546 197890546 T A LHX9 Missense_Mutation p.C164S 0.61 deleterious(0.04) probably_damaging(0.951) TCGA-D3-A8GQ-06 1 200972864 200972864 G A KIF21B Silent p.F354F 0.57 TCGA-D3-A8GQ-06 1 201047201 201047201 G A CACNA1S Silent p.F475F 0.65 TCGA-D3-A8GQ-06 1 202407246 202407246 T - PPP1R12B Intron 0.35 TCGA-D3-A8GQ-06 1 204095004 204095004 G A SOX13 Silent p.V537V 0.65 TCGA-D3-A8GQ-06 1 204587084 204587084 G A LRRN2 Silent p.V679V 0.50 TCGA-D3-A8GQ-06 1 205052857 205052857 G A TMEM81 Nonsense_Mutation p.Q198* 0.18 TCGA-D3-A8GQ-06 1 207075361 207075361 T A IL24 Missense_Mutation p.S162T 0.20 tolerated(0.39) benign(0.003) TCGA-D3-A8GQ-06 1 207697189 207697189 C G CR1 Missense_Mutation p.P241A 0.10 deleterious(0) possibly_damaging(0.486) TCGA-D3-A8GQ-06 1 207780600 207780600 C T CR1 Nonsense_Mutation p.R1939* 0.14 TCGA-D3-A8GQ-06 1 209768385 209768385 C T CAMK1G Silent p.I19I 0.26 TCGA-D3-A8GQ-06 1 211842506 211842506 G A NEK2 Nonsense_Mutation p.Q312* 0.23 TCGA-D3-A8GQ-06 1 216251477 216251477 G A USH2A Silent p.I1842I 0.23 TCGA-D3-A8GQ-06 1 218607684 218607684 G A TGFB2 Silent p.R244R 0.43 TCGA-D3-A8GQ-06 1 220091667 220091667 G A SLC30A10 Silent p.F296F 0.21 TCGA-D3-A8GQ-06 1 221875850 221875850 G A DUSP10 Silent p.F451F 0.49 TCGA-D3-A8GQ-06 1 222716972 222716972 G A HHIPL2 Missense_Mutation p.S294L 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 1 222892329 222892329 A G BROX Missense_Mutation p.E55G 0.55 tolerated(0.15) benign(0.043) TCGA-D3-A8GQ-06 1 223283720 223283720 C T TLR5 3'UTR 0.20 TCGA-D3-A8GQ-06 1 228481286 228481286 G A OBSCN Silent p.K4129K 0.35 TCGA-D3-A8GQ-06 1 228481287 228481287 G A OBSCN Missense_Mutation p.E4130K 0.32 probably_damaging(0.996) TCGA-D3-A8GQ-06 1 229678096 229678096 G T ABCB10 Missense_Mutation p.A315D 0.07 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GQ-06 1 230916320 230916320 C T CAPN9 Silent p.F449F 0.25 TCGA-D3-A8GQ-06 1 233313625 233313625 G A PCNXL2 Silent p.L1066L 0.23 TCGA-D3-A8GQ-06 1 233807133 233807133 C T KCNK1 Nonsense_Mutation p.Q290* 0.22 TCGA-D3-A8GQ-06 1 236925950 236925950 A G ACTN2 3'UTR 0.44 TCGA-D3-A8GQ-06 1 240371905 240371905 C T FMN2 Missense_Mutation p.P1265S 0.41 probably_damaging(0.95) TCGA-D3-A8GQ-06 1 240492391 240492391 G A FMN2 Missense_Mutation p.E1411K 0.58 probably_damaging(0.999) TCGA-D3-A8GQ-06 1 240966266 240966266 C T RGS7 Missense_Mutation p.D433N 0.18 deleterious(0) probably_damaging(0.989) TCGA-D3-A8GQ-06 1 246091306 246091306 G A SMYD3 Missense_Mutation p.P210L 0.38 deleterious(0) probably_damaging(0.909) TCGA-D3-A8GQ-06 1 246498692 246498692 G A SMYD3 Missense_Mutation p.L105F 0.51 tolerated(0.1) probably_damaging(0.946) TCGA-D3-A8GQ-06 1 247729256 247729256 A G GCSAML Missense_Mutation p.N55D 0.14 tolerated(0.11) benign(0.001) TCGA-D3-A8GQ-06 1 247751868 247751868 C T OR2G2 Silent p.L69L 0.24 TCGA-D3-A8GQ-06 1 247876010 247876010 G A OR6F1 Silent p.G16G 0.39 TCGA-D3-A8GQ-06 1 248004409 248004409 G A OR11L1 Missense_Mutation p.P264S 0.16 tolerated(0.41) benign(0.006) TCGA-D3-A8GQ-06 1 248031355 248031355 G A TRIM58 Silent p.R287R 0.38 TCGA-D3-A8GQ-06 1 248039219 248039219 C T TRIM58 Missense_Mutation p.P297S 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 1 248039289 248039289 G A TRIM58 Missense_Mutation p.R320K 0.39 tolerated(0.35) benign(0.033) TCGA-D3-A8GQ-06 1 248059112 248059112 C T OR2W3 Missense_Mutation p.T75I 0.20 deleterious(0) possibly_damaging(0.883) TCGA-D3-A8GQ-06 1 248084653 248084653 C T OR2T8 Missense_Mutation p.L112F 0.08 deleterious(0) benign(0.32) TCGA-D3-A8GQ-06 1 248084830 248084830 G A OR2T8 Missense_Mutation p.E171K 0.19 tolerated(0.13) benign(0.344) TCGA-D3-A8GQ-06 1 248343365 248343365 C T OR2M2 Silent p.F26F 0.24 TCGA-D3-A8GQ-06 1 248436606 248436606 C T OR2T33 Missense_Mutation p.E171K 0.27 tolerated(0.11) possibly_damaging(0.477) TCGA-D3-A8GQ-06 1 248436783 248436783 G A OR2T33 Missense_Mutation p.L112F 0.22 deleterious(0.01) benign(0.32) TCGA-D3-A8GQ-06 1 248525014 248525014 C T OR2T4 Silent p.F44F 0.32 TCGA-D3-A8GQ-06 1 248789853 248789853 C T OR2T11 Missense_Mutation p.E193K 0.27 tolerated(0.1) benign(0.013) TCGA-D3-A8GQ-06 1 27700943 27700943 C T FCN3 Splice_Site p.X31_splice 0.59 TCGA-D3-A8GQ-06 1 27720530 27720530 C T GPR3 Silent p.F76F 0.70 TCGA-D3-A8GQ-06 1 32557606 32557606 C T TMEM39B Silent p.F307F 0.58 TCGA-D3-A8GQ-06 1 33236516 33236516 C T KIAA1522 Missense_Mutation p.S579L 0.58 deleterious(0) unknown(0) TCGA-D3-A8GQ-06 1 33354871 33354871 C T HPCA Silent p.I124I 0.73 TCGA-D3-A8GQ-06 1 34066523 34066523 G A CSMD2 Silent p.V2268V 0.65 TCGA-D3-A8GQ-06 1 34191043 34191043 G A CSMD2 Missense_Mutation p.P828S 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 1 35334402 35334402 G A DLGAP3 Silent p.T763T 0.50 TCGA-D3-A8GQ-06 1 36226417 36226417 T G CLSPN Missense_Mutation p.T369P 0.53 tolerated(0.07) benign(0.192) TCGA-D3-A8GQ-06 1 37319230 37319230 C T GRIK3 Missense_Mutation p.D400N 0.70 tolerated(0.2) benign(0.021) TCGA-D3-A8GQ-06 1 41540963 41540963 G A SCMH1 Silent p.P292P 0.61 TCGA-D3-A8GQ-06 1 43778100 43778100 G A TIE1 Nonsense_Mutation p.W585* 0.61 TCGA-D3-A8GQ-06 1 45228226 45228226 G A KIF2C Missense_Mutation p.E623K 0.04 tolerated(0.19) benign(0.019) TCGA-D3-A8GQ-06 1 46032603 46032603 G A AKR1A1 Silent p.E89E 0.62 TCGA-D3-A8GQ-06 1 47279163 47279163 G A CYP4B1 Missense_Mutation p.E169K 0.45 deleterious(0.03) benign(0.199) TCGA-D3-A8GQ-06 1 47402438 47402438 C T CYP4A11 Silent p.G136G 0.19 TCGA-D3-A8GQ-06 1 47550613 47550613 C T CYP4Z1 Silent p.I245I 0.40 TCGA-D3-A8GQ-06 1 51439793 51439793 G A CDKN2C Missense_Mutation p.E120K 0.79 tolerated(0.52) benign(0.032) TCGA-D3-A8GQ-06 1 51934185 51934185 G A EPS15 Missense_Mutation p.S90L 0.63 deleterious(0) benign(0.045) TCGA-D3-A8GQ-06 1 62677133 62677133 G A L1TD1 3'UTR 0.50 TCGA-D3-A8GQ-06 1 62739581 62739581 G A KANK4 Missense_Mutation p.H399Y 0.56 tolerated(1) benign(0.029) TCGA-D3-A8GQ-06 1 71477932 71477932 G A PTGER3 Intron 0.56 TCGA-D3-A8GQ-06 1 71873168 71873168 G A NEGR1 Silent p.F342F 0.55 TCGA-D3-A8GQ-06 1 74957895 74957895 C T TNNI3K Missense_Mutation p.R867C 0.64 tolerated_low_confidence(0.07) possibly_damaging(0.897) TCGA-D3-A8GQ-06 1 75065511 75065511 C T C1orf173 Missense_Mutation p.D532N 0.51 deleterious(0) probably_damaging(0.957) TCGA-D3-A8GQ-06 1 78546528 78546528 G A GIPC2 Missense_Mutation p.G137D 0.63 deleterious(0.01) possibly_damaging(0.651) TCGA-D3-A8GQ-06 1 79357229 79357229 G A ELTD1 Silent p.L664L 0.47 TCGA-D3-A8GQ-06 1 84386821 84386821 C T TTLL7 Missense_Mutation p.R438Q 0.49 deleterious(0.05) probably_damaging(0.992) TCGA-D3-A8GQ-06 1 85124042 85124042 C T SSX2IP Nonsense_Mutation p.W346* 0.61 TCGA-D3-A8GQ-06 1 97547987 97547987 C T DPYD Missense_Mutation p.G936S 0.59 tolerated(0.25) benign(0.027) TCGA-D3-A8GQ-06 20 13029687 13029687 G A SPTLC3 Missense_Mutation p.G71E 0.36 tolerated(0.27) possibly_damaging(0.856) TCGA-D3-A8GQ-06 20 15480430 15480430 G A MACROD2 Missense_Mutation p.E195K 0.38 tolerated(0.07) probably_damaging(0.989) TCGA-D3-A8GQ-06 20 1551680 1551680 G A SIRPB1 Silent p.T285T 0.28 TCGA-D3-A8GQ-06 20 16316609 16316609 G A KIF16B Nonsense_Mutation p.R410* 0.30 TCGA-D3-A8GQ-06 20 23066685 23066685 C T CD93 Missense_Mutation p.A49T 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 20 2779105 2779105 A G CPXM1 Missense_Mutation p.L140P 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 20 29623158 29623158 G A FRG1B 5'UTR 0.04 TCGA-D3-A8GQ-06 20 3016344 3016344 C - PTPRA Frame_Shift_Del p.T679Pfs*31 0.25 TCGA-D3-A8GQ-06 20 3102272 3102272 G C UBOX5 Missense_Mutation p.P338R 0.29 tolerated(0.06) benign(0.064) TCGA-D3-A8GQ-06 20 31024380 31024380 C T ASXL1 Missense_Mutation p.R1289W 0.22 tolerated(0.08) possibly_damaging(0.724) TCGA-D3-A8GQ-06 20 31967319 31967319 G A CDK5RAP1 Missense_Mutation p.P352L 0.30 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 20 34022378 34022378 C T GDF5 Missense_Mutation p.D279N 0.29 deleterious(0.01) probably_damaging(0.945) TCGA-D3-A8GQ-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.42 TCGA-D3-A8GQ-06 20 34611567 34611567 G A CNBD2 Missense_Mutation p.R434Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 20 34810273 34810273 G A EPB41L1 Missense_Mutation p.R865K 0.45 tolerated(1) probably_damaging(0.996) TCGA-D3-A8GQ-06 20 40827922 40827922 C T PTPRT Missense_Mutation p.D817N 0.46 deleterious(0.02) benign(0.075) TCGA-D3-A8GQ-06 20 42158998 42158998 C T L3MBTL1 Silent p.S355S 0.23 TCGA-D3-A8GQ-06 20 42788290 42788290 G A JPH2 Silent p.I379I 0.16 TCGA-D3-A8GQ-06 20 43247100 43247100 C T PKIG 3'UTR 0.55 TCGA-D3-A8GQ-06 20 44641139 44641139 G A MMP9 Silent p.E416E 0.09 TCGA-D3-A8GQ-06 20 45358044 45358044 C T SLC2A10 Silent p.L488L 0.25 TCGA-D3-A8GQ-06 20 45801399 45801399 G A EYA2 Missense_Mutation p.G361E 0.48 deleterious(0.03) possibly_damaging(0.871) TCGA-D3-A8GQ-06 20 4837629 4837629 C G SLC23A2 Missense_Mutation p.A648P 0.37 tolerated_low_confidence(0.12) benign(0.312) TCGA-D3-A8GQ-06 20 52570119 52570119 T C BCAS1 Missense_Mutation p.K511R 0.23 deleterious(0.04) probably_damaging(0.955) TCGA-D3-A8GQ-06 20 5294652 5294652 C T PROKR2 Missense_Mutation p.E122K 0.29 tolerated(0.68) benign(0.003) TCGA-D3-A8GQ-06 20 57288488 57288488 C T NPEPL1 Silent p.I338I 0.30 TCGA-D3-A8GQ-06 20 58587745 58587745 C T CDH26 Missense_Mutation p.P820L 0.23 tolerated(0.23) benign(0.002) TCGA-D3-A8GQ-06 20 5903878 5903878 G A CHGB Missense_Mutation p.R363K 0.32 tolerated(0.37) benign(0.173) TCGA-D3-A8GQ-06 20 61525874 61525874 G A DIDO1 Silent p.V821V 0.16 TCGA-D3-A8GQ-06 20 62073846 62073846 G A KCNQ2 Silent p.L243L 0.24 TCGA-D3-A8GQ-06 20 62221775 62221775 G A GMEB2 Silent p.A420A 0.43 TCGA-D3-A8GQ-06 20 62729732 62729732 C T OPRL1 Silent p.I231I 0.19 TCGA-D3-A8GQ-06 20 8130987 8130987 G A PLCB1 Missense_Mutation p.G49E 0.22 deleterious(0) benign(0.05) TCGA-D3-A8GQ-06 20 8745935 8745935 G A PLCB1 Missense_Mutation p.E954K 0.33 tolerated(0.21) benign(0.005) TCGA-D3-A8GQ-06 20 9353732 9353732 T C PLCB4 Missense_Mutation p.L242S 0.26 deleterious(0) possibly_damaging(0.51) TCGA-D3-A8GQ-06 20 9440281 9440281 G A PLCB4 Splice_Site p.X1013_splice 0.32 TCGA-D3-A8GQ-06 20 9449249 9449249 A G PLCB4 Missense_Mutation p.K1082E 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 20 9520207 9520207 T G PAK7 Silent p.R688R 0.33 TCGA-D3-A8GQ-06 20 9538306 9538306 C T PAK7 Silent p.V564V 0.32 TCGA-D3-A8GQ-06 20 9546559 9546559 C T PAK7 Missense_Mutation p.R488Q 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 21 10907033 10907033 G A TPTE Silent p.L510L 0.33 TCGA-D3-A8GQ-06 21 10934955 10934955 G A TPTE Nonsense_Mutation p.R280* 0.07 TCGA-D3-A8GQ-06 21 10998228 10998228 T C TPTE RNA 0.10 TCGA-D3-A8GQ-06 21 11038949 11038949 G A BAGE2 RNA 0.04 TCGA-D3-A8GQ-06 21 11097599 11097599 C T BAGE2 RNA 0.04 TCGA-D3-A8GQ-06 21 15537711 15537711 C T LIPI Missense_Mutation p.G266E 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 21 19653490 19653490 C T TMPRSS15 Missense_Mutation p.M845I 0.28 tolerated(0.32) benign(0.001) TCGA-D3-A8GQ-06 21 31538769 31538769 C T CLDN17 Missense_Mutation p.R56Q 0.22 tolerated(0.09) benign(0.039) TCGA-D3-A8GQ-06 21 32624446 32624446 G A TIAM1 Silent p.T341T 0.24 TCGA-D3-A8GQ-06 21 33686968 33686968 G A MRAP 3'Flank 0.28 TCGA-D3-A8GQ-06 21 33949152 33949152 G A TCP10L Missense_Mutation p.R194C 0.27 tolerated(0.19) benign(0.007) TCGA-D3-A8GQ-06 21 35237506 35237506 G A ITSN1 Missense_Mutation p.M1314I 0.30 tolerated(0.14) benign(0.322) TCGA-D3-A8GQ-06 21 37572752 37572752 C T DOPEY2 Silent p.I148I 0.25 TCGA-D3-A8GQ-06 21 41465739 41465739 C T DSCAM Silent p.R1253R 0.28 TCGA-D3-A8GQ-06 21 41559877 41559877 G A DSCAM Missense_Mutation p.S864F 0.22 tolerated(0.23) probably_damaging(0.992) TCGA-D3-A8GQ-06 21 41711303 41711303 A C DSCAM Missense_Mutation p.V417G 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GQ-06 21 42843851 42843851 G A TMPRSS2 Silent p.F356F 0.33 TCGA-D3-A8GQ-06 21 43994925 43994925 C T SLC37A1 Intron 0.22 TCGA-D3-A8GQ-06 21 45213210 45213210 C T RRP1 Silent p.F95F 0.26 TCGA-D3-A8GQ-06 21 46032718 46032718 C T KRTAP10-8 Missense_Mutation p.S234F 0.31 deleterious(0.01) unknown(0) TCGA-D3-A8GQ-06 21 47987678 47987678 C T DIP2A 3'UTR 0.23 TCGA-D3-A8GQ-06 22 17662792 17662792 C T CECR1 Missense_Mutation p.D454N 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 22 17688089 17688089 G A CECR1 Silent p.F138F 0.41 TCGA-D3-A8GQ-06 22 18644599 18644599 C T USP18 Silent p.V99V 0.15 TCGA-D3-A8GQ-06 22 19799865 19799865 G A GNB1L Silent p.I120I 0.16 TCGA-D3-A8GQ-06 22 23063468 23063468 G A IGLV3-19 Missense_Mutation p.G59R 0.25 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GQ-06 22 24034817 24034817 G A RGL4 Intron 0.27 TCGA-D3-A8GQ-06 22 26291128 26291128 G A MYO18B Missense_Mutation p.E1517K 0.37 deleterious(0) possibly_damaging(0.701) TCGA-D3-A8GQ-06 22 26299688 26299688 G A MYO18B Missense_Mutation p.E1680K 0.16 tolerated(0.14) benign(0.022) TCGA-D3-A8GQ-06 22 29834834 29834834 T C RFPL1 Silent p.F18F 0.29 TCGA-D3-A8GQ-06 22 29837520 29837520 C T RFPL1 Intron 0.37 TCGA-D3-A8GQ-06 22 31302436 31302436 C T OSBP2 3'UTR 0.35 TCGA-D3-A8GQ-06 22 37319377 37319377 C T CSF2RB Silent p.L56L 0.52 TCGA-D3-A8GQ-06 22 38134725 38134725 C T TRIOBP Missense_Mutation p.S1728L 0.11 deleterious_low_confidence(0.03) benign(0.41) TCGA-D3-A8GQ-06 22 40574087 40574087 C T TNRC6B 5'UTR 0.28 TCGA-D3-A8GQ-06 22 41257114 41257114 C T DNAJB7 Silent p.K295K 0.47 TCGA-D3-A8GQ-06 22 42264785 42264793 CAGCAGGTC - SREBF2 In_Frame_Del p.Q237_V239del 0.53 TCGA-D3-A8GQ-06 22 43015857 43015857 G A CYB5R3 Silent p.P309P 0.31 TCGA-D3-A8GQ-06 22 45691475 45691475 G A UPK3A Missense_Mutation p.D247N 0.48 tolerated(0.08) benign(0.087) TCGA-D3-A8GQ-06 22 50278557 50278557 C T ZBED4 Missense_Mutation p.S416F 0.29 tolerated(0.06) possibly_damaging(0.472) TCGA-D3-A8GQ-06 2 100623772 100623772 C T AFF3 Missense_Mutation p.D134N 0.31 tolerated(0.2) benign(0.176) TCGA-D3-A8GQ-06 2 103039688 103039688 C T IL18RAP 5'UTR 0.21 TCGA-D3-A8GQ-06 2 103040505 103040505 C T IL18RAP Missense_Mutation p.P102L 0.46 tolerated(0.13) benign(0.01) TCGA-D3-A8GQ-06 2 105858315 105858315 G A GPR45 5'UTR 0.17 TCGA-D3-A8GQ-06 2 107041004 107041004 C T RGPD3 Missense_Mutation p.G1140D 0.40 deleterious(0.01) benign(0.431) TCGA-D3-A8GQ-06 2 107041679 107041679 G A RGPD3 Missense_Mutation p.S915F 0.38 deleterious(0) benign(0.288) TCGA-D3-A8GQ-06 2 107460191 107460191 G A ST6GAL2 Silent p.P81P 0.49 TCGA-D3-A8GQ-06 2 109397855 109397855 C T RANBP2 Silent p.I2910I 0.40 TCGA-D3-A8GQ-06 2 112758778 112758778 G A MERTK Silent p.G535G 0.14 TCGA-D3-A8GQ-06 2 113788649 113788649 G A IL36B Missense_Mutation p.P33S 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 2 121746863 121746863 G A GLI2 Missense_Mutation p.G1125R 0.20 tolerated(0.06) possibly_damaging(0.532) TCGA-D3-A8GQ-06 2 121748067 121748067 C T GLI2 Missense_Mutation p.S1526L 0.23 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GQ-06 2 125555872 125555872 C T CNTNAP5 Silent p.F1063F 0.27 TCGA-D3-A8GQ-06 2 12863641 12863641 C T TRIB2 Missense_Mutation p.L176F 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 130832122 130832122 G A POTEF Missense_Mutation p.H975Y 0.48 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-D3-A8GQ-06 2 130897828 130897828 C T CCDC74B Missense_Mutation p.R267Q 0.27 tolerated(0.08) possibly_damaging(0.742) TCGA-D3-A8GQ-06 2 131520888 131520888 G A AMER3 Missense_Mutation p.D415N 0.47 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 2 131521526 131521526 C T AMER3 Silent p.S627S 0.17 TCGA-D3-A8GQ-06 2 132021951 132021951 C T POTEE Missense_Mutation p.H975Y 0.23 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D3-A8GQ-06 2 132480214 132480214 G A C2orf27A 5'UTR 0.50 TCGA-D3-A8GQ-06 2 133403771 133403771 C T LYPD1 Silent p.G91G 0.14 TCGA-D3-A8GQ-06 2 135710226 135710226 T C CCNT2 Missense_Mutation p.F240S 0.14 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 2 135745180 135745180 G A MAP3K19 Missense_Mutation p.S421L 0.43 tolerated(0.06) benign(0.037) TCGA-D3-A8GQ-06 2 135756520 135756520 G A MAP3K19 Missense_Mutation p.S121F 0.44 deleterious(0.01) possibly_damaging(0.907) TCGA-D3-A8GQ-06 2 135884196 135884196 C T RAB3GAP1 Nonsense_Mutation p.R315* 0.46 TCGA-D3-A8GQ-06 2 135965045 135965045 G A ZRANB3 Missense_Mutation p.L990F 0.46 tolerated(0.08) benign(0.12) TCGA-D3-A8GQ-06 2 136033275 136033275 A G ZRANB3 Silent p.L339L 0.23 TCGA-D3-A8GQ-06 2 136033276 136033276 A G ZRANB3 Missense_Mutation p.L339P 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GQ-06 2 136873177 136873177 G A CXCR4 Silent p.F111F 0.28 TCGA-D3-A8GQ-06 2 149227868 149227868 C T MBD5 Nonsense_Mutation p.Q786* 0.45 TCGA-D3-A8GQ-06 2 152135416 152135416 G A NMI Missense_Mutation p.S89L 0.21 tolerated(0.39) benign(0.036) TCGA-D3-A8GQ-06 2 153405540 153405540 C T FMNL2 Silent p.F96F 0.19 TCGA-D3-A8GQ-06 2 160901392 160901392 G A PLA2R1 Missense_Mutation p.S129F 0.50 deleterious(0.02) benign(0.045) TCGA-D3-A8GQ-06 2 162877172 162877172 G A DPP4 Silent p.T365T 0.14 TCGA-D3-A8GQ-06 2 162890147 162890147 G A DPP4 Missense_Mutation p.P264L 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 163302627 163302627 G A KCNH7 Silent p.P485P 0.21 TCGA-D3-A8GQ-06 2 165947636 165947636 T C SCN3A Missense_Mutation p.N1676S 0.51 tolerated(0.15) benign(0.172) TCGA-D3-A8GQ-06 2 166026969 166026969 C T SCN3A Silent p.R118R 0.42 TCGA-D3-A8GQ-06 2 166165763 166165763 C T SCN2A Missense_Mutation p.P232S 0.42 tolerated(0.08) benign(0.249) TCGA-D3-A8GQ-06 2 166848506 166848506 G A SCN1A Missense_Mutation p.S1760F 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 166852571 166852571 C T SCN1A Missense_Mutation p.M1511I 0.22 deleterious(0.01) benign(0.049) TCGA-D3-A8GQ-06 2 166852592 166852592 C T SCN1A Silent p.Q1504Q 0.19 TCGA-D3-A8GQ-06 2 166895938 166895938 G A SCN1A Nonsense_Mutation p.R862* 0.43 TCGA-D3-A8GQ-06 2 167085452 167085452 G A SCN9A Missense_Mutation p.P1308S 0.26 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 168102811 168102811 A G XIRP2 Missense_Mutation p.K1637E 0.13 possibly_damaging(0.879) TCGA-D3-A8GQ-06 2 169780243 169780243 G A ABCB11 Silent p.I1285I 0.21 TCGA-D3-A8GQ-06 2 169938239 169938239 G A DHRS9 Missense_Mutation p.D50N 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-D3-A8GQ-06 2 170092480 170092480 A C LRP2 Missense_Mutation p.I1597S 0.54 possibly_damaging(0.875) TCGA-D3-A8GQ-06 2 173855595 173855595 G A RAPGEF4 Missense_Mutation p.E478K 0.20 deleterious(0) possibly_damaging(0.556) TCGA-D3-A8GQ-06 2 179404472 179404472 C T TTN Missense_Mutation p.D32774N 0.35 TCGA-D3-A8GQ-06 2 179407922 179407922 G A TTN Silent p.L32260L 0.22 TCGA-D3-A8GQ-06 2 179411620 179411620 C T TTN Missense_Mutation p.R31512K 0.49 TCGA-D3-A8GQ-06 2 179418090 179418090 C T TTN Missense_Mutation p.R29846K 0.19 TCGA-D3-A8GQ-06 2 179431674 179431674 G A TTN Silent p.V26395V 0.25 TCGA-D3-A8GQ-06 2 179437634 179437634 C T TTN Missense_Mutation p.E24409K 0.27 TCGA-D3-A8GQ-06 2 179439702 179439702 G A TTN Silent p.I23719I 0.55 TCGA-D3-A8GQ-06 2 179468788 179468788 C A TTN Missense_Mutation p.G18209V 0.41 TCGA-D3-A8GQ-06 2 179554304 179554304 C T TTN Missense_Mutation p.G10622E 0.37 TCGA-D3-A8GQ-06 2 179585251 179585251 C T TTN Silent p.K7746K 0.39 TCGA-D3-A8GQ-06 2 179587872 179587872 C T TTN Missense_Mutation p.E7288K 0.45 TCGA-D3-A8GQ-06 2 179604422 179604422 G A TTN Missense_Mutation p.S4513L 0.47 TCGA-D3-A8GQ-06 2 179604682 179604682 C T TTN Silent p.E4426E 0.49 TCGA-D3-A8GQ-06 2 179606140 179606140 G A TTN Silent p.F3940F 0.47 TCGA-D3-A8GQ-06 2 179611207 179611207 G A TTN Intron 0.44 TCGA-D3-A8GQ-06 2 179611551 179611551 C T TTN Intron 0.18 TCGA-D3-A8GQ-06 2 179614249 179614249 G A TTN Intron 0.42 TCGA-D3-A8GQ-06 2 179635359 179635359 T A TTN Missense_Mutation p.E2720D 0.43 TCGA-D3-A8GQ-06 2 179641580 179641580 C T TTN Missense_Mutation p.E1671K 0.54 TCGA-D3-A8GQ-06 2 183640096 183640096 C T DNAJC10 Silent p.A773A 0.21 TCGA-D3-A8GQ-06 2 185800791 185800791 C T ZNF804A Missense_Mutation p.S223F 0.37 deleterious(0.01) possibly_damaging(0.603) TCGA-D3-A8GQ-06 2 185802456 185802456 C T ZNF804A Missense_Mutation p.S778F 0.49 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GQ-06 2 188210898 188210898 C T CALCRL 3'UTR 0.55 TCGA-D3-A8GQ-06 2 189855741 189855741 A G COL3A1 Silent p.G270G 0.26 TCGA-D3-A8GQ-06 2 189875513 189875513 G A COL3A1 Missense_Mutation p.G1384E 0.24 unknown(0) TCGA-D3-A8GQ-06 2 191863029 191863029 C T STAT1 Missense_Mutation p.E183K 0.41 tolerated(0.35) benign(0.108) TCGA-D3-A8GQ-06 2 1926548 1926548 C T MYT1L Silent p.R331R 0.45 TCGA-D3-A8GQ-06 2 192863864 192863864 C T TMEFF2 Missense_Mutation p.D203N 0.22 tolerated(0.63) probably_damaging(0.911) TCGA-D3-A8GQ-06 2 196651856 196651856 G A DNAH7 Missense_Mutation p.H3586Y 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 196720618 196720618 G A DNAH7 Missense_Mutation p.L2838F 0.43 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 196822128 196822128 C T DNAH7 Missense_Mutation p.E979K 0.61 tolerated(0.08) possibly_damaging(0.752) TCGA-D3-A8GQ-06 2 20402626 20402626 C T SDC1 Missense_Mutation p.M278I 0.30 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 2 206480196 206480196 C T PARD3B Missense_Mutation p.P1031S 0.15 tolerated(0.23) benign(0.06) TCGA-D3-A8GQ-06 2 207569599 207569599 C G DYTN Missense_Mutation p.V151L 0.24 tolerated(0.23) benign(0.055) TCGA-D3-A8GQ-06 2 210658517 210658517 G A UNC80 Missense_Mutation p.R291Q 0.21 benign(0.028) TCGA-D3-A8GQ-06 2 21231153 21231153 C T APOB Missense_Mutation p.E2863K 0.42 benign(0.339) TCGA-D3-A8GQ-06 2 216930117 216930117 G A PECR Silent p.S114S 0.45 TCGA-D3-A8GQ-06 2 219885882 219885882 G A CCDC108 Missense_Mutation p.S1084F 0.17 deleterious(0) possibly_damaging(0.906) TCGA-D3-A8GQ-06 2 219920328 219920328 C T IHH Silent p.T279T 0.23 TCGA-D3-A8GQ-06 2 220039598 220039598 C T CNPPD1 Missense_Mutation p.G138R 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 220115802 220115802 C T TUBA4A Missense_Mutation p.E207K 0.40 deleterious_low_confidence(0.01) benign(0.172) TCGA-D3-A8GQ-06 2 220172277 220172277 C T PTPRN Missense_Mutation p.G57S 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 2 220290434 220290434 G A DES Silent p.V446V 0.50 TCGA-D3-A8GQ-06 2 226447269 226447269 C T NYAP2 Missense_Mutation p.S379L 0.52 deleterious(0.01) benign(0.142) TCGA-D3-A8GQ-06 2 227942699 227942699 C T COL4A4 Missense_Mutation p.G633E 0.24 probably_damaging(0.993) TCGA-D3-A8GQ-06 2 227964382 227964382 G A COL4A4 Silent p.H351H 0.65 TCGA-D3-A8GQ-06 2 228771035 228771035 C T DAW1 Missense_Mutation p.S280F 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 2 229890767 229890767 C T PID1 Missense_Mutation p.E110K 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GQ-06 2 230840999 230840999 C T FBXO36 Nonsense_Mutation p.R47* 0.40 TCGA-D3-A8GQ-06 2 230902244 230902244 C T SLC16A14 Nonsense_Mutation p.W462* 0.35 TCGA-D3-A8GQ-06 2 233407202 233407202 G A CHRNG Nonsense_Mutation p.W192* 0.20 TCGA-D3-A8GQ-06 2 233839568 233839568 C T NGEF Silent p.K11K 0.46 TCGA-D3-A8GQ-06 2 234581090 234581090 G T UGT1A9 Missense_Mutation p.R170S 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-D3-A8GQ-06 2 234602338 234602338 G A UGT1A6 Missense_Mutation p.E230K 0.49 tolerated(0.22) possibly_damaging(0.517) TCGA-D3-A8GQ-06 2 234622468 234622468 G A UGT1A5 Silent p.G277G 0.56 TCGA-D3-A8GQ-06 2 234669393 234669393 C T UGT1A8 Intron 0.21 TCGA-D3-A8GQ-06 2 238896604 238896604 G A UBE2F Splice_Site p.X40_splice 0.44 TCGA-D3-A8GQ-06 2 239170983 239170983 G A PER2 Silent p.L386L 0.40 TCGA-D3-A8GQ-06 2 241515980 241515980 C A RNPEPL1 Silent p.A282A 0.42 TCGA-D3-A8GQ-06 2 242572649 242572649 G A THAP4 Missense_Mutation p.T308I 0.29 tolerated_low_confidence(0.09) possibly_damaging(0.601) TCGA-D3-A8GQ-06 2 242814684 242814684 T C CXXC11 Missense_Mutation p.F326S 0.10 tolerated(1) benign(0.004) TCGA-D3-A8GQ-06 2 27157482 27157482 C T DPYSL5 Missense_Mutation p.A276V 0.29 deleterious(0.05) benign(0.158) TCGA-D3-A8GQ-06 2 29294467 29294467 G A C2orf71 Silent p.S887S 0.18 TCGA-D3-A8GQ-06 2 29296596 29296596 C T C2orf71 Missense_Mutation p.E178K 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-D3-A8GQ-06 2 31155017 31155017 G A GALNT14 Silent p.I330I 0.24 TCGA-D3-A8GQ-06 2 31604554 31604554 G A XDH Silent p.S359S 0.22 TCGA-D3-A8GQ-06 2 32694632 32694632 C T BIRC6 Silent p.V2099V 0.24 TCGA-D3-A8GQ-06 2 36970397 36970397 C A VIT Missense_Mutation p.H91Q 0.38 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 2 38301704 38301704 G A CYP1B1 Silent p.F276F 0.25 TCGA-D3-A8GQ-06 2 39085815 39085815 G A DHX57 Silent p.F525F 0.19 TCGA-D3-A8GQ-06 2 40656692 40656692 G A SLC8A1 Silent p.P243P 0.21 TCGA-D3-A8GQ-06 2 43514062 43514062 G A THADA Missense_Mutation p.P1717S 0.36 tolerated(0.14) benign(0.423) TCGA-D3-A8GQ-06 2 44104710 44104710 G A ABCG8 Nonsense_Mutation p.W589* 0.21 TCGA-D3-A8GQ-06 2 46739641 46739641 G A ATP6V1E2 Silent p.I70I 0.18 TCGA-D3-A8GQ-06 2 49190325 49190325 G A FSHR Silent p.I545I 0.57 TCGA-D3-A8GQ-06 2 49216168 49216168 G A FSHR Missense_Mutation p.H158Y 0.53 deleterious(0.04) benign(0.022) TCGA-D3-A8GQ-06 2 50779825 50779825 G A NRXN1 Silent p.L593L 0.19 TCGA-D3-A8GQ-06 2 63660908 63660908 G A WDPCP Missense_Mutation p.L266F 0.39 deleterious(0.02) probably_damaging(0.987) TCGA-D3-A8GQ-06 2 63660909 63660909 G A WDPCP Silent p.L265L 0.38 TCGA-D3-A8GQ-06 2 71043613 71043613 G A CLEC4F Silent p.S300S 0.20 TCGA-D3-A8GQ-06 2 71825697 71825697 C T DYSF Missense_Mutation p.P1193L 0.53 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 73316195 73316195 T G RAB11FIP5 Missense_Mutation p.K227T 0.46 deleterious(0) possibly_damaging(0.464) TCGA-D3-A8GQ-06 2 73675649 73675649 C A ALMS1 Silent p.S664S 0.44 TCGA-D3-A8GQ-06 2 73680997 73680997 C T ALMS1 Missense_Mutation p.P2447L 0.17 probably_damaging(0.995) TCGA-D3-A8GQ-06 2 74531741 74531741 C T SLC4A5 Missense_Mutation p.G49E 0.24 tolerated_low_confidence(0.82) benign(0.002) TCGA-D3-A8GQ-06 2 77746210 77746210 C T LRRTM4 Missense_Mutation p.G262E 0.20 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 2 79363173 79363173 G A REG1P RNA 0.29 TCGA-D3-A8GQ-06 2 80101300 80101300 C T CTNNA2 Silent p.L228L 0.20 TCGA-D3-A8GQ-06 2 85866471 85866471 C T USP39 Missense_Mutation p.P414L 0.20 deleterious(0) probably_damaging(0.944) TCGA-D3-A8GQ-06 2 85890932 85890932 C T SFTPB Silent p.V249V 0.53 TCGA-D3-A8GQ-06 2 88874650 88874650 G A EIF2AK3 Missense_Mutation p.S784F 0.20 deleterious(0.03) benign(0.211) TCGA-D3-A8GQ-06 2 89157182 89157182 G A IGKC Missense_Mutation p.P6S 0.40 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 2 89185105 89185105 G A IGKV4-1 Silent p.Q6Q 0.41 TCGA-D3-A8GQ-06 2 89513063 89513063 G A IGKV1-27 Missense_Mutation p.P66S 0.40 deleterious(0.01) possibly_damaging(0.886) TCGA-D3-A8GQ-06 2 90259972 90259972 G A IGKV1D-8 Nonsense_Mutation p.W25* 0.48 TCGA-D3-A8GQ-06 2 95481711 95481711 C T ANKRD20A8P RNA 0.22 TCGA-D3-A8GQ-06 2 97217452 97217452 C T ARID5A Missense_Mutation p.P396L 0.22 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 2 97271176 97271176 G A KANSL3 Missense_Mutation p.P605L 0.40 tolerated_low_confidence(0.09) probably_damaging(0.914) TCGA-D3-A8GQ-06 2 98736122 98736122 G A VWA3B Silent p.L146L 0.49 TCGA-D3-A8GQ-06 2 98986465 98986465 C T CNGA3 Silent p.S9S 0.42 TCGA-D3-A8GQ-06 2 99012368 99012368 G A CNGA3 Silent p.T245T 0.15 TCGA-D3-A8GQ-06 3 100014041 100014041 C T TBC1D23 Silent p.I237I 0.41 TCGA-D3-A8GQ-06 3 100581185 100581185 C T ABI3BP Missense_Mutation p.E377K 0.20 tolerated(0.18) benign(0.292) TCGA-D3-A8GQ-06 3 100594376 100594376 C T ABI3BP Missense_Mutation p.A272T 0.20 tolerated(1) benign(0) TCGA-D3-A8GQ-06 3 102157434 102157434 C T ZPLD1 Missense_Mutation p.P51S 0.50 deleterious(0.01) probably_damaging(0.967) TCGA-D3-A8GQ-06 3 105270997 105270997 C T ALCAM Missense_Mutation p.P506L 0.48 tolerated(0.05) possibly_damaging(0.536) TCGA-D3-A8GQ-06 3 105400259 105400259 C T CBLB Intron 0.54 TCGA-D3-A8GQ-06 3 107096932 107096932 C T CCDC54 Silent p.I166I 0.53 TCGA-D3-A8GQ-06 3 108174619 108174619 C T MYH15 Silent p.E762E 0.17 TCGA-D3-A8GQ-06 3 108174633 108174633 G A MYH15 Missense_Mutation p.L758F 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A8GQ-06 3 108474555 108474555 G T RETNLB 3'UTR 0.21 TCGA-D3-A8GQ-06 3 108677746 108677746 A T MORC1 3'UTR 0.53 TCGA-D3-A8GQ-06 3 109028108 109028108 G A DPPA2 Missense_Mutation p.P84L 0.20 deleterious(0) benign(0.272) TCGA-D3-A8GQ-06 3 109031515 109031515 C T DPPA2 Missense_Mutation p.D20N 0.22 deleterious(0.04) possibly_damaging(0.515) TCGA-D3-A8GQ-06 3 111264119 111264119 G A CD96 Silent p.E96E 0.47 TCGA-D3-A8GQ-06 3 111766763 111766763 C T TMPRSS7 Missense_Mutation p.S177F 0.29 tolerated(0.62) probably_damaging(0.986) TCGA-D3-A8GQ-06 3 118935044 118935044 G A B4GALT4 Intron 0.20 TCGA-D3-A8GQ-06 3 120833854 120833854 G A STXBP5L Missense_Mutation p.E185K 0.20 deleterious(0) possibly_damaging(0.593) TCGA-D3-A8GQ-06 3 121712201 121712201 G A ILDR1 Silent p.H465H 0.50 TCGA-D3-A8GQ-06 3 121836915 121836915 G A CD86 Missense_Mutation p.E290K 0.46 tolerated(0.77) benign(0.003) TCGA-D3-A8GQ-06 3 122646833 122646833 C T SEMA5B Silent p.R272R 0.11 TCGA-D3-A8GQ-06 3 123419433 123419433 C T MYLK Missense_Mutation p.G961E 0.49 deleterious(0.01) benign(0) TCGA-D3-A8GQ-06 3 123419461 123419461 C T MYLK Missense_Mutation p.D952N 0.23 deleterious(0.02) benign(0.196) TCGA-D3-A8GQ-06 3 123699380 123699380 C T ROPN1 5'UTR 0.56 TCGA-D3-A8GQ-06 3 124174206 124174206 G A KALRN Silent p.E1243E 0.38 TCGA-D3-A8GQ-06 3 12421252 12421252 G A PPARG Silent p.G44G 0.46 TCGA-D3-A8GQ-06 3 124351360 124351360 C T KALRN Missense_Mutation p.S60F 0.33 deleterious(0.04) benign(0.021) TCGA-D3-A8GQ-06 3 124748160 124748160 G A HEG1 Silent p.L163L 0.41 TCGA-D3-A8GQ-06 3 126915578 126915578 C T C3orf56 Missense_Mutation p.A17V 0.21 tolerated_low_confidence(0.12) possibly_damaging(0.682) TCGA-D3-A8GQ-06 3 128350856 128350856 G A RPN1 Missense_Mutation p.P260S 0.23 tolerated(1) benign(0.032) TCGA-D3-A8GQ-06 3 129140448 129140448 G A EFCAB12 Missense_Mutation p.P83L 0.22 tolerated(0.19) benign(0.207) TCGA-D3-A8GQ-06 3 129147333 129147333 G A EFCAB12 5'UTR 0.14 TCGA-D3-A8GQ-06 3 130189774 130189774 C T COL6A5 Missense_Mutation p.P2513S 0.30 deleterious(0.04) benign(0.168) TCGA-D3-A8GQ-06 3 130311386 130311386 G A COL6A6 Missense_Mutation p.G1425E 0.14 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GQ-06 3 130718492 130718492 T C ATP2C1 Missense_Mutation p.L907P 0.16 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 3 133098760 133098760 A T TMEM108 Missense_Mutation p.N69Y 0.51 tolerated_low_confidence(0.46) benign(0.009) TCGA-D3-A8GQ-06 3 133363031 133363031 A C TOPBP1 Missense_Mutation p.L561V 0.07 tolerated(0.54) benign(0.001) TCGA-D3-A8GQ-06 3 133538496 133538496 C T SRPRB Silent p.F234F 0.51 TCGA-D3-A8GQ-06 3 13860824 13860824 C T WNT7A Missense_Mutation p.E223K 0.37 tolerated(0.22) benign(0.063) TCGA-D3-A8GQ-06 3 140397060 140397060 C T TRIM42 5'UTR 0.18 TCGA-D3-A8GQ-06 3 141497194 141497194 C T GRK7 Missense_Mutation p.S23L 0.44 tolerated(0.33) benign(0.001) TCGA-D3-A8GQ-06 3 142539852 142539852 C T PCOLCE2 Missense_Mutation p.D329N 0.18 tolerated(0.41) benign(0.005) TCGA-D3-A8GQ-06 3 142561768 142561768 G A PCOLCE2 Nonsense_Mutation p.Q191* 0.49 TCGA-D3-A8GQ-06 3 14555296 14555296 C G GRIP2 RNA 0.40 TCGA-D3-A8GQ-06 3 14555297 14555297 C T GRIP2 RNA 0.42 TCGA-D3-A8GQ-06 3 147108823 147108823 G A ZIC4 Missense_Mutation p.S350L 0.49 deleterious(0.03) probably_damaging(0.921) TCGA-D3-A8GQ-06 3 148903083 148903083 C T CP Nonsense_Mutation p.W743* 0.21 TCGA-D3-A8GQ-06 3 149216599 149216599 G A TM4SF4 Silent p.L164L 0.52 TCGA-D3-A8GQ-06 3 14952368 14952368 G A FGD5 Missense_Mutation p.E1113K 0.26 tolerated(0.05) probably_damaging(0.998) TCGA-D3-A8GQ-06 3 150419960 150419960 G A FAM194A Missense_Mutation p.P137S 0.18 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GQ-06 3 15116337 15116337 G A ZFYVE20 Missense_Mutation p.P436L 0.36 tolerated(0.08) benign(0.001) TCGA-D3-A8GQ-06 3 151163901 151163901 G A IGSF10 Missense_Mutation p.P1290S 0.39 tolerated(0.05) benign(0.041) TCGA-D3-A8GQ-06 3 154146582 154146582 A G GPR149 Missense_Mutation p.F275L 0.16 tolerated(0.36) benign(0.006) TCGA-D3-A8GQ-06 3 154889929 154889929 G A MME Silent p.K668K 0.27 TCGA-D3-A8GQ-06 3 155199907 155199907 G A PLCH1 Missense_Mutation p.S1311F 0.41 deleterious_low_confidence(0.01) benign(0.019) TCGA-D3-A8GQ-06 3 155232592 155232592 C T PLCH1 Missense_Mutation p.D506N 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 3 155571134 155571134 G A SLC33A1 Missense_Mutation p.S218L 0.46 deleterious(0) possibly_damaging(0.782) TCGA-D3-A8GQ-06 3 156742597 156742597 G A LEKR1 Missense_Mutation p.E418K 0.48 tolerated(0.57) benign(0) TCGA-D3-A8GQ-06 3 157817694 157817694 G A SHOX2 Silent p.V243V 0.27 TCGA-D3-A8GQ-06 3 164741375 164741375 C T SI Missense_Mutation p.D1028N 0.27 tolerated(0.54) benign(0.027) TCGA-D3-A8GQ-06 3 164781325 164781325 T A SI Missense_Mutation p.N271I 0.20 tolerated(0.4) benign(0.415) TCGA-D3-A8GQ-06 3 167035335 167035335 G A ZBBX Missense_Mutation p.P345L 0.25 tolerated(0.05) benign(0.178) TCGA-D3-A8GQ-06 3 167293760 167293760 C T WDR49 Silent p.V144V 0.19 TCGA-D3-A8GQ-06 3 17056253 17056253 C T PLCL2 Silent p.L830L 0.51 TCGA-D3-A8GQ-06 3 170856057 170856057 T A TNIK Missense_Mutation p.R511W 0.54 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 3 172835182 172835182 G A SPATA16 Missense_Mutation p.H114Y 0.25 deleterious(0.01) benign(0.009) TCGA-D3-A8GQ-06 3 175165019 175165019 G A NAALADL2 Missense_Mutation p.E365K 0.33 tolerated(0.23) benign(0.011) TCGA-D3-A8GQ-06 3 178984485 178984485 C T KCNMB3 Missense_Mutation p.S5N 0.38 tolerated(0.05) benign(0.014) TCGA-D3-A8GQ-06 3 183209942 183209942 C T KLHL6 Missense_Mutation p.E547K 0.56 tolerated(1) probably_damaging(0.977) TCGA-D3-A8GQ-06 3 183756291 183756291 C T HTR3D Silent p.P338P 0.43 TCGA-D3-A8GQ-06 3 185212517 185212517 G A TMEM41A Silent p.F156F 0.24 TCGA-D3-A8GQ-06 3 186504002 186504002 G A EIF4A2 Silent p.L189L 0.20 TCGA-D3-A8GQ-06 3 186571974 186571974 T A ADIPOQ Silent p.G72G 0.16 TCGA-D3-A8GQ-06 3 186571975 186571975 C T ADIPOQ Missense_Mutation p.L73F 0.17 tolerated(0.06) benign(0.078) TCGA-D3-A8GQ-06 3 188327570 188327570 C T LPP Missense_Mutation p.P351S 0.17 tolerated(0.16) benign(0.001) TCGA-D3-A8GQ-06 3 190338196 190338196 C T IL1RAP Missense_Mutation p.H224Y 0.48 deleterious(0) benign(0.179) TCGA-D3-A8GQ-06 3 193025132 193025132 C T ATP13A5 Missense_Mutation p.G851E 0.50 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 3 193039627 193039627 C T ATP13A5 Splice_Site p.X587_splice 0.45 TCGA-D3-A8GQ-06 3 19432080 19432080 T G KCNH8 Missense_Mutation p.L307V 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-D3-A8GQ-06 3 19492850 19492850 G A KCNH8 Silent p.S593S 0.45 TCGA-D3-A8GQ-06 3 195488387 195488387 G A MUC4 Missense_Mutation p.P4861L 0.22 possibly_damaging(0.908) TCGA-D3-A8GQ-06 3 19575452 19575452 C T KCNH8 Missense_Mutation p.S1062F 0.45 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 3 196018243 196018243 G C TCTEX1D2 Missense_Mutation p.D128E 0.18 tolerated(0.22) benign(0.248) TCGA-D3-A8GQ-06 3 196771588 196771588 C T DLG1 Missense_Mutation p.G896E 0.37 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GQ-06 3 197640650 197640650 G A IQCG Intron 0.49 TCGA-D3-A8GQ-06 3 21462752 21462752 C T ZNF385D Missense_Mutation p.G381E 0.29 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 3 21706390 21706390 G A ZNF385D Silent p.P51P 0.48 TCGA-D3-A8GQ-06 3 24138834 24138834 C T LINC00691 RNA 0.47 TCGA-D3-A8GQ-06 3 26751288 26751288 C T LRRC3B Missense_Mutation p.S42F 0.42 deleterious(0.01) benign(0.005) TCGA-D3-A8GQ-06 3 26751648 26751648 C T LRRC3B Missense_Mutation p.S162F 0.49 deleterious(0.02) benign(0.031) TCGA-D3-A8GQ-06 3 28304779 28304779 C T CMC1 Intron 0.23 TCGA-D3-A8GQ-06 3 32932970 32932970 G A TRIM71 Silent p.E758E 0.35 TCGA-D3-A8GQ-06 3 33668495 33668495 A C CLASP2 Missense_Mutation p.D341E 0.23 tolerated(1) probably_damaging(0.998) TCGA-D3-A8GQ-06 3 35731597 35731597 G A ARPP21 Missense_Mutation p.M170I 0.14 deleterious(0) benign(0.045) TCGA-D3-A8GQ-06 3 36763055 36763055 G A DCLK3 Silent p.T516T 0.22 TCGA-D3-A8GQ-06 3 36874052 36874052 G A TRANK1 Missense_Mutation p.S2297F 0.37 deleterious(0.02) probably_damaging(0.95) TCGA-D3-A8GQ-06 3 36893308 36893308 G A TRANK1 Missense_Mutation p.P1553S 0.27 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GQ-06 3 37323589 37323589 C T GOLGA4 Silent p.S123S 0.24 TCGA-D3-A8GQ-06 3 38751107 38751107 C T SCN10A Splice_Site p.X1382_splice 0.20 TCGA-D3-A8GQ-06 3 38770160 38770160 G A SCN10A Missense_Mutation p.S838F 0.49 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 3 38936346 38936346 C T SCN11A Missense_Mutation p.R838Q 0.42 deleterious(0.05) probably_damaging(1) TCGA-D3-A8GQ-06 3 39125709 39125709 A G WDR48 Missense_Mutation p.M413V 0.43 tolerated(0.21) benign(0.021) TCGA-D3-A8GQ-06 3 39307278 39307278 G A CX3CR1 Silent p.F273F 0.21 TCGA-D3-A8GQ-06 3 40529641 40529641 C T ZNF619 Missense_Mutation p.S587L 0.24 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-D3-A8GQ-06 3 42727282 42727282 T A KLHL40 Missense_Mutation p.F58I 0.49 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 3 42750564 42750564 C T CCDC13 Missense_Mutation p.E686K 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-D3-A8GQ-06 3 46542076 46542076 G A RTP3 Missense_Mutation p.G129E 0.42 tolerated(1) benign(0.002) TCGA-D3-A8GQ-06 3 4687310 4687310 C T ITPR1 Silent p.L251L 0.22 TCGA-D3-A8GQ-06 3 47047085 47047085 C T NBEAL2 Missense_Mutation p.P2223S 0.38 tolerated(0.09) probably_damaging(0.913) TCGA-D3-A8GQ-06 3 47618441 47618441 A C CSPG5 Missense_Mutation p.C359G 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 3 48465133 48465133 A G PLXNB1 Silent p.A296A 0.54 TCGA-D3-A8GQ-06 3 48604456 48604456 C T COL7A1 Missense_Mutation p.G2704R 0.14 probably_damaging(0.99) TCGA-D3-A8GQ-06 3 48626364 48626364 C T COL7A1 Silent p.R793R 0.44 TCGA-D3-A8GQ-06 3 49362434 49362434 G A USP4 Missense_Mutation p.P176S 0.17 tolerated(0.16) benign(0.064) TCGA-D3-A8GQ-06 3 49662469 49662469 C T BSN Missense_Mutation p.P96S 0.22 unknown(0) TCGA-D3-A8GQ-06 3 49932704 49932704 G A MST1R Missense_Mutation p.S1056F 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 3 50214261 50214261 G A SEMA3F Missense_Mutation p.D204N 0.47 tolerated(0.16) probably_damaging(1) TCGA-D3-A8GQ-06 3 51251654 51251654 G A DOCK3 Missense_Mutation p.G410R 0.16 deleterious(0) probably_damaging(0.935) TCGA-D3-A8GQ-06 3 51312531 51312531 C T DOCK3 Missense_Mutation p.P857L 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GQ-06 3 53326351 53326351 G A DCP1A Silent p.A377A 0.49 TCGA-D3-A8GQ-06 3 53844229 53844229 C T CACNA1D Silent p.S2052S 0.21 TCGA-D3-A8GQ-06 3 54905576 54905576 G A CACNA2D3 Missense_Mutation p.G546E 0.16 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GQ-06 3 54914862 54914862 C T CACNA2D3 Silent p.F628F 0.45 TCGA-D3-A8GQ-06 3 54952618 54952618 C T LRTM1 Missense_Mutation p.M302I 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GQ-06 3 56044546 56044546 G - ERC2 Frame_Shift_Del p.F618Sfs*8 0.27 TCGA-D3-A8GQ-06 3 62153671 62153671 C T PTPRG Silent p.T289T 0.29 TCGA-D3-A8GQ-06 3 62636743 62636743 G A CADPS Missense_Mutation p.P328S 0.46 deleterious(0) possibly_damaging(0.641) TCGA-D3-A8GQ-06 3 69169187 69169187 C T LMOD3 Missense_Mutation p.E107K 0.31 tolerated(0.29) benign(0.026) TCGA-D3-A8GQ-06 3 77617532 77617532 C T ROBO2 Missense_Mutation p.R656C 0.46 deleterious(0.01) probably_damaging(0.911) TCGA-D3-A8GQ-06 3 77666970 77666970 G A ROBO2 Intron 0.25 TCGA-D3-A8GQ-06 3 89259196 89259196 G A EPHA3 Missense_Mutation p.G114R 0.18 tolerated(0.08) probably_damaging(1) TCGA-D3-A8GQ-06 3 93605189 93605189 G A PROS1 Silent p.L438L 0.19 TCGA-D3-A8GQ-06 3 93755574 93755574 G A ARL13B Missense_Mutation p.R222Q 0.18 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 3 96945212 96945212 G A EPHA6 Missense_Mutation p.E407K 0.18 tolerated(0.11) possibly_damaging(0.604) TCGA-D3-A8GQ-06 3 9776057 9776057 C T BRPF1 Missense_Mutation p.P78L 0.44 deleterious(0) benign(0.167) TCGA-D3-A8GQ-06 3 97806398 97806398 A T OR5AC2 Missense_Mutation p.I128L 0.19 deleterious(0) possibly_damaging(0.512) TCGA-D3-A8GQ-06 3 98073009 98073009 C T OR5K4 Silent p.L104L 0.40 TCGA-D3-A8GQ-06 3 99881196 99881196 C T CMSS1 Missense_Mutation p.P92L 0.38 deleterious(0) possibly_damaging(0.861) TCGA-D3-A8GQ-06 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.27 probably_damaging(1) TCGA-D3-A8GQ-06 4 101439160 101439160 G A EMCN 5'UTR 0.23 TCGA-D3-A8GQ-06 4 101439161 101439161 G A EMCN 5'UTR 0.23 TCGA-D3-A8GQ-06 4 104068650 104068650 A G CENPE Silent p.L1333L 0.31 TCGA-D3-A8GQ-06 4 104070022 104070022 G A CENPE Silent p.S1274S 0.38 TCGA-D3-A8GQ-06 4 104510748 104510748 G A TACR3 3'UTR 0.21 TCGA-D3-A8GQ-06 4 110890175 110890175 G A EGF Missense_Mutation p.D542N 0.43 tolerated(0.09) probably_damaging(0.919) TCGA-D3-A8GQ-06 4 111397957 111397957 C T ENPEP Silent p.T129T 0.29 TCGA-D3-A8GQ-06 4 111412215 111412215 G A ENPEP Nonsense_Mutation p.W271* 0.38 TCGA-D3-A8GQ-06 4 111482759 111482759 C T ENPEP 3'UTR 0.21 TCGA-D3-A8GQ-06 4 115760697 115760697 C T NDST4 Missense_Mutation p.R708Q 0.26 deleterious(0.04) probably_damaging(0.97) TCGA-D3-A8GQ-06 4 115998230 115998230 C T NDST4 5'UTR 0.23 TCGA-D3-A8GQ-06 4 119952307 119952307 C T SYNPO2 Missense_Mutation p.P793S 0.38 tolerated(0.19) benign(0.17) TCGA-D3-A8GQ-06 4 121958051 121958051 C T NDNF Missense_Mutation p.G359R 0.31 deleterious(0.05) benign(0.381) TCGA-D3-A8GQ-06 4 121958675 121958675 G A NDNF Missense_Mutation p.L151F 0.26 tolerated(0.11) benign(0.027) TCGA-D3-A8GQ-06 4 122250678 122250678 C T QRFPR Missense_Mutation p.G363R 0.31 tolerated(0.15) benign(0.002) TCGA-D3-A8GQ-06 4 123302227 123302227 G A ADAD1 Missense_Mutation p.E85K 0.23 tolerated(0.15) benign(0.222) TCGA-D3-A8GQ-06 4 126336245 126336245 G A FAT4 Missense_Mutation p.D2043N 0.24 probably_damaging(0.999) TCGA-D3-A8GQ-06 4 126336818 126336818 C T FAT4 Nonsense_Mutation p.R2234* 0.31 TCGA-D3-A8GQ-06 4 126367696 126367696 C T FAT4 Missense_Mutation p.P2481L 0.32 benign(0.232) TCGA-D3-A8GQ-06 4 126373317 126373317 C T FAT4 Missense_Mutation p.R3716C 0.32 benign(0.01) TCGA-D3-A8GQ-06 4 128565128 128565128 G T INTU Missense_Mutation p.G200V 0.24 tolerated(0.07) benign(0.36) TCGA-D3-A8GQ-06 4 1359973 1359973 C T UVSSA Intron 0.17 TCGA-D3-A8GQ-06 4 13601689 13601689 G A BOD1L1 Missense_Mutation p.P2279S 0.15 possibly_damaging(0.548) TCGA-D3-A8GQ-06 4 148575573 148575573 G A PRMT10 Missense_Mutation p.S492L 0.30 tolerated(0.54) benign(0.001) TCGA-D3-A8GQ-06 4 153564285 153564285 C A TMEM154 Nonsense_Mutation p.E145* 0.24 TCGA-D3-A8GQ-06 4 154514950 154514950 G A KIAA0922 Splice_Site p.X641_splice 0.22 TCGA-D3-A8GQ-06 4 155506675 155506675 G A FGA Intron 0.22 TCGA-D3-A8GQ-06 4 155507152 155507152 C T FGA Missense_Mutation p.E477K 0.30 tolerated(0.09) benign(0.268) TCGA-D3-A8GQ-06 4 156784818 156784818 G A ASIC5 Silent p.I43I 0.29 TCGA-D3-A8GQ-06 4 158073979 158073979 C T GLRB Silent p.L338L 0.31 TCGA-D3-A8GQ-06 4 158262546 158262546 G A GRIA2 Missense_Mutation p.D659N 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 4 158281188 158281188 G A GRIA2 Silent p.T728T 0.21 TCGA-D3-A8GQ-06 4 162697127 162697127 C T FSTL5 Missense_Mutation p.G170D 0.37 tolerated(0.58) benign(0) TCGA-D3-A8GQ-06 4 162697128 162697128 C T FSTL5 Missense_Mutation p.G170S 0.36 tolerated(0.66) benign(0) TCGA-D3-A8GQ-06 4 162841791 162841791 C T FSTL5 Silent p.Q58Q 0.44 TCGA-D3-A8GQ-06 4 164271737 164271737 G A NPY5R Silent p.L104L 0.32 TCGA-D3-A8GQ-06 4 16504433 16504433 G A LDB2 Silent p.L319L 0.28 TCGA-D3-A8GQ-06 4 166996143 166996143 G A TLL1 Missense_Mutation p.D768N 0.28 tolerated(0.13) benign(0.285) TCGA-D3-A8GQ-06 4 167656173 167656173 C T SPOCK3 Missense_Mutation p.D404N 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-D3-A8GQ-06 4 169433261 169433261 T G PALLD Missense_Mutation p.S202R 0.39 deleterious(0) possibly_damaging(0.786) TCGA-D3-A8GQ-06 4 175709999 175709999 C T GLRA3 Missense_Mutation p.G56E 0.21 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GQ-06 4 175897277 175897277 G A ADAM29 Missense_Mutation p.E201K 0.20 deleterious(0) possibly_damaging(0.773) TCGA-D3-A8GQ-06 4 175898920 175898920 C T ADAM29 Silent p.S748S 0.30 TCGA-D3-A8GQ-06 4 177041022 177041022 C T WDR17 Silent p.I128I 0.33 TCGA-D3-A8GQ-06 4 177609069 177609069 C T VEGFC Silent p.A239A 0.35 TCGA-D3-A8GQ-06 4 177713342 177713342 C T VEGFC Missense_Mutation p.E42K 0.26 tolerated(0.18) benign(0.234) TCGA-D3-A8GQ-06 4 183603099 183603099 G A TENM3 Missense_Mutation p.G656E 0.28 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GQ-06 4 187005214 187005214 G A TLR3 Missense_Mutation p.D792N 0.32 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GQ-06 4 189061694 189061694 G A TRIML1 Missense_Mutation p.E141K 0.27 deleterious(0.02) benign(0.345) TCGA-D3-A8GQ-06 4 25792139 25792139 C T SEL1L3 Missense_Mutation p.E672K 0.26 deleterious(0) possibly_damaging(0.752) TCGA-D3-A8GQ-06 4 26483569 26483569 C T CCKAR Nonsense_Mutation p.W326* 0.21 TCGA-D3-A8GQ-06 4 36179582 36179582 G A ARAP2 Missense_Mutation p.S575L 0.36 tolerated(0.22) benign(0.002) TCGA-D3-A8GQ-06 4 39318567 39318567 G A RFC1 Missense_Mutation p.P391S 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-D3-A8GQ-06 4 40123119 40123119 A T N4BP2 Missense_Mutation p.T1130S 0.21 tolerated(0.48) possibly_damaging(0.824) TCGA-D3-A8GQ-06 4 40123120 40123120 C T N4BP2 Missense_Mutation p.T1130I 0.21 tolerated(0.09) benign(0.059) TCGA-D3-A8GQ-06 4 41016106 41016106 G A APBB2 Missense_Mutation p.A110V 0.26 tolerated(0.19) probably_damaging(0.999) TCGA-D3-A8GQ-06 4 41748154 41748154 G A PHOX2B Silent p.T205T 0.21 TCGA-D3-A8GQ-06 4 46099233 46099233 G A GABRG1 Missense_Mutation p.R80C 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 4 47560095 47560095 C T ATP10D Missense_Mutation p.R747W 0.25 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 4 47938625 47938625 C T CNGA1 Missense_Mutation p.R698Q 0.33 tolerated(0.35) benign(0.022) TCGA-D3-A8GQ-06 4 48032136 48032136 G A NIPAL1 Splice_Site p.X105_splice 0.27 TCGA-D3-A8GQ-06 4 56465319 56465319 G A NMU Silent p.F173F 0.29 TCGA-D3-A8GQ-06 4 6042402 6042402 G A JAKMIP1 Silent p.L713L 0.30 TCGA-D3-A8GQ-06 4 647888 647888 C T PDE6B Missense_Mutation p.S291F 0.33 deleterious(0) benign(0.041) TCGA-D3-A8GQ-06 4 65275046 65275046 G A TECRL Silent p.L8L 0.35 TCGA-D3-A8GQ-06 4 65275108 65275108 G A TECRL 5'UTR 0.28 TCGA-D3-A8GQ-06 4 68500230 68500230 G A UBA6 Missense_Mutation p.P617S 0.31 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 4 68566879 68566879 G A UBA6 5'UTR 0.43 TCGA-D3-A8GQ-06 4 68566880 68566880 G A UBA6 5'UTR 0.43 TCGA-D3-A8GQ-06 4 69512738 69512738 G A UGT2B15 3'UTR 0.20 TCGA-D3-A8GQ-06 4 69528851 69528851 C T UGT2B15 Missense_Mutation p.E294K 0.31 deleterious(0.01) possibly_damaging(0.891) TCGA-D3-A8GQ-06 4 69528852 69528852 C T UGT2B15 Missense_Mutation p.M293I 0.30 tolerated(0.17) benign(0.044) TCGA-D3-A8GQ-06 4 69688099 69688099 C A UGT2B10 Silent p.A326A 0.27 TCGA-D3-A8GQ-06 4 7026839 7026839 C T TBC1D14 Silent p.I622I 0.31 TCGA-D3-A8GQ-06 4 70355288 70355288 C T UGT2B4 Missense_Mutation p.E291K 0.25 deleterious(0.01) benign(0.226) TCGA-D3-A8GQ-06 4 70455265 70455265 C T UGT2A1 Missense_Mutation p.G636E 0.23 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 4 71232663 71232663 C T SMR3A Silent p.F119F 0.22 TCGA-D3-A8GQ-06 4 73013372 73013372 G A NPFFR2 Missense_Mutation p.S471N 0.28 tolerated(1) benign(0.005) TCGA-D3-A8GQ-06 4 75937815 75937815 C T PARM1 Missense_Mutation p.S75F 0.30 deleterious(0) possibly_damaging(0.824) TCGA-D3-A8GQ-06 4 79238650 79238650 G A FRAS1 Missense_Mutation p.G650R 0.20 benign(0.064) TCGA-D3-A8GQ-06 4 79394669 79394669 C T FRAS1 Silent p.L2534L 0.32 TCGA-D3-A8GQ-06 4 8038007 8038007 C T ABLIM2 Missense_Mutation p.E306K 0.30 deleterious(0.01) benign(0.297) TCGA-D3-A8GQ-06 4 80828538 80828538 G A ANTXR2 3'UTR 0.35 TCGA-D3-A8GQ-06 4 83763610 83763610 G A SEC31A Missense_Mutation p.P884L 0.41 deleterious(0) benign(0.017) TCGA-D3-A8GQ-06 4 83840034 83840034 A T THAP9 Missense_Mutation p.K890I 0.29 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-D3-A8GQ-06 4 85658486 85658486 A T WDFY3 Missense_Mutation p.V2203D 0.25 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GQ-06 4 88533843 88533843 G A DSPP Missense_Mutation p.D169N 0.18 benign(0.268) TCGA-D3-A8GQ-06 4 89318007 89318007 C T HERC6 Missense_Mutation p.H298Y 0.25 deleterious(0) probably_damaging(0.98) TCGA-D3-A8GQ-06 4 94376920 94376920 G A GRID2 Silent p.R551R 0.27 TCGA-D3-A8GQ-06 4 9836507 9836507 G A SLC2A9 Nonsense_Mutation p.Q473* 0.24 TCGA-D3-A8GQ-06 5 101815943 101815943 G A SLCO6A1 Missense_Mutation p.S185L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 5 101834520 101834520 C T SLCO6A1 Missense_Mutation p.G10E 0.31 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 5 102364759 102364759 C T PAM Missense_Mutation p.S972F 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GQ-06 5 112876696 112876696 G A YTHDC2 Nonsense_Mutation p.W414* 0.32 TCGA-D3-A8GQ-06 5 114477072 114477072 C T TRIM36 Splice_Site p.X258_splice 0.31 TCGA-D3-A8GQ-06 5 115346499 115346499 G A AQPEP Missense_Mutation p.E719K 0.25 tolerated(0.05) probably_damaging(0.936) TCGA-D3-A8GQ-06 5 121488507 121488507 C T ZNF474 Silent p.S274S 0.36 TCGA-D3-A8GQ-06 5 122364499 122364499 C T PPIC Missense_Mutation p.G99D 0.34 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 5 1240726 1240726 C T SLC6A18 Missense_Mutation p.S309F 0.17 deleterious(0) probably_damaging(0.988) TCGA-D3-A8GQ-06 5 125912869 125912869 G C ALDH7A1 Silent p.P184P 0.36 TCGA-D3-A8GQ-06 5 127673698 127673698 C T FBN2 Missense_Mutation p.D1197N 0.29 deleterious(0.04) benign(0.281) TCGA-D3-A8GQ-06 5 127674692 127674692 C T FBN2 Silent p.P1135P 0.27 TCGA-D3-A8GQ-06 5 131396432 131396432 A G IL3 Silent p.Q11Q 0.32 TCGA-D3-A8GQ-06 5 131409492 131409492 G A CSF2 5'UTR 0.21 TCGA-D3-A8GQ-06 5 131944329 131944329 C T RAD50 Missense_Mutation p.P914L 0.23 deleterious(0) possibly_damaging(0.89) TCGA-D3-A8GQ-06 5 135692300 135692300 A C TRPC7 Missense_Mutation p.F259C 0.25 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 5 135692590 135692590 G A TRPC7 Silent p.S162S 0.25 TCGA-D3-A8GQ-06 5 137488211 137488211 C T BRD8 Missense_Mutation p.R939K 0.32 tolerated_low_confidence(0.35) benign(0) TCGA-D3-A8GQ-06 5 13751351 13751351 C T DNAH5 Missense_Mutation p.E3683K 0.28 possibly_damaging(0.621) TCGA-D3-A8GQ-06 5 137515354 137515354 G A KIF20A 5'UTR 0.17 TCGA-D3-A8GQ-06 5 137515355 137515355 G A KIF20A 5'UTR 0.17 TCGA-D3-A8GQ-06 5 13754425 13754425 C T DNAH5 Missense_Mutation p.R3481Q 0.25 possibly_damaging(0.553) TCGA-D3-A8GQ-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.30 benign(0) TCGA-D3-A8GQ-06 5 13770916 13770916 G A DNAH5 Nonsense_Mutation p.Q3183* 0.26 TCGA-D3-A8GQ-06 5 13868073 13868073 C T DNAH5 Missense_Mutation p.G1288E 0.29 benign(0.004) TCGA-D3-A8GQ-06 5 139192910 139192910 G A PSD2 Missense_Mutation p.E130K 0.30 deleterious(0.03) possibly_damaging(0.526) TCGA-D3-A8GQ-06 5 140048973 140048973 G A WDR55 Missense_Mutation p.E296K 0.35 tolerated(0.19) benign(0.219) TCGA-D3-A8GQ-06 5 140167832 140167832 G A PCDHA1 Missense_Mutation p.D653N 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 5 140187042 140187042 C T PCDHA4 Silent p.I90I 0.36 TCGA-D3-A8GQ-06 5 140188660 140188660 G A PCDHA4 Missense_Mutation p.E630K 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.779) TCGA-D3-A8GQ-06 5 140201780 140201780 C T PCDHA5 Silent p.F140F 0.36 TCGA-D3-A8GQ-06 5 140203180 140203180 C T PCDHA5 Missense_Mutation p.S607L 0.26 tolerated_low_confidence(0.05) possibly_damaging(0.511) TCGA-D3-A8GQ-06 5 140229005 140229005 G A PCDHA9 Missense_Mutation p.D309N 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GQ-06 5 140240992 140240992 G A AC005609.1 3'UTR 0.28 TCGA-D3-A8GQ-06 5 140250546 140250546 C T PCDHA11 Missense_Mutation p.P620S 0.22 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-D3-A8GQ-06 5 140250547 140250547 C T PCDHA11 Missense_Mutation p.P620L 0.23 tolerated_low_confidence(0.08) benign(0.099) TCGA-D3-A8GQ-06 5 140389224 140389224 G A PCDHAC1 Missense_Mutation p.G865E 0.32 deleterious(0.02) possibly_damaging(0.638) TCGA-D3-A8GQ-06 5 140564551 140564551 C T PCDHB16 3'UTR 0.45 TCGA-D3-A8GQ-06 5 140616200 140616200 G A PCDHB18 RNA 0.25 TCGA-D3-A8GQ-06 5 140724727 140724727 C T PCDHGA3 Missense_Mutation p.S376F 0.32 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-D3-A8GQ-06 5 140737033 140737033 G A PCDHGA4 Missense_Mutation p.E756K 0.29 deleterious_low_confidence(0) benign(0.271) TCGA-D3-A8GQ-06 5 140754732 140754732 C T PCDHGA6 Missense_Mutation p.P361L 0.24 tolerated_low_confidence(0.22) benign(0.232) TCGA-D3-A8GQ-06 5 141033787 141033787 G A ARAP3 Silent p.T1455T 0.30 TCGA-D3-A8GQ-06 5 141335641 141335641 G A PCDH12 Silent p.I592I 0.25 TCGA-D3-A8GQ-06 5 1414929 1414929 C T SLC6A3 Missense_Mutation p.D345N 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 5 1443315 1443315 G A SLC6A3 5'UTR 0.30 TCGA-D3-A8GQ-06 5 14609052 14609052 G A FAM105A Missense_Mutation p.E275K 0.30 deleterious(0) possibly_damaging(0.803) TCGA-D3-A8GQ-06 5 14758679 14758679 G A ANKH Silent p.I114I 0.30 TCGA-D3-A8GQ-06 5 147661693 147661693 G A SPINK13 Silent p.L45L 0.37 TCGA-D3-A8GQ-06 5 147695202 147695202 G A SPINK7 Silent p.L71L 0.39 TCGA-D3-A8GQ-06 5 150567008 150567008 G A CCDC69 Missense_Mutation p.S111L 0.40 tolerated(0.09) benign(0.009) TCGA-D3-A8GQ-06 5 150683068 150683068 G A SLC36A3 5'Flank 0.30 TCGA-D3-A8GQ-06 5 151775054 151775054 C A NMUR2 Silent p.L301L 0.21 TCGA-D3-A8GQ-06 5 153144007 153144007 C T GRIA1 Missense_Mutation p.R623C 0.38 deleterious(0) benign(0.103) TCGA-D3-A8GQ-06 5 156641308 156641308 C T ITK Silent p.A144A 0.31 TCGA-D3-A8GQ-06 5 156644894 156644894 C T ITK Missense_Mutation p.P158S 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-D3-A8GQ-06 5 160753427 160753427 C T GABRB2 Missense_Mutation p.G380E 0.30 tolerated(1) benign(0.023) TCGA-D3-A8GQ-06 5 161322826 161322826 C T GABRA1 Silent p.F337F 0.28 TCGA-D3-A8GQ-06 5 161524683 161524683 G A GABRG2 Missense_Mutation p.D123N 0.27 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 5 161580431 161580431 C T GABRG2 3'UTR 0.41 TCGA-D3-A8GQ-06 5 167182030 167182030 G A TENM2 Intron 0.24 TCGA-D3-A8GQ-06 5 167489206 167489206 C T TENM2 Missense_Mutation p.S484F 0.18 deleterious(0) probably_damaging(0.971) TCGA-D3-A8GQ-06 5 167489207 167489207 C T TENM2 Silent p.S484S 0.18 TCGA-D3-A8GQ-06 5 168176511 168176511 G A SLIT3 Silent p.I701I 0.34 TCGA-D3-A8GQ-06 5 168671735 168671735 G A SLIT3 Silent p.F105F 0.30 TCGA-D3-A8GQ-06 5 170159821 170159821 C T KCNIP1 Silent p.V162V 0.35 TCGA-D3-A8GQ-06 5 171520703 171520703 G A STK10 Nonsense_Mutation p.Q423* 0.34 TCGA-D3-A8GQ-06 5 17275877 17275877 G A BASP1 Silent p.K184K 0.38 TCGA-D3-A8GQ-06 5 176833031 176833031 G A F12 Silent p.F49F 0.25 TCGA-D3-A8GQ-06 5 176910916 176910916 G A PDLIM7 Silent p.F413F 0.23 TCGA-D3-A8GQ-06 5 176936506 176936506 G A DOK3 Silent p.I68I 0.28 TCGA-D3-A8GQ-06 5 180036938 180036938 G A FLT4 Silent p.F1258F 0.29 TCGA-D3-A8GQ-06 5 180050937 180050937 T C FLT4 Missense_Mutation p.K516E 0.17 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GQ-06 5 180374522 180374522 C T BTNL8 Silent p.F228F 0.28 TCGA-D3-A8GQ-06 5 19571816 19571816 C T CDH18 Silent p.G375G 0.30 TCGA-D3-A8GQ-06 5 23509164 23509164 G A PRDM9 Missense_Mutation p.E8K 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A8GQ-06 5 24488123 24488123 G A CDH10 Silent p.I672I 0.32 TCGA-D3-A8GQ-06 5 24498527 24498527 C T CDH10 Missense_Mutation p.E499K 0.28 deleterious(0) benign(0.308) TCGA-D3-A8GQ-06 5 31294219 31294219 C T CDH6 Nonsense_Mutation p.R127* 0.35 TCGA-D3-A8GQ-06 5 31305281 31305281 C T CDH6 Missense_Mutation p.L334F 0.31 deleterious(0.02) benign(0.001) TCGA-D3-A8GQ-06 5 31305527 31305527 C T CDH6 Missense_Mutation p.P416S 0.17 tolerated(0.17) benign(0.259) TCGA-D3-A8GQ-06 5 31983421 31983421 G A PDZD2 Missense_Mutation p.G213R 0.34 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 5 35032902 35032902 G A AGXT2 Missense_Mutation p.P235L 0.29 tolerated(0.52) benign(0.029) TCGA-D3-A8GQ-06 5 35628590 35628590 C T SPEF2 Silent p.S29S 0.24 TCGA-D3-A8GQ-06 5 38481851 38481851 G A LIFR Missense_Mutation p.S1047F 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-D3-A8GQ-06 5 38904069 38904069 G A OSMR Silent p.R359R 0.23 TCGA-D3-A8GQ-06 5 39311419 39311419 G A C9 Missense_Mutation p.R311C 0.31 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 5 40852518 40852518 G A CARD6 Missense_Mutation p.V362M 0.33 tolerated(0.47) benign(0.027) TCGA-D3-A8GQ-06 5 40936483 40936483 C T C7 Silent p.D108D 0.30 TCGA-D3-A8GQ-06 5 41005678 41005678 G A MROH2B Silent p.S1273S 0.29 TCGA-D3-A8GQ-06 5 41160254 41160254 A T C6 Missense_Mutation p.D558E 0.25 deleterious(0.01) possibly_damaging(0.824) TCGA-D3-A8GQ-06 5 45262788 45262788 G A HCN1 Silent p.I636I 0.27 TCGA-D3-A8GQ-06 5 56545252 56545252 C T GPBP1 Missense_Mutation p.S281F 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 5 6372672 6372672 G A MED10 Missense_Mutation p.P118S 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 5 75621408 75621408 C T SV2C 3'UTR 0.34 TCGA-D3-A8GQ-06 5 78350028 78350028 G A DMGDH Silent p.F173F 0.41 TCGA-D3-A8GQ-06 5 78416205 78416205 C T BHMT Silent p.I106I 0.18 TCGA-D3-A8GQ-06 5 78610430 78610430 C T JMY Silent p.S805S 0.18 TCGA-D3-A8GQ-06 5 82352806 82352806 G A TMEM167A 3'UTR 0.26 TCGA-D3-A8GQ-06 5 82373334 82373334 C T XRCC4 5'Flank 0.27 TCGA-D3-A8GQ-06 5 82373335 82373335 C T XRCC4 5'Flank 0.27 TCGA-D3-A8GQ-06 5 871667 871667 G A BRD9 Missense_Mutation p.P466S 0.19 tolerated(0.27) benign(0.201) TCGA-D3-A8GQ-06 5 90103449 90103449 G A GPR98 Missense_Mutation p.R4956K 0.40 benign(0.001) TCGA-D3-A8GQ-06 5 9337904 9337904 C T SEMA5A Missense_Mutation p.E49K 0.35 tolerated(0.64) benign(0.03) TCGA-D3-A8GQ-06 5 95728617 95728617 C T PCSK1 3'UTR 0.35 TCGA-D3-A8GQ-06 5 96215795 96215795 G A ERAP2 Missense_Mutation p.E136K 0.26 tolerated(0.94) benign(0.001) TCGA-D3-A8GQ-06 5 9629674 9629674 C T TAS2R1 Silent p.R157R 0.24 TCGA-D3-A8GQ-06 6 105564630 105564631 TC G BVES Frame_Shift_Del p.G254Afs*11 0.20 TCGA-D3-A8GQ-06 6 106967963 106967963 C T AIM1 Silent p.F552F 0.43 TCGA-D3-A8GQ-06 6 109954514 109954514 G A AK9 Missense_Mutation p.R316C 0.24 deleterious(0) possibly_damaging(0.841) TCGA-D3-A8GQ-06 6 11185674 11185674 G A NEDD9 Silent p.F742F 0.26 TCGA-D3-A8GQ-06 6 116752271 116752271 C T DSE Silent p.L275L 0.34 TCGA-D3-A8GQ-06 6 117252728 117252728 C T RFX6 3'UTR 0.23 TCGA-D3-A8GQ-06 6 117658469 117658469 G A ROS1 Missense_Mutation p.S1705L 0.40 deleterious(0.02) possibly_damaging(0.685) TCGA-D3-A8GQ-06 6 117686895 117686895 G A ROS1 Missense_Mutation p.S941F 0.28 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GQ-06 6 119327296 119327296 G A FAM184A Intron 0.18 TCGA-D3-A8GQ-06 6 119345882 119345882 C T FAM184A Missense_Mutation p.E86K 0.35 deleterious(0) possibly_damaging(0.834) TCGA-D3-A8GQ-06 6 119669908 119669908 C T MAN1A1 Missense_Mutation p.G108E 0.23 tolerated(1) benign(0.003) TCGA-D3-A8GQ-06 6 127912813 127912813 G A C6orf58 3'UTR 0.26 TCGA-D3-A8GQ-06 6 128134085 128134085 C T THEMIS Silent p.K567K 0.26 TCGA-D3-A8GQ-06 6 128134393 128134393 C T THEMIS Missense_Mutation p.D465N 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 128134538 128134538 G A THEMIS Silent p.I416I 0.20 TCGA-D3-A8GQ-06 6 129573432 129573432 C T LAMA2 Silent p.A696A 0.33 TCGA-D3-A8GQ-06 6 129591792 129591792 C T LAMA2 Silent p.G782G 0.21 TCGA-D3-A8GQ-06 6 133833883 133833883 G A EYA4 Missense_Mutation p.D436N 0.27 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GQ-06 6 135520143 135520143 C T MYB Missense_Mutation p.P555L 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 13591963 13591963 C T SIRT5 Silent p.Y104Y 0.12 TCGA-D3-A8GQ-06 6 136599345 136599345 G A BCLAF1 Missense_Mutation p.S225L 0.10 deleterious(0) possibly_damaging(0.504) TCGA-D3-A8GQ-06 6 136599690 136599690 G A BCLAF1 Missense_Mutation p.S110L 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GQ-06 6 136963658 136963658 C T MAP3K5 Missense_Mutation p.S613N 0.32 deleterious(0.01) benign(0.196) TCGA-D3-A8GQ-06 6 142399847 142399847 C T NMBR Missense_Mutation p.E206K 0.26 tolerated(0.39) possibly_damaging(0.527) TCGA-D3-A8GQ-06 6 143081419 143081419 G A HIVEP2 Silent p.F2002F 0.29 TCGA-D3-A8GQ-06 6 150004628 150004628 G T LATS1 Missense_Mutation p.P533T 0.25 tolerated(0.09) benign(0.011) TCGA-D3-A8GQ-06 6 152644692 152644692 G A SYNE1 Nonsense_Mutation p.Q5280* 0.27 TCGA-D3-A8GQ-06 6 153078238 153078238 G A VIP Missense_Mutation p.G159R 0.44 deleterious(0.03) possibly_damaging(0.844) TCGA-D3-A8GQ-06 6 153078239 153078239 G A VIP Missense_Mutation p.G159E 0.44 tolerated(0.41) possibly_damaging(0.782) TCGA-D3-A8GQ-06 6 15513144 15513144 A C JARID2 Splice_Site p.X1046_splice 0.21 TCGA-D3-A8GQ-06 6 159654529 159654529 G A FNDC1 Silent p.R995R 0.16 TCGA-D3-A8GQ-06 6 161139416 161139416 G A PLG Missense_Mutation p.G293E 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-D3-A8GQ-06 6 161771084 161771084 G A PARK2 3'UTR 0.33 TCGA-D3-A8GQ-06 6 163510416 163510416 C T PACRG Silent p.L197L 0.27 TCGA-D3-A8GQ-06 6 167789530 167789530 G A TCP10 Silent p.S204S 0.25 TCGA-D3-A8GQ-06 6 17507501 17507501 G A CAP2 Silent p.S134S 0.29 TCGA-D3-A8GQ-06 6 17507502 17507502 G A CAP2 Missense_Mutation p.A135T 0.29 deleterious(0.02) probably_damaging(0.982) TCGA-D3-A8GQ-06 6 18160172 18160172 C T KDM1B Missense_Mutation p.H16Y 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.504) TCGA-D3-A8GQ-06 6 24178596 24178596 C T DCDC2 Missense_Mutation p.E430K 0.43 deleterious_low_confidence(0.04) benign(0.014) TCGA-D3-A8GQ-06 6 24472861 24472861 C T GPLD1 Missense_Mutation p.G165E 0.41 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 24515510 24515510 C T ALDH5A1 Missense_Mutation p.S294F 0.17 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 6 24658832 24658832 T G TDP2 Missense_Mutation p.N128H 0.25 deleterious(0.02) benign(0.114) TCGA-D3-A8GQ-06 6 25482543 25482543 T C LRRC16A Silent p.N311N 0.21 TCGA-D3-A8GQ-06 6 26022262 26022262 C T HIST1H4A 3'UTR 0.41 TCGA-D3-A8GQ-06 6 26091278 26091278 C T HFE Missense_Mutation p.H96Y 0.21 tolerated(0.06) possibly_damaging(0.506) TCGA-D3-A8GQ-06 6 26370790 26370790 C T BTN3A2 Missense_Mutation p.S225F 0.24 tolerated(0.19) possibly_damaging(0.845) TCGA-D3-A8GQ-06 6 27420225 27420225 G A ZNF184 Silent p.F371F 0.15 TCGA-D3-A8GQ-06 6 27833296 27833296 T G HIST1H2AL Missense_Mutation p.V55G 0.29 deleterious_low_confidence(0.01) benign(0.103) TCGA-D3-A8GQ-06 6 28227736 28227736 G A NKAPL Missense_Mutation p.R196K 0.23 tolerated(0.7) unknown(0) TCGA-D3-A8GQ-06 6 28294216 28294216 G A ZSCAN31 Silent p.I316I 0.21 TCGA-D3-A8GQ-06 6 28497379 28497379 C T GPX5 Missense_Mutation p.P80L 0.21 tolerated(0.8) benign(0.026) TCGA-D3-A8GQ-06 6 28501836 28501836 C T GPX5 Silent p.F186F 0.29 TCGA-D3-A8GQ-06 6 28541415 28541415 C T SCAND3 Missense_Mutation p.D751N 0.16 tolerated_low_confidence(0.18) probably_damaging(0.984) TCGA-D3-A8GQ-06 6 29142318 29142318 G A OR2J2 Silent p.A302A 0.16 TCGA-D3-A8GQ-06 6 29364801 29364801 G A OR12D2 Missense_Mutation p.E109K 0.18 deleterious(0.01) possibly_damaging(0.75) TCGA-D3-A8GQ-06 6 29407994 29407994 T C OR10C1 Silent p.L68L 0.42 TCGA-D3-A8GQ-06 6 29976930 29976930 G T ZNRD1-AS1 RNA 0.24 TCGA-D3-A8GQ-06 6 30079428 30079428 G A TRIM31 Silent p.F170F 0.30 TCGA-D3-A8GQ-06 6 30115689 30115689 C T TRIM40 3'UTR 0.38 TCGA-D3-A8GQ-06 6 30310031 30310031 G T TRIM39 Nonsense_Mutation p.E518* 0.26 TCGA-D3-A8GQ-06 6 30864528 30864528 C T DDR1 Silent p.T585T 0.20 TCGA-D3-A8GQ-06 6 31079427 31079427 C T C6orf15 Missense_Mutation p.G237R 0.22 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GQ-06 6 31084250 31084250 C T CDSN Missense_Mutation p.G381E 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-D3-A8GQ-06 6 31911434 31911434 C T CFB Silent p.S374S 0.18 TCGA-D3-A8GQ-06 6 32013960 32013960 C T TNXB 5'Flank 0.20 TCGA-D3-A8GQ-06 6 32041498 32041498 C T RNA5SP206 3'Flank 0.24 TCGA-D3-A8GQ-06 6 32260855 32260855 C T C6orf10 Missense_Mutation p.G532E 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GQ-06 6 33256439 33256439 G A WDR46 Silent p.V104V 0.25 TCGA-D3-A8GQ-06 6 34100794 34100794 C T GRM4 Silent p.S160S 0.15 TCGA-D3-A8GQ-06 6 36168151 36168151 C T BRPF3 Missense_Mutation p.P18S 0.24 tolerated(0.3) probably_damaging(0.998) TCGA-D3-A8GQ-06 6 36270103 36270103 C T PNPLA1 Missense_Mutation p.S414F 0.31 deleterious_low_confidence(0) benign(0.316) TCGA-D3-A8GQ-06 6 36368261 36368261 C T PXT1 Silent p.G90G 0.20 TCGA-D3-A8GQ-06 6 36995272 36995272 G A FGD2 Nonsense_Mutation p.W558* 0.32 TCGA-D3-A8GQ-06 6 37186781 37186781 A G TMEM217 Missense_Mutation p.M9T 0.26 deleterious(0) possibly_damaging(0.844) TCGA-D3-A8GQ-06 6 38691141 38691141 G A DNAH8 5'UTR 0.30 TCGA-D3-A8GQ-06 6 38738283 38738283 C T DNAH8 Missense_Mutation p.S354L 0.21 probably_damaging(0.984) TCGA-D3-A8GQ-06 6 38881675 38881675 G A DNAH8 Missense_Mutation p.D3087N 0.22 possibly_damaging(0.561) TCGA-D3-A8GQ-06 6 40400004 40400004 C T LRFN2 Silent p.E283E 0.52 TCGA-D3-A8GQ-06 6 43166359 43166359 C T CUL9 Missense_Mutation p.P939L 0.50 tolerated(0.16) benign(0.002) TCGA-D3-A8GQ-06 6 43516197 43516197 G A XPO5 Missense_Mutation p.P621S 0.24 deleterious(0.01) probably_damaging(0.931) TCGA-D3-A8GQ-06 6 43578425 43578425 C T POLH Silent p.I403I 0.24 TCGA-D3-A8GQ-06 6 44255413 44255413 C T TCTE1 Silent p.R50R 0.19 TCGA-D3-A8GQ-06 6 44274758 44274758 G A AARS2 Missense_Mutation p.R351C 0.15 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 45909294 45909294 C T CLIC5 Silent p.Q291Q 0.23 TCGA-D3-A8GQ-06 6 46657301 46657301 G A TDRD6 Missense_Mutation p.R479K 0.39 tolerated(0.96) benign(0.006) TCGA-D3-A8GQ-06 6 49696315 49696315 G T CRISP3 3'UTR 0.40 TCGA-D3-A8GQ-06 6 49754229 49754229 G A PGK2 Silent p.I224I 0.47 TCGA-D3-A8GQ-06 6 49754853 49754853 C T PGK2 Silent p.G16G 0.37 TCGA-D3-A8GQ-06 6 50681713 50681713 C T TFAP2D 5'UTR 0.21 TCGA-D3-A8GQ-06 6 51491827 51491827 C T PKHD1 Missense_Mutation p.G3918E 0.20 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 6 51893037 51893037 G A PKHD1 Silent p.G1159G 0.20 TCGA-D3-A8GQ-06 6 54208062 54208062 T C TINAG Silent p.F221F 0.48 TCGA-D3-A8GQ-06 6 54805159 54805159 C T FAM83B Missense_Mutation p.R464W 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 6 54806469 54806469 G A FAM83B Silent p.R900R 0.25 TCGA-D3-A8GQ-06 6 55039307 55039307 C T HCRTR2 5'UTR 0.20 TCGA-D3-A8GQ-06 6 55147082 55147082 C T HCRTR2 Missense_Mutation p.R389C 0.32 tolerated(0.13) benign(0.007) TCGA-D3-A8GQ-06 6 55378822 55378822 G A HMGCLL1 Intron 0.25 TCGA-D3-A8GQ-06 6 55739237 55739237 C T BMP5 Missense_Mutation p.A143T 0.31 tolerated(0.23) benign(0.081) TCGA-D3-A8GQ-06 6 56417076 56417076 G A DST Missense_Mutation p.S2882F 0.35 benign(0.008) TCGA-D3-A8GQ-06 6 57012601 57012601 C T ZNF451 Missense_Mutation p.S573L 0.29 deleterious(0.01) benign(0.007) TCGA-D3-A8GQ-06 6 6266862 6266862 G A F13A1 Missense_Mutation p.P167L 0.21 tolerated(0.08) probably_damaging(0.987) TCGA-D3-A8GQ-06 6 69943182 69943182 G A BAI3 Silent p.T827T 0.36 TCGA-D3-A8GQ-06 6 69943298 69943298 C T BAI3 Missense_Mutation p.P866L 0.28 tolerated(0.07) probably_damaging(0.997) TCGA-D3-A8GQ-06 6 70064162 70064162 A T BAI3 Missense_Mutation p.Q1166L 0.33 tolerated(0.07) benign(0.002) TCGA-D3-A8GQ-06 6 71603840 71603840 C T B3GAT2 Missense_Mutation p.D243N 0.37 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GQ-06 6 7232112 7232112 C T RREB1 Silent p.S1260S 0.07 TCGA-D3-A8GQ-06 6 73110367 73110367 C T RIMS1 Missense_Mutation p.S1677F 0.23 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GQ-06 6 74115402 74115402 G A DDX43 Silent p.R217R 0.23 TCGA-D3-A8GQ-06 6 74117228 74117228 C T DDX43 Silent p.S309S 0.30 TCGA-D3-A8GQ-06 6 74189832 74189832 C T MTO1 Missense_Mutation p.A371V 0.34 tolerated(0.29) probably_damaging(0.929) TCGA-D3-A8GQ-06 6 7585589 7585589 C T DSP Silent p.F2698F 0.47 TCGA-D3-A8GQ-06 6 76024091 76024091 C T FILIP1 Missense_Mutation p.R486K 0.27 tolerated(1) benign(0.001) TCGA-D3-A8GQ-06 6 76124578 76124578 T C FILIP1 Silent p.K37K 0.27 TCGA-D3-A8GQ-06 6 76124600 76124600 T C FILIP1 Missense_Mutation p.K30R 0.30 tolerated_low_confidence(0.28) benign(0.016) TCGA-D3-A8GQ-06 6 7845565 7845565 G A BMP6 Missense_Mutation p.R286K 0.24 tolerated(0.07) probably_damaging(0.976) TCGA-D3-A8GQ-06 6 82937001 82937001 G A IBTK Missense_Mutation p.H188Y 0.36 deleterious(0) probably_damaging(0.956) TCGA-D3-A8GQ-06 6 83075752 83075752 C T TPBG Silent p.F358F 0.27 TCGA-D3-A8GQ-06 6 84234258 84234258 C T PRSS35 Silent p.I366I 0.28 TCGA-D3-A8GQ-06 6 84765138 84765138 C T MRAP2 Missense_Mutation p.S34F 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GQ-06 6 86176785 86176785 G A NT5E Missense_Mutation p.G116E 0.39 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 88331196 88331196 C T ORC3 Missense_Mutation p.S371F 0.27 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 6 88854756 88854756 C T CNR1 Missense_Mutation p.E80K 0.41 deleterious_low_confidence(0.03) benign(0.021) TCGA-D3-A8GQ-06 6 90440494 90440494 G A MDN1 Silent p.F1697F 0.27 TCGA-D3-A8GQ-06 6 96651159 96651159 C T FUT9 Missense_Mutation p.S43L 0.28 tolerated(0.05) benign(0.309) TCGA-D3-A8GQ-06 6 97053881 97053881 G A FHL5 Silent p.E146E 0.28 TCGA-D3-A8GQ-06 6 97247527 97247527 C T GPR63 Missense_Mutation p.M27I 0.25 tolerated_low_confidence(0.6) benign(0) TCGA-D3-A8GQ-06 7 100184252 100184252 G A FBXO24 5'Flank 0.47 TCGA-D3-A8GQ-06 7 100231164 100231164 C T TFR2 Silent p.R163R 0.32 TCGA-D3-A8GQ-06 7 100377129 100377129 G A ZAN Missense_Mutation p.G2126R 0.55 unknown(0) TCGA-D3-A8GQ-06 7 100692206 100692206 C T MUC17 Missense_Mutation p.H4206Y 0.19 unknown(0) TCGA-D3-A8GQ-06 7 102575050 102575050 C A LRRC17 Silent p.P230P 0.16 TCGA-D3-A8GQ-06 7 102575051 102575051 C T LRRC17 Missense_Mutation p.P231S 0.16 tolerated(0.91) benign(0) TCGA-D3-A8GQ-06 7 102940667 102940667 G A PMPCB Missense_Mutation p.E124K 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 7 107880488 107880488 C T NRCAM Silent p.P7P 0.36 TCGA-D3-A8GQ-06 7 111400309 111400309 C T DOCK4 Missense_Mutation p.E1355K 0.21 deleterious(0) probably_damaging(0.956) TCGA-D3-A8GQ-06 7 112423828 112423828 A T TMEM168 Missense_Mutation p.H351Q 0.48 deleterious(0.02) possibly_damaging(0.899) TCGA-D3-A8GQ-06 7 113518965 113518965 C T PPP1R3A Missense_Mutation p.G728S 0.19 tolerated(0.08) possibly_damaging(0.881) TCGA-D3-A8GQ-06 7 113558325 113558325 G A PPP1R3A Missense_Mutation p.P243S 0.19 tolerated(0.09) benign(0.063) TCGA-D3-A8GQ-06 7 115581000 115581000 G A TFEC Intron 0.12 TCGA-D3-A8GQ-06 7 116339804 116339804 G A MET Silent p.T222T 0.44 TCGA-D3-A8GQ-06 7 116918113 116918113 G A WNT2 3'UTR 0.19 TCGA-D3-A8GQ-06 7 117020058 117020058 A G ASZ1 Missense_Mutation p.L330P 0.18 deleterious(0) possibly_damaging(0.853) TCGA-D3-A8GQ-06 7 117020059 117020059 G A ASZ1 Missense_Mutation p.L330F 0.18 deleterious(0.04) benign(0.049) TCGA-D3-A8GQ-06 7 120385953 120385953 C T KCND2 Silent p.C529C 0.23 TCGA-D3-A8GQ-06 7 122755709 122755709 C A SLC13A1 Missense_Mutation p.V551F 0.28 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GQ-06 7 123508663 123508663 C T HYAL4 Silent p.L112L 0.37 TCGA-D3-A8GQ-06 7 123600076 123600076 C T SPAM1 Intron 0.22 TCGA-D3-A8GQ-06 7 126086134 126086134 G A GRM8 Intron 0.45 TCGA-D3-A8GQ-06 7 126746665 126746665 T C GRM8 Silent p.Q204Q 0.21 TCGA-D3-A8GQ-06 7 128582271 128582271 C T IRF5 Missense_Mutation p.P46S 0.44 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 7 129040136 129040136 C T AHCYL2 Missense_Mutation p.P277S 0.39 tolerated(0.22) benign(0.03) TCGA-D3-A8GQ-06 7 130038694 130038694 G A CEP41 3'UTR 0.40 TCGA-D3-A8GQ-06 7 132193185 132193185 C T PLXNA4 Missense_Mutation p.E90K 0.49 tolerated(0.08) benign(0.05) TCGA-D3-A8GQ-06 7 136700266 136700266 G A CHRM2 Silent p.K218K 0.27 TCGA-D3-A8GQ-06 7 137206710 137206710 G A DGKI Missense_Mutation p.P717L 0.44 tolerated(0.08) probably_damaging(0.93) TCGA-D3-A8GQ-06 7 137237174 137237174 C T DGKI Silent p.R696R 0.51 TCGA-D3-A8GQ-06 7 137255981 137255981 G A DGKI Silent p.F629F 0.46 TCGA-D3-A8GQ-06 7 137792281 137792281 C T AKR1D1 Silent p.V270V 0.38 TCGA-D3-A8GQ-06 7 138711474 138711474 G A ZC3HAV1L Missense_Mutation p.S289L 0.30 tolerated(0.12) benign(0.003) TCGA-D3-A8GQ-06 7 139026026 139026026 G T C7orf55 5'UTR 0.40 TCGA-D3-A8GQ-06 7 139724655 139724655 G A PARP12 Missense_Mutation p.S604F 0.42 tolerated(0.05) probably_damaging(1) TCGA-D3-A8GQ-06 7 13975372 13975372 G A ETV1 Missense_Mutation p.S172L 0.26 tolerated(0.66) benign(0.342) TCGA-D3-A8GQ-06 7 141424826 141424826 G A WEE2 Missense_Mutation p.D408N 0.22 tolerated(0.61) benign(0.107) TCGA-D3-A8GQ-06 7 141490615 141490615 C T TAS2R5 Missense_Mutation p.P152S 0.45 tolerated(1) benign(0.01) TCGA-D3-A8GQ-06 7 141536998 141536998 G A PRSS37 Nonsense_Mutation p.R161* 0.23 TCGA-D3-A8GQ-06 7 141629853 141629853 T C CLEC5A 3'UTR 0.45 TCGA-D3-A8GQ-06 7 141752191 141752191 C T MGAM Missense_Mutation p.P968L 0.50 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GQ-06 7 141800614 141800614 C T MGAM Silent p.F1733F 0.10 TCGA-D3-A8GQ-06 7 142045329 142045329 C T TRBV4-2 5'UTR 0.18 TCGA-D3-A8GQ-06 7 142239822 142239822 C T TRBV9 Missense_Mutation p.D20N 0.21 tolerated(0.08) benign(0.139) TCGA-D3-A8GQ-06 7 142378908 142378908 G A MTRNR2L6 3'Flank 0.41 TCGA-D3-A8GQ-06 7 142428720 142428720 C T TRBV28 Missense_Mutation p.S27L 0.19 deleterious(0.01) benign(0.012) TCGA-D3-A8GQ-06 7 142500223 142500223 C T TRBC2 3'UTR 0.19 TCGA-D3-A8GQ-06 7 142627264 142627264 C T TRPV5 Missense_Mutation p.E80K 0.25 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GQ-06 7 143095955 143095955 C T EPHA1 Missense_Mutation p.G359R 0.16 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 7 143270255 143270255 C T CTAGE15 Missense_Mutation p.H449Y 0.21 tolerated(0.33) benign(0.013) TCGA-D3-A8GQ-06 7 143453526 143453526 C T CTAGE6 Missense_Mutation p.R409Q 0.29 tolerated(0.08) benign(0.22) TCGA-D3-A8GQ-06 7 143632329 143632329 G A OR2F2 Missense_Mutation p.E2K 0.45 tolerated(0.31) benign(0.003) TCGA-D3-A8GQ-06 7 143632814 143632814 C T OR2F2 Silent p.T163T 0.26 TCGA-D3-A8GQ-06 7 143747840 143747840 G A OR2A5 Missense_Mutation p.V116I 0.52 deleterious(0.02) benign(0.046) TCGA-D3-A8GQ-06 7 144060277 144060277 C T ARHGEF5 Missense_Mutation p.T172I 0.15 tolerated(0.12) benign(0.122) TCGA-D3-A8GQ-06 7 144101697 144101697 G A NOBOX Silent p.S54S 0.67 TCGA-D3-A8GQ-06 7 14622740 14622740 G A DGKB Missense_Mutation p.P487S 0.24 tolerated(0.06) benign(0.177) TCGA-D3-A8GQ-06 7 14622749 14622749 G A DGKB Missense_Mutation p.R484C 0.45 deleterious(0) benign(0.299) TCGA-D3-A8GQ-06 7 1482056 1482056 G A MICALL2 Missense_Mutation p.P495S 0.54 tolerated(0.13) benign(0.354) TCGA-D3-A8GQ-06 7 149462832 149462832 G A ZNF467 Silent p.F253F 0.20 TCGA-D3-A8GQ-06 7 149543277 149543277 C T ZNF862 Silent p.F58F 0.49 TCGA-D3-A8GQ-06 7 150028223 150028223 G A ZBED6CL 3'UTR 0.25 TCGA-D3-A8GQ-06 7 150656814 150656814 G A KCNH2 Silent p.F106F 0.51 TCGA-D3-A8GQ-06 7 150742365 150742365 G A ABCB8 Missense_Mutation p.D696N 0.20 tolerated(0.09) benign(0.063) TCGA-D3-A8GQ-06 7 150883971 150883971 G A ASB10 Missense_Mutation p.P83S 0.61 tolerated(0.15) benign(0.155) TCGA-D3-A8GQ-06 7 150884109 150884109 C T ASB10 Missense_Mutation p.E37K 0.64 tolerated(0.07) benign(0.035) TCGA-D3-A8GQ-06 7 150935537 150935537 G A CHPF2 Missense_Mutation p.E697K 0.40 deleterious(0.01) possibly_damaging(0.574) TCGA-D3-A8GQ-06 7 1525047 1525047 G A INTS1 Missense_Mutation p.P1012L 0.24 tolerated(0.16) benign(0.002) TCGA-D3-A8GQ-06 7 1539547 1539547 G C INTS1 Missense_Mutation p.D219E 0.26 tolerated(0.69) benign(0.064) TCGA-D3-A8GQ-06 7 18801886 18801886 C T HDAC9 Missense_Mutation p.P717L 0.39 deleterious(0.04) benign(0.079) TCGA-D3-A8GQ-06 7 20193857 20193857 C T MACC1 Missense_Mutation p.E769K 0.14 deleterious(0) possibly_damaging(0.632) TCGA-D3-A8GQ-06 7 2108856 2108856 G A MAD1L1 Silent p.L397L 0.22 TCGA-D3-A8GQ-06 7 21611460 21611460 G A DNAH11 Missense_Mutation p.E488K 0.26 possibly_damaging(0.894) TCGA-D3-A8GQ-06 7 21892142 21892142 G A DNAH11 Missense_Mutation p.D3659N 0.21 benign(0.111) TCGA-D3-A8GQ-06 7 23810687 23810687 C T STK31 Missense_Mutation p.H593Y 0.21 tolerated(0.69) benign(0.003) TCGA-D3-A8GQ-06 7 26904020 26904020 G A SKAP2 Missense_Mutation p.P10L 0.40 tolerated(0.62) benign(0.002) TCGA-D3-A8GQ-06 7 30008545 30008545 C T SCRN1 Missense_Mutation p.E67K 0.17 tolerated(0.49) benign(0.419) TCGA-D3-A8GQ-06 7 30868295 30868295 G A FAM188B Silent p.R358R 0.28 TCGA-D3-A8GQ-06 7 31104516 31104516 G A ADCYAP1R1 Missense_Mutation p.A41T 0.18 tolerated(0.34) benign(0.184) TCGA-D3-A8GQ-06 7 31887622 31887622 C T PDE1C Missense_Mutation p.E374K 0.17 tolerated(0.09) probably_damaging(0.934) TCGA-D3-A8GQ-06 7 37355537 37355537 C T ELMO1 Missense_Mutation p.E36K 0.25 tolerated(0.06) possibly_damaging(0.849) TCGA-D3-A8GQ-06 7 38370027 38370027 T C TRGV8 Missense_Mutation p.S91G 0.42 tolerated(1) benign(0.002) TCGA-D3-A8GQ-06 7 38389216 38389216 G A TRGV5 Missense_Mutation p.P32S 0.52 tolerated(0.75) benign(0.005) TCGA-D3-A8GQ-06 7 38725306 38725306 G A FAM183B Silent p.V100V 0.26 TCGA-D3-A8GQ-06 7 39247022 39247022 C T POU6F2 Missense_Mutation p.A105V 0.44 tolerated(0.74) probably_damaging(0.97) TCGA-D3-A8GQ-06 7 43351666 43351666 G A HECW1 Nonsense_Mutation p.W111* 0.21 TCGA-D3-A8GQ-06 7 43495908 43495908 G A HECW1 Missense_Mutation p.R838Q 0.64 deleterious(0) probably_damaging(0.983) TCGA-D3-A8GQ-06 7 43917254 43917254 C T URGCP Missense_Mutation p.G603E 0.24 tolerated(0.13) benign(0.156) TCGA-D3-A8GQ-06 7 44802893 44802893 C T ZMIZ2 Missense_Mutation p.P581S 0.45 tolerated(0.22) benign(0.003) TCGA-D3-A8GQ-06 7 45697404 45697404 G A ADCY1 Silent p.L409L 0.23 TCGA-D3-A8GQ-06 7 48139310 48139310 A G UPP1 Missense_Mutation p.K30E 0.44 tolerated(0.43) benign(0) TCGA-D3-A8GQ-06 7 50121384 50121384 C T ZPBP Missense_Mutation p.G107E 0.42 tolerated(0.1) probably_damaging(1) TCGA-D3-A8GQ-06 7 57528722 57528722 C T ZNF716 Silent p.F185F 0.18 TCGA-D3-A8GQ-06 7 62752562 62752562 T A ZNF733P RNA 0.14 TCGA-D3-A8GQ-06 7 62752563 62752563 T C ZNF733P RNA 0.15 TCGA-D3-A8GQ-06 7 62758696 62758696 C T ZNF733P RNA 0.23 TCGA-D3-A8GQ-06 7 6502680 6502680 G A KDELR2 3'UTR 0.46 TCGA-D3-A8GQ-06 7 65557768 65557768 G A ASL Missense_Mutation p.G422S 0.30 tolerated(0.77) benign(0) TCGA-D3-A8GQ-06 7 70251019 70251019 C T AUTS2 Missense_Mutation p.S768F 0.34 deleterious(0) possibly_damaging(0.653) TCGA-D3-A8GQ-06 7 76891536 76891536 G A CCDC146 Missense_Mutation p.R362Q 0.21 deleterious(0) possibly_damaging(0.742) TCGA-D3-A8GQ-06 7 82455927 82455927 G A PCLO Missense_Mutation p.S4798L 0.20 unknown(0) TCGA-D3-A8GQ-06 7 86493793 86493793 G A GRM3 3'UTR 0.48 TCGA-D3-A8GQ-06 7 92735311 92735311 C T SAMD9 Missense_Mutation p.E34K 0.41 deleterious(0.04) benign(0.055) TCGA-D3-A8GQ-06 7 94050360 94050360 G A COL1A2 Missense_Mutation p.D779N 0.21 unknown(0) TCGA-D3-A8GQ-06 7 94164744 94164744 T C CASD1 Missense_Mutation p.V251A 0.46 tolerated(0.19) possibly_damaging(0.828) TCGA-D3-A8GQ-06 7 94740690 94740690 G A PPP1R9A Silent p.V505V 0.24 TCGA-D3-A8GQ-06 7 97498327 97498327 G A ASNS Missense_Mutation p.H48Y 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 7 99811714 99811714 G A STAG3 3'UTR 0.44 TCGA-D3-A8GQ-06 8 100115269 100115269 C T VPS13B Silent p.I167I 0.24 TCGA-D3-A8GQ-06 8 10387043 10387043 G A PRSS55 Missense_Mutation p.G61R 0.29 tolerated(0.5) benign(0.017) TCGA-D3-A8GQ-06 8 10469482 10469482 G A RP1L1 Missense_Mutation p.S709L 0.40 benign(0.015) TCGA-D3-A8GQ-06 8 104831781 104831781 C T RIMS2 Intron 0.26 TCGA-D3-A8GQ-06 8 105264144 105264144 T C RIMS2 3'Flank 0.38 TCGA-D3-A8GQ-06 8 105393510 105393510 G A DPYS Silent p.P492P 0.29 TCGA-D3-A8GQ-06 8 105436532 105436532 C T DPYS Missense_Mutation p.G393E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 8 105459635 105459635 C T DPYS Missense_Mutation p.E174K 0.34 deleterious(0.04) possibly_damaging(0.594) TCGA-D3-A8GQ-06 8 106814062 106814062 C T ZFPM2 Silent p.F584F 0.31 TCGA-D3-A8GQ-06 8 106814193 106814193 C T ZFPM2 Missense_Mutation p.S628F 0.32 deleterious(0) probably_damaging(0.972) TCGA-D3-A8GQ-06 8 106815447 106815447 G A ZFPM2 Missense_Mutation p.G1046D 0.37 tolerated_low_confidence(0.11) probably_damaging(1) TCGA-D3-A8GQ-06 8 107781797 107781797 C T ABRA Missense_Mutation p.G208R 0.25 tolerated(0.26) benign(0.035) TCGA-D3-A8GQ-06 8 110100524 110100524 G A TRHR Silent p.R261R 0.34 TCGA-D3-A8GQ-06 8 110431460 110431460 G A PKHD1L1 Missense_Mutation p.G832E 0.21 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GQ-06 8 110505942 110505942 G A PKHD1L1 Missense_Mutation p.G3430E 0.24 tolerated(1) benign(0.01) TCGA-D3-A8GQ-06 8 110534430 110534430 C T PKHD1L1 Missense_Mutation p.S4016F 0.33 tolerated(0.06) benign(0.099) TCGA-D3-A8GQ-06 8 110986320 110986320 C T KCNV1 Missense_Mutation p.E100K 0.44 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GQ-06 8 113323316 113323316 G A CSMD3 Silent p.V2592V 0.23 TCGA-D3-A8GQ-06 8 113529451 113529451 G A CSMD3 Missense_Mutation p.S1523F 0.25 deleterious(0.05) probably_damaging(0.982) TCGA-D3-A8GQ-06 8 114326825 114326825 G A CSMD3 Missense_Mutation p.P126S 0.33 tolerated(0.33) probably_damaging(0.975) TCGA-D3-A8GQ-06 8 11606440 11606440 A C GATA4 Missense_Mutation p.D210A 0.22 deleterious(0) benign(0.04) TCGA-D3-A8GQ-06 8 118147566 118147566 C T SLC30A8 5'Flank 0.29 TCGA-D3-A8GQ-06 8 119122652 119122652 C A EXT1 Missense_Mutation p.G212C 0.28 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 8 120629774 120629774 G A ENPP2 Missense_Mutation p.S170F 0.21 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 8 121211775 121211775 C T COL14A1 Missense_Mutation p.R283C 0.29 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GQ-06 8 121295969 121295969 G A COL14A1 Missense_Mutation p.E1307K 0.33 deleterious(0) probably_damaging(0.963) TCGA-D3-A8GQ-06 8 121344395 121344395 G A COL14A1 Missense_Mutation p.D1559N 0.35 deleterious(0.02) possibly_damaging(0.458) TCGA-D3-A8GQ-06 8 121457623 121457623 A C MRPL13 5'UTR 0.36 TCGA-D3-A8GQ-06 8 124449465 124449465 C T WDYHV1 Silent p.I133I 0.28 TCGA-D3-A8GQ-06 8 124988228 124988228 G A FER1L6 Missense_Mutation p.M258I 0.31 deleterious(0.02) benign(0.038) TCGA-D3-A8GQ-06 8 124993032 124993032 C T FER1L6 Missense_Mutation p.S464L 0.36 tolerated(0.1) benign(0.018) TCGA-D3-A8GQ-06 8 125082829 125082829 G A FER1L6 Missense_Mutation p.G1319E 0.21 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 8 126085410 126085410 G A KIAA0196 Missense_Mutation p.H379Y 0.36 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GQ-06 8 131140285 131140285 G A ASAP1 Silent p.F423F 0.18 TCGA-D3-A8GQ-06 8 131964202 131964202 C T ADCY8 Missense_Mutation p.E385K 0.26 deleterious(0.02) benign(0.182) TCGA-D3-A8GQ-06 8 132051782 132051782 G A ADCY8 Silent p.L266L 0.39 TCGA-D3-A8GQ-06 8 132980672 132980672 C T EFR3A Missense_Mutation p.S329F 0.32 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GQ-06 8 133047060 133047060 C T OC90 Missense_Mutation p.G234E 0.39 tolerated(0.42) possibly_damaging(0.628) TCGA-D3-A8GQ-06 8 133187714 133187714 G A KCNQ3 Silent p.L307L 0.30 TCGA-D3-A8GQ-06 8 133829758 133829758 T C PHF20L1 Missense_Mutation p.I516T 0.27 tolerated(0.25) benign(0.03) TCGA-D3-A8GQ-06 8 139144877 139144877 C T FAM135B Missense_Mutation p.E1394K 0.21 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GQ-06 8 139163500 139163500 G A FAM135B Missense_Mutation p.S1073F 0.34 deleterious(0) probably_damaging(0.979) TCGA-D3-A8GQ-06 8 139164235 139164235 G A FAM135B Missense_Mutation p.P828L 0.23 tolerated_low_confidence(0.13) benign(0) TCGA-D3-A8GQ-06 8 142367049 142367049 C T GPR20 Silent p.V325V 0.05 TCGA-D3-A8GQ-06 8 1497676 1497676 G A DLGAP2 Missense_Mutation p.A273T 0.34 tolerated(0.4) possibly_damaging(0.77) TCGA-D3-A8GQ-06 8 16026357 16026357 C T MSR1 Silent p.T80T 0.29 TCGA-D3-A8GQ-06 8 17137891 17137891 T C VPS37A Missense_Mutation p.L303S 0.30 tolerated(0.53) benign(0.102) TCGA-D3-A8GQ-06 8 17421139 17421139 T A SLC7A2 Missense_Mutation p.F607I 0.27 tolerated(0.16) benign(0.037) TCGA-D3-A8GQ-06 8 22054770 22054770 C T BMP1 Silent p.F648F 0.26 TCGA-D3-A8GQ-06 8 23056803 23056803 G A TNFRSF10A Silent p.S330S 0.33 TCGA-D3-A8GQ-06 8 24167439 24167439 G A ADAM28 Missense_Mutation p.M61I 0.33 tolerated(0.39) benign(0.032) TCGA-D3-A8GQ-06 8 24171001 24171001 G A ADAM28 Missense_Mutation p.E162K 0.28 tolerated(0.14) benign(0.02) TCGA-D3-A8GQ-06 8 24324468 24324468 G A ADAM7 Silent p.G182G 0.27 TCGA-D3-A8GQ-06 8 26614205 26614205 G A ADRA1A Intron 0.40 TCGA-D3-A8GQ-06 8 26722238 26722238 G A ADRA1A Silent p.S83S 0.27 TCGA-D3-A8GQ-06 8 27094405 27094405 C T STMN4 Silent p.E203E 0.39 TCGA-D3-A8GQ-06 8 27364409 27364409 C T EPHX2 Silent p.I186I 0.31 TCGA-D3-A8GQ-06 8 27455691 27455691 G A CLU 3'UTR 0.36 TCGA-D3-A8GQ-06 8 2815295 2815295 C T CSMD1 Missense_Mutation p.G3246D 0.33 possibly_damaging(0.897) TCGA-D3-A8GQ-06 8 2820068 2820068 G A CSMD1 Missense_Mutation p.S3183F 0.24 benign(0.182) TCGA-D3-A8GQ-06 8 2855686 2855686 C T CSMD1 Missense_Mutation p.G2742R 0.31 probably_damaging(1) TCGA-D3-A8GQ-06 8 30695476 30695476 C T TEX15 Missense_Mutation p.R2392K 0.28 tolerated(0.25) benign(0.018) TCGA-D3-A8GQ-06 8 30701916 30701916 C T TEX15 Missense_Mutation p.E1540K 0.23 tolerated(0.41) benign(0.012) TCGA-D3-A8GQ-06 8 3076812 3076812 G A CSMD1 Missense_Mutation p.S1546F 0.22 probably_damaging(0.999) TCGA-D3-A8GQ-06 8 3200887 3200887 G A CSMD1 Missense_Mutation p.S1187F 0.19 probably_damaging(0.999) TCGA-D3-A8GQ-06 8 39022606 39022606 G A ADAM32 Missense_Mutation p.E242K 0.29 tolerated(1) benign(0.005) TCGA-D3-A8GQ-06 8 39785557 39785557 G A IDO1 Silent p.L355L 0.24 TCGA-D3-A8GQ-06 8 42234568 42234568 C T DKK4 5'UTR 0.27 TCGA-D3-A8GQ-06 8 48697727 48697727 G A PRKDC Missense_Mutation p.P3684L 0.18 possibly_damaging(0.527) TCGA-D3-A8GQ-06 8 54147479 54147479 G A OPRK1 Silent p.T150T 0.36 TCGA-D3-A8GQ-06 8 55537568 55537568 C T RP1 Nonsense_Mutation p.R376* 0.22 TCGA-D3-A8GQ-06 8 55542485 55542485 T C RP1 Silent p.L2015L 0.31 TCGA-D3-A8GQ-06 8 57358433 57358433 C T PENK Missense_Mutation p.S27N 0.18 tolerated(0.19) benign(0.021) TCGA-D3-A8GQ-06 8 59851918 59851918 G A TOX Silent p.I118I 0.28 TCGA-D3-A8GQ-06 8 61757450 61757450 C T CHD7 Silent p.S1626S 0.27 TCGA-D3-A8GQ-06 8 62371063 62371063 G A CLVS1 Silent p.S313S 0.43 TCGA-D3-A8GQ-06 8 65537096 65537096 C T CYP7B1 Silent p.R41R 0.41 TCGA-D3-A8GQ-06 8 6612621 6612621 C T AGPAT5 Silent p.I265I 0.32 TCGA-D3-A8GQ-06 8 6782323 6782323 C T DEFA6 3'UTR 0.37 TCGA-D3-A8GQ-06 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.36 TCGA-D3-A8GQ-06 8 73849429 73849429 C T KCNB2 Silent p.F613F 0.29 TCGA-D3-A8GQ-06 8 73850121 73850121 C T KCNB2 Missense_Mutation p.P844L 0.21 tolerated_low_confidence(0.66) benign(0) TCGA-D3-A8GQ-06 8 75156810 75156810 G A JPH1 Missense_Mutation p.P620L 0.26 tolerated(0.41) benign(0.001) TCGA-D3-A8GQ-06 8 75761461 75761461 G A PI15 Silent p.T250T 0.29 TCGA-D3-A8GQ-06 8 75761462 75761462 T A PI15 Missense_Mutation p.S251T 0.28 tolerated(0.07) benign(0.004) TCGA-D3-A8GQ-06 8 77763268 77763268 C T ZFHX4 Missense_Mutation p.P1371S 0.33 benign(0) TCGA-D3-A8GQ-06 8 77763759 77763759 C T ZFHX4 Silent p.F1534F 0.48 TCGA-D3-A8GQ-06 8 77766120 77766120 C T ZFHX4 Silent p.F2321F 0.34 TCGA-D3-A8GQ-06 8 77767220 77767220 C T ZFHX4 Missense_Mutation p.S2688L 0.21 probably_damaging(0.975) TCGA-D3-A8GQ-06 8 77776596 77776596 C T ZFHX4 Missense_Mutation p.S3549F 0.29 probably_damaging(0.992) TCGA-D3-A8GQ-06 8 80553698 80553698 C T STMN2 Silent p.A67A 0.30 TCGA-D3-A8GQ-06 8 82665469 82665469 G A CHMP4C Missense_Mutation p.E121K 0.36 tolerated(0.72) benign(0.006) TCGA-D3-A8GQ-06 8 87162381 87162381 C T ATP6V0D2 Missense_Mutation p.S227F 0.31 deleterious(0) probably_damaging(0.92) TCGA-D3-A8GQ-06 8 87163693 87163693 A G ATP6V0D2 Splice_Site p.X273_splice 0.40 TCGA-D3-A8GQ-06 8 87242134 87242134 G A SLC7A13 Missense_Mutation p.P125S 0.35 tolerated(0.51) benign(0.034) TCGA-D3-A8GQ-06 8 8749176 8749176 C T MFHAS1 Missense_Mutation p.A465T 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GQ-06 8 87588250 87588250 C T CNGB3 Missense_Mutation p.E738K 0.28 tolerated(0.48) benign(0.03) TCGA-D3-A8GQ-06 8 89086897 89086897 C T MMP16 Silent p.R386R 0.31 TCGA-D3-A8GQ-06 8 91054995 91054995 C T DECR1 Silent p.F235F 0.32 TCGA-D3-A8GQ-06 8 94746441 94746441 C T RBM12B Missense_Mutation p.R733Q 0.30 tolerated_low_confidence(0.1) probably_damaging(0.978) TCGA-D3-A8GQ-06 8 95164286 95164286 G A CDH17 Missense_Mutation p.P536S 0.25 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GQ-06 8 95523649 95523649 G A KIAA1429 Missense_Mutation p.R1052C 0.28 tolerated(0.14) probably_damaging(0.961) TCGA-D3-A8GQ-06 8 95680203 95680203 C T ESRP1 Missense_Mutation p.L320F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GQ-06 9 104048435 104048435 C T LPPR1 Missense_Mutation p.S101F 0.28 deleterious(0.05) benign(0.062) TCGA-D3-A8GQ-06 9 106901574 106901574 A G SMC2 Missense_Mutation p.K1191R 0.23 tolerated_low_confidence(0.09) unknown(0) TCGA-D3-A8GQ-06 9 107298321 107298321 C T OR13C3 Missense_Mutation p.M258I 0.31 tolerated(1) benign(0.02) TCGA-D3-A8GQ-06 9 111618083 111618083 G A ACTL7B Missense_Mutation p.P43L 0.32 tolerated(0.2) benign(0.255) TCGA-D3-A8GQ-06 9 113168806 113168806 C T SVEP1 Missense_Mutation p.G3025E 0.34 probably_damaging(0.98) TCGA-D3-A8GQ-06 9 113170381 113170381 T G SVEP1 Missense_Mutation p.K2500T 0.30 benign(0.021) TCGA-D3-A8GQ-06 9 113459720 113459720 C T MUSK Missense_Mutation p.S201F 0.35 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GQ-06 9 113496641 113496641 G A MUSK Missense_Mutation p.E247K 0.40 tolerated(0.23) probably_damaging(0.999) TCGA-D3-A8GQ-06 9 113510070 113510070 C T MUSK Silent p.I301I 0.31 TCGA-D3-A8GQ-06 9 116155877 116155877 G A ALAD 5'UTR 0.34 TCGA-D3-A8GQ-06 9 116835280 116835280 G A AMBP Missense_Mutation p.L161F 0.29 deleterious(0.01) possibly_damaging(0.452) TCGA-D3-A8GQ-06 9 116994103 116994103 G A COL27A1 Missense_Mutation p.G841E 0.24 unknown(0) TCGA-D3-A8GQ-06 9 116999284 116999284 C T COL27A1 Silent p.F881F 0.38 TCGA-D3-A8GQ-06 9 117072969 117072969 C T COL27A1 Silent p.F1859F 0.49 TCGA-D3-A8GQ-06 9 117553068 117553068 C T TNFSF15 Silent p.L140L 0.22 TCGA-D3-A8GQ-06 9 117666331 117666331 C T TNFSF8 Silent p.L195L 0.33 TCGA-D3-A8GQ-06 9 119116022 119116022 C T PAPPA Nonsense_Mutation p.Q1433* 0.22 TCGA-D3-A8GQ-06 9 119158991 119158991 C T PAPPA 3'UTR 0.45 TCGA-D3-A8GQ-06 9 119737601 119737601 C T ASTN2 Missense_Mutation p.G541D 0.30 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GQ-06 9 119802097 119802097 C T ASTN2 Splice_Site p.X424_splice 0.23 TCGA-D3-A8GQ-06 9 120474851 120474851 C T TLR4 Missense_Mutation p.L149F 0.30 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GQ-06 9 121929911 121929911 G A BRINP1 Silent p.F579F 0.27 TCGA-D3-A8GQ-06 9 123667264 123667264 C T TRAF1 3'UTR 0.33 TCGA-D3-A8GQ-06 9 123797108 123797108 G A C5 Missense_Mutation p.P186L 0.22 tolerated(0.06) probably_damaging(0.959) TCGA-D3-A8GQ-06 9 125240034 125240034 G A OR1J1 Missense_Mutation p.P58S 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 9 125273485 125273485 C T OR1J2 Silent p.I135I 0.31 TCGA-D3-A8GQ-06 9 125273509 125273509 C T OR1J2 Silent p.F143F 0.28 TCGA-D3-A8GQ-06 9 125377571 125377571 G A OR1Q1 Missense_Mutation p.M185I 0.35 deleterious(0.03) probably_damaging(0.977) TCGA-D3-A8GQ-06 9 125438138 125438138 C T OR1L3 Missense_Mutation p.H244Y 0.31 deleterious(0) possibly_damaging(0.582) TCGA-D3-A8GQ-06 9 126132589 126132589 C T CRB2 Silent p.V419V 0.24 TCGA-D3-A8GQ-06 9 130210655 130210655 G A RPL12 Nonsense_Mutation p.R114* 0.29 TCGA-D3-A8GQ-06 9 130988338 130988338 C T DNM1 Intron 0.22 TCGA-D3-A8GQ-06 9 131191046 131191046 C T CERCAM Silent p.P299P 0.20 TCGA-D3-A8GQ-06 9 131191047 131191047 C T CERCAM Missense_Mutation p.R300C 0.20 deleterious(0) benign(0.39) TCGA-D3-A8GQ-06 9 134386855 134386855 G T POMT1 Splice_Site p.X351_splice 0.17 TCGA-D3-A8GQ-06 9 137671985 137671985 G A COL5A1 Missense_Mutation p.G808D 0.31 unknown(0) TCGA-D3-A8GQ-06 9 138649178 138649178 C T KCNT1 Missense_Mutation p.P237L 0.26 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GQ-06 9 138671262 138671262 C T KCNT1 Silent p.F929F 0.28 TCGA-D3-A8GQ-06 9 139250902 139250902 C T GPSM1 Missense_Mutation p.P574L 0.37 deleterious(0.01) probably_damaging(0.963) TCGA-D3-A8GQ-06 9 139311498 139311498 G A PMPCA Silent p.R243R 0.23 TCGA-D3-A8GQ-06 9 139748522 139748522 C T MAMDC4 Silent p.L222L 0.34 TCGA-D3-A8GQ-06 9 14775943 14775943 G T FREM1 Missense_Mutation p.F1567L 0.24 deleterious(0) probably_damaging(0.947) TCGA-D3-A8GQ-06 9 14857664 14857664 C T FREM1 Missense_Mutation p.E239K 0.30 deleterious(0.01) benign(0.265) TCGA-D3-A8GQ-06 9 17747095 17747095 G A SH3GL2 Missense_Mutation p.G26E 0.24 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 9 26998031 26998031 G T LRRC19 Missense_Mutation p.S97Y 0.18 deleterious(0) possibly_damaging(0.497) TCGA-D3-A8GQ-06 9 27948839 27948839 G A LINGO2 3'UTR 0.34 TCGA-D3-A8GQ-06 9 32405504 32405504 C T ACO1 5'UTR 0.29 TCGA-D3-A8GQ-06 9 32631906 32631906 G A TAF1L Silent p.F1224F 0.34 TCGA-D3-A8GQ-06 9 32632916 32632916 G A TAF1L Missense_Mutation p.R888C 0.35 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 9 33675805 33675805 C T PTENP1 RNA 0.23 TCGA-D3-A8GQ-06 9 33796705 33796705 C A PRSS3 Silent p.L92L 0.32 TCGA-D3-A8GQ-06 9 34493318 34493318 G A DNAI1 Missense_Mutation p.E270K 0.22 tolerated(0.16) benign(0.248) TCGA-D3-A8GQ-06 9 34622372 34622372 G A ARID3C Silent p.F340F 0.30 TCGA-D3-A8GQ-06 9 35093155 35093155 G A PIGO Silent p.L331L 0.22 TCGA-D3-A8GQ-06 9 37015059 37015059 C T PAX5 Silent p.R115R 0.27 TCGA-D3-A8GQ-06 9 39078403 39078403 T C CNTNAP3 Missense_Mutation p.R1242G 0.13 tolerated(0.08) benign(0.001) TCGA-D3-A8GQ-06 9 39103859 39103859 G A CNTNAP3 Silent p.F806F 0.28 TCGA-D3-A8GQ-06 9 6610214 6610214 C T GLDC Missense_Mutation p.E205K 0.20 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 9 74300162 74300162 A T TMEM2 Missense_Mutation p.V1368D 0.28 tolerated_low_confidence(0.62) benign(0.017) TCGA-D3-A8GQ-06 9 74865779 74865779 C T GDA 3'Flank 0.39 TCGA-D3-A8GQ-06 9 77257355 77257355 G A RORB Silent p.K87K 0.24 TCGA-D3-A8GQ-06 9 79322610 79322610 G A PRUNE2 Missense_Mutation p.S1527L 0.23 tolerated(0.09) benign(0.006) TCGA-D3-A8GQ-06 9 79520917 79520917 G A PRUNE2 5'UTR 0.41 TCGA-D3-A8GQ-06 9 80144078 80144078 C T GNA14 Silent p.T72T 0.30 TCGA-D3-A8GQ-06 9 84532961 84532961 C T SPATA31D5P RNA 0.23 TCGA-D3-A8GQ-06 9 85612042 85612042 C T RASEF Splice_Site p.X602_splice 0.25 TCGA-D3-A8GQ-06 9 86322420 86322420 G A UBQLN1 Nonsense_Mutation p.Q59* 0.31 TCGA-D3-A8GQ-06 9 86322421 86322421 G A UBQLN1 Silent p.V58V 0.31 TCGA-D3-A8GQ-06 9 8636728 8636728 C T PTPRD Missense_Mutation p.G61R 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GQ-06 9 90497811 90497811 G A SPATA31E1 Missense_Mutation p.G2E 0.27 probably_damaging(0.969) TCGA-D3-A8GQ-06 9 90500331 90500331 G A SPATA31E1 Missense_Mutation p.R310K 0.26 tolerated(1) benign(0.054) TCGA-D3-A8GQ-06 9 95021189 95021189 G A IARS Missense_Mutation p.P655S 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 9 95403040 95403040 G A IPPK Silent p.A196A 0.35 TCGA-D3-A8GQ-06 9 95608780 95608780 G A ZNF484 Silent p.L765L 0.30 TCGA-D3-A8GQ-06 9 95838211 95838211 G A SUSD3 Silent p.K78K 0.41 TCGA-D3-A8GQ-06 9 96081441 96081441 C T C9orf129 Nonsense_Mutation p.W127* 0.25 TCGA-D3-A8GQ-06 9 99799627 99799627 C T CTSV Silent p.R101R 0.27 TCGA-D3-A8GQ-06 X 101091729 101091729 G A NXF5 Intron 0.59 TCGA-D3-A8GQ-06 X 104440318 104440318 G A IL1RAPL2 Missense_Mutation p.D82N 0.49 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GQ-06 X 105450269 105450269 C T MUM1L1 Missense_Mutation p.P282S 0.58 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GQ-06 X 110459733 110459733 C T PAK3 Missense_Mutation p.R534C 0.53 tolerated(0.25) benign(0.012) TCGA-D3-A8GQ-06 X 117527060 117527060 C T WDR44 Missense_Mutation p.L218F 0.62 tolerated_low_confidence(0.67) benign(0.002) TCGA-D3-A8GQ-06 X 118220673 118220673 G A KIAA1210 Missense_Mutation p.P1507L 0.75 tolerated(0.05) possibly_damaging(0.882) TCGA-D3-A8GQ-06 X 12712466 12712466 C T FRMPD4 Missense_Mutation p.P276S 0.54 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GQ-06 X 127185822 127185822 G A ACTRT1 Silent p.L122L 0.57 TCGA-D3-A8GQ-06 X 12905971 12905971 C T TLR7 Missense_Mutation p.H782Y 0.56 deleterious(0.01) benign(0.141) TCGA-D3-A8GQ-06 X 130419276 130419276 C T IGSF1 Missense_Mutation p.A182T 0.57 deleterious(0.03) benign(0.108) TCGA-D3-A8GQ-06 X 132160019 132160019 C T USP26 Missense_Mutation p.G744S 0.68 tolerated(0.66) benign(0.017) TCGA-D3-A8GQ-06 X 132351262 132351262 C T TFDP3 Silent p.T342T 0.70 TCGA-D3-A8GQ-06 X 135431282 135431282 C T GPR112 Missense_Mutation p.S1806F 0.49 deleterious(0) possibly_damaging(0.529) TCGA-D3-A8GQ-06 X 135591328 135591328 C T HTATSF1 Missense_Mutation p.L305F 0.51 deleterious(0.02) possibly_damaging(0.736) TCGA-D3-A8GQ-06 X 138878583 138878583 T C ATP11C Missense_Mutation p.N355S 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GQ-06 X 139038368 139038368 G A CXorf66 Missense_Mutation p.S258F 0.54 deleterious(0) benign(0.138) TCGA-D3-A8GQ-06 X 140785745 140785745 C T SPANXD Silent p.R57R 0.59 TCGA-D3-A8GQ-06 X 140983164 140983164 G A MAGEC3 Missense_Mutation p.G340E 0.62 tolerated(0.11) benign(0.097) TCGA-D3-A8GQ-06 X 140995349 140995349 C T MAGEC1 Missense_Mutation p.S720F 0.60 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A8GQ-06 X 14592516 14592516 G A GLRA2 Silent p.T88T 0.59 TCGA-D3-A8GQ-06 X 149013428 149013428 C T MAGEA8 Nonsense_Mutation p.Q128* 0.56 TCGA-D3-A8GQ-06 X 151817756 151817756 C T GABRQ Silent p.F190F 0.66 TCGA-D3-A8GQ-06 X 153224146 153224146 G A HCFC1 Silent p.I559I 0.71 TCGA-D3-A8GQ-06 X 18195770 18195770 C T BEND2 Missense_Mutation p.E517K 0.62 tolerated(0.18) benign(0.173) TCGA-D3-A8GQ-06 X 23804021 23804021 C T SAT1 3'UTR 0.67 TCGA-D3-A8GQ-06 X 2928180 2928180 C T ARSH Missense_Mutation p.P68S 0.56 tolerated(0.12) possibly_damaging(0.891) TCGA-D3-A8GQ-06 X 3229460 3229460 T A MXRA5 Nonsense_Mutation p.K2262* 0.58 TCGA-D3-A8GQ-06 X 3238709 3238709 G A MXRA5 Missense_Mutation p.P1673S 0.64 tolerated(0.13) benign(0.01) TCGA-D3-A8GQ-06 X 34148687 34148687 G A FAM47A Missense_Mutation p.S570L 0.56 tolerated(0.57) probably_damaging(0.947) TCGA-D3-A8GQ-06 X 34150114 34150114 C T FAM47A Silent p.Q94Q 0.57 TCGA-D3-A8GQ-06 X 34962472 34962472 G A FAM47B Silent p.L508L 0.54 TCGA-D3-A8GQ-06 X 37026518 37026518 C T FAM47C Missense_Mutation p.S12F 0.50 deleterious(0.04) possibly_damaging(0.838) TCGA-D3-A8GQ-06 X 37028948 37028948 C T FAM47C Missense_Mutation p.S822F 0.62 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 X 41203496 41203496 C T DDX3X Missense_Mutation p.S290L 0.57 deleterious(0.02) possibly_damaging(0.613) TCGA-D3-A8GQ-06 X 47308027 47308027 T A ZNF41 Missense_Mutation p.K381I 0.63 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GQ-06 X 51151178 51151178 C T CXorf67 Missense_Mutation p.S437F 0.56 tolerated(0.06) probably_damaging(0.955) TCGA-D3-A8GQ-06 X 55116953 55116953 G A PAGE2 Missense_Mutation p.E35K 0.64 tolerated(0.24) probably_damaging(0.997) TCGA-D3-A8GQ-06 X 5811486 5811486 G A NLGN4X Missense_Mutation p.S608L 0.59 tolerated(0.07) probably_damaging(0.942) TCGA-D3-A8GQ-06 X 67937888 67937888 G A STARD8 Missense_Mutation p.D378N 0.50 tolerated(0.05) benign(0.004) TCGA-D3-A8GQ-06 X 69458210 69458210 C T AWAT1 Silent p.F203F 0.76 TCGA-D3-A8GQ-06 X 70145656 70145656 G A SLC7A3 3'UTR 0.50 TCGA-D3-A8GQ-06 X 70384039 70384039 C T NLGN3 Silent p.L258L 0.73 TCGA-D3-A8GQ-06 X 70467328 70467328 C T ZMYM3 Silent p.G727G 0.75 TCGA-D3-A8GQ-06 X 70787569 70787569 C T OGT Missense_Mutation p.L937F 0.69 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GQ-06 X 70787583 70787583 C A OGT Silent p.T941T 0.75 TCGA-D3-A8GQ-06 X 71425613 71425613 C T ERCC6L Missense_Mutation p.E1002K 0.55 tolerated(0.15) benign(0.013) TCGA-D3-A8GQ-06 X 71822991 71822991 C T PHKA1 Silent p.K965K 0.46 TCGA-D3-A8GQ-06 X 77245107 77245107 C T ATP7A Missense_Mutation p.S330F 0.61 deleterious(0.04) benign(0.094) TCGA-D3-A8GQ-06 X 77528862 77528862 G A CYSLTR1 Missense_Mutation p.P128S 0.60 deleterious(0) probably_damaging(1) TCGA-D3-A8GQ-06 X 78427256 78427256 C T GPR174 Missense_Mutation p.P251L 0.58 tolerated(1) probably_damaging(1) TCGA-D3-A8GQ-06 X 79286424 79286424 C T TBX22 Silent p.I459I 0.54 TCGA-D3-A8GQ-06 X 83357092 83357092 C T RPS6KA6 Missense_Mutation p.G577R 0.55 deleterious(0.03) possibly_damaging(0.884) TCGA-D3-A8GQ-06 X 9001111 9001111 C T FAM9B 5'UTR 0.61 TCGA-D3-A8GQ-06 Y 16942353 16942353 C T NLGN4Y Missense_Mutation p.L519F 0.65 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GR-06 10 102763757 102763757 C T LZTS2 Missense_Mutation p.S301F 0.45 tolerated(0.41) probably_damaging(0.931) TCGA-D3-A8GR-06 10 105197801 105197801 T G PDCD11 Missense_Mutation p.V1292G 0.40 tolerated(0.39) benign(0.044) TCGA-D3-A8GR-06 10 113928682 113928682 A C GPAM Missense_Mutation p.F275V 0.24 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 10 116062102 116062102 G A AFAP1L2 Missense_Mutation p.L476F 0.35 tolerated(1) benign(0.011) TCGA-D3-A8GR-06 10 123276970 123276970 C T FGFR2 Intron 0.30 TCGA-D3-A8GR-06 10 123843107 123843107 G A TACC2 Silent p.K364K 0.52 TCGA-D3-A8GR-06 10 124214490 124214490 C T ARMS2 Missense_Mutation p.P83S 0.46 tolerated_low_confidence(0.05) benign(0.02) TCGA-D3-A8GR-06 10 125539744 125539744 T A CPXM2 Missense_Mutation p.N306I 0.37 deleterious(0) probably_damaging(0.94) TCGA-D3-A8GR-06 10 17641335 17641335 T A PTPLA Missense_Mutation p.T187S 0.57 tolerated(0.06) probably_damaging(0.998) TCGA-D3-A8GR-06 10 47087418 47087418 C T NPY4R Missense_Mutation p.T212I 0.15 tolerated(0.18) benign(0.002) TCGA-D3-A8GR-06 10 61956380 61956380 C T ANK3 Missense_Mutation p.G565R 0.32 probably_damaging(1) TCGA-D3-A8GR-06 10 69748468 69748468 G A HERC4 Silent p.F586F 0.40 TCGA-D3-A8GR-06 10 75006490 75006490 G C DNAJC9 Missense_Mutation p.Q93E 0.42 tolerated(0.35) benign(0.005) TCGA-D3-A8GR-06 10 7747104 7747104 C T ITIH2 Missense_Mutation p.P40S 0.54 deleterious(0.02) benign(0.15) TCGA-D3-A8GR-06 10 85984361 85984361 C T LRIT2 Missense_Mutation p.R207H 0.24 tolerated(0.09) possibly_damaging(0.74) TCGA-D3-A8GR-06 10 88677063 88677063 T C BMPR1A Missense_Mutation p.M283T 0.42 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GR-06 10 95372929 95372929 G A PDE6C Silent p.T149T 0.31 TCGA-D3-A8GR-06 10 95719243 95719243 C T PIPSL RNA 0.38 TCGA-D3-A8GR-06 11 108383502 108383502 G A EXPH5 Missense_Mutation p.P911L 0.62 tolerated(0.42) benign(0.054) TCGA-D3-A8GR-06 11 118391570 118391571 AG T KMT2A Frame_Shift_Del p.K3828Ifs*31 0.42 TCGA-D3-A8GR-06 11 121039445 121039445 A G TECTA Missense_Mutation p.Y1937C 0.72 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GR-06 11 1213419 1213419 G A MUC5AC RNA 0.14 TCGA-D3-A8GR-06 11 12923619 12923619 G A TEAD1 Missense_Mutation p.G278R 0.78 tolerated(0.05) benign(0.012) TCGA-D3-A8GR-06 11 12923620 12923620 G T TEAD1 Missense_Mutation p.G278V 0.78 deleterious(0.01) benign(0.08) TCGA-D3-A8GR-06 11 13721892 13721892 C T FAR1 Missense_Mutation p.P73L 0.87 deleterious(0) benign(0.341) TCGA-D3-A8GR-06 11 46568718 46568718 G C AMBRA1 Nonsense_Mutation p.S108* 0.56 TCGA-D3-A8GR-06 11 48510356 48510356 G A OR4A47 Silent p.R4R 0.66 TCGA-D3-A8GR-06 11 49186323 49186323 T G FOLH1 Silent p.G458G 0.79 TCGA-D3-A8GR-06 11 4936045 4936045 G A OR51G2 Silent p.F283F 0.73 TCGA-D3-A8GR-06 11 5462045 5462045 C T OR51I1 Missense_Mutation p.E234K 0.79 tolerated(0.06) benign(0.059) TCGA-D3-A8GR-06 11 5529648 5529648 G T UBQLN3 Missense_Mutation p.P381T 0.80 tolerated(0.18) benign(0.229) TCGA-D3-A8GR-06 11 57193516 57193520 TAAAG - SLC43A3 Nonsense_Mutation p.Y42* 0.48 TCGA-D3-A8GR-06 11 60641215 60641215 G A ZP1 Silent p.L513L 0.76 TCGA-D3-A8GR-06 11 61079489 61079489 G A DDB1 Missense_Mutation p.R713C 0.71 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GR-06 11 61290700 61290700 C T SYT7 Silent p.E393E 0.70 TCGA-D3-A8GR-06 11 7818442 7818442 G A OR5P2 Silent p.I16I 0.80 TCGA-D3-A8GR-06 11 92623974 92623974 C T FAT3 Missense_Mutation p.H4489Y 0.67 benign(0.001) TCGA-D3-A8GR-06 12 101702100 101702100 C T UTP20 Silent p.V711V 0.41 TCGA-D3-A8GR-06 12 102045168 102045168 G A MYBPC1 Missense_Mutation p.G483E 0.34 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GR-06 12 112480892 112480892 C T NAA25 Missense_Mutation p.E792K 0.43 deleterious(0.01) benign(0.094) TCGA-D3-A8GR-06 12 114395713 114395713 T C RBM19 Silent p.E238E 0.40 TCGA-D3-A8GR-06 12 124497116 124497116 C T ZNF664 Missense_Mutation p.P142L 0.37 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GR-06 12 124950778 124950778 G A NCOR2 Missense_Mutation p.P216S 0.41 unknown(0) TCGA-D3-A8GR-06 12 13241842 13241842 C T GSG1 Silent p.G122G 0.42 TCGA-D3-A8GR-06 12 14769600 14769600 G A GUCY2C Silent p.F979F 0.39 TCGA-D3-A8GR-06 12 25671844 25671844 G A IFLTD1 Silent p.P358P 0.40 TCGA-D3-A8GR-06 12 27475077 27475077 G A STK38L Missense_Mutation p.E393K 0.39 tolerated(0.09) benign(0.015) TCGA-D3-A8GR-06 12 300268 300268 C T SLC6A12 Missense_Mutation p.G604E 0.27 tolerated_low_confidence(0.21) benign(0.002) TCGA-D3-A8GR-06 12 300269 300269 C T SLC6A12 Missense_Mutation p.G604R 0.27 tolerated_low_confidence(0.19) benign(0.003) TCGA-D3-A8GR-06 12 32955374 32955374 C T PKP2 Silent p.R754R 0.35 TCGA-D3-A8GR-06 12 3782634 3782634 C T EFCAB4B Missense_Mutation p.E217K 0.39 tolerated(0.15) possibly_damaging(0.713) TCGA-D3-A8GR-06 12 3782644 3782644 C T EFCAB4B Silent p.E213E 0.38 TCGA-D3-A8GR-06 12 45105177 45105177 C T NELL2 Missense_Mutation p.D413N 0.42 tolerated(0.34) benign(0.008) TCGA-D3-A8GR-06 12 4543396 4543396 G A FGF6 Silent p.F204F 0.30 TCGA-D3-A8GR-06 12 461487 461487 A C KDM5A Missense_Mutation p.C345G 0.33 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GR-06 12 46245715 46245715 C T ARID2 Missense_Mutation p.S1270F 0.50 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-D3-A8GR-06 12 48132029 48132029 C T RAPGEF3 Missense_Mutation p.R843K 0.52 tolerated(0.06) possibly_damaging(0.508) TCGA-D3-A8GR-06 12 49432307 49432307 G C KMT2D Missense_Mutation p.N2944K 0.40 benign(0.275) TCGA-D3-A8GR-06 12 49579577 49579577 G C TUBA1A Missense_Mutation p.T191S 0.40 deleterious_low_confidence(0.01) benign(0.398) TCGA-D3-A8GR-06 12 49718121 49718121 C G TROAP Intron 0.78 TCGA-D3-A8GR-06 12 50027858 50027858 G A PRPF40B Silent p.L265L 0.42 TCGA-D3-A8GR-06 12 51116998 51116998 C T DIP2B Silent p.I1060I 0.41 TCGA-D3-A8GR-06 12 53069401 53069401 G A KRT1 Missense_Mutation p.S504F 0.42 deleterious(0.01) unknown(0) TCGA-D3-A8GR-06 12 53205573 53205573 C T KRT4 Silent p.Q217Q 0.46 TCGA-D3-A8GR-06 12 53681845 53681845 C T ESPL1 Silent p.S1422S 0.49 TCGA-D3-A8GR-06 12 55252048 55252048 C T MUCL1 3'UTR 0.44 TCGA-D3-A8GR-06 12 57111310 57111310 G A NACA Intron 0.51 TCGA-D3-A8GR-06 12 58218452 58218452 G A CTDSP2 Intron 0.43 TCGA-D3-A8GR-06 12 6772291 6772291 C T ING4 5'UTR 0.50 TCGA-D3-A8GR-06 12 7970607 7970607 A G SLC2A14 Silent p.F388F 0.28 TCGA-D3-A8GR-06 12 81647354 81647354 C T ACSS3 Nonsense_Mutation p.R634* 0.32 TCGA-D3-A8GR-06 12 81657092 81657092 C T PPFIA2 Missense_Mutation p.M1211I 0.44 deleterious_low_confidence(0.01) benign(0.034) TCGA-D3-A8GR-06 13 25671659 25671659 C T PABPC3 Silent p.F441F 0.56 TCGA-D3-A8GR-06 13 25671660 25671660 C T PABPC3 Nonsense_Mutation p.Q442* 0.56 TCGA-D3-A8GR-06 13 28636039 28636039 G A FLT3 Silent p.S111S 0.43 TCGA-D3-A8GR-06 13 29598770 29598770 G A MTUS2 5'UTR 0.73 TCGA-D3-A8GR-06 13 43155328 43155328 A T TNFSF11 Missense_Mutation p.N96Y 0.73 deleterious(0.01) possibly_damaging(0.794) TCGA-D3-A8GR-06 13 99520610 99520610 G A DOCK9 Missense_Mutation p.P989S 0.64 tolerated(0.4) benign(0.008) TCGA-D3-A8GR-06 14 100795145 100795145 C T SLC25A47 Missense_Mutation p.S137L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-D3-A8GR-06 14 102027918 102027918 C T DIO3 Missense_Mutation p.R29C 0.37 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D3-A8GR-06 14 103442119 103442119 G A CDC42BPB Missense_Mutation p.S470F 0.44 deleterious(0) benign(0.037) TCGA-D3-A8GR-06 14 103958365 103958365 C T MARK3 Missense_Mutation p.T613I 0.31 deleterious(0.01) benign(0.033) TCGA-D3-A8GR-06 14 106791247 106791247 G A IGHV3-30 Silent p.L37L 0.14 TCGA-D3-A8GR-06 14 20872830 20872830 T A TEP1 Silent p.R324R 0.38 TCGA-D3-A8GR-06 14 20925796 20925796 C T APEX1 3'UTR 0.26 TCGA-D3-A8GR-06 14 21945130 21945130 C T RAB2B 5'UTR 0.45 TCGA-D3-A8GR-06 14 23855141 23855141 G A MYH6 Missense_Mutation p.S1720F 0.33 deleterious(0) possibly_damaging(0.781) TCGA-D3-A8GR-06 14 23896993 23896993 G A MYH7 Silent p.F563F 0.42 TCGA-D3-A8GR-06 14 28734141 28734141 C T BNIP3P1 RNA 0.34 TCGA-D3-A8GR-06 14 33292014 33292014 G A AKAP6 Silent p.K1665K 0.44 TCGA-D3-A8GR-06 14 35761608 35761608 C T PSMA6 5'UTR 0.48 TCGA-D3-A8GR-06 14 50120907 50120907 G A POLE2 Missense_Mutation p.P367S 0.42 tolerated(0.22) possibly_damaging(0.687) TCGA-D3-A8GR-06 14 59014653 59014653 G A KIAA0586 Missense_Mutation p.G1632R 0.21 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D3-A8GR-06 14 59757983 59757983 C T DAAM1 Missense_Mutation p.P78S 0.21 deleterious(0.01) unknown(0) TCGA-D3-A8GR-06 14 62567363 62567363 G A SYT16 Missense_Mutation p.E626K 0.47 tolerated(0.15) benign(0.019) TCGA-D3-A8GR-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.35 TCGA-D3-A8GR-06 14 65207879 65207879 C T PLEKHG3 Silent p.H492H 0.41 TCGA-D3-A8GR-06 14 70634565 70634565 C T SLC8A3 Missense_Mutation p.G192E 0.43 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GR-06 14 74754922 74754922 A T ABCD4 Missense_Mutation p.V516E 0.26 tolerated(0.11) possibly_damaging(0.566) TCGA-D3-A8GR-06 14 74824602 74824602 G A VRTN Silent p.E372E 0.37 TCGA-D3-A8GR-06 14 93673517 93673517 C T UBR7 5'UTR 0.60 TCGA-D3-A8GR-06 14 94044288 94044288 C T UNC79 Missense_Mutation p.P594L 0.38 deleterious(0.01) possibly_damaging(0.526) TCGA-D3-A8GR-06 14 96152912 96152912 C T TCL1B Silent p.V36V 0.57 TCGA-D3-A8GR-06 15 20496745 20496745 C T CHEK2P2 RNA 0.16 TCGA-D3-A8GR-06 15 25213170 25213170 C T SNURF Missense_Mutation p.P68S 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.741) TCGA-D3-A8GR-06 15 33202729 33202729 G A FMN1 Silent p.F855F 0.50 TCGA-D3-A8GR-06 15 35530247 35530247 G A ANP32AP1 RNA 0.12 TCGA-D3-A8GR-06 15 42162720 42162720 C T SPTBN5 Missense_Mutation p.R1829Q 0.30 benign(0.049) TCGA-D3-A8GR-06 15 50899507 50899507 G A TRPM7 Silent p.L867L 0.49 TCGA-D3-A8GR-06 15 65347555 65347555 G A RASL12 Silent p.F161F 0.40 TCGA-D3-A8GR-06 15 65622998 65622998 G A IGDCC3 Missense_Mutation p.A548V 0.39 deleterious(0.04) benign(0.033) TCGA-D3-A8GR-06 15 67571839 67571839 C T IQCH Missense_Mutation p.P126S 0.32 tolerated(0.39) benign(0.085) TCGA-D3-A8GR-06 15 72120309 72120309 G A MYO9A Missense_Mutation p.L2367F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-D3-A8GR-06 15 72847687 72847687 G A ARIH1 Missense_Mutation p.E222K 0.36 tolerated(0.1) benign(0.032) TCGA-D3-A8GR-06 15 75042196 75042196 G A CYP1A2 Silent p.L39L 0.37 TCGA-D3-A8GR-06 15 78401613 78401613 G A CIB2 Nonsense_Mutation p.R104* 0.58 TCGA-D3-A8GR-06 15 78401614 78401614 G A CIB2 Silent p.P103P 0.57 TCGA-D3-A8GR-06 15 81235346 81235346 A T KIAA1199 Missense_Mutation p.N1254Y 0.34 tolerated(1) benign(0) TCGA-D3-A8GR-06 15 84286981 84286981 G A SH3GL3 Missense_Mutation p.G329E 0.32 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GR-06 15 85438304 85438304 G A SLC28A1 Silent p.R137R 0.46 TCGA-D3-A8GR-06 15 90210363 90210363 G A PLIN1 Missense_Mutation p.T338I 0.31 deleterious(0.01) benign(0.303) TCGA-D3-A8GR-06 16 1254238 1254238 G A CACNA1H Missense_Mutation p.R744Q 0.12 tolerated(1) benign(0.001) TCGA-D3-A8GR-06 16 1278587 1278587 A G TPSB2 3'UTR 0.80 TCGA-D3-A8GR-06 16 18586094 18586094 C T RP11-457I16.2 5'Flank 0.36 TCGA-D3-A8GR-06 16 19063038 19063038 C T TMC7 Missense_Mutation p.P591S 0.24 tolerated(0.75) benign(0.021) TCGA-D3-A8GR-06 16 2025844 2025844 G C TBL3 Silent p.R341R 0.29 TCGA-D3-A8GR-06 16 22579896 22579896 C T RP11-368J21.3 RNA 0.20 TCGA-D3-A8GR-06 16 23400376 23400376 G T COG7 Silent p.G726G 0.44 TCGA-D3-A8GR-06 16 23767735 23767735 C T CHP2 Missense_Mutation p.R127C 0.45 deleterious(0.04) benign(0.035) TCGA-D3-A8GR-06 16 28509486 28509486 C T APOBR Missense_Mutation p.R1014W 0.36 deleterious(0) unknown(0) TCGA-D3-A8GR-06 16 30490703 30490703 G A ITGAL Missense_Mutation p.S166N 0.23 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GR-06 16 46771936 46771936 G A MYLK3 Missense_Mutation p.P230S 0.67 tolerated(0.33) benign(0.015) TCGA-D3-A8GR-06 16 4774793 4774793 A G ANKS3 Silent p.A177A 0.22 TCGA-D3-A8GR-06 16 54966692 54966692 A C IRX5 Missense_Mutation p.T178P 0.56 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GR-06 16 56535359 56535359 G A BBS2 Silent p.I377I 0.33 TCGA-D3-A8GR-06 16 70172834 70172834 C T PDPR Missense_Mutation p.P408L 0.44 deleterious(0) possibly_damaging(0.631) TCGA-D3-A8GR-06 16 78064487 78064487 C T CLEC3A Nonsense_Mutation p.Q124* 0.47 TCGA-D3-A8GR-06 16 81134774 81134774 G A GCSH 5'Flank 0.59 TCGA-D3-A8GR-06 16 85936731 85936731 G A IRF8 Missense_Mutation p.R37Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GR-06 16 87717847 87717847 C T JPH3 Silent p.S420S 0.60 TCGA-D3-A8GR-06 16 89977617 89977617 G A TCF25 Missense_Mutation p.D668N 0.34 tolerated(1) benign(0.001) TCGA-D3-A8GR-06 17 10265579 10265579 G A MYH13 Missense_Mutation p.L121F 0.24 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GR-06 17 10265580 10265580 G A MYH13 Silent p.G120G 0.23 TCGA-D3-A8GR-06 17 10442549 10442549 C T MYH2 Silent p.L463L 0.36 TCGA-D3-A8GR-06 17 10544000 10544000 G A MYH3 Silent p.Y723Y 0.40 TCGA-D3-A8GR-06 17 10595252 10595252 G C SCO1 Missense_Mutation p.P198A 0.31 deleterious(0.01) possibly_damaging(0.871) TCGA-D3-A8GR-06 17 18069766 18069766 C T MYO15A Silent p.F3293F 0.47 TCGA-D3-A8GR-06 17 18707459 18707459 T C TVP23B Silent p.V157V 0.37 TCGA-D3-A8GR-06 17 19644448 19644448 C T ALDH3A1 Silent p.S255S 0.34 TCGA-D3-A8GR-06 17 28549063 28549063 G A SLC6A4 5'UTR 0.56 TCGA-D3-A8GR-06 17 29632605 29632605 A G EVI2B Missense_Mutation p.L8S 0.42 deleterious(0.03) probably_damaging(0.934) TCGA-D3-A8GR-06 17 37949117 37949117 C T IKZF3 Missense_Mutation p.G78E 0.44 tolerated(0.51) benign(0.005) TCGA-D3-A8GR-06 17 38652276 38652276 G A TNS4 Silent p.T134T 0.31 TCGA-D3-A8GR-06 17 38652277 38652277 G A TNS4 Missense_Mutation p.T134I 0.30 tolerated(0.24) benign(0.004) TCGA-D3-A8GR-06 17 39412328 39412328 G A KRTAP9-9 3'UTR 0.33 TCGA-D3-A8GR-06 17 42474954 42474954 G A GPATCH8 Silent p.P1497P 0.18 TCGA-D3-A8GR-06 17 49825070 49825070 C T CA10 Missense_Mutation p.E130K 0.46 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GR-06 17 5322847 5322847 G A NUP88 Missense_Mutation p.P42S 0.42 tolerated(0.42) benign(0.025) TCGA-D3-A8GR-06 17 5424312 5424312 C T NLRP1 Missense_Mutation p.M1268I 0.44 deleterious(0.03) benign(0.079) TCGA-D3-A8GR-06 17 60344578 60344578 G A TBC1D3P2 RNA 0.44 TCGA-D3-A8GR-06 17 63133620 63133620 C T RGS9 5'UTR 0.38 TCGA-D3-A8GR-06 17 72205441 72205442 - C RPL38 Frame_Shift_Ins p.G63Rfs*14 0.22 TCGA-D3-A8GR-06 17 72356332 72356332 G A BTBD17 Silent p.S46S 0.54 TCGA-D3-A8GR-06 17 7256763 7256763 G A KCTD11 Missense_Mutation p.E168K 0.40 tolerated(0.11) probably_damaging(0.986) TCGA-D3-A8GR-06 17 73059302 73059302 C T KCTD2 3'UTR 0.55 TCGA-D3-A8GR-06 17 7320646 7320646 C T NLGN2 Missense_Mutation p.T679I 0.14 deleterious(0) probably_damaging(0.986) TCGA-D3-A8GR-06 17 74774329 74774329 C T MFSD11 Silent p.L415L 0.38 TCGA-D3-A8GR-06 17 7662435 7662435 G A DNAH2 Missense_Mutation p.G814D 0.42 possibly_damaging(0.847) TCGA-D3-A8GR-06 17 7909963 7909963 C T GUCY2D Missense_Mutation p.P437S 0.47 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 17 80042446 80042446 G A FASN Missense_Mutation p.L1571F 0.56 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GR-06 17 80042447 80042447 G A FASN Silent p.S1570S 0.56 TCGA-D3-A8GR-06 17 80540786 80540786 C T FOXK2 Missense_Mutation p.T360I 0.38 tolerated(0.07) benign(0.318) TCGA-D3-A8GR-06 18 28713902 28713902 C T DSC1 Missense_Mutation p.G690R 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 18 28993170 28993170 G A DSG4 Missense_Mutation p.G931D 0.41 deleterious(0.01) benign(0.098) TCGA-D3-A8GR-06 18 29178629 29178629 C T TTR Silent p.P145P 0.34 TCGA-D3-A8GR-06 18 29453415 29453415 G A TRAPPC8 Silent p.G680G 0.43 TCGA-D3-A8GR-06 18 29488815 29488815 G A TRAPPC8 Missense_Mutation p.L342F 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GR-06 18 42529897 42529897 C T SETBP1 Missense_Mutation p.P198S 0.36 tolerated(0.46) benign(0.002) TCGA-D3-A8GR-06 18 43585437 43585437 C T PSTPIP2 Missense_Mutation p.D139N 0.38 deleterious(0.01) benign(0.049) TCGA-D3-A8GR-06 18 44561658 44561658 C T TCEB3B 5'UTR 0.31 TCGA-D3-A8GR-06 18 63529942 63529942 G A CDH7 Silent p.R551R 0.44 TCGA-D3-A8GR-06 18 64239531 64239531 G A CDH19 5'UTR 0.30 TCGA-D3-A8GR-06 18 70205590 70205590 C A CBLN2 Missense_Mutation p.G166C 0.25 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GR-06 18 71825736 71825736 T C TIMM21 3'UTR 0.44 TCGA-D3-A8GR-06 18 72346135 72346135 T G ZNF407 Missense_Mutation p.Y1054D 0.42 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 18 9257890 9257890 C G ANKRD12 Missense_Mutation p.T1542R 0.36 deleterious_low_confidence(0) benign(0.056) TCGA-D3-A8GR-06 19 10368905 10368905 T C MRPL4 Silent p.V151V 0.24 TCGA-D3-A8GR-06 19 11143988 11143988 C T SMARCA4 Missense_Mutation p.A1190V 0.47 possibly_damaging(0.73) TCGA-D3-A8GR-06 19 1360337 1360337 C T MUM1 Silent p.P140P 0.48 TCGA-D3-A8GR-06 19 15198401 15198401 C T OR1I1 Silent p.S175S 0.41 TCGA-D3-A8GR-06 19 15726466 15726466 G A AD000091.2 5'Flank 0.39 TCGA-D3-A8GR-06 19 18099265 18099265 G A KCNN1 Silent p.R367R 0.47 TCGA-D3-A8GR-06 19 22154181 22154181 G A ZNF208 Missense_Mutation p.H1219Y 0.34 deleterious(0) possibly_damaging(0.692) TCGA-D3-A8GR-06 19 22574622 22574622 T G ZNF98 Missense_Mutation p.N472T 0.39 tolerated(0.21) benign(0.138) TCGA-D3-A8GR-06 19 22940728 22940728 G A ZNF99 Silent p.S661S 0.24 TCGA-D3-A8GR-06 19 22940917 22940917 A C ZNF99 Missense_Mutation p.C598W 0.30 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GR-06 19 3762665 3762665 G A MRPL54 5'UTR 0.35 TCGA-D3-A8GR-06 19 38903639 38903639 C T RASGRP4 Silent p.E489E 0.39 TCGA-D3-A8GR-06 19 39191748 39191748 C T ACTN4 Silent p.S128S 0.50 TCGA-D3-A8GR-06 19 40149209 40149209 G A LGALS16 Missense_Mutation p.E68K 0.41 tolerated(0.26) benign(0.062) TCGA-D3-A8GR-06 19 40408058 40408058 G A FCGBP Missense_Mutation p.P1555S 0.37 possibly_damaging(0.679) TCGA-D3-A8GR-06 19 40719472 40719472 C T MAP3K10 Missense_Mutation p.P629L 0.27 deleterious(0.05) possibly_damaging(0.725) TCGA-D3-A8GR-06 19 43523091 43523091 C T PSG11 Nonsense_Mutation p.W180* 0.34 TCGA-D3-A8GR-06 19 49610955 49610955 C T SNRNP70 Silent p.S217S 0.49 TCGA-D3-A8GR-06 19 51512474 51512474 G A KLK9 Silent p.D55D 0.21 TCGA-D3-A8GR-06 19 52663778 52663778 C A ZNF836 Missense_Mutation p.V28L 0.34 deleterious(0.01) benign(0.024) TCGA-D3-A8GR-06 19 54081132 54081132 G A ZNF331 Missense_Mutation p.E440K 0.43 tolerated(0.29) benign(0.003) TCGA-D3-A8GR-06 19 55367276 55367276 C T KIR3DL2 Silent p.T286T 0.48 TCGA-D3-A8GR-06 19 55434993 55434993 C T NLRP7 3'UTR 0.43 TCGA-D3-A8GR-06 19 56163990 56163990 G A CCDC106 Missense_Mutation p.E241K 0.32 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GR-06 19 56320531 56320531 C T NLRP11 Missense_Mutation p.R482K 0.51 tolerated(0.08) probably_damaging(0.918) TCGA-D3-A8GR-06 19 56321157 56321157 G A NLRP11 Silent p.F273F 0.43 TCGA-D3-A8GR-06 19 58640350 58640350 G A ZNF329 Missense_Mutation p.S174L 0.29 tolerated(0.54) benign(0) TCGA-D3-A8GR-06 19 6452353 6452353 G A SLC25A23 Silent p.P347P 0.35 TCGA-D3-A8GR-06 19 8933489 8933489 C T ZNF558 Intron 0.36 TCGA-D3-A8GR-06 19 9059964 9059964 G A MUC16 Missense_Mutation p.S9161F 0.38 unknown(0) TCGA-D3-A8GR-06 19 9061954 9061954 C T MUC16 Missense_Mutation p.E8498K 0.40 unknown(0) TCGA-D3-A8GR-06 19 9071494 9071494 G A MUC16 Missense_Mutation p.P5318S 0.31 unknown(0) TCGA-D3-A8GR-06 19 9075471 9075471 A G MUC16 Missense_Mutation p.V3992A 0.36 unknown(0) TCGA-D3-A8GR-06 1 109270433 109270433 C T FNDC7 Missense_Mutation p.P372L 0.72 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 1 114372239 114372239 G A PTPN22 Missense_Mutation p.P742L 0.15 deleterious(0) possibly_damaging(0.856) TCGA-D3-A8GR-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.74 deleterious(0.01) benign(0.045) TCGA-D3-A8GR-06 1 120438685 120438685 G A ADAM30 Missense_Mutation p.S92F 0.32 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GR-06 1 12941734 12941734 G A PRAMEF4 Silent p.L272L 0.28 TCGA-D3-A8GR-06 1 145584533 145584533 G T PIAS3 Missense_Mutation p.M500I 0.22 tolerated(0.19) benign(0.001) TCGA-D3-A8GR-06 1 150482462 150482462 C T ECM1 Silent p.L123L 0.62 TCGA-D3-A8GR-06 1 150482463 150482463 C T ECM1 Missense_Mutation p.P124S 0.64 tolerated(0.08) benign(0.06) TCGA-D3-A8GR-06 1 151336974 151336974 G A SELENBP1 3'UTR 0.20 TCGA-D3-A8GR-06 1 151501982 151501982 C T CGN Nonsense_Mutation p.Q685* 0.71 TCGA-D3-A8GR-06 1 152282469 152282469 C T FLG Silent p.R1631R 0.22 TCGA-D3-A8GR-06 1 152573537 152573537 G A LCE3C 3'UTR 0.74 TCGA-D3-A8GR-06 1 153333183 153333183 A C S100A9 Missense_Mutation p.K72Q 0.41 tolerated(0.47) benign(0.028) TCGA-D3-A8GR-06 1 154744701 154744701 C T KCNN3 Missense_Mutation p.E400K 0.66 tolerated(0.23) benign(0.024) TCGA-D3-A8GR-06 1 156347916 156347916 C T RHBG Silent p.L170L 0.58 TCGA-D3-A8GR-06 1 158323754 158323754 G A CD1E 5'UTR 0.73 TCGA-D3-A8GR-06 1 158655086 158655086 C T SPTA1 Missense_Mutation p.E26K 0.17 tolerated(0.26) benign(0.003) TCGA-D3-A8GR-06 1 159283647 159283647 G A OR10J3 Missense_Mutation p.S268F 0.17 deleterious(0.05) benign(0.111) TCGA-D3-A8GR-06 1 159557672 159557672 C T APCS 5'UTR 0.20 TCGA-D3-A8GR-06 1 159923384 159923384 C T SLAMF9 Missense_Mutation p.E36K 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-D3-A8GR-06 1 160282923 160282923 G A COPA Missense_Mutation p.R293C 0.64 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 1 160460445 160460445 A G SLAMF6 Missense_Mutation p.M226T 0.70 tolerated(0.57) benign(0.002) TCGA-D3-A8GR-06 1 160801202 160801202 G A CD244 Missense_Mutation p.P350S 0.67 tolerated(0.42) benign(0.021) TCGA-D3-A8GR-06 1 160914959 160914959 C T ITLN2 Missense_Mutation p.E317K 0.43 deleterious(0.02) possibly_damaging(0.877) TCGA-D3-A8GR-06 1 167097119 167097119 C T DUSP27 Silent p.V917V 0.36 TCGA-D3-A8GR-06 1 169511626 169511626 G A F5 Missense_Mutation p.P901L 0.64 deleterious_low_confidence(0.04) benign(0.046) TCGA-D3-A8GR-06 1 169838253 169838253 C T SCYL3 Intron 0.28 TCGA-D3-A8GR-06 1 17085322 17085322 C T MST1L RNA 0.24 TCGA-D3-A8GR-06 1 173176358 173176358 G A TNFSF4 5'UTR 0.70 TCGA-D3-A8GR-06 1 174210776 174210776 C T RABGAP1L Missense_Mutation p.S233F 0.16 deleterious(0) probably_damaging(0.934) TCGA-D3-A8GR-06 1 175355257 175355257 G A TNR Missense_Mutation p.A563V 0.65 tolerated(0.41) benign(0.104) TCGA-D3-A8GR-06 1 175362950 175362950 G A TNR Missense_Mutation p.S441F 0.67 deleterious(0.05) possibly_damaging(0.654) TCGA-D3-A8GR-06 1 176709200 176709200 C T PAPPA2 Missense_Mutation p.S1340L 0.25 deleterious(0) benign(0.424) TCGA-D3-A8GR-06 1 182635130 182635130 G A RGS8 Missense_Mutation p.S74F 0.25 deleterious(0) possibly_damaging(0.871) TCGA-D3-A8GR-06 1 201185796 201185796 G A IGFN1 Silent p.R3170R 0.89 TCGA-D3-A8GR-06 1 201779071 201779071 C G NAV1 Intron 0.21 TCGA-D3-A8GR-06 1 202915696 202915696 G A ADIPOR1 Missense_Mutation p.P101S 0.89 deleterious(0.03) benign(0.225) TCGA-D3-A8GR-06 1 206224560 206224560 C A AVPR1B Silent p.V40V 0.24 TCGA-D3-A8GR-06 1 209768347 209768347 G A CAMK1G Missense_Mutation p.D7N 0.67 deleterious(0.02) benign(0.125) TCGA-D3-A8GR-06 1 22816811 22816811 C T ZBTB40 Nonsense_Mutation p.Q124* 0.39 TCGA-D3-A8GR-06 1 24383871 24383871 C T MYOM3 Missense_Mutation p.E1433K 0.39 deleterious(0.02) benign(0.11) TCGA-D3-A8GR-06 1 247769304 247769304 G A OR2G3 Silent p.R139R 0.86 TCGA-D3-A8GR-06 1 247921247 247921247 G A OR1C1 Silent p.L154L 0.77 TCGA-D3-A8GR-06 1 247921497 247921497 A C OR1C1 Missense_Mutation p.I71S 0.47 deleterious(0.01) benign(0.326) TCGA-D3-A8GR-06 1 248224439 248224439 G A OR2L3 Silent p.S152S 0.81 TCGA-D3-A8GR-06 1 34033413 34033413 G A CSMD2 Intron 0.14 TCGA-D3-A8GR-06 1 34276407 34276407 G A CSMD2 Silent p.F421F 0.32 TCGA-D3-A8GR-06 1 35656461 35656461 C T SFPQ Missense_Mutation p.E385K 0.43 deleterious(0.02) possibly_damaging(0.888) TCGA-D3-A8GR-06 1 37282790 37282790 C T GRIK3 Silent p.T654T 0.35 TCGA-D3-A8GR-06 1 38185641 38185641 G A EPHA10 Silent p.I834I 0.34 TCGA-D3-A8GR-06 1 57169749 57169749 A T PRKAA2 Missense_Mutation p.E298D 0.44 tolerated(0.23) benign(0) TCGA-D3-A8GR-06 1 62729007 62729007 T A KANK4 Intron 0.64 TCGA-D3-A8GR-06 1 75038524 75038524 C T C1orf173 Missense_Mutation p.G957E 0.32 tolerated(0.26) benign(0.027) TCGA-D3-A8GR-06 1 86252044 86252044 C T COL24A1 Missense_Mutation p.G1351D 0.56 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GR-06 1 90179799 90179799 C T LRRC8C Missense_Mutation p.P557L 0.64 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GR-06 1 9323883 9323883 C T H6PD Missense_Mutation p.S444F 0.29 deleterious(0) possibly_damaging(0.832) TCGA-D3-A8GR-06 1 9804004 9804004 G A CLSTN1 Missense_Mutation p.R432C 0.40 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GR-06 1 9804005 9804005 G A CLSTN1 Silent p.F431F 0.40 TCGA-D3-A8GR-06 20 32340975 32340975 C T ZNF341 Intron 0.38 TCGA-D3-A8GR-06 20 35882733 35882733 C T GHRH Splice_Site p.X63_splice 0.33 TCGA-D3-A8GR-06 20 37121700 37121700 C T RALGAPB Missense_Mutation p.P105L 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 20 377067 377067 C T TRIB3 Silent p.F270F 0.30 TCGA-D3-A8GR-06 20 45014871 45014871 A C ELMO2 Missense_Mutation p.L190R 0.38 tolerated(0.13) possibly_damaging(0.905) TCGA-D3-A8GR-06 20 47990547 47990547 G A KCNB1 Missense_Mutation p.S517L 0.47 tolerated_low_confidence(0.26) benign(0.039) TCGA-D3-A8GR-06 20 9438082 9438082 G A PLCB4 Missense_Mutation p.M994I 0.35 tolerated(0.31) benign(0.006) TCGA-D3-A8GR-06 20 9546949 9546949 G A PAK7 Missense_Mutation p.P358L 0.38 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GR-06 21 17196470 17196470 T C USP25 Missense_Mutation p.V398A 0.38 deleterious(0.05) benign(0.379) TCGA-D3-A8GR-06 21 30332020 30332020 C T LTN1 Splice_Site p.X831_splice 0.36 TCGA-D3-A8GR-06 21 39580672 39580672 C T DSCR10 RNA 0.37 TCGA-D3-A8GR-06 21 41725533 41725533 G A DSCAM Silent p.L265L 0.47 TCGA-D3-A8GR-06 21 42813713 42813713 C T MX1 Silent p.L267L 0.31 TCGA-D3-A8GR-06 21 43815521 43815521 C T TMPRSS3 Silent p.G2G 0.29 TCGA-D3-A8GR-06 21 44152004 44152004 G A PDE9A Silent p.E129E 0.33 TCGA-D3-A8GR-06 22 19709358 19709358 G A SEPT5 Silent p.A276A 0.11 TCGA-D3-A8GR-06 22 21174166 21174166 G A PI4KA Silent p.I184I 0.42 TCGA-D3-A8GR-06 22 25294496 25294496 C T SGSM1 Silent p.S915S 0.32 TCGA-D3-A8GR-06 22 29837820 29837820 G A RFPL1 Silent p.R221R 0.33 TCGA-D3-A8GR-06 22 31010455 31010455 G T TCN2 Missense_Mutation p.V183L 0.31 tolerated(0.31) benign(0.118) TCGA-D3-A8GR-06 22 31661949 31661949 C T LIMK2 Missense_Mutation p.S270F 0.36 tolerated(0.07) benign(0.009) TCGA-D3-A8GR-06 22 38695988 38695988 G A CSNK1E Silent p.L216L 0.37 TCGA-D3-A8GR-06 22 46318666 46318666 G A WNT7B 3'UTR 0.42 TCGA-D3-A8GR-06 2 100058846 100058846 G A REV1 Missense_Mutation p.P146S 0.42 tolerated(0.77) benign(0.002) TCGA-D3-A8GR-06 2 103281630 103281630 C T SLC9A2 Silent p.I275I 0.42 TCGA-D3-A8GR-06 2 105859107 105859107 G A GPR45 Silent p.K264K 0.31 TCGA-D3-A8GR-06 2 120848033 120848033 C T EPB41L5 Silent p.P328P 0.30 TCGA-D3-A8GR-06 2 1497724 1497724 C T TPO Missense_Mutation p.A640V 0.40 tolerated(0.82) benign(0.074) TCGA-D3-A8GR-06 2 160035661 160035661 C T TANC1 Silent p.L833L 0.33 TCGA-D3-A8GR-06 2 167301484 167301484 G A SCN7A Missense_Mutation p.P472S 0.43 tolerated(0.06) benign(0.003) TCGA-D3-A8GR-06 2 167313525 167313525 G A SCN7A Missense_Mutation p.S382F 0.38 deleterious(0) possibly_damaging(0.765) TCGA-D3-A8GR-06 2 172586329 172586329 C T DYNC1I2 Missense_Mutation p.S501L 0.32 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 2 176959365 176959365 G A HOXD13 Silent p.T313T 0.38 TCGA-D3-A8GR-06 2 176964921 176964921 C T HOXD12 Missense_Mutation p.A131V 0.37 tolerated(0.13) benign(0.003) TCGA-D3-A8GR-06 2 179411215 179411215 C T TTN Missense_Mutation p.E31615K 0.37 TCGA-D3-A8GR-06 2 179423305 179423305 G A TTN Silent p.L28961L 0.34 TCGA-D3-A8GR-06 2 179436093 179436093 C T TTN Silent p.R24922R 0.42 TCGA-D3-A8GR-06 2 179535890 179535890 C T TTN Silent p.E11745E 0.24 TCGA-D3-A8GR-06 2 179590259 179590259 T A TTN Missense_Mutation p.K6891M 0.35 TCGA-D3-A8GR-06 2 179642058 179642058 G A TTN Intron 0.46 TCGA-D3-A8GR-06 2 182403907 182403907 C T CERKL Missense_Mutation p.E510K 0.41 tolerated(0.21) benign(0.027) TCGA-D3-A8GR-06 2 196822128 196822128 C T DNAH7 Missense_Mutation p.E979K 0.40 tolerated(0.08) possibly_damaging(0.752) TCGA-D3-A8GR-06 2 200298116 200298116 C G SATB2 Silent p.V97V 0.49 TCGA-D3-A8GR-06 2 201846061 201846061 G A FAM126B Missense_Mutation p.P509S 0.38 tolerated(0.13) benign(0.002) TCGA-D3-A8GR-06 2 206608077 206608077 C T NRP2 Missense_Mutation p.A481V 0.45 deleterious(0.05) possibly_damaging(0.521) TCGA-D3-A8GR-06 2 207173314 207173314 G A ZDBF2 Silent p.L1354L 0.30 TCGA-D3-A8GR-06 2 207173315 207173315 G T ZDBF2 Nonsense_Mutation p.E1355* 0.28 TCGA-D3-A8GR-06 2 209007603 209007603 C T CRYGB Missense_Mutation p.R96K 0.38 tolerated(0.23) benign(0.011) TCGA-D3-A8GR-06 2 211163259 211163259 G A MYL1 Silent p.D63D 0.45 TCGA-D3-A8GR-06 2 21230334 21230334 G A APOB Missense_Mutation p.R3136C 0.40 benign(0.276) TCGA-D3-A8GR-06 2 216226803 216226803 C T FN1 Splice_Site p.X2418_splice 0.33 TCGA-D3-A8GR-06 2 216259285 216259285 C T FN1 Silent p.K1254K 0.41 TCGA-D3-A8GR-06 2 218954059 218954059 C T RUFY4 Silent p.G549G 0.56 TCGA-D3-A8GR-06 2 226378273 226378273 G A NYAP2 Silent p.R136R 0.50 TCGA-D3-A8GR-06 2 241989301 241989301 C T SNED1 Silent p.S562S 0.36 TCGA-D3-A8GR-06 2 27292523 27292523 G T AGBL5 Missense_Mutation p.R813L 0.41 tolerated_low_confidence(0.21) benign(0.018) TCGA-D3-A8GR-06 2 27292524 27292524 G A AGBL5 Silent p.R813R 0.42 TCGA-D3-A8GR-06 2 27430484 27430484 G A SLC5A6 Missense_Mutation p.S12F 0.45 tolerated_low_confidence(0.7) benign(0.014) TCGA-D3-A8GR-06 2 27804904 27804904 A G C2orf16 Missense_Mutation p.H1822R 0.38 tolerated(0.07) unknown(0) TCGA-D3-A8GR-06 2 29296930 29296930 C T C2orf71 Silent p.R66R 0.45 TCGA-D3-A8GR-06 2 31135172 31135172 C T GALNT14 Missense_Mutation p.E478K 0.39 tolerated(0.29) benign(0.061) TCGA-D3-A8GR-06 2 32735051 32735051 T A BIRC6 Missense_Mutation p.S3409R 0.35 benign(0.079) TCGA-D3-A8GR-06 2 37449551 37449551 A G CEBPZ Silent p.A679A 0.36 TCGA-D3-A8GR-06 2 37513336 37513336 T A PRKD3 Missense_Mutation p.Q298H 0.39 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 2 39025524 39025524 T A DHX57 Nonsense_Mutation p.K1360* 0.40 TCGA-D3-A8GR-06 2 39070281 39070312 CTTGCTTTAAGCTTTTCCTTTGAAATCTGTTT - DHX57 Frame_Shift_Del p.K754Afs*7 0.21 TCGA-D3-A8GR-06 2 48066634 48066634 G T FBXO11 Silent p.A122A 0.43 TCGA-D3-A8GR-06 2 48921433 48921433 A G LHCGR Missense_Mutation p.S293P 0.28 tolerated(0.36) benign(0.006) TCGA-D3-A8GR-06 2 86509319 86509319 C G REEP1 Missense_Mutation p.V34L 0.39 deleterious(0.03) benign(0.122) TCGA-D3-A8GR-06 2 90044385 90044385 G A IGKV2D-24 Silent p.R102R 0.33 TCGA-D3-A8GR-06 3 100645319 100645319 C T ABI3BP Missense_Mutation p.R36K 0.73 tolerated(0.33) benign(0.001) TCGA-D3-A8GR-06 3 125509344 125509344 C T MIR548I1 RNA 0.42 TCGA-D3-A8GR-06 3 12560665 12560665 C A TSEN2 Silent p.P356P 0.39 TCGA-D3-A8GR-06 3 12856888 12856888 G A CAND2 Missense_Mutation p.E419K 0.33 tolerated(0.59) benign(0.027) TCGA-D3-A8GR-06 3 151598689 151598689 C T SUCNR1 Nonsense_Mutation p.R120* 0.67 TCGA-D3-A8GR-06 3 155198821 155198821 G A PLCH1 Missense_Mutation p.S1673F 0.67 tolerated(0.06) probably_damaging(0.928) TCGA-D3-A8GR-06 3 161214809 161214809 C T OTOL1 Missense_Mutation p.P72S 0.66 tolerated(0.36) unknown(0) TCGA-D3-A8GR-06 3 161214810 161214810 C T OTOL1 Missense_Mutation p.P72L 0.64 tolerated(0.25) unknown(0) TCGA-D3-A8GR-06 3 167183423 167183423 G A SERPINI2 Missense_Mutation p.P173S 0.75 tolerated(0.21) probably_damaging(0.934) TCGA-D3-A8GR-06 3 188925318 188925318 G A TPRG1 Missense_Mutation p.E49K 0.70 tolerated(0.52) benign(0.002) TCGA-D3-A8GR-06 3 195453398 195453398 A G MUC20 Missense_Mutation p.T642A 0.37 tolerated(0.35) unknown(0) TCGA-D3-A8GR-06 3 19992380 19992380 C T RAB5A 5'UTR 0.55 TCGA-D3-A8GR-06 3 21552420 21552420 C T ZNF385D Silent p.K124K 0.27 TCGA-D3-A8GR-06 3 38739366 38739366 C T SCN10A Missense_Mutation p.R1782Q 0.42 tolerated(0.23) benign(0.002) TCGA-D3-A8GR-06 3 38936347 38936347 G A SCN11A Nonsense_Mutation p.R838* 0.33 TCGA-D3-A8GR-06 3 46563027 46563027 C T LRRC2 Missense_Mutation p.D351N 0.41 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GR-06 3 48538680 48538680 G A SHISA5 Silent p.P41P 0.36 TCGA-D3-A8GR-06 3 50211302 50211302 C G SEMA3F Missense_Mutation p.D63E 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 3 50329957 50329957 G A IFRD2 5'Flank 0.26 TCGA-D3-A8GR-06 3 53531432 53531432 C T CACNA1D Silent p.F107F 0.35 TCGA-D3-A8GR-06 3 54905632 54905632 G A CACNA2D3 Missense_Mutation p.E565K 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-D3-A8GR-06 3 64627637 64627637 T G ADAMTS9 Missense_Mutation p.E581D 0.39 tolerated(0.28) benign(0.008) TCGA-D3-A8GR-06 3 85935441 85935441 G A CADM2 Missense_Mutation p.D158N 0.23 tolerated(0.39) benign(0.007) TCGA-D3-A8GR-06 3 9767696 9767696 C A CPNE9 Silent p.V435V 0.41 TCGA-D3-A8GR-06 4 100350734 100350734 C T ADH7 Silent p.E45E 0.47 TCGA-D3-A8GR-06 4 102839335 102839335 G A BANK1 Missense_Mutation p.E399K 0.46 tolerated(0.44) possibly_damaging(0.668) TCGA-D3-A8GR-06 4 111463965 111463981 TCATATTGGGTTTTATC - ENPEP Frame_Shift_Del p.D622Efs*5 0.34 TCGA-D3-A8GR-06 4 115760629 115760629 G A NDST4 Missense_Mutation p.P731S 0.34 tolerated(0.19) benign(0.005) TCGA-D3-A8GR-06 4 123107250 123107250 A C KIAA1109 Missense_Mutation p.N140H 0.30 probably_damaging(0.997) TCGA-D3-A8GR-06 4 123317461 123317461 A T ADAD1 Missense_Mutation p.N218I 0.34 deleterious(0) benign(0.172) TCGA-D3-A8GR-06 4 141543256 141543256 A T TBC1D9 3'UTR 0.40 TCGA-D3-A8GR-06 4 148887846 148887846 C T ARHGAP10 Silent p.S524S 0.34 TCGA-D3-A8GR-06 4 15444310 15444310 G A C1QTNF7 Missense_Mutation p.D260N 0.40 deleterious(0) probably_damaging(0.948) TCGA-D3-A8GR-06 4 155462025 155462025 C T PLRG1 Missense_Mutation p.R250Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 4 159092260 159092260 G A FAM198B Silent p.L90L 0.40 TCGA-D3-A8GR-06 4 169279214 169279214 C T DDX60L 3'UTR 0.43 TCGA-D3-A8GR-06 4 175897387 175897387 T G ADAM29 Missense_Mutation p.D237E 0.35 tolerated(0.79) benign(0.036) TCGA-D3-A8GR-06 4 185606792 185606792 C T PRIMPOL Missense_Mutation p.R417W 0.68 probably_damaging(1) TCGA-D3-A8GR-06 4 40428050 40428050 C T RBM47 Silent p.T551T 0.43 TCGA-D3-A8GR-06 4 420296 420296 G A ABCA11P RNA 0.60 TCGA-D3-A8GR-06 4 69973972 69973972 A G UGT2B7 Silent p.R414R 0.38 TCGA-D3-A8GR-06 4 81952583 81952583 G A BMP3 Missense_Mutation p.E49K 0.20 tolerated(0.7) benign(0.013) TCGA-D3-A8GR-06 5 111545599 111545599 G A EPB41L4A Missense_Mutation p.P390S 0.32 tolerated(0.15) possibly_damaging(0.548) TCGA-D3-A8GR-06 5 118525537 118525537 T C DMXL1 Missense_Mutation p.F2424L 0.46 deleterious(0) benign(0.41) TCGA-D3-A8GR-06 5 118965494 118965494 G A FAM170A Missense_Mutation p.E11K 0.40 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GR-06 5 13867993 13867993 C T DNAH5 Missense_Mutation p.E1315K 0.47 benign(0.305) TCGA-D3-A8GR-06 5 140564447 140564447 C T PCDHB16 Silent p.I771I 0.42 TCGA-D3-A8GR-06 5 140711332 140711332 C T PCDHGA1 Missense_Mutation p.P361S 0.45 tolerated_low_confidence(0.11) benign(0.05) TCGA-D3-A8GR-06 5 141358048 141358048 C T RNF14 Missense_Mutation p.P163S 0.47 tolerated(0.63) benign(0.001) TCGA-D3-A8GR-06 5 167626914 167626914 C T TENM2 Missense_Mutation p.R1070C 0.40 tolerated(0.24) benign(0) TCGA-D3-A8GR-06 5 32789544 32789544 G A AC026703.1 Missense_Mutation p.E13K 0.36 possibly_damaging(0.486) TCGA-D3-A8GR-06 5 35874594 35874594 T A IL7R Missense_Mutation p.F250L 0.35 tolerated(0.17) benign(0.035) TCGA-D3-A8GR-06 5 35874595 35874595 T G IL7R Missense_Mutation p.F251V 0.35 tolerated(0.18) benign(0.099) TCGA-D3-A8GR-06 5 38489315 38489315 C T LIFR Missense_Mutation p.D734N 0.39 deleterious(0.02) benign(0.423) TCGA-D3-A8GR-06 5 38917650 38917650 C T OSMR Missense_Mutation p.P430S 0.44 deleterious(0.02) possibly_damaging(0.533) TCGA-D3-A8GR-06 5 38923328 38923328 G A OSMR Silent p.E614E 0.41 TCGA-D3-A8GR-06 5 41155154 41155154 G A C6 Missense_Mutation p.T674I 0.38 deleterious(0) benign(0.19) TCGA-D3-A8GR-06 5 52978945 52978945 T C NDUFS4 Intron 0.38 TCGA-D3-A8GR-06 5 64050188 64050188 A G SREK1IP1 Silent p.G5G 0.29 TCGA-D3-A8GR-06 5 64483969 64483969 C T ADAMTS6 Silent p.R928R 0.40 TCGA-D3-A8GR-06 5 74017440 74017440 A C GFM2 3'UTR 0.27 TCGA-D3-A8GR-06 5 82834352 82834352 C T VCAN Missense_Mutation p.P1844S 0.36 tolerated(0.09) possibly_damaging(0.827) TCGA-D3-A8GR-06 5 89910653 89910653 G A GPR98 Silent p.G8G 0.44 TCGA-D3-A8GR-06 6 102307164 102307164 A G GRIK2 Silent p.E440E 0.39 TCGA-D3-A8GR-06 6 117609906 117609906 C T ROS1 Missense_Mutation p.E2265K 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-D3-A8GR-06 6 117631304 117631304 A G ROS1 Missense_Mutation p.V2125A 0.41 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GR-06 6 117663707 117663707 C T ROS1 Missense_Mutation p.E1509K 0.47 deleterious(0.01) possibly_damaging(0.834) TCGA-D3-A8GR-06 6 121433677 121433677 G A TBC1D32 Missense_Mutation p.L1100F 0.44 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 6 129371133 129371133 A T LAMA2 Missense_Mutation p.K61N 0.34 tolerated(0.19) benign(0.012) TCGA-D3-A8GR-06 6 149944355 149944355 G A KATNA1 Missense_Mutation p.R129C 0.78 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GR-06 6 15496385 15496385 C T JARID2 Missense_Mutation p.T310I 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.545) TCGA-D3-A8GR-06 6 165806196 165806196 G A PDE10A Missense_Mutation p.T532I 0.64 deleterious(0.01) possibly_damaging(0.866) TCGA-D3-A8GR-06 6 25966771 25966771 C T TRIM38 Silent p.T7T 0.35 TCGA-D3-A8GR-06 6 29395151 29395151 C T OR11A1 Missense_Mutation p.E90K 0.29 tolerated(0.08) benign(0.001) TCGA-D3-A8GR-06 6 31779055 31779055 C T HSPA1L Missense_Mutation p.G232E 0.34 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-D3-A8GR-06 6 32169850 32169850 C T NOTCH4 Intron 0.38 TCGA-D3-A8GR-06 6 34004236 34004236 G A GRM4 Nonsense_Mutation p.Q551* 0.49 TCGA-D3-A8GR-06 6 34101149 34101149 G A GRM4 Missense_Mutation p.S42F 0.34 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GR-06 6 38838225 38838225 C T DNAH8 Missense_Mutation p.P2076S 0.40 probably_damaging(1) TCGA-D3-A8GR-06 6 41740560 41740560 G A FRS3 Missense_Mutation p.P131S 0.40 tolerated(0.43) benign(0.002) TCGA-D3-A8GR-06 6 41740561 41740561 G A FRS3 Silent p.L130L 0.40 TCGA-D3-A8GR-06 6 42689675 42689675 C T PRPH2 Missense_Mutation p.G133E 0.30 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GR-06 6 45922925 45922925 C T CLIC5 Missense_Mutation p.M199I 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-D3-A8GR-06 6 47645613 47645613 G A GPR111 Missense_Mutation p.R104K 0.12 tolerated(0.34) benign(0.007) TCGA-D3-A8GR-06 6 49578785 49578785 A C RHAG Missense_Mutation p.V340G 0.38 deleterious(0.03) possibly_damaging(0.493) TCGA-D3-A8GR-06 6 51910838 51910838 C T PKHD1 Nonsense_Mutation p.W852* 0.43 TCGA-D3-A8GR-06 6 55935567 55935567 C T COL21A1 Silent p.G665G 0.35 TCGA-D3-A8GR-06 6 74150110 74150110 A T MB21D1 Silent p.I312I 0.39 TCGA-D3-A8GR-06 6 76023657 76023657 C T FILIP1 Missense_Mutation p.E631K 0.38 deleterious(0.03) possibly_damaging(0.695) TCGA-D3-A8GR-06 6 76751689 76751689 G A IMPG1 Silent p.F74F 0.45 TCGA-D3-A8GR-06 6 87725913 87725913 G A HTR1E Silent p.R287R 0.39 TCGA-D3-A8GR-06 7 100855537 100855537 G A PLOD3 Missense_Mutation p.A375V 0.31 deleterious(0.02) benign(0.059) TCGA-D3-A8GR-06 7 100861414 100861414 C T ZNHIT1 5'UTR 0.24 TCGA-D3-A8GR-06 7 111517173 111517173 G A DOCK4 Missense_Mutation p.L553F 0.47 tolerated(0.06) possibly_damaging(0.612) TCGA-D3-A8GR-06 7 1132161 1132161 T C GPER1 Missense_Mutation p.L266P 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 7 120935563 120935563 G A CPED1 Missense_Mutation p.G980R 0.32 deleterious(0) probably_damaging(0.964) TCGA-D3-A8GR-06 7 120935804 120935804 C T CPED1 3'UTR 0.29 TCGA-D3-A8GR-06 7 132070005 132070005 C T PLXNA4 Intron 0.63 TCGA-D3-A8GR-06 7 138764618 138764618 G A ZC3HAV1 Missense_Mutation p.P357S 0.53 tolerated(0.71) benign(0.001) TCGA-D3-A8GR-06 7 141536194 141536194 C T PRSS37 3'UTR 0.57 TCGA-D3-A8GR-06 7 142654974 142654974 G A KEL Silent p.F204F 0.49 TCGA-D3-A8GR-06 7 144062341 144062341 G C ARHGEF5 Missense_Mutation p.G860A 0.08 tolerated(0.26) benign(0.103) TCGA-D3-A8GR-06 7 144096186 144096186 G A NOBOX Silent p.L442L 0.22 TCGA-D3-A8GR-06 7 148514341 148514341 C A EZH2 Missense_Mutation p.R461S 0.17 deleterious(0.02) benign(0.064) TCGA-D3-A8GR-06 7 150027799 150027799 C T ZBED6CL Silent p.V102V 0.57 TCGA-D3-A8GR-06 7 150554587 150554587 A T AOC1 Silent p.G343G 0.34 TCGA-D3-A8GR-06 7 150721005 150721005 C T ATG9B Missense_Mutation p.G169E 0.30 tolerated(0.13) benign(0.356) TCGA-D3-A8GR-06 7 1589575 1589575 G A TMEM184A Silent p.L187L 0.36 TCGA-D3-A8GR-06 7 22259507 22259507 T A RAPGEF5 Missense_Mutation p.K172I 0.42 deleterious(0.02) possibly_damaging(0.723) TCGA-D3-A8GR-06 7 4272923 4272923 C T SDK1 Missense_Mutation p.P1955L 0.36 deleterious(0.02) benign(0.125) TCGA-D3-A8GR-06 7 47835717 47835717 T A PKD1L1 Missense_Mutation p.K2742I 0.30 deleterious(0) probably_damaging(0.949) TCGA-D3-A8GR-06 7 4800860 4800860 C T FOXK1 Missense_Mutation p.A621V 0.30 tolerated(0.09) possibly_damaging(0.642) TCGA-D3-A8GR-06 7 71252866 71252866 C T CALN1 Missense_Mutation p.R227K 0.35 tolerated(0.17) probably_damaging(0.969) TCGA-D3-A8GR-06 7 88423463 88423463 T A C7orf62 3'UTR 0.49 TCGA-D3-A8GR-06 7 92764975 92764975 G A SAMD9L Missense_Mutation p.P104S 0.53 tolerated(0.68) benign(0.004) TCGA-D3-A8GR-06 7 939748 939748 C T ADAP1 Silent p.T262T 0.26 TCGA-D3-A8GR-06 8 110457192 110457192 C T PKHD1L1 Silent p.F1698F 0.44 TCGA-D3-A8GR-06 8 110509439 110509439 C T PKHD1L1 Missense_Mutation p.P3513S 0.37 tolerated(1) benign(0.005) TCGA-D3-A8GR-06 8 123966106 123966106 G A ZHX2 Missense_Mutation p.E786K 0.39 tolerated(0.21) benign(0.098) TCGA-D3-A8GR-06 8 144464658 144464658 G A RHPN1 Missense_Mutation p.R617K 0.31 tolerated(1) benign(0.009) TCGA-D3-A8GR-06 8 145095081 145095081 C T SPATC1 Silent p.S161S 0.65 TCGA-D3-A8GR-06 8 17401213 17401213 C T SLC7A2 Missense_Mutation p.S162L 0.43 deleterious(0) possibly_damaging(0.837) TCGA-D3-A8GR-06 8 3205548 3205548 C T CSMD1 Missense_Mutation p.R1147Q 0.37 benign(0.009) TCGA-D3-A8GR-06 8 33247108 33247108 G A FUT10 Silent p.L195L 0.49 TCGA-D3-A8GR-06 8 42179906 42179906 C T IKBKB Missense_Mutation p.P627L 0.35 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.40 tolerated(0.85) benign(0.006) TCGA-D3-A8GR-06 8 55543010 55543010 C T RP1 3'UTR 0.40 TCGA-D3-A8GR-06 8 57353664 57353664 A G PENK 3'UTR 0.30 TCGA-D3-A8GR-06 8 77766590 77766590 C T ZFHX4 Missense_Mutation p.S2478F 0.34 probably_damaging(0.931) TCGA-D3-A8GR-06 8 88365913 88365913 C A CNBD1 Missense_Mutation p.S401Y 0.38 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 8 98289579 98289579 C T TSPYL5 Missense_Mutation p.G165D 0.33 tolerated(0.06) possibly_damaging(0.462) TCGA-D3-A8GR-06 9 107289149 107289149 G A OR13C4 Silent p.L114L 0.73 TCGA-D3-A8GR-06 9 112898404 112898404 C G PALM2-AKAP2 Intron 0.66 TCGA-D3-A8GR-06 9 119976886 119976886 G A ASTN2 Missense_Mutation p.P256S 0.68 deleterious_low_confidence(0.03) unknown(0) TCGA-D3-A8GR-06 9 120476797 120476797 G A TLR4 Nonsense_Mutation p.W797* 0.53 TCGA-D3-A8GR-06 9 120476798 120476798 G A TLR4 Missense_Mutation p.E798K 0.53 tolerated(0.58) probably_damaging(0.98) TCGA-D3-A8GR-06 9 130912713 130912713 G A LCN2 Intron 0.07 TCGA-D3-A8GR-06 9 131469177 131469177 C T PKN3 Missense_Mutation p.P176S 0.62 tolerated(0.49) possibly_damaging(0.811) TCGA-D3-A8GR-06 9 131469178 131469178 C T PKN3 Missense_Mutation p.P176L 0.60 tolerated(0.43) benign(0.097) TCGA-D3-A8GR-06 9 39171442 39171442 G A CNTNAP3 Silent p.F419F 0.68 TCGA-D3-A8GR-06 9 77435231 77435231 G A TRPM6 Missense_Mutation p.H375Y 0.62 tolerated(0.14) benign(0.013) TCGA-D3-A8GR-06 9 990476 990476 G A DMRT3 Missense_Mutation p.R297Q 0.84 deleterious(0.04) benign(0.105) TCGA-D3-A8GR-06 X 100911826 100911826 A G ARMCX2 Missense_Mutation p.V250A 0.37 tolerated_low_confidence(0.17) benign(0.007) TCGA-D3-A8GR-06 X 10094265 10094265 C T WWC3 Silent p.P675P 0.32 TCGA-D3-A8GR-06 X 101910556 101910556 C T GPRASP1 Missense_Mutation p.P572L 0.36 deleterious(0) benign(0.084) TCGA-D3-A8GR-06 X 101912289 101912289 A C GPRASP1 Missense_Mutation p.K1150Q 0.39 deleterious(0.01) possibly_damaging(0.876) TCGA-D3-A8GR-06 X 103359289 103359289 G A ZCCHC18 Missense_Mutation p.G163S 0.32 tolerated(0.29) probably_damaging(0.954) TCGA-D3-A8GR-06 X 107037849 107037849 G A NCBP2L Silent p.R133R 0.32 TCGA-D3-A8GR-06 X 107224629 107224629 C T TEX13B Missense_Mutation p.G207E 0.32 tolerated(0.42) possibly_damaging(0.629) TCGA-D3-A8GR-06 X 119387994 119387994 A G ZBTB33 Missense_Mutation p.N242D 0.39 tolerated(0.35) benign(0.002) TCGA-D3-A8GR-06 X 122755062 122755062 A T THOC2 Missense_Mutation p.S1388T 0.35 tolerated(0.24) benign(0.007) TCGA-D3-A8GR-06 X 122755140 122755140 C T THOC2 Missense_Mutation p.E1362K 0.31 tolerated(0.11) possibly_damaging(0.524) TCGA-D3-A8GR-06 X 12632973 12632973 C T FRMPD4 Missense_Mutation p.P132L 0.31 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GR-06 X 135593592 135593592 G A HTATSF1 Missense_Mutation p.R563K 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-D3-A8GR-06 X 138699770 138699770 T C MCF2 Missense_Mutation p.N361D 0.39 tolerated(0.1) benign(0.22) TCGA-D3-A8GR-06 X 142717170 142717170 A T SLITRK4 Missense_Mutation p.N585K 0.38 tolerated(0.59) benign(0.001) TCGA-D3-A8GR-06 X 144337212 144337212 G A SPANXN1 Missense_Mutation p.D33N 0.50 tolerated(0.11) possibly_damaging(0.653) TCGA-D3-A8GR-06 X 151303909 151303909 A G MAGEA10 Missense_Mutation p.S62P 0.39 tolerated(0.27) benign(0.25) TCGA-D3-A8GR-06 X 153693200 153693200 C T PLXNA3 Missense_Mutation p.H678Y 0.27 deleterious(0.01) benign(0.173) TCGA-D3-A8GR-06 X 31496478 31496478 C T DMD Silent p.E2894E 0.38 TCGA-D3-A8GR-06 X 3240517 3240517 C T MXRA5 Missense_Mutation p.G1070E 0.38 tolerated(0.32) benign(0.003) TCGA-D3-A8GR-06 X 47101675 47101675 C T USP11 Silent p.I501I 0.36 TCGA-D3-A8GR-06 X 49142477 49142477 G T PPP1R3F Missense_Mutation p.G442V 0.48 deleterious_low_confidence(0.03) possibly_damaging(0.701) TCGA-D3-A8GR-06 X 53432304 53432304 G A SMC1A Missense_Mutation p.T644I 0.40 deleterious(0) probably_damaging(1) TCGA-D3-A8GR-06 X 53576038 53576038 G A HUWE1 Missense_Mutation p.S3306L 0.33 benign(0.001) TCGA-D3-A8GR-06 X 55247811 55247811 G C PAGE5 Missense_Mutation p.R19T 0.44 tolerated_low_confidence(0.12) benign(0) TCGA-D3-A8GR-06 X 56295829 56295829 C T KLF8 Missense_Mutation p.S222F 0.31 tolerated(0.18) benign(0.007) TCGA-D3-A8GR-06 X 57515294 57515294 C T FAAH2 Missense_Mutation p.H510Y 0.51 deleterious(0.01) possibly_damaging(0.752) TCGA-D3-A8GR-06 X 6069429 6069429 G A NLGN4X Silent p.L27L 0.39 TCGA-D3-A8GR-06 X 71351079 71351079 C T RGAG4 Silent p.L104L 0.38 TCGA-D3-A8GR-06 X 73963083 73963083 C T KIAA2022 Missense_Mutation p.G437R 0.43 deleterious(0) probably_damaging(0.928) TCGA-D3-A8GR-06 X 75649158 75649158 G A MAGEE1 Missense_Mutation p.G279R 0.42 deleterious_low_confidence(0.02) benign(0.19) TCGA-D3-A8GR-06 X 78010570 78010570 G A LPAR4 Missense_Mutation p.M68I 0.37 deleterious(0.05) benign(0.02) TCGA-D3-A8GR-06 X 84525692 84525692 G A ZNF711 Missense_Mutation p.V382M 0.34 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 X 86877265 86877265 G A KLHL4 Missense_Mutation p.E327K 0.37 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GR-06 X 88008812 88008812 C T CPXCR1 Nonsense_Mutation p.R133* 0.35 TCGA-D3-A8GR-06 X 9863305 9863305 C T SHROOM2 Nonsense_Mutation p.Q453* 0.37 TCGA-D3-A8GS-06 10 102741296 102741296 G A MRPL43 Silent p.I220I 0.44 TCGA-D3-A8GS-06 10 104417149 104417149 C T TRIM8 3'UTR 0.35 TCGA-D3-A8GS-06 10 104417150 104417150 C T TRIM8 3'UTR 0.32 TCGA-D3-A8GS-06 10 107005420 107005420 C T SORCS3 Missense_Mutation p.H997Y 0.64 tolerated(1) benign(0.004) TCGA-D3-A8GS-06 10 125804409 125804409 G A CHST15 Silent p.F191F 0.37 TCGA-D3-A8GS-06 10 128973733 128973733 G A FAM196A Silent p.P309P 0.39 TCGA-D3-A8GS-06 10 129350899 129350899 C T NPS Missense_Mutation p.S89L 0.36 deleterious(0) benign(0.342) TCGA-D3-A8GS-06 10 55568842 55568842 C T PCDH15 Silent p.R590R 0.44 TCGA-D3-A8GS-06 10 61994494 61994494 C T ANK3 Missense_Mutation p.M283I 0.35 probably_damaging(0.989) TCGA-D3-A8GS-06 10 73553061 73553061 C T CDH23 5'Flank 0.19 TCGA-D3-A8GS-06 10 93349 93349 T G TUBB8 Missense_Mutation p.E328A 0.39 deleterious_low_confidence(0.03) probably_damaging(0.943) TCGA-D3-A8GS-06 11 102826178 102826178 G A MMP13 Silent p.I55I 0.23 TCGA-D3-A8GS-06 11 103128356 103128356 C T DYNC2H1 Missense_Mutation p.P3501L 0.14 probably_damaging(0.979) TCGA-D3-A8GS-06 11 105929763 105929763 G A KBTBD3 Missense_Mutation p.P21L 0.28 deleterious_low_confidence(0.04) benign(0.001) TCGA-D3-A8GS-06 11 106647230 106647230 G A GUCY1A2 Silent p.L591L 0.21 TCGA-D3-A8GS-06 11 125280188 125280188 G A PKNOX2 Missense_Mutation p.A229T 0.32 tolerated(0.66) benign(0.003) TCGA-D3-A8GS-06 11 129794776 129794776 C A PRDM10 Splice_Site p.X630_splice 0.28 TCGA-D3-A8GS-06 11 133791182 133791182 C T IGSF9B Missense_Mutation p.R813H 0.20 deleterious(0.03) possibly_damaging(0.748) TCGA-D3-A8GS-06 11 49974880 49974880 G A OR4C13 Silent p.R302R 0.26 TCGA-D3-A8GS-06 11 5253961 5253961 C T HBD 3'Flank 0.29 TCGA-D3-A8GS-06 11 55735653 55735653 A T OR10AG1 Missense_Mutation p.L96H 0.21 deleterious(0.02) benign(0.371) TCGA-D3-A8GS-06 11 55944895 55944895 G T OR5J2 Missense_Mutation p.V268L 0.12 tolerated(1) benign(0.004) TCGA-D3-A8GS-06 11 58604568 58604568 G A GLYATL2 Silent p.L132L 0.24 TCGA-D3-A8GS-06 11 59578100 59578100 G A MRPL16 Missense_Mutation p.P11L 0.34 deleterious_low_confidence(0.02) benign(0.056) TCGA-D3-A8GS-06 11 73785382 73785382 G A C2CD3 Silent p.L1623L 0.18 TCGA-D3-A8GS-06 11 76506972 76506972 C T TSKU Silent p.F104F 0.45 TCGA-D3-A8GS-06 11 7722887 7722887 C T OVCH2 Missense_Mutation p.G232E 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GS-06 11 94113669 94113669 G A GPR83 Silent p.F306F 0.30 TCGA-D3-A8GS-06 11 9829557 9829557 C T SBF2 Missense_Mutation p.C1478Y 0.16 deleterious(0) probably_damaging(0.921) TCGA-D3-A8GS-06 12 103240729 103240729 C T PAH Missense_Mutation p.E305K 0.12 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GS-06 12 106633480 106633480 G A CKAP4 Silent p.L377L 0.24 TCGA-D3-A8GS-06 12 11083350 11083350 A T PRH2 Missense_Mutation p.N64Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-D3-A8GS-06 12 111322043 111322043 C T CCDC63 Nonsense_Mutation p.Q355* 0.12 TCGA-D3-A8GS-06 12 11545858 11545858 C T PRB2 Missense_Mutation p.G385E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GS-06 12 123424744 123424744 C T ABCB9 Missense_Mutation p.E553K 0.19 deleterious(0) probably_damaging(0.96) TCGA-D3-A8GS-06 12 14774107 14774107 G A GUCY2C Missense_Mutation p.P882L 0.33 deleterious(0) probably_damaging(1) TCGA-D3-A8GS-06 12 15035082 15035082 C T MGP Silent p.G126G 0.27 TCGA-D3-A8GS-06 12 1675886 1675886 C T FBXL14 3'UTR 0.14 TCGA-D3-A8GS-06 12 1965193 1965193 C T CACNA2D4 Missense_Mutation p.D713N 0.26 tolerated(0.16) benign(0.042) TCGA-D3-A8GS-06 12 39696913 39696913 G A KIF21A Missense_Mutation p.L1529F 0.25 tolerated(0.71) possibly_damaging(0.573) TCGA-D3-A8GS-06 12 55714423 55714423 G A OR6C1 Missense_Mutation p.G14R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-D3-A8GS-06 12 57397846 57397846 G A ZBTB39 Missense_Mutation p.P286S 0.19 tolerated(0.66) benign(0.062) TCGA-D3-A8GS-06 12 57485411 57485411 G A NAB2 Missense_Mutation p.G196E 0.21 tolerated(0.15) possibly_damaging(0.449) TCGA-D3-A8GS-06 12 57485412 57485412 G C NAB2 Silent p.G196G 0.22 TCGA-D3-A8GS-06 12 7640332 7640332 G A CD163 Intron 0.27 TCGA-D3-A8GS-06 12 8814687 8814687 C T MFAP5 Missense_Mutation p.G5E 0.36 deleterious(0.04) benign(0.358) TCGA-D3-A8GS-06 13 20797589 20797589 C A GJB6 Missense_Mutation p.G11W 0.11 deleterious(0) probably_damaging(0.996) TCGA-D3-A8GS-06 13 77670588 77670588 A G MYCBP2 Silent p.G3233G 0.32 TCGA-D3-A8GS-06 14 106667607 106667607 C T IGHV3-20 Missense_Mutation p.D109N 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-D3-A8GS-06 14 19571374 19571374 G A POTEG Missense_Mutation p.E385K 0.08 tolerated(0.08) possibly_damaging(0.593) TCGA-D3-A8GS-06 14 20296389 20296389 C T OR4N2 Missense_Mutation p.P261L 0.14 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GS-06 14 22133434 22133434 C T OR4E2 Silent p.I46I 0.34 TCGA-D3-A8GS-06 14 38273943 38273943 C A TTC6 Missense_Mutation p.P1363Q 0.16 tolerated(0.62) possibly_damaging(0.596) TCGA-D3-A8GS-06 14 53010339 53010339 A G TXNDC16 5'UTR 0.50 TCGA-D3-A8GS-06 14 64488179 64488179 C T SYNE2 Silent p.S1766S 0.35 TCGA-D3-A8GS-06 14 95090185 95090185 G A SERPINA3 3'UTR 0.34 TCGA-D3-A8GS-06 14 96912879 96912879 G A AK7 Missense_Mutation p.V269M 0.34 tolerated(0.16) benign(0.011) TCGA-D3-A8GS-06 15 22869952 22869952 A T TUBGCP5 Missense_Mutation p.N959I 0.16 deleterious(0) probably_damaging(0.984) TCGA-D3-A8GS-06 15 24921762 24921762 C A NPAP1 Silent p.R250R 0.25 TCGA-D3-A8GS-06 15 42000014 42000014 C T MGA Silent p.S759S 0.19 TCGA-D3-A8GS-06 15 65425249 65425249 C T PDCD7 Splice_Site p.X290_splice 0.18 TCGA-D3-A8GS-06 15 69325412 69325412 C T NOX5 Missense_Mutation p.P217L 0.31 tolerated(0.28) benign(0.001) TCGA-D3-A8GS-06 15 72691060 72691060 G A TMEM202 Missense_Mutation p.D50N 0.27 tolerated(0.22) benign(0.009) TCGA-D3-A8GS-06 15 78485862 78485862 C T ACSBG1 Missense_Mutation p.E217K 0.20 tolerated(0.14) benign(0.232) TCGA-D3-A8GS-06 15 81592570 81592570 C T IL16 Missense_Mutation p.P968L 0.30 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GS-06 15 83776471 83776471 C T TM6SF1 Silent p.S13S 0.29 TCGA-D3-A8GS-06 15 91769605 91769605 G A SV2B Missense_Mutation p.G38S 0.18 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GS-06 15 93595334 93595334 G A RGMA Silent p.F186F 0.27 TCGA-D3-A8GS-06 15 95001444 95001444 G A MCTP2 Missense_Mutation p.E777K 0.34 deleterious(0) possibly_damaging(0.771) TCGA-D3-A8GS-06 16 12145888 12145888 C T SNX29 Silent p.F311F 0.39 TCGA-D3-A8GS-06 16 15761168 15761168 C T NDE1 Nonsense_Mutation p.R37* 0.40 TCGA-D3-A8GS-06 16 20976175 20976175 C T DNAH3 Missense_Mutation p.A3011T 0.12 deleterious(0.03) possibly_damaging(0.516) TCGA-D3-A8GS-06 16 34739672 34739672 C T RP11-80F22.15 RNA 0.17 TCGA-D3-A8GS-06 16 70916613 70916613 C T HYDIN Missense_Mutation p.G3389R 0.35 probably_damaging(0.991) TCGA-D3-A8GS-06 16 84256054 84256054 G A KCNG4 Silent p.I443I 0.30 TCGA-D3-A8GS-06 17 10432997 10432997 C T MYH2 Missense_Mutation p.E1001K 0.20 deleterious(0.01) probably_damaging(0.927) TCGA-D3-A8GS-06 17 1637437 1637437 C T WDR81 Silent p.F1702F 0.24 TCGA-D3-A8GS-06 17 20000058 20000058 A C SPECC1 Missense_Mutation p.M32L 0.23 deleterious(0.03) benign(0.002) TCGA-D3-A8GS-06 17 3144169 3144169 C T OR1D4 RNA 0.20 TCGA-D3-A8GS-06 17 45787936 45787936 C T TBKBP1 Missense_Mutation p.P598S 0.34 deleterious(0) unknown(0) TCGA-D3-A8GS-06 17 46804123 46804123 C T HOXB13 3'UTR 0.15 TCGA-D3-A8GS-06 17 48680497 48680497 G A CACNA1G Missense_Mutation p.S1369N 0.32 deleterious(0.02) possibly_damaging(0.871) TCGA-D3-A8GS-06 17 72851185 72851185 C T GRIN2C Missense_Mutation p.G16D 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D3-A8GS-06 17 72851186 72851186 C T GRIN2C Missense_Mutation p.G16S 0.25 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-D3-A8GS-06 17 74276514 74276514 G A QRICH2 Silent p.L1328L 0.20 TCGA-D3-A8GS-06 17 74387540 74387540 C T UBE2O Silent p.E1121E 0.20 TCGA-D3-A8GS-06 17 80085724 80085724 G A CCDC57 Missense_Mutation p.P804S 0.39 tolerated(0.15) possibly_damaging(0.803) TCGA-D3-A8GS-06 18 28898267 28898267 G A DSG1 Missense_Mutation p.D2N 0.38 tolerated(0.14) benign(0.012) TCGA-D3-A8GS-06 18 909495 909495 G A ADCYAP1 Silent p.K130K 0.32 TCGA-D3-A8GS-06 19 12638503 12638503 G A ZNF564 Missense_Mutation p.P140L 0.27 deleterious(0.05) possibly_damaging(0.853) TCGA-D3-A8GS-06 19 15651498 15651498 G A CYP4F22 Silent p.L303L 0.20 TCGA-D3-A8GS-06 19 30106281 30106281 C T POP4 Silent p.D219D 0.24 TCGA-D3-A8GS-06 19 41040203 41040203 C T SPTBN4 Missense_Mutation p.P1438S 0.18 tolerated(0.4) benign(0.212) TCGA-D3-A8GS-06 19 42260735 42260735 C T CEACAM6 Nonsense_Mutation p.R98* 0.26 TCGA-D3-A8GS-06 19 4323017 4323017 G A FSD1 Nonsense_Mutation p.W358* 0.36 TCGA-D3-A8GS-06 19 43371850 43371850 T A PSG1 3'UTR 0.16 TCGA-D3-A8GS-06 19 46299264 46299264 G A RSPH6A Missense_Mutation p.P673S 0.32 deleterious(0.01) possibly_damaging(0.904) TCGA-D3-A8GS-06 19 46832687 46832687 C T HIF3A Missense_Mutation p.S555F 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-D3-A8GS-06 19 48878997 48878997 C T SYNGR4 Silent p.S153S 0.14 TCGA-D3-A8GS-06 19 52146843 52146843 G A SIGLEC14 Silent p.L365L 0.24 TCGA-D3-A8GS-06 19 52709250 52709250 C T PPP2R1A Silent p.A68A 0.25 TCGA-D3-A8GS-06 19 58806403 58806403 C T ZNF8 Missense_Mutation p.S410L 0.18 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GS-06 19 6924856 6924856 C T EMR1 Silent p.L653L 0.08 TCGA-D3-A8GS-06 19 7806799 7806799 G A CD209 3'UTR 0.47 TCGA-D3-A8GS-06 19 891149 891149 C T MED16 Intron 0.30 TCGA-D3-A8GS-06 19 9204731 9204731 G A OR1M1 Missense_Mutation p.E271K 0.29 deleterious(0.02) possibly_damaging(0.755) TCGA-D3-A8GS-06 1 10042789 10042789 C T NMNAT1 3'UTR 0.32 TCGA-D3-A8GS-06 1 112524584 112524584 G A KCND3 Silent p.I255I 0.30 TCGA-D3-A8GS-06 1 115428225 115428225 T A SYCP1 Missense_Mutation p.I327N 0.22 deleterious(0.03) possibly_damaging(0.511) TCGA-D3-A8GS-06 1 116228029 116228029 C T VANGL1 Missense_Mutation p.P399S 0.23 deleterious(0.05) possibly_damaging(0.589) TCGA-D3-A8GS-06 1 118537049 118537049 C T SPAG17 Missense_Mutation p.E1720K 0.18 tolerated(0.09) possibly_damaging(0.525) TCGA-D3-A8GS-06 1 1267632 1267632 G A TAS1R3 Missense_Mutation p.G241S 0.38 tolerated(0.1) possibly_damaging(0.71) TCGA-D3-A8GS-06 1 145507696 145507696 T A RBM8A Silent p.A10A 0.20 TCGA-D3-A8GS-06 1 153312916 153312916 C T PGLYRP4 Silent p.L255L 0.31 TCGA-D3-A8GS-06 1 155167320 155167320 C T THBS3 Silent p.Q811Q 0.16 TCGA-D3-A8GS-06 1 157485478 157485478 G A FCRL5 Missense_Mutation p.A974V 0.13 tolerated(0.05) benign(0.313) TCGA-D3-A8GS-06 1 157771943 157771943 C T FCRL1 Silent p.R216R 0.20 TCGA-D3-A8GS-06 1 158609467 158609467 A T SPTA1 Missense_Mutation p.L1629M 0.13 deleterious(0.04) probably_damaging(1) TCGA-D3-A8GS-06 1 16273443 16273443 G T ZBTB17 Silent p.A127A 0.24 TCGA-D3-A8GS-06 1 168014272 168014272 G A DCAF6 Missense_Mutation p.D689N 0.12 tolerated_low_confidence(0.23) benign(0.199) TCGA-D3-A8GS-06 1 173486714 173486714 C T SLC9C2 Missense_Mutation p.E957K 0.26 deleterious(0.03) probably_damaging(1) TCGA-D3-A8GS-06 1 186034496 186034496 G A HMCN1 Missense_Mutation p.R2547K 0.10 probably_damaging(0.987) TCGA-D3-A8GS-06 1 18808346 18808346 G A KLHDC7A Missense_Mutation p.D291N 0.28 deleterious(0.04) benign(0.139) TCGA-D3-A8GS-06 1 193110982 193110982 C T CDC73 Missense_Mutation p.S172F 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-D3-A8GS-06 1 19426980 19426980 G A UBR4 Missense_Mutation p.P4371S 0.22 probably_damaging(0.992) TCGA-D3-A8GS-06 1 201332473 201332473 T G TNNT2 Missense_Mutation p.K174T 0.24 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GS-06 1 20517403 20517403 C T UBXN10 Missense_Mutation p.L117F 0.19 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GS-06 1 215914801 215914801 T G USH2A Missense_Mutation p.K3876T 0.10 benign(0.003) TCGA-D3-A8GS-06 1 22205575 22205575 A C HSPG2 Missense_Mutation p.C795G 0.31 probably_damaging(1) TCGA-D3-A8GS-06 1 226570772 226570772 G A PARP1 Missense_Mutation p.S375L 0.25 tolerated(0.16) benign(0.003) TCGA-D3-A8GS-06 1 22987466 22987466 A C C1QB Missense_Mutation p.K117Q 0.23 deleterious(0.01) possibly_damaging(0.828) TCGA-D3-A8GS-06 1 241032119 241032119 G T RGS7 Silent p.R162R 0.25 TCGA-D3-A8GS-06 1 248737997 248737997 C T OR2T34 Missense_Mutation p.G21E 0.11 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GS-06 1 27683594 27683594 G A MAP3K6 Silent p.I1090I 0.21 TCGA-D3-A8GS-06 1 35227157 35227157 G A GJB4 Missense_Mutation p.R101H 0.41 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GS-06 1 39799931 39799931 C T MACF1 Intron 0.05 TCGA-D3-A8GS-06 1 43900961 43900961 C T SZT2 Missense_Mutation p.P1942S 0.15 tolerated(0.8) benign(0.012) TCGA-D3-A8GS-06 1 43900962 43900962 C T SZT2 Missense_Mutation p.P1942L 0.15 tolerated(0.79) benign(0.001) TCGA-D3-A8GS-06 1 43907705 43907705 C T SZT2 Missense_Mutation p.P2536S 0.25 tolerated(0.41) benign(0.007) TCGA-D3-A8GS-06 1 75036823 75036823 G A C1orf173 Missense_Mutation p.S1524F 0.10 tolerated(0.06) probably_damaging(0.948) TCGA-D3-A8GS-06 1 75039153 75039153 C T C1orf173 Silent p.V747V 0.12 TCGA-D3-A8GS-06 1 92612738 92612738 C T BTBD8 Missense_Mutation p.P311L 0.23 deleterious(0.02) benign(0.06) TCGA-D3-A8GS-06 1 979306 979306 C T AGRN Silent p.S634S 0.19 TCGA-D3-A8GS-06 20 44531127 44531127 G A PLTP Silent p.A353A 0.16 TCGA-D3-A8GS-06 20 44531128 44531128 G A PLTP Missense_Mutation p.A353V 0.16 tolerated(0.53) benign(0.152) TCGA-D3-A8GS-06 21 37833660 37833660 G A CLDN14 Missense_Mutation p.P112S 0.21 tolerated(0.49) benign(0.002) TCGA-D3-A8GS-06 21 39580335 39580335 C T DSCR10 RNA 0.21 TCGA-D3-A8GS-06 21 41427750 41427750 G A DSCAM Missense_Mutation p.S1646L 0.22 tolerated(1) benign(0.002) TCGA-D3-A8GS-06 21 45929186 45929186 C T TSPEAR Silent p.V550V 0.13 TCGA-D3-A8GS-06 21 47786715 47786715 G A PCNT Silent p.L942L 0.23 TCGA-D3-A8GS-06 22 17672605 17672605 A T CECR1 Missense_Mutation p.F283L 0.30 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GS-06 22 20229456 20229456 G A RTN4R Silent p.P400P 0.36 TCGA-D3-A8GS-06 22 29695307 29695307 C T EWSR1 Missense_Mutation p.P560L 0.17 tolerated_low_confidence(0.05) unknown(0) TCGA-D3-A8GS-06 22 29695308 29695308 C T EWSR1 Silent p.P560P 0.17 TCGA-D3-A8GS-06 22 32546312 32546312 C T C22orf42 Silent p.P216P 0.20 TCGA-D3-A8GS-06 22 39078419 39078419 C T TOMM22 Missense_Mutation p.S70F 0.21 deleterious(0.03) benign(0.166) TCGA-D3-A8GS-06 22 42177681 42177681 C T MEI1 Intron 0.30 TCGA-D3-A8GS-06 2 108922034 108922034 C T SULT1C2 Missense_Mutation p.S265F 0.19 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GS-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.20 TCGA-D3-A8GS-06 2 128412098 128412098 C T LIMS2 Missense_Mutation p.V111I 0.18 deleterious(0.03) possibly_damaging(0.602) TCGA-D3-A8GS-06 2 128884932 128884932 C T UGGT1 Intron 0.24 TCGA-D3-A8GS-06 2 141294269 141294269 G A LRP1B Missense_Mutation p.S2508F 0.40 possibly_damaging(0.788) TCGA-D3-A8GS-06 2 165946699 165946699 T A SCN3A Missense_Mutation p.K1988N 0.30 tolerated_low_confidence(0.07) benign(0.026) TCGA-D3-A8GS-06 2 165984417 165984417 G A SCN3A Silent p.I1039I 0.36 TCGA-D3-A8GS-06 2 166179856 166179856 G A SCN2A Missense_Mutation p.R621H 0.18 deleterious(0.04) benign(0.246) TCGA-D3-A8GS-06 2 179454411 179454411 C T TTN Missense_Mutation p.G20681R 0.12 TCGA-D3-A8GS-06 2 179481355 179481355 G A TTN Missense_Mutation p.R16055C 0.27 TCGA-D3-A8GS-06 2 179614138 179614138 C T TTN Intron 0.14 TCGA-D3-A8GS-06 2 179615417 179615417 C T TTN Intron 0.29 TCGA-D3-A8GS-06 2 179639810 179639810 C T TTN Missense_Mutation p.D2210N 0.26 TCGA-D3-A8GS-06 2 179641241 179641241 C T TTN Missense_Mutation p.G1784R 0.36 TCGA-D3-A8GS-06 2 196729333 196729333 G A DNAH7 Missense_Mutation p.S2349F 0.47 deleterious(0) probably_damaging(1) TCGA-D3-A8GS-06 2 210595031 210595031 C T MAP2 Silent p.S1798S 0.30 TCGA-D3-A8GS-06 2 211473156 211473156 C T CPS1 Missense_Mutation p.S761F 0.44 deleterious(0) possibly_damaging(0.724) TCGA-D3-A8GS-06 2 232392848 232392848 A C NMUR1 Missense_Mutation p.V295G 0.14 deleterious(0.03) possibly_damaging(0.794) TCGA-D3-A8GS-06 2 234750138 234750138 G A HJURP Missense_Mutation p.R430C 0.11 tolerated(0.12) possibly_damaging(0.684) TCGA-D3-A8GS-06 2 241817562 241817562 G A AGXT Missense_Mutation p.G356R 0.24 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GS-06 2 48950766 48950766 G A LHCGR Silent p.F151F 0.17 TCGA-D3-A8GS-06 2 54891646 54891646 G A SPTBN1 Silent p.T2159T 0.17 TCGA-D3-A8GS-06 2 71797455 71797455 G A DYSF Missense_Mutation p.D1026N 0.27 deleterious(0.02) probably_damaging(0.948) TCGA-D3-A8GS-06 2 74475605 74475605 C T SLC4A5 Missense_Mutation p.M554I 0.38 tolerated(0.6) benign(0.068) TCGA-D3-A8GS-06 2 74783702 74783702 C T DOK1 Silent p.L303L 0.08 TCGA-D3-A8GS-06 3 108677628 108677628 C T MORC1 3'UTR 0.27 TCGA-D3-A8GS-06 3 113222069 113222069 G A SPICE1 Silent p.T35T 0.16 TCGA-D3-A8GS-06 3 113222070 113222070 G A SPICE1 Missense_Mutation p.T35I 0.16 deleterious(0) probably_damaging(0.968) TCGA-D3-A8GS-06 3 124826611 124826611 C T SLC12A8 Silent p.E473E 0.28 TCGA-D3-A8GS-06 3 130287112 130287112 A G COL6A6 Missense_Mutation p.I689V 0.30 tolerated(0.07) probably_damaging(0.994) TCGA-D3-A8GS-06 3 164785148 164785148 C T SI Silent p.R205R 0.22 TCGA-D3-A8GS-06 3 179134302 179134302 C T GNB4 Nonsense_Mutation p.W82* 0.12 TCGA-D3-A8GS-06 3 180327541 180327541 C A TTC14 Missense_Mutation p.N508K 0.23 tolerated(0.37) unknown(0) TCGA-D3-A8GS-06 3 180702401 180702401 G A DNAJC19 3'UTR 0.21 TCGA-D3-A8GS-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.34 deleterious(0.05) benign(0.012) TCGA-D3-A8GS-06 3 2928775 2928775 G A CNTN4 Silent p.R269R 0.13 TCGA-D3-A8GS-06 3 41274897 41274897 T G CTNNB1 Missense_Mutation p.W383G 0.10 deleterious(0) possibly_damaging(0.745) TCGA-D3-A8GS-06 3 42610433 42610433 G A SEC22C Missense_Mutation p.R36W 0.29 deleterious(0.01) possibly_damaging(0.762) TCGA-D3-A8GS-06 3 47125622 47125622 A C SETD2 Missense_Mutation p.I1883S 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-D3-A8GS-06 3 47125638 47125638 A G SETD2 Missense_Mutation p.F1878L 0.21 tolerated(0.1) benign(0.009) TCGA-D3-A8GS-06 3 50405594 50405594 C T CACNA2D2 Silent p.E713E 0.16 TCGA-D3-A8GS-06 3 53222865 53222865 C T PRKCD Silent p.I515I 0.14 TCGA-D3-A8GS-06 3 65464283 65464283 C T MAGI1 Missense_Mutation p.M247I 0.22 tolerated(0.18) probably_damaging(0.96) TCGA-D3-A8GS-06 3 74420536 74420536 A T CNTN3 Missense_Mutation p.W157R 0.17 deleterious(0) probably_damaging(1) TCGA-D3-A8GS-06 3 7456758 7456758 A G GRM7 Missense_Mutation p.N361S 0.24 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GS-06 4 100203562 100203562 C T ADH1A Missense_Mutation p.E257K 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-D3-A8GS-06 4 100434277 100434277 G A C4orf17 Silent p.E13E 0.38 TCGA-D3-A8GS-06 4 114271390 114271390 A T ANK2 Missense_Mutation p.M1471L 0.17 benign(0.008) TCGA-D3-A8GS-06 4 115858614 115858614 G A NDST4 Missense_Mutation p.H423Y 0.10 deleterious(0.02) probably_damaging(0.988) TCGA-D3-A8GS-06 4 118975668 118975668 G A NDST3 Silent p.L201L 0.10 TCGA-D3-A8GS-06 4 126329645 126329645 G A FAT4 Silent p.V1872V 0.36 TCGA-D3-A8GS-06 4 1346914 1346914 C T UVSSA Missense_Mutation p.S216F 0.44 tolerated(0.75) benign(0.005) TCGA-D3-A8GS-06 4 154557633 154557633 C T KIAA0922 Missense_Mutation p.R1580C 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-D3-A8GS-06 4 158065074 158065074 G A GLRB Nonsense_Mutation p.W289* 0.32 TCGA-D3-A8GS-06 4 167983644 167983644 C T SPOCK3 Silent p.Q81Q 0.16 TCGA-D3-A8GS-06 4 17524614 17524614 G A CLRN2 Silent p.P127P 0.52 TCGA-D3-A8GS-06 4 175565172 175565172 C T GLRA3 Missense_Mutation p.G387E 0.36 tolerated(0.06) benign(0.043) TCGA-D3-A8GS-06 4 175565193 175565193 C T GLRA3 Missense_Mutation p.R380Q 0.33 tolerated(0.13) benign(0.003) TCGA-D3-A8GS-06 4 266220 266220 C T ZNF732 Silent p.Q142Q 0.57 TCGA-D3-A8GS-06 4 39408949 39408949 C T KLB Missense_Mutation p.S127F 0.19 tolerated(0.08) benign(0.05) TCGA-D3-A8GS-06 4 55981166 55981166 G A KDR Missense_Mutation p.S178F 0.33 tolerated(0.62) benign(0.002) TCGA-D3-A8GS-06 4 5961249 5961249 C A C4orf50 Missense_Mutation p.M702I 0.12 tolerated(0.41) benign(0.013) TCGA-D3-A8GS-06 4 6865766 6865766 G A KIAA0232 Silent p.L1219L 0.09 TCGA-D3-A8GS-06 4 69536266 69536266 C T UGT2B15 Missense_Mutation p.G24E 0.19 deleterious(0.04) possibly_damaging(0.873) TCGA-D3-A8GS-06 4 71396882 71396882 C T AMTN Missense_Mutation p.P162S 0.38 tolerated_low_confidence(0.18) benign(0.137) TCGA-D3-A8GS-06 4 88767492 88767492 C T MEPE Missense_Mutation p.S491F 0.41 tolerated(0.13) benign(0.139) TCGA-D3-A8GS-06 4 98480246 98480246 C T STPG2 Missense_Mutation p.G448E 0.14 tolerated_low_confidence(0.91) benign(0) TCGA-D3-A8GS-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.15 TCGA-D3-A8GS-06 5 118877666 118877666 C T HSD17B4 Missense_Mutation p.L755F 0.19 tolerated(0.31) benign(0.071) TCGA-D3-A8GS-06 5 121759238 121759238 G A SNCAIP Missense_Mutation p.R269Q 0.18 tolerated(0.83) benign(0.184) TCGA-D3-A8GS-06 5 128320900 128320900 G C SLC27A6 Missense_Mutation p.V186L 0.06 tolerated(0.84) benign(0.021) TCGA-D3-A8GS-06 5 128369044 128369044 G A SLC27A6 3'UTR 0.31 TCGA-D3-A8GS-06 5 132150919 132150919 G A SOWAHA Missense_Mutation p.G536R 0.14 deleterious_low_confidence(0.04) benign(0.06) TCGA-D3-A8GS-06 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.26 TCGA-D3-A8GS-06 5 140221973 140221973 C T PCDHA8 Missense_Mutation p.S356F 0.22 deleterious_low_confidence(0.03) benign(0.068) TCGA-D3-A8GS-06 5 140348733 140348733 G A PCDHAC2 Silent p.K794K 0.31 TCGA-D3-A8GS-06 5 140588661 140588661 C T PCDHB12 Missense_Mutation p.S61L 0.15 deleterious_low_confidence(0.05) benign(0.014) TCGA-D3-A8GS-06 5 140719911 140719911 C T PCDHGA2 Missense_Mutation p.S458F 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.583) TCGA-D3-A8GS-06 5 140719912 140719912 C A PCDHGA2 Silent p.S458S 0.19 TCGA-D3-A8GS-06 5 140755352 140755352 C T PCDHGA6 Missense_Mutation p.P568S 0.26 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-D3-A8GS-06 5 153149865 153149865 C T GRIA1 Silent p.S730S 0.27 TCGA-D3-A8GS-06 5 179249927 179249927 G A SQSTM1 Intron 0.12 TCGA-D3-A8GS-06 5 180659685 180659685 G A TRIM41 Silent p.A312A 0.09 TCGA-D3-A8GS-06 5 35957434 35957434 C T UGT3A1 Missense_Mutation p.E311K 0.21 tolerated(0.07) benign(0.015) TCGA-D3-A8GS-06 5 38490352 38490352 C A LIFR Nonsense_Mutation p.G703* 0.11 TCGA-D3-A8GS-06 5 42718639 42718639 G A GHR Missense_Mutation p.E344K 0.26 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GS-06 5 54424441 54424441 C T CDC20B Silent p.L234L 0.26 TCGA-D3-A8GS-06 5 54603748 54603748 C T SKIV2L2 5'UTR 0.23 TCGA-D3-A8GS-06 5 79027795 79027795 C T CMYA5 Silent p.F1069F 0.41 TCGA-D3-A8GS-06 5 82816073 82816073 C T VCAN Missense_Mutation p.R650C 0.24 tolerated(0.17) benign(0.243) TCGA-D3-A8GS-06 5 95224802 95224802 C T ELL2 Silent p.Q598Q 0.18 TCGA-D3-A8GS-06 5 95728985 95728985 C T PCSK1 Missense_Mutation p.G661E 0.16 tolerated_low_confidence(0.8) benign(0.035) TCGA-D3-A8GS-06 6 10898292 10898292 C T SYCP2L Silent p.L129L 0.24 TCGA-D3-A8GS-06 6 11191048 11191048 G A NEDD9 Missense_Mutation p.P352S 0.27 tolerated(0.29) benign(0.004) TCGA-D3-A8GS-06 6 146351032 146351032 C T GRM1 Silent p.L127L 0.33 TCGA-D3-A8GS-06 6 152787148 152787148 T G SYNE1 Silent p.T566T 0.17 TCGA-D3-A8GS-06 6 160858182 160858182 C T SLC22A3 Silent p.P409P 0.20 TCGA-D3-A8GS-06 6 167721351 167721351 C T UNC93A Missense_Mutation p.S354F 0.20 deleterious(0) benign(0.101) TCGA-D3-A8GS-06 6 54806046 54806046 G T FAM83B Missense_Mutation p.K759N 0.17 tolerated(0.11) benign(0.17) TCGA-D3-A8GS-06 6 57055328 57055328 G A RAB23 Silent p.I215I 0.09 TCGA-D3-A8GS-06 7 100491374 100491374 G A ACHE Silent p.S160S 0.25 TCGA-D3-A8GS-06 7 126086240 126086240 C G GRM8 Missense_Mutation p.G873R 0.30 deleterious(0.05) possibly_damaging(0.621) TCGA-D3-A8GS-06 7 129939190 129939190 A G CPA4 Silent p.K77K 0.36 TCGA-D3-A8GS-06 7 135333240 135333240 G T NUP205 Missense_Mutation p.R1992L 0.25 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GS-06 7 137761177 137761177 C T AKR1D1 5'Flank 0.26 TCGA-D3-A8GS-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GS-06 7 142627161 142627161 G A TRPV5 Missense_Mutation p.A114V 0.28 tolerated(0.23) benign(0.102) TCGA-D3-A8GS-06 7 143747858 143747858 C T OR2A5 Missense_Mutation p.R122W 0.35 deleterious(0.03) benign(0.246) TCGA-D3-A8GS-06 7 143772131 143772131 C T OR2A25 Silent p.L273L 0.30 TCGA-D3-A8GS-06 7 148767422 148767422 C T ZNF786 3'UTR 0.33 TCGA-D3-A8GS-06 7 18767241 18767241 G A HDAC9 Silent p.V590V 0.44 TCGA-D3-A8GS-06 7 23830510 23830510 G A STK31 Missense_Mutation p.G902E 0.36 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GS-06 7 29943940 29943940 G T WIPF3 Missense_Mutation p.G464W 0.17 deleterious_low_confidence(0) unknown(0) TCGA-D3-A8GS-06 7 57528949 57528949 G A ZNF716 Missense_Mutation p.R261K 0.20 tolerated(0.76) benign(0.378) TCGA-D3-A8GS-06 7 64292958 64292958 C T ZNF138 3'Flank 0.47 TCGA-D3-A8GS-06 7 92730943 92730943 C T SAMD9 Missense_Mutation p.E1490K 0.17 tolerated(0.15) benign(0.014) TCGA-D3-A8GS-06 8 101153923 101153923 C - FBXO43 Frame_Shift_Del p.E187Kfs*20 0.17 TCGA-D3-A8GS-06 8 105544185 105544185 C A LRP12 Missense_Mutation p.G29V 0.22 deleterious_low_confidence(0.02) benign(0.01) TCGA-D3-A8GS-06 8 110099909 110099909 G A TRHR Missense_Mutation p.M56I 0.28 deleterious(0) probably_damaging(0.991) TCGA-D3-A8GS-06 8 133036845 133036845 G A OC90 Silent p.G439G 0.23 TCGA-D3-A8GS-06 8 135613954 135613954 G A ZFAT Missense_Mutation p.P670S 0.31 tolerated(0.36) benign(0.024) TCGA-D3-A8GS-06 8 24170917 24170917 G A ADAM28 Missense_Mutation p.G134R 0.17 tolerated(0.69) probably_damaging(0.949) TCGA-D3-A8GS-06 8 24810332 24810332 C T CTD-2168K21.2 5'Flank 0.29 TCGA-D3-A8GS-06 8 30032635 30032635 T A DCTN6 Silent p.I41I 0.30 TCGA-D3-A8GS-06 8 30938497 30938497 A T WRN Missense_Mutation p.L318F 0.22 tolerated(0.29) benign(0.008) TCGA-D3-A8GS-06 8 62489393 62489393 C G ASPH Missense_Mutation p.A363P 0.07 deleterious(0) possibly_damaging(0.864) TCGA-D3-A8GS-06 9 101747907 101747907 C T COL15A1 Missense_Mutation p.S54F 0.27 deleterious(0) probably_damaging(0.976) TCGA-D3-A8GS-06 9 102590356 102590356 C T NR4A3 Missense_Mutation p.S22F 0.28 deleterious(0) possibly_damaging(0.8) TCGA-D3-A8GS-06 9 102590357 102590357 C T NR4A3 Silent p.S22S 0.28 TCGA-D3-A8GS-06 9 104432839 104432839 C T GRIN3A Missense_Mutation p.D619N 0.27 deleterious(0) probably_damaging(0.969) TCGA-D3-A8GS-06 9 140508330 140508330 G A ARRDC1 Intron 0.50 TCGA-D3-A8GS-06 9 70177111 70177111 C T FOXD4L5 Silent p.A291A 0.21 TCGA-D3-A8GS-06 X 1413224 1413224 G A CSF2RA Missense_Mutation p.R217Q 0.26 tolerated(0.33) benign(0.098) TCGA-D3-A8GS-06 X 3241688 3241688 C T MXRA5 Missense_Mutation p.G680S 0.34 tolerated(0.09) possibly_damaging(0.78) TCGA-D3-A8GS-06 X 67433745 67433745 G A OPHN1 Nonsense_Mutation p.Q186* 0.64 TCGA-D3-A8GS-06 X 84534289 84534289 C T POF1B 3'UTR 0.27 TCGA-D3-A8GS-06 Y 9195456 9195456 G A TSPY8 Missense_Mutation p.R2H 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.468) TCGA-D3-A8GV-06 10 100221519 100221519 G A HPSE2 Intron 1.00 TCGA-D3-A8GV-06 10 115610339 115610339 G A DCLRE1A Silent p.F175F 0.86 TCGA-D3-A8GV-06 10 128192779 128192779 G A C10orf90 Silent p.L330L 0.94 TCGA-D3-A8GV-06 10 129910022 129910022 G A MKI67 Missense_Mutation p.T716I 0.76 deleterious(0) probably_damaging(0.997) TCGA-D3-A8GV-06 10 13040360 13040360 C A CCDC3 Missense_Mutation p.W176L 0.47 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-D3-A8GV-06 10 20506502 20506502 G A PLXDC2 Missense_Mutation p.E424K 0.42 tolerated(0.08) possibly_damaging(0.504) TCGA-D3-A8GV-06 10 21157653 21157653 G A NEBL Silent p.P208P 0.37 TCGA-D3-A8GV-06 10 28903596 28903596 G A WAC Missense_Mutation p.R513Q 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GV-06 10 30316614 30316614 C T KIAA1462 Silent p.L821L 0.47 TCGA-D3-A8GV-06 10 30317149 30317149 C T KIAA1462 Missense_Mutation p.G643E 0.43 tolerated(0.1) probably_damaging(0.961) TCGA-D3-A8GV-06 10 31138919 31138919 G A ZNF438 Silent p.L139L 0.43 TCGA-D3-A8GV-06 10 3202449 3202449 G A PITRM1 Nonsense_Mutation p.Q289* 0.32 TCGA-D3-A8GV-06 10 33469163 33469163 C T NRP1 Silent p.L871L 0.40 TCGA-D3-A8GV-06 10 37431005 37431005 G A ANKRD30A Missense_Mutation p.E338K 0.46 tolerated(1) benign(0.292) TCGA-D3-A8GV-06 10 48390162 48390162 G A RBP3 Missense_Mutation p.A239V 0.48 deleterious(0) probably_damaging(0.992) TCGA-D3-A8GV-06 10 49431207 49431207 G A FRMPD2 Silent p.F425F 0.31 TCGA-D3-A8GV-06 10 52005127 52005127 T G ASAH2 Missense_Mutation p.H72P 0.39 tolerated_low_confidence(0.23) benign(0.024) TCGA-D3-A8GV-06 10 61835701 61835701 G A ANK3 Silent p.S1646S 0.89 TCGA-D3-A8GV-06 10 72489990 72489990 G A ADAMTS14 Missense_Mutation p.D363N 1.00 tolerated(0.16) benign(0.075) TCGA-D3-A8GV-06 10 74673107 74673107 C T OIT3 Missense_Mutation p.P278S 0.85 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GV-06 11 100179122 100179122 G A CNTN5 Silent p.A884A 0.45 TCGA-D3-A8GV-06 11 100221532 100221532 G A CNTN5 Missense_Mutation p.E1044K 0.35 deleterious(0) possibly_damaging(0.814) TCGA-D3-A8GV-06 11 100922294 100922294 G A PGR Nonsense_Mutation p.R740* 0.38 TCGA-D3-A8GV-06 11 100933285 100933285 C T PGR Missense_Mutation p.G702E 0.48 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GV-06 11 101761956 101761956 A - ANGPTL5 3'UTR 0.38 TCGA-D3-A8GV-06 11 108180964 108180964 C A ATM Missense_Mutation p.S1947Y 0.84 tolerated(0.19) benign(0.258) TCGA-D3-A8GV-06 11 112089337 112089337 G A BCO2 3'UTR 0.81 TCGA-D3-A8GV-06 11 123900899 123900899 C T OR10G8 Silent p.D190D 0.92 TCGA-D3-A8GV-06 11 124189926 124189926 G A OR8D2 Silent p.Y56Y 0.86 TCGA-D3-A8GV-06 11 1262099 1262099 C T MUC5B Missense_Mutation p.S1330F 0.32 unknown(0) TCGA-D3-A8GV-06 11 1272724 1272724 G A MUC5B Missense_Mutation p.G4872R 0.50 unknown(0) TCGA-D3-A8GV-06 11 19954939 19954939 C T NAV2 Silent p.A406A 0.52 TCGA-D3-A8GV-06 11 4388655 4388655 G T OR52B4 Missense_Mutation p.P291T 0.46 deleterious(0) probably_damaging(0.959) TCGA-D3-A8GV-06 11 48267482 48267482 C T OR4X2 Missense_Mutation p.P276L 0.43 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 11 4968325 4968325 G A OR51A4 Silent p.S2S 0.38 TCGA-D3-A8GV-06 11 5010949 5010949 C T MMP26 Silent p.L57L 0.46 TCGA-D3-A8GV-06 11 55063034 55063034 C T TRIM51HP RNA 0.53 TCGA-D3-A8GV-06 11 55135906 55135906 C T OR4A15 Missense_Mutation p.H183Y 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-D3-A8GV-06 11 5536103 5536103 G A UBQLNL 3'UTR 0.27 TCGA-D3-A8GV-06 11 55606310 55606310 C T OR5D16 Missense_Mutation p.P28L 0.48 tolerated(0.1) benign(0.016) TCGA-D3-A8GV-06 11 55861055 55861055 C T OR8I2 Missense_Mutation p.S91F 0.50 tolerated(0.13) benign(0.045) TCGA-D3-A8GV-06 11 55890100 55890100 G A OR8H3 Silent p.A84A 0.37 TCGA-D3-A8GV-06 11 58477111 58477111 C T GLYAT 3'UTR 0.71 TCGA-D3-A8GV-06 11 59271586 59271586 G A OR4D11 Missense_Mutation p.D180N 0.36 deleterious(0.02) benign(0.355) TCGA-D3-A8GV-06 11 6231446 6231446 C T C11orf42 Nonsense_Mutation p.Q147* 0.34 TCGA-D3-A8GV-06 11 62985111 62985111 G A SLC22A25 Silent p.S201S 0.54 TCGA-D3-A8GV-06 11 65373267 65373267 G A MAP3K11 Missense_Mutation p.P599L 0.30 tolerated(0.09) benign(0.177) TCGA-D3-A8GV-06 11 66358867 66358867 G A CCDC87 Silent p.I540I 0.41 TCGA-D3-A8GV-06 11 66394001 66394001 C T RBM14 Silent p.F624F 0.49 TCGA-D3-A8GV-06 11 66812169 66812169 G A SYT12 Missense_Mutation p.D315N 0.39 tolerated(0.3) benign(0.003) TCGA-D3-A8GV-06 11 76982220 76982220 G A GDPD4 Missense_Mutation p.L119F 0.47 tolerated(0.11) benign(0.315) TCGA-D3-A8GV-06 11 7720315 7720315 G A OVCH2 Missense_Mutation p.R303W 0.29 deleterious(0.03) benign(0.006) TCGA-D3-A8GV-06 11 7847156 7847156 G A OR5P3 Missense_Mutation p.R122C 0.52 deleterious(0.01) benign(0.165) TCGA-D3-A8GV-06 11 89644785 89644785 G A TRIM49D1 Silent p.L443L 0.29 TCGA-D3-A8GV-06 11 92531562 92531562 C T FAT3 Missense_Mutation p.P1795S 0.24 probably_damaging(1) TCGA-D3-A8GV-06 11 92531563 92531563 C A FAT3 Missense_Mutation p.P1795Q 0.24 probably_damaging(1) TCGA-D3-A8GV-06 12 104126781 104126781 C T STAB2 Intron 0.66 TCGA-D3-A8GV-06 12 133434138 133434138 G A CHFR Missense_Mutation p.P319S 0.57 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 12 14836052 14836052 C T GUCY2C Missense_Mutation p.D179N 0.42 tolerated(0.89) benign(0.001) TCGA-D3-A8GV-06 12 15654856 15654856 G A PTPRO Missense_Mutation p.E322K 0.45 deleterious_low_confidence(0.04) benign(0.005) TCGA-D3-A8GV-06 12 20893266 20893266 C T SLCO1C1 Missense_Mutation p.S566F 0.45 deleterious(0) possibly_damaging(0.53) TCGA-D3-A8GV-06 12 49444810 49444810 G A KMT2D Missense_Mutation p.P886S 0.61 unknown(0) TCGA-D3-A8GV-06 12 50189513 50189513 G A NCKAP5L Silent p.P710P 0.29 TCGA-D3-A8GV-06 12 52639414 52639414 C T KRT7 Silent p.S401S 0.63 TCGA-D3-A8GV-06 12 52685262 52685262 C T KRT81 5'UTR 0.14 TCGA-D3-A8GV-06 12 54920498 54920498 G A NCKAP1L Silent p.G781G 0.70 TCGA-D3-A8GV-06 12 5604102 5604102 G A NTF3 Missense_Mutation p.R254Q 0.43 deleterious(0) possibly_damaging(0.893) TCGA-D3-A8GV-06 12 56359959 56359959 C T PMEL 5'Flank 0.33 TCGA-D3-A8GV-06 12 56514752 56514752 G A ZC3H10 Missense_Mutation p.E136K 0.42 deleterious(0.01) possibly_damaging(0.862) TCGA-D3-A8GV-06 12 56740671 56740671 A G STAT2 Missense_Mutation p.F598S 0.29 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 12 57036529 57036529 G A ATP5B Silent p.F293F 0.64 TCGA-D3-A8GV-06 12 57110960 57110960 G A NACA Intron 0.35 TCGA-D3-A8GV-06 12 57585131 57585131 C G LRP1 Missense_Mutation p.P2422R 0.52 probably_damaging(0.954) TCGA-D3-A8GV-06 12 65514304 65514304 C T WIF1 Missense_Mutation p.G61R 0.48 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 12 66700127 66700127 C T HELB Missense_Mutation p.P204S 0.27 deleterious(0.03) benign(0.434) TCGA-D3-A8GV-06 12 69084523 69084523 C T NUP107 Silent p.S100S 0.69 TCGA-D3-A8GV-06 12 7476094 7476094 G A ACSM4 Missense_Mutation p.E416K 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-D3-A8GV-06 12 7651714 7651714 G A CD163 Silent p.F176F 0.49 TCGA-D3-A8GV-06 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.64 tolerated(1) benign(0.007) TCGA-D3-A8GV-06 13 28014305 28014305 C T MTIF3 Missense_Mutation p.G94D 0.78 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 13 28014306 28014306 C T MTIF3 Missense_Mutation p.G94S 0.79 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 13 79219015 79219015 G A RNF219 Missense_Mutation p.P64S 0.81 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GV-06 13 99100621 99100621 C T FARP1 3'UTR 0.95 TCGA-D3-A8GV-06 14 105420026 105420026 G A AHNAK2 Missense_Mutation p.P588S 0.43 probably_damaging(0.962) TCGA-D3-A8GV-06 14 106586365 106586365 G A IGHV3-13 Silent p.S40S 0.43 TCGA-D3-A8GV-06 14 20248583 20248583 C T OR4M1 Silent p.F34F 0.25 TCGA-D3-A8GV-06 14 20296208 20296208 T G OR4N2 Missense_Mutation p.F201V 0.04 tolerated(0.34) possibly_damaging(0.555) TCGA-D3-A8GV-06 14 20404050 20404050 C T OR4K1 Silent p.N75N 0.19 TCGA-D3-A8GV-06 14 20404501 20404501 C T OR4K1 Nonsense_Mutation p.R226* 0.18 TCGA-D3-A8GV-06 14 21871637 21871637 G A CHD8 Silent p.L1165L 0.25 TCGA-D3-A8GV-06 14 23345315 23345315 C T LRP10 Silent p.F386F 0.41 TCGA-D3-A8GV-06 14 24546973 24546973 C T CPNE6 3'UTR 0.31 TCGA-D3-A8GV-06 14 24608166 24608166 A G PSME1 3'UTR 0.58 TCGA-D3-A8GV-06 14 31122771 31122771 C T SCFD1 Nonsense_Mutation p.Q278* 0.45 TCGA-D3-A8GV-06 14 42360624 42360624 C T LRFN5 Silent p.F519F 0.46 TCGA-D3-A8GV-06 14 50844992 50844992 C T CDKL1 Intron 0.48 TCGA-D3-A8GV-06 14 51383447 51383447 G A PYGL Silent p.A335A 0.54 TCGA-D3-A8GV-06 14 60591906 60591906 C T PCNXL4 Missense_Mutation p.S772F 0.30 deleterious(0) probably_damaging(0.981) TCGA-D3-A8GV-06 14 63174875 63174875 G A KCNH5 Missense_Mutation p.S773F 0.49 tolerated(0.08) benign(0.048) TCGA-D3-A8GV-06 14 71489918 71489918 G C PCNX Missense_Mutation p.S1051T 0.19 deleterious(0) probably_damaging(0.993) TCGA-D3-A8GV-06 14 77712968 77712968 C T TMEM63C Missense_Mutation p.R518C 0.89 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GV-06 14 89205343 89205343 T C EML5 Missense_Mutation p.M243V 1.00 tolerated(0.05) benign(0.187) TCGA-D3-A8GV-06 14 92608650 92608650 C T CPSF2 Silent p.L268L 0.47 TCGA-D3-A8GV-06 14 94245648 94245648 C T PRIMA1 Missense_Mutation p.G35S 0.54 deleterious(0.05) benign(0.036) TCGA-D3-A8GV-06 14 96178606 96178606 C T TCL1A Missense_Mutation p.R83Q 0.44 tolerated(0.19) benign(0.416) TCGA-D3-A8GV-06 15 22332721 22332721 C T RP11-69H14.6 RNA 0.19 TCGA-D3-A8GV-06 15 25330397 25330397 C T SNORD116-18 5'Flank 0.45 TCGA-D3-A8GV-06 15 25421984 25421984 G A SNORD115-4 RNA 0.44 TCGA-D3-A8GV-06 15 32929213 32929213 A T ARHGAP11A Missense_Mutation p.N747Y 0.55 tolerated(0.24) possibly_damaging(0.885) TCGA-D3-A8GV-06 15 40849599 40849599 G A C15orf57 Intron 0.37 TCGA-D3-A8GV-06 15 42109227 42109227 T C MAPKBP1 Missense_Mutation p.F575L 0.48 deleterious(0) probably_damaging(0.99) TCGA-D3-A8GV-06 15 42151099 42151099 C T SPTBN5 Missense_Mutation p.D2690N 0.27 probably_damaging(0.933) TCGA-D3-A8GV-06 15 42438012 42438012 C T PLA2G4F Missense_Mutation p.G542R 0.35 tolerated(0.05) possibly_damaging(0.905) TCGA-D3-A8GV-06 15 43748982 43748982 A G TP53BP1 Silent p.G608G 0.40 TCGA-D3-A8GV-06 15 43875663 43875663 G A PPIP5K1 Silent p.I94I 0.56 TCGA-D3-A8GV-06 15 48623663 48623663 G A DUT 5'UTR 0.50 TCGA-D3-A8GV-06 15 52017024 52017024 A G LYSMD2 Missense_Mutation p.S190P 0.41 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 15 54614145 54614145 C T UNC13C Missense_Mutation p.S1426L 0.33 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-D3-A8GV-06 15 63097956 63097956 C T TLN2 Missense_Mutation p.A2212V 0.30 deleterious(0.05) benign(0.093) TCGA-D3-A8GV-06 15 66793349 66793349 G A RPL4 Silent p.F257F 0.42 TCGA-D3-A8GV-06 15 74005299 74005299 C T CD276 3'UTR 0.32 TCGA-D3-A8GV-06 15 75982554 75982554 G A CSPG4 Silent p.P284P 0.66 TCGA-D3-A8GV-06 15 82422821 82422821 G A EFTUD1 Nonsense_Mutation p.Q1086* 0.51 TCGA-D3-A8GV-06 15 86122402 86122402 C T AKAP13 Missense_Mutation p.S368F 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-D3-A8GV-06 16 1265056 1265056 G A CACNA1H Missense_Mutation p.G1672R 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 16 15809042 15809042 C T MYH11 Missense_Mutation p.M1871I 0.53 benign(0.016) TCGA-D3-A8GV-06 16 16259708 16259708 C T ABCC6 Nonsense_Mutation p.W1026* 0.45 TCGA-D3-A8GV-06 16 18879895 18879895 T C SMG1 Missense_Mutation p.M994V 0.50 deleterious(0.01) possibly_damaging(0.824) TCGA-D3-A8GV-06 16 2150257 2150257 C T PKD1 Missense_Mutation p.A3208T 0.06 benign(0.055) TCGA-D3-A8GV-06 16 2347786 2347786 G A ABCA3 Missense_Mutation p.A678V 0.45 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 16 2811944 2811944 C T SRRM2 Missense_Mutation p.S472L 0.49 unknown(0) TCGA-D3-A8GV-06 16 28994525 28994525 C T SPNS1 Missense_Mutation p.P412S 0.33 deleterious(0.02) possibly_damaging(0.571) TCGA-D3-A8GV-06 16 30034976 30034976 G A C16orf92 Missense_Mutation p.S20N 0.35 deleterious_low_confidence(0.04) benign(0.383) TCGA-D3-A8GV-06 16 30663119 30663119 C T PRR14 Missense_Mutation p.P9L 0.46 deleterious_low_confidence(0) possibly_damaging(0.489) TCGA-D3-A8GV-06 16 3486734 3486734 G A ZNF597 Missense_Mutation p.S322F 0.55 deleterious(0.04) benign(0.01) TCGA-D3-A8GV-06 16 521323 521323 C T RAB11FIP3 Silent p.V279V 0.38 TCGA-D3-A8GV-06 16 67236794 67236794 G T ELMO3 Splice_Site p.X574_splice 0.44 TCGA-D3-A8GV-06 16 67289013 67289013 G A SLC9A5 Missense_Mutation p.E194K 0.46 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GV-06 16 70896034 70896034 G A HYDIN Silent p.I3898I 0.56 TCGA-D3-A8GV-06 16 71103400 71103400 G A HYDIN Missense_Mutation p.P582S 0.41 probably_damaging(0.986) TCGA-D3-A8GV-06 16 71319166 71319166 G A CMTR2 Nonsense_Mutation p.Q220* 0.35 TCGA-D3-A8GV-06 16 71601964 71601964 G A TAT 3'UTR 0.39 TCGA-D3-A8GV-06 16 84900505 84900505 G A CRISPLD2 Missense_Mutation p.E238K 0.75 tolerated(0.31) benign(0.006) TCGA-D3-A8GV-06 16 9862915 9862915 G A GRIN2A Silent p.L796L 0.47 TCGA-D3-A8GV-06 17 10219343 10219343 C T MYH13 Splice_Site p.X1247_splice 0.37 TCGA-D3-A8GV-06 17 10358352 10358352 G A MYH4 Nonsense_Mutation p.R781* 0.49 TCGA-D3-A8GV-06 17 10405158 10405158 C T MYH1 Missense_Mutation p.G1061E 0.50 deleterious(0) probably_damaging(0.982) TCGA-D3-A8GV-06 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.50 tolerated(0.12) benign(0.252) TCGA-D3-A8GV-06 17 11520883 11520883 T A DNAH9 Missense_Mutation p.S354T 0.25 benign(0.003) TCGA-D3-A8GV-06 17 1840389 1840389 G A RTN4RL1 Missense_Mutation p.P243S 0.55 tolerated(0.17) benign(0.038) TCGA-D3-A8GV-06 17 19578948 19578948 G T ALDH3A2 3'UTR 0.45 TCGA-D3-A8GV-06 17 19645922 19645922 G A ALDH3A1 Missense_Mutation p.P139L 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 17 2995670 2995670 G A OR1D2 Silent p.F207F 0.44 TCGA-D3-A8GV-06 17 31323985 31323985 G A SPACA3 Silent p.P156P 0.40 TCGA-D3-A8GV-06 17 34328508 34328508 G A CCL15 Silent p.L8L 0.33 TCGA-D3-A8GV-06 17 38574081 38574081 G T TOP2A 5'UTR 0.38 TCGA-D3-A8GV-06 17 39637038 39637038 C T KRT35 Silent p.L104L 0.39 TCGA-D3-A8GV-06 17 41102590 41102590 G A AARSD1 3'UTR 0.45 TCGA-D3-A8GV-06 17 41836061 41836061 C T SOST Missense_Mutation p.A17T 0.33 tolerated(0.32) benign(0.393) TCGA-D3-A8GV-06 17 43220948 43220948 G A ACBD4 Nonsense_Mutation p.W322* 0.47 TCGA-D3-A8GV-06 17 45384951 45384951 G A ITGB3 Missense_Mutation p.R750Q 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-D3-A8GV-06 17 4794879 4794879 C T MINK1 Silent p.I623I 0.28 TCGA-D3-A8GV-06 17 48606075 48606075 C T MYCBPAP Silent p.I852I 0.38 TCGA-D3-A8GV-06 17 56350170 56350170 C T MPO Missense_Mutation p.M577I 0.45 tolerated(0.09) benign(0.159) TCGA-D3-A8GV-06 17 62080323 62080323 G A C17orf72 3'Flank 0.48 TCGA-D3-A8GV-06 17 62498170 62498170 C T DDX5 Missense_Mutation p.A392T 0.55 tolerated(0.19) benign(0.392) TCGA-D3-A8GV-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.46 deleterious(0) possibly_damaging(0.817) TCGA-D3-A8GV-06 17 7099640 7099640 G A DLG4 Silent p.F443F 0.56 TCGA-D3-A8GV-06 17 72915620 72915620 C T USH1G Silent p.K437K 0.51 TCGA-D3-A8GV-06 17 74014627 74014627 C A EVPL Missense_Mutation p.A447S 0.31 tolerated(0.37) benign(0) TCGA-D3-A8GV-06 17 78919565 78919565 G A RPTOR Missense_Mutation p.D1042N 0.48 tolerated(0.28) probably_damaging(0.998) TCGA-D3-A8GV-06 18 28713879 28713879 C T DSC1 Missense_Mutation p.M697I 0.61 tolerated(1) benign(0.021) TCGA-D3-A8GV-06 18 28714715 28714715 G A DSC1 Missense_Mutation p.H566Y 0.21 tolerated(1) benign(0.001) TCGA-D3-A8GV-06 18 321716 321716 C T COLEC12 Missense_Mutation p.D719N 0.46 deleterious(0) possibly_damaging(0.66) TCGA-D3-A8GV-06 18 45394829 45394830 - TGAAAAAGT SMAD2 Splice_Site p.X174_splice 0.15 TCGA-D3-A8GV-06 18 45566991 45566993 TCC - ZBTB7C In_Frame_Del p.E162del 0.54 TCGA-D3-A8GV-06 18 47373529 47373529 C T MYO5B Silent p.R1482R 0.61 TCGA-D3-A8GV-06 18 55217844 55217844 G A FECH 3'UTR 0.25 TCGA-D3-A8GV-06 18 59166674 59166674 G T CDH20 Nonsense_Mutation p.G168* 0.62 TCGA-D3-A8GV-06 18 6898665 6898665 T C ARHGAP28 Intron 0.35 TCGA-D3-A8GV-06 19 14574722 14574722 C A PKN1 Silent p.A532A 0.45 TCGA-D3-A8GV-06 19 15349759 15349759 G A BRD4 Missense_Mutation p.A1272V 0.33 benign(0.048) TCGA-D3-A8GV-06 19 17322756 17322756 C T MYO9B 3'UTR 0.60 TCGA-D3-A8GV-06 19 17370531 17370531 G A USHBP1 Missense_Mutation p.S260F 0.43 tolerated(0.18) possibly_damaging(0.663) TCGA-D3-A8GV-06 19 19790253 19790253 C T ZNF101 Missense_Mutation p.S152F 0.42 tolerated(0.59) benign(0.016) TCGA-D3-A8GV-06 19 22574928 22574928 C T ZNF98 Missense_Mutation p.R370K 0.49 tolerated(0.35) benign(0.192) TCGA-D3-A8GV-06 19 31040309 31040309 G A ZNF536 Silent p.P1261P 0.32 TCGA-D3-A8GV-06 19 31769557 31769557 C T TSHZ3 Missense_Mutation p.R381Q 0.51 tolerated(0.26) possibly_damaging(0.795) TCGA-D3-A8GV-06 19 33183234 33183234 C T NUDT19 Missense_Mutation p.A123V 0.71 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 19 35612010 35612010 A T FXYD3 Silent p.L80L 0.47 TCGA-D3-A8GV-06 19 39234839 39234839 C T CAPN12 5'UTR 0.46 TCGA-D3-A8GV-06 19 4207552 4207552 C T ANKRD24 Missense_Mutation p.R198C 0.50 deleterious(0.02) probably_damaging(0.965) TCGA-D3-A8GV-06 19 43697353 43697353 G A PSG4 3'UTR 0.38 TCGA-D3-A8GV-06 19 45996532 45996532 G A RTN2 Nonsense_Mutation p.Q307* 0.44 TCGA-D3-A8GV-06 19 49377688 49377688 G A PPP1R15A Missense_Mutation p.E400K 0.47 deleterious(0.04) benign(0.069) TCGA-D3-A8GV-06 19 49496304 49496304 G A GYS1 Silent p.F22F 0.40 TCGA-D3-A8GV-06 19 50411880 50411880 G T NUP62 Missense_Mutation p.F395L 0.49 deleterious(0) possibly_damaging(0.45) TCGA-D3-A8GV-06 19 51582876 51582876 G C KLK14 Missense_Mutation p.T115R 0.42 tolerated(0.05) benign(0.015) TCGA-D3-A8GV-06 19 52004966 52004966 G A SIGLEC12 Silent p.L8L 0.25 TCGA-D3-A8GV-06 19 52497966 52497966 G A ZNF615 Silent p.F132F 0.45 TCGA-D3-A8GV-06 19 52909157 52909157 C T ZNF528 Intron 0.49 TCGA-D3-A8GV-06 19 53311351 53311351 G A ZNF28 Silent p.F17F 0.41 TCGA-D3-A8GV-06 19 53886312 53886312 G A ZNF525 3'UTR 0.33 TCGA-D3-A8GV-06 19 55086496 55086496 C T LILRA2 Silent p.V217V 0.45 TCGA-D3-A8GV-06 19 55098515 55098515 G A LILRA2 Missense_Mutation p.D432N 0.40 tolerated(0.18) benign(0.023) TCGA-D3-A8GV-06 19 55258793 55258793 C T KIR2DL3 Missense_Mutation p.P224L 0.16 tolerated(0.11) benign(0.064) TCGA-D3-A8GV-06 19 55363699 55363699 G A KIR3DL2 Nonsense_Mutation p.W106* 0.54 TCGA-D3-A8GV-06 19 56423998 56423998 G A NLRP13 Silent p.F395F 0.46 TCGA-D3-A8GV-06 19 57646774 57646774 C T ZIM3 Missense_Mutation p.D311N 0.51 deleterious(0) possibly_damaging(0.69) TCGA-D3-A8GV-06 19 57669753 57669753 C T DUXA Silent p.G127G 0.46 TCGA-D3-A8GV-06 19 57889176 57889176 A G ZNF547 Missense_Mutation p.K278E 0.54 tolerated(0.28) benign(0.199) TCGA-D3-A8GV-06 19 57889177 57889177 A G ZNF547 Missense_Mutation p.K278R 0.55 tolerated(0.47) benign(0.004) TCGA-D3-A8GV-06 19 58946214 58946214 C A ZNF132 Missense_Mutation p.K199N 0.42 tolerated(0.1) benign(0.205) TCGA-D3-A8GV-06 19 6670139 6670139 G A TNFSF14 5'UTR 0.53 TCGA-D3-A8GV-06 19 7626196 7626196 C T PNPLA6 Missense_Mutation p.S1349F 0.50 tolerated(0.18) benign(0.35) TCGA-D3-A8GV-06 19 8563336 8563336 G A PRAM1 Silent p.H452H 0.33 TCGA-D3-A8GV-06 19 8615553 8615553 G A MYO1F Missense_Mutation p.P266L 0.36 tolerated(0.27) benign(0.005) TCGA-D3-A8GV-06 19 8987106 8987106 G A MUC16 Missense_Mutation p.P13962S 0.38 probably_damaging(0.917) TCGA-D3-A8GV-06 19 9013860 9013860 G T MUC16 Missense_Mutation p.L12844I 0.62 possibly_damaging(0.53) TCGA-D3-A8GV-06 19 9013873 9013873 C T MUC16 Silent p.G12839G 0.25 TCGA-D3-A8GV-06 19 9048888 9048888 C T MUC16 Missense_Mutation p.E10915K 0.44 benign(0.016) TCGA-D3-A8GV-06 19 9058027 9058027 G A MUC16 Missense_Mutation p.H9807Y 0.54 unknown(0) TCGA-D3-A8GV-06 19 9061857 9061857 C T MUC16 Missense_Mutation p.G8530E 0.45 unknown(0) TCGA-D3-A8GV-06 19 9064479 9064479 C T MUC16 Missense_Mutation p.G7656E 0.60 unknown(0) TCGA-D3-A8GV-06 19 9071872 9071872 G A MUC16 Silent p.L5192L 0.48 TCGA-D3-A8GV-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.42 unknown(0) TCGA-D3-A8GV-06 19 9091478 9091478 G A MUC16 Missense_Mutation p.P113S 0.47 unknown(0) TCGA-D3-A8GV-06 19 9801254 9801254 C T ZNF812 Missense_Mutation p.E309K 0.43 tolerated(0.05) probably_damaging(0.997) TCGA-D3-A8GV-06 1 10689629 10689629 C T PEX14 Missense_Mutation p.S240F 0.33 deleterious(0) probably_damaging(0.926) TCGA-D3-A8GV-06 1 111441834 111441834 G A CD53 3'UTR 0.41 TCGA-D3-A8GV-06 1 112524393 112524393 G A KCND3 Missense_Mutation p.S319F 0.36 deleterious(0) possibly_damaging(0.788) TCGA-D3-A8GV-06 1 112999926 112999926 C T CTTNBP2NL Silent p.S604S 0.52 TCGA-D3-A8GV-06 1 115220556 115220556 C T AMPD1 Missense_Mutation p.G433E 0.37 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 1 115487554 115487554 G A SYCP1 Missense_Mutation p.R702Q 0.54 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GV-06 1 116936271 116936271 C T ATP1A1 Missense_Mutation p.P529L 0.47 tolerated(0.06) benign(0.018) TCGA-D3-A8GV-06 1 1246317 1246317 C T PUSL1 Missense_Mutation p.A243V 0.44 deleterious(0) probably_damaging(0.995) TCGA-D3-A8GV-06 1 12908217 12908217 C T HNRNPCL1 5'UTR 0.32 TCGA-D3-A8GV-06 1 151171537 151171537 C T PIP5K1A Missense_Mutation p.P22L 0.46 deleterious_low_confidence(0.03) benign(0.149) TCGA-D3-A8GV-06 1 151742727 151742727 G A OAZ3 Missense_Mutation p.D142N 0.42 deleterious(0) probably_damaging(0.941) TCGA-D3-A8GV-06 1 152284480 152284480 C T FLG Missense_Mutation p.R961K 0.42 probably_damaging(0.968) TCGA-D3-A8GV-06 1 153084858 153084858 G A SPRR2F 3'UTR 0.50 TCGA-D3-A8GV-06 1 153346191 153346191 C T S100A12 3'UTR 0.58 TCGA-D3-A8GV-06 1 154437964 154437964 C T IL6R 3'UTR 0.36 TCGA-D3-A8GV-06 1 154437965 154437965 C T IL6R 3'UTR 0.36 TCGA-D3-A8GV-06 1 154461751 154461751 C T SHE Missense_Mutation p.G267D 0.48 deleterious(0.02) benign(0.193) TCGA-D3-A8GV-06 1 155186705 155186705 G A MTX1 3'Flank 0.43 TCGA-D3-A8GV-06 1 155449827 155449827 G A ASH1L Missense_Mutation p.P945L 0.44 deleterious_low_confidence(0.03) benign(0.144) TCGA-D3-A8GV-06 1 155449828 155449828 G A ASH1L Missense_Mutation p.P945S 0.43 tolerated_low_confidence(0.1) benign(0.009) TCGA-D3-A8GV-06 1 156813247 156813247 C T INSRR Silent p.V956V 0.40 TCGA-D3-A8GV-06 1 156837897 156837897 G A NTRK1 Missense_Mutation p.V144I 0.50 tolerated(0.75) benign(0.002) TCGA-D3-A8GV-06 1 158368976 158368976 G A OR10T2 Missense_Mutation p.S94F 0.62 deleterious(0.02) probably_damaging(0.914) TCGA-D3-A8GV-06 1 158436206 158436206 C T OR10K1 Silent p.F285F 0.28 TCGA-D3-A8GV-06 1 158650471 158650471 C T SPTA1 Missense_Mutation p.E194K 0.70 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 1 162313642 162313642 C T NOS1AP Silent p.I157I 0.30 TCGA-D3-A8GV-06 1 167852719 167852719 T A ADCY10 Nonsense_Mutation p.K326* 0.33 TCGA-D3-A8GV-06 1 179041107 179041107 C T FAM20B Missense_Mutation p.A353V 0.29 tolerated(0.61) benign(0.042) TCGA-D3-A8GV-06 1 181620534 181620534 G A CACNA1E Missense_Mutation p.G338R 0.34 deleterious(0) benign(0.037) TCGA-D3-A8GV-06 1 183511262 183511262 C T SMG7 Silent p.I489I 0.31 TCGA-D3-A8GV-06 1 185892765 185892765 C T HMCN1 Missense_Mutation p.S422F 0.60 probably_damaging(0.962) TCGA-D3-A8GV-06 1 19183876 19183876 G A TAS1R2 Silent p.S144S 0.48 TCGA-D3-A8GV-06 1 198608471 198608471 G A PTPRC Missense_Mutation p.G25R 0.66 deleterious_low_confidence(0.03) possibly_damaging(0.812) TCGA-D3-A8GV-06 1 19992292 19992292 G A HTR6 Missense_Mutation p.G16R 0.67 deleterious_low_confidence(0.01) benign(0.34) TCGA-D3-A8GV-06 1 201969126 201969126 G A RNPEP Missense_Mutation p.R396H 0.40 deleterious(0) probably_damaging(0.952) TCGA-D3-A8GV-06 1 205068884 205068884 C T RBBP5 Nonsense_Mutation p.W321* 0.28 TCGA-D3-A8GV-06 1 208218076 208218076 G A PLXNA2 Silent p.G1217G 0.61 TCGA-D3-A8GV-06 1 209933428 209933428 G A TRAF3IP3 Nonsense_Mutation p.W15* 0.44 TCGA-D3-A8GV-06 1 227211042 227211042 G A CDC42BPA Missense_Mutation p.P1478S 0.89 tolerated(0.1) probably_damaging(0.945) TCGA-D3-A8GV-06 1 22965930 22965930 C T C1QA 3'UTR 0.62 TCGA-D3-A8GV-06 1 24390592 24390592 C T MYOM3 Missense_Mutation p.D1198N 0.44 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GV-06 1 248112435 248112435 C T OR2L8 Silent p.S92S 0.89 TCGA-D3-A8GV-06 1 248487718 248487718 C T OR2M7 Silent p.L51L 0.93 TCGA-D3-A8GV-06 1 32741583 32741583 C T LCK Missense_Mutation p.R184C 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GV-06 1 34112306 34112306 G A CSMD2 Silent p.F1532F 0.45 TCGA-D3-A8GV-06 1 35580133 35580133 C T ZMYM1 Missense_Mutation p.S901L 0.47 tolerated(0.07) benign(0.025) TCGA-D3-A8GV-06 1 39950339 39950339 C T MACF1 Missense_Mutation p.L5325F 0.41 probably_damaging(0.976) TCGA-D3-A8GV-06 1 40131779 40131779 C T NT5C1A Missense_Mutation p.E89K 0.40 tolerated(0.39) possibly_damaging(0.605) TCGA-D3-A8GV-06 1 43783040 43783040 G A TIE1 Silent p.K860K 0.42 TCGA-D3-A8GV-06 1 47501478 47501478 G A CYP4X1 Missense_Mutation p.D165N 0.44 tolerated(0.09) benign(0.075) TCGA-D3-A8GV-06 1 47582342 47582342 C T CYP4Z1 Silent p.F429F 0.42 TCGA-D3-A8GV-06 1 50659454 50659454 G A ELAVL4 Silent p.P141P 0.41 TCGA-D3-A8GV-06 1 53608065 53608065 G A SLC1A7 Silent p.L19L 0.38 TCGA-D3-A8GV-06 1 75038788 75038788 C T C1orf173 Missense_Mutation p.G869D 0.38 tolerated(0.23) benign(0.127) TCGA-D3-A8GV-06 1 78338767 78338767 C T FAM73A Missense_Mutation p.P548S 0.40 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 1 87045210 87045210 C T CLCA4 Missense_Mutation p.H766Y 0.50 deleterious(0.01) benign(0.002) TCGA-D3-A8GV-06 1 97658766 97658766 G A DPYD Silent p.I827I 0.56 TCGA-D3-A8GV-06 20 1559294 1559294 G A RP4-576H24.4 Silent p.S40S 0.53 TCGA-D3-A8GV-06 20 18374937 18374937 C T DZANK1 Missense_Mutation p.E557K 0.32 deleterious(0.01) possibly_damaging(0.803) TCGA-D3-A8GV-06 20 33714127 33714127 C T EDEM2 Nonsense_Mutation p.W299* 0.45 TCGA-D3-A8GV-06 20 33842389 33842389 G A MMP24 Missense_Mutation p.E217K 0.38 tolerated(0.09) benign(0.412) TCGA-D3-A8GV-06 20 55213123 55213123 C T TFAP2C 3'UTR 0.64 TCGA-D3-A8GV-06 20 57428570 57428570 G A GNAS Missense_Mutation p.A84T 0.09 tolerated_low_confidence(0.2) unknown(0) TCGA-D3-A8GV-06 20 60937523 60937523 C T LAMA5 Nonsense_Mutation p.W128* 0.48 TCGA-D3-A8GV-06 21 37785185 37785185 C T CHAF1B Silent p.S355S 0.48 TCGA-D3-A8GV-06 21 38309198 38309198 G A HLCS Missense_Mutation p.R183W 0.41 deleterious(0) possibly_damaging(0.487) TCGA-D3-A8GV-06 21 40778279 40778279 C T LCA5L Silent p.T514T 0.40 TCGA-D3-A8GV-06 21 41711193 41711193 G A DSCAM Missense_Mutation p.R454C 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-D3-A8GV-06 21 42866377 42866377 G A TMPRSS2 Silent p.P85P 0.42 TCGA-D3-A8GV-06 21 45518312 45518312 C T TRAPPC10 Silent p.S1081S 0.50 TCGA-D3-A8GV-06 21 45651239 45651239 G A ICOSLG Silent p.V262V 0.52 TCGA-D3-A8GV-06 21 47697563 47697563 G A MCM3AP Missense_Mutation p.S579F 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-D3-A8GV-06 22 26995495 26995495 C T CRYBB1 Missense_Mutation p.E240K 0.37 tolerated(0.35) benign(0.003) TCGA-D3-A8GV-06 22 31536040 31536040 C T PLA2G3 Missense_Mutation p.G101R 0.47 tolerated(0.13) benign(0.399) TCGA-D3-A8GV-06 22 31662073 31662073 C T LIMK2 Silent p.I311I 0.42 TCGA-D3-A8GV-06 22 32788260 32788260 G A RTCB Silent p.I459I 0.52 TCGA-D3-A8GV-06 22 38884305 38884305 T C DDX17 Intron 0.27 TCGA-D3-A8GV-06 22 41911847 41911849 TCC - ACO2 In_Frame_Del p.L255del 0.28 TCGA-D3-A8GV-06 2 100185364 100185364 C T AFF3 Missense_Mutation p.D1003N 0.43 deleterious(0) possibly_damaging(0.592) TCGA-D3-A8GV-06 2 107423361 107423361 C T ST6GAL2 Missense_Mutation p.E455K 0.45 probably_damaging(1) TCGA-D3-A8GV-06 2 107459944 107459944 G A ST6GAL2 Missense_Mutation p.P164S 0.50 benign(0.007) TCGA-D3-A8GV-06 2 108488865 108488865 G A RGPD4 Missense_Mutation p.E1469K 0.13 tolerated(0.22) possibly_damaging(0.766) TCGA-D3-A8GV-06 2 110343400 110343400 G A SEPT10 Missense_Mutation p.R39C 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-D3-A8GV-06 2 111551670 111551670 G A ACOXL Silent p.G88G 0.53 TCGA-D3-A8GV-06 2 113832785 113832785 C T IL1F10 Silent p.F101F 0.47 TCGA-D3-A8GV-06 2 141597608 141597608 C T LRP1B Missense_Mutation p.D1721N 0.27 possibly_damaging(0.539) TCGA-D3-A8GV-06 2 141598524 141598524 C T LRP1B Missense_Mutation p.D1693N 0.40 possibly_damaging(0.555) TCGA-D3-A8GV-06 2 148710056 148710056 T C ORC4 Silent p.L158L 0.50 TCGA-D3-A8GV-06 2 149861906 149861906 G A KIF5C Splice_Site p.X792_splice 0.50 TCGA-D3-A8GV-06 2 1507833 1507833 G A TPO Missense_Mutation p.D834N 0.56 deleterious(0.01) probably_damaging(1) TCGA-D3-A8GV-06 2 160958283 160958283 C T ITGB6 Silent p.R777R 0.44 TCGA-D3-A8GV-06 2 166245543 166245543 A G SCN2A Missense_Mutation p.K1743E 0.43 tolerated(0.07) benign(0.031) TCGA-D3-A8GV-06 2 169850240 169850240 C T ABCB11 Missense_Mutation p.G255E 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-D3-A8GV-06 2 169850296 169850296 G A ABCB11 Silent p.F236F 0.50 TCGA-D3-A8GV-06 2 172945128 172945128 G A METAP1D Silent p.E334E 0.42 TCGA-D3-A8GV-06 2 179641523 179641523 C T TTN Missense_Mutation p.E1690K 0.50 TCGA-D3-A8GV-06 2 183387031 183387031 C T PDE1A Missense_Mutation p.E25K 0.44 tolerated_low_confidence(0.61) benign(0.005) TCGA-D3-A8GV-06 2 18766227 18766227 C T NT5C1B Silent p.T152T 0.32 TCGA-D3-A8GV-06 2 189449059 189449059 C T GULP1 Missense_Mutation p.S226L 0.38 tolerated(0.09) benign(0.146) TCGA-D3-A8GV-06 2 196581575 196581575 G A SLC39A10 Silent p.R637R 0.44 TCGA-D3-A8GV-06 2 197084780 197084780 T C HECW2 Missense_Mutation p.N1464S 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-D3-A8GV-06 2 202074280 202074280 C T CASP10 Silent p.V470V 0.52 TCGA-D3-A8GV-06 2 209045986 209045986 C T C2orf80 Missense_Mutation p.E84K 0.43 deleterious(0.05) benign(0.125) TCGA-D3-A8GV-06 2 21230108 21230108 T C APOB Missense_Mutation p.N3211S 0.48 benign(0.001) TCGA-D3-A8GV-06 2 213872806 213872806 C T IKZF2 Missense_Mutation p.E287K 0.47 tolerated(0.08) possibly_damaging(0.867) TCGA-D3-A8GV-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.46 deleterious(0) probably_damaging(0.954) TCGA-D3-A8GV-06 2 219564005 219564005 G A STK36 Silent p.Q1246Q 0.44 TCGA-D3-A8GV-06 2 220342430 220342430 C T SPEG Silent p.V1583V 0.45 TCGA-D3-A8GV-06 2 223918046 223918046 C T KCNE4 Silent p.I166I 0.44 TCGA-D3-A8GV-06 2 228115865 228115865 G A COL4A3 Missense_Mutation p.G186S 0.46 probably_damaging(1) TCGA-D3-A8GV-06 2 228115866 228115866 G A COL4A3 Missense_Mutation p.G186D 0.45 probably_damaging(1) TCGA-D3-A8GV-06 2 228769652 228769652 C T DAW1 Missense_Mutation p.S219F 0.35 deleterious(0.05) benign(0.072) TCGA-D3-A8GV-06 2 228882955 228882955 G A SPHKAP Missense_Mutation p.S872F 0.46 tolerated(0.72) benign(0.019) TCGA-D3-A8GV-06 2 228883847 228883847 C T SPHKAP Missense_Mutation p.E575K 0.47 deleterious(0.03) probably_damaging(0.945) TCGA-D3-A8GV-06 2 238742747 238742747 C T RBM44 Silent p.I999I 0.38 TCGA-D3-A8GV-06 2 242148993 242148993 C T ANO7 Silent p.F488F 0.14 TCGA-D3-A8GV-06 2 27601062 27601062 C T ZNF513 Missense_Mutation p.G326S 0.40 tolerated(0.54) possibly_damaging(0.855) TCGA-D3-A8GV-06 2 39009082 39009082 C T GEMIN6 3'UTR 0.38 TCGA-D3-A8GV-06 2 40655948 40655948 G A SLC8A1 Silent p.F491F 0.47 TCGA-D3-A8GV-06 2 48028179 48028179 A T MSH6 Silent p.I1019I 0.34 TCGA-D3-A8GV-06 2 61726893 61726893 G A XPO1 Missense_Mutation p.S182F 0.45 deleterious(0) probably_damaging(0.994) TCGA-D3-A8GV-06 2 63609218 63609218 G A WDPCP Nonsense_Mutation p.R483* 0.50 TCGA-D3-A8GV-06 2 73118700 73118700 C T SPR 3'UTR 0.56 TCGA-D3-A8GV-06 2 86364119 86364119 A G PTCD3 Missense_Mutation p.N612S 0.46 tolerated(0.11) benign(0.015) TCGA-D3-A8GV-06 3 100621520 100621520 C T ABI3BP Silent p.P97P 0.62 TCGA-D3-A8GV-06 3 113380240 113380240 C T KIAA2018 Missense_Mutation p.E97K 0.49 benign(0.285) TCGA-D3-A8GV-06 3 113503100 113503100 C T ATP6V1A Missense_Mutation p.R81C 0.43 deleterious(0.03) benign(0.12) TCGA-D3-A8GV-06 3 113595016 113595016 C T GRAMD1C Missense_Mutation p.S123F 0.34 deleterious(0) possibly_damaging(0.863) TCGA-D3-A8GV-06 3 119886757 119886757 G A GPR156 Nonsense_Mutation p.Q523* 0.40 TCGA-D3-A8GV-06 3 119886758 119886758 G C GPR156 Silent p.P522P 0.40 TCGA-D3-A8GV-06 3 122353973 122353973 G A PARP15 Missense_Mutation p.G560E 0.50 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 3 127292509 127292509 G A TPRA1 Missense_Mutation p.A326V 0.53 tolerated(0.53) benign(0.001) TCGA-D3-A8GV-06 3 140123527 140123527 G A CLSTN2 Missense_Mutation p.E186K 0.54 tolerated(1) benign(0.043) TCGA-D3-A8GV-06 3 148583291 148583291 G A CPA3 Missense_Mutation p.E34K 0.55 deleterious(0.03) possibly_damaging(0.708) TCGA-D3-A8GV-06 3 154890388 154890388 C T MME Missense_Mutation p.P714S 0.49 deleterious(0) probably_damaging(0.978) TCGA-D3-A8GV-06 3 161147358 161147358 G A RP11-3P17.5 RNA 0.40 TCGA-D3-A8GV-06 3 164906992 164906992 G A SLITRK3 Missense_Mutation p.P543S 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-D3-A8GV-06 3 17131296 17131296 T C PLCL2 Silent p.A966A 0.42 TCGA-D3-A8GV-06 3 176750757 176750757 A G TBL1XR1 Splice_Site p.X472_splice 0.30 TCGA-D3-A8GV-06 3 191861731 191861731 G A FGF12 3'UTR 0.51 TCGA-D3-A8GV-06 3 196674516 196674516 G A PIGZ Missense_Mutation p.L418F 0.60 tolerated(0.06) benign(0.17) TCGA-D3-A8GV-06 3 32995094 32995094 G A CCR4 Silent p.V60V 0.39 TCGA-D3-A8GV-06 3 38601890 38601890 G A SCN5A Silent p.I1331I 0.42 TCGA-D3-A8GV-06 3 38941514 38941514 G A SCN11A Silent p.L631L 0.47 TCGA-D3-A8GV-06 3 41266134 41266136 CTT - CTNNB1 In_Frame_Del p.S45del 0.43 TCGA-D3-A8GV-06 3 42226210 42226210 G A TRAK1 Missense_Mutation p.G133S 0.45 deleterious(0) possibly_damaging(0.713) TCGA-D3-A8GV-06 3 51127782 51127782 C T DOCK3 Missense_Mutation p.S238F 0.42 tolerated(0.37) benign(0.005) TCGA-D3-A8GV-06 3 51411938 51411938 G A DOCK3 Missense_Mutation p.E1778K 0.38 deleterious_low_confidence(0) possibly_damaging(0.524) TCGA-D3-A8GV-06 3 51750049 51750049 G A GRM2 Missense_Mutation p.E754K 0.36 deleterious(0.03) benign(0.376) TCGA-D3-A8GV-06 3 54959118 54959118 G A LRTM1 Silent p.I44I 0.36 TCGA-D3-A8GV-06 3 57494885 57494885 G A DNAH12 Missense_Mutation p.P175L 0.41 deleterious(0) possibly_damaging(0.662) TCGA-D3-A8GV-06 3 64641329 64641329 T C ADAMTS9 Silent p.L364L 0.42 TCGA-D3-A8GV-06 3 71591217 71591217 T A MIR1284 RNA 0.50 TCGA-D3-A8GV-06 3 93761890 93761890 A T ARL13B Missense_Mutation p.N277I 0.29 deleterious(0.03) benign(0) TCGA-D3-A8GV-06 3 97887776 97887776 C T OR5H15 Missense_Mutation p.T78I 0.29 deleterious(0.03) benign(0.039) TCGA-D3-A8GV-06 4 101344490 101344490 C T EMCN Missense_Mutation p.E163K 0.44 tolerated(0.54) probably_damaging(0.973) TCGA-D3-A8GV-06 4 107845204 107845204 C T DKK2 Silent p.Q229Q 0.42 TCGA-D3-A8GV-06 4 114823685 114823685 G A ARSJ Silent p.I515I 0.49 TCGA-D3-A8GV-06 4 122071319 122071319 T C TNIP3 Missense_Mutation p.K260R 0.33 tolerated(0.11) possibly_damaging(0.558) TCGA-D3-A8GV-06 4 122739209 122739209 T C CCNA2 Missense_Mutation p.K414E 0.34 deleterious(0) possibly_damaging(0.896) TCGA-D3-A8GV-06 4 141789318 141789318 G A RNF150 3'UTR 0.45 TCGA-D3-A8GV-06 4 142642234 142642234 G A IL15 Intron 0.43 TCGA-D3-A8GV-06 4 145035893 145035893 G A GYPA Missense_Mutation p.P129S 0.41 tolerated(0.56) benign(0.273) TCGA-D3-A8GV-06 4 175897641 175897641 C T ADAM29 Missense_Mutation p.T322I 0.42 deleterious(0.04) possibly_damaging(0.629) TCGA-D3-A8GV-06 4 176573017 176573017 C A GPM6A Missense_Mutation p.G170V 0.39 tolerated(0.29) possibly_damaging(0.815) TCGA-D3-A8GV-06 4 187205274 187205274 C T F11 Silent p.I388I 0.42 TCGA-D3-A8GV-06 4 189065236 189065236 C T TRIML1 Silent p.L269L 0.50 TCGA-D3-A8GV-06 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.40 deleterious(0) possibly_damaging(0.756) TCGA-D3-A8GV-06 4 24538713 24538713 G A DHX15 Missense_Mutation p.H624Y 0.51 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.54 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 4 39482825 39482825 C T LIAS 3'Flank 0.22 TCGA-D3-A8GV-06 4 3949722 3949722 C T FAM86EP RNA 0.38 TCGA-D3-A8GV-06 4 40122779 40122779 G A N4BP2 Silent p.Q1016Q 0.40 TCGA-D3-A8GV-06 4 41496607 41496607 G A LIMCH1 Missense_Mutation p.G51R 0.35 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 4 47582431 47582431 C T ATP10D Missense_Mutation p.T1195I 0.41 deleterious(0.03) benign(0.175) TCGA-D3-A8GV-06 4 69696437 69696437 G A UGT2B10 Missense_Mutation p.R476Q 0.48 deleterious(0.01) probably_damaging(0.979) TCGA-D3-A8GV-06 4 69798396 69798396 C T UGT2A3 Missense_Mutation p.E316K 0.38 tolerated(0.13) benign(0.36) TCGA-D3-A8GV-06 4 71347534 71347534 G A MUC7 Missense_Mutation p.R358Q 0.40 tolerated_low_confidence(0.47) unknown(0) TCGA-D3-A8GV-06 4 74283998 74283998 C T ALB Missense_Mutation p.S541F 0.31 deleterious(0) possibly_damaging(0.461) TCGA-D3-A8GV-06 4 75673305 75673305 C T BTC Silent p.L161L 0.43 TCGA-D3-A8GV-06 4 76943022 76943022 G A CXCL10 3'UTR 0.50 TCGA-D3-A8GV-06 4 85540647 85540647 C T CDS1 Missense_Mutation p.R181C 0.49 deleterious(0.01) benign(0.094) TCGA-D3-A8GV-06 5 100222229 100222229 G A ST8SIA4 Silent p.V107V 0.37 TCGA-D3-A8GV-06 5 112175738 112175738 C T APC Missense_Mutation p.P1483S 0.41 benign(0.41) TCGA-D3-A8GV-06 5 121786676 121786676 G A SNCAIP Missense_Mutation p.D712N 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.69) TCGA-D3-A8GV-06 5 127474291 127474291 G A SLC12A2 Missense_Mutation p.E471K 0.44 tolerated(0.17) benign(0.314) TCGA-D3-A8GV-06 5 135397317 135397317 C T TGFBI Intron 0.35 TCGA-D3-A8GV-06 5 13721324 13721324 C T DNAH5 Missense_Mutation p.E4022K 0.82 possibly_damaging(0.621) TCGA-D3-A8GV-06 5 140168335 140168335 C T PCDHA1 Intron 0.42 TCGA-D3-A8GV-06 5 140229749 140229749 G A PCDHA9 Missense_Mutation p.D557N 0.39 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-D3-A8GV-06 5 140307396 140307396 G A PCDHAC1 Missense_Mutation p.E307K 0.49 deleterious(0) probably_damaging(0.958) TCGA-D3-A8GV-06 5 140432366 140432366 G A PCDHB1 Missense_Mutation p.M437I 0.41 tolerated(0.25) benign(0.001) TCGA-D3-A8GV-06 5 140589046 140589046 G A PCDHB12 Silent p.R189R 0.29 TCGA-D3-A8GV-06 5 140590671 140590671 C T PCDHB12 Missense_Mutation p.P731L 0.43 tolerated_low_confidence(0.24) benign(0.009) TCGA-D3-A8GV-06 5 140616180 140616180 C T PCDHB18 RNA 0.43 TCGA-D3-A8GV-06 5 140741731 140741731 G A PCDHGB2 Missense_Mutation p.D677N 0.47 tolerated(0.18) benign(0.271) TCGA-D3-A8GV-06 5 140769813 140769813 C T PCDHGB4 Missense_Mutation p.P788S 0.39 tolerated(0.2) benign(0.097) TCGA-D3-A8GV-06 5 140869034 140869034 C T PCDHGC5 Missense_Mutation p.S76F 0.33 tolerated(0.06) possibly_damaging(0.694) TCGA-D3-A8GV-06 5 151784076 151784076 C T NMUR2 Missense_Mutation p.G200D 0.36 tolerated(0.84) benign(0.198) TCGA-D3-A8GV-06 5 154173498 154173498 C T LARP1 Missense_Mutation p.S259F 0.50 tolerated(0.33) benign(0.353) TCGA-D3-A8GV-06 5 154396834 154396834 G A KIF4B Missense_Mutation p.E1139K 0.47 tolerated_low_confidence(0.06) possibly_damaging(0.604) TCGA-D3-A8GV-06 5 170648799 170648799 G A RANBP17 Missense_Mutation p.G793R 0.33 deleterious(0.02) benign(0.056) TCGA-D3-A8GV-06 5 176022807 176022807 G A GPRIN1 3'UTR 0.50 TCGA-D3-A8GV-06 5 176304589 176304589 C T UNC5A Missense_Mutation p.P507L 0.30 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 5 180419943 180419943 C T BTNL3 Silent p.F60F 0.49 TCGA-D3-A8GV-06 5 26881162 26881162 C T CDH9 3'UTR 0.46 TCGA-D3-A8GV-06 5 32090332 32090332 G A PDZD2 Missense_Mutation p.E2260K 0.48 tolerated(0.13) probably_damaging(0.998) TCGA-D3-A8GV-06 5 38406951 38406951 A G EGFLAM Missense_Mutation p.K284E 0.54 deleterious_low_confidence(0.01) benign(0.271) TCGA-D3-A8GV-06 5 41142989 41142989 C T C6 Missense_Mutation p.G915R 0.38 deleterious(0) probably_damaging(0.985) TCGA-D3-A8GV-06 5 45262552 45262552 C T HCN1 Missense_Mutation p.R715Q 0.50 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-D3-A8GV-06 5 74134812 74134812 G A FAM169A Missense_Mutation p.P99L 0.37 deleterious(0) benign(0.331) TCGA-D3-A8GV-06 5 78347271 78347271 G A DMGDH Missense_Mutation p.P195L 0.55 deleterious(0) probably_damaging(0.998) TCGA-D3-A8GV-06 5 89925154 89925154 G A GPR98 Missense_Mutation p.G546E 0.44 probably_damaging(0.972) TCGA-D3-A8GV-06 5 89949315 89949315 C T GPR98 Silent p.F1308F 0.32 TCGA-D3-A8GV-06 5 90101193 90101193 C T GPR98 Silent p.L4918L 0.38 TCGA-D3-A8GV-06 5 95234001 95234001 G A ELL2 Missense_Mutation p.L490F 0.49 tolerated(0.51) benign(0.044) TCGA-D3-A8GV-06 5 95751820 95751820 C T PCSK1 Missense_Mutation p.G209E 0.36 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 6 100403931 100403931 C T MCHR2 Silent p.V31V 0.54 TCGA-D3-A8GV-06 6 105224674 105224674 A T HACE1 Missense_Mutation p.D602E 0.51 deleterious(0.03) possibly_damaging(0.828) TCGA-D3-A8GV-06 6 105224676 105224676 C T HACE1 Missense_Mutation p.D602N 0.51 deleterious(0.03) benign(0.425) TCGA-D3-A8GV-06 6 108489268 108489268 C T NR2E1 Intron 0.55 TCGA-D3-A8GV-06 6 109757308 109757308 C A PPIL6 Missense_Mutation p.R77M 0.42 deleterious(0.02) probably_damaging(0.95) TCGA-D3-A8GV-06 6 136475305 136475305 G A PDE7B Missense_Mutation p.E191K 0.53 deleterious(0) probably_damaging(0.955) TCGA-D3-A8GV-06 6 136972163 136972163 C T MAP3K5 Missense_Mutation p.E583K 0.42 tolerated(0.11) benign(0.05) TCGA-D3-A8GV-06 6 142399724 142399724 G A NMBR Missense_Mutation p.P247S 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-D3-A8GV-06 6 150464460 150464460 G A PPP1R14C Silent p.R44R 0.65 TCGA-D3-A8GV-06 6 152665270 152665270 C T SYNE1 Silent p.P4057P 0.37 TCGA-D3-A8GV-06 6 159184395 159184395 A C SYTL3 Missense_Mutation p.Q526P 0.46 tolerated(0.14) probably_damaging(0.985) TCGA-D3-A8GV-06 6 170592748 170592748 C T DLL1 Missense_Mutation p.G540D 0.50 tolerated(0.47) benign(0.001) TCGA-D3-A8GV-06 6 22294638 22294638 G A PRL Silent p.F68F 0.43 TCGA-D3-A8GV-06 6 25701626 25701626 C T SCGN 3'UTR 0.41 TCGA-D3-A8GV-06 6 28540028 28540028 G A SCAND3 Missense_Mutation p.S1213L 0.46 tolerated_low_confidence(0.1) benign(0.075) TCGA-D3-A8GV-06 6 28543869 28543869 C T SCAND3 Missense_Mutation p.D205N 0.34 tolerated_low_confidence(0.09) benign(0.001) TCGA-D3-A8GV-06 6 29055068 29055068 G A OR2B3 5'UTR 0.36 TCGA-D3-A8GV-06 6 29323609 29323609 G A OR5V1 Missense_Mutation p.R122C 0.33 deleterious(0) probably_damaging(0.961) TCGA-D3-A8GV-06 6 33135601 33135601 C T COL11A2 Missense_Mutation p.G1244E 0.35 unknown(0) TCGA-D3-A8GV-06 6 33260958 33260958 G C RGL2 Missense_Mutation p.H614Q 0.37 deleterious(0) probably_damaging(0.917) TCGA-D3-A8GV-06 6 38891028 38891028 C T DNAH8 Intron 0.47 TCGA-D3-A8GV-06 6 42237057 42237057 G A TRERF1 Missense_Mutation p.P91L 0.46 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-D3-A8GV-06 6 42237058 42237058 G A TRERF1 Missense_Mutation p.P91S 0.45 tolerated_low_confidence(0.52) benign(0.257) TCGA-D3-A8GV-06 6 42665974 42665974 C T PRPH2 3'UTR 0.57 TCGA-D3-A8GV-06 6 46834772 46834772 G A GPR116 Missense_Mutation p.P575L 0.32 deleterious(0) probably_damaging(1) TCGA-D3-A8GV-06 6 49754076 49754076 C T PGK2 Silent p.K275K 0.43 TCGA-D3-A8GV-06 6 51618058 51618058 G A PKHD1 Missense_Mutation p.S2964L 0.51 tolerated(0.09) benign(0.009) TCGA-D3-A8GV-06 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.33 deleterious(0) probably_damaging(0.999) TCGA-D3-A8GV-06 6 56883233 56883233 T A BEND6 Missense_Mutation p.L243I 0.48 tolerated(0.24) possibly_damaging(0.657) TCGA-D3-A8GV-06 6 70098769 70098769 C T BAI3 Nonsense_Mutation p.Q1519* 0.50 TCGA-D3-A8GV-06 6 73713655 73713655 G A KCNQ5 Silent p.L141L 0.42 TCGA-D3-A8GV-06 6 8102770 8102770 C T EEF1E1 5'UTR 0.43 TCGA-D3-A8GV-06 6 83921611 83921611 C T ME1 3'UTR 0.38 TCGA-D3-A8GV-06 6 94066685 94066685 C T EPHA7 Silent p.G358G 0.34 TCGA-D3-A8GV-06 6 97247113 97247113 C T GPR63 Silent p.V165V 0.36 TCGA-D3-A8GV-06 7 100678106 100678106 G A MUC17 Missense_Mutation p.E1137K 0.09 unknown(0) TCGA-D3-A8GV-06 7 105192025 105192025 C A RINT1 Missense_Mutation p.Q448K 0.08 deleterious(0.01) benign(0.309) TCGA-D3-A8GV-06 7 116415002 116415002 C T MET Silent p.S1050S 0.85 TCGA-D3-A8GV-06 7 134925468 134925468 G A STRA8 Silent p.K86K 0.91 TCGA-D3-A8GV-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.93 deleterious(0) probably_damaging(0.967) TCGA-D3-A8GV-06 7 141957516 141957516 G A PRSS58 Silent p.I4I 0.04 TCGA-D3-A8GV-06 7 142176568 142176568 C T TRBV7-4 Silent p.R36R 0.95 TCGA-D3-A8GV-06 7 142482369 142482369 C T PRSS3P2 RNA 0.13 TCGA-D3-A8GV-06 7 142749677 142749677 C T OR6V1 Silent p.L80L 0.06 TCGA-D3-A8GV-06 7 143029919 143029919 C T CLCN1 Missense_Mutation p.P452S 0.03 deleterious(0.03) probably_damaging(0.996) TCGA-D3-A8GV-06 7 143826919 143826919 C T OR2A14 Silent p.S238S 0.89 TCGA-D3-A8GV-06 7 148514980 148514980 G A EZH2 Missense_Mutation p.S410L 0.18 tolerated(0.28) benign(0.063) TCGA-D3-A8GV-06 7 31617907 31617907 G A CCDC129 Silent p.P369P 0.70 TCGA-D3-A8GV-06 7 34698089 34698089 C T NPSR1 Missense_Mutation p.S22F 0.65 deleterious(0.01) possibly_damaging(0.667) TCGA-D3-A8GV-06 7 36552914 36552914 C T AOAH Missense_Mutation p.E558K 0.31 deleterious(0.04) probably_damaging(0.973) TCGA-D3-A8GV-06 7 37172836 37172836 G A ELMO1 Missense_Mutation p.H364Y 0.68 tolerated(1) benign(0.167) TCGA-D3-A8GV-06 7 40221594 40221594 C T SUGCT Missense_Mutation p.L72F 0.32 deleterious(0) possibly_damaging(0.781) TCGA-D3-A8GV-06 7 50468012 50468012 A G IKZF1 Missense_Mutation p.N374S 0.22 tolerated(0.23) benign(0.012) TCGA-D3-A8GV-06 7 53103529 53103529 G A POM121L12 Silent p.L55L 0.33 TCGA-D3-A8GV-06 7 53104158 53104158 G T POM121L12 Missense_Mutation p.W265L 0.37 tolerated_low_confidence(1) possibly_damaging(0.803) TCGA-D3-A8GV-06 7 57199993 57199993 C T ZNF479 Missense_Mutation p.M13I 0.77 deleterious_low_confidence(0.01) benign(0.091) TCGA-D3-A8GV-06 7 63538427 63538427 C T ZNF727 Missense_Mutation p.H334Y 0.72 deleterious(0) probably_damaging(0.943) TCGA-D3-A8GV-06 7 63720634 63720634 C T ZNF679 Silent p.F25F 0.83 TCGA-D3-A8GV-06 7 64168402 64168402 C T ZNF107 Missense_Mutation p.H574Y 0.08 deleterious(0.01) benign(0.211) TCGA-D3-A8GV-06 7 6730498 6730498 T G ZNF12 Missense_Mutation p.D692A 0.55 tolerated_low_confidence(0.1) probably_damaging(0.997) TCGA-D3-A8GV-06 7 73280071 73280071 G A WBSCR28 Silent p.T222T 0.09 TCGA-D3-A8GV-06 7 81695834 81695834 G T CACNA2D1 Missense_Mutation p.P222Q 0.88 tolerated(0.06) probably_damaging(1) TCGA-D3-A8GV-06 7 92210836 92210836 G C FAM133B Missense_Mutation p.R36G 0.07 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-D3-A8GV-06 7 95224396 95224396 C T PDK4 Missense_Mutation p.E71K 0.82 deleterious(0.02) probably_damaging(1) TCGA-D3-A8GV-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.88 probably_damaging(0.984) TCGA-D3-A8GV-06 7 99964971 99964971 G A PILRB Splice_Site p.X219_splice 0.08 TCGA-D3-A8GV-06 8 10465872 10465872 T A RP1L1 Missense_Mutation p.E1912D 0.44 unknown(0) TCGA-D3-A8GV-06 8 108334241 108334241 G A ANGPT1 Nonsense_Mutation p.Q231* 0.43 TCGA-D3-A8GV-06 8 110461698 110461698 G A PKHD1L1 Missense_Mutation p.E2053K 0.42 tolerated(0.8) benign(0.002) TCGA-D3-A8GV-06 8 113236883 113236883 G A CSMD3 3'UTR 0.24 TCGA-D3-A8GV-06 8 118832034 118832034 C G EXT1 Splice_Site p.X473_splice 0.05 TCGA-D3-A8GV-06 8 126445835 126445835 T G TRIB1 Missense_Mutation p.F213V 0.43 deleterious(0) probably_damaging(0.913) TCGA-D3-A8GV-06 8 141370201 141370201 G A TRAPPC9 Silent p.V579V 0.34 TCGA-D3-A8GV-06 8 17228688 17228688 G A MTMR7 Silent p.S56S 0.43 TCGA-D3-A8GV-06 8 21955234 21955234 C T FAM160B2 Missense_Mutation p.L137F 0.40 deleterious(0) probably_damaging(0.987) TCGA-D3-A8GV-06 8 25253065 25253065 A C DOCK5 Missense_Mutation p.I1512L 0.51 tolerated(0.2) benign(0.142) TCGA-D3-A8GV-06 8 26627613 26627613 G A ADRA1A Intron 0.42 TCGA-D3-A8GV-06 8 27320835 27320835 G A CHRNA2 Silent p.P375P 0.52 TCGA-D3-A8GV-06 8 2836241 2836241 C T CSMD1 Missense_Mutation p.G2820E 1.00 probably_damaging(0.94) TCGA-D3-A8GV-06 8 38250255 38250255 T G LETM2 Silent p.T34T 0.59 TCGA-D3-A8GV-06 8 52321652 52321652 G A PXDNL Silent p.P844P 0.30 TCGA-D3-A8GV-06 8 53126766 53126766 C T ST18 Missense_Mutation p.E18K 0.54 tolerated(1) benign(0) TCGA-D3-A8GV-06 8 54934644 54934645 - T TCEA1 Frame_Shift_Ins p.M15Dfs*18 0.28 TCGA-D3-A8GV-06 8 67577750 67577750 G A VCPIP1 Missense_Mutation p.P482S 0.49 tolerated(0.29) benign(0.004) TCGA-D3-A8GV-06 8 73849446 73849446 C T KCNB2 Missense_Mutation p.S619L 0.35 tolerated_low_confidence(0.51) benign(0.036) TCGA-D3-A8GV-06 8 87126038 87126038 A T ATP6V0D2 Missense_Mutation p.R77S 0.46 deleterious(0.01) benign(0.005) TCGA-D3-A8GV-06 8 95140463 95140463 C T CDH17 3'UTR 0.45 TCGA-D3-A8GV-06 8 95511637 95511637 C T KIAA1429 Missense_Mutation p.E1399K 0.65 deleterious(0.01) benign(0.054) TCGA-D3-A8GV-06 9 102626210 102626210 G A NR4A3 3'UTR 0.97 TCGA-D3-A8GV-06 9 116079188 116079188 G A WDR31 Silent p.A315A 0.83 TCGA-D3-A8GV-06 9 116856252 116856252 C T KIF12 Silent p.R300R 1.00 TCGA-D3-A8GV-06 9 118997777 118997777 G A PAPPA Missense_Mutation p.D865N 0.97 deleterious(0) possibly_damaging(0.555) TCGA-D3-A8GV-06 9 122000974 122000974 G A BRINP1 Missense_Mutation p.S215F 0.91 deleterious(0) probably_damaging(0.927) TCGA-D3-A8GV-06 9 123812510 123812510 T A C5 Silent p.G5G 0.89 TCGA-D3-A8GV-06 9 125329971 125329971 C T OR1L8 Silent p.Q262Q 0.91 TCGA-D3-A8GV-06 9 129975306 129975306 C T RALGPS1 Silent p.F510F 0.88 TCGA-D3-A8GV-06 9 136595279 136595279 G A SARDH Missense_Mutation p.R241C 0.94 tolerated(0.05) benign(0.013) TCGA-D3-A8GV-06 9 139391319 139391319 C T NOTCH1 Missense_Mutation p.G2291E 0.85 tolerated(0.22) benign(0.05) TCGA-D3-A8GV-06 9 18928248 18928248 G A FAM154A Silent p.T409T 0.82 TCGA-D3-A8GV-06 9 33463431 33463431 G A NOL6 Silent p.F1001F 1.00 TCGA-D3-A8GV-06 9 70917842 70917842 C T FOXD4L3 5'UTR 0.28 TCGA-D3-A8GV-06 9 72349158 72349158 G A PTAR1 Silent p.I112I 0.93 TCGA-D3-A8GV-06 9 84531336 84531336 C T SPATA31D5P RNA 0.78 TCGA-D3-A8GV-06 9 91661778 91661779 - G SHC3 Frame_Shift_Ins p.H365Pfs*4 0.34 TCGA-D3-A8GV-06 9 93375570 93375570 C T DIRAS2 Silent p.G180G 0.88 TCGA-D3-A8GV-06 X 100403106 100403106 C T CENPI Missense_Mutation p.H684Y 0.95 tolerated(0.57) benign(0.002) TCGA-D3-A8GV-06 X 114141850 114141850 C T HTR2C Missense_Mutation p.R417W 0.90 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-D3-A8GV-06 X 134494645 134494645 C T ZNF449 Missense_Mutation p.H401Y 0.87 tolerated(0.11) benign(0.174) TCGA-D3-A8GV-06 X 140994653 140994653 C T MAGEC1 Missense_Mutation p.S488F 0.94 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-D3-A8GV-06 X 151092952 151092952 C T MAGEA4 Silent p.F272F 0.91 TCGA-D3-A8GV-06 X 153880597 153880597 C T CTAG2 Missense_Mutation p.G193E 0.96 tolerated_low_confidence(0.39) unknown(0) TCGA-D3-A8GV-06 X 34961184 34961184 C T FAM47B Missense_Mutation p.P79L 0.92 tolerated(0.08) benign(0.084) TCGA-D3-A8GV-06 X 37285090 37285090 T C PRRG1 Intron 1.00 TCGA-D3-A8GV-06 X 46713054 46713054 C T RP2 Silent p.T82T 0.93 TCGA-D3-A8GV-06 X 48457753 48457753 G A WDR13 Missense_Mutation p.D99N 1.00 tolerated(0.57) benign(0.003) TCGA-D3-A8GV-06 X 52825601 52825601 G A SPANXN5 Missense_Mutation p.S49L 0.93 tolerated(0.51) benign(0.001) TCGA-D3-A8GV-06 X 55514211 55514211 T C USP51 Missense_Mutation p.K388E 0.95 deleterious(0) probably_damaging(0.973) TCGA-D3-A8GV-06 X 73062312 73062312 G A XIST RNA 0.80 TCGA-D3-A8GV-06 X 76875872 76875872 G A ATRX Silent p.L1755L 0.90 TCGA-D3-A8GV-06 X 83411199 83411199 C T RPS6KA6 Missense_Mutation p.D48N 0.81 tolerated(0.09) benign(0.008) TCGA-D3-A8GV-06 Y 22741500 22741500 G A EIF1AY Missense_Mutation p.G8E 0.60 tolerated(0.06) unknown(0) TCGA-D9-A148-06 10 102789856 102789856 G C PDZD7 Missense_Mutation p.R41G 0.20 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-D9-A148-06 10 106918692 106918692 C T SORCS3 Missense_Mutation p.P558S 0.20 deleterious(0) probably_damaging(0.98) TCGA-D9-A148-06 10 107012560 107012560 C T SORCS3 Missense_Mutation p.L1045F 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-D9-A148-06 10 124273856 124273856 C T HTRA1 Missense_Mutation p.P475L 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 10 124395627 124395627 C T DMBT1 Silent p.F2094F 0.49 TCGA-D9-A148-06 10 124598677 124598677 G A CUZD1 Silent p.L102L 0.24 TCGA-D9-A148-06 10 28101489 28101489 G A ARMC4 Silent p.S1029S 0.14 TCGA-D9-A148-06 10 38345158 38345158 C T ZNF33A Silent p.F702F 0.57 TCGA-D9-A148-06 10 50959932 50959932 C T OGDHL Silent p.V230V 0.46 TCGA-D9-A148-06 10 65024429 65024429 A G JMJD1C Silent p.S143S 0.24 TCGA-D9-A148-06 10 69682683 69682683 C T HERC4 3'UTR 0.20 TCGA-D9-A148-06 10 94267332 94267332 C T IDE Silent p.K415K 0.49 TCGA-D9-A148-06 10 97983740 97983740 G A BLNK Nonsense_Mutation p.R123* 0.49 TCGA-D9-A148-06 11 102988580 102988580 A T DYNC2H1 Missense_Mutation p.K329N 0.21 benign(0.003) TCGA-D9-A148-06 11 194501 194501 G A SCGB1C1 3'UTR 0.23 TCGA-D9-A148-06 11 21135260 21135260 G A NELL1 Missense_Mutation p.E476K 0.31 tolerated(0.05) benign(0.38) TCGA-D9-A148-06 11 2424493 2424493 G A TSSC4 Silent p.E210E 0.37 TCGA-D9-A148-06 11 320742 320742 C T IFITM3 Silent p.K24K 0.44 TCGA-D9-A148-06 11 36293339 36293339 G A COMMD9 3'Flank 0.39 TCGA-D9-A148-06 11 46001479 46001479 T G PHF21A Silent p.V64V 0.20 TCGA-D9-A148-06 11 4703441 4703441 G A OR51E2 Silent p.F167F 0.23 TCGA-D9-A148-06 11 47311496 47311496 G T MADD Missense_Mutation p.K965N 0.09 deleterious(0) possibly_damaging(0.786) TCGA-D9-A148-06 11 47469652 47469652 G A RAPSN Silent p.F81F 0.12 TCGA-D9-A148-06 11 5080763 5080763 G A OR52E2 Missense_Mutation p.P32L 0.60 deleterious(0.02) possibly_damaging(0.593) TCGA-D9-A148-06 11 541582 541582 G T LRRC56 Nonsense_Mutation p.E75* 0.37 TCGA-D9-A148-06 11 56185123 56185123 C T OR5R1 Missense_Mutation p.E196K 0.39 tolerated(0.06) benign(0.345) TCGA-D9-A148-06 11 58170611 58170611 G A OR5B3 Missense_Mutation p.S91F 0.32 deleterious_low_confidence(0.01) benign(0.369) TCGA-D9-A148-06 11 59283084 59283084 G A OR4D9 Silent p.R233R 0.41 TCGA-D9-A148-06 11 61017253 61017253 G A PGA5 Missense_Mutation p.D296N 0.28 tolerated(0.3) benign(0.008) TCGA-D9-A148-06 11 65417243 65417243 C T SIPA1 Missense_Mutation p.P885S 0.29 tolerated(0.21) benign(0.001) TCGA-D9-A148-06 11 65417244 65417244 C T SIPA1 Missense_Mutation p.P885L 0.30 tolerated(0.05) benign(0.002) TCGA-D9-A148-06 11 72492032 72492032 C T STARD10 Silent p.L65L 0.25 TCGA-D9-A148-06 11 85606409 85606409 G A CCDC83 Silent p.K195K 0.43 TCGA-D9-A148-06 12 102468181 102468181 C G NUP37 Missense_Mutation p.C311S 0.12 deleterious(0) probably_damaging(0.942) TCGA-D9-A148-06 12 118293345 118293345 C T KSR2 Silent p.L120L 0.50 TCGA-D9-A148-06 12 12334021 12334021 C T LRP6 Silent p.E443E 0.39 TCGA-D9-A148-06 12 123645368 123645368 G A MPHOSPH9 Missense_Mutation p.S985F 0.26 deleterious(0.03) possibly_damaging(0.862) TCGA-D9-A148-06 12 124330680 124330680 G A DNAH10 Silent p.R1813R 0.23 TCGA-D9-A148-06 12 31249911 31249911 C T DDX11 Silent p.I583I 0.29 TCGA-D9-A148-06 12 31448266 31448266 A G FAM60A Silent p.L44L 0.18 TCGA-D9-A148-06 12 32945415 32945415 C T PKP2 Silent p.K863K 0.42 TCGA-D9-A148-06 12 41967311 41967311 C G PDZRN4 Missense_Mutation p.I910M 0.39 deleterious(0) possibly_damaging(0.671) TCGA-D9-A148-06 12 4648020 4648020 G A RAD51AP1 5'Flank 0.31 TCGA-D9-A148-06 12 48189006 48189006 G A HDAC7 Silent p.P415P 0.39 TCGA-D9-A148-06 12 49420214 49420214 G A KMT2D Missense_Mutation p.R5179C 0.29 unknown(0) TCGA-D9-A148-06 12 49420215 49420215 G A KMT2D Silent p.F5178F 0.28 TCGA-D9-A148-06 12 49425221 49425221 G A KMT2D Missense_Mutation p.P4423S 0.38 unknown(0) TCGA-D9-A148-06 12 49522723 49522723 T C TUBA1B Splice_Site p.X126_splice 0.21 TCGA-D9-A148-06 12 50355884 50355884 C T AQP5 Silent p.G28G 0.33 TCGA-D9-A148-06 12 50355885 50355885 C T AQP5 Silent p.L29L 0.33 TCGA-D9-A148-06 12 5155192 5155192 G A KCNA5 3'UTR 0.39 TCGA-D9-A148-06 12 53045889 53045889 C T KRT2 Missense_Mutation p.G13E 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-D9-A148-06 12 55042064 55042064 G A DCD Silent p.F8F 0.23 TCGA-D9-A148-06 12 55615394 55615394 G A OR10A7 Missense_Mutation p.E196K 0.41 deleterious(0.03) possibly_damaging(0.9) TCGA-D9-A148-06 12 5687593 5687593 G A ANO2 Silent p.L775L 0.38 TCGA-D9-A148-06 12 58114030 58114030 G A OS9 Silent p.E583E 0.38 TCGA-D9-A148-06 12 7947353 7947353 C T NANOG Missense_Mutation p.P194S 0.70 tolerated(0.1) benign(0.164) TCGA-D9-A148-06 12 8048124 8048124 C T NANOGP1 RNA 0.37 TCGA-D9-A148-06 12 95927253 95927253 G A USP44 Silent p.S260S 0.27 TCGA-D9-A148-06 12 96311013 96311013 C T CCDC38 Missense_Mutation p.M66I 0.37 deleterious(0.02) probably_damaging(0.934) TCGA-D9-A148-06 13 111142067 111142067 G A COL4A2 Missense_Mutation p.G1094E 0.66 probably_damaging(0.982) TCGA-D9-A148-06 13 35733681 35733681 G A NBEA Missense_Mutation p.D1125N 0.58 tolerated_low_confidence(0.48) benign(0.001) TCGA-D9-A148-06 13 38924147 38924147 C T UFM1 Missense_Mutation p.S5F 0.54 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-D9-A148-06 13 72440119 72440119 C T DACH1 Silent p.V263V 0.63 TCGA-D9-A148-06 13 79929422 79929422 T A RBM26 Missense_Mutation p.N596I 0.47 deleterious(0) probably_damaging(0.999) TCGA-D9-A148-06 14 22180877 22180877 C T TRAV2 Missense_Mutation p.S50F 0.67 deleterious(0.02) probably_damaging(0.991) TCGA-D9-A148-06 14 22671215 22671215 C T TRAV26-2 Missense_Mutation p.R94C 0.26 deleterious(0.01) possibly_damaging(0.59) TCGA-D9-A148-06 14 24711504 24711504 A T TINF2 Missense_Mutation p.L12Q 0.19 deleterious(0) possibly_damaging(0.883) TCGA-D9-A148-06 14 24771298 24771298 C T NOP9 Silent p.S312S 0.57 TCGA-D9-A148-06 14 31204066 31204066 T C SCFD1 Splice_Site p.X635_splice 0.59 TCGA-D9-A148-06 14 33292161 33292161 G A AKAP6 Silent p.S1714S 0.68 TCGA-D9-A148-06 14 56755313 56755313 C T PELI2 Silent p.F156F 0.19 TCGA-D9-A148-06 14 79111549 79111549 G A NRXN3 5'UTR 0.25 TCGA-D9-A148-06 14 92911661 92911661 T C SLC24A4 Missense_Mutation p.F220L 0.26 tolerated(0.05) benign(0.2) TCGA-D9-A148-06 14 94395003 94395003 G A FAM181A Silent p.Q186Q 0.58 TCGA-D9-A148-06 15 101562697 101562697 C - LRRK1 Frame_Shift_Del p.L655Wfs*107 0.15 TCGA-D9-A148-06 15 101814677 101814677 G A VIMP Silent p.S144S 0.57 TCGA-D9-A148-06 15 31793901 31793901 C T OTUD7A Missense_Mutation p.R381K 0.16 tolerated(1) probably_damaging(0.977) TCGA-D9-A148-06 15 41165488 41165488 C T RHOV Missense_Mutation p.G160E 0.21 tolerated(0.27) probably_damaging(0.982) TCGA-D9-A148-06 15 41826993 41826993 G A RPAP1 Missense_Mutation p.H228Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-D9-A148-06 15 44053692 44053692 T C PDIA3 Silent p.F145F 0.20 TCGA-D9-A148-06 15 45413409 45413409 G A DUOXA1 Silent p.F72F 0.35 TCGA-D9-A148-06 15 56386859 56386859 G A RFX7 Missense_Mutation p.P1023S 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A148-06 15 58302877 58302877 C A ALDH1A2 Missense_Mutation p.D155Y 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 15 59192026 59192026 T G SLTM Missense_Mutation p.T234P 0.61 tolerated(0.18) unknown(0) TCGA-D9-A148-06 15 62539289 62539289 C T AC126323.1 5'Flank 0.37 TCGA-D9-A148-06 15 64386039 64386039 A G FAM96A 5'UTR 0.62 TCGA-D9-A148-06 15 64455229 64455229 G A PPIB 5'UTR 0.36 TCGA-D9-A148-06 15 65108888 65108888 C G PIF1 Missense_Mutation p.R584P 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 15 67681217 67681217 A C IQCH Missense_Mutation p.E502A 0.32 deleterious(0) possibly_damaging(0.705) TCGA-D9-A148-06 15 72192092 72192092 G A MYO9A Nonsense_Mutation p.Q1136* 0.43 TCGA-D9-A148-06 15 74290560 74290560 C T PML Silent p.R115R 0.50 TCGA-D9-A148-06 15 75890955 75890955 C G SNUPN Missense_Mutation p.W276S 0.12 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 15 77425888 77425888 C T PEAK1 Missense_Mutation p.S1179N 0.12 tolerated(0.77) benign(0.002) TCGA-D9-A148-06 15 80873662 80873662 C T ARNT2 Missense_Mutation p.S612F 0.58 deleterious(0.03) possibly_damaging(0.485) TCGA-D9-A148-06 16 19455460 19455460 C T TMC5 Silent p.P282P 0.47 TCGA-D9-A148-06 16 29367206 29367206 C T SNX29P2 RNA 0.52 TCGA-D9-A148-06 16 30977592 30977592 T A SETD1A Missense_Mutation p.M797K 0.20 benign(0) TCGA-D9-A148-06 16 31503655 31503655 A G C16orf58 Missense_Mutation p.V365A 0.50 deleterious(0.01) benign(0.023) TCGA-D9-A148-06 16 3187371 3187371 G A ZNF213 Silent p.Q30Q 0.46 TCGA-D9-A148-06 16 3432960 3432960 C G ZSCAN32 Missense_Mutation p.R450S 0.23 tolerated(0.5) benign(0.029) TCGA-D9-A148-06 16 4242966 4242966 C T SRL Splice_Site p.X204_splice 0.41 TCGA-D9-A148-06 16 476580 476580 C T RAB11FIP3 Missense_Mutation p.P192S 0.21 tolerated_low_confidence(0.45) benign(0.015) TCGA-D9-A148-06 16 48227838 48227838 C T ABCC11 Silent p.T820T 0.77 TCGA-D9-A148-06 16 54145919 54145919 T A FTO 3'UTR 0.60 TCGA-D9-A148-06 16 54145920 54145920 C T FTO 3'UTR 0.64 TCGA-D9-A148-06 16 618191 618191 C T NHLRC4 Silent p.F48F 0.26 TCGA-D9-A148-06 16 68597607 68597607 G A ZFP90 Missense_Mutation p.G306E 0.45 deleterious(0.03) probably_damaging(1) TCGA-D9-A148-06 16 8729067 8729067 C T METTL22 Nonsense_Mutation p.R200* 0.46 TCGA-D9-A148-06 17 19315925 19315925 G A RNF112 Silent p.L70L 0.69 TCGA-D9-A148-06 17 19315926 19315926 G T RNF112 Missense_Mutation p.D71Y 0.69 deleterious(0.01) possibly_damaging(0.717) TCGA-D9-A148-06 17 20805809 20805809 C T RP11-344E13.3 RNA 0.73 TCGA-D9-A148-06 17 26696733 26696733 C T VTN Silent p.G108G 0.58 TCGA-D9-A148-06 17 26696734 26696734 C T VTN Missense_Mutation p.G108E 0.56 tolerated(1) benign(0.001) TCGA-D9-A148-06 17 35873037 35873037 C T DUSP14 3'UTR 0.66 TCGA-D9-A148-06 17 39019850 39019850 G A KRT12 Missense_Mutation p.R328C 0.23 deleterious(0) probably_damaging(0.964) TCGA-D9-A148-06 17 39253944 39253944 G A KRTAP4-8 Silent p.I131I 0.93 TCGA-D9-A148-06 17 39471492 39471492 G - KRTAP17-1 3'UTR 0.62 TCGA-D9-A148-06 17 42429791 42429791 T G GRN Missense_Mutation p.V499G 0.12 tolerated(0.44) benign(0.005) TCGA-D9-A148-06 17 440338 440338 C T VPS53 Missense_Mutation p.V649I 0.52 tolerated(0.48) benign(0.267) TCGA-D9-A148-06 17 46799818 46799818 G A PRAC1 5'UTR 0.16 TCGA-D9-A148-06 17 48184467 48184467 G A PDK2 Missense_Mutation p.C212Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-D9-A148-06 17 48669190 48669190 C T CACNA1G Silent p.L910L 0.18 TCGA-D9-A148-06 17 4923933 4923933 G A KIF1C Missense_Mutation p.E633K 0.69 deleterious(0.01) possibly_damaging(0.636) TCGA-D9-A148-06 17 61889322 61889322 A G DDX42 Missense_Mutation p.I477V 0.09 tolerated(1) benign(0.004) TCGA-D9-A148-06 17 67132222 67132222 T C ABCA6 Intron 0.17 TCGA-D9-A148-06 17 71380034 71380034 G A SDK2 Silent p.A1562A 0.26 TCGA-D9-A148-06 17 71386490 71386490 C T SDK2 Silent p.T1376T 0.35 TCGA-D9-A148-06 17 72477958 72477958 G A CD300A Missense_Mutation p.E254K 0.55 deleterious(0.01) probably_damaging(0.972) TCGA-D9-A148-06 17 73745079 73745079 C T ITGB4 Missense_Mutation p.A1090V 0.28 deleterious(0.01) benign(0.405) TCGA-D9-A148-06 17 76458971 76458971 C T DNAH17 Silent p.E3029E 0.21 TCGA-D9-A148-06 17 76676303 76676303 C T CYTH1 Missense_Mutation p.E363K 0.32 deleterious(0.01) benign(0.385) TCGA-D9-A148-06 17 8702360 8702360 C T MFSD6L Missense_Mutation p.E27K 0.76 tolerated(0.41) benign(0.013) TCGA-D9-A148-06 18 2892139 2892139 G A EMILIN2 Missense_Mutation p.E672K 0.25 tolerated(0.18) benign(0.37) TCGA-D9-A148-06 18 5956200 5956200 G A L3MBTL4 3'UTR 0.13 TCGA-D9-A148-06 18 61570538 61570538 A T SERPINB2 Nonstop_Mutation p.*416Lext*2 0.69 TCGA-D9-A148-06 19 10794134 10794134 C T ILF3 Silent p.F593F 0.53 TCGA-D9-A148-06 19 12503428 12503428 C T ZNF799 Silent p.R60R 0.42 TCGA-D9-A148-06 19 19206977 19206977 A C SLC25A42 Missense_Mutation p.D15A 0.38 tolerated(0.15) benign(0.001) TCGA-D9-A148-06 19 34887329 34887329 C T GPI Missense_Mutation p.H407Y 0.36 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-D9-A148-06 19 36278216 36278216 C T ARHGAP33 Nonsense_Mutation p.Q756* 0.36 TCGA-D9-A148-06 19 36334397 36334397 C T NPHS1 Missense_Mutation p.G771S 0.50 tolerated(0.34) benign(0.063) TCGA-D9-A148-06 19 36334398 36334398 C T NPHS1 Silent p.P770P 0.49 TCGA-D9-A148-06 19 40886647 40886649 CTC - HIPK4 In_Frame_Del p.E417del 0.31 TCGA-D9-A148-06 19 44792789 44792789 C T ZNF235 Missense_Mutation p.E267K 0.14 tolerated(0.19) benign(0.001) TCGA-D9-A148-06 19 50173529 50173529 C T BCL2L12 Silent p.F246F 0.23 TCGA-D9-A148-06 19 52521669 52521669 G A ZNF614 Silent p.L32L 0.51 TCGA-D9-A148-06 19 52521670 52521670 G T ZNF614 Missense_Mutation p.N31K 0.51 deleterious(0.01) benign(0.017) TCGA-D9-A148-06 19 55417933 55417933 G A NCR1 Silent p.K41K 0.20 TCGA-D9-A148-06 19 55451704 55451704 C T NLRP7 Silent p.L161L 0.50 TCGA-D9-A148-06 19 55670814 55670814 G A DNAAF3 Silent p.Y481Y 0.21 TCGA-D9-A148-06 19 582305 582305 G A BSG Splice_Site p.X357_splice 0.40 TCGA-D9-A148-06 19 58265665 58265665 C T ZNF776 Silent p.S389S 0.59 TCGA-D9-A148-06 19 7122746 7122746 C A INSR Missense_Mutation p.M1136I 0.22 tolerated(0.26) benign(0.081) TCGA-D9-A148-06 19 7830630 7830630 C T CLEC4M Silent p.S107S 0.46 TCGA-D9-A148-06 19 9083846 9083846 G C MUC16 Missense_Mutation p.P2657A 0.29 unknown(0) TCGA-D9-A148-06 19 9084638 9084638 G A MUC16 Missense_Mutation p.P2393S 0.28 unknown(0) TCGA-D9-A148-06 1 100353539 100353539 C T AGL Missense_Mutation p.A896V 0.47 tolerated(1) benign(0.007) TCGA-D9-A148-06 1 100353540 100353540 C T AGL Silent p.A896A 0.47 TCGA-D9-A148-06 1 117297114 117297114 G A CD2 5'UTR 0.19 TCGA-D9-A148-06 1 117311185 117311185 C T CD2 Missense_Mutation p.S279F 0.79 deleterious(0.01) possibly_damaging(0.892) TCGA-D9-A148-06 1 150532684 150532684 G A ADAMTSL4 3'UTR 0.60 TCGA-D9-A148-06 1 151773683 151773683 C T LINGO4 Missense_Mutation p.E500K 0.58 tolerated(0.43) probably_damaging(0.989) TCGA-D9-A148-06 1 152188349 152188349 G A HRNR Missense_Mutation p.S1919L 0.08 unknown(0) TCGA-D9-A148-06 1 154316679 154316679 C T ATP8B2 Missense_Mutation p.L695F 0.11 tolerated(0.08) possibly_damaging(0.489) TCGA-D9-A148-06 1 156504372 156504372 C T IQGAP3 Missense_Mutation p.A1221T 0.63 tolerated(0.13) benign(0.181) TCGA-D9-A148-06 1 159557901 159557901 G A APCS Silent p.G25G 0.67 TCGA-D9-A148-06 1 159558413 159558413 C T APCS Missense_Mutation p.P196L 0.61 tolerated(0.65) benign(0.055) TCGA-D9-A148-06 1 161198560 161198560 C T TOMM40L Missense_Mutation p.S247F 0.19 deleterious(0) possibly_damaging(0.877) TCGA-D9-A148-06 1 165180005 165180005 C T LMX1A Silent p.E226E 0.58 TCGA-D9-A148-06 1 175066699 175066699 G A TNN Missense_Mutation p.G579R 0.25 tolerated(0.09) benign(0.02) TCGA-D9-A148-06 1 180068003 180068003 C T CEP350 Silent p.F3024F 0.18 TCGA-D9-A148-06 1 180166318 180166318 T C QSOX1 3'UTR 0.33 TCGA-D9-A148-06 1 200817884 200817884 C T CAMSAP2 Missense_Mutation p.P663S 0.67 deleterious(0.02) probably_damaging(1) TCGA-D9-A148-06 1 201196074 201196074 G A IGFN1 Silent p.L3617L 0.66 TCGA-D9-A148-06 1 201330280 201330280 A C TNNT2 Intron 0.15 TCGA-D9-A148-06 1 201750396 201750396 C T NAV1 Missense_Mutation p.S541F 0.17 deleterious(0) probably_damaging(0.974) TCGA-D9-A148-06 1 204412635 204412635 C T PIK3C2B Silent p.L986L 0.56 TCGA-D9-A148-06 1 205033865 205033865 C T CNTN2 Silent p.I502I 0.16 TCGA-D9-A148-06 1 205033866 205033866 C T CNTN2 Silent p.L503L 0.16 TCGA-D9-A148-06 1 207087397 207087397 C T FAIM3 Missense_Mutation p.G27E 0.65 deleterious(0) probably_damaging(0.979) TCGA-D9-A148-06 1 223568233 223568233 C T C1orf65 Silent p.R472R 0.29 TCGA-D9-A148-06 1 228481085 228481085 G A OBSCN Silent p.R4062R 0.32 TCGA-D9-A148-06 1 236646887 236646887 C T EDARADD 3'Flank 0.58 TCGA-D9-A148-06 1 248436865 248436865 C T OR2T33 Silent p.L84L 0.23 TCGA-D9-A148-06 1 27121634 27121634 C T PIGV Missense_Mutation p.P370L 0.62 tolerated(0.08) benign(0.133) TCGA-D9-A148-06 1 32051038 32051038 C T TINAGL1 Intron 0.20 TCGA-D9-A148-06 1 32221987 32221987 G A BAI2 Silent p.L151L 0.55 TCGA-D9-A148-06 1 33778437 33778437 G A A3GALT2 Silent p.G26G 0.23 TCGA-D9-A148-06 1 47548050 47548050 C T CYP4Z1 Missense_Mutation p.R137C 0.61 deleterious(0) probably_damaging(0.965) TCGA-D9-A148-06 1 6181563 6181563 C T CHD5 Silent p.L1590L 0.74 TCGA-D9-A148-06 1 74957790 74957790 C T TNNI3K Missense_Mutation p.P832S 0.11 tolerated_low_confidence(0.09) benign(0.38) TCGA-D9-A148-06 1 75037720 75037720 C T C1orf173 Missense_Mutation p.G1225E 0.20 tolerated(0.23) benign(0.083) TCGA-D9-A148-06 1 86905984 86905984 C T CLCA2 Silent p.L453L 0.65 TCGA-D9-A148-06 1 93201978 93201978 C T EVI5 Silent p.L86L 0.13 TCGA-D9-A148-06 20 11898853 11898853 G A BTBD3 5'UTR 0.87 TCGA-D9-A148-06 20 13769244 13769244 C T NDUFAF5 Silent p.P91P 0.73 TCGA-D9-A148-06 20 19261652 19261652 G A SLC24A3 Silent p.A64A 0.78 TCGA-D9-A148-06 20 36869541 36869541 G A KIAA1755 Missense_Mutation p.S331F 0.31 tolerated(0.44) benign(0.01) TCGA-D9-A148-06 20 44592393 44592393 C T ZNF335 Missense_Mutation p.G447S 0.26 deleterious(0.04) possibly_damaging(0.901) TCGA-D9-A148-06 20 45812033 45812033 G A EYA2 Silent p.A510A 0.58 TCGA-D9-A148-06 20 50768918 50768918 T C ZFP64 Missense_Mutation p.T605A 0.13 tolerated(0.31) benign(0) TCGA-D9-A148-06 20 55027732 55027732 C T CASS4 Silent p.V500V 0.55 TCGA-D9-A148-06 20 56139563 56139563 G A PCK1 Silent p.S404S 0.27 TCGA-D9-A148-06 20 57768418 57768418 G A ZNF831 Missense_Mutation p.D782N 0.25 deleterious(0.03) possibly_damaging(0.82) TCGA-D9-A148-06 20 58381145 58381145 G A PHACTR3 Silent p.R408R 0.55 TCGA-D9-A148-06 20 60912694 60912694 G A LAMA5 Missense_Mutation p.R706W 0.08 probably_damaging(0.999) TCGA-D9-A148-06 20 61957455 61957455 G A COL20A1 Missense_Mutation p.R1137K 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A148-06 21 19638416 19638416 G A CHODL 3'UTR 0.34 TCGA-D9-A148-06 21 46323296 46323296 G A ITGB2 Silent p.T161T 0.39 TCGA-D9-A148-06 21 46323297 46323297 G A ITGB2 Missense_Mutation p.T161I 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 22 21088363 21088363 G A PI4KA Silent p.N1340N 0.44 TCGA-D9-A148-06 22 23055665 23055665 G A IGLV3-21 Missense_Mutation p.D110N 0.26 deleterious(0.02) possibly_damaging(0.554) TCGA-D9-A148-06 22 23237605 23237605 G A IGLL5 Missense_Mutation p.E126K 0.30 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-D9-A148-06 22 25115329 25115329 T A PIWIL3 3'UTR 0.10 TCGA-D9-A148-06 22 26222395 26222395 G A MYO18B Silent p.V905V 0.21 TCGA-D9-A148-06 22 30202248 30202248 C T ASCC2 Missense_Mutation p.V373M 0.11 deleterious(0) possibly_damaging(0.748) TCGA-D9-A148-06 22 30953356 30953356 G A GAL3ST1 Silent p.P8P 0.58 TCGA-D9-A148-06 22 30953357 30953357 G A GAL3ST1 Missense_Mutation p.P8L 0.58 tolerated_low_confidence(0.19) benign(0.005) TCGA-D9-A148-06 22 35481636 35481636 C T ISX Missense_Mutation p.L230F 0.62 tolerated(0.2) benign(0.039) TCGA-D9-A148-06 22 39219117 39219117 G A NPTXR Missense_Mutation p.H417Y 0.30 deleterious(0.02) benign(0.139) TCGA-D9-A148-06 22 45785651 45785651 G A SMC1B Nonsense_Mutation p.R558* 0.62 TCGA-D9-A148-06 2 113333151 113333151 C G POLR1B Missense_Mutation p.P1085A 0.49 tolerated(0.57) benign(0.01) TCGA-D9-A148-06 2 118575276 118575276 G C DDX18 Missense_Mutation p.K114N 0.24 deleterious(0.03) benign(0.003) TCGA-D9-A148-06 2 132290454 132290454 C T CCDC74A Silent p.S298S 0.55 TCGA-D9-A148-06 2 135738899 135738899 T C MAP3K19 Missense_Mutation p.I1138V 0.28 deleterious(0) probably_damaging(0.991) TCGA-D9-A148-06 2 141460004 141460004 C T LRP1B Missense_Mutation p.D2048N 0.20 possibly_damaging(0.831) TCGA-D9-A148-06 2 141460024 141460024 C T LRP1B Nonsense_Mutation p.W2041* 0.19 TCGA-D9-A148-06 2 141806610 141806610 G A LRP1B Silent p.F578F 0.20 TCGA-D9-A148-06 2 163374414 163374414 G A KCNH7 Missense_Mutation p.P240S 0.36 deleterious(0.05) benign(0.097) TCGA-D9-A148-06 2 167134676 167134676 A C SCN9A Missense_Mutation p.L820V 0.22 deleterious(0.01) possibly_damaging(0.668) TCGA-D9-A148-06 2 171256757 171256757 C T MYO3B Silent p.F617F 0.45 TCGA-D9-A148-06 2 171819372 171819372 C G GORASP2 Missense_Mutation p.L312V 0.24 deleterious(0.02) benign(0.002) TCGA-D9-A148-06 2 175306874 175306874 T A GPR155 Missense_Mutation p.H716L 0.13 deleterious(0.01) possibly_damaging(0.454) TCGA-D9-A148-06 2 179579149 179579149 C T TTN Nonsense_Mutation p.W8784* 0.32 TCGA-D9-A148-06 2 187627296 187627296 C T FAM171B Silent p.L743L 0.24 TCGA-D9-A148-06 2 190532655 190532655 C T ASNSD1 Missense_Mutation p.H544Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A148-06 2 196681368 196681368 C T DNAH7 Missense_Mutation p.E3249K 0.29 tolerated(0.6) benign(0.051) TCGA-D9-A148-06 2 203684597 203684597 G A ICA1L Missense_Mutation p.R129C 0.25 deleterious(0) probably_damaging(0.94) TCGA-D9-A148-06 2 216289995 216289995 G A FN1 Silent p.F286F 0.74 TCGA-D9-A148-06 2 217279882 217279882 C T SMARCAL1 Missense_Mutation p.P152L 0.75 tolerated(0.68) benign(0) TCGA-D9-A148-06 2 226446804 226446804 G A NYAP2 Missense_Mutation p.R224Q 0.09 tolerated(0.3) possibly_damaging(0.453) TCGA-D9-A148-06 2 25467476 25467476 G A DNMT3A Nonsense_Mutation p.Q534* 0.13 TCGA-D9-A148-06 2 25990459 25990459 G C ASXL2 Silent p.L256L 0.36 TCGA-D9-A148-06 2 26624848 26624848 G A DRC1 5'UTR 0.78 TCGA-D9-A148-06 2 36691751 36691751 G T CRIM1 Missense_Mutation p.G315V 0.16 deleterious(0) probably_damaging(0.997) TCGA-D9-A148-06 2 37873383 37873383 T A CDC42EP3 Missense_Mutation p.Q116H 0.20 deleterious(0) probably_damaging(0.998) TCGA-D9-A148-06 2 44539728 44539728 G A SLC3A1 Missense_Mutation p.G446S 0.74 deleterious(0.01) possibly_damaging(0.77) TCGA-D9-A148-06 2 62728427 62728427 G A TMEM17 Missense_Mutation p.R172C 0.15 deleterious(0) possibly_damaging(0.614) TCGA-D9-A148-06 2 73677148 73677148 C T ALMS1 Missense_Mutation p.P1164L 0.69 benign(0.219) TCGA-D9-A148-06 2 74041260 74041260 G A C2orf78 Missense_Mutation p.E252K 0.15 deleterious(0) possibly_damaging(0.906) TCGA-D9-A148-06 2 74907289 74907289 C T SEMA4F Missense_Mutation p.R756W 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.836) TCGA-D9-A148-06 3 102176642 102176642 C T ZPLD1 Missense_Mutation p.S192F 0.42 deleterious(0) possibly_damaging(0.847) TCGA-D9-A148-06 3 124689608 124689608 C T HEG1 Missense_Mutation p.G1345E 0.36 deleterious(0) probably_damaging(0.999) TCGA-D9-A148-06 3 124689609 124689609 C T HEG1 Missense_Mutation p.G1345R 0.31 deleterious(0) probably_damaging(0.999) TCGA-D9-A148-06 3 130282243 130282243 C T COL6A6 Silent p.P132P 0.40 TCGA-D9-A148-06 3 13860703 13860703 G A WNT7A Missense_Mutation p.P263L 0.36 deleterious(0) possibly_damaging(0.742) TCGA-D9-A148-06 3 138763024 138763024 C T PRR23C Missense_Mutation p.E147K 0.31 deleterious(0) possibly_damaging(0.887) TCGA-D9-A148-06 3 141295844 141295844 G A RASA2 Missense_Mutation p.D496N 0.21 tolerated(0.7) benign(0.039) TCGA-D9-A148-06 3 146166996 146166996 G A PLSCR2 Silent p.L287L 0.41 TCGA-D9-A148-06 3 151075068 151075068 A C MED12L Missense_Mutation p.Y875S 0.20 deleterious(0) possibly_damaging(0.777) TCGA-D9-A148-06 3 151075134 151075134 A T MED12L Missense_Mutation p.N897I 0.19 deleterious(0) benign(0.115) TCGA-D9-A148-06 3 15492945 15492945 C T COLQ 3'UTR 0.46 TCGA-D9-A148-06 3 15677086 15677086 C G BTD Missense_Mutation p.S67C 0.18 deleterious(0.01) possibly_damaging(0.687) TCGA-D9-A148-06 3 167023529 167023529 C T ZBBX Missense_Mutation p.E543K 0.31 tolerated(0.91) benign(0.006) TCGA-D9-A148-06 3 178921433 178921433 A T PIK3CA Silent p.P305P 0.20 TCGA-D9-A148-06 3 183967612 183967612 G A ECE2 Missense_Mutation p.D44N 0.44 deleterious_low_confidence(0.02) benign(0) TCGA-D9-A148-06 3 194146149 194146149 T A ATP13A3 Missense_Mutation p.I1079F 0.49 deleterious(0) benign(0.049) TCGA-D9-A148-06 3 35785977 35785977 G A ARPP21 Intron 0.36 TCGA-D9-A148-06 3 36779958 36779958 C T DCLK3 Missense_Mutation p.E65K 0.50 deleterious(0.01) benign(0.091) TCGA-D9-A148-06 3 36898030 36898030 C T TRANK1 Silent p.V1017V 0.39 TCGA-D9-A148-06 3 41957541 41957541 G A ULK4 Missense_Mutation p.S244F 0.35 tolerated(0.17) benign(0.217) TCGA-D9-A148-06 3 42735116 42735116 C T HHATL Missense_Mutation p.R414Q 0.50 tolerated(0.74) benign(0.003) TCGA-D9-A148-06 3 48563046 48563046 G A PFKFB4 Silent p.F348F 0.39 TCGA-D9-A148-06 3 49056009 49056009 G A DALRD3 5'Flank 0.35 TCGA-D9-A148-06 3 49200991 49200991 C T CCDC71 Silent p.G217G 0.41 TCGA-D9-A148-06 3 52433701 52433701 G A DNAH1 Silent p.E4194E 0.35 TCGA-D9-A148-06 3 52731861 52731877 CCACAGGAATCTCCTCT - GLT8D1 Frame_Shift_Del p.Q63Hfs*6 0.29 TCGA-D9-A148-06 3 87309110 87309110 T G POU1F1 Missense_Mutation p.K296N 0.34 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 4 100205660 100205660 C T ADH1A Missense_Mutation p.E155K 0.67 deleterious(0.01) probably_damaging(0.987) TCGA-D9-A148-06 4 100521847 100521847 G C MTTP Missense_Mutation p.G398A 0.63 tolerated(0.6) benign(0.022) TCGA-D9-A148-06 4 101961690 101961690 C T PPP3CA Missense_Mutation p.R397K 0.20 tolerated(0.5) benign(0.011) TCGA-D9-A148-06 4 10445449 10445449 A G ZNF518B Missense_Mutation p.M835T 0.78 tolerated(0.57) benign(0.002) TCGA-D9-A148-06 4 155158041 155158041 G A DCHS2 Missense_Mutation p.S2133F 0.65 deleterious(0.03) possibly_damaging(0.452) TCGA-D9-A148-06 4 185615812 185615812 A C PRIMPOL Missense_Mutation p.Y521S 0.23 benign(0.004) TCGA-D9-A148-06 4 38091574 38091574 T A TBC1D1 Missense_Mutation p.L691H 0.82 deleterious(0.02) probably_damaging(0.976) TCGA-D9-A148-06 4 89591116 89591116 C T HERC3 Missense_Mutation p.P580L 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A148-06 5 101748766 101748766 T G SLCO6A1 Silent p.G518G 0.43 TCGA-D9-A148-06 5 111066450 111066450 C T NREP 3'UTR 0.52 TCGA-D9-A148-06 5 131039813 131039813 G A FNIP1 Missense_Mutation p.S354L 0.60 deleterious(0) probably_damaging(0.996) TCGA-D9-A148-06 5 131309057 131309057 A G ACSL6 Missense_Mutation p.F369L 0.32 deleterious(0.01) possibly_damaging(0.452) TCGA-D9-A148-06 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.42 benign(0) TCGA-D9-A148-06 5 140216216 140216216 T C PCDHA7 Missense_Mutation p.F750L 0.21 deleterious_low_confidence(0.05) benign(0.003) TCGA-D9-A148-06 5 140389311 140389311 C T PCDHAC1 Missense_Mutation p.P894L 0.39 deleterious(0) probably_damaging(0.997) TCGA-D9-A148-06 5 140562580 140562580 G A PCDHB16 Missense_Mutation p.G149E 0.62 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-D9-A148-06 5 140710468 140710468 C T PCDHGA1 Missense_Mutation p.P73S 0.52 deleterious_low_confidence(0) benign(0.103) TCGA-D9-A148-06 5 140801022 140801022 C T PCDHGA11 Silent p.F76F 0.68 TCGA-D9-A148-06 5 141051754 141051754 G A ARAP3 Silent p.A500A 0.32 TCGA-D9-A148-06 5 1441597 1441597 G A SLC6A3 Silent p.L99L 0.33 TCGA-D9-A148-06 5 161569262 161569262 G A GABRG2 Missense_Mutation p.V328I 0.72 tolerated(0.42) probably_damaging(0.996) TCGA-D9-A148-06 5 19483644 19483644 G A CDH18 Silent p.L550L 0.37 TCGA-D9-A148-06 5 35857004 35857004 C T IL7R 5'UTR 0.27 TCGA-D9-A148-06 5 37022475 37022475 C T NIPBL Silent p.L1853L 0.30 TCGA-D9-A148-06 5 41181509 41181509 G A C6 Silent p.I293I 0.22 TCGA-D9-A148-06 5 434652 434652 G A AHRR Silent p.R621R 0.25 TCGA-D9-A148-06 5 76003063 76003063 G A IQGAP2 Missense_Mutation p.M1551I 0.18 deleterious(0) probably_damaging(0.938) TCGA-D9-A148-06 5 82948428 82948428 C T HAPLN1 Missense_Mutation p.G106R 0.17 deleterious(0.01) benign(0.43) TCGA-D9-A148-06 5 83433158 83433158 C T EDIL3 Missense_Mutation p.E124K 0.35 tolerated(0.88) probably_damaging(0.911) TCGA-D9-A148-06 5 90084111 90084111 A T GPR98 Missense_Mutation p.K4626I 0.23 probably_damaging(0.979) TCGA-D9-A148-06 6 110763784 110763784 G A SLC22A16 Silent p.I282I 0.47 TCGA-D9-A148-06 6 117248363 117248363 C T RFX6 Missense_Mutation p.P687S 0.45 tolerated_low_confidence(0.14) benign(0.003) TCGA-D9-A148-06 6 131912565 131912565 C T MED23 Missense_Mutation p.D1192N 0.20 tolerated(1) benign(0.032) TCGA-D9-A148-06 6 135516936 135516936 C T MYB Silent p.A333A 0.18 TCGA-D9-A148-06 6 135521533 135521533 C A MYB Missense_Mutation p.L644M 0.31 deleterious(0.04) probably_damaging(0.915) TCGA-D9-A148-06 6 136599030 136599030 G A BCLAF1 Missense_Mutation p.T330I 0.13 deleterious(0.04) possibly_damaging(0.702) TCGA-D9-A148-06 6 138628449 138628449 G A KIAA1244 Nonsense_Mutation p.W1296* 0.34 TCGA-D9-A148-06 6 147124058 147124058 C T ADGB Intron 0.19 TCGA-D9-A148-06 6 152719759 152719759 G C SYNE1 Missense_Mutation p.L2449V 0.20 benign(0.265) TCGA-D9-A148-06 6 158363945 158363945 C T SNX9 3'UTR 0.58 TCGA-D9-A148-06 6 159398873 159398873 G A RSPH3 Silent p.I460I 0.60 TCGA-D9-A148-06 6 159653438 159653438 C T FNDC1 Missense_Mutation p.R632C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-D9-A148-06 6 168445549 168445549 G A KIF25 Missense_Mutation p.S343N 0.18 tolerated(0.35) possibly_damaging(0.511) TCGA-D9-A148-06 6 17543150 17543150 C T CAP2 Missense_Mutation p.S362L 0.37 deleterious(0.02) possibly_damaging(0.904) TCGA-D9-A148-06 6 26509343 26509343 G T BTN1A1 Missense_Mutation p.D508Y 0.09 deleterious(0.01) possibly_damaging(0.718) TCGA-D9-A148-06 6 31079318 31079318 C T C6orf15 Missense_Mutation p.G273E 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-D9-A148-06 6 31500583 31500583 G A DDX39B Missense_Mutation p.L281F 0.27 deleterious(0.03) possibly_damaging(0.733) TCGA-D9-A148-06 6 31500584 31500584 G A DDX39B Silent p.D280D 0.28 TCGA-D9-A148-06 6 33403030 33403030 C T SYNGAP1 Missense_Mutation p.S204F 0.56 deleterious(0) possibly_damaging(0.825) TCGA-D9-A148-06 6 55625290 55625290 C T BMP5 Missense_Mutation p.E357K 0.61 deleterious(0) probably_damaging(0.955) TCGA-D9-A148-06 6 70065728 70065728 G A BAI3 Missense_Mutation p.D1191N 0.51 deleterious(0.01) probably_damaging(0.915) TCGA-D9-A148-06 6 7583534 7583534 G A DSP Silent p.R2013R 0.34 TCGA-D9-A148-06 6 99365585 99365585 G A FBXL4 Missense_Mutation p.L175F 0.19 deleterious(0) possibly_damaging(0.86) TCGA-D9-A148-06 7 100320459 100320459 G A EPO Missense_Mutation p.G140E 0.14 deleterious(0.03) probably_damaging(0.967) TCGA-D9-A148-06 7 103175777 103175777 G A RELN Silent p.L2445L 0.33 TCGA-D9-A148-06 7 138764305 138764305 C T ZC3HAV1 Missense_Mutation p.R461K 0.28 tolerated(0.14) possibly_damaging(0.745) TCGA-D9-A148-06 7 13935665 13935665 G A ETV1 Silent p.A420A 0.48 TCGA-D9-A148-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-D9-A148-06 7 141803218 141803218 C T MGAM Silent p.F1825F 0.39 TCGA-D9-A148-06 7 142139544 142139544 G A TRBV7-6 Silent p.P27P 0.27 TCGA-D9-A148-06 7 142637616 142637616 G A C7orf34 Missense_Mutation p.G129E 0.32 tolerated_low_confidence(0.1) probably_damaging(0.988) TCGA-D9-A148-06 7 149543277 149543277 C T ZNF862 Silent p.F58F 0.34 TCGA-D9-A148-06 7 150164156 150164156 G A GIMAP8 Missense_Mutation p.E124K 0.43 tolerated(0.2) benign(0.217) TCGA-D9-A148-06 7 19156395 19156395 T C TWIST1 Missense_Mutation p.S184G 0.23 deleterious(0.04) benign(0.225) TCGA-D9-A148-06 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.34 tolerated(0.64) benign(0.002) TCGA-D9-A148-06 7 23871965 23871965 G A STK31 Missense_Mutation p.E1014K 0.46 deleterious_low_confidence(0.04) benign(0.024) TCGA-D9-A148-06 7 24325033 24325033 C T NPY Silent p.L58L 0.48 TCGA-D9-A148-06 7 31829790 31829790 G A PDE1C Intron 0.51 TCGA-D9-A148-06 7 3990576 3990576 C T SDK1 Missense_Mutation p.T290I 0.28 deleterious(0.04) benign(0.001) TCGA-D9-A148-06 7 4150372 4150372 G T SDK1 Missense_Mutation p.E1134D 0.31 deleterious(0.04) possibly_damaging(0.467) TCGA-D9-A148-06 7 41730107 41730107 G A INHBA Missense_Mutation p.S141F 0.33 deleterious(0) probably_damaging(0.992) TCGA-D9-A148-06 7 4821316 4821317 - A AP5Z1 Frame_Shift_Ins p.S100Kfs*25 0.11 TCGA-D9-A148-06 7 71177002 71177002 G A WBSCR17 Splice_Site p.X557_splice 0.50 TCGA-D9-A148-06 7 74564144 74564144 C A GTF2IRD2B Missense_Mutation p.L631I 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-D9-A148-06 7 82585181 82585181 C T PCLO Silent p.E1696E 0.33 TCGA-D9-A148-06 7 99754797 99754797 A C C7orf43 Missense_Mutation p.D255E 0.27 tolerated(0.09) possibly_damaging(0.866) TCGA-D9-A148-06 8 101014456 101014456 G A RGS22 Missense_Mutation p.P922S 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 8 110509206 110509206 G A PKHD1L1 Silent p.G3462G 0.42 TCGA-D9-A148-06 8 124195541 124195541 G A FAM83A Missense_Mutation p.D149N 0.33 deleterious(0) probably_damaging(0.993) TCGA-D9-A148-06 8 133141661 133141661 C T KCNQ3 Missense_Mutation p.G823R 0.39 tolerated(0.24) probably_damaging(0.983) TCGA-D9-A148-06 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.28 tolerated(0.06) benign(0.052) TCGA-D9-A148-06 8 142146806 142146806 G A DENND3 Missense_Mutation p.G21R 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.617) TCGA-D9-A148-06 8 142146807 142146807 G A DENND3 Missense_Mutation p.G21E 0.31 tolerated_low_confidence(0.14) benign(0.023) TCGA-D9-A148-06 8 26237767 26237767 C T BNIP3L 5'Flank 0.29 TCGA-D9-A148-06 8 27295002 27295002 C T PTK2B Missense_Mutation p.P506S 0.46 tolerated(0.06) benign(0.007) TCGA-D9-A148-06 8 57228744 57228744 G A SDR16C5 Missense_Mutation p.L55F 0.39 tolerated(0.1) probably_damaging(0.984) TCGA-D9-A148-06 8 57228829 57228829 C T SDR16C5 Missense_Mutation p.M26I 0.39 tolerated(0.26) benign(0.001) TCGA-D9-A148-06 8 61504414 61504414 T C RAB2A Intron 0.35 TCGA-D9-A148-06 8 68995569 68995569 C T PREX2 Missense_Mutation p.S658L 0.43 deleterious(0.03) benign(0.001) TCGA-D9-A148-06 9 116857517 116857517 C T KIF12 Missense_Mutation p.G193R 0.72 deleterious(0.01) benign(0.434) TCGA-D9-A148-06 9 133747600 133747600 G A ABL1 Missense_Mutation p.G322R 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A148-06 9 137778365 137778365 G A FCN2 Missense_Mutation p.E217K 0.75 deleterious(0) benign(0.389) TCGA-D9-A148-06 9 14146714 14146714 C - NFIB Frame_Shift_Del p.S300Ifs*17 0.26 TCGA-D9-A148-06 9 32633448 32633448 C T TAF1L Missense_Mutation p.M710I 0.46 tolerated(0.47) benign(0.006) TCGA-D9-A148-06 9 33442339 33442339 G A AQP3 Missense_Mutation p.L224F 0.59 tolerated(0.05) probably_damaging(0.987) TCGA-D9-A148-06 9 35061054 35061054 G A VCP Silent p.A439A 0.24 TCGA-D9-A148-06 9 35061055 35061055 G A VCP Missense_Mutation p.A439V 0.23 tolerated(0.13) benign(0.123) TCGA-D9-A148-06 9 36233983 36233983 G A GNE Nonsense_Mutation p.R337* 0.53 TCGA-D9-A148-06 9 4826983 4826983 C T RCL1 Missense_Mutation p.P112S 0.48 deleterious(0.03) benign(0.362) TCGA-D9-A148-06 9 6013286 6013286 G A RANBP6 Silent p.L774L 0.20 TCGA-D9-A148-06 9 72723222 72723222 C T MAMDC2 Missense_Mutation p.R82C 0.79 deleterious(0) probably_damaging(0.991) TCGA-D9-A148-06 9 77407629 77407629 C T TRPM6 Missense_Mutation p.G817S 0.64 tolerated(0.7) benign(0) TCGA-D9-A148-06 9 77455061 77455062 TG - TRPM6 Frame_Shift_Del p.S141Cfs*13 0.32 TCGA-D9-A148-06 X 114357343 114357343 G A LRCH2 Missense_Mutation p.H694Y 0.80 deleterious(0) probably_damaging(0.998) TCGA-D9-A148-06 X 134292130 134292130 C T CT55 Silent p.T177T 0.71 TCGA-D9-A148-06 X 135427956 135427956 C T GPR112 Silent p.S697S 0.93 TCGA-D9-A148-06 X 139866304 139866304 C T CDR1 Silent p.R76R 0.76 TCGA-D9-A148-06 X 24521592 24521592 A G PDK3 Missense_Mutation p.N157D 0.67 deleterious(0) benign(0.126) TCGA-D9-A148-06 X 3241141 3241141 C T MXRA5 Missense_Mutation p.S862N 0.91 tolerated(0.5) benign(0.002) TCGA-D9-A148-06 X 41000634 41000634 C T USP9X Nonsense_Mutation p.R371* 0.67 TCGA-D9-A148-06 X 41204721 41204721 C T DDX3X Missense_Mutation p.S412F 0.78 deleterious(0) probably_damaging(0.922) TCGA-D9-A148-06 X 51234589 51234589 C T NUDT11 3'UTR 0.76 TCGA-D9-A148-06 X 51638164 51638164 G A MAGED1 Missense_Mutation p.E77K 0.83 deleterious_low_confidence(0) unknown(0) TCGA-D9-A148-06 X 55650514 55650514 G A FOXR2 Missense_Mutation p.E124K 0.92 tolerated(0.1) benign(0.045) TCGA-D9-A149-06 10 103989059 103989059 C T ELOVL3 3'UTR 0.58 TCGA-D9-A149-06 10 106152112 106152112 C T CCDC147 Missense_Mutation p.S496L 0.41 deleterious(0.01) possibly_damaging(0.509) TCGA-D9-A149-06 10 127760116 127760116 G A ADAM12 Missense_Mutation p.S421F 0.40 deleterious(0.03) possibly_damaging(0.463) TCGA-D9-A149-06 10 24874255 24874255 G A ARHGAP21 Nonsense_Mutation p.R1655* 0.10 TCGA-D9-A149-06 10 28420578 28420578 C T MPP7 Missense_Mutation p.D120N 0.56 tolerated(0.12) benign(0.128) TCGA-D9-A149-06 10 37433940 37433940 G A ANKRD30A Missense_Mutation p.E415K 0.15 tolerated(0.21) possibly_damaging(0.636) TCGA-D9-A149-06 10 52610476 52610476 T G A1CF Missense_Mutation p.K24N 0.19 tolerated(0.5) benign(0) TCGA-D9-A149-06 10 55591154 55591154 C T PCDH15 Missense_Mutation p.G1375R 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 10 55973787 55973787 C T PCDH15 Missense_Mutation p.R336Q 0.34 tolerated(0.3) benign(0.007) TCGA-D9-A149-06 10 74916361 74916361 G A ECD Missense_Mutation p.P126S 0.34 deleterious(0) probably_damaging(0.998) TCGA-D9-A149-06 10 7745421 7745421 C T ITIH2 Silent p.F8F 0.19 TCGA-D9-A149-06 10 89472847 89472847 G A PAPSS2 Missense_Mutation p.G54E 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 10 90986655 90986655 T A LIPA Missense_Mutation p.I179L 0.43 deleterious(0.03) benign(0.054) TCGA-D9-A149-06 10 94220977 94220977 T A IDE Missense_Mutation p.T932S 0.18 tolerated(0.16) benign(0.036) TCGA-D9-A149-06 10 96602710 96602710 G A CYP2C19 Missense_Mutation p.D360N 0.42 tolerated(0.22) possibly_damaging(0.491) TCGA-D9-A149-06 10 96798747 96798747 C T CYP2C8 Missense_Mutation p.E400K 0.44 deleterious(0.02) possibly_damaging(0.884) TCGA-D9-A149-06 11 105782607 105782607 G A GRIA4 Intron 0.42 TCGA-D9-A149-06 11 1094763 1094763 C T MUC2 Missense_Mutation p.P1951S 0.42 unknown(0) TCGA-D9-A149-06 11 113283545 113283545 C T DRD2 Missense_Mutation p.E291K 0.19 tolerated(0.43) benign(0.219) TCGA-D9-A149-06 11 123476185 123476185 C T GRAMD1B Missense_Mutation p.S298L 0.21 tolerated(0.08) benign(0.036) TCGA-D9-A149-06 11 124294282 124294282 C G OR8B4 Missense_Mutation p.M162I 0.67 tolerated_low_confidence(0.09) benign(0.007) TCGA-D9-A149-06 11 19247016 19247016 G A E2F8 Missense_Mutation p.P725S 0.20 tolerated(0.78) benign(0.063) TCGA-D9-A149-06 11 35453864 35453864 G A PAMR1 3'UTR 0.24 TCGA-D9-A149-06 11 397006 397006 G A PKP3 Missense_Mutation p.G169R 0.18 tolerated(0.36) benign(0.209) TCGA-D9-A149-06 11 48267238 48267238 G A OR4X2 Missense_Mutation p.G195R 0.35 deleterious(0) probably_damaging(0.939) TCGA-D9-A149-06 11 5462628 5462628 G A OR51I1 Silent p.I39I 0.19 TCGA-D9-A149-06 11 57369545 57369545 C G SERPING1 Missense_Mutation p.I196M 0.27 deleterious(0.02) possibly_damaging(0.723) TCGA-D9-A149-06 11 57995730 57995730 G A OR10Q1 Silent p.V206V 0.19 TCGA-D9-A149-06 11 61113373 61113373 G A DAK Silent p.K510K 0.38 TCGA-D9-A149-06 11 62284753 62284753 G A AHNAK Silent p.I5712I 0.37 TCGA-D9-A149-06 11 62291166 62291166 G A AHNAK Missense_Mutation p.P3575S 0.35 probably_damaging(0.999) TCGA-D9-A149-06 11 62294090 62294090 G A AHNAK Missense_Mutation p.S2600F 0.28 possibly_damaging(0.891) TCGA-D9-A149-06 11 62416686 62416686 G A INTS5 Missense_Mutation p.P289L 0.48 deleterious(0) probably_damaging(0.951) TCGA-D9-A149-06 11 66436634 66436634 C T RBM4B Missense_Mutation p.G181S 0.27 deleterious(0.05) possibly_damaging(0.761) TCGA-D9-A149-06 11 67223182 67223182 C T CABP4 Silent p.S96S 0.19 TCGA-D9-A149-06 11 70336347 70336347 G A SHANK2 Intron 0.38 TCGA-D9-A149-06 11 82922398 82922398 G A ANKRD42 Missense_Mutation p.R143Q 0.44 tolerated(0.12) probably_damaging(0.999) TCGA-D9-A149-06 11 92087287 92087287 C T FAT3 Missense_Mutation p.S670L 0.34 probably_damaging(0.946) TCGA-D9-A149-06 11 9225804 9225804 G A DENND5A Missense_Mutation p.H118Y 0.26 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 11 99941237 99941237 G A CNTN5 Missense_Mutation p.G415E 0.35 deleterious(0) probably_damaging(0.992) TCGA-D9-A149-06 12 10865878 10865878 G A YBX3 Missense_Mutation p.R169C 0.19 deleterious(0.01) benign(0.013) TCGA-D9-A149-06 12 111311717 111311717 C T CCDC63 Silent p.P147P 0.37 TCGA-D9-A149-06 12 112481497 112481497 G A NAA25 Missense_Mutation p.R728C 0.17 deleterious(0.03) possibly_damaging(0.794) TCGA-D9-A149-06 12 113386841 113386841 C T OAS3 Missense_Mutation p.P402L 0.16 tolerated(0.37) benign(0.002) TCGA-D9-A149-06 12 118650786 118650786 C T TAOK3 Missense_Mutation p.R251K 0.27 tolerated(0.11) benign(0.014) TCGA-D9-A149-06 12 120595818 120595818 G A GCN1L1 Silent p.S974S 0.30 TCGA-D9-A149-06 12 49445809 49445809 G A KMT2D Missense_Mutation p.P553S 0.35 unknown(0) TCGA-D9-A149-06 12 56397658 56397658 C T SUOX Missense_Mutation p.P162L 0.37 tolerated(0.2) benign(0.005) TCGA-D9-A149-06 12 57660609 57660609 G A R3HDM2 Missense_Mutation p.S665F 0.43 deleterious(0) probably_damaging(0.928) TCGA-D9-A149-06 12 69784152 69784152 T C YEATS4 3'UTR 0.46 TCGA-D9-A149-06 12 7063977 7063977 T C PTPN6 Silent p.H112H 0.37 TCGA-D9-A149-06 12 7479638 7479638 G A ACSM4 Missense_Mutation p.E535K 0.32 deleterious(0) possibly_damaging(0.506) TCGA-D9-A149-06 12 7640276 7640276 G A CD163 Intron 0.17 TCGA-D9-A149-06 12 85518179 85518179 C T LRRIQ1 Nonsense_Mutation p.Q1297* 0.31 TCGA-D9-A149-06 12 97043713 97043713 G A C12orf55 Missense_Mutation p.E1579K 0.35 tolerated(0.39) benign(0.031) TCGA-D9-A149-06 12 97137663 97137663 G A C12orf55 Missense_Mutation p.R2511Q 0.08 tolerated(0.42) benign(0.003) TCGA-D9-A149-06 13 113999219 113999219 G T GRTP1 Missense_Mutation p.S174Y 0.53 deleterious(0) probably_damaging(0.971) TCGA-D9-A149-06 13 98658579 98658579 G A IPO5 Missense_Mutation p.G583S 0.42 deleterious(0.01) probably_damaging(1) TCGA-D9-A149-06 14 100576066 100576066 C T EVL Intron 0.80 TCGA-D9-A149-06 14 105693012 105693012 G A BRF1 Missense_Mutation p.P292S 0.28 deleterious(0) probably_damaging(0.999) TCGA-D9-A149-06 14 105693013 105693013 G A BRF1 Silent p.P291P 0.27 TCGA-D9-A149-06 14 21861911 21861911 G A CHD8 Nonsense_Mutation p.Q2015* 0.54 TCGA-D9-A149-06 14 22521085 22521085 G A TRAV21 Missense_Mutation p.E36K 0.21 tolerated(0.19) benign(0.172) TCGA-D9-A149-06 14 22671127 22671127 G A TRAV26-2 Silent p.V64V 0.22 TCGA-D9-A149-06 14 23311622 23311622 C T MMP14 Silent p.I128I 0.55 TCGA-D9-A149-06 14 23893208 23893208 C T MYH7 Missense_Mutation p.E944K 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-D9-A149-06 14 50085802 50085802 G A RPL36AL Silent p.T7T 0.14 TCGA-D9-A149-06 14 53150624 53150624 A G ERO1L Missense_Mutation p.V39A 0.12 deleterious(0) possibly_damaging(0.709) TCGA-D9-A149-06 14 61789030 61789030 G A PRKCH Missense_Mutation p.E71K 0.46 tolerated(0.47) possibly_damaging(0.735) TCGA-D9-A149-06 14 65007511 65007511 C T HSPA2 5'UTR 0.50 TCGA-D9-A149-06 14 65252634 65252634 G A SPTB Silent p.S1199S 0.16 TCGA-D9-A149-06 14 65252635 65252635 G A SPTB Missense_Mutation p.S1199F 0.15 deleterious(0) possibly_damaging(0.904) TCGA-D9-A149-06 14 77579932 77579932 G T CIPC Silent p.L157L 0.38 TCGA-D9-A149-06 15 22866942 22866942 T A TUBGCP5 Missense_Mutation p.I820N 0.10 deleterious(0.02) possibly_damaging(0.61) TCGA-D9-A149-06 15 28386959 28386959 T G HERC2 Missense_Mutation p.S3912R 0.15 benign(0.006) TCGA-D9-A149-06 15 28900554 28900554 C T HERC2P9 RNA 0.19 TCGA-D9-A149-06 15 33359256 33359257 AA T FMN1 Frame_Shift_Del p.F277Tfs*7 0.36 TCGA-D9-A149-06 15 34153323 34153323 A G RYR3 Silent p.T4803T 0.56 TCGA-D9-A149-06 15 51519994 51519994 G A CYP19A1 Nonsense_Mutation p.R145* 0.68 TCGA-D9-A149-06 15 66263027 66263027 C T MEGF11 Missense_Mutation p.G255R 0.70 deleterious(0) probably_damaging(0.998) TCGA-D9-A149-06 15 66727455 66727455 G T MAP2K1 Missense_Mutation p.K57N 0.61 deleterious(0) probably_damaging(0.994) TCGA-D9-A149-06 15 75310803 75310803 C T SCAMP5 Missense_Mutation p.S147L 0.18 tolerated(0.08) benign(0.014) TCGA-D9-A149-06 15 78889060 78889060 C T CHRNA3 Nonsense_Mutation p.W468* 0.71 TCGA-D9-A149-06 15 81625167 81625167 G A TMC3 Missense_Mutation p.L966F 0.15 deleterious_low_confidence(0) benign(0.167) TCGA-D9-A149-06 15 86283477 86283477 C T AKAP13 Missense_Mutation p.L2532F 0.72 deleterious(0) probably_damaging(0.999) TCGA-D9-A149-06 15 87089299 87089299 G A AGBL1 Missense_Mutation p.E872K 0.14 deleterious(0) probably_damaging(0.942) TCGA-D9-A149-06 15 90138635 90138635 C T TICRR Missense_Mutation p.R565C 0.11 deleterious(0.03) benign(0.249) TCGA-D9-A149-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.32 tolerated(0.08) benign(0.009) TCGA-D9-A149-06 16 20946803 20946803 C T DNAH3 Nonsense_Mutation p.W3955* 0.21 TCGA-D9-A149-06 16 24817563 24817563 A G TNRC6A Missense_Mutation p.R1430G 0.28 deleterious(0) probably_damaging(0.997) TCGA-D9-A149-06 16 28878039 28878039 C T SH2B1 Silent p.T208T 0.35 TCGA-D9-A149-06 16 31425822 31425822 C T ITGAD Silent p.L683L 0.32 TCGA-D9-A149-06 16 55732385 55732385 G A SLC6A2 Missense_Mutation p.G465E 0.59 deleterious(0) probably_damaging(0.999) TCGA-D9-A149-06 16 61858917 61858917 C T CDH8 Silent p.Q278Q 0.38 TCGA-D9-A149-06 17 18195956 18195956 A T TOP3A Intron 0.33 TCGA-D9-A149-06 17 33521362 33521362 G A SLC35G3 5'UTR 0.24 TCGA-D9-A149-06 17 34263770 34263770 C T LYZL6 Silent p.G122G 0.37 TCGA-D9-A149-06 17 51900848 51900848 G A KIF2B Missense_Mutation p.E152K 0.38 deleterious(0.02) possibly_damaging(0.521) TCGA-D9-A149-06 17 5461774 5461774 C T NLRP1 Missense_Mutation p.D748N 0.33 tolerated(0.15) benign(0.387) TCGA-D9-A149-06 17 58329766 58329766 G A USP32 Missense_Mutation p.P371L 0.38 tolerated(0.08) probably_damaging(0.992) TCGA-D9-A149-06 17 61987583 61987583 G A CSHL1 Missense_Mutation p.S137L 0.44 tolerated(0.19) probably_damaging(0.989) TCGA-D9-A149-06 17 66917522 66917522 C T ABCA8 Splice_Site p.X538_splice 0.33 TCGA-D9-A149-06 17 73517849 73517849 C T TSEN54 Silent p.S229S 0.38 TCGA-D9-A149-06 17 73559526 73559526 C T LLGL2 Missense_Mutation p.R270C 0.30 deleterious(0.04) possibly_damaging(0.69) TCGA-D9-A149-06 17 7496150 7496150 C T FXR2 Missense_Mutation p.V531I 0.38 deleterious(0.01) benign(0.138) TCGA-D9-A149-06 17 7496151 7496151 C T FXR2 Silent p.P530P 0.36 TCGA-D9-A149-06 18 13645128 13645128 C A LDLRAD4 Silent p.I131I 0.17 TCGA-D9-A149-06 18 19244067 19244067 G A ABHD3 Intron 0.44 TCGA-D9-A149-06 18 19244068 19244068 G A ABHD3 Intron 0.44 TCGA-D9-A149-06 18 30950152 30950152 C T CCDC178 Silent p.G70G 0.44 TCGA-D9-A149-06 18 55996240 55996240 G A NEDD4L Missense_Mutation p.E232K 0.33 tolerated(0.21) benign(0.001) TCGA-D9-A149-06 18 56376661 56376661 C T MALT1 Missense_Mutation p.T234I 0.32 tolerated(0.12) benign(0.004) TCGA-D9-A149-06 18 56985686 56985686 G A CPLX4 Silent p.F3F 0.45 TCGA-D9-A149-06 18 7231222 7231222 C A LRRC30 Missense_Mutation p.P29Q 0.49 tolerated(0.69) benign(0.002) TCGA-D9-A149-06 19 11728610 11728610 C T ZNF627 Missense_Mutation p.S431F 0.27 tolerated(0.7) possibly_damaging(0.768) TCGA-D9-A149-06 19 12429881 12429881 G A ZNF563 Missense_Mutation p.H320Y 0.24 tolerated(1) probably_damaging(0.979) TCGA-D9-A149-06 19 13136080 13136080 C T NFIX Silent p.F91F 0.37 TCGA-D9-A149-06 19 13397745 13397745 G A CACNA1A Missense_Mutation p.P1042L 0.39 probably_damaging(0.958) TCGA-D9-A149-06 19 15073094 15073094 C T SLC1A6 Missense_Mutation p.E219K 0.28 tolerated(0.54) possibly_damaging(0.457) TCGA-D9-A149-06 19 15198755 15198755 G A OR1I1 Silent p.R293R 0.27 TCGA-D9-A149-06 19 17119350 17119350 A C CPAMD8 Missense_Mutation p.M222R 0.34 deleterious(0) possibly_damaging(0.817) TCGA-D9-A149-06 19 17476311 17476311 C T PLVAP Silent p.A321A 0.44 TCGA-D9-A149-06 19 1997393 1997393 C T BTBD2 Silent p.T159T 0.35 TCGA-D9-A149-06 19 326549 326549 G A MIER2 Silent p.S181S 0.34 TCGA-D9-A149-06 19 3600066 3600066 G A TBXA2R Silent p.A189A 0.25 TCGA-D9-A149-06 19 3746033 3746033 C T TJP3 Missense_Mutation p.P664L 0.40 deleterious(0.02) probably_damaging(0.944) TCGA-D9-A149-06 19 39023320 39023320 C T RYR1 Silent p.L3735L 0.22 TCGA-D9-A149-06 19 45924637 45924637 G A ERCC1 Silent p.F40F 0.45 TCGA-D9-A149-06 19 49206536 49206536 G A FUT2 Missense_Mutation p.R108K 0.40 tolerated(0.32) benign(0.047) TCGA-D9-A149-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.22 deleterious(0) probably_damaging(0.918) TCGA-D9-A149-06 19 7964028 7964028 G A LRRC8E Silent p.L207L 0.14 TCGA-D9-A149-06 19 9204819 9204819 C T OR1M1 Missense_Mutation p.A300V 0.20 deleterious(0.01) benign(0.309) TCGA-D9-A149-06 19 9578233 9578233 C T ZNF560 Missense_Mutation p.E464K 0.19 tolerated(0.6) benign(0) TCGA-D9-A149-06 1 109812152 109812152 C T CELSR2 Missense_Mutation p.R2307C 0.33 tolerated(0.09) possibly_damaging(0.786) TCGA-D9-A149-06 1 110085718 110085718 C T GPR61 Missense_Mutation p.P25L 0.47 tolerated(0.39) benign(0.017) TCGA-D9-A149-06 1 114442652 114442652 G A AP4B1 Silent p.L330L 0.36 TCGA-D9-A149-06 1 118584660 118584660 C T SPAG17 Nonsense_Mutation p.W940* 0.38 TCGA-D9-A149-06 1 147094242 147094242 T A BCL9 Missense_Mutation p.Y1025N 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-D9-A149-06 1 152327138 152327138 C T FLG2 Missense_Mutation p.G1042R 0.32 unknown(0) TCGA-D9-A149-06 1 158323758 158323758 C T CD1E 5'UTR 0.39 TCGA-D9-A149-06 1 16356500 16356500 C T CLCNKA Silent p.V446V 0.59 TCGA-D9-A149-06 1 172100389 172100389 C G DNM3 Silent p.V540V 0.23 TCGA-D9-A149-06 1 202544310 202544310 G A PPP1R12B Intron 0.38 TCGA-D9-A149-06 1 204438517 204438517 G A PIK3C2B Silent p.V138V 0.32 TCGA-D9-A149-06 1 207640158 207640158 T G CR2 Missense_Mutation p.F116V 0.21 tolerated(0.1) benign(0.267) TCGA-D9-A149-06 1 215848794 215848794 G T USH2A Silent p.A4153A 0.30 TCGA-D9-A149-06 1 231830537 231830537 C T DISC1 Missense_Mutation p.R345W 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-D9-A149-06 1 23235526 23235526 C T EPHB2 Silent p.I789I 0.39 TCGA-D9-A149-06 1 237868530 237868530 G A RYR2 Missense_Mutation p.G3156E 0.14 probably_damaging(1) TCGA-D9-A149-06 1 23885406 23885406 C T ID3 Intron 0.62 TCGA-D9-A149-06 1 247587438 247587438 G A NLRP3 Silent p.G231G 0.28 TCGA-D9-A149-06 1 247978436 247978436 A G OR14A16 Missense_Mutation p.L199P 0.39 tolerated(0.19) possibly_damaging(0.808) TCGA-D9-A149-06 1 247978742 247978742 G A OR14A16 Missense_Mutation p.S97F 0.26 deleterious(0.04) possibly_damaging(0.56) TCGA-D9-A149-06 1 248366886 248366886 G A OR2M3 Missense_Mutation p.E173K 0.37 tolerated(0.2) benign(0.12) TCGA-D9-A149-06 1 26526463 26526463 C T CATSPER4 Silent p.L301L 0.36 TCGA-D9-A149-06 1 33354742 33354742 C T HPCA Silent p.D81D 0.38 TCGA-D9-A149-06 1 34191090 34191090 C T CSMD2 Missense_Mutation p.R812Q 0.38 tolerated(0.06) benign(0.294) TCGA-D9-A149-06 1 39788666 39788666 C T MACF1 Silent p.L1413L 0.33 TCGA-D9-A149-06 1 46034238 46034238 C T AKR1A1 Missense_Mutation p.P212S 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-D9-A149-06 1 66064414 66064414 G A LEPR Silent p.Q307Q 0.29 TCGA-D9-A149-06 1 70503805 70503805 A T LRRC7 Silent p.P728P 0.28 TCGA-D9-A149-06 1 94342622 94342622 T G DNTTIP2 Missense_Mutation p.K290T 0.28 tolerated(0.27) benign(0.025) TCGA-D9-A149-06 20 17495447 17495447 G A BFSP1 Silent p.A151A 0.19 TCGA-D9-A149-06 20 34091513 34091513 C T CEP250 Silent p.L1772L 0.34 TCGA-D9-A149-06 20 3728871 3728871 T C HSPA12B Missense_Mutation p.L228P 0.27 deleterious(0) possibly_damaging(0.852) TCGA-D9-A149-06 20 42196349 42196349 G A SGK2 Missense_Mutation p.G104E 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 20 61143446 61143446 C T C20orf166 5'Flank 0.37 TCGA-D9-A149-06 20 61143447 61143447 C T C20orf166 5'Flank 0.36 TCGA-D9-A149-06 20 61386080 61386080 C T NTSR1 Missense_Mutation p.S253L 0.21 deleterious(0.03) possibly_damaging(0.892) TCGA-D9-A149-06 20 61512461 61512461 G A DIDO1 Missense_Mutation p.S1616F 0.40 benign(0.109) TCGA-D9-A149-06 20 61542327 61542327 A G DIDO1 Missense_Mutation p.L213P 0.29 benign(0.006) TCGA-D9-A149-06 20 62121960 62121960 C T EEF1A2 Missense_Mutation p.E301K 0.41 tolerated_low_confidence(0.06) benign(0.013) TCGA-D9-A149-06 20 62326551 62326551 T C RTEL1 Missense_Mutation p.L1183P 0.25 tolerated_low_confidence(0.17) benign(0.012) TCGA-D9-A149-06 20 858863 858863 G A ANGPT4 Silent p.G387G 0.30 TCGA-D9-A149-06 21 28296553 28296553 C T ADAMTS5 Missense_Mutation p.G871E 0.37 tolerated(1) benign(0.005) TCGA-D9-A149-06 21 41452084 41452084 C T DSCAM Missense_Mutation p.G1472E 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A149-06 21 45877008 45877008 A G LRRC3 Missense_Mutation p.K161E 0.25 tolerated(0.64) benign(0.002) TCGA-D9-A149-06 22 21159290 21159290 G A PI4KA Silent p.L444L 0.43 TCGA-D9-A149-06 22 24226868 24226868 C T SLC2A11 Silent p.F448F 0.34 TCGA-D9-A149-06 22 50582642 50582642 C T MOV10L1 Silent p.V825V 0.33 TCGA-D9-A149-06 2 108487716 108487716 A T RGPD4 Nonsense_Mutation p.K1086* 0.24 TCGA-D9-A149-06 2 128081558 128081558 G A MAP3K2 Missense_Mutation p.P253L 0.39 tolerated(0.12) benign(0.118) TCGA-D9-A149-06 2 130897892 130897892 G A CCDC74B Nonsense_Mutation p.Q246* 0.39 TCGA-D9-A149-06 2 145147101 145147101 G A ZEB2 Missense_Mutation p.H1188Y 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.628) TCGA-D9-A149-06 2 153399257 153399257 G A FMNL2 Missense_Mutation p.R69Q 0.20 possibly_damaging(0.596) TCGA-D9-A149-06 2 162719562 162719562 G A SLC4A10 Missense_Mutation p.M252I 0.18 tolerated(0.15) benign(0.048) TCGA-D9-A149-06 2 167262185 167262185 G A SCN7A Missense_Mutation p.H1652Y 0.37 tolerated(0.83) benign(0.167) TCGA-D9-A149-06 2 168103996 168103996 C T XIRP2 Missense_Mutation p.R2032C 0.22 probably_damaging(0.972) TCGA-D9-A149-06 2 179597846 179597846 G A TTN Nonsense_Mutation p.R5353* 0.42 TCGA-D9-A149-06 2 185800682 185800682 C T ZNF804A Missense_Mutation p.P187S 0.20 tolerated(0.23) benign(0.002) TCGA-D9-A149-06 2 189868749 189868749 G A COL3A1 Silent p.K901K 0.86 TCGA-D9-A149-06 2 196619217 196619217 G A DNAH7 Missense_Mutation p.P3870S 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 2 203906494 203906494 C T NBEAL1 Missense_Mutation p.P20S 0.16 tolerated(0.14) probably_damaging(0.978) TCGA-D9-A149-06 2 207146584 207146584 G A ZDBF2 Missense_Mutation p.R4K 0.30 tolerated(0.23) benign(0.22) TCGA-D9-A149-06 2 207174275 207174275 C T ZDBF2 Nonsense_Mutation p.R1675* 0.52 TCGA-D9-A149-06 2 209113112 209113112 C A IDH1 Missense_Mutation p.R132L 0.40 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-D9-A149-06 2 220286118 220286118 C T DES Silent p.A360A 0.34 TCGA-D9-A149-06 2 228883978 228883978 C T SPHKAP Missense_Mutation p.G531E 0.24 tolerated(0.83) benign(0.029) TCGA-D9-A149-06 2 228884573 228884573 C T SPHKAP Missense_Mutation p.E333K 0.23 tolerated(0.11) benign(0.019) TCGA-D9-A149-06 2 241452226 241452226 G A ANKMY1 Missense_Mutation p.P624L 0.54 tolerated(0.74) benign(0.007) TCGA-D9-A149-06 2 29432682 29432682 C T ALK Missense_Mutation p.G1269E 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 2 37283665 37283665 G A HEATR5B Missense_Mutation p.P773S 0.22 deleterious(0.03) benign(0.403) TCGA-D9-A149-06 2 41615 41615 G A FAM110C Missense_Mutation p.S320F 0.36 deleterious_low_confidence(0.04) benign(0.114) TCGA-D9-A149-06 2 43968180 43968180 C T PLEKHH2 Silent p.S1073S 0.27 TCGA-D9-A149-06 2 61512070 61512070 C T USP34 Missense_Mutation p.G1591E 0.15 tolerated(0.59) benign(0) TCGA-D9-A149-06 2 69009419 69009419 G A ARHGAP25 Missense_Mutation p.E106K 0.24 deleterious(0) possibly_damaging(0.9) TCGA-D9-A149-06 2 74754932 74754932 G A AUP1 Missense_Mutation p.R258W 0.39 deleterious(0.03) possibly_damaging(0.728) TCGA-D9-A149-06 2 99251692 99251692 G A MGAT4A Silent p.F487F 0.25 TCGA-D9-A149-06 3 108677833 108677833 A C MORC1 Missense_Mutation p.N978K 0.41 tolerated_low_confidence(0.46) benign(0.001) TCGA-D9-A149-06 3 12393094 12393094 G A PPARG Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.019) TCGA-D9-A149-06 3 129302425 129302425 G A PLXND1 Silent p.A742A 0.17 TCGA-D9-A149-06 3 134670598 134670598 G A EPHB1 Missense_Mutation p.R170Q 0.32 tolerated(0.13) benign(0.15) TCGA-D9-A149-06 3 136196211 136196211 C T STAG1 Missense_Mutation p.G316R 0.34 deleterious(0) probably_damaging(0.992) TCGA-D9-A149-06 3 138724576 138724576 G A PRR23A Missense_Mutation p.L179F 0.29 tolerated(0.05) probably_damaging(0.972) TCGA-D9-A149-06 3 151163919 151163919 G A IGSF10 Missense_Mutation p.P1284S 0.35 tolerated(0.68) benign(0.025) TCGA-D9-A149-06 3 167245717 167245717 G A WDR49 Missense_Mutation p.S480F 0.33 tolerated(0.13) possibly_damaging(0.736) TCGA-D9-A149-06 3 167246922 167246922 G A WDR49 Missense_Mutation p.S423L 0.47 deleterious(0.01) benign(0.124) TCGA-D9-A149-06 3 170218993 170218993 G A SLC7A14 Missense_Mutation p.A149V 0.46 deleterious(0) benign(0.35) TCGA-D9-A149-06 3 17202654 17202654 G A TBC1D5 Missense_Mutation p.S752F 0.28 deleterious_low_confidence(0.02) benign(0.139) TCGA-D9-A149-06 3 179605528 179605528 G A PEX5L Silent p.S81S 0.28 TCGA-D9-A149-06 3 179605529 179605529 G A PEX5L Missense_Mutation p.S81F 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A149-06 3 195481174 195481174 C T MUC4 Missense_Mutation p.E5080K 0.26 benign(0.182) TCGA-D9-A149-06 3 38748782 38748782 G A SCN10A Silent p.I1458I 0.30 TCGA-D9-A149-06 3 41266125 41266125 C T CTNNB1 Missense_Mutation p.T41I 0.32 deleterious(0) probably_damaging(0.931) TCGA-D9-A149-06 3 43122216 43122216 G A POMGNT2 Silent p.L236L 0.40 TCGA-D9-A149-06 3 46620758 46620758 G A TDGF1 Missense_Mutation p.G42E 0.33 tolerated(0.1) benign(0.139) TCGA-D9-A149-06 3 51679118 51679118 T G RAD54L2 Missense_Mutation p.D843E 0.23 deleterious(0) probably_damaging(0.986) TCGA-D9-A149-06 3 52812490 52812490 C T ITIH1 Silent p.I91I 0.29 TCGA-D9-A149-06 3 52812491 52812491 C T ITIH1 Missense_Mutation p.P92S 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 3 53694300 53694300 C T CACNA1D Missense_Mutation p.P255L 0.29 deleterious(0) probably_damaging(0.999) TCGA-D9-A149-06 3 53694301 53694301 C T CACNA1D Silent p.P255P 0.31 TCGA-D9-A149-06 3 56605266 56605266 C T CCDC66 Missense_Mutation p.P291L 0.34 tolerated(0.6) benign(0.216) TCGA-D9-A149-06 3 69245538 69245538 G A FRMD4B Missense_Mutation p.P368S 0.39 tolerated(0.53) benign(0.005) TCGA-D9-A149-06 3 7188320 7188320 G A GRM7 Missense_Mutation p.G234D 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 3 86010738 86010738 G A CADM2 Missense_Mutation p.R297Q 0.25 tolerated(0.29) benign(0.245) TCGA-D9-A149-06 3 89448692 89448692 C T EPHA3 Intron 0.24 TCGA-D9-A149-06 4 184241107 184241107 C T CLDN22 Missense_Mutation p.G89R 0.41 deleterious(0) probably_damaging(0.976) TCGA-D9-A149-06 4 1843299 1843299 G A LETM1 Silent p.S123S 0.21 TCGA-D9-A149-06 4 185698108 185698108 A G ACSL1 Silent p.A169A 0.38 TCGA-D9-A149-06 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.24 TCGA-D9-A149-06 4 77660429 77660429 C T SHROOM3 Missense_Mutation p.S368F 0.37 deleterious(0) possibly_damaging(0.754) TCGA-D9-A149-06 4 78808385 78808385 G A MRPL1 Silent p.E166E 0.25 TCGA-D9-A149-06 4 78808386 78808386 G A MRPL1 Missense_Mutation p.V167I 0.25 tolerated(0.83) benign(0.003) TCGA-D9-A149-06 4 88052237 88052237 G A AFF1 Silent p.T989T 0.44 TCGA-D9-A149-06 5 140480554 140480554 G A PCDHB3 Silent p.Q107Q 0.43 TCGA-D9-A149-06 5 140515317 140515317 C G PCDHB5 Missense_Mutation p.P101A 0.12 deleterious_low_confidence(0) benign(0.158) TCGA-D9-A149-06 5 140588661 140588661 C T PCDHB12 Missense_Mutation p.S61L 0.29 deleterious_low_confidence(0.05) benign(0.014) TCGA-D9-A149-06 5 140769433 140769433 T C PCDHGB4 Missense_Mutation p.V661A 0.14 tolerated(0.37) benign(0.19) TCGA-D9-A149-06 5 147653930 147653930 T A SPINK13 Missense_Mutation p.F31I 0.32 tolerated(0.4) benign(0.001) TCGA-D9-A149-06 5 172362241 172362241 C T ERGIC1 Silent p.F231F 0.24 TCGA-D9-A149-06 5 176517623 176517623 C T FGFR4 Silent p.I108I 0.29 TCGA-D9-A149-06 5 180377475 180377475 C T BTNL8 Silent p.I478I 0.70 TCGA-D9-A149-06 5 180377476 180377476 C T BTNL8 Missense_Mutation p.P479S 0.70 tolerated(0.07) benign(0.002) TCGA-D9-A149-06 5 35084616 35084616 C T PRLR Missense_Mutation p.G110E 0.34 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 5 6748698 6748698 C T PAPD7 Silent p.A277A 0.28 TCGA-D9-A149-06 5 70805913 70805913 C T BDP1 Silent p.G998G 0.35 TCGA-D9-A149-06 5 76248828 76248828 C T CRHBP 5'UTR 0.45 TCGA-D9-A149-06 5 76248829 76248829 C T CRHBP 5'UTR 0.45 TCGA-D9-A149-06 5 79616184 79616184 C T SPZ1 Silent p.L50L 0.34 TCGA-D9-A149-06 5 837498 837498 C T ZDHHC11 Missense_Mutation p.M294I 0.33 tolerated(0.52) benign(0.002) TCGA-D9-A149-06 5 90074263 90074263 C T GPR98 Missense_Mutation p.P4229L 0.25 possibly_damaging(0.908) TCGA-D9-A149-06 6 110300536 110300536 C T GPR6 Missense_Mutation p.P74L 0.26 deleterious(0.04) probably_damaging(0.988) TCGA-D9-A149-06 6 117203570 117203570 T C RFX6 Missense_Mutation p.L182P 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A149-06 6 17764934 17764934 G T KIF13A Missense_Mutation p.L1609M 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A149-06 6 1961196 1961196 G A GMDS Missense_Mutation p.S117F 0.73 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A149-06 6 24448238 24448238 C T GPLD1 Nonsense_Mutation p.W515* 0.10 TCGA-D9-A149-06 6 28872083 28872083 C A TRIM27 Missense_Mutation p.V436L 0.78 deleterious(0.01) possibly_damaging(0.661) TCGA-D9-A149-06 6 31604379 31604379 C T PRRC2A Silent p.A1976A 0.15 TCGA-D9-A149-06 6 31847774 31847774 C T EHMT2 3'UTR 0.12 TCGA-D9-A149-06 6 32168976 32168976 C T NOTCH4 Missense_Mutation p.G1353R 0.06 tolerated(0.32) benign(0.016) TCGA-D9-A149-06 6 36169209 36169209 C T BRPF3 Silent p.L370L 0.76 TCGA-D9-A149-06 6 38834641 38834641 C T DNAH8 Missense_Mutation p.L2011F 0.84 probably_damaging(1) TCGA-D9-A149-06 6 42996894 42996894 G A RRP36 Silent p.E236E 0.78 TCGA-D9-A149-06 6 43181465 43181465 C T CUL9 Missense_Mutation p.H1835Y 0.12 tolerated(0.07) benign(0.002) TCGA-D9-A149-06 6 56391321 56391321 G A DST Silent p.S3366S 0.12 TCGA-D9-A149-06 6 71235824 71235824 C T FAM135A Missense_Mutation p.P1013S 0.70 tolerated(0.68) benign(0.002) TCGA-D9-A149-06 6 74111671 74111671 A G DDX43 Missense_Mutation p.I176V 0.70 tolerated(0.34) benign(0.034) TCGA-D9-A149-06 7 100179429 100179429 C T LRCH4 Missense_Mutation p.R190Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-D9-A149-06 7 100551777 100551777 C T MUC3A Silent p.I176I 0.21 TCGA-D9-A149-06 7 107708485 107708485 C T LAMB4 Missense_Mutation p.D808N 0.23 deleterious(0.02) benign(0.001) TCGA-D9-A149-06 7 117227832 117227832 G A CFTR Missense_Mutation p.G542R 0.40 deleterious(0) probably_damaging(0.926) TCGA-D9-A149-06 7 120780953 120780953 C T CPED1 Missense_Mutation p.P591L 0.22 deleterious(0.01) possibly_damaging(0.767) TCGA-D9-A149-06 7 120935554 120935554 C T CPED1 Missense_Mutation p.H977Y 0.25 tolerated(0.61) benign(0.014) TCGA-D9-A149-06 7 131815133 131815133 G A PLXNA4 3'UTR 0.47 TCGA-D9-A149-06 7 143092274 143092274 T A EPHA1 Silent p.R695R 0.44 TCGA-D9-A149-06 7 157931072 157931072 C T PTPRN2 Missense_Mutation p.R349Q 0.24 tolerated(0.91) benign(0.001) TCGA-D9-A149-06 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.25 tolerated(0.11) benign(0.16) TCGA-D9-A149-06 7 44048394 44048394 G A SPDYE1 3'UTR 0.19 TCGA-D9-A149-06 7 81381436 81381436 C T HGF Missense_Mutation p.V209I 0.16 tolerated(0.19) benign(0.011) TCGA-D9-A149-06 7 81388076 81388076 G A HGF Missense_Mutation p.P100L 0.38 tolerated(0.08) possibly_damaging(0.809) TCGA-D9-A149-06 7 8791422 8791422 G A NXPH1 3'UTR 0.43 TCGA-D9-A149-06 7 88423705 88423705 G A C7orf62 Silent p.Y184Y 0.27 TCGA-D9-A149-06 7 98581893 98581893 C T TRRAP Missense_Mutation p.P3071L 0.29 probably_damaging(1) TCGA-D9-A149-06 8 103563904 103563904 C T ODF1 5'UTR 0.36 TCGA-D9-A149-06 8 110980770 110980770 G A KCNV1 Silent p.L350L 0.31 TCGA-D9-A149-06 8 121535639 121535639 T G MTBP 3'UTR 0.38 TCGA-D9-A149-06 8 125076649 125076649 C T FER1L6 Silent p.P1130P 0.36 TCGA-D9-A149-06 8 144351607 144351607 C T GLI4 Missense_Mutation p.P14L 0.31 tolerated(0.35) benign(0.002) TCGA-D9-A149-06 8 145065397 145065397 C T GRINA Silent p.S2S 0.31 TCGA-D9-A149-06 8 18257508 18257508 G A NAT2 Intron 0.25 TCGA-D9-A149-06 8 21861515 21861515 A G XPO7 Silent p.R1048R 0.26 TCGA-D9-A149-06 8 21938900 21938900 A T DMTN Missense_Mutation p.M382L 0.39 deleterious(0) probably_damaging(0.96) TCGA-D9-A149-06 8 3000081 3000081 G A CSMD1 Silent p.L2049L 0.41 TCGA-D9-A149-06 8 41543692 41543692 G A ANK1 Silent p.I1497I 0.46 TCGA-D9-A149-06 8 80553689 80553689 C T STMN2 Silent p.I64I 0.32 TCGA-D9-A149-06 8 80553691 80553691 C T STMN2 Missense_Mutation p.S65L 0.35 deleterious(0.04) benign(0.268) TCGA-D9-A149-06 9 117827167 117827167 C A TNC Silent p.V1082V 0.21 TCGA-D9-A149-06 9 123673690 123673690 G A TRAF1 Silent p.F269F 0.57 TCGA-D9-A149-06 9 128268599 128268599 G A MAPKAP1 Silent p.V352V 0.18 TCGA-D9-A149-06 9 137717717 137717717 G A COL5A1 Silent p.S1678S 0.26 TCGA-D9-A149-06 9 38571981 38571981 C G ANKRD18A 3'UTR 0.33 TCGA-D9-A149-06 9 71549904 71549904 G A PIP5K1B Missense_Mutation p.D434N 0.19 tolerated(0.1) benign(0.007) TCGA-D9-A149-06 X 100615596 100615596 C T BTK Missense_Mutation p.E246K 0.56 tolerated(0.83) benign(0.008) TCGA-D9-A149-06 X 107783035 107783035 G A COL4A5 Silent p.K47K 0.47 TCGA-D9-A149-06 X 117043528 117043528 C T KLHL13 Missense_Mutation p.E371K 0.50 tolerated(0.8) benign(0.006) TCGA-D9-A149-06 X 120182576 120182576 G A GLUD2 Silent p.K346K 0.22 TCGA-D9-A149-06 X 127185028 127185028 C T ACTRT1 3'UTR 0.67 TCGA-D9-A149-06 X 2772069 2772069 C T GYG2 Silent p.I97I 0.56 TCGA-D9-A149-06 X 70469396 70469396 G A ZMYM3 Missense_Mutation p.T462I 0.50 tolerated(0.12) benign(0.068) TCGA-D9-A1JW-06 10 101567916 101567916 C T ABCC2 Missense_Mutation p.S582F 0.21 deleterious(0) probably_damaging(0.994) TCGA-D9-A1JW-06 10 102249886 102249886 G A SEC31B Silent p.G948G 0.23 TCGA-D9-A1JW-06 10 103898705 103898705 G T PPRC1 Missense_Mutation p.G187W 0.25 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 10 104596869 104596869 C T CYP17A1 Missense_Mutation p.E84K 0.18 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 10 106974211 106974211 T C SORCS3 Missense_Mutation p.I796T 0.28 deleterious(0) benign(0.366) TCGA-D9-A1JW-06 10 107015513 107015513 G A SORCS3 Silent p.L1097L 0.37 TCGA-D9-A1JW-06 10 115336971 115336971 C T HABP2 Missense_Mutation p.P132S 0.33 deleterious(0) probably_damaging(0.968) TCGA-D9-A1JW-06 10 115961172 115961172 C T TDRD1 Missense_Mutation p.S178L 0.20 deleterious(0.02) possibly_damaging(0.776) TCGA-D9-A1JW-06 10 117849350 117849350 T A GFRA1 Missense_Mutation p.T367S 0.35 tolerated(0.35) benign(0.006) TCGA-D9-A1JW-06 10 124249077 124249077 T C HTRA1 Missense_Mutation p.Y238H 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-D9-A1JW-06 10 124266380 124266380 C T HTRA1 Silent p.I317I 0.35 TCGA-D9-A1JW-06 10 127693492 127693492 G A FANK1 Silent p.V193V 0.25 TCGA-D9-A1JW-06 10 129903931 129903931 C T MKI67 Missense_Mutation p.G2058E 0.27 tolerated(0.1) probably_damaging(0.999) TCGA-D9-A1JW-06 10 129903932 129903932 C T MKI67 Missense_Mutation p.G2058R 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-D9-A1JW-06 10 15296731 15296731 C T FAM171A1 Missense_Mutation p.G189E 0.23 deleterious(0.02) possibly_damaging(0.888) TCGA-D9-A1JW-06 10 15697376 15697376 G T ITGA8 Silent p.V326V 0.07 TCGA-D9-A1JW-06 10 21120162 21120162 A C NEBL Missense_Mutation p.I545S 0.30 deleterious(0) benign(0.328) TCGA-D9-A1JW-06 10 26377279 26377279 G A MYO3A Missense_Mutation p.G503R 0.28 deleterious(0) probably_damaging(0.99) TCGA-D9-A1JW-06 10 31137869 31137869 G A ZNF438 Missense_Mutation p.P489S 0.29 tolerated(0.15) benign(0.063) TCGA-D9-A1JW-06 10 31137870 31137870 G A ZNF438 Silent p.S488S 0.29 TCGA-D9-A1JW-06 10 33481215 33481215 G A NRP1 Missense_Mutation p.H686Y 0.24 tolerated(0.19) probably_damaging(0.985) TCGA-D9-A1JW-06 10 35928513 35928513 G A FZD8 Silent p.S615S 0.27 TCGA-D9-A1JW-06 10 38126603 38126603 G A ZNF248 Silent p.I60I 0.40 TCGA-D9-A1JW-06 10 43882742 43882742 G A HNRNPF Silent p.P197P 0.26 TCGA-D9-A1JW-06 10 44052335 44052335 G A ZNF239 Missense_Mutation p.T398I 0.21 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 10 47086923 47086923 C T NPY4R Missense_Mutation p.S47F 0.08 tolerated(0.09) benign(0.006) TCGA-D9-A1JW-06 10 48382054 48382054 C T RBP3 Missense_Mutation p.G1199R 0.23 tolerated(0.14) probably_damaging(0.988) TCGA-D9-A1JW-06 10 48389030 48389030 G A RBP3 Silent p.I616I 0.23 TCGA-D9-A1JW-06 10 48390152 48390152 G A RBP3 Silent p.I242I 0.31 TCGA-D9-A1JW-06 10 48413875 48413875 G A GDF2 Silent p.S331S 0.26 TCGA-D9-A1JW-06 10 48416646 48416646 C T GDF2 Silent p.L16L 0.33 TCGA-D9-A1JW-06 10 4879766 4879766 C T AKR1E2 Missense_Mutation p.T192I 0.17 tolerated(0.1) probably_damaging(0.965) TCGA-D9-A1JW-06 10 50531128 50531128 C T C10orf71 Missense_Mutation p.P180S 0.25 deleterious(0.03) probably_damaging(1) TCGA-D9-A1JW-06 10 50532358 50532358 A C C10orf71 Missense_Mutation p.T590P 0.26 deleterious(0.04) possibly_damaging(0.877) TCGA-D9-A1JW-06 10 50916685 50916685 G A C10orf53 3'UTR 0.25 TCGA-D9-A1JW-06 10 54530513 54530513 C T MBL2 Missense_Mutation p.G74E 0.22 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 10 55569283 55569283 T G PCDH15 Missense_Mutation p.K443N 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-D9-A1JW-06 10 61819137 61819137 C T ANK3 Missense_Mutation p.R4216Q 0.26 probably_damaging(0.945) TCGA-D9-A1JW-06 10 61831012 61831012 C T ANK3 Silent p.E3209E 0.32 TCGA-D9-A1JW-06 10 64573153 64573153 G A EGR2 Silent p.R415R 0.41 TCGA-D9-A1JW-06 10 67829077 67829077 T G CTNNA3 Silent p.T716T 0.31 TCGA-D9-A1JW-06 10 68979533 68979533 A G CTNNA3 Silent p.C225C 0.36 TCGA-D9-A1JW-06 10 70863760 70863760 C T SRGN Nonsense_Mutation p.Q121* 0.23 TCGA-D9-A1JW-06 10 73377123 73377123 C T CDH23 Silent p.L369L 0.27 TCGA-D9-A1JW-06 10 74806745 74806745 G A P4HA1 Missense_Mutation p.R339C 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A1JW-06 10 75289602 75289602 G A USP54 Silent p.S632S 0.22 TCGA-D9-A1JW-06 10 75551178 75551178 C T ZSWIM8 Missense_Mutation p.H414Y 0.31 deleterious(0.03) probably_damaging(0.946) TCGA-D9-A1JW-06 10 81111303 81111303 C T PPIF Missense_Mutation p.P126S 0.21 tolerated_low_confidence(0.09) probably_damaging(0.937) TCGA-D9-A1JW-06 10 85973996 85973996 C T CDHR1 Silent p.V733V 0.29 TCGA-D9-A1JW-06 10 95276761 95276761 T C CEP55 Missense_Mutation p.V250A 0.26 tolerated(0.85) benign(0) TCGA-D9-A1JW-06 10 96313987 96313987 G A HELLS Missense_Mutation p.M86I 0.24 tolerated(0.24) benign(0.348) TCGA-D9-A1JW-06 10 96313988 96313988 G A HELLS Missense_Mutation p.E87K 0.23 tolerated(0.11) probably_damaging(0.987) TCGA-D9-A1JW-06 10 96602718 96602718 C T CYP2C19 Silent p.I362I 0.20 TCGA-D9-A1JW-06 10 96824697 96824697 A T CYP2C8 Missense_Mutation p.F168I 0.31 deleterious(0.04) benign(0.31) TCGA-D9-A1JW-06 10 97919527 97919527 C T ZNF518A RNA 0.18 TCGA-D9-A1JW-06 10 99375894 99375894 A T MORN4 3'UTR 0.33 TCGA-D9-A1JW-06 11 101828931 101828931 C T KIAA1377 Missense_Mutation p.S180L 0.29 tolerated(0.05) benign(0.176) TCGA-D9-A1JW-06 11 104900534 104900534 C T CASP1 Silent p.R240R 0.27 TCGA-D9-A1JW-06 11 108062855 108062855 A T NPAT Missense_Mutation p.S94T 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-D9-A1JW-06 11 10820827 10820827 G A EIF4G2 Silent p.H823H 0.16 TCGA-D9-A1JW-06 11 111749882 111749887 TTCTCT - FDXACB1 5'UTR 0.23 TCGA-D9-A1JW-06 11 112084579 112084579 G A BCO2 Missense_Mutation p.G443R 0.30 deleterious(0.01) benign(0.247) TCGA-D9-A1JW-06 11 115099882 115099882 G A CADM1 Silent p.H224H 0.35 TCGA-D9-A1JW-06 11 119149242 119149242 C A CBL Missense_Mutation p.P417H 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 11 123810592 123810592 C T OR4D5 Missense_Mutation p.P90L 0.44 deleterious(0) benign(0.001) TCGA-D9-A1JW-06 11 123900864 123900864 G A OR10G8 Missense_Mutation p.D179N 0.35 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JW-06 11 124189248 124189248 G A OR8D2 Silent p.I282I 0.37 TCGA-D9-A1JW-06 11 124792320 124792320 C T HEPACAM Silent p.R304R 0.30 TCGA-D9-A1JW-06 11 1263670 1263670 G A MUC5B Missense_Mutation p.G1854R 0.22 unknown(0) TCGA-D9-A1JW-06 11 130342957 130342957 C T ADAMTS15 Silent p.F698F 0.37 TCGA-D9-A1JW-06 11 1643088 1643088 C T KRTAP5-4 Missense_Mutation p.G79E 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-D9-A1JW-06 11 17428582 17428582 G A ABCC8 Silent p.S1005S 0.26 TCGA-D9-A1JW-06 11 19077861 19077861 G A MRGPRX2 Missense_Mutation p.T30I 0.33 tolerated(0.59) benign(0) TCGA-D9-A1JW-06 11 19246337 19246337 G A E2F8 Silent p.F824F 0.13 TCGA-D9-A1JW-06 11 26743307 26743307 G A SLC5A12 5'UTR 0.21 TCGA-D9-A1JW-06 11 32955554 32955554 C T QSER1 Missense_Mutation p.P788L 0.26 deleterious(0.01) benign(0.051) TCGA-D9-A1JW-06 11 32956278 32956278 T C QSER1 Silent p.G1029G 0.40 TCGA-D9-A1JW-06 11 33350174 33350174 G A HIPK3 Missense_Mutation p.D406N 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 11 33790446 33790446 G A FBXO3 Silent p.L103L 0.35 TCGA-D9-A1JW-06 11 40136712 40136712 G A LRRC4C Silent p.A377A 0.36 TCGA-D9-A1JW-06 11 40136877 40136877 C T LRRC4C Silent p.S322S 0.26 TCGA-D9-A1JW-06 11 43413392 43413392 C T TTC17 Missense_Mutation p.L185F 0.29 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 11 4703639 4703639 G A OR51E2 Silent p.F101F 0.17 TCGA-D9-A1JW-06 11 47701582 47701582 G A AGBL2 Silent p.S653S 0.21 TCGA-D9-A1JW-06 11 47837085 47837085 G A NUP160 Silent p.H544H 0.28 TCGA-D9-A1JW-06 11 4842629 4842629 C T OR51F2 Missense_Mutation p.S5F 0.19 deleterious_low_confidence(0.01) benign(0.29) TCGA-D9-A1JW-06 11 4936029 4936029 G A OR51G2 Missense_Mutation p.P289S 0.25 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JW-06 11 49598415 49598415 G A RP11-707M1.1 RNA 0.28 TCGA-D9-A1JW-06 11 5247936 5247936 C T HBB Silent p.K62K 0.22 TCGA-D9-A1JW-06 11 5537394 5537394 C A UBQLNL Missense_Mutation p.G93V 0.20 deleterious(0) probably_damaging(0.992) TCGA-D9-A1JW-06 11 55681905 55681905 C T OR5W2 Missense_Mutation p.D52N 0.20 tolerated(0.12) benign(0.064) TCGA-D9-A1JW-06 11 55703536 55703536 G A OR5I1 Missense_Mutation p.S114F 0.50 deleterious(0.03) probably_damaging(0.996) TCGA-D9-A1JW-06 11 56380060 56380060 C T OR5M1 Missense_Mutation p.G307R 0.25 tolerated(0.74) benign(0.002) TCGA-D9-A1JW-06 11 56950032 56950032 T C LRRC55 Missense_Mutation p.L222P 0.33 deleterious(0) probably_damaging(0.974) TCGA-D9-A1JW-06 11 57263631 57263631 A G SLC43A1 Missense_Mutation p.Y189H 0.30 deleterious(0) probably_damaging(0.988) TCGA-D9-A1JW-06 11 57310133 57310133 G A SMTNL1 Silent p.G24G 0.17 TCGA-D9-A1JW-06 11 58170217 58170217 G A OR5B3 Silent p.T222T 0.42 TCGA-D9-A1JW-06 11 5842474 5842474 G A OR52N2 Silent p.Q303Q 0.20 TCGA-D9-A1JW-06 11 58722355 58722355 G A GLYATL1 Missense_Mutation p.R131K 0.33 tolerated(0.42) benign(0.002) TCGA-D9-A1JW-06 11 59282709 59282709 G A OR4D9 Silent p.G108G 0.20 TCGA-D9-A1JW-06 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.28 TCGA-D9-A1JW-06 11 59368079 59368079 T A OSBP Missense_Mutation p.T401S 0.29 tolerated(1) benign(0.093) TCGA-D9-A1JW-06 11 59620433 59620433 G A TCN1 3'UTR 0.26 TCGA-D9-A1JW-06 11 60711223 60711223 C A SLC15A3 Missense_Mutation p.V312L 0.11 tolerated(0.12) benign(0.151) TCGA-D9-A1JW-06 11 61563517 61563517 C T FEN1 Silent p.I228I 0.31 TCGA-D9-A1JW-06 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.19 TCGA-D9-A1JW-06 11 63233660 63233660 G A HRASLS5 Silent p.I223I 0.25 TCGA-D9-A1JW-06 11 64120576 64120576 G A CCDC88B Missense_Mutation p.G1184D 0.23 tolerated(0.06) probably_damaging(1) TCGA-D9-A1JW-06 11 65088540 65088540 C T CDC42EP2 Silent p.F57F 0.28 TCGA-D9-A1JW-06 11 65617684 65617684 G AA SNX32 Frame_Shift_Ins p.E106Kfs*27 0.29 TCGA-D9-A1JW-06 11 65780821 65780821 C T CST6 Missense_Mutation p.P134S 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 11 66321524 66321524 G A CTD-3074O7.2 3'Flank 0.29 TCGA-D9-A1JW-06 11 66563829 66563829 C T C11orf80 Silent p.H237H 0.19 TCGA-D9-A1JW-06 11 67260440 67260440 C T PITPNM1 Missense_Mutation p.G1146S 0.30 deleterious(0) possibly_damaging(0.8) TCGA-D9-A1JW-06 11 67933356 67933356 G A SUV420H1 Intron 0.19 TCGA-D9-A1JW-06 11 68529012 68529012 G A CPT1A Silent p.F673F 0.21 TCGA-D9-A1JW-06 11 6913605 6913605 G A OR2D2 Silent p.L43L 0.67 TCGA-D9-A1JW-06 11 70185379 70185379 C T PPFIA1 Silent p.G558G 0.26 TCGA-D9-A1JW-06 11 70275245 70275245 G A CTTN Silent p.E335E 0.17 TCGA-D9-A1JW-06 11 74329644 74329644 C T POLD3 Missense_Mutation p.S152F 0.27 tolerated(0.09) benign(0.024) TCGA-D9-A1JW-06 11 76885844 76885844 G A MYO7A Missense_Mutation p.G660R 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 11 7981464 7981464 G A NLRP10 Silent p.F565F 0.30 TCGA-D9-A1JW-06 11 8008884 8008884 C T EIF3F 5'UTR 0.32 TCGA-D9-A1JW-06 11 8060574 8060574 C T TUB Missense_Mutation p.R52W 0.22 deleterious_low_confidence(0) benign(0.09) TCGA-D9-A1JW-06 11 85435165 85435165 C T SYTL2 Missense_Mutation p.E779K 0.32 deleterious(0.01) benign(0.121) TCGA-D9-A1JW-06 11 85610023 85610023 C T CCDC83 Silent p.L213L 0.29 TCGA-D9-A1JW-06 11 9168652 9168652 C A DENND5A Nonsense_Mutation p.E928* 0.33 TCGA-D9-A1JW-06 11 93815599 93815599 G A HEPHL1 Missense_Mutation p.E578K 0.39 deleterious(0) probably_damaging(0.994) TCGA-D9-A1JW-06 12 100594592 100594592 G A ACTR6 5'UTR 0.26 TCGA-D9-A1JW-06 12 100813746 100813746 G A SLC17A8 Missense_Mutation p.E527K 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-D9-A1JW-06 12 101381320 101381320 C T ANO4 Silent p.I167I 0.25 TCGA-D9-A1JW-06 12 101581199 101581199 G A SLC5A8 Missense_Mutation p.P310S 0.19 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 12 104046436 104046436 T G STAB2 Missense_Mutation p.F454V 0.23 tolerated(0.12) possibly_damaging(0.837) TCGA-D9-A1JW-06 12 10588420 10588420 C T KLRC2 Missense_Mutation p.D56N 0.38 tolerated(0.05) benign(0.248) TCGA-D9-A1JW-06 12 107113834 107113834 T C RFX4 Splice_Site p.X420_splice 0.29 TCGA-D9-A1JW-06 12 108686637 108686637 C T CMKLR1 Missense_Mutation p.E35K 0.27 tolerated(0.24) benign(0.004) TCGA-D9-A1JW-06 12 108986010 108986010 G A TMEM119 Silent p.S50S 0.29 TCGA-D9-A1JW-06 12 108986011 108986011 G A TMEM119 Missense_Mutation p.S50F 0.25 tolerated(0.18) probably_damaging(0.912) TCGA-D9-A1JW-06 12 109046188 109046188 G A CORO1C Silent p.D287D 0.33 TCGA-D9-A1JW-06 12 109889381 109889381 G A KCTD10 3'UTR 0.26 TCGA-D9-A1JW-06 12 111758289 111758289 C T CUX2 Missense_Mutation p.R826C 0.17 deleterious(0) possibly_damaging(0.899) TCGA-D9-A1JW-06 12 113386755 113386755 T G OAS3 Missense_Mutation p.N373K 0.32 tolerated(0.36) benign(0.006) TCGA-D9-A1JW-06 12 11421008 11421008 C G PRB3 Missense_Mutation p.G59R 0.06 deleterious(0.04) unknown(0) TCGA-D9-A1JW-06 12 114793308 114793308 G A TBX5 3'UTR 0.20 TCGA-D9-A1JW-06 12 11546281 11546281 C T PRB2 Missense_Mutation p.G244E 0.17 deleterious(0.01) unknown(0) TCGA-D9-A1JW-06 12 11546442 11546442 C T PRB2 Silent p.Q190Q 0.12 TCGA-D9-A1JW-06 12 117768489 117768489 G A NOS1 Missense_Mutation p.P129L 0.28 deleterious_low_confidence(0.04) benign(0.016) TCGA-D9-A1JW-06 12 117768500 117768500 G A NOS1 Silent p.P125P 0.22 TCGA-D9-A1JW-06 12 121416806 121416806 G A HNF1A Missense_Mutation p.E79K 0.26 tolerated(0.07) benign(0.116) TCGA-D9-A1JW-06 12 121712110 121712110 G A CAMKK2 Silent p.L74L 0.29 TCGA-D9-A1JW-06 12 130184903 130184903 C T TMEM132D Silent p.L140L 0.21 TCGA-D9-A1JW-06 12 131622767 131622767 C T GPR133 Missense_Mutation p.S841L 0.39 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D9-A1JW-06 12 13238026 13238026 G A GSG1 Missense_Mutation p.R277W 0.30 deleterious(0) possibly_damaging(0.764) TCGA-D9-A1JW-06 12 133430057 133430057 G A CHFR Silent p.A456A 0.33 TCGA-D9-A1JW-06 12 133779306 133779306 C T ZNF268 Missense_Mutation p.S345L 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-D9-A1JW-06 12 13715643 13715643 C T GRIN2B 3'UTR 0.31 TCGA-D9-A1JW-06 12 15103650 15103650 G A ARHGDIB 5'UTR 0.24 TCGA-D9-A1JW-06 12 15262429 15262429 C T RERG Missense_Mutation p.G72E 0.24 tolerated(0.79) probably_damaging(0.962) TCGA-D9-A1JW-06 12 16753761 16753761 C T LMO3 Missense_Mutation p.G12S 0.26 tolerated(0.46) benign(0.053) TCGA-D9-A1JW-06 12 18793380 18793380 T G PIK3C2G Silent p.S1359S 0.33 TCGA-D9-A1JW-06 12 20868168 20868168 A T SLCO1C1 Missense_Mutation p.I209F 0.35 deleterious(0.02) possibly_damaging(0.477) TCGA-D9-A1JW-06 12 21028306 21028306 G A SLCO1B3 Missense_Mutation p.E289K 0.17 tolerated(0.18) benign(0.119) TCGA-D9-A1JW-06 12 21051369 21051369 G A SLCO1B3 Splice_Site p.X561_splice 0.16 TCGA-D9-A1JW-06 12 2797764 2797764 C T CACNA1C Missense_Mutation p.S2027F 0.24 deleterious_low_confidence(0.03) probably_damaging(0.964) TCGA-D9-A1JW-06 12 29617568 29617568 G A OVCH1 Missense_Mutation p.A666V 0.23 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 12 40012795 40012795 T C ABCD2 Missense_Mutation p.Q208R 0.29 deleterious(0) probably_damaging(0.982) TCGA-D9-A1JW-06 12 43769915 43769915 C T ADAMTS20 Missense_Mutation p.E1753K 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 12 44782223 44782223 C T TMEM117 Missense_Mutation p.S438F 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D9-A1JW-06 12 4705788 4705788 C T DYRK4 Silent p.I151I 0.32 TCGA-D9-A1JW-06 12 4708873 4708873 G A DYRK4 Missense_Mutation p.E234K 0.23 deleterious(0) probably_damaging(0.985) TCGA-D9-A1JW-06 12 47178369 47178369 C T SLC38A4 Missense_Mutation p.G150E 0.30 deleterious(0.02) probably_damaging(1) TCGA-D9-A1JW-06 12 47471738 47471753 TAACCAGACTTCCATT - AMIGO2 Frame_Shift_Del p.N345* 0.19 TCGA-D9-A1JW-06 12 4919931 4919931 G A KCNA6 Missense_Mutation p.E242K 0.24 tolerated(0.87) benign(0.005) TCGA-D9-A1JW-06 12 49428389 49428389 G A KMT2D Silent p.N3472N 0.21 TCGA-D9-A1JW-06 12 49444009 49444009 T G KMT2D Missense_Mutation p.D1121A 0.17 possibly_damaging(0.741) TCGA-D9-A1JW-06 12 50294991 50294991 C T FAIM2 Missense_Mutation p.E45K 0.33 tolerated(0.67) benign(0.005) TCGA-D9-A1JW-06 12 51385436 51385436 G A SLC11A2 Missense_Mutation p.P485L 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 12 51748148 51748148 G A GALNT6 3'UTR 0.31 TCGA-D9-A1JW-06 12 52281922 52281922 C T ANKRD33 5'UTR 0.27 TCGA-D9-A1JW-06 12 53088463 53088463 C T KRT77 Missense_Mutation p.E343K 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A1JW-06 12 53096950 53096950 C T KRT77 Missense_Mutation p.G90E 0.22 deleterious(0) benign(0.092) TCGA-D9-A1JW-06 12 53817652 53817652 G A AMHR2 5'UTR 0.38 TCGA-D9-A1JW-06 12 539842 539842 C T CCDC77 Nonsense_Mutation p.Q175* 0.26 TCGA-D9-A1JW-06 12 55523577 55523577 C T OR9K2 Missense_Mutation p.H9Y 0.30 tolerated_low_confidence(0.55) benign(0) TCGA-D9-A1JW-06 12 55759556 55759556 G A OR6C75 Missense_Mutation p.R221Q 0.24 tolerated_low_confidence(0.07) benign(0.007) TCGA-D9-A1JW-06 12 55945195 55945195 G A OR6C4 Missense_Mutation p.R62Q 0.17 tolerated_low_confidence(0.12) benign(0.002) TCGA-D9-A1JW-06 12 55945196 55945196 G A OR6C4 Silent p.R62R 0.17 TCGA-D9-A1JW-06 12 56428444 56428444 C T IKZF4 Missense_Mutation p.H363Y 0.27 deleterious(0) possibly_damaging(0.761) TCGA-D9-A1JW-06 12 56428585 56428585 C T IKZF4 Missense_Mutation p.P410S 0.31 tolerated(0.19) benign(0.023) TCGA-D9-A1JW-06 12 5672572 5672572 G T ANO2 Missense_Mutation p.P964T 0.40 tolerated(0.37) unknown(0) TCGA-D9-A1JW-06 12 56745206 56745206 G A STAT2 Missense_Mutation p.H271Y 0.25 deleterious(0.01) possibly_damaging(0.904) TCGA-D9-A1JW-06 12 57110203 57110203 G A NACA Intron 0.26 TCGA-D9-A1JW-06 12 58022919 58022919 G A B4GALNT1 Silent p.S241S 0.27 TCGA-D9-A1JW-06 12 59274408 59274408 G A LRIG3 Missense_Mutation p.H586Y 0.28 deleterious(0.03) possibly_damaging(0.528) TCGA-D9-A1JW-06 12 6669901 6669901 C T NOP2 Missense_Mutation p.G500E 0.10 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 12 6747518 6747518 C T ACRBP Missense_Mutation p.G521D 0.30 tolerated(0.64) benign(0.001) TCGA-D9-A1JW-06 12 69260720 69260720 T G CPM Missense_Mutation p.N299T 0.42 deleterious(0.04) benign(0.039) TCGA-D9-A1JW-06 12 70928675 70928675 G A PTPRB Silent p.L2048L 0.26 TCGA-D9-A1JW-06 12 7290645 7290645 C T CLSTN3 Silent p.F435F 0.20 TCGA-D9-A1JW-06 12 73050711 73050711 G A TRHDE Missense_Mutation p.G952R 0.28 deleterious(0) probably_damaging(0.995) TCGA-D9-A1JW-06 12 7585262 7585262 G A CD163L1 Silent p.F172F 0.35 TCGA-D9-A1JW-06 12 7633849 7633849 G A CD163 Missense_Mutation p.S1084F 0.31 tolerated(0.78) benign(0.008) TCGA-D9-A1JW-06 12 7640647 7640647 G A CD163 Missense_Mutation p.P486L 0.43 deleterious(0.04) probably_damaging(0.933) TCGA-D9-A1JW-06 12 7970503 7970503 G A SLC2A14 Missense_Mutation p.P423L 0.25 deleterious(0) possibly_damaging(0.887) TCGA-D9-A1JW-06 12 7970504 7970504 G A SLC2A14 Missense_Mutation p.P423S 0.24 deleterious(0.04) probably_damaging(0.977) TCGA-D9-A1JW-06 12 81101549 81101549 G A MYF6 Silent p.G17G 0.14 TCGA-D9-A1JW-06 12 81110842 81110842 G A MYF5 5'UTR 0.31 TCGA-D9-A1JW-06 12 85450628 85450628 G A LRRIQ1 Missense_Mutation p.G686D 0.25 tolerated(1) benign(0) TCGA-D9-A1JW-06 12 85517940 85517940 G A LRRIQ1 Missense_Mutation p.R1217Q 0.24 tolerated(0.29) benign(0.006) TCGA-D9-A1JW-06 12 8995919 8995919 G A A2ML1 Missense_Mutation p.D480N 0.40 deleterious(0.02) possibly_damaging(0.581) TCGA-D9-A1JW-06 12 95928001 95928001 C T USP44 Missense_Mutation p.G11E 0.22 tolerated(0.49) benign(0.027) TCGA-D9-A1JW-06 12 96266060 96266060 C T CCDC38 Missense_Mutation p.R486K 0.23 tolerated(0.73) benign(0.029) TCGA-D9-A1JW-06 13 110855923 110855923 G A COL4A1 Missense_Mutation p.P330L 0.26 unknown(0) TCGA-D9-A1JW-06 13 111558407 111558407 G A ANKRD10 Missense_Mutation p.A143V 0.25 tolerated(0.43) possibly_damaging(0.561) TCGA-D9-A1JW-06 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.16 tolerated(0.63) benign(0.006) TCGA-D9-A1JW-06 13 23907979 23907979 G A SACS Missense_Mutation p.P3346S 0.15 benign(0.029) TCGA-D9-A1JW-06 13 25262581 25262581 T C ATP12A Missense_Mutation p.L118P 0.04 deleterious(0) probably_damaging(0.997) TCGA-D9-A1JW-06 13 25451191 25451191 T G RNF17 Missense_Mutation p.L1547R 0.28 tolerated(0.21) possibly_damaging(0.567) TCGA-D9-A1JW-06 13 33628071 33628071 A G KL Silent p.K329K 0.22 TCGA-D9-A1JW-06 13 36700097 36700097 G A DCLK1 Missense_Mutation p.R60C 0.40 deleterious(0.02) unknown(0) TCGA-D9-A1JW-06 13 37427614 37427614 C T SMAD9 Missense_Mutation p.G401D 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 13 39264353 39264353 G A FREM2 Missense_Mutation p.E958K 0.24 deleterious(0) probably_damaging(0.959) TCGA-D9-A1JW-06 13 39338470 39338470 C T FREM2 Missense_Mutation p.R1765C 0.28 deleterious(0.01) benign(0.009) TCGA-D9-A1JW-06 13 46357632 46357632 C T SIAH3 Silent p.G232G 0.21 TCGA-D9-A1JW-06 13 52518245 52518245 C T ATP7B Silent p.E1081E 0.24 TCGA-D9-A1JW-06 13 52990024 52990024 G A VPS36 Missense_Mutation p.R368C 0.27 deleterious(0) probably_damaging(0.994) TCGA-D9-A1JW-06 13 70293603 70293603 C T KLHL1 Missense_Mutation p.G638E 0.26 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 13 76382275 76382275 G A LMO7 Missense_Mutation p.R386K 0.54 tolerated(1) benign(0.001) TCGA-D9-A1JW-06 13 84455751 84455751 G A SLITRK1 5'UTR 0.21 TCGA-D9-A1JW-06 13 95726485 95726485 G A ABCC4 Missense_Mutation p.S967F 0.19 tolerated(0.19) probably_damaging(0.948) TCGA-D9-A1JW-06 14 100374016 100374016 C T EML1 Silent p.D369D 0.30 TCGA-D9-A1JW-06 14 102829213 102829213 G A CINP 5'Flank 0.23 TCGA-D9-A1JW-06 14 103573827 103573827 A T EXOC3L4 Nonsense_Mutation p.K550* 0.20 TCGA-D9-A1JW-06 14 103969316 103969316 C T MARK3 Missense_Mutation p.P672S 0.27 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 14 104460697 104460697 A G TDRD9 Silent p.E403E 0.20 TCGA-D9-A1JW-06 14 106053529 106053529 C T IGHA2 Silent p.Q256Q 0.15 TCGA-D9-A1JW-06 14 106110952 106110952 G A IGHG2 Missense_Mutation p.S59F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 14 106173760 106173760 C T IGHA1 Silent p.Q269Q 0.14 TCGA-D9-A1JW-06 14 106208519 106208519 G A IGHG1 Silent p.P127P 0.24 TCGA-D9-A1JW-06 14 106236004 106236004 G A IGHG3 Silent p.S267S 0.26 TCGA-D9-A1JW-06 14 20248616 20248616 C T OR4M1 Silent p.I45I 0.17 TCGA-D9-A1JW-06 14 20249248 20249248 C T OR4M1 Missense_Mutation p.S256F 0.13 deleterious(0) possibly_damaging(0.905) TCGA-D9-A1JW-06 14 20344669 20344669 G A OR4K2 Missense_Mutation p.M81I 0.19 deleterious(0.01) possibly_damaging(0.593) TCGA-D9-A1JW-06 14 20345185 20345185 A G OR4K2 Silent p.P253P 0.24 TCGA-D9-A1JW-06 14 20404491 20404491 G A OR4K1 Silent p.L222L 0.19 TCGA-D9-A1JW-06 14 20483185 20483185 G T OR4K14 Missense_Mutation p.H56Q 0.21 deleterious(0.02) benign(0.072) TCGA-D9-A1JW-06 14 20854287 20854287 A - TEP1 Frame_Shift_Del p.Y977Mfs*28 0.17 TCGA-D9-A1JW-06 14 21359841 21359841 G A RNASE3 Intron 0.22 TCGA-D9-A1JW-06 14 21793478 21793478 G A RPGRIP1 Missense_Mutation p.R768Q 0.21 tolerated(0.25) benign(0.028) TCGA-D9-A1JW-06 14 21794027 21794027 G A RPGRIP1 Nonsense_Mutation p.W802* 0.27 TCGA-D9-A1JW-06 14 22134166 22134166 G A OR4E2 Silent p.R290R 0.26 TCGA-D9-A1JW-06 14 22192510 22192510 G A TRAV3 Silent p.L95L 0.44 TCGA-D9-A1JW-06 14 24808773 24808773 G A RIPK3 Silent p.S17S 0.27 TCGA-D9-A1JW-06 14 31204901 31204901 C T SCFD1 3'UTR 0.17 TCGA-D9-A1JW-06 14 31852855 31852855 G A HEATR5A Missense_Mutation p.R197C 0.27 deleterious(0.02) benign(0.099) TCGA-D9-A1JW-06 14 37203758 37203758 C T SLC25A21 Missense_Mutation p.G75E 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 14 51352531 51352531 G A ABHD12B Missense_Mutation p.D194N 0.23 deleterious(0) probably_damaging(0.945) TCGA-D9-A1JW-06 14 52781928 52781928 A G PTGER2 Missense_Mutation p.N221S 0.26 tolerated(0.51) benign(0.038) TCGA-D9-A1JW-06 14 52899126 52899126 T A TXNDC16 Missense_Mutation p.I792F 0.27 tolerated(0.48) benign(0.044) TCGA-D9-A1JW-06 14 60194302 60194302 G A RTN1 Missense_Mutation p.S367L 0.23 deleterious(0) benign(0.049) TCGA-D9-A1JW-06 14 62213824 62213824 C T HIF1A 3'UTR 0.23 TCGA-D9-A1JW-06 14 69262645 69262645 G T ZFP36L1 5'Flank 0.31 TCGA-D9-A1JW-06 14 69701576 69701576 C T EXD2 Nonsense_Mutation p.R293* 0.26 TCGA-D9-A1JW-06 14 70459163 70459163 G A SMOC1 Missense_Mutation p.E186K 0.22 deleterious(0.01) benign(0.409) TCGA-D9-A1JW-06 14 70634876 70634876 G A SLC8A3 Silent p.F88F 0.22 TCGA-D9-A1JW-06 14 70991342 70991342 G A ADAM20 Missense_Mutation p.P95S 0.39 deleterious(0) probably_damaging(0.996) TCGA-D9-A1JW-06 14 72125078 72125078 C T SIPA1L1 Silent p.Y674Y 0.29 TCGA-D9-A1JW-06 14 74428024 74428024 C T COQ6 Missense_Mutation p.P347L 0.17 deleterious(0) probably_damaging(0.99) TCGA-D9-A1JW-06 14 74824603 74824603 G A VRTN Missense_Mutation p.E373K 0.28 tolerated(0.11) benign(0.188) TCGA-D9-A1JW-06 14 74825172 74825172 C T VRTN Silent p.V562V 0.27 TCGA-D9-A1JW-06 14 74969619 74969619 C A LTBP2 Missense_Mutation p.C1636F 0.23 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 14 77297635 77297635 C T C14orf166B Missense_Mutation p.R103W 0.19 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 14 77493062 77493062 G A IRF2BPL Silent p.S358S 0.29 TCGA-D9-A1JW-06 14 81862472 81862472 C T STON2 Missense_Mutation p.E47K 0.32 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D9-A1JW-06 14 91770241 91770241 C T CCDC88C Missense_Mutation p.E1147K 0.26 deleterious(0) probably_damaging(0.947) TCGA-D9-A1JW-06 14 92336611 92336611 G A FBLN5 Missense_Mutation p.S435F 0.24 deleterious(0) probably_damaging(0.997) TCGA-D9-A1JW-06 14 94674843 94674843 C T PPP4R4 Silent p.L78L 0.27 TCGA-D9-A1JW-06 14 94697011 94697011 C T PPP4R4 Missense_Mutation p.H128Y 0.30 tolerated(0.24) benign(0.007) TCGA-D9-A1JW-06 14 94756493 94756493 C T SERPINA10 Silent p.K146K 0.22 TCGA-D9-A1JW-06 14 95081240 95081240 G A SERPINA3 Silent p.T154T 0.25 TCGA-D9-A1JW-06 14 95081241 95081241 G A SERPINA3 Missense_Mutation p.E155K 0.25 tolerated(0.14) benign(0.27) TCGA-D9-A1JW-06 14 95111410 95111410 C T SERPINA13P RNA 0.19 TCGA-D9-A1JW-06 15 101718145 101718145 G A CHSY1 Silent p.S619S 0.22 TCGA-D9-A1JW-06 15 20495407 20495407 G A CHEK2P2 RNA 0.10 TCGA-D9-A1JW-06 15 23811087 23811087 G A MKRN3 Missense_Mutation p.R53K 0.21 tolerated(0.93) benign(0.004) TCGA-D9-A1JW-06 15 24922344 24922344 C T NPAP1 Missense_Mutation p.L444F 0.31 tolerated(0.7) possibly_damaging(0.449) TCGA-D9-A1JW-06 15 25488604 25488604 G A SNORD115-40 5'Flank 0.21 TCGA-D9-A1JW-06 15 34648236 34648236 G A NUTM1 Missense_Mutation p.G648E 0.25 tolerated(0.18) benign(0.055) TCGA-D9-A1JW-06 15 35530049 35530049 G A ANP32AP1 RNA 0.27 TCGA-D9-A1JW-06 15 38803888 38803888 T A RASGRP1 Missense_Mutation p.M295L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 15 40954394 40954394 G A CASC5 3'UTR 0.17 TCGA-D9-A1JW-06 15 41229024 41229024 G A DLL4 Silent p.L613L 0.34 TCGA-D9-A1JW-06 15 41611941 41611941 G A OIP5 Missense_Mutation p.P143S 0.24 tolerated(0.54) benign(0.023) TCGA-D9-A1JW-06 15 42147787 42147787 G A SPTBN5 Nonsense_Mutation p.Q3060* 0.37 TCGA-D9-A1JW-06 15 42159820 42159820 G A SPTBN5 Silent p.A2076A 0.25 TCGA-D9-A1JW-06 15 43314912 43314912 G A UBR1 Missense_Mutation p.H943Y 0.25 tolerated(1) benign(0.001) TCGA-D9-A1JW-06 15 52065922 52065922 C T TMOD2 Silent p.I99I 0.33 TCGA-D9-A1JW-06 15 52571166 52571166 C T MYO5C Missense_Mutation p.G118E 0.35 tolerated(0.17) probably_damaging(1) TCGA-D9-A1JW-06 15 55497898 55497898 G A RAB27A Missense_Mutation p.P158L 0.21 deleterious(0.04) probably_damaging(0.927) TCGA-D9-A1JW-06 15 58257932 58257932 C A ALDH1A2 Missense_Mutation p.D298Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 15 60715915 60715915 G A NARG2 Missense_Mutation p.S956F 0.36 deleterious(0) possibly_damaging(0.877) TCGA-D9-A1JW-06 15 64017698 64017698 T C HERC1 Missense_Mutation p.I1121V 0.31 benign(0) TCGA-D9-A1JW-06 15 65676527 65676527 G A IGDCC4 Silent p.A1191A 0.26 TCGA-D9-A1JW-06 15 65676528 65676528 G A IGDCC4 Missense_Mutation p.A1191V 0.27 deleterious_low_confidence(0.02) benign(0.146) TCGA-D9-A1JW-06 15 66025116 66025116 G A DENND4A Missense_Mutation p.P361S 0.19 tolerated(0.18) possibly_damaging(0.734) TCGA-D9-A1JW-06 15 71433837 71433837 G A THSD4 5'UTR 0.44 TCGA-D9-A1JW-06 15 75094689 75094689 C T CSK Silent p.V396V 0.27 TCGA-D9-A1JW-06 15 76071779 76071779 A T RP11-24M17.5 RNA 0.19 TCGA-D9-A1JW-06 15 76430211 76430211 C T C15orf27 Silent p.L68L 0.28 TCGA-D9-A1JW-06 15 79069868 79069868 A C ADAMTS7 Missense_Mutation p.V462G 0.27 deleterious(0) possibly_damaging(0.741) TCGA-D9-A1JW-06 15 85478734 85478734 G A SLC28A1 Silent p.R522R 0.31 TCGA-D9-A1JW-06 15 89384991 89384991 G A ACAN Missense_Mutation p.R217Q 0.24 deleterious(0) unknown(0) TCGA-D9-A1JW-06 15 92705993 92705993 C T SLCO3A1 Silent p.I587I 0.24 TCGA-D9-A1JW-06 16 1961565 1961565 G A HS3ST6 3'UTR 0.28 TCGA-D9-A1JW-06 16 20570715 20570715 C T ACSM2B Missense_Mutation p.E78K 0.21 deleterious(0) possibly_damaging(0.879) TCGA-D9-A1JW-06 16 20634766 20634766 G A ACSM1 3'UTR 0.37 TCGA-D9-A1JW-06 16 21716602 21716602 G A OTOA Missense_Mutation p.G365S 0.32 tolerated(0.55) benign(0.012) TCGA-D9-A1JW-06 16 223624 223624 C T HBA2 3'UTR 0.22 TCGA-D9-A1JW-06 16 2284180 2284180 C T E4F1 Missense_Mutation p.P462S 0.31 deleterious(0.05) possibly_damaging(0.474) TCGA-D9-A1JW-06 16 22926572 22926572 C T HS3ST2 Missense_Mutation p.P265S 0.28 deleterious(0) probably_damaging(0.982) TCGA-D9-A1JW-06 16 23382719 23382719 C T SCNN1B Missense_Mutation p.P327L 0.26 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 16 29999125 29999125 C T TAOK2 Missense_Mutation p.H1178Y 0.33 deleterious_low_confidence(0.02) benign(0.091) TCGA-D9-A1JW-06 16 30012247 30012247 C T INO80E Intron 0.22 TCGA-D9-A1JW-06 16 30364855 30364855 G A CD2BP2 Silent p.N214N 0.27 TCGA-D9-A1JW-06 16 30732570 30732570 C T SRCAP Missense_Mutation p.S1105F 0.24 unknown(0) TCGA-D9-A1JW-06 16 30958127 30958127 C T FBXL19 Silent p.S588S 0.25 TCGA-D9-A1JW-06 16 30995335 30995335 C T SETD1A Silent p.S1705S 0.37 TCGA-D9-A1JW-06 16 31072471 31072471 G A ZNF668 Missense_Mutation p.T616I 0.36 tolerated(0.29) probably_damaging(0.994) TCGA-D9-A1JW-06 16 4164632 4164632 G A ADCY9 Missense_Mutation p.S271L 0.17 tolerated(0.32) benign(0.001) TCGA-D9-A1JW-06 16 48117552 48117552 G A ABCC12 3'UTR 0.16 TCGA-D9-A1JW-06 16 48249135 48249135 C T ABCC11 Missense_Mutation p.E358K 0.19 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JW-06 16 51175386 51175386 C T SALL1 Silent p.Q249Q 0.31 TCGA-D9-A1JW-06 16 57718363 57718363 C T GPR97 Silent p.I408I 0.22 TCGA-D9-A1JW-06 16 57718364 57718364 C T GPR97 Missense_Mutation p.R409C 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-D9-A1JW-06 16 67168101 67168101 C T C16orf70 Nonsense_Mutation p.Q161* 0.28 TCGA-D9-A1JW-06 16 67197714 67197714 C A FBXL8 Silent p.L372L 0.23 TCGA-D9-A1JW-06 16 67221645 67221645 C T EXOC3L1 Missense_Mutation p.D175N 0.16 tolerated(0.1) benign(0.043) TCGA-D9-A1JW-06 16 67424844 67424844 G A TPPP3 Silent p.I57I 0.28 TCGA-D9-A1JW-06 16 67943579 67943579 C T PSKH1 Silent p.I309I 0.23 TCGA-D9-A1JW-06 16 68404909 68404909 G A SMPD3 Silent p.Y392Y 0.15 TCGA-D9-A1JW-06 16 68405628 68405628 C T SMPD3 Missense_Mutation p.E153K 0.19 deleterious(0.04) probably_damaging(0.953) TCGA-D9-A1JW-06 16 68598164 68598164 C T ZFP90 Missense_Mutation p.P492S 0.33 tolerated(0.14) benign(0.024) TCGA-D9-A1JW-06 16 68901015 68901015 C T TANGO6 Missense_Mutation p.R296W 0.32 deleterious(0.03) possibly_damaging(0.513) TCGA-D9-A1JW-06 16 70852320 70852320 C T HYDIN Silent p.S4861S 0.29 TCGA-D9-A1JW-06 16 70867977 70867977 G A HYDIN Missense_Mutation p.P4498S 0.13 probably_damaging(0.932) TCGA-D9-A1JW-06 16 70934932 70934932 T C HYDIN Missense_Mutation p.N3008S 0.14 benign(0.016) TCGA-D9-A1JW-06 16 70995865 70995865 G A HYDIN Nonsense_Mutation p.Q1989* 0.21 TCGA-D9-A1JW-06 16 71220731 71220731 C T HYDIN Missense_Mutation p.G23E 0.22 probably_damaging(0.998) TCGA-D9-A1JW-06 16 71606462 71606462 C T TAT Missense_Mutation p.G180R 0.24 deleterious(0) probably_damaging(0.985) TCGA-D9-A1JW-06 16 71894513 71894513 G A ZNF821 Missense_Mutation p.S216F 0.33 tolerated(0.06) possibly_damaging(0.868) TCGA-D9-A1JW-06 16 72170436 72170436 C T PMFBP1 Missense_Mutation p.D372N 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-D9-A1JW-06 16 72993158 72993158 G A ZFHX3 Missense_Mutation p.S296L 0.23 possibly_damaging(0.885) TCGA-D9-A1JW-06 16 75681539 75681539 T A KARS 5'UTR 0.25 TCGA-D9-A1JW-06 16 82104609 82104609 C T HSD17B2 Missense_Mutation p.L181F 0.21 deleterious(0) benign(0.026) TCGA-D9-A1JW-06 16 89603237 89603237 C T SPG7 Intron 0.26 TCGA-D9-A1JW-06 16 89806275 89806275 C T ZNF276 3'Flank 0.43 TCGA-D9-A1JW-06 16 89806555 89806555 C T ZNF276 3'Flank 0.31 TCGA-D9-A1JW-06 17 10348312 10348312 A C MYH4 Missense_Mutation p.I1816S 0.27 deleterious(0.01) possibly_damaging(0.799) TCGA-D9-A1JW-06 17 10406506 10406506 G A MYH1 Silent p.I917I 0.33 TCGA-D9-A1JW-06 17 10448786 10448786 G A MYH2 Missense_Mutation p.P128S 0.18 deleterious(0) probably_damaging(0.915) TCGA-D9-A1JW-06 17 12898087 12898087 G A ELAC2 Missense_Mutation p.R675W 0.23 deleterious(0) possibly_damaging(0.512) TCGA-D9-A1JW-06 17 16120544 16120544 G A PIGL Missense_Mutation p.E2K 0.40 deleterious_low_confidence(0.02) benign(0.184) TCGA-D9-A1JW-06 17 18137373 18137373 T G LLGL1 Missense_Mutation p.S200A 0.50 tolerated(1) benign(0.004) TCGA-D9-A1JW-06 17 19458545 19458545 C T SLC47A1 Silent p.I188I 0.34 TCGA-D9-A1JW-06 17 21101546 21101546 G A TMEM11 3'UTR 0.56 TCGA-D9-A1JW-06 17 27002005 27002006 - A SUPT6H Frame_Shift_Ins p.M124Nfs*4 0.44 TCGA-D9-A1JW-06 17 27869900 27869900 C T TAOK1 Nonsense_Mutation p.R956* 0.45 TCGA-D9-A1JW-06 17 28652031 28652031 T C TMIGD1 Missense_Mutation p.N148S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 17 31098192 31098192 T G MYO1D Missense_Mutation p.Q222P 0.21 tolerated(0.13) possibly_damaging(0.637) TCGA-D9-A1JW-06 17 33316651 33316651 C T LIG3 Silent p.I286I 0.16 TCGA-D9-A1JW-06 17 35376338 35376338 C T AATF Missense_Mutation p.S478F 0.40 tolerated(0.09) benign(0.395) TCGA-D9-A1JW-06 17 35376339 35376339 C T AATF Silent p.S478S 0.39 TCGA-D9-A1JW-06 17 37441796 37441796 G A FBXL20 Silent p.S143S 0.29 TCGA-D9-A1JW-06 17 37901727 37901727 G A GRB7 Missense_Mutation p.G405E 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 17 38027043 38027043 G A ZPBP2 Nonsense_Mutation p.W72* 0.38 TCGA-D9-A1JW-06 17 38078668 38078668 G A ORMDL3 3'UTR 0.18 TCGA-D9-A1JW-06 17 38498981 38498981 G A RARA Intron 0.45 TCGA-D9-A1JW-06 17 39149939 39149939 C T KRTAP3-3 3'UTR 0.36 TCGA-D9-A1JW-06 17 39305976 39305976 C T KRTAP4-5 Missense_Mutation p.C15Y 0.27 unknown(0) TCGA-D9-A1JW-06 17 39622158 39622158 C T KRT32 Missense_Mutation p.R192Q 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-D9-A1JW-06 17 40328259 40328259 C A KCNH4 Silent p.G214G 0.16 TCGA-D9-A1JW-06 17 40328260 40328260 C T KCNH4 Missense_Mutation p.G214E 0.14 deleterious(0.03) benign(0.002) TCGA-D9-A1JW-06 17 40734029 40734029 G A FAM134C Silent p.V401V 0.42 TCGA-D9-A1JW-06 17 40734258 40734258 G A FAM134C Missense_Mutation p.S325F 0.13 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 17 42828202 42828202 C T DBF4B Missense_Mutation p.P477S 0.37 deleterious_low_confidence(0.01) benign(0.022) TCGA-D9-A1JW-06 17 43111675 43111675 G A DCAKD Missense_Mutation p.R66C 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 17 46629897 46629897 G A HOXB3 5'UTR 0.56 TCGA-D9-A1JW-06 17 48266550 48266550 G A COL1A1 Silent p.F972F 0.39 TCGA-D9-A1JW-06 17 48545403 48545403 T A CHAD Nonsense_Mutation p.K258* 0.49 TCGA-D9-A1JW-06 17 48918327 48918327 G A WFIKKN2 Missense_Mutation p.V560I 0.38 tolerated(0.2) benign(0.09) TCGA-D9-A1JW-06 17 51900694 51900694 G A KIF2B Silent p.L100L 0.38 TCGA-D9-A1JW-06 17 51900695 51900695 G A KIF2B Missense_Mutation p.A101T 0.38 tolerated(0.36) benign(0.005) TCGA-D9-A1JW-06 17 5462774 5462774 C T NLRP1 Silent p.E414E 0.41 TCGA-D9-A1JW-06 17 60484436 60484436 C T EFCAB3 Missense_Mutation p.P296S 0.53 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 17 61623198 61623198 C T KCNH6 Missense_Mutation p.P974S 0.16 tolerated_low_confidence(0.82) benign(0.005) TCGA-D9-A1JW-06 17 62856333 62856333 G A LRRC37A3 Missense_Mutation p.R1311C 0.59 tolerated(0.05) benign(0.033) TCGA-D9-A1JW-06 17 6589424 6589424 G A SLC13A5 3'UTR 0.38 TCGA-D9-A1JW-06 17 66538260 66538260 C T FAM20A Silent p.T325T 0.45 TCGA-D9-A1JW-06 17 66873793 66873793 C T ABCA8 Missense_Mutation p.D1316N 0.43 tolerated(0.27) benign(0.078) TCGA-D9-A1JW-06 17 67197775 67197775 G A ABCA10 Silent p.F347F 0.47 TCGA-D9-A1JW-06 17 7212975 7212975 C T EIF5A Silent p.F37F 0.26 TCGA-D9-A1JW-06 17 72346585 72346585 G A KIF19 Missense_Mutation p.G420E 0.25 tolerated(0.35) benign(0.001) TCGA-D9-A1JW-06 17 72608729 72608729 T C CD300E 3'UTR 0.14 TCGA-D9-A1JW-06 17 72608756 72608756 G A CD300E 3'UTR 0.16 TCGA-D9-A1JW-06 17 72846775 72846775 G A GRIN2C Silent p.I415I 0.12 TCGA-D9-A1JW-06 17 72959095 72959095 C T HID1 Missense_Mutation p.D157N 0.10 deleterious(0.01) benign(0.264) TCGA-D9-A1JW-06 17 73555366 73555366 C T LLGL2 Silent p.V135V 0.12 TCGA-D9-A1JW-06 17 7482994 7482994 C - CD68 5'UTR 0.47 TCGA-D9-A1JW-06 17 7536267 7536267 G A SHBG Silent p.G350G 0.41 TCGA-D9-A1JW-06 17 75471897 75471897 T G SEPT9 Intron 0.54 TCGA-D9-A1JW-06 17 76425362 76425362 C T DNAH17 Missense_Mutation p.R4076H 0.19 probably_damaging(0.996) TCGA-D9-A1JW-06 17 79875933 79875933 C T SIRT7 Silent p.Q25Q 0.35 TCGA-D9-A1JW-06 17 80042511 80042511 G A FASN Missense_Mutation p.S1549F 0.28 deleterious(0) benign(0.194) TCGA-D9-A1JW-06 17 80361871 80361871 A G OGFOD3 Missense_Mutation p.I214T 0.59 deleterious(0) possibly_damaging(0.65) TCGA-D9-A1JW-06 17 80789372 80789372 C T ZNF750 Missense_Mutation p.G320E 0.45 deleterious(0) probably_damaging(0.939) TCGA-D9-A1JW-06 17 80918991 80918991 C T B3GNTL1 Missense_Mutation p.D223N 0.44 tolerated(0.19) benign(0.029) TCGA-D9-A1JW-06 18 12718630 12718630 C T PSMG2 Missense_Mutation p.R135C 0.09 tolerated(0.2) benign(0.022) TCGA-D9-A1JW-06 18 14851567 14851567 G A ANKRD30B Silent p.K1089K 0.14 TCGA-D9-A1JW-06 18 21883634 21883634 G C OSBPL1A Missense_Mutation p.L381V 0.21 tolerated(0.47) benign(0.002) TCGA-D9-A1JW-06 18 28711631 28711631 C T DSC1 Missense_Mutation p.G805R 0.14 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 18 28993144 28993144 G A DSG4 Silent p.G922G 0.24 TCGA-D9-A1JW-06 18 29049074 29049074 C T DSG3 Silent p.A553A 0.28 TCGA-D9-A1JW-06 18 30322008 30322008 G A KLHL14 Missense_Mutation p.R318C 0.28 deleterious(0) probably_damaging(0.973) TCGA-D9-A1JW-06 18 44555154 44555154 C T TCEB3C Missense_Mutation p.D354N 0.03 deleterious(0) possibly_damaging(0.736) TCGA-D9-A1JW-06 18 44559367 44559367 C A TCEB3B 3'UTR 0.27 TCGA-D9-A1JW-06 18 44561083 44561083 C T TCEB3B Missense_Mutation p.E185K 0.37 tolerated(0.1) benign(0.223) TCGA-D9-A1JW-06 18 45566602 45566602 C T ZBTB7C Missense_Mutation p.E293K 0.26 tolerated(0.6) possibly_damaging(0.522) TCGA-D9-A1JW-06 18 45567077 45567077 C T ZBTB7C Silent p.G134G 0.23 TCGA-D9-A1JW-06 18 46570408 46570408 G A DYM 3'UTR 0.22 TCGA-D9-A1JW-06 18 47527636 47527636 G A MYO5B Missense_Mutation p.P201S 0.22 deleterious(0) probably_damaging(0.994) TCGA-D9-A1JW-06 18 50912500 50912500 C T DCC Missense_Mutation p.S816F 0.23 tolerated(0.06) possibly_damaging(0.81) TCGA-D9-A1JW-06 18 54814967 54814967 G A BOD1L2 Missense_Mutation p.E142K 0.41 tolerated(0.2) probably_damaging(0.981) TCGA-D9-A1JW-06 18 55143958 55143958 G A ONECUT2 3'UTR 0.27 TCGA-D9-A1JW-06 18 56586876 56586876 C T ZNF532 Missense_Mutation p.L453F 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 18 59221766 59221766 T A CDH20 Nonsense_Mutation p.Y748* 0.21 TCGA-D9-A1JW-06 18 6942017 6942017 C T LAMA1 3'UTR 0.28 TCGA-D9-A1JW-06 19 11531456 11531456 G A CCDC151 3'UTR 0.71 TCGA-D9-A1JW-06 19 13365963 13365963 G A CACNA1A Silent p.F1567F 0.51 TCGA-D9-A1JW-06 19 15587399 15587399 C T PGLYRP2 Missense_Mutation p.D28N 0.32 tolerated(0.07) possibly_damaging(0.69) TCGA-D9-A1JW-06 19 16059926 16059926 C T OR10H4 Silent p.L37L 0.50 TCGA-D9-A1JW-06 19 16337267 16337267 C T AP1M1 Silent p.I206I 0.33 TCGA-D9-A1JW-06 19 17373418 17373418 G A USHBP1 Silent p.V195V 0.63 TCGA-D9-A1JW-06 19 17412216 17412216 C T ABHD8 Silent p.G70G 0.21 TCGA-D9-A1JW-06 19 17766795 17766795 C T UNC13A Missense_Mutation p.E394K 0.63 tolerated_low_confidence(0.15) benign(0.001) TCGA-D9-A1JW-06 19 18895712 18895712 T C COMP Silent p.Q636Q 0.56 TCGA-D9-A1JW-06 19 19416756 19416756 G A SUGP1 Missense_Mutation p.S147F 0.63 deleterious(0) benign(0.219) TCGA-D9-A1JW-06 19 19656395 19656395 C T CILP2 Missense_Mutation p.P1014L 0.46 deleterious(0) probably_damaging(0.963) TCGA-D9-A1JW-06 19 22939443 22939443 G A ZNF99 3'Flank 0.40 TCGA-D9-A1JW-06 19 2877344 2877344 C T ZNF556 Nonsense_Mutation p.R130* 0.54 TCGA-D9-A1JW-06 19 29698939 29698939 G A UQCRFS1 Missense_Mutation p.S114F 0.17 tolerated(0.05) probably_damaging(1) TCGA-D9-A1JW-06 19 31040061 31040061 G A ZNF536 Missense_Mutation p.D1179N 0.27 tolerated_low_confidence(0.22) benign(0.287) TCGA-D9-A1JW-06 19 31040064 31040064 G A ZNF536 Missense_Mutation p.E1180K 0.27 tolerated_low_confidence(0.12) benign(0.05) TCGA-D9-A1JW-06 19 33639704 33639704 C T WDR88 Silent p.I189I 0.18 TCGA-D9-A1JW-06 19 33639710 33639710 C T WDR88 Silent p.S191S 0.18 TCGA-D9-A1JW-06 19 34985514 34985514 C T WTIP Missense_Mutation p.S352F 0.21 deleterious(0) probably_damaging(0.973) TCGA-D9-A1JW-06 19 35827096 35827096 G A CD22 Silent p.S190S 0.27 TCGA-D9-A1JW-06 19 3595724 3595724 G A TBXA2R Intron 0.69 TCGA-D9-A1JW-06 19 36381329 36381329 G A NFKBID Nonsense_Mutation p.Q224* 0.33 TCGA-D9-A1JW-06 19 36558741 36558741 A T WDR62 Silent p.T237T 0.23 TCGA-D9-A1JW-06 19 38572802 38572802 C T SIPA1L3 Silent p.F199F 0.28 TCGA-D9-A1JW-06 19 3905628 3905628 G A ATCAY Silent p.G111G 0.51 TCGA-D9-A1JW-06 19 39591408 39591408 C T PAPL Missense_Mutation p.S241F 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A1JW-06 19 39913839 39913839 G A PLEKHG2 Silent p.G715G 0.26 TCGA-D9-A1JW-06 19 40408560 40408560 G A FCGBP Missense_Mutation p.P1427S 0.29 probably_damaging(0.999) TCGA-D9-A1JW-06 19 41522721 41522721 C T CYP2B6 Silent p.L489L 0.31 TCGA-D9-A1JW-06 19 41600950 41600950 C T CYP2A13 Silent p.F416F 0.26 TCGA-D9-A1JW-06 19 4222728 4222728 C T ANKRD24 Missense_Mutation p.A1078V 0.18 tolerated(0.19) benign(0.015) TCGA-D9-A1JW-06 19 42492128 42492128 C T ATP1A3 Missense_Mutation p.G119D 0.16 deleterious(0.02) benign(0.034) TCGA-D9-A1JW-06 19 42794405 42794405 T A CIC Missense_Mutation p.F495L 0.30 probably_damaging(0.952) TCGA-D9-A1JW-06 19 43093018 43093018 C T CEACAM8 Silent p.K292K 0.31 TCGA-D9-A1JW-06 19 43371969 43371969 C T PSG1 3'UTR 0.50 TCGA-D9-A1JW-06 19 43575951 43575951 G A PSG2 Missense_Mutation p.P289S 0.19 deleterious(0.04) benign(0.201) TCGA-D9-A1JW-06 19 43763210 43763210 C T PSG9 Missense_Mutation p.E263K 0.29 tolerated(0.08) possibly_damaging(0.905) TCGA-D9-A1JW-06 19 44590395 44590395 G A ZNF284 Missense_Mutation p.G255E 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-D9-A1JW-06 19 45254573 45254573 C T BCL3 Missense_Mutation p.P116S 0.27 tolerated(0.85) benign(0.003) TCGA-D9-A1JW-06 19 49106801 49106801 C T FAM83E Missense_Mutation p.D376N 0.29 deleterious(0) probably_damaging(0.914) TCGA-D9-A1JW-06 19 49131485 49131485 C T SPHK2 Missense_Mutation p.P275S 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 19 49793300 49793300 C T SLC6A16 3'UTR 0.31 TCGA-D9-A1JW-06 19 50823976 50823976 G A KCNC3 Nonsense_Mutation p.Q682* 0.32 TCGA-D9-A1JW-06 19 51530734 51530734 C T KLK11 Missense_Mutation p.G14S 0.26 deleterious_low_confidence(0.03) benign(0.018) TCGA-D9-A1JW-06 19 52272088 52272088 C T FPR2 Silent p.V59V 0.33 TCGA-D9-A1JW-06 19 52376885 52376885 G A ZNF577 Missense_Mutation p.H120Y 0.33 tolerated(0.2) benign(0) TCGA-D9-A1JW-06 19 52376886 52376886 G A ZNF577 Silent p.L119L 0.33 TCGA-D9-A1JW-06 19 53959670 53959670 G A ZNF761 RNA 0.26 TCGA-D9-A1JW-06 19 54072613 54072613 T C ZNF331 5'UTR 0.23 TCGA-D9-A1JW-06 19 54194139 54194139 G A MIR520A RNA 0.29 TCGA-D9-A1JW-06 19 54803734 54803734 G T LILRA3 Silent p.T30T 0.26 TCGA-D9-A1JW-06 19 55085963 55085963 G A LILRA2 Nonsense_Mutation p.W89* 0.28 TCGA-D9-A1JW-06 19 55146561 55146561 G A LILRB1 Missense_Mutation p.R498K 0.18 tolerated(0.53) benign(0.012) TCGA-D9-A1JW-06 19 55351117 55351117 G A KIR2DS4 Missense_Mutation p.G202D 0.24 deleterious_low_confidence(0) benign(0.184) TCGA-D9-A1JW-06 19 55363470 55363470 T C KIR3DL2 Missense_Mutation p.F30L 0.29 tolerated(1) benign(0.014) TCGA-D9-A1JW-06 19 55693000 55693000 C T PTPRH 3'UTR 0.38 TCGA-D9-A1JW-06 19 55711784 55711784 G A PTPRH Missense_Mutation p.P414S 0.34 benign(0.028) TCGA-D9-A1JW-06 19 55889382 55889382 C T TMEM190 Silent p.F115F 0.31 TCGA-D9-A1JW-06 19 56223890 56223890 C T NLRP9 Silent p.G856G 0.20 TCGA-D9-A1JW-06 19 56243946 56243946 C T NLRP9 Silent p.R417R 0.23 TCGA-D9-A1JW-06 19 56466958 56466958 G A NLRP8 Missense_Mutation p.E512K 0.24 deleterious(0) probably_damaging(0.914) TCGA-D9-A1JW-06 19 56515291 56515291 C T NLRP5 Missense_Mutation p.S91L 0.35 tolerated(0.78) benign(0.006) TCGA-D9-A1JW-06 19 56539825 56539825 G A NLRP5 Silent p.G742G 0.29 TCGA-D9-A1JW-06 19 56549442 56549442 C T NLRP5 Silent p.I889I 0.27 TCGA-D9-A1JW-06 19 57641786 57641786 G A USP29 Missense_Mutation p.M581I 0.25 tolerated(0.26) benign(0.002) TCGA-D9-A1JW-06 19 5783676 5783676 G A PRR22 Silent p.P194P 0.67 TCGA-D9-A1JW-06 19 58048918 58048918 C T ZNF549 Silent p.F182F 0.35 TCGA-D9-A1JW-06 19 58762797 58762797 A G ZNF544 Intron 0.30 TCGA-D9-A1JW-06 19 59022257 59022257 C T SLC27A5 Silent p.Q243Q 0.30 TCGA-D9-A1JW-06 19 6213038 6213038 G A MLLT1 3'UTR 0.38 TCGA-D9-A1JW-06 19 6707097 6707097 G A C3 Silent p.G745G 0.67 TCGA-D9-A1JW-06 19 6903930 6903930 G A EMR1 Silent p.L257L 0.22 TCGA-D9-A1JW-06 19 758060 758060 G A MISP Missense_Mutation p.V372M 0.50 tolerated(0.16) benign(0.325) TCGA-D9-A1JW-06 19 7671210 7671210 G A CAMSAP3 Nonsense_Mutation p.W152* 0.46 TCGA-D9-A1JW-06 19 7916645 7916645 G A EVI5L Missense_Mutation p.G326R 0.17 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 19 8194148 8194148 C T FBN3 Missense_Mutation p.G716S 0.50 tolerated(0.08) benign(0.057) TCGA-D9-A1JW-06 19 8536242 8536242 C T HNRNPM Missense_Mutation p.P310S 0.61 deleterious(0.05) probably_damaging(0.993) TCGA-D9-A1JW-06 19 9046923 9046923 C T MUC16 Missense_Mutation p.E11570K 0.47 benign(0.293) TCGA-D9-A1JW-06 19 9062258 9062258 G A MUC16 Silent p.S8396S 0.55 TCGA-D9-A1JW-06 19 9062259 9062259 G A MUC16 Missense_Mutation p.S8396F 0.55 unknown(0) TCGA-D9-A1JW-06 19 9088081 9088081 G A MUC16 Missense_Mutation p.S1245L 0.50 unknown(0) TCGA-D9-A1JW-06 19 9639071 9639071 A T ZNF426 Missense_Mutation p.H550Q 0.52 deleterious(0) probably_damaging(0.996) TCGA-D9-A1JW-06 1 100731969 100731969 T C RTCA Missense_Mutation p.M13T 0.32 deleterious(0) benign(0.113) TCGA-D9-A1JW-06 1 101186048 101186048 C T VCAM1 Silent p.I27I 0.24 TCGA-D9-A1JW-06 1 101186267 101186267 A G VCAM1 Silent p.E100E 0.50 TCGA-D9-A1JW-06 1 103343594 103343594 G A COL11A1 Missense_Mutation p.P1801L 0.33 unknown(0) TCGA-D9-A1JW-06 1 10434391 10434391 C T KIF1B Missense_Mutation p.S1609F 0.21 deleterious(0) possibly_damaging(0.587) TCGA-D9-A1JW-06 1 11090804 11090804 C T MASP2 Splice_Site p.X408_splice 0.15 TCGA-D9-A1JW-06 1 111216243 111216243 C T KCNA3 Missense_Mutation p.E397K 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 112043112 112043112 G A ADORA3 Intron 0.21 TCGA-D9-A1JW-06 1 115229518 115229518 G A AMPD1 Nonsense_Mutation p.Q110* 0.22 TCGA-D9-A1JW-06 1 117303229 117303229 C T CD2 Silent p.S196S 0.23 TCGA-D9-A1JW-06 1 117695749 117695749 C T VTCN1 Missense_Mutation p.D230N 0.24 tolerated(0.75) benign(0) TCGA-D9-A1JW-06 1 12907419 12907419 C T HNRNPCL1 Missense_Mutation p.G242R 0.21 deleterious(0.03) possibly_damaging(0.739) TCGA-D9-A1JW-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.11 tolerated(0.14) benign(0.015) TCGA-D9-A1JW-06 1 13475031 13475031 G A PRAMEF18 Silent p.L366L 0.27 TCGA-D9-A1JW-06 1 143767342 143767342 A C PPIAL4G 3'UTR 0.19 TCGA-D9-A1JW-06 1 145561656 145561656 G A ANKRD35 Silent p.G448G 0.47 TCGA-D9-A1JW-06 1 146724344 146724344 A T CHD1L Missense_Mutation p.N65I 0.43 deleterious(0) benign(0.222) TCGA-D9-A1JW-06 1 147090901 147090901 G A BCL9 Missense_Mutation p.V314M 0.14 tolerated(0.11) benign(0.072) TCGA-D9-A1JW-06 1 149878275 149878275 C T SV2A Silent p.G604G 0.37 TCGA-D9-A1JW-06 1 150305459 150305459 C T PRPF3 Missense_Mutation p.P173S 0.39 tolerated(0.41) benign(0.002) TCGA-D9-A1JW-06 1 150305460 150305460 C T PRPF3 Missense_Mutation p.P173L 0.38 tolerated(0.27) benign(0.001) TCGA-D9-A1JW-06 1 150463152 150463152 C T TARS2 Missense_Mutation p.P155S 0.44 deleterious(0) possibly_damaging(0.874) TCGA-D9-A1JW-06 1 150469026 150469026 C T TARS2 Silent p.F281F 0.17 TCGA-D9-A1JW-06 1 150784402 150784402 G A ARNT 3'UTR 0.24 TCGA-D9-A1JW-06 1 151020271 151020271 G A C1orf56 5'UTR 0.40 TCGA-D9-A1JW-06 1 151773348 151773348 C T LINGO4 3'UTR 0.19 TCGA-D9-A1JW-06 1 151825969 151825969 G A THEM5 Silent p.L25L 0.18 TCGA-D9-A1JW-06 1 152058807 152058807 C T TCHHL1 Missense_Mutation p.G451R 0.41 tolerated(0.08) benign(0.223) TCGA-D9-A1JW-06 1 152129412 152129412 C T RPTN Missense_Mutation p.E55K 0.49 deleterious(0.03) probably_damaging(0.928) TCGA-D9-A1JW-06 1 152275372 152275372 C T FLG Missense_Mutation p.G3997E 0.23 unknown(0) TCGA-D9-A1JW-06 1 152330124 152330124 C T FLG2 Splice_Site p.X47_splice 0.11 TCGA-D9-A1JW-06 1 153309724 153309724 G A PGLYRP4 Silent p.V292V 0.14 TCGA-D9-A1JW-06 1 153390687 153390687 C T S100A7A Silent p.F43F 0.21 TCGA-D9-A1JW-06 1 154479353 154479353 G A TDRD10 Intron 0.14 TCGA-D9-A1JW-06 1 155167720 155167720 C T THBS3 Splice_Site p.X752_splice 0.14 TCGA-D9-A1JW-06 1 155257581 155257581 A G HCN3 Missense_Mutation p.N551S 0.49 deleterious(0.04) benign(0.001) TCGA-D9-A1JW-06 1 155279652 155279652 G C FDPS Missense_Mutation p.E24D 0.22 tolerated_low_confidence(0.21) benign(0.002) TCGA-D9-A1JW-06 1 156269071 156269071 G A VHLL 5'UTR 0.17 TCGA-D9-A1JW-06 1 156714925 156714925 G A HDGF Missense_Mutation p.P76S 0.44 tolerated(0.05) possibly_damaging(0.867) TCGA-D9-A1JW-06 1 1573193 1573193 G A CDK11B Silent p.F468F 0.30 TCGA-D9-A1JW-06 1 157771723 157771723 C T FCRL1 Missense_Mutation p.V290M 0.40 deleterious(0.01) probably_damaging(0.912) TCGA-D9-A1JW-06 1 158263412 158263412 A T CD1C 3'UTR 0.35 TCGA-D9-A1JW-06 1 160011970 160011970 G A KCNJ10 Missense_Mutation p.A118V 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 160390266 160390266 C T VANGL2 Missense_Mutation p.A289V 0.22 tolerated(0.45) benign(0.076) TCGA-D9-A1JW-06 1 160523735 160523735 T C CD84 Missense_Mutation p.N197S 0.21 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 160808808 160808808 G A CD244 Silent p.I234I 0.18 TCGA-D9-A1JW-06 1 161284187 161284187 G A SDHC 5'UTR 0.15 TCGA-D9-A1JW-06 1 161723034 161723034 G A DUSP12 Missense_Mutation p.G282R 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 162368835 162368835 C T SH2D1B Missense_Mutation p.E81K 0.41 deleterious(0.01) probably_damaging(0.966) TCGA-D9-A1JW-06 1 16577615 16577615 G A FBXO42 Silent p.S568S 0.36 TCGA-D9-A1JW-06 1 167779006 167779006 C T ADCY10 Nonsense_Mutation p.W1581* 0.44 TCGA-D9-A1JW-06 1 167830287 167830287 G A ADCY10 Missense_Mutation p.S544L 0.18 tolerated(0.2) benign(0.027) TCGA-D9-A1JW-06 1 171079999 171079999 C T FMO3 Missense_Mutation p.P230S 0.46 deleterious(0) probably_damaging(0.993) TCGA-D9-A1JW-06 1 173883747 173883747 C T SERPINC1 Missense_Mutation p.A118T 0.27 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JW-06 1 175052945 175052945 G A TNN Missense_Mutation p.E370K 0.49 deleterious(0.04) possibly_damaging(0.85) TCGA-D9-A1JW-06 1 176809372 176809372 G A PAPPA2 Missense_Mutation p.G1756R 0.12 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 178490272 178490272 G A TEX35 Intron 0.26 TCGA-D9-A1JW-06 1 179494559 179494559 G A AXDND1 Missense_Mutation p.E863K 0.23 tolerated(0.55) benign(0.001) TCGA-D9-A1JW-06 1 18014191 18014191 G A ARHGEF10L Missense_Mutation p.E1045K 0.13 tolerated(0.35) benign(0.12) TCGA-D9-A1JW-06 1 180910413 180910413 C G KIAA1614 Missense_Mutation p.L1051V 0.18 deleterious(0) probably_damaging(0.959) TCGA-D9-A1JW-06 1 181701835 181701835 G A CACNA1E Silent p.R871R 0.23 TCGA-D9-A1JW-06 1 181767540 181767540 C T CACNA1E Missense_Mutation p.S2171F 0.20 deleterious(0) probably_damaging(0.962) TCGA-D9-A1JW-06 1 182616032 182616032 G A RGS8 Silent p.T145T 0.21 TCGA-D9-A1JW-06 1 185976275 185976275 C T HMCN1 Silent p.G1497G 0.17 TCGA-D9-A1JW-06 1 18661492 18661492 C T IGSF21 Missense_Mutation p.L138F 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A1JW-06 1 186909142 186909142 G A PLA2G4A Missense_Mutation p.E317K 0.56 tolerated(0.14) benign(0.064) TCGA-D9-A1JW-06 1 18702874 18702874 G A IGSF21 Silent p.L362L 0.33 TCGA-D9-A1JW-06 1 19204081 19204081 G A ALDH4A1 Silent p.F322F 0.10 TCGA-D9-A1JW-06 1 196300353 196300353 C T KCNT2 Missense_Mutation p.G679E 0.11 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 1 196876120 196876120 C T CFHR4 Missense_Mutation p.S189F 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A1JW-06 1 196953100 196953100 C T CFHR5 Missense_Mutation p.S88F 0.23 tolerated(0.29) benign(0) TCGA-D9-A1JW-06 1 197326087 197326087 C T CRB1 Missense_Mutation p.S372F 0.17 tolerated(0.1) benign(0.049) TCGA-D9-A1JW-06 1 198685862 198685862 A T PTPRC Missense_Mutation p.N448I 0.49 tolerated(0.08) possibly_damaging(0.515) TCGA-D9-A1JW-06 1 20072116 20072116 G A TMCO4 Silent p.A262A 0.24 TCGA-D9-A1JW-06 1 201330308 201330308 G A TNNT2 Intron 0.44 TCGA-D9-A1JW-06 1 203140628 203140628 C T MYBPH Missense_Mutation p.D226N 0.53 tolerated(0.12) benign(0.193) TCGA-D9-A1JW-06 1 203467944 203467944 G A OPTC Missense_Mutation p.R169K 0.11 tolerated(0.17) benign(0.06) TCGA-D9-A1JW-06 1 204009447 204009447 G A LINC00303 RNA 0.18 TCGA-D9-A1JW-06 1 206224806 206224806 C T AVPR1B Silent p.T122T 0.27 TCGA-D9-A1JW-06 1 206243561 206243561 T C C1orf186 5'UTR 0.42 TCGA-D9-A1JW-06 1 206243562 206243562 C T C1orf186 5'UTR 0.43 TCGA-D9-A1JW-06 1 206821372 206821372 A T DYRK3 Missense_Mutation p.S277C 0.19 tolerated(0.13) probably_damaging(0.998) TCGA-D9-A1JW-06 1 207751155 207751155 C T CR1 Missense_Mutation p.P1515S 0.52 tolerated(0.42) benign(0.001) TCGA-D9-A1JW-06 1 209950711 209950711 G A TRAF3IP3 Silent p.R356R 0.18 TCGA-D9-A1JW-06 1 214556657 214556657 G A PTPN14 Silent p.I847I 0.37 TCGA-D9-A1JW-06 1 216017672 216017672 C T USH2A Silent p.L3074L 0.47 TCGA-D9-A1JW-06 1 22203098 22203098 G A HSPG2 Silent p.F911F 0.26 TCGA-D9-A1JW-06 1 223441998 223441998 G A SUSD4 Silent p.I127I 0.23 TCGA-D9-A1JW-06 1 224577474 224577474 C T WDR26 3'UTR 0.14 TCGA-D9-A1JW-06 1 228487138 228487138 G A OBSCN Silent p.Q4463Q 0.45 TCGA-D9-A1JW-06 1 229730512 229730512 G A TAF5L Silent p.F434F 0.14 TCGA-D9-A1JW-06 1 237052538 237052538 T G MTR Missense_Mutation p.V970G 0.07 deleterious(0) possibly_damaging(0.63) TCGA-D9-A1JW-06 1 240371412 240371412 C T FMN2 Silent p.P1100P 0.50 TCGA-D9-A1JW-06 1 241661172 241661172 A G FH Missense_Mutation p.F497L 0.12 deleterious(0.01) benign(0.376) TCGA-D9-A1JW-06 1 2418730 2418730 C T PLCH2 Silent p.T316T 0.33 TCGA-D9-A1JW-06 1 248039784 248039784 A T TRIM58 Missense_Mutation p.H485L 0.19 deleterious_low_confidence(0.02) benign(0.004) TCGA-D9-A1JW-06 1 248202104 248202104 G A OR2L2 Missense_Mutation p.D179N 0.48 tolerated(0.12) benign(0.12) TCGA-D9-A1JW-06 1 248525725 248525725 C T OR2T4 Silent p.I281I 0.46 TCGA-D9-A1JW-06 1 248551338 248551338 G A OR2T6 Missense_Mutation p.M143I 0.14 tolerated(0.1) benign(0.004) TCGA-D9-A1JW-06 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.24 deleterious(0) possibly_damaging(0.815) TCGA-D9-A1JW-06 1 32126196 32126196 G A COL16A1 Missense_Mutation p.P1290L 0.34 unknown(0) TCGA-D9-A1JW-06 1 32157113 32157113 C T COL16A1 Missense_Mutation p.G435R 0.17 unknown(0) TCGA-D9-A1JW-06 1 32502640 32502640 C T KHDRBS1 Missense_Mutation p.P301S 0.23 tolerated(0.25) benign(0.017) TCGA-D9-A1JW-06 1 33060732 33060732 C T ZBTB8A Missense_Mutation p.L301F 0.19 possibly_damaging(0.907) TCGA-D9-A1JW-06 1 3394464 3394464 G A ARHGEF16 Missense_Mutation p.R500Q 0.25 deleterious(0.02) probably_damaging(1) TCGA-D9-A1JW-06 1 35906721 35906721 C T KIAA0319L Silent p.K963K 0.17 TCGA-D9-A1JW-06 1 3669103 3669103 G A CCDC27 Missense_Mutation p.E20K 0.47 tolerated_low_confidence(0.27) possibly_damaging(0.486) TCGA-D9-A1JW-06 1 3742987 3742987 C T CEP104 Silent p.G734G 0.28 TCGA-D9-A1JW-06 1 3746408 3746408 T A CEP104 Missense_Mutation p.I664F 0.27 deleterious(0.01) possibly_damaging(0.662) TCGA-D9-A1JW-06 1 41467908 41467908 C A CTPS1 Missense_Mutation p.Q391K 0.24 tolerated(0.48) benign(0) TCGA-D9-A1JW-06 1 43748742 43748742 G A C1orf210 Missense_Mutation p.A19V 0.38 deleterious(0.03) benign(0.066) TCGA-D9-A1JW-06 1 43775076 43775076 G A TIE1 Silent p.V402V 0.25 TCGA-D9-A1JW-06 1 45965908 45965908 C T MMACHC 5'UTR 0.38 TCGA-D9-A1JW-06 1 47264785 47264785 C T CYP4B1 Missense_Mutation p.S11F 0.35 tolerated(0.13) possibly_damaging(0.683) TCGA-D9-A1JW-06 1 47610372 47610372 G A CYP4A22 Missense_Mutation p.E350K 0.30 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 1 53558435 53558435 G A SLC1A7 Silent p.F274F 0.26 TCGA-D9-A1JW-06 1 57169687 57169687 C T PRKAA2 Missense_Mutation p.P278S 0.21 deleterious(0) probably_damaging(0.997) TCGA-D9-A1JW-06 1 57209936 57209936 C T C1orf168 Missense_Mutation p.G464E 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-D9-A1JW-06 1 57537993 57537993 C T DAB1 Missense_Mutation p.G134E 0.25 deleterious(0) possibly_damaging(0.639) TCGA-D9-A1JW-06 1 60466815 60466815 C G C1orf87 Missense_Mutation p.K402N 0.27 tolerated(0.1) possibly_damaging(0.801) TCGA-D9-A1JW-06 1 6158556 6158556 A G KCNAB2 Silent p.K390K 0.21 TCGA-D9-A1JW-06 1 6206416 6206416 G A CHD5 Missense_Mutation p.P553L 0.41 tolerated(0.15) benign(0.009) TCGA-D9-A1JW-06 1 6206417 6206417 G A CHD5 Missense_Mutation p.P553S 0.18 tolerated(0.39) benign(0.027) TCGA-D9-A1JW-06 1 63997598 63997598 G C EFCAB7 Missense_Mutation p.E99Q 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-D9-A1JW-06 1 6505809 6505809 G A ESPN Silent p.G426G 0.37 TCGA-D9-A1JW-06 1 71318510 71318510 G A PTGER3 3'UTR 0.23 TCGA-D9-A1JW-06 1 72058606 72058606 T G NEGR1 Silent p.T278T 0.18 TCGA-D9-A1JW-06 1 75037636 75037636 C T C1orf173 Missense_Mutation p.G1253E 0.26 tolerated(0.06) benign(0.44) TCGA-D9-A1JW-06 1 75078373 75078373 G A C1orf173 Missense_Mutation p.S374F 0.29 deleterious(0) possibly_damaging(0.882) TCGA-D9-A1JW-06 1 77528660 77528660 G A ST6GALNAC5 Silent p.R260R 0.20 TCGA-D9-A1JW-06 1 78177436 78177436 A T USP33 Missense_Mutation p.I832N 0.19 deleterious(0.03) possibly_damaging(0.786) TCGA-D9-A1JW-06 1 89448887 89448887 G A RBMXL1 Missense_Mutation p.S208F 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-D9-A1JW-06 1 91850744 91850744 G A HFM1 Missense_Mutation p.P268S 0.55 deleterious(0.04) probably_damaging(0.916) TCGA-D9-A1JW-06 1 9324817 9324817 C T H6PD Silent p.T755T 0.24 TCGA-D9-A1JW-06 1 97839184 97839184 G A DPYD Missense_Mutation p.A664V 0.22 deleterious(0) possibly_damaging(0.555) TCGA-D9-A1JW-06 20 10036266 10036266 C T ANKEF1 Silent p.I763I 0.48 TCGA-D9-A1JW-06 20 1629916 1629916 C T SIRPG Missense_Mutation p.G71E 0.22 tolerated(0.13) benign(0.224) TCGA-D9-A1JW-06 20 20033086 20033086 G A CRNKL1 Silent p.S128S 0.31 TCGA-D9-A1JW-06 20 20517359 20517359 G A RALGAPA2 Missense_Mutation p.P1119S 0.18 deleterious(0.04) benign(0.072) TCGA-D9-A1JW-06 20 2413301 2413301 G A TGM6 3'UTR 0.22 TCGA-D9-A1JW-06 20 25498400 25498400 G A NINL Missense_Mutation p.S89F 0.41 deleterious(0.02) benign(0.254) TCGA-D9-A1JW-06 20 2604977 2604977 C T TMC2 Silent p.F747F 0.30 TCGA-D9-A1JW-06 20 30381722 30381722 C T TPX2 Silent p.I527I 0.25 TCGA-D9-A1JW-06 20 30747794 30747794 G A TM9SF4 Splice_Site p.X524_splice 0.23 TCGA-D9-A1JW-06 20 31671373 31671373 C T BPIFB4 Missense_Mutation p.R124C 0.26 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-D9-A1JW-06 20 31805385 31805385 C T BPIFA3 Silent p.L15L 0.18 TCGA-D9-A1JW-06 20 3240173 3240173 G A C20orf194 Missense_Mutation p.P1003L 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-D9-A1JW-06 20 33328820 33328820 G A NCOA6 Missense_Mutation p.P1747L 0.19 benign(0.092) TCGA-D9-A1JW-06 20 33449295 33449295 G A GGT7 Missense_Mutation p.P210S 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 20 33588110 33588110 G A MYH7B Missense_Mutation p.R1641Q 0.27 possibly_damaging(0.814) TCGA-D9-A1JW-06 20 35060380 35060380 C T DLGAP4 Missense_Mutation p.P87L 0.32 deleterious(0) probably_damaging(0.963) TCGA-D9-A1JW-06 20 35507531 35507531 C T TLDC2 Silent p.L93L 0.21 TCGA-D9-A1JW-06 20 39986017 39986017 C T LPIN3 Missense_Mutation p.H657Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 20 42213775 42213775 C T SGK2 3'UTR 0.33 TCGA-D9-A1JW-06 20 43851307 43851307 A C SEMG2 Missense_Mutation p.K345T 0.24 deleterious(0.02) possibly_damaging(0.87) TCGA-D9-A1JW-06 20 44238844 44238844 T C WFDC9 5'UTR 0.30 TCGA-D9-A1JW-06 20 44511516 44511516 C A ZSWIM1 Missense_Mutation p.F95L 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A1JW-06 20 44664159 44664159 A G SLC12A5 Silent p.K111K 0.23 TCGA-D9-A1JW-06 20 44806637 44806637 G A CDH22 Silent p.S621S 0.22 TCGA-D9-A1JW-06 20 51870935 51870935 C T TSHZ2 Missense_Mutation p.S313F 0.26 deleterious(0) possibly_damaging(0.863) TCGA-D9-A1JW-06 20 54573646 54573646 G A CBLN4 Silent p.S191S 0.28 TCGA-D9-A1JW-06 20 55209305 55209305 C T TFAP2C Silent p.L301L 0.20 TCGA-D9-A1JW-06 20 57415169 57415169 G A RP4-806M20.3 5'Flank 0.21 TCGA-D9-A1JW-06 20 57829603 57829603 G A ZNF831 Silent p.R1613R 0.32 TCGA-D9-A1JW-06 20 60901756 60901756 G A LAMA5 Missense_Mutation p.R1759C 0.24 possibly_damaging(0.672) TCGA-D9-A1JW-06 20 9546738 9546738 G A PAK7 Silent p.S428S 0.33 TCGA-D9-A1JW-06 20 9546835 9546835 G A PAK7 Missense_Mutation p.S396F 0.21 deleterious(0.04) probably_damaging(0.991) TCGA-D9-A1JW-06 21 10942968 10942968 G A TPTE Missense_Mutation p.H207Y 0.14 tolerated(0.14) benign(0.444) TCGA-D9-A1JW-06 21 16340213 16340213 G A NRIP1 Silent p.L101L 0.25 TCGA-D9-A1JW-06 21 17183476 17183476 A G USP25 Missense_Mutation p.N293S 0.28 deleterious(0.03) possibly_damaging(0.621) TCGA-D9-A1JW-06 21 22790801 22790801 T C NCAM2 Silent p.P464P 0.24 TCGA-D9-A1JW-06 21 28296349 28296349 G A ADAMTS5 3'UTR 0.23 TCGA-D9-A1JW-06 21 31062114 31062114 C T GRIK1 Missense_Mutation p.A160T 0.35 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 21 34621083 34621083 C T IFNAR2 Missense_Mutation p.P155L 0.25 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 21 38569994 38569994 A G TTC3 Silent p.K1901K 0.33 TCGA-D9-A1JW-06 21 39427068 39427068 C T DSCR4 Missense_Mutation p.E80K 0.29 possibly_damaging(0.486) TCGA-D9-A1JW-06 21 41447102 41447102 C T DSCAM Missense_Mutation p.E1584K 0.22 tolerated(0.4) benign(0.003) TCGA-D9-A1JW-06 21 45535741 45535741 G A PWP2 Missense_Mutation p.G259E 0.32 tolerated(0.31) benign(0.302) TCGA-D9-A1JW-06 21 45535744 45535744 A G PWP2 Missense_Mutation p.K260R 0.33 tolerated(0.16) benign(0.014) TCGA-D9-A1JW-06 21 46101941 46101941 G A KRTAP12-1 Missense_Mutation p.S33F 0.27 tolerated(0.33) possibly_damaging(0.788) TCGA-D9-A1JW-06 22 17072668 17072668 G A CCT8L2 Missense_Mutation p.T258M 0.21 deleterious(0) possibly_damaging(0.604) TCGA-D9-A1JW-06 22 17073303 17073303 G A CCT8L2 Silent p.V46V 0.22 TCGA-D9-A1JW-06 22 17600315 17600315 T C CECR6 Missense_Mutation p.Y568C 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D9-A1JW-06 22 19865681 19865681 C T TXNRD2 Silent p.L459L 0.24 TCGA-D9-A1JW-06 22 22318385 22318385 C T TOP3B Missense_Mutation p.A372T 0.41 tolerated(0.56) benign(0.009) TCGA-D9-A1JW-06 22 22869717 22869717 G A ZNF280A Missense_Mutation p.R80C 0.30 deleterious(0.01) benign(0.052) TCGA-D9-A1JW-06 22 29704233 29704233 G A GAS2L1 Silent p.P46P 0.50 TCGA-D9-A1JW-06 22 30887647 30887647 C T SEC14L4 Missense_Mutation p.E332K 0.24 tolerated(0.18) benign(0.032) TCGA-D9-A1JW-06 22 31850259 31850259 G A EIF4ENIF1 Silent p.H461H 0.22 TCGA-D9-A1JW-06 22 32756602 32756602 G A RFPL3 Missense_Mutation p.G246E 0.21 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 22 33253291 33253291 C T TIMP3 Missense_Mutation p.S87F 0.23 tolerated(0.39) probably_damaging(0.973) TCGA-D9-A1JW-06 22 37196815 37196815 G A PVALB 3'UTR 0.44 TCGA-D9-A1JW-06 22 37622712 37622712 C T RAC2 Intron 0.34 TCGA-D9-A1JW-06 22 38051951 38051951 G T SH3BP1 3'UTR 0.20 TCGA-D9-A1JW-06 22 38461067 38461067 C T PICK1 Missense_Mutation p.T71I 0.24 tolerated(0.25) benign(0.014) TCGA-D9-A1JW-06 22 39421141 39421141 C T APOBEC3D Missense_Mutation p.P93S 0.13 tolerated(0.5) benign(0.06) TCGA-D9-A1JW-06 22 45244881 45244881 G A ARHGAP8 Missense_Mutation p.R395Q 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-D9-A1JW-06 22 46724623 46724623 C T GTSE1 Missense_Mutation p.S588F 0.24 tolerated(0.11) probably_damaging(0.955) TCGA-D9-A1JW-06 22 50484295 50484295 C T TTLL8 Silent p.Q202Q 0.42 TCGA-D9-A1JW-06 22 50957150 50957150 C T NCAPH2 Missense_Mutation p.S240F 0.50 deleterious(0.01) possibly_damaging(0.776) TCGA-D9-A1JW-06 2 103324924 103324924 C T SLC9A2 Silent p.A805A 0.35 TCGA-D9-A1JW-06 2 105859055 105859055 G A GPR45 Missense_Mutation p.R247Q 0.33 tolerated(0.18) benign(0.164) TCGA-D9-A1JW-06 2 105859056 105859056 G A GPR45 Silent p.R247R 0.32 TCGA-D9-A1JW-06 2 108999630 108999630 C T SULT1C4 Missense_Mutation p.P159S 0.30 deleterious(0.04) probably_damaging(0.912) TCGA-D9-A1JW-06 2 113676137 113676137 G A IL37 Splice_Site p.X137_splice 0.22 TCGA-D9-A1JW-06 2 113832950 113832950 G A IL1F10 3'UTR 0.20 TCGA-D9-A1JW-06 2 113959045 113959045 G A PSD4 3'UTR 0.18 TCGA-D9-A1JW-06 2 120005431 120005431 C T STEAP3 Silent p.F233F 0.22 TCGA-D9-A1JW-06 2 120206320 120206320 G A SCTR Silent p.L320L 0.21 TCGA-D9-A1JW-06 2 128081807 128081807 G A MAP3K2 Missense_Mutation p.P230S 0.29 tolerated(0.67) benign(0.01) TCGA-D9-A1JW-06 2 137988722 137988722 C T THSD7B Missense_Mutation p.S611L 0.41 deleterious(0) possibly_damaging(0.765) TCGA-D9-A1JW-06 2 139308526 139308526 C T SPOPL Missense_Mutation p.S85F 0.21 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 2 141245207 141245207 A T LRP1B Nonsense_Mutation p.C3074* 0.21 TCGA-D9-A1JW-06 2 1480864 1480864 G A TPO Missense_Mutation p.E276K 0.17 tolerated(0.85) benign(0.145) TCGA-D9-A1JW-06 2 152226710 152226710 G A TNFAIP6 Missense_Mutation p.D191N 0.20 deleterious(0) probably_damaging(0.984) TCGA-D9-A1JW-06 2 158412607 158412607 G A ACVR1C Missense_Mutation p.S181F 0.16 deleterious(0) probably_damaging(0.978) TCGA-D9-A1JW-06 2 165984368 165984368 C T SCN3A Missense_Mutation p.E1056K 0.29 tolerated(0.11) benign(0.423) TCGA-D9-A1JW-06 2 165994396 165994396 C T SCN3A Missense_Mutation p.G795E 0.47 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 2 166870329 166870329 C A SCN1A Silent p.T1210T 0.17 TCGA-D9-A1JW-06 2 168099883 168099883 A T XIRP2 Missense_Mutation p.R661W 0.28 possibly_damaging(0.882) TCGA-D9-A1JW-06 2 168726477 168726477 G A B3GALT1 Missense_Mutation p.E310K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-D9-A1JW-06 2 170470973 170470973 G A PPIG Splice_Site p.X126_splice 0.29 TCGA-D9-A1JW-06 2 175957886 175957886 C T ATF2 Missense_Mutation p.R363K 0.24 deleterious(0) probably_damaging(0.996) TCGA-D9-A1JW-06 2 176948373 176948373 C T EVX2 Silent p.Q44Q 0.17 TCGA-D9-A1JW-06 2 179238741 179238741 C T OSBPL6 Missense_Mutation p.S532L 0.23 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 2 179315768 179315768 G A PRKRA 5'UTR 0.32 TCGA-D9-A1JW-06 2 179433986 179433986 G A TTN Missense_Mutation p.P25625S 0.23 TCGA-D9-A1JW-06 2 17950004 17950004 G A GEN1 Splice_Site p.X213_splice 0.17 TCGA-D9-A1JW-06 2 179545055 179545055 G A TTN Missense_Mutation p.P11115L 0.30 TCGA-D9-A1JW-06 2 179586805 179586805 C T TTN Missense_Mutation p.G7529R 0.23 TCGA-D9-A1JW-06 2 179604872 179604872 G A TTN Missense_Mutation p.P4363L 0.19 TCGA-D9-A1JW-06 2 179612157 179612157 T G TTN Intron 0.21 TCGA-D9-A1JW-06 2 179612692 179612692 T C TTN Intron 0.21 TCGA-D9-A1JW-06 2 179650858 179650858 C G TTN Missense_Mutation p.G696A 0.12 TCGA-D9-A1JW-06 2 179664595 179664595 G A TTN Missense_Mutation p.S209L 0.49 TCGA-D9-A1JW-06 2 183605028 183605028 T C DNAJC10 Silent p.F330F 0.28 TCGA-D9-A1JW-06 2 185801540 185801540 C T ZNF804A Silent p.L473L 0.18 TCGA-D9-A1JW-06 2 188331670 188331670 T C TFPI Missense_Mutation p.N303S 0.23 deleterious(0.03) benign(0.04) TCGA-D9-A1JW-06 2 189854859 189854859 G A COL3A1 Missense_Mutation p.G243E 0.43 unknown(0) TCGA-D9-A1JW-06 2 196681594 196681594 A C DNAH7 Silent p.S3173S 0.33 TCGA-D9-A1JW-06 2 196722274 196722274 C T DNAH7 Silent p.R2747R 0.20 TCGA-D9-A1JW-06 2 198415074 198415074 T C HSPE1-MOB4 Silent p.A206A 0.38 TCGA-D9-A1JW-06 2 204116694 204116694 C T CYP20A1 Silent p.D98D 0.16 TCGA-D9-A1JW-06 2 207009641 207009641 C T NDUFS1 Missense_Mutation p.E297K 0.29 deleterious(0) possibly_damaging(0.751) TCGA-D9-A1JW-06 2 21228841 21228841 C T APOB Nonsense_Mutation p.W3633* 0.31 TCGA-D9-A1JW-06 2 21230763 21230763 C T APOB Missense_Mutation p.D2993N 0.29 benign(0.036) TCGA-D9-A1JW-06 2 217724272 217724272 C T TNP1 3'UTR 0.39 TCGA-D9-A1JW-06 2 219553455 219553455 C T STK36 Silent p.I472I 0.22 TCGA-D9-A1JW-06 2 219920370 219920370 G A IHH Silent p.P265P 0.33 TCGA-D9-A1JW-06 2 220161981 220161981 C T PTPRN Missense_Mutation p.D688N 0.29 deleterious(0) probably_damaging(0.997) TCGA-D9-A1JW-06 2 220239598 220239598 G A DNPEP Silent p.L462L 0.18 TCGA-D9-A1JW-06 2 223806250 223806250 C T ACSL3 Missense_Mutation p.R681C 0.35 tolerated(0.06) benign(0.001) TCGA-D9-A1JW-06 2 227860179 227860179 T C RHBDD1 Missense_Mutation p.F297L 0.27 tolerated(0.09) benign(0.014) TCGA-D9-A1JW-06 2 227872752 227872752 G A COL4A4 Silent p.I1597I 0.40 TCGA-D9-A1JW-06 2 227892641 227892641 C T COL4A4 Missense_Mutation p.R1353K 0.19 unknown(0) TCGA-D9-A1JW-06 2 228137729 228137729 G A COL4A3 Missense_Mutation p.G608E 0.32 unknown(0) TCGA-D9-A1JW-06 2 228881744 228881744 G A SPHKAP Missense_Mutation p.P1276S 0.27 deleterious(0) possibly_damaging(0.703) TCGA-D9-A1JW-06 2 233245988 233245988 G A ALPP Missense_Mutation p.R407K 0.23 tolerated(0.85) benign(0.001) TCGA-D9-A1JW-06 2 234602064 234602064 C T UGT1A6 Silent p.F138F 0.22 TCGA-D9-A1JW-06 2 234627728 234627728 G A UGT1A4 Missense_Mutation p.E88K 0.42 tolerated(0.07) benign(0.044) TCGA-D9-A1JW-06 2 234676526 234676526 C T UGT1A10 Missense_Mutation p.S340L 0.20 tolerated(0.16) possibly_damaging(0.637) TCGA-D9-A1JW-06 2 234858746 234858746 G A TRPM8 Missense_Mutation p.V366M 0.29 tolerated(0.09) benign(0.232) TCGA-D9-A1JW-06 2 237374339 237374339 G A IQCA1 Silent p.L245L 0.22 TCGA-D9-A1JW-06 2 24199943 24199943 G A UBXN2A Silent p.K95K 0.28 TCGA-D9-A1JW-06 2 242572592 242572592 G A THAP4 Missense_Mutation p.S327F 0.28 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-D9-A1JW-06 2 26725235 26725235 C T OTOF Missense_Mutation p.G215R 0.35 tolerated(0.06) benign(0.004) TCGA-D9-A1JW-06 2 27375569 27375569 G A TCF23 Missense_Mutation p.R160Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 2 27465619 27465619 C T CAD Silent p.F2118F 0.26 TCGA-D9-A1JW-06 2 27558792 27558792 G A GTF3C2 Missense_Mutation p.P487S 0.25 tolerated(0.85) benign(0.001) TCGA-D9-A1JW-06 2 27558793 27558793 G A GTF3C2 Silent p.T486T 0.24 TCGA-D9-A1JW-06 2 27803944 27803944 A G C2orf16 Missense_Mutation p.N1502S 0.28 tolerated(0.09) unknown(0) TCGA-D9-A1JW-06 2 31754518 31754518 A G AL133247.2 Intron 0.30 TCGA-D9-A1JW-06 2 37113856 37113856 T C STRN Intron 0.32 TCGA-D9-A1JW-06 2 37295975 37295975 C A HEATR5B Silent p.R342R 0.38 TCGA-D9-A1JW-06 2 39931305 39931305 C T TMEM178A Missense_Mutation p.T162I 0.18 tolerated(0.08) benign(0.037) TCGA-D9-A1JW-06 2 46378243 46378243 G C PRKCE Missense_Mutation p.E599Q 0.17 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 2 46588101 46588101 C T EPAS1 Silent p.P217P 0.41 TCGA-D9-A1JW-06 2 48027726 48027726 G T MSH6 Missense_Mutation p.M868I 0.30 tolerated(0.41) benign(0.002) TCGA-D9-A1JW-06 2 50724508 50724508 C T NRXN1 Missense_Mutation p.D988N 0.25 tolerated(0.32) benign(0.214) TCGA-D9-A1JW-06 2 54133982 54133982 G A PSME4 Silent p.I936I 0.17 TCGA-D9-A1JW-06 2 62450312 62450312 G C B3GNT2 Silent p.L319L 0.31 TCGA-D9-A1JW-06 2 63085637 63085637 C T EHBP1 Missense_Mutation p.S244F 0.21 tolerated(0.22) possibly_damaging(0.841) TCGA-D9-A1JW-06 2 64323416 64323416 C T PELI1 Missense_Mutation p.G178E 0.18 tolerated(0.13) benign(0.236) TCGA-D9-A1JW-06 2 64794825 64794825 A C AFTPH Silent p.R689R 0.26 TCGA-D9-A1JW-06 2 68692281 68692281 T C FBXO48 5'UTR 0.26 TCGA-D9-A1JW-06 2 70933534 70933534 C T ADD2 Missense_Mutation p.E3K 0.29 tolerated(0.46) benign(0.012) TCGA-D9-A1JW-06 2 71043181 71043181 G A CLEC4F Silent p.R444R 0.23 TCGA-D9-A1JW-06 2 73680811 73680811 C A ALMS1 Missense_Mutation p.S2385Y 0.28 possibly_damaging(0.664) TCGA-D9-A1JW-06 2 74460589 74460589 C T SLC4A5 Silent p.L845L 0.29 TCGA-D9-A1JW-06 2 74690339 74690339 C T MOGS Missense_Mutation p.D252N 0.23 tolerated(0.45) benign(0.009) TCGA-D9-A1JW-06 2 74717474 74717474 C T TTC31 Silent p.S112S 0.24 TCGA-D9-A1JW-06 2 79349984 79349984 G A REG1A Nonsense_Mutation p.W113* 0.24 TCGA-D9-A1JW-06 2 85097750 85097750 G A TRABD2A Missense_Mutation p.L90F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 2 87140945 87140945 G A RGPD1 5'Flank 0.44 TCGA-D9-A1JW-06 2 88409921 88409921 G A SMYD1 Missense_Mutation p.E455K 0.26 tolerated(0.1) benign(0.089) TCGA-D9-A1JW-06 2 89309711 89309711 C T IGKV1-9 Missense_Mutation p.R40K 0.25 tolerated(0.17) benign(0.035) TCGA-D9-A1JW-06 2 96934294 96934294 G C CIAO1 Missense_Mutation p.V197L 0.26 deleterious(0) probably_damaging(0.997) TCGA-D9-A1JW-06 2 96955567 96955567 G A SNRNP200 Silent p.V970V 0.23 TCGA-D9-A1JW-06 3 100352130 100352130 G A GPR128 Missense_Mutation p.R119Q 0.13 tolerated(0.08) possibly_damaging(0.595) TCGA-D9-A1JW-06 3 105378047 105378047 G A CBLB Missense_Mutation p.P906S 0.16 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-D9-A1JW-06 3 105378048 105378048 G A CBLB Silent p.P905P 0.16 TCGA-D9-A1JW-06 3 108219053 108219053 G A MYH15 Silent p.V156V 0.30 TCGA-D9-A1JW-06 3 108476073 108476073 G A RETNLB 5'UTR 0.23 TCGA-D9-A1JW-06 3 108682317 108682317 C T MORC1 Missense_Mutation p.D915N 0.23 tolerated(0.15) benign(0.015) TCGA-D9-A1JW-06 3 110837599 110837599 C T PVRL3 Missense_Mutation p.P200L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 3 111312346 111312346 A T ZBED2 3'UTR 0.44 TCGA-D9-A1JW-06 3 111603001 111603001 C T PHLDB2 Missense_Mutation p.S26F 0.30 deleterious_low_confidence(0) benign(0.015) TCGA-D9-A1JW-06 3 111898498 111898498 C T SLC9C1 Silent p.K933K 0.37 TCGA-D9-A1JW-06 3 12198884 12198884 C T TIMP4 Splice_Site p.X79_splice 0.05 TCGA-D9-A1JW-06 3 12224992 12224992 G A SYN2 RNA 0.24 TCGA-D9-A1JW-06 3 123385168 123385168 G A MYLK Silent p.F1243F 0.15 TCGA-D9-A1JW-06 3 123452773 123452773 C T MYLK Missense_Mutation p.R357K 0.26 tolerated(0.42) benign(0.044) TCGA-D9-A1JW-06 3 123456314 123456314 C T MYLK Missense_Mutation p.G222E 0.25 tolerated(1) benign(0.156) TCGA-D9-A1JW-06 3 124390539 124390539 G A KALRN Missense_Mutation p.E337K 0.27 tolerated(0.07) benign(0.005) TCGA-D9-A1JW-06 3 124390670 124390670 C T KALRN Silent p.P380P 0.30 TCGA-D9-A1JW-06 3 124449261 124449261 C T UMPS 5'UTR 0.28 TCGA-D9-A1JW-06 3 128780637 128780637 G A GP9 Missense_Mutation p.D19N 0.19 tolerated(0.25) benign(0.077) TCGA-D9-A1JW-06 3 129247891 129247891 C T RHO Silent p.F105F 0.27 TCGA-D9-A1JW-06 3 133114707 133114707 G A TMEM108 Splice_Site p.X536_splice 0.23 TCGA-D9-A1JW-06 3 150661641 150661641 T A CLRN1 Intron 0.16 TCGA-D9-A1JW-06 3 151155254 151155254 T G IGSF10 Silent p.P2365P 0.34 TCGA-D9-A1JW-06 3 151458570 151458570 G A AADACL2 Missense_Mutation p.R92Q 0.33 deleterious(0) probably_damaging(0.925) TCGA-D9-A1JW-06 3 151545698 151545698 G A AADAC Missense_Mutation p.G313E 0.15 tolerated(0.12) possibly_damaging(0.461) TCGA-D9-A1JW-06 3 151598398 151598398 A T SUCNR1 Nonsense_Mutation p.K23* 0.21 TCGA-D9-A1JW-06 3 153998449 153998449 T A DHX36 Missense_Mutation p.K829M 0.23 tolerated(0.05) possibly_damaging(0.824) TCGA-D9-A1JW-06 3 155571302 155571302 A T SLC33A1 Missense_Mutation p.V162E 0.30 deleterious(0) probably_damaging(0.972) TCGA-D9-A1JW-06 3 158787208 158787208 C T IQCJ 5'UTR 0.18 TCGA-D9-A1JW-06 3 158983184 158983184 C T IQCJ Missense_Mutation p.L158F 0.18 tolerated_low_confidence(0.18) benign(0.007) TCGA-D9-A1JW-06 3 164750406 164750406 G A SI Silent p.I880I 0.46 TCGA-D9-A1JW-06 3 16635178 16635178 C T DAZL Missense_Mutation p.G260E 0.50 tolerated(0.06) benign(0.341) TCGA-D9-A1JW-06 3 169579543 169579543 G A LRRC31 Silent p.F78F 0.34 TCGA-D9-A1JW-06 3 170198172 170198172 G A SLC7A14 Silent p.P633P 0.14 TCGA-D9-A1JW-06 3 172061888 172061888 C T FNDC3B Missense_Mutation p.S697L 0.22 tolerated(0.19) benign(0.009) TCGA-D9-A1JW-06 3 178525167 178525167 G A KCNMB2 5'UTR 0.21 TCGA-D9-A1JW-06 3 178968596 178968596 C T KCNMB3 Missense_Mutation p.M65I 0.29 deleterious(0) benign(0.371) TCGA-D9-A1JW-06 3 183823660 183823660 G A HTR3E Silent p.G302G 0.19 TCGA-D9-A1JW-06 3 186394924 186394924 C T HRG Missense_Mutation p.P277L 0.21 tolerated(0.07) possibly_damaging(0.713) TCGA-D9-A1JW-06 3 186760642 186760642 C T ST6GAL1 Silent p.L51L 0.26 TCGA-D9-A1JW-06 3 189712007 189712007 G A LEPREL1 Silent p.F233F 0.20 TCGA-D9-A1JW-06 3 191179158 191179158 G A PYDC2 Silent p.G69G 0.27 TCGA-D9-A1JW-06 3 193174929 193174929 C T ATP13A4 Missense_Mutation p.G592E 0.31 tolerated(0.42) probably_damaging(0.998) TCGA-D9-A1JW-06 3 193201733 193201733 C T ATP13A4 Missense_Mutation p.G267E 0.22 tolerated(0.28) benign(0.009) TCGA-D9-A1JW-06 3 194062271 194062276 CAGGTT - CPN2 In_Frame_Del p.N386_L387del 0.17 TCGA-D9-A1JW-06 3 195473958 195473958 C T MUC4 3'UTR 0.21 TCGA-D9-A1JW-06 3 197505288 197505288 C T FYTTD1 Missense_Mutation p.P271S 0.19 deleterious(0) possibly_damaging(0.874) TCGA-D9-A1JW-06 3 24169111 24169111 C T THRB Silent p.L341L 0.14 TCGA-D9-A1JW-06 3 3095505 3095505 G A CNTN4 Nonsense_Mutation p.W942* 0.21 TCGA-D9-A1JW-06 3 35834018 35834018 A T ARPP21 Missense_Mutation p.Y727F 0.27 deleterious(0.04) benign(0.072) TCGA-D9-A1JW-06 3 36872408 36872408 G A TRANK1 Missense_Mutation p.S2845L 0.24 tolerated(0.67) benign(0.003) TCGA-D9-A1JW-06 3 37725427 37725427 A G ITGA9 Missense_Mutation p.N663S 0.27 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 3 38936058 38936058 G A SCN11A Missense_Mutation p.A934V 0.25 tolerated(0.53) benign(0.01) TCGA-D9-A1JW-06 3 38991652 38991652 C T SCN11A Missense_Mutation p.D68N 0.20 tolerated(0.18) benign(0.016) TCGA-D9-A1JW-06 3 40231917 40231917 C T MYRIP Missense_Mutation p.S543F 0.35 tolerated(0.14) benign(0.023) TCGA-D9-A1JW-06 3 40558019 40558019 G A ZNF620 Missense_Mutation p.E312K 0.28 deleterious(0) possibly_damaging(0.593) TCGA-D9-A1JW-06 3 44844342 44844342 G A KIF15 Missense_Mutation p.E516K 0.22 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 3 44893415 44893415 A T KIF15 Missense_Mutation p.M1315L 0.20 tolerated(0.77) benign(0.001) TCGA-D9-A1JW-06 3 44945382 44945382 C T TGM4 Silent p.F326F 0.25 TCGA-D9-A1JW-06 3 46245004 46245004 G A CCR1 Silent p.F267F 0.24 TCGA-D9-A1JW-06 3 47043884 47043884 C T NBEAL2 Silent p.F1725F 0.21 TCGA-D9-A1JW-06 3 48310173 48310173 C T ZNF589 Missense_Mutation p.S331L 0.25 deleterious(0.03) possibly_damaging(0.582) TCGA-D9-A1JW-06 3 48461137 48461137 T - PLXNB1 Frame_Shift_Del p.D853Afs*72 0.37 TCGA-D9-A1JW-06 3 48461138 48461138 C A PLXNB1 Missense_Mutation p.D853Y 0.37 tolerated(0.05) possibly_damaging(0.905) TCGA-D9-A1JW-06 3 48659027 48659027 G A TMEM89 Missense_Mutation p.P55S 0.22 tolerated(0.15) benign(0.163) TCGA-D9-A1JW-06 3 49156456 49156456 T C USP19 Silent p.K41K 0.19 TCGA-D9-A1JW-06 3 50097165 50097165 C A RBM6 Silent p.A738A 0.31 TCGA-D9-A1JW-06 3 50418224 50418224 C T CACNA2D2 Missense_Mutation p.R266Q 0.33 deleterious(0.04) possibly_damaging(0.853) TCGA-D9-A1JW-06 3 51399296 51399296 G A DOCK3 Missense_Mutation p.M1671I 0.40 tolerated(0.07) benign(0) TCGA-D9-A1JW-06 3 51743182 51743182 C T GRM2 Silent p.R61R 0.30 TCGA-D9-A1JW-06 3 52422243 52422243 C T DNAH1 Nonsense_Mutation p.Q3022* 0.15 TCGA-D9-A1JW-06 3 52819165 52819165 G A ITIH1 Missense_Mutation p.E505K 0.27 tolerated(0.24) benign(0.014) TCGA-D9-A1JW-06 3 71008430 71008430 C T FOXP1 Missense_Mutation p.E670K 0.24 deleterious_low_confidence(0) benign(0.359) TCGA-D9-A1JW-06 3 74347335 74347335 G A CNTN3 Missense_Mutation p.P725L 0.42 deleterious(0.04) probably_damaging(0.957) TCGA-D9-A1JW-06 3 75986676 75986676 G A ROBO2 Missense_Mutation p.R11K 0.15 tolerated_low_confidence(0.95) unknown(0) TCGA-D9-A1JW-06 3 78656102 78656102 G A ROBO1 Missense_Mutation p.P1509S 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A1JW-06 3 8794707 8794707 G A OXTR Missense_Mutation p.R376C 0.28 deleterious(0.01) unknown(0) TCGA-D9-A1JW-06 3 97983676 97983676 C T OR5H6 Missense_Mutation p.T183I 0.39 deleterious(0.03) benign(0.219) TCGA-D9-A1JW-06 4 100266412 100266412 T A ADH1C Missense_Mutation p.I91F 0.35 benign(0.17) TCGA-D9-A1JW-06 4 100443719 100443719 G A C4orf17 Missense_Mutation p.G64R 0.29 tolerated(0.1) possibly_damaging(0.822) TCGA-D9-A1JW-06 4 110791013 110791013 C T LRIT3 Nonsense_Mutation p.Q370* 0.28 TCGA-D9-A1JW-06 4 11400857 11400857 C T HS3ST1 Missense_Mutation p.R258Q 0.26 deleterious(0.03) probably_damaging(0.93) TCGA-D9-A1JW-06 4 115767114 115767114 A T NDST4 Missense_Mutation p.S660R 0.21 tolerated(0.1) benign(0.097) TCGA-D9-A1JW-06 4 115792086 115792086 A T NDST4 Missense_Mutation p.H519Q 0.29 deleterious(0) possibly_damaging(0.901) TCGA-D9-A1JW-06 4 123097030 123097030 C T KIAA1109 Missense_Mutation p.R107W 0.32 probably_damaging(0.983) TCGA-D9-A1JW-06 4 126238981 126238981 C T FAT4 Missense_Mutation p.P472L 0.28 probably_damaging(0.953) TCGA-D9-A1JW-06 4 146072028 146072028 G A OTUD4 Missense_Mutation p.P268L 0.38 deleterious(0) benign(0.167) TCGA-D9-A1JW-06 4 153247254 153247254 A C FBXW7 Missense_Mutation p.S516R 0.17 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 4 153802227 153802227 T C ARFIP1 Missense_Mutation p.I175T 0.22 deleterious(0) benign(0.201) TCGA-D9-A1JW-06 4 154510071 154510071 C T KIAA0922 Silent p.L528L 0.29 TCGA-D9-A1JW-06 4 156289808 156289808 G A MAP9 Missense_Mutation p.S213F 0.28 tolerated(0.09) benign(0.017) TCGA-D9-A1JW-06 4 162306931 162306931 C T FSTL5 Missense_Mutation p.G838R 0.33 deleterious(0) probably_damaging(0.994) TCGA-D9-A1JW-06 4 164050415 164050415 G A NAF1 Silent p.F373F 0.28 TCGA-D9-A1JW-06 4 167656203 167656203 C T SPOCK3 Missense_Mutation p.D394N 0.38 tolerated_low_confidence(0.18) probably_damaging(0.999) TCGA-D9-A1JW-06 4 173150813 173150813 C T GALNTL6 Missense_Mutation p.P49S 0.31 tolerated(0.39) benign(0.001) TCGA-D9-A1JW-06 4 175223258 175223258 A T CEP44 Missense_Mutation p.Y53F 0.20 tolerated(0.19) benign(0.066) TCGA-D9-A1JW-06 4 175565126 175565126 G A GLRA3 Silent p.G402G 0.28 TCGA-D9-A1JW-06 4 177650815 177650815 C T VEGFC Nonsense_Mutation p.W78* 0.18 TCGA-D9-A1JW-06 4 183549824 183549824 G A TENM3 Missense_Mutation p.G257E 0.38 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D9-A1JW-06 4 183594300 183594300 C T TENM3 Silent p.F418F 0.28 TCGA-D9-A1JW-06 4 183651361 183651361 C T TENM3 Missense_Mutation p.S865F 0.24 deleterious(0.01) possibly_damaging(0.831) TCGA-D9-A1JW-06 4 183651436 183651436 C T TENM3 Missense_Mutation p.P890L 0.26 tolerated(0.06) possibly_damaging(0.908) TCGA-D9-A1JW-06 4 184931088 184931088 C T STOX2 Missense_Mutation p.S366F 0.17 deleterious(0.02) benign(0.299) TCGA-D9-A1JW-06 4 185012324 185012324 G A ENPP6 3'UTR 0.21 TCGA-D9-A1JW-06 4 185309930 185309930 G A IRF2 Silent p.A344A 0.24 TCGA-D9-A1JW-06 4 188924723 188924723 G A ZFP42 Silent p.K254K 0.23 TCGA-D9-A1JW-06 4 189063465 189063465 C T TRIML1 Silent p.F188F 0.31 TCGA-D9-A1JW-06 4 22446706 22446706 T C GPR125 Missense_Mutation p.H199R 0.43 tolerated(0.1) benign(0.035) TCGA-D9-A1JW-06 4 24838983 24838983 C G CCDC149 Missense_Mutation p.E177Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 4 26483489 26483489 G A CCKAR Missense_Mutation p.S353F 0.29 deleterious(0) probably_damaging(0.953) TCGA-D9-A1JW-06 4 36212084 36212084 G A ARAP2 Missense_Mutation p.P472L 0.26 deleterious(0) probably_damaging(0.92) TCGA-D9-A1JW-06 4 37847295 37847295 T G PGM2 Missense_Mutation p.I317M 0.28 deleterious(0.04) possibly_damaging(0.739) TCGA-D9-A1JW-06 4 39276558 39276558 G A WDR19 Silent p.K1232K 0.36 TCGA-D9-A1JW-06 4 4322723 4322723 C T ZBTB49 Nonsense_Mutation p.Q660* 0.26 TCGA-D9-A1JW-06 4 47939215 47939215 C T CNGA1 Silent p.K501K 0.19 TCGA-D9-A1JW-06 4 48073661 48073661 C T TXK Missense_Mutation p.G463E 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 4 54140030 54140030 C T SCFD2 Nonsense_Mutation p.W425* 0.36 TCGA-D9-A1JW-06 4 55955863 55955863 G A KDR Missense_Mutation p.S1100F 0.27 deleterious(0) probably_damaging(0.998) TCGA-D9-A1JW-06 4 5667321 5667321 G A EVC2 Missense_Mutation p.S309F 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 4 57796419 57796419 C T REST Silent p.S465S 0.24 TCGA-D9-A1JW-06 4 62903526 62903526 G A LPHN3 Silent p.G1155G 0.28 TCGA-D9-A1JW-06 4 69403409 69403409 G A UGT2B17 Silent p.I509I 0.60 TCGA-D9-A1JW-06 4 69683807 69683807 C T UGT2B10 Missense_Mutation p.S260F 0.26 deleterious(0.01) benign(0.013) TCGA-D9-A1JW-06 4 71507955 71507955 G A ENAM Missense_Mutation p.G271E 0.35 tolerated(0.06) probably_damaging(0.961) TCGA-D9-A1JW-06 4 74607292 74607292 G A IL8 Missense_Mutation p.R33K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 4 74853765 74853765 G A PPBP Missense_Mutation p.A19V 0.27 tolerated(1) benign(0.001) TCGA-D9-A1JW-06 4 77317556 77317556 G A CCDC158 Missense_Mutation p.P52S 0.28 tolerated(0.2) probably_damaging(0.994) TCGA-D9-A1JW-06 4 79188573 79188573 T C FRAS1 Missense_Mutation p.V323A 0.21 benign(0.37) TCGA-D9-A1JW-06 4 79420968 79420968 G A FRAS1 Missense_Mutation p.R3070K 0.29 benign(0.05) TCGA-D9-A1JW-06 4 7968700 7968700 G A ABLIM2 3'UTR 0.30 TCGA-D9-A1JW-06 4 8229510 8229510 G A SH3TC1 Missense_Mutation p.D697N 0.28 tolerated(0.25) benign(0.222) TCGA-D9-A1JW-06 4 8229539 8229539 C T SH3TC1 Silent p.L706L 0.24 TCGA-D9-A1JW-06 4 83905883 83905883 G A LIN54 Missense_Mutation p.P39S 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D9-A1JW-06 4 85569815 85569815 C T CDS1 Silent p.I454I 0.15 TCGA-D9-A1JW-06 4 88534234 88534234 C T DSPP Missense_Mutation p.S299L 0.28 probably_damaging(0.999) TCGA-D9-A1JW-06 4 96761632 96761632 C T PDHA2 Missense_Mutation p.H111Y 0.24 tolerated(0.31) probably_damaging(0.995) TCGA-D9-A1JW-06 4 98865133 98865133 C T STPG2 Missense_Mutation p.G320E 0.33 tolerated(0.62) benign(0.004) TCGA-D9-A1JW-06 4 98865158 98865158 C T STPG2 Missense_Mutation p.E312K 0.18 tolerated(0.92) benign(0) TCGA-D9-A1JW-06 5 101834496 101834496 C T SLCO6A1 Missense_Mutation p.G18E 0.49 tolerated(1) benign(0) TCGA-D9-A1JW-06 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.16 TCGA-D9-A1JW-06 5 134785124 134785124 C T TIFAB 3'UTR 0.45 TCGA-D9-A1JW-06 5 137088949 137088949 C T HNRNPA0 Silent p.K269K 0.40 TCGA-D9-A1JW-06 5 137517384 137517384 T C KIF20A Silent p.I114I 0.23 TCGA-D9-A1JW-06 5 13777445 13777445 G A DNAH5 Silent p.L2991L 0.16 TCGA-D9-A1JW-06 5 13794115 13794115 G A DNAH5 Missense_Mutation p.P2647L 0.42 possibly_damaging(0.908) TCGA-D9-A1JW-06 5 138208577 138208577 G A LRRTM2 3'UTR 0.55 TCGA-D9-A1JW-06 5 13885137 13885137 G A DNAH5 Missense_Mutation p.R982C 0.17 possibly_damaging(0.689) TCGA-D9-A1JW-06 5 140166494 140166494 G A PCDHA1 Missense_Mutation p.E207K 0.50 tolerated_low_confidence(0.05) benign(0.068) TCGA-D9-A1JW-06 5 140175770 140175770 G A PCDHA2 Silent p.L407L 0.44 TCGA-D9-A1JW-06 5 140188600 140188600 G A PCDHA4 Missense_Mutation p.E610K 0.49 deleterious_low_confidence(0) benign(0.284) TCGA-D9-A1JW-06 5 140203175 140203175 G A PCDHA5 Nonsense_Mutation p.W605* 0.25 TCGA-D9-A1JW-06 5 140237491 140237491 C T PCDHA10 Missense_Mutation p.P620S 0.17 deleterious_low_confidence(0.01) benign(0.299) TCGA-D9-A1JW-06 5 140308247 140308247 T C PCDHAC1 Silent p.S590S 0.50 TCGA-D9-A1JW-06 5 140720207 140720207 G A PCDHGA2 Missense_Mutation p.D557N 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.699) TCGA-D9-A1JW-06 5 149314188 149314188 C T PDE6A Missense_Mutation p.A190T 0.19 deleterious(0) probably_damaging(0.991) TCGA-D9-A1JW-06 5 149511573 149511573 C T PDGFRB Silent p.E404E 0.15 TCGA-D9-A1JW-06 5 150946767 150946767 C T FAT2 Missense_Mutation p.D576N 0.50 benign(0.436) TCGA-D9-A1JW-06 5 150947511 150947511 C T FAT2 Missense_Mutation p.G328R 0.39 probably_damaging(1) TCGA-D9-A1JW-06 5 151784584 151784584 C T NMUR2 Missense_Mutation p.E31K 0.26 tolerated(0.2) benign(0.285) TCGA-D9-A1JW-06 5 156589960 156589960 G A FAM71B Missense_Mutation p.P439L 0.48 tolerated(0.36) benign(0.084) TCGA-D9-A1JW-06 5 156590543 156590543 C T FAM71B Missense_Mutation p.A245T 0.48 tolerated(0.78) benign(0.005) TCGA-D9-A1JW-06 5 156770374 156770374 C T FNDC9 Silent p.T57T 0.42 TCGA-D9-A1JW-06 5 157232931 157232931 C T CLINT1 Silent p.G295G 0.26 TCGA-D9-A1JW-06 5 176314516 176314516 G A HK3 Silent p.L512L 0.22 TCGA-D9-A1JW-06 5 180057580 180057580 G A FLT4 Silent p.A125A 0.16 TCGA-D9-A1JW-06 5 180432492 180432492 C T BTNL3 Missense_Mutation p.H341Y 0.22 deleterious(0) probably_damaging(0.966) TCGA-D9-A1JW-06 5 19473355 19473355 C T CDH18 Missense_Mutation p.E785K 0.14 tolerated(0.08) benign(0.003) TCGA-D9-A1JW-06 5 26890578 26890578 G A CDH9 Missense_Mutation p.S450L 0.16 tolerated(0.17) benign(0.037) TCGA-D9-A1JW-06 5 36039718 36039718 G A UGT3A2 Silent p.I312I 0.41 TCGA-D9-A1JW-06 5 37006515 37006515 T A NIPBL Silent p.V1304V 0.42 TCGA-D9-A1JW-06 5 37107844 37107844 G A C5orf42 Missense_Mutation p.P3152S 0.43 tolerated(0.19) benign(0.076) TCGA-D9-A1JW-06 5 41018861 41018861 G A MROH2B Silent p.L869L 0.13 TCGA-D9-A1JW-06 5 41181522 41181522 C T C6 Missense_Mutation p.R289K 0.13 tolerated(1) benign(0) TCGA-D9-A1JW-06 5 43536967 43536967 G A PAIP1 Missense_Mutation p.S309F 0.15 deleterious(0) probably_damaging(0.936) TCGA-D9-A1JW-06 5 43628344 43628344 C T NNT Silent p.P273P 0.18 TCGA-D9-A1JW-06 5 44305142 44305142 C T FGF10 Silent p.R194R 0.16 TCGA-D9-A1JW-06 5 45267329 45267329 G A HCN1 Missense_Mutation p.R549C 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 5 45645701 45645701 C T HCN1 Nonsense_Mutation p.W145* 0.40 TCGA-D9-A1JW-06 5 54416372 54416372 C T CDC20B Missense_Mutation p.D408N 0.20 tolerated(1) benign(0.007) TCGA-D9-A1JW-06 5 59899378 59899378 G A DEPDC1B Missense_Mutation p.S361F 0.24 deleterious(0) probably_damaging(0.984) TCGA-D9-A1JW-06 5 60448757 60448757 G A NDUFAF2 Missense_Mutation p.R162Q 0.54 tolerated(1) benign(0) TCGA-D9-A1JW-06 5 61833062 61833062 C T IPO11 Silent p.S772S 0.55 TCGA-D9-A1JW-06 5 64906724 64906724 G A TRIM23 Silent p.I264I 0.45 TCGA-D9-A1JW-06 5 68689179 68689179 A T RAD17 Splice_Site p.X437_splice 0.22 TCGA-D9-A1JW-06 5 72470082 72470082 A G TMEM174 3'UTR 0.52 TCGA-D9-A1JW-06 5 82948507 82948507 A G HAPLN1 Silent p.I79I 0.23 TCGA-D9-A1JW-06 5 89990391 89990391 G A GPR98 Silent p.V2606V 0.50 TCGA-D9-A1JW-06 5 90046372 90046372 C T GPR98 Missense_Mutation p.S3660L 0.40 possibly_damaging(0.879) TCGA-D9-A1JW-06 5 90074267 90074267 G A GPR98 Silent p.E4230E 0.33 TCGA-D9-A1JW-06 5 90074268 90074268 G A GPR98 Missense_Mutation p.E4231K 0.33 possibly_damaging(0.636) TCGA-D9-A1JW-06 5 9630007 9630007 G A TAS2R1 Silent p.L46L 0.21 TCGA-D9-A1JW-06 6 106547271 106547271 G A PRDM1 Missense_Mutation p.E170K 0.36 deleterious(0) possibly_damaging(0.585) TCGA-D9-A1JW-06 6 108218933 108218933 A G SEC63 Silent p.L454L 0.41 TCGA-D9-A1JW-06 6 11191368 11191368 G A NEDD9 Missense_Mutation p.P245L 0.37 deleterious(0) benign(0.342) TCGA-D9-A1JW-06 6 112471788 112471788 C T LAMA4 Missense_Mutation p.G700R 0.40 tolerated(0.07) probably_damaging(0.964) TCGA-D9-A1JW-06 6 116938061 116938061 C T RSPH4A Missense_Mutation p.S92F 0.28 tolerated_low_confidence(0.69) benign(0.004) TCGA-D9-A1JW-06 6 117709079 117709079 G A ROS1 Silent p.F626F 0.37 TCGA-D9-A1JW-06 6 123377146 123377146 G A CLVS2 Missense_Mutation p.E291K 0.25 tolerated(0.31) benign(0.01) TCGA-D9-A1JW-06 6 125397990 125397990 G A RNF217 Missense_Mutation p.R198Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-D9-A1JW-06 6 130505278 130505278 G A SAMD3 Silent p.H208H 0.32 TCGA-D9-A1JW-06 6 132641827 132641827 C T MOXD1 Missense_Mutation p.G436R 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 6 142399866 142399866 G A NMBR Silent p.I199I 0.33 TCGA-D9-A1JW-06 6 15615570 15615570 C T DTNBP1 Missense_Mutation p.C139Y 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 6 168440813 168440813 C T KIF25 Missense_Mutation p.P188L 0.32 deleterious(0.03) probably_damaging(0.959) TCGA-D9-A1JW-06 6 24146056 24146056 G A NRSN1 Missense_Mutation p.R157Q 0.14 deleterious(0.05) possibly_damaging(0.731) TCGA-D9-A1JW-06 6 25862158 25862158 C T SLC17A3 Missense_Mutation p.G135R 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-D9-A1JW-06 6 26197197 26197197 C T HIST1H3D Silent p.Q94Q 0.39 TCGA-D9-A1JW-06 6 2784557 2784557 G T WRNIP1 Splice_Site p.X548_splice 0.41 TCGA-D9-A1JW-06 6 28541180 28541180 G A SCAND3 Missense_Mutation p.P829L 0.16 tolerated_low_confidence(0.72) probably_damaging(0.997) TCGA-D9-A1JW-06 6 2900804 2900804 G A SERPINB9 Silent p.R14R 0.36 TCGA-D9-A1JW-06 6 29141402 29141402 G A OR2J2 5'UTR 0.23 TCGA-D9-A1JW-06 6 292544 292544 G A DUSP22 Missense_Mutation p.G2E 0.14 deleterious(0) possibly_damaging(0.857) TCGA-D9-A1JW-06 6 31097384 31097384 C T PSORS1C1 5'UTR 0.43 TCGA-D9-A1JW-06 6 31133727 31133727 C T POU5F1 Missense_Mutation p.G168E 0.47 deleterious(0) probably_damaging(0.958) TCGA-D9-A1JW-06 6 31914340 31914340 G A CFB Silent p.L587L 0.20 TCGA-D9-A1JW-06 6 32182030 32182030 G A NOTCH4 Missense_Mutation p.S675F 0.22 tolerated(0.06) probably_damaging(0.986) TCGA-D9-A1JW-06 6 33385890 33385890 A G CUTA Missense_Mutation p.F25L 0.45 tolerated_low_confidence(0.13) benign(0.003) TCGA-D9-A1JW-06 6 34008042 34008042 C T GRM4 Silent p.G473G 0.26 TCGA-D9-A1JW-06 6 34937853 34937853 C T ANKS1A Silent p.Y115Y 0.39 TCGA-D9-A1JW-06 6 35088743 35088743 C T TCP11 Missense_Mutation p.E233K 0.26 deleterious(0) probably_damaging(0.99) TCGA-D9-A1JW-06 6 35477635 35477635 C T TULP1 Silent p.E190E 0.21 TCGA-D9-A1JW-06 6 38142888 38142888 G A BTBD9 Missense_Mutation p.S571L 0.19 tolerated(0.32) benign(0.002) TCGA-D9-A1JW-06 6 401488 401488 C T IRF4 Silent p.S270S 0.14 TCGA-D9-A1JW-06 6 41168873 41168873 G A TREML2 5'UTR 0.38 TCGA-D9-A1JW-06 6 41658525 41658525 G A TFEB Missense_Mutation p.P115L 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A1JW-06 6 41658526 41658526 G A TFEB Missense_Mutation p.P115S 0.16 tolerated(0.2) probably_damaging(0.998) TCGA-D9-A1JW-06 6 42832733 42832733 C T GLTSCR1L Missense_Mutation p.A930V 0.21 tolerated_low_confidence(0.25) benign(0.002) TCGA-D9-A1JW-06 6 43146124 43146124 C T SRF Missense_Mutation p.P419S 0.16 tolerated(0.45) benign(0.046) TCGA-D9-A1JW-06 6 43417866 43417866 C T ABCC10 3'UTR 0.22 TCGA-D9-A1JW-06 6 43582080 43582080 C T POLH Missense_Mutation p.P643L 0.17 tolerated(0.31) benign(0.003) TCGA-D9-A1JW-06 6 43638552 43638552 G C RSPH9 Missense_Mutation p.G250A 0.36 tolerated_low_confidence(0.59) benign(0.031) TCGA-D9-A1JW-06 6 43638553 43638553 G A RSPH9 Silent p.G250G 0.37 TCGA-D9-A1JW-06 6 44413591 44413591 C T CDC5L Missense_Mutation p.P764L 0.17 deleterious(0.04) benign(0.007) TCGA-D9-A1JW-06 6 46659159 46659159 T C TDRD6 Silent p.C1098C 0.19 TCGA-D9-A1JW-06 6 47682221 47682221 C T GPR115 Silent p.L414L 0.30 TCGA-D9-A1JW-06 6 49403220 49403220 G A MUT Silent p.S691S 0.40 TCGA-D9-A1JW-06 6 52144196 52144196 G A MCM3 Missense_Mutation p.P290S 0.42 tolerated(0.14) possibly_damaging(0.643) TCGA-D9-A1JW-06 6 74497110 74497110 C T CD109 Missense_Mutation p.P831S 0.47 deleterious(0) benign(0.031) TCGA-D9-A1JW-06 6 7580938 7580938 G A DSP Silent p.A1505A 0.39 TCGA-D9-A1JW-06 6 76022214 76022214 G A FILIP1 Missense_Mutation p.P1112S 0.44 deleterious(0.01) possibly_damaging(0.835) TCGA-D9-A1JW-06 6 76412391 76412391 C T SENP6 Silent p.F773F 0.36 TCGA-D9-A1JW-06 6 76751689 76751689 G A IMPG1 Silent p.F74F 0.33 TCGA-D9-A1JW-06 6 84061792 84061792 A T ME1 Missense_Mutation p.D143E 0.38 tolerated(0.44) benign(0) TCGA-D9-A1JW-06 6 88757817 88757817 C T SPACA1 Missense_Mutation p.P65L 0.24 tolerated_low_confidence(0.27) benign(0.008) TCGA-D9-A1JW-06 7 102106487 102106487 C T LRWD1 Missense_Mutation p.P102S 0.38 tolerated(0.43) probably_damaging(0.952) TCGA-D9-A1JW-06 7 104782625 104782625 T A SRPK2 Missense_Mutation p.E458V 0.38 tolerated(0.16) possibly_damaging(0.447) TCGA-D9-A1JW-06 7 107674792 107674792 C T LAMB4 Splice_Site p.X1560_splice 0.31 TCGA-D9-A1JW-06 7 11446644 11446644 G A THSD7A Nonsense_Mutation p.Q1319* 0.33 TCGA-D9-A1JW-06 7 116339180 116339180 C T MET Silent p.L14L 0.15 TCGA-D9-A1JW-06 7 11676184 11676184 C T THSD7A Missense_Mutation p.E199K 0.38 deleterious(0.04) benign(0.41) TCGA-D9-A1JW-06 7 117864862 117864862 G T ANKRD7 5'UTR 0.44 TCGA-D9-A1JW-06 7 119914504 119914504 G A KCND2 5'UTR 0.27 TCGA-D9-A1JW-06 7 121960381 121960381 C T CADPS2 Silent p.R1243R 0.23 TCGA-D9-A1JW-06 7 126173342 126173342 G T GRM8 Silent p.I698I 0.36 TCGA-D9-A1JW-06 7 127238524 127238524 C T FSCN3 Silent p.P332P 0.33 TCGA-D9-A1JW-06 7 127253582 127253582 G A PAX4 Silent p.F181F 0.34 TCGA-D9-A1JW-06 7 128415840 128415840 C T OPN1SW Missense_Mutation p.R2K 0.40 tolerated(0.13) benign(0) TCGA-D9-A1JW-06 7 128481572 128481572 C T FLNC Missense_Mutation p.T691I 0.23 tolerated(0.06) benign(0.084) TCGA-D9-A1JW-06 7 129832632 129832632 G A TMEM209 Missense_Mutation p.P202L 0.11 tolerated(0.1) benign(0.04) TCGA-D9-A1JW-06 7 131060250 131060250 C G MKLN1 Missense_Mutation p.Q56E 0.31 deleterious(0.03) benign(0.323) TCGA-D9-A1JW-06 7 134896291 134896291 G A WDR91 5'Flank 0.19 TCGA-D9-A1JW-06 7 137293795 137293795 G A DGKI Missense_Mutation p.R362C 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A1JW-06 7 137792307 137792307 G A AKR1D1 Missense_Mutation p.R279K 0.25 deleterious(0.02) benign(0.067) TCGA-D9-A1JW-06 7 138429869 138429869 T A ATP6V0A4 Missense_Mutation p.N493Y 0.45 deleterious(0.01) possibly_damaging(0.857) TCGA-D9-A1JW-06 7 139164442 139164442 C T KLRG2 Silent p.Q312Q 0.19 TCGA-D9-A1JW-06 7 139229097 139229097 G A CLEC2L 3'UTR 0.39 TCGA-D9-A1JW-06 7 140453193 140453193 T G BRAF Missense_Mutation p.N581T 0.17 deleterious(0) possibly_damaging(0.798) TCGA-D9-A1JW-06 7 141629928 141629928 C T CLEC5A Silent p.R181R 0.19 TCGA-D9-A1JW-06 7 142428937 142428937 C T TRBV28 Silent p.S99S 0.61 TCGA-D9-A1JW-06 7 142448676 142448676 C T TRBV29-1 Silent p.F90F 0.36 TCGA-D9-A1JW-06 7 142499006 142499006 C T TRBC2 Missense_Mutation p.R95C 0.23 deleterious(0) probably_damaging(0.988) TCGA-D9-A1JW-06 7 143175380 143175380 C T TAS2R41 Silent p.L139L 0.24 TCGA-D9-A1JW-06 7 143632533 143632533 G A OR2F2 Missense_Mutation p.D70N 0.36 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JW-06 7 143771818 143771818 G A OR2A25 Missense_Mutation p.G169E 0.35 deleterious(0.02) possibly_damaging(0.493) TCGA-D9-A1JW-06 7 143827001 143827001 C T OR2A14 Missense_Mutation p.P266S 0.21 tolerated(0.48) benign(0.021) TCGA-D9-A1JW-06 7 143827081 143827081 G A OR2A14 Silent p.R292R 0.21 TCGA-D9-A1JW-06 7 143955903 143955903 G A OR2A7 Silent p.L273L 0.13 TCGA-D9-A1JW-06 7 144062264 144062264 G A ARHGEF5 Silent p.R834R 0.10 TCGA-D9-A1JW-06 7 147600726 147600726 C T CNTNAP2 Missense_Mutation p.P723L 0.29 deleterious(0.01) possibly_damaging(0.482) TCGA-D9-A1JW-06 7 148508726 148508726 G A EZH2 Silent p.Y646Y 0.18 TCGA-D9-A1JW-06 7 148508727 148508727 T A EZH2 Missense_Mutation p.Y646F 0.20 deleterious(0) probably_damaging(0.996) TCGA-D9-A1JW-06 7 148802070 148802070 C T ZNF425 Missense_Mutation p.G298E 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-D9-A1JW-06 7 148802164 148802164 C T ZNF425 Missense_Mutation p.V267I 0.16 tolerated(0.36) benign(0.145) TCGA-D9-A1JW-06 7 149500848 149500848 C T SSPO RNA 0.35 TCGA-D9-A1JW-06 7 150027718 150027718 C T ZBED6CL Silent p.T75T 0.24 TCGA-D9-A1JW-06 7 150325035 150325035 C T GIMAP6 Silent p.E217E 0.36 TCGA-D9-A1JW-06 7 150439530 150439530 G A GIMAP5 Silent p.G101G 0.16 TCGA-D9-A1JW-06 7 150554734 150554734 G A AOC1 Silent p.P392P 0.35 TCGA-D9-A1JW-06 7 17379741 17379741 T G AHR Missense_Mutation p.C764W 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.873) TCGA-D9-A1JW-06 7 23183515 23183515 C T KLHL7 Missense_Mutation p.R222C 0.28 deleterious(0) probably_damaging(0.99) TCGA-D9-A1JW-06 7 27140233 27140233 G A HOXA2 3'UTR 0.30 TCGA-D9-A1JW-06 7 30492619 30492619 G A NOD1 Silent p.G138G 0.31 TCGA-D9-A1JW-06 7 34888189 34888189 G A NPSR1 Silent p.V313V 0.29 TCGA-D9-A1JW-06 7 36616196 36616196 C T AOAH Silent p.Q335Q 0.16 TCGA-D9-A1JW-06 7 38781671 38781671 G A VPS41 Silent p.L725L 0.39 TCGA-D9-A1JW-06 7 44156480 44156480 G A POLD2 Missense_Mutation p.S239F 0.38 deleterious(0.05) possibly_damaging(0.905) TCGA-D9-A1JW-06 7 44467277 44467277 G A NUDCD3 Missense_Mutation p.P179S 0.21 tolerated(0.11) benign(0.021) TCGA-D9-A1JW-06 7 45104202 45104202 C T CCM2 Silent p.S164S 0.21 TCGA-D9-A1JW-06 7 50444296 50444296 G A IKZF1 Missense_Mutation p.E76K 0.27 tolerated(0.27) probably_damaging(0.952) TCGA-D9-A1JW-06 7 5567919 5567919 G A ACTB Silent p.S265S 0.29 TCGA-D9-A1JW-06 7 5567920 5567920 G C ACTB Missense_Mutation p.S265C 0.28 deleterious_low_confidence(0.03) benign(0) TCGA-D9-A1JW-06 7 55912390 55912390 G A SEPT14 Missense_Mutation p.S66L 0.36 deleterious(0) possibly_damaging(0.883) TCGA-D9-A1JW-06 7 57528444 57528444 T A ZNF716 Missense_Mutation p.F93I 0.25 deleterious(0.03) benign(0.178) TCGA-D9-A1JW-06 7 5966180 5966180 C T RSPH10B Splice_Site p.X811_splice 0.36 TCGA-D9-A1JW-06 7 71036340 71036340 C T WBSCR17 Missense_Mutation p.P345S 0.26 tolerated(0.41) benign(0.003) TCGA-D9-A1JW-06 7 73938417 73938417 C T GTF2IRD1 Silent p.F373F 0.19 TCGA-D9-A1JW-06 7 80285980 80285980 A G CD36 Missense_Mutation p.N82S 0.24 tolerated(0.27) benign(0.016) TCGA-D9-A1JW-06 7 81372669 81372669 C T HGF Missense_Mutation p.A289T 0.27 tolerated(0.53) benign(0.017) TCGA-D9-A1JW-06 7 8153540 8153540 G A ICA1 3'UTR 0.26 TCGA-D9-A1JW-06 7 82387889 82387889 C T PCLO 3'UTR 0.34 TCGA-D9-A1JW-06 7 82785576 82785576 C T PCLO Silent p.G127G 0.24 TCGA-D9-A1JW-06 7 87173569 87173569 G A ABCB1 Missense_Mutation p.S696F 0.34 deleterious(0) possibly_damaging(0.723) TCGA-D9-A1JW-06 7 89897659 89897659 G T C7orf63 Missense_Mutation p.D165Y 0.36 deleterious(0.01) possibly_damaging(0.643) TCGA-D9-A1JW-06 7 91651606 91651606 C T AKAP9 Missense_Mutation p.P1298S 0.24 benign(0.01) TCGA-D9-A1JW-06 7 91651607 91651607 C T AKAP9 Missense_Mutation p.P1298L 0.23 benign(0.006) TCGA-D9-A1JW-06 7 91691662 91691662 C T AKAP9 Missense_Mutation p.R1947C 0.25 probably_damaging(0.927) TCGA-D9-A1JW-06 7 92731571 92731571 G A SAMD9 Silent p.P1280P 0.32 TCGA-D9-A1JW-06 7 92731787 92731787 G T SAMD9 Silent p.I1208I 0.28 TCGA-D9-A1JW-06 7 92734480 92734480 G A SAMD9 Missense_Mutation p.P311S 0.28 deleterious(0.03) benign(0.248) TCGA-D9-A1JW-06 7 98608812 98608812 G A TRRAP Silent p.L3678L 0.21 TCGA-D9-A1JW-06 7 99447251 99447251 C T CYP3A43 Missense_Mutation p.P202S 0.30 deleterious(0.03) benign(0.08) TCGA-D9-A1JW-06 7 99955856 99955856 C T PILRB 5'UTR 0.30 TCGA-D9-A1JW-06 8 100887878 100887878 G A VPS13B Missense_Mutation p.R4018K 0.20 tolerated(0.29) benign(0.067) TCGA-D9-A1JW-06 8 100887879 100887879 G A VPS13B Silent p.R4018R 0.20 TCGA-D9-A1JW-06 8 106814685 106814685 C T ZFPM2 Missense_Mutation p.P792L 0.47 tolerated(0.07) benign(0.344) TCGA-D9-A1JW-06 8 113516054 113516054 G A CSMD3 Missense_Mutation p.S1683F 0.38 deleterious(0.03) probably_damaging(0.985) TCGA-D9-A1JW-06 8 124978497 124978497 G A FER1L6 Silent p.V117V 0.39 TCGA-D9-A1JW-06 8 124989720 124989720 G A FER1L6 Missense_Mutation p.E312K 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 8 125131862 125131862 C T FER1L6 Missense_Mutation p.S1802F 0.13 deleterious(0) probably_damaging(0.993) TCGA-D9-A1JW-06 8 131964190 131964190 C T ADCY8 Missense_Mutation p.D389N 0.35 deleterious(0.01) possibly_damaging(0.743) TCGA-D9-A1JW-06 8 135614003 135614003 G A ZFAT Silent p.P653P 0.43 TCGA-D9-A1JW-06 8 139165019 139165019 C T FAM135B Missense_Mutation p.E567K 0.19 deleterious(0.01) possibly_damaging(0.735) TCGA-D9-A1JW-06 8 143928000 143928000 C A GML Missense_Mutation p.P124H 0.16 deleterious(0.03) probably_damaging(0.964) TCGA-D9-A1JW-06 8 144695729 144695729 C T TSTA3 Missense_Mutation p.V259M 0.21 deleterious(0.01) benign(0.074) TCGA-D9-A1JW-06 8 145773559 145773559 G A ARHGAP39 Missense_Mutation p.P304L 0.43 deleterious(0) probably_damaging(0.973) TCGA-D9-A1JW-06 8 16032717 16032717 G A MSR1 Missense_Mutation p.P66S 0.45 tolerated(0.23) probably_damaging(1) TCGA-D9-A1JW-06 8 23709810 23709810 C T STC1 Missense_Mutation p.G69E 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 8 24304749 24304749 C T ADAM7 Silent p.T69T 0.37 TCGA-D9-A1JW-06 8 28608236 28608236 C T EXTL3 Silent p.S871S 0.41 TCGA-D9-A1JW-06 8 40389728 40389728 G A ZMAT4 3'UTR 0.44 TCGA-D9-A1JW-06 8 41615578 41615578 C T ANK1 Silent p.G68G 0.18 TCGA-D9-A1JW-06 8 53084745 53084745 G A ST18 Missense_Mutation p.H226Y 0.37 tolerated(0.18) benign(0.007) TCGA-D9-A1JW-06 8 54669124 54669124 C T ATP6V1H Missense_Mutation p.R423Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 8 56986630 56986630 G A RPS20 Missense_Mutation p.S31F 0.16 deleterious(0.02) possibly_damaging(0.845) TCGA-D9-A1JW-06 8 57224829 57224829 C T SDR16C5 Missense_Mutation p.D118N 0.37 deleterious(0.02) probably_damaging(0.963) TCGA-D9-A1JW-06 8 68165716 68165716 G T ARFGEF1 Missense_Mutation p.L890I 0.22 tolerated(0.27) benign(0.005) TCGA-D9-A1JW-06 8 68334778 68334778 C T CPA6 Silent p.V425V 0.25 TCGA-D9-A1JW-06 8 70536400 70536400 G A SULF1 Silent p.V606V 0.28 TCGA-D9-A1JW-06 8 70541836 70541836 G A SULF1 Missense_Mutation p.G736R 0.24 deleterious(0.03) benign(0.097) TCGA-D9-A1JW-06 8 70550829 70550829 T G SULF1 Missense_Mutation p.F793V 0.27 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 8 70591849 70591849 C T SLCO5A1 Silent p.R596R 0.22 TCGA-D9-A1JW-06 8 70667763 70667763 G A SLCO5A1 Missense_Mutation p.S385F 0.32 deleterious(0.03) benign(0.14) TCGA-D9-A1JW-06 8 71069449 71069449 G A NCOA2 Missense_Mutation p.P384L 0.25 deleterious(0.01) benign(0.003) TCGA-D9-A1JW-06 8 72123484 72123484 T A EYA1 Missense_Mutation p.E535D 0.26 tolerated(0.07) probably_damaging(0.937) TCGA-D9-A1JW-06 8 73848248 73848248 G A KCNB2 Missense_Mutation p.E220K 0.07 tolerated(0.84) benign(0.004) TCGA-D9-A1JW-06 8 74941192 74941192 G T LY96 Missense_Mutation p.G129V 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 8 77617118 77617118 C T ZFHX4 Silent p.F265F 0.39 TCGA-D9-A1JW-06 8 79645919 79645919 C T IL7 3'UTR 0.29 TCGA-D9-A1JW-06 8 80553665 80553665 G A STMN2 Silent p.L56L 0.21 TCGA-D9-A1JW-06 8 82371483 82371483 C T FABP9 Missense_Mutation p.E55K 0.36 tolerated(0.38) benign(0.244) TCGA-D9-A1JW-06 8 95264409 95264409 C T GEM Missense_Mutation p.D151N 0.39 tolerated(0.3) probably_damaging(0.999) TCGA-D9-A1JW-06 9 101806866 101806866 C T COL15A1 Missense_Mutation p.P864L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JW-06 9 101806876 101806876 C T COL15A1 Silent p.I867I 0.18 TCGA-D9-A1JW-06 9 113704152 113704152 C T LPAR1 Silent p.R114R 0.22 TCGA-D9-A1JW-06 9 113704153 113704153 C T LPAR1 Missense_Mutation p.R114Q 0.20 tolerated(0.29) benign(0.015) TCGA-D9-A1JW-06 9 114518604 114518604 C T C9orf84 Splice_Site p.X224_splice 0.19 TCGA-D9-A1JW-06 9 116299067 116299067 T A RGS3 Intron 0.24 TCGA-D9-A1JW-06 9 117108288 117108288 A G AKNA Silent p.S1172S 0.29 TCGA-D9-A1JW-06 9 117800600 117800600 T C TNC Missense_Mutation p.R1818G 0.22 tolerated(0.35) benign(0.09) TCGA-D9-A1JW-06 9 121929907 121929907 C A BRINP1 Nonsense_Mutation p.E581* 0.24 TCGA-D9-A1JW-06 9 123367702 123367702 C T MEGF9 Silent p.V525V 0.27 TCGA-D9-A1JW-06 9 125316346 125316346 C T OR1N2 Missense_Mutation p.P300S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A1JW-06 9 125377550 125377550 C T OR1Q1 Silent p.F178F 0.33 TCGA-D9-A1JW-06 9 129642541 129642541 C - ZBTB34 Frame_Shift_Del p.Y285Ifs*18 0.22 TCGA-D9-A1JW-06 9 130569923 130569923 G A FPGS Missense_Mutation p.D234N 0.13 tolerated(0.17) benign(0.327) TCGA-D9-A1JW-06 9 131088142 131088142 C T COQ4 Silent p.L128L 0.20 TCGA-D9-A1JW-06 9 131196510 131196510 T C CERCAM Splice_Site p.X444_splice 0.25 TCGA-D9-A1JW-06 9 131600580 131600580 G A CCBL1 Missense_Mutation p.P90S 0.23 deleterious(0.03) possibly_damaging(0.762) TCGA-D9-A1JW-06 9 131830145 131830145 C T FAM73B Nonsense_Mutation p.R422* 0.35 TCGA-D9-A1JW-06 9 132641892 132641892 C T USP20 Silent p.V851V 0.30 TCGA-D9-A1JW-06 9 136302870 136302870 G A ADAMTS13 Silent p.G479G 0.14 TCGA-D9-A1JW-06 9 136501608 136501608 G A DBH Missense_Mutation p.G39S 0.16 tolerated(0.13) benign(0.165) TCGA-D9-A1JW-06 9 136501609 136501609 G A DBH Missense_Mutation p.G39D 0.17 deleterious(0.01) possibly_damaging(0.842) TCGA-D9-A1JW-06 9 137593132 137593132 G A COL5A1 Missense_Mutation p.G203S 0.29 probably_damaging(1) TCGA-D9-A1JW-06 9 138438731 138438731 G A OBP2A Silent p.G60G 0.22 TCGA-D9-A1JW-06 9 138439043 138439043 C T OBP2A Nonsense_Mutation p.Q76* 0.16 TCGA-D9-A1JW-06 9 139265382 139265382 C T CARD9 Missense_Mutation p.E180K 0.39 deleterious(0) benign(0.044) TCGA-D9-A1JW-06 9 139371356 139371356 G A SEC16A Missense_Mutation p.P238S 0.23 tolerated(0.06) benign(0.083) TCGA-D9-A1JW-06 9 139410075 139410075 G A NOTCH1 Missense_Mutation p.T588I 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-D9-A1JW-06 9 140991040 140991040 G A CACNA1B Nonsense_Mutation p.W1733* 0.18 TCGA-D9-A1JW-06 9 18928076 18928076 G A FAM154A Nonsense_Mutation p.Q467* 0.26 TCGA-D9-A1JW-06 9 20363417 20363417 G A MLLT3 Intron 0.37 TCGA-D9-A1JW-06 9 33056197 33056197 G A SMU1 Missense_Mutation p.R346C 0.34 deleterious(0.03) benign(0.4) TCGA-D9-A1JW-06 9 33798555 33798555 C T PRSS3 Missense_Mutation p.P233S 0.19 deleterious(0.04) possibly_damaging(0.885) TCGA-D9-A1JW-06 9 34506686 34506686 C T DNAI1 Silent p.F375F 0.28 TCGA-D9-A1JW-06 9 35310610 35310610 C T UNC13B Missense_Mutation p.S303F 0.20 tolerated_low_confidence(0.12) benign(0.011) TCGA-D9-A1JW-06 9 35376085 35376085 C T UNC13B Missense_Mutation p.P477S 0.33 deleterious(0) probably_damaging(0.987) TCGA-D9-A1JW-06 9 35700339 35700339 G A TLN1 Missense_Mutation p.S2170F 0.16 tolerated(0.19) possibly_damaging(0.589) TCGA-D9-A1JW-06 9 35869662 35869662 G A OR13J1 Missense_Mutation p.A246V 0.24 deleterious(0) possibly_damaging(0.755) TCGA-D9-A1JW-06 9 43737504 43737504 G A CNTNAP3B Missense_Mutation p.R125Q 0.32 tolerated(1) benign(0.003) TCGA-D9-A1JW-06 9 5922502 5922502 G T KIAA2026 Missense_Mutation p.P1165Q 0.33 deleterious(0) possibly_damaging(0.667) TCGA-D9-A1JW-06 9 73151069 73151069 C T TRPM3 Missense_Mutation p.E1642K 0.27 tolerated_low_confidence(0.07) benign(0.423) TCGA-D9-A1JW-06 9 73240410 73240410 C T TRPM3 Intron 0.19 TCGA-D9-A1JW-06 9 79323993 79323993 G A PRUNE2 Missense_Mutation p.S1066F 0.24 deleterious(0) possibly_damaging(0.875) TCGA-D9-A1JW-06 9 79824434 79824434 C T VPS13A Missense_Mutation p.R161C 0.45 deleterious(0) probably_damaging(0.983) TCGA-D9-A1JW-06 9 88211343 88211343 G A AGTPBP1 Missense_Mutation p.S746L 0.19 deleterious(0) possibly_damaging(0.843) TCGA-D9-A1JW-06 9 90401769 90401769 G A CTSL3P RNA 0.25 TCGA-D9-A1JW-06 9 94486585 94486585 C T ROR2 Missense_Mutation p.E731K 0.25 deleterious(0) probably_damaging(0.939) TCGA-D9-A1JW-06 9 94538090 94538090 C T ROR2 Silent p.E36E 0.17 TCGA-D9-A1JW-06 9 95077282 95077282 G A NOL8 Missense_Mutation p.A542V 0.12 deleterious(0) benign(0.034) TCGA-D9-A1JW-06 9 99013747 99013747 G A HSD17B3 Missense_Mutation p.P136S 0.13 tolerated(0.61) benign(0.314) TCGA-D9-A1JW-06 X 107976623 107976623 A G IRS4 Silent p.R984R 0.53 TCGA-D9-A1JW-06 X 108708565 108708565 G A GUCY2F Missense_Mutation p.P280S 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-D9-A1JW-06 X 111090650 111090650 A T TRPC5 Silent p.R464R 0.67 TCGA-D9-A1JW-06 X 117043518 117043518 G A KLHL13 Missense_Mutation p.S374L 0.14 tolerated(0.32) benign(0.016) TCGA-D9-A1JW-06 X 123518401 123518401 G A TENM1 Missense_Mutation p.A2127V 0.70 tolerated(0.49) benign(0.009) TCGA-D9-A1JW-06 X 12712545 12712545 C T FRMPD4 Missense_Mutation p.P302L 0.41 tolerated(0.11) possibly_damaging(0.791) TCGA-D9-A1JW-06 X 130408775 130408775 G A IGSF1 Silent p.C1188C 0.38 TCGA-D9-A1JW-06 X 134856796 134856796 G A CT45A1 3'UTR 0.06 TCGA-D9-A1JW-06 X 135427812 135427812 C T GPR112 Silent p.F649F 0.36 TCGA-D9-A1JW-06 X 140785720 140785720 C T SPANXD Missense_Mutation p.E66K 0.58 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A1JW-06 X 140993849 140993849 G A MAGEC1 Missense_Mutation p.R220K 0.28 tolerated_low_confidence(0.11) benign(0) TCGA-D9-A1JW-06 X 140994400 140994400 C T MAGEC1 Missense_Mutation p.P404S 0.50 tolerated_low_confidence(0.09) benign(0) TCGA-D9-A1JW-06 X 140994883 140994883 C T MAGEC1 Missense_Mutation p.P565S 0.51 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-D9-A1JW-06 X 142596803 142596803 T C SPANXN3 Silent p.V89V 0.62 TCGA-D9-A1JW-06 X 150844505 150844505 G A PASD1 Missense_Mutation p.D738N 0.55 tolerated_low_confidence(0.57) benign(0) TCGA-D9-A1JW-06 X 151821087 151821087 C T GABRQ Silent p.L414L 0.59 TCGA-D9-A1JW-06 X 151935967 151935967 C T MAGEA3 Missense_Mutation p.G67E 0.64 tolerated(0.95) possibly_damaging(0.708) TCGA-D9-A1JW-06 X 155004002 155004002 C T SPRY3 Missense_Mutation p.P157S 0.22 deleterious(0.01) benign(0.029) TCGA-D9-A1JW-06 X 155239703 155239703 G A IL9R Missense_Mutation p.E399K 0.26 deleterious(0.03) possibly_damaging(0.49) TCGA-D9-A1JW-06 X 15646196 15646196 C T TMEM27 Missense_Mutation p.M189I 0.62 tolerated(0.45) benign(0.001) TCGA-D9-A1JW-06 X 24521544 24521544 C T PDK3 Missense_Mutation p.P141S 0.48 tolerated(0.09) benign(0.016) TCGA-D9-A1JW-06 X 3239114 3239114 C T MXRA5 Missense_Mutation p.E1538K 0.61 tolerated(0.07) benign(0.039) TCGA-D9-A1JW-06 X 34148746 34148746 A G FAM47A Silent p.S550S 0.51 TCGA-D9-A1JW-06 X 34149812 34149812 G A FAM47A Missense_Mutation p.P195L 0.49 tolerated(0.22) probably_damaging(0.992) TCGA-D9-A1JW-06 X 36007508 36007508 G A CXorf22 Missense_Mutation p.G929E 0.40 deleterious(0.05) probably_damaging(1) TCGA-D9-A1JW-06 X 48116699 48116699 C A SSX1 Missense_Mutation p.A8E 0.63 deleterious(0.03) probably_damaging(0.955) TCGA-D9-A1JW-06 X 49063311 49063311 G A CACNA1F Missense_Mutation p.S1757F 0.73 deleterious(0.01) benign(0) TCGA-D9-A1JW-06 X 69424330 69424330 G A DGAT2L6 Missense_Mutation p.G275S 0.65 deleterious(0) probably_damaging(1) TCGA-D9-A1JW-06 X 70146735 70146735 G A SLC7A3 Silent p.S481S 0.55 TCGA-D9-A1JW-06 X 70679093 70679093 C T TAF1 Intron 0.55 TCGA-D9-A1JW-06 X 72674248 72674248 G A CDX4 Missense_Mutation p.E228K 0.88 deleterious(0) probably_damaging(0.992) TCGA-D9-A1JW-06 X 73050952 73050952 G A XIST RNA 0.42 TCGA-D9-A1JW-06 X 73062381 73062381 C T XIST RNA 0.50 TCGA-D9-A1JW-06 X 73068291 73068291 G A XIST RNA 0.44 TCGA-D9-A1JW-06 X 73961064 73961064 C T KIAA2022 Missense_Mutation p.E1110K 0.50 deleterious(0.01) benign(0.281) TCGA-D9-A1JW-06 X 75003386 75003386 C T MAGEE2 Missense_Mutation p.E501K 0.49 deleterious(0) probably_damaging(0.98) TCGA-D9-A1JW-06 X 77301936 77301936 A G ATP7A Missense_Mutation p.N1458D 0.61 tolerated(0.18) possibly_damaging(0.67) TCGA-D9-A1JW-06 X 78426957 78426957 C T GPR174 Silent p.L151L 0.76 TCGA-D9-A1JX-06 10 125447678 125447678 G A GPR26 3'UTR 0.81 TCGA-D9-A1JX-06 10 15115236 15115236 C T OLAH 3'UTR 0.79 TCGA-D9-A1JX-06 10 72503388 72503388 G A ADAMTS14 Missense_Mutation p.R673H 0.84 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A1JX-06 10 7679252 7679252 G A ITIH5 Silent p.I197I 0.78 TCGA-D9-A1JX-06 11 121414407 121414407 C T SORL1 Silent p.I612I 0.69 TCGA-D9-A1JX-06 11 193805 193805 T C SCGB1C1 Missense_Mutation p.L50S 0.25 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JX-06 11 58949400 58949400 G A DTX4 Missense_Mutation p.V134I 0.58 tolerated(0.79) benign(0.002) TCGA-D9-A1JX-06 11 6007836 6007836 C T OR52L1 Missense_Mutation p.E109K 0.74 deleterious(0.03) benign(0.234) TCGA-D9-A1JX-06 11 619534 619534 C T CDHR5 Missense_Mutation p.M411I 0.64 deleterious(0) possibly_damaging(0.584) TCGA-D9-A1JX-06 11 64081732 64081732 G A ESRRA Missense_Mutation p.R155Q 0.67 deleterious(0) probably_damaging(0.996) TCGA-D9-A1JX-06 11 64813726 64813726 C T NAALADL1 Missense_Mutation p.R597H 0.08 tolerated(0.18) benign(0.002) TCGA-D9-A1JX-06 11 66114355 66114355 T C B3GNT1 Missense_Mutation p.N221S 0.57 tolerated(0.92) benign(0.029) TCGA-D9-A1JX-06 11 73008406 73008406 G A P2RY6 Silent p.A281A 0.80 TCGA-D9-A1JX-06 12 40153884 40153884 G A SLC2A13 Missense_Mutation p.R631W 0.34 deleterious(0) probably_damaging(0.927) TCGA-D9-A1JX-06 12 53687093 53687093 C T ESPL1 Silent p.D2066D 0.40 TCGA-D9-A1JX-06 12 55715176 55715176 A G OR6C1 Missense_Mutation p.R265G 0.39 tolerated_low_confidence(0.25) benign(0.044) TCGA-D9-A1JX-06 12 55726419 55726419 G A OR6C3 Silent p.%3D 0.44 TCGA-D9-A1JX-06 12 56490151 56490151 C T ERBB3 Intron 0.33 TCGA-D9-A1JX-06 12 57114409 57114409 G A NACA Missense_Mutation p.P302L 0.51 tolerated_low_confidence(0.86) benign(0) TCGA-D9-A1JX-06 12 70824511 70824511 C T KCNMB4 3'UTR 0.44 TCGA-D9-A1JX-06 12 70953102 70953102 G A PTPRB Intron 0.42 TCGA-D9-A1JX-06 12 7842749 7842749 G A GDF3 Missense_Mutation p.R274W 0.27 deleterious(0) probably_damaging(0.956) TCGA-D9-A1JX-06 14 105360689 105360689 G T CEP170B Missense_Mutation p.V1447L 0.34 deleterious(0.04) possibly_damaging(0.607) TCGA-D9-A1JX-06 14 20344745 20344745 T A OR4K2 Missense_Mutation p.F107I 0.28 tolerated(0.26) possibly_damaging(0.589) TCGA-D9-A1JX-06 14 23354167 23354167 C T REM2 Silent p.L130L 0.37 TCGA-D9-A1JX-06 14 71199392 71199392 G A MAP3K9 Silent p.P912P 0.36 TCGA-D9-A1JX-06 15 20489495 20489495 G A CHEK2P2 Intron 0.17 TCGA-D9-A1JX-06 15 20636430 20636430 G A HERC2P3 RNA 0.42 TCGA-D9-A1JX-06 15 24921352 24921352 C T NPAP1 Missense_Mutation p.S113F 0.33 deleterious(0.02) probably_damaging(0.93) TCGA-D9-A1JX-06 15 28259952 28259952 G A OCA2 Silent p.L338L 0.34 TCGA-D9-A1JX-06 15 31341666 31341666 C A TRPM1 Missense_Mutation p.R512L 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-D9-A1JX-06 15 34129149 34129149 C A RYR3 Missense_Mutation p.L3871I 0.08 benign(0.418) TCGA-D9-A1JX-06 15 41340455 41340455 G A INO80 Missense_Mutation p.P866S 0.37 tolerated(0.06) benign(0.162) TCGA-D9-A1JX-06 15 64701817 64701817 G C TRIP4 Missense_Mutation p.R278P 0.30 deleterious(0) probably_damaging(0.951) TCGA-D9-A1JX-06 15 74467597 74467597 A G ISLR Missense_Mutation p.E133G 0.23 deleterious(0.02) possibly_damaging(0.596) TCGA-D9-A1JX-06 15 79356834 79356834 T G RASGRF1 Missense_Mutation p.Q104P 0.40 deleterious(0) probably_damaging(0.988) TCGA-D9-A1JX-06 15 81181888 81181888 G A KIAA1199 Nonsense_Mutation p.W347* 0.45 TCGA-D9-A1JX-06 16 1129787 1129787 C T SSTR5 Missense_Mutation p.L307F 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A1JX-06 16 11967011 11967011 C T GSPT1 Missense_Mutation p.G627R 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A1JX-06 16 27460383 27460383 G A IL21R Missense_Mutation p.G466S 0.47 tolerated(0.81) benign(0.007) TCGA-D9-A1JX-06 16 4701967 4701967 C T MGRN1 Missense_Mutation p.P71S 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A1JX-06 16 4764059 4764059 C T ANKS3 Silent p.R234R 0.33 TCGA-D9-A1JX-06 16 4812275 4812275 G A ZNF500 Silent p.S220S 0.33 TCGA-D9-A1JX-06 16 49669816 49669816 C G ZNF423 Missense_Mutation p.D1083H 0.47 deleterious(0.01) possibly_damaging(0.467) TCGA-D9-A1JX-06 16 56448189 56448189 C G AMFR Missense_Mutation p.G108A 0.32 deleterious(0.02) probably_damaging(0.962) TCGA-D9-A1JX-06 16 56534820 56534820 G A BBS2 Missense_Mutation p.P448L 0.35 deleterious(0) possibly_damaging(0.71) TCGA-D9-A1JX-06 16 77369744 77369744 C T ADAMTS18 Missense_Mutation p.G590S 0.36 deleterious(0) probably_damaging(0.988) TCGA-D9-A1JX-06 17 12666901 12666901 C T MYOCD Silent p.F967F 0.42 TCGA-D9-A1JX-06 17 16703533 16703533 C T CCDC144A 3'UTR 0.27 TCGA-D9-A1JX-06 17 169211 169211 C T RPH3AL Silent p.K117K 0.32 TCGA-D9-A1JX-06 17 1703976 1703976 A T SMYD4 Missense_Mutation p.C238S 0.05 tolerated(0.64) benign(0.01) TCGA-D9-A1JX-06 17 21201758 21201758 C T MAP2K3 Missense_Mutation p.S28F 0.16 tolerated(0.07) benign(0.021) TCGA-D9-A1JX-06 17 21319907 21319907 G A KCNJ12 Missense_Mutation p.G418D 0.16 tolerated_low_confidence(0.06) benign(0.133) TCGA-D9-A1JX-06 17 36485889 36485889 C T GPR179 Missense_Mutation p.G1188E 0.40 tolerated(0.06) benign(0.132) TCGA-D9-A1JX-06 17 3661060 3661060 G A ITGAE Silent p.L320L 0.33 TCGA-D9-A1JX-06 17 37420601 37420601 G A FBXL20 Missense_Mutation p.R344C 0.37 deleterious(0.04) benign(0.083) TCGA-D9-A1JX-06 17 38953273 38953273 C T KRT28 Silent p.Q291Q 0.34 TCGA-D9-A1JX-06 17 39323982 39323982 G A KRTAP4-3 Missense_Mutation p.S148F 0.44 deleterious(0.02) unknown(0) TCGA-D9-A1JX-06 17 51901748 51901748 G A KIF2B Missense_Mutation p.E452K 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A1JX-06 17 60813510 60813510 C T MARCH10 Silent p.V573V 0.45 TCGA-D9-A1JX-06 17 61949737 61949737 C T CSH2 Intron 0.30 TCGA-D9-A1JX-06 17 80007607 80007607 G A RFNG Silent p.F258F 0.64 TCGA-D9-A1JX-06 17 8722442 8722442 C T PIK3R6 Missense_Mutation p.E651K 0.60 deleterious(0.01) benign(0.117) TCGA-D9-A1JX-06 18 12274218 12274218 G A CIDEA Missense_Mutation p.E153K 0.66 tolerated(0.05) probably_damaging(0.977) TCGA-D9-A1JX-06 18 72180891 72180891 C T CNDP2 Silent p.I280I 0.56 TCGA-D9-A1JX-06 19 12691555 12691555 G A ZNF490 Missense_Mutation p.P445L 0.35 deleterious(0.03) probably_damaging(0.996) TCGA-D9-A1JX-06 19 13915790 13915790 C T ZSWIM4 Silent p.H180H 0.33 TCGA-D9-A1JX-06 19 14159813 14159813 C T IL27RA Missense_Mutation p.P388S 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A1JX-06 19 14512267 14512267 C T CD97 Missense_Mutation p.R323W 0.39 deleterious(0) probably_damaging(0.915) TCGA-D9-A1JX-06 19 15758007 15758007 G A CYP4F3 Missense_Mutation p.G133E 0.37 deleterious(0.01) probably_damaging(1) TCGA-D9-A1JX-06 19 20188907 20188907 A G ZNF90 5'UTR 0.29 TCGA-D9-A1JX-06 19 20829089 20829089 G A ZNF626 Silent p.F42F 0.49 TCGA-D9-A1JX-06 19 22952742 22952742 C T ZNF99 Intron 0.31 TCGA-D9-A1JX-06 19 2717724 2717724 G A DIRAS1 Silent p.F27F 0.49 TCGA-D9-A1JX-06 19 3526174 3526174 C A FZR1 Missense_Mutation p.N84K 0.27 tolerated(0.42) benign(0.106) TCGA-D9-A1JX-06 19 3942103 3942103 C T NMRK2 Silent p.S175S 0.38 TCGA-D9-A1JX-06 19 39907045 39907045 C T PLEKHG2 Silent p.F179F 0.42 TCGA-D9-A1JX-06 19 42270186 42270186 G A CEACAM6 3'UTR 0.48 TCGA-D9-A1JX-06 19 43421985 43421985 C G PSG6 5'UTR 0.35 TCGA-D9-A1JX-06 19 49547454 49547454 G A CGB5 5'UTR 0.25 TCGA-D9-A1JX-06 19 49657030 49657030 C T HRC Missense_Mutation p.E489K 0.40 tolerated(0.53) benign(0.048) TCGA-D9-A1JX-06 19 49657031 49657031 C T HRC Silent p.K488K 0.42 TCGA-D9-A1JX-06 19 51960475 51960475 C T SIGLEC8 Nonsense_Mutation p.W248* 0.49 TCGA-D9-A1JX-06 19 54194211 54194211 C T MIR520A RNA 0.31 TCGA-D9-A1JX-06 19 55085550 55085550 T G LILRA2 Missense_Mutation p.S14R 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-D9-A1JX-06 19 55106156 55106156 G A LILRA1 Missense_Mutation p.A33T 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A1JX-06 19 55671284 55671284 G A DNAAF3 Silent p.L449L 0.34 TCGA-D9-A1JX-06 19 56953625 56953625 G A ZNF667 Missense_Mutation p.H247Y 0.34 tolerated(0.05) benign(0.069) TCGA-D9-A1JX-06 19 58579100 58579100 G A ZNF135 Silent p.G440G 0.33 TCGA-D9-A1JX-06 19 7735189 7735189 C G RETN Missense_Mutation p.A94G 0.33 deleterious(0.02) benign(0.221) TCGA-D9-A1JX-06 19 855692 855692 C T ELANE Silent p.I165I 0.29 TCGA-D9-A1JX-06 19 8590433 8590433 C T MYO1F Silent p.K928K 0.32 TCGA-D9-A1JX-06 19 9056776 9056776 G A MUC16 Missense_Mutation p.P10224S 0.31 benign(0) TCGA-D9-A1JX-06 19 9061059 9061059 G T MUC16 Missense_Mutation p.A8796E 0.31 unknown(0) TCGA-D9-A1JX-06 19 9091639 9091639 G A MUC16 Missense_Mutation p.S59F 0.33 unknown(0) TCGA-D9-A1JX-06 19 9204477 9204477 G A OR1M1 Missense_Mutation p.R186Q 0.33 tolerated(0.14) benign(0.343) TCGA-D9-A1JX-06 1 102290780 102290780 C T OLFM3 Missense_Mutation p.E132K 0.35 deleterious(0.04) benign(0.062) TCGA-D9-A1JX-06 1 103400018 103400018 G A COL11A1 Missense_Mutation p.P1196L 0.38 unknown(0) TCGA-D9-A1JX-06 1 119964650 119964650 G A HSD3B2 Missense_Mutation p.G176S 0.46 deleterious(0.02) possibly_damaging(0.887) TCGA-D9-A1JX-06 1 147380718 147380718 G C GJA8 Silent p.V212V 0.34 TCGA-D9-A1JX-06 1 1635335 1635335 G A CDK11A Silent p.F613F 0.37 TCGA-D9-A1JX-06 1 204393826 204393826 C T PIK3C2B 3'UTR 0.65 TCGA-D9-A1JX-06 1 207697136 207697136 G A CR1 Missense_Mutation p.G223D 0.17 deleterious(0.01) probably_damaging(0.911) TCGA-D9-A1JX-06 1 210415734 210415734 C T SERTAD4 3'UTR 0.17 TCGA-D9-A1JX-06 1 212911991 212911991 G A NSL1 Missense_Mutation p.S202F 0.25 deleterious(0) benign(0.376) TCGA-D9-A1JX-06 1 214170487 214170487 T C PROX1 Silent p.S203S 0.62 TCGA-D9-A1JX-06 1 216173824 216173824 G A USH2A Silent p.L2136L 0.65 TCGA-D9-A1JX-06 1 22202148 22202148 G A HSPG2 Silent p.S1092S 0.47 TCGA-D9-A1JX-06 1 228004922 228004922 C T PRSS38 Silent p.I108I 0.14 TCGA-D9-A1JX-06 1 237057660 237057660 G C MTR Missense_Mutation p.E1070Q 0.08 tolerated(0.21) possibly_damaging(0.841) TCGA-D9-A1JX-06 1 241094032 241094032 C T RGS7 Missense_Mutation p.E124K 0.71 deleterious(0) probably_damaging(0.979) TCGA-D9-A1JX-06 1 248085250 248085250 C T OR2T8 Missense_Mutation p.R311C 0.11 deleterious(0.01) benign(0.224) TCGA-D9-A1JX-06 1 34677944 34677944 A G C1orf94 Missense_Mutation p.N553S 0.37 tolerated(0.29) benign(0.084) TCGA-D9-A1JX-06 1 40758246 40758246 T A ZMPSTE24 Missense_Mutation p.F445I 0.43 deleterious(0) possibly_damaging(0.69) TCGA-D9-A1JX-06 1 40758250 40758250 C T ZMPSTE24 Missense_Mutation p.P446L 0.41 deleterious(0) benign(0.401) TCGA-D9-A1JX-06 1 43649316 43649316 T C WDR65 Missense_Mutation p.F177L 0.34 tolerated(0.08) benign(0.283) TCGA-D9-A1JX-06 1 46650977 46650977 C A TSPAN1 Silent p.L225L 0.41 TCGA-D9-A1JX-06 1 47403680 47403680 G A CYP4A11 Silent p.L109L 0.34 TCGA-D9-A1JX-06 1 47571922 47571922 C T CYP4Z1 Missense_Mutation p.S397F 0.43 deleterious(0.04) probably_damaging(0.951) TCGA-D9-A1JX-06 1 84700931 84700931 A T PRKACB Missense_Mutation p.E380D 0.26 deleterious(0.02) benign(0.044) TCGA-D9-A1JX-06 1 87814442 87814442 C T LMO4 3'UTR 0.47 TCGA-D9-A1JX-06 1 94643583 94643583 A G ARHGAP29 Missense_Mutation p.L874S 0.37 deleterious(0) possibly_damaging(0.779) TCGA-D9-A1JX-06 20 1559278 1559278 C T RP4-576H24.4 Missense_Mutation p.G46R 0.56 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A1JX-06 20 30432534 30432534 G A FOXS1 Missense_Mutation p.S271L 0.69 tolerated(0.08) probably_damaging(0.977) TCGA-D9-A1JX-06 20 31894787 31894787 G A BPIFB1 Silent p.L463L 0.28 TCGA-D9-A1JX-06 20 33867751 33867751 G A EIF6 Silent p.P180P 0.21 TCGA-D9-A1JX-06 20 409647 409647 T C RBCK1 Missense_Mutation p.V454A 0.17 deleterious(0.04) benign(0.182) TCGA-D9-A1JX-06 20 55204556 55204556 G A TFAP2C 5'UTR 0.53 TCGA-D9-A1JX-06 20 61458603 61458603 G A COL9A3 Missense_Mutation p.G268D 0.45 deleterious(0.05) unknown(0) TCGA-D9-A1JX-06 21 10998311 10998311 C T TPTE RNA 0.13 TCGA-D9-A1JX-06 21 27840726 27840726 C T CYYR1 3'UTR 0.53 TCGA-D9-A1JX-06 22 18907078 18907078 C T PRODH Silent p.V379V 0.33 TCGA-D9-A1JX-06 22 26423568 26423568 C T MYO18B Missense_Mutation p.P2543L 0.60 deleterious(0.05) benign(0.014) TCGA-D9-A1JX-06 22 28192785 28192785 C T MN1 Silent p.E1249E 0.29 TCGA-D9-A1JX-06 2 103136335 103136335 G A SLC9A4 Missense_Mutation p.G580E 0.37 tolerated(0.92) benign(0.002) TCGA-D9-A1JX-06 2 113591100 113591100 C T IL1B Missense_Mutation p.R51Q 0.40 tolerated(1) benign(0.001) TCGA-D9-A1JX-06 2 133543152 133543152 C T NCKAP5 Missense_Mutation p.R411Q 0.33 tolerated(0.31) benign(0.08) TCGA-D9-A1JX-06 2 155566269 155566269 G A KCNJ3 Missense_Mutation p.R286Q 0.29 tolerated(0.39) benign(0.045) TCGA-D9-A1JX-06 2 160206325 160206325 G A BAZ2B Missense_Mutation p.P1586L 0.40 benign(0.082) TCGA-D9-A1JX-06 2 160879191 160879191 T C PLA2R1 Missense_Mutation p.T427A 0.47 tolerated(0.24) benign(0.013) TCGA-D9-A1JX-06 2 165952078 165952078 G A SCN3A Silent p.F1458F 0.29 TCGA-D9-A1JX-06 2 166900468 166900468 C T SCN1A Missense_Mutation p.G585E 0.41 tolerated(0.06) possibly_damaging(0.741) TCGA-D9-A1JX-06 2 179604720 179604720 G A TTN Missense_Mutation p.L4414F 0.33 TCGA-D9-A1JX-06 2 179616407 179616407 C T TTN Intron 0.32 TCGA-D9-A1JX-06 2 179659762 179659762 C G TTN Missense_Mutation p.G378R 0.38 TCGA-D9-A1JX-06 2 180014090 180014090 G A SESTD1 Missense_Mutation p.S172L 0.28 tolerated(0.14) possibly_damaging(0.543) TCGA-D9-A1JX-06 2 217234548 217234548 C T MARCH4 Missense_Mutation p.D146N 0.29 deleterious(0.01) probably_damaging(0.955) TCGA-D9-A1JX-06 2 228884669 228884669 G A SPHKAP Missense_Mutation p.P301S 0.38 tolerated(0.22) benign(0.009) TCGA-D9-A1JX-06 2 231102945 231102945 T A SP140 Missense_Mutation p.F85L 0.48 tolerated(0.18) possibly_damaging(0.559) TCGA-D9-A1JX-06 2 38178549 38178549 T C RMDN2 Missense_Mutation p.L64S 0.33 tolerated_low_confidence(0.24) possibly_damaging(0.856) TCGA-D9-A1JX-06 2 47382311 47382311 G A C2orf61 Missense_Mutation p.S27L 0.29 tolerated(0.08) benign(0.004) TCGA-D9-A1JX-06 2 677265 677265 G C TMEM18 Intron 0.28 TCGA-D9-A1JX-06 2 71896266 71896266 G A DYSF Nonsense_Mutation p.W1857* 0.33 TCGA-D9-A1JX-06 2 96687993 96687993 G A GPAT2 Missense_Mutation p.P768S 0.53 tolerated(0.09) possibly_damaging(0.803) TCGA-D9-A1JX-06 2 99156090 99156090 A T INPP4A Missense_Mutation p.H257L 0.29 deleterious(0.01) benign(0.224) TCGA-D9-A1JX-06 2 99156091 99156091 C T INPP4A Silent p.H257H 0.29 TCGA-D9-A1JX-06 3 10401650 10401650 C T ATP2B2 Missense_Mutation p.R606H 0.41 deleterious(0) probably_damaging(0.937) TCGA-D9-A1JX-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-D9-A1JX-06 3 119466103 119466103 G A MAATS1 Missense_Mutation p.E682K 0.40 deleterious(0) probably_damaging(0.956) TCGA-D9-A1JX-06 3 122003562 122003562 G A CASR Missense_Mutation p.E931K 0.44 deleterious_low_confidence(0.02) benign(0.385) TCGA-D9-A1JX-06 3 128848999 128848999 C T ISY1 Missense_Mutation p.M283I 0.36 tolerated(0.11) benign(0.373) TCGA-D9-A1JX-06 3 133099211 133099211 T C TMEM108 Missense_Mutation p.I219T 0.29 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D9-A1JX-06 3 139297737 139297737 C T NMNAT3 Nonsense_Mutation p.W53* 0.37 TCGA-D9-A1JX-06 3 164907017 164907017 C T SLITRK3 Silent p.L534L 0.34 TCGA-D9-A1JX-06 3 172224556 172224556 C T TNFSF10 Missense_Mutation p.R191Q 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A1JX-06 3 195453370 195453370 G A MUC20 Silent p.A632A 0.21 TCGA-D9-A1JX-06 3 25215977 25215977 C T AC133680.1 3'Flank 0.44 TCGA-D9-A1JX-06 3 3067886 3067886 C T CNTN4 Silent p.I529I 0.33 TCGA-D9-A1JX-06 3 423874 423874 C T CHL1 Missense_Mutation p.P630L 0.48 deleterious(0) possibly_damaging(0.844) TCGA-D9-A1JX-06 3 48474298 48474298 C A CCDC51 Silent p.A252A 0.39 TCGA-D9-A1JX-06 3 7188268 7188268 G A GRM7 Missense_Mutation p.G217S 0.38 deleterious(0.02) possibly_damaging(0.589) TCGA-D9-A1JX-06 3 9517225 9517225 C T SETD5 Missense_Mutation p.S1260F 0.45 deleterious(0) possibly_damaging(0.807) TCGA-D9-A1JX-06 3 96962974 96962974 C T EPHA6 Silent p.I483I 0.33 TCGA-D9-A1JX-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A1JX-06 4 111026722 111026722 A C ELOVL6 Missense_Mutation p.M51R 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A1JX-06 4 126337775 126337775 C T FAT4 Missense_Mutation p.S2339L 0.33 benign(0.008) TCGA-D9-A1JX-06 4 13339002 13339002 T A HSP90AB2P RNA 0.50 TCGA-D9-A1JX-06 4 147796026 147796026 C T TTC29 Missense_Mutation p.G214E 0.12 deleterious(0.04) probably_damaging(0.955) TCGA-D9-A1JX-06 4 149357927 149357927 G A NR3C2 Missense_Mutation p.S29F 0.31 tolerated_low_confidence(0.61) benign(0.354) TCGA-D9-A1JX-06 4 15018896 15018897 - T CPEB2 Frame_Shift_Ins p.K708* 0.22 TCGA-D9-A1JX-06 4 159780304 159780304 C T FNIP2 Missense_Mutation p.S318F 0.32 deleterious(0) possibly_damaging(0.789) TCGA-D9-A1JX-06 4 166935658 166935658 A G TLL1 Missense_Mutation p.T330A 0.31 tolerated(0.1) benign(0.073) TCGA-D9-A1JX-06 4 187549870 187549870 A T FAT1 Silent p.S1457S 0.51 TCGA-D9-A1JX-06 4 36152536 36152536 G A ARAP2 Silent p.F961F 0.06 TCGA-D9-A1JX-06 4 40440569 40440569 G A RBM47 Silent p.A114A 0.33 TCGA-D9-A1JX-06 4 79236830 79236830 G A FRAS1 Silent p.G587G 0.35 TCGA-D9-A1JX-06 4 80246960 80246960 C T NAA11 Silent p.E24E 0.30 TCGA-D9-A1JX-06 5 118970290 118970290 G A FAM170A Missense_Mutation p.E283K 0.77 tolerated(0.5) benign(0.009) TCGA-D9-A1JX-06 5 126791215 126791215 G A MEGF10 Missense_Mutation p.E1050K 0.69 deleterious(0) probably_damaging(0.989) TCGA-D9-A1JX-06 5 136324196 136324196 G A SPOCK1 Silent p.I281I 0.65 TCGA-D9-A1JX-06 5 137500715 137500715 G A BRD8 Silent p.L473L 0.59 TCGA-D9-A1JX-06 5 140720178 140720178 C T PCDHGA2 Missense_Mutation p.S547L 0.68 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D9-A1JX-06 5 149771544 149771544 C T TCOF1 Missense_Mutation p.P1108S 0.70 tolerated(0.1) benign(0.259) TCGA-D9-A1JX-06 5 1501585 1501585 A C LPCAT1 Missense_Mutation p.L90R 0.39 tolerated(0.61) possibly_damaging(0.643) TCGA-D9-A1JX-06 5 151784685 151784685 G A NMUR2 5'UTR 0.60 TCGA-D9-A1JX-06 5 168114078 168114078 C T SLIT3 Missense_Mutation p.D1074N 0.68 tolerated(0.72) benign(0.015) TCGA-D9-A1JX-06 5 176016346 176016346 C T CDHR2 Silent p.L1008L 0.74 TCGA-D9-A1JX-06 5 2749632 2749632 C T IRX2 Silent p.K173K 0.36 TCGA-D9-A1JX-06 5 35771819 35771819 G A SPEF2 Missense_Mutation p.E1304K 0.34 tolerated(0.36) probably_damaging(0.989) TCGA-D9-A1JX-06 5 41142989 41142989 C A C6 Nonsense_Mutation p.G915* 0.37 TCGA-D9-A1JX-06 6 112397659 112397659 G A TUBE1 Missense_Mutation p.P168S 0.59 deleterious(0.04) probably_damaging(0.913) TCGA-D9-A1JX-06 6 128643452 128643452 G A PTPRK Missense_Mutation p.S76F 0.65 deleterious(0) benign(0.228) TCGA-D9-A1JX-06 6 151936661 151936661 G A CCDC170 Silent p.E598E 0.66 TCGA-D9-A1JX-06 6 170855238 170855238 G A PSMB1 Missense_Mutation p.H86Y 0.75 tolerated(1) benign(0.272) TCGA-D9-A1JX-06 6 24467452 24467452 C T GPLD1 Missense_Mutation p.R199Q 0.35 tolerated(0.2) benign(0.076) TCGA-D9-A1JX-06 6 25605097 25605097 G A LRRC16A Missense_Mutation p.E1204K 0.20 deleterious_low_confidence(0.04) benign(0.125) TCGA-D9-A1JX-06 6 31133748 31133748 C T POU5F1 Missense_Mutation p.G161E 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A1JX-06 6 31525611 31525611 A G NFKBIL1 Missense_Mutation p.M181V 0.27 tolerated(0.4) benign(0) TCGA-D9-A1JX-06 6 34512119 34512119 G A SPDEF Silent p.L38L 0.46 TCGA-D9-A1JX-06 7 100184221 100184221 C T FBXO24 5'Flank 0.44 TCGA-D9-A1JX-06 7 134135573 134135573 C T AKR1B1 Missense_Mutation p.D106N 0.15 deleterious(0) possibly_damaging(0.73) TCGA-D9-A1JX-06 7 134135574 134135574 C A AKR1B1 Silent p.L105L 0.16 TCGA-D9-A1JX-06 7 139715526 139715526 C T TBXAS1 Silent p.F457F 0.47 TCGA-D9-A1JX-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-D9-A1JX-06 7 141765396 141765396 G A MGAM Intron 0.52 TCGA-D9-A1JX-06 7 143095971 143095971 T C EPHA1 Silent p.E353E 0.24 TCGA-D9-A1JX-06 7 143657151 143657151 C T OR2F1 Silent p.L30L 0.52 TCGA-D9-A1JX-06 7 20721151 20721151 C T ABCB5 Silent p.I577I 0.50 TCGA-D9-A1JX-06 7 21750226 21750226 A C DNAH11 Missense_Mutation p.N2254H 0.22 probably_damaging(0.919) TCGA-D9-A1JX-06 7 21778399 21778399 G A DNAH11 Missense_Mutation p.D2583N 0.65 probably_damaging(1) TCGA-D9-A1JX-06 7 2279128 2279128 G A FTSJ2 Missense_Mutation p.R75W 0.30 tolerated(0.09) probably_damaging(0.988) TCGA-D9-A1JX-06 7 34192721 34192721 G A BMPER Missense_Mutation p.G632S 0.57 deleterious(0.02) possibly_damaging(0.475) TCGA-D9-A1JX-06 7 4917310 4917310 G A RADIL Missense_Mutation p.S154F 0.27 deleterious(0.03) benign(0.19) TCGA-D9-A1JX-06 7 53103724 53103724 G A POM121L12 Missense_Mutation p.M120I 0.29 tolerated(0.06) benign(0.216) TCGA-D9-A1JX-06 7 72657649 72657649 C T GTF2IRD2P1 RNA 0.47 TCGA-D9-A1JX-06 7 82390045 82390045 C T PCLO Silent p.K5066K 0.24 TCGA-D9-A1JX-06 7 82595557 82595557 C T PCLO Missense_Mutation p.E1183K 0.56 unknown(0) TCGA-D9-A1JX-06 7 86522286 86522286 G A KIAA1324L Missense_Mutation p.A939V 0.29 deleterious(0.02) possibly_damaging(0.775) TCGA-D9-A1JX-06 7 94917897 94917897 C T PPP1R9A Missense_Mutation p.A1260V 0.34 deleterious(0.01) probably_damaging(0.92) TCGA-D9-A1JX-06 7 98530997 98530997 T G TRRAP Missense_Mutation p.V1329G 0.41 possibly_damaging(0.451) TCGA-D9-A1JX-06 8 106815059 106815059 G A ZFPM2 Missense_Mutation p.E917K 0.42 tolerated(0.33) probably_damaging(0.91) TCGA-D9-A1JX-06 8 11188894 11188894 C T SLC35G5 Silent p.P93P 0.31 TCGA-D9-A1JX-06 8 139715557 139715557 G A COL22A1 Missense_Mutation p.P851S 0.47 probably_damaging(0.993) TCGA-D9-A1JX-06 8 145059797 145059797 C T PARP10 Silent p.E152E 0.31 TCGA-D9-A1JX-06 8 145235343 145235343 C T MROH1 Missense_Mutation p.P160L 0.36 deleterious(0) probably_damaging(0.962) TCGA-D9-A1JX-06 8 76476240 76476240 C T HNF4G Missense_Mutation p.P416L 0.45 deleterious(0) possibly_damaging(0.852) TCGA-D9-A1JX-06 8 77767738 77767738 G A ZFHX4 Missense_Mutation p.D2861N 0.33 probably_damaging(0.944) TCGA-D9-A1JX-06 8 77767838 77767838 A T ZFHX4 Missense_Mutation p.D2894V 0.34 possibly_damaging(0.844) TCGA-D9-A1JX-06 8 97270633 97270633 G A MTERFD1 Nonsense_Mutation p.Q96* 0.28 TCGA-D9-A1JX-06 9 111617529 111617529 C G ACTL7B Missense_Mutation p.D228H 0.80 deleterious(0.01) possibly_damaging(0.739) TCGA-D9-A1JX-06 9 117554715 117554715 G T TNFSF15 Missense_Mutation p.D91E 0.86 tolerated(0.64) benign(0) TCGA-D9-A1JX-06 9 119188216 119188216 T C ASTN2 Missense_Mutation p.S1261G 0.81 tolerated(0.39) unknown(0) TCGA-D9-A1JX-06 9 119802190 119802190 G A ASTN2 Missense_Mutation p.S393F 0.79 deleterious(0) unknown(0) TCGA-D9-A1JX-06 9 121929550 121929550 G A BRINP1 Missense_Mutation p.R700W 0.74 deleterious(0) probably_damaging(0.973) TCGA-D9-A1JX-06 9 14846007 14846007 G A FREM1 Silent p.V448V 0.83 TCGA-D9-A1JX-06 9 32450168 32450168 C T ACO1 3'UTR 0.83 TCGA-D9-A1JX-06 9 33468039 33468039 G A NOL6 Silent p.D471D 0.75 TCGA-D9-A1JX-06 9 94493196 94493196 C T ROR2 Silent p.S393S 0.58 TCGA-D9-A1JX-06 X 1321287 1321287 G A CRLF2 Silent p.F156F 0.64 TCGA-D9-A1JX-06 X 30849651 30849651 G A TAB3 Nonsense_Mutation p.R678* 0.62 TCGA-D9-A1JX-06 X 65474959 65474959 T A HEPH Nonsense_Mutation p.Y936* 0.53 TCGA-D9-A1JX-06 X 75004593 75004593 G A MAGEE2 Silent p.F98F 0.62 TCGA-D9-A1X3-06 10 101716647 101716647 G A DNMBP Missense_Mutation p.P195L 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A1X3-06 10 93788712 93788712 A G BTAF1 3'UTR 0.47 TCGA-D9-A1X3-06 11 10791757 10791757 T G CTR9 Missense_Mutation p.Y704D 0.50 deleterious(0) probably_damaging(0.997) TCGA-D9-A1X3-06 11 113196260 113196260 G C TTC12 Missense_Mutation p.G113R 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A1X3-06 11 48145321 48145321 A G PTPRJ Missense_Mutation p.N258S 0.45 tolerated(0.18) benign(0.086) TCGA-D9-A1X3-06 11 48177618 48177618 G T PTPRJ Nonsense_Mutation p.E1129* 0.42 TCGA-D9-A1X3-06 11 49974394 49974394 C A OR4C13 Missense_Mutation p.S140R 0.39 tolerated_low_confidence(0.29) benign(0.008) TCGA-D9-A1X3-06 11 76834836 76834836 C T CAPN5 Nonsense_Mutation p.R615* 0.52 TCGA-D9-A1X3-06 11 86662335 86662335 C T FZD4 Missense_Mutation p.G488D 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A1X3-06 12 48723311 48723311 C A H1FNT Silent p.L79L 0.10 TCGA-D9-A1X3-06 12 72307690 72307690 C T TBC1D15 Missense_Mutation p.S479F 0.46 deleterious(0.04) possibly_damaging(0.649) TCGA-D9-A1X3-06 12 72307701 72307701 C T TBC1D15 Nonsense_Mutation p.Q483* 0.48 TCGA-D9-A1X3-06 12 7531757 7531757 G T CD163L1 Missense_Mutation p.Q730K 0.32 deleterious(0.01) probably_damaging(0.963) TCGA-D9-A1X3-06 14 100728792 100728792 A - YY1 Frame_Shift_Del p.E278Nfs*5 0.34 TCGA-D9-A1X3-06 14 38679353 38679353 G T SSTR1 Silent p.V253V 0.40 TCGA-D9-A1X3-06 14 61788891 61788891 C G PRKCH Silent p.P24P 0.27 TCGA-D9-A1X3-06 14 77950804 77950804 A C ISM2 Silent p.T163T 0.48 TCGA-D9-A1X3-06 16 11009480 11009480 C T CIITA Missense_Mutation p.T981M 0.37 tolerated(0.1) benign(0.011) TCGA-D9-A1X3-06 17 6683324 6683324 G A FBXO39 Nonsense_Mutation p.W46* 0.51 TCGA-D9-A1X3-06 18 48256228 48256228 C T MAPK4 3'UTR 0.39 TCGA-D9-A1X3-06 1 144859894 144859894 C T PDE4DIP Missense_Mutation p.G2064R 0.20 tolerated(0.12) possibly_damaging(0.522) TCGA-D9-A1X3-06 1 158606503 158606503 C T SPTA1 Silent p.Q1746Q 0.15 TCGA-D9-A1X3-06 1 176525708 176525708 G A PAPPA2 Missense_Mutation p.V84M 0.51 tolerated_low_confidence(0.3) benign(0.006) TCGA-D9-A1X3-06 1 201047108 201047108 G A CACNA1S Silent p.S506S 0.33 TCGA-D9-A1X3-06 1 34033216 34033216 G A CSMD2 Missense_Mutation p.S2763L 0.94 deleterious(0) benign(0.262) TCGA-D9-A1X3-06 1 35913788 35913788 C T KIAA0319L Silent p.P833P 0.20 TCGA-D9-A1X3-06 1 55505557 55505557 T C PCSK9 Missense_Mutation p.L16P 0.52 tolerated_low_confidence(0.17) benign(0) TCGA-D9-A1X3-06 20 32341106 32341106 C T ZNF341 Silent p.P206P 0.61 TCGA-D9-A1X3-06 20 47614759 47614759 G A ARFGEF2 Missense_Mutation p.G1084E 0.47 deleterious(0) probably_damaging(0.973) TCGA-D9-A1X3-06 21 39671704 39671704 G A KCNJ15 Missense_Mutation p.R174Q 0.94 deleterious(0) probably_damaging(0.998) TCGA-D9-A1X3-06 2 233925202 233925202 G T INPP5D Missense_Mutation p.W5L 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A1X3-06 2 71012684 71012684 G A FIGLA Nonsense_Mutation p.Q158* 0.29 TCGA-D9-A1X3-06 2 9621491 9621491 C A IAH1 Silent p.S120S 0.12 TCGA-D9-A1X3-06 3 105421139 105421139 C T CBLB Silent p.P586P 0.23 TCGA-D9-A1X3-06 3 134880946 134880946 G T EPHB1 Silent p.V503V 0.75 TCGA-D9-A1X3-06 3 48309500 48309500 A G ZNF589 Missense_Mutation p.I107V 0.30 tolerated(0.49) benign(0.141) TCGA-D9-A1X3-06 4 1803642 1803642 C T FGFR3 Missense_Mutation p.H274Y 0.45 tolerated(1) probably_damaging(0.953) TCGA-D9-A1X3-06 5 14602345 14602345 G A FAM105A Silent p.R134R 0.10 TCGA-D9-A1X3-06 5 191738 191738 G A LRRC14B Missense_Mutation p.V29M 0.12 tolerated(0.09) benign(0.333) TCGA-D9-A1X3-06 5 33658390 33658390 C G ADAMTS12 Silent p.L363L 0.26 TCGA-D9-A1X3-06 5 63803626 63803626 G A RGS7BP Missense_Mutation p.R85Q 0.40 deleterious(0.01) benign(0.417) TCGA-D9-A1X3-06 6 148865579 148865579 G A SASH1 Silent p.K991K 0.47 TCGA-D9-A1X3-06 6 31778779 31778779 C T HSPA1L Missense_Mutation p.R324Q 0.48 tolerated_low_confidence(0.07) benign(0.006) TCGA-D9-A1X3-06 7 148876793 148876793 C T ZNF398 Missense_Mutation p.P610L 0.23 tolerated_low_confidence(0.08) benign(0.022) TCGA-D9-A1X3-06 7 87370861 87370861 A C RUNDC3B Missense_Mutation p.I216L 0.49 tolerated(0.06) possibly_damaging(0.751) TCGA-D9-A1X3-06 8 48749816 48749816 G A PRKDC Missense_Mutation p.P2572L 0.55 benign(0.002) TCGA-D9-A1X3-06 9 21971110 21971110 T C CDKN2A Missense_Mutation p.H83R 0.92 deleterious(0) probably_damaging(0.996) TCGA-D9-A1X3-06 X 103044323 103044323 C T PLP1 Missense_Mutation p.S253F 0.94 deleterious(0.02) possibly_damaging(0.745) TCGA-D9-A1X3-06 X 139038753 139038753 C T CXorf66 Missense_Mutation p.A130T 0.48 tolerated(0.22) benign(0) TCGA-D9-A3Z1-06 10 100017756 100017756 C T LOXL4 Missense_Mutation p.G363R 0.16 deleterious(0.04) benign(0.261) TCGA-D9-A3Z1-06 10 103901748 103901748 C T PPRC1 Silent p.F1161F 0.20 TCGA-D9-A3Z1-06 10 116975511 116975511 G A ATRNL1 Missense_Mutation p.G469S 0.11 deleterious(0) possibly_damaging(0.874) TCGA-D9-A3Z1-06 10 116975512 116975512 G A ATRNL1 Missense_Mutation p.G469D 0.10 deleterious(0) probably_damaging(0.92) TCGA-D9-A3Z1-06 10 118202630 118202630 C T PNLIPRP3 Missense_Mutation p.R90C 0.19 deleterious(0.01) benign(0.099) TCGA-D9-A3Z1-06 10 118327281 118327281 G A PNLIP Missense_Mutation p.E457K 0.18 tolerated(0.11) benign(0.006) TCGA-D9-A3Z1-06 10 121551083 121551083 C T INPP5F Missense_Mutation p.P124S 0.07 tolerated(0.21) probably_damaging(0.989) TCGA-D9-A3Z1-06 10 121551084 121551084 C T INPP5F Missense_Mutation p.P124L 0.08 tolerated(0.17) probably_damaging(0.995) TCGA-D9-A3Z1-06 10 123844903 123844903 C T TACC2 Missense_Mutation p.P963L 0.17 benign(0.012) TCGA-D9-A3Z1-06 10 124090761 124090761 C T BTBD16 Silent p.N358N 0.11 TCGA-D9-A3Z1-06 10 124457674 124457674 G A C10orf120 Silent p.L195L 0.14 TCGA-D9-A3Z1-06 10 124596401 124596401 A G CUZD1 Missense_Mutation p.Y255H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A3Z1-06 10 127789729 127789729 C T ADAM12 Missense_Mutation p.D278N 0.13 tolerated(0.5) benign(0.319) TCGA-D9-A3Z1-06 10 17271961 17271961 G A VIM Silent p.E180E 0.29 TCGA-D9-A3Z1-06 10 24762363 24762363 C T KIAA1217 Silent p.I351I 0.18 TCGA-D9-A3Z1-06 10 24833041 24833041 G A KIAA1217 Silent p.L1614L 0.17 TCGA-D9-A3Z1-06 10 30316581 30316581 G A KIAA1462 Silent p.I832I 0.16 TCGA-D9-A3Z1-06 10 31810301 31810301 C T ZEB1 Missense_Mutation p.P681S 0.12 tolerated(0.11) benign(0.057) TCGA-D9-A3Z1-06 10 33094022 33094022 C T C10ORF68 Silent p.F302F 0.13 TCGA-D9-A3Z1-06 10 48389519 48389519 C T RBP3 Silent p.L453L 0.15 TCGA-D9-A3Z1-06 10 49654630 49654630 C T ARHGAP22 Missense_Mutation p.R650Q 0.14 tolerated(1) benign(0.002) TCGA-D9-A3Z1-06 10 50948764 50948764 C T OGDHL Missense_Mutation p.G711E 0.22 deleterious(0) probably_damaging(0.978) TCGA-D9-A3Z1-06 10 50958944 50958944 G A OGDHL Silent p.T279T 0.19 TCGA-D9-A3Z1-06 10 54530441 54530441 C T MBL2 Missense_Mutation p.G98E 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A3Z1-06 10 61832293 61832293 T C ANK3 Silent p.K2782K 0.16 TCGA-D9-A3Z1-06 10 72307196 72307196 C T PALD1 Silent p.Y752Y 0.23 TCGA-D9-A3Z1-06 10 72307197 72307197 C T PALD1 Missense_Mutation p.R753C 0.23 deleterious(0) possibly_damaging(0.828) TCGA-D9-A3Z1-06 10 72358718 72358718 C T PRF1 Silent p.E253E 0.13 TCGA-D9-A3Z1-06 10 75276590 75276590 G A USP54 Silent p.S1198S 0.11 TCGA-D9-A3Z1-06 10 84118606 84118606 G A NRG3 Missense_Mutation p.G312E 0.21 deleterious(0) possibly_damaging(0.866) TCGA-D9-A3Z1-06 10 88672037 88672037 C T BMPR1A Missense_Mutation p.R191C 0.11 tolerated(0.09) possibly_damaging(0.732) TCGA-D9-A3Z1-06 10 88768279 88768279 C T RP11-96C23.10 3'Flank 0.13 TCGA-D9-A3Z1-06 10 91099395 91099395 C T IFIT3 Missense_Mutation p.P328L 0.11 tolerated(0.65) benign(0.015) TCGA-D9-A3Z1-06 10 91465117 91465117 T G KIF20B Missense_Mutation p.I22M 0.12 tolerated(0.22) benign(0.312) TCGA-D9-A3Z1-06 10 95791108 95791108 T A PLCE1 Missense_Mutation p.L102H 0.23 tolerated_low_confidence(0.11) benign(0.002) TCGA-D9-A3Z1-06 10 96522539 96522539 G A CYP2C19 Missense_Mutation p.R26K 0.19 tolerated(1) benign(0.005) TCGA-D9-A3Z1-06 10 96829085 96829085 C T CYP2C8 Silent p.R25R 0.23 TCGA-D9-A3Z1-06 10 97779243 97779243 C T CC2D2B Intron 0.16 TCGA-D9-A3Z1-06 10 98082469 98082469 G A DNTT Missense_Mutation p.R245Q 0.13 deleterious(0.05) benign(0.037) TCGA-D9-A3Z1-06 11 100912815 100912815 C T PGR Missense_Mutation p.R836Q 0.17 deleterious(0.01) benign(0.105) TCGA-D9-A3Z1-06 11 101323690 101323690 C T TRPC6 Missense_Mutation p.R931K 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.9) TCGA-D9-A3Z1-06 11 102733708 102733708 G A MMP12 RNA 0.25 TCGA-D9-A3Z1-06 11 103814205 103814205 C T PDGFD Silent p.R249R 0.14 TCGA-D9-A3Z1-06 11 106810341 106810341 G A GUCY1A2 Nonsense_Mutation p.R351* 0.22 TCGA-D9-A3Z1-06 11 110450332 110450332 G A ARHGAP20 Missense_Mutation p.S1113F 0.14 tolerated_low_confidence(0.69) benign(0.013) TCGA-D9-A3Z1-06 11 111156782 111156782 G A C11orf53 3'UTR 0.14 TCGA-D9-A3Z1-06 11 113085146 113085146 G A NCAM1 Silent p.Q383Q 0.16 TCGA-D9-A3Z1-06 11 116707050 116707050 T C APOA1 Missense_Mutation p.Q93R 0.12 tolerated(0.1) benign(0.067) TCGA-D9-A3Z1-06 11 118133683 118133683 C T MPZL2 Nonsense_Mutation p.W63* 0.11 TCGA-D9-A3Z1-06 11 118344687 118344687 C T KMT2A Missense_Mutation p.S938L 0.19 benign(0.077) TCGA-D9-A3Z1-06 11 12380033 12380033 C T MICALCL 3'UTR 0.11 TCGA-D9-A3Z1-06 11 123886824 123886824 G A OR10G4 Silent p.P181P 0.19 TCGA-D9-A3Z1-06 11 124413391 124413391 G A OR8B12 Silent p.L54L 0.18 TCGA-D9-A3Z1-06 11 126073501 126073501 G A RPUSD4 Missense_Mutation p.R316C 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 11 129772231 129772231 C T PRDM10 Missense_Mutation p.E1154K 0.23 deleterious_low_confidence(0) benign(0.228) TCGA-D9-A3Z1-06 11 1628944 1628944 G A KRTAP5-3 Silent p.S224S 0.12 TCGA-D9-A3Z1-06 11 1628945 1628945 G A KRTAP5-3 Missense_Mutation p.S224F 0.12 deleterious(0.04) unknown(0) TCGA-D9-A3Z1-06 11 16863164 16863164 C T PLEKHA7 Missense_Mutation p.E268K 0.14 tolerated(0.36) benign(0.088) TCGA-D9-A3Z1-06 11 17428260 17428260 C T ABCC8 Missense_Mutation p.V1080I 0.11 tolerated(0.57) benign(0.002) TCGA-D9-A3Z1-06 11 20658822 20658822 C T SLC6A5 Silent p.F614F 0.14 TCGA-D9-A3Z1-06 11 404551 404551 G A PKP3 Silent p.E792E 0.14 TCGA-D9-A3Z1-06 11 46564805 46564805 G A AMBRA1 Silent p.I254I 0.13 TCGA-D9-A3Z1-06 11 46799755 46799755 G A CKAP5 Silent p.I894I 0.16 TCGA-D9-A3Z1-06 11 46812068 46812068 C T CKAP5 Silent p.K572K 0.19 TCGA-D9-A3Z1-06 11 46911850 46911850 G A LRP4 Silent p.H631H 0.19 TCGA-D9-A3Z1-06 11 4928871 4928871 G A OR51A7 Missense_Mutation p.G91E 0.14 tolerated(1) benign(0.007) TCGA-D9-A3Z1-06 11 4976383 4976383 C T OR51A2 Missense_Mutation p.M187I 0.27 tolerated(0.09) possibly_damaging(0.694) TCGA-D9-A3Z1-06 11 55652968 55652968 T C TRIM51 Missense_Mutation p.F22L 0.15 tolerated(0.66) possibly_damaging(0.533) TCGA-D9-A3Z1-06 11 55944143 55944143 T C OR5J2 Missense_Mutation p.L17S 0.17 deleterious(0) probably_damaging(0.987) TCGA-D9-A3Z1-06 11 6129417 6129417 C T OR56B4 Nonsense_Mutation p.Q137* 0.10 TCGA-D9-A3Z1-06 11 6238657 6238657 G A FAM160A2 Missense_Mutation p.P734L 0.14 tolerated(0.09) benign(0.01) TCGA-D9-A3Z1-06 11 63764668 63764668 C T OTUB1 Silent p.F190F 0.18 TCGA-D9-A3Z1-06 11 66359606 66359606 G A CCDC87 Missense_Mutation p.T294I 0.13 tolerated(0.13) benign(0.202) TCGA-D9-A3Z1-06 11 6651132 6651132 G A DCHS1 Silent p.S1602S 0.20 TCGA-D9-A3Z1-06 11 68029170 68029170 C T C11orf24 Silent p.K431K 0.21 TCGA-D9-A3Z1-06 11 68673685 68673685 C T IGHMBP2 Missense_Mutation p.P79S 0.20 deleterious(0.02) possibly_damaging(0.795) TCGA-D9-A3Z1-06 11 71849902 71849902 C T FOLR3 Silent p.S64S 0.21 TCGA-D9-A3Z1-06 11 82560193 82560193 T C PRCP Silent p.Q294Q 0.18 TCGA-D9-A3Z1-06 11 82879512 82879512 C T PCF11 Missense_Mutation p.P712L 0.20 tolerated(0.09) benign(0.024) TCGA-D9-A3Z1-06 11 83170763 83170763 T A DLG2 3'UTR 0.17 TCGA-D9-A3Z1-06 11 92526108 92526108 G A FAT3 Missense_Mutation p.G1596E 0.12 probably_damaging(1) TCGA-D9-A3Z1-06 11 93806295 93806295 G A HEPHL1 Missense_Mutation p.R446K 0.12 tolerated(0.86) benign(0.002) TCGA-D9-A3Z1-06 12 100550368 100550368 C T AC010203.1 3'Flank 0.26 TCGA-D9-A3Z1-06 12 104084292 104084292 C T STAB2 Silent p.F1091F 0.11 TCGA-D9-A3Z1-06 12 107245347 107245347 C T RIC8B Silent p.F427F 0.15 TCGA-D9-A3Z1-06 12 108985573 108985573 C T TMEM119 Missense_Mutation p.G196E 0.23 deleterious(0) probably_damaging(0.949) TCGA-D9-A3Z1-06 12 109959293 109959293 C T UBE3B Silent p.I767I 0.16 TCGA-D9-A3Z1-06 12 109994803 109994803 G A MMAB 3'UTR 0.16 TCGA-D9-A3Z1-06 12 110812092 110812092 C T ANAPC7 Missense_Mutation p.E553K 0.14 deleterious(0.01) benign(0.028) TCGA-D9-A3Z1-06 12 110989647 110989647 C A PPTC7 Missense_Mutation p.G117V 0.19 tolerated(0.32) benign(0.065) TCGA-D9-A3Z1-06 12 111085661 111085661 C T TCTN1 Silent p.A581A 0.19 TCGA-D9-A3Z1-06 12 113306152 113306152 G A RPH3A Intron 0.16 TCGA-D9-A3Z1-06 12 11546473 11546473 G A PRB2 Missense_Mutation p.P180L 0.12 deleterious(0.05) unknown(0) TCGA-D9-A3Z1-06 12 11546731 11546731 G A PRB2 Missense_Mutation p.P94L 0.13 deleterious(0.01) unknown(0) TCGA-D9-A3Z1-06 12 117664496 117664496 G A NOS1 Silent p.F1266F 0.15 TCGA-D9-A3Z1-06 12 12339964 12339964 G A LRP6 Missense_Mutation p.S246F 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-D9-A3Z1-06 12 124332563 124332563 C T DNAH10 Missense_Mutation p.T1839I 0.20 probably_damaging(1) TCGA-D9-A3Z1-06 12 124421867 124421867 G A CCDC92 Missense_Mutation p.P245L 0.21 tolerated(0.96) probably_damaging(0.999) TCGA-D9-A3Z1-06 12 21721855 21721855 G A GYS2 Missense_Mutation p.T256I 0.14 deleterious(0.03) possibly_damaging(0.481) TCGA-D9-A3Z1-06 12 2716177 2716177 G A CACNA1C Silent p.G1099G 0.13 TCGA-D9-A3Z1-06 12 29640714 29640714 G A OVCH1 Silent p.P268P 0.17 TCGA-D9-A3Z1-06 12 306646 306646 G A SLC6A12 Silent p.F324F 0.16 TCGA-D9-A3Z1-06 12 41323714 41323714 G A CNTN1 Missense_Mutation p.D205N 0.14 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 12 45169849 45169849 C T NELL2 Missense_Mutation p.E333K 0.09 deleterious(0) benign(0.328) TCGA-D9-A3Z1-06 12 48919445 48919445 G A OR8S1 Missense_Mutation p.E11K 0.15 deleterious(0.04) benign(0.035) TCGA-D9-A3Z1-06 12 49374390 49374390 G C WNT1 Missense_Mutation p.G181A 0.21 tolerated(0.17) benign(0.052) TCGA-D9-A3Z1-06 12 52942551 52942551 C T KRT71 Silent p.V249V 0.15 TCGA-D9-A3Z1-06 12 53588086 53588086 G A ITGB7 Missense_Mutation p.P402S 0.20 tolerated(0.17) benign(0.055) TCGA-D9-A3Z1-06 12 55863430 55863430 C T OR6C70 Missense_Mutation p.D165N 0.11 deleterious_low_confidence(0.03) benign(0.168) TCGA-D9-A3Z1-06 12 6972535 6972535 C T USP5 Missense_Mutation p.P650S 0.10 tolerated(0.12) benign(0.131) TCGA-D9-A3Z1-06 12 6972536 6972536 C T USP5 Missense_Mutation p.P650L 0.10 tolerated(0.13) benign(0.002) TCGA-D9-A3Z1-06 12 70048709 70048709 T A BEST3 Missense_Mutation p.E662V 0.09 deleterious_low_confidence(0) benign(0.021) TCGA-D9-A3Z1-06 12 72070869 72070869 C A THAP2 Missense_Mutation p.T223N 0.16 deleterious_low_confidence(0) benign(0.006) TCGA-D9-A3Z1-06 12 72070870 72070870 C T THAP2 Silent p.T223T 0.16 TCGA-D9-A3Z1-06 12 94634421 94634421 C T PLXNC1 Missense_Mutation p.P761S 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 12 96397680 96397680 G T LTA4H Missense_Mutation p.H517N 0.10 tolerated(0.36) benign(0.109) TCGA-D9-A3Z1-06 12 97328853 97328853 C T NEDD1 Missense_Mutation p.P204S 0.16 tolerated(0.29) benign(0.015) TCGA-D9-A3Z1-06 13 103718630 103718630 C T SLC10A2 5'UTR 0.24 TCGA-D9-A3Z1-06 13 21357756 21357756 C T XPO4 3'UTR 0.14 TCGA-D9-A3Z1-06 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.09 tolerated(0.11) benign(0.007) TCGA-D9-A3Z1-06 13 25266999 25266999 T C ATP12A Missense_Mutation p.F454L 0.14 deleterious(0) probably_damaging(0.931) TCGA-D9-A3Z1-06 13 31903733 31903733 C T B3GALTL Silent p.F475F 0.11 TCGA-D9-A3Z1-06 13 38211066 38211066 C T TRPC4 Missense_Mutation p.E975K 0.21 tolerated_low_confidence(0.2) benign(0.165) TCGA-D9-A3Z1-06 13 39544347 39544347 C T STOML3 Missense_Mutation p.R164Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 13 45589219 45589219 G C GPALPP1 Splice_Site p.X180_splice 0.12 TCGA-D9-A3Z1-06 13 72255943 72255943 C T DACH1 Silent p.G318G 0.14 TCGA-D9-A3Z1-06 13 86369151 86369151 G A SLITRK6 Missense_Mutation p.P498L 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 13 98660391 98660391 C T IPO5 Missense_Mutation p.P617S 0.14 deleterious(0) benign(0.212) TCGA-D9-A3Z1-06 14 106471457 106471457 G A IGHV1-3 Missense_Mutation p.T47I 0.09 deleterious(0.01) benign(0.097) TCGA-D9-A3Z1-06 14 19378093 19378093 G A OR11H12 Missense_Mutation p.G167E 0.05 deleterious(0) probably_damaging(0.989) TCGA-D9-A3Z1-06 14 22592169 22592169 G A TRAV26-1 Missense_Mutation p.R85K 0.17 tolerated(0.07) possibly_damaging(0.623) TCGA-D9-A3Z1-06 14 23894592 23894592 C T MYH7 Silent p.E774E 0.11 TCGA-D9-A3Z1-06 14 26917366 26917366 C T NOVA1 Silent p.G441G 0.13 TCGA-D9-A3Z1-06 14 33046326 33046326 G A AKAP6 Missense_Mutation p.G783R 0.18 deleterious(0.04) probably_damaging(0.954) TCGA-D9-A3Z1-06 14 33292889 33292889 T C AKAP6 Missense_Mutation p.V1957A 0.19 tolerated_low_confidence(0.7) benign(0.002) TCGA-D9-A3Z1-06 14 70527622 70527622 C T SLC8A3 Missense_Mutation p.E607K 0.19 deleterious(0.03) benign(0.237) TCGA-D9-A3Z1-06 14 73731413 73731413 C T PAPLN Missense_Mutation p.S1008L 0.22 tolerated(0.35) benign(0.017) TCGA-D9-A3Z1-06 14 73964968 73964968 C G HEATR4 Missense_Mutation p.V813L 0.26 deleterious(0.01) possibly_damaging(0.54) TCGA-D9-A3Z1-06 14 75301974 75301974 T C YLPM1 Missense_Mutation p.W2101R 0.17 probably_damaging(0.999) TCGA-D9-A3Z1-06 14 89068310 89068310 C T ZC3H14 Missense_Mutation p.S466L 0.21 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z1-06 14 92102787 92102787 C T CATSPERB Missense_Mutation p.G575E 0.09 deleterious(0.02) possibly_damaging(0.653) TCGA-D9-A3Z1-06 14 92102788 92102788 C T CATSPERB Missense_Mutation p.G575R 0.09 deleterious(0) probably_damaging(0.988) TCGA-D9-A3Z1-06 15 23316062 23316062 G A HERC2P2 RNA 0.12 TCGA-D9-A3Z1-06 15 23316063 23316063 G A HERC2P2 RNA 0.12 TCGA-D9-A3Z1-06 15 25420014 25420014 C T SNORD115-3 5'Flank 0.19 TCGA-D9-A3Z1-06 15 35149097 35149097 G A AQR Missense_Mutation p.P1452S 0.16 tolerated_low_confidence(0.32) benign(0) TCGA-D9-A3Z1-06 15 39880254 39880254 G A THBS1 Missense_Mutation p.G436S 0.14 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 15 41319823 41319823 G A INO80 Missense_Mutation p.P1007S 0.16 deleterious(0) probably_damaging(0.996) TCGA-D9-A3Z1-06 15 43525827 43525827 G A TGM5 Missense_Mutation p.P645L 0.14 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 15 54847647 54847647 G A UNC13C Silent p.E1965E 0.13 TCGA-D9-A3Z1-06 15 59179248 59179248 G A SLTM Missense_Mutation p.R921C 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A3Z1-06 15 69113056 69113056 C T ANP32A Missense_Mutation p.R12Q 0.17 deleterious(0.04) benign(0.005) TCGA-D9-A3Z1-06 15 74239560 74239560 C T LOXL1 Missense_Mutation p.T501I 0.11 deleterious(0) probably_damaging(0.996) TCGA-D9-A3Z1-06 15 79231507 79231507 A G CTSH Missense_Mutation p.F33S 0.13 tolerated(0.1) benign(0.044) TCGA-D9-A3Z1-06 15 81625493 81625493 C T TMC3 Missense_Mutation p.R857Q 0.13 deleterious_low_confidence(0.05) benign(0.087) TCGA-D9-A3Z1-06 15 83455798 83455798 C T FSD2 Silent p.R115R 0.14 TCGA-D9-A3Z1-06 15 83455947 83455947 C T FSD2 Missense_Mutation p.D66N 0.16 tolerated_low_confidence(0.06) benign(0.002) TCGA-D9-A3Z1-06 15 85448774 85448774 C T SLC28A1 Missense_Mutation p.S203F 0.22 tolerated(0.18) probably_damaging(0.997) TCGA-D9-A3Z1-06 15 86228062 86228062 C T AKAP13 Silent p.F1753F 0.16 TCGA-D9-A3Z1-06 15 90984815 90984815 C T IQGAP1 Missense_Mutation p.P243S 0.11 deleterious(0.03) benign(0.03) TCGA-D9-A3Z1-06 16 10775926 10775926 C T TEKT5 Missense_Mutation p.D263N 0.13 deleterious(0) probably_damaging(0.997) TCGA-D9-A3Z1-06 16 1717360 1717360 C T CRAMP1L Missense_Mutation p.P1021S 0.08 tolerated(0.18) benign(0.006) TCGA-D9-A3Z1-06 16 1816234 1816234 C T MAPK8IP3 Silent p.T880T 0.15 TCGA-D9-A3Z1-06 16 19451521 19451521 C T TMC5 Missense_Mutation p.P54L 0.15 deleterious_low_confidence(0.01) benign(0.197) TCGA-D9-A3Z1-06 16 20043436 20043436 G A GPR139 Missense_Mutation p.A228V 0.08 tolerated(0.11) probably_damaging(0.996) TCGA-D9-A3Z1-06 16 20673127 20673127 C T ACSM1 Silent p.Q327Q 0.19 TCGA-D9-A3Z1-06 16 20702545 20702545 C T ACSM1 5'UTR 0.19 TCGA-D9-A3Z1-06 16 21078644 21078644 G A DNAH3 Silent p.L1160L 0.12 TCGA-D9-A3Z1-06 16 22926815 22926815 C T HS3ST2 Nonsense_Mutation p.R346* 0.17 TCGA-D9-A3Z1-06 16 28935868 28935868 G A RABEP2 Missense_Mutation p.R44W 0.10 deleterious(0) possibly_damaging(0.689) TCGA-D9-A3Z1-06 16 31419781 31419781 G A ITGAD Missense_Mutation p.E349K 0.13 deleterious(0) probably_damaging(0.982) TCGA-D9-A3Z1-06 16 49670958 49670958 G A ZNF423 Missense_Mutation p.S702F 0.14 deleterious(0) probably_damaging(0.961) TCGA-D9-A3Z1-06 16 553031 553031 C T RAB11FIP3 Silent p.T443T 0.13 TCGA-D9-A3Z1-06 16 57921906 57921906 G A CNGB1 Silent p.T1105T 0.11 TCGA-D9-A3Z1-06 16 66944275 66944275 G A CDH16 Silent p.I685I 0.12 TCGA-D9-A3Z1-06 16 66946334 66946334 C T CDH16 Splice_Site p.X454_splice 0.21 TCGA-D9-A3Z1-06 16 703431 703431 T C WDR90 Missense_Mutation p.F405L 0.19 tolerated(0.1) benign(0.091) TCGA-D9-A3Z1-06 16 72170667 72170667 C A PMFBP1 Nonsense_Mutation p.E324* 0.11 TCGA-D9-A3Z1-06 16 72184698 72184698 G A PMFBP1 Missense_Mutation p.H149Y 0.13 deleterious(0.04) possibly_damaging(0.736) TCGA-D9-A3Z1-06 16 77331198 77331198 G A ADAMTS18 Missense_Mutation p.S930F 0.12 deleterious(0) benign(0.396) TCGA-D9-A3Z1-06 16 77359804 77359804 C T ADAMTS18 Missense_Mutation p.R664H 0.18 deleterious(0) probably_damaging(0.994) TCGA-D9-A3Z1-06 16 81991558 81991558 C T PLCG2 Intron 0.10 TCGA-D9-A3Z1-06 16 84129265 84129265 G A MBTPS1 Silent p.I189I 0.11 TCGA-D9-A3Z1-06 16 90133292 90133292 C T PRDM7 Missense_Mutation p.G110R 0.15 tolerated(0.35) benign(0.011) TCGA-D9-A3Z1-06 16 90162180 90162180 C T TUBB8P7 RNA 0.12 TCGA-D9-A3Z1-06 17 10296178 10296178 C T MYH8 Silent p.G1811G 0.13 TCGA-D9-A3Z1-06 17 10366918 10366918 C T MYH4 Missense_Mutation p.E231K 0.09 deleterious(0.01) probably_damaging(1) TCGA-D9-A3Z1-06 17 25915531 25915531 G A KSR1 Missense_Mutation p.R202Q 0.27 deleterious(0.02) possibly_damaging(0.83) TCGA-D9-A3Z1-06 17 26711525 26711525 G A SARM1 Silent p.K379K 0.16 TCGA-D9-A3Z1-06 17 27017171 27017171 G A SUPT6H Silent p.R1138R 0.21 TCGA-D9-A3Z1-06 17 2888335 2888335 G A RAP1GAP2 Missense_Mutation p.G263E 0.10 deleterious(0) probably_damaging(0.987) TCGA-D9-A3Z1-06 17 34951505 34951505 C T DHRS11 Silent p.I84I 0.23 TCGA-D9-A3Z1-06 17 36485665 36485665 C T GPR179 Missense_Mutation p.E1263K 0.30 tolerated(0.22) benign(0.011) TCGA-D9-A3Z1-06 17 3806589 3806589 G A P2RX1 Silent p.L218L 0.19 TCGA-D9-A3Z1-06 17 39768609 39768609 C T KRT16 Missense_Mutation p.G111E 0.12 deleterious(0.02) unknown(0) TCGA-D9-A3Z1-06 17 40095264 40095264 A G TTC25 RNA 0.26 TCGA-D9-A3Z1-06 17 41168114 41168114 C A VAT1 Missense_Mutation p.K382N 0.21 deleterious(0) probably_damaging(0.992) TCGA-D9-A3Z1-06 17 45913839 45913839 G A LRRC46 Missense_Mutation p.R198Q 0.14 tolerated(0.17) benign(0.037) TCGA-D9-A3Z1-06 17 46110610 46110610 G A COPZ2 Silent p.F107F 0.12 TCGA-D9-A3Z1-06 17 47123298 47123298 G A IGF2BP1 Missense_Mutation p.G481D 0.34 deleterious(0.01) benign(0.333) TCGA-D9-A3Z1-06 17 48628143 48628143 C T SPATA20 Silent p.Y416Y 0.16 TCGA-D9-A3Z1-06 17 4889566 4889566 G A CAMTA2 Silent p.S7S 0.19 TCGA-D9-A3Z1-06 17 50149724 50149724 C T CA10 Missense_Mutation p.G31S 0.20 tolerated(0.3) benign(0.001) TCGA-D9-A3Z1-06 17 5087375 5087375 G A ZNF594 Silent p.L59L 0.10 TCGA-D9-A3Z1-06 17 51900853 51900853 C T KIF2B Silent p.I153I 0.20 TCGA-D9-A3Z1-06 17 5463182 5463182 G A NLRP1 Silent p.F278F 0.12 TCGA-D9-A3Z1-06 17 56676729 56676729 G A TEX14 Silent p.S665S 0.14 TCGA-D9-A3Z1-06 17 6589427 6589447 ATTTTGGGGTGTGAACCCCAA - SLC13A5 3'UTR 0.19 TCGA-D9-A3Z1-06 17 66920910 66920910 A C ABCA8 Missense_Mutation p.D458E 0.14 tolerated(0.14) benign(0.013) TCGA-D9-A3Z1-06 17 67188746 67188746 G A ABCA10 Missense_Mutation p.S610F 0.08 deleterious(0) probably_damaging(0.969) TCGA-D9-A3Z1-06 17 67215859 67215859 A C ABCA10 Missense_Mutation p.N119K 0.22 tolerated(0.08) benign(0.275) TCGA-D9-A3Z1-06 17 72699182 72699182 C T CD300LF Silent p.L146L 0.24 TCGA-D9-A3Z1-06 17 72736954 72736954 C T RAB37 Silent p.I52I 0.19 TCGA-D9-A3Z1-06 17 72769804 72769804 G A NAT9 Missense_Mutation p.S34L 0.25 deleterious(0) probably_damaging(0.987) TCGA-D9-A3Z1-06 17 73274394 73274394 G A SLC25A19 Missense_Mutation p.A161V 0.14 deleterious(0) possibly_damaging(0.728) TCGA-D9-A3Z1-06 17 73808245 73808245 C T UNK Missense_Mutation p.R123C 0.14 deleterious(0) probably_damaging(0.997) TCGA-D9-A3Z1-06 17 74005475 74005475 C G EVPL Missense_Mutation p.D1271H 0.09 deleterious(0.01) probably_damaging(1) TCGA-D9-A3Z1-06 17 77708877 77708877 G A ENPP7 Silent p.G145G 0.16 TCGA-D9-A3Z1-06 17 78319950 78319950 C T RNF213 Silent p.I2605I 0.10 TCGA-D9-A3Z1-06 17 8700744 8700744 A C MFSD6L Missense_Mutation p.S565R 0.13 deleterious(0) probably_damaging(0.996) TCGA-D9-A3Z1-06 17 8739874 8739874 A G PIK3R6 Missense_Mutation p.Y151H 0.13 deleterious(0.02) probably_damaging(0.917) TCGA-D9-A3Z1-06 18 13056097 13056097 C T CEP192 Silent p.L1170L 0.29 TCGA-D9-A3Z1-06 18 28993268 28993268 G A DSG4 Missense_Mutation p.D964N 0.18 tolerated(0.29) possibly_damaging(0.839) TCGA-D9-A3Z1-06 18 34424175 34424175 C T KIAA1328 Missense_Mutation p.S81F 0.29 tolerated(0.99) benign(0.002) TCGA-D9-A3Z1-06 18 40853702 40853702 G A SYT4 Missense_Mutation p.T231I 0.13 deleterious(0.01) benign(0.024) TCGA-D9-A3Z1-06 18 47788571 47788571 C T CCDC11 Missense_Mutation p.G30S 0.12 tolerated(0.69) benign(0.004) TCGA-D9-A3Z1-06 18 56587201 56587201 C G ZNF532 Missense_Mutation p.S561W 0.17 deleterious(0.02) possibly_damaging(0.686) TCGA-D9-A3Z1-06 18 61585198 61585198 G A SERPINB10 Splice_Site p.X79_splice 0.16 TCGA-D9-A3Z1-06 18 77211094 77211094 C T NFATC1 Missense_Mutation p.S564F 0.18 deleterious(0) probably_damaging(0.994) TCGA-D9-A3Z1-06 19 10335081 10335081 G A S1PR2 Silent p.I167I 0.20 TCGA-D9-A3Z1-06 19 10449604 10449604 G A ICAM3 Missense_Mutation p.L33F 0.21 tolerated(0.15) benign(0.016) TCGA-D9-A3Z1-06 19 11325238 11325238 G A DOCK6 Silent p.I1398I 0.30 TCGA-D9-A3Z1-06 19 15281227 15281227 G A NOTCH3 Missense_Mutation p.P1677S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A3Z1-06 19 16528446 16528446 G A EPS15L1 Silent p.D370D 0.15 TCGA-D9-A3Z1-06 19 16860439 16860439 A C NWD1 Missense_Mutation p.D329A 0.14 tolerated(0.05) benign(0.097) TCGA-D9-A3Z1-06 19 17425186 17425186 C T DDA1 Missense_Mutation p.P42S 0.11 deleterious(0.03) probably_damaging(1) TCGA-D9-A3Z1-06 19 19135467 19135467 G A SUGP2 Missense_Mutation p.P564S 0.13 tolerated(0.08) benign(0.097) TCGA-D9-A3Z1-06 19 20229662 20229662 C T ZNF90 Silent p.V433V 0.17 TCGA-D9-A3Z1-06 19 22379527 22379527 C T ZNF676 5'UTR 0.14 TCGA-D9-A3Z1-06 19 23937644 23937644 C T ZNF681 Silent p.R69R 0.13 TCGA-D9-A3Z1-06 19 34302347 34302347 C T KCTD15 Missense_Mutation p.P195S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A3Z1-06 19 38951118 38951118 C T RYR1 Missense_Mutation p.L822F 0.14 probably_damaging(0.917) TCGA-D9-A3Z1-06 19 40363286 40363286 G A FCGBP Silent p.T4928T 0.14 TCGA-D9-A3Z1-06 19 40398385 40398385 G A FCGBP Silent p.F2194F 0.26 TCGA-D9-A3Z1-06 19 41092699 41092699 C T SHKBP1 Silent p.I395I 0.16 TCGA-D9-A3Z1-06 19 42260805 42260805 C T CEACAM6 Missense_Mutation p.T121I 0.16 deleterious(0.05) possibly_damaging(0.867) TCGA-D9-A3Z1-06 19 42819408 42819408 G A TMEM145 Missense_Mutation p.G192R 0.16 deleterious(0.03) benign(0.086) TCGA-D9-A3Z1-06 19 43258631 43258631 C T PSG8 Nonsense_Mutation p.W366* 0.13 TCGA-D9-A3Z1-06 19 43757713 43757713 C T PSG9 3'UTR 0.11 TCGA-D9-A3Z1-06 19 438991 438991 G A SHC2 Silent p.V193V 0.33 TCGA-D9-A3Z1-06 19 45284596 45284596 C T CBLC Silent p.F211F 0.11 TCGA-D9-A3Z1-06 19 4852125 4852125 G A PLIN3 Silent p.S179S 0.14 TCGA-D9-A3Z1-06 19 48537553 48537553 C T CABP5 Missense_Mutation p.G139R 0.16 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 19 49131968 49131968 G A SPHK2 Silent p.L301L 0.07 TCGA-D9-A3Z1-06 19 49131969 49131969 C A SPHK2 Missense_Mutation p.L302I 0.07 tolerated(0.14) benign(0.17) TCGA-D9-A3Z1-06 19 49224197 49224197 G A RASIP1 Missense_Mutation p.S917L 0.24 tolerated(0.18) benign(0.021) TCGA-D9-A3Z1-06 19 49377075 49377075 T C PPP1R15A Silent p.D195D 0.09 TCGA-D9-A3Z1-06 19 49925742 49925742 C T PTH2 Missense_Mutation p.V96M 0.14 deleterious_low_confidence(0.01) benign(0.084) TCGA-D9-A3Z1-06 19 50173529 50173529 C T BCL2L12 Silent p.F246F 0.21 TCGA-D9-A3Z1-06 19 50824031 50824031 G A KCNC3 Silent p.P663P 0.15 TCGA-D9-A3Z1-06 19 5111818 5111818 C T KDM4B Intron 0.10 TCGA-D9-A3Z1-06 19 51499382 51499382 G A KLK8 Missense_Mutation p.P284L 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 19 52249636 52249636 G A FPR1 Silent p.I204I 0.23 TCGA-D9-A3Z1-06 19 52394203 52394203 G A ZNF649 Missense_Mutation p.H396Y 0.21 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 19 53007995 53007995 G A ZNF578 Missense_Mutation p.E51K 0.14 deleterious(0.01) benign(0.306) TCGA-D9-A3Z1-06 19 54677874 54677874 G A MBOAT7 Missense_Mutation p.S428F 0.12 deleterious(0) probably_damaging(0.99) TCGA-D9-A3Z1-06 19 54802730 54802730 G A LILRA3 Silent p.A237A 0.15 TCGA-D9-A3Z1-06 19 55106567 55106567 G A LILRA1 Missense_Mutation p.A121T 0.10 tolerated(0.35) benign(0.05) TCGA-D9-A3Z1-06 19 55143135 55143135 C T LILRB1 Silent p.I85I 0.17 TCGA-D9-A3Z1-06 19 55439129 55439129 G A NLRP7 Missense_Mutation p.S942F 0.11 deleterious(0) probably_damaging(0.96) TCGA-D9-A3Z1-06 19 56329469 56329469 C T NLRP11 Silent p.Q24Q 0.12 TCGA-D9-A3Z1-06 19 57328094 57328094 G A PEG3 Silent p.F572F 0.14 TCGA-D9-A3Z1-06 19 57665779 57665779 T C DUXA 3'UTR 0.12 TCGA-D9-A3Z1-06 19 58601492 58601492 G A ZSCAN18 Missense_Mutation p.S104F 0.12 tolerated(0.47) probably_damaging(0.919) TCGA-D9-A3Z1-06 19 58639442 58639442 G A ZNF329 Missense_Mutation p.H477Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 19 58862778 58862778 C T A1BG Missense_Mutation p.V297I 0.10 tolerated(0.21) benign(0.304) TCGA-D9-A3Z1-06 19 621259 621259 G A POLRMT Silent p.F813F 0.16 TCGA-D9-A3Z1-06 19 7569240 7569240 G A C19orf45 Missense_Mutation p.G242E 0.13 deleterious(0.03) possibly_damaging(0.53) TCGA-D9-A3Z1-06 19 7810809 7810809 G A CD209 Missense_Mutation p.P115S 0.14 tolerated_low_confidence(0.32) possibly_damaging(0.672) TCGA-D9-A3Z1-06 19 8587370 8587370 G A MYO1F Silent p.P1037P 0.14 TCGA-D9-A3Z1-06 19 8587371 8587371 G A MYO1F Missense_Mutation p.P1037L 0.14 deleterious(0.03) benign(0.206) TCGA-D9-A3Z1-06 19 9033650 9033650 G A MUC16 Missense_Mutation p.S12096F 0.10 possibly_damaging(0.879) TCGA-D9-A3Z1-06 19 9058027 9058027 G A MUC16 Missense_Mutation p.H9807Y 0.18 unknown(0) TCGA-D9-A3Z1-06 1 109893608 109893608 G A SORT1 Missense_Mutation p.S242F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 1 110050303 110050303 C T AMIGO1 Missense_Mutation p.G411E 0.17 tolerated(1) benign(0.001) TCGA-D9-A3Z1-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.24 tolerated(0.06) benign(0.006) TCGA-D9-A3Z1-06 1 117568357 117568357 C T CD101 Silent p.Y885Y 0.15 TCGA-D9-A3Z1-06 1 13933738 13933738 C G PDPN Silent p.A122A 0.09 TCGA-D9-A3Z1-06 1 144879284 144879284 G A PDE4DIP Missense_Mutation p.S1389L 0.12 deleterious(0) possibly_damaging(0.778) TCGA-D9-A3Z1-06 1 149871861 149871863 ACA - BOLA1 In_Frame_Del p.Q84del 0.24 TCGA-D9-A3Z1-06 1 150482592 150482592 C T ECM1 Missense_Mutation p.P134S 0.10 tolerated(0.09) benign(0.005) TCGA-D9-A3Z1-06 1 151009080 151009080 C T BNIPL 5'UTR 0.45 TCGA-D9-A3Z1-06 1 152191173 152191173 C T HRNR Missense_Mutation p.G978S 0.12 unknown(0) TCGA-D9-A3Z1-06 1 152284169 152284169 C T FLG Missense_Mutation p.G1065R 0.12 probably_damaging(0.986) TCGA-D9-A3Z1-06 1 152882347 152882347 C T IVL Missense_Mutation p.P25L 0.29 tolerated_low_confidence(0.05) unknown(0) TCGA-D9-A3Z1-06 1 153346320 153346320 G A S100A12 Missense_Mutation p.H88Y 0.27 tolerated(0.55) benign(0.37) TCGA-D9-A3Z1-06 1 153955416 153955416 A G RAB13 Intron 0.21 TCGA-D9-A3Z1-06 1 156264705 156264705 G A C1orf85 Silent p.L75L 0.06 TCGA-D9-A3Z1-06 1 158576797 158576797 G A OR10Z1 Missense_Mutation p.G190E 0.28 tolerated(0.63) probably_damaging(0.921) TCGA-D9-A3Z1-06 1 158624447 158624447 G A SPTA1 Missense_Mutation p.T997I 0.29 deleterious(0) probably_damaging(0.958) TCGA-D9-A3Z1-06 1 158687671 158687671 G A OR6K3 Missense_Mutation p.P79S 0.25 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 1 159284299 159284299 G A OR10J3 Missense_Mutation p.R51C 0.24 tolerated(0.35) benign(0.004) TCGA-D9-A3Z1-06 1 160523777 160523777 G A CD84 Missense_Mutation p.T183I 0.23 tolerated(0.06) benign(0.314) TCGA-D9-A3Z1-06 1 160920382 160920382 G A ITLN2 Silent p.F187F 0.10 TCGA-D9-A3Z1-06 1 161192228 161192228 G A AL590714.1 Missense_Mutation p.E55K 0.23 possibly_damaging(0.497) TCGA-D9-A3Z1-06 1 162336962 162336962 C T RP11-565P22.6 Missense_Mutation p.A95V 0.21 tolerated(0.13) benign(0.005) TCGA-D9-A3Z1-06 1 16257964 16257964 C T SPEN Silent p.S1743S 0.15 TCGA-D9-A3Z1-06 1 165218847 165218847 G A LMX1A Silent p.F98F 0.12 TCGA-D9-A3Z1-06 1 167042665 167042665 C T GPA33 Missense_Mutation p.R52Q 0.12 tolerated(0.08) benign(0.231) TCGA-D9-A3Z1-06 1 169699657 169699657 C T SELE Missense_Mutation p.D211N 0.27 tolerated(0.07) benign(0.068) TCGA-D9-A3Z1-06 1 171755035 171755035 G A METTL13 Silent p.E310E 0.39 TCGA-D9-A3Z1-06 1 172628281 172628281 C T FASLG 5'UTR 0.15 TCGA-D9-A3Z1-06 1 173596225 173596225 C T ANKRD45 Silent p.G190G 0.12 TCGA-D9-A3Z1-06 1 17395438 17395438 C T PADI2 3'UTR 0.22 TCGA-D9-A3Z1-06 1 17395508 17395508 G A PADI2 3'UTR 0.15 TCGA-D9-A3Z1-06 1 175332856 175332856 G A TNR Nonsense_Mutation p.R899* 0.28 TCGA-D9-A3Z1-06 1 177226328 177226328 C T BRINP2 Silent p.T159T 0.12 TCGA-D9-A3Z1-06 1 178834383 178834383 C T ANGPTL1 Missense_Mutation p.V177M 0.21 tolerated(0.11) benign(0.01) TCGA-D9-A3Z1-06 1 179603690 179603690 C T TDRD5 Missense_Mutation p.P409S 0.26 tolerated(0.28) benign(0.02) TCGA-D9-A3Z1-06 1 180243486 180243486 C T LHX4 Silent p.S315S 0.28 TCGA-D9-A3Z1-06 1 184787805 184787805 G A FAM129A Silent p.F380F 0.08 TCGA-D9-A3Z1-06 1 18692074 18692074 G A IGSF21 Missense_Mutation p.E300K 0.19 deleterious(0.04) possibly_damaging(0.629) TCGA-D9-A3Z1-06 1 19166503 19166503 G A TAS1R2 Missense_Mutation p.P704S 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A3Z1-06 1 19185996 19185996 G A TAS1R2 Silent p.F53F 0.17 TCGA-D9-A3Z1-06 1 196398831 196398831 G A KCNT2 Missense_Mutation p.S232F 0.21 deleterious(0) probably_damaging(0.973) TCGA-D9-A3Z1-06 1 196967294 196967294 T G CFHR5 Missense_Mutation p.V336G 0.22 deleterious(0.02) benign(0.026) TCGA-D9-A3Z1-06 1 197398637 197398637 C T CRB1 Missense_Mutation p.S912F 0.27 deleterious(0) benign(0.038) TCGA-D9-A3Z1-06 1 202878285 202878285 G A KLHL12 Intron 0.29 TCGA-D9-A3Z1-06 1 210334122 210334122 C T SYT14 Missense_Mutation p.S532F 0.13 deleterious(0.02) possibly_damaging(0.637) TCGA-D9-A3Z1-06 1 210856645 210856645 C T KCNH1 Missense_Mutation p.R983K 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-D9-A3Z1-06 1 212538575 212538575 T C TMEM206 Silent p.A406A 0.28 TCGA-D9-A3Z1-06 1 21810021 21810021 C T NBPF3 3'UTR 0.19 TCGA-D9-A3Z1-06 1 24120591 24120591 C T LYPLA2 Missense_Mutation p.P112S 0.12 tolerated(0.08) probably_damaging(0.998) TCGA-D9-A3Z1-06 1 243437890 243437891 - T SDCCAG8 Frame_Shift_Ins p.V119Cfs*5 0.26 TCGA-D9-A3Z1-06 1 247902471 247902471 C T OR14K1 Silent p.L185L 0.21 TCGA-D9-A3Z1-06 1 247921574 247921574 G A OR1C1 Silent p.I45I 0.24 TCGA-D9-A3Z1-06 1 248059444 248059444 C T OR2W3 Missense_Mutation p.R186W 0.13 deleterious(0) probably_damaging(0.932) TCGA-D9-A3Z1-06 1 248202232 248202232 C T OR2L2 Silent p.L221L 0.13 TCGA-D9-A3Z1-06 1 248813482 248813482 C T OR2T27 Missense_Mutation p.G235E 0.10 deleterious(0.01) benign(0.001) TCGA-D9-A3Z1-06 1 26688384 26688384 G A ZNF683 Missense_Mutation p.H425Y 0.14 deleterious(0.02) possibly_damaging(0.736) TCGA-D9-A3Z1-06 1 27238545 27238545 C T NR0B2 Missense_Mutation p.G189R 0.19 tolerated(0.2) benign(0.005) TCGA-D9-A3Z1-06 1 32377409 32377409 C T PTP4A2 Missense_Mutation p.G70R 0.08 deleterious(0) possibly_damaging(0.856) TCGA-D9-A3Z1-06 1 33402511 33402511 G A RNF19B Missense_Mutation p.P699S 0.21 tolerated_low_confidence(0.27) benign(0.407) TCGA-D9-A3Z1-06 1 34002635 34002635 G A CSMD2 Missense_Mutation p.S3145F 0.14 tolerated(0.06) probably_damaging(0.953) TCGA-D9-A3Z1-06 1 47498936 47498936 G A CYP4X1 Missense_Mutation p.G130R 0.31 deleterious(0.02) probably_damaging(1) TCGA-D9-A3Z1-06 1 47550595 47550595 C T CYP4Z1 Silent p.F239F 0.11 TCGA-D9-A3Z1-06 1 52385653 52385653 C T RAB3B Silent p.K202K 0.31 TCGA-D9-A3Z1-06 1 57192207 57192207 C T C1orf168 Missense_Mutation p.E615K 0.28 tolerated(0.07) possibly_damaging(0.487) TCGA-D9-A3Z1-06 1 57349354 57349354 G A C8A Silent p.K285K 0.26 TCGA-D9-A3Z1-06 1 6166762 6166762 G A CHD5 Missense_Mutation p.P1886S 0.23 tolerated(0.07) possibly_damaging(0.696) TCGA-D9-A3Z1-06 1 6228297 6228297 G A CHD5 Silent p.F40F 0.15 TCGA-D9-A3Z1-06 1 62579959 62579959 C T INADL Intron 0.15 TCGA-D9-A3Z1-06 1 70503813 70503813 C T LRRC7 Missense_Mutation p.P731L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 1 75055151 75055151 G A C1orf173 Intron 0.39 TCGA-D9-A3Z1-06 1 87102522 87102522 G A RP4-651E10.4 Intron 0.15 TCGA-D9-A3Z1-06 1 92772800 92772800 C T RPAP2 Missense_Mutation p.P152L 0.13 tolerated(0.15) possibly_damaging(0.872) TCGA-D9-A3Z1-06 20 14307065 14307065 G A FLRT3 Missense_Mutation p.T363I 0.14 tolerated(0.22) benign(0.002) TCGA-D9-A3Z1-06 20 1617024 1617024 C T SIRPG Silent p.G186G 0.14 TCGA-D9-A3Z1-06 20 1617025 1617025 C T SIRPG Missense_Mutation p.G186E 0.13 deleterious(0.03) possibly_damaging(0.792) TCGA-D9-A3Z1-06 20 2841901 2841901 C T VPS16 Missense_Mutation p.R262W 0.12 deleterious(0.01) probably_damaging(0.91) TCGA-D9-A3Z1-06 20 33879634 33879634 G A FAM83C Silent p.I158I 0.25 TCGA-D9-A3Z1-06 20 48699277 48699277 G A UBE2V1 3'UTR 0.15 TCGA-D9-A3Z1-06 20 61513264 61513264 G A DIDO1 Silent p.T1348T 0.17 TCGA-D9-A3Z1-06 21 35281510 35281510 G A AP000304.12 Silent p.I17I 0.14 TCGA-D9-A3Z1-06 21 36079601 36079601 C T CLIC6 Silent p.I466I 0.12 TCGA-D9-A3Z1-06 21 40642348 40642348 G A BRWD1 Missense_Mutation p.S419F 0.25 deleterious(0.02) benign(0.117) TCGA-D9-A3Z1-06 21 45795725 45795725 C T TRPM2 Missense_Mutation p.P261S 0.09 tolerated(0.05) benign(0.303) TCGA-D9-A3Z1-06 21 45947241 45947241 G A TSPEAR Silent p.F361F 0.12 TCGA-D9-A3Z1-06 21 45949808 45949808 C T TSPEAR Silent p.P221P 0.21 TCGA-D9-A3Z1-06 21 45999696 45999696 G A KRTAP10-5 Missense_Mutation p.P254S 0.13 deleterious(0.02) possibly_damaging(0.906) TCGA-D9-A3Z1-06 21 47614411 47614411 G A LSS Missense_Mutation p.A661V 0.24 tolerated(0.36) possibly_damaging(0.546) TCGA-D9-A3Z1-06 22 17447126 17447126 G A GAB4 Silent p.I384I 0.16 TCGA-D9-A3Z1-06 22 26423569 26423569 C A MYO18B Silent p.P2543P 0.27 TCGA-D9-A3Z1-06 22 28256204 28256204 C A PITPNB Missense_Mutation p.C187F 0.17 tolerated(0.27) benign(0.085) TCGA-D9-A3Z1-06 22 32233067 32233067 C T DEPDC5 Silent p.F751F 0.25 TCGA-D9-A3Z1-06 22 32811929 32811929 G A BPIFC Silent p.F458F 0.17 TCGA-D9-A3Z1-06 22 33402676 33402676 C T SYN3 5'UTR 0.44 TCGA-D9-A3Z1-06 22 39112055 39112055 C T GTPBP1 Missense_Mutation p.R150W 0.17 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 22 39534665 39534665 C T CBX7 Silent p.P74P 0.15 TCGA-D9-A3Z1-06 22 42293128 42293128 C T SREBF2 Silent p.P856P 0.12 TCGA-D9-A3Z1-06 22 43985997 43985997 C T EFCAB6 Missense_Mutation p.G997R 0.14 deleterious(0) possibly_damaging(0.852) TCGA-D9-A3Z1-06 22 46780502 46780502 G A CELSR1 Missense_Mutation p.P2274L 0.12 tolerated(0.17) probably_damaging(0.955) TCGA-D9-A3Z1-06 2 102480495 102480495 T G MAP4K4 Intron 0.14 TCGA-D9-A3Z1-06 2 108487265 108487265 G A RGPD4 Silent p.K935K 0.13 TCGA-D9-A3Z1-06 2 108868931 108868931 C T SULT1C3 Missense_Mutation p.P95S 0.14 deleterious(0.02) possibly_damaging(0.451) TCGA-D9-A3Z1-06 2 120197774 120197774 G A SCTR Silent p.H414H 0.19 TCGA-D9-A3Z1-06 2 120236408 120236408 G A SCTR Missense_Mutation p.R94W 0.13 tolerated(0.28) benign(0.004) TCGA-D9-A3Z1-06 2 121748012 121748012 C T GLI2 Missense_Mutation p.P1508S 0.15 tolerated(0.16) benign(0.005) TCGA-D9-A3Z1-06 2 128477426 128477426 G A WDR33 Missense_Mutation p.P725S 0.22 tolerated_low_confidence(0.25) unknown(0) TCGA-D9-A3Z1-06 2 132021874 132021874 C T POTEE Missense_Mutation p.T949I 0.08 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-D9-A3Z1-06 2 141526828 141526828 C A LRP1B Missense_Mutation p.M1904I 0.10 benign(0.019) TCGA-D9-A3Z1-06 2 141771262 141771262 C T LRP1B Missense_Mutation p.G748E 0.14 probably_damaging(0.931) TCGA-D9-A3Z1-06 2 152500560 152500560 C T NEB Nonsense_Mutation p.W2576* 0.14 TCGA-D9-A3Z1-06 2 153486393 153486393 G A FMNL2 Missense_Mutation p.G842R 0.17 probably_damaging(0.979) TCGA-D9-A3Z1-06 2 15470728 15470728 G A NBAS Silent p.P1447P 0.14 TCGA-D9-A3Z1-06 2 158962718 158962718 G A UPP2 Missense_Mutation p.G114E 0.21 deleterious(0) probably_damaging(0.961) TCGA-D9-A3Z1-06 2 160742967 160742967 C T LY75-CD302 Missense_Mutation p.D293N 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-D9-A3Z1-06 2 167760167 167760167 C T XIRP2 Missense_Mutation p.P59S 0.22 benign(0.01) TCGA-D9-A3Z1-06 2 17773476 17773476 C T VSNL1 Silent p.L45L 0.19 TCGA-D9-A3Z1-06 2 179412221 179412221 C T TTN Missense_Mutation p.E31378K 0.17 TCGA-D9-A3Z1-06 2 179587850 179587850 C T TTN Missense_Mutation p.R7295K 0.12 TCGA-D9-A3Z1-06 2 179593051 179593051 C T TTN Missense_Mutation p.M6500I 0.16 TCGA-D9-A3Z1-06 2 179612217 179612217 G A TTN Intron 0.17 TCGA-D9-A3Z1-06 2 179612942 179612942 A G TTN Intron 0.18 TCGA-D9-A3Z1-06 2 179665314 179665314 G A TTN Missense_Mutation p.P131S 0.19 TCGA-D9-A3Z1-06 2 179720083 179720083 C T CCDC141 Silent p.V1017V 0.18 TCGA-D9-A3Z1-06 2 183099217 183099217 C T PDE1A Missense_Mutation p.R136Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 2 190430274 190430274 G A SLC40A1 Missense_Mutation p.P189L 0.18 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 2 190585360 190585360 C T ANKAR Silent p.L828L 0.16 TCGA-D9-A3Z1-06 2 192700687 192700687 C T SDPR Missense_Mutation p.V414M 0.09 tolerated_low_confidence(0.18) benign(0.071) TCGA-D9-A3Z1-06 2 196671552 196671552 G A DNAH7 Missense_Mutation p.P3363L 0.22 deleterious(0.01) probably_damaging(1) TCGA-D9-A3Z1-06 2 196722110 196722110 G A DNAH7 Missense_Mutation p.S2802L 0.12 tolerated(0.07) benign(0.209) TCGA-D9-A3Z1-06 2 196837173 196837173 C T DNAH7 Silent p.V617V 0.12 TCGA-D9-A3Z1-06 2 197143364 197143364 G T HECW2 Missense_Mutation p.S1008Y 0.15 tolerated(0.06) possibly_damaging(0.903) TCGA-D9-A3Z1-06 2 197672278 197672278 G A C2orf66 Silent p.F81F 0.19 TCGA-D9-A3Z1-06 2 209113112 209113112 C A IDH1 Missense_Mutation p.R132L 0.26 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-D9-A3Z1-06 2 21224993 21224993 G T APOB Missense_Mutation p.S4434Y 0.15 possibly_damaging(0.726) TCGA-D9-A3Z1-06 2 21228996 21228996 C T APOB Missense_Mutation p.E3582K 0.08 benign(0.011) TCGA-D9-A3Z1-06 2 219513367 219513367 G A ZNF142 Silent p.L422L 0.15 TCGA-D9-A3Z1-06 2 220161167 220161167 G A PTPRN Silent p.F794F 0.11 TCGA-D9-A3Z1-06 2 220467231 220467231 C T STK11IP Silent p.L171L 0.11 TCGA-D9-A3Z1-06 2 223917937 223917937 C T KCNE4 Missense_Mutation p.S130F 0.16 deleterious(0) probably_damaging(0.996) TCGA-D9-A3Z1-06 2 230231809 230231809 C T DNER Missense_Mutation p.A628T 0.19 tolerated(0.14) benign(0.025) TCGA-D9-A3Z1-06 2 238249693 238249693 G A COL6A3 Silent p.F2622F 0.18 TCGA-D9-A3Z1-06 2 26696415 26696415 C T OTOF Silent p.R1143R 0.19 TCGA-D9-A3Z1-06 2 28532824 28532824 C T BRE Intron 0.23 TCGA-D9-A3Z1-06 2 29497997 29497997 G A ALK Missense_Mutation p.S670L 0.08 tolerated(0.4) benign(0) TCGA-D9-A3Z1-06 2 37353503 37353503 G A EIF2AK2 Silent p.G279G 0.14 TCGA-D9-A3Z1-06 2 44071655 44071655 G A ABCG8 Missense_Mutation p.D25N 0.22 deleterious_low_confidence(0.03) benign(0.128) TCGA-D9-A3Z1-06 2 44073392 44073392 C T ABCG8 Silent p.I88I 0.15 TCGA-D9-A3Z1-06 2 47221585 47221585 C T TTC7A Silent p.F311F 0.18 TCGA-D9-A3Z1-06 2 70900424 70900424 C G ADD2 Intron 0.11 TCGA-D9-A3Z1-06 2 80646595 80646595 C T CTNNA2 Missense_Mutation p.H387Y 0.15 tolerated(0.05) probably_damaging(0.976) TCGA-D9-A3Z1-06 2 89156773 89156773 G A IGKC 3'UTR 0.27 TCGA-D9-A3Z1-06 2 89309733 89309733 G A IGKV1-9 Silent p.L33L 0.16 TCGA-D9-A3Z1-06 2 99725877 99725877 G A TSGA10 Missense_Mutation p.P9L 0.12 tolerated(0.07) benign(0.104) TCGA-D9-A3Z1-06 3 101481355 101481355 G A CEP97 Missense_Mutation p.R615H 0.12 tolerated(0.12) benign(0.052) TCGA-D9-A3Z1-06 3 10858146 10858146 G A SLC6A11 Missense_Mutation p.E66K 0.12 tolerated(0.29) possibly_damaging(0.492) TCGA-D9-A3Z1-06 3 121647898 121647898 C T SLC15A2 Missense_Mutation p.H471Y 0.16 tolerated(0.27) benign(0.004) TCGA-D9-A3Z1-06 3 121724107 121724107 C T ILDR1 Silent p.K121K 0.14 TCGA-D9-A3Z1-06 3 122003126 122003126 C T CASR Silent p.F785F 0.18 TCGA-D9-A3Z1-06 3 125879757 125879757 C T ALDH1L1 Silent p.E32E 0.17 TCGA-D9-A3Z1-06 3 127340630 127340630 C T MCM2 3'UTR 0.26 TCGA-D9-A3Z1-06 3 128984557 128984557 C T COPG1 Missense_Mutation p.P464S 0.11 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 3 128987354 128987354 C T COPG1 Silent p.I555I 0.21 TCGA-D9-A3Z1-06 3 137717797 137717797 G A CLDN18 Silent p.Q29Q 0.17 TCGA-D9-A3Z1-06 3 137717798 137717798 T G CLDN18 Missense_Mutation p.W30G 0.17 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 3 138187013 138187013 A C ESYT3 Missense_Mutation p.T429P 0.14 tolerated(0.42) benign(0.004) TCGA-D9-A3Z1-06 3 142132991 142132991 G A XRN1 Missense_Mutation p.P527S 0.16 deleterious(0) probably_damaging(0.98) TCGA-D9-A3Z1-06 3 14559293 14559293 C T GRIP2 RNA 0.23 TCGA-D9-A3Z1-06 3 150931563 150931563 C T P2RY14 Missense_Mutation p.R181Q 0.07 tolerated(0.07) benign(0.007) TCGA-D9-A3Z1-06 3 151163907 151163907 C T IGSF10 Missense_Mutation p.E1288K 0.16 tolerated(0.22) benign(0.003) TCGA-D9-A3Z1-06 3 151171225 151171225 C T IGSF10 Nonsense_Mutation p.W221* 0.16 TCGA-D9-A3Z1-06 3 164772993 164772993 C T SI Missense_Mutation p.G501R 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 3 167016129 167016129 C T ZBBX Missense_Mutation p.E615K 0.17 tolerated(0.22) benign(0.081) TCGA-D9-A3Z1-06 3 184106424 184106424 G A CHRD Silent p.G868G 0.16 TCGA-D9-A3Z1-06 3 185407273 185407273 G A IGF2BP2 Missense_Mutation p.P183S 0.14 tolerated(0.24) benign(0.08) TCGA-D9-A3Z1-06 3 2924840 2924840 G A CNTN4 Missense_Mutation p.E222K 0.12 deleterious(0) probably_damaging(0.929) TCGA-D9-A3Z1-06 3 3030098 3030098 C T CNTN4 Silent p.T476T 0.20 TCGA-D9-A3Z1-06 3 36874582 36874582 C T TRANK1 Silent p.V2120V 0.15 TCGA-D9-A3Z1-06 3 38101301 38101301 G A DLEC1 Missense_Mutation p.D211N 0.13 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 3 38347784 38347784 C T SLC22A14 Silent p.F89F 0.21 TCGA-D9-A3Z1-06 3 38545122 38545122 C T EXOG Missense_Mutation p.T157I 0.14 deleterious(0.01) probably_damaging(0.98) TCGA-D9-A3Z1-06 3 38627269 38627269 G A SCN5A Silent p.I900I 0.17 TCGA-D9-A3Z1-06 3 38739356 38739356 C T SCN10A Silent p.L1785L 0.23 TCGA-D9-A3Z1-06 3 38781078 38781078 G A SCN10A Silent p.I736I 0.14 TCGA-D9-A3Z1-06 3 39226570 39226570 C T XIRP1 Missense_Mutation p.G1456E 0.16 tolerated(0.6) benign(0.003) TCGA-D9-A3Z1-06 3 44764047 44764047 C T ZNF502 3'UTR 0.15 TCGA-D9-A3Z1-06 3 47046037 47046037 C T NBEAL2 Missense_Mutation p.T2084I 0.15 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 3 47308679 47308679 G A KIF9 Silent p.I222I 0.14 TCGA-D9-A3Z1-06 3 47385128 47385128 C T KLHL18 Silent p.S474S 0.14 TCGA-D9-A3Z1-06 3 48506018 48506018 C T ATRIP Missense_Mutation p.P671L 0.14 tolerated(0.06) benign(0.004) TCGA-D9-A3Z1-06 3 48506019 48506019 C T ATRIP Silent p.P671P 0.14 TCGA-D9-A3Z1-06 3 48658291 48658291 G A TMEM89 Missense_Mutation p.S155F 0.14 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-D9-A3Z1-06 3 49049985 49049985 C T WDR6 Missense_Mutation p.L370F 0.17 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z1-06 3 49740122 49740122 C T RNF123 Silent p.I562I 0.13 TCGA-D9-A3Z1-06 3 49881982 49881982 G A TRAIP Missense_Mutation p.S91F 0.14 tolerated(0.13) benign(0.053) TCGA-D9-A3Z1-06 3 51971282 51971282 G A RRP9 Missense_Mutation p.S148F 0.19 deleterious(0.01) benign(0.049) TCGA-D9-A3Z1-06 3 52257502 52257502 G A TLR9 Missense_Mutation p.P431L 0.17 deleterious(0) possibly_damaging(0.543) TCGA-D9-A3Z1-06 3 52474019 52474019 G A SEMA3G Silent p.L413L 0.20 TCGA-D9-A3Z1-06 3 52523558 52523558 C T NISCH Missense_Mutation p.P1107L 0.13 tolerated(0.05) probably_damaging(0.982) TCGA-D9-A3Z1-06 3 52821989 52821989 C T ITIH1 Intron 0.12 TCGA-D9-A3Z1-06 3 56330265 56330265 C T ERC2 Missense_Mutation p.E286K 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 3 57130343 57130343 C G IL17RD 3'UTR 0.15 TCGA-D9-A3Z1-06 3 67579591 67579591 T C SUCLG2 Silent p.L82L 0.21 TCGA-D9-A3Z1-06 3 9862352 9862352 G A TTLL3 Missense_Mutation p.D361N 0.18 tolerated(0.1) benign(0.059) TCGA-D9-A3Z1-06 3 9979724 9979724 C T CRELD1 Nonsense_Mutation p.Q132* 0.24 TCGA-D9-A3Z1-06 4 104577352 104577352 T G TACR3 Missense_Mutation p.K296T 0.10 deleterious(0.01) probably_damaging(1) TCGA-D9-A3Z1-06 4 107037521 107037521 G A TBCK Silent p.I750I 0.20 TCGA-D9-A3Z1-06 4 115856396 115856396 C T NDST4 Missense_Mutation p.G501E 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 4 120488300 120488300 C T PDE5A Splice_Site p.X278_splice 0.14 TCGA-D9-A3Z1-06 4 140640956 140640956 C T MAML3 Missense_Mutation p.G980R 0.26 possibly_damaging(0.739) TCGA-D9-A3Z1-06 4 141600146 141600146 G A TBC1D9 Silent p.S267S 0.21 TCGA-D9-A3Z1-06 4 154525457 154525457 C T KIAA0922 Missense_Mutation p.A1098V 0.16 tolerated(0.29) benign(0.03) TCGA-D9-A3Z1-06 4 154625607 154625607 G A TLR2 Silent p.K516K 0.15 TCGA-D9-A3Z1-06 4 15938092 15938092 C T FGFBP1 Missense_Mutation p.G55E 0.17 tolerated(0.97) benign(0.12) TCGA-D9-A3Z1-06 4 162508649 162508649 C T FSTL5 Missense_Mutation p.G325S 0.11 deleterious(0.05) probably_damaging(0.989) TCGA-D9-A3Z1-06 4 166915616 166915616 G A TLL1 Missense_Mutation p.A149T 0.08 tolerated(0.28) benign(0.141) TCGA-D9-A3Z1-06 4 1729758 1729758 C T TACC3 Missense_Mutation p.S210F 0.14 deleterious(0.03) possibly_damaging(0.491) TCGA-D9-A3Z1-06 4 183960166 183960166 C T FAM92A1P2 RNA 0.08 TCGA-D9-A3Z1-06 4 20568969 20568969 C T SLIT2 Missense_Mutation p.P937L 0.14 deleterious(0.02) probably_damaging(0.909) TCGA-D9-A3Z1-06 4 54364889 54364889 G A LNX1 Silent p.V299V 0.14 TCGA-D9-A3Z1-06 4 69682406 69682406 C T UGT2B10 Silent p.F223F 0.14 TCGA-D9-A3Z1-06 4 69683824 69683824 C T UGT2B10 Missense_Mutation p.P266S 0.13 deleterious(0.02) probably_damaging(0.913) TCGA-D9-A3Z1-06 4 70361149 70361149 C T UGT2B4 Missense_Mutation p.R144K 0.20 tolerated(1) benign(0.006) TCGA-D9-A3Z1-06 4 71255498 71255498 G A SMR3B Missense_Mutation p.R58K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-D9-A3Z1-06 4 74309129 74309129 G A AFP Missense_Mutation p.M227I 0.16 tolerated(0.19) benign(0.003) TCGA-D9-A3Z1-06 4 74919860 74919860 G A PPBPP2 RNA 0.19 TCGA-D9-A3Z1-06 4 75312380 75312380 C T AREG Missense_Mutation p.S64F 0.13 deleterious(0) benign(0.273) TCGA-D9-A3Z1-06 4 75314928 75314928 T C AREG Missense_Mutation p.C159R 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A3Z1-06 4 83857207 83857207 G A LIN54 Missense_Mutation p.S591F 0.11 deleterious(0) benign(0.265) TCGA-D9-A3Z1-06 4 89670141 89670141 C T FAM13A Nonsense_Mutation p.W708* 0.18 TCGA-D9-A3Z1-06 4 90170606 90170606 G A GPRIN3 Missense_Mutation p.P219L 0.08 tolerated(0.25) possibly_damaging(0.79) TCGA-D9-A3Z1-06 4 95220697 95220697 C T HPGDS Silent p.R178R 0.26 TCGA-D9-A3Z1-06 4 9982316 9982316 G A SLC2A9 Missense_Mutation p.P194L 0.17 deleterious(0) probably_damaging(0.973) TCGA-D9-A3Z1-06 5 121758671 121758671 C T SNCAIP Missense_Mutation p.S80L 0.23 deleterious(0) probably_damaging(0.99) TCGA-D9-A3Z1-06 5 123983703 123983703 G A ZNF608 Missense_Mutation p.P792S 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-D9-A3Z1-06 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.15 TCGA-D9-A3Z1-06 5 140222866 140222866 C T PCDHA8 Missense_Mutation p.H654Y 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D9-A3Z1-06 5 140222899 140222899 G A PCDHA8 Missense_Mutation p.V665I 0.16 tolerated_low_confidence(0.13) benign(0.214) TCGA-D9-A3Z1-06 5 140482293 140482293 C T PCDHB3 Missense_Mutation p.T687I 0.20 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-D9-A3Z1-06 5 140554752 140554752 G A PCDHB7 Missense_Mutation p.R779K 0.24 tolerated_low_confidence(0.4) benign(0.007) TCGA-D9-A3Z1-06 5 140745193 140745193 C T PCDHGA5 Silent p.L432L 0.20 TCGA-D9-A3Z1-06 5 140754313 140754313 C T PCDHGA6 Silent p.V221V 0.20 TCGA-D9-A3Z1-06 5 150029714 150029714 C T SYNPO Missense_Mutation p.S870F 0.19 tolerated(0.19) possibly_damaging(0.514) TCGA-D9-A3Z1-06 5 150922632 150922633 - T FAT2 Frame_Shift_Ins p.V2686Sfs*8 0.18 TCGA-D9-A3Z1-06 5 170139862 170139862 C T KCNIP1 Silent p.I22I 0.17 TCGA-D9-A3Z1-06 5 170239053 170239053 G A GABRP Missense_Mutation p.E372K 0.14 tolerated(0.26) probably_damaging(0.985) TCGA-D9-A3Z1-06 5 175763826 175763826 C G SIMC1 Missense_Mutation p.L325V 0.15 tolerated(0.07) benign(0.033) TCGA-D9-A3Z1-06 5 176764725 176764725 G A LMAN2 Silent p.P165P 0.26 TCGA-D9-A3Z1-06 5 176764726 176764726 G A LMAN2 Missense_Mutation p.P165L 0.26 deleterious(0) benign(0.403) TCGA-D9-A3Z1-06 5 23521247 23521247 G A PRDM9 Missense_Mutation p.G156E 0.13 tolerated_low_confidence(0.38) benign(0.256) TCGA-D9-A3Z1-06 5 24487988 24487988 C T CDH10 Silent p.R717R 0.17 TCGA-D9-A3Z1-06 5 26988476 26988476 A T CDH9 5'UTR 0.12 TCGA-D9-A3Z1-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.16 deleterious(0) possibly_damaging(0.482) TCGA-D9-A3Z1-06 5 38904066 38904066 A T OSMR Silent p.I358I 0.21 TCGA-D9-A3Z1-06 5 5235132 5235132 C T ADAMTS16 Missense_Mutation p.S619L 0.09 deleterious(0.03) possibly_damaging(0.557) TCGA-D9-A3Z1-06 5 89924433 89924433 G A GPR98 Silent p.A431A 0.15 TCGA-D9-A3Z1-06 5 89938757 89938757 G A GPR98 Missense_Mutation p.D818N 0.17 possibly_damaging(0.811) TCGA-D9-A3Z1-06 5 90136492 90136492 C T GPR98 Missense_Mutation p.P5570L 0.16 possibly_damaging(0.908) TCGA-D9-A3Z1-06 6 106968940 106968940 C T AIM1 Missense_Mutation p.P878L 0.12 deleterious(0.01) possibly_damaging(0.86) TCGA-D9-A3Z1-06 6 109954514 109954514 G A AK9 Missense_Mutation p.R316C 0.16 deleterious(0) possibly_damaging(0.841) TCGA-D9-A3Z1-06 6 117641144 117641144 C T ROS1 Missense_Mutation p.E1943K 0.21 deleterious(0.01) benign(0.125) TCGA-D9-A3Z1-06 6 124979345 124979345 T C NKAIN2 Missense_Mutation p.I96T 0.21 deleterious(0) benign(0.272) TCGA-D9-A3Z1-06 6 126080376 126080376 C T HEY2 Missense_Mutation p.P148S 0.12 deleterious(0.04) probably_damaging(0.928) TCGA-D9-A3Z1-06 6 127912721 127912721 G A C6orf58 Missense_Mutation p.R316K 0.24 tolerated_low_confidence(0.81) benign(0.004) TCGA-D9-A3Z1-06 6 128298072 128298072 G A PTPRK Missense_Mutation p.S1286F 0.16 deleterious(0) benign(0.328) TCGA-D9-A3Z1-06 6 129380963 129380963 G A LAMA2 Silent p.K106K 0.24 TCGA-D9-A3Z1-06 6 129712776 129712776 G A LAMA2 Missense_Mutation p.E1738K 0.14 tolerated(0.23) benign(0.02) TCGA-D9-A3Z1-06 6 130762860 130762860 G A TMEM200A Missense_Mutation p.M431I 0.15 tolerated(0.83) benign(0) TCGA-D9-A3Z1-06 6 136589404 136589404 C T BCLAF1 Missense_Mutation p.E765K 0.06 deleterious(0.03) possibly_damaging(0.486) TCGA-D9-A3Z1-06 6 152697632 152697632 G A SYNE1 Nonsense_Mutation p.R3070* 0.24 TCGA-D9-A3Z1-06 6 158541537 158541537 G A SERAC1 Silent p.I362I 0.14 TCGA-D9-A3Z1-06 6 159420872 159420872 C T RSPH3 Missense_Mutation p.G46E 0.14 deleterious_low_confidence(0.02) benign(0) TCGA-D9-A3Z1-06 6 160913983 160913983 G A LPAL2 RNA 0.15 TCGA-D9-A3Z1-06 6 161160173 161160173 G A PLG Missense_Mutation p.E651K 0.18 tolerated(0.78) benign(0.007) TCGA-D9-A3Z1-06 6 24520729 24520729 C T ALDH5A1 Missense_Mutation p.A337V 0.16 deleterious(0.01) possibly_damaging(0.879) TCGA-D9-A3Z1-06 6 26431764 26431764 C T BTN2A3P RNA 0.14 TCGA-D9-A3Z1-06 6 28967304 28967304 C T ZNF311 Silent p.K90K 0.22 TCGA-D9-A3Z1-06 6 30128480 30128480 C T TRIM10 Silent p.E52E 0.11 TCGA-D9-A3Z1-06 6 30879728 30879728 C T GTF2H4 Intron 0.10 TCGA-D9-A3Z1-06 6 31560578 31560578 C T NCR3 5'UTR 0.15 TCGA-D9-A3Z1-06 6 33154568 33154568 G A COL11A2 Missense_Mutation p.P212S 0.15 probably_damaging(0.995) TCGA-D9-A3Z1-06 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.09 deleterious(0.01) possibly_damaging(0.883) TCGA-D9-A3Z1-06 6 42152540 42152540 G A GUCA1B 3'UTR 0.15 TCGA-D9-A3Z1-06 6 43250705 43250705 G A TTBK1 Missense_Mutation p.E743K 0.19 benign(0.048) TCGA-D9-A3Z1-06 6 44255445 44255445 G A TCTE1 Missense_Mutation p.P40S 0.17 tolerated(0.09) benign(0.003) TCGA-D9-A3Z1-06 6 47846494 47846494 C T PTCHD4 Missense_Mutation p.E696K 0.27 tolerated(0.13) probably_damaging(0.982) TCGA-D9-A3Z1-06 6 51497504 51497504 G A PKHD1 Nonsense_Mutation p.R3842* 0.14 TCGA-D9-A3Z1-06 6 51929785 51929785 C T PKHD1 Missense_Mutation p.G315E 0.21 tolerated(0.08) benign(0.25) TCGA-D9-A3Z1-06 6 54095647 54095647 C T MLIP Silent p.L417L 0.17 TCGA-D9-A3Z1-06 6 55039417 55039417 C T HCRTR2 Missense_Mutation p.P11L 0.19 tolerated_low_confidence(0.25) benign(0.001) TCGA-D9-A3Z1-06 6 56474102 56474102 C T DST Intron 0.19 TCGA-D9-A3Z1-06 6 73751729 73751729 G A KCNQ5 Missense_Mutation p.R187Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z1-06 6 83938545 83938545 C T ME1 Missense_Mutation p.G378R 0.15 deleterious(0) probably_damaging(0.997) TCGA-D9-A3Z1-06 6 84025070 84025070 A C ME1 Nonsense_Mutation p.Y221* 0.15 TCGA-D9-A3Z1-06 6 84233586 84233586 C T PRSS35 Silent p.F142F 0.14 TCGA-D9-A3Z1-06 6 94120172 94120172 G A EPHA7 Intron 0.11 TCGA-D9-A3Z1-06 6 99817684 99817684 A G COQ3 Missense_Mutation p.V301A 0.16 deleterious(0.02) benign(0.265) TCGA-D9-A3Z1-06 7 100839601 100839601 G A MOGAT3 Silent p.G246G 0.11 TCGA-D9-A3Z1-06 7 101063357 101063357 G A COL26A1 Silent p.P86P 0.12 TCGA-D9-A3Z1-06 7 102087367 102087367 C T ORAI2 Silent p.F211F 0.16 TCGA-D9-A3Z1-06 7 103301844 103301844 G A RELN Silent p.L474L 0.20 TCGA-D9-A3Z1-06 7 115581000 115581000 G A TFEC Intron 0.14 TCGA-D9-A3Z1-06 7 122337818 122337818 T C RNF133 3'UTR 0.18 TCGA-D9-A3Z1-06 7 129679332 129679332 G A ZC3HC1 Silent p.F155F 0.09 TCGA-D9-A3Z1-06 7 129951961 129951961 C T CPA4 Silent p.V359V 0.11 TCGA-D9-A3Z1-06 7 138591807 138591807 C T KIAA1549 Silent p.R1106R 0.11 TCGA-D9-A3Z1-06 7 141629867 141629867 G A CLEC5A 3'UTR 0.22 TCGA-D9-A3Z1-06 7 142606682 142606682 G A TRPV5 Silent p.F623F 0.13 TCGA-D9-A3Z1-06 7 142749631 142749631 C T OR6V1 Missense_Mutation p.S65F 0.14 deleterious(0) probably_damaging(0.995) TCGA-D9-A3Z1-06 7 143056427 143056427 G A FAM131B Missense_Mutation p.S87L 0.14 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z1-06 7 143632412 143632412 C T OR2F2 Silent p.S29S 0.14 TCGA-D9-A3Z1-06 7 146471424 146471424 C T CNTNAP2 Silent p.S53S 0.15 TCGA-D9-A3Z1-06 7 1474218 1474218 G A MICALL2 3'UTR 0.14 TCGA-D9-A3Z1-06 7 150776809 150776809 G A FASTK Missense_Mutation p.P95S 0.30 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-D9-A3Z1-06 7 17349574 17349574 C T AHR Missense_Mutation p.P27L 0.14 deleterious(0.03) probably_damaging(0.924) TCGA-D9-A3Z1-06 7 2617906 2617906 C T IQCE Silent p.L166L 0.11 TCGA-D9-A3Z1-06 7 2638229 2638229 G A IQCE Missense_Mutation p.R524K 0.17 tolerated(0.43) possibly_damaging(0.66) TCGA-D9-A3Z1-06 7 39247144 39247144 C T POU6F2 Missense_Mutation p.L146F 0.11 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D9-A3Z1-06 7 43477637 43477637 G A HECW1 Silent p.L279L 0.14 TCGA-D9-A3Z1-06 7 43918339 43918339 G A URGCP Silent p.S241S 0.11 TCGA-D9-A3Z1-06 7 44228513 44228513 C T GCK Missense_Mutation p.E14K 0.15 tolerated(0.95) benign(0) TCGA-D9-A3Z1-06 7 6426893 6426893 C T RAC1 Missense_Mutation p.P29L 0.13 deleterious(0.02) possibly_damaging(0.839) TCGA-D9-A3Z1-06 7 75228542 75228542 A C HIP1 Missense_Mutation p.I48M 0.16 deleterious(0) probably_damaging(0.996) TCGA-D9-A3Z1-06 7 77756558 77756558 G A MAGI2 Missense_Mutation p.P1127S 0.10 tolerated(0.07) benign(0.006) TCGA-D9-A3Z1-06 7 81331786 81331786 C T HGF 3'UTR 0.16 TCGA-D9-A3Z1-06 7 94039091 94039091 C T COL1A2 Silent p.G331G 0.11 TCGA-D9-A3Z1-06 7 99129800 99129800 C T ZKSCAN5 Silent p.L816L 0.15 TCGA-D9-A3Z1-06 7 99312238 99312238 T C CYP3A7 Missense_Mutation p.I246M 0.14 tolerated(0.3) benign(0.026) TCGA-D9-A3Z1-06 7 99799824 99799824 C T STAG3 Silent p.L808L 0.17 TCGA-D9-A3Z1-06 8 102381374 102381374 G A NACAP1 RNA 0.18 TCGA-D9-A3Z1-06 8 103664119 103664119 G A KLF10 Silent p.L147L 0.16 TCGA-D9-A3Z1-06 8 105405110 105405110 C T DPYS Missense_Mutation p.E449K 0.18 tolerated(0.06) benign(0.299) TCGA-D9-A3Z1-06 8 113246681 113246681 G T CSMD3 Silent p.R3551R 0.12 TCGA-D9-A3Z1-06 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.12 TCGA-D9-A3Z1-06 8 113332127 113332127 T A CSMD3 Intron 0.14 TCGA-D9-A3Z1-06 8 119938736 119938736 G A TNFRSF11B Nonsense_Mutation p.Q272* 0.08 TCGA-D9-A3Z1-06 8 125094565 125094565 C T FER1L6 Silent p.S1419S 0.14 TCGA-D9-A3Z1-06 8 131949411 131949411 G A ADCY8 Silent p.D463D 0.15 TCGA-D9-A3Z1-06 8 14022179 14022179 A T SGCZ Missense_Mutation p.F153I 0.14 deleterious(0) benign(0.435) TCGA-D9-A3Z1-06 8 21905578 21905578 G A FGF17 Missense_Mutation p.G157R 0.18 deleterious(0) possibly_damaging(0.889) TCGA-D9-A3Z1-06 8 23113987 23113987 C T CHMP7 Silent p.A224A 0.19 TCGA-D9-A3Z1-06 8 24199186 24199186 C T ADAM28 Silent p.F582F 0.14 TCGA-D9-A3Z1-06 8 33247056 33247056 G A FUT10 Missense_Mutation p.P213S 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A3Z1-06 8 43211924 43211924 C T POTEA RNA 0.15 TCGA-D9-A3Z1-06 8 55060096 55060096 C T MRPL15 Silent p.L236L 0.14 TCGA-D9-A3Z1-06 8 73480163 73480163 G A KCNB2 Missense_Mutation p.R65Q 0.14 deleterious(0.04) probably_damaging(0.941) TCGA-D9-A3Z1-06 8 77768045 77768045 G A ZFHX4 Missense_Mutation p.G2963E 0.15 probably_damaging(0.999) TCGA-D9-A3Z1-06 8 8235333 8235333 G A SGK223 Missense_Mutation p.P196S 0.14 benign(0.004) TCGA-D9-A3Z1-06 8 87679330 87679330 G A CNGB3 Silent p.V225V 0.23 TCGA-D9-A3Z1-06 8 88365929 88365929 C T CNBD1 Silent p.S406S 0.16 TCGA-D9-A3Z1-06 8 92307925 92307925 G A SLC26A7 Silent p.V157V 0.09 TCGA-D9-A3Z1-06 8 93026826 93026826 G A RUNX1T1 Missense_Mutation p.T161I 0.13 deleterious(0.01) benign(0.148) TCGA-D9-A3Z1-06 8 93026961 93026961 G A RUNX1T1 Missense_Mutation p.S116F 0.14 deleterious(0.02) possibly_damaging(0.845) TCGA-D9-A3Z1-06 8 95523659 95523659 G A KIAA1429 Silent p.P1048P 0.09 TCGA-D9-A3Z1-06 9 100895494 100895494 C T CORO2A Missense_Mutation p.M158I 0.17 tolerated(0.88) possibly_damaging(0.89) TCGA-D9-A3Z1-06 9 103348617 103348617 C T MURC Missense_Mutation p.P327S 0.10 tolerated(0.11) benign(0.004) TCGA-D9-A3Z1-06 9 104449164 104449164 C T GRIN3A Missense_Mutation p.E340K 0.13 tolerated(0.08) benign(0.022) TCGA-D9-A3Z1-06 9 107288690 107288690 G A OR13C4 Silent p.L267L 0.24 TCGA-D9-A3Z1-06 9 113205879 113205879 C T SVEP1 Missense_Mutation p.D1529N 0.23 probably_damaging(0.995) TCGA-D9-A3Z1-06 9 114296129 114296129 G A ZNF483 Silent p.R204R 0.17 TCGA-D9-A3Z1-06 9 116041300 116041300 G A PRPF4 Missense_Mutation p.R95Q 0.14 deleterious(0.04) benign(0.352) TCGA-D9-A3Z1-06 9 120475859 120475859 G A TLR4 Missense_Mutation p.E485K 0.20 tolerated(0.05) benign(0.001) TCGA-D9-A3Z1-06 9 120476830 120476830 G A TLR4 Nonsense_Mutation p.W808* 0.10 TCGA-D9-A3Z1-06 9 124064440 124064440 G C GSN Missense_Mutation p.W115S 0.13 deleterious(0) probably_damaging(0.973) TCGA-D9-A3Z1-06 9 130700157 130700157 C T DPM2 5'UTR 0.32 TCGA-D9-A3Z1-06 9 131191038 131191038 G T CERCAM Missense_Mutation p.D297Y 0.10 deleterious(0) possibly_damaging(0.872) TCGA-D9-A3Z1-06 9 131670364 131670364 C T LRRC8A Silent p.T307T 0.10 TCGA-D9-A3Z1-06 9 132837948 132837948 T A GPR107 Missense_Mutation p.F59I 0.08 deleterious(0) probably_damaging(0.959) TCGA-D9-A3Z1-06 9 135263535 135263535 A G TTF1 Missense_Mutation p.L768P 0.07 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z1-06 9 135277532 135277532 G A TTF1 Missense_Mutation p.S226F 0.15 tolerated_low_confidence(0.74) possibly_damaging(0.831) TCGA-D9-A3Z1-06 9 137671975 137671975 G A COL5A1 Missense_Mutation p.G805S 0.16 unknown(0) TCGA-D9-A3Z1-06 9 137703363 137703363 G A COL5A1 Missense_Mutation p.R1203Q 0.20 unknown(0) TCGA-D9-A3Z1-06 9 138515848 138515848 C T GLT6D1 3'UTR 0.23 TCGA-D9-A3Z1-06 9 139272466 139272466 C T SNAPC4 Silent p.L1271L 0.29 TCGA-D9-A3Z1-06 9 140146528 140146528 C T C9orf173 Missense_Mutation p.S115F 0.17 tolerated(0.08) probably_damaging(0.983) TCGA-D9-A3Z1-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.25 TCGA-D9-A3Z1-06 9 27949342 27949342 G A LINGO2 Missense_Mutation p.S443F 0.14 tolerated(0.72) benign(0.007) TCGA-D9-A3Z1-06 9 79321756 79321756 C T PRUNE2 Missense_Mutation p.E1812K 0.21 tolerated(0.18) benign(0.027) TCGA-D9-A3Z1-06 9 79322730 79322730 C T PRUNE2 Missense_Mutation p.R1487Q 0.19 tolerated(1) benign(0.001) TCGA-D9-A3Z1-06 9 84532751 84532751 C T SPATA31D5P RNA 0.11 TCGA-D9-A3Z1-06 9 990217 990217 G A DMRT3 Missense_Mutation p.G211R 0.15 deleterious(0.02) possibly_damaging(0.652) TCGA-D9-A3Z1-06 X 105905473 105905473 C T CXorf57 Missense_Mutation p.P736L 0.36 tolerated(0.32) benign(0.051) TCGA-D9-A3Z1-06 X 114357726 114357726 C T LRCH2 Missense_Mutation p.G627R 0.33 tolerated(0.31) possibly_damaging(0.649) TCGA-D9-A3Z1-06 X 144906302 144906302 T A SLITRK2 Missense_Mutation p.S787T 0.29 tolerated(0.12) benign(0.045) TCGA-D9-A3Z1-06 X 151869752 151869752 C T MAGEA6 Missense_Mutation p.P148S 0.30 deleterious(0.02) possibly_damaging(0.821) TCGA-D9-A3Z1-06 X 153416416 153416416 C T OPN1LW Missense_Mutation p.S134F 0.29 deleterious(0) probably_damaging(0.988) TCGA-D9-A3Z1-06 X 154159698 154159698 G C F8 Missense_Mutation p.D789E 0.27 tolerated(0.53) benign(0.003) TCGA-D9-A3Z1-06 X 20044017 20044017 G A MAP7D2 Missense_Mutation p.P354L 0.28 tolerated(0.2) benign(0.091) TCGA-D9-A3Z1-06 X 26212683 26212683 C T MAGEB6 Silent p.T240T 0.35 TCGA-D9-A3Z1-06 X 3261843 3261843 G A MXRA5 Missense_Mutation p.S11F 0.43 deleterious(0) possibly_damaging(0.838) TCGA-D9-A3Z1-06 X 47434645 47434645 C T SYN1 Missense_Mutation p.G396D 0.47 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z1-06 X 47434646 47434646 C T SYN1 Missense_Mutation p.G396S 0.42 deleterious(0) probably_damaging(0.99) TCGA-D9-A3Z1-06 X 52825665 52825665 C T SPANXN5 Missense_Mutation p.E28K 0.25 tolerated(0.2) benign(0.152) TCGA-D9-A3Z1-06 X 53117185 53117185 C T TSPYL2 3'UTR 0.18 TCGA-D9-A3Z1-06 X 53117186 53117186 C T TSPYL2 3'UTR 0.18 TCGA-D9-A3Z1-06 X 53643934 53643934 G A HUWE1 Missense_Mutation p.L652F 0.27 benign(0.444) TCGA-D9-A3Z1-06 X 72674276 72674276 C T CDX4 Missense_Mutation p.S237F 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A3Z1-06 X 73062663 73062663 G A XIST RNA 0.12 TCGA-D9-A3Z1-06 X 75003616 75003616 C T MAGEE2 Nonsense_Mutation p.W424* 0.27 TCGA-D9-A3Z1-06 Y 14954330 14954330 A T USP9Y Missense_Mutation p.H2126L 0.32 deleterious(0) possibly_damaging(0.621) TCGA-D9-A3Z1-06 Y 14954331 14954331 C T USP9Y Silent p.H2126H 0.31 TCGA-D9-A3Z1-06 Y 5605454 5605454 G A PCDH11Y Missense_Mutation p.C1165Y 0.11 deleterious_low_confidence(0.03) benign(0.216) TCGA-D9-A3Z3-06 10 16990582 16990582 G A CUBN Missense_Mutation p.P1702S 0.10 deleterious(0.01) probably_damaging(1) TCGA-D9-A3Z3-06 10 37508414 37508414 G A ANKRD30A Silent p.R1202R 0.31 TCGA-D9-A3Z3-06 10 51465711 51465711 G A AGAP7 Missense_Mutation p.H249Y 0.22 deleterious(0.04) benign(0.191) TCGA-D9-A3Z3-06 10 58117851 58117851 C - ZWINT 3'UTR 0.34 TCGA-D9-A3Z3-06 10 6472801 6472801 C T PRKCQ Missense_Mutation p.E646K 0.35 tolerated(0.63) benign(0.001) TCGA-D9-A3Z3-06 11 116691731 116691731 C T APOA4 Missense_Mutation p.R348K 0.45 tolerated(0.07) possibly_damaging(0.596) TCGA-D9-A3Z3-06 11 119043077 119043077 C T NLRX1 Missense_Mutation p.P28L 0.31 deleterious_low_confidence(0.02) benign(0.013) TCGA-D9-A3Z3-06 11 121000846 121000846 C T TECTA Missense_Mutation p.S956F 0.53 deleterious(0.01) possibly_damaging(0.701) TCGA-D9-A3Z3-06 11 128333448 128333448 A C ETS1 Missense_Mutation p.W400G 0.45 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 11 18956224 18956224 G A MRGPRX1 Silent p.I36I 0.22 TCGA-D9-A3Z3-06 11 62299059 62299059 G A AHNAK Missense_Mutation p.P944S 0.42 probably_damaging(0.999) TCGA-D9-A3Z3-06 11 65147697 65147697 G A SLC25A45 Intron 0.33 TCGA-D9-A3Z3-06 11 681007 681007 G A DEAF1 Missense_Mutation p.S318F 0.29 deleterious(0.03) benign(0.094) TCGA-D9-A3Z3-06 11 6977370 6977370 T C ZNF215 Missense_Mutation p.F388L 0.49 deleterious(0) probably_damaging(0.989) TCGA-D9-A3Z3-06 11 70179621 70179621 G A PPFIA1 Missense_Mutation p.E420K 0.20 deleterious(0.01) possibly_damaging(0.84) TCGA-D9-A3Z3-06 11 71941316 71941316 G C INPPL1 Splice_Site p.X364_splice 0.18 TCGA-D9-A3Z3-06 11 7960730 7960730 A C OR10A3 Missense_Mutation p.F113C 0.41 tolerated(0.29) benign(0.049) TCGA-D9-A3Z3-06 12 133502309 133502309 T A ZNF605 Missense_Mutation p.I557F 0.34 deleterious(0.01) benign(0.208) TCGA-D9-A3Z3-06 12 18837109 18837109 C T PLCZ1 Missense_Mutation p.E566K 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A3Z3-06 12 31944580 31944580 G A H3F3C 3'UTR 0.32 TCGA-D9-A3Z3-06 12 55794578 55794578 C T OR6C65 Missense_Mutation p.T89I 0.23 deleterious_low_confidence(0.02) benign(0.043) TCGA-D9-A3Z3-06 12 55886345 55886345 C A OR6C68 Missense_Mutation p.Q62K 0.27 tolerated_low_confidence(0.24) benign(0.023) TCGA-D9-A3Z3-06 12 56087025 56087025 T C ITGA7 Missense_Mutation p.N875S 0.31 deleterious(0.03) possibly_damaging(0.879) TCGA-D9-A3Z3-06 12 56515570 56515570 C T ZC3H10 Silent p.I408I 0.22 TCGA-D9-A3Z3-06 12 5915235 5915235 C T ANO2 Missense_Mutation p.D321N 0.38 tolerated(0.12) possibly_damaging(0.894) TCGA-D9-A3Z3-06 13 28608113 28608113 G A FLT3 Missense_Mutation p.S618L 0.32 deleterious(0) possibly_damaging(0.842) TCGA-D9-A3Z3-06 14 106791075 106791075 G A IGHV3-30 Missense_Mutation p.S94F 0.08 deleterious_low_confidence(0) benign(0.444) TCGA-D9-A3Z3-06 14 22509243 22509243 C T TRAV20 Missense_Mutation p.P61S 0.20 tolerated(0.07) benign(0.087) TCGA-D9-A3Z3-06 14 33836389 33836389 A C NPAS3 Intron 0.40 TCGA-D9-A3Z3-06 14 94780401 94780401 G A SERPINA6 Silent p.L195L 0.23 TCGA-D9-A3Z3-06 15 27193269 27193269 C T GABRA5 Silent p.D426D 0.16 TCGA-D9-A3Z3-06 15 53049717 53049717 C T ONECUT1 3'UTR 0.22 TCGA-D9-A3Z3-06 15 54825182 54825182 G A UNC13C Missense_Mutation p.G1872R 0.41 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-D9-A3Z3-06 15 65298462 65298462 G A MTFMT Missense_Mutation p.S294L 0.19 tolerated(0.54) benign(0.005) TCGA-D9-A3Z3-06 15 72579703 72579703 G A CELF6 Missense_Mutation p.A450V 0.29 deleterious(0) benign(0.209) TCGA-D9-A3Z3-06 16 20944735 20944735 G A DNAH3 Missense_Mutation p.T4031M 0.31 tolerated(0.11) benign(0.034) TCGA-D9-A3Z3-06 16 3832835 3832835 G A CREBBP Missense_Mutation p.P475S 0.32 benign(0.168) TCGA-D9-A3Z3-06 17 10350413 10350413 G A MYH4 Silent p.L1696L 0.32 TCGA-D9-A3Z3-06 17 1584067 1584067 A T PRPF8 Missense_Mutation p.Y351N 0.27 deleterious(0.04) benign(0.019) TCGA-D9-A3Z3-06 17 27210166 27210166 G A FLOT2 Silent p.V102V 0.30 TCGA-D9-A3Z3-06 17 28445171 28445171 G A NSRP1 Missense_Mutation p.D32N 0.30 deleterious(0.02) possibly_damaging(0.829) TCGA-D9-A3Z3-06 17 3181519 3181519 G A OR3A2 Silent p.I237I 0.39 TCGA-D9-A3Z3-06 17 35518799 35518799 G A ACACA Missense_Mutation p.P1749S 0.25 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 17 36997591 36997591 C T C17orf98 Missense_Mutation p.D18N 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-D9-A3Z3-06 17 36997592 36997592 C T C17orf98 Silent p.L17L 0.23 TCGA-D9-A3Z3-06 17 39341172 39341172 C T KRTAP4-1 5'UTR 0.31 TCGA-D9-A3Z3-06 17 42928614 42928614 G A EFTUD2 3'UTR 0.21 TCGA-D9-A3Z3-06 17 45897726 45897726 G A OSBPL7 5'UTR 0.27 TCGA-D9-A3Z3-06 17 57665412 57665412 C T DHX40 Missense_Mutation p.P527L 0.18 deleterious(0.05) probably_damaging(0.978) TCGA-D9-A3Z3-06 17 63822421 63822421 C T CEP112 Intron 0.31 TCGA-D9-A3Z3-06 17 71335029 71335029 G A SDK2 Silent p.S2072S 0.30 TCGA-D9-A3Z3-06 17 7227580 7227580 T C NEURL4 Missense_Mutation p.T637A 0.28 tolerated(0.12) possibly_damaging(0.689) TCGA-D9-A3Z3-06 17 74475323 74475323 C A RHBDF2 Missense_Mutation p.W132C 0.31 tolerated(0.25) benign(0.02) TCGA-D9-A3Z3-06 17 7701964 7701964 C T DNAH2 Silent p.F2829F 0.46 TCGA-D9-A3Z3-06 18 14511989 14511989 A G POTEC Missense_Mutation p.S513P 0.21 deleterious_low_confidence(0.01) probably_damaging(0.939) TCGA-D9-A3Z3-06 18 22806092 22806092 T C ZNF521 Missense_Mutation p.N597S 0.37 tolerated(0.22) probably_damaging(0.986) TCGA-D9-A3Z3-06 18 28574094 28574094 G A DSC3 3'UTR 0.27 TCGA-D9-A3Z3-06 18 56586580 56586580 C T ZNF532 Missense_Mutation p.S354F 0.21 deleterious(0) probably_damaging(0.95) TCGA-D9-A3Z3-06 18 67753871 67753871 A C RTTN Missense_Mutation p.I1451S 0.29 tolerated(0.67) benign(0.021) TCGA-D9-A3Z3-06 19 30935484 30935484 G A ZNF536 Missense_Mutation p.E339K 0.31 tolerated(0.24) probably_damaging(0.991) TCGA-D9-A3Z3-06 19 48806008 48806008 C T CCDC114 Missense_Mutation p.E358K 0.35 tolerated(0.12) benign(0.1) TCGA-D9-A3Z3-06 19 49967975 49967975 C T ALDH16A1 Silent p.L508L 0.41 TCGA-D9-A3Z3-06 19 6908743 6908743 A G EMR1 Missense_Mutation p.D361G 0.40 tolerated(0.16) benign(0.287) TCGA-D9-A3Z3-06 1 111215722 111215722 C T KCNA3 Silent p.K570K 0.37 TCGA-D9-A3Z3-06 1 11576105 11576105 C T PTCHD2 Missense_Mutation p.H546Y 0.24 deleterious(0.02) probably_damaging(0.941) TCGA-D9-A3Z3-06 1 149871724 149871724 A C BOLA1 Missense_Mutation p.T38P 0.18 tolerated(0.22) benign(0.251) TCGA-D9-A3Z3-06 1 149871725 149871725 C T BOLA1 Missense_Mutation p.T38M 0.18 tolerated(0.1) benign(0.067) TCGA-D9-A3Z3-06 1 156146313 156146313 C T SEMA4A Missense_Mutation p.T604I 0.17 tolerated(0.28) benign(0.017) TCGA-D9-A3Z3-06 1 179520266 179520266 C A NPHS2 3'UTR 0.41 TCGA-D9-A3Z3-06 1 183543646 183543646 G A NCF2 Silent p.I159I 0.26 TCGA-D9-A3Z3-06 1 186307184 186307184 A C TPR Missense_Mutation p.L1448R 0.16 possibly_damaging(0.766) TCGA-D9-A3Z3-06 1 201352329 201352329 G A LAD1 Missense_Mutation p.S420F 0.20 deleterious(0) probably_damaging(0.993) TCGA-D9-A3Z3-06 1 203465179 203465179 G A OPTC Missense_Mutation p.E16K 0.42 tolerated(0.28) benign(0.048) TCGA-D9-A3Z3-06 1 207135788 207135788 T C FCAMR Missense_Mutation p.Y141C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z3-06 1 215799198 215799198 C T USH2A Silent p.E5178E 0.44 TCGA-D9-A3Z3-06 1 23232506 23232506 G A EPHB2 Missense_Mutation p.D599N 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 1 232629309 232629309 G A SIPA1L2 Silent p.S527S 0.23 TCGA-D9-A3Z3-06 1 245861536 245861536 G A KIF26B Missense_Mutation p.E1985K 0.24 deleterious(0) unknown(0) TCGA-D9-A3Z3-06 1 247013018 247013018 C T AHCTF1 Missense_Mutation p.S2106N 0.20 deleterious(0.03) benign(0.002) TCGA-D9-A3Z3-06 1 247695394 247695394 C T OR2C3 Silent p.Q140Q 0.47 TCGA-D9-A3Z3-06 1 248402594 248402594 C T OR2M4 Missense_Mutation p.R122C 0.19 tolerated(0.06) benign(0.012) TCGA-D9-A3Z3-06 1 248436418 248436418 C T OR2T33 Silent p.K233K 0.22 TCGA-D9-A3Z3-06 1 248814039 248814039 G A OR2T27 Silent p.I49I 0.19 TCGA-D9-A3Z3-06 1 32196407 32196407 G A BAI2 Silent p.S1458S 0.34 TCGA-D9-A3Z3-06 1 38226907 38226907 G A EPHA10 Intron 0.30 TCGA-D9-A3Z3-06 1 47283859 47283859 C T CYP4B1 Silent p.A443A 0.27 TCGA-D9-A3Z3-06 1 57395187 57395187 A G C8B Missense_Mutation p.S556P 0.34 tolerated(1) benign(0.003) TCGA-D9-A3Z3-06 1 94652062 94652062 T C ARHGAP29 Silent p.S591S 0.06 TCGA-D9-A3Z3-06 20 13029820 13029820 C T SPTLC3 Intron 0.28 TCGA-D9-A3Z3-06 20 21492807 21492807 C T NKX2-2 Missense_Mutation p.M192I 0.32 deleterious(0.03) benign(0.022) TCGA-D9-A3Z3-06 20 36869182 36869182 G A KIAA1755 Missense_Mutation p.P451S 0.36 tolerated(0.78) benign(0.021) TCGA-D9-A3Z3-06 20 43052726 43052726 G A HNF4A Missense_Mutation p.D321N 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-D9-A3Z3-06 20 51871160 51871160 C T TSHZ2 Missense_Mutation p.S388F 0.32 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z3-06 21 46011539 46011539 G A KRTAP10-6 Missense_Mutation p.S276F 0.26 deleterious(0.02) unknown(0) TCGA-D9-A3Z3-06 22 37211171 37211171 C T PVALB Missense_Mutation p.G57D 0.38 deleterious(0.02) possibly_damaging(0.506) TCGA-D9-A3Z3-06 22 37770283 37770283 G A ELFN2 Missense_Mutation p.S431F 0.30 deleterious(0.01) possibly_damaging(0.714) TCGA-D9-A3Z3-06 22 38086701 38086701 T C NOL12 Intron 0.28 TCGA-D9-A3Z3-06 2 111666450 111666450 G A ACOXL Silent p.L291L 0.28 TCGA-D9-A3Z3-06 2 128047035 128047035 G C ERCC3 Missense_Mutation p.R234G 0.20 tolerated(0.48) benign(0) TCGA-D9-A3Z3-06 2 136566630 136566630 G A LCT Missense_Mutation p.A1096V 0.34 tolerated(1) benign(0.013) TCGA-D9-A3Z3-06 2 149247692 149247692 C T MBD5 Silent p.F1264F 0.27 TCGA-D9-A3Z3-06 2 152554150 152554150 C T NEB Missense_Mutation p.E389K 0.21 possibly_damaging(0.485) TCGA-D9-A3Z3-06 2 179433209 179433209 C T TTN Missense_Mutation p.E25884K 0.24 TCGA-D9-A3Z3-06 2 179505268 179505268 C T TTN Missense_Mutation p.V13575M 0.39 TCGA-D9-A3Z3-06 2 179702223 179702223 G A CCDC141 Silent p.S1241S 0.27 TCGA-D9-A3Z3-06 2 185798382 185798382 C T ZNF804A Missense_Mutation p.S103F 0.43 deleterious(0) probably_damaging(0.969) TCGA-D9-A3Z3-06 2 185800759 185800759 C T ZNF804A Silent p.I212I 0.24 TCGA-D9-A3Z3-06 2 191899303 191899303 C T STAT4 Missense_Mutation p.G531S 0.24 tolerated(0.43) possibly_damaging(0.554) TCGA-D9-A3Z3-06 2 207173455 207173455 G A ZDBF2 Silent p.K1401K 0.31 TCGA-D9-A3Z3-06 2 211300994 211300994 G A LANCL1 Silent p.F332F 0.27 TCGA-D9-A3Z3-06 2 219256178 219256178 C T SLC11A1 Missense_Mutation p.S375F 0.38 deleterious(0) probably_damaging(0.969) TCGA-D9-A3Z3-06 2 69053444 69053444 G A ARHGAP25 3'UTR 0.27 TCGA-D9-A3Z3-06 2 85922457 85922457 C T GNLY Missense_Mutation p.R23C 0.35 deleterious(0.01) benign(0.446) TCGA-D9-A3Z3-06 3 113377521 113377521 C T KIAA2018 Missense_Mutation p.G1003D 0.27 possibly_damaging(0.821) TCGA-D9-A3Z3-06 3 113377522 113377522 C T KIAA2018 Missense_Mutation p.G1003S 0.27 possibly_damaging(0.821) TCGA-D9-A3Z3-06 3 118865231 118865231 C T C3orf30 Silent p.S65S 0.29 TCGA-D9-A3Z3-06 3 121341969 121341969 C T FBXO40 Missense_Mutation p.H565Y 0.30 tolerated(0.08) benign(0.162) TCGA-D9-A3Z3-06 3 122334616 122334616 C T PARP15 Intron 0.28 TCGA-D9-A3Z3-06 3 122634447 122634447 C T SEMA5B Missense_Mutation p.G664R 0.12 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 3 13381792 13381792 G A NUP210 Missense_Mutation p.P1079S 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-D9-A3Z3-06 3 167750415 167750415 G A GOLIM4 Missense_Mutation p.L357F 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 3 180319940 180319940 C T TTC14 5'UTR 0.27 TCGA-D9-A3Z3-06 3 186386822 186386822 C T HRG Silent p.S94S 0.30 TCGA-D9-A3Z3-06 3 189587149 189587149 C T TP63 Missense_Mutation p.S389F 0.25 deleterious(0.01) possibly_damaging(0.564) TCGA-D9-A3Z3-06 3 33868069 33868069 C T PDCD6IP Silent p.P238P 0.21 TCGA-D9-A3Z3-06 3 49759760 49759760 G A GMPPB Silent p.D224D 0.18 TCGA-D9-A3Z3-06 3 49759761 49759761 T C GMPPB Missense_Mutation p.D224G 0.18 deleterious(0.03) benign(0.422) TCGA-D9-A3Z3-06 3 71247407 71247407 C T FOXP1 Silent p.P42P 0.14 TCGA-D9-A3Z3-06 4 186545428 186545428 G A SORBS2 Silent p.S481S 0.24 TCGA-D9-A3Z3-06 4 23815598 23815598 G A PPARGC1A Missense_Mutation p.S503L 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.776) TCGA-D9-A3Z3-06 4 42077755 42077755 T G SLC30A9 Silent p.V500V 0.29 TCGA-D9-A3Z3-06 4 42122105 42122105 G A BEND4 Silent p.R451R 0.38 TCGA-D9-A3Z3-06 4 5812829 5812829 C T EVC 3'UTR 0.40 TCGA-D9-A3Z3-06 4 68810234 68810234 C T TMPRSS11A Silent p.V85V 0.31 TCGA-D9-A3Z3-06 4 79291087 79291087 G A FRAS1 Missense_Mutation p.E940K 0.39 possibly_damaging(0.562) TCGA-D9-A3Z3-06 4 8613798 8613798 G A CPZ Missense_Mutation p.M424I 0.29 tolerated(0.51) benign(0.017) TCGA-D9-A3Z3-06 5 135692572 135692572 G A TRPC7 Silent p.I168I 0.25 TCGA-D9-A3Z3-06 5 140594154 140594154 T A PCDHB13 Missense_Mutation p.F153L 0.33 deleterious_low_confidence(0.03) benign(0.193) TCGA-D9-A3Z3-06 5 140724441 140724441 C T PCDHGA3 Silent p.L281L 0.23 TCGA-D9-A3Z3-06 5 174869119 174869119 G A DRD1 Silent p.P328P 0.38 TCGA-D9-A3Z3-06 5 175572158 175572158 C T RP11-844P9.2 RNA 0.16 TCGA-D9-A3Z3-06 5 176965996 176965996 G A FAM193B Silent p.L121L 0.30 TCGA-D9-A3Z3-06 5 36680583 36680583 G A SLC1A3 Missense_Mutation p.G394E 0.31 deleterious(0) probably_damaging(0.998) TCGA-D9-A3Z3-06 5 66478990 66478990 G A CD180 Missense_Mutation p.R561C 0.27 deleterious(0.04) benign(0.134) TCGA-D9-A3Z3-06 5 77458735 77458735 G A AP3B1 Missense_Mutation p.T424I 0.10 deleterious(0) probably_damaging(0.985) TCGA-D9-A3Z3-06 5 78422045 78422045 C T BHMT Missense_Mutation p.P268S 0.29 deleterious(0.04) probably_damaging(0.975) TCGA-D9-A3Z3-06 6 116911443 116911443 C T RWDD1 Silent p.F141F 0.35 TCGA-D9-A3Z3-06 6 129722465 129722465 G A LAMA2 Missense_Mutation p.E1848K 0.42 tolerated(0.42) benign(0.155) TCGA-D9-A3Z3-06 6 130761678 130761678 G A TMEM200A Silent p.K37K 0.36 TCGA-D9-A3Z3-06 6 133045892 133045892 A T VNN3 3'UTR 0.33 TCGA-D9-A3Z3-06 6 150240199 150240199 G A RAET1G Missense_Mutation p.T204I 0.43 tolerated(0.16) probably_damaging(0.998) TCGA-D9-A3Z3-06 6 28268987 28268987 C T PGBD1 Silent p.V452V 0.35 TCGA-D9-A3Z3-06 6 31930804 31930804 C T SKIV2L Missense_Mutation p.H447Y 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 6 31939967 31939967 G A STK19 Missense_Mutation p.G65E 0.37 tolerated_low_confidence(0.14) possibly_damaging(0.694) TCGA-D9-A3Z3-06 6 43181615 43181615 G A CUL9 Missense_Mutation p.E1885K 0.27 deleterious(0.02) benign(0.215) TCGA-D9-A3Z3-06 6 46216612 46216612 G A RCAN2 Missense_Mutation p.R83W 0.30 deleterious(0) possibly_damaging(0.693) TCGA-D9-A3Z3-06 6 46825899 46825899 G A GPR116 Silent p.F1247F 0.27 TCGA-D9-A3Z3-06 6 47200581 47200581 C T TNFRSF21 Missense_Mutation p.E630K 0.32 deleterious(0) probably_damaging(0.932) TCGA-D9-A3Z3-06 6 52052534 52052534 G A IL17A Missense_Mutation p.R54Q 0.22 tolerated(0.97) benign(0.013) TCGA-D9-A3Z3-06 7 127484404 127484404 C T SND1 Missense_Mutation p.P424S 0.36 deleterious(0.02) benign(0.156) TCGA-D9-A3Z3-06 7 129856273 129856273 C T SSMEM1 Missense_Mutation p.S233F 0.39 tolerated(0.17) possibly_damaging(0.683) TCGA-D9-A3Z3-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-D9-A3Z3-06 7 142000775 142000775 C T TRBV2 5'UTR 0.17 TCGA-D9-A3Z3-06 7 43519247 43519247 C T HECW1 Silent p.F1046F 0.22 TCGA-D9-A3Z3-06 7 47897388 47897388 A T PKD1L1 Missense_Mutation p.F1469I 0.21 tolerated(0.09) benign(0.029) TCGA-D9-A3Z3-06 7 86394597 86394597 C T GRM3 Missense_Mutation p.P46S 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 7 86468237 86468237 C T GRM3 Silent p.F469F 0.20 TCGA-D9-A3Z3-06 7 95217061 95217061 C T PDK4 Missense_Mutation p.G283E 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A3Z3-06 8 101105711 101105711 G A RGS22 Silent p.F27F 0.27 TCGA-D9-A3Z3-06 8 110100287 110100287 G A TRHR Silent p.K182K 0.25 TCGA-D9-A3Z3-06 8 121706063 121706063 G A SNTB1 Silent p.S219S 0.27 TCGA-D9-A3Z3-06 8 30695081 30695081 G A TEX15 Missense_Mutation p.P2524S 0.24 tolerated(0.7) benign(0.001) TCGA-D9-A3Z3-06 8 82715355 82715355 G A SNX16 Missense_Mutation p.H264Y 0.27 tolerated(0.41) benign(0.002) TCGA-D9-A3Z3-06 9 114304990 114304990 C T ZNF483 Missense_Mutation p.S592L 0.52 deleterious(0) benign(0.307) TCGA-D9-A3Z3-06 9 131513739 131513739 G A ZER1 Missense_Mutation p.L331F 0.52 deleterious(0.01) possibly_damaging(0.889) TCGA-D9-A3Z3-06 9 36671008 36671008 G A MELK Missense_Mutation p.E507K 0.45 deleterious(0.01) possibly_damaging(0.721) TCGA-D9-A3Z3-06 9 406940 406940 C T DOCK8 Missense_Mutation p.S1134F 0.37 tolerated(0.48) probably_damaging(0.99) TCGA-D9-A3Z3-06 9 406941 406941 C T DOCK8 Silent p.S1134S 0.37 TCGA-D9-A3Z3-06 9 99266040 99266040 G A CDC14B Missense_Mutation p.R498C 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D9-A3Z3-06 X 105281099 105281099 G A SERPINA7 5'UTR 0.35 TCGA-D9-A3Z3-06 X 151092610 151092610 C T MAGEA4 Silent p.S158S 0.44 TCGA-D9-A3Z3-06 X 17819063 17819063 G A RAI2 Silent p.P356P 0.35 TCGA-D9-A3Z3-06 X 18643338 18643338 C T CDKL5 Missense_Mutation p.P823S 0.27 tolerated_low_confidence(0.21) possibly_damaging(0.641) TCGA-D9-A3Z3-06 X 34150050 34150050 C T FAM47A Missense_Mutation p.A116T 0.43 tolerated(0.18) benign(0.001) TCGA-D9-A3Z3-06 X 34150133 34150133 G A FAM47A Missense_Mutation p.A88V 0.40 tolerated(0.29) benign(0.04) TCGA-D9-A3Z4-01 10 105811271 105811271 G A COL17A1 Missense_Mutation p.S669F 0.30 unknown(0) TCGA-D9-A3Z4-01 10 115971716 115971716 C T TDRD1 Silent p.I584I 0.23 TCGA-D9-A3Z4-01 10 135012112 135012112 C T KNDC1 Silent p.S700S 0.70 TCGA-D9-A3Z4-01 10 28971193 28971193 A C BAMBI Missense_Mutation p.M216L 0.36 tolerated(0.1) benign(0.019) TCGA-D9-A3Z4-01 10 43089606 43089606 G A ZNF33B Silent p.F264F 0.35 TCGA-D9-A3Z4-01 10 6498675 6498675 C T PRKCQ Silent p.T536T 0.35 TCGA-D9-A3Z4-01 10 68687068 68687068 G C LRRTM3 Missense_Mutation p.V132L 0.30 tolerated(0.47) benign(0.134) TCGA-D9-A3Z4-01 10 7608153 7608153 G A ITIH5 Silent p.S789S 0.20 TCGA-D9-A3Z4-01 10 91198622 91198622 G A SLC16A12 Missense_Mutation p.S256L 0.20 tolerated(0.19) benign(0.005) TCGA-D9-A3Z4-01 11 120852895 120852895 G A GRIK4 Missense_Mutation p.E826K 0.63 deleterious(0) possibly_damaging(0.591) TCGA-D9-A3Z4-01 11 31812346 31812346 A G PAX6 Silent p.N379N 0.71 TCGA-D9-A3Z4-01 11 36597001 36597001 G A RAG1 Missense_Mutation p.R716Q 0.64 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-D9-A3Z4-01 11 55659176 55659176 C T TRIM51 3'UTR 0.71 TCGA-D9-A3Z4-01 11 59807901 59807901 T C OOSP2 5'UTR 0.30 TCGA-D9-A3Z4-01 11 68560821 68560821 C T CPT1A Missense_Mutation p.R310Q 0.33 deleterious(0) probably_damaging(0.914) TCGA-D9-A3Z4-01 11 74013568 74013568 C T P4HA3 Missense_Mutation p.R138K 0.49 tolerated(0.88) benign(0.01) TCGA-D9-A3Z4-01 11 93822132 93822132 A C HEPHL1 Missense_Mutation p.E764D 0.56 tolerated(0.32) benign(0.006) TCGA-D9-A3Z4-01 12 101703598 101703598 C T UTP20 Missense_Mutation p.P738S 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-D9-A3Z4-01 12 107113766 107113766 G A RFX4 Silent p.E398E 0.36 TCGA-D9-A3Z4-01 12 109519148 109519148 C T USP30 Nonsense_Mutation p.R244* 0.33 TCGA-D9-A3Z4-01 12 129558863 129558863 C T TMEM132D Missense_Mutation p.E953K 0.32 deleterious(0.05) benign(0.171) TCGA-D9-A3Z4-01 12 15102800 15102800 G A ARHGDIB Silent p.V67V 0.28 TCGA-D9-A3Z4-01 12 43826584 43826584 T G ADAMTS20 Silent p.S917S 0.33 TCGA-D9-A3Z4-01 12 48134323 48134323 A C RAPGEF3 Intron 0.55 TCGA-D9-A3Z4-01 12 52911460 52911460 C T KRT5 Missense_Mutation p.D336N 0.27 tolerated(0.09) benign(0.163) TCGA-D9-A3Z4-01 12 54893186 54893186 C T NCKAP1L Silent p.S50S 0.33 TCGA-D9-A3Z4-01 12 7459141 7459141 C T ACSM4 Missense_Mutation p.P72S 0.31 tolerated(0.17) benign(0.017) TCGA-D9-A3Z4-01 12 81101463 81101463 C T MYF6 5'UTR 0.41 TCGA-D9-A3Z4-01 13 106142351 106142351 G A DAOA Missense_Mutation p.R128Q 0.32 deleterious_low_confidence(0) benign(0.417) TCGA-D9-A3Z4-01 13 46619172 46619172 C T ZC3H13 Missense_Mutation p.G49S 0.59 unknown(0) TCGA-D9-A3Z4-01 14 24885517 24885517 G A NYNRIN Missense_Mutation p.G1521D 0.67 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A3Z4-01 16 11870760 11870760 G A ZC3H7A Silent p.F104F 0.31 TCGA-D9-A3Z4-01 16 14234489 14234489 C T MKL2 Missense_Mutation p.T9I 0.23 tolerated(0.29) benign(0.156) TCGA-D9-A3Z4-01 16 1551737 1551737 C T TELO2 Nonsense_Mutation p.Q479* 0.39 TCGA-D9-A3Z4-01 16 15826559 15826559 C T MYH11 Silent p.K1178K 0.38 TCGA-D9-A3Z4-01 16 2018561 2018561 G A RNF151 Missense_Mutation p.G125R 0.19 tolerated(0.78) benign(0.012) TCGA-D9-A3Z4-01 16 2025061 2025084 CTCACTGGCCTTCAGCGCCGACGG - TBL3 In_Frame_Del p.S200_G207del 0.46 TCGA-D9-A3Z4-01 16 28509498 28509498 C T APOBR Missense_Mutation p.R1018C 0.38 deleterious(0) unknown(0) TCGA-D9-A3Z4-01 16 2882082 2882082 G A ZG16B Nonsense_Mutation p.W183* 0.41 TCGA-D9-A3Z4-01 16 29912928 29912928 C T ASPHD1 Silent p.L212L 0.37 TCGA-D9-A3Z4-01 16 31072258 31072258 G A ZNF668 3'UTR 0.41 TCGA-D9-A3Z4-01 16 4851318 4851318 C T ROGDI Missense_Mutation p.D69N 0.44 deleterious(0) probably_damaging(0.997) TCGA-D9-A3Z4-01 16 67327453 67327453 C T KCTD19 Missense_Mutation p.E738K 0.51 tolerated_low_confidence(0.13) benign(0.101) TCGA-D9-A3Z4-01 16 81730263 81730263 C T CMIP Silent p.F543F 0.53 TCGA-D9-A3Z4-01 17 11687704 11687704 C T DNAH9 Missense_Mutation p.L2637F 0.34 benign(0.009) TCGA-D9-A3Z4-01 17 12661435 12661435 C A MYOCD Missense_Mutation p.P746T 0.33 tolerated(0.1) benign(0.227) TCGA-D9-A3Z4-01 17 19445774 19445774 G A SLC47A1 Silent p.K68K 0.32 TCGA-D9-A3Z4-01 17 38243024 38243024 C T THRA Missense_Mutation p.A214V 0.36 tolerated(0.27) probably_damaging(0.976) TCGA-D9-A3Z4-01 17 39023373 39023373 G A KRT12 Silent p.S22S 0.29 TCGA-D9-A3Z4-01 17 41345575 41345575 C T NBR1 Missense_Mutation p.P482S 0.33 tolerated(0.4) benign(0.003) TCGA-D9-A3Z4-01 17 44073845 44073845 C T MAPT Missense_Mutation p.P548S 0.41 deleterious(0) probably_damaging(0.943) TCGA-D9-A3Z4-01 17 6978703 6978703 C T CLEC10A Missense_Mutation p.G253E 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-D9-A3Z4-01 17 6978704 6978704 C T CLEC10A Missense_Mutation p.G253R 0.33 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z4-01 17 79663917 79663917 A T HGS Missense_Mutation p.S591C 0.31 deleterious(0.03) benign(0.111) TCGA-D9-A3Z4-01 18 13056266 13056268 CTC - CEP192 In_Frame_Del p.P1227del 0.41 TCGA-D9-A3Z4-01 18 31325494 31325494 C G ASXL3 Silent p.V1894V 0.45 TCGA-D9-A3Z4-01 18 52609974 52609974 C T CCDC68 Missense_Mutation p.E17K 0.38 deleterious(0.05) benign(0.125) TCGA-D9-A3Z4-01 18 61449612 61449612 C T SERPINB7 Silent p.A2A 0.22 TCGA-D9-A3Z4-01 19 10225498 10225498 C T P2RY11 3'UTR 0.42 TCGA-D9-A3Z4-01 19 19261526 19261526 G A MEF2B Nonsense_Mutation p.Q7* 0.45 TCGA-D9-A3Z4-01 19 19749226 19749226 C T GMIP Silent p.K201K 0.23 TCGA-D9-A3Z4-01 19 38987102 38987102 C T RYR1 Silent p.F2239F 0.49 TCGA-D9-A3Z4-01 19 42301871 42301871 C T CEACAM3 Missense_Mutation p.H139Y 0.38 tolerated(0.18) benign(0.005) TCGA-D9-A3Z4-01 19 45150785 45150785 C T PVR Silent p.L124L 0.50 TCGA-D9-A3Z4-01 19 4523719 4523719 G A PLIN5 Missense_Mutation p.P405S 0.44 deleterious(0.03) benign(0.099) TCGA-D9-A3Z4-01 19 49303477 49303477 C T BCAT2 Silent p.R126R 0.34 TCGA-D9-A3Z4-01 19 49303478 49303478 C T BCAT2 Missense_Mutation p.R126Q 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 19 52130921 52130921 G A SIGLEC5 Missense_Mutation p.P359L 0.36 tolerated(0.1) probably_damaging(0.94) TCGA-D9-A3Z4-01 19 53269883 53269883 G A ZNF600 Missense_Mutation p.H376Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-D9-A3Z4-01 19 53645802 53645802 A G ZNF347 Silent p.S94S 0.30 TCGA-D9-A3Z4-01 19 54545045 54545045 C T VSTM1 Silent p.R193R 0.32 TCGA-D9-A3Z4-01 19 56544122 56544122 C T NLRP5 Missense_Mutation p.P808S 0.22 deleterious(0.05) benign(0.253) TCGA-D9-A3Z4-01 19 57327581 57327581 A C PEG3 Missense_Mutation p.S743R 0.34 tolerated(0.42) benign(0.131) TCGA-D9-A3Z4-01 19 57641439 57641439 C T USP29 Missense_Mutation p.P466S 0.37 tolerated(0.09) benign(0.287) TCGA-D9-A3Z4-01 19 6664984 6664984 G A TNFSF14 Nonsense_Mutation p.R226* 0.38 TCGA-D9-A3Z4-01 19 692001 692001 C T PRSS57 Missense_Mutation p.D80N 0.20 tolerated(0.46) benign(0.044) TCGA-D9-A3Z4-01 19 7911404 7911404 C T EVI5L 5'Flank 0.26 TCGA-D9-A3Z4-01 1 10364025 10364025 C T KIF1B Intron 0.77 TCGA-D9-A3Z4-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.79 tolerated(0.06) benign(0.006) TCGA-D9-A3Z4-01 1 149398948 149398948 C T HIST2H3PS2 3'Flank 0.35 TCGA-D9-A3Z4-01 1 152082677 152082677 C T TCHH Missense_Mutation p.E1006K 0.37 unknown(0) TCGA-D9-A3Z4-01 1 153788863 153788863 G A GATAD2B Missense_Mutation p.P368S 0.40 deleterious(0.03) probably_damaging(1) TCGA-D9-A3Z4-01 1 155020646 155020646 G A DCST1 Silent p.P623P 0.47 TCGA-D9-A3Z4-01 1 156518453 156518453 G A IQGAP3 Missense_Mutation p.A638V 0.48 tolerated(0.13) benign(0.025) TCGA-D9-A3Z4-01 1 157516924 157516924 C T FCRL5 Missense_Mutation p.R39K 0.40 tolerated(0.28) benign(0.006) TCGA-D9-A3Z4-01 1 158817535 158817535 G A MNDA Silent p.K335K 0.36 TCGA-D9-A3Z4-01 1 160145985 160145985 C T ATP1A4 Silent p.P805P 0.46 TCGA-D9-A3Z4-01 1 162773287 162773287 C T HSD17B7 Missense_Mutation p.P237S 0.47 tolerated(0.67) benign(0.009) TCGA-D9-A3Z4-01 1 16360146 16360146 C T CLCNKA Missense_Mutation p.P686L 0.34 tolerated_low_confidence(0.07) benign(0.003) TCGA-D9-A3Z4-01 1 176525389 176525389 C T PAPPA2 5'UTR 0.55 TCGA-D9-A3Z4-01 1 179523711 179523711 G A AXDND1 3'UTR 0.45 TCGA-D9-A3Z4-01 1 185153946 185153946 C T SWT1 Silent p.L438L 0.39 TCGA-D9-A3Z4-01 1 197890739 197890739 G A LHX9 Missense_Mutation p.R228Q 0.30 deleterious(0.02) probably_damaging(0.928) TCGA-D9-A3Z4-01 1 212798993 212798993 C T FAM71A Silent p.S258S 0.54 TCGA-D9-A3Z4-01 1 214817949 214817949 C T CENPF Missense_Mutation p.S1679L 0.27 benign(0.004) TCGA-D9-A3Z4-01 1 226109560 226109560 A T PYCR2 Missense_Mutation p.Y180N 0.40 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z4-01 1 32042809 32042809 G T TINAGL1 Silent p.L20L 0.67 TCGA-D9-A3Z4-01 1 45292330 45292330 C T PTCH2 Missense_Mutation p.E936K 0.80 tolerated(0.8) benign(0.086) TCGA-D9-A3Z4-01 1 7151399 7151399 C T CAMTA1 Silent p.H90H 0.36 TCGA-D9-A3Z4-01 1 75039086 75039086 C T C1orf173 Missense_Mutation p.E770K 0.74 deleterious(0.02) benign(0.184) TCGA-D9-A3Z4-01 1 89579780 89579780 C T GBP2 Silent p.R356R 0.84 TCGA-D9-A3Z4-01 1 89579781 89579781 C T GBP2 Missense_Mutation p.R356K 0.84 tolerated(0.29) benign(0.02) TCGA-D9-A3Z4-01 20 19566150 19566150 C T SLC24A3 Silent p.L192L 0.40 TCGA-D9-A3Z4-01 20 23420915 23420915 G A CSTL1 Missense_Mutation p.G4E 0.40 tolerated_low_confidence(0.18) benign(0.003) TCGA-D9-A3Z4-01 20 33999785 33999785 C T UQCC1 5'UTR 0.31 TCGA-D9-A3Z4-01 20 47246052 47246052 G A PREX1 Silent p.I1567I 0.42 TCGA-D9-A3Z4-01 20 57036482 57036482 C T APCDD1L Silent p.E290E 0.58 TCGA-D9-A3Z4-01 20 6091134 6091134 G A FERMT1 Missense_Mutation p.T186I 0.45 tolerated(0.15) possibly_damaging(0.6) TCGA-D9-A3Z4-01 21 27354788 27354788 G A APP Missense_Mutation p.P365S 0.31 deleterious(0.03) probably_damaging(1) TCGA-D9-A3Z4-01 21 41032753 41032753 G A B3GALT5 Silent p.K89K 0.46 TCGA-D9-A3Z4-01 21 42629153 42629153 C T BACE2 Silent p.S401S 0.76 TCGA-D9-A3Z4-01 21 45860723 45860723 G A TRPM2 Missense_Mutation p.E1441K 0.78 deleterious(0) possibly_damaging(0.771) TCGA-D9-A3Z4-01 22 18844885 18844885 G A BCRP7 RNA 0.10 TCGA-D9-A3Z4-01 22 22843138 22843138 C T ZNF280B Missense_Mutation p.E196K 0.42 tolerated(0.13) benign(0.014) TCGA-D9-A3Z4-01 22 23090157 23090157 C T IGLV3-16 Silent p.S32S 0.36 TCGA-D9-A3Z4-01 22 28193562 28193562 G A MN1 Silent p.S990S 0.20 TCGA-D9-A3Z4-01 22 29837951 29837951 C T RFPL1 Missense_Mutation p.S265F 0.07 deleterious(0.05) possibly_damaging(0.74) TCGA-D9-A3Z4-01 22 32586919 32586919 G A RFPL2 Missense_Mutation p.S326F 0.34 deleterious(0.04) probably_damaging(0.985) TCGA-D9-A3Z4-01 22 36913424 36913424 G A EIF3D Missense_Mutation p.S305F 0.48 deleterious(0) benign(0.41) TCGA-D9-A3Z4-01 22 43570232 43570232 G A TTLL12 Silent p.F404F 0.34 TCGA-D9-A3Z4-01 22 43617226 43617226 G A SCUBE1 Missense_Mutation p.P501L 0.27 tolerated(0.12) benign(0.184) TCGA-D9-A3Z4-01 22 46654698 46654698 G A PKDREJ Missense_Mutation p.L1508F 0.37 tolerated(0.72) benign(0.011) TCGA-D9-A3Z4-01 2 113737702 113737702 G A IL36G Missense_Mutation p.E93K 0.22 deleterious(0.03) benign(0.05) TCGA-D9-A3Z4-01 2 179454279 179454279 C T TTN Missense_Mutation p.E20725K 0.42 TCGA-D9-A3Z4-01 2 179485469 179485469 T A TTN Nonsense_Mutation p.K15290* 0.41 TCGA-D9-A3Z4-01 2 179599632 179599632 C T TTN Missense_Mutation p.G5007S 0.24 TCGA-D9-A3Z4-01 2 179610476 179610476 C T TTN Intron 0.33 TCGA-D9-A3Z4-01 2 179642155 179642155 G A TTN Missense_Mutation p.T1546I 0.30 TCGA-D9-A3Z4-01 2 179701691 179701691 T G CCDC141 Missense_Mutation p.T1419P 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 2 210640756 210640756 C T UNC80 Silent p.N95N 0.43 TCGA-D9-A3Z4-01 2 225346638 225346638 G A CUL3 Missense_Mutation p.S667F 0.38 deleterious(0) probably_damaging(0.992) TCGA-D9-A3Z4-01 2 29152564 29152564 T C WDR43 Silent p.F475F 0.27 TCGA-D9-A3Z4-01 2 31010032 31010032 C T CAPN13 Missense_Mutation p.E54K 0.27 tolerated(0.77) benign(0.044) TCGA-D9-A3Z4-01 2 55462591 55462591 C A RPS27A Missense_Mutation p.L117I 0.38 deleterious(0.04) benign(0.133) TCGA-D9-A3Z4-01 2 56097970 56097970 G A EFEMP1 Missense_Mutation p.S402F 0.36 deleterious(0) probably_damaging(0.959) TCGA-D9-A3Z4-01 2 61192596 61192596 G A PUS10 Silent p.V213V 0.42 TCGA-D9-A3Z4-01 2 99767217 99767217 G A C2ORF15 Missense_Mutation p.G100R 0.28 tolerated_low_confidence(0.08) benign(0.006) TCGA-D9-A3Z4-01 3 121354627 121354627 C T HCLS1 Missense_Mutation p.E216K 0.38 tolerated(0.13) possibly_damaging(0.621) TCGA-D9-A3Z4-01 3 121648188 121648188 A G SLC15A2 Missense_Mutation p.T516A 0.37 tolerated(1) benign(0) TCGA-D9-A3Z4-01 3 132361569 132361569 A C ACAD11 Missense_Mutation p.S109R 0.42 tolerated(0.2) benign(0.008) TCGA-D9-A3Z4-01 3 142185365 142185365 C G ATR Missense_Mutation p.S2233T 0.39 deleterious(0.05) benign(0.016) TCGA-D9-A3Z4-01 3 178928317 178928317 C T PIK3CA Silent p.S501S 0.37 TCGA-D9-A3Z4-01 3 184069861 184069861 G A CLCN2 Silent p.F785F 0.39 TCGA-D9-A3Z4-01 3 38591746 38591746 T G SCN5A 3'UTR 0.46 TCGA-D9-A3Z4-01 3 49699266 49699266 C T BSN Nonsense_Mutation p.R3330* 0.36 TCGA-D9-A3Z4-01 4 121958083 121958083 C T NDNF Missense_Mutation p.G348E 0.35 deleterious(0) possibly_damaging(0.828) TCGA-D9-A3Z4-01 4 123176364 123176364 T A KIAA1109 Missense_Mutation p.S2102T 0.34 probably_damaging(0.991) TCGA-D9-A3Z4-01 4 139981786 139981786 C T ELF2 Silent p.Q271Q 0.42 TCGA-D9-A3Z4-01 4 146475004 146475004 C T SMAD1 Nonsense_Mutation p.Q356* 0.34 TCGA-D9-A3Z4-01 4 155505870 155505870 C A FGA Missense_Mutation p.L669F 0.38 deleterious(0) probably_damaging(0.962) TCGA-D9-A3Z4-01 4 166996110 166996110 C T TLL1 Missense_Mutation p.R757C 0.38 deleterious(0) probably_damaging(0.931) TCGA-D9-A3Z4-01 4 169327845 169327845 C T DDX60L Missense_Mutation p.G998R 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 4 22820516 22820516 C T GBA3 Silent p.I460I 0.38 TCGA-D9-A3Z4-01 4 25005391 25005391 G A LGI2 Silent p.I440I 0.42 TCGA-D9-A3Z4-01 4 44700579 44700581 CGA GG GUF1 Frame_Shift_Del p.R631Gfs*3 0.25 TCGA-D9-A3Z4-01 4 47938616 47938616 C T CNGA1 Missense_Mutation p.G701E 0.32 tolerated(0.27) possibly_damaging(0.662) TCGA-D9-A3Z4-01 4 48887541 48887541 C T OCIAD2 Missense_Mutation p.G142E 0.38 tolerated(0.15) benign(0.012) TCGA-D9-A3Z4-01 4 52862127 52862127 C G LRRC66 Missense_Mutation p.R354T 0.42 tolerated(0.2) benign(0.052) TCGA-D9-A3Z4-01 4 76924805 76924805 C T CXCL9 Silent p.K108K 0.38 TCGA-D9-A3Z4-01 5 10973626 10973626 G A CTNND2 Missense_Mutation p.P1206L 0.30 deleterious(0) possibly_damaging(0.889) TCGA-D9-A3Z4-01 5 10973627 10973627 G A CTNND2 Missense_Mutation p.P1206S 0.30 tolerated(0.15) possibly_damaging(0.714) TCGA-D9-A3Z4-01 5 13859564 13859564 G A DNAH5 Silent p.P1649P 0.38 TCGA-D9-A3Z4-01 5 140724284 140724284 C T PCDHGA3 Silent p.I228I 0.69 TCGA-D9-A3Z4-01 5 19473252 19473252 C T CDH18 3'UTR 0.43 TCGA-D9-A3Z4-01 5 89971991 89971991 C T GPR98 Missense_Mutation p.S1803F 0.64 possibly_damaging(0.683) TCGA-D9-A3Z4-01 6 117252517 117252517 C T RFX6 Missense_Mutation p.P879S 0.18 tolerated_low_confidence(0.48) benign(0.001) TCGA-D9-A3Z4-01 6 131940974 131940974 G A MED23 Silent p.S220S 0.23 TCGA-D9-A3Z4-01 6 138584591 138584591 C T KIAA1244 Silent p.A657A 0.43 TCGA-D9-A3Z4-01 6 144507793 144507793 A G STX11 Missense_Mutation p.D10G 0.31 tolerated(0.14) benign(0) TCGA-D9-A3Z4-01 6 159646711 159646711 T A FNDC1 Missense_Mutation p.D343E 0.40 tolerated(0.29) unknown(0) TCGA-D9-A3Z4-01 6 159660580 159660580 C T FNDC1 Silent p.D1404D 0.50 TCGA-D9-A3Z4-01 6 24448150 24448150 C T GPLD1 Missense_Mutation p.G545R 0.37 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 6 31779455 31779455 C T HSPA1L Missense_Mutation p.E99K 0.34 tolerated_low_confidence(0.31) benign(0.075) TCGA-D9-A3Z4-01 6 35911676 35911676 C T SLC26A8 3'UTR 0.32 TCGA-D9-A3Z4-01 6 39159118 39159118 T C KCNK5 Missense_Mutation p.N350D 0.42 tolerated(0.41) benign(0.034) TCGA-D9-A3Z4-01 6 4995379 4995379 A C RPP40 Missense_Mutation p.V342G 0.41 deleterious(0) probably_damaging(0.986) TCGA-D9-A3Z4-01 6 55933860 55933860 C T COL21A1 Missense_Mutation p.G692E 0.29 deleterious(0) probably_damaging(0.979) TCGA-D9-A3Z4-01 6 55933861 55933861 C A COL21A1 Missense_Mutation p.G692W 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 6 70082311 70082311 G A BAI3 Missense_Mutation p.R1418Q 0.52 deleterious(0) probably_damaging(0.978) TCGA-D9-A3Z4-01 6 72975138 72975138 G A RIMS1 Silent p.Q1080Q 0.33 TCGA-D9-A3Z4-01 6 80751983 80751983 T G TTK 3'UTR 0.38 TCGA-D9-A3Z4-01 7 100855889 100855889 C T PLOD3 Silent p.P309P 0.35 TCGA-D9-A3Z4-01 7 113518106 113518106 A G PPP1R3A Missense_Mutation p.I1014T 0.43 tolerated(0.08) benign(0.081) TCGA-D9-A3Z4-01 7 142640576 142640576 G A KEL Missense_Mutation p.P567L 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A3Z4-01 7 18684372 18684372 C T HDAC9 Missense_Mutation p.P331S 0.42 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z4-01 7 43590091 43590091 G A HECW1 Silent p.T1432T 0.56 TCGA-D9-A3Z4-01 7 86415762 86415762 C T GRM3 Silent p.S218S 0.37 TCGA-D9-A3Z4-01 7 94054434 94054434 A G COL1A2 Silent p.E893E 0.27 TCGA-D9-A3Z4-01 8 107763103 107763103 G A OXR1 Silent p.G853G 0.18 TCGA-D9-A3Z4-01 8 26365392 26365392 G A PNMA2 Missense_Mutation p.R294C 0.64 deleterious(0.04) benign(0.011) TCGA-D9-A3Z4-01 8 53071640 53071640 G A ST18 Missense_Mutation p.P542S 0.64 tolerated(0.76) benign(0.07) TCGA-D9-A3Z4-01 8 67356917 67356917 C T ADHFE1 Missense_Mutation p.S96F 0.73 deleterious(0) possibly_damaging(0.882) TCGA-D9-A3Z4-01 8 75275190 75275190 A G GDAP1 Missense_Mutation p.H199R 0.11 tolerated(0.22) probably_damaging(0.951) TCGA-D9-A3Z4-01 8 85785593 85785593 C T RALYL Missense_Mutation p.R229C 0.16 deleterious(0) probably_damaging(0.975) TCGA-D9-A3Z4-01 9 121929935 121929935 A T BRINP1 Missense_Mutation p.H571Q 0.39 deleterious(0) possibly_damaging(0.88) TCGA-D9-A3Z4-01 9 131151610 131151610 C T URM1 Missense_Mutation p.P87S 0.35 deleterious_low_confidence(0.05) benign(0.001) TCGA-D9-A3Z4-01 9 27228284 27228284 G T TEK Missense_Mutation p.R1094I 0.72 deleterious(0) probably_damaging(0.999) TCGA-D9-A3Z4-01 9 79985430 79985430 C T VPS13A Missense_Mutation p.A2948V 0.34 deleterious(0.03) probably_damaging(0.938) TCGA-D9-A3Z4-01 9 84531720 84531720 C T SPATA31D5P RNA 0.42 TCGA-D9-A3Z4-01 9 96857654 96857654 C T PTPDC1 Silent p.I222I 0.37 TCGA-D9-A3Z4-01 X 105153090 105153090 G T NRK Missense_Mutation p.R487M 0.47 deleterious(0.02) benign(0.326) TCGA-D9-A3Z4-01 X 114238634 114238634 G A IL13RA2 3'UTR 0.59 TCGA-D9-A3Z4-01 X 118123396 118123396 C T LONRF3 Missense_Mutation p.S362F 0.70 tolerated(0.3) benign(0.049) TCGA-D9-A3Z4-01 X 151283718 151283718 G A RP11-1007I13.4 RNA 0.77 TCGA-D9-A3Z4-01 X 151904512 151904512 A G CSAG1 Missense_Mutation p.T4A 0.09 tolerated_low_confidence(0.48) benign(0) TCGA-D9-A3Z4-01 X 34149499 34149499 C T FAM47A Silent p.G299G 0.60 TCGA-D9-A3Z4-01 X 41206171 41206171 C T DDX3X Missense_Mutation p.L559F 0.85 deleterious(0) probably_damaging(0.968) TCGA-D9-A3Z4-01 X 65238757 65238757 T C VSIG4 3'Flank 0.89 TCGA-D9-A3Z4-01 X 7171267 7171267 C T STS Silent p.F14F 0.76 TCGA-D9-A3Z4-01 X 76845318 76845318 G A ATRX Missense_Mutation p.P2068L 0.77 benign(0.032) TCGA-D9-A4Z2-01 10 31137649 31137649 C A ZNF438 Missense_Mutation p.R562L 0.75 deleterious(0) probably_damaging(0.99) TCGA-D9-A4Z2-01 10 402407 402407 T C DIP2C Missense_Mutation p.T982A 0.45 tolerated(0.3) benign(0.024) TCGA-D9-A4Z2-01 10 49791036 49791036 G T ARHGAP22 Missense_Mutation p.L66I 0.73 deleterious(0) probably_damaging(0.932) TCGA-D9-A4Z2-01 11 117969706 117969706 A G TMPRSS4 Missense_Mutation p.K17R 0.30 tolerated(0.4) benign(0.035) TCGA-D9-A4Z2-01 11 49831415 49831415 T G RP11-707M1.1 RNA 0.18 TCGA-D9-A4Z2-01 11 70275168 70275168 A G CTTN Missense_Mutation p.T310A 0.06 tolerated(0.77) probably_damaging(0.986) TCGA-D9-A4Z2-01 12 89992489 89992489 C T ATP2B1 Intron 0.43 TCGA-D9-A4Z2-01 15 81282101 81282101 A C MESDC2 Missense_Mutation p.V11G 0.40 deleterious(0) benign(0.123) TCGA-D9-A4Z2-01 17 73234405 73234405 G A GGA3 Silent p.G709G 0.34 TCGA-D9-A4Z2-01 17 74732464 74732464 A G SRSF2 Missense_Mutation p.S149P 0.50 deleterious(0.01) unknown(0) TCGA-D9-A4Z2-01 19 4110574 4110574 G A MAP2K2 Missense_Mutation p.P128L 0.11 deleterious(0) possibly_damaging(0.908) TCGA-D9-A4Z2-01 1 152279828 152279828 T G FLG Missense_Mutation p.S2512R 0.03 probably_damaging(0.981) TCGA-D9-A4Z2-01 1 44804931 44804931 G A ERI3 Missense_Mutation p.S92L 0.08 tolerated_low_confidence(0.23) benign(0) TCGA-D9-A4Z2-01 1 4832476 4832476 G A AJAP1 Missense_Mutation p.E352K 0.46 deleterious(0.01) benign(0.274) TCGA-D9-A4Z2-01 20 4228499 4228499 G C ADRA1D Missense_Mutation p.P369R 0.43 deleterious(0) probably_damaging(0.983) TCGA-D9-A4Z2-01 21 41516542 41516542 G T DSCAM Missense_Mutation p.D1045E 0.09 tolerated(0.2) benign(0.001) TCGA-D9-A4Z2-01 22 19752610 19752610 G C TBX1 Missense_Mutation p.A272P 0.44 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z2-01 2 101192933 101192933 G A PDCL3 Missense_Mutation p.R232K 0.15 tolerated(0.43) benign(0.007) TCGA-D9-A4Z2-01 2 108489084 108489084 G T RGPD4 Missense_Mutation p.G1542C 0.23 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z2-01 2 220506472 220506472 A G SLC4A3 3'UTR 0.35 TCGA-D9-A4Z2-01 2 86712974 86712974 A C KDM3A Missense_Mutation p.N1102T 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-D9-A4Z2-01 3 58139274 58139274 C T FLNB Silent p.P2211P 0.35 TCGA-D9-A4Z2-01 4 54968017 54968017 C T GSX2 Silent p.Y281Y 0.33 TCGA-D9-A4Z2-01 6 73902341 73902341 A T KCNQ5 Missense_Mutation p.E607V 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A4Z2-01 7 127341216 127341216 G T SND1 Splice_Site p.X143_splice 0.31 TCGA-D9-A4Z2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.57 deleterious(0) probably_damaging(0.967) TCGA-D9-A4Z2-01 7 78130980 78130980 A C MAGI2 Silent p.T293T 0.06 TCGA-D9-A4Z2-01 7 814759 814759 C T HEATR2 Silent p.G733G 0.06 TCGA-D9-A4Z2-01 7 82586188 82586188 T A PCLO Missense_Mutation p.S1361C 0.51 unknown(0) TCGA-D9-A4Z2-01 7 98254234 98254234 G A NPTX2 Missense_Mutation p.G215D 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-D9-A4Z2-01 9 113233760 113233760 G A SVEP1 Missense_Mutation p.P961L 0.11 probably_damaging(0.988) TCGA-D9-A4Z3-01 10 102054364 102054364 G A PKD2L1 Silent p.I529I 0.37 TCGA-D9-A4Z3-01 10 105815695 105815695 G A COL17A1 Missense_Mutation p.P511L 0.39 unknown(0) TCGA-D9-A4Z3-01 10 106970971 106970971 G A SORCS3 Missense_Mutation p.D780N 0.43 deleterious(0.02) benign(0.339) TCGA-D9-A4Z3-01 10 112635741 112635741 C T PDCD4 5'UTR 0.30 TCGA-D9-A4Z3-01 10 114044355 114044355 G A TECTB Missense_Mutation p.G47R 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 10 124009158 124009158 G A TACC2 Silent p.L2920L 0.39 TCGA-D9-A4Z3-01 10 131666048 131666048 C T EBF3 Missense_Mutation p.E295K 0.44 deleterious(0.05) possibly_damaging(0.708) TCGA-D9-A4Z3-01 10 134161528 134161528 G A LRRC27 Silent p.P198P 0.45 TCGA-D9-A4Z3-01 10 134650321 134650321 C T TTC40 Missense_Mutation p.R2179K 0.43 tolerated(0.16) possibly_damaging(0.831) TCGA-D9-A4Z3-01 10 15256193 15256193 G A FAM171A1 Missense_Mutation p.P465L 0.36 tolerated(0.07) benign(0.094) TCGA-D9-A4Z3-01 10 18250624 18250624 G A SLC39A12 Missense_Mutation p.E126K 0.19 tolerated(0.28) benign(0.009) TCGA-D9-A4Z3-01 10 21101739 21101739 G A NEBL Missense_Mutation p.P826L 0.18 tolerated(0.13) benign(0.077) TCGA-D9-A4Z3-01 10 23482663 23482663 G A PTF1A Missense_Mutation p.G272D 0.36 deleterious(0) unknown(0) TCGA-D9-A4Z3-01 10 24498017 24498017 C T KIAA1217 5'Flank 0.62 TCGA-D9-A4Z3-01 10 25138708 25138708 T C PRTFDC1 3'UTR 0.38 TCGA-D9-A4Z3-01 10 28250509 28250509 C T ARMC4 Silent p.V458V 0.38 TCGA-D9-A4Z3-01 10 28345478 28345478 C T MPP7 Silent p.L494L 0.32 TCGA-D9-A4Z3-01 10 31809231 31809231 C T ZEB1 Missense_Mutation p.P324L 0.40 deleterious(0.02) possibly_damaging(0.459) TCGA-D9-A4Z3-01 10 37441035 37441035 T A ANKRD30A Missense_Mutation p.S509T 0.38 tolerated(0.27) possibly_damaging(0.483) TCGA-D9-A4Z3-01 10 38241235 38241235 G A ZNF25 Silent p.P397P 0.29 TCGA-D9-A4Z3-01 10 436729 436729 G A DIP2C Silent p.C445C 0.34 TCGA-D9-A4Z3-01 10 48371278 48371278 C T ZNF488 Missense_Mutation p.P249L 0.57 tolerated(0.08) benign(0.066) TCGA-D9-A4Z3-01 10 48371279 48371279 C T ZNF488 Silent p.P249P 0.57 TCGA-D9-A4Z3-01 10 50686468 50686468 G A ERCC6 Missense_Mutation p.P740S 0.25 deleterious(0) probably_damaging(0.973) TCGA-D9-A4Z3-01 10 50857580 50857580 G A CHAT Missense_Mutation p.R470Q 0.53 tolerated(0.05) benign(0.28) TCGA-D9-A4Z3-01 10 52103295 52103295 G A SGMS1 Missense_Mutation p.L194F 0.58 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 10 52103296 52103296 G A SGMS1 Silent p.I193I 0.58 TCGA-D9-A4Z3-01 10 60560736 60560736 C T BICC1 Missense_Mutation p.P649S 0.43 tolerated(1) benign(0.001) TCGA-D9-A4Z3-01 10 61831375 61831375 C T ANK3 Silent p.E3088E 0.09 TCGA-D9-A4Z3-01 10 71973281 71973281 C T PPA1 Missense_Mutation p.G150E 0.44 tolerated(0.07) probably_damaging(1) TCGA-D9-A4Z3-01 10 71973282 71973282 C T PPA1 Missense_Mutation p.G150R 0.43 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z3-01 10 73498378 73498378 G A CDH23 Missense_Mutation p.D1450N 0.40 deleterious(0.01) probably_damaging(0.943) TCGA-D9-A4Z3-01 10 75286499 75286499 G A USP54 Silent p.S700S 0.39 TCGA-D9-A4Z3-01 10 7697616 7697616 T G ITIH5 Missense_Mutation p.Q38P 0.25 deleterious(0) possibly_damaging(0.774) TCGA-D9-A4Z3-01 10 79588668 79588668 G A DLG5 Missense_Mutation p.S754F 0.29 deleterious(0) possibly_damaging(0.863) TCGA-D9-A4Z3-01 10 81701731 81701731 G A SFTPD Missense_Mutation p.P177S 0.33 deleterious(0.02) benign(0.348) TCGA-D9-A4Z3-01 10 82122260 82122260 G A DYDC2 Missense_Mutation p.V35M 0.48 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 10 84745411 84745411 G C NRG3 3'Flank 0.21 TCGA-D9-A4Z3-01 10 90770317 90770317 G C FAS Missense_Mutation p.K155N 0.42 deleterious(0) benign(0.139) TCGA-D9-A4Z3-01 10 97607294 97607294 C T ENTPD1 Missense_Mutation p.T314I 0.27 tolerated(0.15) benign(0.332) TCGA-D9-A4Z3-01 10 98741867 98741867 C T C10orf12 Silent p.A240A 0.21 TCGA-D9-A4Z3-01 11 101832821 101832821 C T KIAA1377 Missense_Mutation p.P352L 0.37 tolerated(0.31) benign(0.009) TCGA-D9-A4Z3-01 11 102248885 102248885 A G BIRC2 Missense_Mutation p.K610E 0.48 deleterious(0) possibly_damaging(0.859) TCGA-D9-A4Z3-01 11 102713427 102713427 C T MMP3 Nonsense_Mutation p.W109* 0.26 TCGA-D9-A4Z3-01 11 105483088 105483088 G A GRIA4 Silent p.S58S 0.24 TCGA-D9-A4Z3-01 11 10645339 10645339 G A MRVI1 Missense_Mutation p.A478V 0.31 tolerated(0.06) benign(0.233) TCGA-D9-A4Z3-01 11 107663440 107663440 C T SLC35F2 Silent p.P342P 0.21 TCGA-D9-A4Z3-01 11 10789453 10789453 C T CTR9 Missense_Mutation p.S596F 0.40 deleterious(0.05) possibly_damaging(0.496) TCGA-D9-A4Z3-01 11 113934732 113934732 G A ZBTB16 Missense_Mutation p.G237E 0.44 tolerated(0.82) benign(0.033) TCGA-D9-A4Z3-01 11 118106264 118106264 G A MPZL3 Silent p.I164I 0.32 TCGA-D9-A4Z3-01 11 118221328 118221328 C T CD3G Silent p.I123I 0.31 TCGA-D9-A4Z3-01 11 123624373 123624373 G A OR6X1 Missense_Mutation p.P285L 0.34 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z3-01 11 123848231 123848231 G A OR10S1 Silent p.L56L 0.43 TCGA-D9-A4Z3-01 11 124481634 124481634 G A PANX3 Splice_Site p.X61_splice 0.40 TCGA-D9-A4Z3-01 11 12951768 12951768 C T TEAD1 Silent p.N354N 0.26 TCGA-D9-A4Z3-01 11 17035708 17035708 C T PLEKHA7 Missense_Mutation p.G43R 0.50 deleterious(0) possibly_damaging(0.556) TCGA-D9-A4Z3-01 11 17409022 17409022 C T KCNJ11 Missense_Mutation p.R206H 0.28 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 11 18195802 18195802 G A MRGPRX4 3'UTR 0.42 TCGA-D9-A4Z3-01 11 18956058 18956058 G A MRGPRX1 Missense_Mutation p.H92Y 0.32 tolerated(0.83) benign(0.005) TCGA-D9-A4Z3-01 11 2182069 2182069 C T INS-IGF2 Missense_Mutation p.E45K 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-D9-A4Z3-01 11 22261174 22261174 C T ANO5 Silent p.H274H 0.34 TCGA-D9-A4Z3-01 11 22398996 22398996 C T SLC17A6 Missense_Mutation p.H487Y 0.46 deleterious(0) benign(0.034) TCGA-D9-A4Z3-01 11 2424529 2424529 C T TSSC4 Silent p.V222V 0.38 TCGA-D9-A4Z3-01 11 26692740 26692740 C T SLC5A12 Missense_Mutation p.G589E 0.26 tolerated(0.09) benign(0.025) TCGA-D9-A4Z3-01 11 27679378 27679378 C T BDNF Missense_Mutation p.R327K 0.33 tolerated(0.37) benign(0.14) TCGA-D9-A4Z3-01 11 36594965 36594965 C T RAG1 Silent p.S37S 0.36 TCGA-D9-A4Z3-01 11 36597009 36597009 G A RAG1 Missense_Mutation p.E719K 0.36 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-D9-A4Z3-01 11 40137212 40137212 C T LRRC4C Missense_Mutation p.E211K 0.26 tolerated(0.08) benign(0.021) TCGA-D9-A4Z3-01 11 44297015 44297015 G A ALX4 Silent p.T220T 0.43 TCGA-D9-A4Z3-01 11 46563868 46563868 G A AMBRA1 Missense_Mutation p.R477C 0.32 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-D9-A4Z3-01 11 48166409 48166409 G T PTPRJ Missense_Mutation p.G920W 0.26 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 11 48266964 48266964 G A OR4X2 Silent p.E103E 0.40 TCGA-D9-A4Z3-01 11 5172968 5172968 C T OR52A1 Missense_Mutation p.G211E 0.27 deleterious(0) probably_damaging(0.962) TCGA-D9-A4Z3-01 11 5475183 5475183 C T OR51I2 Silent p.T155T 0.35 TCGA-D9-A4Z3-01 11 55541054 55541054 G A OR5D13 Missense_Mutation p.M47I 0.42 tolerated(0.16) benign(0.05) TCGA-D9-A4Z3-01 11 55606653 55606653 C T OR5D16 Silent p.L142L 0.46 TCGA-D9-A4Z3-01 11 56185427 56185427 G A OR5R1 Silent p.F94F 0.56 TCGA-D9-A4Z3-01 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.40 TCGA-D9-A4Z3-01 11 57003960 57003960 C T APLNR Silent p.L173L 0.38 TCGA-D9-A4Z3-01 11 57947879 57947879 C T OR9Q1 3'UTR 0.33 TCGA-D9-A4Z3-01 11 58190386 58190386 C T OR5B2 Missense_Mutation p.A117T 0.41 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-D9-A4Z3-01 11 58723296 58723296 G A GLYATL1 Missense_Mutation p.M266I 0.42 tolerated(0.11) benign(0.007) TCGA-D9-A4Z3-01 11 5906312 5906312 C T OR52E4 Missense_Mutation p.R264C 0.40 deleterious(0.03) probably_damaging(0.913) TCGA-D9-A4Z3-01 11 59604786 59604786 C T GIF Nonsense_Mutation p.W244* 0.17 TCGA-D9-A4Z3-01 11 62296432 62296432 A G AHNAK Silent p.G1819G 0.37 TCGA-D9-A4Z3-01 11 62393362 62393362 G A GANAB Silent p.D942D 0.32 TCGA-D9-A4Z3-01 11 63176257 63176257 G A SLC22A9 Missense_Mutation p.G503R 0.28 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z3-01 11 64567094 64567094 G A MAP4K2 Missense_Mutation p.T326I 0.33 deleterious(0.02) possibly_damaging(0.737) TCGA-D9-A4Z3-01 11 6477533 6477533 G A TRIM3 Missense_Mutation p.R475C 0.32 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 11 6621304 6621304 G A RRP8 3'UTR 0.29 TCGA-D9-A4Z3-01 11 66807423 66807423 C T SYT12 Missense_Mutation p.P124S 0.30 tolerated(0.39) benign(0.009) TCGA-D9-A4Z3-01 11 66807424 66807424 C T SYT12 Missense_Mutation p.P124L 0.30 deleterious(0.04) benign(0.027) TCGA-D9-A4Z3-01 11 71149970 71149970 G A DHCR7 Silent p.L262L 0.37 TCGA-D9-A4Z3-01 11 71948483 71948484 - C INPPL1 Frame_Shift_Ins p.S1068Qfs*17 0.25 TCGA-D9-A4Z3-01 11 73071486 73071486 C G ARHGEF17 Missense_Mutation p.P1443R 0.36 tolerated(0.09) probably_damaging(0.925) TCGA-D9-A4Z3-01 11 74414511 74414511 C T CHRDL2 Missense_Mutation p.G262E 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 11 74414512 74414512 C T CHRDL2 Missense_Mutation p.G262R 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 11 76372417 76372417 C T LRRC32 Missense_Mutation p.A74T 0.39 tolerated(0.29) benign(0.158) TCGA-D9-A4Z3-01 11 77885272 77885272 G A KCTD21 Missense_Mutation p.A110V 0.43 tolerated(0.08) benign(0.02) TCGA-D9-A4Z3-01 11 78380729 78380729 C T TENM4 Missense_Mutation p.G2221R 0.40 deleterious(0.01) benign(0.404) TCGA-D9-A4Z3-01 11 78440578 78440578 G T TENM4 Silent p.T1083T 0.34 TCGA-D9-A4Z3-01 11 7846635 7846635 C T OR5P3 Silent p.K295K 0.34 TCGA-D9-A4Z3-01 11 8159949 8159949 G A RIC3 Intron 0.41 TCGA-D9-A4Z3-01 11 85711762 85711762 G A PICALM Missense_Mutation p.P360S 0.42 tolerated(0.1) probably_damaging(0.98) TCGA-D9-A4Z3-01 11 85975253 85975253 T C EED Missense_Mutation p.L225P 0.40 deleterious(0) probably_damaging(0.942) TCGA-D9-A4Z3-01 11 86119209 86119209 C T CCDC81 Missense_Mutation p.S337F 0.58 tolerated(0.7) benign(0.005) TCGA-D9-A4Z3-01 11 93808435 93808435 C T HEPHL1 Missense_Mutation p.P534S 0.35 tolerated(0.37) benign(0.124) TCGA-D9-A4Z3-01 11 94113639 94113639 G A GPR83 Silent p.S316S 0.49 TCGA-D9-A4Z3-01 12 101520688 101520688 C T ANO4 Missense_Mutation p.S868L 0.50 deleterious(0) benign(0.209) TCGA-D9-A4Z3-01 12 101768645 101768645 T C UTP20 Silent p.V2397V 0.48 TCGA-D9-A4Z3-01 12 103232983 103232983 G A PAH Silent p.I443I 0.30 TCGA-D9-A4Z3-01 12 103249033 103249033 G A PAH Missense_Mutation p.S196F 0.58 deleterious(0.01) benign(0.291) TCGA-D9-A4Z3-01 12 109186434 109186434 G A SSH1 Silent p.L507L 0.51 TCGA-D9-A4Z3-01 12 109940906 109940906 C T UBE3B Missense_Mutation p.S454F 0.52 deleterious(0.05) possibly_damaging(0.512) TCGA-D9-A4Z3-01 12 111291243 111291243 C T CCDC63 Missense_Mutation p.P15L 0.43 tolerated(0.85) benign(0.014) TCGA-D9-A4Z3-01 12 113424859 113424859 G A OAS2 Missense_Mutation p.R65Q 0.35 deleterious(0) probably_damaging(0.981) TCGA-D9-A4Z3-01 12 121659900 121659900 C T P2RX4 Missense_Mutation p.P136S 0.26 deleterious(0.01) benign(0.18) TCGA-D9-A4Z3-01 12 122735588 122735588 G A VPS33A Missense_Mutation p.T181I 0.36 tolerated(0.35) benign(0.152) TCGA-D9-A4Z3-01 12 12317359 12317359 G A LRP6 Missense_Mutation p.L634F 0.35 deleterious(0) probably_damaging(0.974) TCGA-D9-A4Z3-01 12 123286354 123286354 C A CCDC62 Missense_Mutation p.T554N 0.38 deleterious(0.02) possibly_damaging(0.862) TCGA-D9-A4Z3-01 12 123351773 123351773 G A VPS37B Missense_Mutation p.P250S 0.67 tolerated(0.16) benign(0.004) TCGA-D9-A4Z3-01 12 123425463 123425463 G A ABCB9 Missense_Mutation p.P487L 0.27 deleterious(0) probably_damaging(0.994) TCGA-D9-A4Z3-01 12 123425464 123425464 G A ABCB9 Missense_Mutation p.P487S 0.27 deleterious(0.04) probably_damaging(0.927) TCGA-D9-A4Z3-01 12 124163787 124163787 C T TCTN2 Missense_Mutation p.P172L 0.38 deleterious(0) benign(0.25) TCGA-D9-A4Z3-01 12 124297720 124297720 C T DNAH10 Missense_Mutation p.R934C 0.29 probably_damaging(1) TCGA-D9-A4Z3-01 12 124383294 124383294 C T DNAH10 Silent p.I3073I 0.60 TCGA-D9-A4Z3-01 12 18241859 18241859 G A RERGL Silent p.F29F 0.38 TCGA-D9-A4Z3-01 12 18891299 18891299 G A CAPZA3 Missense_Mutation p.D33N 0.52 deleterious(0.05) benign(0.358) TCGA-D9-A4Z3-01 12 21011501 21011501 G A LST3 Missense_Mutation p.G119R 0.26 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.35 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 12 247436 247436 G A IQSEC3 Missense_Mutation p.E303K 0.37 deleterious(0) probably_damaging(0.993) TCGA-D9-A4Z3-01 12 33031450 33031450 G A PKP2 Missense_Mutation p.R122C 0.38 tolerated(0.18) possibly_damaging(0.696) TCGA-D9-A4Z3-01 12 47471750 47471750 C T AMIGO2 Missense_Mutation p.G346R 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 12 48491775 48491775 A G SENP1 Splice_Site p.X45_splice 0.40 TCGA-D9-A4Z3-01 12 4920518 4920518 C T KCNA6 Silent p.I437I 0.37 TCGA-D9-A4Z3-01 12 50368136 50368136 G A AQP6 Silent p.A144A 0.43 TCGA-D9-A4Z3-01 12 52681465 52681465 G A KRT81 Missense_Mutation p.T314I 0.56 deleterious(0.03) benign(0.236) TCGA-D9-A4Z3-01 12 52942524 52942524 C T KRT71 Missense_Mutation p.M258I 0.41 deleterious(0.03) benign(0.004) TCGA-D9-A4Z3-01 12 54686796 54686796 C T NFE2 Missense_Mutation p.G162R 0.29 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 12 56120745 56120746 - AA CD63 Frame_Shift_Ins p.A87Lfs*26 0.26 TCGA-D9-A4Z3-01 12 57597027 57597027 G A LRP1 Nonsense_Mutation p.W3592* 0.24 TCGA-D9-A4Z3-01 12 58013999 58013999 C T SLC26A10 5'UTR 0.40 TCGA-D9-A4Z3-01 12 58114720 58114720 G A OS9 3'UTR 0.39 TCGA-D9-A4Z3-01 12 5841701 5841701 C T ANO2 Silent p.T510T 0.19 TCGA-D9-A4Z3-01 12 6120828 6120828 G A VWF Missense_Mutation p.P1933S 0.38 tolerated(0.12) possibly_damaging(0.857) TCGA-D9-A4Z3-01 12 6776965 6776965 G A ZNF384 Missense_Mutation p.P550L 0.41 deleterious(0.03) possibly_damaging(0.726) TCGA-D9-A4Z3-01 12 6776966 6776966 G A ZNF384 Missense_Mutation p.P550S 0.41 tolerated(0.3) possibly_damaging(0.641) TCGA-D9-A4Z3-01 12 69747059 69747059 A C LYZ 3'UTR 0.47 TCGA-D9-A4Z3-01 12 69968623 69968623 C T FRS2 Missense_Mutation p.A472V 0.41 deleterious(0) possibly_damaging(0.846) TCGA-D9-A4Z3-01 12 7169808 7169808 G A C1S Nonsense_Mutation p.W12* 0.36 TCGA-D9-A4Z3-01 12 73012741 73012741 C T TRHDE Missense_Mutation p.P753S 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-D9-A4Z3-01 12 77220694 77220694 C T ZDHHC17 Missense_Mutation p.R302W 0.43 deleterious(0) benign(0.353) TCGA-D9-A4Z3-01 12 7883451 7883451 G A CLEC4C Missense_Mutation p.P147S 0.41 tolerated(0.06) probably_damaging(0.996) TCGA-D9-A4Z3-01 12 81239603 81239603 G A LIN7A Missense_Mutation p.S130F 0.29 deleterious(0) probably_damaging(0.951) TCGA-D9-A4Z3-01 12 86198821 86198821 C G RASSF9 Missense_Mutation p.E323Q 0.33 tolerated(0.05) possibly_damaging(0.729) TCGA-D9-A4Z3-01 12 86198822 86198822 C T RASSF9 Silent p.L322L 0.34 TCGA-D9-A4Z3-01 12 86383274 86383274 C T MGAT4C Missense_Mutation p.M17I 0.27 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-D9-A4Z3-01 12 91449866 91449866 C T KERA Missense_Mutation p.E65K 0.42 tolerated(0.83) benign(0.01) TCGA-D9-A4Z3-01 12 9260172 9260172 G A A2M Missense_Mutation p.S276F 0.42 tolerated(0.16) benign(0.009) TCGA-D9-A4Z3-01 13 19751599 19751599 G A TUBA3C Missense_Mutation p.P175L 0.92 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 13 23928772 23928772 T C SACS Missense_Mutation p.Y660C 0.89 possibly_damaging(0.907) TCGA-D9-A4Z3-01 13 26621094 26621094 G A SHISA2 Missense_Mutation p.P149S 0.83 tolerated(0.33) probably_damaging(0.972) TCGA-D9-A4Z3-01 13 34410402 34410402 G A RFC3 Missense_Mutation p.M347I 0.89 tolerated(0.26) benign(0.002) TCGA-D9-A4Z3-01 13 34410403 34410403 G A RFC3 Missense_Mutation p.E348K 0.90 tolerated(0.09) benign(0.434) TCGA-D9-A4Z3-01 13 52439656 52439656 G A CCDC70 Missense_Mutation p.E48K 0.88 tolerated(0.06) possibly_damaging(0.706) TCGA-D9-A4Z3-01 13 61986306 61986306 C T PCDH20 Silent p.K642K 0.84 TCGA-D9-A4Z3-01 13 93518536 93518536 G A GPC5 Nonsense_Mutation p.W521* 0.85 TCGA-D9-A4Z3-01 13 96415967 96415967 C T DNAJC3 Missense_Mutation p.R307C 0.87 tolerated(0.06) possibly_damaging(0.857) TCGA-D9-A4Z3-01 14 103470339 103470339 G A CDC42BPB Missense_Mutation p.R125C 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 14 104490940 104490940 C T TDRD9 Missense_Mutation p.P881S 0.25 tolerated(0.07) benign(0.094) TCGA-D9-A4Z3-01 14 105356087 105356087 G C CEP170B Missense_Mutation p.E1290D 0.27 deleterious(0.03) possibly_damaging(0.723) TCGA-D9-A4Z3-01 14 106110061 106110061 G A IGHG2 Missense_Mutation p.T186I 0.42 deleterious(0) benign(0.024) TCGA-D9-A4Z3-01 14 106207978 106207978 C T IGHG1 Silent p.K275K 0.36 TCGA-D9-A4Z3-01 14 106320606 106320606 C T IGHM Missense_Mutation p.E402K 0.38 deleterious(0.04) probably_damaging(0.936) TCGA-D9-A4Z3-01 14 106780540 106780540 C T IGHV4-28 Silent p.V108V 0.34 TCGA-D9-A4Z3-01 14 20345329 20345329 G A OR4K2 Silent p.L301L 0.14 TCGA-D9-A4Z3-01 14 20404502 20404502 G A OR4K1 Missense_Mutation p.R226Q 0.14 tolerated(0.41) benign(0.005) TCGA-D9-A4Z3-01 14 21945354 21945354 C T TOX4 5'UTR 0.55 TCGA-D9-A4Z3-01 14 22356172 22356172 C T TRAV12-2 Silent p.L11L 0.50 TCGA-D9-A4Z3-01 14 23394111 23394111 C G PRMT5 Missense_Mutation p.D306H 0.08 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 14 23586998 23586998 G A CEBPE Missense_Mutation p.P182S 0.52 tolerated(0.7) benign(0.026) TCGA-D9-A4Z3-01 14 23861779 23861779 C T MYH6 Missense_Mutation p.E1112K 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A4Z3-01 14 23883308 23883308 C T MYH7 Missense_Mutation p.E1855K 0.39 deleterious(0) benign(0.26) TCGA-D9-A4Z3-01 14 24435491 24435491 G A DHRS4 Splice_Site p.X178_splice 0.28 TCGA-D9-A4Z3-01 14 24435492 24435492 G A DHRS4 Missense_Mutation p.G178S 0.28 tolerated(0.55) benign(0.084) TCGA-D9-A4Z3-01 14 24527380 24527380 C T LRRC16B Missense_Mutation p.L447F 0.42 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z3-01 14 24614322 24614322 G A PSME2 Missense_Mutation p.S102F 0.43 deleterious(0.04) benign(0.005) TCGA-D9-A4Z3-01 14 24708009 24708009 G A GMPR2 3'UTR 0.53 TCGA-D9-A4Z3-01 14 24776700 24776700 C T CIDEB Silent p.S21S 0.31 TCGA-D9-A4Z3-01 14 26949289 26949289 C T NOVA1 Missense_Mutation p.G114E 0.38 tolerated(0.9) unknown(0) TCGA-D9-A4Z3-01 14 29237522 29237522 C T FOXG1 Missense_Mutation p.T346I 0.44 deleterious(0) benign(0.425) TCGA-D9-A4Z3-01 14 35871118 35871118 G A NFKBIA 3'UTR 0.42 TCGA-D9-A4Z3-01 14 36096937 36096937 G A RALGAPA1 Silent p.T1566T 0.41 TCGA-D9-A4Z3-01 14 36226038 36226038 G T RALGAPA1 Missense_Mutation p.S208R 0.31 tolerated(0.49) possibly_damaging(0.628) TCGA-D9-A4Z3-01 14 44975202 44975202 G A FSCB Missense_Mutation p.P330L 0.35 deleterious(0.05) benign(0.022) TCGA-D9-A4Z3-01 14 52735285 52735285 G A PTGDR Silent p.R251R 0.39 TCGA-D9-A4Z3-01 14 58563470 58563470 G A C14orf37 Silent p.L687L 0.20 TCGA-D9-A4Z3-01 14 58768348 58768348 G A ARID4A Silent p.K19K 0.60 TCGA-D9-A4Z3-01 14 63447872 63447872 C T KCNH5 Silent p.V220V 0.47 TCGA-D9-A4Z3-01 14 64489551 64489551 G A SYNE2 Silent p.K1869K 0.26 TCGA-D9-A4Z3-01 14 65233446 65233446 G A SPTB Missense_Mutation p.P2115S 0.41 tolerated(0.5) benign(0.062) TCGA-D9-A4Z3-01 14 66200042 66200042 C T FUT8 Silent p.I451I 0.43 TCGA-D9-A4Z3-01 14 67669881 67669881 C T FAM71D Missense_Mutation p.S77F 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A4Z3-01 14 70263873 70263873 C T SLC10A1 5'UTR 0.37 TCGA-D9-A4Z3-01 14 70527625 70527625 C T SLC8A3 Missense_Mutation p.E606K 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-D9-A4Z3-01 14 70713681 70713681 C T ADAM21P1 RNA 0.39 TCGA-D9-A4Z3-01 14 71444132 71444132 A G PCNX Missense_Mutation p.K360E 0.47 tolerated_low_confidence(0.6) benign(0.003) TCGA-D9-A4Z3-01 14 73137924 73137924 C T DPF3 Missense_Mutation p.D332N 0.46 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-D9-A4Z3-01 14 73726011 73726011 C T PAPLN Silent p.H554H 0.25 TCGA-D9-A4Z3-01 14 73726012 73726012 C G PAPLN Missense_Mutation p.P555A 0.26 tolerated(0.1) benign(0.234) TCGA-D9-A4Z3-01 14 75555296 75555296 G A NEK9 Missense_Mutation p.L831F 0.35 tolerated_low_confidence(0.61) benign(0.034) TCGA-D9-A4Z3-01 14 77327075 77327075 G A C14orf166B Missense_Mutation p.G382R 0.38 tolerated(0.52) possibly_damaging(0.552) TCGA-D9-A4Z3-01 14 77492270 77492270 G A IRF2BPL Silent p.S622S 0.46 TCGA-D9-A4Z3-01 14 77492271 77492271 G A IRF2BPL Missense_Mutation p.S622F 0.46 deleterious(0) unknown(0) TCGA-D9-A4Z3-01 14 81744241 81744241 G A STON2 Missense_Mutation p.R472C 0.42 deleterious(0) probably_damaging(0.947) TCGA-D9-A4Z3-01 14 91369249 91369249 T C RPS6KA5 Missense_Mutation p.D341G 0.48 tolerated(0.46) benign(0.013) TCGA-D9-A4Z3-01 14 92251698 92251698 G A TC2N Silent p.F390F 0.42 TCGA-D9-A4Z3-01 14 92471750 92471750 G A TRIP11 Missense_Mutation p.S857F 0.42 tolerated(0.36) benign(0.046) TCGA-D9-A4Z3-01 14 93154522 93154522 G A RIN3 Silent p.R961R 0.45 TCGA-D9-A4Z3-01 14 94088185 94088185 G A UNC79 Missense_Mutation p.A1359T 0.63 tolerated_low_confidence(0.11) benign(0.108) TCGA-D9-A4Z3-01 14 95058453 95058453 G A SERPINA5 Silent p.T366T 0.36 TCGA-D9-A4Z3-01 15 101042017 101042017 C T CERS3 Missense_Mutation p.R13K 0.67 tolerated(0.19) benign(0.004) TCGA-D9-A4Z3-01 15 102300666 102300666 G A DNM1P47 RNA 0.26 TCGA-D9-A4Z3-01 15 22369472 22369472 C T OR4M2 Silent p.A299A 0.08 TCGA-D9-A4Z3-01 15 23335584 23335584 G A HERC2P2 RNA 0.21 TCGA-D9-A4Z3-01 15 23812054 23812054 G A MKRN3 Silent p.E375E 0.21 TCGA-D9-A4Z3-01 15 25446294 25446294 G A SNORD115-19 5'Flank 0.58 TCGA-D9-A4Z3-01 15 29993816 29993816 G A TJP1 Missense_Mutation p.L1744F 0.26 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z3-01 15 29997826 29997826 G A TJP1 Silent p.I1658I 0.21 TCGA-D9-A4Z3-01 15 35261781 35261781 C T AQR Missense_Mutation p.A12T 0.68 deleterious(0.05) benign(0.043) TCGA-D9-A4Z3-01 15 39910028 39910028 G A FSIP1 Missense_Mutation p.S536F 0.26 deleterious(0) possibly_damaging(0.884) TCGA-D9-A4Z3-01 15 40589767 40589767 C T PLCB2 Silent p.T426T 0.49 TCGA-D9-A4Z3-01 15 41105055 41105055 C G ZFYVE19 Missense_Mutation p.L329V 0.25 tolerated(0.52) benign(0.049) TCGA-D9-A4Z3-01 15 42129313 42129313 C T JMJD7 Nonsense_Mutation p.Q304* 0.70 TCGA-D9-A4Z3-01 15 42374026 42374026 C T PLA2G4D Missense_Mutation p.G264R 0.63 tolerated(0.52) benign(0.004) TCGA-D9-A4Z3-01 15 42455922 42455922 G A VPS39 Silent p.L677L 0.27 TCGA-D9-A4Z3-01 15 43748792 43748792 T A TP53BP1 Missense_Mutation p.I672F 0.50 deleterious(0) possibly_damaging(0.826) TCGA-D9-A4Z3-01 15 49716767 49716767 G A FGF7 Missense_Mutation p.M91I 0.33 tolerated(0.11) benign(0.009) TCGA-D9-A4Z3-01 15 50534849 50534849 G A HDC Missense_Mutation p.P533S 0.30 tolerated_low_confidence(0.19) benign(0.097) TCGA-D9-A4Z3-01 15 50926685 50926685 G A TRPM7 Missense_Mutation p.L301F 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A4Z3-01 15 51502939 51502939 G A CYP19A1 3'UTR 0.39 TCGA-D9-A4Z3-01 15 51502940 51502940 G A CYP19A1 3'UTR 0.41 TCGA-D9-A4Z3-01 15 53049957 53049957 C T ONECUT1 Missense_Mutation p.R398Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 15 55965624 55965624 C T PRTG Silent p.L599L 0.33 TCGA-D9-A4Z3-01 15 57744476 57744476 G A CGNL1 Silent p.K681K 0.45 TCGA-D9-A4Z3-01 15 58471453 58471453 G A AQP9 Missense_Mutation p.G208R 0.33 deleterious(0) probably_damaging(0.956) TCGA-D9-A4Z3-01 15 62986530 62986530 C T TLN2 Nonsense_Mutation p.R411* 0.14 TCGA-D9-A4Z3-01 15 73996237 73996237 C T CD276 Missense_Mutation p.S324F 0.32 tolerated(0.07) probably_damaging(0.989) TCGA-D9-A4Z3-01 15 75013610 75013610 G A CYP1A1 Missense_Mutation p.P366S 0.21 deleterious(0.02) probably_damaging(0.981) TCGA-D9-A4Z3-01 15 75980196 75980197 - GCCAC CSPG4 Frame_Shift_Ins p.V1071Wfs*3 0.16 TCGA-D9-A4Z3-01 15 76225224 76225224 T C FBXO22 Silent p.F331F 0.30 TCGA-D9-A4Z3-01 15 77907869 77907869 C A LINGO1 Missense_Mutation p.R127L 0.50 deleterious(0) probably_damaging(0.971) TCGA-D9-A4Z3-01 15 85383098 85383098 C T ALPK3 Silent p.I398I 0.11 TCGA-D9-A4Z3-01 15 85401339 85401339 C T ALPK3 Missense_Mutation p.P1326S 0.52 tolerated_low_confidence(0.63) benign(0.004) TCGA-D9-A4Z3-01 15 86702227 86702227 C T AGBL1 Missense_Mutation p.P107L 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-D9-A4Z3-01 15 89151351 89151351 G A MIR1179 RNA 0.34 TCGA-D9-A4Z3-01 15 90168542 90168542 G A TICRR Nonsense_Mutation p.W1667* 0.32 TCGA-D9-A4Z3-01 15 90902107 90902107 C T ZNF774 Silent p.S43S 0.33 TCGA-D9-A4Z3-01 16 1257344 1257344 C T CACNA1H Missense_Mutation p.L993F 0.31 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 16 1260910 1260910 G A CACNA1H Missense_Mutation p.G1388S 0.43 deleterious(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 16 16142123 16142123 C T ABCC1 Missense_Mutation p.P448L 0.17 deleterious(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 16 16142124 16142124 C T ABCC1 Silent p.P448P 0.19 TCGA-D9-A4Z3-01 16 16232340 16232340 C T ABCC1 Missense_Mutation p.T1471I 0.52 deleterious(0) possibly_damaging(0.781) TCGA-D9-A4Z3-01 16 16232341 16232341 C T ABCC1 Silent p.T1471T 0.52 TCGA-D9-A4Z3-01 16 20994162 20994162 G A DNAH3 Silent p.F2580F 0.34 TCGA-D9-A4Z3-01 16 21262098 21262098 A C ANKS4B Missense_Mutation p.Q404P 0.24 deleterious(0.01) possibly_damaging(0.698) TCGA-D9-A4Z3-01 16 21712301 21712301 G A OTOA Silent p.R311R 0.37 TCGA-D9-A4Z3-01 16 24226007 24226007 G A PRKCB Missense_Mutation p.R631Q 0.41 tolerated(0.35) benign(0.011) TCGA-D9-A4Z3-01 16 24581168 24581168 C T RBBP6 Missense_Mutation p.P1053S 0.36 tolerated_low_confidence(0.06) unknown(0) TCGA-D9-A4Z3-01 16 25235700 25235700 G A AQP8 Silent p.E135E 0.39 TCGA-D9-A4Z3-01 16 30507826 30507826 C T ITGAL Missense_Mutation p.L591F 0.33 deleterious(0) possibly_damaging(0.872) TCGA-D9-A4Z3-01 16 3063828 3063828 C T CLDN9 Silent p.A155A 0.50 TCGA-D9-A4Z3-01 16 3063829 3063829 C T CLDN9 Missense_Mutation p.L156F 0.51 deleterious(0) possibly_damaging(0.824) TCGA-D9-A4Z3-01 16 46744583 46744583 C T MYLK3 Missense_Mutation p.D745N 0.74 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 16 66612985 66612985 C T CMTM1 3'UTR 0.50 TCGA-D9-A4Z3-01 16 80718715 80718715 G A CDYL2 Silent p.P112P 0.50 TCGA-D9-A4Z3-01 16 80718716 80718716 G A CDYL2 Missense_Mutation p.P112L 0.53 tolerated(0.29) benign(0.008) TCGA-D9-A4Z3-01 16 87717796 87717796 G A JPH3 Silent p.Q403Q 0.56 TCGA-D9-A4Z3-01 16 88713210 88713210 G A CYBA Silent p.F80F 0.71 TCGA-D9-A4Z3-01 16 89653081 89653081 C T CPNE7 Nonsense_Mutation p.Q337* 0.83 TCGA-D9-A4Z3-01 16 9857384 9857384 T C GRIN2A Silent p.K1339K 0.46 TCGA-D9-A4Z3-01 17 10363572 10363572 G A MYH4 Missense_Mutation p.P405L 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 17 10363573 10363573 G A MYH4 Missense_Mutation p.P405S 0.35 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z3-01 17 10432791 10432791 C A MYH2 Missense_Mutation p.G1042V 0.29 deleterious(0) probably_damaging(0.946) TCGA-D9-A4Z3-01 17 11583189 11583189 G C DNAH9 Missense_Mutation p.E1157Q 0.36 benign(0.025) TCGA-D9-A4Z3-01 17 11648221 11648221 C T DNAH9 Silent p.S2073S 0.27 TCGA-D9-A4Z3-01 17 16610839 16610839 G A CCDC144A Missense_Mutation p.E241K 0.21 tolerated(0.12) benign(0.014) TCGA-D9-A4Z3-01 17 18002954 18002954 C T DRG2 Silent p.G128G 0.38 TCGA-D9-A4Z3-01 17 18882028 18882028 C T FAM83G Missense_Mutation p.M317I 0.28 deleterious(0.03) benign(0.391) TCGA-D9-A4Z3-01 17 26094815 26094815 G A NOS2 Missense_Mutation p.P695S 0.22 tolerated(0.31) probably_damaging(0.918) TCGA-D9-A4Z3-01 17 26603664 26603664 C T AC061975.8 5'Flank 0.69 TCGA-D9-A4Z3-01 17 29119578 29119578 C T CRLF3 Missense_Mutation p.G280D 0.62 tolerated(0.08) probably_damaging(1) TCGA-D9-A4Z3-01 17 29556474 29556474 C T NF1 Silent p.S947S 0.31 TCGA-D9-A4Z3-01 17 30349287 30349287 C T LRRC37B Silent p.P374P 0.30 TCGA-D9-A4Z3-01 17 3144402 3144402 C T OR1D4 RNA 0.22 TCGA-D9-A4Z3-01 17 3324457 3324457 C T OR3A3 Missense_Mutation p.S199F 0.33 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 17 34074184 34074184 G A GAS2L2 Silent p.S312S 0.37 TCGA-D9-A4Z3-01 17 3592832 3592832 G A P2RX5 Missense_Mutation p.S236F 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A4Z3-01 17 38133214 38133214 C T GSDMA Missense_Mutation p.S414L 0.41 tolerated(0.12) benign(0.129) TCGA-D9-A4Z3-01 17 39116727 39116727 C T KRT39 Silent p.T341T 0.38 TCGA-D9-A4Z3-01 17 39261715 39261715 C T KRTAP4-9 Silent p.C25C 0.47 TCGA-D9-A4Z3-01 17 39553645 39553645 C A KRT31 Missense_Mutation p.E49D 0.05 tolerated(0.18) benign(0.125) TCGA-D9-A4Z3-01 17 39775817 39775817 C T KRT17 3'UTR 0.38 TCGA-D9-A4Z3-01 17 41020220 41020220 C T AOC4P RNA 0.41 TCGA-D9-A4Z3-01 17 41055967 41055967 C T G6PC Missense_Mutation p.P84S 0.50 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 17 41142977 41142977 C T RUNDC1 Silent p.G362G 0.47 TCGA-D9-A4Z3-01 17 41243906 41243906 C A BRCA1 Missense_Mutation p.E1214D 0.42 deleterious(0.03) possibly_damaging(0.669) TCGA-D9-A4Z3-01 17 41245054 41245054 G A BRCA1 Missense_Mutation p.P832S 0.42 tolerated(0.21) benign(0.169) TCGA-D9-A4Z3-01 17 42452071 42452071 G A ITGA2B Missense_Mutation p.P967S 0.51 tolerated(0.09) possibly_damaging(0.817) TCGA-D9-A4Z3-01 17 43323270 43323270 G A FMNL1 Nonsense_Mutation p.W1007* 0.38 TCGA-D9-A4Z3-01 17 43323271 43323271 G A FMNL1 Nonsense_Mutation p.W1007* 0.38 TCGA-D9-A4Z3-01 17 43922587 43922587 G A SPPL2C Silent p.T105T 0.40 TCGA-D9-A4Z3-01 17 44248953 44248953 G A KANSL1 Missense_Mutation p.S186F 0.26 deleterious(0.02) benign(0.419) TCGA-D9-A4Z3-01 17 4498564 4498564 G A SMTNL2 Missense_Mutation p.E311K 0.44 deleterious(0.01) benign(0.013) TCGA-D9-A4Z3-01 17 45221303 45221303 G A CDC27 Silent p.N378N 0.31 TCGA-D9-A4Z3-01 17 4542748 4542748 A T ALOX15 Missense_Mutation p.V105D 0.31 tolerated(0.12) benign(0.273) TCGA-D9-A4Z3-01 17 45891144 45891144 C T OSBPL7 Missense_Mutation p.A470T 0.48 tolerated(0.05) benign(0.169) TCGA-D9-A4Z3-01 17 47587798 47587798 G A NGFR Missense_Mutation p.R198Q 0.30 tolerated(0.39) benign(0.014) TCGA-D9-A4Z3-01 17 47587799 47587799 G A NGFR Silent p.R198R 0.30 TCGA-D9-A4Z3-01 17 4837358 4837359 CT - GP1BA Frame_Shift_Del p.L488Rfs*9 0.32 TCGA-D9-A4Z3-01 17 4837429 4837429 G A GP1BA Silent p.G510G 0.40 TCGA-D9-A4Z3-01 17 48548427 48548427 C T ACSF2 Silent p.F418F 0.28 TCGA-D9-A4Z3-01 17 48601045 48601045 G A MYCBPAP Missense_Mutation p.R555Q 0.35 tolerated(0.17) benign(0.205) TCGA-D9-A4Z3-01 17 48750989 48750989 G A ABCC3 Missense_Mutation p.D857N 0.42 tolerated(0.36) benign(0.003) TCGA-D9-A4Z3-01 17 56386357 56386357 C T BZRAP1 Missense_Mutation p.E1426K 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-D9-A4Z3-01 17 56434692 56434692 G A RNF43 Intron 0.38 TCGA-D9-A4Z3-01 17 57287389 57287389 G A SMG8 5'UTR 0.71 TCGA-D9-A4Z3-01 17 60814014 60814014 G A MARCH10 Silent p.T405T 0.33 TCGA-D9-A4Z3-01 17 61568597 61568597 G A ACE Missense_Mutation p.E923K 0.17 tolerated(0.42) possibly_damaging(0.608) TCGA-D9-A4Z3-01 17 63157006 63157006 G A RGS9 Silent p.G134G 0.52 TCGA-D9-A4Z3-01 17 64881234 64881234 C T CACNG5 Silent p.D235D 0.34 TCGA-D9-A4Z3-01 17 72285743 72285743 G A DNAI2 Missense_Mutation p.E160K 0.17 tolerated(0.7) benign(0.004) TCGA-D9-A4Z3-01 17 73566171 73566171 C T LLGL2 Missense_Mutation p.P570L 0.18 tolerated(0.09) possibly_damaging(0.611) TCGA-D9-A4Z3-01 17 73774674 73774674 A C H3F3B 3'UTR 0.34 TCGA-D9-A4Z3-01 17 73915929 73915929 G A FBF1 Missense_Mutation p.S638L 0.51 tolerated(0.06) possibly_damaging(0.454) TCGA-D9-A4Z3-01 17 80051581 80051581 G A FASN Missense_Mutation p.T116I 0.29 deleterious(0) possibly_damaging(0.882) TCGA-D9-A4Z3-01 17 80391593 80391593 C T HEXDC Silent p.T114T 0.16 TCGA-D9-A4Z3-01 17 8792192 8792192 G A PIK3R5 Silent p.I304I 0.27 TCGA-D9-A4Z3-01 18 28737418 28737418 C T DSC1 Silent p.R89R 0.39 TCGA-D9-A4Z3-01 18 2885091 2885091 C T EMILIN2 Silent p.L129L 0.27 TCGA-D9-A4Z3-01 18 2885092 2885092 C T EMILIN2 Missense_Mutation p.R130C 0.27 tolerated(0.1) benign(0.416) TCGA-D9-A4Z3-01 18 34854406 34854406 G A CELF4 Silent p.S223S 0.41 TCGA-D9-A4Z3-01 18 44030261 44030261 C G RNF165 Silent p.V206V 0.44 TCGA-D9-A4Z3-01 18 44030264 44030264 C T RNF165 Silent p.V207V 0.44 TCGA-D9-A4Z3-01 18 44554593 44554593 C T TCEB3C Missense_Mutation p.G541R 0.06 tolerated(0.17) benign(0) TCGA-D9-A4Z3-01 18 44560486 44560486 C T TCEB3B Missense_Mutation p.E384K 0.38 deleterious(0.05) possibly_damaging(0.811) TCGA-D9-A4Z3-01 18 50929197 50929197 G A DCC Missense_Mutation p.E957K 0.36 deleterious(0) possibly_damaging(0.563) TCGA-D9-A4Z3-01 18 52262290 52262290 C T DYNAP Missense_Mutation p.L86F 0.42 tolerated(0.08) benign(0.002) TCGA-D9-A4Z3-01 18 56998709 56998709 G A LMAN1 Silent p.V479V 0.39 TCGA-D9-A4Z3-01 18 61260157 61260157 G A SERPINB13 Missense_Mutation p.D142N 0.31 deleterious(0) probably_damaging(0.97) TCGA-D9-A4Z3-01 18 61308107 61308107 C T SERPINB4 Splice_Site p.X157_splice 0.26 TCGA-D9-A4Z3-01 18 6958555 6958555 G A LAMA1 Missense_Mutation p.P2629S 0.48 deleterious(0.04) probably_damaging(1) TCGA-D9-A4Z3-01 18 77477645 77477645 C T CTDP1 Missense_Mutation p.P727S 0.39 deleterious(0.02) possibly_damaging(0.859) TCGA-D9-A4Z3-01 18 77733800 77733800 G A TXNL4A Missense_Mutation p.A105V 0.38 tolerated(0.36) benign(0.002) TCGA-D9-A4Z3-01 19 10100179 10100179 C T COL5A3 Missense_Mutation p.G671E 0.32 unknown(0) TCGA-D9-A4Z3-01 19 10131441 10131441 G A RDH8 Missense_Mutation p.E187K 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 19 10444285 10444285 C T RAVER1 5'UTR 0.75 TCGA-D9-A4Z3-01 19 11143992 11143992 C T SMARCA4 Silent p.H1191H 0.42 TCGA-D9-A4Z3-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.40 probably_damaging(1) TCGA-D9-A4Z3-01 19 11350541 11350541 C T C19orf80 Silent p.L76L 0.31 TCGA-D9-A4Z3-01 19 1254977 1254977 C T MIDN Missense_Mutation p.P258L 0.46 tolerated(0.11) possibly_damaging(0.713) TCGA-D9-A4Z3-01 19 1255597 1255597 C T MIDN Silent p.L345L 0.58 TCGA-D9-A4Z3-01 19 14705358 14705358 G A CLEC17A Missense_Mutation p.A103T 0.53 tolerated(0.11) benign(0.052) TCGA-D9-A4Z3-01 19 15063832 15063832 G A SLC1A6 Silent p.P469P 0.39 TCGA-D9-A4Z3-01 19 15063833 15063833 G A SLC1A6 Missense_Mutation p.P469L 0.39 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 19 15654797 15654797 G A CYP4F22 Missense_Mutation p.E319K 0.47 tolerated(0.28) benign(0.243) TCGA-D9-A4Z3-01 19 16677451 16677451 C T SLC35E1 Silent p.R216R 0.50 TCGA-D9-A4Z3-01 19 16875888 16875888 T G NWD1 Missense_Mutation p.I765M 0.37 deleterious(0.01) benign(0.135) TCGA-D9-A4Z3-01 19 17611525 17611525 C T SLC27A1 Silent p.D492D 0.17 TCGA-D9-A4Z3-01 19 19790846 19790846 C T ZNF101 Missense_Mutation p.P350S 0.53 tolerated(1) benign(0.003) TCGA-D9-A4Z3-01 19 20807519 20807519 C T ZNF626 Silent p.K388K 0.36 TCGA-D9-A4Z3-01 19 21991463 21991463 C A ZNF43 Missense_Mutation p.C459F 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 19 29699024 29699024 G A UQCRFS1 Missense_Mutation p.P86S 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 19 34991079 34991079 C T WTIP Missense_Mutation p.P400S 0.60 deleterious(0) probably_damaging(0.99) TCGA-D9-A4Z3-01 19 35791163 35791163 G A MAG Missense_Mutation p.D276N 0.24 tolerated(0.75) benign(0.01) TCGA-D9-A4Z3-01 19 36128155 36128155 A T RBM42 Nonsense_Mutation p.K411* 0.55 TCGA-D9-A4Z3-01 19 36605721 36605721 C T POLR2I Missense_Mutation p.G13D 0.48 deleterious(0.04) probably_damaging(1) TCGA-D9-A4Z3-01 19 36605722 36605722 C T POLR2I Missense_Mutation p.G13S 0.48 tolerated(0.23) probably_damaging(1) TCGA-D9-A4Z3-01 19 36858788 36858788 G A ZFP14 Missense_Mutation p.H3Y 0.44 tolerated(0.21) benign(0.009) TCGA-D9-A4Z3-01 19 37005917 37005917 C T ZNF260 Missense_Mutation p.R75K 0.57 tolerated(0.11) benign(0.007) TCGA-D9-A4Z3-01 19 37240154 37240154 T C ZNF850 Silent p.K596K 0.89 TCGA-D9-A4Z3-01 19 37309404 37309404 C T ZNF790 Silent p.E614E 0.53 TCGA-D9-A4Z3-01 19 37643951 37643951 G A ZNF585A Missense_Mutation p.H229Y 0.59 tolerated(0.2) possibly_damaging(0.665) TCGA-D9-A4Z3-01 19 3905637 3905637 C G ATCAY Missense_Mutation p.N114K 0.22 tolerated(0.06) benign(0.069) TCGA-D9-A4Z3-01 19 39805577 39805577 G A LRFN1 Missense_Mutation p.R134C 0.38 deleterious(0) possibly_damaging(0.899) TCGA-D9-A4Z3-01 19 39805578 39805578 G A LRFN1 Silent p.L133L 0.38 TCGA-D9-A4Z3-01 19 40739778 40739778 C T AKT2 3'UTR 0.22 TCGA-D9-A4Z3-01 19 41763460 41763460 G A AXL Silent p.V753V 0.25 TCGA-D9-A4Z3-01 19 43234015 43234015 C T PSG3 Silent p.T301T 0.26 TCGA-D9-A4Z3-01 19 4325490 4325490 C T STAP2 Silent p.Q294Q 0.42 TCGA-D9-A4Z3-01 19 43349333 43349333 G A PSG10P RNA 0.60 TCGA-D9-A4Z3-01 19 43433819 43433819 T G PSG7 Missense_Mutation p.T162P 0.62 tolerated(0.14) benign(0.303) TCGA-D9-A4Z3-01 19 45162022 45162022 G T PVR Missense_Mutation p.S335I 0.54 tolerated(0.24) possibly_damaging(0.675) TCGA-D9-A4Z3-01 19 45260646 45260646 G C BCL3 Missense_Mutation p.E263Q 0.41 tolerated(0.12) benign(0.143) TCGA-D9-A4Z3-01 19 46832714 46832714 C T HIF3A Missense_Mutation p.P564L 0.64 tolerated_low_confidence(0.13) benign(0.003) TCGA-D9-A4Z3-01 19 48734041 48734041 G A CARD8 Silent p.S255S 0.27 TCGA-D9-A4Z3-01 19 49360692 49360692 G A PLEKHA4 Missense_Mutation p.S345F 0.50 deleterious(0.02) probably_damaging(0.94) TCGA-D9-A4Z3-01 19 50208484 50208484 G A CPT1C Missense_Mutation p.G298E 0.30 deleterious(0.02) benign(0.086) TCGA-D9-A4Z3-01 19 50760635 50760635 C T MYH14 Silent p.F708F 0.40 TCGA-D9-A4Z3-01 19 51363418 51363418 G A KLK3 3'UTR 0.24 TCGA-D9-A4Z3-01 19 51728627 51728627 G A CD33 Missense_Mutation p.G64E 0.60 tolerated(0.14) possibly_damaging(0.855) TCGA-D9-A4Z3-01 19 51742803 51742803 C T CD33 Missense_Mutation p.P319S 0.44 tolerated(0.13) benign(0.012) TCGA-D9-A4Z3-01 19 52537279 52537279 G T ZNF432 Silent p.T551T 0.32 TCGA-D9-A4Z3-01 19 52793939 52793939 C T ZNF766 Missense_Mutation p.H299Y 0.55 tolerated(1) benign(0.004) TCGA-D9-A4Z3-01 19 53269323 53269323 G A ZNF600 Silent p.T562T 0.53 TCGA-D9-A4Z3-01 19 54191796 54191796 C T MIR1283-1 RNA 0.59 TCGA-D9-A4Z3-01 19 54245767 54245767 C T MIR520H RNA 0.44 TCGA-D9-A4Z3-01 19 55085884 55085884 G A LILRA2 Missense_Mutation p.E63K 0.69 deleterious(0.04) benign(0.141) TCGA-D9-A4Z3-01 19 55086453 55086453 C T LILRA2 Missense_Mutation p.P203L 0.25 deleterious(0.04) possibly_damaging(0.783) TCGA-D9-A4Z3-01 19 55526069 55526069 C T GP6 Missense_Mutation p.G415E 0.58 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-D9-A4Z3-01 19 55718307 55718307 C T PTPRH Silent p.R34R 0.63 TCGA-D9-A4Z3-01 19 56103979 56103979 G A FIZ1 Missense_Mutation p.P443L 0.53 tolerated(0.17) possibly_damaging(0.685) TCGA-D9-A4Z3-01 19 56702302 56702302 G A ZSCAN5B Missense_Mutation p.P215S 0.27 tolerated(0.09) benign(0.263) TCGA-D9-A4Z3-01 19 57286577 57286577 G A ZIM2 Missense_Mutation p.P355S 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-D9-A4Z3-01 19 57334181 57334181 C T PEG3 Missense_Mutation p.G169S 0.45 deleterious(0.01) possibly_damaging(0.647) TCGA-D9-A4Z3-01 19 57334182 57334182 C T PEG3 Silent p.R168R 0.43 TCGA-D9-A4Z3-01 19 57640962 57640962 C T USP29 Missense_Mutation p.P307S 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 19 57640963 57640963 C T USP29 Missense_Mutation p.P307L 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 19 58102227 58102227 C T ZIK1 Missense_Mutation p.P350S 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-D9-A4Z3-01 19 5831790 5831790 G A FUT6 Silent p.A263A 0.31 TCGA-D9-A4Z3-01 19 58578692 58578692 C T ZNF135 Silent p.N304N 0.52 TCGA-D9-A4Z3-01 19 58858262 58858262 G A A1BG 3'UTR 0.28 TCGA-D9-A4Z3-01 19 58967343 58967343 C T ZNF324B Silent p.S344S 0.67 TCGA-D9-A4Z3-01 19 6664879 6664879 G A TNFSF14 3'UTR 0.44 TCGA-D9-A4Z3-01 19 6681979 6681979 C T C3 Silent p.R1441R 0.48 TCGA-D9-A4Z3-01 19 6828466 6828466 G A VAV1 Missense_Mutation p.E354K 0.40 tolerated(0.41) benign(0.105) TCGA-D9-A4Z3-01 19 804073 804073 C G PTBP1 Missense_Mutation p.S51R 0.43 tolerated(0.27) benign(0.001) TCGA-D9-A4Z3-01 19 8657671 8657671 G C ADAMTS10 Missense_Mutation p.C521W 0.40 deleterious(0) possibly_damaging(0.779) TCGA-D9-A4Z3-01 19 9045740 9045740 G A MUC16 Missense_Mutation p.P11964L 0.44 benign(0.003) TCGA-D9-A4Z3-01 19 9048867 9048867 G A MUC16 Missense_Mutation p.P10922S 0.43 benign(0) TCGA-D9-A4Z3-01 19 9064566 9064566 G T MUC16 Missense_Mutation p.P7627H 0.47 unknown(0) TCGA-D9-A4Z3-01 19 9065041 9065041 C T MUC16 Missense_Mutation p.E7469K 0.40 unknown(0) TCGA-D9-A4Z3-01 1 110032592 110032592 C T ATXN7L2 Missense_Mutation p.P360S 0.35 tolerated(0.6) benign(0.066) TCGA-D9-A4Z3-01 1 110032593 110032593 C T ATXN7L2 Missense_Mutation p.P360L 0.34 tolerated(0.28) benign(0.003) TCGA-D9-A4Z3-01 1 110740902 110740902 C T SLC6A17 Missense_Mutation p.R674C 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-D9-A4Z3-01 1 11105495 11105495 C T MASP2 Missense_Mutation p.V172I 0.11 tolerated(1) benign(0) TCGA-D9-A4Z3-01 1 112240096 112240096 G A RAP1A Missense_Mutation p.E54K 0.40 deleterious(0) benign(0.398) TCGA-D9-A4Z3-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.31 tolerated(0.06) benign(0.006) TCGA-D9-A4Z3-01 1 115428173 115428173 T C SYCP1 Silent p.L310L 0.31 TCGA-D9-A4Z3-01 1 11561983 11561983 C T PTCHD2 Missense_Mutation p.R312W 0.77 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 1 1163999 1163999 G A SDF4 Missense_Mutation p.P59S 0.42 deleterious(0.01) possibly_damaging(0.521) TCGA-D9-A4Z3-01 1 117297369 117297369 G A CD2 Missense_Mutation p.E60K 0.58 tolerated(0.54) benign(0.174) TCGA-D9-A4Z3-01 1 117297376 117297376 C A CD2 Missense_Mutation p.T62N 0.59 tolerated(0.22) benign(0.001) TCGA-D9-A4Z3-01 1 12888624 12888624 G A PRAMEF11 5'UTR 0.38 TCGA-D9-A4Z3-01 1 1386026 1386026 C T ATAD3C 5'UTR 0.40 TCGA-D9-A4Z3-01 1 145075864 145075864 G A PDE4DIP 5'UTR 0.10 TCGA-D9-A4Z3-01 1 151742727 151742727 G A OAZ3 Missense_Mutation p.D142N 0.33 deleterious(0) probably_damaging(0.941) TCGA-D9-A4Z3-01 1 152080415 152080415 C T TCHH Missense_Mutation p.E1760K 0.35 unknown(0) TCGA-D9-A4Z3-01 1 152080416 152080416 C T TCHH Silent p.R1759R 0.35 TCGA-D9-A4Z3-01 1 152185609 152185609 A G HRNR Silent p.P2832P 0.30 TCGA-D9-A4Z3-01 1 152192141 152192141 C T HRNR Missense_Mutation p.G655E 0.30 unknown(0) TCGA-D9-A4Z3-01 1 152770383 152770383 C T LCE1D Missense_Mutation p.S38F 0.86 unknown(0) TCGA-D9-A4Z3-01 1 152957798 152957798 A G SPRR1A Missense_Mutation p.E31G 0.41 tolerated(0.05) possibly_damaging(0.728) TCGA-D9-A4Z3-01 1 153362614 153362614 G A S100A8 Missense_Mutation p.H83Y 0.43 deleterious(0) probably_damaging(0.92) TCGA-D9-A4Z3-01 1 155269926 155269926 G A PKLR Silent p.P82P 0.34 TCGA-D9-A4Z3-01 1 157522161 157522161 G A FCRL5 5'UTR 0.35 TCGA-D9-A4Z3-01 1 157771884 157771884 G A FCRL1 Missense_Mutation p.P236L 0.38 deleterious(0.01) benign(0.362) TCGA-D9-A4Z3-01 1 158299826 158299826 G A CD1B Silent p.F141F 0.39 TCGA-D9-A4Z3-01 1 158436256 158436256 G A OR10K1 Missense_Mutation p.R302Q 0.40 tolerated(0.16) benign(0.004) TCGA-D9-A4Z3-01 1 158736386 158736386 G A OR6N1 Silent p.L29L 0.46 TCGA-D9-A4Z3-01 1 159410425 159410425 C T OR10J1 Missense_Mutation p.P293S 0.38 deleterious(0.04) probably_damaging(1) TCGA-D9-A4Z3-01 1 159901688 159901688 C T IGSF9 Missense_Mutation p.E426K 0.29 tolerated(0.51) benign(0.049) TCGA-D9-A4Z3-01 1 161163569 161163569 G C ADAMTS4 Missense_Mutation p.C532W 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 16262467 16262467 C T SPEN Silent p.T3244T 0.58 TCGA-D9-A4Z3-01 1 16736390 16736390 G T SPATA21 Missense_Mutation p.S98Y 0.35 deleterious(0.01) benign(0.445) TCGA-D9-A4Z3-01 1 167805771 167805771 C T ADCY10 Missense_Mutation p.E1029K 0.56 tolerated(0.08) benign(0.018) TCGA-D9-A4Z3-01 1 172001583 172001583 G A DNM3 Missense_Mutation p.D211N 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 173456933 173456933 C T PRDX6 Silent p.F202F 0.27 TCGA-D9-A4Z3-01 1 175355367 175355367 G A TNR Silent p.P526P 0.32 TCGA-D9-A4Z3-01 1 17594408 17594408 C T PADI3 Silent p.L201L 0.35 TCGA-D9-A4Z3-01 1 176762710 176762710 C T PAPPA2 Missense_Mutation p.P1679S 0.32 tolerated(0.06) benign(0.415) TCGA-D9-A4Z3-01 1 176915132 176915132 C T ASTN1 Missense_Mutation p.E727K 0.35 deleterious(0) benign(0.235) TCGA-D9-A4Z3-01 1 176934324 176934324 C T ASTN1 Missense_Mutation p.E525K 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D9-A4Z3-01 1 179437748 179437748 C T AXDND1 Missense_Mutation p.P657S 0.25 tolerated(0.07) benign(0.023) TCGA-D9-A4Z3-01 1 181702138 181702138 G A CACNA1E Silent p.T972T 0.43 TCGA-D9-A4Z3-01 1 182356320 182356320 C T GLUL Missense_Mutation p.D92N 0.41 deleterious(0.01) possibly_damaging(0.519) TCGA-D9-A4Z3-01 1 182636032 182636032 G A RGS8 Missense_Mutation p.P53S 0.47 tolerated(0.45) possibly_damaging(0.858) TCGA-D9-A4Z3-01 1 183191251 183191251 G A LAMC2 Missense_Mutation p.R223Q 0.37 deleterious(0.03) benign(0.284) TCGA-D9-A4Z3-01 1 183205733 183205733 C G LAMC2 Silent p.S865S 0.32 TCGA-D9-A4Z3-01 1 184859248 184859248 G A FAM129A Missense_Mutation p.P143S 0.46 deleterious(0.02) probably_damaging(0.971) TCGA-D9-A4Z3-01 1 19651187 19651187 C T PQLC2 Silent p.L75L 0.48 TCGA-D9-A4Z3-01 1 19651188 19651188 C T PQLC2 Silent p.L76L 0.47 TCGA-D9-A4Z3-01 1 196695675 196695675 G A CFH Missense_Mutation p.G650E 0.45 tolerated(1) benign(0.001) TCGA-D9-A4Z3-01 1 197071568 197071568 C T ASPM Silent p.R2271R 0.33 TCGA-D9-A4Z3-01 1 197073649 197073649 G A ASPM Nonsense_Mutation p.R1578* 0.43 TCGA-D9-A4Z3-01 1 200965501 200965501 C T KIF21B Silent p.E700E 0.43 TCGA-D9-A4Z3-01 1 201191880 201191880 C T IGFN1 Silent p.F3405F 0.39 TCGA-D9-A4Z3-01 1 201287848 201287848 G A PKP1 Nonsense_Mutation p.W386* 0.48 TCGA-D9-A4Z3-01 1 20248868 20248868 C T PLA2G2E Missense_Mutation p.G70E 0.59 tolerated(0.55) benign(0.048) TCGA-D9-A4Z3-01 1 203192268 203192268 G A CHIT1 Silent p.I200I 0.44 TCGA-D9-A4Z3-01 1 205277762 205277762 C T NUAK2 Missense_Mutation p.E151K 0.38 deleterious(0) possibly_damaging(0.711) TCGA-D9-A4Z3-01 1 206328787 206328787 C T CTSE Missense_Mutation p.S285F 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 206328788 206328788 C T CTSE Silent p.S285S 0.30 TCGA-D9-A4Z3-01 1 206821315 206821315 G A DYRK3 Missense_Mutation p.E258K 0.40 deleterious(0.05) probably_damaging(0.994) TCGA-D9-A4Z3-01 1 207110764 207110764 C T PIGR Missense_Mutation p.E241K 0.42 tolerated(0.08) benign(0.016) TCGA-D9-A4Z3-01 1 207642046 207642046 C T CR2 Missense_Mutation p.P207L 0.41 tolerated(0.44) benign(0.037) TCGA-D9-A4Z3-01 1 207642047 207642047 C T CR2 Silent p.P207P 0.42 TCGA-D9-A4Z3-01 1 223988497 223988497 G A TP53BP2 Missense_Mutation p.P414L 0.33 tolerated(0.15) benign(0.001) TCGA-D9-A4Z3-01 1 226925114 226925114 T C ITPKB Missense_Mutation p.S16G 0.47 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-D9-A4Z3-01 1 229794885 229794885 G T URB2 Missense_Mutation p.E1472D 0.35 deleterious(0.01) possibly_damaging(0.884) TCGA-D9-A4Z3-01 1 230895258 230895258 G C CAPN9 Missense_Mutation p.G95A 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 231472294 231472294 G A EXOC8 Missense_Mutation p.P400S 0.34 deleterious(0) probably_damaging(0.964) TCGA-D9-A4Z3-01 1 231472295 231472295 G A EXOC8 Silent p.S399S 0.36 TCGA-D9-A4Z3-01 1 2327258 2327258 C T RER1 Missense_Mutation p.S10F 0.32 deleterious(0) possibly_damaging(0.698) TCGA-D9-A4Z3-01 1 23637421 23637432 ACCATAGTAATC - HNRNPR In_Frame_Del p.D476_G479del 0.31 TCGA-D9-A4Z3-01 1 24663144 24663144 C T GRHL3 Missense_Mutation p.P147S 0.45 tolerated(0.44) benign(0.002) TCGA-D9-A4Z3-01 1 247752312 247752312 C T OR2G2 Silent p.I217I 0.31 TCGA-D9-A4Z3-01 1 248436155 248436155 C T OR2T33 Silent p.%3D 0.34 TCGA-D9-A4Z3-01 1 248436378 248436378 C T OR2T33 Missense_Mutation p.G247R 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-D9-A4Z3-01 1 248551795 248551795 G A OR2T6 Missense_Mutation p.D296N 0.33 deleterious(0.04) probably_damaging(0.945) TCGA-D9-A4Z3-01 1 249211273 249211274 TA - PGBD2 Frame_Shift_Del p.Y164Cfs*50 0.29 TCGA-D9-A4Z3-01 1 2530228 2530228 C T MMEL1 Missense_Mutation p.G348E 0.40 tolerated(0.85) possibly_damaging(0.521) TCGA-D9-A4Z3-01 1 26691607 26691607 C T ZNF683 Missense_Mutation p.G144R 0.62 deleterious(0.04) probably_damaging(0.978) TCGA-D9-A4Z3-01 1 27426816 27426816 G A SLC9A1 Silent p.F810F 0.39 TCGA-D9-A4Z3-01 1 28086074 28086074 C T FAM76A Missense_Mutation p.S292L 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-D9-A4Z3-01 1 28793028 28793028 C T PHACTR4 Missense_Mutation p.S201F 0.37 tolerated_low_confidence(0.38) possibly_damaging(0.583) TCGA-D9-A4Z3-01 1 28793236 28793236 C T PHACTR4 Silent p.I270I 0.37 TCGA-D9-A4Z3-01 1 32051392 32051392 G A TINAGL1 Missense_Mutation p.G378R 0.27 tolerated(0.17) benign(0.005) TCGA-D9-A4Z3-01 1 32259367 32259367 G A SPOCD1 Missense_Mutation p.P839S 0.42 tolerated(0.22) benign(0.147) TCGA-D9-A4Z3-01 1 32498826 32498826 C T KHDRBS1 Missense_Mutation p.A221V 0.38 tolerated(0.08) possibly_damaging(0.462) TCGA-D9-A4Z3-01 1 32792652 32792652 C T HDAC1 Silent p.I156I 0.40 TCGA-D9-A4Z3-01 1 33272179 33272179 G A YARS Silent p.S138S 0.39 TCGA-D9-A4Z3-01 1 34015840 34015840 C T CSMD2 Missense_Mutation p.G2808R 0.33 deleterious(0) probably_damaging(0.983) TCGA-D9-A4Z3-01 1 36888436 36888436 C T OSCP1 Missense_Mutation p.V228I 0.44 tolerated(0.43) benign(0.003) TCGA-D9-A4Z3-01 1 37282857 37282857 G A GRIK3 Missense_Mutation p.A632V 0.53 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 39957963 39957963 C T BMP8A Silent p.G100G 0.88 TCGA-D9-A4Z3-01 1 42744050 42744050 G A FOXJ3 Missense_Mutation p.P113L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A4Z3-01 1 42744051 42744051 G A FOXJ3 Missense_Mutation p.P113S 0.44 deleterious(0) probably_damaging(0.991) TCGA-D9-A4Z3-01 1 43912675 43912675 A T SZT2 Missense_Mutation p.H2984L 0.56 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 1 43912676 43912676 C T SZT2 Silent p.H2984H 0.53 TCGA-D9-A4Z3-01 1 45268772 45268772 C T PLK3 Missense_Mutation p.P299S 0.26 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 47655565 47655565 C T PDZK1IP1 Missense_Mutation p.A14T 0.28 tolerated(0.08) benign(0.009) TCGA-D9-A4Z3-01 1 53544091 53544091 C T PODN Silent p.V351V 0.26 TCGA-D9-A4Z3-01 1 53544220 53544220 G A PODN Silent p.R394R 0.26 TCGA-D9-A4Z3-01 1 55152105 55152105 C T MROH7 Missense_Mutation p.P899S 0.40 tolerated(0.54) benign(0.001) TCGA-D9-A4Z3-01 1 55598326 55598326 G A USP24 Silent p.S1143S 0.32 TCGA-D9-A4Z3-01 1 55598327 55598327 G A USP24 Missense_Mutation p.S1143F 0.32 deleterious(0.03) possibly_damaging(0.597) TCGA-D9-A4Z3-01 1 57417739 57417739 C T C8B Silent p.V216V 0.32 TCGA-D9-A4Z3-01 1 62923294 62923294 G T DOCK7 Missense_Mutation p.H2068N 0.56 tolerated(1) benign(0.003) TCGA-D9-A4Z3-01 1 64027419 64027419 G A EFCAB7 Missense_Mutation p.G463E 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 1 66102039 66102039 G A LEPR Missense_Mutation p.D947N 0.38 deleterious(0) benign(0.259) TCGA-D9-A4Z3-01 1 71512400 71512400 G A PTGER3 Silent p.I287I 0.36 TCGA-D9-A4Z3-01 1 75683631 75683631 G A SLC44A5 Missense_Mutation p.S515F 0.47 deleterious(0) probably_damaging(0.991) TCGA-D9-A4Z3-01 1 78958793 78958793 C T PTGFR Missense_Mutation p.P122L 0.27 deleterious(0) probably_damaging(0.963) TCGA-D9-A4Z3-01 1 86959080 86959080 G A CLCA1 Missense_Mutation p.G493E 0.69 tolerated(0.12) probably_damaging(1) TCGA-D9-A4Z3-01 1 9305506 9305506 C T H6PD Silent p.V171V 0.63 TCGA-D9-A4Z3-01 1 99772543 99772543 C T LPPR4 Missense_Mutation p.P757S 0.34 tolerated(0.16) benign(0.079) TCGA-D9-A4Z3-01 1 99772544 99772544 C T LPPR4 Missense_Mutation p.P757L 0.34 tolerated(0.26) benign(0.02) TCGA-D9-A4Z3-01 20 19677555 19677555 G A SLC24A3 Missense_Mutation p.G536R 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 20 23350920 23350920 A T GZF1 Missense_Mutation p.M660L 0.43 tolerated(1) benign(0) TCGA-D9-A4Z3-01 20 30659483 30659483 C T HCK Silent p.S27S 0.43 TCGA-D9-A4Z3-01 20 30746296 30746296 C T TM9SF4 Silent p.I516I 0.42 TCGA-D9-A4Z3-01 20 31291165 31291165 G A COMMD7 3'UTR 0.29 TCGA-D9-A4Z3-01 20 31393192 31393192 G A DNMT3B Silent p.L760L 0.30 TCGA-D9-A4Z3-01 20 31887785 31887785 C T BPIFB1 Silent p.L248L 0.53 TCGA-D9-A4Z3-01 20 33587427 33587427 G A MYH7B Missense_Mutation p.E1574K 0.40 probably_damaging(0.997) TCGA-D9-A4Z3-01 20 33875363 33875363 G A FAM83C Missense_Mutation p.P407S 0.38 tolerated_low_confidence(0.45) benign(0.004) TCGA-D9-A4Z3-01 20 34025333 34025333 C T GDF5 Missense_Mutation p.G126R 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-D9-A4Z3-01 20 34207659 34207659 C T SPAG4 Silent p.F356F 0.46 TCGA-D9-A4Z3-01 20 37524220 37524220 A C PPP1R16B Missense_Mutation p.N112H 0.40 deleterious(0) benign(0.259) TCGA-D9-A4Z3-01 20 40052233 40052233 G A CHD6 Missense_Mutation p.S1485F 0.43 deleterious(0) probably_damaging(0.959) TCGA-D9-A4Z3-01 20 40980743 40980743 C T PTPRT Silent p.R581R 0.30 TCGA-D9-A4Z3-01 20 41100957 41100957 G A PTPRT Missense_Mutation p.P467S 0.42 tolerated(0.08) benign(0.085) TCGA-D9-A4Z3-01 20 42694391 42694391 A G TOX2 Missense_Mutation p.N334D 0.34 tolerated(0.11) benign(0.214) TCGA-D9-A4Z3-01 20 43743701 43743701 G A WFDC5 Silent p.L8L 0.29 TCGA-D9-A4Z3-01 20 43933431 43933431 C T MATN4 Missense_Mutation p.R27K 0.56 benign(0.001) TCGA-D9-A4Z3-01 20 44869865 44869865 G A CDH22 Missense_Mutation p.A96V 0.33 deleterious(0.03) possibly_damaging(0.739) TCGA-D9-A4Z3-01 20 44986361 44986361 G C SLC35C2 Missense_Mutation p.L58V 0.38 tolerated(0.9) benign(0.016) TCGA-D9-A4Z3-01 20 50158908 50158908 C T NFATC2 Splice_Site p.X44_splice 0.62 TCGA-D9-A4Z3-01 20 50769007 50769007 T G ZFP64 Missense_Mutation p.E575A 0.50 tolerated(0.13) benign(0.003) TCGA-D9-A4Z3-01 20 50769008 50769008 C T ZFP64 Missense_Mutation p.E575K 0.48 tolerated(0.17) benign(0.005) TCGA-D9-A4Z3-01 20 51870675 51870675 C T TSHZ2 Silent p.T226T 0.52 TCGA-D9-A4Z3-01 20 51870774 51870774 G A TSHZ2 Silent p.R259R 0.39 TCGA-D9-A4Z3-01 20 51872583 51872583 G A TSHZ2 Silent p.S862S 0.23 TCGA-D9-A4Z3-01 20 52569975 52569975 C T BCAS1 Missense_Mutation p.G559D 0.32 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z3-01 20 55012289 55012289 G A CASS4 Missense_Mutation p.D36N 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 20 56227485 56227485 C T PMEPA1 Missense_Mutation p.G163D 0.59 deleterious(0.04) probably_damaging(0.968) TCGA-D9-A4Z3-01 20 57767106 57767106 G A ZNF831 Silent p.S344S 0.35 TCGA-D9-A4Z3-01 20 57829072 57829072 C T ZNF831 Silent p.P1436P 0.39 TCGA-D9-A4Z3-01 20 60578913 60578913 G A TAF4 Missense_Mutation p.P749S 0.39 benign(0.095) TCGA-D9-A4Z3-01 20 60907443 60907443 C T LAMA5 Silent p.Q1179Q 0.47 TCGA-D9-A4Z3-01 20 61542407 61542407 A G DIDO1 Silent p.S186S 0.49 TCGA-D9-A4Z3-01 20 6759583 6759583 G C BMP2 Missense_Mutation p.Q346H 0.43 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z3-01 20 8722109 8722109 A T PLCB1 Splice_Site p.X805_splice 0.36 TCGA-D9-A4Z3-01 20 8722110 8722110 G A PLCB1 Splice_Site p.X805_splice 0.38 TCGA-D9-A4Z3-01 21 19666685 19666685 C T TMPRSS15 Nonsense_Mutation p.W796* 0.49 TCGA-D9-A4Z3-01 21 26976125 26976125 G A MRPL39 Missense_Mutation p.P135S 0.44 tolerated(0.05) possibly_damaging(0.857) TCGA-D9-A4Z3-01 21 27117662 27117662 C T GABPA Silent p.I73I 0.08 TCGA-D9-A4Z3-01 21 31863871 31863871 G C KRTAP19-3 3'UTR 0.33 TCGA-D9-A4Z3-01 21 35195852 35195852 G A ITSN1 Silent p.G1026G 0.38 TCGA-D9-A4Z3-01 21 41033439 41033439 C T B3GALT5 3'UTR 0.40 TCGA-D9-A4Z3-01 21 41033440 41033440 C T B3GALT5 3'UTR 0.40 TCGA-D9-A4Z3-01 21 41550967 41550967 G A DSCAM Missense_Mutation p.A945V 0.21 deleterious(0.04) benign(0) TCGA-D9-A4Z3-01 21 42808946 42808946 C T MX1 Silent p.I101I 0.41 TCGA-D9-A4Z3-01 21 43325928 43325928 G A C2CD2 Missense_Mutation p.P446L 0.38 deleterious(0) probably_damaging(0.92) TCGA-D9-A4Z3-01 21 43325929 43325929 G A C2CD2 Missense_Mutation p.P446S 0.37 deleterious(0.05) benign(0.266) TCGA-D9-A4Z3-01 21 43519064 43519064 C T UMODL1 Silent p.V320V 0.36 TCGA-D9-A4Z3-01 21 43809058 43809058 C T TMPRSS3 Missense_Mutation p.G101E 0.24 deleterious(0.03) probably_damaging(0.949) TCGA-D9-A4Z3-01 21 47414119 47414119 C T COL6A1 Silent p.G458G 0.20 TCGA-D9-A4Z3-01 21 47414120 47414120 C T COL6A1 Missense_Mutation p.P459S 0.20 tolerated(0.3) probably_damaging(0.946) TCGA-D9-A4Z3-01 21 47855918 47855918 C G PCNT Silent p.R2951R 0.32 TCGA-D9-A4Z3-01 21 47855922 47855922 C T PCNT Missense_Mutation p.H2953Y 0.34 benign(0.403) TCGA-D9-A4Z3-01 22 17071902 17071902 C T CCT8L2 Silent p.Q513Q 0.37 TCGA-D9-A4Z3-01 22 20114499 20114499 C T RANBP1 Missense_Mutation p.A177V 0.42 tolerated(0.23) benign(0.021) TCGA-D9-A4Z3-01 22 20457275 20457275 C T RIMBP3 Missense_Mutation p.E1343K 0.38 tolerated(0.1) benign(0.22) TCGA-D9-A4Z3-01 22 20457276 20457276 C T RIMBP3 Silent p.Q1342Q 0.38 TCGA-D9-A4Z3-01 22 21328382 21328382 C T AIFM3 Missense_Mutation p.P129L 0.45 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 22 23011165 23011165 C T IGLV3-27 Silent p.I76I 0.35 TCGA-D9-A4Z3-01 22 23241807 23241807 C T IGLL5 3'Flank 0.17 TCGA-D9-A4Z3-01 22 25270478 25270478 G A SGSM1 Missense_Mutation p.G463E 0.21 tolerated(1) benign(0.001) TCGA-D9-A4Z3-01 22 25755923 25755923 C G LRP5L Missense_Mutation p.R46P 0.52 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 22 29139878 29139878 C T HSCB Missense_Mutation p.S82F 0.49 deleterious(0) probably_damaging(0.925) TCGA-D9-A4Z3-01 22 29494916 29494916 G A KREMEN1 Silent p.K109K 0.54 TCGA-D9-A4Z3-01 22 29708319 29708319 C T GAS2L1 3'Flank 0.46 TCGA-D9-A4Z3-01 22 37333850 37333850 C T CSF2RB Missense_Mutation p.S667F 0.56 tolerated(0.33) benign(0.099) TCGA-D9-A4Z3-01 22 37333851 37333851 C T CSF2RB Silent p.S667S 0.56 TCGA-D9-A4Z3-01 22 37491995 37491995 G T TMPRSS6 Silent p.V189V 0.38 TCGA-D9-A4Z3-01 22 37769436 37769436 G A ELFN2 Silent p.P713P 0.36 TCGA-D9-A4Z3-01 22 37769437 37769437 G A ELFN2 Missense_Mutation p.P713L 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 22 40662432 40662432 G A TNRC6B Missense_Mutation p.G733E 0.36 deleterious(0) possibly_damaging(0.725) TCGA-D9-A4Z3-01 22 43986071 43986071 G C EFCAB6 Missense_Mutation p.A972G 0.42 deleterious(0.05) benign(0.049) TCGA-D9-A4Z3-01 22 46327188 46327188 G T WNT7B Silent p.T120T 0.44 TCGA-D9-A4Z3-01 22 50957676 50957676 A G NCAPH2 Missense_Mutation p.E263G 0.40 tolerated(0.44) benign(0.001) TCGA-D9-A4Z3-01 2 100170904 100170904 G A AFF3 Missense_Mutation p.S1168F 0.39 deleterious(0) probably_damaging(0.947) TCGA-D9-A4Z3-01 2 102968048 102968048 C T IL1RL1 Silent p.F446F 0.51 TCGA-D9-A4Z3-01 2 108875273 108875273 G A SULT1C3 Missense_Mutation p.D204N 0.54 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z3-01 2 110849295 110849295 G A MALL Missense_Mutation p.P53L 0.16 deleterious(0) possibly_damaging(0.886) TCGA-D9-A4Z3-01 2 113500257 113500257 G A NT5DC4 3'UTR 0.29 TCGA-D9-A4Z3-01 2 113539379 113539379 C T IL1A Missense_Mutation p.G41S 0.29 tolerated(0.64) probably_damaging(0.982) TCGA-D9-A4Z3-01 2 116525977 116525977 C T DPP10 Silent p.I410I 0.58 TCGA-D9-A4Z3-01 2 1168853 1168853 G A SNTG2 Missense_Mutation p.G192E 0.34 tolerated(0.1) probably_damaging(0.935) TCGA-D9-A4Z3-01 2 120847962 120847962 C T EPB41L5 Missense_Mutation p.H305Y 0.45 deleterious(0.01) probably_damaging(0.979) TCGA-D9-A4Z3-01 2 128775270 128775270 G A SAP130 Missense_Mutation p.S137L 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-D9-A4Z3-01 2 136561546 136561546 G A LCT Silent p.P1539P 0.36 TCGA-D9-A4Z3-01 2 138030231 138030231 C T THSD7B Missense_Mutation p.R799W 0.43 deleterious(0) possibly_damaging(0.835) TCGA-D9-A4Z3-01 2 141242965 141242965 G A LRP1B Silent p.L3124L 0.34 TCGA-D9-A4Z3-01 2 141607853 141607853 C T LRP1B Missense_Mutation p.G1586E 0.26 probably_damaging(0.931) TCGA-D9-A4Z3-01 2 141643791 141643791 C T LRP1B Missense_Mutation p.D1294N 0.47 possibly_damaging(0.539) TCGA-D9-A4Z3-01 2 1459998 1459998 G A TPO Missense_Mutation p.G255R 0.22 tolerated(0.07) benign(0.111) TCGA-D9-A4Z3-01 2 160053229 160053229 C T TANC1 Silent p.P1030P 0.27 TCGA-D9-A4Z3-01 2 160755548 160755548 G A LY75-CD302 Silent p.V39V 0.26 TCGA-D9-A4Z3-01 2 166848493 166848493 G A SCN1A Silent p.F1764F 0.34 TCGA-D9-A4Z3-01 2 16769331 16769331 G C FAM49A Missense_Mutation p.F19L 0.24 deleterious(0.01) benign(0.11) TCGA-D9-A4Z3-01 2 168106668 168106668 G A XIRP2 Silent p.Q2922Q 0.41 TCGA-D9-A4Z3-01 2 169764443 169764443 C T G6PC2 Missense_Mutation p.H308Y 0.45 deleterious(0) benign(0.081) TCGA-D9-A4Z3-01 2 171243659 171243659 C T MYO3B Missense_Mutation p.S473F 0.33 deleterious(0) benign(0.285) TCGA-D9-A4Z3-01 2 171243660 171243660 C T MYO3B Silent p.S473S 0.34 TCGA-D9-A4Z3-01 2 172953133 172953133 C T DLX1 3'UTR 0.38 TCGA-D9-A4Z3-01 2 172953134 172953134 C T DLX1 3'UTR 0.38 TCGA-D9-A4Z3-01 2 182412343 182412343 A G CERKL Splice_Site p.X449_splice 0.38 TCGA-D9-A4Z3-01 2 186672707 186672707 C T FSIP2 Missense_Mutation p.S6314F 0.38 benign(0.131) TCGA-D9-A4Z3-01 2 187608231 187608231 C T FAM171B Missense_Mutation p.S165L 0.31 tolerated(0.21) possibly_damaging(0.542) TCGA-D9-A4Z3-01 2 189871685 189871685 C G COL3A1 Missense_Mutation p.A1075G 0.38 possibly_damaging(0.831) TCGA-D9-A4Z3-01 2 189871689 189871689 C T COL3A1 Silent p.P1076P 0.38 TCGA-D9-A4Z3-01 2 191848400 191848400 G A STAT1 Missense_Mutation p.L472F 0.18 deleterious(0.02) probably_damaging(0.974) TCGA-D9-A4Z3-01 2 191848401 191848401 G A STAT1 Silent p.I471I 0.18 TCGA-D9-A4Z3-01 2 202352604 202352604 C T ALS2CR11 Missense_Mutation p.D1732N 0.34 deleterious(0) probably_damaging(0.974) TCGA-D9-A4Z3-01 2 203762097 203762097 G A WDR12 Missense_Mutation p.S127F 0.30 deleterious(0) probably_damaging(0.954) TCGA-D9-A4Z3-01 2 207170584 207170584 A T ZDBF2 Missense_Mutation p.K444N 0.26 tolerated(0.13) benign(0.007) TCGA-D9-A4Z3-01 2 212248773 212248773 G A ERBB4 Missense_Mutation p.P1165L 0.47 tolerated(0.07) probably_damaging(0.979) TCGA-D9-A4Z3-01 2 212989614 212989614 C T ERBB4 Missense_Mutation p.E33K 0.37 deleterious(0.03) benign(0.023) TCGA-D9-A4Z3-01 2 220315923 220315923 C T SPEG Missense_Mutation p.P727S 0.37 possibly_damaging(0.888) TCGA-D9-A4Z3-01 2 220366636 220366636 C T GMPPA Silent p.I102I 0.36 TCGA-D9-A4Z3-01 2 226447193 226447193 C T NYAP2 Missense_Mutation p.P354S 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 2 227872279 227872279 C T COL4A4 Missense_Mutation p.G1612E 0.39 unknown(0) TCGA-D9-A4Z3-01 2 227958978 227958978 C T COL4A4 Missense_Mutation p.G411E 0.20 probably_damaging(0.993) TCGA-D9-A4Z3-01 2 228883942 228883942 C T SPHKAP Missense_Mutation p.G543E 0.31 tolerated(1) benign(0.002) TCGA-D9-A4Z3-01 2 228883943 228883943 C T SPHKAP Missense_Mutation p.G543R 0.34 tolerated(0.52) benign(0.006) TCGA-D9-A4Z3-01 2 230450605 230450605 C T DNER Silent p.E272E 0.28 TCGA-D9-A4Z3-01 2 232393194 232393194 G A NMUR1 Nonsense_Mutation p.R180* 0.67 TCGA-D9-A4Z3-01 2 240016726 240016726 G A HDAC4 Missense_Mutation p.L749F 0.70 deleterious(0) possibly_damaging(0.69) TCGA-D9-A4Z3-01 2 25384180 25384180 C T POMC Missense_Mutation p.D192N 0.38 deleterious(0.04) benign(0.125) TCGA-D9-A4Z3-01 2 25851216 25851216 G A DTNB Silent p.F62F 0.61 TCGA-D9-A4Z3-01 2 25972930 25972930 G T ASXL2 Missense_Mutation p.Q499K 0.37 tolerated(0.28) benign(0.284) TCGA-D9-A4Z3-01 2 27276294 27276294 G A AGBL5 Silent p.R80R 0.35 TCGA-D9-A4Z3-01 2 33335742 33335742 G A LTBP1 Silent p.G319G 0.39 TCGA-D9-A4Z3-01 2 38800437 38800437 A G HNRNPLL Missense_Mutation p.V331A 0.52 deleterious(0.01) probably_damaging(0.993) TCGA-D9-A4Z3-01 2 44079944 44079944 G A ABCG8 Missense_Mutation p.V301I 0.37 tolerated(0.07) benign(0.242) TCGA-D9-A4Z3-01 2 46234779 46234779 G A PRKCE Silent p.L414L 0.38 TCGA-D9-A4Z3-01 2 46234780 46234780 G A PRKCE Missense_Mutation p.G415S 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 2 54164541 54164541 G A PSME4 Missense_Mutation p.H228Y 0.56 tolerated(0.16) benign(0.162) TCGA-D9-A4Z3-01 2 69093276 69093276 G A BMP10 Silent p.I254I 0.50 TCGA-D9-A4Z3-01 2 71043813 71043813 C T CLEC4F Missense_Mutation p.E234K 0.53 tolerated(0.31) benign(0.155) TCGA-D9-A4Z3-01 2 71576558 71576558 T C ZNF638 Silent p.S158S 0.29 TCGA-D9-A4Z3-01 2 71743363 71743363 C G DYSF Missense_Mutation p.I314M 0.39 deleterious(0) possibly_damaging(0.736) TCGA-D9-A4Z3-01 2 73518837 73518837 G A EGR4 Silent p.I506I 0.33 TCGA-D9-A4Z3-01 2 80773077 80773077 G A CTNNA2 Missense_Mutation p.V477I 0.38 tolerated(0.12) benign(0.002) TCGA-D9-A4Z3-01 2 84658743 84658743 G A SUCLG1 Silent p.D238D 0.46 TCGA-D9-A4Z3-01 2 84658752 84658752 A T SUCLG1 Missense_Mutation p.D235E 0.44 tolerated(0.09) benign(0.152) TCGA-D9-A4Z3-01 2 90044168 90044168 C T IGKV2D-24 Missense_Mutation p.S30F 0.44 tolerated(0.07) benign(0.391) TCGA-D9-A4Z3-01 2 90199028 90199028 G A IGKV1D-12 Silent p.G63G 0.33 TCGA-D9-A4Z3-01 2 98844724 98844724 G C VWA3B Missense_Mutation p.K693N 0.50 deleterious(0) probably_damaging(0.963) TCGA-D9-A4Z3-01 3 10261383 10261383 C T IRAK2 Missense_Mutation p.P308L 0.39 tolerated(0.22) benign(0.013) TCGA-D9-A4Z3-01 3 10280488 10280488 C T IRAK2 Silent p.L510L 0.34 TCGA-D9-A4Z3-01 3 10280489 10280489 C T IRAK2 Missense_Mutation p.P511S 0.33 tolerated(0.23) benign(0.004) TCGA-D9-A4Z3-01 3 108112956 108112956 G A MYH15 Silent p.A1747A 0.49 TCGA-D9-A4Z3-01 3 108127150 108127150 G T MYH15 Missense_Mutation p.Q1553K 0.37 deleterious(0.01) possibly_damaging(0.755) TCGA-D9-A4Z3-01 3 108135721 108135721 C T MYH15 Missense_Mutation p.E1316K 0.33 tolerated(0.24) possibly_damaging(0.856) TCGA-D9-A4Z3-01 3 11300948 11300948 C T HRH1 Silent p.I75I 0.50 TCGA-D9-A4Z3-01 3 115439748 115439748 C T GAP43 3'UTR 0.33 TCGA-D9-A4Z3-01 3 118870159 118870159 C T C3orf30 3'UTR 0.37 TCGA-D9-A4Z3-01 3 121207085 121207085 G A POLQ Nonsense_Mutation p.Q1565* 0.39 TCGA-D9-A4Z3-01 3 121340805 121340805 G A FBXO40 Missense_Mutation p.D177N 0.43 tolerated(0.47) benign(0.001) TCGA-D9-A4Z3-01 3 121712276 121712276 C T ILDR1 Silent p.R440R 0.26 TCGA-D9-A4Z3-01 3 122825641 122825641 G A PDIA5 Missense_Mutation p.E145K 0.32 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 3 122869163 122869163 G A PDIA5 Missense_Mutation p.E409K 0.37 tolerated(0.34) possibly_damaging(0.7) TCGA-D9-A4Z3-01 3 123021960 123021960 C T ADCY5 Missense_Mutation p.S889N 0.35 tolerated(0.07) benign(0.022) TCGA-D9-A4Z3-01 3 126236519 126236519 G A UROC1 Missense_Mutation p.P15L 0.33 tolerated(0.1) probably_damaging(0.994) TCGA-D9-A4Z3-01 3 126268923 126268923 T A C3orf22 Splice_Site p.X72_splice 0.39 TCGA-D9-A4Z3-01 3 127298867 127298867 G A TPRA1 Silent p.S41S 0.35 TCGA-D9-A4Z3-01 3 127396527 127396527 C T ABTB1 Silent p.F290F 0.54 TCGA-D9-A4Z3-01 3 129218751 129218751 C T IFT122 Missense_Mutation p.L790F 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-D9-A4Z3-01 3 132441115 132441115 C T NPHP3 Missense_Mutation p.E29K 0.30 tolerated(0.3) benign(0.023) TCGA-D9-A4Z3-01 3 134089877 134089877 G A AMOTL2 Silent p.P133P 0.38 TCGA-D9-A4Z3-01 3 135870068 135870068 G A MSL2 Missense_Mutation p.P552L 0.40 deleterious(0.01) possibly_damaging(0.494) TCGA-D9-A4Z3-01 3 135870069 135870069 G A MSL2 Missense_Mutation p.P552S 0.39 deleterious(0.01) possibly_damaging(0.723) TCGA-D9-A4Z3-01 3 137786462 137786462 G A DZIP1L Missense_Mutation p.S638F 0.35 tolerated(0.21) benign(0.408) TCGA-D9-A4Z3-01 3 140407044 140407044 C T TRIM42 Missense_Mutation p.P507L 0.34 tolerated(0.06) benign(0.077) TCGA-D9-A4Z3-01 3 14163503 14163503 G A CHCHD4 5'UTR 0.35 TCGA-D9-A4Z3-01 3 142083993 142083993 G A XRN1 Missense_Mutation p.P1097L 0.32 deleterious(0) possibly_damaging(0.764) TCGA-D9-A4Z3-01 3 142141539 142141539 C A XRN1 Missense_Mutation p.L284F 0.44 deleterious(0.03) possibly_damaging(0.562) TCGA-D9-A4Z3-01 3 142217587 142217587 G A ATR Silent p.L1804L 0.43 TCGA-D9-A4Z3-01 3 14535325 14535325 C G SLC6A6 3'Flank 0.56 TCGA-D9-A4Z3-01 3 148905923 148905923 C T CP Missense_Mutation p.E594K 0.44 deleterious(0.05) benign(0.006) TCGA-D9-A4Z3-01 3 16646856 16646856 G A DAZL 5'Flank 0.42 TCGA-D9-A4Z3-01 3 167000049 167000049 A C ZBBX Nonsense_Mutation p.L744* 0.37 TCGA-D9-A4Z3-01 3 167254679 167254679 G C WDR49 Missense_Mutation p.P293A 0.32 tolerated(0.09) probably_damaging(0.964) TCGA-D9-A4Z3-01 3 168838922 168838922 C T MECOM Missense_Mutation p.E229K 0.35 deleterious(0.01) possibly_damaging(0.769) TCGA-D9-A4Z3-01 3 168845663 168845663 C T MECOM Missense_Mutation p.E143K 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A4Z3-01 3 169644384 169644384 G A SAMD7 Missense_Mutation p.E112K 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-D9-A4Z3-01 3 172520438 172520438 C G ECT2 Missense_Mutation p.A647G 0.27 tolerated(1) benign(0.002) TCGA-D9-A4Z3-01 3 186002461 186002461 G A DGKG Silent p.L194L 0.45 TCGA-D9-A4Z3-01 3 186395415 186395415 C T HRG Nonsense_Mutation p.R441* 0.38 TCGA-D9-A4Z3-01 3 186570910 186570910 G A ADIPOQ Silent p.T21T 0.51 TCGA-D9-A4Z3-01 3 189590656 189590656 C T TP63 Silent p.G407G 0.50 TCGA-D9-A4Z3-01 3 194118880 194118880 G A GP5 Silent p.S44S 0.49 TCGA-D9-A4Z3-01 3 194387226 194387226 T C LSG1 Missense_Mutation p.K101R 0.41 tolerated(0.31) benign(0.009) TCGA-D9-A4Z3-01 3 196234890 196234890 G A SMCO1 Silent p.N171N 0.49 TCGA-D9-A4Z3-01 3 35731618 35731618 C T ARPP21 Silent p.F177F 0.26 TCGA-D9-A4Z3-01 3 36874203 36874203 C T TRANK1 Missense_Mutation p.E2247K 0.40 deleterious(0.01) benign(0.24) TCGA-D9-A4Z3-01 3 36874421 36874421 G A TRANK1 Missense_Mutation p.A2174V 0.62 tolerated(0.2) possibly_damaging(0.665) TCGA-D9-A4Z3-01 3 38278380 38278380 A G OXSR1 Silent p.G334G 0.44 TCGA-D9-A4Z3-01 3 38307716 38307716 C T SLC22A13 Missense_Mutation p.S122F 0.36 deleterious(0) benign(0.429) TCGA-D9-A4Z3-01 3 38888431 38888431 C T SCN11A Silent p.K1710K 0.41 TCGA-D9-A4Z3-01 3 44952563 44952563 G A TGM4 Missense_Mutation p.E574K 0.23 deleterious(0.01) benign(0.177) TCGA-D9-A4Z3-01 3 47084151 47084151 G C SETD2 Missense_Mutation p.P2380A 0.24 deleterious(0.02) benign(0.075) TCGA-D9-A4Z3-01 3 47452966 47452966 C G PTPN23 Silent p.V1226V 0.24 TCGA-D9-A4Z3-01 3 48716841 48716841 G A NCKIPSD Silent p.S513S 0.42 TCGA-D9-A4Z3-01 3 49714354 49714354 C T APEH Missense_Mutation p.S299F 0.34 deleterious(0.05) benign(0.083) TCGA-D9-A4Z3-01 3 50229154 50229154 G A GNAT1 5'UTR 0.31 TCGA-D9-A4Z3-01 3 50332308 50332308 G A HYAL3 Silent p.F242F 0.39 TCGA-D9-A4Z3-01 3 52554068 52554068 C T STAB1 Silent p.L1782L 0.39 TCGA-D9-A4Z3-01 3 52940169 52940169 G A SFMBT1 Missense_Mutation p.S807F 0.55 deleterious(0.03) possibly_damaging(0.507) TCGA-D9-A4Z3-01 3 53212432 53212432 C T PRKCD 5'UTR 0.50 TCGA-D9-A4Z3-01 3 54661851 54661851 G A CACNA2D3 Missense_Mutation p.G334E 0.75 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 3 58097893 58097893 C G FLNB Missense_Mutation p.P865A 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A4Z3-01 3 62257194 62257194 G A PTPRG Missense_Mutation p.R1049Q 0.31 tolerated(0.22) benign(0.008) TCGA-D9-A4Z3-01 3 63600983 63600983 G A SYNPR Silent p.Q228Q 0.50 TCGA-D9-A4Z3-01 3 65350557 65350557 G A MAGI1 Silent p.T1087T 0.37 TCGA-D9-A4Z3-01 3 6903560 6903560 C T GRM7 Missense_Mutation p.S162F 0.36 deleterious(0) possibly_damaging(0.9) TCGA-D9-A4Z3-01 3 72891523 72891523 G A SHQ1 Missense_Mutation p.T80I 0.38 tolerated(0.21) benign(0.127) TCGA-D9-A4Z3-01 3 97454834 97454834 C T EPHA6 Silent p.H1000H 0.33 TCGA-D9-A4Z3-01 3 9804684 9804684 C T CAMK1 Missense_Mutation p.E115K 0.20 deleterious(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 3 99569317 99569317 C T FILIP1L Silent p.K401K 0.40 TCGA-D9-A4Z3-01 4 100232746 100232746 G A ADH1B Missense_Mutation p.S299F 0.37 deleterious(0.01) possibly_damaging(0.836) TCGA-D9-A4Z3-01 4 100463150 100463150 C T C4orf17 Missense_Mutation p.P322S 0.37 tolerated(0.17) possibly_damaging(0.527) TCGA-D9-A4Z3-01 4 101344505 101344505 G A EMCN Missense_Mutation p.P158S 0.50 tolerated(1) benign(0.006) TCGA-D9-A4Z3-01 4 103822383 103822383 G A SLC9B1 Missense_Mutation p.T480I 0.11 deleterious(0) probably_damaging(0.987) TCGA-D9-A4Z3-01 4 104640289 104640289 C T TACR3 Missense_Mutation p.D182N 0.56 deleterious(0.02) probably_damaging(0.99) TCGA-D9-A4Z3-01 4 106638778 106638778 C T GSTCD Missense_Mutation p.A3V 0.28 deleterious_low_confidence(0.01) benign(0.178) TCGA-D9-A4Z3-01 4 115997651 115997651 G A NDST4 Missense_Mutation p.P181L 0.41 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z3-01 4 115997652 115997652 G A NDST4 Missense_Mutation p.P181S 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-D9-A4Z3-01 4 119745861 119745861 C T SEC24D Silent p.R54R 0.36 TCGA-D9-A4Z3-01 4 119745862 119745862 C T SEC24D Missense_Mutation p.R54K 0.35 tolerated_low_confidence(0.89) benign(0) TCGA-D9-A4Z3-01 4 122853785 122853785 G A TRPC3 Missense_Mutation p.P210S 0.49 tolerated(0.08) benign(0.128) TCGA-D9-A4Z3-01 4 1244740 1244740 C T CTBP1 5'Flank 0.44 TCGA-D9-A4Z3-01 4 125592806 125592806 A C ANKRD50 Missense_Mutation p.D542E 0.45 tolerated(0.16) possibly_damaging(0.794) TCGA-D9-A4Z3-01 4 125593259 125593259 G A ANKRD50 Silent p.I391I 0.54 TCGA-D9-A4Z3-01 4 126370646 126370646 G A FAT4 Silent p.G2825G 0.39 TCGA-D9-A4Z3-01 4 128861129 128861129 G A MFSD8 Missense_Mutation p.L193F 0.30 deleterious(0) benign(0.367) TCGA-D9-A4Z3-01 4 129924982 129924982 G A SCLT1 Missense_Mutation p.P114S 0.48 deleterious(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 4 140432999 140432999 T C SETD7 Splice_Site p.X307_splice 0.43 TCGA-D9-A4Z3-01 4 141622683 141622683 G A TBC1D9 Silent p.S72S 0.32 TCGA-D9-A4Z3-01 4 141622684 141622684 G A TBC1D9 Missense_Mutation p.S72F 0.29 deleterious(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 4 144361025 144361025 C T GAB1 Silent p.G422G 0.33 TCGA-D9-A4Z3-01 4 153831231 153831231 A G ARFIP1 Missense_Mutation p.N328D 0.40 deleterious(0) benign(0.348) TCGA-D9-A4Z3-01 4 153896837 153896837 G A FHDC1 Silent p.P798P 0.43 TCGA-D9-A4Z3-01 4 166021932 166021932 A C TMEM192 Missense_Mutation p.I96R 0.69 deleterious(0) probably_damaging(0.952) TCGA-D9-A4Z3-01 4 166924574 166924574 G A TLL1 Missense_Mutation p.G222R 0.64 deleterious(0) probably_damaging(0.982) TCGA-D9-A4Z3-01 4 166924575 166924575 G A TLL1 Missense_Mutation p.G222E 0.64 deleterious(0.03) probably_damaging(0.969) TCGA-D9-A4Z3-01 4 166964455 166964455 G A TLL1 Missense_Mutation p.E470K 0.59 tolerated(0.64) benign(0.083) TCGA-D9-A4Z3-01 4 184930856 184930856 C T STOX2 Nonsense_Mutation p.Q289* 0.78 TCGA-D9-A4Z3-01 4 20535232 20535232 G A SLIT2 Missense_Mutation p.G576R 0.31 deleterious(0.02) probably_damaging(1) TCGA-D9-A4Z3-01 4 22415324 22415324 G A GPR125 Silent p.F641F 0.33 TCGA-D9-A4Z3-01 4 42041010 42041010 C T SLC30A9 Missense_Mutation p.S226F 0.37 deleterious(0.04) benign(0.142) TCGA-D9-A4Z3-01 4 47408856 47408856 C T GABRB1 Silent p.F331F 0.33 TCGA-D9-A4Z3-01 4 57333797 57333797 C T SRP72 5'UTR 0.37 TCGA-D9-A4Z3-01 4 57340312 57340312 A G SRP72 Silent p.T149T 0.36 TCGA-D9-A4Z3-01 4 57389908 57389908 G T ARL9 Missense_Mutation p.A80S 0.44 tolerated(0.54) possibly_damaging(0.755) TCGA-D9-A4Z3-01 4 57883231 57883231 G A POLR2B Missense_Mutation p.G660R 0.30 deleterious(0.01) probably_damaging(0.977) TCGA-D9-A4Z3-01 4 57883232 57883232 G A POLR2B Missense_Mutation p.G660E 0.30 deleterious(0) probably_damaging(0.956) TCGA-D9-A4Z3-01 4 69519901 69519901 G A UGT2B15 Silent p.I389I 0.27 TCGA-D9-A4Z3-01 4 70512854 70512854 G A UGT2A1 Missense_Mutation p.S170F 0.33 deleterious(0) probably_damaging(0.985) TCGA-D9-A4Z3-01 4 71396779 71396779 C T AMTN Silent p.I127I 0.40 TCGA-D9-A4Z3-01 4 74453617 74453617 G A RASSF6 Missense_Mutation p.R140C 0.56 tolerated(0.06) possibly_damaging(0.453) TCGA-D9-A4Z3-01 4 74919832 74919832 C T PPBPP2 RNA 0.45 TCGA-D9-A4Z3-01 4 77230887 77230887 C T FAM47E-STBD1 Missense_Mutation p.H271Y 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 4 8007032 8007032 G A ABLIM2 Intron 0.53 TCGA-D9-A4Z3-01 4 80328537 80328537 C T GK2 Missense_Mutation p.G273E 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 4 8221114 8221114 G A SH3TC1 Silent p.E323E 0.42 TCGA-D9-A4Z3-01 4 8229539 8229539 C G SH3TC1 Silent p.L706L 0.35 TCGA-D9-A4Z3-01 4 94137913 94137913 G A GRID2 Missense_Mutation p.E272K 0.43 tolerated(0.15) possibly_damaging(0.843) TCGA-D9-A4Z3-01 4 9943652 9943652 G A SLC2A9 Silent p.Y233Y 0.26 TCGA-D9-A4Z3-01 5 109159485 109159485 T G MAN2A1 Missense_Mutation p.V838G 0.44 deleterious(0) possibly_damaging(0.815) TCGA-D9-A4Z3-01 5 132232751 132232751 G A AFF4 Missense_Mutation p.T524M 0.10 tolerated(0.06) benign(0.367) TCGA-D9-A4Z3-01 5 133496736 133496736 G A SKP1 Missense_Mutation p.P86L 0.50 tolerated(0.21) benign(0.177) TCGA-D9-A4Z3-01 5 134079737 134079737 C T CAMLG Missense_Mutation p.P232S 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A4Z3-01 5 135583173 135583173 G A TRPC7 Silent p.N610N 0.26 TCGA-D9-A4Z3-01 5 13781007 13781007 C T DNAH5 Missense_Mutation p.G2961E 0.44 probably_damaging(0.982) TCGA-D9-A4Z3-01 5 138699534 138699534 A G PAIP2 Missense_Mutation p.N21D 0.50 deleterious(0.05) possibly_damaging(0.636) TCGA-D9-A4Z3-01 5 13870977 13870977 G A DNAH5 Missense_Mutation p.R1245C 0.18 possibly_damaging(0.689) TCGA-D9-A4Z3-01 5 138715763 138715763 G A SLC23A1 Missense_Mutation p.S221F 0.56 deleterious(0) benign(0.046) TCGA-D9-A4Z3-01 5 139193941 139193941 G A PSD2 Silent p.L336L 0.19 TCGA-D9-A4Z3-01 5 140167495 140167495 G A PCDHA1 Silent p.A540A 0.33 TCGA-D9-A4Z3-01 5 140167496 140167496 G A PCDHA1 Missense_Mutation p.G541S 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D9-A4Z3-01 5 140175938 140175938 C T PCDHA2 Silent p.F463F 0.39 TCGA-D9-A4Z3-01 5 140229437 140229437 C T PCDHA9 Missense_Mutation p.P453S 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.53) TCGA-D9-A4Z3-01 5 140262838 140262838 C T PCDHA13 Missense_Mutation p.P329S 0.25 tolerated_low_confidence(0.16) benign(0.158) TCGA-D9-A4Z3-01 5 140537600 140537600 C T PCDHB17 3'UTR 0.40 TCGA-D9-A4Z3-01 5 140552978 140552978 G A PCDHB7 Missense_Mutation p.G188R 0.67 deleterious_low_confidence(0.01) possibly_damaging(0.456) TCGA-D9-A4Z3-01 5 140627314 140627314 G A PCDHB15 Missense_Mutation p.G723D 0.37 deleterious_low_confidence(0.03) benign(0.142) TCGA-D9-A4Z3-01 5 140772512 140772512 C T PCDHGA8 Silent p.F44F 0.22 TCGA-D9-A4Z3-01 5 140803044 140803044 C T PCDHGA11 Silent p.F750F 0.35 TCGA-D9-A4Z3-01 5 140803045 140803045 C T PCDHGA11 Silent p.L751L 0.36 TCGA-D9-A4Z3-01 5 14687733 14687733 C T FAM105B Missense_Mutation p.S191F 0.36 tolerated(0.08) possibly_damaging(0.69) TCGA-D9-A4Z3-01 5 147695277 147695277 G A SPINK7 3'UTR 0.25 TCGA-D9-A4Z3-01 5 147863877 147863877 G A HTR4 Missense_Mutation p.P381L 0.43 tolerated_low_confidence(0.81) benign(0) TCGA-D9-A4Z3-01 5 149439417 149439417 G A CSF1R Silent p.L660L 0.34 TCGA-D9-A4Z3-01 5 150051332 150051332 G A MYOZ3 Missense_Mutation p.G96S 0.33 tolerated(0.09) benign(0.124) TCGA-D9-A4Z3-01 5 153056655 153056655 G A GRIA1 Silent p.G331G 0.45 TCGA-D9-A4Z3-01 5 153190772 153190772 C T GRIA1 Missense_Mutation p.A913V 0.44 tolerated_low_confidence(0.22) benign(0.004) TCGA-D9-A4Z3-01 5 156899411 156899411 G A NIPAL4 Missense_Mutation p.G282R 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 5 160047460 160047460 C T ATP10B Silent p.R770R 0.26 TCGA-D9-A4Z3-01 5 161324256 161324256 T A GABRA1 Missense_Mutation p.V400D 0.08 tolerated(0.21) benign(0.097) TCGA-D9-A4Z3-01 5 168175341 168175341 G A SLIT3 Missense_Mutation p.L746F 0.39 deleterious(0) benign(0.055) TCGA-D9-A4Z3-01 5 168175342 168175342 G A SLIT3 Silent p.A745A 0.39 TCGA-D9-A4Z3-01 5 175740715 175740715 G A SIMC1 Missense_Mutation p.V152I 0.47 tolerated(0.28) benign(0.003) TCGA-D9-A4Z3-01 5 176011635 176011635 C T CDHR2 Missense_Mutation p.P785S 0.20 tolerated(0.46) benign(0.168) TCGA-D9-A4Z3-01 5 176016051 176016051 G A CDHR2 Missense_Mutation p.G959E 0.36 tolerated(0.06) possibly_damaging(0.624) TCGA-D9-A4Z3-01 5 176638665 176638665 G A NSD1 Missense_Mutation p.D1089N 0.39 tolerated_low_confidence(0.09) benign(0.013) TCGA-D9-A4Z3-01 5 176764412 176764412 G C LMAN2 Silent p.R209R 0.35 TCGA-D9-A4Z3-01 5 178413186 178413186 G A GRM6 Missense_Mutation p.P690L 0.36 deleterious(0.01) benign(0.193) TCGA-D9-A4Z3-01 5 23523409 23523409 G A PRDM9 Missense_Mutation p.G298R 0.30 deleterious(0.03) benign(0.081) TCGA-D9-A4Z3-01 5 23523410 23523410 G A PRDM9 Missense_Mutation p.G298E 0.29 deleterious(0) benign(0.041) TCGA-D9-A4Z3-01 5 37396594 37396594 C T WDR70 Silent p.I138I 0.49 TCGA-D9-A4Z3-01 5 38512000 38512000 G A LIFR Missense_Mutation p.P210S 0.45 deleterious(0) possibly_damaging(0.883) TCGA-D9-A4Z3-01 5 39306815 39306815 C T C9 Silent p.L440L 0.31 TCGA-D9-A4Z3-01 5 39342232 39342232 C T C9 Nonsense_Mutation p.W48* 0.33 TCGA-D9-A4Z3-01 5 41201724 41201724 G A C6 Missense_Mutation p.P79L 0.46 deleterious(0) probably_damaging(0.92) TCGA-D9-A4Z3-01 5 43298699 43298699 G A HMGCS1 Silent p.I123I 0.44 TCGA-D9-A4Z3-01 5 54557288 54557288 T C DHX29 Missense_Mutation p.I1290V 0.32 tolerated(0.56) benign(0.016) TCGA-D9-A4Z3-01 5 63256794 63256794 C T HTR1A Silent p.K251K 0.38 TCGA-D9-A4Z3-01 5 64595853 64595853 G A ADAMTS6 Silent p.S443S 0.42 TCGA-D9-A4Z3-01 5 6662995 6662995 C T SRD5A1 Missense_Mutation p.A210V 0.51 deleterious(0) probably_damaging(0.967) TCGA-D9-A4Z3-01 5 6748684 6748684 C T PAPD7 Missense_Mutation p.P273S 0.26 deleterious(0.05) probably_damaging(1) TCGA-D9-A4Z3-01 5 74646089 74646089 C G HMGCR Missense_Mutation p.R224G 0.39 deleterious(0.01) benign(0.293) TCGA-D9-A4Z3-01 5 96443145 96443145 G A LIX1 Silent p.S102S 0.31 TCGA-D9-A4Z3-01 6 107102702 107102702 C T QRSL1 Missense_Mutation p.S316F 0.41 deleterious(0) probably_damaging(0.979) TCGA-D9-A4Z3-01 6 107955796 107955796 C T SOBP Missense_Mutation p.S583F 0.67 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-D9-A4Z3-01 6 109819057 109819057 G A AK9 Missense_Mutation p.P1720S 0.33 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z3-01 6 109819134 109819134 G A AK9 Missense_Mutation p.P1694L 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 6 116756962 116756962 G A DSE Missense_Mutation p.R444K 0.48 tolerated(0.21) benign(0.027) TCGA-D9-A4Z3-01 6 116910104 116910104 G A RWDD1 Missense_Mutation p.E124K 0.28 tolerated(0.08) benign(0.013) TCGA-D9-A4Z3-01 6 121642895 121642895 C T TBC1D32 Silent p.L67L 0.38 TCGA-D9-A4Z3-01 6 131277451 131277451 G C EPB41L2 Missense_Mutation p.L59V 0.33 deleterious(0.03) benign(0) TCGA-D9-A4Z3-01 6 131971257 131971257 G T ENPP3 Missense_Mutation p.C82F 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 6 132891549 132891549 G A TAAR6 Missense_Mutation p.G30E 0.46 deleterious(0.04) possibly_damaging(0.675) TCGA-D9-A4Z3-01 6 133048109 133048109 C T VNN3 Intron 0.50 TCGA-D9-A4Z3-01 6 133048110 133048110 C T VNN3 Intron 0.53 TCGA-D9-A4Z3-01 6 136500161 136500161 C T PDE7B Missense_Mutation p.S277F 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 6 137322615 137322615 C T IL20RA 3'UTR 0.42 TCGA-D9-A4Z3-01 6 146480582 146480582 G A GRM1 Missense_Mutation p.E267K 0.45 deleterious(0.01) possibly_damaging(0.474) TCGA-D9-A4Z3-01 6 148711386 148711386 G A SASH1 Silent p.Q91Q 0.45 TCGA-D9-A4Z3-01 6 148855984 148855984 C T SASH1 Missense_Mutation p.P681L 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A4Z3-01 6 150211183 150211183 G A RAET1E Missense_Mutation p.L62F 0.45 tolerated(0.13) possibly_damaging(0.573) TCGA-D9-A4Z3-01 6 152652229 152652229 C T SYNE1 Missense_Mutation p.E4531K 0.48 probably_damaging(0.997) TCGA-D9-A4Z3-01 6 153042967 153042967 G A MYCT1 Missense_Mutation p.R96K 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-D9-A4Z3-01 6 158509737 158509737 C T SYNJ2 Missense_Mutation p.S1130F 0.39 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-D9-A4Z3-01 6 159687209 159687209 G A FNDC1 Missense_Mutation p.R1793Q 0.41 deleterious(0) probably_damaging(0.992) TCGA-D9-A4Z3-01 6 167787877 167787877 C T TCP10 Missense_Mutation p.E251K 0.09 deleterious(0.03) probably_damaging(0.982) TCGA-D9-A4Z3-01 6 168440834 168440834 C T KIF25 Missense_Mutation p.S195F 0.45 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z3-01 6 168999536 168999536 G A SMOC2 Missense_Mutation p.E237K 0.34 deleterious(0) probably_damaging(0.913) TCGA-D9-A4Z3-01 6 170169683 170169683 A G ERMARD Silent p.R369R 0.40 TCGA-D9-A4Z3-01 6 24718839 24718839 T C C6orf62 Missense_Mutation p.R20G 0.33 deleterious(0.01) possibly_damaging(0.639) TCGA-D9-A4Z3-01 6 29627144 29627144 G A MOG Missense_Mutation p.G46E 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 6 30571389 30571389 C T PPP1R10 Missense_Mutation p.G543S 0.35 tolerated(0.47) benign(0.01) TCGA-D9-A4Z3-01 6 31735178 31735178 G A VWA7 Nonsense_Mutation p.Q584* 0.64 TCGA-D9-A4Z3-01 6 32826288 32826288 C T PSMB9 Intron 0.24 TCGA-D9-A4Z3-01 6 33141173 33141173 G A COL11A2 Silent p.P810P 0.47 TCGA-D9-A4Z3-01 6 34497610 34497610 G A PACSIN1 Silent p.E260E 0.46 TCGA-D9-A4Z3-01 6 35087097 35087097 C T TCP11 Missense_Mutation p.G409D 0.42 deleterious(0.04) possibly_damaging(0.766) TCGA-D9-A4Z3-01 6 36168987 36168987 C T BRPF3 Silent p.I296I 0.42 TCGA-D9-A4Z3-01 6 38997973 38997973 C T DNAH8 Silent p.F4426F 0.41 TCGA-D9-A4Z3-01 6 407524 407524 T C IRF4 Missense_Mutation p.Y428H 0.20 tolerated(0.18) benign(0.126) TCGA-D9-A4Z3-01 6 43304963 43304963 C T ZNF318 Missense_Mutation p.G2258E 0.45 benign(0) TCGA-D9-A4Z3-01 6 44253779 44253779 G A TCTE1 Silent p.F256F 0.35 TCGA-D9-A4Z3-01 6 47658325 47658325 C T GPR111 3'UTR 0.32 TCGA-D9-A4Z3-01 6 47682527 47682527 G A GPR115 Missense_Mutation p.V516I 0.40 deleterious(0) benign(0.186) TCGA-D9-A4Z3-01 6 55216216 55216216 C T GFRAL Missense_Mutation p.P179L 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 6 55223866 55223866 G A GFRAL Silent p.R294R 0.40 TCGA-D9-A4Z3-01 6 55300472 55300472 G A HMGCLL1 Silent p.S367S 0.51 TCGA-D9-A4Z3-01 6 55360397 55360397 C T HMGCLL1 Silent p.K235K 0.45 TCGA-D9-A4Z3-01 6 83667033 83667033 G A UBE3D Nonsense_Mutation p.Q383* 0.34 TCGA-D9-A4Z3-01 6 90428729 90428729 G A MDN1 Silent p.S2026S 0.41 TCGA-D9-A4Z3-01 6 94120310 94120310 C T EPHA7 Silent p.R247R 0.36 TCGA-D9-A4Z3-01 7 100075280 100075280 A G TSC22D4 Silent p.L128L 0.50 TCGA-D9-A4Z3-01 7 100238722 100238722 C T TFR2 Missense_Mutation p.E55K 0.31 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-D9-A4Z3-01 7 100238723 100238723 C T TFR2 Missense_Mutation p.M54I 0.31 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-D9-A4Z3-01 7 100552303 100552303 C T MUC3A Missense_Mutation p.P352S 0.13 deleterious(0.03) possibly_damaging(0.816) TCGA-D9-A4Z3-01 7 100552304 100552304 C T MUC3A Missense_Mutation p.P352L 0.12 deleterious(0) possibly_damaging(0.868) TCGA-D9-A4Z3-01 7 1026358 1026358 G A CYP2W1 Silent p.L248L 0.39 TCGA-D9-A4Z3-01 7 1132424 1132424 G A GPER1 Missense_Mutation p.A354T 0.14 tolerated_low_confidence(0.77) benign(0.012) TCGA-D9-A4Z3-01 7 113520099 113520099 G A PPP1R3A Missense_Mutation p.P350S 0.54 tolerated(0.14) benign(0.027) TCGA-D9-A4Z3-01 7 113520130 113520130 C T PPP1R3A Silent p.R339R 0.24 TCGA-D9-A4Z3-01 7 117007411 117007411 G A ASZ1 Nonsense_Mutation p.Q424* 0.47 TCGA-D9-A4Z3-01 7 121638051 121638051 G A PTPRZ1 Missense_Mutation p.D411N 0.18 tolerated(0.15) benign(0.002) TCGA-D9-A4Z3-01 7 121650545 121650545 C T PTPRZ1 Missense_Mutation p.S482F 0.56 tolerated(0.21) benign(0.372) TCGA-D9-A4Z3-01 7 126173490 126173490 G A GRM8 Missense_Mutation p.S649F 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 7 130025062 130025062 C T CPA1 Missense_Mutation p.S288F 0.49 deleterious(0) probably_damaging(0.988) TCGA-D9-A4Z3-01 7 131849047 131849047 C T PLXNA4 Missense_Mutation p.E1452K 0.46 deleterious(0) possibly_damaging(0.906) TCGA-D9-A4Z3-01 7 132192469 132192469 G A PLXNA4 Silent p.V328V 0.57 TCGA-D9-A4Z3-01 7 138555970 138555970 G A KIAA1549 Missense_Mutation p.P1495L 0.50 deleterious(0.01) probably_damaging(0.962) TCGA-D9-A4Z3-01 7 139726008 139726008 G A PARP12 Missense_Mutation p.S590F 0.29 deleterious(0.05) probably_damaging(0.986) TCGA-D9-A4Z3-01 7 141672477 141672477 C T TAS2R38 3'UTR 0.32 TCGA-D9-A4Z3-01 7 141727420 141727420 G A MGAM Missense_Mutation p.R369Q 0.56 tolerated(0.12) benign(0.278) TCGA-D9-A4Z3-01 7 141766486 141766486 G A MGAM Intron 0.66 TCGA-D9-A4Z3-01 7 141794549 141794549 G A MGAM Silent p.T1552T 0.30 TCGA-D9-A4Z3-01 7 141957578 141957578 G T PRSS58 5'UTR 0.62 TCGA-D9-A4Z3-01 7 142659351 142659351 G A KEL 5'UTR 0.34 TCGA-D9-A4Z3-01 7 142829171 142829171 C T PIP 5'UTR 0.23 TCGA-D9-A4Z3-01 7 147964138 147964138 C T CNTNAP2 Missense_Mutation p.P1132L 0.55 tolerated(0.54) benign(0.062) TCGA-D9-A4Z3-01 7 149500812 149500812 G A SSPO RNA 0.39 TCGA-D9-A4Z3-01 7 150034380 150034380 C T LRRC61 Missense_Mutation p.P144S 0.28 tolerated(0.53) benign(0.006) TCGA-D9-A4Z3-01 7 150034381 150034381 C T LRRC61 Missense_Mutation p.P144L 0.28 deleterious(0.04) benign(0.202) TCGA-D9-A4Z3-01 7 150037535 150037535 G A RARRES2 Missense_Mutation p.A55V 0.23 tolerated(0.18) probably_damaging(1) TCGA-D9-A4Z3-01 7 150839049 150839049 T C AGAP3 Silent p.A623A 0.43 TCGA-D9-A4Z3-01 7 151097258 151097258 G A WDR86 Missense_Mutation p.T78I 0.50 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 7 18875207 18875207 G A HDAC9 Missense_Mutation p.E862K 0.41 deleterious(0) possibly_damaging(0.677) TCGA-D9-A4Z3-01 7 21521639 21521639 C T SP4 Missense_Mutation p.R669C 0.44 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 7 29976244 29976244 C T SCRN1 Missense_Mutation p.G298E 0.37 deleterious(0.02) benign(0.03) TCGA-D9-A4Z3-01 7 30963079 30963079 G A AQP1 Silent p.G215G 0.50 TCGA-D9-A4Z3-01 7 31617569 31617569 G A CCDC129 Missense_Mutation p.E257K 0.33 deleterious(0.03) benign(0.056) TCGA-D9-A4Z3-01 7 33016019 33016019 C A FKBP9 Missense_Mutation p.P204H 0.35 deleterious(0.04) probably_damaging(0.995) TCGA-D9-A4Z3-01 7 4830461 4830461 C T AP5Z1 Missense_Mutation p.T699I 0.36 deleterious(0) benign(0.287) TCGA-D9-A4Z3-01 7 72892164 72892164 G A BAZ1B Missense_Mutation p.R543W 0.39 deleterious(0) probably_damaging(0.975) TCGA-D9-A4Z3-01 7 73020076 73020076 C T MLXIPL Missense_Mutation p.M281I 0.40 tolerated(0.06) benign(0.028) TCGA-D9-A4Z3-01 7 73646307 73646307 G T RFC2 3'UTR 0.40 TCGA-D9-A4Z3-01 7 74114519 74114519 G T GTF2I Intron 0.19 TCGA-D9-A4Z3-01 7 74197916 74197916 C T NCF1 Missense_Mutation p.S208F 0.21 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z3-01 7 74197917 74197917 C T NCF1 Silent p.S208S 0.21 TCGA-D9-A4Z3-01 7 7483232 7483232 C T COL28A1 Missense_Mutation p.G545E 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 7 7483233 7483233 C T COL28A1 Missense_Mutation p.G545R 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 7 82474650 82474650 G A PCLO Silent p.S4661S 0.54 TCGA-D9-A4Z3-01 7 82580232 82580232 C T PCLO Silent p.E3224E 0.25 TCGA-D9-A4Z3-01 7 82784402 82784402 G A PCLO Missense_Mutation p.P519S 0.47 possibly_damaging(0.803) TCGA-D9-A4Z3-01 7 83640353 83640353 A C SEMA3A Missense_Mutation p.V327G 0.13 deleterious(0) possibly_damaging(0.899) TCGA-D9-A4Z3-01 7 86469011 86469011 C T GRM3 Silent p.I727I 0.26 TCGA-D9-A4Z3-01 7 87148690 87148690 C T ABCB1 Missense_Mutation p.G960E 0.21 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 7 87173553 87173553 C T ABCB1 Missense_Mutation p.M701I 0.52 tolerated(0.15) benign(0.002) TCGA-D9-A4Z3-01 7 87196230 87196230 G A ABCB1 Missense_Mutation p.S134L 0.32 tolerated(0.14) possibly_damaging(0.756) TCGA-D9-A4Z3-01 7 92244347 92244347 G A CDK6 3'UTR 0.55 TCGA-D9-A4Z3-01 7 92905594 92905594 C T CCDC132 Silent p.L307L 0.53 TCGA-D9-A4Z3-01 7 98581897 98581897 C T TRRAP Silent p.I3072I 0.39 TCGA-D9-A4Z3-01 7 99654900 99654900 G A ZSCAN21 Missense_Mutation p.E91K 0.72 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z3-01 8 100108571 100108571 C T VPS13B Missense_Mutation p.T108I 0.15 deleterious(0) probably_damaging(0.961) TCGA-D9-A4Z3-01 8 101157299 101157299 T C FBXO43 Missense_Mutation p.K22R 0.36 tolerated_low_confidence(0.27) benign(0.002) TCGA-D9-A4Z3-01 8 104709460 104709460 G C RIMS2 Missense_Mutation p.C108S 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D9-A4Z3-01 8 105361671 105361671 C T DCSTAMP Silent p.F297F 0.27 TCGA-D9-A4Z3-01 8 110455983 110455983 C T PKHD1L1 Missense_Mutation p.T1548I 0.12 tolerated(0.06) benign(0.004) TCGA-D9-A4Z3-01 8 110455984 110455984 C T PKHD1L1 Silent p.T1548T 0.12 TCGA-D9-A4Z3-01 8 110980496 110980496 C T KCNV1 Missense_Mutation p.E442K 0.45 deleterious(0.03) possibly_damaging(0.453) TCGA-D9-A4Z3-01 8 11189031 11189031 C T SLC35G5 Missense_Mutation p.T139I 0.38 tolerated(0.05) probably_damaging(0.999) TCGA-D9-A4Z3-01 8 11189032 11189032 C T SLC35G5 Silent p.T139T 0.39 TCGA-D9-A4Z3-01 8 118832011 118832011 G A EXT1 Silent p.F480F 0.21 TCGA-D9-A4Z3-01 8 12043954 12043954 C T FAM86B1 Missense_Mutation p.D183N 0.11 tolerated(0.16) benign(0.001) TCGA-D9-A4Z3-01 8 125551343 125551343 C T TATDN1 5'Flank 0.49 TCGA-D9-A4Z3-01 8 125551344 125551344 C T TATDN1 5'Flank 0.49 TCGA-D9-A4Z3-01 8 133036883 133036883 C T OC90 Missense_Mutation p.D427N 0.65 tolerated(0.45) benign(0.258) TCGA-D9-A4Z3-01 8 139180229 139180229 G A FAM135B Silent p.P389P 0.16 TCGA-D9-A4Z3-01 8 141542232 141542232 A G AGO2 Missense_Mutation p.S831P 0.24 deleterious(0.01) probably_damaging(0.955) TCGA-D9-A4Z3-01 8 142151402 142151402 C T DENND3 Missense_Mutation p.S121F 0.18 deleterious(0) possibly_damaging(0.908) TCGA-D9-A4Z3-01 8 143559695 143559695 G A BAI1 Missense_Mutation p.R512Q 0.35 deleterious(0.04) possibly_damaging(0.553) TCGA-D9-A4Z3-01 8 145111546 145111546 C T OPLAH Missense_Mutation p.D607N 0.29 tolerated(0.14) benign(0.007) TCGA-D9-A4Z3-01 8 145111547 145111547 C T OPLAH Silent p.G606G 0.29 TCGA-D9-A4Z3-01 8 145641348 145641348 G A SLC39A4 Missense_Mutation p.P107L 0.79 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 8 145724154 145724154 C T PPP1R16A Silent p.V87V 0.09 TCGA-D9-A4Z3-01 8 145724155 145724155 C T PPP1R16A Missense_Mutation p.R88C 0.09 tolerated(0.13) benign(0.179) TCGA-D9-A4Z3-01 8 145735775 145735777 CTC - MFSD3 In_Frame_Del p.L241del 0.13 TCGA-D9-A4Z3-01 8 18793653 18793653 C T PSD3 Splice_Site p.X8_splice 0.43 TCGA-D9-A4Z3-01 8 2020446 2020446 C T MYOM2 Missense_Mutation p.P272L 0.59 tolerated(0.52) benign(0.251) TCGA-D9-A4Z3-01 8 21890725 21890725 G A NPM2 Missense_Mutation p.E119K 0.38 deleterious(0.01) possibly_damaging(0.745) TCGA-D9-A4Z3-01 8 22140610 22140610 C T PIWIL2 Silent p.I163I 0.27 TCGA-D9-A4Z3-01 8 24151620 24151620 C T ADAM28 5'UTR 0.43 TCGA-D9-A4Z3-01 8 24193072 24193072 C T ADAM28 Silent p.F495F 0.38 TCGA-D9-A4Z3-01 8 24253304 24253304 G A ADAMDEC1 Silent p.G145G 0.32 TCGA-D9-A4Z3-01 8 24256516 24256516 C T ADAMDEC1 Silent p.L298L 0.29 TCGA-D9-A4Z3-01 8 27401963 27401963 C T EPHX2 Missense_Mutation p.P531L 0.54 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 8 29023224 29023224 A C KIF13B Silent p.T408T 0.39 TCGA-D9-A4Z3-01 8 30601695 30601695 G A UBXN8 RNA 0.45 TCGA-D9-A4Z3-01 8 3205659 3205659 C T CSMD1 Missense_Mutation p.G1110E 0.56 probably_damaging(1) TCGA-D9-A4Z3-01 8 41577266 41577266 G A ANK1 Silent p.T373T 0.43 TCGA-D9-A4Z3-01 8 42176187 42176187 C T IKBKB Missense_Mutation p.A453V 0.55 deleterious(0.02) benign(0.139) TCGA-D9-A4Z3-01 8 52321401 52321401 G A PXDNL Missense_Mutation p.P928L 0.41 tolerated(0.27) benign(0.008) TCGA-D9-A4Z3-01 8 52321402 52321402 G A PXDNL Missense_Mutation p.P928S 0.42 tolerated(0.77) benign(0.006) TCGA-D9-A4Z3-01 8 53092783 53092783 A T ST18 Missense_Mutation p.M59K 0.30 deleterious(0) probably_damaging(0.943) TCGA-D9-A4Z3-01 8 53092785 53092785 T C ST18 Silent p.L58L 0.29 TCGA-D9-A4Z3-01 8 55372442 55372442 C T SOX17 Missense_Mutation p.P378S 0.24 tolerated(0.37) probably_damaging(0.992) TCGA-D9-A4Z3-01 8 55541048 55541048 C A RP1 Missense_Mutation p.P1536T 0.30 deleterious(0.04) benign(0.4) TCGA-D9-A4Z3-01 8 57079568 57079568 T C PLAG1 Missense_Mutation p.E246G 0.22 deleterious(0) probably_damaging(0.932) TCGA-D9-A4Z3-01 8 62415997 62415997 G A ASPH Missense_Mutation p.S733F 0.28 deleterious(0) probably_damaging(0.926) TCGA-D9-A4Z3-01 8 67062008 67062008 C T TRIM55 Silent p.V244V 0.17 TCGA-D9-A4Z3-01 8 67062009 67062009 C T TRIM55 Missense_Mutation p.R245C 0.17 deleterious(0) probably_damaging(0.985) TCGA-D9-A4Z3-01 8 69351797 69351797 C T C8orf34 Missense_Mutation p.L131F 0.37 deleterious(0.05) probably_damaging(1) TCGA-D9-A4Z3-01 8 73848172 73848172 C T KCNB2 Silent p.I194I 0.28 TCGA-D9-A4Z3-01 8 76463718 76463718 C T HNF4G Missense_Mutation p.R150W 0.17 tolerated(0.12) benign(0.142) TCGA-D9-A4Z3-01 8 86354322 86354322 C T CA3 Missense_Mutation p.P85S 0.35 tolerated(0.82) benign(0.001) TCGA-D9-A4Z3-01 8 95869013 95869013 C T INTS8 Silent p.S587S 0.30 TCGA-D9-A4Z3-01 8 95869014 95869014 C T INTS8 Missense_Mutation p.H588Y 0.31 tolerated(0.24) possibly_damaging(0.628) TCGA-D9-A4Z3-01 9 113231323 113231323 C T SVEP1 Silent p.R1019R 0.50 TCGA-D9-A4Z3-01 9 116356774 116356774 C T RGS3 Missense_Mutation p.P1049S 0.57 tolerated(0.1) benign(0.18) TCGA-D9-A4Z3-01 9 116356775 116356775 C T RGS3 Missense_Mutation p.P1049L 0.57 deleterious(0.02) benign(0.434) TCGA-D9-A4Z3-01 9 122075525 122075525 C T BRINP1 Missense_Mutation p.E37K 0.81 tolerated_low_confidence(0.11) benign(0.004) TCGA-D9-A4Z3-01 9 125288701 125288701 C G OR1N1 Missense_Mutation p.R291T 0.73 deleterious(0) possibly_damaging(0.82) TCGA-D9-A4Z3-01 9 134340309 134340309 C T PRRC2B Silent p.L522L 0.80 TCGA-D9-A4Z3-01 9 136282787 136282787 G C REXO4 Missense_Mutation p.P60A 0.66 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z3-01 9 16436876 16436876 C T BNC2 Missense_Mutation p.G439E 0.69 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z3-01 9 21141283 21141283 G T IFNW1 Missense_Mutation p.S96Y 0.68 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z3-01 9 21201924 21201924 G A IFNA7 Missense_Mutation p.H81Y 0.60 deleterious(0.05) possibly_damaging(0.622) TCGA-D9-A4Z3-01 9 27202969 27202969 G A TEK Silent p.V687V 0.60 TCGA-D9-A4Z3-01 9 27202972 27202972 G A TEK Silent p.K688K 0.61 TCGA-D9-A4Z3-01 9 27949488 27949488 C T LINGO2 Silent p.K394K 0.31 TCGA-D9-A4Z3-01 9 32633017 32633017 G A TAF1L Missense_Mutation p.P854L 0.32 deleterious(0.01) possibly_damaging(0.599) TCGA-D9-A4Z3-01 9 32633018 32633018 G A TAF1L Missense_Mutation p.P854S 0.32 deleterious(0) probably_damaging(0.949) TCGA-D9-A4Z3-01 9 37746482 37746482 G A FRMPD1 Missense_Mutation p.E1485K 0.74 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A4Z3-01 9 78947495 78947495 G A PCSK5 Missense_Mutation p.G1546R 1.00 deleterious(0.02) possibly_damaging(0.903) TCGA-D9-A4Z3-01 9 79966256 79966256 C T VPS13A Missense_Mutation p.S2438F 0.66 tolerated(0.61) benign(0.014) TCGA-D9-A4Z3-01 9 85640715 85640715 C T RASEF Missense_Mutation p.E185K 0.77 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z3-01 9 90301555 90301555 G A DAPK1 Missense_Mutation p.G772R 0.75 tolerated(0.17) possibly_damaging(0.542) TCGA-D9-A4Z3-01 9 95163468 95163468 C T OGN Splice_Site p.X59_splice 0.79 TCGA-D9-A4Z3-01 9 96030984 96030984 C T WNK2 Missense_Mutation p.S1330L 0.70 unknown(0) TCGA-D9-A4Z3-01 9 99521617 99521617 G A ZNF510 Nonsense_Mutation p.Q499* 0.71 TCGA-D9-A4Z3-01 X 110654100 110654100 C T DCX Missense_Mutation p.E35K 0.62 deleterious_low_confidence(0) unknown(0) TCGA-D9-A4Z3-01 X 127185140 127185140 G A ACTRT1 Missense_Mutation p.S349F 0.72 deleterious(0) probably_damaging(0.951) TCGA-D9-A4Z3-01 X 128724282 128724282 C T OCRL 3'UTR 0.75 TCGA-D9-A4Z3-01 X 12938612 12938612 G A TLR8 Missense_Mutation p.A485T 0.43 tolerated(0.94) benign(0.098) TCGA-D9-A4Z3-01 X 134709067 134709067 A G DDX26B Silent p.T563T 0.76 TCGA-D9-A4Z3-01 X 135429310 135429310 C T GPR112 Missense_Mutation p.P1149S 0.74 tolerated(0.79) benign(0.006) TCGA-D9-A4Z3-01 X 138684595 138684595 C T MCF2 Nonsense_Mutation p.W678* 0.71 TCGA-D9-A4Z3-01 X 1428498 1428498 G A CSF2RA 3'UTR 0.42 TCGA-D9-A4Z3-01 X 148797546 148797546 G A MAGEA11 Missense_Mutation p.G134S 0.64 tolerated(0.09) benign(0.078) TCGA-D9-A4Z3-01 X 148797547 148797547 G A MAGEA11 Missense_Mutation p.G134D 0.67 tolerated(0.12) possibly_damaging(0.587) TCGA-D9-A4Z3-01 X 150348569 150348569 G A GPR50 Missense_Mutation p.D172N 0.73 deleterious(0.02) possibly_damaging(0.628) TCGA-D9-A4Z3-01 X 151303797 151303797 G A MAGEA10 Missense_Mutation p.S99F 0.73 deleterious(0) benign(0.275) TCGA-D9-A4Z3-01 X 151806644 151806644 G A GABRQ 5'UTR 0.60 TCGA-D9-A4Z3-01 X 151935998 151935998 C T MAGEA3 Missense_Mutation p.E57K 0.36 tolerated(0.13) benign(0.426) TCGA-D9-A4Z3-01 X 152807185 152807185 C T ATP2B3 Silent p.I155I 0.65 TCGA-D9-A4Z3-01 X 15371246 15371246 T G FIGF Missense_Mutation p.D229A 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A4Z3-01 X 16627740 16627740 G A CTPS2 Missense_Mutation p.P539S 0.38 deleterious(0.03) probably_damaging(0.962) TCGA-D9-A4Z3-01 X 2867709 2867709 G A ARSE Missense_Mutation p.H164Y 0.30 deleterious(0) benign(0.409) TCGA-D9-A4Z3-01 X 30255090 30255090 G A MAGEB3 3'UTR 0.38 TCGA-D9-A4Z3-01 X 3238619 3238619 C T MXRA5 Missense_Mutation p.G1703R 0.39 deleterious(0) probably_damaging(0.94) TCGA-D9-A4Z3-01 X 3238685 3238685 G A MXRA5 Missense_Mutation p.P1681S 0.36 tolerated(0.12) possibly_damaging(0.712) TCGA-D9-A4Z3-01 X 3239744 3239744 C T MXRA5 Missense_Mutation p.D1328N 0.44 tolerated(0.99) benign(0.003) TCGA-D9-A4Z3-01 X 34149740 34149740 G A FAM47A Missense_Mutation p.P219L 0.44 tolerated(0.7) benign(0.002) TCGA-D9-A4Z3-01 X 34961028 34961028 C T FAM47B Missense_Mutation p.S27F 0.38 deleterious(0) benign(0.245) TCGA-D9-A4Z3-01 X 34962098 34962098 G A FAM47B Missense_Mutation p.E384K 0.46 tolerated(0.15) possibly_damaging(0.766) TCGA-D9-A4Z3-01 X 36162702 36162702 G A CHDC2 Missense_Mutation p.E429K 0.45 deleterious_low_confidence(0.03) benign(0.008) TCGA-D9-A4Z3-01 X 47272283 47272283 G A ZNF157 Missense_Mutation p.E271K 0.35 deleterious(0.01) possibly_damaging(0.788) TCGA-D9-A4Z3-01 X 48759695 48759695 G A PQBP1 Missense_Mutation p.D160N 0.43 tolerated(0.42) benign(0.043) TCGA-D9-A4Z3-01 X 49958028 49958028 G A AKAP4 Silent p.L446L 0.37 TCGA-D9-A4Z3-01 X 50089806 50089806 G A CCNB3 Silent p.R1270R 0.33 TCGA-D9-A4Z3-01 X 73063723 73063723 G A XIST RNA 0.56 TCGA-D9-A4Z3-01 X 73063725 73063725 G A XIST RNA 0.56 TCGA-D9-A4Z3-01 X 73065184 73065184 G A XIST RNA 0.68 TCGA-D9-A4Z3-01 X 73812150 73812150 G A RLIM Missense_Mutation p.R334W 0.74 tolerated(0.07) unknown(0) TCGA-D9-A4Z5-01 10 48426603 48426603 G T GDF10 Silent p.P468P 0.05 TCGA-D9-A4Z5-01 11 134244581 134244581 C A GLB1L2 Missense_Mutation p.P598Q 0.09 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 11 18110965 18110965 G T SAAL1 Missense_Mutation p.Q228K 0.32 tolerated(0.13) benign(0.067) TCGA-D9-A4Z5-01 11 4967967 4967967 A G OR51A4 Missense_Mutation p.F122L 0.15 tolerated(0.09) benign(0.06) TCGA-D9-A4Z5-01 11 66359169 66359169 C T CCDC87 Missense_Mutation p.V440M 0.38 deleterious(0.04) possibly_damaging(0.851) TCGA-D9-A4Z5-01 12 70956768 70956768 C A PTPRB Missense_Mutation p.G1342W 0.18 deleterious(0.01) possibly_damaging(0.649) TCGA-D9-A4Z5-01 13 101258661 101258661 G A TMTC4 Silent p.L695L 0.53 TCGA-D9-A4Z5-01 13 110817227 110817227 C T COL4A1 Missense_Mutation p.G1378S 0.29 probably_damaging(0.998) TCGA-D9-A4Z5-01 14 102963969 102963969 G C TECPR2 Missense_Mutation p.D1332H 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-D9-A4Z5-01 14 25043609 25043609 C T CTSG Missense_Mutation p.G146S 0.16 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z5-01 14 92471090 92471090 G A TRIP11 Missense_Mutation p.S1077L 0.18 tolerated(0.07) benign(0.104) TCGA-D9-A4Z5-01 14 92471136 92471136 G T TRIP11 Missense_Mutation p.Q1062K 0.15 tolerated(0.16) benign(0.384) TCGA-D9-A4Z5-01 14 92471145 92471145 G C TRIP11 Missense_Mutation p.Q1059E 0.17 deleterious(0.01) benign(0.068) TCGA-D9-A4Z5-01 14 92472033 92472033 G A TRIP11 Missense_Mutation p.H763Y 0.20 deleterious(0.01) benign(0.164) TCGA-D9-A4Z5-01 15 78211484 78211484 C T RP11-114H24.7 Intron 0.55 TCGA-D9-A4Z5-01 16 10770001 10770001 C T TEKT5 Missense_Mutation p.D301N 0.17 tolerated(0.29) benign(0.013) TCGA-D9-A4Z5-01 16 20335488 20335488 G T GP2 Missense_Mutation p.P62H 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 16 21221024 21221024 C T ZP2 Silent p.P86P 0.43 TCGA-D9-A4Z5-01 17 10358370 10358370 C T MYH4 Missense_Mutation p.G775R 0.91 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 17 61607554 61607554 C T KCNH6 Missense_Mutation p.A137V 0.10 tolerated(0.23) possibly_damaging(0.829) TCGA-D9-A4Z5-01 19 11233960 11233960 C A LDLR Silent p.R751R 0.13 TCGA-D9-A4Z5-01 19 22785310 22785310 A G AC011467.1 5'Flank 0.64 TCGA-D9-A4Z5-01 19 38993211 38993211 C T RYR1 Missense_Mutation p.P2560L 0.61 benign(0.003) TCGA-D9-A4Z5-01 19 39877178 39877178 G A PAF1 Missense_Mutation p.P376L 0.29 deleterious(0.02) benign(0.003) TCGA-D9-A4Z5-01 19 40368357 40368357 C T FCGBP Missense_Mutation p.A4331T 0.10 possibly_damaging(0.545) TCGA-D9-A4Z5-01 19 41700534 41700534 G T CYP2S1 Missense_Mutation p.R88L 0.31 deleterious(0) possibly_damaging(0.531) TCGA-D9-A4Z5-01 19 44933207 44933207 C T ZNF229 Silent p.R583R 0.61 TCGA-D9-A4Z5-01 19 46124878 46124878 G C EML2 Missense_Mutation p.Q488E 0.68 tolerated(0.08) benign(0.016) TCGA-D9-A4Z5-01 19 51165171 51165171 C G SHANK1 3'UTR 0.53 TCGA-D9-A4Z5-01 19 55106687 55106687 G A LILRA1 Missense_Mutation p.E161K 0.59 tolerated(0.1) possibly_damaging(0.491) TCGA-D9-A4Z5-01 19 55889022 55889022 C A TMEM190 Silent p.P52P 0.16 TCGA-D9-A4Z5-01 19 8152717 8152717 A C FBN3 Missense_Mutation p.M2204R 0.74 tolerated(0.1) possibly_damaging(0.744) TCGA-D9-A4Z5-01 19 9067767 9067767 G A MUC16 Missense_Mutation p.A6560V 0.15 unknown(0) TCGA-D9-A4Z5-01 1 109716420 109716420 G A KIAA1324 Missense_Mutation p.E305K 0.15 deleterious(0.04) benign(0.356) TCGA-D9-A4Z5-01 1 152286355 152286355 G C FLG Missense_Mutation p.P336R 0.16 benign(0.168) TCGA-D9-A4Z5-01 1 156756826 156756826 G C PRCC Missense_Mutation p.D315H 0.08 tolerated(0.07) probably_damaging(0.942) TCGA-D9-A4Z5-01 1 159410193 159410193 G T OR10J1 Silent p.L215L 0.13 TCGA-D9-A4Z5-01 1 161681733 161681733 C T FCRLA Missense_Mutation p.P193L 0.52 deleterious(0.02) possibly_damaging(0.904) TCGA-D9-A4Z5-01 1 16809824 16809824 C T CROCCP3 RNA 0.25 TCGA-D9-A4Z5-01 1 173551109 173551109 C A SLC9C2 Nonsense_Mutation p.G227* 0.29 TCGA-D9-A4Z5-01 1 179078493 179078493 C - ABL2 Frame_Shift_Del p.E637Kfs*21 0.35 TCGA-D9-A4Z5-01 1 19612766 19612766 G A AKR7A3 Silent p.P105P 0.38 TCGA-D9-A4Z5-01 1 22922632 22922632 G T EPHA8 Silent p.S577S 0.35 TCGA-D9-A4Z5-01 1 242161837 242161837 G A MAP1LC3C Missense_Mutation p.T67I 0.36 deleterious(0.01) benign(0.111) TCGA-D9-A4Z5-01 1 37271732 37271732 T A GRIK3 Nonsense_Mutation p.K763* 0.15 TCGA-D9-A4Z5-01 20 13830156 13830156 A - SEL1L2 Frame_Shift_Del p.L568Cfs*29 0.43 TCGA-D9-A4Z5-01 21 45742035 45742035 A G PFKL Missense_Mutation p.H453R 0.58 tolerated(0.52) benign(0.029) TCGA-D9-A4Z5-01 21 45815342 45815342 C A TRPM2 Missense_Mutation p.H614N 0.16 tolerated(0.49) benign(0.045) TCGA-D9-A4Z5-01 22 38471101 38471101 G T PICK1 Missense_Mutation p.G404W 0.21 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-D9-A4Z5-01 22 38823055 38823055 C A KCNJ4 Silent p.L361L 0.08 TCGA-D9-A4Z5-01 2 121107068 121107068 G A INHBB Missense_Mutation p.R281Q 0.31 deleterious(0.02) benign(0.11) TCGA-D9-A4Z5-01 2 179615995 179615995 G A TTN Intron 0.25 TCGA-D9-A4Z5-01 2 27247084 27247084 C T MAPRE3 Missense_Mutation p.R130W 0.45 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z5-01 2 62054287 62054287 T C FAM161A Missense_Mutation p.E653G 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-D9-A4Z5-01 2 74710628 74710628 C T TTC31 Intron 0.46 TCGA-D9-A4Z5-01 2 97217113 97217113 G A ARID5A Missense_Mutation p.G283E 0.14 tolerated(0.05) possibly_damaging(0.873) TCGA-D9-A4Z5-01 3 10960063 10960063 G T SLC6A11 Missense_Mutation p.G349W 0.59 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 3 111312564 111312564 C A ZBED2 Missense_Mutation p.R162M 0.24 deleterious(0.02) probably_damaging(0.936) TCGA-D9-A4Z5-01 3 122432362 122432362 G A PARP14 Silent p.T1237T 0.92 TCGA-D9-A4Z5-01 3 53787666 53787666 T C CACNA1D Missense_Mutation p.F1268S 0.83 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z5-01 3 97806804 97806804 G A OR5AC2 Missense_Mutation p.R263H 0.94 tolerated(0.3) benign(0.051) TCGA-D9-A4Z5-01 4 186180144 186180144 G T SNX25 Silent p.V55V 0.08 TCGA-D9-A4Z5-01 5 180338480 180338480 G T BTNL8 Missense_Mutation p.R180M 0.19 deleterious(0.01) possibly_damaging(0.592) TCGA-D9-A4Z5-01 6 100062529 100062529 C T PRDM13 Missense_Mutation p.P673L 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-D9-A4Z5-01 6 142396893 142396893 G T NMBR Silent p.L355L 0.05 TCGA-D9-A4Z5-01 6 160977073 160977073 C T LPA Missense_Mutation p.E1653K 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-D9-A4Z5-01 6 160977080 160977080 C T LPA Silent p.R1650R 0.30 TCGA-D9-A4Z5-01 6 27835346 27835346 C G HIST1H1B 5'UTR 0.20 TCGA-D9-A4Z5-01 6 31474904 31474904 G A MICB Missense_Mutation p.R240H 0.40 tolerated(0.53) probably_damaging(0.995) TCGA-D9-A4Z5-01 6 31606981 31606981 C T BAG6 Missense_Mutation p.R1109Q 0.42 tolerated(0.05) benign(0.003) TCGA-D9-A4Z5-01 6 34511922 34511922 C T SPDEF Missense_Mutation p.S104N 0.47 tolerated(0.16) benign(0.149) TCGA-D9-A4Z5-01 6 91226241 91226241 C G MAP3K7 Missense_Mutation p.Q600H 0.32 tolerated(0.06) probably_damaging(0.969) TCGA-D9-A4Z5-01 6 91226264 91226264 C T MAP3K7 Missense_Mutation p.E593K 0.28 deleterious(0.04) benign(0.069) TCGA-D9-A4Z5-01 6 91226396 91226396 C T MAP3K7 Missense_Mutation p.E549K 0.38 tolerated(0.08) possibly_damaging(0.767) TCGA-D9-A4Z5-01 7 100385659 100385659 C T ZAN Silent p.R2375R 0.15 TCGA-D9-A4Z5-01 7 140453987 140453987 T G BRAF Missense_Mutation p.N581H 0.48 deleterious(0) probably_damaging(0.982) TCGA-D9-A4Z5-01 7 149479267 149479267 C G SSPO Intron 0.38 TCGA-D9-A4Z5-01 7 16640497 16640497 C A ANKMY2 Missense_Mutation p.K405N 0.07 tolerated_low_confidence(0.07) benign(0.009) TCGA-D9-A4Z5-01 7 2962795 2962795 C A CARD11 Missense_Mutation p.G705C 0.07 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 7 77885617 77885617 G T MAGI2 Silent p.R564R 0.14 TCGA-D9-A4Z5-01 7 92761033 92761033 C A SAMD9L Nonsense_Mutation p.G1418* 0.10 TCGA-D9-A4Z5-01 8 10755649 10755649 G T XKR6 Missense_Mutation p.P580Q 0.12 tolerated(0.09) probably_damaging(0.988) TCGA-D9-A4Z5-01 8 141595255 141595255 C T AGO2 Missense_Mutation p.D60N 0.10 tolerated(0.22) benign(0.005) TCGA-D9-A4Z5-01 8 24259555 24259555 G T ADAMDEC1 Missense_Mutation p.G424W 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A4Z5-01 8 55534084 55534084 C A RP1 Missense_Mutation p.H186Q 0.29 deleterious(0) possibly_damaging(0.644) TCGA-D9-A4Z5-01 9 108467983 108467983 C A TMEM38B Missense_Mutation p.P73Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-D9-A4Z5-01 9 125512476 125512476 C T OR1L6 Missense_Mutation p.A117V 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-D9-A4Z5-01 9 8526635 8526635 G T PTPRD Missense_Mutation p.P187Q 0.15 tolerated(0.24) probably_damaging(0.968) TCGA-D9-A4Z5-01 9 97356004 97356004 G A FBP2 Missense_Mutation p.T2M 0.06 deleterious(0) benign(0.178) TCGA-D9-A4Z5-01 X 15584429 15584429 T A ACE2 Silent p.A687A 0.91 TCGA-D9-A4Z6-06 10 118320038 118320038 T G PNLIP Splice_Site p.X390_splice 0.67 TCGA-D9-A4Z6-06 10 120832525 120832525 G A EIF3A Missense_Mutation p.R140C 0.57 deleterious(0) unknown(0) TCGA-D9-A4Z6-06 10 24817049 24817049 G A KIAA1217 Splice_Site p.X1028_splice 0.09 TCGA-D9-A4Z6-06 10 75634285 75634285 G A CAMK2G 5'UTR 0.80 TCGA-D9-A4Z6-06 11 113146050 113146050 G A NCAM1 Missense_Mutation p.E889K 0.37 deleterious(0) possibly_damaging(0.535) TCGA-D9-A4Z6-06 11 117351205 117351205 C T DSCAML1 Missense_Mutation p.G973E 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A4Z6-06 11 121970470 121970470 G A MIR125B1 RNA 0.32 TCGA-D9-A4Z6-06 11 123676339 123676339 G A OR6M1 Missense_Mutation p.S240F 0.27 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z6-06 11 2432922 2432922 G A TRPM5 Silent p.I850I 0.72 TCGA-D9-A4Z6-06 11 36518747 36518747 G A TRAF6 Missense_Mutation p.H173Y 0.54 tolerated(1) benign(0.067) TCGA-D9-A4Z6-06 11 51411609 51411609 G A OR4A5 Missense_Mutation p.P263S 0.19 tolerated_low_confidence(0.15) benign(0.19) TCGA-D9-A4Z6-06 11 60531279 60531279 C T MS4A15 Missense_Mutation p.P25S 0.45 tolerated(0.28) benign(0.219) TCGA-D9-A4Z6-06 11 60531280 60531280 C T MS4A15 Missense_Mutation p.P25L 0.43 tolerated(0.06) benign(0.142) TCGA-D9-A4Z6-06 11 66359343 66359343 G A CCDC87 Silent p.L382L 0.40 TCGA-D9-A4Z6-06 11 6898580 6898580 G C OR10A4 Silent p.G234G 0.66 TCGA-D9-A4Z6-06 11 75154313 75154313 G A GDPD5 Silent p.F272F 0.41 TCGA-D9-A4Z6-06 11 85436411 85436411 A G SYTL2 Silent p.D363D 0.42 TCGA-D9-A4Z6-06 11 8704256 8704256 G A RPL27A 5'UTR 0.83 TCGA-D9-A4Z6-06 12 104033936 104033936 C T STAB2 Silent p.F314F 0.44 TCGA-D9-A4Z6-06 12 108035942 108035942 C T BTBD11 Silent p.I972I 0.45 TCGA-D9-A4Z6-06 12 109690823 109690823 C T ACACB Silent p.L1969L 0.39 TCGA-D9-A4Z6-06 12 113357227 113357227 G A OAS1 Intron 0.38 TCGA-D9-A4Z6-06 12 122292672 122292672 G A HPD Silent p.I117I 0.33 TCGA-D9-A4Z6-06 12 123187584 123187584 G A HCAR2 Silent p.L83L 0.31 TCGA-D9-A4Z6-06 12 125834785 125834785 G A TMEM132B Silent p.E280E 0.38 TCGA-D9-A4Z6-06 12 13769570 13769570 A G GRIN2B Missense_Mutation p.S383P 0.33 tolerated(0.14) benign(0.051) TCGA-D9-A4Z6-06 12 34175371 34175371 C T ALG10 5'UTR 0.52 TCGA-D9-A4Z6-06 12 49251968 49251968 G A RND1 Silent p.F170F 0.33 TCGA-D9-A4Z6-06 12 53189313 53189313 C T KRT3 Missense_Mutation p.E172K 0.41 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z6-06 12 56965488 56965488 G A RBMS2 Missense_Mutation p.E131K 0.55 deleterious(0.01) benign(0.256) TCGA-D9-A4Z6-06 12 6061031 6061031 G A VWF Missense_Mutation p.P2712S 0.24 tolerated(0.17) possibly_damaging(0.857) TCGA-D9-A4Z6-06 12 6925137 6925137 C T CD4 Intron 0.31 TCGA-D9-A4Z6-06 12 70964892 70964892 G A PTPRB Missense_Mutation p.S1095F 0.36 deleterious(0) probably_damaging(0.952) TCGA-D9-A4Z6-06 12 70981045 70981045 G A PTPRB Missense_Mutation p.P685S 0.57 deleterious(0) probably_damaging(0.94) TCGA-D9-A4Z6-06 12 7586024 7586024 C T CD163L1 Missense_Mutation p.E131K 0.31 tolerated(0.78) benign(0.003) TCGA-D9-A4Z6-06 12 79813057 79813057 C T SYT1 Intron 0.42 TCGA-D9-A4Z6-06 12 81101802 81101802 G A MYF6 Missense_Mutation p.E102K 0.37 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z6-06 12 81112815 81112815 C T MYF5 Silent p.I251I 0.38 TCGA-D9-A4Z6-06 12 8926386 8926386 C T RIMKLB 3'UTR 0.39 TCGA-D9-A4Z6-06 12 9310436 9310436 C T PZP Missense_Mutation p.G1099E 0.45 deleterious(0) probably_damaging(0.99) TCGA-D9-A4Z6-06 12 99640534 99640534 G A ANKS1B Missense_Mutation p.P622L 0.37 tolerated(0.08) benign(0.028) TCGA-D9-A4Z6-06 13 103703679 103703679 C T SLC10A2 Missense_Mutation p.G230E 0.37 deleterious(0) possibly_damaging(0.642) TCGA-D9-A4Z6-06 13 103718289 103718289 C T SLC10A2 Missense_Mutation p.G104E 0.47 deleterious(0) probably_damaging(0.991) TCGA-D9-A4Z6-06 13 110839568 110839568 G A COL4A1 Missense_Mutation p.P549S 0.45 benign(0.001) TCGA-D9-A4Z6-06 13 20010427 20010427 C T TPTE2 Missense_Mutation p.G352E 0.36 deleterious(0) probably_damaging(0.995) TCGA-D9-A4Z6-06 13 78177213 78177213 G A SCEL Missense_Mutation p.S347N 0.52 tolerated(0.24) benign(0.124) TCGA-D9-A4Z6-06 13 95727797 95727797 G A ABCC4 Missense_Mutation p.P899S 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A4Z6-06 14 103593823 103593823 C G TNFAIP2 Missense_Mutation p.F239L 0.55 deleterious(0.02) possibly_damaging(0.676) TCGA-D9-A4Z6-06 14 106204124 106204124 C T IGHG1 Missense_Mutation p.R392K 0.48 tolerated(0.32) benign(0.049) TCGA-D9-A4Z6-06 14 106691936 106691936 G A IGHV3-21 Silent p.L30L 0.40 TCGA-D9-A4Z6-06 14 23072966 23072966 C T ABHD4 Nonsense_Mutation p.R208* 0.49 TCGA-D9-A4Z6-06 14 23416839 23416839 G A HAUS4 Silent p.V270V 0.53 TCGA-D9-A4Z6-06 14 36155840 36155840 G C RALGAPA1 Missense_Mutation p.P823A 0.70 tolerated(0.11) benign(0.068) TCGA-D9-A4Z6-06 14 36155855 36155855 T G RALGAPA1 Missense_Mutation p.S818R 0.80 tolerated(0.14) benign(0.446) TCGA-D9-A4Z6-06 14 63174784 63174784 C T KCNH5 Missense_Mutation p.M803I 0.36 tolerated_low_confidence(0.19) benign(0) TCGA-D9-A4Z6-06 15 22368573 22368573 G A OR4M2 5'UTR 0.17 TCGA-D9-A4Z6-06 15 28483301 28483301 G A HERC2 Missense_Mutation p.R1271W 0.35 possibly_damaging(0.536) TCGA-D9-A4Z6-06 15 34628623 34628623 C T SLC12A6 Missense_Mutation p.D87N 0.54 tolerated(0.28) benign(0.002) TCGA-D9-A4Z6-06 15 40585785 40585785 C T PLCB2 Silent p.K734K 0.41 TCGA-D9-A4Z6-06 15 41272544 41272544 G A INO80 Silent p.S1516S 0.36 TCGA-D9-A4Z6-06 15 42434089 42434089 C T PLA2G4F 3'UTR 0.33 TCGA-D9-A4Z6-06 15 43748789 43748789 G A TP53BP1 Missense_Mutation p.P673S 0.33 deleterious(0.01) probably_damaging(1) TCGA-D9-A4Z6-06 15 58467155 58467155 G A AQP9 Missense_Mutation p.V139M 0.45 tolerated(0.05) benign(0.16) TCGA-D9-A4Z6-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.46 tolerated(0.08) probably_damaging(0.913) TCGA-D9-A4Z6-06 15 75688769 75688769 G A SIN3A Silent p.S641S 0.33 TCGA-D9-A4Z6-06 15 94883438 94883438 G A MCTP2 Missense_Mutation p.R264Q 0.30 tolerated(0.09) probably_damaging(0.957) TCGA-D9-A4Z6-06 16 15711345 15711345 G A KIAA0430 Missense_Mutation p.T923M 0.29 tolerated(0.06) benign(0.137) TCGA-D9-A4Z6-06 16 16263525 16263525 G A ABCC6 Silent p.F991F 0.62 TCGA-D9-A4Z6-06 16 21098343 21098343 C T DNAH3 Missense_Mutation p.E902K 0.34 deleterious(0.04) possibly_damaging(0.474) TCGA-D9-A4Z6-06 16 2282857 2282857 C T E4F1 Silent p.I277I 0.52 TCGA-D9-A4Z6-06 16 27509122 27509122 G A GTF3C1 Missense_Mutation p.P729L 0.45 deleterious(0.01) benign(0.073) TCGA-D9-A4Z6-06 16 46638279 46638279 A T SHCBP1 Missense_Mutation p.L262I 0.45 tolerated(0.41) benign(0.023) TCGA-D9-A4Z6-06 16 46771693 46771693 G A MYLK3 Nonsense_Mutation p.Q311* 0.42 TCGA-D9-A4Z6-06 16 46771695 46771695 G A MYLK3 Missense_Mutation p.P310L 0.43 tolerated(0.26) benign(0.07) TCGA-D9-A4Z6-06 16 48142390 48142390 T A ABCC12 Missense_Mutation p.T778S 0.36 tolerated(0.67) benign(0.003) TCGA-D9-A4Z6-06 16 48162523 48162523 C T ABCC12 Silent p.K454K 0.35 TCGA-D9-A4Z6-06 16 48250034 48250034 G A ABCC11 Silent p.F314F 0.32 TCGA-D9-A4Z6-06 16 57206772 57206772 C T FAM192A Missense_Mutation p.V48I 0.35 tolerated(0.47) benign(0.006) TCGA-D9-A4Z6-06 16 61747770 61747770 C T CDH8 Silent p.P543P 0.36 TCGA-D9-A4Z6-06 16 72170599 72170599 G A PMFBP1 Silent p.I346I 0.42 TCGA-D9-A4Z6-06 16 72984673 72984673 G A ZFHX3 Silent p.L971L 0.30 TCGA-D9-A4Z6-06 16 89347696 89347696 G A ANKRD11 Missense_Mutation p.P1752S 0.30 benign(0.001) TCGA-D9-A4Z6-06 17 12661487 12661487 C T MYOCD Missense_Mutation p.S763L 0.40 deleterious(0.04) benign(0.005) TCGA-D9-A4Z6-06 17 1416798 1416798 G A INPP5K Silent p.D70D 0.37 TCGA-D9-A4Z6-06 17 26824387 26824387 C T SLC13A2 3'UTR 0.46 TCGA-D9-A4Z6-06 17 32647341 32647341 C T CCL8 Missense_Mutation p.P44S 0.30 tolerated(0.3) benign(0.018) TCGA-D9-A4Z6-06 17 3336383 3336383 G A OR1E2 Silent p.G251G 0.23 TCGA-D9-A4Z6-06 17 33690141 33690141 C T SLFN11 Missense_Mutation p.R229K 0.42 tolerated(0.22) benign(0.001) TCGA-D9-A4Z6-06 17 36965995 36965995 G A CWC25 Missense_Mutation p.S217F 0.21 deleterious(0.03) benign(0.009) TCGA-D9-A4Z6-06 17 38498860 38498860 C T RARA Intron 0.30 TCGA-D9-A4Z6-06 17 41143231 41143231 C T RUNDC1 Missense_Mutation p.P447L 0.53 tolerated(0.68) possibly_damaging(0.555) TCGA-D9-A4Z6-06 17 44061091 44061091 C T MAPT Silent p.I307I 0.37 TCGA-D9-A4Z6-06 17 4907322 4907322 C T KIF1C Silent p.I298I 0.33 TCGA-D9-A4Z6-06 17 5436188 5436188 C T NLRP1 Missense_Mutation p.G1084R 0.34 deleterious(0) probably_damaging(0.994) TCGA-D9-A4Z6-06 17 56620078 56620078 C T C17orf47 Silent p.E490E 0.41 TCGA-D9-A4Z6-06 17 66522027 66522027 C T PRKAR1A Nonsense_Mutation p.R228* 0.72 TCGA-D9-A4Z6-06 17 73237572 73237572 G A GGA3 Silent p.N285N 0.70 TCGA-D9-A4Z6-06 17 7416106 7416106 C T POLR2A Silent p.T1540T 0.32 TCGA-D9-A4Z6-06 17 78195378 78195378 G A SLC26A11 Missense_Mutation p.A7T 0.64 deleterious_low_confidence(0.01) benign(0.022) TCGA-D9-A4Z6-06 17 79891038 79891038 T A PYCR1 3'UTR 0.50 TCGA-D9-A4Z6-06 17 8791862 8791862 G A PIK3R5 Silent p.H414H 0.58 TCGA-D9-A4Z6-06 18 18622602 18622602 G A ROCK1 Silent p.S248S 0.40 TCGA-D9-A4Z6-06 18 28991184 28991184 C T DSG4 Missense_Mutation p.P729S 0.30 tolerated(0.28) benign(0) TCGA-D9-A4Z6-06 18 28991185 28991185 C T DSG4 Missense_Mutation p.P729L 0.31 tolerated(0.21) benign(0.001) TCGA-D9-A4Z6-06 18 29102112 29102112 C T DSG2 Missense_Mutation p.S197F 0.54 deleterious(0) probably_damaging(0.988) TCGA-D9-A4Z6-06 18 40500674 40500674 G A RIT2 Intron 0.46 TCGA-D9-A4Z6-06 18 43585483 43585483 C T PSTPIP2 Missense_Mutation p.M123I 0.35 tolerated(0.06) possibly_damaging(0.677) TCGA-D9-A4Z6-06 18 47500851 47500851 C T MYO5B Silent p.V397V 0.33 TCGA-D9-A4Z6-06 18 52265165 52265165 C T DYNAP Missense_Mutation p.S141L 0.33 deleterious(0) benign(0.279) TCGA-D9-A4Z6-06 18 67231792 67231792 C T DOK6 Missense_Mutation p.P46S 0.36 tolerated(0.55) benign(0.023) TCGA-D9-A4Z6-06 19 15793319 15793319 G A CYP4F12 Missense_Mutation p.E216K 0.44 tolerated(0.05) benign(0.085) TCGA-D9-A4Z6-06 19 15839084 15839084 C T OR10H2 Silent p.I77I 0.32 TCGA-D9-A4Z6-06 19 17111250 17111250 C T CPAMD8 Missense_Mutation p.G328R 0.42 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 19 18377106 18377106 G A KIAA1683 Missense_Mutation p.P415L 0.41 tolerated(0.05) benign(0.002) TCGA-D9-A4Z6-06 19 2118669 2118669 G A AP3D1 Silent p.A548A 0.51 TCGA-D9-A4Z6-06 19 22255619 22255619 G C ZNF257 Silent p.L4L 0.36 TCGA-D9-A4Z6-06 19 22271743 22271743 G A ZNF257 Silent p.E397E 0.56 TCGA-D9-A4Z6-06 19 2918369 2918369 T G ZNF57 3'UTR 0.50 TCGA-D9-A4Z6-06 19 3612182 3612182 G A CACTIN Silent p.I672I 0.42 TCGA-D9-A4Z6-06 19 36205964 36205964 G A ZBTB32 Missense_Mutation p.G146R 0.39 tolerated_low_confidence(0.07) benign(0) TCGA-D9-A4Z6-06 19 36256065 36256065 C T C19orf55 Missense_Mutation p.P253S 0.31 tolerated(0.18) benign(0.249) TCGA-D9-A4Z6-06 19 36256066 36256066 C T C19orf55 Missense_Mutation p.P253L 0.35 tolerated(0.05) benign(0.094) TCGA-D9-A4Z6-06 19 39406325 39406325 G A SARS2 Missense_Mutation p.P495L 0.41 deleterious(0) possibly_damaging(0.65) TCGA-D9-A4Z6-06 19 40398125 40398125 C T FCGBP Missense_Mutation p.G2281D 0.28 probably_damaging(0.982) TCGA-D9-A4Z6-06 19 40901474 40901474 A C PRX Missense_Mutation p.S929A 0.37 deleterious(0.03) benign(0.198) TCGA-D9-A4Z6-06 19 41381485 41381485 C T CYP2A7 3'UTR 0.24 TCGA-D9-A4Z6-06 19 42490372 42490372 C T ATP1A3 Missense_Mutation p.G136S 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A4Z6-06 19 43376041 43376041 G A PSG1 Missense_Mutation p.S196F 0.38 deleterious(0) possibly_damaging(0.766) TCGA-D9-A4Z6-06 19 43699242 43699242 G A PSG4 Missense_Mutation p.P298L 0.80 tolerated(0.06) possibly_damaging(0.908) TCGA-D9-A4Z6-06 19 49079341 49079341 G A SULT2B1 Splice_Site p.X72_splice 0.45 TCGA-D9-A4Z6-06 19 49206277 49206277 G A FUT2 Missense_Mutation p.V22I 0.36 tolerated_low_confidence(0.65) benign(0.217) TCGA-D9-A4Z6-06 19 49507628 49507628 T A RUVBL2 Missense_Mutation p.V73D 0.41 deleterious(0) probably_damaging(0.97) TCGA-D9-A4Z6-06 19 51331041 51331041 C T KLK15 Missense_Mutation p.G25D 0.23 tolerated(0.09) benign(0.143) TCGA-D9-A4Z6-06 19 53613010 53613010 A G ZNF415 Silent p.F96F 0.30 TCGA-D9-A4Z6-06 19 53669384 53669384 A G ZNF665 Missense_Mutation p.L120P 0.43 deleterious(0.04) benign(0.022) TCGA-D9-A4Z6-06 19 53741069 53741069 G A ZNF677 Missense_Mutation p.S304L 0.35 deleterious(0.03) benign(0.006) TCGA-D9-A4Z6-06 19 54225471 54225471 A T MIR520G RNA 0.35 TCGA-D9-A4Z6-06 19 54660640 54660640 G A LENG1 Missense_Mutation p.P146S 0.42 tolerated(0.43) benign(0.033) TCGA-D9-A4Z6-06 19 54660641 54660641 G A LENG1 Silent p.A145A 0.43 TCGA-D9-A4Z6-06 19 55174429 55174429 C G LILRB4 5'UTR 0.37 TCGA-D9-A4Z6-06 19 55301641 55301641 G A CTB-61M7.1 RNA 0.32 TCGA-D9-A4Z6-06 19 56369655 56369655 C T NLRP4 Missense_Mutation p.P299L 0.35 tolerated(1) benign(0) TCGA-D9-A4Z6-06 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.20 deleterious(0) possibly_damaging(0.882) TCGA-D9-A4Z6-06 19 56515402 56515402 G A NLRP5 Missense_Mutation p.S128N 0.34 tolerated(0.85) benign(0.002) TCGA-D9-A4Z6-06 19 57089032 57089032 T C ZNF470 Missense_Mutation p.L412P 0.23 deleterious(0) probably_damaging(0.997) TCGA-D9-A4Z6-06 19 57335829 57335829 G A PEG3 Silent p.I65I 0.40 TCGA-D9-A4Z6-06 19 6828862 6828862 G A VAV1 Missense_Mutation p.D406N 0.34 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 19 7998826 7998826 C T TIMM44 Silent p.R202R 0.39 TCGA-D9-A4Z6-06 19 9061307 9061307 G A MUC16 Silent p.I8713I 0.39 TCGA-D9-A4Z6-06 19 9067346 9067346 G A MUC16 Silent p.S6700S 0.42 TCGA-D9-A4Z6-06 19 9083238 9083238 G A MUC16 Silent p.L2859L 0.58 TCGA-D9-A4Z6-06 19 9237504 9237504 C T OR7G3 Silent p.G41G 0.40 TCGA-D9-A4Z6-06 1 147092129 147092129 A C BCL9 Missense_Mutation p.N723T 0.33 deleterious(0) benign(0.014) TCGA-D9-A4Z6-06 1 151847175 151847175 G A THEM4 3'UTR 0.28 TCGA-D9-A4Z6-06 1 152187594 152187594 C G HRNR Missense_Mutation p.G2171R 0.05 unknown(0) TCGA-D9-A4Z6-06 1 152328577 152328577 C T FLG2 Missense_Mutation p.R562K 0.37 unknown(0) TCGA-D9-A4Z6-06 1 152944394 152944394 C G SPRR4 Missense_Mutation p.Q10E 0.36 tolerated_low_confidence(0.08) unknown(0) TCGA-D9-A4Z6-06 1 153655045 153655045 C T NPR1 Missense_Mutation p.P415S 0.35 tolerated(0.23) benign(0.018) TCGA-D9-A4Z6-06 1 154296186 154296186 C T AQP10 Missense_Mutation p.S204F 0.35 deleterious(0) probably_damaging(0.987) TCGA-D9-A4Z6-06 1 154705564 154705564 G T KCNN3 Missense_Mutation p.S502Y 0.28 deleterious(0.03) possibly_damaging(0.769) TCGA-D9-A4Z6-06 1 155883916 155883916 G A KIAA0907 Missense_Mutation p.P614L 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D9-A4Z6-06 1 156500019 156500019 G A IQGAP3 Missense_Mutation p.H1428Y 0.48 deleterious(0) benign(0.105) TCGA-D9-A4Z6-06 1 161967678 161967678 C T OLFML2B Missense_Mutation p.G471R 0.34 tolerated(0.54) benign(0.002) TCGA-D9-A4Z6-06 1 169102023 169102023 C A NME7 Nonstop_Mutation p.*377Yext*5 0.34 TCGA-D9-A4Z6-06 1 181690896 181690896 C T CACNA1E Silent p.I653I 0.45 TCGA-D9-A4Z6-06 1 185976290 185976290 A G HMCN1 Silent p.E1502E 0.31 TCGA-D9-A4Z6-06 1 196748942 196748942 C T CFHR3 Missense_Mutation p.P90L 0.27 tolerated(0.26) benign(0.348) TCGA-D9-A4Z6-06 1 196796131 196796131 C T CFHR1 Silent p.S142S 0.27 TCGA-D9-A4Z6-06 1 201186515 201186515 C T IGFN1 Silent p.I3232I 0.39 TCGA-D9-A4Z6-06 1 203185943 203185943 G A CHIT1 3'UTR 0.28 TCGA-D9-A4Z6-06 1 20501688 20501688 G A PLA2G2C Intron 0.63 TCGA-D9-A4Z6-06 1 208062533 208062533 C T CD34 Missense_Mutation p.M260I 0.35 deleterious(0.04) benign(0.096) TCGA-D9-A4Z6-06 1 216108048 216108048 G A USH2A Missense_Mutation p.P2404S 0.43 probably_damaging(0.948) TCGA-D9-A4Z6-06 1 222919901 222919901 G A FAM177B Missense_Mutation p.G5D 0.36 tolerated(0.2) benign(0.007) TCGA-D9-A4Z6-06 1 228528583 228528583 C T OBSCN Silent p.I6854I 0.50 TCGA-D9-A4Z6-06 1 240374523 240374523 G A FMN2 Silent p.T1351T 0.36 TCGA-D9-A4Z6-06 1 242287823 242287823 C T PLD5 Missense_Mutation p.E294K 0.45 tolerated(0.12) benign(0.049) TCGA-D9-A4Z6-06 1 243471382 243471382 C T SDCCAG8 Missense_Mutation p.R278C 0.42 tolerated(0.09) benign(0.014) TCGA-D9-A4Z6-06 1 245862241 245862241 G A KIF26B Missense_Mutation p.R2027K 0.35 deleterious(0.05) unknown(0) TCGA-D9-A4Z6-06 1 247921025 247921025 G A OR1C1 Silent p.I228I 0.50 TCGA-D9-A4Z6-06 1 247978950 247978950 G A OR14A16 Missense_Mutation p.L28F 0.36 tolerated(0.1) benign(0.071) TCGA-D9-A4Z6-06 1 32130825 32130825 C T COL16A1 Missense_Mutation p.G1168E 0.70 unknown(0) TCGA-D9-A4Z6-06 1 42880551 42880551 C T RIMKLA Missense_Mutation p.S361F 0.57 deleterious_low_confidence(0.05) benign(0.089) TCGA-D9-A4Z6-06 1 71478068 71478068 G A PTGER3 Missense_Mutation p.R333C 0.52 deleterious(0) probably_damaging(0.982) TCGA-D9-A4Z6-06 1 86934746 86934746 G A CLCA1 Missense_Mutation p.G31D 0.59 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 1 94342620 94342620 C T DNTTIP2 Missense_Mutation p.E291K 0.63 tolerated(0.16) possibly_damaging(0.725) TCGA-D9-A4Z6-06 20 14307062 14307062 A G FLRT3 Missense_Mutation p.I364T 0.36 tolerated(0.46) benign(0.002) TCGA-D9-A4Z6-06 20 20226842 20226842 G A C20orf26 Silent p.R714R 0.21 TCGA-D9-A4Z6-06 20 20493232 20493232 G A RALGAPA2 Missense_Mutation p.P1594L 0.26 deleterious(0.02) benign(0.04) TCGA-D9-A4Z6-06 20 33876366 33876366 C T FAM83C Missense_Mutation p.C235Y 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-D9-A4Z6-06 20 35533870 35533870 G A SAMHD1 Missense_Mutation p.P436L 0.31 deleterious(0.01) benign(0.175) TCGA-D9-A4Z6-06 20 42635408 42635408 C T TOX2 Silent p.H129H 0.30 TCGA-D9-A4Z6-06 20 44439883 44439883 C T DNTTIP1 3'UTR 0.38 TCGA-D9-A4Z6-06 20 45130774 45130774 C T ZNF334 Missense_Mutation p.E402K 0.33 tolerated(0.07) probably_damaging(0.991) TCGA-D9-A4Z6-06 20 50400980 50400980 G A SALL4 Missense_Mutation p.P996S 0.33 tolerated(0.1) possibly_damaging(0.764) TCGA-D9-A4Z6-06 20 54956600 54956600 A C AURKA Silent p.G198G 0.45 TCGA-D9-A4Z6-06 20 57769234 57769234 T A ZNF831 Missense_Mutation p.S1054T 0.53 tolerated(0.39) benign(0.019) TCGA-D9-A4Z6-06 20 62324500 62324500 C T RTEL1 Silent p.F976F 0.43 TCGA-D9-A4Z6-06 20 742420 742420 C T SLC52A3 Silent p.G374G 0.30 TCGA-D9-A4Z6-06 21 19629108 19629108 G A CHODL Nonsense_Mutation p.W121* 0.51 TCGA-D9-A4Z6-06 21 27840950 27840950 C T CYYR1 Missense_Mutation p.G112E 0.42 deleterious(0.05) benign(0.002) TCGA-D9-A4Z6-06 21 37603385 37603385 C T DOPEY2 Missense_Mutation p.S768F 0.25 deleterious(0.02) benign(0.049) TCGA-D9-A4Z6-06 21 39672237 39672239 GAG - KCNJ15 In_Frame_Del p.E353del 0.42 TCGA-D9-A4Z6-06 21 41450722 41450722 G A DSCAM Silent p.L1535L 0.50 TCGA-D9-A4Z6-06 21 45670725 45670725 C A DNMT3L Nonsense_Mutation p.E293* 0.25 TCGA-D9-A4Z6-06 21 45987709 45987709 G A TSPEAR Missense_Mutation p.S88F 0.37 deleterious(0) probably_damaging(0.939) TCGA-D9-A4Z6-06 22 22599596 22599596 G A VPREB1 Silent p.R95R 0.43 TCGA-D9-A4Z6-06 22 35481727 35481727 C T ISX 3'UTR 0.31 TCGA-D9-A4Z6-06 22 38823280 38823280 G A KCNJ4 Silent p.I286I 0.39 TCGA-D9-A4Z6-06 22 42388763 42388763 C T SEPT3 Silent p.I287I 0.75 TCGA-D9-A4Z6-06 22 47189461 47189461 C T TBC1D22A Silent p.F61F 0.32 TCGA-D9-A4Z6-06 2 10091971 10091971 G A GRHL1 Silent p.Q3Q 0.30 TCGA-D9-A4Z6-06 2 10091972 10091972 G A GRHL1 Missense_Mutation p.E4K 0.30 tolerated(0.08) benign(0.002) TCGA-D9-A4Z6-06 2 109964176 109964176 G A SH3RF3 Missense_Mutation p.G207E 0.37 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z6-06 2 109964334 109964334 C T SH3RF3 Nonsense_Mutation p.Q260* 0.60 TCGA-D9-A4Z6-06 2 112686862 112686862 G A MERTK Missense_Mutation p.G76E 0.36 tolerated_low_confidence(0.15) benign(0.004) TCGA-D9-A4Z6-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.38 tolerated(0.39) benign(0.015) TCGA-D9-A4Z6-06 2 125261910 125261910 C T CNTNAP5 Silent p.P367P 0.41 TCGA-D9-A4Z6-06 2 128389909 128389909 T C MYO7B Missense_Mutation p.F1754L 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A4Z6-06 2 137814028 137814028 G T THSD7B Nonsense_Mutation p.G60* 0.38 TCGA-D9-A4Z6-06 2 141819654 141819654 C T LRP1B Missense_Mutation p.G401E 0.43 probably_damaging(0.982) TCGA-D9-A4Z6-06 2 155566166 155566166 G A KCNJ3 Missense_Mutation p.D252N 0.34 tolerated(0.82) probably_damaging(0.981) TCGA-D9-A4Z6-06 2 161052932 161052932 C T ITGB6 Splice_Site p.X48_splice 0.40 TCGA-D9-A4Z6-06 2 167055212 167055212 T A SCN9A Missense_Mutation p.K1968N 0.44 tolerated_low_confidence(0.08) unknown(0) TCGA-D9-A4Z6-06 2 168102954 168102954 A C XIRP2 Missense_Mutation p.K1684N 0.42 benign(0.379) TCGA-D9-A4Z6-06 2 174125863 174125863 G A MLTK Missense_Mutation p.E517K 0.34 deleterious(0.04) probably_damaging(0.958) TCGA-D9-A4Z6-06 2 179481212 179481212 C T TTN Nonsense_Mutation p.W16102* 0.34 TCGA-D9-A4Z6-06 2 179623779 179623779 C T TTN Missense_Mutation p.G3412E 0.45 TCGA-D9-A4Z6-06 2 183622485 183622485 G A DNAJC10 Missense_Mutation p.E626K 0.37 tolerated(0.38) benign(0.26) TCGA-D9-A4Z6-06 2 185803655 185803655 C T ZNF804A Missense_Mutation p.H1178Y 0.42 deleterious(0) probably_damaging(0.932) TCGA-D9-A4Z6-06 2 197866501 197866501 G A ANKRD44 Missense_Mutation p.P779L 0.32 tolerated(0.18) benign(0.007) TCGA-D9-A4Z6-06 2 207171218 207171218 C T ZDBF2 Missense_Mutation p.L656F 0.45 deleterious(0.04) possibly_damaging(0.879) TCGA-D9-A4Z6-06 2 213872299 213872299 C T IKZF2 Missense_Mutation p.D456N 0.29 deleterious(0.02) possibly_damaging(0.772) TCGA-D9-A4Z6-06 2 215809759 215809759 G T ABCA12 Missense_Mutation p.Q2437K 0.24 tolerated(0.54) benign(0.175) TCGA-D9-A4Z6-06 2 215848503 215848503 C T ABCA12 Missense_Mutation p.R1417Q 0.31 deleterious(0) benign(0.377) TCGA-D9-A4Z6-06 2 219028978 219028978 G A CXCR1 Silent p.I319I 0.41 TCGA-D9-A4Z6-06 2 219617604 219617604 C T TTLL4 Missense_Mutation p.S1032F 0.31 deleterious(0) possibly_damaging(0.836) TCGA-D9-A4Z6-06 2 219925171 219925171 G A IHH Missense_Mutation p.R7W 0.33 deleterious(0.02) benign(0.001) TCGA-D9-A4Z6-06 2 229890561 229890561 G A PID1 Silent p.F178F 0.45 TCGA-D9-A4Z6-06 2 238245168 238245168 G A COL6A3 Missense_Mutation p.P2859S 0.41 unknown(0) TCGA-D9-A4Z6-06 2 238280832 238280832 G T COL6A3 Missense_Mutation p.F1276L 0.38 probably_damaging(0.976) TCGA-D9-A4Z6-06 2 242707241 242707241 G A D2HGDH Missense_Mutation p.E475K 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 2 26998033 26998033 T A SLC35F6 Missense_Mutation p.F91Y 0.45 deleterious(0.02) probably_damaging(0.965) TCGA-D9-A4Z6-06 2 27169838 27169838 G A DPYSL5 Missense_Mutation p.G557E 0.48 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 2 27521556 27521556 G A TRIM54 Missense_Mutation p.R97Q 0.47 deleterious(0.02) possibly_damaging(0.761) TCGA-D9-A4Z6-06 2 27706215 27706215 G A IFT172 Missense_Mutation p.H171Y 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 2 32093518 32093518 G A MEMO1 Missense_Mutation p.S269L 0.43 deleterious(0.01) benign(0.146) TCGA-D9-A4Z6-06 2 44128516 44128516 G A LRPPRC Missense_Mutation p.S1171F 0.37 deleterious(0) benign(0.379) TCGA-D9-A4Z6-06 2 54001462 54001462 C T CHAC2 Missense_Mutation p.L119F 0.34 deleterious(0.04) probably_damaging(0.947) TCGA-D9-A4Z6-06 2 74043654 74043654 C T C2orf78 Silent p.S768S 0.31 TCGA-D9-A4Z6-06 2 74785780 74785780 C T M1AP 3'UTR 0.57 TCGA-D9-A4Z6-06 3 10382201 10382201 G A ATP2B2 Silent p.I1035I 0.43 TCGA-D9-A4Z6-06 3 107097078 107097078 C T CCDC54 Missense_Mutation p.P215L 0.46 deleterious(0.03) benign(0.139) TCGA-D9-A4Z6-06 3 108189571 108189571 C T MYH15 Missense_Mutation p.D473N 0.47 deleterious(0) probably_damaging(0.988) TCGA-D9-A4Z6-06 3 111899464 111899464 C T SLC9C1 Missense_Mutation p.E899K 0.43 tolerated(0.32) benign(0.133) TCGA-D9-A4Z6-06 3 112647950 112647950 C T CD200R1 Intron 0.37 TCGA-D9-A4Z6-06 3 112648256 112648256 G A CD200R1 Silent p.L101L 0.33 TCGA-D9-A4Z6-06 3 121001176 121001176 C T STXBP5L Missense_Mutation p.S725F 0.38 tolerated(0.11) benign(0.013) TCGA-D9-A4Z6-06 3 140419753 140419753 G A TRIM42 Silent p.G703G 0.42 TCGA-D9-A4Z6-06 3 153994657 153994657 G A DHX36 Missense_Mutation p.P907L 0.26 deleterious(0.01) probably_damaging(0.945) TCGA-D9-A4Z6-06 3 153994658 153994658 G A DHX36 Missense_Mutation p.P907S 0.25 deleterious(0.05) probably_damaging(0.993) TCGA-D9-A4Z6-06 3 180397254 180397254 C T CCDC39 5'UTR 0.43 TCGA-D9-A4Z6-06 3 184049296 184049296 C T EIF4G1 Missense_Mutation p.P1440S 0.37 tolerated(0.81) benign(0.082) TCGA-D9-A4Z6-06 3 186938046 186938046 C T MASP1 Missense_Mutation p.G638E 0.75 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 3 195702718 195702718 G A SDHAP1 RNA 0.33 TCGA-D9-A4Z6-06 3 197659062 197659062 G A IQCG Silent p.F209F 0.65 TCGA-D9-A4Z6-06 3 38595774 38595774 G A SCN5A Silent p.I1603I 0.80 TCGA-D9-A4Z6-06 3 49147649 49147649 G A USP19 Silent p.L1334L 0.75 TCGA-D9-A4Z6-06 3 52836730 52836730 G A ITIH3 Missense_Mutation p.M539I 0.52 tolerated(0.3) benign(0.007) TCGA-D9-A4Z6-06 3 9768363 9768363 C T CPNE9 Silent p.P453P 0.29 TCGA-D9-A4Z6-06 3 97686114 97686114 C T MINA Silent p.G108G 0.36 TCGA-D9-A4Z6-06 3 97983875 97983875 G A OR5H6 Silent p.G249G 0.37 TCGA-D9-A4Z6-06 4 110415963 110415963 G A SEC24B Missense_Mutation p.G480E 0.67 tolerated(0.09) benign(0.008) TCGA-D9-A4Z6-06 4 120243228 120243228 G A FABP2 Silent p.D10D 0.57 TCGA-D9-A4Z6-06 4 126370128 126370128 G A FAT4 Missense_Mutation p.E2653K 0.56 benign(0.021) TCGA-D9-A4Z6-06 4 156631888 156631888 C T GUCY1A3 Silent p.L191L 0.69 TCGA-D9-A4Z6-06 4 167020590 167020590 G A TLL1 Missense_Mutation p.E940K 0.59 tolerated(0.11) possibly_damaging(0.457) TCGA-D9-A4Z6-06 4 46312213 46312213 G A GABRA2 Missense_Mutation p.S179L 0.58 deleterious(0) benign(0.008) TCGA-D9-A4Z6-06 4 48604128 48604128 G A FRYL Missense_Mutation p.P315L 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 4 9892309 9892309 C T SLC2A9 Silent p.R380R 0.69 TCGA-D9-A4Z6-06 5 112151249 112151252 CACT - APC Frame_Shift_Del p.H298Lfs*6 0.65 TCGA-D9-A4Z6-06 5 137243556 137243556 T A PKD2L2 Nonsense_Mutation p.Y367* 0.82 TCGA-D9-A4Z6-06 5 140516083 140516083 C A PCDHB5 Missense_Mutation p.P356Q 0.51 deleterious_low_confidence(0.01) benign(0.346) TCGA-D9-A4Z6-06 5 140626920 140626920 G A PCDHB15 Missense_Mutation p.V592M 0.54 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-D9-A4Z6-06 5 140698781 140698781 C T TAF7 Silent p.L277L 0.71 TCGA-D9-A4Z6-06 5 150718678 150718678 G A SLC36A2 Silent p.I156I 0.69 TCGA-D9-A4Z6-06 5 156667109 156667109 G A ITK Missense_Mutation p.E297K 0.58 tolerated(0.72) benign(0.145) TCGA-D9-A4Z6-06 5 167420120 167420120 G A TENM2 Nonsense_Mutation p.W373* 0.72 TCGA-D9-A4Z6-06 5 1879629 1879629 G A IRX4 Missense_Mutation p.S242F 0.74 deleterious(0.03) benign(0.06) TCGA-D9-A4Z6-06 5 41054925 41054925 G A MROH2B Missense_Mutation p.H351Y 0.62 tolerated(0.4) benign(0.001) TCGA-D9-A4Z6-06 5 42804856 42804856 G A SEPP1 Missense_Mutation p.H146Y 0.86 deleterious(0.05) possibly_damaging(0.736) TCGA-D9-A4Z6-06 6 107040048 107040048 G A RTN4IP1 Missense_Mutation p.S266F 0.33 deleterious(0.03) benign(0.128) TCGA-D9-A4Z6-06 6 111689212 111689212 G A REV3L Missense_Mutation p.L1927F 0.48 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 6 117622181 117622181 C T ROS1 Missense_Mutation p.R2230K 0.54 tolerated(0.76) benign(0.002) TCGA-D9-A4Z6-06 6 119341252 119341252 G A FAM184A Missense_Mutation p.S408L 0.51 tolerated(0.08) benign(0.013) TCGA-D9-A4Z6-06 6 26413719 26413719 C A BTN3A1 Silent p.P447P 0.27 TCGA-D9-A4Z6-06 6 27222846 27222846 C T PRSS16 Missense_Mutation p.S471F 0.27 deleterious(0) probably_damaging(0.942) TCGA-D9-A4Z6-06 6 29364925 29364926 - T OR12D2 Frame_Shift_Ins p.H153Pfs*26 0.39 TCGA-D9-A4Z6-06 6 29637969 29637969 G A MOG Intron 0.18 TCGA-D9-A4Z6-06 6 31729911 31729911 G A MSH5 Missense_Mutation p.G782E 0.28 deleterious(0.04) possibly_damaging(0.844) TCGA-D9-A4Z6-06 6 31852256 31852256 G A EHMT2 Missense_Mutation p.S895F 0.24 deleterious(0) probably_damaging(0.949) TCGA-D9-A4Z6-06 6 31975458 31975458 G A AL645922.1 5'Flank 0.29 TCGA-D9-A4Z6-06 6 35965560 35965560 G A SLC26A8 Silent p.S194S 0.29 TCGA-D9-A4Z6-06 6 41250182 41250182 G A TREM1 Silent p.P119P 0.27 TCGA-D9-A4Z6-06 6 46826212 46826212 G A GPR116 Missense_Mutation p.S1143L 0.32 deleterious(0) probably_damaging(0.941) TCGA-D9-A4Z6-06 6 72889537 72889537 G A RIMS1 Missense_Mutation p.G244E 0.28 deleterious(0) possibly_damaging(0.84) TCGA-D9-A4Z6-06 6 75898207 75898207 T G COL12A1 Missense_Mutation p.T290P 0.31 benign(0.004) TCGA-D9-A4Z6-06 6 85446859 85446859 G A TBX18 Silent p.S456S 0.40 TCGA-D9-A4Z6-06 6 88125461 88125461 G A C6ORF165 Missense_Mutation p.R114Q 0.46 deleterious(0.01) benign(0.069) TCGA-D9-A4Z6-06 7 100153353 100153353 C T AGFG2 Missense_Mutation p.P291L 0.40 tolerated(0.12) benign(0.018) TCGA-D9-A4Z6-06 7 107720083 107720083 G A LAMB4 Missense_Mutation p.P617L 0.23 tolerated(0.08) benign(0.059) TCGA-D9-A4Z6-06 7 117175335 117175335 C T CFTR Missense_Mutation p.P205S 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 7 121651007 121651007 C T PTPRZ1 Missense_Mutation p.S636L 0.47 deleterious_low_confidence(0.03) benign(0.282) TCGA-D9-A4Z6-06 7 127228564 127228564 C T ARF5 Silent p.T4T 0.39 TCGA-D9-A4Z6-06 7 134216685 134216685 C T AKR1B10 Missense_Mutation p.P87L 0.28 tolerated(0.11) benign(0.041) TCGA-D9-A4Z6-06 7 140434522 140434522 G A BRAF Missense_Mutation p.R726C 0.42 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 7 140434523 140434523 G A BRAF Silent p.H725H 0.41 TCGA-D9-A4Z6-06 7 142162077 142162077 A T TRBV6-6 Nonsense_Mutation p.Y66* 0.43 TCGA-D9-A4Z6-06 7 142573596 142573596 G A TRPV6 Missense_Mutation p.S275L 0.36 deleterious(0.01) benign(0.283) TCGA-D9-A4Z6-06 7 149172180 149172180 G A ZNF746 Silent p.A411A 0.44 TCGA-D9-A4Z6-06 7 18875090 18875090 G A HDAC9 Missense_Mutation p.D823N 0.28 deleterious(0) probably_damaging(0.939) TCGA-D9-A4Z6-06 7 21901480 21901480 G A DNAH11 Missense_Mutation p.V3745M 0.51 benign(0.016) TCGA-D9-A4Z6-06 7 2289596 2289596 T C NUDT1 Missense_Mutation p.F109S 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 7 2613102 2613102 G A IQCE Missense_Mutation p.E149K 0.39 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 7 37780713 37780713 C T GPR141 Missense_Mutation p.P240S 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 7 44578685 44578685 G A NPC1L1 Silent p.D437D 0.37 TCGA-D9-A4Z6-06 7 47847973 47847973 C T PKD1L1 Missense_Mutation p.G2567R 0.31 deleterious(0) probably_damaging(0.984) TCGA-D9-A4Z6-06 7 47882633 47882633 G A PKD1L1 Missense_Mutation p.S1791F 0.31 deleterious(0.03) benign(0.139) TCGA-D9-A4Z6-06 7 53103978 53103978 G A POM121L12 Missense_Mutation p.G205D 0.37 tolerated(0.6) probably_damaging(0.982) TCGA-D9-A4Z6-06 7 64168143 64168143 G A ZNF107 Silent p.K487K 0.40 TCGA-D9-A4Z6-06 7 65157789 65157789 G A INTS4L2 RNA 0.19 TCGA-D9-A4Z6-06 7 66489964 66489964 T G TYW1 Missense_Mutation p.D313E 0.45 deleterious(0) probably_damaging(0.999) TCGA-D9-A4Z6-06 7 70853245 70853245 G A WBSCR17 Silent p.K149K 0.43 TCGA-D9-A4Z6-06 7 82784887 82784887 C A PCLO Missense_Mutation p.G357V 0.10 unknown(0) TCGA-D9-A4Z6-06 7 83823866 83823866 C T SEMA3A Missense_Mutation p.G13R 0.34 tolerated(0.08) benign(0.244) TCGA-D9-A4Z6-06 7 92731648 92731648 G A SAMD9 Missense_Mutation p.P1255S 0.37 tolerated(1) benign(0.001) TCGA-D9-A4Z6-06 7 99272209 99272209 C T CYP3A5 Splice_Site p.X56_splice 0.23 TCGA-D9-A4Z6-06 7 99375663 99375663 C T CYP3A4 Missense_Mutation p.G69E 0.37 deleterious(0.01) probably_damaging(0.91) TCGA-D9-A4Z6-06 8 101020717 101020717 C T RGS22 Missense_Mutation p.M749I 0.32 tolerated(0.08) benign(0.01) TCGA-D9-A4Z6-06 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A4Z6-06 8 110980759 110980759 G A KCNV1 Missense_Mutation p.S354F 0.27 deleterious(0) probably_damaging(0.925) TCGA-D9-A4Z6-06 8 130778026 130778026 G A GSDMC Missense_Mutation p.P140S 0.42 tolerated(0.11) possibly_damaging(0.677) TCGA-D9-A4Z6-06 8 133152325 133152325 G A KCNQ3 Silent p.V522V 0.28 TCGA-D9-A4Z6-06 8 139180190 139180190 C T FAM135B Nonsense_Mutation p.W402* 0.37 TCGA-D9-A4Z6-06 8 145113487 145113487 C T OPLAH Missense_Mutation p.G232E 0.32 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z6-06 8 2057191 2057191 C T MYOM2 Missense_Mutation p.P1017S 0.43 deleterious(0) probably_damaging(0.998) TCGA-D9-A4Z6-06 8 27461904 27461904 C T CLU Missense_Mutation p.D280N 0.34 tolerated(0.47) benign(0.024) TCGA-D9-A4Z6-06 8 52336291 52336291 C T PXDNL Missense_Mutation p.E547K 0.47 deleterious(0.02) benign(0.21) TCGA-D9-A4Z6-06 8 55533563 55533563 C T RP1 Missense_Mutation p.H13Y 0.41 deleterious(0.05) benign(0.014) TCGA-D9-A4Z6-06 8 57079381 57079381 G A PLAG1 Silent p.I308I 0.40 TCGA-D9-A4Z6-06 8 59514003 59514003 C G NSMAF Splice_Site p.X437_splice 0.41 TCGA-D9-A4Z6-06 8 77764978 77764978 G A ZFHX4 Missense_Mutation p.E1941K 0.28 possibly_damaging(0.502) TCGA-D9-A4Z6-06 9 111956585 111956585 G A EPB41L4B Missense_Mutation p.S713F 0.32 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-D9-A4Z6-06 9 113234603 113234603 C T SVEP1 Missense_Mutation p.G867E 0.48 probably_damaging(0.994) TCGA-D9-A4Z6-06 9 130915390 130915390 G A LCN2 Missense_Mutation p.D197N 0.37 deleterious(0.04) benign(0.041) TCGA-D9-A4Z6-06 9 133946923 133946923 C T LAMC3 Missense_Mutation p.S1041F 0.37 tolerated(0.71) benign(0.022) TCGA-D9-A4Z6-06 9 21216873 21216873 C T IFNA16 Silent p.R144R 0.61 TCGA-D9-A4Z6-06 9 34622353 34622353 G A ARID3C Missense_Mutation p.P347S 0.43 tolerated(0.27) benign(0.015) TCGA-D9-A4Z6-06 9 36169648 36169648 C T CCIN Missense_Mutation p.S50F 0.65 deleterious(0) probably_damaging(1) TCGA-D9-A4Z6-06 9 41962611 41962611 C T RP11-204M4.2 RNA 0.16 TCGA-D9-A4Z6-06 9 5123046 5123046 C T JAK2 Silent p.A1034A 0.50 TCGA-D9-A4Z6-06 9 75526907 75526907 A C ALDH1A1 Missense_Mutation p.N389K 0.70 deleterious(0.02) possibly_damaging(0.648) TCGA-D9-A4Z6-06 9 79952424 79952424 C T VPS13A Missense_Mutation p.L2117F 0.64 deleterious(0) probably_damaging(0.973) TCGA-D9-A4Z6-06 9 87338524 87338524 C T NTRK2 Missense_Mutation p.T207I 0.73 deleterious(0.01) probably_damaging(0.972) TCGA-D9-A4Z6-06 9 93650798 93650798 G A SYK Missense_Mutation p.G575E 0.31 deleterious(0.03) probably_damaging(1) TCGA-D9-A4Z6-06 X 100910812 100910815 TAGT - ARMCX2 Frame_Shift_Del p.N587Ifs*26 0.20 TCGA-D9-A4Z6-06 X 101381968 101381968 G A TCEAL2 Missense_Mutation p.E56K 0.79 deleterious(0.04) possibly_damaging(0.621) TCGA-D9-A4Z6-06 X 112024188 112024188 G A AMOT Missense_Mutation p.S800F 0.73 unknown(0) TCGA-D9-A4Z6-06 X 129290468 129290468 A G AIFM1 Silent p.I72I 0.83 TCGA-D9-A4Z6-06 X 135429496 135429496 G A GPR112 Missense_Mutation p.D1211N 0.80 tolerated(0.14) benign(0.005) TCGA-D9-A4Z6-06 X 140985038 140985038 C T MAGEC3 Silent p.F498F 0.69 TCGA-D9-A4Z6-06 X 152613170 152613170 C T ZNF275 Intron 0.65 TCGA-D9-A4Z6-06 X 73961871 73961871 T A KIAA2022 Missense_Mutation p.N841Y 0.76 tolerated(0.34) benign(0.059) TCGA-D9-A6E9-06 10 105974130 105974130 C T WDR96 Silent p.V157V 0.47 TCGA-D9-A6E9-06 10 123843465 123843465 G T TACC2 Missense_Mutation p.G484W 0.34 probably_damaging(0.988) TCGA-D9-A6E9-06 10 124389970 124389970 A T DMBT1 Missense_Mutation p.T1868S 0.36 tolerated(0.32) probably_damaging(0.969) TCGA-D9-A6E9-06 10 13705498 13705498 C T FRMD4A Missense_Mutation p.A539T 0.41 tolerated(0.42) benign(0.042) TCGA-D9-A6E9-06 10 27702300 27702300 G A PTCHD3 Missense_Mutation p.P294S 0.38 tolerated(0.43) benign(0.061) TCGA-D9-A6E9-06 10 37490168 37490168 C T ANKRD30A Silent p.L872L 0.23 TCGA-D9-A6E9-06 10 95072831 95072831 G A MYOF Silent p.S1945S 0.36 TCGA-D9-A6E9-06 10 97366453 97366453 C T ALDH18A1 3'UTR 0.21 TCGA-D9-A6E9-06 11 126137981 126137981 C T SRPR Missense_Mutation p.E40K 0.40 tolerated(0.05) probably_damaging(0.973) TCGA-D9-A6E9-06 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.06 TCGA-D9-A6E9-06 11 22399065 22399065 G A SLC17A6 Missense_Mutation p.E510K 0.31 tolerated(0.28) benign(0.025) TCGA-D9-A6E9-06 11 35336568 35336568 A C SLC1A2 Splice_Site p.X104_splice 0.19 TCGA-D9-A6E9-06 11 55065680 55065680 G A TRIM51HP RNA 0.15 TCGA-D9-A6E9-06 11 64821042 64821042 C T NAALADL1 Silent p.V333V 0.41 TCGA-D9-A6E9-06 11 6503274 6503274 G A TIMM10B Splice_Site p.X46_splice 0.21 TCGA-D9-A6E9-06 11 6503275 6503275 G A TIMM10B Missense_Mutation p.E46K 0.21 deleterious(0.01) possibly_damaging(0.609) TCGA-D9-A6E9-06 11 66411651 66411651 C T RBM4 Intron 0.36 TCGA-D9-A6E9-06 11 68552289 68552289 C T CPT1A Missense_Mutation p.G386E 0.37 deleterious(0.01) benign(0.118) TCGA-D9-A6E9-06 11 71259580 71259580 C T KRTAP5-9 5'UTR 0.20 TCGA-D9-A6E9-06 11 722403 722403 C T EPS8L2 Silent p.I354I 0.20 TCGA-D9-A6E9-06 11 75623074 75623074 C T UVRAG Missense_Mutation p.S195F 0.36 deleterious(0.01) possibly_damaging(0.903) TCGA-D9-A6E9-06 12 101490387 101490387 G A ANO4 Silent p.L569L 0.06 TCGA-D9-A6E9-06 12 10530802 10530802 C T KLRK1 Nonsense_Mutation p.W154* 0.21 TCGA-D9-A6E9-06 12 10865863 10865863 G A YBX3 Missense_Mutation p.R174W 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A6E9-06 12 109306298 109306298 C T SVOP 3'UTR 0.14 TCGA-D9-A6E9-06 12 132474604 132474604 C T EP400 Silent p.A835A 0.17 TCGA-D9-A6E9-06 12 14941890 14941890 G A WBP11 Missense_Mutation p.P496L 0.21 tolerated_low_confidence(0.08) unknown(0) TCGA-D9-A6E9-06 12 30887957 30887957 C T CAPRIN2 Missense_Mutation p.D252N 0.13 deleterious(0.02) possibly_damaging(0.543) TCGA-D9-A6E9-06 12 46633487 46633487 C T SLC38A1 Missense_Mutation p.E33K 0.37 tolerated(0.27) benign(0.206) TCGA-D9-A6E9-06 12 48371897 48371897 C T COL2A1 Missense_Mutation p.E1003K 0.41 unknown(0) TCGA-D9-A6E9-06 12 50498508 50498508 C T GPD1 Missense_Mutation p.P65S 0.36 deleterious(0) probably_damaging(0.956) TCGA-D9-A6E9-06 12 51754581 51754581 G A GALNT6 Missense_Mutation p.S364F 0.28 deleterious(0.01) possibly_damaging(0.819) TCGA-D9-A6E9-06 12 55758906 55758906 C T OR6C75 Silent p.S4S 0.31 TCGA-D9-A6E9-06 12 56351216 56351216 C T PMEL Missense_Mutation p.V291I 0.07 tolerated(0.09) possibly_damaging(0.714) TCGA-D9-A6E9-06 12 57112564 57112564 G A NACA Intron 0.33 TCGA-D9-A6E9-06 12 81568680 81568680 C T ACSS3 Silent p.D404D 0.10 TCGA-D9-A6E9-06 12 89984764 89984764 G C ATP2B1 Silent p.L1220L 0.14 TCGA-D9-A6E9-06 12 91498054 91498054 G A LUM Missense_Mutation p.S302F 0.12 deleterious(0) benign(0.022) TCGA-D9-A6E9-06 12 9243871 9243871 G A A2M Missense_Mutation p.P799S 0.18 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 12 96717786 96717787 TG - CDK17 Frame_Shift_Del p.H74Qfs*25 0.18 TCGA-D9-A6E9-06 13 26542784 26542784 G A ATP8A2 Missense_Mutation p.G1115E 0.16 tolerated(0.42) benign(0.117) TCGA-D9-A6E9-06 13 32835893 32835893 C G FRY Silent p.S2519S 0.11 TCGA-D9-A6E9-06 13 70275840 70275840 T C KLHL1 Silent p.Q747Q 0.26 TCGA-D9-A6E9-06 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.05 tolerated(0.06) benign(0.055) TCGA-D9-A6E9-06 14 22315145 22315145 G A TRAV8-2 Missense_Mutation p.S28N 0.29 tolerated(0.2) benign(0.072) TCGA-D9-A6E9-06 14 23868113 23868113 C T MYH6 Missense_Mutation p.G572E 0.15 deleterious(0.05) probably_damaging(0.982) TCGA-D9-A6E9-06 14 39790197 39790197 C T CTAGE5 Missense_Mutation p.P542S 0.29 deleterious(0.04) possibly_damaging(0.652) TCGA-D9-A6E9-06 14 58031069 58031069 C A SLC35F4 Silent p.V450V 0.29 TCGA-D9-A6E9-06 14 60928261 60928261 C T C14orf39 Silent p.T341T 0.26 TCGA-D9-A6E9-06 14 63174870 63174870 T C KCNH5 Missense_Mutation p.K775E 0.23 tolerated_low_confidence(0.37) benign(0.002) TCGA-D9-A6E9-06 14 74428158 74428158 G A COQ6 Silent p.G365G 0.19 TCGA-D9-A6E9-06 14 93712586 93712586 G A BTBD7 Missense_Mutation p.P723L 0.13 deleterious(0) probably_damaging(0.997) TCGA-D9-A6E9-06 15 102192586 102192586 C T TM2D3 5'Flank 0.17 TCGA-D9-A6E9-06 15 25477588 25477588 C T SNORD115-34 RNA 0.30 TCGA-D9-A6E9-06 15 25496010 25496010 C T SNORD115-44 RNA 0.15 TCGA-D9-A6E9-06 15 54306409 54306409 C T UNC13C Missense_Mutation p.P437S 0.23 tolerated_low_confidence(0.33) benign(0.021) TCGA-D9-A6E9-06 15 64791706 64791706 G T ZNF609 Nonsense_Mutation p.G30* 0.26 TCGA-D9-A6E9-06 15 78909364 78909364 A T CHRNA3 Splice_Site p.X126_splice 0.42 TCGA-D9-A6E9-06 15 89015862 89015862 T A MRPS11 Missense_Mutation p.Y63N 0.43 tolerated(0.07) benign(0.223) TCGA-D9-A6E9-06 15 99645348 99645348 G A SYNM 5'UTR 0.33 TCGA-D9-A6E9-06 16 11375088 11375088 C T PRM1 Missense_Mutation p.R3K 0.19 unknown(0) TCGA-D9-A6E9-06 16 18597233 18597233 G C ABCC6P1 RNA 0.20 TCGA-D9-A6E9-06 16 24902354 24902354 G A SLC5A11 Missense_Mutation p.G277R 0.33 deleterious(0.01) probably_damaging(1) TCGA-D9-A6E9-06 16 25264281 25264281 G A ZKSCAN2 Missense_Mutation p.P222S 0.14 tolerated(0.19) benign(0.004) TCGA-D9-A6E9-06 16 3254794 3254794 C T OR1F1 Missense_Mutation p.P183L 0.23 deleterious(0.04) benign(0.248) TCGA-D9-A6E9-06 16 47703278 47703278 C T PHKB Silent p.I860I 0.13 TCGA-D9-A6E9-06 16 614879 614879 G A C16orf11 Missense_Mutation p.G430S 0.14 tolerated(0.35) benign(0.384) TCGA-D9-A6E9-06 16 74694866 74694866 G A RFWD3 Missense_Mutation p.A161V 0.34 tolerated_low_confidence(0.29) benign(0.004) TCGA-D9-A6E9-06 17 10546182 10546182 G A MYH3 Silent p.F514F 0.28 TCGA-D9-A6E9-06 17 27248744 27248744 G A PHF12 Silent p.L266L 0.17 TCGA-D9-A6E9-06 17 33482341 33482341 G A UNC45B Silent p.R222R 0.25 TCGA-D9-A6E9-06 17 42336711 42336711 G A SLC4A1 Silent p.G232G 0.16 TCGA-D9-A6E9-06 17 45915345 45915345 C T SCRN2 Silent p.Q381Q 0.18 TCGA-D9-A6E9-06 17 46628422 46628422 C T HOXB3 Silent p.R190R 0.35 TCGA-D9-A6E9-06 17 65890259 65890259 C T BPTF Nonsense_Mutation p.R841* 0.15 TCGA-D9-A6E9-06 17 7221241 7221241 G A NEURL4 Silent p.F1357F 0.20 TCGA-D9-A6E9-06 17 72588986 72588986 G A C17orf77 3'UTR 0.38 TCGA-D9-A6E9-06 17 73913921 73913921 C T FBF1 Silent p.E784E 0.35 TCGA-D9-A6E9-06 17 7909790 7909790 C G GUCY2D Missense_Mutation p.A379G 0.30 tolerated(0.58) probably_damaging(0.965) TCGA-D9-A6E9-06 17 8408108 8408108 G A MYH10 Missense_Mutation p.A1168V 0.17 probably_damaging(0.997) TCGA-D9-A6E9-06 18 29056048 29056048 C T DSG3 Missense_Mutation p.S942F 0.25 deleterious(0) probably_damaging(0.94) TCGA-D9-A6E9-06 18 59166440 59166440 G A CDH20 Missense_Mutation p.G90R 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 18 61256066 61256066 G A SERPINB13 Silent p.E55E 0.14 TCGA-D9-A6E9-06 18 72234468 72234468 G A CNDP1 Missense_Mutation p.D186N 0.12 deleterious(0.04) possibly_damaging(0.548) TCGA-D9-A6E9-06 18 72346737 72346737 C T ZNF407 Silent p.L1254L 0.11 TCGA-D9-A6E9-06 19 3382116 3382116 C T NFIC Missense_Mutation p.T146I 0.36 deleterious(0) possibly_damaging(0.874) TCGA-D9-A6E9-06 19 36964237 36964237 T C ZNF566 Missense_Mutation p.M45V 0.40 tolerated(0.15) benign(0.002) TCGA-D9-A6E9-06 19 4363385 4363385 G A SH3GL1 Missense_Mutation p.A237V 0.20 tolerated(0.62) benign(0.066) TCGA-D9-A6E9-06 19 44934488 44934488 G A ZNF229 Silent p.S156S 0.39 TCGA-D9-A6E9-06 19 45885983 45885983 G A PPP1R13L Silent p.D750D 0.19 TCGA-D9-A6E9-06 19 47192825 47192825 G A PRKD2 Missense_Mutation p.P647L 0.43 deleterious(0) probably_damaging(0.971) TCGA-D9-A6E9-06 19 47231919 47231919 G T STRN4 Missense_Mutation p.P332Q 0.14 tolerated(0.57) benign(0.316) TCGA-D9-A6E9-06 19 47570723 47570723 C T ZC3H4 Silent p.E934E 0.14 TCGA-D9-A6E9-06 19 54209590 54209590 G A MIR526A1 RNA 0.53 TCGA-D9-A6E9-06 19 54308622 54308622 C T NLRP12 Missense_Mutation p.D776N 0.29 tolerated(0.1) probably_damaging(0.986) TCGA-D9-A6E9-06 19 55112307 55112307 G A LILRA1 3'UTR 0.26 TCGA-D9-A6E9-06 19 55179419 55179419 A G LILRB4 Silent p.E432E 0.12 TCGA-D9-A6E9-06 19 55179420 55179420 G A LILRB4 Missense_Mutation p.G433R 0.12 tolerated(0.33) benign(0.001) TCGA-D9-A6E9-06 19 56459380 56459380 G A NLRP8 Missense_Mutation p.E38K 0.37 tolerated(0.29) benign(0.006) TCGA-D9-A6E9-06 19 56903162 56903162 T C ZNF582 5'UTR 0.08 TCGA-D9-A6E9-06 19 58190146 58190146 G A ZSCAN4 Missense_Mutation p.G392E 0.09 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 19 8563369 8563369 C T PRAM1 Silent p.R441R 0.23 TCGA-D9-A6E9-06 19 9061796 9061796 C T MUC16 Silent p.P8550P 0.42 TCGA-D9-A6E9-06 19 9213466 9213466 T C OR7G2 Missense_Mutation p.S173G 0.40 deleterious(0.02) benign(0.085) TCGA-D9-A6E9-06 1 100207779 100207779 G A FRRS1 Silent p.V128V 0.10 TCGA-D9-A6E9-06 1 10166317 10166317 C T UBE4B Missense_Mutation p.P291L 0.16 tolerated_low_confidence(0.12) possibly_damaging(0.726) TCGA-D9-A6E9-06 1 1222185 1222185 G A SCNN1D Missense_Mutation p.E317K 0.28 tolerated(0.19) benign(0.026) TCGA-D9-A6E9-06 1 12378304 12378304 C T VPS13D Missense_Mutation p.P2442S 0.19 probably_damaging(0.986) TCGA-D9-A6E9-06 1 156812975 156812975 G A INSRR Missense_Mutation p.R983W 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 1 159898630 159898630 C T IGSF9 Missense_Mutation p.D850N 0.24 deleterious(0) probably_damaging(0.927) TCGA-D9-A6E9-06 1 171605584 171605584 C T MYOC Silent p.G332G 0.27 TCGA-D9-A6E9-06 1 175067702 175067702 G A TNN Missense_Mutation p.S697N 0.18 deleterious(0) probably_damaging(0.997) TCGA-D9-A6E9-06 1 179460696 179460696 G A AXDND1 Missense_Mutation p.M705I 0.12 deleterious(0.01) benign(0.009) TCGA-D9-A6E9-06 1 183091340 183091340 C T LAMC1 Silent p.P785P 0.19 TCGA-D9-A6E9-06 1 183255866 183255866 C T NMNAT2 Missense_Mutation p.G127R 0.23 deleterious(0.02) possibly_damaging(0.778) TCGA-D9-A6E9-06 1 183273853 183273853 C T NMNAT2 Intron 0.29 TCGA-D9-A6E9-06 1 202097430 202097430 G A GPR37L1 Missense_Mutation p.G398S 0.26 tolerated(0.82) benign(0.034) TCGA-D9-A6E9-06 1 223567300 223567300 C T C1orf65 Silent p.F161F 0.17 TCGA-D9-A6E9-06 1 27697463 27697463 C T FCN3 Missense_Mutation p.V132M 0.09 deleterious(0) possibly_damaging(0.881) TCGA-D9-A6E9-06 1 36603489 36603489 G A TRAPPC3 Missense_Mutation p.P111S 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 20 11898985 11898985 C T BTBD3 Missense_Mutation p.T21M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.609) TCGA-D9-A6E9-06 20 21209742 21209742 C T PLK1S1 RNA 0.16 TCGA-D9-A6E9-06 20 31291075 31291075 G A COMMD7 3'UTR 0.20 TCGA-D9-A6E9-06 20 33345256 33345256 G A NCOA6 Missense_Mutation p.P432L 0.31 possibly_damaging(0.717) TCGA-D9-A6E9-06 20 33874755 33874755 G A FAM83C Silent p.P609P 0.27 TCGA-D9-A6E9-06 20 34797671 34797671 G A EPB41L1 Missense_Mutation p.D644N 0.23 tolerated(0.08) benign(0.318) TCGA-D9-A6E9-06 20 37546999 37546999 C T PPP1R16B Missense_Mutation p.A465V 0.24 tolerated(0.2) benign(0.001) TCGA-D9-A6E9-06 20 44174499 44174499 G A EPPIN Intron 0.29 TCGA-D9-A6E9-06 20 44485899 44485899 G A ACOT8 Missense_Mutation p.P19L 0.32 tolerated(0.06) benign(0.002) TCGA-D9-A6E9-06 20 5089998 5089998 C T TMEM230 Missense_Mutation p.D90N 0.24 tolerated(0.24) benign(0.066) TCGA-D9-A6E9-06 20 61937372 61937372 C T COL20A1 Silent p.S159S 0.20 TCGA-D9-A6E9-06 22 20780064 20780064 G A SCARF2 Silent p.L738L 0.54 TCGA-D9-A6E9-06 22 24621250 24621250 C T GGT5 Missense_Mutation p.G490E 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 22 30415991 30415991 C T MTMR3 Silent p.V781V 0.20 TCGA-D9-A6E9-06 22 30415992 30415992 C T MTMR3 Missense_Mutation p.P782S 0.19 tolerated_low_confidence(0.47) benign(0.001) TCGA-D9-A6E9-06 22 39626234 39626234 C T PDGFB Splice_Site p.X153_splice 0.27 TCGA-D9-A6E9-06 22 50987322 50987323 - A KLHDC7B Nonsense_Mutation p.Y243* 0.53 TCGA-D9-A6E9-06 2 119752126 119752126 G A MARCO 3'UTR 0.16 TCGA-D9-A6E9-06 2 1418242 1418242 C T TPO Missense_Mutation p.P21L 0.26 tolerated(0.14) benign(0.01) TCGA-D9-A6E9-06 2 152510592 152510592 C T NEB Missense_Mutation p.E2277K 0.19 possibly_damaging(0.714) TCGA-D9-A6E9-06 2 158115828 158115828 G A GALNT5 Missense_Mutation p.A412T 0.34 tolerated(0.45) benign(0.011) TCGA-D9-A6E9-06 2 165946984 165946984 G A SCN3A Silent p.T1893T 0.21 TCGA-D9-A6E9-06 2 168104827 168104827 C T XIRP2 Missense_Mutation p.P2309S 0.20 probably_damaging(1) TCGA-D9-A6E9-06 2 170063668 170063668 T C LRP2 Missense_Mutation p.T2188A 0.23 benign(0.103) TCGA-D9-A6E9-06 2 171225751 171225751 G A MYO3B Missense_Mutation p.E279K 0.19 deleterious(0) probably_damaging(0.992) TCGA-D9-A6E9-06 2 172666191 172666191 A C SLC25A12 Missense_Mutation p.N410K 0.31 deleterious(0) probably_damaging(0.985) TCGA-D9-A6E9-06 2 190535171 190535171 C T ASNSD1 Missense_Mutation p.P551S 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A6E9-06 2 201332081 201332081 A G SPATS2L Missense_Mutation p.M306V 0.27 deleterious(0) probably_damaging(0.976) TCGA-D9-A6E9-06 2 203165002 203165002 C T NOP58 Silent p.T438T 0.24 TCGA-D9-A6E9-06 2 207169934 207169934 C T ZDBF2 Missense_Mutation p.L228F 0.34 tolerated(0.55) possibly_damaging(0.587) TCGA-D9-A6E9-06 2 210594984 210594984 C T MAP2 Missense_Mutation p.P1783S 0.19 deleterious(0) probably_damaging(0.998) TCGA-D9-A6E9-06 2 234186290 234186290 G A ATG16L1 Missense_Mutation p.R344H 0.04 deleterious(0) probably_damaging(0.942) TCGA-D9-A6E9-06 2 238275852 238275852 G A COL6A3 Missense_Mutation p.R1660C 0.13 probably_damaging(0.935) TCGA-D9-A6E9-06 2 238283121 238283121 C T COL6A3 Missense_Mutation p.V1205M 0.28 probably_damaging(0.995) TCGA-D9-A6E9-06 2 241405651 241405651 C T GPC1 Missense_Mutation p.L541F 0.33 tolerated(0.18) benign(0.018) TCGA-D9-A6E9-06 2 29455309 29455309 C T ALK Silent p.K831K 0.08 TCGA-D9-A6E9-06 2 30966449 30966449 G A CAPN13 Intron 0.23 TCGA-D9-A6E9-06 2 33525517 33525517 G A LTBP1 Splice_Site p.X1079_splice 0.25 TCGA-D9-A6E9-06 2 46850911 46850911 C T CRIPT Missense_Mutation p.P49L 0.28 deleterious(0) probably_damaging(0.99) TCGA-D9-A6E9-06 2 87085199 87085199 C T CD8B Silent p.K128K 0.24 TCGA-D9-A6E9-06 3 130174366 130174366 G T COL6A5 Missense_Mutation p.G2216W 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.784) TCGA-D9-A6E9-06 3 13860397 13860397 C T WNT7A 3'UTR 0.42 TCGA-D9-A6E9-06 3 197505301 197505301 C T FYTTD1 Missense_Mutation p.P275L 0.29 deleterious(0) possibly_damaging(0.69) TCGA-D9-A6E9-06 3 38354506 38354506 C T SLC22A14 Missense_Mutation p.P321S 0.44 tolerated(0.05) possibly_damaging(0.888) TCGA-D9-A6E9-06 3 38888630 38888630 G A SCN11A Missense_Mutation p.S1644F 0.38 deleterious(0) probably_damaging(0.94) TCGA-D9-A6E9-06 3 41274920 41274920 T G CTNNB1 Missense_Mutation p.D390E 0.36 deleterious(0) possibly_damaging(0.819) TCGA-D9-A6E9-06 3 42774991 42774991 G T CCDC13 Silent p.G494G 0.37 TCGA-D9-A6E9-06 4 1165227 1165227 C T SPON2 Missense_Mutation p.V90I 0.10 deleterious(0.01) benign(0.228) TCGA-D9-A6E9-06 4 38799077 38799077 C T TLR1 Missense_Mutation p.S459N 0.22 tolerated(0.22) benign(0.02) TCGA-D9-A6E9-06 4 5018651 5018651 G A CYTL1 Missense_Mutation p.S80L 0.22 tolerated(0.17) benign(0.133) TCGA-D9-A6E9-06 4 6863824 6863824 G A KIAA0232 Missense_Mutation p.S572N 0.21 tolerated(0.11) benign(0.039) TCGA-D9-A6E9-06 4 69334619 69334619 C T TMPRSS11E Missense_Mutation p.S94F 0.31 deleterious(0) possibly_damaging(0.607) TCGA-D9-A6E9-06 4 79831985 79831987 GAA - BMP2K In_Frame_Del p.E763del 0.33 TCGA-D9-A6E9-06 4 8602996 8602996 G A CPZ Missense_Mutation p.E90K 0.22 tolerated(0.33) benign(0.034) TCGA-D9-A6E9-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.21 tolerated(0.09) possibly_damaging(0.574) TCGA-D9-A6E9-06 5 127448572 127448572 T C SLC12A2 Missense_Mutation p.Y275H 0.23 tolerated(0.13) benign(0.005) TCGA-D9-A6E9-06 5 134002600 134002600 C A SEC24A Missense_Mutation p.P218Q 0.22 tolerated(0.12) possibly_damaging(0.562) TCGA-D9-A6E9-06 5 13788950 13788950 G A DNAH5 Missense_Mutation p.T2841I 0.24 possibly_damaging(0.507) TCGA-D9-A6E9-06 5 140552767 140552767 C T PCDHB7 Silent p.F117F 0.24 TCGA-D9-A6E9-06 5 15928185 15928185 C T FBXL7 Missense_Mutation p.S105F 0.26 tolerated(0.06) benign(0.146) TCGA-D9-A6E9-06 5 169812418 169812418 C T KCNMB1 Missense_Mutation p.G12R 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6E9-06 5 172752932 172752932 A G STC2 Missense_Mutation p.I78T 0.30 tolerated(0.33) probably_damaging(1) TCGA-D9-A6E9-06 5 173156 173156 G A PLEKHG4B Missense_Mutation p.V1043I 0.12 tolerated(0.7) benign(0.001) TCGA-D9-A6E9-06 5 35704661 35704661 G A SPEF2 Missense_Mutation p.E802K 0.10 tolerated(0.7) benign(0.016) TCGA-D9-A6E9-06 5 40981709 40981709 C T C7 3'UTR 0.40 TCGA-D9-A6E9-06 5 90072329 90072329 C T GPR98 Missense_Mutation p.P4155S 0.27 possibly_damaging(0.857) TCGA-D9-A6E9-06 5 95734703 95734703 G A PCSK1 Missense_Mutation p.P490S 0.19 tolerated(0.49) benign(0.008) TCGA-D9-A6E9-06 6 101077016 101077016 G A ASCC3 Missense_Mutation p.S1417F 0.19 deleterious(0) possibly_damaging(0.74) TCGA-D9-A6E9-06 6 110530399 110530399 T G CDC40 Missense_Mutation p.D201E 0.17 tolerated(0.05) benign(0.411) TCGA-D9-A6E9-06 6 121642870 121642870 C T TBC1D32 Missense_Mutation p.E76K 0.12 tolerated(0.08) possibly_damaging(0.724) TCGA-D9-A6E9-06 6 158454697 158454697 C T SYNJ2 Silent p.F232F 0.17 TCGA-D9-A6E9-06 6 167435966 167435966 C T FGFR1OP Missense_Mutation p.L217F 0.32 tolerated(0.4) possibly_damaging(0.482) TCGA-D9-A6E9-06 6 39053868 39053868 C T GLP1R 3'UTR 0.41 TCGA-D9-A6E9-06 6 43752430 43752430 C T VEGFA 3'Flank 0.20 TCGA-D9-A6E9-06 6 44148369 44148369 C T CAPN11 Silent p.F572F 0.15 TCGA-D9-A6E9-06 6 51484000 51484000 C T PKHD1 Missense_Mutation p.S4035N 0.09 tolerated_low_confidence(0.09) benign(0.109) TCGA-D9-A6E9-06 6 84284813 84284813 C T SNAP91 Silent p.E786E 0.33 TCGA-D9-A6E9-06 6 84284814 84284814 T C SNAP91 Missense_Mutation p.E786G 0.33 deleterious(0) probably_damaging(0.979) TCGA-D9-A6E9-06 7 100674883 100674883 T C MUC17 Silent p.G62G 0.26 TCGA-D9-A6E9-06 7 103216125 103216125 C T RELN Silent p.E1391E 0.28 TCGA-D9-A6E9-06 7 113519757 113519757 C T PPP1R3A Missense_Mutation p.G464R 0.18 tolerated(0.07) benign(0.372) TCGA-D9-A6E9-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-D9-A6E9-06 7 141952002 141952002 G A PRSS58 3'UTR 0.12 TCGA-D9-A6E9-06 7 143793105 143793105 G A OR2A12 Missense_Mutation p.R302K 0.21 tolerated(0.34) benign(0.011) TCGA-D9-A6E9-06 7 31015394 31015394 G A GHRHR Silent p.V295V 0.31 TCGA-D9-A6E9-06 7 48349628 48349628 G A ABCA13 Missense_Mutation p.E3136K 0.20 benign(0.114) TCGA-D9-A6E9-06 7 77268639 77268639 C T PTPN12 3'UTR 0.19 TCGA-D9-A6E9-06 8 10469317 10469317 C T RP1L1 Missense_Mutation p.G764E 0.13 possibly_damaging(0.779) TCGA-D9-A6E9-06 8 110980469 110980469 G A KCNV1 Silent p.L451L 0.20 TCGA-D9-A6E9-06 8 121228593 121228593 C T COL14A1 Missense_Mutation p.A534V 0.12 deleterious(0.02) benign(0.014) TCGA-D9-A6E9-06 8 131916174 131916174 G A ADCY8 Silent p.Y585Y 0.31 TCGA-D9-A6E9-06 8 143560777 143560777 C T BAI1 Missense_Mutation p.P552L 0.17 deleterious(0.01) possibly_damaging(0.908) TCGA-D9-A6E9-06 8 143623663 143623663 G A BAI1 Silent p.R1356R 0.26 TCGA-D9-A6E9-06 8 20112428 20112428 C T LZTS1 Missense_Mutation p.D89N 0.12 tolerated(0.54) possibly_damaging(0.51) TCGA-D9-A6E9-06 8 22013870 22013870 C A LGI3 Silent p.L62L 0.30 TCGA-D9-A6E9-06 8 24776195 24776195 C G NEFM 3'UTR 0.11 TCGA-D9-A6E9-06 8 3224628 3224628 C T CSMD1 Missense_Mutation p.G1014E 0.20 probably_damaging(1) TCGA-D9-A6E9-06 8 49986799 49986799 C T C8orf22 Missense_Mutation p.P47L 0.19 tolerated(0.11) benign(0.007) TCGA-D9-A6E9-06 8 71574087 71574087 G A LACTB2 Silent p.I56I 0.30 TCGA-D9-A6E9-06 8 80567247 80567247 G A STMN2 Missense_Mutation p.E144K 0.27 deleterious(0.01) possibly_damaging(0.52) TCGA-D9-A6E9-06 8 87242418 87242418 C T SLC7A13 Missense_Mutation p.G30E 0.14 deleterious(0) probably_damaging(0.997) TCGA-D9-A6E9-06 9 100117249 100117249 C T CCDC180 Nonsense_Mutation p.Q1119* 0.35 TCGA-D9-A6E9-06 9 104448921 104448921 C T GRIN3A Missense_Mutation p.E421K 0.41 deleterious(0.01) benign(0.008) TCGA-D9-A6E9-06 9 123779713 123779713 G A C5 Missense_Mutation p.S598F 0.34 deleterious(0) probably_damaging(0.996) TCGA-D9-A6E9-06 9 75445576 75445576 G A TMC1 Silent p.K746K 0.41 TCGA-D9-A6E9-06 9 84532699 84532699 C T SPATA31D5P RNA 0.41 TCGA-D9-A6E9-06 X 101818209 101818209 G A NXF4 RNA 0.10 TCGA-D9-A6E9-06 X 104512071 104512071 G A IL1RAPL2 Missense_Mutation p.E182K 0.12 tolerated(0.13) probably_damaging(0.981) TCGA-D9-A6E9-06 X 107802340 107802340 G A COL4A5 Missense_Mutation p.G63E 0.32 unknown(0) TCGA-D9-A6E9-06 X 130215847 130215847 G A ARHGAP36 Missense_Mutation p.E70K 0.29 tolerated(0.08) probably_damaging(0.995) TCGA-D9-A6E9-06 X 130411075 130411075 C T IGSF1 Missense_Mutation p.E821K 0.31 tolerated(0.06) probably_damaging(0.987) TCGA-D9-A6E9-06 X 131203517 131203517 G A MST4 Nonsense_Mutation p.W203* 0.38 TCGA-D9-A6E9-06 X 136112393 136112393 C T GPR101 Missense_Mutation p.E481K 0.11 tolerated(0.26) benign(0.005) TCGA-D9-A6E9-06 X 140994040 140994040 T C MAGEC1 Missense_Mutation p.F284L 0.32 tolerated_low_confidence(0.42) benign(0) TCGA-D9-A6E9-06 X 150912076 150912076 C T CNGA2 Silent p.I367I 0.16 TCGA-D9-A6E9-06 X 152936209 152936209 G A PNCK Missense_Mutation p.T378I 0.08 deleterious(0.03) benign(0.143) TCGA-D9-A6E9-06 X 153409736 153409736 G A OPN1LW 5'UTR 0.18 TCGA-D9-A6E9-06 X 153409737 153409737 G A OPN1LW 5'UTR 0.18 TCGA-D9-A6E9-06 X 27998063 27998063 G C DCAF8L1 Missense_Mutation p.F463L 0.21 deleterious(0) possibly_damaging(0.694) TCGA-D9-A6E9-06 X 3240964 3240964 G A MXRA5 Missense_Mutation p.S921F 0.34 deleterious(0.01) possibly_damaging(0.797) TCGA-D9-A6E9-06 X 47102868 47102868 G T USP11 Nonsense_Mutation p.E596* 0.24 TCGA-D9-A6E9-06 X 48206956 48206956 C T SSX3 Missense_Mutation p.E184K 0.14 deleterious(0.03) probably_damaging(0.96) TCGA-D9-A6E9-06 X 48887752 48887752 C T TFE3 Missense_Mutation p.D549N 0.11 deleterious(0) possibly_damaging(0.831) TCGA-D9-A6E9-06 X 49236844 49236844 G A GAGE2B Missense_Mutation p.G5E 0.23 probably_damaging(0.977) TCGA-D9-A6E9-06 X 49855113 49855113 C T CLCN5 Silent p.S695S 0.37 TCGA-D9-A6E9-06 X 50377610 50377610 C T SHROOM4 Missense_Mutation p.G488E 0.32 tolerated(1) benign(0.002) TCGA-D9-A6E9-06 X 69478475 69478475 A T P2RY4 Missense_Mutation p.S334T 0.12 tolerated(0.16) benign(0.003) TCGA-D9-A6E9-06 X 70327506 70327506 C T IL2RG 3'UTR 0.27 TCGA-D9-A6E9-06 X 83128141 83128141 C T CYLC1 Missense_Mutation p.P142L 0.23 tolerated(0.36) benign(0.197) TCGA-D9-A6EA-06 10 104572878 104572878 C T WBP1L Silent p.I294I 0.81 TCGA-D9-A6EA-06 10 105800141 105800141 G A COL17A1 Missense_Mutation p.P910L 0.85 probably_damaging(0.987) TCGA-D9-A6EA-06 10 11504404 11504404 G A USP6NL 3'UTR 0.59 TCGA-D9-A6EA-06 10 129875949 129875949 C T PTPRE Silent p.I598I 0.89 TCGA-D9-A6EA-06 10 22700094 22700094 G A SPAG6 Silent p.E483E 0.83 TCGA-D9-A6EA-06 10 23319624 23319624 G A ARMC3 Nonsense_Mutation p.W715* 0.86 TCGA-D9-A6EA-06 10 26589954 26589954 G A GAD2 3'UTR 0.93 TCGA-D9-A6EA-06 10 46965077 46965077 C T SYT15 Missense_Mutation p.D290N 0.33 tolerated(0.3) benign(0.028) TCGA-D9-A6EA-06 10 48390604 48390604 C T RBP3 Missense_Mutation p.E92K 0.83 deleterious(0.04) probably_damaging(0.981) TCGA-D9-A6EA-06 10 49482636 49482636 G T FRMPD2 5'UTR 0.66 TCGA-D9-A6EA-06 10 71690233 71690233 G A COL13A1 Silent p.V525V 0.77 TCGA-D9-A6EA-06 10 73044523 73044523 G A UNC5B Silent p.V117V 0.74 TCGA-D9-A6EA-06 10 84745020 84745020 G A NRG3 Missense_Mutation p.E584K 0.86 tolerated(0.06) possibly_damaging(0.763) TCGA-D9-A6EA-06 10 88417909 88417909 C T OPN4 Silent p.L148L 0.86 TCGA-D9-A6EA-06 10 95552643 95552643 C T LGI1 Missense_Mutation p.S216L 0.81 tolerated(0.6) benign(0.001) TCGA-D9-A6EA-06 10 96454741 96454741 C T CYP2C18 Silent p.F183F 0.78 TCGA-D9-A6EA-06 10 98469612 98469612 C T PIK3AP1 Missense_Mutation p.G48S 0.81 tolerated(1) benign(0.004) TCGA-D9-A6EA-06 11 1081659 1081659 G A MUC2 Silent p.G529G 0.79 TCGA-D9-A6EA-06 11 108235906 108235906 C G ATM Missense_Mutation p.T2983S 0.06 tolerated(0.14) benign(0.117) TCGA-D9-A6EA-06 11 110124729 110124729 C T RDX Missense_Mutation p.E301K 0.74 deleterious(0) benign(0.095) TCGA-D9-A6EA-06 11 111229570 111229570 T A POU2AF1 Missense_Mutation p.E30D 0.62 deleterious(0.01) possibly_damaging(0.822) TCGA-D9-A6EA-06 11 112070435 112070435 G A BCO2 Silent p.K250K 0.22 TCGA-D9-A6EA-06 11 114273623 114273623 C T RBM7 Silent p.S111S 0.14 TCGA-D9-A6EA-06 11 119029362 119029362 C T ABCG4 Silent p.F421F 0.20 TCGA-D9-A6EA-06 11 120178263 120178263 G A POU2F3 Missense_Mutation p.R284K 0.67 deleterious(0.01) benign(0.002) TCGA-D9-A6EA-06 11 121061506 121061506 G A TECTA Silent p.T2153T 0.50 TCGA-D9-A6EA-06 11 121483463 121483463 A C SORL1 Missense_Mutation p.N1781H 0.24 tolerated(0.12) benign(0.396) TCGA-D9-A6EA-06 11 123847718 123847718 G A OR10S1 Silent p.L227L 0.60 TCGA-D9-A6EA-06 11 124189785 124189785 G A OR8D2 Silent p.F103F 0.20 TCGA-D9-A6EA-06 11 124757395 124757395 C T ROBO4 Missense_Mutation p.G686E 0.29 deleterious(0.02) benign(0.059) TCGA-D9-A6EA-06 11 126073211 126073211 T A RPUSD4 3'UTR 0.61 TCGA-D9-A6EA-06 11 1270358 1270358 G A MUC5B Missense_Mutation p.G4083E 0.17 unknown(0) TCGA-D9-A6EA-06 11 128332376 128332376 G A ETS1 Silent p.I446I 0.31 TCGA-D9-A6EA-06 11 17436140 17436140 G A ABCC8 Missense_Mutation p.A770V 0.71 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EA-06 11 2161903 2161903 G A IGF2 Intron 0.92 TCGA-D9-A6EA-06 11 30253528 30253528 A T FSHB Missense_Mutation p.T27S 0.67 tolerated(0.15) possibly_damaging(0.821) TCGA-D9-A6EA-06 11 32720837 32720837 T G CCDC73 Missense_Mutation p.K117T 0.78 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 11 40137302 40137302 C T LRRC4C Missense_Mutation p.E181K 0.24 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EA-06 11 404557 404557 C T PKP3 Silent p.F794F 0.67 TCGA-D9-A6EA-06 11 4471397 4471397 C T OR52K2 Silent p.I276I 0.17 TCGA-D9-A6EA-06 11 4566790 4566790 C T OR52M1 Missense_Mutation p.R124C 0.21 deleterious(0.01) benign(0.066) TCGA-D9-A6EA-06 11 45672166 45672166 C T CHST1 Missense_Mutation p.R103H 0.22 tolerated(0.11) benign(0.011) TCGA-D9-A6EA-06 11 47399959 47399959 G A SPI1 5'Flank 0.90 TCGA-D9-A6EA-06 11 51515514 51515514 A C OR4C46 Missense_Mutation p.N78T 0.23 deleterious_low_confidence(0.02) benign(0) TCGA-D9-A6EA-06 11 5373002 5373002 G A OR51B6 Missense_Mutation p.E89K 0.67 tolerated(0.06) benign(0.005) TCGA-D9-A6EA-06 11 55136252 55136252 C T OR4A15 Missense_Mutation p.S298F 0.18 tolerated_low_confidence(0.73) benign(0.024) TCGA-D9-A6EA-06 11 55136373 55136373 G A OR4A15 Silent p.G338G 0.60 TCGA-D9-A6EA-06 11 55735475 55735475 G A OR10AG1 Silent p.F155F 0.17 TCGA-D9-A6EA-06 11 55798066 55798066 C T OR5AS1 Missense_Mutation p.P58S 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EA-06 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.27 TCGA-D9-A6EA-06 11 55927275 55927275 G A OR8K5 Silent p.V173V 0.62 TCGA-D9-A6EA-06 11 56757009 56757009 G A OR5AK2 Silent p.L207L 0.21 TCGA-D9-A6EA-06 11 57886005 57886005 G A OR9I1 Silent p.V304V 0.22 TCGA-D9-A6EA-06 11 57886109 57886109 C T OR9I1 Missense_Mutation p.E270K 0.16 tolerated(0.23) probably_damaging(1) TCGA-D9-A6EA-06 11 58125748 58125748 G A OR5B17 Silent p.S265S 0.51 TCGA-D9-A6EA-06 11 59271750 59271750 G A OR4D11 Silent p.R234R 0.67 TCGA-D9-A6EA-06 11 61026240 61026240 G A VWCE Silent p.T925T 0.70 TCGA-D9-A6EA-06 11 61026739 61026739 C T VWCE Missense_Mutation p.G759E 0.21 deleterious_low_confidence(0.04) benign(0.011) TCGA-D9-A6EA-06 11 61026779 61026779 G A VWCE Silent p.L746L 0.20 TCGA-D9-A6EA-06 11 62502996 62502996 C T TTC9C Silent p.A127A 0.21 TCGA-D9-A6EA-06 11 63175670 63175670 G A SLC22A9 Missense_Mutation p.E459K 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 11 64359247 64359247 G A SLC22A12 Silent p.L73L 0.52 TCGA-D9-A6EA-06 11 64564326 64564326 G A MAP4K2 Silent p.L483L 0.19 TCGA-D9-A6EA-06 11 6472141 6472141 G A TRIM3 Silent p.A617A 0.59 TCGA-D9-A6EA-06 11 64882974 64882974 G A TM7SF2 Missense_Mutation p.G334R 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 11 64981870 64981870 G A CAPN1 3'Flank 0.12 TCGA-D9-A6EA-06 11 65123859 65123859 C T TIGD3 Nonsense_Mutation p.Q194* 0.23 TCGA-D9-A6EA-06 11 65294493 65294493 C T SCYL1 Missense_Mutation p.P252S 0.63 deleterious(0.03) benign(0.411) TCGA-D9-A6EA-06 11 65396306 65396306 C T PCNXL3 Silent p.F1276F 0.61 TCGA-D9-A6EA-06 11 66083110 66083110 G A CD248 Silent p.A463A 0.65 TCGA-D9-A6EA-06 11 67226103 67226103 G A CABP4 Silent p.E267E 0.65 TCGA-D9-A6EA-06 11 67226104 67226104 T G CABP4 Missense_Mutation p.F268V 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EA-06 11 68326138 68326138 G T PPP6R3 Missense_Mutation p.R279L 0.63 deleterious(0) benign(0.421) TCGA-D9-A6EA-06 11 6867415 6867415 C T OR10A5 Missense_Mutation p.P168S 0.65 deleterious(0.05) possibly_damaging(0.764) TCGA-D9-A6EA-06 11 70333016 70333016 C T SHANK2 Missense_Mutation p.E1129K 0.21 deleterious(0) benign(0.013) TCGA-D9-A6EA-06 11 7063791 7063791 C T NLRP14 Silent p.I178I 0.65 TCGA-D9-A6EA-06 11 72535790 72535790 G A ATG16L2 Missense_Mutation p.R300K 0.23 tolerated(0.16) benign(0.08) TCGA-D9-A6EA-06 11 73686155 73686155 G A UCP2 Missense_Mutation p.S276F 0.33 deleterious(0) probably_damaging(0.962) TCGA-D9-A6EA-06 11 7439335 7439335 C T SYT9 Missense_Mutation p.S438F 0.24 tolerated(0.72) possibly_damaging(0.79) TCGA-D9-A6EA-06 11 76833641 76833641 C T CAPN5 Silent p.I541I 0.55 TCGA-D9-A6EA-06 11 94231318 94231318 C T ANKRD49 Nonsense_Mutation p.R114* 0.76 TCGA-D9-A6EA-06 12 100806615 100806615 C A SLC17A8 Silent p.S418S 0.32 TCGA-D9-A6EA-06 12 101017539 101017539 C T GAS2L3 Missense_Mutation p.P319L 0.31 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 12 10224058 10224058 G A CLEC1A Silent p.I239I 0.61 TCGA-D9-A6EA-06 12 102295138 102295138 C T DRAM1 Missense_Mutation p.P90L 0.60 tolerated(0.33) benign(0.098) TCGA-D9-A6EA-06 12 104015884 104015884 C T STAB2 Missense_Mutation p.S161L 0.16 deleterious(0.03) benign(0.169) TCGA-D9-A6EA-06 12 104063316 104063316 C T STAB2 Intron 0.23 TCGA-D9-A6EA-06 12 110318186 110318186 G A GLTP 5'UTR 0.50 TCGA-D9-A6EA-06 12 110782767 110782767 C T ATP2A2 Silent p.F866F 0.23 TCGA-D9-A6EA-06 12 113306308 113306308 A C RPH3A Missense_Mutation p.K173T 0.39 tolerated(0.18) benign(0.002) TCGA-D9-A6EA-06 12 113306309 113306309 G A RPH3A Silent p.K173K 0.35 TCGA-D9-A6EA-06 12 120150489 120150489 G A CIT Missense_Mutation p.P1531S 0.53 deleterious(0.01) benign(0.114) TCGA-D9-A6EA-06 12 121099006 121099006 C T CABP1 Nonsense_Mutation p.R358* 0.12 TCGA-D9-A6EA-06 12 12232540 12232540 G A BCL2L14 Missense_Mutation p.E101K 0.35 tolerated(0.1) probably_damaging(0.982) TCGA-D9-A6EA-06 12 124228357 124228357 C T ATP6V0A2 Missense_Mutation p.S355L 0.59 deleterious(0.01) probably_damaging(0.96) TCGA-D9-A6EA-06 12 124399018 124399018 G A DNAH10 Missense_Mutation p.D3381N 0.18 benign(0.098) TCGA-D9-A6EA-06 12 126138587 126138587 G A TMEM132B Silent p.G856G 0.58 TCGA-D9-A6EA-06 12 13214578 13214578 T A KIAA1467 Missense_Mutation p.L201H 0.65 tolerated(0.57) benign(0.001) TCGA-D9-A6EA-06 12 133733157 133733157 T A ZNF10 Missense_Mutation p.F442Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 12 18716344 18716344 G A PIK3C2G Missense_Mutation p.E1231K 0.28 tolerated(0.13) benign(0.008) TCGA-D9-A6EA-06 12 25297576 25297576 C T CASC1 Missense_Mutation p.G242E 0.32 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EA-06 12 2795376 2795376 G A CACNA1C Missense_Mutation p.D1957N 0.51 tolerated_low_confidence(0.5) benign(0) TCGA-D9-A6EA-06 12 28459718 28459718 C T CCDC91 Missense_Mutation p.P104L 0.25 deleterious(0) possibly_damaging(0.798) TCGA-D9-A6EA-06 12 301808 301808 A T SLC6A12 Missense_Mutation p.F513I 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EA-06 12 33532873 33532873 C T SYT10 Missense_Mutation p.G465E 0.26 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EA-06 12 33592331 33592331 C T SYT10 Missense_Mutation p.G43S 0.48 tolerated(0.18) benign(0.001) TCGA-D9-A6EA-06 12 41422955 41422955 T A CNTN1 Missense_Mutation p.Y972N 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EA-06 12 4479668 4479668 C T FGF23 Missense_Mutation p.M199I 0.27 tolerated(0.68) benign(0.002) TCGA-D9-A6EA-06 12 4479734 4479734 G A FGF23 Silent p.H177H 0.56 TCGA-D9-A6EA-06 12 48368104 48368104 C T COL2A1 Missense_Mutation p.G1362E 0.50 unknown(0) TCGA-D9-A6EA-06 12 48376352 48376352 G A COL2A1 Missense_Mutation p.P745L 0.22 probably_damaging(0.999) TCGA-D9-A6EA-06 12 49488070 49488070 C T DHH Missense_Mutation p.D76N 0.26 tolerated(0.07) benign(0.403) TCGA-D9-A6EA-06 12 49582830 49582830 G A TUBA1A 5'UTR 0.29 TCGA-D9-A6EA-06 12 53170596 53170596 T C KRT76 Silent p.V160V 0.51 TCGA-D9-A6EA-06 12 53509922 53509922 T A SOAT2 Silent p.A250A 0.39 TCGA-D9-A6EA-06 12 54936445 54936445 G T NCKAP1L Silent p.V1120V 0.25 TCGA-D9-A6EA-06 12 55725806 55725806 G A OR6C3 Missense_Mutation p.E108K 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D9-A6EA-06 12 56563689 56563689 G A SMARCC2 Nonsense_Mutation p.R776* 0.33 TCGA-D9-A6EA-06 12 56563690 56563690 G A SMARCC2 Silent p.P775P 0.33 TCGA-D9-A6EA-06 12 57619023 57619023 C T NXPH4 Silent p.F140F 0.50 TCGA-D9-A6EA-06 12 58016845 58016845 C T SLC26A10 Silent p.S326S 0.24 TCGA-D9-A6EA-06 12 58122078 58122078 C T AGAP2-AS1 3'UTR 0.45 TCGA-D9-A6EA-06 12 58204181 58204181 G A AVIL Missense_Mutation p.P238S 0.49 tolerated(0.11) benign(0.035) TCGA-D9-A6EA-06 12 5848488 5848488 C T ANO2 Missense_Mutation p.E473K 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-D9-A6EA-06 12 6135190 6135190 C T VWF Missense_Mutation p.G997E 0.56 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 12 6639007 6639007 C T NCAPD2 Silent p.L1240L 0.32 TCGA-D9-A6EA-06 12 665887 665887 C T B4GALNT3 Silent p.V745V 0.64 TCGA-D9-A6EA-06 12 66603284 66603284 C T IRAK3 Missense_Mutation p.P122L 0.51 tolerated(0.05) benign(0.03) TCGA-D9-A6EA-06 12 70974854 70974854 C T PTPRB Missense_Mutation p.G847E 0.62 tolerated(0.16) possibly_damaging(0.868) TCGA-D9-A6EA-06 12 72388284 72388284 C T TPH2 Missense_Mutation p.S336L 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 12 7310180 7310180 C T CLSTN3 Missense_Mutation p.R875C 0.24 deleterious(0) possibly_damaging(0.677) TCGA-D9-A6EA-06 12 7475048 7475048 G A ACSM4 Missense_Mutation p.G346R 0.50 deleterious(0) probably_damaging(0.977) TCGA-D9-A6EA-06 12 7475049 7475049 G T ACSM4 Missense_Mutation p.G346V 0.48 deleterious(0.01) probably_damaging(0.976) TCGA-D9-A6EA-06 12 88912640 88912640 C T KITLG Missense_Mutation p.S66N 0.30 tolerated(1) benign(0.017) TCGA-D9-A6EA-06 12 88912642 88912642 T C KITLG Silent p.P65P 0.29 TCGA-D9-A6EA-06 12 97339513 97339513 C T NEDD1 Missense_Mutation p.S573L 0.72 deleterious(0) probably_damaging(0.921) TCGA-D9-A6EA-06 12 97339573 97339573 C T NEDD1 Missense_Mutation p.S593F 0.62 deleterious(0) possibly_damaging(0.902) TCGA-D9-A6EA-06 13 101315308 101315308 G A TMTC4 Silent p.Y154Y 0.20 TCGA-D9-A6EA-06 13 101315335 101315335 G A TMTC4 Silent p.F145F 0.20 TCGA-D9-A6EA-06 13 101320943 101320943 G C TMTC4 Missense_Mutation p.P37A 0.19 tolerated(0.11) benign(0.005) TCGA-D9-A6EA-06 13 101944378 101944378 C T NALCN Missense_Mutation p.G337E 0.21 deleterious(0.02) possibly_damaging(0.885) TCGA-D9-A6EA-06 13 23913568 23913568 G A SACS Nonsense_Mutation p.Q1483* 0.90 TCGA-D9-A6EA-06 13 25281188 25281188 G A ATP12A Missense_Mutation p.G739R 0.73 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 13 28519450 28519450 C T ATP5EP2 Silent p.I18I 0.58 TCGA-D9-A6EA-06 13 36900691 36900691 A T SPG20 Intron 0.93 TCGA-D9-A6EA-06 13 92101078 92101078 G A GPC5 Missense_Mutation p.R76K 0.74 tolerated(0.58) benign(0.078) TCGA-D9-A6EA-06 13 97639949 97639949 C T OXGR1 Missense_Mutation p.G22E 0.34 tolerated(1) benign(0.002) TCGA-D9-A6EA-06 14 105411077 105411077 G A AHNAK2 Missense_Mutation p.L3571F 0.24 possibly_damaging(0.765) TCGA-D9-A6EA-06 14 105411078 105411078 G A AHNAK2 Silent p.D3570D 0.24 TCGA-D9-A6EA-06 14 106091257 106091257 C T IGHG4 Missense_Mutation p.E213K 0.28 tolerated(0.41) benign(0.036) TCGA-D9-A6EA-06 14 106307466 106307466 G A IGHD Silent p.F191F 0.63 TCGA-D9-A6EA-06 14 20942962 20942962 C T PNP Silent p.L106L 0.56 TCGA-D9-A6EA-06 14 21359841 21359841 G A RNASE3 Intron 0.17 TCGA-D9-A6EA-06 14 21502011 21502011 G A RP11-998D10.1 Nonsense_Mutation p.W116* 0.59 TCGA-D9-A6EA-06 14 21623858 21623858 G A OR5AU1 Silent p.P109P 0.21 TCGA-D9-A6EA-06 14 22471696 22471696 T G TRAV18 Nonsense_Mutation p.L40* 0.58 TCGA-D9-A6EA-06 14 22749563 22749563 C T TRAV38-2DV8 Missense_Mutation p.S94F 0.25 tolerated(0.07) benign(0.139) TCGA-D9-A6EA-06 14 23874314 23874314 G A MYH6 Silent p.L175L 0.26 TCGA-D9-A6EA-06 14 23890171 23890171 A C MYH7 Missense_Mutation p.L1111R 0.20 deleterious(0) probably_damaging(0.925) TCGA-D9-A6EA-06 14 24109098 24109098 G A DHRS2 Nonsense_Mutation p.W138* 0.26 TCGA-D9-A6EA-06 14 24587348 24587348 C T DCAF11 Silent p.F187F 0.58 TCGA-D9-A6EA-06 14 37132354 37132354 A C PAX9 Missense_Mutation p.H86P 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EA-06 14 47351397 47351397 C T MDGA2 Missense_Mutation p.E756K 0.54 tolerated(0.23) possibly_damaging(0.765) TCGA-D9-A6EA-06 14 68008659 68008659 T C PLEKHH1 Silent p.L25L 0.40 TCGA-D9-A6EA-06 14 70633954 70633954 A T SLC8A3 Missense_Mutation p.S396T 0.29 tolerated(0.48) benign(0.05) TCGA-D9-A6EA-06 14 72137929 72137929 C T SIPA1L1 Silent p.F783F 0.31 TCGA-D9-A6EA-06 14 73716721 73716721 C - PAPLN Frame_Shift_Del p.K123Rfs*76 0.23 TCGA-D9-A6EA-06 14 74971538 74971538 C T LTBP2 Missense_Mutation p.G1466R 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 14 75643335 75643335 G A TMED10 5'Flank 0.60 TCGA-D9-A6EA-06 14 88477763 88477763 G A GPR65 Missense_Mutation p.G191D 0.55 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EA-06 14 91779784 91779784 C T CCDC88C Silent p.L792L 0.54 TCGA-D9-A6EA-06 14 92088231 92088231 G A CATSPERB Missense_Mutation p.P661S 0.53 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EA-06 15 102346761 102346761 C T OR4F6 Missense_Mutation p.P280L 0.45 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-D9-A6EA-06 15 20659001 20659001 C T HERC2P3 RNA 0.24 TCGA-D9-A6EA-06 15 22383448 22383448 C T OR4N4 3'UTR 0.14 TCGA-D9-A6EA-06 15 23261864 23261864 G A GOLGA8I Missense_Mutation p.V326I 0.33 deleterious(0.03) probably_damaging(0.925) TCGA-D9-A6EA-06 15 25227242 25227242 C T SNRPN 3'Flank 0.53 TCGA-D9-A6EA-06 15 25446407 25446407 G A SNORD115-19 5'Flank 0.36 TCGA-D9-A6EA-06 15 25490534 25490534 C T SNORD115-40 3'Flank 0.52 TCGA-D9-A6EA-06 15 34356466 34356466 G A CHRM5 Silent p.K516K 0.53 TCGA-D9-A6EA-06 15 36950061 36950061 C T C15orf41 Missense_Mutation p.R101W 0.52 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EA-06 15 37387812 37387812 G A MEIS2 Missense_Mutation p.R131C 0.47 deleterious(0) benign(0.143) TCGA-D9-A6EA-06 15 42454661 42454661 G A VPS39 Missense_Mutation p.R732W 0.23 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EA-06 15 42742291 42742291 G A ZNF106 Nonsense_Mutation p.Q704* 0.38 TCGA-D9-A6EA-06 15 43815622 43815622 G A MAP1A Missense_Mutation p.D651N 0.30 probably_damaging(0.999) TCGA-D9-A6EA-06 15 45415186 45415186 G A DUOXA1 Silent p.P9P 0.29 TCGA-D9-A6EA-06 15 48591433 48591433 G A SLC12A1 Nonsense_Mutation p.W1019* 0.56 TCGA-D9-A6EA-06 15 48777607 48777607 C T FBN1 Missense_Mutation p.G1226R 0.46 probably_damaging(0.998) TCGA-D9-A6EA-06 15 49716677 49716677 A G FGF7 Silent p.G61G 0.41 TCGA-D9-A6EA-06 15 50168586 50168586 G A ATP8B4 Silent p.I972I 0.47 TCGA-D9-A6EA-06 15 51293309 51293309 C T AP4E1 Missense_Mutation p.S1061F 0.33 deleterious(0.01) possibly_damaging(0.793) TCGA-D9-A6EA-06 15 51510800 51510800 G A CYP19A1 Silent p.L227L 0.43 TCGA-D9-A6EA-06 15 52668714 52668714 G A MYO5A Silent p.F750F 0.47 TCGA-D9-A6EA-06 15 55790616 55790616 C T DYX1C1 5'UTR 0.38 TCGA-D9-A6EA-06 15 69561299 69561299 G A GLCE Missense_Mutation p.E524K 0.32 tolerated(0.5) benign(0.338) TCGA-D9-A6EA-06 15 79083524 79083524 G A ADAMTS7 Silent p.I287I 0.26 TCGA-D9-A6EA-06 15 81271602 81271602 G A MESDC2 Silent p.S221S 0.31 TCGA-D9-A6EA-06 15 83218370 83218370 A T CPEB1 Missense_Mutation p.F413L 0.28 deleterious(0) benign(0.373) TCGA-D9-A6EA-06 15 83935762 83935762 G A BNC1 Silent p.S87S 0.32 TCGA-D9-A6EA-06 15 86697660 86697660 G A AGBL1 Splice_Site p.X42_splice 0.56 TCGA-D9-A6EA-06 15 89398252 89398252 C T ACAN Silent p.F812F 0.25 TCGA-D9-A6EA-06 15 89398253 89398253 C T ACAN Missense_Mutation p.P813S 0.24 tolerated(0.36) benign(0) TCGA-D9-A6EA-06 15 89401043 89401043 C T ACAN Missense_Mutation p.P1743S 0.59 deleterious(0) benign(0.264) TCGA-D9-A6EA-06 15 90146076 90146076 C G TICRR Missense_Mutation p.L873V 0.48 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A6EA-06 15 90349680 90349680 G A ANPEP Silent p.P45P 0.45 TCGA-D9-A6EA-06 15 90349681 90349681 G A ANPEP Missense_Mutation p.P45L 0.45 tolerated(0.09) benign(0) TCGA-D9-A6EA-06 15 91420205 91420205 T A FURIN Missense_Mutation p.I151N 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EA-06 15 91448630 91448630 C T MAN2A2 Silent p.V94V 0.57 TCGA-D9-A6EA-06 16 11375182 11375182 G A PRM1 5'UTR 0.56 TCGA-D9-A6EA-06 16 1254293 1254293 G A CACNA1H Silent p.R762R 0.52 TCGA-D9-A6EA-06 16 1255221 1255221 C T CACNA1H Silent p.I853I 0.52 TCGA-D9-A6EA-06 16 14041539 14041539 C T ERCC4 Missense_Mutation p.P696S 0.52 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 16 14958499 14958499 C T NOMO1 Missense_Mutation p.P485S 0.23 tolerated(0.81) benign(0.001) TCGA-D9-A6EA-06 16 14958500 14958500 C A NOMO1 Missense_Mutation p.P485H 0.23 tolerated(0.12) benign(0.235) TCGA-D9-A6EA-06 16 15122737 15122737 C T PDXDC1 Missense_Mutation p.P403S 0.14 tolerated(0.84) benign(0.005) TCGA-D9-A6EA-06 16 20557780 20557780 A T ACSM2B Missense_Mutation p.V372D 0.27 tolerated(0.2) probably_damaging(0.976) TCGA-D9-A6EA-06 16 20651903 20651903 G A ACSM1 Silent p.I332I 0.50 TCGA-D9-A6EA-06 16 20673166 20673166 A T ACSM1 Missense_Mutation p.F314L 0.23 tolerated(0.73) benign(0.004) TCGA-D9-A6EA-06 16 20970595 20970595 A G DNAH3 Silent p.L3578L 0.45 TCGA-D9-A6EA-06 16 21060949 21060949 A G DNAH3 Missense_Mutation p.F1468L 0.52 deleterious(0.01) probably_damaging(0.914) TCGA-D9-A6EA-06 16 21245186 21245186 G A ANKS4B Missense_Mutation p.G43E 0.48 deleterious(0) probably_damaging(0.963) TCGA-D9-A6EA-06 16 2376021 2376021 G A ABCA3 Silent p.I103I 0.52 TCGA-D9-A6EA-06 16 24372986 24372986 C T CACNG3 Silent p.I250I 0.60 TCGA-D9-A6EA-06 16 2836100 2836100 C T PRSS33 Silent p.R23R 0.42 TCGA-D9-A6EA-06 16 28844396 28844396 C T ATXN2L Missense_Mutation p.S559F 0.35 deleterious(0) possibly_damaging(0.773) TCGA-D9-A6EA-06 16 28925686 28925686 G A RABEP2 Silent p.G255G 0.38 TCGA-D9-A6EA-06 16 29675913 29675913 C T SPN Silent p.L288L 0.50 TCGA-D9-A6EA-06 16 30666294 30666294 C T PRR14 Missense_Mutation p.P335S 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 16 31072631 31072631 C T ZNF668 Missense_Mutation p.E563K 0.54 tolerated(0.61) benign(0.004) TCGA-D9-A6EA-06 16 31098880 31098880 T G RP11-196G11.1 Missense_Mutation p.T149P 0.41 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D9-A6EA-06 16 3254555 3254555 C T OR1F1 Silent p.F103F 0.38 TCGA-D9-A6EA-06 16 48234262 48234262 C T ABCC11 Silent p.G669G 0.39 TCGA-D9-A6EA-06 16 4944542 4944542 C T PPL Silent p.G440G 0.44 TCGA-D9-A6EA-06 16 4944606 4944606 C T PPL Missense_Mutation p.R419Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 16 50338354 50338354 G A ADCY7 Missense_Mutation p.M484I 0.40 deleterious(0.01) benign(0.11) TCGA-D9-A6EA-06 16 5061218 5061219 - G SEC14L5 Frame_Shift_Ins p.P643Afs*10 0.26 TCGA-D9-A6EA-06 16 50707490 50707490 G A SNX20 Missense_Mutation p.R260W 0.30 deleterious(0.04) possibly_damaging(0.871) TCGA-D9-A6EA-06 16 58537757 58537757 C T NDRG4 Missense_Mutation p.P78L 0.31 deleterious(0.04) probably_damaging(0.966) TCGA-D9-A6EA-06 16 58537758 58537758 C T NDRG4 Silent p.P78P 0.31 TCGA-D9-A6EA-06 16 67266055 67266055 G A FHOD1 Missense_Mutation p.P697S 0.48 tolerated(0.76) probably_damaging(0.966) TCGA-D9-A6EA-06 16 67266056 67266056 G A FHOD1 Silent p.D696D 0.48 TCGA-D9-A6EA-06 16 71798560 71798560 T A AP1G1 Missense_Mutation p.I273L 0.47 tolerated(0.39) benign(0.198) TCGA-D9-A6EA-06 16 75563857 75563857 A T CHST5 Missense_Mutation p.F142L 0.54 tolerated(1) benign(0.002) TCGA-D9-A6EA-06 16 77325284 77325284 C T ADAMTS18 Missense_Mutation p.R1094Q 0.54 deleterious(0.02) possibly_damaging(0.905) TCGA-D9-A6EA-06 16 9858629 9858629 G A GRIN2A Silent p.F924F 0.32 TCGA-D9-A6EA-06 17 10397942 10397942 C T MYH1 Missense_Mutation p.E1839K 0.90 deleterious(0) possibly_damaging(0.5) TCGA-D9-A6EA-06 17 10428585 10428585 C T MYH2 Missense_Mutation p.E1540K 0.77 deleterious(0) possibly_damaging(0.835) TCGA-D9-A6EA-06 17 12656627 12656627 C T MYOCD Silent p.V674V 0.85 TCGA-D9-A6EA-06 17 18023639 18023639 G A MYO15A Missense_Mutation p.D509N 0.92 possibly_damaging(0.539) TCGA-D9-A6EA-06 17 1936816 1936816 C T DPH1 Missense_Mutation p.R32C 0.87 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EA-06 17 27187638 27187638 C T ERAL1 3'UTR 0.94 TCGA-D9-A6EA-06 17 33520597 33520597 G A SLC35G3 Missense_Mutation p.P244S 0.86 tolerated(0.07) benign(0.359) TCGA-D9-A6EA-06 17 33767727 33767727 C T SLFN13 Missense_Mutation p.E861K 0.87 deleterious(0) probably_damaging(0.985) TCGA-D9-A6EA-06 17 3567173 3567173 C T TAX1BP3 Missense_Mutation p.G82S 0.89 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 17 39406380 39406380 G A KRTAP9-4 Silent p.E136E 0.54 TCGA-D9-A6EA-06 17 3975931 3975931 G A ZZEF1 Missense_Mutation p.P1269S 0.94 tolerated(0.48) benign(0.002) TCGA-D9-A6EA-06 17 42854278 42854278 C G ADAM11 Nonsense_Mutation p.Y543* 0.79 TCGA-D9-A6EA-06 17 42883111 42883111 G A GJC1 Silent p.L25L 0.81 TCGA-D9-A6EA-06 17 45452041 45452041 A G EFCAB13 Missense_Mutation p.K361E 0.81 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EA-06 17 48452820 48452820 G T EME1 Missense_Mutation p.S84I 0.89 deleterious(0) probably_damaging(0.946) TCGA-D9-A6EA-06 17 61571326 61571326 C T ACE Silent p.I1060I 0.83 TCGA-D9-A6EA-06 17 61914862 61914862 G A SMARCD2 Missense_Mutation p.P114S 0.82 tolerated(0.13) benign(0.038) TCGA-D9-A6EA-06 17 62132152 62132152 G A ERN1 Missense_Mutation p.S570F 1.00 deleterious(0.04) benign(0.007) TCGA-D9-A6EA-06 17 64210724 64210724 C T APOH Missense_Mutation p.G277R 0.74 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 17 71391530 71391530 G A SDK2 Missense_Mutation p.P1119L 0.85 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 17 73559842 73559842 C T LLGL2 Missense_Mutation p.P279L 0.85 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EA-06 17 74136212 74136212 C T FOXJ1 Missense_Mutation p.G89S 0.92 tolerated(0.19) possibly_damaging(0.88) TCGA-D9-A6EA-06 17 7576865 7576865 A T TP53 Nonsense_Mutation p.Y327* 0.92 TCGA-D9-A6EA-06 17 76440868 76440868 C T DNAH17 Silent p.E3768E 0.75 TCGA-D9-A6EA-06 17 76450739 76450739 C T DNAH17 Missense_Mutation p.D3393N 0.85 benign(0.329) TCGA-D9-A6EA-06 17 7758981 7758981 G A TMEM88 Silent p.R143R 1.00 TCGA-D9-A6EA-06 17 78320598 78320598 C T RNF213 Silent p.T2821T 0.77 TCGA-D9-A6EA-06 17 7983597 7983597 T A AC129492.6 Missense_Mutation p.L93H 0.91 probably_damaging(0.941) TCGA-D9-A6EA-06 17 8049421 8049421 G A PER1 Silent p.A691A 0.93 TCGA-D9-A6EA-06 18 10697801 10697801 A G PIEZO2 Missense_Mutation p.Y2145H 0.12 tolerated(0.48) possibly_damaging(0.497) TCGA-D9-A6EA-06 18 14852054 14852054 G A ANKRD30B Missense_Mutation p.D1252N 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A6EA-06 18 21330947 21330947 G A LAMA3 Silent p.R250R 0.12 TCGA-D9-A6EA-06 18 22057033 22057033 C T HRH4 Missense_Mutation p.S227L 0.72 tolerated(0.23) benign(0.006) TCGA-D9-A6EA-06 18 24441235 24441235 G A AQP4 Missense_Mutation p.H158Y 0.18 deleterious(0.03) possibly_damaging(0.664) TCGA-D9-A6EA-06 18 28909955 28909955 C T DSG1 Missense_Mutation p.S158L 0.15 deleterious(0.01) benign(0.101) TCGA-D9-A6EA-06 18 3079235 3079235 G A MYOM1 Silent p.V1530V 0.16 TCGA-D9-A6EA-06 18 31319518 31319518 C T ASXL3 Missense_Mutation p.S717L 0.69 probably_damaging(0.997) TCGA-D9-A6EA-06 18 43221265 43221265 C T SLC14A2 Silent p.F361F 0.71 TCGA-D9-A6EA-06 18 47406756 47406756 G A MYO5B Silent p.L1039L 0.09 TCGA-D9-A6EA-06 18 47480712 47480712 C T MYO5B Missense_Mutation p.A547T 0.62 deleterious(0) benign(0.039) TCGA-D9-A6EA-06 18 47918528 47918528 A T SKA1 Nonsense_Mutation p.K227* 0.16 TCGA-D9-A6EA-06 18 48500853 48500853 C T ELAC1 Missense_Mutation p.R27W 0.12 deleterious(0.04) possibly_damaging(0.71) TCGA-D9-A6EA-06 18 51818283 51818283 C T POLI Missense_Mutation p.H427Y 0.56 deleterious(0) probably_damaging(0.926) TCGA-D9-A6EA-06 18 52556515 52556515 C T RAB27B Silent p.T176T 0.10 TCGA-D9-A6EA-06 18 52556516 52556516 C T RAB27B Missense_Mutation p.L177F 0.10 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 18 52899811 52899811 C T TCF4 Silent p.T628T 0.08 TCGA-D9-A6EA-06 18 5433988 5433988 C A EPB41L3 Silent p.G246G 0.74 TCGA-D9-A6EA-06 18 55027332 55027332 C T ST8SIA3 Missense_Mutation p.P323S 0.67 probably_damaging(1) TCGA-D9-A6EA-06 18 55362762 55362762 T C ATP8B1 Missense_Mutation p.E234G 0.62 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 18 56203083 56203083 C T ALPK2 Missense_Mutation p.E1446K 0.70 tolerated(0.13) benign(0.026) TCGA-D9-A6EA-06 18 56348519 56348519 C T MALT1 Silent p.F109F 0.19 TCGA-D9-A6EA-06 18 56963995 56963995 C T CPLX4 Missense_Mutation p.E140K 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-D9-A6EA-06 18 580552 580552 C T CETN1 Silent p.I48I 0.67 TCGA-D9-A6EA-06 18 70417353 70417353 G A NETO1 Silent p.I495I 0.82 TCGA-D9-A6EA-06 18 77104307 77104307 C T ATP9B Nonsense_Mutation p.R809* 0.14 TCGA-D9-A6EA-06 19 10077009 10077009 G A COL5A3 Missense_Mutation p.P1588L 0.39 unknown(0) TCGA-D9-A6EA-06 19 10124145 10124145 G A RDH8 Missense_Mutation p.G11E 0.36 tolerated_low_confidence(0.17) benign(0.027) TCGA-D9-A6EA-06 19 10800082 10800082 C T ILF3 3'UTR 0.45 TCGA-D9-A6EA-06 19 11145668 11145668 C T SMARCA4 Missense_Mutation p.P1344S 0.40 probably_damaging(0.999) TCGA-D9-A6EA-06 19 14273446 14273446 C T LPHN1 Silent p.L394L 0.43 TCGA-D9-A6EA-06 19 14707812 14707812 G A CLEC17A Silent p.V190V 0.47 TCGA-D9-A6EA-06 19 15053144 15053144 C T OR7C2 Missense_Mutation p.P282S 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A6EA-06 19 17017784 17017784 G A CPAMD8 Silent p.L1382L 0.64 TCGA-D9-A6EA-06 19 17412109 17412109 C T ABHD8 Missense_Mutation p.G106E 0.37 tolerated_low_confidence(0.33) benign(0.235) TCGA-D9-A6EA-06 19 17919150 17919150 C T B3GNT3 Silent p.F178F 0.38 TCGA-D9-A6EA-06 19 19339381 19339381 G A NCAN Nonsense_Mutation p.W984* 0.37 TCGA-D9-A6EA-06 19 2129146 2129146 G A AP3D1 Missense_Mutation p.P250L 0.62 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EA-06 19 21606504 21606504 C T ZNF493 Missense_Mutation p.S348F 0.37 deleterious(0.02) unknown(0) TCGA-D9-A6EA-06 19 22272240 22272240 C T ZNF257 Missense_Mutation p.S563L 0.50 deleterious_low_confidence(0.01) benign(0.002) TCGA-D9-A6EA-06 19 35517097 35517097 C T GRAMD1A 3'UTR 0.33 TCGA-D9-A6EA-06 19 35517098 35517098 C T GRAMD1A 3'UTR 0.33 TCGA-D9-A6EA-06 19 36322248 36322248 C T NPHS1 Missense_Mutation p.E1113K 0.40 tolerated(0.53) benign(0.027) TCGA-D9-A6EA-06 19 36342372 36342372 C T NPHS1 Silent p.G87G 0.38 TCGA-D9-A6EA-06 19 37642819 37642819 G A ZNF585A Missense_Mutation p.P606L 0.32 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EA-06 19 3783999 3783999 G A MATK Missense_Mutation p.A133V 0.32 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 19 38189153 38189153 G A ZNF607 Missense_Mutation p.H627Y 0.48 tolerated(0.33) benign(0.001) TCGA-D9-A6EA-06 19 39998909 39998909 C T DLL3 3'UTR 0.58 TCGA-D9-A6EA-06 19 40424009 40424009 C T FCGBP Missense_Mutation p.V732I 0.42 benign(0.401) TCGA-D9-A6EA-06 19 40424010 40424010 C T FCGBP Silent p.S731S 0.42 TCGA-D9-A6EA-06 19 40433356 40433356 G A FCGBP Missense_Mutation p.L305F 0.50 probably_damaging(0.963) TCGA-D9-A6EA-06 19 41510297 41510297 G A CYP2B6 Missense_Mutation p.E144K 0.27 deleterious(0.03) benign(0.253) TCGA-D9-A6EA-06 19 4310507 4310507 A G FSD1 Missense_Mutation p.K135R 0.35 tolerated(0.25) benign(0.358) TCGA-D9-A6EA-06 19 43383819 43383819 C T PSG1 5'UTR 0.55 TCGA-D9-A6EA-06 19 43709733 43709733 G A PSG4 5'UTR 0.46 TCGA-D9-A6EA-06 19 44792954 44792954 G A ZNF235 Missense_Mutation p.P212S 0.53 tolerated(0.53) possibly_damaging(0.649) TCGA-D9-A6EA-06 19 4511240 4511240 C T PLIN4 Missense_Mutation p.G897E 0.37 tolerated(0.1) possibly_damaging(0.467) TCGA-D9-A6EA-06 19 4523769 4523769 G A PLIN5 Missense_Mutation p.P388L 0.38 deleterious(0) possibly_damaging(0.581) TCGA-D9-A6EA-06 19 4538668 4538668 C T LRG1 Missense_Mutation p.E110K 0.49 tolerated(0.9) benign(0.001) TCGA-D9-A6EA-06 19 46289185 46289185 G A DMWD Silent p.F523F 0.43 TCGA-D9-A6EA-06 19 50906827 50906827 C T POLD1 Silent p.Y405Y 0.46 TCGA-D9-A6EA-06 19 50906828 50906828 C T POLD1 Missense_Mutation p.L406F 0.45 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EA-06 19 51274658 51274658 C T GPR32 Silent p.I267I 0.42 TCGA-D9-A6EA-06 19 51499413 51499413 C T KLK8 Missense_Mutation p.G274S 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 19 54080990 54080990 C T ZNF331 Silent p.F392F 0.38 TCGA-D9-A6EA-06 19 54385799 54385799 C T PRKCG Silent p.P17P 0.50 TCGA-D9-A6EA-06 19 54782677 54782677 G A LILRB2 Silent p.I315I 0.34 TCGA-D9-A6EA-06 19 54866919 54866919 G A LAIR1 Silent p.P274P 0.50 TCGA-D9-A6EA-06 19 55145132 55145132 C T LILRB1 Silent p.S435S 0.38 TCGA-D9-A6EA-06 19 55333187 55333187 A C KIR3DL1 Missense_Mutation p.T275P 0.47 deleterious(0.01) benign(0.063) TCGA-D9-A6EA-06 19 55446002 55446002 C T NLRP7 Missense_Mutation p.E776K 0.48 tolerated(0.15) benign(0.003) TCGA-D9-A6EA-06 19 56369489 56369489 G A NLRP4 Missense_Mutation p.D244N 0.44 deleterious(0.01) benign(0.157) TCGA-D9-A6EA-06 19 58563962 58563962 G A ZSCAN1 Silent p.A190A 0.55 TCGA-D9-A6EA-06 19 8468310 8468310 C T RAB11B Silent p.I175I 0.40 TCGA-D9-A6EA-06 19 8922501 8922501 G A ZNF558 Missense_Mutation p.S222F 0.49 tolerated(0.11) probably_damaging(0.999) TCGA-D9-A6EA-06 19 9064549 9064549 C T MUC16 Missense_Mutation p.E7633K 0.46 unknown(0) TCGA-D9-A6EA-06 19 9067219 9067219 G A MUC16 Missense_Mutation p.L6743F 0.45 unknown(0) TCGA-D9-A6EA-06 19 9085237 9085237 G A MUC16 Missense_Mutation p.S2193F 0.55 unknown(0) TCGA-D9-A6EA-06 19 9088300 9088300 G A MUC16 Missense_Mutation p.S1172L 0.46 unknown(0) TCGA-D9-A6EA-06 19 9089999 9089999 G A MUC16 Missense_Mutation p.P606S 0.47 unknown(0) TCGA-D9-A6EA-06 19 9204576 9204576 C T OR1M1 Missense_Mutation p.A219V 0.39 tolerated(0.69) benign(0.036) TCGA-D9-A6EA-06 19 9362470 9362470 G A OR7E24 Missense_Mutation p.G251R 0.25 deleterious(0.02) possibly_damaging(0.651) TCGA-D9-A6EA-06 19 9577721 9577721 C T ZNF560 Silent p.G634G 0.51 TCGA-D9-A6EA-06 1 103385889 103385889 G A COL11A1 Missense_Mutation p.S1247L 0.96 unknown(0) TCGA-D9-A6EA-06 1 104297380 104297380 G A AMY1C Missense_Mutation p.G349R 0.15 deleterious(0.01) possibly_damaging(0.797) TCGA-D9-A6EA-06 1 110217383 110217383 C T GSTM2 Silent p.I194I 0.96 TCGA-D9-A6EA-06 1 112031527 112031527 G A ADORA3 Missense_Mutation p.R193C 0.97 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D9-A6EA-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.90 tolerated(0.06) benign(0.006) TCGA-D9-A6EA-06 1 117556281 117556281 C T CD101 Silent p.F365F 0.95 TCGA-D9-A6EA-06 1 118657941 118657941 C T SPAG17 Missense_Mutation p.E147K 0.91 tolerated(0.06) possibly_damaging(0.827) TCGA-D9-A6EA-06 1 12907966 12907966 C T HNRNPCL1 Silent p.K59K 0.33 TCGA-D9-A6EA-06 1 151239724 151239724 C T PSMD4 Missense_Mutation p.P347S 0.97 deleterious(0.01) possibly_damaging(0.725) TCGA-D9-A6EA-06 1 151740640 151740640 G A OAZ3 Missense_Mutation p.G92D 0.98 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EA-06 1 152080059 152080059 C T TCHH Silent p.R1878R 0.94 TCGA-D9-A6EA-06 1 152127415 152127415 C T RPTN Silent p.E720E 0.94 TCGA-D9-A6EA-06 1 152187880 152187880 T G HRNR Silent p.S2075S 0.81 TCGA-D9-A6EA-06 1 152276950 152276950 C A FLG Missense_Mutation p.G3471V 0.94 unknown(0) TCGA-D9-A6EA-06 1 152281999 152281999 C T FLG Missense_Mutation p.G1788E 0.94 probably_damaging(0.931) TCGA-D9-A6EA-06 1 152282066 152282066 G A FLG Missense_Mutation p.L1766F 0.93 possibly_damaging(0.587) TCGA-D9-A6EA-06 1 154960749 154960749 C T FLAD1 Missense_Mutation p.P181S 0.92 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EA-06 1 156815192 156815192 C T INSRR Missense_Mutation p.V730M 0.95 tolerated(0.23) benign(0.019) TCGA-D9-A6EA-06 1 158617379 158617379 C T SPTA1 Silent p.K1282K 0.95 TCGA-D9-A6EA-06 1 165398092 165398092 C T RXRG Missense_Mutation p.R54Q 0.92 tolerated_low_confidence(0.61) probably_damaging(0.968) TCGA-D9-A6EA-06 1 168282086 168282086 A G TBX19 Missense_Mutation p.Q398R 0.89 tolerated_low_confidence(0.49) benign(0.427) TCGA-D9-A6EA-06 1 171510670 171510670 G A PRRC2C Silent p.R1353R 0.94 TCGA-D9-A6EA-06 1 178427504 178427504 C T RASAL2 Missense_Mutation p.P1026L 0.98 tolerated(0.06) benign(0.034) TCGA-D9-A6EA-06 1 182783974 182783974 C A NPL Missense_Mutation p.F115L 0.92 deleterious(0.05) possibly_damaging(0.46) TCGA-D9-A6EA-06 1 186134267 186134267 C T HMCN1 Missense_Mutation p.S5094F 0.93 benign(0.049) TCGA-D9-A6EA-06 1 19062415 19062415 C T PAX7 Missense_Mutation p.S482F 0.91 deleterious_low_confidence(0) benign(0) TCGA-D9-A6EA-06 1 200877985 200877985 C T C1orf106 Silent p.V234V 0.93 TCGA-D9-A6EA-06 1 201356158 201356158 C T LAD1 Missense_Mutation p.E111K 0.94 deleterious(0.01) possibly_damaging(0.713) TCGA-D9-A6EA-06 1 203821582 203821582 T C ZC3H11A 3'UTR 0.97 TCGA-D9-A6EA-06 1 20442949 20442949 C T PLA2G2D Missense_Mutation p.G21E 0.94 deleterious(0.02) possibly_damaging(0.876) TCGA-D9-A6EA-06 1 209791952 209791952 G T LAMB3 Silent p.A918A 0.89 TCGA-D9-A6EA-06 1 215768791 215768791 A C KCTD3 Missense_Mutation p.N304T 0.91 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EA-06 1 215793886 215793886 C T KCTD3 Missense_Mutation p.P792S 0.96 tolerated_low_confidence(0.11) possibly_damaging(0.56) TCGA-D9-A6EA-06 1 216496835 216496835 C T USH2A Missense_Mutation p.E511K 0.92 probably_damaging(0.997) TCGA-D9-A6EA-06 1 22170655 22170655 G A HSPG2 Missense_Mutation p.P2868S 0.89 probably_damaging(1) TCGA-D9-A6EA-06 1 226420147 226420147 G A LIN9 3'UTR 0.85 TCGA-D9-A6EA-06 1 228003822 228003822 C T PRSS38 Silent p.I60I 0.92 TCGA-D9-A6EA-06 1 23189627 23189627 T C EPHB2 Silent p.C303C 0.08 TCGA-D9-A6EA-06 1 233802505 233802505 T C KCNK1 Missense_Mutation p.F174L 0.89 tolerated(0.86) benign(0.001) TCGA-D9-A6EA-06 1 236979789 236979789 C T MTR Missense_Mutation p.S237F 0.96 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 1 240371341 240371341 C T FMN2 Missense_Mutation p.P1077S 0.71 unknown(0) TCGA-D9-A6EA-06 1 3342247 3342247 C T PRDM16 Silent p.N1014N 0.87 TCGA-D9-A6EA-06 1 3342248 3342248 C T PRDM16 Missense_Mutation p.R1015C 0.87 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EA-06 1 34666392 34666392 G A C1orf94 Silent p.K343K 0.93 TCGA-D9-A6EA-06 1 38227621 38227621 G A EPHA10 Silent p.F102F 0.93 TCGA-D9-A6EA-06 1 50610797 50610797 G A ELAVL4 Missense_Mutation p.E77K 0.96 tolerated(0.1) benign(0.104) TCGA-D9-A6EA-06 1 53544534 53544534 G A PODN Missense_Mutation p.R499Q 0.95 tolerated(0.09) possibly_damaging(0.477) TCGA-D9-A6EA-06 1 63099229 63099229 T C DOCK7 Silent p.Q352Q 0.95 TCGA-D9-A6EA-06 1 74575193 74575193 C T LRRIQ3 Missense_Mutation p.R251K 0.89 tolerated(0.32) benign(0.01) TCGA-D9-A6EA-06 1 78189114 78189114 G A USP33 Missense_Mutation p.P462S 0.85 tolerated(0.93) benign(0.013) TCGA-D9-A6EA-06 1 79470894 79470894 G A ELTD1 Silent p.S11S 0.88 TCGA-D9-A6EA-06 1 89851007 89851007 A G GBP6 Silent p.K627K 0.90 TCGA-D9-A6EA-06 1 9086405 9086405 C T SLC2A7 5'Flank 0.88 TCGA-D9-A6EA-06 1 94996126 94996126 C T F3 Missense_Mutation p.V260I 0.95 tolerated(0.16) benign(0.035) TCGA-D9-A6EA-06 20 1532560 1532560 C T SIRPD Silent p.K66K 0.40 TCGA-D9-A6EA-06 20 20079296 20079296 C T C20orf26 Intron 0.24 TCGA-D9-A6EA-06 20 25002056 25002056 A T ACSS1 Silent p.L359L 0.33 TCGA-D9-A6EA-06 20 2591227 2591227 G A TMC2 Missense_Mutation p.D526N 0.26 deleterious(0.03) probably_damaging(0.985) TCGA-D9-A6EA-06 20 2776303 2776303 C T CPXM1 Silent p.Q554Q 0.49 TCGA-D9-A6EA-06 20 30584972 30584972 G A XKR7 Silent p.R484R 0.38 TCGA-D9-A6EA-06 20 30671804 30671804 A C HCK Missense_Mutation p.S214R 0.44 tolerated(0.22) benign(0.213) TCGA-D9-A6EA-06 20 31023733 31023733 G T ASXL1 Missense_Mutation p.R1073L 0.52 deleterious(0.02) benign(0.02) TCGA-D9-A6EA-06 20 31577426 31577426 C A SUN5 Missense_Mutation p.G205W 0.45 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 20 31607532 31607532 C T BPIFB2 Silent p.F352F 0.37 TCGA-D9-A6EA-06 20 31890183 31890183 C T BPIFB1 Missense_Mutation p.R316W 0.47 tolerated(0.06) benign(0.025) TCGA-D9-A6EA-06 20 35173263 35173263 G A MYL9 Intron 0.56 TCGA-D9-A6EA-06 20 35317155 35317155 G A NDRG3 Silent p.V42V 0.41 TCGA-D9-A6EA-06 20 3649422 3649422 G A ADAM33 3'UTR 0.62 TCGA-D9-A6EA-06 20 39750787 39750787 A G TOP1 Silent p.T729T 0.51 TCGA-D9-A6EA-06 20 40709527 40709527 A T PTPRT Missense_Mutation p.S1440T 0.36 tolerated(0.14) benign(0.24) TCGA-D9-A6EA-06 20 42885826 42885826 T G GDAP1L1 Missense_Mutation p.C72G 0.31 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EA-06 20 45354699 45354699 C T SLC2A10 Missense_Mutation p.P342S 0.41 tolerated(0.33) benign(0.004) TCGA-D9-A6EA-06 20 50230308 50230308 A G ATP9A Silent p.L827L 0.45 TCGA-D9-A6EA-06 20 50346415 50346415 G A ATP9A Silent p.V57V 0.48 TCGA-D9-A6EA-06 20 52570034 52570034 C T BCAS1 Silent p.G539G 0.49 TCGA-D9-A6EA-06 20 60913306 60913306 G A LAMA5 Missense_Mutation p.H580Y 0.41 benign(0.27) TCGA-D9-A6EA-06 20 60986024 60986024 C T RBBP8NL Silent p.R635R 0.37 TCGA-D9-A6EA-06 20 61143344 61143344 C T C20orf166 5'Flank 0.42 TCGA-D9-A6EA-06 20 61939901 61939901 C T COL20A1 Silent p.A261A 0.56 TCGA-D9-A6EA-06 20 61944505 61944505 C T COL20A1 Missense_Mutation p.P705S 0.47 tolerated(0.15) benign(0.084) TCGA-D9-A6EA-06 20 61944506 61944506 C T COL20A1 Missense_Mutation p.P705L 0.44 tolerated(0.06) possibly_damaging(0.597) TCGA-D9-A6EA-06 20 62729656 62729656 C T OPRL1 Missense_Mutation p.T206I 0.40 tolerated(0.07) benign(0.015) TCGA-D9-A6EA-06 20 62839838 62839838 A G MYT1 Missense_Mutation p.K430R 0.33 possibly_damaging(0.468) TCGA-D9-A6EA-06 20 9364934 9364934 G A PLCB4 Missense_Mutation p.E314K 0.18 deleterious(0) possibly_damaging(0.574) TCGA-D9-A6EA-06 20 9404510 9404510 C T PLCB4 Missense_Mutation p.S800F 0.35 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 21 11039138 11039138 G A BAGE2 RNA 0.05 TCGA-D9-A6EA-06 21 31802960 31802960 C T KRTAP13-4 Missense_Mutation p.P123S 0.47 tolerated(0.29) probably_damaging(0.913) TCGA-D9-A6EA-06 21 35186362 35186362 C T ITSN1 Missense_Mutation p.P905S 0.43 tolerated(0.09) possibly_damaging(0.54) TCGA-D9-A6EA-06 21 39086562 39086562 C T KCNJ6 Missense_Mutation p.E300K 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-D9-A6EA-06 21 45107444 45107444 C T RRP1B Nonsense_Mutation p.Q397* 0.38 TCGA-D9-A6EA-06 21 45877282 45877282 C T LRRC3 Missense_Mutation p.P252L 0.40 tolerated(0.19) benign(0.004) TCGA-D9-A6EA-06 21 45959685 45959685 C T KRTAP10-1 Missense_Mutation p.D117N 0.41 tolerated(0.38) unknown(0) TCGA-D9-A6EA-06 21 45999626 45999626 C T KRTAP10-5 3'UTR 0.40 TCGA-D9-A6EA-06 21 47320969 47320969 C A PCBP3 Missense_Mutation p.T94K 0.43 deleterious(0) possibly_damaging(0.507) TCGA-D9-A6EA-06 22 16279277 16279277 C T POTEH Missense_Mutation p.G316S 0.17 deleterious(0.02) probably_damaging(0.955) TCGA-D9-A6EA-06 22 22036790 22036790 C T PPIL2 Missense_Mutation p.S151F 0.52 deleterious(0) possibly_damaging(0.601) TCGA-D9-A6EA-06 22 22318312 22318312 G C TOP3B Missense_Mutation p.A396G 0.05 tolerated(0.05) benign(0.168) TCGA-D9-A6EA-06 22 22890774 22890774 C T PRAME Silent p.G415G 0.25 TCGA-D9-A6EA-06 22 24906726 24906726 T A UPB1 Missense_Mutation p.F125Y 0.31 tolerated(0.45) possibly_damaging(0.888) TCGA-D9-A6EA-06 22 24921762 24921762 G A UPB1 Silent p.%3D 0.53 TCGA-D9-A6EA-06 22 25308672 25308672 G A SGSM1 Missense_Mutation p.G1016R 0.54 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EA-06 22 27003982 27003982 C T CRYBB1 Nonsense_Mutation p.W101* 0.45 TCGA-D9-A6EA-06 22 30127022 30127022 G A ZMAT5 3'UTR 0.43 TCGA-D9-A6EA-06 22 30762175 30762175 T G CCDC157 Silent p.V62V 0.22 TCGA-D9-A6EA-06 22 30762176 30762176 C A CCDC157 Missense_Mutation p.P63T 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EA-06 22 38822657 38822657 C T KCNJ4 3'UTR 0.21 TCGA-D9-A6EA-06 22 39811063 39811063 T C TAB1 Missense_Mutation p.V29A 0.39 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 22 39917506 39917506 C T ATF4 Missense_Mutation p.P19L 0.58 tolerated(0.07) probably_damaging(0.999) TCGA-D9-A6EA-06 22 42483172 42483172 T C NDUFA6 Silent p.Q75Q 0.33 TCGA-D9-A6EA-06 22 42606416 42606416 G A TCF20 Silent p.Y1632Y 0.51 TCGA-D9-A6EA-06 22 43606952 43606952 A T SCUBE1 Missense_Mutation p.S787T 0.50 tolerated(0.07) possibly_damaging(0.734) TCGA-D9-A6EA-06 22 43617285 43617285 G A SCUBE1 Silent p.T481T 0.34 TCGA-D9-A6EA-06 22 45795178 45795178 T A SMC1B Missense_Mutation p.N304Y 0.57 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A6EA-06 22 45795179 45795179 T A SMC1B Missense_Mutation p.E303D 0.57 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A6EA-06 22 46795743 46795743 G A CELSR1 Silent p.S1761S 0.43 TCGA-D9-A6EA-06 2 10140856 10140856 C T GRHL1 3'UTR 0.49 TCGA-D9-A6EA-06 2 105473139 105473139 A T POU3F3 Missense_Mutation p.T391S 0.38 tolerated(0.52) benign(0.056) TCGA-D9-A6EA-06 2 105473140 105473140 C T POU3F3 Missense_Mutation p.T391I 0.38 deleterious(0.01) possibly_damaging(0.617) TCGA-D9-A6EA-06 2 105473141 105473141 C T POU3F3 Silent p.T391T 0.36 TCGA-D9-A6EA-06 2 109099571 109099571 G A GCC2 Silent p.K1133K 0.21 TCGA-D9-A6EA-06 2 109383769 109383769 C T RANBP2 Silent p.F2258F 0.31 TCGA-D9-A6EA-06 2 109964176 109964176 G A SH3RF3 Missense_Mutation p.G207E 0.35 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 2 111789239 111789239 G A ACOXL Nonsense_Mutation p.W439* 0.46 TCGA-D9-A6EA-06 2 112944963 112944963 G A FBLN7 Silent p.Q400Q 0.46 TCGA-D9-A6EA-06 2 113890349 113890349 C T IL1RN Silent p.F148F 0.33 TCGA-D9-A6EA-06 2 11702663 11702663 C T GREB1 Missense_Mutation p.P78S 0.39 tolerated(0.11) benign(0.009) TCGA-D9-A6EA-06 2 119739223 119739223 G A MARCO Missense_Mutation p.G298R 0.20 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EA-06 2 125530384 125530384 G A CNTNAP5 Missense_Mutation p.E847K 0.34 tolerated(0.12) benign(0.232) TCGA-D9-A6EA-06 2 127806056 127806056 G A BIN1 3'UTR 0.32 TCGA-D9-A6EA-06 2 141283880 141283880 C T LRP1B Missense_Mutation p.G2601E 0.43 probably_damaging(0.982) TCGA-D9-A6EA-06 2 141299408 141299408 G A LRP1B Missense_Mutation p.R2443C 0.51 possibly_damaging(0.689) TCGA-D9-A6EA-06 2 141773434 141773434 C T LRP1B Missense_Mutation p.G674E 0.60 probably_damaging(0.982) TCGA-D9-A6EA-06 2 149247684 149247684 G A MBD5 Missense_Mutation p.E1262K 0.38 deleterious_low_confidence(0.03) unknown(0) TCGA-D9-A6EA-06 2 15607794 15607794 A T NBAS Missense_Mutation p.F671Y 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-D9-A6EA-06 2 158272554 158272554 G A CYTIP Nonsense_Mutation p.R239* 0.34 TCGA-D9-A6EA-06 2 167288995 167288995 C T SCN7A Missense_Mutation p.E809K 0.46 tolerated(0.38) possibly_damaging(0.582) TCGA-D9-A6EA-06 2 170042066 170042066 G A LRP2 Silent p.I3264I 0.56 TCGA-D9-A6EA-06 2 179413949 179413949 C T TTN Missense_Mutation p.G30802R 0.47 TCGA-D9-A6EA-06 2 179426452 179426452 C T TTN Missense_Mutation p.G28136E 0.48 TCGA-D9-A6EA-06 2 179466747 179466747 C T TTN Silent p.K18417K 0.39 TCGA-D9-A6EA-06 2 179499171 179499171 C T TTN Missense_Mutation p.D14113N 0.51 TCGA-D9-A6EA-06 2 179522816 179522816 G A TTN Missense_Mutation p.P12594S 0.10 TCGA-D9-A6EA-06 2 179554074 179554074 G A TTN Missense_Mutation p.P10652S 0.45 TCGA-D9-A6EA-06 2 179554089 179554089 G C TTN Missense_Mutation p.P10647A 0.26 TCGA-D9-A6EA-06 2 179604026 179604026 G A TTN Missense_Mutation p.P4645L 0.27 TCGA-D9-A6EA-06 2 179605572 179605572 C T TTN Missense_Mutation p.E4130K 0.45 TCGA-D9-A6EA-06 2 179736897 179736897 T A CCDC141 Missense_Mutation p.K681I 0.48 deleterious(0) probably_damaging(0.94) TCGA-D9-A6EA-06 2 179977461 179977461 A T SESTD1 Missense_Mutation p.Y651N 0.48 tolerated(0.14) possibly_damaging(0.467) TCGA-D9-A6EA-06 2 187693102 187693102 G A ZSWIM2 Missense_Mutation p.S504L 0.30 tolerated(0.09) benign(0.202) TCGA-D9-A6EA-06 2 197640835 197640835 C T GTF3C3 Missense_Mutation p.E532K 0.35 deleterious(0.01) possibly_damaging(0.576) TCGA-D9-A6EA-06 2 197755585 197755585 G A PGAP1 Silent p.I380I 0.41 TCGA-D9-A6EA-06 2 206480365 206480365 C T PARD3B Missense_Mutation p.P1087L 0.47 deleterious(0.01) possibly_damaging(0.678) TCGA-D9-A6EA-06 2 207509337 207509337 C T AC010731.4 RNA 0.50 TCGA-D9-A6EA-06 2 210570368 210570368 C T MAP2 Missense_Mutation p.P1550L 0.39 deleterious_low_confidence(0) benign(0.284) TCGA-D9-A6EA-06 2 212251872 212251872 G A ERBB4 Nonsense_Mutation p.Q1063* 0.24 TCGA-D9-A6EA-06 2 219294122 219294122 C T VIL1 Missense_Mutation p.H228Y 0.31 tolerated(0.06) benign(0) TCGA-D9-A6EA-06 2 220366257 220366257 C T GMPPA Silent p.T66T 0.29 TCGA-D9-A6EA-06 2 220379880 220379880 A T ASIC4 Missense_Mutation p.K272I 0.36 tolerated(0.07) possibly_damaging(0.852) TCGA-D9-A6EA-06 2 220423149 220423149 G A OBSL1 Missense_Mutation p.R1087C 0.46 deleterious(0.01) possibly_damaging(0.841) TCGA-D9-A6EA-06 2 222291272 222291272 G A EPHA4 Missense_Mutation p.L920F 0.53 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EA-06 2 226446835 226446835 C T NYAP2 Silent p.P234P 0.42 TCGA-D9-A6EA-06 2 227924951 227924951 C T COL4A4 Missense_Mutation p.G689R 0.33 probably_damaging(0.995) TCGA-D9-A6EA-06 2 228147117 228147117 G A COL4A3 Missense_Mutation p.G842E 0.45 unknown(0) TCGA-D9-A6EA-06 2 228883717 228883717 C T SPHKAP Missense_Mutation p.G618E 0.56 deleterious(0.01) benign(0.039) TCGA-D9-A6EA-06 2 228884123 228884123 G A SPHKAP Missense_Mutation p.L483F 0.38 tolerated(0.74) benign(0.008) TCGA-D9-A6EA-06 2 228886515 228886515 C T SPHKAP Silent p.T203T 0.28 TCGA-D9-A6EA-06 2 230652368 230652368 G A TRIP12 Silent p.F1541F 0.64 TCGA-D9-A6EA-06 2 231155212 231155212 G A SP140 Silent p.K586K 0.45 TCGA-D9-A6EA-06 2 231774939 231774939 A G GPR55 Missense_Mutation p.F247L 0.21 tolerated(0.32) benign(0.075) TCGA-D9-A6EA-06 2 232209755 232209755 C T ARMC9 Silent p.P649P 0.52 TCGA-D9-A6EA-06 2 234249108 234249108 G A SAG Missense_Mutation p.G344R 0.36 deleterious(0.01) possibly_damaging(0.847) TCGA-D9-A6EA-06 2 234652393 234652393 G A UGT1A10 Intron 0.36 TCGA-D9-A6EA-06 2 25062747 25062747 G A ADCY3 Silent p.I450I 0.50 TCGA-D9-A6EA-06 2 28826894 28826894 G A PLB1 Missense_Mutation p.A946T 0.40 tolerated(0.45) benign(0.043) TCGA-D9-A6EA-06 2 28849369 28849369 G A PLB1 Silent p.E1218E 0.39 TCGA-D9-A6EA-06 2 29551258 29551258 G A ALK Missense_Mutation p.H458Y 0.36 tolerated(0.06) benign(0.34) TCGA-D9-A6EA-06 2 31168701 31168701 G A GALNT14 Silent p.I235I 0.34 TCGA-D9-A6EA-06 2 33740224 33740224 G A RASGRP3 Silent p.G7G 0.42 TCGA-D9-A6EA-06 2 44507907 44507907 G A SLC3A1 Nonsense_Mutation p.W161* 0.49 TCGA-D9-A6EA-06 2 48915041 48915041 C T LHCGR Missense_Mutation p.R632K 0.37 tolerated(0.34) benign(0.145) TCGA-D9-A6EA-06 2 60687925 60687925 C T BCL11A Missense_Mutation p.G708R 0.54 deleterious(0.03) possibly_damaging(0.84) TCGA-D9-A6EA-06 2 61719213 61719213 A G XPO1 Missense_Mutation p.L615S 0.51 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 2 65298833 65298833 C T CEP68 Silent p.S201S 0.42 TCGA-D9-A6EA-06 2 69040489 69040489 C T ARHGAP25 Missense_Mutation p.P249S 0.38 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EA-06 2 7160794 7160794 C T RNF144A Silent p.F164F 0.42 TCGA-D9-A6EA-06 2 73716847 73716847 C T ALMS1 Silent p.F2586F 0.40 TCGA-D9-A6EA-06 2 85049027 85049027 G A TRABD2A 3'UTR 0.85 TCGA-D9-A6EA-06 2 85892791 85892791 C T SFTPB Missense_Mutation p.D186N 0.40 tolerated(0.17) benign(0.013) TCGA-D9-A6EA-06 2 8871128 8871128 G A KIDINS220 Missense_Mutation p.P1680S 0.52 tolerated_low_confidence(0.09) benign(0.024) TCGA-D9-A6EA-06 2 88890400 88890400 G A EIF2AK3 Missense_Mutation p.S313L 0.32 tolerated(0.3) possibly_damaging(0.573) TCGA-D9-A6EA-06 2 95941847 95941847 T C PROM2 Missense_Mutation p.M155T 0.44 tolerated(0.07) possibly_damaging(0.624) TCGA-D9-A6EA-06 2 96781866 96781866 G A ADRA2B Missense_Mutation p.S8F 0.28 deleterious(0) probably_damaging(0.974) TCGA-D9-A6EA-06 2 98709700 98709700 A G VWA3B Missense_Mutation p.K49E 0.32 deleterious(0) possibly_damaging(0.598) TCGA-D9-A6EA-06 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.15 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 3 111638045 111638045 G A PHLDB2 Missense_Mutation p.D616N 0.57 deleterious(0) benign(0.061) TCGA-D9-A6EA-06 3 11606393 11606393 G A VGLL4 Missense_Mutation p.H125Y 0.16 deleterious(0.04) possibly_damaging(0.868) TCGA-D9-A6EA-06 3 121353237 121353237 C T HCLS1 Silent p.A240A 0.74 TCGA-D9-A6EA-06 3 121980432 121980432 C T CASR Missense_Mutation p.L184F 0.21 tolerated(1) possibly_damaging(0.562) TCGA-D9-A6EA-06 3 121980435 121980435 C T CASR Nonsense_Mutation p.R185* 0.21 TCGA-D9-A6EA-06 3 122351025 122351025 G A PARP15 Missense_Mutation p.D511N 0.65 tolerated(0.46) benign(0.003) TCGA-D9-A6EA-06 3 123014940 123014940 C T ADCY5 Nonsense_Mutation p.W1018* 0.67 TCGA-D9-A6EA-06 3 123451834 123451834 C T MYLK Silent p.L475L 0.13 TCGA-D9-A6EA-06 3 124632017 124632017 C T MUC13 Silent p.G384G 0.60 TCGA-D9-A6EA-06 3 126142424 126142424 G A CCDC37 Missense_Mutation p.S408N 0.16 deleterious(0.02) benign(0.083) TCGA-D9-A6EA-06 3 128181598 128181598 A G DNAJB8 Missense_Mutation p.F164S 0.12 tolerated(0.32) possibly_damaging(0.603) TCGA-D9-A6EA-06 3 129281942 129281942 G A PLXND1 Missense_Mutation p.P1555S 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-D9-A6EA-06 3 130380672 130380672 G A COL6A6 Missense_Mutation p.D2008N 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EA-06 3 133372319 133372319 T A TOPBP1 Silent p.T264T 0.63 TCGA-D9-A6EA-06 3 138178089 138178089 G A ESYT3 Silent p.G214G 0.71 TCGA-D9-A6EA-06 3 142253969 142253969 G A ATR Missense_Mutation p.R1300C 0.65 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 3 148601541 148601541 C T CPA3 Missense_Mutation p.S307F 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 3 149095217 149095217 C T TM4SF1 Missense_Mutation p.E40K 0.25 tolerated(0.19) possibly_damaging(0.501) TCGA-D9-A6EA-06 3 151599307 151599307 G A SUCNR1 Missense_Mutation p.E326K 0.25 tolerated_low_confidence(0.32) benign(0.018) TCGA-D9-A6EA-06 3 155198941 155198941 G A PLCH1 Missense_Mutation p.S1633F 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EA-06 3 155200163 155200163 G A PLCH1 Missense_Mutation p.H1226Y 0.17 tolerated_low_confidence(0.41) benign(0.141) TCGA-D9-A6EA-06 3 157178021 157178021 C T VEPH1 Missense_Mutation p.A160T 0.60 deleterious(0.01) possibly_damaging(0.77) TCGA-D9-A6EA-06 3 157178022 157178022 C T VEPH1 Silent p.K159K 0.60 TCGA-D9-A6EA-06 3 158387396 158387396 C T LXN Missense_Mutation p.V66I 0.70 tolerated(0.2) benign(0.002) TCGA-D9-A6EA-06 3 158387398 158387398 T C LXN Missense_Mutation p.Q65R 0.70 tolerated(0.46) benign(0.005) TCGA-D9-A6EA-06 3 158787125 158787125 C T IQCJ 5'UTR 0.27 TCGA-D9-A6EA-06 3 184100658 184100658 C T CHRD Missense_Mutation p.P333S 0.24 tolerated(0.07) benign(0.209) TCGA-D9-A6EA-06 3 186390650 186390650 C T HRG Silent p.H211H 0.10 TCGA-D9-A6EA-06 3 193210749 193210749 G A ATP13A4 Nonsense_Mutation p.Q164* 0.22 TCGA-D9-A6EA-06 3 26751071 26751071 G A LRRC3B 5'UTR 0.71 TCGA-D9-A6EA-06 3 31710154 31710154 C T OSBPL10 Silent p.K692K 0.53 TCGA-D9-A6EA-06 3 32754731 32754731 C T CNOT10 Missense_Mutation p.A208V 0.18 deleterious(0.05) probably_damaging(0.988) TCGA-D9-A6EA-06 3 33135509 33135509 G T TMPPE Missense_Mutation p.S60Y 0.76 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EA-06 3 36873930 36873930 C T TRANK1 Missense_Mutation p.G2338R 0.18 tolerated(0.09) benign(0.093) TCGA-D9-A6EA-06 3 36874347 36874347 G A TRANK1 Missense_Mutation p.P2199S 0.24 tolerated(0.17) benign(0.057) TCGA-D9-A6EA-06 3 38591903 38591903 T A SCN5A Missense_Mutation p.N1987I 0.55 tolerated(0.11) probably_damaging(0.999) TCGA-D9-A6EA-06 3 38770043 38770043 C T SCN10A Missense_Mutation p.G877E 0.23 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EA-06 3 39229835 39229835 G A XIRP1 Missense_Mutation p.P368S 0.65 tolerated(0.12) benign(0.25) TCGA-D9-A6EA-06 3 39543680 39543680 G A MOBP Silent p.V40V 0.27 TCGA-D9-A6EA-06 3 40251444 40251444 G A MYRIP Missense_Mutation p.E589K 0.68 tolerated(0.05) benign(0.099) TCGA-D9-A6EA-06 3 42916445 42916445 C - CYP8B1 Frame_Shift_Del p.P289Lfs*11 0.30 TCGA-D9-A6EA-06 3 44684346 44684346 T A ZNF197 Missense_Mutation p.F575Y 0.73 deleterious(0.01) possibly_damaging(0.907) TCGA-D9-A6EA-06 3 44856526 44856526 C T KIF15 Missense_Mutation p.S836F 0.22 deleterious(0) benign(0.261) TCGA-D9-A6EA-06 3 48629399 48629399 G A COL7A1 Missense_Mutation p.S430F 0.17 unknown(0) TCGA-D9-A6EA-06 3 48691853 48691853 C T CELSR3 Missense_Mutation p.G1674E 0.37 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EA-06 3 48725644 48725644 G A IP6K2 3'UTR 0.70 TCGA-D9-A6EA-06 3 49850122 49850122 C T UBA7 Missense_Mutation p.E173K 0.59 deleterious(0.02) possibly_damaging(0.566) TCGA-D9-A6EA-06 3 52539134 52539134 C T STAB1 Missense_Mutation p.P498L 0.20 tolerated(0.37) benign(0.002) TCGA-D9-A6EA-06 3 52561857 52561857 G A NT5DC2 Missense_Mutation p.P308L 0.11 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 3 52677322 52677322 G A PBRM1 Missense_Mutation p.P313S 0.58 tolerated(0.46) benign(0) TCGA-D9-A6EA-06 3 54905644 54905644 G A CACNA2D3 Missense_Mutation p.D569N 0.18 deleterious(0.03) benign(0.411) TCGA-D9-A6EA-06 3 55984565 55984565 T G ERC2 Missense_Mutation p.K764T 0.57 deleterious(0.04) probably_damaging(0.996) TCGA-D9-A6EA-06 3 77614213 77614213 G A ROBO2 Silent p.A613A 0.62 TCGA-D9-A6EA-06 3 87018239 87018239 G A VGLL3 Silent p.F146F 0.19 TCGA-D9-A6EA-06 3 8787215 8787215 G A CAV3 Missense_Mutation p.D40N 0.19 tolerated(0.27) probably_damaging(0.911) TCGA-D9-A6EA-06 3 9069797 9069797 C T SRGAP3 Intron 0.18 TCGA-D9-A6EA-06 3 9719703 9719703 C T MTMR14 Silent p.F286F 0.68 TCGA-D9-A6EA-06 4 104511031 104511031 G A TACR3 Silent p.T402T 0.50 TCGA-D9-A6EA-06 4 110723201 110723201 T A CFI 5'UTR 0.50 TCGA-D9-A6EA-06 4 110765424 110765424 C T RRH 3'UTR 0.53 TCGA-D9-A6EA-06 4 113567583 113567583 A T LARP7 Silent p.A100A 0.57 TCGA-D9-A6EA-06 4 119674001 119674001 G A SEC24D Silent p.I488I 0.49 TCGA-D9-A6EA-06 4 121957440 121957440 C T NDNF Silent p.V562V 0.55 TCGA-D9-A6EA-06 4 121958589 121958589 G A NDNF Silent p.D179D 0.35 TCGA-D9-A6EA-06 4 126408728 126408728 C T FAT4 Missense_Mutation p.P4349S 0.52 benign(0.041) TCGA-D9-A6EA-06 4 128651823 128651823 C T SLC25A31 Silent p.I41I 0.46 TCGA-D9-A6EA-06 4 129782889 129782889 C T JADE1 Missense_Mutation p.H338Y 0.37 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 4 1388279 1388279 C T CRIPAK 5'UTR 0.55 TCGA-D9-A6EA-06 4 141600878 141600878 G A TBC1D9 Silent p.L160L 0.65 TCGA-D9-A6EA-06 4 151114356 151114356 C T DCLK2 Missense_Mutation p.R275C 0.54 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 4 153897235 153897235 C T FHDC1 Missense_Mutation p.P931L 0.37 tolerated(0.17) benign(0.05) TCGA-D9-A6EA-06 4 154624727 154624727 C T TLR2 Missense_Mutation p.S223F 0.17 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EA-06 4 155156047 155156047 C T DCHS2 Missense_Mutation p.D2798N 0.51 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 4 155254394 155254394 G A DCHS2 Missense_Mutation p.S490F 0.68 tolerated(0.12) benign(0.16) TCGA-D9-A6EA-06 4 155295099 155295099 C T DCHS2 Silent p.Q145Q 0.51 TCGA-D9-A6EA-06 4 155748977 155748977 C T RBM46 Intron 0.49 TCGA-D9-A6EA-06 4 158074127 158074127 G A GLRB Missense_Mutation p.G388R 0.36 tolerated(0.15) probably_damaging(0.939) TCGA-D9-A6EA-06 4 158257627 158257627 G A GRIA2 Missense_Mutation p.M524I 0.67 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EA-06 4 162459388 162459388 G A FSTL5 Silent p.I414I 0.56 TCGA-D9-A6EA-06 4 166960489 166960489 A G TLL1 Splice_Site p.X387_splice 0.48 TCGA-D9-A6EA-06 4 175896841 175896841 C T ADAM29 Silent p.I55I 0.44 TCGA-D9-A6EA-06 4 177142381 177142381 G A ASB5 Missense_Mutation p.P199S 0.49 tolerated(0.35) probably_damaging(0.993) TCGA-D9-A6EA-06 4 183675628 183675628 G A TENM3 Missense_Mutation p.E1370K 0.48 tolerated(0.06) benign(0.005) TCGA-D9-A6EA-06 4 183710456 183710456 G A TENM3 Missense_Mutation p.E1839K 0.57 deleterious(0.01) possibly_damaging(0.651) TCGA-D9-A6EA-06 4 183714431 183714431 G A TENM3 Silent p.T2202T 0.52 TCGA-D9-A6EA-06 4 189061682 189061682 G A TRIML1 Missense_Mutation p.E137K 0.32 tolerated(0.13) benign(0.014) TCGA-D9-A6EA-06 4 26430439 26430439 G A RBPJ Missense_Mutation p.R295K 0.11 tolerated(0.17) benign(0.017) TCGA-D9-A6EA-06 4 38798172 38798172 C T TLR1 Missense_Mutation p.E761K 0.41 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 4 38798180 38798180 C T TLR1 Nonsense_Mutation p.W758* 0.45 TCGA-D9-A6EA-06 4 39245958 39245958 C T WDR19 Missense_Mutation p.P838S 0.31 tolerated(0.53) benign(0.006) TCGA-D9-A6EA-06 4 40245097 40245097 G A RHOH Missense_Mutation p.E31K 0.59 tolerated(0.39) benign(0.092) TCGA-D9-A6EA-06 4 41621392 41621392 G A LIMCH1 Silent p.E290E 0.39 TCGA-D9-A6EA-06 4 42119601 42119601 C T BEND4 Silent p.G513G 0.36 TCGA-D9-A6EA-06 4 48035030 48035030 A C NIPAL1 Missense_Mutation p.N131H 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 4 677397 677397 C T MFSD7 Splice_Site p.X331_splice 0.31 TCGA-D9-A6EA-06 4 69817110 69817110 C T UGT2A3 Missense_Mutation p.M123I 0.34 tolerated(0.38) benign(0) TCGA-D9-A6EA-06 4 70715276 70715276 G A SULT1E1 Silent p.I125I 0.56 TCGA-D9-A6EA-06 4 73013148 73013148 G A NPFFR2 Missense_Mutation p.M396I 0.45 deleterious(0.03) probably_damaging(0.963) TCGA-D9-A6EA-06 4 73149255 73149255 G A ADAMTS3 Silent p.V1072V 0.33 TCGA-D9-A6EA-06 4 75681110 75681110 C T BTC Silent p.G80G 0.24 TCGA-D9-A6EA-06 4 76797696 76797696 G A PPEF2 Missense_Mutation p.P355L 0.48 tolerated(0.21) benign(0.046) TCGA-D9-A6EA-06 4 76924823 76924823 C T CXCL9 Silent p.G102G 0.30 TCGA-D9-A6EA-06 4 77247092 77247092 T C CCDC158 Silent p.L1025L 0.57 TCGA-D9-A6EA-06 4 80246948 80246948 C T NAA11 Missense_Mutation p.M28I 0.55 deleterious(0.04) benign(0.067) TCGA-D9-A6EA-06 4 8230222 8230222 C T SH3TC1 Missense_Mutation p.S934L 0.41 deleterious(0.02) possibly_damaging(0.876) TCGA-D9-A6EA-06 4 88415648 88415648 C T SPARCL1 Missense_Mutation p.D102N 0.57 tolerated(0.08) benign(0.287) TCGA-D9-A6EA-06 4 94376855 94376855 C T GRID2 Missense_Mutation p.R530C 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 4 99030457 99030457 C T STPG2 Splice_Site p.X130_splice 0.16 TCGA-D9-A6EA-06 5 101834251 101834251 C T SLCO6A1 Missense_Mutation p.E100K 0.11 deleterious(0.01) benign(0.184) TCGA-D9-A6EA-06 5 112440037 112440037 A C MCC Missense_Mutation p.L348R 0.87 deleterious(0) possibly_damaging(0.847) TCGA-D9-A6EA-06 5 112769748 112769748 G A TSSK1B Silent p.I263I 0.14 TCGA-D9-A6EA-06 5 121786772 121786772 G A SNCAIP Missense_Mutation p.D744N 0.61 deleterious(0) benign(0.309) TCGA-D9-A6EA-06 5 121786854 121786854 C T SNCAIP Missense_Mutation p.P771L 0.84 tolerated_low_confidence(0.08) benign(0.005) TCGA-D9-A6EA-06 5 126790295 126790295 C T MEGF10 Silent p.S1006S 0.84 TCGA-D9-A6EA-06 5 135692517 135692517 C T TRPC7 Missense_Mutation p.G187S 0.12 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EA-06 5 13717576 13717576 G A DNAH5 Silent p.L4185L 0.61 TCGA-D9-A6EA-06 5 13914067 13914067 C T DNAH5 Missense_Mutation p.E441K 0.41 possibly_damaging(0.637) TCGA-D9-A6EA-06 5 140222345 140222345 G A PCDHA8 Missense_Mutation p.R480Q 0.15 tolerated_low_confidence(0.09) benign(0.03) TCGA-D9-A6EA-06 5 140235907 140235907 G A PCDHA10 Missense_Mutation p.E92K 0.14 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D9-A6EA-06 5 140256596 140256596 G A PCDHA12 Silent p.E513E 0.83 TCGA-D9-A6EA-06 5 140308409 140308409 A G PCDHAC1 Silent p.P644P 0.79 TCGA-D9-A6EA-06 5 140683174 140683174 A G SLC25A2 Missense_Mutation p.F87L 0.81 tolerated(0.54) benign(0.174) TCGA-D9-A6EA-06 5 140720043 140720043 C T PCDHGA2 Missense_Mutation p.S502F 0.81 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D9-A6EA-06 5 140909190 140909190 G A DIAPH1 Silent p.L886L 0.80 TCGA-D9-A6EA-06 5 148699221 148699221 C G AFAP1L1 Missense_Mutation p.A519G 0.84 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EA-06 5 150947935 150947935 G A FAT2 Silent p.A186A 0.14 TCGA-D9-A6EA-06 5 161116137 161116137 C T GABRA6 Silent p.F136F 0.83 TCGA-D9-A6EA-06 5 168151452 168151452 C T SLIT3 Missense_Mutation p.E770K 0.09 deleterious(0.01) possibly_damaging(0.686) TCGA-D9-A6EA-06 5 169535244 169535244 T A FOXI1 Missense_Mutation p.S256T 0.41 deleterious(0.03) benign(0.345) TCGA-D9-A6EA-06 5 176332394 176332394 A C UIMC1 Silent p.V683V 0.38 TCGA-D9-A6EA-06 5 176631248 176631248 C T NSD1 Silent p.V397V 0.21 TCGA-D9-A6EA-06 5 178408596 178408596 T G GRM6 3'UTR 0.83 TCGA-D9-A6EA-06 5 179201279 179201279 C T MAML1 Missense_Mutation p.P818S 0.23 tolerated(0.97) benign(0.001) TCGA-D9-A6EA-06 5 179564662 179564662 G A RASGEF1C Silent p.P76P 0.27 TCGA-D9-A6EA-06 5 180338561 180338561 C T BTNL8 Missense_Mutation p.S207F 0.25 deleterious(0.03) probably_damaging(0.916) TCGA-D9-A6EA-06 5 21752163 21752163 G A CDH12 Missense_Mutation p.R690C 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-D9-A6EA-06 5 32053982 32053982 T G PDZD2 Silent p.L631L 0.71 TCGA-D9-A6EA-06 5 35727871 35727871 G A SPEF2 Silent p.Q1003Q 0.32 TCGA-D9-A6EA-06 5 36143410 36143410 A C LMBRD2 Missense_Mutation p.F14L 0.65 tolerated(0.14) probably_damaging(0.994) TCGA-D9-A6EA-06 5 38412643 38412643 G A EGFLAM Missense_Mutation p.E463K 0.52 tolerated(0.17) benign(0.072) TCGA-D9-A6EA-06 5 41019008 41019008 C T MROH2B Missense_Mutation p.D852N 0.27 tolerated(0.11) benign(0.069) TCGA-D9-A6EA-06 5 41065497 41065497 G A MROH2B Silent p.F99F 0.33 TCGA-D9-A6EA-06 5 41142807 41142807 A T C6 3'UTR 0.36 TCGA-D9-A6EA-06 5 41172415 41172415 C T C6 Silent p.R401R 0.54 TCGA-D9-A6EA-06 5 41176717 41176717 T A C6 Missense_Mutation p.N343I 0.35 deleterious(0.02) benign(0.119) TCGA-D9-A6EA-06 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.29 TCGA-D9-A6EA-06 5 465366 465366 C T EXOC3 Silent p.F639F 0.33 TCGA-D9-A6EA-06 5 49962878 49962878 G A PARP8 5'UTR 0.20 TCGA-D9-A6EA-06 5 50689453 50689453 C T ISL1 3'UTR 0.22 TCGA-D9-A6EA-06 5 52779351 52779351 G A FST Missense_Mutation p.D99N 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-D9-A6EA-06 5 57750757 57750757 A T PLK2 Missense_Mutation p.F616Y 0.68 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EA-06 5 63256409 63256409 G A HTR1A Silent p.L380L 0.70 TCGA-D9-A6EA-06 5 64954239 64954239 C G TRAPPC13 Silent p.T203T 0.26 TCGA-D9-A6EA-06 5 76003131 76003131 G A IQGAP2 Missense_Mutation p.G1574E 0.61 deleterious(0.02) probably_damaging(0.99) TCGA-D9-A6EA-06 5 78919109 78919109 G A PAPD4 Missense_Mutation p.G88S 0.20 tolerated_low_confidence(0.06) benign(0.001) TCGA-D9-A6EA-06 5 82816266 82816266 G A VCAN Missense_Mutation p.G714E 0.20 tolerated(0.12) benign(0.037) TCGA-D9-A6EA-06 5 89971215 89971215 G A GPR98 Missense_Mutation p.E1756K 0.62 possibly_damaging(0.896) TCGA-D9-A6EA-06 5 9044558 9044558 G A SEMA5A Missense_Mutation p.P1011L 0.52 tolerated(0.05) benign(0.146) TCGA-D9-A6EA-06 6 100901712 100901712 C T SIM1 Missense_Mutation p.E62K 0.28 tolerated(0.08) possibly_damaging(0.647) TCGA-D9-A6EA-06 6 10907864 10907864 G A SYCP2L Missense_Mutation p.D256N 0.44 deleterious(0.02) possibly_damaging(0.895) TCGA-D9-A6EA-06 6 109309808 109309808 G A SESN1 Missense_Mutation p.P503S 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 6 12121147 12121147 C T HIVEP1 Silent p.I373I 0.32 TCGA-D9-A6EA-06 6 12296435 12296435 C T EDN1 3'UTR 0.38 TCGA-D9-A6EA-06 6 125583982 125583982 G A TPD52L1 Silent p.T163T 0.12 TCGA-D9-A6EA-06 6 12933876 12933876 T G PHACTR1 Missense_Mutation p.F88V 0.41 deleterious_low_confidence(0.03) benign(0) TCGA-D9-A6EA-06 6 130761868 130761868 G A TMEM200A Missense_Mutation p.E101K 0.56 tolerated(0.72) benign(0.037) TCGA-D9-A6EA-06 6 132966164 132966164 C T TAAR1 Missense_Mutation p.D327N 0.57 tolerated(0.6) benign(0.003) TCGA-D9-A6EA-06 6 136599171 136599171 C T BCLAF1 Missense_Mutation p.R283Q 0.40 tolerated(0.17) benign(0.417) TCGA-D9-A6EA-06 6 150322712 150322712 G A RAET1K RNA 0.31 TCGA-D9-A6EA-06 6 150464597 150464597 G A PPP1R14C Nonsense_Mutation p.W90* 0.33 TCGA-D9-A6EA-06 6 152631541 152631541 G A SYNE1 Missense_Mutation p.S5670F 0.27 possibly_damaging(0.613) TCGA-D9-A6EA-06 6 153043440 153043440 G A MYCT1 3'UTR 0.25 TCGA-D9-A6EA-06 6 159462430 159462430 C T TAGAP Missense_Mutation p.D145N 0.44 tolerated(0.15) benign(0.4) TCGA-D9-A6EA-06 6 159650965 159650965 C T FNDC1 Silent p.F433F 0.61 TCGA-D9-A6EA-06 6 159655479 159655479 C T FNDC1 Missense_Mutation p.S1312F 0.29 deleterious(0) unknown(0) TCGA-D9-A6EA-06 6 161128794 161128794 C T PLG Missense_Mutation p.S83F 0.32 deleterious(0) possibly_damaging(0.756) TCGA-D9-A6EA-06 6 165703450 165703450 C T C6orf118 Silent p.L409L 0.66 TCGA-D9-A6EA-06 6 167789556 167789556 G A TCP10 Missense_Mutation p.P196S 0.27 tolerated(0.58) benign(0.424) TCGA-D9-A6EA-06 6 24570193 24570193 G A KIAA0319 Silent p.T643T 0.44 TCGA-D9-A6EA-06 6 24873936 24873936 G A FAM65B Missense_Mutation p.P65S 0.48 tolerated(0.82) benign(0.008) TCGA-D9-A6EA-06 6 25924106 25924106 C T SLC17A2 Silent p.G19G 0.22 TCGA-D9-A6EA-06 6 31664743 31664743 G T ABHD16A Missense_Mutation p.N137K 0.42 tolerated(0.18) benign(0.002) TCGA-D9-A6EA-06 6 35755649 35755649 C T CLPSL1 Silent p.F76F 0.15 TCGA-D9-A6EA-06 6 36106512 36106512 C T MAPK13 Missense_Mutation p.P266S 0.44 tolerated(0.07) possibly_damaging(0.699) TCGA-D9-A6EA-06 6 38840805 38840805 C T DNAH8 Missense_Mutation p.P2237L 0.39 probably_damaging(0.943) TCGA-D9-A6EA-06 6 42796515 42796515 C T GLTSCR1L Silent p.S148S 0.44 TCGA-D9-A6EA-06 6 42992842 42992842 C T RRP36 Nonsense_Mutation p.Q84* 0.31 TCGA-D9-A6EA-06 6 49666088 49666088 C T CRISP2 Missense_Mutation p.G135E 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 6 51910917 51910917 G A PKHD1 Missense_Mutation p.S826F 0.38 deleterious(0) possibly_damaging(0.897) TCGA-D9-A6EA-06 6 55623867 55623867 C T BMP5 Missense_Mutation p.G384E 0.36 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 6 55638995 55638995 T C BMP5 Silent p.G293G 0.39 TCGA-D9-A6EA-06 6 69758194 69758194 C T BAI3 Missense_Mutation p.P742L 0.67 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 6 70034817 70034817 C T BAI3 Silent p.F956F 0.62 TCGA-D9-A6EA-06 6 73904856 73904856 G A KCNQ5 Missense_Mutation p.E859K 0.33 deleterious_low_confidence(0.03) benign(0.337) TCGA-D9-A6EA-06 6 73905237 73905237 C T KCNQ5 3'UTR 0.65 TCGA-D9-A6EA-06 6 75843694 75843694 C T COL12A1 Silent p.R1848R 0.27 TCGA-D9-A6EA-06 6 76024143 76024143 C T FILIP1 Missense_Mutation p.E469K 0.59 deleterious(0) possibly_damaging(0.492) TCGA-D9-A6EA-06 6 76660395 76660395 C T IMPG1 Missense_Mutation p.G570S 0.19 tolerated(0.1) possibly_damaging(0.666) TCGA-D9-A6EA-06 6 80203405 80203405 C T LCA5 Silent p.R261R 0.22 TCGA-D9-A6EA-06 6 88854861 88854861 G A CNR1 Missense_Mutation p.P45S 0.46 tolerated_low_confidence(0.42) benign(0.001) TCGA-D9-A6EA-06 6 97587155 97587155 C T KLHL32 Silent p.I620I 0.25 TCGA-D9-A6EA-06 6 9897144 9897144 C T OFCC1 Intron 0.50 TCGA-D9-A6EA-06 7 100007119 100007119 C T ZCWPW1 Nonsense_Mutation p.W267* 0.34 TCGA-D9-A6EA-06 7 100350221 100350221 C T ZAN Silent p.T831T 0.30 TCGA-D9-A6EA-06 7 100350690 100350690 G A ZAN Missense_Mutation p.E988K 0.50 unknown(0) TCGA-D9-A6EA-06 7 100681061 100681061 C T MUC17 Missense_Mutation p.L2122F 0.47 unknown(0) TCGA-D9-A6EA-06 7 103179671 103179671 G A RELN Missense_Mutation p.P2345L 0.46 deleterious(0.01) possibly_damaging(0.75) TCGA-D9-A6EA-06 7 105662801 105662801 G A CDHR3 Silent p.R661R 0.50 TCGA-D9-A6EA-06 7 107600255 107600255 G A LAMB1 Missense_Mutation p.S780L 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-D9-A6EA-06 7 107871528 107871528 G A NRCAM Missense_Mutation p.P166L 0.42 deleterious(0.02) probably_damaging(0.936) TCGA-D9-A6EA-06 7 111161452 111161452 C T IMMP2L Missense_Mutation p.G18S 0.60 tolerated(0.79) probably_damaging(0.949) TCGA-D9-A6EA-06 7 115580985 115580985 C T TFEC Missense_Mutation p.E222K 0.23 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 7 115581000 115581000 G A TFEC Intron 0.21 TCGA-D9-A6EA-06 7 127847972 127847972 G A MIR129-1 RNA 0.20 TCGA-D9-A6EA-06 7 129760637 129760637 C T KLHDC10 Missense_Mutation p.P175L 0.57 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EA-06 7 129769350 129769350 C T KLHDC10 Silent p.F351F 0.46 TCGA-D9-A6EA-06 7 136700673 136700673 G A CHRM2 Missense_Mutation p.G354E 0.30 tolerated(0.18) benign(0.41) TCGA-D9-A6EA-06 7 138745678 138745678 G A ZC3HAV1 Intron 0.55 TCGA-D9-A6EA-06 7 141730496 141730496 G A MGAM Missense_Mutation p.R470K 0.57 tolerated(0.08) benign(0.078) TCGA-D9-A6EA-06 7 142423259 142423259 G A TRBV27 Missense_Mutation p.G15E 0.51 TCGA-D9-A6EA-06 7 142750170 142750170 C T OR6V1 Silent p.L245L 0.37 TCGA-D9-A6EA-06 7 143772195 143772195 G A OR2A25 Missense_Mutation p.E295K 0.35 deleterious(0) possibly_damaging(0.627) TCGA-D9-A6EA-06 7 14880876 14880876 C T DGKB Missense_Mutation p.E5K 0.50 tolerated(0.58) benign(0.15) TCGA-D9-A6EA-06 7 148979285 148979285 C T ZNF783 Nonsense_Mutation p.Q498* 0.34 TCGA-D9-A6EA-06 7 149417952 149417952 C T KRBA1 Missense_Mutation p.L61F 0.21 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EA-06 7 150269390 150269390 G A GIMAP4 Missense_Mutation p.E78K 0.56 tolerated(0.08) benign(0.063) TCGA-D9-A6EA-06 7 150555993 150555993 G A AOC1 Silent p.R571R 0.52 TCGA-D9-A6EA-06 7 151254171 151254171 C T PRKAG2 3'UTR 0.53 TCGA-D9-A6EA-06 7 154862691 154862691 G A HTR5A Missense_Mutation p.D28N 0.55 tolerated(0.57) benign(0.001) TCGA-D9-A6EA-06 7 157414093 157414093 C T PTPRN2 Missense_Mutation p.E769K 0.34 tolerated(0.11) possibly_damaging(0.888) TCGA-D9-A6EA-06 7 16841388 16841388 G T AGR2 Silent p.L11L 0.48 TCGA-D9-A6EA-06 7 23401333 23401333 C T IGF2BP3 Missense_Mutation p.G105R 0.58 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 7 24870477 24870477 G A OSBPL3 Silent p.Y598Y 0.37 TCGA-D9-A6EA-06 7 27168930 27168930 G A HOXA4 Missense_Mutation p.P293S 0.54 tolerated_low_confidence(0.2) benign(0.001) TCGA-D9-A6EA-06 7 28857705 28857705 G A CREB5 Silent p.L424L 0.51 TCGA-D9-A6EA-06 7 31121325 31121325 C T ADCYAP1R1 Intron 0.32 TCGA-D9-A6EA-06 7 36465643 36465643 C T ANLN Missense_Mutation p.S923L 0.33 deleterious(0) benign(0.24) TCGA-D9-A6EA-06 7 43503375 43503375 C T HECW1 Missense_Mutation p.A923V 0.30 tolerated(0.09) benign(0.15) TCGA-D9-A6EA-06 7 44193026 44193026 C T GCK Missense_Mutation p.E29K 0.56 tolerated(0.06) benign(0.005) TCGA-D9-A6EA-06 7 47894813 47894813 G A PKD1L1 Silent p.P1547P 0.53 TCGA-D9-A6EA-06 7 48311856 48311856 G A ABCA13 Missense_Mutation p.E865K 0.50 benign(0.066) TCGA-D9-A6EA-06 7 53103890 53103890 G A POM121L12 Missense_Mutation p.E176K 0.68 tolerated(0.09) benign(0) TCGA-D9-A6EA-06 7 63727047 63727047 C T ZNF679 Missense_Mutation p.H346Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EA-06 7 75203129 75203129 C T HIP1 Missense_Mutation p.V228I 0.44 deleterious(0.01) possibly_damaging(0.698) TCGA-D9-A6EA-06 7 75203130 75203130 C T HIP1 Silent p.Q227Q 0.44 TCGA-D9-A6EA-06 7 81381564 81381564 C T HGF Missense_Mutation p.S166N 0.26 tolerated(0.17) possibly_damaging(0.488) TCGA-D9-A6EA-06 7 81381566 81381566 C T HGF Silent p.S165S 0.26 TCGA-D9-A6EA-06 7 84666268 84666268 C T SEMA3D Silent p.K376K 0.48 TCGA-D9-A6EA-06 7 86493599 86493599 C T GRM3 Silent p.S856S 0.49 TCGA-D9-A6EA-06 7 91715573 91715573 T C AKAP9 Missense_Mutation p.F3019S 0.40 benign(0.001) TCGA-D9-A6EA-06 7 92027925 92027925 C T ANKIB1 Missense_Mutation p.H978Y 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-D9-A6EA-06 7 92848776 92848776 G A HEPACAM2 Intron 0.46 TCGA-D9-A6EA-06 7 94953763 94953763 G A PON1 Missense_Mutation p.L9F 0.65 tolerated(0.05) benign(0.016) TCGA-D9-A6EA-06 7 95750447 95750447 G A SLC25A13 3'UTR 0.35 TCGA-D9-A6EA-06 7 99454470 99454470 C T CYP3A43 Silent p.F271F 0.53 TCGA-D9-A6EA-06 8 103663574 103663574 G A KLF10 Missense_Mutation p.S329L 0.41 tolerated(0.16) benign(0) TCGA-D9-A6EA-06 8 10465882 10465882 G A RP1L1 Missense_Mutation p.P1909L 0.50 unknown(0) TCGA-D9-A6EA-06 8 10756047 10756047 C T XKR6 Silent p.T447T 0.55 TCGA-D9-A6EA-06 8 110492257 110492257 G A PKHD1L1 Missense_Mutation p.M3072I 0.29 tolerated(0.07) benign(0.005) TCGA-D9-A6EA-06 8 110509192 110509192 G A PKHD1L1 Missense_Mutation p.G3458R 0.38 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EA-06 8 120774830 120774830 G A TAF2 Missense_Mutation p.R795C 0.29 deleterious(0) benign(0.283) TCGA-D9-A6EA-06 8 125025849 125025849 G A FER1L6 Intron 0.41 TCGA-D9-A6EA-06 8 130764977 130764977 T C GSDMC Missense_Mutation p.N271D 0.11 tolerated(0.63) benign(0) TCGA-D9-A6EA-06 8 130777906 130777906 C T GSDMC Missense_Mutation p.G180R 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A6EA-06 8 13162787 13162787 C T DLC1 Missense_Mutation p.E447K 0.37 tolerated(1) possibly_damaging(0.702) TCGA-D9-A6EA-06 8 131848633 131848633 G A ADCY8 Silent p.S855S 0.31 TCGA-D9-A6EA-06 8 132051895 132051895 G A ADCY8 Silent p.L229L 0.68 TCGA-D9-A6EA-06 8 139277951 139277951 C T FAM135B Missense_Mutation p.E98K 0.35 tolerated(0.26) benign(0.261) TCGA-D9-A6EA-06 8 13965710 13965710 C T SGCZ Silent p.E194E 0.40 TCGA-D9-A6EA-06 8 143958486 143958486 C T CYP11B1 Missense_Mutation p.S183N 0.30 deleterious(0.01) benign(0.248) TCGA-D9-A6EA-06 8 144800414 144800414 C T MAPK15 Silent p.L76L 0.37 TCGA-D9-A6EA-06 8 144943513 144943513 C T EPPK1 Silent p.A1303A 0.14 TCGA-D9-A6EA-06 8 145757761 145757761 C T ARHGAP39 Missense_Mutation p.E970K 0.40 deleterious(0) benign(0.362) TCGA-D9-A6EA-06 8 146067840 146067840 T A ZNF7 Missense_Mutation p.F450I 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 8 23003217 23003217 T G TNFRSF10D Missense_Mutation p.K234Q 0.25 tolerated(0.48) possibly_damaging(0.756) TCGA-D9-A6EA-06 8 25364203 25364203 C T CDCA2 Missense_Mutation p.S674F 0.51 tolerated(1) benign(0.003) TCGA-D9-A6EA-06 8 26221279 26221279 C T PPP2R2A Missense_Mutation p.S292F 0.44 deleterious(0.03) possibly_damaging(0.876) TCGA-D9-A6EA-06 8 26628171 26628171 G A ADRA1A Missense_Mutation p.P299L 0.35 deleterious(0.01) benign(0.346) TCGA-D9-A6EA-06 8 30924625 30924625 C T WRN Missense_Mutation p.S194F 0.42 deleterious(0.01) benign(0.106) TCGA-D9-A6EA-06 8 3141767 3141767 G C CSMD1 Missense_Mutation p.S1351C 0.52 probably_damaging(0.944) TCGA-D9-A6EA-06 8 40554838 40554838 G A ZMAT4 Missense_Mutation p.S92F 0.83 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 8 52321541 52321541 G A PXDNL Silent p.V881V 0.58 TCGA-D9-A6EA-06 8 54934667 54934667 G A TCEA1 Missense_Mutation p.R7C 0.25 deleterious(0) benign(0.012) TCGA-D9-A6EA-06 8 56668963 56668963 T A TMEM68 Missense_Mutation p.E111D 0.31 deleterious(0) probably_damaging(0.93) TCGA-D9-A6EA-06 8 68992730 68992730 G A PREX2 Silent p.S565S 0.31 TCGA-D9-A6EA-06 8 71646181 71646181 C T XKR9 Missense_Mutation p.S215L 0.17 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EA-06 8 77617773 77617773 G A ZFHX4 Missense_Mutation p.D484N 0.26 possibly_damaging(0.728) TCGA-D9-A6EA-06 8 88886202 88886202 C T DCAF4L2 5'UTR 0.42 TCGA-D9-A6EA-06 8 92999199 92999199 C T RUNX1T1 Silent p.G342G 0.26 TCGA-D9-A6EA-06 8 97263174 97263174 G A MTERFD1 Missense_Mutation p.H213Y 0.15 tolerated(0.29) benign(0.001) TCGA-D9-A6EA-06 8 99139910 99139910 C T POP1 Missense_Mutation p.S77F 0.18 tolerated(0.17) possibly_damaging(0.474) TCGA-D9-A6EA-06 8 99608308 99608308 A T STK3 Nonsense_Mutation p.C286* 0.38 TCGA-D9-A6EA-06 9 100857228 100857228 G A TRIM14 Silent p.P207P 0.91 TCGA-D9-A6EA-06 9 111670604 111670604 G A IKBKAP Missense_Mutation p.H481Y 1.00 tolerated(1) benign(0.009) TCGA-D9-A6EA-06 9 112899221 112899221 C T PALM2-AKAP2 Missense_Mutation p.P466L 0.92 deleterious(0) probably_damaging(1) TCGA-D9-A6EA-06 9 116812057 116812057 C T ZNF618 Silent p.I732I 0.91 TCGA-D9-A6EA-06 9 119124871 119124871 G A PAPPA Missense_Mutation p.G1450R 0.87 tolerated(0.26) probably_damaging(0.988) TCGA-D9-A6EA-06 9 125681461 125681461 G A ZBTB26 Silent p.I251I 0.87 TCGA-D9-A6EA-06 9 129642549 129642549 C T ZBTB34 Nonsense_Mutation p.Q287* 0.97 TCGA-D9-A6EA-06 9 136513031 136513031 G A DBH Missense_Mutation p.G363E 0.74 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EA-06 9 138011442 138011442 C T OLFM1 Silent p.H274H 0.88 TCGA-D9-A6EA-06 9 139741099 139741099 C T C9orf172 Silent p.L745L 1.00 TCGA-D9-A6EA-06 9 140006201 140006201 T G DPP7 Silent p.R405R 0.17 TCGA-D9-A6EA-06 9 21239370 21239370 C T IFNA14 Missense_Mutation p.D189N 0.85 tolerated(0.06) benign(0.027) TCGA-D9-A6EA-06 9 33464972 33464972 G A NOL6 Missense_Mutation p.S895F 0.96 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EA-06 9 34490046 34490046 G A DNAI1 Missense_Mutation p.G142E 1.00 tolerated(1) benign(0) TCGA-D9-A6EA-06 9 35957893 35957893 G A OR2S2 Missense_Mutation p.S68F 0.92 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EA-06 9 77407641 77407641 T C TRPM6 Missense_Mutation p.N813D 0.86 tolerated(0.39) benign(0.003) TCGA-D9-A6EA-06 9 77455013 77455013 C T TRPM6 Silent p.E157E 0.82 TCGA-D9-A6EA-06 9 95003157 95003157 A G IARS Silent p.C1088C 0.92 TCGA-D9-A6EA-06 X 100169470 100169470 G A XKRX Nonsense_Mutation p.Q403* 0.89 TCGA-D9-A6EA-06 X 100169471 100169471 G A XKRX Silent p.F402F 0.91 TCGA-D9-A6EA-06 X 100169977 100169977 G A XKRX Missense_Mutation p.R234C 0.89 deleterious(0) possibly_damaging(0.825) TCGA-D9-A6EA-06 X 10058885 10058885 G A WWC3 Missense_Mutation p.R151Q 0.83 deleterious(0.01) possibly_damaging(0.892) TCGA-D9-A6EA-06 X 101972234 101972234 C T GPRASP2 Missense_Mutation p.R813C 0.88 deleterious(0) possibly_damaging(0.846) TCGA-D9-A6EA-06 X 105280496 105280496 A T SERPINA7 Missense_Mutation p.V185D 0.84 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A6EA-06 X 107431884 107431884 C T COL4A6 Missense_Mutation p.D485N 0.82 possibly_damaging(0.811) TCGA-D9-A6EA-06 X 115303764 115303764 G A AGTR2 Silent p.K77K 0.89 TCGA-D9-A6EA-06 X 115590032 115590032 C T SLC6A14 Missense_Mutation p.R614C 0.87 deleterious(0.02) possibly_damaging(0.714) TCGA-D9-A6EA-06 X 125685446 125685446 G A DCAF12L1 Silent p.F382F 0.94 TCGA-D9-A6EA-06 X 132351040 132351040 C T TFDP3 3'UTR 0.81 TCGA-D9-A6EA-06 X 140985487 140985487 C T MAGEC3 Missense_Mutation p.P601S 0.84 tolerated(0.14) possibly_damaging(0.504) TCGA-D9-A6EA-06 X 148068950 148068950 G A AFF2 Missense_Mutation p.G1226E 0.98 deleterious(0.03) possibly_damaging(0.456) TCGA-D9-A6EA-06 X 153880489 153880489 G A CTAG2 3'UTR 0.77 TCGA-D9-A6EA-06 X 224139 224139 G A GTPBP6 Silent p.L210L 0.37 TCGA-D9-A6EA-06 X 27999379 27999379 C G DCAF8L1 Missense_Mutation p.E25Q 0.86 deleterious_low_confidence(0.01) benign(0.117) TCGA-D9-A6EA-06 X 301559 301559 G A PPP2R3B Missense_Mutation p.A431V 0.57 deleterious(0) benign(0.254) TCGA-D9-A6EA-06 X 35974255 35974255 A T CXorf22 Missense_Mutation p.K451I 0.90 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EA-06 X 41200787 41200787 G - DDX3X Frame_Shift_Del p.A68Rfs*153 0.44 TCGA-D9-A6EA-06 X 44703984 44703984 G A DUSP21 3'UTR 0.87 TCGA-D9-A6EA-06 X 47307856 47307856 G A ZNF41 Missense_Mutation p.P438L 0.97 deleterious(0) probably_damaging(0.985) TCGA-D9-A6EA-06 X 47500672 47500672 A T ELK1 Missense_Mutation p.Y57N 0.88 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EA-06 X 49958047 49958047 C T AKAP4 Silent p.K439K 0.93 TCGA-D9-A6EA-06 X 53563540 53563540 G A HUWE1 Missense_Mutation p.P4076S 0.87 unknown(0) TCGA-D9-A6EA-06 X 54161361 54161361 G A FAM120C Missense_Mutation p.P507S 0.94 tolerated(0.09) benign(0.062) TCGA-D9-A6EA-06 X 65392291 65392291 G A HEPH Missense_Mutation p.D142N 0.88 tolerated(0.22) benign(0.005) TCGA-D9-A6EA-06 X 70514279 70514279 G T NONO Missense_Mutation p.R184L 0.84 deleterious(0) probably_damaging(0.956) TCGA-D9-A6EA-06 X 73961452 73961452 C T KIAA2022 Silent p.Q980Q 0.79 TCGA-D9-A6EA-06 X 75004259 75004259 C A MAGEE2 Missense_Mutation p.D210Y 0.80 tolerated(0.1) possibly_damaging(0.757) TCGA-D9-A6EA-06 X 84560874 84560874 C T POF1B Missense_Mutation p.D454N 0.84 deleterious(0.05) probably_damaging(0.923) TCGA-D9-A6EA-06 X 91133869 91133869 C T PCDH11X Missense_Mutation p.S877F 0.97 deleterious(0.01) possibly_damaging(0.528) TCGA-D9-A6EA-06 X 9714140 9714140 G A GPR143 Missense_Mutation p.P201L 0.86 deleterious(0.02) probably_damaging(0.923) TCGA-D9-A6EC-06 10 101150158 101150158 A C CNNM1 Missense_Mutation p.T924P 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-D9-A6EC-06 10 101591524 101591524 G A ABCC2 Missense_Mutation p.D1014N 0.91 tolerated(0.77) benign(0.001) TCGA-D9-A6EC-06 10 101993115 101993115 T C CWF19L1 Missense_Mutation p.S496G 0.43 deleterious(0.01) possibly_damaging(0.462) TCGA-D9-A6EC-06 10 102248687 102248687 G A SEC31B Silent p.P1072P 0.96 TCGA-D9-A6EC-06 10 102249852 102249852 T G SEC31B Missense_Mutation p.S960R 0.22 deleterious(0.03) benign(0.021) TCGA-D9-A6EC-06 10 102685839 102685839 T G FAM178A Intron 0.40 TCGA-D9-A6EC-06 10 104172186 104172186 C T PSD Missense_Mutation p.R567Q 0.89 tolerated(0.21) benign(0.412) TCGA-D9-A6EC-06 10 104678309 104678309 T G CNNM2 Silent p.T24T 0.33 TCGA-D9-A6EC-06 10 105037837 105037837 A C INA Missense_Mutation p.K290T 0.19 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 10 105048308 105048308 A G INA Missense_Mutation p.K461R 0.45 tolerated(0.24) benign(0.375) TCGA-D9-A6EC-06 10 105160235 105160235 A G PDCD11 Missense_Mutation p.R62G 0.12 tolerated(0.1) benign(0.004) TCGA-D9-A6EC-06 10 105651964 105651964 A C OBFC1 Missense_Mutation p.F267C 0.50 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 10 105763182 105763182 A G SLK Missense_Mutation p.D749G 0.27 deleterious(0.03) probably_damaging(0.91) TCGA-D9-A6EC-06 10 106139911 106139911 A G CCDC147 Missense_Mutation p.K433R 0.09 deleterious(0) possibly_damaging(0.835) TCGA-D9-A6EC-06 10 106675683 106675683 A T SORCS3 Missense_Mutation p.K263I 0.86 deleterious(0) benign(0.155) TCGA-D9-A6EC-06 10 108536385 108536385 A C SORCS1 Silent p.T264T 0.30 TCGA-D9-A6EC-06 10 11505488 11505488 C T USP6NL Missense_Mutation p.R497K 0.47 tolerated(0.2) benign(0.024) TCGA-D9-A6EC-06 10 115348720 115348720 A T NRAP 3'UTR 0.38 TCGA-D9-A6EC-06 10 115527142 115527142 A C PLEKHS1 Missense_Mutation p.K82T 0.24 tolerated(0.33) possibly_damaging(0.895) TCGA-D9-A6EC-06 10 115885713 115885713 A G C10orf118 Missense_Mutation p.S849P 0.38 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 10 115970694 115970694 C T TDRD1 Missense_Mutation p.A543V 0.97 tolerated(0.12) benign(0.06) TCGA-D9-A6EC-06 10 116417948 116417948 G A ABLIM1 Silent p.F4F 0.43 TCGA-D9-A6EC-06 10 116595298 116595298 T A FAM160B1 Nonsense_Mutation p.C99* 0.47 TCGA-D9-A6EC-06 10 118319964 118319964 A C PNLIP Missense_Mutation p.K366T 0.24 tolerated(0.11) benign(0.008) TCGA-D9-A6EC-06 10 118674927 118674927 G A KIAA1598 Missense_Mutation p.H422Y 0.39 tolerated(0.2) possibly_damaging(0.794) TCGA-D9-A6EC-06 10 11894050 11894050 C T PROSER2 5'UTR 0.42 TCGA-D9-A6EC-06 10 12077485 12077485 T G UPF2 5'UTR 0.08 TCGA-D9-A6EC-06 10 124399730 124399730 C T DMBT1 Nonsense_Mutation p.Q2244* 0.85 TCGA-D9-A6EC-06 10 124909093 124909093 C T HMX2 Silent p.P92P 0.35 TCGA-D9-A6EC-06 10 124922160 124922160 C T BUB3 Missense_Mutation p.P263S 0.85 tolerated(0.05) benign(0.019) TCGA-D9-A6EC-06 10 125801902 125801902 G A CHST15 Silent p.L316L 0.96 TCGA-D9-A6EC-06 10 12595299 12595299 G A CAMK1D Silent p.K56K 0.60 TCGA-D9-A6EC-06 10 126090374 126090374 A G OAT Missense_Mutation p.L312P 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A6EC-06 10 127724863 127724863 T G ADAM12 Missense_Mutation p.N797T 0.15 tolerated(0.3) benign(0.006) TCGA-D9-A6EC-06 10 128973962 128973962 C T FAM196A Missense_Mutation p.G233E 0.50 tolerated(0.09) benign(0.191) TCGA-D9-A6EC-06 10 129903870 129903870 G A MKI67 Silent p.G2078G 0.88 TCGA-D9-A6EC-06 10 13152313 13152313 T G OPTN Missense_Mutation p.F69C 0.17 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 10 131565067 131565067 C T MGMT Missense_Mutation p.P175S 0.88 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 10 133058545 133058545 G A TCERG1L Missense_Mutation p.P278L 0.89 deleterious(0.01) probably_damaging(0.928) TCGA-D9-A6EC-06 10 134941914 134941914 C T GPR123 Silent p.F194F 0.81 TCGA-D9-A6EC-06 10 135026251 135026251 G A KNDC1 Missense_Mutation p.G1423E 0.89 tolerated(0.22) benign(0.235) TCGA-D9-A6EC-06 10 135096647 135096647 G A TUBGCP2 Missense_Mutation p.P770S 0.88 deleterious(0.04) probably_damaging(0.95) TCGA-D9-A6EC-06 10 13542024 13542024 C T BEND7 Missense_Mutation p.D16N 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 10 135440180 135440180 G A FRG2B Missense_Mutation p.P23S 0.09 tolerated(0.43) benign(0.003) TCGA-D9-A6EC-06 10 14861911 14861911 A G CDNF 3'Flank 0.57 TCGA-D9-A6EC-06 10 16948225 16948225 A C CUBN Missense_Mutation p.F2630C 0.07 tolerated(0.07) probably_damaging(0.926) TCGA-D9-A6EC-06 10 17083113 17083113 T G CUBN Silent p.A1312A 0.46 TCGA-D9-A6EC-06 10 17891717 17891717 A C MRC1L1 Missense_Mutation p.S400R 0.16 probably_damaging(0.988) TCGA-D9-A6EC-06 10 18254450 18254450 A G SLC39A12 Missense_Mutation p.I194M 0.07 deleterious(0.05) benign(0.265) TCGA-D9-A6EC-06 10 21104619 21104619 C T NEBL Missense_Mutation p.A726T 0.46 deleterious(0.02) probably_damaging(0.923) TCGA-D9-A6EC-06 10 21309073 21309073 C T NEBL Silent p.L40L 0.44 TCGA-D9-A6EC-06 10 21906135 21906135 A C MLLT10 Missense_Mutation p.K233T 0.37 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 10 22608868 22608868 G A COMMD3 Missense_Mutation p.D177N 0.47 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 10 24762678 24762678 G A KIAA1217 Silent p.R456R 0.47 TCGA-D9-A6EC-06 10 24889827 24889827 C T ARHGAP21 Silent p.Q960Q 0.40 TCGA-D9-A6EC-06 10 25888072 25888072 C T GPR158 Missense_Mutation p.P1173S 0.46 deleterious(0) probably_damaging(0.937) TCGA-D9-A6EC-06 10 26822439 26822439 G A APBB1IP Silent p.K295K 0.30 TCGA-D9-A6EC-06 10 26822440 26822440 G A APBB1IP Missense_Mutation p.E296K 0.30 deleterious(0) possibly_damaging(0.893) TCGA-D9-A6EC-06 10 26993660 26993660 C T PDSS1 Missense_Mutation p.R73C 0.42 deleterious(0.04) benign(0.001) TCGA-D9-A6EC-06 10 26998699 26998699 T G PDSS1 Splice_Site p.X156_splice 0.17 TCGA-D9-A6EC-06 10 27059205 27059205 T C ABI1 Missense_Mutation p.S183G 0.26 deleterious(0) benign(0.345) TCGA-D9-A6EC-06 10 27436303 27436303 C T YME1L1 Intron 0.52 TCGA-D9-A6EC-06 10 27497254 27497254 A G ACBD5 Missense_Mutation p.L442P 0.07 deleterious(0.01) probably_damaging(0.936) TCGA-D9-A6EC-06 10 27538529 27538529 C T RP11-85G18.6 Intron 0.49 TCGA-D9-A6EC-06 10 28023458 28023458 G A MKX Silent p.S255S 0.46 TCGA-D9-A6EC-06 10 28228901 28228901 G A ARMC4 Silent p.I674I 0.20 TCGA-D9-A6EC-06 10 28272774 28272774 C T ARMC4 Missense_Mutation p.G273S 0.40 deleterious(0.01) benign(0.047) TCGA-D9-A6EC-06 10 28272878 28272878 G A ARMC4 Missense_Mutation p.P238L 0.17 tolerated(0.06) possibly_damaging(0.557) TCGA-D9-A6EC-06 10 28358748 28358748 C T MPP7 Missense_Mutation p.R386Q 0.47 tolerated(0.5) possibly_damaging(0.877) TCGA-D9-A6EC-06 10 28378660 28378660 C T MPP7 Missense_Mutation p.E355K 0.56 tolerated(0.05) probably_damaging(0.997) TCGA-D9-A6EC-06 10 28884945 28884945 C T WAC Silent p.V298V 0.46 TCGA-D9-A6EC-06 10 30317161 30317161 C T KIAA1462 Missense_Mutation p.G639E 0.47 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 10 30749632 30749632 C T MAP3K8 Intron 0.63 TCGA-D9-A6EC-06 10 31138114 31138114 T G ZNF438 Missense_Mutation p.K407T 0.31 tolerated(0.05) possibly_damaging(0.462) TCGA-D9-A6EC-06 10 31815679 31815679 T G ZEB1 Missense_Mutation p.H955Q 0.11 deleterious(0) possibly_damaging(0.521) TCGA-D9-A6EC-06 10 33136832 33136832 A C C10ORF68 Silent p.R497R 0.14 TCGA-D9-A6EC-06 10 33475264 33475264 T G NRP1 Missense_Mutation p.K739Q 0.30 tolerated(0.34) probably_damaging(0.985) TCGA-D9-A6EC-06 10 33502344 33502344 C T NRP1 Missense_Mutation p.M528I 0.43 tolerated(0.3) benign(0.018) TCGA-D9-A6EC-06 10 37430901 37430901 G A ANKRD30A Missense_Mutation p.R303K 0.29 tolerated(0.18) benign(0.009) TCGA-D9-A6EC-06 10 37506663 37506663 G A ANKRD30A Missense_Mutation p.D986N 0.35 tolerated(0.06) possibly_damaging(0.821) TCGA-D9-A6EC-06 10 37520438 37520438 C T ANKRD30A 3'UTR 0.21 TCGA-D9-A6EC-06 10 38120920 38120920 G A ZNF248 Nonsense_Mutation p.Q455* 0.28 TCGA-D9-A6EC-06 10 43088697 43088697 G A ZNF33B Silent p.T567T 0.49 TCGA-D9-A6EC-06 10 43882357 43882357 T G HNRNPF Silent p.R326R 0.11 TCGA-D9-A6EC-06 10 46322014 46322014 G A AGAP4 Silent p.I447I 0.86 TCGA-D9-A6EC-06 10 48390587 48390587 C T RBP3 Silent p.E97E 0.85 TCGA-D9-A6EC-06 10 50121417 50121417 A G LRRC18 Intron 0.53 TCGA-D9-A6EC-06 10 50315771 50315771 G A VSTM4 Missense_Mutation p.L109F 0.96 deleterious(0.04) probably_damaging(0.95) TCGA-D9-A6EC-06 10 5042652 5042652 C T AKR1C2 Intron 0.52 TCGA-D9-A6EC-06 10 50531940 50531940 C T C10orf71 Silent p.I450I 0.93 TCGA-D9-A6EC-06 10 50531990 50531990 G A C10orf71 Missense_Mutation p.R467Q 0.84 tolerated(0.58) benign(0.001) TCGA-D9-A6EC-06 10 50532597 50532597 G A C10orf71 Silent p.E669E 0.82 TCGA-D9-A6EC-06 10 50594855 50594855 G A DRGX Missense_Mutation p.A100V 0.84 tolerated(0.25) benign(0.03) TCGA-D9-A6EC-06 10 50723569 50723569 G A ERCC6-PGBD3 Missense_Mutation p.P999L 1.00 tolerated_low_confidence(0.2) unknown(0) TCGA-D9-A6EC-06 10 5203869 5203869 C T AKR1CL1 Missense_Mutation p.G110R 0.31 deleterious(0.04) benign(0.033) TCGA-D9-A6EC-06 10 5246403 5246403 C T AKR1C4 Missense_Mutation p.L106F 0.42 deleterious(0.03) probably_damaging(0.978) TCGA-D9-A6EC-06 10 52580383 52580383 G A A1CF Nonsense_Mutation p.R274* 0.76 TCGA-D9-A6EC-06 10 52595994 52595994 C T A1CF Silent p.K156K 0.87 TCGA-D9-A6EC-06 10 54040660 54040660 C T PRKG1 Silent p.L505L 0.72 TCGA-D9-A6EC-06 10 5960343 5960343 A C FBXO18 Missense_Mutation p.I719L 0.20 deleterious(0.01) possibly_damaging(0.891) TCGA-D9-A6EC-06 10 61014055 61014055 C T FAM13C Intron 0.85 TCGA-D9-A6EC-06 10 61830063 61830063 C T ANK3 Missense_Mutation p.E3526K 0.55 probably_damaging(0.956) TCGA-D9-A6EC-06 10 61833173 61833173 C T ANK3 Missense_Mutation p.G2489E 0.63 benign(0.266) TCGA-D9-A6EC-06 10 61833602 61833602 A T ANK3 Missense_Mutation p.I2346N 0.29 benign(0.367) TCGA-D9-A6EC-06 10 61834252 61834252 G A ANK3 Silent p.G2129G 0.27 TCGA-D9-A6EC-06 10 61834567 61834567 G A ANK3 Silent p.S2024S 0.55 TCGA-D9-A6EC-06 10 61834568 61834568 G A ANK3 Missense_Mutation p.S2024F 0.55 benign(0.403) TCGA-D9-A6EC-06 10 62021645 62021645 C T ANK3 Missense_Mutation p.R257Q 0.54 probably_damaging(0.998) TCGA-D9-A6EC-06 10 62023597 62023597 G A ANK3 Missense_Mutation p.S232L 0.62 probably_damaging(0.998) TCGA-D9-A6EC-06 10 6263407 6263407 A G PFKFB3 Missense_Mutation p.S299G 0.14 probably_damaging(0.96) TCGA-D9-A6EC-06 10 64000927 64000927 T C RTKN2 Missense_Mutation p.D115G 0.24 tolerated(0.12) benign(0.107) TCGA-D9-A6EC-06 10 6498775 6498775 C T PRKCQ Splice_Site p.X503_splice 0.39 TCGA-D9-A6EC-06 10 6528086 6528086 G A PRKCQ Missense_Mutation p.H271Y 0.36 deleterious(0.02) possibly_damaging(0.616) TCGA-D9-A6EC-06 10 69957185 69957185 C T MYPN Missense_Mutation p.P1079S 0.95 deleterious(0.01) benign(0.167) TCGA-D9-A6EC-06 10 70136738 70136738 A C RUFY2 Intron 0.30 TCGA-D9-A6EC-06 10 70450696 70450696 C T TET1 Missense_Mutation p.P1846S 0.96 tolerated(0.07) possibly_damaging(0.653) TCGA-D9-A6EC-06 10 70450697 70450697 C T TET1 Missense_Mutation p.P1846L 0.96 tolerated(0.16) possibly_damaging(0.756) TCGA-D9-A6EC-06 10 70742364 70742364 A T DDX21 Silent p.G716G 0.24 TCGA-D9-A6EC-06 10 7247873 7247873 G A SFMBT2 Missense_Mutation p.P450S 0.59 tolerated(0.23) probably_damaging(0.996) TCGA-D9-A6EC-06 10 72493731 72493731 C T ADAMTS14 Silent p.F436F 0.95 TCGA-D9-A6EC-06 10 72538201 72538201 C T TBATA Intron 0.87 TCGA-D9-A6EC-06 10 7269834 7269834 G A SFMBT2 Missense_Mutation p.P396S 0.48 tolerated(0.42) benign(0.044) TCGA-D9-A6EC-06 10 73055604 73055604 T G UNC5B Missense_Mutation p.L738V 0.29 deleterious(0) benign(0.053) TCGA-D9-A6EC-06 10 73501549 73501549 G A CDH23 Silent p.K1577K 1.00 TCGA-D9-A6EC-06 10 73579311 73579311 G A PSAP Missense_Mutation p.R421C 0.98 deleterious(0.05) possibly_damaging(0.849) TCGA-D9-A6EC-06 10 75301396 75301396 A G USP54 Missense_Mutation p.C225R 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 10 75399719 75399719 G A MYOZ1 Silent p.I19I 0.86 TCGA-D9-A6EC-06 10 75520529 75520529 A G SEC24C Silent p.A303A 0.15 TCGA-D9-A6EC-06 10 75535249 75535249 T G FUT11 Intron 0.41 TCGA-D9-A6EC-06 10 7611638 7611638 C T ITIH5 Silent p.R714R 0.52 TCGA-D9-A6EC-06 10 7622017 7622017 G A ITIH5 Silent p.I373I 0.59 TCGA-D9-A6EC-06 10 76789358 76789358 A C KAT6B Missense_Mutation p.Q1592H 0.94 probably_damaging(0.993) TCGA-D9-A6EC-06 10 79572009 79572009 G A DLG5 Silent p.H1384H 0.87 TCGA-D9-A6EC-06 10 81318690 81318690 G A SFTPA2 Missense_Mutation p.P82S 0.38 tolerated(0.14) benign(0.007) TCGA-D9-A6EC-06 10 82039955 82039955 A G MAT1A Missense_Mutation p.W175R 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 10 82348391 82348391 A G SH2D4B Silent p.K167K 0.18 TCGA-D9-A6EC-06 10 84745484 84745484 C T NRG3 3'Flank 0.92 TCGA-D9-A6EC-06 10 89711912 89711912 A T PTEN Missense_Mutation p.Y177F 0.87 deleterious(0) possibly_damaging(0.844) TCGA-D9-A6EC-06 10 90438434 90438434 A C LIPF Missense_Mutation p.K408T 0.46 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-D9-A6EC-06 10 90582580 90582580 C T ANKRD22 3'UTR 1.00 TCGA-D9-A6EC-06 10 91066123 91066123 A G IFIT2 Missense_Mutation p.E137G 0.28 deleterious(0) possibly_damaging(0.743) TCGA-D9-A6EC-06 10 91066535 91066535 A C IFIT2 Missense_Mutation p.L274F 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-D9-A6EC-06 10 92675309 92675309 G A ANKRD1 Silent p.I280I 1.00 TCGA-D9-A6EC-06 10 93619383 93619383 A G TNKS2 Missense_Mutation p.R1087G 0.14 deleterious(0) benign(0.073) TCGA-D9-A6EC-06 10 95552640 95552640 C T LGI1 Missense_Mutation p.S215F 0.91 tolerated(0.06) benign(0.257) TCGA-D9-A6EC-06 10 95790861 95790861 G A PLCE1 Missense_Mutation p.V20I 0.92 tolerated_low_confidence(0.77) benign(0) TCGA-D9-A6EC-06 10 96058137 96058137 T C PLCE1 Silent p.S1723S 0.94 TCGA-D9-A6EC-06 10 96698425 96698425 G A CYP2C9 5'Flank 0.92 TCGA-D9-A6EC-06 10 98108084 98108084 C T OPALIN Missense_Mutation p.E71K 0.88 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-D9-A6EC-06 10 98760956 98760956 C T SLIT1 Silent p.R1506R 0.93 TCGA-D9-A6EC-06 10 99968042 99968042 C T R3HCC1L Silent p.S57S 0.97 TCGA-D9-A6EC-06 11 100061917 100061917 G A CNTN5 Missense_Mutation p.G547E 1.00 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 11 100221434 100221434 T G CNTN5 Missense_Mutation p.V1011G 0.47 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 100909835 100909835 A C PGR 3'UTR 0.32 TCGA-D9-A6EC-06 11 101347222 101347222 G A TRPC6 Silent p.P518P 0.93 TCGA-D9-A6EC-06 11 101762083 101762083 T G ANGPTL5 Missense_Mutation p.K365T 0.49 tolerated(0.13) benign(0.243) TCGA-D9-A6EC-06 11 101793384 101793384 C T KIAA1377 Silent p.I47I 0.35 TCGA-D9-A6EC-06 11 101857743 101857743 C T KIAA1377 Missense_Mutation p.S1072F 0.88 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 1024082 1024082 C T MUC6 Missense_Mutation p.E1083K 0.38 unknown(0) TCGA-D9-A6EC-06 11 102662101 102662101 C T MMP1 Missense_Mutation p.G387R 0.91 tolerated(0.17) possibly_damaging(0.654) TCGA-D9-A6EC-06 11 102706900 102706900 T G MMP3 Missense_Mutation p.K464T 0.11 tolerated(0.11) benign(0.047) TCGA-D9-A6EC-06 11 102709862 102709862 C T MMP3 Missense_Mutation p.D350N 0.92 deleterious(0) benign(0.162) TCGA-D9-A6EC-06 11 102742683 102742683 C T MMP12 Splice_Site 1.00 TCGA-D9-A6EC-06 11 103049955 103049955 T C DYNC2H1 Missense_Mutation p.F2114L 0.27 benign(0.011) TCGA-D9-A6EC-06 11 103907685 103907685 C T PDGFD Intron 0.35 TCGA-D9-A6EC-06 11 105929598 105929598 A C KBTBD3 Missense_Mutation p.F76C 0.56 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 11 10647797 10647797 C T MRVI1 Missense_Mutation p.G362R 0.29 tolerated_low_confidence(0.39) benign(0.018) TCGA-D9-A6EC-06 11 107686576 107686576 T C SLC35F2 Missense_Mutation p.S76G 0.40 deleterious(0.02) possibly_damaging(0.722) TCGA-D9-A6EC-06 11 10797124 10797124 A C CTR9 Silent p.I1013I 0.28 TCGA-D9-A6EC-06 11 10820784 10820784 A T EIF4G2 Missense_Mutation p.C838S 0.25 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 11 111156716 111156716 C T C11orf53 Silent p.S216S 0.96 TCGA-D9-A6EC-06 11 111365921 111365921 T G BTG4 Missense_Mutation p.K210T 0.13 deleterious(0.04) possibly_damaging(0.791) TCGA-D9-A6EC-06 11 111784382 111784382 C T HSPB2 Silent p.P104P 0.30 TCGA-D9-A6EC-06 11 111845626 111845626 A G DIXDC1 Missense_Mutation p.E192G 0.23 tolerated(0.08) benign(0.003) TCGA-D9-A6EC-06 11 111899363 111899363 A C DLAT Missense_Mutation p.K169T 0.44 tolerated(0.13) benign(0.24) TCGA-D9-A6EC-06 11 111946404 111946404 T C C11orf57 Intron 0.27 TCGA-D9-A6EC-06 11 112046323 112046323 A T BCO2 5'UTR 0.45 TCGA-D9-A6EC-06 11 113661616 113661616 G A ATF4P4 RNA 1.00 TCGA-D9-A6EC-06 11 114182975 114182975 G A NNMT Missense_Mutation p.G191S 1.00 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 11 114182976 114182976 G A NNMT Missense_Mutation p.G191D 1.00 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 11470337 11470337 C T GALNT18 Missense_Mutation p.D128N 0.37 tolerated(0.29) probably_damaging(0.996) TCGA-D9-A6EC-06 11 1154280 1154280 C T MUC5AC Silent p.L42L 0.38 TCGA-D9-A6EC-06 11 116631589 116631589 T G BUD13 Silent p.S372S 0.27 TCGA-D9-A6EC-06 11 116660854 116660854 C T APOA5 Missense_Mutation p.G364E 0.89 tolerated_low_confidence(0.13) benign(0.004) TCGA-D9-A6EC-06 11 116703513 116703513 A C APOC3 Missense_Mutation p.K71N 0.94 deleterious(0.01) probably_damaging(0.971) TCGA-D9-A6EC-06 11 117058379 117058379 A G SIDT2 Missense_Mutation p.S375G 0.14 deleterious(0.01) possibly_damaging(0.801) TCGA-D9-A6EC-06 11 117161328 117161328 A C BACE1 Missense_Mutation p.C380W 0.12 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 117308628 117308628 G A DSCAML1 Missense_Mutation p.A1532V 0.88 deleterious(0.01) probably_damaging(0.933) TCGA-D9-A6EC-06 11 118267125 118267125 G A UBE4A Silent p.E1064E 0.90 TCGA-D9-A6EC-06 11 118771558 118771558 G A BCL9L Missense_Mutation p.P965L 0.94 benign(0.231) TCGA-D9-A6EC-06 11 119229968 119229968 C T USP2 Missense_Mutation p.R345K 0.88 tolerated(0.55) benign(0.131) TCGA-D9-A6EC-06 11 11941997 11941997 C T USP47 Missense_Mutation p.P324S 0.43 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 11 119998107 119998107 C - TRIM29 Frame_Shift_Del p.H358Mfs*26 0.26 TCGA-D9-A6EC-06 11 120189110 120189110 A C POU2F3 3'UTR 0.35 TCGA-D9-A6EC-06 11 120702607 120702607 G A GRIK4 Silent p.K186K 0.94 TCGA-D9-A6EC-06 11 121424683 121424683 C T SORL1 Silent p.S768S 0.91 TCGA-D9-A6EC-06 11 12315611 12315611 C T MICALCL Silent p.S211S 0.39 TCGA-D9-A6EC-06 11 124564247 124564247 A C SPA17 Missense_Mutation p.I121L 0.23 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 11 124745168 124745168 A C ROBO3 Missense_Mutation p.Q745H 0.32 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 11 124766558 124766558 C T ROBO4 Missense_Mutation p.E137K 0.90 tolerated(0.11) benign(0.129) TCGA-D9-A6EC-06 11 124794860 124794860 C T HEPACAM Missense_Mutation p.R64K 0.90 tolerated(1) benign(0) TCGA-D9-A6EC-06 11 125255479 125255479 T G PKNOX2 Missense_Mutation p.F87C 0.22 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 11 1258330 1258330 A T MUC5B Missense_Mutation p.K1078M 0.16 unknown(0) TCGA-D9-A6EC-06 11 1269008 1269008 T G MUC5B Missense_Mutation p.V3633G 0.15 unknown(0) TCGA-D9-A6EC-06 11 1269632 1269632 C T MUC5B Missense_Mutation p.A3841V 0.28 unknown(0) TCGA-D9-A6EC-06 11 128628131 128628131 A G FLI1 Missense_Mutation p.K47R 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-D9-A6EC-06 11 128781540 128781540 A G KCNJ5 Silent p.Q124Q 0.29 TCGA-D9-A6EC-06 11 128844600 128844600 G A ARHGAP32 Missense_Mutation p.S817F 0.35 deleterious(0.02) benign(0.011) TCGA-D9-A6EC-06 11 12958748 12958748 T A TEAD1 Silent p.I420I 0.13 TCGA-D9-A6EC-06 11 129748212 129748212 G A NFRKB Silent p.V526V 0.42 TCGA-D9-A6EC-06 11 130332638 130332638 G A ADAMTS15 Missense_Mutation p.G502E 0.33 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 11 133712402 133712402 G A SPATA19 Nonsense_Mutation p.R139* 0.96 TCGA-D9-A6EC-06 11 133790432 133790432 G A IGSF9B Missense_Mutation p.P1063L 0.96 tolerated_low_confidence(0.62) benign(0.002) TCGA-D9-A6EC-06 11 1579144 1579144 T G DUSP8 Missense_Mutation p.K234T 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-D9-A6EC-06 11 16071378 16071378 G A SOX6 Missense_Mutation p.T453I 0.43 tolerated(0.46) benign(0.398) TCGA-D9-A6EC-06 11 1619224 1619224 C T KRTAP5-2 Missense_Mutation p.G86E 0.42 tolerated_low_confidence(0.33) unknown(0) TCGA-D9-A6EC-06 11 16822535 16822535 C T PLEKHA7 Missense_Mutation p.A799T 0.37 tolerated(0.62) benign(0.003) TCGA-D9-A6EC-06 11 17035712 17035712 G T PLEKHA7 Silent p.R41R 0.61 TCGA-D9-A6EC-06 11 17140199 17140199 A G PIK3C2A Silent p.L1010L 0.27 TCGA-D9-A6EC-06 11 17140837 17140837 G A PIK3C2A Missense_Mutation p.S957F 0.46 deleterious(0.01) possibly_damaging(0.507) TCGA-D9-A6EC-06 11 17190962 17190962 G A PIK3C2A Silent p.F109F 0.43 TCGA-D9-A6EC-06 11 17430032 17430032 C T ABCC8 Silent p.R909R 0.39 TCGA-D9-A6EC-06 11 17452410 17452410 G A ABCC8 Silent p.L590L 0.51 TCGA-D9-A6EC-06 11 17452501 17452501 G A ABCC8 Silent p.F559F 0.61 TCGA-D9-A6EC-06 11 18042554 18042554 C T TPH1 Missense_Mutation p.R440K 0.41 tolerated(0.67) benign(0.001) TCGA-D9-A6EC-06 11 18308239 18308239 G A HPS5 Silent p.S912S 0.14 TCGA-D9-A6EC-06 11 18308240 18308240 G A HPS5 Missense_Mutation p.S912F 0.12 tolerated(0.1) benign(0.067) TCGA-D9-A6EC-06 11 18456398 18456398 A G LDHC Missense_Mutation p.K177R 0.07 tolerated(0.84) benign(0.115) TCGA-D9-A6EC-06 11 18655938 18655938 C T SPTY2D1 5'UTR 0.44 TCGA-D9-A6EC-06 11 18723569 18723569 T A TMEM86A 3'UTR 0.27 TCGA-D9-A6EC-06 11 18738526 18738526 C T IGSF22 Missense_Mutation p.G332E 0.45 tolerated(0.09) probably_damaging(0.932) TCGA-D9-A6EC-06 11 18745686 18745686 T C IGSF22 Missense_Mutation p.K33R 0.17 tolerated_low_confidence(0.11) benign(0.003) TCGA-D9-A6EC-06 11 193129 193129 G A SCGB1C1 Silent p.V10V 0.15 TCGA-D9-A6EC-06 11 205491 205491 G A BET1L Intron 0.61 TCGA-D9-A6EC-06 11 2161476 2161476 G A IGF2 Silent p.L17L 0.47 TCGA-D9-A6EC-06 11 22380958 22380958 G A SLC17A6 Splice_Site p.X153_splice 0.47 TCGA-D9-A6EC-06 11 24936034 24936034 C T LUZP2 Nonsense_Mutation p.Q158* 0.57 TCGA-D9-A6EC-06 11 26463594 26463594 C T ANO3 Missense_Mutation p.S59L 0.35 tolerated_low_confidence(0.12) benign(0.164) TCGA-D9-A6EC-06 11 26463628 26463628 A G ANO3 Missense_Mutation p.I70M 0.18 tolerated_low_confidence(0.22) benign(0.043) TCGA-D9-A6EC-06 11 26587070 26587070 C T MUC15 Silent p.L139L 0.46 TCGA-D9-A6EC-06 11 27016017 27016017 C T FIBIN 5'UTR 0.49 TCGA-D9-A6EC-06 11 27398766 27398766 A C LGR4 Missense_Mutation p.L350V 0.18 deleterious(0.04) probably_damaging(0.946) TCGA-D9-A6EC-06 11 280975 280975 C T NLRP6 Missense_Mutation p.T414I 0.49 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 28119298 28119298 T G KIF18A Missense_Mutation p.K66T 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-D9-A6EC-06 11 2924713 2924713 C T SLC22A18 Silent p.I46I 0.25 TCGA-D9-A6EC-06 11 30255222 30255222 G A FSHB Missense_Mutation p.D89N 0.49 tolerated(0.11) benign(0.042) TCGA-D9-A6EC-06 11 32624387 32624387 C A CCDC73 Missense_Mutation p.E1070D 0.62 tolerated(0.07) benign(0.333) TCGA-D9-A6EC-06 11 32637595 32637595 A C CCDC73 Silent p.T422T 0.22 TCGA-D9-A6EC-06 11 33565814 33565814 C G KIAA1549L Missense_Mutation p.S605W 0.44 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-D9-A6EC-06 11 3381641 3381641 T G ZNF195 Missense_Mutation p.K199N 0.20 deleterious(0.02) probably_damaging(0.95) TCGA-D9-A6EC-06 11 34145400 34145400 C T NAT10 Nonsense_Mutation p.Q336* 0.46 TCGA-D9-A6EC-06 11 3427857 3427857 C T TSSC2 RNA 0.33 TCGA-D9-A6EC-06 11 35016777 35016777 A C PDHX 3'UTR 0.08 TCGA-D9-A6EC-06 11 35457682 35457682 C T PAMR1 Missense_Mutation p.E385K 0.38 tolerated(0.58) possibly_damaging(0.61) TCGA-D9-A6EC-06 11 36472829 36472829 C T PRR5L Missense_Mutation p.S219F 0.48 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 3660959 3660959 T A ART5 Nonsense_Mutation p.R234* 0.18 TCGA-D9-A6EC-06 11 3687431 3687431 T C CHRNA10 Missense_Mutation p.K420R 0.18 tolerated(0.1) benign(0.126) TCGA-D9-A6EC-06 11 3723980 3723980 A C NUP98 Silent p.T1075T 0.23 TCGA-D9-A6EC-06 11 373082 373082 C T B4GALNT4 Silent p.L167L 0.43 TCGA-D9-A6EC-06 11 379484 379484 C T B4GALNT4 Silent p.F757F 0.37 TCGA-D9-A6EC-06 11 40135897 40135897 T A LRRC4C 3'UTR 0.29 TCGA-D9-A6EC-06 11 40137097 40137097 C T LRRC4C Nonsense_Mutation p.W249* 0.37 TCGA-D9-A6EC-06 11 420855 420855 A G ANO9 Missense_Mutation p.V499A 0.18 tolerated(0.2) benign(0.08) TCGA-D9-A6EC-06 11 43284580 43284580 C T HNRNPKP3 RNA 0.38 TCGA-D9-A6EC-06 11 43775598 43775598 A C HSD17B12 Missense_Mutation p.L70F 0.08 deleterious(0) possibly_damaging(0.724) TCGA-D9-A6EC-06 11 4406552 4406552 G A TRIM21 Missense_Mutation p.P464L 0.42 deleterious(0.03) probably_damaging(1) TCGA-D9-A6EC-06 11 44077616 44077616 T C ACCSL Missense_Mutation p.V389A 0.21 deleterious(0.02) benign(0.393) TCGA-D9-A6EC-06 11 45671370 45671370 G A CHST1 Silent p.I368I 0.44 TCGA-D9-A6EC-06 11 45883615 45883615 C T CRY2 Silent p.F240F 0.53 TCGA-D9-A6EC-06 11 45924072 45924072 C T MAPK8IP1 Missense_Mutation p.P252S 0.47 tolerated(0.46) benign(0.054) TCGA-D9-A6EC-06 11 45925618 45925618 C T MAPK8IP1 Silent p.Y524Y 0.42 TCGA-D9-A6EC-06 11 45928453 45928453 C T C11orf94 Missense_Mutation p.E48K 0.40 deleterious(0.01) benign(0.131) TCGA-D9-A6EC-06 11 45959846 45959846 A C PHF21A Missense_Mutation p.D489E 0.15 tolerated(0.51) probably_damaging(0.955) TCGA-D9-A6EC-06 11 4609034 4609034 G A OR52I2 Missense_Mutation p.R331Q 0.41 tolerated(0.13) benign(0.003) TCGA-D9-A6EC-06 11 46331546 46331546 G A CREB3L1 Missense_Mutation p.G175R 0.67 tolerated(0.53) possibly_damaging(0.794) TCGA-D9-A6EC-06 11 46334010 46334010 G A CREB3L1 Silent p.R296R 0.58 TCGA-D9-A6EC-06 11 46400029 46400029 C T DGKZ Silent p.A987A 0.31 TCGA-D9-A6EC-06 11 46407529 46407529 T C CHRM4 Silent p.P193P 0.26 TCGA-D9-A6EC-06 11 4661948 4661948 G A OR51D1 Missense_Mutation p.E310K 0.53 deleterious(0.03) benign(0.041) TCGA-D9-A6EC-06 11 46701818 46701818 C T ARHGAP1 Missense_Mutation p.G279S 0.42 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 11 4674284 4674284 C T OR51E1 Silent p.I176I 0.50 TCGA-D9-A6EC-06 11 4674660 4674660 C T OR51E1 Nonsense_Mutation p.R302* 0.47 TCGA-D9-A6EC-06 11 46880850 46880850 T G LRP4 Missense_Mutation p.N1801T 0.24 tolerated_low_confidence(0.12) benign(0.01) TCGA-D9-A6EC-06 11 46894798 46894798 A G LRP4 Intron 0.10 TCGA-D9-A6EC-06 11 47187861 47187861 C T ARFGAP2 Silent p.G501G 0.51 TCGA-D9-A6EC-06 11 47296655 47296655 T C MADD Missense_Mutation p.C202R 0.15 deleterious(0.04) benign(0.005) TCGA-D9-A6EC-06 11 47345289 47345289 A C MADD Missense_Mutation p.K1482T 0.15 deleterious(0) possibly_damaging(0.57) TCGA-D9-A6EC-06 11 47376853 47376853 C T SPI1 Silent p.K247K 0.62 TCGA-D9-A6EC-06 11 47599198 47599198 A T KBTBD4 Silent p.I134I 0.26 TCGA-D9-A6EC-06 11 48157814 48157814 C T PTPRJ Silent p.V613V 0.37 TCGA-D9-A6EC-06 11 48177534 48177534 T G PTPRJ Intron 0.10 TCGA-D9-A6EC-06 11 4825279 4825279 G A OR52R1 Missense_Mutation p.S111F 0.24 tolerated(0.11) benign(0.444) TCGA-D9-A6EC-06 11 4825537 4825537 C T OR52R1 Missense_Mutation p.S25N 0.42 tolerated(0.54) benign(0.001) TCGA-D9-A6EC-06 11 48266684 48266684 C T OR4X2 Missense_Mutation p.S10F 0.43 tolerated(0.23) benign(0.049) TCGA-D9-A6EC-06 11 48266898 48266898 G A OR4X2 Silent p.R81R 0.18 TCGA-D9-A6EC-06 11 48328187 48328187 A G OR4S1 Missense_Mutation p.K138R 0.72 tolerated(0.19) possibly_damaging(0.791) TCGA-D9-A6EC-06 11 48328686 48328686 G A OR4S1 Silent p.R304R 0.55 TCGA-D9-A6EC-06 11 4843325 4843325 G A OR51F2 Missense_Mutation p.R237Q 0.49 tolerated(0.06) benign(0.061) TCGA-D9-A6EC-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.40 deleterious(0) probably_damaging(0.965) TCGA-D9-A6EC-06 11 4903429 4903429 C T OR51T1 Silent p.F127F 0.43 TCGA-D9-A6EC-06 11 49170215 49170215 C T FOLH1 Missense_Mutation p.G680E 0.47 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 4936029 4936029 G A OR51G2 Missense_Mutation p.P289S 0.38 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 11 4936876 4936876 C T OR51G2 Silent p.L6L 0.46 TCGA-D9-A6EC-06 11 4967671 4967671 G A OR51A4 Silent p.T220T 0.08 TCGA-D9-A6EC-06 11 4968024 4968024 C T OR51A4 Missense_Mutation p.E103K 0.28 deleterious(0.02) possibly_damaging(0.861) TCGA-D9-A6EC-06 11 4976461 4976461 G A OR51A2 Silent p.F161F 0.33 TCGA-D9-A6EC-06 11 5009523 5009523 G A MMP26 Missense_Mutation p.G28R 0.48 tolerated(0.23) benign(0.031) TCGA-D9-A6EC-06 11 5020367 5020367 G C OR51L1 Missense_Mutation p.W52S 0.43 tolerated(0.26) benign(0.074) TCGA-D9-A6EC-06 11 5068652 5068652 G A OR52J3 Silent p.Q299Q 0.53 TCGA-D9-A6EC-06 11 51412084 51412084 G A OR4A5 Silent p.F104F 0.22 TCGA-D9-A6EC-06 11 51515861 51515861 G A OR4C46 Missense_Mutation p.E194K 0.51 deleterious_low_confidence(0) benign(0.001) TCGA-D9-A6EC-06 11 5153391 5153391 G A OR52A5 Missense_Mutation p.S161F 0.51 tolerated(0.82) benign(0.009) TCGA-D9-A6EC-06 11 5269575 5269575 C T HBG1 3'UTR 0.71 TCGA-D9-A6EC-06 11 5269664 5269664 G A HBG1 Silent p.F123F 0.45 TCGA-D9-A6EC-06 11 5274487 5274487 C T HBG2 3'UTR 0.30 TCGA-D9-A6EC-06 11 5274493 5274493 C T HBG2 3'UTR 0.30 TCGA-D9-A6EC-06 11 5289809 5289809 C T HBE1 Missense_Mutation p.V112M 0.36 deleterious(0.03) possibly_damaging(0.804) TCGA-D9-A6EC-06 11 5289810 5289810 C T HBE1 Missense_Mutation p.M111I 0.38 tolerated(0.39) benign(0.017) TCGA-D9-A6EC-06 11 5289822 5289822 C T HBE1 Silent p.L107L 0.58 TCGA-D9-A6EC-06 11 5344746 5344746 C T OR51B2 Missense_Mutation p.R261K 0.49 deleterious(0) probably_damaging(0.955) TCGA-D9-A6EC-06 11 5364033 5364033 G A OR51B5 Missense_Mutation p.S241F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 11 5364190 5364190 C T OR51B5 Missense_Mutation p.D189N 0.51 tolerated(0.05) possibly_damaging(0.533) TCGA-D9-A6EC-06 11 5373255 5373255 C T OR51B6 Missense_Mutation p.S173F 0.35 deleterious(0.01) possibly_damaging(0.678) TCGA-D9-A6EC-06 11 5411369 5411369 C T OR51M1 Silent p.R247R 0.28 TCGA-D9-A6EC-06 11 5443642 5443642 C T OR51Q1 Missense_Mutation p.T71M 0.41 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A6EC-06 11 5443915 5443915 T G OR51Q1 Missense_Mutation p.L162R 0.17 deleterious(0.03) probably_damaging(0.988) TCGA-D9-A6EC-06 11 5462430 5462430 G A OR51I1 Silent p.F105F 0.47 TCGA-D9-A6EC-06 11 5475196 5475196 C T OR51I2 Missense_Mutation p.P160S 0.41 deleterious(0.01) possibly_damaging(0.887) TCGA-D9-A6EC-06 11 5475197 5475197 C T OR51I2 Missense_Mutation p.P160L 0.41 tolerated(0.11) benign(0.036) TCGA-D9-A6EC-06 11 5475368 5475368 C T OR51I2 Missense_Mutation p.S217F 0.46 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 55038462 55038462 C T TRIM48 3'UTR 0.49 TCGA-D9-A6EC-06 11 55135992 55135992 C T OR4A15 Silent p.P211P 0.43 TCGA-D9-A6EC-06 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.34 tolerated_low_confidence(0.06) benign(0.19) TCGA-D9-A6EC-06 11 5528910 5528910 C T UBQLN3 Missense_Mutation p.G627S 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 55419242 55419242 G A OR4S2 Missense_Mutation p.R288K 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 11 55433289 55433289 A G OR4C6 Missense_Mutation p.Y216C 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D9-A6EC-06 11 55433386 55433386 C - OR4C6 Frame_Shift_Del p.F249Lfs*9 0.20 TCGA-D9-A6EC-06 11 55541608 55541608 C T OR5D13 Missense_Mutation p.S232F 0.43 deleterious(0.01) possibly_damaging(0.624) TCGA-D9-A6EC-06 11 55541767 55541767 C T OR5D13 Missense_Mutation p.P285L 0.49 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 55761409 55761409 C T OR5F1 Silent p.G231G 0.57 TCGA-D9-A6EC-06 11 55904457 55904457 T G OR8J3 Silent p.I246I 0.50 TCGA-D9-A6EC-06 11 55927327 55927327 G A OR8K5 Missense_Mutation p.A156V 0.21 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-D9-A6EC-06 11 56000117 56000117 G A OR5T2 Missense_Mutation p.P182L 0.41 tolerated(0.55) benign(0.169) TCGA-D9-A6EC-06 11 5602595 5602595 C T OR52B6 Silent p.I163I 0.53 TCGA-D9-A6EC-06 11 5602813 5602813 C T OR52B6 Missense_Mutation p.S236F 0.46 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 56043921 56043921 C T OR5T1 Silent p.F269F 0.48 TCGA-D9-A6EC-06 11 56113649 56113649 G A OR8K1 Silent p.V45V 0.47 TCGA-D9-A6EC-06 11 56230339 56230339 G A OR5M9 Missense_Mutation p.P180L 0.15 tolerated(0.11) benign(0.072) TCGA-D9-A6EC-06 11 56258184 56258184 G A OR5M8 Silent p.F221F 0.41 TCGA-D9-A6EC-06 11 56310241 56310241 G A OR5M11 Silent p.L165L 0.43 TCGA-D9-A6EC-06 11 56344694 56344694 G A OR5M10 Silent p.F168F 0.47 TCGA-D9-A6EC-06 11 56380743 56380743 G A OR5M1 Missense_Mutation p.P79L 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 11 56409848 56409848 A T OR5AP2 Missense_Mutation p.L23H 0.20 deleterious(0) probably_damaging(0.962) TCGA-D9-A6EC-06 11 56409849 56409849 G A OR5AP2 Missense_Mutation p.L23F 0.21 tolerated(0.97) benign(0.039) TCGA-D9-A6EC-06 11 56511019 56511019 G A OR9G4 Missense_Mutation p.S90F 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 11 57003530 57003530 G A APLNR Missense_Mutation p.R317C 0.42 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 57068427 57068427 G A TNKS1BP1 Missense_Mutation p.S1687L 0.38 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 11 57379249 57379249 G A SERPING1 Silent p.L363L 0.41 TCGA-D9-A6EC-06 11 57428449 57428449 T C CLP1 Silent p.F273F 0.07 TCGA-D9-A6EC-06 11 57505101 57505101 T A TMX2 Missense_Mutation p.F71I 0.26 deleterious(0) probably_damaging(0.937) TCGA-D9-A6EC-06 11 57575930 57575930 T C CTNND1 Silent p.T720T 0.12 TCGA-D9-A6EC-06 11 5758510 5758510 C T OR56B1 Missense_Mutation p.T255I 0.40 tolerated(1) benign(0.002) TCGA-D9-A6EC-06 11 57798797 57798797 G A OR6Q1 Missense_Mutation p.D125N 0.60 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 11 57971429 57971429 G A OR1S2 Silent p.F75F 0.39 TCGA-D9-A6EC-06 11 57996162 57996162 C T OR10Q1 Silent p.P62P 0.45 TCGA-D9-A6EC-06 11 5799668 5799668 G A OR52N5 Missense_Mutation p.P66L 0.94 deleterious(0) probably_damaging(0.935) TCGA-D9-A6EC-06 11 5799812 5799812 G A OR52N5 Missense_Mutation p.P18L 0.91 tolerated(0.06) benign(0.001) TCGA-D9-A6EC-06 11 58170720 58170720 T C OR5B3 Missense_Mutation p.N55D 0.53 deleterious_low_confidence(0) benign(0.028) TCGA-D9-A6EC-06 11 58190355 58190355 G A OR5B2 Missense_Mutation p.P127L 0.45 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-D9-A6EC-06 11 58385223 58385223 T G ZFP91 3'UTR 0.25 TCGA-D9-A6EC-06 11 58723486 58723486 C T GLYATL1 Silent p.L330L 0.52 TCGA-D9-A6EC-06 11 5905698 5905698 A G OR52E4 Missense_Mutation p.Q59R 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-D9-A6EC-06 11 59132071 59132071 T G OR5AN1 Missense_Mutation p.I47S 0.28 deleterious(0) benign(0.126) TCGA-D9-A6EC-06 11 59132525 59132525 C T OR5AN1 Silent p.V198V 0.48 TCGA-D9-A6EC-06 11 59211496 59211496 C T OR5A1 Silent p.I285I 0.41 TCGA-D9-A6EC-06 11 59604745 59604745 T G GIF Missense_Mutation p.K258T 0.22 tolerated(0.14) benign(0.255) TCGA-D9-A6EC-06 11 59807962 59807962 T G OOSP2 Silent p.A10A 0.16 TCGA-D9-A6EC-06 11 59837684 59837684 C T MS4A3 Missense_Mutation p.S208F 0.30 tolerated(0.05) benign(0.09) TCGA-D9-A6EC-06 11 6008039 6008039 C T OR52L1 Missense_Mutation p.S41N 0.26 tolerated(0.07) benign(0.111) TCGA-D9-A6EC-06 11 60540937 60540937 G A MS4A15 Missense_Mutation p.D160N 0.50 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 11 60702140 60702140 C T TMEM132A Silent p.L581L 0.18 TCGA-D9-A6EC-06 11 607766 607766 C T PHRF1 Silent p.V769V 0.48 TCGA-D9-A6EC-06 11 60886412 60886412 G A CD5 Silent p.T142T 0.35 TCGA-D9-A6EC-06 11 60887039 60887039 T C CD5 Missense_Mutation p.L266P 0.24 deleterious(0) possibly_damaging(0.702) TCGA-D9-A6EC-06 11 611069 611069 A G PHRF1 Missense_Mutation p.K1597R 0.20 deleterious(0.04) possibly_damaging(0.801) TCGA-D9-A6EC-06 11 61135396 61135396 A C TMEM138 Missense_Mutation p.N101T 0.06 tolerated(0.43) benign(0.036) TCGA-D9-A6EC-06 11 61254664 61254664 C T PPP1R32 Missense_Mutation p.P332L 0.47 tolerated(0.12) benign(0.009) TCGA-D9-A6EC-06 11 61291302 61291302 A C SYT7 Missense_Mutation p.S377A 0.18 deleterious(0) probably_damaging(0.912) TCGA-D9-A6EC-06 11 61646236 61646236 G A FADS3 Silent p.F202F 0.23 TCGA-D9-A6EC-06 11 617549 617549 C T CDHR5 Silent p.K780K 0.32 TCGA-D9-A6EC-06 11 61897961 61897961 A C INCENP Missense_Mutation p.K321T 0.14 deleterious(0) unknown(0) TCGA-D9-A6EC-06 11 62298217 62298217 C T AHNAK Missense_Mutation p.M1224I 0.23 benign(0.009) TCGA-D9-A6EC-06 11 62334927 62334927 T C EEF1G Missense_Mutation p.Q199R 0.20 deleterious(0.03) benign(0.091) TCGA-D9-A6EC-06 11 62363302 62363302 A C MTA2 Silent p.A392A 0.20 TCGA-D9-A6EC-06 11 62375207 62375207 G A EML3 Silent p.F431F 0.38 TCGA-D9-A6EC-06 11 62434515 62434515 T A METTL12 Missense_Mutation p.S239T 0.08 tolerated(0.12) benign(0.039) TCGA-D9-A6EC-06 11 62748520 62748520 G A SLC22A6 Missense_Mutation p.S325L 0.42 deleterious(0) possibly_damaging(0.732) TCGA-D9-A6EC-06 11 62768248 62768248 A C SLC22A8 Silent p.S127S 0.51 TCGA-D9-A6EC-06 11 62995963 62995963 C T SLC22A25 Missense_Mutation p.G159E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 62996904 62996904 C T SLC22A25 Missense_Mutation p.R74K 0.47 tolerated(0.09) benign(0.05) TCGA-D9-A6EC-06 11 63072302 63072302 C T SLC22A10 Silent p.F513F 0.48 TCGA-D9-A6EC-06 11 63662682 63662682 C T MARK2 Missense_Mutation p.R36W 0.42 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 63682182 63682182 A G RCOR2 Missense_Mutation p.L142P 0.05 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 64064658 64064658 G A KCNK4 Silent p.G127G 0.51 TCGA-D9-A6EC-06 11 6422635 6422635 G A APBB1 Missense_Mutation p.R508C 0.41 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 11 64331794 64331794 C T SLC22A11 Missense_Mutation p.S279F 0.36 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 11 64359322 64359322 C T SLC22A12 Silent p.L98L 0.47 TCGA-D9-A6EC-06 11 64374617 64374617 C T NRXN2 3'UTR 0.41 TCGA-D9-A6EC-06 11 64375247 64375247 G A NRXN2 Silent p.V1520V 0.35 TCGA-D9-A6EC-06 11 64428576 64428576 A C NRXN2 Missense_Mutation p.L612V 0.20 tolerated(0.5) benign(0.02) TCGA-D9-A6EC-06 11 64559447 64559447 A G MAP4K2 Missense_Mutation p.C676R 0.21 tolerated(0.54) benign(0.002) TCGA-D9-A6EC-06 11 64602433 64602433 A C CDC42BPG Missense_Mutation p.V688G 0.18 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 11 64677240 64677240 T C ATG2A Missense_Mutation p.S674G 0.07 deleterious(0.02) benign(0.044) TCGA-D9-A6EC-06 11 64680846 64680846 C T ATG2A Silent p.R206R 0.24 TCGA-D9-A6EC-06 11 6501237 6501237 C T ARFIP2 Missense_Mutation p.G54D 0.46 deleterious(0.05) probably_damaging(1) TCGA-D9-A6EC-06 11 65178737 65178737 C T FRMD8 Missense_Mutation p.P434L 0.24 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-D9-A6EC-06 11 6530174 6530174 T G DNHD1 Missense_Mutation p.F329V 0.18 probably_damaging(0.999) TCGA-D9-A6EC-06 11 65306022 65306022 C T SCYL1 Silent p.A804A 0.40 TCGA-D9-A6EC-06 11 65308743 65308743 T C LTBP3 Missense_Mutation p.K916R 0.08 tolerated(0.11) benign(0.225) TCGA-D9-A6EC-06 11 65347680 65347680 T C EHBP1L1 Silent p.A147A 0.10 TCGA-D9-A6EC-06 11 65348784 65348784 A C EHBP1L1 Missense_Mutation p.E269A 0.15 tolerated(0.37) benign(0.001) TCGA-D9-A6EC-06 11 65631368 65631368 A G MUS81 Missense_Mutation p.Q352R 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-D9-A6EC-06 11 65651939 65651939 C T FIBP Missense_Mutation p.D317N 0.43 tolerated(0.46) possibly_damaging(0.51) TCGA-D9-A6EC-06 11 65780329 65780329 G A CST6 Missense_Mutation p.M91I 0.47 tolerated(0.14) benign(0.003) TCGA-D9-A6EC-06 11 65826343 65826343 C T SF3B2 Nonsense_Mutation p.Q337* 0.37 TCGA-D9-A6EC-06 11 65828153 65828153 A G SF3B2 Missense_Mutation p.K577R 0.13 tolerated(0.35) possibly_damaging(0.605) TCGA-D9-A6EC-06 11 66192362 66192362 C T NPAS4 Silent p.P667P 0.48 TCGA-D9-A6EC-06 11 66249785 66249785 C T DPP3 Silent p.S38S 0.40 TCGA-D9-A6EC-06 11 66291292 66291292 T A BBS1 Missense_Mutation p.L350Q 0.14 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 11 6629302 6629302 A T ILK Missense_Mutation p.H39L 0.50 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 6629303 6629303 C T ILK Silent p.H39H 0.50 TCGA-D9-A6EC-06 11 66299191 66299191 A C BBS1 Missense_Mutation p.K558T 0.22 tolerated(0.16) benign(0.077) TCGA-D9-A6EC-06 11 6632100 6632100 A C TAF10 3'UTR 0.10 TCGA-D9-A6EC-06 11 66330737 66330737 G A CTSF 3'Flank 0.56 TCGA-D9-A6EC-06 11 66454998 66454998 G A SPTBN2 Silent p.L2208L 0.45 TCGA-D9-A6EC-06 11 66481867 66481867 G A SPTBN2 Silent p.I165I 0.43 TCGA-D9-A6EC-06 11 67209019 67209019 G A CORO1B Intron 0.31 TCGA-D9-A6EC-06 11 67210079 67210079 G A CORO1B Silent p.V7V 0.35 TCGA-D9-A6EC-06 11 67223157 67223157 C T CABP4 Missense_Mutation p.P88L 0.49 tolerated(0.06) benign(0.002) TCGA-D9-A6EC-06 11 67267283 67267283 T G PITPNM1 Missense_Mutation p.E361A 0.19 tolerated(0.07) benign(0.006) TCGA-D9-A6EC-06 11 67395656 67395656 A C NUDT8 Missense_Mutation p.F158V 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-D9-A6EC-06 11 67400568 67400568 G A TBX10 Missense_Mutation p.L186F 0.43 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 11 67770548 67770548 C T UNC93B1 Silent p.L112L 0.33 TCGA-D9-A6EC-06 11 67816380 67816380 T G TCIRG1 Missense_Mutation p.L530R 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 67817706 67817706 A G TCIRG1 Missense_Mutation p.S741G 0.13 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 11 68029329 68029329 G A C11orf24 Silent p.P378P 0.48 TCGA-D9-A6EC-06 11 6807058 6807058 T G OR2AG1 Missense_Mutation p.S264A 0.40 tolerated(0.21) benign(0.02) TCGA-D9-A6EC-06 11 68529011 68529011 G T CPT1A Missense_Mutation p.L674I 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-D9-A6EC-06 11 68549423 68549423 G A CPT1A Missense_Mutation p.P390S 0.48 tolerated(0.14) benign(0.051) TCGA-D9-A6EC-06 11 68580005 68580005 T G CPT1A Missense_Mutation p.S61R 0.16 deleterious(0.01) possibly_damaging(0.836) TCGA-D9-A6EC-06 11 68703870 68703870 A G IGHMBP2 Missense_Mutation p.E641G 0.19 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 11 68704331 68704331 C T IGHMBP2 Missense_Mutation p.P795S 0.50 tolerated(0.58) benign(0) TCGA-D9-A6EC-06 11 68704353 68704353 C T IGHMBP2 Missense_Mutation p.P802L 0.48 tolerated(0.26) benign(0.001) TCGA-D9-A6EC-06 11 6891406 6891406 C T OR10A2 Missense_Mutation p.P141S 0.53 tolerated(0.05) possibly_damaging(0.764) TCGA-D9-A6EC-06 11 6943099 6943099 G A OR2D3 Missense_Mutation p.M289I 0.42 tolerated(0.3) benign(0.001) TCGA-D9-A6EC-06 11 6976948 6976948 C T ZNF215 Missense_Mutation p.S247L 0.18 tolerated(0.12) benign(0.122) TCGA-D9-A6EC-06 11 6977644 6977644 G A ZNF215 Missense_Mutation p.R479Q 0.37 tolerated(0.11) probably_damaging(0.997) TCGA-D9-A6EC-06 11 70013386 70013386 A G ANO1 Missense_Mutation p.Q697R 0.21 tolerated(1) benign(0) TCGA-D9-A6EC-06 11 70189925 70189925 A G PPFIA1 Missense_Mutation p.S620G 0.18 tolerated(0.18) benign(0.001) TCGA-D9-A6EC-06 11 70336455 70336455 G C SHANK2 Missense_Mutation p.P827R 0.40 deleterious(0.01) benign(0.183) TCGA-D9-A6EC-06 11 70338449 70338449 T C SHANK2 Silent p.S811S 0.10 TCGA-D9-A6EC-06 11 7059834 7059834 C T NLRP14 Missense_Mutation p.S6L 0.25 tolerated(0.08) benign(0.026) TCGA-D9-A6EC-06 11 7083621 7083621 G A NLRP14 Silent p.L954L 0.52 TCGA-D9-A6EC-06 11 7110446 7110446 G A RBMXL2 Missense_Mutation p.G32D 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 7111115 7111115 G A RBMXL2 Missense_Mutation p.R255K 0.62 tolerated(0.1) benign(0.067) TCGA-D9-A6EC-06 11 71259912 71259912 G A KRTAP5-9 Missense_Mutation p.G70E 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-D9-A6EC-06 11 71260290 71260290 C T KRTAP5-9 3'UTR 0.40 TCGA-D9-A6EC-06 11 71260350 71260350 G A KRTAP5-9 3'UTR 0.45 TCGA-D9-A6EC-06 11 71727288 71727288 C T NUMA1 Missense_Mutation p.E421K 0.52 possibly_damaging(0.646) TCGA-D9-A6EC-06 11 71941504 71941504 A G INPPL1 Missense_Mutation p.S397G 0.21 deleterious(0.03) possibly_damaging(0.831) TCGA-D9-A6EC-06 11 71946398 71946398 C T INPPL1 Silent p.T854T 0.37 TCGA-D9-A6EC-06 11 72288508 72288508 G A PDE2A Silent p.L916L 0.19 TCGA-D9-A6EC-06 11 72416853 72416853 G A ARAP1 Silent p.I602I 0.51 TCGA-D9-A6EC-06 11 72538327 72538327 C T ATG16L2 Silent p.F487F 0.46 TCGA-D9-A6EC-06 11 73076780 73076780 T C ARHGEF17 Missense_Mutation p.L1928P 0.08 deleterious(0) possibly_damaging(0.843) TCGA-D9-A6EC-06 11 7334911 7334911 G A SYT9 Silent p.K261K 0.49 TCGA-D9-A6EC-06 11 73676054 73676054 A C DNAJB13 Missense_Mutation p.T156P 0.46 deleterious(0) possibly_damaging(0.558) TCGA-D9-A6EC-06 11 73676056 73676056 C A DNAJB13 Silent p.T156T 0.43 TCGA-D9-A6EC-06 11 73714956 73714956 T G UCP3 Missense_Mutation p.N247T 0.19 deleterious(0.01) possibly_damaging(0.844) TCGA-D9-A6EC-06 11 73715030 73715030 G A UCP3 Silent p.V222V 0.32 TCGA-D9-A6EC-06 11 73789661 73789661 A G C2CD3 Missense_Mutation p.S1368P 0.48 deleterious(0.01) possibly_damaging(0.84) TCGA-D9-A6EC-06 11 74340365 74340365 G A POLD3 Missense_Mutation p.E335K 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 11 74413908 74413908 G A CHRDL2 Silent p.L351L 0.50 TCGA-D9-A6EC-06 11 74800546 74800546 G A OR2AT4 Silent p.L71L 0.35 TCGA-D9-A6EC-06 11 75146425 75146425 G C GDPD5 3'UTR 0.31 TCGA-D9-A6EC-06 11 75282899 75282899 A C SERPINH1 Missense_Mutation p.K343T 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-D9-A6EC-06 11 76063826 76063826 G A PRKRIR Missense_Mutation p.S123F 0.52 tolerated(0.31) benign(0.002) TCGA-D9-A6EC-06 11 76751650 76751650 A G B3GNT6 Missense_Mutation p.E352G 0.23 deleterious(0.02) benign(0.164) TCGA-D9-A6EC-06 11 76877191 76877191 C T MYO7A Nonsense_Mutation p.Q594* 0.48 TCGA-D9-A6EC-06 11 76915228 76915228 G A MYO7A Missense_Mutation p.E1812K 0.50 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 11 76982380 76982380 A G GDPD4 Missense_Mutation p.F89S 0.13 deleterious(0.03) possibly_damaging(0.726) TCGA-D9-A6EC-06 11 77412116 77412116 C T RSF1 Missense_Mutation p.E720K 0.54 tolerated_low_confidence(0.07) benign(0.146) TCGA-D9-A6EC-06 11 77775159 77775159 G A THRSP Missense_Mutation p.E78K 0.45 tolerated(0.11) benign(0.067) TCGA-D9-A6EC-06 11 7817659 7817659 C T OR5P2 Silent p.V277V 0.35 TCGA-D9-A6EC-06 11 78204194 78204194 T G NARS2 Missense_Mutation p.N246T 0.25 deleterious(0) possibly_damaging(0.833) TCGA-D9-A6EC-06 11 7847259 7847259 C T OR5P3 Silent p.R87R 0.42 TCGA-D9-A6EC-06 11 7960542 7960542 G A OR10A3 Missense_Mutation p.H176Y 0.16 deleterious(0.04) benign(0.327) TCGA-D9-A6EC-06 11 800138 800138 T G PIDD Missense_Mutation p.K756T 0.21 deleterious(0.01) possibly_damaging(0.653) TCGA-D9-A6EC-06 11 8161629 8161629 G A RIC3 Missense_Mutation p.A79V 0.47 tolerated(0.13) possibly_damaging(0.492) TCGA-D9-A6EC-06 11 82924410 82924410 C A ANKRD42 Intron 0.52 TCGA-D9-A6EC-06 11 82924411 82924411 C T ANKRD42 Intron 0.48 TCGA-D9-A6EC-06 11 83180398 83180398 C T DLG2 Missense_Mutation p.R822Q 0.24 deleterious(0) probably_damaging(0.928) TCGA-D9-A6EC-06 11 8457067 8457067 C T STK33 Missense_Mutation p.E374K 0.53 deleterious(0) probably_damaging(0.934) TCGA-D9-A6EC-06 11 8486352 8486352 T C STK33 Silent p.G119G 0.14 TCGA-D9-A6EC-06 11 84996295 84996295 G A DLG2 Missense_Mutation p.P52L 0.86 tolerated_low_confidence(0.17) benign(0) TCGA-D9-A6EC-06 11 85406290 85406290 A C SYTL2 Missense_Mutation p.I1256S 0.12 deleterious(0) possibly_damaging(0.743) TCGA-D9-A6EC-06 11 85456745 85456745 G A SYTL2 Silent p.F108F 0.91 TCGA-D9-A6EC-06 11 85630540 85630540 A C CCDC83 Missense_Mutation p.K441T 0.43 deleterious(0) probably_damaging(0.956) TCGA-D9-A6EC-06 11 85725926 85725926 A C PICALM Missense_Mutation p.L178R 0.50 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 11 85989573 85989573 T C EED 3'UTR 0.59 TCGA-D9-A6EC-06 11 8717087 8717087 T C ST5 Missense_Mutation p.E1101G 0.17 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 11 88924451 88924451 C T TYR Missense_Mutation p.P301S 0.92 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 11 8959238 8959238 C T ASCL3 Silent p.K157K 0.23 TCGA-D9-A6EC-06 11 89902106 89902106 A C NAALAD2 Missense_Mutation p.K430Q 0.38 deleterious(0) possibly_damaging(0.511) TCGA-D9-A6EC-06 11 89911136 89911136 G A NAALAD2 Missense_Mutation p.R570Q 0.80 tolerated(0.34) probably_damaging(1) TCGA-D9-A6EC-06 11 92087701 92087701 A T FAT3 Missense_Mutation p.N808I 0.89 benign(0.004) TCGA-D9-A6EC-06 11 9225729 9225729 T C DENND5A Missense_Mutation p.S143G 0.24 deleterious(0.02) possibly_damaging(0.717) TCGA-D9-A6EC-06 11 9225745 9225745 A C DENND5A Missense_Mutation p.F137L 0.14 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 11 9304967 9304967 A C TMEM41B 3'UTR 0.21 TCGA-D9-A6EC-06 11 9305129 9305129 G A TMEM41B Missense_Mutation p.P240S 0.56 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 11 93535013 93535013 C T MED17 Silent p.T447T 0.83 TCGA-D9-A6EC-06 11 93808500 93808500 A T HEPHL1 Silent p.V555V 0.92 TCGA-D9-A6EC-06 11 9446703 9446703 A G IPO7 Missense_Mutation p.K410R 0.11 tolerated(0.12) probably_damaging(0.943) TCGA-D9-A6EC-06 11 94602423 94602423 C T AMOTL1 Missense_Mutation p.P850L 0.94 tolerated(0.2) benign(0.343) TCGA-D9-A6EC-06 11 94731937 94731937 C T KDM4D Silent p.L467L 0.95 TCGA-D9-A6EC-06 11 94759345 94759345 T A KDM4E Silent p.T208T 0.43 TCGA-D9-A6EC-06 11 95580899 95580899 A C MTMR2 Silent p.T386T 0.08 TCGA-D9-A6EC-06 11 96104240 96104240 G A CCDC82 Silent p.N382N 0.26 TCGA-D9-A6EC-06 11 99690432 99690432 G A CNTN5 Silent p.G71G 0.50 TCGA-D9-A6EC-06 12 100491164 100491164 G A UHRF1BP1L Silent p.I216I 1.00 TCGA-D9-A6EC-06 12 100691887 100691887 C T SCYL2 Silent p.S138S 1.00 TCGA-D9-A6EC-06 12 100691888 100691888 C T SCYL2 Missense_Mutation p.P139S 1.00 tolerated(0.16) benign(0.01) TCGA-D9-A6EC-06 12 101436178 101436178 C T ANO4 Silent p.F327F 0.96 TCGA-D9-A6EC-06 12 101514367 101514367 C T ANO4 Silent p.V845V 0.88 TCGA-D9-A6EC-06 12 101680202 101680202 T A UTP20 Missense_Mutation p.L144M 0.42 deleterious(0.02) probably_damaging(0.98) TCGA-D9-A6EC-06 12 101711405 101711405 C T UTP20 Missense_Mutation p.S901F 0.92 deleterious(0.05) benign(0.048) TCGA-D9-A6EC-06 12 101767213 101767213 G A UTP20 Missense_Mutation p.E2305K 0.91 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 12 102067302 102067302 T G MYBPC1 Missense_Mutation p.F897C 0.42 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 10279948 10279948 C T CLEC7A Intron 0.35 TCGA-D9-A6EC-06 12 10332200 10332200 G A TMEM52B Missense_Mutation p.R4Q 0.42 tolerated_low_confidence(0.38) benign(0.001) TCGA-D9-A6EC-06 12 104084314 104084314 G A STAB2 Missense_Mutation p.G1099R 0.87 deleterious(0.01) probably_damaging(0.963) TCGA-D9-A6EC-06 12 104155080 104155080 G A STAB2 Silent p.T2417T 0.84 TCGA-D9-A6EC-06 12 105280195 105280195 G A SLC41A2 Silent p.I301I 0.95 TCGA-D9-A6EC-06 12 10532407 10532407 G A KLRK1 Intron 0.33 TCGA-D9-A6EC-06 12 10539595 10539595 G A KLRK1 Missense_Mutation p.H19Y 0.39 tolerated(0.18) benign(0.004) TCGA-D9-A6EC-06 12 105520986 105520986 A C KIAA1033 Missense_Mutation p.K373T 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-D9-A6EC-06 12 105622934 105622934 A C APPL2 Missense_Mutation p.L41R 0.39 tolerated(0.17) probably_damaging(0.962) TCGA-D9-A6EC-06 12 108011122 108011122 C T BTBD11 Missense_Mutation p.P714S 0.85 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 10954454 10954454 G A TAS2R7 Missense_Mutation p.S239F 0.40 tolerated(0.13) probably_damaging(0.937) TCGA-D9-A6EC-06 12 10954750 10954750 G A TAS2R7 Silent p.L140L 0.39 TCGA-D9-A6EC-06 12 109547664 109547664 C T UNG Missense_Mutation p.P278S 0.91 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 10954778 10954778 G A TAS2R7 Missense_Mutation p.S131F 0.37 tolerated(0.7) benign(0.001) TCGA-D9-A6EC-06 12 10958974 10958974 G A TAS2R8 Silent p.F202F 0.52 TCGA-D9-A6EC-06 12 10959215 10959215 A G TAS2R8 Missense_Mutation p.L122P 0.08 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 12 10962528 10962528 G A TAS2R9 Silent p.I49I 0.35 TCGA-D9-A6EC-06 12 110778759 110778759 T G ATP2A2 Missense_Mutation p.I686S 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 110968444 110968444 T G RAD9B Intron 0.12 TCGA-D9-A6EC-06 12 111746305 111746305 G A CUX2 Silent p.E411E 1.00 TCGA-D9-A6EC-06 12 111749956 111749956 C T CUX2 Silent p.I651I 1.00 TCGA-D9-A6EC-06 12 112174777 112174777 C T ACAD10 Silent p.I592I 0.91 TCGA-D9-A6EC-06 12 112512487 112512487 T G NAA25 Missense_Mutation p.E286D 0.50 tolerated(0.41) benign(0.004) TCGA-D9-A6EC-06 12 113440866 113440866 A C OAS2 Missense_Mutation p.N380H 0.44 deleterious(0.02) probably_damaging(0.976) TCGA-D9-A6EC-06 12 113629584 113629584 G A RITA1 Missense_Mutation p.G258S 0.94 tolerated(0.22) benign(0.317) TCGA-D9-A6EC-06 12 11461400 11461400 A C PRB4 Missense_Mutation p.S173A 0.06 deleterious_low_confidence(0.04) unknown(0) TCGA-D9-A6EC-06 12 11461453 11461453 G A PRB4 Missense_Mutation p.P155L 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-D9-A6EC-06 12 11506726 11506726 C T PRB1 Missense_Mutation p.G104E 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-D9-A6EC-06 12 11545958 11545958 C T PRB2 Missense_Mutation p.G352R 0.36 tolerated(0.21) unknown(0) TCGA-D9-A6EC-06 12 11546095 11546095 C T PRB2 Missense_Mutation p.G306E 0.34 deleterious(0.01) unknown(0) TCGA-D9-A6EC-06 12 117448247 117448247 G A FBXW8 Missense_Mutation p.M453I 0.41 tolerated(0.29) benign(0.063) TCGA-D9-A6EC-06 12 117768311 117768311 C T NOS1 Silent p.A188A 0.92 TCGA-D9-A6EC-06 12 117907600 117907600 C T KSR2 Missense_Mutation p.D905N 1.00 deleterious(0) possibly_damaging(0.604) TCGA-D9-A6EC-06 12 118471997 118471997 T C WSB2 3'UTR 0.87 TCGA-D9-A6EC-06 12 119583407 119583407 G A SRRM4 Silent p.G331G 0.73 TCGA-D9-A6EC-06 12 120156575 120156575 T G CIT Missense_Mutation p.K1311T 0.30 tolerated(0.15) possibly_damaging(0.584) TCGA-D9-A6EC-06 12 120166326 120166326 T G CIT Missense_Mutation p.K1191T 0.45 tolerated(0.14) possibly_damaging(0.873) TCGA-D9-A6EC-06 12 120741623 120741623 C T SIRT4 Missense_Mutation p.R87C 0.96 deleterious(0.01) possibly_damaging(0.893) TCGA-D9-A6EC-06 12 121093970 121093970 C T CABP1 Intron 0.94 TCGA-D9-A6EC-06 12 121416810 121416810 A G HNF1A Missense_Mutation p.D80G 0.45 deleterious(0) benign(0.367) TCGA-D9-A6EC-06 12 122292607 122292607 A G HPD Splice_Site p.X138_splice 0.31 TCGA-D9-A6EC-06 12 122395121 122395121 A C WDR66 Missense_Mutation p.E559D 0.38 tolerated(0.2) benign(0.005) TCGA-D9-A6EC-06 12 122689170 122689170 T G B3GNT4 Missense_Mutation p.L2R 0.39 deleterious_low_confidence(0.01) benign(0.032) TCGA-D9-A6EC-06 12 122748207 122748207 G A VPS33A Missense_Mutation p.R70C 0.92 tolerated(0.17) benign(0.035) TCGA-D9-A6EC-06 12 12291442 12291442 A G LRP6 Missense_Mutation p.S1142P 0.22 tolerated(0.07) benign(0.233) TCGA-D9-A6EC-06 12 123078867 123078867 A G KNTC1 Silent p.K1430K 0.22 TCGA-D9-A6EC-06 12 123307950 123307950 C T CCDC62 Missense_Mutation p.T680I 0.79 deleterious_low_confidence(0) benign(0.323) TCGA-D9-A6EC-06 12 123307951 123307951 C T CCDC62 Silent p.T680T 0.79 TCGA-D9-A6EC-06 12 123472393 123472393 T C PITPNM2 Missense_Mutation p.Q1018R 0.12 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 12 124252199 124252199 T C DNAH10 Silent p.T26T 0.17 TCGA-D9-A6EC-06 12 124317792 124317792 T G DNAH10 Silent p.T1441T 0.20 TCGA-D9-A6EC-06 12 124326047 124326047 T C DNAH10 Missense_Mutation p.L1654P 0.88 possibly_damaging(0.722) TCGA-D9-A6EC-06 12 124403377 124403377 C T DNAH10 Missense_Mutation p.A3678V 0.15 benign(0.049) TCGA-D9-A6EC-06 12 12482995 12482995 T C MANSC1 Missense_Mutation p.D421G 0.44 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 12 12483666 12483666 A T MANSC1 Silent p.A197A 0.23 TCGA-D9-A6EC-06 12 125441354 125441354 G A DHX37 Missense_Mutation p.P779L 0.90 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 12 126139061 126139061 G A TMEM132B Missense_Mutation p.M1014I 0.95 tolerated(0.37) benign(0) TCGA-D9-A6EC-06 12 129299362 129299362 G A SLC15A4 Missense_Mutation p.S267F 0.95 tolerated(0.06) benign(0.159) TCGA-D9-A6EC-06 12 12966294 12966294 C T DDX47 5'UTR 0.27 TCGA-D9-A6EC-06 12 130856036 130856036 C T PIWIL1 Missense_Mutation p.R827C 0.88 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 130883684 130883684 G A RIMBP2 Missense_Mutation p.P1052L 0.96 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D9-A6EC-06 12 13220139 13220139 C T KIAA1467 Nonsense_Mutation p.R351* 0.44 TCGA-D9-A6EC-06 12 13229031 13229031 C T KIAA1467 Silent p.I532I 0.46 TCGA-D9-A6EC-06 12 132334421 132334421 C T MMP17 Missense_Mutation p.P427S 0.39 deleterious(0) probably_damaging(0.934) TCGA-D9-A6EC-06 12 132466780 132466780 C T EP400 Silent p.P562P 0.96 TCGA-D9-A6EC-06 12 132546749 132546749 C T EP400 Missense_Mutation p.S2660F 0.85 possibly_damaging(0.683) TCGA-D9-A6EC-06 12 133357428 133357428 A C GOLGA3 Missense_Mutation p.S1180A 0.46 tolerated(1) benign(0.011) TCGA-D9-A6EC-06 12 13529248 13529248 G A C12orf36 Missense_Mutation p.S31L 0.32 possibly_damaging(0.504) TCGA-D9-A6EC-06 12 15095521 15095521 C T ARHGDIB Missense_Mutation p.D181N 0.43 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 12 15274037 15274037 A C RERG Missense_Mutation p.F26L 0.31 deleterious(0) possibly_damaging(0.506) TCGA-D9-A6EC-06 12 18466971 18466971 G A PIK3C2G Silent p.R370R 0.33 TCGA-D9-A6EC-06 12 18499702 18499702 C T PIK3C2G Silent p.P519P 0.55 TCGA-D9-A6EC-06 12 18691178 18691178 G A PIK3C2G Missense_Mutation p.E1097K 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 18793422 18793422 C T PIK3C2G Silent p.P1373P 0.31 TCGA-D9-A6EC-06 12 18876302 18876302 C T PLCZ1 Missense_Mutation p.E104K 0.67 tolerated(0.2) benign(0.05) TCGA-D9-A6EC-06 12 1943722 1943722 C T LRTM2 Silent p.V316V 0.99 TCGA-D9-A6EC-06 12 1965212 1965212 G A CACNA2D4 Silent p.I706I 0.44 TCGA-D9-A6EC-06 12 20774242 20774242 G A PDE3A Nonsense_Mutation p.W479* 0.48 TCGA-D9-A6EC-06 12 20852582 20852582 T G SLCO1C1 Silent p.S24S 0.21 TCGA-D9-A6EC-06 12 21069253 21069253 T C SLCO1B3 3'UTR 0.29 TCGA-D9-A6EC-06 12 21172306 21172306 C T SLCO1B7 Silent p.F70F 0.30 TCGA-D9-A6EC-06 12 21175871 21175871 C T SLCO1B7 Missense_Mutation p.P143L 0.46 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 12 21331632 21331632 G A SLCO1B1 Missense_Mutation p.E202K 0.49 deleterious(0.05) possibly_damaging(0.58) TCGA-D9-A6EC-06 12 21349891 21349891 A C SLCO1B1 Missense_Mutation p.I247L 0.48 deleterious(0) probably_damaging(0.947) TCGA-D9-A6EC-06 12 21970211 21970211 T C ABCC9 Missense_Mutation p.N1268D 0.25 deleterious(0.03) possibly_damaging(0.726) TCGA-D9-A6EC-06 12 21981964 21981964 C T ABCC9 Silent p.L1199L 0.42 TCGA-D9-A6EC-06 12 22078881 22078881 A T ABCC9 Missense_Mutation p.L134H 0.55 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 12 22211571 22211571 A C CMAS Missense_Mutation p.E210D 0.30 deleterious(0) benign(0.396) TCGA-D9-A6EC-06 12 22814004 22814004 A G ETNK1 Missense_Mutation p.S278G 0.24 tolerated(0.13) benign(0.173) TCGA-D9-A6EC-06 12 25054776 25054776 C T BCAT1 Missense_Mutation p.G29E 0.44 tolerated(0.26) benign(0.02) TCGA-D9-A6EC-06 12 25232332 25232332 G A LRMP Silent p.R24R 0.52 TCGA-D9-A6EC-06 12 25255174 25255174 A G LRMP Missense_Mutation p.K311R 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-D9-A6EC-06 12 26492299 26492299 G A ITPR2 3'UTR 0.28 TCGA-D9-A6EC-06 12 26709213 26709213 G A ITPR2 Silent p.F1639F 0.19 TCGA-D9-A6EC-06 12 26808662 26808662 T G ITPR2 Missense_Mutation p.E856D 0.15 tolerated(0.23) benign(0.05) TCGA-D9-A6EC-06 12 2702413 2702413 C T CACNA1C Silent p.V855V 0.38 TCGA-D9-A6EC-06 12 27070297 27070297 A C ASUN Missense_Mutation p.F353V 0.21 deleterious(0) probably_damaging(0.929) TCGA-D9-A6EC-06 12 27181444 27181444 A C MED21 3'UTR 0.57 TCGA-D9-A6EC-06 12 27470347 27470347 T A STK38L Missense_Mutation p.W306R 0.10 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 12 2760924 2760924 A C CACNA1C Missense_Mutation p.K1403T 0.21 deleterious(0.03) possibly_damaging(0.791) TCGA-D9-A6EC-06 12 2800218 2800218 C T CACNA1C Silent p.P2138P 0.60 TCGA-D9-A6EC-06 12 29649154 29649154 G A OVCH1 Missense_Mutation p.R81W 0.45 tolerated(0.1) benign(0.01) TCGA-D9-A6EC-06 12 2997175 2997175 C T RHNO1 Silent p.S89S 0.40 TCGA-D9-A6EC-06 12 31613308 31613308 T G DENND5B Missense_Mutation p.Q304H 0.13 tolerated(0.11) probably_damaging(0.966) TCGA-D9-A6EC-06 12 32137752 32137752 C A KIAA1551 Missense_Mutation p.P1288H 0.55 deleterious(0) possibly_damaging(0.794) TCGA-D9-A6EC-06 12 32446929 32446929 A C BICD1 Missense_Mutation p.N143T 0.14 tolerated(0.38) benign(0.016) TCGA-D9-A6EC-06 12 32735453 32735453 T G FGD4 Intron 0.36 TCGA-D9-A6EC-06 12 32777991 32777991 T C FGD4 Missense_Mutation p.S542P 0.27 tolerated(0.44) benign(0.001) TCGA-D9-A6EC-06 12 32994048 32994048 G A PKP2 Silent p.P534P 0.49 TCGA-D9-A6EC-06 12 33559964 33559964 C T SYT10 Silent p.R279R 0.43 TCGA-D9-A6EC-06 12 344360 344360 G A SLC6A13 Missense_Mutation p.L243F 0.32 tolerated(0.16) possibly_damaging(0.878) TCGA-D9-A6EC-06 12 431722 431722 A C KDM5A Missense_Mutation p.L763V 0.30 deleterious(0.03) possibly_damaging(0.824) TCGA-D9-A6EC-06 12 4479573 4479573 C T FGF23 Missense_Mutation p.R231Q 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.492) TCGA-D9-A6EC-06 12 46245027 46245027 C T ARID2 Nonsense_Mutation p.Q1041* 0.18 TCGA-D9-A6EC-06 12 46287531 46287531 A C ARID2 Intron 0.10 TCGA-D9-A6EC-06 12 46316814 46316814 T G SCAF11 Missense_Mutation p.S1344R 0.08 deleterious(0.02) possibly_damaging(0.623) TCGA-D9-A6EC-06 12 46598346 46598346 G A SLC38A1 Missense_Mutation p.S225F 0.16 deleterious(0) probably_damaging(0.916) TCGA-D9-A6EC-06 12 4668278 4668278 C T RAD51AP1 3'UTR 0.41 TCGA-D9-A6EC-06 12 4719332 4719332 T A DYRK4 Missense_Mutation p.F343I 0.49 tolerated(0.33) benign(0.016) TCGA-D9-A6EC-06 12 48104487 48104487 T G ENDOU 3'UTR 0.74 TCGA-D9-A6EC-06 12 48141403 48141403 A G RAPGEF3 Missense_Mutation p.S494P 0.15 tolerated(0.19) possibly_damaging(0.864) TCGA-D9-A6EC-06 12 48152382 48152382 G A RAPGEF3 5'UTR 0.56 TCGA-D9-A6EC-06 12 48501948 48501948 C T PFKM Missense_Mutation p.T59I 0.20 tolerated(0.36) benign(0.004) TCGA-D9-A6EC-06 12 48543103 48543103 A C ASB8 3'UTR 0.11 TCGA-D9-A6EC-06 12 48547310 48547310 T C ASB8 Intron 0.12 TCGA-D9-A6EC-06 12 4855405 4855405 A T GALNT8 Missense_Mutation p.N385I 0.49 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 12 48578049 48578049 A G C12orf68 Silent p.K48K 0.09 TCGA-D9-A6EC-06 12 48723717 48723717 G A H1FNT Missense_Mutation p.E215K 0.33 tolerated(0.19) possibly_damaging(0.502) TCGA-D9-A6EC-06 12 49087485 49087485 T C CCNT1 Silent p.R504R 0.08 TCGA-D9-A6EC-06 12 49087627 49087627 T C CCNT1 Missense_Mutation p.K457R 0.06 tolerated(0.14) probably_damaging(0.993) TCGA-D9-A6EC-06 12 49169185 49169185 G A ADCY6 Silent p.F627F 0.64 TCGA-D9-A6EC-06 12 49176868 49176868 G A ADCY6 Missense_Mutation p.S117F 0.75 deleterious(0.04) benign(0.165) TCGA-D9-A6EC-06 12 4920851 4920851 C T KCNA6 3'UTR 0.26 TCGA-D9-A6EC-06 12 49237773 49237773 T G DDX23 Silent p.R90R 0.41 TCGA-D9-A6EC-06 12 49390946 49390946 T C DDN Silent p.Q571Q 0.11 TCGA-D9-A6EC-06 12 49412663 49412663 C T PRKAG1 5'Flank 0.28 TCGA-D9-A6EC-06 12 49419970 49419970 G A KMT2D Missense_Mutation p.P5260L 0.20 unknown(0) TCGA-D9-A6EC-06 12 49444145 49444145 C T KMT2D Missense_Mutation p.E1076K 0.26 possibly_damaging(0.525) TCGA-D9-A6EC-06 12 49663313 49663313 C T TUBA1C Silent p.L23L 0.61 TCGA-D9-A6EC-06 12 49667042 49667042 T C TUBA1C 3'UTR 0.11 TCGA-D9-A6EC-06 12 49937234 49937234 G A KCNH3 Silent p.R252R 0.89 TCGA-D9-A6EC-06 12 49951747 49951747 T A KCNH3 3'UTR 0.32 TCGA-D9-A6EC-06 12 50388020 50388020 T G RACGAP1 Missense_Mutation p.K411N 0.43 deleterious(0.02) benign(0.126) TCGA-D9-A6EC-06 12 50598421 50598421 G A LIMA1 Missense_Mutation p.P260S 0.88 deleterious(0.02) probably_damaging(0.957) TCGA-D9-A6EC-06 12 51125255 51125255 T C DIP2B Missense_Mutation p.F1249L 0.12 tolerated(0.07) possibly_damaging(0.714) TCGA-D9-A6EC-06 12 5154040 5154040 C T KCNA5 Missense_Mutation p.P243S 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 12 51584253 51584253 C T POU6F1 Missense_Mutation p.G228E 0.52 deleterious(0) probably_damaging(0.957) TCGA-D9-A6EC-06 12 51868880 51868880 G A SLC4A8 Missense_Mutation p.G688R 0.97 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 12 521129 521129 A C CCDC77 Missense_Mutation p.E85D 0.16 tolerated(0.26) possibly_damaging(0.555) TCGA-D9-A6EC-06 12 52695781 52695781 C T KRT86 Silent p.I27I 0.40 TCGA-D9-A6EC-06 12 53041570 53041570 C T KRT2 Missense_Mutation p.E398K 0.89 deleterious(0) possibly_damaging(0.733) TCGA-D9-A6EC-06 12 53072528 53072528 C T KRT1 Missense_Mutation p.E202K 0.95 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 12 53169223 53169223 A C KRT76 Missense_Mutation p.L255R 0.49 deleterious(0) possibly_damaging(0.737) TCGA-D9-A6EC-06 12 53169353 53169353 C T KRT76 Missense_Mutation p.E212K 0.91 deleterious(0) probably_damaging(0.967) TCGA-D9-A6EC-06 12 53170589 53170589 T C KRT76 Missense_Mutation p.S163G 0.14 deleterious(0.01) probably_damaging(0.913) TCGA-D9-A6EC-06 12 53186074 53186074 C T KRT3 Silent p.E379E 0.30 TCGA-D9-A6EC-06 12 53204596 53204596 C T KRT4 Missense_Mutation p.E228K 0.89 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 12 53225324 53225324 C T KRT79 Silent p.R188R 0.97 TCGA-D9-A6EC-06 12 53670637 53670637 C T ESPL1 Missense_Mutation p.T645I 0.94 deleterious(0) possibly_damaging(0.768) TCGA-D9-A6EC-06 12 53900664 53900664 T C RP11-793H13.10 Missense_Mutation p.Y457C 0.33 benign(0.18) TCGA-D9-A6EC-06 12 54396416 54396416 G A HOXC9 Missense_Mutation p.M247I 0.94 deleterious(0.01) probably_damaging(0.932) TCGA-D9-A6EC-06 12 54405189 54405189 C T HOXC8 3'UTR 0.53 TCGA-D9-A6EC-06 12 54901649 54901649 G A NCKAP1L Missense_Mutation p.E107K 0.45 deleterious(0) probably_damaging(0.981) TCGA-D9-A6EC-06 12 54929976 54929976 C T NCKAP1L Missense_Mutation p.S1007F 0.89 deleterious(0) probably_damaging(0.92) TCGA-D9-A6EC-06 12 55759387 55759387 G A OR6C75 Missense_Mutation p.D165N 0.85 deleterious_low_confidence(0.02) benign(0.026) TCGA-D9-A6EC-06 12 55863832 55863832 G A OR6C70 Silent p.L31L 0.86 TCGA-D9-A6EC-06 12 55945370 55945370 T G OR6C4 Silent p.R120R 0.08 TCGA-D9-A6EC-06 12 56428479 56428479 C T IKZF4 Silent p.A374A 0.42 TCGA-D9-A6EC-06 12 57626290 57626290 C T SHMT2 Missense_Mutation p.R217W 0.45 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 12 57828774 57828774 A G INHBC Silent p.E35E 0.27 TCGA-D9-A6EC-06 12 57898081 57898081 A C MARS Missense_Mutation p.K456T 0.48 deleterious(0) possibly_damaging(0.562) TCGA-D9-A6EC-06 12 57957473 57957473 G A KIF5A Missense_Mutation p.M96I 0.96 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 12 57958276 57958276 C T KIF5A Missense_Mutation p.R144C 0.44 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 12 57966372 57966372 C T KIF5A Silent p.L527L 0.94 TCGA-D9-A6EC-06 12 58152436 58152436 A G MARCH9 Missense_Mutation p.K266R 0.26 deleterious(0.04) possibly_damaging(0.488) TCGA-D9-A6EC-06 12 58158863 58158863 A T CYP27B1 Missense_Mutation p.W241R 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-D9-A6EC-06 12 5841770 5841770 G A ANO2 Silent p.T487T 0.13 TCGA-D9-A6EC-06 12 6078383 6078383 G A VWF Missense_Mutation p.R2575C 0.35 deleterious(0.01) benign(0.066) TCGA-D9-A6EC-06 12 6091023 6091023 G A VWF Missense_Mutation p.P2406S 0.39 deleterious(0.01) possibly_damaging(0.857) TCGA-D9-A6EC-06 12 62936939 62936939 A G MON2 Missense_Mutation p.I809M 0.12 deleterious(0.01) possibly_damaging(0.748) TCGA-D9-A6EC-06 12 63963004 63963004 T C DPY19L2 Missense_Mutation p.K709R 0.28 tolerated(0.49) benign(0.044) TCGA-D9-A6EC-06 12 6438743 6438743 G A TNFRSF1A Missense_Mutation p.P368L 0.32 tolerated(0.06) probably_damaging(0.991) TCGA-D9-A6EC-06 12 64814155 64814155 C T XPOT Missense_Mutation p.H233Y 0.35 tolerated(1) benign(0.033) TCGA-D9-A6EC-06 12 6669263 6669263 C A NOP2 Splice_Site p.X630_splice 0.56 TCGA-D9-A6EC-06 12 6670910 6670910 G A NOP2 Missense_Mutation p.P409L 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 66725099 66725099 C T HELB Missense_Mutation p.R946C 0.95 deleterious(0.01) probably_damaging(0.983) TCGA-D9-A6EC-06 12 66856749 66856749 G A GRIP1 Missense_Mutation p.L333F 1.00 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 12 6702265 6702265 G A CHD4 Nonsense_Mutation p.Q882* 0.50 TCGA-D9-A6EC-06 12 68619522 68619522 G A IL26 Silent p.F5F 0.20 TCGA-D9-A6EC-06 12 69083318 69083318 G A NUP107 Missense_Mutation p.A36T 0.19 tolerated_low_confidence(0.56) benign(0.001) TCGA-D9-A6EC-06 12 69264140 69264140 G A CPM Silent p.P157P 0.25 TCGA-D9-A6EC-06 12 6942778 6942778 T C LEPREL2 Missense_Mutation p.L411P 0.22 deleterious(0) possibly_damaging(0.632) TCGA-D9-A6EC-06 12 6975183 6975183 C T USP5 Missense_Mutation p.S840F 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 12 6978873 6978873 A C TPI1 Missense_Mutation p.K197T 0.17 deleterious(0) probably_damaging(0.912) TCGA-D9-A6EC-06 12 69968623 69968623 C T FRS2 Missense_Mutation p.A472V 0.19 deleterious(0) possibly_damaging(0.846) TCGA-D9-A6EC-06 12 70004469 70004469 G A LRRC10 Silent p.S50S 0.13 TCGA-D9-A6EC-06 12 70209308 70209308 C T RAB3IP 3'UTR 0.21 TCGA-D9-A6EC-06 12 7084898 7084898 A C EMG1 Missense_Mutation p.N220T 0.06 deleterious(0.01) TCGA-D9-A6EC-06 12 70946640 70946640 T A PTPRB Silent p.A1768A 0.52 TCGA-D9-A6EC-06 12 70953341 70953341 C T PTPRB Nonsense_Mutation p.W1499* 0.59 TCGA-D9-A6EC-06 12 71155282 71155282 G A PTPRR Missense_Mutation p.S199F 0.92 deleterious(0.01) benign(0.429) TCGA-D9-A6EC-06 12 7173835 7173835 T G C1S Silent p.P295P 0.28 TCGA-D9-A6EC-06 12 72080451 72080451 C T TMEM19 5'UTR 1.00 TCGA-D9-A6EC-06 12 7242766 7242766 C T C1R Missense_Mutation p.E103K 0.50 tolerated(0.11) benign(0.17) TCGA-D9-A6EC-06 12 72969163 72969163 C T TRHDE Missense_Mutation p.H709Y 0.79 tolerated(0.31) possibly_damaging(0.875) TCGA-D9-A6EC-06 12 73046836 73046836 C T TRHDE Nonsense_Mutation p.Q917* 0.31 TCGA-D9-A6EC-06 12 7360388 7360388 A T PEX5 Missense_Mutation p.K382M 0.13 deleterious(0.02) benign(0.426) TCGA-D9-A6EC-06 12 7527138 7527138 C T CD163L1 Silent p.L1103L 0.49 TCGA-D9-A6EC-06 12 75698650 75698650 G A CAPS2 Silent p.V241V 0.86 TCGA-D9-A6EC-06 12 7633762 7633762 G A CD163 Missense_Mutation p.S1113F 0.40 tolerated(0.11) possibly_damaging(0.653) TCGA-D9-A6EC-06 12 7635336 7635336 G A CD163 Silent p.S1050S 0.48 TCGA-D9-A6EC-06 12 7636167 7636167 C T CD163 Missense_Mutation p.D962N 0.41 deleterious(0.05) benign(0.134) TCGA-D9-A6EC-06 12 7640390 7640390 C T CD163 Missense_Mutation p.D572N 0.34 tolerated(0.2) probably_damaging(0.948) TCGA-D9-A6EC-06 12 7654023 7654023 C T CD163 Missense_Mutation p.E57K 0.51 tolerated(0.48) benign(0.042) TCGA-D9-A6EC-06 12 7842960 7842960 C T GDF3 Silent p.E203E 0.46 TCGA-D9-A6EC-06 12 7868817 7868817 G A DPPA3 Silent p.K117K 0.33 TCGA-D9-A6EC-06 12 7898973 7898973 G A CLEC4C Silent p.V26V 0.46 TCGA-D9-A6EC-06 12 8048301 8048301 A G NANOGP1 RNA 0.38 TCGA-D9-A6EC-06 12 80729890 80729890 G A OTOGL Missense_Mutation p.D1515N 0.89 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 12 80749599 80749599 T G OTOGL Missense_Mutation p.L1884V 0.16 tolerated(0.52) possibly_damaging(0.503) TCGA-D9-A6EC-06 12 80750684 80750684 C T OTOGL Silent p.S1994S 1.00 TCGA-D9-A6EC-06 12 81101758 81101758 G A MYF6 Missense_Mutation p.R87K 0.91 deleterious(0.03) benign(0.253) TCGA-D9-A6EC-06 12 81110975 81110975 G A MYF5 Missense_Mutation p.E45K 1.00 tolerated(0.11) benign(0.003) TCGA-D9-A6EC-06 12 81660752 81660752 T A PPFIA2 Silent p.G1178G 0.85 TCGA-D9-A6EC-06 12 81851606 81851606 C T PPFIA2 Missense_Mutation p.E115K 0.80 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 12 88898998 88898998 T G KITLG Missense_Mutation p.K266T 0.50 tolerated(0.12) possibly_damaging(0.845) TCGA-D9-A6EC-06 12 8994108 8994108 G A A2ML1 Nonsense_Mutation p.W408* 0.35 TCGA-D9-A6EC-06 12 90028617 90028617 G A ATP2B1 Missense_Mutation p.S242L 0.96 deleterious(0) possibly_damaging(0.645) TCGA-D9-A6EC-06 12 9258881 9258881 A G A2M Missense_Mutation p.F352S 0.18 deleterious(0) probably_damaging(0.963) TCGA-D9-A6EC-06 12 9333577 9333577 A T PZP Splice_Site p.X613_splice 0.19 TCGA-D9-A6EC-06 12 95603295 95603295 A G FGD6 Missense_Mutation p.S589P 0.19 tolerated(0.15) benign(0.008) TCGA-D9-A6EC-06 12 95604274 95604274 T G FGD6 Missense_Mutation p.K262N 0.29 tolerated_low_confidence(0.52) benign(0.005) TCGA-D9-A6EC-06 12 96429168 96429168 G A LTA4H Nonsense_Mutation p.Q44* 1.00 TCGA-D9-A6EC-06 12 97078948 97078948 G A C12orf55 Silent p.E1982E 0.86 TCGA-D9-A6EC-06 12 9885741 9885741 C T CLECL1 Silent p.G40G 0.49 TCGA-D9-A6EC-06 12 99007541 99007541 G A IKBIP Missense_Mutation p.S292F 0.90 deleterious(0) benign(0.273) TCGA-D9-A6EC-06 12 99201651 99201651 G A ANKS1B Intron 0.92 TCGA-D9-A6EC-06 12 99640478 99640478 A C ANKS1B Missense_Mutation p.L641V 0.28 tolerated(0.25) benign(0.256) TCGA-D9-A6EC-06 12 9980137 9980137 G A KLRF1 5'UTR 0.42 TCGA-D9-A6EC-06 13 103309512 103309512 A T TPP2 Missense_Mutation p.E1020V 0.26 deleterious(0) probably_damaging(0.919) TCGA-D9-A6EC-06 13 103440208 103440208 G A KDELC1 Silent p.F453F 0.39 TCGA-D9-A6EC-06 13 103492122 103492122 C T BIVM-ERCC5 Silent p.F445F 0.58 TCGA-D9-A6EC-06 13 103701739 103701739 G A SLC10A2 Silent p.I273I 0.40 TCGA-D9-A6EC-06 13 103718602 103718602 C T SLC10A2 5'UTR 0.22 TCGA-D9-A6EC-06 13 107211810 107211810 T A ARGLU1 Missense_Mutation p.Q181H 0.25 tolerated(0.08) benign(0.387) TCGA-D9-A6EC-06 13 111082992 111082992 C T COL4A2 Intron 0.55 TCGA-D9-A6EC-06 13 111119431 111119431 C T COL4A2 Missense_Mutation p.P695S 0.24 benign(0.214) TCGA-D9-A6EC-06 13 111176530 111176530 G A RAB20 Missense_Mutation p.H63Y 0.61 tolerated(0.24) benign(0.327) TCGA-D9-A6EC-06 13 111176531 111176531 G A RAB20 Silent p.F62F 0.63 TCGA-D9-A6EC-06 13 114312473 114312473 A T ATP4B 5'UTR 0.55 TCGA-D9-A6EC-06 13 114530088 114530088 C T GAS6 Missense_Mutation p.G453E 0.51 tolerated(0.26) possibly_damaging(0.859) TCGA-D9-A6EC-06 13 114766406 114766406 A G RASA3 Missense_Mutation p.F582S 0.23 tolerated(0.43) benign(0.024) TCGA-D9-A6EC-06 13 115090640 115090640 A C CHAMP1 Missense_Mutation p.K441N 0.08 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 13 115090946 115090946 A G CHAMP1 Silent p.P543P 0.28 TCGA-D9-A6EC-06 13 21562821 21562821 G A LATS2 Silent p.S366S 0.35 TCGA-D9-A6EC-06 13 21742415 21742415 G A SKA3 Missense_Mutation p.S152F 0.47 tolerated(0.28) benign(0.397) TCGA-D9-A6EC-06 13 22095462 22095462 G A MICU2 Silent p.P173P 0.46 TCGA-D9-A6EC-06 13 23853581 23853581 G A SGCG Missense_Mutation p.E157K 0.16 tolerated(0.07) benign(0.012) TCGA-D9-A6EC-06 13 23904351 23904351 T G SACS Missense_Mutation p.E4555A 0.20 probably_damaging(0.991) TCGA-D9-A6EC-06 13 23905568 23905568 T C SACS Silent p.S4149S 0.06 TCGA-D9-A6EC-06 13 23909099 23909099 T G SACS Silent p.P2972P 0.29 TCGA-D9-A6EC-06 13 23911734 23911734 A G SACS Missense_Mutation p.V2094A 0.37 benign(0.002) TCGA-D9-A6EC-06 13 23913876 23913876 G A SACS Missense_Mutation p.P1380L 0.58 probably_damaging(0.999) TCGA-D9-A6EC-06 13 23929328 23929328 T C SACS Missense_Mutation p.R475G 0.11 probably_damaging(0.992) TCGA-D9-A6EC-06 13 24890232 24890232 C T C1QTNF9 Missense_Mutation p.P31S 0.44 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 13 25023890 25023890 A C PARP4 Missense_Mutation p.F1027C 0.13 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 13 25073475 25073475 T C PARP4 Silent p.Q147Q 0.12 TCGA-D9-A6EC-06 13 25370395 25370395 G A RNF17 Missense_Mutation p.R454K 0.55 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 13 25370401 25370401 C T RNF17 Missense_Mutation p.S456L 0.55 tolerated(0.25) benign(0.001) TCGA-D9-A6EC-06 13 25670659 25670659 A T PABPC3 Missense_Mutation p.K108M 0.21 deleterious(0) possibly_damaging(0.776) TCGA-D9-A6EC-06 13 27643412 27643412 G A USP12 3'UTR 0.63 TCGA-D9-A6EC-06 13 28011316 28011316 T C MTIF3 Silent p.K185K 0.17 TCGA-D9-A6EC-06 13 28844889 28844889 C T PAN3 Missense_Mutation p.S615F 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 13 29012441 29012441 C T FLT1 Missense_Mutation p.E144K 0.48 tolerated(0.41) benign(0.021) TCGA-D9-A6EC-06 13 29599299 29599299 C T MTUS2 Missense_Mutation p.P165L 0.57 deleterious(0.04) benign(0.006) TCGA-D9-A6EC-06 13 30096455 30096455 A G SLC7A1 Silent p.A396A 0.07 TCGA-D9-A6EC-06 13 30097515 30097515 G A SLC7A1 Missense_Mutation p.P313S 0.53 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 13 32351530 32351530 C T RXFP2 Missense_Mutation p.P220L 0.69 tolerated(0.14) benign(0.443) TCGA-D9-A6EC-06 13 32367040 32367040 G A RXFP2 Missense_Mutation p.G534E 0.56 deleterious(0.01) possibly_damaging(0.771) TCGA-D9-A6EC-06 13 32798458 32798458 G A FRY Missense_Mutation p.G1618R 0.48 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 13 32913502 32913502 T G BRCA2 Silent p.A1670A 0.21 TCGA-D9-A6EC-06 13 33110119 33110119 G A N4BP2L2 Intron 0.62 TCGA-D9-A6EC-06 13 33629236 33629236 G A KL Missense_Mutation p.M461I 0.35 tolerated(0.3) benign(0.012) TCGA-D9-A6EC-06 13 35644042 35644042 C T NBEA Intron 0.56 TCGA-D9-A6EC-06 13 36026318 36026318 G A NBEA Missense_Mutation p.G2132R 0.23 deleterious(0.01) possibly_damaging(0.758) TCGA-D9-A6EC-06 13 37012811 37012811 A C CCNA1 Missense_Mutation p.K234Q 0.13 tolerated(0.08) benign(0.005) TCGA-D9-A6EC-06 13 37679313 37679313 G A CSNK1A1L Silent p.S27S 0.39 TCGA-D9-A6EC-06 13 37679314 37679314 G A CSNK1A1L Missense_Mutation p.S27F 0.40 deleterious_low_confidence(0) benign(0.023) TCGA-D9-A6EC-06 13 38211736 38211736 G A TRPC4 Silent p.F751F 0.44 TCGA-D9-A6EC-06 13 38320186 38320186 G A TRPC4 Missense_Mutation p.S262F 0.52 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 13 39265223 39265223 T G FREM2 Missense_Mutation p.L1248V 0.09 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 13 39265891 39265891 A T FREM2 Missense_Mutation p.E1470D 0.49 deleterious(0.01) possibly_damaging(0.874) TCGA-D9-A6EC-06 13 39546732 39546732 C T STOML3 Splice_Site p.X77_splice 0.52 TCGA-D9-A6EC-06 13 39550907 39550907 C A STOML3 Missense_Mutation p.C27F 0.55 tolerated(0.07) probably_damaging(0.996) TCGA-D9-A6EC-06 13 39550908 39550908 A T STOML3 Missense_Mutation p.C27S 0.57 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 13 41657044 41657044 T G WBP4 Missense_Mutation p.D375E 0.15 deleterious(0) probably_damaging(0.968) TCGA-D9-A6EC-06 13 41705998 41705998 A G KBTBD6 Missense_Mutation p.L217P 0.10 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 13 42769021 42769021 T G DGKH Missense_Mutation p.V679G 0.30 tolerated(0.27) benign(0) TCGA-D9-A6EC-06 13 42875717 42875717 T A AKAP11 Silent p.S945S 0.24 TCGA-D9-A6EC-06 13 45768653 45768653 T G KCTD4 Missense_Mutation p.K17T 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-D9-A6EC-06 13 47409368 47409368 G A HTR2A Silent p.F340F 0.57 TCGA-D9-A6EC-06 13 47409494 47409494 C T HTR2A Silent p.S298S 0.50 TCGA-D9-A6EC-06 13 48660545 48660545 A G MED4 Missense_Mutation p.L79P 0.11 deleterious(0.04) probably_damaging(0.939) TCGA-D9-A6EC-06 13 48830410 48830410 T G ITM2B Missense_Mutation p.I115S 0.13 deleterious(0) benign(0.261) TCGA-D9-A6EC-06 13 49281117 49281117 G A CYSLTR2 Missense_Mutation p.G55E 0.34 deleterious(0.03) possibly_damaging(0.873) TCGA-D9-A6EC-06 13 50092191 50092191 G A PHF11 Missense_Mutation p.G121E 0.21 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 13 50489269 50489269 T C SPRYD7 Missense_Mutation p.Q174R 0.12 tolerated(0.55) benign(0.424) TCGA-D9-A6EC-06 13 52035376 52035376 C T RPS4XP16 RNA 0.45 TCGA-D9-A6EC-06 13 52329528 52329528 A C WDFY2 Missense_Mutation p.K289T 0.21 tolerated(0.17) probably_damaging(0.998) TCGA-D9-A6EC-06 13 52544883 52544883 T G ATP7B Missense_Mutation p.S430R 0.09 tolerated(0.22) benign(0.017) TCGA-D9-A6EC-06 13 52548509 52548509 G A ATP7B Silent p.L283L 0.29 TCGA-D9-A6EC-06 13 52602717 52602717 A T ALG11 Missense_Mutation p.L490F 0.47 tolerated(0.12) probably_damaging(0.988) TCGA-D9-A6EC-06 13 53049027 53049027 C T CKAP2 Intron 0.30 TCGA-D9-A6EC-06 13 53277896 53277896 C T LECT1 Missense_Mutation p.G280E 0.26 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 13 53624494 53624494 C T OLFM4 Missense_Mutation p.S374L 0.37 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 13 53624671 53624671 C T OLFM4 Missense_Mutation p.A433V 0.38 deleterious(0.02) possibly_damaging(0.58) TCGA-D9-A6EC-06 13 60453509 60453509 T C DIAPH3 Missense_Mutation p.M821V 0.27 tolerated(1) benign(0.145) TCGA-D9-A6EC-06 13 72256015 72256015 C T DACH1 Silent p.R294R 0.53 TCGA-D9-A6EC-06 13 74420310 74420310 G A KLF12 Silent p.S108S 0.21 TCGA-D9-A6EC-06 13 76415946 76415946 G A LMO7 Silent p.P1053P 0.35 TCGA-D9-A6EC-06 13 77638818 77638818 T C MYCBP2 Missense_Mutation p.T4164A 0.23 probably_damaging(0.952) TCGA-D9-A6EC-06 13 77785366 77785366 A T MYCBP2 Missense_Mutation p.S1080T 0.11 possibly_damaging(0.829) TCGA-D9-A6EC-06 13 84454472 84454472 G A SLITRK1 Nonsense_Mutation p.R391* 0.35 TCGA-D9-A6EC-06 13 84454493 84454493 C T SLITRK1 Missense_Mutation p.D384N 0.37 tolerated(0.16) benign(0.063) TCGA-D9-A6EC-06 13 86369317 86369317 C A SLITRK6 Nonsense_Mutation p.E443* 0.19 TCGA-D9-A6EC-06 13 88329204 88329204 C T SLITRK5 Missense_Mutation p.P521S 0.69 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 13 92345534 92345534 C T GPC5 Missense_Mutation p.S140L 0.33 tolerated(0.66) benign(0.426) TCGA-D9-A6EC-06 13 92346123 92346123 A C GPC5 Missense_Mutation p.K336N 0.29 tolerated(0.08) benign(0.014) TCGA-D9-A6EC-06 13 96230255 96230255 A C CLDN10 Missense_Mutation p.N225T 0.12 deleterious(0) benign(0.14) TCGA-D9-A6EC-06 13 96282324 96282324 G A DZIP1 Silent p.I243I 0.64 TCGA-D9-A6EC-06 13 97485276 97485276 C T HS6ST3 Missense_Mutation p.L414F 0.30 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 13 99481643 99481643 G A DOCK9 Missense_Mutation p.S1605F 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 13 99537226 99537226 C T DOCK9 Missense_Mutation p.R794K 0.50 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 14 100172838 100172838 C T CYP46A1 Intron 0.30 TCGA-D9-A6EC-06 14 100172937 100172937 C T CYP46A1 Intron 0.47 TCGA-D9-A6EC-06 14 100173902 100173902 C T CYP46A1 Intron 0.50 TCGA-D9-A6EC-06 14 100188359 100188359 A G CYP46A1 Missense_Mutation p.T378A 0.16 tolerated(0.53) benign(0.014) TCGA-D9-A6EC-06 14 100404244 100404244 T G EML1 Missense_Mutation p.V748G 0.22 deleterious(0) benign(0.419) TCGA-D9-A6EC-06 14 100406351 100406351 A G EML1 Missense_Mutation p.S803G 0.16 tolerated(0.2) possibly_damaging(0.492) TCGA-D9-A6EC-06 14 100607563 100607563 G A EVL Missense_Mutation p.D381N 0.43 deleterious(0) possibly_damaging(0.864) TCGA-D9-A6EC-06 14 100795883 100795883 G A SLC25A47 Silent p.K276K 0.48 TCGA-D9-A6EC-06 14 100828170 100828170 G T WARS Missense_Mutation p.P63H 0.46 deleterious(0.01) possibly_damaging(0.89) TCGA-D9-A6EC-06 14 100996433 100996433 C T WDR25 3'UTR 0.59 TCGA-D9-A6EC-06 14 101351128 101351128 C T RTL1 5'UTR 0.31 TCGA-D9-A6EC-06 14 101438483 101438483 G A SNORD114-14 RNA 0.53 TCGA-D9-A6EC-06 14 101456427 101456427 C T SNORD114-28 3'Flank 0.22 TCGA-D9-A6EC-06 14 101515919 101515919 C T MIR655 RNA 0.51 TCGA-D9-A6EC-06 14 102442086 102442086 C T DYNC1H1 Silent p.F98F 0.38 TCGA-D9-A6EC-06 14 102446267 102446267 C T DYNC1H1 Nonsense_Mutation p.Q244* 0.42 TCGA-D9-A6EC-06 14 102449476 102449476 T C DYNC1H1 Missense_Mutation p.F361S 0.24 probably_damaging(1) TCGA-D9-A6EC-06 14 102483127 102483127 C T DYNC1H1 Missense_Mutation p.P2547S 0.25 benign(0.003) TCGA-D9-A6EC-06 14 102505054 102505054 T A DYNC1H1 Missense_Mutation p.L3692H 0.28 probably_damaging(0.976) TCGA-D9-A6EC-06 14 102901439 102901439 T G TECPR2 Missense_Mutation p.L762R 0.07 deleterious(0) probably_damaging(0.929) TCGA-D9-A6EC-06 14 103802254 103802254 C T EIF5 Silent p.P19P 0.20 TCGA-D9-A6EC-06 14 104216268 104216268 G A PPP1R13B Missense_Mutation p.R278C 0.36 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 14 104245089 104245089 T G PPP1R13B Missense_Mutation p.E116A 0.21 deleterious(0.05) benign(0.002) TCGA-D9-A6EC-06 14 104642682 104642682 C T KIF26A Missense_Mutation p.S1186F 0.40 tolerated(0.22) benign(0.365) TCGA-D9-A6EC-06 14 105346728 105346728 C T CEP170B Silent p.P146P 0.34 TCGA-D9-A6EC-06 14 105360106 105360106 C T CEP170B Silent p.F1397F 0.65 TCGA-D9-A6EC-06 14 105411708 105411708 G A AHNAK2 Silent p.L3360L 0.52 TCGA-D9-A6EC-06 14 105416016 105416016 G A AHNAK2 Silent p.P1924P 0.47 TCGA-D9-A6EC-06 14 105416350 105416350 T C AHNAK2 Missense_Mutation p.D1813G 0.06 probably_damaging(0.969) TCGA-D9-A6EC-06 14 105958612 105958612 G A C14orf80 Missense_Mutation p.R132Q 0.37 deleterious(0.03) possibly_damaging(0.639) TCGA-D9-A6EC-06 14 105958614 105958614 G A C14orf80 Missense_Mutation p.V133M 0.37 deleterious(0.02) possibly_damaging(0.897) TCGA-D9-A6EC-06 14 106053512 106053512 T G IGHA2 Missense_Mutation p.K262T 0.25 tolerated(0.16) benign(0.337) TCGA-D9-A6EC-06 14 106110118 106110118 T C IGHG2 Missense_Mutation p.K167R 0.24 tolerated(0.66) benign(0.001) TCGA-D9-A6EC-06 14 106552532 106552532 G A IGHV3-9 Missense_Mutation p.S36F 0.90 deleterious_low_confidence(0.01) benign(0.331) TCGA-D9-A6EC-06 14 106586243 106586243 G A IGHV3-13 Missense_Mutation p.S81F 0.48 deleterious_low_confidence(0.01) benign(0.231) TCGA-D9-A6EC-06 14 106757688 106757688 C T IGHV2-26 Missense_Mutation p.D107N 0.52 tolerated(0.19) benign(0.067) TCGA-D9-A6EC-06 14 106805296 106805296 G A IGHV4-31 Silent p.T89T 0.16 TCGA-D9-A6EC-06 14 106829774 106829774 G A IGHV4-34 Silent p.I63I 0.52 TCGA-D9-A6EC-06 14 106866576 106866576 G A IGHV3-38 Missense_Mutation p.P60S 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.669) TCGA-D9-A6EC-06 14 106877924 106877924 C T IGHV4-39 Missense_Mutation p.V24I 0.18 tolerated(0.1) benign(0.057) TCGA-D9-A6EC-06 14 106926429 106926429 C T IGHV3-43 Missense_Mutation p.R38K 0.20 tolerated_low_confidence(0.24) benign(0.118) TCGA-D9-A6EC-06 14 106963163 106963163 G A IGHV1-45 Missense_Mutation p.S40F 0.23 deleterious(0.02) probably_damaging(0.922) TCGA-D9-A6EC-06 14 107013093 107013093 C T IGHV3-49 Missense_Mutation p.G68S 0.43 tolerated_low_confidence(0.95) benign(0.21) TCGA-D9-A6EC-06 14 107034961 107034961 G A IGHV5-51 Missense_Mutation p.S40F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 14 107049075 107049075 C T IGHV3-53 Missense_Mutation p.G16S 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.669) TCGA-D9-A6EC-06 14 107179048 107179048 G A IGHV2-70 Silent p.F43F 0.26 TCGA-D9-A6EC-06 14 107179095 107179095 G A IGHV2-70 Missense_Mutation p.P28S 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 14 107219081 107219081 C T IGHV3-74 Intron 0.47 TCGA-D9-A6EC-06 14 19377893 19377893 C T OR11H12 Silent p.F100F 0.18 TCGA-D9-A6EC-06 14 19553374 19553374 G A POTEG 5'UTR 0.10 TCGA-D9-A6EC-06 14 19553512 19553512 C T POTEG Silent p.F32F 0.12 TCGA-D9-A6EC-06 14 20344938 20344938 C T OR4K2 Missense_Mutation p.P171L 0.34 deleterious(0) possibly_damaging(0.903) TCGA-D9-A6EC-06 14 20404475 20404475 C T OR4K1 Missense_Mutation p.S217F 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 14 20444260 20444260 C T OR4K15 Missense_Mutation p.P195S 0.55 deleterious(0.03) possibly_damaging(0.865) TCGA-D9-A6EC-06 14 20444293 20444293 C T OR4K15 Missense_Mutation p.P206S 0.58 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 14 20483333 20483333 G A OR4K14 Missense_Mutation p.S7F 0.65 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A6EC-06 14 20528862 20528862 T C OR4L1 Missense_Mutation p.V220A 0.08 deleterious(0.04) benign(0.163) TCGA-D9-A6EC-06 14 20586468 20586468 C T OR4K17 Silent p.F301F 0.18 TCGA-D9-A6EC-06 14 20612791 20612791 G A OR4N5 Silent p.R299R 0.36 TCGA-D9-A6EC-06 14 20665881 20665881 C T OR11G2 Silent p.I129I 0.21 TCGA-D9-A6EC-06 14 20822247 20822247 G A PARP2 Missense_Mutation p.E215K 0.18 tolerated(0.19) benign(0.002) TCGA-D9-A6EC-06 14 20874556 20874556 G A TEP1 Missense_Mutation p.R191C 0.26 tolerated_low_confidence(0.19) benign(0.001) TCGA-D9-A6EC-06 14 20928453 20928453 A C TMEM55B Missense_Mutation p.I120S 0.49 deleterious(0) probably_damaging(0.961) TCGA-D9-A6EC-06 14 20943076 20943076 C T PNP Nonsense_Mutation p.Q144* 0.26 TCGA-D9-A6EC-06 14 21462765 21462765 C T METTL17 Missense_Mutation p.S254L 0.17 deleterious(0) probably_damaging(0.972) TCGA-D9-A6EC-06 14 21500139 21500139 A G TPPP2 Missense_Mutation p.K139R 0.23 tolerated(0.16) probably_damaging(0.973) TCGA-D9-A6EC-06 14 21623343 21623343 G A OR5AU1 Missense_Mutation p.S281L 0.22 deleterious(0) benign(0.3) TCGA-D9-A6EC-06 14 21796680 21796680 A G RPGRIP1 Missense_Mutation p.Q998R 0.22 tolerated(0.07) probably_damaging(0.998) TCGA-D9-A6EC-06 14 21873383 21873383 G A CHD8 Missense_Mutation p.P1098S 0.65 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 14 21876912 21876912 C T CHD8 Missense_Mutation p.E813K 0.46 deleterious(0) probably_damaging(0.968) TCGA-D9-A6EC-06 14 21992836 21992836 A G SALL2 Silent p.T342T 0.16 TCGA-D9-A6EC-06 14 22090560 22090560 G A TRAV1-1 Missense_Mutation p.D56N 0.21 tolerated(0.3) benign(0.005) TCGA-D9-A6EC-06 14 22090581 22090581 C T TRAV1-1 Missense_Mutation p.L63F 0.23 deleterious(0.01) probably_damaging(0.959) TCGA-D9-A6EC-06 14 22102785 22102785 A G OR10G2 Missense_Mutation p.S72P 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-D9-A6EC-06 14 22111158 22111158 G A TRAV1-2 5'UTR 0.15 TCGA-D9-A6EC-06 14 22133914 22133914 C T OR4E2 Silent p.I206I 0.66 TCGA-D9-A6EC-06 14 22521083 22521083 G A TRAV21 Missense_Mutation p.G35E 0.64 deleterious(0.01) probably_damaging(0.995) TCGA-D9-A6EC-06 14 23013024 23013024 G A TRAJ2 Missense_Mutation p.G4E 0.42 unknown(0) TCGA-D9-A6EC-06 14 23079927 23079927 C T ABHD4 3'UTR 0.40 TCGA-D9-A6EC-06 14 23344947 23344947 A G LRP10 Missense_Mutation p.S264G 0.29 deleterious(0.03) benign(0.212) TCGA-D9-A6EC-06 14 23398558 23398558 C T PRMT5 Missense_Mutation p.A5T 0.40 tolerated_low_confidence(0.21) unknown(0) TCGA-D9-A6EC-06 14 23421823 23421823 T A HAUS4 Missense_Mutation p.K42M 0.27 deleterious(0) possibly_damaging(0.86) TCGA-D9-A6EC-06 14 23745522 23745522 G A HOMEZ Silent p.P305P 0.44 TCGA-D9-A6EC-06 14 23848683 23848683 G A CMTM5 Missense_Mutation p.G153E 0.27 deleterious(0.05) benign(0.019) TCGA-D9-A6EC-06 14 23858183 23858183 C T MYH6 Missense_Mutation p.E1354K 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 14 23862725 23862725 C T MYH6 Silent p.V977V 0.68 TCGA-D9-A6EC-06 14 23863081 23863081 C T MYH6 Missense_Mutation p.D908N 0.39 tolerated(0.13) possibly_damaging(0.595) TCGA-D9-A6EC-06 14 23884860 23884860 C G MYH7 Missense_Mutation p.R1712P 0.21 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 14 23897104 23897104 C T MYH7 Splice_Site p.X527_splice 0.62 TCGA-D9-A6EC-06 14 24573103 24573103 T G PCK2 Missense_Mutation p.V618G 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-D9-A6EC-06 14 24619993 24619993 C T RNF31 Missense_Mutation p.P462S 0.30 tolerated(0.15) benign(0.002) TCGA-D9-A6EC-06 14 24632695 24632695 T C IRF9 Missense_Mutation p.V158A 0.07 tolerated(0.71) benign(0.014) TCGA-D9-A6EC-06 14 24728443 24728443 C T TGM1 Missense_Mutation p.D333N 0.18 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 14 24740348 24740348 G A RABGGTA 5'UTR 0.50 TCGA-D9-A6EC-06 14 24740349 24740349 G A RABGGTA 5'UTR 0.50 TCGA-D9-A6EC-06 14 24793406 24793406 C T ADCY4 Splice_Site p.X637_splice 0.24 TCGA-D9-A6EC-06 14 24845853 24845853 C T NFATC4 Missense_Mutation p.P867S 0.32 deleterious_low_confidence(0.01) benign(0.144) TCGA-D9-A6EC-06 14 24884995 24884995 C T NYNRIN Missense_Mutation p.P1347L 0.24 deleterious_low_confidence(0.04) benign(0.037) TCGA-D9-A6EC-06 14 24897116 24897116 G A CBLN3 Missense_Mutation p.T166I 0.37 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 14 25043680 25043680 C T CTSG Missense_Mutation p.R122Q 0.61 tolerated(0.45) benign(0.071) TCGA-D9-A6EC-06 14 28734242 28734242 C T BNIP3P1 RNA 0.54 TCGA-D9-A6EC-06 14 30103745 30103745 G A PRKD1 Missense_Mutation p.P398L 0.62 tolerated(0.05) benign(0.046) TCGA-D9-A6EC-06 14 30105694 30105694 A C PRKD1 Missense_Mutation p.L331R 0.34 tolerated(0.36) benign(0.022) TCGA-D9-A6EC-06 14 31374743 31374743 A C STRN3 Missense_Mutation p.V637G 0.31 deleterious(0) possibly_damaging(0.677) TCGA-D9-A6EC-06 14 31792954 31792954 C T HEATR5A Missense_Mutation p.D1202N 0.62 tolerated(0.07) possibly_damaging(0.709) TCGA-D9-A6EC-06 14 33004900 33004900 A G AKAP6 Silent p.R155R 0.13 TCGA-D9-A6EC-06 14 33205020 33205020 T G AKAP6 Missense_Mutation p.F1102V 0.24 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 14 33291740 33291740 G A AKAP6 Missense_Mutation p.G1574E 0.23 tolerated(0.08) benign(0.424) TCGA-D9-A6EC-06 14 34270072 34270072 C T NPAS3 Silent p.F853F 0.29 TCGA-D9-A6EC-06 14 35243540 35243540 G A BAZ1A Missense_Mutation p.A997V 0.16 tolerated(0.14) probably_damaging(0.935) TCGA-D9-A6EC-06 14 35742765 35742765 A C KIAA0391 Missense_Mutation p.K582T 0.32 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 14 35761608 35761608 C T PSMA6 5'UTR 0.24 TCGA-D9-A6EC-06 14 38060914 38060914 G A FOXA1 Missense_Mutation p.P359S 0.50 tolerated(0.41) benign(0.025) TCGA-D9-A6EC-06 14 39304769 39304769 C T LINC00639 RNA 0.27 TCGA-D9-A6EC-06 14 39304838 39304838 G A LINC00639 RNA 0.33 TCGA-D9-A6EC-06 14 39555014 39555014 A C SEC23A Silent p.P260P 0.25 TCGA-D9-A6EC-06 14 39560824 39560824 A G SEC23A Missense_Mutation p.S154P 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-D9-A6EC-06 14 45431792 45431792 C T FAM179B Silent p.D56D 0.47 TCGA-D9-A6EC-06 14 45431793 45431793 C T FAM179B Missense_Mutation p.H57Y 0.49 deleterious_low_confidence(0) benign(0.409) TCGA-D9-A6EC-06 14 45609904 45609904 G T FANCM Missense_Mutation p.D251Y 0.36 deleterious(0) possibly_damaging(0.864) TCGA-D9-A6EC-06 14 45620618 45620618 C T FANCM Missense_Mutation p.R313C 0.58 deleterious(0.02) benign(0.058) TCGA-D9-A6EC-06 14 51094858 51094858 G T ATL1 Missense_Mutation p.G410V 0.24 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 14 51224296 51224296 T G NIN Missense_Mutation p.E1151A 0.18 tolerated(0.12) possibly_damaging(0.539) TCGA-D9-A6EC-06 14 51446206 51446206 T G TRIM9 Missense_Mutation p.N657H 0.08 tolerated(0.23) benign(0.001) TCGA-D9-A6EC-06 14 52937239 52937239 A C TXNDC16 Missense_Mutation p.F491C 0.19 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 14 53560139 53560139 G A DDHD1 Nonsense_Mutation p.R346* 0.49 TCGA-D9-A6EC-06 14 55643912 55643912 G A DLGAP5 Missense_Mutation p.S306F 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 14 55655720 55655720 G A DLGAP5 Missense_Mutation p.L60F 0.44 tolerated(0.1) benign(0.077) TCGA-D9-A6EC-06 14 56757164 56757164 G A PELI2 Missense_Mutation p.R229Q 0.45 deleterious(0.05) possibly_damaging(0.722) TCGA-D9-A6EC-06 14 57675439 57675439 T G EXOC5 Missense_Mutation p.K672T 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-D9-A6EC-06 14 58605737 58605737 G A C14orf37 Missense_Mutation p.P114S 0.46 tolerated(0.38) benign(0) TCGA-D9-A6EC-06 14 60063454 60063454 G A RTN1 3'UTR 0.49 TCGA-D9-A6EC-06 14 60193883 60193883 C T RTN1 Missense_Mutation p.E507K 0.44 tolerated(0.22) benign(0.003) TCGA-D9-A6EC-06 14 60581501 60581501 T G PCNXL4 Missense_Mutation p.L24R 0.30 deleterious(0) possibly_damaging(0.808) TCGA-D9-A6EC-06 14 61180048 61180048 G A SIX4 3'UTR 0.53 TCGA-D9-A6EC-06 14 61186948 61186948 G A SIX4 Missense_Mutation p.S360L 0.46 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 14 62462918 62462918 C T SYT16 Nonsense_Mutation p.Q61* 0.47 TCGA-D9-A6EC-06 14 62547552 62547552 G A SYT16 Missense_Mutation p.E332K 0.27 deleterious(0.02) benign(0.272) TCGA-D9-A6EC-06 14 63468164 63468164 C T KCNH5 Nonsense_Mutation p.W106* 0.47 TCGA-D9-A6EC-06 14 64153079 64153079 A C SGPP1 Missense_Mutation p.I357S 0.24 deleterious(0) benign(0.197) TCGA-D9-A6EC-06 14 64421556 64421556 C T SYNE2 Missense_Mutation p.S237F 0.48 probably_damaging(0.997) TCGA-D9-A6EC-06 14 64542770 64542770 A C SYNE2 Missense_Mutation p.E3658D 0.09 benign(0.009) TCGA-D9-A6EC-06 14 64655412 64655412 G A SYNE2 Missense_Mutation p.E5953K 0.20 possibly_damaging(0.69) TCGA-D9-A6EC-06 14 65009024 65009024 A C HSPA2 Missense_Mutation p.N486T 0.23 deleterious_low_confidence(0) benign(0.024) TCGA-D9-A6EC-06 14 65209862 65209862 C T PLEKHG3 Missense_Mutation p.S978F 0.45 deleterious(0.02) possibly_damaging(0.681) TCGA-D9-A6EC-06 14 65233415 65233415 G A SPTB Intron 0.47 TCGA-D9-A6EC-06 14 65241895 65241895 T G SPTB Missense_Mutation p.E1597A 0.06 deleterious(0) probably_damaging(0.929) TCGA-D9-A6EC-06 14 67669881 67669881 C T FAM71D Missense_Mutation p.S77F 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 14 68008685 68008685 A G PLEKHH1 Missense_Mutation p.K34R 0.25 tolerated(0.11) possibly_damaging(0.877) TCGA-D9-A6EC-06 14 68028921 68028921 C T PLEKHH1 Silent p.V191V 0.26 TCGA-D9-A6EC-06 14 68028922 68028922 C T PLEKHH1 Missense_Mutation p.P192S 0.25 tolerated_low_confidence(0.19) benign(0.005) TCGA-D9-A6EC-06 14 68029253 68029253 G A PLEKHH1 Missense_Mutation p.R302K 0.12 tolerated_low_confidence(0.4) benign(0.002) TCGA-D9-A6EC-06 14 68060599 68060599 T A PIGH Missense_Mutation p.K84M 0.20 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 14 68265234 68265234 A C ZFYVE26 Missense_Mutation p.L582R 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 14 69529122 69529122 A G DCAF5 Silent p.S351S 0.19 TCGA-D9-A6EC-06 14 70171339 70171339 C T KIAA0247 Missense_Mutation p.S113L 0.19 tolerated(0.06) benign(0.036) TCGA-D9-A6EC-06 14 70512693 70512693 C T SLC8A3 Missense_Mutation p.E919K 0.27 deleterious(0) benign(0.222) TCGA-D9-A6EC-06 14 70633451 70633451 G A SLC8A3 Silent p.I563I 0.53 TCGA-D9-A6EC-06 14 70635073 70635073 G A SLC8A3 Missense_Mutation p.L23F 0.46 tolerated_low_confidence(0.16) benign(0.365) TCGA-D9-A6EC-06 14 70713437 70713437 C A ADAM21P1 RNA 0.41 TCGA-D9-A6EC-06 14 70924380 70924380 C G ADAM21 Missense_Mutation p.A55G 0.15 tolerated(0.13) benign(0.02) TCGA-D9-A6EC-06 14 70925170 70925170 A G ADAM21 Silent p.P318P 0.09 TCGA-D9-A6EC-06 14 70925425 70925425 C T ADAM21 Silent p.I403I 0.46 TCGA-D9-A6EC-06 14 71206706 71206706 G A MAP3K9 Intron 0.45 TCGA-D9-A6EC-06 14 71575515 71575515 C T PCNX Nonsense_Mutation p.Q2166* 0.26 TCGA-D9-A6EC-06 14 72137929 72137929 C T SIPA1L1 Silent p.F783F 0.45 TCGA-D9-A6EC-06 14 72196782 72196782 T A SIPA1L1 Missense_Mutation p.L1563H 0.17 tolerated(0.53) possibly_damaging(0.65) TCGA-D9-A6EC-06 14 72976911 72976911 G A RGS6 Missense_Mutation p.E339K 0.49 deleterious(0) probably_damaging(0.929) TCGA-D9-A6EC-06 14 74083831 74083831 G A ACOT6 5'UTR 0.40 TCGA-D9-A6EC-06 14 74205643 74205643 G A ELMSAN1 Missense_Mutation p.P357S 0.35 tolerated(0.29) benign(0) TCGA-D9-A6EC-06 14 74205829 74205829 G A ELMSAN1 Missense_Mutation p.P295S 0.50 tolerated(0.45) benign(0.279) TCGA-D9-A6EC-06 14 74439604 74439604 A T ENTPD5 Missense_Mutation p.V337D 0.19 deleterious(0) possibly_damaging(0.776) TCGA-D9-A6EC-06 14 74500850 74500850 C T CCDC176 Silent p.I157I 0.57 TCGA-D9-A6EC-06 14 74512815 74512815 C T CCDC176 Missense_Mutation p.A210V 0.44 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 14 74823892 74823892 T C VRTN Missense_Mutation p.S136P 0.10 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 14 74874154 74874154 G A SYNDIG1L 3'UTR 0.33 TCGA-D9-A6EC-06 14 74995186 74995186 C T LTBP2 Missense_Mutation p.G790S 0.51 tolerated(0.16) possibly_damaging(0.871) TCGA-D9-A6EC-06 14 75019628 75019628 G A LTBP2 Missense_Mutation p.H387Y 0.30 deleterious(0) probably_damaging(0.926) TCGA-D9-A6EC-06 14 75150160 75150160 A G AREL1 Missense_Mutation p.L107P 0.08 tolerated(0.38) probably_damaging(0.999) TCGA-D9-A6EC-06 14 75182668 75182668 C T FCF1 Missense_Mutation p.S53F 0.40 deleterious(0.01) benign(0.079) TCGA-D9-A6EC-06 14 75230721 75230721 C T YLPM1 Missense_Mutation p.P177S 0.61 unknown(0) TCGA-D9-A6EC-06 14 75296004 75296004 C T YLPM1 Silent p.P2084P 0.46 TCGA-D9-A6EC-06 14 75330486 75330486 G A PROX2 Silent p.L18L 0.46 TCGA-D9-A6EC-06 14 76045918 76045918 C T FLVCR2 Silent p.I201I 0.39 TCGA-D9-A6EC-06 14 76105705 76105705 C T FLVCR2 Silent p.L379L 0.39 TCGA-D9-A6EC-06 14 76549581 76549581 C T IFT43 Silent p.I157I 0.38 TCGA-D9-A6EC-06 14 77244361 77244361 C T VASH1 Silent p.S324S 0.56 TCGA-D9-A6EC-06 14 77273828 77273828 T G ANGEL1 Missense_Mutation p.E298D 0.32 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 14 77336518 77336518 C T C14orf166B 3'UTR 1.00 TCGA-D9-A6EC-06 14 77580309 77580309 C T CIPC Missense_Mutation p.S283L 0.56 tolerated(0.14) possibly_damaging(0.67) TCGA-D9-A6EC-06 14 77580456 77580456 T C CIPC Missense_Mutation p.I332T 0.23 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 14 77580486 77580486 A G CIPC Missense_Mutation p.Q342R 0.14 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 14 77702967 77702967 G A TMEM63C Silent p.E181E 0.54 TCGA-D9-A6EC-06 14 77723028 77723028 C T TMEM63C Nonsense_Mutation p.Q794* 0.42 TCGA-D9-A6EC-06 14 77791234 77791234 C T GSTZ1 Nonsense_Mutation p.R13* 0.50 TCGA-D9-A6EC-06 14 77844410 77844410 C T SAMD15 Missense_Mutation p.P217S 0.41 tolerated(0.2) benign(0.016) TCGA-D9-A6EC-06 14 77845059 77845059 C T SAMD15 Missense_Mutation p.S433F 0.30 tolerated(0.1) benign(0.332) TCGA-D9-A6EC-06 14 77919711 77919711 G A VIPAS39 Nonsense_Mutation p.R43* 0.49 TCGA-D9-A6EC-06 14 78399581 78399581 C T ADCK1 Silent p.T473T 0.41 TCGA-D9-A6EC-06 14 79111549 79111549 G A NRXN3 5'UTR 0.50 TCGA-D9-A6EC-06 14 80328215 80328215 C T NRXN3 Nonsense_Mutation p.Q1032* 0.42 TCGA-D9-A6EC-06 14 80668796 80668796 G A DIO2 3'Flank 0.68 TCGA-D9-A6EC-06 14 81736953 81736953 G A STON2 Intron 0.46 TCGA-D9-A6EC-06 14 82000023 82000023 G A SEL1L Silent p.S22S 0.35 TCGA-D9-A6EC-06 14 86089054 86089054 C T FLRT2 Missense_Mutation p.T399I 0.27 tolerated(0.4) benign(0.044) TCGA-D9-A6EC-06 14 86089658 86089658 G A FLRT2 Silent p.L600L 0.51 TCGA-D9-A6EC-06 14 86089716 86089716 G A FLRT2 Missense_Mutation p.G620R 0.44 deleterious(0.04) possibly_damaging(0.811) TCGA-D9-A6EC-06 14 88651881 88651881 A C KCNK10 Nonstop_Mutation p.*544Eext*2 0.15 TCGA-D9-A6EC-06 14 88652071 88652071 G A KCNK10 Silent p.T480T 0.44 TCGA-D9-A6EC-06 14 88883128 88883128 A C SPATA7 Missense_Mutation p.K104N 0.18 deleterious(0) probably_damaging(0.962) TCGA-D9-A6EC-06 14 88893049 88893049 G A SPATA7 Splice_Site p.X282_splice 0.12 TCGA-D9-A6EC-06 14 89068306 89068306 A C ZC3H14 Silent p.R465R 0.22 TCGA-D9-A6EC-06 14 90429841 90429841 A G TDP1 Missense_Mutation p.E128G 0.20 tolerated(0.47) benign(0) TCGA-D9-A6EC-06 14 90651400 90651400 C A KCNK13 3'UTR 0.58 TCGA-D9-A6EC-06 14 90870297 90870297 C T CALM1 Silent p.F90F 0.42 TCGA-D9-A6EC-06 14 91409504 91409504 T G RPS6KA5 Missense_Mutation p.K179T 0.08 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 14 91749709 91749709 A C CCDC88C Missense_Mutation p.S1532A 0.21 tolerated(0.1) benign(0.008) TCGA-D9-A6EC-06 14 91780405 91780405 C T CCDC88C Missense_Mutation p.M585I 0.35 tolerated(0.08) benign(0.004) TCGA-D9-A6EC-06 14 91937287 91937287 A C SMEK1 Missense_Mutation p.F505L 0.14 deleterious(0) probably_damaging(0.916) TCGA-D9-A6EC-06 14 92074738 92074738 C T CATSPERB Missense_Mutation p.R870K 0.64 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 14 92084075 92084075 G A CATSPERB Nonsense_Mutation p.R756* 0.29 TCGA-D9-A6EC-06 14 92278783 92278783 A C TC2N Silent p.T58T 0.18 TCGA-D9-A6EC-06 14 92484038 92484038 T C TRIP11 Silent p.Q215Q 0.58 TCGA-D9-A6EC-06 14 92959920 92959920 A C SLC24A4 Missense_Mutation p.E606A 0.18 deleterious(0) possibly_damaging(0.742) TCGA-D9-A6EC-06 14 93118036 93118036 C T RIN3 Silent p.A214A 0.42 TCGA-D9-A6EC-06 14 93118951 93118951 C T RIN3 Silent p.A519A 0.40 TCGA-D9-A6EC-06 14 93393029 93393029 A G CHGA Missense_Mutation p.E58G 0.24 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 14 93652630 93652630 T G RP11-371E8.4 Missense_Mutation p.F4V 0.20 deleterious_low_confidence(0) unknown(0) TCGA-D9-A6EC-06 14 93814374 93814374 G A COX8C Missense_Mutation p.E43K 0.42 deleterious(0.01) possibly_damaging(0.874) TCGA-D9-A6EC-06 14 94079227 94079227 T C UNC79 Missense_Mutation p.L1103P 0.21 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 14 94394965 94394965 G A FAM181A Missense_Mutation p.E174K 0.42 deleterious(0.04) possibly_damaging(0.625) TCGA-D9-A6EC-06 14 94405539 94405539 C T ASB2 Missense_Mutation p.G511D 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EC-06 14 94464424 94464424 C T LINC00521 RNA 0.63 TCGA-D9-A6EC-06 14 94545624 94545624 C T DDX24 Silent p.K155K 0.25 TCGA-D9-A6EC-06 14 94754631 94754631 C T SERPINA10 Missense_Mutation p.M328I 0.46 deleterious(0.01) possibly_damaging(0.746) TCGA-D9-A6EC-06 14 94754635 94754635 T A SERPINA10 Missense_Mutation p.N327I 0.22 deleterious(0) possibly_damaging(0.873) TCGA-D9-A6EC-06 14 94770782 94770782 G A SERPINA6 Silent p.F397F 0.48 TCGA-D9-A6EC-06 14 94780589 94780589 G A SERPINA6 Missense_Mutation p.L133F 0.52 tolerated(0.12) benign(0.237) TCGA-D9-A6EC-06 14 94780890 94780890 C T SERPINA6 Missense_Mutation p.M32I 0.41 tolerated(0.26) benign(0) TCGA-D9-A6EC-06 14 94933502 94933502 C T SERPINA9 Silent p.L300L 0.48 TCGA-D9-A6EC-06 14 95030380 95030380 G A SERPINA4 Silent p.K187K 0.09 TCGA-D9-A6EC-06 14 95035957 95035957 C T SERPINA4 3'UTR 0.29 TCGA-D9-A6EC-06 14 95057121 95057121 A G SERPINA5 Missense_Mutation p.E309G 0.26 deleterious(0.02) possibly_damaging(0.893) TCGA-D9-A6EC-06 14 95107730 95107730 G A SERPINA13P RNA 0.47 TCGA-D9-A6EC-06 14 95556899 95556899 G A DICER1 Missense_Mutation p.S1902F 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-D9-A6EC-06 14 95669509 95669509 A C CLMN Missense_Mutation p.L726R 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-D9-A6EC-06 14 96130030 96130030 C T TCL6 RNA 0.47 TCGA-D9-A6EC-06 14 96180332 96180332 G A TCL1A Silent p.F24F 0.41 TCGA-D9-A6EC-06 14 96707064 96707064 G A BDKRB2 Silent p.V133V 0.46 TCGA-D9-A6EC-06 14 99640660 99640660 T G BCL11B Missense_Mutation p.K838T 0.22 deleterious(0) benign(0.023) TCGA-D9-A6EC-06 15 100996203 100996203 G A CERS3 Silent p.F298F 0.37 TCGA-D9-A6EC-06 15 101009595 101009595 A C CERS3 Missense_Mutation p.V278G 0.23 deleterious(0) possibly_damaging(0.664) TCGA-D9-A6EC-06 15 101549061 101549061 C T LRRK1 Missense_Mutation p.S261F 0.50 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 15 101717525 101717525 G A CHSY1 3'UTR 0.33 TCGA-D9-A6EC-06 15 22332666 22332666 C T RP11-69H14.6 RNA 0.26 TCGA-D9-A6EC-06 15 22368839 22368839 G C OR4M2 Missense_Mutation p.E88D 0.23 tolerated(0.13) benign(0.184) TCGA-D9-A6EC-06 15 22369430 22369430 T A OR4M2 Missense_Mutation p.N285K 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 15 22850980 22850980 A C TUBGCP5 Missense_Mutation p.K414N 0.09 tolerated(0.17) benign(0.375) TCGA-D9-A6EC-06 15 22861793 22861793 C T TUBGCP5 Nonsense_Mutation p.R605* 0.26 TCGA-D9-A6EC-06 15 23114258 23114258 G A RP11-566K19.6 RNA 0.50 TCGA-D9-A6EC-06 15 24921347 24921347 C T NPAP1 Silent p.P111P 0.23 TCGA-D9-A6EC-06 15 25324084 25324084 G A SNORD116-12 3'Flank 0.38 TCGA-D9-A6EC-06 15 25324085 25324085 G A SNORD116-12 3'Flank 0.38 TCGA-D9-A6EC-06 15 25339188 25339188 C T SNORD116-24 RNA 0.48 TCGA-D9-A6EC-06 15 25422029 25422029 A T SNORD115-4 RNA 0.44 TCGA-D9-A6EC-06 15 25438453 25438453 G A SNORD115-11 3'Flank 0.92 TCGA-D9-A6EC-06 15 25442643 25442643 C T SNORD115-14 3'Flank 0.96 TCGA-D9-A6EC-06 15 26806111 26806111 T G GABRB3 Missense_Mutation p.K350Q 0.44 tolerated(0.51) benign(0.088) TCGA-D9-A6EC-06 15 27772727 27772727 C T GABRG3 Silent p.N338N 0.67 TCGA-D9-A6EC-06 15 27773116 27773116 G A GABRG3 Missense_Mutation p.R367Q 0.36 tolerated(0.42) benign(0.011) TCGA-D9-A6EC-06 15 30058574 30058574 T G TJP1 Missense_Mutation p.S162R 0.17 tolerated(0.08) probably_damaging(0.99) TCGA-D9-A6EC-06 15 33955077 33955077 G A RYR3 Silent p.G1782G 0.86 TCGA-D9-A6EC-06 15 34064240 34064240 C T RYR3 Missense_Mutation p.S2979F 0.88 probably_damaging(0.984) TCGA-D9-A6EC-06 15 34534414 34534414 G A SLC12A6 Missense_Mutation p.S684F 0.43 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 15 34567576 34567576 A G SLC12A6 Missense_Mutation p.S96P 0.44 tolerated(0.26) benign(0.003) TCGA-D9-A6EC-06 15 39910027 39910027 G A FSIP1 Silent p.S536S 0.96 TCGA-D9-A6EC-06 15 40093778 40093778 T C GPR176 Missense_Mutation p.Q368R 0.17 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 15 40462855 40462855 T C BUB1B Silent p.P119P 0.44 TCGA-D9-A6EC-06 15 40509752 40509752 T C BUB1B Missense_Mutation p.F912L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 15 40920278 40920278 A G CASC5 Missense_Mutation p.H1822R 0.11 tolerated(0.12) possibly_damaging(0.735) TCGA-D9-A6EC-06 15 41020921 41020921 T C RAD51 Silent p.S182S 0.44 TCGA-D9-A6EC-06 15 41228857 41228857 C T DLL4 Nonsense_Mutation p.R558* 1.00 TCGA-D9-A6EC-06 15 41272555 41272555 G A INO80 Missense_Mutation p.P1513S 0.83 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-D9-A6EC-06 15 42109932 42109932 C T MAPKBP1 Missense_Mutation p.R641W 1.00 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 15 42111098 42111098 A G MAPKBP1 Missense_Mutation p.Q751R 0.50 tolerated(0.19) possibly_damaging(0.893) TCGA-D9-A6EC-06 15 42276095 42276095 C T PLA2G4E Missense_Mutation p.E822K 0.38 tolerated(0.53) probably_damaging(0.985) TCGA-D9-A6EC-06 15 42276096 42276096 C T PLA2G4E Silent p.K821K 0.38 TCGA-D9-A6EC-06 15 42453969 42453969 G A VPS39 Silent p.V821V 0.41 TCGA-D9-A6EC-06 15 43738694 43738694 T G TP53BP1 Missense_Mutation p.K977N 0.37 deleterious(0.03) probably_damaging(0.986) TCGA-D9-A6EC-06 15 43924470 43924470 G T CATSPER2 Silent p.L496L 0.47 TCGA-D9-A6EC-06 15 45270718 45270718 C T C15orf43 Silent p.F185F 0.96 TCGA-D9-A6EC-06 15 45392248 45392248 A G DUOX2 Missense_Mutation p.Y1062H 0.13 tolerated(0.12) benign(0.023) TCGA-D9-A6EC-06 15 45433165 45433165 G A DUOX1 Missense_Mutation p.E488K 0.91 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 15 48539177 48539177 C T SLC12A1 Silent p.A508A 0.96 TCGA-D9-A6EC-06 15 48704769 48704769 G A FBN1 Silent p.I2741I 0.90 TCGA-D9-A6EC-06 15 49064691 49064691 T C CEP152 Missense_Mutation p.E592G 0.52 tolerated(0.07) benign(0.014) TCGA-D9-A6EC-06 15 50593567 50593567 T C GABPB1 Splice_Site p.X158_splice 0.52 TCGA-D9-A6EC-06 15 50774163 50774163 A C USP8 Silent p.V568V 0.95 TCGA-D9-A6EC-06 15 50774164 50774164 G A USP8 Missense_Mutation p.E569K 0.95 tolerated(0.21) benign(0.049) TCGA-D9-A6EC-06 15 50904928 50904928 A C TRPM7 Missense_Mutation p.N623K 0.21 deleterious(0) benign(0.042) TCGA-D9-A6EC-06 15 51514597 51514597 G A CYP19A1 Missense_Mutation p.R193C 0.42 tolerated(0.42) benign(0.001) TCGA-D9-A6EC-06 15 51791510 51791510 T G DMXL2 Missense_Mutation p.N1304T 0.18 tolerated(0.59) benign(0.002) TCGA-D9-A6EC-06 15 52903335 52903335 A C FAM214A Missense_Mutation p.I174M 0.45 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 15 53049680 53049680 A C ONECUT1 3'UTR 0.33 TCGA-D9-A6EC-06 15 54306622 54306622 G A UNC13C Missense_Mutation p.D508N 0.96 tolerated_low_confidence(0.33) benign(0.001) TCGA-D9-A6EC-06 15 54306828 54306828 C T UNC13C Silent p.S576S 0.89 TCGA-D9-A6EC-06 15 54307482 54307482 C T UNC13C Silent p.F794F 0.80 TCGA-D9-A6EC-06 15 56387612 56387612 T G RFX7 Missense_Mutation p.K772Q 0.21 tolerated_low_confidence(0.08) benign(0.432) TCGA-D9-A6EC-06 15 57918003 57918003 G A MYZAP Silent p.L146L 0.97 TCGA-D9-A6EC-06 15 59373248 59373248 C T RNF111 Missense_Mutation p.P688S 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-D9-A6EC-06 15 62167114 62167114 A G VPS13C Silent p.L3459L 0.91 TCGA-D9-A6EC-06 15 63950756 63950756 G A HERC1 Missense_Mutation p.L3196F 0.89 probably_damaging(0.997) TCGA-D9-A6EC-06 15 64686209 64686209 A C TRIP4 Missense_Mutation p.N56H 0.19 deleterious(0.03) possibly_damaging(0.498) TCGA-D9-A6EC-06 15 65667558 65667558 A C IGDCC3 Missense_Mutation p.L96V 0.38 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 15 66625571 66625571 A C DIS3L Missense_Mutation p.K1029T 0.37 deleterious(0.01) benign(0.244) TCGA-D9-A6EC-06 15 68631861 68631861 A C ITGA11 Missense_Mutation p.L418R 0.30 deleterious(0) probably_damaging(0.952) TCGA-D9-A6EC-06 15 69339850 69339850 C G NOX5 Missense_Mutation p.A597G 0.91 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 15 71535217 71535217 C T THSD4 Missense_Mutation p.R232C 0.41 tolerated(0.08) benign(0.28) TCGA-D9-A6EC-06 15 72502746 72502746 G A PKM Missense_Mutation p.P107L 0.90 deleterious(0.05) possibly_damaging(0.685) TCGA-D9-A6EC-06 15 73995191 73995191 C T CD276 Missense_Mutation p.S166F 0.92 tolerated(0.72) probably_damaging(0.99) TCGA-D9-A6EC-06 15 74631579 74631579 T G CYP11A1 Missense_Mutation p.K412T 0.44 deleterious(0.04) benign(0.207) TCGA-D9-A6EC-06 15 74710289 74710289 G A SEMA7A Missense_Mutation p.L132F 0.46 tolerated(0.28) possibly_damaging(0.777) TCGA-D9-A6EC-06 15 74883542 74883542 C T ARID3B Missense_Mutation p.S311F 0.88 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 15 75113082 75113082 A C LMAN1L Missense_Mutation p.K294T 0.39 tolerated(0.07) benign(0.017) TCGA-D9-A6EC-06 15 75311162 75311162 T C SCAMP5 Silent p.S182S 0.35 TCGA-D9-A6EC-06 15 75684939 75684939 G A SIN3A Missense_Mutation p.S832L 0.96 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 15 76518191 76518191 T C ETFA Missense_Mutation p.K321R 0.91 deleterious(0.01) benign(0.233) TCGA-D9-A6EC-06 15 77472886 77472886 A C PEAK1 Silent p.P461P 0.14 TCGA-D9-A6EC-06 15 78316821 78316821 T C TBC1D2B Missense_Mutation p.S383G 0.36 tolerated(0.12) benign(0.001) TCGA-D9-A6EC-06 15 78921776 78921776 C T CHRNB4 Missense_Mutation p.D291N 0.98 deleterious(0.04) benign(0.104) TCGA-D9-A6EC-06 15 79750541 79750541 T G KIAA1024 Silent p.S684S 0.43 TCGA-D9-A6EC-06 15 85164015 85164015 G A ZSCAN2 Missense_Mutation p.G197R 0.52 tolerated(0.78) benign(0.001) TCGA-D9-A6EC-06 15 85326873 85326873 C T ZNF592 Missense_Mutation p.P323S 0.29 deleterious(0.01) possibly_damaging(0.849) TCGA-D9-A6EC-06 15 85383963 85383963 C T ALPK3 Missense_Mutation p.P687S 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 15 85406016 85406016 A C ALPK3 Missense_Mutation p.K1629T 0.32 tolerated(0.06) probably_damaging(0.968) TCGA-D9-A6EC-06 15 85467334 85467334 C T SLC28A1 Missense_Mutation p.S359F 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EC-06 15 86077163 86077163 T G AKAP13 Intron 0.36 TCGA-D9-A6EC-06 15 89400119 89400119 G A ACAN Missense_Mutation p.G1435R 0.58 deleterious(0.01) possibly_damaging(0.566) TCGA-D9-A6EC-06 15 89400540 89400540 G A ACAN Missense_Mutation p.G1575D 0.28 tolerated(0.55) benign(0.062) TCGA-D9-A6EC-06 15 89745007 89745007 C T ABHD2 3'UTR 0.34 TCGA-D9-A6EC-06 15 89755010 89755010 C T RLBP1 Silent p.R216R 0.33 TCGA-D9-A6EC-06 15 89755011 89755011 C T RLBP1 Missense_Mutation p.R216Q 0.33 tolerated(0.23) benign(0.189) TCGA-D9-A6EC-06 15 90143840 90143840 A C TICRR Missense_Mutation p.S693R 0.30 tolerated(0.06) benign(0.142) TCGA-D9-A6EC-06 15 90340883 90340883 G A ANPEP Missense_Mutation p.P694S 0.27 deleterious(0) probably_damaging(0.944) TCGA-D9-A6EC-06 15 90784312 90784312 C T GDPGP1 Missense_Mutation p.P58S 0.65 deleterious(0.01) benign(0.066) TCGA-D9-A6EC-06 15 91420201 91420201 T C FURIN Missense_Mutation p.S150P 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-D9-A6EC-06 15 91434823 91434823 C T FES Missense_Mutation p.P524S 0.39 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 15 91449172 91449172 C T MAN2A2 Silent p.F211F 0.70 TCGA-D9-A6EC-06 15 91485796 91485796 A T UNC45A Nonsense_Mutation p.K273* 0.31 TCGA-D9-A6EC-06 15 91835652 91835652 G A SV2B Missense_Mutation p.G641E 0.29 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 15 93015412 93015412 G A C15orf32 Missense_Mutation p.E12K 0.32 tolerated_low_confidence(0.32) possibly_damaging(0.801) TCGA-D9-A6EC-06 15 94899472 94899472 G A MCTP2 Missense_Mutation p.G371E 0.30 tolerated(0.27) benign(0.051) TCGA-D9-A6EC-06 15 99478277 99478277 C T IGF1R Missense_Mutation p.H1061Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 15 99511774 99511774 C T PGPEP1L Missense_Mutation p.G175E 0.41 tolerated(0.81) benign(0.006) TCGA-D9-A6EC-06 16 10031883 10031883 G A GRIN2A Missense_Mutation p.P314S 0.37 deleterious(0.04) possibly_damaging(0.741) TCGA-D9-A6EC-06 16 10729739 10729739 T G TEKT5 Missense_Mutation p.M375L 0.09 tolerated(0.15) benign(0.002) TCGA-D9-A6EC-06 16 10788790 10788790 G A TEKT5 5'UTR 0.60 TCGA-D9-A6EC-06 16 11000803 11000803 G T CIITA Missense_Mutation p.S485I 0.46 tolerated(0.06) possibly_damaging(0.482) TCGA-D9-A6EC-06 16 1129770 1129770 C T SSTR5 Missense_Mutation p.P301L 0.70 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 16 1143884 1143884 C T C1QTNF8 Missense_Mutation p.G126S 0.25 tolerated(0.82) probably_damaging(0.999) TCGA-D9-A6EC-06 16 11876275 11876275 A C ZC3H7A 5'UTR 0.13 TCGA-D9-A6EC-06 16 11969761 11969761 T G GSPT1 Missense_Mutation p.K573T 0.14 deleterious(0.01) probably_damaging(0.967) TCGA-D9-A6EC-06 16 12142407 12142407 C T SNX29 Silent p.A226A 0.41 TCGA-D9-A6EC-06 16 1265529 1265529 A C CACNA1H Missense_Mutation p.K1727T 0.44 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 16 1271000 1271000 G A CACNA1H 3'UTR 0.36 TCGA-D9-A6EC-06 16 14342913 14342913 T G MKL2 Missense_Mutation p.L743R 0.33 deleterious(0.03) probably_damaging(0.936) TCGA-D9-A6EC-06 16 14704535 14704535 G A PARN Missense_Mutation p.P174S 0.58 tolerated(0.21) probably_damaging(0.971) TCGA-D9-A6EC-06 16 14960464 14960464 A C NOMO1 Missense_Mutation p.E574D 0.23 tolerated(0.25) benign(0.012) TCGA-D9-A6EC-06 16 15159163 15159163 A C RRN3 Missense_Mutation p.I540S 0.25 tolerated(0.06) probably_damaging(0.992) TCGA-D9-A6EC-06 16 15170402 15170402 A C RRN3 Intron 0.28 TCGA-D9-A6EC-06 16 15225120 15225120 T A RP11-1186N24.5 RNA 0.28 TCGA-D9-A6EC-06 16 1573646 1573646 G A IFT140 Missense_Mutation p.A1109V 0.26 tolerated(0.08) possibly_damaging(0.831) TCGA-D9-A6EC-06 16 16259623 16259623 C T ABCC6 Missense_Mutation p.V1055I 0.41 tolerated(1) benign(0.014) TCGA-D9-A6EC-06 16 16280978 16280978 C T ABCC6 Intron 0.50 TCGA-D9-A6EC-06 16 1793462 1793462 C T MAPK8IP3 Silent p.S243S 0.61 TCGA-D9-A6EC-06 16 1826214 1826214 A C EME2 Missense_Mutation p.D372A 0.20 deleterious(0) possibly_damaging(0.869) TCGA-D9-A6EC-06 16 1836547 1836547 A C NUBP2 Missense_Mutation p.N9T 0.18 tolerated(0.08) benign(0.037) TCGA-D9-A6EC-06 16 18597229 18597229 A G ABCC6P1 RNA 0.31 TCGA-D9-A6EC-06 16 19474656 19474656 T G TMC5 Missense_Mutation p.N401K 0.24 tolerated(0.1) benign(0.013) TCGA-D9-A6EC-06 16 19547459 19547459 T A CCP110 Silent p.T156T 0.27 TCGA-D9-A6EC-06 16 19548070 19548070 C T CCP110 Missense_Mutation p.S360L 0.36 deleterious(0.01) probably_damaging(0.978) TCGA-D9-A6EC-06 16 19883310 19883310 G A GPRC5B Silent p.F286F 0.37 TCGA-D9-A6EC-06 16 20043083 20043083 C T GPR139 Missense_Mutation p.G346R 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 16 20387442 20387442 T A PDILT Missense_Mutation p.Q164L 0.23 deleterious(0) possibly_damaging(0.649) TCGA-D9-A6EC-06 16 20476866 20476866 C T ACSM2A Silent p.L69L 0.55 TCGA-D9-A6EC-06 16 20488743 20488743 G A ACSM2A Missense_Mutation p.G384E 0.30 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 16 20489940 20489940 G A ACSM2A Missense_Mutation p.G408R 0.29 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 16 2049027 2049027 G A ZNF598 Missense_Mutation p.L717F 0.38 benign(0.006) TCGA-D9-A6EC-06 16 20551981 20551981 T C ACSM2B Missense_Mutation p.R542G 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 16 20576146 20576146 G A ACSM2B Nonsense_Mutation p.Q8* 0.37 TCGA-D9-A6EC-06 16 20648509 20648509 T A ACSM1 Intron 0.28 TCGA-D9-A6EC-06 16 20648554 20648554 G A ACSM1 Intron 0.32 TCGA-D9-A6EC-06 16 20807832 20807832 G A ERI2 3'UTR 0.38 TCGA-D9-A6EC-06 16 21215499 21215499 A G ZP2 Missense_Mutation p.L275P 0.27 deleterious(0) probably_damaging(0.967) TCGA-D9-A6EC-06 16 21636421 21636421 C T METTL9 Missense_Mutation p.P246S 0.59 deleterious(0.02) probably_damaging(0.99) TCGA-D9-A6EC-06 16 21663895 21663895 T C IGSF6 Missense_Mutation p.I9V 0.34 tolerated(0.5) benign(0.002) TCGA-D9-A6EC-06 16 22268969 22268969 C T EEF2K Missense_Mutation p.R303C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 16 22360657 22360657 T G CDR2 Missense_Mutation p.D150A 0.08 tolerated(0.09) benign(0.005) TCGA-D9-A6EC-06 16 2260822 2260822 T C BRICD5 Missense_Mutation p.S5G 0.31 tolerated_low_confidence(0.34) benign(0.051) TCGA-D9-A6EC-06 16 2286767 2286767 G A DNASE1L2 5'UTR 0.56 TCGA-D9-A6EC-06 16 22926895 22926895 G A HS3ST2 3'UTR 0.39 TCGA-D9-A6EC-06 16 23391951 23391951 C T SCNN1B Silent p.A584A 0.66 TCGA-D9-A6EC-06 16 2373498 2373498 A C ABCA3 Intron 0.28 TCGA-D9-A6EC-06 16 23999861 23999861 G A PRKCB Missense_Mutation p.E80K 0.29 tolerated(0.07) possibly_damaging(0.714) TCGA-D9-A6EC-06 16 24183665 24183665 C T PRKCB Silent p.F438F 0.25 TCGA-D9-A6EC-06 16 24183669 24183669 G A PRKCB Missense_Mutation p.E440K 0.67 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 16 24268122 24268122 G A CACNG3 Missense_Mutation p.G16E 0.52 deleterious(0.03) probably_damaging(1) TCGA-D9-A6EC-06 16 24583244 24583244 T G RBBP6 Missense_Mutation p.S1619R 0.07 deleterious_low_confidence(0) unknown(0) TCGA-D9-A6EC-06 16 24950850 24950850 G A ARHGAP17 Missense_Mutation p.S520F 0.80 deleterious(0) possibly_damaging(0.702) TCGA-D9-A6EC-06 16 2511004 2511004 A G C16orf59 Silent p.Q128Q 0.29 TCGA-D9-A6EC-06 16 2512522 2512522 C T C16orf59 Missense_Mutation p.S286L 0.75 deleterious(0.02) benign(0.011) TCGA-D9-A6EC-06 16 25251334 25251334 G A ZKSCAN2 Nonsense_Mutation p.R903* 0.81 TCGA-D9-A6EC-06 16 2550412 2550412 C T TBC1D24 Silent p.F482F 0.27 TCGA-D9-A6EC-06 16 27761150 27761150 T C KIAA0556 Missense_Mutation p.S957P 0.26 tolerated(0.14) benign(0.02) TCGA-D9-A6EC-06 16 2815409 2815409 C T SRRM2 Missense_Mutation p.P1627L 0.29 unknown(0) TCGA-D9-A6EC-06 16 2819075 2819075 A C SRRM2 Missense_Mutation p.K2604T 0.20 probably_damaging(0.954) TCGA-D9-A6EC-06 16 28507751 28507751 A T APOBR Silent p.V463V 0.27 TCGA-D9-A6EC-06 16 28597020 28597020 C T CCDC101 Missense_Mutation p.A68V 0.31 tolerated(0.17) benign(0.367) TCGA-D9-A6EC-06 16 2871007 2871007 A C PRSS21 Missense_Mutation p.N201T 0.24 tolerated(0.85) benign(0.101) TCGA-D9-A6EC-06 16 28898776 28898776 G A ATP2A1 Missense_Mutation p.G221S 0.29 tolerated(0.08) probably_damaging(1) TCGA-D9-A6EC-06 16 28898777 28898777 G A ATP2A1 Missense_Mutation p.G221D 0.29 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 16 28898814 28898814 G A ATP2A1 Silent p.G233G 0.20 TCGA-D9-A6EC-06 16 28917075 28917075 G A RABEP2 Silent p.L481L 0.70 TCGA-D9-A6EC-06 16 28917076 28917076 G A RABEP2 Silent p.S480S 0.71 TCGA-D9-A6EC-06 16 28993231 28993231 C T SPNS1 Silent p.F273F 0.29 TCGA-D9-A6EC-06 16 28997747 28997747 C T LAT Missense_Mutation p.S133F 0.61 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-D9-A6EC-06 16 2903314 2903314 G A PRSS22 Missense_Mutation p.P245L 0.60 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 16 2979865 2979865 A G FLYWCH1 Missense_Mutation p.Q60R 0.18 tolerated_low_confidence(0.22) benign(0.002) TCGA-D9-A6EC-06 16 29906609 29906609 C T SEZ6L2 Missense_Mutation p.R275K 0.59 tolerated(0.92) benign(0.296) TCGA-D9-A6EC-06 16 29998325 29998325 T G TAOK2 Missense_Mutation p.I911S 0.18 deleterious_low_confidence(0.05) benign(0.008) TCGA-D9-A6EC-06 16 29998479 29998479 C T TAOK2 Silent p.S962S 0.60 TCGA-D9-A6EC-06 16 30035349 30035349 C T C16orf92 Silent p.L107L 0.28 TCGA-D9-A6EC-06 16 30744600 30744600 G A SRCAP Splice_Site p.X2043_splice 0.25 TCGA-D9-A6EC-06 16 31004745 31004745 C T STX1B Missense_Mutation p.E200K 0.69 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EC-06 16 31008832 31008832 G T STX1B Silent p.R115R 0.33 TCGA-D9-A6EC-06 16 31087780 31087780 T C ZNF646 Silent p.P45P 0.07 TCGA-D9-A6EC-06 16 31097483 31097483 G A PRSS53 Silent p.L229L 0.52 TCGA-D9-A6EC-06 16 31105715 31105715 G A VKORC1 Intron 0.20 TCGA-D9-A6EC-06 16 3115819 3115819 T G IL32 Missense_Mutation p.F3V 0.30 deleterious(0.01) possibly_damaging(0.634) TCGA-D9-A6EC-06 16 31230829 31230829 G T TRIM72 Nonsense_Mutation p.E236* 0.34 TCGA-D9-A6EC-06 16 31383782 31383782 C T ITGAX Silent p.N748N 0.68 TCGA-D9-A6EC-06 16 31391140 31391140 G A ITGAX Silent p.L977L 0.29 TCGA-D9-A6EC-06 16 3140162 3140162 T C ZSCAN10 Missense_Mutation p.T370A 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A6EC-06 16 31421727 31421727 C T ITGAD Silent p.F365F 0.35 TCGA-D9-A6EC-06 16 31422501 31422501 A T ITGAD Silent p.R487R 0.19 TCGA-D9-A6EC-06 16 31437407 31437407 G A ITGAD Silent p.G1148G 0.17 TCGA-D9-A6EC-06 16 31477589 31477589 C T ARMC5 Silent p.D729D 0.15 TCGA-D9-A6EC-06 16 31485738 31485738 C T TGFB1I1 Silent p.L161L 0.39 TCGA-D9-A6EC-06 16 31488840 31488840 C T TGFB1I1 Silent p.F443F 0.38 TCGA-D9-A6EC-06 16 31926038 31926038 T C ZNF267 Silent p.C156C 0.11 TCGA-D9-A6EC-06 16 3304571 3304571 G A MEFV Missense_Mutation p.S166L 0.58 tolerated(0.14) benign(0.001) TCGA-D9-A6EC-06 16 334672 334672 T C PDIA2 Silent p.A140A 0.27 TCGA-D9-A6EC-06 16 33647308 33647308 G A RP11-812E19.9 Missense_Mutation p.P98S 0.95 deleterious_low_confidence(0) benign(0.002) TCGA-D9-A6EC-06 16 3486418 3486422 TTTAC - ZNF597 3'UTR 0.80 TCGA-D9-A6EC-06 16 3487437 3487437 G A ZNF597 Missense_Mutation p.P88S 0.36 tolerated(0.4) benign(0.002) TCGA-D9-A6EC-06 16 3640281 3640281 T G SLX4 Missense_Mutation p.K1120Q 0.33 deleterious(0.01) possibly_damaging(0.472) TCGA-D9-A6EC-06 16 3656630 3656630 T G SLX4 Missense_Mutation p.K202T 0.08 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 16 4024697 4024697 G A ADCY9 Missense_Mutation p.S948L 0.40 tolerated(0.08) benign(0) TCGA-D9-A6EC-06 16 4492304 4492304 G A DNAJA3 Silent p.K222K 0.53 TCGA-D9-A6EC-06 16 4751074 4751074 T C ANKS3 Missense_Mutation p.K394R 0.06 tolerated(0.29) probably_damaging(0.997) TCGA-D9-A6EC-06 16 48149508 48149508 G A ABCC12 Missense_Mutation p.L603F 1.00 deleterious(0.01) probably_damaging(0.93) TCGA-D9-A6EC-06 16 4960939 4960939 T G PPL Missense_Mutation p.K25T 0.23 tolerated(0.28) benign(0.061) TCGA-D9-A6EC-06 16 50733668 50733668 C T NOD2 Nonsense_Mutation p.Q115* 0.58 TCGA-D9-A6EC-06 16 51173229 51173229 C T SALL1 Silent p.G968G 0.95 TCGA-D9-A6EC-06 16 51173496 51173496 C T SALL1 Silent p.E879E 0.43 TCGA-D9-A6EC-06 16 51174110 51174110 G A SALL1 Missense_Mutation p.P675S 0.95 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 16 53691512 53691512 G A RPGRIP1L Silent p.S478S 0.82 TCGA-D9-A6EC-06 16 56532359 56532359 A T BBS2 Missense_Mutation p.L550H 0.42 tolerated(0.14) benign(0.286) TCGA-D9-A6EC-06 16 56533809 56533809 G A BBS2 Missense_Mutation p.H470Y 0.96 deleterious(0.02) benign(0.238) TCGA-D9-A6EC-06 16 56918116 56918116 G A SLC12A3 Missense_Mutation p.E609K 0.81 tolerated(0.12) benign(0.005) TCGA-D9-A6EC-06 16 56977309 56977309 A G HERPUD1 3'UTR 0.67 TCGA-D9-A6EC-06 16 57060142 57060142 G A NLRC5 Silent p.V429V 0.95 TCGA-D9-A6EC-06 16 57060143 57060143 G A NLRC5 Missense_Mutation p.A430T 0.95 tolerated(0.14) benign(0.11) TCGA-D9-A6EC-06 16 57073746 57073746 A C NLRC5 Missense_Mutation p.K952T 0.08 tolerated(0.16) benign(0.017) TCGA-D9-A6EC-06 16 57238585 57238585 T G RSPRY1 Silent p.G5G 0.38 TCGA-D9-A6EC-06 16 57416409 57416409 C T CX3CL1 Missense_Mutation p.S220F 0.88 deleterious(0) possibly_damaging(0.87) TCGA-D9-A6EC-06 16 58018240 58018240 G A TEPP Missense_Mutation p.G141E 0.82 tolerated(0.12) possibly_damaging(0.821) TCGA-D9-A6EC-06 16 58018241 58018241 G A TEPP Silent p.G141G 0.82 TCGA-D9-A6EC-06 16 58320062 58320062 C T PRSS54 Missense_Mutation p.D101N 0.83 tolerated(0.36) benign(0.083) TCGA-D9-A6EC-06 16 624163 624163 C T PIGQ Missense_Mutation p.A30V 0.74 tolerated_low_confidence(0.2) probably_damaging(0.993) TCGA-D9-A6EC-06 16 65006922 65006922 A G CDH11 Silent p.T425T 0.42 TCGA-D9-A6EC-06 16 66918415 66918415 A C PDP2 Missense_Mutation p.Q76H 0.33 tolerated(0.13) benign(0.008) TCGA-D9-A6EC-06 16 67315029 67315029 T G PLEKHG4 Missense_Mutation p.V252G 0.27 deleterious(0) possibly_damaging(0.701) TCGA-D9-A6EC-06 16 67323508 67323508 A T KCTD19 Silent p.S915S 0.09 TCGA-D9-A6EC-06 16 67327493 67327493 T C KCTD19 Silent p.R724R 0.09 TCGA-D9-A6EC-06 16 67694198 67694198 G A ACD Missense_Mutation p.L62F 0.91 tolerated_low_confidence(0.2) possibly_damaging(0.86) TCGA-D9-A6EC-06 16 67991875 67991875 G A SLC12A4 Silent p.L141L 0.94 TCGA-D9-A6EC-06 16 67991876 67991876 G A SLC12A4 Silent p.F140F 0.95 TCGA-D9-A6EC-06 16 68289709 68289709 C T PLA2G15 Silent p.I181I 0.90 TCGA-D9-A6EC-06 16 68382243 68382243 A G PRMT7 Splice_Site p.X442_splice 0.27 TCGA-D9-A6EC-06 16 69148368 69148368 G A HAS3 Silent p.L287L 0.88 TCGA-D9-A6EC-06 16 69184790 69184790 A T CIRH1A Nonsense_Mutation p.K329* 0.36 TCGA-D9-A6EC-06 16 70508220 70508220 G A FUK Missense_Mutation p.E656K 0.91 deleterious(0.04) benign(0.441) TCGA-D9-A6EC-06 16 70508745 70508745 G A FUK Silent p.L736L 0.90 TCGA-D9-A6EC-06 16 70508746 70508746 G A FUK Missense_Mutation p.G737S 0.90 tolerated(0.15) benign(0.165) TCGA-D9-A6EC-06 16 70557456 70557456 C T COG4 5'UTR 0.65 TCGA-D9-A6EC-06 16 70595619 70595619 A C SF3B3 Missense_Mutation p.E740D 0.28 tolerated(0.41) benign(0.162) TCGA-D9-A6EC-06 16 70710827 70710827 A G MTSS1L Missense_Mutation p.S263P 0.31 deleterious(0) benign(0.009) TCGA-D9-A6EC-06 16 70815908 70815908 T C VAC14 Splice_Site p.X271_splice 0.13 TCGA-D9-A6EC-06 16 70954600 70954600 T G HYDIN Missense_Mutation p.K2560T 0.44 benign(0.016) TCGA-D9-A6EC-06 16 71101130 71101130 G A HYDIN Intron 0.91 TCGA-D9-A6EC-06 16 71209534 71209534 G A HYDIN Silent p.I164I 0.29 TCGA-D9-A6EC-06 16 71668596 71668596 T C MARVELD3 Intron 0.51 TCGA-D9-A6EC-06 16 71748507 71748507 G A PHLPP2 Silent p.L64L 0.88 TCGA-D9-A6EC-06 16 72110755 72110755 C T HPR Silent p.P274P 0.96 TCGA-D9-A6EC-06 16 72829321 72829321 A G ZFHX3 Silent p.N2420N 0.94 TCGA-D9-A6EC-06 16 72831647 72831647 A C ZFHX3 Missense_Mutation p.I1645S 0.38 benign(0.002) TCGA-D9-A6EC-06 16 74336181 74336181 A C PSMD7 Missense_Mutation p.E143D 0.31 tolerated(0.06) benign(0.014) TCGA-D9-A6EC-06 16 75481427 75481427 A C TMEM170A 3'UTR 0.39 TCGA-D9-A6EC-06 16 7568158 7568158 G A RBFOX1 Missense_Mutation p.E33K 0.45 deleterious(0) benign(0.23) TCGA-D9-A6EC-06 16 76486596 76486596 C T CNTNAP4 Silent p.L348L 0.96 TCGA-D9-A6EC-06 16 772984 772984 C T CCDC78 Missense_Mutation p.G412E 0.29 tolerated(0.05) probably_damaging(0.999) TCGA-D9-A6EC-06 16 77353904 77353904 G A ADAMTS18 Nonsense_Mutation p.R792* 0.85 TCGA-D9-A6EC-06 16 77396065 77396065 G A ADAMTS18 Missense_Mutation p.H385Y 0.95 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 16 78064767 78064767 G A CLEC3A 3'UTR 0.91 TCGA-D9-A6EC-06 16 81095012 81095012 G A C16orf46 Silent p.D314D 0.94 TCGA-D9-A6EC-06 16 81095312 81095312 C T C16orf46 Silent p.L214L 0.91 TCGA-D9-A6EC-06 16 81097435 81097435 A C C16orf46 Nonsense_Mutation p.Y42* 0.33 TCGA-D9-A6EC-06 16 815780 815780 G A MSLN Silent p.R295R 0.52 TCGA-D9-A6EC-06 16 818773 818773 C T MSLN 3'UTR 0.31 TCGA-D9-A6EC-06 16 82033450 82033450 C T SDR42E1 Missense_Mutation p.D150N 0.90 tolerated(0.06) probably_damaging(1) TCGA-D9-A6EC-06 16 82069032 82069032 G A HSD17B2 Translation_Start_Site p.M1? 0.96 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 16 82069201 82069201 T C HSD17B2 Silent p.L58L 0.88 TCGA-D9-A6EC-06 16 83711867 83711867 G A CDH13 Missense_Mutation p.E494K 0.90 deleterious(0.03) probably_damaging(0.997) TCGA-D9-A6EC-06 16 84050230 84050230 G A SLC38A8 Silent p.I352I 0.89 TCGA-D9-A6EC-06 16 84129221 84129221 T C MBTPS1 Missense_Mutation p.Q204R 0.50 tolerated(0.52) benign(0.005) TCGA-D9-A6EC-06 16 84520383 84520383 G A TLDC1 Missense_Mutation p.S271L 0.85 deleterious(0) possibly_damaging(0.701) TCGA-D9-A6EC-06 16 89346524 89346524 G A ANKRD11 Silent p.P2142P 0.38 TCGA-D9-A6EC-06 16 89735727 89735727 A C SPATA33 Missense_Mutation p.K81T 0.39 deleterious(0) possibly_damaging(0.709) TCGA-D9-A6EC-06 16 90020775 90020775 A G DEF8 Missense_Mutation p.T100A 0.31 tolerated(0.53) benign(0.001) TCGA-D9-A6EC-06 16 90128438 90128438 A T PRDM7 Missense_Mutation p.L258H 0.21 deleterious(0.01) probably_damaging(0.956) TCGA-D9-A6EC-06 16 9196899 9196899 A G C16orf72 Silent p.R122R 0.16 TCGA-D9-A6EC-06 16 9197094 9197094 C T C16orf72 Silent p.F187F 0.37 TCGA-D9-A6EC-06 16 9857127 9857127 G A GRIN2A Missense_Mutation p.S1425L 0.48 tolerated(0.13) benign(0.224) TCGA-D9-A6EC-06 16 9916128 9916128 T G GRIN2A Missense_Mutation p.K721Q 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A6EC-06 17 10206740 10206740 C T MYH13 Missense_Mutation p.E1848K 0.93 deleterious(0) benign(0.298) TCGA-D9-A6EC-06 17 10210311 10210311 T A MYH13 Missense_Mutation p.N1747I 0.45 deleterious(0) benign(0.15) TCGA-D9-A6EC-06 17 10212677 10212677 C T MYH13 Silent p.R1681R 0.47 TCGA-D9-A6EC-06 17 10212934 10212934 C T MYH13 Missense_Mutation p.G1624R 0.57 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 17 10222114 10222114 T G MYH13 Missense_Mutation p.K1244T 0.16 deleterious(0) possibly_damaging(0.898) TCGA-D9-A6EC-06 17 10267747 10267747 G A MYH13 Missense_Mutation p.S34F 0.28 deleterious(0.01) benign(0.265) TCGA-D9-A6EC-06 17 10297722 10297722 G A MYH8 Silent p.L1670L 0.52 TCGA-D9-A6EC-06 17 10355623 10355623 C T MYH4 Missense_Mutation p.E1125K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 17 10360946 10360946 G A MYH4 Missense_Mutation p.S563F 0.40 deleterious(0) possibly_damaging(0.733) TCGA-D9-A6EC-06 17 10409344 10409344 C T MYH1 Missense_Mutation p.E681K 0.92 deleterious(0.01) possibly_damaging(0.812) TCGA-D9-A6EC-06 17 10432177 10432177 C T MYH2 Missense_Mutation p.E1192K 0.94 deleterious(0.01) possibly_damaging(0.571) TCGA-D9-A6EC-06 17 10442573 10442573 G A MYH2 Silent p.P455P 0.48 TCGA-D9-A6EC-06 17 10442859 10442859 G C MYH2 Missense_Mutation p.L390V 0.96 deleterious(0) benign(0.327) TCGA-D9-A6EC-06 17 10538757 10538757 T C MYH3 Missense_Mutation p.S1367G 0.23 tolerated(0.18) benign(0.001) TCGA-D9-A6EC-06 17 10542374 10542374 C T MYH3 Missense_Mutation p.E1079K 0.94 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 17 10542496 10542496 G A MYH3 Missense_Mutation p.S1038F 0.93 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 17 10544628 10544628 A T MYH3 Missense_Mutation p.I674K 0.96 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 11725838 11725838 C T DNAH9 Silent p.I2978I 0.93 TCGA-D9-A6EC-06 17 1183547 1183547 G A TUSC5 Silent p.R84R 0.98 TCGA-D9-A6EC-06 17 11845685 11845685 G A DNAH9 Missense_Mutation p.M4242I 0.94 benign(0.009) TCGA-D9-A6EC-06 17 12656322 12656322 G A MYOCD Missense_Mutation p.E573K 0.21 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 17 12666654 12666654 G A MYOCD Missense_Mutation p.G885E 0.94 tolerated(0.16) benign(0.17) TCGA-D9-A6EC-06 17 12666917 12666917 C T MYOCD Missense_Mutation p.L973F 0.92 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 13400096 13400096 C T HS3ST3A1 Missense_Mutation p.M213I 0.92 tolerated(0.11) benign(0.012) TCGA-D9-A6EC-06 17 1384026 1384026 G A MYO1C Missense_Mutation p.P261S 0.98 tolerated(0.39) benign(0.057) TCGA-D9-A6EC-06 17 1411451 1411451 G A INPP5K Silent p.S208S 0.21 TCGA-D9-A6EC-06 17 1411452 1411452 G A INPP5K Missense_Mutation p.S208F 0.21 deleterious(0) possibly_damaging(0.83) TCGA-D9-A6EC-06 17 14248405 14248405 C T HS3ST3B1 Silent p.F205F 0.94 TCGA-D9-A6EC-06 17 1538796 1538796 A G SCARF1 Silent p.A583A 0.15 TCGA-D9-A6EC-06 17 15643441 15643441 G A TBC1D26 Silent p.V175V 0.92 TCGA-D9-A6EC-06 17 1581861 1581861 A C PRPF8 Missense_Mutation p.I602S 0.15 deleterious(0) possibly_damaging(0.51) TCGA-D9-A6EC-06 17 15884443 15884443 T G ZSWIM7 Missense_Mutation p.S73R 0.18 tolerated(0.12) benign(0.026) TCGA-D9-A6EC-06 17 15960897 15960897 T C NCOR1 Missense_Mutation p.Q2108R 0.15 possibly_damaging(0.675) TCGA-D9-A6EC-06 17 16220024 16220024 A C PIGL Missense_Mutation p.K175T 0.12 tolerated(0.1) benign(0.01) TCGA-D9-A6EC-06 17 1657455 1657455 T C SERPINF2 Missense_Mutation p.I368T 0.11 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 16735625 16735625 C T KRT16P2 RNA 0.41 TCGA-D9-A6EC-06 17 17049365 17049365 T A MPRIP Missense_Mutation p.F389I 0.28 deleterious(0) possibly_damaging(0.549) TCGA-D9-A6EC-06 17 17766155 17766155 C T TOM1L2 Silent p.G364G 0.95 TCGA-D9-A6EC-06 17 18138461 18138461 C T LLGL1 Silent p.D373D 0.49 TCGA-D9-A6EC-06 17 18138462 18138462 C T LLGL1 Silent p.L374L 0.47 TCGA-D9-A6EC-06 17 18167643 18167643 C T MIEF2 Silent p.V321V 0.51 TCGA-D9-A6EC-06 17 1840637 1840637 T C RTN4RL1 Missense_Mutation p.H160R 0.13 tolerated(0.15) possibly_damaging(0.842) TCGA-D9-A6EC-06 17 18638790 18638790 C T TRIM16L 3'UTR 0.88 TCGA-D9-A6EC-06 17 18653435 18653435 G A FBXW10 Silent p.Q328Q 0.59 TCGA-D9-A6EC-06 17 19611757 19611757 G A SLC47A2 Missense_Mutation p.P199S 0.42 tolerated_low_confidence(0.4) benign(0) TCGA-D9-A6EC-06 17 20000019 20000019 C T SPECC1 Missense_Mutation p.P19S 0.94 tolerated(0.86) benign(0.002) TCGA-D9-A6EC-06 17 20149278 20149278 T C SPECC1 Silent p.A797A 0.09 TCGA-D9-A6EC-06 17 20407340 20407340 A G RP11-434D2.7 3'Flank 0.15 TCGA-D9-A6EC-06 17 21094517 21094517 T G DHRS7B 3'UTR 0.22 TCGA-D9-A6EC-06 17 21204199 21204199 C T MAP2K3 Missense_Mutation p.T98I 0.26 deleterious(0) probably_damaging(0.962) TCGA-D9-A6EC-06 17 21318786 21318786 C T KCNJ12 Silent p.N44N 0.15 TCGA-D9-A6EC-06 17 21318792 21318792 C T KCNJ12 Silent p.F46F 0.37 TCGA-D9-A6EC-06 17 21825484 21825484 G A FAM27L RNA 0.27 TCGA-D9-A6EC-06 17 25749093 25749093 C T TBC1D3P5 RNA 1.00 TCGA-D9-A6EC-06 17 26092606 26092606 G A NOS2 Missense_Mutation p.P795S 0.08 deleterious(0.01) benign(0.362) TCGA-D9-A6EC-06 17 26115953 26115953 G A NOS2 Missense_Mutation p.S67F 0.42 deleterious(0.04) benign(0.005) TCGA-D9-A6EC-06 17 26687576 26687576 A G TMEM199 Missense_Mutation p.S134G 0.08 tolerated(0.19) benign(0.009) TCGA-D9-A6EC-06 17 26691945 26691945 T C VTN 3'Flank 0.15 TCGA-D9-A6EC-06 17 26694950 26694950 C T CTB-96E2.2 Silent p.R28R 0.27 TCGA-D9-A6EC-06 17 26694951 26694951 C T CTB-96E2.2 Missense_Mutation p.R28K 0.25 tolerated(1) benign(0) TCGA-D9-A6EC-06 17 26850961 26850961 G A FOXN1 5'UTR 0.89 TCGA-D9-A6EC-06 17 26960991 26960991 A G KIAA0100 Silent p.L1062L 0.20 TCGA-D9-A6EC-06 17 27284395 27284395 T C SEZ6 Missense_Mutation p.K822R 0.26 tolerated(0.39) possibly_damaging(0.649) TCGA-D9-A6EC-06 17 27425379 27425379 T C MYO18A Missense_Mutation p.S1289G 0.26 deleterious(0.04) benign(0.006) TCGA-D9-A6EC-06 17 28548726 28548726 T C SLC6A4 Missense_Mutation p.K84R 0.29 tolerated(0.07) probably_damaging(1) TCGA-D9-A6EC-06 17 28811246 28811246 C T GOSR1 Missense_Mutation p.P56L 0.87 deleterious(0) benign(0.126) TCGA-D9-A6EC-06 17 28886563 28886563 G A TBC1D29 5'UTR 0.91 TCGA-D9-A6EC-06 17 293168 293168 C T FAM101B Silent p.T74T 0.08 TCGA-D9-A6EC-06 17 29527482 29527482 G T NF1 Nonsense_Mutation p.G311* 0.88 TCGA-D9-A6EC-06 17 30219326 30219326 A G UTP6 Missense_Mutation p.L126P 0.33 deleterious(0) probably_damaging(0.954) TCGA-D9-A6EC-06 17 3030612 3030612 G A OR1G1 Silent p.V78V 0.92 TCGA-D9-A6EC-06 17 30687933 30687933 T C ZNF207 Silent p.G166G 0.12 TCGA-D9-A6EC-06 17 30687944 30687944 T G ZNF207 Missense_Mutation p.L170R 0.10 tolerated(0.36) possibly_damaging(0.883) TCGA-D9-A6EC-06 17 30815450 30815450 A T CDK5R1 Missense_Mutation p.K271M 0.09 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 17 31343037 31343037 T C ASIC2 Silent p.L514L 0.28 TCGA-D9-A6EC-06 17 32597279 32597279 C T CCL7 5'UTR 0.29 TCGA-D9-A6EC-06 17 33317986 33317986 T G LIG3 Silent p.G298G 0.11 TCGA-D9-A6EC-06 17 33513541 33513541 A C UNC45B Missense_Mutation p.K920T 0.08 deleterious(0.02) benign(0.322) TCGA-D9-A6EC-06 17 33680062 33680062 G A SLFN11 Silent p.F673F 0.94 TCGA-D9-A6EC-06 17 33749181 33749181 G A SLFN12 Silent p.F289F 0.31 TCGA-D9-A6EC-06 17 33806606 33806606 A C SLFN12L Missense_Mutation p.L208R 0.37 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 17 34072453 34072453 C T GAS2L2 Missense_Mutation p.G688E 0.93 tolerated(0.09) benign(0.339) TCGA-D9-A6EC-06 17 34149772 34149772 A G TAF15 Missense_Mutation p.D140G 0.34 tolerated_low_confidence(0.26) benign(0.064) TCGA-D9-A6EC-06 17 34190081 34190081 T C C17orf66 Missense_Mutation p.E225G 0.88 tolerated(0.98) benign(0.001) TCGA-D9-A6EC-06 17 34234257 34234257 A G AC015849.16 RNA 0.30 TCGA-D9-A6EC-06 17 34263819 34263819 A C LYZL6 Missense_Mutation p.L106R 0.12 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 17 3445953 3445953 T G TRPV3 Missense_Mutation p.K169T 0.25 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 17 3446912 3446912 C T TRPV3 Missense_Mutation p.A108T 0.41 tolerated(0.15) benign(0.005) TCGA-D9-A6EC-06 17 3543546 3543546 C T CTNS Missense_Mutation p.L16F 0.12 tolerated(0.14) benign(0.014) TCGA-D9-A6EC-06 17 3543547 3543547 T C CTNS Missense_Mutation p.L16P 0.12 deleterious(0.02) possibly_damaging(0.865) TCGA-D9-A6EC-06 17 35620618 35620618 A G ACACA Silent p.A433A 0.08 TCGA-D9-A6EC-06 17 35879046 35879046 G A SYNRG Silent p.L1314L 0.23 TCGA-D9-A6EC-06 17 35902459 35902459 G A SYNRG Silent p.I939I 0.99 TCGA-D9-A6EC-06 17 36357239 36357239 G A RP11-1407O15.2 Silent p.S338S 0.10 TCGA-D9-A6EC-06 17 36357240 36357240 G A RP11-1407O15.2 Missense_Mutation p.S338F 0.11 TCGA-D9-A6EC-06 17 3638147 3638147 A C ITGAE Missense_Mutation p.N873K 0.06 tolerated(0.21) benign(0.057) TCGA-D9-A6EC-06 17 36482513 36482513 T G GPR179 Missense_Mutation p.Q2313H 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.906) TCGA-D9-A6EC-06 17 3653727 3653727 G A ITGAE Missense_Mutation p.S648F 0.30 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EC-06 17 3660346 3660346 T A ITGAE Missense_Mutation p.K368M 0.29 deleterious(0.02) possibly_damaging(0.669) TCGA-D9-A6EC-06 17 36896631 36896631 T G PCGF2 Missense_Mutation p.I9L 0.10 tolerated(0.31) benign(0.145) TCGA-D9-A6EC-06 17 37566573 37566573 G A MED1 Missense_Mutation p.S634L 0.90 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-D9-A6EC-06 17 37584041 37584041 G A MED1 Missense_Mutation p.H218Y 1.00 tolerated(0.11) possibly_damaging(0.883) TCGA-D9-A6EC-06 17 37900842 37900842 G A GRB7 Missense_Mutation p.E303K 0.80 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 17 38340514 38340514 G A RAPGEFL1 Silent p.K10K 0.62 TCGA-D9-A6EC-06 17 38346709 38346709 G A RAPGEFL1 Missense_Mutation p.E174K 0.28 deleterious(0.01) benign(0.038) TCGA-D9-A6EC-06 17 38447811 38447811 A C CDC6 Missense_Mutation p.N184T 0.17 tolerated(0.3) benign(0.001) TCGA-D9-A6EC-06 17 38652320 38652320 G A TNS4 Missense_Mutation p.P120S 0.93 tolerated(0.2) probably_damaging(0.999) TCGA-D9-A6EC-06 17 38813686 38813686 C T KRT222 Missense_Mutation p.E193K 0.88 tolerated(0.08) benign(0.007) TCGA-D9-A6EC-06 17 39140094 39140094 T G KRT40 Missense_Mutation p.E144D 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EC-06 17 39183033 39183033 C T KRTAP1-5 Silent p.V125V 0.60 TCGA-D9-A6EC-06 17 39254197 39254197 G A KRTAP4-8 Missense_Mutation p.S47F 0.27 deleterious(0.02) unknown(0) TCGA-D9-A6EC-06 17 39471604 39471604 G A KRTAP17-1 Missense_Mutation p.P100L 0.96 unknown(0) TCGA-D9-A6EC-06 17 39525810 39525810 C T KRT33B Missense_Mutation p.D65N 0.29 tolerated(0.11) benign(0.179) TCGA-D9-A6EC-06 17 39550175 39550175 G A KRT31 3'UTR 0.92 TCGA-D9-A6EC-06 17 39636955 39636955 C T KRT35 Nonsense_Mutation p.W132* 0.57 TCGA-D9-A6EC-06 17 39642586 39642586 T G KRT36 3'UTR 0.21 TCGA-D9-A6EC-06 17 3967831 3967831 T G ZZEF1 Missense_Mutation p.E1514D 0.34 tolerated(0.19) benign(0.008) TCGA-D9-A6EC-06 17 39767896 39767896 C T KRT16 Silent p.R203R 0.93 TCGA-D9-A6EC-06 17 39767955 39767955 C T KRT16 Missense_Mutation p.E184K 0.93 deleterious(0.04) possibly_damaging(0.507) TCGA-D9-A6EC-06 17 39845214 39845214 C T EIF1 5'UTR 0.95 TCGA-D9-A6EC-06 17 40043923 40043923 G A ACLY Missense_Mutation p.P602S 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 17 40620085 40620085 A G ATP6V0A1 Missense_Mutation p.N85S 0.33 tolerated(0.65) probably_damaging(0.999) TCGA-D9-A6EC-06 17 40716590 40716590 C T COASY Missense_Mutation p.P377S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 17 40716591 40716591 C T COASY Missense_Mutation p.P377L 0.26 tolerated(0.14) probably_damaging(1) TCGA-D9-A6EC-06 17 40870515 40870515 T C EZH1 Silent p.T296T 0.14 TCGA-D9-A6EC-06 17 41002292 41002292 A C AOC2 Missense_Mutation p.N733T 0.22 deleterious(0) possibly_damaging(0.746) TCGA-D9-A6EC-06 17 41004861 41004861 T G AOC3 Missense_Mutation p.F501V 0.11 tolerated(0.29) probably_damaging(0.971) TCGA-D9-A6EC-06 17 41243652 41243652 T A BRCA1 Missense_Mutation p.Q1299L 0.08 deleterious(0) possibly_damaging(0.756) TCGA-D9-A6EC-06 17 41246743 41246743 A C BRCA1 Missense_Mutation p.L269V 0.25 tolerated(0.2) probably_damaging(0.911) TCGA-D9-A6EC-06 17 42255003 42255003 T G ASB16 Silent p.P363P 0.18 TCGA-D9-A6EC-06 17 42286793 42286793 T G UBTF Missense_Mutation p.Q611P 0.09 deleterious(0.01) probably_damaging(0.962) TCGA-D9-A6EC-06 17 42397451 42397451 G A SLC25A39 Missense_Mutation p.S333F 0.96 deleterious(0) probably_damaging(0.972) TCGA-D9-A6EC-06 17 42455745 42455745 G A ITGA2B Silent p.A693A 0.68 TCGA-D9-A6EC-06 17 42476094 42476094 A C GPATCH8 Missense_Mutation p.N1117K 0.07 deleterious(0.02) unknown(0) TCGA-D9-A6EC-06 17 42942373 42942373 T C EFTUD2 Missense_Mutation p.T404A 0.32 tolerated(0.06) benign(0.089) TCGA-D9-A6EC-06 17 43323053 43323053 C T FMNL1 Missense_Mutation p.P983S 0.88 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 4356424 4356424 C T SPNS3 Missense_Mutation p.A346V 0.22 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 17 43924127 43924127 C T SPPL2C Missense_Mutation p.P619S 0.90 tolerated_low_confidence(0.33) benign(0.01) TCGA-D9-A6EC-06 17 44109537 44109537 G A KANSL1 Missense_Mutation p.P989L 0.40 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 17 4442857 4442857 A G MYBBP1A Silent p.A1280A 0.15 TCGA-D9-A6EC-06 17 4461979 4461979 C T GGT6 Silent p.G271G 1.00 TCGA-D9-A6EC-06 17 44952476 44952476 A C WNT9B Missense_Mutation p.E115A 0.20 deleterious(0) possibly_damaging(0.793) TCGA-D9-A6EC-06 17 45009485 45009485 A C GOSR2 Missense_Mutation p.N86H 0.29 tolerated(0.1) possibly_damaging(0.882) TCGA-D9-A6EC-06 17 45452041 45452041 A C EFCAB13 Missense_Mutation p.K361Q 0.96 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 17 45822585 45822585 C T TBX21 Silent p.S487S 0.95 TCGA-D9-A6EC-06 17 45994098 45994098 A G SP2 Missense_Mutation p.N221D 0.26 tolerated(0.42) benign(0) TCGA-D9-A6EC-06 17 4643995 4643995 C T ZMYND15 Missense_Mutation p.P51L 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A6EC-06 17 46685373 46685373 A C HOXB7 Missense_Mutation p.L162R 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 46700379 46700379 C T HOXB9 Silent p.R212R 0.29 TCGA-D9-A6EC-06 17 46998547 46998547 A G UBE2Z Missense_Mutation p.N239S 0.26 tolerated(0.13) benign(0.082) TCGA-D9-A6EC-06 17 4701345 4701345 C T PSMB6 Silent p.S158S 0.41 TCGA-D9-A6EC-06 17 4711135 4711135 A T PLD2 Missense_Mutation p.E23V 0.21 deleterious(0.01) benign(0.06) TCGA-D9-A6EC-06 17 47218648 47218648 C T B4GALNT2 Silent p.I78I 0.28 TCGA-D9-A6EC-06 17 47236516 47236516 A C B4GALNT2 Missense_Mutation p.K266Q 0.33 deleterious(0.01) benign(0.412) TCGA-D9-A6EC-06 17 47238001 47238001 C T B4GALNT2 Missense_Mutation p.P315L 0.93 deleterious(0.01) probably_damaging(0.917) TCGA-D9-A6EC-06 17 47246126 47246126 G A B4GALNT2 Silent p.R453R 0.61 TCGA-D9-A6EC-06 17 4725096 4725096 T G PLD2 Missense_Mutation p.L824R 0.06 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 17 4726190 4726190 C T PLD2 3'UTR 0.61 TCGA-D9-A6EC-06 17 47482503 47482503 T G PHB Missense_Mutation p.I224L 0.12 tolerated(0.19) benign(0.004) TCGA-D9-A6EC-06 17 48246561 48246561 T G SGCA Silent p.S231S 0.12 TCGA-D9-A6EC-06 17 48247704 48247704 G A SGCA Silent p.R316R 0.27 TCGA-D9-A6EC-06 17 48263867 48263867 T C COL1A1 Silent p.G1272G 0.20 TCGA-D9-A6EC-06 17 48266765 48266765 T C COL1A1 Silent p.K934K 0.30 TCGA-D9-A6EC-06 17 48269836 48269836 C T COL1A1 Silent p.Q661Q 0.29 TCGA-D9-A6EC-06 17 48272458 48272458 C T COL1A1 Missense_Mutation p.E435K 0.96 unknown(0) TCGA-D9-A6EC-06 17 48503748 48503748 C T ACSF2 Silent p.L42L 0.83 TCGA-D9-A6EC-06 17 48540596 48540596 T C ACSF2 Missense_Mutation p.L291P 0.39 deleterious(0) probably_damaging(0.981) TCGA-D9-A6EC-06 17 48629525 48629525 C T SPATA20 Silent p.P647P 0.34 TCGA-D9-A6EC-06 17 4994867 4994867 C T ZFP3 Missense_Mutation p.S23L 0.96 tolerated(0.27) benign(0.004) TCGA-D9-A6EC-06 17 5041445 5041445 C T USP6 Silent p.L319L 0.97 TCGA-D9-A6EC-06 17 53014034 53014034 T G TOM1L1 Missense_Mutation p.I293M 0.31 tolerated(0.15) possibly_damaging(0.615) TCGA-D9-A6EC-06 17 53797945 53797945 C T TMEM100 3'UTR 0.65 TCGA-D9-A6EC-06 17 5485268 5485268 G A NLRP1 Missense_Mutation p.S188F 1.00 tolerated(0.7) benign(0.003) TCGA-D9-A6EC-06 17 55183274 55183274 C T AKAP1 Missense_Mutation p.S150L 0.95 tolerated(0.57) benign(0.002) TCGA-D9-A6EC-06 17 56166550 56166550 A C DYNLL2 Silent p.R60R 0.17 TCGA-D9-A6EC-06 17 56232664 56232664 T G OR4D1 Silent p.T50T 0.09 TCGA-D9-A6EC-06 17 56435042 56435042 A C RNF43 Missense_Mutation p.L699V 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D9-A6EC-06 17 56620000 56620000 A C C17orf47 Silent p.T516T 0.11 TCGA-D9-A6EC-06 17 57043156 57043156 T C PPM1E Missense_Mutation p.Y229H 0.06 tolerated(0.05) possibly_damaging(0.459) TCGA-D9-A6EC-06 17 58128306 58128306 A T HEATR6 Silent p.G774G 0.21 TCGA-D9-A6EC-06 17 60088517 60088517 G A MED13 Missense_Mutation p.P454L 0.23 deleterious(0.01) benign(0.021) TCGA-D9-A6EC-06 17 60088518 60088518 G A MED13 Missense_Mutation p.P454S 0.23 tolerated(0.69) benign(0.003) TCGA-D9-A6EC-06 17 60769742 60769742 C T MRC2 Missense_Mutation p.S1457F 0.30 deleterious(0) possibly_damaging(0.841) TCGA-D9-A6EC-06 17 61021670 61021670 G A MIR633 RNA 0.50 TCGA-D9-A6EC-06 17 61769192 61769192 A T MAP3K3 Missense_Mutation p.S513C 0.08 deleterious(0) probably_damaging(0.917) TCGA-D9-A6EC-06 17 61972753 61972753 A C CSH1 Intron 0.28 TCGA-D9-A6EC-06 17 62130686 62130686 T C ERN1 Missense_Mutation p.T667A 0.23 tolerated(0.27) benign(0.002) TCGA-D9-A6EC-06 17 62290025 62290025 G A TEX2 Missense_Mutation p.P518L 0.66 deleterious(0.05) benign(0.367) TCGA-D9-A6EC-06 17 62290026 62290026 G T TEX2 Missense_Mutation p.P518T 0.67 deleterious(0.05) possibly_damaging(0.864) TCGA-D9-A6EC-06 17 62486992 62486992 T C POLG2 Missense_Mutation p.K297R 0.29 tolerated(0.16) possibly_damaging(0.907) TCGA-D9-A6EC-06 17 62487036 62487036 T C POLG2 Silent p.E282E 0.20 TCGA-D9-A6EC-06 17 63221352 63221352 C T RGS9 Missense_Mutation p.A547V 0.92 tolerated_low_confidence(0.31) benign(0.001) TCGA-D9-A6EC-06 17 6328778 6328778 G A AIPL1 3'UTR 0.95 TCGA-D9-A6EC-06 17 64210643 64210643 C T APOH Missense_Mutation p.E304K 0.16 tolerated(0.1) possibly_damaging(0.847) TCGA-D9-A6EC-06 17 64219883 64219883 C T APOH Silent p.L116L 0.94 TCGA-D9-A6EC-06 17 65026794 65026794 G A CACNG4 Missense_Mutation p.E220K 0.95 tolerated(0.08) benign(0.439) TCGA-D9-A6EC-06 17 65147220 65147220 T C HELZ Silent p.R766R 0.09 TCGA-D9-A6EC-06 17 6555499 6555499 C T C17orf100 Missense_Mutation p.S89F 0.96 deleterious_low_confidence(0.02) possibly_damaging(0.764) TCGA-D9-A6EC-06 17 65905702 65905702 A G BPTF Silent p.K939K 0.19 TCGA-D9-A6EC-06 17 6684035 6684035 T C FBXO39 Missense_Mutation p.L283P 0.33 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 17 67045454 67045454 T G ABCA9 Missense_Mutation p.N92H 0.07 deleterious(0) probably_damaging(0.948) TCGA-D9-A6EC-06 17 67102350 67102350 A C ABCA6 Missense_Mutation p.F798V 0.32 tolerated(0.5) possibly_damaging(0.558) TCGA-D9-A6EC-06 17 67197710 67197710 T G ABCA10 Missense_Mutation p.N369T 0.27 deleterious(0.01) benign(0.165) TCGA-D9-A6EC-06 17 71232071 71232071 A G C17orf80 Silent p.R150R 0.41 TCGA-D9-A6EC-06 17 71232551 71232551 A C C17orf80 Missense_Mutation p.K310N 0.29 deleterious(0.04) probably_damaging(0.985) TCGA-D9-A6EC-06 17 7230808 7230808 G A NEURL4 Silent p.A226A 0.96 TCGA-D9-A6EC-06 17 72339224 72339224 C T KIF19 Silent p.T127T 0.29 TCGA-D9-A6EC-06 17 72346988 72346988 G A AC103809.2 Missense_Mutation p.A108V 0.31 possibly_damaging(0.691) TCGA-D9-A6EC-06 17 72351367 72351367 T C KIF19 Silent p.G971G 0.15 TCGA-D9-A6EC-06 17 7250488 7250488 C T ACAP1 Missense_Mutation p.R424W 0.95 deleterious(0) probably_damaging(0.926) TCGA-D9-A6EC-06 17 7256638 7256638 T G KCTD11 Missense_Mutation p.L126R 0.18 deleterious(0) benign(0.185) TCGA-D9-A6EC-06 17 72832250 72832250 G A TMEM104 Silent p.R305R 0.95 TCGA-D9-A6EC-06 17 73125007 73125007 G A ARMC7 Silent p.R157R 1.00 TCGA-D9-A6EC-06 17 7345984 7345984 T C FGF11 Silent p.A160A 0.07 TCGA-D9-A6EC-06 17 73760003 73760003 G A GALK1 Silent p.V110V 0.24 TCGA-D9-A6EC-06 17 73808245 73808245 C T UNK Missense_Mutation p.R123C 0.97 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 17 74005925 74005925 C T EVPL Missense_Mutation p.E1121K 0.96 tolerated(0.46) benign(0.001) TCGA-D9-A6EC-06 17 74023229 74023229 G A EVPL Silent p.G17G 0.86 TCGA-D9-A6EC-06 17 7402840 7402840 A C POLR2A Intron 0.21 TCGA-D9-A6EC-06 17 7405230 7405230 C T POLR2A Silent p.V787V 0.89 TCGA-D9-A6EC-06 17 7406499 7406499 T C POLR2A Missense_Mutation p.V939A 0.24 possibly_damaging(0.525) TCGA-D9-A6EC-06 17 7406597 7406597 A C POLR2A Missense_Mutation p.T972P 0.10 probably_damaging(0.917) TCGA-D9-A6EC-06 17 74078123 74078123 T C ZACN Silent p.P347P 0.26 TCGA-D9-A6EC-06 17 74136160 74136160 G A FOXJ1 Missense_Mutation p.A106V 1.00 tolerated(0.61) benign(0.058) TCGA-D9-A6EC-06 17 74274085 74274085 G A QRICH2 Missense_Mutation p.S1535F 0.53 deleterious(0) probably_damaging(0.937) TCGA-D9-A6EC-06 17 74308973 74308973 A C PRPSAP1 Missense_Mutation p.I326S 0.16 deleterious(0) probably_damaging(0.94) TCGA-D9-A6EC-06 17 74309071 74309071 A C PRPSAP1 Missense_Mutation p.S293R 0.23 deleterious(0.02) possibly_damaging(0.681) TCGA-D9-A6EC-06 17 74328430 74328430 G A PRPSAP1 Missense_Mutation p.P126L 0.72 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 17 74397134 74397134 G A UBE2O Silent p.P284P 0.95 TCGA-D9-A6EC-06 17 74401639 74401639 G A UBE2O Missense_Mutation p.R145C 0.67 deleterious(0) possibly_damaging(0.635) TCGA-D9-A6EC-06 17 74475338 74475338 T C RHBDF2 Silent p.G127G 0.22 TCGA-D9-A6EC-06 17 74720107 74720107 A G JMJD6 Silent p.T184T 0.07 TCGA-D9-A6EC-06 17 75212540 75212540 C T SEC14L1 Intron 0.98 TCGA-D9-A6EC-06 17 75471610 75471610 A C SEPT9 Intron 0.20 TCGA-D9-A6EC-06 17 75494772 75494772 C T SEPT9 3'UTR 0.58 TCGA-D9-A6EC-06 17 7556717 7556717 T G ATP1B2 Silent p.V46V 0.26 TCGA-D9-A6EC-06 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.98 TCGA-D9-A6EC-06 17 7578291 7578291 T G TP53 Splice_Site p.X187_splice 0.35 TCGA-D9-A6EC-06 17 76075523 76075523 A G TNRC6C Silent p.Q1083Q 0.23 TCGA-D9-A6EC-06 17 76134767 76134767 T C TMC8 Missense_Mutation p.Y593H 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-D9-A6EC-06 17 76482446 76482446 C T DNAH17 Missense_Mutation p.V2307M 0.26 benign(0.003) TCGA-D9-A6EC-06 17 76482447 76482447 C T DNAH17 Silent p.T2306T 0.28 TCGA-D9-A6EC-06 17 76497147 76497147 T C DNAH17-AS1 3'UTR 0.43 TCGA-D9-A6EC-06 17 76535953 76535953 C T DNAH17 Missense_Mutation p.E848K 0.61 benign(0.013) TCGA-D9-A6EC-06 17 76802270 76802270 G A USP36 Silent p.V728V 0.35 TCGA-D9-A6EC-06 17 76870064 76870064 A T TIMP2 Intron 0.40 TCGA-D9-A6EC-06 17 76968406 76968406 T G LGALS3BP Missense_Mutation p.E337A 0.31 tolerated(0.46) benign(0.007) TCGA-D9-A6EC-06 17 76993603 76993603 G A CANT1 Silent p.A34A 1.00 TCGA-D9-A6EC-06 17 76993604 76993604 G C CANT1 Missense_Mutation p.A34G 1.00 tolerated(0.25) benign(0.008) TCGA-D9-A6EC-06 17 7704976 7704976 T G DNAH2 Missense_Mutation p.L2927R 0.05 probably_damaging(0.953) TCGA-D9-A6EC-06 17 77808020 77808020 T C CBX4 Missense_Mutation p.D474G 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-D9-A6EC-06 17 78166352 78166352 G A CARD14 Silent p.R430R 0.31 TCGA-D9-A6EC-06 17 78223002 78223002 C T SLC26A11 Silent p.I524I 0.96 TCGA-D9-A6EC-06 17 7831109 7831109 A C KCNAB3 Missense_Mutation p.L93R 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 78319018 78319018 C T RNF213 Missense_Mutation p.R2295W 0.93 probably_damaging(1) TCGA-D9-A6EC-06 17 78357683 78357683 A C RNF213 Missense_Mutation p.K4759N 0.27 benign(0.02) TCGA-D9-A6EC-06 17 78447020 78447020 C T NPTX1 Missense_Mutation p.E293K 0.66 deleterious(0.03) benign(0.35) TCGA-D9-A6EC-06 17 7907225 7907225 C T GUCY2D Silent p.L259L 0.24 TCGA-D9-A6EC-06 17 79170508 79170508 A C AZI1 Missense_Mutation p.I631S 0.33 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 17 79650829 79650829 C T ARL16 Silent p.L9L 0.40 TCGA-D9-A6EC-06 17 7980355 7980355 A G ALOX12B Missense_Mutation p.C410R 0.20 deleterious(0.02) benign(0.409) TCGA-D9-A6EC-06 17 7999874 7999874 T G ALOXE3 3'UTR 0.10 TCGA-D9-A6EC-06 17 80050383 80050383 T C FASN Missense_Mutation p.K326R 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 17 80211013 80211013 G C CSNK1D Missense_Mutation p.I148M 0.58 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D9-A6EC-06 17 8158980 8158980 T G PFAS Missense_Mutation p.L182R 0.20 tolerated(0.47) benign(0.001) TCGA-D9-A6EC-06 17 8169308 8169308 T G PFAS Missense_Mutation p.F892V 0.10 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 17 8222378 8222378 A G ARHGEF15 Missense_Mutation p.Q696R 0.12 deleterious(0.03) possibly_damaging(0.825) TCGA-D9-A6EC-06 17 8222399 8222399 G A ARHGEF15 Missense_Mutation p.G703E 0.96 deleterious(0.04) benign(0.265) TCGA-D9-A6EC-06 17 8396123 8396123 A G MYH10 Silent p.L1477L 0.25 TCGA-D9-A6EC-06 17 8785182 8785182 C T PIK3R5 Missense_Mutation p.R741Q 0.97 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 17 8788075 8788075 G A PIK3R5 Silent p.I718I 0.94 TCGA-D9-A6EC-06 17 9613338 9613338 C T USP43 Nonsense_Mutation p.R693* 0.92 TCGA-D9-A6EC-06 18 10696164 10696164 C T PIEZO2 Silent p.R2253R 0.59 TCGA-D9-A6EC-06 18 12274228 12274228 C T CIDEA Missense_Mutation p.S156F 0.63 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 18 13884968 13884968 G A MC2R Silent p.L184L 0.60 TCGA-D9-A6EC-06 18 14105180 14105180 G A ZNF519 Silent p.I453I 0.12 TCGA-D9-A6EC-06 18 14791479 14791479 G A ANKRD30B Missense_Mutation p.G605E 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-D9-A6EC-06 18 18534797 18534797 T A ROCK1 Missense_Mutation p.K1267M 0.29 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 18 19140892 19140892 T C ESCO1 Silent p.T627T 0.39 TCGA-D9-A6EC-06 18 20573317 20573317 T G RBBP8 Missense_Mutation p.S509R 0.20 tolerated(0.21) benign(0.008) TCGA-D9-A6EC-06 18 21338406 21338406 C T LAMA3 Missense_Mutation p.R332C 0.48 possibly_damaging(0.768) TCGA-D9-A6EC-06 18 21529810 21529810 T C LAMA3 Missense_Mutation p.F3145L 0.52 benign(0.001) TCGA-D9-A6EC-06 18 23713939 23713939 C T PSMA8 Nonsense_Mutation p.R4* 0.44 TCGA-D9-A6EC-06 18 23866336 23866336 T A TAF4B Missense_Mutation p.V488D 0.06 deleterious(0.01) benign(0.265) TCGA-D9-A6EC-06 18 24496387 24496387 G A CHST9 Silent p.L390L 0.41 TCGA-D9-A6EC-06 18 25570082 25570082 C T CDH2 Missense_Mutation p.R526Q 0.26 tolerated(0.06) benign(0.087) TCGA-D9-A6EC-06 18 25589753 25589753 G A CDH2 Silent p.F210F 0.29 TCGA-D9-A6EC-06 18 2567013 2567013 G A METTL4 Missense_Mutation p.S68F 0.57 deleterious(0.02) benign(0.002) TCGA-D9-A6EC-06 18 2674060 2674060 A C SMCHD1 Missense_Mutation p.N185T 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 18 28584175 28584175 C T DSC3 Silent p.R682R 0.51 TCGA-D9-A6EC-06 18 28584314 28584314 G A DSC3 Missense_Mutation p.S636L 0.84 tolerated(0.09) benign(0.219) TCGA-D9-A6EC-06 18 28588412 28588412 G A DSC3 Missense_Mutation p.P448L 0.97 tolerated(0.14) benign(0.001) TCGA-D9-A6EC-06 18 28671022 28671022 G A DSC2 Missense_Mutation p.S148F 0.85 deleterious(0) probably_damaging(0.933) TCGA-D9-A6EC-06 18 28710580 28710580 G A DSC1 Missense_Mutation p.S861L 0.94 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 18 28725729 28725729 C T DSC1 Missense_Mutation p.G262R 0.47 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 18 2890970 2890970 A T EMILIN2 Missense_Mutation p.E282V 0.13 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 18 29102059 29102059 G A DSG2 Missense_Mutation p.M179I 0.37 deleterious(0.02) benign(0.075) TCGA-D9-A6EC-06 18 29104742 29104742 G A DSG2 Missense_Mutation p.G302D 0.87 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 18 31314355 31314355 T G ASXL3 Missense_Mutation p.F353C 0.19 probably_damaging(1) TCGA-D9-A6EC-06 18 31320002 31320002 T G ASXL3 Silent p.P878P 0.46 TCGA-D9-A6EC-06 18 31323100 31323100 G A ASXL3 Silent p.T1096T 1.00 TCGA-D9-A6EC-06 18 31323335 31323335 C T ASXL3 Missense_Mutation p.L1175F 0.57 possibly_damaging(0.721) TCGA-D9-A6EC-06 18 3151753 3151753 G A MYOM1 Silent p.F594F 0.30 TCGA-D9-A6EC-06 18 3188759 3188759 G A MYOM1 Missense_Mutation p.S253F 0.37 deleterious(0) possibly_damaging(0.541) TCGA-D9-A6EC-06 18 32838002 32838002 T G ZSCAN30 Intron 0.39 TCGA-D9-A6EC-06 18 33718367 33718367 C G ELP2 Silent p.L141L 0.89 TCGA-D9-A6EC-06 18 33795673 33795673 C T MOCOS Silent p.A510A 0.25 TCGA-D9-A6EC-06 18 33795725 33795725 A T MOCOS Missense_Mutation p.S528C 0.24 tolerated(0.11) benign(0.005) TCGA-D9-A6EC-06 18 346877 346877 G A COLEC12 Missense_Mutation p.L249F 0.56 tolerated(0.7) probably_damaging(0.969) TCGA-D9-A6EC-06 18 3534353 3534353 A C DLGAP1 Missense_Mutation p.I773S 0.22 deleterious(0) possibly_damaging(0.816) TCGA-D9-A6EC-06 18 42533085 42533085 G A SETBP1 Silent p.T1260T 0.86 TCGA-D9-A6EC-06 18 43212350 43212350 G A SLC14A2 Missense_Mutation p.G186E 0.91 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 18 43217120 43217120 C T SLC14A2 Silent p.I272I 0.84 TCGA-D9-A6EC-06 18 43221200 43221200 A G SLC14A2 Missense_Mutation p.T340A 0.25 tolerated(0.34) benign(0.005) TCGA-D9-A6EC-06 18 43247862 43247862 G A SLC14A2 Silent p.V594V 0.92 TCGA-D9-A6EC-06 18 44336540 44336540 C T ST8SIA5 5'UTR 1.00 TCGA-D9-A6EC-06 18 44561088 44561088 C T TCEB3B Missense_Mutation p.G183D 0.93 tolerated(1) benign(0.012) TCGA-D9-A6EC-06 18 47008751 47008751 T G C18orf32 Missense_Mutation p.K65N 0.25 tolerated(0.31) benign(0.315) TCGA-D9-A6EC-06 18 47101911 47101911 C T LIPG Silent p.F248F 0.42 TCGA-D9-A6EC-06 18 47463691 47463691 G A MYO5B Missense_Mutation p.S610L 0.93 tolerated(0.11) benign(0.442) TCGA-D9-A6EC-06 18 52265368 52265368 C T DYNAP Missense_Mutation p.H209Y 0.91 tolerated_low_confidence(0.14) unknown(0) TCGA-D9-A6EC-06 18 55398982 55398982 C T ATP8B1 Missense_Mutation p.E20K 0.87 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-D9-A6EC-06 18 56184283 56184283 C T ALPK2 Missense_Mutation p.A1933T 0.91 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 18 56203732 56203732 A C ALPK2 Missense_Mutation p.N1229K 0.45 tolerated(0.76) benign(0.008) TCGA-D9-A6EC-06 18 56204151 56204151 G A ALPK2 Missense_Mutation p.P1090S 0.90 tolerated(0.84) benign(0.062) TCGA-D9-A6EC-06 18 5969427 5969427 G A L3MBTL4 Missense_Mutation p.R536W 0.56 deleterious(0.02) benign(0.226) TCGA-D9-A6EC-06 18 59925255 59925255 A G KIAA1468 Silent p.R657R 0.38 TCGA-D9-A6EC-06 18 61066506 61066506 G A VPS4B Missense_Mutation p.P281S 0.90 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 18 61225609 61225609 C T SERPINB12 Nonsense_Mutation p.Q65* 0.90 TCGA-D9-A6EC-06 18 61262329 61262329 T C SERPINB13 Silent p.L228L 0.09 TCGA-D9-A6EC-06 18 61379848 61379848 A C SERPINB11 Missense_Mutation p.Q93P 0.35 deleterious(0.02) probably_damaging(0.943) TCGA-D9-A6EC-06 18 618100 618100 C T CLUL1 Silent p.L34L 0.66 TCGA-D9-A6EC-06 18 6311622 6311622 C T L3MBTL4 Translation_Start_Site p.M1? 0.63 deleterious_low_confidence(0.03) benign(0.38) TCGA-D9-A6EC-06 18 64239264 64239264 T C CDH19 Missense_Mutation p.S60G 0.58 tolerated(0.13) benign(0.079) TCGA-D9-A6EC-06 18 66721273 66721273 G A CCDC102B Missense_Mutation p.D481N 0.92 deleterious(0.02) possibly_damaging(0.682) TCGA-D9-A6EC-06 18 674188 674188 T C ENOSF1 3'UTR 0.11 TCGA-D9-A6EC-06 18 67727112 67727112 T G RTTN Missense_Mutation p.Q1638H 0.40 tolerated(0.19) possibly_damaging(0.667) TCGA-D9-A6EC-06 18 67812980 67812980 A G RTTN Silent p.L783L 0.11 TCGA-D9-A6EC-06 18 6873690 6873690 G A ARHGAP28 Silent p.G217G 0.30 TCGA-D9-A6EC-06 18 71796734 71796734 T C FBXO15 Missense_Mutation p.K231E 0.81 tolerated(0.32) benign(0.367) TCGA-D9-A6EC-06 18 7231409 7231409 G A LRRC30 Silent p.G91G 0.50 TCGA-D9-A6EC-06 18 74692275 74692275 A T RP11-862L9.3 5'Flank 0.48 TCGA-D9-A6EC-06 18 77208904 77208904 C T NFATC1 Silent p.S490S 0.82 TCGA-D9-A6EC-06 18 8784392 8784392 T G SOGA2 Missense_Mutation p.F428V 0.16 deleterious(0.02) benign(0.26) TCGA-D9-A6EC-06 18 8819022 8819022 A T SOGA2 Missense_Mutation p.N974I 0.14 tolerated(0.11) benign(0.272) TCGA-D9-A6EC-06 18 9255103 9255103 A T ANKRD12 Missense_Mutation p.H613L 0.68 deleterious_low_confidence(0.05) benign(0.245) TCGA-D9-A6EC-06 18 9255104 9255104 C T ANKRD12 Silent p.H613H 0.67 TCGA-D9-A6EC-06 18 9535889 9535889 C T RALBP1 Missense_Mutation p.P641L 0.38 tolerated_low_confidence(0.4) benign(0) TCGA-D9-A6EC-06 18 9550355 9550355 A C PPP4R1 Missense_Mutation p.V778G 0.08 deleterious(0) benign(0.42) TCGA-D9-A6EC-06 19 10079356 10079356 C T COL5A3 Missense_Mutation p.E1401K 0.29 unknown(0) TCGA-D9-A6EC-06 19 10089906 10089906 C T COL5A3 Missense_Mutation p.G926R 0.49 unknown(0) TCGA-D9-A6EC-06 19 10114360 10114360 G A COL5A3 Missense_Mutation p.P244S 0.21 unknown(0) TCGA-D9-A6EC-06 19 10129506 10129506 T C RDH8 Missense_Mutation p.L141P 0.26 deleterious(0.02) probably_damaging(0.987) TCGA-D9-A6EC-06 19 1013258 1013258 G A TMEM259 Missense_Mutation p.P197S 0.41 tolerated(1) benign(0.014) TCGA-D9-A6EC-06 19 10197940 10197940 A C C19orf66 Missense_Mutation p.K53N 0.16 tolerated(0.2) benign(0.172) TCGA-D9-A6EC-06 19 10398044 10398044 G A ICAM4 Missense_Mutation p.G119E 0.56 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 19 10398364 10398364 T C ICAM4 Missense_Mutation p.L157P 0.33 deleterious_low_confidence(0) benign(0.008) TCGA-D9-A6EC-06 19 1041937 1041937 G A ABCA7 Missense_Mutation p.E90K 0.42 tolerated(0.38) benign(0.006) TCGA-D9-A6EC-06 19 10449580 10449580 G A ICAM3 Missense_Mutation p.P41S 0.39 deleterious(0.05) possibly_damaging(0.696) TCGA-D9-A6EC-06 19 10464893 10464893 G A TYK2 Silent p.V911V 0.54 TCGA-D9-A6EC-06 19 10528343 10528343 G A PDE4A 5'Flank 0.44 TCGA-D9-A6EC-06 19 1056935 1056935 C T ABCA7 Missense_Mutation p.S1539F 0.47 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 10664941 10664941 C T KRI1 Missense_Mutation p.E606K 0.53 tolerated(0.31) benign(0.041) TCGA-D9-A6EC-06 19 10664942 10664942 C T KRI1 Silent p.A605A 0.55 TCGA-D9-A6EC-06 19 10672385 10672385 G A KRI1 Missense_Mutation p.S155L 0.48 tolerated(0.19) benign(0.002) TCGA-D9-A6EC-06 19 1073259 1073259 C T HMHA1 Missense_Mutation p.T194I 0.44 deleterious(0) possibly_damaging(0.884) TCGA-D9-A6EC-06 19 10748909 10748909 T C SLC44A2 Missense_Mutation p.L616P 0.08 deleterious(0) benign(0.111) TCGA-D9-A6EC-06 19 10799891 10799891 C T ILF3 Missense_Mutation p.S867F 0.40 deleterious_low_confidence(0) unknown(0) TCGA-D9-A6EC-06 19 1093967 1093967 C T POLR2E Silent p.T56T 0.41 TCGA-D9-A6EC-06 19 11216158 11216158 G A LDLR Silent p.G192G 0.48 TCGA-D9-A6EC-06 19 11216159 11216159 G A LDLR Missense_Mutation p.D193N 0.48 tolerated(0.34) benign(0.001) TCGA-D9-A6EC-06 19 11227637 11227637 A C LDLR Missense_Mutation p.K603T 0.23 tolerated(0.12) benign(0.008) TCGA-D9-A6EC-06 19 11333704 11333704 A G DOCK6 Missense_Mutation p.F1012L 0.18 deleterious(0.02) possibly_damaging(0.562) TCGA-D9-A6EC-06 19 11558530 11558530 C T PRKCSH Missense_Mutation p.P344L 0.50 deleterious(0.02) benign(0.193) TCGA-D9-A6EC-06 19 11624680 11624680 G A ECSIT Silent p.F151F 0.38 TCGA-D9-A6EC-06 19 11651957 11651957 C T CNN1 Missense_Mutation p.R44C 0.22 tolerated(0.1) probably_damaging(0.941) TCGA-D9-A6EC-06 19 11728653 11728653 A T ZNF627 Missense_Mutation p.K445N 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-D9-A6EC-06 19 11793449 11793449 A C ZNF833P RNA 0.18 TCGA-D9-A6EC-06 19 11796126 11796126 G A ZNF833P RNA 0.30 TCGA-D9-A6EC-06 19 11796645 11796645 A T ZNF833P RNA 0.29 TCGA-D9-A6EC-06 19 11942465 11942465 C T ZNF440 Silent p.S158S 0.41 TCGA-D9-A6EC-06 19 11942625 11942625 C T ZNF440 Missense_Mutation p.L212F 0.51 tolerated(0.75) benign(0.015) TCGA-D9-A6EC-06 19 12090036 12090036 T G ZNF763 3'UTR 0.23 TCGA-D9-A6EC-06 19 12256664 12256664 T C ZNF625 Silent p.G189G 0.21 TCGA-D9-A6EC-06 19 12256895 12256896 - AGGG ZNF625 Frame_Shift_Ins p.N113Pfs*2 0.39 TCGA-D9-A6EC-06 19 1231049 1231049 G A C19orf26 Missense_Mutation p.P402L 0.19 deleterious_low_confidence(0.01) benign(0.046) TCGA-D9-A6EC-06 19 12461747 12461747 A C ZNF442 Missense_Mutation p.F218V 0.14 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 12574842 12574842 G A ZNF709 Nonsense_Mutation p.R632* 0.45 TCGA-D9-A6EC-06 19 12693674 12693674 T G ZNF490 Silent p.R114R 0.18 TCGA-D9-A6EC-06 19 12738685 12738685 C T ZNF791 Silent p.S114S 0.42 TCGA-D9-A6EC-06 19 12738915 12738915 A G ZNF791 Missense_Mutation p.K191R 0.22 deleterious(0.01) possibly_damaging(0.832) TCGA-D9-A6EC-06 19 12739546 12739546 C T ZNF791 Silent p.I401I 0.46 TCGA-D9-A6EC-06 19 12805448 12805448 A G FBXW9 Missense_Mutation p.L213P 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-D9-A6EC-06 19 12977552 12977552 T A MAST1 Silent p.S705S 0.50 TCGA-D9-A6EC-06 19 12995747 12995747 A C KLF1 Silent p.A347A 0.17 TCGA-D9-A6EC-06 19 13010564 13010564 T C GCDH 3'UTR 0.16 TCGA-D9-A6EC-06 19 13035542 13035542 T G FARSA Missense_Mutation p.E369A 0.21 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 13059566 13059566 T C RAD23A Missense_Mutation p.V180A 0.15 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 19 13941263 13941263 A G ZSWIM4 Missense_Mutation p.Q790R 0.15 tolerated(0.08) unknown(0) TCGA-D9-A6EC-06 19 13941356 13941356 C T ZSWIM4 Missense_Mutation p.A821V 0.44 deleterious(0.01) unknown(0) TCGA-D9-A6EC-06 19 14139133 14139133 C T RLN3 Silent p.F39F 0.15 TCGA-D9-A6EC-06 19 14141657 14141657 G A RLN3 Missense_Mutation p.G109E 0.53 deleterious(0.04) benign(0.393) TCGA-D9-A6EC-06 19 1430218 1430218 C T DAZAP1 Intron 0.59 TCGA-D9-A6EC-06 19 1430277 1430277 A G DAZAP1 Missense_Mutation p.T263A 0.19 tolerated(0.22) unknown(0) TCGA-D9-A6EC-06 19 1440440 1440440 C T RPS15 Silent p.S139S 0.36 TCGA-D9-A6EC-06 19 14569135 14569135 A T PKN1 Missense_Mutation p.E462V 0.20 tolerated(0.18) benign(0.041) TCGA-D9-A6EC-06 19 14574746 14574746 T C PKN1 Silent p.P540P 0.09 TCGA-D9-A6EC-06 19 1465837 1465837 A C APC2 Missense_Mutation p.K846T 0.19 possibly_damaging(0.71) TCGA-D9-A6EC-06 19 1468579 1468579 A C APC2 Missense_Mutation p.K1760T 0.28 benign(0.048) TCGA-D9-A6EC-06 19 14862289 14862289 A C EMR2 Missense_Mutation p.I661M 0.27 deleterious(0.01) possibly_damaging(0.795) TCGA-D9-A6EC-06 19 15052501 15052501 C T OR7C2 Silent p.S67S 0.51 TCGA-D9-A6EC-06 19 1506274 1506274 C T ADAMTSL5 Missense_Mutation p.E386K 0.11 deleterious(0) possibly_damaging(0.895) TCGA-D9-A6EC-06 19 15083641 15083641 C T SLC1A6 Missense_Mutation p.E28K 0.47 tolerated(0.22) benign(0.014) TCGA-D9-A6EC-06 19 1510372 1510372 A C ADAMTSL5 Missense_Mutation p.L83V 0.21 tolerated(0.09) benign(0.219) TCGA-D9-A6EC-06 19 15132265 15132265 G A CCDC105 Silent p.Q325Q 0.39 TCGA-D9-A6EC-06 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.45 TCGA-D9-A6EC-06 19 15303220 15303220 C T NOTCH3 Missense_Mutation p.R103Q 0.44 tolerated(0.62) benign(0.011) TCGA-D9-A6EC-06 19 15338390 15338390 A T EPHX3 Missense_Mutation p.L314Q 0.33 deleterious(0) benign(0.41) TCGA-D9-A6EC-06 19 15349970 15349970 G A BRD4 Missense_Mutation p.R1228C 0.56 possibly_damaging(0.77) TCGA-D9-A6EC-06 19 15366133 15366133 A C BRD4 Missense_Mutation p.C674W 0.20 possibly_damaging(0.675) TCGA-D9-A6EC-06 19 15366370 15366370 G A BRD4 Silent p.P595P 0.44 TCGA-D9-A6EC-06 19 15587137 15587137 T G PGLYRP2 Missense_Mutation p.D115A 0.05 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 15640606 15640606 C T CYP4F22 Silent p.V103V 0.43 TCGA-D9-A6EC-06 19 15651488 15651488 G T CYP4F22 Missense_Mutation p.G300V 0.22 tolerated(0.12) probably_damaging(1) TCGA-D9-A6EC-06 19 15651489 15651489 G A CYP4F22 Silent p.G300G 0.20 TCGA-D9-A6EC-06 19 15728897 15728897 C T AD000091.2 5'Flank 0.48 TCGA-D9-A6EC-06 19 15740024 15740024 C T CYP4F8 RNA 0.50 TCGA-D9-A6EC-06 19 15770132 15770132 G A CYP4F3 Silent p.R500R 0.43 TCGA-D9-A6EC-06 19 15905118 15905118 C T OR10H5 Missense_Mutation p.S87F 0.42 tolerated(0.07) benign(0.027) TCGA-D9-A6EC-06 19 16032951 16032951 G A CYP4F11 Silent p.L337L 0.19 TCGA-D9-A6EC-06 19 1615701 1615701 G A TCF3 Missense_Mutation p.P524S 0.23 tolerated(1) benign(0.005) TCGA-D9-A6EC-06 19 16634034 16634034 A G CHERP Silent p.P603P 0.22 TCGA-D9-A6EC-06 19 16677345 16677345 A T SLC35E1 Missense_Mutation p.L252M 0.21 deleterious(0.05) possibly_damaging(0.903) TCGA-D9-A6EC-06 19 16770957 16770957 G A SMIM7 5'UTR 0.42 TCGA-D9-A6EC-06 19 16799203 16799203 G A TMEM38A 3'UTR 0.33 TCGA-D9-A6EC-06 19 16923627 16923627 G A NWD1 Intron 0.38 TCGA-D9-A6EC-06 19 17001319 17001319 G A F2RL3 Missense_Mutation p.D349N 0.38 tolerated(0.13) benign(0.157) TCGA-D9-A6EC-06 19 17295733 17295733 C T MYO9B Silent p.T811T 0.48 TCGA-D9-A6EC-06 19 17367431 17367431 T G USHBP1 Missense_Mutation p.K440T 0.24 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 19 17403476 17403476 C T ABHD8 Silent p.K438K 0.48 TCGA-D9-A6EC-06 19 17440985 17440985 T A ANO8 Missense_Mutation p.S408C 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-D9-A6EC-06 19 17945904 17945904 A C JAK3 Missense_Mutation p.L679V 0.15 deleterious(0.02) probably_damaging(0.955) TCGA-D9-A6EC-06 19 1796742 1796742 A G ATP8B3 Missense_Mutation p.V574A 0.10 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 19 18186629 18186629 G A IL12RB1 Silent p.L210L 0.24 TCGA-D9-A6EC-06 19 1827847 1827847 T G REXO1 Missense_Mutation p.E314A 0.12 tolerated(0.08) benign(0.001) TCGA-D9-A6EC-06 19 18541718 18541718 C T SSBP4 Missense_Mutation p.S116F 0.41 tolerated(0.07) benign(0.07) TCGA-D9-A6EC-06 19 18778631 18778631 T G KLHL26 Missense_Mutation p.F142V 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-D9-A6EC-06 19 18888074 18888074 C T CRTC1 Missense_Mutation p.P612L 0.46 tolerated(0.07) probably_damaging(0.913) TCGA-D9-A6EC-06 19 18994926 18994926 A T CERS1 Missense_Mutation p.L187H 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A6EC-06 19 19038659 19038659 A G DDX49 Missense_Mutation p.E396G 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A6EC-06 19 19121011 19121011 G A SUGP2 Missense_Mutation p.S664F 0.48 deleterious(0) benign(0.139) TCGA-D9-A6EC-06 19 19168625 19168625 C T ARMC6 3'UTR 0.22 TCGA-D9-A6EC-06 19 19329828 19329828 C T NCAN Missense_Mutation p.L60F 0.47 tolerated(0.07) probably_damaging(0.999) TCGA-D9-A6EC-06 19 19338642 19338642 T C NCAN Missense_Mutation p.F738S 0.33 tolerated(0.13) benign(0.002) TCGA-D9-A6EC-06 19 19378881 19378881 T G TM6SF2 Silent p.R209R 0.17 TCGA-D9-A6EC-06 19 19407922 19407922 T C SUGP1 Silent p.P373P 0.07 TCGA-D9-A6EC-06 19 1954181 1954181 C T CSNK1G2 Intron 0.56 TCGA-D9-A6EC-06 19 19603415 19603415 G A GATAD2A Missense_Mutation p.R143K 0.45 tolerated(0.19) benign(0.041) TCGA-D9-A6EC-06 19 19745609 19745609 G A GMIP Missense_Mutation p.L627F 0.50 tolerated(0.31) possibly_damaging(0.717) TCGA-D9-A6EC-06 19 2112911 2112911 T G AP3D1 Missense_Mutation p.K912T 0.21 tolerated_low_confidence(0.09) benign(0.007) TCGA-D9-A6EC-06 19 21132578 21132578 C T ZNF85 Missense_Mutation p.H420Y 0.29 deleterious(0.01) benign(0.311) TCGA-D9-A6EC-06 19 21205643 21205643 C T ZNF430 Missense_Mutation p.P18S 0.47 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-D9-A6EC-06 19 21606488 21606488 C T ZNF493 Missense_Mutation p.H343Y 0.12 deleterious(0) unknown(0) TCGA-D9-A6EC-06 19 22155582 22155582 C T ZNF208 Missense_Mutation p.E752K 0.35 tolerated(0.58) probably_damaging(0.955) TCGA-D9-A6EC-06 19 22156722 22156722 C T ZNF208 Missense_Mutation p.E372K 0.26 tolerated(0.72) probably_damaging(0.992) TCGA-D9-A6EC-06 19 22170068 22170068 C T ZNF208 Missense_Mutation p.G59E 0.43 tolerated(0.13) benign(0.113) TCGA-D9-A6EC-06 19 22271967 22271967 C T ZNF257 Missense_Mutation p.S472L 0.39 deleterious(0.01) benign(0.216) TCGA-D9-A6EC-06 19 22364321 22364321 C T ZNF676 Missense_Mutation p.M66I 0.61 tolerated(0.1) benign(0.001) TCGA-D9-A6EC-06 19 22575774 22575774 G A ZNF98 Missense_Mutation p.S88F 0.40 tolerated(0.07) probably_damaging(0.962) TCGA-D9-A6EC-06 19 22847625 22847625 G A ZNF492 Missense_Mutation p.R385K 0.12 tolerated(0.78) benign(0.006) TCGA-D9-A6EC-06 19 23328855 23328855 G A ZNF730 Missense_Mutation p.E337K 0.20 deleterious(0.04) probably_damaging(0.936) TCGA-D9-A6EC-06 19 23927726 23927726 C T ZNF681 Missense_Mutation p.G209E 0.25 tolerated(0.37) probably_damaging(0.972) TCGA-D9-A6EC-06 19 24310465 24310465 T G ZNF254 Missense_Mutation p.F555V 0.21 deleterious(0) possibly_damaging(0.841) TCGA-D9-A6EC-06 19 2717443 2717443 T C DIRAS1 Missense_Mutation p.N121S 0.22 deleterious(0.04) probably_damaging(1) TCGA-D9-A6EC-06 19 2717444 2717444 T A DIRAS1 Missense_Mutation p.N121Y 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 2732843 2732843 T G SLC39A3 Missense_Mutation p.K284T 0.18 deleterious(0.01) possibly_damaging(0.569) TCGA-D9-A6EC-06 19 2823039 2823039 T C ZNF554 Missense_Mutation p.S19P 0.09 deleterious(0.02) benign(0) TCGA-D9-A6EC-06 19 2851596 2851596 T G ZNF555 Missense_Mutation p.I87M 0.19 tolerated(0.1) benign(0.201) TCGA-D9-A6EC-06 19 2878057 2878057 G A ZNF556 Silent p.E367E 0.51 TCGA-D9-A6EC-06 19 2878333 2878333 G A ZNF556 3'UTR 0.44 TCGA-D9-A6EC-06 19 2917695 2917695 C T ZNF57 Missense_Mutation p.T359I 0.41 deleterious(0.04) probably_damaging(0.992) TCGA-D9-A6EC-06 19 3009615 3009615 G A TLE2 Silent p.S366S 0.55 TCGA-D9-A6EC-06 19 3009616 3009616 G A TLE2 Missense_Mutation p.S366F 0.52 deleterious(0.01) possibly_damaging(0.569) TCGA-D9-A6EC-06 19 30936527 30936527 C T ZNF536 Silent p.S686S 0.40 TCGA-D9-A6EC-06 19 31048151 31048151 C T ZNF536 3'UTR 0.51 TCGA-D9-A6EC-06 19 3157801 3157801 C T GNA15 Missense_Mutation p.L274F 0.40 deleterious(0.01) benign(0.096) TCGA-D9-A6EC-06 19 3251057 3251057 T G CELF5 Missense_Mutation p.L112V 0.17 deleterious(0.01) benign(0.031) TCGA-D9-A6EC-06 19 32954858 32954858 A C DPY19L3 Missense_Mutation p.K510T 0.18 deleterious(0.05) benign(0.038) TCGA-D9-A6EC-06 19 33333131 33333131 C T SLC7A9 Silent p.T389T 0.46 TCGA-D9-A6EC-06 19 33512477 33512477 C T RHPN2 Silent p.K130K 0.39 TCGA-D9-A6EC-06 19 33695697 33695697 C T LRP3 Silent p.F138F 0.43 TCGA-D9-A6EC-06 19 34900064 34900064 A G RP11-618P17.4 Splice_Site p.X141_splice 0.13 TCGA-D9-A6EC-06 19 34912484 34912484 C T PDCD2L Silent p.L286L 0.49 TCGA-D9-A6EC-06 19 35232335 35232335 A T ZNF181 Missense_Mutation p.E350V 0.10 tolerated(0.13) probably_damaging(0.994) TCGA-D9-A6EC-06 19 35434812 35434812 A G ZNF30 Silent p.K315K 0.26 TCGA-D9-A6EC-06 19 35530158 35530158 A G SCN1B 3'Flank 0.25 TCGA-D9-A6EC-06 19 35616133 35616133 C T LGI4 Silent p.Q526Q 0.47 TCGA-D9-A6EC-06 19 35941674 35941674 G A FFAR2 3'UTR 0.47 TCGA-D9-A6EC-06 19 36004040 36004040 A C DMKN Missense_Mutation p.I113S 0.27 deleterious(0.02) possibly_damaging(0.563) TCGA-D9-A6EC-06 19 36297625 36297625 C T PRODH2 Silent p.P338P 0.41 TCGA-D9-A6EC-06 19 36321847 36321847 C T NPHS1 Missense_Mutation p.E1165K 0.47 tolerated(0.4) benign(0.002) TCGA-D9-A6EC-06 19 36342489 36342489 T G NPHS1 Silent p.S48S 0.21 TCGA-D9-A6EC-06 19 36363482 36363482 C T APLP1 Silent p.D316D 0.39 TCGA-D9-A6EC-06 19 36364550 36364550 G A APLP1 Missense_Mutation p.E331K 0.50 deleterious(0) benign(0.156) TCGA-D9-A6EC-06 19 36517546 36517546 C T CLIP3 Silent p.A168A 0.47 TCGA-D9-A6EC-06 19 36593010 36593010 C T WDR62 Silent p.F1059F 0.27 TCGA-D9-A6EC-06 19 36853083 36853083 G A ZFP14 Silent p.L23L 0.40 TCGA-D9-A6EC-06 19 37117883 37117883 C T ZNF382 Missense_Mutation p.R362C 0.19 tolerated(0.14) possibly_damaging(0.863) TCGA-D9-A6EC-06 19 37618411 37618411 G A ZNF420 Missense_Mutation p.G173E 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-D9-A6EC-06 19 37619717 37619717 C T ZNF420 Silent p.I608I 0.43 TCGA-D9-A6EC-06 19 37642629 37642629 C T ZNF585A Silent p.G669G 0.29 TCGA-D9-A6EC-06 19 38655510 38655510 T G SIPA1L3 Missense_Mutation p.L1391R 0.23 tolerated(0.38) benign(0.16) TCGA-D9-A6EC-06 19 38948906 38948906 G A RYR1 Missense_Mutation p.G714D 0.44 probably_damaging(0.974) TCGA-D9-A6EC-06 19 38951079 38951079 C T RYR1 Missense_Mutation p.P809S 0.48 probably_damaging(0.965) TCGA-D9-A6EC-06 19 38976625 38976625 T C RYR1 Missense_Mutation p.F1777S 0.27 possibly_damaging(0.603) TCGA-D9-A6EC-06 19 38980008 38980008 A G RYR1 Silent p.A1913A 0.23 TCGA-D9-A6EC-06 19 39003037 39003037 T C RYR1 Missense_Mutation p.L3129P 0.24 benign(0.088) TCGA-D9-A6EC-06 19 39292672 39292672 T G LGALS4 Missense_Mutation p.K262T 0.20 tolerated(0.19) benign(0.05) TCGA-D9-A6EC-06 19 39338034 39338034 A C HNRNPL Missense_Mutation p.V103G 0.12 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 19 39371532 39371532 G A SIRT2 Silent p.F251F 0.39 TCGA-D9-A6EC-06 19 3939940 3939940 C T NMRK2 Silent p.V122V 0.56 TCGA-D9-A6EC-06 19 39691093 39691093 C T NCCRP1 Missense_Mutation p.S219F 0.27 tolerated(0.06) probably_damaging(0.914) TCGA-D9-A6EC-06 19 3980032 3980032 G A EEF2 Missense_Mutation p.P460L 0.55 tolerated(0.08) possibly_damaging(0.543) TCGA-D9-A6EC-06 19 39819138 39819138 T A GMFG Missense_Mutation p.E136D 0.18 tolerated(0.12) possibly_damaging(0.889) TCGA-D9-A6EC-06 19 3985452 3985452 G A EEF2 5'UTR 0.45 TCGA-D9-A6EC-06 19 40172142 40172142 C T AC093063.3 5'Flank 0.47 TCGA-D9-A6EC-06 19 4024052 4024052 A C PIAS4 Missense_Mutation p.K158T 0.17 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 19 40354138 40354138 T C FCGBP Splice_Site p.X5403_splice 0.25 TCGA-D9-A6EC-06 19 40357470 40357470 G A FCGBP Silent p.V5281V 0.32 TCGA-D9-A6EC-06 19 40718847 40718847 C T MAP3K10 Missense_Mutation p.S563F 0.39 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 19 40978545 40978545 G A SPTBN4 Missense_Mutation p.G6E 0.44 tolerated(0.09) benign(0) TCGA-D9-A6EC-06 19 41072163 41072163 C T SPTBN4 Silent p.S2078S 0.67 TCGA-D9-A6EC-06 19 41188843 41188843 G A NUMBL Missense_Mutation p.R94W 0.45 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 19 41235230 41235230 T C ITPKC Missense_Mutation p.V460A 0.18 deleterious(0) probably_damaging(0.959) TCGA-D9-A6EC-06 19 41387931 41387931 G A CYP2A7 Intron 0.42 TCGA-D9-A6EC-06 19 41515920 41515920 G A CYP2B6 Missense_Mutation p.E282K 0.48 deleterious(0.03) benign(0.104) TCGA-D9-A6EC-06 19 41711862 41711862 G A CYP2S1 Splice_Site p.X389_splice 0.46 TCGA-D9-A6EC-06 19 41748871 41748871 A C AXL Missense_Mutation p.I466L 0.17 tolerated(0.69) benign(0.001) TCGA-D9-A6EC-06 19 41779941 41779941 C T HNRNPUL1 Silent p.T209T 0.18 TCGA-D9-A6EC-06 19 41822725 41822725 C T CCDC97 Silent p.A161A 0.21 TCGA-D9-A6EC-06 19 42085640 42085640 G A CEACAM21 Intron 0.50 TCGA-D9-A6EC-06 19 42128035 42128035 G A CEACAM4 Silent p.S177S 0.45 TCGA-D9-A6EC-06 19 42190996 42190996 T G CEACAM7 Missense_Mutation p.H74P 0.12 deleterious(0.01) benign(0.425) TCGA-D9-A6EC-06 19 42219000 42219000 T C CEACAM5 Missense_Mutation p.W179R 0.15 tolerated(0.89) possibly_damaging(0.854) TCGA-D9-A6EC-06 19 42224019 42224019 A G CEACAM5 Missense_Mutation p.T555A 0.18 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 19 42341250 42341250 G A LYPD4 Silent p.V236V 0.41 TCGA-D9-A6EC-06 19 42492152 42492152 G A ATP1A3 Missense_Mutation p.A111V 0.43 tolerated(0.06) probably_damaging(0.996) TCGA-D9-A6EC-06 19 42729232 42729232 A C ZNF526 Missense_Mutation p.E226A 0.15 tolerated(0.06) probably_damaging(0.989) TCGA-D9-A6EC-06 19 42795451 42795451 C T CIC Missense_Mutation p.P844L 0.55 benign(0.068) TCGA-D9-A6EC-06 19 42796863 42796863 C T CIC Silent p.P1107P 0.45 TCGA-D9-A6EC-06 19 42837755 42837755 A T MEGF8 Splice_Site p.X63_splice 0.24 TCGA-D9-A6EC-06 19 42841327 42841327 A G MEGF8 Silent p.G494G 0.13 TCGA-D9-A6EC-06 19 42861646 42861646 C T MEGF8 Missense_Mutation p.P1574S 0.45 tolerated(0.07) possibly_damaging(0.882) TCGA-D9-A6EC-06 19 42861647 42861647 C T MEGF8 Missense_Mutation p.P1574L 0.44 deleterious(0) probably_damaging(0.966) TCGA-D9-A6EC-06 19 42931136 42931136 T G LIPE Silent p.R56R 0.12 TCGA-D9-A6EC-06 19 4294604 4294604 G A TMIGD2 Silent p.G174G 0.38 TCGA-D9-A6EC-06 19 43348735 43348735 G A PSG10P RNA 0.50 TCGA-D9-A6EC-06 19 43371980 43371980 C T PSG1 3'UTR 0.70 TCGA-D9-A6EC-06 19 43372980 43372980 C T PSG1 Missense_Mutation p.G306R 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 43376194 43376194 T C PSG1 Missense_Mutation p.E145G 0.07 tolerated(0.05) benign(0.014) TCGA-D9-A6EC-06 19 43411960 43411960 C T PSG6 Silent p.R251R 0.21 TCGA-D9-A6EC-06 19 43689011 43689011 C T PSG5 Missense_Mutation p.G118E 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 43689235 43689235 G A PSG5 Silent p.P43P 0.38 TCGA-D9-A6EC-06 19 43697449 43697449 G A PSG4 3'UTR 0.39 TCGA-D9-A6EC-06 19 43763093 43763093 T A PSG9 Nonsense_Mutation p.R302* 0.15 TCGA-D9-A6EC-06 19 43920619 43920619 C T TEX101 Silent p.I119I 0.49 TCGA-D9-A6EC-06 19 43979534 43979534 G A PHLDB3 3'UTR 0.43 TCGA-D9-A6EC-06 19 4409389 4409389 A C CHAF1A Missense_Mutation p.D198A 0.13 tolerated_low_confidence(0.75) unknown(0) TCGA-D9-A6EC-06 19 44099551 44099551 T C IRGQ Intron 0.31 TCGA-D9-A6EC-06 19 44128288 44128288 G A CADM4 Silent p.V345V 0.19 TCGA-D9-A6EC-06 19 44159684 44159684 G A PLAUR Missense_Mutation p.L172F 0.45 tolerated(0.08) probably_damaging(0.985) TCGA-D9-A6EC-06 19 44223121 44223121 C T IRGC Silent p.F137F 0.30 TCGA-D9-A6EC-06 19 44514759 44514759 C T ZNF230 Missense_Mutation p.H190Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 44570867 44570867 A C ZNF223 Missense_Mutation p.S296R 0.26 deleterious(0.05) possibly_damaging(0.827) TCGA-D9-A6EC-06 19 44611808 44611808 C T ZNF224 Missense_Mutation p.L499F 0.30 tolerated(0.2) probably_damaging(0.991) TCGA-D9-A6EC-06 19 44792231 44792231 G A ZNF235 Missense_Mutation p.H453Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 19 45004277 45004277 C T ZNF180 Missense_Mutation p.G6R 0.38 tolerated_low_confidence(0.07) benign(0.005) TCGA-D9-A6EC-06 19 45017003 45017003 C T CEACAM20 RNA 0.50 TCGA-D9-A6EC-06 19 4529808 4529808 T G PLIN5 Missense_Mutation p.Q109H 0.22 deleterious(0.01) possibly_damaging(0.834) TCGA-D9-A6EC-06 19 4537887 4537887 G A LRG1 3'UTR 0.48 TCGA-D9-A6EC-06 19 4544397 4544397 C T SEMA6B Missense_Mutation p.R628Q 0.21 tolerated(0.24) benign(0.026) TCGA-D9-A6EC-06 19 45494166 45494166 C T CLPTM1 Missense_Mutation p.S461F 0.47 deleterious(0) benign(0.209) TCGA-D9-A6EC-06 19 45496105 45496105 G A CLPTM1 Missense_Mutation p.E654K 0.65 tolerated(0.51) unknown(0) TCGA-D9-A6EC-06 19 45716581 45716581 C T EXOC3L2 Missense_Mutation p.G326S 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 45821198 45821198 T C CKM Missense_Mutation p.D78G 0.09 deleterious(0.04) benign(0.363) TCGA-D9-A6EC-06 19 45898936 45898936 G A PPP1R13L Missense_Mutation p.P371L 0.67 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 45992234 45992234 C T RTN2 Missense_Mutation p.D418N 0.43 deleterious(0.02) possibly_damaging(0.758) TCGA-D9-A6EC-06 19 46032600 46032600 T C OPA3 Missense_Mutation p.E86G 0.05 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 46216458 46216458 T C FBXO46 Missense_Mutation p.E99G 0.19 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 19 46417819 46417819 C T NANOS2 Missense_Mutation p.G45R 0.23 tolerated(0.4) benign(0.004) TCGA-D9-A6EC-06 19 46417820 46417820 C T NANOS2 Silent p.L44L 0.23 TCGA-D9-A6EC-06 19 47282031 47282031 A G SLC1A5 Missense_Mutation p.V320A 0.11 deleterious(0.01) possibly_damaging(0.626) TCGA-D9-A6EC-06 19 47544311 47544311 C T NPAS1 Missense_Mutation p.S382F 0.48 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 47845030 47845030 A C C5AR2 Missense_Mutation p.K325T 0.29 tolerated(0.4) benign(0.003) TCGA-D9-A6EC-06 19 47876067 47876067 C T DHX34 Missense_Mutation p.P617S 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 48183920 48183920 T C GLTSCR1 Missense_Mutation p.L498P 0.17 unknown(0) TCGA-D9-A6EC-06 19 48229100 48229100 C T EHD2 Silent p.F178F 0.29 TCGA-D9-A6EC-06 19 48305469 48305469 C T TPRX1 Missense_Mutation p.G267S 0.48 tolerated(0.18) unknown(0) TCGA-D9-A6EC-06 19 48343043 48343043 C T CRX Missense_Mutation p.P240L 0.47 tolerated(0.25) possibly_damaging(0.881) TCGA-D9-A6EC-06 19 48343158 48343158 C T CRX Silent p.F278F 0.40 TCGA-D9-A6EC-06 19 48374661 48374661 G A SULT2A1 3'UTR 0.48 TCGA-D9-A6EC-06 19 48547127 48547127 T G CABP5 Missense_Mutation p.E18A 0.22 tolerated(0.49) benign(0.023) TCGA-D9-A6EC-06 19 48657218 48657218 T G LIG1 Missense_Mutation p.K126T 0.17 deleterious(0) possibly_damaging(0.662) TCGA-D9-A6EC-06 19 48800166 48800166 G A CCDC114 3'UTR 0.75 TCGA-D9-A6EC-06 19 48800167 48800167 A T CCDC114 3'UTR 0.75 TCGA-D9-A6EC-06 19 48908214 48908214 C T GRIN2D Missense_Mutation p.A230V 0.50 tolerated(0.08) possibly_damaging(0.504) TCGA-D9-A6EC-06 19 48923052 48923052 C T GRIN2D Missense_Mutation p.S691F 0.52 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 19 48956005 48956005 C T GRWD1 Missense_Mutation p.P355L 0.40 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 19 48956006 48956006 C T GRWD1 Silent p.P355P 0.40 TCGA-D9-A6EC-06 19 49013283 49013283 A T LMTK3 Missense_Mutation p.S149T 0.18 benign(0.078) TCGA-D9-A6EC-06 19 49013730 49013730 C T LMTK3 Missense_Mutation p.D95N 0.40 benign(0.245) TCGA-D9-A6EC-06 19 49104392 49104392 G A FAM83E Missense_Mutation p.R471W 0.41 tolerated_low_confidence(0.11) benign(0.001) TCGA-D9-A6EC-06 19 49122433 49122433 G A RPL18 5'UTR 0.46 TCGA-D9-A6EC-06 19 49227705 49227705 G A RASIP1 Silent p.L811L 0.50 TCGA-D9-A6EC-06 19 49238616 49238616 T G RASIP1 Missense_Mutation p.Q339P 0.22 tolerated(0.25) benign(0.425) TCGA-D9-A6EC-06 19 4929424 4929424 C T MIR4747 5'Flank 0.55 TCGA-D9-A6EC-06 19 49392824 49392824 C T TULP2 Missense_Mutation p.M193I 0.38 tolerated(0.5) benign(0.021) TCGA-D9-A6EC-06 19 49496381 49496381 G A GYS1 5'UTR 0.38 TCGA-D9-A6EC-06 19 49496382 49496382 A G GYS1 5'UTR 0.37 TCGA-D9-A6EC-06 19 49548310 49548310 C T CGB5 Missense_Mutation p.S86F 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 19 49564675 49564675 G A NTF4 Nonsense_Mutation p.R194* 0.40 TCGA-D9-A6EC-06 19 49838770 49838770 A G CD37 5'UTR 0.11 TCGA-D9-A6EC-06 19 50098088 50098088 T C PRR12 Missense_Mutation p.S166P 0.11 possibly_damaging(0.504) TCGA-D9-A6EC-06 19 50099984 50099984 C T PRR12 Missense_Mutation p.P798S 0.71 possibly_damaging(0.803) TCGA-D9-A6EC-06 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.42 TCGA-D9-A6EC-06 19 50208303 50208303 C T CPT1C Missense_Mutation p.R271C 0.42 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EC-06 19 50247564 50247564 G A TSKS Nonsense_Mutation p.Q429* 0.54 TCGA-D9-A6EC-06 19 50265359 50265359 T C TSKS Missense_Mutation p.T101A 0.30 deleterious(0.05) benign(0.442) TCGA-D9-A6EC-06 19 50380918 50380918 G A AKT1S1 5'UTR 0.58 TCGA-D9-A6EC-06 19 50411752 50411752 T C NUP62 Missense_Mutation p.E438G 0.16 deleterious(0.03) benign(0.167) TCGA-D9-A6EC-06 19 50411768 50411768 T G NUP62 Missense_Mutation p.T433P 0.07 deleterious(0) probably_damaging(0.943) TCGA-D9-A6EC-06 19 50548827 50548827 A G ZNF473 Missense_Mutation p.E376G 0.10 deleterious(0.01) probably_damaging(0.913) TCGA-D9-A6EC-06 19 50713798 50713798 C G MYH14 Missense_Mutation p.P59R 0.50 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 19 50823907 50823907 G A KCNC3 Nonsense_Mutation p.R705* 0.47 TCGA-D9-A6EC-06 19 50923208 50923208 A G SPIB Missense_Mutation p.D10G 0.29 deleterious(0.01) benign(0.002) TCGA-D9-A6EC-06 19 50945486 50945486 A C MYBPC2 Missense_Mutation p.K273T 0.23 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 19 51022175 51022175 T C LRRC4B Silent p.V265V 0.08 TCGA-D9-A6EC-06 19 51133165 51133165 G A SYT3 Missense_Mutation p.S313L 0.40 tolerated(0.35) benign(0.161) TCGA-D9-A6EC-06 19 51170694 51170694 C T SHANK1 Missense_Mutation p.R1508K 0.62 unknown(0) TCGA-D9-A6EC-06 19 51171490 51171490 C T SHANK1 Missense_Mutation p.E1243K 0.53 unknown(0) TCGA-D9-A6EC-06 19 51171491 51171491 C T SHANK1 Silent p.R1242R 0.53 TCGA-D9-A6EC-06 19 51201137 51201137 C T SHANK1 Silent p.L608L 0.38 TCGA-D9-A6EC-06 19 51295410 51295410 G A ACPT Silent p.E177E 0.44 TCGA-D9-A6EC-06 19 51362857 51362857 G A KLK3 Intron 0.43 TCGA-D9-A6EC-06 19 51363230 51363230 T C KLK3 Silent p.G211G 0.21 TCGA-D9-A6EC-06 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.39 tolerated(0.21) benign(0.065) TCGA-D9-A6EC-06 19 51628585 51628585 C T SIGLEC9 Silent p.F118F 0.55 TCGA-D9-A6EC-06 19 51650072 51650072 C T SIGLEC7 Silent p.A363A 0.16 TCGA-D9-A6EC-06 19 51728527 51728527 G A CD33 Missense_Mutation p.V31I 0.50 deleterious(0) probably_damaging(0.931) TCGA-D9-A6EC-06 19 51770684 51770684 G A SIGLECL1 Silent p.K156K 0.47 TCGA-D9-A6EC-06 19 51875861 51875861 G A NKG7 5'UTR 0.44 TCGA-D9-A6EC-06 19 51883809 51883809 G A LIM2 Missense_Mutation p.S179F 0.48 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 51983807 51983807 G A CEACAM18 Silent p.R152R 0.42 TCGA-D9-A6EC-06 19 51984696 51984696 G A CEACAM18 Silent p.E211E 0.45 TCGA-D9-A6EC-06 19 52033984 52033984 G A SIGLEC6 Silent p.F219F 0.53 TCGA-D9-A6EC-06 19 52131170 52131170 C T SIGLEC5 Missense_Mutation p.R305K 0.39 tolerated(0.16) benign(0.103) TCGA-D9-A6EC-06 19 52326998 52326998 G A FPR3 5'UTR 0.10 TCGA-D9-A6EC-06 19 52394272 52394272 G C ZNF649 Missense_Mutation p.P373A 0.29 deleterious(0) probably_damaging(0.944) TCGA-D9-A6EC-06 19 52588098 52588098 T C ZNF841 5'UTR 0.29 TCGA-D9-A6EC-06 19 52869979 52869979 C T ZNF610 Missense_Mutation p.H450Y 0.32 deleterious(0.02) probably_damaging(0.973) TCGA-D9-A6EC-06 19 52919732 52919732 C T ZNF528 Missense_Mutation p.H543Y 0.59 deleterious(0) possibly_damaging(0.76) TCGA-D9-A6EC-06 19 52941185 52941185 C T ZNF534 Missense_Mutation p.H171Y 0.22 tolerated(0.3) possibly_damaging(0.727) TCGA-D9-A6EC-06 19 53005132 53005132 G A ZNF578 Missense_Mutation p.G12R 0.15 tolerated(0.31) probably_damaging(0.998) TCGA-D9-A6EC-06 19 53086301 53086301 A C ZNF701 Missense_Mutation p.E396A 0.15 deleterious(0.02) benign(0.202) TCGA-D9-A6EC-06 19 53086690 53086690 C T ZNF701 Missense_Mutation p.H526Y 0.26 deleterious(0.01) benign(0.005) TCGA-D9-A6EC-06 19 53270404 53270404 T G ZNF600 Missense_Mutation p.K202T 0.09 tolerated(0.12) benign(0.396) TCGA-D9-A6EC-06 19 53303367 53303367 T - ZNF28 Frame_Shift_Del p.K577Nfs*47 0.10 TCGA-D9-A6EC-06 19 53573104 53573104 T C ZNF160 Missense_Mutation p.Q228R 0.29 tolerated(0.14) benign(0) TCGA-D9-A6EC-06 19 53612366 53612366 C T ZNF415 Missense_Mutation p.R311Q 0.28 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 19 53669479 53669479 G A ZNF665 Silent p.F88F 0.28 TCGA-D9-A6EC-06 19 53754791 53754791 G A ZNF677 Nonsense_Mutation p.Q5* 0.71 TCGA-D9-A6EC-06 19 53762807 53762807 G A VN1R2 Silent p.R393R 0.12 TCGA-D9-A6EC-06 19 53913821 53913821 C T ZNF765 3'UTR 0.23 TCGA-D9-A6EC-06 19 53994421 53994421 C T ZNF813 Missense_Mutation p.S312L 0.11 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 19 54216624 54216624 G A MIR519D RNA 0.11 TCGA-D9-A6EC-06 19 54228756 54228756 C T MIR516B2 RNA 0.31 TCGA-D9-A6EC-06 19 54314056 54314056 G A NLRP12 Missense_Mutation p.P286L 0.61 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 19 54314133 54314133 C T NLRP12 Silent p.T260T 0.35 TCGA-D9-A6EC-06 19 54401274 54401274 C T PRKCG Missense_Mutation p.P334L 0.25 tolerated(0.26) benign(0) TCGA-D9-A6EC-06 19 54407995 54407995 G A PRKCG Missense_Mutation p.G588E 0.16 deleterious(0.02) possibly_damaging(0.89) TCGA-D9-A6EC-06 19 54496064 54496064 C T CACNG6 5'UTR 0.61 TCGA-D9-A6EC-06 19 54515502 54515502 C T CACNG6 3'UTR 0.17 TCGA-D9-A6EC-06 19 5456044 5456044 A C ZNRF4 Missense_Mutation p.E181A 0.25 tolerated(0.38) benign(0.048) TCGA-D9-A6EC-06 19 54803699 54803699 C T LILRA3 Missense_Mutation p.G42E 0.95 tolerated(0.06) probably_damaging(0.952) TCGA-D9-A6EC-06 19 54822733 54822733 G A LILRA5 Silent p.I221I 0.37 TCGA-D9-A6EC-06 19 54822971 54822971 G A LILRA5 Missense_Mutation p.P142L 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 54844841 54844841 C T LILRA4 3'UTR 0.35 TCGA-D9-A6EC-06 19 54866791 54866791 C T LAIR1 3'UTR 0.30 TCGA-D9-A6EC-06 19 55143144 55143144 C T LILRB1 Silent p.I88I 0.35 TCGA-D9-A6EC-06 19 55146164 55146164 T A LILRB1 Missense_Mutation p.L479H 0.11 deleterious(0.01) benign(0.132) TCGA-D9-A6EC-06 19 55175726 55175726 C T LILRB4 Missense_Mutation p.P149S 0.30 tolerated(0.78) benign(0.127) TCGA-D9-A6EC-06 19 55301585 55301585 T C CTB-61M7.1 RNA 0.09 TCGA-D9-A6EC-06 19 55350941 55350941 G A KIR2DS4 Silent p.E143E 0.62 TCGA-D9-A6EC-06 19 55362682 55362682 C T KIR3DL2 Silent p.F14F 0.42 TCGA-D9-A6EC-06 19 55450446 55450446 C A NLRP7 Nonsense_Mutation p.E581* 0.34 TCGA-D9-A6EC-06 19 55697704 55697704 G A PTPRH Silent p.F889F 0.32 TCGA-D9-A6EC-06 19 55789075 55789075 T C HSPBP1 Missense_Mutation p.Q117R 0.17 tolerated(0.42) benign(0.163) TCGA-D9-A6EC-06 19 56172554 56172554 A T U2AF2 Missense_Mutation p.E162V 0.11 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 19 56174988 56174988 A G U2AF2 Missense_Mutation p.E207G 0.04 deleterious(0) probably_damaging(0.954) TCGA-D9-A6EC-06 19 56321640 56321640 A C NLRP11 Silent p.T112T 0.09 TCGA-D9-A6EC-06 19 56390212 56390212 C T NLRP4 Missense_Mutation p.L917F 0.54 tolerated(0.44) benign(0.253) TCGA-D9-A6EC-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.70 deleterious(0) probably_damaging(0.918) TCGA-D9-A6EC-06 19 56485124 56485124 G A NLRP8 Missense_Mutation p.D881N 0.32 deleterious(0.05) probably_damaging(0.991) TCGA-D9-A6EC-06 19 56515325 56515325 G A NLRP5 Silent p.E102E 0.15 TCGA-D9-A6EC-06 19 56539715 56539715 A G NLRP5 Missense_Mutation p.S706G 0.12 tolerated(0.82) benign(0) TCGA-D9-A6EC-06 19 56572882 56572882 G A NLRP5 Nonsense_Mutation p.W1197* 0.66 TCGA-D9-A6EC-06 19 56600429 56600429 G A ZNF787 Missense_Mutation p.P38S 0.18 tolerated(0.17) benign(0.007) TCGA-D9-A6EC-06 19 56600430 56600430 G A ZNF787 Silent p.V37V 0.19 TCGA-D9-A6EC-06 19 56953383 56953383 C T ZNF667 Silent p.E327E 0.30 TCGA-D9-A6EC-06 19 57132702 57132702 C T ZNF71 Missense_Mutation p.S16F 0.27 deleterious(0) benign(0.125) TCGA-D9-A6EC-06 19 57133869 57133869 C T ZNF71 Missense_Mutation p.T405I 0.61 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 19 57175048 57175048 G A ZNF835 Missense_Mutation p.P507S 0.33 tolerated_low_confidence(0.5) benign(0.003) TCGA-D9-A6EC-06 19 57175151 57175151 C T ZNF835 Silent p.K472K 0.12 TCGA-D9-A6EC-06 19 57176462 57176462 T C ZNF835 Silent p.P35P 0.11 TCGA-D9-A6EC-06 19 57328102 57328102 C T PEG3 Missense_Mutation p.E570K 0.32 deleterious(0.03) benign(0) TCGA-D9-A6EC-06 19 57335673 57335673 G A PEG3 Silent p.L117L 0.33 TCGA-D9-A6EC-06 19 5739354 5739354 T G CATSPERD Silent p.V159V 0.31 TCGA-D9-A6EC-06 19 57640501 57640501 C T USP29 Missense_Mutation p.S153L 0.29 tolerated(0.44) probably_damaging(0.922) TCGA-D9-A6EC-06 19 57641516 57641516 G A USP29 Silent p.Q491Q 0.27 TCGA-D9-A6EC-06 19 57646462 57646462 C T ZIM3 Missense_Mutation p.G415R 0.12 tolerated(0.17) benign(0.029) TCGA-D9-A6EC-06 19 57647197 57647197 T G ZIM3 Missense_Mutation p.N170H 0.34 tolerated(0.36) benign(0.193) TCGA-D9-A6EC-06 19 57744955 57744955 C T AURKC Missense_Mutation p.S188F 0.24 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 57840033 57840033 G T ZNF543 Silent p.G401G 0.29 TCGA-D9-A6EC-06 19 57967176 57967176 G A VN1R1 Missense_Mutation p.P227S 0.26 tolerated(0.44) benign(0.065) TCGA-D9-A6EC-06 19 57984573 57984573 G A ZNF772 3'UTR 0.22 TCGA-D9-A6EC-06 19 58101420 58101420 C G ZIK1 Missense_Mutation p.Q81E 0.17 tolerated(0.08) benign(0.037) TCGA-D9-A6EC-06 19 58152773 58152773 C T ZNF211 Missense_Mutation p.H372Y 0.31 deleterious(0) probably_damaging(0.972) TCGA-D9-A6EC-06 19 58190344 58190344 G A ZSCAN4 3'UTR 0.19 TCGA-D9-A6EC-06 19 58438057 58438057 G A ZNF418 Missense_Mutation p.R498C 0.30 tolerated(0.21) benign(0.319) TCGA-D9-A6EC-06 19 58452723 58452723 G A ZNF256 Missense_Mutation p.H485Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 19 58490386 58490386 G A ZNF606 Silent p.A554A 0.60 TCGA-D9-A6EC-06 19 58579458 58579458 C A ZNF135 Missense_Mutation p.P560T 0.34 tolerated(0.39) probably_damaging(0.976) TCGA-D9-A6EC-06 19 58579459 58579459 C T ZNF135 Missense_Mutation p.P560L 0.33 tolerated(0.65) probably_damaging(0.976) TCGA-D9-A6EC-06 19 58579463 58579463 C T ZNF135 Silent p.L561L 0.63 TCGA-D9-A6EC-06 19 58600167 58600167 A C ZSCAN18 Missense_Mutation p.I203M 0.14 tolerated(0.26) benign(0.019) TCGA-D9-A6EC-06 19 58640556 58640556 G A ZNF329 Silent p.P105P 0.29 TCGA-D9-A6EC-06 19 5867202 5867202 A C FUT5 Missense_Mutation p.F179V 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 19 58723880 58723880 C T ZNF274 Missense_Mutation p.P444S 0.61 tolerated(0.42) benign(0.022) TCGA-D9-A6EC-06 19 58962970 58962970 G A ZNF324B 5'Flank 0.26 TCGA-D9-A6EC-06 19 59074699 59074699 C T MZF1 Silent p.Q315Q 0.31 TCGA-D9-A6EC-06 19 5908948 5908948 A C VMAC Missense_Mutation p.E102A 0.16 tolerated(0.06) benign(0.053) TCGA-D9-A6EC-06 19 5957967 5957967 G A RANBP3 Missense_Mutation p.P14S 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.735) TCGA-D9-A6EC-06 19 6467968 6467968 G A DENND1C Silent p.V651V 0.38 TCGA-D9-A6EC-06 19 6468070 6468070 G A DENND1C Silent p.P617P 0.54 TCGA-D9-A6EC-06 19 6712406 6712406 C T C3 Silent p.T377T 0.42 TCGA-D9-A6EC-06 19 6750052 6750052 T G TRIP10 Missense_Mutation p.L401R 0.17 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 19 6926553 6926553 G A EMR1 Silent p.P721P 0.47 TCGA-D9-A6EC-06 19 6928204 6928204 A C EMR1 Silent p.P757P 0.26 TCGA-D9-A6EC-06 19 7117075 7117075 G A INSR Missense_Mutation p.P1381S 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 19 7267765 7267765 G A INSR Silent p.L81L 0.60 TCGA-D9-A6EC-06 19 757067 757067 A G MISP Missense_Mutation p.S41G 0.26 tolerated(0.37) benign(0.015) TCGA-D9-A6EC-06 19 7614810 7614810 C T PNPLA6 Silent p.F551F 0.21 TCGA-D9-A6EC-06 19 7620634 7620634 C T PNPLA6 Silent p.A1036A 0.41 TCGA-D9-A6EC-06 19 763576 763576 G A MISP Missense_Mutation p.E676K 0.52 deleterious(0.01) probably_damaging(0.923) TCGA-D9-A6EC-06 19 7676712 7676712 A G CAMSAP3 Missense_Mutation p.T472A 0.18 tolerated(0.5) benign(0.004) TCGA-D9-A6EC-06 19 7743386 7743386 C T C19orf59 Missense_Mutation p.S128F 0.54 tolerated(0.31) benign(0.005) TCGA-D9-A6EC-06 19 7831056 7831056 A C CLEC4M Missense_Mutation p.Q249H 0.18 deleterious(0.01) benign(0.051) TCGA-D9-A6EC-06 19 7963620 7963620 A C LRRC8E Missense_Mutation p.Q71H 0.18 tolerated(0.59) benign(0.172) TCGA-D9-A6EC-06 19 805543 805543 C T PTBP1 Missense_Mutation p.P315L 0.41 tolerated(0.06) benign(0.181) TCGA-D9-A6EC-06 19 806546 806546 T G PTBP1 Missense_Mutation p.L370R 0.13 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 19 8152823 8152823 C T FBN3 Missense_Mutation p.E2169K 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-D9-A6EC-06 19 8159395 8159395 T G FBN3 Missense_Mutation p.N1947T 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A6EC-06 19 8194179 8194179 G A FBN3 Silent p.Y705Y 0.52 TCGA-D9-A6EC-06 19 8434176 8434176 G C ANGPTL4 Missense_Mutation p.Q207H 0.35 tolerated(0.12) possibly_damaging(0.878) TCGA-D9-A6EC-06 19 8491502 8491502 T A MARCH2 Silent p.P62P 0.11 TCGA-D9-A6EC-06 19 8563719 8563719 C T PRAM1 Missense_Mutation p.E325K 0.38 tolerated(0.1) benign(0.259) TCGA-D9-A6EC-06 19 8661037 8661037 G A ADAMTS10 Silent p.L419L 0.46 TCGA-D9-A6EC-06 19 8841699 8841699 C T OR2Z1 Silent p.F103F 0.45 TCGA-D9-A6EC-06 19 8997168 8997168 C T MUC16 Silent p.K13676K 0.27 TCGA-D9-A6EC-06 19 8997169 8997169 T A MUC16 Missense_Mutation p.K13676M 0.26 probably_damaging(0.999) TCGA-D9-A6EC-06 19 9000458 9000458 C T MUC16 Missense_Mutation p.R13509K 0.43 possibly_damaging(0.824) TCGA-D9-A6EC-06 19 9006660 9006660 C T MUC16 Silent p.E13196E 0.42 TCGA-D9-A6EC-06 19 9047843 9047843 T A MUC16 Missense_Mutation p.N11263I 0.39 benign(0.016) TCGA-D9-A6EC-06 19 9056480 9056480 C T MUC16 Silent p.E10322E 0.33 TCGA-D9-A6EC-06 19 9058876 9058876 C T MUC16 Missense_Mutation p.E9524K 0.34 unknown(0) TCGA-D9-A6EC-06 19 9059418 9059418 G A MUC16 Missense_Mutation p.S9343L 0.53 unknown(0) TCGA-D9-A6EC-06 19 9061851 9061851 G A MUC16 Missense_Mutation p.S8532L 0.54 unknown(0) TCGA-D9-A6EC-06 19 9062055 9062055 G A MUC16 Missense_Mutation p.P8464L 0.49 unknown(0) TCGA-D9-A6EC-06 19 9063986 9063986 C T MUC16 Silent p.R7820R 0.29 TCGA-D9-A6EC-06 19 9065739 9065739 A T MUC16 Missense_Mutation p.I7236N 0.47 unknown(0) TCGA-D9-A6EC-06 19 9070548 9070548 G A MUC16 Missense_Mutation p.S5633F 0.46 unknown(0) TCGA-D9-A6EC-06 19 9071745 9071745 G A MUC16 Missense_Mutation p.S5234F 0.40 unknown(0) TCGA-D9-A6EC-06 19 9072287 9072287 G A MUC16 Silent p.S5053S 0.38 TCGA-D9-A6EC-06 19 9073623 9073623 G A MUC16 Missense_Mutation p.T4608I 0.57 unknown(0) TCGA-D9-A6EC-06 19 9075829 9075829 C T MUC16 Missense_Mutation p.E3873K 0.15 unknown(0) TCGA-D9-A6EC-06 19 9077847 9077847 G A MUC16 Missense_Mutation p.P3200L 0.49 unknown(0) TCGA-D9-A6EC-06 19 9088521 9088521 C T MUC16 Silent p.R1098R 0.51 TCGA-D9-A6EC-06 19 9090343 9090343 C T MUC16 Missense_Mutation p.G491E 0.26 unknown(0) TCGA-D9-A6EC-06 19 9091810 9091810 A C MUC16 Missense_Mutation p.L2R 0.19 unknown(0) TCGA-D9-A6EC-06 19 9361872 9361872 C T OR7E24 Silent p.S51S 0.51 TCGA-D9-A6EC-06 19 9580358 9580358 G A ZNF560 Silent p.I159I 0.20 TCGA-D9-A6EC-06 19 9968030 9968030 A G OLFM2 Silent p.I163I 0.21 TCGA-D9-A6EC-06 1 10042620 10042620 A T NMNAT1 Missense_Mutation p.Q234L 0.14 tolerated(0.4) benign(0.15) TCGA-D9-A6EC-06 1 103343686 103343686 G A COL11A1 Silent p.I1770I 0.50 TCGA-D9-A6EC-06 1 103348832 103348832 C T COL11A1 Missense_Mutation p.G1632R 0.41 unknown(0) TCGA-D9-A6EC-06 1 103352492 103352492 C T COL11A1 Missense_Mutation p.E1577K 0.50 unknown(0) TCGA-D9-A6EC-06 1 103364265 103364265 C T COL11A1 Missense_Mutation p.G1402E 0.57 unknown(0) TCGA-D9-A6EC-06 1 103428225 103428225 C T COL11A1 Missense_Mutation p.G1003E 0.23 unknown(0) TCGA-D9-A6EC-06 1 10473273 10473273 C T PGD Missense_Mutation p.S270F 0.48 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 1 10477538 10477538 A C PGD Missense_Mutation p.M361L 0.07 tolerated(0.12) possibly_damaging(0.876) TCGA-D9-A6EC-06 1 10521636 10521636 A G DFFA Silent p.L303L 0.23 TCGA-D9-A6EC-06 1 10703308 10703308 G A CASZ1 Missense_Mutation p.S1310F 0.30 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 1 107867518 107867518 G A NTNG1 Silent p.A287A 0.57 TCGA-D9-A6EC-06 1 108309157 108309157 G A VAV3 Missense_Mutation p.H245Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 109198284 109198284 T G HENMT1 Silent p.R63R 0.14 TCGA-D9-A6EC-06 1 109801546 109801546 C T CELSR2 Missense_Mutation p.P1268L 0.50 deleterious(0.01) possibly_damaging(0.852) TCGA-D9-A6EC-06 1 109849626 109849626 C T MYBPHL 5'UTR 0.36 TCGA-D9-A6EC-06 1 109857339 109857339 A C SORT1 Missense_Mutation p.V771G 0.10 tolerated(0.14) benign(0.299) TCGA-D9-A6EC-06 1 109944525 109944525 A C PSMA5 3'UTR 0.13 TCGA-D9-A6EC-06 1 110031606 110031606 C T ATXN7L2 Silent p.L307L 0.40 TCGA-D9-A6EC-06 1 110038901 110038901 C T CYB561D1 3'UTR 0.55 TCGA-D9-A6EC-06 1 110050840 110050840 A T AMIGO1 Missense_Mutation p.L232Q 0.15 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 1 11007717 11007717 G A C1orf127 3'UTR 0.27 TCGA-D9-A6EC-06 1 110255712 110255712 G A GSTM5 Intron 0.31 TCGA-D9-A6EC-06 1 110260146 110260146 C T GSTM5 3'UTR 0.20 TCGA-D9-A6EC-06 1 110294300 110294300 C T EPS8L3 Silent p.G514G 0.44 TCGA-D9-A6EC-06 1 110466069 110466069 G A CSF1 Missense_Mutation p.G276S 0.13 tolerated(0.48) benign(0.026) TCGA-D9-A6EC-06 1 110582056 110582056 C T STRIP1 Missense_Mutation p.S167F 0.21 tolerated(0.69) benign(0.001) TCGA-D9-A6EC-06 1 110582057 110582057 C T STRIP1 Silent p.S167S 0.23 TCGA-D9-A6EC-06 1 110603659 110603659 T C ALX3 Missense_Mutation p.Q243R 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-D9-A6EC-06 1 110734613 110734613 C T SLC6A17 Missense_Mutation p.P295L 0.41 tolerated(0.14) benign(0.424) TCGA-D9-A6EC-06 1 110740162 110740162 G A SLC6A17 Missense_Mutation p.A586T 0.53 deleterious(0.04) possibly_damaging(0.718) TCGA-D9-A6EC-06 1 111146204 111146204 T G KCNA2 Missense_Mutation p.T401P 0.23 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 111439345 111439345 G A CD53 Missense_Mutation p.R165Q 0.45 tolerated(0.67) benign(0) TCGA-D9-A6EC-06 1 1119460 1119460 T G TTLL10 Missense_Mutation p.L417V 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 111964188 111964188 G A OVGP1 Missense_Mutation p.S239L 0.46 tolerated(0.2) benign(0.33) TCGA-D9-A6EC-06 1 112031414 112031414 C T ADORA3 Silent p.T230T 0.55 TCGA-D9-A6EC-06 1 113197147 113197147 A C CAPZA1 Missense_Mutation p.I94L 0.23 tolerated(0.44) benign(0.006) TCGA-D9-A6EC-06 1 114165484 114165484 C T MAGI3 Nonsense_Mutation p.R410* 0.40 TCGA-D9-A6EC-06 1 114376966 114376966 T G PTPN22 Missense_Mutation p.K664Q 0.19 tolerated(0.54) benign(0.033) TCGA-D9-A6EC-06 1 114438613 114438613 G A AP4B1 Missense_Mutation p.R520C 0.51 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 114515828 114515828 T C HIPK1 Silent p.A1109A 0.08 TCGA-D9-A6EC-06 1 115221038 115221038 C T AMPD1 Silent p.E369E 0.42 TCGA-D9-A6EC-06 1 11584058 11584058 A C PTCHD2 Missense_Mutation p.K808Q 0.14 tolerated(0.23) benign(0.125) TCGA-D9-A6EC-06 1 11589643 11589643 C T PTCHD2 Silent p.P943P 0.49 TCGA-D9-A6EC-06 1 116225098 116225098 T A VANGL1 Missense_Mutation p.L309Q 0.11 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 117307203 117307203 G A CD2 Silent p.R237R 0.18 TCGA-D9-A6EC-06 1 117626729 117626729 A G TTF2 Missense_Mutation p.N665D 0.15 tolerated(0.31) benign(0.008) TCGA-D9-A6EC-06 1 117631542 117631542 C T TTF2 Silent p.A760A 0.21 TCGA-D9-A6EC-06 1 117644179 117644179 T G TTF2 3'UTR 0.08 TCGA-D9-A6EC-06 1 117699601 117699601 A C VTCN1 Intron 0.09 TCGA-D9-A6EC-06 1 118165503 118165503 A G FAM46C Missense_Mutation p.S5G 0.16 tolerated(0.38) benign(0) TCGA-D9-A6EC-06 1 118494982 118494982 A G WDR3 Missense_Mutation p.K656R 0.08 tolerated(0.11) benign(0.015) TCGA-D9-A6EC-06 1 119428052 119428052 G A TBX15 Missense_Mutation p.S265F 0.46 deleterious(0.03) probably_damaging(0.991) TCGA-D9-A6EC-06 1 119958145 119958145 G A HSD3B2 Missense_Mutation p.D35N 0.57 deleterious(0.01) probably_damaging(0.978) TCGA-D9-A6EC-06 1 119965313 119965313 C T HSD3B2 3'UTR 0.78 TCGA-D9-A6EC-06 1 120057022 120057022 T G HSD3B1 Nonsense_Mutation p.Y292* 0.13 TCGA-D9-A6EC-06 1 120057222 120057222 C T HSD3B1 Missense_Mutation p.S359F 0.42 deleterious(0.01) benign(0.159) TCGA-D9-A6EC-06 1 120337200 120337200 G A REG4 3'UTR 0.48 TCGA-D9-A6EC-06 1 120436814 120436814 A G ADAM30 Silent p.L716L 0.20 TCGA-D9-A6EC-06 1 120457886 120457886 T C NOTCH2 3'UTR 0.17 TCGA-D9-A6EC-06 1 120928394 120928394 C T FCGR1B Intron 0.58 TCGA-D9-A6EC-06 1 12266961 12266961 T G TNFRSF1B Missense_Mutation p.S424A 0.09 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 1 12628378 12628378 C T DHRS3 Silent p.G300G 0.45 TCGA-D9-A6EC-06 1 12726173 12726173 T C AADACL4 Silent p.A217A 0.14 TCGA-D9-A6EC-06 1 12726765 12726765 G A AADACL4 3'UTR 0.53 TCGA-D9-A6EC-06 1 12815735 12815735 C T C1orf158 Missense_Mutation p.S66F 0.13 tolerated(0.19) possibly_damaging(0.819) TCGA-D9-A6EC-06 1 12819255 12819255 A C C1orf158 Missense_Mutation p.K80Q 0.05 tolerated(0.48) possibly_damaging(0.905) TCGA-D9-A6EC-06 1 12837298 12837298 T C PRAMEF12 Silent p.P336P 0.08 TCGA-D9-A6EC-06 1 12853410 12853410 C T PRAMEF1 Silent p.L12L 0.48 TCGA-D9-A6EC-06 1 12887190 12887190 G A PRAMEF11 Nonsense_Mutation p.Q223* 0.29 TCGA-D9-A6EC-06 1 12907460 12907460 G A HNRNPCL1 Missense_Mutation p.S228F 0.59 deleterious(0.04) probably_damaging(0.999) TCGA-D9-A6EC-06 1 12907539 12907539 C T HNRNPCL1 Missense_Mutation p.E202K 0.45 deleterious(0.02) benign(0.241) TCGA-D9-A6EC-06 1 12941904 12941904 A G PRAMEF4 Missense_Mutation p.C216R 0.10 deleterious(0.03) benign(0.039) TCGA-D9-A6EC-06 1 12954577 12954577 C T PRAMEF10 Missense_Mutation p.E236K 0.52 tolerated(0.87) benign(0) TCGA-D9-A6EC-06 1 13743091 13743091 C T PRAMEF20 Missense_Mutation p.R94C 0.54 tolerated(0.07) benign(0.011) TCGA-D9-A6EC-06 1 144882634 144882634 C T PDE4DIP Missense_Mutation p.E1129K 0.25 deleterious(0.03) possibly_damaging(0.782) TCGA-D9-A6EC-06 1 144886175 144886175 T G PDE4DIP Missense_Mutation p.K1020T 0.09 deleterious(0) probably_damaging(0.959) TCGA-D9-A6EC-06 1 144918878 144918878 G A PDE4DIP Silent p.I436I 0.20 TCGA-D9-A6EC-06 1 145368504 145368504 T G NBPF10 Missense_Mutation p.C3494W 0.05 possibly_damaging(0.772) TCGA-D9-A6EC-06 1 145416641 145416641 G A HFE2 Missense_Mutation p.R329Q 0.60 tolerated(0.45) benign(0.184) TCGA-D9-A6EC-06 1 145507711 145507711 C T RBM8A Silent p.F15F 0.56 TCGA-D9-A6EC-06 1 145538011 145538011 A T ITGA10 Missense_Mutation p.E897V 0.15 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 145580324 145580324 T - PIAS3 Splice_Site p.X268_splice 0.11 TCGA-D9-A6EC-06 1 145601612 145601612 T A POLR3C Missense_Mutation p.E265V 0.28 deleterious(0) probably_damaging(0.933) TCGA-D9-A6EC-06 1 145699064 145699064 A G CD160 Silent p.L143L 0.18 TCGA-D9-A6EC-06 1 145764898 145764898 A G GPR89A 3'UTR 0.43 TCGA-D9-A6EC-06 1 146731507 146731507 C T CHD1L Missense_Mutation p.L171F 0.41 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 1 147091875 147091875 G A BCL9 Silent p.E638E 0.39 TCGA-D9-A6EC-06 1 147381109 147381109 G A GJA8 Missense_Mutation p.E343K 0.67 tolerated(0.16) benign(0.225) TCGA-D9-A6EC-06 1 147381230 147381230 A C GJA8 Missense_Mutation p.K383T 0.33 tolerated(0.19) benign(0.086) TCGA-D9-A6EC-06 1 148346687 148346687 A C NBPF20 Missense_Mutation p.L24V 0.12 benign(0.374) TCGA-D9-A6EC-06 1 149759999 149759999 G A FCGR1A Missense_Mutation p.D129N 0.34 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 1 149760122 149760122 G A FCGR1A Missense_Mutation p.G170S 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-D9-A6EC-06 1 150048344 150048344 A C VPS45 Missense_Mutation p.K108T 0.28 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 1 150237106 150237106 A G CA14 3'UTR 0.55 TCGA-D9-A6EC-06 1 150484002 150484002 A G ECM1 Missense_Mutation p.T287A 0.20 deleterious(0.01) benign(0.047) TCGA-D9-A6EC-06 1 150527983 150527983 A G ADAMTSL4 Missense_Mutation p.Q438R 0.18 tolerated(0.51) probably_damaging(0.98) TCGA-D9-A6EC-06 1 150598177 150598177 G A ENSA Silent p.I113I 0.53 TCGA-D9-A6EC-06 1 150812123 150812123 G A ARNT Missense_Mutation p.H94Y 0.68 deleterious(0) possibly_damaging(0.7) TCGA-D9-A6EC-06 1 150917400 150917400 A T SETDB1 Missense_Mutation p.K319M 0.23 deleterious(0) possibly_damaging(0.861) TCGA-D9-A6EC-06 1 150960647 150960647 G A ANXA9 Missense_Mutation p.A260T 0.55 deleterious(0.02) benign(0.415) TCGA-D9-A6EC-06 1 151146966 151146966 C T TMOD4 Missense_Mutation p.G61R 0.43 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 1 151149321 151149321 T C VPS72 Silent p.P309P 0.13 TCGA-D9-A6EC-06 1 151338852 151338852 G A SELENBP1 Missense_Mutation p.L248F 0.49 tolerated(0.39) benign(0.021) TCGA-D9-A6EC-06 1 151341648 151341648 G A SELENBP1 Silent p.P64P 0.44 TCGA-D9-A6EC-06 1 151491440 151491440 C T CGN Missense_Mutation p.P149S 0.47 tolerated(0.46) benign(0.009) TCGA-D9-A6EC-06 1 151503112 151503112 C T CGN Missense_Mutation p.R821W 0.47 deleterious(0.01) possibly_damaging(0.761) TCGA-D9-A6EC-06 1 151664960 151664960 C T SNX27 Missense_Mutation p.P430L 0.37 deleterious(0.05) possibly_damaging(0.545) TCGA-D9-A6EC-06 1 151752545 151752545 G A TDRKH Silent p.I101I 0.50 TCGA-D9-A6EC-06 1 151773781 151773781 C T LINGO4 Missense_Mutation p.G467E 0.46 deleterious(0.02) possibly_damaging(0.827) TCGA-D9-A6EC-06 1 151779891 151779891 G A RORC 3'UTR 0.52 TCGA-D9-A6EC-06 1 151804202 151804202 C T RORC Silent p.R13R 0.49 TCGA-D9-A6EC-06 1 152057696 152057696 T C TCHHL1 Missense_Mutation p.Q821R 0.24 tolerated(0.13) benign(0.016) TCGA-D9-A6EC-06 1 152058964 152058964 C T TCHHL1 Silent p.E398E 0.55 TCGA-D9-A6EC-06 1 152127799 152127799 T G RPTN Missense_Mutation p.Q592H 0.05 deleterious(0) benign(0.035) TCGA-D9-A6EC-06 1 152188002 152188002 T G HRNR Missense_Mutation p.S2035R 0.04 unknown(0) TCGA-D9-A6EC-06 1 152193693 152193693 C T HRNR Missense_Mutation p.D138N 0.36 possibly_damaging(0.647) TCGA-D9-A6EC-06 1 152279080 152279080 C T FLG Missense_Mutation p.G2761E 0.19 benign(0.343) TCGA-D9-A6EC-06 1 152280316 152280316 C T FLG Missense_Mutation p.G2349E 0.25 probably_damaging(0.982) TCGA-D9-A6EC-06 1 152282593 152282593 T C FLG Missense_Mutation p.Q1590R 0.20 benign(0.227) TCGA-D9-A6EC-06 1 152282962 152282962 C T FLG Missense_Mutation p.G1467E 0.49 probably_damaging(0.931) TCGA-D9-A6EC-06 1 152329730 152329730 G A FLG2 Nonsense_Mutation p.Q178* 0.45 TCGA-D9-A6EC-06 1 152383161 152383161 C T CRNN Missense_Mutation p.E133K 0.48 tolerated(0.07) benign(0.156) TCGA-D9-A6EC-06 1 152488014 152488014 G T CRCT1 Missense_Mutation p.C52F 0.29 unknown(0) TCGA-D9-A6EC-06 1 152733735 152733735 G A KPRP Silent p.Q557Q 0.33 TCGA-D9-A6EC-06 1 152748889 152748889 C T LCE1F Silent p.P14P 0.45 TCGA-D9-A6EC-06 1 152883842 152883842 G A IVL Silent p.L523L 0.53 TCGA-D9-A6EC-06 1 152957797 152957797 G A SPRR1A Missense_Mutation p.E31K 0.43 deleterious(0.03) possibly_damaging(0.621) TCGA-D9-A6EC-06 1 152958046 152958046 G A SPRR1A 3'UTR 0.31 TCGA-D9-A6EC-06 1 153084894 153084894 C T SPRR2F 3'UTR 0.47 TCGA-D9-A6EC-06 1 153410677 153410677 G A S100A7L2 Silent p.F54F 0.42 TCGA-D9-A6EC-06 1 153633784 153633784 A T SNAPIN 3'UTR 0.24 TCGA-D9-A6EC-06 1 153660536 153660536 C T NPR1 Silent p.I752I 0.44 TCGA-D9-A6EC-06 1 153784323 153784323 G A GATAD2B Missense_Mutation p.A511V 0.56 tolerated(0.44) benign(0.002) TCGA-D9-A6EC-06 1 153800502 153800502 T A GATAD2B Missense_Mutation p.S108C 0.21 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 1 153910274 153910274 A C DENND4B Missense_Mutation p.S677R 0.13 deleterious(0) benign(0.046) TCGA-D9-A6EC-06 1 153921837 153921837 T G CRTC2 Missense_Mutation p.K476N 0.20 tolerated(0.5) probably_damaging(0.966) TCGA-D9-A6EC-06 1 153924082 153924082 T C CRTC2 Missense_Mutation p.Q353R 0.18 tolerated(0.07) possibly_damaging(0.885) TCGA-D9-A6EC-06 1 153963240 153963240 T C RPS27 5'UTR 0.49 TCGA-D9-A6EC-06 1 154030625 154030625 T G NUP210L Missense_Mutation p.N1016T 0.08 tolerated(0.98) benign(0.005) TCGA-D9-A6EC-06 1 154091211 154091211 A C NUP210L Missense_Mutation p.L467R 0.09 deleterious(0) probably_damaging(0.931) TCGA-D9-A6EC-06 1 154294473 154294473 C T AQP10 Missense_Mutation p.T57I 0.12 deleterious(0) benign(0.104) TCGA-D9-A6EC-06 1 154516511 154516511 C T TDRD10 Silent p.V192V 0.32 TCGA-D9-A6EC-06 1 154522890 154522890 G A UBE2Q1 3'UTR 0.45 TCGA-D9-A6EC-06 1 154522891 154522891 G A UBE2Q1 3'UTR 0.45 TCGA-D9-A6EC-06 1 154557501 154557501 G A ADAR Silent p.S1154S 0.44 TCGA-D9-A6EC-06 1 154573933 154573933 G C ADAR Silent p.P395P 0.50 TCGA-D9-A6EC-06 1 154938918 154938918 G T SHC1 Missense_Mutation p.F353L 0.49 deleterious(0.02) benign(0.032) TCGA-D9-A6EC-06 1 155106494 155106494 T G EFNA1 Missense_Mutation p.L190R 0.22 deleterious(0) benign(0.429) TCGA-D9-A6EC-06 1 155265516 155265516 C T PKLR Silent p.K105K 0.40 TCGA-D9-A6EC-06 1 155449581 155449581 G A ASH1L Missense_Mutation p.A1027V 0.50 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D9-A6EC-06 1 155640128 155640128 G A YY1AP1 Silent p.F375F 0.47 TCGA-D9-A6EC-06 1 155747457 155747457 G A GON4L Silent p.L683L 0.40 TCGA-D9-A6EC-06 1 155784240 155784240 T C GON4L Missense_Mutation p.S388G 0.12 deleterious(0.02) benign(0.294) TCGA-D9-A6EC-06 1 156146227 156146227 C T SEMA4A Silent p.I575I 0.43 TCGA-D9-A6EC-06 1 156348107 156348107 C T RHBG Missense_Mutation p.S197L 0.46 deleterious(0.03) benign(0.034) TCGA-D9-A6EC-06 1 156376791 156376791 A G C1orf61 Intron 0.16 TCGA-D9-A6EC-06 1 156563839 156563839 C T APOA1BP Missense_Mutation p.P277L 0.16 deleterious(0.04) benign(0.04) TCGA-D9-A6EC-06 1 156616705 156616705 C T BCAN Silent p.R68R 0.46 TCGA-D9-A6EC-06 1 156618406 156618406 A C BCAN Missense_Mutation p.E272D 0.15 tolerated(0.13) probably_damaging(0.984) TCGA-D9-A6EC-06 1 156621282 156621282 C A BCAN Silent p.S366S 0.39 TCGA-D9-A6EC-06 1 156622514 156622514 C A BCAN Missense_Mutation p.A591D 0.51 tolerated(0.1) benign(0.101) TCGA-D9-A6EC-06 1 156622515 156622515 C T BCAN Silent p.A591A 0.56 TCGA-D9-A6EC-06 1 156641513 156641513 T G NES Missense_Mutation p.T823P 0.21 tolerated(0.17) benign(0.016) TCGA-D9-A6EC-06 1 156883246 156883246 G A PEAR1 Missense_Mutation p.D859N 0.53 deleterious(0.01) possibly_damaging(0.628) TCGA-D9-A6EC-06 1 156941527 156941527 A C ARHGEF11 Missense_Mutation p.L222V 0.13 tolerated(0.31) benign(0.421) TCGA-D9-A6EC-06 1 157488244 157488244 G A FCRL5 Silent p.I929I 0.50 TCGA-D9-A6EC-06 1 157512916 157512916 G A FCRL5 Missense_Mutation p.H286Y 0.30 tolerated(0.79) benign(0.433) TCGA-D9-A6EC-06 1 157514226 157514226 G A FCRL5 Missense_Mutation p.L224F 0.44 deleterious(0.01) probably_damaging(0.942) TCGA-D9-A6EC-06 1 157557798 157557798 C T FCRL4 Missense_Mutation p.G140E 0.44 tolerated(0.2) benign(0.072) TCGA-D9-A6EC-06 1 157666905 157666905 G A FCRL3 Intron 0.51 TCGA-D9-A6EC-06 1 157789804 157789804 C T FCRL1 Silent p.L8L 0.20 TCGA-D9-A6EC-06 1 157789812 157789812 A T FCRL1 Missense_Mutation p.L6M 0.15 deleterious_low_confidence(0.03) benign(0.014) TCGA-D9-A6EC-06 1 157804506 157804506 C T CD5L Missense_Mutation p.G137S 0.35 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 1 158259881 158259881 A G CD1C Silent p.L9L 0.14 TCGA-D9-A6EC-06 1 158300629 158300629 G A CD1B Silent p.F95F 0.43 TCGA-D9-A6EC-06 1 158300760 158300760 C T CD1B Missense_Mutation p.D52N 0.47 deleterious(0.03) probably_damaging(0.942) TCGA-D9-A6EC-06 1 158389761 158389761 G A OR10K2 Missense_Mutation p.S299L 0.49 tolerated(0.4) benign(0.005) TCGA-D9-A6EC-06 1 158435546 158435546 C T OR10K1 Silent p.I65I 0.38 TCGA-D9-A6EC-06 1 158435678 158435678 C T OR10K1 Silent p.S109S 0.45 TCGA-D9-A6EC-06 1 158436237 158436237 G A OR10K1 Missense_Mutation p.E296K 0.48 deleterious(0.02) possibly_damaging(0.69) TCGA-D9-A6EC-06 1 158449727 158449727 G A OR10R2 Silent p.Q20Q 0.47 TCGA-D9-A6EC-06 1 158582747 158582747 C T SPTA1 Missense_Mutation p.G2332S 0.43 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 158632721 158632721 G A SPTA1 Silent p.I745I 0.40 TCGA-D9-A6EC-06 1 158647503 158647503 T A SPTA1 Missense_Mutation p.N312Y 0.20 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 1 158724893 158724893 C T OR6K6 Silent p.F96F 0.44 TCGA-D9-A6EC-06 1 159166883 159166883 C T CADM3 Intron 0.17 TCGA-D9-A6EC-06 1 159176178 159176178 C T DARC Missense_Mutation p.P319S 0.52 tolerated(0.18) benign(0.082) TCGA-D9-A6EC-06 1 159558180 159558180 G A APCS Silent p.E118E 0.46 TCGA-D9-A6EC-06 1 15976263 15976263 T G DDI2 Missense_Mutation p.L313R 0.13 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 1 159785398 159785398 A G FCRL6 Missense_Mutation p.R418G 0.08 tolerated(0.1) benign(0.435) TCGA-D9-A6EC-06 1 15988024 15988024 A G RSC1A1 Missense_Mutation p.E554G 0.18 deleterious(0.02) possibly_damaging(0.869) TCGA-D9-A6EC-06 1 159897619 159897619 C T IGSF9 Missense_Mutation p.E1097K 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-D9-A6EC-06 1 160054046 160054046 G A KCNJ9 Missense_Mutation p.G76S 0.38 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 1 160326852 160326852 C T NCSTN Nonsense_Mutation p.Q606* 0.43 TCGA-D9-A6EC-06 1 160465934 160465934 T G SLAMF6 Missense_Mutation p.K100T 0.23 tolerated(1) benign(0) TCGA-D9-A6EC-06 1 160465987 160465987 C T SLAMF6 Silent p.Q82Q 0.49 TCGA-D9-A6EC-06 1 160518034 160518034 C T CD84 3'Flank 0.44 TCGA-D9-A6EC-06 1 160793355 160793355 A C LY9 Silent p.S533S 0.25 TCGA-D9-A6EC-06 1 160969507 160969507 G A F11R Missense_Mutation p.A242V 0.22 deleterious(0) probably_damaging(0.961) TCGA-D9-A6EC-06 1 161017577 161017577 G A ARHGAP30 Silent p.P1078P 0.19 TCGA-D9-A6EC-06 1 161089989 161089989 T C NIT1 Silent p.A228A 0.21 TCGA-D9-A6EC-06 1 161133674 161133674 T G USP21 Missense_Mutation p.F374C 0.14 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 1 161179354 161179354 C T NDUFS2 Missense_Mutation p.P199L 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 161680618 161680618 G T FCRLA Missense_Mutation p.D73Y 0.47 deleterious(0) probably_damaging(0.91) TCGA-D9-A6EC-06 1 16263758 16263758 A G SPEN Missense_Mutation p.Q3376R 0.07 possibly_damaging(0.833) TCGA-D9-A6EC-06 1 162829439 162829439 T C C1orf110 5'UTR 0.14 TCGA-D9-A6EC-06 1 163044374 163044374 G A RGS4 3'UTR 0.47 TCGA-D9-A6EC-06 1 163138138 163138138 T C RGS5 Missense_Mutation p.K22R 0.19 tolerated(1) benign(0.046) TCGA-D9-A6EC-06 1 16358333 16358333 G A CLCNKA Missense_Mutation p.S584N 0.52 deleterious(0.03) benign(0.053) TCGA-D9-A6EC-06 1 16475278 16475278 T A EPHA2 Missense_Mutation p.T140S 0.15 tolerated(0.79) benign(0.002) TCGA-D9-A6EC-06 1 164815926 164815926 C T PBX1 3'UTR 0.61 TCGA-D9-A6EC-06 1 16558499 16558499 A C RSG1 3'UTR 0.07 TCGA-D9-A6EC-06 1 166818688 166818688 A G POGK Missense_Mutation p.E291G 0.12 tolerated(0.16) benign(0.291) TCGA-D9-A6EC-06 1 166963285 166963285 C T MAEL Nonsense_Mutation p.R168* 0.50 TCGA-D9-A6EC-06 1 166973517 166973517 G A MAEL Silent p.G208G 0.33 TCGA-D9-A6EC-06 1 167038168 167038168 A G GPA33 Silent p.L136L 0.16 TCGA-D9-A6EC-06 1 167403309 167403309 A G CD247 Missense_Mutation p.L114P 0.17 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 1 167515373 167515373 G A CREG1 Silent p.I208I 0.54 TCGA-D9-A6EC-06 1 167973186 167973186 T C DCAF6 Missense_Mutation p.V359A 0.45 tolerated(0.37) probably_damaging(0.954) TCGA-D9-A6EC-06 1 169509958 169509958 G A F5 Missense_Mutation p.P1457L 0.40 tolerated(0.35) benign(0.026) TCGA-D9-A6EC-06 1 169572304 169572304 A G SELP Silent p.T555T 0.12 TCGA-D9-A6EC-06 1 17084287 17084287 C T MST1L RNA 0.06 TCGA-D9-A6EC-06 1 171178045 171178045 C T FMO2 Missense_Mutation p.P457S 0.40 deleterious(0) probably_damaging(0.968) TCGA-D9-A6EC-06 1 171605734 171605734 C T MYOC Silent p.Q282Q 0.52 TCGA-D9-A6EC-06 1 172007579 172007579 A G DNM3 Missense_Mutation p.R324G 0.12 deleterious(0.04) benign(0.18) TCGA-D9-A6EC-06 1 173744919 173744919 A G KLHL20 Missense_Mutation p.R526G 0.18 deleterious(0.05) possibly_damaging(0.816) TCGA-D9-A6EC-06 1 175331899 175331899 G A TNR Silent p.F918F 0.50 TCGA-D9-A6EC-06 1 175334299 175334299 C T TNR Missense_Mutation p.D812N 0.44 tolerated(0.15) probably_damaging(0.976) TCGA-D9-A6EC-06 1 175355282 175355282 G A TNR Missense_Mutation p.P555S 0.53 tolerated(0.21) possibly_damaging(0.505) TCGA-D9-A6EC-06 1 17592186 17592186 G A PADI3 Missense_Mutation p.G127R 0.46 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 1 176525686 176525686 G A PAPPA2 Silent p.G76G 0.35 TCGA-D9-A6EC-06 1 176525895 176525895 C T PAPPA2 Missense_Mutation p.A146V 0.51 deleterious_low_confidence(0.03) benign(0) TCGA-D9-A6EC-06 1 176564652 176564652 G A PAPPA2 Missense_Mutation p.D638N 0.63 tolerated(0.34) benign(0.435) TCGA-D9-A6EC-06 1 176668385 176668385 C T PAPPA2 Missense_Mutation p.L966F 0.47 deleterious(0) possibly_damaging(0.685) TCGA-D9-A6EC-06 1 176671844 176671844 C T PAPPA2 Missense_Mutation p.P1113L 0.46 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 1 176927486 176927486 C T ASTN1 Silent p.E577E 0.48 TCGA-D9-A6EC-06 1 176984011 176984011 C T ASTN1 Missense_Mutation p.G480E 0.49 deleterious(0) possibly_damaging(0.522) TCGA-D9-A6EC-06 1 177001815 177001815 C T ASTN1 Silent p.R214R 0.47 TCGA-D9-A6EC-06 1 17720863 17720863 G A PADI6 RNA 0.56 TCGA-D9-A6EC-06 1 178412129 178412129 C T RASAL2 Missense_Mutation p.P416L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 1 178514922 178514922 C T C1ORF220 Missense_Mutation p.S103F 0.38 possibly_damaging(0.683) TCGA-D9-A6EC-06 1 178753573 178753573 C T RALGPS2 Silent p.S26S 0.27 TCGA-D9-A6EC-06 1 179494559 179494559 G A AXDND1 Missense_Mutation p.E863K 0.41 tolerated(0.55) benign(0.001) TCGA-D9-A6EC-06 1 179815312 179815312 T G TOR1AIP2 Missense_Mutation p.N436T 0.09 deleterious(0) possibly_damaging(0.831) TCGA-D9-A6EC-06 1 179851814 179851814 C T TOR1AIP1 Silent p.F59F 0.57 TCGA-D9-A6EC-06 1 179983099 179983099 T C CEP350 Missense_Mutation p.L504P 0.11 possibly_damaging(0.602) TCGA-D9-A6EC-06 1 180017712 180017712 C T CEP350 Missense_Mutation p.P1555L 0.43 benign(0.007) TCGA-D9-A6EC-06 1 18023653 18023653 G A ARHGEF10L Silent p.E1206E 0.53 TCGA-D9-A6EC-06 1 18023686 18023686 C T ARHGEF10L Silent p.P1217P 0.33 TCGA-D9-A6EC-06 1 18023761 18023761 C T ARHGEF10L Silent p.S1242S 0.44 TCGA-D9-A6EC-06 1 180243553 180243553 T G LHX4 Missense_Mutation p.L338V 0.08 deleterious(0.04) benign(0.037) TCGA-D9-A6EC-06 1 180243581 180243581 G A LHX4 Missense_Mutation p.G347E 0.19 deleterious(0.01) possibly_damaging(0.457) TCGA-D9-A6EC-06 1 180794456 180794456 C T XPR1 Silent p.S370S 0.19 TCGA-D9-A6EC-06 1 181021441 181021441 T C MR1 Silent p.H225H 0.20 TCGA-D9-A6EC-06 1 181453098 181453098 G A CACNA1E Missense_Mutation p.G73E 0.47 deleterious(0.01) probably_damaging(0.931) TCGA-D9-A6EC-06 1 181686280 181686280 C T CACNA1E Missense_Mutation p.S456F 0.31 deleterious(0) possibly_damaging(0.485) TCGA-D9-A6EC-06 1 181701926 181701926 G A CACNA1E Missense_Mutation p.G902R 0.43 tolerated(0.08) probably_damaging(0.953) TCGA-D9-A6EC-06 1 181725195 181725195 C T CACNA1E Missense_Mutation p.L1365F 0.44 deleterious(0) probably_damaging(0.966) TCGA-D9-A6EC-06 1 181735723 181735723 C T CACNA1E Silent p.F1619F 0.51 TCGA-D9-A6EC-06 1 182555223 182555223 T G RNASEL Missense_Mutation p.K240T 0.15 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 182635135 182635135 T C RGS8 Silent p.A72A 0.24 TCGA-D9-A6EC-06 1 182638839 182638839 G A RGS8 Intron 0.47 TCGA-D9-A6EC-06 1 182638840 182638840 G T RGS8 Intron 0.47 TCGA-D9-A6EC-06 1 182874720 182874720 T G SHCBP1L Missense_Mutation p.N416T 0.10 deleterious(0.03) benign(0.03) TCGA-D9-A6EC-06 1 183212431 183212431 G A LAMC2 Missense_Mutation p.E1160K 0.47 deleterious(0.02) possibly_damaging(0.543) TCGA-D9-A6EC-06 1 183253891 183253891 G A NMNAT2 Silent p.S161S 0.49 TCGA-D9-A6EC-06 1 183525296 183525296 T C NCF2 Missense_Mutation p.D513G 0.19 tolerated(0.06) benign(0) TCGA-D9-A6EC-06 1 184679652 184679652 G A EDEM3 Missense_Mutation p.P574L 0.27 tolerated(0.27) benign(0.042) TCGA-D9-A6EC-06 1 186072630 186072630 G A HMCN1 Missense_Mutation p.E3534K 0.15 probably_damaging(0.994) TCGA-D9-A6EC-06 1 186076056 186076056 C T HMCN1 Missense_Mutation p.P3604L 0.23 benign(0.226) TCGA-D9-A6EC-06 1 186106979 186106979 G A HMCN1 Missense_Mutation p.R4600K 0.38 possibly_damaging(0.899) TCGA-D9-A6EC-06 1 186313134 186313134 T G TPR Missense_Mutation p.K1169T 0.31 benign(0.403) TCGA-D9-A6EC-06 1 18808288 18808288 G A KLHDC7A Silent p.E271E 0.19 TCGA-D9-A6EC-06 1 190067555 190067555 G A BRINP3 Missense_Mutation p.R632C 0.49 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 1 190067583 190067583 A C BRINP3 Missense_Mutation p.F622L 0.05 deleterious(0.02) probably_damaging(0.97) TCGA-D9-A6EC-06 1 190250801 190250801 C T BRINP3 Missense_Mutation p.E106K 0.55 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A6EC-06 1 19166162 19166162 G A TAS1R2 Silent p.F817F 0.13 TCGA-D9-A6EC-06 1 1919990 1919990 T G C1orf222 Missense_Mutation p.K77T 0.10 deleterious(0.03) possibly_damaging(0.859) TCGA-D9-A6EC-06 1 192153780 192153780 G A RGS18 3'UTR 0.36 TCGA-D9-A6EC-06 1 192548279 192548279 T G RGS1 Missense_Mutation p.F153V 0.19 tolerated(0.06) possibly_damaging(0.631) TCGA-D9-A6EC-06 1 19439389 19439389 G A UBR4 Intron 0.20 TCGA-D9-A6EC-06 1 19518823 19518823 A C UBR4 Missense_Mutation p.L418R 0.19 probably_damaging(0.983) TCGA-D9-A6EC-06 1 19571474 19571474 G A EMC1 Missense_Mutation p.P49L 0.53 tolerated(0.33) benign(0.01) TCGA-D9-A6EC-06 1 196392207 196392207 G A KCNT2 Silent p.S386S 0.38 TCGA-D9-A6EC-06 1 196397303 196397303 C T KCNT2 Missense_Mutation p.V306I 0.17 tolerated(0.23) probably_damaging(0.966) TCGA-D9-A6EC-06 1 196398855 196398855 C T KCNT2 Missense_Mutation p.G224E 0.38 deleterious(0) possibly_damaging(0.778) TCGA-D9-A6EC-06 1 196438157 196438157 C T KCNT2 Silent p.L142L 0.50 TCGA-D9-A6EC-06 1 196577387 196577387 C T KCNT2 Missense_Mutation p.R18Q 0.39 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-D9-A6EC-06 1 196642270 196642270 T G CFH Missense_Mutation p.L74R 0.14 deleterious(0.01) benign(0.236) TCGA-D9-A6EC-06 1 196928243 196928243 C T CFHR2 3'UTR 0.53 TCGA-D9-A6EC-06 1 196952059 196952059 G A CFHR5 Missense_Mutation p.D35N 0.53 tolerated(0.8) benign(0.037) TCGA-D9-A6EC-06 1 196963228 196963228 C T CFHR5 Missense_Mutation p.P150L 0.49 deleterious(0) probably_damaging(0.972) TCGA-D9-A6EC-06 1 196971746 196971746 G A CFHR5 Missense_Mutation p.E428K 0.28 deleterious(0) possibly_damaging(0.767) TCGA-D9-A6EC-06 1 197019884 197019884 C A F13B Nonsense_Mutation p.G561* 0.32 TCGA-D9-A6EC-06 1 197031084 197031084 G A F13B Missense_Mutation p.P94L 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 197070153 197070153 C T ASPM Missense_Mutation p.R2743Q 0.15 tolerated(0.1) benign(0.015) TCGA-D9-A6EC-06 1 197072071 197072071 A G ASPM Missense_Mutation p.Y2104H 0.51 deleterious(0.02) possibly_damaging(0.702) TCGA-D9-A6EC-06 1 197072539 197072539 G A ASPM Missense_Mutation p.R1948C 0.44 tolerated(0.08) benign(0.022) TCGA-D9-A6EC-06 1 197072540 197072540 G A ASPM Silent p.L1947L 0.44 TCGA-D9-A6EC-06 1 197091051 197091051 G A ASPM Silent p.R1288R 0.50 TCGA-D9-A6EC-06 1 197390607 197390607 A T CRB1 Missense_Mutation p.N550I 0.39 deleterious(0.01) possibly_damaging(0.812) TCGA-D9-A6EC-06 1 197404165 197404165 G A CRB1 Missense_Mutation p.E1058K 0.50 tolerated(0.7) benign(0.011) TCGA-D9-A6EC-06 1 197404369 197404369 C T CRB1 Missense_Mutation p.L1126F 0.42 deleterious(0.02) benign(0.263) TCGA-D9-A6EC-06 1 198492553 198492553 C T ATP6V1G3 Missense_Mutation p.E109K 0.80 tolerated(0.06) benign(0.33) TCGA-D9-A6EC-06 1 200017531 200017531 C T NR5A2 Missense_Mutation p.P232L 0.41 tolerated(0.12) benign(0.011) TCGA-D9-A6EC-06 1 200143225 200143225 G A NR5A2 Missense_Mutation p.E505K 0.53 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 1 200376579 200376579 A G ZNF281 Missense_Mutation p.L752S 0.24 tolerated(0.13) probably_damaging(0.946) TCGA-D9-A6EC-06 1 200818333 200818333 A C CAMSAP2 Missense_Mutation p.K812N 0.18 tolerated(0.08) possibly_damaging(0.572) TCGA-D9-A6EC-06 1 200965480 200965480 C T KIF21B Silent p.K707K 0.22 TCGA-D9-A6EC-06 1 200969850 200969850 C T KIF21B Silent p.E487E 0.46 TCGA-D9-A6EC-06 1 201197635 201197635 G A IGFN1 3'UTR 0.55 TCGA-D9-A6EC-06 1 201292181 201292181 A C PKP1 Missense_Mutation p.N536T 0.14 tolerated(0.24) benign(0.05) TCGA-D9-A6EC-06 1 201334319 201334319 G A TNNT2 Silent p.I127I 0.42 TCGA-D9-A6EC-06 1 201782368 201782368 A G NAV1 Silent p.G1774G 0.15 TCGA-D9-A6EC-06 1 201827587 201827587 G A IPO9 Missense_Mutation p.D412N 0.12 tolerated(0.05) benign(0.004) TCGA-D9-A6EC-06 1 201966582 201966582 T G RNPEP Missense_Mutation p.S330R 0.30 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 202245638 202245638 C T LGR6 Silent p.S211S 0.60 TCGA-D9-A6EC-06 1 202287438 202287438 C T LGR6 Silent p.V669V 0.73 TCGA-D9-A6EC-06 1 202568414 202568414 T G SYT2 Missense_Mutation p.K329Q 0.16 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 1 202864777 202864777 G A KLHL12 Silent p.G336G 0.36 TCGA-D9-A6EC-06 1 203452352 203452352 T G PRELP Missense_Mutation p.L14V 0.06 tolerated_low_confidence(0.47) benign(0.092) TCGA-D9-A6EC-06 1 203821555 203821555 A C ZC3H11A 3'UTR 0.31 TCGA-D9-A6EC-06 1 204093813 204093813 T C SOX13 Missense_Mutation p.Y474H 0.47 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 204380330 204380330 G A PPP1R15B Silent p.L70L 0.50 TCGA-D9-A6EC-06 1 204399104 204399104 T G PIK3C2B Missense_Mutation p.E1448A 0.18 tolerated(0.49) possibly_damaging(0.814) TCGA-D9-A6EC-06 1 20442015 20442015 C T PLA2G2D Missense_Mutation p.G93R 0.38 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 1 204971736 204971736 A C NFASC Missense_Mutation p.K1050T 0.17 tolerated(0.49) unknown(0) TCGA-D9-A6EC-06 1 205057883 205057883 A C RBBP5 3'UTR 0.27 TCGA-D9-A6EC-06 1 205495964 205495964 A C CDK18 Missense_Mutation p.K273T 0.21 deleterious(0.04) probably_damaging(0.933) TCGA-D9-A6EC-06 1 205628560 205628560 G A SLC45A3 Silent p.I488I 0.42 TCGA-D9-A6EC-06 1 205760651 205760651 A G SLC41A1 3'UTR 0.16 TCGA-D9-A6EC-06 1 205764513 205764513 G A SLC41A1 Missense_Mutation p.P389L 0.39 tolerated(0.2) possibly_damaging(0.628) TCGA-D9-A6EC-06 1 205812794 205812794 C T PM20D1 Splice_Site p.X276_splice 0.20 TCGA-D9-A6EC-06 1 205812795 205812795 C T PM20D1 Missense_Mutation p.R276Q 0.22 tolerated(0.07) benign(0.26) TCGA-D9-A6EC-06 1 205896630 205896630 C T SLC26A9 Missense_Mutation p.G402E 0.37 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 1 206231126 206231126 A G AVPR1B Missense_Mutation p.E420G 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-D9-A6EC-06 1 206240141 206240141 G A C1orf186 Missense_Mutation p.A104V 0.44 tolerated(0.18) benign(0.002) TCGA-D9-A6EC-06 1 206243250 206243250 T C C1orf186 Silent p.E4E 0.26 TCGA-D9-A6EC-06 1 206331180 206331180 C T CTSE Missense_Mutation p.P396S 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A6EC-06 1 206626721 206626721 A T SRGAP2 Missense_Mutation p.Q699H 0.21 deleterious(0.01) possibly_damaging(0.712) TCGA-D9-A6EC-06 1 207039927 207039927 G A IL20 Silent p.K108K 0.45 TCGA-D9-A6EC-06 1 207103720 207103720 G A PIGR Silent p.F746F 0.45 TCGA-D9-A6EC-06 1 207236538 207236538 A G PFKFB2 Missense_Mutation p.E120G 0.12 benign(0.444) TCGA-D9-A6EC-06 1 207498095 207498095 A G CD55 Missense_Mutation p.K160E 0.19 deleterious(0) benign(0.157) TCGA-D9-A6EC-06 1 207627817 207627817 C T CR2 Silent p.V18V 0.39 TCGA-D9-A6EC-06 1 207640067 207640067 C T CR2 Silent p.F85F 0.41 TCGA-D9-A6EC-06 1 207718817 207718817 C T CR1 Missense_Mutation p.P801S 0.38 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 1 207751455 207751455 A C CR1 Silent p.R1615R 0.11 TCGA-D9-A6EC-06 1 209807885 209807885 G A LAMB3 Silent p.F157F 0.53 TCGA-D9-A6EC-06 1 209811274 209811274 T G LAMB3 Missense_Mutation p.Q117H 0.39 tolerated(0.28) benign(0.008) TCGA-D9-A6EC-06 1 209936836 209936836 G A TRAF3IP3 Splice_Site p.X203_splice 0.44 TCGA-D9-A6EC-06 1 209956724 209956724 G - C1orf74 Frame_Shift_Del p.E87Rfs*7 0.31 TCGA-D9-A6EC-06 1 21009216 21009216 A C KIF17 Missense_Mutation p.L798R 0.17 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 21014012 21014012 C T KIF17 Missense_Mutation p.E603K 0.66 tolerated_low_confidence(0.8) benign(0.009) TCGA-D9-A6EC-06 1 21039985 21039985 G A KIF17 Missense_Mutation p.R148W 0.38 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 21040040 21040040 C T KIF17 Silent p.E129E 0.42 TCGA-D9-A6EC-06 1 211192169 211192169 A T KCNH1 Missense_Mutation p.F330I 0.48 tolerated(0.09) benign(0.001) TCGA-D9-A6EC-06 1 211652364 211652364 G A RD3 3'UTR 0.14 TCGA-D9-A6EC-06 1 212273795 212273795 C T DTL Missense_Mutation p.S488F 0.50 tolerated(0.32) possibly_damaging(0.707) TCGA-D9-A6EC-06 1 212617725 212617725 G A NENF Missense_Mutation p.D95N 0.58 deleterious(0.03) benign(0) TCGA-D9-A6EC-06 1 212800080 212800080 C T FAM71A 3'UTR 0.52 TCGA-D9-A6EC-06 1 213046127 213046127 A C FLVCR1 Missense_Mutation p.N331H 0.24 deleterious(0.01) possibly_damaging(0.782) TCGA-D9-A6EC-06 1 213134668 213134668 A C VASH2 Intron 0.11 TCGA-D9-A6EC-06 1 214557431 214557431 G A PTPN14 Silent p.Y589Y 0.15 TCGA-D9-A6EC-06 1 214819190 214819190 T G CENPF Missense_Mutation p.L2093V 0.19 probably_damaging(0.996) TCGA-D9-A6EC-06 1 215298009 215298009 C T KCNK2 Missense_Mutation p.P131S 0.17 deleterious(0) possibly_damaging(0.882) TCGA-D9-A6EC-06 1 21551807 21551807 A C ECE1 Missense_Mutation p.V659G 0.13 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 1 215972452 215972452 G A USH2A Missense_Mutation p.P3252L 0.32 benign(0.026) TCGA-D9-A6EC-06 1 216052310 216052310 G A USH2A Missense_Mutation p.P2785L 0.39 probably_damaging(0.994) TCGA-D9-A6EC-06 1 216850792 216850792 G A ESRRG Missense_Mutation p.S38F 0.27 tolerated_low_confidence(0.08) possibly_damaging(0.814) TCGA-D9-A6EC-06 1 21771644 21771644 C T NBPF3 Missense_Mutation p.S22F 0.20 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-D9-A6EC-06 1 217824497 217824497 A C SPATA17 Missense_Mutation p.K73Q 0.40 tolerated(0.37) benign(0.12) TCGA-D9-A6EC-06 1 217856629 217856629 T A SPATA17 Silent p.V107V 0.22 TCGA-D9-A6EC-06 1 217856630 217856630 C T SPATA17 Missense_Mutation p.R108W 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 21798094 21798094 G A NBPF3 Missense_Mutation p.R160Q 0.61 tolerated(0.08) benign(0.238) TCGA-D9-A6EC-06 1 21900165 21900165 C T ALPL Silent p.F290F 0.35 TCGA-D9-A6EC-06 1 21903938 21903938 G A ALPL Missense_Mutation p.D458N 0.32 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 21944461 21944461 T A RAP1GAP Missense_Mutation p.E88V 0.16 deleterious(0.03) possibly_damaging(0.679) TCGA-D9-A6EC-06 1 220101634 220101634 G A SLC30A10 Missense_Mutation p.S50L 0.28 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 1 220178604 220178604 A C EPRS Silent p.P683P 0.19 TCGA-D9-A6EC-06 1 220178622 220178622 G T EPRS Missense_Mutation p.F677L 0.24 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 1 220193455 220193455 C T EPRS Nonsense_Mutation p.W408* 0.50 TCGA-D9-A6EC-06 1 220193456 220193456 C T EPRS Nonsense_Mutation p.W408* 0.51 TCGA-D9-A6EC-06 1 220213566 220213566 G A EPRS Missense_Mutation p.S31F 0.39 tolerated(0.09) benign(0.003) TCGA-D9-A6EC-06 1 220284226 220284226 C T IARS2 Missense_Mutation p.R476C 0.47 deleterious(0) possibly_damaging(0.632) TCGA-D9-A6EC-06 1 220791794 220791794 A C MARK1 Missense_Mutation p.K232T 0.15 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 1 22163357 22163357 G A HSPG2 Silent p.L3431L 0.45 TCGA-D9-A6EC-06 1 22202128 22202128 T C HSPG2 Missense_Mutation p.E1099G 0.08 benign(0.392) TCGA-D9-A6EC-06 1 222695804 222695804 C T HHIPL2 3'UTR 0.41 TCGA-D9-A6EC-06 1 222713519 222713519 C T HHIPL2 Missense_Mutation p.R428Q 0.47 deleterious(0.04) possibly_damaging(0.69) TCGA-D9-A6EC-06 1 222717378 222717378 C T HHIPL2 Missense_Mutation p.E159K 0.46 tolerated(0.6) benign(0.029) TCGA-D9-A6EC-06 1 222717433 222717433 G A HHIPL2 Silent p.F140F 0.41 TCGA-D9-A6EC-06 1 223177300 223177300 A G DISP1 Missense_Mutation p.E854G 0.16 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 1 223285347 223285347 A C TLR5 Missense_Mutation p.L343V 0.13 deleterious(0.03) possibly_damaging(0.619) TCGA-D9-A6EC-06 1 223568257 223568257 G A C1orf65 Silent p.K480K 0.50 TCGA-D9-A6EC-06 1 224577418 224577418 T C WDR26 3'UTR 0.30 TCGA-D9-A6EC-06 1 226349258 226349258 T G ACBD3 Missense_Mutation p.E234D 0.11 tolerated(0.21) benign(0.217) TCGA-D9-A6EC-06 1 226923417 226923417 G A ITPKB Silent p.A581A 0.42 TCGA-D9-A6EC-06 1 226923841 226923841 G A ITPKB Missense_Mutation p.S440F 0.50 deleterious_low_confidence(0.03) benign(0.24) TCGA-D9-A6EC-06 1 226924289 226924289 G A ITPKB Missense_Mutation p.P291S 0.46 tolerated_low_confidence(0.14) benign(0.016) TCGA-D9-A6EC-06 1 227381561 227381561 T G CDC42BPA Missense_Mutation p.E175D 0.11 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 1 228033821 228033821 C T PRSS38 Missense_Mutation p.P298L 0.47 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 1 22835217 22835217 C T ZBTB40 Silent p.F564F 0.20 TCGA-D9-A6EC-06 1 228469827 228469827 G A OBSCN Silent p.R3226R 0.42 TCGA-D9-A6EC-06 1 228480371 228480371 T G OBSCN Missense_Mutation p.L4013R 0.07 possibly_damaging(0.89) TCGA-D9-A6EC-06 1 22850861 22850861 T A ZBTB40 Missense_Mutation p.L1150H 0.23 deleterious(0) benign(0.354) TCGA-D9-A6EC-06 1 22852861 22852861 T G ZBTB40 Missense_Mutation p.V1231G 0.14 deleterious(0) benign(0.307) TCGA-D9-A6EC-06 1 22903278 22903278 C T EPHA8 Missense_Mutation p.P243L 0.18 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 22915580 22915580 T C EPHA8 Missense_Mutation p.V399A 0.22 deleterious(0.01) benign(0.282) TCGA-D9-A6EC-06 1 229631686 229631686 A C NUP133 Missense_Mutation p.W310G 0.16 tolerated(0.09) probably_damaging(0.973) TCGA-D9-A6EC-06 1 229654083 229654083 A C ABCB10 Missense_Mutation p.V687G 0.35 deleterious(0.01) benign(0.224) TCGA-D9-A6EC-06 1 229738629 229738629 G A TAF5L Silent p.L95L 0.44 TCGA-D9-A6EC-06 1 230822772 230822772 A G COG2 Missense_Mutation p.N491S 0.08 tolerated(1) benign(0) TCGA-D9-A6EC-06 1 230841908 230841908 C T AGT Missense_Mutation p.E299K 0.47 tolerated(0.06) benign(0.092) TCGA-D9-A6EC-06 1 23191454 23191454 G A EPHB2 Missense_Mutation p.G351E 0.27 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 1 23222020 23222020 C T EPHB2 Silent p.A549A 0.42 TCGA-D9-A6EC-06 1 23222931 23222931 G A EPHB2 Silent p.S576S 0.22 TCGA-D9-A6EC-06 1 233313566 233313566 C T PCNXL2 Silent p.K1085K 0.94 TCGA-D9-A6EC-06 1 233398769 233398769 C T PCNXL2 Silent p.K98K 0.39 TCGA-D9-A6EC-06 1 233802402 233802402 C T KCNK1 Silent p.V139V 0.36 TCGA-D9-A6EC-06 1 23418946 23418946 C T LUZP1 Silent p.S603S 0.51 TCGA-D9-A6EC-06 1 234367473 234367473 G A SLC35F3 Silent p.V198V 0.44 TCGA-D9-A6EC-06 1 234596107 234596107 T G TARBP1 Missense_Mutation p.S479R 0.12 deleterious(0.03) possibly_damaging(0.793) TCGA-D9-A6EC-06 1 23519802 23519802 C T HTR1D Missense_Mutation p.G304D 0.34 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 23637012 23637012 T C HNRNPR Missense_Mutation p.N616D 0.13 tolerated_low_confidence(0.22) unknown(0) TCGA-D9-A6EC-06 1 236719413 236719413 T C HEATR1 Missense_Mutation p.E1834G 0.08 tolerated(0.36) benign(0.001) TCGA-D9-A6EC-06 1 23707948 23707948 T C TCEA3 3'UTR 0.11 TCGA-D9-A6EC-06 1 23743876 23743876 A G TCEA3 Silent p.P82P 0.31 TCGA-D9-A6EC-06 1 23758195 23758195 C T ASAP3 Missense_Mutation p.R847K 0.35 tolerated_low_confidence(0.47) benign(0.001) TCGA-D9-A6EC-06 1 23763773 23763773 T C ASAP3 Missense_Mutation p.S398G 0.13 deleterious(0.02) possibly_damaging(0.665) TCGA-D9-A6EC-06 1 237664095 237664095 C T RYR2 Missense_Mutation p.A763V 0.45 benign(0.015) TCGA-D9-A6EC-06 1 237872253 237872253 G A RYR2 Missense_Mutation p.V3333M 0.55 probably_damaging(0.985) TCGA-D9-A6EC-06 1 237947229 237947229 G A RYR2 Missense_Mutation p.D4073N 0.32 possibly_damaging(0.742) TCGA-D9-A6EC-06 1 237947582 237947582 G A RYR2 Silent p.V4190V 0.42 TCGA-D9-A6EC-06 1 237972278 237972278 C T RYR2 Silent p.F4792F 0.49 TCGA-D9-A6EC-06 1 23908083 23908083 G A MDS2 RNA 0.30 TCGA-D9-A6EC-06 1 240071507 240071507 G A CHRM3 Nonsense_Mutation p.W252* 0.11 TCGA-D9-A6EC-06 1 240071598 240071598 C T CHRM3 Missense_Mutation p.P283S 0.45 tolerated(0.72) benign(0.026) TCGA-D9-A6EC-06 1 24021238 24021238 A C RPL11 Missense_Mutation p.K118T 0.22 deleterious(0.01) possibly_damaging(0.652) TCGA-D9-A6EC-06 1 240341300 240341300 G A FMN2 Missense_Mutation p.R621Q 0.38 unknown(0) TCGA-D9-A6EC-06 1 240371765 240371765 C T FMN2 Missense_Mutation p.P1218L 0.38 benign(0.001) TCGA-D9-A6EC-06 1 241907749 241907749 T G WDR64 Missense_Mutation p.F499V 0.19 tolerated(0.5) benign(0.213) TCGA-D9-A6EC-06 1 241964494 241964494 T G WDR64 Missense_Mutation p.F1075V 0.23 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-D9-A6EC-06 1 2428309 2428309 C T PLCH2 Missense_Mutation p.A632V 0.46 deleterious(0.03) benign(0.233) TCGA-D9-A6EC-06 1 2428310 2428310 C T PLCH2 Silent p.A632A 0.45 TCGA-D9-A6EC-06 1 24409282 24409282 G A MYOM3 Intron 0.17 TCGA-D9-A6EC-06 1 24413134 24413134 C T MYOM3 Missense_Mutation p.A600T 0.14 deleterious(0.02) possibly_damaging(0.611) TCGA-D9-A6EC-06 1 244627250 244627250 A T C1orf101 Nonsense_Mutation p.R36* 0.09 TCGA-D9-A6EC-06 1 244724017 244724017 T G C1orf101 Missense_Mutation p.I359M 0.25 deleterious(0.01) possibly_damaging(0.477) TCGA-D9-A6EC-06 1 247202738 247202738 T G ZNF670 Missense_Mutation p.E35D 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 247712513 247712513 G A GCSAML Missense_Mutation p.R7Q 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-D9-A6EC-06 1 247737677 247737677 C T GCSAML Missense_Mutation p.P134L 0.37 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 247752528 247752528 C T OR2G2 Silent p.N289N 0.39 TCGA-D9-A6EC-06 1 247769711 247769711 C T OR2G3 Missense_Mutation p.S275F 0.55 deleterious(0.02) benign(0.25) TCGA-D9-A6EC-06 1 247902188 247902188 C T OR14K1 Missense_Mutation p.S91F 0.25 deleterious(0.02) possibly_damaging(0.647) TCGA-D9-A6EC-06 1 247978557 247978557 C T OR14A16 Missense_Mutation p.A159T 0.48 tolerated(0.08) possibly_damaging(0.531) TCGA-D9-A6EC-06 1 248039273 248039273 G A TRIM58 Missense_Mutation p.D315N 0.45 tolerated(0.39) possibly_damaging(0.579) TCGA-D9-A6EC-06 1 248084811 248084811 C T OR2T8 Silent p.F164F 0.31 TCGA-D9-A6EC-06 1 248112606 248112606 C T OR2L8 Silent p.I149I 0.42 TCGA-D9-A6EC-06 1 248112806 248112806 C T OR2L8 Missense_Mutation p.S216F 0.26 deleterious(0) probably_damaging(0.955) TCGA-D9-A6EC-06 1 248201552 248201552 G A OR2L2 5'UTR 0.32 TCGA-D9-A6EC-06 1 248201930 248201930 C T OR2L2 Missense_Mutation p.R121C 0.47 deleterious(0.01) benign(0.12) TCGA-D9-A6EC-06 1 248343846 248343846 C T OR2M2 Missense_Mutation p.L187F 0.46 deleterious(0) benign(0.33) TCGA-D9-A6EC-06 1 248366447 248366447 C T OR2M3 Silent p.F26F 0.42 TCGA-D9-A6EC-06 1 248402709 248402709 T C OR2M4 Missense_Mutation p.L160P 0.13 deleterious(0.01) possibly_damaging(0.905) TCGA-D9-A6EC-06 1 248403078 248403078 C T OR2M4 Missense_Mutation p.P283L 0.18 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 1 248487421 248487421 G A OR2M7 Silent p.I150I 0.46 TCGA-D9-A6EC-06 1 248512192 248512192 G A OR14C36 Missense_Mutation p.G39E 0.57 deleterious(0.01) possibly_damaging(0.88) TCGA-D9-A6EC-06 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.34 TCGA-D9-A6EC-06 1 248525116 248525116 C T OR2T4 Silent p.I78I 0.33 TCGA-D9-A6EC-06 1 248637572 248637572 G A OR2T3 Silent p.R307R 0.20 TCGA-D9-A6EC-06 1 248652039 248652039 C T OR2T5 Silent p.I50I 0.15 TCGA-D9-A6EC-06 1 248722643 248722643 G A OR2T29 Silent p.I50I 0.26 TCGA-D9-A6EC-06 1 248737781 248737781 C T OR2T34 Missense_Mutation p.G93E 0.35 deleterious(0.03) possibly_damaging(0.826) TCGA-D9-A6EC-06 1 2538422 2538422 C T MMEL1 Missense_Mutation p.E208K 0.62 tolerated(0.47) benign(0.009) TCGA-D9-A6EC-06 1 25551580 25551580 A C SYF2 Missense_Mutation p.F160C 0.24 deleterious(0) probably_damaging(0.964) TCGA-D9-A6EC-06 1 26156151 26156151 A C MTFR1L Silent p.P201P 0.15 TCGA-D9-A6EC-06 1 26161490 26161490 T G AUNIP Missense_Mutation p.Q356H 0.11 deleterious(0.03) benign(0.1) TCGA-D9-A6EC-06 1 26189234 26189234 A C PAQR7 3'UTR 0.16 TCGA-D9-A6EC-06 1 26520299 26520299 A C CATSPER4 Missense_Mutation p.T127P 0.15 deleterious(0.02) possibly_damaging(0.828) TCGA-D9-A6EC-06 1 26581844 26581844 A G CEP85 Missense_Mutation p.R131G 0.44 deleterious(0.04) probably_damaging(0.962) TCGA-D9-A6EC-06 1 26620710 26620710 T C UBXN11 Missense_Mutation p.K182R 0.09 tolerated(0.23) probably_damaging(0.911) TCGA-D9-A6EC-06 1 26759428 26759428 A G DHDDS 5'UTR 0.11 TCGA-D9-A6EC-06 1 26887546 26887546 A T RPS6KA1 Missense_Mutation p.K460M 0.11 deleterious(0) possibly_damaging(0.908) TCGA-D9-A6EC-06 1 27092737 27092737 C T ARID1A Nonsense_Mutation p.Q920* 0.55 TCGA-D9-A6EC-06 1 27177659 27177659 C T ZDHHC18 Silent p.S291S 0.53 TCGA-D9-A6EC-06 1 27190436 27190436 G A SFN Missense_Mutation p.E245K 0.23 tolerated_low_confidence(0.24) unknown(0) TCGA-D9-A6EC-06 1 27212510 27212510 A C GPN2 Missense_Mutation p.L228R 0.10 deleterious(0) possibly_damaging(0.869) TCGA-D9-A6EC-06 1 27216315 27216315 G T GPN2 Missense_Mutation p.N91K 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A6EC-06 1 27276497 27276497 C T C1orf172 3'UTR 0.57 TCGA-D9-A6EC-06 1 27436218 27436218 G A SLC9A1 Silent p.I288I 0.15 TCGA-D9-A6EC-06 1 27662038 27662038 C T TMEM222 3'UTR 0.40 TCGA-D9-A6EC-06 1 27721270 27721270 G A GPR3 Missense_Mutation p.R323Q 0.56 deleterious(0.03) benign(0.011) TCGA-D9-A6EC-06 1 27736441 27736441 C A WASF2 Missense_Mutation p.A362S 0.46 tolerated(0.43) unknown(0) TCGA-D9-A6EC-06 1 27876722 27876722 G A AHDC1 Silent p.P635P 0.55 TCGA-D9-A6EC-06 1 28209553 28209553 A C THEMIS2 Missense_Mutation p.K573T 0.25 deleterious(0.05) benign(0.037) TCGA-D9-A6EC-06 1 28282546 28282546 C T SMPDL3B Missense_Mutation p.P320S 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 29041249 29041249 A G GMEB1 Silent p.Q562Q 0.14 TCGA-D9-A6EC-06 1 29041282 29041282 T G GMEB1 Missense_Mutation p.D573E 0.19 tolerated_low_confidence(0.31) benign(0.011) TCGA-D9-A6EC-06 1 29391577 29391577 A C EPB41 Silent p.P697P 0.34 TCGA-D9-A6EC-06 1 29606101 29606101 C T PTPRU Missense_Mutation p.S566F 0.57 tolerated(0.09) probably_damaging(1) TCGA-D9-A6EC-06 1 29631291 29631291 C T PTPRU Silent p.F901F 0.51 TCGA-D9-A6EC-06 1 31406161 31406161 T G PUM1 Missense_Mutation p.K1155T 0.12 deleterious(0) possibly_damaging(0.464) TCGA-D9-A6EC-06 1 31782976 31782976 A C ZCCHC17 Missense_Mutation p.N11H 0.21 tolerated(0.17) possibly_damaging(0.775) TCGA-D9-A6EC-06 1 32138336 32138336 T G COL16A1 Missense_Mutation p.N989H 0.13 unknown(0) TCGA-D9-A6EC-06 1 32502560 32502560 T G KHDRBS1 Missense_Mutation p.L274W 0.16 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 1 32687997 32687997 T C EIF3I 5'UTR 0.45 TCGA-D9-A6EC-06 1 32745578 32745578 A G LCK Missense_Mutation p.E393G 0.19 deleterious(0.02) possibly_damaging(0.833) TCGA-D9-A6EC-06 1 32794668 32794668 G A HDAC1 Splice_Site p.X213_splice 0.59 TCGA-D9-A6EC-06 1 33276295 33276295 G A YARS Nonsense_Mutation p.R93* 0.61 TCGA-D9-A6EC-06 1 33354648 33354648 A C HPCA Missense_Mutation p.K50T 0.12 deleterious(0.03) benign(0.177) TCGA-D9-A6EC-06 1 33746049 33746049 A T ZNF362 Missense_Mutation p.K225M 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-D9-A6EC-06 1 33797042 33797042 G A PHC2 Missense_Mutation p.P637L 0.07 deleterious(0) possibly_damaging(0.519) TCGA-D9-A6EC-06 1 33957002 33957002 A C ZSCAN20 Missense_Mutation p.N382H 0.09 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 1 33960890 33960890 G A ZSCAN20 Silent p.T982T 0.43 TCGA-D9-A6EC-06 1 3397034 3397034 C T ARHGEF16 Silent p.L671L 0.41 TCGA-D9-A6EC-06 1 3397035 3397035 C T ARHGEF16 Missense_Mutation p.R672W 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 34006163 34006163 C T CSMD2 Missense_Mutation p.G3054E 0.58 tolerated(0.47) possibly_damaging(0.764) TCGA-D9-A6EC-06 1 3410611 3410611 T C MEGF6 Missense_Mutation p.S1403G 0.17 deleterious(0.02) benign(0.008) TCGA-D9-A6EC-06 1 34191043 34191043 G A CSMD2 Missense_Mutation p.P828S 0.47 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 34238301 34238301 C T CSMD2 Missense_Mutation p.R532K 0.56 tolerated(0.09) possibly_damaging(0.887) TCGA-D9-A6EC-06 1 34254204 34254204 C T CSMD2 Missense_Mutation p.E514K 0.40 tolerated(0.6) benign(0.101) TCGA-D9-A6EC-06 1 34667858 34667858 C T C1orf94 Nonsense_Mutation p.Q482* 0.10 TCGA-D9-A6EC-06 1 35223810 35223810 C T GJB5 3'UTR 0.57 TCGA-D9-A6EC-06 1 35227625 35227625 C T GJB4 Missense_Mutation p.S257L 0.71 tolerated(0.14) benign(0.001) TCGA-D9-A6EC-06 1 35365327 35365327 G A DLGAP3 Silent p.P443P 0.49 TCGA-D9-A6EC-06 1 35485165 35485165 A C ZMYM6 Missense_Mutation p.S73A 0.19 tolerated(0.08) benign(0.156) TCGA-D9-A6EC-06 1 35884163 35884163 C T ZMYM4 Silent p.L1477L 0.55 TCGA-D9-A6EC-06 1 36023664 36023664 T G NCDN 5'UTR 0.16 TCGA-D9-A6EC-06 1 36026643 36026643 C T NCDN Silent p.I297I 0.38 TCGA-D9-A6EC-06 1 36230908 36230908 T A CLSPN Missense_Mutation p.D15V 0.14 deleterious_low_confidence(0) benign(0.141) TCGA-D9-A6EC-06 1 36282615 36282615 T G AGO4 Missense_Mutation p.I51S 0.20 deleterious(0) probably_damaging(0.912) TCGA-D9-A6EC-06 1 36563217 36563217 C T COL8A2 Missense_Mutation p.E689K 0.62 deleterious(0.03) probably_damaging(0.911) TCGA-D9-A6EC-06 1 37356694 37356694 C T GRIK3 Missense_Mutation p.G40E 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 3742419 3742419 A G CEP104 Missense_Mutation p.F756S 0.13 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 1 37941176 37941176 A G ZC3H12A Missense_Mutation p.S27G 0.18 tolerated_low_confidence(0.08) benign(0.001) TCGA-D9-A6EC-06 1 38003316 38003316 A C SNIP1 3'UTR 0.06 TCGA-D9-A6EC-06 1 38003518 38003518 T G SNIP1 Missense_Mutation p.N341T 0.07 deleterious(0) possibly_damaging(0.906) TCGA-D9-A6EC-06 1 38187412 38187412 A G EPHA10 Missense_Mutation p.L689P 0.29 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 38227001 38227001 C T EPHA10 Intron 0.52 TCGA-D9-A6EC-06 1 38227480 38227480 G A EPHA10 Silent p.P149P 0.14 TCGA-D9-A6EC-06 1 38323351 38323351 A G MTF1 5'UTR 0.15 TCGA-D9-A6EC-06 1 38423887 38423887 C T SF3A3 Missense_Mutation p.E493K 0.35 deleterious(0.05) possibly_damaging(0.907) TCGA-D9-A6EC-06 1 39782105 39782105 T C MACF1 Silent p.A1169A 0.04 TCGA-D9-A6EC-06 1 39801935 39801935 C T MACF1 Intron 0.62 TCGA-D9-A6EC-06 1 39802080 39802080 A T MACF1 Intron 0.08 TCGA-D9-A6EC-06 1 39880029 39880029 C T KIAA0754 Silent p.S1228S 0.36 TCGA-D9-A6EC-06 1 39934380 39934380 T G MACF1 Missense_Mutation p.L5224V 0.21 benign(0.365) TCGA-D9-A6EC-06 1 40131821 40131821 C T NT5C1A Missense_Mutation p.G75S 0.57 deleterious(0.01) probably_damaging(0.948) TCGA-D9-A6EC-06 1 40211121 40211121 T C PPIE Silent p.A153A 0.11 TCGA-D9-A6EC-06 1 40713590 40713590 A G TMCO2 5'UTR 0.11 TCGA-D9-A6EC-06 1 40928585 40928585 A C ZFP69B Missense_Mutation p.K310T 0.38 tolerated(0.17) probably_damaging(0.963) TCGA-D9-A6EC-06 1 40955210 40955210 T C ZFP69 Missense_Mutation p.L119P 0.17 deleterious(0) possibly_damaging(0.855) TCGA-D9-A6EC-06 1 41454341 41454341 A G CTPS1 Missense_Mutation p.R172G 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-D9-A6EC-06 1 42048738 42048738 A G HIVEP3 Silent p.S577S 0.16 TCGA-D9-A6EC-06 1 42049054 42049054 T C HIVEP3 Missense_Mutation p.N472S 0.13 probably_damaging(0.993) TCGA-D9-A6EC-06 1 43395662 43395662 G A SLC2A1 Silent p.P187P 0.12 TCGA-D9-A6EC-06 1 43395663 43395663 G A SLC2A1 Missense_Mutation p.P187L 0.12 deleterious(0.02) probably_damaging(0.975) TCGA-D9-A6EC-06 1 43651027 43651027 G A WDR65 Silent p.R323R 0.31 TCGA-D9-A6EC-06 1 43738874 43738874 T C TMEM125 Silent p.L161L 0.15 TCGA-D9-A6EC-06 1 43770985 43770985 A C TIE1 Missense_Mutation p.K152T 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 1 43890867 43890867 C T SZT2 Silent p.S878S 0.27 TCGA-D9-A6EC-06 1 44057491 44057491 C T PTPRF Nonsense_Mutation p.Q514* 0.22 TCGA-D9-A6EC-06 1 44058187 44058187 A T PTPRF Silent p.T576T 0.56 TCGA-D9-A6EC-06 1 44137312 44137312 C G KDM4A Silent p.V500V 0.21 TCGA-D9-A6EC-06 1 44365293 44365293 C T ST3GAL3 Missense_Mutation p.A282V 0.47 deleterious(0) probably_damaging(0.92) TCGA-D9-A6EC-06 1 44437280 44437280 C T DPH2 Missense_Mutation p.R236W 0.46 deleterious(0) possibly_damaging(0.849) TCGA-D9-A6EC-06 1 44595031 44595031 G A KLF17 Missense_Mutation p.E30K 0.35 tolerated(0.08) benign(0.019) TCGA-D9-A6EC-06 1 45110434 45110434 T C RNF220 Silent p.D397D 0.18 TCGA-D9-A6EC-06 1 45213357 45213357 C T KIF2C Missense_Mutation p.P101S 0.32 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 1 45213358 45213358 C T KIF2C Missense_Mutation p.P101L 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 45268513 45268513 A G PLK3 Silent p.S245S 0.08 TCGA-D9-A6EC-06 1 45295589 45295589 C T PTCH2 Silent p.E309E 0.60 TCGA-D9-A6EC-06 1 45509014 45509014 C T ZSWIM5 Missense_Mutation p.E496K 0.34 tolerated(0.24) unknown(0) TCGA-D9-A6EC-06 1 46032572 46032572 C T AKR1A1 Missense_Mutation p.S79F 0.62 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 46095306 46095306 T C GPBP1L1 Missense_Mutation p.E405G 0.13 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 1 47131031 47131031 T C ATPAF1 Missense_Mutation p.D114G 0.09 tolerated(0.05) benign(0.406) TCGA-D9-A6EC-06 1 47348885 47348885 C T CYP4Z2P RNA 0.30 TCGA-D9-A6EC-06 1 47351217 47351217 T G CYP4Z2P RNA 0.23 TCGA-D9-A6EC-06 1 47398442 47398442 C T CYP4A11 Missense_Mutation p.G452E 0.61 deleterious(0) probably_damaging(0.965) TCGA-D9-A6EC-06 1 47505192 47505192 C T CYP4X1 Missense_Mutation p.S354F 0.41 deleterious(0.01) possibly_damaging(0.583) TCGA-D9-A6EC-06 1 47515118 47515118 C T CYP4X1 Nonsense_Mutation p.Q433* 0.62 TCGA-D9-A6EC-06 1 47548097 47548097 C T CYP4Z1 Silent p.F152F 0.60 TCGA-D9-A6EC-06 1 47603346 47603346 C T CYP4A22 Silent p.I63I 0.39 TCGA-D9-A6EC-06 1 47611795 47611795 A G CYP4A22 Missense_Mutation p.H445R 0.15 deleterious(0) possibly_damaging(0.58) TCGA-D9-A6EC-06 1 4772461 4772461 G A AJAP1 Silent p.E177E 0.80 TCGA-D9-A6EC-06 1 48865302 48865302 G A SPATA6 Silent p.Y167Y 0.48 TCGA-D9-A6EC-06 1 51778589 51778589 A G TTC39A Missense_Mutation p.L62P 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 52266273 52266273 T G NRD1 Missense_Mutation p.K867T 0.07 tolerated(0.07) probably_damaging(0.942) TCGA-D9-A6EC-06 1 52703535 52703535 T G ZFYVE9 Missense_Mutation p.L149R 0.14 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-D9-A6EC-06 1 52825850 52825850 T G CC2D1B Missense_Mutation p.E220A 0.10 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 52828314 52828314 T G CC2D1B Missense_Mutation p.E58D 0.15 tolerated(0.46) benign(0.194) TCGA-D9-A6EC-06 1 52867073 52867073 T G ORC1 Missense_Mutation p.N62H 0.19 tolerated(0.07) possibly_damaging(0.873) TCGA-D9-A6EC-06 1 53267620 53267620 C T ZYG11B Nonsense_Mutation p.Q539* 0.58 TCGA-D9-A6EC-06 1 53580531 53580531 C T SLC1A7 Missense_Mutation p.M110I 0.55 tolerated(0.1) possibly_damaging(0.643) TCGA-D9-A6EC-06 1 53608156 53608156 C T SLC1A7 5'UTR 0.45 TCGA-D9-A6EC-06 1 54610241 54610241 C T CDCP2 Missense_Mutation p.V109M 0.52 tolerated(0.11) possibly_damaging(0.863) TCGA-D9-A6EC-06 1 54610386 54610386 G A CDCP2 Silent p.I60I 0.18 TCGA-D9-A6EC-06 1 55069588 55069588 T A ACOT11 Missense_Mutation p.V377D 0.15 tolerated(0.09) benign(0.221) TCGA-D9-A6EC-06 1 55139782 55139782 G A MROH7 Missense_Mutation p.D632N 0.56 deleterious(0.03) probably_damaging(0.928) TCGA-D9-A6EC-06 1 55148445 55148445 G A MROH7 Missense_Mutation p.R833Q 0.19 tolerated(0.07) benign(0.043) TCGA-D9-A6EC-06 1 55251726 55251726 G A TTC22 Missense_Mutation p.T317I 0.49 tolerated(1) benign(0.004) TCGA-D9-A6EC-06 1 55464789 55464789 T G BSND 5'UTR 0.13 TCGA-D9-A6EC-06 1 57140173 57140173 C T PRKAA2 Missense_Mutation p.R72C 0.32 deleterious(0) probably_damaging(0.985) TCGA-D9-A6EC-06 1 59125680 59125680 A T MYSM1 Missense_Mutation p.L826M 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.779) TCGA-D9-A6EC-06 1 6184666 6184666 C T CHD5 Missense_Mutation p.E1484K 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A6EC-06 1 62350030 62350030 G A INADL Silent p.K1027K 0.22 TCGA-D9-A6EC-06 1 62579860 62579860 C T INADL Missense_Mutation p.P1533S 0.43 tolerated(0.42) benign(0.011) TCGA-D9-A6EC-06 1 62675980 62675980 A G L1TD1 Missense_Mutation p.S512G 0.16 deleterious(0.02) benign(0.348) TCGA-D9-A6EC-06 1 62739983 62739983 C T KANK4 Missense_Mutation p.E265K 0.31 tolerated(0.61) possibly_damaging(0.861) TCGA-D9-A6EC-06 1 6293684 6293684 A C ICMT Missense_Mutation p.L102V 0.18 tolerated(0.16) benign(0.007) TCGA-D9-A6EC-06 1 62979530 62979530 G A DOCK7 Nonsense_Mutation p.R1295* 0.47 TCGA-D9-A6EC-06 1 62979531 62979531 A C DOCK7 Missense_Mutation p.S1294R 0.48 deleterious(0) possibly_damaging(0.878) TCGA-D9-A6EC-06 1 63042954 63042954 A G DOCK7 Silent p.A697A 0.18 TCGA-D9-A6EC-06 1 63329721 63329721 C T ATG4C Missense_Mutation p.S423F 0.41 deleterious(0) possibly_damaging(0.723) TCGA-D9-A6EC-06 1 63955855 63955855 C T ITGB3BP Missense_Mutation p.S67N 0.45 tolerated(0.55) benign(0.063) TCGA-D9-A6EC-06 1 6505809 6505809 G A ESPN Silent p.G426G 0.67 TCGA-D9-A6EC-06 1 65325834 65325834 G A JAK1 Missense_Mutation p.P430S 0.47 tolerated(0.1) benign(0.032) TCGA-D9-A6EC-06 1 65851393 65851393 A C DNAJC6 Splice_Site p.X267_splice 0.14 TCGA-D9-A6EC-06 1 6634898 6634898 G A TAS1R1 Missense_Mutation p.G236R 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-D9-A6EC-06 1 6639206 6639206 T G TAS1R1 Silent p.T696T 0.16 TCGA-D9-A6EC-06 1 67105498 67105498 A C SGIP1 Missense_Mutation p.E70D 0.12 tolerated(0.17) probably_damaging(0.952) TCGA-D9-A6EC-06 1 67299694 67299694 C T WDR78 Missense_Mutation p.R624Q 0.28 tolerated(0.46) benign(0.14) TCGA-D9-A6EC-06 1 68512459 68512459 A T DIRAS3 Missense_Mutation p.N174K 0.17 tolerated(0.26) benign(0.145) TCGA-D9-A6EC-06 1 68512702 68512702 C T DIRAS3 Silent p.K93K 0.43 TCGA-D9-A6EC-06 1 70494042 70494042 G A LRRC7 Silent p.E623E 0.33 TCGA-D9-A6EC-06 1 70587489 70587489 G A LRRC7 Missense_Mutation p.M1511I 0.18 tolerated(1) benign(0.144) TCGA-D9-A6EC-06 1 70710437 70710437 A T SRSF11 Missense_Mutation p.R291W 0.33 tolerated(0.07) unknown(0) TCGA-D9-A6EC-06 1 70715702 70715702 A C SRSF11 Missense_Mutation p.K364Q 0.10 deleterious(0) unknown(0) TCGA-D9-A6EC-06 1 70781240 70781240 A C ANKRD13C Missense_Mutation p.L196R 0.10 deleterious(0) probably_damaging(0.934) TCGA-D9-A6EC-06 1 71418617 71418617 G A PTGER3 Silent p.T410T 0.44 TCGA-D9-A6EC-06 1 74819007 74819007 C T FPGT-TNNI3K Silent p.V444V 0.20 TCGA-D9-A6EC-06 1 75036900 75036900 T C C1orf173 Silent p.P1498P 0.15 TCGA-D9-A6EC-06 1 75038872 75038872 C T C1orf173 Missense_Mutation p.G841E 0.43 tolerated(0.27) benign(0.023) TCGA-D9-A6EC-06 1 75055399 75055399 C T C1orf173 Missense_Mutation p.E698K 0.45 tolerated(0.08) benign(0.287) TCGA-D9-A6EC-06 1 75097549 75097549 G C C1orf173 Missense_Mutation p.Q223E 0.47 deleterious(0.01) possibly_damaging(0.596) TCGA-D9-A6EC-06 1 75190470 75190470 T C CRYZ Silent p.R12R 0.22 TCGA-D9-A6EC-06 1 75626653 75626653 G A LHX8 3'UTR 0.56 TCGA-D9-A6EC-06 1 75684205 75684205 G A SLC44A5 Missense_Mutation p.P500L 0.18 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 1 77528866 77528866 A C ST6GALNAC5 Missense_Mutation p.H329P 0.24 benign(0) TCGA-D9-A6EC-06 1 78034135 78034135 G A ZZZ3 Missense_Mutation p.P783L 0.33 deleterious(0) possibly_damaging(0.878) TCGA-D9-A6EC-06 1 78034136 78034136 G A ZZZ3 Missense_Mutation p.P783S 0.33 deleterious(0.04) possibly_damaging(0.907) TCGA-D9-A6EC-06 1 7887368 7887368 C T PER3 Silent p.F785F 0.65 TCGA-D9-A6EC-06 1 7910879 7910879 C T UTS2 Silent p.R84R 0.58 TCGA-D9-A6EC-06 1 79392669 79392669 C T ELTD1 Missense_Mutation p.E329K 0.40 tolerated(0.9) benign(0.012) TCGA-D9-A6EC-06 1 82408933 82408933 G A LPHN2 Silent p.T226T 0.46 TCGA-D9-A6EC-06 1 8416190 8416190 C T RERE Missense_Mutation p.E1486K 0.57 unknown(0) TCGA-D9-A6EC-06 1 85587442 85587442 A T WDR63 Missense_Mutation p.E642D 0.06 deleterious(0.03) benign(0.21) TCGA-D9-A6EC-06 1 86361729 86361729 C T COL24A1 Missense_Mutation p.G951E 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 86905979 86905979 C T CLCA2 Missense_Mutation p.P451L 0.21 deleterious(0.03) benign(0.05) TCGA-D9-A6EC-06 1 87025668 87025668 T G CLCA4 Missense_Mutation p.F71L 0.07 tolerated(0.12) benign(0.097) TCGA-D9-A6EC-06 1 8716104 8716104 G A RERE Missense_Mutation p.R85C 0.51 probably_damaging(0.995) TCGA-D9-A6EC-06 1 87570256 87570256 C T HS2ST1 Silent p.F316F 0.45 TCGA-D9-A6EC-06 1 87797912 87797912 C T LMO4 Missense_Mutation p.L72F 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 89323033 89323033 G A GTF2B Missense_Mutation p.P225S 0.17 tolerated(0.29) benign(0.004) TCGA-D9-A6EC-06 1 89846120 89846120 T C GBP6 Silent p.I267I 0.16 TCGA-D9-A6EC-06 1 89851007 89851007 A T GBP6 Missense_Mutation p.K627N 0.19 deleterious_low_confidence(0.03) benign(0.027) TCGA-D9-A6EC-06 1 9027773 9027773 C T CA6 Silent p.L209L 0.37 TCGA-D9-A6EC-06 1 906379 906379 C T PLEKHN1 Missense_Mutation p.P202L 0.67 tolerated(0.72) benign(0.029) TCGA-D9-A6EC-06 1 909216 909216 C T PLEKHN1 Missense_Mutation p.L480F 0.68 deleterious(0.04) benign(0.178) TCGA-D9-A6EC-06 1 9100217 9100217 G A SLC2A5 Silent p.V201V 0.56 TCGA-D9-A6EC-06 1 91180266 91180266 G A BARHL2 Missense_Mutation p.P225S 0.49 tolerated(0.09) unknown(0) TCGA-D9-A6EC-06 1 92470752 92470752 G A BRDT Missense_Mutation p.E891K 0.45 tolerated(0.2) benign(0.223) TCGA-D9-A6EC-06 1 92554330 92554330 C T BTBD8 Silent p.V75V 0.16 TCGA-D9-A6EC-06 1 92612806 92612806 C T BTBD8 Missense_Mutation p.L334F 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 92613243 92613243 G A BTBD8 Nonsense_Mutation p.W341* 0.41 TCGA-D9-A6EC-06 1 93651957 93651957 T G CCDC18 Missense_Mutation p.L174R 0.30 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 9427561 9427561 G A SPSB1 Missense_Mutation p.G250E 0.63 deleterious(0.02) possibly_damaging(0.864) TCGA-D9-A6EC-06 1 94548950 94548950 A G ABCA4 Silent p.S272S 0.06 TCGA-D9-A6EC-06 1 94645344 94645344 A C ARHGAP29 Missense_Mutation p.L806R 0.07 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 1 95001652 95001652 T C F3 Missense_Mutation p.E94G 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-D9-A6EC-06 1 9642361 9642361 C T SLC25A33 Silent p.V256V 0.43 TCGA-D9-A6EC-06 1 9656049 9656049 A G TMEM201 Missense_Mutation p.Q72R 0.09 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 1 9714466 9714466 A C C1orf200 Missense_Mutation p.L10R 0.14 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-D9-A6EC-06 1 97658696 97658696 C T DPYD Missense_Mutation p.G851R 0.49 deleterious(0.03) probably_damaging(0.993) TCGA-D9-A6EC-06 1 9782037 9782037 A G PIK3CD Missense_Mutation p.E687G 0.54 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 1 9795220 9795220 C T CLSTN1 Silent p.E632E 0.35 TCGA-D9-A6EC-06 1 9795537 9795537 G A CLSTN1 Missense_Mutation p.T624I 0.35 deleterious(0) possibly_damaging(0.544) TCGA-D9-A6EC-06 1 98165022 98165022 T G DPYD Missense_Mutation p.K189Q 0.46 deleterious(0.03) benign(0.078) TCGA-D9-A6EC-06 20 13610751 13610751 A G TASP1 5'UTR 0.25 TCGA-D9-A6EC-06 20 13755810 13755810 G A ESF1 Missense_Mutation p.S381F 0.50 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 20 138197 138197 C T DEFB127 Silent p.F4F 0.58 TCGA-D9-A6EC-06 20 13830854 13830854 C T SEL1L2 Missense_Mutation p.D531N 0.23 tolerated_low_confidence(0.12) possibly_damaging(0.784) TCGA-D9-A6EC-06 20 1517932 1517932 T G SIRPD Missense_Mutation p.N149T 0.18 tolerated(0.12) benign(0.112) TCGA-D9-A6EC-06 20 1629991 1629991 C T SIRPG Missense_Mutation p.G46E 0.37 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 20 1630016 1630016 C T SIRPG Missense_Mutation p.E38K 0.22 tolerated(0.16) benign(0.093) TCGA-D9-A6EC-06 20 16360709 16360709 G A KIF16B Silent p.I646I 0.49 TCGA-D9-A6EC-06 20 16486675 16486675 G A KIF16B Missense_Mutation p.S287F 0.46 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 20 17474665 17474665 G A BFSP1 3'UTR 0.27 TCGA-D9-A6EC-06 20 17928152 17928152 T G SNX5 Missense_Mutation p.Q352H 0.10 tolerated(0.09) benign(0.274) TCGA-D9-A6EC-06 20 18142488 18142488 C T CSRP2BP Missense_Mutation p.P236L 0.52 deleterious(0.01) benign(0.413) TCGA-D9-A6EC-06 20 18462387 18462387 T C POLR3F Missense_Mutation p.L269P 0.15 deleterious(0) possibly_damaging(0.76) TCGA-D9-A6EC-06 20 18529286 18529286 C T SEC23B Nonsense_Mutation p.Q593* 0.15 TCGA-D9-A6EC-06 20 20028411 20028411 C T CRNKL1 Missense_Mutation p.R368Q 0.15 deleterious(0.03) benign(0.426) TCGA-D9-A6EC-06 20 20033166 20033166 C T CRNKL1 Missense_Mutation p.G102R 0.26 deleterious_low_confidence(0) benign(0) TCGA-D9-A6EC-06 20 20350425 20350425 C T INSM1 Missense_Mutation p.P505L 0.26 deleterious(0) possibly_damaging(0.713) TCGA-D9-A6EC-06 20 20350426 20350426 C T INSM1 Silent p.P505P 0.48 TCGA-D9-A6EC-06 20 2291763 2291763 G A TGM3 Nonsense_Mutation p.W176* 0.40 TCGA-D9-A6EC-06 20 23065318 23065318 C T CD93 Silent p.R504R 0.42 TCGA-D9-A6EC-06 20 23065774 23065774 G A CD93 Silent p.S352S 0.50 TCGA-D9-A6EC-06 20 23065995 23065995 C T CD93 Missense_Mutation p.G279R 0.40 deleterious(0.02) possibly_damaging(0.813) TCGA-D9-A6EC-06 20 23549068 23549068 T G CST9L Missense_Mutation p.K7T 0.09 tolerated(0.18) benign(0.001) TCGA-D9-A6EC-06 20 23728389 23728389 G C CST1 3'UTR 0.52 TCGA-D9-A6EC-06 20 23728390 23728390 G A CST1 3'UTR 0.52 TCGA-D9-A6EC-06 20 2381052 2381052 C T TGM6 Silent p.F317F 0.40 TCGA-D9-A6EC-06 20 2451437 2451437 G A SNRPB 5'UTR 0.29 TCGA-D9-A6EC-06 20 24523987 24523987 C T SYNDIG1 Missense_Mutation p.S85F 0.56 deleterious(0) benign(0.406) TCGA-D9-A6EC-06 20 24930132 24930132 C T CST7 5'UTR 0.40 TCGA-D9-A6EC-06 20 25485643 25485643 G A NINL Missense_Mutation p.P197S 0.45 tolerated(0.09) benign(0.082) TCGA-D9-A6EC-06 20 2636707 2636707 T G NOP56 Intron 0.17 TCGA-D9-A6EC-06 20 2640345 2640345 T G IDH3B Missense_Mutation p.N337T 0.15 deleterious(0.01) benign(0.243) TCGA-D9-A6EC-06 20 29960884 29960884 G A DEFB118 Missense_Mutation p.E95K 0.45 tolerated(0.46) possibly_damaging(0.636) TCGA-D9-A6EC-06 20 29976790 29976790 G A DEFB119 3'UTR 0.57 TCGA-D9-A6EC-06 20 30193458 30193458 A G ID1 Missense_Mutation p.S90G 0.28 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 20 30409531 30409531 C T MYLK2 Nonsense_Mutation p.Q255* 0.47 TCGA-D9-A6EC-06 20 30507696 30507696 C T TTLL9 Silent p.F178F 0.41 TCGA-D9-A6EC-06 20 30525216 30525216 A T TTLL9 Missense_Mutation p.N341I 0.44 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 20 30585231 30585231 G C XKR7 Missense_Mutation p.E571Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 20 30610510 30610510 C T CCM2L Silent p.I327I 0.46 TCGA-D9-A6EC-06 20 30753158 30753158 T A TM9SF4 Missense_Mutation p.L614M 0.23 deleterious(0.05) possibly_damaging(0.832) TCGA-D9-A6EC-06 20 30898268 30898268 C T KIF3B Missense_Mutation p.L230F 0.41 tolerated(0.05) benign(0.417) TCGA-D9-A6EC-06 20 30898288 30898288 C T KIF3B Silent p.I236I 0.24 TCGA-D9-A6EC-06 20 3128464 3128464 A G FASTKD5 Missense_Mutation p.L418S 0.14 deleterious(0) probably_damaging(0.959) TCGA-D9-A6EC-06 20 31672797 31672797 G A BPIFB4 Silent p.G259G 0.43 TCGA-D9-A6EC-06 20 31760769 31760769 A G BPIFA2 Silent p.G63G 0.11 TCGA-D9-A6EC-06 20 31894754 31894754 G A BPIFB1 Silent p.K452K 0.36 TCGA-D9-A6EC-06 20 3214629 3214629 G A SLC4A11 Silent p.T224T 0.43 TCGA-D9-A6EC-06 20 32379197 32379197 T G ZNF341 Silent p.T806T 0.22 TCGA-D9-A6EC-06 20 3240139 3240139 T G C20orf194 Missense_Mutation p.K1014N 0.15 deleterious(0.02) possibly_damaging(0.615) TCGA-D9-A6EC-06 20 33147581 33147581 T C MAP1LC3A Missense_Mutation p.L86P 0.25 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 20 33345528 33345528 G A NCOA6 Silent p.N341N 0.46 TCGA-D9-A6EC-06 20 33519767 33519767 A C GSS Missense_Mutation p.F335C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 20 33530422 33530422 G A GSS Silent p.F120F 0.24 TCGA-D9-A6EC-06 20 33703219 33703219 A C EDEM2 3'UTR 0.22 TCGA-D9-A6EC-06 20 33999785 33999785 C T UQCC1 5'UTR 0.47 TCGA-D9-A6EC-06 20 34082451 34082451 G A CEP250 Missense_Mutation p.R1045Q 0.36 benign(0.013) TCGA-D9-A6EC-06 20 34099216 34099216 A C CEP250 Missense_Mutation p.T2364P 0.16 benign(0.398) TCGA-D9-A6EC-06 20 34535446 34535446 C T PHF20 Missense_Mutation p.P979L 0.43 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 20 34596321 34596321 T C CNBD2 Missense_Mutation p.L358P 0.14 tolerated(0.37) benign(0.002) TCGA-D9-A6EC-06 20 34611591 34611591 G A CNBD2 Missense_Mutation p.G442E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 20 34782227 34782227 G A EPB41L1 Missense_Mutation p.R465Q 0.50 tolerated(0.31) benign(0.002) TCGA-D9-A6EC-06 20 34782228 34782228 G A EPB41L1 Silent p.R465R 0.52 TCGA-D9-A6EC-06 20 35317100 35317100 G A NDRG3 Missense_Mutation p.H61Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 20 35569473 35569473 C T SAMHD1 Missense_Mutation p.R106Q 0.48 tolerated(0.92) benign(0.004) TCGA-D9-A6EC-06 20 35812661 35812661 A G RPN2 Missense_Mutation p.K31R 0.15 tolerated(0.48) benign(0.003) TCGA-D9-A6EC-06 20 35929789 35929789 C T MANBAL Silent p.I41I 0.54 TCGA-D9-A6EC-06 20 36641519 36641519 A G TTI1 Missense_Mutation p.S234P 0.06 tolerated(0.11) benign(0.382) TCGA-D9-A6EC-06 20 36641538 36641538 T C TTI1 Silent p.Q227Q 0.16 TCGA-D9-A6EC-06 20 36687915 36687915 A C RPRD1B Missense_Mutation p.K216N 0.23 tolerated(0.09) benign(0.128) TCGA-D9-A6EC-06 20 3670319 3670319 A G SIGLEC1 Missense_Mutation p.L1642P 0.29 deleterious(0) probably_damaging(0.914) TCGA-D9-A6EC-06 20 36937364 36937364 C T BPI Missense_Mutation p.S97F 0.45 tolerated(0.09) benign(0.393) TCGA-D9-A6EC-06 20 36948630 36948630 T G BPI Missense_Mutation p.V241G 0.14 deleterious(0) possibly_damaging(0.904) TCGA-D9-A6EC-06 20 37580334 37580334 A C FAM83D Missense_Mutation p.K340T 0.20 tolerated(0.56) benign(0.149) TCGA-D9-A6EC-06 20 37580355 37580355 G A FAM83D Missense_Mutation p.R347Q 0.45 tolerated(0.63) benign(0.009) TCGA-D9-A6EC-06 20 3888854 3888854 T G PANK2 Missense_Mutation p.F304V 0.20 tolerated(0.13) possibly_damaging(0.804) TCGA-D9-A6EC-06 20 39741499 39741499 A T TOP1 Silent p.R462R 0.15 TCGA-D9-A6EC-06 20 40141564 40141564 T A CHD6 Missense_Mutation p.D258V 0.45 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 20 40770580 40770580 C T PTPRT Silent p.K915K 0.40 TCGA-D9-A6EC-06 20 41076963 41076963 C T PTPRT Missense_Mutation p.G486E 0.24 tolerated(0.06) possibly_damaging(0.608) TCGA-D9-A6EC-06 20 41076967 41076967 G A PTPRT Missense_Mutation p.P485S 0.35 deleterious(0) benign(0.27) TCGA-D9-A6EC-06 20 41419980 41419980 C T PTPRT Missense_Mutation p.R114K 0.41 deleterious(0.01) benign(0.237) TCGA-D9-A6EC-06 20 419155 419155 A C TBC1D20 3'UTR 0.15 TCGA-D9-A6EC-06 20 420925 420925 G A TBC1D20 Silent p.C245C 0.29 TCGA-D9-A6EC-06 20 42315685 42315685 C T MYBL2 Missense_Mutation p.A158V 0.61 tolerated(0.06) benign(0.017) TCGA-D9-A6EC-06 20 42893192 42893192 G A GDAP1L1 Silent p.E251E 0.54 TCGA-D9-A6EC-06 20 43030000 43030000 G A HNF4A 5'UTR 0.58 TCGA-D9-A6EC-06 20 43052705 43052705 C T HNF4A Nonsense_Mutation p.Q314* 0.46 TCGA-D9-A6EC-06 20 43138585 43138585 T G SERINC3 Missense_Mutation p.N187T 0.40 tolerated(0.07) probably_damaging(1) TCGA-D9-A6EC-06 20 43723495 43723495 T C KCNS1 3'UTR 0.08 TCGA-D9-A6EC-06 20 43851159 43851159 A C SEMG2 Silent p.R296R 0.32 TCGA-D9-A6EC-06 20 43881053 43881053 G A SLPI 3'UTR 0.37 TCGA-D9-A6EC-06 20 44174410 44174410 C T EPPIN-WFDC6 Splice_Site p.X31_splice 0.47 TCGA-D9-A6EC-06 20 44452672 44452672 T G TNNC2 Missense_Mutation p.K137Q 0.20 deleterious(0.04) benign(0.014) TCGA-D9-A6EC-06 20 44525647 44525647 A C CTSA Missense_Mutation p.N396H 0.20 tolerated(0.5) benign(0) TCGA-D9-A6EC-06 20 44670038 44670038 G A SLC12A5 Missense_Mutation p.G332R 0.51 tolerated(0.27) benign(0.296) TCGA-D9-A6EC-06 20 44693745 44693745 G A NCOA5 Missense_Mutation p.P251L 0.25 tolerated(0.46) probably_damaging(1) TCGA-D9-A6EC-06 20 44698859 44698859 G A NCOA5 Missense_Mutation p.P119S 0.71 tolerated(0.2) unknown(0) TCGA-D9-A6EC-06 20 45131035 45131035 G A ZNF334 Missense_Mutation p.H315Y 0.45 deleterious(0) possibly_damaging(0.712) TCGA-D9-A6EC-06 20 45131228 45131228 A G ZNF334 Silent p.S250S 0.32 TCGA-D9-A6EC-06 20 45808530 45808530 C T EYA2 Missense_Mutation p.S428F 0.33 deleterious(0) possibly_damaging(0.892) TCGA-D9-A6EC-06 20 45865083 45865083 T A ZMYND8 Missense_Mutation p.K902M 0.16 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 20 45867830 45867830 T G ZMYND8 Missense_Mutation p.E779D 0.22 tolerated_low_confidence(0.28) benign(0.007) TCGA-D9-A6EC-06 20 468181 468181 T G CSNK2A1 Missense_Mutation p.E288A 0.20 deleterious(0.03) possibly_damaging(0.873) TCGA-D9-A6EC-06 20 47605047 47605047 A C ARFGEF2 Missense_Mutation p.K794T 0.18 deleterious(0) possibly_damaging(0.884) TCGA-D9-A6EC-06 20 47615007 47615007 C T ARFGEF2 Nonsense_Mutation p.R1133* 0.41 TCGA-D9-A6EC-06 20 4776516 4776516 G A RASSF2 Nonsense_Mutation p.R78* 0.43 TCGA-D9-A6EC-06 20 47782730 47782730 T G STAU1 Missense_Mutation p.Q3H 0.37 deleterious_low_confidence(0.04) benign(0.216) TCGA-D9-A6EC-06 20 47989599 47989599 A G KCNB1 Missense_Mutation p.L833P 0.14 deleterious_low_confidence(0.01) benign(0.368) TCGA-D9-A6EC-06 20 48166630 48166630 C T PTGIS Missense_Mutation p.M57I 0.49 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 20 4837773 4837773 A C SLC23A2 Missense_Mutation p.S600A 0.08 tolerated(0.52) benign(0.03) TCGA-D9-A6EC-06 20 50290836 50290836 A C ATP9A Missense_Mutation p.L298W 0.13 deleterious(0.05) benign(0.049) TCGA-D9-A6EC-06 20 50290837 50290837 A C ATP9A Missense_Mutation p.L298V 0.22 tolerated(0.08) benign(0.02) TCGA-D9-A6EC-06 20 50407550 50407550 G A SALL4 Missense_Mutation p.S491L 0.24 tolerated(0.44) benign(0.085) TCGA-D9-A6EC-06 20 50768858 50768858 T G ZFP64 Missense_Mutation p.T625P 0.10 tolerated(0.12) benign(0.085) TCGA-D9-A6EC-06 20 5159584 5159584 T C CDS2 Missense_Mutation p.F171L 0.24 deleterious(0.03) possibly_damaging(0.85) TCGA-D9-A6EC-06 20 51873090 51873090 G T TSHZ2 Silent p.V1031V 0.23 TCGA-D9-A6EC-06 20 52570018 52570018 T C BCAS1 Missense_Mutation p.R545G 0.16 deleterious(0) possibly_damaging(0.904) TCGA-D9-A6EC-06 20 52644906 52644906 A C BCAS1 Intron 0.11 TCGA-D9-A6EC-06 20 52645101 52645101 G A BCAS1 Missense_Mutation p.P185S 0.45 tolerated(0.11) possibly_damaging(0.878) TCGA-D9-A6EC-06 20 5294802 5294802 A C PROKR2 Missense_Mutation p.F72V 0.08 tolerated(0.07) benign(0.232) TCGA-D9-A6EC-06 20 5295004 5295004 C T PROKR2 Silent p.Q4Q 0.52 TCGA-D9-A6EC-06 20 54823816 54823816 G A MC3R 5'UTR 0.43 TCGA-D9-A6EC-06 20 54824490 54824490 C T MC3R Silent p.F197F 0.52 TCGA-D9-A6EC-06 20 54941180 54941180 T C FAM210B Missense_Mutation p.V139A 0.15 deleterious(0.02) probably_damaging(0.932) TCGA-D9-A6EC-06 20 55111489 55111489 A G FAM209B Missense_Mutation p.S171G 0.07 tolerated(0.06) benign(0.115) TCGA-D9-A6EC-06 20 55803423 55803423 A C BMP7 Missense_Mutation p.F158C 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 20 56190020 56190020 C T ZBP1 Missense_Mutation p.R142Q 0.42 deleterious(0.03) benign(0.076) TCGA-D9-A6EC-06 20 57036066 57036066 C T APCDD1L Missense_Mutation p.G429E 0.20 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 20 57766564 57766564 C T ZNF831 Missense_Mutation p.R164W 0.05 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 20 58441395 58441395 A C SYCP2 Missense_Mutation p.F1425V 0.14 tolerated(0.1) benign(0.011) TCGA-D9-A6EC-06 20 58441445 58441445 A C SYCP2 Missense_Mutation p.I1408S 0.33 deleterious(0.03) benign(0.121) TCGA-D9-A6EC-06 20 58559714 58559714 T G CDH26 Missense_Mutation p.L188V 0.18 tolerated(0.58) benign(0.015) TCGA-D9-A6EC-06 20 5966599 5966599 C T MCM8 Missense_Mutation p.P662L 0.47 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 20 6022789 6022789 T G LRRN4 Missense_Mutation p.T368P 0.34 deleterious(0.02) possibly_damaging(0.878) TCGA-D9-A6EC-06 20 6025204 6025204 C T LRRN4 Missense_Mutation p.R328K 0.33 tolerated(0.4) benign(0.021) TCGA-D9-A6EC-06 20 6025307 6025307 G A LRRN4 Missense_Mutation p.P294S 0.20 tolerated(0.38) possibly_damaging(0.511) TCGA-D9-A6EC-06 20 60485496 60485496 G A CDH4 Missense_Mutation p.E403K 0.49 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 20 6078197 6078197 C T FERMT1 Missense_Mutation p.E311K 0.50 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 20 60885298 60885298 A T LAMA5 Missense_Mutation p.L3557Q 0.27 benign(0.04) TCGA-D9-A6EC-06 20 60899167 60899167 A C LAMA5 Missense_Mutation p.C1913G 0.24 benign(0) TCGA-D9-A6EC-06 20 60904839 60904839 G A LAMA5 Silent p.L1371L 0.42 TCGA-D9-A6EC-06 20 61162180 61162180 G A C20orf166 Intron 0.47 TCGA-D9-A6EC-06 20 61288342 61288342 T C SLCO4A1 Missense_Mutation p.L179P 0.16 deleterious(0) possibly_damaging(0.547) TCGA-D9-A6EC-06 20 61525538 61525538 G A DIDO1 Missense_Mutation p.P861S 0.45 benign(0.025) TCGA-D9-A6EC-06 20 61537257 61537257 G A DIDO1 Missense_Mutation p.P524S 0.47 benign(0.038) TCGA-D9-A6EC-06 20 61880175 61880175 G A NKAIN4 Missense_Mutation p.L89F 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-D9-A6EC-06 20 61981008 61981008 G A CHRNA4 Silent p.F585F 0.49 TCGA-D9-A6EC-06 20 62194400 62194400 G A HELZ2 Silent p.G1925G 0.23 TCGA-D9-A6EC-06 20 62221792 62221792 G A GMEB2 Missense_Mutation p.L415F 0.36 tolerated(0.72) benign(0.014) TCGA-D9-A6EC-06 20 62863651 62863651 A C MYT1 Missense_Mutation p.K937T 0.16 probably_damaging(0.998) TCGA-D9-A6EC-06 20 860467 860467 C T ANGPT4 Missense_Mutation p.G326R 0.29 tolerated(0.09) possibly_damaging(0.785) TCGA-D9-A6EC-06 20 861901 861901 G A ANGPT4 Silent p.F288F 0.40 TCGA-D9-A6EC-06 20 8639324 8639324 G A PLCB1 Missense_Mutation p.E279K 0.39 deleterious(0) probably_damaging(0.964) TCGA-D9-A6EC-06 20 8755208 8755208 C T PLCB1 Missense_Mutation p.H985Y 0.43 tolerated(0.33) benign(0.296) TCGA-D9-A6EC-06 20 9319589 9319589 G A PLCB4 Missense_Mutation p.D92N 0.40 tolerated(0.62) benign(0.003) TCGA-D9-A6EC-06 20 9351933 9351933 C T PLCB4 Silent p.P192P 0.27 TCGA-D9-A6EC-06 20 9417655 9417655 A G PLCB4 Missense_Mutation p.I862V 0.56 tolerated(0.2) probably_damaging(0.995) TCGA-D9-A6EC-06 21 10862639 10862639 G A IGHV1OR21-1 Silent p.R6R 0.23 TCGA-D9-A6EC-06 21 10916458 10916458 A C TPTE Nonsense_Mutation p.Y396* 0.10 TCGA-D9-A6EC-06 21 10920092 10920092 G A TPTE Missense_Mutation p.P388S 0.27 deleterious(0) probably_damaging(0.931) TCGA-D9-A6EC-06 21 10934968 10934968 G A TPTE Silent p.H275H 0.10 TCGA-D9-A6EC-06 21 10943010 10943010 A C TPTE Missense_Mutation p.L193V 0.14 tolerated(0.14) benign(0.26) TCGA-D9-A6EC-06 21 10951344 10951344 G A TPTE Missense_Mutation p.P123L 0.13 deleterious(0.04) benign(0.025) TCGA-D9-A6EC-06 21 11021122 11021122 G A BAGE2 RNA 0.09 TCGA-D9-A6EC-06 21 11038790 11038790 C A BAGE2 RNA 0.08 TCGA-D9-A6EC-06 21 11039057 11039057 C T BAGE2 RNA 0.06 TCGA-D9-A6EC-06 21 11039223 11039223 C T BAGE2 RNA 0.07 TCGA-D9-A6EC-06 21 11039296 11039296 G A BAGE2 RNA 0.08 TCGA-D9-A6EC-06 21 11049504 11049504 G A BAGE2 RNA 0.10 TCGA-D9-A6EC-06 21 11098914 11098914 G A BAGE2 RNA 0.42 TCGA-D9-A6EC-06 21 14417538 14417538 G A RNU6-614P 5'Flank 0.18 TCGA-D9-A6EC-06 21 15558294 15558294 C T LIPI Missense_Mutation p.G198R 0.44 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 21 15746078 15746078 G A HSPA13 Missense_Mutation p.P426S 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 21 15872983 15872983 C T SAMSN1 Missense_Mutation p.G280E 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 21 15882720 15882720 C T SAMSN1 Missense_Mutation p.G226S 0.47 tolerated(0.93) benign(0.007) TCGA-D9-A6EC-06 21 15884894 15884894 C T SAMSN1 Missense_Mutation p.D162N 0.22 tolerated(0.54) benign(0.036) TCGA-D9-A6EC-06 21 15918620 15918620 C T SAMSN1 Intron 0.65 TCGA-D9-A6EC-06 21 18931299 18931299 C T CXADR Missense_Mutation p.P141S 0.39 deleterious(0) probably_damaging(0.915) TCGA-D9-A6EC-06 21 18938054 18938054 T G CXADR 3'UTR 0.29 TCGA-D9-A6EC-06 21 19642394 19642394 G A TMPRSS15 Silent p.F984F 0.11 TCGA-D9-A6EC-06 21 22881186 22881186 G A NCAM2 Missense_Mutation p.G698S 0.58 tolerated(0.13) probably_damaging(1) TCGA-D9-A6EC-06 21 28212226 28212226 G A ADAMTS1 Missense_Mutation p.S607F 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 21 30255339 30255339 T C N6AMT1 Silent p.L63L 0.22 TCGA-D9-A6EC-06 21 30330851 30330851 G A LTN1 Silent p.I914I 0.55 TCGA-D9-A6EC-06 21 30412976 30412976 A C USP16 Missense_Mutation p.K333T 0.19 tolerated(0.23) probably_damaging(0.994) TCGA-D9-A6EC-06 21 30439235 30439235 G A CCT8 Missense_Mutation p.A180V 0.45 deleterious(0.01) possibly_damaging(0.728) TCGA-D9-A6EC-06 21 30909680 30909680 T A GRIK1 Missense_Mutation p.E907D 0.54 tolerated_low_confidence(0.15) possibly_damaging(0.704) TCGA-D9-A6EC-06 21 31062143 31062143 A C GRIK1 Missense_Mutation p.L150R 0.13 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 21 31654980 31654980 A G KRTAP24-1 Missense_Mutation p.S91P 0.18 tolerated(0.2) possibly_damaging(0.887) TCGA-D9-A6EC-06 21 32638796 32638796 A C TIAM1 Missense_Mutation p.F165V 0.14 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-D9-A6EC-06 21 32639145 32639145 G A TIAM1 Silent p.I48I 0.49 TCGA-D9-A6EC-06 21 33951032 33951032 G A TCP10L Missense_Mutation p.S157L 0.43 tolerated(0.5) benign(0.002) TCGA-D9-A6EC-06 21 34003403 34003403 G A SYNJ1 Missense_Mutation p.P1581S 0.47 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-D9-A6EC-06 21 34635103 34635103 T C IFNAR2 Silent p.F282F 0.22 TCGA-D9-A6EC-06 21 34877972 34877972 A C GART Missense_Mutation p.F874C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 21 37571519 37571519 A C DOPEY2 Missense_Mutation p.K97T 0.22 deleterious(0) possibly_damaging(0.799) TCGA-D9-A6EC-06 21 37617678 37617678 G A DOPEY2 Missense_Mutation p.D1134N 0.50 tolerated(0.25) benign(0.006) TCGA-D9-A6EC-06 21 37618279 37618279 C T DOPEY2 Missense_Mutation p.S1334L 0.46 deleterious(0.04) benign(0.102) TCGA-D9-A6EC-06 21 37618689 37618689 G A DOPEY2 Missense_Mutation p.E1471K 0.36 deleterious(0.01) possibly_damaging(0.899) TCGA-D9-A6EC-06 21 37833400 37833400 G A CLDN14 Silent p.P198P 0.38 TCGA-D9-A6EC-06 21 38390459 38390459 C T RIPPLY3 Silent p.L175L 0.45 TCGA-D9-A6EC-06 21 38390539 38390539 G A RIPPLY3 3'UTR 0.45 TCGA-D9-A6EC-06 21 38525296 38525296 T G TTC3 Missense_Mutation p.I820S 0.13 deleterious(0) probably_damaging(0.968) TCGA-D9-A6EC-06 21 40581929 40581929 T G BRWD1 Silent p.R1397R 0.18 TCGA-D9-A6EC-06 21 40627740 40627740 T G BRWD1 Missense_Mutation p.S696R 0.19 tolerated(0.07) probably_damaging(0.974) TCGA-D9-A6EC-06 21 40714972 40714972 A G HMGN1 3'UTR 0.19 TCGA-D9-A6EC-06 21 40847108 40847108 C T SH3BGR Silent p.S156S 0.44 TCGA-D9-A6EC-06 21 41452184 41452184 C T DSCAM Missense_Mutation p.E1439K 0.21 deleterious(0.04) possibly_damaging(0.792) TCGA-D9-A6EC-06 21 41496203 41496203 G A DSCAM Silent p.V1205V 0.43 TCGA-D9-A6EC-06 21 41539145 41539145 C T DSCAM Silent p.K1006K 0.41 TCGA-D9-A6EC-06 21 41561117 41561117 C T DSCAM Missense_Mutation p.G802E 0.50 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 21 41719805 41719805 G A DSCAM Silent p.S334S 0.18 TCGA-D9-A6EC-06 21 42064800 42064800 G A DSCAM Silent p.P148P 0.19 TCGA-D9-A6EC-06 21 43176782 43176782 G A RIPK4 Missense_Mutation p.A126V 0.46 deleterious(0) probably_damaging(0.973) TCGA-D9-A6EC-06 21 43243680 43243680 G A PRDM15 Silent p.H951H 0.50 TCGA-D9-A6EC-06 21 43412681 43412681 T G ZBTB21 Missense_Mutation p.E508D 0.21 tolerated(0.32) benign(0.011) TCGA-D9-A6EC-06 21 43645997 43645997 C T ABCG1 Missense_Mutation p.P87S 0.21 tolerated(0.78) benign(0.001) TCGA-D9-A6EC-06 21 43796757 43796757 G A TMPRSS3 Missense_Mutation p.P363S 0.45 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 21 43902761 43902761 G A RSPH1 Missense_Mutation p.R187C 0.50 tolerated(0.21) benign(0.025) TCGA-D9-A6EC-06 21 44152191 44152191 T G PDE9A Missense_Mutation p.L152V 0.12 tolerated(0.11) benign(0.011) TCGA-D9-A6EC-06 21 44323507 44323507 C T NDUFV3 Silent p.L129L 0.49 TCGA-D9-A6EC-06 21 44438278 44438278 C T PKNOX1 Missense_Mutation p.P220S 0.43 tolerated(0.44) probably_damaging(0.996) TCGA-D9-A6EC-06 21 44488692 44488692 C T CBS Silent p.L81L 0.46 TCGA-D9-A6EC-06 21 44836945 44836945 G A SIK1 Missense_Mutation p.P677S 0.67 tolerated_low_confidence(0.33) benign(0.129) TCGA-D9-A6EC-06 21 45107456 45107456 A C RRP1B Silent p.R401R 0.22 TCGA-D9-A6EC-06 21 45175850 45175850 T C PDXK Missense_Mutation p.V282A 0.27 tolerated(0.97) benign(0.004) TCGA-D9-A6EC-06 21 45514041 45514041 C T TRAPPC10 Missense_Mutation p.S1032F 0.32 tolerated(0.65) benign(0.02) TCGA-D9-A6EC-06 21 45533653 45533653 C T PWP2 Missense_Mutation p.P51S 0.52 tolerated(0.21) probably_damaging(0.978) TCGA-D9-A6EC-06 21 45534562 45534562 A C PWP2 Missense_Mutation p.K128T 0.16 tolerated(0.96) benign(0.006) TCGA-D9-A6EC-06 21 45742854 45742854 C A PFKL Silent p.P473P 0.39 TCGA-D9-A6EC-06 21 45861794 45861794 C T TRPM2 3'UTR 0.30 TCGA-D9-A6EC-06 21 45876569 45876569 C T LRRC3 Silent p.V14V 0.39 TCGA-D9-A6EC-06 21 45876828 45876828 G A LRRC3 Missense_Mutation p.E101K 0.54 tolerated(0.06) possibly_damaging(0.679) TCGA-D9-A6EC-06 21 45945705 45945705 A G TSPEAR Silent p.A389A 0.15 TCGA-D9-A6EC-06 21 45947298 45947298 C T TSPEAR Silent p.V342V 0.46 TCGA-D9-A6EC-06 21 45947394 45947394 T G TSPEAR Missense_Mutation p.E310D 0.08 tolerated(0.07) benign(0.014) TCGA-D9-A6EC-06 21 46102063 46102063 G A KRTAP12-1 5'UTR 0.56 TCGA-D9-A6EC-06 21 46117839 46117839 C T KRTAP10-12 Silent p.S241S 0.49 TCGA-D9-A6EC-06 21 46306757 46306757 A G ITGB2 Missense_Mutation p.L714P 0.11 deleterious(0) probably_damaging(0.96) TCGA-D9-A6EC-06 21 46888441 46888441 G A COL18A1 Missense_Mutation p.G311E 0.92 unknown(0) TCGA-D9-A6EC-06 21 47535813 47535813 G A COL6A2 Missense_Mutation p.G277R 0.18 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 21 47548851 47548851 C T COL6A2 Intron 0.47 TCGA-D9-A6EC-06 21 47552441 47552441 A C COL6A2 Missense_Mutation p.D1012A 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A6EC-06 21 47856974 47856974 A G PCNT Missense_Mutation p.S3027G 0.17 possibly_damaging(0.483) TCGA-D9-A6EC-06 21 47985689 47985689 C T DIP2A Missense_Mutation p.H1410Y 0.96 tolerated(0.43) probably_damaging(0.932) TCGA-D9-A6EC-06 22 17072515 17072515 T C CCT8L2 Missense_Mutation p.K309R 0.23 tolerated(0.39) benign(0.011) TCGA-D9-A6EC-06 22 17443708 17443708 T G GAB4 Missense_Mutation p.E547A 0.26 deleterious(0) possibly_damaging(0.636) TCGA-D9-A6EC-06 22 18020473 18020473 C A CECR2 Missense_Mutation p.P602H 0.34 tolerated(0.06) probably_damaging(0.914) TCGA-D9-A6EC-06 22 18020474 18020474 C T CECR2 Silent p.P602P 0.35 TCGA-D9-A6EC-06 22 18028206 18028206 G A CECR2 Missense_Mutation p.E1056K 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-D9-A6EC-06 22 18072879 18072879 G A SLC25A18 Silent p.E275E 0.44 TCGA-D9-A6EC-06 22 18171783 18171783 T G BCL2L13 Silent p.T87T 0.17 TCGA-D9-A6EC-06 22 18347654 18347654 A C MICAL3 Intron 0.14 TCGA-D9-A6EC-06 22 18613662 18613662 A G TUBA8 Missense_Mutation p.K370R 0.26 tolerated_low_confidence(0.09) benign(0.021) TCGA-D9-A6EC-06 22 19348763 19348763 G A HIRA Silent p.L694L 0.26 TCGA-D9-A6EC-06 22 19363311 19363311 T C HIRA Missense_Mutation p.N540D 0.25 tolerated(0.63) benign(0.086) TCGA-D9-A6EC-06 22 19707193 19707193 A C SEPT5 Missense_Mutation p.K41N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 22 20074194 20074194 T G DGCR8 Missense_Mutation p.N236K 0.05 tolerated(0.31) benign(0.001) TCGA-D9-A6EC-06 22 20079124 20079124 T C DGCR8 Silent p.T491T 0.04 TCGA-D9-A6EC-06 22 20825649 20825649 G A KLHL22 Silent p.A127A 0.48 TCGA-D9-A6EC-06 22 21348893 21348893 A T LZTR1 Silent p.A554A 0.46 TCGA-D9-A6EC-06 22 22323143 22323143 G A TOP3B Nonsense_Mutation p.Q196* 0.46 TCGA-D9-A6EC-06 22 22749751 22749751 C T IGLV7-43 Missense_Mutation p.A92V 0.12 deleterious(0.02) probably_damaging(0.947) TCGA-D9-A6EC-06 22 23237941 23237941 C T IGLL5 3'UTR 0.53 TCGA-D9-A6EC-06 22 23438257 23438257 G A GNAZ Silent p.L125L 0.43 TCGA-D9-A6EC-06 22 23523977 23523977 A G BCR Missense_Mutation p.Q277R 0.09 tolerated_low_confidence(0.05) benign(0.001) TCGA-D9-A6EC-06 22 24445651 24445651 C T CABIN1 Missense_Mutation p.R209W 0.43 deleterious(0) possibly_damaging(0.77) TCGA-D9-A6EC-06 22 24445666 24445666 A G CABIN1 Missense_Mutation p.R214G 0.29 deleterious(0.02) benign(0.178) TCGA-D9-A6EC-06 22 24580241 24580241 A G SUSD2 Missense_Mutation p.T193A 0.14 tolerated(0.11) benign(0.005) TCGA-D9-A6EC-06 22 24718225 24718225 A G SPECC1L Missense_Mutation p.Q426R 0.23 deleterious(0) probably_damaging(0.985) TCGA-D9-A6EC-06 22 25011013 25011013 G A GGT1 Missense_Mutation p.A101T 0.44 tolerated(0.07) benign(0.084) TCGA-D9-A6EC-06 22 25119174 25119174 A C PIWIL3 Missense_Mutation p.F769L 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 22 26291192 26291192 A G MYO18B Missense_Mutation p.Q1538R 0.32 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 22 26422699 26422699 C T MYO18B Silent p.F2253F 0.38 TCGA-D9-A6EC-06 22 26423623 26423623 G A MYO18B Missense_Mutation p.M2561I 0.14 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 22 26829664 26829664 C T ASPHD2 Missense_Mutation p.S28L 0.48 deleterious_low_confidence(0.01) benign(0.001) TCGA-D9-A6EC-06 22 28193279 28193279 G A MN1 Missense_Mutation p.P1085S 0.53 benign(0.068) TCGA-D9-A6EC-06 22 29536301 29536301 C T KREMEN1 Silent p.L402L 0.28 TCGA-D9-A6EC-06 22 29628326 29628326 G A EMID1 Missense_Mutation p.G253E 0.57 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 22 30074201 30074201 C T NF2 Missense_Mutation p.P488L 0.48 tolerated(0.71) benign(0.004) TCGA-D9-A6EC-06 22 30409439 30409439 A G MTMR3 Missense_Mutation p.E471G 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 22 30951568 30951568 C T GAL3ST1 Missense_Mutation p.R215Q 0.56 tolerated(0.19) benign(0.023) TCGA-D9-A6EC-06 22 30972926 30972926 G A PES1 3'UTR 0.50 TCGA-D9-A6EC-06 22 31328379 31328379 A C MORC2 Silent p.A874A 0.08 TCGA-D9-A6EC-06 22 31600542 31600542 G A RNF185 Silent p.L183L 0.17 TCGA-D9-A6EC-06 22 31600543 31600543 G A RNF185 Missense_Mutation p.V184M 0.16 tolerated(0.11) benign(0.01) TCGA-D9-A6EC-06 22 31663018 31663018 C T LIMK2 Nonsense_Mutation p.R343* 0.38 TCGA-D9-A6EC-06 22 32495188 32495188 G A SLC5A1 Silent p.L433L 0.58 TCGA-D9-A6EC-06 22 32498157 32498157 T C SLC5A1 Missense_Mutation p.L533P 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 22 32548082 32548082 C T C22orf42 Splice_Site p.X125_splice 0.33 TCGA-D9-A6EC-06 22 32754338 32754338 C T RFPL3 Missense_Mutation p.R94W 0.47 tolerated(0.19) benign(0) TCGA-D9-A6EC-06 22 32756381 32756381 C T RFPL3 Silent p.S172S 0.37 TCGA-D9-A6EC-06 22 32804215 32804215 G A RTCB Silent p.L63L 0.46 TCGA-D9-A6EC-06 22 35808654 35808654 C T MCM5 Silent p.L357L 0.47 TCGA-D9-A6EC-06 22 35947882 35947882 C T RASD2 Missense_Mutation p.R202C 0.49 deleterious(0.03) benign(0.273) TCGA-D9-A6EC-06 22 36122932 36122932 G A APOL5 Missense_Mutation p.A273T 0.54 tolerated(0.54) benign(0.071) TCGA-D9-A6EC-06 22 36124912 36124912 G A APOL5 Silent p.K423K 0.43 TCGA-D9-A6EC-06 22 36537811 36537811 T C APOL3 Missense_Mutation p.S216G 0.15 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 22 36623914 36623914 A G APOL2 Silent p.L184L 0.27 TCGA-D9-A6EC-06 22 36657659 36657659 G A APOL1 Missense_Mutation p.E85K 0.48 deleterious(0.05) probably_damaging(0.987) TCGA-D9-A6EC-06 22 36661573 36661573 G A APOL1 Missense_Mutation p.G247R 0.46 tolerated(0.07) benign(0.01) TCGA-D9-A6EC-06 22 36678660 36678660 G A MYH9 3'UTR 0.38 TCGA-D9-A6EC-06 22 37398037 37398037 T A TEX33 Silent p.G110G 0.40 TCGA-D9-A6EC-06 22 37637117 37637117 C T RAC2 Intron 0.56 TCGA-D9-A6EC-06 22 37769761 37769761 G A ELFN2 Missense_Mutation p.P605L 0.42 tolerated(0.26) benign(0.15) TCGA-D9-A6EC-06 22 37770778 37770778 T C ELFN2 Missense_Mutation p.Q266R 0.10 tolerated(0.5) benign(0.157) TCGA-D9-A6EC-06 22 37771254 37771254 G A ELFN2 Silent p.V107V 0.47 TCGA-D9-A6EC-06 22 37872964 37872964 T G MFNG Missense_Mutation p.K206T 0.24 deleterious(0.04) benign(0.41) TCGA-D9-A6EC-06 22 38028516 38028516 C T GGA1 Silent p.P601P 0.21 TCGA-D9-A6EC-06 22 38119247 38119247 A C TRIOBP Missense_Mutation p.E228D 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.899) TCGA-D9-A6EC-06 22 38120355 38120355 C T TRIOBP Missense_Mutation p.P598S 0.31 tolerated_low_confidence(0.24) benign(0) TCGA-D9-A6EC-06 22 38243703 38243703 G A ANKRD54 5'Flank 0.27 TCGA-D9-A6EC-06 22 39263048 39263048 G A CBX6 Silent p.P135P 0.35 TCGA-D9-A6EC-06 22 39448774 39448774 G A APOBEC3F 3'UTR 0.56 TCGA-D9-A6EC-06 22 40064308 40064308 C T CACNA1I Silent p.S1372S 0.31 TCGA-D9-A6EC-06 22 40362043 40362043 A G GRAP2 Missense_Mutation p.N114D 0.49 tolerated(0.1) possibly_damaging(0.574) TCGA-D9-A6EC-06 22 41605652 41605652 A T L3MBTL2 Intron 0.45 TCGA-D9-A6EC-06 22 41973345 41973345 G A CSDC2 3'Flank 0.35 TCGA-D9-A6EC-06 22 42120003 42120003 G A MEI1 Missense_Mutation p.D264N 0.32 tolerated(0.1) benign(0.025) TCGA-D9-A6EC-06 22 42273324 42273324 C T SREBF2 Missense_Mutation p.S493F 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 22 42607704 42607704 G A TCF20 Missense_Mutation p.P1203L 0.49 benign(0.354) TCGA-D9-A6EC-06 22 42780918 42780918 A T NFAM1 3'UTR 0.23 TCGA-D9-A6EC-06 22 42967164 42967164 G A SERHL2 Missense_Mutation p.C229Y 0.14 tolerated(1) benign(0.009) TCGA-D9-A6EC-06 22 43023314 43023314 T G CYB5R3 Missense_Mutation p.N243T 0.17 deleterious(0) probably_damaging(0.931) TCGA-D9-A6EC-06 22 43089082 43089082 C T A4GALT Nonsense_Mutation p.W292* 0.32 TCGA-D9-A6EC-06 22 44063095 44063095 C T EFCAB6 Silent p.V624V 0.44 TCGA-D9-A6EC-06 22 44277504 44277504 C T PNPLA5 Missense_Mutation p.G378D 0.47 tolerated(0.17) benign(0.037) TCGA-D9-A6EC-06 22 44277505 44277505 C T PNPLA5 Missense_Mutation p.G378S 0.47 tolerated(0.09) benign(0.232) TCGA-D9-A6EC-06 22 44692587 44692587 C T KIAA1644 Silent p.A82A 0.49 TCGA-D9-A6EC-06 22 45130909 45130909 G A PRR5 Silent p.G209G 0.39 TCGA-D9-A6EC-06 22 45258325 45258325 G A PRR5-ARHGAP8 Silent p.P594P 0.50 TCGA-D9-A6EC-06 22 45312348 45312348 G A PHF21B Missense_Mutation p.P126S 0.45 tolerated_low_confidence(0.13) benign(0.007) TCGA-D9-A6EC-06 22 45802451 45802451 C T SMC1B Missense_Mutation p.E169K 0.40 tolerated(0.07) benign(0.086) TCGA-D9-A6EC-06 22 45959103 45959103 C T FBLN1 Intron 0.49 TCGA-D9-A6EC-06 22 46238906 46238906 C T ATXN10 Missense_Mutation p.L425F 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 22 46239577 46239577 T G ATXN10 3'UTR 0.21 TCGA-D9-A6EC-06 22 46449682 46449682 C T C22orf26 Missense_Mutation p.G98S 0.25 tolerated_low_confidence(0.59) benign(0.123) TCGA-D9-A6EC-06 22 46785381 46785381 G A CELSR1 Missense_Mutation p.R2121C 0.39 deleterious(0) probably_damaging(0.915) TCGA-D9-A6EC-06 22 50278621 50278621 T G ZBED4 Missense_Mutation p.S437R 0.14 tolerated(0.17) benign(0.003) TCGA-D9-A6EC-06 22 50297445 50297445 T A ALG12 3'UTR 0.17 TCGA-D9-A6EC-06 22 50664558 50664558 G A TUBGCP6 Missense_Mutation p.P585L 0.44 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 22 50667857 50667857 C A TUBGCP6 Missense_Mutation p.L422F 0.45 tolerated(0.49) benign(0.346) TCGA-D9-A6EC-06 22 50667868 50667868 G A TUBGCP6 Silent p.L419L 0.42 TCGA-D9-A6EC-06 22 50719185 50719185 A C PLXNB2 Silent p.S1327S 0.13 TCGA-D9-A6EC-06 22 50719572 50719572 G A PLXNB2 Nonsense_Mutation p.Q1237* 0.15 TCGA-D9-A6EC-06 22 50853016 50853016 C T PPP6R2 Silent p.I150I 0.46 TCGA-D9-A6EC-06 22 50894660 50894660 T G SBF1 Silent p.S1417S 0.22 TCGA-D9-A6EC-06 22 50943316 50943316 G A LMF2 Missense_Mutation p.S451F 0.42 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 22 50987572 50987572 A G KLHDC7B Missense_Mutation p.N326S 0.35 tolerated(0.25) benign(0.009) TCGA-D9-A6EC-06 2 100925672 100925672 G A LONRF2 Missense_Mutation p.S232L 0.28 tolerated(1) benign(0.019) TCGA-D9-A6EC-06 2 101565882 101565882 A C NPAS2 Missense_Mutation p.K180Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 2 101611999 101611999 C T NPAS2 Silent p.V810V 0.68 TCGA-D9-A6EC-06 2 101666881 101666881 G A TBC1D8 Missense_Mutation p.P270L 0.79 tolerated(0.09) probably_damaging(0.948) TCGA-D9-A6EC-06 2 102632498 102632498 G A IL1R2 Silent p.K166K 0.30 TCGA-D9-A6EC-06 2 10264846 10264846 G A RRM2 Silent p.V206V 0.48 TCGA-D9-A6EC-06 2 10264847 10264847 G A RRM2 Missense_Mutation p.E207K 0.48 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-D9-A6EC-06 2 102828613 102828613 C T IL1RL2 Missense_Mutation p.H235Y 0.23 deleterious(0) benign(0.001) TCGA-D9-A6EC-06 2 102959621 102959621 G A IL1RL1 Missense_Mutation p.E270K 0.29 tolerated(0.38) benign(0.006) TCGA-D9-A6EC-06 2 102959630 102959630 A T IL1RL1 Missense_Mutation p.N273Y 0.65 tolerated(0.2) benign(0.128) TCGA-D9-A6EC-06 2 103299903 103299903 C T SLC9A2 Silent p.F396F 0.60 TCGA-D9-A6EC-06 2 107423254 107423254 G A ST6GAL2 Silent p.L490L 0.25 TCGA-D9-A6EC-06 2 107423378 107423378 C T ST6GAL2 Missense_Mutation p.R449K 0.28 benign(0.008) TCGA-D9-A6EC-06 2 108627088 108627088 G A SLC5A7 Missense_Mutation p.G505E 0.54 tolerated(0.15) benign(0.321) TCGA-D9-A6EC-06 2 108869887 108869887 G A SULT1C3 Missense_Mutation p.E130K 0.59 tolerated(0.81) benign(0.338) TCGA-D9-A6EC-06 2 109369578 109369578 A G RANBP2 Missense_Mutation p.D627G 0.35 deleterious(0) benign(0.03) TCGA-D9-A6EC-06 2 109374986 109374986 C T RANBP2 Missense_Mutation p.H862Y 0.31 deleterious(0.03) benign(0.127) TCGA-D9-A6EC-06 2 109524360 109524360 G A EDAR Missense_Mutation p.H307Y 0.25 tolerated(0.08) probably_damaging(0.979) TCGA-D9-A6EC-06 2 110926051 110926051 A C NPHP1 Missense_Mutation p.L201R 0.30 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 2 111789222 111789222 G A ACOXL Missense_Mutation p.D434N 0.26 deleterious(0.02) possibly_damaging(0.669) TCGA-D9-A6EC-06 2 112732865 112732865 G A MERTK Splice_Site p.X321_splice 0.21 TCGA-D9-A6EC-06 2 112779152 112779152 T G MERTK Missense_Mutation p.S781R 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 112786022 112786022 T G MERTK Missense_Mutation p.L861V 0.37 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 2 112786388 112786388 G A MERTK Missense_Mutation p.D983N 0.65 deleterious_low_confidence(0.05) possibly_damaging(0.494) TCGA-D9-A6EC-06 2 113147192 113147192 A C RGPD8 Missense_Mutation p.N1110K 0.11 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 2 113321967 113321967 C T POLR1B Missense_Mutation p.P546L 0.24 tolerated(0.32) benign(0.001) TCGA-D9-A6EC-06 2 113670619 113670619 G A IL37 Silent p.V10V 0.64 TCGA-D9-A6EC-06 2 113832744 113832744 G A IL1F10 Missense_Mutation p.E88K 0.63 deleterious(0.03) benign(0.119) TCGA-D9-A6EC-06 2 113885247 113885247 C T IL1RN Intron 0.29 TCGA-D9-A6EC-06 2 11389887 11389887 T G ROCK2 Missense_Mutation p.K121T 0.09 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 113939968 113939968 A G PSD4 5'UTR 0.16 TCGA-D9-A6EC-06 2 113940058 113940058 G A PSD4 Missense_Mutation p.D9N 0.43 tolerated_low_confidence(0.08) benign(0.004) TCGA-D9-A6EC-06 2 114256951 114256951 G A FOXD4L1 Missense_Mutation p.E40K 0.56 tolerated(0.06) benign(0.083) TCGA-D9-A6EC-06 2 114257463 114257463 G A FOXD4L1 Silent p.P210P 0.37 TCGA-D9-A6EC-06 2 114257464 114257464 G A FOXD4L1 Missense_Mutation p.G211R 0.36 deleterious(0.04) benign(0.066) TCGA-D9-A6EC-06 2 11586643 11586643 T G E2F6 Missense_Mutation p.N269T 0.11 tolerated(0.35) unknown(0) TCGA-D9-A6EC-06 2 11755269 11755269 A C GREB1 Missense_Mutation p.T1059P 0.19 deleterious(0) possibly_damaging(0.843) TCGA-D9-A6EC-06 2 118582580 118582580 G A DDX18 Missense_Mutation p.R424Q 0.34 tolerated(0.25) benign(0.081) TCGA-D9-A6EC-06 2 119731985 119731985 C T MARCO Silent p.A179A 0.13 TCGA-D9-A6EC-06 2 120003312 120003312 A G STEAP3 Silent p.A90A 0.15 TCGA-D9-A6EC-06 2 122217648 122217648 G A CLASP1 Silent p.F362F 0.23 TCGA-D9-A6EC-06 2 122488508 122488508 T A NIFK Missense_Mutation p.K175N 0.18 deleterious(0.04) benign(0.311) TCGA-D9-A6EC-06 2 1251210 1251210 C T SNTG2 Missense_Mutation p.P334S 0.22 deleterious(0.01) possibly_damaging(0.721) TCGA-D9-A6EC-06 2 125192257 125192257 C T CNTNAP5 Silent p.L242L 0.27 TCGA-D9-A6EC-06 2 125555867 125555867 G C CNTNAP5 Missense_Mutation p.D1062H 0.22 deleterious(0.03) possibly_damaging(0.629) TCGA-D9-A6EC-06 2 128393297 128393297 G A MYO7B Missense_Mutation p.E1915K 0.86 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 2 128415079 128415079 G A LIMS2 Silent p.S47S 0.54 TCGA-D9-A6EC-06 2 128415080 128415080 G A LIMS2 Missense_Mutation p.S47F 0.53 deleterious(0.03) benign(0.319) TCGA-D9-A6EC-06 2 128522423 128522423 T G WDR33 Missense_Mutation p.K202T 0.06 deleterious(0.04) unknown(0) TCGA-D9-A6EC-06 2 131704227 131704227 T A ARHGEF4 Intron 0.20 TCGA-D9-A6EC-06 2 131897828 131897828 C T PLEKHB2 Missense_Mutation p.P179L 0.21 deleterious(0.01) benign(0.394) TCGA-D9-A6EC-06 2 132021420 132021420 C T POTEE Missense_Mutation p.P798S 0.64 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-D9-A6EC-06 2 132021613 132021613 C T POTEE Missense_Mutation p.T862I 0.53 deleterious_low_confidence(0.05) possibly_damaging(0.636) TCGA-D9-A6EC-06 2 132290946 132290946 G A CCDC74A Missense_Mutation p.R371Q 0.24 tolerated(0.1) benign(0.102) TCGA-D9-A6EC-06 2 132509098 132509098 C T C2orf27A 5'UTR 0.57 TCGA-D9-A6EC-06 2 133014567 133014567 G A MIR663B RNA 0.12 TCGA-D9-A6EC-06 2 133403193 133403193 G A LYPD1 3'UTR 0.30 TCGA-D9-A6EC-06 2 133541788 133541788 G A NCKAP5 Missense_Mutation p.P866S 0.55 deleterious(0.04) probably_damaging(1) TCGA-D9-A6EC-06 2 135628535 135628535 G A ACMSD Missense_Mutation p.G194E 0.37 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 135851207 135851207 A G RAB3GAP1 Silent p.Q102Q 0.28 TCGA-D9-A6EC-06 2 136418912 136418912 C T R3HDM1 Missense_Mutation p.H666Y 0.22 tolerated(0.17) possibly_damaging(0.589) TCGA-D9-A6EC-06 2 136432945 136432945 A G R3HDM1 Missense_Mutation p.I697M 0.15 tolerated(1) benign(0.006) TCGA-D9-A6EC-06 2 136566438 136566438 C T LCT Missense_Mutation p.R1160K 0.27 tolerated(1) benign(0.002) TCGA-D9-A6EC-06 2 136566679 136566679 G A LCT Missense_Mutation p.P1080S 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-D9-A6EC-06 2 136872778 136872778 G A CXCR4 Silent p.T244T 0.21 TCGA-D9-A6EC-06 2 137814460 137814460 C T THSD7B Missense_Mutation p.R204C 0.68 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 2 137852481 137852481 C T THSD7B Missense_Mutation p.S330F 0.25 deleterious(0) probably_damaging(0.965) TCGA-D9-A6EC-06 2 137988680 137988680 C T THSD7B Missense_Mutation p.P597L 0.16 deleterious(0) probably_damaging(0.958) TCGA-D9-A6EC-06 2 138373801 138373801 G A THSD7B Silent p.L1163L 0.28 TCGA-D9-A6EC-06 2 138413161 138413161 G A THSD7B Missense_Mutation p.D1349N 0.19 tolerated(0.32) unknown(0) TCGA-D9-A6EC-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.38 deleterious(0.02) unknown(0) TCGA-D9-A6EC-06 2 139428746 139428746 C T NXPH2 Missense_Mutation p.E181K 0.28 deleterious(0.02) possibly_damaging(0.489) TCGA-D9-A6EC-06 2 139429218 139429218 C T NXPH2 Silent p.K23K 0.41 TCGA-D9-A6EC-06 2 141200149 141200149 C T LRP1B Silent p.T3446T 0.27 TCGA-D9-A6EC-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.68 TCGA-D9-A6EC-06 2 141356240 141356240 C T LRP1B Missense_Mutation p.G2385E 0.44 probably_damaging(0.931) TCGA-D9-A6EC-06 2 141777515 141777515 C T LRP1B Missense_Mutation p.G649E 0.60 probably_damaging(0.937) TCGA-D9-A6EC-06 2 141946141 141946141 T A LRP1B Missense_Mutation p.M288L 0.61 benign(0.008) TCGA-D9-A6EC-06 2 145157127 145157127 A C ZEB2 Missense_Mutation p.L543V 0.27 deleterious(0.02) possibly_damaging(0.744) TCGA-D9-A6EC-06 2 1488382 1488382 G A TPO Silent p.R451R 0.32 TCGA-D9-A6EC-06 2 149225945 149225945 C T MBD5 Missense_Mutation p.P145S 0.50 deleterious(0.02) possibly_damaging(0.803) TCGA-D9-A6EC-06 2 149243352 149243352 C T MBD5 Silent p.L963L 0.64 TCGA-D9-A6EC-06 2 149247046 149247046 T G MBD5 Missense_Mutation p.L1049R 0.19 tolerated_low_confidence(0.34) unknown(0) TCGA-D9-A6EC-06 2 149868101 149868101 G A KIF5C Missense_Mutation p.G929R 0.35 deleterious(0.01) benign(0.308) TCGA-D9-A6EC-06 2 152321017 152321017 A G RIF1 Silent p.E1661E 0.21 TCGA-D9-A6EC-06 2 152322117 152322117 A G RIF1 Missense_Mutation p.E2028G 0.16 deleterious_low_confidence(0.01) benign(0.159) TCGA-D9-A6EC-06 2 152352862 152352862 C T NEB Missense_Mutation p.M8138I 0.75 benign(0.043) TCGA-D9-A6EC-06 2 152419197 152419197 G A NEB Silent p.F6273F 0.55 TCGA-D9-A6EC-06 2 152472610 152472610 A C NEB Missense_Mutation p.L3732R 0.23 benign(0.445) TCGA-D9-A6EC-06 2 152484119 152484119 T C NEB Missense_Mutation p.K3354R 0.27 benign(0.016) TCGA-D9-A6EC-06 2 152512757 152512757 A G NEB Silent p.T2135T 0.10 TCGA-D9-A6EC-06 2 152520238 152520238 C T NEB Missense_Mutation p.E1863K 0.29 probably_damaging(0.94) TCGA-D9-A6EC-06 2 152544864 152544864 A G NEB Missense_Mutation p.I786T 0.10 benign(0.175) TCGA-D9-A6EC-06 2 152830202 152830202 C T CACNB4 Intron 0.39 TCGA-D9-A6EC-06 2 155157962 155157962 C T GALNT13 Missense_Mutation p.S339F 0.25 deleterious(0) probably_damaging(0.966) TCGA-D9-A6EC-06 2 15564465 15564465 C T NBAS Missense_Mutation p.E851K 0.63 tolerated(0.52) benign(0.004) TCGA-D9-A6EC-06 2 158115350 158115350 C T GALNT5 Silent p.A252A 0.50 TCGA-D9-A6EC-06 2 158167768 158167768 G A GALNT5 Missense_Mutation p.G911R 0.25 deleterious(0.03) possibly_damaging(0.844) TCGA-D9-A6EC-06 2 158978118 158978118 G A UPP2 Missense_Mutation p.D275N 0.35 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 2 160602335 160602335 C T MARCH7 Missense_Mutation p.S134L 0.59 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 2 160665011 160665011 T G LY75-CD302 Missense_Mutation p.N1591H 0.39 tolerated(0.22) probably_damaging(0.955) TCGA-D9-A6EC-06 2 160667040 160667040 G A LY75-CD302 Missense_Mutation p.H1566Y 0.64 tolerated(0.09) benign(0) TCGA-D9-A6EC-06 2 160671981 160671981 C T LY75-CD302 Missense_Mutation p.G1495E 0.22 tolerated(0.07) benign(0.333) TCGA-D9-A6EC-06 2 160734850 160734850 T A LY75-CD302 Missense_Mutation p.N587Y 0.52 deleterious(0.01) probably_damaging(0.991) TCGA-D9-A6EC-06 2 160734851 160734851 C T LY75-CD302 Nonsense_Mutation p.W586* 0.54 TCGA-D9-A6EC-06 2 160806260 160806260 C T PLA2R1 Missense_Mutation p.G1190S 0.24 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 2 160826666 160826666 C T PLA2R1 Missense_Mutation p.E885K 0.78 tolerated(0.32) benign(0.05) TCGA-D9-A6EC-06 2 16086157 16086157 G A MYCN Missense_Mutation p.E445K 0.22 deleterious(0.03) possibly_damaging(0.522) TCGA-D9-A6EC-06 2 160898661 160898661 G A PLA2R1 Missense_Mutation p.P181L 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 162272881 162272881 A T TBR1 5'UTR 0.29 TCGA-D9-A6EC-06 2 162738949 162738949 G A SLC4A10 Missense_Mutation p.D397N 0.40 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 162849796 162849796 A C DPP4 Silent p.P766P 0.09 TCGA-D9-A6EC-06 2 162873617 162873617 C T DPP4 Splice_Site p.X490_splice 0.60 TCGA-D9-A6EC-06 2 163029330 163029330 G A FAP Silent p.F724F 0.69 TCGA-D9-A6EC-06 2 163074648 163074648 C T FAP Missense_Mutation p.E204K 0.59 deleterious(0.03) benign(0.236) TCGA-D9-A6EC-06 2 163279922 163279922 G A KCNH7 Missense_Mutation p.P693L 0.66 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 2 163292089 163292089 G A KCNH7 Missense_Mutation p.L525F 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 1653315 1653315 C T PXDN Missense_Mutation p.G746D 0.55 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 2 165552335 165552335 C T COBLL1 Missense_Mutation p.E561K 0.59 deleterious(0.04) benign(0.091) TCGA-D9-A6EC-06 2 165557189 165557189 C T COBLL1 Missense_Mutation p.E474K 0.49 tolerated(0.11) benign(0.045) TCGA-D9-A6EC-06 2 165947152 165947152 C T SCN3A Missense_Mutation p.M1837I 0.64 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 2 166167016 166167016 C T SCN2A Missense_Mutation p.S294F 0.22 tolerated(0.16) benign(0.336) TCGA-D9-A6EC-06 2 166201302 166201302 A G SCN2A Missense_Mutation p.I934V 0.31 tolerated(0.08) benign(0.045) TCGA-D9-A6EC-06 2 166848524 166848524 C T SCN1A Missense_Mutation p.G1754E 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 167055948 167055948 G A SCN9A Missense_Mutation p.S1723F 0.62 tolerated(0.07) probably_damaging(1) TCGA-D9-A6EC-06 2 167085291 167085291 G A SCN9A Silent p.A1361A 0.26 TCGA-D9-A6EC-06 2 167141240 167141240 G A SCN9A Missense_Mutation p.S566F 0.73 tolerated(0.14) benign(0.394) TCGA-D9-A6EC-06 2 167263128 167263128 G A SCN7A Silent p.S1337S 0.54 TCGA-D9-A6EC-06 2 167322420 167322420 G A SCN7A Silent p.L248L 0.28 TCGA-D9-A6EC-06 2 168099781 168099781 G A XIRP2 Missense_Mutation p.D627N 0.57 probably_damaging(0.974) TCGA-D9-A6EC-06 2 168100350 168100350 T A XIRP2 Silent p.P816P 0.57 TCGA-D9-A6EC-06 2 168100453 168100453 G A XIRP2 Missense_Mutation p.D851N 0.59 probably_damaging(1) TCGA-D9-A6EC-06 2 168103954 168103954 C T XIRP2 Missense_Mutation p.L2018F 0.29 possibly_damaging(0.897) TCGA-D9-A6EC-06 2 168104667 168104667 G A XIRP2 Missense_Mutation p.M2255I 0.56 possibly_damaging(0.487) TCGA-D9-A6EC-06 2 168726145 168726145 G A B3GALT1 Missense_Mutation p.R199Q 0.19 tolerated(0.18) possibly_damaging(0.459) TCGA-D9-A6EC-06 2 168986231 168986231 G A STK39 Nonsense_Mutation p.Q338* 0.19 TCGA-D9-A6EC-06 2 169792776 169792776 G A ABCB11 Silent p.A926A 0.35 TCGA-D9-A6EC-06 2 169938333 169938333 T C DHRS9 Missense_Mutation p.L81P 0.10 deleterious(0.03) benign(0.162) TCGA-D9-A6EC-06 2 170062912 170062912 C T LRP2 Missense_Mutation p.A2440T 0.50 benign(0.001) TCGA-D9-A6EC-06 2 170127604 170127604 G A LRP2 Silent p.F710F 0.24 TCGA-D9-A6EC-06 2 170492691 170492691 T C PPIG Silent p.A369A 0.14 TCGA-D9-A6EC-06 2 170531145 170531145 T G CCDC173 Missense_Mutation p.Q201H 0.17 deleterious(0) possibly_damaging(0.894) TCGA-D9-A6EC-06 2 171509778 171509778 C T MYO3B 3'UTR 0.71 TCGA-D9-A6EC-06 2 172409985 172409985 T G CYBRD1 Missense_Mutation p.L178V 0.17 tolerated(0.22) benign(0.004) TCGA-D9-A6EC-06 2 173894920 173894920 T A RAPGEF4 Missense_Mutation p.F863I 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-D9-A6EC-06 2 174229622 174229622 C T CDCA7 Missense_Mutation p.L267F 0.38 tolerated(0.59) possibly_damaging(0.844) TCGA-D9-A6EC-06 2 175618973 175618973 C T CHRNA1 Missense_Mutation p.D197N 0.60 tolerated(0.06) probably_damaging(0.947) TCGA-D9-A6EC-06 2 176988775 176988775 A G HOXD9 Missense_Mutation p.T311A 0.06 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 17773475 17773475 T C VSNL1 Missense_Mutation p.L45P 0.39 tolerated(0.34) possibly_damaging(0.653) TCGA-D9-A6EC-06 2 178095500 178095500 A C NFE2L2 3'UTR 0.26 TCGA-D9-A6EC-06 2 178416260 178416260 T G TTC30B Missense_Mutation p.K411T 0.06 tolerated(0.16) benign(0.008) TCGA-D9-A6EC-06 2 179404292 179404292 C T TTN Missense_Mutation p.E32834K 0.63 TCGA-D9-A6EC-06 2 179410548 179410548 G A TTN Silent p.F31805F 0.32 TCGA-D9-A6EC-06 2 179413442 179413442 C T TTN Missense_Mutation p.D30971N 0.66 TCGA-D9-A6EC-06 2 179416817 179416817 A G TTN Silent p.T30270T 0.42 TCGA-D9-A6EC-06 2 179428659 179428659 A C TTN Silent p.A27400A 0.25 TCGA-D9-A6EC-06 2 179440323 179440323 C T TTN Silent p.E23512E 0.61 TCGA-D9-A6EC-06 2 179447794 179447794 C T TTN Missense_Mutation p.M21912I 0.42 TCGA-D9-A6EC-06 2 179457754 179457754 C T TTN Missense_Mutation p.D19698N 0.27 TCGA-D9-A6EC-06 2 179458155 179458155 C T TTN Missense_Mutation p.D19594N 0.31 TCGA-D9-A6EC-06 2 179458387 179458387 C T TTN Missense_Mutation p.G19547E 0.57 TCGA-D9-A6EC-06 2 179466028 179466028 C T TTN Missense_Mutation p.E18566K 0.27 TCGA-D9-A6EC-06 2 179466414 179466414 T A TTN Missense_Mutation p.K18468M 0.29 TCGA-D9-A6EC-06 2 179469771 179469771 C T TTN Missense_Mutation p.V18045I 0.61 TCGA-D9-A6EC-06 2 179470335 179470335 C T TTN Missense_Mutation p.G17896E 0.65 TCGA-D9-A6EC-06 2 179472238 179472238 T G TTN Missense_Mutation p.K17726T 0.29 TCGA-D9-A6EC-06 2 179481673 179481673 C T TTN Silent p.T15981T 0.26 TCGA-D9-A6EC-06 2 179490110 179490110 G A TTN Missense_Mutation p.S14813L 0.58 TCGA-D9-A6EC-06 2 179497142 179497142 T C TTN Splice_Site p.X14494_splice 0.31 TCGA-D9-A6EC-06 2 179500897 179500897 T G TTN Missense_Mutation p.S13801R 0.42 TCGA-D9-A6EC-06 2 179529612 179529612 G A TTN Missense_Mutation p.P12029S 0.26 TCGA-D9-A6EC-06 2 179553441 179553441 G A TTN Silent p.F10720F 0.26 TCGA-D9-A6EC-06 2 179553827 179553827 T G TTN Missense_Mutation p.K10683T 0.22 TCGA-D9-A6EC-06 2 179558708 179558708 A C TTN Missense_Mutation p.V10485G 0.29 TCGA-D9-A6EC-06 2 179572401 179572401 C T TTN Silent p.K9631K 0.62 TCGA-D9-A6EC-06 2 179575605 179575605 C T TTN Missense_Mutation p.D9407N 0.31 TCGA-D9-A6EC-06 2 179582947 179582947 T A TTN Missense_Mutation p.E8262D 0.34 TCGA-D9-A6EC-06 2 179583188 179583188 C T TTN Silent p.E8215E 0.16 TCGA-D9-A6EC-06 2 179583252 179583252 T C TTN Missense_Mutation p.Y8194C 0.69 TCGA-D9-A6EC-06 2 179592872 179592872 C T TTN Missense_Mutation p.G6560E 0.52 TCGA-D9-A6EC-06 2 179598552 179598552 T C TTN Silent p.Q5188Q 0.29 TCGA-D9-A6EC-06 2 179604713 179604713 G A TTN Missense_Mutation p.S4416F 0.31 TCGA-D9-A6EC-06 2 179610943 179610943 G A TTN Intron 0.67 TCGA-D9-A6EC-06 2 179611156 179611156 A C TTN Intron 0.68 TCGA-D9-A6EC-06 2 179612343 179612343 C T TTN Intron 0.31 TCGA-D9-A6EC-06 2 179612372 179612372 C T TTN Intron 0.30 TCGA-D9-A6EC-06 2 179613097 179613097 G A TTN Intron 0.27 TCGA-D9-A6EC-06 2 179615714 179615714 C T TTN Intron 0.29 TCGA-D9-A6EC-06 2 179616465 179616465 A G TTN Intron 0.27 TCGA-D9-A6EC-06 2 179634635 179634635 G A TTN Silent p.I2891I 0.66 TCGA-D9-A6EC-06 2 179635956 179635956 C T TTN Missense_Mutation p.A2700T 0.22 TCGA-D9-A6EC-06 2 179641823 179641823 C T TTN Intron 0.63 TCGA-D9-A6EC-06 2 179642648 179642648 C T TTN Silent p.R1421R 0.68 TCGA-D9-A6EC-06 2 179659966 179659966 C T TTN Missense_Mutation p.A310T 0.52 TCGA-D9-A6EC-06 2 179664256 179664256 G A TTN Missense_Mutation p.S291F 0.37 TCGA-D9-A6EC-06 2 179702224 179702224 G A CCDC141 Missense_Mutation p.S1241F 0.48 deleterious(0.03) benign(0.069) TCGA-D9-A6EC-06 2 179730547 179730547 G A CCDC141 Missense_Mutation p.R891W 0.64 deleterious(0) possibly_damaging(0.742) TCGA-D9-A6EC-06 2 182543260 182543260 C T NEUROD1 Missense_Mutation p.E110K 0.72 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 2 183088604 183088604 G A PDE1A Missense_Mutation p.H271Y 0.38 deleterious(0) possibly_damaging(0.598) TCGA-D9-A6EC-06 2 183094850 183094850 G A PDE1A Silent p.T202T 0.73 TCGA-D9-A6EC-06 2 1842994 1842994 C T MYT1L Missense_Mutation p.E1001K 0.31 deleterious(0) possibly_damaging(0.889) TCGA-D9-A6EC-06 2 185801153 185801153 G A ZNF804A Missense_Mutation p.E344K 0.43 tolerated(0.13) probably_damaging(0.971) TCGA-D9-A6EC-06 2 185802358 185802358 G A ZNF804A Missense_Mutation p.M745I 0.40 tolerated(0.44) benign(0.018) TCGA-D9-A6EC-06 2 185802491 185802491 C T ZNF804A Missense_Mutation p.H790Y 0.28 tolerated(1) benign(0) TCGA-D9-A6EC-06 2 185802674 185802674 G A ZNF804A Missense_Mutation p.E851K 0.25 tolerated(0.07) benign(0.001) TCGA-D9-A6EC-06 2 185803067 185803067 G A ZNF804A Missense_Mutation p.G982R 0.36 tolerated(0.13) probably_damaging(0.998) TCGA-D9-A6EC-06 2 185803068 185803068 G A ZNF804A Missense_Mutation p.G982E 0.34 tolerated(0.56) probably_damaging(0.998) TCGA-D9-A6EC-06 2 185803345 185803345 C T ZNF804A Silent p.L1074L 0.69 TCGA-D9-A6EC-06 2 186670588 186670588 G A FSIP2 Missense_Mutation p.E5608K 0.57 benign(0) TCGA-D9-A6EC-06 2 18745157 18745157 G A NT5C1B Missense_Mutation p.H580Y 0.61 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 187693428 187693428 C T ZSWIM2 Nonsense_Mutation p.W395* 0.59 TCGA-D9-A6EC-06 2 187703824 187703824 G A ZSWIM2 Missense_Mutation p.P119L 0.31 tolerated(0.12) benign(0.025) TCGA-D9-A6EC-06 2 188228123 188228123 C T CALCRL Missense_Mutation p.A203T 0.67 tolerated(0.32) benign(0.001) TCGA-D9-A6EC-06 2 189859504 189859504 G A COL3A1 Missense_Mutation p.G468R 0.59 unknown(0) TCGA-D9-A6EC-06 2 189864057 189864057 G A COL3A1 Missense_Mutation p.G690E 0.36 unknown(0) TCGA-D9-A6EC-06 2 189873692 189873692 C T COL3A1 Missense_Mutation p.P1190S 0.63 unknown(0) TCGA-D9-A6EC-06 2 190611207 190611207 A C ANKAR Missense_Mutation p.K1387Q 0.22 tolerated_low_confidence(0.3) benign(0.005) TCGA-D9-A6EC-06 2 1926520 1926520 G A MYT1L Missense_Mutation p.L341F 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D9-A6EC-06 2 1926983 1926983 C T MYT1L Silent p.K186K 0.29 TCGA-D9-A6EC-06 2 192701073 192701073 C T SDPR Missense_Mutation p.G285E 0.65 deleterious(0.05) possibly_damaging(0.804) TCGA-D9-A6EC-06 2 192701141 192701141 G A SDPR Silent p.I262I 0.30 TCGA-D9-A6EC-06 2 192701319 192701319 G A SDPR Missense_Mutation p.S203F 0.31 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 2 196722110 196722110 G A DNAH7 Missense_Mutation p.S2802L 0.62 tolerated(0.07) benign(0.209) TCGA-D9-A6EC-06 2 196722310 196722310 G A DNAH7 Silent p.F2735F 0.24 TCGA-D9-A6EC-06 2 196723312 196723312 C T DNAH7 Silent p.A2651A 0.40 TCGA-D9-A6EC-06 2 196729643 196729643 G A DNAH7 Missense_Mutation p.H2246Y 0.35 deleterious(0.01) benign(0.001) TCGA-D9-A6EC-06 2 196738409 196738409 C T DNAH7 Missense_Mutation p.R2099Q 0.52 deleterious(0.01) probably_damaging(0.976) TCGA-D9-A6EC-06 2 196740407 196740407 C T DNAH7 Missense_Mutation p.G2093E 0.20 deleterious(0) benign(0.33) TCGA-D9-A6EC-06 2 196753154 196753154 G A DNAH7 Missense_Mutation p.S1745F 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 196762413 196762413 G A DNAH7 Missense_Mutation p.S1542F 0.62 deleterious(0) possibly_damaging(0.498) TCGA-D9-A6EC-06 2 197066071 197066071 G A HECW2 Missense_Mutation p.P1550L 0.31 deleterious(0) benign(0.166) TCGA-D9-A6EC-06 2 197184147 197184147 G A HECW2 Silent p.I489I 0.32 TCGA-D9-A6EC-06 2 197767465 197767465 A C PGAP1 Missense_Mutation p.D217E 0.12 tolerated(0.15) benign(0.047) TCGA-D9-A6EC-06 2 198948640 198948640 T C PLCL1 Silent p.R133R 0.10 TCGA-D9-A6EC-06 2 20096798 20096798 T G TTC32 Missense_Mutation p.I136L 0.60 tolerated(0.64) benign(0.002) TCGA-D9-A6EC-06 2 201460056 201460056 G A AOX1 Missense_Mutation p.M55I 0.14 deleterious(0) benign(0.12) TCGA-D9-A6EC-06 2 201478607 201478607 G A AOX1 Missense_Mutation p.G510E 0.41 deleterious(0.02) probably_damaging(0.932) TCGA-D9-A6EC-06 2 201534361 201534361 A T AOX1 Missense_Mutation p.S1288C 0.08 tolerated(0.07) benign(0.003) TCGA-D9-A6EC-06 2 201756955 201756955 T G NIF3L1 Missense_Mutation p.F97V 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 201887578 201887578 T G FAM126B Missense_Mutation p.K43N 0.23 deleterious(0.04) possibly_damaging(0.601) TCGA-D9-A6EC-06 2 202410312 202410312 C T ALS2CR11 Silent p.T372T 0.24 TCGA-D9-A6EC-06 2 203329679 203329679 G A BMPR2 Missense_Mutation p.G75E 0.20 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 2 204111573 204111573 T G CYP20A1 Missense_Mutation p.F73C 0.27 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 2 204304836 204304836 T G RAPH1 Missense_Mutation p.K1026T 0.09 unknown(0) TCGA-D9-A6EC-06 2 204320166 204320166 T C RAPH1 Silent p.K432K 0.08 TCGA-D9-A6EC-06 2 20518362 20518362 T G PUM2 Missense_Mutation p.K32N 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 2 206166382 206166382 C T PARD3B Missense_Mutation p.P801S 0.18 tolerated(0.22) benign(0.167) TCGA-D9-A6EC-06 2 206610527 206610527 C T NRP2 Missense_Mutation p.P567S 0.72 tolerated(0.65) possibly_damaging(0.784) TCGA-D9-A6EC-06 2 206630267 206630267 A T NRP2 Missense_Mutation p.T793S 0.35 tolerated(0.96) benign(0.016) TCGA-D9-A6EC-06 2 206869456 206869456 A G INO80D Missense_Mutation p.L907P 0.15 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-D9-A6EC-06 2 207041985 207041985 G A GPR1 5'UTR 0.54 TCGA-D9-A6EC-06 2 207171483 207171483 A C ZDBF2 Missense_Mutation p.D744A 0.06 tolerated(0.1) possibly_damaging(0.857) TCGA-D9-A6EC-06 2 207174695 207174695 C T ZDBF2 Missense_Mutation p.P1815S 0.41 tolerated(0.07) possibly_damaging(0.641) TCGA-D9-A6EC-06 2 207569647 207569647 C T DYTN Missense_Mutation p.E135K 0.19 tolerated(0.09) possibly_damaging(0.658) TCGA-D9-A6EC-06 2 207572175 207572175 G A DYTN Silent p.F49F 0.26 TCGA-D9-A6EC-06 2 207621671 207621671 C T MDH1B Missense_Mutation p.E122K 0.38 tolerated(0.31) benign(0.019) TCGA-D9-A6EC-06 2 209007464 209007464 C T CRYGB Silent p.G142G 0.43 TCGA-D9-A6EC-06 2 209353737 209353737 G A PTH2R Silent p.R359R 0.57 TCGA-D9-A6EC-06 2 211523352 211523352 G A CPS1 Silent p.K1238K 0.57 TCGA-D9-A6EC-06 2 211523353 211523353 G T CPS1 Missense_Mutation p.A1239S 0.58 tolerated(0.14) benign(0.407) TCGA-D9-A6EC-06 2 21224567 21224567 G A APOB 3'UTR 0.52 TCGA-D9-A6EC-06 2 212568915 212568915 G A ERBB4 Silent p.F401F 0.51 TCGA-D9-A6EC-06 2 213872807 213872807 C T IKZF2 Silent p.G286G 0.48 TCGA-D9-A6EC-06 2 213914566 213914566 A T IKZF2 Missense_Mutation p.F149I 0.32 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 2 213921669 213921669 C T IKZF2 Silent p.E98E 0.62 TCGA-D9-A6EC-06 2 215884434 215884434 C T ABCA12 Missense_Mutation p.M458I 0.27 tolerated(0.49) benign(0) TCGA-D9-A6EC-06 2 216240068 216240068 G A FN1 Missense_Mutation p.S2009F 0.22 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 216252967 216252967 T A FN1 Missense_Mutation p.E1437V 0.32 deleterious(0) possibly_damaging(0.568) TCGA-D9-A6EC-06 2 217124391 217124391 G A MARCH4 Missense_Mutation p.H293Y 0.57 deleterious(0.04) benign(0.189) TCGA-D9-A6EC-06 2 217234482 217234482 G A MARCH4 Nonsense_Mutation p.Q168* 0.52 TCGA-D9-A6EC-06 2 217724400 217724400 G A TNP1 Missense_Mutation p.S53F 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D9-A6EC-06 2 218999902 218999902 G A CXCR2 Silent p.K126K 0.77 TCGA-D9-A6EC-06 2 219029806 219029806 G A CXCR1 Silent p.I43I 0.31 TCGA-D9-A6EC-06 2 219294104 219294104 C T VIL1 Silent p.L222L 0.55 TCGA-D9-A6EC-06 2 219294572 219294572 G A VIL1 Missense_Mutation p.D284N 0.47 tolerated(0.07) possibly_damaging(0.706) TCGA-D9-A6EC-06 2 219449405 219449405 C T RQCD1 Missense_Mutation p.P131S 0.21 tolerated(0.14) benign(0.235) TCGA-D9-A6EC-06 2 219487520 219487520 C T PLCD4 Missense_Mutation p.L231F 0.35 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 2 219605244 219605244 G A TTLL4 Missense_Mutation p.G533E 0.53 tolerated(0.33) benign(0.038) TCGA-D9-A6EC-06 2 219605282 219605282 A G TTLL4 Missense_Mutation p.S546G 0.30 tolerated(0.14) benign(0) TCGA-D9-A6EC-06 2 220154944 220154944 G A PTPRN 3'UTR 0.34 TCGA-D9-A6EC-06 2 220396550 220396550 G A ASIC4 Missense_Mutation p.G345E 0.26 deleterious(0.03) possibly_damaging(0.886) TCGA-D9-A6EC-06 2 220396751 220396751 G A ASIC4 Silent p.R379R 0.59 TCGA-D9-A6EC-06 2 220422647 220422647 G A OBSL1 Missense_Mutation p.L1230F 0.14 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 2 220476518 220476518 C T STK11IP Missense_Mutation p.P777L 0.28 tolerated(0.74) benign(0.001) TCGA-D9-A6EC-06 2 222307682 222307682 C T EPHA4 Silent p.E647E 0.30 TCGA-D9-A6EC-06 2 225378270 225378270 A T CUL3 Missense_Mutation p.F209I 0.27 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 2 225661686 225661686 A C DOCK10 Missense_Mutation p.L1608V 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-D9-A6EC-06 2 226447409 226447409 C T NYAP2 Missense_Mutation p.P426S 0.36 tolerated(0.61) probably_damaging(0.999) TCGA-D9-A6EC-06 2 226491662 226491662 C T NYAP2 Missense_Mutation p.H550Y 0.45 tolerated(0.08) possibly_damaging(0.863) TCGA-D9-A6EC-06 2 227964390 227964390 G A COL4A4 Nonsense_Mutation p.R349* 0.67 TCGA-D9-A6EC-06 2 227979384 227979384 C T COL4A4 Missense_Mutation p.G173E 0.63 probably_damaging(0.999) TCGA-D9-A6EC-06 2 228167822 228167822 G A COL4A3 Silent p.V1317V 0.35 TCGA-D9-A6EC-06 2 228197266 228197266 G A MFF Missense_Mutation p.D131N 0.33 deleterious(0) probably_damaging(0.981) TCGA-D9-A6EC-06 2 228563556 228563556 A C SLC19A3 Missense_Mutation p.F292C 0.33 deleterious(0) probably_damaging(0.981) TCGA-D9-A6EC-06 2 228860250 228860250 G A SPHKAP Missense_Mutation p.L1537F 0.62 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 2 228882555 228882555 C T SPHKAP Silent p.R1005R 0.25 TCGA-D9-A6EC-06 2 228883060 228883060 C T SPHKAP Missense_Mutation p.G837E 0.28 tolerated(0.22) benign(0.029) TCGA-D9-A6EC-06 2 229890345 229890345 C T PID1 3'UTR 0.29 TCGA-D9-A6EC-06 2 230312172 230312172 C T DNER Missense_Mutation p.G449E 0.24 tolerated(0.54) benign(0.063) TCGA-D9-A6EC-06 2 231081634 231081634 G A SP110 Silent p.T3T 0.39 TCGA-D9-A6EC-06 2 231174723 231174723 G A SP140 Missense_Mutation p.D715N 0.32 tolerated(0.14) probably_damaging(0.982) TCGA-D9-A6EC-06 2 231380223 231380223 T G SP100 Intron 0.25 TCGA-D9-A6EC-06 2 232262816 232262816 A C B3GNT7 Missense_Mutation p.K129T 0.45 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 2 232262918 232262918 C T B3GNT7 Missense_Mutation p.S163F 0.24 tolerated(0.15) benign(0.195) TCGA-D9-A6EC-06 2 232389780 232389780 C T NMUR1 Missense_Mutation p.A419T 0.67 tolerated_low_confidence(0.27) benign(0.017) TCGA-D9-A6EC-06 2 233344823 233344823 C T ECEL1 3'UTR 0.32 TCGA-D9-A6EC-06 2 233350730 233350730 C T ECEL1 Missense_Mutation p.D212N 0.65 tolerated(1) probably_damaging(0.918) TCGA-D9-A6EC-06 2 233546297 233546297 C T EFHD1 Silent p.V196V 0.56 TCGA-D9-A6EC-06 2 233546298 233546298 C T EFHD1 Nonsense_Mutation p.Q197* 0.56 TCGA-D9-A6EC-06 2 233651924 233651924 A C GIGYF2 Silent p.S221S 0.10 TCGA-D9-A6EC-06 2 233671355 233671355 C T GIGYF2 Silent p.P619P 0.25 TCGA-D9-A6EC-06 2 233897535 233897535 A C NEU2 Missense_Mutation p.I52L 0.33 tolerated(1) benign(0.134) TCGA-D9-A6EC-06 2 234402154 234402154 G A USP40 Missense_Mutation p.P956L 0.61 tolerated(0.7) benign(0.005) TCGA-D9-A6EC-06 2 234527191 234527191 G A UGT1A8 Missense_Mutation p.G280R 0.62 tolerated(0.64) benign(0.098) TCGA-D9-A6EC-06 2 234545679 234545679 G A UGT1A10 Missense_Mutation p.G171R 0.18 deleterious(0.03) benign(0.363) TCGA-D9-A6EC-06 2 234622266 234622266 G A UGT1A5 Missense_Mutation p.R210K 0.66 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 2 234638020 234638020 C T UGT1A3 Missense_Mutation p.S83L 0.30 deleterious(0.02) benign(0.105) TCGA-D9-A6EC-06 2 234652123 234652123 A T UGT1A10 Intron 0.29 TCGA-D9-A6EC-06 2 234652376 234652376 C T UGT1A10 Intron 0.35 TCGA-D9-A6EC-06 2 234749922 234749922 C T HJURP Missense_Mutation p.E502K 0.27 tolerated(0.07) benign(0.112) TCGA-D9-A6EC-06 2 234851292 234851292 C T TRPM8 Missense_Mutation p.T200I 0.63 tolerated(0.13) probably_damaging(0.997) TCGA-D9-A6EC-06 2 235950539 235950539 C T SH3BP4 Missense_Mutation p.P376S 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 235950540 235950540 C T SH3BP4 Missense_Mutation p.P376L 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 235962357 235962357 A G SH3BP4 Missense_Mutation p.K930R 0.20 tolerated(0.26) benign(0.007) TCGA-D9-A6EC-06 2 238249693 238249693 G A COL6A3 Silent p.F2622F 0.63 TCGA-D9-A6EC-06 2 238259811 238259811 G A COL6A3 Missense_Mutation p.P2260S 0.64 unknown(0) TCGA-D9-A6EC-06 2 238270462 238270462 C T COL6A3 Missense_Mutation p.E2026K 0.22 probably_damaging(0.914) TCGA-D9-A6EC-06 2 238285527 238285527 G A COL6A3 Silent p.I986I 0.30 TCGA-D9-A6EC-06 2 238672405 238672405 C T LRRFIP1 Silent p.T683T 0.25 TCGA-D9-A6EC-06 2 239141113 239141113 G A AC016757.3 5'Flank 0.63 TCGA-D9-A6EC-06 2 240981428 240981428 G A PRR21 Silent p.A324A 0.49 TCGA-D9-A6EC-06 2 241534486 241534486 A C CAPN10 Missense_Mutation p.K348T 0.14 deleterious(0.03) benign(0.078) TCGA-D9-A6EC-06 2 241537805 241537805 C T CAPN10 Silent p.F660F 0.68 TCGA-D9-A6EC-06 2 241808596 241808596 G A AGXT Missense_Mutation p.E59K 0.20 deleterious(0) probably_damaging(0.929) TCGA-D9-A6EC-06 2 241808722 241808722 C T AGXT Silent p.L101L 0.67 TCGA-D9-A6EC-06 2 241831048 241831048 C T C2orf54 Missense_Mutation p.G216E 0.39 tolerated(0.07) benign(0.187) TCGA-D9-A6EC-06 2 242027813 242027813 T G SNED1 Silent p.S1413S 0.17 TCGA-D9-A6EC-06 2 242138764 242138764 T C ANO7 Missense_Mutation p.Y169H 0.28 deleterious(0.01) probably_damaging(0.927) TCGA-D9-A6EC-06 2 242149041 242149041 C T ANO7 Silent p.I504I 0.47 TCGA-D9-A6EC-06 2 242815280 242815280 G A CXXC11 Missense_Mutation p.E525K 0.88 deleterious(0.01) possibly_damaging(0.587) TCGA-D9-A6EC-06 2 24480778 24480778 C T ITSN2 Missense_Mutation p.G956E 0.57 tolerated(0.08) unknown(0) TCGA-D9-A6EC-06 2 24498660 24498660 T C ITSN2 Missense_Mutation p.K668R 0.59 tolerated(0.07) unknown(0) TCGA-D9-A6EC-06 2 24521638 24521638 T C ITSN2 Missense_Mutation p.R464G 0.27 deleterious(0.01) unknown(0) TCGA-D9-A6EC-06 2 24533469 24533469 G A ITSN2 Missense_Mutation p.L149F 0.23 deleterious(0.03) probably_damaging(0.93) TCGA-D9-A6EC-06 2 26508325 26508325 C T HADHB Silent p.S425S 0.55 TCGA-D9-A6EC-06 2 26688825 26688825 G A OTOF Silent p.V1540V 0.26 TCGA-D9-A6EC-06 2 26699865 26699865 T G OTOF Missense_Mutation p.N857T 0.23 deleterious(0.04) benign(0.038) TCGA-D9-A6EC-06 2 26739334 26739334 G A OTOF Missense_Mutation p.P154L 0.54 tolerated(0.09) benign(0.193) TCGA-D9-A6EC-06 2 27150130 27150130 G A DPYSL5 Missense_Mutation p.E144K 0.36 deleterious(0) benign(0.357) TCGA-D9-A6EC-06 2 27151171 27151171 G A DPYSL5 Missense_Mutation p.E217K 0.31 tolerated(0.81) probably_damaging(0.997) TCGA-D9-A6EC-06 2 27162912 27162912 A T DPYSL5 Missense_Mutation p.I321F 0.59 deleterious(0) benign(0.149) TCGA-D9-A6EC-06 2 27305022 27305022 C T EMILIN1 Silent p.L195L 0.32 TCGA-D9-A6EC-06 2 27360753 27360753 G A C2orf53 Missense_Mutation p.P149S 0.76 tolerated(0.67) benign(0.033) TCGA-D9-A6EC-06 2 27448014 27448014 C T CAD Missense_Mutation p.T508I 0.23 deleterious(0) benign(0.176) TCGA-D9-A6EC-06 2 27480192 27480192 G A SLC30A3 Missense_Mutation p.P203S 0.64 tolerated(0.9) benign(0.007) TCGA-D9-A6EC-06 2 27503095 27503095 G T DNAJC5G 3'UTR 0.28 TCGA-D9-A6EC-06 2 27535108 27535108 G A MPV17 Missense_Mutation p.P128S 0.35 tolerated(0.48) benign(0.006) TCGA-D9-A6EC-06 2 27552058 27552058 A C GTF3C2 Missense_Mutation p.L657V 0.32 deleterious(0.01) benign(0.197) TCGA-D9-A6EC-06 2 27560379 27560379 A C GTF3C2 Missense_Mutation p.L333V 0.07 tolerated(0.38) benign(0.006) TCGA-D9-A6EC-06 2 27598827 27598827 A G SNX17 Missense_Mutation p.T365A 0.08 tolerated(0.56) benign(0.011) TCGA-D9-A6EC-06 2 27720146 27720146 G A GCKR Silent p.E32E 0.60 TCGA-D9-A6EC-06 2 27746356 27746356 C T GCKR 3'UTR 0.33 TCGA-D9-A6EC-06 2 27800331 27800331 A G C2orf16 Missense_Mutation p.T298A 0.26 tolerated(0.17) benign(0.002) TCGA-D9-A6EC-06 2 27800829 27800829 A T C2orf16 Missense_Mutation p.T464S 0.30 tolerated(0.26) possibly_damaging(0.57) TCGA-D9-A6EC-06 2 27805257 27805257 G A C2orf16 Missense_Mutation p.G1940R 0.70 tolerated_low_confidence(0.95) unknown(0) TCGA-D9-A6EC-06 2 28531146 28531146 C T BRE Intron 0.37 TCGA-D9-A6EC-06 2 28796089 28796089 C T PLB1 Silent p.S450S 0.25 TCGA-D9-A6EC-06 2 28796141 28796141 T G PLB1 Missense_Mutation p.L468V 0.15 deleterious(0.04) probably_damaging(0.938) TCGA-D9-A6EC-06 2 28802570 28802570 A C PLB1 Missense_Mutation p.D521A 0.17 deleterious(0) possibly_damaging(0.669) TCGA-D9-A6EC-06 2 28828719 28828719 G A PLB1 Splice_Site p.X988_splice 0.61 TCGA-D9-A6EC-06 2 28843482 28843482 G A PLB1 Silent p.G1133G 0.60 TCGA-D9-A6EC-06 2 29451857 29451857 C T ALK Missense_Mutation p.G903E 0.14 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 29606708 29606708 C T ALK Missense_Mutation p.G391E 0.31 tolerated(0.27) benign(0.084) TCGA-D9-A6EC-06 2 31588974 31588974 C T XDH Missense_Mutation p.S775N 0.26 tolerated(0.11) benign(0.008) TCGA-D9-A6EC-06 2 31754399 31754399 G A AL133247.2 Intron 0.25 TCGA-D9-A6EC-06 2 32409397 32409397 T C SLC30A6 Missense_Mutation p.Y132H 0.14 tolerated(0.09) benign(0.099) TCGA-D9-A6EC-06 2 32712786 32712786 T G BIRC6 Missense_Mutation p.L2629R 0.10 benign(0.259) TCGA-D9-A6EC-06 2 32738123 32738123 T A BIRC6 Silent p.S3490S 0.30 TCGA-D9-A6EC-06 2 32768572 32768572 C T BIRC6 Nonsense_Mutation p.R4186* 0.20 TCGA-D9-A6EC-06 2 33764265 33764265 G A RASGRP3 Silent p.R422R 0.42 TCGA-D9-A6EC-06 2 37028483 37028483 G A VIT Silent p.T366T 0.61 TCGA-D9-A6EC-06 2 37265141 37265141 G A HEATR5B Missense_Mutation p.R1025C 0.18 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 37295899 37295899 A C HEATR5B Missense_Mutation p.L368V 0.11 tolerated(0.06) possibly_damaging(0.666) TCGA-D9-A6EC-06 2 37430004 37430004 C T CEBPZ Missense_Mutation p.G983D 0.55 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 37430005 37430005 C T CEBPZ Missense_Mutation p.G983S 0.53 tolerated(0.05) probably_damaging(0.984) TCGA-D9-A6EC-06 2 37455199 37455199 T C CEBPZ Silent p.E379E 0.24 TCGA-D9-A6EC-06 2 38177637 38177637 C T RMDN2 5'UTR 0.69 TCGA-D9-A6EC-06 2 38178480 38178480 C T RMDN2 Missense_Mutation p.S41F 0.60 tolerated_low_confidence(0.31) benign(0.366) TCGA-D9-A6EC-06 2 38179241 38179241 C T RMDN2 Missense_Mutation p.P295S 0.44 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-D9-A6EC-06 2 38301646 38301646 A C CYP1B1 Missense_Mutation p.F296V 0.33 tolerated(0.08) probably_damaging(0.946) TCGA-D9-A6EC-06 2 39050155 39050155 A C DHX57 Missense_Mutation p.L1091V 0.28 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 2 40342678 40342678 G A SLC8A1 Silent p.F879F 0.19 TCGA-D9-A6EC-06 2 40387940 40387940 C T SLC8A1 Missense_Mutation p.R745K 0.55 tolerated(0.31) benign(0.443) TCGA-D9-A6EC-06 2 40656013 40656013 C T SLC8A1 Missense_Mutation p.D470N 0.61 deleterious(0) benign(0.054) TCGA-D9-A6EC-06 2 42472774 42472774 T C EML4 Missense_Mutation p.L52P 0.30 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 2 43804333 43804333 A G THADA Missense_Mutation p.W289R 0.31 deleterious(0) possibly_damaging(0.701) TCGA-D9-A6EC-06 2 43924322 43924322 A G PLEKHH2 Missense_Mutation p.K172R 0.23 tolerated(0.19) benign(0.023) TCGA-D9-A6EC-06 2 44099258 44099258 G A ABCG8 Missense_Mutation p.E370K 0.27 tolerated(0.92) benign(0.048) TCGA-D9-A6EC-06 2 44531212 44531212 A C SLC3A1 Intron 0.33 TCGA-D9-A6EC-06 2 46313394 46313394 G A PRKCE Missense_Mutation p.M495I 0.23 deleterious(0) probably_damaging(0.973) TCGA-D9-A6EC-06 2 46313395 46313395 T A PRKCE Missense_Mutation p.F496I 0.24 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 46739707 46739707 G A ATP6V1E2 Silent p.T48T 0.22 TCGA-D9-A6EC-06 2 46987292 46987292 C T SOCS5 3'UTR 0.57 TCGA-D9-A6EC-06 2 46987293 46987293 C T SOCS5 3'UTR 0.55 TCGA-D9-A6EC-06 2 47220595 47220595 C T TTC7A Silent p.I257I 0.62 TCGA-D9-A6EC-06 2 48040456 48040456 T G FBXO11 Missense_Mutation p.K715T 0.26 tolerated(0.1) probably_damaging(0.993) TCGA-D9-A6EC-06 2 48066045 48066045 A G FBXO11 Silent p.A180A 0.35 TCGA-D9-A6EC-06 2 48809550 48809550 T C STON1-GTF2A1L Missense_Mutation p.L593P 0.10 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 48906513 48906513 G A STON1-GTF2A1L Missense_Mutation p.D1161N 0.58 deleterious(0.01) probably_damaging(0.942) TCGA-D9-A6EC-06 2 50724531 50724531 C T NRXN1 Missense_Mutation p.G980E 0.26 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 50779950 50779950 C T NRXN1 Missense_Mutation p.E552K 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-D9-A6EC-06 2 54858180 54858180 C T SPTBN1 Missense_Mutation p.T999I 0.35 deleterious(0.03) possibly_damaging(0.574) TCGA-D9-A6EC-06 2 55602016 55602016 T A CCDC88A Missense_Mutation p.T93S 0.10 tolerated(0.46) benign(0.005) TCGA-D9-A6EC-06 2 56419695 56419695 G A CCDC85A Silent p.K120K 0.23 TCGA-D9-A6EC-06 2 61149580 61149580 T C REL Silent p.G590G 0.24 TCGA-D9-A6EC-06 2 61415349 61415349 A C USP34 Missense_Mutation p.L3510R 0.20 deleterious_low_confidence(0.01) benign(0.11) TCGA-D9-A6EC-06 2 63272622 63272622 G T EHBP1 Missense_Mutation p.C1228F 0.44 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 2 63821675 63821675 A G MDH1 Silent p.S37S 0.31 TCGA-D9-A6EC-06 2 63831840 63831840 A C MDH1 Missense_Mutation p.K188T 0.17 deleterious(0.01) possibly_damaging(0.464) TCGA-D9-A6EC-06 2 64189496 64189496 T C VPS54 Missense_Mutation p.T236A 0.20 tolerated(0.38) benign(0.088) TCGA-D9-A6EC-06 2 68384793 68384793 C T WDR92 5'Flank 0.53 TCGA-D9-A6EC-06 2 68622908 68622908 G A PLEK Nonsense_Mutation p.W338* 0.57 TCGA-D9-A6EC-06 2 69046357 69046357 A C ARHGAP25 Missense_Mutation p.N369T 0.12 tolerated(0.16) benign(0.037) TCGA-D9-A6EC-06 2 69092706 69092706 A C BMP10 3'UTR 0.20 TCGA-D9-A6EC-06 2 69093236 69093236 C T BMP10 Missense_Mutation p.E268K 0.25 tolerated(0.73) benign(0.009) TCGA-D9-A6EC-06 2 70392685 70392685 T G C2orf42 Missense_Mutation p.K409N 0.10 deleterious(0) possibly_damaging(0.463) TCGA-D9-A6EC-06 2 70504295 70504295 A C PCYOX1 Missense_Mutation p.K430T 0.11 tolerated(0.6) benign(0.013) TCGA-D9-A6EC-06 2 70933408 70933408 A G ADD2 Missense_Mutation p.F45L 0.08 deleterious(0.02) possibly_damaging(0.504) TCGA-D9-A6EC-06 2 7137194 7137194 T G RNF144A Splice_Site p.X45_splice 0.22 TCGA-D9-A6EC-06 2 7179829 7179829 C T RNF144A Missense_Mutation p.P273S 0.36 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 2 71839875 71839875 C T DYSF Silent p.S1442S 0.25 TCGA-D9-A6EC-06 2 73115659 73115659 A C SPR Missense_Mutation p.K174T 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 73675712 73675712 T C ALMS1 Silent p.G685G 0.32 TCGA-D9-A6EC-06 2 74328504 74328504 T A TET3 Missense_Mutation p.L1395Q 0.27 tolerated(0.16) probably_damaging(0.946) TCGA-D9-A6EC-06 2 74458389 74458389 A G SLC4A5 Missense_Mutation p.S941P 0.08 deleterious(0) probably_damaging(0.976) TCGA-D9-A6EC-06 2 74659762 74659762 T G RTKN Missense_Mutation p.E48A 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-D9-A6EC-06 2 74699807 74699807 G A MRPL53 5'UTR 0.31 TCGA-D9-A6EC-06 2 74761740 74761740 A G LOXL3 Missense_Mutation p.S581P 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A6EC-06 2 74867171 74867171 G A M1AP Missense_Mutation p.P78S 0.58 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 2 79254932 79254932 G A REG3G Splice_Site p.X112_splice 0.32 TCGA-D9-A6EC-06 2 80874814 80874814 C T CTNNA2 Silent p.V845V 0.29 TCGA-D9-A6EC-06 2 86968106 86968106 A G RMND5A Missense_Mutation p.R67G 0.23 deleterious(0) benign(0.06) TCGA-D9-A6EC-06 2 88888279 88888279 G A EIF2AK3 Missense_Mutation p.H436Y 0.20 deleterious(0.01) benign(0.433) TCGA-D9-A6EC-06 2 89309671 89309671 A C IGKV1-9 Missense_Mutation p.S53R 0.26 tolerated_low_confidence(0.06) benign(0.013) TCGA-D9-A6EC-06 2 89309943 89309943 C T IGKV1-9 Silent p.R4R 0.12 TCGA-D9-A6EC-06 2 89512980 89512980 G A IGKV1-27 Silent p.F93F 0.65 TCGA-D9-A6EC-06 2 8952616 8952616 A C KIDINS220 Missense_Mutation p.V138G 0.36 deleterious(0) probably_damaging(0.934) TCGA-D9-A6EC-06 2 90154133 90154133 A T IGKV3D-15 Missense_Mutation p.R74W 0.06 deleterious(0.03) probably_damaging(0.991) TCGA-D9-A6EC-06 2 90229468 90229468 C T IGKV1D-42 Silent p.T96T 0.20 TCGA-D9-A6EC-06 2 9546967 9546967 G A ITGB1BP1 Missense_Mutation p.P200L 0.21 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-D9-A6EC-06 2 9547591 9547591 T A ITGB1BP1 Missense_Mutation p.Q173L 0.36 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 2 95480868 95480868 C T ANKRD20A8P RNA 0.23 TCGA-D9-A6EC-06 2 95753230 95753230 C A MRPS5 Missense_Mutation p.G389W 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-D9-A6EC-06 2 95783666 95783666 G A MRPS5 Missense_Mutation p.S28F 0.76 tolerated_low_confidence(0.7) benign(0.002) TCGA-D9-A6EC-06 2 95951398 95951398 C T PROM2 Silent p.P629P 0.64 TCGA-D9-A6EC-06 2 96690318 96690318 A G GPAT2 Missense_Mutation p.L509P 0.23 deleterious(0) possibly_damaging(0.883) TCGA-D9-A6EC-06 2 96795587 96795587 T G ASTL Missense_Mutation p.S284R 0.27 deleterious(0) possibly_damaging(0.653) TCGA-D9-A6EC-06 2 96959084 96959084 G A SNRNP200 Missense_Mutation p.P669L 0.32 tolerated(0.21) benign(0.039) TCGA-D9-A6EC-06 2 96963390 96963390 G A SNRNP200 Silent p.L396L 0.26 TCGA-D9-A6EC-06 2 97164169 97164169 C T NEURL3 RNA 0.17 TCGA-D9-A6EC-06 2 98274904 98274904 G A ACTR1B Missense_Mutation p.R215W 0.34 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 2 98928900 98928900 C T VWA3B 3'UTR 0.20 TCGA-D9-A6EC-06 2 99811724 99811724 C T MRPL30 3'UTR 0.27 TCGA-D9-A6EC-06 3 100617735 100617735 T G ABI3BP Missense_Mutation p.K118T 0.22 deleterious(0) benign(0.403) TCGA-D9-A6EC-06 3 101086844 101086844 C T SENP7 Missense_Mutation p.G270R 0.50 tolerated(0.2) possibly_damaging(0.704) TCGA-D9-A6EC-06 3 10188298 10188298 T C VHL Silent p.I147I 0.30 TCGA-D9-A6EC-06 3 102195877 102195877 C T ZPLD1 Missense_Mutation p.S371L 0.98 tolerated(0.06) possibly_damaging(0.7) TCGA-D9-A6EC-06 3 10362796 10362796 C T SEC13 5'UTR 0.28 TCGA-D9-A6EC-06 3 105421145 105421145 T C CBLB Silent p.R584R 0.30 TCGA-D9-A6EC-06 3 108363184 108363184 C T DZIP3 Missense_Mutation p.L439F 0.86 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-D9-A6EC-06 3 108703566 108703566 T A MORC1 Missense_Mutation p.K774I 0.69 deleterious(0) possibly_damaging(0.451) TCGA-D9-A6EC-06 3 109031484 109031484 G A DPPA2 Missense_Mutation p.P30L 0.88 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 3 111693353 111693353 G A PHLDB2 Silent p.R1235R 0.90 TCGA-D9-A6EC-06 3 111958783 111958783 G A SLC9C1 Silent p.T450T 0.92 TCGA-D9-A6EC-06 3 112066525 112066525 A C CD200 Missense_Mutation p.N206T 0.13 tolerated(0.06) probably_damaging(0.977) TCGA-D9-A6EC-06 3 112300064 112300064 T A SLC35A5 Missense_Mutation p.L367H 0.55 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 3 112357418 112357418 G A CCDC80 Silent p.A445A 0.88 TCGA-D9-A6EC-06 3 113302285 113302285 C T SIDT1 Silent p.F259F 0.89 TCGA-D9-A6EC-06 3 119631642 119631642 G A GSK3B Silent p.V208V 0.97 TCGA-D9-A6EC-06 3 119886481 119886481 A G GPR156 Missense_Mutation p.S615P 0.06 deleterious(0.01) probably_damaging(0.921) TCGA-D9-A6EC-06 3 120408555 120408555 G A RABL3 3'UTR 1.00 TCGA-D9-A6EC-06 3 120408613 120408613 A C RABL3 3'UTR 0.18 TCGA-D9-A6EC-06 3 121240856 121240856 G A POLQ Missense_Mutation p.H417Y 1.00 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 3 121340586 121340586 A C FBXO40 Missense_Mutation p.N104H 0.98 deleterious(0.03) possibly_damaging(0.831) TCGA-D9-A6EC-06 3 121341139 121341139 C T FBXO40 Missense_Mutation p.A288V 0.98 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 3 121341140 121341140 C T FBXO40 Silent p.A288A 0.99 TCGA-D9-A6EC-06 3 121350811 121350811 G A HCLS1 Missense_Mutation p.S448F 0.95 deleterious(0) possibly_damaging(0.788) TCGA-D9-A6EC-06 3 121591617 121591617 C T EAF2 Missense_Mutation p.L240F 0.53 tolerated(0.72) benign(0.025) TCGA-D9-A6EC-06 3 121641082 121641082 G A SLC15A2 Missense_Mutation p.G238E 0.97 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 3 121720640 121720640 C T ILDR1 Missense_Mutation p.G151R 0.60 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 3 121822656 121822656 T G CD86 Missense_Mutation p.I121S 0.13 deleterious(0) possibly_damaging(0.665) TCGA-D9-A6EC-06 3 121994779 121994779 G A CASR Missense_Mutation p.D500N 0.96 tolerated(0.09) possibly_damaging(0.831) TCGA-D9-A6EC-06 3 122002976 122002976 C T CASR Silent p.F735F 0.96 TCGA-D9-A6EC-06 3 122271449 122271449 A C PARP9 Missense_Mutation p.I343S 0.47 tolerated(0.34) benign(0.006) TCGA-D9-A6EC-06 3 122459683 122459683 T G HSPBAP1 Missense_Mutation p.N326H 0.43 deleterious(0) probably_damaging(0.95) TCGA-D9-A6EC-06 3 122642526 122642526 G A SEMA5B Missense_Mutation p.R458C 0.97 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 3 122849383 122849383 C T PDIA5 Missense_Mutation p.S277F 0.18 tolerated(0.07) benign(0.02) TCGA-D9-A6EC-06 3 122942419 122942419 C T SEC22A Silent p.L66L 0.34 TCGA-D9-A6EC-06 3 123005611 123005611 T C ADCY5 Missense_Mutation p.K1193R 0.15 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 3 123014945 123014945 G A ADCY5 Missense_Mutation p.L1017F 0.20 deleterious(0) possibly_damaging(0.852) TCGA-D9-A6EC-06 3 123044256 123044256 G A ADCY5 Silent p.I667I 0.20 TCGA-D9-A6EC-06 3 124207093 124207093 G A KALRN Missense_Mutation p.D1441N 0.47 deleterious(0) benign(0.097) TCGA-D9-A6EC-06 3 124211649 124211649 G A KALRN Silent p.R1582R 0.20 TCGA-D9-A6EC-06 3 12421229 12421229 C T PPARG Missense_Mutation p.P37S 0.60 tolerated_low_confidence(0.13) benign(0.388) TCGA-D9-A6EC-06 3 124397059 124397059 C T KALRN Silent p.L709L 0.95 TCGA-D9-A6EC-06 3 124438107 124438107 G A RP11-71H17.7 5'Flank 0.96 TCGA-D9-A6EC-06 3 124449234 124449234 G A UMPS 5'UTR 0.94 TCGA-D9-A6EC-06 3 124453989 124453989 A T UMPS Missense_Mutation p.D69V 0.12 deleterious(0.02) benign(0.213) TCGA-D9-A6EC-06 3 124560393 124560393 T G ITGB5 Missense_Mutation p.K206T 0.18 tolerated(0.18) probably_damaging(1) TCGA-D9-A6EC-06 3 125298758 125298758 A T OSBPL11 Silent p.S120S 0.13 TCGA-D9-A6EC-06 3 125650488 125650488 A C ALG1L Missense_Mutation p.F90V 0.20 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 3 12641906 12641906 A C RAF1 Missense_Mutation p.I281M 0.09 tolerated(0.29) benign(0.008) TCGA-D9-A6EC-06 3 126916183 126916183 C T C3orf56 Nonsense_Mutation p.Q219* 0.20 TCGA-D9-A6EC-06 3 128810152 128810152 G A RAB43 Silent p.S142S 0.24 TCGA-D9-A6EC-06 3 128810153 128810153 G A RAB43 Missense_Mutation p.S142F 0.27 deleterious(0.05) benign(0.342) TCGA-D9-A6EC-06 3 128986804 128986804 A C COPG1 Missense_Mutation p.E523D 0.10 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 129252676 129252676 G A RHO 3'UTR 0.94 TCGA-D9-A6EC-06 3 12950798 12950798 T C IQSEC1 Silent p.Q865Q 0.09 TCGA-D9-A6EC-06 3 130282220 130282220 G A COL6A6 Missense_Mutation p.G125R 0.92 tolerated(0.06) possibly_damaging(0.862) TCGA-D9-A6EC-06 3 130282221 130282221 G A COL6A6 Missense_Mutation p.G125E 0.94 deleterious(0.04) possibly_damaging(0.745) TCGA-D9-A6EC-06 3 130286023 130286023 A G COL6A6 Missense_Mutation p.E587G 0.19 deleterious(0) possibly_damaging(0.542) TCGA-D9-A6EC-06 3 130286954 130286954 A G COL6A6 Missense_Mutation p.E636G 0.17 deleterious(0.01) possibly_damaging(0.886) TCGA-D9-A6EC-06 3 130312089 130312089 G A COL6A6 Missense_Mutation p.G1488E 0.97 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 130653540 130653540 C T ATP2C1 Silent p.A137A 0.95 TCGA-D9-A6EC-06 3 133167421 133167421 A G BFSP2 Missense_Mutation p.M221V 0.12 tolerated(0.35) benign(0.005) TCGA-D9-A6EC-06 3 13418972 13418972 T G NUP210 Missense_Mutation p.K379T 0.07 deleterious(0) possibly_damaging(0.623) TCGA-D9-A6EC-06 3 134197400 134197400 A G ANAPC13 3'UTR 0.09 TCGA-D9-A6EC-06 3 134323029 134323029 G A KY Nonsense_Mutation p.Q460* 0.15 TCGA-D9-A6EC-06 3 134323106 134323106 T C KY Missense_Mutation p.K434R 0.21 tolerated(0.19) benign(0.002) TCGA-D9-A6EC-06 3 134898785 134898785 G A EPHB1 Missense_Mutation p.D615N 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-D9-A6EC-06 3 135720807 135720807 T G PPP2R3A Missense_Mutation p.V156G 0.19 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-D9-A6EC-06 3 136078051 136078051 A C STAG1 Missense_Mutation p.F959V 0.14 deleterious(0) probably_damaging(0.96) TCGA-D9-A6EC-06 3 137484287 137484287 T C SOX14 Missense_Mutation p.F221L 0.19 tolerated(1) benign(0.017) TCGA-D9-A6EC-06 3 138762957 138762957 T G PRR23C Missense_Mutation p.D169A 0.38 tolerated(0.07) possibly_damaging(0.889) TCGA-D9-A6EC-06 3 139181011 139181011 G A RBP2 Silent p.F65F 0.96 TCGA-D9-A6EC-06 3 139297789 139297789 T C NMNAT3 Missense_Mutation p.Q36R 0.20 tolerated(0.1) benign(0.051) TCGA-D9-A6EC-06 3 13978944 13978944 G A FGD5P1 3'Flank 0.29 TCGA-D9-A6EC-06 3 141497384 141497384 C T GRK7 Silent p.F86F 0.97 TCGA-D9-A6EC-06 3 141923587 141923587 A G GK5 Silent p.L121L 0.12 TCGA-D9-A6EC-06 3 143292996 143292996 C T SLC9A9 Missense_Mutation p.E312K 0.14 deleterious(0) possibly_damaging(0.869) TCGA-D9-A6EC-06 3 143704485 143704485 T G C3orf58 Missense_Mutation p.F253C 0.21 deleterious(0.01) possibly_damaging(0.634) TCGA-D9-A6EC-06 3 14552685 14552685 C T GRIP2 RNA 0.41 TCGA-D9-A6EC-06 3 146177735 146177735 A C PLSCR2 Missense_Mutation p.I59S 0.10 tolerated(0.38) benign(0.018) TCGA-D9-A6EC-06 3 14724216 14724216 C T C3orf20 5'UTR 0.30 TCGA-D9-A6EC-06 3 14745915 14745915 A C C3orf20 Missense_Mutation p.K317T 0.30 deleterious(0.01) probably_damaging(0.957) TCGA-D9-A6EC-06 3 14769981 14769981 G A C3orf20 Missense_Mutation p.E576K 0.23 tolerated(0.18) possibly_damaging(0.828) TCGA-D9-A6EC-06 3 149589826 149589826 T A RNF13 Missense_Mutation p.I69N 0.12 deleterious(0) possibly_damaging(0.541) TCGA-D9-A6EC-06 3 150661700 150661700 C T CLRN1 Intron 1.00 TCGA-D9-A6EC-06 3 150906239 150906239 G A MED12L Silent p.R575R 0.94 TCGA-D9-A6EC-06 3 151155454 151155454 C T IGSF10 Missense_Mutation p.E2299K 0.93 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 151155798 151155798 G A IGSF10 Missense_Mutation p.S2184F 0.98 deleterious(0) probably_damaging(0.968) TCGA-D9-A6EC-06 3 151176498 151176498 C T IGSF10 5'Flank 0.23 TCGA-D9-A6EC-06 3 151463383 151463383 T C AADACL2 Missense_Mutation p.L173P 0.96 deleterious(0.01) possibly_damaging(0.682) TCGA-D9-A6EC-06 3 15270559 15270559 A C CAPN7 Missense_Mutation p.I311L 0.11 tolerated(0.11) benign(0.364) TCGA-D9-A6EC-06 3 15298266 15298266 G A SH3BP5 Intron 0.62 TCGA-D9-A6EC-06 3 153958188 153958188 C T ARHGEF26 Missense_Mutation p.S707F 0.15 deleterious(0) possibly_damaging(0.555) TCGA-D9-A6EC-06 3 154138960 154138960 T G GPR149 Silent p.G497G 0.05 TCGA-D9-A6EC-06 3 154866399 154866399 A C MME Missense_Mutation p.S520R 0.10 tolerated(0.22) benign(0) TCGA-D9-A6EC-06 3 155200519 155200519 A - PLCH1 Frame_Shift_Del p.I1107Tfs*27 0.07 TCGA-D9-A6EC-06 3 155838675 155838675 G A KCNAB1 Missense_Mutation p.R92K 0.22 tolerated(0.1) possibly_damaging(0.862) TCGA-D9-A6EC-06 3 156009909 156009909 G A KCNAB1 Intron 0.95 TCGA-D9-A6EC-06 3 156745894 156745894 A T LEKR1 Silent p.I457I 0.08 TCGA-D9-A6EC-06 3 156746015 156746015 G A LEKR1 Missense_Mutation p.E498K 0.98 tolerated(0.08) possibly_damaging(0.486) TCGA-D9-A6EC-06 3 156746016 156746016 A C LEKR1 Missense_Mutation p.E498A 1.00 deleterious(0.03) possibly_damaging(0.486) TCGA-D9-A6EC-06 3 156866309 156866309 A C CCNL1 Missense_Mutation p.S434R 0.07 deleterious(0.04) probably_damaging(0.944) TCGA-D9-A6EC-06 3 157816030 157816030 T C SHOX2 Missense_Mutation p.H285R 0.11 tolerated(0.06) possibly_damaging(0.511) TCGA-D9-A6EC-06 3 159986273 159986273 A C IFT80 Silent p.A717A 0.08 TCGA-D9-A6EC-06 3 160122251 160122251 C T SMC4 Missense_Mutation p.H216Y 0.97 tolerated(0.13) benign(0.179) TCGA-D9-A6EC-06 3 161064090 161064090 C T SPTSSB Missense_Mutation p.E8K 0.94 tolerated(0.74) benign(0.287) TCGA-D9-A6EC-06 3 161214755 161214755 G A OTOL1 Missense_Mutation p.E54K 0.98 tolerated(0.21) unknown(0) TCGA-D9-A6EC-06 3 16250027 16250027 C T GALNT15 Missense_Mutation p.P310L 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 164727139 164727139 G A SI Silent p.S1369S 0.72 TCGA-D9-A6EC-06 3 164733000 164733000 C T SI Missense_Mutation p.E1304K 0.30 deleterious(0.02) probably_damaging(0.985) TCGA-D9-A6EC-06 3 164739096 164739096 C T SI Missense_Mutation p.E1059K 0.67 tolerated(0.07) possibly_damaging(0.674) TCGA-D9-A6EC-06 3 164750357 164750357 G A SI Nonsense_Mutation p.Q897* 0.26 TCGA-D9-A6EC-06 3 164755792 164755792 C T SI Silent p.R774R 0.21 TCGA-D9-A6EC-06 3 164760925 164760925 T G SI Silent p.T642T 0.11 TCGA-D9-A6EC-06 3 167184985 167184985 G A SERPINI2 Silent p.Y112Y 0.35 TCGA-D9-A6EC-06 3 167189454 167189454 C T SERPINI2 Missense_Mutation p.E57K 0.09 deleterious(0) benign(0.124) TCGA-D9-A6EC-06 3 167293710 167293710 T C WDR49 Missense_Mutation p.K161R 0.06 tolerated(0.12) benign(0.025) TCGA-D9-A6EC-06 3 167508321 167508321 C T SERPINI1 Missense_Mutation p.H138Y 0.64 tolerated(0.74) benign(0.183) TCGA-D9-A6EC-06 3 168833417 168833417 C T MECOM Missense_Mutation p.R625Q 0.67 tolerated(0.14) benign(0.045) TCGA-D9-A6EC-06 3 168834004 168834004 C T MECOM Silent p.G429G 0.23 TCGA-D9-A6EC-06 3 168864307 168864307 C T MECOM 5'Flank 0.13 TCGA-D9-A6EC-06 3 169540426 169540426 C T LRRIQ4 Silent p.L239L 0.23 TCGA-D9-A6EC-06 3 169550835 169550835 C T LRRIQ4 Missense_Mutation p.S465F 0.31 tolerated(0.12) benign(0.019) TCGA-D9-A6EC-06 3 169639027 169639027 C T SAMD7 Missense_Mutation p.P38S 0.08 tolerated(0.34) benign(0.071) TCGA-D9-A6EC-06 3 169866895 169866895 T G PHC3 Missense_Mutation p.Q184H 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-D9-A6EC-06 3 170198641 170198641 G A SLC7A14 Missense_Mutation p.A477V 0.31 tolerated(0.3) benign(0.001) TCGA-D9-A6EC-06 3 17052228 17052228 A G PLCL2 Missense_Mutation p.K338E 0.10 deleterious(0.04) possibly_damaging(0.792) TCGA-D9-A6EC-06 3 17052594 17052594 G A PLCL2 Missense_Mutation p.E460K 0.67 deleterious(0) probably_damaging(0.932) TCGA-D9-A6EC-06 3 170715646 170715646 G A SLC2A2 3'UTR 0.26 TCGA-D9-A6EC-06 3 170797441 170797441 C T TNIK Missense_Mutation p.G1105E 0.66 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 170825899 170825899 C T TNIK Silent p.V779V 0.57 TCGA-D9-A6EC-06 3 171320939 171320939 A C PLD1 Missense_Mutation p.L1052V 0.11 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 3 172052739 172052739 T A FNDC3B Silent p.T549T 0.10 TCGA-D9-A6EC-06 3 172224493 172224493 T G TNFSF10 Missense_Mutation p.K212T 0.06 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 175189449 175189449 A C NAALADL2 Missense_Mutation p.K519T 0.20 tolerated(0.08) benign(0.312) TCGA-D9-A6EC-06 3 17550096 17550096 A G TBC1D5 Intron 0.23 TCGA-D9-A6EC-06 3 178543499 178543499 G A KCNMB2 Missense_Mutation p.M60I 0.65 deleterious(0.01) probably_damaging(0.968) TCGA-D9-A6EC-06 3 179334802 179334802 C T NDUFB5 Silent p.G104G 0.26 TCGA-D9-A6EC-06 3 182853511 182853511 C T LAMP3 Missense_Mutation p.G371R 0.13 deleterious(0) possibly_damaging(0.866) TCGA-D9-A6EC-06 3 182853560 182853560 T G LAMP3 Missense_Mutation p.K354N 0.17 tolerated(0.08) benign(0.208) TCGA-D9-A6EC-06 3 182870235 182870235 C T LAMP3 Silent p.G272G 0.11 TCGA-D9-A6EC-06 3 182871475 182871475 C T LAMP3 Missense_Mutation p.E252K 0.25 tolerated(0.4) benign(0.015) TCGA-D9-A6EC-06 3 182872015 182872015 G A LAMP3 Missense_Mutation p.H72Y 0.69 tolerated(0.22) benign(0.01) TCGA-D9-A6EC-06 3 183226035 183226035 T C KLHL6 Missense_Mutation p.S241G 0.15 tolerated(0.13) benign(0.002) TCGA-D9-A6EC-06 3 183521773 183521773 A C YEATS2 Splice_Site p.X1195_splice 0.08 TCGA-D9-A6EC-06 3 183655807 183655807 A C ABCC5 Missense_Mutation p.L1246V 0.13 tolerated(1) benign(0.14) TCGA-D9-A6EC-06 3 183888439 183888439 C T DVL3 Missense_Mutation p.P683S 0.09 tolerated(0.11) possibly_damaging(0.876) TCGA-D9-A6EC-06 3 183888440 183888440 C T DVL3 Missense_Mutation p.P683L 0.09 deleterious(0.02) probably_damaging(0.913) TCGA-D9-A6EC-06 3 183911237 183911237 C T ABCF3 Silent p.F656F 0.12 TCGA-D9-A6EC-06 3 183961734 183961734 G A ALG3 Silent p.S259S 0.63 TCGA-D9-A6EC-06 3 184025197 184025197 T G PSMD2 Missense_Mutation p.L696R 0.11 deleterious(0) probably_damaging(0.973) TCGA-D9-A6EC-06 3 184035236 184035236 C T EIF4G1 Missense_Mutation p.S99F 0.14 deleterious(0.04) probably_damaging(0.982) TCGA-D9-A6EC-06 3 184059766 184059766 C T FAM131A Intron 0.40 TCGA-D9-A6EC-06 3 184100175 184100175 A C CHRD Splice_Site p.X234_splice 0.08 TCGA-D9-A6EC-06 3 184100794 184100794 C T CHRD Intron 0.24 TCGA-D9-A6EC-06 3 18428094 18428094 A - SATB1 Frame_Shift_Del p.S406Qfs*19 0.29 TCGA-D9-A6EC-06 3 185165608 185165608 A C MAP3K13 Missense_Mutation p.I295L 0.14 deleterious(0.01) possibly_damaging(0.895) TCGA-D9-A6EC-06 3 185232249 185232249 G A LIPH Missense_Mutation p.T348I 0.18 tolerated(0.09) benign(0.02) TCGA-D9-A6EC-06 3 185823136 185823136 G A ETV5 Missense_Mutation p.P64S 0.66 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 3 185823718 185823718 G A ETV5 5'UTR 0.58 TCGA-D9-A6EC-06 3 185867924 185867924 C T DGKG Silent p.K777K 0.74 TCGA-D9-A6EC-06 3 186338606 186338606 G A AHSG Missense_Mutation p.G331R 0.70 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 3 186338607 186338607 G T AHSG Missense_Mutation p.G331V 0.71 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 3 186370169 186370169 C T FETUB Missense_Mutation p.P300S 0.59 tolerated(0.13) benign(0.222) TCGA-D9-A6EC-06 3 186971000 186971000 T G MASP1 Missense_Mutation p.N283T 0.04 tolerated(0.08) benign(0.033) TCGA-D9-A6EC-06 3 187442764 187442764 G A BCL6 Missense_Mutation p.H648Y 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 3 187442765 187442765 G A BCL6 Silent p.S647S 0.16 TCGA-D9-A6EC-06 3 189584556 189584556 G A TP63 Silent p.Q284Q 0.31 TCGA-D9-A6EC-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.29 deleterious(0.05) benign(0.012) TCGA-D9-A6EC-06 3 190105863 190105863 C T CLDN16 5'UTR 0.67 TCGA-D9-A6EC-06 3 190105893 190105893 C T CLDN16 5'UTR 0.68 TCGA-D9-A6EC-06 3 192053152 192053152 A C FGF12 Missense_Mutation p.S138A 0.13 deleterious(0.04) probably_damaging(0.956) TCGA-D9-A6EC-06 3 192125811 192125811 G A FGF12 Intron 0.23 TCGA-D9-A6EC-06 3 194118092 194118092 G A GP5 Missense_Mutation p.A307V 0.79 tolerated(0.17) benign(0.002) TCGA-D9-A6EC-06 3 194157933 194157933 A G ATP13A3 Missense_Mutation p.F671L 0.10 tolerated(0.06) benign(0.434) TCGA-D9-A6EC-06 3 194790389 194790389 G A XXYLT1 3'UTR 0.14 TCGA-D9-A6EC-06 3 194790449 194790449 C T XXYLT1 Missense_Mutation p.D393N 0.18 tolerated(0.07) benign(0.23) TCGA-D9-A6EC-06 3 195453337 195453337 G A MUC20 Silent p.T621T 0.22 TCGA-D9-A6EC-06 3 195501161 195501161 G A MUC4 Missense_Mutation p.P4320L 0.18 benign(0.177) TCGA-D9-A6EC-06 3 195594365 195594365 T C TNK2 Missense_Mutation p.K998R 0.13 tolerated_low_confidence(0.13) possibly_damaging(0.652) TCGA-D9-A6EC-06 3 195960090 195960090 G A SLC51A 3'UTR 0.20 TCGA-D9-A6EC-06 3 195965646 195965646 G A PCYT1A Silent p.S339S 0.24 TCGA-D9-A6EC-06 3 196054289 196054289 C T TM4SF19 Missense_Mutation p.G58E 0.46 tolerated(0.06) probably_damaging(1) TCGA-D9-A6EC-06 3 196083516 196083516 G A UBXN7 3'UTR 0.66 TCGA-D9-A6EC-06 3 196214354 196214354 T G RNF168 Missense_Mutation p.K158N 0.11 tolerated(0.13) benign(0.126) TCGA-D9-A6EC-06 3 196388306 196388306 T G NRROS Missense_Mutation p.C598G 0.12 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 196547275 196547275 A G PAK2 Missense_Mutation p.E396G 0.05 deleterious(0.03) probably_damaging(0.997) TCGA-D9-A6EC-06 3 196921432 196921432 G A DLG1 Missense_Mutation p.P116L 0.15 tolerated_low_confidence(0.11) benign(0.004) TCGA-D9-A6EC-06 3 196921433 196921433 G A DLG1 Missense_Mutation p.P116S 0.15 tolerated_low_confidence(0.3) benign(0.007) TCGA-D9-A6EC-06 3 197408196 197408196 T C KIAA0226 Missense_Mutation p.Y745C 0.10 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 3 197431411 197431411 A G KIAA0226 Splice_Site p.X155_splice 0.11 TCGA-D9-A6EC-06 3 197559098 197559098 C T LRCH3 Nonsense_Mutation p.R338* 0.13 TCGA-D9-A6EC-06 3 197598286 197598286 G A LRCH3 Missense_Mutation p.V695M 0.12 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 3 19924167 19924167 G A EFHB Missense_Mutation p.R735C 0.48 tolerated(0.08) benign(0.066) TCGA-D9-A6EC-06 3 20156418 20156418 C T KAT2B Missense_Mutation p.P363L 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-D9-A6EC-06 3 20189750 20189750 C T KAT2B Silent p.D724D 0.45 TCGA-D9-A6EC-06 3 21462821 21462821 C T ZNF385D Missense_Mutation p.R358Q 0.64 deleterious(0.02) possibly_damaging(0.885) TCGA-D9-A6EC-06 3 23934794 23934794 A G NKIRAS1 Missense_Mutation p.L124P 0.23 tolerated(0.14) benign(0.16) TCGA-D9-A6EC-06 3 23997594 23997594 T C NR1D2 Missense_Mutation p.V117A 0.64 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 3 24001300 24001300 A G NR1D2 Missense_Mutation p.R171G 0.28 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 3 24164407 24164407 G A THRB Missense_Mutation p.P452S 0.32 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 3 25622137 25622137 A T RARB Missense_Mutation p.K237I 0.33 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 3 27346424 27346424 G A NEK10 Missense_Mutation p.P281L 0.42 tolerated(0.17) benign(0.029) TCGA-D9-A6EC-06 3 27427417 27427417 T G SLC4A7 Missense_Mutation p.K1144T 0.18 deleterious(0) possibly_damaging(0.69) TCGA-D9-A6EC-06 3 2908441 2908441 A T CNTN4 Missense_Mutation p.S154C 0.23 tolerated(0.12) benign(0.041) TCGA-D9-A6EC-06 3 3067851 3067851 C T CNTN4 Missense_Mutation p.P518S 0.60 tolerated(0.11) probably_damaging(0.969) TCGA-D9-A6EC-06 3 3084839 3084839 G A CNTN4 Missense_Mutation p.R897Q 0.39 deleterious(0) benign(0.005) TCGA-D9-A6EC-06 3 32995348 32995348 C T CCR4 Missense_Mutation p.S145F 0.26 deleterious(0) probably_damaging(0.928) TCGA-D9-A6EC-06 3 33155730 33155730 A T CRTAP Missense_Mutation p.K54M 0.27 tolerated(0.14) benign(0.004) TCGA-D9-A6EC-06 3 36484943 36484943 G A STAC Missense_Mutation p.E67K 0.60 deleterious(0.01) benign(0.002) TCGA-D9-A6EC-06 3 36587754 36587754 C T STAC Silent p.I394I 0.66 TCGA-D9-A6EC-06 3 36779561 36779561 C T DCLK3 Missense_Mutation p.G197E 0.59 tolerated(0.22) benign(0.005) TCGA-D9-A6EC-06 3 36887777 36887777 C T TRANK1 Missense_Mutation p.R1674K 0.45 deleterious(0.04) benign(0.41) TCGA-D9-A6EC-06 3 36893246 36893246 A G TRANK1 Silent p.D1573D 0.16 TCGA-D9-A6EC-06 3 37323613 37323613 T G GOLGA4 Missense_Mutation p.S131R 0.19 benign(0.305) TCGA-D9-A6EC-06 3 37367900 37367900 A C GOLGA4 Missense_Mutation p.K1530T 0.37 benign(0.419) TCGA-D9-A6EC-06 3 38017265 38017265 A T CTDSPL Missense_Mutation p.E195D 0.18 deleterious(0.04) benign(0.233) TCGA-D9-A6EC-06 3 38136527 38136527 G A DLEC1 Missense_Mutation p.D693N 0.59 deleterious(0.03) benign(0.132) TCGA-D9-A6EC-06 3 38158708 38158708 G A DLEC1 Missense_Mutation p.E1439K 0.61 tolerated(0.62) benign(0.085) TCGA-D9-A6EC-06 3 38265336 38265336 A G OXSR1 Missense_Mutation p.S212G 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 38317580 38317580 C T SLC22A13 Silent p.I410I 0.25 TCGA-D9-A6EC-06 3 38348019 38348019 T G SLC22A14 Missense_Mutation p.S168A 0.15 deleterious(0.02) possibly_damaging(0.834) TCGA-D9-A6EC-06 3 38592103 38592103 A C SCN5A Silent p.S1920S 0.11 TCGA-D9-A6EC-06 3 38622533 38622533 G C SCN5A Silent p.P1039P 0.50 TCGA-D9-A6EC-06 3 38770339 38770339 C T SCN10A Silent p.K778K 0.31 TCGA-D9-A6EC-06 3 38781141 38781141 T G SCN10A Missense_Mutation p.K715N 0.10 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 38793949 38793949 G A SCN10A Missense_Mutation p.H506Y 0.78 tolerated(0.22) benign(0.303) TCGA-D9-A6EC-06 3 38927709 38927709 C T SCN11A Silent p.E952E 0.71 TCGA-D9-A6EC-06 3 38949457 38949457 C T SCN11A Missense_Mutation p.E486K 0.63 tolerated(0.44) benign(0.293) TCGA-D9-A6EC-06 3 38950496 38950496 C T SCN11A Missense_Mutation p.E431K 0.32 tolerated(0.43) probably_damaging(0.998) TCGA-D9-A6EC-06 3 38966959 38966959 G A SCN11A Missense_Mutation p.P220L 0.33 deleterious(0) benign(0.03) TCGA-D9-A6EC-06 3 38968341 38968341 G A SCN11A Silent p.F190F 0.66 TCGA-D9-A6EC-06 3 391070 391070 A C CHL1 Missense_Mutation p.I293L 0.12 tolerated(0.66) benign(0.001) TCGA-D9-A6EC-06 3 39307671 39307671 G A CX3CR1 Silent p.F142F 0.60 TCGA-D9-A6EC-06 3 40558204 40558204 C T ZNF620 Silent p.F373F 0.67 TCGA-D9-A6EC-06 3 41280772 41280772 T C CTNNB1 Missense_Mutation p.L762P 0.27 tolerated_low_confidence(0.14) benign(0) TCGA-D9-A6EC-06 3 42251777 42251777 C T TRAK1 Intron 0.62 TCGA-D9-A6EC-06 3 42577756 42577756 G A VIPR1 Missense_Mutation p.E453K 0.58 deleterious(0) probably_damaging(0.95) TCGA-D9-A6EC-06 3 42794141 42794141 A C CCDC13 Missense_Mutation p.L147V 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-D9-A6EC-06 3 42950396 42950396 C T ZNF662 Missense_Mutation p.S109F 0.41 tolerated(0.7) benign(0.007) TCGA-D9-A6EC-06 3 4345113 4345113 A C SETMAR Missense_Mutation p.K20T 0.27 deleterious_low_confidence(0.03) benign(0.231) TCGA-D9-A6EC-06 3 44598507 44598507 T G ZKSCAN7 5'UTR 0.19 TCGA-D9-A6EC-06 3 44700666 44700666 A C ZNF35 Missense_Mutation p.I271L 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-D9-A6EC-06 3 44816856 44816856 G C KIF15 Missense_Mutation p.S58T 0.30 tolerated(1) benign(0.004) TCGA-D9-A6EC-06 3 45127257 45127257 G A CDCP1 Missense_Mutation p.P795L 0.52 tolerated_low_confidence(0.06) benign(0.046) TCGA-D9-A6EC-06 3 45127464 45127464 C T CDCP1 Missense_Mutation p.R726Q 0.58 deleterious(0.04) benign(0.392) TCGA-D9-A6EC-06 3 45153790 45153790 C T CDCP1 Missense_Mutation p.R147K 0.65 tolerated(0.11) benign(0.034) TCGA-D9-A6EC-06 3 46021202 46021202 A C FYCO1 Missense_Mutation p.S95A 0.31 tolerated(0.09) possibly_damaging(0.644) TCGA-D9-A6EC-06 3 46063227 46063227 G A XCR1 Silent p.L71L 0.22 TCGA-D9-A6EC-06 3 46063255 46063255 A G XCR1 Missense_Mutation p.L62P 0.17 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 3 46245815 46245815 C T CCR1 Intron 0.50 TCGA-D9-A6EC-06 3 46399709 46399709 C T CCR2 Missense_Mutation p.R231W 0.31 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 3 46492037 46492037 C T LTF Missense_Mutation p.R277Q 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 3 46620619 46620619 G A TDGF1 Missense_Mutation p.E24K 0.45 deleterious(0.02) possibly_damaging(0.656) TCGA-D9-A6EC-06 3 46904947 46904947 T C MYL3 5'Flank 0.40 TCGA-D9-A6EC-06 3 46944031 46944031 C T PTH1R Silent p.S409S 0.28 TCGA-D9-A6EC-06 3 46963508 46963508 G A CCDC12 3'UTR 0.39 TCGA-D9-A6EC-06 3 47036849 47036849 G T NBEAL2 Nonsense_Mutation p.G542* 0.38 TCGA-D9-A6EC-06 3 47036850 47036850 G A NBEAL2 Missense_Mutation p.G542E 0.33 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 3 47036851 47036851 A T NBEAL2 Silent p.G542G 0.32 TCGA-D9-A6EC-06 3 47037099 47037099 C T NBEAL2 Missense_Mutation p.P625L 0.33 tolerated(0.08) benign(0.3) TCGA-D9-A6EC-06 3 47162311 47162311 T G SETD2 Missense_Mutation p.Q1272P 0.11 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 3 47385500 47385500 C T KLHL18 3'UTR 0.64 TCGA-D9-A6EC-06 3 47462061 47462061 C T SCAP Missense_Mutation p.A516T 0.72 tolerated(0.14) possibly_damaging(0.714) TCGA-D9-A6EC-06 3 47734757 47734757 A C SMARCC1 Missense_Mutation p.V400G 0.72 deleterious(0.04) benign(0.022) TCGA-D9-A6EC-06 3 4808393 4808393 A C ITPR1 Missense_Mutation p.K1893N 0.24 tolerated(0.32) benign(0.112) TCGA-D9-A6EC-06 3 48419920 48419920 G A FBXW12 Nonsense_Mutation p.W173* 0.30 TCGA-D9-A6EC-06 3 48716881 48716881 T G NCKIPSD Missense_Mutation p.K500T 0.35 deleterious(0.01) benign(0.269) TCGA-D9-A6EC-06 3 49050921 49050921 A C WDR6 Missense_Mutation p.N682H 0.15 tolerated(0.17) benign(0.001) TCGA-D9-A6EC-06 3 49051255 49051255 C T WDR6 Missense_Mutation p.S793L 0.69 deleterious(0.04) benign(0.032) TCGA-D9-A6EC-06 3 49155497 49155497 G A USP19 Missense_Mutation p.P61S 0.33 tolerated_low_confidence(0.85) benign(0) TCGA-D9-A6EC-06 3 49339946 49339946 A C USP4 Missense_Mutation p.F386L 0.21 deleterious(0) probably_damaging(0.954) TCGA-D9-A6EC-06 3 49400021 49400021 A C RHOA Missense_Mutation p.F106V 0.28 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 3 49569202 49569202 C T DAG1 Missense_Mutation p.P420S 0.24 tolerated(0.41) benign(0.194) TCGA-D9-A6EC-06 3 49662816 49662816 G A BSN Silent p.Q211Q 0.31 TCGA-D9-A6EC-06 3 49662817 49662817 G A BSN Splice_Site p.X211_splice 0.31 TCGA-D9-A6EC-06 3 49689252 49689252 G A BSN Missense_Mutation p.E755K 0.32 unknown(0) TCGA-D9-A6EC-06 3 49689344 49689344 A C BSN Missense_Mutation p.E785D 0.43 unknown(0) TCGA-D9-A6EC-06 3 49698254 49698254 A C BSN Missense_Mutation p.K2992N 0.15 unknown(0) TCGA-D9-A6EC-06 3 49699953 49699953 T C BSN Missense_Mutation p.Y3559H 0.08 unknown(0) TCGA-D9-A6EC-06 3 49720046 49720046 C T APEH Missense_Mutation p.S587F 0.53 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 3 49728662 49728662 G A RNF123 Missense_Mutation p.E22K 0.64 deleterious_low_confidence(0.02) benign(0.218) TCGA-D9-A6EC-06 3 49866548 49866548 G A TRAIP Silent p.F466F 0.33 TCGA-D9-A6EC-06 3 49929222 49929222 A C MST1R Missense_Mutation p.N1107K 0.21 tolerated(0.27) benign(0.445) TCGA-D9-A6EC-06 3 50005998 50005998 A C RBM6 Silent p.S380S 0.29 TCGA-D9-A6EC-06 3 50107964 50107964 A G RBM6 Missense_Mutation p.K1032R 0.11 tolerated(0.7) benign(0.05) TCGA-D9-A6EC-06 3 50220138 50220138 T G SEMA3F Silent p.L275L 0.23 TCGA-D9-A6EC-06 3 50334539 50334539 A G NAT6 Missense_Mutation p.V141A 0.30 tolerated(0.44) benign(0.047) TCGA-D9-A6EC-06 3 50413309 50413309 G A CACNA2D2 Silent p.I592I 0.32 TCGA-D9-A6EC-06 3 50421708 50421708 A C CACNA2D2 Missense_Mutation p.F191V 0.05 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 3 51746758 51746758 A C GRM2 Missense_Mutation p.K240N 0.31 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 3 52130706 52130706 G A POC1A Missense_Mutation p.P335L 0.28 tolerated(0.05) benign(0.005) TCGA-D9-A6EC-06 3 52263739 52263739 T C TLR9 Missense_Mutation p.S135G 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.894) TCGA-D9-A6EC-06 3 52360843 52360843 A G DNAH1 Missense_Mutation p.H225R 0.27 benign(0) TCGA-D9-A6EC-06 3 52392002 52392002 T C DNAH1 Missense_Mutation p.F1357L 0.32 probably_damaging(0.986) TCGA-D9-A6EC-06 3 52476217 52476217 A C SEMA3G Missense_Mutation p.V148G 0.31 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 52511636 52511636 T C NISCH Missense_Mutation p.L322S 0.17 deleterious(0) possibly_damaging(0.704) TCGA-D9-A6EC-06 3 52512203 52512203 T C NISCH Silent p.L360L 0.22 TCGA-D9-A6EC-06 3 52518642 52518642 C T NISCH Missense_Mutation p.P548S 0.54 tolerated(0.48) benign(0.04) TCGA-D9-A6EC-06 3 52643791 52643791 T G PBRM1 Missense_Mutation p.K702T 0.11 deleterious(0) possibly_damaging(0.47) TCGA-D9-A6EC-06 3 52723169 52723169 A G GNL3 Missense_Mutation p.E163G 0.25 deleterious(0) possibly_damaging(0.603) TCGA-D9-A6EC-06 3 52731836 52731836 A C GLT8D1 Missense_Mutation p.L77R 0.25 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 52794938 52794938 T G NEK4 Missense_Mutation p.N279T 0.26 tolerated(0.2) benign(0.019) TCGA-D9-A6EC-06 3 52863157 52863157 C T ITIH4 Missense_Mutation p.A77T 0.50 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 52867645 52867645 T C TMEM110-MUSTN1 Missense_Mutation p.M334V 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-D9-A6EC-06 3 52874586 52874586 A G TMEM110 Missense_Mutation p.V270A 0.16 tolerated(0.78) benign(0) TCGA-D9-A6EC-06 3 53219636 53219636 C T PRKCD Missense_Mutation p.S302L 0.62 tolerated(0.12) benign(0.001) TCGA-D9-A6EC-06 3 53226261 53226261 C T PRKCD Silent p.F670F 0.65 TCGA-D9-A6EC-06 3 53810000 53810000 G A CACNA1D Silent p.G1450G 0.60 TCGA-D9-A6EC-06 3 53853695 53853695 C T CHDH Missense_Mutation p.G376E 0.67 deleterious(0) probably_damaging(0.924) TCGA-D9-A6EC-06 3 54157593 54157593 A C CACNA2D3 Missense_Mutation p.K59T 0.25 tolerated(0.13) possibly_damaging(0.494) TCGA-D9-A6EC-06 3 54905576 54905576 G A CACNA2D3 Missense_Mutation p.G546E 0.30 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 3 54919532 54919532 G A CACNA2D3 Missense_Mutation p.D659N 0.79 tolerated(0.11) possibly_damaging(0.678) TCGA-D9-A6EC-06 3 54952512 54952512 C T LRTM1 Missense_Mutation p.E338K 0.59 deleterious(0.04) benign(0.096) TCGA-D9-A6EC-06 3 54962006 54962006 G A LRTM1 5'UTR 0.65 TCGA-D9-A6EC-06 3 56468694 56468694 G A ERC2 Silent p.V114V 0.61 TCGA-D9-A6EC-06 3 56763337 56763337 A T ARHGEF3 Silent p.S546S 0.12 TCGA-D9-A6EC-06 3 57303546 57303546 T A ASB14 3'UTR 0.23 TCGA-D9-A6EC-06 3 62355738 62355738 G A FEZF2 3'UTR 0.25 TCGA-D9-A6EC-06 3 62385117 62385117 C T CADPS Missense_Mutation p.M1342I 0.30 deleterious_low_confidence(0) benign(0.019) TCGA-D9-A6EC-06 3 62423848 62423848 G A CADPS Silent p.F1236F 0.39 TCGA-D9-A6EC-06 3 62464069 62464069 C A CADPS Missense_Mutation p.D1066Y 0.25 deleterious(0) possibly_damaging(0.861) TCGA-D9-A6EC-06 3 64133275 64133275 G A PRICKLE2 Silent p.F297F 0.29 TCGA-D9-A6EC-06 3 65349240 65349240 C T MAGI1 Missense_Mutation p.G1132E 0.74 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 66436843 66436843 C T LRIG1 Intron 0.60 TCGA-D9-A6EC-06 3 68587911 68587911 C T FAM19A1 Silent p.S88S 0.15 TCGA-D9-A6EC-06 3 68587931 68587931 G T FAM19A1 Missense_Mutation p.W95L 0.17 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 3 68782286 68782286 C T FAM19A4 3'UTR 0.69 TCGA-D9-A6EC-06 3 69928497 69928497 T G MITF Missense_Mutation p.L106R 0.09 tolerated(0.63) possibly_damaging(0.595) TCGA-D9-A6EC-06 3 7188288 7188288 C T GRM7 Silent p.T223T 0.34 TCGA-D9-A6EC-06 3 77147455 77147455 G A ROBO2 Missense_Mutation p.E134K 0.20 tolerated(0.06) unknown(0) TCGA-D9-A6EC-06 3 77542460 77542460 C T ROBO2 Missense_Mutation p.R261C 0.15 tolerated(0.06) possibly_damaging(0.898) TCGA-D9-A6EC-06 3 77595591 77595591 T A ROBO2 Missense_Mutation p.F362Y 0.67 deleterious(0) benign(0.418) TCGA-D9-A6EC-06 3 78700963 78700963 G A ROBO1 Missense_Mutation p.L911F 0.78 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 3 85961620 85961620 G T CADM2 Silent p.A202A 0.27 TCGA-D9-A6EC-06 3 88205661 88205661 C T C3orf38 Missense_Mutation p.P289L 0.45 deleterious(0) probably_damaging(0.941) TCGA-D9-A6EC-06 3 89521768 89521768 G A EPHA3 Missense_Mutation p.D949N 0.71 deleterious(0.02) benign(0.075) TCGA-D9-A6EC-06 3 9027440 9027440 G A SRGAP3 Silent p.P1021P 0.65 TCGA-D9-A6EC-06 3 9032337 9032337 C T SRGAP3 Silent p.A915A 0.22 TCGA-D9-A6EC-06 3 9055470 9055470 G A SRGAP3 Missense_Mutation p.P624S 0.68 tolerated(0.06) benign(0.017) TCGA-D9-A6EC-06 3 9068638 9068638 G A SRGAP3 Silent p.I527I 0.67 TCGA-D9-A6EC-06 3 93624867 93624867 A C PROS1 Missense_Mutation p.F156C 0.34 tolerated(0.05) possibly_damaging(0.571) TCGA-D9-A6EC-06 3 97596263 97596263 C T CRYBG3 Silent p.A127A 0.39 TCGA-D9-A6EC-06 3 9798868 9798868 A G OGG1 Intron 0.22 TCGA-D9-A6EC-06 3 98002225 98002225 A T OR5H2 Missense_Mutation p.E165V 0.56 tolerated(1) benign(0.006) TCGA-D9-A6EC-06 3 98189118 98189118 G A OR5K1 Missense_Mutation p.G233E 0.42 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 3 9845627 9845627 A G ARPC4 Missense_Mutation p.K163R 0.19 tolerated(0.07) benign(0.072) TCGA-D9-A6EC-06 3 99513686 99513686 G A COL8A1 Missense_Mutation p.G314E 0.94 deleterious(0) unknown(0) TCGA-D9-A6EC-06 3 99536842 99536842 G A CMSS1 Missense_Mutation p.D7N 0.93 tolerated(0.06) benign(0.227) TCGA-D9-A6EC-06 4 100200661 100200661 G A ADH1A Missense_Mutation p.S342L 0.28 tolerated(0.2) benign(0.039) TCGA-D9-A6EC-06 4 100356457 100356457 C T ADH7 5'Flank 0.75 TCGA-D9-A6EC-06 4 100477310 100477310 T G TRMT10A Missense_Mutation p.N163T 0.29 deleterious(0) probably_damaging(0.942) TCGA-D9-A6EC-06 4 100543843 100543843 G A MTTP Silent p.E841E 0.32 TCGA-D9-A6EC-06 4 10079017 10079017 G A WDR1 Missense_Mutation p.P542L 0.92 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 4 102946616 102946616 G A BANK1 Missense_Mutation p.R515Q 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-D9-A6EC-06 4 104044090 104044090 G A CENPE Missense_Mutation p.P2361S 0.59 benign(0.007) TCGA-D9-A6EC-06 4 10444681 10444681 A C ZNF518B 3'UTR 0.36 TCGA-D9-A6EC-06 4 105412204 105412204 G A CXXC4 Silent p.I252I 0.29 TCGA-D9-A6EC-06 4 106552190 106552190 T A ARHGEF38 Missense_Mutation p.I215N 0.13 deleterious(0) benign(0.234) TCGA-D9-A6EC-06 4 106819106 106819106 G A NPNT Silent p.G40G 0.34 TCGA-D9-A6EC-06 4 107845215 107845215 C T DKK2 Missense_Mutation p.E226K 0.65 deleterious(0) probably_damaging(0.971) TCGA-D9-A6EC-06 4 108608297 108608297 T G PAPSS1 Missense_Mutation p.S150R 0.08 deleterious(0.03) benign(0.006) TCGA-D9-A6EC-06 4 108955408 108955408 G A HADH Missense_Mutation p.M297I 0.30 tolerated(0.2) benign(0) TCGA-D9-A6EC-06 4 108955409 108955409 G A HADH Missense_Mutation p.D298N 0.30 tolerated(0.31) benign(0.002) TCGA-D9-A6EC-06 4 110402868 110402868 A G SEC24B Missense_Mutation p.S366G 0.25 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-D9-A6EC-06 4 110635522 110635522 C T PLA2G12A 3'UTR 0.54 TCGA-D9-A6EC-06 4 110682671 110682671 A C CFI Splice_Site p.X220_splice 0.23 TCGA-D9-A6EC-06 4 110687912 110687912 G A CFI Silent p.S42S 0.34 TCGA-D9-A6EC-06 4 110866321 110866321 G A EGF Missense_Mutation p.G277E 0.59 deleterious(0) probably_damaging(0.984) TCGA-D9-A6EC-06 4 113352339 113352339 C T ALPK1 Nonsense_Mutation p.R546* 0.62 TCGA-D9-A6EC-06 4 114277162 114277162 C T ANK2 Missense_Mutation p.S2463F 0.55 probably_damaging(1) TCGA-D9-A6EC-06 4 114290689 114290689 G A ANK2 Missense_Mutation p.E3780K 0.29 possibly_damaging(0.753) TCGA-D9-A6EC-06 4 114823682 114823682 C T ARSJ Silent p.V516V 0.59 TCGA-D9-A6EC-06 4 115858560 115858560 A T NDST4 Missense_Mutation p.W441R 0.75 deleterious(0.02) probably_damaging(0.998) TCGA-D9-A6EC-06 4 118005338 118005338 G A TRAM1L1 3'UTR 0.35 TCGA-D9-A6EC-06 4 118006024 118006024 A T TRAM1L1 Missense_Mutation p.W176R 0.33 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 4 119154282 119154282 G A NDST3 Silent p.G645G 0.47 TCGA-D9-A6EC-06 4 119631261 119631261 T G METTL14 Missense_Mutation p.I392S 0.25 deleterious(0) probably_damaging(0.979) TCGA-D9-A6EC-06 4 119978694 119978694 C T SYNPO2 Missense_Mutation p.P1131S 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 4 119979005 119979005 C T SYNPO2 Silent p.S1234S 0.35 TCGA-D9-A6EC-06 4 122068317 122068317 C T TNIP3 Missense_Mutation p.E285K 0.71 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 4 122766751 122766751 C A BBS7 Missense_Mutation p.G380C 0.21 deleterious(0.04) benign(0.178) TCGA-D9-A6EC-06 4 122853843 122853843 G A TRPC3 Silent p.I190I 0.30 TCGA-D9-A6EC-06 4 123333892 123333892 G A ADAD1 Missense_Mutation p.E393K 0.26 tolerated(0.05) benign(0.175) TCGA-D9-A6EC-06 4 123536882 123536882 C T IL21 Silent p.R105R 0.31 TCGA-D9-A6EC-06 4 126242427 126242427 C T FAT4 Missense_Mutation p.L1621F 0.27 probably_damaging(0.995) TCGA-D9-A6EC-06 4 126242682 126242682 C T FAT4 Silent p.L1706L 0.40 TCGA-D9-A6EC-06 4 126336956 126336956 C T FAT4 Missense_Mutation p.L2280F 0.29 probably_damaging(0.997) TCGA-D9-A6EC-06 4 126369711 126369711 C T FAT4 Missense_Mutation p.H2514Y 0.24 benign(0.428) TCGA-D9-A6EC-06 4 126408530 126408530 G A FAT4 Missense_Mutation p.D4283N 0.62 possibly_damaging(0.764) TCGA-D9-A6EC-06 4 126411466 126411466 G A FAT4 Missense_Mutation p.E4497K 0.22 benign(0.007) TCGA-D9-A6EC-06 4 126411575 126411575 A C FAT4 Missense_Mutation p.K4533T 0.25 benign(0.051) TCGA-D9-A6EC-06 4 128632099 128632099 C T INTU Missense_Mutation p.H801Y 0.20 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 4 128814498 128814498 T G PLK4 Silent p.S749S 0.22 TCGA-D9-A6EC-06 4 128814738 128814738 T G PLK4 Missense_Mutation p.F798C 0.16 deleterious(0.05) probably_damaging(0.968) TCGA-D9-A6EC-06 4 13338307 13338307 G A HSP90AB2P RNA 0.86 TCGA-D9-A6EC-06 4 138442640 138442640 G A PCDH18 Missense_Mutation p.S984F 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-D9-A6EC-06 4 138451538 138451538 C T PCDH18 Missense_Mutation p.E569K 0.60 tolerated(0.2) probably_damaging(0.999) TCGA-D9-A6EC-06 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.43 deleterious(0.02) possibly_damaging(0.861) TCGA-D9-A6EC-06 4 1388824 1388824 A G CRIPAK Silent p.G175G 0.31 TCGA-D9-A6EC-06 4 1388870 1388870 A G CRIPAK Missense_Mutation p.T191A 0.11 tolerated(0.16) benign(0.388) TCGA-D9-A6EC-06 4 139157480 139157480 G A SLC7A11 Missense_Mutation p.R135C 0.52 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 4 139981611 139981611 T G ELF2 Missense_Mutation p.N330H 0.23 tolerated(0.16) benign(0.005) TCGA-D9-A6EC-06 4 140640671 140640671 A C MAML3 Missense_Mutation p.F1075V 0.19 probably_damaging(0.997) TCGA-D9-A6EC-06 4 141464686 141464686 C T ELMOD2 Missense_Mutation p.L228F 0.45 tolerated(1) benign(0.083) TCGA-D9-A6EC-06 4 141471529 141471529 A C ELMOD2 Nonstop_Mutation p.*294Yext*26 0.33 TCGA-D9-A6EC-06 4 141484290 141484290 G A UCP1 Missense_Mutation p.A201V 0.23 tolerated(0.31) possibly_damaging(0.582) TCGA-D9-A6EC-06 4 141600151 141600151 G A TBC1D9 Nonsense_Mutation p.R266* 0.61 TCGA-D9-A6EC-06 4 143352383 143352383 T C INPP4B Silent p.E10E 0.32 TCGA-D9-A6EC-06 4 144361305 144361305 C T GAB1 Missense_Mutation p.P452L 0.32 deleterious(0) possibly_damaging(0.767) TCGA-D9-A6EC-06 4 144381566 144381566 A G GAB1 Missense_Mutation p.T607A 0.23 tolerated(0.39) benign(0.008) TCGA-D9-A6EC-06 4 145032484 145032484 C T GYPA 3'UTR 0.44 TCGA-D9-A6EC-06 4 145040857 145040857 G A GYPA Missense_Mutation p.P72S 0.20 tolerated(0.15) benign(0.069) TCGA-D9-A6EC-06 4 145629419 145629419 C T HHIP Silent p.N419N 0.53 TCGA-D9-A6EC-06 4 145635493 145635493 C T HHIP Missense_Mutation p.R514C 0.56 deleterious(0.01) benign(0.402) TCGA-D9-A6EC-06 4 145659138 145659138 C T HHIP 3'UTR 0.31 TCGA-D9-A6EC-06 4 145659174 145659174 A C HHIP 3'UTR 0.29 TCGA-D9-A6EC-06 4 146824018 146824018 G A ZNF827 Silent p.S131S 0.30 TCGA-D9-A6EC-06 4 147177567 147177567 A G SLC10A7 3'UTR 0.16 TCGA-D9-A6EC-06 4 149357071 149357071 C T NR3C2 Silent p.S314S 0.58 TCGA-D9-A6EC-06 4 151504634 151504634 G A MAB21L2 Missense_Mutation p.M151I 0.21 tolerated(0.17) benign(0.013) TCGA-D9-A6EC-06 4 151520191 151520191 G A LRBA Missense_Mutation p.P2005L 0.49 tolerated(0.1) probably_damaging(1) TCGA-D9-A6EC-06 4 154626391 154626391 C T TLR2 Silent p.L778L 0.33 TCGA-D9-A6EC-06 4 154649358 154649358 C T RNF175 Splice_Site p.X134_splice 0.22 TCGA-D9-A6EC-06 4 154649471 154649471 T C RNF175 Missense_Mutation p.T97A 0.23 tolerated(0.12) probably_damaging(0.989) TCGA-D9-A6EC-06 4 155241570 155241570 C T DCHS2 Missense_Mutation p.G1206R 0.34 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 4 155242271 155242271 G A DCHS2 Missense_Mutation p.S972L 0.62 tolerated(0.71) benign(0.033) TCGA-D9-A6EC-06 4 155487711 155487711 G C FGB Missense_Mutation p.S126T 0.29 tolerated(0.41) benign(0.004) TCGA-D9-A6EC-06 4 155527972 155527972 G A FGG Silent p.F338F 0.28 TCGA-D9-A6EC-06 4 155527985 155527985 T G FGG Missense_Mutation p.N334T 0.09 deleterious(0) probably_damaging(0.955) TCGA-D9-A6EC-06 4 156135365 156135365 C T NPY2R Silent p.L92L 0.44 TCGA-D9-A6EC-06 4 156631709 156631709 T C GUCY1A3 Missense_Mutation p.V131A 0.32 tolerated(0.74) benign(0.001) TCGA-D9-A6EC-06 4 158059975 158059975 G A GLRB Missense_Mutation p.D209N 0.26 tolerated(1) benign(0.272) TCGA-D9-A6EC-06 4 158091610 158091610 T G GLRB Silent p.V408V 0.17 TCGA-D9-A6EC-06 4 158281118 158281118 G C GRIA2 Missense_Mutation p.R705T 0.70 deleterious(0.02) benign(0.171) TCGA-D9-A6EC-06 4 159573245 159573245 G A RXFP1 3'UTR 0.53 TCGA-D9-A6EC-06 4 159825734 159825734 A C FNIP2 3'UTR 0.28 TCGA-D9-A6EC-06 4 15993968 15993968 A G PROM1 Missense_Mutation p.L605P 0.08 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 4 162306931 162306931 C T FSTL5 Missense_Mutation p.G838R 0.62 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 4 164247434 164247434 G A NPY1R Silent p.I91I 0.60 TCGA-D9-A6EC-06 4 16504337 16504337 G A LDB2 Missense_Mutation p.P351S 0.91 tolerated(0.11) benign(0.013) TCGA-D9-A6EC-06 4 167675692 167675692 T C SPOCK3 Missense_Mutation p.N303D 0.31 tolerated(0.23) possibly_damaging(0.579) TCGA-D9-A6EC-06 4 167675732 167675732 G A SPOCK3 Silent p.F289F 0.26 TCGA-D9-A6EC-06 4 167675875 167675875 C T SPOCK3 Missense_Mutation p.D242N 0.41 deleterious(0) possibly_damaging(0.67) TCGA-D9-A6EC-06 4 169204672 169204672 G A DDX60 Silent p.V549V 0.29 TCGA-D9-A6EC-06 4 169227763 169227763 T C DDX60 Missense_Mutation p.R125G 0.26 tolerated(1) benign(0) TCGA-D9-A6EC-06 4 169351640 169351640 C T DDX60L Missense_Mutation p.E556K 0.44 tolerated(1) benign(0) TCGA-D9-A6EC-06 4 170028123 170028123 G A SH3RF1 Silent p.A791A 0.25 TCGA-D9-A6EC-06 4 170315598 170315598 T A NEK1 3'UTR 0.33 TCGA-D9-A6EC-06 4 173269756 173269756 C T GALNTL6 Silent p.L157L 0.24 TCGA-D9-A6EC-06 4 173804044 173804044 G A GALNTL6 Missense_Mutation p.E343K 0.37 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 4 175710078 175710078 C T GLRA3 Missense_Mutation p.E30K 0.33 deleterious(0.01) benign(0.008) TCGA-D9-A6EC-06 4 177052741 177052741 C T WDR17 Missense_Mutation p.S341F 0.57 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 4 177069382 177069382 C T WDR17 Missense_Mutation p.P622L 0.28 tolerated(0.05) probably_damaging(1) TCGA-D9-A6EC-06 4 177604971 177604971 C - VEGFC 3'UTR 0.18 TCGA-D9-A6EC-06 4 177605053 177605053 G A VEGFC 3'UTR 0.60 TCGA-D9-A6EC-06 4 183714156 183714156 C T TENM3 Missense_Mutation p.R2111W 0.62 deleterious(0) possibly_damaging(0.876) TCGA-D9-A6EC-06 4 183714285 183714285 G A TENM3 Missense_Mutation p.D2154N 0.25 deleterious(0) possibly_damaging(0.821) TCGA-D9-A6EC-06 4 184615119 184615119 A G TRAPPC11 Silent p.T812T 0.36 TCGA-D9-A6EC-06 4 184615844 184615844 G A TRAPPC11 Missense_Mutation p.E866K 0.22 tolerated(0.29) benign(0.01) TCGA-D9-A6EC-06 4 184930405 184930405 C T STOX2 Silent p.I138I 0.76 TCGA-D9-A6EC-06 4 185038131 185038131 C T ENPP6 Missense_Mutation p.D245N 0.32 tolerated(0.13) probably_damaging(1) TCGA-D9-A6EC-06 4 185698039 185698039 T A ACSL1 Missense_Mutation p.K192N 0.31 deleterious(0.02) benign(0.047) TCGA-D9-A6EC-06 4 185940951 185940951 C T HELT Silent p.Y146Y 0.17 TCGA-D9-A6EC-06 4 186379307 186379307 T C CCDC110 Missense_Mutation p.S812G 0.12 tolerated(0.11) possibly_damaging(0.516) TCGA-D9-A6EC-06 4 187118751 187118751 T G CYP4V2 Silent p.V223V 0.08 TCGA-D9-A6EC-06 4 187120183 187120183 A C CYP4V2 Missense_Mutation p.K249N 0.15 tolerated(0.27) benign(0.099) TCGA-D9-A6EC-06 4 187171539 187171539 G A KLKB1 Nonsense_Mutation p.W247* 0.29 TCGA-D9-A6EC-06 4 187532836 187532836 G A FAT1 Missense_Mutation p.P3186L 0.31 possibly_damaging(0.555) TCGA-D9-A6EC-06 4 188924151 188924151 G A ZFP42 Missense_Mutation p.G64R 0.23 tolerated(0.15) benign(0.015) TCGA-D9-A6EC-06 4 189060706 189060706 C T TRIML1 5'UTR 0.28 TCGA-D9-A6EC-06 4 189064851 189064851 C T TRIML1 Intron 0.34 TCGA-D9-A6EC-06 4 189065276 189065276 G A TRIML1 Missense_Mutation p.R282K 0.35 tolerated(0.85) benign(0.004) TCGA-D9-A6EC-06 4 1902911 1902911 C T WHSC1 Missense_Mutation p.S177F 0.92 deleterious(0.05) benign(0.342) TCGA-D9-A6EC-06 4 20555495 20555495 G A SLIT2 Missense_Mutation p.E877K 0.38 deleterious(0.01) benign(0.119) TCGA-D9-A6EC-06 4 22748959 22748959 A C GBA3 Missense_Mutation p.K109N 0.11 deleterious(0.04) benign(0.028) TCGA-D9-A6EC-06 4 25849203 25849203 T G SEL1L3 Missense_Mutation p.K149T 0.48 tolerated(0.07) benign(0.048) TCGA-D9-A6EC-06 4 2661593 2661593 C T FAM193A Silent p.D228D 0.78 TCGA-D9-A6EC-06 4 2661594 2661594 C T FAM193A Missense_Mutation p.P229S 0.79 tolerated(0.69) benign(0.185) TCGA-D9-A6EC-06 4 3174747 3174747 C T HTT Missense_Mutation p.P1352L 0.90 possibly_damaging(0.824) TCGA-D9-A6EC-06 4 3189422 3189422 C T HTT Silent p.A1678A 0.93 TCGA-D9-A6EC-06 4 38830150 38830150 T G TLR6 Missense_Mutation p.Q315H 0.26 deleterious(0.04) benign(0.005) TCGA-D9-A6EC-06 4 40337955 40337955 C T CHRNA9 Missense_Mutation p.T59I 0.25 deleterious(0.04) probably_damaging(0.988) TCGA-D9-A6EC-06 4 40351380 40351380 C T CHRNA9 Nonsense_Mutation p.Q283* 0.33 TCGA-D9-A6EC-06 4 40356570 40356570 A T CHRNA9 3'UTR 0.08 TCGA-D9-A6EC-06 4 40438455 40438455 G A RBM47 Intron 0.40 TCGA-D9-A6EC-06 4 40440145 40440145 C T RBM47 Missense_Mutation p.E256K 0.56 tolerated(0.24) benign(0.018) TCGA-D9-A6EC-06 4 40946967 40946967 C T APBB2 Missense_Mutation p.R320Q 0.28 tolerated(0.32) benign(0.184) TCGA-D9-A6EC-06 4 41266174 41266174 T C UCHL1 Missense_Mutation p.L194P 0.10 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 4 42119656 42119656 C T BEND4 Missense_Mutation p.R495Q 0.50 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-D9-A6EC-06 4 42467090 42467090 A T ATP8A1 Silent p.V776V 0.71 TCGA-D9-A6EC-06 4 42557987 42557987 G A ATP8A1 Missense_Mutation p.H471Y 0.50 deleterious(0.05) probably_damaging(0.992) TCGA-D9-A6EC-06 4 42895410 42895410 G A GRXCR1 Missense_Mutation p.D43N 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-D9-A6EC-06 4 42964913 42964913 C T GRXCR1 Missense_Mutation p.P130L 0.21 deleterious(0.05) benign(0.048) TCGA-D9-A6EC-06 4 436590 436590 G C ZNF721 Missense_Mutation p.P556A 0.79 deleterious(0.01) possibly_damaging(0.788) TCGA-D9-A6EC-06 4 46060622 46060622 C T GABRG1 Missense_Mutation p.E215K 0.41 deleterious(0) benign(0.343) TCGA-D9-A6EC-06 4 46263895 46263895 T G GABRA2 Intron 0.56 TCGA-D9-A6EC-06 4 46334683 46334683 G A GABRA2 Silent p.V68V 0.28 TCGA-D9-A6EC-06 4 46967040 46967040 C T GABRA4 Missense_Mutation p.E361K 0.61 tolerated(0.71) possibly_damaging(0.665) TCGA-D9-A6EC-06 4 47033592 47033592 A T GABRB1 5'UTR 0.59 TCGA-D9-A6EC-06 4 47408763 47408763 C T GABRB1 Silent p.I300I 0.31 TCGA-D9-A6EC-06 4 47597918 47597918 A G CORIN Silent p.G983G 0.12 TCGA-D9-A6EC-06 4 47746515 47746515 G A CORIN Missense_Mutation p.P235S 0.29 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 4 47901134 47901134 G A NFXL1 Missense_Mutation p.P277L 0.25 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 4 47953434 47953434 C T CNGA1 Missense_Mutation p.E127K 0.23 tolerated_low_confidence(0.35) benign(0.01) TCGA-D9-A6EC-06 4 48038237 48038237 G A NIPAL1 3'UTR 0.31 TCGA-D9-A6EC-06 4 48381809 48381809 A T SLAIN2 Missense_Mutation p.N269I 0.22 deleterious(0) possibly_damaging(0.885) TCGA-D9-A6EC-06 4 48424030 48424030 C T SLAIN2 Missense_Mutation p.S561F 0.53 tolerated(0.88) probably_damaging(0.93) TCGA-D9-A6EC-06 4 48537758 48537758 A C FRYL Missense_Mutation p.C2160W 0.36 deleterious(0.02) possibly_damaging(0.897) TCGA-D9-A6EC-06 4 48894838 48894838 A C OCIAD2 Missense_Mutation p.F112V 0.09 tolerated(0.27) benign(0.016) TCGA-D9-A6EC-06 4 49032928 49032928 T C CWH43 Silent p.L487L 0.32 TCGA-D9-A6EC-06 4 49063936 49063936 G A CWH43 3'UTR 0.80 TCGA-D9-A6EC-06 4 54424116 54424116 A C LNX1 Intron 0.18 TCGA-D9-A6EC-06 4 55155063 55155063 A G PDGFRA Silent p.E924E 0.21 TCGA-D9-A6EC-06 4 55956169 55956169 A C KDR Missense_Mutation p.L1049W 0.58 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 4 55980310 55980310 C T KDR Missense_Mutation p.E261K 0.60 tolerated(0.09) benign(0.155) TCGA-D9-A6EC-06 4 56329936 56329936 G A CLOCK Missense_Mutation p.P159S 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 4 56832009 56832009 A G CEP135 Missense_Mutation p.E343G 0.32 deleterious(0) possibly_damaging(0.705) TCGA-D9-A6EC-06 4 57840106 57840106 T G NOA1 Missense_Mutation p.K409N 0.11 tolerated(0.37) benign(0.005) TCGA-D9-A6EC-06 4 5975406 5975406 G A C4orf50 Silent p.L604L 0.88 TCGA-D9-A6EC-06 4 60001 60001 G A ZNF595 Missense_Mutation p.E61K 0.08 tolerated_low_confidence(0.2) probably_damaging(0.996) TCGA-D9-A6EC-06 4 6058429 6058429 C T JAKMIP1 Missense_Mutation p.E568K 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-D9-A6EC-06 4 68938160 68938160 C T TMPRSS11F Missense_Mutation p.R132Q 0.22 tolerated(0.14) benign(0.104) TCGA-D9-A6EC-06 4 69097034 69097034 G A TMPRSS11B Silent p.S191S 0.42 TCGA-D9-A6EC-06 4 69343178 69343178 G A TMPRSS11E Missense_Mutation p.E267K 0.27 deleterious(0) possibly_damaging(0.707) TCGA-D9-A6EC-06 4 69535692 69535692 C T UGT2B15 Missense_Mutation p.M215I 0.58 tolerated(0.13) benign(0.072) TCGA-D9-A6EC-06 4 69796392 69796392 G A UGT2A3 Silent p.P392P 0.61 TCGA-D9-A6EC-06 4 70080095 70080095 G A UGT2B11 Silent p.L116L 0.44 TCGA-D9-A6EC-06 4 70146428 70146428 C T UGT2B28 Silent p.F70F 0.27 TCGA-D9-A6EC-06 4 70160550 70160550 G A UGT2B28 3'UTR 0.53 TCGA-D9-A6EC-06 4 70346465 70346465 C T UGT2B4 Missense_Mutation p.D492N 0.35 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 4 7043851 7043851 C T CCDC96 Missense_Mutation p.G272D 0.83 tolerated(0.15) benign(0.068) TCGA-D9-A6EC-06 4 7043852 7043852 C T CCDC96 Missense_Mutation p.G272S 0.84 tolerated(0.19) benign(0.085) TCGA-D9-A6EC-06 4 70513035 70513035 C T UGT2A1 Missense_Mutation p.E110K 0.33 tolerated(0.98) benign(0.012) TCGA-D9-A6EC-06 4 71024602 71024602 T C C4orf40 Silent p.S211S 0.18 TCGA-D9-A6EC-06 4 71232543 71232543 C T SMR3A Silent p.S79S 0.33 TCGA-D9-A6EC-06 4 71275739 71275739 A G PROL1 Missense_Mutation p.S232G 0.74 tolerated_low_confidence(0.1) unknown(0) TCGA-D9-A6EC-06 4 71347006 71347006 C T MUC7 Missense_Mutation p.S182F 0.27 deleterious(0) unknown(0) TCGA-D9-A6EC-06 4 71347140 71347140 T C MUC7 Missense_Mutation p.S227P 0.13 tolerated(0.28) unknown(0) TCGA-D9-A6EC-06 4 71508742 71508742 T G ENAM Silent p.T533T 0.38 TCGA-D9-A6EC-06 4 71509528 71509528 A C ENAM Missense_Mutation p.K795N 0.16 deleterious(0.03) benign(0.104) TCGA-D9-A6EC-06 4 73414495 73414495 C G ADAMTS3 Missense_Mutation p.R68S 0.24 tolerated(0.07) probably_damaging(0.993) TCGA-D9-A6EC-06 4 7435213 7435213 T C PSAPL1 Missense_Mutation p.K465R 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 4 74904240 74904240 C T CXCL3 Missense_Mutation p.R30Q 1.00 tolerated(0.28) benign(0.003) TCGA-D9-A6EC-06 4 75174248 75174248 G A EPGN 5'UTR 0.46 TCGA-D9-A6EC-06 4 75675848 75675848 C T BTC Silent p.V121V 0.58 TCGA-D9-A6EC-06 4 76785632 76785632 G A PPEF2 Silent p.L657L 0.72 TCGA-D9-A6EC-06 4 76805839 76805839 C T PPEF2 Silent p.E218E 0.66 TCGA-D9-A6EC-06 4 77055372 77055372 G A NUP54 Silent p.T222T 0.67 TCGA-D9-A6EC-06 4 77244476 77244476 C T CCDC158 Missense_Mutation p.D1082N 0.60 deleterious(0.03) probably_damaging(0.991) TCGA-D9-A6EC-06 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.28 tolerated(0.16) probably_damaging(0.975) TCGA-D9-A6EC-06 4 77661397 77661397 G A SHROOM3 Missense_Mutation p.G691S 0.61 tolerated(0.28) benign(0.007) TCGA-D9-A6EC-06 4 77661474 77661474 G A SHROOM3 Silent p.L716L 0.26 TCGA-D9-A6EC-06 4 77677636 77677636 G A SHROOM3 Missense_Mutation p.E1582K 0.45 deleterious(0.05) benign(0.437) TCGA-D9-A6EC-06 4 78081963 78081963 T C CCNG2 Silent p.T122T 0.08 TCGA-D9-A6EC-06 4 79366883 79366883 T C FRAS1 Intron 0.70 TCGA-D9-A6EC-06 4 80328484 80328484 G A GK2 Missense_Mutation p.R291C 0.62 tolerated(0.05) benign(0.009) TCGA-D9-A6EC-06 4 81188023 81188023 C T FGF5 Silent p.I15I 0.22 TCGA-D9-A6EC-06 4 8470197 8470197 G A TRMT44 Intron 0.89 TCGA-D9-A6EC-06 4 86491737 86491737 C T ARHGAP24 Nonsense_Mutation p.Q15* 0.64 TCGA-D9-A6EC-06 4 86938513 86938513 C T MAPK10 Silent p.V421V 0.59 TCGA-D9-A6EC-06 4 87024365 87024365 C T MAPK10 Silent p.Q133Q 0.28 TCGA-D9-A6EC-06 4 87705671 87705671 T G PTPN13 Silent p.T2031T 0.42 TCGA-D9-A6EC-06 4 87735639 87735639 C T PTPN13 Missense_Mutation p.L2470F 0.28 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 4 87770198 87770198 A T SLC10A6 Missense_Mutation p.L24Q 0.08 deleterious(0.05) possibly_damaging(0.627) TCGA-D9-A6EC-06 4 88055840 88055840 A C AFF1 Missense_Mutation p.N1177H 0.26 tolerated(0.1) unknown(0) TCGA-D9-A6EC-06 4 88243965 88243965 A C HSD17B13 Missense_Mutation p.L10R 0.28 deleterious(0.01) unknown(0) TCGA-D9-A6EC-06 4 88535068 88535068 A G DSPP Silent p.G418G 0.30 TCGA-D9-A6EC-06 4 88583344 88583344 G A DMP1 Silent p.E138E 0.27 TCGA-D9-A6EC-06 4 88584383 88584383 G A DMP1 Missense_Mutation p.E485K 0.30 deleterious(0.01) unknown(0) TCGA-D9-A6EC-06 4 88732584 88732584 G A IBSP Missense_Mutation p.G159E 0.26 tolerated(1) benign(0) TCGA-D9-A6EC-06 4 88767078 88767078 G A MEPE Missense_Mutation p.R353K 0.16 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 4 89183793 89183793 T C PPM1K Missense_Mutation p.N358S 0.21 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 4 90169268 90169268 T G GPRIN3 Missense_Mutation p.K665T 0.37 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 4 90816074 90816074 G A MMRN1 5'UTR 0.40 TCGA-D9-A6EC-06 4 90857790 90857790 G A MMRN1 Missense_Mutation p.D987N 0.60 tolerated(0.25) benign(0.008) TCGA-D9-A6EC-06 4 91549210 91549210 C T CCSER1 Nonsense_Mutation p.Q587* 0.39 TCGA-D9-A6EC-06 4 94693271 94693271 T G GRID2 Missense_Mutation p.N882K 0.63 deleterious(0.01) probably_damaging(0.937) TCGA-D9-A6EC-06 5 100147742 100147742 G A ST8SIA4 Silent p.L297L 0.45 TCGA-D9-A6EC-06 5 100238580 100238580 C T ST8SIA4 Missense_Mutation p.R27K 0.42 possibly_damaging(0.745) TCGA-D9-A6EC-06 5 101593680 101593680 C T SLCO4C1 Missense_Mutation p.G414R 0.33 deleterious(0) possibly_damaging(0.893) TCGA-D9-A6EC-06 5 101813489 101813489 G A SLCO6A1 Silent p.F231F 0.38 TCGA-D9-A6EC-06 5 101834386 101834386 G A SLCO6A1 Missense_Mutation p.P55S 0.47 tolerated(0.09) probably_damaging(0.996) TCGA-D9-A6EC-06 5 102612312 102612312 C T C5orf30 3'UTR 0.38 TCGA-D9-A6EC-06 5 1034362 1034362 G A NKD2 Missense_Mutation p.D115N 0.50 tolerated(0.05) possibly_damaging(0.795) TCGA-D9-A6EC-06 5 10973730 10973730 G A CTNND2 Silent p.F1171F 0.33 TCGA-D9-A6EC-06 5 110819754 110819754 C T CAMK4 Missense_Mutation p.R338C 0.44 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 5 112174893 112174893 C T APC Missense_Mutation p.S1201L 0.45 possibly_damaging(0.48) TCGA-D9-A6EC-06 5 112176283 112176283 C T APC Silent p.S1664S 0.45 TCGA-D9-A6EC-06 5 112200422 112200422 C T SRP19 Silent p.F98F 0.50 TCGA-D9-A6EC-06 5 112418637 112418637 G A MCC Silent p.F568F 0.46 TCGA-D9-A6EC-06 5 112458520 112458520 C T MCC Silent p.E296E 0.33 TCGA-D9-A6EC-06 5 112769665 112769665 G A TSSK1B Missense_Mutation p.S291F 0.55 deleterious(0) possibly_damaging(0.563) TCGA-D9-A6EC-06 5 112770359 112770359 C T TSSK1B Missense_Mutation p.E60K 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 115177142 115177142 A C ATG12 Silent p.S36S 0.29 TCGA-D9-A6EC-06 5 11565153 11565153 T G CTNND2 Silent p.R64R 0.15 TCGA-D9-A6EC-06 5 118500928 118500928 T A DMXL1 Silent p.I1641I 0.44 TCGA-D9-A6EC-06 5 121487821 121487821 G A ZNF474 Missense_Mutation p.E46K 0.37 tolerated(0.42) benign(0.018) TCGA-D9-A6EC-06 5 121780311 121780311 G A SNCAIP Silent p.K492K 0.37 TCGA-D9-A6EC-06 5 125816168 125816168 C T GRAMD3 Silent p.L216L 0.39 TCGA-D9-A6EC-06 5 126887407 126887407 T C PRRC1 Silent p.S379S 0.12 TCGA-D9-A6EC-06 5 127710419 127710419 C T FBN2 Missense_Mutation p.G666E 0.39 deleterious(0.04) probably_damaging(0.969) TCGA-D9-A6EC-06 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.24 TCGA-D9-A6EC-06 5 128320887 128320887 G A SLC27A6 Silent p.G181G 0.44 TCGA-D9-A6EC-06 5 128362958 128362958 G A SLC27A6 Missense_Mutation p.G463E 0.56 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 5 131409651 131409651 G A CSF2 Silent p.L45L 0.38 TCGA-D9-A6EC-06 5 131726461 131726461 C T SLC22A5 Missense_Mutation p.L378F 0.51 deleterious(0.04) possibly_damaging(0.739) TCGA-D9-A6EC-06 5 131729899 131729899 A C SLC22A5 Missense_Mutation p.S537R 0.23 tolerated(0.26) benign(0.003) TCGA-D9-A6EC-06 5 131915552 131915552 A G RAD50 Splice_Site p.X184_splice 0.19 TCGA-D9-A6EC-06 5 131976412 131976412 C T RAD50 Missense_Mutation p.L1223F 0.32 deleterious(0) probably_damaging(0.983) TCGA-D9-A6EC-06 5 132198079 132198079 A G GDF9 Silent p.T189T 0.44 TCGA-D9-A6EC-06 5 132342495 132342495 C T ZCCHC10 Silent p.K53K 0.35 TCGA-D9-A6EC-06 5 132534888 132534888 G A FSTL4 Nonsense_Mutation p.R810* 0.43 TCGA-D9-A6EC-06 5 133942528 133942528 A T SAR1B 3'UTR 0.29 TCGA-D9-A6EC-06 5 135229739 135229739 T C IL9 Silent p.S95S 0.73 TCGA-D9-A6EC-06 5 135651456 135651456 C T TRPC7 Silent p.R264R 0.50 TCGA-D9-A6EC-06 5 135651464 135651464 C T TRPC7 Missense_Mutation p.D262N 0.55 deleterious(0.05) benign(0.27) TCGA-D9-A6EC-06 5 135692973 135692973 C T TRPC7 Missense_Mutation p.E35K 0.46 tolerated(0.32) benign(0.018) TCGA-D9-A6EC-06 5 13701465 13701465 G A DNAH5 Silent p.F4473F 0.17 TCGA-D9-A6EC-06 5 13727622 13727622 G A DNAH5 Silent p.I4009I 0.21 TCGA-D9-A6EC-06 5 13727723 13727723 C T DNAH5 Missense_Mutation p.E3976K 0.61 possibly_damaging(0.621) TCGA-D9-A6EC-06 5 13727742 13727742 C T DNAH5 Nonsense_Mutation p.W3969* 0.29 TCGA-D9-A6EC-06 5 137321076 137321076 A T FAM13B Missense_Mutation p.I350N 0.32 tolerated(0.49) benign(0) TCGA-D9-A6EC-06 5 13737584 13737584 A T DNAH5 Silent p.T3744T 0.14 TCGA-D9-A6EC-06 5 137426537 137426537 G A WNT8A Silent p.Q277Q 0.48 TCGA-D9-A6EC-06 5 137427167 137427167 G A WNT8A 3'UTR 0.27 TCGA-D9-A6EC-06 5 137533959 137533959 G A CDC23 Missense_Mutation p.S314L 0.51 tolerated(0.25) benign(0.004) TCGA-D9-A6EC-06 5 137537132 137537132 G A CDC23 Silent p.L141L 0.36 TCGA-D9-A6EC-06 5 13762932 13762932 C T DNAH5 Missense_Mutation p.E3394K 0.55 possibly_damaging(0.635) TCGA-D9-A6EC-06 5 13766258 13766258 G A DNAH5 Missense_Mutation p.R3310C 0.50 benign(0.133) TCGA-D9-A6EC-06 5 137680657 137680657 C T FAM53C Nonsense_Mutation p.Q94* 0.38 TCGA-D9-A6EC-06 5 137681040 137681040 C T FAM53C Silent p.S221S 0.42 TCGA-D9-A6EC-06 5 13770902 13770902 G A DNAH5 Silent p.F3187F 0.26 TCGA-D9-A6EC-06 5 138378395 138378395 T C SIL1 Missense_Mutation p.T123A 0.45 tolerated(0.29) benign(0.004) TCGA-D9-A6EC-06 5 13841902 13841902 C T DNAH5 Missense_Mutation p.E1795K 0.54 possibly_damaging(0.621) TCGA-D9-A6EC-06 5 13845068 13845068 A C DNAH5 Missense_Mutation p.F1717V 0.14 benign(0.003) TCGA-D9-A6EC-06 5 13871682 13871682 G A DNAH5 Silent p.L1197L 0.60 TCGA-D9-A6EC-06 5 138773139 138773139 G A DNAJC18 Missense_Mutation p.S50F 0.41 deleterious(0.03) benign(0) TCGA-D9-A6EC-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.68 probably_damaging(0.931) TCGA-D9-A6EC-06 5 13900364 13900364 G A DNAH5 Missense_Mutation p.S737F 0.57 benign(0.046) TCGA-D9-A6EC-06 5 140059397 140059397 G A HARS Silent p.L124L 0.42 TCGA-D9-A6EC-06 5 140166795 140166795 A C PCDHA1 Missense_Mutation p.K307T 0.20 tolerated_low_confidence(0.46) benign(0.003) TCGA-D9-A6EC-06 5 140166991 140166991 C T PCDHA1 Silent p.I372I 0.48 TCGA-D9-A6EC-06 5 140174542 140174542 G A PCDHA2 5'Flank 0.37 TCGA-D9-A6EC-06 5 140175305 140175305 A G PCDHA2 Silent p.L252L 0.33 TCGA-D9-A6EC-06 5 140181451 140181451 T C PCDHA3 Silent p.T223T 0.30 TCGA-D9-A6EC-06 5 140181759 140181759 G A PCDHA3 Missense_Mutation p.G326E 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D9-A6EC-06 5 140183194 140183194 A G PCDHA3 Intron 0.25 TCGA-D9-A6EC-06 5 140202219 140202219 G A PCDHA5 Missense_Mutation p.D287N 0.31 tolerated_low_confidence(1) benign(0.008) TCGA-D9-A6EC-06 5 140202291 140202291 G A PCDHA5 Missense_Mutation p.D311N 0.52 deleterious_low_confidence(0.02) benign(0.027) TCGA-D9-A6EC-06 5 140203217 140203217 C T PCDHA5 Silent p.I619I 0.52 TCGA-D9-A6EC-06 5 140208058 140208058 G A PCDHA6 Missense_Mutation p.D128N 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D9-A6EC-06 5 140209068 140209068 G A PCDHA6 Silent p.V464V 0.44 TCGA-D9-A6EC-06 5 140209782 140209782 C T PCDHA6 Silent p.I702I 0.48 TCGA-D9-A6EC-06 5 140222201 140222201 C T PCDHA8 Missense_Mutation p.S432L 0.40 tolerated_low_confidence(0.06) benign(0.04) TCGA-D9-A6EC-06 5 140230163 140230163 G A PCDHA9 Missense_Mutation p.D695N 0.42 tolerated_low_confidence(0.12) benign(0.115) TCGA-D9-A6EC-06 5 140236546 140236546 G A PCDHA10 Missense_Mutation p.D305N 0.53 deleterious_low_confidence(0.02) benign(0.022) TCGA-D9-A6EC-06 5 140255384 140255384 C T PCDHA12 Silent p.I109I 0.42 TCGA-D9-A6EC-06 5 140256382 140256382 C T PCDHA12 Missense_Mutation p.S442F 0.44 deleterious_low_confidence(0.05) possibly_damaging(0.502) TCGA-D9-A6EC-06 5 140307540 140307540 C T PCDHAC1 Missense_Mutation p.P355S 0.45 tolerated(0.07) benign(0.098) TCGA-D9-A6EC-06 5 140432449 140432449 A C PCDHB1 Missense_Mutation p.N465T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 5 140432544 140432544 G A PCDHB1 Missense_Mutation p.G497R 0.50 tolerated(0.1) probably_damaging(1) TCGA-D9-A6EC-06 5 140474860 140474860 G A PCDHB2 Silent p.L162L 0.36 TCGA-D9-A6EC-06 5 140476755 140476755 G A PCDHB2 Missense_Mutation p.S794N 0.42 tolerated_low_confidence(0.17) benign(0.005) TCGA-D9-A6EC-06 5 140530708 140530708 C T PCDHB6 Silent p.F290F 0.43 TCGA-D9-A6EC-06 5 140531956 140531956 C T PCDHB6 Silent p.F706F 0.38 TCGA-D9-A6EC-06 5 140553242 140553242 G A PCDHB7 Missense_Mutation p.E276K 0.43 tolerated_low_confidence(0.24) benign(0.007) TCGA-D9-A6EC-06 5 140553810 140553810 G A PCDHB7 Missense_Mutation p.S465N 0.45 deleterious_low_confidence(0.02) benign(0.038) TCGA-D9-A6EC-06 5 140562590 140562590 C T PCDHB16 Silent p.F152F 0.27 TCGA-D9-A6EC-06 5 140580928 140580928 C T PCDHB11 Silent p.F527F 0.37 TCGA-D9-A6EC-06 5 140590551 140590551 T G PCDHB12 Missense_Mutation p.V691G 0.42 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D9-A6EC-06 5 140625809 140625809 C T PCDHB15 Silent p.P221P 0.40 TCGA-D9-A6EC-06 5 140740964 140740964 C T PCDHGB2 Missense_Mutation p.T421I 0.44 deleterious(0) possibly_damaging(0.901) TCGA-D9-A6EC-06 5 140744100 140744100 C T PCDHGA5 Missense_Mutation p.S68F 0.44 deleterious_low_confidence(0.01) benign(0.443) TCGA-D9-A6EC-06 5 140745836 140745836 G A PCDHGA5 Missense_Mutation p.E647K 0.40 tolerated_low_confidence(0.08) benign(0.013) TCGA-D9-A6EC-06 5 140752073 140752073 C T PCDHGB3 Silent p.L704L 0.45 TCGA-D9-A6EC-06 5 140755114 140755114 C T PCDHGA6 Silent p.S488S 0.46 TCGA-D9-A6EC-06 5 140802086 140802086 C T PCDHGA11 Missense_Mutation p.P431L 0.48 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-D9-A6EC-06 5 140810472 140810472 C T PCDHGA12 Missense_Mutation p.S49F 0.51 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-D9-A6EC-06 5 140870106 140870106 C T PCDHGC5 Silent p.S433S 0.45 TCGA-D9-A6EC-06 5 140870222 140870222 T G PCDHGC5 Missense_Mutation p.L472R 0.43 deleterious(0.02) possibly_damaging(0.884) TCGA-D9-A6EC-06 5 141035196 141035196 G A ARAP3 Nonsense_Mutation p.Q1368* 0.39 TCGA-D9-A6EC-06 5 141044630 141044630 C T ARAP3 Missense_Mutation p.G887S 0.28 tolerated(1) benign(0.011) TCGA-D9-A6EC-06 5 141244277 141244277 T C PCDH1 Missense_Mutation p.E540G 0.40 deleterious(0) possibly_damaging(0.562) TCGA-D9-A6EC-06 5 141318426 141318426 C T KIAA0141 3'UTR 0.30 TCGA-D9-A6EC-06 5 143586601 143586601 G A KCTD16 Silent p.R108R 0.38 TCGA-D9-A6EC-06 5 14482769 14482769 C T TRIO Missense_Mutation p.R2182C 0.15 benign(0.253) TCGA-D9-A6EC-06 5 14488207 14488207 C T TRIO Silent p.P2490P 0.30 TCGA-D9-A6EC-06 5 145969704 145969704 C T PPP2R2B Missense_Mutation p.E383K 0.42 tolerated(0.05) benign(0.097) TCGA-D9-A6EC-06 5 147020384 147020384 C T JAKMIP2 Silent p.R428R 0.47 TCGA-D9-A6EC-06 5 147029974 147029974 T C JAKMIP2 Missense_Mutation p.E255G 0.17 deleterious(0.03) benign(0.082) TCGA-D9-A6EC-06 5 147510860 147510860 G A SPINK5 Silent p.R1031R 0.42 TCGA-D9-A6EC-06 5 14751286 14751286 C T ANKH Silent p.P193P 0.15 TCGA-D9-A6EC-06 5 147516581 147516581 G A SPINK5 3'UTR 0.63 TCGA-D9-A6EC-06 5 147806819 147806819 C T FBXO38 Silent p.S654S 0.62 TCGA-D9-A6EC-06 5 148745555 148745555 T A PCYOX1L Missense_Mutation p.L174Q 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 149216113 149216113 C T PPARGC1B Nonsense_Mutation p.R699* 0.40 TCGA-D9-A6EC-06 5 149453039 149453039 A C CSF1R Missense_Mutation p.L303V 0.62 deleterious(0) possibly_damaging(0.607) TCGA-D9-A6EC-06 5 149585080 149585080 C G SLC6A7 Missense_Mutation p.P532R 0.46 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 5 149681697 149681697 C T ARSI Silent p.K80K 0.56 TCGA-D9-A6EC-06 5 149753849 149753849 C T TCOF1 Missense_Mutation p.S328F 0.56 tolerated(0.08) benign(0.005) TCGA-D9-A6EC-06 5 149776370 149776370 C T TCOF1 Missense_Mutation p.P1436L 0.38 deleterious(0.05) probably_damaging(0.997) TCGA-D9-A6EC-06 5 149792249 149792249 C T CD74 Missense_Mutation p.D22N 0.45 tolerated(0.1) possibly_damaging(0.873) TCGA-D9-A6EC-06 5 149931402 149931402 C A NDST1 Silent p.P838P 0.39 TCGA-D9-A6EC-06 5 150075217 150075217 T G RBM22 Missense_Mutation p.K199N 0.33 deleterious(0) probably_damaging(0.917) TCGA-D9-A6EC-06 5 150275837 150275837 C T ZNF300 Missense_Mutation p.E338K 0.37 tolerated(0.1) probably_damaging(0.996) TCGA-D9-A6EC-06 5 150722465 150722465 G A SLC36A2 Missense_Mutation p.H142Y 0.42 tolerated(0.26) probably_damaging(0.931) TCGA-D9-A6EC-06 5 150901482 150901482 G A FAT2 Nonsense_Mutation p.R3558* 0.41 TCGA-D9-A6EC-06 5 150901483 150901483 G A FAT2 Silent p.D3557D 0.43 TCGA-D9-A6EC-06 5 150911441 150911441 T G FAT2 Missense_Mutation p.K3173T 0.28 probably_damaging(0.935) TCGA-D9-A6EC-06 5 150922866 150922866 A G FAT2 Silent p.L2608L 0.46 TCGA-D9-A6EC-06 5 150924673 150924673 G A FAT2 Silent p.L2005L 0.57 TCGA-D9-A6EC-06 5 150947984 150947984 A G FAT2 Missense_Mutation p.V170A 0.11 possibly_damaging(0.863) TCGA-D9-A6EC-06 5 150948495 150948495 T C FAT2 5'UTR 0.19 TCGA-D9-A6EC-06 5 151239435 151239435 G A GLRA1 Silent p.A129A 0.23 TCGA-D9-A6EC-06 5 154190886 154190886 C T LARP1 Nonsense_Mutation p.Q898* 0.39 TCGA-D9-A6EC-06 5 154291320 154291320 T A GEMIN5 Missense_Mutation p.T712S 0.45 deleterious(0.01) benign(0.044) TCGA-D9-A6EC-06 5 154308188 154308188 C T GEMIN5 Silent p.K271K 0.50 TCGA-D9-A6EC-06 5 154393985 154393985 C T KIF4B Missense_Mutation p.S189F 0.51 deleterious(0.03) benign(0.155) TCGA-D9-A6EC-06 5 156565770 156565770 G A MED7 Silent p.L225L 0.38 TCGA-D9-A6EC-06 5 156641255 156641255 G A ITK Missense_Mutation p.D127N 0.49 tolerated(0.23) probably_damaging(0.969) TCGA-D9-A6EC-06 5 156921775 156921775 G A ADAM19 Silent p.F541F 0.45 TCGA-D9-A6EC-06 5 157065500 157065500 G A SOX30 Silent p.L540L 0.40 TCGA-D9-A6EC-06 5 157164914 157164914 A T THG1L Missense_Mutation p.K216M 0.26 deleterious(0) probably_damaging(0.985) TCGA-D9-A6EC-06 5 158140144 158140144 C T EBF1 Silent p.L401L 0.35 TCGA-D9-A6EC-06 5 158250197 158250197 A C EBF1 Silent p.S255S 0.73 TCGA-D9-A6EC-06 5 159462159 159462159 G A TTC1 Missense_Mutation p.E115K 0.39 tolerated(0.36) benign(0.023) TCGA-D9-A6EC-06 5 160753434 160753434 G A GABRB2 Missense_Mutation p.P378S 0.42 tolerated(0.19) benign(0.01) TCGA-D9-A6EC-06 5 161113264 161113264 G A GABRA6 Missense_Mutation p.V23I 0.35 tolerated_low_confidence(0.19) benign(0.001) TCGA-D9-A6EC-06 5 161113298 161113298 G A GABRA6 Missense_Mutation p.R34Q 0.50 tolerated(0.15) probably_damaging(0.997) TCGA-D9-A6EC-06 5 161524652 161524652 T C GABRG2 Silent p.T112T 0.23 TCGA-D9-A6EC-06 5 161580161 161580161 T C GABRG2 Silent p.L445L 0.46 TCGA-D9-A6EC-06 5 161580453 161580453 A T GABRG2 3'UTR 0.29 TCGA-D9-A6EC-06 5 162866326 162866326 G A CCNG1 Missense_Mutation p.E22K 0.37 tolerated(0.07) benign(0.073) TCGA-D9-A6EC-06 5 16453244 16453244 G A ZNF622 Missense_Mutation p.S395F 0.60 deleterious(0) probably_damaging(0.928) TCGA-D9-A6EC-06 5 168135060 168135060 G A SLIT3 Missense_Mutation p.S922F 0.46 deleterious(0) possibly_damaging(0.851) TCGA-D9-A6EC-06 5 168151452 168151452 C T SLIT3 Missense_Mutation p.E770K 0.53 deleterious(0.01) possibly_damaging(0.686) TCGA-D9-A6EC-06 5 168233478 168233478 G A SLIT3 Missense_Mutation p.A303V 0.51 tolerated(0.13) benign(0.034) TCGA-D9-A6EC-06 5 169423113 169423113 A G DOCK2 Missense_Mutation p.K1006R 0.24 tolerated(0.36) benign(0.005) TCGA-D9-A6EC-06 5 169532973 169532973 C T FOXI1 Silent p.F4F 0.42 TCGA-D9-A6EC-06 5 169535107 169535107 G A FOXI1 Missense_Mutation p.G210E 0.56 deleterious(0) possibly_damaging(0.886) TCGA-D9-A6EC-06 5 169535306 169535306 T G FOXI1 Silent p.P276P 0.30 TCGA-D9-A6EC-06 5 170238972 170238972 G A GABRP Missense_Mutation p.E345K 0.35 tolerated(0.31) benign(0.158) TCGA-D9-A6EC-06 5 171337701 171337701 C T FBXW11 Nonsense_Mutation p.W83* 0.33 TCGA-D9-A6EC-06 5 172581372 172581372 A C BNIP1 Missense_Mutation p.Q118H 0.33 tolerated(0.57) benign(0.019) TCGA-D9-A6EC-06 5 172590773 172590773 C T BNIP1 Missense_Mutation p.S222F 0.42 deleterious(0.01) possibly_damaging(0.891) TCGA-D9-A6EC-06 5 174869447 174869447 C T DRD1 Missense_Mutation p.R219K 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-D9-A6EC-06 5 175923636 175923636 A G FAF2 Missense_Mutation p.T271A 0.47 tolerated(0.78) benign(0.003) TCGA-D9-A6EC-06 5 175956539 175956539 T C RNF44 Missense_Mutation p.Q374R 0.49 tolerated(0.06) benign(0.017) TCGA-D9-A6EC-06 5 176026801 176026801 A G GPRIN1 Missense_Mutation p.L12P 0.41 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 5 176305606 176305606 G A UNC5A Missense_Mutation p.G717E 0.52 tolerated(0.44) probably_damaging(0.973) TCGA-D9-A6EC-06 5 176562927 176562927 A C NSD1 Missense_Mutation p.N275H 0.29 tolerated_low_confidence(0.06) benign(0.007) TCGA-D9-A6EC-06 5 176637326 176637326 T A NSD1 Silent p.S642S 0.22 TCGA-D9-A6EC-06 5 176943307 176943307 G A DDX41 Missense_Mutation p.L94F 0.34 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 5 176943308 176943308 G A DDX41 Silent p.H93H 0.32 TCGA-D9-A6EC-06 5 178369760 178369760 C T ZNF454 5'UTR 0.44 TCGA-D9-A6EC-06 5 178392062 178392062 A G ZNF454 Silent p.R219R 0.52 TCGA-D9-A6EC-06 5 178408731 178408731 C T GRM6 Missense_Mutation p.R854Q 0.44 deleterious(0.01) benign(0.065) TCGA-D9-A6EC-06 5 178417647 178417647 C T GRM6 Missense_Mutation p.E320K 0.31 deleterious(0.01) possibly_damaging(0.859) TCGA-D9-A6EC-06 5 178507032 178507032 C T ZNF354C Silent p.F533F 0.54 TCGA-D9-A6EC-06 5 178987046 178987046 G A RUFY1 Missense_Mutation p.E111K 0.33 tolerated(0.67) possibly_damaging(0.557) TCGA-D9-A6EC-06 5 179227054 179227054 G A MGAT4B Silent p.I285I 0.48 TCGA-D9-A6EC-06 5 179252196 179252196 G A SQSTM1 Missense_Mutation p.E242K 0.39 deleterious(0) probably_damaging(0.933) TCGA-D9-A6EC-06 5 179306125 179306125 G A TBC1D9B Missense_Mutation p.R497C 0.25 deleterious(0.04) probably_damaging(0.992) TCGA-D9-A6EC-06 5 180043419 180043419 A C FLT4 Missense_Mutation p.F1056C 0.19 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 5 180166674 180166674 G A OR2Y1 Missense_Mutation p.P129S 0.57 deleterious(0) possibly_damaging(0.601) TCGA-D9-A6EC-06 5 180335828 180335828 T C BTNL8 Missense_Mutation p.S98P 0.44 tolerated(0.08) probably_damaging(0.99) TCGA-D9-A6EC-06 5 180429693 180429693 C T BTNL3 Missense_Mutation p.P232L 0.95 deleterious(0) possibly_damaging(0.691) TCGA-D9-A6EC-06 5 1880930 1880930 C T IRX4 Missense_Mutation p.D106N 0.52 deleterious(0) benign(0.382) TCGA-D9-A6EC-06 5 23526445 23526445 C T PRDM9 Silent p.F416F 0.74 TCGA-D9-A6EC-06 5 24488047 24488047 G A CDH10 Missense_Mutation p.P698S 0.63 tolerated(0.52) probably_damaging(0.992) TCGA-D9-A6EC-06 5 24593540 24593540 G A CDH10 Silent p.C20C 0.23 TCGA-D9-A6EC-06 5 26886107 26886107 A G CDH9 Missense_Mutation p.L533P 0.21 tolerated(0.2) possibly_damaging(0.478) TCGA-D9-A6EC-06 5 26886187 26886187 A G CDH9 Silent p.I506I 0.09 TCGA-D9-A6EC-06 5 26903816 26903816 C T CDH9 Missense_Mutation p.G310E 0.74 tolerated(0.07) probably_damaging(1) TCGA-D9-A6EC-06 5 31267738 31267738 G A CDH6 Missense_Mutation p.R53K 0.71 deleterious(0) probably_damaging(0.931) TCGA-D9-A6EC-06 5 31297448 31297448 G A CDH6 Silent p.G192G 0.80 TCGA-D9-A6EC-06 5 31313488 31313488 G A CDH6 Silent p.S439S 0.14 TCGA-D9-A6EC-06 5 31318021 31318021 G A CDH6 Silent p.V624V 0.79 TCGA-D9-A6EC-06 5 32091181 32091181 G A PDZD2 Missense_Mutation p.G2543R 0.81 deleterious(0.04) benign(0.097) TCGA-D9-A6EC-06 5 32091182 32091182 G A PDZD2 Missense_Mutation p.G2543E 0.83 tolerated(0.15) benign(0.097) TCGA-D9-A6EC-06 5 32126499 32126499 A T GOLPH3 Missense_Mutation p.L239H 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 33463897 33463897 A C TARS Silent p.P658P 0.12 TCGA-D9-A6EC-06 5 33588885 33588885 G A ADAMTS12 Missense_Mutation p.S895L 0.79 deleterious(0) probably_damaging(0.99) TCGA-D9-A6EC-06 5 34033461 34033461 T G C1QTNF3 Missense_Mutation p.Q173P 0.13 tolerated(0.35) benign(0.284) TCGA-D9-A6EC-06 5 35010148 35010148 C T AGXT2 Missense_Mutation p.R432Q 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 35035355 35035355 A C AGXT2 Missense_Mutation p.S185A 0.09 deleterious(0) benign(0.217) TCGA-D9-A6EC-06 5 35065473 35065473 C T PRLR Silent p.E529E 0.19 TCGA-D9-A6EC-06 5 35065895 35065895 T G PRLR Missense_Mutation p.T389P 0.23 tolerated(0.09) benign(0.015) TCGA-D9-A6EC-06 5 35068327 35068327 A C PRLR Missense_Mutation p.H282Q 0.15 tolerated(0.4) benign(0.038) TCGA-D9-A6EC-06 5 35654729 35654729 C T SPEF2 Silent p.I293I 0.26 TCGA-D9-A6EC-06 5 35694453 35694453 G A SPEF2 Missense_Mutation p.E655K 0.46 tolerated(0.87) benign(0) TCGA-D9-A6EC-06 5 35705828 35705828 C T SPEF2 Silent p.I861I 0.73 TCGA-D9-A6EC-06 5 35792451 35792451 G A SPEF2 Missense_Mutation p.G1486E 0.24 tolerated(0.24) probably_damaging(0.999) TCGA-D9-A6EC-06 5 35860956 35860956 G A IL7R Missense_Mutation p.D29N 0.17 tolerated(0.06) possibly_damaging(0.904) TCGA-D9-A6EC-06 5 35873694 35873694 G A IL7R Nonsense_Mutation p.W217* 0.69 TCGA-D9-A6EC-06 5 35874636 35874636 G A IL7R Nonsense_Mutation p.W264* 0.20 TCGA-D9-A6EC-06 5 35876623 35876623 G A IL7R 3'UTR 0.78 TCGA-D9-A6EC-06 5 36036035 36036035 G A UGT3A2 Missense_Mutation p.S446F 0.62 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 5 36039677 36039677 C T UGT3A2 Missense_Mutation p.G326E 0.69 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 5 36105272 36105272 T C LMBRD2 Missense_Mutation p.N642S 0.06 tolerated(0.83) benign(0.003) TCGA-D9-A6EC-06 5 36184041 36184041 T G SKP2 3'UTR 0.08 TCGA-D9-A6EC-06 5 37167299 37167299 A C C5orf42 Missense_Mutation p.L2417R 0.27 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 5 37350281 37350281 T C NUP155 Silent p.Q270Q 0.57 TCGA-D9-A6EC-06 5 38481818 38481818 C T LIFR Missense_Mutation p.G1058E 0.77 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 38885471 38885471 G A OSMR Missense_Mutation p.D242N 0.17 tolerated(0.76) benign(0.01) TCGA-D9-A6EC-06 5 38885522 38885522 C T OSMR Missense_Mutation p.P259S 0.18 tolerated(0.07) probably_damaging(0.947) TCGA-D9-A6EC-06 5 38921755 38921755 G A OSMR Missense_Mutation p.G542R 0.14 deleterious(0.05) benign(0.367) TCGA-D9-A6EC-06 5 38945127 38945127 G A RICTOR Silent p.I1559I 0.78 TCGA-D9-A6EC-06 5 40762832 40762832 T G PRKAA1 3'Flank 0.19 TCGA-D9-A6EC-06 5 40843572 40843572 A G CARD6 Missense_Mutation p.E201G 0.15 deleterious(0) possibly_damaging(0.804) TCGA-D9-A6EC-06 5 41038933 41038933 C T MROH2B Missense_Mutation p.A707T 0.77 tolerated(0.38) benign(0.062) TCGA-D9-A6EC-06 5 41057250 41057250 C T MROH2B Missense_Mutation p.E294K 0.15 tolerated(0.32) benign(0.052) TCGA-D9-A6EC-06 5 41143058 41143058 C T C6 Missense_Mutation p.G892R 0.14 tolerated(0.15) possibly_damaging(0.494) TCGA-D9-A6EC-06 5 41149408 41149408 G A C6 Missense_Mutation p.S853L 0.20 deleterious(0) possibly_damaging(0.548) TCGA-D9-A6EC-06 5 41172439 41172439 C T C6 Silent p.E393E 0.80 TCGA-D9-A6EC-06 5 41176636 41176636 G A C6 Missense_Mutation p.S370F 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 5 41382073 41382073 C T PLCXD3 Missense_Mutation p.E223K 0.16 tolerated(0.77) benign(0.031) TCGA-D9-A6EC-06 5 42689003 42689003 G A GHR Missense_Mutation p.E50K 0.12 tolerated(1) benign(0) TCGA-D9-A6EC-06 5 42718660 42718660 G A GHR Missense_Mutation p.D351N 0.15 deleterious(0.01) probably_damaging(0.925) TCGA-D9-A6EC-06 5 42719368 42719368 G T GHR Missense_Mutation p.G587C 0.16 deleterious(0.01) possibly_damaging(0.895) TCGA-D9-A6EC-06 5 43292654 43292654 A C HMGCS1 Silent p.T465T 0.18 TCGA-D9-A6EC-06 5 43292734 43292734 A G HMGCS1 Missense_Mutation p.Y439H 0.15 tolerated(0.11) benign(0.293) TCGA-D9-A6EC-06 5 43533857 43533857 A G PAIP1 Missense_Mutation p.F412S 0.18 deleterious(0) possibly_damaging(0.892) TCGA-D9-A6EC-06 5 49698146 49698146 C T EMB Silent p.G295G 0.41 TCGA-D9-A6EC-06 5 50090869 50090869 G A PARP8 Missense_Mutation p.R349K 0.69 tolerated_low_confidence(0.18) benign(0.008) TCGA-D9-A6EC-06 5 50687198 50687198 A C ISL1 Missense_Mutation p.S286R 0.10 tolerated(0.07) benign(0.239) TCGA-D9-A6EC-06 5 52204843 52204843 G A ITGA1 Missense_Mutation p.G524E 0.38 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 5 54281073 54281073 A G ESM1 Silent p.P91P 0.25 TCGA-D9-A6EC-06 5 54528360 54528360 G A CCNO Silent p.S132S 0.57 TCGA-D9-A6EC-06 5 5457771 5457771 C T KIAA0947 Missense_Mutation p.P340S 0.33 deleterious(0.01) possibly_damaging(0.728) TCGA-D9-A6EC-06 5 55178873 55178873 G A IL31RA Silent p.A152A 0.57 TCGA-D9-A6EC-06 5 55272108 55272108 T G IL6ST 5'UTR 0.24 TCGA-D9-A6EC-06 5 55472048 55472048 C T ANKRD55 Silent p.L81L 0.38 TCGA-D9-A6EC-06 5 61745786 61745786 G T IPO11 Missense_Mutation p.R131L 0.41 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 5 624595 624595 C T CEP72 Missense_Mutation p.P138L 0.29 tolerated(0.18) benign(0.113) TCGA-D9-A6EC-06 5 63256868 63256868 G A HTR1A Missense_Mutation p.R227C 0.44 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 5 63905131 63905131 C T RGS7BP 3'UTR 0.43 TCGA-D9-A6EC-06 5 65008883 65008883 G A SGTB Nonsense_Mutation p.Q37* 0.38 TCGA-D9-A6EC-06 5 65349462 65349462 T C ERBB2IP Silent p.T772T 0.41 TCGA-D9-A6EC-06 5 678122 678122 G A TPPP Silent p.S18S 0.17 TCGA-D9-A6EC-06 5 70307141 70307141 C T NAIP Missense_Mutation p.G210E 0.65 tolerated(0.14) possibly_damaging(0.591) TCGA-D9-A6EC-06 5 71752264 71752264 G A ZNF366 Silent p.I497I 0.44 TCGA-D9-A6EC-06 5 71757110 71757110 C T ZNF366 Missense_Mutation p.E72K 0.41 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D9-A6EC-06 5 72348220 72348220 G A FCHO2 Silent p.K353K 0.33 TCGA-D9-A6EC-06 5 74721318 74721318 G A COL4A3BP Missense_Mutation p.H283Y 0.44 tolerated(0.26) benign(0.011) TCGA-D9-A6EC-06 5 74889754 74889754 C T POLK Missense_Mutation p.R470C 0.54 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 75914275 75914275 C T F2RL2 Missense_Mutation p.G86E 0.39 tolerated(1) benign(0.002) TCGA-D9-A6EC-06 5 75932988 75932988 G A IQGAP2 Missense_Mutation p.G637E 0.37 tolerated(0.63) benign(0.002) TCGA-D9-A6EC-06 5 76029137 76029137 A C F2R Missense_Mutation p.S363R 0.40 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 5 76029165 76029165 A G F2R Missense_Mutation p.Y372C 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 76649193 76649193 C T PDE8B Missense_Mutation p.L377F 0.28 deleterious(0.01) benign(0.038) TCGA-D9-A6EC-06 5 76736817 76736817 T C WDR41 Missense_Mutation p.S235G 0.29 tolerated(0.33) benign(0) TCGA-D9-A6EC-06 5 7804738 7804738 A C ADCY2 Missense_Mutation p.K939T 0.26 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 5 7804747 7804747 G C ADCY2 Missense_Mutation p.G942A 0.26 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 5 78076388 78076388 A C ARSB Missense_Mutation p.D478E 0.29 tolerated(0.78) benign(0.001) TCGA-D9-A6EC-06 5 78325737 78325737 G A DMGDH Missense_Mutation p.H602Y 0.27 deleterious(0.02) possibly_damaging(0.794) TCGA-D9-A6EC-06 5 7893021 7893021 C T MTRR Missense_Mutation p.P545S 0.21 tolerated(0.19) benign(0.346) TCGA-D9-A6EC-06 5 79031093 79031093 G A CMYA5 Missense_Mutation p.E2169K 0.49 possibly_damaging(0.677) TCGA-D9-A6EC-06 5 79031460 79031460 A C CMYA5 Missense_Mutation p.K2291T 0.47 probably_damaging(0.981) TCGA-D9-A6EC-06 5 79031895 79031895 C T CMYA5 Missense_Mutation p.P2436L 0.35 benign(0.227) TCGA-D9-A6EC-06 5 79033624 79033624 A C CMYA5 Missense_Mutation p.K3012N 0.21 benign(0.001) TCGA-D9-A6EC-06 5 79355697 79355697 G A THBS4 Missense_Mutation p.G319E 0.38 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 5 79498771 79498771 G A SERINC5 Silent p.F43F 0.15 TCGA-D9-A6EC-06 5 79855807 79855807 C T ANKRD34B Missense_Mutation p.G11E 0.71 deleterious(0) benign(0.128) TCGA-D9-A6EC-06 5 79929780 79929780 A G DHFR Missense_Mutation p.L134P 0.52 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 5 79974808 79974808 A G MSH3 Silent p.S412S 0.09 TCGA-D9-A6EC-06 5 80641772 80641772 G A ACOT12 Silent p.F235F 0.44 TCGA-D9-A6EC-06 5 82373195 82373195 G A TMEM167A 5'UTR 0.46 TCGA-D9-A6EC-06 5 82808128 82808128 C T VCAN Silent p.L319L 0.45 TCGA-D9-A6EC-06 5 865681 865681 T C BRD9 Missense_Mutation p.E514G 0.12 tolerated(0.13) possibly_damaging(0.484) TCGA-D9-A6EC-06 5 876270 876270 G A BRD9 Silent p.L443L 0.59 TCGA-D9-A6EC-06 5 89940642 89940642 C T GPR98 Nonsense_Mutation p.Q952* 0.45 TCGA-D9-A6EC-06 5 89948257 89948257 G A GPR98 Missense_Mutation p.E1171K 0.40 possibly_damaging(0.636) TCGA-D9-A6EC-06 5 89949051 89949051 G A GPR98 Silent p.Q1220Q 0.30 TCGA-D9-A6EC-06 5 89975415 89975415 G A GPR98 Missense_Mutation p.M1831I 0.52 benign(0.11) TCGA-D9-A6EC-06 5 90052277 90052277 C T GPR98 Missense_Mutation p.L3863F 0.39 benign(0.009) TCGA-D9-A6EC-06 5 93077037 93077037 G A POU5F2 Missense_Mutation p.P78L 0.40 tolerated(0.23) possibly_damaging(0.713) TCGA-D9-A6EC-06 5 94134742 94134742 C T MCTP1 Silent p.G844G 0.32 TCGA-D9-A6EC-06 5 94991874 94991874 C T RFESD Missense_Mutation p.S165F 0.51 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 5 95124505 95124505 T G RHOBTB3 Missense_Mutation p.F555V 0.40 deleterious(0) probably_damaging(0.98) TCGA-D9-A6EC-06 5 98208121 98208121 T C CHD1 Missense_Mutation p.Q1237R 0.36 tolerated(0.57) benign(0) TCGA-D9-A6EC-06 6 100390825 100390825 C T MCHR2 Nonsense_Mutation p.W196* 0.60 TCGA-D9-A6EC-06 6 102307279 102307279 G A GRIK2 Missense_Mutation p.E479K 0.97 tolerated(0.44) possibly_damaging(0.714) TCGA-D9-A6EC-06 6 102511889 102511889 C T GRIK2 Intron 0.88 TCGA-D9-A6EC-06 6 106547271 106547271 G A PRDM1 Missense_Mutation p.E170K 0.91 deleterious(0) possibly_damaging(0.585) TCGA-D9-A6EC-06 6 10730950 10730950 T C TMEM14C 3'UTR 0.59 TCGA-D9-A6EC-06 6 10792002 10792002 C T MAK Missense_Mutation p.E408K 0.55 tolerated(0.06) benign(0.009) TCGA-D9-A6EC-06 6 108193032 108193032 T G SEC63 Missense_Mutation p.K720T 0.29 tolerated(0.11) probably_damaging(0.917) TCGA-D9-A6EC-06 6 108243080 108243080 G A SEC63 Missense_Mutation p.R125C 0.89 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 6 108370531 108370531 A C OSTM1 Missense_Mutation p.I292S 0.09 deleterious(0) possibly_damaging(0.871) TCGA-D9-A6EC-06 6 10955434 10955434 A C SYCP2L Missense_Mutation p.E680D 0.19 tolerated(0.24) benign(0.215) TCGA-D9-A6EC-06 6 109954280 109954280 G A AK9 Missense_Mutation p.S367L 0.75 deleterious(0) probably_damaging(0.936) TCGA-D9-A6EC-06 6 110300567 110300567 A G GPR6 Silent p.T84T 0.28 TCGA-D9-A6EC-06 6 110644065 110644065 C T METTL24 Nonsense_Mutation p.W110* 0.96 TCGA-D9-A6EC-06 6 110729535 110729535 A G DDO Splice_Site p.X122_splice 0.22 TCGA-D9-A6EC-06 6 110734570 110734570 G A DDO Silent p.T60T 0.43 TCGA-D9-A6EC-06 6 111196329 111196329 C T AMD1 Silent p.F7F 1.00 TCGA-D9-A6EC-06 6 111695344 111695344 T G REV3L Missense_Mutation p.N1405T 0.29 tolerated_low_confidence(0.18) benign(0.031) TCGA-D9-A6EC-06 6 111697073 111697073 G A REV3L Missense_Mutation p.R829W 0.85 deleterious(0.02) benign(0.014) TCGA-D9-A6EC-06 6 111701243 111701243 T C REV3L Missense_Mutation p.S466G 0.13 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 6 112493822 112493822 C T LAMA4 Silent p.R514R 0.34 TCGA-D9-A6EC-06 6 114277844 114277844 T G HDAC2 Missense_Mutation p.E99D 0.38 tolerated(0.46) benign(0.006) TCGA-D9-A6EC-06 6 116277703 116277703 G A FRK Silent p.I290I 0.90 TCGA-D9-A6EC-06 6 116288791 116288791 C T FRK Missense_Mutation p.G241E 0.97 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 117127758 117127758 A G GPRC6A Silent p.T370T 0.50 TCGA-D9-A6EC-06 6 11723677 11723677 A C ADTRP Missense_Mutation p.L206R 0.16 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 6 117609735 117609735 C T ROS1 Missense_Mutation p.A2322T 0.97 deleterious_low_confidence(0.04) benign(0.181) TCGA-D9-A6EC-06 6 117609818 117609818 G A ROS1 Missense_Mutation p.S2294F 0.84 tolerated_low_confidence(0.14) benign(0.004) TCGA-D9-A6EC-06 6 117632191 117632191 G A ROS1 Silent p.F2075F 0.96 TCGA-D9-A6EC-06 6 117663617 117663617 G A ROS1 Missense_Mutation p.P1539S 0.70 tolerated(0.83) benign(0.004) TCGA-D9-A6EC-06 6 117890924 117890924 T G DCBLD1 3'UTR 0.38 TCGA-D9-A6EC-06 6 117892106 117892106 G T GOPC Missense_Mutation p.L277I 0.85 tolerated(0.2) benign(0.17) TCGA-D9-A6EC-06 6 118588242 118588242 G A SLC35F1 Missense_Mutation p.G188S 0.93 tolerated(0.06) possibly_damaging(0.899) TCGA-D9-A6EC-06 6 119341252 119341252 G A FAM184A Missense_Mutation p.S408L 0.88 tolerated(0.08) benign(0.013) TCGA-D9-A6EC-06 6 12123113 12123113 A C HIVEP1 Silent p.R1029R 0.22 TCGA-D9-A6EC-06 6 12163898 12163898 C T HIVEP1 Missense_Mutation p.P2454L 0.49 deleterious(0) possibly_damaging(0.616) TCGA-D9-A6EC-06 6 121768880 121768880 C T GJA1 Missense_Mutation p.S296F 0.51 tolerated(0.73) possibly_damaging(0.903) TCGA-D9-A6EC-06 6 123332191 123332191 C T CLVS2 Missense_Mutation p.P151S 0.83 tolerated(0.16) benign(0.232) TCGA-D9-A6EC-06 6 123332296 123332296 G A CLVS2 Missense_Mutation p.G186S 0.90 tolerated(0.08) probably_damaging(0.911) TCGA-D9-A6EC-06 6 123377163 123377163 C T CLVS2 Silent p.S296S 0.92 TCGA-D9-A6EC-06 6 126073211 126073211 T G HEY2 Missense_Mutation p.L74R 0.37 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 6 129419329 129419329 C T LAMA2 Silent p.I136I 1.00 TCGA-D9-A6EC-06 6 129634186 129634186 G A LAMA2 Missense_Mutation p.D1119N 0.91 tolerated(0.18) benign(0.12) TCGA-D9-A6EC-06 6 129781440 129781440 A G LAMA2 Silent p.K2321K 0.50 TCGA-D9-A6EC-06 6 129959588 129959588 A C ARHGAP18 Missense_Mutation p.I168S 0.27 deleterious(0) benign(0.421) TCGA-D9-A6EC-06 6 13053636 13053636 C T PHACTR1 Missense_Mutation p.S97F 0.44 tolerated(0.22) possibly_damaging(0.683) TCGA-D9-A6EC-06 6 130762012 130762012 G A TMEM200A Missense_Mutation p.E149K 0.91 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 6 13283704 13283704 C T TBC1D7 Intron 0.40 TCGA-D9-A6EC-06 6 133783817 133783817 C T EYA4 Silent p.S213S 0.89 TCGA-D9-A6EC-06 6 135360775 135360775 T G HBS1L Missense_Mutation p.Q122H 0.40 deleterious(0.03) possibly_damaging(0.701) TCGA-D9-A6EC-06 6 136494956 136494956 C T PDE7B Missense_Mutation p.H245Y 0.86 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 136597156 136597156 C T BCLAF1 Missense_Mutation p.E503K 0.36 tolerated(0.1) possibly_damaging(0.486) TCGA-D9-A6EC-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-D9-A6EC-06 6 136687015 136687015 T G MAP7 Missense_Mutation p.K399N 0.35 deleterious(0.04) possibly_damaging(0.549) TCGA-D9-A6EC-06 6 137477930 137477930 A C IL22RA2 Missense_Mutation p.S87A 0.10 tolerated_low_confidence(0.45) benign(0) TCGA-D9-A6EC-06 6 138635060 138635060 T G KIAA1244 Missense_Mutation p.D1443E 0.33 tolerated(0.98) benign(0.005) TCGA-D9-A6EC-06 6 143074818 143074818 G A HIVEP2 Missense_Mutation p.P2256L 0.82 deleterious(0.02) benign(0.097) TCGA-D9-A6EC-06 6 143090869 143090869 A C HIVEP2 Silent p.V1669V 0.07 TCGA-D9-A6EC-06 6 143093047 143093047 T A HIVEP2 Silent p.R943R 0.30 TCGA-D9-A6EC-06 6 149922826 149922826 T C KATNA1 Silent p.T264T 0.45 TCGA-D9-A6EC-06 6 150719390 150719390 G A IYD 3'UTR 0.97 TCGA-D9-A6EC-06 6 151413640 151413640 T G MTHFD1L Missense_Mutation p.F962C 0.08 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 6 151894335 151894335 A G CCDC170 Silent p.K267K 0.38 TCGA-D9-A6EC-06 6 151894410 151894410 G A CCDC170 Silent p.K292K 0.53 TCGA-D9-A6EC-06 6 152675941 152675941 G A SYNE1 Silent p.F3593F 0.90 TCGA-D9-A6EC-06 6 152712494 152712494 T G SYNE1 Missense_Mutation p.K2641T 0.25 possibly_damaging(0.806) TCGA-D9-A6EC-06 6 155126596 155126596 C T SCAF8 Silent p.L319L 0.94 TCGA-D9-A6EC-06 6 15513227 15513227 G A JARID2 Missense_Mutation p.E1073K 0.39 tolerated(0.32) benign(0.231) TCGA-D9-A6EC-06 6 158317991 158317991 G A SNX9 Missense_Mutation p.D145N 0.51 tolerated(0.53) possibly_damaging(0.579) TCGA-D9-A6EC-06 6 158516960 158516960 A G SYNJ2 Missense_Mutation p.N1352S 0.29 tolerated_low_confidence(0.64) benign(0.004) TCGA-D9-A6EC-06 6 158540165 158540165 G C SERAC1 Missense_Mutation p.L402V 0.23 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 158923532 158923532 T A TULP4 Missense_Mutation p.L946Q 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 159146558 159146558 G A SYTL3 Silent p.L248L 0.89 TCGA-D9-A6EC-06 6 159653263 159653263 C T FNDC1 Silent p.G573G 1.00 TCGA-D9-A6EC-06 6 159657285 159657285 C T FNDC1 Missense_Mutation p.P1336S 0.96 tolerated(0.25) unknown(0) TCGA-D9-A6EC-06 6 160664671 160664671 A C SLC22A2 Silent p.R404R 0.44 TCGA-D9-A6EC-06 6 160999688 160999688 A C LPA Silent p.P1446P 0.19 TCGA-D9-A6EC-06 6 161470210 161470210 A G MAP3K4 Silent p.K302K 0.46 TCGA-D9-A6EC-06 6 16327208 16327208 G A ATXN1 Missense_Mutation p.P445L 0.33 deleterious(0) possibly_damaging(0.877) TCGA-D9-A6EC-06 6 168440778 168440778 C T KIF25 Silent p.L176L 0.95 TCGA-D9-A6EC-06 6 17637899 17637899 A C NUP153 Missense_Mutation p.I650S 0.05 tolerated(0.45) benign(0.001) TCGA-D9-A6EC-06 6 17764557 17764557 A C KIF13A Silent p.S1734S 0.19 TCGA-D9-A6EC-06 6 18197822 18197822 C T KDM1B Missense_Mutation p.S252L 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-D9-A6EC-06 6 24412565 24412565 T A MRS2 Missense_Mutation p.L177H 0.24 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 24475399 24475399 T G GPLD1 Missense_Mutation p.S131R 0.17 deleterious(0) possibly_damaging(0.762) TCGA-D9-A6EC-06 6 24581180 24581180 C T KIAA0319 Missense_Mutation p.G418E 0.46 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 25917313 25917313 T A SLC17A2 Missense_Mutation p.S218C 0.17 deleterious(0.03) possibly_damaging(0.749) TCGA-D9-A6EC-06 6 26093376 26093376 G A HFE Missense_Mutation p.G308R 0.50 deleterious(0.03) probably_damaging(0.972) TCGA-D9-A6EC-06 6 26217579 26217579 A C HIST1H2AE Missense_Mutation p.K126T 0.13 deleterious_low_confidence(0.04) benign(0.037) TCGA-D9-A6EC-06 6 26452456 26452456 T C BTN3A3 Silent p.P524P 0.22 TCGA-D9-A6EC-06 6 26598211 26598211 A G ABT1 Missense_Mutation p.D104G 0.08 tolerated(0.09) benign(0.031) TCGA-D9-A6EC-06 6 27806651 27806651 T C HIST1H2BN Missense_Mutation p.F71S 0.50 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D9-A6EC-06 6 28056743 28056743 A C ZNF165 Missense_Mutation p.K318T 0.20 deleterious(0) benign(0.276) TCGA-D9-A6EC-06 6 28227745 28227745 G A NKAPL Missense_Mutation p.R199K 0.17 tolerated(0.55) unknown(0) TCGA-D9-A6EC-06 6 2838129 2838129 T G SERPINB1 Missense_Mutation p.K137N 0.49 deleterious(0.03) possibly_damaging(0.727) TCGA-D9-A6EC-06 6 28472176 28472176 G A GPX6 Silent p.L187L 0.41 TCGA-D9-A6EC-06 6 28483555 28483555 G A GPX6 5'UTR 0.39 TCGA-D9-A6EC-06 6 28554171 28554171 G A SCAND3 Silent p.L108L 0.51 TCGA-D9-A6EC-06 6 29012610 29012610 G A OR2W1 Silent p.L115L 0.52 TCGA-D9-A6EC-06 6 29079989 29079989 C A OR2J3 Missense_Mutation p.L108I 0.47 deleterious(0.01) probably_damaging(0.926) TCGA-D9-A6EC-06 6 29274660 29274660 C T OR14J1 Missense_Mutation p.S65F 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 29274869 29274869 G A OR14J1 Missense_Mutation p.D135N 0.43 tolerated(1) benign(0.003) TCGA-D9-A6EC-06 6 29323222 29323222 A T OR5V1 Missense_Mutation p.F251I 0.22 deleterious(0) benign(0.428) TCGA-D9-A6EC-06 6 29342748 29342748 C T OR12D3 Missense_Mutation p.G106E 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-D9-A6EC-06 6 29364962 29364962 T C OR12D2 Silent p.S162S 0.06 TCGA-D9-A6EC-06 6 29408332 29408332 C T OR10C1 Silent p.I180I 0.42 TCGA-D9-A6EC-06 6 29455244 29455244 G A MAS1L Missense_Mutation p.P146S 0.44 tolerated(0.29) benign(0.005) TCGA-D9-A6EC-06 6 29640614 29640614 G A ZFP57 Missense_Mutation p.S425F 0.45 tolerated(0.09) benign(0.414) TCGA-D9-A6EC-06 6 29974580 29974580 C T ZNRD1-AS1 Intron 0.50 TCGA-D9-A6EC-06 6 30115558 30115558 A C TRIM40 Missense_Mutation p.E220A 0.14 tolerated(0.15) benign(0.039) TCGA-D9-A6EC-06 6 30134986 30134986 A C TRIM15 Missense_Mutation p.T139P 0.42 tolerated(0.17) benign(0.054) TCGA-D9-A6EC-06 6 30522672 30522672 G A GNL1 Missense_Mutation p.P133S 0.37 deleterious(0.03) probably_damaging(0.977) TCGA-D9-A6EC-06 6 30653522 30653522 G A PPP1R18 Missense_Mutation p.R92W 0.23 deleterious(0) probably_damaging(0.938) TCGA-D9-A6EC-06 6 30680859 30680859 A G MDC1 Missense_Mutation p.V287A 0.09 tolerated(0.47) benign(0.001) TCGA-D9-A6EC-06 6 30708043 30708043 A G FLOT1 Silent p.S205S 0.25 TCGA-D9-A6EC-06 6 30709057 30709057 G A FLOT1 Silent p.F88F 0.45 TCGA-D9-A6EC-06 6 30867881 30867881 A G DDR1 3'UTR 0.07 TCGA-D9-A6EC-06 6 30883809 30883809 A C VARS2 Silent p.A216A 0.16 TCGA-D9-A6EC-06 6 30955270 30955270 T C MUC21 Missense_Mutation p.S440P 0.24 tolerated(0.11) unknown(0) TCGA-D9-A6EC-06 6 31084284 31084284 G A CDSN Nonsense_Mutation p.Q370* 0.42 TCGA-D9-A6EC-06 6 31499077 31499077 C T DDX39B Missense_Mutation p.E325K 0.55 deleterious(0.02) benign(0.086) TCGA-D9-A6EC-06 6 31508228 31508228 C T DDX39B Missense_Mutation p.E28K 0.41 tolerated(0.64) benign(0.001) TCGA-D9-A6EC-06 6 31549336 31549336 C T LTB Missense_Mutation p.G94S 0.41 deleterious(0.04) probably_damaging(0.922) TCGA-D9-A6EC-06 6 31600170 31600170 C T PRRC2A Silent p.P1240P 0.44 TCGA-D9-A6EC-06 6 31608000 31608000 A G BAG6 Silent p.S1044S 0.27 TCGA-D9-A6EC-06 6 31627330 31627330 G A C6orf47 Missense_Mutation p.P132L 0.44 tolerated_low_confidence(0.39) benign(0.009) TCGA-D9-A6EC-06 6 31656812 31656812 T G ABHD16A Missense_Mutation p.K389T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 6 31675466 31675466 G A LY6G6F Missense_Mutation p.G95E 0.36 tolerated(0.24) benign(0.001) TCGA-D9-A6EC-06 6 31691601 31691601 C T C6orf25 Missense_Mutation p.R83C 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A6EC-06 6 31691727 31691727 G C C6orf25 Missense_Mutation p.D125H 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-D9-A6EC-06 6 31701616 31701616 G A CLIC1 Missense_Mutation p.P91L 0.47 deleterious(0) benign(0.332) TCGA-D9-A6EC-06 6 31701617 31701617 G A CLIC1 Missense_Mutation p.P91S 0.48 deleterious(0.02) benign(0.008) TCGA-D9-A6EC-06 6 31725831 31725831 C T MSH5 Intron 0.29 TCGA-D9-A6EC-06 6 31727199 31727199 C T MSH5 Intron 0.38 TCGA-D9-A6EC-06 6 31777908 31777908 T G HSPA1L Missense_Mutation p.Q614H 0.08 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 6 31778352 31778352 G A HSPA1L Silent p.I466I 0.52 TCGA-D9-A6EC-06 6 31914294 31914294 C T CFB Missense_Mutation p.P572L 0.40 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 6 31937788 31937788 A C DXO Missense_Mutation p.F353V 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 6 31940093 31940093 G A STK19 Missense_Mutation p.E79K 0.41 deleterious_low_confidence(0.02) benign(0.004) TCGA-D9-A6EC-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.47 tolerated_low_confidence(0.07) benign(0.108) TCGA-D9-A6EC-06 6 31996262 31996262 G A C4B Silent p.K1061K 0.51 TCGA-D9-A6EC-06 6 32017319 32017319 T C TNXB 5'Flank 0.15 TCGA-D9-A6EC-06 6 32039764 32039764 C T TNXB Intron 0.59 TCGA-D9-A6EC-06 6 32049991 32049991 A G RNA5SP206 5'Flank 0.10 TCGA-D9-A6EC-06 6 32097093 32097093 A C FKBPL Silent p.T155T 0.17 TCGA-D9-A6EC-06 6 32151816 32151816 A C RNF5 3'Flank 0.22 TCGA-D9-A6EC-06 6 32169024 32169024 C T NOTCH4 Missense_Mutation p.D1337N 0.52 tolerated(0.34) benign(0.004) TCGA-D9-A6EC-06 6 32188285 32188285 A C NOTCH4 Missense_Mutation p.C352W 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 32260841 32260841 C T C6orf10 Missense_Mutation p.E537K 0.44 tolerated_low_confidence(0.18) probably_damaging(0.981) TCGA-D9-A6EC-06 6 32260847 32260847 C T C6orf10 Missense_Mutation p.E535K 0.49 tolerated(0.06) probably_damaging(0.981) TCGA-D9-A6EC-06 6 32261042 32261042 C T C6orf10 Missense_Mutation p.E470K 0.43 tolerated(0.15) probably_damaging(0.981) TCGA-D9-A6EC-06 6 32411695 32411695 G A HLA-DRA 3'UTR 0.20 TCGA-D9-A6EC-06 6 32709223 32709223 G A HLA-DQA2 Translation_Start_Site p.M1? 0.22 deleterious(0) unknown(0) TCGA-D9-A6EC-06 6 32847003 32847003 C T PPP1R2P1 RNA 0.67 TCGA-D9-A6EC-06 6 32847128 32847128 A T PPP1R2P1 RNA 0.28 TCGA-D9-A6EC-06 6 32918448 32918448 G A HLA-DMA Missense_Mutation p.S74F 0.51 deleterious(0.01) possibly_damaging(0.703) TCGA-D9-A6EC-06 6 33132170 33132170 G A COL11A2 Silent p.H1562H 0.43 TCGA-D9-A6EC-06 6 33137257 33137257 C T COL11A2 Missense_Mutation p.G1148E 0.19 unknown(0) TCGA-D9-A6EC-06 6 33238037 33238037 T G VPS52 Missense_Mutation p.E38D 0.21 tolerated_low_confidence(0.42) benign(0.217) TCGA-D9-A6EC-06 6 33283416 33283416 G A ZBTB22 Silent p.I426I 0.46 TCGA-D9-A6EC-06 6 33287412 33287412 G A DAXX Missense_Mutation p.P562L 0.51 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 33290743 33290743 G A DAXX 5'UTR 0.37 TCGA-D9-A6EC-06 6 33423699 33423699 C T ZBTB9 Silent p.A274A 0.23 TCGA-D9-A6EC-06 6 33543169 33543169 T C BAK1 Missense_Mutation p.N86D 0.45 tolerated(0.11) benign(0.071) TCGA-D9-A6EC-06 6 34026782 34026782 G A GRM4 Silent p.V332V 0.52 TCGA-D9-A6EC-06 6 34309697 34309697 C T NUDT3 Missense_Mutation p.G51E 0.19 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 34507087 34507087 C T SPDEF Missense_Mutation p.E257K 0.43 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 34508852 34508852 C T SPDEF Silent p.K181K 0.50 TCGA-D9-A6EC-06 6 34826105 34826105 T G UHRF1BP1 Missense_Mutation p.F658V 0.19 deleterious(0) possibly_damaging(0.574) TCGA-D9-A6EC-06 6 34950591 34950591 C T ANKS1A Silent p.I265I 0.46 TCGA-D9-A6EC-06 6 35477696 35477696 C T TULP1 Missense_Mutation p.G170E 0.41 tolerated_low_confidence(0.1) benign(0.008) TCGA-D9-A6EC-06 6 35544965 35544965 C T FKBP5 Missense_Mutation p.G358S 0.38 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 6 35544966 35544966 C T FKBP5 Silent p.R357R 0.37 TCGA-D9-A6EC-06 6 35716465 35716465 G A ARMC12 Missense_Mutation p.E308K 0.40 tolerated(0.13) probably_damaging(0.961) TCGA-D9-A6EC-06 6 35773817 35773817 G A LHFPL5 Missense_Mutation p.A124T 0.43 tolerated(0.28) probably_damaging(0.92) TCGA-D9-A6EC-06 6 35936669 35936669 G A SLC26A8 Silent p.F450F 0.36 TCGA-D9-A6EC-06 6 36168838 36168838 C T BRPF3 Missense_Mutation p.P247S 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 36270114 36270114 C T PNPLA1 Nonsense_Mutation p.Q418* 0.50 TCGA-D9-A6EC-06 6 36293123 36293123 G A C6orf222 Missense_Mutation p.P369S 0.45 tolerated(0.59) benign(0) TCGA-D9-A6EC-06 6 36298049 36298049 C T C6orf222 Missense_Mutation p.G140E 0.18 tolerated(0.5) benign(0.277) TCGA-D9-A6EC-06 6 36464513 36464513 T C STK38 Silent p.P414P 0.12 TCGA-D9-A6EC-06 6 36823669 36823669 G A PPIL1 Missense_Mutation p.R141C 0.46 deleterious(0) possibly_damaging(0.74) TCGA-D9-A6EC-06 6 36929287 36929287 G A PI16 Missense_Mutation p.G152S 0.39 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 6 37247321 37247321 T C TBC1D22B Missense_Mutation p.S119P 0.23 tolerated(0.12) benign(0.003) TCGA-D9-A6EC-06 6 3727815 3727815 T C PXDC1 Missense_Mutation p.Q183R 0.18 tolerated_low_confidence(0.6) benign(0.006) TCGA-D9-A6EC-06 6 37336636 37336636 A G RNF8 Missense_Mutation p.K206R 0.21 tolerated(0.2) benign(0.007) TCGA-D9-A6EC-06 6 37349002 37349002 C T RNF8 Missense_Mutation p.P438L 0.51 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 38561815 38561815 A C BTBD9 Silent p.T158T 0.15 TCGA-D9-A6EC-06 6 38690808 38690808 G A DNAH8 5'Flank 0.51 TCGA-D9-A6EC-06 6 38843487 38843487 T G DNAH8 Missense_Mutation p.L2364V 0.29 probably_damaging(0.947) TCGA-D9-A6EC-06 6 38867668 38867668 G A DNAH8 Silent p.Q2843Q 0.26 TCGA-D9-A6EC-06 6 38905767 38905767 G A DNAH8 Missense_Mutation p.E3644K 0.23 probably_damaging(0.977) TCGA-D9-A6EC-06 6 39073313 39073313 C T SAYSD1 Silent p.K149K 0.44 TCGA-D9-A6EC-06 6 40399579 40399579 G A LRFN2 Missense_Mutation p.A425V 0.41 tolerated(0.31) benign(0.021) TCGA-D9-A6EC-06 6 4070064 4070064 A G FAM217A Silent p.A131A 0.28 TCGA-D9-A6EC-06 6 41021099 41021099 G A APOBEC2 Missense_Mutation p.E5K 0.23 tolerated_low_confidence(0.19) benign(0.03) TCGA-D9-A6EC-06 6 41168757 41168757 A C TREML2 5'UTR 0.17 TCGA-D9-A6EC-06 6 41168921 41168921 C T TREML2 5'UTR 0.32 TCGA-D9-A6EC-06 6 41185678 41185678 G A TREML3P Intron 0.14 TCGA-D9-A6EC-06 6 41250188 41250188 C T TREM1 Silent p.Q117Q 0.55 TCGA-D9-A6EC-06 6 4130766 4130766 A G ECI2 Missense_Mutation p.L114S 0.10 deleterious(0) probably_damaging(0.988) TCGA-D9-A6EC-06 6 41655500 41655500 G A TFEB Missense_Mutation p.H240Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 42657358 42657358 T G UBR2 Missense_Mutation p.F1692L 0.07 tolerated(0.16) benign(0.127) TCGA-D9-A6EC-06 6 42797106 42797106 T G GLTSCR1L Silent p.A345A 0.10 TCGA-D9-A6EC-06 6 42848679 42848679 A T RPL7L1 Missense_Mutation p.K32M 0.14 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 6 42979967 42979967 T G MEA1 3'UTR 0.44 TCGA-D9-A6EC-06 6 42992732 42992732 A C RRP36 Missense_Mutation p.N47T 0.21 tolerated(0.46) benign(0.004) TCGA-D9-A6EC-06 6 43014734 43014734 T A CUL7 Nonsense_Mutation p.K845* 0.20 TCGA-D9-A6EC-06 6 43109923 43109923 C T PTK7 Nonsense_Mutation p.Q653* 0.40 TCGA-D9-A6EC-06 6 43113057 43113057 T C PTK7 Missense_Mutation p.F851L 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 43250669 43250669 G A TTBK1 Missense_Mutation p.G731R 0.54 probably_damaging(0.999) TCGA-D9-A6EC-06 6 43250683 43250683 G A TTBK1 Silent p.E735E 0.45 TCGA-D9-A6EC-06 6 43266301 43266301 C T SLC22A7 Missense_Mutation p.L69F 0.44 deleterious(0.02) benign(0.02) TCGA-D9-A6EC-06 6 43266305 43266305 C T SLC22A7 Missense_Mutation p.P70L 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-D9-A6EC-06 6 43412925 43412925 T G ABCC10 Missense_Mutation p.L968R 0.15 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 43581767 43581767 C T POLH Silent p.L539L 0.19 TCGA-D9-A6EC-06 6 44137169 44137169 C T CAPN11 Silent p.F80F 0.50 TCGA-D9-A6EC-06 6 44268344 44268344 G A AARS2 Silent p.S966S 0.23 TCGA-D9-A6EC-06 6 44922337 44922337 T G SUPT3H Missense_Mutation p.K207N 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-D9-A6EC-06 6 44929548 44929548 A G SUPT3H Silent p.T185T 0.19 TCGA-D9-A6EC-06 6 46135835 46135835 C T ENPP5 Missense_Mutation p.M55I 0.32 tolerated(0.9) benign(0.072) TCGA-D9-A6EC-06 6 46214550 46214550 G A RCAN2 Missense_Mutation p.P169L 0.50 tolerated(0.12) possibly_damaging(0.598) TCGA-D9-A6EC-06 6 46656773 46656781 GGGAGGAGA - TDRD6 In_Frame_Del p.R306_E308del 0.29 TCGA-D9-A6EC-06 6 46826272 46826272 C T GPR116 Missense_Mutation p.S1123N 0.33 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 6 46846053 46846053 C T GPR116 Missense_Mutation p.E376K 0.55 tolerated(0.13) benign(0.008) TCGA-D9-A6EC-06 6 46968011 46968011 G A GPR110 Missense_Mutation p.T894I 0.14 tolerated(0.08) benign(0.056) TCGA-D9-A6EC-06 6 47501479 47501479 A T CD2AP Missense_Mutation p.N103Y 0.12 deleterious(0.03) benign(0.141) TCGA-D9-A6EC-06 6 47547126 47547126 T C CD2AP Silent p.T303T 0.22 TCGA-D9-A6EC-06 6 49696387 49696387 C T CRISP3 3'UTR 0.39 TCGA-D9-A6EC-06 6 49753838 49753838 G A PGK2 Missense_Mutation p.L355F 0.47 tolerated(0.12) benign(0.207) TCGA-D9-A6EC-06 6 49754854 49754854 C T PGK2 Missense_Mutation p.G16E 0.54 deleterious(0.02) benign(0.177) TCGA-D9-A6EC-06 6 49986831 49986831 C T DEFB110 Silent p.K21K 0.36 TCGA-D9-A6EC-06 6 50805739 50805739 C T TFAP2B Silent p.I291I 0.24 TCGA-D9-A6EC-06 6 51524441 51524441 G A PKHD1 Missense_Mutation p.L3495F 0.37 tolerated(0.1) possibly_damaging(0.671) TCGA-D9-A6EC-06 6 51768462 51768462 C T PKHD1 Missense_Mutation p.G2310E 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 51768463 51768463 C T PKHD1 Missense_Mutation p.G2310R 0.38 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 6 51890747 51890747 C T PKHD1 Silent p.V1287V 0.18 TCGA-D9-A6EC-06 6 51920406 51920406 A G PKHD1 Silent p.Y605Y 0.08 TCGA-D9-A6EC-06 6 52303324 52303324 C T EFHC1 Nonsense_Mutation p.R170* 0.43 TCGA-D9-A6EC-06 6 53989330 53989330 G A MLIP Silent p.A93A 0.40 TCGA-D9-A6EC-06 6 53989466 53989466 G A MLIP Missense_Mutation p.D139N 0.34 deleterious(0) possibly_damaging(0.797) TCGA-D9-A6EC-06 6 54735477 54735477 G A FAM83B Missense_Mutation p.E145K 0.48 deleterious(0.02) benign(0.41) TCGA-D9-A6EC-06 6 54805729 54805729 C T FAM83B Nonsense_Mutation p.Q654* 0.13 TCGA-D9-A6EC-06 6 54805757 54805757 G A FAM83B Missense_Mutation p.R663Q 0.44 deleterious(0.02) probably_damaging(0.943) TCGA-D9-A6EC-06 6 55039521 55039521 G A HCRTR2 Missense_Mutation p.E46K 0.48 deleterious(0.04) benign(0.218) TCGA-D9-A6EC-06 6 55196558 55196558 A T GFRAL Missense_Mutation p.N23I 0.13 deleterious(0) benign(0.041) TCGA-D9-A6EC-06 6 55360217 55360217 C T HMGCLL1 Silent p.Q295Q 0.33 TCGA-D9-A6EC-06 6 55922392 55922392 C T COL21A1 3'UTR 0.38 TCGA-D9-A6EC-06 6 55942327 55942327 C T COL21A1 Silent p.K619K 0.40 TCGA-D9-A6EC-06 6 55942362 55942362 C T COL21A1 Missense_Mutation p.G608R 0.56 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 6 56033065 56033065 G A COL21A1 Missense_Mutation p.R353C 0.27 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.36 deleterious(0.02) benign(0.201) TCGA-D9-A6EC-06 6 56462756 56462756 G A DST Missense_Mutation p.L1370F 0.27 probably_damaging(1) TCGA-D9-A6EC-06 6 56462757 56462757 G A DST Silent p.N1369N 0.27 TCGA-D9-A6EC-06 6 56483900 56483900 T C DST Intron 0.06 TCGA-D9-A6EC-06 6 57246859 57246859 C T PRIM2 Nonsense_Mutation p.R196* 0.24 TCGA-D9-A6EC-06 6 6167712 6167712 G A F13A1 Silent p.T629T 0.40 TCGA-D9-A6EC-06 6 62757798 62757798 C T KHDRBS2 Missense_Mutation p.M107I 0.41 tolerated(0.06) probably_damaging(0.977) TCGA-D9-A6EC-06 6 62757802 62757802 G A KHDRBS2 Missense_Mutation p.S106L 0.43 deleterious(0) probably_damaging(0.946) TCGA-D9-A6EC-06 6 63991125 63991125 C T LGSN Missense_Mutation p.E111K 0.27 deleterious(0.01) benign(0.16) TCGA-D9-A6EC-06 6 63995539 63995539 G A LGSN Missense_Mutation p.L95F 0.59 deleterious(0.04) possibly_damaging(0.457) TCGA-D9-A6EC-06 6 70049357 70049357 C T BAI3 Silent p.G1140G 0.96 TCGA-D9-A6EC-06 6 70637924 70637924 G A COL19A1 Silent p.Q130Q 0.97 TCGA-D9-A6EC-06 6 70646763 70646763 G A COL19A1 Silent p.K278K 0.34 TCGA-D9-A6EC-06 6 70733529 70733529 G A COL19A1 Missense_Mutation p.G346E 0.84 deleterious(0) unknown(0) TCGA-D9-A6EC-06 6 7211092 7211092 T C RREB1 Missense_Mutation p.S161P 0.09 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 6 7230849 7230849 T C RREB1 Silent p.A839A 0.21 TCGA-D9-A6EC-06 6 7231632 7231632 T G RREB1 Silent p.A1100A 0.26 TCGA-D9-A6EC-06 6 7231875 7231875 C T RREB1 Silent p.I1181I 0.23 TCGA-D9-A6EC-06 6 72596825 72596825 G A RIMS1 Silent p.R33R 1.00 TCGA-D9-A6EC-06 6 72967945 72967945 G A RIMS1 Missense_Mutation p.G963E 0.90 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 6 73110317 73110317 A T RIMS1 Silent p.P1660P 0.96 TCGA-D9-A6EC-06 6 73110318 73110318 C T RIMS1 Missense_Mutation p.P1661S 0.93 deleterious(0) possibly_damaging(0.833) TCGA-D9-A6EC-06 6 7327114 7327114 C T CAGE1 Missense_Mutation p.E833K 0.42 tolerated_low_confidence(0.35) benign(0.023) TCGA-D9-A6EC-06 6 7373626 7373626 C T CAGE1 Missense_Mutation p.E476K 0.55 deleterious(0.01) probably_damaging(0.953) TCGA-D9-A6EC-06 6 73951237 73951237 G A KHDC1 3'UTR 0.93 TCGA-D9-A6EC-06 6 7572239 7572239 A C DSP Missense_Mutation p.N690H 0.10 possibly_damaging(0.553) TCGA-D9-A6EC-06 6 7581043 7581043 C T DSP Silent p.I1540I 0.52 TCGA-D9-A6EC-06 6 7584030 7584030 A C DSP Missense_Mutation p.K2179Q 0.24 probably_damaging(0.996) TCGA-D9-A6EC-06 6 7585958 7585958 G A DSP Silent p.S2821S 0.48 TCGA-D9-A6EC-06 6 75884836 75884836 C T COL12A1 Silent p.G876G 0.91 TCGA-D9-A6EC-06 6 7601683 7601683 A C SNRNP48 Missense_Mutation p.K174T 0.11 tolerated(0.11) benign(0.064) TCGA-D9-A6EC-06 6 76782179 76782179 A C IMPG1 Missense_Mutation p.I9M 0.36 deleterious(0.01) possibly_damaging(0.467) TCGA-D9-A6EC-06 6 83835246 83835246 C T DOPEY1 Missense_Mutation p.H505Y 0.46 tolerated(1) possibly_damaging(0.791) TCGA-D9-A6EC-06 6 83963402 83963402 G A ME1 Missense_Mutation p.R254C 0.88 deleterious(0) possibly_damaging(0.539) TCGA-D9-A6EC-06 6 84233841 84233841 G A PRSS35 Silent p.A227A 0.80 TCGA-D9-A6EC-06 6 84627738 84627738 A G CYB5R4 Missense_Mutation p.S154G 0.30 tolerated(0.19) benign(0.044) TCGA-D9-A6EC-06 6 88376767 88376767 G C ORC3 Missense_Mutation p.E689Q 0.25 tolerated(0.29) benign(0.182) TCGA-D9-A6EC-06 6 89855890 89855890 G A PM20D2 Silent p.V9V 0.87 TCGA-D9-A6EC-06 6 89855891 89855891 G A PM20D2 Missense_Mutation p.E10K 0.87 tolerated_low_confidence(0.24) benign(0.001) TCGA-D9-A6EC-06 6 89927103 89927103 C A GABRR1 5'UTR 0.75 TCGA-D9-A6EC-06 6 90402774 90402774 G A MDN1 Silent p.S3325S 0.84 TCGA-D9-A6EC-06 6 90402775 90402775 G A MDN1 Missense_Mutation p.S3325F 0.84 benign(0.359) TCGA-D9-A6EC-06 6 90647974 90647974 T C BACH2 Silent p.L644L 0.16 TCGA-D9-A6EC-06 6 93969189 93969189 G A EPHA7 Missense_Mutation p.P603S 0.91 tolerated(0.06) possibly_damaging(0.685) TCGA-D9-A6EC-06 7 100006159 100006159 T C ZCWPW1 Intron 0.10 TCGA-D9-A6EC-06 7 100205416 100205416 C T PCOLCE Missense_Mutation p.P390L 0.40 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 7 100359905 100359905 A C ZAN Missense_Mutation p.K1304Q 0.12 unknown(0) TCGA-D9-A6EC-06 7 100410568 100410568 T G EPHB4 Missense_Mutation p.K640T 0.06 deleterious(0) probably_damaging(0.957) TCGA-D9-A6EC-06 7 100551944 100551944 C T MUC3A Missense_Mutation p.T232I 0.22 deleterious(0) possibly_damaging(0.665) TCGA-D9-A6EC-06 7 100609808 100609808 C T MUC3A Silent p.S816S 0.11 TCGA-D9-A6EC-06 7 100675428 100675428 G A MUC17 Missense_Mutation p.S244N 0.46 benign(0.009) TCGA-D9-A6EC-06 7 100675607 100675607 A T MUC17 Missense_Mutation p.I304F 0.45 benign(0.018) TCGA-D9-A6EC-06 7 100677500 100677500 C T MUC17 Missense_Mutation p.P935S 0.47 probably_damaging(0.936) TCGA-D9-A6EC-06 7 100678358 100678358 T G MUC17 Missense_Mutation p.L1221V 0.22 unknown(0) TCGA-D9-A6EC-06 7 100678406 100678406 A G MUC17 Missense_Mutation p.S1237G 0.20 unknown(0) TCGA-D9-A6EC-06 7 100678420 100678420 A G MUC17 Silent p.T1241T 0.04 TCGA-D9-A6EC-06 7 100684010 100684010 A G MUC17 Missense_Mutation p.T3105A 0.14 probably_damaging(0.952) TCGA-D9-A6EC-06 7 100684681 100684681 T G MUC17 Silent p.T3328T 0.25 TCGA-D9-A6EC-06 7 100686365 100686365 C T MUC17 Missense_Mutation p.P3890S 0.50 benign(0) TCGA-D9-A6EC-06 7 100843560 100843560 C T MOGAT3 Silent p.R81R 0.40 TCGA-D9-A6EC-06 7 100880831 100880831 A T CLDN15 Missense_Mutation p.F11Y 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-D9-A6EC-06 7 1009046 1009046 A T COX19 Missense_Mutation p.L81M 0.15 deleterious(0.02) possibly_damaging(0.703) TCGA-D9-A6EC-06 7 101259573 101259573 C T MYL10 Missense_Mutation p.D154N 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-D9-A6EC-06 7 101845321 101845321 C T CUX1 Missense_Mutation p.P926L 0.47 deleterious(0) unknown(0) TCGA-D9-A6EC-06 7 101926380 101926380 T C SH2B2 5'Flank 0.24 TCGA-D9-A6EC-06 7 102107895 102107895 C T LRWD1 Missense_Mutation p.P181L 0.10 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 103018141 103018141 T G SLC26A5 Silent p.R631R 0.09 TCGA-D9-A6EC-06 7 103234941 103234941 T G RELN Splice_Site p.X1180_splice 0.48 TCGA-D9-A6EC-06 7 103270610 103270610 C T RELN Missense_Mutation p.E827K 0.33 tolerated(0.24) probably_damaging(0.991) TCGA-D9-A6EC-06 7 103322598 103322598 C T RELN Silent p.E418E 0.44 TCGA-D9-A6EC-06 7 103474022 103474022 C T RELN Nonsense_Mutation p.W145* 0.36 TCGA-D9-A6EC-06 7 103841347 103841347 T G ORC5 Missense_Mutation p.Q75H 0.17 tolerated(0.33) benign(0.001) TCGA-D9-A6EC-06 7 104748312 104748312 T C KMT2E Silent p.T1136T 0.19 TCGA-D9-A6EC-06 7 105190527 105190527 T G RINT1 Missense_Mutation p.L341R 0.25 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 105204295 105204295 T G RINT1 Missense_Mutation p.I596S 0.11 deleterious(0) benign(0.202) TCGA-D9-A6EC-06 7 105635202 105635202 C T CDHR3 Silent p.F173F 0.20 TCGA-D9-A6EC-06 7 106508132 106508132 C T PIK3CG Silent p.F42F 0.50 TCGA-D9-A6EC-06 7 106508680 106508680 A C PIK3CG Missense_Mutation p.H225P 0.15 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 7 106508753 106508753 C T PIK3CG Silent p.F249F 0.22 TCGA-D9-A6EC-06 7 107399133 107399133 C T CBLL1 Missense_Mutation p.S329L 0.47 tolerated(0.17) benign(0.009) TCGA-D9-A6EC-06 7 107818537 107818537 A T NRCAM Missense_Mutation p.L958M 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 7 108524089 108524089 G A C7orf66 Missense_Mutation p.S108F 0.36 tolerated_low_confidence(0.07) benign(0.003) TCGA-D9-A6EC-06 7 111368759 111368759 G A DOCK4 Silent p.F1824F 0.48 TCGA-D9-A6EC-06 7 111368763 111368763 G A DOCK4 Missense_Mutation p.S1823F 0.39 deleterious_low_confidence(0) benign(0.129) TCGA-D9-A6EC-06 7 111970219 111970219 A C ZNF277 Missense_Mutation p.K250T 0.24 deleterious(0) possibly_damaging(0.799) TCGA-D9-A6EC-06 7 111981038 111981038 C T ZNF277 Missense_Mutation p.T374I 0.45 tolerated(0.18) benign(0.005) TCGA-D9-A6EC-06 7 112724555 112724555 G A GPR85 Silent p.F74F 0.41 TCGA-D9-A6EC-06 7 113558846 113558846 G A PPP1R3A Missense_Mutation p.S69F 0.49 deleterious(0.01) possibly_damaging(0.615) TCGA-D9-A6EC-06 7 116339687 116339687 A C MET Missense_Mutation p.K183N 0.16 deleterious(0.02) possibly_damaging(0.839) TCGA-D9-A6EC-06 7 117023162 117023162 G A ASZ1 Silent p.I230I 0.29 TCGA-D9-A6EC-06 7 117170978 117170978 T G CFTR Missense_Mutation p.L100R 0.38 deleterious(0.05) possibly_damaging(0.812) TCGA-D9-A6EC-06 7 117171039 117171039 G A CFTR Silent p.A120A 0.50 TCGA-D9-A6EC-06 7 117175431 117175431 C T CFTR Nonsense_Mutation p.Q237* 0.46 TCGA-D9-A6EC-06 7 117180229 117180229 C T CFTR Silent p.F315F 0.40 TCGA-D9-A6EC-06 7 117180246 117180246 C T CFTR Missense_Mutation p.S321F 0.18 deleterious(0) benign(0.184) TCGA-D9-A6EC-06 7 117182070 117182070 G A CFTR Missense_Mutation p.D373N 0.48 tolerated(0.11) benign(0.006) TCGA-D9-A6EC-06 7 117199591 117199591 C T CFTR Missense_Mutation p.S489L 0.52 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 7 117304798 117304798 G A CFTR Silent p.V1340V 0.44 TCGA-D9-A6EC-06 7 117306992 117306992 G A CFTR Missense_Mutation p.D1425N 0.33 deleterious(0.02) benign(0.024) TCGA-D9-A6EC-06 7 119915675 119915675 C T KCND2 Missense_Mutation p.S330L 0.18 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 7 120629735 120629735 G A CPED1 Silent p.V20V 0.47 TCGA-D9-A6EC-06 7 121659238 121659238 A C PTPRZ1 Missense_Mutation p.K1635T 0.29 deleterious(0.02) benign(0.168) TCGA-D9-A6EC-06 7 121755208 121755208 G A AASS Silent p.T321T 0.51 TCGA-D9-A6EC-06 7 122221238 122221238 C T CADPS2 Missense_Mutation p.G444R 0.20 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 123101417 123101417 C T IQUB Silent p.L667L 0.34 TCGA-D9-A6EC-06 7 123257651 123257651 G A ASB15 Nonsense_Mutation p.W104* 0.22 TCGA-D9-A6EC-06 7 123257740 123257740 G A ASB15 Missense_Mutation p.G134R 0.45 deleterious(0.01) probably_damaging(0.946) TCGA-D9-A6EC-06 7 123332510 123332510 A C WASL Missense_Mutation p.I413S 0.13 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 123508656 123508656 G A HYAL4 Missense_Mutation p.G110E 0.36 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 123599568 123599568 G A SPAM1 Missense_Mutation p.E359K 0.35 tolerated(1) benign(0.004) TCGA-D9-A6EC-06 7 127013831 127013831 T G ZNF800 Missense_Mutation p.K520T 0.07 deleterious(0.01) benign(0.072) TCGA-D9-A6EC-06 7 127235571 127235571 A G FSCN3 Missense_Mutation p.N119D 0.52 tolerated(1) benign(0.007) TCGA-D9-A6EC-06 7 127892155 127892155 A G LEP Silent p.Q28Q 0.06 TCGA-D9-A6EC-06 7 128033044 128033044 G A IMPDH1 3'UTR 0.40 TCGA-D9-A6EC-06 7 128034514 128034514 G A IMPDH1 Missense_Mutation p.L564F 0.43 deleterious(0.03) benign(0.443) TCGA-D9-A6EC-06 7 128035014 128035014 G A IMPDH1 Silent p.L493L 0.46 TCGA-D9-A6EC-06 7 128483902 128483902 C T FLNC Missense_Mutation p.P955L 0.39 deleterious(0.01) probably_damaging(1) TCGA-D9-A6EC-06 7 128491652 128491652 C T FLNC Missense_Mutation p.P1938S 0.47 deleterious(0.05) benign(0.018) TCGA-D9-A6EC-06 7 128496572 128496572 G A FLNC Missense_Mutation p.E2418K 0.45 tolerated(0.27) probably_damaging(0.916) TCGA-D9-A6EC-06 7 128801527 128801527 C T TSPAN33 Missense_Mutation p.S37F 0.46 deleterious(0) probably_damaging(0.926) TCGA-D9-A6EC-06 7 129770447 129770447 A C KLHDC10 Missense_Mutation p.K397T 0.22 deleterious(0.01) benign(0.2) TCGA-D9-A6EC-06 7 129832632 129832632 G A TMEM209 Missense_Mutation p.P202L 0.40 tolerated(0.1) benign(0.04) TCGA-D9-A6EC-06 7 129910625 129910625 A G CPA2 Silent p.E127E 0.14 TCGA-D9-A6EC-06 7 129986368 129986368 C T CPA5 Silent p.S14S 0.46 TCGA-D9-A6EC-06 7 129986424 129986424 G A CPA5 Missense_Mutation p.G33D 0.52 tolerated(0.15) possibly_damaging(0.907) TCGA-D9-A6EC-06 7 131864524 131864524 C T PLXNA4 Missense_Mutation p.E1266K 0.42 tolerated(0.08) probably_damaging(0.972) TCGA-D9-A6EC-06 7 131870169 131870169 T C PLXNA4 Missense_Mutation p.E1016G 0.08 tolerated(0.47) benign(0.003) TCGA-D9-A6EC-06 7 132193314 132193314 G A PLXNA4 Missense_Mutation p.P47S 0.44 tolerated(0.78) benign(0.004) TCGA-D9-A6EC-06 7 134260208 134260208 G A AKR1B15 Missense_Mutation p.A184T 0.42 deleterious(0.04) probably_damaging(0.993) TCGA-D9-A6EC-06 7 134576368 134576368 G A CALD1 Intron 0.50 TCGA-D9-A6EC-06 7 134896311 134896311 G A WDR91 5'Flank 0.33 TCGA-D9-A6EC-06 7 136700324 136700324 G A CHRM2 Missense_Mutation p.G238R 0.44 tolerated(0.25) benign(0.392) TCGA-D9-A6EC-06 7 138313035 138313035 C T SVOPL Missense_Mutation p.G313S 0.51 tolerated(0.38) benign(0.072) TCGA-D9-A6EC-06 7 138400601 138400601 T G ATP6V0A4 Missense_Mutation p.H722P 0.14 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 7 138603530 138603530 A C KIAA1549 Missense_Mutation p.L281R 0.25 tolerated(0.08) possibly_damaging(0.839) TCGA-D9-A6EC-06 7 138738822 138738822 A C ZC3HAV1 Missense_Mutation p.L736R 0.23 tolerated(0.49) benign(0.075) TCGA-D9-A6EC-06 7 138768553 138768553 T G ZC3HAV1 Missense_Mutation p.M224L 0.27 tolerated(0.67) benign(0.004) TCGA-D9-A6EC-06 7 138943251 138943251 C T UBN2 Silent p.P227P 0.44 TCGA-D9-A6EC-06 7 139226816 139226816 G A CLEC2L Missense_Mutation p.R161K 0.22 tolerated(0.27) benign(0.209) TCGA-D9-A6EC-06 7 139257939 139257939 G A HIPK2 Silent p.L1111L 0.53 TCGA-D9-A6EC-06 7 140301493 140301493 C T DENND2A Silent p.R235R 0.52 TCGA-D9-A6EC-06 7 140477853 140477853 C A BRAF Missense_Mutation p.L485F 0.55 deleterious(0) probably_damaging(0.949) TCGA-D9-A6EC-06 7 140477854 140477854 A T BRAF Nonsense_Mutation p.L485* 0.55 TCGA-D9-A6EC-06 7 141464623 141464623 G A TAS2R3 Missense_Mutation p.R222K 0.48 tolerated(0.16) benign(0.393) TCGA-D9-A6EC-06 7 141490305 141490305 C T TAS2R5 Silent p.I48I 0.48 TCGA-D9-A6EC-06 7 141705447 141705447 G A MGAM Silent p.L39L 0.42 TCGA-D9-A6EC-06 7 141795381 141795381 C T MGAM Missense_Mutation p.S1596F 0.45 deleterious(0.03) benign(0.135) TCGA-D9-A6EC-06 7 142013243 142013243 G A TRBV4-1 Missense_Mutation p.G33E 0.41 tolerated(0.46) possibly_damaging(0.558) TCGA-D9-A6EC-06 7 142111472 142111472 G A TRBV5-7 Silent p.F88F 0.48 TCGA-D9-A6EC-06 7 142124383 142124383 A C TRBV6-8 Missense_Mutation p.L32R 0.12 tolerated(0.34) benign(0.037) TCGA-D9-A6EC-06 7 142124529 142124529 G A TRBV6-8 Missense_Mutation p.L13F 0.39 tolerated(0.22) benign(0.257) TCGA-D9-A6EC-06 7 142124538 142124538 C T TRBV6-8 Missense_Mutation p.A10T 0.37 tolerated(0.21) benign(0.071) TCGA-D9-A6EC-06 7 142131499 142131499 G A TRBV5-6 Missense_Mutation p.H86Y 0.43 tolerated(0.08) benign(0.003) TCGA-D9-A6EC-06 7 142139576 142139576 C T TRBV7-6 Splice_Site p.X17_splice 0.62 TCGA-D9-A6EC-06 7 142162184 142162184 T G TRBV6-6 Missense_Mutation p.I31L 0.46 tolerated(0.17) benign(0.046) TCGA-D9-A6EC-06 7 142223923 142223923 C T TRBV11-1 Missense_Mutation p.D82N 0.15 tolerated(0.09) benign(0.248) TCGA-D9-A6EC-06 7 142428761 142428761 G A TRBV28 Missense_Mutation p.E41K 0.44 tolerated(0.45) benign(0.091) TCGA-D9-A6EC-06 7 142428878 142428878 C T TRBV28 Missense_Mutation p.P80S 0.40 tolerated(0.4) benign(0.225) TCGA-D9-A6EC-06 7 142478863 142478863 C T PRSS3P2 RNA 0.75 TCGA-D9-A6EC-06 7 142481173 142481173 G A PRSS3P2 RNA 0.45 TCGA-D9-A6EC-06 7 142498841 142498841 C T TRBC2 Missense_Mutation p.H40Y 0.13 deleterious(0.01) probably_damaging(0.972) TCGA-D9-A6EC-06 7 142568423 142568423 C T EPHB6 Missense_Mutation p.A981V 0.50 tolerated(0.17) benign(0.026) TCGA-D9-A6EC-06 7 142640950 142640950 G A KEL Silent p.F504F 0.38 TCGA-D9-A6EC-06 7 142649667 142649667 C G KEL Missense_Mutation p.D378H 0.16 deleterious(0.02) possibly_damaging(0.801) TCGA-D9-A6EC-06 7 142651043 142651043 C T KEL Missense_Mutation p.E309K 0.37 deleterious(0.02) possibly_damaging(0.902) TCGA-D9-A6EC-06 7 142723677 142723677 G A OR9A2 Silent p.L181L 0.19 TCGA-D9-A6EC-06 7 142749795 142749795 C T OR6V1 Missense_Mutation p.R120C 0.44 deleterious(0.01) probably_damaging(0.968) TCGA-D9-A6EC-06 7 142919780 142919780 C T TAS2R40 Silent p.F203F 0.51 TCGA-D9-A6EC-06 7 142983848 142983848 C T TMEM139 Missense_Mutation p.P193S 0.41 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 143029932 143029932 T G CLCN1 Missense_Mutation p.V456G 0.33 deleterious(0) possibly_damaging(0.631) TCGA-D9-A6EC-06 7 143047534 143047534 C T CLCN1 Missense_Mutation p.P825S 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 7 143078777 143078777 C T ZYX Missense_Mutation p.P38L 0.29 deleterious(0) unknown(0) TCGA-D9-A6EC-06 7 143078778 143078778 C T ZYX Silent p.P38P 0.30 TCGA-D9-A6EC-06 7 143141090 143141090 G A TAS2R60 Missense_Mutation p.G182D 0.48 tolerated(0.2) possibly_damaging(0.637) TCGA-D9-A6EC-06 7 143657380 143657380 C T OR2F1 Missense_Mutation p.A106V 0.49 tolerated(0.11) possibly_damaging(0.493) TCGA-D9-A6EC-06 7 143771320 143771320 G A OR2A25 Missense_Mutation p.G3E 0.45 tolerated(0.53) benign(0.002) TCGA-D9-A6EC-06 7 14378231 14378231 C T DGKB Silent p.K678K 0.45 TCGA-D9-A6EC-06 7 143792319 143792319 G A OR2A12 Missense_Mutation p.G40E 0.43 deleterious(0.02) possibly_damaging(0.621) TCGA-D9-A6EC-06 7 143792395 143792395 G A OR2A12 Silent p.L65L 0.32 TCGA-D9-A6EC-06 7 143806934 143806934 C T OR2A2 Nonsense_Mutation p.Q87* 0.40 TCGA-D9-A6EC-06 7 143807250 143807250 G A OR2A2 Nonsense_Mutation p.W192* 0.44 TCGA-D9-A6EC-06 7 143826574 143826574 G A OR2A14 Silent p.A123A 0.46 TCGA-D9-A6EC-06 7 147914464 147914464 G A CNTNAP2 Missense_Mutation p.R1032K 0.46 tolerated(0.65) benign(0.001) TCGA-D9-A6EC-06 7 148106497 148106497 C T CNTNAP2 Missense_Mutation p.P1244S 0.19 tolerated(0.66) benign(0.003) TCGA-D9-A6EC-06 7 148495081 148495081 C T CUL1 Missense_Mutation p.T667I 0.40 deleterious(0.01) possibly_damaging(0.741) TCGA-D9-A6EC-06 7 148875975 148875975 A T ZNF398 Silent p.P337P 0.08 TCGA-D9-A6EC-06 7 149129654 149129654 T G ZNF777 Missense_Mutation p.K570T 0.11 tolerated(0.26) possibly_damaging(0.57) TCGA-D9-A6EC-06 7 149191588 149191588 G A ZNF746 Missense_Mutation p.P11S 0.20 tolerated(0.3) possibly_damaging(0.648) TCGA-D9-A6EC-06 7 149430525 149430525 G A KRBA1 Missense_Mutation p.V827M 0.56 tolerated(0.15) probably_damaging(0.986) TCGA-D9-A6EC-06 7 149467591 149467591 G A ZNF467 Missense_Mutation p.S30F 0.21 tolerated(0.06) benign(0.02) TCGA-D9-A6EC-06 7 149477938 149477938 G A SSPO RNA 0.38 TCGA-D9-A6EC-06 7 149484645 149484645 C T SSPO RNA 0.40 TCGA-D9-A6EC-06 7 149499034 149499034 G A SSPO RNA 0.45 TCGA-D9-A6EC-06 7 150164069 150164069 C T GIMAP8 Missense_Mutation p.H95Y 0.44 tolerated(0.06) possibly_damaging(0.532) TCGA-D9-A6EC-06 7 150174572 150174572 G A GIMAP8 Missense_Mutation p.E568K 0.32 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 150327182 150327182 C T GIMAP6 Missense_Mutation p.E17K 0.44 tolerated(0.89) unknown(0) TCGA-D9-A6EC-06 7 150499314 150499314 C T TMEM176A Silent p.I62I 0.48 TCGA-D9-A6EC-06 7 150704006 150704006 C T NOS3 Missense_Mutation p.S617F 0.20 deleterious(0) possibly_damaging(0.714) TCGA-D9-A6EC-06 7 150745968 150745968 T C ASIC3 5'Flank 0.17 TCGA-D9-A6EC-06 7 150883968 150883968 C T ASB10 Missense_Mutation p.D84N 0.47 tolerated(0.75) benign(0.024) TCGA-D9-A6EC-06 7 150936775 150936775 T G SMARCD3 Missense_Mutation p.S411R 0.15 tolerated(0.31) benign(0.168) TCGA-D9-A6EC-06 7 151254258 151254258 T G PRKAG2 3'UTR 0.11 TCGA-D9-A6EC-06 7 151700004 151700004 C T GALNTL5 Silent p.F288F 0.51 TCGA-D9-A6EC-06 7 151860080 151860080 T G KMT2C Missense_Mutation p.N3528H 0.23 possibly_damaging(0.67) TCGA-D9-A6EC-06 7 1519155 1519155 T G INTS1 Missense_Mutation p.S1414R 0.25 tolerated(0.33) benign(0.04) TCGA-D9-A6EC-06 7 151962177 151962177 G A KMT2C Missense_Mutation p.P377L 0.08 possibly_damaging(0.792) TCGA-D9-A6EC-06 7 15405186 15405186 A C AGMO Missense_Mutation p.F406V 0.12 tolerated(0.18) benign(0.002) TCGA-D9-A6EC-06 7 15430522 15430522 G A AGMO Missense_Mutation p.R229C 0.33 deleterious(0.02) possibly_damaging(0.836) TCGA-D9-A6EC-06 7 1544063 1544063 G A INTS1 5'Flank 0.50 TCGA-D9-A6EC-06 7 154681051 154681051 G A DPP6 Missense_Mutation p.D792N 0.45 deleterious(0.02) probably_damaging(0.977) TCGA-D9-A6EC-06 7 156436519 156436519 G T RNF32 5'UTR 0.44 TCGA-D9-A6EC-06 7 156798273 156798273 A G MNX1 Missense_Mutation p.C383R 0.19 deleterious_low_confidence(0) unknown(0) TCGA-D9-A6EC-06 7 157931180 157931180 T C PTPRN2 Missense_Mutation p.D313G 0.18 tolerated(0.06) benign(0.104) TCGA-D9-A6EC-06 7 157959759 157959759 G A PTPRN2 Silent p.P258P 0.57 TCGA-D9-A6EC-06 7 158829578 158829578 T G VIPR2 Missense_Mutation p.S205R 0.08 deleterious(0.01) probably_damaging(0.933) TCGA-D9-A6EC-06 7 16255803 16255803 T G ISPD Missense_Mutation p.K380T 0.25 tolerated(0.2) benign(0.004) TCGA-D9-A6EC-06 7 16714165 16714165 C T BZW2 Missense_Mutation p.R63C 0.38 deleterious(0) probably_damaging(0.948) TCGA-D9-A6EC-06 7 16902261 16902261 G A AGR3 Missense_Mutation p.H67Y 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 16918209 16918209 A C AGR3 Missense_Mutation p.L12V 0.23 tolerated(0.22) benign(0.012) TCGA-D9-A6EC-06 7 17833866 17833866 G A SNX13 Missense_Mutation p.R893C 0.27 tolerated(0.17) benign(0.277) TCGA-D9-A6EC-06 7 19185033 19185033 G A FERD3L 5'UTR 0.53 TCGA-D9-A6EC-06 7 1976462 1976462 G A MAD1L1 Silent p.R556R 0.22 TCGA-D9-A6EC-06 7 20418876 20418876 A C ITGB8 Silent p.S197S 0.35 TCGA-D9-A6EC-06 7 20721139 20721139 T G ABCB5 Silent p.G573G 0.20 TCGA-D9-A6EC-06 7 2108856 2108856 G A MAD1L1 Silent p.L397L 0.43 TCGA-D9-A6EC-06 7 21788238 21788238 G A DNAH11 Missense_Mutation p.A2858T 0.11 possibly_damaging(0.844) TCGA-D9-A6EC-06 7 21882168 21882168 C T DNAH11 Silent p.I3573I 0.42 TCGA-D9-A6EC-06 7 21892142 21892142 G A DNAH11 Missense_Mutation p.D3659N 0.36 benign(0.111) TCGA-D9-A6EC-06 7 22533009 22533009 A C STEAP1B Missense_Mutation p.I177M 0.20 deleterious(0.02) possibly_damaging(0.854) TCGA-D9-A6EC-06 7 23381790 23381790 G A IGF2BP3 Missense_Mutation p.P366S 0.34 deleterious(0.01) benign(0.091) TCGA-D9-A6EC-06 7 23802527 23802527 C T STK31 Silent p.R467R 0.38 TCGA-D9-A6EC-06 7 2412373 2412373 C T EIF3B Missense_Mutation p.P585S 0.43 tolerated(0.1) possibly_damaging(0.873) TCGA-D9-A6EC-06 7 2613086 2613086 A C IQCE Missense_Mutation p.K143N 0.20 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 7 2687673 2687673 A C TTYH3 Missense_Mutation p.K236T 0.21 deleterious(0) probably_damaging(0.952) TCGA-D9-A6EC-06 7 2687680 2687680 C T TTYH3 Silent p.I238I 0.37 TCGA-D9-A6EC-06 7 27134945 27134945 G A HOXA1 Missense_Mutation p.S196L 0.21 deleterious(0.03) benign(0) TCGA-D9-A6EC-06 7 27182870 27182870 T A HOXA5 Missense_Mutation p.K119N 0.24 tolerated(0.28) benign(0.012) TCGA-D9-A6EC-06 7 30693199 30693199 C T CRHR2 Silent p.R398R 0.27 TCGA-D9-A6EC-06 7 30963155 30963155 C T AQP1 Missense_Mutation p.R241C 0.61 deleterious(0.01) probably_damaging(0.992) TCGA-D9-A6EC-06 7 31102825 31102825 G A ADCYAP1R1 5'UTR 0.49 TCGA-D9-A6EC-06 7 31142942 31142942 G A ADCYAP1R1 Missense_Mutation p.E408K 0.46 tolerated(0.29) possibly_damaging(0.734) TCGA-D9-A6EC-06 7 31793036 31793036 T A PDE1C Nonsense_Mutation p.K758* 0.45 TCGA-D9-A6EC-06 7 31862854 31862854 C T PDE1C Missense_Mutation p.S532N 0.22 tolerated(0.18) benign(0.003) TCGA-D9-A6EC-06 7 31918640 31918640 G A PDE1C Missense_Mutation p.H192Y 0.47 deleterious(0.04) probably_damaging(0.966) TCGA-D9-A6EC-06 7 34889327 34889327 C T NPSR1 Intron 0.34 TCGA-D9-A6EC-06 7 36571942 36571942 T G AOAH Missense_Mutation p.N439H 0.20 tolerated(0.14) probably_damaging(0.992) TCGA-D9-A6EC-06 7 39504252 39504252 G A POU6F2 Silent p.E681E 0.57 TCGA-D9-A6EC-06 7 4014112 4014112 T G SDK1 Silent p.G643G 0.25 TCGA-D9-A6EC-06 7 4091302 4091302 T C SDK1 Silent p.A917A 0.12 TCGA-D9-A6EC-06 7 4189053 4189053 C T SDK1 Missense_Mutation p.S1528F 0.55 deleterious(0.01) possibly_damaging(0.557) TCGA-D9-A6EC-06 7 4218131 4218131 C T SDK1 Missense_Mutation p.R1671W 0.47 deleterious(0) probably_damaging(0.954) TCGA-D9-A6EC-06 7 42262882 42262882 G A GLI3 5'UTR 0.50 TCGA-D9-A6EC-06 7 4247782 4247782 C T SDK1 Missense_Mutation p.L1756F 0.28 deleterious(0.03) benign(0.078) TCGA-D9-A6EC-06 7 43483976 43483976 C T HECW1 Missense_Mutation p.P402L 0.37 tolerated_low_confidence(0.73) benign(0) TCGA-D9-A6EC-06 7 43483977 43483977 C T HECW1 Silent p.P402P 0.36 TCGA-D9-A6EC-06 7 43546817 43546817 T G HECW1 Missense_Mutation p.L1238R 0.15 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 7 44047167 44047167 C T SPDYE1 Silent p.S311S 0.37 TCGA-D9-A6EC-06 7 44259811 44259811 G A CAMK2B Silent p.I617I 0.37 TCGA-D9-A6EC-06 7 44556397 44556397 G A NPC1L1 Silent p.L1169L 0.35 TCGA-D9-A6EC-06 7 44573154 44573154 G A NPC1L1 Missense_Mutation p.A762V 0.47 deleterious(0) probably_damaging(0.938) TCGA-D9-A6EC-06 7 44579709 44579709 A G NPC1L1 Missense_Mutation p.L96P 0.14 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 7 45957038 45957038 C T IGFBP3 Missense_Mutation p.G141E 0.36 tolerated(0.26) probably_damaging(1) TCGA-D9-A6EC-06 7 47463708 47463708 G A TNS3 Missense_Mutation p.S155F 0.35 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 47866971 47866971 C T PKD1L1 Silent p.E2277E 0.39 TCGA-D9-A6EC-06 7 4794185 4794185 A G FOXK1 Missense_Mutation p.E281G 0.31 deleterious(0.03) benign(0.009) TCGA-D9-A6EC-06 7 48273742 48273742 G A ABCA13 Silent p.L297L 0.27 TCGA-D9-A6EC-06 7 48528917 48528917 C T ABCA13 Missense_Mutation p.P4423S 0.35 possibly_damaging(0.52) TCGA-D9-A6EC-06 7 48559655 48559655 G A ABCA13 Missense_Mutation p.D4606N 0.37 benign(0.046) TCGA-D9-A6EC-06 7 50367354 50367354 G A IKZF1 Splice_Site p.X54_splice 0.40 TCGA-D9-A6EC-06 7 50450284 50450284 G A IKZF1 Silent p.Q156Q 0.33 TCGA-D9-A6EC-06 7 50605574 50605574 C T DDC Missense_Mutation p.G140E 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 50611691 50611691 A G DDC Silent p.P31P 0.15 TCGA-D9-A6EC-06 7 5104513 5104513 C T RBAK Missense_Mutation p.R476W 0.62 deleterious(0.01) benign(0.027) TCGA-D9-A6EC-06 7 53103927 53103927 G A POM121L12 Missense_Mutation p.G188E 0.48 deleterious(0.03) probably_damaging(0.988) TCGA-D9-A6EC-06 7 5340171 5340171 T C SLC29A4 Missense_Mutation p.L443P 0.05 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 7 5410823 5410823 G A TNRC18 Silent p.R1134R 0.51 TCGA-D9-A6EC-06 7 55249165 55249165 C T EGFR Silent p.I821I 0.37 TCGA-D9-A6EC-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.54 TCGA-D9-A6EC-06 7 5642993 5642993 A G FSCN1 Missense_Mutation p.K313R 0.10 tolerated(0.18) benign(0.114) TCGA-D9-A6EC-06 7 57188066 57188066 G A ZNF479 Silent p.P352P 0.30 TCGA-D9-A6EC-06 7 590101 590101 T C PRKAR1B Missense_Mutation p.Q371R 0.37 tolerated(0.14) probably_damaging(0.945) TCGA-D9-A6EC-06 7 5925752 5925752 G A OCM 3'UTR 0.39 TCGA-D9-A6EC-06 7 5966149 5966149 C T RSPH10B Silent p.E821E 0.29 TCGA-D9-A6EC-06 7 6155094 6155094 T C USP42 Missense_Mutation p.C128R 0.17 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 63721218 63721218 C T ZNF679 Missense_Mutation p.A58V 0.60 tolerated(0.17) benign(0.115) TCGA-D9-A6EC-06 7 71571186 71571186 A T CALN1 Missense_Mutation p.M113K 0.22 deleterious(0) benign(0.196) TCGA-D9-A6EC-06 7 72657937 72657937 C T GTF2IRD2P1 RNA 0.38 TCGA-D9-A6EC-06 7 72657973 72657973 G T GTF2IRD2P1 RNA 0.17 TCGA-D9-A6EC-06 7 72658669 72658669 C T GTF2IRD2P1 RNA 0.32 TCGA-D9-A6EC-06 7 72861604 72861604 A G BAZ1B Silent p.A1278A 0.11 TCGA-D9-A6EC-06 7 72883935 72883935 T G BAZ1B Missense_Mutation p.K926N 0.15 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 7 73150847 73150847 G A ABHD11 3'UTR 0.26 TCGA-D9-A6EC-06 7 73450916 73450916 T G ELN Splice_Site p.X55_splice 0.18 TCGA-D9-A6EC-06 7 73474220 73474220 A G ELN Silent p.L473L 0.06 TCGA-D9-A6EC-06 7 73530259 73530259 C T LIMK1 Missense_Mutation p.P513L 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 73933883 73933883 C T GTF2IRD1 Silent p.S282S 0.45 TCGA-D9-A6EC-06 7 75104332 75104332 G A POM121C 5'UTR 0.47 TCGA-D9-A6EC-06 7 75104333 75104333 G A POM121C 5'UTR 0.48 TCGA-D9-A6EC-06 7 76111960 76111960 A C DTX2 Missense_Mutation p.Q135P 0.19 deleterious(0.01) possibly_damaging(0.873) TCGA-D9-A6EC-06 7 76825705 76825705 C T FGL2 Missense_Mutation p.G404E 0.61 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 76825706 76825706 C T FGL2 Missense_Mutation p.G404R 0.62 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 76825741 76825741 T A FGL2 Missense_Mutation p.K392I 0.08 deleterious(0) possibly_damaging(0.905) TCGA-D9-A6EC-06 7 76826175 76826175 C T FGL2 Missense_Mutation p.M247I 0.46 tolerated(0.38) benign(0.102) TCGA-D9-A6EC-06 7 77764516 77764516 G A MAGI2 Silent p.P951P 0.43 TCGA-D9-A6EC-06 7 81600036 81600036 C T CACNA2D1 Missense_Mutation p.R720Q 0.43 tolerated(0.45) benign(0.081) TCGA-D9-A6EC-06 7 82389990 82389990 G A PCLO Nonsense_Mutation p.R5085* 0.37 TCGA-D9-A6EC-06 7 825297 825297 T C HEATR2 3'UTR 0.17 TCGA-D9-A6EC-06 7 82544154 82544154 G A PCLO Missense_Mutation p.P4383L 0.38 unknown(0) TCGA-D9-A6EC-06 7 8258081 8258081 G A ICA1 Missense_Mutation p.R145W 0.42 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 82583245 82583245 G A PCLO Missense_Mutation p.H2342Y 0.51 unknown(0) TCGA-D9-A6EC-06 7 82585599 82585599 C T PCLO Missense_Mutation p.R1557Q 0.44 unknown(0) TCGA-D9-A6EC-06 7 82784260 82784260 G A PCLO Missense_Mutation p.P566L 0.47 unknown(0) TCGA-D9-A6EC-06 7 83014733 83014733 C T SEMA3E Silent p.K584K 0.43 TCGA-D9-A6EC-06 7 83014738 83014738 C G SEMA3E Missense_Mutation p.D583H 0.43 tolerated(0.11) benign(0.004) TCGA-D9-A6EC-06 7 83021895 83021895 T C SEMA3E Missense_Mutation p.Y548C 0.19 tolerated(0.14) possibly_damaging(0.855) TCGA-D9-A6EC-06 7 83592584 83592584 C T SEMA3A Silent p.P599P 0.39 TCGA-D9-A6EC-06 7 8475376 8475376 C T NXPH1 Silent p.L11L 0.47 TCGA-D9-A6EC-06 7 86415790 86415790 G A GRM3 Missense_Mutation p.E228K 0.32 deleterious(0) possibly_damaging(0.694) TCGA-D9-A6EC-06 7 86493648 86493648 G A GRM3 Missense_Mutation p.D873N 0.28 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-D9-A6EC-06 7 87179314 87179314 G A ABCB1 Silent p.I469I 0.40 TCGA-D9-A6EC-06 7 87774494 87774494 G A ADAM22 Missense_Mutation p.D459N 0.40 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 7 883214 883214 C T SUN1 Intron 0.27 TCGA-D9-A6EC-06 7 88965357 88965357 G A ZNF804B Missense_Mutation p.D1021N 0.22 tolerated(0.08) benign(0.006) TCGA-D9-A6EC-06 7 89789117 89789117 A G STEAP1 Silent p.K5K 0.14 TCGA-D9-A6EC-06 7 89861861 89861861 G A STEAP2 Missense_Mutation p.E466K 0.25 deleterious(0.03) probably_damaging(0.927) TCGA-D9-A6EC-06 7 90741857 90741857 G A CDK14 Silent p.K367K 0.53 TCGA-D9-A6EC-06 7 90896108 90896108 C T FZD1 Missense_Mutation p.T638I 0.48 tolerated(0.33) benign(0.005) TCGA-D9-A6EC-06 7 91867004 91867004 A G KRIT1 Missense_Mutation p.F111S 0.15 deleterious(0) benign(0.362) TCGA-D9-A6EC-06 7 92763093 92763093 G A SAMD9L Missense_Mutation p.P731L 0.48 tolerated(0.08) benign(0.077) TCGA-D9-A6EC-06 7 92764132 92764132 C T SAMD9L Missense_Mutation p.G385R 0.94 tolerated(0.71) benign(0.001) TCGA-D9-A6EC-06 7 92764596 92764596 T G SAMD9L Missense_Mutation p.N230T 0.17 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 7 92848461 92848461 C T HEPACAM2 Missense_Mutation p.G128E 0.42 tolerated(0.08) probably_damaging(0.998) TCGA-D9-A6EC-06 7 92900560 92900560 T G CCDC132 Missense_Mutation p.L230V 0.10 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 7 92983057 92983057 C T CCDC132 Nonsense_Mutation p.R857* 0.42 TCGA-D9-A6EC-06 7 93098038 93098038 G A CALCR Silent p.F188F 0.35 TCGA-D9-A6EC-06 7 94034533 94034533 G A COL1A2 Missense_Mutation p.R152Q 0.64 unknown(0) TCGA-D9-A6EC-06 7 94059766 94059766 T G COL1A2 3'UTR 0.13 TCGA-D9-A6EC-06 7 94248117 94248117 T C SGCE Silent p.L205L 0.09 TCGA-D9-A6EC-06 7 94944744 94944744 A T PON1 Missense_Mutation p.L87Q 0.09 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 7 96637041 96637041 C T DLX6 Silent p.S176S 0.47 TCGA-D9-A6EC-06 7 96639302 96639302 T G DLX6 Nonsense_Mutation p.Y275* 0.30 TCGA-D9-A6EC-06 7 97369198 97369198 G A TAC1 Missense_Mutation p.R119K 0.28 tolerated(1) benign(0.004) TCGA-D9-A6EC-06 7 97823866 97823866 A G LMTK2 Silent p.T1363T 0.23 TCGA-D9-A6EC-06 7 98457846 98457846 G A TMEM130 Silent p.F169F 0.42 TCGA-D9-A6EC-06 7 98548574 98548574 C T TRRAP Missense_Mutation p.P1797S 0.37 probably_damaging(0.992) TCGA-D9-A6EC-06 7 98550939 98550939 C T TRRAP Silent p.F1864F 0.40 TCGA-D9-A6EC-06 7 99621110 99621110 A C ZKSCAN1 5'UTR 0.17 TCGA-D9-A6EC-06 7 99757468 99757468 G A GAL3ST4 3'UTR 0.42 TCGA-D9-A6EC-06 7 99965016 99965016 G A PILRB 3'UTR 0.42 TCGA-D9-A6EC-06 7 99995512 99995512 G A PILRA Silent p.R228R 0.36 TCGA-D9-A6EC-06 8 101092478 101092478 G A RGS22 Nonsense_Mutation p.Q75* 0.25 TCGA-D9-A6EC-06 8 101146573 101146573 T C FBXO43 Missense_Mutation p.E565G 0.15 deleterious(0) benign(0.045) TCGA-D9-A6EC-06 8 101153595 101153595 T C FBXO43 Missense_Mutation p.E296G 0.24 deleterious(0.01) possibly_damaging(0.59) TCGA-D9-A6EC-06 8 101237502 101237502 C A SPAG1 Missense_Mutation p.P597Q 0.49 deleterious(0.04) possibly_damaging(0.815) TCGA-D9-A6EC-06 8 101300126 101300126 T C RNF19A Missense_Mutation p.S93G 0.21 tolerated_low_confidence(0.07) benign(0.275) TCGA-D9-A6EC-06 8 101586159 101586159 T C SNX31 Silent p.R419R 0.11 TCGA-D9-A6EC-06 8 101601144 101601144 G A SNX31 Nonsense_Mutation p.Q348* 0.47 TCGA-D9-A6EC-06 8 103236285 103236285 T A RRM2B Missense_Mutation p.K180I 0.22 deleterious_low_confidence(0.03) benign(0.003) TCGA-D9-A6EC-06 8 104442916 104442916 A C DCAF13 Missense_Mutation p.K386T 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A6EC-06 8 10467099 10467099 G A RP1L1 Silent p.S1503S 0.24 TCGA-D9-A6EC-06 8 10480352 10480352 C T RP1L1 Silent p.Q120Q 0.28 TCGA-D9-A6EC-06 8 104955113 104955113 G A RIMS2 Missense_Mutation p.R887Q 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D9-A6EC-06 8 105257227 105257227 C T RIMS2 Nonsense_Mutation p.R1140* 0.49 TCGA-D9-A6EC-06 8 105361255 105361255 A C DCSTAMP Missense_Mutation p.S159R 0.20 tolerated(0.15) benign(0.009) TCGA-D9-A6EC-06 8 105367188 105367188 C T DCSTAMP Silent p.F371F 0.44 TCGA-D9-A6EC-06 8 105509498 105509498 G A LRP12 Missense_Mutation p.P428S 0.47 tolerated(0.33) probably_damaging(0.991) TCGA-D9-A6EC-06 8 105521198 105521198 T G LRP12 Silent p.R81R 0.22 TCGA-D9-A6EC-06 8 107782364 107782366 TCC CTT ABRA Missense_Mutation p.RK18QE 0.15 TCGA-D9-A6EC-06 8 107782406 107782406 C T ABRA Missense_Mutation p.E5K 0.35 deleterious_low_confidence(0.02) benign(0.024) TCGA-D9-A6EC-06 8 108334271 108334271 C T ANGPT1 Missense_Mutation p.G221S 0.56 tolerated(0.8) benign(0) TCGA-D9-A6EC-06 8 110099744 110099744 G A TRHR Translation_Start_Site p.M1? 0.45 tolerated(0.09) benign(0.029) TCGA-D9-A6EC-06 8 110477198 110477198 C T PKHD1L1 Missense_Mutation p.L2713F 0.38 deleterious(0.04) benign(0.352) TCGA-D9-A6EC-06 8 110492318 110492318 G A PKHD1L1 Missense_Mutation p.E3093K 0.33 tolerated(0.67) benign(0.002) TCGA-D9-A6EC-06 8 110510963 110510963 G A PKHD1L1 Missense_Mutation p.M3597I 0.16 tolerated(0.09) benign(0.057) TCGA-D9-A6EC-06 8 113267620 113267620 C T CSMD3 Missense_Mutation p.G3300E 0.42 deleterious(0) possibly_damaging(0.544) TCGA-D9-A6EC-06 8 113651089 113651089 A G CSMD3 Missense_Mutation p.L1121S 0.30 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 8 113657364 113657364 C T CSMD3 Nonsense_Mutation p.W1095* 0.75 TCGA-D9-A6EC-06 8 114185969 114185969 G A CSMD3 Missense_Mutation p.P231S 0.50 deleterious(0.03) possibly_damaging(0.794) TCGA-D9-A6EC-06 8 116426936 116426936 G A TRPS1 Missense_Mutation p.S1067F 0.19 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-D9-A6EC-06 8 118159241 118159241 G A SLC30A8 Silent p.E40E 0.22 TCGA-D9-A6EC-06 8 118170031 118170031 C T SLC30A8 Nonsense_Mutation p.Q174* 0.55 TCGA-D9-A6EC-06 8 118184802 118184802 G A SLC30A8 Missense_Mutation p.R331Q 0.50 tolerated(0.05) benign(0.028) TCGA-D9-A6EC-06 8 118811843 118811843 G A EXT1 3'UTR 0.35 TCGA-D9-A6EC-06 8 11994844 11994844 T C USP17L2 Missense_Mutation p.K476E 0.12 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 8 120118181 120118181 C T COLEC10 Silent p.I195I 0.41 TCGA-D9-A6EC-06 8 120816119 120816119 T G TAF2 Silent p.R187R 0.19 TCGA-D9-A6EC-06 8 121220504 121220504 T C COL14A1 Silent p.L409L 0.44 TCGA-D9-A6EC-06 8 121328193 121328193 G A COL14A1 Missense_Mutation p.G1539E 0.52 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 121379409 121379409 G A COL14A1 Splice_Site p.X1693_splice 0.47 TCGA-D9-A6EC-06 8 123963831 123963831 A G ZHX2 Silent p.V27V 0.18 TCGA-D9-A6EC-06 8 123964578 123964578 G A ZHX2 Silent p.T276T 0.24 TCGA-D9-A6EC-06 8 124204126 124204126 C T FAM83A Silent p.F188F 0.47 TCGA-D9-A6EC-06 8 124267940 124267940 T G ZHX1 Missense_Mutation p.N83H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 8 125103704 125103704 G A FER1L6 Missense_Mutation p.E1478K 0.38 deleterious(0.01) possibly_damaging(0.797) TCGA-D9-A6EC-06 8 125109542 125109542 C T FER1L6 Missense_Mutation p.P1576S 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 125531096 125531096 T C TATDN1 Silent p.Q55Q 0.08 TCGA-D9-A6EC-06 8 12870265 12870265 T A KIAA1456 Missense_Mutation p.L76Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 8 130761731 130761731 C T GSDMC Missense_Mutation p.M418I 0.52 deleterious(0.02) benign(0.153) TCGA-D9-A6EC-06 8 130761734 130761734 G A GSDMC Silent p.S417S 0.47 TCGA-D9-A6EC-06 8 130764114 130764114 G A GSDMC Missense_Mutation p.P304S 0.43 tolerated(0.68) benign(0.024) TCGA-D9-A6EC-06 8 130789736 130789736 A C GSDMC Nonsense_Mutation p.L33* 0.20 TCGA-D9-A6EC-06 8 131833595 131833595 C T ADCY8 Missense_Mutation p.G916E 0.53 tolerated(0.05) probably_damaging(0.982) TCGA-D9-A6EC-06 8 131861860 131861860 G T ADCY8 Silent p.A800A 0.45 TCGA-D9-A6EC-06 8 131880121 131880121 C T ADCY8 Silent p.T727T 0.24 TCGA-D9-A6EC-06 8 133044234 133044234 C T OC90 Missense_Mutation p.G309R 0.35 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 8 133053843 133053843 G A OC90 Silent p.P91P 0.66 TCGA-D9-A6EC-06 8 133153407 133153407 C T KCNQ3 Missense_Mutation p.M478I 0.42 tolerated(0.74) possibly_damaging(0.831) TCGA-D9-A6EC-06 8 133627303 133627303 G A LRRC6 Silent p.L319L 0.51 TCGA-D9-A6EC-06 8 133899151 133899151 G A TG Missense_Mutation p.G512R 0.51 tolerated(0.15) benign(0.025) TCGA-D9-A6EC-06 8 134024257 134024257 C T TG Missense_Mutation p.A2125V 0.40 tolerated(0.21) benign(0.004) TCGA-D9-A6EC-06 8 135545108 135545108 C T ZFAT Silent p.G1028G 0.57 TCGA-D9-A6EC-06 8 135602508 135602508 T A ZFAT Intron 0.32 TCGA-D9-A6EC-06 8 135612653 135612653 G A ZFAT Intron 0.42 TCGA-D9-A6EC-06 8 139153532 139153532 G A FAM135B Silent p.F1233F 0.28 TCGA-D9-A6EC-06 8 139165308 139165308 C T FAM135B Missense_Mutation p.M470I 0.56 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 8 139209796 139209796 G A FAM135B Silent p.I262I 0.56 TCGA-D9-A6EC-06 8 139278020 139278020 A G FAM135B Silent p.L75L 0.21 TCGA-D9-A6EC-06 8 13959889 13959889 C T SGCZ Missense_Mutation p.G247E 0.56 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 139606370 139606370 G T COL22A1 Missense_Mutation p.P1502Q 0.18 unknown(0) TCGA-D9-A6EC-06 8 139890205 139890205 A G COL22A1 Missense_Mutation p.L149P 0.27 unknown(0) TCGA-D9-A6EC-06 8 139890223 139890223 T A COL22A1 Missense_Mutation p.K143M 0.25 unknown(0) TCGA-D9-A6EC-06 8 142190900 142190900 C T DENND3 Missense_Mutation p.P884L 0.23 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 142221843 142221843 T C SLC45A4 Intron 0.15 TCGA-D9-A6EC-06 8 142227244 142227244 G A SLC45A4 Silent p.V507V 0.46 TCGA-D9-A6EC-06 8 142227281 142227281 G T SLC45A4 Nonsense_Mutation p.S495* 0.63 TCGA-D9-A6EC-06 8 142228773 142228773 G T SLC45A4 Silent p.P271P 0.51 TCGA-D9-A6EC-06 8 142228774 142228774 G A SLC45A4 Missense_Mutation p.P271L 0.50 deleterious(0) benign(0.358) TCGA-D9-A6EC-06 8 143784630 143784630 C T LY6K Silent p.L113L 0.23 TCGA-D9-A6EC-06 8 143846001 143846001 G A LYNX1 3'UTR 0.62 TCGA-D9-A6EC-06 8 143846518 143846518 G A LYNX1 Silent p.F65F 0.59 TCGA-D9-A6EC-06 8 143960473 143960473 C T CYP11B1 Missense_Mutation p.G124R 0.43 tolerated(0.16) possibly_damaging(0.651) TCGA-D9-A6EC-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.51 deleterious(0) probably_damaging(0.933) TCGA-D9-A6EC-06 8 144522251 144522251 G A ZC3H3 Silent p.P925P 0.16 TCGA-D9-A6EC-06 8 144618540 144618540 C T ZC3H3 Missense_Mutation p.R483K 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-D9-A6EC-06 8 144803008 144803008 G A MAPK15 Silent p.Q305Q 0.38 TCGA-D9-A6EC-06 8 144994914 144994914 G A PLEC Silent p.V3162V 0.39 TCGA-D9-A6EC-06 8 145052077 145052077 T C PARP10 Missense_Mutation p.N910S 0.12 deleterious(0.03) possibly_damaging(0.792) TCGA-D9-A6EC-06 8 145540343 145540343 A G DGAT1 Silent p.F447F 0.14 TCGA-D9-A6EC-06 8 145620651 145620651 T G CPSF1 Missense_Mutation p.K1032T 0.15 deleterious(0) possibly_damaging(0.451) TCGA-D9-A6EC-06 8 145640663 145640663 G A SLC39A4 Silent p.F205F 0.32 TCGA-D9-A6EC-06 8 145662197 145662197 G A TONSL Silent p.F611F 0.48 TCGA-D9-A6EC-06 8 145724214 145724214 C A PPP1R16A Silent p.A107A 0.46 TCGA-D9-A6EC-06 8 145756164 145756164 G A ARHGAP39 Silent p.P1024P 0.20 TCGA-D9-A6EC-06 8 145756165 145756165 G A ARHGAP39 Missense_Mutation p.P1024L 0.20 deleterious(0) benign(0.245) TCGA-D9-A6EC-06 8 145947219 145947219 A C ZNF251 Missense_Mutation p.L609R 0.21 deleterious(0) benign(0) TCGA-D9-A6EC-06 8 145948088 145948088 T A ZNF251 Missense_Mutation p.K319N 0.21 deleterious(0) possibly_damaging(0.461) TCGA-D9-A6EC-06 8 1497108 1497108 G A DLGAP2 Silent p.R83R 0.59 TCGA-D9-A6EC-06 8 15998385 15998385 G A MSR1 Intron 0.48 TCGA-D9-A6EC-06 8 16026296 16026296 C T MSR1 Missense_Mutation p.G101R 0.37 tolerated(0.2) benign(0.027) TCGA-D9-A6EC-06 8 16032769 16032769 G A MSR1 Silent p.S48S 0.27 TCGA-D9-A6EC-06 8 16035410 16035410 C T MSR1 Missense_Mutation p.A30T 0.51 tolerated(0.35) benign(0.125) TCGA-D9-A6EC-06 8 17447073 17447073 A T PDGFRL Missense_Mutation p.K51I 0.20 deleterious(0.02) benign(0.139) TCGA-D9-A6EC-06 8 17827233 17827233 C T PCM1 Missense_Mutation p.S1187F 0.30 deleterious(0) probably_damaging(0.982) TCGA-D9-A6EC-06 8 1871721 1871721 T A ARHGEF10 Missense_Mutation p.C783S 0.16 tolerated(0.09) benign(0.363) TCGA-D9-A6EC-06 8 18730123 18730123 A G PSD3 Missense_Mutation p.L84P 0.26 tolerated_low_confidence(0.14) benign(0.006) TCGA-D9-A6EC-06 8 19679971 19679971 T G INTS10 Missense_Mutation p.L155V 0.14 tolerated(0.12) benign(0.187) TCGA-D9-A6EC-06 8 19682404 19682404 A G INTS10 Silent p.Q309Q 0.09 TCGA-D9-A6EC-06 8 21827781 21827781 T A XPO7 Missense_Mutation p.V129D 0.11 tolerated(0.11) benign(0.254) TCGA-D9-A6EC-06 8 22081824 22081824 C T PHYHIP Missense_Mutation p.E125K 0.47 tolerated(0.46) benign(0.008) TCGA-D9-A6EC-06 8 22145065 22145065 G A PIWIL2 Missense_Mutation p.M256I 0.41 tolerated(0.1) benign(0.05) TCGA-D9-A6EC-06 8 22167505 22167505 T G PIWIL2 Missense_Mutation p.I573S 0.35 deleterious(0) probably_damaging(0.955) TCGA-D9-A6EC-06 8 22355618 22355618 A G PPP3CC Silent p.K159K 0.18 TCGA-D9-A6EC-06 8 22432396 22432396 C T SORBS3 3'UTR 0.33 TCGA-D9-A6EC-06 8 22473546 22473546 T C CCAR2 Missense_Mutation p.F544L 0.11 deleterious(0) probably_damaging(0.986) TCGA-D9-A6EC-06 8 22547968 22547968 G A EGR3 3'UTR 0.64 TCGA-D9-A6EC-06 8 23049245 23049245 A C TNFRSF10A Missense_Mutation p.L457V 0.23 tolerated(0.09) benign(0.007) TCGA-D9-A6EC-06 8 23049419 23049419 C T TNFRSF10A Missense_Mutation p.A399T 0.41 tolerated(0.08) possibly_damaging(0.591) TCGA-D9-A6EC-06 8 23198683 23198683 G A LOXL2 Nonsense_Mutation p.R189* 0.44 TCGA-D9-A6EC-06 8 23290646 23290646 G A ENTPD4 Silent p.F548F 0.40 TCGA-D9-A6EC-06 8 23429207 23429207 T G SLC25A37 Missense_Mutation p.F286V 0.17 tolerated(0.25) benign(0.017) TCGA-D9-A6EC-06 8 24178848 24178848 G A ADAM28 Intron 0.13 TCGA-D9-A6EC-06 8 24350574 24350574 G A ADAM7 Silent p.K558K 0.47 TCGA-D9-A6EC-06 8 24774687 24774687 A C NEFM Missense_Mutation p.K440T 0.23 deleterious(0.02) unknown(0) TCGA-D9-A6EC-06 8 24774743 24774743 G A NEFM Missense_Mutation p.E459K 0.34 deleterious(0.05) unknown(0) TCGA-D9-A6EC-06 8 24813375 24813375 C T CTD-2168K21.2 5'Flank 0.46 TCGA-D9-A6EC-06 8 25168014 25168014 C T DOCK5 Silent p.A428A 0.15 TCGA-D9-A6EC-06 8 25168015 25168015 C T DOCK5 Missense_Mutation p.R429W 0.16 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 25718616 25718616 C T EBF2 Missense_Mutation p.G431S 0.44 tolerated_low_confidence(1) benign(0.111) TCGA-D9-A6EC-06 8 26212087 26212087 A T PPP2R2A Missense_Mutation p.K105M 0.14 deleterious(0) probably_damaging(0.977) TCGA-D9-A6EC-06 8 26223885 26223885 T G PPP2R2A Missense_Mutation p.F353V 0.06 deleterious(0.01) benign(0.368) TCGA-D9-A6EC-06 8 26238068 26238068 T A BNIP3L 5'Flank 0.12 TCGA-D9-A6EC-06 8 26365052 26365052 G A PNMA2 3'UTR 0.53 TCGA-D9-A6EC-06 8 27401307 27401307 C T EPHX2 Silent p.F497F 0.27 TCGA-D9-A6EC-06 8 27455731 27455731 C T CLU 3'UTR 0.52 TCGA-D9-A6EC-06 8 27468144 27468144 G A CLU Intron 0.22 TCGA-D9-A6EC-06 8 27657095 27657095 C T ESCO2 Missense_Mutation p.S512F 0.48 deleterious(0) possibly_damaging(0.624) TCGA-D9-A6EC-06 8 2806893 2806893 C T CSMD1 Missense_Mutation p.E3444K 0.45 possibly_damaging(0.493) TCGA-D9-A6EC-06 8 28574883 28574883 C T EXTL3 Missense_Mutation p.P436L 0.56 deleterious(0) benign(0.363) TCGA-D9-A6EC-06 8 28575715 28575715 C T EXTL3 Silent p.V713V 0.41 TCGA-D9-A6EC-06 8 28625543 28625543 T G INTS9 3'UTR 0.16 TCGA-D9-A6EC-06 8 3019712 3019712 G A CSMD1 Missense_Mutation p.S1938F 0.47 benign(0.25) TCGA-D9-A6EC-06 8 30210090 30210090 C T TUBBP1 RNA 0.23 TCGA-D9-A6EC-06 8 30469914 30469914 G A GTF2E2 Silent p.L151L 0.53 TCGA-D9-A6EC-06 8 30469915 30469915 G A GTF2E2 Silent p.A150A 0.54 TCGA-D9-A6EC-06 8 30560632 30560632 G A GSR Silent p.T206T 0.40 TCGA-D9-A6EC-06 8 30699538 30699538 G A TEX15 Silent p.S2332S 0.37 TCGA-D9-A6EC-06 8 30702494 30702494 C T TEX15 Missense_Mutation p.G1347E 0.48 tolerated(1) benign(0.022) TCGA-D9-A6EC-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.41 tolerated(1) benign(0.002) TCGA-D9-A6EC-06 8 30705338 30705338 A C TEX15 Missense_Mutation p.V399G 0.23 deleterious(0.03) possibly_damaging(0.59) TCGA-D9-A6EC-06 8 3165973 3165973 C T CSMD1 Silent p.R1228R 0.49 TCGA-D9-A6EC-06 8 3216839 3216839 C T CSMD1 Missense_Mutation p.D1047N 0.32 probably_damaging(0.999) TCGA-D9-A6EC-06 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.46 probably_damaging(0.999) TCGA-D9-A6EC-06 8 33354259 33354259 A C MAK16 Missense_Mutation p.E213D 0.27 tolerated(0.36) benign(0.032) TCGA-D9-A6EC-06 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.33 probably_damaging(0.912) TCGA-D9-A6EC-06 8 35402013 35402013 T C UNC5D Intron 0.23 TCGA-D9-A6EC-06 8 38003966 38003966 C T STAR Splice_Site p.X103_splice 0.15 TCGA-D9-A6EC-06 8 38092097 38092097 T G DDHD2 Missense_Mutation p.L136V 0.16 deleterious(0) benign(0.048) TCGA-D9-A6EC-06 8 38258410 38258410 C T LETM2 Missense_Mutation p.R228C 0.42 deleterious(0) benign(0.102) TCGA-D9-A6EC-06 8 38700805 38700805 A T TACC1 Splice_Site p.X708_splice 0.18 TCGA-D9-A6EC-06 8 38831811 38831811 G A HTRA4 Missense_Mutation p.G10E 0.49 tolerated_low_confidence(0.13) benign(0.003) TCGA-D9-A6EC-06 8 39022606 39022606 G A ADAM32 Missense_Mutation p.E242K 0.44 tolerated(1) benign(0.005) TCGA-D9-A6EC-06 8 39142348 39142348 C T ADAM32 3'UTR 0.43 TCGA-D9-A6EC-06 8 39494786 39494786 G A ADAM18 Missense_Mutation p.D198N 0.30 tolerated(0.09) probably_damaging(0.995) TCGA-D9-A6EC-06 8 39494811 39494811 C T ADAM18 Missense_Mutation p.A206V 0.11 tolerated(1) benign(0.097) TCGA-D9-A6EC-06 8 39505984 39505984 C T ADAM18 Nonsense_Mutation p.Q390* 0.42 TCGA-D9-A6EC-06 8 39587475 39587475 C T ADAM18 3'UTR 0.51 TCGA-D9-A6EC-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.52 TCGA-D9-A6EC-06 8 39645725 39645725 G A ADAM2 Missense_Mutation p.L230F 0.15 tolerated(0.39) benign(0.12) TCGA-D9-A6EC-06 8 39780167 39780167 C T IDO1 Silent p.I178I 0.43 TCGA-D9-A6EC-06 8 39845455 39845455 C A IDO2 Missense_Mutation p.A185D 0.55 deleterious(0) benign(0.183) TCGA-D9-A6EC-06 8 41397211 41397211 C T GINS4 Silent p.F104F 0.32 TCGA-D9-A6EC-06 8 41399594 41399594 C T GINS4 Silent p.V220V 0.40 TCGA-D9-A6EC-06 8 41399595 41399595 C T GINS4 Nonsense_Mutation p.Q221* 0.39 TCGA-D9-A6EC-06 8 42026493 42026493 C T AP3M2 Missense_Mutation p.R391C 0.39 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 8 42046553 42046553 T A PLAT Missense_Mutation p.Q51L 0.25 tolerated(0.27) benign(0.005) TCGA-D9-A6EC-06 8 42585795 42585795 T G CHRNB3 Missense_Mutation p.I103S 0.14 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EC-06 8 42978010 42978010 A G POMK Missense_Mutation p.E348G 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D9-A6EC-06 8 48772229 48772229 C T PRKDC Silent p.Q2049Q 0.23 TCGA-D9-A6EC-06 8 51362225 51362225 C T SNTG1 Intron 0.20 TCGA-D9-A6EC-06 8 52325713 52325713 G A PXDNL Missense_Mutation p.S634L 0.55 deleterious(0.02) benign(0.147) TCGA-D9-A6EC-06 8 53045673 53045673 C T ST18 Silent p.R796R 0.41 TCGA-D9-A6EC-06 8 54141851 54141851 G A OPRK1 3'UTR 0.44 TCGA-D9-A6EC-06 8 54628456 54628456 T G ATP6V1H 3'UTR 0.57 TCGA-D9-A6EC-06 8 55534134 55534134 G A RP1 Missense_Mutation p.G203E 0.40 deleterious(0.01) possibly_damaging(0.873) TCGA-D9-A6EC-06 8 55539494 55539494 G A RP1 Missense_Mutation p.V1018I 0.24 tolerated(0.2) benign(0.084) TCGA-D9-A6EC-06 8 55539917 55539917 G A RP1 Missense_Mutation p.E1159K 0.24 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 8 55540667 55540667 G A RP1 Missense_Mutation p.E1409K 0.41 deleterious(0.01) benign(0.043) TCGA-D9-A6EC-06 8 55541013 55541013 T A RP1 Missense_Mutation p.I1524N 0.49 deleterious(0.02) possibly_damaging(0.467) TCGA-D9-A6EC-06 8 55542905 55542905 G A RP1 Missense_Mutation p.D2155N 0.21 tolerated(0.09) possibly_damaging(0.732) TCGA-D9-A6EC-06 8 57353786 57353786 G A PENK 3'UTR 0.43 TCGA-D9-A6EC-06 8 59058985 59058985 G A FAM110B Missense_Mutation p.E66K 0.50 tolerated(0.09) possibly_damaging(0.621) TCGA-D9-A6EC-06 8 61749451 61749451 T C CHD7 Silent p.P1355P 0.25 TCGA-D9-A6EC-06 8 62212614 62212614 C T CLVS1 Silent p.I76I 0.45 TCGA-D9-A6EC-06 8 62555453 62555453 C T ASPH Missense_Mutation p.E262K 0.25 tolerated_low_confidence(0.34) benign(0.02) TCGA-D9-A6EC-06 8 63978601 63978601 G A TTPA Silent p.I138I 0.32 TCGA-D9-A6EC-06 8 65528704 65528704 G A CYP7B1 Missense_Mutation p.H132Y 0.42 deleterious(0.03) possibly_damaging(0.453) TCGA-D9-A6EC-06 8 6679414 6679414 T A XKR5 RNA 0.35 TCGA-D9-A6EC-06 8 6681182 6681182 G A XKR5 RNA 0.38 TCGA-D9-A6EC-06 8 67049333 67049333 G A TRIM55 Missense_Mutation p.E171K 0.50 deleterious(0.03) probably_damaging(0.98) TCGA-D9-A6EC-06 8 6783525 6783525 G A DEFA6 Silent p.L11L 0.47 TCGA-D9-A6EC-06 8 68255580 68255580 G A ARFGEF1 5'UTR 0.43 TCGA-D9-A6EC-06 8 68968077 68968077 G A PREX2 Missense_Mutation p.G369E 0.52 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 8 6913002 6913002 G A DEFA5 Missense_Mutation p.S79F 0.33 tolerated(0.71) benign(0.007) TCGA-D9-A6EC-06 8 70476234 70476234 G A SULF1 Silent p.L8L 0.39 TCGA-D9-A6EC-06 8 70498678 70498678 C T SULF1 Missense_Mutation p.R167C 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 8 71499184 71499184 A T TRAM1 Missense_Mutation p.F231Y 0.16 deleterious(0.02) probably_damaging(0.944) TCGA-D9-A6EC-06 8 72127915 72127915 T G EYA1 Missense_Mutation p.E470A 0.29 deleterious(0.02) benign(0.19) TCGA-D9-A6EC-06 8 72128980 72128980 A G EYA1 Missense_Mutation p.F436S 0.24 deleterious(0) benign(0.298) TCGA-D9-A6EC-06 8 72951155 72951155 T G TRPA1 Missense_Mutation p.N747T 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-D9-A6EC-06 8 73480509 73480509 G A KCNB2 Nonsense_Mutation p.W180* 0.21 TCGA-D9-A6EC-06 8 73480510 73480510 G A KCNB2 Missense_Mutation p.D181N 0.21 tolerated(0.07) benign(0.046) TCGA-D9-A6EC-06 8 73480513 73480513 T C KCNB2 Silent p.L182L 0.48 TCGA-D9-A6EC-06 8 73848501 73848501 G A KCNB2 Missense_Mutation p.R304Q 0.53 deleterious(0.02) probably_damaging(0.988) TCGA-D9-A6EC-06 8 73850100 73850100 A C KCNB2 Missense_Mutation p.K837T 0.19 tolerated_low_confidence(0.24) benign(0.002) TCGA-D9-A6EC-06 8 75757661 75757661 T G PI15 Silent p.T190T 0.08 TCGA-D9-A6EC-06 8 77765586 77765586 C T ZFHX4 Silent p.I2143I 0.27 TCGA-D9-A6EC-06 8 80567146 80567146 G A STMN2 Missense_Mutation p.R110K 0.42 deleterious(0.02) probably_damaging(0.993) TCGA-D9-A6EC-06 8 80567154 80567154 G A STMN2 Missense_Mutation p.E113K 0.50 deleterious(0.04) probably_damaging(0.973) TCGA-D9-A6EC-06 8 86574520 86574520 C T REXO1L1P Missense_Mutation p.G403R 0.50 tolerated(0.39) benign(0.032) TCGA-D9-A6EC-06 8 87060724 87060724 C T PSKH2 Silent p.R375R 0.44 TCGA-D9-A6EC-06 8 87162450 87162450 A - ATP6V0D2 Frame_Shift_Del p.E250Gfs*15 0.14 TCGA-D9-A6EC-06 8 87568537 87568537 C T CPNE3 Nonsense_Mutation p.Q488* 0.45 TCGA-D9-A6EC-06 8 87738771 87738771 T G CNGB3 Missense_Mutation p.E109A 0.52 tolerated(0.14) benign(0.114) TCGA-D9-A6EC-06 8 90937285 90937285 A C OSGIN2 Missense_Mutation p.K392T 0.29 tolerated(0.64) benign(0.039) TCGA-D9-A6EC-06 8 92999130 92999130 C T RUNX1T1 Nonsense_Mutation p.W365* 0.42 TCGA-D9-A6EC-06 8 93026836 93026836 T C RUNX1T1 Missense_Mutation p.R158G 0.23 deleterious(0) possibly_damaging(0.449) TCGA-D9-A6EC-06 8 94746174 94746174 G A RBM12B Missense_Mutation p.P822L 0.43 tolerated_low_confidence(0.29) probably_damaging(0.981) TCGA-D9-A6EC-06 8 94746175 94746175 G A RBM12B Missense_Mutation p.P822S 0.45 tolerated_low_confidence(0.37) probably_damaging(0.968) TCGA-D9-A6EC-06 8 95172247 95172247 C T CDH17 Silent p.G501G 0.52 TCGA-D9-A6EC-06 8 95189878 95189878 C T CDH17 Silent p.R74R 0.41 TCGA-D9-A6EC-06 8 95523743 95523743 G A KIAA1429 Silent p.L1020L 0.54 TCGA-D9-A6EC-06 8 95869061 95869061 C T INTS8 Silent p.F603F 0.46 TCGA-D9-A6EC-06 8 96070077 96070077 A C NDUFAF6 Missense_Mutation p.D305A 0.21 deleterious(0) possibly_damaging(0.904) TCGA-D9-A6EC-06 8 99718719 99718719 A C STK3 Silent p.P248P 0.17 TCGA-D9-A6EC-06 8 99961249 99961249 C T OSR2 Silent p.F23F 0.17 TCGA-D9-A6EC-06 9 100689639 100689639 G A HEMGN 3'UTR 0.59 TCGA-D9-A6EC-06 9 100689676 100689676 A G HEMGN Missense_Mutation p.V482A 0.40 tolerated(0.15) benign(0.001) TCGA-D9-A6EC-06 9 100692633 100692633 A C HEMGN Missense_Mutation p.H348Q 0.08 tolerated(0.39) benign(0) TCGA-D9-A6EC-06 9 100840622 100840622 T C NANS Missense_Mutation p.V199A 0.11 deleterious(0.01) benign(0.185) TCGA-D9-A6EC-06 9 100897173 100897173 A C CORO2A Missense_Mutation p.L128R 0.27 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 9 101907094 101907094 T C TGFBR1 Silent p.L352L 0.20 TCGA-D9-A6EC-06 9 102609723 102609723 A C NR4A3 Missense_Mutation p.N498H 0.22 tolerated(0.06) benign(0.011) TCGA-D9-A6EC-06 9 102713377 102713377 T G STX17 Silent p.L75L 0.12 TCGA-D9-A6EC-06 9 103348442 103348442 T G MURC Silent p.A268A 0.33 TCGA-D9-A6EC-06 9 104079749 104079749 G A LPPR1 Missense_Mutation p.E306K 0.36 deleterious(0.01) benign(0.192) TCGA-D9-A6EC-06 9 104309240 104309240 C T RNF20 Silent p.L296L 0.34 TCGA-D9-A6EC-06 9 104432545 104432545 A T GRIN3A Missense_Mutation p.S717T 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-D9-A6EC-06 9 104432870 104432870 C T GRIN3A Nonsense_Mutation p.W608* 0.54 TCGA-D9-A6EC-06 9 104448901 104448901 G A GRIN3A Silent p.L427L 0.23 TCGA-D9-A6EC-06 9 104449433 104449433 G A GRIN3A Missense_Mutation p.A250V 0.54 tolerated(0.27) possibly_damaging(0.804) TCGA-D9-A6EC-06 9 105767487 105767487 G A CYLC2 Missense_Mutation p.D192N 0.12 tolerated(0.08) unknown(0) TCGA-D9-A6EC-06 9 107288595 107288595 C T OR13C4 Missense_Mutation p.R299K 0.60 deleterious(0.02) benign(0.2) TCGA-D9-A6EC-06 9 107289149 107289149 G A OR13C4 Silent p.L114L 0.29 TCGA-D9-A6EC-06 9 107360756 107360756 T G OR13C5 Missense_Mutation p.R313S 0.26 deleterious(0.03) benign(0.015) TCGA-D9-A6EC-06 9 107457109 107457109 C T OR13D1 Missense_Mutation p.S136F 0.58 deleterious(0.05) probably_damaging(0.954) TCGA-D9-A6EC-06 9 107457658 107457658 C T OR13D1 Missense_Mutation p.P319L 0.29 deleterious(0) benign(0.216) TCGA-D9-A6EC-06 9 107586827 107586827 G A ABCA1 Missense_Mutation p.P859S 0.26 deleterious(0.01) probably_damaging(0.953) TCGA-D9-A6EC-06 9 111698619 111698619 C T FAM206A Missense_Mutation p.P55S 0.23 deleterious(0) benign(0.081) TCGA-D9-A6EC-06 9 112225680 112225680 A T PTPN3 Missense_Mutation p.I12N 0.19 tolerated(0.15) probably_damaging(0.999) TCGA-D9-A6EC-06 9 112705477 112705477 C T PALM2 Silent p.I336I 0.31 TCGA-D9-A6EC-06 9 112963165 112963165 C T C9orf152 3'UTR 0.46 TCGA-D9-A6EC-06 9 113169003 113169003 G A SVEP1 Silent p.F2959F 0.25 TCGA-D9-A6EC-06 9 113212427 113212427 C T SVEP1 Missense_Mutation p.G1339S 0.60 probably_damaging(1) TCGA-D9-A6EC-06 9 113312327 113312327 C T SVEP1 Missense_Mutation p.G197R 0.57 probably_damaging(1) TCGA-D9-A6EC-06 9 114090581 114090581 G A OR2K2 Missense_Mutation p.L45F 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 9 115759741 115759741 A G ZNF883 RNA 0.64 TCGA-D9-A6EC-06 9 116080791 116080791 C T WDR31 Missense_Mutation p.D303N 0.28 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 9 116750725 116750725 G A ZNF618 Missense_Mutation p.D68N 0.21 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D9-A6EC-06 9 116836410 116836410 G A AMBP Silent p.S120S 0.40 TCGA-D9-A6EC-06 9 116836411 116836411 G A AMBP Missense_Mutation p.S120F 0.40 deleterious(0) probably_damaging(0.914) TCGA-D9-A6EC-06 9 117085953 117085953 A C ORM1 Missense_Mutation p.K42T 0.08 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 9 117087335 117087335 A C ORM1 Missense_Mutation p.K148T 0.20 tolerated(0.16) benign(0.144) TCGA-D9-A6EC-06 9 117168927 117168927 G A DFNB31 Silent p.S648S 0.33 TCGA-D9-A6EC-06 9 118950202 118950202 G A PAPPA Silent p.L395L 0.27 TCGA-D9-A6EC-06 9 118982235 118982235 C T PAPPA Silent p.S646S 0.66 TCGA-D9-A6EC-06 9 119115018 119115018 G A PAPPA Missense_Mutation p.G1333E 0.55 deleterious(0.02) probably_damaging(0.982) TCGA-D9-A6EC-06 9 119976675 119976675 C T ASTN2 Missense_Mutation p.G326E 0.65 tolerated_low_confidence(0.07) unknown(0) TCGA-D9-A6EC-06 9 120475728 120475728 C T TLR4 Missense_Mutation p.S441L 0.31 deleterious(0) probably_damaging(0.993) TCGA-D9-A6EC-06 9 120476909 120476909 G A TLR4 Missense_Mutation p.E835K 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-D9-A6EC-06 9 123165271 123165271 G A CDK5RAP2 Missense_Mutation p.P1707L 0.53 tolerated(0.35) probably_damaging(0.982) TCGA-D9-A6EC-06 9 123182166 123182166 G A CDK5RAP2 Silent p.L1359L 0.48 TCGA-D9-A6EC-06 9 123202104 123202104 G A CDK5RAP2 Nonsense_Mutation p.Q1099* 0.67 TCGA-D9-A6EC-06 9 123595596 123595596 A C PSMD5 Silent p.L104L 0.57 TCGA-D9-A6EC-06 9 123907603 123907603 A C CNTRL Missense_Mutation p.M1084L 0.17 benign(0.009) TCGA-D9-A6EC-06 9 125273215 125273215 C T OR1J2 Silent p.I45I 0.67 TCGA-D9-A6EC-06 9 125282315 125282315 G A OR1J4 Missense_Mutation p.G299E 0.23 tolerated_low_confidence(0.19) benign(0.033) TCGA-D9-A6EC-06 9 125315890 125315890 C T OR1N2 Missense_Mutation p.H148Y 0.36 deleterious(0.04) benign(0) TCGA-D9-A6EC-06 9 125377355 125377355 C T OR1Q1 Silent p.F113F 0.60 TCGA-D9-A6EC-06 9 125391484 125391484 C T OR1B1 Missense_Mutation p.V111I 0.71 tolerated(0.46) benign(0.158) TCGA-D9-A6EC-06 9 125424132 125424132 C T OR1L1 Silent p.I46I 0.28 TCGA-D9-A6EC-06 9 125437535 125437535 C T OR1L3 Silent p.L43L 0.20 TCGA-D9-A6EC-06 9 125487000 125487000 C T OR1L4 Silent p.S244S 0.29 TCGA-D9-A6EC-06 9 126129588 126129588 T G CRB2 Missense_Mutation p.F298V 0.19 deleterious(0.04) unknown(0) TCGA-D9-A6EC-06 9 126134536 126134536 G A CRB2 Silent p.G839G 0.62 TCGA-D9-A6EC-06 9 127101922 127101922 C T NEK6 Missense_Mutation p.S266F 0.30 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 9 127101923 127101923 C T NEK6 Silent p.S266S 0.30 TCGA-D9-A6EC-06 9 127245121 127245121 C T NR5A1 Silent p.K434K 0.45 TCGA-D9-A6EC-06 9 127262763 127262763 C T NR5A1 Missense_Mutation p.G159E 0.58 tolerated(0.3) benign(0.184) TCGA-D9-A6EC-06 9 127549387 127549387 A C OLFML2A Missense_Mutation p.Y75S 0.09 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 9 127549429 127549429 C T OLFML2A Missense_Mutation p.S89F 0.61 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 9 127619030 127619030 A C WDR38 Missense_Mutation p.K213T 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-D9-A6EC-06 9 127933417 127933417 T G PPP6C Missense_Mutation p.N77H 0.21 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 9 127951860 127951860 A T PPP6C Silent p.L46L 0.27 TCGA-D9-A6EC-06 9 129642466 129642466 C T ZBTB34 Missense_Mutation p.T259I 0.34 tolerated(0.11) probably_damaging(0.917) TCGA-D9-A6EC-06 9 130074013 130074013 A C GARNL3 Missense_Mutation p.Q106H 0.16 tolerated(0.05) possibly_damaging(0.553) TCGA-D9-A6EC-06 9 130162257 130162257 C T SLC2A8 Silent p.V166V 0.24 TCGA-D9-A6EC-06 9 130269290 130269290 G A FAM129B Missense_Mutation p.S692L 0.44 tolerated_low_confidence(0.15) benign(0.007) TCGA-D9-A6EC-06 9 130496741 130496741 T G TOR2A Missense_Mutation p.K85T 0.26 deleterious(0) probably_damaging(0.969) TCGA-D9-A6EC-06 9 130536540 130536540 G A SH2D3C Missense_Mutation p.R82C 0.33 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 9 130550563 130550563 T C CDK9 Missense_Mutation p.F168S 0.11 deleterious(0) probably_damaging(0.997) TCGA-D9-A6EC-06 9 130578255 130578255 T C ENG Missense_Mutation p.T607A 0.22 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 9 130985128 130985128 C T DNM1 Silent p.I395I 0.34 TCGA-D9-A6EC-06 9 131048398 131048398 C T SWI5 Intron 0.45 TCGA-D9-A6EC-06 9 131105503 131105503 T C SLC27A4 Missense_Mutation p.F31S 0.16 tolerated(0.36) benign(0.024) TCGA-D9-A6EC-06 9 131255047 131255047 A C ODF2 Missense_Mutation p.K572T 0.44 deleterious(0.01) benign(0.099) TCGA-D9-A6EC-06 9 131256878 131256878 A C ODF2 Missense_Mutation p.Q614H 0.17 tolerated(0.18) benign(0.211) TCGA-D9-A6EC-06 9 131745611 131745611 T C NUP188 Silent p.A612A 0.31 TCGA-D9-A6EC-06 9 132484531 132484531 C T PRRX2 Missense_Mutation p.P221L 0.44 tolerated(0.2) benign(0.039) TCGA-D9-A6EC-06 9 132484532 132484532 C T PRRX2 Silent p.P221P 0.46 TCGA-D9-A6EC-06 9 133961046 133961046 C T LAMC3 Missense_Mutation p.P1389L 0.51 deleterious(0.04) benign(0.002) TCGA-D9-A6EC-06 9 134073460 134073460 C T NUP214 Missense_Mutation p.P1527S 0.24 benign(0) TCGA-D9-A6EC-06 9 134501766 134501766 A T RAPGEF1 Silent p.S416S 0.16 TCGA-D9-A6EC-06 9 134504019 134504019 G A RAPGEF1 Missense_Mutation p.P313S 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-D9-A6EC-06 9 135203959 135203959 G A SETX Missense_Mutation p.S1009F 0.30 tolerated(0.71) benign(0.043) TCGA-D9-A6EC-06 9 135204948 135204948 T A SETX Silent p.L679L 0.30 TCGA-D9-A6EC-06 9 135357735 135357735 T G C9orf171 Silent p.V78V 0.16 TCGA-D9-A6EC-06 9 135537838 135537838 G A DDX31 Missense_Mutation p.P212L 0.30 deleterious(0) probably_damaging(0.992) TCGA-D9-A6EC-06 9 135781241 135781241 G A TSC1 Missense_Mutation p.S575F 0.55 deleterious(0.01) possibly_damaging(0.739) TCGA-D9-A6EC-06 9 135947060 135947060 C T CEL Missense_Mutation p.P727L 0.32 deleterious_low_confidence(0) benign(0.024) TCGA-D9-A6EC-06 9 136320538 136320538 T C ADAMTS13 Silent p.A1127A 0.23 TCGA-D9-A6EC-06 9 136913319 136913319 G A BRD3 Silent p.S324S 0.62 TCGA-D9-A6EC-06 9 137671947 137671947 G A COL5A1 Splice_Site p.X796_splice 0.62 TCGA-D9-A6EC-06 9 137688695 137688695 G A COL5A1 Missense_Mutation p.G949E 0.28 unknown(0) TCGA-D9-A6EC-06 9 137801825 137801825 G A FCN1 Missense_Mutation p.S267F 0.24 deleterious(0.01) possibly_damaging(0.802) TCGA-D9-A6EC-06 9 138011992 138011992 C T OLFM1 Missense_Mutation p.L458F 0.56 deleterious(0) benign(0.236) TCGA-D9-A6EC-06 9 138378745 138378745 A G PPP1R26 Missense_Mutation p.R797G 0.21 tolerated(0.06) possibly_damaging(0.765) TCGA-D9-A6EC-06 9 139089135 139089135 C T LHX3 3'UTR 0.69 TCGA-D9-A6EC-06 9 139341420 139341420 G A SEC16A Intron 0.59 TCGA-D9-A6EC-06 9 139341421 139341421 G A SEC16A Intron 0.58 TCGA-D9-A6EC-06 9 139396529 139396529 T G NOTCH1 Missense_Mutation p.N1799T 0.28 tolerated(0.1) possibly_damaging(0.694) TCGA-D9-A6EC-06 9 139701264 139701264 A T CCDC183 Missense_Mutation p.E445V 0.34 deleterious(0) probably_damaging(0.978) TCGA-D9-A6EC-06 9 139732073 139732073 T G RABL6 Missense_Mutation p.F363C 0.22 deleterious(0) possibly_damaging(0.878) TCGA-D9-A6EC-06 9 139758301 139758301 C T EDF1 Missense_Mutation p.R34Q 0.21 tolerated(0.8) benign(0.004) TCGA-D9-A6EC-06 9 139846844 139846844 C T LCN12 Missense_Mutation p.P22L 0.50 deleterious(0.04) unknown(0) TCGA-D9-A6EC-06 9 139911056 139911056 G A ABCA2 Nonsense_Mutation p.Q965* 0.59 TCGA-D9-A6EC-06 9 139929414 139929414 G A C9orf139 Missense_Mutation p.E161K 0.64 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-D9-A6EC-06 9 139973505 139973505 G A UAP1L1 Missense_Mutation p.V250M 0.26 deleterious(0) probably_damaging(0.914) TCGA-D9-A6EC-06 9 140058063 140058063 C T GRIN1 Nonsense_Mutation p.Q817* 0.23 TCGA-D9-A6EC-06 9 140441772 140441772 A G PNPLA7 Missense_Mutation p.L61P 0.27 deleterious(0.05) possibly_damaging(0.642) TCGA-D9-A6EC-06 9 140469211 140469211 T G DPH7 Missense_Mutation p.T154P 0.21 tolerated(0.37) benign(0.003) TCGA-D9-A6EC-06 9 140510347 140510347 G A C9orf37 Missense_Mutation p.P102L 0.26 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-D9-A6EC-06 9 140674128 140674128 C T EHMT1 Missense_Mutation p.S745F 0.32 deleterious(0.02) possibly_damaging(0.644) TCGA-D9-A6EC-06 9 140674129 140674129 C T EHMT1 Silent p.S745S 0.28 TCGA-D9-A6EC-06 9 140773602 140773602 C T CACNA1B Silent p.S127S 0.19 TCGA-D9-A6EC-06 9 140846733 140846733 A C CACNA1B Missense_Mutation p.D325A 0.16 deleterious(0) benign(0.06) TCGA-D9-A6EC-06 9 140850222 140850222 C T CACNA1B Silent p.I381I 0.43 TCGA-D9-A6EC-06 9 141016396 141016396 C T CACNA1B Missense_Mutation p.S2322L 0.49 deleterious(0.01) benign(0.009) TCGA-D9-A6EC-06 9 14842402 14842402 C T FREM1 Silent p.V550V 0.26 TCGA-D9-A6EC-06 9 14857567 14857567 C T FREM1 Missense_Mutation p.S271N 0.32 deleterious(0.02) possibly_damaging(0.465) TCGA-D9-A6EC-06 9 16738473 16738473 C T BNC2 Missense_Mutation p.G5E 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-D9-A6EC-06 9 16738474 16738474 C T BNC2 Missense_Mutation p.G5R 0.23 tolerated_low_confidence(0.13) unknown(0) TCGA-D9-A6EC-06 9 17457565 17457565 A G CNTLN Missense_Mutation p.D1053G 0.25 tolerated(0.06) possibly_damaging(0.731) TCGA-D9-A6EC-06 9 19058287 19058287 T C HAUS6 Silent p.S826S 0.28 TCGA-D9-A6EC-06 9 20413969 20413969 T C MLLT3 Missense_Mutation p.E292G 0.32 tolerated(0.09) benign(0.142) TCGA-D9-A6EC-06 9 20882029 20882029 A G FOCAD Missense_Mutation p.Q826R 0.30 deleterious(0.02) benign(0.146) TCGA-D9-A6EC-06 9 21007080 21007080 T G PTPLAD2 Silent p.R219R 0.18 TCGA-D9-A6EC-06 9 21201552 21201552 G A IFNA7 3'UTR 0.63 TCGA-D9-A6EC-06 9 21206505 21206505 C T IFNA10 3'UTR 0.22 TCGA-D9-A6EC-06 9 21217128 21217128 G A IFNA16 Silent p.F59F 0.34 TCGA-D9-A6EC-06 9 21367632 21367632 C T IFNA13 Silent p.Q126Q 0.12 TCGA-D9-A6EC-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.38 TCGA-D9-A6EC-06 9 2641453 2641453 T C VLDLR Silent p.C134C 0.23 TCGA-D9-A6EC-06 9 27062740 27062740 A C IFT74 3'UTR 0.20 TCGA-D9-A6EC-06 9 27180344 27180344 G A TEK Silent p.Q336Q 0.16 TCGA-D9-A6EC-06 9 27180345 27180345 G A TEK Missense_Mutation p.G337R 0.16 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 9 27190656 27190656 T G TEK Missense_Mutation p.V486G 0.62 tolerated(0.3) benign(0.004) TCGA-D9-A6EC-06 9 27203053 27203053 G A TEK Silent p.E715E 0.17 TCGA-D9-A6EC-06 9 32487516 32487516 T C DDX58 Missense_Mutation p.K443R 0.08 tolerated(1) benign(0.001) TCGA-D9-A6EC-06 9 32630334 32630334 C T TAF1L Silent p.E1748E 0.61 TCGA-D9-A6EC-06 9 32632450 32632450 T G TAF1L Missense_Mutation p.E1043A 0.06 deleterious(0) possibly_damaging(0.733) TCGA-D9-A6EC-06 9 33276471 33276471 A G CHMP5 Silent p.L135L 0.21 TCGA-D9-A6EC-06 9 33385042 33385042 G A AQP7 Silent p.A330A 0.33 TCGA-D9-A6EC-06 9 33442816 33442816 C T AQP3 Intron 0.58 TCGA-D9-A6EC-06 9 33470118 33470118 G A NOL6 Silent p.G150G 0.48 TCGA-D9-A6EC-06 9 34371360 34371360 C T KIAA1161 Missense_Mutation p.D494N 0.52 tolerated(0.14) benign(0.443) TCGA-D9-A6EC-06 9 34485217 34485217 C T DNAI1 Silent p.D53D 0.30 TCGA-D9-A6EC-06 9 34485444 34485444 G A DNAI1 Missense_Mutation p.E64K 0.39 deleterious(0.03) possibly_damaging(0.589) TCGA-D9-A6EC-06 9 35074167 35074167 A T FANCG Missense_Mutation p.S603T 0.23 tolerated(0.23) benign(0.005) TCGA-D9-A6EC-06 9 35546640 35546640 G A RUSC2 Missense_Mutation p.R41K 0.56 deleterious(0.05) probably_damaging(0.977) TCGA-D9-A6EC-06 9 35605820 35605820 C T TESK1 Silent p.F68F 0.42 TCGA-D9-A6EC-06 9 35616188 35616188 A G CD72 Missense_Mutation p.I147T 0.28 tolerated(0.43) benign(0.024) TCGA-D9-A6EC-06 9 35805557 35805557 A C NPR2 Missense_Mutation p.K646T 0.26 deleterious(0) possibly_damaging(0.795) TCGA-D9-A6EC-06 9 35806465 35806465 G A NPR2 Missense_Mutation p.E817K 0.52 deleterious(0) probably_damaging(0.973) TCGA-D9-A6EC-06 9 36170609 36170609 G A CCIN Missense_Mutation p.M370I 0.41 deleterious(0.02) benign(0.376) TCGA-D9-A6EC-06 9 37015009 37015009 A C PAX5 Missense_Mutation p.V132G 0.06 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 9 37512591 37512591 C T FBXO10 Missense_Mutation p.E942K 0.53 tolerated(0.16) benign(0.272) TCGA-D9-A6EC-06 9 37708487 37708487 C T FRMPD1 Silent p.V117V 0.33 TCGA-D9-A6EC-06 9 37744935 37744935 C T FRMPD1 Missense_Mutation p.P969L 0.62 tolerated(0.09) benign(0.008) TCGA-D9-A6EC-06 9 37746243 37746243 C T FRMPD1 Missense_Mutation p.S1405F 0.37 deleterious(0.01) possibly_damaging(0.723) TCGA-D9-A6EC-06 9 37762051 37762051 C T TRMT10B Silent p.I41I 0.42 TCGA-D9-A6EC-06 9 39073831 39073831 C T CNTNAP3 3'UTR 0.25 TCGA-D9-A6EC-06 9 39171504 39171504 G A CNTNAP3 Nonsense_Mutation p.R399* 0.14 TCGA-D9-A6EC-06 9 406954 406954 C T DOCK8 Nonsense_Mutation p.Q1139* 0.27 TCGA-D9-A6EC-06 9 40702761 40702761 G A SPATA31A3 Missense_Mutation p.E140K 0.13 deleterious(0.03) possibly_damaging(0.801) TCGA-D9-A6EC-06 9 40702778 40702778 T C SPATA31A3 Silent p.A145A 0.13 TCGA-D9-A6EC-06 9 43626632 43626632 G A SPATA31A6 Silent p.F685F 0.21 TCGA-D9-A6EC-06 9 43626722 43626722 C T SPATA31A6 Silent p.V655V 0.42 TCGA-D9-A6EC-06 9 4585466 4585466 G A SLC1A1 Missense_Mutation p.E495K 0.33 tolerated(0.06) possibly_damaging(0.504) TCGA-D9-A6EC-06 9 5754839 5754839 A C KIAA1432 Splice_Site p.X535_splice 0.25 TCGA-D9-A6EC-06 9 5832913 5832913 G A ERMP1 Silent p.L39L 0.83 TCGA-D9-A6EC-06 9 5969004 5969004 T G KIAA2026 Missense_Mutation p.E409D 0.15 tolerated(0.09) possibly_damaging(0.775) TCGA-D9-A6EC-06 9 6252913 6252913 G A IL33 Missense_Mutation p.D131N 0.55 tolerated(0.21) possibly_damaging(0.53) TCGA-D9-A6EC-06 9 6328517 6328517 C T TPD52L3 5'UTR 0.32 TCGA-D9-A6EC-06 9 6556179 6556179 G A GLDC Silent p.L726L 0.82 TCGA-D9-A6EC-06 9 6565393 6565393 G A GLDC Silent p.I629I 0.28 TCGA-D9-A6EC-06 9 6849702 6849702 C T KDM4C Splice_Site p.X210_splice 0.18 TCGA-D9-A6EC-06 9 69424032 69424032 C T ANKRD20A4 Silent p.F776F 0.32 TCGA-D9-A6EC-06 9 71002483 71002483 C T PGM5 Missense_Mutation p.R226C 0.33 tolerated(0.34) benign(0.203) TCGA-D9-A6EC-06 9 712435 712435 A T KANK1 Missense_Mutation p.N557Y 0.09 deleterious(0.03) benign(0.092) TCGA-D9-A6EC-06 9 71395913 71395913 T G FAM122A Missense_Mutation p.F278C 0.31 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-D9-A6EC-06 9 71992360 71992360 C T FAM189A2 Silent p.Y109Y 0.19 TCGA-D9-A6EC-06 9 72920191 72920191 A C SMC5 Missense_Mutation p.K498T 0.18 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 9 73027964 73027964 T C KLF9 Missense_Mutation p.S106G 0.17 tolerated(0.42) benign(0) TCGA-D9-A6EC-06 9 74360274 74360274 A C TMEM2 Missense_Mutation p.L232V 0.09 tolerated(0.23) benign(0.029) TCGA-D9-A6EC-06 9 74526545 74526545 C A C9orf85 5'UTR 0.47 TCGA-D9-A6EC-06 9 74817635 74817635 G A GDA Missense_Mutation p.E121K 0.56 tolerated(0.39) benign(0.012) TCGA-D9-A6EC-06 9 75357386 75357386 T A TMC1 Missense_Mutation p.F160L 0.25 tolerated(0.28) benign(0.143) TCGA-D9-A6EC-06 9 75773675 75773675 C T ANXA1 Missense_Mutation p.P44L 0.80 deleterious(0) benign(0.267) TCGA-D9-A6EC-06 9 77249570 77249570 G A RORB Silent p.Q39Q 0.41 TCGA-D9-A6EC-06 9 77282747 77282747 G A RORB Silent p.K347K 0.28 TCGA-D9-A6EC-06 9 77339628 77339628 T C TRPM6 Missense_Mutation p.I1990M 0.22 deleterious(0.02) benign(0.044) TCGA-D9-A6EC-06 9 77397598 77397598 C T TRPM6 Missense_Mutation p.D1031N 0.47 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EC-06 9 78710956 78710956 G A PCSK5 Missense_Mutation p.E349K 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 9 78937987 78937987 C T PCSK5 Silent p.F1347F 0.21 TCGA-D9-A6EC-06 9 79322007 79322007 A G PRUNE2 Missense_Mutation p.V1728A 0.19 tolerated(1) benign(0) TCGA-D9-A6EC-06 9 79917931 79917931 C T VPS13A Nonsense_Mutation p.Q1305* 0.31 TCGA-D9-A6EC-06 9 80336252 80336252 T C GNAQ Missense_Mutation p.Y356C 0.25 tolerated(0.41) benign(0.107) TCGA-D9-A6EC-06 9 8317716 8317716 G A PTPRD 3'UTR 0.42 TCGA-D9-A6EC-06 9 8341100 8341100 C T PTPRD Missense_Mutation p.D1706N 0.37 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 9 84226688 84226688 G A TLE1 Missense_Mutation p.P417L 0.68 deleterious(0) benign(0.029) TCGA-D9-A6EC-06 9 84549476 84549476 G A RP11-383M4.6 Intron 0.28 TCGA-D9-A6EC-06 9 84562508 84562508 C A RP11-383M4.6 Intron 0.19 TCGA-D9-A6EC-06 9 84606147 84606147 G A SPATA31D1 Silent p.E254E 0.31 TCGA-D9-A6EC-06 9 8471012 8471012 C T PTPRD Missense_Mutation p.E1163K 0.29 deleterious(0) possibly_damaging(0.459) TCGA-D9-A6EC-06 9 8486156 8486156 C A PTPRD Missense_Mutation p.K887N 0.51 deleterious(0.01) possibly_damaging(0.583) TCGA-D9-A6EC-06 9 8523525 8523525 C T PTPRD Splice_Site p.X227_splice 0.24 TCGA-D9-A6EC-06 9 86503462 86503462 G A KIF27 Silent p.S675S 0.30 TCGA-D9-A6EC-06 9 92007443 92007443 G C SEMA4D Missense_Mutation p.L173V 0.27 deleterious(0) probably_damaging(0.951) TCGA-D9-A6EC-06 9 94486425 94486425 G A ROR2 Missense_Mutation p.A784V 0.39 tolerated(0.13) benign(0.027) TCGA-D9-A6EC-06 9 95482669 95482669 G A BICD2 Silent p.L325L 0.20 TCGA-D9-A6EC-06 9 95609959 95609959 G A ZNF484 Silent p.N372N 0.24 TCGA-D9-A6EC-06 9 95610131 95610131 G A ZNF484 Missense_Mutation p.S315F 0.29 tolerated(0.13) benign(0.001) TCGA-D9-A6EC-06 9 95782666 95782666 T G FGD3 Missense_Mutation p.F485C 0.36 tolerated(0.27) benign(0.004) TCGA-D9-A6EC-06 9 96021605 96021605 T C WNK2 Silent p.P925P 0.38 TCGA-D9-A6EC-06 9 96079800 96079800 A G WNK2 Splice_Site p.X2210_splice 0.26 TCGA-D9-A6EC-06 9 96079871 96079871 G A WNK2 Missense_Mutation p.V2233I 0.37 unknown(0) TCGA-D9-A6EC-06 9 96429377 96429377 G A PHF2 Missense_Mutation p.D735N 0.25 deleterious(0.04) unknown(0) TCGA-D9-A6EC-06 9 96860379 96860379 A G PTPDC1 Missense_Mutation p.S509G 0.19 deleterious(0.03) benign(0.149) TCGA-D9-A6EC-06 9 97221549 97221549 A C HIATL1 Missense_Mutation p.Q459P 0.08 tolerated(0.2) benign(0) TCGA-D9-A6EC-06 9 99581936 99581936 A C ZNF782 Missense_Mutation p.N123K 0.11 tolerated(0.12) benign(0.081) TCGA-D9-A6EC-06 9 99800258 99800258 T C CTSV Missense_Mutation p.Q23R 0.09 tolerated(0.56) benign(0.006) TCGA-D9-A6EC-06 X 101818595 101818595 A T NXF4 RNA 1.00 TCGA-D9-A6EC-06 X 101911790 101911790 T C GPRASP1 Silent p.T983T 0.28 TCGA-D9-A6EC-06 X 101970443 101970443 G A GPRASP2 Missense_Mutation p.E216K 0.44 tolerated(0.2) benign(0.231) TCGA-D9-A6EC-06 X 102004336 102004336 A C BHLHB9 Missense_Mutation p.D138A 0.55 deleterious(0.03) benign(0.055) TCGA-D9-A6EC-06 X 104464728 104464728 C T TEX13A Silent p.Q118Q 0.88 TCGA-D9-A6EC-06 X 105169003 105169003 G A NRK Missense_Mutation p.D1099N 0.92 tolerated(0.07) benign(0.265) TCGA-D9-A6EC-06 X 105277518 105277518 C T SERPINA7 Silent p.G407G 0.92 TCGA-D9-A6EC-06 X 105876214 105876214 T C CXorf57 Silent p.L381L 0.56 TCGA-D9-A6EC-06 X 106117150 106117150 G A TBC1D8B Silent p.L1106L 0.32 TCGA-D9-A6EC-06 X 107419009 107419009 C T COL4A6 Missense_Mutation p.G903E 1.00 probably_damaging(0.999) TCGA-D9-A6EC-06 X 107911653 107911653 C T COL4A5 Missense_Mutation p.P1237S 1.00 unknown(0) TCGA-D9-A6EC-06 X 108691315 108691315 G A GUCY2F Missense_Mutation p.P518S 1.00 deleterious(0.03) probably_damaging(0.996) TCGA-D9-A6EC-06 X 110489795 110489795 G A CAPN6 3'UTR 0.95 TCGA-D9-A6EC-06 X 11197549 11197549 C T ARHGAP6 Silent p.G451G 0.98 TCGA-D9-A6EC-06 X 114357668 114357668 C T LRCH2 Missense_Mutation p.R646Q 0.80 tolerated(0.33) possibly_damaging(0.845) TCGA-D9-A6EC-06 X 117032815 117032815 G A KLHL13 3'UTR 0.47 TCGA-D9-A6EC-06 X 117788919 117788919 G A DOCK11 Missense_Mutation p.R1655Q 0.96 deleterious(0.05) benign(0.282) TCGA-D9-A6EC-06 X 118784020 118784020 C T SEPT6 Silent p.S190S 0.96 TCGA-D9-A6EC-06 X 119760553 119760553 A C C1GALT1C1 Missense_Mutation p.F157V 0.09 tolerated(0.12) possibly_damaging(0.852) TCGA-D9-A6EC-06 X 122319727 122319727 C T GRIA3 Silent p.F51F 0.61 TCGA-D9-A6EC-06 X 123525926 123525926 A T TENM1 Silent p.I1888I 0.30 TCGA-D9-A6EC-06 X 123587257 123587257 G A TENM1 Missense_Mutation p.T1345I 0.98 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EC-06 X 123787509 123787509 C T TENM1 Silent p.K431K 0.93 TCGA-D9-A6EC-06 X 123839062 123839062 G A TENM1 Silent p.I272I 0.48 TCGA-D9-A6EC-06 X 127185520 127185520 G A ACTRT1 Silent p.I222I 0.96 TCGA-D9-A6EC-06 X 127186076 127186076 G A ACTRT1 Missense_Mutation p.S37F 0.98 deleterious(0) probably_damaging(0.951) TCGA-D9-A6EC-06 X 12734464 12734464 C T FRMPD4 Missense_Mutation p.S629F 0.89 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-D9-A6EC-06 X 128879217 128879217 G A XPNPEP2 Nonsense_Mutation p.W91* 0.97 TCGA-D9-A6EC-06 X 12906044 12906044 C T TLR7 Missense_Mutation p.P806L 1.00 deleterious(0) probably_damaging(0.989) TCGA-D9-A6EC-06 X 129629966 129629966 A C RP1-274L7.1 Intron 0.33 TCGA-D9-A6EC-06 X 130218268 130218268 C T ARHGAP36 Missense_Mutation p.S212F 1.00 deleterious(0) possibly_damaging(0.797) TCGA-D9-A6EC-06 X 130409492 130409492 G A IGSF1 Silent p.I1053I 0.45 TCGA-D9-A6EC-06 X 131212554 131212554 A C FRMD7 Missense_Mutation p.F497L 0.58 tolerated(0.07) probably_damaging(0.989) TCGA-D9-A6EC-06 X 132352079 132352079 A C TFDP3 Missense_Mutation p.I70S 0.34 tolerated(0.84) benign(0.032) TCGA-D9-A6EC-06 X 134994973 134994973 T A SAGE1 Missense_Mutation p.L878I 0.50 deleterious(0.01) probably_damaging(0.969) TCGA-D9-A6EC-06 X 135426616 135426616 A G GPR112 Missense_Mutation p.T251A 0.33 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EC-06 X 135482133 135482133 A G GPR112 Silent p.T2811T 0.10 TCGA-D9-A6EC-06 X 135494461 135494461 G A GPR112 Silent p.E2991E 1.00 TCGA-D9-A6EC-06 X 14038280 14038280 A C GEMIN8 Missense_Mutation p.V130G 0.31 deleterious(0) possibly_damaging(0.831) TCGA-D9-A6EC-06 X 14038614 14038614 G A GEMIN8 Missense_Mutation p.P19S 0.95 deleterious(0.03) probably_damaging(0.993) TCGA-D9-A6EC-06 X 140994042 140994042 C T MAGEC1 Silent p.F284F 0.12 TCGA-D9-A6EC-06 X 140994147 140994147 C T MAGEC1 Silent p.F319F 0.12 TCGA-D9-A6EC-06 X 148037719 148037719 C T AFF2 Missense_Mutation p.S715L 0.94 deleterious(0) probably_damaging(0.994) TCGA-D9-A6EC-06 X 149013454 149013454 A G MAGEA8 Silent p.A136A 0.13 TCGA-D9-A6EC-06 X 150345358 150345358 G A GPR50 Silent p.K55K 0.95 TCGA-D9-A6EC-06 X 150885773 150885773 G A FATE1 Missense_Mutation p.G46S 0.95 tolerated(0.14) possibly_damaging(0.532) TCGA-D9-A6EC-06 X 150912138 150912138 A C CNGA2 Missense_Mutation p.K388T 0.10 deleterious(0) possibly_damaging(0.448) TCGA-D9-A6EC-06 X 151821244 151821244 C T GABRQ Missense_Mutation p.R467C 0.96 tolerated_low_confidence(0.2) benign(0.007) TCGA-D9-A6EC-06 X 151821258 151821258 C T GABRQ Silent p.F471F 0.93 TCGA-D9-A6EC-06 X 151909211 151909211 G A CSAG1 3'UTR 0.88 TCGA-D9-A6EC-06 X 152482129 152482129 G A MAGEA1 Silent p.F294F 0.98 TCGA-D9-A6EC-06 X 153061897 153061897 T C SSR4 Missense_Mutation p.C26R 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 X 153130159 153130159 C T L1CAM Missense_Mutation p.G1016E 0.94 tolerated(0.45) benign(0.021) TCGA-D9-A6EC-06 X 153130160 153130160 C T L1CAM Splice_Site p.X1016_splice 0.93 TCGA-D9-A6EC-06 X 153225279 153225279 G A HCFC1 Missense_Mutation p.S473F 0.97 deleterious(0.01) benign(0.309) TCGA-D9-A6EC-06 X 153420075 153420075 C T OPN1LW Missense_Mutation p.S202L 0.29 deleterious(0) possibly_damaging(0.794) TCGA-D9-A6EC-06 X 154001512 154001512 T G DKC1 Silent p.G381G 0.09 TCGA-D9-A6EC-06 X 154132799 154132799 C T F8 Missense_Mutation p.E1863K 0.41 deleterious(0.04) possibly_damaging(0.773) TCGA-D9-A6EC-06 X 155235758 155235758 C T IL9R Silent p.I264I 0.39 TCGA-D9-A6EC-06 X 155254976 155254976 C T WASH6P RNA 0.26 TCGA-D9-A6EC-06 X 155255058 155255058 C T WASH6P RNA 0.30 TCGA-D9-A6EC-06 X 15677154 15677154 T C TMEM27 Missense_Mutation p.N63S 0.91 tolerated(0.35) benign(0.009) TCGA-D9-A6EC-06 X 16850829 16850829 A T TXLNG Missense_Mutation p.K316N 0.36 deleterious(0.02) benign(0.088) TCGA-D9-A6EC-06 X 17065576 17065576 T G REPS2 Missense_Mutation p.L293R 0.42 deleterious(0) probably_damaging(0.96) TCGA-D9-A6EC-06 X 1755366 1755366 C T ASMT Silent p.L275L 0.49 TCGA-D9-A6EC-06 X 1761768 1761768 C T ASMT Missense_Mutation p.S328F 0.52 deleterious(0) probably_damaging(0.998) TCGA-D9-A6EC-06 X 17744381 17744381 A C NHS Missense_Mutation p.S698R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D9-A6EC-06 X 18323328 18323328 G A SCML2 Missense_Mutation p.P165L 0.46 tolerated(0.06) possibly_damaging(0.747) TCGA-D9-A6EC-06 X 18660041 18660041 C T RS1 3'UTR 1.00 TCGA-D9-A6EC-06 X 18845470 18845470 C T PPEF1 Silent p.S609S 1.00 TCGA-D9-A6EC-06 X 19027875 19027875 C T GPR64 Missense_Mutation p.G431S 1.00 deleterious(0.02) probably_damaging(0.967) TCGA-D9-A6EC-06 X 19610234 19610234 C T SH3KBP1 Silent p.K363K 0.98 TCGA-D9-A6EC-06 X 19968923 19968923 G A CXorf23 Missense_Mutation p.R565W 0.40 deleterious(0.01) possibly_damaging(0.709) TCGA-D9-A6EC-06 X 21609150 21609150 A G CNKSR2 Silent p.A556A 0.14 TCGA-D9-A6EC-06 X 21875419 21875419 A C YY2 Missense_Mutation p.K273Q 0.52 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EC-06 X 22239738 22239738 T C PHEX Missense_Mutation p.Y593H 1.00 deleterious(0.03) possibly_damaging(0.819) TCGA-D9-A6EC-06 X 23398122 23398122 T G PTCHD1 Missense_Mutation p.S256A 0.33 tolerated(0.07) benign(0.386) TCGA-D9-A6EC-06 X 23398124 23398124 A G PTCHD1 Silent p.S256S 0.10 TCGA-D9-A6EC-06 X 23398262 23398262 C T PTCHD1 Silent p.L302L 0.97 TCGA-D9-A6EC-06 X 24597496 24597496 A C PCYT1B Silent p.V215V 0.34 TCGA-D9-A6EC-06 X 24625908 24625908 A G PCYT1B Silent p.L96L 0.96 TCGA-D9-A6EC-06 X 26212322 26212322 C T MAGEB6 Missense_Mutation p.S120L 0.95 deleterious(0.01) possibly_damaging(0.587) TCGA-D9-A6EC-06 X 27840449 27840449 G A MAGEB10 Silent p.K342K 0.96 TCGA-D9-A6EC-06 X 29972765 29972765 G A IL1RAPL1 Missense_Mutation p.G443E 0.87 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 X 30269510 30269510 C T MAGEB1 Silent p.F300F 0.96 TCGA-D9-A6EC-06 X 3228364 3228364 C T MXRA5 Missense_Mutation p.R2627K 0.94 deleterious(0.05) possibly_damaging(0.809) TCGA-D9-A6EC-06 X 3241475 3241475 C T MXRA5 Missense_Mutation p.E751K 0.98 tolerated(0.1) benign(0.162) TCGA-D9-A6EC-06 X 34149841 34149841 C T FAM47A Silent p.G185G 0.98 TCGA-D9-A6EC-06 X 34962683 34962683 G A FAM47B Missense_Mutation p.E579K 0.97 deleterious(0.03) probably_damaging(0.994) TCGA-D9-A6EC-06 X 37027070 37027070 C T FAM47C Missense_Mutation p.S196F 0.93 tolerated(0.09) possibly_damaging(0.52) TCGA-D9-A6EC-06 X 37965985 37965985 A C SYTL5 Missense_Mutation p.N454T 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-D9-A6EC-06 X 38150238 38150238 T G RPGR Missense_Mutation p.K516Q 0.44 benign(0.254) TCGA-D9-A6EC-06 X 39933537 39933537 G A BCOR Silent p.Y354Y 1.00 TCGA-D9-A6EC-06 X 41048638 41048638 T C USP9X Missense_Mutation p.F1296S 0.38 deleterious(0) probably_damaging(0.958) TCGA-D9-A6EC-06 X 41437746 41437746 T G CASK Missense_Mutation p.E450D 0.50 tolerated(0.13) benign(0.162) TCGA-D9-A6EC-06 X 46508218 46508218 C T SLC9A7 Silent p.L454L 1.00 TCGA-D9-A6EC-06 X 46539136 46539136 G A SLC9A7 Missense_Mutation p.H194Y 0.93 tolerated(0.35) benign(0.02) TCGA-D9-A6EC-06 X 46845161 46845161 A C JADE3 Missense_Mutation p.K32Q 0.21 tolerated(0.3) possibly_damaging(0.609) TCGA-D9-A6EC-06 X 47085787 47085787 A C CDK16 Missense_Mutation p.K375T 0.14 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 X 47273062 47273062 G A ZNF157 3'UTR 0.89 TCGA-D9-A6EC-06 X 47747398 47747398 G A ZNF81 Missense_Mutation p.V19I 0.89 tolerated(0.47) benign(0.002) TCGA-D9-A6EC-06 X 48125825 48125825 C T SSX1 Intron 0.96 TCGA-D9-A6EC-06 X 48325381 48325381 A G SLC38A5 Silent p.Y71Y 0.24 TCGA-D9-A6EC-06 X 48433611 48433611 T C RBM3 Missense_Mutation p.F15L 0.41 tolerated(0.41) benign(0.208) TCGA-D9-A6EC-06 X 49071632 49071632 G A CACNA1F Missense_Mutation p.R1182C 0.96 deleterious(0) benign(0.136) TCGA-D9-A6EC-06 X 49074213 49074213 C T CACNA1F Splice_Site p.X1041_splice 0.44 TCGA-D9-A6EC-06 X 49079202 49079202 G A CACNA1F Silent p.F738F 0.89 TCGA-D9-A6EC-06 X 49957224 49957224 A G AKAP4 Missense_Mutation p.Y714H 0.39 tolerated(0.19) probably_damaging(0.977) TCGA-D9-A6EC-06 X 49957435 49957435 G A AKAP4 Silent p.F643F 0.94 TCGA-D9-A6EC-06 X 50031825 50031825 G A CCNB3 Missense_Mutation p.E48K 0.94 tolerated_low_confidence(1) benign(0) TCGA-D9-A6EC-06 X 50119762 50119762 G A DGKK RNA 0.82 TCGA-D9-A6EC-06 X 50127735 50127735 T A DGKK RNA 0.41 TCGA-D9-A6EC-06 X 50131544 50131544 C T DGKK RNA 0.95 TCGA-D9-A6EC-06 X 52825551 52825551 G A SPANXN5 Nonsense_Mutation p.Q66* 0.95 TCGA-D9-A6EC-06 X 53600725 53600725 A G HUWE1 Silent p.S2099S 0.29 TCGA-D9-A6EC-06 X 54161968 54161968 T G FAM120C Missense_Mutation p.K443T 0.20 tolerated(0.11) possibly_damaging(0.744) TCGA-D9-A6EC-06 X 54184190 54184190 G A FAM120C Missense_Mutation p.P321S 1.00 tolerated(0.15) possibly_damaging(0.801) TCGA-D9-A6EC-06 X 54324655 54324655 T C WNK3 Missense_Mutation p.S451G 1.00 deleterious(0) probably_damaging(0.921) TCGA-D9-A6EC-06 X 63409814 63409814 G A AMER1 Missense_Mutation p.A1118V 0.86 tolerated(0.22) benign(0.017) TCGA-D9-A6EC-06 X 63444798 63444798 C T ASB12 Missense_Mutation p.D245N 1.00 deleterious(0.01) probably_damaging(0.968) TCGA-D9-A6EC-06 X 69640118 69640118 T C KIF4A 3'UTR 0.93 TCGA-D9-A6EC-06 X 70145977 70145977 G A SLC7A3 Missense_Mutation p.L558F 1.00 deleterious(0.02) probably_damaging(0.923) TCGA-D9-A6EC-06 X 70147842 70147842 G A SLC7A3 Silent p.S283S 1.00 TCGA-D9-A6EC-06 X 70340915 70340915 T G MED12 Silent p.G216G 0.29 TCGA-D9-A6EC-06 X 73044480 73044480 C T XIST RNA 0.33 TCGA-D9-A6EC-06 X 73063414 73063414 A T XIST RNA 0.48 TCGA-D9-A6EC-06 X 73063816 73063816 C T XIST RNA 0.93 TCGA-D9-A6EC-06 X 73071204 73071204 T A XIST RNA 0.97 TCGA-D9-A6EC-06 X 73962509 73962509 C T KIAA2022 Missense_Mutation p.R628Q 0.44 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 X 73965443 73965443 C T KIAA2022 Missense_Mutation p.G15R 0.96 deleterious_low_confidence(0.01) benign(0.022) TCGA-D9-A6EC-06 X 75003296 75003296 G A MAGEE2 3'UTR 0.83 TCGA-D9-A6EC-06 X 77913326 77913326 G A ZCCHC5 Nonsense_Mutation p.Q198* 0.48 TCGA-D9-A6EC-06 X 77913327 77913327 G A ZCCHC5 Silent p.A197A 0.48 TCGA-D9-A6EC-06 X 79282801 79282801 G A TBX22 Missense_Mutation p.R282K 0.56 deleterious(0) probably_damaging(0.961) TCGA-D9-A6EC-06 X 88008986 88008986 G A CPXCR1 Missense_Mutation p.E191K 1.00 deleterious(0.03) benign(0.027) TCGA-D9-A6EC-06 X 91133482 91133482 G A PCDH11X Missense_Mutation p.R748K 0.70 tolerated(0.14) benign(0.042) TCGA-D9-A6EC-06 X 99922364 99922364 C G SRPX2 Missense_Mutation p.P352R 0.79 tolerated(0.27) possibly_damaging(0.628) TCGA-D9-A6EC-06 X 99941718 99941718 G A SYTL4 Silent p.I415I 1.00 TCGA-D9-A6EC-06 Y 14923709 14923709 T A USP9Y Missense_Mutation p.L1460H 0.55 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EC-06 Y 14928201 14928201 G A USP9Y Silent p.R1584R 1.00 TCGA-D9-A6EC-06 Y 16835115 16835115 C T NLGN4Y Silent p.I197I 0.98 TCGA-D9-A6EC-06 Y 21868682 21868682 G A KDM5D Missense_Mutation p.S1356F 0.96 deleterious(0.01) benign(0.009) TCGA-D9-A6EC-06 Y 2712177 2712177 C T RPS4Y1 Silent p.F47F 0.97 TCGA-D9-A6EC-06 Y 4966928 4966928 C T PCDH11Y Missense_Mutation p.P437S 0.98 deleterious(0) probably_damaging(1) TCGA-D9-A6EC-06 Y 5605903 5605903 C T PCDH11Y Missense_Mutation p.P1315S 0.94 tolerated_low_confidence(0.19) probably_damaging(0.999) TCGA-D9-A6EC-06 Y 6115623 6115623 T C TSPY2 Silent p.R195R 0.25 TCGA-D9-A6EC-06 Y 9237694 9237694 C T TSPY3 Silent p.F261F 0.91 TCGA-D9-A6EG-06 10 70958251 70958251 C T SUPV3L1 Missense_Mutation p.R383W 0.82 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EG-06 11 14496142 14496142 G A COPB1 Missense_Mutation p.L546F 0.57 deleterious(0.03) benign(0.167) TCGA-D9-A6EG-06 11 2155387 2155387 G A IGF2 Intron 0.48 TCGA-D9-A6EG-06 11 22272494 22272494 C T ANO5 Intron 0.15 TCGA-D9-A6EG-06 11 49831520 49831520 G A RP11-707M1.1 RNA 0.53 TCGA-D9-A6EG-06 11 5020889 5020889 C G OR51L1 Missense_Mutation p.T226S 0.26 tolerated(0.34) benign(0.054) TCGA-D9-A6EG-06 11 62289487 62289487 A C AHNAK Silent p.V4134V 0.80 TCGA-D9-A6EG-06 11 88911237 88911237 G A TYR Nonsense_Mutation p.W39* 0.81 TCGA-D9-A6EG-06 11 9455185 9455185 T C IPO7 Splice_Site p.X650_splice 0.31 TCGA-D9-A6EG-06 12 109294433 109294433 T G DAO 3'UTR 0.53 TCGA-D9-A6EG-06 12 11183987 11183987 G C TAS2R31 5'UTR 0.44 TCGA-D9-A6EG-06 12 124796409 124796409 C T FAM101A Missense_Mutation p.R4W 0.38 deleterious(0) probably_damaging(0.987) TCGA-D9-A6EG-06 12 44148748 44148748 G A PUS7L Missense_Mutation p.H101Y 0.48 tolerated(1) benign(0.001) TCGA-D9-A6EG-06 12 49434805 49434805 G A KMT2D Missense_Mutation p.P2250S 0.54 probably_damaging(0.937) TCGA-D9-A6EG-06 12 71158538 71158539 - T PTPRR Frame_Shift_Ins p.N126Kfs*39 0.27 TCGA-D9-A6EG-06 12 76741015 76741016 - GGGC BBS10 Frame_Shift_Ins p.A251Pfs*5 0.31 TCGA-D9-A6EG-06 13 113470453 113470453 C T ATP11A Silent p.F166F 0.48 TCGA-D9-A6EG-06 14 20612417 20612417 G A OR4N5 Missense_Mutation p.D175N 0.43 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EG-06 14 21896140 21896140 C A CHD8 Nonsense_Mutation p.E497* 0.46 TCGA-D9-A6EG-06 14 21964743 21964743 C T TOX4 Silent p.N615N 0.51 TCGA-D9-A6EG-06 14 51190268 51190268 G A NIN 3'Flank 0.45 TCGA-D9-A6EG-06 14 64692043 64692043 C T SYNE2 Silent p.P6841P 0.41 TCGA-D9-A6EG-06 14 73220058 73220058 T C DPF3 Missense_Mutation p.Y72C 0.30 deleterious(0) probably_damaging(0.966) TCGA-D9-A6EG-06 14 94203661 94203661 G A PRIMA1 Silent p.I95I 0.47 TCGA-D9-A6EG-06 15 33962727 33962727 C T RYR3 Nonsense_Mutation p.Q1944* 0.36 TCGA-D9-A6EG-06 15 65490130 65490130 C T CILP Missense_Mutation p.E832K 0.46 deleterious(0) probably_damaging(0.991) TCGA-D9-A6EG-06 15 66729179 66729179 C T MAP2K1 Silent p.F129F 0.42 TCGA-D9-A6EG-06 16 67325225 67325225 G A KCTD19 Missense_Mutation p.A851V 0.41 tolerated(1) benign(0.001) TCGA-D9-A6EG-06 16 89973658 89973658 C T TCF25 Missense_Mutation p.T576I 0.38 deleterious(0.04) benign(0.219) TCGA-D9-A6EG-06 17 10408793 10408793 C T MYH1 Missense_Mutation p.G737E 0.41 deleterious(0) probably_damaging(1) TCGA-D9-A6EG-06 17 2579865 2579865 T G PAFAH1B1 Missense_Mutation p.W323G 0.35 deleterious(0) probably_damaging(1) TCGA-D9-A6EG-06 17 37187992 37187992 T C CTD-2206N4.2 5'Flank 0.49 TCGA-D9-A6EG-06 17 37898852 37898852 C T GRB7 Silent p.S86S 0.39 TCGA-D9-A6EG-06 17 40839855 40839855 C T CNTNAP1 Missense_Mutation p.R388C 0.51 deleterious(0) possibly_damaging(0.871) TCGA-D9-A6EG-06 17 41290873 41290873 C T NBR2 RNA 0.40 TCGA-D9-A6EG-06 17 4937340 4937340 G A SLC52A1 Silent p.F148F 0.43 TCGA-D9-A6EG-06 18 50432608 50432608 C T DCC Nonsense_Mutation p.Q203* 0.34 TCGA-D9-A6EG-06 19 10169611 10169611 C T C3P1 RNA 0.42 TCGA-D9-A6EG-06 19 10439677 10439677 G C RAVER1 Missense_Mutation p.L150V 0.50 deleterious(0.05) probably_damaging(0.996) TCGA-D9-A6EG-06 19 11541755 11541755 A G CCDC151 Silent p.T110T 0.44 TCGA-D9-A6EG-06 19 17838020 17838020 C T MAP1S Silent p.P609P 0.46 TCGA-D9-A6EG-06 19 41770510 41770510 G A HNRNPUL1 Silent p.Q34Q 0.69 TCGA-D9-A6EG-06 19 56896368 56896368 G A ZNF582 Missense_Mutation p.H140Y 0.31 tolerated(0.13) benign(0.018) TCGA-D9-A6EG-06 19 57670572 57670572 C T DUXA Silent p.Q85Q 0.65 TCGA-D9-A6EG-06 19 6825394 6825394 G A VAV1 Silent p.Q268Q 0.42 TCGA-D9-A6EG-06 1 12638920 12638920 G A DHRS3 Missense_Mutation p.S175F 0.40 deleterious(0) probably_damaging(1) TCGA-D9-A6EG-06 1 144879233 144879233 C T PDE4DIP Missense_Mutation p.G1406E 0.20 tolerated(0.14) probably_damaging(0.962) TCGA-D9-A6EG-06 1 145039624 145039624 C A PDE4DIP 5'UTR 0.18 TCGA-D9-A6EG-06 1 152128264 152128264 G A RPTN Silent p.S437S 0.21 TCGA-D9-A6EG-06 1 1563483 1563483 C G MIB2 Missense_Mutation p.P704A 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-D9-A6EG-06 1 156955923 156955923 G A ARHGEF11 Silent p.R25R 0.22 TCGA-D9-A6EG-06 1 160784289 160784289 A C LY9 Silent p.A270A 0.66 TCGA-D9-A6EG-06 1 200587826 200587826 C T KIF14 Missense_Mutation p.R9K 0.60 deleterious(0.03) benign(0.01) TCGA-D9-A6EG-06 1 209955400 209955400 G A TRAF3IP3 Splice_Site p.X522_splice 0.30 TCGA-D9-A6EG-06 1 214209324 214209324 C G PROX1 3'UTR 0.30 TCGA-D9-A6EG-06 1 247492754 247492754 G A ZNF496 Missense_Mutation p.R43C 0.16 deleterious(0.02) probably_damaging(1) TCGA-D9-A6EG-06 1 31658142 31658142 C T NKAIN1 Nonsense_Mutation p.W75* 0.31 TCGA-D9-A6EG-06 20 23066151 23066151 C G CD93 Missense_Mutation p.E227Q 0.37 tolerated(0.42) benign(0.06) TCGA-D9-A6EG-06 20 3183990 3183990 G A DDRGK1 Missense_Mutation p.P55L 0.50 tolerated(0.19) benign(0.037) TCGA-D9-A6EG-06 20 3183991 3183991 G A DDRGK1 Missense_Mutation p.P55S 0.50 tolerated(0.55) benign(0.002) TCGA-D9-A6EG-06 20 35743678 35743678 C T MROH8 Silent p.K838K 0.47 TCGA-D9-A6EG-06 20 45194892 45194892 G A SLC13A3 Silent p.I490I 0.40 TCGA-D9-A6EG-06 20 52193785 52193785 A C ZNF217 Nonsense_Mutation p.Y506* 0.41 TCGA-D9-A6EG-06 20 5925516 5925516 C A TRMT6 Missense_Mutation p.G101W 0.46 deleterious(0) probably_damaging(0.999) TCGA-D9-A6EG-06 20 61936863 61936863 C T COL20A1 Silent p.F96F 0.39 TCGA-D9-A6EG-06 2 160628313 160628313 T A CD302 3'UTR 0.35 TCGA-D9-A6EG-06 2 179635268 179635268 C T TTN Missense_Mutation p.E2751K 0.46 TCGA-D9-A6EG-06 2 21255235 21255235 G A APOB Missense_Mutation p.A448V 0.53 benign(0.002) TCGA-D9-A6EG-06 2 28843765 28843765 C T PLB1 Silent p.N1149N 0.32 TCGA-D9-A6EG-06 2 44175319 44175319 T C LRPPRC Missense_Mutation p.N621S 0.44 tolerated(0.25) benign(0.014) TCGA-D9-A6EG-06 3 100352141 100352141 C G GPR128 Missense_Mutation p.L123V 0.51 tolerated(0.35) benign(0.004) TCGA-D9-A6EG-06 3 189584482 189584482 C T TP63 Missense_Mutation p.P260S 0.38 deleterious(0.01) possibly_damaging(0.631) TCGA-D9-A6EG-06 3 38760264 38760264 C T SCN10A Silent p.E1187E 0.42 TCGA-D9-A6EG-06 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.30 deleterious(0) probably_damaging(0.939) TCGA-D9-A6EG-06 3 49146575 49146575 A T USP19 Missense_Mutation p.V1359E 0.25 tolerated_low_confidence(0.32) benign(0.008) TCGA-D9-A6EG-06 3 49146576 49146576 C T USP19 Missense_Mutation p.V1359M 0.25 tolerated_low_confidence(0.22) benign(0.264) TCGA-D9-A6EG-06 3 49146577 49146577 C T USP19 Silent p.P1358P 0.25 TCGA-D9-A6EG-06 3 51708476 51708476 C T TEX264 Silent p.F52F 0.45 TCGA-D9-A6EG-06 4 42658862 42658862 T A ATP8A1 Missense_Mutation p.E10V 0.31 tolerated_low_confidence(0.42) benign(0.01) TCGA-D9-A6EG-06 4 46067600 46067600 T C GABRG1 Missense_Mutation p.E108G 0.46 deleterious(0) probably_damaging(0.996) TCGA-D9-A6EG-06 4 46067601 46067601 C T GABRG1 Missense_Mutation p.E108K 0.50 deleterious(0) probably_damaging(0.995) TCGA-D9-A6EG-06 5 139267060 139267060 G A NRG2 Missense_Mutation p.T246M 0.31 deleterious(0.02) probably_damaging(0.922) TCGA-D9-A6EG-06 5 178310831 178310831 C T ZNF354B Missense_Mutation p.H460Y 0.39 deleterious(0) probably_damaging(1) TCGA-D9-A6EG-06 5 35010167 35010167 C T AGXT2 Missense_Mutation p.E426K 0.47 tolerated(0.07) benign(0.035) TCGA-D9-A6EG-06 6 135517065 135517065 C T MYB Silent p.I376I 0.85 TCGA-D9-A6EG-06 6 32781529 32781529 C T HLA-DOB Missense_Mutation p.G242E 0.80 deleterious(0) probably_damaging(1) TCGA-D9-A6EG-06 6 47846782 47846782 C - PTCHD4 Frame_Shift_Del p.E600Kfs*30 0.17 TCGA-D9-A6EG-06 6 6626580 6626580 C T LY86 Missense_Mutation p.S93F 0.31 tolerated(0.07) benign(0.014) TCGA-D9-A6EG-06 6 84269865 84269865 C T SNAP91 Missense_Mutation p.M863I 0.78 tolerated(0.1) possibly_damaging(0.577) TCGA-D9-A6EG-06 7 100179449 100179449 G A LRCH4 Silent p.S183S 0.58 TCGA-D9-A6EG-06 7 127326753 127326753 T G SND1 Silent p.R55R 0.28 TCGA-D9-A6EG-06 7 138546011 138546011 G A KIAA1549 Silent p.T1707T 0.36 TCGA-D9-A6EG-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.59 deleterious(0) probably_damaging(0.967) TCGA-D9-A6EG-06 7 21775366 21775366 A G DNAH11 Missense_Mutation p.T2524A 0.28 probably_damaging(0.94) TCGA-D9-A6EG-06 7 26251734 26251734 C T CBX3 Missense_Mutation p.A153V 0.19 deleterious(0) possibly_damaging(0.65) TCGA-D9-A6EG-06 7 2687222 2687222 G A TTYH3 Silent p.A192A 0.42 TCGA-D9-A6EG-06 7 2687223 2687223 G C TTYH3 Missense_Mutation p.V193L 0.38 tolerated(0.26) benign(0.008) TCGA-D9-A6EG-06 7 92826821 92826821 C T HEPACAM2 Nonsense_Mutation p.W372* 0.25 TCGA-D9-A6EG-06 7 95222120 95222120 G A PDK4 Nonsense_Mutation p.R161* 0.25 TCGA-D9-A6EG-06 8 30702623 30702623 G A TEX15 Missense_Mutation p.P1304L 0.58 tolerated(0.06) possibly_damaging(0.755) TCGA-D9-A6EG-06 8 37553731 37553734 CCCC - ZNF703 Frame_Shift_Del p.S78Rfs*62 0.21 TCGA-D9-A6EG-06 9 110248119 110248119 C T KLF4 Silent p.T451T 0.39 TCGA-D9-A6EG-06 9 119567944 119567944 A C ASTN2 Missense_Mutation p.V737G 0.42 deleterious(0.01) unknown(0) TCGA-D9-A6EG-06 9 14750147 14750147 C T FREM1 Silent p.V1845V 0.81 TCGA-D9-A6EG-06 9 4572297 4572297 A T SLC1A1 Missense_Mutation p.I226F 0.80 deleterious(0) possibly_damaging(0.479) TCGA-D9-A6EG-06 X 150349669 150349669 G A GPR50 Silent p.E538E 0.88 TCGA-D9-A6EG-06 X 72434219 72434219 G A NAP1L2 Missense_Mutation p.A37V 0.07 tolerated_low_confidence(0.22) benign(0.002) TCGA-D9-A6EG-06 X 99933442 99933442 C T SYTL4 Missense_Mutation p.E605K 0.90 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 10 101601754 101601754 G A ABCC2 Silent p.G1215G 0.58 TCGA-DA-A1HV-06 10 102239735 102239735 C T WNT8B Silent p.A69A 0.27 TCGA-DA-A1HV-06 10 104139304 104139304 C G GBF1 Missense_Mutation p.R1557G 0.48 deleterious(0) probably_damaging(0.994) TCGA-DA-A1HV-06 10 104175860 104175860 G A PSD Missense_Mutation p.S224F 0.60 tolerated_low_confidence(0.68) benign(0.002) TCGA-DA-A1HV-06 10 105648836 105648836 G A OBFC1 Missense_Mutation p.P315S 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A1HV-06 10 106118186 106118186 G A CCDC147 Missense_Mutation p.D33N 0.48 deleterious(0.03) benign(0.31) TCGA-DA-A1HV-06 10 113915751 113915751 A T GPAM Missense_Mutation p.L728M 0.29 tolerated(0.15) possibly_damaging(0.668) TCGA-DA-A1HV-06 10 114192030 114192030 C G ZDHHC6 Missense_Mutation p.G369A 0.31 deleterious(0.01) probably_damaging(0.968) TCGA-DA-A1HV-06 10 115343020 115343020 G A HABP2 Silent p.L380L 0.24 TCGA-DA-A1HV-06 10 115410288 115410288 T C NRAP Missense_Mutation p.D231G 0.57 tolerated(0.12) benign(0.297) TCGA-DA-A1HV-06 10 115489342 115489342 C T CASP7 3'UTR 0.58 TCGA-DA-A1HV-06 10 115636427 115636427 C T NHLRC2 Missense_Mutation p.S160F 0.46 deleterious(0) probably_damaging(0.944) TCGA-DA-A1HV-06 10 116032518 116032518 G A VWA2 Missense_Mutation p.E131K 0.23 deleterious(0) benign(0.001) TCGA-DA-A1HV-06 10 116032655 116032655 G A VWA2 Silent p.R176R 0.39 TCGA-DA-A1HV-06 10 119003718 119003718 G A SLC18A2 Missense_Mutation p.E120K 0.48 tolerated(0.68) benign(0.018) TCGA-DA-A1HV-06 10 12129677 12129677 C T DHTKD1 Silent p.P222P 0.27 TCGA-DA-A1HV-06 10 123245021 123245021 C T FGFR2 Missense_Mutation p.E696K 0.28 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 10 124339144 124339144 C T DMBT1 Nonsense_Mutation p.R244* 0.24 TCGA-DA-A1HV-06 10 124345579 124345579 C T DMBT1 Missense_Mutation p.S488F 0.47 tolerated(0.19) unknown(0) TCGA-DA-A1HV-06 10 124345750 124345750 G A DMBT1 Missense_Mutation p.G545E 0.47 tolerated(0.07) unknown(0) TCGA-DA-A1HV-06 10 124345822 124345822 A T DMBT1 Missense_Mutation p.Y569F 0.33 tolerated(0.41) unknown(0) TCGA-DA-A1HV-06 10 124402684 124402684 C T DMBT1 Missense_Mutation p.R2338C 0.31 deleterious(0.02) probably_damaging(0.912) TCGA-DA-A1HV-06 10 124591784 124591784 G A CUZD1 3'UTR 0.24 TCGA-DA-A1HV-06 10 125434403 125434403 C T GPR26 Silent p.F246F 0.35 TCGA-DA-A1HV-06 10 125528107 125528107 C T CPXM2 Missense_Mutation p.E412K 0.51 tolerated(0.3) possibly_damaging(0.622) TCGA-DA-A1HV-06 10 125558698 125558698 G A CPXM2 Missense_Mutation p.S224F 0.23 deleterious(0) probably_damaging(0.938) TCGA-DA-A1HV-06 10 126172829 126172829 C T LHPP Missense_Mutation p.P83S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HV-06 10 127436490 127436490 C T EDRF1 Missense_Mutation p.S1011L 0.45 tolerated(0.13) benign(0.002) TCGA-DA-A1HV-06 10 129183058 129183058 C T DOCK1 Missense_Mutation p.S1250L 0.19 deleterious(0.03) possibly_damaging(0.682) TCGA-DA-A1HV-06 10 13217570 13217570 C T MCM10 Missense_Mutation p.S219F 0.25 deleterious(0) benign(0.141) TCGA-DA-A1HV-06 10 133930599 133930599 G A JAKMIP3 Missense_Mutation p.E52K 0.48 deleterious(0) probably_damaging(0.969) TCGA-DA-A1HV-06 10 135213098 135213098 C T MTG1 Silent p.S162S 0.17 TCGA-DA-A1HV-06 10 135439024 135439024 T A FRG2B Missense_Mutation p.E139V 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-DA-A1HV-06 10 15760852 15760852 C T ITGA8 Missense_Mutation p.D86N 0.40 tolerated(0.51) benign(0.019) TCGA-DA-A1HV-06 10 15824206 15824206 G A FAM188A Missense_Mutation p.S379F 0.38 deleterious(0.03) possibly_damaging(0.898) TCGA-DA-A1HV-06 10 17157520 17157520 G C CUBN Missense_Mutation p.R224G 0.51 tolerated(0.15) benign(0.241) TCGA-DA-A1HV-06 10 17362936 17362936 G A ST8SIA6 Missense_Mutation p.L380F 0.39 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 10 18270267 18270267 G A SLC39A12 Silent p.V317V 0.40 TCGA-DA-A1HV-06 10 18270268 18270268 G A SLC39A12 Missense_Mutation p.E318K 0.40 tolerated(0.24) benign(0.031) TCGA-DA-A1HV-06 10 20436754 20436754 G A PLXDC2 Missense_Mutation p.D236N 0.49 tolerated(0.19) probably_damaging(0.987) TCGA-DA-A1HV-06 10 25464844 25464844 G A GPR158 Silent p.L165L 0.13 TCGA-DA-A1HV-06 10 267225 267225 C T ZMYND11 Missense_Mutation p.H123Y 0.45 deleterious(0) probably_damaging(0.954) TCGA-DA-A1HV-06 10 27539014 27539014 G A RP11-85G18.6 RNA 0.23 TCGA-DA-A1HV-06 10 28101521 28101521 C T ARMC4 Missense_Mutation p.D1019N 0.23 tolerated(0.3) benign(0.094) TCGA-DA-A1HV-06 10 329246 329246 G A DIP2C Silent p.F1420F 0.47 TCGA-DA-A1HV-06 10 33559618 33559618 C T NRP1 Missense_Mutation p.E139K 0.48 deleterious(0) possibly_damaging(0.86) TCGA-DA-A1HV-06 10 35819114 35819114 C T CCNY Silent p.F174F 0.14 TCGA-DA-A1HV-06 10 43654270 43654270 C T CSGALNACT2 Missense_Mutation p.L257F 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-DA-A1HV-06 10 43654272 43654272 C A CSGALNACT2 Silent p.L257L 0.13 TCGA-DA-A1HV-06 10 45798742 45798742 G A OR13A1 3'UTR 0.40 TCGA-DA-A1HV-06 10 45907676 45907676 G A ALOX5 Missense_Mutation p.D157N 0.28 tolerated(0.11) benign(0.378) TCGA-DA-A1HV-06 10 48371305 48371305 C T ZNF488 Missense_Mutation p.S258L 0.45 deleterious(0) probably_damaging(0.953) TCGA-DA-A1HV-06 10 50531556 50531556 C T C10orf71 Silent p.V322V 0.20 TCGA-DA-A1HV-06 10 50740841 50740841 G A ERCC6-PGBD3 Missense_Mutation p.S57F 0.23 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DA-A1HV-06 10 50820007 50820007 C T SLC18A3 Silent p.F407F 0.19 TCGA-DA-A1HV-06 10 50946054 50946054 G A OGDHL Missense_Mutation p.S819F 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1HV-06 10 5149682 5149682 C T AKR1C3 Missense_Mutation p.S320L 0.23 tolerated(0.44) benign(0) TCGA-DA-A1HV-06 10 52390757 52390757 G A RP11-50E11.3 RNA 0.42 TCGA-DA-A1HV-06 10 54530483 54530483 G A MBL2 Missense_Mutation p.P84L 0.22 tolerated(0.37) benign(0.008) TCGA-DA-A1HV-06 10 55569295 55569295 C T PCDH15 Missense_Mutation p.R1522K 0.24 benign(0) TCGA-DA-A1HV-06 10 55582720 55582720 G A PCDH15 Missense_Mutation p.P1591L 0.23 tolerated_low_confidence(1) benign(0.002) TCGA-DA-A1HV-06 10 55582895 55582895 C T PCDH15 Missense_Mutation p.E1533K 0.34 deleterious_low_confidence(0.01) benign(0.049) TCGA-DA-A1HV-06 10 55782729 55782729 G A PCDH15 Missense_Mutation p.P817S 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 10 6061872 6061872 G A IL2RA Missense_Mutation p.R206C 0.45 tolerated(0.08) benign(0.157) TCGA-DA-A1HV-06 10 61432607 61432607 G A SLC16A9 Silent p.F87F 0.24 TCGA-DA-A1HV-06 10 61846602 61846602 C T ANK3 Missense_Mutation p.G1194E 0.52 probably_damaging(1) TCGA-DA-A1HV-06 10 69556866 69556866 G A DNAJC12 3'UTR 0.56 TCGA-DA-A1HV-06 10 69571252 69571252 A G DNAJC12 Intron 0.42 TCGA-DA-A1HV-06 10 69961631 69961631 A G MYPN Missense_Mutation p.N1180S 0.59 deleterious(0.02) probably_damaging(0.994) TCGA-DA-A1HV-06 10 71678065 71678065 G A COL13A1 Missense_Mutation p.G341R 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1HV-06 10 71880917 71880917 G A AIFM2 Silent p.F115F 0.56 TCGA-DA-A1HV-06 10 72083683 72083683 G A LRRC20 Silent p.F112F 0.21 TCGA-DA-A1HV-06 10 73082808 73082808 C T SLC29A3 Silent p.I99I 0.38 TCGA-DA-A1HV-06 10 73453962 73453962 C T CDH23 Silent p.I337I 0.28 TCGA-DA-A1HV-06 10 73830155 73830155 C T SPOCK2 Missense_Mutation p.G130E 0.27 tolerated(0.13) probably_damaging(0.972) TCGA-DA-A1HV-06 10 74128021 74128021 G A MICU1 Missense_Mutation p.R455C 0.38 deleterious(0) probably_damaging(0.972) TCGA-DA-A1HV-06 10 74714267 74714267 C T PLA2G12B Silent p.G59G 0.21 TCGA-DA-A1HV-06 10 75857083 75857083 G A VCL Missense_Mutation p.R622K 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1HV-06 10 81192376 81192376 G A ZCCHC24 Missense_Mutation p.P129S 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 10 81841898 81841898 C T TMEM254 Intron 0.48 TCGA-DA-A1HV-06 10 82122302 82122302 C T DYDC2 Missense_Mutation p.H49Y 0.49 tolerated(0.08) benign(0.334) TCGA-DA-A1HV-06 10 85974117 85974117 C T CDHR1 Missense_Mutation p.P774S 0.21 tolerated_low_confidence(0.2) benign(0.009) TCGA-DA-A1HV-06 10 86001151 86001151 C T LRIT1 Nonsense_Mutation p.W15* 0.81 TCGA-DA-A1HV-06 10 86001152 86001152 C T LRIT1 Nonsense_Mutation p.W15* 0.80 TCGA-DA-A1HV-06 10 863676 863676 A T LARP4B Missense_Mutation p.S562T 0.44 tolerated(0.39) benign(0.003) TCGA-DA-A1HV-06 10 87362365 87362365 C T GRID1 Missense_Mutation p.E899K 0.55 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-DA-A1HV-06 10 88260189 88260189 G A WAPAL Nonsense_Mutation p.R271* 0.33 TCGA-DA-A1HV-06 10 92509065 92509065 G A HTR7 Missense_Mutation p.P276S 0.50 tolerated(0.61) benign(0.012) TCGA-DA-A1HV-06 10 93390068 93390068 G A PPP1R3C Silent p.F190F 0.43 TCGA-DA-A1HV-06 10 95079655 95079655 C T MYOF Missense_Mutation p.E1858K 0.51 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 10 95556907 95556907 G A LGI1 Missense_Mutation p.E341K 0.49 deleterious(0.04) benign(0.063) TCGA-DA-A1HV-06 10 96466555 96466555 C T CYP2C18 Silent p.F219F 0.56 TCGA-DA-A1HV-06 10 96484284 96484284 C T CYP2C18 Silent p.I381I 0.15 TCGA-DA-A1HV-06 10 96493119 96493119 G A CYP2C18 Silent p.E405E 0.17 TCGA-DA-A1HV-06 10 96535151 96535151 C T CYP2C19 Silent p.I112I 0.12 TCGA-DA-A1HV-06 10 96535195 96535195 C T CYP2C19 Missense_Mutation p.S127F 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-DA-A1HV-06 10 96540335 96540335 C T CYP2C19 Silent p.F187F 0.18 TCGA-DA-A1HV-06 10 96602681 96602681 C T CYP2C19 Missense_Mutation p.A350V 0.55 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 10 98180820 98180820 T G TLL2 Splice_Site p.X273_splice 0.16 TCGA-DA-A1HV-06 10 98764533 98764533 G A SLIT1 Silent p.N1209N 0.09 TCGA-DA-A1HV-06 10 98790525 98790525 G A SLIT1 Silent p.S857S 0.70 TCGA-DA-A1HV-06 10 98790526 98790526 G A SLIT1 Missense_Mutation p.S857F 0.71 deleterious(0) possibly_damaging(0.719) TCGA-DA-A1HV-06 11 10015515 10015515 G A SBF2 Missense_Mutation p.H336Y 0.60 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 11 102709901 102709901 G A MMP3 Missense_Mutation p.P337S 0.61 deleterious(0.02) probably_damaging(0.99) TCGA-DA-A1HV-06 11 102991455 102991455 T A DYNC2H1 Missense_Mutation p.I391N 0.82 benign(0.104) TCGA-DA-A1HV-06 11 107299846 107299846 G A CWF19L2 Missense_Mutation p.P371L 0.64 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 11 111430975 111430975 C T LAYN Missense_Mutation p.S314L 0.68 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 11 118083243 118083243 G A AMICA1 Missense_Mutation p.S26F 0.76 deleterious(0.05) possibly_damaging(0.908) TCGA-DA-A1HV-06 11 118770160 118770160 G A BCL9L Missense_Mutation p.P1155L 0.71 probably_damaging(0.998) TCGA-DA-A1HV-06 11 120298859 120298859 C T ARHGEF12 Missense_Mutation p.P163L 0.63 tolerated(0.27) benign(0.001) TCGA-DA-A1HV-06 11 120980156 120980156 C T TECTA Silent p.F145F 0.54 TCGA-DA-A1HV-06 11 121428058 121428058 C T SORL1 Silent p.I869I 0.64 TCGA-DA-A1HV-06 11 121498459 121498459 C T SORL1 Missense_Mutation p.S2187F 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HV-06 11 123471203 123471203 G A GRAMD1B Missense_Mutation p.D190N 0.56 deleterious(0) benign(0.388) TCGA-DA-A1HV-06 11 123777788 123777788 C T OR8D4 Missense_Mutation p.S217L 0.58 deleterious(0) possibly_damaging(0.735) TCGA-DA-A1HV-06 11 123810703 123810703 C T OR4D5 Missense_Mutation p.S127F 0.58 tolerated(0.06) benign(0.424) TCGA-DA-A1HV-06 11 123811173 123811173 C T OR4D5 Missense_Mutation p.P284S 0.68 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 11 123909399 123909399 G A OR10G7 Missense_Mutation p.H104Y 0.20 deleterious(0.01) benign(0.033) TCGA-DA-A1HV-06 11 124293853 124293853 C T OR8B4 Silent p.K305K 0.40 TCGA-DA-A1HV-06 11 124294693 124294693 G A OR8B4 Silent p.L25L 0.61 TCGA-DA-A1HV-06 11 130068280 130068280 G A ST14 Missense_Mutation p.D513N 0.81 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1HV-06 11 130069969 130069969 C T ST14 Missense_Mutation p.S644F 0.68 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 11 130278365 130278365 G A ADAMTS8 Missense_Mutation p.P698L 0.62 deleterious(0.02) benign(0.315) TCGA-DA-A1HV-06 11 130284431 130284431 G A ADAMTS8 Missense_Mutation p.P521S 0.61 tolerated(0.4) benign(0.05) TCGA-DA-A1HV-06 11 14508035 14508035 G A COPB1 Missense_Mutation p.P239S 0.59 tolerated(0.27) probably_damaging(0.913) TCGA-DA-A1HV-06 11 18048056 18048056 G A TPH1 Missense_Mutation p.P262S 0.66 deleterious(0) probably_damaging(0.974) TCGA-DA-A1HV-06 11 18955842 18955842 G A MRGPRX1 Silent p.L164L 0.19 TCGA-DA-A1HV-06 11 20178065 20178065 C T DBX1 Missense_Mutation p.E282K 0.45 deleterious(0.01) probably_damaging(0.922) TCGA-DA-A1HV-06 11 20805242 20805242 C T NELL1 Silent p.I67I 0.59 TCGA-DA-A1HV-06 11 2424460 2424460 C T TSSC4 Silent p.S199S 0.63 TCGA-DA-A1HV-06 11 30439117 30439117 C T MPPED2 Nonsense_Mutation p.W200* 0.68 TCGA-DA-A1HV-06 11 32979458 32979458 C T QSER1 Missense_Mutation p.P1470S 0.71 tolerated(0.09) benign(0.031) TCGA-DA-A1HV-06 11 4608130 4608130 C T OR52I2 Missense_Mutation p.P30S 0.75 tolerated(0.44) benign(0.009) TCGA-DA-A1HV-06 11 4621530 4621530 G A TRIM68 Silent p.I478I 0.83 TCGA-DA-A1HV-06 11 4703590 4703590 C T OR51E2 Missense_Mutation p.A118T 0.57 deleterious(0) benign(0.419) TCGA-DA-A1HV-06 11 48347047 48347047 C T OR4C3 Silent p.L185L 0.28 TCGA-DA-A1HV-06 11 49831763 49831763 C T RP11-707M1.1 RNA 0.59 TCGA-DA-A1HV-06 11 51411617 51411617 G A OR4A5 Missense_Mutation p.S260L 0.55 deleterious_low_confidence(0.04) benign(0.248) TCGA-DA-A1HV-06 11 5246795 5246795 C T HBB 3'UTR 0.65 TCGA-DA-A1HV-06 11 5372760 5372760 C T OR51B6 Missense_Mutation p.S8F 0.67 tolerated(0.05) benign(0.003) TCGA-DA-A1HV-06 11 5530396 5530396 G A UBQLN3 Silent p.A131A 0.60 TCGA-DA-A1HV-06 11 55762055 55762055 C T OR5F1 Missense_Mutation p.G16E 0.57 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 11 56020000 56020000 C T OR5T3 Missense_Mutation p.P109S 0.69 deleterious(0.01) possibly_damaging(0.601) TCGA-DA-A1HV-06 11 56020208 56020208 C T OR5T3 Missense_Mutation p.S178F 0.65 deleterious(0.01) benign(0.429) TCGA-DA-A1HV-06 11 56114057 56114057 C T OR8K1 Silent p.S181S 0.61 TCGA-DA-A1HV-06 11 57003285 57003285 G A APLNR 3'UTR 0.67 TCGA-DA-A1HV-06 11 57003286 57003286 G A APLNR 3'UTR 0.62 TCGA-DA-A1HV-06 11 57958210 57958210 C T OR9Q2 Missense_Mutation p.A83V 0.59 tolerated(0.58) benign(0.014) TCGA-DA-A1HV-06 11 58170161 58170161 G A OR5B3 Missense_Mutation p.S241F 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-DA-A1HV-06 11 59224811 59224811 C T OR4D6 Silent p.I126I 0.66 TCGA-DA-A1HV-06 11 59604768 59604768 C T GIF Silent p.T250T 0.59 TCGA-DA-A1HV-06 11 60714147 60714147 G A SLC15A3 Silent p.G235G 0.73 TCGA-DA-A1HV-06 11 6129686 6129686 A G OR56B4 Silent p.V226V 0.61 TCGA-DA-A1HV-06 11 62343574 62343574 C T TUT1 Silent p.L577L 0.61 TCGA-DA-A1HV-06 11 6290959 6290959 G A CCKBR Missense_Mutation p.G71E 0.66 deleterious(0.04) probably_damaging(0.919) TCGA-DA-A1HV-06 11 62996844 62996844 G A SLC22A25 Missense_Mutation p.P94L 0.67 deleterious(0.02) benign(0.216) TCGA-DA-A1HV-06 11 63057643 63057643 C T SLC22A10 Silent p.A2A 0.50 TCGA-DA-A1HV-06 11 64985149 64985149 C T SLC22A20 RNA 0.43 TCGA-DA-A1HV-06 11 65062070 65062070 C T POLA2 Silent p.F469F 0.52 TCGA-DA-A1HV-06 11 65632505 65632505 C T MUS81 Silent p.S430S 0.59 TCGA-DA-A1HV-06 11 6588704 6588704 G A DNHD1 Missense_Mutation p.E3989K 0.50 probably_damaging(0.993) TCGA-DA-A1HV-06 11 66204342 66204342 G A MRPL11 Intron 0.69 TCGA-DA-A1HV-06 11 66272217 66272217 C T DPP3 Silent p.L671L 0.59 TCGA-DA-A1HV-06 11 6653573 6653573 C T DCHS1 Missense_Mutation p.R1057Q 0.67 tolerated(0.15) benign(0.02) TCGA-DA-A1HV-06 11 67262928 67262928 G T PITPNM1 Silent p.T821T 0.89 TCGA-DA-A1HV-06 11 68153787 68153787 C T LRP5 Missense_Mutation p.A340V 0.53 tolerated(0.1) benign(0.175) TCGA-DA-A1HV-06 11 68367904 68367904 C T PPP6R3 Missense_Mutation p.P712S 0.53 tolerated(0.37) benign(0.004) TCGA-DA-A1HV-06 11 69972296 69972296 C T ANO1 Silent p.I364I 0.53 TCGA-DA-A1HV-06 11 7110495 7110495 G A RBMXL2 Silent p.S48S 0.90 TCGA-DA-A1HV-06 11 723275 723275 C T EPS8L2 Missense_Mutation p.S459F 0.50 tolerated(0.16) benign(0.234) TCGA-DA-A1HV-06 11 73879454 73879454 G A C2CD3 Missense_Mutation p.A87V 0.74 tolerated(0.09) benign(0.073) TCGA-DA-A1HV-06 11 73879531 73879531 G A C2CD3 Silent p.V61V 0.60 TCGA-DA-A1HV-06 11 86119298 86119298 C T CCDC81 Missense_Mutation p.L367F 0.71 tolerated(0.41) benign(0.024) TCGA-DA-A1HV-06 11 89774369 89774369 C G TRIM49C Missense_Mutation p.T337S 0.46 tolerated(0.22) benign(0.027) TCGA-DA-A1HV-06 11 9202465 9202465 A G DENND5A Missense_Mutation p.L435P 0.60 tolerated(0.22) benign(0.008) TCGA-DA-A1HV-06 11 92085391 92085391 C T FAT3 Missense_Mutation p.P38L 0.55 benign(0.002) TCGA-DA-A1HV-06 11 92714776 92714776 C T MTNR1B Silent p.F129F 0.63 TCGA-DA-A1HV-06 11 92714955 92714955 C T MTNR1B Missense_Mutation p.S189F 0.62 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1HV-06 11 94039753 94039753 C T FOLR4 Silent p.L71L 0.60 TCGA-DA-A1HV-06 12 100897247 100897247 G A NR1H4 Missense_Mutation p.E28K 0.16 tolerated_low_confidence(0.09) benign(0.021) TCGA-DA-A1HV-06 12 103234196 103234196 A G PAH Silent p.L433L 0.15 TCGA-DA-A1HV-06 12 104048356 104048356 C T STAB2 Silent p.L477L 0.52 TCGA-DA-A1HV-06 12 104109592 104109592 G A STAB2 Splice_Site p.X1513_splice 0.10 TCGA-DA-A1HV-06 12 104376612 104376612 C T TDG Nonsense_Mutation p.Q172* 0.33 TCGA-DA-A1HV-06 12 105282952 105282952 G A SLC41A2 Nonsense_Mutation p.Q247* 0.59 TCGA-DA-A1HV-06 12 113907000 113907000 G A LHX5 Silent p.I108I 0.35 TCGA-DA-A1HV-06 12 114386824 114386824 C T RBM19 Missense_Mutation p.V364M 0.42 deleterious(0.02) possibly_damaging(0.821) TCGA-DA-A1HV-06 12 119960745 119960745 G C CCDC60 Missense_Mutation p.E348Q 0.43 tolerated(0.18) possibly_damaging(0.635) TCGA-DA-A1HV-06 12 122674858 122674858 G A LRRC43 Missense_Mutation p.D282N 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 12 122677530 122677530 C T LRRC43 Missense_Mutation p.P443L 0.64 tolerated(0.14) probably_damaging(0.998) TCGA-DA-A1HV-06 12 123900350 123900350 C T RILPL2 3'UTR 0.26 TCGA-DA-A1HV-06 12 124298405 124298405 C T DNAH10 Silent p.L1124L 0.11 TCGA-DA-A1HV-06 12 126138590 126138590 G A TMEM132B Silent p.K857K 0.11 TCGA-DA-A1HV-06 12 126138969 126138969 C T TMEM132B Missense_Mutation p.L984F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 12 130929789 130929789 C T RIMBP2 Missense_Mutation p.E186K 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 12 13215833 13215833 C G KIAA1467 Missense_Mutation p.A259G 0.09 tolerated(0.06) possibly_damaging(0.62) TCGA-DA-A1HV-06 12 132466722 132466722 C T EP400 Missense_Mutation p.P543L 0.20 unknown(0) TCGA-DA-A1HV-06 12 132466723 132466723 C T EP400 Silent p.P543P 0.19 TCGA-DA-A1HV-06 12 15262435 15262435 C T RERG Missense_Mutation p.R70K 0.59 tolerated(1) benign(0.008) TCGA-DA-A1HV-06 12 176501 176501 G A IQSEC3 Silent p.K151K 0.11 TCGA-DA-A1HV-06 12 18793432 18793432 C T PIK3C2G Missense_Mutation p.R1377C 0.93 deleterious(0.02) benign(0.015) TCGA-DA-A1HV-06 12 19406906 19406906 C T PLEKHA5 Missense_Mutation p.P87L 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 12 21054389 21054389 C T SLCO1B3 Missense_Mutation p.S618F 0.28 deleterious(0) probably_damaging(0.987) TCGA-DA-A1HV-06 12 21242995 21242995 C G SLCO1B7 Missense_Mutation p.F626L 0.25 tolerated(0.49) benign(0.006) TCGA-DA-A1HV-06 12 2676850 2676850 C T CACNA1C Silent p.V595V 0.57 TCGA-DA-A1HV-06 12 26875362 26875362 G A ITPR2 Missense_Mutation p.P165S 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A1HV-06 12 27148241 27148241 T C TM7SF3 Missense_Mutation p.T207A 0.41 tolerated(0.06) benign(0.004) TCGA-DA-A1HV-06 12 27841288 27841288 C T PPFIBP1 Silent p.L816L 0.30 TCGA-DA-A1HV-06 12 31236788 31236788 C T DDX11 Silent p.L62L 0.32 TCGA-DA-A1HV-06 12 32135112 32135112 C T KIAA1551 Missense_Mutation p.S408L 0.30 tolerated(0.28) benign(0.081) TCGA-DA-A1HV-06 12 33031217 33031217 G A PKP2 Silent p.I199I 0.27 TCGA-DA-A1HV-06 12 344277 344277 G A SLC6A13 Silent p.L270L 0.60 TCGA-DA-A1HV-06 12 39973389 39973389 G A ABCD2 Silent p.L609L 0.36 TCGA-DA-A1HV-06 12 48142295 48142295 C T RAPGEF3 Silent p.K395K 0.22 TCGA-DA-A1HV-06 12 48482619 48482619 G A SENP1 Silent p.S115S 0.30 TCGA-DA-A1HV-06 12 4920359 4920359 C T KCNA6 Silent p.F384F 0.55 TCGA-DA-A1HV-06 12 49422739 49422739 A T KMT2D Missense_Mutation p.F4752I 0.14 unknown(0) TCGA-DA-A1HV-06 12 51138597 51138597 C T DIP2B Missense_Mutation p.P1569L 0.54 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HV-06 12 51754529 51754529 C T GALNT6 Silent p.G381G 0.55 TCGA-DA-A1HV-06 12 52635367 52635367 G A KRT7 Missense_Mutation p.E269K 0.56 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 12 52639340 52639340 G A KRT7 Missense_Mutation p.E377K 0.45 deleterious(0) possibly_damaging(0.833) TCGA-DA-A1HV-06 12 52714792 52714792 C T KRT83 Missense_Mutation p.E110K 0.42 deleterious(0.01) benign(0.169) TCGA-DA-A1HV-06 12 52886761 52886761 G A KRT6A Missense_Mutation p.S71F 0.21 deleterious(0) unknown(0) TCGA-DA-A1HV-06 12 52981534 52981534 G C KRT72 Missense_Mutation p.H397Q 0.19 tolerated(1) benign(0.006) TCGA-DA-A1HV-06 12 53011970 53011970 G A KRT73 Silent p.L113L 0.27 TCGA-DA-A1HV-06 12 53202523 53202523 C T KRT4 Missense_Mutation p.E316K 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1HV-06 12 53242420 53242420 C T KRT78 Missense_Mutation p.E99K 0.18 deleterious(0.02) possibly_damaging(0.507) TCGA-DA-A1HV-06 12 53823728 53823728 G A AMHR2 Nonsense_Mutation p.W418* 0.18 TCGA-DA-A1HV-06 12 54367345 54367345 C T HOXC11 Missense_Mutation p.P107L 0.48 deleterious(0) probably_damaging(0.957) TCGA-DA-A1HV-06 12 54577461 54577461 A C SMUG1 Silent p.P88P 0.27 TCGA-DA-A1HV-06 12 55357661 55357661 C T TESPA1 Missense_Mutation p.D174N 0.17 tolerated(0.12) benign(0.02) TCGA-DA-A1HV-06 12 55420282 55420282 G A NEUROD4 Nonsense_Mutation p.W20* 0.27 TCGA-DA-A1HV-06 12 55714423 55714423 G A OR6C1 Missense_Mutation p.G14R 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A1HV-06 12 55846554 55846554 C T OR6C2 Missense_Mutation p.S186L 0.44 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-DA-A1HV-06 12 56350935 56350935 G A PMEL Silent p.V384V 0.21 TCGA-DA-A1HV-06 12 56625278 56625278 C T SLC39A5 Missense_Mutation p.R74C 0.34 deleterious(0) possibly_damaging(0.874) TCGA-DA-A1HV-06 12 56845043 56845043 C T MIP 3'UTR 0.19 TCGA-DA-A1HV-06 12 57389900 57389900 G A GPR182 Missense_Mutation p.D303N 0.62 tolerated(0.08) possibly_damaging(0.845) TCGA-DA-A1HV-06 12 57598428 57598428 C T LRP1 Missense_Mutation p.P3697L 0.15 probably_damaging(0.999) TCGA-DA-A1HV-06 12 57843354 57843354 G A INHBC Missense_Mutation p.G203D 0.48 tolerated(0.61) benign(0.213) TCGA-DA-A1HV-06 12 57870159 57870159 G A ARHGAP9 Silent p.P368P 0.35 TCGA-DA-A1HV-06 12 58152599 58152599 C T MARCH9 Silent p.L320L 0.13 TCGA-DA-A1HV-06 12 60169011 60169011 G A SLC16A7 Missense_Mutation p.R312Q 0.11 deleterious(0.02) possibly_damaging(0.842) TCGA-DA-A1HV-06 12 6061606 6061606 C T VWF Missense_Mutation p.R2689K 0.57 tolerated(0.3) benign(0.364) TCGA-DA-A1HV-06 12 62261132 62261132 C T FAM19A2 Silent p.G25G 0.39 TCGA-DA-A1HV-06 12 68645343 68645343 C T IL22 Missense_Mutation p.D138N 0.45 tolerated(0.66) benign(0.012) TCGA-DA-A1HV-06 12 6936244 6936244 G T GPR162 Missense_Mutation p.V548F 0.63 tolerated_low_confidence(0.06) benign(0.009) TCGA-DA-A1HV-06 12 70004303 70004303 C T LRRC10 Missense_Mutation p.G106S 0.13 deleterious(0.04) probably_damaging(0.995) TCGA-DA-A1HV-06 12 7362423 7362423 C T PEX5 Missense_Mutation p.L584F 0.60 deleterious(0) probably_damaging(0.965) TCGA-DA-A1HV-06 12 7551065 7551065 C T CD163L1 Silent p.R508R 0.56 TCGA-DA-A1HV-06 12 79689860 79689860 G A SYT1 Silent p.G162G 0.24 TCGA-DA-A1HV-06 12 79837866 79837866 G A SYT1 Silent p.K314K 0.30 TCGA-DA-A1HV-06 12 8050937 8050937 G A NANOGP1 RNA 0.64 TCGA-DA-A1HV-06 12 81101673 81101673 G A MYF6 Missense_Mutation p.E59K 0.20 tolerated(0.12) probably_damaging(0.992) TCGA-DA-A1HV-06 12 81112674 81112674 G A MYF5 Silent p.L204L 0.56 TCGA-DA-A1HV-06 12 81661707 81661707 G A PPFIA2 Missense_Mutation p.P1157L 0.50 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HV-06 12 83359409 83359409 A C TMTC2 Missense_Mutation p.L585F 0.54 tolerated(0.07) possibly_damaging(0.579) TCGA-DA-A1HV-06 12 83359457 83359457 C T TMTC2 Silent p.H601H 0.55 TCGA-DA-A1HV-06 12 8630076 8630076 G A CLEC6A 3'UTR 0.63 TCGA-DA-A1HV-06 12 88388520 88388520 C T C12orf50 Missense_Mutation p.G161E 0.19 tolerated(0.09) probably_damaging(1) TCGA-DA-A1HV-06 12 9246161 9246161 C T A2M Missense_Mutation p.G714R 0.68 tolerated(0.3) benign(0.001) TCGA-DA-A1HV-06 12 9246162 9246162 C T A2M Missense_Mutation p.M713I 0.67 tolerated(0.44) benign(0) TCGA-DA-A1HV-06 12 9265965 9265965 G A A2M Silent p.V87V 0.63 TCGA-DA-A1HV-06 12 97078499 97078499 C T C12orf55 Silent p.F1930F 0.58 TCGA-DA-A1HV-06 12 99043447 99043447 C T APAF1 Missense_Mutation p.H171Y 0.44 tolerated(0.09) benign(0.008) TCGA-DA-A1HV-06 13 100020071 100020071 C T UBAC2 Missense_Mutation p.P280S 0.64 tolerated(0.15) benign(0.03) TCGA-DA-A1HV-06 13 103418798 103418798 A T TEX30 Missense_Mutation p.L213M 0.53 tolerated(0.06) possibly_damaging(0.642) TCGA-DA-A1HV-06 13 108518740 108518740 C T FAM155A Missense_Mutation p.D69N 0.70 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1HV-06 13 109475607 109475607 C T MYO16 Missense_Mutation p.P338S 0.55 tolerated(0.13) benign(0.065) TCGA-DA-A1HV-06 13 113679037 113679037 C T MCF2L Silent p.F81F 0.53 TCGA-DA-A1HV-06 13 114193764 114193764 C T TMCO3 Silent p.I544I 0.43 TCGA-DA-A1HV-06 13 114507929 114507929 C T TMEM255B Silent p.I247I 0.65 TCGA-DA-A1HV-06 13 114748764 114748764 G A RASA3 Silent p.S833S 0.60 TCGA-DA-A1HV-06 13 19748108 19748108 C T TUBA3C Silent p.G416G 0.68 TCGA-DA-A1HV-06 13 25487158 25487158 G A CENPJ Silent p.F2F 0.63 TCGA-DA-A1HV-06 13 26163833 26163833 T G ATP8A2 Missense_Mutation p.L736W 0.55 deleterious(0.01) probably_damaging(0.976) TCGA-DA-A1HV-06 13 27333865 27333865 G A GPR12 Missense_Mutation p.P34S 0.43 tolerated(0.21) probably_damaging(0.968) TCGA-DA-A1HV-06 13 29012444 29012444 G A FLT1 Missense_Mutation p.P143S 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 13 29855896 29855896 G A MTUS2 Silent p.K910K 0.86 TCGA-DA-A1HV-06 13 32376410 32376410 G A RXFP2 Silent p.R711R 0.73 TCGA-DA-A1HV-06 13 32821520 32821520 C T FRY Missense_Mutation p.L2297F 0.61 deleterious(0.03) probably_damaging(0.994) TCGA-DA-A1HV-06 13 37446898 37446898 G A SMAD9 Silent p.L189L 0.57 TCGA-DA-A1HV-06 13 52660499 52660499 C T NEK5 Missense_Mutation p.E465K 0.60 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 13 74420329 74420329 G A KLF12 Missense_Mutation p.S102F 0.61 tolerated(0.19) possibly_damaging(0.641) TCGA-DA-A1HV-06 13 77651353 77651353 G A MYCBP2 Missense_Mutation p.S3847L 0.67 possibly_damaging(0.881) TCGA-DA-A1HV-06 13 78187059 78187059 C T SCEL Silent p.I457I 0.52 TCGA-DA-A1HV-06 13 94680006 94680006 C T GPC6 Silent p.I245I 0.59 TCGA-DA-A1HV-06 14 101507748 101507748 G A MIR300 RNA 0.60 TCGA-DA-A1HV-06 14 101531992 101531992 G A MIR369 RNA 0.53 TCGA-DA-A1HV-06 14 104575621 104575621 G A ASPG Missense_Mutation p.E497K 0.65 tolerated(0.09) probably_damaging(0.917) TCGA-DA-A1HV-06 14 105404794 105404794 G A AHNAK2 Missense_Mutation p.S5665F 0.67 possibly_damaging(0.733) TCGA-DA-A1HV-06 14 19573100 19573100 G T POTEG Nonsense_Mutation p.E400* 0.11 TCGA-DA-A1HV-06 14 19988170 19988170 G A POTEM 3'UTR 0.31 TCGA-DA-A1HV-06 14 22102334 22102334 G A OR10G2 Missense_Mutation p.S222F 0.88 deleterious(0) possibly_damaging(0.903) TCGA-DA-A1HV-06 14 22192442 22192442 G A TRAV3 Missense_Mutation p.D73N 0.59 tolerated(1) benign(0.012) TCGA-DA-A1HV-06 14 22392573 22392573 C T TRAV14DV4 Silent p.F32F 0.69 TCGA-DA-A1HV-06 14 22392672 22392672 G A TRAV14DV4 Missense_Mutation p.M65I 0.63 TCGA-DA-A1HV-06 14 23793409 23793409 C T PABPN1 Silent p.A264A 0.65 TCGA-DA-A1HV-06 14 23793410 23793410 C T PABPN1 Missense_Mutation p.R265C 0.68 deleterious(0.01) benign(0.112) TCGA-DA-A1HV-06 14 23868226 23868226 G A MYH6 Silent p.I534I 0.65 TCGA-DA-A1HV-06 14 24653884 24653884 G A IPO4 Silent p.D536D 0.55 TCGA-DA-A1HV-06 14 28733846 28733846 G A BNIP3P1 RNA 0.61 TCGA-DA-A1HV-06 14 33836419 33836419 C T NPAS3 Missense_Mutation p.P138L 0.55 tolerated(0.06) possibly_damaging(0.713) TCGA-DA-A1HV-06 14 50199497 50199497 C T KLHDC1 Silent p.F262F 0.38 TCGA-DA-A1HV-06 14 50796864 50796864 G A CDKL1 Silent p.I335I 0.60 TCGA-DA-A1HV-06 14 52735046 52735046 G A PTGDR Missense_Mutation p.G172R 0.60 deleterious(0.04) probably_damaging(1) TCGA-DA-A1HV-06 14 52735047 52735047 G A PTGDR Missense_Mutation p.G172E 0.62 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HV-06 14 53197192 53197192 C T STYX 5'UTR 0.21 TCGA-DA-A1HV-06 14 53325055 53325055 A G FERMT2 3'UTR 0.25 TCGA-DA-A1HV-06 14 57960358 57960358 G A C14orf105 Missense_Mutation p.P26S 0.58 tolerated(0.22) benign(0.084) TCGA-DA-A1HV-06 14 58563465 58563465 C T C14orf37 Nonsense_Mutation p.W689* 0.55 TCGA-DA-A1HV-06 14 58833673 58833673 A - ARID4A Frame_Shift_Del p.Y1199Ffs*5 0.38 TCGA-DA-A1HV-06 14 59791090 59791090 C T DAAM1 Missense_Mutation p.H303Y 0.60 deleterious(0) unknown(0) TCGA-DA-A1HV-06 14 60193865 60193865 G A RTN1 Missense_Mutation p.R513W 0.67 deleterious(0) possibly_damaging(0.513) TCGA-DA-A1HV-06 14 62463079 62463079 G T SYT16 Missense_Mutation p.K114N 0.57 deleterious_low_confidence(0.02) benign(0.157) TCGA-DA-A1HV-06 14 62567416 62567416 G A SYT16 Silent p.L643L 0.65 TCGA-DA-A1HV-06 14 70418998 70418998 G A SMOC1 Silent p.V81V 0.64 TCGA-DA-A1HV-06 14 70990607 70990607 G A ADAM20 Nonsense_Mutation p.R340* 0.71 TCGA-DA-A1HV-06 14 73727967 73727967 C T PAPLN Missense_Mutation p.P710L 0.43 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 14 73989442 73989442 C T HEATR4 Missense_Mutation p.E139K 0.54 tolerated(0.21) benign(0.004) TCGA-DA-A1HV-06 14 74196554 74196554 G A ELMSAN1 Silent p.T628T 0.67 TCGA-DA-A1HV-06 14 74972753 74972753 C T LTBP2 Missense_Mutation p.G1392E 0.60 tolerated(0.46) possibly_damaging(0.543) TCGA-DA-A1HV-06 14 77948869 77948869 C T ISM2 Missense_Mutation p.E257K 0.65 tolerated(0.17) benign(0.001) TCGA-DA-A1HV-06 14 81304583 81304583 G A CEP128 Nonsense_Mutation p.Q297* 0.71 TCGA-DA-A1HV-06 14 81610058 81610058 C T TSHR Silent p.L552L 0.79 TCGA-DA-A1HV-06 14 86088320 86088320 C T FLRT2 Silent p.A154A 0.76 TCGA-DA-A1HV-06 14 92343989 92343989 C G FBLN5 Missense_Mutation p.D343H 0.58 deleterious(0.01) probably_damaging(0.96) TCGA-DA-A1HV-06 14 94754803 94754803 C T SERPINA10 Missense_Mutation p.G271D 0.54 deleterious(0.02) possibly_damaging(0.882) TCGA-DA-A1HV-06 14 95108170 95108170 C T SERPINA13P RNA 0.49 TCGA-DA-A1HV-06 14 95593004 95593004 C T DICER1 Missense_Mutation p.M272I 0.34 tolerated(0.19) benign(0) TCGA-DA-A1HV-06 14 96129881 96129881 C T TCL6 RNA 0.35 TCGA-DA-A1HV-06 15 100332708 100332708 G A AC090825.1 3'Flank 0.26 TCGA-DA-A1HV-06 15 22332633 22332633 C T RP11-69H14.6 RNA 0.10 TCGA-DA-A1HV-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.09 deleterious(0.01) benign(0.037) TCGA-DA-A1HV-06 15 22382571 22382571 T A OR4N4 Silent p.I33I 0.12 TCGA-DA-A1HV-06 15 22473351 22473351 C T IGHV4OR15-8 Translation_Start_Site p.M1? 0.30 deleterious(0.01) possibly_damaging(0.642) TCGA-DA-A1HV-06 15 23261906 23261906 G A GOLGA8I Missense_Mutation p.E340K 0.67 tolerated(1) benign(0.008) TCGA-DA-A1HV-06 15 24922328 24922328 C T NPAP1 Silent p.I438I 0.44 TCGA-DA-A1HV-06 15 24923400 24923400 C T NPAP1 Missense_Mutation p.P796S 0.31 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-DA-A1HV-06 15 24923731 24923731 G A NPAP1 Missense_Mutation p.G906E 0.31 tolerated(0.97) benign(0.012) TCGA-DA-A1HV-06 15 25299421 25299421 C T SNORD116-2 RNA 0.33 TCGA-DA-A1HV-06 15 25339111 25339111 C T SNORD116-25 5'Flank 0.33 TCGA-DA-A1HV-06 15 25339188 25339188 C T SNORD116-24 RNA 0.37 TCGA-DA-A1HV-06 15 25494411 25494411 G A SNORD115-43 RNA 0.29 TCGA-DA-A1HV-06 15 30026535 30026535 G A TJP1 Silent p.L487L 0.28 TCGA-DA-A1HV-06 15 30026536 30026536 G T TJP1 Missense_Mutation p.F486L 0.28 deleterious(0.02) benign(0.444) TCGA-DA-A1HV-06 15 34648565 34648565 G A NUTM1 Missense_Mutation p.G758S 0.33 tolerated(0.1) benign(0.091) TCGA-DA-A1HV-06 15 37187432 37187432 C A MEIS2 Missense_Mutation p.G356V 0.22 deleterious(0) possibly_damaging(0.806) TCGA-DA-A1HV-06 15 37187433 37187433 C T MEIS2 Missense_Mutation p.G356R 0.23 deleterious(0) probably_damaging(0.944) TCGA-DA-A1HV-06 15 39885345 39885345 C T THBS1 Missense_Mutation p.S971F 0.39 deleterious(0) possibly_damaging(0.86) TCGA-DA-A1HV-06 15 40591081 40591081 G A PLCB2 Silent p.S256S 0.37 TCGA-DA-A1HV-06 15 40594354 40594354 C T PLCB2 Silent p.G163G 0.35 TCGA-DA-A1HV-06 15 40764480 40764480 C T CHST14 Silent p.I356I 0.27 TCGA-DA-A1HV-06 15 41191361 41191361 C T VPS18 Silent p.A115A 0.26 TCGA-DA-A1HV-06 15 41223949 41223949 G A DLL4 Missense_Mutation p.E215K 0.42 tolerated(0.37) benign(0.019) TCGA-DA-A1HV-06 15 41799417 41799417 G A LTK Nonsense_Mutation p.R473* 0.31 TCGA-DA-A1HV-06 15 42158739 42158739 C T SPTBN5 Intron 0.33 TCGA-DA-A1HV-06 15 43531403 43531403 C T TGM5 Missense_Mutation p.G355S 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 15 43571345 43571345 G A TGM7 Silent p.I603I 0.16 TCGA-DA-A1HV-06 15 48539590 48539590 G A SLC12A1 Silent p.G539G 0.29 TCGA-DA-A1HV-06 15 48541797 48541797 C T SLC12A1 Silent p.I570I 0.28 TCGA-DA-A1HV-06 15 48738959 48738959 G A FBN1 Missense_Mutation p.S1911F 0.25 probably_damaging(0.911) TCGA-DA-A1HV-06 15 50158637 50158637 G A ATP8B4 Silent p.F1024F 0.46 TCGA-DA-A1HV-06 15 50339641 50339641 C T ATP8B4 Silent p.S36S 0.15 TCGA-DA-A1HV-06 15 50546441 50546441 C T HDC Silent p.L202L 0.29 TCGA-DA-A1HV-06 15 52497106 52497106 G A MYO5C Silent p.F1592F 0.43 TCGA-DA-A1HV-06 15 52534379 52534379 C T MYO5C Missense_Mutation p.A808T 0.20 tolerated(1) benign(0.03) TCGA-DA-A1HV-06 15 52536688 52536688 C T MYO5C Missense_Mutation p.R752Q 0.17 deleterious(0) probably_damaging(0.977) TCGA-DA-A1HV-06 15 55838929 55838929 G A PYGO1 Silent p.F184F 0.13 TCGA-DA-A1HV-06 15 56386044 56386044 A T RFX7 Silent p.P1294P 0.25 TCGA-DA-A1HV-06 15 57730548 57730548 G A CGNL1 Silent p.L117L 0.15 TCGA-DA-A1HV-06 15 57731424 57731424 G A CGNL1 Silent p.R409R 0.20 TCGA-DA-A1HV-06 15 57913897 57913897 C T MYZAP Missense_Mutation p.S137L 0.24 tolerated(0.07) benign(0.062) TCGA-DA-A1HV-06 15 58467154 58467154 C T AQP9 Silent p.I138I 0.17 TCGA-DA-A1HV-06 15 62182392 62182392 G A VPS13C Nonsense_Mutation p.Q3105* 0.23 TCGA-DA-A1HV-06 15 63047733 63047733 C T TLN2 Silent p.V1493V 0.31 TCGA-DA-A1HV-06 15 63127944 63127944 C T TLN2 Silent p.S2379S 0.19 TCGA-DA-A1HV-06 15 63966647 63966647 T G HERC1 Silent p.I2580I 0.24 TCGA-DA-A1HV-06 15 64968300 64968300 T C ZNF609 Silent p.L1083L 0.23 TCGA-DA-A1HV-06 15 66794230 66794230 G A RPL4 Missense_Mutation p.P148S 0.28 tolerated(0.17) benign(0.089) TCGA-DA-A1HV-06 15 68506701 68506701 G A CLN6 Missense_Mutation p.P75L 0.31 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 15 68582855 68582855 C T FEM1B Nonsense_Mutation p.R387* 0.16 TCGA-DA-A1HV-06 15 72338673 72338673 G A MYO9A Missense_Mutation p.P78S 0.19 tolerated(0.06) possibly_damaging(0.672) TCGA-DA-A1HV-06 15 72953609 72953609 C T GOLGA6B Missense_Mutation p.S190L 0.09 tolerated(0.14) benign(0) TCGA-DA-A1HV-06 15 73023677 73023677 C A BBS4 Missense_Mutation p.T248N 0.26 tolerated(0.36) benign(0.015) TCGA-DA-A1HV-06 15 74181454 74181454 C T TBC1D21 3'UTR 0.16 TCGA-DA-A1HV-06 15 74325046 74325046 C T PML Missense_Mutation p.S463F 0.29 tolerated(0.14) probably_damaging(0.975) TCGA-DA-A1HV-06 15 74468479 74468479 C T ISLR Missense_Mutation p.S427F 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-DA-A1HV-06 15 74494575 74494575 G A STRA6 Missense_Mutation p.P51S 0.28 tolerated(0.55) benign(0.005) TCGA-DA-A1HV-06 15 74631586 74631586 G A CYP11A1 Missense_Mutation p.P410S 0.15 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HV-06 15 76073154 76073154 G A RN7SL319P 5'Flank 0.16 TCGA-DA-A1HV-06 15 76073342 76073342 C T RN7SL319P 5'Flank 0.28 TCGA-DA-A1HV-06 15 78212383 78212383 G A RP11-114H24.7 Intron 0.27 TCGA-DA-A1HV-06 15 78640351 78640351 G A CRABP1 3'UTR 0.19 TCGA-DA-A1HV-06 15 78640352 78640352 G A CRABP1 3'UTR 0.19 TCGA-DA-A1HV-06 15 78834944 78834944 C T PSMA4 Missense_Mutation p.L56F 0.14 tolerated(0.09) probably_damaging(0.988) TCGA-DA-A1HV-06 15 79320162 79320162 C T RASGRF1 Silent p.R434R 0.20 TCGA-DA-A1HV-06 15 79339113 79339113 C T RASGRF1 Missense_Mutation p.D285N 0.21 deleterious(0) probably_damaging(0.985) TCGA-DA-A1HV-06 15 81585006 81585006 C T IL16 Silent p.S510S 0.15 TCGA-DA-A1HV-06 15 81592524 81592524 C T IL16 Nonsense_Mutation p.Q953* 0.50 TCGA-DA-A1HV-06 15 83455883 83455883 C T FSD2 Missense_Mutation p.G87E 0.08 tolerated(0.62) benign(0.007) TCGA-DA-A1HV-06 15 85461778 85461778 C T SLC28A1 Silent p.F273F 0.17 TCGA-DA-A1HV-06 15 88524538 88524538 C T NTRK3 Intron 0.38 TCGA-DA-A1HV-06 15 89382265 89382265 G A ACAN Missense_Mutation p.V148I 0.14 deleterious(0.04) unknown(0) TCGA-DA-A1HV-06 15 89399999 89399999 C T ACAN Missense_Mutation p.P1395S 0.27 tolerated(0.18) possibly_damaging(0.826) TCGA-DA-A1HV-06 15 89836049 89836049 C T FANCI Missense_Mutation p.S708F 0.14 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 15 90244956 90244956 G A WDR93 5'UTR 0.12 TCGA-DA-A1HV-06 15 91424816 91424816 T G FURIN Missense_Mutation p.V698G 0.23 tolerated(0.42) benign(0) TCGA-DA-A1HV-06 15 91434838 91434838 C T FES Missense_Mutation p.H529Y 0.14 tolerated(0.16) possibly_damaging(0.527) TCGA-DA-A1HV-06 15 91454398 91454398 C T MAN2A2 Intron 0.16 TCGA-DA-A1HV-06 15 91795075 91795075 G A SV2B Missense_Mutation p.A160T 0.18 deleterious(0.01) benign(0.155) TCGA-DA-A1HV-06 15 95013640 95013640 C T MCTP2 Silent p.F813F 0.23 TCGA-DA-A1HV-06 15 97328437 97328437 C T SPATA8 3'UTR 0.24 TCGA-DA-A1HV-06 16 10274188 10274188 C T GRIN2A Silent p.A27A 0.27 TCGA-DA-A1HV-06 16 10867224 10867224 C T TVP23A Missense_Mutation p.M133I 0.26 tolerated(0.55) benign(0.001) TCGA-DA-A1HV-06 16 11000490 11000490 G A CIITA Missense_Mutation p.E381K 0.44 deleterious(0) probably_damaging(0.983) TCGA-DA-A1HV-06 16 12223552 12223552 C T SNX29 Missense_Mutation p.T511I 0.73 tolerated(0.16) benign(0.028) TCGA-DA-A1HV-06 16 12492328 12492328 C T SNX29 Missense_Mutation p.S642F 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 16 1261966 1261966 C T CACNA1H Silent p.P1529P 0.43 TCGA-DA-A1HV-06 16 1537890 1537890 G A PTX4 Missense_Mutation p.R70W 0.21 tolerated(0.06) benign(0.247) TCGA-DA-A1HV-06 16 1537891 1537891 G A PTX4 Silent p.V69V 0.20 TCGA-DA-A1HV-06 16 15835746 15835746 C T MYH11 Silent p.V848V 0.51 TCGA-DA-A1HV-06 16 16263549 16263549 C T ABCC6 Silent p.Q983Q 0.59 TCGA-DA-A1HV-06 16 1820659 1820659 C T NME3 Silent p.L167L 0.60 TCGA-DA-A1HV-06 16 19278342 19278342 C T SYT17 Silent p.L457L 0.14 TCGA-DA-A1HV-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.53 deleterious(0.03) benign(0.001) TCGA-DA-A1HV-06 16 19471648 19471648 G A TMC5 Silent p.R380R 0.32 TCGA-DA-A1HV-06 16 19648960 19648960 C T C16orf62 Silent p.F649F 0.31 TCGA-DA-A1HV-06 16 19883577 19883577 G A GPRC5B Silent p.P197P 0.42 TCGA-DA-A1HV-06 16 20359594 20359594 C T UMOD Silent p.S308S 0.24 TCGA-DA-A1HV-06 16 20482538 20482538 G A ACSM2A Missense_Mutation p.G247D 0.45 tolerated(0.16) benign(0.045) TCGA-DA-A1HV-06 16 20638539 20638539 T G ACSM1 Silent p.R467R 0.47 TCGA-DA-A1HV-06 16 20638540 20638540 C T ACSM1 Silent p.G466G 0.48 TCGA-DA-A1HV-06 16 20970706 20970706 C T DNAH3 Missense_Mutation p.D3541N 0.22 deleterious(0) probably_damaging(0.98) TCGA-DA-A1HV-06 16 23722238 23722238 C T ERN2 Silent p.R113R 0.24 TCGA-DA-A1HV-06 16 24043504 24043504 C T PRKCB Silent p.P112P 0.17 TCGA-DA-A1HV-06 16 25251409 25251409 G A ZKSCAN2 Missense_Mutation p.R878W 0.40 tolerated(0.14) probably_damaging(0.961) TCGA-DA-A1HV-06 16 27460566 27460566 C T IL21R Missense_Mutation p.P527S 0.50 tolerated(0.68) benign(0.003) TCGA-DA-A1HV-06 16 28331720 28331720 C T SBK1 Silent p.F251F 0.20 TCGA-DA-A1HV-06 16 28507730 28507730 G A APOBR Silent p.G456G 0.47 TCGA-DA-A1HV-06 16 30507601 30507601 C T ITGAL Missense_Mutation p.P563S 0.51 tolerated(0.32) benign(0.009) TCGA-DA-A1HV-06 16 30536451 30536451 C T ZNF768 Missense_Mutation p.R337H 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A1HV-06 16 30536502 30536502 G A ZNF768 Missense_Mutation p.P320L 0.61 tolerated_low_confidence(0.16) probably_damaging(0.989) TCGA-DA-A1HV-06 16 30581590 30581590 C G ZNF688 Missense_Mutation p.D160H 0.45 deleterious(0.05) possibly_damaging(0.621) TCGA-DA-A1HV-06 16 30910772 30910772 C T CTF1 Missense_Mutation p.P21L 0.52 deleterious(0.01) possibly_damaging(0.577) TCGA-DA-A1HV-06 16 3107594 3107594 G A MMP25 Missense_Mutation p.G329E 0.38 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 16 31391661 31391661 C T ITGAX Silent p.F1045F 0.33 TCGA-DA-A1HV-06 16 31539942 31539942 C T AHSP Missense_Mutation p.P80L 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1HV-06 16 32077447 32077447 C T IGHV3OR16-9 Missense_Mutation p.S21F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-DA-A1HV-06 16 3820669 3820669 G A CREBBP Missense_Mutation p.P928S 0.53 unknown(0) TCGA-DA-A1HV-06 16 4390309 4390309 G A CORO7-PAM16 3'UTR 0.25 TCGA-DA-A1HV-06 16 48231937 48231937 C T ABCC11 Silent p.K753K 0.44 TCGA-DA-A1HV-06 16 49670581 49670581 C T ZNF423 Missense_Mutation p.E828K 0.44 tolerated(0.14) benign(0.224) TCGA-DA-A1HV-06 16 49671455 49671455 G A ZNF423 Silent p.I536I 0.47 TCGA-DA-A1HV-06 16 51174110 51174110 G A SALL1 Missense_Mutation p.P675S 0.41 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 16 51175859 51175859 C T SALL1 Missense_Mutation p.D92N 0.38 tolerated(0.41) benign(0.001) TCGA-DA-A1HV-06 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.25 deleterious(0) probably_damaging(0.979) TCGA-DA-A1HV-06 16 57945663 57945663 C T CNGB1 Missense_Mutation p.G829E 0.48 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 16 57992359 57992359 C T CNGB1 Silent p.E264E 0.34 TCGA-DA-A1HV-06 16 66436749 66436749 C T CDH5 Silent p.L678L 0.50 TCGA-DA-A1HV-06 16 67221029 67221029 C T EXOC3L1 Missense_Mutation p.M351I 0.14 deleterious(0.05) possibly_damaging(0.627) TCGA-DA-A1HV-06 16 67912701 67912701 C T EDC4 Missense_Mutation p.L416F 0.25 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 16 70219787 70219787 G A CLEC18C Splice_Site p.X404_splice 0.39 TCGA-DA-A1HV-06 16 70500891 70500891 C T FUK Intron 0.29 TCGA-DA-A1HV-06 16 71127790 71127790 G A HYDIN Missense_Mutation p.P459L 0.57 probably_damaging(0.997) TCGA-DA-A1HV-06 16 72120541 72120541 T C TXNL4B Missense_Mutation p.I149V 0.22 tolerated(0.54) benign(0.016) TCGA-DA-A1HV-06 16 72828864 72828864 G A ZFHX3 Missense_Mutation p.P2573S 0.23 unknown(0) TCGA-DA-A1HV-06 16 7382946 7382946 C T RBFOX1 5'UTR 0.48 TCGA-DA-A1HV-06 16 74443540 74443540 C T CLEC18B Splice_Site p.X413_splice 0.10 TCGA-DA-A1HV-06 16 76573629 76573629 C T CNTNAP4 Silent p.I1005I 0.44 TCGA-DA-A1HV-06 16 7703829 7703829 C T RBFOX1 Missense_Mutation p.P277L 0.36 deleterious(0.01) benign(0.013) TCGA-DA-A1HV-06 16 77334242 77334242 C T ADAMTS18 Missense_Mutation p.M864I 0.33 tolerated(0.22) benign(0) TCGA-DA-A1HV-06 16 77359786 77359786 C T ADAMTS18 Nonsense_Mutation p.W670* 0.33 TCGA-DA-A1HV-06 16 7760624 7760624 G A RBFOX1 Splice_Site p.X379_splice 0.36 TCGA-DA-A1HV-06 16 77896765 77896765 G A VAT1L Missense_Mutation p.D234N 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HV-06 16 77918577 77918577 T C VAT1L Silent p.L319L 0.52 TCGA-DA-A1HV-06 16 78064434 78064434 C A CLEC3A Missense_Mutation p.S106Y 0.47 deleterious(0) possibly_damaging(0.891) TCGA-DA-A1HV-06 16 80654830 80654830 G A CDYL2 Silent p.I279I 0.44 TCGA-DA-A1HV-06 16 81145855 81145855 C T PKD1L2 RNA 0.42 TCGA-DA-A1HV-06 16 81324033 81324033 G A BCMO1 Missense_Mutation p.E499K 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 16 81925159 81925159 C T PLCG2 Missense_Mutation p.P317L 0.55 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HV-06 16 82132093 82132093 G A HSD17B2 3'UTR 0.22 TCGA-DA-A1HV-06 16 83378478 83378478 G A CDH13 Silent p.E263E 0.43 TCGA-DA-A1HV-06 16 84065481 84065481 G A SLC38A8 Missense_Mutation p.P208L 0.10 tolerated(0.66) benign(0.004) TCGA-DA-A1HV-06 16 84474517 84474517 G A ATP2C2 Missense_Mutation p.E422K 0.17 tolerated(0.16) benign(0.118) TCGA-DA-A1HV-06 16 86602418 86602418 C T FOXC2 Missense_Mutation p.P493S 0.41 tolerated(0.14) probably_damaging(0.967) TCGA-DA-A1HV-06 16 87445384 87445384 G A ZCCHC14 Silent p.G844G 0.61 TCGA-DA-A1HV-06 16 8858602 8858602 C T ABAT Missense_Mutation p.P152L 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 16 89715875 89715875 G A CHMP1A Missense_Mutation p.R46C 0.27 deleterious(0) probably_damaging(0.97) TCGA-DA-A1HV-06 16 9857170 9857170 A C GRIN2A Missense_Mutation p.Y1411D 0.57 deleterious(0.01) possibly_damaging(0.713) TCGA-DA-A1HV-06 17 10235437 10235437 C T MYH13 Silent p.Q759Q 0.57 TCGA-DA-A1HV-06 17 10315965 10315965 C T MYH8 Missense_Mutation p.G410S 0.60 deleterious(0) possibly_damaging(0.84) TCGA-DA-A1HV-06 17 10427974 10427974 G A MYH2 Missense_Mutation p.H1662Y 0.54 deleterious(0.01) benign(0.064) TCGA-DA-A1HV-06 17 10446465 10446465 C T MYH2 Missense_Mutation p.R252K 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-DA-A1HV-06 17 10596221 10596221 G A SCO1 Missense_Mutation p.S141F 0.78 deleterious(0.03) benign(0.265) TCGA-DA-A1HV-06 17 11833300 11833300 G A DNAH9 Missense_Mutation p.E3999K 0.72 benign(0.371) TCGA-DA-A1HV-06 17 1340235 1340235 G C CRK Silent p.P152P 0.25 TCGA-DA-A1HV-06 17 15878080 15878080 C A ADORA2B Missense_Mutation p.F141L 0.65 tolerated(0.18) benign(0.06) TCGA-DA-A1HV-06 17 15983350 15983350 A G NCOR1 Silent p.S1143S 0.61 TCGA-DA-A1HV-06 17 1636905 1636905 G A WDR81 Missense_Mutation p.S1525N 0.55 tolerated(0.25) benign(0.005) TCGA-DA-A1HV-06 17 16455369 16455369 C T ZNF287 Missense_Mutation p.R696K 0.65 tolerated(0.21) probably_damaging(0.921) TCGA-DA-A1HV-06 17 16703556 16703556 G A CCDC144A 3'UTR 0.56 TCGA-DA-A1HV-06 17 16852154 16852154 G A TNFRSF13B Missense_Mutation p.P115S 0.65 tolerated(0.43) benign(0.104) TCGA-DA-A1HV-06 17 18675803 18675803 G A FBXW10 Silent p.T695T 0.64 TCGA-DA-A1HV-06 17 20355177 20355177 G A LGALS9B Missense_Mutation p.T230I 0.28 tolerated(0.34) benign(0.005) TCGA-DA-A1HV-06 17 26817413 26817413 G A SLC13A2 Missense_Mutation p.G107E 0.58 tolerated_low_confidence(0.29) benign(0.006) TCGA-DA-A1HV-06 17 26887112 26887112 G A PIGS Silent p.F258F 0.50 TCGA-DA-A1HV-06 17 27064839 27064839 A T NEK8 Missense_Mutation p.I298F 0.54 tolerated(0.14) benign(0.01) TCGA-DA-A1HV-06 17 33289302 33289302 A T ZNF830 Missense_Mutation p.R239S 0.47 deleterious(0.01) possibly_damaging(0.527) TCGA-DA-A1HV-06 17 33479972 33479972 G A UNC45B Missense_Mutation p.E148K 0.70 tolerated(0.48) benign(0.001) TCGA-DA-A1HV-06 17 33749255 33749255 C T SLFN12 Missense_Mutation p.E265K 0.53 tolerated(0.33) benign(0.043) TCGA-DA-A1HV-06 17 34863697 34863697 T C MYO19 Missense_Mutation p.Y433C 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 17 35536296 35536296 G A ACACA Missense_Mutation p.P1662S 0.32 tolerated(0.73) benign(0) TCGA-DA-A1HV-06 17 35615257 35615257 G A ACACA Silent p.I513I 0.74 TCGA-DA-A1HV-06 17 38063221 38063221 G A GSDMB Silent p.S240S 0.35 TCGA-DA-A1HV-06 17 38420841 38420841 C T WIPF2 Missense_Mutation p.T138I 0.27 tolerated(0.06) benign(0.157) TCGA-DA-A1HV-06 17 39017914 39017914 T C KRT12 Silent p.%3D 0.86 TCGA-DA-A1HV-06 17 39150178 39150178 G A KRTAP3-3 Missense_Mutation p.P58S 0.79 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A1HV-06 17 39552713 39552713 G A KRT31 Silent p.L183L 0.79 TCGA-DA-A1HV-06 17 39580247 39580247 C T KRT37 Intron 0.74 TCGA-DA-A1HV-06 17 39768825 39768825 G A KRT16 Missense_Mutation p.S39F 0.81 deleterious(0) unknown(0) TCGA-DA-A1HV-06 17 40312181 40312181 G A KCNH4 Silent p.S977S 0.82 TCGA-DA-A1HV-06 17 41719337 41719337 A T MEOX1 Missense_Mutation p.S236T 0.39 deleterious(0.01) benign(0.245) TCGA-DA-A1HV-06 17 42397640 42397640 G A SLC25A39 Silent p.N296N 0.85 TCGA-DA-A1HV-06 17 42847128 42847128 A C ADAM11 Missense_Mutation p.N94H 0.43 deleterious(0.01) benign(0.014) TCGA-DA-A1HV-06 17 45479563 45479563 T C EFCAB13 Silent p.L671L 0.81 TCGA-DA-A1HV-06 17 45925172 45925172 C T SP6 Silent p.G208G 0.46 TCGA-DA-A1HV-06 17 4725982 4725982 C T PLD2 Silent p.L875L 0.61 TCGA-DA-A1HV-06 17 48222486 48222486 A T PPP1R9B Missense_Mutation p.L497Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 17 5212104 5212104 T C RABEP1 Silent p.Y50Y 0.66 TCGA-DA-A1HV-06 17 54526526 54526526 C T ANKFN1 Missense_Mutation p.H399Y 0.76 deleterious(0.02) possibly_damaging(0.622) TCGA-DA-A1HV-06 17 54912461 54912461 C T DGKE Missense_Mutation p.A102V 0.82 deleterious(0.03) benign(0.032) TCGA-DA-A1HV-06 17 57758286 57758286 C T CLTC Missense_Mutation p.A978V 0.72 deleterious(0) possibly_damaging(0.743) TCGA-DA-A1HV-06 17 58511075 58511075 C T C17orf64 3'Flank 0.92 TCGA-DA-A1HV-06 17 61499168 61499168 C T TANC2 Missense_Mutation p.S1942F 0.54 deleterious_low_confidence(0) benign(0.34) TCGA-DA-A1HV-06 17 61949457 61949457 G C CSH2 3'UTR 0.82 TCGA-DA-A1HV-06 17 6531816 6531816 A G KIAA0753 Silent p.F113F 0.58 TCGA-DA-A1HV-06 17 67075408 67075408 T G ABCA6 Splice_Site p.X1566_splice 0.24 TCGA-DA-A1HV-06 17 6982167 6982167 G A CLEC10A 5'UTR 0.65 TCGA-DA-A1HV-06 17 72363681 72363681 C T GPR142 Nonsense_Mutation p.Q13* 0.78 TCGA-DA-A1HV-06 17 7258682 7258682 C T TMEM95 Silent p.A53A 0.50 TCGA-DA-A1HV-06 17 72613347 72613347 C T CD300E Missense_Mutation p.G100R 0.69 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 17 72875551 72875551 C T FADS6 Missense_Mutation p.D297N 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HV-06 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.68 deleterious(0.04) possibly_damaging(0.83) TCGA-DA-A1HV-06 17 76497833 76497833 G A DNAH17 Silent p.I1760I 0.81 TCGA-DA-A1HV-06 17 7657781 7657781 C T DNAH2 Intron 0.73 TCGA-DA-A1HV-06 17 7680857 7680857 C T DNAH2 Missense_Mutation p.H1718Y 0.62 probably_damaging(0.999) TCGA-DA-A1HV-06 17 77073900 77073900 C T ENGASE Missense_Mutation p.R124W 0.72 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 17 7750516 7750516 C T KDM6B Missense_Mutation p.P335S 0.65 unknown(0) TCGA-DA-A1HV-06 17 78222958 78222958 C T SLC26A11 Missense_Mutation p.P510S 0.67 tolerated(0.21) benign(0.023) TCGA-DA-A1HV-06 17 78972191 78972191 C T CHMP6 Missense_Mutation p.P174L 0.76 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 17 7916452 7916452 G A GUCY2D Silent p.R715R 0.78 TCGA-DA-A1HV-06 17 79913410 79913410 G A NOTUM Silent p.F333F 0.80 TCGA-DA-A1HV-06 17 80790281 80790281 C T ZNF750 Missense_Mutation p.R17K 0.29 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HV-06 17 9546490 9546490 G A WDR16 Missense_Mutation p.R613Q 0.54 tolerated(0.3) benign(0.103) TCGA-DA-A1HV-06 17 9615323 9615323 C T USP43 Missense_Mutation p.R737W 0.68 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HV-06 17 9631771 9631771 C T USP43 Nonsense_Mutation p.R946* 0.45 TCGA-DA-A1HV-06 17 9680597 9680597 G A DHRS7C Missense_Mutation p.L163F 0.78 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HV-06 18 19995673 19995673 G A CTAGE1 Missense_Mutation p.P701L 0.37 tolerated(0.07) benign(0.003) TCGA-DA-A1HV-06 18 2700607 2700607 T C SMCHD1 Silent p.I471I 0.35 TCGA-DA-A1HV-06 18 28667695 28667695 C T DSC2 Missense_Mutation p.D238N 0.27 deleterious(0.04) probably_damaging(1) TCGA-DA-A1HV-06 18 28737418 28737418 C T DSC1 Silent p.R89R 0.28 TCGA-DA-A1HV-06 18 28934380 28934380 G A DSG1 Missense_Mutation p.E741K 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1HV-06 18 29052712 29052712 C T DSG3 Missense_Mutation p.P688S 0.44 tolerated(0.43) benign(0.005) TCGA-DA-A1HV-06 18 29126020 29126020 C T DSG2 Missense_Mutation p.P891S 0.34 tolerated(0.24) benign(0.038) TCGA-DA-A1HV-06 18 31538223 31538223 C T NOL4 Missense_Mutation p.E406K 0.35 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 18 33269215 33269215 G A GALNT1 Missense_Mutation p.M313I 0.38 deleterious(0) probably_damaging(0.925) TCGA-DA-A1HV-06 18 3729341 3729341 G A DLGAP1 Missense_Mutation p.S462F 0.48 deleterious(0) possibly_damaging(0.646) TCGA-DA-A1HV-06 18 39535207 39535207 T A PIK3C3 5'UTR 0.33 TCGA-DA-A1HV-06 18 42281456 42281456 C T SETBP1 Missense_Mutation p.P49S 0.28 tolerated_low_confidence(0.18) benign(0.005) TCGA-DA-A1HV-06 18 42531100 42531100 G A SETBP1 Missense_Mutation p.E599K 0.22 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HV-06 18 44584636 44584636 C T KATNAL2 Silent p.P49P 0.24 TCGA-DA-A1HV-06 18 46956685 46956685 G A DYM Missense_Mutation p.S27F 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1HV-06 18 47769351 47769351 C T CCDC11 Missense_Mutation p.E378K 0.31 tolerated(0.22) benign(0.124) TCGA-DA-A1HV-06 18 50936947 50936947 C T DCC Nonsense_Mutation p.R1021* 0.16 TCGA-DA-A1HV-06 18 51053037 51053037 G A DCC Missense_Mutation p.G1388R 0.27 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 18 52262277 52262277 G A DYNAP Silent p.V81V 0.30 TCGA-DA-A1HV-06 18 52265336 52265336 C T DYNAP Missense_Mutation p.S198F 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1HV-06 18 52899845 52899845 G A TCF4 Missense_Mutation p.S617F 0.26 deleterious(0.01) possibly_damaging(0.714) TCGA-DA-A1HV-06 18 53070731 53070731 G A TCF4 Missense_Mutation p.S210L 0.26 tolerated(0.21) benign(0.052) TCGA-DA-A1HV-06 18 54385259 54385259 G A WDR7 Missense_Mutation p.R548Q 0.41 tolerated(0.17) probably_damaging(0.943) TCGA-DA-A1HV-06 18 55021697 55021697 G A ST8SIA3 Missense_Mutation p.E82K 0.40 benign(0.016) TCGA-DA-A1HV-06 18 56892918 56892918 G A GRP Missense_Mutation p.D112N 0.26 tolerated(0.09) benign(0.059) TCGA-DA-A1HV-06 18 58038642 58038642 T C MC4R Missense_Mutation p.K314R 0.20 tolerated(0.28) probably_damaging(0.98) TCGA-DA-A1HV-06 18 60795907 60795907 G A BCL2 Missense_Mutation p.A224V 0.50 tolerated(0.28) benign(0.025) TCGA-DA-A1HV-06 18 61006117 61006117 C T KDSR Splice_Site p.X232_splice 0.32 TCGA-DA-A1HV-06 18 61304876 61304876 C T SERPINB4 3'UTR 0.33 TCGA-DA-A1HV-06 18 67266698 67266698 C T DOK6 Missense_Mutation p.H85Y 0.25 tolerated(0.37) benign(0.106) TCGA-DA-A1HV-06 18 67345046 67345046 G A DOK6 Silent p.G122G 0.35 TCGA-DA-A1HV-06 18 70417346 70417346 C T NETO1 Missense_Mutation p.V498M 0.36 tolerated_low_confidence(0.09) possibly_damaging(0.853) TCGA-DA-A1HV-06 18 76754335 76754335 G A SALL3 Missense_Mutation p.E782K 0.45 deleterious(0) possibly_damaging(0.449) TCGA-DA-A1HV-06 18 77623910 77623910 C T KCNG2 Silent p.I81I 0.30 TCGA-DA-A1HV-06 18 8784642 8784642 T A SOGA2 Missense_Mutation p.L511Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 19 10404813 10404813 G A ICAM5 Silent p.Q603Q 0.65 TCGA-DA-A1HV-06 19 10692467 10692467 C T AP1M2 Missense_Mutation p.D119N 0.68 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 19 11231068 11231068 C T LDLR Silent p.T670T 0.67 TCGA-DA-A1HV-06 19 12501354 12501354 G A ZNF799 Missense_Mutation p.P620S 0.62 tolerated(0.07) benign(0) TCGA-DA-A1HV-06 19 13007225 13007225 C T GCDH Missense_Mutation p.S281F 0.77 deleterious_low_confidence(0.02) benign(0.001) TCGA-DA-A1HV-06 19 13007226 13007226 C T GCDH Silent p.S281S 0.75 TCGA-DA-A1HV-06 19 13873709 13873709 A G CCDC130 Missense_Mutation p.T340A 0.70 tolerated(0.34) benign(0.006) TCGA-DA-A1HV-06 19 14710954 14710954 A T CLEC17A Missense_Mutation p.N285I 0.60 deleterious(0.03) probably_damaging(0.971) TCGA-DA-A1HV-06 19 14730164 14730164 C T EMR3 3'UTR 0.64 TCGA-DA-A1HV-06 19 15065069 15065069 G A SLC1A6 Silent p.F414F 0.59 TCGA-DA-A1HV-06 19 15302774 15302774 G A NOTCH3 Missense_Mutation p.P226S 0.64 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A1HV-06 19 15512027 15512027 G A AKAP8L Silent p.F250F 0.57 TCGA-DA-A1HV-06 19 15726592 15726592 G A AD000091.2 5'Flank 0.63 TCGA-DA-A1HV-06 19 15917920 15917920 G C OR10H1 Missense_Mutation p.L310V 0.74 tolerated(0.15) benign(0.011) TCGA-DA-A1HV-06 19 16006401 16006401 C T CYP4F2 Silent p.Q86Q 0.58 TCGA-DA-A1HV-06 19 16060709 16060709 G A OR10H4 Missense_Mutation p.E298K 0.67 deleterious(0) benign(0.047) TCGA-DA-A1HV-06 19 16259546 16259546 C T HSH2D Intron 0.50 TCGA-DA-A1HV-06 19 16259547 16259547 C T HSH2D Intron 0.49 TCGA-DA-A1HV-06 19 17918754 17918754 C T B3GNT3 Silent p.A46A 0.67 TCGA-DA-A1HV-06 19 17942554 17942554 C T JAK3 Missense_Mutation p.D912N 0.63 deleterious(0.01) possibly_damaging(0.53) TCGA-DA-A1HV-06 19 19049244 19049244 G A HOMER3 Missense_Mutation p.S74F 0.55 deleterious(0.04) probably_damaging(0.926) TCGA-DA-A1HV-06 19 19312956 19312956 G A NR2C2AP Intron 0.55 TCGA-DA-A1HV-06 19 19338113 19338113 C T NCAN Missense_Mutation p.P562S 0.62 tolerated(0.12) benign(0.36) TCGA-DA-A1HV-06 19 19655896 19655896 G A CILP2 Missense_Mutation p.D848N 0.75 tolerated(0.06) probably_damaging(1) TCGA-DA-A1HV-06 19 20117929 20117929 C T ZNF682 Missense_Mutation p.E128K 0.65 tolerated(0.58) benign(0) TCGA-DA-A1HV-06 19 20808123 20808123 G A ZNF626 Missense_Mutation p.T187I 0.67 tolerated(0.32) probably_damaging(0.998) TCGA-DA-A1HV-06 19 20975441 20975441 C T ZNF66 Missense_Mutation p.L43F 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1HV-06 19 2213802 2213802 C T DOT1L Intron 0.50 TCGA-DA-A1HV-06 19 22154256 22154256 C T ZNF208 Missense_Mutation p.E1194K 0.67 tolerated(0.08) benign(0.253) TCGA-DA-A1HV-06 19 22193595 22193595 A C ZNF208 Translation_Start_Site p.M1? 0.60 tolerated(0.08) benign(0.021) TCGA-DA-A1HV-06 19 22271407 22271407 C T ZNF257 Silent p.F285F 0.67 TCGA-DA-A1HV-06 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.42 deleterious(0.03) probably_damaging(0.964) TCGA-DA-A1HV-06 19 22586228 22586228 C A ZNF98 Missense_Mutation p.R39S 0.76 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1HV-06 19 22939443 22939443 G A ZNF99 3'Flank 0.71 TCGA-DA-A1HV-06 19 22940058 22940058 G A ZNF99 3'Flank 0.40 TCGA-DA-A1HV-06 19 31769651 31769651 C T TSHZ3 Missense_Mutation p.D350N 0.59 tolerated(0.18) benign(0.298) TCGA-DA-A1HV-06 19 33417176 33417176 C T CEP89 Missense_Mutation p.D362N 0.56 deleterious(0.03) possibly_damaging(0.48) TCGA-DA-A1HV-06 19 33417177 33417177 C T CEP89 Silent p.L361L 0.56 TCGA-DA-A1HV-06 19 35849867 35849867 C T FFAR3 Silent p.F25F 0.27 TCGA-DA-A1HV-06 19 36342518 36342518 C T NPHS1 Missense_Mutation p.E39K 0.58 tolerated(0.07) benign(0.026) TCGA-DA-A1HV-06 19 36496269 36496269 C T SYNE4 Missense_Mutation p.R313H 0.64 deleterious(0) benign(0.019) TCGA-DA-A1HV-06 19 38572211 38572211 C A SIPA1L3 Silent p.T2T 0.09 TCGA-DA-A1HV-06 19 39025368 39025368 G A RYR1 Silent p.Q3756Q 0.47 TCGA-DA-A1HV-06 19 4222739 4222739 C T ANKRD24 Missense_Mutation p.P1082S 0.62 tolerated(0.32) benign(0.031) TCGA-DA-A1HV-06 19 43257372 43257372 C T PSG8 3'Flank 0.67 TCGA-DA-A1HV-06 19 43268068 43268068 G A PSG8 Silent p.L144L 0.66 TCGA-DA-A1HV-06 19 43371394 43371394 C T PSG1 3'UTR 0.88 TCGA-DA-A1HV-06 19 43414834 43414834 A G PSG6 Missense_Mutation p.Y202H 0.57 tolerated(0.28) benign(0.393) TCGA-DA-A1HV-06 19 44936434 44936434 G A ZNF229 Silent p.F67F 0.59 TCGA-DA-A1HV-06 19 45211155 45211155 C T CEACAM16 Silent p.I321I 0.59 TCGA-DA-A1HV-06 19 45322847 45322847 C T BCAM Nonsense_Mutation p.Q543* 0.61 TCGA-DA-A1HV-06 19 46195232 46195232 G A SNRPD2 5'UTR 0.58 TCGA-DA-A1HV-06 19 46289477 46289477 G A DMWD Missense_Mutation p.S426F 0.67 tolerated(0.1) possibly_damaging(0.685) TCGA-DA-A1HV-06 19 46832507 46832507 C T HIF3A Missense_Mutation p.S495F 0.74 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1HV-06 19 48908344 48908344 C T GRIN2D Silent p.F273F 0.62 TCGA-DA-A1HV-06 19 4902817 4902817 G A ARRDC5 Silent p.I21I 0.63 TCGA-DA-A1HV-06 19 49548498 49548498 C T CGB5 Missense_Mutation p.P149S 0.33 tolerated_low_confidence(0.18) benign(0.262) TCGA-DA-A1HV-06 19 49552067 49552067 G A CGB8 5'UTR 0.61 TCGA-DA-A1HV-06 19 50882435 50882435 C T NR1H2 Silent p.I308I 0.60 TCGA-DA-A1HV-06 19 51628589 51628589 C T SIGLEC9 Missense_Mutation p.R120C 0.71 deleterious(0) possibly_damaging(0.838) TCGA-DA-A1HV-06 19 51728536 51728536 G A CD33 Missense_Mutation p.G34S 0.67 deleterious(0.04) probably_damaging(0.996) TCGA-DA-A1HV-06 19 51955837 51955837 G A SIGLEC8 Silent p.P432P 0.66 TCGA-DA-A1HV-06 19 51958838 51958838 C T SIGLEC8 Nonsense_Mutation p.W295* 0.69 TCGA-DA-A1HV-06 19 52249761 52249761 G A FPR1 Missense_Mutation p.R163C 0.63 deleterious(0.02) possibly_damaging(0.773) TCGA-DA-A1HV-06 19 53303922 53303922 G A ZNF28 Silent p.F392F 0.57 TCGA-DA-A1HV-06 19 53911743 53911743 C T ZNF765 Missense_Mutation p.S312L 0.67 deleterious(0) probably_damaging(0.979) TCGA-DA-A1HV-06 19 54313804 54313804 C T NLRP12 Missense_Mutation p.R370K 0.61 tolerated(0.06) benign(0.37) TCGA-DA-A1HV-06 19 54395855 54395855 C T PRKCG Missense_Mutation p.S260F 0.53 deleterious(0.03) probably_damaging(0.995) TCGA-DA-A1HV-06 19 54445560 54445560 G A CACNG7 3'UTR 0.57 TCGA-DA-A1HV-06 19 54754699 54754699 C T LILRB5 Missense_Mutation p.R576K 0.73 tolerated(0.09) benign(0.253) TCGA-DA-A1HV-06 19 54760607 54760607 C T LILRB5 Missense_Mutation p.E34K 0.54 deleterious(0.03) possibly_damaging(0.864) TCGA-DA-A1HV-06 19 54784381 54784381 G A LILRB2 5'UTR 0.71 TCGA-DA-A1HV-06 19 55106176 55106176 C T LILRA1 Silent p.I39I 0.62 TCGA-DA-A1HV-06 19 55143946 55143946 G A LILRB1 Silent p.Q231Q 0.68 TCGA-DA-A1HV-06 19 55493564 55493564 G A NLRP2 Silent p.T166T 0.70 TCGA-DA-A1HV-06 19 55670924 55670924 C T DNAAF3 Silent p.G472G 0.58 TCGA-DA-A1HV-06 19 55693237 55693237 C T PTPRH Missense_Mutation p.R1078Q 0.55 benign(0.256) TCGA-DA-A1HV-06 19 55716733 55716733 C T PTPRH Missense_Mutation p.G194R 0.52 unknown(0) TCGA-DA-A1HV-06 19 56243801 56243801 G A NLRP9 Missense_Mutation p.P466S 0.65 tolerated(0.15) benign(0.232) TCGA-DA-A1HV-06 19 56388459 56388459 G A NLRP4 Missense_Mutation p.E875K 0.58 tolerated(1) benign(0.017) TCGA-DA-A1HV-06 19 56410206 56410206 C T NLRP13 Missense_Mutation p.D963N 0.71 tolerated(0.19) possibly_damaging(0.486) TCGA-DA-A1HV-06 19 56423089 56423089 C T NLRP13 Silent p.R698R 0.63 TCGA-DA-A1HV-06 19 56466901 56466901 C T NLRP8 Missense_Mutation p.L493F 0.64 tolerated(0.25) benign(0.029) TCGA-DA-A1HV-06 19 56895360 56895360 C T ZNF582 Missense_Mutation p.E476K 0.63 deleterious(0.02) benign(0.003) TCGA-DA-A1HV-06 19 5733907 5733907 C T CATSPERD Missense_Mutation p.S106L 0.72 tolerated(0.06) benign(0.059) TCGA-DA-A1HV-06 19 57802418 57802418 C T ZNF460 Missense_Mutation p.S170F 0.73 tolerated(0.71) benign(0.269) TCGA-DA-A1HV-06 19 5843768 5843768 G A FUT3 Silent p.T361T 0.62 TCGA-DA-A1HV-06 19 651691 651691 C T RNF126 Silent p.R121R 0.75 TCGA-DA-A1HV-06 19 6707832 6707832 G A C3 Nonsense_Mutation p.Q652* 0.58 TCGA-DA-A1HV-06 19 7676920 7676920 C T CAMSAP3 Missense_Mutation p.T541I 0.52 tolerated(0.14) benign(0.162) TCGA-DA-A1HV-06 19 7912683 7912683 C T EVI5L Missense_Mutation p.S68L 0.47 deleterious(0.04) benign(0.062) TCGA-DA-A1HV-06 19 8564197 8564197 C T PRAM1 Silent p.R165R 0.59 TCGA-DA-A1HV-06 19 8564198 8564198 C T PRAM1 Missense_Mutation p.R165Q 0.59 tolerated(1) benign(0.003) TCGA-DA-A1HV-06 19 8670023 8670023 G A ADAMTS10 Silent p.S103S 0.71 TCGA-DA-A1HV-06 19 8996474 8996474 C T MUC16 Missense_Mutation p.A13700T 0.48 probably_damaging(0.925) TCGA-DA-A1HV-06 19 8997440 8997440 T G MUC16 Missense_Mutation p.N13661T 0.83 probably_damaging(0.998) TCGA-DA-A1HV-06 19 9066603 9066603 G A MUC16 Missense_Mutation p.S6948F 0.62 unknown(0) TCGA-DA-A1HV-06 19 9067326 9067326 G A MUC16 Missense_Mutation p.S6707F 0.59 unknown(0) TCGA-DA-A1HV-06 19 9070778 9070778 G A MUC16 Silent p.I5556I 0.62 TCGA-DA-A1HV-06 19 9087904 9087904 G A MUC16 Missense_Mutation p.S1304L 0.59 unknown(0) TCGA-DA-A1HV-06 19 9226274 9226274 G A OR7G1 Missense_Mutation p.H56Y 0.67 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A1HV-06 19 9296535 9296535 C T OR7D2 Silent p.F26F 0.76 TCGA-DA-A1HV-06 19 9577230 9577230 C T ZNF560 3'UTR 0.67 TCGA-DA-A1HV-06 1 103481270 103481270 C T COL11A1 Missense_Mutation p.G481E 0.25 probably_damaging(1) TCGA-DA-A1HV-06 1 10479548 10479548 C T PGD Silent p.S428S 0.46 TCGA-DA-A1HV-06 1 108292186 108292186 G A VAV3 Silent p.I430I 0.23 TCGA-DA-A1HV-06 1 11017713 11017713 G A C1orf127 Missense_Mutation p.T218I 0.15 deleterious(0) benign(0.071) TCGA-DA-A1HV-06 1 110256043 110256043 G A GSTM5 Intron 0.42 TCGA-DA-A1HV-06 1 110655146 110655146 C T UBL4B 5'UTR 0.26 TCGA-DA-A1HV-06 1 11199665 11199665 G A MTOR Silent p.S1641S 0.40 TCGA-DA-A1HV-06 1 11199666 11199666 G A MTOR Missense_Mutation p.S1641F 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 1 11264758 11264758 G A MTOR Silent p.A1268A 0.24 TCGA-DA-A1HV-06 1 11273516 11273516 G A MTOR Silent p.I1075I 0.54 TCGA-DA-A1HV-06 1 11346060 11346060 G A UBIAD1 Missense_Mutation p.E297K 0.21 deleterious(0) probably_damaging(0.968) TCGA-DA-A1HV-06 1 115130440 115130440 G A DENND2C Silent p.S855S 0.45 TCGA-DA-A1HV-06 1 115218250 115218250 C T AMPD1 Missense_Mutation p.S560N 0.57 tolerated(0.09) probably_damaging(0.999) TCGA-DA-A1HV-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.48 deleterious(0.01) benign(0.045) TCGA-DA-A1HV-06 1 11591051 11591051 G A PTCHD2 Missense_Mutation p.E1064K 0.50 tolerated(0.27) benign(0.003) TCGA-DA-A1HV-06 1 116670178 116670178 G A MAB21L3 Silent p.V191V 0.55 TCGA-DA-A1HV-06 1 117560035 117560035 C T CD101 Missense_Mutation p.R518W 0.48 tolerated(0.07) benign(0.005) TCGA-DA-A1HV-06 1 117753492 117753492 C T VTCN1 5'UTR 0.46 TCGA-DA-A1HV-06 1 118165518 118165518 G A FAM46C Missense_Mutation p.D10N 0.54 tolerated(0.36) benign(0.01) TCGA-DA-A1HV-06 1 118454616 118454616 G A GDAP2 Missense_Mutation p.R187C 0.26 deleterious(0) probably_damaging(0.915) TCGA-DA-A1HV-06 1 118506531 118506531 C T SPAG17 Missense_Mutation p.R2188Q 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 1 119965009 119965009 C T HSD3B2 Silent p.F295F 0.19 TCGA-DA-A1HV-06 1 120345386 120345386 C T REG4 Intron 0.45 TCGA-DA-A1HV-06 1 120351463 120351463 C T REG4 5'UTR 0.20 TCGA-DA-A1HV-06 1 12316509 12316509 C T VPS13D Silent p.P263P 0.40 TCGA-DA-A1HV-06 1 12835203 12835203 C T PRAMEF12 Missense_Mutation p.P65S 0.60 deleterious(0) probably_damaging(0.986) TCGA-DA-A1HV-06 1 12907949 12907949 G A HNRNPCL1 Missense_Mutation p.A65V 0.19 deleterious(0.02) benign(0.439) TCGA-DA-A1HV-06 1 12979744 12979744 C T PRAMEF7 Silent p.L312L 0.11 TCGA-DA-A1HV-06 1 13036637 13036637 C T PRAMEF22 Missense_Mutation p.R237C 0.20 deleterious(0.01) benign(0.013) TCGA-DA-A1HV-06 1 1391200 1391200 C T ATAD3C Silent p.I156I 0.20 TCGA-DA-A1HV-06 1 145109575 145109575 C T SEC22B RNA 0.06 TCGA-DA-A1HV-06 1 147380438 147380438 G A GJA8 Missense_Mutation p.G119E 0.29 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 1 150960769 150960769 C T ANXA9 Silent p.I268I 0.47 TCGA-DA-A1HV-06 1 152058282 152058282 C T TCHHL1 Missense_Mutation p.E626K 0.44 tolerated(0.08) benign(0.147) TCGA-DA-A1HV-06 1 152058541 152058541 G A TCHHL1 Silent p.F539F 0.48 TCGA-DA-A1HV-06 1 152129289 152129289 C T RPTN Missense_Mutation p.G96S 0.23 tolerated(0.1) benign(0.013) TCGA-DA-A1HV-06 1 152279060 152279060 C T FLG Missense_Mutation p.E2768K 0.11 benign(0.102) TCGA-DA-A1HV-06 1 152284089 152284089 C T FLG Silent p.Q1091Q 0.50 TCGA-DA-A1HV-06 1 152286754 152286754 C T FLG Missense_Mutation p.R203K 0.36 probably_damaging(0.914) TCGA-DA-A1HV-06 1 152328226 152328226 G A FLG2 Missense_Mutation p.S679F 0.32 unknown(0) TCGA-DA-A1HV-06 1 152382337 152382337 C T CRNN Silent p.G407G 0.51 TCGA-DA-A1HV-06 1 152552287 152552287 C T LCE3D Silent p.G42G 0.17 TCGA-DA-A1HV-06 1 152733600 152733600 C T KPRP Silent p.D512D 0.31 TCGA-DA-A1HV-06 1 152748928 152748928 G A LCE1F Silent p.P27P 0.48 TCGA-DA-A1HV-06 1 152777802 152777802 G A LCE1C Silent p.C51C 0.20 TCGA-DA-A1HV-06 1 152777809 152777809 C T LCE1C Missense_Mutation p.G49E 0.24 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1HV-06 1 153177315 153177315 C T LELP1 Silent p.F44F 0.33 TCGA-DA-A1HV-06 1 153309709 153309709 G A PGLYRP4 Silent p.T297T 0.55 TCGA-DA-A1HV-06 1 153330861 153330861 G A S100A9 Silent p.Q34Q 0.44 TCGA-DA-A1HV-06 1 155735709 155735709 A C GON4L Silent p.V1185V 0.19 TCGA-DA-A1HV-06 1 156213576 156213576 A T PAQR6 3'UTR 0.27 TCGA-DA-A1HV-06 1 156374353 156374353 G A C1orf61 Missense_Mutation p.S155F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-DA-A1HV-06 1 156756879 156756879 C T PRCC Silent p.A332A 0.19 TCGA-DA-A1HV-06 1 157514089 157514089 G A FCRL5 Silent p.V269V 0.23 TCGA-DA-A1HV-06 1 157522195 157522195 C T FCRL5 5'UTR 0.32 TCGA-DA-A1HV-06 1 158368870 158368870 G A OR10T2 Silent p.H129H 0.16 TCGA-DA-A1HV-06 1 158368948 158368948 G A OR10T2 Silent p.F103F 0.25 TCGA-DA-A1HV-06 1 158389888 158389888 A T OR10K2 Missense_Mutation p.F257I 0.17 tolerated(1) probably_damaging(0.999) TCGA-DA-A1HV-06 1 158389889 158389889 G A OR10K2 Silent p.S256S 0.18 TCGA-DA-A1HV-06 1 158390029 158390029 G A OR10K2 Missense_Mutation p.P210S 0.46 tolerated(0.14) probably_damaging(1) TCGA-DA-A1HV-06 1 158390631 158390631 A C OR10K2 Missense_Mutation p.V9G 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-DA-A1HV-06 1 158436014 158436014 C T OR10K1 Silent p.I221I 0.22 TCGA-DA-A1HV-06 1 158582604 158582604 G A SPTA1 Intron 0.48 TCGA-DA-A1HV-06 1 158609764 158609764 G A SPTA1 Missense_Mutation p.H1591Y 0.18 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 1 158736023 158736023 C T OR6N1 Silent p.L150L 0.57 TCGA-DA-A1HV-06 1 158746967 158746967 G A OR6N2 Silent p.F153F 0.34 TCGA-DA-A1HV-06 1 159505736 159505736 C T OR10J5 Missense_Mutation p.G21E 0.17 tolerated(0.11) benign(0.071) TCGA-DA-A1HV-06 1 159900224 159900224 G A IGSF9 Missense_Mutation p.P607S 0.34 deleterious(0.02) benign(0.342) TCGA-DA-A1HV-06 1 160519762 160519762 G A CD84 Missense_Mutation p.P306L 0.58 deleterious(0.01) possibly_damaging(0.629) TCGA-DA-A1HV-06 1 160788033 160788033 G A LY9 Nonsense_Mutation p.W456* 0.17 TCGA-DA-A1HV-06 1 162337146 162337146 G A NOS1AP Silent p.T470T 0.50 TCGA-DA-A1HV-06 1 162725007 162725007 T C DDR2 Missense_Mutation p.V160A 0.33 tolerated(0.16) possibly_damaging(0.558) TCGA-DA-A1HV-06 1 162731107 162731107 C T DDR2 Missense_Mutation p.P321L 0.23 tolerated(0.28) benign(0.001) TCGA-DA-A1HV-06 1 16374527 16374527 C T CLCNKB Silent p.F162F 0.26 TCGA-DA-A1HV-06 1 164789377 164789377 G A PBX1 Missense_Mutation p.D356N 0.25 deleterious(0.04) possibly_damaging(0.52) TCGA-DA-A1HV-06 1 16945403 16945403 G A RP5-1182A14.5 3'Flank 0.18 TCGA-DA-A1HV-06 1 169578799 169578799 C T SELP Missense_Mutation p.D426N 0.34 tolerated(0.06) possibly_damaging(0.564) TCGA-DA-A1HV-06 1 17023188 17023188 G A ESPNP Intron 0.17 TCGA-DA-A1HV-06 1 170961428 170961428 G A MROH9 Silent p.G384G 0.34 TCGA-DA-A1HV-06 1 171292163 171292163 G A FMO4 Missense_Mutation p.M51I 0.51 deleterious(0.01) benign(0.345) TCGA-DA-A1HV-06 1 171621369 171621369 C G MYOC Missense_Mutation p.R128P 0.55 deleterious(0.02) possibly_damaging(0.878) TCGA-DA-A1HV-06 1 172501615 172501615 G A SUCO 5'Flank 0.19 TCGA-DA-A1HV-06 1 173593929 173593929 G A ANKRD45 Missense_Mutation p.P243S 0.18 deleterious(0.02) benign(0.091) TCGA-DA-A1HV-06 1 173628503 173628503 C T ANKRD45 Missense_Mutation p.E19K 0.22 tolerated_low_confidence(0.08) unknown(0) TCGA-DA-A1HV-06 1 175375474 175375474 G A TNR Missense_Mutation p.P126L 0.42 tolerated(0.15) benign(0.001) TCGA-DA-A1HV-06 1 176525643 176525643 C T PAPPA2 Missense_Mutation p.S62F 0.09 deleterious_low_confidence(0) benign(0.046) TCGA-DA-A1HV-06 1 17657566 17657566 C T PADI4 Silent p.S65S 0.23 TCGA-DA-A1HV-06 1 176668504 176668504 C T PAPPA2 Silent p.I1005I 0.50 TCGA-DA-A1HV-06 1 176833486 176833486 C T ASTN1 Silent p.R1273R 0.22 TCGA-DA-A1HV-06 1 177001937 177001937 G A ASTN1 Silent p.L174L 0.21 TCGA-DA-A1HV-06 1 177001938 177001938 G A ASTN1 Silent p.I173I 0.21 TCGA-DA-A1HV-06 1 17725327 17725327 C T PADI6 RNA 0.40 TCGA-DA-A1HV-06 1 178421659 178421659 C T RASAL2 Silent p.L627L 0.41 TCGA-DA-A1HV-06 1 178425968 178425968 C T RASAL2 Missense_Mutation p.S775F 0.44 deleterious(0.01) possibly_damaging(0.857) TCGA-DA-A1HV-06 1 179494553 179494553 C T AXDND1 Nonsense_Mutation p.Q861* 0.17 TCGA-DA-A1HV-06 1 179620094 179620094 C T TDRD5 Silent p.I631I 0.61 TCGA-DA-A1HV-06 1 179886931 179886931 C T TOR1AIP1 Missense_Mutation p.R437C 0.19 tolerated(0.08) possibly_damaging(0.803) TCGA-DA-A1HV-06 1 181021477 181021477 G A MR1 Missense_Mutation p.M237I 0.30 tolerated(0.17) benign(0.038) TCGA-DA-A1HV-06 1 18149783 18149783 G A ACTL8 Missense_Mutation p.E94K 0.53 tolerated(0.06) benign(0.183) TCGA-DA-A1HV-06 1 182617273 182617273 T C RGS8 Missense_Mutation p.E138G 0.20 deleterious(0) possibly_damaging(0.562) TCGA-DA-A1HV-06 1 182617274 182617274 C T RGS8 Missense_Mutation p.E138K 0.19 deleterious(0) benign(0.314) TCGA-DA-A1HV-06 1 183835180 183835180 C T RGL1 Missense_Mutation p.S168L 0.25 tolerated(0.08) benign(0.309) TCGA-DA-A1HV-06 1 185704017 185704017 C T HMCN1 Missense_Mutation p.P36S 0.47 possibly_damaging(0.857) TCGA-DA-A1HV-06 1 186083236 186083236 C T HMCN1 Silent p.L3753L 0.16 TCGA-DA-A1HV-06 1 186281821 186281821 A - TPR 3'UTR 0.36 TCGA-DA-A1HV-06 1 186415666 186415666 C T PDC Silent p.E35E 0.18 TCGA-DA-A1HV-06 1 18809329 18809329 C T KLHDC7A Silent p.L618L 0.44 TCGA-DA-A1HV-06 1 19180918 19180918 G A TAS1R2 Missense_Mutation p.P349L 0.48 tolerated(0.57) benign(0.11) TCGA-DA-A1HV-06 1 192985435 192985435 G A UCHL5 3'UTR 0.69 TCGA-DA-A1HV-06 1 196642191 196642191 G A CFH Missense_Mutation p.A48T 0.52 deleterious(0.02) probably_damaging(0.985) TCGA-DA-A1HV-06 1 196695951 196695951 C T CFH Missense_Mutation p.S706F 0.65 deleterious(0.05) benign(0.24) TCGA-DA-A1HV-06 1 197704874 197704874 G A DENND1B Intron 0.57 TCGA-DA-A1HV-06 1 200880589 200880589 C T C1orf106 Missense_Mutation p.S323F 0.19 tolerated(0.11) benign(0.004) TCGA-DA-A1HV-06 1 201046074 201046074 G A CACNA1S Missense_Mutation p.P601S 0.29 deleterious(0.04) probably_damaging(1) TCGA-DA-A1HV-06 1 201860574 201860574 C T SHISA4 Missense_Mutation p.P142L 0.22 deleterious(0.01) benign(0.101) TCGA-DA-A1HV-06 1 202128611 202128611 C G PTPN7 Intron 0.22 TCGA-DA-A1HV-06 1 203317352 203317352 G A FMOD Missense_Mutation p.S16F 0.17 deleterious(0) benign(0.355) TCGA-DA-A1HV-06 1 204433193 204433193 C A PIK3C2B Silent p.V419V 0.20 TCGA-DA-A1HV-06 1 205764127 205764127 G A SLC41A1 Silent p.A409A 0.21 TCGA-DA-A1HV-06 1 206773087 206773087 C T EIF2D Missense_Mutation p.R351K 0.27 tolerated(0.26) benign(0.008) TCGA-DA-A1HV-06 1 207103589 207103589 G A PIGR 3'UTR 0.33 TCGA-DA-A1HV-06 1 207739232 207739232 G A CR1 Missense_Mutation p.E1306K 0.19 tolerated(0.29) benign(0.051) TCGA-DA-A1HV-06 1 207758068 207758068 G A CR1 Missense_Mutation p.G1793R 0.46 deleterious(0) probably_damaging(0.981) TCGA-DA-A1HV-06 1 209797343 209797343 C T LAMB3 Missense_Mutation p.R660Q 0.18 tolerated(0.54) benign(0.001) TCGA-DA-A1HV-06 1 215901413 215901413 G A USH2A Missense_Mutation p.P4009S 0.22 possibly_damaging(0.483) TCGA-DA-A1HV-06 1 216073536 216073536 G A USH2A Missense_Mutation p.S2492L 0.44 benign(0.243) TCGA-DA-A1HV-06 1 216251499 216251499 G A USH2A Missense_Mutation p.S1835L 0.45 probably_damaging(0.996) TCGA-DA-A1HV-06 1 217856630 217856630 C T SPATA17 Missense_Mutation p.R108W 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 1 21890535 21890535 G A ALPL Silent p.G158G 0.26 TCGA-DA-A1HV-06 1 220267774 220267774 C T IARS2 Silent p.P72P 0.50 TCGA-DA-A1HV-06 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.26 deleterious(0) probably_damaging(0.977) TCGA-DA-A1HV-06 1 220316450 220316450 C T IARS2 Missense_Mutation p.P909S 0.15 tolerated(0.24) possibly_damaging(0.517) TCGA-DA-A1HV-06 1 22150814 22150814 C T HSPG2 Missense_Mutation p.G4267E 0.43 probably_damaging(1) TCGA-DA-A1HV-06 1 223984142 223984142 G A TP53BP2 Missense_Mutation p.P700L 0.45 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 1 228505765 228505765 G A OBSCN Silent p.Q5631Q 0.40 TCGA-DA-A1HV-06 1 228873457 228873457 A G RHOU Silent p.Q100Q 0.11 TCGA-DA-A1HV-06 1 229738560 229738560 A C TAF5L Missense_Mutation p.S118R 0.25 tolerated(0.09) benign(0.043) TCGA-DA-A1HV-06 1 22987852 22987852 C T C1QB Silent p.F245F 0.23 TCGA-DA-A1HV-06 1 230841681 230841681 G A AGT Silent p.P374P 0.20 TCGA-DA-A1HV-06 1 23233345 23233345 C T EPHB2 Silent p.F678F 0.16 TCGA-DA-A1HV-06 1 233190014 233190014 C T PCNXL2 Missense_Mutation p.G1451R 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 1 233372670 233372670 G A PCNXL2 Missense_Mutation p.S760F 0.56 deleterious(0) probably_damaging(0.947) TCGA-DA-A1HV-06 1 233518316 233518316 G A MLK4 Silent p.E990E 0.19 TCGA-DA-A1HV-06 1 235914507 235914507 C T LYST Intron 0.25 TCGA-DA-A1HV-06 1 240370842 240370842 C T FMN2 Silent p.P910P 0.53 TCGA-DA-A1HV-06 1 240979694 240979694 C T RGS7 Missense_Mutation p.D236N 0.35 tolerated(0.28) probably_damaging(0.994) TCGA-DA-A1HV-06 1 244756834 244756834 C T C1orf101 Missense_Mutation p.P753S 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-DA-A1HV-06 1 247655000 247655000 G A OR2W5 RNA 0.15 TCGA-DA-A1HV-06 1 247752420 247752420 C T OR2G2 Silent p.I253I 0.47 TCGA-DA-A1HV-06 1 247875901 247875901 G A OR6F1 Missense_Mutation p.H53Y 0.23 tolerated(0.7) benign(0.105) TCGA-DA-A1HV-06 1 248343672 248343672 C T OR2M2 Missense_Mutation p.P129S 0.48 deleterious(0.02) possibly_damaging(0.725) TCGA-DA-A1HV-06 1 248436395 248436395 G A OR2T33 Missense_Mutation p.S241L 0.11 deleterious(0) probably_damaging(0.984) TCGA-DA-A1HV-06 1 248458168 248458168 G T OR2T12 Missense_Mutation p.T238N 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 1 248458211 248458211 G A OR2T12 Silent p.L224L 0.27 TCGA-DA-A1HV-06 1 248487354 248487354 C T OR2M7 Missense_Mutation p.E173K 0.51 tolerated(0.2) benign(0.119) TCGA-DA-A1HV-06 1 248685105 248685105 C T OR2G6 Missense_Mutation p.S53F 0.42 deleterious(0.04) benign(0.008) TCGA-DA-A1HV-06 1 248756748 248756748 C T OR2T10 Missense_Mutation p.G108R 0.32 tolerated(0.07) possibly_damaging(0.786) TCGA-DA-A1HV-06 1 25715555 25715555 G A RHCE Missense_Mutation p.S284L 0.49 deleterious(0.01) benign(0.063) TCGA-DA-A1HV-06 1 26507009 26507009 C T CNKSR1 Nonsense_Mutation p.Q40* 0.25 TCGA-DA-A1HV-06 1 26883501 26883501 C T RPS6KA1 Missense_Mutation p.R341C 0.44 deleterious(0) probably_damaging(0.98) TCGA-DA-A1HV-06 1 27949640 27949640 A C FGR Missense_Mutation p.L81R 0.56 deleterious(0.04) benign(0.282) TCGA-DA-A1HV-06 1 28075618 28075618 C T FAM76A Silent p.I218I 0.27 TCGA-DA-A1HV-06 1 28354386 28354386 G T EYA3 Missense_Mutation p.S138Y 0.41 deleterious(0.02) benign(0.33) TCGA-DA-A1HV-06 1 28800315 28800315 C T PHACTR4 Missense_Mutation p.T368I 0.44 tolerated(0.08) benign(0.028) TCGA-DA-A1HV-06 1 29319891 29319891 G A EPB41 Missense_Mutation p.G173E 0.46 tolerated(1) benign(0.004) TCGA-DA-A1HV-06 1 32196485 32196485 G A BAI2 Silent p.A1432A 0.53 TCGA-DA-A1HV-06 1 32205771 32205771 G A BAI2 Silent p.F666F 0.28 TCGA-DA-A1HV-06 1 34008398 34008398 C T CSMD2 Missense_Mutation p.G2923R 0.23 tolerated(0.19) probably_damaging(1) TCGA-DA-A1HV-06 1 34208974 34208974 G A CSMD2 Missense_Mutation p.P654S 0.16 deleterious(0.01) possibly_damaging(0.855) TCGA-DA-A1HV-06 1 3662421 3662421 G A TP73-AS1 RNA 0.24 TCGA-DA-A1HV-06 1 3673304 3673304 C T CCDC27 Silent p.L187L 0.46 TCGA-DA-A1HV-06 1 38079859 38079859 G A RSPO1 Missense_Mutation p.P145S 0.53 tolerated(0.08) benign(0.032) TCGA-DA-A1HV-06 1 39800121 39800121 C T MACF1 Intron 0.48 TCGA-DA-A1HV-06 1 40363564 40363564 C T MYCL Missense_Mutation p.R222Q 0.53 deleterious(0.04) benign(0.176) TCGA-DA-A1HV-06 1 40713630 40713630 C T TMCO2 5'UTR 0.20 TCGA-DA-A1HV-06 1 40928671 40928671 G A ZFP69B Missense_Mutation p.E339K 0.42 deleterious(0.01) probably_damaging(0.946) TCGA-DA-A1HV-06 1 41012620 41012620 C T ZNF684 Missense_Mutation p.H209Y 0.44 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 1 42621297 42621297 G A GUCA2B 3'UTR 0.16 TCGA-DA-A1HV-06 1 45223287 45223287 C T KIF2C Missense_Mutation p.A346V 0.51 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 1 47399661 47399661 G A CYP4A11 Silent p.L393L 0.41 TCGA-DA-A1HV-06 1 47548030 47548030 G A CYP4Z1 Missense_Mutation p.G130D 0.50 deleterious(0) probably_damaging(0.989) TCGA-DA-A1HV-06 1 47610066 47610066 G A CYP4A22 Silent p.K276K 0.33 TCGA-DA-A1HV-06 1 4772338 4772338 C T AJAP1 Silent p.S136S 0.45 TCGA-DA-A1HV-06 1 48865252 48865252 G C SPATA6 Nonsense_Mutation p.S184* 0.23 TCGA-DA-A1HV-06 1 53600042 53600042 G A SLC1A7 Silent p.I65I 0.46 TCGA-DA-A1HV-06 1 55148383 55148383 C T MROH7 Silent p.V812V 0.40 TCGA-DA-A1HV-06 1 57383409 57383409 G A C8A 3'UTR 0.18 TCGA-DA-A1HV-06 1 57395138 57395138 G A C8B Missense_Mutation p.P572L 0.26 tolerated(0.16) benign(0.002) TCGA-DA-A1HV-06 1 57409439 57409439 G A C8B Silent p.A388A 0.19 TCGA-DA-A1HV-06 1 57431682 57431682 G A C8B 5'UTR 0.52 TCGA-DA-A1HV-06 1 60499180 60499180 G A C1orf87 Missense_Mutation p.R333C 0.40 deleterious(0) possibly_damaging(0.736) TCGA-DA-A1HV-06 1 62676049 62676049 G A L1TD1 Missense_Mutation p.E535K 0.38 tolerated(0.44) benign(0.078) TCGA-DA-A1HV-06 1 6354942 6354942 G A ACOT7 Missense_Mutation p.H281Y 0.21 tolerated(0.15) benign(0.056) TCGA-DA-A1HV-06 1 66102189 66102189 G A LEPR Missense_Mutation p.E997K 0.27 tolerated(0.36) benign(0.15) TCGA-DA-A1HV-06 1 67147693 67147693 C T SGIP1 Missense_Mutation p.S319F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.758) TCGA-DA-A1HV-06 1 68912463 68912463 G A RPE65 Missense_Mutation p.H59Y 0.51 deleterious(0.02) probably_damaging(1) TCGA-DA-A1HV-06 1 74621505 74621505 A C LRRIQ3 Missense_Mutation p.S207A 0.60 tolerated(0.15) benign(0.025) TCGA-DA-A1HV-06 1 75055476 75055476 C T C1orf173 Missense_Mutation p.G672E 0.45 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 1 75171957 75171957 G A CRYZ 3'UTR 0.39 TCGA-DA-A1HV-06 1 75171991 75171991 G A CRYZ Missense_Mutation p.L327F 0.40 deleterious(0.03) possibly_damaging(0.505) TCGA-DA-A1HV-06 1 7724071 7724071 C T CAMTA1 Silent p.F488F 0.27 TCGA-DA-A1HV-06 1 79404875 79404875 T C ELTD1 Missense_Mutation p.K132E 0.19 tolerated(0.12) benign(0.008) TCGA-DA-A1HV-06 1 8075700 8075700 C T ERRFI1 5'UTR 0.41 TCGA-DA-A1HV-06 1 809712 809712 G A FAM41C 5'Flank 0.19 TCGA-DA-A1HV-06 1 809736 809736 C T FAM41C 5'Flank 0.45 TCGA-DA-A1HV-06 1 8420722 8420722 G A RERE Missense_Mutation p.P949S 0.38 unknown(0) TCGA-DA-A1HV-06 1 86283719 86283719 G A COL24A1 Missense_Mutation p.P1281S 0.50 tolerated(0.05) benign(0.21) TCGA-DA-A1HV-06 1 87108233 87108233 G A RP4-651E10.4 Intron 0.43 TCGA-DA-A1HV-06 1 879473 879473 G C SAMD11 Missense_Mutation p.Q662H 0.12 deleterious(0.03) benign(0.053) TCGA-DA-A1HV-06 1 879474 879474 G A SAMD11 Missense_Mutation p.E663K 0.13 deleterious(0) possibly_damaging(0.574) TCGA-DA-A1HV-06 1 89846169 89846169 G A GBP6 Missense_Mutation p.G284R 0.17 deleterious(0.01) possibly_damaging(0.86) TCGA-DA-A1HV-06 1 908910 908910 G A PLEKHN1 Missense_Mutation p.D442N 0.55 deleterious(0.03) benign(0.158) TCGA-DA-A1HV-06 1 9097825 9097825 G A SLC2A5 Silent p.F442F 0.25 TCGA-DA-A1HV-06 1 92446543 92446543 C T BRDT Silent p.L520L 0.46 TCGA-DA-A1HV-06 1 9323951 9323951 C T H6PD Missense_Mutation p.H467Y 0.56 tolerated(0.1) benign(0.023) TCGA-DA-A1HV-06 1 9416449 9416449 C T SPSB1 Missense_Mutation p.P167S 0.16 tolerated(0.44) benign(0.003) TCGA-DA-A1HV-06 1 9416450 9416450 C T SPSB1 Missense_Mutation p.P167L 0.16 tolerated(0.05) benign(0.011) TCGA-DA-A1HV-06 1 94520859 94520859 G A ABCA4 Missense_Mutation p.P799S 0.41 tolerated(0.08) benign(0.053) TCGA-DA-A1HV-06 1 94670745 94670745 G A ARHGAP29 Missense_Mutation p.S190F 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-DA-A1HV-06 20 11903450 11903450 C T BTBD3 Silent p.F235F 0.32 TCGA-DA-A1HV-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.29 tolerated(0.25) probably_damaging(0.996) TCGA-DA-A1HV-06 20 18142489 18142489 C T CSRP2BP Silent p.P236P 0.37 TCGA-DA-A1HV-06 20 18794751 18794751 G A SCP2D1 Missense_Mutation p.G98R 0.44 deleterious(0) probably_damaging(0.956) TCGA-DA-A1HV-06 20 19665768 19665768 G A SLC24A3 Missense_Mutation p.A363T 0.31 tolerated(0.84) benign(0.001) TCGA-DA-A1HV-06 20 23016129 23016129 C T SSTR4 Silent p.A3A 0.36 TCGA-DA-A1HV-06 20 23433416 23433416 G A CST11 Silent p.L11L 0.21 TCGA-DA-A1HV-06 20 24646006 24646006 G A SYNDIG1 Missense_Mutation p.D215N 0.31 deleterious(0.01) possibly_damaging(0.753) TCGA-DA-A1HV-06 20 2559813 2559813 G A TMC2 Missense_Mutation p.D223N 0.29 tolerated(0.25) possibly_damaging(0.896) TCGA-DA-A1HV-06 20 30419644 30419644 C T MYLK2 Silent p.I521I 0.16 TCGA-DA-A1HV-06 20 30659560 30659560 C G HCK Missense_Mutation p.P53R 0.44 tolerated(0.41) benign(0.008) TCGA-DA-A1HV-06 20 31023033 31023033 C T ASXL1 Missense_Mutation p.P840S 0.13 tolerated_low_confidence(0.21) possibly_damaging(0.827) TCGA-DA-A1HV-06 20 31598913 31598913 C T BPIFB2 Nonsense_Mutation p.Q65* 0.14 TCGA-DA-A1HV-06 20 31607460 31607460 C T BPIFB2 Silent p.L328L 0.34 TCGA-DA-A1HV-06 20 31659974 31659974 G A BPIFB3 Splice_Site p.X442_splice 0.39 TCGA-DA-A1HV-06 20 32251358 32251358 C T C20orf144 Silent p.L49L 0.40 TCGA-DA-A1HV-06 20 32379345 32379345 C T ZNF341 3'UTR 0.38 TCGA-DA-A1HV-06 20 33834786 33834786 G A MMP24 Silent p.T130T 0.44 TCGA-DA-A1HV-06 20 33875403 33875403 G A FAM83C Silent p.S393S 0.21 TCGA-DA-A1HV-06 20 35060224 35060224 C T DLGAP4 Missense_Mutation p.S35L 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 20 35061085 35061085 C T DLGAP4 Missense_Mutation p.S322F 0.24 deleterious(0) probably_damaging(0.957) TCGA-DA-A1HV-06 20 35545216 35545216 C T SAMHD1 Missense_Mutation p.G324E 0.42 deleterious(0) probably_damaging(0.948) TCGA-DA-A1HV-06 20 36612003 36612003 G A TTI1 Missense_Mutation p.T1042I 0.25 tolerated(0.47) benign(0.005) TCGA-DA-A1HV-06 20 36766765 36766765 G A TGM2 Silent p.A455A 0.60 TCGA-DA-A1HV-06 20 37570694 37570694 C T FAM83D Silent p.I222I 0.36 TCGA-DA-A1HV-06 20 37653908 37653908 C T DHX35 Silent p.F569F 0.37 TCGA-DA-A1HV-06 20 39984674 39984674 C T LPIN3 Silent p.I601I 0.12 TCGA-DA-A1HV-06 20 39991482 39991482 G A EMILIN3 Missense_Mutation p.P243S 0.24 tolerated(0.24) benign(0.004) TCGA-DA-A1HV-06 20 40713401 40713401 G A PTPRT Silent p.L1353L 0.17 TCGA-DA-A1HV-06 20 40743863 40743863 G A PTPRT Silent p.V1025V 0.43 TCGA-DA-A1HV-06 20 40770569 40770569 C T PTPRT Missense_Mutation p.G919E 0.13 tolerated(0.24) probably_damaging(1) TCGA-DA-A1HV-06 20 40770570 40770570 C T PTPRT Missense_Mutation p.G919R 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 20 41101158 41101158 C T PTPRT Missense_Mutation p.A400T 0.14 deleterious(0.01) benign(0.036) TCGA-DA-A1HV-06 20 44162996 44162996 C T WFDC6 3'UTR 0.11 TCGA-DA-A1HV-06 20 44163068 44163068 G A WFDC6 3'UTR 0.42 TCGA-DA-A1HV-06 20 44598277 44598277 G A ZNF335 Silent p.L85L 0.19 TCGA-DA-A1HV-06 20 44663604 44663604 G A SLC12A5 Missense_Mutation p.E47K 0.08 deleterious(0.04) possibly_damaging(0.844) TCGA-DA-A1HV-06 20 45927672 45927672 G A ZMYND8 Missense_Mutation p.P85L 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A1HV-06 20 46301014 46301014 C T SULF2 Missense_Mutation p.E502K 0.48 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 20 47635467 47635467 C T ARFGEF2 Missense_Mutation p.P1519L 0.22 tolerated(0.51) benign(0) TCGA-DA-A1HV-06 20 47989816 47989816 C T KCNB1 Missense_Mutation p.D761N 0.21 tolerated_low_confidence(0.25) possibly_damaging(0.678) TCGA-DA-A1HV-06 20 48166673 48166673 G A PTGIS Missense_Mutation p.A43V 0.47 tolerated(0.26) benign(0.385) TCGA-DA-A1HV-06 20 48746165 48746165 G A TMEM189-UBE2V1 Silent p.F132F 0.35 TCGA-DA-A1HV-06 20 49626147 49626147 G A KCNG1 Silent p.N243N 0.30 TCGA-DA-A1HV-06 20 50235499 50235499 G A ATP9A Silent p.S733S 0.49 TCGA-DA-A1HV-06 20 50769921 50769921 G A ZFP64 Silent p.I270I 0.43 TCGA-DA-A1HV-06 20 51870456 51870456 G A TSHZ2 Silent p.R153R 0.32 TCGA-DA-A1HV-06 20 55027636 55027636 C T CASS4 Silent p.F468F 0.14 TCGA-DA-A1HV-06 20 55108339 55108339 C T FAM209B 5'UTR 0.33 TCGA-DA-A1HV-06 20 57899604 57899604 G A EDN3 3'UTR 0.46 TCGA-DA-A1HV-06 20 60892007 60892007 G A LAMA5 Silent p.I2528I 0.51 TCGA-DA-A1HV-06 20 61595008 61595008 C T SLC17A9 Silent p.F266F 0.54 TCGA-DA-A1HV-06 20 61834424 61834424 G A YTHDF1 Missense_Mutation p.P290S 0.50 tolerated(0.6) benign(0.001) TCGA-DA-A1HV-06 20 62175640 62175640 C T SRMS Missense_Mutation p.E140K 0.56 tolerated(0.8) benign(0.01) TCGA-DA-A1HV-06 20 62378417 62378417 C T ZBTB46 Missense_Mutation p.E546K 0.66 deleterious(0.03) possibly_damaging(0.636) TCGA-DA-A1HV-06 20 8678391 8678391 C T PLCB1 Silent p.I376I 0.29 TCGA-DA-A1HV-06 20 8698344 8698344 C T PLCB1 Silent p.S454S 0.31 TCGA-DA-A1HV-06 20 8698409 8698409 G A PLCB1 Missense_Mutation p.G476E 0.42 tolerated(0.07) benign(0.007) TCGA-DA-A1HV-06 20 9546694 9546694 C T PAK7 Missense_Mutation p.G443E 0.27 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 20 9561101 9561101 A C PAK7 Silent p.P227P 0.30 TCGA-DA-A1HV-06 20 9561102 9561102 G A PAK7 Missense_Mutation p.P227L 0.29 tolerated_low_confidence(0.14) benign(0.002) TCGA-DA-A1HV-06 21 10862794 10862794 G A IGHV1OR21-1 Silent p.V30V 0.14 TCGA-DA-A1HV-06 21 15558358 15558358 G A LIPI Silent p.F176F 0.43 TCGA-DA-A1HV-06 21 15561519 15561519 G A LIPI Missense_Mutation p.P111S 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 21 26965265 26965265 G A MRPL39 Silent p.F260F 0.23 TCGA-DA-A1HV-06 21 30252202 30252202 G A N6AMT1 Missense_Mutation p.P129L 0.18 probably_damaging(0.956) TCGA-DA-A1HV-06 21 32554834 32554834 C T TIAM1 Missense_Mutation p.E931K 0.68 tolerated(0.41) benign(0.014) TCGA-DA-A1HV-06 21 34117948 34117948 C T PAXBP1 Missense_Mutation p.D669N 0.48 tolerated(0.07) benign(0.078) TCGA-DA-A1HV-06 21 35260578 35260578 G A ITSN1 Missense_Mutation p.D1714N 0.29 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HV-06 21 37581028 37581028 C T DOPEY2 Silent p.L169L 0.23 TCGA-DA-A1HV-06 21 37602826 37602826 C T DOPEY2 Missense_Mutation p.P582S 0.27 deleterious(0.05) benign(0.175) TCGA-DA-A1HV-06 21 41033004 41033004 A T B3GALT5 Missense_Mutation p.K173I 0.32 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 21 41160099 41160099 C T IGSF5 Missense_Mutation p.R314C 0.50 deleterious(0.02) benign(0.061) TCGA-DA-A1HV-06 21 41301006 41301006 C T PCP4 Silent p.F53F 0.30 TCGA-DA-A1HV-06 21 41719784 41719784 C T DSCAM Silent p.E341E 0.26 TCGA-DA-A1HV-06 21 42080515 42080515 G A DSCAM Missense_Mutation p.H76Y 0.39 deleterious(0.02) probably_damaging(0.988) TCGA-DA-A1HV-06 21 43645804 43645804 G A ABCG1 Silent p.E22E 0.57 TCGA-DA-A1HV-06 21 44838314 44838314 G A SIK1 Missense_Mutation p.P524S 0.27 tolerated(0.4) benign(0.091) TCGA-DA-A1HV-06 21 45711070 45711070 C T AIRE Silent p.S324S 0.48 TCGA-DA-A1HV-06 21 45789055 45789055 C T TRPM2 Intron 0.30 TCGA-DA-A1HV-06 21 45821572 45821572 G A TRPM2 Missense_Mutation p.R777K 0.57 tolerated(0.27) benign(0.005) TCGA-DA-A1HV-06 21 47574148 47574148 G A FTCD Silent p.F51F 0.44 TCGA-DA-A1HV-06 21 47711300 47711300 T C YBEY Missense_Mutation p.L88S 0.18 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 22 17072308 17072308 C T CCT8L2 Missense_Mutation p.R378K 0.46 deleterious(0.01) possibly_damaging(0.883) TCGA-DA-A1HV-06 22 17073120 17073120 G A CCT8L2 Silent p.F107F 0.35 TCGA-DA-A1HV-06 22 21330536 21330536 C T AIFM3 Silent p.V280V 0.42 TCGA-DA-A1HV-06 22 21841918 21841918 G A PI4KAP2 RNA 0.37 TCGA-DA-A1HV-06 22 23047164 23047164 G A IGLV3-22 Missense_Mutation p.E68K 0.37 tolerated(1) benign(0.003) TCGA-DA-A1HV-06 22 24125724 24125724 T C MMP11 Missense_Mutation p.F487S 0.36 deleterious_low_confidence(0) benign(0.1) TCGA-DA-A1HV-06 22 24581204 24581204 G A SUSD2 Missense_Mutation p.E309K 0.41 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 22 24621589 24621589 C T GGT5 Missense_Mutation p.G421S 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 22 24938967 24938967 C T GUCD1 3'UTR 0.35 TCGA-DA-A1HV-06 22 25019109 25019109 C A GGT1 Missense_Mutation p.R257S 0.11 tolerated(0.11) benign(0.03) TCGA-DA-A1HV-06 22 26242217 26242217 G A MYO18B Silent p.R1173R 0.42 TCGA-DA-A1HV-06 22 29444392 29444392 C T ZNRF3 Missense_Mutation p.P310S 0.31 tolerated(0.46) probably_damaging(0.98) TCGA-DA-A1HV-06 22 30887647 30887647 C T SEC14L4 Missense_Mutation p.E332K 0.40 tolerated(0.18) benign(0.032) TCGA-DA-A1HV-06 22 30951054 30951054 G A GAL3ST1 Silent p.H386H 0.40 TCGA-DA-A1HV-06 22 31489832 31489832 C T SMTN Intron 0.30 TCGA-DA-A1HV-06 22 32590399 32590399 G A RFPL2 Silent p.A66A 0.32 TCGA-DA-A1HV-06 22 36960623 36960623 G A CACNG2 Silent p.S249S 0.45 TCGA-DA-A1HV-06 22 37470658 37470658 C T TMPRSS6 Missense_Mutation p.R487K 0.34 tolerated(0.14) possibly_damaging(0.804) TCGA-DA-A1HV-06 22 38313740 38313740 C T MICALL1 Missense_Mutation p.L122F 0.45 tolerated(0.48) benign(0.034) TCGA-DA-A1HV-06 22 38355426 38355426 C T POLR2F Missense_Mutation p.P55L 0.31 deleterious(0) possibly_damaging(0.584) TCGA-DA-A1HV-06 22 38824143 38824143 G A KCNJ4 5'UTR 0.45 TCGA-DA-A1HV-06 22 38878600 38878601 TC - KDELR3 3'Flank 0.23 TCGA-DA-A1HV-06 22 39218644 39218644 G A NPTXR Silent p.F491F 0.40 TCGA-DA-A1HV-06 22 39918330 39918330 C T ATF4 Missense_Mutation p.P260L 0.28 deleterious(0) probably_damaging(0.985) TCGA-DA-A1HV-06 22 40057217 40057217 C T CACNA1I Nonsense_Mutation p.R935* 0.25 TCGA-DA-A1HV-06 22 40827451 40827451 G A MKL1 Missense_Mutation p.R33W 0.48 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HV-06 22 42793936 42793936 G A NFAM1 Silent p.D197D 0.35 TCGA-DA-A1HV-06 22 43089219 43089219 C T A4GALT Missense_Mutation p.G247S 0.30 deleterious(0) probably_damaging(0.994) TCGA-DA-A1HV-06 22 44681324 44681324 G A KIAA1644 Nonsense_Mutation p.Q195* 0.28 TCGA-DA-A1HV-06 22 45574472 45574472 C A NUP50 Missense_Mutation p.Q232K 0.14 tolerated(0.38) benign(0.009) TCGA-DA-A1HV-06 22 45726532 45726532 C T FAM118A Missense_Mutation p.H191Y 0.48 deleterious(0.03) probably_damaging(0.919) TCGA-DA-A1HV-06 22 45795022 45795022 C T SMC1B Missense_Mutation p.E356K 0.36 tolerated(0.16) benign(0.073) TCGA-DA-A1HV-06 22 46657456 46657456 C T PKDREJ Silent p.R588R 0.36 TCGA-DA-A1HV-06 22 46807619 46807619 G T CELSR1 Missense_Mutation p.S1550Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 22 48972289 48972289 C T FAM19A5 Intron 0.38 TCGA-DA-A1HV-06 22 50181140 50181140 G A BRD1 Missense_Mutation p.L788F 0.36 tolerated(0.21) possibly_damaging(0.638) TCGA-DA-A1HV-06 22 50483733 50483733 G A TTLL8 Silent p.P234P 0.44 TCGA-DA-A1HV-06 22 50523268 50523268 G A MLC1 Missense_Mutation p.R22W 0.30 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-DA-A1HV-06 22 50686528 50686528 C T HDAC10 Silent p.G376G 0.51 TCGA-DA-A1HV-06 22 50928318 50928318 G A MIOX 3'UTR 0.46 TCGA-DA-A1HV-06 22 50928319 50928319 G A MIOX 3'UTR 0.43 TCGA-DA-A1HV-06 22 51065138 51065138 G A ARSA Silent p.G245G 0.26 TCGA-DA-A1HV-06 2 103006552 103006552 G A IL18R1 Missense_Mutation p.R329K 0.34 tolerated(1) benign(0.006) TCGA-DA-A1HV-06 2 103095587 103095587 G A SLC9A4 Silent p.Q182Q 0.16 TCGA-DA-A1HV-06 2 103149004 103149004 C T SLC9A4 Missense_Mutation p.H752Y 0.32 tolerated(0.43) benign(0.001) TCGA-DA-A1HV-06 2 105924152 105924152 G A TGFBRAP1 Missense_Mutation p.P203S 0.29 tolerated(0.21) probably_damaging(0.934) TCGA-DA-A1HV-06 2 107039547 107039547 G A RGPD3 Missense_Mutation p.P1626S 0.16 tolerated_low_confidence(0.36) benign(0.005) TCGA-DA-A1HV-06 2 107460402 107460402 C T ST6GAL2 Missense_Mutation p.R11Q 0.21 benign(0.115) TCGA-DA-A1HV-06 2 109546583 109546583 G A EDAR Missense_Mutation p.P56L 0.61 tolerated(0.38) probably_damaging(0.957) TCGA-DA-A1HV-06 2 11053003 11053003 G A KCNF1 Missense_Mutation p.D151N 0.19 tolerated(0.25) benign(0.084) TCGA-DA-A1HV-06 2 11053650 11053650 C T KCNF1 Silent p.I366I 0.50 TCGA-DA-A1HV-06 2 114257055 114257055 C T FOXD4L1 Silent p.I74I 0.56 TCGA-DA-A1HV-06 2 116447265 116447265 T A DPP10 Silent p.I152I 0.67 TCGA-DA-A1HV-06 2 11732965 11732965 C T GREB1 Missense_Mutation p.S470L 0.39 tolerated(0.16) probably_damaging(0.991) TCGA-DA-A1HV-06 2 120003076 120003076 C T STEAP3 Missense_Mutation p.P12S 0.24 tolerated(1) benign(0.002) TCGA-DA-A1HV-06 2 120003077 120003077 C T STEAP3 Missense_Mutation p.P12L 0.25 tolerated(0.15) benign(0.003) TCGA-DA-A1HV-06 2 120003228 120003228 C T STEAP3 Silent p.F62F 0.56 TCGA-DA-A1HV-06 2 121746677 121746677 C T GLI2 Missense_Mutation p.P1063S 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1HV-06 2 130832241 130832241 G A POTEF Missense_Mutation p.S935F 0.36 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-DA-A1HV-06 2 130832282 130832282 C T POTEF Silent p.L921L 0.30 TCGA-DA-A1HV-06 2 131981193 131981193 C T POTEE Silent p.A182A 0.31 TCGA-DA-A1HV-06 2 136558221 136558221 G A LCT Missense_Mutation p.P1608S 0.15 tolerated(0.05) benign(0.411) TCGA-DA-A1HV-06 2 137814169 137814169 G A THSD7B Missense_Mutation p.E107K 0.61 tolerated(0.16) possibly_damaging(0.504) TCGA-DA-A1HV-06 2 138329995 138329995 G A THSD7B Missense_Mutation p.G1101S 0.53 tolerated(0.17) unknown(0) TCGA-DA-A1HV-06 2 141143569 141143569 G A LRP1B Missense_Mutation p.T3475I 0.56 possibly_damaging(0.803) TCGA-DA-A1HV-06 2 141641523 141641523 C T LRP1B Nonsense_Mutation p.W1344* 0.39 TCGA-DA-A1HV-06 2 141762966 141762966 C T LRP1B Missense_Mutation p.G814E 0.46 possibly_damaging(0.788) TCGA-DA-A1HV-06 2 143713832 143713832 C T KYNU Missense_Mutation p.P166S 0.16 deleterious(0.03) possibly_damaging(0.535) TCGA-DA-A1HV-06 2 1500508 1500508 G A TPO Missense_Mutation p.G786E 0.32 tolerated(0.05) benign(0.299) TCGA-DA-A1HV-06 2 152512943 152512943 C T NEB Silent p.G2073G 0.53 TCGA-DA-A1HV-06 2 152541387 152541387 C T NEB Missense_Mutation p.D914N 0.68 benign(0.102) TCGA-DA-A1HV-06 2 152739857 152739857 G A CACNB4 Missense_Mutation p.P59S 0.53 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 154800969 154800969 T A GALNT13 5'UTR 0.42 TCGA-DA-A1HV-06 2 155555961 155555961 C T KCNJ3 Missense_Mutation p.S225F 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 160310159 160310159 G A BAZ2B Missense_Mutation p.A100V 0.12 possibly_damaging(0.483) TCGA-DA-A1HV-06 2 162868390 162868390 C T DPP4 Missense_Mutation p.G582E 0.49 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 162881449 162881449 C T DPP4 Silent p.G296G 0.59 TCGA-DA-A1HV-06 2 162894889 162894889 T C DPP4 Missense_Mutation p.N179S 0.39 tolerated(0.66) benign(0.009) TCGA-DA-A1HV-06 2 1653073 1653073 G A PXDN Missense_Mutation p.H827Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 2 165947758 165947758 G A SCN3A Silent p.I1635I 0.43 TCGA-DA-A1HV-06 2 165972057 165972057 C T SCN3A Missense_Mutation p.G1141E 0.49 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1HV-06 2 166536033 166536033 G A CSRNP3 Missense_Mutation p.D510N 0.51 tolerated_low_confidence(0.3) benign(0.382) TCGA-DA-A1HV-06 2 166901716 166901716 C T SCN1A Missense_Mutation p.R500Q 0.47 tolerated(0.06) benign(0.061) TCGA-DA-A1HV-06 2 167262975 167262975 G A SCN7A Silent p.F1388F 0.27 TCGA-DA-A1HV-06 2 167759988 167759988 C T XIRP2 5'UTR 0.15 TCGA-DA-A1HV-06 2 168102277 168102277 C T XIRP2 Missense_Mutation p.H1459Y 0.15 probably_damaging(0.979) TCGA-DA-A1HV-06 2 168103996 168103996 C T XIRP2 Missense_Mutation p.R2032C 0.48 probably_damaging(0.972) TCGA-DA-A1HV-06 2 168725897 168725897 C T B3GALT1 Silent p.F116F 0.20 TCGA-DA-A1HV-06 2 169551552 169551552 C T CERS6 Silent p.I200I 0.38 TCGA-DA-A1HV-06 2 169939917 169939917 G A DHRS9 Missense_Mutation p.R131K 0.14 tolerated(0.42) benign(0.032) TCGA-DA-A1HV-06 2 170076989 170076989 C T LRP2 Missense_Mutation p.G1875S 0.36 benign(0.333) TCGA-DA-A1HV-06 2 173891899 173891899 C T RAPGEF4 Nonsense_Mutation p.Q824* 0.16 TCGA-DA-A1HV-06 2 174130904 174130904 C T MLTK Missense_Mutation p.S610F 0.45 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-DA-A1HV-06 2 174229714 174229714 G A CDCA7 Missense_Mutation p.M297I 0.22 tolerated(0.38) benign(0.023) TCGA-DA-A1HV-06 2 175300867 175300867 G A GPR155 Missense_Mutation p.P864S 0.20 tolerated_low_confidence(0.57) benign(0) TCGA-DA-A1HV-06 2 179213955 179213955 C T OSBPL6 Missense_Mutation p.P356L 0.58 deleterious(0.03) probably_damaging(0.913) TCGA-DA-A1HV-06 2 179214106 179214106 C T OSBPL6 Silent p.I406I 0.14 TCGA-DA-A1HV-06 2 179393049 179393049 T A TTN Nonsense_Mutation p.K35777* 0.23 TCGA-DA-A1HV-06 2 179428764 179428764 C T TTN Silent p.K27365K 0.20 TCGA-DA-A1HV-06 2 179432162 179432162 C T TTN Missense_Mutation p.E26233K 0.25 TCGA-DA-A1HV-06 2 179433511 179433511 C T TTN Missense_Mutation p.R25783Q 0.41 TCGA-DA-A1HV-06 2 179436997 179436997 C T TTN Missense_Mutation p.G24621E 0.54 TCGA-DA-A1HV-06 2 179458165 179458165 T A TTN Missense_Mutation p.E19590D 0.53 TCGA-DA-A1HV-06 2 179606404 179606404 C T TTN Silent p.Q3852Q 0.42 TCGA-DA-A1HV-06 2 179615915 179615915 C T TTN Intron 0.42 TCGA-DA-A1HV-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.36 TCGA-DA-A1HV-06 2 179642597 179642597 G A TTN Silent p.S1438S 0.46 TCGA-DA-A1HV-06 2 179720995 179720995 C T CCDC141 Missense_Mutation p.E952K 0.50 deleterious(0.01) probably_damaging(0.944) TCGA-DA-A1HV-06 2 179736979 179736979 C T CCDC141 Missense_Mutation p.E654K 0.43 tolerated(0.17) benign(0.085) TCGA-DA-A1HV-06 2 182784145 182784145 C T SSFA2 Missense_Mutation p.P1039L 0.44 tolerated(0.2) benign(0.272) TCGA-DA-A1HV-06 2 183070750 183070750 C T PDE1A Silent p.E289E 0.53 TCGA-DA-A1HV-06 2 185802939 185802939 G A ZNF804A Missense_Mutation p.R939K 0.29 tolerated(1) possibly_damaging(0.899) TCGA-DA-A1HV-06 2 187533579 187533579 C T ITGAV Missense_Mutation p.L842F 0.19 tolerated(0.39) possibly_damaging(0.616) TCGA-DA-A1HV-06 2 187627229 187627229 C T FAM171B Silent p.L720L 0.29 TCGA-DA-A1HV-06 2 190554621 190554621 C T ANKAR Missense_Mutation p.P324S 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 191364880 191364880 G A MFSD6 Missense_Mutation p.S771N 0.16 tolerated_low_confidence(0.34) benign(0.001) TCGA-DA-A1HV-06 2 192701120 192701120 C T SDPR Silent p.E269E 0.44 TCGA-DA-A1HV-06 2 196723507 196723507 C T DNAH7 Silent p.K2586K 0.43 TCGA-DA-A1HV-06 2 196740494 196740494 C T DNAH7 Missense_Mutation p.R2064K 0.29 deleterious(0) probably_damaging(0.98) TCGA-DA-A1HV-06 2 196740495 196740495 T C DNAH7 Missense_Mutation p.R2064G 0.31 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 2 196825151 196825151 C T DNAH7 Missense_Mutation p.M908I 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 196913086 196913086 G A DNAH7 Missense_Mutation p.H62Y 0.41 tolerated_low_confidence(0.68) benign(0.021) TCGA-DA-A1HV-06 2 197183420 197183420 C T HECW2 Missense_Mutation p.E732K 0.31 tolerated_low_confidence(0.17) benign(0.008) TCGA-DA-A1HV-06 2 198257176 198257176 G A SF3B1 Missense_Mutation p.H1256Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-DA-A1HV-06 2 201502954 201502954 C T AOX1 Missense_Mutation p.R833C 0.46 deleterious(0.01) probably_damaging(0.973) TCGA-DA-A1HV-06 2 202593804 202593804 A G ALS2 Missense_Mutation p.F895L 0.47 deleterious(0) benign(0.443) TCGA-DA-A1HV-06 2 20402911 20402911 G A SDC1 Missense_Mutation p.P234S 0.52 tolerated(0.11) possibly_damaging(0.457) TCGA-DA-A1HV-06 2 20463139 20463139 G A PUM2 Silent p.S680S 0.17 TCGA-DA-A1HV-06 2 204737458 204737458 G A CTLA4 Missense_Mutation p.G199R 0.42 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 2 206869260 206869260 G A INO80D Silent p.L972L 0.57 TCGA-DA-A1HV-06 2 207170151 207170151 T G ZDBF2 Missense_Mutation p.V300G 0.42 deleterious(0.04) benign(0.03) TCGA-DA-A1HV-06 2 207172122 207172122 G A ZDBF2 Missense_Mutation p.S957N 0.22 tolerated(0.53) benign(0.025) TCGA-DA-A1HV-06 2 20838326 20838326 C T HS1BP3 Missense_Mutation p.E165K 0.23 deleterious(0) benign(0.424) TCGA-DA-A1HV-06 2 21225031 21225031 G A APOB Silent p.F4421F 0.22 TCGA-DA-A1HV-06 2 21229154 21229154 G A APOB Missense_Mutation p.S3529L 0.24 benign(0.033) TCGA-DA-A1HV-06 2 219254608 219254608 C T SLC11A1 Missense_Mutation p.R271W 0.27 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HV-06 2 219289047 219289047 C T VIL1 Silent p.F41F 0.24 TCGA-DA-A1HV-06 2 219411703 219411703 G A USP37 Missense_Mutation p.R181W 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-DA-A1HV-06 2 219525914 219525914 C T BCS1L Silent p.T68T 0.23 TCGA-DA-A1HV-06 2 219745739 219745739 C T WNT10A Missense_Mutation p.P8S 0.73 deleterious_low_confidence(0.03) unknown(0) TCGA-DA-A1HV-06 2 219854926 219854926 G A CRYBA2 3'UTR 0.65 TCGA-DA-A1HV-06 2 219888010 219888010 G A CCDC108 Silent p.F913F 0.11 TCGA-DA-A1HV-06 2 219903208 219903208 C T CCDC108 Silent p.R82R 0.67 TCGA-DA-A1HV-06 2 220098951 220098951 G A ANKZF1 Missense_Mutation p.R382K 0.19 tolerated(0.97) benign(0.001) TCGA-DA-A1HV-06 2 220347557 220347557 T G SPEG Missense_Mutation p.S1873A 0.09 benign(0.443) TCGA-DA-A1HV-06 2 227662073 227662073 T C IRS1 Missense_Mutation p.E461G 0.20 deleterious(0.03) probably_damaging(0.986) TCGA-DA-A1HV-06 2 227898170 227898170 C T COL4A4 Missense_Mutation p.G1178D 0.13 unknown(0) TCGA-DA-A1HV-06 2 227915730 227915730 C T COL4A4 Missense_Mutation p.R1038K 0.21 unknown(0) TCGA-DA-A1HV-06 2 228131218 228131218 G A COL4A3 Silent p.G467G 0.22 TCGA-DA-A1HV-06 2 228881353 228881353 G A SPHKAP Missense_Mutation p.S1406F 0.20 tolerated(0.74) benign(0.005) TCGA-DA-A1HV-06 2 228882627 228882627 C T SPHKAP Silent p.R981R 0.48 TCGA-DA-A1HV-06 2 228882776 228882776 C T SPHKAP Missense_Mutation p.E932K 0.25 deleterious(0) possibly_damaging(0.766) TCGA-DA-A1HV-06 2 228883065 228883065 C T SPHKAP Silent p.L835L 0.23 TCGA-DA-A1HV-06 2 230341907 230341907 C T DNER Missense_Mutation p.G404R 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-DA-A1HV-06 2 230911303 230911303 T G SLC16A14 Missense_Mutation p.K180T 0.15 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HV-06 2 232390102 232390102 G A NMUR1 Silent p.A311A 0.50 TCGA-DA-A1HV-06 2 233626129 233626129 C T GIGYF2 Missense_Mutation p.P172L 0.17 probably_damaging(0.999) TCGA-DA-A1HV-06 2 234367001 234367001 C T DGKD Silent p.A884A 0.54 TCGA-DA-A1HV-06 2 234526553 234526553 G A UGT1A8 Missense_Mutation p.G67E 0.21 tolerated(0.42) benign(0.068) TCGA-DA-A1HV-06 2 234591073 234591073 C T UGT1A7 Missense_Mutation p.P164S 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 2 234873370 234873370 G A TRPM8 Silent p.E616E 0.27 TCGA-DA-A1HV-06 2 234959463 234959463 G A SPP2 Missense_Mutation p.M11I 0.21 tolerated(0.38) benign(0.03) TCGA-DA-A1HV-06 2 237489098 237489098 G A ACKR3 5'UTR 0.43 TCGA-DA-A1HV-06 2 238274452 238274452 C T COL6A3 Silent p.E1909E 0.43 TCGA-DA-A1HV-06 2 238726718 238726718 G A RBM44 Missense_Mutation p.D387N 0.24 tolerated(0.05) probably_damaging(0.928) TCGA-DA-A1HV-06 2 239039003 239039003 G A ESPNL Missense_Mutation p.V550I 0.33 deleterious(0.04) possibly_damaging(0.764) TCGA-DA-A1HV-06 2 241439872 241439872 G A ANKMY1 Silent p.F790F 0.48 TCGA-DA-A1HV-06 2 241537805 241537805 C T CAPN10 Silent p.F660F 0.29 TCGA-DA-A1HV-06 2 241726675 241726675 G A KIF1A Missense_Mutation p.S141F 0.11 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HV-06 2 242396191 242396191 C T FARP2 Missense_Mutation p.P481S 0.22 tolerated(0.27) benign(0.011) TCGA-DA-A1HV-06 2 242755766 242755766 C T NEU4 Missense_Mutation p.P42S 0.49 tolerated(0.11) benign(0.009) TCGA-DA-A1HV-06 2 24535101 24535101 G A ITSN2 Missense_Mutation p.P111L 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HV-06 2 26699831 26699831 C A OTOF Missense_Mutation p.K868N 0.55 deleterious(0) possibly_damaging(0.697) TCGA-DA-A1HV-06 2 271865 271865 G A ACP1 Splice_Site p.X15_splice 0.48 TCGA-DA-A1HV-06 2 27258870 27258870 C T TMEM214 Nonsense_Mutation p.Q224* 0.20 TCGA-DA-A1HV-06 2 29259556 29259556 C T FAM179A Silent p.L856L 0.47 TCGA-DA-A1HV-06 2 29416472 29416472 C T ALK Missense_Mutation p.G1494E 0.48 tolerated(0.06) possibly_damaging(0.856) TCGA-DA-A1HV-06 2 31606010 31606010 A C XDH Missense_Mutation p.F299V 0.23 tolerated(0.71) benign(0.122) TCGA-DA-A1HV-06 2 32341264 32341264 C T SPAST Missense_Mutation p.P361S 0.33 deleterious(0.01) possibly_damaging(0.46) TCGA-DA-A1HV-06 2 32710717 32710717 T A BIRC6 Missense_Mutation p.D2568E 0.17 probably_damaging(0.978) TCGA-DA-A1HV-06 2 33614277 33614277 C T LTBP1 Missense_Mutation p.P1580S 0.26 deleterious(0.03) possibly_damaging(0.855) TCGA-DA-A1HV-06 2 33622339 33622339 G A LTBP1 Missense_Mutation p.M1658I 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1HV-06 2 3726102 3726102 G A ALLC Silent p.G43G 0.23 TCGA-DA-A1HV-06 2 40655980 40655980 C T SLC8A1 Missense_Mutation p.D481N 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 42990069 42990069 C T OXER1 Silent p.K417K 0.41 TCGA-DA-A1HV-06 2 43452413 43452426 GCGAACTGGCACTT - ZFP36L2 Frame_Shift_Del p.K173Afs*296 0.39 TCGA-DA-A1HV-06 2 44079492 44079492 G A ABCG8 Splice_Site p.X188_splice 0.36 TCGA-DA-A1HV-06 2 44079493 44079493 G A ABCG8 Missense_Mutation p.V188M 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 47639606 47639606 C T MSH2 Silent p.S233S 0.32 TCGA-DA-A1HV-06 2 48807923 48807923 C T STON1-GTF2A1L Missense_Mutation p.P51S 0.45 tolerated(1) benign(0.043) TCGA-DA-A1HV-06 2 48808114 48808114 C T STON1-GTF2A1L Silent p.L114L 0.56 TCGA-DA-A1HV-06 2 49190007 49190007 G A FSHR Silent p.A651A 0.18 TCGA-DA-A1HV-06 2 54101580 54101580 G A PSME4 Nonsense_Mutation p.Q1666* 0.40 TCGA-DA-A1HV-06 2 54853249 54853249 C T SPTBN1 Missense_Mutation p.R508W 0.26 deleterious(0) probably_damaging(0.987) TCGA-DA-A1HV-06 2 61528235 61528235 G A USP34 Missense_Mutation p.P1327S 0.42 tolerated(0.08) benign(0.209) TCGA-DA-A1HV-06 2 65299154 65299154 A G CEP68 Silent p.P308P 0.57 TCGA-DA-A1HV-06 2 65299155 65299155 C T CEP68 Silent p.L309L 0.58 TCGA-DA-A1HV-06 2 66796082 66796082 C T MEIS1 Intron 0.59 TCGA-DA-A1HV-06 2 70931469 70931469 G A ADD2 Silent p.F102F 0.26 TCGA-DA-A1HV-06 2 71044171 71044171 G A CLEC4F Silent p.S114S 0.51 TCGA-DA-A1HV-06 2 71839915 71839915 C T DYSF Missense_Mutation p.P1456S 0.18 tolerated(0.69) benign(0.006) TCGA-DA-A1HV-06 2 71906329 71906329 C T DYSF Silent p.P2009P 0.49 TCGA-DA-A1HV-06 2 73717557 73717557 C T ALMS1 Missense_Mutation p.P2823L 0.17 probably_damaging(0.992) TCGA-DA-A1HV-06 2 74718726 74718726 C T TTC31 Missense_Mutation p.A268V 0.47 tolerated(0.08) benign(0.001) TCGA-DA-A1HV-06 2 74718727 74718727 C T TTC31 Silent p.A268A 0.47 TCGA-DA-A1HV-06 2 80101285 80101285 C T CTNNA2 Silent p.A223A 0.43 TCGA-DA-A1HV-06 2 84518063 84518063 G A FUNDC2P2 RNA 0.19 TCGA-DA-A1HV-06 2 89326709 89326709 C T IGKV3-11 Missense_Mutation p.D102N 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 2 96646451 96646451 G A ANKRD36C Nonsense_Mutation p.R226* 0.44 TCGA-DA-A1HV-06 2 96781405 96781405 G A ADRA2B Missense_Mutation p.P162S 0.22 deleterious(0) probably_damaging(0.967) TCGA-DA-A1HV-06 2 96781764 96781764 G A ADRA2B Missense_Mutation p.S42L 0.43 deleterious(0) benign(0.197) TCGA-DA-A1HV-06 2 96970545 96970545 G A SNRNP200 Missense_Mutation p.P36L 0.38 deleterious(0.02) benign(0.118) TCGA-DA-A1HV-06 2 96970546 96970546 G A SNRNP200 Missense_Mutation p.P36S 0.40 tolerated(0.09) benign(0.012) TCGA-DA-A1HV-06 2 98349462 98349462 C T ZAP70 Missense_Mutation p.T227I 0.49 tolerated(0.06) probably_damaging(0.976) TCGA-DA-A1HV-06 3 10346776 10346776 C T SEC13 Missense_Mutation p.D217N 0.50 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HV-06 3 105438911 105438911 G A CBLB Missense_Mutation p.R463W 0.40 deleterious(0) probably_damaging(0.973) TCGA-DA-A1HV-06 3 108229341 108229341 G A MYH15 Missense_Mutation p.L33F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 3 108229345 108229345 G A MYH15 Silent p.A31A 0.25 TCGA-DA-A1HV-06 3 108270022 108270022 G A KIAA1524 Missense_Mutation p.P898S 0.45 tolerated(0.62) benign(0.228) TCGA-DA-A1HV-06 3 108818259 108818259 C T MORC1 Silent p.T123T 0.20 TCGA-DA-A1HV-06 3 109046786 109046786 C T DPPA4 3'UTR 0.43 TCGA-DA-A1HV-06 3 109047901 109047901 G A DPPA4 Silent p.L238L 0.58 TCGA-DA-A1HV-06 3 110852543 110852543 C T PVRL3 Silent p.I377I 0.55 TCGA-DA-A1HV-06 3 111603469 111603469 G A PHLDB2 Missense_Mutation p.G182E 0.53 deleterious(0.02) possibly_damaging(0.887) TCGA-DA-A1HV-06 3 111899473 111899473 C T SLC9C1 Missense_Mutation p.D896N 0.16 tolerated(0.81) benign(0.014) TCGA-DA-A1HV-06 3 111993777 111993777 G A SLC9C1 Nonsense_Mutation p.Q194* 0.21 TCGA-DA-A1HV-06 3 112218146 112218146 G A BTLA Silent p.I20I 0.27 TCGA-DA-A1HV-06 3 112299536 112299536 C T SLC35A5 Missense_Mutation p.S191F 0.18 deleterious(0) probably_damaging(0.954) TCGA-DA-A1HV-06 3 11301227 11301227 C T HRH1 Silent p.F168F 0.44 TCGA-DA-A1HV-06 3 113114680 113114680 C T WDR52 Missense_Mutation p.E603K 0.42 tolerated(0.68) benign(0.444) TCGA-DA-A1HV-06 3 120976149 120976149 G A STXBP5L Missense_Mutation p.G601R 0.44 deleterious(0.02) possibly_damaging(0.641) TCGA-DA-A1HV-06 3 121207049 121207049 G A POLQ Missense_Mutation p.P1577S 0.23 tolerated(0.29) benign(0.007) TCGA-DA-A1HV-06 3 121383332 121383332 G A GOLGB1 Silent p.L3269L 0.31 TCGA-DA-A1HV-06 3 121707229 121707229 C T ILDR1 Silent p.R542R 0.28 TCGA-DA-A1HV-06 3 121707230 121707230 C T ILDR1 Missense_Mutation p.R542K 0.28 tolerated(0.14) benign(0.036) TCGA-DA-A1HV-06 3 123044259 123044259 G A ADCY5 Silent p.S666S 0.22 TCGA-DA-A1HV-06 3 126070768 126070768 G A KLF15 Missense_Mutation p.T333I 0.28 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 3 126751319 126751319 C T PLXNA1 Missense_Mutation p.S1774L 0.23 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 3 128204928 128204928 G A GATA2 Silent p.F171F 0.58 TCGA-DA-A1HV-06 3 129112127 129112127 G A SNORA7B 3'Flank 0.32 TCGA-DA-A1HV-06 3 12977040 12977042 GTG TA IQSEC1 Frame_Shift_Del p.H506* 0.30 TCGA-DA-A1HV-06 3 132415580 132415580 G A NPHP3 Silent p.I722I 0.14 TCGA-DA-A1HV-06 3 134670506 134670506 C T EPHB1 Silent p.T139T 0.46 TCGA-DA-A1HV-06 3 138738801 138738801 G A PRR23B Missense_Mutation p.P235S 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HV-06 3 140397172 140397172 A G TRIM42 Missense_Mutation p.E34G 0.51 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 3 142567294 142567294 G A PCOLCE2 Silent p.V71V 0.30 TCGA-DA-A1HV-06 3 149205420 149205420 G A TM4SF4 Silent p.T93T 0.20 TCGA-DA-A1HV-06 3 150264577 150264577 T G EIF2A 5'UTR 0.34 TCGA-DA-A1HV-06 3 150645694 150645694 C T CLRN1 3'Flank 0.09 TCGA-DA-A1HV-06 3 154017629 154017629 G A DHX36 Missense_Mutation p.S516L 0.55 deleterious(0.04) probably_damaging(0.937) TCGA-DA-A1HV-06 3 154866386 154866386 G A MME Silent p.L515L 0.47 TCGA-DA-A1HV-06 3 155206496 155206496 C T PLCH1 Missense_Mutation p.R819Q 0.33 tolerated(0.12) probably_damaging(1) TCGA-DA-A1HV-06 3 155314033 155314033 C T PLCH1 Missense_Mutation p.E60K 0.24 deleterious(0.03) possibly_damaging(0.611) TCGA-DA-A1HV-06 3 155571095 155571095 A C SLC33A1 Missense_Mutation p.L231W 0.15 deleterious(0) possibly_damaging(0.621) TCGA-DA-A1HV-06 3 156422824 156422824 C T TIPARP Silent p.F626F 0.19 TCGA-DA-A1HV-06 3 156742570 156742570 G A LEKR1 Missense_Mutation p.E409K 0.20 deleterious(0.01) possibly_damaging(0.486) TCGA-DA-A1HV-06 3 159605513 159605513 C T IQCJ-SCHIP1 Missense_Mutation p.S414F 0.21 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 3 164907736 164907736 T A SLITRK3 Missense_Mutation p.I295F 0.19 tolerated(0.72) benign(0.216) TCGA-DA-A1HV-06 3 164907738 164907738 C T SLITRK3 Missense_Mutation p.G294E 0.18 tolerated(0.5) possibly_damaging(0.796) TCGA-DA-A1HV-06 3 167254743 167254743 G A WDR49 Silent p.I271I 0.20 TCGA-DA-A1HV-06 3 169550939 169550939 G A LRRIQ4 Missense_Mutation p.E500K 0.41 tolerated(0.22) benign(0.006) TCGA-DA-A1HV-06 3 169644396 169644396 C T SAMD7 Missense_Mutation p.P116S 0.30 tolerated(0.37) benign(0.065) TCGA-DA-A1HV-06 3 170856009 170856009 G A TNIK Missense_Mutation p.P527S 0.18 tolerated(0.18) possibly_damaging(0.643) TCGA-DA-A1HV-06 3 172224297 172224297 G A TNFSF10 Silent p.A277A 0.50 TCGA-DA-A1HV-06 3 172224405 172224405 G A TNFSF10 Silent p.S241S 0.29 TCGA-DA-A1HV-06 3 17226675 17226675 G A TBC1D5 Missense_Mutation p.S615F 0.49 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HV-06 3 179593207 179593207 G A PEX5L Silent p.T188T 0.16 TCGA-DA-A1HV-06 3 184009212 184009212 C T ECE2 Silent p.F820F 0.39 TCGA-DA-A1HV-06 3 184069834 184069834 G A CLCN2 Silent p.P794P 0.27 TCGA-DA-A1HV-06 3 184069835 184069835 G A CLCN2 Missense_Mutation p.P794L 0.27 deleterious(0.02) benign(0.424) TCGA-DA-A1HV-06 3 185341799 185341799 G A SENP2 Missense_Mutation p.D514N 0.45 tolerated(0.15) possibly_damaging(0.568) TCGA-DA-A1HV-06 3 186272336 186272336 G A TBCCD1 Silent p.A417A 0.26 TCGA-DA-A1HV-06 3 186938850 186938850 C T MASP1 Missense_Mutation p.D628N 0.44 tolerated(1) benign(0.055) TCGA-DA-A1HV-06 3 186953699 186953699 C T MASP1 Missense_Mutation p.E654K 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-DA-A1HV-06 3 187446943 187446943 G A BCL6 Missense_Mutation p.P417L 0.19 tolerated(0.41) possibly_damaging(0.511) TCGA-DA-A1HV-06 3 189526122 189526122 C T TP63 Missense_Mutation p.S129L 0.50 deleterious(0) benign(0.222) TCGA-DA-A1HV-06 3 189608665 189608665 C T TP63 Silent p.S580S 0.40 TCGA-DA-A1HV-06 3 189702340 189702340 G A LEPREL1 Missense_Mutation p.R410W 0.20 deleterious(0) possibly_damaging(0.762) TCGA-DA-A1HV-06 3 192078284 192078284 C T FGF12 Silent p.Q81Q 0.38 TCGA-DA-A1HV-06 3 193023395 193023395 A C ATP13A5 Silent p.P877P 0.10 TCGA-DA-A1HV-06 3 194062013 194062013 C T CPN2 Silent p.Q473Q 0.20 TCGA-DA-A1HV-06 3 195516076 195516076 G A MUC4 Missense_Mutation p.S792F 0.44 unknown(0) TCGA-DA-A1HV-06 3 195794416 195794416 G A TFRC Missense_Mutation p.S338F 0.14 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 3 19924167 19924167 G A EFHB Missense_Mutation p.R735C 0.56 tolerated(0.08) benign(0.066) TCGA-DA-A1HV-06 3 35781005 35781005 C T ARPP21 Missense_Mutation p.S615F 0.61 deleterious(0.03) possibly_damaging(0.495) TCGA-DA-A1HV-06 3 36759579 36759579 C T DCLK3 Missense_Mutation p.D559N 0.63 tolerated(0.13) benign(0.277) TCGA-DA-A1HV-06 3 36879994 36879994 C T TRANK1 Missense_Mutation p.E1752K 0.58 tolerated(0.15) benign(0.023) TCGA-DA-A1HV-06 3 36898613 36898613 C T TRANK1 Missense_Mutation p.G823E 0.60 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 3 36899218 36899218 C T TRANK1 Silent p.G621G 0.65 TCGA-DA-A1HV-06 3 38655513 38655513 C T SCN5A Missense_Mutation p.R219Q 0.67 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 3 38743465 38743465 G A SCN10A Silent p.L1508L 0.61 TCGA-DA-A1HV-06 3 38888655 38888655 C T SCN11A Missense_Mutation p.E1636K 0.66 tolerated(0.08) benign(0.079) TCGA-DA-A1HV-06 3 38889207 38889207 G A SCN11A Nonsense_Mutation p.Q1452* 0.78 TCGA-DA-A1HV-06 3 38912214 38912214 C T SCN11A Missense_Mutation p.D1261N 0.54 deleterious(0.03) benign(0.134) TCGA-DA-A1HV-06 3 39149321 39149321 G A TTC21A 5'UTR 0.68 TCGA-DA-A1HV-06 3 39226013 39226013 G A XIRP1 Missense_Mutation p.P1642S 0.53 tolerated(0.45) benign(0.007) TCGA-DA-A1HV-06 3 40085592 40085592 G A MYRIP Silent p.S54S 0.53 TCGA-DA-A1HV-06 3 46399808 46399808 C T CCR2 Missense_Mutation p.L264F 0.63 tolerated(0.75) benign(0.02) TCGA-DA-A1HV-06 3 47164380 47164380 G A SETD2 Silent p.I582I 0.69 TCGA-DA-A1HV-06 3 49148998 49148998 A C USP19 Missense_Mutation p.M1049R 0.47 tolerated(0.44) benign(0.102) TCGA-DA-A1HV-06 3 52428605 52428605 C T DNAH1 Missense_Mutation p.S3584F 0.62 possibly_damaging(0.617) TCGA-DA-A1HV-06 3 52556830 52556830 G A STAB1 Missense_Mutation p.G2262S 0.59 tolerated(0.05) probably_damaging(0.936) TCGA-DA-A1HV-06 3 55052249 55052249 G A CACNA2D3 Silent p.Q964Q 0.60 TCGA-DA-A1HV-06 3 66436534 66436534 C T LRIG1 Missense_Mutation p.E554K 0.68 tolerated(0.08) benign(0.21) TCGA-DA-A1HV-06 3 68587941 68587941 G A FAM19A1 Missense_Mutation p.M98I 0.71 deleterious(0) probably_damaging(0.954) TCGA-DA-A1HV-06 3 71804275 71804275 C T GPR27 Missense_Mutation p.P359S 0.44 tolerated(0.78) benign(0.051) TCGA-DA-A1HV-06 3 73453318 73453318 G A PDZRN3 Missense_Mutation p.P383S 0.67 tolerated(0.08) benign(0.023) TCGA-DA-A1HV-06 3 74315713 74315713 C T CNTN3 Missense_Mutation p.D969N 0.64 tolerated(0.12) probably_damaging(0.921) TCGA-DA-A1HV-06 3 74315714 74315714 C T CNTN3 Silent p.E968E 0.66 TCGA-DA-A1HV-06 3 74347205 74347205 G A CNTN3 Silent p.I768I 0.71 TCGA-DA-A1HV-06 3 74349059 74349059 C T CNTN3 Missense_Mutation p.G709E 0.62 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 3 7620396 7620396 G A GRM7 Silent p.G601G 0.13 TCGA-DA-A1HV-06 3 89448669 89448669 G A EPHA3 Intron 0.33 TCGA-DA-A1HV-06 3 97596131 97596131 T G CRYBG3 Silent p.A83A 0.32 TCGA-DA-A1HV-06 3 97888212 97888212 C T OR5H15 Silent p.F223F 0.21 TCGA-DA-A1HV-06 3 98002658 98002658 G A OR5H2 Missense_Mutation p.M309I 0.77 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 4 100237184 100237184 G A ADH1B Silent p.T146T 0.41 TCGA-DA-A1HV-06 4 100268973 100268973 C T ADH1C Missense_Mutation p.E17K 0.28 benign(0.23) TCGA-DA-A1HV-06 4 100534212 100534212 G A MTTP Missense_Mutation p.S711N 0.35 deleterious(0.04) benign(0.424) TCGA-DA-A1HV-06 4 104065637 104065637 C T CENPE Missense_Mutation p.E1666K 0.39 possibly_damaging(0.682) TCGA-DA-A1HV-06 4 104640463 104640463 G A TACR3 Missense_Mutation p.L124F 0.31 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HV-06 4 106157143 106157143 C T TET2 Missense_Mutation p.H682Y 0.31 tolerated(0.1) benign(0.013) TCGA-DA-A1HV-06 4 109784531 109784531 C T COL25A1 Missense_Mutation p.E366K 0.36 tolerated(0.15) possibly_damaging(0.634) TCGA-DA-A1HV-06 4 110791480 110791480 G A LRIT3 Silent p.K525K 0.44 TCGA-DA-A1HV-06 4 111539353 111539353 G A PITX2 Silent p.F301F 0.22 TCGA-DA-A1HV-06 4 115997728 115997728 C T NDST4 Silent p.V155V 0.30 TCGA-DA-A1HV-06 4 120241869 120241869 C T FABP2 Missense_Mutation p.G66S 0.44 deleterious(0) probably_damaging(0.984) TCGA-DA-A1HV-06 4 122728768 122728768 T A EXOSC9 Missense_Mutation p.F199Y 0.22 tolerated(0.28) possibly_damaging(0.764) TCGA-DA-A1HV-06 4 123140648 123140648 C T KIAA1109 Missense_Mutation p.H801Y 0.45 probably_damaging(0.989) TCGA-DA-A1HV-06 4 129867244 129867244 A T SCLT1 Missense_Mutation p.F453I 0.31 deleterious(0.03) benign(0.047) TCGA-DA-A1HV-06 4 1389383 1389383 C T CRIPAK Missense_Mutation p.P362S 0.36 tolerated(0.45) possibly_damaging(0.803) TCGA-DA-A1HV-06 4 139100404 139100404 C T SLC7A11 Missense_Mutation p.D471N 0.40 tolerated(0.52) benign(0.012) TCGA-DA-A1HV-06 4 140811492 140811492 G A MAML3 Silent p.F366F 0.39 TCGA-DA-A1HV-06 4 141590794 141590794 C T TBC1D9 Silent p.P477P 0.38 TCGA-DA-A1HV-06 4 142649103 142649103 T A IL15 Missense_Mutation p.I69N 0.31 deleterious(0) possibly_damaging(0.851) TCGA-DA-A1HV-06 4 147824788 147824788 C T TTC29 Missense_Mutation p.R165Q 0.45 tolerated(0.58) benign(0.072) TCGA-DA-A1HV-06 4 152626406 152626406 C T PET112 Missense_Mutation p.R298K 0.25 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 4 154265847 154265847 C T MND1 5'UTR 0.31 TCGA-DA-A1HV-06 4 155508735 155508735 C T FGA Missense_Mutation p.E147K 0.31 tolerated(0.07) benign(0.393) TCGA-DA-A1HV-06 4 155719008 155719008 G A RBM46 Missense_Mutation p.G66E 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 4 157689054 157689054 C T PDGFC Silent p.K264K 0.26 TCGA-DA-A1HV-06 4 158057641 158057641 C T GLRB Silent p.F106F 0.30 TCGA-DA-A1HV-06 4 158281184 158281184 C A GRIA2 Missense_Mutation p.S727Y 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 4 158281185 158281185 C T GRIA2 Silent p.S727S 0.37 TCGA-DA-A1HV-06 4 158284117 158284117 C T GRIA2 Missense_Mutation p.S858F 0.31 deleterious_low_confidence(0.01) benign(0) TCGA-DA-A1HV-06 4 166795119 166795119 C T TLL1 Silent p.F21F 0.37 TCGA-DA-A1HV-06 4 169196631 169196631 C T DDX60 Silent p.V723V 0.62 TCGA-DA-A1HV-06 4 175898159 175898159 G A ADAM29 Missense_Mutation p.E495K 0.38 deleterious(0.02) benign(0.206) TCGA-DA-A1HV-06 4 177067288 177067288 C T WDR17 Missense_Mutation p.L582F 0.37 deleterious(0.01) benign(0.077) TCGA-DA-A1HV-06 4 183659578 183659578 C T TENM3 Missense_Mutation p.S1087L 0.42 deleterious(0.01) possibly_damaging(0.602) TCGA-DA-A1HV-06 4 184930614 184930614 G A STOX2 Missense_Mutation p.S208N 0.37 tolerated(0.23) benign(0.131) TCGA-DA-A1HV-06 4 185038182 185038182 C T ENPP6 Missense_Mutation p.G228S 0.31 tolerated(0.11) benign(0.328) TCGA-DA-A1HV-06 4 187542210 187542210 G A FAT1 Missense_Mutation p.H1844Y 0.32 benign(0.005) TCGA-DA-A1HV-06 4 25673286 25673286 G A SLC34A2 Missense_Mutation p.D331N 0.38 tolerated(0.34) benign(0.014) TCGA-DA-A1HV-06 4 26491823 26491823 C T CCKAR Missense_Mutation p.E23K 0.23 tolerated(0.44) benign(0.01) TCGA-DA-A1HV-06 4 30725411 30725411 C T PCDH7 Silent p.F789F 0.19 TCGA-DA-A1HV-06 4 3449220 3449220 C T HGFAC Missense_Mutation p.P453S 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 4 38829514 38829514 C T TLR6 Silent p.G527G 0.30 TCGA-DA-A1HV-06 4 437781 437781 G A ZNF721 Missense_Mutation p.H159Y 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-DA-A1HV-06 4 44450305 44450305 G A KCTD8 Missense_Mutation p.P79L 0.45 tolerated(0.11) benign(0.049) TCGA-DA-A1HV-06 4 46043230 46043230 C T GABRG1 Missense_Mutation p.M391I 0.30 tolerated(0.51) benign(0.002) TCGA-DA-A1HV-06 4 47938625 47938625 C T CNGA1 Missense_Mutation p.R698Q 0.29 tolerated(0.35) benign(0.022) TCGA-DA-A1HV-06 4 48564928 48564928 T G FRYL Missense_Mutation p.E1225A 0.40 deleterious(0.05) benign(0.062) TCGA-DA-A1HV-06 4 52945915 52945915 G A SPATA18 Silent p.V395V 0.35 TCGA-DA-A1HV-06 4 54327130 54327130 C T LNX1 Missense_Mutation p.E711K 0.39 deleterious(0.01) probably_damaging(0.923) TCGA-DA-A1HV-06 4 55139809 55139809 C T PDGFRA Silent p.F490F 0.37 TCGA-DA-A1HV-06 4 5961349 5961349 G A C4orf50 Missense_Mutation p.P669L 0.26 tolerated(0.08) benign(0.005) TCGA-DA-A1HV-06 4 6349705 6349705 C T PPP2R2C Missense_Mutation p.D220N 0.48 deleterious(0.05) benign(0.059) TCGA-DA-A1HV-06 4 65145874 65145874 C T TECRL Nonsense_Mutation p.W336* 0.30 TCGA-DA-A1HV-06 4 65147277 65147277 C T TECRL Missense_Mutation p.G278E 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 4 69343084 69343084 C T TMPRSS11E Intron 0.29 TCGA-DA-A1HV-06 4 69434189 69434189 C T UGT2B17 Nonsense_Mutation p.W5* 0.34 TCGA-DA-A1HV-06 4 69682129 69682129 C T UGT2B10 Missense_Mutation p.S131L 0.50 tolerated(0.93) benign(0.004) TCGA-DA-A1HV-06 4 70146905 70146905 G A UGT2B28 Missense_Mutation p.M229I 0.68 tolerated(0.41) benign(0.008) TCGA-DA-A1HV-06 4 70346577 70346577 C T UGT2B4 Silent p.V454V 0.29 TCGA-DA-A1HV-06 4 70361510 70361510 C T UGT2B4 Missense_Mutation p.G24R 0.35 deleterious(0) probably_damaging(0.986) TCGA-DA-A1HV-06 4 70599889 70599889 C T SULT1B1 Missense_Mutation p.E157K 0.35 tolerated(0.05) benign(0.006) TCGA-DA-A1HV-06 4 71465260 71465260 G A AMBN Missense_Mutation p.R64K 0.31 tolerated(0.06) benign(0.07) TCGA-DA-A1HV-06 4 71471911 71471911 G A AMBN Missense_Mutation p.E270K 0.31 deleterious(0.02) benign(0.143) TCGA-DA-A1HV-06 4 71500187 71500187 C T ENAM Missense_Mutation p.P125S 0.30 deleterious(0.04) benign(0.154) TCGA-DA-A1HV-06 4 71500188 71500188 C T ENAM Missense_Mutation p.P125L 0.28 deleterious(0.02) benign(0.013) TCGA-DA-A1HV-06 4 73013556 73013556 C T NPFFR2 3'UTR 0.44 TCGA-DA-A1HV-06 4 77660890 77660890 G A SHROOM3 Missense_Mutation p.G522R 0.34 tolerated(0.38) benign(0.391) TCGA-DA-A1HV-06 4 81866048 81866048 T A C4orf22 Silent p.L204L 0.45 TCGA-DA-A1HV-06 4 8304194 8304194 G A HTRA3 Nonsense_Mutation p.W352* 0.40 TCGA-DA-A1HV-06 4 88533702 88533702 G A DSPP Missense_Mutation p.D122N 0.44 probably_damaging(1) TCGA-DA-A1HV-06 4 90816651 90816651 C T MMRN1 Nonsense_Mutation p.R177* 0.16 TCGA-DA-A1HV-06 4 94031949 94031949 G A GRID2 Missense_Mutation p.D194N 0.38 deleterious(0.03) probably_damaging(0.985) TCGA-DA-A1HV-06 4 96091445 96091445 C T UNC5C Silent p.A830A 0.30 TCGA-DA-A1HV-06 4 99064228 99064228 G A STPG2 Missense_Mutation p.S25F 0.40 deleterious(0) probably_damaging(0.959) TCGA-DA-A1HV-06 5 102432395 102432395 G A GIN1 Missense_Mutation p.R382C 0.58 deleterious(0.02) possibly_damaging(0.841) TCGA-DA-A1HV-06 5 135272446 135272446 C T FBXL21 5'Flank 0.62 TCGA-DA-A1HV-06 5 135282990 135282990 A T LECT2 3'UTR 0.67 TCGA-DA-A1HV-06 5 13751282 13751282 C T DNAH5 Missense_Mutation p.E3706K 0.59 possibly_damaging(0.621) TCGA-DA-A1HV-06 5 137654975 137654975 C T CDC25C Missense_Mutation p.G183E 0.65 tolerated(0.86) benign(0.017) TCGA-DA-A1HV-06 5 13793757 13793757 G A DNAH5 Silent p.I2697I 0.58 TCGA-DA-A1HV-06 5 13916470 13916470 G A DNAH5 Missense_Mutation p.S395F 0.65 possibly_damaging(0.788) TCGA-DA-A1HV-06 5 139193016 139193016 G A PSD2 Missense_Mutation p.S165N 0.68 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A1HV-06 5 13931261 13931261 C T DNAH5 Silent p.L50L 0.70 TCGA-DA-A1HV-06 5 140222098 140222098 G A PCDHA8 Missense_Mutation p.V398M 0.66 deleterious_low_confidence(0.02) benign(0.22) TCGA-DA-A1HV-06 5 140558279 140558279 C T PCDHB8 Missense_Mutation p.P222S 0.26 deleterious_low_confidence(0.03) benign(0.017) TCGA-DA-A1HV-06 5 140564312 140564312 G A PCDHB16 Silent p.S726S 0.66 TCGA-DA-A1HV-06 5 140711920 140711920 G A PCDHGA1 Missense_Mutation p.D557N 0.62 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-DA-A1HV-06 5 140773266 140773266 G A PCDHGA8 Missense_Mutation p.E296K 0.76 tolerated_low_confidence(0.11) benign(0.028) TCGA-DA-A1HV-06 5 141059915 141059915 A G ARAP3 Silent p.L47L 0.65 TCGA-DA-A1HV-06 5 141694664 141694664 G A SPRY4 Missense_Mutation p.P27S 0.54 tolerated(0.12) benign(0.156) TCGA-DA-A1HV-06 5 141974978 141974978 C T FGF1 Silent p.K115K 0.67 TCGA-DA-A1HV-06 5 148408258 148408258 G A SH3TC2 Missense_Mutation p.P387S 0.64 tolerated(0.39) benign(0.039) TCGA-DA-A1HV-06 5 148695858 148695858 C T AFAP1L1 Missense_Mutation p.P420L 0.57 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1HV-06 5 148699251 148699251 C T AFAP1L1 Missense_Mutation p.T529I 0.67 deleterious(0.03) possibly_damaging(0.613) TCGA-DA-A1HV-06 5 161128527 161128527 G A GABRA6 Silent p.L370L 0.72 TCGA-DA-A1HV-06 5 168114030 168114030 C T SLIT3 Missense_Mutation p.V1090M 0.68 tolerated(0.07) benign(0.183) TCGA-DA-A1HV-06 5 169535641 169535641 G A FOXI1 3'UTR 0.71 TCGA-DA-A1HV-06 5 176004637 176004637 G A CDHR2 Splice_Site p.X451_splice 0.55 TCGA-DA-A1HV-06 5 176011632 176011632 G A CDHR2 Missense_Mutation p.D784N 0.65 tolerated(0.28) possibly_damaging(0.875) TCGA-DA-A1HV-06 5 176522568 176522568 G A FGFR4 Silent p.K555K 0.42 TCGA-DA-A1HV-06 5 177059160 177059160 G A RP11-1277A3.2 Intron 0.44 TCGA-DA-A1HV-06 5 178413539 178413539 G A GRM6 Silent p.R572R 0.53 TCGA-DA-A1HV-06 5 178505774 178505774 C T ZNF354C Missense_Mutation p.S114F 0.74 tolerated(0.71) possibly_damaging(0.467) TCGA-DA-A1HV-06 5 179302141 179302141 G A TBC1D9B Silent p.F649F 0.66 TCGA-DA-A1HV-06 5 195035 195035 G A LRRC14B Missense_Mutation p.G371D 0.56 tolerated(0.58) benign(0.009) TCGA-DA-A1HV-06 5 19571825 19571825 G A CDH18 Silent p.I372I 0.36 TCGA-DA-A1HV-06 5 205335 205335 G A CCDC127 3'UTR 0.19 TCGA-DA-A1HV-06 5 21842281 21842281 C T CDH12 Missense_Mutation p.R268Q 0.59 deleterious(0.02) possibly_damaging(0.693) TCGA-DA-A1HV-06 5 22143056 22143056 G A CDH12 Intron 0.56 TCGA-DA-A1HV-06 5 23522775 23522775 C T PRDM9 Silent p.P221P 0.46 TCGA-DA-A1HV-06 5 23524611 23524611 G A PRDM9 Nonsense_Mutation p.W373* 0.26 TCGA-DA-A1HV-06 5 23526594 23526594 G C PRDM9 Missense_Mutation p.R466T 0.14 tolerated(0.05) possibly_damaging(0.546) TCGA-DA-A1HV-06 5 23527654 23527654 C T PRDM9 Silent p.L819L 0.52 TCGA-DA-A1HV-06 5 23527765 23527765 G A PRDM9 Silent p.G856G 0.21 TCGA-DA-A1HV-06 5 24487711 24487711 G A CDH10 3'UTR 0.58 TCGA-DA-A1HV-06 5 24509751 24509751 G A CDH10 Missense_Mutation p.H394Y 0.41 tolerated(0.83) probably_damaging(0.954) TCGA-DA-A1HV-06 5 33535075 33535075 C T ADAMTS12 Missense_Mutation p.G1490D 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 5 34944982 34944982 C T DNAJC21 Missense_Mutation p.H332Y 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 5 35771819 35771819 G A SPEF2 Missense_Mutation p.E1304K 0.30 tolerated(0.36) probably_damaging(0.989) TCGA-DA-A1HV-06 5 35814573 35814573 A T SPEF2 Missense_Mutation p.K1796I 0.49 deleterious(0) possibly_damaging(0.599) TCGA-DA-A1HV-06 5 35875648 35875648 C T IL7R Missense_Mutation p.H279Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 5 35876102 35876102 C T IL7R Silent p.F298F 0.29 TCGA-DA-A1HV-06 5 35968231 35968231 A C UGT3A1 Missense_Mutation p.I67M 0.39 tolerated(0.11) benign(0.027) TCGA-DA-A1HV-06 5 37725136 37725136 T A WDR70 Silent p.P566P 0.34 TCGA-DA-A1HV-06 5 37725138 37725138 C T WDR70 Missense_Mutation p.P567L 0.34 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 5 38925305 38925305 G A OSMR Splice_Site p.X682_splice 0.36 TCGA-DA-A1HV-06 5 38975651 38975651 G A RICTOR Nonsense_Mutation p.R293* 0.33 TCGA-DA-A1HV-06 5 40959592 40959592 C T C7 Missense_Mutation p.P511S 0.32 tolerated(0.83) benign(0.016) TCGA-DA-A1HV-06 5 41008722 41008722 G A MROH2B Silent p.I1198I 0.35 TCGA-DA-A1HV-06 5 41038922 41038922 G A MROH2B Silent p.L710L 0.41 TCGA-DA-A1HV-06 5 43506360 43506360 T A C5orf34 Missense_Mutation p.H141L 0.36 tolerated(0.14) benign(0.005) TCGA-DA-A1HV-06 5 43609398 43609398 G A NNT Missense_Mutation p.R34Q 0.51 deleterious(0.04) possibly_damaging(0.572) TCGA-DA-A1HV-06 5 45262159 45262159 G A HCN1 Missense_Mutation p.S846L 0.34 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-DA-A1HV-06 5 45262779 45262779 G T HCN1 Silent p.I639I 0.40 TCGA-DA-A1HV-06 5 56174881 56174881 C T MAP3K1 Silent p.L680L 0.63 TCGA-DA-A1HV-06 5 58287737 58287737 C A PDE4D Missense_Mutation p.L370F 0.62 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-DA-A1HV-06 5 89938704 89938704 G A GPR98 Missense_Mutation p.R800Q 0.71 possibly_damaging(0.602) TCGA-DA-A1HV-06 5 90074720 90074720 C T GPR98 Silent p.G4296G 0.64 TCGA-DA-A1HV-06 6 10398626 10398626 G A TFAP2A 3'UTR 0.30 TCGA-DA-A1HV-06 6 106978146 106978146 T C AIM1 Silent p.F1150F 0.52 TCGA-DA-A1HV-06 6 110620283 110620283 G A METTL24 Missense_Mutation p.P210S 0.79 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 111303331 111303331 G C RPF2 Missense_Mutation p.V8L 0.33 tolerated(0.26) benign(0.003) TCGA-DA-A1HV-06 6 117113321 117113321 C T GPRC6A Missense_Mutation p.R922K 0.59 deleterious_low_confidence(0.04) benign(0.02) TCGA-DA-A1HV-06 6 117201826 117201826 G A RFX6 Missense_Mutation p.G167E 0.69 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 117677936 117677936 C T ROS1 Missense_Mutation p.E1333K 0.54 tolerated(0.06) benign(0.043) TCGA-DA-A1HV-06 6 11778902 11778902 C T ADTRP Missense_Mutation p.E31K 0.28 tolerated(0.67) benign(0.003) TCGA-DA-A1HV-06 6 125112496 125112496 C T NKAIN2 Silent p.F162F 0.61 TCGA-DA-A1HV-06 6 125379091 125379091 C T RNF217 Nonsense_Mutation p.Q82* 0.76 TCGA-DA-A1HV-06 6 127768774 127768774 T A KIAA0408 Missense_Mutation p.E230D 0.65 tolerated(0.05) benign(0.059) TCGA-DA-A1HV-06 6 128150684 128150684 G A THEMIS Missense_Mutation p.P216S 0.48 deleterious(0) probably_damaging(0.963) TCGA-DA-A1HV-06 6 129813560 129813560 G A LAMA2 Missense_Mutation p.E2726K 0.61 tolerated(0.1) benign(0.009) TCGA-DA-A1HV-06 6 130404819 130404819 C T L3MBTL3 Missense_Mutation p.S459F 0.52 deleterious(0) benign(0.231) TCGA-DA-A1HV-06 6 131937093 131937093 G A MED23 Missense_Mutation p.P277L 0.76 tolerated(0.07) probably_damaging(0.997) TCGA-DA-A1HV-06 6 133070844 133070844 C T VNN2 Missense_Mutation p.G454E 0.53 tolerated(0.4) benign(0.263) TCGA-DA-A1HV-06 6 134349724 134349724 G A SLC2A12 Silent p.S413S 0.63 TCGA-DA-A1HV-06 6 136500196 136500196 G A PDE7B Missense_Mutation p.E289K 0.60 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 6 136599243 136599243 G A BCLAF1 Missense_Mutation p.S259F 0.10 deleterious(0) benign(0.261) TCGA-DA-A1HV-06 6 144263115 144263115 C T PLAGL1 Missense_Mutation p.E280K 0.64 tolerated(0.55) benign(0.141) TCGA-DA-A1HV-06 6 144843240 144843240 C T UTRN Missense_Mutation p.S1889L 0.68 tolerated(0.36) benign(0.001) TCGA-DA-A1HV-06 6 149691193 149691193 C T TAB2 Silent p.F20F 0.50 TCGA-DA-A1HV-06 6 149783102 149783102 C T ZC3H12D Missense_Mutation p.G104R 0.73 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 151859284 151859284 C A CCDC170 Silent p.L97L 0.59 TCGA-DA-A1HV-06 6 152725357 152725357 T C SYNE1 Silent p.P2272P 0.54 TCGA-DA-A1HV-06 6 15497234 15497234 C T JARID2 Missense_Mutation p.P593L 0.37 deleterious(0.03) benign(0.002) TCGA-DA-A1HV-06 6 155458691 155458691 G A TIAM2 Silent p.R525R 0.68 TCGA-DA-A1HV-06 6 158318009 158318009 C T SNX9 Missense_Mutation p.P151S 0.45 tolerated(0.05) probably_damaging(0.999) TCGA-DA-A1HV-06 6 158924506 158924506 C T TULP4 Missense_Mutation p.P1271S 0.62 deleterious_low_confidence(0.03) benign(0.16) TCGA-DA-A1HV-06 6 158924507 158924507 C T TULP4 Missense_Mutation p.P1271L 0.62 deleterious_low_confidence(0) benign(0.305) TCGA-DA-A1HV-06 6 159262913 159262913 C T OSTCP1 RNA 0.68 TCGA-DA-A1HV-06 6 159654087 159654087 C T FNDC1 Missense_Mutation p.S848F 0.75 deleterious_low_confidence(0.03) unknown(0) TCGA-DA-A1HV-06 6 165715408 165715408 G A C6orf118 Nonsense_Mutation p.Q135* 0.62 TCGA-DA-A1HV-06 6 165715409 165715409 G A C6orf118 Silent p.P134P 0.65 TCGA-DA-A1HV-06 6 168461452 168461452 C T FRMD1 Missense_Mutation p.G444D 0.76 tolerated(0.39) benign(0.004) TCGA-DA-A1HV-06 6 168468049 168468049 C T FRMD1 Missense_Mutation p.E128K 0.62 tolerated(1) benign(0.001) TCGA-DA-A1HV-06 6 24278393 24278393 G A DCDC2 Missense_Mutation p.S269L 0.27 deleterious(0.04) benign(0.004) TCGA-DA-A1HV-06 6 24582553 24582553 C T KIAA0319 Nonsense_Mutation p.W372* 0.44 TCGA-DA-A1HV-06 6 25670232 25670232 C T SCGN Silent p.F133F 0.25 TCGA-DA-A1HV-06 6 25762227 25762227 G A SLC17A4 Missense_Mutation p.D13N 0.25 tolerated(0.45) benign(0.002) TCGA-DA-A1HV-06 6 25773765 25773765 C T SLC17A4 Missense_Mutation p.P284S 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 26104319 26104319 C T HIST1H4C Silent p.S48S 0.26 TCGA-DA-A1HV-06 6 27215814 27215814 G A PRSS16 Missense_Mutation p.R75Q 0.60 tolerated(0.14) benign(0.026) TCGA-DA-A1HV-06 6 28327466 28327466 C T ZKSCAN3 Missense_Mutation p.P35S 0.26 tolerated(0.58) benign(0.043) TCGA-DA-A1HV-06 6 28474202 28474202 C T GPX6 Silent p.L82L 0.28 TCGA-DA-A1HV-06 6 28539785 28539785 C T SCAND3 Missense_Mutation p.S1294N 0.27 tolerated_low_confidence(0.31) probably_damaging(0.95) TCGA-DA-A1HV-06 6 28543685 28543685 T A SCAND3 Missense_Mutation p.E266V 0.22 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-DA-A1HV-06 6 28547076 28547076 G A SCAND3 Missense_Mutation p.P181S 0.24 deleterious_low_confidence(0) benign(0.034) TCGA-DA-A1HV-06 6 28963143 28963143 G A ZNF311 Nonsense_Mutation p.R546* 0.39 TCGA-DA-A1HV-06 6 28966604 28966604 G A ZNF311 Missense_Mutation p.P108S 0.30 tolerated(0.8) benign(0.07) TCGA-DA-A1HV-06 6 29012445 29012445 C T OR2W1 Missense_Mutation p.G170R 0.27 deleterious(0.02) benign(0.29) TCGA-DA-A1HV-06 6 29080401 29080401 G A OR2J3 Missense_Mutation p.G245E 0.32 deleterious(0) benign(0.222) TCGA-DA-A1HV-06 6 29323269 29323269 C T OR5V1 Missense_Mutation p.R235Q 0.28 tolerated(0.5) benign(0.005) TCGA-DA-A1HV-06 6 29640996 29640996 G A ZFP57 Missense_Mutation p.P298S 0.24 tolerated(0.17) possibly_damaging(0.547) TCGA-DA-A1HV-06 6 30136161 30136161 C T TRIM15 Silent p.L188L 0.32 TCGA-DA-A1HV-06 6 30558544 30558544 C T ABCF1 3'UTR 0.45 TCGA-DA-A1HV-06 6 30691565 30691565 C T TUBB Silent p.F242F 0.29 TCGA-DA-A1HV-06 6 31122388 31122388 C T CCHCR1 Missense_Mutation p.R229Q 0.50 tolerated(0.48) benign(0.049) TCGA-DA-A1HV-06 6 31237825 31237825 G A HLA-C Silent p.I311I 0.38 TCGA-DA-A1HV-06 6 31237827 31237827 T A HLA-C Missense_Mutation p.I311F 0.40 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DA-A1HV-06 6 31498200 31498200 G A DDX39B 3'UTR 0.12 TCGA-DA-A1HV-06 6 31541203 31541203 G A LTA Silent p.G117G 0.27 TCGA-DA-A1HV-06 6 31655432 31655432 G A ABHD16A Silent p.F511F 0.25 TCGA-DA-A1HV-06 6 31711783 31711783 C T MSH5 Missense_Mutation p.P173L 0.28 deleterious(0) possibly_damaging(0.906) TCGA-DA-A1HV-06 6 31774731 31774731 G A LSM2 5'UTR 0.44 TCGA-DA-A1HV-06 6 31779021 31779021 G A HSPA1L Silent p.F243F 0.27 TCGA-DA-A1HV-06 6 31895820 31895820 C G CFB Missense_Mutation p.S45R 0.24 tolerated(0.07) benign(0.032) TCGA-DA-A1HV-06 6 31896685 31896685 G A CFB Intron 0.25 TCGA-DA-A1HV-06 6 31901724 31901724 C T CFB Missense_Mutation p.P171S 0.26 tolerated_low_confidence(0.41) possibly_damaging(0.548) TCGA-DA-A1HV-06 6 31914153 31914153 T G CFB Missense_Mutation p.V525G 0.20 tolerated(0.63) benign(0.015) TCGA-DA-A1HV-06 6 31940082 31940082 G A STK19 Missense_Mutation p.G75E 0.26 tolerated_low_confidence(0.54) benign(0) TCGA-DA-A1HV-06 6 31962466 31962466 C T C4A Silent p.S928S 0.12 TCGA-DA-A1HV-06 6 32024387 32024387 G A TNXB Missense_Mutation p.P2707S 0.22 probably_damaging(0.994) TCGA-DA-A1HV-06 6 32038123 32038123 G A TNXB Missense_Mutation p.P1687S 0.29 benign(0.028) TCGA-DA-A1HV-06 6 32159543 32159543 G A GPSM3 Silent p.A96A 0.22 TCGA-DA-A1HV-06 6 32485433 32485433 G A HLA-DRB5 3'UTR 0.17 TCGA-DA-A1HV-06 6 33146700 33146700 C T COL11A2 Silent p.V468V 0.15 TCGA-DA-A1HV-06 6 33287363 33287363 G T DAXX Silent p.T578T 0.26 TCGA-DA-A1HV-06 6 34004153 34004153 G A GRM4 Silent p.I578I 0.28 TCGA-DA-A1HV-06 6 34511830 34511830 C T SPDEF Missense_Mutation p.E135K 0.35 tolerated(0.09) possibly_damaging(0.625) TCGA-DA-A1HV-06 6 34839359 34839359 A T UHRF1BP1 Splice_Site p.X1328_splice 0.28 TCGA-DA-A1HV-06 6 36336837 36336837 G A ETV7 Silent p.L226L 0.25 TCGA-DA-A1HV-06 6 36927080 36927080 G A PI16 Missense_Mutation p.E111K 0.35 tolerated(0.26) benign(0.306) TCGA-DA-A1HV-06 6 37349114 37349114 C T RNF8 Silent p.L475L 0.24 TCGA-DA-A1HV-06 6 38743720 38743720 G C DNAH8 Missense_Mutation p.G435A 0.12 benign(0.002) TCGA-DA-A1HV-06 6 38773361 38773361 G A DNAH8 Missense_Mutation p.E830K 0.30 benign(0.005) TCGA-DA-A1HV-06 6 38980372 38980372 G A DNAH8 Missense_Mutation p.R4341K 0.26 possibly_damaging(0.67) TCGA-DA-A1HV-06 6 39024227 39024227 C T GLP1R Nonsense_Mutation p.Q45* 0.35 TCGA-DA-A1HV-06 6 40400092 40400092 C T LRFN2 Missense_Mutation p.R254Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-DA-A1HV-06 6 4057355 4057355 C T PRPF4B Silent p.F889F 0.14 TCGA-DA-A1HV-06 6 42044897 42044897 G A TAF8 Silent p.S280S 0.52 TCGA-DA-A1HV-06 6 42890985 42890985 C T PTCRA Silent p.S93S 0.26 TCGA-DA-A1HV-06 6 42930850 42930850 G A GNMT Silent p.A164A 0.26 TCGA-DA-A1HV-06 6 43013404 43013404 G A CUL7 Missense_Mutation p.S1012F 0.50 deleterious(0.04) benign(0.094) TCGA-DA-A1HV-06 6 43021998 43021998 A G MRPL2 3'UTR 0.29 TCGA-DA-A1HV-06 6 43021999 43021999 G A MRPL2 3'UTR 0.28 TCGA-DA-A1HV-06 6 44197193 44197193 C T SLC29A1 Silent p.F32F 0.22 TCGA-DA-A1HV-06 6 44268272 44268272 G A AARS2 3'UTR 0.19 TCGA-DA-A1HV-06 6 46111256 46111256 C T ENPP4 Missense_Mutation p.S414L 0.21 tolerated(0.1) benign(0.002) TCGA-DA-A1HV-06 6 46563780 46563780 G A CYP39A1 Missense_Mutation p.R337C 0.51 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 6 46975030 46975030 C T GPR110 Missense_Mutation p.G831E 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 49660530 49660530 C T CRISP2 Missense_Mutation p.E230K 0.37 tolerated(0.4) benign(0.05) TCGA-DA-A1HV-06 6 50011320 50011320 G A DEFB112 Nonsense_Mutation p.Q104* 0.33 TCGA-DA-A1HV-06 6 51889493 51889493 C T PKHD1 Silent p.V1705V 0.19 TCGA-DA-A1HV-06 6 52101600 52101600 C T IL17F 3'UTR 0.26 TCGA-DA-A1HV-06 6 52550875 52550875 C T TMEM14A 3'UTR 0.57 TCGA-DA-A1HV-06 6 52656671 52656671 C T GSTA1 Silent p.K218K 0.22 TCGA-DA-A1HV-06 6 53764569 53764569 C T LRRC1 Silent p.L223L 0.22 TCGA-DA-A1HV-06 6 54173598 54173598 G A TINAG Missense_Mutation p.D84N 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 6 54805639 54805639 T C FAM83B Silent p.L624L 0.32 TCGA-DA-A1HV-06 6 55142322 55142322 G A HCRTR2 Missense_Mutation p.A303T 0.32 deleterious(0) probably_damaging(0.966) TCGA-DA-A1HV-06 6 56480379 56480379 A G DST Intron 0.31 TCGA-DA-A1HV-06 6 6007079 6007079 C T NRN1 5'UTR 0.20 TCGA-DA-A1HV-06 6 62688069 62688069 C T KHDRBS2 Missense_Mutation p.D129N 0.38 tolerated(0.37) benign(0.011) TCGA-DA-A1HV-06 6 66205080 66205080 G A EYS Missense_Mutation p.P75L 0.31 deleterious_low_confidence(0.01) benign(0.199) TCGA-DA-A1HV-06 6 69349060 69349060 C T BAI3 Nonsense_Mutation p.Q165* 0.36 TCGA-DA-A1HV-06 6 70064186 70064186 C T BAI3 Missense_Mutation p.S1174L 0.41 deleterious(0.04) benign(0.001) TCGA-DA-A1HV-06 6 70744136 70744136 G A COL19A1 Splice_Site p.X361_splice 0.38 TCGA-DA-A1HV-06 6 72596824 72596824 G A RIMS1 Missense_Mutation p.R33K 0.53 deleterious(0) probably_damaging(0.933) TCGA-DA-A1HV-06 6 73919676 73919676 C T RP11-257K9.8 3'UTR 0.46 TCGA-DA-A1HV-06 6 7579988 7579988 G A DSP Missense_Mutation p.E1189K 0.19 probably_damaging(0.991) TCGA-DA-A1HV-06 6 76022922 76022922 T A FILIP1 Missense_Mutation p.R876W 0.37 deleterious(0) possibly_damaging(0.888) TCGA-DA-A1HV-06 6 76023074 76023074 C T FILIP1 Missense_Mutation p.R825Q 0.34 tolerated(0.13) benign(0.072) TCGA-DA-A1HV-06 6 76023710 76023710 C T FILIP1 Missense_Mutation p.G613E 0.37 tolerated(0.16) benign(0.021) TCGA-DA-A1HV-06 6 7605713 7605713 C T SNRNP48 Missense_Mutation p.A267V 0.28 deleterious(0.05) benign(0.004) TCGA-DA-A1HV-06 6 76657128 76657128 G A IMPG1 Silent p.L649L 0.26 TCGA-DA-A1HV-06 6 82924513 82924513 G A IBTK Silent p.S545S 0.60 TCGA-DA-A1HV-06 6 96651183 96651183 A T FUT9 Missense_Mutation p.K51I 0.70 deleterious(0.05) benign(0.142) TCGA-DA-A1HV-06 7 100086917 100086917 C T NYAP1 Missense_Mutation p.L525F 0.44 tolerated(0.2) probably_damaging(0.988) TCGA-DA-A1HV-06 7 100187820 100187820 C T FBXO24 Silent p.L92L 0.47 TCGA-DA-A1HV-06 7 100685492 100685492 C T MUC17 Missense_Mutation p.P3599S 0.17 benign(0) TCGA-DA-A1HV-06 7 100685823 100685823 C T MUC17 Missense_Mutation p.S3709F 0.18 benign(0.083) TCGA-DA-A1HV-06 7 102036929 102036929 C T PRKRIP1 Missense_Mutation p.P24L 0.47 tolerated(0.14) possibly_damaging(0.681) TCGA-DA-A1HV-06 7 105739611 105739611 G A SYPL1 Missense_Mutation p.P81S 0.16 deleterious(0) probably_damaging(0.975) TCGA-DA-A1HV-06 7 105913094 105913094 C T NAMPT Missense_Mutation p.G110E 0.46 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 7 105913095 105913095 C T NAMPT Missense_Mutation p.G110R 0.47 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 7 11076223 11076223 C T PHF14 Missense_Mutation p.P594L 0.62 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1HV-06 7 111982841 111982841 C T ZNF277 3'UTR 0.60 TCGA-DA-A1HV-06 7 113519159 113519159 C T PPP1R3A Missense_Mutation p.G663E 0.57 tolerated(0.65) benign(0.006) TCGA-DA-A1HV-06 7 113519160 113519160 C T PPP1R3A Missense_Mutation p.G663R 0.58 tolerated(0.42) benign(0.009) TCGA-DA-A1HV-06 7 114282580 114282580 C T FOXP2 Silent p.S322S 0.59 TCGA-DA-A1HV-06 7 11485797 11485797 C T THSD7A Missense_Mutation p.M985I 0.20 tolerated(0.1) benign(0.017) TCGA-DA-A1HV-06 7 115624483 115624483 G A TFEC Missense_Mutation p.H5Y 0.58 tolerated_low_confidence(0.23) benign(0.001) TCGA-DA-A1HV-06 7 119914951 119914951 C T KCND2 Missense_Mutation p.P89S 0.56 deleterious(0.02) probably_damaging(0.917) TCGA-DA-A1HV-06 7 119915766 119915766 C T KCND2 Silent p.A360A 0.15 TCGA-DA-A1HV-06 7 120629778 120629778 C T CPED1 Missense_Mutation p.L35F 0.15 deleterious(0.04) probably_damaging(0.96) TCGA-DA-A1HV-06 7 120740026 120740026 G A CPED1 Missense_Mutation p.E266K 0.60 tolerated(0.19) benign(0.003) TCGA-DA-A1HV-06 7 121651530 121651530 C T PTPRZ1 Silent p.I810I 0.57 TCGA-DA-A1HV-06 7 122635433 122635433 C T TAS2R16 Missense_Mutation p.E86K 0.23 tolerated(0.09) benign(0.243) TCGA-DA-A1HV-06 7 124386537 124386537 G A GPR37 3'UTR 0.19 TCGA-DA-A1HV-06 7 12728360 12728360 C T ARL4A Missense_Mutation p.P161S 0.60 tolerated(0.89) possibly_damaging(0.842) TCGA-DA-A1HV-06 7 128582311 128582311 G A IRF5 Missense_Mutation p.G59E 0.15 tolerated(1) benign(0.167) TCGA-DA-A1HV-06 7 131831449 131831449 G A PLXNA4 Silent p.I1625I 0.56 TCGA-DA-A1HV-06 7 136700313 136700313 G A CHRM2 Missense_Mutation p.S234N 0.29 tolerated(0.2) benign(0.049) TCGA-DA-A1HV-06 7 137282621 137282621 C T DGKI Missense_Mutation p.R428Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 7 139268718 139268718 G A HIPK2 Missense_Mutation p.S937F 0.58 tolerated(0.06) benign(0.002) TCGA-DA-A1HV-06 7 139299045 139299045 G A HIPK2 Silent p.P659P 0.36 TCGA-DA-A1HV-06 7 139719976 139719976 G A TBXAS1 3'UTR 0.60 TCGA-DA-A1HV-06 7 141408682 141408682 G A WEE2 Missense_Mutation p.E42K 0.15 tolerated(0.15) benign(0.002) TCGA-DA-A1HV-06 7 141760126 141760126 C T MGAM Missense_Mutation p.P1359S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HV-06 7 141763375 141763375 C T MGAM Missense_Mutation p.P1445L 1.00 deleterious(0.02) possibly_damaging(0.896) TCGA-DA-A1HV-06 7 141799479 141799479 C T MGAM Missense_Mutation p.H1710Y 0.18 deleterious(0.01) possibly_damaging(0.721) TCGA-DA-A1HV-06 7 142045570 142045570 G A TRBV4-2 Missense_Mutation p.G33E 0.64 tolerated(0.47) benign(0.261) TCGA-DA-A1HV-06 7 142099474 142099474 G A TRBV7-8 Missense_Mutation p.L110F 0.12 tolerated(0.34) benign(0.047) TCGA-DA-A1HV-06 7 142143717 142143717 G A TRBV6-7 Silent p.F93F 0.11 TCGA-DA-A1HV-06 7 144060399 144060399 G A ARHGEF5 Missense_Mutation p.E213K 0.15 tolerated(0.69) benign(0.002) TCGA-DA-A1HV-06 7 146536922 146536922 G T CNTNAP2 Missense_Mutation p.V110L 0.56 tolerated(0.12) possibly_damaging(0.702) TCGA-DA-A1HV-06 7 147815242 147815242 C T CNTNAP2 Missense_Mutation p.P806S 0.47 deleterious(0.04) benign(0.051) TCGA-DA-A1HV-06 7 149497416 149497416 G A SSPO RNA 0.41 TCGA-DA-A1HV-06 7 149498885 149498885 C T SSPO RNA 0.52 TCGA-DA-A1HV-06 7 150037222 150037222 C T RARRES2 Nonsense_Mutation p.W82* 0.18 TCGA-DA-A1HV-06 7 150389785 150389785 C T GIMAP2 Silent p.A137A 0.20 TCGA-DA-A1HV-06 7 150499405 150499405 G A TMEM176A Missense_Mutation p.G93R 0.21 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 7 150558089 150558089 C T AOC1 Missense_Mutation p.P683L 0.23 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 7 150644749 150644749 C T KCNH2 Silent p.G970G 0.55 TCGA-DA-A1HV-06 7 150647448 150647448 G A KCNH2 Silent p.L736L 0.68 TCGA-DA-A1HV-06 7 150732715 150732715 C T ABCB8 Silent p.S271S 0.59 TCGA-DA-A1HV-06 7 150761398 150761398 C T SLC4A2 Missense_Mutation p.A54V 0.13 deleterious_low_confidence(0.02) benign(0.049) TCGA-DA-A1HV-06 7 150761399 150761399 C T SLC4A2 Silent p.A54A 0.12 TCGA-DA-A1HV-06 7 150771341 150771341 C T SLC4A2 Silent p.F917F 0.60 TCGA-DA-A1HV-06 7 150873258 150873258 G A ASB10 Missense_Mutation p.P449S 0.25 tolerated(0.39) probably_damaging(0.988) TCGA-DA-A1HV-06 7 151093146 151093146 G A WDR86 Missense_Mutation p.P148S 0.19 tolerated(0.4) benign(0.033) TCGA-DA-A1HV-06 7 151133346 151133346 G A CRYGN Silent p.F112F 0.63 TCGA-DA-A1HV-06 7 151265868 151265868 G A PRKAG2 Silent p.D389D 0.74 TCGA-DA-A1HV-06 7 157369323 157369323 G A PTPRN2 Missense_Mutation p.S922F 0.53 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HV-06 7 157475510 157475510 G A PTPRN2 Silent p.I636I 0.61 TCGA-DA-A1HV-06 7 157475513 157475513 G A PTPRN2 Silent p.L635L 0.26 TCGA-DA-A1HV-06 7 157874027 157874027 G A PTPRN2 Silent p.V562V 0.49 TCGA-DA-A1HV-06 7 158486165 158486165 G A NCAPG2 Silent p.L35L 0.19 TCGA-DA-A1HV-06 7 23776582 23776582 A G STK31 Missense_Mutation p.K301R 0.16 tolerated(0.56) benign(0.147) TCGA-DA-A1HV-06 7 24681342 24681342 A C MPP6 Missense_Mutation p.E42A 0.14 deleterious(0.01) benign(0.364) TCGA-DA-A1HV-06 7 27135272 27135272 C T HOXA1 Missense_Mutation p.G87E 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HV-06 7 2977616 2977622 CTTTCCC GATTCAT CARD11 Nonsense_Mutation p.GK355*I 0.09 TCGA-DA-A1HV-06 7 31890268 31890268 G A PDE1C Missense_Mutation p.H340Y 0.53 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 7 31918775 31918775 C T PDE1C Missense_Mutation p.E147K 0.26 deleterious(0) probably_damaging(0.987) TCGA-DA-A1HV-06 7 34884512 34884512 G A NPSR1 Silent p.G254G 0.16 TCGA-DA-A1HV-06 7 34889188 34889188 C T NPSR1 Intron 0.56 TCGA-DA-A1HV-06 7 34889261 34889261 C T NPSR1 Intron 0.67 TCGA-DA-A1HV-06 7 35280521 35280521 A G TBX20 Silent p.F261F 0.20 TCGA-DA-A1HV-06 7 37262237 37262237 G A ELMO1 Missense_Mutation p.P255S 0.20 tolerated(0.64) possibly_damaging(0.85) TCGA-DA-A1HV-06 7 4116724 4116724 C T SDK1 Silent p.L1035L 0.27 TCGA-DA-A1HV-06 7 4153707 4153707 C T SDK1 Silent p.S1208S 0.56 TCGA-DA-A1HV-06 7 41729703 41729703 C T INHBA Missense_Mutation p.E276K 0.77 tolerated_low_confidence(0.28) benign(0.011) TCGA-DA-A1HV-06 7 43591895 43591895 C T HECW1 Silent p.I1490I 0.12 TCGA-DA-A1HV-06 7 44579891 44579891 G A NPC1L1 Silent p.F35F 0.53 TCGA-DA-A1HV-06 7 47847874 47847874 C T PKD1L1 Missense_Mutation p.D2600N 0.65 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 7 48563985 48563985 C T ABCA13 Silent p.F4731F 0.20 TCGA-DA-A1HV-06 7 50121476 50121476 G A ZPBP Silent p.L76L 0.36 TCGA-DA-A1HV-06 7 5330756 5330756 G A SLC29A4 Silent p.G101G 0.53 TCGA-DA-A1HV-06 7 55874937 55874937 G A SEPT14 Missense_Mutation p.H278Y 0.22 deleterious(0.02) benign(0.186) TCGA-DA-A1HV-06 7 55874950 55874950 C T SEPT14 Silent p.V273V 0.21 TCGA-DA-A1HV-06 7 56006968 56006968 C T ZNF713 Missense_Mutation p.P188S 0.18 tolerated(0.32) benign(0.07) TCGA-DA-A1HV-06 7 6204418 6204418 G A CYTH3 3'UTR 0.62 TCGA-DA-A1HV-06 7 64167562 64167562 C T ZNF107 Missense_Mutation p.H294Y 0.57 deleterious(0.01) benign(0.097) TCGA-DA-A1HV-06 7 64439054 64439054 G A ZNF117 Missense_Mutation p.H299Y 0.20 deleterious(0) probably_damaging(0.932) TCGA-DA-A1HV-06 7 66410097 66410097 C T TMEM248 Silent p.T98T 0.63 TCGA-DA-A1HV-06 7 71142229 71142229 G A WBSCR17 Missense_Mutation p.D480N 0.55 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1HV-06 7 73790454 73790454 C T CLIP2 Nonsense_Mutation p.Q575* 0.39 TCGA-DA-A1HV-06 7 73790813 73790813 G A CLIP2 Silent p.E694E 0.25 TCGA-DA-A1HV-06 7 73790815 73790815 A T CLIP2 Missense_Mutation p.E695V 0.25 deleterious(0) benign(0.284) TCGA-DA-A1HV-06 7 74211697 74211697 G A GTF2IRD2 Silent p.L718L 0.19 TCGA-DA-A1HV-06 7 7516759 7516759 C T COL28A1 Missense_Mutation p.G406E 0.56 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 7 75634723 75634723 C T STYXL1 Splice_Site p.X152_splice 0.58 TCGA-DA-A1HV-06 7 77756669 77756669 C T MAGI2 Missense_Mutation p.D1090N 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-DA-A1HV-06 7 8167558 8167558 G T ICA1 Missense_Mutation p.F425L 0.15 deleterious(0.02) benign(0.422) TCGA-DA-A1HV-06 7 82545811 82545811 G A PCLO Missense_Mutation p.R3831C 0.66 unknown(0) TCGA-DA-A1HV-06 7 82583475 82583475 G A PCLO Missense_Mutation p.S2265F 0.60 unknown(0) TCGA-DA-A1HV-06 7 83026040 83026040 C T SEMA3E Missense_Mutation p.G458R 0.61 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 7 86394825 86394825 G A GRM3 Missense_Mutation p.E122K 0.17 tolerated(0.82) benign(0.216) TCGA-DA-A1HV-06 7 89937106 89937106 G A C7orf63 Missense_Mutation p.E830K 0.57 tolerated(0.05) benign(0.329) TCGA-DA-A1HV-06 7 91682262 91682262 C T AKAP9 Missense_Mutation p.T1864I 0.17 probably_damaging(0.999) TCGA-DA-A1HV-06 7 92730535 92730535 G A SAMD9 3'UTR 0.50 TCGA-DA-A1HV-06 7 92731534 92731534 G A SAMD9 Missense_Mutation p.R1293W 0.21 tolerated(0.08) probably_damaging(0.95) TCGA-DA-A1HV-06 7 92818554 92818554 G A HEPACAM2 3'UTR 0.11 TCGA-DA-A1HV-06 7 93090161 93090161 G A CALCR Missense_Mutation p.P241L 0.22 tolerated(0.24) probably_damaging(0.999) TCGA-DA-A1HV-06 7 93112077 93112077 C T CALCR Intron 0.15 TCGA-DA-A1HV-06 7 99305539 99305539 C T CYP3A7 Missense_Mutation p.G438R 0.16 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 7 99773255 99773255 G A GPC2 Silent p.A196A 0.17 TCGA-DA-A1HV-06 7 99773368 99773368 A G GPC2 Silent p.L159L 0.15 TCGA-DA-A1HV-06 8 100443785 100443785 C T VPS13B Missense_Mutation p.P1035S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-DA-A1HV-06 8 101661507 101661507 C T SNX31 Missense_Mutation p.E46K 0.52 deleterious(0) possibly_damaging(0.492) TCGA-DA-A1HV-06 8 10469422 10469422 G A RP1L1 Missense_Mutation p.S729F 0.26 benign(0.202) TCGA-DA-A1HV-06 8 10469444 10469444 G A RP1L1 Missense_Mutation p.P722S 0.27 benign(0.13) TCGA-DA-A1HV-06 8 10469796 10469796 C T RP1L1 Silent p.A604A 0.47 TCGA-DA-A1HV-06 8 104898241 104898241 G A RIMS2 Missense_Mutation p.E472K 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.693) TCGA-DA-A1HV-06 8 105463515 105463515 C T DPYS Missense_Mutation p.D128N 0.51 deleterious(0.02) probably_damaging(1) TCGA-DA-A1HV-06 8 106573688 106573688 G A ZFPM2 Missense_Mutation p.M133I 0.14 tolerated(1) benign(0.002) TCGA-DA-A1HV-06 8 106814196 106814196 C T ZFPM2 Missense_Mutation p.S629F 0.37 deleterious(0.02) possibly_damaging(0.646) TCGA-DA-A1HV-06 8 107722882 107722882 C T OXR1 Nonsense_Mutation p.R554* 0.15 TCGA-DA-A1HV-06 8 110131462 110131462 G A TRHR Silent p.Q325Q 0.08 TCGA-DA-A1HV-06 8 110447418 110447418 G A PKHD1L1 Splice_Site p.X1114_splice 0.18 TCGA-DA-A1HV-06 8 110454288 110454288 G A PKHD1L1 Silent p.G1419G 0.62 TCGA-DA-A1HV-06 8 110588237 110588237 C T SYBU Missense_Mutation p.S297N 0.20 tolerated(0.08) benign(0.197) TCGA-DA-A1HV-06 8 11412914 11412914 G A BLK Silent p.Q231Q 0.16 TCGA-DA-A1HV-06 8 118159264 118159264 G A SLC30A8 Missense_Mutation p.G48E 0.41 tolerated(0.33) benign(0.02) TCGA-DA-A1HV-06 8 118169949 118169949 C T SLC30A8 Silent p.L146L 0.46 TCGA-DA-A1HV-06 8 118185004 118185004 G A SLC30A8 3'UTR 0.25 TCGA-DA-A1HV-06 8 121457547 121457547 G A MRPL13 5'UTR 0.54 TCGA-DA-A1HV-06 8 121471542 121471542 C T MTBP Missense_Mutation p.L279F 0.33 tolerated(0.23) benign(0.001) TCGA-DA-A1HV-06 8 124267562 124267562 C T ZHX1 Missense_Mutation p.E209K 0.42 tolerated(0.56) benign(0.002) TCGA-DA-A1HV-06 8 124267564 124267564 T A ZHX1 Missense_Mutation p.E208V 0.43 tolerated(0.11) benign(0.001) TCGA-DA-A1HV-06 8 124371509 124371509 G A ATAD2 Missense_Mutation p.P445L 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 8 124384064 124384064 G A ATAD2 Missense_Mutation p.P128S 0.38 tolerated_low_confidence(0.17) benign(0.001) TCGA-DA-A1HV-06 8 125551345 125551345 C T TATDN1 5'Flank 0.70 TCGA-DA-A1HV-06 8 130891648 130891648 G A FAM49B Silent p.F20F 0.34 TCGA-DA-A1HV-06 8 131812783 131812783 C T ADCY8 Silent p.V983V 0.26 TCGA-DA-A1HV-06 8 131848603 131848603 C T ADCY8 Missense_Mutation p.M865I 0.60 tolerated(0.14) possibly_damaging(0.519) TCGA-DA-A1HV-06 8 131880139 131880139 G A ADCY8 Silent p.I721I 0.39 TCGA-DA-A1HV-06 8 133198346 133198346 G A KCNQ3 Silent p.L157L 0.36 TCGA-DA-A1HV-06 8 133894734 133894734 G A TG Missense_Mutation p.E256K 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1HV-06 8 139144793 139144793 C T FAM135B 3'UTR 0.31 TCGA-DA-A1HV-06 8 143694973 143694973 G A ARC Silent p.F220F 0.17 TCGA-DA-A1HV-06 8 143927899 143927899 A G GML Silent p.P90P 0.49 TCGA-DA-A1HV-06 8 143996194 143996194 C T CYP11B2 Silent p.R242R 0.24 TCGA-DA-A1HV-06 8 143999259 143999259 C T CYP11B2 5'UTR 0.41 TCGA-DA-A1HV-06 8 144239839 144239839 A T LY6H Missense_Mutation p.F105Y 0.31 tolerated(0.33) possibly_damaging(0.794) TCGA-DA-A1HV-06 8 144946353 144946353 G A EPPK1 Silent p.L357L 0.37 TCGA-DA-A1HV-06 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.47 deleterious(0) probably_damaging(0.973) TCGA-DA-A1HV-06 8 2046768 2046768 C T MYOM2 Missense_Mutation p.P799S 0.38 tolerated(0.05) possibly_damaging(0.682) TCGA-DA-A1HV-06 8 2057242 2057242 T C MYOM2 Missense_Mutation p.F1034L 0.49 tolerated(0.17) probably_damaging(0.995) TCGA-DA-A1HV-06 8 2089090 2089090 C T MYOM2 Nonsense_Mutation p.Q1331* 0.10 TCGA-DA-A1HV-06 8 22168740 22168740 C T PIWIL2 Missense_Mutation p.P639L 0.42 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 8 23114091 23114091 C T CHMP7 Missense_Mutation p.S259F 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-DA-A1HV-06 8 24170910 24170910 C T ADAM28 Silent p.F131F 0.43 TCGA-DA-A1HV-06 8 24298541 24298541 C T ADAM7 5'UTR 0.42 TCGA-DA-A1HV-06 8 24772138 24772138 G A NEFM Missense_Mutation p.E278K 0.35 deleterious(0) unknown(0) TCGA-DA-A1HV-06 8 25745398 25745398 C T EBF2 Missense_Mutation p.G281D 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-DA-A1HV-06 8 26366022 26366022 C T PNMA2 Missense_Mutation p.G84R 0.11 deleterious(0) possibly_damaging(0.893) TCGA-DA-A1HV-06 8 27308328 27308328 G A PTK2B Silent p.K801K 0.24 TCGA-DA-A1HV-06 8 27319063 27319063 G A CHRNA2 3'UTR 0.34 TCGA-DA-A1HV-06 8 28574278 28574278 C T EXTL3 Silent p.I234I 0.13 TCGA-DA-A1HV-06 8 2964163 2964163 C T CSMD1 Missense_Mutation p.G2279E 0.38 probably_damaging(1) TCGA-DA-A1HV-06 8 30706620 30706620 C T TEX15 5'Flank 0.54 TCGA-DA-A1HV-06 8 3216730 3216730 A C CSMD1 Missense_Mutation p.L1083R 0.47 probably_damaging(0.97) TCGA-DA-A1HV-06 8 32621649 32621649 A C NRG1 Missense_Mutation p.K556T 0.30 deleterious(0) probably_damaging(0.966) TCGA-DA-A1HV-06 8 39079206 39079206 C T ADAM32 Silent p.C437C 0.15 TCGA-DA-A1HV-06 8 39613303 39613303 G A ADAM2 Missense_Mutation p.H581Y 0.41 tolerated(1) benign(0.005) TCGA-DA-A1HV-06 8 39626974 39626974 C T ADAM2 Silent p.Q383Q 0.24 TCGA-DA-A1HV-06 8 39679182 39679182 C T ADAM2 Splice_Site p.X90_splice 0.33 TCGA-DA-A1HV-06 8 39781029 39781029 G A IDO1 Silent p.R193R 0.45 TCGA-DA-A1HV-06 8 41801328 41801328 G A KAT6A Silent p.I722I 0.16 TCGA-DA-A1HV-06 8 51664574 51664574 G A SNTG1 Missense_Mutation p.R433K 0.17 tolerated(0.07) benign(0.033) TCGA-DA-A1HV-06 8 52336155 52336155 T G PXDNL Missense_Mutation p.N592T 0.11 tolerated(0.15) benign(0.006) TCGA-DA-A1HV-06 8 55538985 55538985 G A RP1 Missense_Mutation p.R848K 0.38 tolerated(0.3) benign(0.015) TCGA-DA-A1HV-06 8 55539794 55539794 C T RP1 Missense_Mutation p.H1118Y 0.43 deleterious(0) benign(0.021) TCGA-DA-A1HV-06 8 56015501 56015501 C T XKR4 Silent p.F151F 0.41 TCGA-DA-A1HV-06 8 61655534 61655534 C T CHD7 Missense_Mutation p.P515S 0.29 possibly_damaging(0.641) TCGA-DA-A1HV-06 8 66539522 66539522 G A ARMC1 Nonsense_Mutation p.Q38* 0.22 TCGA-DA-A1HV-06 8 67578227 67578227 G C VCPIP1 Missense_Mutation p.L323V 0.54 tolerated(0.08) probably_damaging(0.951) TCGA-DA-A1HV-06 8 70981505 70981505 G A PRDM14 Silent p.F197F 0.26 TCGA-DA-A1HV-06 8 72211355 72211355 G A EYA1 Silent p.S251S 0.29 TCGA-DA-A1HV-06 8 73479947 73479947 T G KCNB2 5'UTR 0.42 TCGA-DA-A1HV-06 8 7686391 7686391 G A DEFB106A Silent p.G38G 0.40 TCGA-DA-A1HV-06 8 7698630 7698630 G A DEFB104A Missense_Mutation p.E45K 0.26 deleterious(0) possibly_damaging(0.874) TCGA-DA-A1HV-06 8 77764753 77764753 G A ZFHX4 Missense_Mutation p.E1866K 0.54 benign(0.005) TCGA-DA-A1HV-06 8 7807556 7807556 G A ZNF705B Silent p.G47G 0.14 TCGA-DA-A1HV-06 8 87081804 87081804 C T PSKH2 Silent p.L16L 0.65 TCGA-DA-A1HV-06 8 87229822 87229822 G A SLC7A13 Silent p.I352I 0.52 TCGA-DA-A1HV-06 8 8748817 8748817 G A MFHAS1 Silent p.F584F 0.57 TCGA-DA-A1HV-06 8 88249292 88249292 C T CNBD1 Silent p.F241F 0.46 TCGA-DA-A1HV-06 8 89058897 89058897 C T MMP16 Missense_Mutation p.G497S 0.23 tolerated(0.33) probably_damaging(0.994) TCGA-DA-A1HV-06 8 8998783 8998783 G A PPP1R3B Nonsense_Mutation p.R127* 0.39 TCGA-DA-A1HV-06 8 99118530 99118530 G A HRSP12 Silent p.L66L 0.43 TCGA-DA-A1HV-06 9 101911622 101911622 C T TGFBR1 3'UTR 0.60 TCGA-DA-A1HV-06 9 104187203 104187203 C T ALDOB Silent p.Q307Q 0.59 TCGA-DA-A1HV-06 9 107298654 107298654 C T OR13C3 Missense_Mutation p.M147I 0.56 tolerated(0.11) benign(0.064) TCGA-DA-A1HV-06 9 107331930 107331930 C T OR13C8 Missense_Mutation p.A161V 0.65 tolerated(0.55) benign(0.122) TCGA-DA-A1HV-06 9 113276344 113276344 C T SVEP1 Missense_Mutation p.G336E 0.80 probably_damaging(1) TCGA-DA-A1HV-06 9 116346160 116346160 C T RGS3 Missense_Mutation p.S823F 0.56 deleterious_low_confidence(0.03) benign(0.002) TCGA-DA-A1HV-06 9 117005812 117005812 C T COL27A1 Missense_Mutation p.P969L 0.92 unknown(0) TCGA-DA-A1HV-06 9 118092 118092 G A FOXD4 Missense_Mutation p.R10C 0.61 tolerated(0.1) benign(0.007) TCGA-DA-A1HV-06 9 119802190 119802190 G A ASTN2 Missense_Mutation p.S393F 0.61 deleterious(0) unknown(0) TCGA-DA-A1HV-06 9 125281530 125281530 C T OR1J4 Silent p.I37I 0.58 TCGA-DA-A1HV-06 9 125437717 125437717 C T OR1L3 Silent p.F103F 0.64 TCGA-DA-A1HV-06 9 125562644 125562644 G A OR1K1 Silent p.K81K 0.53 TCGA-DA-A1HV-06 9 125563215 125563215 G A OR1K1 Missense_Mutation p.G272S 0.53 deleterious(0.03) possibly_damaging(0.492) TCGA-DA-A1HV-06 9 131115732 131115732 C T SLC27A4 Silent p.F412F 0.66 TCGA-DA-A1HV-06 9 133995754 133995754 C T AIF1L 3'UTR 0.57 TCGA-DA-A1HV-06 9 134323085 134323085 C T PRRC2B Silent p.R338R 0.62 TCGA-DA-A1HV-06 9 135862155 135862155 C T GFI1B Silent p.A30A 0.75 TCGA-DA-A1HV-06 9 137775148 137775148 G A FCN2 Missense_Mutation p.G72E 0.54 deleterious(0.04) possibly_damaging(0.764) TCGA-DA-A1HV-06 9 137777198 137777198 G A FCN2 Missense_Mutation p.G139R 0.50 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HV-06 9 139734637 139734637 G A RABL6 Silent p.K655K 0.52 TCGA-DA-A1HV-06 9 139873803 139873803 C T PTGDS Intron 0.33 TCGA-DA-A1HV-06 9 140115218 140115218 G A RNF208 Silent p.S149S 0.65 TCGA-DA-A1HV-06 9 140373553 140373553 G A PNPLA7 Silent p.L906L 0.64 TCGA-DA-A1HV-06 9 14806683 14806683 T A FREM1 Nonsense_Mutation p.K1084* 0.91 TCGA-DA-A1HV-06 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.66 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1HV-06 9 32419034 32419034 A T ACO1 Splice_Site p.X220_splice 0.52 TCGA-DA-A1HV-06 9 35555368 35555368 C T RUSC2 Missense_Mutation p.P776S 0.50 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 9 35555369 35555369 C T RUSC2 Missense_Mutation p.P776L 0.50 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HV-06 9 6330200 6330200 G A TPD52L3 3'UTR 0.66 TCGA-DA-A1HV-06 9 70177138 70177138 C T FOXD4L5 Silent p.P282P 0.26 TCGA-DA-A1HV-06 9 71509424 71509424 C T PIP5K1B Missense_Mutation p.S214F 0.42 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HV-06 9 71986421 71986421 C T FAM189A2 Missense_Mutation p.L7F 0.56 tolerated(0.2) unknown(0) TCGA-DA-A1HV-06 9 77416879 77416879 C T TRPM6 Missense_Mutation p.M648I 0.62 deleterious(0) possibly_damaging(0.611) TCGA-DA-A1HV-06 9 79322954 79322954 G A PRUNE2 Silent p.S1412S 0.59 TCGA-DA-A1HV-06 9 79325845 79325845 C T PRUNE2 Missense_Mutation p.D449N 0.59 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 9 82336705 82336705 G A TLE4 Missense_Mutation p.D630N 0.71 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1HV-06 9 8341948 8341948 G A PTPRD Silent p.I1564I 0.41 TCGA-DA-A1HV-06 9 90258300 90258300 C T DAPK1 Missense_Mutation p.R310C 0.59 tolerated(0.11) benign(0.183) TCGA-DA-A1HV-06 9 90534854 90534854 C T SPATA31C1 RNA 0.43 TCGA-DA-A1HV-06 9 91090126 91090126 C T SPIN1 Silent p.S241S 0.55 TCGA-DA-A1HV-06 9 96030984 96030984 C T WNK2 Missense_Mutation p.S1330L 0.65 unknown(0) TCGA-DA-A1HV-06 9 96863937 96863937 G A PTPDC1 Silent p.V699V 0.72 TCGA-DA-A1HV-06 9 99007662 99007662 G A HSD17B3 Missense_Mutation p.P191S 0.51 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HV-06 X 100104846 100104846 C A NOX1 Missense_Mutation p.G404V 0.75 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 X 100125714 100125714 G A NOX1 Silent p.I45I 0.54 TCGA-DA-A1HV-06 X 100625005 100625005 C T BTK Nonsense_Mutation p.W124* 0.68 TCGA-DA-A1HV-06 X 10092359 10092359 C T WWC3 Silent p.P602P 0.62 TCGA-DA-A1HV-06 X 101576707 101576707 G A NXF2 Silent p.S401S 0.32 TCGA-DA-A1HV-06 X 106185956 106185956 C G MORC4 Missense_Mutation p.R722P 0.59 tolerated(0.15) probably_damaging(0.937) TCGA-DA-A1HV-06 X 107224934 107224934 C T TEX13B Missense_Mutation p.E142K 0.57 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 X 107377369 107377369 C T ATG4A Silent p.C125C 0.62 TCGA-DA-A1HV-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.59 TCGA-DA-A1HV-06 X 123778993 123778993 C A TENM1 Nonsense_Mutation p.E626* 0.57 TCGA-DA-A1HV-06 X 125298562 125298562 G A DCAF12L2 Missense_Mutation p.P449L 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 X 127185461 127185461 C T ACTRT1 Missense_Mutation p.R242K 0.59 tolerated(0.49) benign(0) TCGA-DA-A1HV-06 X 12939764 12939764 G A TLR8 Missense_Mutation p.G869S 0.69 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 X 132160170 132160170 G A USP26 Silent p.P693P 0.62 TCGA-DA-A1HV-06 X 132160571 132160571 G A USP26 Missense_Mutation p.P560S 0.57 deleterious(0.05) probably_damaging(0.973) TCGA-DA-A1HV-06 X 135428725 135428725 C T GPR112 Missense_Mutation p.P954S 0.68 tolerated(0.26) benign(0.01) TCGA-DA-A1HV-06 X 135757223 135757223 G A ARHGEF6 Missense_Mutation p.L660F 0.53 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 X 13621433 13621433 C T EGFL6 Intron 0.60 TCGA-DA-A1HV-06 X 142596644 142596644 C T SPANXN3 Silent p.%3D 0.64 TCGA-DA-A1HV-06 X 142716819 142716819 C T SLITRK4 Silent p.L702L 0.61 TCGA-DA-A1HV-06 X 147019652 147019652 C T FMR1 Missense_Mutation p.S387F 0.60 deleterious(0.01) benign(0.017) TCGA-DA-A1HV-06 X 150349224 150349224 C T GPR50 Missense_Mutation p.S390F 0.65 tolerated_low_confidence(0.06) benign(0.006) TCGA-DA-A1HV-06 X 151123221 151123221 A T GABRE Silent p.T491T 0.58 TCGA-DA-A1HV-06 X 151870035 151870035 C T MAGEA6 Missense_Mutation p.P242L 0.61 deleterious(0.04) possibly_damaging(0.883) TCGA-DA-A1HV-06 X 151870036 151870036 C T MAGEA6 Silent p.P242P 0.59 TCGA-DA-A1HV-06 X 151935886 151935886 C T MAGEA3 Missense_Mutation p.G94E 0.54 tolerated(0.17) possibly_damaging(0.85) TCGA-DA-A1HV-06 X 153589684 153589684 G A FLNA Missense_Mutation p.P1067S 0.63 deleterious(0.01) possibly_damaging(0.79) TCGA-DA-A1HV-06 X 154158550 154158550 C T F8 Missense_Mutation p.G1172E 0.43 tolerated(0.96) benign(0.012) TCGA-DA-A1HV-06 X 18234686 18234686 G A BEND2 Missense_Mutation p.P65S 0.72 tolerated(0.65) benign(0.021) TCGA-DA-A1HV-06 X 18342046 18342046 G A SCML2 Silent p.V110V 0.71 TCGA-DA-A1HV-06 X 19507025 19507025 C T MAP3K15 Missense_Mutation p.G141E 0.62 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HV-06 X 22291889 22291889 C T ZNF645 Missense_Mutation p.P261S 0.65 tolerated(0.11) possibly_damaging(0.778) TCGA-DA-A1HV-06 X 26157386 26157386 C T MAGEB18 Missense_Mutation p.S95F 0.52 tolerated(0.23) benign(0.033) TCGA-DA-A1HV-06 X 27999268 27999268 C T DCAF8L1 Missense_Mutation p.D62N 0.61 tolerated_low_confidence(0.47) benign(0.095) TCGA-DA-A1HV-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.63 TCGA-DA-A1HV-06 X 3242365 3242365 G A MXRA5 Missense_Mutation p.S454F 0.61 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HV-06 X 3592715 3592715 G A PRKX Missense_Mutation p.R87C 0.70 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HV-06 X 41069821 41069821 C T USP9X Missense_Mutation p.S1692L 0.68 deleterious(0) probably_damaging(0.985) TCGA-DA-A1HV-06 X 49855127 49855127 G A CLCN5 Missense_Mutation p.R700K 0.47 tolerated(0.18) probably_damaging(0.995) TCGA-DA-A1HV-06 X 50134557 50134557 G A DGKK RNA 0.70 TCGA-DA-A1HV-06 X 53965627 53965627 G A PHF8 Silent p.I1049I 0.60 TCGA-DA-A1HV-06 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.61 TCGA-DA-A1HV-06 X 5821216 5821216 C T NLGN4X Missense_Mutation p.M501I 0.73 deleterious(0.04) benign(0.306) TCGA-DA-A1HV-06 X 64955140 64955140 C T MSN Silent p.F269F 0.69 TCGA-DA-A1HV-06 X 65392390 65392390 C T HEPH Missense_Mutation p.R175C 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A1HV-06 X 65486329 65486329 A T HEPH Missense_Mutation p.M1152L 0.67 tolerated(0.75) benign(0.001) TCGA-DA-A1HV-06 X 69478288 69478288 G A P2RY4 3'UTR 0.50 TCGA-DA-A1HV-06 X 69626151 69626151 C T KIF4A Missense_Mutation p.P1007S 0.67 tolerated(0.35) benign(0.001) TCGA-DA-A1HV-06 X 69826839 69826839 C T TEX11 Missense_Mutation p.M655I 0.46 tolerated(0.52) benign(0) TCGA-DA-A1HV-06 X 70356750 70356750 C T MED12 Missense_Mutation p.R1808W 0.56 benign(0.328) TCGA-DA-A1HV-06 X 70782856 70782856 C T OGT Missense_Mutation p.P713S 0.65 tolerated(0.09) benign(0.125) TCGA-DA-A1HV-06 X 71787749 71787749 G A HDAC8 Missense_Mutation p.H143Y 0.68 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HV-06 X 72433365 72433365 C T NAP1L2 Missense_Mutation p.G322R 0.60 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HV-06 X 73960801 73960801 C T KIAA2022 Silent p.R1197R 0.59 TCGA-DA-A1HV-06 X 73962828 73962828 C T KIAA2022 Missense_Mutation p.E522K 0.92 deleterious(0.02) possibly_damaging(0.894) TCGA-DA-A1HV-06 X 77528442 77528442 C T CYSLTR1 Missense_Mutation p.D268N 0.71 tolerated(0.17) benign(0.068) TCGA-DA-A1HV-06 X 8767068 8767068 C T FAM9A Silent p.R53R 0.61 TCGA-DA-A1HV-06 X 92928074 92928074 T C NAP1L3 Missense_Mutation p.K77R 0.22 tolerated(0.13) possibly_damaging(0.829) TCGA-DA-A1HW-06 10 55570336 55570336 C T PCDH15 Missense_Mutation p.E1495K 0.46 benign(0.038) TCGA-DA-A1HW-06 10 55826552 55826552 C T PCDH15 Missense_Mutation p.E729K 0.50 deleterious(0) possibly_damaging(0.876) TCGA-DA-A1HW-06 10 85972965 85972965 C T CDHR1 Missense_Mutation p.S634F 0.42 tolerated(0.68) benign(0.013) TCGA-DA-A1HW-06 11 103907691 103907691 C T PDGFD Intron 0.54 TCGA-DA-A1HW-06 11 105842717 105842717 G A GRIA4 Missense_Mutation p.D791N 0.57 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 11 112088573 112088573 C T BCO2 Silent p.F572F 0.43 TCGA-DA-A1HW-06 11 113677220 113677220 C T USP28 Silent p.G797G 0.50 TCGA-DA-A1HW-06 11 124016027 124016027 G A VWA5A Silent p.E746E 0.41 TCGA-DA-A1HW-06 11 1271262 1271262 C T MUC5B Silent p.S4384S 0.59 TCGA-DA-A1HW-06 11 18231859 18231859 G A RP11-113D6.10 3'UTR 0.50 TCGA-DA-A1HW-06 11 18357426 18357426 G A GTF2H1 Missense_Mutation p.D94N 0.35 deleterious(0.01) benign(0.052) TCGA-DA-A1HW-06 11 45955488 45955488 G A PHF21A 3'UTR 0.19 TCGA-DA-A1HW-06 11 48346900 48346900 G A OR4C3 Silent p.E136E 0.19 TCGA-DA-A1HW-06 11 49179583 49179583 C T FOLH1 Missense_Mutation p.D485N 0.10 tolerated(0.17) probably_damaging(0.992) TCGA-DA-A1HW-06 11 55322838 55322838 G A OR4C15 Silent p.R352R 0.58 TCGA-DA-A1HW-06 11 56468245 56468245 C T OR9G1 Missense_Mutation p.P128S 0.11 deleterious(0) probably_damaging(0.95) TCGA-DA-A1HW-06 11 58978890 58978890 G A MPEG1 Silent p.F483F 0.45 TCGA-DA-A1HW-06 11 60470919 60470919 G A MS4A8 Silent p.G96G 0.12 TCGA-DA-A1HW-06 11 60567384 60567384 G A MS4A10 3'UTR 0.10 TCGA-DA-A1HW-06 11 61895761 61895761 G A INCENP Missense_Mutation p.R43H 0.42 deleterious(0) unknown(0) TCGA-DA-A1HW-06 11 63174115 63174115 G A SLC22A9 Missense_Mutation p.R407Q 0.33 deleterious(0.05) possibly_damaging(0.867) TCGA-DA-A1HW-06 11 63486692 63486692 G A RTN3 Missense_Mutation p.E240K 0.12 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HW-06 11 66333315 66333315 G A CTSF Silent p.S317S 0.11 TCGA-DA-A1HW-06 11 67266146 67266146 G A PITPNM1 Missense_Mutation p.P469S 0.08 deleterious(0.02) possibly_damaging(0.572) TCGA-DA-A1HW-06 11 71238569 71238569 G T KRTAP5-7 Missense_Mutation p.G75W 0.39 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1HW-06 11 7949581 7949581 G A OR10A6 Missense_Mutation p.P210L 0.48 deleterious(0) possibly_damaging(0.833) TCGA-DA-A1HW-06 11 89420549 89420549 C T FOLH1B RNA 0.42 TCGA-DA-A1HW-06 11 94862476 94862476 C T ENDOD1 Silent p.L412L 0.54 TCGA-DA-A1HW-06 12 100774536 100774536 G A SLC17A8 Silent p.R53R 0.34 TCGA-DA-A1HW-06 12 10569334 10569334 C T KLRC3 Nonsense_Mutation p.W173* 0.27 TCGA-DA-A1HW-06 12 10571034 10571034 C T KLRC3 Missense_Mutation p.G132D 0.33 deleterious(0.04) probably_damaging(0.979) TCGA-DA-A1HW-06 12 108917343 108917343 G A SART3 Missense_Mutation p.P928L 0.30 tolerated(0.05) benign(0.01) TCGA-DA-A1HW-06 12 112654721 112654721 G A HECTD4 Missense_Mutation p.P2268L 0.30 possibly_damaging(0.787) TCGA-DA-A1HW-06 12 112691863 112691863 G A HECTD4 Missense_Mutation p.P998L 0.34 probably_damaging(0.927) TCGA-DA-A1HW-06 12 18847928 18847928 C T PLCZ1 Silent p.L459L 0.34 TCGA-DA-A1HW-06 12 1996187 1996187 C T CACNA2D4 Missense_Mutation p.R277Q 0.18 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HW-06 12 21757544 21757544 G A GYS2 5'UTR 0.20 TCGA-DA-A1HW-06 12 25357093 25357093 C T LYRM5 Silent p.F40F 0.39 TCGA-DA-A1HW-06 12 30818721 30818721 G A IPO8 Missense_Mutation p.P427L 0.31 deleterious(0.03) possibly_damaging(0.6) TCGA-DA-A1HW-06 12 42499824 42499824 G A GXYLT1 Silent p.I220I 0.27 TCGA-DA-A1HW-06 12 43887025 43887025 C T ADAMTS20 Missense_Mutation p.G300E 0.20 tolerated(0.15) probably_damaging(1) TCGA-DA-A1HW-06 12 4747274 4747274 C T AKAP3 Nonsense_Mutation p.W30* 0.31 TCGA-DA-A1HW-06 12 48174103 48174103 G A SLC48A1 3'UTR 0.26 TCGA-DA-A1HW-06 12 53646733 53646733 C T MFSD5 Silent p.F145F 0.42 TCGA-DA-A1HW-06 12 54911364 54911364 C T NCKAP1L Silent p.T381T 0.39 TCGA-DA-A1HW-06 12 56510412 56510412 C T RPL41 5'UTR 0.39 TCGA-DA-A1HW-06 12 56998448 56998448 G A BAZ2A Nonsense_Mutation p.Q964* 0.25 TCGA-DA-A1HW-06 12 57398619 57398619 G A ZBTB39 Missense_Mutation p.T28I 0.36 tolerated(0.07) probably_damaging(0.998) TCGA-DA-A1HW-06 12 57640632 57640632 G A STAC3 Silent p.I186I 0.39 TCGA-DA-A1HW-06 12 6425066 6425066 G A PLEKHG6 Missense_Mutation p.R196Q 0.50 tolerated(0.13) benign(0.258) TCGA-DA-A1HW-06 12 64519840 64519840 C T SRGAP1 Silent p.L770L 0.40 TCGA-DA-A1HW-06 12 69207352 69207352 C T MDM2 Missense_Mutation p.L40F 0.33 tolerated(0.42) probably_damaging(0.992) TCGA-DA-A1HW-06 12 71966646 71966646 G A LGR5 Missense_Mutation p.E385K 0.31 tolerated(0.32) benign(0.038) TCGA-DA-A1HW-06 12 75728485 75728485 C T GLIPR1L1 5'UTR 0.33 TCGA-DA-A1HW-06 12 75728486 75728486 C A GLIPR1L1 5'UTR 0.35 TCGA-DA-A1HW-06 12 88586521 88586521 C T TMTC3 Missense_Mutation p.A616V 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HW-06 12 9252104 9252104 G A A2M Missense_Mutation p.S525F 0.38 deleterious(0.04) benign(0.053) TCGA-DA-A1HW-06 12 9309907 9309907 C T PZP Nonsense_Mutation p.W1138* 0.32 TCGA-DA-A1HW-06 12 9907163 9907164 AG - CD69 Intron 0.27 TCGA-DA-A1HW-06 13 20004653 20004653 C T TPTE2 Missense_Mutation p.M419I 0.33 tolerated(0.13) benign(0.065) TCGA-DA-A1HW-06 13 25367326 25367326 C T RNF17 Missense_Mutation p.P361L 0.30 tolerated(0.14) benign(0.041) TCGA-DA-A1HW-06 13 28588626 28588626 G A FLT3 Missense_Mutation p.S941L 0.31 deleterious(0.02) possibly_damaging(0.838) TCGA-DA-A1HW-06 13 32367120 32367120 G A RXFP2 Missense_Mutation p.D561N 0.22 tolerated(0.12) benign(0.033) TCGA-DA-A1HW-06 13 50065897 50065897 G A SETDB2 Nonsense_Mutation p.W691* 0.38 TCGA-DA-A1HW-06 13 92345753 92345753 G A GPC5 Missense_Mutation p.G213E 0.41 tolerated(1) benign(0.302) TCGA-DA-A1HW-06 14 100604194 100604194 C T EVL Intron 0.50 TCGA-DA-A1HW-06 14 101351047 101351047 C T RTL1 Missense_Mutation p.E27K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DA-A1HW-06 14 105222123 105222123 G A SIVA1 Missense_Mutation p.G92D 0.48 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 14 106641711 106641711 C T IGHV1-18 Missense_Mutation p.G68E 0.29 deleterious(0.01) possibly_damaging(0.619) TCGA-DA-A1HW-06 14 20585753 20585753 C T OR4K17 Missense_Mutation p.S63L 0.24 tolerated(0.1) benign(0.046) TCGA-DA-A1HW-06 14 22217758 22217758 G A TRAV5 Missense_Mutation p.D37N 0.42 tolerated(0.37) benign(0.017) TCGA-DA-A1HW-06 14 22294006 22294006 G A TRAV10 Missense_Mutation p.G37E 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-DA-A1HW-06 14 22459004 22459004 C T TRAV16 Silent p.L52L 0.29 TCGA-DA-A1HW-06 14 24618780 24618780 A T RNF31 Missense_Mutation p.H266L 0.33 tolerated(0.31) benign(0.013) TCGA-DA-A1HW-06 14 38678615 38678615 C T SSTR1 Silent p.A7A 0.50 TCGA-DA-A1HW-06 14 45645573 45645573 C T FANCM Nonsense_Mutation p.Q1206* 0.31 TCGA-DA-A1HW-06 14 60194368 60194368 G A RTN1 Missense_Mutation p.S345F 0.38 tolerated(0.1) possibly_damaging(0.653) TCGA-DA-A1HW-06 14 70713652 70713652 C T ADAM21P1 RNA 0.30 TCGA-DA-A1HW-06 14 73490959 73490959 C T ZFYVE1 Silent p.Q86Q 0.36 TCGA-DA-A1HW-06 14 78325425 78325425 C T ADCK1 Missense_Mutation p.L76F 0.25 tolerated(0.71) benign(0.031) TCGA-DA-A1HW-06 14 88693821 88693821 G A KCNK10 Silent p.A193A 0.28 TCGA-DA-A1HW-06 14 93118452 93118452 C T RIN3 Missense_Mutation p.P353L 0.33 deleterious(0.05) possibly_damaging(0.704) TCGA-DA-A1HW-06 14 94401096 94401096 C T ASB2 Missense_Mutation p.R605Q 0.30 deleterious(0.03) probably_damaging(0.937) TCGA-DA-A1HW-06 14 94521401 94521401 T A DDX24 Nonsense_Mutation p.K707* 0.31 TCGA-DA-A1HW-06 14 95899695 95899695 G A SYNE3 Missense_Mutation p.R864C 0.29 tolerated(0.1) possibly_damaging(0.776) TCGA-DA-A1HW-06 15 100537734 100537734 C T ADAMTS17 Silent p.R884R 0.56 TCGA-DA-A1HW-06 15 33993274 33993274 T G RYR3 Missense_Mutation p.L2159R 0.50 probably_damaging(0.979) TCGA-DA-A1HW-06 15 38614474 38614474 C T SPRED1 Silent p.L80L 0.53 TCGA-DA-A1HW-06 15 60646353 60646353 C T ANXA2 Silent p.R214R 0.68 TCGA-DA-A1HW-06 15 60646354 60646354 C T ANXA2 Missense_Mutation p.R214Q 0.65 tolerated(0.14) benign(0.004) TCGA-DA-A1HW-06 15 71124689 71124689 G A LARP6 Missense_Mutation p.S393F 0.49 tolerated(0.09) benign(0.027) TCGA-DA-A1HW-06 15 89172573 89172573 C G AEN Missense_Mutation p.N219K 0.65 tolerated(0.5) benign(0.186) TCGA-DA-A1HW-06 15 89172601 89172601 C T AEN Missense_Mutation p.R229W 0.56 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HW-06 15 94841704 94841704 G A MCTP2 Silent p.G70G 0.68 TCGA-DA-A1HW-06 16 1816261 1816261 C T MAPK8IP3 Silent p.S889S 0.44 TCGA-DA-A1HW-06 16 2814310 2814310 A G SRRM2 Missense_Mutation p.K1261E 0.52 unknown(0) TCGA-DA-A1HW-06 16 30037138 30037138 C T FAM57B Nonsense_Mutation p.W150* 0.40 TCGA-DA-A1HW-06 16 30976109 30976109 C T SETD1A Missense_Mutation p.S349L 0.44 benign(0.017) TCGA-DA-A1HW-06 16 3254567 3254567 C T OR1F1 Silent p.F107F 0.48 TCGA-DA-A1HW-06 16 48177954 48177954 C T ABCC12 Missense_Mutation p.D48N 0.33 tolerated(0.71) benign(0.008) TCGA-DA-A1HW-06 16 48226485 48226485 G A ABCC11 Silent p.F884F 0.45 TCGA-DA-A1HW-06 16 50664200 50664200 C T NKD1 Missense_Mutation p.P189L 0.53 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HW-06 16 55855423 55855423 C T CES1 Missense_Mutation p.E184K 0.55 tolerated(0.23) benign(0.372) TCGA-DA-A1HW-06 16 68156318 68156318 G A NFATC3 Missense_Mutation p.D178N 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HW-06 16 69959304 69959304 C T WWP2 Intron 0.49 TCGA-DA-A1HW-06 16 75646172 75646172 G A ADAT1 Nonsense_Mutation p.Q338* 0.44 TCGA-DA-A1HW-06 16 75646173 75646173 G A ADAT1 Silent p.S337S 0.43 TCGA-DA-A1HW-06 16 81175102 81175102 C T PKD1L2 RNA 0.40 TCGA-DA-A1HW-06 16 824291 824291 G A MSLNL Missense_Mutation p.S622L 0.67 benign(0.027) TCGA-DA-A1HW-06 16 836346 836346 A C RPUSD1 Missense_Mutation p.S181R 0.54 deleterious(0.02) possibly_damaging(0.903) TCGA-DA-A1HW-06 17 10399767 10399767 C T MYH1 Missense_Mutation p.E1586K 0.52 deleterious(0) probably_damaging(0.916) TCGA-DA-A1HW-06 17 16705752 16705752 C T CCDC144A 3'UTR 0.20 TCGA-DA-A1HW-06 17 35880722 35880722 G A SYNRG Silent p.S1232S 0.48 TCGA-DA-A1HW-06 17 40836075 40836075 G A CNTNAP1 Missense_Mutation p.R64Q 0.48 tolerated(0.37) benign(0.004) TCGA-DA-A1HW-06 17 40836076 40836076 G A CNTNAP1 Silent p.R64R 0.48 TCGA-DA-A1HW-06 17 41958487 41958487 C T MPP2 Missense_Mutation p.R320Q 0.48 deleterious(0.01) benign(0.124) TCGA-DA-A1HW-06 17 42992742 42992742 G A GFAP Missense_Mutation p.S38F 0.48 deleterious(0.02) possibly_damaging(0.812) TCGA-DA-A1HW-06 17 48692763 48692763 C T CACNA1G Missense_Mutation p.R1601W 0.51 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HW-06 17 5012287 5012287 C T ZNF232 Missense_Mutation p.G187R 0.44 tolerated(0.15) probably_damaging(0.979) TCGA-DA-A1HW-06 17 57760513 57760513 C G CLTC Missense_Mutation p.R1311G 0.55 deleterious(0.02) possibly_damaging(0.898) TCGA-DA-A1HW-06 17 7579329 7579329 T C TP53 Missense_Mutation p.K120E 0.50 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HW-06 17 77082173 77082173 C T ENGASE Silent p.V658V 0.42 TCGA-DA-A1HW-06 17 77709027 77709027 C T ENPP7 Silent p.F195F 0.38 TCGA-DA-A1HW-06 18 19995826 19995826 G A CTAGE1 Missense_Mutation p.P650L 0.27 tolerated(0.13) benign(0.059) TCGA-DA-A1HW-06 18 21444815 21444815 C T LAMA3 Missense_Mutation p.L1551F 0.35 probably_damaging(0.988) TCGA-DA-A1HW-06 18 29046501 29046501 G A DSG3 Missense_Mutation p.G474S 0.29 deleterious(0.03) probably_damaging(0.942) TCGA-DA-A1HW-06 18 31323656 31323656 T - ASXL3 Frame_Shift_Del p.L1282* 0.18 TCGA-DA-A1HW-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.33 benign(0.006) TCGA-DA-A1HW-06 18 34081944 34081944 C T FHOD3 Silent p.S129S 0.47 TCGA-DA-A1HW-06 18 34839127 34839127 C T CELF4 Intron 0.45 TCGA-DA-A1HW-06 18 34853100 34853100 C T CELF4 Missense_Mutation p.M276I 0.24 tolerated(0.14) probably_damaging(0.956) TCGA-DA-A1HW-06 18 44426691 44426691 A C PIAS2 Silent p.S280S 0.23 TCGA-DA-A1HW-06 18 47792804 47792804 G A CCDC11 5'UTR 0.18 TCGA-DA-A1HW-06 18 59206330 59206330 C T CDH20 Silent p.F494F 0.36 TCGA-DA-A1HW-06 18 63548148 63548148 G A CDH7 3'UTR 0.31 TCGA-DA-A1HW-06 18 72344370 72344381 AACACAGATGAA - ZNF407 In_Frame_Del p.Q467_T470del 0.38 TCGA-DA-A1HW-06 19 10476451 10476451 G A TYK2 Silent p.S251S 0.44 TCGA-DA-A1HW-06 19 16908678 16908678 C T NWD1 Missense_Mutation p.S1147F 0.50 deleterious(0) possibly_damaging(0.865) TCGA-DA-A1HW-06 19 38956933 38956933 C T RYR1 Silent p.L1025L 0.45 TCGA-DA-A1HW-06 19 42839497 42839497 C T MEGF8 Missense_Mutation p.S263F 0.27 deleterious(0.01) benign(0.113) TCGA-DA-A1HW-06 19 4529248 4529248 C T PLIN5 Silent p.K119K 0.52 TCGA-DA-A1HW-06 19 46998608 46998608 G A PNMAL2 Silent p.L39L 0.44 TCGA-DA-A1HW-06 19 50208316 50208316 C T CPT1C Missense_Mutation p.A275V 0.30 tolerated(0.93) possibly_damaging(0.639) TCGA-DA-A1HW-06 19 51446990 51446990 G A KLK5 Missense_Mutation p.S260F 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 19 5455836 5455836 G A ZNRF4 Missense_Mutation p.D112N 0.57 tolerated(0.08) possibly_damaging(0.859) TCGA-DA-A1HW-06 19 54724986 54724986 G A LILRB3 Silent p.A308A 0.55 TCGA-DA-A1HW-06 19 55420724 55420724 G A NCR1 Missense_Mutation p.G159E 0.34 tolerated(0.06) benign(0.21) TCGA-DA-A1HW-06 19 55505685 55505685 G A NLRP2 Silent p.K919K 0.25 TCGA-DA-A1HW-06 19 57335908 57335908 G A PEG3 Missense_Mutation p.P39L 0.31 deleterious(0.03) benign(0.026) TCGA-DA-A1HW-06 19 58213359 58213359 G A ZNF154 Missense_Mutation p.H320Y 0.30 deleterious(0.02) benign(0.158) TCGA-DA-A1HW-06 19 9019292 9019292 G A MUC16 Missense_Mutation p.S12532F 0.35 possibly_damaging(0.763) TCGA-DA-A1HW-06 1 103471820 103471820 T A COL11A1 Missense_Mutation p.R579W 0.40 unknown(0) TCGA-DA-A1HW-06 1 111441775 111441775 G A CD53 Silent p.L206L 0.27 TCGA-DA-A1HW-06 1 111862065 111862065 G A CHIA Silent p.K384K 0.28 TCGA-DA-A1HW-06 1 115454127 115454127 T C SYCP1 Silent p.L485L 0.21 TCGA-DA-A1HW-06 1 12186237 12186237 C T TNFRSF8 Intron 0.31 TCGA-DA-A1HW-06 1 12835246 12835246 G A PRAMEF12 Missense_Mutation p.R79Q 0.29 tolerated(1) benign(0) TCGA-DA-A1HW-06 1 14107476 14107476 T G PRDM2 Silent p.S1062S 0.30 TCGA-DA-A1HW-06 1 145561156 145561156 G A ANKRD35 Missense_Mutation p.E282K 0.26 tolerated(0.36) benign(0.007) TCGA-DA-A1HW-06 1 145561157 145561157 A T ANKRD35 Missense_Mutation p.E282V 0.25 tolerated(0.1) benign(0.014) TCGA-DA-A1HW-06 1 152383020 152383020 T C CRNN Missense_Mutation p.S180G 0.38 deleterious(0.01) possibly_damaging(0.783) TCGA-DA-A1HW-06 1 155013970 155013970 A G DCST1 Missense_Mutation p.E210G 0.26 tolerated(0.16) benign(0.009) TCGA-DA-A1HW-06 1 155823261 155823261 G A GON4L Missense_Mutation p.T104I 0.36 tolerated_low_confidence(0.08) possibly_damaging(0.702) TCGA-DA-A1HW-06 1 156453117 156453118 - GGGGC MEF2D 5'UTR 0.16 TCGA-DA-A1HW-06 1 157771776 157771776 C T FCRL1 Missense_Mutation p.G272E 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-DA-A1HW-06 1 158436017 158436017 C T OR10K1 Silent p.I222I 0.30 TCGA-DA-A1HW-06 1 158576309 158576309 C T OR10Z1 Silent p.L27L 0.27 TCGA-DA-A1HW-06 1 15890475 15890475 C T DNAJC16 Silent p.L464L 0.40 TCGA-DA-A1HW-06 1 160141540 160141540 G A ATP1A4 Missense_Mutation p.G616E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 1 167805774 167805774 C T ADCY10 Missense_Mutation p.E1028K 0.25 tolerated(0.14) benign(0.005) TCGA-DA-A1HW-06 1 171509511 171509511 C T PRRC2C Missense_Mutation p.P967L 0.19 unknown(0) TCGA-DA-A1HW-06 1 173725152 173725152 C T KLHL20 Silent p.I314I 0.23 TCGA-DA-A1HW-06 1 175046806 175046806 C T TNN Silent p.I84I 0.31 TCGA-DA-A1HW-06 1 182845266 182845266 C T DHX9 Missense_Mutation p.P633S 0.33 tolerated(1) benign(0.003) TCGA-DA-A1HW-06 1 196964856 196964856 G A CFHR5 Missense_Mutation p.R206Q 0.33 tolerated(1) benign(0.001) TCGA-DA-A1HW-06 1 201294148 201294148 C T PKP1 Silent p.S659S 0.36 TCGA-DA-A1HW-06 1 204946814 204946814 C T NFASC Nonsense_Mutation p.Q613* 0.25 TCGA-DA-A1HW-06 1 206239499 206239499 C T C1orf186 Silent p.E133E 0.23 TCGA-DA-A1HW-06 1 207643212 207643212 G A CR2 Silent p.Q330Q 0.41 TCGA-DA-A1HW-06 1 208200554 208200554 G A PLXNA2 3'UTR 0.38 TCGA-DA-A1HW-06 1 212799719 212799719 G A FAM71A Silent p.K500K 0.36 TCGA-DA-A1HW-06 1 230898473 230898473 C T CAPN9 Silent p.F159F 0.32 TCGA-DA-A1HW-06 1 237838033 237838033 G A RYR2 Missense_Mutation p.G2906E 0.39 probably_damaging(0.971) TCGA-DA-A1HW-06 1 240656512 240656512 C T GREM2 Silent p.R88R 0.24 TCGA-DA-A1HW-06 1 245849121 245849121 C T KIF26B Missense_Mutation p.P946S 0.30 tolerated(0.19) unknown(0) TCGA-DA-A1HW-06 1 245849122 245849122 C T KIF26B Missense_Mutation p.P946L 0.30 tolerated(0.13) unknown(0) TCGA-DA-A1HW-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.16 TCGA-DA-A1HW-06 1 34663240 34663240 G A C1orf94 Silent p.L245L 0.42 TCGA-DA-A1HW-06 1 3742397 3742397 G T CEP104 Silent p.S763S 0.29 TCGA-DA-A1HW-06 1 39753029 39753029 T C MACF1 Missense_Mutation p.F532S 0.29 possibly_damaging(0.491) TCGA-DA-A1HW-06 1 43296721 43296721 C G ERMAP Missense_Mutation p.S123C 0.29 tolerated(0.08) possibly_damaging(0.635) TCGA-DA-A1HW-06 1 43855557 43855557 C T SZT2 5'Flank 0.36 TCGA-DA-A1HW-06 1 57204318 57204318 G A C1orf168 Missense_Mutation p.S571F 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 1 59125666 59125666 T C MYSM1 3'UTR 0.27 TCGA-DA-A1HW-06 1 66058373 66058373 C T LEPR Silent p.P176P 0.28 TCGA-DA-A1HW-06 1 8418512 8418512 G A RERE Silent p.P1361P 0.24 TCGA-DA-A1HW-06 1 9097624 9097624 C T SLC2A5 3'UTR 0.30 TCGA-DA-A1HW-06 1 9097625 9097625 C T SLC2A5 3'UTR 0.30 TCGA-DA-A1HW-06 1 9322191 9322191 C T H6PD Silent p.T273T 0.35 TCGA-DA-A1HW-06 20 15412057 15412057 C T MACROD2 Missense_Mutation p.P183L 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 20 34079053 34079053 G A CEP250 Missense_Mutation p.E924K 0.12 possibly_damaging(0.906) TCGA-DA-A1HW-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.27 TCGA-DA-A1HW-06 20 34144766 34144766 C T ERGIC3 Missense_Mutation p.S306F 0.41 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HW-06 20 3844945 3844945 C T MAVS Missense_Mutation p.P223L 0.28 deleterious(0) possibly_damaging(0.858) TCGA-DA-A1HW-06 20 45867837 45867837 G A ZMYND8 Missense_Mutation p.P777L 0.27 tolerated_low_confidence(0.07) benign(0.024) TCGA-DA-A1HW-06 20 45867838 45867838 G A ZMYND8 Missense_Mutation p.P777S 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.46) TCGA-DA-A1HW-06 20 47869279 47869279 G A ZNFX1 Missense_Mutation p.P1065L 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 20 47869280 47869280 G A ZNFX1 Missense_Mutation p.P1065S 0.25 tolerated(0.06) probably_damaging(1) TCGA-DA-A1HW-06 20 58519738 58519738 C T FAM217B Missense_Mutation p.S247F 0.27 deleterious(0.04) possibly_damaging(0.724) TCGA-DA-A1HW-06 20 5903238 5903238 G A CHGB Missense_Mutation p.E150K 0.26 tolerated(1) benign(0.01) TCGA-DA-A1HW-06 20 62076679 62076679 G A KCNQ2 Silent p.F142F 0.36 TCGA-DA-A1HW-06 20 62730145 62730145 C T OPRL1 Missense_Mutation p.P369L 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A1HW-06 20 6759224 6759224 G A BMP2 Missense_Mutation p.V227M 0.21 tolerated(0.22) benign(0.372) TCGA-DA-A1HW-06 21 10934106 10934106 C T TPTE Missense_Mutation p.D291N 0.10 tolerated(0.16) possibly_damaging(0.55) TCGA-DA-A1HW-06 21 15884881 15884881 C T SAMSN1 Missense_Mutation p.G166E 0.29 tolerated(0.24) benign(0.034) TCGA-DA-A1HW-06 21 17163931 17163931 C T USP25 Missense_Mutation p.P168L 0.38 deleterious(0) possibly_damaging(0.908) TCGA-DA-A1HW-06 21 34655546 34655546 G A IL10RB Missense_Mutation p.E216K 0.27 tolerated(0.11) benign(0.006) TCGA-DA-A1HW-06 21 41465752 41465752 G A DSCAM Missense_Mutation p.P1249L 0.33 tolerated(0.05) benign(0.14) TCGA-DA-A1HW-06 21 45678547 45678547 C T DNMT3L Silent p.L125L 0.25 TCGA-DA-A1HW-06 22 19706076 19706076 G A SEPT5 Intron 0.28 TCGA-DA-A1HW-06 22 21377588 21377588 C T P2RX6 Silent p.D221D 0.30 TCGA-DA-A1HW-06 22 22707592 22707592 G A IGLV5-48 Silent p.K60K 0.29 TCGA-DA-A1HW-06 22 26165193 26165193 G A MYO18B Nonsense_Mutation p.W437* 0.25 TCGA-DA-A1HW-06 22 29837493 29837493 C T RFPL1 Intron 0.40 TCGA-DA-A1HW-06 22 30735185 30735185 G A SF3A1 Silent p.F477F 0.31 TCGA-DA-A1HW-06 22 45970515 45970515 G A FBLN1 Missense_Mutation p.E608K 0.55 tolerated(0.2) possibly_damaging(0.651) TCGA-DA-A1HW-06 22 50660294 50660294 G A TUBGCP6 Missense_Mutation p.P832S 0.19 tolerated(0.73) benign(0.14) TCGA-DA-A1HW-06 2 103274316 103274316 G A SLC9A2 Missense_Mutation p.E195K 0.30 tolerated(0.45) possibly_damaging(0.558) TCGA-DA-A1HW-06 2 108917356 108917356 C T SULT1C2 Silent p.L125L 0.30 TCGA-DA-A1HW-06 2 130792768 130792768 G A FAR2P1 5'Flank 0.14 TCGA-DA-A1HW-06 2 132021940 132021940 C T POTEE Missense_Mutation p.S971F 0.15 deleterious_low_confidence(0.03) probably_damaging(0.987) TCGA-DA-A1HW-06 2 135745354 135745354 T C MAP3K19 Missense_Mutation p.N363S 0.30 tolerated(0.18) benign(0.001) TCGA-DA-A1HW-06 2 138421075 138421075 G A THSD7B Silent p.G1530G 0.19 TCGA-DA-A1HW-06 2 167273342 167273342 G A SCN7A Missense_Mutation p.P1097S 0.34 tolerated(0.57) benign(0.024) TCGA-DA-A1HW-06 2 179437859 179437859 C T TTN Missense_Mutation p.D24334N 0.24 TCGA-DA-A1HW-06 2 179438868 179438868 G A TTN Silent p.F23997F 0.23 TCGA-DA-A1HW-06 2 179452496 179452496 C T TTN Missense_Mutation p.M21180I 0.36 TCGA-DA-A1HW-06 2 179495596 179495596 C T TTN Missense_Mutation p.E14697K 0.20 TCGA-DA-A1HW-06 2 179604664 179604664 G A TTN Silent p.I4432I 0.25 TCGA-DA-A1HW-06 2 179610653 179610653 C T TTN Intron 0.38 TCGA-DA-A1HW-06 2 185801921 185801921 A T ZNF804A Nonsense_Mutation p.K600* 0.36 TCGA-DA-A1HW-06 2 196801382 196801382 G A DNAH7 Silent p.F1071F 0.29 TCGA-DA-A1HW-06 2 197090520 197090520 G A HECW2 Missense_Mutation p.P1331L 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HW-06 2 197943503 197943503 G A ANKRD44 Missense_Mutation p.P500L 0.30 deleterious(0) possibly_damaging(0.767) TCGA-DA-A1HW-06 2 198365916 198365916 T C HSPE1-MOB4 Missense_Mutation p.V41A 0.31 tolerated(0.32) benign(0.063) TCGA-DA-A1HW-06 2 198949322 198949322 G A PLCL1 Missense_Mutation p.E361K 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 2 218925402 218925402 C T CXCR2P1 RNA 0.16 TCGA-DA-A1HW-06 2 219000488 219000488 C T CXCR2 Missense_Mutation p.R322C 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1HW-06 2 220338231 220338231 A G SPEG Missense_Mutation p.T1385A 0.38 benign(0) TCGA-DA-A1HW-06 2 220356966 220356966 C T SPEG Missense_Mutation p.L3199F 0.26 probably_damaging(0.999) TCGA-DA-A1HW-06 2 229890441 229890441 C T PID1 Silent p.R218R 0.38 TCGA-DA-A1HW-06 2 231973942 231973942 C T HTR2B Silent p.Q245Q 0.29 TCGA-DA-A1HW-06 2 234184565 234184565 C T ATG16L1 Intron 0.39 TCGA-DA-A1HW-06 2 236708045 236708045 C T AGAP1 Missense_Mutation p.S279F 0.20 deleterious(0) possibly_damaging(0.587) TCGA-DA-A1HW-06 2 25141322 25141324 AGG - ADCY3 In_Frame_Del p.S178del 0.51 TCGA-DA-A1HW-06 2 26533850 26533850 C T GPR113 Missense_Mutation p.E916K 0.40 tolerated(0.59) benign(0.016) TCGA-DA-A1HW-06 2 30985998 30985998 C T CAPN13 Missense_Mutation p.E242K 0.67 tolerated(0.41) benign(0.05) TCGA-DA-A1HW-06 2 32352039 32352039 C T SPAST Missense_Mutation p.P374L 0.22 tolerated(0.06) probably_damaging(1) TCGA-DA-A1HW-06 2 54887332 54887332 C T SPTBN1 Intron 0.42 TCGA-DA-A1HW-06 2 68753283 68753283 C T APLF Missense_Mutation p.S238L 0.11 tolerated(0.11) benign(0.418) TCGA-DA-A1HW-06 2 77746778 77746778 T C LRRTM4 Missense_Mutation p.I73V 0.24 deleterious(0.05) benign(0.173) TCGA-DA-A1HW-06 2 85770138 85770138 C T MAT2A Missense_Mutation p.R356C 0.41 tolerated(0.05) possibly_damaging(0.615) TCGA-DA-A1HW-06 2 95963201 95963201 G A KCNIP3 Silent p.K5K 0.30 TCGA-DA-A1HW-06 2 98382998 98382998 G A TMEM131 Missense_Mutation p.P1506S 0.24 tolerated_low_confidence(0.81) benign(0.001) TCGA-DA-A1HW-06 2 99012839 99012839 G A CNGA3 Missense_Mutation p.M402I 0.35 deleterious(0.02) benign(0.074) TCGA-DA-A1HW-06 3 105266104 105266104 G A ALCAM Missense_Mutation p.E406K 0.47 tolerated(0.71) benign(0.009) TCGA-DA-A1HW-06 3 113374606 113374606 G A KIAA2018 Missense_Mutation p.P1975S 0.31 benign(0.004) TCGA-DA-A1HW-06 3 113377038 113377038 G A KIAA2018 Missense_Mutation p.P1164L 0.31 benign(0.149) TCGA-DA-A1HW-06 3 121641931 121641931 C T SLC15A2 Silent p.F304F 0.28 TCGA-DA-A1HW-06 3 12421374 12421374 G A PPARG Missense_Mutation p.R85K 0.49 tolerated_low_confidence(0.84) benign(0.183) TCGA-DA-A1HW-06 3 125877271 125877271 G A ALDH1L1 Silent p.H123H 0.23 TCGA-DA-A1HW-06 3 14174406 14174406 C T TMEM43 Silent p.F161F 0.50 TCGA-DA-A1HW-06 3 169999014 169999014 C T PRKCI Missense_Mutation p.L315F 0.39 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HW-06 3 183209742 183209742 C T KLHL6 Silent p.R613R 0.35 TCGA-DA-A1HW-06 3 191861750 191861750 G A FGF12 3'UTR 0.30 TCGA-DA-A1HW-06 3 192053236 192053236 G A FGF12 Missense_Mutation p.P110S 0.17 tolerated(0.3) probably_damaging(0.989) TCGA-DA-A1HW-06 3 193019021 193019021 G A ATP13A5 Silent p.I918I 0.41 TCGA-DA-A1HW-06 3 32859584 32859584 C T TRIM71 Silent p.F4F 0.48 TCGA-DA-A1HW-06 3 46485063 46485063 G A LTF Silent p.F508F 0.44 TCGA-DA-A1HW-06 3 46904827 46904827 C T MYL3 Silent p.K18K 0.55 TCGA-DA-A1HW-06 3 47162509 47162509 G A SETD2 Missense_Mutation p.S1206F 0.43 deleterious_low_confidence(0.04) benign(0.006) TCGA-DA-A1HW-06 3 52554934 52554934 G A STAB1 Missense_Mutation p.G1941S 0.57 tolerated(1) benign(0.001) TCGA-DA-A1HW-06 3 53707811 53707811 C T CACNA1D Silent p.F396F 0.41 TCGA-DA-A1HW-06 3 71247393 71247393 C T FOXP1 Missense_Mutation p.G47E 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DA-A1HW-06 4 107846995 107846995 G A DKK2 Nonsense_Mutation p.R112* 0.40 TCGA-DA-A1HW-06 4 123161105 123161105 C A KIAA1109 Missense_Mutation p.T1423N 0.46 benign(0.043) TCGA-DA-A1HW-06 4 1347001 1347001 C T UVSSA Missense_Mutation p.P245L 0.47 tolerated(0.75) benign(0.002) TCGA-DA-A1HW-06 4 177650814 177650814 C T VEGFC Nonsense_Mutation p.W78* 0.50 TCGA-DA-A1HW-06 4 21305511 21305511 C T KCNIP4 Intron 0.60 TCGA-DA-A1HW-06 4 55956161 55956161 C T KDR Missense_Mutation p.D1052N 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 4 66280049 66280049 C T EPHA5 Missense_Mutation p.G547D 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-DA-A1HW-06 4 74309109 74309109 C T AFP Nonsense_Mutation p.Q221* 0.23 TCGA-DA-A1HW-06 4 77288469 77288469 C T CCDC158 Missense_Mutation p.R603Q 0.27 deleterious(0.02) benign(0.077) TCGA-DA-A1HW-06 4 84377176 84377176 G A MRPS18C 5'UTR 0.48 TCGA-DA-A1HW-06 4 8467171 8467171 C T TRMT44 Silent p.S459S 0.51 TCGA-DA-A1HW-06 4 88356186 88356186 C T NUDT9 Missense_Mutation p.S54F 0.24 tolerated(0.19) benign(0.013) TCGA-DA-A1HW-06 5 109125208 109125208 A G MAN2A1 Missense_Mutation p.I641M 0.27 deleterious(0.01) benign(0.17) TCGA-DA-A1HW-06 5 109181655 109181655 T G MAN2A1 Missense_Mutation p.H930Q 0.56 tolerated(0.3) benign(0.232) TCGA-DA-A1HW-06 5 121488488 121488488 C T ZNF474 Missense_Mutation p.P268L 0.58 tolerated(0.39) benign(0.006) TCGA-DA-A1HW-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.51 tolerated(0.09) possibly_damaging(0.574) TCGA-DA-A1HW-06 5 132150952 132150952 C A SOWAHA Missense_Mutation p.P547T 0.58 deleterious_low_confidence(0.03) benign(0.296) TCGA-DA-A1HW-06 5 134086595 134086595 C T CAMLG Silent p.I282I 0.39 TCGA-DA-A1HW-06 5 13737604 13737604 C T DNAH5 Missense_Mutation p.E3738K 0.43 possibly_damaging(0.621) TCGA-DA-A1HW-06 5 13753548 13753548 G A DNAH5 Missense_Mutation p.P3556S 0.20 possibly_damaging(0.641) TCGA-DA-A1HW-06 5 140076761 140076761 C T HARS2 Missense_Mutation p.L323F 0.44 deleterious(0) possibly_damaging(0.533) TCGA-DA-A1HW-06 5 140579362 140579362 G A PCDHB11 Silent p.G5G 0.52 TCGA-DA-A1HW-06 5 140615806 140615806 C T PCDHB18 RNA 0.45 TCGA-DA-A1HW-06 5 140750125 140750125 G A PCDHGB3 Missense_Mutation p.G55E 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-DA-A1HW-06 5 141336315 141336315 G A PCDH12 Missense_Mutation p.P368S 0.44 deleterious(0.04) probably_damaging(1) TCGA-DA-A1HW-06 5 147040531 147040531 C T JAKMIP2 Missense_Mutation p.E203K 0.36 deleterious(0) probably_damaging(0.969) TCGA-DA-A1HW-06 5 158697388 158697388 C T UBLCP1 Silent p.P89P 0.36 TCGA-DA-A1HW-06 5 162944660 162944660 C T MAT2B Missense_Mutation p.P272S 0.58 tolerated(0.19) benign(0.409) TCGA-DA-A1HW-06 5 19503127 19503127 G A CDH18 Missense_Mutation p.P535L 0.31 tolerated(0.12) probably_damaging(0.999) TCGA-DA-A1HW-06 5 31267675 31267675 C A CDH6 Missense_Mutation p.P32Q 0.38 tolerated(0.34) benign(0.017) TCGA-DA-A1HW-06 5 32400223 32400223 A C ZFR Silent p.A534A 0.19 TCGA-DA-A1HW-06 5 35040730 35040730 G A AGXT2 Missense_Mutation p.H43Y 0.36 tolerated(0.18) benign(0.011) TCGA-DA-A1HW-06 5 43628326 43628326 G A NNT Silent p.K267K 0.25 TCGA-DA-A1HW-06 5 65350368 65350368 C T ERBB2IP Silent p.I1074I 0.46 TCGA-DA-A1HW-06 5 7414758 7414758 C T ADCY2 Silent p.L95L 0.13 TCGA-DA-A1HW-06 6 10942729 10942729 C T SYCP2L Silent p.S617S 0.22 TCGA-DA-A1HW-06 6 110567148 110567148 C T METTL24 3'UTR 0.23 TCGA-DA-A1HW-06 6 112535069 112535069 A G LAMA4 Intron 0.42 TCGA-DA-A1HW-06 6 117127921 117127921 T C GPRC6A Missense_Mutation p.N316S 0.21 tolerated(0.1) benign(0.297) TCGA-DA-A1HW-06 6 117724339 117724339 G A ROS1 Silent p.S180S 0.31 TCGA-DA-A1HW-06 6 121625524 121625524 G A TBC1D32 Missense_Mutation p.R308C 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 6 124604234 124604234 C T NKAIN2 Silent p.I46I 0.30 TCGA-DA-A1HW-06 6 12718957 12718957 C T PHACTR1 5'UTR 0.37 TCGA-DA-A1HW-06 6 129759851 129759851 G A LAMA2 Missense_Mutation p.G2010E 0.35 tolerated(0.63) benign(0.002) TCGA-DA-A1HW-06 6 131520696 131520696 C T AKAP7 Missense_Mutation p.P229S 0.22 tolerated(0.25) probably_damaging(0.909) TCGA-DA-A1HW-06 6 131927666 131927666 G A MED23 Silent p.N440N 0.39 TCGA-DA-A1HW-06 6 136934291 136934291 G A MAP3K5 Silent p.L794L 0.26 TCGA-DA-A1HW-06 6 139235874 139235887 GCAACAACTCCAGC - REPS1 Frame_Shift_Del p.A577Pfs*33 0.13 TCGA-DA-A1HW-06 6 161071527 161071527 C T LPA Missense_Mutation p.A18T 0.33 tolerated_low_confidence(0.48) benign(0.047) TCGA-DA-A1HW-06 6 16254963 16254963 T C GMPR Silent p.I154I 0.40 TCGA-DA-A1HW-06 6 165715235 165715235 G A C6orf118 Silent p.S192S 0.37 TCGA-DA-A1HW-06 6 25811930 25811930 T G SLC17A1 Silent p.S322S 0.28 TCGA-DA-A1HW-06 6 26252092 26252092 G A HIST1H2BH Missense_Mutation p.E72K 0.29 deleterious_low_confidence(0.03) benign(0.088) TCGA-DA-A1HW-06 6 26505364 26505364 G A BTN1A1 Silent p.A213A 0.36 TCGA-DA-A1HW-06 6 27215814 27215814 G A PRSS16 Missense_Mutation p.R75Q 0.18 tolerated(0.14) benign(0.026) TCGA-DA-A1HW-06 6 28227309 28227309 C T NKAPL Missense_Mutation p.P54S 0.28 tolerated(0.16) unknown(0) TCGA-DA-A1HW-06 6 28227310 28227310 C T NKAPL Missense_Mutation p.P54L 0.27 tolerated(0.06) unknown(0) TCGA-DA-A1HW-06 6 30104739 30104739 G A TRIM40 5'Flank 0.21 TCGA-DA-A1HW-06 6 31933721 31933721 C T SKIV2L Silent p.P711P 0.29 TCGA-DA-A1HW-06 6 32032745 32032745 C T TNXB Missense_Mutation p.D2232N 0.33 probably_damaging(0.958) TCGA-DA-A1HW-06 6 32487164 32487164 G A HLA-DRB5 Missense_Mutation p.P212L 0.27 deleterious(0) probably_damaging(0.915) TCGA-DA-A1HW-06 6 32713056 32713056 T C HLA-DQA2 Missense_Mutation p.V68A 0.27 deleterious(0.05) benign(0.048) TCGA-DA-A1HW-06 6 33145223 33145223 C T COL11A2 Missense_Mutation p.G560E 0.36 probably_damaging(0.969) TCGA-DA-A1HW-06 6 33639930 33639930 G A ITPR3 Silent p.L951L 0.27 TCGA-DA-A1HW-06 6 33703227 33703227 G A IP6K3 Silent p.A9A 0.26 TCGA-DA-A1HW-06 6 33768863 33768863 G A MLN Silent p.F26F 0.31 TCGA-DA-A1HW-06 6 35280207 35280207 C T DEF6 Silent p.F184F 0.25 TCGA-DA-A1HW-06 6 35280208 35280208 C T DEF6 Silent p.L185L 0.25 TCGA-DA-A1HW-06 6 35478645 35478645 G A TULP1 Silent p.G164G 0.35 TCGA-DA-A1HW-06 6 38899763 38899763 G A DNAH8 Silent p.E3600E 0.22 TCGA-DA-A1HW-06 6 43034831 43034831 C T KLC4 Intron 0.17 TCGA-DA-A1HW-06 6 43406504 43406504 G A ABCC10 Missense_Mutation p.E700K 0.36 tolerated(0.16) possibly_damaging(0.856) TCGA-DA-A1HW-06 6 47682748 47682748 T C GPR115 Silent p.I589I 0.37 TCGA-DA-A1HW-06 6 49986688 49986688 C T DEFB110 3'UTR 0.38 TCGA-DA-A1HW-06 6 54805208 54805208 G A FAM83B Missense_Mutation p.R480Q 0.33 deleterious(0.03) possibly_damaging(0.55) TCGA-DA-A1HW-06 6 56328382 56328382 G A DST Missense_Mutation p.P5000L 0.39 benign(0.094) TCGA-DA-A1HW-06 7 100386959 100386959 G A ZAN Silent p.R2448R 0.25 TCGA-DA-A1HW-06 7 100686452 100686452 C T MUC17 Missense_Mutation p.P3919S 0.32 benign(0) TCGA-DA-A1HW-06 7 100687013 100687013 C T MUC17 Missense_Mutation p.P4106S 0.32 unknown(0) TCGA-DA-A1HW-06 7 100687014 100687014 C T MUC17 Missense_Mutation p.P4106L 0.34 unknown(0) TCGA-DA-A1HW-06 7 105656440 105656440 C T CDHR3 Silent p.S465S 0.43 TCGA-DA-A1HW-06 7 107340578 107340578 C T SLC26A4 Silent p.F555F 0.30 TCGA-DA-A1HW-06 7 117062383 117062383 C T ASZ1 Missense_Mutation p.G79E 0.46 tolerated(0.21) probably_damaging(0.951) TCGA-DA-A1HW-06 7 117307212 117307212 C T CFTR 3'UTR 0.38 TCGA-DA-A1HW-06 7 123508936 123508936 C T HYAL4 Silent p.I203I 0.47 TCGA-DA-A1HW-06 7 128485029 128485029 C T FLNC Silent p.V1170V 0.15 TCGA-DA-A1HW-06 7 138305866 138305866 C T SVOPL Silent p.T426T 0.45 TCGA-DA-A1HW-06 7 138347878 138347878 C T SVOPL Missense_Mutation p.G96S 0.45 deleterious(0) probably_damaging(0.933) TCGA-DA-A1HW-06 7 138819411 138819411 G A TTC26 Missense_Mutation p.R5K 0.56 tolerated(0.13) possibly_damaging(0.571) TCGA-DA-A1HW-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-DA-A1HW-06 7 141536257 141536257 C T PRSS37 Missense_Mutation p.G216S 0.22 tolerated(0.12) probably_damaging(0.975) TCGA-DA-A1HW-06 7 141619380 141619380 G A OR9A4 Silent p.R235R 0.17 TCGA-DA-A1HW-06 7 142013374 142013374 G A TRBV4-1 Missense_Mutation p.E77K 0.47 tolerated(0.11) benign(0.027) TCGA-DA-A1HW-06 7 142021085 142021085 G A TRBV5-1 Missense_Mutation p.G22E 0.12 tolerated(0.2) benign(0.162) TCGA-DA-A1HW-06 7 142481160 142481160 C T PRSS3P2 RNA 0.77 TCGA-DA-A1HW-06 7 14880876 14880876 C T DGKB Missense_Mutation p.E5K 0.25 tolerated(0.58) benign(0.15) TCGA-DA-A1HW-06 7 150095105 150095105 C T ZNF775 Silent p.S512S 0.33 TCGA-DA-A1HW-06 7 152346130 152346130 A G XRCC2 Missense_Mutation p.I147T 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-DA-A1HW-06 7 157926650 157926650 C T PTPRN2 Silent p.R425R 0.47 TCGA-DA-A1HW-06 7 18975497 18975497 G A HDAC9 Missense_Mutation p.G957R 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 7 23808674 23808674 G A STK31 Missense_Mutation p.E493K 0.49 tolerated(0.07) benign(0.099) TCGA-DA-A1HW-06 7 34192725 34192725 C T BMPER Missense_Mutation p.A633V 0.45 deleterious(0) probably_damaging(0.983) TCGA-DA-A1HW-06 7 44578891 44578891 C T NPC1L1 Missense_Mutation p.G369S 0.51 deleterious(0) probably_damaging(0.97) TCGA-DA-A1HW-06 7 48269424 48269424 C T ABCA13 Missense_Mutation p.S212F 0.45 benign(0.063) TCGA-DA-A1HW-06 7 63720662 63720662 C T ZNF679 Missense_Mutation p.H35Y 0.34 deleterious(0.04) benign(0.14) TCGA-DA-A1HW-06 7 72663984 72663984 C T GTF2IRD2P1 RNA 0.32 TCGA-DA-A1HW-06 7 86415877 86415877 G A GRM3 Missense_Mutation p.D257N 0.33 tolerated(0.06) probably_damaging(0.916) TCGA-DA-A1HW-06 7 86468876 86468876 C T GRM3 Silent p.F682F 0.27 TCGA-DA-A1HW-06 7 86509766 86509766 C T KIAA1324L 3'UTR 0.19 TCGA-DA-A1HW-06 7 99258142 99258142 C T CYP3A5 Missense_Mutation p.D336N 0.28 deleterious(0.02) possibly_damaging(0.664) TCGA-DA-A1HW-06 7 99621901 99621901 C T ZKSCAN1 Missense_Mutation p.S184F 0.43 deleterious(0.01) benign(0.305) TCGA-DA-A1HW-06 8 105026819 105026819 C T RIMS2 Missense_Mutation p.P1104S 0.23 tolerated_low_confidence(0.34) probably_damaging(0.992) TCGA-DA-A1HW-06 8 144940720 144940720 C T EPPK1 Silent p.K2234K 0.24 TCGA-DA-A1HW-06 8 145052167 145052167 G A PARP10 Missense_Mutation p.P880L 0.69 deleterious(0.04) benign(0.142) TCGA-DA-A1HW-06 8 17094725 17094725 G A CNOT7 Missense_Mutation p.H157Y 0.21 deleterious(0) possibly_damaging(0.549) TCGA-DA-A1HW-06 8 23174479 23174479 C T LOXL2 Missense_Mutation p.G540E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 8 30889984 30889984 C T PURG Silent p.L105L 0.31 TCGA-DA-A1HW-06 8 38677043 38677043 C T TACC1 Missense_Mutation p.S94L 0.31 tolerated(0.64) benign(0.005) TCGA-DA-A1HW-06 8 39089651 39089651 G A ADAM32 Nonsense_Mutation p.W544* 0.33 TCGA-DA-A1HW-06 8 48855781 48855781 G A PRKDC Silent p.S318S 0.31 TCGA-DA-A1HW-06 8 51314860 51314860 G T SNTG1 Nonsense_Mutation p.E40* 0.32 TCGA-DA-A1HW-06 8 52359701 52359701 C T PXDNL Missense_Mutation p.G463D 0.31 tolerated(0.63) benign(0.033) TCGA-DA-A1HW-06 8 67963533 67963533 G A COPS5 Missense_Mutation p.R235C 0.30 tolerated(0.09) benign(0.002) TCGA-DA-A1HW-06 8 72127951 72127951 G A EYA1 Missense_Mutation p.P458L 0.26 deleterious(0) probably_damaging(0.963) TCGA-DA-A1HW-06 8 95503846 95503848 GAA AT KIAA1429 Frame_Shift_Del p.F1700Ifs*136 0.27 TCGA-DA-A1HW-06 9 104432476 104432477 - ACAT GRIN3A Frame_Shift_Ins p.W740Mfs*33 0.29 TCGA-DA-A1HW-06 9 104432572 104432572 G A GRIN3A Nonsense_Mutation p.R708* 0.23 TCGA-DA-A1HW-06 9 105765445 105765445 C T CYLC2 Missense_Mutation p.S27L 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-DA-A1HW-06 9 113431248 113431248 G A MUSK Missense_Mutation p.E22K 0.15 tolerated_low_confidence(0.15) benign(0.14) TCGA-DA-A1HW-06 9 125329868 125329868 G A OR1L8 Silent p.L297L 0.41 TCGA-DA-A1HW-06 9 125330013 125330013 C T OR1L8 Silent p.V248V 0.55 TCGA-DA-A1HW-06 9 131671262 131671262 C T LRRC8A Missense_Mutation p.P607S 0.18 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HW-06 9 133578458 133578458 C T EXOSC2 Nonsense_Mutation p.R231* 0.15 TCGA-DA-A1HW-06 9 135203263 135203263 G T SETX Missense_Mutation p.T1241N 0.28 tolerated(0.21) benign(0.003) TCGA-DA-A1HW-06 9 135277771 135277771 C T TTF1 Silent p.Q146Q 0.35 TCGA-DA-A1HW-06 9 137734038 137734038 C T COL5A1 Silent p.I1802I 0.16 TCGA-DA-A1HW-06 9 14722582 14722582 A T CER1 Missense_Mutation p.L30H 0.30 tolerated(0.37) possibly_damaging(0.628) TCGA-DA-A1HW-06 9 19435068 19435068 C T ACER2 Silent p.I163I 0.39 TCGA-DA-A1HW-06 9 4125859 4125859 C T GLIS3 Missense_Mutation p.M157I 0.49 tolerated(0.32) probably_damaging(0.946) TCGA-DA-A1HW-06 9 43627368 43627368 A G SPATA31A6 Missense_Mutation p.L440S 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-DA-A1HW-06 9 711620 711620 C T KANK1 Missense_Mutation p.P285L 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 9 71628516 71628516 G A PRKACG Missense_Mutation p.H165Y 0.37 tolerated(1) benign(0.001) TCGA-DA-A1HW-06 9 79118633 79118633 C T GCNT1 3'UTR 0.56 TCGA-DA-A1HW-06 9 95738973 95738973 G A FGD3 Silent p.K145K 0.31 TCGA-DA-A1HW-06 X 106064139 106064139 G A TBC1D8B Missense_Mutation p.D92N 0.24 deleterious(0) benign(0.081) TCGA-DA-A1HW-06 X 117814593 117814593 C T DOCK11 Missense_Mutation p.T1870I 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A1HW-06 X 118783980 118783980 C T SEPT6 Missense_Mutation p.E204K 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1HW-06 X 118979221 118979221 G C UPF3B Missense_Mutation p.Q137E 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1HW-06 X 123517893 123517893 C T TENM1 Silent p.S2296S 0.34 TCGA-DA-A1HW-06 X 129804055 129804055 G A ENOX2 Missense_Mutation p.A222V 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-DA-A1HW-06 X 135431704 135431704 C T GPR112 Missense_Mutation p.P1947S 0.23 tolerated(0.1) benign(0.144) TCGA-DA-A1HW-06 X 139865895 139865895 C T CDR1 Missense_Mutation p.G213R 0.33 tolerated(0.32) probably_damaging(0.979) TCGA-DA-A1HW-06 X 139866673 139866673 C T CDR1 5'UTR 0.32 TCGA-DA-A1HW-06 X 148044401 148044401 C T AFF2 Silent p.I949I 0.34 TCGA-DA-A1HW-06 X 151283959 151283959 G A RP11-1007I13.4 RNA 0.35 TCGA-DA-A1HW-06 X 153220575 153220575 G A HCFC1 Missense_Mutation p.T1092I 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DA-A1HW-06 X 153696822 153696822 G A PLXNA3 Silent p.T1380T 0.23 TCGA-DA-A1HW-06 X 18264805 18264805 C T SCML2 Missense_Mutation p.D572N 0.29 tolerated(0.6) benign(0.001) TCGA-DA-A1HW-06 X 32235169 32235169 C T DMD Missense_Mutation p.R2101K 0.14 benign(0.14) TCGA-DA-A1HW-06 X 32328381 32328381 C T DMD Missense_Mutation p.E1979K 0.19 possibly_damaging(0.486) TCGA-DA-A1HW-06 X 34961617 34961617 C T FAM47B Silent p.L223L 0.33 TCGA-DA-A1HW-06 X 3530319 3530319 G A PRKX Silent p.F333F 0.33 TCGA-DA-A1HW-06 X 46532037 46532037 G A SLC9A7 Missense_Mutation p.S210F 0.29 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HW-06 X 47083085 47083085 C T CDK16 Silent p.D117D 0.31 TCGA-DA-A1HW-06 X 49069183 49069183 G A CACNA1F Missense_Mutation p.L1307F 0.39 deleterious(0) probably_damaging(0.982) TCGA-DA-A1HW-06 X 49855487 49855487 C T CLCN5 Silent p.I768I 0.31 TCGA-DA-A1HW-06 X 52896285 52896285 G A XAGE3 Intron 0.24 TCGA-DA-A1HW-06 X 53654416 53654416 C T HUWE1 Silent p.K478K 0.31 TCGA-DA-A1HW-06 X 54470860 54470860 G A TSR2 Silent p.T151T 0.41 TCGA-DA-A1HW-06 X 62974267 62974267 C T ARHGEF9 5'UTR 0.19 TCGA-DA-A1HW-06 X 70464712 70464712 G A ZMYM3 Silent p.F1013F 0.28 TCGA-DA-A1HW-06 X 71684536 71684536 G A HDAC8 Silent p.V261V 0.34 TCGA-DA-A1HW-06 X 77369647 77369647 C T PGK1 Missense_Mutation p.S136F 0.36 deleterious(0) possibly_damaging(0.838) TCGA-DA-A1HW-06 X 83599324 83599324 C T HDX Missense_Mutation p.E532K 0.26 tolerated(0.11) benign(0.081) TCGA-DA-A1HW-06 X 89177429 89177429 G A TGIF2LX Silent p.Q115Q 0.39 TCGA-DA-A1HW-06 X 99921834 99921834 G A SRPX2 Missense_Mutation p.E289K 0.38 deleterious(0.03) benign(0.259) TCGA-DA-A1HY-06 10 101980384 101980384 T C CHUK Silent p.L145L 0.48 TCGA-DA-A1HY-06 10 102743797 102743797 G A SEMA4G Missense_Mutation p.G814E 0.15 tolerated(0.27) possibly_damaging(0.798) TCGA-DA-A1HY-06 10 104162147 104162147 C T NFKB2 3'UTR 0.36 TCGA-DA-A1HY-06 10 104557747 104557747 T C WBP1L Intron 0.29 TCGA-DA-A1HY-06 10 104629327 104629327 C T AS3MT 5'UTR 0.64 TCGA-DA-A1HY-06 10 104816663 104816663 C T CNNM2 Missense_Mutation p.P672L 0.25 deleterious(0.03) benign(0.079) TCGA-DA-A1HY-06 10 105953602 105953602 C T WDR96 Intron 0.18 TCGA-DA-A1HY-06 10 105953603 105953603 C T WDR96 Intron 0.19 TCGA-DA-A1HY-06 10 118364911 118364911 C T PNLIPRP1 Missense_Mutation p.P396S 0.23 tolerated(0.07) benign(0.231) TCGA-DA-A1HY-06 10 118434800 118434800 G A HSPA12A Missense_Mutation p.P507L 0.14 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 10 121275051 121275051 G A RGS10 Silent p.H123H 0.41 TCGA-DA-A1HY-06 10 123670484 123670484 C T ATE1 Missense_Mutation p.G174R 0.50 tolerated(0.41) benign(0.003) TCGA-DA-A1HY-06 10 124066713 124066713 C T BTBD16 Silent p.T267T 0.21 TCGA-DA-A1HY-06 10 124351962 124351962 G A DMBT1 Missense_Mutation p.G784E 0.42 tolerated(0.09) unknown(0) TCGA-DA-A1HY-06 10 135111499 135111499 G A TUBGCP2 Silent p.F191F 0.22 TCGA-DA-A1HY-06 10 135347332 135347332 G A CYP2E1 Missense_Mutation p.G300R 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1HY-06 10 21101806 21101806 G A NEBL Missense_Mutation p.P804S 0.45 deleterious(0) probably_damaging(0.912) TCGA-DA-A1HY-06 10 25886955 25886955 G A GPR158 Silent p.G800G 0.40 TCGA-DA-A1HY-06 10 27822666 27822666 T C RAB18 Missense_Mutation p.Y88H 0.41 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 10 28151489 28151490 TT C ARMC4 Frame_Shift_Del p.K891Sfs*18 0.30 TCGA-DA-A1HY-06 10 28272896 28272896 G A ARMC4 Missense_Mutation p.S232L 0.34 deleterious(0.01) possibly_damaging(0.477) TCGA-DA-A1HY-06 10 37508235 37508235 C T ANKRD30A Missense_Mutation p.H1143Y 0.49 deleterious(0.01) benign(0.403) TCGA-DA-A1HY-06 10 38242045 38242045 G A ZNF25 Silent p.F127F 0.45 TCGA-DA-A1HY-06 10 44052973 44052973 C T ZNF239 Silent p.G185G 0.41 TCGA-DA-A1HY-06 10 45430207 45430207 C G TMEM72 Missense_Mutation p.D151E 0.40 deleterious(0) possibly_damaging(0.82) TCGA-DA-A1HY-06 10 5203833 5203833 G A AKR1CL1 Missense_Mutation p.P122S 0.57 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 10 55955504 55955504 G A PCDH15 Missense_Mutation p.S415L 0.30 tolerated(0.48) benign(0.271) TCGA-DA-A1HY-06 10 56077108 56077108 G A PCDH15 Missense_Mutation p.P267S 0.47 tolerated(0.14) probably_damaging(1) TCGA-DA-A1HY-06 10 61831470 61831470 C T ANK3 Missense_Mutation p.G3057R 0.54 probably_damaging(0.998) TCGA-DA-A1HY-06 10 71243542 71243542 C T TSPAN15 Silent p.I64I 0.44 TCGA-DA-A1HY-06 10 72195531 72195531 C T NODAL Missense_Mutation p.M134I 0.32 deleterious(0.03) benign(0.181) TCGA-DA-A1HY-06 10 75407925 75407925 C T SYNPO2L Silent p.A495A 0.19 TCGA-DA-A1HY-06 10 79793610 79793610 G A RPS24 5'UTR 0.41 TCGA-DA-A1HY-06 10 88428503 88428503 G A LDB3 Missense_Mutation p.G19R 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 10 94733881 94733881 T A EXOC6 Silent p.L615L 0.44 TCGA-DA-A1HY-06 10 95107398 95107398 C T MYOF Missense_Mutation p.E1409K 0.43 tolerated(0.27) benign(0.045) TCGA-DA-A1HY-06 10 95557277 95557277 C T LGI1 Missense_Mutation p.S464L 0.39 tolerated(0.44) benign(0.002) TCGA-DA-A1HY-06 10 96708970 96708970 G A CYP2C9 Missense_Mutation p.E250K 0.18 tolerated(0.08) benign(0.137) TCGA-DA-A1HY-06 10 96748801 96748801 C T CYP2C9 3'UTR 0.36 TCGA-DA-A1HY-06 10 96997712 96997712 A G PDLIM1 Silent p.G320G 0.17 TCGA-DA-A1HY-06 10 97442431 97442431 G A TCTN3 Missense_Mutation p.L477F 0.38 tolerated(0.16) benign(0.111) TCGA-DA-A1HY-06 10 98064252 98064252 C T DNTT 5'UTR 0.43 TCGA-DA-A1HY-06 10 98129906 98129906 C T TLL2 Silent p.E943E 0.42 TCGA-DA-A1HY-06 10 98362054 98362054 C T PIK3AP1 Silent p.P781P 0.37 TCGA-DA-A1HY-06 11 102480636 102480636 C T MMP20 Missense_Mutation p.G217S 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A1HY-06 11 103814348 103814348 C T PDGFD Missense_Mutation p.D202N 0.33 tolerated(0.15) benign(0.021) TCGA-DA-A1HY-06 11 105924005 105924005 G A KBTBD3 Missense_Mutation p.P471S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HY-06 11 106810258 106810258 G A GUCY1A2 Silent p.V378V 0.29 TCGA-DA-A1HY-06 11 10785008 10785008 C T CTR9 Missense_Mutation p.H294Y 0.29 deleterious(0.03) probably_damaging(0.932) TCGA-DA-A1HY-06 11 110007260 110007260 A T ZC3H12C Intron 0.45 TCGA-DA-A1HY-06 11 111156452 111156452 C T C11orf53 Silent p.T128T 0.40 TCGA-DA-A1HY-06 11 111228346 111228346 C T POU2AF1 Missense_Mutation p.A94T 0.59 tolerated(0.47) benign(0.095) TCGA-DA-A1HY-06 11 111711514 111711514 G A ALG9 Missense_Mutation p.P175L 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 11 113701610 113701610 G A USP28 Silent p.L297L 0.31 TCGA-DA-A1HY-06 11 117279656 117279656 C T CEP164 Silent p.T1220T 0.43 TCGA-DA-A1HY-06 11 118355575 118355575 A G KMT2A Splice_Site p.X1407_splice 0.46 TCGA-DA-A1HY-06 11 118495748 118495748 C T PHLDB1 Missense_Mutation p.P152S 0.39 tolerated(0.38) benign(0.01) TCGA-DA-A1HY-06 11 124189289 124189289 C T OR8D2 Missense_Mutation p.E269K 0.40 tolerated(0.09) possibly_damaging(0.492) TCGA-DA-A1HY-06 11 125548100 125548100 G A ACRV1 Missense_Mutation p.P49S 0.39 deleterious(0.05) probably_damaging(0.994) TCGA-DA-A1HY-06 11 1271698 1271698 C T MUC5B Silent p.L4530L 0.36 TCGA-DA-A1HY-06 11 130784568 130784568 C T SNX19 Missense_Mutation p.E423K 0.41 deleterious(0.02) benign(0.254) TCGA-DA-A1HY-06 11 17517182 17517182 G A USH1C Silent p.V863V 0.30 TCGA-DA-A1HY-06 11 17531345 17531345 G A USH1C Missense_Mutation p.P524L 0.44 deleterious_low_confidence(0.03) benign(0.014) TCGA-DA-A1HY-06 11 17565859 17565859 G A USH1C 5'Flank 0.31 TCGA-DA-A1HY-06 11 19077217 19077217 G A MRGPRX2 Silent p.L245L 0.36 TCGA-DA-A1HY-06 11 20805363 20805363 G A NELL1 Missense_Mutation p.E108K 0.27 deleterious(0.02) benign(0.263) TCGA-DA-A1HY-06 11 2339139 2339139 G A TSPAN32 Silent p.R316R 0.34 TCGA-DA-A1HY-06 11 3039907 3039907 T C CARS Missense_Mutation p.M490V 0.46 deleterious(0.03) possibly_damaging(0.768) TCGA-DA-A1HY-06 11 32955372 32955372 A G QSER1 Silent p.L727L 0.36 TCGA-DA-A1HY-06 11 35282355 35282355 C T SLC1A2 3'UTR 0.50 TCGA-DA-A1HY-06 11 3832548 3832548 C T PGAP2 Missense_Mutation p.T20I 0.29 deleterious(0.01) possibly_damaging(0.616) TCGA-DA-A1HY-06 11 40136831 40136831 C T LRRC4C Missense_Mutation p.G338R 0.37 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 11 407816 407816 C T SIGIRR Splice_Site p.X161_splice 0.35 TCGA-DA-A1HY-06 11 4388762 4388762 C T OR52B4 Missense_Mutation p.G255E 0.32 tolerated(0.07) possibly_damaging(0.905) TCGA-DA-A1HY-06 11 4388942 4388942 C T OR52B4 Missense_Mutation p.R195Q 0.40 tolerated(0.22) benign(0.056) TCGA-DA-A1HY-06 11 4567205 4567205 C T OR52M1 Missense_Mutation p.S262F 0.32 tolerated(0.14) probably_damaging(1) TCGA-DA-A1HY-06 11 45945791 45945791 C T GYLTL1B Missense_Mutation p.A152V 0.32 tolerated(0.1) possibly_damaging(0.487) TCGA-DA-A1HY-06 11 48266760 48266760 C T OR4X2 Silent p.F35F 0.35 TCGA-DA-A1HY-06 11 48285864 48285864 T G OR4X1 Missense_Mutation p.L151R 0.31 deleterious(0) probably_damaging(0.968) TCGA-DA-A1HY-06 11 5411147 5411147 C T OR51M1 Silent p.L173L 0.44 TCGA-DA-A1HY-06 11 5529680 5529680 C T UBQLN3 Missense_Mutation p.S370N 0.31 tolerated(0.56) benign(0.01) TCGA-DA-A1HY-06 11 55339891 55339891 G A OR4C16 Missense_Mutation p.M96I 0.37 tolerated(0.18) benign(0.002) TCGA-DA-A1HY-06 11 5536227 5536227 G A UBQLNL 3'UTR 0.37 TCGA-DA-A1HY-06 11 55655574 55655574 G A TRIM51 Missense_Mutation p.E192K 0.24 tolerated(0.22) benign(0.38) TCGA-DA-A1HY-06 11 56000222 56000222 C T OR5T2 Missense_Mutation p.G147E 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-DA-A1HY-06 11 57886068 57886068 G A OR9I1 Silent p.P283P 0.41 TCGA-DA-A1HY-06 11 57958119 57958119 C T OR9Q2 Missense_Mutation p.R53C 0.52 tolerated(0.14) benign(0.004) TCGA-DA-A1HY-06 11 5809912 5809912 G A OR52N1 Silent p.F45F 0.34 TCGA-DA-A1HY-06 11 60559752 60559752 G A MS4A10 Silent p.G106G 0.39 TCGA-DA-A1HY-06 11 61318936 61318936 C T SYT7 Splice_Site p.X46_splice 0.33 TCGA-DA-A1HY-06 11 61646941 61646941 G A FADS3 Missense_Mutation p.A122V 0.42 tolerated(1) benign(0.005) TCGA-DA-A1HY-06 11 62300532 62300532 C A AHNAK Missense_Mutation p.V453L 0.41 probably_damaging(0.997) TCGA-DA-A1HY-06 11 62397359 62397359 G A GANAB Missense_Mutation p.T577I 0.45 deleterious(0.01) possibly_damaging(0.833) TCGA-DA-A1HY-06 11 62592569 62592569 G A STX5 Silent p.S206S 0.40 TCGA-DA-A1HY-06 11 64702161 64702161 C T GPHA2 3'UTR 0.29 TCGA-DA-A1HY-06 11 64786190 64786190 C T ARL2 Silent p.S108S 0.35 TCGA-DA-A1HY-06 11 64786191 64786191 C T ARL2 Silent p.L109L 0.35 TCGA-DA-A1HY-06 11 65315579 65315579 G A LTBP3 Intron 0.29 TCGA-DA-A1HY-06 11 66283386 66283386 C T BBS1 Silent p.S191S 0.40 TCGA-DA-A1HY-06 11 68326039 68326039 A C PPP6R3 Missense_Mutation p.E246A 0.39 deleterious(0.02) benign(0.23) TCGA-DA-A1HY-06 11 6964841 6964841 G A ZNF215 Missense_Mutation p.M227I 0.33 tolerated(0.15) benign(0.001) TCGA-DA-A1HY-06 11 70281742 70281742 G C CTTN Missense_Mutation p.G557A 0.29 deleterious_low_confidence(0) benign(0.016) TCGA-DA-A1HY-06 11 74009327 74009327 C T P4HA3 Missense_Mutation p.G216E 0.32 tolerated(0.11) benign(0.168) TCGA-DA-A1HY-06 11 76183815 76183815 C T C11orf30 Missense_Mutation p.P347S 0.37 tolerated(0.25) benign(0.348) TCGA-DA-A1HY-06 11 78437243 78437243 G A TENM4 Missense_Mutation p.S1144F 0.39 deleterious(0) possibly_damaging(0.459) TCGA-DA-A1HY-06 11 93837781 93837781 G A HEPHL1 Missense_Mutation p.E924K 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 12 100166805 100166805 C T ANKS1B Silent p.K341K 0.36 TCGA-DA-A1HY-06 12 101491710 101491710 G A ANO4 Missense_Mutation p.E630K 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1HY-06 12 102811694 102811694 C T IGF1 Missense_Mutation p.G164R 0.32 tolerated(0.1) probably_damaging(0.936) TCGA-DA-A1HY-06 12 104122764 104122764 C T STAB2 Silent p.S1691S 0.28 TCGA-DA-A1HY-06 12 104142922 104142922 G A STAB2 Silent p.K2142K 0.31 TCGA-DA-A1HY-06 12 104851282 104851282 C G CHST11 Missense_Mutation p.F31L 0.32 tolerated(0.33) benign(0.004) TCGA-DA-A1HY-06 12 105462516 105462516 G A ALDH1L2 Missense_Mutation p.P192L 0.39 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-DA-A1HY-06 12 109717634 109717634 T C FOXN4 Missense_Mutation p.T466A 0.30 tolerated(0.16) possibly_damaging(0.614) TCGA-DA-A1HY-06 12 109921395 109921395 C T UBE3B Silent p.I13I 0.40 TCGA-DA-A1HY-06 12 112608218 112608218 G A HECTD4 Nonsense_Mutation p.R3845* 0.34 TCGA-DA-A1HY-06 12 11420717 11420717 G A PRB3 Missense_Mutation p.P156S 0.23 tolerated(0.11) unknown(0) TCGA-DA-A1HY-06 12 11420780 11420780 G A PRB3 Missense_Mutation p.P135S 0.31 tolerated(0.16) unknown(0) TCGA-DA-A1HY-06 12 123339876 123339876 C T HIP1R Missense_Mutation p.P306L 0.38 deleterious(0) probably_damaging(0.994) TCGA-DA-A1HY-06 12 124332555 124332555 C T DNAH10 Silent p.T1836T 0.36 TCGA-DA-A1HY-06 12 124821308 124821308 G A NCOR2 Missense_Mutation p.R2036C 0.24 probably_damaging(0.999) TCGA-DA-A1HY-06 12 124821309 124821309 G A NCOR2 Silent p.L2035L 0.23 TCGA-DA-A1HY-06 12 130921582 130921582 C T RIMBP2 Silent p.R620R 0.42 TCGA-DA-A1HY-06 12 13717515 13717515 G A GRIN2B Missense_Mutation p.S886F 0.34 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 12 176506 176506 A G IQSEC3 Missense_Mutation p.K153R 0.21 tolerated_low_confidence(0.21) benign(0.137) TCGA-DA-A1HY-06 12 21032374 21032374 C T SLCO1B3 Silent p.I380I 0.12 TCGA-DA-A1HY-06 12 46623370 46623370 C T SLC38A1 Missense_Mutation p.E59K 0.26 tolerated(0.66) benign(0.344) TCGA-DA-A1HY-06 12 46623371 46623371 C T SLC38A1 Silent p.L58L 0.26 TCGA-DA-A1HY-06 12 48372117 48372117 C T COL2A1 Missense_Mutation p.G987E 0.35 unknown(0) TCGA-DA-A1HY-06 12 48372118 48372118 C T COL2A1 Missense_Mutation p.G987R 0.35 unknown(0) TCGA-DA-A1HY-06 12 48387816 48387816 G A COL2A1 Silent p.F277F 0.28 TCGA-DA-A1HY-06 12 48866655 48866655 G A ANP32D Missense_Mutation p.E70K 0.31 deleterious(0.03) possibly_damaging(0.483) TCGA-DA-A1HY-06 12 51126160 51126160 C T DIP2B Silent p.I1274I 0.32 TCGA-DA-A1HY-06 12 52574371 52574371 G A KRT80 Missense_Mutation p.H198Y 0.34 tolerated(0.07) benign(0.098) TCGA-DA-A1HY-06 12 52714852 52714852 C T KRT83 Missense_Mutation p.E90K 0.27 tolerated(0.08) benign(0.135) TCGA-DA-A1HY-06 12 52825840 52825840 C T KRT75 Missense_Mutation p.E242K 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 12 54676897 54676897 A G HNRNPA1 Silent p.G262G 0.48 TCGA-DA-A1HY-06 12 54756761 54756761 G A GPR84 Missense_Mutation p.P292L 0.38 deleterious(0.03) benign(0.02) TCGA-DA-A1HY-06 12 55820744 55820744 C T OR6C76 Missense_Mutation p.S236L 0.33 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-DA-A1HY-06 12 55863067 55863067 A T OR6C70 Missense_Mutation p.F286I 0.36 deleterious_low_confidence(0) benign(0.078) TCGA-DA-A1HY-06 12 57397095 57397095 G A ZBTB39 Missense_Mutation p.A536V 0.30 tolerated(0.27) benign(0.001) TCGA-DA-A1HY-06 12 62926419 62926419 G A MON2 Silent p.Q534Q 0.29 TCGA-DA-A1HY-06 12 62931023 62931023 C T MON2 Nonsense_Mutation p.Q665* 0.41 TCGA-DA-A1HY-06 12 64833072 64833072 C T XPOT Nonsense_Mutation p.Q928* 0.18 TCGA-DA-A1HY-06 12 66638963 66638963 G A IRAK3 Missense_Mutation p.R412Q 0.40 tolerated(0.39) benign(0.041) TCGA-DA-A1HY-06 12 70088210 70088210 C T BEST3 Missense_Mutation p.E63K 0.33 deleterious(0) probably_damaging(0.955) TCGA-DA-A1HY-06 12 72092833 72092833 C T TMEM19 Missense_Mutation p.A264V 0.28 deleterious(0) probably_damaging(0.918) TCGA-DA-A1HY-06 12 72969286 72969286 G A TRHDE Missense_Mutation p.R717Q 0.40 deleterious(0) probably_damaging(0.976) TCGA-DA-A1HY-06 12 78400220 78400220 C T NAV3 Missense_Mutation p.S301L 0.29 tolerated(0.34) benign(0) TCGA-DA-A1HY-06 12 79747333 79747333 G A SYT1 Missense_Mutation p.G288S 0.40 tolerated(0.07) probably_damaging(0.963) TCGA-DA-A1HY-06 12 83289650 83289650 C T TMTC2 Silent p.S236S 0.42 TCGA-DA-A1HY-06 12 88452727 88452727 A G CEP290 Missense_Mutation p.V2239A 0.29 benign(0.002) TCGA-DA-A1HY-06 12 8991724 8991724 C T A2ML1 Missense_Mutation p.A329V 0.42 deleterious(0.02) benign(0.064) TCGA-DA-A1HY-06 12 90049686 90049686 G A ATP2B1 5'UTR 0.21 TCGA-DA-A1HY-06 12 91347528 91347528 C T CCER1 Missense_Mutation p.G331E 0.36 tolerated(1) unknown(0) TCGA-DA-A1HY-06 13 101182352 101182352 G A PCCA Missense_Mutation p.V707M 0.27 deleterious(0) probably_damaging(0.993) TCGA-DA-A1HY-06 13 103286311 103286311 C T TPP2 Missense_Mutation p.A419V 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-DA-A1HY-06 13 103338770 103338770 G A METTL21C Nonsense_Mutation p.Q136* 0.30 TCGA-DA-A1HY-06 13 103701714 103701714 C T SLC10A2 Missense_Mutation p.E282K 0.43 deleterious(0.04) benign(0.019) TCGA-DA-A1HY-06 13 109438085 109438085 G A MYO16 Missense_Mutation p.E182K 0.27 deleterious(0) possibly_damaging(0.85) TCGA-DA-A1HY-06 13 113739293 113739293 T G MCF2L Missense_Mutation p.F717V 0.39 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 13 20207928 20207928 C T MPHOSPH8 Missense_Mutation p.P14S 0.72 tolerated_low_confidence(0.28) benign(0.003) TCGA-DA-A1HY-06 13 23908553 23908553 G A SACS Silent p.P3154P 0.36 TCGA-DA-A1HY-06 13 24466079 24466079 C T C1QTNF9B Silent p.E117E 0.21 TCGA-DA-A1HY-06 13 25029327 25029327 G A PARP4 Silent p.P862P 0.38 TCGA-DA-A1HY-06 13 25029328 25029328 G A PARP4 Missense_Mutation p.P862L 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 13 27241696 27241696 C T WASF3 Missense_Mutation p.S104F 0.33 deleterious(0) probably_damaging(0.982) TCGA-DA-A1HY-06 13 28543156 28543156 C T CDX2 5'UTR 0.37 TCGA-DA-A1HY-06 13 28608542 28608542 G A FLT3 Missense_Mutation p.P534S 0.21 tolerated(0.21) benign(0.001) TCGA-DA-A1HY-06 13 42875615 42875615 A C AKAP11 Missense_Mutation p.L911F 0.38 deleterious(0) benign(0.006) TCGA-DA-A1HY-06 13 50204908 50204908 G A ARL11 Missense_Mutation p.D109N 0.41 tolerated(0.71) benign(0.025) TCGA-DA-A1HY-06 13 78184223 78184223 G A SCEL Missense_Mutation p.R440K 0.38 deleterious(0.02) benign(0.009) TCGA-DA-A1HY-06 13 79175507 79175507 C T POU4F1 3'UTR 0.35 TCGA-DA-A1HY-06 13 96246218 96246218 C T DZIP1 Missense_Mutation p.E554K 0.38 tolerated(0.06) possibly_damaging(0.71) TCGA-DA-A1HY-06 13 98116528 98116528 C T RAP2A Silent p.S128S 0.46 TCGA-DA-A1HY-06 13 98829181 98829181 C T RNF113B Missense_Mutation p.G104R 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-DA-A1HY-06 14 106236286 106236286 G A IGHG3 Silent p.F173F 0.69 TCGA-DA-A1HY-06 14 106815823 106815823 T A IGHV3-33 Nonsense_Mutation p.K84* 0.58 TCGA-DA-A1HY-06 14 19553804 19553804 G A POTEG Missense_Mutation p.E130K 0.22 deleterious(0.04) possibly_damaging(0.776) TCGA-DA-A1HY-06 14 20389492 20389492 C T OR4K5 Missense_Mutation p.H243Y 0.55 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 14 21993005 21993005 G A SALL2 Missense_Mutation p.P286L 0.54 deleterious(0) possibly_damaging(0.758) TCGA-DA-A1HY-06 14 23894021 23894021 G A MYH7 Missense_Mutation p.S879F 0.59 deleterious(0) possibly_damaging(0.663) TCGA-DA-A1HY-06 14 24036263 24036263 G A AP1G2 Intron 0.75 TCGA-DA-A1HY-06 14 28733754 28733754 G T BNIP3P1 RNA 0.67 TCGA-DA-A1HY-06 14 63417186 63417186 C T KCNH5 Missense_Mutation p.G345E 0.61 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 14 64494361 64494361 C T SYNE2 Silent p.F2188F 0.62 TCGA-DA-A1HY-06 14 65262076 65262076 G A SPTB Silent p.I541I 0.63 TCGA-DA-A1HY-06 14 70924300 70924300 C T ADAM21 Silent p.Y28Y 0.47 TCGA-DA-A1HY-06 14 70925587 70925587 C T ADAM21 Silent p.F457F 0.82 TCGA-DA-A1HY-06 14 73409708 73409708 C T DCAF4 Silent p.A146A 0.46 TCGA-DA-A1HY-06 14 75022393 75022393 G A LTBP2 Silent p.T278T 0.71 TCGA-DA-A1HY-06 14 75130447 75130447 A G AREL1 Silent p.G816G 0.48 TCGA-DA-A1HY-06 14 80669111 80669111 G A DIO2 Missense_Mutation p.S284F 0.50 tolerated(0.22) benign(0.001) TCGA-DA-A1HY-06 14 81744869 81744869 G A STON2 Silent p.I262I 0.52 TCGA-DA-A1HY-06 14 94712008 94712008 G A PPP4R4 Splice_Site p.X476_splice 0.60 TCGA-DA-A1HY-06 14 94754895 94754895 C T SERPINA10 Silent p.G240G 0.55 TCGA-DA-A1HY-06 14 95029831 95029831 C T SERPINA4 Silent p.I4I 0.59 TCGA-DA-A1HY-06 15 23443566 23443566 C T AC100757.1 5'Flank 0.65 TCGA-DA-A1HY-06 15 25494414 25494414 T C SNORD115-43 RNA 0.41 TCGA-DA-A1HY-06 15 31327763 31327763 C T TRPM1 Missense_Mutation p.E913K 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 15 31334343 31334343 G A TRPM1 Missense_Mutation p.P650L 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 15 31822943 31822943 C T OTUD7A Missense_Mutation p.D207N 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 15 35830580 35830580 G A DPH6 Silent p.L69L 0.44 TCGA-DA-A1HY-06 15 41065983 41065983 G A DNAJC17 Missense_Mutation p.S245F 0.36 deleterious(0) probably_damaging(0.977) TCGA-DA-A1HY-06 15 41120753 41120753 C T PPP1R14D Silent p.R29R 0.22 TCGA-DA-A1HY-06 15 41224389 41224389 C T DLL4 Missense_Mutation p.H227Y 0.41 deleterious(0.01) benign(0.105) TCGA-DA-A1HY-06 15 41483761 41483761 G A EXD1 Missense_Mutation p.S190F 0.42 tolerated(0.1) benign(0.364) TCGA-DA-A1HY-06 15 41749994 41749994 C T RTF1 Silent p.A194A 0.32 TCGA-DA-A1HY-06 15 42103103 42103103 C T MAPKBP1 Missense_Mutation p.P77S 0.31 deleterious(0.02) possibly_damaging(0.686) TCGA-DA-A1HY-06 15 42103104 42103104 C T MAPKBP1 Missense_Mutation p.P77L 0.30 deleterious(0) possibly_damaging(0.564) TCGA-DA-A1HY-06 15 43028124 43028124 G A CDAN1 Missense_Mutation p.P241L 0.29 tolerated(0.06) probably_damaging(0.994) TCGA-DA-A1HY-06 15 43748500 43748500 G A TP53BP1 Missense_Mutation p.P769L 0.46 tolerated_low_confidence(0.12) benign(0.328) TCGA-DA-A1HY-06 15 44581195 44581195 C T CASC4 5'UTR 0.40 TCGA-DA-A1HY-06 15 45410043 45410043 T G DUOXA2 Missense_Mutation p.L300R 0.35 deleterious(0.04) possibly_damaging(0.653) TCGA-DA-A1HY-06 15 52681552 52681552 T C MYO5A Silent p.K517K 0.37 TCGA-DA-A1HY-06 15 54799319 54799319 T C UNC13C Missense_Mutation p.I1769T 0.43 deleterious_low_confidence(0) benign(0.367) TCGA-DA-A1HY-06 15 57731085 57731085 C T CGNL1 Silent p.S296S 0.27 TCGA-DA-A1HY-06 15 58256130 58256130 G A ALDH1A2 Missense_Mutation p.R347C 0.38 deleterious(0) probably_damaging(0.98) TCGA-DA-A1HY-06 15 65490813 65490813 G A CILP Missense_Mutation p.P604L 0.35 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 15 68650907 68650907 C T ITGA11 Missense_Mutation p.M163I 0.38 deleterious(0.05) probably_damaging(0.978) TCGA-DA-A1HY-06 15 72192259 72192259 A G MYO9A Missense_Mutation p.L1080P 0.23 tolerated(0.14) benign(0.389) TCGA-DA-A1HY-06 15 78474955 78474955 C T ACSBG1 Missense_Mutation p.M249I 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-DA-A1HY-06 15 81635619 81635619 C T TMC3 Nonsense_Mutation p.W572* 0.35 TCGA-DA-A1HY-06 15 81641879 81641879 C T TMC3 Missense_Mutation p.M371I 0.30 deleterious(0) benign(0.336) TCGA-DA-A1HY-06 15 86259046 86259046 C T AKAP13 Missense_Mutation p.S1880F 0.30 deleterious(0) possibly_damaging(0.698) TCGA-DA-A1HY-06 15 86259047 86259047 C T AKAP13 Silent p.S1880S 0.32 TCGA-DA-A1HY-06 15 86266551 86266551 G A AKAP13 Missense_Mutation p.E2253K 0.43 deleterious(0) possibly_damaging(0.792) TCGA-DA-A1HY-06 15 89400378 89400378 G A ACAN Missense_Mutation p.G1521E 0.40 deleterious(0.03) probably_damaging(1) TCGA-DA-A1HY-06 15 89422470 89422470 C T HAPLN3 Missense_Mutation p.G175E 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 16 16256936 16256936 G A ABCC6 Silent p.F1140F 0.32 TCGA-DA-A1HY-06 16 19020617 19020617 G A TMC7 Missense_Mutation p.G64E 0.37 tolerated(0.2) benign(0.013) TCGA-DA-A1HY-06 16 2012361 2012361 G A RPS2 Intron 0.32 TCGA-DA-A1HY-06 16 20797429 20797429 G A ACSM3 Missense_Mutation p.M391I 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-DA-A1HY-06 16 20944554 20944554 G A DNAH3 Silent p.S4091S 0.36 TCGA-DA-A1HY-06 16 20998665 20998665 C T DNAH3 Missense_Mutation p.E2330K 0.31 tolerated(0.25) benign(0.003) TCGA-DA-A1HY-06 16 23391419 23391419 G A SCNN1B Missense_Mutation p.G491R 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HY-06 16 23641356 23641356 G A PALB2 Missense_Mutation p.P707S 0.41 deleterious(0.03) possibly_damaging(0.821) TCGA-DA-A1HY-06 16 25172472 25172472 C T LCMT1 Silent p.L172L 0.20 TCGA-DA-A1HY-06 16 25172473 25172473 C T LCMT1 Nonsense_Mutation p.R173* 0.20 TCGA-DA-A1HY-06 16 28328743 28328743 C - SBK1 Frame_Shift_Del p.R12Afs*3 0.25 TCGA-DA-A1HY-06 16 29997949 29997949 C T TAOK2 Nonsense_Mutation p.Q786* 0.44 TCGA-DA-A1HY-06 16 30736335 30736335 G A SRCAP Missense_Mutation p.A1864T 0.26 possibly_damaging(0.581) TCGA-DA-A1HY-06 16 31391335 31391335 C T ITGAX Silent p.I1003I 0.36 TCGA-DA-A1HY-06 16 3406001 3406001 C T OR2C1 Missense_Mutation p.P21S 0.33 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HY-06 16 4777098 4777098 A C ANKS3 Missense_Mutation p.I84S 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 16 4924977 4924977 C T UBN1 Missense_Mutation p.P856S 0.24 tolerated_low_confidence(0.52) benign(0.002) TCGA-DA-A1HY-06 16 50368640 50368640 G A BRD7 Missense_Mutation p.P290L 0.33 deleterious(0.04) possibly_damaging(0.732) TCGA-DA-A1HY-06 16 5057485 5057485 G A SEC14L5 Missense_Mutation p.E524K 0.42 deleterious(0.02) benign(0.044) TCGA-DA-A1HY-06 16 5058631 5058631 G A SEC14L5 Silent p.R594R 0.31 TCGA-DA-A1HY-06 16 55794516 55794516 G A CES1P1 RNA 0.50 TCGA-DA-A1HY-06 16 55844564 55844564 C T CES1 Missense_Mutation p.E395K 0.31 deleterious(0.05) benign(0.039) TCGA-DA-A1HY-06 16 57601437 57601437 C T GPR114 Missense_Mutation p.S252F 0.31 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HY-06 16 57719772 57719772 T C GPR97 Silent p.L492L 0.42 TCGA-DA-A1HY-06 16 57741474 57741474 G A CCDC135 Missense_Mutation p.D321N 0.32 tolerated(0.48) benign(0.191) TCGA-DA-A1HY-06 16 66919776 66919776 A G PDP2 Silent p.%3D 0.39 TCGA-DA-A1HY-06 16 681328 681328 G A WFIKKN1 Silent p.G25G 0.32 TCGA-DA-A1HY-06 16 68597303 68597303 C T ZFP90 Missense_Mutation p.L205F 0.45 tolerated(0.34) benign(0.372) TCGA-DA-A1HY-06 16 68714894 68714894 C T CDH3 Silent p.T297T 0.32 TCGA-DA-A1HY-06 16 68934432 68934432 G A TANGO6 Silent p.Q491Q 0.18 TCGA-DA-A1HY-06 16 70166106 70166106 C T PDPR Silent p.I300I 0.24 TCGA-DA-A1HY-06 16 70515342 70515342 G A COG4 Missense_Mutation p.L719F 0.32 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HY-06 16 70972585 70972585 G A HYDIN Silent p.A2309A 0.34 TCGA-DA-A1HY-06 16 70972586 70972586 G A HYDIN Missense_Mutation p.A2309V 0.34 benign(0.178) TCGA-DA-A1HY-06 16 71683303 71683303 G A PHLPP2 Silent p.P1154P 0.46 TCGA-DA-A1HY-06 16 77398272 77398272 G A ADAMTS18 Missense_Mutation p.P262L 0.37 deleterious(0.03) possibly_damaging(0.607) TCGA-DA-A1HY-06 16 81150981 81150981 C T PKD1L2 RNA 0.45 TCGA-DA-A1HY-06 16 81197309 81197309 G A PKD1L2 RNA 0.30 TCGA-DA-A1HY-06 16 816999 816999 C T MSLN Silent p.I504I 0.24 TCGA-DA-A1HY-06 16 82033438 82033438 G A SDR42E1 Missense_Mutation p.R154W 0.37 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HY-06 16 88696903 88696903 C T ZC3H18 Silent p.D859D 0.26 TCGA-DA-A1HY-06 16 89347138 89347138 G A ANKRD11 Missense_Mutation p.P1938S 0.31 benign(0.057) TCGA-DA-A1HY-06 16 9858299 9858299 C T GRIN2A Silent p.R1034R 0.35 TCGA-DA-A1HY-06 17 12661555 12661555 G A MYOCD Intron 0.65 TCGA-DA-A1HY-06 17 18022891 18022891 C T MYO15A Silent p.P259P 0.56 TCGA-DA-A1HY-06 17 18025674 18025674 C T MYO15A Missense_Mutation p.S1187F 0.65 unknown(0) TCGA-DA-A1HY-06 17 20805843 20805843 C T RP11-344E13.3 RNA 0.46 TCGA-DA-A1HY-06 17 28548746 28548746 C T SLC6A4 Silent p.G77G 0.38 TCGA-DA-A1HY-06 17 3144488 3144488 G A OR1D4 RNA 0.85 TCGA-DA-A1HY-06 17 33521270 33521270 G A SLC35G3 Silent p.P19P 0.35 TCGA-DA-A1HY-06 17 34235898 34235898 G A AC015849.16 RNA 0.36 TCGA-DA-A1HY-06 17 35633959 35633959 C T ACACA Missense_Mutation p.E257K 0.31 deleterious(0.03) benign(0.002) TCGA-DA-A1HY-06 17 36047183 36047183 G A HNF1B 3'UTR 0.48 TCGA-DA-A1HY-06 17 37265584 37265584 C T PLXDC1 Missense_Mutation p.E106K 0.42 tolerated(0.06) benign(0.287) TCGA-DA-A1HY-06 17 38244584 38244584 C A THRA Missense_Mutation p.S271R 0.35 tolerated(0.13) benign(0.056) TCGA-DA-A1HY-06 17 39138698 39138698 G A KRT40 Missense_Mutation p.S183F 0.34 deleterious(0) probably_damaging(0.966) TCGA-DA-A1HY-06 17 3970484 3970484 G A ZZEF1 Silent p.S1376S 0.65 TCGA-DA-A1HY-06 17 40004299 40004299 G C KLHL10 Missense_Mutation p.E523Q 0.34 deleterious(0.02) possibly_damaging(0.869) TCGA-DA-A1HY-06 17 40695668 40695668 C T NAGLU Silent p.P548P 0.33 TCGA-DA-A1HY-06 17 43003834 43003834 G A KIF18B Silent p.A800A 0.40 TCGA-DA-A1HY-06 17 43196356 43196356 G A PLCD3 Silent p.L247L 0.38 TCGA-DA-A1HY-06 17 43214795 43214795 C T ACBD4 Missense_Mutation p.P159L 0.36 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-DA-A1HY-06 17 48668888 48668888 C T CACNA1G Missense_Mutation p.P849L 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 17 48755144 48755144 G A ABCC3 Missense_Mutation p.E1140K 0.35 deleterious(0) probably_damaging(0.98) TCGA-DA-A1HY-06 17 51900535 51900535 G C KIF2B Silent p.T47T 0.42 TCGA-DA-A1HY-06 17 56620779 56620779 G A C17orf47 Missense_Mutation p.P257S 0.47 tolerated(0.34) benign(0.274) TCGA-DA-A1HY-06 17 58153570 58153570 C G HEATR6 Missense_Mutation p.C83S 0.42 tolerated(0.49) benign(0.074) TCGA-DA-A1HY-06 17 59147469 59147469 C T BCAS3 Intron 0.30 TCGA-DA-A1HY-06 17 60766297 60766297 G A MRC2 Missense_Mutation p.G1104S 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-DA-A1HY-06 17 65720284 65720284 G A NOL11 Silent p.R213R 0.49 TCGA-DA-A1HY-06 17 67083609 67083609 G A ABCA6 Missense_Mutation p.S1235F 0.53 deleterious(0.04) benign(0.026) TCGA-DA-A1HY-06 17 73805957 73805957 C G UNK Missense_Mutation p.S74C 0.20 deleterious(0) probably_damaging(0.988) TCGA-DA-A1HY-06 17 73805958 73805958 C T UNK Silent p.S74S 0.20 TCGA-DA-A1HY-06 17 73945826 73945826 G A ACOX1 Missense_Mutation p.T484I 0.44 tolerated(0.46) benign(0.002) TCGA-DA-A1HY-06 17 7462439 7462439 C A TNFSF13 Nonsense_Mutation p.S28* 0.08 TCGA-DA-A1HY-06 17 74922716 74922716 C T MGAT5B Missense_Mutation p.P410S 0.46 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HY-06 17 7669791 7669791 C T DNAH2 Silent p.L1223L 0.55 TCGA-DA-A1HY-06 17 79254472 79254472 T C SLC38A10 Missense_Mutation p.Y188C 0.53 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 17 7951891 7951891 G A ALOX15B 3'UTR 0.67 TCGA-DA-A1HY-06 17 80151902 80151902 G A CCDC57 Silent p.S244S 0.54 TCGA-DA-A1HY-06 17 8658918 8658918 G A SPDYE4 Silent p.L135L 0.54 TCGA-DA-A1HY-06 18 14478943 14478943 C T CXADRP3 RNA 0.47 TCGA-DA-A1HY-06 18 21338364 21338364 C T LAMA3 Missense_Mutation p.R318W 0.48 benign(0.006) TCGA-DA-A1HY-06 18 25593740 25593740 G A CDH2 Silent p.F102F 0.35 TCGA-DA-A1HY-06 18 29039837 29039837 G A DSG3 Missense_Mutation p.D183N 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 18 47421349 47421349 C T MYO5B Missense_Mutation p.E1003K 0.38 tolerated(0.06) possibly_damaging(0.624) TCGA-DA-A1HY-06 18 50705382 50705382 G A DCC Missense_Mutation p.G490E 0.27 tolerated(0.7) benign(0.094) TCGA-DA-A1HY-06 18 50705383 50705383 A T DCC Silent p.G490G 0.29 TCGA-DA-A1HY-06 18 59763177 59763177 G A PIGN Missense_Mutation p.S695F 0.40 deleterious(0) probably_damaging(0.987) TCGA-DA-A1HY-06 18 61654341 61654341 C T SERPINB8 Silent p.F318F 0.32 TCGA-DA-A1HY-06 18 7231534 7231534 C G LRRC30 Missense_Mutation p.P133R 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 18 72775621 72775621 C T ZNF407 Missense_Mutation p.P1982S 0.36 tolerated(0.09) benign(0.162) TCGA-DA-A1HY-06 18 72999391 72999391 A T TSHZ1 Missense_Mutation p.N632Y 0.29 deleterious(0.04) possibly_damaging(0.61) TCGA-DA-A1HY-06 18 72999824 72999824 T G TSHZ1 Missense_Mutation p.V776G 0.37 tolerated(0.44) benign(0.001) TCGA-DA-A1HY-06 19 10097023 10097023 C T COL5A3 Missense_Mutation p.E774K 0.35 unknown(0) TCGA-DA-A1HY-06 19 10398497 10398497 C T ICAM4 Silent p.T201T 0.25 TCGA-DA-A1HY-06 19 11326104 11326104 C T DOCK6 Silent p.K1355K 0.27 TCGA-DA-A1HY-06 19 12774560 12774560 C T MAN2B1 Silent p.R240R 0.34 TCGA-DA-A1HY-06 19 12977540 12977540 C T MAST1 Silent p.I701I 0.25 TCGA-DA-A1HY-06 19 13340994 13340994 C T CACNA1A Missense_Mutation p.M1810I 0.19 benign(0.043) TCGA-DA-A1HY-06 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.43 TCGA-DA-A1HY-06 19 14749142 14749142 G A EMR3 Missense_Mutation p.S420F 0.40 deleterious(0) possibly_damaging(0.697) TCGA-DA-A1HY-06 19 15375303 15375303 G A BRD4 Missense_Mutation p.P375L 0.30 possibly_damaging(0.908) TCGA-DA-A1HY-06 19 15482798 15482798 C T AKAP8 Missense_Mutation p.G335S 0.40 tolerated(0.05) possibly_damaging(0.728) TCGA-DA-A1HY-06 19 15752255 15752255 C T CYP4F3 Silent p.G10G 0.35 TCGA-DA-A1HY-06 19 16861094 16861094 C G NWD1 Silent p.A547A 0.40 TCGA-DA-A1HY-06 19 17369132 17369132 C T USHBP1 Missense_Mutation p.G370E 0.26 tolerated(0.28) possibly_damaging(0.573) TCGA-DA-A1HY-06 19 17571379 17571379 G A NXNL1 Silent p.F100F 0.40 TCGA-DA-A1HY-06 19 19906124 19906124 T A ZNF506 Missense_Mutation p.Y191F 0.38 deleterious(0) benign(0.093) TCGA-DA-A1HY-06 19 22363977 22363977 G A ZNF676 Missense_Mutation p.S181F 0.28 tolerated(0.71) benign(0.161) TCGA-DA-A1HY-06 19 22574587 22574587 G A ZNF98 Missense_Mutation p.H484Y 0.21 deleterious(0.02) probably_damaging(0.943) TCGA-DA-A1HY-06 19 23928095 23928095 G A ZNF681 Missense_Mutation p.S86L 0.21 tolerated(0.33) possibly_damaging(0.587) TCGA-DA-A1HY-06 19 24010418 24010418 C T RPSAP58 Missense_Mutation p.S152F 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-DA-A1HY-06 19 2808366 2808366 C T THOP1 Missense_Mutation p.P460L 0.22 deleterious(0) probably_damaging(0.951) TCGA-DA-A1HY-06 19 31039847 31039847 C T ZNF536 Silent p.F1107F 0.27 TCGA-DA-A1HY-06 19 34263725 34263725 C T CHST8 Silent p.F344F 0.35 TCGA-DA-A1HY-06 19 35978362 35978362 C T KRTDAP Missense_Mutation p.G90R 0.30 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DA-A1HY-06 19 36033815 36033815 C T GAPDHS Intron 0.31 TCGA-DA-A1HY-06 19 36220893 36220893 G A KMT2B Missense_Mutation p.G1648D 0.32 probably_damaging(0.998) TCGA-DA-A1HY-06 19 36297475 36297475 C T PRODH2 Silent p.R362R 0.32 TCGA-DA-A1HY-06 19 36357402 36357402 C T KIRREL2 3'UTR 0.40 TCGA-DA-A1HY-06 19 36362815 36362815 G A APLP1 Missense_Mutation p.E243K 0.39 tolerated(0.21) benign(0.037) TCGA-DA-A1HY-06 19 37680644 37680644 G A ZNF585B Missense_Mutation p.P71S 0.37 tolerated(0.73) benign(0.048) TCGA-DA-A1HY-06 19 38160719 38160719 G A ZNF781 Missense_Mutation p.H111Y 0.50 deleterious(0) possibly_damaging(0.89) TCGA-DA-A1HY-06 19 39228260 39228260 G A CAPN12 Silent p.F328F 0.45 TCGA-DA-A1HY-06 19 39994874 39994874 C T DLL3 Silent p.V272V 0.36 TCGA-DA-A1HY-06 19 40200021 40200021 C A LGALS14 3'Flank 0.36 TCGA-DA-A1HY-06 19 40373974 40373974 G C FCGBP Missense_Mutation p.S4035C 0.12 possibly_damaging(0.902) TCGA-DA-A1HY-06 19 40405948 40405948 G C FCGBP Missense_Mutation p.S1633C 0.07 unknown(0) TCGA-DA-A1HY-06 19 40408351 40408351 C T FCGBP Silent p.G1496G 0.14 TCGA-DA-A1HY-06 19 42791959 42791959 C T CIC Intron 0.22 TCGA-DA-A1HY-06 19 43358124 43358124 C T PSG10P RNA 0.33 TCGA-DA-A1HY-06 19 43698670 43698670 G A PSG4 Silent p.F355F 0.39 TCGA-DA-A1HY-06 19 44515002 44515002 C T ZNF230 Nonsense_Mutation p.Q271* 0.37 TCGA-DA-A1HY-06 19 44680499 44680499 C T ZNF226 Missense_Mutation p.P362S 0.25 tolerated(0.08) probably_damaging(1) TCGA-DA-A1HY-06 19 44934706 44934706 C T ZNF229 Missense_Mutation p.G84R 0.36 tolerated(0.24) benign(0.037) TCGA-DA-A1HY-06 19 45015211 45015211 C T CEACAM20 Intron 0.30 TCGA-DA-A1HY-06 19 45024659 45024659 G A CEACAM20 RNA 0.31 TCGA-DA-A1HY-06 19 4513464 4513464 C T PLIN4 Missense_Mutation p.D156N 0.42 deleterious(0.02) possibly_damaging(0.728) TCGA-DA-A1HY-06 19 45316579 45316579 G A BCAM Missense_Mutation p.E193K 0.40 tolerated(0.34) benign(0.006) TCGA-DA-A1HY-06 19 45895485 45895485 G A PPP1R13L Missense_Mutation p.P490S 0.34 deleterious(0.02) possibly_damaging(0.641) TCGA-DA-A1HY-06 19 46133221 46133221 C A EML2 Silent p.V399V 0.28 TCGA-DA-A1HY-06 19 47706966 47706966 T C SAE1 Missense_Mutation p.V306A 0.41 deleterious(0) benign(0.25) TCGA-DA-A1HY-06 19 48533707 48533707 C T CABP5 3'UTR 0.33 TCGA-DA-A1HY-06 19 48800455 48800455 G A CCDC114 Silent p.G597G 0.28 TCGA-DA-A1HY-06 19 51645900 51645900 C T SIGLEC7 Missense_Mutation p.R92W 0.31 deleterious(0.02) benign(0.032) TCGA-DA-A1HY-06 19 53056989 53056989 C T ZNF808 Missense_Mutation p.L274F 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-DA-A1HY-06 19 53644232 53644232 G A ZNF347 Nonsense_Mutation p.R618* 0.38 TCGA-DA-A1HY-06 19 53644982 53644982 G A ZNF347 Missense_Mutation p.H368Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 19 55086445 55086445 G A LILRA2 Silent p.S200S 0.38 TCGA-DA-A1HY-06 19 55107116 55107116 A T LILRA1 Missense_Mutation p.K225M 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HY-06 19 56363515 56363515 C T NLRP4 Silent p.F23F 0.37 TCGA-DA-A1HY-06 19 56423178 56423178 C T NLRP13 Missense_Mutation p.E669K 0.39 tolerated(0.85) benign(0.001) TCGA-DA-A1HY-06 19 56467098 56467098 C A NLRP8 Missense_Mutation p.F558L 0.43 deleterious(0) probably_damaging(0.994) TCGA-DA-A1HY-06 19 56539831 56539831 C T NLRP5 Silent p.F744F 0.35 TCGA-DA-A1HY-06 19 5783075 5783075 G A PRR22 Missense_Mutation p.P395S 0.44 tolerated(1) benign(0.015) TCGA-DA-A1HY-06 19 58563902 58563902 C T ZSCAN1 Silent p.L170L 0.40 TCGA-DA-A1HY-06 19 58563903 58563903 C T ZSCAN1 Missense_Mutation p.P171S 0.41 tolerated(0.37) benign(0.071) TCGA-DA-A1HY-06 19 6897305 6897305 C T EMR1 Silent p.F128F 0.31 TCGA-DA-A1HY-06 19 7976313 7976313 C T MAP2K7 Intron 0.29 TCGA-DA-A1HY-06 19 8651589 8651589 C T ADAMTS10 Silent p.Q752Q 0.37 TCGA-DA-A1HY-06 19 8656742 8656742 G A ADAMTS10 Missense_Mutation p.T580I 0.37 deleterious(0.02) probably_damaging(0.95) TCGA-DA-A1HY-06 19 880116 880116 G A MED16 Missense_Mutation p.H392Y 0.48 deleterious(0) benign(0.415) TCGA-DA-A1HY-06 19 880117 880117 G A MED16 Silent p.V391V 0.48 TCGA-DA-A1HY-06 19 8841646 8841646 C T OR2Z1 Silent p.L86L 0.47 TCGA-DA-A1HY-06 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.38 tolerated(0.13) benign(0.153) TCGA-DA-A1HY-06 19 8966742 8966742 C T MUC16 Missense_Mutation p.R14404K 0.36 possibly_damaging(0.744) TCGA-DA-A1HY-06 19 9066340 9066340 G A MUC16 Missense_Mutation p.P7036S 0.40 unknown(0) TCGA-DA-A1HY-06 19 9071592 9071592 G A MUC16 Missense_Mutation p.P5285L 0.41 unknown(0) TCGA-DA-A1HY-06 19 9071830 9071830 C T MUC16 Missense_Mutation p.D5206N 0.27 unknown(0) TCGA-DA-A1HY-06 19 9071831 9071831 C T MUC16 Silent p.T5205T 0.27 TCGA-DA-A1HY-06 19 9073213 9073213 G A MUC16 Missense_Mutation p.P4745S 0.37 unknown(0) TCGA-DA-A1HY-06 19 9074987 9074987 C T MUC16 Silent p.V4153V 0.33 TCGA-DA-A1HY-06 19 9085370 9085370 C T MUC16 Missense_Mutation p.A2149T 0.44 unknown(0) TCGA-DA-A1HY-06 19 9086851 9086851 G A MUC16 Missense_Mutation p.S1655F 0.33 unknown(0) TCGA-DA-A1HY-06 19 9090068 9090068 C T MUC16 Missense_Mutation p.E583K 0.24 unknown(0) TCGA-DA-A1HY-06 19 9091577 9091577 C T MUC16 Missense_Mutation p.G80R 0.33 unknown(0) TCGA-DA-A1HY-06 19 9204006 9204006 C T OR1M1 Missense_Mutation p.S29F 0.35 tolerated(0.55) benign(0.094) TCGA-DA-A1HY-06 19 968479 968479 G A ARID3A Missense_Mutation p.E524K 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 1 101190259 101190259 C T VCAM1 Silent p.S247S 0.75 TCGA-DA-A1HY-06 1 104112383 104112383 C T AMY2B Intron 0.92 TCGA-DA-A1HY-06 1 11151116 11151116 G A EXOSC10 Missense_Mutation p.P200S 0.35 deleterious(0.04) possibly_damaging(0.725) TCGA-DA-A1HY-06 1 112043053 112043053 C T ADORA3 Intron 0.38 TCGA-DA-A1HY-06 1 113471845 113471845 G A SLC16A1 Missense_Mutation p.S29F 0.80 deleterious(0.04) probably_damaging(0.992) TCGA-DA-A1HY-06 1 1139545 1139545 G A TNFRSF18 Intron 0.56 TCGA-DA-A1HY-06 1 114311009 114311009 G A RSBN1 Missense_Mutation p.S554L 0.79 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1HY-06 1 114400247 114400247 A C PTPN22 Intron 0.83 TCGA-DA-A1HY-06 1 12186103 12186103 C T TNFRSF8 Missense_Mutation p.R417W 0.23 tolerated(0.08) benign(0.045) TCGA-DA-A1HY-06 1 12704715 12704715 C T AADACL4 Silent p.F50F 0.24 TCGA-DA-A1HY-06 1 145566692 145566692 G A ANKRD35 Missense_Mutation p.E932K 0.33 tolerated(0.46) benign(0.243) TCGA-DA-A1HY-06 1 146684893 146684893 G A FMO5 Missense_Mutation p.P157S 0.33 deleterious(0) probably_damaging(0.951) TCGA-DA-A1HY-06 1 151824739 151824739 G A THEM5 Missense_Mutation p.S107F 0.31 deleterious(0.03) benign(0.252) TCGA-DA-A1HY-06 1 151992726 151992726 C T NBPF18P RNA 0.31 TCGA-DA-A1HY-06 1 152286961 152286961 C T FLG Missense_Mutation p.R134K 0.22 possibly_damaging(0.495) TCGA-DA-A1HY-06 1 152382004 152382004 C T CRNN 3'UTR 0.50 TCGA-DA-A1HY-06 1 152383145 152383145 C T CRNN Missense_Mutation p.R138K 0.71 tolerated(0.2) benign(0.008) TCGA-DA-A1HY-06 1 152760256 152760256 C T LCE1E 3'UTR 0.33 TCGA-DA-A1HY-06 1 152883885 152883885 G A IVL Missense_Mutation p.G538R 0.23 tolerated_low_confidence(0.83) benign(0.003) TCGA-DA-A1HY-06 1 154223553 154223553 C T UBAP2L Missense_Mutation p.P417L 0.38 deleterious(0.03) unknown(0) TCGA-DA-A1HY-06 1 154515250 154515250 G A TDRD10 Silent p.E152E 0.42 TCGA-DA-A1HY-06 1 155171226 155171226 A G THBS3 Silent p.N437N 0.31 TCGA-DA-A1HY-06 1 156047197 156047197 G T MEX3A Missense_Mutation p.A244E 0.27 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HY-06 1 156521541 156521541 G A IQGAP3 Missense_Mutation p.R564W 0.34 deleterious(0.01) possibly_damaging(0.901) TCGA-DA-A1HY-06 1 156821440 156821440 C T INSRR Missense_Mutation p.G361D 0.38 deleterious(0) probably_damaging(0.954) TCGA-DA-A1HY-06 1 157665275 157665275 G A FCRL3 Missense_Mutation p.H419Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-DA-A1HY-06 1 158262565 158262565 C T CD1C Missense_Mutation p.L264F 0.39 deleterious(0) possibly_damaging(0.886) TCGA-DA-A1HY-06 1 158627413 158627413 G A SPTA1 Nonsense_Mutation p.R887* 0.32 TCGA-DA-A1HY-06 1 15909809 15909809 G A AGMAT Silent p.S118S 0.55 TCGA-DA-A1HY-06 1 159898380 159898380 C T IGSF9 Missense_Mutation p.R933Q 0.40 tolerated(0.06) benign(0.285) TCGA-DA-A1HY-06 1 160280027 160280027 G A COPA Silent p.F366F 0.75 TCGA-DA-A1HY-06 1 160969759 160969759 G A F11R Missense_Mutation p.P201S 0.84 tolerated(0.12) benign(0.173) TCGA-DA-A1HY-06 1 161133736 161133736 G A USP21 Missense_Mutation p.E395K 0.36 deleterious(0) possibly_damaging(0.635) TCGA-DA-A1HY-06 1 161519741 161519741 G A FCGR3A 5'UTR 0.20 TCGA-DA-A1HY-06 1 163044239 163044239 C T RGS4 Silent p.L266L 0.33 TCGA-DA-A1HY-06 1 165634254 165634254 C T ALDH9A1 Splice_Site p.X488_splice 0.84 TCGA-DA-A1HY-06 1 167096288 167096288 C T DUSP27 Silent p.S640S 0.26 TCGA-DA-A1HY-06 1 171077319 171077319 C T FMO3 Missense_Mutation p.S195L 0.20 deleterious(0) possibly_damaging(0.458) TCGA-DA-A1HY-06 1 171086346 171086346 C T FMO3 Missense_Mutation p.P455S 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 1 17395735 17395735 G A PADI2 Missense_Mutation p.P601L 0.56 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 1 17599902 17599902 G A PADI3 Missense_Mutation p.R372K 0.48 deleterious(0) possibly_damaging(0.898) TCGA-DA-A1HY-06 1 177928086 177928086 A G SEC16B Silent p.I341I 0.22 TCGA-DA-A1HY-06 1 179815508 179815508 G A TOR1AIP2 Missense_Mutation p.P371S 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 1 18618377 18618377 C T IGSF21 Silent p.T67T 0.28 TCGA-DA-A1HY-06 1 190129940 190129940 C T BRINP3 Missense_Mutation p.D348N 0.21 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HY-06 1 19184014 19184014 G A TAS1R2 Silent p.I98I 0.55 TCGA-DA-A1HY-06 1 193149768 193149768 G A B3GALT2 Missense_Mutation p.P309S 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1HY-06 1 19609267 19609267 G A AKR7A3 Silent p.A318A 0.29 TCGA-DA-A1HY-06 1 19609268 19609268 G A AKR7A3 Missense_Mutation p.A318V 0.29 deleterious(0.03) possibly_damaging(0.485) TCGA-DA-A1HY-06 1 196197465 196197465 T A KCNT2 Silent p.V1099V 0.30 TCGA-DA-A1HY-06 1 201287835 201287835 C T PKP1 Missense_Mutation p.P382S 0.20 deleterious(0) possibly_damaging(0.873) TCGA-DA-A1HY-06 1 202092105 202092105 G A GPR37L1 Nonsense_Mutation p.W5* 0.85 TCGA-DA-A1HY-06 1 205554120 205554120 G A MFSD4 Splice_Site p.X325_splice 0.30 TCGA-DA-A1HY-06 1 207297306 207297306 C T C4BPA Silent p.V156V 0.73 TCGA-DA-A1HY-06 1 207317945 207317945 C T C4BPA Silent p.L559L 0.18 TCGA-DA-A1HY-06 1 207646192 207646192 G A CR2 Missense_Mutation p.G549E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 1 21100054 21100054 G A HP1BP3 Missense_Mutation p.P134S 0.26 deleterious(0) probably_damaging(0.968) TCGA-DA-A1HY-06 1 21551745 21551745 G A ECE1 Missense_Mutation p.R680W 0.60 deleterious(0) probably_damaging(0.978) TCGA-DA-A1HY-06 1 215916657 215916657 G A USH2A Missense_Mutation p.P3804S 0.32 probably_damaging(0.971) TCGA-DA-A1HY-06 1 228520616 228520616 C T OBSCN Silent p.F6193F 0.27 TCGA-DA-A1HY-06 1 22965376 22965376 G A C1QA Missense_Mutation p.E72K 0.55 deleterious(0.01) possibly_damaging(0.776) TCGA-DA-A1HY-06 1 233518359 233518359 G A MLK4 Missense_Mutation p.E1005K 0.57 deleterious(0) possibly_damaging(0.521) TCGA-DA-A1HY-06 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.84 probably_damaging(0.992) TCGA-DA-A1HY-06 1 245848736 245848736 C T KIF26B Silent p.S817S 0.83 TCGA-DA-A1HY-06 1 247150618 247150618 C T ZNF695 Missense_Mutation p.R400K 0.66 tolerated(0.35) possibly_damaging(0.688) TCGA-DA-A1HY-06 1 247769279 247769279 A T OR2G3 Missense_Mutation p.H131L 0.19 deleterious(0.01) benign(0.013) TCGA-DA-A1HY-06 1 247769280 247769280 C T OR2G3 Silent p.H131H 0.19 TCGA-DA-A1HY-06 1 247901928 247901928 G A OR14K1 Silent p.Q4Q 0.77 TCGA-DA-A1HY-06 1 248059693 248059693 G A OR2W3 Missense_Mutation p.D269N 0.26 tolerated(0.13) benign(0.35) TCGA-DA-A1HY-06 1 248112261 248112261 C T OR2L8 Silent p.F34F 0.78 TCGA-DA-A1HY-06 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.51 deleterious(0.02) benign(0.33) TCGA-DA-A1HY-06 1 248344293 248344293 G A OR2M2 Missense_Mutation p.D336N 0.22 tolerated_low_confidence(0.08) unknown(0) TCGA-DA-A1HY-06 1 248403116 248403116 G A OR2M4 Missense_Mutation p.E296K 0.26 deleterious(0.01) benign(0.128) TCGA-DA-A1HY-06 1 26317363 26317363 G A PAFAH2 Intron 0.17 TCGA-DA-A1HY-06 1 27278629 27278629 C T C1orf172 Nonsense_Mutation p.W81* 0.27 TCGA-DA-A1HY-06 1 27736451 27736451 G A WASF2 Silent p.H358H 0.27 TCGA-DA-A1HY-06 1 27739102 27739102 G A WASF2 Missense_Mutation p.S263F 0.17 tolerated(0.43) unknown(0) TCGA-DA-A1HY-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.47 TCGA-DA-A1HY-06 1 31447636 31447636 G A PUM1 Silent p.V456V 0.28 TCGA-DA-A1HY-06 1 31754332 31754332 G A SNRNP40 Silent p.I181I 0.21 TCGA-DA-A1HY-06 1 33065969 33065969 T C ZBTB8A Silent p.V425V 0.64 TCGA-DA-A1HY-06 1 33945117 33945117 C T ZSCAN20 Silent p.C76C 0.27 TCGA-DA-A1HY-06 1 33960705 33960705 C T ZSCAN20 Missense_Mutation p.H921Y 0.20 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 1 34666393 34666393 G A C1orf94 Missense_Mutation p.E344K 0.22 tolerated_low_confidence(0.06) benign(0.082) TCGA-DA-A1HY-06 1 35227594 35227594 G A GJB4 Missense_Mutation p.D247N 0.47 tolerated(0.27) benign(0.02) TCGA-DA-A1HY-06 1 35370111 35370111 G A DLGAP3 Missense_Mutation p.P292S 0.24 tolerated(0.26) probably_damaging(0.992) TCGA-DA-A1HY-06 1 36209113 36209113 C T CLSPN Silent p.E995E 0.26 TCGA-DA-A1HY-06 1 42041341 42041341 A G HIVEP3 Missense_Mutation p.V1694A 0.22 benign(0.005) TCGA-DA-A1HY-06 1 43649360 43649360 C T WDR65 Silent p.S191S 0.26 TCGA-DA-A1HY-06 1 43896198 43896198 G A SZT2 Silent p.E1447E 0.22 TCGA-DA-A1HY-06 1 44878033 44878033 C T RNF220 Silent p.F88F 0.50 TCGA-DA-A1HY-06 1 46120896 46120896 A T GPBP1L1 Silent p.G52G 0.08 TCGA-DA-A1HY-06 1 47395722 47395722 G A CYP4A11 3'UTR 0.43 TCGA-DA-A1HY-06 1 47402384 47402384 G A CYP4A11 Silent p.I154I 0.53 TCGA-DA-A1HY-06 1 47610257 47610257 C T CYP4A22 Silent p.L311L 0.29 TCGA-DA-A1HY-06 1 47614382 47614382 G A CYP4A22 Missense_Mutation p.M491I 0.23 tolerated(1) benign(0.001) TCGA-DA-A1HY-06 1 47691530 47691530 G T TAL1 Missense_Mutation p.R11S 0.54 deleterious_low_confidence(0.04) benign(0.006) TCGA-DA-A1HY-06 1 54706582 54706582 G A SSBP3 Silent p.P284P 0.27 TCGA-DA-A1HY-06 1 55080522 55080522 C T FAM151A Silent p.L142L 0.23 TCGA-DA-A1HY-06 1 55472806 55472806 G A BSND Missense_Mutation p.G137R 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-DA-A1HY-06 1 55509558 55509558 G A PCSK9 Missense_Mutation p.E84K 0.28 deleterious(0.03) possibly_damaging(0.486) TCGA-DA-A1HY-06 1 57422559 57422559 G A C8B Missense_Mutation p.P92S 0.49 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HY-06 1 62574124 62574124 C T INADL Missense_Mutation p.H1465Y 0.42 deleterious(0) probably_damaging(0.994) TCGA-DA-A1HY-06 1 6635452 6635452 G A TAS1R1 Silent p.Q420Q 0.12 TCGA-DA-A1HY-06 1 6635453 6635453 G A TAS1R1 Splice_Site p.X420_splice 0.12 TCGA-DA-A1HY-06 1 68948079 68948079 G A DEPDC1 Missense_Mutation p.S471L 0.70 tolerated(0.06) benign(0.114) TCGA-DA-A1HY-06 1 74507089 74507089 G A LRRIQ3 Missense_Mutation p.S509F 0.78 deleterious(0) benign(0.062) TCGA-DA-A1HY-06 1 74507330 74507330 C T LRRIQ3 Missense_Mutation p.E429K 0.75 deleterious(0.01) possibly_damaging(0.472) TCGA-DA-A1HY-06 1 74957823 74957823 C T TNNI3K Missense_Mutation p.P843S 0.75 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-DA-A1HY-06 1 76397745 76397745 C T ASB17 Missense_Mutation p.G78R 0.79 tolerated_low_confidence(0.15) probably_damaging(0.979) TCGA-DA-A1HY-06 1 861336 861336 C T SAMD11 Silent p.I5I 0.47 TCGA-DA-A1HY-06 1 908974 908974 C T PLEKHN1 Missense_Mutation p.P463L 0.53 deleterious(0.04) probably_damaging(0.991) TCGA-DA-A1HY-06 1 99422250 99422250 C T LPPR5 Silent p.R95R 0.68 TCGA-DA-A1HY-06 1 99422251 99422251 C T LPPR5 Missense_Mutation p.R95K 0.68 tolerated(0.94) benign(0.001) TCGA-DA-A1HY-06 20 23472239 23472239 C T CST8 5'UTR 0.43 TCGA-DA-A1HY-06 20 24524043 24524043 G A SYNDIG1 Missense_Mutation p.D104N 0.31 deleterious(0.03) benign(0.084) TCGA-DA-A1HY-06 20 29623188 29623188 G A FRG1B 5'UTR 0.02 TCGA-DA-A1HY-06 20 30436133 30436133 G A FOXS1 5'Flank 0.32 TCGA-DA-A1HY-06 20 32879332 32879332 G A AHCY Nonsense_Mutation p.R151* 0.40 TCGA-DA-A1HY-06 20 32879333 32879333 G A AHCY Silent p.I150I 0.40 TCGA-DA-A1HY-06 20 34487325 34487325 G A PHF20 Missense_Mutation p.G439E 0.43 tolerated(0.83) benign(0) TCGA-DA-A1HY-06 20 35675514 35675514 G A RBL1 Missense_Mutation p.P516L 0.29 deleterious(0.05) benign(0.05) TCGA-DA-A1HY-06 20 39991690 39991690 C T EMILIN3 Silent p.R173R 0.78 TCGA-DA-A1HY-06 20 49225194 49225194 C T FAM65C Missense_Mutation p.E252K 0.33 deleterious(0) possibly_damaging(0.628) TCGA-DA-A1HY-06 20 49446846 49446846 G A BCAS4 Missense_Mutation p.E95K 0.28 deleterious(0) possibly_damaging(0.765) TCGA-DA-A1HY-06 20 5099321 5099321 G A PCNA Nonsense_Mutation p.Q108* 0.39 TCGA-DA-A1HY-06 20 56179783 56179783 C T ZBP1 Missense_Mutation p.R379Q 0.34 tolerated(0.59) benign(0) TCGA-DA-A1HY-06 20 57568540 57568540 C A NELFCD Missense_Mutation p.L479M 0.10 tolerated(0.13) possibly_damaging(0.741) TCGA-DA-A1HY-06 20 57766864 57766864 G A ZNF831 Missense_Mutation p.E264K 0.32 deleterious(0.02) possibly_damaging(0.746) TCGA-DA-A1HY-06 20 57766887 57766887 C T ZNF831 Silent p.S271S 0.38 TCGA-DA-A1HY-06 20 61511969 61511969 G C DIDO1 Missense_Mutation p.P1780R 0.32 possibly_damaging(0.69) TCGA-DA-A1HY-06 21 10943004 10943004 G A TPTE Nonsense_Mutation p.R195* 0.33 TCGA-DA-A1HY-06 21 10998218 10998218 G A TPTE RNA 0.16 TCGA-DA-A1HY-06 21 27264135 27264135 C T APP Missense_Mutation p.G704R 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1HY-06 21 37591677 37591677 A G DOPEY2 Silent p.Q379Q 0.28 TCGA-DA-A1HY-06 21 37617576 37617576 G A DOPEY2 Missense_Mutation p.A1100T 0.24 tolerated(0.38) benign(0.001) TCGA-DA-A1HY-06 21 37747572 37747572 T C MORC3 Missense_Mutation p.M933T 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1HY-06 21 43176851 43176851 G A RIPK4 Missense_Mutation p.S103F 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 21 45483584 45483584 T C TRAPPC10 Missense_Mutation p.L319P 0.34 deleterious(0) possibly_damaging(0.886) TCGA-DA-A1HY-06 21 45483585 45483585 C A TRAPPC10 Silent p.L319L 0.34 TCGA-DA-A1HY-06 22 17288658 17288658 C T XKR3 Nonsense_Mutation p.W102* 0.30 TCGA-DA-A1HY-06 22 17447143 17447143 A G GAB4 Missense_Mutation p.S379P 0.40 tolerated(0.32) possibly_damaging(0.665) TCGA-DA-A1HY-06 22 23652513 23652513 C T BCR Silent p.I1025I 0.21 TCGA-DA-A1HY-06 22 24034700 24034700 G A RGL4 Missense_Mutation p.E120K 0.36 tolerated(0.09) benign(0.003) TCGA-DA-A1HY-06 22 26688708 26688708 G A SEZ6L Missense_Mutation p.R144K 0.37 tolerated_low_confidence(0.14) benign(0.006) TCGA-DA-A1HY-06 22 30886159 30886159 G A SEC14L4 Missense_Mutation p.P386S 0.36 deleterious(0) possibly_damaging(0.758) TCGA-DA-A1HY-06 22 30899736 30899736 G A SEC14L4 Missense_Mutation p.R20W 0.27 deleterious(0.03) benign(0.055) TCGA-DA-A1HY-06 22 31688352 31688352 G A PIK3IP1 5'UTR 0.52 TCGA-DA-A1HY-06 22 31722980 31722980 G A PATZ1 Missense_Mutation p.S654F 0.37 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-DA-A1HY-06 22 36013287 36013287 C T MB Silent p.G6G 0.28 TCGA-DA-A1HY-06 22 38271940 38271940 C T EIF3L Silent p.I333I 0.40 TCGA-DA-A1HY-06 22 39077956 39077956 C T TOMM22 5'UTR 0.25 TCGA-DA-A1HY-06 22 41660835 41660835 C T RANGAP1 Missense_Mutation p.E105K 0.29 tolerated(0.42) benign(0.007) TCGA-DA-A1HY-06 22 44028112 44028112 G A EFCAB6 Missense_Mutation p.P702L 0.33 tolerated(0.25) benign(0.021) TCGA-DA-A1HY-06 22 45599724 45599724 A C KIAA0930 Splice_Site p.X224_splice 0.46 TCGA-DA-A1HY-06 22 46628087 46628087 G A PPARA Silent p.L370L 0.40 TCGA-DA-A1HY-06 22 46656235 46656235 C T PKDREJ Silent p.R995R 0.32 TCGA-DA-A1HY-06 22 50217580 50217580 G A BRD1 Missense_Mutation p.P129L 0.42 tolerated(0.83) benign(0.005) TCGA-DA-A1HY-06 2 108863803 108863803 G A SULT1C3 Silent p.L51L 0.41 TCGA-DA-A1HY-06 2 109522810 109522810 C T EDAR Silent p.R326R 0.43 TCGA-DA-A1HY-06 2 113514357 113514357 C T CKAP2L Silent p.R197R 0.35 TCGA-DA-A1HY-06 2 115200337 115200337 C T DPP10 5'UTR 0.52 TCGA-DA-A1HY-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.30 TCGA-DA-A1HY-06 2 119748183 119748183 G A MARCO Missense_Mutation p.G361E 0.39 deleterious(0) unknown(0) TCGA-DA-A1HY-06 2 120362534 120362534 G A PCDP1 Missense_Mutation p.G332E 0.28 deleterious(0) probably_damaging(0.967) TCGA-DA-A1HY-06 2 121047315 121047315 C T RALB Silent p.T161T 0.64 TCGA-DA-A1HY-06 2 128384601 128384601 G A MYO7B Missense_Mutation p.V1397M 0.39 deleterious(0) probably_damaging(0.979) TCGA-DA-A1HY-06 2 130738320 130738320 C T RAB6C Missense_Mutation p.P211L 0.35 tolerated_low_confidence(0.72) benign(0.005) TCGA-DA-A1HY-06 2 133541150 133541150 C T NCKAP5 Missense_Mutation p.M1078I 0.30 tolerated(0.55) benign(0) TCGA-DA-A1HY-06 2 133542973 133542973 C T NCKAP5 Missense_Mutation p.D471N 0.27 deleterious(0) probably_damaging(0.928) TCGA-DA-A1HY-06 2 141460033 141460033 C T LRP1B Missense_Mutation p.G2038E 0.41 probably_damaging(0.982) TCGA-DA-A1HY-06 2 141665646 141665646 C T LRP1B Missense_Mutation p.G1107E 0.30 probably_damaging(0.998) TCGA-DA-A1HY-06 2 145153994 145153994 T C ZEB2 Missense_Mutation p.K1018E 0.37 deleterious(0.02) possibly_damaging(0.891) TCGA-DA-A1HY-06 2 145158836 145158836 G A ZEB2 Silent p.F282F 0.40 TCGA-DA-A1HY-06 2 149519472 149519472 A T EPC2 Missense_Mutation p.H263L 0.43 deleterious(0) benign(0.336) TCGA-DA-A1HY-06 2 149519473 149519473 C T EPC2 Silent p.H263H 0.43 TCGA-DA-A1HY-06 2 152394723 152394723 C T NEB Silent p.G6976G 0.29 TCGA-DA-A1HY-06 2 154801065 154801065 C T GALNT13 Missense_Mutation p.L19F 0.43 tolerated(0.12) benign(0.003) TCGA-DA-A1HY-06 2 160605065 160605065 C T MARCH7 Missense_Mutation p.H422Y 0.38 tolerated(0.15) probably_damaging(0.989) TCGA-DA-A1HY-06 2 1643086 1643086 C T PXDN Missense_Mutation p.R1354Q 0.30 tolerated(0.56) benign(0.001) TCGA-DA-A1HY-06 2 166929999 166929999 C T SCN1A Missense_Mutation p.D45N 0.26 tolerated(0.1) benign(0.109) TCGA-DA-A1HY-06 2 168098367 168098367 G A XIRP2 Missense_Mutation p.E375K 0.32 probably_damaging(0.996) TCGA-DA-A1HY-06 2 168100738 168100738 A C XIRP2 Missense_Mutation p.K946Q 0.50 benign(0.234) TCGA-DA-A1HY-06 2 168103907 168103907 G A XIRP2 Missense_Mutation p.G2002E 0.39 benign(0.015) TCGA-DA-A1HY-06 2 170493779 170493779 C T PPIG Missense_Mutation p.H671Y 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-DA-A1HY-06 2 172195767 172195767 G A METTL8 Missense_Mutation p.S178F 0.39 deleterious(0.04) benign(0.004) TCGA-DA-A1HY-06 2 175962288 175962288 G A ATF2 Missense_Mutation p.P288S 0.33 tolerated(0.8) benign(0.004) TCGA-DA-A1HY-06 2 179443395 179443395 C T TTN Missense_Mutation p.D22758N 0.27 TCGA-DA-A1HY-06 2 179549675 179549675 G A TTN Missense_Mutation p.P10838S 0.22 TCGA-DA-A1HY-06 2 182543356 182543356 C T NEUROD1 Missense_Mutation p.D78N 0.28 tolerated(0.47) benign(0.43) TCGA-DA-A1HY-06 2 189854129 189854129 C T COL3A1 Missense_Mutation p.P215L 0.36 unknown(0) TCGA-DA-A1HY-06 2 196664178 196664178 C T DNAH7 Missense_Mutation p.E3399K 0.27 tolerated(0.51) benign(0.014) TCGA-DA-A1HY-06 2 196759894 196759894 C T DNAH7 Missense_Mutation p.D1568N 0.26 tolerated(0.49) benign(0.042) TCGA-DA-A1HY-06 2 202025477 202025477 C T CFLAR Silent p.L372L 0.42 TCGA-DA-A1HY-06 2 202687611 202687611 C T CDK15 Silent p.F176F 0.39 TCGA-DA-A1HY-06 2 203644079 203644079 G A ICA1L 3'UTR 0.62 TCGA-DA-A1HY-06 2 203839124 203839124 C T CARF Missense_Mutation p.P467S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1HY-06 2 20402566 20402566 G A SDC1 Silent p.A298A 0.34 TCGA-DA-A1HY-06 2 21227313 21227313 C T APOB Missense_Mutation p.G3972E 0.32 benign(0.002) TCGA-DA-A1HY-06 2 219295635 219295635 G A VIL1 Intron 0.67 TCGA-DA-A1HY-06 2 220352966 220352966 G A SPEG Missense_Mutation p.G2598R 0.31 probably_damaging(1) TCGA-DA-A1HY-06 2 223168937 223168937 C T CCDC140 Missense_Mutation p.R106W 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-DA-A1HY-06 2 228786205 228786205 C T DAW1 Nonsense_Mutation p.Q381* 0.42 TCGA-DA-A1HY-06 2 229890692 229890692 C T PID1 Missense_Mutation p.E135K 0.56 tolerated(0.21) probably_damaging(0.994) TCGA-DA-A1HY-06 2 231152654 231152654 G A SP140 Missense_Mutation p.A565T 0.32 tolerated(0.22) benign(0.119) TCGA-DA-A1HY-06 2 231222634 231222634 C T SP140L Silent p.F74F 0.29 TCGA-DA-A1HY-06 2 231222635 231222635 C T SP140L Missense_Mutation p.L75F 0.30 tolerated(0.23) probably_damaging(0.964) TCGA-DA-A1HY-06 2 233128139 233128139 C T DIS3L2 Missense_Mutation p.R550C 0.39 deleterious(0.02) possibly_damaging(0.758) TCGA-DA-A1HY-06 2 233409160 233409160 G A CHRNG Silent p.R373R 0.37 TCGA-DA-A1HY-06 2 234077951 234077951 G A INPP5D Missense_Mutation p.G507E 0.14 tolerated(0.05) possibly_damaging(0.523) TCGA-DA-A1HY-06 2 234077952 234077952 G A INPP5D Silent p.G507G 0.14 TCGA-DA-A1HY-06 2 234627473 234627473 A T UGT1A4 Nonsense_Mutation p.R3* 0.52 TCGA-DA-A1HY-06 2 234749390 234749390 G A HJURP Missense_Mutation p.P679L 0.38 tolerated(0.07) probably_damaging(0.994) TCGA-DA-A1HY-06 2 234749392 234749392 G C HJURP Missense_Mutation p.F678L 0.37 tolerated(0.65) benign(0.045) TCGA-DA-A1HY-06 2 234905064 234905064 C T TRPM8 Missense_Mutation p.P1012S 0.34 deleterious(0) possibly_damaging(0.531) TCGA-DA-A1HY-06 2 24021069 24021069 G A ATAD2B Missense_Mutation p.S860L 0.33 deleterious(0) possibly_damaging(0.786) TCGA-DA-A1HY-06 2 240984523 240984523 G T OR6B3 Missense_Mutation p.H323N 0.40 tolerated_low_confidence(0.43) benign(0) TCGA-DA-A1HY-06 2 241715312 241715312 G A KIF1A Missense_Mutation p.P305L 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 2 242181883 242181883 C T HDLBP Missense_Mutation p.E721K 0.28 tolerated(0.37) benign(0.007) TCGA-DA-A1HY-06 2 25965571 25965571 G A ASXL2 Missense_Mutation p.S1212L 0.42 tolerated(0.67) benign(0.008) TCGA-DA-A1HY-06 2 27157447 27157447 G A DPYSL5 Silent p.G264G 0.38 TCGA-DA-A1HY-06 2 27424861 27424861 G A SLC5A6 Missense_Mutation p.P453S 0.42 tolerated(1) benign(0.006) TCGA-DA-A1HY-06 2 27427419 27427419 G A SLC5A6 Silent p.L305L 0.20 TCGA-DA-A1HY-06 2 27802109 27802109 C T C2orf16 Silent p.S890S 0.46 TCGA-DA-A1HY-06 2 30955419 30955419 C T CAPN13 Silent p.G604G 0.32 TCGA-DA-A1HY-06 2 45442 45442 C T FAM110C Missense_Mutation p.R315Q 0.28 tolerated_low_confidence(0.12) benign(0.012) TCGA-DA-A1HY-06 2 46607423 46607423 G A EPAS1 Missense_Mutation p.E538K 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 2 46739923 46739923 G A ATP6V1E2 5'UTR 0.56 TCGA-DA-A1HY-06 2 48678188 48678188 T G PPP1R21 Missense_Mutation p.D33E 0.41 tolerated(0.28) probably_damaging(0.999) TCGA-DA-A1HY-06 2 55543249 55543249 G A CCDC88A Silent p.L1249L 0.40 TCGA-DA-A1HY-06 2 56420137 56420137 C T CCDC85A Missense_Mutation p.P268S 0.39 tolerated_low_confidence(0.08) benign(0.024) TCGA-DA-A1HY-06 2 71780317 71780317 C G DYSF Missense_Mutation p.D661E 0.33 deleterious(0) probably_damaging(0.954) TCGA-DA-A1HY-06 2 71797377 71797377 C T DYSF Missense_Mutation p.P1000S 0.28 tolerated(0.57) benign(0.032) TCGA-DA-A1HY-06 2 75879379 75879379 C G MRPL19 Missense_Mutation p.F111L 0.32 deleterious(0) probably_damaging(0.99) TCGA-DA-A1HY-06 2 80529669 80529669 G A LRRTM1 Missense_Mutation p.H426Y 0.49 deleterious(0.04) possibly_damaging(0.475) TCGA-DA-A1HY-06 2 84780102 84780102 G A DNAH6 Missense_Mutation p.E516K 0.26 deleterious(0.01) benign(0.231) TCGA-DA-A1HY-06 2 85850842 85850842 C T USP39 Silent p.T169T 0.45 TCGA-DA-A1HY-06 2 88367503 88367503 C T SMYD1 Silent p.S40S 0.43 TCGA-DA-A1HY-06 2 88474315 88474315 C T THNSL2 Silent p.F127F 0.35 TCGA-DA-A1HY-06 2 89384908 89384908 T A IGKV3-15 Missense_Mutation p.E37V 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-DA-A1HY-06 2 99689498 99689498 C T TSGA10 Silent p.E307E 0.41 TCGA-DA-A1HY-06 3 10106090 10106090 G A FANCD2 Silent p.V666V 0.13 TCGA-DA-A1HY-06 3 108719488 108719488 C T MORC1 Missense_Mutation p.M701I 0.21 tolerated(0.12) benign(0.003) TCGA-DA-A1HY-06 3 111632298 111632298 G A PHLDB2 Missense_Mutation p.D490N 0.35 deleterious(0) probably_damaging(0.985) TCGA-DA-A1HY-06 3 113374138 113374138 G A KIAA2018 Missense_Mutation p.P2131S 0.35 benign(0.001) TCGA-DA-A1HY-06 3 113634601 113634601 C T GRAMD1C Missense_Mutation p.H336Y 0.41 deleterious(0) possibly_damaging(0.501) TCGA-DA-A1HY-06 3 121409709 121409709 G A GOLGB1 Silent p.N2834N 0.30 TCGA-DA-A1HY-06 3 121976030 121976030 G A CASR Silent p.R96R 0.34 TCGA-DA-A1HY-06 3 121980875 121980875 G A CASR Silent p.R331R 0.33 TCGA-DA-A1HY-06 3 121981059 121981059 C T CASR Missense_Mutation p.P393S 0.37 tolerated(0.06) benign(0.401) TCGA-DA-A1HY-06 3 123451887 123451887 C T MYLK Missense_Mutation p.E458K 0.51 tolerated(0.18) benign(0.156) TCGA-DA-A1HY-06 3 123663826 123663826 T C CCDC14 Missense_Mutation p.I412V 0.35 tolerated(0.32) benign(0.274) TCGA-DA-A1HY-06 3 126202270 126202270 C T UROC1 Missense_Mutation p.G671D 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HY-06 3 127335869 127335869 C T MCM2 Nonsense_Mutation p.Q561* 0.45 TCGA-DA-A1HY-06 3 130292970 130292970 C T COL6A6 Missense_Mutation p.P1050S 0.30 tolerated(0.18) benign(0.01) TCGA-DA-A1HY-06 3 130292971 130292971 C T COL6A6 Missense_Mutation p.P1050L 0.29 deleterious(0.04) benign(0.169) TCGA-DA-A1HY-06 3 131624237 131624237 G A CPNE4 Silent p.I17I 0.35 TCGA-DA-A1HY-06 3 134851608 134851608 C T EPHB1 Silent p.I338I 0.36 TCGA-DA-A1HY-06 3 137843631 137843631 C T A4GNT Missense_Mutation p.M166I 0.33 deleterious(0.01) possibly_damaging(0.61) TCGA-DA-A1HY-06 3 139297773 139297773 G A NMNAT3 Silent p.I41I 0.22 TCGA-DA-A1HY-06 3 142037515 142037515 G A XRN1 Missense_Mutation p.P1513S 0.30 tolerated_low_confidence(0.14) benign(0.012) TCGA-DA-A1HY-06 3 142037516 142037516 G A XRN1 Silent p.F1512F 0.28 TCGA-DA-A1HY-06 3 142269040 142269040 C G ATR Missense_Mutation p.M970I 0.42 tolerated(0.42) benign(0.001) TCGA-DA-A1HY-06 3 143292979 143292979 G A SLC9A9 Silent p.F317F 0.28 TCGA-DA-A1HY-06 3 148877926 148877926 C T HPS3 Missense_Mutation p.P656S 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-DA-A1HY-06 3 150911323 150911323 C T MED12L Missense_Mutation p.S672L 0.22 tolerated(0.49) benign(0.002) TCGA-DA-A1HY-06 3 151598668 151598668 C T SUCNR1 Missense_Mutation p.L113F 0.43 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HY-06 3 156395964 156395964 C T TIPARP Nonsense_Mutation p.Q160* 0.32 TCGA-DA-A1HY-06 3 164906327 164906327 C T SLITRK3 Silent p.V764V 0.42 TCGA-DA-A1HY-06 3 170009647 170009647 A G PRKCI Silent p.G403G 0.53 TCGA-DA-A1HY-06 3 185191163 185191163 C T MAP3K13 Missense_Mutation p.P682S 0.33 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-DA-A1HY-06 3 192125916 192125916 G A FGF12 Missense_Mutation p.P33S 0.44 deleterious(0.01) benign(0.14) TCGA-DA-A1HY-06 3 194062366 194062366 G A CPN2 Missense_Mutation p.L356F 0.25 deleterious(0) probably_damaging(0.949) TCGA-DA-A1HY-06 3 196159174 196159174 C T UBXN7 Intron 0.34 TCGA-DA-A1HY-06 3 196159175 196159175 C T UBXN7 Intron 0.34 TCGA-DA-A1HY-06 3 2787337 2787337 C T CNTN4 Missense_Mutation p.S105L 0.43 tolerated(0.14) benign(0.069) TCGA-DA-A1HY-06 3 31674613 31674613 C T STT3B Missense_Mutation p.P792S 0.35 tolerated(0.42) benign(0.001) TCGA-DA-A1HY-06 3 33055744 33055744 G A GLB1 Missense_Mutation p.P513L 0.38 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 3 36778887 36778887 C T DCLK3 Missense_Mutation p.E422K 0.40 deleterious(0) possibly_damaging(0.874) TCGA-DA-A1HY-06 3 36873951 36873951 C T TRANK1 Missense_Mutation p.G2331R 0.38 tolerated(0.06) possibly_damaging(0.655) TCGA-DA-A1HY-06 3 39228484 39228484 C T XIRP1 Missense_Mutation p.R818Q 0.43 tolerated(0.39) benign(0.029) TCGA-DA-A1HY-06 3 42567408 42567408 G A VIPR1 Missense_Mutation p.E108K 0.33 tolerated(0.1) benign(0.013) TCGA-DA-A1HY-06 3 45048959 45048961 CTC TT EXOSC7 Frame_Shift_Del p.S222Cfs*9 0.26 TCGA-DA-A1HY-06 3 46414753 46414753 C T CCR5 Silent p.I120I 0.30 TCGA-DA-A1HY-06 3 48683241 48683241 G A CELSR3 Silent p.S2508S 0.38 TCGA-DA-A1HY-06 3 48697088 48697088 C T CELSR3 Missense_Mutation p.G994S 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 3 49940161 49940161 C T MST1R Silent p.R294R 0.39 TCGA-DA-A1HY-06 3 50112638 50112638 C T RBM6 Missense_Mutation p.R1041C 0.41 tolerated(0.1) possibly_damaging(0.582) TCGA-DA-A1HY-06 3 50329695 50329695 G A IFRD2 Missense_Mutation p.A68V 0.36 deleterious(0.05) benign(0.027) TCGA-DA-A1HY-06 3 51864773 51864773 C T IQCF3 Missense_Mutation p.P141S 0.39 tolerated(0.79) benign(0.003) TCGA-DA-A1HY-06 3 67054583 67054583 C T KBTBD8 Missense_Mutation p.R398C 0.29 deleterious(0.04) probably_damaging(0.983) TCGA-DA-A1HY-06 3 67426126 67426126 G A SUCLG2 Intron 0.73 TCGA-DA-A1HY-06 3 85961618 85961618 G A CADM2 Missense_Mutation p.A202T 0.38 tolerated(0.63) benign(0.025) TCGA-DA-A1HY-06 3 98072976 98072976 C T OR5K4 Silent p.S93S 0.31 TCGA-DA-A1HY-06 3 99569486 99569486 C T FILIP1L Missense_Mutation p.R345Q 0.34 tolerated(0.92) benign(0.048) TCGA-DA-A1HY-06 4 100461583 100461583 G A C4orf17 Missense_Mutation p.G284E 0.32 tolerated(0.25) benign(0.323) TCGA-DA-A1HY-06 4 104577406 104577406 T C TACR3 Missense_Mutation p.E278G 0.24 tolerated(0.13) benign(0.082) TCGA-DA-A1HY-06 4 10669521 10669521 G A CLNK 5'UTR 0.30 TCGA-DA-A1HY-06 4 114284612 114284612 G A ANK2 Silent p.G3625G 0.45 TCGA-DA-A1HY-06 4 119951765 119951765 C T SYNPO2 Missense_Mutation p.P612L 0.36 deleterious(0.02) probably_damaging(1) TCGA-DA-A1HY-06 4 119952719 119952719 C T SYNPO2 Missense_Mutation p.S930L 0.32 deleterious(0) probably_damaging(0.935) TCGA-DA-A1HY-06 4 121966865 121966865 G A NDNF Missense_Mutation p.S43L 0.39 tolerated(0.07) possibly_damaging(0.89) TCGA-DA-A1HY-06 4 128685509 128685509 G A SLC25A31 Missense_Mutation p.G158R 0.34 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HY-06 4 138449656 138449656 G A PCDH18 Missense_Mutation p.L906F 0.38 tolerated(0.1) benign(0.445) TCGA-DA-A1HY-06 4 144826661 144826661 C T GYPE 5'UTR 0.40 TCGA-DA-A1HY-06 4 145580038 145580038 G A HHIP Missense_Mutation p.G190E 0.37 tolerated(0.34) possibly_damaging(0.619) TCGA-DA-A1HY-06 4 148744044 148744044 C G ARHGAP10 Intron 0.44 TCGA-DA-A1HY-06 4 15444490 15444490 G A C1QTNF7 3'UTR 0.27 TCGA-DA-A1HY-06 4 164246548 164246548 C T NPY1R Silent p.T354T 0.32 TCGA-DA-A1HY-06 4 166226792 166226792 G A KLHL2 Silent p.K322K 0.29 TCGA-DA-A1HY-06 4 167921597 167921597 C T SPOCK3 Missense_Mutation p.D88N 0.37 deleterious(0) benign(0.157) TCGA-DA-A1HY-06 4 169327157 169327157 C T DDX60L Missense_Mutation p.E1053K 0.29 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HY-06 4 170051274 170051274 G A SH3RF1 Missense_Mutation p.P368S 0.20 tolerated(0.32) possibly_damaging(0.904) TCGA-DA-A1HY-06 4 20620541 20620541 G A SLIT2 Missense_Mutation p.R1500Q 0.27 deleterious(0) probably_damaging(0.986) TCGA-DA-A1HY-06 4 39409134 39409134 C T KLB Missense_Mutation p.P189S 0.38 deleterious(0.03) probably_damaging(1) TCGA-DA-A1HY-06 4 42424886 42424886 G C ATP8A1 Silent p.V1081V 0.35 TCGA-DA-A1HY-06 4 46042961 46042961 G A GABRG1 3'UTR 0.26 TCGA-DA-A1HY-06 4 46252457 46252457 C T GABRA2 Silent p.K408K 0.37 TCGA-DA-A1HY-06 4 46264123 46264123 C T GABRA2 Missense_Mutation p.M293I 0.36 deleterious(0.02) possibly_damaging(0.461) TCGA-DA-A1HY-06 4 46305590 46305590 C T GABRA2 Missense_Mutation p.R248K 0.29 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HY-06 4 48036995 48036995 C T NIPAL1 Missense_Mutation p.H187Y 0.24 deleterious(0) probably_damaging(0.966) TCGA-DA-A1HY-06 4 48140986 48140986 T C TEC Missense_Mutation p.K530R 0.35 tolerated(0.39) probably_damaging(0.999) TCGA-DA-A1HY-06 4 52927009 52927009 C T SPATA18 Silent p.S85S 0.23 TCGA-DA-A1HY-06 4 55948165 55948165 A T KDR Missense_Mutation p.L1269Q 0.27 deleterious(0.01) benign(0.395) TCGA-DA-A1HY-06 4 57889516 57889516 G A POLR2B Missense_Mutation p.D846N 0.40 deleterious(0.04) benign(0.243) TCGA-DA-A1HY-06 4 59339 59339 G A ZNF595 Missense_Mutation p.R7K 0.05 tolerated_low_confidence(0.16) benign(0.008) TCGA-DA-A1HY-06 4 69536047 69536047 C T UGT2B15 Nonsense_Mutation p.W97* 0.41 TCGA-DA-A1HY-06 4 69795746 69795746 G A UGT2A3 Nonsense_Mutation p.R457* 0.44 TCGA-DA-A1HY-06 4 71275345 71275345 G A PROL1 Silent p.P100P 0.40 TCGA-DA-A1HY-06 4 71509727 71509727 G A ENAM Missense_Mutation p.E862K 0.36 deleterious(0) possibly_damaging(0.841) TCGA-DA-A1HY-06 4 7435343 7435343 C T PSAPL1 Missense_Mutation p.A422T 0.35 deleterious(0.03) benign(0.386) TCGA-DA-A1HY-06 4 7684478 7684478 G A SORCS2 Silent p.G450G 0.33 TCGA-DA-A1HY-06 4 80328611 80328611 C T GK2 Silent p.L248L 0.31 TCGA-DA-A1HY-06 4 88414891 88414891 C T SPARCL1 Missense_Mutation p.R354K 0.34 tolerated(0.88) benign(0.003) TCGA-DA-A1HY-06 4 88415124 88415124 C T SPARCL1 Missense_Mutation p.M276I 0.38 tolerated(0.37) benign(0) TCGA-DA-A1HY-06 4 88583725 88583725 G A DMP1 Silent p.R265R 0.37 TCGA-DA-A1HY-06 4 96199481 96199481 C T UNC5C Missense_Mutation p.G175R 0.43 deleterious(0) probably_damaging(0.93) TCGA-DA-A1HY-06 5 10973601 10973601 C T CTNND2 Silent p.T1214T 0.29 TCGA-DA-A1HY-06 5 131305833 131305833 C T ACSL6 Missense_Mutation p.D499N 0.43 deleterious(0) benign(0.167) TCGA-DA-A1HY-06 5 13735983 13735983 C T DNAH5 Silent p.E3838E 0.31 TCGA-DA-A1HY-06 5 13753350 13753350 C T DNAH5 Missense_Mutation p.E3622K 0.13 possibly_damaging(0.621) TCGA-DA-A1HY-06 5 137727228 137727228 C T KDM3B Missense_Mutation p.P636L 0.17 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-DA-A1HY-06 5 13841080 13841080 C T DNAH5 Missense_Mutation p.E1882K 0.34 benign(0.292) TCGA-DA-A1HY-06 5 138456734 138456734 G A SIL1 Silent p.A78A 0.55 TCGA-DA-A1HY-06 5 13864545 13864545 G A DNAH5 Silent p.I1519I 0.23 TCGA-DA-A1HY-06 5 138764372 138764372 C T DNAJC18 Silent p.R76R 0.55 TCGA-DA-A1HY-06 5 139876129 139876129 C T ANKHD1 Missense_Mutation p.S757F 0.48 unknown(0) TCGA-DA-A1HY-06 5 139876130 139876130 C T ANKHD1 Silent p.S757S 0.47 TCGA-DA-A1HY-06 5 140012653 140012653 C T CD14 Splice_Site p.X1_splice 0.47 TCGA-DA-A1HY-06 5 140174819 140174819 C T PCDHA2 Silent p.I90I 0.13 TCGA-DA-A1HY-06 5 140188116 140188116 G A PCDHA4 Silent p.V448V 0.09 TCGA-DA-A1HY-06 5 140222709 140222709 G T PCDHA8 Silent p.S601S 0.18 TCGA-DA-A1HY-06 5 140249718 140249718 G A PCDHA11 Missense_Mutation p.D344N 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A1HY-06 5 140262444 140262444 G A PCDHA13 Silent p.R197R 0.47 TCGA-DA-A1HY-06 5 140347907 140347907 C T PCDHAC2 Missense_Mutation p.T519I 0.66 deleterious(0) possibly_damaging(0.821) TCGA-DA-A1HY-06 5 140348598 140348598 G A PCDHAC2 Silent p.R749R 0.14 TCGA-DA-A1HY-06 5 140389344 140389344 G A PCDHAC1 Missense_Mutation p.G905E 0.42 deleterious(0) possibly_damaging(0.88) TCGA-DA-A1HY-06 5 140431589 140431589 C T PCDHB1 Silent p.F178F 0.58 TCGA-DA-A1HY-06 5 140480269 140480269 G A PCDHB3 Silent p.R12R 0.49 TCGA-DA-A1HY-06 5 140516390 140516390 C T PCDHB5 Silent p.F458F 0.51 TCGA-DA-A1HY-06 5 140531347 140531347 C T PCDHB6 Silent p.S503S 0.52 TCGA-DA-A1HY-06 5 140558286 140558286 C T PCDHB8 Missense_Mutation p.S224F 0.07 deleterious_low_confidence(0.02) benign(0.153) TCGA-DA-A1HY-06 5 140558546 140558546 G A PCDHB8 Missense_Mutation p.E311K 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A1HY-06 5 140564140 140564140 C T PCDHB16 Missense_Mutation p.P669L 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-DA-A1HY-06 5 140580900 140580900 C T PCDHB11 Missense_Mutation p.S518L 0.15 deleterious_low_confidence(0) benign(0.089) TCGA-DA-A1HY-06 5 140581102 140581102 G A PCDHB11 Silent p.L585L 0.41 TCGA-DA-A1HY-06 5 140605035 140605035 C T PCDHB14 Missense_Mutation p.S653L 0.16 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-DA-A1HY-06 5 140731312 140731312 G T PCDHGB1 Silent p.R495R 0.22 TCGA-DA-A1HY-06 5 140731925 140731925 C T PCDHGB1 Missense_Mutation p.L700F 0.50 tolerated(0.06) benign(0.132) TCGA-DA-A1HY-06 5 140744239 140744239 G A PCDHGA5 Missense_Mutation p.M114I 0.50 tolerated_low_confidence(0.1) benign(0.005) TCGA-DA-A1HY-06 5 140745897 140745897 G A PCDHGA5 Missense_Mutation p.R667K 0.14 deleterious_low_confidence(0) benign(0.028) TCGA-DA-A1HY-06 5 140764612 140764612 C T PCDHGA7 Silent p.L716L 0.22 TCGA-DA-A1HY-06 5 145493815 145493815 G A LARS Missense_Mutation p.P1129S 0.11 deleterious(0) probably_damaging(0.91) TCGA-DA-A1HY-06 5 149497276 149497276 G A PDGFRB Silent p.P1014P 0.47 TCGA-DA-A1HY-06 5 150718687 150718687 G A SLC36A2 Silent p.F153F 0.42 TCGA-DA-A1HY-06 5 150946321 150946321 G A FAT2 Silent p.V724V 0.52 TCGA-DA-A1HY-06 5 153029987 153029987 G A GRIA1 Silent p.R196R 0.46 TCGA-DA-A1HY-06 5 156074493 156074493 C T SGCD Silent p.F174F 0.44 TCGA-DA-A1HY-06 5 156770005 156770005 C T FNDC9 Silent p.L180L 0.18 TCGA-DA-A1HY-06 5 156899470 156899470 G A NIPAL4 Silent p.V301V 0.54 TCGA-DA-A1HY-06 5 158585993 158585993 G A RNF145 Silent p.G589G 0.14 TCGA-DA-A1HY-06 5 159682681 159682681 G A CCNJL Silent p.V254V 0.12 TCGA-DA-A1HY-06 5 160758022 160758022 G A GABRB2 Silent p.F315F 0.38 TCGA-DA-A1HY-06 5 167850831 167850831 C T WWC1 Missense_Mutation p.S523F 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-DA-A1HY-06 5 168149295 168149295 G A SLIT3 Missense_Mutation p.H817Y 0.33 tolerated(1) benign(0.009) TCGA-DA-A1HY-06 5 173182 173182 G A PLEKHG4B Silent p.K1051K 0.36 TCGA-DA-A1HY-06 5 176025273 176025273 G A GPRIN1 Silent p.P521P 0.43 TCGA-DA-A1HY-06 5 182343 182343 G A PLEKHG4B Missense_Mutation p.E1241K 0.33 deleterious(0) possibly_damaging(0.811) TCGA-DA-A1HY-06 5 31422943 31422943 G A DROSHA Silent p.L1124L 0.26 TCGA-DA-A1HY-06 5 32312901 32312901 G A MTMR12 Missense_Mutation p.A15V 0.29 tolerated(0.11) benign(0.073) TCGA-DA-A1HY-06 5 33881544 33881544 G A ADAMTS12 Missense_Mutation p.P57S 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 5 36049231 36049231 C T UGT3A2 Silent p.V201V 0.35 TCGA-DA-A1HY-06 5 427994 427994 C T AHRR Missense_Mutation p.P283S 0.30 deleterious(0.03) possibly_damaging(0.668) TCGA-DA-A1HY-06 5 6312573 6312573 G A CTD-2324F15.2 RNA 0.62 TCGA-DA-A1HY-06 5 6633927 6633927 C T SRD5A1 Missense_Mutation p.R80C 0.26 tolerated(0.07) possibly_damaging(0.608) TCGA-DA-A1HY-06 5 72189461 72189461 C T TNPO1 Nonsense_Mutation p.R692* 0.42 TCGA-DA-A1HY-06 5 73205660 73205660 G A ARHGEF28 Missense_Mutation p.G1529S 0.36 tolerated(0.56) benign(0.001) TCGA-DA-A1HY-06 5 89925345 89925345 T G GPR98 Missense_Mutation p.F610V 0.35 possibly_damaging(0.587) TCGA-DA-A1HY-06 5 9063201 9063201 G A SEMA5A Silent p.F772F 0.36 TCGA-DA-A1HY-06 6 105474282 105474282 G C LIN28B Missense_Mutation p.G103A 0.52 tolerated(0.09) possibly_damaging(0.511) TCGA-DA-A1HY-06 6 116442961 116442961 C T COL10A1 Silent p.G106G 0.60 TCGA-DA-A1HY-06 6 127797362 127797362 C T SOGA3 Silent p.R603R 0.57 TCGA-DA-A1HY-06 6 132641792 132641792 C T MOXD1 Silent p.T447T 0.45 TCGA-DA-A1HY-06 6 136599747 136599747 C T BCLAF1 Missense_Mutation p.G91D 0.26 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1HY-06 6 143091221 143091221 G A HIVEP2 Missense_Mutation p.P1552L 0.69 tolerated(0.3) benign(0.002) TCGA-DA-A1HY-06 6 144269402 144269402 G A PLAGL1 5'UTR 0.53 TCGA-DA-A1HY-06 6 151161517 151161517 A G PLEKHG1 Missense_Mutation p.R1215G 0.62 deleterious(0.04) benign(0.006) TCGA-DA-A1HY-06 6 154587079 154587079 C T IPCEF1 Translation_Start_Site p.M1? 0.68 tolerated_low_confidence(0.07) benign(0) TCGA-DA-A1HY-06 6 160579578 160579578 C T SLC22A1 Silent p.Y543Y 0.55 TCGA-DA-A1HY-06 6 167549877 167549877 C T CCR6 Silent p.Y53Y 0.70 TCGA-DA-A1HY-06 6 26426749 26426749 C T BTN2A3P Intron 0.38 TCGA-DA-A1HY-06 6 26506938 26506938 G A BTN1A1 Nonsense_Mutation p.W246* 0.35 TCGA-DA-A1HY-06 6 26597288 26597288 G A ABT1 Silent p.E26E 0.41 TCGA-DA-A1HY-06 6 29342287 29342287 G A OR12D3 Missense_Mutation p.R260C 0.29 tolerated(0.05) benign(0.16) TCGA-DA-A1HY-06 6 30525980 30525980 C T PRR3 Missense_Mutation p.P54S 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.857) TCGA-DA-A1HY-06 6 311939 311939 G A DUSP22 Missense_Mutation p.D39N 0.14 tolerated(0.25) probably_damaging(0.979) TCGA-DA-A1HY-06 6 31704096 31704096 G A CLIC1 5'UTR 0.32 TCGA-DA-A1HY-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.45 TCGA-DA-A1HY-06 6 31928311 31928311 C T SKIV2L Missense_Mutation p.P153S 0.35 deleterious(0.01) probably_damaging(1) TCGA-DA-A1HY-06 6 31929110 31929110 C T SKIV2L Missense_Mutation p.P246S 0.38 tolerated(0.47) benign(0) TCGA-DA-A1HY-06 6 31996608 31996608 G A C4B Silent p.V1123V 0.42 TCGA-DA-A1HY-06 6 32007175 32007175 G A CYP21A2 Missense_Mutation p.E164K 0.20 deleterious(0.01) possibly_damaging(0.854) TCGA-DA-A1HY-06 6 32188644 32188644 G A NOTCH4 Missense_Mutation p.P271S 0.36 tolerated(0.73) benign(0.217) TCGA-DA-A1HY-06 6 32803453 32803453 G A TAP2 Nonsense_Mutation p.Q236* 0.24 TCGA-DA-A1HY-06 6 32803454 32803454 G A TAP2 Silent p.R235R 0.24 TCGA-DA-A1HY-06 6 33156166 33156166 G A COL11A2 Silent p.A193A 0.26 TCGA-DA-A1HY-06 6 35547853 35547853 T C FKBP5 Missense_Mutation p.K329R 0.36 tolerated(0.16) possibly_damaging(0.494) TCGA-DA-A1HY-06 6 38885838 38885838 G A DNAH8 Silent p.G3265G 0.25 TCGA-DA-A1HY-06 6 41010893 41010893 G T TSPO2 Missense_Mutation p.V57L 0.28 deleterious(0.01) benign(0.009) TCGA-DA-A1HY-06 6 46977077 46977077 C T GPR110 Missense_Mutation p.M698I 0.59 tolerated(0.07) possibly_damaging(0.559) TCGA-DA-A1HY-06 6 49803098 49803098 C T CRISP1 Silent p.L227L 0.56 TCGA-DA-A1HY-06 6 51524127 51524127 G A PKHD1 Silent p.H3599H 0.68 TCGA-DA-A1HY-06 6 51524128 51524128 T A PKHD1 Missense_Mutation p.H3599L 0.67 tolerated(0.14) benign(0.006) TCGA-DA-A1HY-06 6 51890235 51890235 G A PKHD1 Missense_Mutation p.S1458F 0.62 deleterious(0.02) benign(0.252) TCGA-DA-A1HY-06 6 51890237 51890237 G A PKHD1 Silent p.F1457F 0.64 TCGA-DA-A1HY-06 6 52878705 52878705 G A ICK Missense_Mutation p.P303S 0.67 tolerated(0.48) benign(0.001) TCGA-DA-A1HY-06 6 7580141 7580141 G A DSP Missense_Mutation p.D1240N 0.37 possibly_damaging(0.505) TCGA-DA-A1HY-06 6 90605621 90605621 A C GJA10 Silent p.T478T 0.66 TCGA-DA-A1HY-06 7 100684337 100684337 A G MUC17 Missense_Mutation p.T3214A 0.56 possibly_damaging(0.766) TCGA-DA-A1HY-06 7 100731662 100731662 G A TRIM56 Missense_Mutation p.G357R 0.25 tolerated(0.07) benign(0.008) TCGA-DA-A1HY-06 7 101847763 101847763 C T CUX1 Silent p.I1011I 0.23 TCGA-DA-A1HY-06 7 101870745 101870745 C T CUX1 Missense_Mutation p.P1088S 0.18 deleterious(0.03) unknown(0) TCGA-DA-A1HY-06 7 102097854 102097854 C T ALKBH4 Missense_Mutation p.G299E 0.71 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 7 102574540 102574540 C T LRRC17 Silent p.L60L 0.54 TCGA-DA-A1HY-06 7 103216072 103216072 G A RELN Missense_Mutation p.S1409F 0.19 deleterious(0.02) possibly_damaging(0.551) TCGA-DA-A1HY-06 7 106509723 106509723 G A PIK3CG Missense_Mutation p.E573K 0.24 tolerated(0.14) benign(0.348) TCGA-DA-A1HY-06 7 123517118 123517118 C T HYAL4 Missense_Mutation p.A452V 0.19 tolerated(0.11) benign(0.002) TCGA-DA-A1HY-06 7 126544666 126544666 T G GRM8 Missense_Mutation p.K267Q 0.17 tolerated(0.29) benign(0.09) TCGA-DA-A1HY-06 7 128480651 128480651 C T FLNC Silent p.F533F 0.23 TCGA-DA-A1HY-06 7 129064740 129064740 C T AHCYL2 Missense_Mutation p.S529F 0.26 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HY-06 7 129756408 129756408 C T KLHDC10 Missense_Mutation p.P126L 0.21 deleterious(0.04) probably_damaging(0.956) TCGA-DA-A1HY-06 7 130025022 130025022 T C CPA1 Missense_Mutation p.Y275H 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 7 132192482 132192482 C T PLXNA4 Missense_Mutation p.R324K 0.25 tolerated(0.31) benign(0.006) TCGA-DA-A1HY-06 7 138433924 138433924 C T ATP6V0A4 Missense_Mutation p.E390K 0.57 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-DA-A1HY-06 7 141408769 141408769 G A WEE2 Missense_Mutation p.E71K 0.50 tolerated(0.52) benign(0.004) TCGA-DA-A1HY-06 7 141750058 141750058 C T MGAM Missense_Mutation p.L871F 0.24 tolerated(0.15) benign(0.063) TCGA-DA-A1HY-06 7 142001079 142001079 C A TRBV2 Silent p.I24I 0.21 TCGA-DA-A1HY-06 7 142008704 142008704 G A TRBV3-1 Silent p.K59K 0.18 TCGA-DA-A1HY-06 7 143771362 143771362 C T OR2A25 Missense_Mutation p.P17L 0.23 tolerated(0.38) benign(0.038) TCGA-DA-A1HY-06 7 148801946 148801946 G A ZNF425 Silent p.F339F 0.17 TCGA-DA-A1HY-06 7 149419937 149419937 C T KRBA1 Missense_Mutation p.P221L 0.26 deleterious(0) probably_damaging(0.93) TCGA-DA-A1HY-06 7 149558490 149558490 C T ZNF862 Silent p.D747D 0.22 TCGA-DA-A1HY-06 7 151372516 151372516 G A PRKAG2 Missense_Mutation p.P225L 0.51 tolerated(0.19) benign(0.001) TCGA-DA-A1HY-06 7 151716805 151716805 G A GALNTL5 Silent p.R417R 0.60 TCGA-DA-A1HY-06 7 154684471 154684471 G A DPP6 3'UTR 0.22 TCGA-DA-A1HY-06 7 20739546 20739546 C T ABCB5 Silent p.F751F 0.61 TCGA-DA-A1HY-06 7 21747425 21747425 C T DNAH11 Missense_Mutation p.H2226Y 0.16 possibly_damaging(0.786) TCGA-DA-A1HY-06 7 31622797 31622797 G A CCDC129 Missense_Mutation p.G433E 0.18 tolerated(0.15) possibly_damaging(0.713) TCGA-DA-A1HY-06 7 31855568 31855568 C T PDE1C Missense_Mutation p.E655K 0.55 tolerated_low_confidence(0.07) benign(0.01) TCGA-DA-A1HY-06 7 32209506 32209506 C T PDE1C Missense_Mutation p.E67K 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.629) TCGA-DA-A1HY-06 7 34851472 34851472 G A NPSR1 Missense_Mutation p.G159R 0.23 tolerated(0.2) benign(0.178) TCGA-DA-A1HY-06 7 34884512 34884512 G A NPSR1 Silent p.G254G 0.51 TCGA-DA-A1HY-06 7 36194646 36194646 C T EEPD1 Missense_Mutation p.P238L 0.20 deleterious(0.01) benign(0.113) TCGA-DA-A1HY-06 7 39125506 39125506 G A POU6F2 Missense_Mutation p.R22Q 0.61 deleterious_low_confidence(0) benign(0.103) TCGA-DA-A1HY-06 7 41729232 41729232 C T INHBA 3'UTR 0.29 TCGA-DA-A1HY-06 7 41729272 41729272 G A INHBA Silent p.I419I 0.50 TCGA-DA-A1HY-06 7 47947754 47947754 G A PKD1L1 Missense_Mutation p.A441V 0.51 tolerated(0.19) benign(0.053) TCGA-DA-A1HY-06 7 72286026 72286026 G A TYW1B Missense_Mutation p.S57F 0.49 deleterious(0.01) possibly_damaging(0.492) TCGA-DA-A1HY-06 7 73245407 73245407 C T CLDN4 5'UTR 0.47 TCGA-DA-A1HY-06 7 74211528 74211528 G A GTF2IRD2 Nonsense_Mutation p.Q775* 0.55 TCGA-DA-A1HY-06 7 7491972 7491972 C T COL28A1 Missense_Mutation p.G496E 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 7 77212886 77212886 A C PTPN12 Silent p.P100P 0.60 TCGA-DA-A1HY-06 7 79082730 79082730 G A MAGI2 5'UTR 0.70 TCGA-DA-A1HY-06 7 82453632 82453632 G A PCLO Missense_Mutation p.S4839F 0.57 unknown(0) TCGA-DA-A1HY-06 7 82584171 82584171 G A PCLO Missense_Mutation p.S2033F 0.53 unknown(0) TCGA-DA-A1HY-06 7 87041264 87041264 G A ABCB4 Nonsense_Mutation p.R957* 0.66 TCGA-DA-A1HY-06 7 87407231 87407231 G A RUNDC3B Missense_Mutation p.E323K 0.20 tolerated(0.27) benign(0.004) TCGA-DA-A1HY-06 7 8791266 8791266 C T NXPH1 Missense_Mutation p.S228F 0.47 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 7 92764785 92764785 G T SAMD9L Missense_Mutation p.P167H 0.61 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 7 98457810 98457810 G A TMEM130 Silent p.F181F 0.51 TCGA-DA-A1HY-06 7 98567828 98567828 G A TRRAP Missense_Mutation p.D2529N 0.25 benign(0.361) TCGA-DA-A1HY-06 7 98609786 98609786 C T TRRAP Silent p.A3796A 0.54 TCGA-DA-A1HY-06 8 103307739 103307739 G A UBR5 Silent p.F1278F 0.49 TCGA-DA-A1HY-06 8 106815026 106815026 G A ZFPM2 Missense_Mutation p.D906N 0.61 deleterious(0.02) benign(0.126) TCGA-DA-A1HY-06 8 106815087 106815087 C T ZFPM2 Missense_Mutation p.S926F 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.606) TCGA-DA-A1HY-06 8 107718959 107718959 G A OXR1 Missense_Mutation p.E405K 0.22 tolerated(0.15) benign(0.071) TCGA-DA-A1HY-06 8 110099909 110099909 G A TRHR Missense_Mutation p.M56I 0.53 deleterious(0) probably_damaging(0.991) TCGA-DA-A1HY-06 8 110457655 110457655 G A PKHD1L1 Missense_Mutation p.G1853R 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 8 110535604 110535604 C T PKHD1L1 Missense_Mutation p.P4158L 0.26 tolerated(0.88) benign(0) TCGA-DA-A1HY-06 8 119592994 119592994 C T SAMD12 Missense_Mutation p.G51E 0.55 tolerated(0.4) benign(0.019) TCGA-DA-A1HY-06 8 121228683 121228683 G A COL14A1 Missense_Mutation p.G564D 0.46 deleterious(0.04) probably_damaging(0.933) TCGA-DA-A1HY-06 8 121298143 121298143 G A COL14A1 Silent p.G1337G 0.44 TCGA-DA-A1HY-06 8 126379036 126379036 C T NSMCE2 Missense_Mutation p.T218M 0.30 deleterious(0.03) benign(0.069) TCGA-DA-A1HY-06 8 131797658 131797658 C T ADCY8 Missense_Mutation p.A1042T 0.48 deleterious(0) benign(0.008) TCGA-DA-A1HY-06 8 133142140 133142140 G A KCNQ3 Missense_Mutation p.T663I 0.33 tolerated(0.3) benign(0.16) TCGA-DA-A1HY-06 8 134050680 134050680 G A SLA 3'UTR 0.26 TCGA-DA-A1HY-06 8 143425608 143425608 G A TSNARE1 Missense_Mutation p.A155V 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.491) TCGA-DA-A1HY-06 8 143959234 143959234 C T CYP11B1 Intron 0.06 TCGA-DA-A1HY-06 8 143996221 143996221 G A CYP11B2 Silent p.S233S 0.57 TCGA-DA-A1HY-06 8 145722742 145722742 G A PPP1R16A Silent p.R55R 0.37 TCGA-DA-A1HY-06 8 17823906 17823906 C T PCM1 Missense_Mutation p.P1049S 0.30 tolerated(0.16) probably_damaging(0.999) TCGA-DA-A1HY-06 8 17823907 17823907 C T PCM1 Missense_Mutation p.P1049L 0.30 deleterious(0) probably_damaging(0.999) TCGA-DA-A1HY-06 8 22058756 22058756 C T BMP1 Intron 0.27 TCGA-DA-A1HY-06 8 22069337 22069337 C T BMP1 3'UTR 0.33 TCGA-DA-A1HY-06 8 22777733 22777733 C T PEBP4 Nonsense_Mutation p.W74* 0.24 TCGA-DA-A1HY-06 8 22777734 22777734 C T PEBP4 Nonsense_Mutation p.W74* 0.24 TCGA-DA-A1HY-06 8 24339714 24339714 A G ADAM7 Silent p.E255E 0.68 TCGA-DA-A1HY-06 8 24773136 24773136 G A NEFM Missense_Mutation p.E367K 0.29 deleterious(0) unknown(0) TCGA-DA-A1HY-06 8 25364179 25364179 C T CDCA2 Missense_Mutation p.S666F 0.39 deleterious(0.03) probably_damaging(0.936) TCGA-DA-A1HY-06 8 27737091 27737091 C T SCARA5 Missense_Mutation p.G449E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1HY-06 8 2832061 2832061 G A CSMD1 Silent p.S2884S 0.42 TCGA-DA-A1HY-06 8 28575056 28575056 C T EXTL3 Missense_Mutation p.H494Y 0.27 tolerated(0.12) possibly_damaging(0.477) TCGA-DA-A1HY-06 8 30464574 30464574 C T GTF2E2 Missense_Mutation p.E215K 0.42 deleterious(0.02) possibly_damaging(0.756) TCGA-DA-A1HY-06 8 36780013 36780013 C T KCNU1 Missense_Mutation p.P868S 0.29 tolerated(0.43) possibly_damaging(0.505) TCGA-DA-A1HY-06 8 41791730 41791730 G A KAT6A Silent p.P1336P 0.31 TCGA-DA-A1HY-06 8 42587513 42587513 C T CHRNB3 Missense_Mutation p.R355C 0.29 deleterious(0.04) benign(0.032) TCGA-DA-A1HY-06 8 48749885 48749885 A G PRKDC Missense_Mutation p.I2549T 0.32 benign(0.024) TCGA-DA-A1HY-06 8 52320904 52320904 C T PXDNL Missense_Mutation p.E1094K 0.52 deleterious(0) probably_damaging(0.997) TCGA-DA-A1HY-06 8 55533703 55533703 C T RP1 Silent p.S59S 0.46 TCGA-DA-A1HY-06 8 56015030 56015030 C T XKR4 5'UTR 0.32 TCGA-DA-A1HY-06 8 57079507 57079507 G A PLAG1 Silent p.L266L 0.45 TCGA-DA-A1HY-06 8 59329508 59329508 C T UBXN2B Nonsense_Mutation p.Q62* 0.48 TCGA-DA-A1HY-06 8 69012065 69012065 C T PREX2 Missense_Mutation p.S901F 0.37 deleterious(0) benign(0.259) TCGA-DA-A1HY-06 8 69552622 69552622 G A C8orf34 Missense_Mutation p.D373N 0.25 tolerated(0.1) benign(0.23) TCGA-DA-A1HY-06 8 70981529 70981529 C T PRDM14 Silent p.G189G 0.56 TCGA-DA-A1HY-06 8 74917094 74917094 G A LY96 Missense_Mutation p.G59E 0.30 tolerated(0.11) probably_damaging(1) TCGA-DA-A1HY-06 8 82644926 82644926 C T CHMP4C Missense_Mutation p.P22L 0.54 deleterious(0.03) benign(0.153) TCGA-DA-A1HY-06 8 85774560 85774560 C T RALYL Missense_Mutation p.P161L 0.23 deleterious(0.05) benign(0.046) TCGA-DA-A1HY-06 8 86354352 86354352 C T CA3 Missense_Mutation p.L95F 0.42 tolerated(1) possibly_damaging(0.833) TCGA-DA-A1HY-06 8 89128840 89128840 G A MMP16 Missense_Mutation p.R327W 0.26 tolerated(0.05) benign(0.017) TCGA-DA-A1HY-06 8 95140358 95140358 G A CDH17 3'UTR 0.50 TCGA-DA-A1HY-06 8 96070152 96070152 G A NDUFAF6 Missense_Mutation p.R330K 0.43 tolerated(0.44) benign(0.016) TCGA-DA-A1HY-06 9 101068621 101068621 C G GABBR2 Missense_Mutation p.G671R 0.32 deleterious(0) probably_damaging(0.953) TCGA-DA-A1HY-06 9 102866790 102866790 T C INVS 5'UTR 0.28 TCGA-DA-A1HY-06 9 104130542 104130542 G A BAAT Missense_Mutation p.R177W 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1HY-06 9 113197561 113197561 C T SVEP1 Silent p.V1616V 0.46 TCGA-DA-A1HY-06 9 113704254 113704254 G A LPAR1 Silent p.F80F 0.37 TCGA-DA-A1HY-06 9 115805766 115805766 C A ZFP37 Nonsense_Mutation p.E378* 0.37 TCGA-DA-A1HY-06 9 116132216 116132216 C T BSPRY Missense_Mutation p.R335C 0.32 tolerated(0.2) benign(0.014) TCGA-DA-A1HY-06 9 116186556 116186556 C T C9orf43 Missense_Mutation p.S256F 0.39 deleterious(0) probably_damaging(0.998) TCGA-DA-A1HY-06 9 117085376 117085376 C T ORM1 5'UTR 0.09 TCGA-DA-A1HY-06 9 119109456 119109456 C T PAPPA Missense_Mutation p.S1311F 0.38 tolerated(0.1) possibly_damaging(0.788) TCGA-DA-A1HY-06 9 119568061 119568061 G A ASTN2 Missense_Mutation p.S698F 0.32 deleterious(0) unknown(0) TCGA-DA-A1HY-06 9 119903704 119903704 C T ASTN2 Intron 0.41 TCGA-DA-A1HY-06 9 121976406 121976406 A G BRINP1 Missense_Mutation p.L238P 0.42 deleterious(0.01) probably_damaging(0.979) TCGA-DA-A1HY-06 9 125273492 125273492 G A OR1J2 Missense_Mutation p.E138K 0.42 tolerated_low_confidence(0.12) benign(0.003) TCGA-DA-A1HY-06 9 125315812 125315812 C T OR1N2 Missense_Mutation p.L122F 0.40 tolerated(0.33) possibly_damaging(0.66) TCGA-DA-A1HY-06 9 125330436 125330436 G A OR1L8 Silent p.A107A 0.34 TCGA-DA-A1HY-06 9 137644476 137644476 G A COL5A1 Silent p.G568G 0.67 TCGA-DA-A1HY-06 9 21332964 21332964 A G KLHL9 3'UTR 0.42 TCGA-DA-A1HY-06 9 21971116 21971116 G A CDKN2A Missense_Mutation p.P81L 0.63 deleterious(0) probably_damaging(0.981) TCGA-DA-A1HY-06 9 23731111 23731111 C T ELAVL2 Missense_Mutation p.G81E 0.37 deleterious(0) probably_damaging(0.957) TCGA-DA-A1HY-06 9 33062139 33062139 G A SMU1 Missense_Mutation p.P180S 0.30 tolerated(0.07) benign(0.056) TCGA-DA-A1HY-06 9 34371962 34371962 G A KIAA1161 Missense_Mutation p.A293V 0.25 tolerated(0.29) benign(0.112) TCGA-DA-A1HY-06 9 35741007 35741007 C T GBA2 Missense_Mutation p.E281K 0.44 tolerated(0.05) possibly_damaging(0.663) TCGA-DA-A1HY-06 9 35957626 35957626 G A OR2S2 Missense_Mutation p.S157F 0.34 deleterious(0.01) benign(0.114) TCGA-DA-A1HY-06 9 74865707 74865707 C T GDA Missense_Mutation p.P468L 0.47 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1HY-06 9 77282779 77282779 A C RORB Missense_Mutation p.E358A 0.38 deleterious(0.02) probably_damaging(0.926) TCGA-DA-A1HY-06 9 84532834 84532834 C T SPATA31D5P RNA 0.56 TCGA-DA-A1HY-06 9 97356017 97356017 G A FBP2 5'UTR 0.33 TCGA-DA-A1HY-06 X 100608315 100608315 G A BTK Missense_Mutation p.S592F 0.75 deleterious(0) probably_damaging(0.976) TCGA-DA-A1HY-06 X 109696356 109696356 G A RGAG1 Silent p.V837V 0.77 TCGA-DA-A1HY-06 X 117744240 117744240 C T DOCK11 Silent p.P985P 0.68 TCGA-DA-A1HY-06 X 128724304 128724304 C T OCRL 3'UTR 0.76 TCGA-DA-A1HY-06 X 131208220 131208220 C T MST4 3'UTR 0.60 TCGA-DA-A1HY-06 X 135477634 135477634 C T GPR112 Silent p.T2722T 0.76 TCGA-DA-A1HY-06 X 148798422 148798422 G A MAGEA11 Missense_Mutation p.G426R 0.71 tolerated(0.29) benign(0.002) TCGA-DA-A1HY-06 X 15262543 15262543 A T ASB9 3'UTR 0.76 TCGA-DA-A1HY-06 X 155237263 155237263 G A IL9R Silent p.G321G 0.35 TCGA-DA-A1HY-06 X 3229592 3229592 C T MXRA5 Missense_Mutation p.D2218N 0.76 deleterious(0.04) probably_damaging(0.994) TCGA-DA-A1HY-06 X 3238348 3238348 G A MXRA5 Missense_Mutation p.P1793L 0.74 deleterious(0.01) benign(0.242) TCGA-DA-A1HY-06 X 3240517 3240517 C T MXRA5 Missense_Mutation p.G1070E 0.79 tolerated(0.32) benign(0.003) TCGA-DA-A1HY-06 X 35969374 35969374 C T CXorf22 Silent p.F261F 0.87 TCGA-DA-A1HY-06 X 48934105 48934105 G A WDR45 Silent p.T141T 0.74 TCGA-DA-A1HY-06 X 54264844 54264844 G A WNK3 Silent p.S1315S 0.75 TCGA-DA-A1HY-06 X 591839 591839 T A SHOX Missense_Mutation p.H69Q 0.34 tolerated(0.17) benign(0.328) TCGA-DA-A1HY-06 X 69424192 69424192 G A DGAT2L6 Missense_Mutation p.E229K 0.89 deleterious(0) possibly_damaging(0.529) TCGA-DA-A1HY-06 X 77130979 77130979 G A MAGT1 Missense_Mutation p.S105F 0.66 deleterious(0) probably_damaging(0.992) TCGA-DA-A1HY-06 X 9905572 9905572 C T SHROOM2 Missense_Mutation p.S1329F 0.76 deleterious(0) probably_damaging(0.996) TCGA-DA-A1HY-06 X 99597063 99597063 A G PCDH19 Missense_Mutation p.F896L 0.87 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1HY-06 X 99849347 99849347 G A TNMD Silent p.E137E 0.82 TCGA-DA-A1HY-06 Y 21871433 21871433 G A KDM5D Missense_Mutation p.S949F 0.79 deleterious(0) benign(0.027) TCGA-DA-A1I0-06 10 100195401 100195401 G A HPS1 Silent p.V82V 0.29 TCGA-DA-A1I0-06 10 105800169 105800169 C T COL17A1 Splice_Site p.X901_splice 0.26 TCGA-DA-A1I0-06 10 124591832 124591832 G A CUZD1 Missense_Mutation p.R596W 0.19 tolerated(0.06) benign(0.01) TCGA-DA-A1I0-06 10 127412404 127412404 C T EDRF1 Missense_Mutation p.P137S 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 10 13386800 13386800 G A SEPHS1 Nonsense_Mutation p.Q51* 0.26 TCGA-DA-A1I0-06 10 13386801 13386801 G A SEPHS1 Silent p.F50F 0.26 TCGA-DA-A1I0-06 10 134175040 134175040 C A LRRC27 Missense_Mutation p.P417Q 0.20 tolerated(1) probably_damaging(0.987) TCGA-DA-A1I0-06 10 134218260 134218260 C T PWWP2B Missense_Mutation p.P86S 0.30 tolerated(0.2) benign(0.009) TCGA-DA-A1I0-06 10 17088027 17088027 G T CUBN Silent p.I1132I 0.31 TCGA-DA-A1I0-06 10 25878021 25878021 G A GPR158 Missense_Mutation p.M613I 0.29 tolerated(0.07) benign(0.401) TCGA-DA-A1I0-06 10 26825140 26825140 G A APBB1IP Silent p.K346K 0.28 TCGA-DA-A1I0-06 10 28101451 28101451 C T ARMC4 Missense_Mutation p.R1042K 0.24 tolerated(1) benign(0.004) TCGA-DA-A1I0-06 10 28229730 28229730 G A ARMC4 Missense_Mutation p.A583V 0.16 tolerated(0.23) benign(0.13) TCGA-DA-A1I0-06 10 31137987 31137987 G A ZNF438 Silent p.S449S 0.31 TCGA-DA-A1I0-06 10 43691646 43691646 C T RASGEF1A 3'UTR 0.14 TCGA-DA-A1I0-06 10 43691647 43691647 C T RASGEF1A 3'UTR 0.14 TCGA-DA-A1I0-06 10 48390152 48390152 G A RBP3 Silent p.I242I 0.49 TCGA-DA-A1I0-06 10 49658879 49658879 G A ARHGAP22 Silent p.S447S 0.26 TCGA-DA-A1I0-06 10 51769427 51769427 C T AGAP6 Silent p.S514S 0.28 TCGA-DA-A1I0-06 10 51769428 51769428 C T AGAP6 Missense_Mutation p.R515C 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I0-06 10 52573681 52573681 C T A1CF Missense_Mutation p.G428E 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 10 52575901 52575901 C T A1CF Missense_Mutation p.D344N 0.19 tolerated(0.07) possibly_damaging(0.836) TCGA-DA-A1I0-06 10 55582906 55582906 G A PCDH15 Missense_Mutation p.P1529L 0.15 deleterious_low_confidence(0.03) benign(0.009) TCGA-DA-A1I0-06 10 61834560 61834560 C T ANK3 Missense_Mutation p.D2027N 0.21 benign(0.269) TCGA-DA-A1I0-06 10 63170284 63170284 G A TMEM26 Silent p.L301L 0.25 TCGA-DA-A1I0-06 10 68687178 68687178 C T LRRTM3 Silent p.S168S 0.24 TCGA-DA-A1I0-06 10 68979487 68979487 C T CTNNA3 Missense_Mutation p.V241I 0.23 tolerated(0.86) benign(0.299) TCGA-DA-A1I0-06 10 73826873 73826873 C T SPOCK2 Missense_Mutation p.D239N 0.40 deleterious(0) probably_damaging(0.945) TCGA-DA-A1I0-06 10 75143420 75143420 A - ANXA7 Frame_Shift_Del p.L243* 0.23 TCGA-DA-A1I0-06 10 75276256 75276256 G A USP54 Nonsense_Mutation p.Q1310* 0.17 TCGA-DA-A1I0-06 10 75553447 75553447 C T ZSWIM8 Silent p.P805P 0.23 TCGA-DA-A1I0-06 10 84744883 84744883 G A NRG3 Missense_Mutation p.R538Q 0.21 tolerated(1) benign(0.003) TCGA-DA-A1I0-06 10 88415938 88415938 G A OPN4 Nonsense_Mutation p.W57* 0.35 TCGA-DA-A1I0-06 10 90438420 90438420 A G LIPF Missense_Mutation p.I403M 0.38 tolerated(1) benign(0.025) TCGA-DA-A1I0-06 10 93590705 93590705 C T TNKS2 Missense_Mutation p.P377L 0.29 tolerated(0.24) probably_damaging(0.999) TCGA-DA-A1I0-06 10 96612487 96612487 C T CYP2C19 Intron 0.23 TCGA-DA-A1I0-06 10 96731877 96731877 C T CYP2C9 Missense_Mutation p.P279L 0.31 tolerated(0.08) benign(0) TCGA-DA-A1I0-06 10 98383249 98383249 G A PIK3AP1 Missense_Mutation p.S572F 0.23 tolerated(0.11) possibly_damaging(0.784) TCGA-DA-A1I0-06 11 105797560 105797560 G A GRIA4 Silent p.T647T 0.31 TCGA-DA-A1I0-06 11 105929626 105929626 G A KBTBD3 Missense_Mutation p.R67C 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 11 113669902 113669902 G A USP28 3'UTR 0.29 TCGA-DA-A1I0-06 11 117335788 117335788 C T DSCAML1 Silent p.T1105T 0.22 TCGA-DA-A1I0-06 11 117342657 117342657 G A DSCAML1 Silent p.I1020I 0.22 TCGA-DA-A1I0-06 11 117403167 117403167 G A DSCAML1 Silent p.S254S 0.26 TCGA-DA-A1I0-06 11 118342713 118342713 C T KMT2A Missense_Mutation p.P280L 0.22 probably_damaging(0.991) TCGA-DA-A1I0-06 11 119045723 119045723 C T NLRX1 Missense_Mutation p.R471W 0.29 deleterious(0.03) possibly_damaging(0.847) TCGA-DA-A1I0-06 11 119207129 119207129 C T RNF26 Missense_Mutation p.L433F 0.22 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I0-06 11 122955364 122955364 G A CLMP Nonsense_Mutation p.R82* 0.28 TCGA-DA-A1I0-06 11 12315604 12315604 G A MICALCL Missense_Mutation p.R209Q 0.27 tolerated(0.64) benign(0.008) TCGA-DA-A1I0-06 11 130005576 130005576 C T APLP2 Silent p.P601P 0.32 TCGA-DA-A1I0-06 11 17483345 17483345 C T ABCC8 Missense_Mutation p.E203K 0.26 tolerated(0.79) benign(0.003) TCGA-DA-A1I0-06 11 18428900 18428900 C T LDHA 3'UTR 0.33 TCGA-DA-A1I0-06 11 4470744 4470744 G A OR52K2 Missense_Mutation p.E59K 0.26 tolerated(0.16) benign(0.007) TCGA-DA-A1I0-06 11 4661722 4661722 C T OR51D1 Silent p.I234I 0.32 TCGA-DA-A1I0-06 11 47356715 47356715 G A MYBPC3 Missense_Mutation p.S928L 0.24 deleterious(0.04) possibly_damaging(0.798) TCGA-DA-A1I0-06 11 48238551 48238551 C T OR4B1 Silent p.L64L 0.17 TCGA-DA-A1I0-06 11 5173125 5173125 C T OR52A1 Missense_Mutation p.A159T 0.31 tolerated(0.42) benign(0.008) TCGA-DA-A1I0-06 11 5461833 5461833 C A OR51I1 Silent p.G304G 0.22 TCGA-DA-A1I0-06 11 5530692 5530692 C T UBQLN3 Missense_Mutation p.E33K 0.22 tolerated(0.16) probably_damaging(0.999) TCGA-DA-A1I0-06 11 56043854 56043854 G A OR5T1 Missense_Mutation p.R247K 0.26 tolerated(0.1) benign(0.033) TCGA-DA-A1I0-06 11 56143797 56143797 G A OR8U1 Missense_Mutation p.G233E 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 11 56757063 56757063 C T OR5AK2 Silent p.I225I 0.27 TCGA-DA-A1I0-06 11 57147034 57147034 C T PRG3 Missense_Mutation p.G103E 0.26 deleterious(0) probably_damaging(0.947) TCGA-DA-A1I0-06 11 57983140 57983140 G A OR1S1 Silent p.K308K 0.21 TCGA-DA-A1I0-06 11 58711062 58711062 G A GLYATL1 Missense_Mutation p.G24E 0.23 tolerated_low_confidence(0.12) benign(0.1) TCGA-DA-A1I0-06 11 59812219 59812219 G A OOSP2 Missense_Mutation p.E107K 0.26 tolerated(1) benign(0.001) TCGA-DA-A1I0-06 11 60702200 60702200 C T TMEM132A Silent p.V601V 0.17 TCGA-DA-A1I0-06 11 60785271 60785271 C T CD6 Silent p.N541N 0.12 TCGA-DA-A1I0-06 11 61291958 61291958 G A SYT7 Silent p.V298V 0.20 TCGA-DA-A1I0-06 11 61488210 61488210 C T DAGLA Missense_Mutation p.S52F 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A1I0-06 11 64702576 64702576 C G GPHA2 Missense_Mutation p.G59R 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 11 65265627 65265627 T C MALAT1 RNA 0.41 TCGA-DA-A1I0-06 11 65271563 65271563 G T MALAT1 RNA 0.17 TCGA-DA-A1I0-06 11 66191958 66191958 C T NPAS4 Missense_Mutation p.P533S 0.20 tolerated_low_confidence(0.15) benign(0.004) TCGA-DA-A1I0-06 11 67406997 67406997 G A TBX10 5'UTR 0.38 TCGA-DA-A1I0-06 11 6816727 6816727 C T OR6A2 Silent p.E71E 0.26 TCGA-DA-A1I0-06 11 69482185 69482185 G A ORAOV1 3'UTR 0.44 TCGA-DA-A1I0-06 11 69588129 69588129 C T FGF4 Missense_Mutation p.G190E 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 11 71942228 71942228 C T INPPL1 Missense_Mutation p.R498C 0.33 deleterious(0) probably_damaging(0.98) TCGA-DA-A1I0-06 11 73849826 73849826 C T C2CD3 Silent p.K298K 0.33 TCGA-DA-A1I0-06 11 74000171 74000171 C T P4HA3 Missense_Mutation p.G241E 0.18 deleterious(0) probably_damaging(0.963) TCGA-DA-A1I0-06 11 75316844 75316844 G A MAP6 Intron 0.27 TCGA-DA-A1I0-06 11 77934455 77934455 T C GAB2 Intron 0.34 TCGA-DA-A1I0-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.24 tolerated(0.09) possibly_damaging(0.653) TCGA-DA-A1I0-06 12 10010225 10010225 G A CLEC2B Nonsense_Mutation p.R29* 0.31 TCGA-DA-A1I0-06 12 1006708 1006708 C T WNK1 Silent p.T2103T 0.15 TCGA-DA-A1I0-06 12 119968748 119968748 G A CCDC60 Silent p.V477V 0.29 TCGA-DA-A1I0-06 12 122437850 122437850 G A WDR66 Missense_Mutation p.G1079S 0.38 deleterious(0.01) possibly_damaging(0.889) TCGA-DA-A1I0-06 12 122674873 122674873 C T LRRC43 Missense_Mutation p.P287S 0.27 tolerated(0.12) benign(0.165) TCGA-DA-A1I0-06 12 129559455 129559455 G A TMEM132D Silent p.I755I 0.23 TCGA-DA-A1I0-06 12 130827617 130827617 G A PIWIL1 Missense_Mutation p.G54E 0.30 tolerated(0.15) possibly_damaging(0.53) TCGA-DA-A1I0-06 12 18841097 18841097 G A PLCZ1 Missense_Mutation p.S506L 0.25 deleterious(0) benign(0.016) TCGA-DA-A1I0-06 12 20833083 20833083 C T PDE3A Nonsense_Mutation p.Q1102* 0.23 TCGA-DA-A1I0-06 12 21998572 21998572 C T ABCC9 Missense_Mutation p.E1021K 0.28 tolerated(0.42) benign(0.001) TCGA-DA-A1I0-06 12 275031 275031 G A IQSEC3 Silent p.T982T 0.22 TCGA-DA-A1I0-06 12 27529307 27529307 A T ARNTL2 Missense_Mutation p.M105L 0.32 tolerated(0.15) benign(0.001) TCGA-DA-A1I0-06 12 48134791 48134791 C T RAPGEF3 Silent p.V652V 0.38 TCGA-DA-A1I0-06 12 48391395 48391395 A G COL2A1 Silent p.L175L 0.25 TCGA-DA-A1I0-06 12 52986727 52986727 C T KRT72 Silent p.V217V 0.20 TCGA-DA-A1I0-06 12 53088463 53088463 C T KRT77 Missense_Mutation p.E343K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I0-06 12 55028661 55028661 T G LACRT 5'UTR 0.14 TCGA-DA-A1I0-06 12 55759259 55759259 T A OR6C75 Missense_Mutation p.M122K 0.29 deleterious_low_confidence(0) benign(0.016) TCGA-DA-A1I0-06 12 56088274 56088274 C T ITGA7 Silent p.G774G 0.26 TCGA-DA-A1I0-06 12 56583179 56583179 G A SMARCC2 Nonsense_Mutation p.Q23* 0.20 TCGA-DA-A1I0-06 12 66703601 66703601 A T HELB Missense_Mutation p.Y298F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I0-06 12 7046114 7046114 G A ATN1 Missense_Mutation p.G562S 0.25 probably_damaging(0.996) TCGA-DA-A1I0-06 12 7945557 7945557 C T NANOG Missense_Mutation p.P55S 0.22 tolerated(0.22) benign(0.057) TCGA-DA-A1I0-06 12 9013766 9013766 G A A2ML1 Silent p.K1125K 0.31 TCGA-DA-A1I0-06 12 91449902 91449902 G A KERA Missense_Mutation p.P53S 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 12 93139342 93139342 G A PLEKHG7 Missense_Mutation p.R97K 0.23 tolerated(0.05) benign(0.085) TCGA-DA-A1I0-06 13 109496834 109496834 C T MYO16 Missense_Mutation p.P392L 0.25 tolerated(0.64) benign(0.002) TCGA-DA-A1I0-06 13 22275467 22275467 G A FGF9 Missense_Mutation p.E174K 0.18 tolerated(0.37) benign(0.002) TCGA-DA-A1I0-06 13 25284731 25284731 G A ATP12A Missense_Mutation p.R972K 0.29 tolerated(0.97) benign(0.064) TCGA-DA-A1I0-06 13 25367241 25367241 G A RNF17 Missense_Mutation p.E333K 0.18 tolerated(0.08) benign(0) TCGA-DA-A1I0-06 13 27255347 27255347 C T WASF3 Silent p.A291A 0.29 TCGA-DA-A1I0-06 13 31227350 31227350 C G USPL1 Missense_Mutation p.A435G 0.20 deleterious(0.02) benign(0.108) TCGA-DA-A1I0-06 13 32527436 32527436 G A EEF1DP3 RNA 0.21 TCGA-DA-A1I0-06 13 42263510 42263510 C T VWA8 Missense_Mutation p.V1371I 0.19 tolerated(0.3) benign(0.008) TCGA-DA-A1I0-06 13 61985337 61985337 C T PCDH20 3'UTR 0.21 TCGA-DA-A1I0-06 13 76432095 76432095 G A LMO7 Silent p.T1368T 0.27 TCGA-DA-A1I0-06 13 86369385 86369385 C T SLITRK6 Missense_Mutation p.G420D 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 13 93518536 93518536 G A GPC5 Nonsense_Mutation p.W521* 0.21 TCGA-DA-A1I0-06 13 99127538 99127538 G A STK24 Silent p.L147L 0.24 TCGA-DA-A1I0-06 13 99630118 99630118 C T DOCK9 Missense_Mutation p.E16K 0.26 tolerated_low_confidence(0.08) benign(0.154) TCGA-DA-A1I0-06 14 101201272 101201272 C T DLK1 3'UTR 0.21 TCGA-DA-A1I0-06 14 102509004 102509004 C T DYNC1H1 Silent p.I4144I 0.25 TCGA-DA-A1I0-06 14 103394775 103394775 G A AMN Missense_Mutation p.D74N 0.50 tolerated(0.61) benign(0.105) TCGA-DA-A1I0-06 14 106311939 106311939 C T IGHD Missense_Mutation p.V25I 0.30 tolerated_low_confidence(0.29) benign(0.121) TCGA-DA-A1I0-06 14 106321636 106321636 C T IGHM Missense_Mutation p.D200N 0.18 deleterious(0.01) benign(0.376) TCGA-DA-A1I0-06 14 106691718 106691718 C T IGHV3-21 Missense_Mutation p.M102I 0.20 deleterious_low_confidence(0.01) benign(0.235) TCGA-DA-A1I0-06 14 106691761 106691761 G A IGHV3-21 Missense_Mutation p.T88I 0.25 deleterious_low_confidence(0.02) benign(0.433) TCGA-DA-A1I0-06 14 19553800 19553800 C T POTEG Silent p.F128F 0.02 TCGA-DA-A1I0-06 14 19988221 19988221 C T POTEM 3'UTR 0.24 TCGA-DA-A1I0-06 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.13 deleterious(0) possibly_damaging(0.796) TCGA-DA-A1I0-06 14 21991801 21991801 G A SALL2 Silent p.A687A 0.29 TCGA-DA-A1I0-06 14 33015385 33015385 G A AKAP6 Missense_Mutation p.R509Q 0.30 tolerated(0.27) benign(0.001) TCGA-DA-A1I0-06 14 55836573 55836573 C T ATG14 Missense_Mutation p.E415K 0.27 tolerated(0.69) benign(0.024) TCGA-DA-A1I0-06 14 57268851 57268852 - GATG OTX2 Frame_Shift_Ins p.S166Hfs*30 0.22 TCGA-DA-A1I0-06 14 58955403 58955403 C T KIAA0586 Missense_Mutation p.P1251S 0.33 tolerated(0.33) benign(0.228) TCGA-DA-A1I0-06 14 60951769 60951769 C T C14orf39 Missense_Mutation p.D10N 0.27 tolerated(0.06) possibly_damaging(0.908) TCGA-DA-A1I0-06 14 62014569 62014569 C T RP11-47I22.4 Missense_Mutation p.H129Y 0.27 deleterious(0.01) benign(0.071) TCGA-DA-A1I0-06 14 67669881 67669881 C T FAM71D Missense_Mutation p.S77F 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A1I0-06 14 67669922 67669922 C T FAM71D Missense_Mutation p.H91Y 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1I0-06 14 68250148 68250148 G T ZFYVE26 Silent p.R1241R 0.30 TCGA-DA-A1I0-06 14 74188197 74188197 G A ELMSAN1 Missense_Mutation p.P914S 0.22 tolerated(0.25) benign(0.342) TCGA-DA-A1I0-06 14 75018996 75018996 G A LTBP2 Silent p.I431I 0.28 TCGA-DA-A1I0-06 14 80130180 80130180 G A NRXN3 Silent p.E795E 0.33 TCGA-DA-A1I0-06 14 81609529 81609529 A T TSHR Missense_Mutation p.E376V 0.28 deleterious(0.02) benign(0.373) TCGA-DA-A1I0-06 14 93429102 93429102 G A ITPK1 Missense_Mutation p.P153S 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 15 25207258 25207258 C T SNRPN Intron 0.25 TCGA-DA-A1I0-06 15 34021187 34021187 G A RYR3 Missense_Mutation p.G2388E 0.20 probably_damaging(0.962) TCGA-DA-A1I0-06 15 35085524 35085524 A T ACTC1 Missense_Mutation p.F126I 0.18 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-DA-A1I0-06 15 35085547 35085547 C T ACTC1 Missense_Mutation p.R118Q 0.20 deleterious_low_confidence(0.03) probably_damaging(0.959) TCGA-DA-A1I0-06 15 40476069 40476069 G A BUB1B Missense_Mutation p.G246R 0.25 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I0-06 15 40594798 40594798 G A PLCB2 Missense_Mutation p.R82W 0.22 deleterious(0) probably_damaging(0.926) TCGA-DA-A1I0-06 15 40594799 40594799 G A PLCB2 Silent p.L81L 0.24 TCGA-DA-A1I0-06 15 41228901 41228901 G A DLL4 Silent p.S572S 0.19 TCGA-DA-A1I0-06 15 42441939 42441939 C T PLA2G4F Missense_Mutation p.G344E 0.37 tolerated(0.36) benign(0.01) TCGA-DA-A1I0-06 15 44093371 44093371 A G HYPK Silent p.K76K 0.25 TCGA-DA-A1I0-06 15 44892813 44892813 G A SPG11 Missense_Mutation p.P1180S 0.28 deleterious(0.02) probably_damaging(0.932) TCGA-DA-A1I0-06 15 49860462 49860462 G A FAM227B Nonsense_Mutation p.R243* 0.21 TCGA-DA-A1I0-06 15 52672077 52672077 G A MYO5A Silent p.L681L 0.29 TCGA-DA-A1I0-06 15 54306371 54306371 C T UNC13C Missense_Mutation p.S424F 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A1I0-06 15 57745899 57745899 G A CGNL1 Missense_Mutation p.M691I 0.11 tolerated(0.07) benign(0.013) TCGA-DA-A1I0-06 15 67004014 67004014 C T SMAD6 Missense_Mutation p.P276S 0.23 deleterious(0) possibly_damaging(0.786) TCGA-DA-A1I0-06 15 68628086 68628086 G A ITGA11 Silent p.T458T 0.28 TCGA-DA-A1I0-06 15 72511404 72511404 A T PKM Missense_Mutation p.F12Y 0.23 tolerated(0.07) benign(0.001) TCGA-DA-A1I0-06 15 75985519 75985519 G A CSPG4 Silent p.D48D 0.36 TCGA-DA-A1I0-06 15 81650576 81650576 G A TMC3 Silent p.I219I 0.27 TCGA-DA-A1I0-06 15 86087057 86087057 G A AKAP13 Missense_Mutation p.R178K 0.27 tolerated(0.06) possibly_damaging(0.513) TCGA-DA-A1I0-06 15 99500556 99500556 G A IGF1R Missense_Mutation p.G1330D 0.27 deleterious(0) benign(0.028) TCGA-DA-A1I0-06 16 114705 114705 G A RHBDF1 Silent p.T80T 0.26 TCGA-DA-A1I0-06 16 14989830 14989830 C T NOMO1 3'UTR 0.11 TCGA-DA-A1I0-06 16 16259745 16259745 G A ABCC6 Missense_Mutation p.A1014V 0.24 tolerated(0.75) benign(0) TCGA-DA-A1I0-06 16 20352420 20352420 G A UMOD Nonsense_Mutation p.Q524* 0.19 TCGA-DA-A1I0-06 16 21968752 21968752 A G UQCRC2 Silent p.P44P 0.33 TCGA-DA-A1I0-06 16 23080775 23080775 G A USP31 Missense_Mutation p.S884L 0.16 deleterious_low_confidence(0) benign(0.341) TCGA-DA-A1I0-06 16 2569794 2569794 C T RP11-20I23.1 3'UTR 0.29 TCGA-DA-A1I0-06 16 26147192 26147192 C T HS3ST4 Nonsense_Mutation p.R332* 0.27 TCGA-DA-A1I0-06 16 2987358 2987358 C T FLYWCH1 Missense_Mutation p.P583S 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-DA-A1I0-06 16 3063852 3063852 C T CLDN9 Silent p.S163S 0.21 TCGA-DA-A1I0-06 16 31008892 31008892 G A STX1B Silent p.I95I 0.16 TCGA-DA-A1I0-06 16 31090166 31090166 C T ZNF646 Missense_Mutation p.P841S 0.20 tolerated(0.21) probably_damaging(0.996) TCGA-DA-A1I0-06 16 31091383 31091383 G A ZNF646 Silent p.K1246K 0.25 TCGA-DA-A1I0-06 16 31421815 31421815 G A ITGAD Missense_Mutation p.E395K 0.17 tolerated(0.4) benign(0.03) TCGA-DA-A1I0-06 16 3350674 3350674 G A TIGD7 5'UTR 0.29 TCGA-DA-A1I0-06 16 68010648 68010648 C T DPEP3 Missense_Mutation p.G375E 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I0-06 16 739604 739604 C T WDR24 Missense_Mutation p.G13S 0.24 tolerated_low_confidence(0.3) benign(0.003) TCGA-DA-A1I0-06 16 77353924 77353924 G A ADAMTS18 Missense_Mutation p.S785F 0.24 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I0-06 16 83520203 83520203 C T CDH13 Silent p.I348I 0.29 TCGA-DA-A1I0-06 16 87367779 87367779 G A FBXO31 Silent p.V370V 0.28 TCGA-DA-A1I0-06 17 10357053 10357053 C T MYH4 Silent p.L947L 0.21 TCGA-DA-A1I0-06 17 10450905 10450905 G A MYH2 Missense_Mutation p.P79S 0.20 tolerated(0.26) benign(0.001) TCGA-DA-A1I0-06 17 11622662 11622662 C T DNAH9 Missense_Mutation p.T1855I 0.16 probably_damaging(0.986) TCGA-DA-A1I0-06 17 18022497 18022497 G A MYO15A Missense_Mutation p.S128N 0.18 probably_damaging(0.942) TCGA-DA-A1I0-06 17 18045505 18045505 G A MYO15A Missense_Mutation p.R1921Q 0.26 unknown(0) TCGA-DA-A1I0-06 17 21731231 21731231 T G UBBP4 Intron 0.21 TCGA-DA-A1I0-06 17 27066202 27066202 G A NEK8 Nonsense_Mutation p.W467* 0.26 TCGA-DA-A1I0-06 17 27185480 27185480 C T ERAL1 Silent p.I229I 0.23 TCGA-DA-A1I0-06 17 29679304 29679304 C T NF1 Missense_Mutation p.S2496F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-DA-A1I0-06 17 3181360 3181360 G A OR3A2 Silent p.I290I 0.26 TCGA-DA-A1I0-06 17 32598281 32598281 A C CCL7 Missense_Mutation p.I65L 0.24 tolerated(0.06) possibly_damaging(0.734) TCGA-DA-A1I0-06 17 32614717 32614717 C T CCL11 3'UTR 0.32 TCGA-DA-A1I0-06 17 37881310 37881310 C T ERBB2 Silent p.S834S 0.27 TCGA-DA-A1I0-06 17 40282417 40282417 G A RAB5C Missense_Mutation p.S68F 0.38 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I0-06 17 40837320 40837320 C T CNTNAP1 Silent p.F199F 0.21 TCGA-DA-A1I0-06 17 42850448 42850448 G A ADAM11 Missense_Mutation p.D274N 0.33 deleterious(0) possibly_damaging(0.908) TCGA-DA-A1I0-06 17 48267689 48267689 G A COL1A1 Missense_Mutation p.P817L 0.21 unknown(0) TCGA-DA-A1I0-06 17 48271786 48271786 G A COL1A1 Missense_Mutation p.S513F 0.30 unknown(0) TCGA-DA-A1I0-06 17 4836376 4836376 C T GP1BA Silent p.L159L 0.18 TCGA-DA-A1I0-06 17 48696258 48696258 C T CACNA1G Silent p.F1890F 0.27 TCGA-DA-A1I0-06 17 56382452 56382452 C T BZRAP1 Silent p.R1838R 0.33 TCGA-DA-A1I0-06 17 56676437 56676437 C T TEX14 Missense_Mutation p.E763K 0.32 tolerated(1) benign(0.002) TCGA-DA-A1I0-06 17 56700250 56700250 C T TEX14 Silent p.P125P 0.20 TCGA-DA-A1I0-06 17 59760670 59760670 G A BRIP1 Missense_Mutation p.P1246L 0.24 tolerated_low_confidence(0.06) benign(0.034) TCGA-DA-A1I0-06 17 67012497 67012497 C T ABCA9 Missense_Mutation p.R979Q 0.21 deleterious(0.04) possibly_damaging(0.75) TCGA-DA-A1I0-06 17 7189832 7189832 C T SLC2A4 Nonsense_Mutation p.R472* 0.27 TCGA-DA-A1I0-06 17 72469977 72469977 G A CD300A Missense_Mutation p.D115N 0.16 deleterious(0) probably_damaging(0.975) TCGA-DA-A1I0-06 17 7484807 7484807 C T CD68 Missense_Mutation p.P348L 0.31 tolerated(0.05) possibly_damaging(0.826) TCGA-DA-A1I0-06 17 76187085 76187085 T C AFMID Missense_Mutation p.V33A 0.24 tolerated(0.41) benign(0.034) TCGA-DA-A1I0-06 17 77711004 77711004 C T ENPP7 Silent p.I397I 0.21 TCGA-DA-A1I0-06 17 79205475 79205475 G A ENTHD2 Silent p.L240L 0.26 TCGA-DA-A1I0-06 17 80022717 80022717 G A DUS1L Silent p.D73D 0.37 TCGA-DA-A1I0-06 17 8049417 8049417 G A PER1 Missense_Mutation p.P693S 0.33 tolerated(0.13) benign(0.018) TCGA-DA-A1I0-06 17 8216542 8216542 G A ARHGEF15 Missense_Mutation p.D302N 0.29 tolerated(0.1) benign(0.055) TCGA-DA-A1I0-06 18 19996520 19996520 G A CTAGE1 Nonsense_Mutation p.Q419* 0.21 TCGA-DA-A1I0-06 18 19997575 19997575 C T CTAGE1 Missense_Mutation p.S67N 0.26 deleterious(0.01) possibly_damaging(0.856) TCGA-DA-A1I0-06 18 21141429 21141429 G T NPC1 Missense_Mutation p.L176M 0.23 tolerated(0.58) possibly_damaging(0.47) TCGA-DA-A1I0-06 18 21141430 21141430 G A NPC1 Silent p.L175L 0.23 TCGA-DA-A1I0-06 18 21526249 21526249 G A LAMA3 Splice_Site p.X3117_splice 0.12 TCGA-DA-A1I0-06 18 21740034 21740034 G A CABYR Splice_Site p.X380_splice 0.29 TCGA-DA-A1I0-06 18 29038468 29038468 G A DSG3 Missense_Mutation p.D93N 0.20 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I0-06 18 30969550 30969550 C A CCDC178 Missense_Mutation p.K54N 0.26 tolerated(0.06) benign(0.339) TCGA-DA-A1I0-06 18 50589813 50589813 A T DCC Missense_Mutation p.D375V 0.24 deleterious(0) probably_damaging(0.991) TCGA-DA-A1I0-06 18 50831994 50831994 G A DCC Missense_Mutation p.G653E 0.14 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 18 55274789 55274789 G A NARS Missense_Mutation p.L230F 0.26 deleterious(0.04) possibly_damaging(0.739) TCGA-DA-A1I0-06 18 59949585 59949585 C T KIAA1468 Missense_Mutation p.P1054L 0.30 deleterious(0) possibly_damaging(0.809) TCGA-DA-A1I0-06 18 61328075 61328075 G A SERPINB3 Nonsense_Mutation p.Q61* 0.28 TCGA-DA-A1I0-06 18 61379833 61379833 G A SERPINB11 Missense_Mutation p.G88D 0.10 deleterious(0.03) benign(0.008) TCGA-DA-A1I0-06 18 8718506 8718506 C T SOGA2 Missense_Mutation p.R20W 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 19 10800230 10800230 G A ILF3 3'UTR 0.32 TCGA-DA-A1I0-06 19 12692441 12692441 G A ZNF490 Missense_Mutation p.P150S 0.38 tolerated(0.63) benign(0.017) TCGA-DA-A1I0-06 19 12757510 12757510 G A MAN2B1 Missense_Mutation p.P987L 0.45 deleterious(0.05) benign(0.036) TCGA-DA-A1I0-06 19 18288552 18288552 C T IFI30 Missense_Mutation p.T223I 0.28 tolerated(0.18) benign(0.003) TCGA-DA-A1I0-06 19 19448065 19448065 C A MAU2 Missense_Mutation p.F149L 0.27 tolerated(0.3) possibly_damaging(0.889) TCGA-DA-A1I0-06 19 32954832 32954832 C T DPY19L3 Silent p.S501S 0.18 TCGA-DA-A1I0-06 19 37643311 37643311 G A ZNF585A Missense_Mutation p.S442F 0.17 deleterious(0.01) possibly_damaging(0.629) TCGA-DA-A1I0-06 19 37647190 37647190 G A CTC-454I21.3 Missense_Mutation p.S35F 0.21 deleterious(0.01) possibly_damaging(0.698) TCGA-DA-A1I0-06 19 38230520 38230520 C T ZNF573 Missense_Mutation p.E291K 0.13 tolerated(0.89) possibly_damaging(0.705) TCGA-DA-A1I0-06 19 38995526 38995526 G A RYR1 Missense_Mutation p.D2736N 0.20 benign(0.138) TCGA-DA-A1I0-06 19 40419971 40419971 C T FCGBP Missense_Mutation p.G1008E 0.32 possibly_damaging(0.557) TCGA-DA-A1I0-06 19 40433426 40433426 C T FCGBP Silent p.G281G 0.07 TCGA-DA-A1I0-06 19 41220505 41220505 C T ADCK4 Silent p.G11G 0.21 TCGA-DA-A1I0-06 19 42301774 42301774 C T CEACAM3 Silent p.S106S 0.30 TCGA-DA-A1I0-06 19 42713916 42713916 G A DEDD2 Silent p.A175A 0.23 TCGA-DA-A1I0-06 19 43762223 43762223 G A PSG9 Intron 0.24 TCGA-DA-A1I0-06 19 45206660 45206660 G A CEACAM16 Missense_Mutation p.E27K 0.22 tolerated(0.15) possibly_damaging(0.543) TCGA-DA-A1I0-06 19 46997130 46997130 C T PNMAL2 Silent p.R531R 0.31 TCGA-DA-A1I0-06 19 50435931 50435931 C T ATF5 Missense_Mutation p.S144F 0.15 tolerated(0.72) benign(0.001) TCGA-DA-A1I0-06 19 50779322 50779322 C T MYH14 Missense_Mutation p.A1181V 0.25 tolerated(0.16) benign(0.007) TCGA-DA-A1I0-06 19 52131205 52131205 G A SIGLEC5 Silent p.I293I 0.22 TCGA-DA-A1I0-06 19 52660119 52660119 G A ZNF836 Missense_Mutation p.P273S 0.13 deleterious(0.04) possibly_damaging(0.907) TCGA-DA-A1I0-06 19 53058286 53058286 C T ZNF808 Missense_Mutation p.P706L 0.14 deleterious(0.03) possibly_damaging(0.9) TCGA-DA-A1I0-06 19 54080033 54080033 T A ZNF331 Missense_Mutation p.D73E 0.32 tolerated(1) benign(0.017) TCGA-DA-A1I0-06 19 56369880 56369880 C T NLRP4 Missense_Mutation p.S374F 0.37 deleterious(0) benign(0.036) TCGA-DA-A1I0-06 19 56467063 56467063 G A NLRP8 Missense_Mutation p.G547R 0.42 tolerated(0.46) benign(0.001) TCGA-DA-A1I0-06 19 59059887 59059887 A C TRIM28 Silent p.S417S 0.12 TCGA-DA-A1I0-06 19 8807852 8807852 C T ACTL9 Silent p.R400R 0.28 TCGA-DA-A1I0-06 19 9020132 9020132 C T MUC16 Missense_Mutation p.G12455R 0.27 possibly_damaging(0.763) TCGA-DA-A1I0-06 19 9062771 9062771 C T MUC16 Nonsense_Mutation p.W8225* 0.37 TCGA-DA-A1I0-06 19 9949114 9949114 C T PIN1 Nonsense_Mutation p.R21* 0.36 TCGA-DA-A1I0-06 1 10205044 10205044 C T UBE4B Missense_Mutation p.P804S 0.09 deleterious(0) benign(0.425) TCGA-DA-A1I0-06 1 107691158 107691158 C T NTNG1 5'UTR 0.37 TCGA-DA-A1I0-06 1 109870131 109870131 G A SORT1 Silent p.V488V 0.17 TCGA-DA-A1I0-06 1 115263252 115263252 A C CSDE1 Missense_Mutation p.F700V 0.24 deleterious(0) benign(0.323) TCGA-DA-A1I0-06 1 119427506 119427506 C T TBX15 Missense_Mutation p.G447E 0.22 tolerated_low_confidence(0.1) possibly_damaging(0.617) TCGA-DA-A1I0-06 1 119467391 119467391 G A TBX15 Missense_Mutation p.P85S 0.15 tolerated(0.48) benign(0.127) TCGA-DA-A1I0-06 1 12885121 12885121 G A PRAMEF11 Silent p.I330I 0.10 TCGA-DA-A1I0-06 1 12887160 12887160 G A PRAMEF11 Missense_Mutation p.L233F 0.12 deleterious(0.05) benign(0.176) TCGA-DA-A1I0-06 1 12954431 12954431 C T PRAMEF10 Silent p.L284L 0.27 TCGA-DA-A1I0-06 1 13497656 13497656 G A PRAMEF16 Missense_Mutation p.S318N 0.17 tolerated(0.65) probably_damaging(0.935) TCGA-DA-A1I0-06 1 13718490 13718490 G A PRAMEF17 Missense_Mutation p.S318N 0.20 tolerated(0.65) probably_damaging(0.984) TCGA-DA-A1I0-06 1 152059391 152059391 C T TCHHL1 Missense_Mutation p.G256E 0.43 tolerated(0.66) benign(0.048) TCGA-DA-A1I0-06 1 152748928 152748928 G A LCE1F Silent p.P27P 0.35 TCGA-DA-A1I0-06 1 153409566 153409566 C T S100A7L2 Missense_Mutation p.G103R 0.40 deleterious(0.04) probably_damaging(0.991) TCGA-DA-A1I0-06 1 157738306 157738306 C T FCRL2 Missense_Mutation p.E261K 0.14 tolerated(0.17) possibly_damaging(0.85) TCGA-DA-A1I0-06 1 158323823 158323823 G A CD1E Silent p.G15G 0.38 TCGA-DA-A1I0-06 1 159035960 159035960 C T AIM2 Missense_Mutation p.E186K 0.41 tolerated(0.23) possibly_damaging(0.596) TCGA-DA-A1I0-06 1 159505253 159505253 G A OR10J5 Missense_Mutation p.P182L 0.17 deleterious(0.01) possibly_damaging(0.521) TCGA-DA-A1I0-06 1 159784034 159784034 G A FCRL6 Missense_Mutation p.E367K 0.47 deleterious(0.05) benign(0.01) TCGA-DA-A1I0-06 1 160851957 160851957 G A ITLN1 Silent p.I65I 0.17 TCGA-DA-A1I0-06 1 161495088 161495088 A T HSPA6 Missense_Mutation p.I214F 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DA-A1I0-06 1 162343956 162343956 C T C1orf111 Nonsense_Mutation p.W223* 0.25 TCGA-DA-A1I0-06 1 16260357 16260357 C T SPEN Missense_Mutation p.P2541L 0.16 probably_damaging(0.999) TCGA-DA-A1I0-06 1 167815256 167815256 G A ADCY10 Missense_Mutation p.R895C 0.14 tolerated(0.08) benign(0.188) TCGA-DA-A1I0-06 1 168344860 168344860 G A MIR557 3'Flank 0.19 TCGA-DA-A1I0-06 1 171086285 171086285 G A FMO3 Missense_Mutation p.M434I 0.38 tolerated(0.1) possibly_damaging(0.521) TCGA-DA-A1I0-06 1 178426954 178426954 C T RASAL2 Missense_Mutation p.P843S 0.45 tolerated(0.65) probably_damaging(0.999) TCGA-DA-A1I0-06 1 179620128 179620128 G A TDRD5 Missense_Mutation p.E643K 0.44 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I0-06 1 182025717 182025717 G A ZNF648 Missense_Mutation p.P477S 0.54 tolerated(0.22) benign(0.122) TCGA-DA-A1I0-06 1 183100434 183100434 T - LAMC1 Frame_Shift_Del p.S1163Qfs*14 0.10 TCGA-DA-A1I0-06 1 18809604 18809604 C G KLHDC7A Missense_Mutation p.T710R 0.30 tolerated(0.18) benign(0.358) TCGA-DA-A1I0-06 1 196695755 196695755 G A CFH Missense_Mutation p.E677K 0.13 tolerated(0.62) benign(0.004) TCGA-DA-A1I0-06 1 203025528 203025528 G A PPFIA4 Missense_Mutation p.R205Q 0.47 tolerated(0.1) benign(0.016) TCGA-DA-A1I0-06 1 204949556 204949556 G A NFASC Silent p.E745E 0.12 TCGA-DA-A1I0-06 1 212969872 212969872 C T TATDN3 Missense_Mutation p.A38V 0.54 deleterious(0.01) benign(0.407) TCGA-DA-A1I0-06 1 216373131 216373131 C T USH2A Missense_Mutation p.D1217N 0.46 benign(0) TCGA-DA-A1I0-06 1 216420526 216420526 C T USH2A Missense_Mutation p.R737Q 0.46 benign(0.009) TCGA-DA-A1I0-06 1 222920367 222920367 C T FAM177B Missense_Mutation p.S62F 0.52 deleterious(0) probably_damaging(0.935) TCGA-DA-A1I0-06 1 22838270 22838270 G A ZBTB40 Missense_Mutation p.D702N 0.12 tolerated(0.22) unknown(0) TCGA-DA-A1I0-06 1 233518133 233518133 G A MLK4 Silent p.R929R 0.28 TCGA-DA-A1I0-06 1 236157146 236157146 C T NID1 Missense_Mutation p.E852K 0.23 tolerated(0.26) benign(0.212) TCGA-DA-A1I0-06 1 237632406 237632406 G A RYR2 Missense_Mutation p.G543R 0.13 benign(0.134) TCGA-DA-A1I0-06 1 240341279 240341279 C T FMN2 Missense_Mutation p.S614L 0.13 unknown(0) TCGA-DA-A1I0-06 1 240656377 240656377 C T GREM2 Silent p.V133V 0.09 TCGA-DA-A1I0-06 1 242159463 242159463 G A MAP1LC3C 3'UTR 0.10 TCGA-DA-A1I0-06 1 247264612 247264612 G A ZNF669 Silent p.I153I 0.43 TCGA-DA-A1I0-06 1 247655316 247655316 G A OR2W5 RNA 0.11 TCGA-DA-A1I0-06 1 248224678 248224678 G A OR2L3 Missense_Mutation p.G232E 0.47 deleterious(0) possibly_damaging(0.539) TCGA-DA-A1I0-06 1 248524980 248524980 C T OR2T4 Missense_Mutation p.T33I 0.34 deleterious(0.02) benign(0.022) TCGA-DA-A1I0-06 1 32085235 32085235 C T HCRTR1 Missense_Mutation p.P101L 0.30 deleterious(0) probably_damaging(0.988) TCGA-DA-A1I0-06 1 32122013 32122013 A G COL16A1 Silent p.P1363P 0.24 TCGA-DA-A1I0-06 1 3328233 3328233 C T PRDM16 Missense_Mutation p.S491F 0.25 deleterious(0.02) possibly_damaging(0.841) TCGA-DA-A1I0-06 1 34191055 34191055 C T CSMD2 Missense_Mutation p.G824R 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 1 34329723 34329723 C T HMGB4 5'UTR 0.27 TCGA-DA-A1I0-06 1 39781189 39781189 C T MACF1 Missense_Mutation p.T1097I 0.22 benign(0.028) TCGA-DA-A1I0-06 1 40704981 40704981 C T RLF Missense_Mutation p.A1536V 0.25 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I0-06 1 41012517 41012517 C T ZNF684 Silent p.F174F 0.22 TCGA-DA-A1I0-06 1 45984720 45984720 C T PRDX1 5'UTR 0.12 TCGA-DA-A1I0-06 1 47606478 47606478 G A CYP4A22 Silent p.R74R 0.23 TCGA-DA-A1I0-06 1 55474256 55474256 C T BSND Silent p.L306L 0.15 TCGA-DA-A1I0-06 1 57373700 57373700 G A C8A Missense_Mutation p.G432S 0.29 tolerated(0.35) benign(0.29) TCGA-DA-A1I0-06 1 60359334 60359334 G A CYP2J2 Missense_Mutation p.P500S 0.19 deleterious(0.01) possibly_damaging(0.664) TCGA-DA-A1I0-06 1 6215778 6215778 C T CHD5 Splice_Site p.X130_splice 0.28 TCGA-DA-A1I0-06 1 62349956 62349956 C T INADL Missense_Mutation p.P1003S 0.24 deleterious(0.01) benign(0.115) TCGA-DA-A1I0-06 1 66083654 66083654 C T LEPR Silent p.I740I 0.19 TCGA-DA-A1I0-06 1 6695709 6695709 C T DNAJC11 3'UTR 0.21 TCGA-DA-A1I0-06 1 70291501 70291501 C T LRRC7 Silent p.P126P 0.16 TCGA-DA-A1I0-06 1 71477851 71477851 G A PTGER3 Intron 0.29 TCGA-DA-A1I0-06 1 75065508 75065508 C T C1orf173 Missense_Mutation p.D533N 0.13 deleterious(0.02) probably_damaging(0.973) TCGA-DA-A1I0-06 1 7723933 7723933 C T CAMTA1 Silent p.F442F 0.25 TCGA-DA-A1I0-06 1 77334210 77334210 T C ST6GALNAC5 Missense_Mutation p.L15P 0.17 possibly_damaging(0.83) TCGA-DA-A1I0-06 1 78383316 78383316 A G NEXN Silent p.V31V 0.19 TCGA-DA-A1I0-06 1 93691891 93691891 T C CCDC18 Missense_Mutation p.V779A 0.22 deleterious(0) possibly_damaging(0.61) TCGA-DA-A1I0-06 20 13830917 13830917 G A SEL1L2 Missense_Mutation p.P510S 0.24 deleterious_low_confidence(0) benign(0.178) TCGA-DA-A1I0-06 20 25206247 25206247 C T ENTPD6 3'UTR 0.31 TCGA-DA-A1I0-06 20 2582803 2582803 C T TMC2 Silent p.I423I 0.19 TCGA-DA-A1I0-06 20 37630380 37630380 G A DHX35 Missense_Mutation p.R217Q 0.18 tolerated(0.38) benign(0.005) TCGA-DA-A1I0-06 20 44669284 44669284 C T SLC12A5 Intron 0.38 TCGA-DA-A1I0-06 20 45242260 45242260 G A SLC13A3 Silent p.F72F 0.56 TCGA-DA-A1I0-06 20 47621705 47621705 C T ARFGEF2 Silent p.F1177F 0.20 TCGA-DA-A1I0-06 20 5283169 5283169 G A PROKR2 Silent p.F224F 0.46 TCGA-DA-A1I0-06 20 56136647 56136647 G A PCK1 Missense_Mutation p.M60I 0.15 deleterious(0) benign(0.202) TCGA-DA-A1I0-06 20 61528235 61528235 G A DIDO1 Missense_Mutation p.P568S 0.37 benign(0.288) TCGA-DA-A1I0-06 20 61834637 61834637 T A YTHDF1 Missense_Mutation p.N219Y 0.10 deleterious(0.01) benign(0.372) TCGA-DA-A1I0-06 20 62298828 62298828 C T RTEL1 Silent p.C231C 0.15 TCGA-DA-A1I0-06 20 8717804 8717804 C T PLCB1 Missense_Mutation p.P725S 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 21 10862794 10862794 G A IGHV1OR21-1 Silent p.V30V 0.16 TCGA-DA-A1I0-06 21 10998216 10998216 A G TPTE RNA 0.11 TCGA-DA-A1I0-06 21 11038973 11038973 G A BAGE2 RNA 0.03 TCGA-DA-A1I0-06 21 15517001 15517001 G A LIPI Missense_Mutation p.S434F 0.19 tolerated(0.1) benign(0.009) TCGA-DA-A1I0-06 21 16339140 16339140 A T NRIP1 Silent p.V458V 0.17 TCGA-DA-A1I0-06 21 30521536 30521536 C T MAP3K7CL Missense_Mutation p.P133S 0.29 tolerated(0.07) benign(0.301) TCGA-DA-A1I0-06 21 43693447 43693447 G A ABCG1 Missense_Mutation p.G147S 0.29 tolerated(0.08) probably_damaging(0.954) TCGA-DA-A1I0-06 21 43792820 43792820 G A TMPRSS3 3'UTR 0.06 TCGA-DA-A1I0-06 21 45107925 45107925 G A RRP1B Missense_Mutation p.G557E 0.38 tolerated(0.26) benign(0.005) TCGA-DA-A1I0-06 21 45666334 45666334 G A DNMT3L Silent p.L370L 0.14 TCGA-DA-A1I0-06 21 45802612 45802612 C T TRPM2 Silent p.I409I 0.34 TCGA-DA-A1I0-06 22 23223415 23223415 C T IGLV3-1 Missense_Mutation p.P62L 0.48 deleterious(0.01) possibly_damaging(0.879) TCGA-DA-A1I0-06 22 24122860 24122860 C T MMP11 Missense_Mutation p.H192Y 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 22 29628311 29628311 C T EMID1 Missense_Mutation p.P248L 0.69 tolerated(0.29) benign(0.159) TCGA-DA-A1I0-06 22 36651026 36651026 G A APOL1 Missense_Mutation p.V25I 0.43 tolerated_low_confidence(0.07) benign(0.049) TCGA-DA-A1I0-06 22 37273673 37273673 G A NCF4 3'UTR 0.16 TCGA-DA-A1I0-06 22 37602529 37602529 C T SSTR3 3'UTR 0.36 TCGA-DA-A1I0-06 22 39713525 39713525 G A RPL3 Silent p.F102F 0.30 TCGA-DA-A1I0-06 22 39746024 39746024 G A SYNGR1 Silent p.G3G 0.30 TCGA-DA-A1I0-06 22 45683229 45683229 C T UPK3A Silent p.L129L 0.17 TCGA-DA-A1I0-06 22 46795748 46795748 C A CELSR1 Nonsense_Mutation p.E1760* 0.34 TCGA-DA-A1I0-06 22 47068739 47068739 G A GRAMD4 Splice_Site p.X362_splice 0.11 TCGA-DA-A1I0-06 22 50471708 50471708 G A TTLL8 Silent p.N418N 0.19 TCGA-DA-A1I0-06 22 50988169 50988169 C T KLHDC7B Missense_Mutation p.P525L 0.20 tolerated(0.14) benign(0.041) TCGA-DA-A1I0-06 22 50988170 50988170 C T KLHDC7B Silent p.P525P 0.17 TCGA-DA-A1I0-06 22 51019885 51019885 G A CHKB Missense_Mutation p.T182I 0.27 deleterious(0.01) benign(0.254) TCGA-DA-A1I0-06 2 102459092 102459092 G T MAP4K4 Missense_Mutation p.S324I 0.19 deleterious_low_confidence(0) benign(0.184) TCGA-DA-A1I0-06 2 103300663 103300663 C T SLC9A2 Silent p.I431I 0.22 TCGA-DA-A1I0-06 2 107039538 107039538 C T RGPD3 Missense_Mutation p.E1629K 0.06 deleterious_low_confidence(0.02) benign(0.045) TCGA-DA-A1I0-06 2 113788670 113788670 C T IL36B Missense_Mutation p.G26R 0.20 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-DA-A1I0-06 2 116066815 116066815 G A DPP10 Missense_Mutation p.E25K 0.20 deleterious(0.03) possibly_damaging(0.615) TCGA-DA-A1I0-06 2 128346007 128346007 C T MYO7B Silent p.I577I 0.19 TCGA-DA-A1I0-06 2 128467387 128467387 G A WDR33 Missense_Mutation p.P1118S 0.24 tolerated_low_confidence(0.08) benign(0.016) TCGA-DA-A1I0-06 2 130785942 130785942 C T FAR2P1 RNA 0.25 TCGA-DA-A1I0-06 2 131487207 131487207 C T GPR148 Silent p.S161S 0.21 TCGA-DA-A1I0-06 2 132054501 132054501 G A CYP4F31P 3'Flank 0.21 TCGA-DA-A1I0-06 2 132288220 132288220 G A CCDC74A Missense_Mutation p.G122R 0.09 tolerated(0.54) benign(0.33) TCGA-DA-A1I0-06 2 136437805 136437805 C T R3HDM1 Silent p.F755F 0.18 TCGA-DA-A1I0-06 2 136570190 136570190 C T LCT Missense_Mutation p.G682S 0.26 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I0-06 2 136570208 136570208 C T LCT Missense_Mutation p.G676S 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 2 141092073 141092073 C T LRP1B Missense_Mutation p.D4058N 0.25 possibly_damaging(0.822) TCGA-DA-A1I0-06 2 141816566 141816566 C T LRP1B Missense_Mutation p.D432N 0.16 possibly_damaging(0.539) TCGA-DA-A1I0-06 2 144710343 144710343 G A GTDC1 Missense_Mutation p.P400S 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1I0-06 2 149248083 149248083 G A MBD5 Missense_Mutation p.G1395R 0.30 deleterious(0) unknown(0) TCGA-DA-A1I0-06 2 152325177 152325177 C T RIF1 Missense_Mutation p.S2283F 0.21 deleterious(0.01) possibly_damaging(0.713) TCGA-DA-A1I0-06 2 153468117 153468117 G A FMNL2 Missense_Mutation p.D354N 0.27 possibly_damaging(0.503) TCGA-DA-A1I0-06 2 158272197 158272197 G A CYTIP Missense_Mutation p.R358C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I0-06 2 160729052 160729052 C T LY75-CD302 Missense_Mutation p.R676Q 0.29 deleterious(0.05) probably_damaging(0.947) TCGA-DA-A1I0-06 2 166003503 166003503 T G SCN3A Missense_Mutation p.S473R 0.23 tolerated(0.12) probably_damaging(0.975) TCGA-DA-A1I0-06 2 167149869 167149869 C T SCN9A Missense_Mutation p.G327R 0.41 deleterious(0.03) probably_damaging(0.991) TCGA-DA-A1I0-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.30 benign(0.002) TCGA-DA-A1I0-06 2 168105435 168105435 G A XIRP2 Silent p.R2511R 0.17 TCGA-DA-A1I0-06 2 168115072 168115072 G A XIRP2 3'UTR 0.23 TCGA-DA-A1I0-06 2 170003352 170003352 G A LRP2 Silent p.I4236I 0.28 TCGA-DA-A1I0-06 2 172187129 172187129 G A METTL8 Missense_Mutation p.P267L 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 2 176983683 176983683 G A HOXD10 Silent p.E249E 0.28 TCGA-DA-A1I0-06 2 179567178 179567178 C T TTN Intron 0.27 TCGA-DA-A1I0-06 2 179643972 179643972 C T TTN Missense_Mutation p.G1316E 0.30 TCGA-DA-A1I0-06 2 185803769 185803769 G A ZNF804A 3'UTR 0.28 TCGA-DA-A1I0-06 2 187693413 187693413 C T ZSWIM2 Silent p.V400V 0.22 TCGA-DA-A1I0-06 2 202272229 202272229 G A TRAK2 Silent p.L61L 0.19 TCGA-DA-A1I0-06 2 206364752 206364752 C T PARD3B Silent p.L997L 0.26 TCGA-DA-A1I0-06 2 207169892 207169892 G A ZDBF2 Missense_Mutation p.D214N 0.26 deleterious(0.01) possibly_damaging(0.539) TCGA-DA-A1I0-06 2 209302320 209302320 G A PTH2R Silent p.G79G 0.24 TCGA-DA-A1I0-06 2 212537891 212537891 G A ERBB4 Missense_Mutation p.P572S 0.23 tolerated(0.33) benign(0.039) TCGA-DA-A1I0-06 2 220502394 220502394 C T SLC4A3 Missense_Mutation p.A903V 0.29 tolerated(0.6) benign(0.004) TCGA-DA-A1I0-06 2 227946902 227946902 C T COL4A4 Missense_Mutation p.G542E 0.34 probably_damaging(0.993) TCGA-DA-A1I0-06 2 228882461 228882461 G A SPHKAP Missense_Mutation p.L1037F 0.26 deleterious(0.04) benign(0.275) TCGA-DA-A1I0-06 2 231109743 231109743 G A SP140 Silent p.K204K 0.35 TCGA-DA-A1I0-06 2 231380004 231380004 C T SP100 Intron 0.39 TCGA-DA-A1I0-06 2 239037370 239037370 G A ESPNL Missense_Mutation p.G413E 0.62 tolerated(0.31) benign(0.003) TCGA-DA-A1I0-06 2 27803477 27803477 A G C2orf16 Silent p.Q1346Q 0.23 TCGA-DA-A1I0-06 2 31621549 31621549 C T XDH Missense_Mutation p.S108N 0.24 deleterious(0.01) benign(0.098) TCGA-DA-A1I0-06 2 31754444 31754444 G A AL133247.2 Intron 0.22 TCGA-DA-A1I0-06 2 43797554 43797554 G A THADA Silent p.H720H 0.20 TCGA-DA-A1I0-06 2 48956337 48956337 C T LHCGR Missense_Mutation p.R88K 0.28 tolerated(0.48) benign(0.008) TCGA-DA-A1I0-06 2 54080990 54080990 G A GPR75 Nonsense_Mutation p.R302* 0.21 TCGA-DA-A1I0-06 2 54080991 54080991 G A GPR75 Silent p.S301S 0.22 TCGA-DA-A1I0-06 2 68520994 68520994 T A CNRIP1 Nonstop_Mutation p.*165Cext*42 0.19 TCGA-DA-A1I0-06 2 68520995 68520995 C T CNRIP1 Silent p.%3D 0.20 TCGA-DA-A1I0-06 2 68613777 68613777 G A PLEK Missense_Mutation p.E206K 0.23 tolerated(0.63) benign(0.219) TCGA-DA-A1I0-06 2 70187962 70187962 C T ASPRV1 Missense_Mutation p.D287N 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 2 74128495 74128495 G A ACTG2 Silent p.K19K 0.21 TCGA-DA-A1I0-06 2 88408040 88408040 C T SMYD1 Silent p.P432P 0.18 TCGA-DA-A1I0-06 2 8871781 8871781 G A KIDINS220 Missense_Mutation p.S1462L 0.24 deleterious_low_confidence(0) benign(0.15) TCGA-DA-A1I0-06 2 89384780 89384780 C T IGKV3-15 Missense_Mutation p.A80T 0.27 tolerated(0.08) benign(0.033) TCGA-DA-A1I0-06 2 97749486 97749486 G A FAHD2B 3'UTR 0.10 TCGA-DA-A1I0-06 3 111873846 111873846 C T SLC9C1 Missense_Mutation p.E1139K 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-DA-A1I0-06 3 113955925 113955925 C T ZNF80 5'UTR 0.34 TCGA-DA-A1I0-06 3 115439812 115439812 A G GAP43 3'UTR 0.36 TCGA-DA-A1I0-06 3 121208660 121208660 G A POLQ Nonsense_Mutation p.R1040* 0.19 TCGA-DA-A1I0-06 3 121413940 121413940 C T GOLGB1 Missense_Mutation p.M1810I 0.27 benign(0.001) TCGA-DA-A1I0-06 3 123010056 123010056 G A ADCY5 Silent p.I1077I 0.21 TCGA-DA-A1I0-06 3 129284279 129284279 G A PLXND1 Silent p.A1475A 0.24 TCGA-DA-A1I0-06 3 129284280 129284280 G A PLXND1 Missense_Mutation p.A1475V 0.24 tolerated(0.77) probably_damaging(0.999) TCGA-DA-A1I0-06 3 129546986 129546986 G A TMCC1 Missense_Mutation p.P79L 0.29 deleterious_low_confidence(0.05) benign(0.014) TCGA-DA-A1I0-06 3 13401823 13401823 G T NUP210 Silent p.R701R 0.32 TCGA-DA-A1I0-06 3 14861750 14861750 G A FGD5 Missense_Mutation p.G391E 0.24 tolerated_low_confidence(0.13) benign(0.255) TCGA-DA-A1I0-06 3 158317861 158317861 T A MLF1 Missense_Mutation p.I187N 0.29 deleterious(0) probably_damaging(0.987) TCGA-DA-A1I0-06 3 186330964 186330964 C T AHSG Nonsense_Mutation p.Q12* 0.27 TCGA-DA-A1I0-06 3 186504350 186504350 G A EIF4A2 Missense_Mutation p.M229I 0.15 deleterious(0.03) benign(0.087) TCGA-DA-A1I0-06 3 196554126 196554126 C T PAK2 Silent p.S470S 0.36 TCGA-DA-A1I0-06 3 26751075 26751075 G A LRRC3B 5'UTR 0.22 TCGA-DA-A1I0-06 3 367654 367654 C T CHL1 Missense_Mutation p.P35L 0.18 deleterious(0) possibly_damaging(0.883) TCGA-DA-A1I0-06 3 38592138 38592138 G A SCN5A Nonsense_Mutation p.Q1909* 0.18 TCGA-DA-A1I0-06 3 39225929 39225929 G A XIRP1 Missense_Mutation p.P1670S 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-DA-A1I0-06 3 42734363 42734363 G A HHATL Silent p.F465F 0.24 TCGA-DA-A1I0-06 3 44490172 44490172 C T ZNF445 Missense_Mutation p.A331T 0.27 tolerated(0.33) possibly_damaging(0.483) TCGA-DA-A1I0-06 3 46414783 46414783 C T CCR5 Silent p.V130V 0.23 TCGA-DA-A1I0-06 3 48617056 48617056 C T COL7A1 Missense_Mutation p.G1734S 0.22 unknown(0) TCGA-DA-A1I0-06 3 48680281 48680281 C A CELSR3 Nonsense_Mutation p.E2815* 0.27 TCGA-DA-A1I0-06 3 49053042 49053042 G A DALRD3 Silent p.L537L 0.32 TCGA-DA-A1I0-06 3 52263075 52263075 G A TWF2 Missense_Mutation p.P342L 0.33 deleterious(0.01) benign(0.217) TCGA-DA-A1I0-06 3 52263076 52263076 G A TWF2 Missense_Mutation p.P342S 0.32 tolerated(0.12) benign(0.146) TCGA-DA-A1I0-06 3 54913092 54913092 G A CACNA2D3 Silent p.E586E 0.17 TCGA-DA-A1I0-06 3 54952557 54952557 C T LRTM1 Missense_Mutation p.G323R 0.28 tolerated(0.3) benign(0.002) TCGA-DA-A1I0-06 3 8661633 8661644 TAGACATAAGTC - SSUH2 In_Frame_Del p.K346_Y350delinsN 0.18 TCGA-DA-A1I0-06 3 87311363 87311363 C T POU1F1 Silent p.G180G 0.17 TCGA-DA-A1I0-06 3 88040274 88040274 C T HTR1F Silent p.I125I 0.30 TCGA-DA-A1I0-06 3 8983221 8983221 G A RAD18 Silent p.I178I 0.44 TCGA-DA-A1I0-06 3 99513128 99513128 C T COL8A1 Missense_Mutation p.P128L 0.26 tolerated(0.11) unknown(0) TCGA-DA-A1I0-06 4 110635468 110635468 A G PLA2G12A 3'UTR 0.35 TCGA-DA-A1I0-06 4 11400858 11400858 G A HS3ST1 Missense_Mutation p.R258W 0.21 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I0-06 4 122681338 122681338 G A TMEM155 3'UTR 0.14 TCGA-DA-A1I0-06 4 124323559 124323559 C T SPRY1 Silent p.L271L 0.24 TCGA-DA-A1I0-06 4 138450990 138450990 G A PCDH18 Silent p.S751S 0.37 TCGA-DA-A1I0-06 4 151231397 151231397 G A LRBA Silent p.V2622V 0.20 TCGA-DA-A1I0-06 4 159789428 159789428 T C FNIP2 Missense_Mutation p.V547A 0.22 tolerated(0.09) benign(0.012) TCGA-DA-A1I0-06 4 166388935 166388935 G A CPE Silent p.V200V 0.19 TCGA-DA-A1I0-06 4 183652273 183652273 C T TENM3 Missense_Mutation p.P983L 0.08 deleterious(0) possibly_damaging(0.908) TCGA-DA-A1I0-06 4 185637552 185637552 G A CENPU Missense_Mutation p.S206L 0.23 tolerated(0.31) benign(0.005) TCGA-DA-A1I0-06 4 185678843 185678843 G A ACSL1 Silent p.I634I 0.19 TCGA-DA-A1I0-06 4 20493417 20493417 T C SLIT2 Missense_Mutation p.V270A 0.15 tolerated(1) probably_damaging(0.986) TCGA-DA-A1I0-06 4 2087471 2087471 C T POLN Missense_Mutation p.G689E 0.23 deleterious(0.02) possibly_damaging(0.873) TCGA-DA-A1I0-06 4 2275814 2275814 G A ZFYVE28 Silent p.I727I 0.23 TCGA-DA-A1I0-06 4 25675922 25675922 C T SLC34A2 Silent p.F407F 0.27 TCGA-DA-A1I0-06 4 3040189 3040189 C T GRK4 Silent p.T544T 0.23 TCGA-DA-A1I0-06 4 3769665 3769665 C T ADRA2C Silent p.F444F 0.24 TCGA-DA-A1I0-06 4 40351005 40351005 G A CHRNA9 Missense_Mutation p.D158N 0.22 deleterious(0.04) probably_damaging(0.914) TCGA-DA-A1I0-06 4 40440440 40440440 C T RBM47 Silent p.G157G 0.34 TCGA-DA-A1I0-06 4 46252598 46252598 C T GABRA2 Missense_Mutation p.M361I 0.23 tolerated(0.66) benign(0.001) TCGA-DA-A1I0-06 4 47905220 47905220 G A NFXL1 Missense_Mutation p.P213S 0.28 tolerated(0.25) benign(0.012) TCGA-DA-A1I0-06 4 672496 672496 G A MYL5 Missense_Mutation p.R18K 0.44 tolerated(0.07) benign(0.001) TCGA-DA-A1I0-06 4 69973959 69973959 G A UGT2B7 Missense_Mutation p.G410E 0.18 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I0-06 4 70361571 70361571 C T UGT2B4 Missense_Mutation p.M3I 0.23 tolerated(0.06) benign(0.027) TCGA-DA-A1I0-06 4 70464999 70464999 C T UGT2A1 Missense_Mutation p.G487R 0.14 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I0-06 4 71275098 71275098 C T PROL1 Missense_Mutation p.P18L 0.17 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-DA-A1I0-06 4 71467313 71467313 G A AMBN Missense_Mutation p.G158E 0.23 tolerated(0.54) benign(0.107) TCGA-DA-A1I0-06 4 74270018 74270018 C T ALB 5'UTR 0.26 TCGA-DA-A1I0-06 4 79321919 79321919 C T FRAS1 Missense_Mutation p.S1336L 0.24 benign(0.222) TCGA-DA-A1I0-06 4 81967008 81967008 A C BMP3 Missense_Mutation p.S145R 0.17 tolerated(0.45) benign(0.038) TCGA-DA-A1I0-06 4 82031727 82031727 C T PRKG2 Silent p.Q605Q 0.27 TCGA-DA-A1I0-06 4 88053460 88053460 C T AFF1 Missense_Mutation p.R1071C 0.20 deleterious(0.01) unknown(0) TCGA-DA-A1I0-06 4 88732673 88732673 G A IBSP Missense_Mutation p.G189S 0.14 deleterious(0.04) possibly_damaging(0.817) TCGA-DA-A1I0-06 4 9784092 9784092 C T DRD5 Missense_Mutation p.R147C 0.16 tolerated(0.15) benign(0.159) TCGA-DA-A1I0-06 5 1221332 1221332 C G SLC6A19 Silent p.R535R 0.30 TCGA-DA-A1I0-06 5 13721277 13721277 C T DNAH5 Silent p.E4037E 0.28 TCGA-DA-A1I0-06 5 13871743 13871743 G A DNAH5 Silent p.F1176F 0.31 TCGA-DA-A1I0-06 5 140201561 140201561 C T PCDHA5 Silent p.S67S 0.33 TCGA-DA-A1I0-06 5 140223289 140223289 C T PCDHA8 Missense_Mutation p.H795Y 0.31 tolerated_low_confidence(0.43) benign(0.002) TCGA-DA-A1I0-06 5 140228051 140228051 C T PCDHA9 5'UTR 0.31 TCGA-DA-A1I0-06 5 140475556 140475556 C T PCDHB2 Silent p.F394F 0.33 TCGA-DA-A1I0-06 5 140595192 140595192 C T PCDHB13 Silent p.P499P 0.38 TCGA-DA-A1I0-06 5 150660743 150660743 A G SLC36A3 Silent p.L367L 0.30 TCGA-DA-A1I0-06 5 156456847 156456847 G A HAVCR1 Missense_Mutation p.S331L 0.26 tolerated(0.09) possibly_damaging(0.765) TCGA-DA-A1I0-06 5 168233545 168233545 G A SLIT3 Missense_Mutation p.P281S 0.33 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I0-06 5 180166588 180166588 C T OR2Y1 Silent p.L157L 0.53 TCGA-DA-A1I0-06 5 180622129 180622129 C T TRIM7 3'UTR 0.56 TCGA-DA-A1I0-06 5 32601183 32601183 A G SUB1 Missense_Mutation p.K126R 0.28 tolerated(0.24) benign(0.046) TCGA-DA-A1I0-06 5 35875626 35875626 C T IL7R Silent p.I271I 0.21 TCGA-DA-A1I0-06 5 35954262 35954262 G A UGT3A1 3'UTR 0.09 TCGA-DA-A1I0-06 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.31 deleterious(0.01) probably_damaging(0.912) TCGA-DA-A1I0-06 5 78325734 78325734 C T DMGDH Missense_Mutation p.D603N 0.54 deleterious(0.01) probably_damaging(0.956) TCGA-DA-A1I0-06 5 90052378 90052378 G A GPR98 Missense_Mutation p.M3896I 0.27 benign(0.031) TCGA-DA-A1I0-06 5 95236439 95236439 T C ELL2 Silent p.E304E 0.41 TCGA-DA-A1I0-06 6 106975229 106975229 G A AIM1 Missense_Mutation p.E1080K 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 6 110113806 110113806 G A FIG4 Missense_Mutation p.E800K 0.28 tolerated(0.07) benign(0.023) TCGA-DA-A1I0-06 6 116442900 116442900 C T COL10A1 Missense_Mutation p.G127R 0.25 deleterious(0) unknown(0) TCGA-DA-A1I0-06 6 117710685 117710685 G A ROS1 Silent p.I529I 0.23 TCGA-DA-A1I0-06 6 126136462 126136462 G A NCOA7 5'UTR 0.28 TCGA-DA-A1I0-06 6 126136463 126136463 G T NCOA7 5'UTR 0.28 TCGA-DA-A1I0-06 6 128505661 128505661 C T PTPRK Missense_Mutation p.E360K 0.25 deleterious(0) probably_damaging(0.974) TCGA-DA-A1I0-06 6 134303966 134303966 C T TBPL1 Missense_Mutation p.A77V 0.12 deleterious(0.05) benign(0.35) TCGA-DA-A1I0-06 6 139094904 139094904 C T CCDC28A Silent p.F31F 0.27 TCGA-DA-A1I0-06 6 152469504 152469504 C T SYNE1 Missense_Mutation p.D8218N 0.30 benign(0.096) TCGA-DA-A1I0-06 6 160828166 160828166 G A SLC22A3 Silent p.V209V 0.26 TCGA-DA-A1I0-06 6 16328366 16328366 C T ATXN1 Missense_Mutation p.R59K 0.34 tolerated(0.22) benign(0.345) TCGA-DA-A1I0-06 6 167786710 167786710 C T TCP10 Missense_Mutation p.E310K 0.15 deleterious_low_confidence(0.05) benign(0.008) TCGA-DA-A1I0-06 6 168352766 168352766 C T MLLT4 Nonsense_Mutation p.Q1571* 0.30 TCGA-DA-A1I0-06 6 170627539 170627539 C T FAM120B Missense_Mutation p.P354L 0.24 deleterious(0) benign(0.005) TCGA-DA-A1I0-06 6 24178684 24178684 G A DCDC2 Silent p.R400R 0.38 TCGA-DA-A1I0-06 6 24467156 24467156 A C GPLD1 Missense_Mutation p.M222R 0.15 tolerated(0.84) benign(0.169) TCGA-DA-A1I0-06 6 30627938 30627938 G A DHX16 Silent p.F542F 0.21 TCGA-DA-A1I0-06 6 31560551 31560551 G A NCR3 5'UTR 0.26 TCGA-DA-A1I0-06 6 32609924 32609924 T A HLA-DQA1 Missense_Mutation p.H169Q 0.43 deleterious(0.03) benign(0.138) TCGA-DA-A1I0-06 6 33137226 33137226 C T COL11A2 Silent p.Q1158Q 0.35 TCGA-DA-A1I0-06 6 33284714 33284714 C T ZBTB22 5'UTR 0.61 TCGA-DA-A1I0-06 6 33284715 33284715 C T ZBTB22 5'UTR 0.53 TCGA-DA-A1I0-06 6 38545387 38545387 G A BTBD9 Silent p.A381A 0.24 TCGA-DA-A1I0-06 6 38899763 38899763 G A DNAH8 Silent p.E3600E 0.14 TCGA-DA-A1I0-06 6 40400324 40400324 G A LRFN2 Nonsense_Mutation p.Q177* 0.42 TCGA-DA-A1I0-06 6 42233525 42233525 G A TRERF1 Missense_Mutation p.P483L 0.20 deleterious(0.02) possibly_damaging(0.713) TCGA-DA-A1I0-06 6 43402557 43402557 C T ABCC10 Missense_Mutation p.L527F 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 6 46108078 46108078 C T ENPP4 Missense_Mutation p.S253F 0.21 tolerated(0.05) benign(0.191) TCGA-DA-A1I0-06 6 46801241 46801241 G A MEP1A Missense_Mutation p.M525I 0.13 deleterious(0.01) benign(0.1) TCGA-DA-A1I0-06 6 46977696 46977696 G A GPR110 Missense_Mutation p.P492L 0.41 deleterious(0) possibly_damaging(0.807) TCGA-DA-A1I0-06 6 46977814 46977814 G A GPR110 Missense_Mutation p.P453S 0.46 tolerated(0.75) benign(0.004) TCGA-DA-A1I0-06 6 49660439 49660439 G A CRISP2 3'UTR 0.20 TCGA-DA-A1I0-06 6 55147101 55147101 C T HCRTR2 Missense_Mutation p.T395I 0.15 tolerated(0.32) benign(0.002) TCGA-DA-A1I0-06 6 55989071 55989071 C T COL21A1 Missense_Mutation p.G557E 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 6 56047428 56047428 C T COL21A1 5'UTR 0.23 TCGA-DA-A1I0-06 6 76022272 76022272 G A FILIP1 Silent p.V1092V 0.29 TCGA-DA-A1I0-06 6 76527260 76527260 C T MYO6 5'UTR 0.25 TCGA-DA-A1I0-06 6 80724181 80724181 C T TTK Missense_Mutation p.S329F 0.25 tolerated(0.22) benign(0.275) TCGA-DA-A1I0-06 6 83926249 83926249 T A ME1 Missense_Mutation p.I506F 0.18 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I0-06 7 1008901 1008901 G A COX19 3'UTR 0.59 TCGA-DA-A1I0-06 7 105207530 105207530 G A EFCAB10 Intron 0.11 TCGA-DA-A1I0-06 7 112112285 112112285 T C IFRD1 Silent p.F351F 0.24 TCGA-DA-A1I0-06 7 115889119 115889119 C T TES Silent p.V53V 0.20 TCGA-DA-A1I0-06 7 116339804 116339804 G A MET Silent p.T222T 0.63 TCGA-DA-A1I0-06 7 116403266 116403266 C T MET Missense_Mutation p.P861S 0.55 tolerated(0.31) benign(0.147) TCGA-DA-A1I0-06 7 117023050 117023050 G A ASZ1 Missense_Mutation p.H268Y 0.16 tolerated(0.37) benign(0.001) TCGA-DA-A1I0-06 7 120686958 120686958 G A CPED1 Missense_Mutation p.D151N 0.09 tolerated(0.07) benign(0.028) TCGA-DA-A1I0-06 7 120876767 120876767 G A CPED1 Splice_Site p.X686_splice 0.12 TCGA-DA-A1I0-06 7 123270153 123270153 C A ASB15 Missense_Mutation p.P525Q 0.61 tolerated(0.07) benign(0.077) TCGA-DA-A1I0-06 7 128491542 128491542 A C FLNC Missense_Mutation p.K1901T 0.09 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I0-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.56 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I0-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.56 deleterious(0) possibly_damaging(0.838) TCGA-DA-A1I0-06 7 141464237 141464237 C T TAS2R3 Silent p.N93N 0.12 TCGA-DA-A1I0-06 7 141478951 141478951 G T TAS2R4 Missense_Mutation p.Q221H 0.10 deleterious(0.03) benign(0.109) TCGA-DA-A1I0-06 7 141536973 141536973 C T PRSS37 Missense_Mutation p.G169E 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 7 142428721 142428721 G A TRBV28 Silent p.S27S 0.67 TCGA-DA-A1I0-06 7 142428739 142428739 G A TRBV28 Silent p.R33R 0.16 TCGA-DA-A1I0-06 7 143027865 143027865 G A CLCN1 Missense_Mutation p.G285E 0.19 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I0-06 7 144077105 144077105 C T ARHGEF5 Nonsense_Mutation p.R1584* 0.12 TCGA-DA-A1I0-06 7 149492425 149492425 A G SSPO RNA 0.62 TCGA-DA-A1I0-06 7 150714955 150714955 G A ATG9B Intron 0.54 TCGA-DA-A1I0-06 7 21603884 21603884 C T DNAH11 Missense_Mutation p.P355S 0.48 possibly_damaging(0.905) TCGA-DA-A1I0-06 7 21805148 21805148 C T DNAH11 Missense_Mutation p.P3022S 0.48 possibly_damaging(0.857) TCGA-DA-A1I0-06 7 30692996 30692996 G A CRHR2 3'UTR 0.46 TCGA-DA-A1I0-06 7 38768159 38768159 G A VPS41 Missense_Mutation p.S796F 0.11 tolerated(0.08) benign(0.17) TCGA-DA-A1I0-06 7 4051763 4051763 G A SDK1 Silent p.P772P 0.52 TCGA-DA-A1I0-06 7 4056981 4056981 G A SDK1 Missense_Mutation p.G867R 0.54 deleterious(0.02) probably_damaging(0.992) TCGA-DA-A1I0-06 7 44578466 44578466 C T NPC1L1 Missense_Mutation p.M510I 0.09 tolerated(0.42) benign(0.007) TCGA-DA-A1I0-06 7 54610432 54610432 G A VSTM2A Silent p.G3G 0.52 TCGA-DA-A1I0-06 7 64453073 64453073 G A ERV3-1 Missense_Mutation p.P111L 0.21 tolerated(0.21) benign(0.181) TCGA-DA-A1I0-06 7 71177106 71177106 G A WBSCR17 Nonsense_Mutation p.W591* 0.30 TCGA-DA-A1I0-06 7 73009975 73009975 A C MLXIPL Missense_Mutation p.F768V 0.32 deleterious(0) possibly_damaging(0.838) TCGA-DA-A1I0-06 7 7483251 7483251 C T COL28A1 Missense_Mutation p.E539K 0.48 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I0-06 7 75933408 75933408 T A HSPB1 Missense_Mutation p.I179N 0.27 deleterious(0) possibly_damaging(0.812) TCGA-DA-A1I0-06 7 82585618 82585618 C T PCLO Missense_Mutation p.E1551K 0.24 unknown(0) TCGA-DA-A1I0-06 7 84694755 84694755 G A SEMA3D Missense_Mutation p.H235Y 0.21 deleterious(0.04) benign(0.022) TCGA-DA-A1I0-06 7 92732223 92732223 C T SAMD9 Missense_Mutation p.G1063E 0.16 tolerated(0.07) possibly_damaging(0.455) TCGA-DA-A1I0-06 7 92987678 92987678 C T CCDC132 Missense_Mutation p.S942F 0.20 deleterious(0.01) possibly_damaging(0.639) TCGA-DA-A1I0-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.45 probably_damaging(0.984) TCGA-DA-A1I0-06 8 101154218 101154218 A T FBXO43 Missense_Mutation p.N88K 0.14 tolerated(0.12) benign(0.215) TCGA-DA-A1I0-06 8 110099751 110099751 G A TRHR Missense_Mutation p.E4K 0.47 tolerated(0.91) benign(0.001) TCGA-DA-A1I0-06 8 110422196 110422196 G A PKHD1L1 Missense_Mutation p.D692N 0.42 tolerated(0.17) benign(0.007) TCGA-DA-A1I0-06 8 110457224 110457224 C T PKHD1L1 Missense_Mutation p.A1709V 0.10 tolerated(0.41) benign(0.005) TCGA-DA-A1I0-06 8 11162451 11162451 T G MTMR9 Silent p.L173L 0.25 TCGA-DA-A1I0-06 8 11162452 11162452 C T MTMR9 Missense_Mutation p.R174W 0.24 tolerated(0.09) benign(0.013) TCGA-DA-A1I0-06 8 113317024 113317024 C T CSMD3 Missense_Mutation p.G2731E 0.52 tolerated(0.27) possibly_damaging(0.796) TCGA-DA-A1I0-06 8 113318352 113318352 G A CSMD3 Missense_Mutation p.T2652M 0.08 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I0-06 8 11683691 11683691 C T FDFT1 Silent p.D223D 0.25 TCGA-DA-A1I0-06 8 121587439 121587439 C T SNTB1 Nonsense_Mutation p.W341* 0.21 TCGA-DA-A1I0-06 8 125082755 125082755 G A FER1L6 Nonsense_Mutation p.W1294* 0.14 TCGA-DA-A1I0-06 8 126448443 126448443 C T TRIB1 Silent p.P283P 0.58 TCGA-DA-A1I0-06 8 12878930 12878930 C T KIAA1456 Missense_Mutation p.R248C 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 8 133023051 133023051 C T EFR3A Missense_Mutation p.P792L 0.15 tolerated(0.07) probably_damaging(0.996) TCGA-DA-A1I0-06 8 133823396 133823396 T A PHF20L1 Intron 0.22 TCGA-DA-A1I0-06 8 133925383 133925383 C T TG Silent p.F1417F 0.53 TCGA-DA-A1I0-06 8 136470166 136470166 C T KHDRBS3 Silent p.S19S 0.17 TCGA-DA-A1I0-06 8 142178127 142178127 C G DENND3 Missense_Mutation p.P513R 0.20 deleterious(0.02) benign(0.07) TCGA-DA-A1I0-06 8 144550407 144550407 G A ZC3H3 Missense_Mutation p.P716L 0.52 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I0-06 8 17447050 17447050 G A PDGFRL Silent p.K43K 0.32 TCGA-DA-A1I0-06 8 24188673 24188673 C T ADAM28 Missense_Mutation p.P372S 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 8 33406291 33406291 G A RNF122 Silent p.L150L 0.24 TCGA-DA-A1I0-06 8 55541939 55541939 G A RP1 Missense_Mutation p.D1833N 0.22 deleterious(0.02) possibly_damaging(0.776) TCGA-DA-A1I0-06 8 68007843 68007843 C T CSPP1 Missense_Mutation p.R276C 0.13 tolerated(0.24) benign(0.002) TCGA-DA-A1I0-06 8 73849559 73849559 G A KCNB2 Missense_Mutation p.E657K 0.44 tolerated_low_confidence(0.87) benign(0.049) TCGA-DA-A1I0-06 8 81412391 81412391 A T ZBTB10 Missense_Mutation p.E545D 0.34 tolerated(0.08) benign(0.02) TCGA-DA-A1I0-06 8 87229736 87229736 C T SLC7A13 Missense_Mutation p.R381Q 0.08 deleterious(0.03) benign(0.112) TCGA-DA-A1I0-06 9 104432661 104432661 C T GRIN3A Nonsense_Mutation p.W678* 0.30 TCGA-DA-A1I0-06 9 107331891 107331891 C T OR13C8 Missense_Mutation p.S148F 0.32 deleterious(0) possibly_damaging(0.882) TCGA-DA-A1I0-06 9 113312198 113312198 C T SVEP1 Missense_Mutation p.E240K 0.15 probably_damaging(0.923) TCGA-DA-A1I0-06 9 113312199 113312199 C T SVEP1 Silent p.K239K 0.14 TCGA-DA-A1I0-06 9 113563006 113563006 C T MUSK Missense_Mutation p.S783F 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 9 117168916 117168916 G T DFNB31 Missense_Mutation p.A652D 0.28 deleterious(0) possibly_damaging(0.811) TCGA-DA-A1I0-06 9 119903705 119903705 C T ASTN2 Intron 0.16 TCGA-DA-A1I0-06 9 124971981 124971981 C T LHX6 Missense_Mutation p.G357E 0.40 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-DA-A1I0-06 9 125289194 125289194 G A OR1N1 Missense_Mutation p.P127S 0.30 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I0-06 9 125316247 125316247 C T OR1N2 Missense_Mutation p.L267F 0.26 deleterious(0.01) probably_damaging(0.919) TCGA-DA-A1I0-06 9 125865465 125865465 C T RABGAP1 Silent p.T1061T 0.18 TCGA-DA-A1I0-06 9 128678003 128678003 G A PBX3 Missense_Mutation p.D105N 0.36 tolerated(0.09) probably_damaging(0.999) TCGA-DA-A1I0-06 9 129937044 129937044 C T RALGPS1 Missense_Mutation p.S298F 0.26 deleterious(0) possibly_damaging(0.781) TCGA-DA-A1I0-06 9 131019295 131019295 G A GOLGA2 3'UTR 0.28 TCGA-DA-A1I0-06 9 131255052 131255052 C T ODF2 Missense_Mutation p.L574F 0.16 deleterious(0.01) possibly_damaging(0.875) TCGA-DA-A1I0-06 9 131607721 131607721 G A CCBL1 Intron 0.24 TCGA-DA-A1I0-06 9 135929310 135929310 C T GTF3C5 Silent p.I323I 0.23 TCGA-DA-A1I0-06 9 135942011 135942011 C T CEL Silent p.F214F 0.35 TCGA-DA-A1I0-06 9 136131230 136131230 G A RP11-430N14.4 5'Flank 0.28 TCGA-DA-A1I0-06 9 138377523 138377523 C T PPP1R26 Silent p.P389P 0.25 TCGA-DA-A1I0-06 9 14722314 14722314 C T CER1 Missense_Mutation p.M119I 0.19 tolerated(0.46) benign(0.003) TCGA-DA-A1I0-06 9 20953018 20953018 T C FOCAD Silent p.S1362S 0.33 TCGA-DA-A1I0-06 9 27192519 27192519 G A TEK Missense_Mutation p.E508K 0.24 tolerated(0.36) benign(0.019) TCGA-DA-A1I0-06 9 36087794 36087794 C T RECK Silent p.I247I 0.34 TCGA-DA-A1I0-06 9 37740121 37740121 G A FRMPD1 Silent p.V532V 0.29 TCGA-DA-A1I0-06 9 71628660 71628660 G A PRKACG Silent p.L117L 0.23 TCGA-DA-A1I0-06 9 72435858 72435858 C T C9orf135 Silent p.I21I 0.27 TCGA-DA-A1I0-06 9 72893539 72893539 G A SMC5 Missense_Mutation p.E226K 0.23 deleterious(0.01) possibly_damaging(0.876) TCGA-DA-A1I0-06 9 79946935 79946935 C T VPS13A Missense_Mutation p.H2001Y 0.26 deleterious(0.01) benign(0.077) TCGA-DA-A1I0-06 9 93650807 93650807 G A SYK Missense_Mutation p.G578E 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 9 95022473 95022473 G A IARS Missense_Mutation p.P611S 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A1I0-06 9 95846867 95846867 G A SUSD3 Silent p.V202V 0.26 TCGA-DA-A1I0-06 X 100911032 100911032 G A ARMCX2 Missense_Mutation p.R515C 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1I0-06 X 106109209 106109209 T C TBC1D8B Silent p.L870L 0.55 TCGA-DA-A1I0-06 X 11782026 11782026 C T MSL3 Missense_Mutation p.P293S 0.50 deleterious(0.02) possibly_damaging(0.472) TCGA-DA-A1I0-06 X 13058954 13058954 C T FAM9C Silent p.R84R 0.58 TCGA-DA-A1I0-06 X 138878606 138878606 G A ATP11C Silent p.F347F 0.53 TCGA-DA-A1I0-06 X 139865809 139865809 C T CDR1 Nonsense_Mutation p.W241* 0.53 TCGA-DA-A1I0-06 X 140995266 140995266 C T MAGEC1 Silent p.L692L 0.53 TCGA-DA-A1I0-06 X 1501364 1501364 G A IL3RA 3'UTR 0.26 TCGA-DA-A1I0-06 X 151453208 151453208 C T GABRA3 Splice_Site p.X88_splice 0.65 TCGA-DA-A1I0-06 X 24229353 24229353 T G ZFX Missense_Mutation p.S760A 0.44 deleterious(0.03) probably_damaging(0.977) TCGA-DA-A1I0-06 X 2541473 2541473 C T CD99P1 RNA 0.22 TCGA-DA-A1I0-06 X 3228258 3228258 G A MXRA5 Silent p.P2662P 0.52 TCGA-DA-A1I0-06 X 34148922 34148922 G A FAM47A Missense_Mutation p.H492Y 0.45 tolerated(0.46) benign(0.271) TCGA-DA-A1I0-06 X 36117968 36117968 G A CHDC2 Nonsense_Mutation p.W275* 0.39 TCGA-DA-A1I0-06 X 41202462 41202468 TTAACAG - DDX3X Splice_Site p.X182_splice 0.26 TCGA-DA-A1I0-06 X 47516644 47516644 G A UXT Silent p.F110F 0.55 TCGA-DA-A1I0-06 X 70148819 70148819 G A SLC7A3 Missense_Mutation p.A135V 0.55 deleterious(0.05) benign(0.084) TCGA-DA-A1I0-06 X 71840661 71840661 C T PHKA1 Missense_Mutation p.G684E 0.60 tolerated(0.13) benign(0.04) TCGA-DA-A1I0-06 X 83419355 83419355 C T RPS6KA6 Missense_Mutation p.G41E 0.33 tolerated(0.93) benign(0.001) TCGA-DA-A1I0-06 X 83419356 83419356 C T RPS6KA6 Missense_Mutation p.G41R 0.33 tolerated(0.34) benign(0.067) TCGA-DA-A1I1-06 10 101292839 101292839 C T NKX2-3 5'UTR 0.15 TCGA-DA-A1I1-06 10 102256030 102256030 G C SEC31B Silent p.P765P 0.23 TCGA-DA-A1I1-06 10 104860814 104860814 G A NT5C2 Missense_Mutation p.P176L 0.25 tolerated(0.12) benign(0.082) TCGA-DA-A1I1-06 10 107022168 107022168 G A SORCS3 Missense_Mutation p.E1175K 0.40 deleterious(0.03) benign(0.099) TCGA-DA-A1I1-06 10 111860448 111860448 C T ADD3 Missense_Mutation p.P13S 0.33 deleterious(0.04) benign(0.028) TCGA-DA-A1I1-06 10 115947899 115947899 G A TDRD1 Silent p.R103R 0.28 TCGA-DA-A1I1-06 10 126454046 126454046 G A METTL10 Silent p.L177L 0.23 TCGA-DA-A1I1-06 10 12940380 12940380 G A CCDC3 3'UTR 0.33 TCGA-DA-A1I1-06 10 28378684 28378684 C T MPP7 Missense_Mutation p.D347N 0.27 tolerated(0.12) probably_damaging(0.982) TCGA-DA-A1I1-06 10 30317117 30317117 C T KIAA1462 Missense_Mutation p.E654K 0.14 tolerated(0.3) possibly_damaging(0.487) TCGA-DA-A1I1-06 10 38299687 38299687 G A ZNF33A 5'UTR 0.43 TCGA-DA-A1I1-06 10 45799503 45799503 G A OR13A1 Missense_Mutation p.T123M 0.43 deleterious(0.01) possibly_damaging(0.781) TCGA-DA-A1I1-06 10 52619701 52619701 T A A1CF 5'UTR 0.19 TCGA-DA-A1I1-06 10 68526075 68526075 C T CTNNA3 Missense_Mutation p.E410K 0.38 tolerated(0.11) possibly_damaging(0.57) TCGA-DA-A1I1-06 10 68687116 68687116 C T LRRTM3 Silent p.L148L 0.18 TCGA-DA-A1I1-06 10 71873973 71873973 G A AIFM2 Silent p.V361V 0.30 TCGA-DA-A1I1-06 10 72631691 72631691 C T SGPL1 Missense_Mutation p.P336L 0.17 tolerated(0.12) benign(0.032) TCGA-DA-A1I1-06 10 73046583 73046583 C T UNC5B Silent p.I230I 0.33 TCGA-DA-A1I1-06 10 76868835 76868835 G A DUSP13 Silent p.L27L 0.30 TCGA-DA-A1I1-06 10 95347054 95347054 G A FFAR4 Silent p.Q274Q 0.20 TCGA-DA-A1I1-06 10 96708970 96708970 G A CYP2C9 Missense_Mutation p.E250K 0.20 tolerated(0.08) benign(0.137) TCGA-DA-A1I1-06 10 97987287 97987287 G A BLNK Silent p.D80D 0.24 TCGA-DA-A1I1-06 10 98744728 98744728 C T C10orf12 Missense_Mutation p.S1194F 0.16 deleterious(0) probably_damaging(0.973) TCGA-DA-A1I1-06 11 100061917 100061917 G A CNTN5 Missense_Mutation p.G547E 0.47 deleterious(0) probably_damaging(0.992) TCGA-DA-A1I1-06 11 10647940 10647940 C T MRVI1 Missense_Mutation p.G314E 0.69 deleterious(0.03) probably_damaging(0.988) TCGA-DA-A1I1-06 11 114168772 114168772 A G NNMT Missense_Mutation p.D85G 0.27 deleterious(0) probably_damaging(0.981) TCGA-DA-A1I1-06 11 117332272 117332272 G A DSCAML1 Silent p.I1162I 0.49 TCGA-DA-A1I1-06 11 120008004 120008004 G A TRIM29 Missense_Mutation p.L246F 0.49 deleterious(0.02) probably_damaging(1) TCGA-DA-A1I1-06 11 120702622 120702622 C - GRIK4 Frame_Shift_Del p.R192Afs*38 0.13 TCGA-DA-A1I1-06 11 124252578 124252578 A T OR8B2 Missense_Mutation p.I221N 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A1I1-06 11 1578618 1578618 G A DUSP8 Silent p.T336T 0.54 TCGA-DA-A1I1-06 11 17794121 17794121 G A KCNC1 Missense_Mutation p.E494K 0.56 deleterious_low_confidence(0.03) probably_damaging(0.911) TCGA-DA-A1I1-06 11 18232101 18232101 G A RP11-113D6.10 3'UTR 0.50 TCGA-DA-A1I1-06 11 32636437 32636437 G A CCDC73 Missense_Mutation p.S476F 0.49 tolerated(0.13) benign(0.009) TCGA-DA-A1I1-06 11 55135946 55135946 T C OR4A15 Missense_Mutation p.F196S 0.51 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DA-A1I1-06 11 55735718 55735718 C T OR10AG1 Missense_Mutation p.M74I 0.53 tolerated(0.19) benign(0.007) TCGA-DA-A1I1-06 11 56085993 56085993 C T OR8K3 Missense_Mutation p.L71F 0.47 tolerated_low_confidence(0.05) benign(0.388) TCGA-DA-A1I1-06 11 57995465 57995465 A G OR10Q1 Missense_Mutation p.Y295H 0.54 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 11 60701119 60701119 C G TMEM132A Missense_Mutation p.L489V 0.57 tolerated(0.54) benign(0.076) TCGA-DA-A1I1-06 11 65373427 65373427 G A MAP3K11 Nonsense_Mutation p.Q577* 0.55 TCGA-DA-A1I1-06 11 66436569 66436569 G A RBM4B Silent p.T202T 0.70 TCGA-DA-A1I1-06 11 67219543 67219543 G A GPR152 Missense_Mutation p.T218I 0.50 tolerated(0.07) benign(0.077) TCGA-DA-A1I1-06 11 70505938 70505938 T G SHANK2 Missense_Mutation p.I687L 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-DA-A1I1-06 11 72289953 72289953 C T PDE2A Silent p.T819T 0.61 TCGA-DA-A1I1-06 11 85375616 85375616 G A CREBZF Silent p.L102L 0.49 TCGA-DA-A1I1-06 11 92085966 92085966 G A FAT3 Missense_Mutation p.E230K 0.55 probably_damaging(0.999) TCGA-DA-A1I1-06 11 9519279 9519279 C T ZNF143 Missense_Mutation p.S300L 0.54 deleterious(0.01) benign(0.081) TCGA-DA-A1I1-06 12 100934528 100934528 C T NR1H4 Missense_Mutation p.A347V 0.48 deleterious(0) probably_damaging(0.948) TCGA-DA-A1I1-06 12 111088039 111088039 C T HVCN1 Silent p.R230R 0.43 TCGA-DA-A1I1-06 12 111088040 111088040 C T HVCN1 Missense_Mutation p.R230K 0.43 tolerated(1) benign(0.005) TCGA-DA-A1I1-06 12 113748128 113748128 C T SLC8B1 Missense_Mutation p.V390I 0.24 tolerated(0.19) benign(0.009) TCGA-DA-A1I1-06 12 13716008 13716008 G A GRIN2B Silent p.I1388I 0.62 TCGA-DA-A1I1-06 12 14613792 14613792 C T ATF7IP Missense_Mutation p.P841L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1I1-06 12 27869317 27869317 C T MRPS35 Missense_Mutation p.L83F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 12 29640716 29640716 G A OVCH1 Missense_Mutation p.P268S 0.82 tolerated(1) benign(0.002) TCGA-DA-A1I1-06 12 32755144 32755144 C T FGD4 Missense_Mutation p.L296F 0.48 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I1-06 12 47186851 47186851 C T SLC38A4 Missense_Mutation p.D2N 0.55 tolerated_low_confidence(0.09) benign(0.004) TCGA-DA-A1I1-06 12 49666155 49666155 C T TUBA1C Silent p.S165S 0.61 TCGA-DA-A1I1-06 12 53002213 53002213 C T KRT73 Missense_Mutation p.G464R 0.56 deleterious_low_confidence(0.03) benign(0.066) TCGA-DA-A1I1-06 12 542408 542408 C T CCDC77 Silent p.I247I 0.49 TCGA-DA-A1I1-06 12 69965945 69965945 C T FRS2 Missense_Mutation p.P154S 0.60 deleterious(0.05) benign(0.03) TCGA-DA-A1I1-06 12 71148001 71148001 G T PTPRR Missense_Mutation p.S236R 0.65 deleterious(0.01) probably_damaging(0.933) TCGA-DA-A1I1-06 12 71946885 71946885 C T LGR5 Missense_Mutation p.P154L 0.56 deleterious(0) probably_damaging(0.989) TCGA-DA-A1I1-06 12 81528708 81528708 G A ACSS3 Silent p.R190R 0.49 TCGA-DA-A1I1-06 12 86373303 86373303 G A MGAT4C Missense_Mutation p.R401W 0.53 deleterious(0) probably_damaging(0.972) TCGA-DA-A1I1-06 13 110826835 110826835 G A COL4A1 Missense_Mutation p.L1122F 0.32 possibly_damaging(0.895) TCGA-DA-A1I1-06 13 31233315 31233315 C T USPL1 Missense_Mutation p.P1034L 0.17 tolerated(0.22) benign(0.002) TCGA-DA-A1I1-06 13 33635751 33635751 G A KL Silent p.V845V 0.43 TCGA-DA-A1I1-06 13 39264404 39264404 G A FREM2 Missense_Mutation p.E975K 0.20 deleterious(0.01) benign(0.017) TCGA-DA-A1I1-06 13 42161701 42161701 C T VWA8 Missense_Mutation p.E1740K 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 13 52542601 52542601 G A ATP7B Silent p.S562S 0.35 TCGA-DA-A1I1-06 13 53048016 53048016 T - CKAP2 Frame_Shift_Del p.S534Rfs*9 0.32 TCGA-DA-A1I1-06 13 70314530 70314530 C T KLHL1 Missense_Mutation p.G600S 0.45 tolerated(0.22) possibly_damaging(0.629) TCGA-DA-A1I1-06 13 86368401 86368401 G A SLITRK6 Missense_Mutation p.S748F 0.24 deleterious(0) benign(0.309) TCGA-DA-A1I1-06 13 99354778 99354778 C T SLC15A1 Silent p.K474K 0.17 TCGA-DA-A1I1-06 14 101348386 101348386 C T RTL1 Missense_Mutation p.E914K 0.58 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1I1-06 14 101453405 101453405 G A SNORD114-26 RNA 0.44 TCGA-DA-A1I1-06 14 102699985 102699985 G A MOK Intron 0.44 TCGA-DA-A1I1-06 14 106054206 106054206 G A IGHA2 Missense_Mutation p.P105S 0.55 tolerated(0.47) benign(0.017) TCGA-DA-A1I1-06 14 20404763 20404763 G A OR4K1 3'UTR 0.23 TCGA-DA-A1I1-06 14 20586246 20586246 G A OR4K17 Silent p.Q227Q 0.57 TCGA-DA-A1I1-06 14 55529570 55529570 C T MAPK1IP1L Missense_Mutation p.P85S 0.44 tolerated_low_confidence(0.1) probably_damaging(0.932) TCGA-DA-A1I1-06 14 63174630 63174630 T A KCNH5 Nonsense_Mutation p.K855* 0.56 TCGA-DA-A1I1-06 14 70713587 70713587 C T ADAM21P1 RNA 0.45 TCGA-DA-A1I1-06 14 93730210 93730210 G A BTBD7 Missense_Mutation p.S431F 0.57 deleterious(0.02) benign(0.44) TCGA-DA-A1I1-06 14 94568857 94568857 C T IFI27L1 Silent p.I86I 0.60 TCGA-DA-A1I1-06 14 95109969 95109969 G A SERPINA13P RNA 0.65 TCGA-DA-A1I1-06 15 23889196 23889196 C T MAGEL2 Missense_Mutation p.E629K 0.54 deleterious_low_confidence(0.02) benign(0.272) TCGA-DA-A1I1-06 15 28420712 28420712 G A HERC2 Silent p.I3259I 0.52 TCGA-DA-A1I1-06 15 41483761 41483761 G A EXD1 Missense_Mutation p.S190F 0.54 tolerated(0.1) benign(0.364) TCGA-DA-A1I1-06 15 41483766 41483766 C T EXD1 Silent p.Q188Q 0.54 TCGA-DA-A1I1-06 15 43552268 43552268 A T TGM5 Missense_Mutation p.F140I 0.53 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I1-06 15 43931985 43931985 G A CATSPER2 Silent p.P191P 0.44 TCGA-DA-A1I1-06 15 59548558 59548558 G A MYO1E Missense_Mutation p.P86L 0.61 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 15 66844489 66844489 G A LCTL Missense_Mutation p.P406S 0.51 tolerated(0.13) benign(0.023) TCGA-DA-A1I1-06 15 74180852 74180852 G A TBC1D21 Missense_Mutation p.D326N 0.36 tolerated(0.07) benign(0.242) TCGA-DA-A1I1-06 15 79056996 79056996 G A ADAMTS7 Silent p.S1440S 0.55 TCGA-DA-A1I1-06 15 79298587 79298587 G A RASGRF1 Silent p.I685I 0.48 TCGA-DA-A1I1-06 15 82444475 82444475 G A EFTUD1 Missense_Mutation p.R774C 0.49 deleterious(0) probably_damaging(0.985) TCGA-DA-A1I1-06 15 84705531 84705531 C T ADAMTSL3 Silent p.T1587T 0.33 TCGA-DA-A1I1-06 15 95013671 95013671 G A MCTP2 Missense_Mutation p.G824S 0.51 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I1-06 16 20638573 20638573 C T ACSM1 Silent p.K455K 0.17 TCGA-DA-A1I1-06 16 22130237 22130237 G A VWA3A Silent p.R335R 0.27 TCGA-DA-A1I1-06 16 23700835 23700835 C T PLK1 Silent p.F482F 0.28 TCGA-DA-A1I1-06 16 24268056 24268056 C T CACNG3 5'UTR 0.41 TCGA-DA-A1I1-06 16 27374897 27374897 C T IL4R Missense_Mutation p.P742S 0.19 tolerated(0.05) possibly_damaging(0.69) TCGA-DA-A1I1-06 16 2815721 2815721 C T SRRM2 Missense_Mutation p.S1731F 0.48 benign(0.184) TCGA-DA-A1I1-06 16 31336917 31336917 C T ITGAM Missense_Mutation p.H869Y 0.37 deleterious(0.03) benign(0.175) TCGA-DA-A1I1-06 16 4494683 4494683 C T DNAJA3 Missense_Mutation p.T317I 0.21 deleterious(0) probably_damaging(0.964) TCGA-DA-A1I1-06 16 55735810 55735810 C T SLC6A2 Silent p.H598H 0.21 TCGA-DA-A1I1-06 16 56920313 56920313 C T SLC12A3 Missense_Mutation p.R655C 0.15 deleterious(0.02) probably_damaging(1) TCGA-DA-A1I1-06 16 61891121 61891121 G C CDH8 Missense_Mutation p.T190S 0.23 deleterious(0.02) probably_damaging(0.922) TCGA-DA-A1I1-06 16 69373524 69373524 G A NIP7 5'UTR 0.42 TCGA-DA-A1I1-06 16 69965485 69965485 T C WWP2 Splice_Site p.X531_splice 0.25 TCGA-DA-A1I1-06 16 76572238 76572238 G A CNTNAP4 Splice_Site p.X1001_splice 0.49 TCGA-DA-A1I1-06 16 81295908 81295908 C T BCMO1 Intron 0.18 TCGA-DA-A1I1-06 16 824895 824895 C T MSLNL Silent p.L559L 0.36 TCGA-DA-A1I1-06 16 84801964 84801964 G A USP10 Silent p.E666E 0.38 TCGA-DA-A1I1-06 17 12626325 12626325 G A MYOCD Missense_Mutation p.G139S 0.35 deleterious(0.03) probably_damaging(0.953) TCGA-DA-A1I1-06 17 1783889 1783889 G A RPA1 Missense_Mutation p.R382Q 0.47 deleterious(0) possibly_damaging(0.894) TCGA-DA-A1I1-06 17 18023419 18023419 G A MYO15A Silent p.L435L 0.42 TCGA-DA-A1I1-06 17 2867270 2867270 G A RAP1GAP2 Missense_Mutation p.E134K 0.23 tolerated(0.09) benign(0.006) TCGA-DA-A1I1-06 17 3030147 3030147 C T OR1G1 Silent p.G233G 0.41 TCGA-DA-A1I1-06 17 3563665 3563665 A C CTNS Intron 0.12 TCGA-DA-A1I1-06 17 3563666 3563666 C T CTNS Intron 0.12 TCGA-DA-A1I1-06 17 39022420 39022420 C T KRT12 Missense_Mutation p.D213N 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 17 39138585 39138585 G A KRT40 Missense_Mutation p.L221F 0.20 deleterious(0.04) benign(0.067) TCGA-DA-A1I1-06 17 39596778 39596778 C T KRT38 Silent p.L132L 0.41 TCGA-DA-A1I1-06 17 44101502 44101502 G A MAPT Missense_Mutation p.E766K 0.29 deleterious(0.01) possibly_damaging(0.766) TCGA-DA-A1I1-06 17 47788722 47788722 C T FAM117A Silent p.R419R 0.14 TCGA-DA-A1I1-06 17 53024633 53024633 G A TOM1L1 Missense_Mutation p.R381K 0.36 tolerated(0.07) benign(0.052) TCGA-DA-A1I1-06 17 53024634 53024634 G A TOM1L1 Silent p.R381R 0.35 TCGA-DA-A1I1-06 17 55752377 55752377 C T MSI2 Missense_Mutation p.P279S 0.28 deleterious(0) possibly_damaging(0.87) TCGA-DA-A1I1-06 17 55752378 55752378 C T MSI2 Missense_Mutation p.P279L 0.27 deleterious(0) benign(0.26) TCGA-DA-A1I1-06 17 59858249 59858249 C T BRIP1 Silent p.Q582Q 0.37 TCGA-DA-A1I1-06 17 61564371 61564371 G A ACE Missense_Mutation p.E748K 0.41 deleterious(0.03) possibly_damaging(0.762) TCGA-DA-A1I1-06 17 680169 680169 A G GLOD4 Missense_Mutation p.F67S 0.17 deleterious(0) probably_damaging(0.984) TCGA-DA-A1I1-06 17 71354325 71354325 C T SDK2 Missense_Mutation p.G1829D 0.28 tolerated(0.59) probably_damaging(0.987) TCGA-DA-A1I1-06 17 71429938 71429938 A T SDK2 Missense_Mutation p.D415E 0.64 tolerated(0.16) possibly_damaging(0.588) TCGA-DA-A1I1-06 17 7189301 7189301 C T SLC2A4 Intron 0.50 TCGA-DA-A1I1-06 17 74733091 74733091 G A SRSF2 Missense_Mutation p.T51I 0.21 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I1-06 17 77915897 77915897 G A TBC1D16 Silent p.L673L 0.26 TCGA-DA-A1I1-06 17 80887047 80887047 C T TBCD Missense_Mutation p.R918C 0.44 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I1-06 17 80915340 80915340 G A B3GNTL1 Silent p.F252F 0.42 TCGA-DA-A1I1-06 17 8132659 8132659 G A CTC1 Silent p.L1039L 0.40 TCGA-DA-A1I1-06 18 13826027 13826027 C T MC5R Missense_Mutation p.S88F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 18 2595414 2595414 G A NDC80 Splice_Site p.X339_splice 0.26 TCGA-DA-A1I1-06 18 28648157 28648157 C T DSC2 Missense_Mutation p.D844N 0.35 tolerated(0.43) benign(0.032) TCGA-DA-A1I1-06 18 2891242 2891242 G A EMILIN2 Missense_Mutation p.E373K 0.34 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I1-06 18 30092777 30092777 C T WBP11P1 RNA 0.31 TCGA-DA-A1I1-06 18 31319760 31319760 A T ASXL3 Missense_Mutation p.T798S 0.34 benign(0.021) TCGA-DA-A1I1-06 18 31319761 31319761 C T ASXL3 Missense_Mutation p.T798I 0.31 benign(0) TCGA-DA-A1I1-06 18 320042 320042 C T COLEC12 3'UTR 0.31 TCGA-DA-A1I1-06 18 32391985 32391985 C T DTNA Missense_Mutation p.L171F 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 18 32825358 32825358 C T ZNF397 Missense_Mutation p.T230I 0.54 tolerated(0.2) benign(0.001) TCGA-DA-A1I1-06 18 39613899 39613899 C T PIK3C3 Missense_Mutation p.P606L 0.25 deleterious(0.01) benign(0.261) TCGA-DA-A1I1-06 18 47479662 47479662 C T MYO5B Missense_Mutation p.E574K 0.28 deleterious(0) possibly_damaging(0.707) TCGA-DA-A1I1-06 18 48703658 48703658 G A MEX3C Missense_Mutation p.T348I 0.41 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I1-06 18 48703659 48703659 T A MEX3C Missense_Mutation p.T348S 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 18 55218048 55218048 G A FECH Nonsense_Mutation p.Q396* 0.25 TCGA-DA-A1I1-06 18 66504023 66504023 G A CCDC102B Missense_Mutation p.R8Q 0.41 tolerated(0.1) benign(0.099) TCGA-DA-A1I1-06 19 12807335 12807335 C T FBXW9 Missense_Mutation p.E21K 0.32 deleterious_low_confidence(0.01) benign(0.275) TCGA-DA-A1I1-06 19 12858889 12858889 G A ASNA1 Missense_Mutation p.E340K 0.41 tolerated(1) benign(0.006) TCGA-DA-A1I1-06 19 15562704 15562704 C T RASAL3 Missense_Mutation p.D980N 0.30 tolerated(0.31) benign(0.014) TCGA-DA-A1I1-06 19 15769601 15769601 C T CYP4F3 Missense_Mutation p.P460L 0.11 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I1-06 19 2878181 2878181 G A ZNF556 Missense_Mutation p.G409R 0.47 tolerated(0.35) benign(0.297) TCGA-DA-A1I1-06 19 35085114 35085114 G A SCGB2B2 Missense_Mutation p.S71F 0.36 tolerated_low_confidence(0.1) probably_damaging(0.951) TCGA-DA-A1I1-06 19 35449270 35449270 G A ZNF792 Missense_Mutation p.R497W 0.35 tolerated(0.15) probably_damaging(0.993) TCGA-DA-A1I1-06 19 35741251 35741251 A G LSR Missense_Mutation p.N96S 0.18 deleterious(0.03) benign(0.01) TCGA-DA-A1I1-06 19 36045841 36045841 C T ATP4A Missense_Mutation p.E822K 0.31 deleterious(0) possibly_damaging(0.536) TCGA-DA-A1I1-06 19 37879205 37879205 C T ZNF527 Intron 0.12 TCGA-DA-A1I1-06 19 38817597 38817597 C T KCNK6 Silent p.P229P 0.29 TCGA-DA-A1I1-06 19 40581034 40581034 G A ZNF780A Missense_Mutation p.H440Y 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I1-06 19 41594468 41594468 G A CYP2A13 Missense_Mutation p.G31E 0.42 tolerated(0.07) benign(0.047) TCGA-DA-A1I1-06 19 42482346 42482346 G A ATP1A3 Missense_Mutation p.A601V 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1I1-06 19 42818469 42818469 C T TMEM145 Nonsense_Mutation p.R56* 0.18 TCGA-DA-A1I1-06 19 43689216 43689216 C T PSG5 Missense_Mutation p.D50N 0.28 tolerated(0.1) probably_damaging(0.975) TCGA-DA-A1I1-06 19 44792215 44792215 G A ZNF235 Missense_Mutation p.P458L 0.23 deleterious(0.04) probably_damaging(1) TCGA-DA-A1I1-06 19 49005799 49005799 C T LMTK3 Missense_Mutation p.E258K 0.12 possibly_damaging(0.636) TCGA-DA-A1I1-06 19 50390749 50390750 CT - TBC1D17 Frame_Shift_Del p.C490Lfs*60 0.22 TCGA-DA-A1I1-06 19 51021119 51021119 G A LRRC4B Silent p.I617I 0.33 TCGA-DA-A1I1-06 19 51135965 51135965 C T SYT3 Silent p.R84R 0.30 TCGA-DA-A1I1-06 19 51217085 51217085 G A SHANK1 Silent p.A254A 0.50 TCGA-DA-A1I1-06 19 51328977 51328977 C T KLK15 3'Flank 0.40 TCGA-DA-A1I1-06 19 52147044 52147044 G A SIGLEC14 Missense_Mutation p.L334F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I1-06 19 53912812 53912812 C T ZNF765 3'UTR 0.67 TCGA-DA-A1I1-06 19 5456123 5456123 C T ZNRF4 Silent p.I207I 0.51 TCGA-DA-A1I1-06 19 54697242 54697242 C T TSEN34 3'UTR 0.73 TCGA-DA-A1I1-06 19 55221524 55221524 A C AC098784.2 3'Flank 0.41 TCGA-DA-A1I1-06 19 55494681 55494681 C T NLRP2 Missense_Mutation p.L539F 0.42 tolerated(0.35) benign(0.294) TCGA-DA-A1I1-06 19 56416401 56416401 C G NLRP13 Missense_Mutation p.R842P 0.41 tolerated(0.22) probably_damaging(0.996) TCGA-DA-A1I1-06 19 56459306 56459306 C T NLRP8 Missense_Mutation p.P13L 0.37 tolerated_low_confidence(0.25) possibly_damaging(0.713) TCGA-DA-A1I1-06 19 57327768 57327768 T C PEG3 Missense_Mutation p.K681R 0.23 tolerated(0.58) benign(0.008) TCGA-DA-A1I1-06 19 7812434 7812434 G A CD209 5'Flank 0.42 TCGA-DA-A1I1-06 19 8618261 8618261 C T MYO1F Silent p.K129K 0.27 TCGA-DA-A1I1-06 19 9083532 9083532 G A MUC16 Silent p.F2761F 0.14 TCGA-DA-A1I1-06 19 9585962 9585962 G A ZNF560 Nonsense_Mutation p.Q10* 0.39 TCGA-DA-A1I1-06 1 100345591 100345591 C T AGL Missense_Mutation p.S575F 0.17 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I1-06 1 100613462 100613462 G A TRMT13 Missense_Mutation p.R277Q 0.22 deleterious(0.02) probably_damaging(0.972) TCGA-DA-A1I1-06 1 10468150 10468150 C T PGD Nonsense_Mutation p.Q158* 0.14 TCGA-DA-A1I1-06 1 112298231 112298231 G A DDX20 5'UTR 0.21 TCGA-DA-A1I1-06 1 112524806 112524806 C T KCND3 Silent p.L181L 0.40 TCGA-DA-A1I1-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.42 deleterious(0) benign(0.109) TCGA-DA-A1I1-06 1 117311131 117311131 G A CD2 Missense_Mutation p.R261K 0.11 tolerated(0.26) benign(0.105) TCGA-DA-A1I1-06 1 120466558 120466558 C T NOTCH2 Missense_Mutation p.G1521R 0.38 deleterious(0) probably_damaging(0.991) TCGA-DA-A1I1-06 1 12368617 12368617 C T VPS13D Missense_Mutation p.S2190F 0.20 probably_damaging(0.991) TCGA-DA-A1I1-06 1 143767313 143767313 G A PPIAL4G 3'UTR 0.08 TCGA-DA-A1I1-06 1 146631137 146631137 G A PRKAB2 3'UTR 0.43 TCGA-DA-A1I1-06 1 152323507 152323507 C T FLG2 Missense_Mutation p.G2252E 0.30 possibly_damaging(0.475) TCGA-DA-A1I1-06 1 152733161 152733161 C T KPRP Missense_Mutation p.S366F 0.32 deleterious(0.04) benign(0.081) TCGA-DA-A1I1-06 1 15546075 15546075 C T TMEM51 Missense_Mutation p.P200S 0.43 tolerated(0.06) probably_damaging(0.999) TCGA-DA-A1I1-06 1 156593852 156593852 G A HAPLN2 Silent p.L113L 0.35 TCGA-DA-A1I1-06 1 156593853 156593853 G A HAPLN2 Missense_Mutation p.V114I 0.38 tolerated(0.24) benign(0.006) TCGA-DA-A1I1-06 1 156815164 156815164 C T INSRR Missense_Mutation p.R739K 0.26 tolerated(0.36) benign(0.046) TCGA-DA-A1I1-06 1 158225031 158225031 G A CD1A Silent p.R72R 0.30 TCGA-DA-A1I1-06 1 158368576 158368576 C T OR10T2 Silent p.L227L 0.39 TCGA-DA-A1I1-06 1 158592976 158592976 G T SPTA1 Missense_Mutation p.L1973M 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-DA-A1I1-06 1 158592977 158592977 A G SPTA1 Silent p.T1972T 0.48 TCGA-DA-A1I1-06 1 15892468 15892468 C T DNAJC16 Silent p.F551F 0.38 TCGA-DA-A1I1-06 1 159505246 159505246 C T OR10J5 Missense_Mutation p.M184I 0.23 tolerated(0.41) benign(0.05) TCGA-DA-A1I1-06 1 160851073 160851073 C T ITLN1 Silent p.K145K 0.28 TCGA-DA-A1I1-06 1 161047265 161047265 G A PVRL4 Silent p.I236I 0.30 TCGA-DA-A1I1-06 1 161163784 161163784 G A ADAMTS4 Missense_Mutation p.P497S 0.44 tolerated(0.34) benign(0) TCGA-DA-A1I1-06 1 162353282 162353282 G A C1orf226 Missense_Mutation p.E253K 0.57 tolerated(0.1) possibly_damaging(0.718) TCGA-DA-A1I1-06 1 170521409 170521409 C T GORAB Missense_Mutation p.R331C 0.40 tolerated_low_confidence(0.14) benign(0.024) TCGA-DA-A1I1-06 1 179561892 179561892 C T TDRD5 Missense_Mutation p.L48F 0.39 deleterious(0) probably_damaging(0.993) TCGA-DA-A1I1-06 1 181018257 181018257 C T MR1 Missense_Mutation p.S46L 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-DA-A1I1-06 1 181701796 181701796 G A CACNA1E Silent p.G858G 0.36 TCGA-DA-A1I1-06 1 18808853 18808853 G A KLHDC7A Missense_Mutation p.E460K 0.47 deleterious(0) benign(0.058) TCGA-DA-A1I1-06 1 196309670 196309670 C T KCNT2 Silent p.R528R 0.21 TCGA-DA-A1I1-06 1 197094013 197094013 G A ASPM Missense_Mutation p.A1052V 0.20 tolerated(0.8) benign(0.046) TCGA-DA-A1I1-06 1 198608367 198608367 C T PTPRC 5'UTR 0.18 TCGA-DA-A1I1-06 1 201972397 201972397 G A RNPEP Missense_Mutation p.G487S 0.32 deleterious(0.03) possibly_damaging(0.872) TCGA-DA-A1I1-06 1 202915670 202915670 A G ADIPOR1 Silent p.Y109Y 0.18 TCGA-DA-A1I1-06 1 203188447 203188447 C T CHIT1 Nonsense_Mutation p.W309* 0.41 TCGA-DA-A1I1-06 1 204956614 204956614 C T NFASC Missense_Mutation p.H847Y 0.39 tolerated(0.34) probably_damaging(0.924) TCGA-DA-A1I1-06 1 20517722 20517722 C T UBXN10 Missense_Mutation p.T223I 0.15 deleterious(0.02) possibly_damaging(0.881) TCGA-DA-A1I1-06 1 209968740 209968740 C T IRF6 Missense_Mutation p.D135N 0.27 tolerated(0.28) benign(0.276) TCGA-DA-A1I1-06 1 214557829 214557829 G A PTPN14 Silent p.L457L 0.40 TCGA-DA-A1I1-06 1 215259778 215259778 C T KCNK2 Silent p.S38S 0.20 TCGA-DA-A1I1-06 1 222806471 222806471 T C MIA3 Silent p.P1119P 0.06 TCGA-DA-A1I1-06 1 223285632 223285632 T C TLR5 Missense_Mutation p.N248D 0.20 tolerated(0.51) benign(0.004) TCGA-DA-A1I1-06 1 223566964 223566964 G A C1orf65 Silent p.P49P 0.08 TCGA-DA-A1I1-06 1 22923821 22923821 C T EPHA8 Silent p.F594F 0.39 TCGA-DA-A1I1-06 1 231376911 231376911 C T C1orf131 5'UTR 0.25 TCGA-DA-A1I1-06 1 231673041 231673041 A G TSNAX Silent p.K68K 0.41 TCGA-DA-A1I1-06 1 237969462 237969462 T C RYR2 Missense_Mutation p.M4726T 0.16 possibly_damaging(0.537) TCGA-DA-A1I1-06 1 23836608 23836608 G A E2F2 Missense_Mutation p.P360S 0.47 tolerated(0.85) benign(0.316) TCGA-DA-A1I1-06 1 242023851 242023851 G A EXO1 Missense_Mutation p.M263I 0.42 deleterious(0.02) benign(0.189) TCGA-DA-A1I1-06 1 247654597 247654597 C A OR2W5 RNA 0.34 TCGA-DA-A1I1-06 1 247712418 247712418 C T GCSAML 5'UTR 0.21 TCGA-DA-A1I1-06 1 248004429 248004429 G A OR11L1 Missense_Mutation p.S257F 0.30 tolerated(0.11) benign(0.294) TCGA-DA-A1I1-06 1 248004878 248004878 G C OR11L1 Silent p.L107L 0.37 TCGA-DA-A1I1-06 1 26885418 26885418 C T RPS6KA1 Missense_Mutation p.S411L 0.34 tolerated(0.16) benign(0.044) TCGA-DA-A1I1-06 1 29533276 29533276 G A MECR Missense_Mutation p.P183L 0.30 deleterious(0) possibly_damaging(0.511) TCGA-DA-A1I1-06 1 32207322 32207322 G A BAI2 Silent p.F530F 0.11 TCGA-DA-A1I1-06 1 43777724 43777724 C T TIE1 Missense_Mutation p.R518C 0.15 tolerated(0.19) benign(0.002) TCGA-DA-A1I1-06 1 47400182 47400182 C T CYP4A11 Silent p.L280L 0.35 TCGA-DA-A1I1-06 1 47611885 47611885 C T CYP4A22 Intron 0.43 TCGA-DA-A1I1-06 1 53544457 53544457 C T PODN Silent p.A473A 0.38 TCGA-DA-A1I1-06 1 57169985 57169985 G A PRKAA2 Missense_Mutation p.S377N 0.28 tolerated(0.16) benign(0.196) TCGA-DA-A1I1-06 1 57476912 57476912 G A DAB1 Missense_Mutation p.S493F 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-DA-A1I1-06 1 62675553 62675553 G A L1TD1 Silent p.E369E 0.44 TCGA-DA-A1I1-06 1 66062252 66062252 G A LEPR Silent p.E275E 0.55 TCGA-DA-A1I1-06 1 67559025 67559025 C T C1orf141 Missense_Mutation p.G289D 0.22 tolerated(0.39) benign(0.001) TCGA-DA-A1I1-06 1 68173378 68173378 A T GNG12 5'UTR 0.48 TCGA-DA-A1I1-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.13 tolerated(0.27) benign(0.035) TCGA-DA-A1I1-06 1 94480120 94480120 C T ABCA4 Silent p.L1813L 0.46 TCGA-DA-A1I1-06 1 97658661 97658661 C T DPYD Silent p.G862G 0.33 TCGA-DA-A1I1-06 20 1918302 1918302 C T SIRPA 3'UTR 0.33 TCGA-DA-A1I1-06 20 1961292 1961292 C T PDYN Missense_Mutation p.D148N 0.22 tolerated(0.26) benign(0.073) TCGA-DA-A1I1-06 20 19677497 19677497 C T SLC24A3 Silent p.F516F 0.22 TCGA-DA-A1I1-06 20 264671 264671 G A C20orf96 Missense_Mutation p.P80L 0.26 tolerated(0.11) benign(0.26) TCGA-DA-A1I1-06 20 29960927 29960927 G A DEFB118 Missense_Mutation p.G109E 0.27 tolerated(1) benign(0.002) TCGA-DA-A1I1-06 20 31761933 31761933 C T BPIFA2 Silent p.I117I 0.20 TCGA-DA-A1I1-06 20 31975170 31975170 G A CDK5RAP1 Silent p.V238V 0.27 TCGA-DA-A1I1-06 20 33842281 33842281 G A MMP24 Missense_Mutation p.E181K 0.28 tolerated(0.23) benign(0.432) TCGA-DA-A1I1-06 20 33875213 33875213 G A FAM83C Missense_Mutation p.R457W 0.31 tolerated_low_confidence(0.05) benign(0.001) TCGA-DA-A1I1-06 20 40080585 40080585 C T CHD6 Missense_Mutation p.R1135H 0.33 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 20 40790031 40790031 C T PTPRT Missense_Mutation p.M881I 0.27 deleterious(0) benign(0.109) TCGA-DA-A1I1-06 20 42331389 42331389 G A MYBL2 Missense_Mutation p.G404D 0.25 deleterious(0.03) possibly_damaging(0.611) TCGA-DA-A1I1-06 20 47853027 47853027 A G DDX27 Missense_Mutation p.K587R 0.65 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1I1-06 20 48273116 48273116 A T B4GALT5 Missense_Mutation p.V80E 0.09 tolerated(0.07) benign(0.002) TCGA-DA-A1I1-06 20 48760138 48760138 A C TMEM189-UBE2V1 Missense_Mutation p.C48G 0.07 deleterious_low_confidence(0) benign(0.014) TCGA-DA-A1I1-06 20 60847181 60847181 G A OSBPL2 Missense_Mutation p.E87K 0.30 deleterious(0) probably_damaging(0.961) TCGA-DA-A1I1-06 20 61987436 61987436 C T CHRNA4 Missense_Mutation p.E92K 0.27 tolerated(0.46) possibly_damaging(0.504) TCGA-DA-A1I1-06 20 62608326 62608326 G A SAMD10 Missense_Mutation p.T148I 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I1-06 20 62680639 62680639 G A SOX18 Silent p.R77R 0.31 TCGA-DA-A1I1-06 21 10944706 10944706 G A TPTE Silent p.Y176Y 0.09 TCGA-DA-A1I1-06 21 10971323 10971323 C T TPTE Missense_Mutation p.G12R 0.16 tolerated_low_confidence(0.13) benign(0.189) TCGA-DA-A1I1-06 21 19632525 19632525 C T CHODL Missense_Mutation p.P186S 0.19 tolerated(0.14) benign(0.018) TCGA-DA-A1I1-06 21 19642265 19642265 C T TMPRSS15 3'UTR 0.27 TCGA-DA-A1I1-06 21 27938585 27938585 G A CYYR1 Missense_Mutation p.S59L 0.24 deleterious(0.05) probably_damaging(0.979) TCGA-DA-A1I1-06 21 40783685 40783685 C T LCA5L Missense_Mutation p.R340Q 0.16 deleterious(0.04) possibly_damaging(0.64) TCGA-DA-A1I1-06 21 47627360 47627360 G A LSS Silent p.L483L 0.28 TCGA-DA-A1I1-06 22 17690364 17690364 G A CECR1 Silent p.I68I 0.39 TCGA-DA-A1I1-06 22 19119841 19119841 G A TSSK2 Missense_Mutation p.R310Q 0.32 tolerated_low_confidence(0.32) benign(0.002) TCGA-DA-A1I1-06 22 29533586 29533586 C T KREMEN1 Silent p.V296V 0.33 TCGA-DA-A1I1-06 22 40718916 40718916 C G TNRC6B Missense_Mutation p.R1725G 0.33 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I1-06 22 44112819 44112819 G A EFCAB6 Missense_Mutation p.S264F 0.27 tolerated(0.1) benign(0.008) TCGA-DA-A1I1-06 22 44579252 44579252 G A PARVG Missense_Mutation p.G15R 0.41 tolerated(0.52) benign(0.001) TCGA-DA-A1I1-06 2 109382770 109382770 G A RANBP2 Silent p.Q1925Q 0.40 TCGA-DA-A1I1-06 2 112942804 112942804 C T FBLN7 Missense_Mutation p.P279S 0.32 tolerated(0.07) benign(0.005) TCGA-DA-A1I1-06 2 113590272 113590272 G A IL1B Missense_Mutation p.L145F 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-DA-A1I1-06 2 136570035 136570035 C T LCT Silent p.R733R 0.20 TCGA-DA-A1I1-06 2 152422239 152422239 C T NEB Missense_Mutation p.M6084I 0.42 benign(0.02) TCGA-DA-A1I1-06 2 152426609 152426609 C T NEB Missense_Mutation p.E5806K 0.25 benign(0.042) TCGA-DA-A1I1-06 2 158272256 158272256 C T CYTIP Missense_Mutation p.R338Q 0.48 tolerated(0.06) probably_damaging(0.997) TCGA-DA-A1I1-06 2 160193466 160193466 G A BAZ2B Missense_Mutation p.S1928L 0.16 possibly_damaging(0.901) TCGA-DA-A1I1-06 2 166758416 166758416 C A TTC21B Missense_Mutation p.R858L 0.11 tolerated(0.9) benign(0.202) TCGA-DA-A1I1-06 2 167060918 167060918 C T SCN9A Missense_Mutation p.M1474I 0.34 deleterious(0.01) benign(0.209) TCGA-DA-A1I1-06 2 179425768 179425768 C T TTN Missense_Mutation p.R28364Q 0.37 TCGA-DA-A1I1-06 2 179454318 179454318 A G TTN Missense_Mutation p.S20712P 0.39 TCGA-DA-A1I1-06 2 179522852 179522852 C T TTN Missense_Mutation p.E12582K 0.41 TCGA-DA-A1I1-06 2 179611971 179611971 G A TTN Intron 0.23 TCGA-DA-A1I1-06 2 179612389 179612389 C T TTN Intron 0.36 TCGA-DA-A1I1-06 2 189875503 189875503 C T COL3A1 Nonsense_Mutation p.Q1381* 0.25 TCGA-DA-A1I1-06 2 201507515 201507515 C T AOX1 Silent p.S946S 0.37 TCGA-DA-A1I1-06 2 207173257 207173257 C T ZDBF2 Silent p.I1335I 0.30 TCGA-DA-A1I1-06 2 21230295 21230295 C T APOB Missense_Mutation p.D3149N 0.40 benign(0.021) TCGA-DA-A1I1-06 2 212578341 212578341 G A ERBB4 Missense_Mutation p.R306C 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 2 215910672 215910672 G A ABCA12 Missense_Mutation p.S254L 0.33 deleterious(0.01) benign(0.424) TCGA-DA-A1I1-06 2 217526682 217526682 C T IGFBP2 Silent p.I258I 0.35 TCGA-DA-A1I1-06 2 219229429 219229429 G T C2orf62 Nonsense_Mutation p.E237* 0.23 TCGA-DA-A1I1-06 2 220087135 220087135 G A ATG9A Missense_Mutation p.S629F 0.12 deleterious(0.04) possibly_damaging(0.467) TCGA-DA-A1I1-06 2 241078538 241078538 C T OTOS 3'UTR 0.53 TCGA-DA-A1I1-06 2 242203964 242203964 G A HDLBP Missense_Mutation p.P45S 0.45 deleterious(0.01) probably_damaging(0.962) TCGA-DA-A1I1-06 2 31754493 31754493 G A AL133247.2 Intron 0.25 TCGA-DA-A1I1-06 2 33589287 33589287 G A LTBP1 Missense_Mutation p.M1468I 0.41 tolerated(1) benign(0.002) TCGA-DA-A1I1-06 2 38179110 38179110 C T RMDN2 Missense_Mutation p.P251L 0.13 tolerated(0.06) probably_damaging(0.958) TCGA-DA-A1I1-06 2 39050179 39050179 G A DHX57 Missense_Mutation p.P1083S 0.42 tolerated(0.67) probably_damaging(0.953) TCGA-DA-A1I1-06 2 56108806 56108806 C T EFEMP1 Missense_Mutation p.R194Q 0.30 tolerated(0.42) probably_damaging(0.999) TCGA-DA-A1I1-06 2 71187172 71187172 C T ATP6V1B1 Silent p.I183I 0.15 TCGA-DA-A1I1-06 2 79349161 79349161 C T REG1A Silent p.T77T 0.48 TCGA-DA-A1I1-06 2 89399359 89399359 C T IGKV1-16 Missense_Mutation p.S115N 0.21 tolerated(0.23) benign(0.007) TCGA-DA-A1I1-06 2 99012478 99012478 C T CNGA3 Missense_Mutation p.S282F 0.33 deleterious(0.03) benign(0.192) TCGA-DA-A1I1-06 3 102171836 102171836 C T ZPLD1 Silent p.F76F 0.44 TCGA-DA-A1I1-06 3 108149770 108149770 C T MYH15 Splice_Site p.X1094_splice 0.48 TCGA-DA-A1I1-06 3 111604058 111604058 G A PHLDB2 Silent p.A378A 0.41 TCGA-DA-A1I1-06 3 111888046 111888046 C T SLC9C1 Missense_Mutation p.E1017K 0.25 tolerated(0.05) benign(0.139) TCGA-DA-A1I1-06 3 123419461 123419461 C T MYLK Missense_Mutation p.D952N 0.15 deleterious(0.02) benign(0.196) TCGA-DA-A1I1-06 3 126154442 126154442 G A CCDC37 Missense_Mutation p.E557K 0.23 deleterious(0) probably_damaging(0.992) TCGA-DA-A1I1-06 3 129150211 129150211 G A MBD4 3'UTR 0.37 TCGA-DA-A1I1-06 3 138174110 138174110 C T ESYT3 Silent p.I148I 0.49 TCGA-DA-A1I1-06 3 149220612 149220612 C T TM4SF4 3'UTR 0.31 TCGA-DA-A1I1-06 3 160804147 160804147 G A B3GALNT1 Silent p.S132S 0.40 TCGA-DA-A1I1-06 3 161221562 161221562 G A OTOL1 Silent p.Q422Q 0.16 TCGA-DA-A1I1-06 3 16358264 16358264 C T RFTN1 3'UTR 0.22 TCGA-DA-A1I1-06 3 16358265 16358265 C T RFTN1 3'UTR 0.21 TCGA-DA-A1I1-06 3 167083704 167083704 C T ZBBX Missense_Mutation p.M81I 0.18 tolerated(0.36) benign(0.002) TCGA-DA-A1I1-06 3 183056698 183056698 G A MCF2L2 Missense_Mutation p.P126S 0.13 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I1-06 3 183699584 183699584 C T ABCC5 Missense_Mutation p.E360K 0.44 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 3 30875357 30875357 C T GADL1 Silent p.V346V 0.27 TCGA-DA-A1I1-06 3 39229856 39229856 C T XIRP1 Missense_Mutation p.E361K 0.38 deleterious(0.01) benign(0.185) TCGA-DA-A1I1-06 3 432728 432728 G A CHL1 Missense_Mutation p.G893R 0.37 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I1-06 3 47957775 47957775 C T MAP4 Missense_Mutation p.M514I 0.41 tolerated(0.08) benign(0.017) TCGA-DA-A1I1-06 3 49053216 49053216 C T WDR6 3'UTR 0.26 TCGA-DA-A1I1-06 3 49662727 49662727 C T BSN Missense_Mutation p.P182S 0.19 unknown(0) TCGA-DA-A1I1-06 3 52256890 52256890 C T TLR9 Missense_Mutation p.R635Q 0.46 tolerated(0.46) probably_damaging(0.939) TCGA-DA-A1I1-06 3 52263030 52263030 G A TWF2 3'UTR 0.21 TCGA-DA-A1I1-06 3 54930738 54930738 G A CACNA2D3 Intron 0.39 TCGA-DA-A1I1-06 3 97852270 97852270 C T OR5H1 Silent p.A243A 0.34 TCGA-DA-A1I1-06 4 100205881 100205881 C T ADH1A Silent p.L113L 0.27 TCGA-DA-A1I1-06 4 100235150 100235150 C T ADH1B Missense_Mutation p.R219K 0.30 deleterious(0.05) benign(0.04) TCGA-DA-A1I1-06 4 100503146 100503146 G A MTTP Missense_Mutation p.G49E 0.37 tolerated(0.22) benign(0.021) TCGA-DA-A1I1-06 4 106863484 106863484 G A NPNT Missense_Mutation p.E292K 0.33 tolerated(0.35) benign(0.008) TCGA-DA-A1I1-06 4 11401010 11401010 A T HS3ST1 Missense_Mutation p.F207Y 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 4 115792005 115792005 C T NDST4 Silent p.L546L 0.34 TCGA-DA-A1I1-06 4 123797575 123797575 C T FGF2 Missense_Mutation p.A226V 0.38 deleterious(0) possibly_damaging(0.9) TCGA-DA-A1I1-06 4 129099679 129099679 C T LARP1B Missense_Mutation p.S593F 0.27 deleterious(0) possibly_damaging(0.764) TCGA-DA-A1I1-06 4 147204355 147204355 G A SLC10A7 Missense_Mutation p.S279F 0.43 deleterious(0) probably_damaging(0.94) TCGA-DA-A1I1-06 4 149357508 149357508 C T NR3C2 Missense_Mutation p.G169R 0.36 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-DA-A1I1-06 4 153692199 153692199 G A TIGD4 5'UTR 0.32 TCGA-DA-A1I1-06 4 15444496 15444496 G A C1QTNF7 3'UTR 0.41 TCGA-DA-A1I1-06 4 154649400 154649400 G A RNF175 Silent p.L120L 0.35 TCGA-DA-A1I1-06 4 156629404 156629404 G A GUCY1A3 Missense_Mutation p.E112K 0.31 deleterious(0.04) benign(0.177) TCGA-DA-A1I1-06 4 183522260 183522260 C T TENM3 Missense_Mutation p.S232F 0.37 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-DA-A1I1-06 4 185552963 185552963 G A CASP3 Missense_Mutation p.R147C 0.24 tolerated(0.24) benign(0.002) TCGA-DA-A1I1-06 4 2272433 2272433 G A ZFYVE28 3'UTR 0.35 TCGA-DA-A1I1-06 4 248180 248180 C T ZNF876P RNA 0.28 TCGA-DA-A1I1-06 4 40351124 40351124 C T CHRNA9 Silent p.F197F 0.31 TCGA-DA-A1I1-06 4 47408913 47408913 G A GABRB1 Silent p.E350E 0.38 TCGA-DA-A1I1-06 4 54966537 54966537 C A GSX2 Nonsense_Mutation p.S9* 0.38 TCGA-DA-A1I1-06 4 56284107 56284107 G C TMEM165 Missense_Mutation p.W249C 0.20 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I1-06 4 76788533 76788533 C T PPEF2 Silent p.R563R 0.37 TCGA-DA-A1I1-06 4 77065565 77065565 G A NUP54 Silent p.A43A 0.31 TCGA-DA-A1I1-06 4 84516026 84516026 G A AGPAT9 Missense_Mutation p.G256E 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 4 91229571 91229571 C T CCSER1 Missense_Mutation p.P46S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1I1-06 4 95239087 95239087 C T HPGDS Missense_Mutation p.E55K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1I1-06 4 956369 956369 C - DGKQ Frame_Shift_Del p.A690Rfs*53 0.15 TCGA-DA-A1I1-06 5 101597671 101597671 C T SLCO4C1 Nonsense_Mutation p.W322* 0.20 TCGA-DA-A1I1-06 5 101811446 101811446 C T SLCO6A1 Missense_Mutation p.G285E 0.14 deleterious(0) probably_damaging(0.95) TCGA-DA-A1I1-06 5 120021835 120021835 G A PRR16 Missense_Mutation p.V93I 0.52 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DA-A1I1-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.19 tolerated(0.09) possibly_damaging(0.574) TCGA-DA-A1I1-06 5 1239571 1239571 A T SLC6A18 Missense_Mutation p.I247F 0.22 deleterious(0.04) benign(0.071) TCGA-DA-A1I1-06 5 128320843 128320843 G A SLC27A6 Missense_Mutation p.E167K 0.36 tolerated(0.08) benign(0.064) TCGA-DA-A1I1-06 5 138761999 138761999 G A DNAJC18 Missense_Mutation p.R141C 0.16 deleterious(0) probably_damaging(0.916) TCGA-DA-A1I1-06 5 140181133 140181133 C T PCDHA3 Silent p.F117F 0.23 TCGA-DA-A1I1-06 5 140181796 140181796 C T PCDHA3 Silent p.L338L 0.45 TCGA-DA-A1I1-06 5 140188595 140188595 C T PCDHA4 Missense_Mutation p.S608L 0.32 tolerated_low_confidence(0.05) possibly_damaging(0.577) TCGA-DA-A1I1-06 5 140203025 140203025 G A PCDHA5 Silent p.L555L 0.37 TCGA-DA-A1I1-06 5 140208509 140208509 C T PCDHA6 Missense_Mutation p.S278L 0.17 tolerated_low_confidence(0.37) benign(0.016) TCGA-DA-A1I1-06 5 140503169 140503169 T G PCDHB4 Missense_Mutation p.V530G 0.19 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DA-A1I1-06 5 140537261 140537261 C T PCDHB17 Missense_Mutation p.S562L 0.44 tolerated_low_confidence(0.13) benign(0.018) TCGA-DA-A1I1-06 5 140625542 140625542 G A PCDHB15 Silent p.E132E 0.42 TCGA-DA-A1I1-06 5 140730862 140730862 C T PCDHGB1 Silent p.F345F 0.29 TCGA-DA-A1I1-06 5 140750382 140750382 G A PCDHGB3 Missense_Mutation p.E141K 0.42 tolerated(0.57) benign(0.303) TCGA-DA-A1I1-06 5 145252393 145252393 C T GRXCR2 Missense_Mutation p.E47K 0.46 tolerated(0.57) possibly_damaging(0.447) TCGA-DA-A1I1-06 5 149240447 149240447 C T PDE6A 3'UTR 0.40 TCGA-DA-A1I1-06 5 154185511 154185511 C T LARP1 Nonsense_Mutation p.Q796* 0.23 TCGA-DA-A1I1-06 5 156721794 156721794 T G CYFIP2 Intron 0.35 TCGA-DA-A1I1-06 5 156917439 156917439 C A ADAM19 Missense_Mutation p.V707L 0.15 tolerated(0.44) benign(0.027) TCGA-DA-A1I1-06 5 157065567 157065567 G A SOX30 Silent p.S517S 0.21 TCGA-DA-A1I1-06 5 157065568 157065568 G A SOX30 Missense_Mutation p.S517F 0.21 deleterious(0) benign(0.312) TCGA-DA-A1I1-06 5 160758087 160758087 C T GABRB2 Missense_Mutation p.E294K 0.42 tolerated(0.06) probably_damaging(0.99) TCGA-DA-A1I1-06 5 172341851 172341851 C T ERGIC1 Intron 0.33 TCGA-DA-A1I1-06 5 176083809 176083809 C T TSPAN17 Missense_Mutation p.L250F 0.18 tolerated(0.14) probably_damaging(0.978) TCGA-DA-A1I1-06 5 178417597 178417597 G A GRM6 Silent p.I336I 0.22 TCGA-DA-A1I1-06 5 180335918 180335918 G A BTNL8 Missense_Mutation p.E128K 0.21 deleterious(0.02) possibly_damaging(0.594) TCGA-DA-A1I1-06 5 40843311 40843311 C T CARD6 Missense_Mutation p.S114L 0.47 deleterious(0.04) benign(0.048) TCGA-DA-A1I1-06 5 41038885 41038885 G A MROH2B Nonsense_Mutation p.Q723* 0.51 TCGA-DA-A1I1-06 5 41160404 41160404 C T C6 Silent p.R508R 0.14 TCGA-DA-A1I1-06 5 52216260 52216260 C T ITGA1 Nonsense_Mutation p.R752* 0.32 TCGA-DA-A1I1-06 5 75893356 75893356 C T IQGAP2 Missense_Mutation p.P334S 0.35 tolerated(0.12) possibly_damaging(0.607) TCGA-DA-A1I1-06 5 79029915 79029915 G A CMYA5 Missense_Mutation p.G1776E 0.41 benign(0.026) TCGA-DA-A1I1-06 5 80366339 80366339 G A RASGRF2 Missense_Mutation p.R191Q 0.17 deleterious(0.03) possibly_damaging(0.626) TCGA-DA-A1I1-06 5 83362369 83362369 C T EDIL3 Silent p.R236R 0.47 TCGA-DA-A1I1-06 5 98228321 98228321 G A CHD1 Silent p.R696R 0.33 TCGA-DA-A1I1-06 6 10928651 10928651 C T SYCP2L Missense_Mutation p.P486S 0.39 tolerated(0.69) benign(0.007) TCGA-DA-A1I1-06 6 131520642 131520642 G A AKAP7 Missense_Mutation p.G211R 0.62 deleterious(0.04) probably_damaging(1) TCGA-DA-A1I1-06 6 132891606 132891606 G A TAAR6 Missense_Mutation p.G49E 0.50 deleterious(0.01) possibly_damaging(0.658) TCGA-DA-A1I1-06 6 134312437 134312437 C T SLC2A12 Silent p.V570V 0.53 TCGA-DA-A1I1-06 6 151939338 151939338 C T CCDC170 3'UTR 0.52 TCGA-DA-A1I1-06 6 167570453 167570453 G A GPR31 Silent p.F289F 0.35 TCGA-DA-A1I1-06 6 26240876 26240876 G A HIST1H4F Missense_Mutation p.E75K 0.30 deleterious(0.05) benign(0.44) TCGA-DA-A1I1-06 6 26413718 26413718 C T BTN3A1 Missense_Mutation p.P447L 0.40 tolerated(0.93) possibly_damaging(0.886) TCGA-DA-A1I1-06 6 26413719 26413719 C T BTN3A1 Silent p.P447P 0.40 TCGA-DA-A1I1-06 6 27925712 27925712 G A OR2B6 Missense_Mutation p.E232K 0.33 tolerated(0.18) benign(0.077) TCGA-DA-A1I1-06 6 28540105 28540105 T C SCAND3 Silent p.E1187E 0.53 TCGA-DA-A1I1-06 6 30079499 30079499 G A TRIM31 Nonsense_Mutation p.Q147* 0.33 TCGA-DA-A1I1-06 6 31431476 31431476 G A HCP5 RNA 0.26 TCGA-DA-A1I1-06 6 31555067 31555067 C T LST1 5'UTR 0.36 TCGA-DA-A1I1-06 6 31915741 31915741 G A CFB Silent p.K762K 0.38 TCGA-DA-A1I1-06 6 31926801 31926801 C T NELFE 5'UTR 0.28 TCGA-DA-A1I1-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.43 TCGA-DA-A1I1-06 6 32304392 32304392 G A C6orf10 Missense_Mutation p.P144S 0.32 deleterious(0.01) benign(0.067) TCGA-DA-A1I1-06 6 38810452 38810452 C T DNAH8 Missense_Mutation p.P1323S 0.35 probably_damaging(0.913) TCGA-DA-A1I1-06 6 38875892 38875892 C T DNAH8 Missense_Mutation p.S2953F 0.43 probably_damaging(1) TCGA-DA-A1I1-06 6 40400396 40400396 C T LRFN2 Missense_Mutation p.D153N 0.34 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I1-06 6 46216633 46216633 C T RCAN2 Missense_Mutation p.E76K 0.14 tolerated(0.26) benign(0.328) TCGA-DA-A1I1-06 6 46659662 46659662 C T TDRD6 Missense_Mutation p.P1266L 0.33 tolerated(0.11) benign(0.003) TCGA-DA-A1I1-06 6 54254602 54254602 C T TINAG Missense_Mutation p.S437F 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 6 6305692 6305692 C T F13A1 Missense_Mutation p.E71K 0.37 tolerated(0.93) benign(0.052) TCGA-DA-A1I1-06 6 72968727 72968727 C T RIMS1 Missense_Mutation p.S989F 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A1I1-06 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 6 7585285 7585285 C T DSP Missense_Mutation p.S2597F 0.33 benign(0.1) TCGA-DA-A1I1-06 6 76023724 76023724 T C FILIP1 Silent p.R608R 0.38 TCGA-DA-A1I1-06 6 84765131 84765131 C T MRAP2 Missense_Mutation p.P32S 0.43 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I1-06 6 90390347 90390347 G A MDN1 Missense_Mutation p.P4076S 0.57 benign(0.004) TCGA-DA-A1I1-06 6 90604254 90604254 A G GJA10 Missense_Mutation p.K23E 0.48 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 6 9897184 9897184 C T OFCC1 Intron 0.37 TCGA-DA-A1I1-06 7 100404068 100404068 G A EPHB4 Missense_Mutation p.P820S 0.15 deleterious(0) probably_damaging(0.982) TCGA-DA-A1I1-06 7 101840249 101840249 C T CUX1 Nonsense_Mutation p.Q531* 0.16 TCGA-DA-A1I1-06 7 103014871 103014871 G C SLC26A5 Missense_Mutation p.A737G 0.21 deleterious_low_confidence(0.04) benign(0.086) TCGA-DA-A1I1-06 7 103048315 103048315 G A SLC26A5 Missense_Mutation p.P291S 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 7 103207091 103207091 C T RELN Silent p.A1568A 0.14 TCGA-DA-A1I1-06 7 115590988 115590988 C T TFEC Missense_Mutation p.R152K 0.31 deleterious(0) probably_damaging(0.969) TCGA-DA-A1I1-06 7 120767263 120767263 C T CPED1 Silent p.S418S 0.15 TCGA-DA-A1I1-06 7 120907287 120907287 C T CPED1 Silent p.I884I 0.14 TCGA-DA-A1I1-06 7 127235784 127235784 C T FSCN3 Missense_Mutation p.H190Y 0.44 tolerated(0.09) probably_damaging(0.976) TCGA-DA-A1I1-06 7 141747655 141747655 G A MGAM Missense_Mutation p.D857N 0.19 deleterious(0) probably_damaging(0.956) TCGA-DA-A1I1-06 7 142568069 142568069 C G EPHB6 Missense_Mutation p.R904G 0.22 tolerated(0.17) benign(0.152) TCGA-DA-A1I1-06 7 143039050 143039050 C T CLCN1 Silent p.S537S 0.31 TCGA-DA-A1I1-06 7 15427065 15427065 T C AGMO Missense_Mutation p.K308R 0.21 deleterious(0) probably_damaging(0.986) TCGA-DA-A1I1-06 7 158672385 158672385 G A WDR60 Missense_Mutation p.G195E 0.57 tolerated(0.09) benign(0.129) TCGA-DA-A1I1-06 7 27285648 27285648 C T EVX1 Silent p.H276H 0.25 TCGA-DA-A1I1-06 7 2951870 2951870 C T CARD11 Missense_Mutation p.R1027Q 0.21 tolerated(0.07) possibly_damaging(0.807) TCGA-DA-A1I1-06 7 38500904 38500904 G A AMPH Silent p.I332I 0.36 TCGA-DA-A1I1-06 7 48314058 48314058 C T ABCA13 Missense_Mutation p.H1599Y 0.44 benign(0.01) TCGA-DA-A1I1-06 7 48547545 48547545 G A ABCA13 Missense_Mutation p.S4475N 0.17 benign(0.442) TCGA-DA-A1I1-06 7 5780816 5780816 C T RNF216 Missense_Mutation p.E278K 0.24 tolerated(0.08) benign(0.423) TCGA-DA-A1I1-06 7 6064348 6064348 C T EIF2AK1 Missense_Mutation p.D617N 0.32 tolerated(0.1) unknown(0) TCGA-DA-A1I1-06 7 66532274 66532274 C T TYW1 Silent p.S386S 0.22 TCGA-DA-A1I1-06 7 73245737 73245737 C T CLDN4 Missense_Mutation p.S69L 0.35 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I1-06 7 7472319 7472319 G A COL28A1 Missense_Mutation p.P625S 0.35 tolerated(0.43) benign(0.092) TCGA-DA-A1I1-06 7 7646670 7646670 A G MIOS Missense_Mutation p.M859V 0.48 tolerated(0.45) benign(0.153) TCGA-DA-A1I1-06 7 81381541 81381541 C T HGF Missense_Mutation p.E174K 0.35 tolerated(0.08) possibly_damaging(0.883) TCGA-DA-A1I1-06 7 82457235 82457235 G A PCLO Missense_Mutation p.P4766L 0.32 unknown(0) TCGA-DA-A1I1-06 7 82583769 82583769 G A PCLO Missense_Mutation p.S2167L 0.24 unknown(0) TCGA-DA-A1I1-06 7 86415993 86415993 C T GRM3 Silent p.F295F 0.23 TCGA-DA-A1I1-06 7 92098132 92098132 C T ERVW-1 Missense_Mutation p.E522K 0.44 deleterious_low_confidence(0) benign(0.301) TCGA-DA-A1I1-06 8 10583598 10583598 G A SOX7 Missense_Mutation p.P325S 0.29 tolerated(0.25) benign(0.002) TCGA-DA-A1I1-06 8 106815096 106815096 G A ZFPM2 Missense_Mutation p.G929E 0.33 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-DA-A1I1-06 8 134108585 134108585 G A TG Missense_Mutation p.D2514N 0.38 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I1-06 8 13948061 13948061 C T SGCZ Missense_Mutation p.R277Q 0.36 tolerated(0.43) benign(0.011) TCGA-DA-A1I1-06 8 140630623 140630623 C T KCNK9 Missense_Mutation p.E335K 0.34 tolerated(0.25) benign(0.368) TCGA-DA-A1I1-06 8 144943357 144943357 G A EPPK1 Silent p.L1355L 0.47 TCGA-DA-A1I1-06 8 145622104 145622104 G A CPSF1 Missense_Mutation p.P878L 0.22 tolerated(0.12) benign(0.002) TCGA-DA-A1I1-06 8 145622105 145622105 G A CPSF1 Missense_Mutation p.P878S 0.22 tolerated(0.32) benign(0.001) TCGA-DA-A1I1-06 8 18622975 18622975 G A PSD3 Missense_Mutation p.S719F 0.25 deleterious(0) benign(0.351) TCGA-DA-A1I1-06 8 19250940 19250940 C T SH2D4A Missense_Mutation p.S387L 0.35 tolerated(0.08) benign(0.248) TCGA-DA-A1I1-06 8 24349461 24349461 G A ADAM7 Missense_Mutation p.D468N 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 8 25708165 25708165 C T EBF2 Silent p.R547R 0.29 TCGA-DA-A1I1-06 8 26505265 26505265 C T DPYSL2 Silent p.V410V 0.37 TCGA-DA-A1I1-06 8 3256922 3256922 G A CSMD1 Missense_Mutation p.T799I 0.28 possibly_damaging(0.69) TCGA-DA-A1I1-06 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.36 tolerated(0.3) benign(0) TCGA-DA-A1I1-06 8 69104700 69104700 C T PREX2 Missense_Mutation p.S1515L 0.50 deleterious(0) probably_damaging(0.978) TCGA-DA-A1I1-06 8 69621301 69621301 C T C8orf34 Silent p.I438I 0.21 TCGA-DA-A1I1-06 8 73850152 73850152 C T KCNB2 Silent p.S854S 0.38 TCGA-DA-A1I1-06 8 74464238 74464238 A G STAU2 Intron 0.32 TCGA-DA-A1I1-06 8 77895481 77895481 G A PEX2 3'UTR 0.30 TCGA-DA-A1I1-06 8 8654904 8654904 G A MFHAS1 Silent p.P1032P 0.45 TCGA-DA-A1I1-06 8 90937327 90937327 C A OSGIN2 Missense_Mutation p.T406N 0.38 tolerated(0.23) benign(0.038) TCGA-DA-A1I1-06 9 105767612 105767612 A T CYLC2 Missense_Mutation p.E233D 0.41 tolerated(0.07) unknown(0) TCGA-DA-A1I1-06 9 108536291 108536291 C T TMEM38B Missense_Mutation p.S269L 0.59 deleterious(0.02) possibly_damaging(0.521) TCGA-DA-A1I1-06 9 125512978 125512978 C G OR1L6 Silent p.P284P 0.17 TCGA-DA-A1I1-06 9 127912094 127912094 G A PPP6C Missense_Mutation p.P296L 0.58 deleterious(0) probably_damaging(1) TCGA-DA-A1I1-06 9 128094815 128094815 C T GAPVD1 Missense_Mutation p.P779S 0.53 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DA-A1I1-06 9 130279240 130279240 A C FAM129B Missense_Mutation p.V290G 0.56 deleterious(0) benign(0.127) TCGA-DA-A1I1-06 9 21971076 21971101 CAGCGTGTCCAGGAAGCCCTCCCGGG - CDKN2A Frame_Shift_Del p.A86Gfs*25 0.44 TCGA-DA-A1I1-06 9 37719095 37719095 G A FRMPD1 Silent p.E146E 0.50 TCGA-DA-A1I1-06 9 37740765 37740765 C T FRMPD1 Missense_Mutation p.P747L 0.45 tolerated(0.14) benign(0.008) TCGA-DA-A1I1-06 9 37740766 37740766 C T FRMPD1 Silent p.P747P 0.45 TCGA-DA-A1I1-06 9 79843091 79843091 A G VPS13A Silent p.R502R 0.36 TCGA-DA-A1I1-06 9 97062697 97062697 G A ZNF169 Missense_Mutation p.G286E 0.48 deleterious(0.03) probably_damaging(0.957) TCGA-DA-A1I1-06 9 97062698 97062698 G A ZNF169 Silent p.G286G 0.51 TCGA-DA-A1I1-06 X 110951568 110951568 C T ALG13 Nonsense_Mutation p.R233* 0.69 TCGA-DA-A1I1-06 X 11318724 11318724 C T AMELX Intron 0.68 TCGA-DA-A1I1-06 X 114141364 114141364 G A HTR2C Missense_Mutation p.E255K 0.72 tolerated(0.74) benign(0.002) TCGA-DA-A1I1-06 X 123514833 123514833 C A TENM1 Missense_Mutation p.K2584N 0.74 deleterious(0) probably_damaging(0.925) TCGA-DA-A1I1-06 X 151900681 151900681 G A MAGEA12 Silent p.S40S 0.82 TCGA-DA-A1I1-06 X 153069985 153069985 G A PDZD4 Missense_Mutation p.P378L 0.77 tolerated(0.19) benign(0.001) TCGA-DA-A1I1-06 X 154159776 154159776 C T F8 Silent p.Q763Q 0.65 TCGA-DA-A1I1-06 X 20062506 20062506 G A MAP7D2 Silent p.A285A 0.73 TCGA-DA-A1I1-06 X 48419387 48419387 C T TBC1D25 3'UTR 0.79 TCGA-DA-A1I1-06 X 7243496 7243496 C T STS Missense_Mutation p.P405S 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I2-06 10 12259431 12259431 G T CDC123 Missense_Mutation p.K135N 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1I2-06 10 124399762 124399762 C T DMBT1 Silent p.D2254D 0.34 TCGA-DA-A1I2-06 10 129907335 129907335 C T MKI67 Silent p.K923K 0.43 TCGA-DA-A1I2-06 10 134909255 134909255 G A GPR123 Intron 0.24 TCGA-DA-A1I2-06 10 34663808 34663808 C T PARD3 Silent p.R554R 0.30 TCGA-DA-A1I2-06 10 54053573 54053573 C A PRKG1 Silent p.P658P 0.32 TCGA-DA-A1I2-06 10 61831219 61831219 T C ANK3 Silent p.Q3140Q 0.39 TCGA-DA-A1I2-06 10 70406332 70406332 T C TET1 Silent p.Y1282Y 0.13 TCGA-DA-A1I2-06 10 73122461 73122461 C T SLC29A3 3'UTR 0.38 TCGA-DA-A1I2-06 10 98287894 98287895 - AT TM9SF3 Frame_Shift_Ins p.Y479Ifs*7 0.22 TCGA-DA-A1I2-06 11 118404132 118404132 C T TMEM25 Intron 0.16 TCGA-DA-A1I2-06 11 130275831 130275831 C T ADAMTS8 Silent p.L764L 0.59 TCGA-DA-A1I2-06 11 44100295 44100295 C T ACCS Missense_Mutation p.S265F 0.48 deleterious(0) possibly_damaging(0.806) TCGA-DA-A1I2-06 11 49175820 49175820 C T FOLH1 Missense_Mutation p.M616I 0.43 tolerated(0.08) benign(0.001) TCGA-DA-A1I2-06 11 61090509 61090509 G A DDB1 Missense_Mutation p.R327C 0.62 tolerated(0.11) possibly_damaging(0.625) TCGA-DA-A1I2-06 11 62293840 62293840 A T AHNAK Silent p.I2683I 0.23 TCGA-DA-A1I2-06 11 64037604 64037604 G A BAD 3'UTR 0.20 TCGA-DA-A1I2-06 11 70319502 70319502 C T SHANK2 Silent p.T1675T 0.45 TCGA-DA-A1I2-06 11 71939791 71939791 C T INPPL1 Missense_Mutation p.P140S 0.71 tolerated(0.11) benign(0.109) TCGA-DA-A1I2-06 11 74415556 74415556 G A CHRDL2 Silent p.I242I 0.25 TCGA-DA-A1I2-06 12 108090340 108090340 C T PWP1 Missense_Mutation p.P198S 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A1I2-06 12 108090341 108090341 C T PWP1 Missense_Mutation p.P198L 0.36 deleterious(0) probably_damaging(0.97) TCGA-DA-A1I2-06 12 109306352 109306352 C T SVOP Missense_Mutation p.G471S 0.61 tolerated_low_confidence(0.94) benign(0.001) TCGA-DA-A1I2-06 12 111776230 111776230 C T CUX2 Missense_Mutation p.P1113S 0.48 deleterious(0.02) possibly_damaging(0.699) TCGA-DA-A1I2-06 12 113873225 113873225 C T SDSL Silent p.L179L 0.57 TCGA-DA-A1I2-06 12 33579303 33579303 G A SYT10 Silent p.I93I 0.41 TCGA-DA-A1I2-06 12 4848450 4848450 C T GALNT8 Nonsense_Mutation p.R211* 0.40 TCGA-DA-A1I2-06 12 52309043 52309043 G A ACVRL1 Silent p.S269S 0.72 TCGA-DA-A1I2-06 12 53189266 53189266 G A KRT3 Silent p.I187I 0.47 TCGA-DA-A1I2-06 12 55524316 55524316 C T OR9K2 Missense_Mutation p.S255F 0.14 deleterious(0.01) possibly_damaging(0.493) TCGA-DA-A1I2-06 12 56814624 56814624 G A TIMELESS Nonsense_Mutation p.R1028* 0.24 TCGA-DA-A1I2-06 12 56814625 56814625 G A TIMELESS Silent p.I1027I 0.24 TCGA-DA-A1I2-06 12 71016398 71016398 C A PTPRB Missense_Mutation p.R160S 0.55 tolerated_low_confidence(0.09) benign(0.019) TCGA-DA-A1I2-06 12 7559289 7559289 A C CD163L1 Missense_Mutation p.L309R 0.62 deleterious(0) probably_damaging(0.973) TCGA-DA-A1I2-06 12 76739666 76739666 G A BBS10 Missense_Mutation p.T700I 0.49 deleterious(0) possibly_damaging(0.494) TCGA-DA-A1I2-06 13 28130496 28130496 G A LNX2 Missense_Mutation p.P475S 0.41 tolerated(0.06) possibly_damaging(0.788) TCGA-DA-A1I2-06 13 39542604 39542604 C T STOML3 Missense_Mutation p.R195Q 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-DA-A1I2-06 14 100157478 100157478 C T CYP46A1 Silent p.L60L 0.36 TCGA-DA-A1I2-06 14 105677571 105677571 C T BRF1 Silent p.L628L 0.51 TCGA-DA-A1I2-06 14 20389642 20389642 G A OR4K5 Missense_Mutation p.D293N 0.28 deleterious(0.01) benign(0.018) TCGA-DA-A1I2-06 14 21931881 21931881 G A RAB2B Silent p.A136A 0.30 TCGA-DA-A1I2-06 14 21931882 21931882 G A RAB2B Missense_Mutation p.A136V 0.30 tolerated(0.14) benign(0.026) TCGA-DA-A1I2-06 14 23862255 23862255 G A MYH6 Silent p.S1039S 0.32 TCGA-DA-A1I2-06 14 45687484 45687484 C A MIS18BP1 Splice_Site p.X948_splice 0.37 TCGA-DA-A1I2-06 14 89061145 89061145 C T ZC3H14 Intron 0.46 TCGA-DA-A1I2-06 14 90263603 90263603 C T EFCAB11 Missense_Mutation p.G159E 0.15 deleterious(0) probably_damaging(0.988) TCGA-DA-A1I2-06 15 20588496 20588496 C T HERC2P3 RNA 0.50 TCGA-DA-A1I2-06 15 20636465 20636465 C T HERC2P3 RNA 0.74 TCGA-DA-A1I2-06 15 24922213 24922213 C T NPAP1 Missense_Mutation p.S400F 0.15 tolerated(0.27) benign(0.001) TCGA-DA-A1I2-06 15 34649344 34649344 C T NUTM1 Silent p.L1017L 0.27 TCGA-DA-A1I2-06 15 39544718 39544718 G A C15orf54 Missense_Mutation p.G128R 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-DA-A1I2-06 15 39544719 39544719 G A C15orf54 Missense_Mutation p.G128E 0.27 tolerated_low_confidence(0.14) possibly_damaging(0.779) TCGA-DA-A1I2-06 15 41819403 41819403 T C RPAP1 Missense_Mutation p.I570V 0.56 tolerated(0.11) benign(0.018) TCGA-DA-A1I2-06 15 45464403 45464403 C T SHF Missense_Mutation p.E303K 0.35 deleterious(0.03) benign(0.096) TCGA-DA-A1I2-06 15 45470424 45470424 T G SHF Silent p.P128P 0.21 TCGA-DA-A1I2-06 15 50152518 50152518 T A ATP8B4 Missense_Mutation p.K1151I 0.22 deleterious(0.01) benign(0.209) TCGA-DA-A1I2-06 15 89401973 89401973 G A ACAN Missense_Mutation p.E2053K 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-DA-A1I2-06 16 67685655 67685655 G A RLTPR Nonsense_Mutation p.W832* 0.78 TCGA-DA-A1I2-06 17 28789002 28789002 T G CPD Silent p.G1246G 0.66 TCGA-DA-A1I2-06 17 33428002 33428002 C T RAD51D Silent p.Q339Q 0.53 TCGA-DA-A1I2-06 17 39041328 39041328 C T KRT20 Missense_Mutation p.G37E 0.82 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I2-06 17 72436813 72436813 G A GPRC5C Missense_Mutation p.V345I 0.50 tolerated(1) benign(0.024) TCGA-DA-A1I2-06 17 72469802 72469802 C T CD300A Silent p.F56F 0.18 TCGA-DA-A1I2-06 17 76533472 76533472 C T DNAH17 Missense_Mutation p.G923D 0.56 possibly_damaging(0.85) TCGA-DA-A1I2-06 18 29054145 29054145 G A DSG3 Missense_Mutation p.M721I 0.83 tolerated(0.13) benign(0.013) TCGA-DA-A1I2-06 19 10100153 10100153 C T COL5A3 Missense_Mutation p.G680S 0.38 unknown(0) TCGA-DA-A1I2-06 19 11470537 11470537 C T DKFZP761J1410 Missense_Mutation p.P74L 0.34 tolerated(0.46) benign(0.138) TCGA-DA-A1I2-06 19 11832550 11832550 C T ZNF823 Missense_Mutation p.R600K 0.18 tolerated(0.98) possibly_damaging(0.779) TCGA-DA-A1I2-06 19 12638475 12638475 G A ZNF564 Silent p.A149A 0.44 TCGA-DA-A1I2-06 19 13041108 13041108 C T FARSA Silent p.R144R 0.71 TCGA-DA-A1I2-06 19 16908608 16908608 G A NWD1 Missense_Mutation p.D1124N 0.52 deleterious(0.01) possibly_damaging(0.835) TCGA-DA-A1I2-06 19 17025308 17025308 C T CPAMD8 Missense_Mutation p.G1310S 0.47 tolerated(0.12) probably_damaging(0.95) TCGA-DA-A1I2-06 19 39369760 39369760 G A SIRT2 3'UTR 0.54 TCGA-DA-A1I2-06 19 43414732 43414732 G A PSG6 Missense_Mutation p.P236S 0.55 tolerated(0.47) benign(0.004) TCGA-DA-A1I2-06 19 48643347 48643347 G A LIG1 Missense_Mutation p.S323L 0.21 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I2-06 1 119469210 119469210 C T TBX15 Silent p.V42V 0.24 TCGA-DA-A1I2-06 1 12853359 12853359 C T PRAMEF1 5'UTR 0.54 TCGA-DA-A1I2-06 1 153430314 153430314 C T S100A7 Missense_Mutation p.G92R 0.26 tolerated(0.05) possibly_damaging(0.764) TCGA-DA-A1I2-06 1 158450467 158450467 T C OR10R2 Missense_Mutation p.V267A 0.56 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I2-06 1 177199003 177199003 C T BRINP2 5'UTR 0.38 TCGA-DA-A1I2-06 1 196309582 196309582 C T KCNT2 Missense_Mutation p.E558K 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-DA-A1I2-06 1 207803916 207803916 A C CR1 Silent p.G2469G 0.22 TCGA-DA-A1I2-06 1 220275523 220275523 T C IARS2 Silent p.R201R 0.30 TCGA-DA-A1I2-06 1 227842915 227842915 C A ZNF678 Missense_Mutation p.Q322K 0.08 tolerated(1) benign(0) TCGA-DA-A1I2-06 1 247587726 247587726 G A NLRP3 Silent p.R327R 0.31 TCGA-DA-A1I2-06 1 247615087 247615087 G A OR2B11 Silent p.F66F 0.22 TCGA-DA-A1I2-06 1 89849796 89849796 G A GBP6 Missense_Mutation p.R538K 0.92 tolerated(0.16) benign(0.016) TCGA-DA-A1I2-06 20 1457880 1457880 T C SIRPB2 Intron 0.41 TCGA-DA-A1I2-06 20 2411160 2411160 C T TGM6 Silent p.L583L 0.49 TCGA-DA-A1I2-06 20 5086941 5086941 G A TMEM230 Missense_Mutation p.P102S 0.54 tolerated(0.17) benign(0.09) TCGA-DA-A1I2-06 20 744419 744419 G A SLC52A3 Missense_Mutation p.R266W 0.44 deleterious(0.01) possibly_damaging(0.586) TCGA-DA-A1I2-06 21 30927444 30927444 G T GRIK1 Missense_Mutation p.L846M 0.12 tolerated(0.17) probably_damaging(0.986) TCGA-DA-A1I2-06 21 33064136 33064136 G A SCAF4 Silent p.S574S 0.28 TCGA-DA-A1I2-06 21 38269242 38269242 G A HLCS Missense_Mutation p.R457C 0.20 tolerated(0.09) possibly_damaging(0.88) TCGA-DA-A1I2-06 21 42080524 42080524 G A DSCAM Missense_Mutation p.R73C 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A1I2-06 22 50660946 50660946 G A TUBGCP6 Silent p.I782I 0.36 TCGA-DA-A1I2-06 2 128608249 128608249 G A POLR2D Nonsense_Mutation p.Q89* 0.47 TCGA-DA-A1I2-06 2 128608250 128608250 G A POLR2D Silent p.L88L 0.46 TCGA-DA-A1I2-06 2 133175121 133175121 C T GPR39 Missense_Mutation p.P169L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I2-06 2 135616917 135616917 G A ACMSD Missense_Mutation p.M63I 0.14 deleterious(0.05) possibly_damaging(0.832) TCGA-DA-A1I2-06 2 158634711 158634711 G A ACVR1 Missense_Mutation p.P159S 0.42 tolerated(0.68) benign(0.001) TCGA-DA-A1I2-06 2 171055894 171055894 C T MYO3B Missense_Mutation p.P60L 0.64 deleterious(0.02) benign(0.41) TCGA-DA-A1I2-06 2 18766202 18766202 G A NT5C1B Missense_Mutation p.P161S 0.40 tolerated_low_confidence(0.11) possibly_damaging(0.589) TCGA-DA-A1I2-06 2 18766203 18766203 G A NT5C1B Silent p.S160S 0.40 TCGA-DA-A1I2-06 2 196729224 196729224 C T DNAH7 Silent p.R2385R 0.52 TCGA-DA-A1I2-06 2 220136823 220136823 A T TUBA4B RNA 0.30 TCGA-DA-A1I2-06 2 233409127 233409127 G A CHRNG Silent p.L362L 0.28 TCGA-DA-A1I2-06 2 234434202 234434202 C T USP40 Missense_Mutation p.E589K 0.60 deleterious(0.02) benign(0.115) TCGA-DA-A1I2-06 2 242598521 242598521 A T ATG4B Splice_Site p.X153_splice 0.18 TCGA-DA-A1I2-06 2 86344203 86344203 C T PTCD3 Missense_Mutation p.S112F 0.25 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I2-06 3 111659439 111659439 G C PHLDB2 Missense_Mutation p.E782Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I2-06 3 113373885 113373885 T C KIAA2018 Missense_Mutation p.N2215S 0.18 probably_damaging(0.996) TCGA-DA-A1I2-06 3 119334876 119334876 C T PLA1A Missense_Mutation p.P228S 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1I2-06 3 121417268 121417268 A T GOLGB1 Missense_Mutation p.L701H 0.39 probably_damaging(0.991) TCGA-DA-A1I2-06 3 35758848 35758848 C T ARPP21 Missense_Mutation p.R298W 0.39 deleterious(0) benign(0.333) TCGA-DA-A1I2-06 3 36759615 36759615 G A DCLK3 Silent p.L547L 0.42 TCGA-DA-A1I2-06 3 36874965 36874965 C T TRANK1 Missense_Mutation p.G1993R 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A1I2-06 3 52422547 52422547 C T DNAH1 Silent p.Y3095Y 0.67 TCGA-DA-A1I2-06 3 97251304 97251304 G A EPHA6 Missense_Mutation p.R768K 0.28 tolerated(0.11) benign(0.138) TCGA-DA-A1I2-06 4 115767040 115767040 G A NDST4 Missense_Mutation p.P685L 0.41 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I2-06 4 153243936 153243936 G A FBXW7 3'UTR 0.56 TCGA-DA-A1I2-06 4 170327855 170327855 C T NEK1 Missense_Mutation p.R1089K 0.46 tolerated(0.24) benign(0.012) TCGA-DA-A1I2-06 4 25676182 25676182 C T SLC34A2 Silent p.I463I 0.23 TCGA-DA-A1I2-06 4 3210517 3210517 C T HTT Missense_Mutation p.S2057F 0.43 probably_damaging(0.998) TCGA-DA-A1I2-06 4 3210518 3210518 C T HTT Silent p.S2057S 0.43 TCGA-DA-A1I2-06 4 41648870 41648870 C T LIMCH1 Missense_Mutation p.S542F 0.46 tolerated(0.43) benign(0.094) TCGA-DA-A1I2-06 4 41648871 41648871 C T LIMCH1 Silent p.S542S 0.46 TCGA-DA-A1I2-06 4 42145778 42145778 G C BEND4 Missense_Mutation p.Q241E 0.38 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-DA-A1I2-06 4 8228944 8228944 C T SH3TC1 Missense_Mutation p.A508V 0.45 tolerated(0.08) benign(0.066) TCGA-DA-A1I2-06 4 88584516 88584516 G A DMP1 3'UTR 0.34 TCGA-DA-A1I2-06 4 88584517 88584517 G A DMP1 3'UTR 0.34 TCGA-DA-A1I2-06 5 101795412 101795412 G A SLCO6A1 Silent p.V323V 0.26 TCGA-DA-A1I2-06 5 118503322 118503322 A G DMXL1 Missense_Mutation p.I1721V 0.50 deleterious(0.03) benign(0.019) TCGA-DA-A1I2-06 5 118965458 118965458 G A FAM170A 5'UTR 0.19 TCGA-DA-A1I2-06 5 127700391 127700391 T C FBN2 Missense_Mutation p.D777G 0.26 tolerated(0.18) possibly_damaging(0.542) TCGA-DA-A1I2-06 5 140559978 140559978 C T PCDHB8 Missense_Mutation p.S788F 0.27 deleterious_low_confidence(0.02) benign(0.017) TCGA-DA-A1I2-06 5 147027949 147027949 C T JAKMIP2 Missense_Mutation p.R309Q 0.26 deleterious(0.02) probably_damaging(0.964) TCGA-DA-A1I2-06 5 14758613 14758613 G A ANKH Silent p.A136A 0.31 TCGA-DA-A1I2-06 5 14758614 14758614 G A ANKH Missense_Mutation p.A136V 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I2-06 5 19473754 19473754 G A CDH18 Missense_Mutation p.R652W 0.20 deleterious(0) probably_damaging(0.938) TCGA-DA-A1I2-06 5 24491860 24491860 C T CDH10 Silent p.V567V 0.59 TCGA-DA-A1I2-06 5 35793359 35793359 G T SPEF2 Missense_Mutation p.E1551D 0.20 tolerated(0.4) benign(0.01) TCGA-DA-A1I2-06 5 37196031 37196031 C T C5orf42 Missense_Mutation p.G1247E 0.47 tolerated(0.27) benign(0.032) TCGA-DA-A1I2-06 5 65058797 65058797 C T NLN Silent p.T104T 0.29 TCGA-DA-A1I2-06 5 68667346 68667346 T C RAD17 Missense_Mutation p.S2P 0.52 deleterious(0) probably_damaging(0.953) TCGA-DA-A1I2-06 6 100897319 100897319 C T SIM1 Missense_Mutation p.E155K 0.50 deleterious(0.02) possibly_damaging(0.559) TCGA-DA-A1I2-06 6 102483315 102483315 C T GRIK2 Missense_Mutation p.L729F 0.24 deleterious(0.01) probably_damaging(0.944) TCGA-DA-A1I2-06 6 110088051 110088051 A G FIG4 Missense_Mutation p.K568R 0.20 tolerated(0.87) benign(0.002) TCGA-DA-A1I2-06 6 110088053 110088053 G A FIG4 Missense_Mutation p.D569N 0.22 deleterious(0) probably_damaging(0.963) TCGA-DA-A1I2-06 6 117127589 117127589 G A GPRC6A Missense_Mutation p.R427W 0.35 tolerated(0.09) benign(0.021) TCGA-DA-A1I2-06 6 129634041 129634041 C T LAMA2 Silent p.F1070F 0.66 TCGA-DA-A1I2-06 6 31715210 31715210 G T MSH5 Splice_Site p.X271_splice 0.34 TCGA-DA-A1I2-06 6 46626644 46626644 A C SLC25A27 Intron 0.36 TCGA-DA-A1I2-06 6 46849211 46849211 G A GPR116 Silent p.S265S 0.39 TCGA-DA-A1I2-06 6 49604381 49604381 C T RHAG Missense_Mutation p.E49K 0.40 tolerated(0.69) benign(0.005) TCGA-DA-A1I2-06 6 90333234 90333234 G A ANKRD6 Missense_Mutation p.D335N 0.54 tolerated(0.34) benign(0.002) TCGA-DA-A1I2-06 7 131866242 131866242 G A PLXNA4 Silent p.I1130I 0.36 TCGA-DA-A1I2-06 7 133943150 133943150 C T LRGUK Silent p.T780T 0.47 TCGA-DA-A1I2-06 7 133943151 133943151 C T LRGUK Missense_Mutation p.R781W 0.47 deleterious(0.02) benign(0.022) TCGA-DA-A1I2-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I2-06 7 141740561 141740561 G A MGAM Missense_Mutation p.E805K 0.27 tolerated(0.37) benign(0.01) TCGA-DA-A1I2-06 7 150163958 150163958 G A GIMAP8 Missense_Mutation p.E58K 0.55 tolerated(0.7) benign(0.026) TCGA-DA-A1I2-06 7 157060408 157060408 C T UBE3C Missense_Mutation p.L1071F 0.55 deleterious(0.05) possibly_damaging(0.81) TCGA-DA-A1I2-06 7 30692948 30692948 C T CRHR2 3'UTR 0.30 TCGA-DA-A1I2-06 7 34698043 34698043 G A NPSR1 Missense_Mutation p.E7K 0.43 tolerated_low_confidence(0.07) benign(0.031) TCGA-DA-A1I2-06 7 77708388 77708388 G A MAGI2 Silent p.I1194I 0.40 TCGA-DA-A1I2-06 7 86548562 86548562 G A KIAA1324L Silent p.I488I 0.41 TCGA-DA-A1I2-06 8 110376846 110376846 G A PKHD1L1 Silent p.R48R 0.45 TCGA-DA-A1I2-06 8 143956421 143956421 G A CYP11B1 Silent p.C450C 0.39 TCGA-DA-A1I2-06 8 145001238 145001238 G A PLEC Silent p.L1421L 0.39 TCGA-DA-A1I2-06 8 53084721 53084721 G A ST18 Missense_Mutation p.P234S 0.38 tolerated(0.08) benign(0.031) TCGA-DA-A1I2-06 8 63659653 63659653 G A NKAIN3 Missense_Mutation p.E146K 0.55 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I2-06 9 102677597 102677597 C T STX17 Missense_Mutation p.P26S 0.79 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I2-06 9 111663953 111663953 G A IKBKAP Silent p.V621V 0.27 TCGA-DA-A1I2-06 9 5231701 5231701 G A INSL4 Missense_Mutation p.E60K 0.77 tolerated(0.06) benign(0.017) TCGA-DA-A1I2-06 X 103349514 103349514 G A SLC25A53 Nonsense_Mutation p.Q143* 0.92 TCGA-DA-A1I2-06 X 107431170 107431170 G A COL4A6 Missense_Mutation p.R560W 0.89 probably_damaging(0.981) TCGA-DA-A1I2-06 X 135494509 135494509 A C GPR112 Silent p.R3007R 0.92 TCGA-DA-A1I2-06 X 55479006 55479006 G C MAGEH1 Missense_Mutation p.E67Q 0.09 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-DA-A1I2-06 X 73962141 73962141 C T KIAA2022 Missense_Mutation p.E751K 0.90 tolerated(0.06) benign(0.043) TCGA-DA-A1I4-06 10 114575103 114575103 C T VTI1A Silent p.T205T 0.40 TCGA-DA-A1I4-06 10 117001393 117001393 C T ATRNL1 Silent p.Y522Y 0.31 TCGA-DA-A1I4-06 10 135438846 135438846 G A FRG2B Silent p.I198I 0.38 TCGA-DA-A1I4-06 10 37508103 37508103 G A ANKRD30A Missense_Mutation p.E1099K 0.33 tolerated(0.4) benign(0.001) TCGA-DA-A1I4-06 10 55626419 55626419 C T PCDH15 Missense_Mutation p.G1234S 0.39 tolerated(0.92) benign(0.025) TCGA-DA-A1I4-06 10 61835104 61835104 A T ANK3 Missense_Mutation p.F1845L 0.40 benign(0) TCGA-DA-A1I4-06 10 64159453 64159453 C T ZNF365 Intron 0.45 TCGA-DA-A1I4-06 10 70332292 70332292 C T TET1 Missense_Mutation p.P66L 0.47 tolerated(0.14) benign(0.06) TCGA-DA-A1I4-06 10 91497679 91497679 C T KIF20B Silent p.D987D 0.31 TCGA-DA-A1I4-06 11 101833617 101833617 G A KIAA1377 Silent p.K617K 0.29 TCGA-DA-A1I4-06 11 1025023 1025023 G A MUC6 Missense_Mutation p.R1016C 0.43 unknown(0) TCGA-DA-A1I4-06 11 108382300 108382300 C T EXPH5 Missense_Mutation p.E1312K 0.34 tolerated(0.13) benign(0.046) TCGA-DA-A1I4-06 11 111707007 111707007 G A ALG9 Nonsense_Mutation p.Q324* 0.29 TCGA-DA-A1I4-06 11 117314695 117314695 G A DSCAML1 Missense_Mutation p.R1317C 0.33 deleterious(0) probably_damaging(0.921) TCGA-DA-A1I4-06 11 118007709 118007709 G A SCN4B 3'UTR 0.25 TCGA-DA-A1I4-06 11 18159526 18159526 C T MRGPRX3 Silent p.F259F 0.30 TCGA-DA-A1I4-06 11 18485507 18485507 G A LDHAL6A Splice_Site p.X43_splice 0.33 TCGA-DA-A1I4-06 11 198517 198517 G A ODF3 Missense_Mutation p.A156T 0.26 tolerated(1) benign(0.002) TCGA-DA-A1I4-06 11 20104680 20104680 C T NAV2 Missense_Mutation p.S1877F 0.32 deleterious(0.01) benign(0.372) TCGA-DA-A1I4-06 11 47819553 47819553 G A NUP160 Missense_Mutation p.P1054S 0.31 tolerated(0.06) benign(0.299) TCGA-DA-A1I4-06 11 48238934 48238934 C T OR4B1 Silent p.F191F 0.20 TCGA-DA-A1I4-06 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-DA-A1I4-06 11 55872707 55872707 C T OR8H2 Silent p.F63F 0.21 TCGA-DA-A1I4-06 11 56127730 56127730 C T OR8J1 Missense_Mutation p.P3L 0.23 tolerated(0.11) benign(0.009) TCGA-DA-A1I4-06 11 57428556 57428556 G A CLP1 Missense_Mutation p.R309Q 0.20 tolerated(0.13) benign(0.069) TCGA-DA-A1I4-06 11 58034641 58034641 G A OR10W1 Silent p.S230S 0.33 TCGA-DA-A1I4-06 11 58274946 58274946 G A OR5B21 Silent p.I211I 0.23 TCGA-DA-A1I4-06 11 62327212 62327212 G A EEF1G Missense_Mutation p.S418F 0.41 tolerated(0.12) benign(0.024) TCGA-DA-A1I4-06 11 62569486 62569486 G A NXF1 Silent p.F162F 0.24 TCGA-DA-A1I4-06 11 62607074 62607074 C T WDR74 5'UTR 0.28 TCGA-DA-A1I4-06 11 64707209 64707209 C T C11orf85 Missense_Mutation p.E193K 0.36 tolerated_low_confidence(0.89) benign(0.001) TCGA-DA-A1I4-06 11 6477304 6477304 G A TRIM3 Nonsense_Mutation p.Q511* 0.24 TCGA-DA-A1I4-06 11 67223069 67223069 G A CABP4 Missense_Mutation p.G59R 0.27 deleterious(0.02) possibly_damaging(0.459) TCGA-DA-A1I4-06 11 67379630 67379630 G A NDUFV1 Missense_Mutation p.R401K 0.27 tolerated_low_confidence(1) benign(0.004) TCGA-DA-A1I4-06 11 67947635 67947635 G A SUV420H1 Missense_Mutation p.S114L 0.38 tolerated_low_confidence(0.3) benign(0.001) TCGA-DA-A1I4-06 11 70332969 70332969 G A SHANK2 Silent p.S1144S 0.29 TCGA-DA-A1I4-06 11 72145245 72145245 G A CLPB Missense_Mutation p.P92S 0.30 tolerated_low_confidence(0.18) benign(0.008) TCGA-DA-A1I4-06 11 75852526 75852526 C T UVRAG 3'UTR 0.24 TCGA-DA-A1I4-06 12 102591416 102591416 C T PMCH Missense_Mutation p.G45R 0.23 tolerated(0.16) possibly_damaging(0.661) TCGA-DA-A1I4-06 12 10977959 10977959 G A TAS2R10 Missense_Mutation p.L304F 0.25 tolerated(0.1) benign(0.042) TCGA-DA-A1I4-06 12 113836602 113836602 G A SDS Silent p.V81V 0.36 TCGA-DA-A1I4-06 12 124111662 124111662 G A EIF2B1 Silent p.V137V 0.20 TCGA-DA-A1I4-06 12 124283838 124283838 G A DNAH10 Missense_Mutation p.E619K 0.26 probably_damaging(0.968) TCGA-DA-A1I4-06 12 18891049 18891049 G A CAPZA3 5'UTR 0.27 TCGA-DA-A1I4-06 12 41410719 41410719 G A CNTN1 Splice_Site p.X807_splice 0.17 TCGA-DA-A1I4-06 12 41900423 41900423 G A PDZRN4 Missense_Mutation p.D337N 0.40 deleterious(0.05) probably_damaging(0.998) TCGA-DA-A1I4-06 12 46244034 46244034 C T ARID2 Missense_Mutation p.P710S 0.34 tolerated_low_confidence(0.9) benign(0.004) TCGA-DA-A1I4-06 12 54936379 54936379 C T NCKAP1L Silent p.F1098F 0.23 TCGA-DA-A1I4-06 12 55863568 55863568 C T OR6C70 Missense_Mutation p.D119N 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A1I4-06 12 57906612 57906612 G A MARS Missense_Mutation p.G611E 0.25 deleterious(0) possibly_damaging(0.498) TCGA-DA-A1I4-06 12 57906613 57906613 G A MARS Silent p.G611G 0.25 TCGA-DA-A1I4-06 12 58190272 58190272 C T TSFM Missense_Mutation p.T316I 0.24 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I4-06 12 6781621 6781621 G A ZNF384 Missense_Mutation p.S330F 0.24 deleterious(0) possibly_damaging(0.485) TCGA-DA-A1I4-06 13 110847436 110847436 G A COL4A1 Missense_Mutation p.P439S 0.47 possibly_damaging(0.876) TCGA-DA-A1I4-06 13 32950923 32950923 C T BRCA2 Missense_Mutation p.L2917F 0.44 deleterious(0.03) benign(0.258) TCGA-DA-A1I4-06 14 106092128 106092128 G A IGHG4 Silent p.T92T 0.21 TCGA-DA-A1I4-06 14 106471520 106471520 G A IGHV1-3 Missense_Mutation p.S26F 0.33 deleterious(0) possibly_damaging(0.619) TCGA-DA-A1I4-06 14 20248933 20248933 G T OR4M1 Missense_Mutation p.G151V 0.14 tolerated(0.1) possibly_damaging(0.85) TCGA-DA-A1I4-06 14 21821653 21821653 G A SUPT16H Nonsense_Mutation p.R998* 0.31 TCGA-DA-A1I4-06 14 21821654 21821654 G A SUPT16H Silent p.A997A 0.31 TCGA-DA-A1I4-06 14 36960451 36960451 G A SFTA3 Nonsense_Mutation p.Q30* 0.24 TCGA-DA-A1I4-06 14 52526933 52526933 C T NID2 Missense_Mutation p.G226S 0.20 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I4-06 14 74764666 74764666 G A ABCD4 Missense_Mutation p.T131I 0.29 tolerated(0.05) benign(0.021) TCGA-DA-A1I4-06 14 74968203 74968203 C T LTBP2 Missense_Mutation p.G1754D 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 14 77269744 77269744 G A ANGEL1 Missense_Mutation p.L530F 0.14 tolerated(0.19) benign(0.053) TCGA-DA-A1I4-06 14 77269745 77269745 G A ANGEL1 Silent p.V529V 0.14 TCGA-DA-A1I4-06 14 91791208 91791208 C A CCDC88C Missense_Mutation p.E419D 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I4-06 14 94700961 94700961 G A PPP4R4 Missense_Mutation p.R229Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I4-06 14 94708704 94708704 G A PPP4R4 Missense_Mutation p.E409K 0.28 tolerated(0.07) benign(0.311) TCGA-DA-A1I4-06 14 94962730 94962730 C T SERPINA12 Nonsense_Mutation p.W295* 0.28 TCGA-DA-A1I4-06 15 35212628 35212628 T A AQR Missense_Mutation p.T376S 0.28 tolerated(0.47) benign(0.004) TCGA-DA-A1I4-06 15 42483350 42483350 G A VPS39 Nonsense_Mutation p.Q74* 0.36 TCGA-DA-A1I4-06 15 49437178 49437178 A G COPS2 Missense_Mutation p.L51S 0.23 deleterious(0) possibly_damaging(0.507) TCGA-DA-A1I4-06 15 51502906 51502906 G A CYP19A1 3'UTR 0.26 TCGA-DA-A1I4-06 15 54919039 54919039 G A UNC13C Missense_Mutation p.E2125K 0.23 deleterious_low_confidence(0) benign(0.43) TCGA-DA-A1I4-06 15 59381920 59381920 G C RNF111 Missense_Mutation p.G878R 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1I4-06 15 74706984 74706984 G A SEMA7A Missense_Mutation p.P400S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I4-06 15 79296400 79296400 C G RASGRF1 Missense_Mutation p.K747N 0.30 deleterious(0.02) benign(0.268) TCGA-DA-A1I4-06 15 90347724 90347724 G A ANPEP Missense_Mutation p.S341L 0.29 tolerated(0.96) benign(0.023) TCGA-DA-A1I4-06 16 1551436 1551436 C T TELO2 Silent p.L433L 0.31 TCGA-DA-A1I4-06 16 16276350 16276350 C T ABCC6 Silent p.L722L 0.45 TCGA-DA-A1I4-06 16 20873521 20873521 A C DCUN1D3 Missense_Mutation p.F114V 0.25 deleterious(0.01) possibly_damaging(0.727) TCGA-DA-A1I4-06 16 21049241 21049241 G A DNAH3 Missense_Mutation p.H1598Y 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 16 3140469 3140469 G A ZSCAN10 Silent p.S267S 0.23 TCGA-DA-A1I4-06 16 3644580 3644580 A C SLX4 Silent p.V678V 0.21 TCGA-DA-A1I4-06 16 57984328 57984328 G A CNGB1 Missense_Mutation p.P331S 0.35 tolerated_low_confidence(0.11) benign(0.08) TCGA-DA-A1I4-06 16 615119 615119 C T C16orf11 Nonsense_Mutation p.Q510* 0.35 TCGA-DA-A1I4-06 16 732548 732548 C T JMJD8 3'UTR 0.26 TCGA-DA-A1I4-06 16 732549 732549 C T JMJD8 3'UTR 0.27 TCGA-DA-A1I4-06 16 737698 737698 C T WDR24 Missense_Mutation p.D175N 0.27 tolerated(0.32) possibly_damaging(0.466) TCGA-DA-A1I4-06 16 737699 737699 C T WDR24 Silent p.R174R 0.29 TCGA-DA-A1I4-06 16 7629799 7629799 G A RBFOX1 Silent p.P117P 0.23 TCGA-DA-A1I4-06 16 84270876 84270876 G A KCNG4 Silent p.L72L 0.41 TCGA-DA-A1I4-06 16 90030674 90030674 G A DEF8 Missense_Mutation p.E428K 0.53 tolerated(0.28) benign(0.327) TCGA-DA-A1I4-06 17 10212703 10212703 C T MYH13 Missense_Mutation p.E1673K 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A1I4-06 17 10427143 10427143 C T MYH2 Missense_Mutation p.G1745E 0.17 tolerated(0.06) benign(0.099) TCGA-DA-A1I4-06 17 18565894 18565894 T G ZNF286B Missense_Mutation p.T309P 0.17 deleterious(0.01) possibly_damaging(0.642) TCGA-DA-A1I4-06 17 21319128 21319128 C T KCNJ12 Silent p.A158A 0.12 TCGA-DA-A1I4-06 17 3119691 3119691 C T OR1A1 Silent p.F259F 0.22 TCGA-DA-A1I4-06 17 32614638 32614638 G A CCL11 Missense_Mutation p.D75N 0.37 tolerated(0.07) benign(0.322) TCGA-DA-A1I4-06 17 33690245 33690245 G A SLFN11 Silent p.F194F 0.28 TCGA-DA-A1I4-06 17 37228742 37228742 C T PLXDC1 Intron 0.50 TCGA-DA-A1I4-06 17 38928356 38928356 G A KRT26 Nonsense_Mutation p.R4* 0.35 TCGA-DA-A1I4-06 17 40695514 40695514 T A NAGLU Missense_Mutation p.L497Q 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 17 40837275 40837275 C T CNTNAP1 Silent p.S184S 0.30 TCGA-DA-A1I4-06 17 51900577 51900577 G A KIF2B Silent p.V61V 0.30 TCGA-DA-A1I4-06 17 57262485 57262485 C T PRR11 Missense_Mutation p.P67S 0.23 tolerated(0.17) benign(0.082) TCGA-DA-A1I4-06 17 60769493 60769493 C T MRC2 Missense_Mutation p.P1405S 0.30 tolerated(0.61) benign(0.005) TCGA-DA-A1I4-06 17 6406856 6406856 C T PITPNM3 Missense_Mutation p.E89K 0.12 tolerated(0.21) benign(0.071) TCGA-DA-A1I4-06 17 66440649 66440649 G A WIPI1 Missense_Mutation p.P139S 0.35 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I4-06 17 66925340 66925340 C T ABCA8 Silent p.K325K 0.48 TCGA-DA-A1I4-06 17 67148207 67148207 G A ABCA10 Silent p.F1458F 0.23 TCGA-DA-A1I4-06 17 72815924 72815924 C T TMEM104 Silent p.F224F 0.23 TCGA-DA-A1I4-06 17 7329686 7329686 C T C17orf74 Missense_Mutation p.R126C 0.29 tolerated(0.15) possibly_damaging(0.835) TCGA-DA-A1I4-06 17 74472909 74472909 C T RHBDF2 Intron 0.29 TCGA-DA-A1I4-06 17 74922712 74922712 G A MGAT5B Silent p.T408T 0.25 TCGA-DA-A1I4-06 17 8000072 8000072 C T ALOXE3 Missense_Mutation p.R802Q 0.28 tolerated(0.43) benign(0.013) TCGA-DA-A1I4-06 18 60015474 60015474 G A TNFRSF11A Missense_Mutation p.C50Y 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 18 6962005 6962005 G A LAMA1 Missense_Mutation p.S2464F 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-DA-A1I4-06 18 70423306 70423306 C G NETO1 Missense_Mutation p.Q315H 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I4-06 19 12817007 12817007 C G TNPO2 Intron 0.27 TCGA-DA-A1I4-06 19 15053193 15053193 G A OR7C2 Missense_Mutation p.G298E 0.20 tolerated_low_confidence(0.35) benign(0.072) TCGA-DA-A1I4-06 19 15383775 15383775 G A BRD4 Missense_Mutation p.P46S 0.26 unknown(0) TCGA-DA-A1I4-06 19 16770964 16770964 C T SMIM7 5'UTR 0.38 TCGA-DA-A1I4-06 19 19655800 19655800 G A CILP2 Missense_Mutation p.E816K 0.50 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I4-06 19 3224881 3224881 C T CELF5 Silent p.F48F 0.29 TCGA-DA-A1I4-06 19 35176128 35176128 C T ZNF302 Missense_Mutation p.P396S 0.19 deleterious(0) probably_damaging(0.945) TCGA-DA-A1I4-06 19 3985459 3985459 G A EEF2 5'UTR 0.31 TCGA-DA-A1I4-06 19 40411698 40411698 C T FCGBP Silent p.V1310V 0.29 TCGA-DA-A1I4-06 19 42596356 42596356 C T POU2F2 Missense_Mutation p.G422E 0.24 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-DA-A1I4-06 19 43763198 43763198 C T PSG9 Missense_Mutation p.E267K 0.31 tolerated(0.21) benign(0.012) TCGA-DA-A1I4-06 19 46511402 46511402 C T CCDC61 Missense_Mutation p.H132Y 0.30 deleterious(0.02) probably_damaging(0.915) TCGA-DA-A1I4-06 19 47910355 47910355 G A MEIS3 Silent p.I371I 0.20 TCGA-DA-A1I4-06 19 50040373 50040373 C T RCN3 Nonsense_Mutation p.Q177* 0.27 TCGA-DA-A1I4-06 19 54183226 54183226 T C MIR519E RNA 0.31 TCGA-DA-A1I4-06 19 54724541 54724541 T C LILRB3 Missense_Mutation p.Y372C 0.31 tolerated(0.12) probably_damaging(0.951) TCGA-DA-A1I4-06 19 54744293 54744293 T C LILRA6 Missense_Mutation p.Y372C 0.11 tolerated(0.13) benign(0.112) TCGA-DA-A1I4-06 19 55239293 55239293 G A KIR3DL3 Missense_Mutation p.G191E 0.17 deleterious(0.04) probably_damaging(1) TCGA-DA-A1I4-06 19 8389978 8389978 C T KANK3 Missense_Mutation p.A647T 0.20 deleterious(0) benign(0) TCGA-DA-A1I4-06 19 9046738 9046738 C T MUC16 Silent p.V11631V 0.34 TCGA-DA-A1I4-06 19 9085586 9085586 G A MUC16 Missense_Mutation p.H2077Y 0.33 unknown(0) TCGA-DA-A1I4-06 19 9296742 9296742 G A OR7D2 Missense_Mutation p.M95I 0.23 tolerated_low_confidence(0.36) benign(0.001) TCGA-DA-A1I4-06 1 113000077 113000077 C T CTTNBP2NL 3'UTR 0.35 TCGA-DA-A1I4-06 1 11736105 11736105 G A MAD2L2 Missense_Mutation p.P142L 0.25 deleterious(0.01) benign(0.191) TCGA-DA-A1I4-06 1 11736106 11736106 G A MAD2L2 Missense_Mutation p.P142S 0.26 tolerated(0.37) benign(0.006) TCGA-DA-A1I4-06 1 117504287 117504287 G A PTGFRN Missense_Mutation p.E546K 0.22 tolerated(0.34) possibly_damaging(0.888) TCGA-DA-A1I4-06 1 118539226 118539226 G A SPAG17 Silent p.V1639V 0.13 TCGA-DA-A1I4-06 1 11896130 11896130 C T CLCN6 Missense_Mutation p.P634S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I4-06 1 120437405 120437405 G A ADAM30 Missense_Mutation p.P519S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I4-06 1 150532255 150532255 G A ADAMTSL4 Missense_Mutation p.G988R 0.13 tolerated(0.12) probably_damaging(1) TCGA-DA-A1I4-06 1 152276755 152276755 C T FLG Missense_Mutation p.G3536E 0.49 unknown(0) TCGA-DA-A1I4-06 1 152282094 152282094 C T FLG Silent p.G1756G 0.50 TCGA-DA-A1I4-06 1 152282095 152282095 C T FLG Missense_Mutation p.G1756E 0.49 probably_damaging(0.931) TCGA-DA-A1I4-06 1 152975920 152975920 C T SPRR3 Missense_Mutation p.P142S 0.53 deleterious(0.01) possibly_damaging(0.821) TCGA-DA-A1I4-06 1 154524607 154524607 C A UBE2Q1 Nonsense_Mutation p.E310* 0.17 TCGA-DA-A1I4-06 1 155290374 155290374 C T FDPS Missense_Mutation p.R412C 0.57 tolerated(0.09) benign(0.001) TCGA-DA-A1I4-06 1 158435597 158435597 G A OR10K1 Silent p.L82L 0.53 TCGA-DA-A1I4-06 1 159410389 159410389 G A OR10J1 Missense_Mutation p.D281N 0.15 tolerated(0.07) possibly_damaging(0.766) TCGA-DA-A1I4-06 1 16902870 16902870 C T NBPF1 Missense_Mutation p.A671T 0.09 tolerated(0.18) probably_damaging(0.971) TCGA-DA-A1I4-06 1 169698340 169698340 G A SELE Silent p.I359I 0.53 TCGA-DA-A1I4-06 1 173517593 173517593 C T SLC9C2 Missense_Mutation p.E466K 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I4-06 1 183775610 183775610 A T RGL1 Missense_Mutation p.R78S 0.17 deleterious(0.02) benign(0.017) TCGA-DA-A1I4-06 1 186375259 186375259 C T C1orf27 Missense_Mutation p.P349S 0.54 tolerated(0.13) benign(0.098) TCGA-DA-A1I4-06 1 192153683 192153683 A T RGS18 Nonstop_Mutation p.*236Lext*17 0.11 TCGA-DA-A1I4-06 1 200960261 200960261 C T KIF21B Missense_Mutation p.R824H 0.20 deleterious(0) possibly_damaging(0.726) TCGA-DA-A1I4-06 1 201193886 201193886 G A IGFN1 Missense_Mutation p.G3457D 0.13 probably_damaging(0.91) TCGA-DA-A1I4-06 1 203040846 203040846 C T PPFIA4 Silent p.F611F 0.43 TCGA-DA-A1I4-06 1 214556992 214556992 G A PTPN14 Nonsense_Mutation p.Q736* 0.11 TCGA-DA-A1I4-06 1 214556993 214556993 G A PTPN14 Silent p.A735A 0.12 TCGA-DA-A1I4-06 1 228467077 228467077 C T OBSCN Missense_Mutation p.S2872F 0.22 probably_damaging(0.975) TCGA-DA-A1I4-06 1 23111292 23111292 C T EPHB2 Silent p.F178F 0.18 TCGA-DA-A1I4-06 1 233508025 233508025 C T MLK4 Intron 0.57 TCGA-DA-A1I4-06 1 23384007 23384007 C T KDM1A Missense_Mutation p.R341C 0.33 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I4-06 1 234367362 234367362 G A SLC35F3 Silent p.R161R 0.17 TCGA-DA-A1I4-06 1 242159558 242159558 C T MAP1LC3C Missense_Mutation p.M117I 0.18 tolerated(0.23) benign(0.039) TCGA-DA-A1I4-06 1 242253348 242253348 C T PLD5 Silent p.Q473Q 0.16 TCGA-DA-A1I4-06 1 27875200 27875200 G A AHDC1 Silent p.L1143L 0.22 TCGA-DA-A1I4-06 1 27875201 27875201 G A AHDC1 Silent p.I1142I 0.21 TCGA-DA-A1I4-06 1 27942047 27942047 C T FGR Missense_Mutation p.E306K 0.12 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I4-06 1 34285417 34285417 G A CSMD2 Silent p.F367F 0.26 TCGA-DA-A1I4-06 1 43119491 43119491 T C CCDC30 Missense_Mutation p.F715S 0.19 tolerated(0.11) benign(0.146) TCGA-DA-A1I4-06 1 46073706 46073706 C T NASP Missense_Mutation p.P375S 0.25 tolerated_low_confidence(0.13) benign(0.009) TCGA-DA-A1I4-06 1 52891101 52891101 G A ZCCHC11 Missense_Mutation p.S1597L 0.23 tolerated_low_confidence(0.13) probably_damaging(0.997) TCGA-DA-A1I4-06 1 54238032 54238032 C T NDC1 Missense_Mutation p.R644Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I4-06 1 55148375 55148375 T G MROH7 Missense_Mutation p.C810G 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-DA-A1I4-06 1 55518345 55518345 G A PCSK9 Missense_Mutation p.G227D 0.30 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I4-06 1 75685026 75685026 G A SLC44A5 Silent p.F394F 0.28 TCGA-DA-A1I4-06 20 1918222 1918222 C T SIRPA 3'UTR 0.30 TCGA-DA-A1I4-06 20 1960805 1960805 T C PDYN 3'UTR 0.35 TCGA-DA-A1I4-06 20 29992835 29992835 C T DEFB121 Missense_Mutation p.E38K 0.33 deleterious(0) possibly_damaging(0.874) TCGA-DA-A1I4-06 20 30381768 30381768 C T TPX2 Nonsense_Mutation p.R543* 0.29 TCGA-DA-A1I4-06 20 44980726 44980726 G A SLC35C2 Silent p.T267T 0.17 TCGA-DA-A1I4-06 20 44980727 44980727 G A SLC35C2 Missense_Mutation p.T267I 0.17 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I4-06 20 47991189 47991189 C T KCNB1 Missense_Mutation p.R303Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I4-06 20 5566885 5566885 G A GPCPD1 Missense_Mutation p.H88Y 0.19 tolerated(0.06) possibly_damaging(0.698) TCGA-DA-A1I4-06 20 57896107 57896107 G A EDN3 Missense_Mutation p.G134E 0.25 deleterious(0.03) benign(0.274) TCGA-DA-A1I4-06 22 26164488 26164488 C T MYO18B Missense_Mutation p.S202F 0.38 deleterious_low_confidence(0.05) benign(0.094) TCGA-DA-A1I4-06 22 30221628 30221628 C T ASCC2 Missense_Mutation p.D75N 0.32 tolerated(0.16) benign(0.041) TCGA-DA-A1I4-06 22 31664134 31664134 C T LIMK2 Missense_Mutation p.P401L 0.26 deleterious(0.01) benign(0.148) TCGA-DA-A1I4-06 22 38884057 38884057 T C DDX17 Missense_Mutation p.H504R 0.38 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I4-06 22 42456971 42456971 G A NAGA Missense_Mutation p.S353F 0.24 tolerated(0.3) benign(0.017) TCGA-DA-A1I4-06 2 100623390 100623390 G A AFF3 Missense_Mutation p.L218F 0.31 tolerated(0.48) possibly_damaging(0.75) TCGA-DA-A1I4-06 2 107460402 107460402 C T ST6GAL2 Missense_Mutation p.R11Q 0.28 benign(0.115) TCGA-DA-A1I4-06 2 130792745 130792745 G A FAR2P1 5'Flank 0.31 TCGA-DA-A1I4-06 2 133489532 133489532 G A NCKAP5 Nonsense_Mutation p.Q1741* 0.40 TCGA-DA-A1I4-06 2 136579556 136579556 G A LCT Intron 0.23 TCGA-DA-A1I4-06 2 141777614 141777614 G A LRP1B Missense_Mutation p.T616I 0.20 possibly_damaging(0.803) TCGA-DA-A1I4-06 2 158272504 158272504 C T CYTIP Missense_Mutation p.M255I 0.25 tolerated(0.58) benign(0) TCGA-DA-A1I4-06 2 168114919 168114919 G A XIRP2 3'UTR 0.36 TCGA-DA-A1I4-06 2 179484829 179484829 C T TTN Missense_Mutation p.E15439K 0.29 TCGA-DA-A1I4-06 2 179576846 179576846 G A TTN Silent p.S9237S 0.28 TCGA-DA-A1I4-06 2 179640923 179640923 G A TTN Missense_Mutation p.R1890C 0.25 TCGA-DA-A1I4-06 2 187626884 187626884 C T FAM171B Silent p.I605I 0.32 TCGA-DA-A1I4-06 2 189599297 189599297 G A DIRC1 3'UTR 0.28 TCGA-DA-A1I4-06 2 21230262 21230262 C T APOB Missense_Mutation p.E3160K 0.25 benign(0.013) TCGA-DA-A1I4-06 2 226378250 226378250 G A NYAP2 Missense_Mutation p.D129N 0.33 tolerated(0.15) benign(0.069) TCGA-DA-A1I4-06 2 228128587 228128587 G A COL4A3 Missense_Mutation p.M414I 0.27 benign(0.127) TCGA-DA-A1I4-06 2 228137771 228137771 G A COL4A3 Missense_Mutation p.G622E 0.32 unknown(0) TCGA-DA-A1I4-06 2 230914547 230914547 G A SLC16A14 Silent p.S111S 0.32 TCGA-DA-A1I4-06 2 231155263 231155263 G A SP140 Silent p.K603K 0.30 TCGA-DA-A1I4-06 2 241463263 241463263 G A ANKMY1 Intron 0.27 TCGA-DA-A1I4-06 2 241463264 241463264 G A ANKMY1 Intron 0.28 TCGA-DA-A1I4-06 2 25057785 25057785 G A ADCY3 Silent p.P561P 0.33 TCGA-DA-A1I4-06 2 27372192 27372192 G A TCF23 Missense_Mutation p.G64E 0.27 tolerated(0.11) benign(0.025) TCGA-DA-A1I4-06 2 27706224 27706224 G A IFT172 Missense_Mutation p.L168F 0.21 deleterious(0) benign(0.43) TCGA-DA-A1I4-06 2 32461352 32461352 G A NLRC4 Silent p.L860L 0.23 TCGA-DA-A1I4-06 2 33505184 33505184 C T LTBP1 Missense_Mutation p.P1024L 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-DA-A1I4-06 2 33518321 33518321 C T LTBP1 Silent p.T1069T 0.19 TCGA-DA-A1I4-06 2 49190690 49190690 G A FSHR Missense_Mutation p.H424Y 0.16 tolerated(0.72) benign(0.006) TCGA-DA-A1I4-06 2 5833922 5833922 G A SOX11 Missense_Mutation p.D357N 0.50 deleterious(0.03) benign(0.143) TCGA-DA-A1I4-06 2 85777220 85777220 T C GGCX Missense_Mutation p.N705S 0.25 tolerated(0.17) possibly_damaging(0.638) TCGA-DA-A1I4-06 2 90121877 90121877 C A IGKV1D-17 Missense_Mutation p.A32D 0.25 deleterious(0) benign(0.039) TCGA-DA-A1I4-06 2 95815791 95815791 G A ZNF514 Missense_Mutation p.L147F 0.27 tolerated(0.7) benign(0.125) TCGA-DA-A1I4-06 3 10254984 10254984 G A IRAK2 Missense_Mutation p.D208N 0.24 tolerated(0.98) benign(0.005) TCGA-DA-A1I4-06 3 108183656 108183656 C T MYH15 Missense_Mutation p.M540I 0.32 deleterious(0) benign(0.154) TCGA-DA-A1I4-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.27 deleterious(0) benign(0.02) TCGA-DA-A1I4-06 3 128181294 128181294 A C DNAJB8 3'UTR 0.24 TCGA-DA-A1I4-06 3 129007776 129007776 C T HMCES Missense_Mutation p.S88F 0.23 deleterious(0.01) probably_damaging(0.913) TCGA-DA-A1I4-06 3 130345357 130345357 G A COL6A6 Missense_Mutation p.G1636E 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 3 137787113 137787113 G A DZIP1L Missense_Mutation p.P571L 0.25 tolerated(0.31) benign(0.003) TCGA-DA-A1I4-06 3 137787114 137787114 G A DZIP1L Missense_Mutation p.P571S 0.26 tolerated(0.72) benign(0.014) TCGA-DA-A1I4-06 3 14239547 14239547 G A LSM3 Silent p.R80R 0.21 TCGA-DA-A1I4-06 3 14526519 14526519 C T SLC6A6 3'UTR 0.46 TCGA-DA-A1I4-06 3 147108847 147108847 G A ZIC4 Missense_Mutation p.P342L 0.33 deleterious(0.02) benign(0.189) TCGA-DA-A1I4-06 3 150931772 150931772 G A P2RY14 Silent p.F111F 0.26 TCGA-DA-A1I4-06 3 151165605 151165605 G A IGSF10 Missense_Mutation p.R722W 0.24 deleterious(0.03) benign(0.012) TCGA-DA-A1I4-06 3 166960418 166960418 C T ZBBX Silent p.K756K 0.21 TCGA-DA-A1I4-06 3 186954073 186954073 G A MASP1 Missense_Mutation p.S529L 0.21 tolerated(0.26) benign(0.002) TCGA-DA-A1I4-06 3 192125997 192125997 C T FGF12 Missense_Mutation p.A6T 0.32 deleterious(0) probably_damaging(0.987) TCGA-DA-A1I4-06 3 195493597 195493597 G A MUC4 Missense_Mutation p.P4519S 0.30 benign(0.286) TCGA-DA-A1I4-06 3 2787249 2787249 C T CNTN4 Missense_Mutation p.R76C 0.22 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I4-06 3 39226585 39226585 T C XIRP1 Missense_Mutation p.E1451G 0.23 tolerated(0.16) benign(0.001) TCGA-DA-A1I4-06 3 42680879 42680879 C T NKTR Missense_Mutation p.P1228L 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DA-A1I4-06 3 44700266 44700266 C T ZNF35 Silent p.I137I 0.25 TCGA-DA-A1I4-06 3 48415089 48415089 G A FBXW12 Silent p.L60L 0.16 TCGA-DA-A1I4-06 3 48610350 48610350 G A COL7A1 Missense_Mutation p.P2259L 0.30 probably_damaging(0.998) TCGA-DA-A1I4-06 3 48610351 48610351 G A COL7A1 Missense_Mutation p.P2259S 0.29 probably_damaging(0.98) TCGA-DA-A1I4-06 3 51440680 51440680 G A VPRBP Silent p.F1025F 0.31 TCGA-DA-A1I4-06 3 51928965 51928965 A T IQCF1 Missense_Mutation p.L187M 0.34 tolerated(0.08) probably_damaging(0.981) TCGA-DA-A1I4-06 4 126239235 126239235 C T FAT4 Nonsense_Mutation p.Q557* 0.46 TCGA-DA-A1I4-06 4 126372503 126372503 C T FAT4 Silent p.I3444I 0.32 TCGA-DA-A1I4-06 4 147204418 147204418 C T SLC10A7 Splice_Site p.X258_splice 0.26 TCGA-DA-A1I4-06 4 147830395 147830395 C T TTC29 Silent p.R61R 0.20 TCGA-DA-A1I4-06 4 155312345 155312345 C T DCHS2 Silent p.V35V 0.25 TCGA-DA-A1I4-06 4 155486961 155486961 G A FGB Missense_Mutation p.G39D 0.18 tolerated_low_confidence(0.65) benign(0.002) TCGA-DA-A1I4-06 4 156632310 156632310 C T GUCY1A3 Silent p.I331I 0.27 TCGA-DA-A1I4-06 4 169354261 169354261 A T DDX60L Missense_Mutation p.S434T 0.30 tolerated(0.08) benign(0.086) TCGA-DA-A1I4-06 4 175577931 175577931 G A GLRA3 Missense_Mutation p.A360V 0.52 tolerated(0.36) benign(0.002) TCGA-DA-A1I4-06 4 187074920 187074921 AG - FAM149A Frame_Shift_Del 0.22 TCGA-DA-A1I4-06 4 23797354 23797354 C T PPARGC1A 3'UTR 0.16 TCGA-DA-A1I4-06 4 3478206 3478206 C T DOK7 Missense_Mutation p.L157F 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 4 38828821 38828821 C T TLR6 Silent p.R758R 0.25 TCGA-DA-A1I4-06 4 41747907 41747907 C T PHOX2B Missense_Mutation p.G288R 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-DA-A1I4-06 4 4322648 4322648 C T ZBTB49 Missense_Mutation p.H635Y 0.26 deleterious(0.04) benign(0.153) TCGA-DA-A1I4-06 4 71503529 71503529 G A ENAM Missense_Mutation p.G186E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 4 71510396 71510396 G A ENAM Missense_Mutation p.D1085N 0.20 deleterious(0.02) benign(0.386) TCGA-DA-A1I4-06 4 85695995 85695995 G A WDFY3 Missense_Mutation p.P1578S 0.29 tolerated(0.06) benign(0.014) TCGA-DA-A1I4-06 4 85724537 85724537 G C WDFY3 Missense_Mutation p.S838C 0.15 deleterious(0.03) benign(0.01) TCGA-DA-A1I4-06 4 94436522 94436522 C T GRID2 Missense_Mutation p.S718L 0.22 tolerated(0.41) benign(0.004) TCGA-DA-A1I4-06 5 111066668 111066668 C T NREP Missense_Mutation p.G97S 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-DA-A1I4-06 5 111066669 111066669 C T NREP Silent p.L96L 0.35 TCGA-DA-A1I4-06 5 121786472 121786472 G A SNCAIP Missense_Mutation p.D644N 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1I4-06 5 122714084 122714084 T A CEP120 Missense_Mutation p.K714N 0.28 deleterious(0.01) benign(0.066) TCGA-DA-A1I4-06 5 131054747 131054747 A G FNIP1 Silent p.P154P 0.25 TCGA-DA-A1I4-06 5 132038599 132038599 C T KIF3A Missense_Mutation p.R515H 0.25 tolerated(0.18) benign(0.092) TCGA-DA-A1I4-06 5 13931251 13931251 C T DNAH5 Missense_Mutation p.E54K 0.22 benign(0.418) TCGA-DA-A1I4-06 5 140431950 140431950 G A PCDHB1 Missense_Mutation p.G299R 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 5 140431951 140431951 G A PCDHB1 Missense_Mutation p.G299E 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 5 140502954 140502954 C T PCDHB4 Silent p.F458F 0.26 TCGA-DA-A1I4-06 5 140616248 140616248 T C PCDHB18 RNA 0.30 TCGA-DA-A1I4-06 5 140720785 140720785 C T PCDHGA2 Silent p.F749F 0.23 TCGA-DA-A1I4-06 5 140762923 140762923 C T PCDHGA7 Missense_Mutation p.P153S 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.612) TCGA-DA-A1I4-06 5 145883447 145883447 C T TCERG1 Nonsense_Mutation p.R870* 0.23 TCGA-DA-A1I4-06 5 153144012 153144012 C T GRIA1 Silent p.I624I 0.24 TCGA-DA-A1I4-06 5 156349165 156349165 G A TIMD4 Silent p.I319I 0.28 TCGA-DA-A1I4-06 5 24537654 24537654 C T CDH10 Missense_Mutation p.E121K 0.27 tolerated(0.19) probably_damaging(0.933) TCGA-DA-A1I4-06 5 50091235 50091235 C T PARP8 Missense_Mutation p.S471L 0.25 tolerated_low_confidence(0.23) benign(0.027) TCGA-DA-A1I4-06 5 89938699 89938699 C T GPR98 Silent p.I798I 0.22 TCGA-DA-A1I4-06 5 89971227 89971227 G A GPR98 Missense_Mutation p.V1760M 0.23 possibly_damaging(0.661) TCGA-DA-A1I4-06 6 131948547 131948547 C T MED23 Missense_Mutation p.G50S 0.36 tolerated(0.73) benign(0.003) TCGA-DA-A1I4-06 6 13642741 13642741 C T RANBP9 Missense_Mutation p.E399K 0.36 deleterious(0.01) possibly_damaging(0.76) TCGA-DA-A1I4-06 6 150719294 150719294 C T IYD 3'UTR 0.44 TCGA-DA-A1I4-06 6 169628377 169628377 C T THBS2 Splice_Site p.X754_splice 0.24 TCGA-DA-A1I4-06 6 31611729 31611729 G T BAG6 Missense_Mutation p.A535D 0.15 deleterious(0) benign(0.086) TCGA-DA-A1I4-06 6 31760655 31760655 G A VARS Silent p.A180A 0.21 TCGA-DA-A1I4-06 6 32187406 32187406 C T NOTCH4 Silent p.L491L 0.22 TCGA-DA-A1I4-06 6 46669629 46669629 G A TDRD6 3'UTR 0.50 TCGA-DA-A1I4-06 6 53787706 53787706 C T LRRC1 3'UTR 0.16 TCGA-DA-A1I4-06 6 7379053 7379053 T A CAGE1 Nonsense_Mutation p.K162* 0.33 TCGA-DA-A1I4-06 6 75833060 75833060 G A COL12A1 Missense_Mutation p.P2311L 0.31 probably_damaging(0.999) TCGA-DA-A1I4-06 6 84234103 84234103 G A PRSS35 Missense_Mutation p.D315N 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 6 96651676 96651676 C T FUT9 Silent p.I215I 0.41 TCGA-DA-A1I4-06 7 100211216 100211216 C T MOSPD3 Missense_Mutation p.S133F 0.14 deleterious(0) possibly_damaging(0.653) TCGA-DA-A1I4-06 7 100211217 100211217 C T MOSPD3 Silent p.S133S 0.14 TCGA-DA-A1I4-06 7 100861399 100861399 G A ZNHIT1 5'UTR 0.39 TCGA-DA-A1I4-06 7 116411677 116411677 C T MET Silent p.F970F 0.19 TCGA-DA-A1I4-06 7 128489437 128489437 G A FLNC Silent p.V1668V 0.22 TCGA-DA-A1I4-06 7 134891950 134891950 G A WDR91 Silent p.V172V 0.23 TCGA-DA-A1I4-06 7 134896313 134896313 G A WDR91 5'Flank 0.60 TCGA-DA-A1I4-06 7 136700134 136700134 G A CHRM2 Silent p.G174G 0.47 TCGA-DA-A1I4-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I4-06 7 23236306 23236306 C T NUPL2 Missense_Mutation p.S177F 0.20 deleterious(0.02) probably_damaging(0.915) TCGA-DA-A1I4-06 7 24703288 24703288 C T MPP6 Missense_Mutation p.S244F 0.21 deleterious(0.02) possibly_damaging(0.58) TCGA-DA-A1I4-06 7 2752501 2752501 G A AMZ1 Missense_Mutation p.E496K 0.45 deleterious_low_confidence(0.02) benign(0.368) TCGA-DA-A1I4-06 7 30695560 30695560 G A CRHR2 Silent p.S327S 0.46 TCGA-DA-A1I4-06 7 37954014 37954014 C T SFRP4 Missense_Mutation p.E163K 0.46 tolerated(0.21) benign(0.212) TCGA-DA-A1I4-06 7 44190560 44190560 C T GCK Missense_Mutation p.D161N 0.42 deleterious(0.04) possibly_damaging(0.818) TCGA-DA-A1I4-06 7 44425540 44425540 G A NUDCD3 3'UTR 0.21 TCGA-DA-A1I4-06 7 45223069 45223069 G A RAMP3 3'UTR 0.45 TCGA-DA-A1I4-06 7 5105318 5105318 C T RBAK 3'UTR 0.29 TCGA-DA-A1I4-06 7 64639749 64639749 C T INTS4L1 RNA 0.18 TCGA-DA-A1I4-06 7 65447032 65447048 AGCTCCAGAGGCCGTCC - GUSB Frame_Shift_Del p.D42Pfs*6 0.45 TCGA-DA-A1I4-06 7 73814775 73814775 C T CLIP2 Silent p.L986L 0.28 TCGA-DA-A1I4-06 7 79764527 79764527 G C GNAI1 Missense_Mutation p.K17N 0.09 tolerated(0.05) benign(0.124) TCGA-DA-A1I4-06 7 81388078 81388078 G A HGF Silent p.F99F 0.42 TCGA-DA-A1I4-06 7 88963644 88963644 G A ZNF804B Missense_Mutation p.D450N 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I4-06 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.36 TCGA-DA-A1I4-06 8 11996046 11996046 G A USP17L2 Missense_Mutation p.P75L 0.07 tolerated(0.22) probably_damaging(0.999) TCGA-DA-A1I4-06 8 125058037 125058037 G A FER1L6 Nonsense_Mutation p.W873* 0.22 TCGA-DA-A1I4-06 8 130789639 130789639 G A GSDMC Silent p.I65I 0.20 TCGA-DA-A1I4-06 8 145625048 145625048 G A CPSF1 Missense_Mutation p.S391F 0.32 deleterious(0) probably_damaging(0.956) TCGA-DA-A1I4-06 8 19363171 19363171 C T CSGALNACT1 Missense_Mutation p.A59T 0.13 tolerated(0.13) possibly_damaging(0.844) TCGA-DA-A1I4-06 8 23167234 23167234 G A LOXL2 Silent p.S609S 0.42 TCGA-DA-A1I4-06 8 24197052 24197052 G A ADAM28 Silent p.V547V 0.25 TCGA-DA-A1I4-06 8 38699874 38699874 C T TACC1 Missense_Mutation p.A677V 0.14 deleterious(0) probably_damaging(0.986) TCGA-DA-A1I4-06 8 38699875 38699875 C T TACC1 Silent p.A677A 0.14 TCGA-DA-A1I4-06 8 41552191 41552191 G A ANK1 Silent p.S1123S 0.31 TCGA-DA-A1I4-06 8 48353042 48353042 C T SPIDR Silent p.T345T 0.23 TCGA-DA-A1I4-06 8 55538757 55538757 G A RP1 Missense_Mutation p.G772E 0.30 tolerated(0.1) benign(0.423) TCGA-DA-A1I4-06 8 63659614 63659614 G A NKAIN3 Missense_Mutation p.V133I 0.19 tolerated(1) benign(0.048) TCGA-DA-A1I4-06 8 99208211 99208211 G A NIPAL2 Silent p.F301F 0.12 TCGA-DA-A1I4-06 9 134471739 134471739 G A RAPGEF1 Missense_Mutation p.R711C 0.42 deleterious(0) probably_damaging(0.969) TCGA-DA-A1I4-06 9 134471740 134471740 G A RAPGEF1 Silent p.V710V 0.44 TCGA-DA-A1I4-06 9 135559040 135559040 C T GTF3C4 Missense_Mutation p.R759C 0.37 tolerated(0.2) benign(0.007) TCGA-DA-A1I4-06 9 35733137 35733137 C T CREB3 Silent p.L92L 0.53 TCGA-DA-A1I4-06 9 82319812 82319812 C T TLE4 Missense_Mutation p.R242C 0.45 tolerated(0.06) possibly_damaging(0.582) TCGA-DA-A1I4-06 X 110494267 110494267 G A CAPN6 Missense_Mutation p.P346S 0.51 tolerated(1) benign(0) TCGA-DA-A1I4-06 X 114245315 114245315 G A IL13RA2 Missense_Mutation p.P200S 0.49 tolerated(0.28) benign(0.072) TCGA-DA-A1I4-06 X 142795398 142795398 C T SPANXN2 Missense_Mutation p.G94R 0.55 tolerated(0.16) unknown(0) TCGA-DA-A1I4-06 X 154722325 154722325 C T TMLHE Intron 0.21 TCGA-DA-A1I4-06 X 154722326 154722326 T A TMLHE Intron 0.25 TCGA-DA-A1I4-06 X 3240718 3240718 G T MXRA5 Missense_Mutation p.P1003Q 0.49 deleterious(0) benign(0.401) TCGA-DA-A1I4-06 X 37641395 37641395 G A CYBB Missense_Mutation p.D34N 0.38 tolerated(0.12) benign(0) TCGA-DA-A1I4-06 X 78010310 78010310 C T LPAR4 5'UTR 0.54 TCGA-DA-A1I5-06 10 118137974 118137974 G A CCDC172 Missense_Mutation p.M231I 0.44 tolerated(0.21) benign(0.012) TCGA-DA-A1I5-06 10 118365033 118365033 G A PNLIPRP1 Silent p.K436K 0.31 TCGA-DA-A1I5-06 10 135099033 135099033 G A TUBGCP2 Silent p.L636L 0.23 TCGA-DA-A1I5-06 10 15639298 15639298 C T ITGA8 Missense_Mutation p.G707R 0.40 tolerated(0.21) benign(0.278) TCGA-DA-A1I5-06 10 34400331 34400331 G A PARD3 Silent p.V1279V 0.34 TCGA-DA-A1I5-06 10 49386119 49386119 C T FRMPD2 Missense_Mutation p.E956K 0.19 tolerated(0.19) probably_damaging(0.994) TCGA-DA-A1I5-06 10 50122162 50122162 G A LRRC18 Silent p.I13I 0.37 TCGA-DA-A1I5-06 10 61443926 61443926 C T SLC16A9 Missense_Mutation p.D42N 0.35 tolerated(0.2) benign(0.159) TCGA-DA-A1I5-06 10 61830452 61830452 G T ANK3 Missense_Mutation p.S3396Y 0.44 probably_damaging(0.979) TCGA-DA-A1I5-06 10 61868658 61868658 G A ANK3 Missense_Mutation p.P1035S 0.41 probably_damaging(0.999) TCGA-DA-A1I5-06 10 69752044 69752044 G A HERC4 Missense_Mutation p.P395S 0.44 tolerated(0.85) benign(0.003) TCGA-DA-A1I5-06 10 96741125 96741125 A T CYP2C9 Nonsense_Mutation p.K383* 0.25 TCGA-DA-A1I5-06 11 101946783 101946783 T C C11orf70 Intron 0.33 TCGA-DA-A1I5-06 11 102710983 102710983 C T MMP3 Missense_Mutation p.G264E 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1I5-06 11 10500204 10500204 C T AMPD3 Missense_Mutation p.S127F 0.40 tolerated(0.05) benign(0.135) TCGA-DA-A1I5-06 11 105483100 105483100 T C GRIA4 Silent p.F62F 0.41 TCGA-DA-A1I5-06 11 107965615 107965615 T A CUL5 Silent p.P548P 0.13 TCGA-DA-A1I5-06 11 108213955 108213955 C T ATM Missense_Mutation p.P2759S 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 11 108594053 108594053 C T DDX10 Missense_Mutation p.T610I 0.44 tolerated(0.16) benign(0.002) TCGA-DA-A1I5-06 11 117779432 117779432 C T TMPRSS13 Missense_Mutation p.E393K 0.21 tolerated(0.09) benign(0.036) TCGA-DA-A1I5-06 11 118076638 118076638 C T AMICA1 Missense_Mutation p.V165M 0.28 tolerated(0.47) benign(0.053) TCGA-DA-A1I5-06 11 118390453 118390453 C T KMT2A Missense_Mutation p.A3756V 0.28 benign(0.437) TCGA-DA-A1I5-06 11 121008698 121008698 C T TECTA Silent p.I1170I 0.30 TCGA-DA-A1I5-06 11 121424794 121424794 C T SORL1 Silent p.S805S 0.47 TCGA-DA-A1I5-06 11 123887211 123887211 G A OR10G4 Silent p.R310R 0.39 TCGA-DA-A1I5-06 11 123901097 123901097 C T OR10G8 Silent p.F256F 0.10 TCGA-DA-A1I5-06 11 128709568 128709568 G A KCNJ1 Silent p.L210L 0.20 TCGA-DA-A1I5-06 11 130332616 130332616 G A ADAMTS15 Missense_Mutation p.E495K 0.27 tolerated(0.36) benign(0.006) TCGA-DA-A1I5-06 11 17542914 17542914 C T USH1C Missense_Mutation p.R355K 0.34 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-DA-A1I5-06 11 18955401 18955401 C T MRGPRX1 Missense_Mutation p.E311K 0.13 tolerated(0.09) benign(0.175) TCGA-DA-A1I5-06 11 19955287 19955287 G A NAV2 Silent p.E522E 0.14 TCGA-DA-A1I5-06 11 408110 408110 C T SIGIRR Silent p.Q101Q 0.15 TCGA-DA-A1I5-06 11 4567252 4567252 C T OR52M1 Silent p.L278L 0.19 TCGA-DA-A1I5-06 11 46750326 46750326 C T F2 Missense_Mutation p.P471S 0.16 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I5-06 11 4842792 4842792 C T OR51F2 Silent p.I59I 0.09 TCGA-DA-A1I5-06 11 5510608 5510608 C T OR52D1 Silent p.I224I 0.16 TCGA-DA-A1I5-06 11 55110948 55110948 C T OR4A16 Missense_Mutation p.S91F 0.39 deleterious_low_confidence(0.01) benign(0.295) TCGA-DA-A1I5-06 11 55418857 55418857 C T OR4S2 Silent p.L160L 0.64 TCGA-DA-A1I5-06 11 55587319 55587319 T A OR5D18 Missense_Mutation p.F72I 0.34 tolerated(0.14) benign(0.099) TCGA-DA-A1I5-06 11 55761196 55761196 C T OR5F1 Silent p.A302A 0.35 TCGA-DA-A1I5-06 11 56258182 56258182 G T OR5M8 Missense_Mutation p.P222H 0.29 tolerated(0.17) possibly_damaging(0.617) TCGA-DA-A1I5-06 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.12 TCGA-DA-A1I5-06 11 58170745 58170745 C T OR5B3 Silent p.L46L 0.45 TCGA-DA-A1I5-06 11 62124474 62124474 C T ASRGL1 Silent p.L117L 0.33 TCGA-DA-A1I5-06 11 62556867 62556867 A T TMEM179B Missense_Mutation p.N130Y 0.28 deleterious(0.03) benign(0.404) TCGA-DA-A1I5-06 11 62760988 62760988 C T SLC22A8 Silent p.G479G 0.17 TCGA-DA-A1I5-06 11 67059550 67059550 A T ANKRD13D Silent p.T210T 0.28 TCGA-DA-A1I5-06 11 68153959 68153959 C T LRP5 Silent p.I397I 0.12 TCGA-DA-A1I5-06 11 6816899 6816899 A G OR6A2 Missense_Mutation p.V14A 0.21 deleterious(0.01) benign(0.387) TCGA-DA-A1I5-06 11 6977047 6977047 G A ZNF215 Nonsense_Mutation p.W280* 0.37 TCGA-DA-A1I5-06 11 7063998 7063998 C T NLRP14 Silent p.I247I 0.25 TCGA-DA-A1I5-06 11 89911136 89911136 G A NAALAD2 Missense_Mutation p.R570Q 0.24 tolerated(0.34) probably_damaging(1) TCGA-DA-A1I5-06 11 92531999 92531999 C T FAT3 Silent p.T1940T 0.34 TCGA-DA-A1I5-06 12 109186493 109186493 G A SSH1 Missense_Mutation p.P488S 0.32 tolerated(0.64) benign(0.007) TCGA-DA-A1I5-06 12 109186494 109186494 G A SSH1 Silent p.T487T 0.32 TCGA-DA-A1I5-06 12 111089247 111089247 G A HVCN1 Missense_Mutation p.H140Y 0.40 deleterious(0) probably_damaging(0.959) TCGA-DA-A1I5-06 12 112182825 112182825 C T ACAD10 Missense_Mutation p.S729F 0.30 tolerated(0.65) benign(0.423) TCGA-DA-A1I5-06 12 116434479 116434479 G T MED13L Nonsense_Mutation p.S933* 0.18 TCGA-DA-A1I5-06 12 121603181 121603181 C G P2RX7 Silent p.A185A 0.14 TCGA-DA-A1I5-06 12 123034322 123034322 C T KNTC1 Missense_Mutation p.L333F 0.27 tolerated(0.06) probably_damaging(0.986) TCGA-DA-A1I5-06 12 123335413 123335413 C T HIP1R Missense_Mutation p.T157I 0.22 deleterious(0) probably_damaging(0.925) TCGA-DA-A1I5-06 12 123424770 123424770 C T ABCB9 Missense_Mutation p.G544E 0.11 deleterious(0) probably_damaging(0.992) TCGA-DA-A1I5-06 12 124403268 124403268 G A DNAH10 Missense_Mutation p.D3642N 0.33 benign(0.081) TCGA-DA-A1I5-06 12 126128723 126128723 C T TMEM132B Silent p.F508F 0.38 TCGA-DA-A1I5-06 12 13061445 13061445 G A GPRC5A Missense_Mutation p.G88R 0.27 tolerated(0.54) benign(0) TCGA-DA-A1I5-06 12 133226033 133226033 G A POLE Silent p.A1288A 0.11 TCGA-DA-A1I5-06 12 133357462 133357462 G A GOLGA3 Silent p.R1168R 0.23 TCGA-DA-A1I5-06 12 15661550 15661550 A C PTPRO Missense_Mutation p.H438P 0.36 tolerated(0.1) benign(0.173) TCGA-DA-A1I5-06 12 18847966 18847966 C T PLCZ1 Missense_Mutation p.G447R 0.20 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 12 18891911 18891911 C T CAPZA3 Nonsense_Mutation p.Q237* 0.32 TCGA-DA-A1I5-06 12 20874884 20874885 TC A SLCO1C1 Frame_Shift_Del p.S308Ifs*12 0.14 TCGA-DA-A1I5-06 12 21036450 21036450 G A SLCO1B3 Silent p.R532R 0.34 TCGA-DA-A1I5-06 12 344336 344336 G A SLC6A13 Nonsense_Mutation p.R251* 0.38 TCGA-DA-A1I5-06 12 38714839 38714839 C T ALG10B Missense_Mutation p.R416C 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 12 44913944 44913944 C T NELL2 Silent p.E798E 0.56 TCGA-DA-A1I5-06 12 4920465 4920465 A T KCNA6 Missense_Mutation p.M420L 0.32 deleterious(0.02) probably_damaging(0.941) TCGA-DA-A1I5-06 12 4920466 4920466 T G KCNA6 Missense_Mutation p.M420R 0.32 deleterious(0) probably_damaging(0.993) TCGA-DA-A1I5-06 12 50524370 50524370 C T CERS5 Silent p.R379R 0.42 TCGA-DA-A1I5-06 12 52881529 52881529 G A KRT6A Missense_Mutation p.S557F 0.28 tolerated(0.06) unknown(0) TCGA-DA-A1I5-06 12 53470996 53470996 G A SPRYD3 Silent p.L25L 0.25 TCGA-DA-A1I5-06 12 53928439 53928439 A G ATF7 Missense_Mutation p.V136A 0.19 tolerated(0.29) benign(0.002) TCGA-DA-A1I5-06 12 54798666 54798666 C T ITGA5 Missense_Mutation p.G413E 0.25 deleterious(0) probably_damaging(0.993) TCGA-DA-A1I5-06 12 55614962 55614962 G A OR10A7 Missense_Mutation p.D52N 0.29 tolerated(0.07) possibly_damaging(0.584) TCGA-DA-A1I5-06 12 5603469 5603469 C T NTF3 Missense_Mutation p.S43L 0.28 tolerated(0.09) possibly_damaging(0.885) TCGA-DA-A1I5-06 12 56490961 56490962 - G ERBB3 Frame_Shift_Ins p.A805Gfs*22 0.25 TCGA-DA-A1I5-06 12 56863405 56863405 C T SPRYD4 3'UTR 0.40 TCGA-DA-A1I5-06 12 6103617 6103617 G A VWF Missense_Mutation p.P2074S 0.25 tolerated(0.36) probably_damaging(0.96) TCGA-DA-A1I5-06 12 71029686 71029686 G A PTPRB Silent p.S72S 0.37 TCGA-DA-A1I5-06 12 72863634 72863634 C T TRHDE Missense_Mutation p.S426L 0.22 deleterious(0) benign(0.285) TCGA-DA-A1I5-06 12 7531810 7531810 C T CD163L1 Missense_Mutation p.G712E 0.35 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I5-06 12 93131202 93131202 G A PLEKHG7 5'UTR 0.25 TCGA-DA-A1I5-06 13 25433214 25433214 G A RNF17 Nonsense_Mutation p.W1229* 0.29 TCGA-DA-A1I5-06 13 36242646 36242646 C T NBEA Missense_Mutation p.H2914Y 0.50 tolerated(0.33) benign(0.004) TCGA-DA-A1I5-06 13 38225576 38225576 C T TRPC4 Nonsense_Mutation p.W635* 0.27 TCGA-DA-A1I5-06 13 99538816 99538816 G A DOCK9 Silent p.H702H 0.21 TCGA-DA-A1I5-06 14 20612775 20612775 T G OR4N5 Missense_Mutation p.V294G 0.38 deleterious(0) possibly_damaging(0.897) TCGA-DA-A1I5-06 14 22134212 22134212 G A OR4E2 Missense_Mutation p.V306I 0.36 tolerated(0.3) benign(0.002) TCGA-DA-A1I5-06 14 24677292 24677292 G A TSSK4 Silent p.E319E 0.33 TCGA-DA-A1I5-06 14 61446310 61446310 C T TRMT5 Silent p.R102R 0.33 TCGA-DA-A1I5-06 14 62245615 62245615 C T SNAPC1 Missense_Mutation p.S271L 0.30 deleterious(0.02) benign(0.272) TCGA-DA-A1I5-06 14 75052711 75052711 C T LTBP2 Missense_Mutation p.E226K 0.60 deleterious(0.05) probably_damaging(0.993) TCGA-DA-A1I5-06 14 79432748 79432748 G A NRXN3 Missense_Mutation p.G553R 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 15 101109526 101109526 G A LINS Missense_Mutation p.L731F 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 15 20495446 20495446 G A CHEK2P2 Intron 0.12 TCGA-DA-A1I5-06 15 20645802 20645802 G A HERC2P3 RNA 0.35 TCGA-DA-A1I5-06 15 20645838 20645838 G A HERC2P3 RNA 0.42 TCGA-DA-A1I5-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.17 deleterious(0.01) benign(0.037) TCGA-DA-A1I5-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.23 tolerated(0.26) probably_damaging(0.991) TCGA-DA-A1I5-06 15 25227215 25227215 C T SNRPN 3'Flank 0.34 TCGA-DA-A1I5-06 15 38643623 38643623 C T SPRED1 Nonsense_Mutation p.Q365* 0.30 TCGA-DA-A1I5-06 15 40557141 40557141 C T PAK6 Missense_Mutation p.P52L 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 15 41192378 41192378 G A VPS18 Silent p.E454E 0.25 TCGA-DA-A1I5-06 15 41482309 41482309 C T EXD1 Nonsense_Mutation p.W236* 0.38 TCGA-DA-A1I5-06 15 42437807 42437807 G A PLA2G4F Silent p.F582F 0.28 TCGA-DA-A1I5-06 15 42458803 42458803 G A VPS39 Silent p.L522L 0.16 TCGA-DA-A1I5-06 15 42619626 42619626 T A GANC Missense_Mutation p.F496I 0.26 possibly_damaging(0.842) TCGA-DA-A1I5-06 15 43363063 43363063 C T UBR1 Missense_Mutation p.V197M 0.29 tolerated(0.38) benign(0.194) TCGA-DA-A1I5-06 15 43620536 43620536 G A LCMT2 3'UTR 0.43 TCGA-DA-A1I5-06 15 44890914 44890914 T C SPG11 Silent p.R1269R 0.25 TCGA-DA-A1I5-06 15 49833925 49833925 C T FAM227B Missense_Mutation p.D276N 0.19 tolerated(0.05) possibly_damaging(0.462) TCGA-DA-A1I5-06 15 50215620 50215620 G A ATP8B4 Missense_Mutation p.P572S 0.26 tolerated(0.19) benign(0.055) TCGA-DA-A1I5-06 15 52356250 52356250 G T MAPK6 Nonsense_Mutation p.E407* 0.24 TCGA-DA-A1I5-06 15 52356254 52356254 A G MAPK6 Missense_Mutation p.K408R 0.24 tolerated(0.71) benign(0.031) TCGA-DA-A1I5-06 15 52681452 52681452 G A MYO5A Nonsense_Mutation p.Q551* 0.18 TCGA-DA-A1I5-06 15 54792317 54792317 G A UNC13C Missense_Mutation p.E1701K 0.31 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-DA-A1I5-06 15 67482846 67482846 C T SMAD3 Missense_Mutation p.P417L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 15 74337233 74337233 G A PML Missense_Mutation p.A845T 0.33 deleterious(0.01) possibly_damaging(0.642) TCGA-DA-A1I5-06 15 74368313 74368313 C T GOLGA6A Missense_Mutation p.R193K 0.16 tolerated(0.37) benign(0.006) TCGA-DA-A1I5-06 15 74467238 74467238 G A ISLR Silent p.L13L 0.25 TCGA-DA-A1I5-06 15 75310792 75310792 G A SCAMP5 Silent p.T143T 0.31 TCGA-DA-A1I5-06 15 99459195 99459195 C T IGF1R Missense_Mutation p.P611S 0.27 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I5-06 16 1395287 1395287 C T BAIAP3 Missense_Mutation p.P695S 0.26 tolerated(0.81) benign(0.097) TCGA-DA-A1I5-06 16 16215894 16215894 C T ABCC1 Silent p.V1151V 0.22 TCGA-DA-A1I5-06 16 21156507 21156507 G A DNAH3 Missense_Mutation p.S148L 0.33 tolerated(0.4) benign(0) TCGA-DA-A1I5-06 16 24231416 24231416 G A PRKCB 3'UTR 0.39 TCGA-DA-A1I5-06 16 27078315 27078315 C T C16orf82 RNA 0.33 TCGA-DA-A1I5-06 16 28109856 28109856 G A XPO6 3'UTR 0.25 TCGA-DA-A1I5-06 16 28950019 28950019 G A CD19 Missense_Mutation p.M504I 0.28 deleterious(0) possibly_damaging(0.584) TCGA-DA-A1I5-06 16 29857188 29857188 G A MVP Missense_Mutation p.E676K 0.38 tolerated(0.06) probably_damaging(0.971) TCGA-DA-A1I5-06 16 29912595 29912595 A G ASPHD1 Silent p.Q101Q 0.24 TCGA-DA-A1I5-06 16 29912596 29912596 G A ASPHD1 Missense_Mutation p.D102N 0.26 tolerated(0.17) benign(0.135) TCGA-DA-A1I5-06 16 5094340 5094340 C T C16orf89 3'UTR 0.21 TCGA-DA-A1I5-06 16 51172871 51172871 C T SALL1 Missense_Mutation p.E1088K 0.30 deleterious(0) possibly_damaging(0.488) TCGA-DA-A1I5-06 16 51175508 51175508 G A SALL1 Nonsense_Mutation p.Q209* 0.31 TCGA-DA-A1I5-06 16 66946411 66946411 G A CDH16 Missense_Mutation p.S452F 0.20 deleterious(0.02) possibly_damaging(0.903) TCGA-DA-A1I5-06 16 67327935 67327935 C T KCTD19 Missense_Mutation p.R577Q 0.36 deleterious(0.03) benign(0.004) TCGA-DA-A1I5-06 16 67865769 67865769 G A CENPT Silent p.L137L 0.45 TCGA-DA-A1I5-06 16 69154546 69154546 G A CHTF8 Missense_Mutation p.P50S 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 16 69154547 69154547 G A CHTF8 Silent p.I49I 0.35 TCGA-DA-A1I5-06 16 706315 706315 C T WDR90 Silent p.P660P 0.22 TCGA-DA-A1I5-06 16 70989399 70989399 C T HYDIN Silent p.L2065L 0.28 TCGA-DA-A1I5-06 16 71610089 71610089 G A TAT Missense_Mutation p.S77F 0.29 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 16 72993437 72993437 G A ZFHX3 Missense_Mutation p.S203F 0.23 probably_damaging(0.962) TCGA-DA-A1I5-06 16 74706258 74706258 C T MLKL 3'UTR 0.39 TCGA-DA-A1I5-06 16 86544358 86544358 C T FOXF1 Silent p.I61I 0.30 TCGA-DA-A1I5-06 16 88643603 88643603 G A ZC3H18 Silent p.S24S 0.31 TCGA-DA-A1I5-06 16 88643604 88643604 G A ZC3H18 Missense_Mutation p.D25N 0.31 deleterious_low_confidence(0.04) unknown(0) TCGA-DA-A1I5-06 16 88967966 88967966 G A CBFA2T3 Missense_Mutation p.P84S 0.28 tolerated_low_confidence(0.12) benign(0.299) TCGA-DA-A1I5-06 17 10552993 10552993 G A MYH3 Silent p.S181S 0.41 TCGA-DA-A1I5-06 17 26669304 26669304 G A TNFAIP1 Missense_Mutation p.E184K 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1I5-06 17 29283285 29283285 T C ADAP2 Silent p.F303F 0.18 TCGA-DA-A1I5-06 17 29654621 29654621 C T NF1 Silent p.I1791I 0.12 TCGA-DA-A1I5-06 17 36091655 36091655 G A HNF1B Silent p.L326L 0.35 TCGA-DA-A1I5-06 17 37571584 37571584 C A MED1 Missense_Mutation p.G436W 0.09 deleterious(0) possibly_damaging(0.864) TCGA-DA-A1I5-06 17 3854588 3854588 G A ATP2A3 Silent p.I140I 0.36 TCGA-DA-A1I5-06 17 38978776 38978776 C T KRT10 Missense_Mutation p.G21E 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-DA-A1I5-06 17 3919720 3919720 A C ZZEF1 Missense_Mutation p.L2681R 0.17 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 17 39724582 39724582 A C KRT9 Missense_Mutation p.L409R 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 17 42336949 42336949 C T SLC4A1 Missense_Mutation p.G204R 0.20 tolerated(0.48) benign(0.039) TCGA-DA-A1I5-06 17 45892672 45892672 G A OSBPL7 Missense_Mutation p.S389L 0.37 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I5-06 17 4789256 4789256 C T MINK1 Silent p.A230A 0.29 TCGA-DA-A1I5-06 17 5048150 5048150 G A USP6 Missense_Mutation p.A662T 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DA-A1I5-06 17 57125123 57125123 G A TRIM37 Nonsense_Mutation p.Q530* 0.19 TCGA-DA-A1I5-06 17 60469297 60469297 A C EFCAB3 Missense_Mutation p.Y141S 0.35 tolerated(0.11) possibly_damaging(0.603) TCGA-DA-A1I5-06 17 7339152 7339152 C T TMEM102 Intron 0.26 TCGA-DA-A1I5-06 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.17 deleterious(0) probably_damaging(0.982) TCGA-DA-A1I5-06 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.26 TCGA-DA-A1I5-06 17 80708655 80708660 GTCCCC - FN3K 3'UTR 0.36 TCGA-DA-A1I5-06 18 22056862 22056862 C T HRH4 Missense_Mutation p.S170L 0.25 tolerated(0.6) benign(0.022) TCGA-DA-A1I5-06 18 28710596 28710596 C T DSC1 Missense_Mutation p.G856S 0.26 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 18 29046579 29046579 G A DSG3 Missense_Mutation p.D500N 0.27 tolerated(0.25) benign(0.002) TCGA-DA-A1I5-06 18 30992029 30992029 G A CCDC178 Silent p.S8S 0.29 TCGA-DA-A1I5-06 18 47402197 47402197 C T MYO5B Missense_Mutation p.E1133K 0.24 tolerated(0.12) benign(0.26) TCGA-DA-A1I5-06 18 50731625 50731625 C T DCC Missense_Mutation p.S538F 0.26 deleterious(0) possibly_damaging(0.838) TCGA-DA-A1I5-06 18 55020146 55020146 G A ST8SIA3 Silent p.L23L 0.24 TCGA-DA-A1I5-06 18 56390461 56390461 C T MALT1 Silent p.L400L 0.21 TCGA-DA-A1I5-06 19 10252726 10252726 G A DNMT1 Missense_Mutation p.P1096L 0.14 tolerated(0.18) benign(0.063) TCGA-DA-A1I5-06 19 10943869 10943869 C T TMED1 Silent p.R162R 0.46 TCGA-DA-A1I5-06 19 15538022 15538022 T G WIZ Silent p.P284P 0.16 TCGA-DA-A1I5-06 19 15728888 15728888 G A AD000091.2 5'Flank 0.16 TCGA-DA-A1I5-06 19 15905608 15905608 C T OR10H5 Silent p.V250V 0.20 TCGA-DA-A1I5-06 19 16488050 16488050 G A EPS15L1 Missense_Mutation p.P755S 0.18 deleterious(0.02) benign(0.169) TCGA-DA-A1I5-06 19 16859961 16859961 G A NWD1 Missense_Mutation p.E170K 0.20 deleterious(0) probably_damaging(0.992) TCGA-DA-A1I5-06 19 17085952 17085952 G A CPAMD8 Silent p.F722F 0.33 TCGA-DA-A1I5-06 19 2987153 2987153 G A TLE6 Nonsense_Mutation p.W153* 0.43 TCGA-DA-A1I5-06 19 30936347 30936347 G A ZNF536 Missense_Mutation p.M626I 0.17 tolerated(0.12) benign(0) TCGA-DA-A1I5-06 19 36046380 36046380 G A ATP4A Nonsense_Mutation p.Q707* 0.39 TCGA-DA-A1I5-06 19 36321826 36321826 G A NPHS1 Missense_Mutation p.P1172S 0.22 tolerated(0.09) benign(0.035) TCGA-DA-A1I5-06 19 40095889 40095889 G A LGALS13 Missense_Mutation p.R55Q 0.11 tolerated(0.35) benign(0.446) TCGA-DA-A1I5-06 19 40408704 40408704 G A FCGBP Missense_Mutation p.P1379S 0.38 probably_damaging(1) TCGA-DA-A1I5-06 19 40719021 40719021 C T MAP3K10 Missense_Mutation p.S588L 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1I5-06 19 40902141 40902141 G A PRX Silent p.L706L 0.15 TCGA-DA-A1I5-06 19 41132981 41132981 C T LTBP4 Missense_Mutation p.P1429S 0.35 tolerated(0.13) benign(0.014) TCGA-DA-A1I5-06 19 41289901 41289901 C T RAB4B Silent p.I117I 0.14 TCGA-DA-A1I5-06 19 42479928 42479928 C G ATP1A3 Missense_Mutation p.G719R 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 19 43262160 43262160 G A PSG8 Missense_Mutation p.L235F 0.16 deleterious(0.01) benign(0.14) TCGA-DA-A1I5-06 19 44564992 44564992 C T ZNF223 Missense_Mutation p.S78L 0.35 tolerated(0.22) benign(0.014) TCGA-DA-A1I5-06 19 46973464 46973464 C T PNMAL1 Missense_Mutation p.G277S 0.19 tolerated(0.09) probably_damaging(0.931) TCGA-DA-A1I5-06 19 48879000 48879000 C T SYNGR4 Silent p.I154I 0.26 TCGA-DA-A1I5-06 19 48968101 48968101 C T KCNJ14 3'UTR 0.38 TCGA-DA-A1I5-06 19 49507615 49507615 G T RUVBL2 Missense_Mutation p.A69S 0.26 tolerated(0.11) benign(0.127) TCGA-DA-A1I5-06 19 51771841 51771841 G A SIGLECL1 Missense_Mutation p.R195Q 0.15 tolerated_low_confidence(0.24) benign(0.005) TCGA-DA-A1I5-06 19 54200849 54200849 C T MIR525 RNA 0.19 TCGA-DA-A1I5-06 19 54377760 54377760 C T MYADM 3'UTR 0.38 TCGA-DA-A1I5-06 19 54561647 54561647 C T VSTM1 Missense_Mutation p.D90N 0.17 tolerated(0.08) possibly_damaging(0.658) TCGA-DA-A1I5-06 19 54822811 54822811 G A LILRA5 Silent p.F195F 0.19 TCGA-DA-A1I5-06 19 56369333 56369333 G A NLRP4 Missense_Mutation p.E192K 0.29 deleterious(0.05) probably_damaging(0.919) TCGA-DA-A1I5-06 19 56466752 56466752 C T NLRP8 Missense_Mutation p.S443F 0.13 deleterious(0.05) benign(0.005) TCGA-DA-A1I5-06 19 57335917 57335917 C T PEG3 Missense_Mutation p.G36E 0.30 deleterious(0.02) benign(0.444) TCGA-DA-A1I5-06 19 6040210 6040210 G A RFX2 Silent p.A101A 0.25 TCGA-DA-A1I5-06 19 757679 757679 G A MISP Missense_Mutation p.V245I 0.37 tolerated(0.12) benign(0.046) TCGA-DA-A1I5-06 19 758513 758513 C T MISP Missense_Mutation p.P523S 0.26 tolerated(0.24) benign(0.036) TCGA-DA-A1I5-06 19 7830105 7830105 C A CLEC4M Silent p.L55L 0.27 TCGA-DA-A1I5-06 19 9047932 9047932 C T MUC16 Silent p.E11233E 0.33 TCGA-DA-A1I5-06 19 9068414 9068414 G A MUC16 Silent p.S6344S 0.24 TCGA-DA-A1I5-06 19 9091671 9091671 G A MUC16 Silent p.I48I 0.26 TCGA-DA-A1I5-06 19 9801338 9801338 C T ZNF812 Missense_Mutation p.E281K 0.19 deleterious(0.05) benign(0.21) TCGA-DA-A1I5-06 1 103461558 103461558 G A COL11A1 Missense_Mutation p.P761L 0.32 unknown(0) TCGA-DA-A1I5-06 1 107691265 107691265 C T NTNG1 Missense_Mutation p.S17F 0.33 deleterious(0.03) possibly_damaging(0.737) TCGA-DA-A1I5-06 1 107937858 107937858 C T NTNG1 Missense_Mutation p.P324S 0.31 tolerated(0.14) benign(0.279) TCGA-DA-A1I5-06 1 109271474 109271474 G A FNDC7 Silent p.R530R 0.29 TCGA-DA-A1I5-06 1 112329723 112329723 C T KCND3 Missense_Mutation p.G371E 0.21 deleterious(0) probably_damaging(0.982) TCGA-DA-A1I5-06 1 11303281 11303281 G A MTOR Silent p.F434F 0.24 TCGA-DA-A1I5-06 1 114454751 114454751 C T DCLRE1B Nonsense_Mutation p.Q513* 0.25 TCGA-DA-A1I5-06 1 115323135 115323135 G A SIKE1 Nonsense_Mutation p.Q32* 0.29 TCGA-DA-A1I5-06 1 117544436 117544436 C T CD101 5'UTR 0.33 TCGA-DA-A1I5-06 1 118624248 118624248 C T SPAG17 Missense_Mutation p.E594K 0.20 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 1 119466105 119466105 A T TBX15 Missense_Mutation p.F166Y 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I5-06 1 12785271 12785271 G A AADACL3 Missense_Mutation p.D121N 0.29 tolerated(0.4) benign(0.014) TCGA-DA-A1I5-06 1 144852490 144852490 G A PDE4DIP Intron 0.14 TCGA-DA-A1I5-06 1 145075723 145075723 G A PDE4DIP Missense_Mutation p.P47L 0.09 tolerated_low_confidence(0.16) probably_damaging(0.969) TCGA-DA-A1I5-06 1 150430042 150430042 C T RPRD2 Silent p.I383I 0.22 TCGA-DA-A1I5-06 1 150484121 150484121 C T ECM1 Silent p.F326F 0.24 TCGA-DA-A1I5-06 1 150804825 150804825 A C ARNT Missense_Mutation p.V285G 0.16 deleterious(0.02) benign(0.075) TCGA-DA-A1I5-06 1 150902529 150902529 C T SETDB1 Missense_Mutation p.S116F 0.17 deleterious(0) benign(0.05) TCGA-DA-A1I5-06 1 153309673 153309673 G A PGLYRP4 Silent p.F309F 0.17 TCGA-DA-A1I5-06 1 155838375 155838375 C T SYT11 Silent p.T218T 0.17 TCGA-DA-A1I5-06 1 155931590 155931590 C T ARHGEF2 Missense_Mutation p.E444K 0.19 deleterious(0) probably_damaging(0.917) TCGA-DA-A1I5-06 1 159410507 159410507 C T OR10J1 Missense_Mutation p.S320F 0.26 deleterious(0) probably_damaging(0.914) TCGA-DA-A1I5-06 1 159558607 159558607 C T APCS 3'UTR 0.33 TCGA-DA-A1I5-06 1 159683618 159683618 G A CRP Silent p.I124I 0.50 TCGA-DA-A1I5-06 1 159846476 159846476 C T CCDC19 Missense_Mutation p.E408K 0.29 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 1 168260534 168260534 C T TBX19 Missense_Mutation p.P114S 0.19 deleterious(0.04) benign(0.381) TCGA-DA-A1I5-06 1 169790881 169790881 C T C1orf112 Missense_Mutation p.S255F 0.33 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 1 171254677 171254677 C T FMO1 Silent p.F531F 0.31 TCGA-DA-A1I5-06 1 171761229 171761229 C T METTL13 Missense_Mutation p.P516L 0.16 tolerated(0.18) benign(0.182) TCGA-DA-A1I5-06 1 175097186 175097186 G A TNN Missense_Mutation p.E1022K 0.19 tolerated(0.2) benign(0.158) TCGA-DA-A1I5-06 1 176758969 176758969 G A PAPPA2 Silent p.L1580L 0.71 TCGA-DA-A1I5-06 1 176852083 176852083 G A ASTN1 Missense_Mutation p.P1092S 0.18 tolerated(0.94) possibly_damaging(0.622) TCGA-DA-A1I5-06 1 183083683 183083683 C T LAMC1 Nonsense_Mutation p.R347* 0.11 TCGA-DA-A1I5-06 1 192335163 192335163 C T RGS21 Missense_Mutation p.S123F 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 1 196397273 196397273 C T KCNT2 Missense_Mutation p.D316N 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-DA-A1I5-06 1 204401437 204401437 C T PIK3C2B Missense_Mutation p.R1349Q 0.22 tolerated(0.14) benign(0.004) TCGA-DA-A1I5-06 1 205350689 205350689 G A LEMD1 3'UTR 0.33 TCGA-DA-A1I5-06 1 207643060 207643060 C T CR2 Missense_Mutation p.P280S 0.17 tolerated(0.12) possibly_damaging(0.552) TCGA-DA-A1I5-06 1 207751265 207751265 G A CR1 Silent p.G1551G 0.44 TCGA-DA-A1I5-06 1 20980210 20980210 C T DDOST Silent p.K301K 0.32 TCGA-DA-A1I5-06 1 220089128 220089128 C T SLC30A10 Missense_Mutation p.G374E 0.47 deleterious(0.03) probably_damaging(0.986) TCGA-DA-A1I5-06 1 223178084 223178084 C T DISP1 Silent p.I1115I 0.46 TCGA-DA-A1I5-06 1 228494858 228494858 C T OBSCN Silent p.L5018L 0.15 TCGA-DA-A1I5-06 1 236175286 236175286 G A NID1 Missense_Mutation p.P821L 0.28 deleterious(0.04) possibly_damaging(0.823) TCGA-DA-A1I5-06 1 236914939 236914939 C T ACTN2 Missense_Mutation p.T609I 0.14 tolerated(0.08) benign(0.003) TCGA-DA-A1I5-06 1 236914940 236914940 C T ACTN2 Silent p.T609T 0.13 TCGA-DA-A1I5-06 1 236923026 236923026 G A ACTN2 Silent p.R768R 0.43 TCGA-DA-A1I5-06 1 247587607 247587607 C T NLRP3 Missense_Mutation p.H288Y 0.38 deleterious(0.04) benign(0.003) TCGA-DA-A1I5-06 1 247769793 247769793 G A OR2G3 Silent p.R302R 0.36 TCGA-DA-A1I5-06 1 247836218 247836218 G A OR13G1 Silent p.I42I 0.29 TCGA-DA-A1I5-06 1 247921054 247921054 C T OR1C1 Missense_Mutation p.G219R 0.49 tolerated(0.15) benign(0.446) TCGA-DA-A1I5-06 1 248366917 248366917 C T OR2M3 Missense_Mutation p.S183F 0.51 deleterious(0.02) benign(0.013) TCGA-DA-A1I5-06 1 248402764 248402764 C T OR2M4 Silent p.F178F 0.35 TCGA-DA-A1I5-06 1 248436915 248436915 C T OR2T33 Missense_Mutation p.D68N 0.25 deleterious(0) possibly_damaging(0.899) TCGA-DA-A1I5-06 1 248616173 248616173 C T OR2T2 Silent p.P25P 0.13 TCGA-DA-A1I5-06 1 248685082 248685082 C T OR2G6 Silent p.L45L 0.43 TCGA-DA-A1I5-06 1 27939754 27939754 T G FGR Missense_Mutation p.T453P 0.25 deleterious(0) benign(0.327) TCGA-DA-A1I5-06 1 36230223 36230223 G A CLSPN Missense_Mutation p.P76S 0.26 tolerated(0.21) benign(0.013) TCGA-DA-A1I5-06 1 43830677 43830677 G A ELOVL1 Silent p.F80F 0.23 TCGA-DA-A1I5-06 1 47564867 47564867 C T CYP4Z1 Silent p.I326I 0.39 TCGA-DA-A1I5-06 1 55138821 55138821 G A MROH7 Missense_Mutation p.E553K 0.37 tolerated(0.29) benign(0.037) TCGA-DA-A1I5-06 1 55452004 55452004 G A TMEM61 Missense_Mutation p.G84S 0.26 deleterious(0.04) probably_damaging(0.97) TCGA-DA-A1I5-06 1 55474346 55474346 C T BSND 3'UTR 0.48 TCGA-DA-A1I5-06 1 60359152 60359152 G A CYP2J2 3'UTR 0.37 TCGA-DA-A1I5-06 1 62675455 62675455 G A L1TD1 Missense_Mutation p.D337N 0.22 tolerated(0.21) unknown(0) TCGA-DA-A1I5-06 1 67301341 67301341 C T WDR78 Silent p.R567R 0.28 TCGA-DA-A1I5-06 1 71418690 71418690 C T PTGER3 Missense_Mutation p.G386E 0.29 tolerated_low_confidence(0.46) benign(0) TCGA-DA-A1I5-06 1 74701860 74701860 G A FPGT-TNNI3K Missense_Mutation p.E153K 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-DA-A1I5-06 1 75037784 75037784 G - C1orf173 Frame_Shift_Del p.L1204* 0.22 TCGA-DA-A1I5-06 1 94944087 94944087 G A ABCD3 Intron 0.32 TCGA-DA-A1I5-06 1 95657412 95657412 A G TMEM56 Silent p.G260G 0.30 TCGA-DA-A1I5-06 1 9657101 9657101 C T TMEM201 Missense_Mutation p.P140L 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 20 10030496 10030496 G T ANKEF1 Missense_Mutation p.G427W 0.29 deleterious(0) probably_damaging(0.982) TCGA-DA-A1I5-06 20 2591073 2591073 C T TMC2 Silent p.I474I 0.23 TCGA-DA-A1I5-06 20 2969051 2969051 G A PTPRA Silent p.V223V 0.34 TCGA-DA-A1I5-06 20 41514563 41514563 G A PTPRT Missense_Mutation p.S33F 0.34 deleterious(0) possibly_damaging(0.701) TCGA-DA-A1I5-06 20 44181906 44181906 C T WFDC8 Missense_Mutation p.G152E 0.21 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I5-06 20 44477272 44477272 C T ACOT8 Missense_Mutation p.R102Q 0.21 deleterious(0) probably_damaging(0.982) TCGA-DA-A1I5-06 20 50769728 50769728 G A ZFP64 Missense_Mutation p.R335C 0.31 deleterious(0) probably_damaging(0.973) TCGA-DA-A1I5-06 20 62737683 62737683 G A NPBWR2 Silent p.L168L 0.24 TCGA-DA-A1I5-06 20 8717789 8717789 G A PLCB1 Missense_Mutation p.G720R 0.26 deleterious(0) possibly_damaging(0.609) TCGA-DA-A1I5-06 20 8717790 8717790 G A PLCB1 Missense_Mutation p.G720E 0.24 deleterious(0.01) possibly_damaging(0.821) TCGA-DA-A1I5-06 20 8717814 8717814 A G PLCB1 Missense_Mutation p.E728G 0.23 deleterious(0.01) benign(0.056) TCGA-DA-A1I5-06 20 9317777 9317777 C T PLCB4 Missense_Mutation p.S30F 0.24 deleterious(0) possibly_damaging(0.861) TCGA-DA-A1I5-06 20 9402023 9402023 C T PLCB4 Missense_Mutation p.T733I 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 21 10863024 10863024 C T IGHV1OR21-1 Missense_Mutation p.S107F 0.12 deleterious(0.03) benign(0.054) TCGA-DA-A1I5-06 21 15592007 15592007 C T RBM11 Missense_Mutation p.R74C 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A1I5-06 21 34072313 34072313 G A SYNJ1 Missense_Mutation p.S144L 0.40 deleterious(0.01) possibly_damaging(0.783) TCGA-DA-A1I5-06 21 42778885 42778885 C T MX2 Missense_Mutation p.S622F 0.33 tolerated(0.08) possibly_damaging(0.745) TCGA-DA-A1I5-06 21 45402199 45402199 C T AGPAT3 Missense_Mutation p.R353C 0.26 deleterious(0) possibly_damaging(0.856) TCGA-DA-A1I5-06 22 24219476 24219476 G A SLC2A11 Intron 0.25 TCGA-DA-A1I5-06 22 25019805 25019805 C T GGT1 Silent p.H314H 0.32 TCGA-DA-A1I5-06 22 31522380 31522380 G A INPP5J Nonsense_Mutation p.W62* 0.32 TCGA-DA-A1I5-06 22 39448789 39448789 T G APOBEC3F 3'UTR 0.37 TCGA-DA-A1I5-06 22 50721224 50721224 G A PLXNB2 Missense_Mutation p.S968F 0.23 deleterious(0.01) possibly_damaging(0.646) TCGA-DA-A1I5-06 2 114486999 114486999 A G SLC35F5 Silent p.L357L 0.13 TCGA-DA-A1I5-06 2 120194514 120194514 C T TMEM37 Missense_Mutation p.S24F 0.36 tolerated(0.39) possibly_damaging(0.757) TCGA-DA-A1I5-06 2 130869581 130869581 C T POTEF Missense_Mutation p.D302N 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A1I5-06 2 131520521 131520521 G A AMER3 Silent p.V292V 0.15 TCGA-DA-A1I5-06 2 131976431 131976431 C T POTEE Silent p.V152V 0.20 TCGA-DA-A1I5-06 2 136505928 136505928 C T UBXN4 Silent p.I58I 0.16 TCGA-DA-A1I5-06 2 149806890 149806890 G A KIF5C Silent p.G294G 0.34 TCGA-DA-A1I5-06 2 152684689 152684689 A G ARL5A Translation_Start_Site p.M1? 0.14 deleterious(0) possibly_damaging(0.599) TCGA-DA-A1I5-06 2 159077138 159077138 T A CCDC148 Missense_Mutation p.I447F 0.27 deleterious(0) benign(0) TCGA-DA-A1I5-06 2 159663565 159663565 A C DAPL1 Splice_Site p.X49_splice 0.28 TCGA-DA-A1I5-06 2 160206398 160206398 G A BAZ2B Missense_Mutation p.L1562F 0.17 probably_damaging(0.999) TCGA-DA-A1I5-06 2 162660961 162660961 C T SLC4A10 Missense_Mutation p.H45Y 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-DA-A1I5-06 2 168097208 168097208 A G XIRP2 Missense_Mutation p.N335S 0.25 benign(0.042) TCGA-DA-A1I5-06 2 176857061 176857063 ACT CA KIAA1715 Frame_Shift_Del p.L53Sfs*7 0.19 TCGA-DA-A1I5-06 2 179489390 179489390 C T TTN Missense_Mutation p.E14873K 0.34 TCGA-DA-A1I5-06 2 179537410 179537410 C T TTN Missense_Mutation p.E11603K 0.34 TCGA-DA-A1I5-06 2 179584546 179584546 G A TTN Silent p.I7891I 0.26 TCGA-DA-A1I5-06 2 179615354 179615354 C T TTN Intron 0.31 TCGA-DA-A1I5-06 2 189932972 189932972 G A COL5A2 Missense_Mutation p.P428S 0.33 probably_damaging(0.989) TCGA-DA-A1I5-06 2 191524549 191524549 A G NAB1 Missense_Mutation p.N216S 0.20 tolerated(0.67) benign(0.001) TCGA-DA-A1I5-06 2 196726449 196726449 C T DNAH7 Silent p.K2576K 0.22 TCGA-DA-A1I5-06 2 196741347 196741347 G A DNAH7 Missense_Mutation p.A2013V 0.29 deleterious(0.01) benign(0.155) TCGA-DA-A1I5-06 2 202251159 202251159 C A TRAK2 Missense_Mutation p.G582V 0.29 deleterious(0) probably_damaging(0.984) TCGA-DA-A1I5-06 2 21225135 21225135 C T APOB Missense_Mutation p.E4387K 0.29 benign(0.272) TCGA-DA-A1I5-06 2 213872225 213872225 G A IKZF2 Silent p.F480F 0.33 TCGA-DA-A1I5-06 2 218669215 218669215 G A TNS1 Silent p.S1725S 0.26 TCGA-DA-A1I5-06 2 218669216 218669216 G A TNS1 Missense_Mutation p.S1725F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 2 219301212 219301212 G A VIL1 Missense_Mutation p.E612K 0.30 tolerated(0.06) benign(0.103) TCGA-DA-A1I5-06 2 223169005 223169005 C T CCDC140 Silent p.L128L 0.30 TCGA-DA-A1I5-06 2 228563556 228563556 A G SLC19A3 Missense_Mutation p.F292S 0.26 deleterious(0) probably_damaging(0.949) TCGA-DA-A1I5-06 2 232390033 232390033 G A NMUR1 Silent p.F334F 0.33 TCGA-DA-A1I5-06 2 33500129 33500129 G A LTBP1 Missense_Mutation p.M947I 0.27 tolerated(0.08) benign(0.02) TCGA-DA-A1I5-06 2 33525539 33525539 G A LTBP1 Missense_Mutation p.G1086E 0.31 tolerated(0.42) probably_damaging(0.955) TCGA-DA-A1I5-06 2 48808712 48808712 G A STON1-GTF2A1L Missense_Mutation p.G314R 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 2 60688028 60688028 G A BCL11A Silent p.F673F 0.29 TCGA-DA-A1I5-06 2 69556549 69556549 A T GFPT1 Silent p.I535I 0.36 TCGA-DA-A1I5-06 2 69556550 69556550 A T GFPT1 Missense_Mutation p.I535N 0.35 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I5-06 2 85826146 85826146 G A TMEM150A 3'UTR 0.23 TCGA-DA-A1I5-06 2 90060758 90060758 G T IGKV6D-21 Missense_Mutation p.K35N 0.27 deleterious(0) benign(0.242) TCGA-DA-A1I5-06 2 96259951 96259951 G A TRIM43 Silent p.P60P 0.21 TCGA-DA-A1I5-06 2 97270077 97270077 G A KANSL3 Missense_Mutation p.P687S 0.10 tolerated_low_confidence(0.36) benign(0.004) TCGA-DA-A1I5-06 3 108724118 108724118 C T MORC1 Silent p.L604L 0.31 TCGA-DA-A1I5-06 3 113300282 113300282 C T SIDT1 Silent p.I246I 0.36 TCGA-DA-A1I5-06 3 118866052 118866052 A C C3orf30 Missense_Mutation p.H339P 0.38 tolerated(0.13) benign(0.126) TCGA-DA-A1I5-06 3 118931600 118931600 G A B4GALT4 Intron 0.36 TCGA-DA-A1I5-06 3 126138654 126138654 G A CCDC37 Silent p.G302G 0.10 TCGA-DA-A1I5-06 3 148577630 148577630 G A CPB1 Nonsense_Mutation p.W365* 0.28 TCGA-DA-A1I5-06 3 156139410 156139410 T C KCNAB1 Missense_Mutation p.L94P 0.25 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I5-06 3 15719851 15719851 G A ANKRD28 Missense_Mutation p.H828Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I5-06 3 169656266 169656266 G A SAMD7 Missense_Mutation p.G438E 0.38 tolerated(1) benign(0.024) TCGA-DA-A1I5-06 3 183390140 183390143 TGCC GCA KLHL24 Frame_Shift_Del p.I490Mfs*6 0.12 TCGA-DA-A1I5-06 3 186338685 186338685 C T AHSG Missense_Mutation p.P357L 0.28 tolerated(0.75) benign(0.023) TCGA-DA-A1I5-06 3 192517371 192517371 G C MB21D2 Missense_Mutation p.R94G 0.32 deleterious(0.02) probably_damaging(0.952) TCGA-DA-A1I5-06 3 196381472 196381472 A G NRROS Missense_Mutation p.N21S 0.25 tolerated(1) benign(0.001) TCGA-DA-A1I5-06 3 196792579 196792579 G A DLG1 Missense_Mutation p.H767Y 0.34 deleterious(0) probably_damaging(0.991) TCGA-DA-A1I5-06 3 24231772 24231772 C T THRB Missense_Mutation p.D26N 0.17 tolerated_low_confidence(0.51) benign(0.002) TCGA-DA-A1I5-06 3 38938447 38938447 G A SCN11A Silent p.I764I 0.23 TCGA-DA-A1I5-06 3 47951734 47951734 G A MAP4 Intron 0.16 TCGA-DA-A1I5-06 3 4847917 4847917 G A ITPR1 Missense_Mutation p.G2398E 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 3 4847918 4847918 G A ITPR1 Silent p.G2398G 0.15 TCGA-DA-A1I5-06 3 48732679 48732679 C T IP6K2 Missense_Mutation p.G16S 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I5-06 3 49200301 49200301 G A CCDC71 Silent p.I447I 0.25 TCGA-DA-A1I5-06 3 50614591 50614591 C T HEMK1 Missense_Mutation p.L175F 0.16 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 3 51266179 51266179 C T DOCK3 Missense_Mutation p.P579S 0.23 tolerated(0.15) possibly_damaging(0.794) TCGA-DA-A1I5-06 3 52780790 52780790 T C NEK4 Missense_Mutation p.H546R 0.40 tolerated(0.71) benign(0.005) TCGA-DA-A1I5-06 3 87018250 87018250 G A VGLL3 Missense_Mutation p.R143W 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1I5-06 3 9166422 9166422 C T SRGAP3 Missense_Mutation p.E83K 0.35 tolerated(0.05) probably_damaging(0.995) TCGA-DA-A1I5-06 3 9827025 9827025 G A TADA3 Missense_Mutation p.P299S 0.32 tolerated(0.07) benign(0.222) TCGA-DA-A1I5-06 4 109895523 109895523 C T COL25A1 Silent p.R164R 0.34 TCGA-DA-A1I5-06 4 114275410 114275410 C T ANK2 Missense_Mutation p.S1879L 0.31 benign(0.011) TCGA-DA-A1I5-06 4 123542116 123542116 G A IL21 Silent p.V17V 0.33 TCGA-DA-A1I5-06 4 138453306 138453306 C T PCDH18 5'UTR 0.36 TCGA-DA-A1I5-06 4 151388908 151388908 G A LRBA Missense_Mutation p.P2244S 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 4 151392883 151392883 G A LRBA Missense_Mutation p.S2198L 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 4 155506800 155506800 G A FGA Missense_Mutation p.S594F 0.26 deleterious(0) probably_damaging(0.956) TCGA-DA-A1I5-06 4 164066932 164066932 A G NAF1 Splice_Site p.X239_splice 0.27 TCGA-DA-A1I5-06 4 164272238 164272238 C T NPY5R Silent p.L271L 0.21 TCGA-DA-A1I5-06 4 16504134 16504134 C T LDB2 3'UTR 0.44 TCGA-DA-A1I5-06 4 166996071 166996071 G A TLL1 Missense_Mutation p.E744K 0.25 tolerated(0.15) benign(0.279) TCGA-DA-A1I5-06 4 184589218 184589218 A G TRAPPC11 Missense_Mutation p.K170E 0.32 deleterious(0) benign(0.292) TCGA-DA-A1I5-06 4 187541133 187541133 G A FAT1 Missense_Mutation p.H2203Y 0.26 probably_damaging(0.988) TCGA-DA-A1I5-06 4 25678062 25678062 G A SLC34A2 Silent p.Q588Q 0.29 TCGA-DA-A1I5-06 4 289909 289909 G A ZNF732 Silent p.F13F 0.18 TCGA-DA-A1I5-06 4 36212304 36212304 G A ARAP2 Nonsense_Mutation p.R399* 0.26 TCGA-DA-A1I5-06 4 40356123 40356123 G A CHRNA9 Silent p.L342L 0.33 TCGA-DA-A1I5-06 4 47514588 47514588 C T ATP10D Missense_Mutation p.H11Y 0.35 deleterious(0.04) benign(0.285) TCGA-DA-A1I5-06 4 55984967 55984967 C T KDR Silent p.R54R 0.31 TCGA-DA-A1I5-06 4 68780325 68780325 C T TMPRSS11A Missense_Mutation p.G362E 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 4 69535870 69535870 G A UGT2B15 Missense_Mutation p.P156L 0.27 tolerated(0.07) benign(0.327) TCGA-DA-A1I5-06 4 69973826 69973826 C T UGT2B7 Missense_Mutation p.P366S 0.29 deleterious(0.01) benign(0.365) TCGA-DA-A1I5-06 4 70359494 70359494 C T UGT2B4 Missense_Mutation p.D263N 0.23 tolerated(0.06) benign(0.118) TCGA-DA-A1I5-06 4 70823276 70823276 G A CSN2 Missense_Mutation p.P131S 0.21 tolerated(0.16) benign(0.078) TCGA-DA-A1I5-06 4 77231024 77231024 T G FAM47E-STBD1 Missense_Mutation p.D316E 0.18 deleterious(0.02) probably_damaging(0.925) TCGA-DA-A1I5-06 4 81966994 81966994 G A BMP3 Missense_Mutation p.G140E 0.25 tolerated(0.63) benign(0) TCGA-DA-A1I5-06 5 121759022 121759022 C T SNCAIP Missense_Mutation p.S197F 0.43 deleterious(0.02) benign(0.089) TCGA-DA-A1I5-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.28 tolerated_low_confidence(0.62) benign(0) TCGA-DA-A1I5-06 5 140581192 140581192 C T PCDHB11 Silent p.F615F 0.34 TCGA-DA-A1I5-06 5 140605400 140605400 C T PCDHB14 Nonsense_Mutation p.Q775* 0.28 TCGA-DA-A1I5-06 5 140784766 140784766 C T PCDHGA9 Silent p.F749F 0.56 TCGA-DA-A1I5-06 5 147929700 147929700 C T HTR4 Missense_Mutation p.R51K 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I5-06 5 15928108 15928108 C T FBXL7 Silent p.S79S 0.50 TCGA-DA-A1I5-06 5 16067614 16067614 G A MARCH11 Missense_Mutation p.S392L 0.45 deleterious(0) possibly_damaging(0.615) TCGA-DA-A1I5-06 5 176002198 176002198 G A CDHR2 Silent p.E203E 0.47 TCGA-DA-A1I5-06 5 19520879 19520879 C T CDH18 Missense_Mutation p.D467N 0.45 tolerated(0.22) benign(0.001) TCGA-DA-A1I5-06 5 35065851 35065851 G A PRLR Silent p.I403I 0.29 TCGA-DA-A1I5-06 5 35727804 35727804 G A SPEF2 Missense_Mutation p.G981E 0.31 tolerated(0.18) benign(0.331) TCGA-DA-A1I5-06 5 37052538 37052538 C T NIPBL Missense_Mutation p.P2378L 0.30 tolerated(0.66) benign(0.02) TCGA-DA-A1I5-06 5 39381617 39381617 G C DAB2 Silent p.P481P 0.23 TCGA-DA-A1I5-06 5 66479863 66479863 C T CD180 Missense_Mutation p.G270R 0.46 deleterious(0) probably_damaging(0.936) TCGA-DA-A1I5-06 5 80057454 80057454 T G MSH3 Missense_Mutation p.L618W 0.30 deleterious(0) probably_damaging(0.992) TCGA-DA-A1I5-06 5 89979723 89979723 G A GPR98 Silent p.Q1995Q 0.61 TCGA-DA-A1I5-06 5 95226829 95226829 G A ELL2 Missense_Mutation p.S580F 0.36 deleterious(0.01) possibly_damaging(0.821) TCGA-DA-A1I5-06 6 117645561 117645561 C T ROS1 Missense_Mutation p.E1859K 0.29 tolerated(0.32) benign(0.359) TCGA-DA-A1I5-06 6 12718975 12718975 G A PHACTR1 5'UTR 0.25 TCGA-DA-A1I5-06 6 12718976 12718976 G A PHACTR1 5'UTR 0.26 TCGA-DA-A1I5-06 6 128294914 128294914 C T PTPRK Missense_Mutation p.R1349Q 0.23 tolerated(0.17) probably_damaging(0.975) TCGA-DA-A1I5-06 6 129837450 129837450 G A LAMA2 Silent p.L3109L 0.33 TCGA-DA-A1I5-06 6 131276354 131276354 G A EPB41L2 Missense_Mutation p.T199I 0.29 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I5-06 6 137245608 137245608 G A SLC35D3 Missense_Mutation p.G342E 0.24 tolerated_low_confidence(0.22) benign(0.037) TCGA-DA-A1I5-06 6 139488217 139488217 C T HECA Silent p.I356I 0.30 TCGA-DA-A1I5-06 6 165715373 165715373 G A C6orf118 Silent p.F146F 0.35 TCGA-DA-A1I5-06 6 166831811 166831811 C T RPS6KA2 Missense_Mutation p.G622R 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-DA-A1I5-06 6 28119712 28119712 C T ZKSCAN8 Nonsense_Mutation p.Q217* 0.38 TCGA-DA-A1I5-06 6 29141462 29141462 G A OR2J2 Missense_Mutation p.G17E 0.26 deleterious(0) probably_damaging(0.983) TCGA-DA-A1I5-06 6 3155866 3155866 G A TUBB2A Silent p.F90F 0.24 TCGA-DA-A1I5-06 6 31615563 31615563 G A BAG6 Missense_Mutation p.P204L 0.31 deleterious(0.02) benign(0.004) TCGA-DA-A1I5-06 6 32013006 32013006 G A TNXB 5'UTR 0.14 TCGA-DA-A1I5-06 6 32148079 32148079 C T RNF5 Silent p.F173F 0.23 TCGA-DA-A1I5-06 6 33132137 33132137 G A COL11A2 Silent p.A1573A 0.18 TCGA-DA-A1I5-06 6 34741275 34741275 C T SNRPC Silent p.P136P 0.27 TCGA-DA-A1I5-06 6 38825330 38825330 G A DNAH8 Missense_Mutation p.D1707N 0.20 possibly_damaging(0.899) TCGA-DA-A1I5-06 6 38830135 38830135 G A DNAH8 Missense_Mutation p.E1854K 0.34 probably_damaging(1) TCGA-DA-A1I5-06 6 38854607 38854607 G A DNAH8 Missense_Mutation p.G2550E 0.16 probably_damaging(1) TCGA-DA-A1I5-06 6 38875794 38875794 G A DNAH8 Missense_Mutation p.M2920I 0.26 probably_damaging(0.949) TCGA-DA-A1I5-06 6 39272353 39272353 T C KCNK17 Missense_Mutation p.N144S 0.30 deleterious(0) probably_damaging(0.981) TCGA-DA-A1I5-06 6 41162268 41162268 G A TREML2 Missense_Mutation p.S227F 0.33 tolerated(0.37) benign(0.023) TCGA-DA-A1I5-06 6 49928133 49928133 G A DEFB114 Missense_Mutation p.R28C 0.31 deleterious_low_confidence(0) benign(0) TCGA-DA-A1I5-06 6 51524233 51524233 G A PKHD1 Missense_Mutation p.A3564V 0.19 deleterious(0.04) benign(0.124) TCGA-DA-A1I5-06 6 52367958 52367958 C T TRAM2 3'UTR 0.32 TCGA-DA-A1I5-06 6 56471353 56471353 G A DST Intron 0.28 TCGA-DA-A1I5-06 6 7583542 7583542 G A DSP Missense_Mutation p.G2016E 0.24 probably_damaging(1) TCGA-DA-A1I5-06 6 7584933 7584933 C A DSP Missense_Mutation p.Q2480K 0.38 benign(0.301) TCGA-DA-A1I5-06 6 84765113 84765113 G A MRAP2 Missense_Mutation p.E26K 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1I5-06 6 88119576 88119576 G A C6ORF165 Missense_Mutation p.E7K 0.26 deleterious(0) probably_damaging(0.988) TCGA-DA-A1I5-06 6 88173827 88173827 G A C6ORF165 Silent p.K576K 0.34 TCGA-DA-A1I5-06 6 97561953 97561953 C T KLHL32 Missense_Mutation p.R308W 0.29 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 7 100369572 100369572 C T ZAN Missense_Mutation p.S1785F 0.17 unknown(0) TCGA-DA-A1I5-06 7 102579980 102579980 T G LRRC17 Missense_Mutation p.H292Q 0.19 tolerated(0.25) benign(0.038) TCGA-DA-A1I5-06 7 108154961 108154961 T C PNPLA8 Silent p.E325E 0.20 TCGA-DA-A1I5-06 7 112462292 112462292 A G C7orf60 Missense_Mutation p.V242A 0.40 deleterious(0) probably_damaging(0.985) TCGA-DA-A1I5-06 7 116409818 116409818 G A MET Silent p.L919L 0.39 TCGA-DA-A1I5-06 7 117254679 117254679 G A CFTR Missense_Mutation p.G1127E 0.17 deleterious(0.01) possibly_damaging(0.503) TCGA-DA-A1I5-06 7 122338165 122338165 G A RNF133 Missense_Mutation p.R270C 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1I5-06 7 127235455 127235455 G C FSCN3 Missense_Mutation p.G80A 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 7 128119282 128119282 G A METTL2B Silent p.K91K 0.09 TCGA-DA-A1I5-06 7 134625906 134625906 C T CALD1 Nonsense_Mutation p.R484* 0.29 TCGA-DA-A1I5-06 7 137792257 137792257 C T AKR1D1 Silent p.F262F 0.21 TCGA-DA-A1I5-06 7 137801473 137801473 C T AKR1D1 3'UTR 0.29 TCGA-DA-A1I5-06 7 140301538 140301538 C T DENND2A Silent p.S220S 0.47 TCGA-DA-A1I5-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I5-06 7 141635657 141635657 C T CLEC5A Missense_Mutation p.G101E 0.37 tolerated(1) benign(0.001) TCGA-DA-A1I5-06 7 141643748 141643748 C T CLEC5A Silent p.G52G 0.43 TCGA-DA-A1I5-06 7 141764249 141764249 C T MGAM Missense_Mutation p.P1471S 0.62 tolerated(0.47) benign(0.151) TCGA-DA-A1I5-06 7 142197589 142197589 G A TRBV11-2 RNA 0.26 TCGA-DA-A1I5-06 7 142564278 142564278 C T EPHB6 Missense_Mutation p.S501F 0.53 deleterious(0.02) benign(0.315) TCGA-DA-A1I5-06 7 149480322 149480322 C T SSPO RNA 0.10 TCGA-DA-A1I5-06 7 151960106 151960106 A G KMT2C Missense_Mutation p.C432R 0.46 probably_damaging(1) TCGA-DA-A1I5-06 7 154585800 154585800 T C DPP6 Missense_Mutation p.I383T 0.51 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I5-06 7 20767987 20767987 C T ABCB5 Missense_Mutation p.H926Y 0.23 deleterious(0.01) possibly_damaging(0.792) TCGA-DA-A1I5-06 7 27284840 27284840 G A EVX1 Missense_Mutation p.E201K 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 7 2952944 2952944 A G CARD11 Missense_Mutation p.M999T 0.18 deleterious(0.02) benign(0.171) TCGA-DA-A1I5-06 7 32529912 32529912 C T LSM5 Intron 0.25 TCGA-DA-A1I5-06 7 34094894 34094894 A C BMPER Missense_Mutation p.K302N 0.16 tolerated(0.08) benign(0.381) TCGA-DA-A1I5-06 7 34698142 34698142 G A NPSR1 Missense_Mutation p.E40K 0.17 deleterious(0.03) benign(0.167) TCGA-DA-A1I5-06 7 36570058 36570058 G A AOAH Silent p.F496F 0.30 TCGA-DA-A1I5-06 7 36616204 36616204 C T AOAH Missense_Mutation p.D333N 0.16 deleterious(0.01) probably_damaging(1) TCGA-DA-A1I5-06 7 43484483 43484483 C T HECW1 Missense_Mutation p.P571L 0.20 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-DA-A1I5-06 7 43484587 43484587 G A HECW1 Missense_Mutation p.V606M 0.38 tolerated_low_confidence(0.11) benign(0.006) TCGA-DA-A1I5-06 7 48269475 48269475 C T ABCA13 Missense_Mutation p.S229F 0.21 benign(0.01) TCGA-DA-A1I5-06 7 48450124 48450124 G A ABCA13 Silent p.T4026T 0.20 TCGA-DA-A1I5-06 7 53103666 53103666 C T POM121L12 Missense_Mutation p.A101V 0.28 tolerated(0.07) possibly_damaging(0.866) TCGA-DA-A1I5-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.24 TCGA-DA-A1I5-06 7 81392041 81392041 C T HGF Missense_Mutation p.G79E 0.16 tolerated(0.19) benign(0.113) TCGA-DA-A1I5-06 7 99032539 99032539 G A ATP5J2-PTCD1 Silent p.F158F 0.47 TCGA-DA-A1I5-06 8 10467773 10467773 C T RP1L1 Missense_Mutation p.D1279N 0.30 benign(0.19) TCGA-DA-A1I5-06 8 104897590 104897590 G A RIMS2 Missense_Mutation p.E255K 0.33 tolerated_low_confidence(0.57) benign(0.209) TCGA-DA-A1I5-06 8 10892744 10892744 G A XKR6 Intron 0.43 TCGA-DA-A1I5-06 8 110131314 110131314 C T TRHR Missense_Mutation p.A276V 0.30 deleterious(0) probably_damaging(0.984) TCGA-DA-A1I5-06 8 110431368 110431368 G A PKHD1L1 Silent p.T801T 0.29 TCGA-DA-A1I5-06 8 113529291 113529291 G A CSMD3 Silent p.F1576F 0.34 TCGA-DA-A1I5-06 8 11412309 11412309 A G BLK Missense_Mutation p.Y177C 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 8 133584601 133584601 C T LRRC6 Missense_Mutation p.E452K 0.25 tolerated(0.46) benign(0.211) TCGA-DA-A1I5-06 8 139164294 139164294 G A FAM135B Silent p.S808S 0.42 TCGA-DA-A1I5-06 8 142204174 142204174 G A DENND3 Missense_Mutation p.G1147R 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 8 144940463 144940463 G A EPPK1 Missense_Mutation p.S2320F 0.06 probably_damaging(1) TCGA-DA-A1I5-06 8 144995049 144995049 C T PLEC Silent p.L3117L 0.42 TCGA-DA-A1I5-06 8 145661974 145661974 C T TONSL Missense_Mutation p.E661K 0.22 deleterious(0.01) possibly_damaging(0.884) TCGA-DA-A1I5-06 8 145661975 145661975 C T TONSL Missense_Mutation p.M660I 0.22 tolerated(0.08) benign(0.437) TCGA-DA-A1I5-06 8 24326320 24326320 C T ADAM7 Missense_Mutation p.A207V 0.28 tolerated(1) possibly_damaging(0.511) TCGA-DA-A1I5-06 8 27957418 27957418 C T ELP3 Missense_Mutation p.P65S 0.27 tolerated(0.1) benign(0.04) TCGA-DA-A1I5-06 8 28627437 28627437 G A INTS9 Missense_Mutation p.P590L 0.29 deleterious(0.01) benign(0.118) TCGA-DA-A1I5-06 8 28876343 28876343 C T HMBOX1 Missense_Mutation p.P255L 0.33 tolerated(0.09) benign(0.046) TCGA-DA-A1I5-06 8 38865485 38865485 A T ADAM9 Missense_Mutation p.R60W 0.23 tolerated(0.12) benign(0.009) TCGA-DA-A1I5-06 8 39114851 39114851 C T ADAM32 Silent p.F717F 0.30 TCGA-DA-A1I5-06 8 39624428 39624428 C T ADAM2 Nonsense_Mutation p.W482* 0.54 TCGA-DA-A1I5-06 8 41834788 41834788 T A KAT6A Missense_Mutation p.K367N 0.24 benign(0.443) TCGA-DA-A1I5-06 8 48842431 48842431 C T PRKDC Silent p.K678K 0.28 TCGA-DA-A1I5-06 8 69020350 69020350 C T PREX2 Missense_Mutation p.R908C 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-DA-A1I5-06 8 69129915 69129915 C T PREX2 Missense_Mutation p.R1557C 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A1I5-06 8 70667861 70667861 G A SLCO5A1 Silent p.L352L 0.31 TCGA-DA-A1I5-06 8 73479929 73479929 T A KCNB2 5'UTR 0.23 TCGA-DA-A1I5-06 8 95178002 95178002 C T CDH17 Silent p.E423E 0.22 TCGA-DA-A1I5-06 8 99441649 99441649 G A KCNS2 3'UTR 0.33 TCGA-DA-A1I5-06 9 113703966 113703966 G A LPAR1 Silent p.I176I 0.44 TCGA-DA-A1I5-06 9 115456459 115456459 C G INIP Missense_Mutation p.R27T 0.30 deleterious(0) benign(0.048) TCGA-DA-A1I5-06 9 115930838 115930838 T C FKBP15 Splice_Site p.X1162_splice 0.37 TCGA-DA-A1I5-06 9 119188211 119188211 G A ASTN2 Silent p.I1262I 0.38 TCGA-DA-A1I5-06 9 134382804 134382804 C T POMT1 Silent p.L110L 0.35 TCGA-DA-A1I5-06 9 135553441 135553441 C T GTF3C4 Silent p.F145F 0.25 TCGA-DA-A1I5-06 9 140094220 140094221 - GG TPRN Frame_Shift_Ins p.L315Pfs*136 0.27 TCGA-DA-A1I5-06 9 14722193 14722193 C T CER1 Missense_Mutation p.E160K 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I5-06 9 14804986 14804986 C T FREM1 Missense_Mutation p.E1147K 0.41 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I5-06 9 35045666 35045666 G A C9orf131 Missense_Mutation p.G1014S 0.41 tolerated(0.12) benign(0.117) TCGA-DA-A1I5-06 9 35800423 35800423 C T NPR2 Silent p.D387D 0.11 TCGA-DA-A1I5-06 9 36087828 36087828 C T RECK Missense_Mutation p.P259S 0.23 deleterious(0.02) possibly_damaging(0.861) TCGA-DA-A1I5-06 9 4697137 4697137 G C CDC37L1 Missense_Mutation p.D184H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1I5-06 9 5164194 5164194 C T INSL6 Missense_Mutation p.G121R 0.72 tolerated(0.06) benign(0.055) TCGA-DA-A1I5-06 9 71849418 71849418 C T TJP2 Missense_Mutation p.P610S 0.39 deleterious(0.02) probably_damaging(0.954) TCGA-DA-A1I5-06 9 73240416 73240416 G A TRPM3 Intron 0.32 TCGA-DA-A1I5-06 9 79325833 79325833 C G PRUNE2 Missense_Mutation p.G453R 0.54 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A1I5-06 9 90345972 90345972 C T CTSL Missense_Mutation p.R318W 0.38 tolerated(0.13) benign(0.109) TCGA-DA-A1I5-06 9 95872947 95872947 C G C9orf89 Missense_Mutation p.A83G 0.37 tolerated(0.05) probably_damaging(0.987) TCGA-DA-A1I5-06 9 95872948 95872948 C T C9orf89 Silent p.A83A 0.38 TCGA-DA-A1I5-06 X 100375738 100375738 C T CENPI Missense_Mutation p.R218C 0.12 deleterious(0) probably_damaging(0.993) TCGA-DA-A1I5-06 X 100532599 100532599 G A TAF7L Missense_Mutation p.S315L 0.14 tolerated(0.15) benign(0.013) TCGA-DA-A1I5-06 X 107316583 107316583 C T VSIG1 Silent p.I260I 0.17 TCGA-DA-A1I5-06 X 107846280 107846280 C T COL4A5 Missense_Mutation p.P745S 0.33 unknown(0) TCGA-DA-A1I5-06 X 111090377 111090377 C T TRPC5 Silent p.G555G 0.27 TCGA-DA-A1I5-06 X 117739215 117739215 G A DOCK11 Missense_Mutation p.M859I 0.11 tolerated(0.58) benign(0.02) TCGA-DA-A1I5-06 X 12924804 12924804 G A TLR8 5'UTR 0.55 TCGA-DA-A1I5-06 X 129263945 129263945 C T AIFM1 Silent p.K590K 0.14 TCGA-DA-A1I5-06 X 129349848 129349848 A G ZNF280C Silent p.A585A 0.15 TCGA-DA-A1I5-06 X 130678868 130678868 C T OR13H1 Missense_Mutation p.S274L 0.29 deleterious(0) probably_damaging(0.985) TCGA-DA-A1I5-06 X 133551424 133551424 G A PHF6 Intron 0.44 TCGA-DA-A1I5-06 X 134426375 134426375 C T ZNF75D Missense_Mutation p.E146K 0.16 tolerated(0.14) benign(0) TCGA-DA-A1I5-06 X 135428079 135428079 T A GPR112 Missense_Mutation p.N738K 0.19 deleterious(0) possibly_damaging(0.656) TCGA-DA-A1I5-06 X 151092879 151092879 C T MAGEA4 Missense_Mutation p.T248I 0.20 deleterious(0.01) possibly_damaging(0.743) TCGA-DA-A1I5-06 X 151303936 151303936 G A MAGEA10 Missense_Mutation p.P53S 0.19 tolerated(0.91) benign(0.023) TCGA-DA-A1I5-06 X 152128332 152128332 G A ZNF185 Missense_Mutation p.G531E 0.17 tolerated(0.15) benign(0.105) TCGA-DA-A1I5-06 X 152226813 152226813 G A PNMA3 3'UTR 0.17 TCGA-DA-A1I5-06 X 153032887 153032887 C T PLXNB3 Missense_Mutation p.P225L 0.14 deleterious(0) probably_damaging(1) TCGA-DA-A1I5-06 X 154159922 154159922 C T F8 Missense_Mutation p.D715N 0.36 deleterious(0.04) possibly_damaging(0.821) TCGA-DA-A1I5-06 X 155127812 155127812 G A VAMP7 Missense_Mutation p.E81K 0.16 deleterious(0.02) probably_damaging(0.974) TCGA-DA-A1I5-06 X 19568112 19568112 G A SH3KBP1 Missense_Mutation p.P492S 0.14 tolerated(0.07) benign(0.043) TCGA-DA-A1I5-06 X 23018769 23018769 G A DDX53 Missense_Mutation p.E199K 0.29 tolerated(0.09) possibly_damaging(0.468) TCGA-DA-A1I5-06 X 37699884 37699884 C T DYNLT3 Missense_Mutation p.E99K 0.23 deleterious(0) possibly_damaging(0.492) TCGA-DA-A1I5-06 X 49034802 49034802 C T PRICKLE3 Missense_Mutation p.G196E 0.22 deleterious(0.01) probably_damaging(0.911) TCGA-DA-A1I5-06 X 50119821 50119821 G A DGKK RNA 0.29 TCGA-DA-A1I5-06 X 53406934 53406934 G A SMC1A 3'UTR 0.40 TCGA-DA-A1I5-06 X 55043923 55043923 C T ALAS2 Missense_Mutation p.M333I 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I5-06 X 57318998 57318998 G A FAAH2 Missense_Mutation p.G87E 0.41 deleterious(0.01) benign(0.348) TCGA-DA-A1I5-06 X 6069279 6069279 G A NLGN4X Missense_Mutation p.P77S 0.27 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I5-06 X 65412096 65412096 G A HEPH Missense_Mutation p.M450I 0.28 tolerated(0.06) benign(0.001) TCGA-DA-A1I5-06 X 68381749 68381749 G A PJA1 Nonsense_Mutation p.R445* 0.37 TCGA-DA-A1I5-06 X 71427199 71427199 C T ERCC6L Missense_Mutation p.R473Q 0.19 tolerated(0.24) benign(0.021) TCGA-DA-A1I5-06 X 71800812 71800812 C T PHKA1 3'UTR 0.33 TCGA-DA-A1I5-06 X 73072212 73072212 G A XIST RNA 0.32 TCGA-DA-A1I5-06 X 77245370 77245370 A C ATP7A Missense_Mutation p.T418P 0.18 deleterious(0.01) possibly_damaging(0.794) TCGA-DA-A1I5-06 X 77913245 77913245 G A ZCCHC5 Missense_Mutation p.P225S 0.33 tolerated(0.12) benign(0.15) TCGA-DA-A1I5-06 X 83128074 83128074 G A CYLC1 Missense_Mutation p.D120N 0.56 tolerated(0.41) possibly_damaging(0.827) TCGA-DA-A1I5-06 X 83128367 83128367 G A CYLC1 Silent p.K217K 0.14 TCGA-DA-A1I5-06 X 83361437 83361437 A G RPS6KA6 Missense_Mutation p.V434A 0.27 tolerated(0.72) benign(0.024) TCGA-DA-A1I5-06 X 84525120 84525120 G A ZNF711 Missense_Mutation p.R359K 0.20 tolerated(1) benign(0.083) TCGA-DA-A1I5-06 X 99854661 99854661 C T TNMD Missense_Mutation p.R301C 0.23 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I7-06 10 103339317 103339317 G A POLL Missense_Mutation p.H541Y 0.36 tolerated(0.09) benign(0.01) TCGA-DA-A1I7-06 10 105104827 105104827 G A PCGF6 Missense_Mutation p.R246C 0.19 deleterious(0.03) benign(0.217) TCGA-DA-A1I7-06 10 114177625 114177625 C T ACSL5 Missense_Mutation p.R470C 0.22 deleterious(0) probably_damaging(0.924) TCGA-DA-A1I7-06 10 11505704 11505704 G A USP6NL Missense_Mutation p.P425L 0.20 deleterious(0.02) benign(0.26) TCGA-DA-A1I7-06 10 118101596 118101596 G A CCDC172 Missense_Mutation p.E111K 0.15 deleterious(0) possibly_damaging(0.637) TCGA-DA-A1I7-06 10 118306870 118306870 G A PNLIP Silent p.T37T 0.24 TCGA-DA-A1I7-06 10 120917223 120917223 G A SFXN4 Missense_Mutation p.S165L 0.21 tolerated(0.54) benign(0.004) TCGA-DA-A1I7-06 10 123845037 123845037 G A TACC2 Missense_Mutation p.E1008K 0.30 probably_damaging(0.998) TCGA-DA-A1I7-06 10 124399588 124399588 C T DMBT1 Silent p.F2196F 0.22 TCGA-DA-A1I7-06 10 131506261 131506261 C T MGMT Silent p.I107I 0.26 TCGA-DA-A1I7-06 10 23250819 23250819 C T ARMC3 Nonsense_Mutation p.Q182* 0.33 TCGA-DA-A1I7-06 10 25684866 25684866 C T GPR158 Silent p.F345F 0.26 TCGA-DA-A1I7-06 10 26241128 26241128 G A MYO3A Missense_Mutation p.G30E 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 10 27423048 27423048 G A YME1L1 Missense_Mutation p.S289F 0.32 tolerated(0.27) benign(0.019) TCGA-DA-A1I7-06 10 30318722 30318722 C T KIAA1462 Missense_Mutation p.G119R 0.24 tolerated(0.07) benign(0.397) TCGA-DA-A1I7-06 10 31810034 31810034 A T ZEB1 Missense_Mutation p.N592Y 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 10 409149 409149 G A DIP2C Silent p.S860S 0.29 TCGA-DA-A1I7-06 10 52002964 52002964 C T ASAH2 Missense_Mutation p.E170K 0.21 deleterious(0.05) possibly_damaging(0.491) TCGA-DA-A1I7-06 10 54041970 54041970 G A PRKG1 Missense_Mutation p.G535R 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 10 54528199 54528199 C T MBL2 Missense_Mutation p.E149K 0.25 tolerated(0.18) benign(0.018) TCGA-DA-A1I7-06 10 55582729 55582729 C T PCDH15 Missense_Mutation p.R1588K 0.29 tolerated_low_confidence(0.98) benign(0.027) TCGA-DA-A1I7-06 10 63851334 63851334 C T ARID5B Silent p.L704L 0.38 TCGA-DA-A1I7-06 10 6528045 6528045 G A PRKCQ Silent p.N284N 0.19 TCGA-DA-A1I7-06 10 73447448 73447448 C T CDH23 Silent p.F269F 0.17 TCGA-DA-A1I7-06 10 75608802 75608802 G A CAMK2G Silent p.I162I 0.31 TCGA-DA-A1I7-06 10 81697824 81697824 G A SFTPD Silent p.V304V 0.28 TCGA-DA-A1I7-06 10 93740304 93740304 C T BTAF1 Missense_Mutation p.L582F 0.29 deleterious(0.03) benign(0.334) TCGA-DA-A1I7-06 10 95097616 95097616 C T MYOF Missense_Mutation p.E1465K 0.24 tolerated(0.12) benign(0.119) TCGA-DA-A1I7-06 10 96612527 96612527 G A CYP2C19 Missense_Mutation p.M443I 0.13 deleterious(0) possibly_damaging(0.865) TCGA-DA-A1I7-06 11 101762046 101762046 C T ANGPTL5 Missense_Mutation p.M377I 0.32 deleterious(0.04) benign(0.428) TCGA-DA-A1I7-06 11 101946721 101946721 G A C11orf70 Missense_Mutation p.D185N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 11 104866478 104866478 C T CASP5 Missense_Mutation p.G446D 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 11 10585851 10585851 C T LYVE1 Silent p.L52L 0.26 TCGA-DA-A1I7-06 11 106558471 106558471 C T GUCY1A2 Missense_Mutation p.R699Q 0.44 tolerated(0.28) benign(0.012) TCGA-DA-A1I7-06 11 107518222 107518222 C T ELMOD1 Missense_Mutation p.P150L 0.41 tolerated(0.16) probably_damaging(1) TCGA-DA-A1I7-06 11 117988691 117988691 C T TMPRSS4 3'UTR 0.30 TCGA-DA-A1I7-06 11 118344497 118344497 G A KMT2A Missense_Mutation p.E875K 0.63 probably_damaging(0.952) TCGA-DA-A1I7-06 11 121474953 121474953 G A SORL1 Missense_Mutation p.G1524E 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.708) TCGA-DA-A1I7-06 11 123994364 123994364 C T VWA5A Intron 0.28 TCGA-DA-A1I7-06 11 1269208 1269208 G A MUC5B Missense_Mutation p.A3700T 0.17 unknown(0) TCGA-DA-A1I7-06 11 128840253 128840253 G A ARHGAP32 Missense_Mutation p.P1605S 0.17 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I7-06 11 130342971 130342971 C T ADAMTS15 Missense_Mutation p.P703L 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 11 17452441 17452441 G A ABCC8 Silent p.S579S 0.20 TCGA-DA-A1I7-06 11 18042421 18042421 C T TPH1 3'UTR 0.53 TCGA-DA-A1I7-06 11 18741335 18741335 C T IGSF22 Missense_Mutation p.M208I 0.42 tolerated(0.53) benign(0.047) TCGA-DA-A1I7-06 11 19247144 19247144 G A E2F8 Missense_Mutation p.S682L 0.42 deleterious(0.04) benign(0.14) TCGA-DA-A1I7-06 11 20869158 20869158 G T NELL1 Missense_Mutation p.R122M 0.23 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I7-06 11 2608915 2608915 C T KCNQ1 Missense_Mutation p.S415F 0.17 deleterious(0.02) benign(0.052) TCGA-DA-A1I7-06 11 43819886 43819886 G A HSD17B12 Silent p.V100V 0.45 TCGA-DA-A1I7-06 11 46900852 46900852 G A LRP4 Silent p.S943S 0.40 TCGA-DA-A1I7-06 11 48239105 48239105 T C OR4B1 Silent p.F248F 0.21 TCGA-DA-A1I7-06 11 540700 540700 G A LRRC56 Missense_Mutation p.D6N 0.27 tolerated(0.29) benign(0.059) TCGA-DA-A1I7-06 11 541584 541584 G C LRRC56 Missense_Mutation p.E75D 0.23 tolerated(0.05) benign(0.098) TCGA-DA-A1I7-06 11 56344979 56344979 A G OR5M10 Silent p.Y73Y 0.23 TCGA-DA-A1I7-06 11 5686856 5686856 G A TRIM5 Intron 0.30 TCGA-DA-A1I7-06 11 5776758 5776758 C T OR52N4 Missense_Mutation p.S263F 0.28 deleterious(0.04) benign(0.013) TCGA-DA-A1I7-06 11 57947403 57947403 G A OR9Q1 Missense_Mutation p.A163T 0.45 tolerated(1) benign(0.277) TCGA-DA-A1I7-06 11 58477266 58477266 C T GLYAT Nonsense_Mutation p.W288* 0.25 TCGA-DA-A1I7-06 11 58714580 58714580 C T GLYATL1 Intron 0.19 TCGA-DA-A1I7-06 11 63143144 63143144 C T SLC22A9 Silent p.L286L 0.15 TCGA-DA-A1I7-06 11 64056683 64056683 C T GPR137 Missense_Mutation p.P425L 0.20 tolerated_low_confidence(0.06) probably_damaging(0.958) TCGA-DA-A1I7-06 11 66103267 66103267 G A RIN1 Silent p.F116F 0.42 TCGA-DA-A1I7-06 11 66113990 66113990 G A B3GNT1 Missense_Mutation p.R343W 0.39 deleterious(0) probably_damaging(0.971) TCGA-DA-A1I7-06 11 67223192 67223192 C T CABP4 Missense_Mutation p.R100C 0.38 deleterious(0.03) benign(0.027) TCGA-DA-A1I7-06 11 70331907 70331907 C T SHANK2 Silent p.R1498R 0.48 TCGA-DA-A1I7-06 11 72292005 72292005 G A PDE2A Silent p.I686I 0.19 TCGA-DA-A1I7-06 11 73715038 73715038 G C UCP3 Missense_Mutation p.H220D 0.21 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I7-06 11 74880348 74880348 C T SLCO2B1 Silent p.F193F 0.48 TCGA-DA-A1I7-06 11 75439858 75439858 C T MOGAT2 Missense_Mutation p.S225F 0.25 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I7-06 11 76370616 76370616 C T LRRC32 3'UTR 0.32 TCGA-DA-A1I7-06 11 76804825 76804825 C T CAPN5 Missense_Mutation p.S88L 0.52 deleterious(0) probably_damaging(0.955) TCGA-DA-A1I7-06 11 7984855 7984855 G A NLRP10 Missense_Mutation p.S63L 0.25 tolerated(0.31) benign(0.003) TCGA-DA-A1I7-06 11 82693213 82693213 G A RAB30 Silent p.F202F 0.21 TCGA-DA-A1I7-06 11 8704277 8704277 G A RPL27A 5'UTR 0.30 TCGA-DA-A1I7-06 11 88337902 88337902 C T GRM5 Missense_Mutation p.G460R 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 11 92573801 92573801 C T FAT3 Missense_Mutation p.P3481L 0.21 probably_damaging(1) TCGA-DA-A1I7-06 11 94318641 94318641 T C PIWIL4 Silent p.I222I 0.19 TCGA-DA-A1I7-06 11 94862342 94862342 G A ENDOD1 Missense_Mutation p.V368M 0.12 deleterious(0.02) possibly_damaging(0.577) TCGA-DA-A1I7-06 12 100200442 100200442 G A ANKS1B Nonsense_Mutation p.Q137* 0.30 TCGA-DA-A1I7-06 12 102302061 102302061 C T DRAM1 Missense_Mutation p.S147L 0.17 tolerated(0.14) benign(0.257) TCGA-DA-A1I7-06 12 108589750 108589750 G A WSCD2 Silent p.G47G 0.44 TCGA-DA-A1I7-06 12 11183944 11183944 G A TAS2R31 5'UTR 0.48 TCGA-DA-A1I7-06 12 121098114 121098114 C T CABP1 Silent p.I267I 0.43 TCGA-DA-A1I7-06 12 133448935 133448935 C T CHFR Silent p.Q93Q 0.45 TCGA-DA-A1I7-06 12 13906490 13906490 G A GRIN2B Silent p.I257I 0.50 TCGA-DA-A1I7-06 12 21229492 21229492 C T SLCO1B7 Silent p.S571S 0.52 TCGA-DA-A1I7-06 12 32755164 32755164 T A FGD4 Nonsense_Mutation p.Y302* 0.12 TCGA-DA-A1I7-06 12 40704392 40704392 G A LRRK2 Missense_Mutation p.E1493K 0.23 deleterious(0.01) possibly_damaging(0.496) TCGA-DA-A1I7-06 12 49742682 49742682 T C DNAJC22 Silent p.Y9Y 0.20 TCGA-DA-A1I7-06 12 50232547 50232547 G A BCDIN3D Silent p.F162F 0.20 TCGA-DA-A1I7-06 12 52760939 52760939 G A KRT85 Missense_Mutation p.S84F 0.36 tolerated(0.3) benign(0.001) TCGA-DA-A1I7-06 12 52994971 52994971 G A KRT72 Missense_Mutation p.P89L 0.29 tolerated(0.18) probably_damaging(0.999) TCGA-DA-A1I7-06 12 53449380 53449380 A - TENC1 Frame_Shift_Del p.H211Lfs*97 0.32 TCGA-DA-A1I7-06 12 53552463 53552463 G A CSAD Silent p.A465A 0.44 TCGA-DA-A1I7-06 12 53687327 53687327 C T ESPL1 3'UTR 0.32 TCGA-DA-A1I7-06 12 54920345 54920345 G A NCKAP1L Silent p.T730T 0.37 TCGA-DA-A1I7-06 12 6230478 6230478 C G VWF Missense_Mutation p.G28R 0.45 tolerated(0.1) possibly_damaging(0.478) TCGA-DA-A1I7-06 12 6690874 6690874 G A CHD4 Missense_Mutation p.P1541L 0.54 deleterious(0.01) possibly_damaging(0.908) TCGA-DA-A1I7-06 12 69746970 69746970 C T LYZ Missense_Mutation p.R140C 0.19 deleterious(0) benign(0.424) TCGA-DA-A1I7-06 12 75444313 75444313 C A KCNC2 Missense_Mutation p.R491M 0.16 deleterious(0) possibly_damaging(0.88) TCGA-DA-A1I7-06 12 7559384 7559384 C T CD163L1 Silent p.L277L 0.29 TCGA-DA-A1I7-06 12 7970528 7970528 C T SLC2A14 Missense_Mutation p.E415K 0.24 deleterious(0.02) possibly_damaging(0.798) TCGA-DA-A1I7-06 12 81734965 81734965 C T PPFIA2 Missense_Mutation p.G762D 0.28 tolerated(0.34) benign(0.007) TCGA-DA-A1I7-06 12 93968909 93968909 C T SOCS2 Missense_Mutation p.P184L 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 12 97114192 97114192 C T C12orf55 Silent p.L2272L 0.25 TCGA-DA-A1I7-06 12 99640266 99640266 C T ANKS1B Silent p.E711E 0.22 TCGA-DA-A1I7-06 13 25743659 25743659 G A AMER2 3'UTR 0.25 TCGA-DA-A1I7-06 13 30341326 30341326 G T UBL3 3'UTR 0.10 TCGA-DA-A1I7-06 13 32376445 32376445 C T RXFP2 Missense_Mutation p.S723F 0.20 tolerated(0.1) possibly_damaging(0.877) TCGA-DA-A1I7-06 13 33700324 33700324 G A STARD13 Missense_Mutation p.A659V 0.45 tolerated(0.09) benign(0.016) TCGA-DA-A1I7-06 13 41932585 41932585 C A NAA16 Missense_Mutation p.F411L 0.13 tolerated(0.17) benign(0.261) TCGA-DA-A1I7-06 13 43918689 43918689 C T ENOX1 Missense_Mutation p.G341R 0.39 deleterious(0.01) benign(0.005) TCGA-DA-A1I7-06 13 75861125 75861125 G A TBC1D4 Silent p.L1234L 0.18 TCGA-DA-A1I7-06 14 101200851 101200851 G A DLK1 Missense_Mutation p.R257H 0.20 tolerated(0.23) benign(0.002) TCGA-DA-A1I7-06 14 106066504 106066504 C T IGHE Missense_Mutation p.E396K 0.41 tolerated(0.49) benign(0.385) TCGA-DA-A1I7-06 14 106331449 106331449 G A IGHJ2 Silent p.F4F 0.48 TCGA-DA-A1I7-06 14 106586249 106586249 G A IGHV3-13 Missense_Mutation p.P79L 0.35 deleterious_low_confidence(0.01) benign(0.003) TCGA-DA-A1I7-06 14 20612558 20612558 C T OR4N5 Missense_Mutation p.L222F 0.32 deleterious(0.01) benign(0.12) TCGA-DA-A1I7-06 14 20665797 20665797 C T OR11G2 Silent p.L101L 0.12 TCGA-DA-A1I7-06 14 21463363 21463363 C T METTL17 Missense_Mutation p.L306F 0.32 deleterious(0) probably_damaging(0.984) TCGA-DA-A1I7-06 14 21501931 21501931 G A RP11-998D10.1 Nonsense_Mutation p.W89* 0.34 TCGA-DA-A1I7-06 14 21623513 21623513 G A OR5AU1 Silent p.V224V 0.47 TCGA-DA-A1I7-06 14 22363157 22363157 G A TRAV8-4 Silent p.T96T 0.31 TCGA-DA-A1I7-06 14 23588016 23588016 G A CEBPE Silent p.F95F 0.27 TCGA-DA-A1I7-06 14 24806441 24806441 C T RIPK3 Missense_Mutation p.E376K 0.34 tolerated(0.63) benign(0.012) TCGA-DA-A1I7-06 14 32562338 32562338 C T ARHGAP5 Silent p.I821I 0.18 TCGA-DA-A1I7-06 14 70522526 70522526 G A SLC8A3 Silent p.L631L 0.27 TCGA-DA-A1I7-06 14 73685906 73685906 C T PSEN1 Missense_Mutation p.S438F 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 14 81744845 81744845 C T STON2 Missense_Mutation p.M270I 0.30 tolerated_low_confidence(0.44) benign(0) TCGA-DA-A1I7-06 14 88478080 88478080 G A GPR65 Missense_Mutation p.G297R 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1I7-06 14 92091309 92091309 C T CATSPERB Silent p.T595T 0.24 TCGA-DA-A1I7-06 14 94041526 94041526 G A UNC79 Silent p.G554G 0.39 TCGA-DA-A1I7-06 14 94754765 94754765 G A SERPINA10 Missense_Mutation p.R284C 0.30 deleterious(0) possibly_damaging(0.881) TCGA-DA-A1I7-06 14 94849309 94849309 G A SERPINA1 Missense_Mutation p.S89F 0.30 deleterious(0) probably_damaging(0.988) TCGA-DA-A1I7-06 15 26107818 26107818 G A ATP10A Silent p.H142H 0.53 TCGA-DA-A1I7-06 15 34547529 34547529 G A SLC12A6 Silent p.L270L 0.15 TCGA-DA-A1I7-06 15 40705279 40705279 G A IVD Silent p.K262K 0.21 TCGA-DA-A1I7-06 15 41483671 41483671 G A EXD1 Missense_Mutation p.S220F 0.13 tolerated(0.07) benign(0.098) TCGA-DA-A1I7-06 15 41643263 41643263 A T NUSAP1 Missense_Mutation p.R128S 0.38 tolerated(0.37) benign(0.02) TCGA-DA-A1I7-06 15 42193093 42193093 G A EHD4 Missense_Mutation p.S459L 0.16 tolerated(0.11) benign(0.164) TCGA-DA-A1I7-06 15 45394069 45394069 G A DUOX2 Missense_Mutation p.H925Y 0.23 tolerated(0.05) probably_damaging(0.993) TCGA-DA-A1I7-06 15 49293284 49293284 G A SECISBP2L Nonsense_Mutation p.Q680* 0.12 TCGA-DA-A1I7-06 15 51503156 51503163 AGTGTAAC - CYP19A1 Frame_Shift_Del p.V452Sfs*15 0.40 TCGA-DA-A1I7-06 15 51828531 51828531 G A DMXL2 Missense_Mutation p.H716Y 0.52 tolerated(0.22) benign(0.024) TCGA-DA-A1I7-06 15 65490866 65490866 G A CILP Silent p.I586I 0.17 TCGA-DA-A1I7-06 15 72227785 72227785 G A MYO9A Missense_Mutation p.R807C 0.69 deleterious(0) possibly_damaging(0.656) TCGA-DA-A1I7-06 15 73624501 73624501 C T HCN4 Missense_Mutation p.D448N 0.56 tolerated(0.16) unknown(0) TCGA-DA-A1I7-06 15 74653905 74653905 A C CYP11A1 Intron 0.24 TCGA-DA-A1I7-06 15 75562412 75562412 G A GOLGA6C Splice_Site p.X652_splice 0.17 TCGA-DA-A1I7-06 15 76494549 76494549 C T C15orf27 Missense_Mutation p.T322M 0.50 tolerated_low_confidence(0.17) benign(0.005) TCGA-DA-A1I7-06 15 89398802 89398802 C T ACAN Missense_Mutation p.P996S 0.44 tolerated(0.06) possibly_damaging(0.474) TCGA-DA-A1I7-06 15 89400699 89400699 G A ACAN Missense_Mutation p.G1628E 0.15 tolerated(0.08) possibly_damaging(0.831) TCGA-DA-A1I7-06 15 90328627 90328627 C T ANPEP Missense_Mutation p.E953K 0.13 tolerated(0.13) benign(0.002) TCGA-DA-A1I7-06 16 12618696 12618696 C T SNX29 Silent p.F772F 0.16 TCGA-DA-A1I7-06 16 19468037 19468037 C T TMC5 Intron 0.50 TCGA-DA-A1I7-06 16 20570742 20570742 G A ACSM2B Silent p.L69L 0.33 TCGA-DA-A1I7-06 16 23226713 23226713 C T SCNN1G Missense_Mutation p.P625S 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 16 24931540 24931540 G A ARHGAP17 Missense_Mutation p.P853S 0.21 tolerated_low_confidence(0.28) benign(0) TCGA-DA-A1I7-06 16 30507776 30507776 T A ITGAL Missense_Mutation p.V574E 0.22 deleterious(0) possibly_damaging(0.714) TCGA-DA-A1I7-06 16 314837 314837 C T ITFG3 Missense_Mutation p.A492V 0.31 deleterious(0) probably_damaging(0.956) TCGA-DA-A1I7-06 16 3614061 3614061 C T NLRC3 Missense_Mutation p.E340K 0.20 tolerated(0.11) possibly_damaging(0.837) TCGA-DA-A1I7-06 16 4786528 4786528 G A C16orf71 Missense_Mutation p.D5N 0.30 tolerated(0.07) benign(0.001) TCGA-DA-A1I7-06 16 4938190 4938190 C T PPL Silent p.R809R 0.21 TCGA-DA-A1I7-06 16 58577803 58577803 G A CNOT1 Missense_Mutation p.P1381L 0.56 tolerated(0.05) benign(0.005) TCGA-DA-A1I7-06 16 68021586 68021586 G A DPEP2 Silent p.S428S 0.43 TCGA-DA-A1I7-06 16 71012930 71012930 C T HYDIN Missense_Mutation p.E1509K 0.42 benign(0.058) TCGA-DA-A1I7-06 16 72184683 72184683 C T PMFBP1 Missense_Mutation p.G154R 0.43 tolerated(0.18) possibly_damaging(0.906) TCGA-DA-A1I7-06 16 77331198 77331198 G A ADAMTS18 Missense_Mutation p.S930F 0.38 deleterious(0) benign(0.396) TCGA-DA-A1I7-06 16 77918616 77918616 C T VAT1L Missense_Mutation p.R332W 0.46 deleterious(0.01) possibly_damaging(0.713) TCGA-DA-A1I7-06 16 81077419 81077419 C G ATMIN Missense_Mutation p.S439C 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1I7-06 16 81183453 81183453 C T PKD1L2 RNA 0.19 TCGA-DA-A1I7-06 16 81819628 81819628 G A PLCG2 Missense_Mutation p.E12K 0.29 deleterious(0.01) possibly_damaging(0.856) TCGA-DA-A1I7-06 16 84227562 84227562 C T ADAD2 Intron 0.39 TCGA-DA-A1I7-06 16 84256488 84256488 C T KCNG4 Missense_Mutation p.D299N 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 16 84902464 84902464 C T CRISPLD2 Silent p.V287V 0.11 TCGA-DA-A1I7-06 16 87677904 87677904 C T JPH3 Silent p.G141G 0.47 TCGA-DA-A1I7-06 16 87938439 87938439 C T CA5A Missense_Mutation p.E138K 0.22 tolerated(0.2) benign(0.302) TCGA-DA-A1I7-06 16 8829605 8829605 C T ABAT Silent p.S3S 0.28 TCGA-DA-A1I7-06 16 88876893 88876893 G C APRT Missense_Mutation p.R87G 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 16 90025448 90025448 C T DEF8 Silent p.I194I 0.43 TCGA-DA-A1I7-06 17 10304912 10304912 A G MYH8 Missense_Mutation p.L960P 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 17 10400637 10400637 C T MYH1 Missense_Mutation p.E1500K 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 17 10408497 10408497 C T MYH1 Silent p.Q806Q 0.32 TCGA-DA-A1I7-06 17 10532921 10532921 G A MYH3 Missense_Mutation p.S1930F 0.26 tolerated_low_confidence(0.11) benign(0.048) TCGA-DA-A1I7-06 17 12656204 12656204 G A MYOCD Nonsense_Mutation p.W533* 0.31 TCGA-DA-A1I7-06 17 12888042 12888042 C T ARHGAP44 Missense_Mutation p.P712S 0.48 tolerated_low_confidence(1) benign(0.001) TCGA-DA-A1I7-06 17 15517324 15517324 G A RP11-385D13.1 Missense_Mutation p.R542W 0.22 deleterious_low_confidence(0) benign(0.335) TCGA-DA-A1I7-06 17 16612455 16612455 C T CCDC144A Missense_Mutation p.P362S 0.37 tolerated(0.06) possibly_damaging(0.857) TCGA-DA-A1I7-06 17 18051410 18051410 G A MYO15A Missense_Mutation p.G2193S 0.35 unknown(0) TCGA-DA-A1I7-06 17 18140988 18140988 C T LLGL1 Missense_Mutation p.T602I 0.34 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I7-06 17 18183948 18183948 G A TOP3A Silent p.F682F 0.30 TCGA-DA-A1I7-06 17 18565293 18565293 G A ZNF286B Missense_Mutation p.S509F 0.20 deleterious(0.02) possibly_damaging(0.59) TCGA-DA-A1I7-06 17 19646717 19646717 C T ALDH3A1 Missense_Mutation p.M74I 0.34 tolerated(0.26) benign(0.011) TCGA-DA-A1I7-06 17 21319617 21319617 C T KCNJ12 Silent p.I321I 0.14 TCGA-DA-A1I7-06 17 21730947 21730947 C T UBBP4 Silent p.T83T 0.21 TCGA-DA-A1I7-06 17 27383231 27383231 C T PIPOX Silent p.L361L 0.29 TCGA-DA-A1I7-06 17 3119386 3119386 C T OR1A1 Missense_Mutation p.P158S 0.31 tolerated(0.09) benign(0.158) TCGA-DA-A1I7-06 17 32963172 32963172 C T TMEM132E Silent p.I618I 0.48 TCGA-DA-A1I7-06 17 35620751 35620751 G C ACACA Missense_Mutation p.A389G 0.47 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I7-06 17 38857515 38857515 C T KRT24 Silent p.V244V 0.46 TCGA-DA-A1I7-06 17 39538518 39538518 G A KRT34 Missense_Mutation p.S36F 0.45 deleterious(0.03) benign(0.11) TCGA-DA-A1I7-06 17 40958834 40958834 A C CNTD1 Missense_Mutation p.Q241H 0.45 deleterious(0) possibly_damaging(0.789) TCGA-DA-A1I7-06 17 46846537 46846537 G A TTLL6 Silent p.L830L 0.52 TCGA-DA-A1I7-06 17 4805156 4805156 C T C17orf107 3'UTR 0.38 TCGA-DA-A1I7-06 17 5445200 5445200 C T NLRP1 Silent p.P892P 0.29 TCGA-DA-A1I7-06 17 56772556 56772556 A G RAD51C Intron 0.19 TCGA-DA-A1I7-06 17 61987459 61987459 C T CSHL1 Intron 0.23 TCGA-DA-A1I7-06 17 66871424 66871430 GAAAAGC AAAGA ABCA8 Frame_Shift_Del p.R1494Sfs*18 0.26 TCGA-DA-A1I7-06 17 6716370 6716370 G A TEKT1 Missense_Mutation p.S211F 0.37 tolerated(0.15) benign(0.366) TCGA-DA-A1I7-06 17 6718550 6718550 G A TEKT1 Silent p.I187I 0.33 TCGA-DA-A1I7-06 17 6929847 6929847 C T BCL6B Missense_Mutation p.P321S 0.33 tolerated(0.81) benign(0.001) TCGA-DA-A1I7-06 17 71228278 71228278 C T FAM104A Silent p.A56A 0.29 TCGA-DA-A1I7-06 17 71346892 71346892 G A SDK2 Silent p.F1932F 0.28 TCGA-DA-A1I7-06 17 72305577 72305577 C T DNAI2 Intron 0.35 TCGA-DA-A1I7-06 17 72436352 72436352 G A GPRC5C Missense_Mutation p.R191Q 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1I7-06 17 73827358 73827358 G A UNC13D Missense_Mutation p.S840F 0.16 tolerated(0.71) benign(0.126) TCGA-DA-A1I7-06 17 74868898 74868898 C T MGAT5B Missense_Mutation p.P23S 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-DA-A1I7-06 17 77039962 77039962 C T C1QTNF1 Intron 0.48 TCGA-DA-A1I7-06 17 77082081 77082081 C T ENGASE Missense_Mutation p.R628C 0.22 tolerated(0.19) benign(0.006) TCGA-DA-A1I7-06 17 77768994 77768994 G A CBX8 Missense_Mutation p.R204W 0.21 deleterious(0) possibly_damaging(0.689) TCGA-DA-A1I7-06 17 77768995 77768995 G A CBX8 Silent p.P203P 0.21 TCGA-DA-A1I7-06 18 29037053 29037053 G A DSG3 Missense_Mutation p.G61E 0.44 tolerated(0.57) benign(0.023) TCGA-DA-A1I7-06 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.03 deleterious(0.03) probably_damaging(0.971) TCGA-DA-A1I7-06 18 50985644 50985644 G A DCC Silent p.Q1145Q 0.64 TCGA-DA-A1I7-06 18 55024592 55024592 C T ST8SIA3 Missense_Mutation p.H251Y 0.60 probably_damaging(0.983) TCGA-DA-A1I7-06 19 10116637 10116637 G A COL5A3 Missense_Mutation p.S91F 0.40 unknown(0) TCGA-DA-A1I7-06 19 11210922 11210922 G A LDLR Missense_Mutation p.E31K 0.21 tolerated(0.08) benign(0.358) TCGA-DA-A1I7-06 19 15905589 15905589 C T OR10H5 Missense_Mutation p.S244F 0.44 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I7-06 19 18085944 18085944 C T KCNN1 Missense_Mutation p.S149F 0.12 deleterious(0) probably_damaging(0.968) TCGA-DA-A1I7-06 19 18331715 18331715 G T PDE4C Missense_Mutation p.N188K 0.16 tolerated(0.27) benign(0.001) TCGA-DA-A1I7-06 19 2076834 2076834 G A MOB3A Silent p.I200I 0.58 TCGA-DA-A1I7-06 19 3527749 3527749 C A FZR1 Silent p.S197S 0.31 TCGA-DA-A1I7-06 19 36369521 36369521 G A APLP1 Missense_Mutation p.E539K 0.12 tolerated(0.59) benign(0.281) TCGA-DA-A1I7-06 19 38795318 38795318 G A C19orf33 Missense_Mutation p.D65N 0.34 tolerated_low_confidence(0.23) benign(0.003) TCGA-DA-A1I7-06 19 40411937 40411937 G A FCGBP Missense_Mutation p.P1231S 0.33 probably_damaging(0.951) TCGA-DA-A1I7-06 19 40433468 40433468 G A FCGBP Silent p.F267F 0.46 TCGA-DA-A1I7-06 19 42931222 42931222 G A LIPE Missense_Mutation p.P27L 0.43 tolerated_low_confidence(0.09) benign(0.012) TCGA-DA-A1I7-06 19 42931223 42931223 G A LIPE Missense_Mutation p.P27S 0.42 tolerated_low_confidence(0.1) benign(0.021) TCGA-DA-A1I7-06 19 43688966 43688966 C T PSG5 Missense_Mutation p.G133E 0.24 tolerated(1) benign(0.158) TCGA-DA-A1I7-06 19 43762487 43762487 C T PSG9 Silent p.G370G 0.40 TCGA-DA-A1I7-06 19 44111830 44111830 G A ZNF428 Missense_Mutation p.S169F 0.16 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DA-A1I7-06 19 45284596 45284596 C T CBLC Silent p.F211F 0.21 TCGA-DA-A1I7-06 19 49439433 49439433 G A DHDH Missense_Mutation p.R116Q 0.08 tolerated(0.11) benign(0.018) TCGA-DA-A1I7-06 19 49473833 49473833 G A GYS1 Silent p.S593S 0.20 TCGA-DA-A1I7-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.25 TCGA-DA-A1I7-06 19 50464043 50464043 C T SIGLEC11 Missense_Mutation p.G76R 0.30 tolerated(0.37) benign(0.008) TCGA-DA-A1I7-06 19 51512824 51512824 C T KLK9 5'UTR 0.36 TCGA-DA-A1I7-06 19 51986421 51986421 A G CEACAM18 Missense_Mutation p.N336S 0.22 tolerated(1) benign(0.032) TCGA-DA-A1I7-06 19 52002861 52002861 C T SIGLEC12 Silent p.T306T 0.39 TCGA-DA-A1I7-06 19 54314203 54314203 C A NLRP12 Missense_Mutation p.G237V 0.29 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I7-06 19 54314204 54314204 C T NLRP12 Missense_Mutation p.G237R 0.27 deleterious(0.01) possibly_damaging(0.784) TCGA-DA-A1I7-06 19 54403571 54403571 C T PRKCG Missense_Mutation p.H456Y 0.27 tolerated(0.12) probably_damaging(0.984) TCGA-DA-A1I7-06 19 54759989 54759989 C T LILRB5 Nonsense_Mutation p.W191* 0.49 TCGA-DA-A1I7-06 19 55085818 55085818 C T LILRA2 Nonsense_Mutation p.Q41* 0.36 TCGA-DA-A1I7-06 19 55143633 55143633 G A LILRB1 Silent p.S202S 0.21 TCGA-DA-A1I7-06 19 57022896 57022896 C T ZNF471 5'UTR 0.47 TCGA-DA-A1I7-06 19 57175219 57175219 C T ZNF835 Missense_Mutation p.E450K 0.23 deleterious(0.02) benign(0.021) TCGA-DA-A1I7-06 19 58420358 58420358 G A ZNF417 Missense_Mutation p.H430Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I7-06 19 7518552 7518552 C T ARHGEF18 Silent p.L497L 0.13 TCGA-DA-A1I7-06 19 7913942 7913942 C T EVI5L Missense_Mutation p.R155C 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 19 8807924 8807924 C T ACTL9 Silent p.R376R 0.39 TCGA-DA-A1I7-06 19 8995663 8995663 C T MUC16 Silent p.K13775K 0.20 TCGA-DA-A1I7-06 19 9060353 9060353 C T MUC16 Silent p.T9031T 0.48 TCGA-DA-A1I7-06 19 9061972 9061972 C T MUC16 Missense_Mutation p.E8492K 0.25 unknown(0) TCGA-DA-A1I7-06 19 9076695 9076695 G A MUC16 Missense_Mutation p.S3584F 0.24 unknown(0) TCGA-DA-A1I7-06 19 9084523 9084523 G A MUC16 Missense_Mutation p.S2431F 0.50 unknown(0) TCGA-DA-A1I7-06 19 9325330 9325330 A G OR7D4 Missense_Mutation p.F62L 0.22 deleterious(0.01) benign(0.32) TCGA-DA-A1I7-06 1 110740760 110740760 C T SLC6A17 Silent p.V626V 0.53 TCGA-DA-A1I7-06 1 110765757 110765757 A G KCNC4 Missense_Mutation p.I284V 0.51 tolerated(1) benign(0.092) TCGA-DA-A1I7-06 1 147230415 147230415 C T GJA5 Missense_Mutation p.G311D 0.26 tolerated(0.6) benign(0.005) TCGA-DA-A1I7-06 1 151109048 151109048 C A SEMA6C Missense_Mutation p.G328C 0.11 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I7-06 1 151779944 151779944 C T RORC 3'UTR 0.12 TCGA-DA-A1I7-06 1 156843583 156843583 G A NTRK1 Missense_Mutation p.A337T 0.42 tolerated(0.67) benign(0.012) TCGA-DA-A1I7-06 1 156918202 156918202 G A ARHGEF11 Missense_Mutation p.R672C 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A1I7-06 1 157805893 157805893 C T CD5L Silent p.R36R 0.25 TCGA-DA-A1I7-06 1 158299806 158299806 G A CD1B Missense_Mutation p.S148L 0.30 deleterious(0.02) benign(0.029) TCGA-DA-A1I7-06 1 158325195 158325195 C T CD1E Missense_Mutation p.S154F 0.15 deleterious(0) possibly_damaging(0.743) TCGA-DA-A1I7-06 1 159558215 159558215 G T APCS Missense_Mutation p.G130V 0.14 deleterious(0) probably_damaging(0.994) TCGA-DA-A1I7-06 1 160054185 160054185 G A KCNJ9 Missense_Mutation p.G122D 0.16 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I7-06 1 160850449 160850449 G A ITLN1 Missense_Mutation p.P205L 0.31 tolerated(0.07) benign(0.092) TCGA-DA-A1I7-06 1 162325117 162325117 G A NOS1AP Missense_Mutation p.E246K 0.20 tolerated(0.33) benign(0.004) TCGA-DA-A1I7-06 1 177226401 177226401 G A BRINP2 Missense_Mutation p.G184R 0.40 tolerated(0.06) possibly_damaging(0.773) TCGA-DA-A1I7-06 1 179316752 179316752 C T SOAT1 Missense_Mutation p.L379F 0.42 deleterious(0.01) probably_damaging(0.976) TCGA-DA-A1I7-06 1 184764653 184764653 C T FAM129A Missense_Mutation p.E749K 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.615) TCGA-DA-A1I7-06 1 18808424 18808424 C T KLHDC7A Missense_Mutation p.P317S 0.52 tolerated(0.17) benign(0.059) TCGA-DA-A1I7-06 1 19969884 19969884 G A NBL1 Missense_Mutation p.G27R 0.47 tolerated_low_confidence(0.13) benign(0.441) TCGA-DA-A1I7-06 1 200972894 200972894 G A KIF21B Silent p.I344I 0.18 TCGA-DA-A1I7-06 1 201061138 201061138 C T CACNA1S Missense_Mutation p.R168Q 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-DA-A1I7-06 1 203192347 203192347 C T CHIT1 Missense_Mutation p.G174E 0.30 deleterious(0.05) probably_damaging(0.946) TCGA-DA-A1I7-06 1 203669940 203669940 G A ATP2B4 Missense_Mutation p.E264K 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1I7-06 1 204953262 204953262 G A NFASC Intron 0.15 TCGA-DA-A1I7-06 1 205493436 205493436 G A CDK18 Missense_Mutation p.S147N 0.17 tolerated(0.08) benign(0.015) TCGA-DA-A1I7-06 1 205814641 205814641 C T PM20D1 Missense_Mutation p.V101M 0.43 deleterious(0.03) possibly_damaging(0.474) TCGA-DA-A1I7-06 1 205895697 205895697 G A SLC26A9 Missense_Mutation p.P452L 0.30 tolerated(0.52) possibly_damaging(0.657) TCGA-DA-A1I7-06 1 205895698 205895698 G A SLC26A9 Missense_Mutation p.P452S 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-DA-A1I7-06 1 206653840 206653840 C T IKBKE Missense_Mutation p.S464F 0.41 tolerated(0.08) benign(0.025) TCGA-DA-A1I7-06 1 207039158 207039158 G A IL20 Intron 0.18 TCGA-DA-A1I7-06 1 213009387 213009387 C T C1orf227 Silent p.V35V 0.17 TCGA-DA-A1I7-06 1 223396907 223396907 G A SUSD4 Silent p.L376L 0.41 TCGA-DA-A1I7-06 1 224473799 224473799 G C NVL Missense_Mutation p.L610V 0.14 tolerated(0.35) benign(0.04) TCGA-DA-A1I7-06 1 226180687 226180687 G A SDE2 Silent p.L85L 0.17 TCGA-DA-A1I7-06 1 228487703 228487703 C T OBSCN Missense_Mutation p.T4532I 0.57 probably_damaging(0.997) TCGA-DA-A1I7-06 1 228559341 228559341 C T OBSCN Silent p.T7911T 0.39 TCGA-DA-A1I7-06 1 233275493 233275493 A T PCNXL2 Missense_Mutation p.F1209Y 0.14 tolerated(0.53) possibly_damaging(0.565) TCGA-DA-A1I7-06 1 24200985 24200985 G A CNR2 3'UTR 0.32 TCGA-DA-A1I7-06 1 2445459 2445459 G A PANK4 Silent p.F519F 0.50 TCGA-DA-A1I7-06 1 246887838 246887838 C T SCCPDH Silent p.S38S 0.36 TCGA-DA-A1I7-06 1 247065863 247065863 G A AHCTF1 Nonsense_Mutation p.R370* 0.25 TCGA-DA-A1I7-06 1 247902770 247902770 C T OR14K1 Missense_Mutation p.P285L 0.40 deleterious(0) probably_damaging(0.988) TCGA-DA-A1I7-06 1 248436220 248436220 C T OR2T33 Silent p.L299L 0.31 TCGA-DA-A1I7-06 1 248487313 248487313 G A OR2M7 Silent p.I186I 0.15 TCGA-DA-A1I7-06 1 248756644 248756644 G A OR2T10 Silent p.L142L 0.32 TCGA-DA-A1I7-06 1 3319548 3319548 C T PRDM16 Silent p.F290F 0.43 TCGA-DA-A1I7-06 1 33797949 33797949 G A PHC2 Silent p.F605F 0.42 TCGA-DA-A1I7-06 1 34087804 34087804 G A CSMD2 Silent p.I1890I 0.52 TCGA-DA-A1I7-06 1 36358768 36358768 C T AGO1 Missense_Mutation p.A134V 0.54 deleterious(0) benign(0.286) TCGA-DA-A1I7-06 1 37267569 37267569 C T GRIK3 Silent p.Q881Q 0.48 TCGA-DA-A1I7-06 1 38465046 38465046 G A FHL3 Silent p.S13S 0.27 TCGA-DA-A1I7-06 1 42049328 42049328 G A HIVEP3 Silent p.L381L 0.21 TCGA-DA-A1I7-06 1 43296563 43296563 C T ERMAP Silent p.F70F 0.59 TCGA-DA-A1I7-06 1 72163761 72163761 C T NEGR1 Silent p.G199G 0.57 TCGA-DA-A1I7-06 1 87104551 87104551 C T RP4-651E10.4 Intron 0.63 TCGA-DA-A1I7-06 1 94964161 94964161 C T ABCD3 Nonsense_Mutation p.R464* 0.30 TCGA-DA-A1I7-06 20 10030179 10030179 C T ANKEF1 Missense_Mutation p.P321L 0.46 tolerated(0.07) benign(0.215) TCGA-DA-A1I7-06 20 14306629 14306629 G A FLRT3 Silent p.N508N 0.37 TCGA-DA-A1I7-06 20 1460549 1460549 C T SIRPB2 Missense_Mutation p.E83K 0.30 tolerated(0.19) probably_damaging(0.975) TCGA-DA-A1I7-06 20 18005267 18005267 C T OVOL2 3'UTR 0.43 TCGA-DA-A1I7-06 20 19665880 19665880 G A SLC24A3 Missense_Mutation p.R400K 0.22 tolerated(0.39) benign(0.05) TCGA-DA-A1I7-06 20 19955746 19955746 C T RIN2 Silent p.P408P 0.19 TCGA-DA-A1I7-06 20 19955747 19955747 C T RIN2 Missense_Mutation p.R409W 0.21 deleterious(0) benign(0.087) TCGA-DA-A1I7-06 20 20056175 20056175 C T C20orf26 Missense_Mutation p.P161L 0.34 deleterious(0.02) possibly_damaging(0.619) TCGA-DA-A1I7-06 20 21349172 21349172 G C XRN2 Missense_Mutation p.G843A 0.25 tolerated_low_confidence(0.23) benign(0.039) TCGA-DA-A1I7-06 20 25656459 25656459 C T ZNF337 Missense_Mutation p.G489R 0.24 tolerated(0.51) probably_damaging(0.988) TCGA-DA-A1I7-06 20 29847269 29847269 G A DEFB115 Nonsense_Mutation p.W34* 0.16 TCGA-DA-A1I7-06 20 29891192 29891192 T A DEFB116 Missense_Mutation p.Q44H 0.13 tolerated(0.55) benign(0.001) TCGA-DA-A1I7-06 20 29965143 29965143 G A DEFB118 3'Flank 0.54 TCGA-DA-A1I7-06 20 33162970 33162970 A G PIGU Missense_Mutation p.Y378H 0.32 deleterious(0) benign(0.048) TCGA-DA-A1I7-06 20 33586421 33586421 G A MYH7B Missense_Mutation p.E1370K 0.19 probably_damaging(0.997) TCGA-DA-A1I7-06 20 36954768 36954768 C T BPI Silent p.A369A 0.21 TCGA-DA-A1I7-06 20 37356631 37356631 C T SLC32A1 Silent p.S309S 0.27 TCGA-DA-A1I7-06 20 44506200 44506200 C T ZSWIM3 Silent p.L335L 0.22 TCGA-DA-A1I7-06 20 45242182 45242182 G A SLC13A3 Silent p.I98I 0.22 TCGA-DA-A1I7-06 20 45927622 45927622 G A ZMYND8 Missense_Mutation p.P102S 0.29 deleterious(0) probably_damaging(0.995) TCGA-DA-A1I7-06 20 47558509 47558509 C T ARFGEF2 Silent p.S87S 0.24 TCGA-DA-A1I7-06 20 51871441 51871441 G A TSHZ2 Missense_Mutation p.E482K 0.27 tolerated(0.2) benign(0.007) TCGA-DA-A1I7-06 20 57766753 57766753 G A ZNF831 Missense_Mutation p.E227K 0.24 tolerated(0.05) benign(0.024) TCGA-DA-A1I7-06 20 61143756 61143756 G A C20orf166 5'Flank 0.24 TCGA-DA-A1I7-06 20 742387 742387 G A SLC52A3 Silent p.P385P 0.33 TCGA-DA-A1I7-06 20 9288477 9288477 G A PLCB4 Missense_Mutation p.E6K 0.25 tolerated(0.09) possibly_damaging(0.763) TCGA-DA-A1I7-06 21 10952951 10952951 C T TPTE Silent p.K82K 0.11 TCGA-DA-A1I7-06 21 30959753 30959753 G A GRIK1 Missense_Mutation p.P576S 0.40 tolerated(0.1) possibly_damaging(0.871) TCGA-DA-A1I7-06 21 46078207 46078207 G A KRTAP12-3 3'UTR 0.26 TCGA-DA-A1I7-06 22 19838874 19838874 G A C22orf29 Missense_Mutation p.S304L 0.26 tolerated(0.07) benign(0.001) TCGA-DA-A1I7-06 22 26688745 26688745 C T SEZ6L Silent p.L156L 0.24 TCGA-DA-A1I7-06 22 26707860 26707860 G A SEZ6L Missense_Mutation p.G603D 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 22 38273740 38273740 C A EIF3L Silent p.P379P 0.28 TCGA-DA-A1I7-06 22 38870562 38870562 C T KDELR3 Silent p.L42L 0.46 TCGA-DA-A1I7-06 22 38934573 38934573 G A DMC1 Missense_Mutation p.H211Y 0.27 tolerated(0.22) benign(0.008) TCGA-DA-A1I7-06 22 44966447 44966447 G A LINC00207 RNA 0.55 TCGA-DA-A1I7-06 22 46614165 46614165 C T PPARA Silent p.F125F 0.52 TCGA-DA-A1I7-06 22 51160649 51160649 C T SHANK3 Missense_Mutation p.P1479L 0.48 probably_damaging(0.998) TCGA-DA-A1I7-06 2 113819753 113819753 C A IL36RN Silent p.P56P 0.10 TCGA-DA-A1I7-06 2 119729107 119729107 C T MARCO Missense_Mutation p.P153S 0.19 tolerated(0.08) benign(0.071) TCGA-DA-A1I7-06 2 120702673 120702673 G A PTPN4 Missense_Mutation p.G458R 0.18 tolerated(0.68) benign(0.017) TCGA-DA-A1I7-06 2 120702675 120702675 A G PTPN4 Silent p.G458G 0.18 TCGA-DA-A1I7-06 2 128029016 128029016 G A ERCC3 Missense_Mutation p.S614L 0.42 deleterious(0) possibly_damaging(0.843) TCGA-DA-A1I7-06 2 135982014 135982014 C T ZRANB3 Silent p.R744R 0.27 TCGA-DA-A1I7-06 2 137928475 137928475 C T THSD7B Missense_Mutation p.R564C 0.21 deleterious(0) possibly_damaging(0.835) TCGA-DA-A1I7-06 2 148657386 148657386 A T ACVR2A Missense_Mutation p.L149F 0.38 tolerated(0.18) benign(0.037) TCGA-DA-A1I7-06 2 148657389 148657389 T G ACVR2A Missense_Mutation p.I150M 0.39 tolerated(0.05) benign(0.157) TCGA-DA-A1I7-06 2 149247024 149247024 C T MBD5 Missense_Mutation p.P1042S 0.13 tolerated_low_confidence(0.05) unknown(0) TCGA-DA-A1I7-06 2 149247862 149247862 C T MBD5 Missense_Mutation p.S1321F 0.34 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1I7-06 2 1497795 1497795 C T TPO Silent p.L664L 0.23 TCGA-DA-A1I7-06 2 160798644 160798644 C T PLA2R1 Missense_Mutation p.E1391K 0.32 tolerated(0.92) benign(0) TCGA-DA-A1I7-06 2 163000618 163000618 G A GCG Missense_Mutation p.S152F 0.19 deleterious(0) probably_damaging(0.981) TCGA-DA-A1I7-06 2 167108350 167108350 G T SCN9A Missense_Mutation p.P1122T 0.43 tolerated(0.37) benign(0.01) TCGA-DA-A1I7-06 2 167108351 167108351 G A SCN9A Silent p.N1121N 0.42 TCGA-DA-A1I7-06 2 169938402 169938402 A T DHRS9 Missense_Mutation p.K104I 0.42 deleterious(0) benign(0.444) TCGA-DA-A1I7-06 2 179422801 179422801 C T TTN Missense_Mutation p.E29094K 0.16 TCGA-DA-A1I7-06 2 179730571 179730571 G A CCDC141 Missense_Mutation p.R883C 0.21 tolerated(0.14) benign(0.008) TCGA-DA-A1I7-06 2 180311347 180311347 A G ZNF385B Missense_Mutation p.V274A 0.41 tolerated(0.85) benign(0.001) TCGA-DA-A1I7-06 2 187693433 187693433 T G ZSWIM2 Missense_Mutation p.T394P 0.46 deleterious(0.03) benign(0.363) TCGA-DA-A1I7-06 2 207174680 207174680 G A ZDBF2 Missense_Mutation p.D1810N 0.37 tolerated(0.06) benign(0.011) TCGA-DA-A1I7-06 2 207509006 207509006 T C AC010731.4 RNA 0.30 TCGA-DA-A1I7-06 2 215910714 215910714 T A ABCA12 Missense_Mutation p.K240M 0.22 tolerated(0.15) benign(0.013) TCGA-DA-A1I7-06 2 218947953 218947953 G A RUFY4 Missense_Mutation p.M512I 0.47 deleterious(0.03) benign(0.005) TCGA-DA-A1I7-06 2 219221583 219221583 G A C2orf62 5'UTR 0.14 TCGA-DA-A1I7-06 2 220038173 220038173 C T CNPPD1 Missense_Mutation p.G197R 0.35 deleterious(0) probably_damaging(0.989) TCGA-DA-A1I7-06 2 230655878 230655878 G A TRIP12 Missense_Mutation p.S1427F 0.35 deleterious(0) possibly_damaging(0.862) TCGA-DA-A1I7-06 2 231407682 231407682 C T SP100 3'UTR 0.48 TCGA-DA-A1I7-06 2 29294562 29294562 C T C2orf71 Missense_Mutation p.E856K 0.39 tolerated(0.1) benign(0.108) TCGA-DA-A1I7-06 2 48809178 48809178 C T STON1-GTF2A1L Missense_Mutation p.S469F 0.46 tolerated(0.7) possibly_damaging(0.486) TCGA-DA-A1I7-06 2 64147595 64147595 C T VPS54 Missense_Mutation p.R679K 0.36 tolerated(0.08) possibly_damaging(0.751) TCGA-DA-A1I7-06 2 75929487 75929487 G A GCFC2 Nonsense_Mutation p.Q153* 0.43 TCGA-DA-A1I7-06 2 85892775 85892775 G A SFTPB Missense_Mutation p.P191L 0.39 deleterious(0) possibly_damaging(0.542) TCGA-DA-A1I7-06 2 90139107 90139107 G A IGKV1D-16 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-DA-A1I7-06 3 100354664 100354664 A C GPR128 Silent p.S197S 0.17 TCGA-DA-A1I7-06 3 10188264 10188264 T A VHL Missense_Mutation p.F136Y 0.33 tolerated(0.29) possibly_damaging(0.473) TCGA-DA-A1I7-06 3 10280549 10280549 G A IRAK2 Missense_Mutation p.D531N 0.33 deleterious(0) probably_damaging(0.948) TCGA-DA-A1I7-06 3 108076967 108076967 C T HHLA2 Missense_Mutation p.S321L 0.28 deleterious(0) benign(0.396) TCGA-DA-A1I7-06 3 11078619 11078619 G A SLC6A1 Silent p.A589A 0.23 TCGA-DA-A1I7-06 3 111368615 111368615 G A CD96 Missense_Mutation p.E574K 0.13 deleterious(0) benign(0.11) TCGA-DA-A1I7-06 3 119219648 119219648 A T TIMMDC1 Nonsense_Mutation p.K101* 0.34 TCGA-DA-A1I7-06 3 121634084 121634084 G A SLC15A2 Missense_Mutation p.R180Q 0.28 deleterious(0) possibly_damaging(0.782) TCGA-DA-A1I7-06 3 121774339 121774339 G A CD86 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.063) TCGA-DA-A1I7-06 3 122259595 122259595 C T PARP9 Missense_Mutation p.A532T 0.22 tolerated(0.28) benign(0.009) TCGA-DA-A1I7-06 3 136574014 136574014 A T SLC35G2 Missense_Mutation p.I238F 0.28 tolerated(0.08) benign(0.015) TCGA-DA-A1I7-06 3 138179482 138179482 C T ESYT3 Silent p.T256T 0.22 TCGA-DA-A1I7-06 3 150403761 150403761 C G FAM194A Missense_Mutation p.E220Q 0.22 tolerated(0.07) benign(0.331) TCGA-DA-A1I7-06 3 150403780 150403780 C T FAM194A Silent p.S213S 0.19 TCGA-DA-A1I7-06 3 164733005 164733005 C T SI Missense_Mutation p.G1302E 0.22 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 3 164733006 164733006 C T SI Missense_Mutation p.G1302R 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I7-06 3 169099040 169099040 C T MECOM Missense_Mutation p.E104K 0.26 tolerated(0.08) probably_damaging(0.98) TCGA-DA-A1I7-06 3 179341806 179341806 C T NDUFB5 Missense_Mutation p.P183L 0.33 tolerated(0.27) probably_damaging(0.909) TCGA-DA-A1I7-06 3 194062895 194062895 G A CPN2 Silent p.N179N 0.23 TCGA-DA-A1I7-06 3 197348629 197348629 G A AC024560.3 RNA 0.15 TCGA-DA-A1I7-06 3 26751137 26751137 G A LRRC3B 5'UTR 0.29 TCGA-DA-A1I7-06 3 33065758 33065758 C T GLB1 Silent p.K376K 0.35 TCGA-DA-A1I7-06 3 36898686 36898686 G A TRANK1 Silent p.L799L 0.33 TCGA-DA-A1I7-06 3 37095311 37095311 G A LRRFIP2 3'UTR 0.31 TCGA-DA-A1I7-06 3 38753871 38753871 G A SCN10A Silent p.I1290I 0.24 TCGA-DA-A1I7-06 3 38770173 38770173 C T SCN10A Missense_Mutation p.D834N 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A1I7-06 3 38991652 38991652 C T SCN11A Missense_Mutation p.D68N 0.23 tolerated(0.18) benign(0.016) TCGA-DA-A1I7-06 3 44943043 44943043 C T TGM4 Missense_Mutation p.L229F 0.33 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I7-06 3 46307563 46307563 G A CCR3 Missense_Mutation p.G326E 0.24 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I7-06 3 47882444 47882444 C T DHX30 Silent p.S148S 0.26 TCGA-DA-A1I7-06 3 52524839 52524839 C T NISCH Silent p.F1244F 0.28 TCGA-DA-A1I7-06 3 52556577 52556577 G A STAB1 Missense_Mutation p.R2206Q 0.22 tolerated(0.26) benign(0.006) TCGA-DA-A1I7-06 3 53381598 53381598 G A DCP1A 5'UTR 0.35 TCGA-DA-A1I7-06 3 54919610 54919610 C T CACNA2D3 Nonsense_Mutation p.Q685* 0.38 TCGA-DA-A1I7-06 3 64536712 64536712 G A ADAMTS9 Silent p.S1575S 0.29 TCGA-DA-A1I7-06 3 89390106 89390106 G A EPHA3 Missense_Mutation p.M285I 0.19 tolerated(0.22) benign(0.001) TCGA-DA-A1I7-06 3 96706372 96706372 G A EPHA6 Missense_Mutation p.E217K 0.23 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I7-06 3 97888154 97888154 G A OR5H15 Missense_Mutation p.G204D 0.27 deleterious(0.01) possibly_damaging(0.739) TCGA-DA-A1I7-06 3 98002360 98002360 C T OR5H2 Missense_Mutation p.S210L 0.18 tolerated(0.31) benign(0.011) TCGA-DA-A1I7-06 4 100349080 100349080 G C ADH7 Missense_Mutation p.H158Q 0.14 deleterious(0.01) benign(0.001) TCGA-DA-A1I7-06 4 100756893 100756893 T C DAPP1 Missense_Mutation p.L72P 0.25 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I7-06 4 102783700 102783700 C T BANK1 Silent p.F214F 0.28 TCGA-DA-A1I7-06 4 106766630 106766630 C T GSTCD Nonsense_Mutation p.R600* 0.24 TCGA-DA-A1I7-06 4 114275856 114275856 C T ANK2 Missense_Mutation p.R2028W 0.25 probably_damaging(0.969) TCGA-DA-A1I7-06 4 115856431 115856431 T G NDST4 Silent p.P489P 0.16 TCGA-DA-A1I7-06 4 125631414 125631414 C T ANKRD50 Missense_Mutation p.A85T 0.21 tolerated(0.05) benign(0.395) TCGA-DA-A1I7-06 4 126336328 126336328 C T FAT4 Silent p.F2070F 0.39 TCGA-DA-A1I7-06 4 142641619 142641619 C T IL15 Intron 0.25 TCGA-DA-A1I7-06 4 15556783 15556783 A G CC2D2A Missense_Mutation p.K859E 0.19 deleterious(0) benign(0.09) TCGA-DA-A1I7-06 4 16504347 16504347 C T LDB2 Silent p.G347G 0.23 TCGA-DA-A1I7-06 4 189022313 189022313 C T TRIML2 Missense_Mutation p.R76K 0.60 tolerated(0.77) benign(0.003) TCGA-DA-A1I7-06 4 2307182 2307182 G A ZFYVE28 Silent p.P295P 0.17 TCGA-DA-A1I7-06 4 2307183 2307183 G A ZFYVE28 Missense_Mutation p.P295L 0.16 deleterious(0) possibly_damaging(0.786) TCGA-DA-A1I7-06 4 2701826 2701826 C T FAM193A Silent p.L1018L 0.43 TCGA-DA-A1I7-06 4 2746636 2746636 C T TNIP2 Missense_Mutation p.A232T 0.31 tolerated(0.06) benign(0.373) TCGA-DA-A1I7-06 4 54424138 54424138 G C LNX1 Intron 0.11 TCGA-DA-A1I7-06 4 5687164 5687164 G A EVC2 Missense_Mutation p.A250V 0.17 tolerated(0.08) benign(0.124) TCGA-DA-A1I7-06 4 69962567 69962567 C T UGT2B7 Missense_Mutation p.S110L 0.31 tolerated(0.73) benign(0.041) TCGA-DA-A1I7-06 4 73923756 73923756 A T COX18 3'UTR 0.48 TCGA-DA-A1I7-06 4 8229706 8229706 C T SH3TC1 Missense_Mutation p.P762L 0.21 deleterious(0.02) probably_damaging(1) TCGA-DA-A1I7-06 4 8582880 8582880 G A GPR78 Silent p.A57A 0.19 TCGA-DA-A1I7-06 4 8621144 8621144 G A CPZ Missense_Mutation p.G587R 0.24 tolerated(0.37) benign(0.002) TCGA-DA-A1I7-06 4 88583543 88583543 G A DMP1 Missense_Mutation p.G205R 0.16 tolerated(0.17) probably_damaging(1) TCGA-DA-A1I7-06 4 96137290 96137290 C T UNC5C Missense_Mutation p.R573K 0.21 tolerated(1) benign(0.023) TCGA-DA-A1I7-06 5 102361011 102361011 C T PAM Missense_Mutation p.R888W 0.69 tolerated(0.2) benign(0.021) TCGA-DA-A1I7-06 5 110092443 110092443 T A SLC25A46 Missense_Mutation p.L221Q 0.18 deleterious(0) probably_damaging(0.962) TCGA-DA-A1I7-06 5 1293435 1293435 C T TERT Silent p.R522R 0.18 TCGA-DA-A1I7-06 5 132535168 132535168 G A FSTL4 Silent p.I716I 0.57 TCGA-DA-A1I7-06 5 13714555 13714555 C T DNAH5 Missense_Mutation p.D4362N 0.39 possibly_damaging(0.822) TCGA-DA-A1I7-06 5 13823393 13823393 C T DNAH5 Silent p.L2222L 0.20 TCGA-DA-A1I7-06 5 140475705 140475705 C T PCDHB2 Missense_Mutation p.S444F 0.52 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DA-A1I7-06 5 140616448 140616448 C T PCDHB18 RNA 0.64 TCGA-DA-A1I7-06 5 143613 143613 C T PLEKHG4B Silent p.I246I 0.18 TCGA-DA-A1I7-06 5 150704867 150704867 G A SLC36A2 Silent p.S330S 0.64 TCGA-DA-A1I7-06 5 160039886 160039886 C T ATP10B Silent p.T900T 0.66 TCGA-DA-A1I7-06 5 161569245 161569245 C T GABRG2 Missense_Mutation p.P322L 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 5 167850762 167850762 C T WWC1 Missense_Mutation p.T500I 0.60 deleterious(0.02) probably_damaging(0.978) TCGA-DA-A1I7-06 5 167850763 167850763 C T WWC1 Silent p.T500T 0.60 TCGA-DA-A1I7-06 5 168119619 168119619 C T SLIT3 Missense_Mutation p.G1057R 0.56 deleterious(0.02) benign(0.2) TCGA-DA-A1I7-06 5 178358836 178358836 T C ZFP2 Silent p.T174T 0.61 TCGA-DA-A1I7-06 5 178408614 178408614 G A GRM6 3'UTR 0.50 TCGA-DA-A1I7-06 5 23527914 23527914 C T PRDM9 3'UTR 0.33 TCGA-DA-A1I7-06 5 35072715 35072715 C T PRLR Missense_Mutation p.E169K 0.20 deleterious(0.03) probably_damaging(0.955) TCGA-DA-A1I7-06 5 35991296 35991296 C T UGT3A1 Missense_Mutation p.G16E 0.33 tolerated(0.22) probably_damaging(0.92) TCGA-DA-A1I7-06 5 3599467 3599467 C T IRX1 Silent p.T135T 0.41 TCGA-DA-A1I7-06 5 36037996 36037996 G A UGT3A2 Nonsense_Mutation p.R400* 0.16 TCGA-DA-A1I7-06 5 38482087 38482087 C T LIFR Silent p.G968G 0.24 TCGA-DA-A1I7-06 5 39203057 39203057 C T FYB Silent p.A12A 0.28 TCGA-DA-A1I7-06 5 41019027 41019027 C T MROH2B Silent p.L845L 0.36 TCGA-DA-A1I7-06 5 467014 467014 C T EXOC3 3'UTR 0.75 TCGA-DA-A1I7-06 5 58289244 58289244 G A PDE4D Missense_Mutation p.R324W 0.58 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DA-A1I7-06 5 70805569 70805569 C T BDP1 Missense_Mutation p.P884S 0.46 tolerated(1) benign(0.005) TCGA-DA-A1I7-06 5 94842677 94842677 G A TTC37 Missense_Mutation p.T1018I 0.52 tolerated(0.13) benign(0.001) TCGA-DA-A1I7-06 5 94842678 94842678 T A TTC37 Missense_Mutation p.T1018S 0.52 tolerated(0.51) benign(0.001) TCGA-DA-A1I7-06 5 95242469 95242469 G A ELL2 Missense_Mutation p.R167W 0.53 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 6 100901681 100901681 G A SIM1 Missense_Mutation p.P72L 0.20 deleterious(0.03) benign(0.021) TCGA-DA-A1I7-06 6 105526589 105526589 G A LIN28B Silent p.T228T 0.25 TCGA-DA-A1I7-06 6 109225519 109225519 G A ARMC2 Missense_Mutation p.G312R 0.38 tolerated(1) benign(0) TCGA-DA-A1I7-06 6 116442962 116442962 C T COL10A1 Missense_Mutation p.G106E 0.18 deleterious(0) unknown(0) TCGA-DA-A1I7-06 6 117662729 117662729 C T ROS1 Missense_Mutation p.R1579K 0.32 tolerated(0.94) benign(0.002) TCGA-DA-A1I7-06 6 118886834 118886834 G A CEP85L Missense_Mutation p.S296F 0.33 deleterious(0) probably_damaging(0.989) TCGA-DA-A1I7-06 6 142409748 142409748 A T NMBR Missense_Mutation p.N16K 0.29 tolerated(0.26) benign(0.075) TCGA-DA-A1I7-06 6 142409749 142409749 T G NMBR Missense_Mutation p.N16T 0.29 tolerated(0.37) benign(0.002) TCGA-DA-A1I7-06 6 142758584 142758584 C T GPR126 Silent p.F1111F 0.24 TCGA-DA-A1I7-06 6 150386606 150386606 C T ULBP3 Missense_Mutation p.V186I 0.23 tolerated(0.66) benign(0.003) TCGA-DA-A1I7-06 6 152847286 152847286 C T SYNE1 Missense_Mutation p.D52N 0.32 possibly_damaging(0.771) TCGA-DA-A1I7-06 6 158505156 158505156 C T SYNJ2 Missense_Mutation p.P1053L 0.26 deleterious(0.05) benign(0.007) TCGA-DA-A1I7-06 6 160557602 160557602 C G SLC22A1 Silent p.T327T 0.24 TCGA-DA-A1I7-06 6 161470199 161470199 C T MAP3K4 Missense_Mutation p.L299F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1I7-06 6 1961041 1961041 C T GMDS Missense_Mutation p.E169K 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A1I7-06 6 24447166 24447166 C T GPLD1 Missense_Mutation p.E574K 0.45 deleterious(0.05) benign(0.011) TCGA-DA-A1I7-06 6 25799114 25799114 G A SLC17A1 Silent p.L435L 0.32 TCGA-DA-A1I7-06 6 28403789 28403789 C T ZSCAN23 Silent p.E85E 0.20 TCGA-DA-A1I7-06 6 36762372 36762372 G A CPNE5 Silent p.S153S 0.57 TCGA-DA-A1I7-06 6 36931063 36931063 C T PI16 Silent p.I315I 0.30 TCGA-DA-A1I7-06 6 37420894 37420894 C T CMTR1 Silent p.I227I 0.46 TCGA-DA-A1I7-06 6 38835886 38835886 C T DNAH8 Missense_Mutation p.L2031F 0.41 probably_damaging(0.998) TCGA-DA-A1I7-06 6 39602662 39602662 C T KIF6 Missense_Mutation p.D158N 0.35 tolerated(0.13) possibly_damaging(0.791) TCGA-DA-A1I7-06 6 46874483 46874483 C T GPR116 Missense_Mutation p.R6K 0.48 tolerated(0.46) benign(0.004) TCGA-DA-A1I7-06 6 47754302 47754302 G A OPN5 Missense_Mutation p.R61Q 0.37 tolerated(0.08) possibly_damaging(0.545) TCGA-DA-A1I7-06 6 5431306 5431306 C T FARS2 Missense_Mutation p.P269S 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 6 55266690 55266690 C T GFRAL 3'UTR 0.54 TCGA-DA-A1I7-06 6 56044434 56044434 C T COL21A1 Silent p.V194V 0.21 TCGA-DA-A1I7-06 6 70847578 70847578 G A COL19A1 Missense_Mutation p.G462D 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A1I7-06 6 73879567 73879567 C T KCNQ5 Nonsense_Mutation p.R542* 0.27 TCGA-DA-A1I7-06 6 74351495 74351495 G A SLC17A5 Silent p.V148V 0.33 TCGA-DA-A1I7-06 6 76023520 76023520 G A FILIP1 Silent p.F676F 0.34 TCGA-DA-A1I7-06 6 81053415 81053415 C T BCKDHB Missense_Mutation p.S358L 0.24 tolerated(0.17) benign(0.012) TCGA-DA-A1I7-06 7 100334192 100334192 C T ZAN Nonsense_Mutation p.R65* 0.44 TCGA-DA-A1I7-06 7 108205132 108205132 G A THAP5 Missense_Mutation p.H231Y 0.41 tolerated(0.58) probably_damaging(0.994) TCGA-DA-A1I7-06 7 111368493 111368493 G A DOCK4 Missense_Mutation p.P1913L 0.47 deleterious_low_confidence(0) benign(0.039) TCGA-DA-A1I7-06 7 113558909 113558909 G A PPP1R3A Missense_Mutation p.S48F 0.43 deleterious(0) probably_damaging(0.928) TCGA-DA-A1I7-06 7 129125763 129125763 C T STRIP2 3'UTR 0.45 TCGA-DA-A1I7-06 7 138333801 138333801 G A SVOPL Missense_Mutation p.R206C 0.30 tolerated(0.07) benign(0.12) TCGA-DA-A1I7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.58 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I7-06 7 142480020 142480020 C T PRSS3P2 RNA 0.16 TCGA-DA-A1I7-06 7 142566054 142566054 C T EPHB6 Silent p.I658I 0.29 TCGA-DA-A1I7-06 7 142569553 142569553 C T TRPV6 Nonsense_Mutation p.W695* 0.42 TCGA-DA-A1I7-06 7 144364830 144364830 G A TPK1 Intron 0.30 TCGA-DA-A1I7-06 7 150217156 150217156 G A GIMAP7 Missense_Mutation p.E32K 0.44 tolerated(1) benign(0.004) TCGA-DA-A1I7-06 7 150647470 150647470 G T KCNH2 Silent p.I728I 0.25 TCGA-DA-A1I7-06 7 150649877 150649877 C T KCNH2 Nonsense_Mutation p.W398* 0.40 TCGA-DA-A1I7-06 7 20782554 20782554 C T ABCB5 Missense_Mutation p.R1027C 0.29 deleterious(0) probably_damaging(0.987) TCGA-DA-A1I7-06 7 2473051 2473051 C T CHST12 Silent p.F259F 0.42 TCGA-DA-A1I7-06 7 28609991 28609991 G A CREB5 Silent p.S100S 0.37 TCGA-DA-A1I7-06 7 30880418 30880418 C T FAM188B Silent p.L467L 0.18 TCGA-DA-A1I7-06 7 31011632 31011632 C T GHRHR Silent p.I173I 0.45 TCGA-DA-A1I7-06 7 4152923 4152923 T A SDK1 Missense_Mutation p.F1146Y 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1I7-06 7 44805846 44805846 C T ZMIZ2 Missense_Mutation p.P776S 0.36 tolerated(0.35) benign(0.002) TCGA-DA-A1I7-06 7 4899799 4899799 A T PAPOLB Nonsense_Mutation p.L547* 0.42 TCGA-DA-A1I7-06 7 4917240 4917240 C T RADIL Silent p.T177T 0.20 TCGA-DA-A1I7-06 7 55214303 55214303 C T EGFR Silent p.I143I 0.10 TCGA-DA-A1I7-06 7 63726529 63726529 G A ZNF679 Missense_Mutation p.R173K 0.45 tolerated(0.24) benign(0.011) TCGA-DA-A1I7-06 7 82581603 82581603 G A PCLO Missense_Mutation p.S2889F 0.30 unknown(0) TCGA-DA-A1I7-06 7 86394591 86394591 C T GRM3 Silent p.L44L 0.30 TCGA-DA-A1I7-06 7 86415831 86415831 C T GRM3 Silent p.I241I 0.47 TCGA-DA-A1I7-06 7 92764132 92764132 C T SAMD9L Missense_Mutation p.G385R 0.26 tolerated(0.71) benign(0.001) TCGA-DA-A1I7-06 7 98445738 98445738 G A TMEM130 Missense_Mutation p.R417C 0.25 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I7-06 7 98601834 98601834 G C TRRAP Missense_Mutation p.G3430A 0.08 possibly_damaging(0.873) TCGA-DA-A1I7-06 7 99091810 99091810 G A ZNF394 Missense_Mutation p.S343F 0.47 deleterious(0.02) benign(0.374) TCGA-DA-A1I7-06 7 99490188 99490188 G A TRIM4 Silent p.P367P 0.24 TCGA-DA-A1I7-06 8 10469143 10469143 C T RP1L1 Missense_Mutation p.R822Q 0.39 benign(0.008) TCGA-DA-A1I7-06 8 104778587 104778587 G A RIMS2 Missense_Mutation p.E174K 0.11 tolerated_low_confidence(0.13) benign(0.053) TCGA-DA-A1I7-06 8 105263362 105263362 G A RIMS2 Missense_Mutation p.E1268K 0.42 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DA-A1I7-06 8 106815088 106815088 C T ZFPM2 Silent p.S926S 0.27 TCGA-DA-A1I7-06 8 107751735 107751735 C T OXR1 Missense_Mutation p.A697V 0.36 tolerated(0.16) benign(0.206) TCGA-DA-A1I7-06 8 110457651 110457651 C T PKHD1L1 Silent p.I1851I 0.27 TCGA-DA-A1I7-06 8 110497338 110497338 C T PKHD1L1 Silent p.I3214I 0.44 TCGA-DA-A1I7-06 8 110984881 110984881 G A KCNV1 Silent p.I199I 0.22 TCGA-DA-A1I7-06 8 118831999 118831999 G A EXT1 Silent p.I484I 0.51 TCGA-DA-A1I7-06 8 134144179 134144179 C T TG Silent p.F2662F 0.24 TCGA-DA-A1I7-06 8 134239797 134239797 G A WISP1 Silent p.K316K 0.40 TCGA-DA-A1I7-06 8 139833411 139833411 C T COL22A1 Missense_Mutation p.G405S 0.27 unknown(0) TCGA-DA-A1I7-06 8 143927990 143927990 G A GML Missense_Mutation p.D121N 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A1I7-06 8 144997805 144997805 C A PLEC Missense_Mutation p.V2235L 0.23 unknown(0) TCGA-DA-A1I7-06 8 16007812 16007812 C T MSR1 Missense_Mutation p.G303S 0.15 deleterious(0.02) possibly_damaging(0.887) TCGA-DA-A1I7-06 8 26365944 26365944 G A PNMA2 Silent p.L110L 0.15 TCGA-DA-A1I7-06 8 2823369 2823369 C T CSMD1 Missense_Mutation p.E3070K 0.37 possibly_damaging(0.72) TCGA-DA-A1I7-06 8 32585487 32585487 G A NRG1 Missense_Mutation p.G175R 0.44 deleterious(0.02) probably_damaging(0.965) TCGA-DA-A1I7-06 8 72127949 72127949 C G EYA1 Missense_Mutation p.A459P 0.21 tolerated(0.57) benign(0.001) TCGA-DA-A1I7-06 8 77768012 77768012 G A ZFHX4 Missense_Mutation p.R2952Q 0.15 probably_damaging(0.975) TCGA-DA-A1I7-06 8 80677926 80677927 - GTT HEY1 In_Frame_Ins p.Y141_L142insN 0.14 TCGA-DA-A1I7-06 9 104340091 104340091 C T GRIN3A Silent p.E989E 0.66 TCGA-DA-A1I7-06 9 104448967 104448967 C T GRIN3A Missense_Mutation p.M405I 0.71 tolerated(0.35) benign(0.002) TCGA-DA-A1I7-06 9 105767007 105767007 C T CYLC2 Missense_Mutation p.R71C 0.59 deleterious(0.03) probably_damaging(0.977) TCGA-DA-A1I7-06 9 108151516 108151516 C T SLC44A1 3'UTR 0.70 TCGA-DA-A1I7-06 9 111936842 111936842 C T EPB41L4B Missense_Mutation p.E899K 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DA-A1I7-06 9 120476725 120476725 G A TLR4 Silent p.K773K 0.16 TCGA-DA-A1I7-06 9 121976304 121976304 T A BRINP1 Missense_Mutation p.E272V 0.11 tolerated(0.21) benign(0.052) TCGA-DA-A1I7-06 9 123675942 123675942 C T TRAF1 Missense_Mutation p.M123I 0.44 tolerated(1) benign(0) TCGA-DA-A1I7-06 9 124929181 124929181 G A MORN5 Missense_Mutation p.G61E 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 9 124936831 124936831 G A MORN5 Missense_Mutation p.D122N 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A1I7-06 9 126125453 126125453 C T CRB2 Missense_Mutation p.P135L 0.21 tolerated(0.36) unknown(0) TCGA-DA-A1I7-06 9 130587562 130587562 C T ENG Missense_Mutation p.G255D 0.52 deleterious(0) probably_damaging(0.938) TCGA-DA-A1I7-06 9 138676458 138676458 C T KCNT1 Silent p.L1007L 0.65 TCGA-DA-A1I7-06 9 139754341 139754341 A C MAMDC4 Missense_Mutation p.N1066T 0.20 deleterious(0.01) benign(0.008) TCGA-DA-A1I7-06 9 139903069 139903069 G A ABCA2 Silent p.F2358F 0.65 TCGA-DA-A1I7-06 9 18928465 18928465 G A FAM154A Missense_Mutation p.S337F 0.57 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I7-06 9 20990133 20990133 C T FOCAD Silent p.F1672F 0.65 TCGA-DA-A1I7-06 9 35095429 35095429 G A PIGO Missense_Mutation p.P45L 0.79 tolerated(0.42) benign(0.05) TCGA-DA-A1I7-06 9 74865794 74865794 C T GDA 3'Flank 0.73 TCGA-DA-A1I7-06 9 90499972 90499972 C T SPATA31E1 Silent p.S190S 0.54 TCGA-DA-A1I7-06 X 105153188 105153188 G A NRK Missense_Mutation p.E520K 0.75 deleterious(0) probably_damaging(0.921) TCGA-DA-A1I7-06 X 106312573 106312573 G A RBM41 Silent p.F329F 0.66 TCGA-DA-A1I7-06 X 107829912 107829912 C T COL4A5 Missense_Mutation p.P367L 0.60 unknown(0) TCGA-DA-A1I7-06 X 122613938 122613938 G A GRIA3 Intron 0.65 TCGA-DA-A1I7-06 X 1407513 1407513 G A CSF2RA Silent p.Q107Q 0.50 TCGA-DA-A1I7-06 X 140995196 140995196 G A MAGEC1 Missense_Mutation p.G669E 0.76 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DA-A1I7-06 X 154157677 154157677 G A F8 Missense_Mutation p.S1463F 0.84 deleterious(0) possibly_damaging(0.563) TCGA-DA-A1I7-06 X 18958111 18958111 A G PHKA2 Splice_Site p.X306_splice 0.70 TCGA-DA-A1I7-06 X 2139018 2139018 G A DHRSX 3'UTR 0.62 TCGA-DA-A1I7-06 X 21613508 21613508 G A CNKSR2 Missense_Mutation p.M657I 0.74 deleterious(0) benign(0.347) TCGA-DA-A1I7-06 X 26157408 26157408 G A MAGEB18 Nonsense_Mutation p.W102* 0.69 TCGA-DA-A1I7-06 X 54263502 54263502 G A WNK3 Silent p.H1499H 0.73 TCGA-DA-A1I7-06 X 54263821 54263821 G A WNK3 Missense_Mutation p.S1393L 0.87 tolerated(0.37) benign(0.003) TCGA-DA-A1I7-06 X 75648631 75648631 C T MAGEE1 Missense_Mutation p.S103F 1.00 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-DA-A1I7-06 X 75648632 75648632 C T MAGEE1 Silent p.S103S 0.92 TCGA-DA-A1I8-06 10 114164518 114164518 C T ACSL5 Missense_Mutation p.S185L 0.66 deleterious(0) benign(0.098) TCGA-DA-A1I8-06 10 124697643 124697643 C G C10orf88 Silent p.S227S 0.53 TCGA-DA-A1I8-06 10 13224936 13224936 A G MCM10 Missense_Mutation p.K313E 0.68 deleterious(0) benign(0.367) TCGA-DA-A1I8-06 10 135095737 135095737 A C TUBGCP2 Missense_Mutation p.L828R 0.50 tolerated(0.31) benign(0.005) TCGA-DA-A1I8-06 10 48388676 48388676 G A RBP3 Silent p.F734F 0.67 TCGA-DA-A1I8-06 10 48414162 48414162 C T GDF2 Missense_Mutation p.G236S 0.55 tolerated(0.17) benign(0.39) TCGA-DA-A1I8-06 10 55570395 55570395 C T PCDH15 Missense_Mutation p.R1475H 0.57 possibly_damaging(0.469) TCGA-DA-A1I8-06 10 70928257 70928257 C T VPS26A Missense_Mutation p.P247L 0.44 deleterious(0) probably_damaging(0.991) TCGA-DA-A1I8-06 10 87487638 87487638 C T GRID1 Missense_Mutation p.G503R 0.67 deleterious(0) probably_damaging(1) TCGA-DA-A1I8-06 10 93851681 93851681 G A CPEB3 Silent p.N531N 0.64 TCGA-DA-A1I8-06 11 108059962 108059962 G A NPAT Missense_Mutation p.L143F 0.50 tolerated(0.69) benign(0.397) TCGA-DA-A1I8-06 11 123676126 123676126 C T OR6M1 Missense_Mutation p.R311K 0.13 tolerated(0.46) benign(0.003) TCGA-DA-A1I8-06 11 1271266 1271266 C T MUC5B Missense_Mutation p.P4386S 0.24 benign(0) TCGA-DA-A1I8-06 11 132812919 132812919 G A OPCML Silent p.F23F 0.25 TCGA-DA-A1I8-06 11 40136259 40136259 G A LRRC4C Silent p.I528I 0.55 TCGA-DA-A1I8-06 11 47843330 47843330 G A NUP160 Missense_Mutation p.A408V 0.15 deleterious(0.02) benign(0.108) TCGA-DA-A1I8-06 11 4968129 4968129 A G OR51A4 Silent p.L68L 0.49 TCGA-DA-A1I8-06 11 51516171 51516171 G A OR4C46 Missense_Mutation p.R297K 0.22 tolerated_low_confidence(0.51) benign(0.003) TCGA-DA-A1I8-06 11 5602813 5602813 C T OR52B6 Missense_Mutation p.S236F 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I8-06 11 5758272 5758272 G A OR56B1 Missense_Mutation p.D176N 0.20 tolerated(0.41) benign(0.002) TCGA-DA-A1I8-06 11 64037607 64037607 G A BAD 3'UTR 0.59 TCGA-DA-A1I8-06 11 64037608 64037608 T C BAD 3'UTR 0.59 TCGA-DA-A1I8-06 11 70208222 70208222 C T PPFIA1 Silent p.A868A 0.18 TCGA-DA-A1I8-06 11 71152330 71152330 G A DHCR7 Missense_Mutation p.A190V 0.23 tolerated(0.52) benign(0.018) TCGA-DA-A1I8-06 11 71277230 71277230 G T KRTAP5-10 Missense_Mutation p.Q199H 0.62 unknown(0) TCGA-DA-A1I8-06 11 77409717 77409717 G A RSF1 Nonsense_Mutation p.R844* 0.21 TCGA-DA-A1I8-06 11 89537605 89537605 C T TRIM49 Silent p.G11G 0.56 TCGA-DA-A1I8-06 11 9199768 9199768 G A DENND5A Missense_Mutation p.S606F 0.18 deleterious(0.02) benign(0.115) TCGA-DA-A1I8-06 12 101480466 101480466 G A ANO4 Missense_Mutation p.G487E 0.33 deleterious(0) probably_damaging(0.913) TCGA-DA-A1I8-06 12 109181953 109181953 G A SSH1 Silent p.F987F 0.49 TCGA-DA-A1I8-06 12 111785777 111785777 G A CUX2 Missense_Mutation p.G1370E 0.55 tolerated_low_confidence(0.41) benign(0.003) TCGA-DA-A1I8-06 12 124870393 124870393 C T NCOR2 Silent p.R639R 0.29 TCGA-DA-A1I8-06 12 14796584 14796584 G A GUCY2C Silent p.T618T 0.46 TCGA-DA-A1I8-06 12 46623403 46623403 C T SLC38A1 Missense_Mutation p.E48K 0.44 deleterious(0.02) probably_damaging(0.971) TCGA-DA-A1I8-06 12 51447632 51447632 C T LETMD1 Silent p.V167V 0.25 TCGA-DA-A1I8-06 12 51488947 51488947 C T TFCP2 3'UTR 0.23 TCGA-DA-A1I8-06 12 52159697 52159697 C G SCN8A Silent p.V929V 0.34 TCGA-DA-A1I8-06 12 53237949 53237949 C T KRT78 Silent p.T325T 0.33 TCGA-DA-A1I8-06 12 53344588 53344588 C T KRT18 Silent p.L185L 0.45 TCGA-DA-A1I8-06 12 54117527 54117527 G A CALCOCO1 Silent p.F100F 0.44 TCGA-DA-A1I8-06 12 70949899 70949899 G A PTPRB Missense_Mutation p.R1582W 0.46 deleterious(0) probably_damaging(0.993) TCGA-DA-A1I8-06 12 70949900 70949900 G A PTPRB Silent p.C1581C 0.45 TCGA-DA-A1I8-06 13 103718657 103718657 G T SLC10A2 5'UTR 0.19 TCGA-DA-A1I8-06 13 29599853 29599853 C T MTUS2 Silent p.L350L 0.38 TCGA-DA-A1I8-06 13 33638149 33638149 C T KL Silent p.G955G 0.35 TCGA-DA-A1I8-06 14 20711325 20711325 G A OR11H4 Silent p.L125L 0.40 TCGA-DA-A1I8-06 14 22471408 22471408 G A TRAV18 5'UTR 0.34 TCGA-DA-A1I8-06 14 55168907 55168907 C T SAMD4A Silent p.I108I 0.37 TCGA-DA-A1I8-06 14 64892780 64892780 A G MTHFD1 Missense_Mutation p.K333E 0.39 tolerated(0.99) benign(0.001) TCGA-DA-A1I8-06 14 70713650 70713650 T G ADAM21P1 RNA 0.35 TCGA-DA-A1I8-06 14 71134317 71134317 G A TTC9 Missense_Mutation p.R148Q 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1I8-06 15 29346463 29346463 G T APBA2 Missense_Mutation p.A126S 0.19 tolerated_low_confidence(0.84) benign(0.027) TCGA-DA-A1I8-06 15 42028814 42028814 C T MGA Missense_Mutation p.P1451L 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I8-06 15 50931720 50931720 G A TRPM7 Silent p.A187A 0.35 TCGA-DA-A1I8-06 15 75632106 75632106 C T COMMD4 Missense_Mutation p.S149F 0.44 deleterious(0.04) benign(0.01) TCGA-DA-A1I8-06 15 83346062 83346062 G A AP3B2 Silent p.I484I 0.12 TCGA-DA-A1I8-06 16 1370212 1370212 C T UBE2I Silent p.Y87Y 0.22 TCGA-DA-A1I8-06 16 1370213 1370213 C T UBE2I Missense_Mutation p.P88S 0.22 tolerated(0.06) benign(0.111) TCGA-DA-A1I8-06 16 29708339 29708339 C G QPRT Missense_Mutation p.A191G 0.39 deleterious(0.04) benign(0.011) TCGA-DA-A1I8-06 16 46615932 46615933 CT - SHCBP1 Frame_Shift_Del p.E576Afs*5 0.08 TCGA-DA-A1I8-06 16 58073843 58073843 C T MMP15 Missense_Mutation p.R169C 0.62 deleterious(0.02) possibly_damaging(0.8) TCGA-DA-A1I8-06 16 66949202 66949202 C T CDH16 Silent p.L168L 0.23 TCGA-DA-A1I8-06 16 69354183 69354183 C T VPS4A Nonsense_Mutation p.Q254* 0.26 TCGA-DA-A1I8-06 16 70064957 70064957 G A MIR1972-2 3'Flank 0.45 TCGA-DA-A1I8-06 16 70064958 70064958 G A MIR1972-2 3'Flank 0.45 TCGA-DA-A1I8-06 16 9856929 9856929 G A GRIN2A 3'UTR 0.50 TCGA-DA-A1I8-06 17 10304076 10304076 C T MYH8 Silent p.G1122G 0.37 TCGA-DA-A1I8-06 17 11648187 11648187 C T DNAH9 Missense_Mutation p.P2062L 0.44 possibly_damaging(0.844) TCGA-DA-A1I8-06 17 18058014 18058014 C T MYO15A Silent p.S2723S 0.40 TCGA-DA-A1I8-06 17 2966538 2966538 G A OR1D5 Missense_Mutation p.R122C 0.35 deleterious(0.01) benign(0.178) TCGA-DA-A1I8-06 17 3144090 3144090 G A OR1D4 RNA 0.29 TCGA-DA-A1I8-06 17 35743032 35743032 G A C17orf78 Silent p.G159G 0.28 TCGA-DA-A1I8-06 17 36991564 36991564 A G C17orf98 Missense_Mutation p.Y115H 0.39 deleterious(0) probably_damaging(0.921) TCGA-DA-A1I8-06 17 37563941 37563941 A G MED1 Silent p.D1511D 0.30 TCGA-DA-A1I8-06 17 39551240 39551240 G A KRT31 Silent p.T319T 0.38 TCGA-DA-A1I8-06 17 39551241 39551241 G A KRT31 Missense_Mutation p.T319I 0.37 tolerated(0.06) benign(0.014) TCGA-DA-A1I8-06 17 39635641 39635641 G A KRT35 Silent p.S223S 0.37 TCGA-DA-A1I8-06 17 42964082 42964082 G A EFTUD2 Missense_Mutation p.H48Y 0.39 tolerated(0.13) benign(0.007) TCGA-DA-A1I8-06 17 57270947 57270947 C T PRR11 Missense_Mutation p.P166L 0.40 tolerated(0.25) benign(0.009) TCGA-DA-A1I8-06 17 60757548 60757548 C T MRC2 Silent p.F772F 0.51 TCGA-DA-A1I8-06 17 71415334 71415334 C T SDK2 Silent p.Q719Q 0.72 TCGA-DA-A1I8-06 17 7245641 7245641 C T ACAP1 Silent p.S93S 0.35 TCGA-DA-A1I8-06 17 7245642 7245642 C T ACAP1 Missense_Mutation p.H94Y 0.37 deleterious(0) benign(0.39) TCGA-DA-A1I8-06 17 72888728 72888728 C T FADS6 Silent p.K93K 0.29 TCGA-DA-A1I8-06 17 74473796 74473796 G A RHBDF2 Silent p.F277F 0.42 TCGA-DA-A1I8-06 17 74944062 74944062 T C MGAT5B Missense_Mutation p.W701R 0.32 tolerated(0.49) probably_damaging(0.921) TCGA-DA-A1I8-06 17 80282647 80282647 C T SECTM1 Missense_Mutation p.G72R 0.47 tolerated(0.45) benign(0.013) TCGA-DA-A1I8-06 17 80377712 80377712 C T HEXDC Missense_Mutation p.H13Y 0.59 deleterious(0.01) probably_damaging(0.988) TCGA-DA-A1I8-06 18 19997484 19997484 C T CTAGE1 Silent p.L97L 0.40 TCGA-DA-A1I8-06 18 21141326 21141326 G A NPC1 Missense_Mutation p.S210L 0.37 deleterious(0.01) possibly_damaging(0.833) TCGA-DA-A1I8-06 18 51820122 51820122 C T POLI Missense_Mutation p.P503L 0.27 tolerated(0.17) benign(0.005) TCGA-DA-A1I8-06 18 59483490 59483490 G A RNF152 Silent p.L69L 0.36 TCGA-DA-A1I8-06 19 20135111 20135111 C T ZNF682 Silent p.Q26Q 0.81 TCGA-DA-A1I8-06 19 33703818 33703818 G A SLC7A10 Silent p.P149P 0.79 TCGA-DA-A1I8-06 19 38973691 38973691 C T RYR1 Missense_Mutation p.P1549S 0.75 probably_damaging(1) TCGA-DA-A1I8-06 19 46393972 46393972 G T MYPOP Missense_Mutation p.P370Q 0.33 tolerated_low_confidence(0.25) benign(0.001) TCGA-DA-A1I8-06 19 54866989 54866989 T C LAIR1 Missense_Mutation p.Y251C 0.80 deleterious(0) probably_damaging(0.984) TCGA-DA-A1I8-06 19 55290103 55290103 G A KIR2DL1 Missense_Mutation p.S235N 0.60 tolerated(0.22) probably_damaging(0.985) TCGA-DA-A1I8-06 19 691996 691996 G A PRSS57 Silent p.L81L 0.70 TCGA-DA-A1I8-06 1 109824519 109824519 C T PSRC1 Missense_Mutation p.A81T 0.17 deleterious(0) probably_damaging(0.999) TCGA-DA-A1I8-06 1 109824520 109824520 C T PSRC1 Silent p.E80E 0.16 TCGA-DA-A1I8-06 1 12183362 12183362 C T TNFRSF8 Missense_Mutation p.T323I 0.45 deleterious(0.02) possibly_damaging(0.469) TCGA-DA-A1I8-06 1 158687446 158687446 G A OR6K3 Missense_Mutation p.L154F 0.78 tolerated(0.06) benign(0.232) TCGA-DA-A1I8-06 1 17727845 17727845 T G PADI6 RNA 0.20 TCGA-DA-A1I8-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.34 deleterious(0) possibly_damaging(0.871) TCGA-DA-A1I8-06 1 196694339 196694339 C T CFH Silent p.F595F 0.75 TCGA-DA-A1I8-06 1 206770466 206770466 C T EIF2D Missense_Mutation p.D458N 0.65 deleterious(0) benign(0.228) TCGA-DA-A1I8-06 1 206770467 206770467 C T EIF2D Nonsense_Mutation p.W457* 0.69 TCGA-DA-A1I8-06 1 20990998 20990998 G A KIF17 3'UTR 0.46 TCGA-DA-A1I8-06 1 27121193 27121193 C T PIGV Missense_Mutation p.S223F 0.52 tolerated(0.7) benign(0.008) TCGA-DA-A1I8-06 1 29314233 29314233 C T EPB41 Missense_Mutation p.S95F 0.51 deleterious(0) benign(0.117) TCGA-DA-A1I8-06 1 33736096 33736096 G T ZNF362 5'UTR 0.33 TCGA-DA-A1I8-06 1 39879438 39879438 G A KIAA0754 Silent p.E1031E 0.16 TCGA-DA-A1I8-06 1 40702018 40702018 G A RLF Silent p.Q548Q 0.43 TCGA-DA-A1I8-06 1 62350026 62350026 C T INADL Missense_Mutation p.S1026F 0.44 tolerated(0.08) benign(0.197) TCGA-DA-A1I8-06 1 71439984 71439984 C T PTGER3 Intron 0.12 TCGA-DA-A1I8-06 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.53 TCGA-DA-A1I8-06 1 75171909 75171909 G A CRYZ 3'UTR 0.33 TCGA-DA-A1I8-06 20 15967391 15967391 G A MACROD2 Silent p.T335T 0.48 TCGA-DA-A1I8-06 20 21335488 21335488 C T XRN2 Silent p.Y666Y 0.25 TCGA-DA-A1I8-06 20 33328797 33328797 G A NCOA6 Missense_Mutation p.P1755S 0.38 benign(0.008) TCGA-DA-A1I8-06 20 34091962 34091962 G A CEP250 Missense_Mutation p.R1922K 0.27 benign(0.024) TCGA-DA-A1I8-06 20 3540071 3540071 C T ATRN Silent p.L382L 0.31 TCGA-DA-A1I8-06 20 3540072 3540072 T C ATRN Missense_Mutation p.L382P 0.30 tolerated(0.27) possibly_damaging(0.542) TCGA-DA-A1I8-06 20 45130734 45130734 A G ZNF334 Missense_Mutation p.F415S 0.34 tolerated(0.23) benign(0.137) TCGA-DA-A1I8-06 20 47881379 47881379 G A ZNFX1 Silent p.T675T 0.54 TCGA-DA-A1I8-06 20 52198662 52198662 C A ZNF217 Missense_Mutation p.R235L 0.47 deleterious(0.01) possibly_damaging(0.458) TCGA-DA-A1I8-06 20 5897512 5897512 C T CHGB Missense_Mutation p.S46L 0.49 tolerated(0.07) benign(0.14) TCGA-DA-A1I8-06 20 5903556 5903556 C T CHGB Nonsense_Mutation p.Q256* 0.53 TCGA-DA-A1I8-06 20 61542877 61542877 G A DIDO1 Nonsense_Mutation p.R30* 0.63 TCGA-DA-A1I8-06 20 62065237 62065237 G A KCNQ2 Missense_Mutation p.A348V 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A1I8-06 21 10862643 10862643 C T IGHV1OR21-1 Silent p.L8L 0.09 TCGA-DA-A1I8-06 21 35468240 35468240 T C SLC5A3 Missense_Mutation p.L248P 0.48 deleterious(0) probably_damaging(0.961) TCGA-DA-A1I8-06 21 40191596 40191596 A G ETS2 Silent p.P327P 0.35 TCGA-DA-A1I8-06 21 42080415 42080415 C T DSCAM Missense_Mutation p.G109E 0.22 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I8-06 22 18028750 18028750 C T CECR2 Missense_Mutation p.S1237F 0.58 deleterious(0) possibly_damaging(0.82) TCGA-DA-A1I8-06 22 22697959 22697959 C T IGLV9-49 Missense_Mutation p.P83S 0.17 tolerated(0.06) benign(0.003) TCGA-DA-A1I8-06 22 39411753 39411753 C T APOBEC3C Silent p.N57N 0.66 TCGA-DA-A1I8-06 2 103274316 103274316 G A SLC9A2 Missense_Mutation p.E195K 0.48 tolerated(0.45) possibly_damaging(0.558) TCGA-DA-A1I8-06 2 10559988 10559988 C T HPCAL1 Silent p.L35L 0.26 TCGA-DA-A1I8-06 2 130832617 130832617 G A POTEF Silent p.L810L 0.24 TCGA-DA-A1I8-06 2 152500514 152500514 C T NEB Missense_Mutation p.D2592N 0.27 probably_damaging(0.987) TCGA-DA-A1I8-06 2 152521954 152521954 G A NEB Missense_Mutation p.L1711F 0.28 possibly_damaging(0.844) TCGA-DA-A1I8-06 2 179185044 179185044 G A OSBPL6 Intron 0.42 TCGA-DA-A1I8-06 2 179392293 179392293 G A TTN Nonsense_Mutation p.Q35854* 0.15 TCGA-DA-A1I8-06 2 179398792 179398792 C T TTN Missense_Mutation p.E34184K 0.38 TCGA-DA-A1I8-06 2 179402438 179402438 C T TTN Missense_Mutation p.E33166K 0.23 TCGA-DA-A1I8-06 2 179610452 179610452 A G TTN Intron 0.25 TCGA-DA-A1I8-06 2 202065228 202065228 C T CASP10 Intron 0.25 TCGA-DA-A1I8-06 2 220349085 220349085 C T SPEG Silent p.P2300P 0.46 TCGA-DA-A1I8-06 2 232578092 232578092 T G PTMA 3'UTR 0.39 TCGA-DA-A1I8-06 2 233785073 233785073 T C NGEF Missense_Mutation p.N250S 0.31 tolerated(0.82) benign(0.197) TCGA-DA-A1I8-06 2 240033331 240033331 G A HDAC4 Silent p.P618P 0.56 TCGA-DA-A1I8-06 2 242077391 242077391 G A PASK Missense_Mutation p.P285S 0.42 tolerated(0.09) benign(0.409) TCGA-DA-A1I8-06 2 27375716 27375716 C T TCF23 Missense_Mutation p.P209L 0.46 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-DA-A1I8-06 2 28804976 28804976 G A PLB1 Silent p.K536K 0.43 TCGA-DA-A1I8-06 2 29386787 29386787 A G CLIP4 Missense_Mutation p.Y542C 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A1I8-06 2 39507459 39507459 G A MAP4K3 Silent p.P556P 0.52 TCGA-DA-A1I8-06 2 74782574 74782574 C T DOK1 Silent p.A118A 0.52 TCGA-DA-A1I8-06 3 119256003 119256003 C G CD80 Missense_Mutation p.Q227H 0.61 deleterious(0.04) probably_damaging(0.981) TCGA-DA-A1I8-06 3 119256060 119256060 C G CD80 Missense_Mutation p.M208I 0.65 tolerated(0.36) benign(0.052) TCGA-DA-A1I8-06 3 119256110 119256110 C A CD80 Missense_Mutation p.D192Y 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A1I8-06 3 126734143 126734143 C T PLXNA1 Silent p.G998G 0.13 TCGA-DA-A1I8-06 3 158983180 158983180 C T IQCJ Silent p.L156L 0.59 TCGA-DA-A1I8-06 3 167249024 167249024 G A WDR49 Silent p.P347P 0.21 TCGA-DA-A1I8-06 3 17052710 17052710 C T PLCL2 Silent p.I498I 0.18 TCGA-DA-A1I8-06 3 187416342 187416342 G A RTP2 Missense_Mutation p.L208F 0.58 deleterious(0.02) benign(0.342) TCGA-DA-A1I8-06 3 188426232 188426232 C T LPP Intron 0.18 TCGA-DA-A1I8-06 3 45872564 45872564 C G LZTFL1 Splice_Site p.X174_splice 0.41 TCGA-DA-A1I8-06 3 56627732 56627732 A C CCDC66 Missense_Mutation p.I428L 0.72 tolerated(0.15) benign(0.002) TCGA-DA-A1I8-06 3 62253112 62253112 C T PTPRG Missense_Mutation p.P895L 0.08 tolerated(0.17) possibly_damaging(0.661) TCGA-DA-A1I8-06 3 8607123 8607123 C T LMCD1 Silent p.C243C 0.15 TCGA-DA-A1I8-06 3 9517239 9517239 C A SETD5 Missense_Mutation p.H1265N 0.11 tolerated(0.31) benign(0.046) TCGA-DA-A1I8-06 3 97356761 97356761 C T EPHA6 Silent p.L873L 0.13 TCGA-DA-A1I8-06 4 113332976 113332976 C T ALPK1 Intron 0.33 TCGA-DA-A1I8-06 4 162841804 162841804 C T FSTL5 Missense_Mutation p.G54E 0.36 tolerated_low_confidence(0.24) benign(0.007) TCGA-DA-A1I8-06 4 177067188 177067188 T A WDR17 Silent p.V548V 0.45 TCGA-DA-A1I8-06 4 183696119 183696119 T C TENM3 Missense_Mutation p.I1706T 0.38 tolerated(0.12) possibly_damaging(0.507) TCGA-DA-A1I8-06 4 183713931 183713931 G A TENM3 Missense_Mutation p.E2036K 0.31 deleterious(0.01) possibly_damaging(0.636) TCGA-DA-A1I8-06 4 185329312 185329312 C T IRF2 Missense_Mutation p.V177I 0.47 tolerated(0.22) possibly_damaging(0.622) TCGA-DA-A1I8-06 4 26491812 26491812 C T CCKAR Silent p.T26T 0.27 TCGA-DA-A1I8-06 4 46043129 46043129 C T GABRG1 Missense_Mutation p.G425E 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1I8-06 4 59415 59415 G A ZNF595 Silent p.V32V 0.07 TCGA-DA-A1I8-06 4 74313228 74313228 A T AFP Missense_Mutation p.K298I 0.41 deleterious(0) possibly_damaging(0.794) TCGA-DA-A1I8-06 4 76861192 76861192 C T NAAA Silent p.A111A 0.39 TCGA-DA-A1I8-06 4 85617207 85617207 T C WDFY3 Silent p.Q2939Q 0.18 TCGA-DA-A1I8-06 5 1239663 1239663 T C SLC6A18 Silent p.S277S 0.31 TCGA-DA-A1I8-06 5 140214118 140214118 G A PCDHA7 Silent p.Q50Q 0.76 TCGA-DA-A1I8-06 5 148743682 148743682 C T PCYOX1L Silent p.L127L 0.71 TCGA-DA-A1I8-06 5 150696437 150696437 C T SLC36A2 Missense_Mutation p.E465K 0.86 deleterious(0) possibly_damaging(0.734) TCGA-DA-A1I8-06 5 174937146 174937146 A G SFXN1 Missense_Mutation p.N124D 0.65 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I8-06 5 31983492 31983492 C T PDZD2 Silent p.G236G 0.28 TCGA-DA-A1I8-06 5 40909671 40909671 G A C7 5'UTR 0.27 TCGA-DA-A1I8-06 5 40945325 40945325 A C C7 Missense_Mutation p.Y198S 0.50 tolerated(0.44) benign(0.15) TCGA-DA-A1I8-06 5 54405901 54405901 C - GZMA Frame_Shift_Del p.F228Lfs*27 0.28 TCGA-DA-A1I8-06 5 98223809 98223809 G A CHD1 Missense_Mutation p.R827C 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A1I8-06 6 17837275 17837275 C T KIF13A Missense_Mutation p.S330N 0.62 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I8-06 6 29571439 29571439 G A GABBR1 Missense_Mutation p.R923C 0.37 deleterious(0) probably_damaging(0.99) TCGA-DA-A1I8-06 6 35427183 35427183 C T FANCE Missense_Mutation p.P397S 0.28 tolerated(0.12) possibly_damaging(0.499) TCGA-DA-A1I8-06 6 37606313 37606313 C T MDGA1 Silent p.Q889Q 0.21 TCGA-DA-A1I8-06 6 38980260 38980260 C T DNAH8 Missense_Mutation p.R4304C 0.21 probably_damaging(0.996) TCGA-DA-A1I8-06 6 43098071 43098071 C T PTK7 Missense_Mutation p.P200S 0.63 deleterious(0.02) probably_damaging(0.973) TCGA-DA-A1I8-06 6 45882210 45882210 C T CLIC5 Intron 0.53 TCGA-DA-A1I8-06 6 70071078 70071078 G A BAI3 Missense_Mutation p.E1305K 0.47 deleterious(0.04) possibly_damaging(0.88) TCGA-DA-A1I8-06 6 84375219 84375219 C T SNAP91 Missense_Mutation p.S71N 0.29 deleterious(0) unknown(0) TCGA-DA-A1I8-06 6 85457732 85457732 G A TBX18 Missense_Mutation p.S282F 0.22 deleterious(0) probably_damaging(0.996) TCGA-DA-A1I8-06 7 100684853 100684853 G A MUC17 Missense_Mutation p.G3386S 0.09 benign(0.046) TCGA-DA-A1I8-06 7 100684854 100684854 G A MUC17 Missense_Mutation p.G3386D 0.09 possibly_damaging(0.543) TCGA-DA-A1I8-06 7 100686896 100686896 C T MUC17 Missense_Mutation p.P4067S 0.71 benign(0) TCGA-DA-A1I8-06 7 101183258 101183258 G A COL26A1 Missense_Mutation p.E178K 0.09 tolerated(0.34) benign(0.045) TCGA-DA-A1I8-06 7 107427286 107427286 C T SLC26A3 Silent p.G319G 0.64 TCGA-DA-A1I8-06 7 112724154 112724154 A T GPR85 Missense_Mutation p.F208Y 0.15 deleterious(0) probably_damaging(0.928) TCGA-DA-A1I8-06 7 131866146 131866146 G A PLXNA4 Silent p.I1162I 0.72 TCGA-DA-A1I8-06 7 138968702 138968702 T C UBN2 Silent p.A1017A 0.13 TCGA-DA-A1I8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.74 deleterious(0) probably_damaging(0.967) TCGA-DA-A1I8-06 7 141719032 141719032 C T MGAM Missense_Mutation p.P121S 0.12 tolerated(0.07) benign(0.01) TCGA-DA-A1I8-06 7 142568056 142568056 G A EPHB6 Silent p.Q899Q 0.15 TCGA-DA-A1I8-06 7 142724187 142724187 G A OR9A2 Silent p.F11F 0.60 TCGA-DA-A1I8-06 7 143175707 143175707 C T TAS2R41 Silent p.L248L 0.13 TCGA-DA-A1I8-06 7 150174613 150174613 C T GIMAP8 Silent p.N581N 0.13 TCGA-DA-A1I8-06 7 47880163 47880163 C T PKD1L1 Silent p.V1816V 0.25 TCGA-DA-A1I8-06 7 64452924 64452924 G A ERV3-1 Missense_Mutation p.P161S 0.30 tolerated(0.42) benign(0.119) TCGA-DA-A1I8-06 7 84647598 84647598 G A SEMA3D Silent p.I505I 0.13 TCGA-DA-A1I8-06 7 92731696 92731696 G A SAMD9 Missense_Mutation p.P1239S 0.15 tolerated(0.4) benign(0.023) TCGA-DA-A1I8-06 7 98985735 98985735 G A ARPC1B Silent p.L81L 0.17 TCGA-DA-A1I8-06 8 100115224 100115224 C T VPS13B Silent p.N152N 0.13 TCGA-DA-A1I8-06 8 102570691 102570691 G A GRHL2 Missense_Mutation p.G110E 0.42 tolerated(0.27) benign(0.077) TCGA-DA-A1I8-06 8 110457223 110457223 G A PKHD1L1 Missense_Mutation p.A1709T 0.38 tolerated(0.65) benign(0.005) TCGA-DA-A1I8-06 8 139839024 139839024 C T COL22A1 Silent p.E282E 0.33 TCGA-DA-A1I8-06 8 17611259 17611259 C A MTUS1 Missense_Mutation p.M686I 0.27 tolerated(0.16) benign(0.205) TCGA-DA-A1I8-06 8 2037919 2037919 G A MYOM2 Missense_Mutation p.G578E 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1I8-06 8 39494794 39494794 G A ADAM18 Missense_Mutation p.M200I 0.38 deleterious(0) probably_damaging(0.91) TCGA-DA-A1I8-06 8 41577290 41577290 G C ANK1 Missense_Mutation p.D365E 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A1I8-06 8 55540286 55540286 C T RP1 Missense_Mutation p.P1282S 0.55 tolerated(0.14) benign(0.01) TCGA-DA-A1I8-06 8 57878821 57878821 G A IMPAD1 Missense_Mutation p.S246L 0.43 deleterious(0.01) benign(0.092) TCGA-DA-A1I8-06 8 8560416 8560416 C T CLDN23 Silent p.L170L 0.60 TCGA-DA-A1I8-06 8 87683294 87683294 A T CNGB3 Missense_Mutation p.I124K 0.32 deleterious(0.01) possibly_damaging(0.449) TCGA-DA-A1I8-06 9 114989800 114989800 G A PTBP3 Silent p.L453L 0.72 TCGA-DA-A1I8-06 9 131765638 131765638 G C NUP188 Missense_Mutation p.E1447Q 0.13 tolerated(0.26) benign(0.1) TCGA-DA-A1I8-06 9 135865214 135865214 C G GFI1B Missense_Mutation p.T245R 0.67 deleterious(0) probably_damaging(0.998) TCGA-DA-A1I8-06 9 27950069 27950069 G A LINGO2 Missense_Mutation p.R201C 0.77 deleterious(0.01) benign(0.153) TCGA-DA-A1I8-06 9 95480126 95480126 C T BICD2 Silent p.K737K 0.77 TCGA-DA-A1I8-06 X 101139487 101139487 G A ZMAT1 Silent p.F304F 0.57 TCGA-DA-A1I8-06 X 102338427 102338427 G A NXF3 Missense_Mutation p.H147Y 0.53 deleterious(0) probably_damaging(0.997) TCGA-DA-A1I8-06 X 107923941 107923941 G A COL4A5 Missense_Mutation p.M1325I 0.44 benign(0.293) TCGA-DA-A1I8-06 X 108673535 108673535 C T GUCY2F Splice_Site p.X597_splice 0.54 TCGA-DA-A1I8-06 X 118222293 118222293 G A KIAA1210 Missense_Mutation p.P967L 0.40 deleterious(0.05) probably_damaging(0.943) TCGA-DA-A1I8-06 X 129813711 129813711 G A ENOX2 Missense_Mutation p.P118S 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-DA-A1I8-06 X 134856891 134856891 A C CT45A1 3'UTR 0.05 TCGA-DA-A1I8-06 X 135426739 135426739 C T GPR112 Missense_Mutation p.P292S 0.42 tolerated(0.29) benign(0.007) TCGA-DA-A1I8-06 X 154176015 154176015 G A F8 Missense_Mutation p.P691S 0.62 deleterious(0) probably_damaging(1) TCGA-DA-A1I8-06 X 154194287 154194287 G A F8 Silent p.I467I 0.72 TCGA-DA-A1I8-06 X 31514964 31514964 G A DMD Missense_Mutation p.R2830W 0.58 benign(0.13) TCGA-DA-A1I8-06 X 3240033 3240033 C T MXRA5 Silent p.R1231R 0.59 TCGA-DA-A1IA-06 10 16975241 16975241 A T CUBN Missense_Mutation p.F1990Y 0.41 tolerated(0.12) benign(0.344) TCGA-DA-A1IA-06 10 17737150 17737150 G A STAM Missense_Mutation p.R213Q 0.44 deleterious(0.01) possibly_damaging(0.679) TCGA-DA-A1IA-06 10 18242303 18242303 A T SLC39A12 Missense_Mutation p.D33V 0.31 tolerated(0.1) benign(0.273) TCGA-DA-A1IA-06 10 20357117 20357117 G A PLXDC2 Missense_Mutation p.D164N 0.29 deleterious(0.03) possibly_damaging(0.477) TCGA-DA-A1IA-06 10 27702538 27702538 G A PTCHD3 Silent p.V214V 0.53 TCGA-DA-A1IA-06 10 28229688 28229688 G A ARMC4 Missense_Mutation p.S597L 0.43 tolerated(0.41) benign(0) TCGA-DA-A1IA-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.30 tolerated(0.05) possibly_damaging(0.691) TCGA-DA-A1IA-06 10 5541325 5541325 C T CALML5 Missense_Mutation p.G26D 0.39 deleterious(0) probably_damaging(0.993) TCGA-DA-A1IA-06 10 71164625 71164625 C T TACR2 Missense_Mutation p.G385E 0.43 tolerated_low_confidence(0.07) benign(0.186) TCGA-DA-A1IA-06 10 71164626 71164626 C T TACR2 Missense_Mutation p.G385R 0.43 deleterious_low_confidence(0.04) benign(0.052) TCGA-DA-A1IA-06 10 73059138 73059138 C T UNC5B 3'UTR 0.40 TCGA-DA-A1IA-06 10 73574959 73574959 A C CDH23 Missense_Mutation p.E1090A 0.67 deleterious_low_confidence(0) benign(0.003) TCGA-DA-A1IA-06 10 74671531 74671531 G A OIT3 Missense_Mutation p.E242K 0.46 tolerated(0.31) benign(0.001) TCGA-DA-A1IA-06 10 75059363 75059363 C T TTC18 Silent p.K509K 0.39 TCGA-DA-A1IA-06 10 75158049 75158049 G A ANXA7 Missense_Mutation p.P50L 0.57 deleterious(0) unknown(0) TCGA-DA-A1IA-06 10 76719776 76719776 G A KAT6B Missense_Mutation p.E224K 0.41 probably_damaging(0.991) TCGA-DA-A1IA-06 10 93374 93374 G A TUBB8 Missense_Mutation p.R320C 0.45 deleterious_low_confidence(0.05) possibly_damaging(0.782) TCGA-DA-A1IA-06 11 100909930 100909930 C T PGR Missense_Mutation p.E907K 0.83 deleterious(0) probably_damaging(0.987) TCGA-DA-A1IA-06 11 10516460 10516460 C T AMPD3 Silent p.F392F 0.28 TCGA-DA-A1IA-06 11 124016071 124016071 G T VWA5A Splice_Site p.X761_splice 0.28 TCGA-DA-A1IA-06 11 130060463 130060463 G A ST14 Missense_Mutation p.G250E 0.88 deleterious(0) possibly_damaging(0.853) TCGA-DA-A1IA-06 11 17794196 17794196 T C KCNC1 Intron 0.63 TCGA-DA-A1IA-06 11 35640989 35640989 C T FJX1 Missense_Mutation p.R269W 0.57 deleterious(0.01) probably_damaging(0.986) TCGA-DA-A1IA-06 11 46727458 46727458 T G ZNF408 3'UTR 0.40 TCGA-DA-A1IA-06 11 48347413 48347413 G A OR4C3 Silent p.L307L 0.06 TCGA-DA-A1IA-06 11 5364330 5364330 A T OR51B5 Missense_Mutation p.I142N 0.36 deleterious(0) probably_damaging(0.93) TCGA-DA-A1IA-06 11 5444247 5444247 C T OR51Q1 Silent p.L273L 0.38 TCGA-DA-A1IA-06 11 55038114 55038114 C T TRIM48 3'UTR 0.87 TCGA-DA-A1IA-06 11 55371520 55371520 G A OR4C11 Silent p.I110I 0.68 TCGA-DA-A1IA-06 11 55541105 55541105 C T OR5D13 Silent p.F64F 0.27 TCGA-DA-A1IA-06 11 5566205 5566205 G A OR52H1 Silent p.P183P 0.32 TCGA-DA-A1IA-06 11 56468623 56468623 A G OR9G1 Missense_Mutation p.I254V 0.16 tolerated(0.18) benign(0.06) TCGA-DA-A1IA-06 11 57003368 57003368 G A APLNR Missense_Mutation p.P371S 0.55 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A1IA-06 11 57157407 57157407 G A PRG2 Missense_Mutation p.P4L 0.60 tolerated(0.37) unknown(0) TCGA-DA-A1IA-06 11 59559649 59559649 G A STX3 Missense_Mutation p.E143K 0.58 deleterious(0) possibly_damaging(0.81) TCGA-DA-A1IA-06 11 64021914 64021914 C T PLCB3 Silent p.L43L 0.21 TCGA-DA-A1IA-06 11 65271744 65271744 G A MALAT1 RNA 0.52 TCGA-DA-A1IA-06 11 65310921 65310921 G A LTBP3 Missense_Mutation p.S818F 0.56 deleterious(0) possibly_damaging(0.83) TCGA-DA-A1IA-06 11 65347602 65347602 C T EHBP1L1 Silent p.A121A 0.72 TCGA-DA-A1IA-06 11 65350741 65350741 C T EHBP1L1 Silent p.T866T 0.65 TCGA-DA-A1IA-06 11 65618239 65618239 G A SNX32 Silent p.K172K 0.30 TCGA-DA-A1IA-06 11 66002846 66002846 G A PACS1 Missense_Mutation p.E727K 0.65 deleterious(0.04) probably_damaging(0.984) TCGA-DA-A1IA-06 11 68748403 68748403 G A MRGPRD Missense_Mutation p.S18F 0.67 tolerated(0.47) benign(0.007) TCGA-DA-A1IA-06 11 77412662 77412662 C T RSF1 Missense_Mutation p.E538K 0.58 tolerated_low_confidence(0.36) benign(0.345) TCGA-DA-A1IA-06 11 85397041 85397041 G A CCDC89 Silent p.L45L 0.92 TCGA-DA-A1IA-06 12 109201430 109201430 G A SSH1 Missense_Mutation p.S237F 0.56 deleterious(0.01) probably_damaging(0.984) TCGA-DA-A1IA-06 12 10954813 10954813 G A TAS2R7 Silent p.F119F 0.36 TCGA-DA-A1IA-06 12 110989648 110989648 C A PPTC7 Nonsense_Mutation p.G117* 0.63 TCGA-DA-A1IA-06 12 112237856 112237856 G A ALDH2 Silent p.A465A 0.41 TCGA-DA-A1IA-06 12 112486128 112486128 C T NAA25 Silent p.R616R 0.57 TCGA-DA-A1IA-06 12 112486129 112486129 C T NAA25 Missense_Mutation p.R616Q 0.60 deleterious(0.01) probably_damaging(0.962) TCGA-DA-A1IA-06 12 124330288 124330288 C T DNAH10 Silent p.H1716H 0.48 TCGA-DA-A1IA-06 12 125457055 125457055 G A DHX37 Silent p.I357I 0.49 TCGA-DA-A1IA-06 12 131593342 131593342 G A GPR133 Missense_Mutation p.G654E 0.32 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IA-06 12 132402023 132402023 C T ULK1 Silent p.S750S 0.33 TCGA-DA-A1IA-06 12 14578384 14578384 C T ATF7IP Missense_Mutation p.S512L 0.49 tolerated_low_confidence(0.54) possibly_damaging(0.519) TCGA-DA-A1IA-06 12 24970974 24970974 C G BCAT1 Missense_Mutation p.E389Q 0.64 tolerated(0.56) benign(0.047) TCGA-DA-A1IA-06 12 4479941 4479941 G A FGF23 Silent p.F108F 0.48 TCGA-DA-A1IA-06 12 4721873 4721873 C T DYRK4 Missense_Mutation p.S437L 0.52 tolerated(0.33) benign(0.001) TCGA-DA-A1IA-06 12 48866516 48866516 C T ANP32D Silent p.F23F 0.29 TCGA-DA-A1IA-06 12 52942550 52942550 C T KRT71 Missense_Mutation p.E250K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IA-06 12 53071150 53071150 C T KRT1 Missense_Mutation p.D360N 0.28 deleterious(0.03) possibly_damaging(0.696) TCGA-DA-A1IA-06 12 53722058 53722058 C T SP7 Missense_Mutation p.E390K 0.20 tolerated(0.69) benign(0) TCGA-DA-A1IA-06 12 54105760 54105760 A C CALCOCO1 Missense_Mutation p.F682V 0.21 deleterious_low_confidence(0.01) benign(0.092) TCGA-DA-A1IA-06 12 54686206 54686206 C T NFE2 Silent p.G358G 0.20 TCGA-DA-A1IA-06 12 55421210 55421210 C T NEUROD4 Silent p.F329F 0.31 TCGA-DA-A1IA-06 12 55846759 55846759 C T OR6C2 Silent p.I254I 0.63 TCGA-DA-A1IA-06 12 56355474 56355474 C T PMEL Missense_Mutation p.R40K 0.26 tolerated(0.74) benign(0.013) TCGA-DA-A1IA-06 12 56479031 56479031 G A ERBB3 Intron 0.65 TCGA-DA-A1IA-06 12 6753341 6753341 A C ACRBP Nonsense_Mutation p.Y302* 0.40 TCGA-DA-A1IA-06 12 68553401 68553401 C T IFNG 5'UTR 0.64 TCGA-DA-A1IA-06 12 7805422 7805422 G A APOBEC1 Silent p.I18I 0.46 TCGA-DA-A1IA-06 12 9345254 9345254 G A PZP Missense_Mutation p.R446C 0.52 deleterious(0.03) benign(0.109) TCGA-DA-A1IA-06 13 23911669 23911669 G A SACS Missense_Mutation p.P2116S 0.56 probably_damaging(0.997) TCGA-DA-A1IA-06 13 96293791 96293791 T C DZIP1 Missense_Mutation p.K119E 0.95 deleterious(0) probably_damaging(0.992) TCGA-DA-A1IA-06 14 104026188 104026188 G A BAG5 Silent p.L479L 0.24 TCGA-DA-A1IA-06 14 105477609 105477609 G A CDCA4 Missense_Mutation p.P220S 0.30 tolerated(0.47) benign(0.028) TCGA-DA-A1IA-06 14 20388956 20388956 G A OR4K5 Missense_Mutation p.G64E 0.31 deleterious(0) possibly_damaging(0.77) TCGA-DA-A1IA-06 14 20502632 20502632 C T OR4K13 Missense_Mutation p.G96R 0.20 deleterious(0) probably_damaging(0.984) TCGA-DA-A1IA-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.28 tolerated_low_confidence(0.11) benign(0.004) TCGA-DA-A1IA-06 14 23567135 23567135 T A C14orf119 Missense_Mutation p.S90T 0.33 tolerated(0.51) benign(0.045) TCGA-DA-A1IA-06 14 24975720 24975720 T C CMA1 Silent p.P100P 0.60 TCGA-DA-A1IA-06 14 31354821 31354821 G A COCH Missense_Mutation p.D319N 0.62 tolerated(0.5) benign(0.412) TCGA-DA-A1IA-06 14 65210189 65210189 G A PLEKHG3 Missense_Mutation p.R1087Q 0.66 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IA-06 14 65210190 65210190 G A PLEKHG3 Silent p.R1087R 0.66 TCGA-DA-A1IA-06 14 95107291 95107291 C T SERPINA13P RNA 0.60 TCGA-DA-A1IA-06 14 96157184 96157184 C T TCL1B Missense_Mutation p.P92S 0.18 tolerated(0.19) benign(0.084) TCGA-DA-A1IA-06 15 22969284 22969284 G A CYFIP1 Missense_Mutation p.G837E 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 15 22969285 22969285 G A CYFIP1 Silent p.G837G 0.21 TCGA-DA-A1IA-06 15 24922033 24922033 C T NPAP1 Missense_Mutation p.P340L 0.40 tolerated(0.39) probably_damaging(0.99) TCGA-DA-A1IA-06 15 25304813 25304813 G A SNORD116-3 3'Flank 0.26 TCGA-DA-A1IA-06 15 27572084 27572084 C T GABRG3 Silent p.F133F 0.65 TCGA-DA-A1IA-06 15 45387780 45387780 C T DUOX2 Missense_Mutation p.G1365E 0.50 deleterious(0) probably_damaging(0.978) TCGA-DA-A1IA-06 15 50226364 50226364 C T ATP8B4 Missense_Mutation p.D435N 0.42 tolerated(0.08) benign(0.02) TCGA-DA-A1IA-06 15 63349227 63349227 T G TPM1 Missense_Mutation p.V95G 0.31 deleterious(0) probably_damaging(0.991) TCGA-DA-A1IA-06 15 72700110 72700110 G T TMEM202 Missense_Mutation p.R233I 0.30 deleterious(0) benign(0.002) TCGA-DA-A1IA-06 15 78765610 78765610 G - IREB2 Frame_Shift_Del p.V304Lfs*19 0.36 TCGA-DA-A1IA-06 15 81660594 81660594 C T TMC3 Silent p.E104E 0.58 TCGA-DA-A1IA-06 15 84651197 84651197 C T ADAMTSL3 Silent p.F939F 0.32 TCGA-DA-A1IA-06 15 90260155 90260155 C T WDR93 Missense_Mutation p.P257L 0.24 tolerated(0.11) benign(0.022) TCGA-DA-A1IA-06 15 91486170 91486170 C T UNC45A Silent p.I295I 0.33 TCGA-DA-A1IA-06 16 15133823 15133823 C T NTAN1 Intron 0.18 TCGA-DA-A1IA-06 16 2027060 2027060 C T TBL3 Silent p.I482I 0.53 TCGA-DA-A1IA-06 16 2284258 2284258 G A E4F1 Missense_Mutation p.E488K 0.27 deleterious(0.03) probably_damaging(0.94) TCGA-DA-A1IA-06 16 24366209 24366209 C T CACNG3 Silent p.F117F 0.37 TCGA-DA-A1IA-06 16 27221454 27221454 G A KDM8 Missense_Mutation p.D42N 0.61 tolerated_low_confidence(0.1) benign(0.074) TCGA-DA-A1IA-06 16 29820898 29820898 G A MAZ Silent p.V439V 0.87 TCGA-DA-A1IA-06 16 3014502 3014502 C T KREMEN2 5'UTR 0.10 TCGA-DA-A1IA-06 16 3014503 3014503 C T KREMEN2 5'UTR 0.10 TCGA-DA-A1IA-06 16 30679963 30679963 C T FBRS Silent p.F719F 0.18 TCGA-DA-A1IA-06 16 3190750 3190750 C G ZNF213 Missense_Mutation p.P261R 0.56 tolerated(0.11) benign(0.007) TCGA-DA-A1IA-06 16 58001115 58001115 C T CNGB1 Missense_Mutation p.E26K 0.50 tolerated_low_confidence(0.28) benign(0) TCGA-DA-A1IA-06 16 67318934 67318934 C A PLEKHG4 Missense_Mutation p.P671T 0.71 deleterious(0.03) possibly_damaging(0.771) TCGA-DA-A1IA-06 16 67432122 67432122 G A ZDHHC1 Missense_Mutation p.P307L 0.31 tolerated(0.07) benign(0.007) TCGA-DA-A1IA-06 16 70497570 70497570 C T FUK Silent p.L43L 0.27 TCGA-DA-A1IA-06 16 717536 717536 C T WDR90 Missense_Mutation p.L1732F 0.72 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1IA-06 16 81957190 81957190 C G PLCG2 Missense_Mutation p.P803R 0.24 tolerated(0.09) benign(0.157) TCGA-DA-A1IA-06 16 89347188 89347188 G A ANKRD11 Missense_Mutation p.A1921V 0.60 probably_damaging(0.971) TCGA-DA-A1IA-06 17 10215912 10215912 C T MYH13 Silent p.K1448K 0.53 TCGA-DA-A1IA-06 17 20013830 20013830 G A SPECC1 Missense_Mutation p.G80R 0.27 deleterious(0) probably_damaging(0.974) TCGA-DA-A1IA-06 17 2203844 2203844 G A SMG6 Missense_Mutation p.P68L 0.43 tolerated_low_confidence(0.31) benign(0.005) TCGA-DA-A1IA-06 17 2203845 2203845 G T SMG6 Missense_Mutation p.P68T 0.43 tolerated_low_confidence(0.55) benign(0.017) TCGA-DA-A1IA-06 17 27437631 27437631 G A MYO18A Silent p.I970I 0.52 TCGA-DA-A1IA-06 17 28749859 28749859 C T CPD Missense_Mutation p.S492F 0.39 tolerated(0.09) benign(0.001) TCGA-DA-A1IA-06 17 29231456 29231456 C T TEFM Silent p.K41K 0.21 TCGA-DA-A1IA-06 17 37093469 37093469 C T FBXO47 Missense_Mutation p.E440K 0.41 tolerated(0.22) possibly_damaging(0.729) TCGA-DA-A1IA-06 17 38978795 38978795 G A KRT10 Missense_Mutation p.R15C 0.57 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A1IA-06 17 41577465 41577465 C T DHX8 Missense_Mutation p.P514S 0.39 tolerated(0.15) benign(0.175) TCGA-DA-A1IA-06 17 42248184 42248184 C T ASB16 Silent p.T9T 0.35 TCGA-DA-A1IA-06 17 42449774 42449774 C T ITGA2B Silent p.R1026R 0.44 TCGA-DA-A1IA-06 17 4621248 4621248 C T ARRB2 Missense_Mutation p.S205L 0.50 tolerated(0.38) probably_damaging(0.988) TCGA-DA-A1IA-06 17 51902278 51902278 T C KIF2B Silent p.G628G 0.20 TCGA-DA-A1IA-06 17 56348214 56348214 C G MPO Missense_Mutation p.E681Q 0.57 tolerated(0.24) benign(0.069) TCGA-DA-A1IA-06 17 57430800 57430800 C T YPEL2 Silent p.F10F 0.54 TCGA-DA-A1IA-06 17 57430801 57430801 C T YPEL2 Nonsense_Mutation p.Q11* 0.54 TCGA-DA-A1IA-06 17 58512627 58512627 C T C17orf64 3'Flank 0.50 TCGA-DA-A1IA-06 17 60003782 60003782 G A INTS2 Missense_Mutation p.S83F 0.37 deleterious(0.04) possibly_damaging(0.879) TCGA-DA-A1IA-06 17 60003783 60003783 A C INTS2 Missense_Mutation p.S83A 0.37 tolerated(0.08) benign(0.022) TCGA-DA-A1IA-06 17 61622496 61622496 C T KCNH6 Silent p.P854P 0.28 TCGA-DA-A1IA-06 17 62474035 62474035 G A POLG2 Silent p.L455L 0.36 TCGA-DA-A1IA-06 17 685549 685549 G A GLOD4 5'UTR 0.47 TCGA-DA-A1IA-06 17 72367875 72367875 C T GPR142 Silent p.L175L 0.38 TCGA-DA-A1IA-06 17 74470502 74470502 G A RHBDF2 Nonsense_Mutation p.Q502* 0.63 TCGA-DA-A1IA-06 17 75471848 75471848 G A SEPT9 Intron 0.46 TCGA-DA-A1IA-06 17 78363957 78363957 C T RNF213 Missense_Mutation p.P5144L 0.42 benign(0.006) TCGA-DA-A1IA-06 17 78363958 78363958 C T RNF213 Silent p.P5144P 0.41 TCGA-DA-A1IA-06 17 78972194 78972194 C T CHMP6 Missense_Mutation p.S175F 0.29 deleterious(0) possibly_damaging(0.639) TCGA-DA-A1IA-06 17 78972195 78972195 C T CHMP6 Silent p.S175S 0.29 TCGA-DA-A1IA-06 17 79249886 79249886 G A SLC38A10 Silent p.P265P 0.51 TCGA-DA-A1IA-06 17 79414271 79414271 G T RP11-1055B8.7 Nonsense_Mutation p.E1125* 0.41 TCGA-DA-A1IA-06 17 79478221 79478221 G A ACTG1 Silent p.S265S 0.52 TCGA-DA-A1IA-06 18 12325477 12325477 C T TUBB6 Missense_Mutation p.S230F 0.54 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DA-A1IA-06 18 12325478 12325478 C T TUBB6 Silent p.S230S 0.55 TCGA-DA-A1IA-06 18 47810872 47810872 G A CXXC1 Missense_Mutation p.P365S 0.41 tolerated(1) benign(0.003) TCGA-DA-A1IA-06 18 47810873 47810873 G A CXXC1 Silent p.H364H 0.38 TCGA-DA-A1IA-06 18 63477063 63477063 C T CDH7 Missense_Mutation p.R112C 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 18 74154768 74154768 G A ZNF516 Silent p.I81I 0.50 TCGA-DA-A1IA-06 18 74587518 74587518 G A ZNF236 Missense_Mutation p.M244I 0.35 tolerated(0.06) benign(0.417) TCGA-DA-A1IA-06 18 8784535 8784535 C T SOGA2 Silent p.T475T 0.54 TCGA-DA-A1IA-06 19 11891143 11891143 C T ZNF441 Silent p.L168L 0.30 TCGA-DA-A1IA-06 19 14070065 14070065 C T DCAF15 Silent p.A331A 0.25 TCGA-DA-A1IA-06 19 14521053 14521053 G A DDX39A Missense_Mutation p.P236L 0.28 tolerated(0.07) benign(0.013) TCGA-DA-A1IA-06 19 14740969 14740969 C T EMR3 Nonsense_Mutation p.W565* 0.38 TCGA-DA-A1IA-06 19 16687167 16687167 G A MED26 Missense_Mutation p.R492W 0.59 deleterious(0.02) possibly_damaging(0.667) TCGA-DA-A1IA-06 19 22271732 22271732 C T ZNF257 Missense_Mutation p.H394Y 0.33 deleterious(0.01) possibly_damaging(0.577) TCGA-DA-A1IA-06 19 2233889 2233889 A G PLEKHJ1 Missense_Mutation p.F134L 0.65 tolerated(0.06) benign(0.003) TCGA-DA-A1IA-06 19 3005473 3005473 C T TLE2 Missense_Mutation p.E620K 0.72 deleterious(0) benign(0.429) TCGA-DA-A1IA-06 19 36499629 36499629 G A SYNE4 5'UTR 0.40 TCGA-DA-A1IA-06 19 39517597 39517597 T C FBXO27 Silent p.Q207Q 0.56 TCGA-DA-A1IA-06 19 39847636 39847636 C T SAMD4B Missense_Mutation p.R35C 0.56 tolerated(0.06) benign(0.032) TCGA-DA-A1IA-06 19 41063226 41063226 C T SPTBN4 Missense_Mutation p.P1863S 0.52 tolerated(0.18) possibly_damaging(0.647) TCGA-DA-A1IA-06 19 41186951 41186951 G A NUMBL Silent p.V137V 0.68 TCGA-DA-A1IA-06 19 41510233 41510233 G - CYP2B6 Frame_Shift_Del p.V123Cfs*7 0.26 TCGA-DA-A1IA-06 19 41898847 41898847 C T EXOSC5 Missense_Mutation p.E63K 0.16 deleterious(0.01) probably_damaging(0.966) TCGA-DA-A1IA-06 19 42480654 42480654 C T ATP1A3 Missense_Mutation p.E683K 0.27 tolerated(0.18) possibly_damaging(0.553) TCGA-DA-A1IA-06 19 42793554 42793554 C T CIC Silent p.V452V 0.67 TCGA-DA-A1IA-06 19 43025622 43025622 C T CEACAM1 Missense_Mutation p.G252E 0.52 deleterious(0.02) benign(0.165) TCGA-DA-A1IA-06 19 43025623 43025623 C T CEACAM1 Missense_Mutation p.G252R 0.52 deleterious(0.03) possibly_damaging(0.507) TCGA-DA-A1IA-06 19 43411751 43411751 T C PSG6 Missense_Mutation p.N321S 0.29 tolerated(0.58) benign(0.102) TCGA-DA-A1IA-06 19 44891168 44891168 G A ZNF285 Silent p.S413S 0.40 TCGA-DA-A1IA-06 19 48785633 48785633 G C ZNF114 Silent p.S5S 0.31 TCGA-DA-A1IA-06 19 50374974 50374974 C T AKT1S1 Splice_Site p.X173_splice 0.28 TCGA-DA-A1IA-06 19 50958509 50958509 G A MYBPC2 Missense_Mutation p.G720E 0.59 deleterious(0) probably_damaging(0.982) TCGA-DA-A1IA-06 19 51984693 51984693 G A CEACAM18 Silent p.V210V 0.31 TCGA-DA-A1IA-06 19 52376081 52376081 C A ZNF577 Nonsense_Mutation p.E388* 0.27 TCGA-DA-A1IA-06 19 53770138 53770138 T C VN1R4 Missense_Mutation p.N261D 0.48 tolerated(0.09) benign(0.073) TCGA-DA-A1IA-06 19 53855350 53855350 G A ZNF845 Silent p.K474K 0.72 TCGA-DA-A1IA-06 19 53855609 53855609 C G ZNF845 Missense_Mutation p.R561G 0.67 tolerated(0.34) possibly_damaging(0.871) TCGA-DA-A1IA-06 19 55493636 55493636 G A NLRP2 Silent p.K190K 0.26 TCGA-DA-A1IA-06 19 55789055 55789055 G A HSPBP1 Silent p.L124L 0.67 TCGA-DA-A1IA-06 19 55789056 55789056 G A HSPBP1 Silent p.A123A 0.67 TCGA-DA-A1IA-06 19 56423635 56423635 G A NLRP13 Silent p.L516L 0.29 TCGA-DA-A1IA-06 19 57335018 57335018 C T PEG3 Missense_Mutation p.D142N 0.50 tolerated(0.11) benign(0.401) TCGA-DA-A1IA-06 19 608049 608049 C T HCN2 Missense_Mutation p.P435L 0.27 deleterious(0) probably_damaging(0.976) TCGA-DA-A1IA-06 19 6165878 6165878 G A ACSBG2 Nonsense_Mutation p.W197* 0.20 TCGA-DA-A1IA-06 19 7593764 7593764 C T MCOLN1 Silent p.L348L 0.68 TCGA-DA-A1IA-06 19 8610597 8610597 G A MYO1F Silent p.I431I 0.64 TCGA-DA-A1IA-06 19 9057803 9057803 C T MUC16 Silent p.E9881E 0.36 TCGA-DA-A1IA-06 19 9226424 9226424 G A OR7G1 Nonsense_Mutation p.Q6* 0.56 TCGA-DA-A1IA-06 1 10714522 10714522 C T CASZ1 Missense_Mutation p.A598T 0.32 tolerated(0.32) benign(0.082) TCGA-DA-A1IA-06 1 109607282 109607282 G A TAF13 Nonsense_Mutation p.R80* 0.35 TCGA-DA-A1IA-06 1 11129707 11129707 G A EXOSC10 Silent p.L799L 0.26 TCGA-DA-A1IA-06 1 111964242 111964242 C T OVGP1 Missense_Mutation p.R221K 0.26 tolerated(1) benign(0.001) TCGA-DA-A1IA-06 1 115829417 115829417 T G NGF 5'UTR 0.34 TCGA-DA-A1IA-06 1 145522632 145522632 C G PEX11B Missense_Mutation p.P165A 0.25 tolerated(0.78) benign(0) TCGA-DA-A1IA-06 1 145522633 145522633 C T PEX11B Missense_Mutation p.P165L 0.26 tolerated(0.53) benign(0) TCGA-DA-A1IA-06 1 146759371 146759371 C T CHD1L Missense_Mutation p.A760V 0.23 tolerated(0.18) benign(0.066) TCGA-DA-A1IA-06 1 150443078 150443078 C T RPRD2 Missense_Mutation p.P552S 0.19 tolerated_low_confidence(0.47) benign(0.055) TCGA-DA-A1IA-06 1 151395903 151395903 C T POGZ Missense_Mutation p.E550K 0.18 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IA-06 1 152944577 152944577 C T SPRR4 Nonsense_Mutation p.Q71* 0.14 TCGA-DA-A1IA-06 1 154542297 154542297 T C CHRNB2 Silent p.N80N 0.76 TCGA-DA-A1IA-06 1 154987922 154987922 C T ZBTB7B Silent p.S296S 0.33 TCGA-DA-A1IA-06 1 155922578 155922578 G C ARHGEF2 Missense_Mutation p.R609G 0.16 deleterious(0.02) benign(0.012) TCGA-DA-A1IA-06 1 156108345 156108345 G C LMNA Missense_Mutation p.G589R 0.07 tolerated_low_confidence(0.07) benign(0.051) TCGA-DA-A1IA-06 1 156555590 156555590 G A TTC24 Silent p.G514G 0.17 TCGA-DA-A1IA-06 1 156811287 156811287 G A INSRR Silent p.T1187T 0.77 TCGA-DA-A1IA-06 1 156909447 156909447 G A ARHGEF11 Missense_Mutation p.P1330L 0.85 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DA-A1IA-06 1 156909448 156909448 G A ARHGEF11 Missense_Mutation p.P1330S 0.84 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-DA-A1IA-06 1 157667438 157667438 C T FCRL3 Intron 0.68 TCGA-DA-A1IA-06 1 158517501 158517501 C A OR6Y1 Missense_Mutation p.C132F 0.60 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IA-06 1 158517822 158517822 C T OR6Y1 Missense_Mutation p.R25Q 0.41 tolerated(0.35) benign(0.002) TCGA-DA-A1IA-06 1 159166744 159166744 T - CADM3 Frame_Shift_Del p.S316Rfs*3 0.09 TCGA-DA-A1IA-06 1 165697279 165697279 G A TMCO1 Missense_Mutation p.P234L 0.12 deleterious_low_confidence(0.01) benign(0.311) TCGA-DA-A1IA-06 1 167778983 167778983 C T ADCY10 Missense_Mutation p.V1589I 0.72 tolerated(0.23) benign(0.045) TCGA-DA-A1IA-06 1 173596225 173596225 C T ANKRD45 Silent p.G190G 0.53 TCGA-DA-A1IA-06 1 175360466 175360466 C T TNR Missense_Mutation p.E489K 0.33 tolerated(0.14) possibly_damaging(0.626) TCGA-DA-A1IA-06 1 178420721 178420721 C T RASAL2 Missense_Mutation p.A548V 0.30 deleterious(0) probably_damaging(0.991) TCGA-DA-A1IA-06 1 186106694 186106694 C T HMCN1 Silent p.I4549I 0.52 TCGA-DA-A1IA-06 1 186120332 186120332 G A HMCN1 Missense_Mutation p.G4870D 0.55 probably_damaging(0.999) TCGA-DA-A1IA-06 1 19582531 19582531 C T MRTO4 Silent p.A59A 0.55 TCGA-DA-A1IA-06 1 197069625 197069625 C T ASPM Missense_Mutation p.R2919K 0.48 tolerated(0.29) benign(0.269) TCGA-DA-A1IA-06 1 200572356 200572356 T C KIF14 Silent p.T659T 0.41 TCGA-DA-A1IA-06 1 202128597 202128597 C T PTPN7 Intron 0.47 TCGA-DA-A1IA-06 1 202269987 202269989 AAC - LGR6 In_Frame_Del p.N268del 0.14 TCGA-DA-A1IA-06 1 204125925 204125925 C T REN Splice_Site p.X233_splice 0.55 TCGA-DA-A1IA-06 1 204587774 204587774 G A LRRN2 Silent p.A449A 0.34 TCGA-DA-A1IA-06 1 204587775 204587775 G A LRRN2 Missense_Mutation p.A449V 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 1 205041102 205041102 G A CNTN2 Missense_Mutation p.E858K 0.43 deleterious(0) possibly_damaging(0.835) TCGA-DA-A1IA-06 1 205053200 205053200 G A TMEM81 Silent p.T83T 0.58 TCGA-DA-A1IA-06 1 216017711 216017711 G A USH2A Silent p.L3061L 0.62 TCGA-DA-A1IA-06 1 219366544 219366544 G T LYPLAL1 Missense_Mutation p.L104F 0.70 deleterious(0.03) possibly_damaging(0.551) TCGA-DA-A1IA-06 1 228596250 228596250 G A TRIM17 Silent p.D362D 0.17 TCGA-DA-A1IA-06 1 23234598 23234598 G A EPHB2 Silent p.S764S 0.70 TCGA-DA-A1IA-06 1 23688758 23688758 G A ZNF436 Missense_Mutation p.R373W 0.59 tolerated(0.2) probably_damaging(0.92) TCGA-DA-A1IA-06 1 24078019 24078019 C T TCEB3 Silent p.S334S 0.33 TCGA-DA-A1IA-06 1 24078020 24078020 C T TCEB3 Silent p.L335L 0.32 TCGA-DA-A1IA-06 1 246797225 246797225 G A CNST Splice_Site p.X206_splice 0.24 TCGA-DA-A1IA-06 1 247769226 247769226 C T OR2G3 Silent p.I113I 0.64 TCGA-DA-A1IA-06 1 247978344 247978344 C T OR14A16 Missense_Mutation p.E230K 0.42 tolerated(0.05) benign(0.05) TCGA-DA-A1IA-06 1 32650174 32650174 C T TXLNA Missense_Mutation p.P185L 0.26 deleterious(0) probably_damaging(0.948) TCGA-DA-A1IA-06 1 38027681 38027681 G A DNALI1 Splice_Site p.X215_splice 0.21 TCGA-DA-A1IA-06 1 38423935 38423935 C T SF3A3 Missense_Mutation p.E477K 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 1 45470324 45470324 G A HECTD3 Missense_Mutation p.S697F 0.57 tolerated(0.05) benign(0.361) TCGA-DA-A1IA-06 1 62349916 62349916 C T INADL Silent p.I989I 0.62 TCGA-DA-A1IA-06 1 63099247 63099247 T A DOCK7 Silent p.L346L 0.29 TCGA-DA-A1IA-06 1 6605240 6605240 T C NOL9 Missense_Mutation p.S249G 0.24 tolerated(0.24) benign(0.002) TCGA-DA-A1IA-06 1 74492586 74492586 C T LRRIQ3 Missense_Mutation p.A596T 0.56 tolerated(0.3) benign(0.091) TCGA-DA-A1IA-06 1 75596445 75596445 G A LHX8 Intron 0.64 TCGA-DA-A1IA-06 1 75740649 75740649 G A SLC44A5 Missense_Mutation p.P85L 0.72 tolerated(0.14) benign(0.039) TCGA-DA-A1IA-06 1 92752119 92752119 C T GLMN Silent p.L221L 0.52 TCGA-DA-A1IA-06 1 9307129 9307129 C T H6PD Silent p.T244T 0.56 TCGA-DA-A1IA-06 1 99167425 99167425 A C SNX7 Missense_Mutation p.E364A 0.58 deleterious(0.04) possibly_damaging(0.611) TCGA-DA-A1IA-06 20 16729116 16729116 G A OTOR Missense_Mutation p.D24N 0.61 deleterious(0.03) possibly_damaging(0.632) TCGA-DA-A1IA-06 20 32194823 32194823 C T CBFA2T2 Silent p.S41S 0.48 TCGA-DA-A1IA-06 20 34025689 34025689 A T GDF5 Missense_Mutation p.L7H 0.38 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-DA-A1IA-06 20 36965663 36965663 G A BPI 3'UTR 0.55 TCGA-DA-A1IA-06 20 43386399 43386399 G A RIMS4 Silent p.I122I 0.48 TCGA-DA-A1IA-06 20 47865830 47865830 C T ZNFX1 Missense_Mutation p.S1244N 0.21 tolerated(0.14) benign(0.16) TCGA-DA-A1IA-06 20 62369602 62369602 G A LIME1 Missense_Mutation p.G112E 0.38 tolerated(0.28) benign(0.197) TCGA-DA-A1IA-06 20 9510539 9510539 C T LAMP5 3'UTR 0.67 TCGA-DA-A1IA-06 21 11039049 11039049 C T BAGE2 RNA 0.05 TCGA-DA-A1IA-06 21 15538740 15538740 C T LIPI Missense_Mutation p.D247N 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 21 41033308 41033308 C T B3GALT5 Silent p.S274S 0.26 TCGA-DA-A1IA-06 21 41514628 41514628 G A DSCAM Missense_Mutation p.P1088L 0.65 deleterious(0) possibly_damaging(0.734) TCGA-DA-A1IA-06 21 47860047 47860047 C T PCNT Silent p.L3109L 0.69 TCGA-DA-A1IA-06 22 19467412 19467412 C T CDC45 5'Flank 0.63 TCGA-DA-A1IA-06 22 19467413 19467413 C T CDC45 5'Flank 0.57 TCGA-DA-A1IA-06 22 24034591 24034591 G A RGL4 Silent p.R83R 0.45 TCGA-DA-A1IA-06 22 24563275 24563275 C T CABIN1 Silent p.I1892I 0.37 TCGA-DA-A1IA-06 22 31521951 31521951 C T INPP5J Intron 0.37 TCGA-DA-A1IA-06 22 37398024 37398024 G A TEX33 Missense_Mutation p.P115S 0.41 tolerated(0.23) possibly_damaging(0.803) TCGA-DA-A1IA-06 22 46786311 46786311 G A CELSR1 Missense_Mutation p.S2108F 0.42 deleterious(0) benign(0.013) TCGA-DA-A1IA-06 22 50942015 50942015 G A LMF2 Silent p.L643L 0.56 TCGA-DA-A1IA-06 2 108609495 108609495 A G SLC5A7 Silent p.Q120Q 0.32 TCGA-DA-A1IA-06 2 113147106 113147106 C T RGPD8 Missense_Mutation p.G1139D 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A1IA-06 2 11919762 11919762 G A LPIN1 Silent p.Q365Q 0.29 TCGA-DA-A1IA-06 2 120236412 120236412 G A SCTR Silent p.F92F 0.71 TCGA-DA-A1IA-06 2 128186241 128186241 C T PROC Missense_Mutation p.P369S 0.26 tolerated(0.38) benign(0.04) TCGA-DA-A1IA-06 2 128877960 128877960 G A UGGT1 Silent p.L301L 0.29 TCGA-DA-A1IA-06 2 137814554 137814554 G A THSD7B Missense_Mutation p.G235E 0.31 tolerated(0.42) probably_damaging(0.968) TCGA-DA-A1IA-06 2 138169234 138169234 G C THSD7B Missense_Mutation p.E917D 0.26 deleterious(0.01) benign(0.388) TCGA-DA-A1IA-06 2 139428742 139428742 G A NXPH2 Missense_Mutation p.S182F 0.48 deleterious(0) possibly_damaging(0.821) TCGA-DA-A1IA-06 2 149853801 149853801 C T KIF5C Nonsense_Mutation p.Q683* 0.52 TCGA-DA-A1IA-06 2 152348943 152348943 G A NEB Silent p.P8277P 0.38 TCGA-DA-A1IA-06 2 152348944 152348944 G A NEB Missense_Mutation p.P8277L 0.37 probably_damaging(1) TCGA-DA-A1IA-06 2 168105182 168105182 C T XIRP2 Missense_Mutation p.P2427L 0.53 possibly_damaging(0.843) TCGA-DA-A1IA-06 2 171863068 171863068 G A TLK1 Missense_Mutation p.R562W 0.64 deleterious(0.03) benign(0.189) TCGA-DA-A1IA-06 2 174062917 174062917 C T MLTK Intron 0.28 TCGA-DA-A1IA-06 2 178704997 178704997 T A PDE11A Missense_Mutation p.D494V 0.56 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IA-06 2 179395891 179395891 C T TTN Missense_Mutation p.D35151N 0.27 TCGA-DA-A1IA-06 2 179457349 179457349 C T TTN Missense_Mutation p.E19795K 0.24 TCGA-DA-A1IA-06 2 179605026 179605026 C T TTN Missense_Mutation p.E4312K 0.26 TCGA-DA-A1IA-06 2 18113307 18113307 C T KCNS3 Silent p.S344S 0.63 TCGA-DA-A1IA-06 2 191931195 191931207 TGTCAAAACTTCC - STAT4 Frame_Shift_Del p.Q193Hfs*20 0.19 TCGA-DA-A1IA-06 2 197184050 197184050 C T HECW2 Missense_Mutation p.E522K 0.18 tolerated_low_confidence(0.3) benign(0.015) TCGA-DA-A1IA-06 2 202466469 202466469 G A ALS2CR11 Missense_Mutation p.S170F 0.38 deleterious(0) benign(0.181) TCGA-DA-A1IA-06 2 203242116 203242116 G A BMPR2 5'UTR 0.33 TCGA-DA-A1IA-06 2 207174952 207174952 C T ZDBF2 Silent p.V1900V 0.49 TCGA-DA-A1IA-06 2 209180074 209180074 C T PIKFYVE Missense_Mutation p.R662C 0.50 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 2 220346119 220346119 C T SPEG Silent p.F1821F 0.24 TCGA-DA-A1IA-06 2 220346120 220346120 C T SPEG Silent p.L1822L 0.25 TCGA-DA-A1IA-06 2 233660923 233660923 A C GIGYF2 Missense_Mutation p.E565A 0.24 probably_damaging(0.974) TCGA-DA-A1IA-06 2 27695080 27695080 G A IFT172 Intron 0.30 TCGA-DA-A1IA-06 2 27886492 27886492 G A SLC4A1AP 5'UTR 0.40 TCGA-DA-A1IA-06 2 32828126 32828126 T G BIRC6 Missense_Mutation p.N4682K 0.20 probably_damaging(0.965) TCGA-DA-A1IA-06 2 42578482 42578482 G A COX7A2L Silent p.P74P 0.29 TCGA-DA-A1IA-06 2 48066079 48066079 G A FBXO11 Missense_Mutation p.S169F 0.49 deleterious(0) possibly_damaging(0.751) TCGA-DA-A1IA-06 2 71191956 71191956 G A ATP6V1B1 Missense_Mutation p.E447K 0.22 tolerated(0.25) possibly_damaging(0.894) TCGA-DA-A1IA-06 2 86444108 86444108 C T REEP1 3'UTR 0.50 TCGA-DA-A1IA-06 3 1189690 1189690 G A CNTN6 5'UTR 0.42 TCGA-DA-A1IA-06 3 121838441 121838441 G T CD86 3'UTR 0.29 TCGA-DA-A1IA-06 3 137790660 137790660 C A DZIP1L Silent p.S480S 0.42 TCGA-DA-A1IA-06 3 140185541 140185541 C T CLSTN2 Missense_Mutation p.R438C 0.40 deleterious(0) probably_damaging(0.969) TCGA-DA-A1IA-06 3 14538038 14538038 C T GRIP2 RNA 0.56 TCGA-DA-A1IA-06 3 182933875 182933875 G A MCF2L2 Missense_Mutation p.P793L 0.36 tolerated(0.26) benign(0.23) TCGA-DA-A1IA-06 3 182933876 182933876 G A MCF2L2 Missense_Mutation p.P793S 0.36 tolerated(0.07) benign(0.139) TCGA-DA-A1IA-06 3 183547344 183547344 G A PARL 3'UTR 0.42 TCGA-DA-A1IA-06 3 186760840 186760840 C T ST6GAL1 Silent p.L117L 0.26 TCGA-DA-A1IA-06 3 187387014 187387014 C T SST Missense_Mutation p.E64K 0.40 tolerated(0.16) benign(0.012) TCGA-DA-A1IA-06 3 19554559 19554559 C T KCNH8 Missense_Mutation p.S726F 0.45 deleterious(0.03) benign(0.303) TCGA-DA-A1IA-06 3 38169314 38169314 C T ACAA1 Missense_Mutation p.E197K 0.40 tolerated(0.25) benign(0.051) TCGA-DA-A1IA-06 3 423920 423920 G A CHL1 Silent p.R645R 0.44 TCGA-DA-A1IA-06 3 43381975 43381975 C T SNRK Nonsense_Mutation p.R310* 0.38 TCGA-DA-A1IA-06 3 44434432 44434432 G A TCAIM Missense_Mutation p.D220N 0.38 tolerated(0.38) benign(0.004) TCGA-DA-A1IA-06 3 45637070 45637070 C T LIMD1 Silent p.S233S 0.50 TCGA-DA-A1IA-06 3 45637071 45637071 C T LIMD1 Silent p.L234L 0.50 TCGA-DA-A1IA-06 3 47604201 47604201 C T CSPG5 Silent p.L530L 0.44 TCGA-DA-A1IA-06 3 52088053 52088053 G A DUSP7 Silent p.F285F 0.40 TCGA-DA-A1IA-06 3 52256090 52256090 G A TLR9 Silent p.L902L 0.33 TCGA-DA-A1IA-06 3 54914841 54914841 C T CACNA2D3 Silent p.S621S 0.41 TCGA-DA-A1IA-06 3 96962851 96962851 T A EPHA6 Silent p.I442I 0.46 TCGA-DA-A1IA-06 3 98600535 98600535 G A DCBLD2 Silent p.P94P 0.39 TCGA-DA-A1IA-06 4 123160753 123160753 C T KIAA1109 Missense_Mutation p.P1306S 0.92 probably_damaging(0.998) TCGA-DA-A1IA-06 4 123160754 123160754 C T KIAA1109 Missense_Mutation p.P1306L 0.92 probably_damaging(0.999) TCGA-DA-A1IA-06 4 164087677 164087677 T G NAF1 Missense_Mutation p.Q68P 1.00 tolerated_low_confidence(0.16) benign(0) TCGA-DA-A1IA-06 4 186380710 186380710 G C CCDC110 Missense_Mutation p.S344C 0.93 deleterious(0) probably_damaging(0.979) TCGA-DA-A1IA-06 4 2933363 2933363 G A MFSD10 Silent p.L314L 0.83 TCGA-DA-A1IA-06 4 3255159 3255159 C T MSANTD1 Silent p.F182F 0.87 TCGA-DA-A1IA-06 4 41992694 41992694 C T SLC30A9 Missense_Mutation p.A9V 0.91 tolerated_low_confidence(0.08) benign(0) TCGA-DA-A1IA-06 4 651263 651263 G A PDE6B Missense_Mutation p.D461N 0.80 deleterious(0.04) benign(0.018) TCGA-DA-A1IA-06 4 77660489 77660489 G A SHROOM3 Missense_Mutation p.R388Q 0.95 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IA-06 4 77660490 77660490 G A SHROOM3 Silent p.R388R 0.95 TCGA-DA-A1IA-06 5 101726728 101726728 A C SLCO6A1 Silent p.R612R 0.24 TCGA-DA-A1IA-06 5 114566678 114566678 G A PGGT1B Missense_Mutation p.S218F 0.57 deleterious(0) probably_damaging(0.984) TCGA-DA-A1IA-06 5 114879096 114879096 G A FEM1C Missense_Mutation p.S32F 0.63 deleterious(0.04) benign(0.094) TCGA-DA-A1IA-06 5 121726781 121726781 C T SNCAIP Intron 0.33 TCGA-DA-A1IA-06 5 127863631 127863631 C T FBN2 Missense_Mutation p.G156S 0.34 deleterious(0) possibly_damaging(0.855) TCGA-DA-A1IA-06 5 140182850 140182850 G A PCDHA3 Missense_Mutation p.E690K 0.60 tolerated_low_confidence(0.1) benign(0.061) TCGA-DA-A1IA-06 5 140255556 140255556 C T PCDHA12 Missense_Mutation p.L167F 0.26 tolerated_low_confidence(0.05) benign(0.281) TCGA-DA-A1IA-06 5 140530730 140530730 G - PCDHB6 Frame_Shift_Del p.E298Kfs*4 0.22 TCGA-DA-A1IA-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.16 tolerated_low_confidence(0.62) benign(0) TCGA-DA-A1IA-06 5 140730571 140730571 C T PCDHGB1 Silent p.L248L 0.60 TCGA-DA-A1IA-06 5 140730572 140730572 C T PCDHGB1 Nonsense_Mutation p.Q249* 0.60 TCGA-DA-A1IA-06 5 147781989 147781989 C T FBXO38 Missense_Mutation p.R169C 0.56 deleterious(0) probably_damaging(0.992) TCGA-DA-A1IA-06 5 150666905 150666905 C T SLC36A3 Missense_Mutation p.V245M 0.19 deleterious(0) probably_damaging(0.919) TCGA-DA-A1IA-06 5 151239346 151239346 C T GLRA1 Missense_Mutation p.R159K 0.27 deleterious(0.02) probably_damaging(0.913) TCGA-DA-A1IA-06 5 154393924 154393924 G A KIF4B Missense_Mutation p.E169K 0.23 tolerated(0.15) possibly_damaging(0.456) TCGA-DA-A1IA-06 5 176931637 176931637 G A DOK3 Missense_Mutation p.R280C 0.48 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IA-06 5 179996226 179996226 G A CNOT6 Missense_Mutation p.E382K 0.76 deleterious(0.02) benign(0.411) TCGA-DA-A1IA-06 5 180041131 180041131 C T FLT4 Missense_Mutation p.V1090M 0.19 deleterious(0) probably_damaging(0.961) TCGA-DA-A1IA-06 5 180041132 180041132 C T FLT4 Silent p.K1089K 0.20 TCGA-DA-A1IA-06 5 180335636 180335636 G A BTNL8 Missense_Mutation p.E34K 0.60 tolerated(0.07) probably_damaging(0.945) TCGA-DA-A1IA-06 5 23526583 23526583 C T PRDM9 Silent p.L462L 0.33 TCGA-DA-A1IA-06 5 33964076 33964076 G A SLC45A2 Missense_Mutation p.A203V 0.44 tolerated(0.27) benign(0.022) TCGA-DA-A1IA-06 5 40936474 40936474 G A C7 Silent p.G105G 0.36 TCGA-DA-A1IA-06 5 54593125 54593125 G A DHX29 Silent p.A121A 0.68 TCGA-DA-A1IA-06 5 54593126 54593126 G A DHX29 Missense_Mutation p.A121V 0.64 deleterious(0.03) benign(0.164) TCGA-DA-A1IA-06 5 64914040 64914040 C T TRIM23 Missense_Mutation p.G42R 0.76 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IA-06 5 66480083 66480083 C T CD180 Silent p.L196L 0.20 TCGA-DA-A1IA-06 5 72801077 72801077 C T BTF3 3'UTR 0.62 TCGA-DA-A1IA-06 6 106968006 106968006 A T AIM1 Missense_Mutation p.I567F 0.93 deleterious_low_confidence(0.01) possibly_damaging(0.494) TCGA-DA-A1IA-06 6 109770953 109770953 G A MICAL1 Silent p.S447S 0.82 TCGA-DA-A1IA-06 6 131190968 131190968 G A EPB41L2 Missense_Mutation p.P781L 0.88 tolerated(0.05) benign(0.054) TCGA-DA-A1IA-06 6 13306733 13306733 G A TBC1D7 Missense_Mutation p.S231F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IA-06 6 138413187 138413187 A C PERP Missense_Mutation p.S192A 1.00 deleterious(0.01) benign(0.037) TCGA-DA-A1IA-06 6 139564176 139564176 C T TXLNB Silent p.E514E 0.31 TCGA-DA-A1IA-06 6 155485620 155485620 C T TIAM2 Silent p.S700S 0.89 TCGA-DA-A1IA-06 6 155485621 155485621 C T TIAM2 Silent p.L701L 0.88 TCGA-DA-A1IA-06 6 155732481 155732481 C T NOX3 Nonsense_Mutation p.W441* 0.96 TCGA-DA-A1IA-06 6 166923792 166923792 G A RPS6KA2 Missense_Mutation p.H126Y 0.83 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IA-06 6 167786682 167786682 G A TCP10 Missense_Mutation p.P319L 0.46 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-DA-A1IA-06 6 26392817 26392817 C T BTN2A2 Silent p.V398V 0.45 TCGA-DA-A1IA-06 6 31675288 31675288 C T LY6G6F Missense_Mutation p.P36S 0.41 deleterious(0.01) probably_damaging(0.96) TCGA-DA-A1IA-06 6 3225099 3225099 G A TUBB2B Silent p.F408F 0.16 TCGA-DA-A1IA-06 6 34826300 34826300 C T UHRF1BP1 Missense_Mutation p.P723S 0.16 tolerated(0.05) possibly_damaging(0.742) TCGA-DA-A1IA-06 6 34826301 34826301 C T UHRF1BP1 Missense_Mutation p.P723L 0.19 deleterious(0) probably_damaging(0.98) TCGA-DA-A1IA-06 6 35471586 35471586 G A TULP1 Silent p.N384N 0.42 TCGA-DA-A1IA-06 6 37631839 37631839 C T MDGA1 Silent p.V37V 0.39 TCGA-DA-A1IA-06 6 3850385 3850385 A T FAM50B Nonsense_Mutation p.K114* 0.52 TCGA-DA-A1IA-06 6 42893435 42893435 C T PTCRA 3'UTR 0.60 TCGA-DA-A1IA-06 6 43267376 43267376 G T SLC22A7 Missense_Mutation p.R172L 0.43 deleterious(0.04) probably_damaging(0.982) TCGA-DA-A1IA-06 6 46821697 46821697 C T GPR116 3'UTR 0.44 TCGA-DA-A1IA-06 6 74063756 74063756 C T DPPA5 Splice_Site p.X38_splice 0.24 TCGA-DA-A1IA-06 6 97063574 97063574 G A FHL5 Missense_Mutation p.G261S 0.87 deleterious(0.02) probably_damaging(0.914) TCGA-DA-A1IA-06 7 100226912 100226912 C T TFR2 Missense_Mutation p.E452K 0.52 tolerated(0.08) possibly_damaging(0.861) TCGA-DA-A1IA-06 7 100392822 100392822 C T ZAN Silent p.S2618S 0.21 TCGA-DA-A1IA-06 7 100682642 100682642 G A MUC17 Missense_Mutation p.E2649K 0.94 benign(0.001) TCGA-DA-A1IA-06 7 100696390 100696390 C T MUC17 Silent p.L4409L 0.35 TCGA-DA-A1IA-06 7 107399243 107399243 C T CBLL1 Missense_Mutation p.H366Y 0.47 tolerated(0.29) benign(0.019) TCGA-DA-A1IA-06 7 138946272 138946272 C T UBN2 Nonsense_Mutation p.Q394* 0.41 TCGA-DA-A1IA-06 7 142139726 142139726 C T TRBV7-6 Silent p.G15G 0.46 TCGA-DA-A1IA-06 7 142571386 142571386 C T TRPV6 Missense_Mutation p.E535K 0.37 deleterious(0) probably_damaging(0.978) TCGA-DA-A1IA-06 7 142572287 142572287 C T TRPV6 Missense_Mutation p.R470Q 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A1IA-06 7 150737981 150737981 C T ABCB8 Silent p.I485I 0.50 TCGA-DA-A1IA-06 7 151216560 151216560 C T RHEB Missense_Mutation p.G13D 0.56 deleterious(0.02) probably_damaging(0.986) TCGA-DA-A1IA-06 7 151216561 151216561 C T RHEB Missense_Mutation p.G13S 0.53 deleterious(0.01) possibly_damaging(0.733) TCGA-DA-A1IA-06 7 18875586 18875586 C T HDAC9 Missense_Mutation p.P884S 0.50 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IA-06 7 21640510 21640510 C T DNAH11 Missense_Mutation p.P1073S 0.49 benign(0.13) TCGA-DA-A1IA-06 7 21640511 21640511 C T DNAH11 Missense_Mutation p.P1073L 0.50 benign(0.018) TCGA-DA-A1IA-06 7 23293816 23293816 T C GPNMB Silent p.S84S 0.44 TCGA-DA-A1IA-06 7 2748315 2748315 G A AMZ1 Nonsense_Mutation p.W189* 0.54 TCGA-DA-A1IA-06 7 40027485 40027485 C T CDK13 Missense_Mutation p.T500M 0.41 deleterious(0) possibly_damaging(0.7) TCGA-DA-A1IA-06 7 56007168 56007168 C T ZNF713 Silent p.F254F 0.44 TCGA-DA-A1IA-06 7 64292121 64292121 C T ZNF138 Silent p.F141F 0.39 TCGA-DA-A1IA-06 7 888141 888141 C T SUN1 Intron 0.47 TCGA-DA-A1IA-06 7 91631892 91631892 A G AKAP9 Silent p.L887L 0.45 TCGA-DA-A1IA-06 7 94855338 94855338 G A PPP1R9A Missense_Mutation p.M674I 0.44 tolerated(0.09) benign(0.002) TCGA-DA-A1IA-06 7 98535353 98535353 G A TRRAP Silent p.R1438R 0.46 TCGA-DA-A1IA-06 7 98985838 98985838 G A ARPC1B Missense_Mutation p.G116S 0.22 deleterious(0.05) possibly_damaging(0.499) TCGA-DA-A1IA-06 8 110984910 110984910 G A KCNV1 Missense_Mutation p.P190S 0.41 tolerated(0.46) benign(0.19) TCGA-DA-A1IA-06 8 12957028 12957028 C T DLC1 Missense_Mutation p.V940I 0.39 tolerated(0.22) benign(0.026) TCGA-DA-A1IA-06 8 12957029 12957029 C T DLC1 Silent p.S939S 0.38 TCGA-DA-A1IA-06 8 145579875 145579875 C T FBXL6 Splice_Site p.X409_splice 0.58 TCGA-DA-A1IA-06 8 146033000 146033000 C T ZNF517 Silent p.F233F 0.88 TCGA-DA-A1IA-06 8 24813811 24813811 C T CTD-2168K21.2 5'Flank 0.64 TCGA-DA-A1IA-06 8 27880921 27880921 C T NUGGC Silent p.A768A 0.60 TCGA-DA-A1IA-06 8 28210825 28210825 G A ZNF395 Silent p.S228S 0.74 TCGA-DA-A1IA-06 8 31014939 31014939 C T WRN Missense_Mutation p.S1292F 0.60 tolerated(0.71) benign(0.008) TCGA-DA-A1IA-06 8 38099838 38099838 G A DDHD2 Silent p.Q261Q 0.22 TCGA-DA-A1IA-06 8 52733192 52733192 C T PCMTD1 Missense_Mutation p.A265T 0.05 tolerated(0.57) benign(0.003) TCGA-DA-A1IA-06 8 61741297 61741297 G A CHD7 Missense_Mutation p.E1152K 0.70 probably_damaging(0.995) TCGA-DA-A1IA-06 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.62 tolerated(0.51) benign(0.108) TCGA-DA-A1IA-06 8 67062629 67062629 G A TRIM55 Missense_Mutation p.E305K 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-DA-A1IA-06 8 72184058 72184058 C A EYA1 Missense_Mutation p.G301W 0.39 tolerated(0.05) benign(0.019) TCGA-DA-A1IA-06 8 8560185 8560185 C T CLDN23 Silent p.L93L 0.64 TCGA-DA-A1IA-06 8 86244770 86244770 G A CA1 Silent p.A154A 0.64 TCGA-DA-A1IA-06 9 103204520 103204520 C T MSANTD3 Silent p.L100L 0.62 TCGA-DA-A1IA-06 9 104170392 104170392 C T ZNF189 Silent p.F114F 0.47 TCGA-DA-A1IA-06 9 107380042 107380042 G A OR13C9 Silent p.S148S 0.45 TCGA-DA-A1IA-06 9 109687704 109687704 C T ZNF462 Missense_Mutation p.S504F 0.46 possibly_damaging(0.485) TCGA-DA-A1IA-06 9 114173416 114173416 C T KIAA0368 Missense_Mutation p.E919K 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A1IA-06 9 130947959 130947959 G A CIZ1 Missense_Mutation p.P152L 0.32 deleterious(0) possibly_damaging(0.804) TCGA-DA-A1IA-06 9 133355773 133355773 G A ASS1 Missense_Mutation p.G259S 0.46 tolerated(0.2) possibly_damaging(0.801) TCGA-DA-A1IA-06 9 136899829 136899829 G A BRD3 Missense_Mutation p.R687W 0.52 deleterious(0) possibly_damaging(0.523) TCGA-DA-A1IA-06 9 138719360 138719360 G A CAMSAP1 Silent p.F372F 0.32 TCGA-DA-A1IA-06 9 139370859 139370859 G A SEC16A Silent p.F403F 0.26 TCGA-DA-A1IA-06 9 140392598 140392598 C T PNPLA7 Nonsense_Mutation p.W619* 0.40 TCGA-DA-A1IA-06 9 22451559 22451559 G A DMRTA1 Silent p.Q388Q 0.38 TCGA-DA-A1IA-06 9 32541581 32541581 G A TOPORS Missense_Mutation p.T981I 0.35 tolerated_low_confidence(0.14) unknown(0) TCGA-DA-A1IA-06 9 34656778 34656778 C T IL11RA Silent p.L68L 0.54 TCGA-DA-A1IA-06 9 35105312 35105312 G A FAM214B Missense_Mutation p.S508F 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1IA-06 9 37729760 37729760 C T FRMPD1 Silent p.I216I 0.62 TCGA-DA-A1IA-06 9 5123074 5123074 C T JAK2 Silent p.L1044L 0.56 TCGA-DA-A1IA-06 9 74355074 74355074 T C TMEM2 Missense_Mutation p.N370S 0.44 tolerated(0.15) benign(0.254) TCGA-DA-A1IA-06 9 88247611 88247611 C T AGTPBP1 Missense_Mutation p.E621K 0.44 tolerated(0.1) probably_damaging(0.994) TCGA-DA-A1IA-06 X 101620170 101620170 G A NXF2B Missense_Mutation p.P426S 0.37 tolerated(0.09) benign(0.326) TCGA-DA-A1IA-06 X 103349041 103349041 G A SLC25A53 Silent p.S300S 0.45 TCGA-DA-A1IA-06 X 103349042 103349042 G A SLC25A53 Missense_Mutation p.S300F 0.46 deleterious_low_confidence(0.02) benign(0.002) TCGA-DA-A1IA-06 X 105280705 105280705 C T SERPINA7 Silent p.L115L 0.43 TCGA-DA-A1IA-06 X 106069312 106069312 C T TBC1D8B Missense_Mutation p.P294S 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-DA-A1IA-06 X 106069313 106069313 C T TBC1D8B Missense_Mutation p.P294L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IA-06 X 107866029 107866029 G A COL4A5 Missense_Mutation p.G964E 0.47 unknown(0) TCGA-DA-A1IA-06 X 117695392 117695392 C T DOCK11 Missense_Mutation p.S202L 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A1IA-06 X 122778637 122778637 G A THOC2 Nonsense_Mutation p.Q518* 0.42 TCGA-DA-A1IA-06 X 123022525 123022525 C T XIAP Missense_Mutation p.P312S 0.38 tolerated(0.88) possibly_damaging(0.896) TCGA-DA-A1IA-06 X 123022526 123022526 C T XIAP Missense_Mutation p.P312L 0.40 deleterious(0.05) probably_damaging(0.956) TCGA-DA-A1IA-06 X 12734281 12734281 C T FRMPD4 Missense_Mutation p.A568V 0.46 tolerated(0.18) benign(0.003) TCGA-DA-A1IA-06 X 135570356 135570356 C T BRS3 Missense_Mutation p.S28F 0.48 tolerated(0.7) benign(0.003) TCGA-DA-A1IA-06 X 153595894 153595894 T C FLNA Missense_Mutation p.I247V 0.22 deleterious(0) possibly_damaging(0.797) TCGA-DA-A1IA-06 X 18662560 18662560 C T RS1 Missense_Mutation p.G171E 0.35 deleterious(0) probably_damaging(0.941) TCGA-DA-A1IA-06 X 40534569 40534569 T C MED14 Silent p.R975R 0.44 TCGA-DA-A1IA-06 X 47428156 47428156 C T ARAF Silent p.F372F 0.45 TCGA-DA-A1IA-06 X 53285070 53285070 G A IQSEC2 Missense_Mutation p.A304V 0.42 deleterious(0.05) benign(0.037) TCGA-DA-A1IA-06 X 54840822 54840822 G A MAGED2 Intron 0.46 TCGA-DA-A1IA-06 X 77244063 77244063 A G ATP7A Missense_Mutation p.D149G 0.27 tolerated(0.37) benign(0.066) TCGA-DA-A1IA-06 X 79947403 79947403 G A BRWD3 Nonsense_Mutation p.Q1134* 0.60 TCGA-DA-A1IA-06 X 83129299 83129299 C T CYLC1 Missense_Mutation p.S528F 0.35 deleterious(0.03) possibly_damaging(0.468) TCGA-DA-A1IA-06 X 8503632 8503632 G A KAL1 Silent p.S614S 0.25 TCGA-DA-A1IA-06 X 8503633 8503633 G T KAL1 Missense_Mutation p.S614Y 0.24 deleterious(0) benign(0.416) TCGA-DA-A1IA-06 X 96140065 96140065 G A RPA4 Silent p.V252V 0.44 TCGA-DA-A1IB-06 10 115531817 115531817 A C PLEKHS1 Missense_Mutation p.H208P 0.08 deleterious(0.01) possibly_damaging(0.667) TCGA-DA-A1IB-06 14 101004687 101004687 G C BEGAIN Silent p.L467L 0.15 TCGA-DA-A1IB-06 14 63784409 63784411 CCC GCCA GPHB5 RNA 0.17 TCGA-DA-A1IB-06 16 2294426 2294427 - GAGACCAGCACCAGGTTGGACTGGTACAACCT ECI1 Frame_Shift_Ins p.V141Efs*30 0.12 TCGA-DA-A1IB-06 19 1230961 1230961 G - C19orf26 Frame_Shift_Del p.R432Efs*96 0.10 TCGA-DA-A1IB-06 1 151611553 151611553 C - SNX27 Frame_Shift_Del p.R169Dfs*39 0.09 TCGA-DA-A1IB-06 1 215955459 215955459 C A USH2A Missense_Mutation p.E3555D 0.15 benign(0.028) TCGA-DA-A1IB-06 1 228467088 228467088 G - OBSCN Frame_Shift_Del p.V2878Cfs*21 0.12 TCGA-DA-A1IB-06 1 9791831 9791831 G - CLSTN1 Frame_Shift_Del p.H851Tfs*13 0.08 TCGA-DA-A1IB-06 20 62606871 62606871 T - SAMD10 Frame_Shift_Del p.M201Cfs*6 0.09 TCGA-DA-A1IB-06 3 38592533 38592533 A G SCN5A Missense_Mutation p.V1777A 0.08 tolerated(0.1) probably_damaging(0.996) TCGA-DA-A1IB-06 5 134364604 134364604 G T PITX1 Silent p.P270P 0.10 TCGA-DA-A1IB-06 5 35065449 35065449 G T PRLR Silent p.P537P 0.18 TCGA-DA-A1IB-06 6 56044546 56044546 G A COL21A1 Missense_Mutation p.A157V 0.11 deleterious(0.03) possibly_damaging(0.89) TCGA-DA-A1IB-06 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-DA-A1IC-06 10 100195443 100195443 G A HPS1 Silent p.T68T 0.24 TCGA-DA-A1IC-06 10 101476172 101476172 C T COX15 Missense_Mutation p.R345Q 0.34 deleterious(0.02) benign(0.13) TCGA-DA-A1IC-06 10 101911954 101911954 G A ERLIN1 Silent p.L327L 0.40 TCGA-DA-A1IC-06 10 102089680 102089680 C T PKD2L1 Missense_Mutation p.A61T 0.52 tolerated(0.35) benign(0.001) TCGA-DA-A1IC-06 10 102222947 102222947 G A WNT8B Missense_Mutation p.V8M 0.37 tolerated(0.23) benign(0.057) TCGA-DA-A1IC-06 10 102222948 102222948 T C WNT8B Missense_Mutation p.V8A 0.38 tolerated(0.31) benign(0.001) TCGA-DA-A1IC-06 10 104597062 104597062 C T CYP17A1 Silent p.K19K 0.38 TCGA-DA-A1IC-06 10 105005787 105005787 C T RPEL1 Missense_Mutation p.L12F 0.38 deleterious(0) probably_damaging(0.929) TCGA-DA-A1IC-06 10 105484080 105484080 C T SH3PXD2A Missense_Mutation p.E116K 0.46 deleterious(0) probably_damaging(0.951) TCGA-DA-A1IC-06 10 108434807 108434807 G A SORCS1 Missense_Mutation p.T647I 0.31 deleterious(0.01) possibly_damaging(0.66) TCGA-DA-A1IC-06 10 112769567 112769567 A T SHOC2 Missense_Mutation p.T507S 0.22 tolerated(0.5) benign(0.217) TCGA-DA-A1IC-06 10 115349449 115349449 C T NRAP Silent p.R1688R 0.35 TCGA-DA-A1IC-06 10 115349450 115349450 C T NRAP Missense_Mutation p.R1688K 0.35 tolerated(0.77) benign(0.129) TCGA-DA-A1IC-06 10 115411667 115411667 C T NRAP Splice_Site p.X191_splice 0.44 TCGA-DA-A1IC-06 10 115594782 115594782 G A DCLRE1A 3'UTR 0.55 TCGA-DA-A1IC-06 10 117309040 117309040 G A ATRNL1 Silent p.R1263R 0.35 TCGA-DA-A1IC-06 10 122273420 122273420 C T PPAPDC1A Intron 0.37 TCGA-DA-A1IC-06 10 122665387 122665387 G A WDR11 Splice_Site p.X1098_splice 0.31 TCGA-DA-A1IC-06 10 122665388 122665388 G A WDR11 Missense_Mutation p.V1098I 0.31 tolerated(0.06) benign(0.066) TCGA-DA-A1IC-06 10 123843781 123843781 G A TACC2 Missense_Mutation p.G589E 0.24 benign(0.047) TCGA-DA-A1IC-06 10 124402818 124402818 G A DMBT1 Silent p.S2382S 0.42 TCGA-DA-A1IC-06 10 124459310 124459310 C T C10orf120 5'UTR 0.31 TCGA-DA-A1IC-06 10 129216633 129216633 A C DOCK1 Missense_Mutation p.E1486A 0.29 tolerated(0.1) possibly_damaging(0.874) TCGA-DA-A1IC-06 10 131755553 131755553 C T EBF3 Missense_Mutation p.E175K 0.36 deleterious(0) probably_damaging(0.993) TCGA-DA-A1IC-06 10 134147046 134147046 C T LRRC27 Silent p.S6S 0.36 TCGA-DA-A1IC-06 10 134942560 134942560 G A GPR123 Missense_Mutation p.D410N 0.27 tolerated(0.97) benign(0.004) TCGA-DA-A1IC-06 10 134999848 134999848 C T KNDC1 Silent p.P332P 0.20 TCGA-DA-A1IC-06 10 15151122 15151122 G A NMT2 3'UTR 0.34 TCGA-DA-A1IC-06 10 17088024 17088024 G A CUBN Silent p.I1133I 0.39 TCGA-DA-A1IC-06 10 20357116 20357116 C T PLXDC2 Silent p.F163F 0.34 TCGA-DA-A1IC-06 10 21804515 21804515 G A SKIDA1 Missense_Mutation p.P746L 0.38 deleterious(0.02) unknown(0) TCGA-DA-A1IC-06 10 21804516 21804516 G A SKIDA1 Missense_Mutation p.P746S 0.38 tolerated(0.43) unknown(0) TCGA-DA-A1IC-06 10 23481535 23481535 T A PTF1A Missense_Mutation p.F26I 0.38 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-DA-A1IC-06 10 23481536 23481536 T C PTF1A Missense_Mutation p.F26S 0.38 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-DA-A1IC-06 10 25886964 25886964 G A GPR158 Silent p.K803K 0.34 TCGA-DA-A1IC-06 10 25886965 25886965 G A GPR158 Missense_Mutation p.E804K 0.34 tolerated(0.1) benign(0.254) TCGA-DA-A1IC-06 10 26432494 26432494 A G MYO3A Missense_Mutation p.S794G 0.45 deleterious(0) possibly_damaging(0.524) TCGA-DA-A1IC-06 10 26849066 26849066 C T APBB1IP Silent p.I396I 0.40 TCGA-DA-A1IC-06 10 28378660 28378660 C T MPP7 Missense_Mutation p.E355K 0.38 tolerated(0.05) probably_damaging(0.997) TCGA-DA-A1IC-06 10 28413985 28413985 C T MPP7 Silent p.A161A 0.38 TCGA-DA-A1IC-06 10 30316433 30316433 G A KIAA1462 Missense_Mutation p.R882C 0.39 tolerated(0.1) benign(0.006) TCGA-DA-A1IC-06 10 37414846 37414846 A G ANKRD30A 5'UTR 0.15 TCGA-DA-A1IC-06 10 37430749 37430749 C T ANKRD30A Silent p.P252P 0.37 TCGA-DA-A1IC-06 10 38651210 38651210 G A HSD17B7P2 RNA 0.26 TCGA-DA-A1IC-06 10 47747120 47747120 G A ANXA8L2 Nonsense_Mutation p.W3* 0.43 TCGA-DA-A1IC-06 10 48370805 48370805 G A ZNF488 Silent p.P91P 0.52 TCGA-DA-A1IC-06 10 52002997 52002997 C T ASAH2 Missense_Mutation p.D159N 0.31 deleterious(0.02) possibly_damaging(0.577) TCGA-DA-A1IC-06 10 6066298 6066298 T C IL2RA Silent p.K92K 0.30 TCGA-DA-A1IC-06 10 62648351 62648351 G A RHOBTB1 Silent p.L359L 0.33 TCGA-DA-A1IC-06 10 63819004 63819004 A T ARID5B Missense_Mutation p.N351Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 10 70441225 70441225 C T TET1 Missense_Mutation p.P1632S 0.41 deleterious(0) probably_damaging(0.976) TCGA-DA-A1IC-06 10 71332526 71332526 C T NEUROG3 Missense_Mutation p.E92K 0.34 deleterious(0) probably_damaging(0.981) TCGA-DA-A1IC-06 10 71874719 71874719 G A AIFM2 Silent p.I309I 0.43 TCGA-DA-A1IC-06 10 71903629 71903629 G A TYSND1 Silent p.P422P 0.32 TCGA-DA-A1IC-06 10 72462131 72462131 G A ADAMTS14 Missense_Mutation p.E196K 0.44 tolerated(0.1) benign(0.033) TCGA-DA-A1IC-06 10 73521670 73521672 CAT - C10orf54 In_Frame_Del p.D65del 0.57 TCGA-DA-A1IC-06 10 73545396 73545396 C T CDH23 Silent p.I1912I 0.25 TCGA-DA-A1IC-06 10 73588778 73588778 G A PSAP Silent p.H144H 0.30 TCGA-DA-A1IC-06 10 7621865 7621865 C T ITIH5 Missense_Mutation p.R424Q 0.27 tolerated(0.13) benign(0.092) TCGA-DA-A1IC-06 10 76735652 76735652 C T KAT6B Silent p.P519P 0.40 TCGA-DA-A1IC-06 10 79570962 79570962 G A DLG5 Silent p.S1451S 0.25 TCGA-DA-A1IC-06 10 79590511 79590511 G A DLG5 Silent p.F623F 0.35 TCGA-DA-A1IC-06 10 8007004 8007004 G C TAF3 Missense_Mutation p.E511Q 0.41 deleterious(0) possibly_damaging(0.628) TCGA-DA-A1IC-06 10 82271930 82271930 G T TSPAN14 Missense_Mutation p.D161Y 0.38 deleterious(0.02) probably_damaging(0.972) TCGA-DA-A1IC-06 10 85982030 85982030 G A LRIT2 Silent p.L433L 0.36 TCGA-DA-A1IC-06 10 88218804 88218804 C T WAPAL Missense_Mutation p.E867K 0.34 deleterious(0) benign(0.424) TCGA-DA-A1IC-06 10 88414668 88414668 C T OPN4 Missense_Mutation p.P43L 0.49 tolerated(0.48) benign(0.002) TCGA-DA-A1IC-06 10 95394530 95394530 G A PDE6C Missense_Mutation p.E379K 0.36 deleterious(0.04) possibly_damaging(0.801) TCGA-DA-A1IC-06 10 96745900 96745900 G A CYP2C9 Silent p.K420K 0.46 TCGA-DA-A1IC-06 10 97096832 97096832 G A SORBS1 Missense_Mutation p.P1029S 0.32 tolerated_low_confidence(0.05) benign(0.006) TCGA-DA-A1IC-06 10 97816742 97816742 G A CCNJ Missense_Mutation p.E189K 0.29 deleterious(0) possibly_damaging(0.853) TCGA-DA-A1IC-06 10 98742449 98742449 C T C10orf12 Silent p.D434D 0.36 TCGA-DA-A1IC-06 11 101340233 101340233 C T TRPC6 Splice_Site p.X804_splice 0.88 TCGA-DA-A1IC-06 11 103797677 103797677 G A PDGFD Missense_Mutation p.T317I 0.82 deleterious(0.03) benign(0.13) TCGA-DA-A1IC-06 11 117077812 117077812 C T PCSK7 Nonsense_Mutation p.W617* 0.41 TCGA-DA-A1IC-06 11 117342748 117342748 G A DSCAML1 Missense_Mutation p.S990F 0.78 deleterious(0) possibly_damaging(0.739) TCGA-DA-A1IC-06 11 118211302 118211302 G A CD3D Missense_Mutation p.P21L 0.59 tolerated(0.8) benign(0.048) TCGA-DA-A1IC-06 11 118965670 118965670 C T H2AFX 3'UTR 0.73 TCGA-DA-A1IC-06 11 119148871 119148874 CAAA - CBL Splice_Site p.X366_splice 0.86 TCGA-DA-A1IC-06 11 124293956 124293956 C T OR8B4 Missense_Mutation p.R271K 0.88 tolerated_low_confidence(1) benign(0.001) TCGA-DA-A1IC-06 11 124481516 124481516 G A PANX3 Missense_Mutation p.G22R 0.78 tolerated(0.28) probably_damaging(0.999) TCGA-DA-A1IC-06 11 124481517 124481517 G A PANX3 Missense_Mutation p.G22E 0.77 tolerated(1) probably_damaging(0.999) TCGA-DA-A1IC-06 11 124481543 124481543 G A PANX3 Missense_Mutation p.E31K 0.73 deleterious(0) probably_damaging(0.986) TCGA-DA-A1IC-06 11 125791205 125791205 A G DDX25 Missense_Mutation p.K441E 0.88 tolerated(0.1) benign(0.44) TCGA-DA-A1IC-06 11 130781576 130781576 G A SNX19 Silent p.L589L 0.74 TCGA-DA-A1IC-06 11 1619092 1619092 G A KRTAP5-2 Missense_Mutation p.S130L 0.79 tolerated_low_confidence(0.06) unknown(0) TCGA-DA-A1IC-06 11 18793592 18793592 G A PTPN5 5'UTR 0.58 TCGA-DA-A1IC-06 11 193724 193724 G A SCGB1C1 Missense_Mutation p.G23E 0.17 deleterious(0.01) benign(0.36) TCGA-DA-A1IC-06 11 194532 194532 G A SCGB1C1 3'UTR 0.19 TCGA-DA-A1IC-06 11 26705386 26705386 G A SLC5A12 Missense_Mutation p.S409F 0.36 deleterious(0) possibly_damaging(0.639) TCGA-DA-A1IC-06 11 31115680 31115680 A T DCDC1 Missense_Mutation p.F679I 0.74 tolerated(0.13) benign(0.051) TCGA-DA-A1IC-06 11 3381777 3381777 G A ZNF195 Missense_Mutation p.T154I 0.69 tolerated(0.14) probably_damaging(0.969) TCGA-DA-A1IC-06 11 4608286 4608286 G A OR52I2 Missense_Mutation p.D82N 0.70 deleterious(0.04) benign(0.309) TCGA-DA-A1IC-06 11 4791139 4791139 G A OR51F1 Silent p.I3I 0.82 TCGA-DA-A1IC-06 11 5537114 5537114 G A UBQLNL Silent p.S186S 0.69 TCGA-DA-A1IC-06 11 5776682 5776682 A T OR52N4 Nonsense_Mutation p.K238* 0.72 TCGA-DA-A1IC-06 11 58206830 58206830 G A OR5B12 Silent p.F265F 0.84 TCGA-DA-A1IC-06 11 58478113 58478113 G A GLYAT Silent p.F146F 0.78 TCGA-DA-A1IC-06 11 60702137 60702137 C T TMEM132A Silent p.H580H 0.85 TCGA-DA-A1IC-06 11 609256 609256 C T PHRF1 Missense_Mutation p.A1266V 0.69 tolerated(0.33) possibly_damaging(0.866) TCGA-DA-A1IC-06 11 609257 609257 C T PHRF1 Silent p.A1266A 0.68 TCGA-DA-A1IC-06 11 61912749 61912749 G A INCENP Silent p.E608E 0.74 TCGA-DA-A1IC-06 11 62065005 62065005 C T SCGB1D4 Missense_Mutation p.E61K 0.79 tolerated(0.16) benign(0.008) TCGA-DA-A1IC-06 11 62299867 62299867 C T AHNAK Silent p.E674E 0.75 TCGA-DA-A1IC-06 11 63149655 63149655 G A SLC22A9 Missense_Mutation p.E327K 0.77 deleterious(0) possibly_damaging(0.893) TCGA-DA-A1IC-06 11 63396854 63396854 G A ATL3 Silent p.S521S 0.62 TCGA-DA-A1IC-06 11 63396855 63396855 G A ATL3 Missense_Mutation p.S521F 0.59 deleterious(0.05) benign(0.424) TCGA-DA-A1IC-06 11 64664943 64664943 G A ATG2A Silent p.I1697I 0.64 TCGA-DA-A1IC-06 11 64669618 64669618 G A ATG2A Missense_Mutation p.S1312F 0.76 deleterious(0) possibly_damaging(0.861) TCGA-DA-A1IC-06 11 65004342 65004342 C T SLC22A20 RNA 0.76 TCGA-DA-A1IC-06 11 69456187 69456187 G A CCND1 Missense_Mutation p.E36K 0.73 deleterious(0.04) possibly_damaging(0.633) TCGA-DA-A1IC-06 11 74013507 74013507 G A P4HA3 Silent p.V158V 0.76 TCGA-DA-A1IC-06 11 7949784 7949784 C T OR10A6 Missense_Mutation p.M142I 0.75 tolerated(0.59) benign(0.004) TCGA-DA-A1IC-06 11 7981691 7981691 C T NLRP10 Missense_Mutation p.E490K 0.75 tolerated(0.54) benign(0.025) TCGA-DA-A1IC-06 11 88301112 88301112 G A GRM5 Missense_Mutation p.P580L 0.77 tolerated(0.1) probably_damaging(0.999) TCGA-DA-A1IC-06 11 88911295 88911295 C T TYR Silent p.I58I 0.83 TCGA-DA-A1IC-06 11 88911296 88911296 C T TYR Missense_Mutation p.L59F 0.83 tolerated(0.15) benign(0.002) TCGA-DA-A1IC-06 11 92086011 92086011 G A FAT3 Missense_Mutation p.G245R 0.77 probably_damaging(1) TCGA-DA-A1IC-06 11 92086820 92086820 G A FAT3 Silent p.L514L 0.74 TCGA-DA-A1IC-06 11 92086872 92086872 G A FAT3 Missense_Mutation p.E532K 0.73 benign(0.008) TCGA-DA-A1IC-06 11 9519272 9519272 C T ZNF143 Missense_Mutation p.R298W 0.78 deleterious(0) possibly_damaging(0.806) TCGA-DA-A1IC-06 12 101493412 101493412 G A ANO4 Missense_Mutation p.R653K 0.39 tolerated(0.98) benign(0.001) TCGA-DA-A1IC-06 12 101551071 101551071 C T SLC5A8 Missense_Mutation p.G607R 0.37 deleterious(0) benign(0.157) TCGA-DA-A1IC-06 12 102023306 102023306 A T MYBPC1 Silent p.G66G 0.33 TCGA-DA-A1IC-06 12 102811465 102811465 C T IGF1 3'UTR 0.36 TCGA-DA-A1IC-06 12 104015856 104015856 G A STAB2 Missense_Mutation p.D152N 0.29 tolerated(0.21) benign(0.004) TCGA-DA-A1IC-06 12 109294246 109294246 G A DAO Missense_Mutation p.A327T 0.38 tolerated(0.15) benign(0.277) TCGA-DA-A1IC-06 12 10962106 10962106 G A TAS2R9 Missense_Mutation p.P190L 0.29 tolerated(0.18) probably_damaging(0.999) TCGA-DA-A1IC-06 12 110495058 110495058 G A C12orf76 Missense_Mutation p.P79S 0.27 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-DA-A1IC-06 12 110783854 110783854 C T ATP2A2 Silent p.I930I 0.32 TCGA-DA-A1IC-06 12 111786114 111786114 G A CUX2 Silent p.L1482L 0.43 TCGA-DA-A1IC-06 12 112280598 112280598 C T MAPKAPK5 Intron 0.64 TCGA-DA-A1IC-06 12 113266161 113266161 G A RPH3A Nonsense_Mutation p.W13* 0.39 TCGA-DA-A1IC-06 12 113266162 113266162 G A RPH3A Nonsense_Mutation p.W13* 0.40 TCGA-DA-A1IC-06 12 114404107 114404107 G A RBM19 5'UTR 0.33 TCGA-DA-A1IC-06 12 120173010 120173010 G A CIT Silent p.R1037R 0.36 TCGA-DA-A1IC-06 12 121437150 121437150 C T HNF1A Silent p.T527T 0.21 TCGA-DA-A1IC-06 12 121660807 121660807 C G P2RX4 Missense_Mutation p.A178G 0.21 deleterious(0.02) possibly_damaging(0.71) TCGA-DA-A1IC-06 12 121880145 121880145 G A KDM2B Silent p.P1033P 0.14 TCGA-DA-A1IC-06 12 123444367 123444367 G A ABCB9 Missense_Mutation p.T139I 0.32 tolerated(0.14) benign(0.002) TCGA-DA-A1IC-06 12 123815827 123815827 G A SBNO1 Silent p.I335I 0.43 TCGA-DA-A1IC-06 12 124171515 124171515 C T TCTN2 Missense_Mutation p.P233S 0.24 deleterious(0.03) benign(0.395) TCGA-DA-A1IC-06 12 125834048 125834048 C T TMEM132B Missense_Mutation p.P35S 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-DA-A1IC-06 12 130184679 130184679 G A TMEM132D Missense_Mutation p.S215F 0.60 tolerated(0.06) benign(0.002) TCGA-DA-A1IC-06 12 13526360 13526360 C T C12orf36 Silent p.G65G 0.46 TCGA-DA-A1IC-06 12 14829847 14829847 G A GUCY2C Silent p.L297L 0.32 TCGA-DA-A1IC-06 12 18435596 18435596 G A PIK3C2G Missense_Mutation p.R194K 0.42 tolerated(0.31) benign(0.003) TCGA-DA-A1IC-06 12 18716344 18716344 G A PIK3C2G Missense_Mutation p.E1231K 0.28 tolerated(0.13) benign(0.008) TCGA-DA-A1IC-06 12 20868209 20868209 T C SLCO1C1 Silent p.A222A 0.29 TCGA-DA-A1IC-06 12 21032415 21032415 G A SLCO1B3 Missense_Mutation p.G394E 0.32 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 12 21036398 21036398 G A SLCO1B3 Missense_Mutation p.R515K 0.27 tolerated(0.88) benign(0.004) TCGA-DA-A1IC-06 12 21327576 21327576 G A SLCO1B1 Missense_Mutation p.G98R 0.43 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 12 22001175 22001175 C T ABCC9 Missense_Mutation p.M925I 0.39 tolerated(0.75) benign(0) TCGA-DA-A1IC-06 12 250570 250570 A G IQSEC3 Intron 0.50 TCGA-DA-A1IC-06 12 2930439 2930439 C T ITFG2 Missense_Mutation p.A236V 0.44 tolerated(0.2) benign(0.059) TCGA-DA-A1IC-06 12 3018744 3018744 C T TULP3 Nonsense_Mutation p.Q31* 0.29 TCGA-DA-A1IC-06 12 31586121 31586121 C T DENND5B Missense_Mutation p.E692K 0.25 tolerated(0.11) possibly_damaging(0.484) TCGA-DA-A1IC-06 12 333250 333250 G A SLC6A13 Missense_Mutation p.P407S 0.31 deleterious(0) probably_damaging(0.996) TCGA-DA-A1IC-06 12 368935 368935 C T SLC6A13 Intron 0.52 TCGA-DA-A1IC-06 12 41302173 41302173 C T CNTN1 5'UTR 0.20 TCGA-DA-A1IC-06 12 41422941 41422941 C T CNTN1 Missense_Mutation p.P967L 0.41 deleterious(0.04) benign(0.247) TCGA-DA-A1IC-06 12 41966225 41966225 C T PDZRN4 Silent p.N548N 0.36 TCGA-DA-A1IC-06 12 43826141 43826141 G A ADAMTS20 Missense_Mutation p.S1021F 0.35 deleterious(0.04) possibly_damaging(0.861) TCGA-DA-A1IC-06 12 46245027 46245027 C T ARID2 Nonsense_Mutation p.Q1041* 0.43 TCGA-DA-A1IC-06 12 46246254 46246254 G - ARID2 Frame_Shift_Del p.G1450Dfs*3 0.25 TCGA-DA-A1IC-06 12 47181798 47181798 G A SLC38A4 Missense_Mutation p.S76F 0.43 deleterious(0) possibly_damaging(0.89) TCGA-DA-A1IC-06 12 48181866 48181866 C T HDAC7 Missense_Mutation p.D773N 0.44 tolerated(0.07) benign(0.008) TCGA-DA-A1IC-06 12 49391080 49391080 G A DDN Missense_Mutation p.R527C 0.27 tolerated_low_confidence(0.17) benign(0.311) TCGA-DA-A1IC-06 12 50025214 50025214 C T PRPF40B Missense_Mutation p.P39S 0.43 tolerated_low_confidence(0.16) unknown(0) TCGA-DA-A1IC-06 12 50501360 50501360 C T GPD1 Missense_Mutation p.A208V 0.34 deleterious(0) probably_damaging(0.992) TCGA-DA-A1IC-06 12 50571449 50571449 C T LIMA1 Missense_Mutation p.D561N 0.33 deleterious(0.01) benign(0.41) TCGA-DA-A1IC-06 12 51458120 51458120 G T CSRNP2 Silent p.A347A 0.37 TCGA-DA-A1IC-06 12 51458139 51458139 T C CSRNP2 Missense_Mutation p.D341G 0.35 tolerated(0.26) benign(0.337) TCGA-DA-A1IC-06 12 52844254 52844254 C T KRT6B Missense_Mutation p.E231K 0.26 deleterious(0.02) benign(0.377) TCGA-DA-A1IC-06 12 52881598 52881598 G A KRT6A Missense_Mutation p.A534V 0.39 tolerated(0.36) unknown(0) TCGA-DA-A1IC-06 12 53170560 53170560 G A KRT76 Silent p.I172I 0.39 TCGA-DA-A1IC-06 12 53565255 53565255 G A CSAD Intron 0.29 TCGA-DA-A1IC-06 12 53594079 53594079 G A ITGB7 Missense_Mutation p.S50F 0.41 deleterious(0) probably_damaging(0.962) TCGA-DA-A1IC-06 12 54971213 54971213 G A PPP1R1A 3'Flank 0.04 TCGA-DA-A1IC-06 12 55688381 55688381 C T OR6C6 Silent p.V212V 0.33 TCGA-DA-A1IC-06 12 56822755 56822755 G A TIMELESS Missense_Mutation p.R406C 0.30 deleterious(0) possibly_damaging(0.696) TCGA-DA-A1IC-06 12 57348713 57348713 C T RDH16 Silent p.V183V 0.39 TCGA-DA-A1IC-06 12 57493858 57493858 G A STAT6 Missense_Mutation p.R510C 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 12 57499067 57499067 G A STAT6 Nonsense_Mutation p.Q290* 0.39 TCGA-DA-A1IC-06 12 57499068 57499068 G A STAT6 Silent p.F289F 0.39 TCGA-DA-A1IC-06 12 57550673 57550673 A G LRP1 Missense_Mutation p.S511G 0.41 possibly_damaging(0.779) TCGA-DA-A1IC-06 12 64664335 64664335 T C C12orf56 Missense_Mutation p.N422D 0.42 tolerated(1) benign(0.002) TCGA-DA-A1IC-06 12 6566747 6566747 G A TAPBPL Silent p.Q247Q 0.23 TCGA-DA-A1IC-06 12 65720645 65720645 C T MSRB3 Missense_Mutation p.S46F 0.33 deleterious(0) probably_damaging(0.927) TCGA-DA-A1IC-06 12 662863 662863 G A B4GALNT3 Missense_Mutation p.E592K 0.41 tolerated(0.14) benign(0.004) TCGA-DA-A1IC-06 12 66605263 66605263 C T IRAK3 Silent p.I158I 0.29 TCGA-DA-A1IC-06 12 6702774 6702774 G A CHD4 Silent p.S774S 0.31 TCGA-DA-A1IC-06 12 6761532 6761532 C T ING4 Missense_Mutation p.D185N 0.31 deleterious(0.05) benign(0.209) TCGA-DA-A1IC-06 12 7173252 7173252 G A C1S Nonsense_Mutation p.W283* 0.36 TCGA-DA-A1IC-06 12 7188163 7188163 C T C1R Silent p.G545G 0.39 TCGA-DA-A1IC-06 12 7188164 7188164 C T C1R Missense_Mutation p.G545E 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 12 72057130 72057130 T C ZFC3H1 Silent p.S87S 0.34 TCGA-DA-A1IC-06 12 72266708 72266708 G A TBC1D15 Splice_Site p.X44_splice 0.38 TCGA-DA-A1IC-06 12 73046126 73046126 C T TRHDE Silent p.I855I 0.31 TCGA-DA-A1IC-06 12 80203599 80203599 G A PPP1R12A Silent p.S477S 0.32 TCGA-DA-A1IC-06 12 80770955 80770955 G A OTOGL Silent p.R2269R 0.35 TCGA-DA-A1IC-06 12 8329731 8329731 C T ZNF705A Missense_Mutation p.S152F 0.41 tolerated(0.71) benign(0.099) TCGA-DA-A1IC-06 12 85449863 85449863 C T LRRIQ1 Missense_Mutation p.S431L 0.36 tolerated(0.41) benign(0.004) TCGA-DA-A1IC-06 12 8995903 8995903 T A A2ML1 Nonsense_Mutation p.Y474* 0.43 TCGA-DA-A1IC-06 12 89998001 89998001 G A ATP2B1 Silent p.F855F 0.33 TCGA-DA-A1IC-06 12 91545483 91545483 T C DCN Missense_Mutation p.N278S 0.38 deleterious(0.02) benign(0.064) TCGA-DA-A1IC-06 12 94975610 94975610 C T TMCC3 Silent p.T261T 0.41 TCGA-DA-A1IC-06 12 97311490 97311490 C T NEDD1 Missense_Mutation p.S115L 0.32 tolerated(0.11) benign(0.143) TCGA-DA-A1IC-06 13 114535796 114535796 G A GAS6 Intron 0.79 TCGA-DA-A1IC-06 13 114773066 114773066 G A RASA3 Missense_Mutation p.S562L 0.68 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A1IC-06 13 23912516 23912516 G A SACS Silent p.S1833S 0.54 TCGA-DA-A1IC-06 13 28771364 28771364 C T PAN3 Missense_Mutation p.P245S 0.65 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-DA-A1IC-06 13 29287443 29287443 G A SLC46A3 Missense_Mutation p.T145I 0.45 tolerated(0.06) possibly_damaging(0.805) TCGA-DA-A1IC-06 13 32760500 32760500 G A FRY Silent p.L1141L 0.55 TCGA-DA-A1IC-06 13 32760501 32760501 G A FRY Missense_Mutation p.D1142N 0.55 deleterious(0.04) probably_damaging(0.994) TCGA-DA-A1IC-06 13 77655567 77655567 G A MYCBP2 Missense_Mutation p.L3767F 0.68 possibly_damaging(0.462) TCGA-DA-A1IC-06 13 97484834 97484834 C T HS6ST3 Silent p.T266T 0.32 TCGA-DA-A1IC-06 13 99907627 99907627 G A GPR18 Missense_Mutation p.S167F 0.65 deleterious(0.02) benign(0.056) TCGA-DA-A1IC-06 14 102482416 102482416 A T DYNC1H1 Missense_Mutation p.Y2489F 0.40 benign(0.386) TCGA-DA-A1IC-06 14 102482417 102482417 C T DYNC1H1 Silent p.Y2489Y 0.45 TCGA-DA-A1IC-06 14 105241449 105241449 G A AKT1 Silent p.A177A 0.26 TCGA-DA-A1IC-06 14 106110225 106110225 C T IGHG2 Missense_Mutation p.M131I 0.40 tolerated(0.11) benign(0.161) TCGA-DA-A1IC-06 14 106610537 106610537 C T IGHV3-15 Missense_Mutation p.G45R 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A1IC-06 14 106993982 106993982 C T IGHV3-48 Silent p.G61G 0.37 TCGA-DA-A1IC-06 14 107048691 107048691 G A IGHV3-53 Missense_Mutation p.A110V 0.42 deleterious_low_confidence(0.01) benign(0.404) TCGA-DA-A1IC-06 14 19563583 19563583 G A POTEG Intron 0.28 TCGA-DA-A1IC-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.30 deleterious(0.01) benign(0.048) TCGA-DA-A1IC-06 14 20344738 20344738 C T OR4K2 Silent p.L104L 0.35 TCGA-DA-A1IC-06 14 20404152 20404152 G A OR4K1 Silent p.G109G 0.31 TCGA-DA-A1IC-06 14 20846647 20846647 G A TEP1 Silent p.P1800P 0.26 TCGA-DA-A1IC-06 14 21424565 21424565 G A RNASE2 3'UTR 0.36 TCGA-DA-A1IC-06 14 21499185 21499185 G A TPPP2 Missense_Mutation p.R63Q 0.39 tolerated(0.07) possibly_damaging(0.752) TCGA-DA-A1IC-06 14 21793412 21793412 G A RPGRIP1 Missense_Mutation p.G746E 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 14 21993392 21993392 G A SALL2 Missense_Mutation p.T157I 0.48 tolerated(0.46) benign(0.19) TCGA-DA-A1IC-06 14 22363194 22363194 T C TRAV8-4 Missense_Mutation p.F109L 0.48 deleterious(0.01) probably_damaging(0.985) TCGA-DA-A1IC-06 14 23001499 23001499 C T TRAJ11 Silent p.L17L 0.35 TCGA-DA-A1IC-06 14 23528352 23528352 C T ACIN1 3'UTR 0.35 TCGA-DA-A1IC-06 14 23745327 23745327 G A HOMEZ Silent p.I370I 0.35 TCGA-DA-A1IC-06 14 23863359 23863359 G A MYH6 Missense_Mutation p.S868F 0.51 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 14 23894188 23894188 C T MYH7 Silent p.G823G 0.28 TCGA-DA-A1IC-06 14 24546586 24546586 G A CPNE6 Missense_Mutation p.R508Q 0.37 deleterious(0.03) probably_damaging(0.992) TCGA-DA-A1IC-06 14 24766036 24766036 C T DHRS1 Missense_Mutation p.E68K 0.33 tolerated(0.08) possibly_damaging(0.579) TCGA-DA-A1IC-06 14 24884172 24884172 G A NYNRIN Missense_Mutation p.A1073T 0.33 tolerated(0.13) benign(0.008) TCGA-DA-A1IC-06 14 28734291 28734291 G A BNIP3P1 RNA 0.43 TCGA-DA-A1IC-06 14 35222877 35222877 G A BAZ1A Missense_Mutation p.S1503L 0.17 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IC-06 14 44975203 44975203 G A FSCB Missense_Mutation p.P330S 0.33 tolerated(0.2) possibly_damaging(0.827) TCGA-DA-A1IC-06 14 51378932 51378932 C G PYGL Missense_Mutation p.R570S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IC-06 14 53347814 53347814 C T FERMT2 Silent p.K265K 0.52 TCGA-DA-A1IC-06 14 63784459 63784459 G A GPHB5 RNA 0.25 TCGA-DA-A1IC-06 14 65260452 65260452 G A SPTB Silent p.F643F 0.29 TCGA-DA-A1IC-06 14 69341639 69341639 G A ACTN1 Silent p.S894S 0.31 TCGA-DA-A1IC-06 14 70712868 70712868 G A ADAM21P1 RNA 0.42 TCGA-DA-A1IC-06 14 70925726 70925726 C T ADAM21 Nonsense_Mutation p.Q504* 0.09 TCGA-DA-A1IC-06 14 73733306 73733306 G A PAPLN Missense_Mutation p.D1094N 0.38 deleterious(0.01) benign(0.238) TCGA-DA-A1IC-06 14 74193623 74193623 G A ELMSAN1 Missense_Mutation p.R739C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IC-06 14 75329969 75329969 C T PROX2 Missense_Mutation p.G190D 0.27 tolerated(0.26) benign(0.011) TCGA-DA-A1IC-06 14 77948836 77948836 C T ISM2 Missense_Mutation p.E268K 0.48 tolerated(0.09) possibly_damaging(0.636) TCGA-DA-A1IC-06 14 91772235 91772235 C T CCDC88C Silent p.K1077K 0.32 TCGA-DA-A1IC-06 14 92047331 92047331 G A CATSPERB Missense_Mutation p.P1085S 0.26 deleterious(0.05) benign(0.26) TCGA-DA-A1IC-06 14 92336646 92336646 G A FBLN5 Silent p.I423I 0.35 TCGA-DA-A1IC-06 14 96129986 96129986 C T TCL6 RNA 0.37 TCGA-DA-A1IC-06 15 102359075 102359075 C T OR4F15 Missense_Mutation p.S229F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-DA-A1IC-06 15 22960808 22960808 C T CYFIP1 Silent p.S667S 0.25 TCGA-DA-A1IC-06 15 25223433 25223433 C T SNRPN Missense_Mutation p.P218L 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A1IC-06 15 25449569 25449569 G A SNORD115-19 RNA 0.31 TCGA-DA-A1IC-06 15 29346605 29346605 C T APBA2 Missense_Mutation p.S173F 0.27 deleterious_low_confidence(0) benign(0.372) TCGA-DA-A1IC-06 15 31776364 31776364 G A OTUD7A Silent p.A638A 0.15 TCGA-DA-A1IC-06 15 31776365 31776365 G A OTUD7A Missense_Mutation p.A638V 0.15 tolerated(0.14) probably_damaging(0.989) TCGA-DA-A1IC-06 15 34396489 34396489 A G PGBD4 Silent p.%3D 0.34 TCGA-DA-A1IC-06 15 40675049 40675049 G A KNSTRN Missense_Mutation p.E5K 0.43 tolerated_low_confidence(1) benign(0.002) TCGA-DA-A1IC-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.44 deleterious_low_confidence(0.01) benign(0.118) TCGA-DA-A1IC-06 15 40758311 40758311 C T BAHD1 Silent p.I775I 0.32 TCGA-DA-A1IC-06 15 41136736 41136736 C T SPINT1 5'UTR 0.20 TCGA-DA-A1IC-06 15 41145988 41145988 C T SPINT1 Silent p.I274I 0.40 TCGA-DA-A1IC-06 15 41680721 41680721 C T NDUFAF1 Splice_Site p.X254_splice 0.24 TCGA-DA-A1IC-06 15 41815067 41815067 G A RPAP1 Missense_Mutation p.P880S 0.41 tolerated(0.15) possibly_damaging(0.84) TCGA-DA-A1IC-06 15 42178457 42178457 C T SPTBN5 Silent p.R332R 0.24 TCGA-DA-A1IC-06 15 42434869 42434869 G A PLA2G4F Missense_Mutation p.P729L 0.36 tolerated(0.15) probably_damaging(0.977) TCGA-DA-A1IC-06 15 43748789 43748789 G A TP53BP1 Missense_Mutation p.P673S 0.41 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IC-06 15 45396185 45396185 G A DUOX2 Missense_Mutation p.S876F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 15 49882096 49882096 C T FAM227B Missense_Mutation p.E72K 0.42 tolerated(0.83) benign(0.007) TCGA-DA-A1IC-06 15 50905939 50905939 G A TRPM7 Missense_Mutation p.H579Y 0.50 tolerated(0.12) probably_damaging(0.986) TCGA-DA-A1IC-06 15 51350476 51350476 C T TNFAIP8L3 Missense_Mutation p.E161K 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-DA-A1IC-06 15 51829948 51829948 G A DMXL2 Silent p.L452L 0.21 TCGA-DA-A1IC-06 15 54914599 54914599 C T UNC13C Missense_Mutation p.H2061Y 0.32 tolerated_low_confidence(0.07) benign(0.005) TCGA-DA-A1IC-06 15 59009855 59009855 G A ADAM10 Missense_Mutation p.H43Y 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-DA-A1IC-06 15 62228933 62228933 T A VPS13C Missense_Mutation p.D1873V 0.52 deleterious(0) possibly_damaging(0.883) TCGA-DA-A1IC-06 15 65490345 65490345 C T CILP Missense_Mutation p.R760Q 0.37 tolerated(0.51) probably_damaging(0.99) TCGA-DA-A1IC-06 15 66206298 66206298 C T MEGF11 Missense_Mutation p.M829I 0.27 tolerated(0.12) benign(0.222) TCGA-DA-A1IC-06 15 68500587 68500587 C T CLN6 Nonsense_Mutation p.W276* 0.31 TCGA-DA-A1IC-06 15 74588137 74588137 C T CCDC33 Missense_Mutation p.P380S 0.29 deleterious(0) probably_damaging(0.932) TCGA-DA-A1IC-06 15 74622662 74622662 G A CCDC33 Missense_Mutation p.G475R 0.35 tolerated(0.15) benign(0.047) TCGA-DA-A1IC-06 15 74882180 74882180 C T ARID3B Silent p.I239I 0.25 TCGA-DA-A1IC-06 15 75310285 75310285 C T SCAMP5 Missense_Mutation p.A123V 0.39 tolerated(0.06) benign(0.403) TCGA-DA-A1IC-06 15 75816585 75816585 G A PTPN9 Missense_Mutation p.R88C 0.26 deleterious(0.01) probably_damaging(0.95) TCGA-DA-A1IC-06 15 75942805 75942805 G A SNX33 Silent p.G454G 0.34 TCGA-DA-A1IC-06 15 78452546 78452546 A C IDH3A Missense_Mutation p.K96T 0.50 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 15 85341252 85341252 C T ZNF592 Missense_Mutation p.P851L 0.36 deleterious(0) possibly_damaging(0.798) TCGA-DA-A1IC-06 15 89414652 89414652 G A ACAN Missense_Mutation p.G2329D 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-DA-A1IC-06 15 91017136 91017136 C T IQGAP1 Silent p.S814S 0.30 TCGA-DA-A1IC-06 16 11931667 11931667 G A RSL1D1 Missense_Mutation p.P484S 0.39 tolerated(0.38) benign(0.004) TCGA-DA-A1IC-06 16 1250535 1250535 C T CACNA1H Silent p.F361F 0.34 TCGA-DA-A1IC-06 16 12618580 12618580 C G SNX29 Missense_Mutation p.R734G 0.38 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 16 14989888 14989888 C T NOMO1 3'UTR 0.23 TCGA-DA-A1IC-06 16 15092243 15092243 C T PDXDC1 Missense_Mutation p.P48S 0.13 deleterious(0) probably_damaging(0.925) TCGA-DA-A1IC-06 16 16162084 16162084 C T ABCC1 Silent p.F583F 0.44 TCGA-DA-A1IC-06 16 19195177 19195177 C T SYT17 Missense_Mutation p.S220L 0.34 deleterious(0) benign(0.256) TCGA-DA-A1IC-06 16 19468338 19468338 G A TMC5 Intron 0.53 TCGA-DA-A1IC-06 16 20448501 20448501 G A ACSM5 Missense_Mutation p.S479N 0.34 deleterious(0) possibly_damaging(0.471) TCGA-DA-A1IC-06 16 20696634 20696634 G A ACSM1 Missense_Mutation p.T95I 0.42 deleterious(0) probably_damaging(0.979) TCGA-DA-A1IC-06 16 2114419 2114419 C T TSC2 Silent p.I530I 0.34 TCGA-DA-A1IC-06 16 21221024 21221024 C T ZP2 Silent p.P86P 0.38 TCGA-DA-A1IC-06 16 2168111 2168111 G A PKD1 Silent p.I294I 0.52 TCGA-DA-A1IC-06 16 22563792 22563792 C T RP11-368J21.3 RNA 0.19 TCGA-DA-A1IC-06 16 2338046 2338046 C T ABCA3 Silent p.Q995Q 0.36 TCGA-DA-A1IC-06 16 23535604 23535604 G A EARS2 3'UTR 0.40 TCGA-DA-A1IC-06 16 23598636 23598636 G A NDUFAB1 Missense_Mutation p.P58L 0.26 deleterious(0.02) benign(0.027) TCGA-DA-A1IC-06 16 24196784 24196784 C T PRKCB Missense_Mutation p.P540S 0.30 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 16 2546535 2546535 C T RP11-20I23.1 Missense_Mutation p.S129F 0.23 deleterious(0) probably_damaging(0.983) TCGA-DA-A1IC-06 16 2577843 2577843 C T AMDHD2 Missense_Mutation p.S162F 0.38 deleterious(0) probably_damaging(0.946) TCGA-DA-A1IC-06 16 2647217 2647217 C T PDPK1 Missense_Mutation p.P499S 0.50 deleterious(0) possibly_damaging(0.688) TCGA-DA-A1IC-06 16 2647218 2647218 C T PDPK1 Missense_Mutation p.P499L 0.49 deleterious(0) possibly_damaging(0.665) TCGA-DA-A1IC-06 16 2836100 2836100 C T PRSS33 Silent p.R23R 0.45 TCGA-DA-A1IC-06 16 28603629 28603629 G A SULT1A2 Missense_Mutation p.R244C 0.31 deleterious(0) benign(0.2) TCGA-DA-A1IC-06 16 28603630 28603630 G C SULT1A2 Silent p.V243V 0.30 TCGA-DA-A1IC-06 16 29853079 29853079 C T MVP Missense_Mutation p.R452W 0.48 deleterious(0) probably_damaging(0.99) TCGA-DA-A1IC-06 16 30536347 30536347 G A ZNF768 Missense_Mutation p.P372S 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A1IC-06 16 31282368 31282368 C A ITGAM Nonsense_Mutation p.S174* 0.41 TCGA-DA-A1IC-06 16 31340550 31340550 C T ITGAM Missense_Mutation p.H933Y 0.27 tolerated(0.07) possibly_damaging(0.524) TCGA-DA-A1IC-06 16 31341482 31341482 G A ITGAM Silent p.V1020V 0.35 TCGA-DA-A1IC-06 16 31341483 31341483 G A ITGAM Missense_Mutation p.V1021M 0.30 deleterious(0) possibly_damaging(0.747) TCGA-DA-A1IC-06 16 3139523 3139523 C T ZSCAN10 Missense_Mutation p.E583K 0.33 deleterious(0.02) benign(0.384) TCGA-DA-A1IC-06 16 3165537 3165537 C T ZNF205 Missense_Mutation p.S80F 0.52 deleterious(0.01) possibly_damaging(0.646) TCGA-DA-A1IC-06 16 31926233 31926233 T G ZNF267 Silent p.S221S 0.41 TCGA-DA-A1IC-06 16 3273957 3273957 G A ZNF200 Missense_Mutation p.R375W 0.40 deleterious(0) probably_damaging(0.983) TCGA-DA-A1IC-06 16 3433091 3433091 G T ZSCAN32 Missense_Mutation p.Q407K 0.21 tolerated(0.14) benign(0.18) TCGA-DA-A1IC-06 16 3526210 3526210 C T NAA60 Intron 0.44 TCGA-DA-A1IC-06 16 3639432 3639432 C T SLX4 Missense_Mutation p.E1403K 0.39 deleterious(0.03) possibly_damaging(0.835) TCGA-DA-A1IC-06 16 426578 426578 C T TMEM8A Silent p.G290G 0.23 TCGA-DA-A1IC-06 16 51171159 51171159 C T SALL1 Missense_Mutation p.G1280E 0.32 deleterious(0) probably_damaging(0.954) TCGA-DA-A1IC-06 16 51171225 51171225 C T SALL1 Missense_Mutation p.G1258D 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 16 51174325 51174325 C T SALL1 Missense_Mutation p.R603K 0.43 tolerated(1) benign(0.001) TCGA-DA-A1IC-06 16 51175240 51175240 C T SALL1 Missense_Mutation p.G298E 0.34 tolerated(0.21) probably_damaging(1) TCGA-DA-A1IC-06 16 56623754 56623754 A G MT3 Intron 0.32 TCGA-DA-A1IC-06 16 68598392 68598392 C T ZFP90 Missense_Mutation p.L568F 0.31 tolerated(0.08) probably_damaging(1) TCGA-DA-A1IC-06 16 69184786 69184786 C T CIRH1A Silent p.L327L 0.31 TCGA-DA-A1IC-06 16 69184787 69184787 C T CIRH1A Nonsense_Mutation p.R328* 0.32 TCGA-DA-A1IC-06 16 69373483 69373483 C T NIP7 5'UTR 0.26 TCGA-DA-A1IC-06 16 70597922 70597922 C G SF3B3 Missense_Mutation p.T811R 0.35 tolerated(0.44) benign(0.064) TCGA-DA-A1IC-06 16 70926270 70926270 G A HYDIN Silent p.R3137R 0.26 TCGA-DA-A1IC-06 16 71411569 71411569 G A CALB2 Splice_Site p.X88_splice 0.35 TCGA-DA-A1IC-06 16 71668226 71668226 G A MARVELD3 Intron 0.31 TCGA-DA-A1IC-06 16 71668650 71668650 G A MARVELD3 Intron 0.40 TCGA-DA-A1IC-06 16 71682660 71682660 C A PHLPP2 3'UTR 0.44 TCGA-DA-A1IC-06 16 71898924 71898924 G C ZNF821 Missense_Mutation p.T65R 0.38 tolerated(0.16) probably_damaging(0.999) TCGA-DA-A1IC-06 16 72992931 72992931 G A ZFHX3 Nonsense_Mutation p.R372* 0.30 TCGA-DA-A1IC-06 16 74496043 74496043 G A GLG1 Silent p.S995S 0.31 TCGA-DA-A1IC-06 16 75563417 75563417 C T CHST5 Missense_Mutation p.R289H 0.30 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IC-06 16 76592486 76592486 G A CNTNAP4 Missense_Mutation p.R1205K 0.29 tolerated(0.88) benign(0.032) TCGA-DA-A1IC-06 16 77317805 77317805 G A ADAMTS18 3'UTR 0.39 TCGA-DA-A1IC-06 16 77353924 77353924 G A ADAMTS18 Missense_Mutation p.S785F 0.33 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IC-06 16 81155284 81155284 G A PKD1L2 RNA 0.25 TCGA-DA-A1IC-06 16 81187717 81187717 C T PKD1L2 RNA 0.31 TCGA-DA-A1IC-06 16 82131868 82131868 G A HSD17B2 Missense_Mutation p.A331T 0.40 deleterious(0) possibly_damaging(0.835) TCGA-DA-A1IC-06 16 825618 825618 C T MSLNL Silent p.G381G 0.26 TCGA-DA-A1IC-06 16 84353060 84353060 G A WFDC1 Missense_Mutation p.D149N 0.40 deleterious(0) possibly_damaging(0.842) TCGA-DA-A1IC-06 16 87445949 87445949 G A ZCCHC14 Missense_Mutation p.S656F 0.34 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-DA-A1IC-06 16 929698 929698 G A LMF1 Missense_Mutation p.H257Y 0.45 tolerated(0.14) benign(0.18) TCGA-DA-A1IC-06 16 9856976 9856976 C T GRIN2A 3'UTR 0.33 TCGA-DA-A1IC-06 17 10362677 10362677 T C MYH4 Missense_Mutation p.N493S 0.36 deleterious(0.01) possibly_damaging(0.542) TCGA-DA-A1IC-06 17 10429088 10429088 G A MYH2 Silent p.V1431V 0.53 TCGA-DA-A1IC-06 17 12647605 12647605 G A MYOCD Missense_Mutation p.A275T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 17 12887980 12887980 G A ARHGAP44 Missense_Mutation p.G691E 0.31 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-DA-A1IC-06 17 12898332 12898332 G A ELAC2 Missense_Mutation p.P619L 0.37 tolerated(0.21) benign(0.033) TCGA-DA-A1IC-06 17 15619830 15619830 C T ZNF286A Silent p.V264V 0.33 TCGA-DA-A1IC-06 17 15973652 15973652 C T NCOR1 Missense_Mutation p.R1447Q 0.38 probably_damaging(0.99) TCGA-DA-A1IC-06 17 17062245 17062245 G A MPRIP Missense_Mutation p.V659I 0.32 tolerated(0.16) benign(0.001) TCGA-DA-A1IC-06 17 18023051 18023051 G A MYO15A Missense_Mutation p.E313K 0.32 benign(0.305) TCGA-DA-A1IC-06 17 18659368 18659368 A G FBXW10 Missense_Mutation p.N378S 0.48 tolerated(0.3) benign(0.027) TCGA-DA-A1IC-06 17 19015770 19015770 T C SNORD3D RNA 0.10 TCGA-DA-A1IC-06 17 19835231 19835231 G A AKAP10 Missense_Mutation p.H510Y 0.28 deleterious(0.03) benign(0.228) TCGA-DA-A1IC-06 17 263312 263312 C T C17orf97 Silent p.H226H 0.50 TCGA-DA-A1IC-06 17 26817425 26817425 G A SLC13A2 Missense_Mutation p.G111E 0.34 tolerated(0.09) benign(0.398) TCGA-DA-A1IC-06 17 27023944 27023944 C T SUPT6H Silent p.D1351D 0.28 TCGA-DA-A1IC-06 17 27023945 27023945 C T SUPT6H Nonsense_Mutation p.Q1352* 0.27 TCGA-DA-A1IC-06 17 27028629 27028629 G A SUPT6H Missense_Mutation p.E1723K 0.35 deleterious(0.05) possibly_damaging(0.905) TCGA-DA-A1IC-06 17 27380587 27380587 C T PIPOX Missense_Mutation p.P212S 0.31 tolerated(0.16) benign(0.069) TCGA-DA-A1IC-06 17 27493258 27493258 G A MYO18A Missense_Mutation p.S234F 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 17 27899166 27899166 G A TP53I13 Missense_Mutation p.A174T 0.35 tolerated(0.17) benign(0.046) TCGA-DA-A1IC-06 17 29509639 29509639 C T NF1 Nonsense_Mutation p.Q282* 0.34 TCGA-DA-A1IC-06 17 29553538 29553538 G A NF1 Nonsense_Mutation p.W696* 0.26 TCGA-DA-A1IC-06 17 30348369 30348369 C G LRRC37B Silent p.A68A 0.31 TCGA-DA-A1IC-06 17 30348370 30348370 C T LRRC37B Missense_Mutation p.P69S 0.31 deleterious(0.02) benign(0.421) TCGA-DA-A1IC-06 17 30533950 30533950 G A RHOT1 Missense_Mutation p.E480K 0.38 tolerated(0.07) benign(0.149) TCGA-DA-A1IC-06 17 31438945 31438945 C T ASIC2 Nonsense_Mutation p.W283* 0.22 TCGA-DA-A1IC-06 17 32583826 32583826 A G CCL2 Missense_Mutation p.T94A 0.21 tolerated(0.15) benign(0.002) TCGA-DA-A1IC-06 17 32598743 32598743 C T CCL7 Silent p.I74I 0.26 TCGA-DA-A1IC-06 17 35898496 35898496 T A SYNRG Missense_Mutation p.L1149F 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-DA-A1IC-06 17 35898497 35898497 A G SYNRG Missense_Mutation p.L1149S 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 17 35898498 35898498 A G SYNRG Silent p.L1149L 0.21 TCGA-DA-A1IC-06 17 3646903 3646903 C T ITGAE Silent p.E776E 0.37 TCGA-DA-A1IC-06 17 37371268 37371268 C T STAC2 Silent p.R236R 0.26 TCGA-DA-A1IC-06 17 38296815 38296815 G C CASC3 Missense_Mutation p.R5P 0.16 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DA-A1IC-06 17 3839721 3839721 G A ATP2A3 Silent p.I788I 0.23 TCGA-DA-A1IC-06 17 38574030 38574030 G A TOP2A Missense_Mutation p.P5L 0.16 deleterious_low_confidence(0) benign(0.01) TCGA-DA-A1IC-06 17 38975816 38975816 C A KRT10 Silent p.L442L 0.57 TCGA-DA-A1IC-06 17 39165004 39165004 C T KRTAP3-1 3'UTR 0.53 TCGA-DA-A1IC-06 17 39382963 39382963 C T KRTAP9-2 Silent p.C19C 0.20 TCGA-DA-A1IC-06 17 39406029 39406029 C T KRTAP9-4 Silent p.C19C 0.13 TCGA-DA-A1IC-06 17 39593779 39593779 G A KRT38 Missense_Mutation p.P419L 0.42 tolerated(0.06) benign(0.013) TCGA-DA-A1IC-06 17 39890869 39890869 C T HAP1 Silent p.L6L 0.27 TCGA-DA-A1IC-06 17 40063700 40063700 G A ACLY Missense_Mutation p.P248S 0.20 deleterious(0.05) possibly_damaging(0.518) TCGA-DA-A1IC-06 17 40556804 40556804 G A PTRF Silent p.A358A 0.32 TCGA-DA-A1IC-06 17 40811916 40811916 G A TUBG2 Silent p.E38E 0.42 TCGA-DA-A1IC-06 17 41939261 41939261 G A CD300LG Silent p.S327S 0.45 TCGA-DA-A1IC-06 17 42478254 42478254 G A GPATCH8 Silent p.I397I 0.32 TCGA-DA-A1IC-06 17 42929142 42929142 G A EFTUD2 Missense_Mutation p.P920L 0.23 deleterious(0.05) possibly_damaging(0.901) TCGA-DA-A1IC-06 17 43332872 43332872 G A SPATA32 Missense_Mutation p.P226L 0.54 tolerated(0.22) benign(0.197) TCGA-DA-A1IC-06 17 46608044 46608044 G A HOXB1 Missense_Mutation p.P75S 0.27 tolerated(0.52) benign(0.011) TCGA-DA-A1IC-06 17 4686323 4686323 G A TM4SF5 Silent p.R190R 0.24 TCGA-DA-A1IC-06 17 47236441 47236441 G A B4GALNT2 Missense_Mutation p.D241N 0.30 tolerated(0.1) benign(0.049) TCGA-DA-A1IC-06 17 47783627 47783627 G A SLC35B1 Missense_Mutation p.S93F 0.31 deleterious(0) benign(0.117) TCGA-DA-A1IC-06 17 48628457 48628457 G A SPATA20 Silent p.R494R 0.35 TCGA-DA-A1IC-06 17 5064879 5064879 G A USP6 Missense_Mutation p.G962E 0.39 deleterious_low_confidence(0.04) benign(0.381) TCGA-DA-A1IC-06 17 53851150 53851150 C T PCTP Silent p.A135A 0.22 TCGA-DA-A1IC-06 17 53851151 53851151 C T PCTP Missense_Mutation p.R136W 0.22 deleterious(0) possibly_damaging(0.78) TCGA-DA-A1IC-06 17 56247763 56247763 G A OR4D2 Missense_Mutation p.M249I 0.24 tolerated(0.11) benign(0.02) TCGA-DA-A1IC-06 17 56247888 56247888 A G OR4D2 Missense_Mutation p.N291S 0.21 deleterious(0) possibly_damaging(0.799) TCGA-DA-A1IC-06 17 56432331 56432331 G A RNF43 Silent p.L775L 0.30 TCGA-DA-A1IC-06 17 56665017 56665017 C T TEX14 Missense_Mutation p.E911K 0.22 tolerated(0.24) benign(0.211) TCGA-DA-A1IC-06 17 57288417 57288417 C T SMG8 Silent p.F335F 0.29 TCGA-DA-A1IC-06 17 60742216 60742216 C T MRC2 Silent p.S142S 0.29 TCGA-DA-A1IC-06 17 61902690 61902690 C T FTSJ3 Nonsense_Mutation p.W169* 0.24 TCGA-DA-A1IC-06 17 62855684 62855684 A C LRRC37A3 Missense_Mutation p.L1527R 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 17 6350797 6350797 C T FAM64A Silent p.S103S 0.33 TCGA-DA-A1IC-06 17 64880763 64880763 C T CACNG5 Silent p.S185S 0.29 TCGA-DA-A1IC-06 17 6531876 6531876 G A KIAA0753 Silent p.S93S 0.31 TCGA-DA-A1IC-06 17 6920597 6920597 G A C17orf49 Missense_Mutation p.G179D 0.37 tolerated_low_confidence(0.24) possibly_damaging(0.713) TCGA-DA-A1IC-06 17 72363866 72363866 G A GPR142 Silent p.K74K 0.53 TCGA-DA-A1IC-06 17 72363867 72363867 G A GPR142 Missense_Mutation p.D75N 0.53 deleterious_low_confidence(0.04) benign(0.04) TCGA-DA-A1IC-06 17 72368006 72368006 G A GPR142 Missense_Mutation p.G219E 0.19 deleterious(0.04) probably_damaging(0.984) TCGA-DA-A1IC-06 17 72584678 72584678 C T CD300LD Silent p.G117G 0.21 TCGA-DA-A1IC-06 17 72608777 72608777 C T CD300E 3'UTR 0.53 TCGA-DA-A1IC-06 17 7286798 7286798 C T TNK1 Missense_Mutation p.P97S 0.39 tolerated(0.26) benign(0.075) TCGA-DA-A1IC-06 17 7290739 7290739 G A TNK1 Silent p.R485R 0.53 TCGA-DA-A1IC-06 17 72920757 72920757 G A OTOP2 Silent p.K10K 0.50 TCGA-DA-A1IC-06 17 73096434 73096434 C T SLC16A5 Missense_Mutation p.H226Y 0.28 tolerated(0.76) benign(0.06) TCGA-DA-A1IC-06 17 73780868 73780868 C T UNK 5'UTR 0.24 TCGA-DA-A1IC-06 17 73998155 73998155 C T CDK3 Missense_Mutation p.L83F 0.55 deleterious(0.01) possibly_damaging(0.503) TCGA-DA-A1IC-06 17 74004335 74004335 G A EVPL Nonsense_Mutation p.Q1651* 0.47 TCGA-DA-A1IC-06 17 74004880 74004895 TCCAGCTTGACCACTT - EVPL Frame_Shift_Del p.E1464Gfs*24 0.14 TCGA-DA-A1IC-06 17 74011352 74011352 G A EVPL Missense_Mutation p.P662S 0.25 tolerated(0.17) benign(0.014) TCGA-DA-A1IC-06 17 74023360 74023360 C T EVPL 5'UTR 0.20 TCGA-DA-A1IC-06 17 74023361 74023361 C T EVPL 5'UTR 0.19 TCGA-DA-A1IC-06 17 74155521 74155521 G A RNF157 Missense_Mutation p.S400L 0.60 tolerated(0.08) benign(0.005) TCGA-DA-A1IC-06 17 74477580 74477580 C T RHBDF2 Silent p.G9G 0.38 TCGA-DA-A1IC-06 17 7466977 7466977 C T SENP3 Missense_Mutation p.P195L 0.45 deleterious(0) benign(0.014) TCGA-DA-A1IC-06 17 76202102 76202102 C T AFMID Silent p.L291L 0.23 TCGA-DA-A1IC-06 17 76455098 76455098 G T DNAH17 Silent p.I3268I 0.24 TCGA-DA-A1IC-06 17 7674702 7674702 T A DNAH2 Missense_Mutation p.F1473I 0.34 probably_damaging(1) TCGA-DA-A1IC-06 17 76970772 76970772 T C LGALS3BP Missense_Mutation p.N125S 0.43 tolerated(0.21) benign(0.016) TCGA-DA-A1IC-06 17 76993529 76993529 A G CANT1 Missense_Mutation p.L59P 0.53 deleterious(0.02) possibly_damaging(0.756) TCGA-DA-A1IC-06 17 78175584 78175584 G A CARD14 Silent p.L631L 0.21 TCGA-DA-A1IC-06 17 79108181 79108181 C T AATK Missense_Mutation p.G59D 0.22 tolerated(0.88) benign(0.01) TCGA-DA-A1IC-06 17 79108182 79108182 C T AATK Missense_Mutation p.G59S 0.23 tolerated(0.11) benign(0.014) TCGA-DA-A1IC-06 17 79207757 79207757 G A ENTHD2 Intron 0.25 TCGA-DA-A1IC-06 17 79633556 79633556 G A OXLD1 Missense_Mutation p.R18C 0.21 tolerated(0.23) unknown(0) TCGA-DA-A1IC-06 17 79801736 79801736 G A P4HB 3'UTR 0.41 TCGA-DA-A1IC-06 17 7989535 7989535 C T ALOX12B Missense_Mutation p.G51S 0.38 tolerated(0.25) benign(0.012) TCGA-DA-A1IC-06 17 79974915 79974915 C T ASPSCR1 Missense_Mutation p.P619L 0.47 deleterious(0.03) benign(0.139) TCGA-DA-A1IC-06 17 80209309 80209309 G A CSNK1D Silent p.F277F 0.36 TCGA-DA-A1IC-06 17 8158942 8158942 C T PFAS Silent p.P169P 0.45 TCGA-DA-A1IC-06 17 8215337 8215337 C T ARHGEF15 5'UTR 0.24 TCGA-DA-A1IC-06 17 9765377 9765377 C T GLP2R Silent p.I342I 0.37 TCGA-DA-A1IC-06 18 10468492 10468492 C T APCDD1 Missense_Mutation p.H29Y 0.36 tolerated(0.39) benign(0.006) TCGA-DA-A1IC-06 18 18534804 18534804 G A ROCK1 Missense_Mutation p.H1265Y 0.27 deleterious(0) probably_damaging(0.992) TCGA-DA-A1IC-06 18 24436411 24436411 C T AQP4 Missense_Mutation p.G246S 0.39 tolerated(0.25) benign(0.01) TCGA-DA-A1IC-06 18 2750448 2750448 C T SMCHD1 Missense_Mutation p.R1370C 0.23 tolerated(0.22) benign(0.006) TCGA-DA-A1IC-06 18 2891755 2891755 G A EMILIN2 Missense_Mutation p.D544N 0.34 tolerated(0.79) benign(0.002) TCGA-DA-A1IC-06 18 28956808 28956808 C T DSG4 5'Flank 0.33 TCGA-DA-A1IC-06 18 28965108 28965108 G A DSG4 Missense_Mutation p.E20K 0.35 tolerated(0.34) benign(0.104) TCGA-DA-A1IC-06 18 29055630 29055630 G A DSG3 Missense_Mutation p.E803K 0.36 deleterious(0) possibly_damaging(0.811) TCGA-DA-A1IC-06 18 31319168 31319168 A G ASXL3 Silent p.E600E 0.29 TCGA-DA-A1IC-06 18 43224041 43224041 C T SLC14A2 Missense_Mutation p.P423S 0.09 deleterious(0) possibly_damaging(0.859) TCGA-DA-A1IC-06 18 44555345 44555345 G A TCEB3C Missense_Mutation p.A290V 0.06 tolerated(0.51) benign(0.056) TCGA-DA-A1IC-06 18 56202572 56202572 C T ALPK2 Missense_Mutation p.G1616E 0.28 tolerated(0.31) benign(0.059) TCGA-DA-A1IC-06 18 57136739 57136739 C T CCBE1 Silent p.E122E 0.35 TCGA-DA-A1IC-06 18 61259698 61259698 C T SERPINB13 Silent p.Y114Y 0.45 TCGA-DA-A1IC-06 18 61264581 61264581 G A SERPINB13 Missense_Mutation p.R387K 0.46 tolerated(0.05) benign(0.032) TCGA-DA-A1IC-06 18 61324197 61324197 C T SERPINB3 Missense_Mutation p.M212I 0.41 deleterious(0.02) possibly_damaging(0.857) TCGA-DA-A1IC-06 18 71816127 71816127 C T TIMM21 Silent p.I28I 0.35 TCGA-DA-A1IC-06 18 76754424 76754424 G A SALL3 Silent p.L811L 0.36 TCGA-DA-A1IC-06 18 77477837 77477837 C T CTDP1 Silent p.D746D 0.33 TCGA-DA-A1IC-06 19 1008150 1008150 G A GRIN3B Missense_Mutation p.G776R 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 19 10426573 10426573 C T FDX1L Missense_Mutation p.G34R 0.40 tolerated(0.35) benign(0.006) TCGA-DA-A1IC-06 19 12576517 12576517 C T ZNF709 Silent p.R73R 0.39 TCGA-DA-A1IC-06 19 1398967 1398967 G A GAMT Missense_Mutation p.S173F 0.32 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DA-A1IC-06 19 14094355 14094355 G A RFX1 Silent p.T124T 0.28 TCGA-DA-A1IC-06 19 14094356 14094356 G C RFX1 Missense_Mutation p.T124S 0.28 deleterious_low_confidence(0.05) benign(0.183) TCGA-DA-A1IC-06 19 14160061 14160061 G A IL27RA Missense_Mutation p.R446Q 0.37 tolerated(0.07) benign(0.177) TCGA-DA-A1IC-06 19 15075149 15075149 C T SLC1A6 Silent p.V191V 0.33 TCGA-DA-A1IC-06 19 15349758 15349758 G A BRD4 Silent p.A1272A 0.40 TCGA-DA-A1IC-06 19 15659975 15659975 G A CYP4F22 Missense_Mutation p.G433R 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 19 16038276 16038276 C T CYP4F11 Missense_Mutation p.D121N 0.34 tolerated(0.06) benign(0.182) TCGA-DA-A1IC-06 19 16038277 16038277 C T CYP4F11 Silent p.K120K 0.34 TCGA-DA-A1IC-06 19 16799020 16799020 C T TMEM38A Silent p.P246P 0.35 TCGA-DA-A1IC-06 19 17017762 17017762 C T CPAMD8 Missense_Mutation p.D1390N 0.27 tolerated(0.23) benign(0.041) TCGA-DA-A1IC-06 19 1784935 1784935 G A ATP8B3 Silent p.L1181L 0.46 TCGA-DA-A1IC-06 19 18119242 18119242 C T ARRDC2 Silent p.A41A 0.31 TCGA-DA-A1IC-06 19 19121000 19121000 G A SUGP2 Missense_Mutation p.R668C 0.37 deleterious(0.02) possibly_damaging(0.776) TCGA-DA-A1IC-06 19 19638111 19638111 C T NDUFA13 Silent p.F65F 0.42 TCGA-DA-A1IC-06 19 19653722 19653722 C T CILP2 Silent p.G306G 0.33 TCGA-DA-A1IC-06 19 19767485 19767485 G C ATP13A1 Missense_Mutation p.S356C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 19 2076990 2076990 G A MOB3A Silent p.F148F 0.25 TCGA-DA-A1IC-06 19 22154198 22154198 C T ZNF208 Missense_Mutation p.R1213K 0.27 tolerated(0.34) benign(0.001) TCGA-DA-A1IC-06 19 22941195 22941195 C T ZNF99 Missense_Mutation p.E506K 0.40 deleterious(0.02) probably_damaging(0.913) TCGA-DA-A1IC-06 19 22941813 22941813 G A ZNF99 Missense_Mutation p.L300F 0.34 deleterious(0.04) probably_damaging(1) TCGA-DA-A1IC-06 19 22941814 22941814 G A ZNF99 Silent p.H299H 0.34 TCGA-DA-A1IC-06 19 23329616 23329616 G A ZNF730 3'UTR 0.30 TCGA-DA-A1IC-06 19 2416539 2416539 G A TMPRSS9 Silent p.T549T 0.43 TCGA-DA-A1IC-06 19 29699056 29699056 G A UQCRFS1 Missense_Mutation p.S75F 0.39 deleterious(0.03) possibly_damaging(0.713) TCGA-DA-A1IC-06 19 30313187 30313187 T C CCNE1 Missense_Mutation p.F294S 0.38 deleterious(0) probably_damaging(0.983) TCGA-DA-A1IC-06 19 3281301 3281301 C T CELF5 Silent p.S236S 0.38 TCGA-DA-A1IC-06 19 36003654 36003654 A G DMKN Silent p.G155G 0.35 TCGA-DA-A1IC-06 19 3600423 3600423 G A TBXA2R Silent p.L70L 0.27 TCGA-DA-A1IC-06 19 36340480 36340480 G A NPHS1 Silent p.I228I 0.40 TCGA-DA-A1IC-06 19 36636934 36636934 C T CAPNS1 Silent p.L194L 0.33 TCGA-DA-A1IC-06 19 39051930 39051930 C T RYR1 Missense_Mutation p.P4154S 0.39 benign(0) TCGA-DA-A1IC-06 19 39804764 39804764 C T LRFN1 Missense_Mutation p.E405K 0.42 tolerated(0.16) benign(0.241) TCGA-DA-A1IC-06 19 40368399 40368399 C T FCGBP Missense_Mutation p.D4317N 0.07 benign(0.115) TCGA-DA-A1IC-06 19 40368400 40368400 C T FCGBP Silent p.G4316G 0.07 TCGA-DA-A1IC-06 19 40398331 40398331 C T FCGBP Silent p.G2212G 0.41 TCGA-DA-A1IC-06 19 41008109 41008109 G A SPTBN4 Nonsense_Mutation p.W324* 0.43 TCGA-DA-A1IC-06 19 41594957 41594957 G A CYP2A13 Missense_Mutation p.G102S 0.31 deleterious(0.03) probably_damaging(0.961) TCGA-DA-A1IC-06 19 41748854 41748854 C T AXL Missense_Mutation p.A460V 0.31 tolerated(0.11) probably_damaging(0.94) TCGA-DA-A1IC-06 19 4219743 4219743 G A ANKRD24 Silent p.E1053E 0.33 TCGA-DA-A1IC-06 19 42355792 42355792 A C DMRTC2 3'UTR 0.45 TCGA-DA-A1IC-06 19 42600283 42600283 T C POU2F2 Missense_Mutation p.Q205R 0.42 deleterious(0) possibly_damaging(0.855) TCGA-DA-A1IC-06 19 42880504 42880504 A G MEGF8 Silent p.P2638P 0.27 TCGA-DA-A1IC-06 19 43099069 43099069 C T CEACAM8 5'UTR 0.41 TCGA-DA-A1IC-06 19 43979479 43979479 G A PHLDB3 3'UTR 0.57 TCGA-DA-A1IC-06 19 46117952 46117952 G A EML2 Missense_Mutation p.P736L 0.34 deleterious(0.03) benign(0.038) TCGA-DA-A1IC-06 19 46282618 46282618 C T DMPK Splice_Site p.X123_splice 0.29 TCGA-DA-A1IC-06 19 46842962 46842962 G A HIF3A 3'UTR 0.38 TCGA-DA-A1IC-06 19 48956137 48956137 G A GRWD1 Missense_Mutation p.G399E 0.29 tolerated(1) benign(0) TCGA-DA-A1IC-06 19 49206783 49206783 C T FUT2 Silent p.S190S 0.28 TCGA-DA-A1IC-06 19 49261371 49261371 C T FGF21 Missense_Mutation p.P175L 0.42 tolerated(0.17) benign(0.003) TCGA-DA-A1IC-06 19 49474231 49474231 G A GYS1 Silent p.G533G 0.35 TCGA-DA-A1IC-06 19 49812645 49812645 G A SLC6A16 Silent p.L300L 0.43 TCGA-DA-A1IC-06 19 49969058 49969058 C T ALDH16A1 Silent p.S544S 0.37 TCGA-DA-A1IC-06 19 50165506 50165506 C T IRF3 Silent p.R227R 0.46 TCGA-DA-A1IC-06 19 50795539 50795539 C T MYH14 Missense_Mutation p.R1717W 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 19 51462397 51462397 G A KLK6 3'UTR 0.29 TCGA-DA-A1IC-06 19 51875431 51875431 G A NKG7 Silent p.T96T 0.37 TCGA-DA-A1IC-06 19 52130501 52130501 C T SIGLEC5 Missense_Mutation p.G428E 0.36 tolerated(0.05) benign(0.141) TCGA-DA-A1IC-06 19 5215357 5215357 G A PTPRS Missense_Mutation p.R1421C 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 19 52249061 52249061 G A FPR1 3'UTR 0.42 TCGA-DA-A1IC-06 19 53952800 53952800 C T ZNF761 RNA 0.30 TCGA-DA-A1IC-06 19 54803737 54803737 G A LILRA3 Silent p.P29P 0.36 TCGA-DA-A1IC-06 19 55045108 55045108 C A KIR3DX1 Silent p.S76S 0.42 TCGA-DA-A1IC-06 19 55087289 55087289 G A LILRA2 Missense_Mutation p.R323K 0.39 tolerated(0.35) benign(0.217) TCGA-DA-A1IC-06 19 55832424 55832424 G A TMEM150B 5'UTR 0.60 TCGA-DA-A1IC-06 19 55853226 55853226 C T SUV420H2 5'UTR 0.50 TCGA-DA-A1IC-06 19 56321439 56321439 C T NLRP11 Missense_Mutation p.M179I 0.39 tolerated(0.38) benign(0.026) TCGA-DA-A1IC-06 19 56379170 56379170 A G NLRP4 Missense_Mutation p.N761S 0.43 tolerated(0.14) probably_damaging(0.998) TCGA-DA-A1IC-06 19 56520162 56520162 C T NLRP5 Missense_Mutation p.P151S 0.52 tolerated(0.41) benign(0.01) TCGA-DA-A1IC-06 19 56704332 56704332 T A ZSCAN5B Missense_Mutation p.E30D 0.50 tolerated(0.59) benign(0.135) TCGA-DA-A1IC-06 19 56733114 56733114 C T ZSCAN5A Missense_Mutation p.E441K 0.44 tolerated(0.92) benign(0.014) TCGA-DA-A1IC-06 19 57286781 57286781 C T ZIM2 Missense_Mutation p.E287K 0.34 tolerated(0.25) benign(0.046) TCGA-DA-A1IC-06 19 57326176 57326176 G A PEG3 Missense_Mutation p.R1212C 0.31 deleterious(0.03) benign(0.11) TCGA-DA-A1IC-06 19 57646259 57646259 C T ZIM3 3'UTR 0.43 TCGA-DA-A1IC-06 19 57646480 57646480 G A ZIM3 Missense_Mutation p.H409Y 0.42 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IC-06 19 5789331 5789331 G A DUS3L Nonsense_Mutation p.Q263* 0.30 TCGA-DA-A1IC-06 19 5789332 5789332 G A DUS3L Silent p.A262A 0.30 TCGA-DA-A1IC-06 19 57931051 57931051 T C AC003002.6 Missense_Mutation p.V76A 0.35 tolerated(0.09) benign(0.142) TCGA-DA-A1IC-06 19 58058694 58058694 A T ZNF550 Missense_Mutation p.N265K 0.37 tolerated(0.35) benign(0.087) TCGA-DA-A1IC-06 19 58118305 58118305 C T ZNF530 Missense_Mutation p.S471L 0.37 tolerated(0.49) possibly_damaging(0.659) TCGA-DA-A1IC-06 19 58420698 58420698 A G ZNF417 Silent p.R316R 0.31 TCGA-DA-A1IC-06 19 58470085 58470085 A C C19orf18 Missense_Mutation p.V178G 0.71 deleterious(0) possibly_damaging(0.851) TCGA-DA-A1IC-06 19 6165909 6165909 C T ACSBG2 Silent p.I207I 0.40 TCGA-DA-A1IC-06 19 6418057 6418057 C T KHSRP Missense_Mutation p.E305K 0.26 deleterious(0.02) probably_damaging(0.924) TCGA-DA-A1IC-06 19 6467832 6467832 C T DENND1C Missense_Mutation p.E697K 0.32 tolerated_low_confidence(0.07) benign(0.007) TCGA-DA-A1IC-06 19 6684608 6684608 G A C3 Silent p.F1361F 0.41 TCGA-DA-A1IC-06 19 6702583 6702583 C T C3 Silent p.L751L 0.41 TCGA-DA-A1IC-06 19 6763733 6763733 G A SH2D3A Silent p.D9D 0.41 TCGA-DA-A1IC-06 19 7964377 7964377 G A LRRC8E Missense_Mutation p.G324R 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 19 8503369 8503369 C T MARCH2 Missense_Mutation p.P227L 0.36 tolerated(0.35) benign(0) TCGA-DA-A1IC-06 19 9003603 9003603 C T MUC16 Missense_Mutation p.R13346K 0.30 possibly_damaging(0.748) TCGA-DA-A1IC-06 19 9058524 9058524 G A MUC16 Missense_Mutation p.S9641F 0.42 unknown(0) TCGA-DA-A1IC-06 19 9060792 9060792 G A MUC16 Missense_Mutation p.S8885F 0.45 unknown(0) TCGA-DA-A1IC-06 19 9066038 9066038 C T MUC16 Silent p.T7136T 0.29 TCGA-DA-A1IC-06 19 9083300 9083300 C T MUC16 Missense_Mutation p.A2839T 0.50 unknown(0) TCGA-DA-A1IC-06 19 9083630 9083630 G A MUC16 Missense_Mutation p.P2729S 0.35 unknown(0) TCGA-DA-A1IC-06 19 9091815 9091815 G A MUC16 5'UTR 0.28 TCGA-DA-A1IC-06 19 9325295 9325295 G A OR7D4 Silent p.F73F 0.35 TCGA-DA-A1IC-06 19 9449175 9449175 C T ZNF559 5'UTR 0.37 TCGA-DA-A1IC-06 19 9452399 9452399 T A ZNF559 Missense_Mutation p.F91Y 0.31 tolerated(1) benign(0) TCGA-DA-A1IC-06 1 107938086 107938086 C T NTNG1 Intron 0.29 TCGA-DA-A1IC-06 1 110719356 110719356 C T SLC6A17 Missense_Mutation p.P287S 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 1 111494808 111494808 G A LRIF1 Missense_Mutation p.S233F 0.33 deleterious(0) probably_damaging(0.919) TCGA-DA-A1IC-06 1 112321074 112321074 C T KCND3 Missense_Mutation p.R501Q 0.27 tolerated_low_confidence(0.37) benign(0.002) TCGA-DA-A1IC-06 1 114252914 114252914 C T PHTF1 Missense_Mutation p.G411R 0.29 tolerated(0.12) probably_damaging(0.939) TCGA-DA-A1IC-06 1 115576077 115576077 G A TSHB Missense_Mutation p.E32K 0.44 deleterious(0) possibly_damaging(0.705) TCGA-DA-A1IC-06 1 115828975 115828975 T A NGF Missense_Mutation p.T148S 0.32 tolerated(0.47) benign(0.001) TCGA-DA-A1IC-06 1 119964868 119964868 C T HSD3B2 Silent p.V248V 0.31 TCGA-DA-A1IC-06 1 12004676 12004676 C T PLOD1 Intron 0.33 TCGA-DA-A1IC-06 1 120307174 120307174 C T HMGCS2 Silent p.E60E 0.33 TCGA-DA-A1IC-06 1 120548194 120548194 A T NOTCH2 Nonsense_Mutation p.L58* 0.13 TCGA-DA-A1IC-06 1 12321991 12321991 C T VPS13D Missense_Mutation p.A483V 0.40 benign(0.043) TCGA-DA-A1IC-06 1 12704574 12704574 C T AADACL4 Silent p.V3V 0.46 TCGA-DA-A1IC-06 1 145323702 145323702 C T NBPF10 Missense_Mutation p.P1180L 0.05 probably_damaging(0.997) TCGA-DA-A1IC-06 1 147381370 147381370 G A GJA8 Missense_Mutation p.D430N 0.32 deleterious(0) unknown(0) TCGA-DA-A1IC-06 1 149895454 149895454 G A SF3B4 Nonsense_Mutation p.R419* 0.27 TCGA-DA-A1IC-06 1 150129668 150129668 C T PLEKHO1 Silent p.H171H 0.66 TCGA-DA-A1IC-06 1 150129669 150129669 C T PLEKHO1 Silent p.L172L 0.65 TCGA-DA-A1IC-06 1 150469286 150469286 G A TARS2 Missense_Mutation p.E308K 0.46 deleterious(0.03) benign(0.371) TCGA-DA-A1IC-06 1 151015476 151015476 G T BNIPL Nonsense_Mutation p.E160* 0.21 TCGA-DA-A1IC-06 1 151288521 151288521 G A PI4KB Missense_Mutation p.S158L 0.20 tolerated(0.07) benign(0.43) TCGA-DA-A1IC-06 1 152129266 152129266 C T RPTN Silent p.R103R 0.60 TCGA-DA-A1IC-06 1 152191721 152191721 C T HRNR Missense_Mutation p.G795E 0.18 unknown(0) TCGA-DA-A1IC-06 1 152282112 152282112 G A FLG Silent p.S1750S 0.17 TCGA-DA-A1IC-06 1 152324979 152324979 G A FLG2 Silent p.S1761S 0.43 TCGA-DA-A1IC-06 1 152328911 152328911 G A FLG2 Nonsense_Mutation p.Q451* 0.16 TCGA-DA-A1IC-06 1 152383340 152383340 T C CRNN Missense_Mutation p.E73G 0.18 deleterious(0) probably_damaging(0.989) TCGA-DA-A1IC-06 1 152671415 152671415 C T LCE2A Missense_Mutation p.P13L 0.56 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A1IC-06 1 154461714 154461714 G A SHE Silent p.S279S 0.19 TCGA-DA-A1IC-06 1 154461715 154461715 G A SHE Missense_Mutation p.S279F 0.18 deleterious(0.03) possibly_damaging(0.867) TCGA-DA-A1IC-06 1 154938947 154938947 G A SHC1 Missense_Mutation p.P344S 0.17 tolerated(0.49) benign(0.02) TCGA-DA-A1IC-06 1 155154622 155154622 C T TRIM46 Missense_Mutation p.P628L 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 1 155154623 155154623 C T TRIM46 Silent p.P628P 0.18 TCGA-DA-A1IC-06 1 155257071 155257071 T C HCN3 Missense_Mutation p.F529L 0.22 deleterious(0) benign(0.42) TCGA-DA-A1IC-06 1 156255002 156255002 G A TMEM79 5'UTR 0.20 TCGA-DA-A1IC-06 1 156844179 156844179 C T NTRK1 Silent p.S394S 0.22 TCGA-DA-A1IC-06 1 157497563 157497563 G A FCRL5 Missense_Mutation p.H602Y 0.22 deleterious(0.04) benign(0.366) TCGA-DA-A1IC-06 1 157497650 157497650 G A FCRL5 Missense_Mutation p.P573S 0.14 tolerated(0.06) probably_damaging(0.994) TCGA-DA-A1IC-06 1 158576568 158576568 C T OR10Z1 Missense_Mutation p.L114F 0.49 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 1 158639531 158639531 C T SPTA1 Missense_Mutation p.D549N 0.63 tolerated(0.26) probably_damaging(1) TCGA-DA-A1IC-06 1 159683565 159683565 C T CRP Missense_Mutation p.G142E 0.17 deleterious(0.03) probably_damaging(0.948) TCGA-DA-A1IC-06 1 159778028 159778028 G A FCRL6 Missense_Mutation p.R38Q 0.15 tolerated(0.83) benign(0.007) TCGA-DA-A1IC-06 1 160853271 160853271 G A ITLN1 Missense_Mutation p.P35L 0.26 tolerated(0.33) benign(0.036) TCGA-DA-A1IC-06 1 16270310 16270310 G A ZBTB17 Silent p.T484T 0.28 TCGA-DA-A1IC-06 1 167064135 167064135 G A DUSP27 Missense_Mutation p.E17K 0.26 deleterious(0.04) benign(0.147) TCGA-DA-A1IC-06 1 167096525 167096525 C T DUSP27 Silent p.S719S 0.30 TCGA-DA-A1IC-06 1 167874424 167874424 C T ADCY10 5'UTR 0.59 TCGA-DA-A1IC-06 1 167874425 167874425 C T ADCY10 5'UTR 0.62 TCGA-DA-A1IC-06 1 168269660 168269660 A T TBX19 Missense_Mutation p.R222S 0.27 deleterious(0.03) benign(0.012) TCGA-DA-A1IC-06 1 16902895 16902895 G A NBPF1 Silent p.S662S 0.14 TCGA-DA-A1IC-06 1 170521292 170521292 T C GORAB Silent p.L292L 0.61 TCGA-DA-A1IC-06 1 171072937 171072937 G A FMO3 Silent p.E48E 0.58 TCGA-DA-A1IC-06 1 171501485 171501485 C T PRRC2C Missense_Mutation p.P418S 0.23 unknown(0) TCGA-DA-A1IC-06 1 17303271 17303271 G A MFAP2 Missense_Mutation p.S58F 0.44 tolerated_low_confidence(0.22) benign(0.438) TCGA-DA-A1IC-06 1 173526645 173526645 A C SLC9C2 Missense_Mutation p.L350W 0.41 deleterious(0) probably_damaging(0.968) TCGA-DA-A1IC-06 1 173552728 173552728 C T SLC9C2 Missense_Mutation p.G186E 0.55 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 1 175097859 175097859 G A TNN Missense_Mutation p.E1103K 0.12 deleterious(0.03) benign(0.077) TCGA-DA-A1IC-06 1 176525476 176525476 C T PAPPA2 Silent p.I6I 0.22 TCGA-DA-A1IC-06 1 176681088 176681088 C T PAPPA2 Silent p.L1257L 0.16 TCGA-DA-A1IC-06 1 176833300 176833300 C T ASTN1 3'UTR 0.14 TCGA-DA-A1IC-06 1 177030324 177030324 G A ASTN1 Missense_Mutation p.H121Y 0.22 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-DA-A1IC-06 1 177913708 177913708 G A SEC16B Silent p.I623I 0.60 TCGA-DA-A1IC-06 1 179815820 179815820 G A TOR1AIP2 Missense_Mutation p.P267S 0.17 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IC-06 1 182845262 182845262 A G DHX9 Silent p.E631E 0.54 TCGA-DA-A1IC-06 1 19441987 19441987 C A UBR4 Missense_Mutation p.E3656D 0.37 possibly_damaging(0.899) TCGA-DA-A1IC-06 1 196438186 196438186 C T KCNT2 Missense_Mutation p.E133K 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-DA-A1IC-06 1 196757423 196757423 G A CFHR3 Missense_Mutation p.E170K 0.49 tolerated(1) probably_damaging(0.982) TCGA-DA-A1IC-06 1 196762504 196762504 G A CFHR3 Missense_Mutation p.R285K 0.19 tolerated(1) benign(0) TCGA-DA-A1IC-06 1 196801096 196801096 G A CFHR1 Silent p.G320G 0.21 TCGA-DA-A1IC-06 1 196919996 196919996 C T CFHR2 Missense_Mutation p.P90S 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-DA-A1IC-06 1 196919997 196919997 C T CFHR2 Missense_Mutation p.P90L 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 1 197407750 197407750 A C CRB1 Missense_Mutation p.T1275P 0.13 deleterious(0) benign(0.013) TCGA-DA-A1IC-06 1 197407751 197407751 C A CRB1 Missense_Mutation p.T1275K 0.15 deleterious(0) benign(0.197) TCGA-DA-A1IC-06 1 200868618 200868618 T A C1orf106 Missense_Mutation p.S25T 0.64 tolerated(0.29) benign(0.222) TCGA-DA-A1IC-06 1 201081523 201081523 C T CACNA1S 5'UTR 0.48 TCGA-DA-A1IC-06 1 201263089 201263089 G A PKP1 Silent p.L74L 0.31 TCGA-DA-A1IC-06 1 202287996 202287996 G A LGR6 Silent p.A855A 0.36 TCGA-DA-A1IC-06 1 203054834 203054834 C T MYOG Missense_Mutation p.A86T 0.20 deleterious(0) probably_damaging(0.989) TCGA-DA-A1IC-06 1 203054835 203054835 C T MYOG Silent p.A85A 0.20 TCGA-DA-A1IC-06 1 203832801 203832801 T C SNRPE Missense_Mutation p.I31T 0.60 deleterious(0.02) benign(0.108) TCGA-DA-A1IC-06 1 204131262 204131262 C T REN Missense_Mutation p.R43Q 0.16 deleterious(0.02) possibly_damaging(0.719) TCGA-DA-A1IC-06 1 204923358 204923358 G A NFASC Silent p.K86K 0.30 TCGA-DA-A1IC-06 1 205819062 205819062 C T PM20D1 Missense_Mutation p.E47K 0.19 deleterious(0.01) benign(0.04) TCGA-DA-A1IC-06 1 206821165 206821165 C T DYRK3 Nonsense_Mutation p.R208* 0.27 TCGA-DA-A1IC-06 1 207925405 207925405 C T CD46 5'UTR 0.22 TCGA-DA-A1IC-06 1 20829787 20829787 G A MUL1 Missense_Mutation p.H46Y 0.35 tolerated(0.31) benign(0.072) TCGA-DA-A1IC-06 1 20990935 20990935 G A KIF17 3'UTR 0.70 TCGA-DA-A1IC-06 1 21226294 21226294 G A EIF4G3 Missense_Mutation p.P582L 0.32 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-DA-A1IC-06 1 21329264 21329264 G A EIF4G3 5'UTR 0.37 TCGA-DA-A1IC-06 1 214500988 214500988 G A SMYD2 Missense_Mutation p.C209Y 0.24 deleterious(0) probably_damaging(0.974) TCGA-DA-A1IC-06 1 215345525 215345525 A G KCNK2 Silent p.A274A 0.20 TCGA-DA-A1IC-06 1 216371854 216371854 C T USH2A Missense_Mutation p.R1295Q 0.40 benign(0.109) TCGA-DA-A1IC-06 1 216692670 216692670 G A ESRRG Missense_Mutation p.S331L 0.20 deleterious(0.01) benign(0.005) TCGA-DA-A1IC-06 1 220805608 220805608 G A MARK1 Missense_Mutation p.D359N 0.20 tolerated(0.58) benign(0.031) TCGA-DA-A1IC-06 1 22176663 22176663 G A HSPG2 Silent p.V2439V 0.32 TCGA-DA-A1IC-06 1 22186462 22186462 G A HSPG2 Missense_Mutation p.P1683L 0.29 probably_damaging(0.985) TCGA-DA-A1IC-06 1 226175944 226175944 G A SDE2 Missense_Mutation p.P263S 0.34 tolerated(0.13) benign(0.285) TCGA-DA-A1IC-06 1 228248031 228248031 C T WNT3A 3'UTR 0.43 TCGA-DA-A1IC-06 1 228285396 228285396 C T ARF1 Silent p.L122L 0.66 TCGA-DA-A1IC-06 1 229730347 229730347 G A TAF5L Silent p.D489D 0.70 TCGA-DA-A1IC-06 1 232144893 232144893 C T DISC1 3'UTR 0.25 TCGA-DA-A1IC-06 1 233514917 233514917 C T MLK4 Missense_Mutation p.A722V 0.19 tolerated(0.49) benign(0.05) TCGA-DA-A1IC-06 1 234509472 234509472 C T COA6 Missense_Mutation p.P3L 0.26 deleterious_low_confidence(0) unknown(0) TCGA-DA-A1IC-06 1 24080687 24080687 C T TCEB3 Silent p.L571L 0.41 TCGA-DA-A1IC-06 1 241797921 241797921 C T CHML Missense_Mutation p.G383E 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 1 242020715 242020715 T C EXO1 Silent p.L158L 0.19 TCGA-DA-A1IC-06 1 24392359 24392359 C T MYOM3 Intron 0.33 TCGA-DA-A1IC-06 1 24402693 24402693 T C MYOM3 Missense_Mutation p.Q886R 0.34 tolerated(0.47) benign(0.004) TCGA-DA-A1IC-06 1 247582221 247582221 C A NLRP3 Missense_Mutation p.P42Q 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 1 24768661 24768661 C T NIPAL3 Silent p.S93S 0.37 TCGA-DA-A1IC-06 1 248031359 248031359 T C TRIM58 Missense_Mutation p.F289L 0.37 tolerated(0.12) benign(0.178) TCGA-DA-A1IC-06 1 248059071 248059071 C T OR2W3 Silent p.F61F 0.23 TCGA-DA-A1IC-06 1 248616210 248616210 G A OR2T2 Missense_Mutation p.V38M 0.20 tolerated(0.69) probably_damaging(0.997) TCGA-DA-A1IC-06 1 24861886 24861886 G A RCAN3 3'UTR 0.50 TCGA-DA-A1IC-06 1 248737509 248737509 A C OR2T34 Missense_Mutation p.C184G 0.31 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 1 248737510 248737510 G A OR2T34 Silent p.F183F 0.32 TCGA-DA-A1IC-06 1 2520471 2520471 C T FAM213B Missense_Mutation p.P221S 0.34 tolerated(0.09) benign(0.02) TCGA-DA-A1IC-06 1 26104797 26104797 G A MAN1C1 Missense_Mutation p.E487K 0.42 deleterious(0.02) benign(0.199) TCGA-DA-A1IC-06 1 27100165 27100165 C T ARID1A Missense_Mutation p.P1321S 0.36 unknown(0) TCGA-DA-A1IC-06 1 28301011 28301011 G A EYA3 Missense_Mutation p.S563F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 1 28904237 28904237 T C TRNAU1AP 3'UTR 0.41 TCGA-DA-A1IC-06 1 29533322 29533322 G A MECR Missense_Mutation p.P168S 0.42 deleterious(0) probably_damaging(0.983) TCGA-DA-A1IC-06 1 32050548 32050548 C G TINAGL1 Silent p.P256P 0.32 TCGA-DA-A1IC-06 1 32050549 32050549 C T TINAGL1 Nonsense_Mutation p.Q257* 0.32 TCGA-DA-A1IC-06 1 32157060 32157060 G T COL16A1 Silent p.P452P 0.36 TCGA-DA-A1IC-06 1 33366825 33366825 G A TMEM54 Silent p.L5L 0.29 TCGA-DA-A1IC-06 1 34066541 34066541 C T CSMD2 Silent p.Q2262Q 0.37 TCGA-DA-A1IC-06 1 34189893 34189893 G A CSMD2 Nonsense_Mutation p.Q929* 0.29 TCGA-DA-A1IC-06 1 34209109 34209109 G A CSMD2 Silent p.L609L 0.29 TCGA-DA-A1IC-06 1 36826901 36826901 C T STK40 Silent p.G11G 0.34 TCGA-DA-A1IC-06 1 38184483 38184483 G A EPHA10 Missense_Mutation p.P921L 0.26 tolerated(0.14) possibly_damaging(0.744) TCGA-DA-A1IC-06 1 41300675 41300675 G A KCNQ4 Silent p.K550K 0.29 TCGA-DA-A1IC-06 1 43905671 43905671 G A SZT2 Missense_Mutation p.E2331K 0.39 deleterious(0) probably_damaging(0.963) TCGA-DA-A1IC-06 1 46488950 46488950 G A MAST2 Missense_Mutation p.D511N 0.40 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DA-A1IC-06 1 47101409 47101409 G A ATPAF1 3'UTR 0.38 TCGA-DA-A1IC-06 1 47276522 47276522 C T CYP4B1 Missense_Mutation p.H75Y 0.20 deleterious(0) benign(0.43) TCGA-DA-A1IC-06 1 47515705 47515705 G A CYP4X1 Silent p.E463E 0.39 TCGA-DA-A1IC-06 1 51439938 51439938 A G CDKN2C Missense_Mutation p.Q168R 0.33 deleterious_low_confidence(0) benign(0.003) TCGA-DA-A1IC-06 1 52705059 52705059 C T ZFYVE9 Missense_Mutation p.S657F 0.34 deleterious(0) possibly_damaging(0.498) TCGA-DA-A1IC-06 1 53559150 53559150 G A SLC1A7 Silent p.I260I 0.27 TCGA-DA-A1IC-06 1 54284681 54284681 G A NDC1 Silent p.F222F 0.20 TCGA-DA-A1IC-06 1 55119419 55119419 G A MROH7 Missense_Mutation p.E274K 0.45 deleterious_low_confidence(0.04) benign(0.024) TCGA-DA-A1IC-06 1 57221585 57221585 G A C1orf168 Missense_Mutation p.P372S 0.37 tolerated(0.4) benign(0.146) TCGA-DA-A1IC-06 1 57378088 57378088 C T C8A Missense_Mutation p.H465Y 0.34 tolerated(0.57) benign(0.014) TCGA-DA-A1IC-06 1 57431619 57431619 C T C8B Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-DA-A1IC-06 1 57535066 57535066 G A DAB1 Silent p.I210I 0.33 TCGA-DA-A1IC-06 1 60491080 60491080 C T C1orf87 Missense_Mutation p.E374K 0.27 tolerated(0.14) probably_damaging(0.989) TCGA-DA-A1IC-06 1 64515362 64515362 G A ROR1 Splice_Site p.X55_splice 0.40 TCGA-DA-A1IC-06 1 6589208 6589208 G A NOL9 Silent p.L557L 0.48 TCGA-DA-A1IC-06 1 67299708 67299708 G A WDR78 Silent p.S619S 0.32 TCGA-DA-A1IC-06 1 74507374 74507374 C T LRRIQ3 Missense_Mutation p.G414D 0.37 deleterious(0) possibly_damaging(0.86) TCGA-DA-A1IC-06 1 7998817 7998817 C T TNFRSF9 Missense_Mutation p.G58R 0.37 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 1 82432110 82432110 C T LPHN2 Silent p.I705I 0.35 TCGA-DA-A1IC-06 1 89486328 89486328 T A GBP3 Missense_Mutation p.E26V 0.40 deleterious(0) possibly_damaging(0.783) TCGA-DA-A1IC-06 1 9324954 9324954 C T H6PD 3'UTR 0.42 TCGA-DA-A1IC-06 1 94466457 94466457 G A ABCA4 Silent p.T2138T 0.35 TCGA-DA-A1IC-06 1 94668540 94668540 C T ARHGAP29 Silent p.R296R 0.27 TCGA-DA-A1IC-06 1 94670742 94670742 G A ARHGAP29 Missense_Mutation p.P191L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IC-06 1 95367748 95367748 C T CNN3 Missense_Mutation p.E105K 0.35 tolerated(0.12) possibly_damaging(0.741) TCGA-DA-A1IC-06 20 17434573 17434573 G A PCSK2 Missense_Mutation p.G358R 0.36 deleterious(0.03) probably_damaging(1) TCGA-DA-A1IC-06 20 17434574 17434574 G A PCSK2 Missense_Mutation p.G358E 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 20 17462516 17462516 G A PCSK2 Missense_Mutation p.G573E 0.34 tolerated(1) benign(0.212) TCGA-DA-A1IC-06 20 23584341 23584341 G A CST9 Silent p.L96L 0.35 TCGA-DA-A1IC-06 20 23669472 23669472 C T CST4 Silent p.Q45Q 0.31 TCGA-DA-A1IC-06 20 30432313 30432313 G A FOXS1 3'UTR 0.34 TCGA-DA-A1IC-06 20 306916 306916 G A SOX12 Silent p.K116K 0.40 TCGA-DA-A1IC-06 20 31678582 31678582 G A BPIFB4 Missense_Mutation p.E374K 0.34 tolerated(0.17) benign(0.053) TCGA-DA-A1IC-06 20 32345035 32345035 G A ZNF341 Missense_Mutation p.G275R 0.36 tolerated(0.21) possibly_damaging(0.897) TCGA-DA-A1IC-06 20 33169475 33169475 C T PIGU Missense_Mutation p.E310K 0.23 tolerated(0.15) benign(0.307) TCGA-DA-A1IC-06 20 34022071 34022071 C T GDF5 Missense_Mutation p.R381Q 0.28 deleterious(0.03) benign(0.102) TCGA-DA-A1IC-06 20 34087914 34087914 C T CEP250 Missense_Mutation p.R1272C 0.31 benign(0.005) TCGA-DA-A1IC-06 20 34241544 34241544 G A RBM12 Silent p.I567I 0.34 TCGA-DA-A1IC-06 20 3655201 3655201 G A ADAM33 Missense_Mutation p.P184S 0.37 tolerated(0.53) benign(0.02) TCGA-DA-A1IC-06 20 3721513 3721513 C T HSPA12B Missense_Mutation p.T32I 0.24 tolerated_low_confidence(0.05) benign(0.187) TCGA-DA-A1IC-06 20 43057089 43057089 G A HNF4A Missense_Mutation p.G415E 0.38 tolerated_low_confidence(0.31) probably_damaging(1) TCGA-DA-A1IC-06 20 43058177 43058177 C T HNF4A Missense_Mutation p.P433S 0.33 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-DA-A1IC-06 20 44037156 44037156 C T DBNDD2 Missense_Mutation p.R119W 0.42 deleterious(0.01) benign(0.339) TCGA-DA-A1IC-06 20 45003020 45003020 G A ELMO2 Silent p.A410A 0.30 TCGA-DA-A1IC-06 20 46280002 46280002 C T NCOA3 Missense_Mutation p.P1310S 0.28 tolerated(0.23) benign(0.034) TCGA-DA-A1IC-06 20 48140776 48140776 C T PTGIS Missense_Mutation p.G225E 0.40 tolerated(1) benign(0.028) TCGA-DA-A1IC-06 20 48160839 48160839 C T PTGIS Intron 0.33 TCGA-DA-A1IC-06 20 49575365 49575365 C T MOCS3 5'UTR 0.29 TCGA-DA-A1IC-06 20 51871822 51871822 G A TSHZ2 Missense_Mutation p.E609K 0.25 tolerated(0.86) benign(0.019) TCGA-DA-A1IC-06 20 5283061 5283061 C T PROKR2 Silent p.T260T 0.37 TCGA-DA-A1IC-06 20 56227489 56227489 G A PMEPA1 Nonsense_Mutation p.Q162* 0.33 TCGA-DA-A1IC-06 20 60485547 60485547 C G CDH4 Missense_Mutation p.Q420E 0.28 tolerated(0.21) benign(0.082) TCGA-DA-A1IC-06 20 60902993 60902993 G A LAMA5 Missense_Mutation p.P1576S 0.38 probably_damaging(0.998) TCGA-DA-A1IC-06 20 61453106 61453106 C T COL9A3 Intron 0.33 TCGA-DA-A1IC-06 20 61929325 61929325 C T COL20A1 Missense_Mutation p.S49L 0.33 tolerated(0.14) benign(0.031) TCGA-DA-A1IC-06 20 62724125 62724125 C T OPRL1 Missense_Mutation p.L18F 0.34 tolerated(0.27) benign(0.004) TCGA-DA-A1IC-06 20 62737657 62737657 G A NPBWR2 Silent p.V176V 0.18 TCGA-DA-A1IC-06 20 6759539 6759539 C T BMP2 Missense_Mutation p.P332S 0.33 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IC-06 20 741707 741707 G A SLC52A3 Missense_Mutation p.S458L 0.36 tolerated(0.16) benign(0.029) TCGA-DA-A1IC-06 21 14982936 14982936 G A POTED Missense_Mutation p.M129I 0.38 tolerated(0.23) benign(0.043) TCGA-DA-A1IC-06 21 18937938 18937938 C T CXADR Silent p.A342A 0.38 TCGA-DA-A1IC-06 21 19715949 19715949 G A TMPRSS15 Silent p.V434V 0.34 TCGA-DA-A1IC-06 21 33057964 33057964 G A SCAF4 Missense_Mutation p.P709L 0.38 unknown(0) TCGA-DA-A1IC-06 21 34619116 34619116 C T IFNAR2 Silent p.A105A 0.26 TCGA-DA-A1IC-06 21 36081686 36081686 G A CLIC6 Silent p.R583R 0.37 TCGA-DA-A1IC-06 21 38098456 38098456 T C SIM2 Missense_Mutation p.Y194H 0.26 deleterious(0.02) possibly_damaging(0.88) TCGA-DA-A1IC-06 21 38534350 38534350 C T TTC3 Missense_Mutation p.S1052L 0.47 tolerated(0.67) benign(0.004) TCGA-DA-A1IC-06 21 40191432 40191432 C T ETS2 Missense_Mutation p.P273S 0.40 tolerated(0.4) benign(0.069) TCGA-DA-A1IC-06 21 41424009 41424009 C T DSCAM Silent p.T1687T 0.30 TCGA-DA-A1IC-06 21 43309253 43309253 G A C2CD2 Missense_Mutation p.P691S 0.29 tolerated(0.59) benign(0.11) TCGA-DA-A1IC-06 21 46226855 46226855 G A SUMO3 3'UTR 0.17 TCGA-DA-A1IC-06 21 46685454 46685454 G A POFUT2 Silent p.F411F 0.38 TCGA-DA-A1IC-06 21 47546096 47546096 C T COL6A2 Silent p.F789F 0.35 TCGA-DA-A1IC-06 21 47744140 47744140 G A PCNT 5'UTR 0.29 TCGA-DA-A1IC-06 21 47805772 47805772 G A PCNT Missense_Mutation p.S1113N 0.42 possibly_damaging(0.483) TCGA-DA-A1IC-06 22 18382276 18382276 T G MICAL3 Missense_Mutation p.T296P 0.32 probably_damaging(0.999) TCGA-DA-A1IC-06 22 19709347 19709347 G A SEPT5 Missense_Mutation p.E273K 0.33 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 22 20825682 20825682 G A KLHL22 Silent p.S116S 0.42 TCGA-DA-A1IC-06 22 21385910 21385910 C T SLC7A4 Silent p.K64K 0.20 TCGA-DA-A1IC-06 22 22065004 22065004 G A YPEL1 Silent p.F10F 0.30 TCGA-DA-A1IC-06 22 22682096 22682096 C T IGLV1-50 Missense_Mutation p.S93F 0.38 deleterious_low_confidence(0) benign(0.072) TCGA-DA-A1IC-06 22 23047192 23047192 C T IGLV3-22 Missense_Mutation p.P77L 0.47 deleterious(0.02) benign(0.324) TCGA-DA-A1IC-06 22 23162143 23162143 G A IGLV3-9 Missense_Mutation p.R79Q 0.33 deleterious(0.04) benign(0.338) TCGA-DA-A1IC-06 22 24217312 24217312 C T AP000350.10 Missense_Mutation p.S62F 0.33 deleterious(0) probably_damaging(0.956) TCGA-DA-A1IC-06 22 24456409 24456409 C T CABIN1 Silent p.F474F 0.31 TCGA-DA-A1IC-06 22 24919669 24919669 C T UPB1 Silent p.S333S 0.45 TCGA-DA-A1IC-06 22 24919670 24919670 C T UPB1 Missense_Mutation p.R334W 0.46 deleterious(0) possibly_damaging(0.485) TCGA-DA-A1IC-06 22 26388449 26388449 G A MYO18B Missense_Mutation p.D2093N 0.43 tolerated(0.32) possibly_damaging(0.897) TCGA-DA-A1IC-06 22 26423113 26423113 G A MYO18B Silent p.V2391V 0.39 TCGA-DA-A1IC-06 22 26736599 26736599 G A SEZ6L Splice_Site p.X738_splice 0.37 TCGA-DA-A1IC-06 22 32193655 32193655 C T DEPDC5 Silent p.I279I 0.27 TCGA-DA-A1IC-06 22 32753933 32753933 A G RFPL3 5'UTR 0.31 TCGA-DA-A1IC-06 22 36661318 36661318 C T APOL1 Missense_Mutation p.R162W 0.38 deleterious(0.05) probably_damaging(0.932) TCGA-DA-A1IC-06 22 37333888 37333888 G A CSF2RB Missense_Mutation p.G680R 0.47 tolerated(0.12) benign(0.043) TCGA-DA-A1IC-06 22 37420687 37420687 C T MPST Missense_Mutation p.S164F 0.19 deleterious(0) benign(0.368) TCGA-DA-A1IC-06 22 39117758 39117758 T C GTPBP1 Silent p.N282N 0.31 TCGA-DA-A1IC-06 22 39222732 39222732 G A NPTXR Missense_Mutation p.P291S 0.35 deleterious(0.03) probably_damaging(0.915) TCGA-DA-A1IC-06 22 39357541 39357541 G A APOBEC3A Silent p.G108G 0.46 TCGA-DA-A1IC-06 22 39966992 39966992 C T CACNA1I Missense_Mutation p.P79S 0.27 deleterious(0.05) benign(0.37) TCGA-DA-A1IC-06 22 41173122 41173122 C A SLC25A17 Silent p.V205V 0.26 TCGA-DA-A1IC-06 22 41244318 41244318 G A ST13 Missense_Mutation p.S75L 0.29 tolerated(0.1) benign(0.005) TCGA-DA-A1IC-06 22 42059847 42059847 C T XRCC6 3'UTR 0.44 TCGA-DA-A1IC-06 22 42059848 42059848 C T XRCC6 3'UTR 0.46 TCGA-DA-A1IC-06 22 43218307 43218307 G A ARFGAP3 Silent p.L261L 0.42 TCGA-DA-A1IC-06 22 43524620 43524620 C T BIK Missense_Mutation p.P127S 0.40 tolerated(0.28) benign(0.002) TCGA-DA-A1IC-06 22 45218332 45218332 C T ARHGAP8 Silent p.I278I 0.38 TCGA-DA-A1IC-06 22 45218333 45218333 C T ARHGAP8 Missense_Mutation p.P279S 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-DA-A1IC-06 22 46794452 46794452 G A CELSR1 Missense_Mutation p.S1832F 0.35 deleterious(0.02) possibly_damaging(0.752) TCGA-DA-A1IC-06 22 51012817 51012817 G A CPT1B Missense_Mutation p.S306F 0.37 deleterious(0) possibly_damaging(0.892) TCGA-DA-A1IC-06 2 101014572 101014572 G A CHST10 Silent p.L75L 0.35 TCGA-DA-A1IC-06 2 102499089 102499089 G A MAP4K4 Silent p.E1009E 0.38 TCGA-DA-A1IC-06 2 102955374 102955374 G A IL1RL1 Missense_Mutation p.D47N 0.43 tolerated(0.1) probably_damaging(0.924) TCGA-DA-A1IC-06 2 103141589 103141589 G A SLC9A4 Missense_Mutation p.G642D 0.35 tolerated(0.21) probably_damaging(0.935) TCGA-DA-A1IC-06 2 108487290 108487290 G A RGPD4 Missense_Mutation p.D944N 0.34 tolerated(0.12) benign(0.05) TCGA-DA-A1IC-06 2 109288820 109288820 A C LIMS1 Missense_Mutation p.N150T 0.25 tolerated(0.1) possibly_damaging(0.731) TCGA-DA-A1IC-06 2 118588242 118588242 C T DDX18 Missense_Mutation p.S652F 0.36 deleterious(0.05) possibly_damaging(0.665) TCGA-DA-A1IC-06 2 119752064 119752064 G A MARCO Missense_Mutation p.E511K 0.40 deleterious(0.04) unknown(0) TCGA-DA-A1IC-06 2 125555887 125555887 C T CNTNAP5 Silent p.L1068L 0.36 TCGA-DA-A1IC-06 2 131127711 131127711 G A PTPN18 Missense_Mutation p.E213K 0.32 tolerated(0.49) benign(0.046) TCGA-DA-A1IC-06 2 131519712 131519712 G A AMER3 Missense_Mutation p.D23N 0.29 tolerated(0.43) benign(0.367) TCGA-DA-A1IC-06 2 131976120 131976120 C T POTEE Missense_Mutation p.H49Y 0.36 deleterious_low_confidence(0) benign(0.001) TCGA-DA-A1IC-06 2 132240254 132240254 G A TUBA3D Missense_Mutation p.D396N 0.19 deleterious_low_confidence(0.01) benign(0.014) TCGA-DA-A1IC-06 2 135711938 135711938 C T CCNT2 Missense_Mutation p.S638F 0.35 deleterious(0) probably_damaging(0.993) TCGA-DA-A1IC-06 2 136437804 136437804 T C R3HDM1 Missense_Mutation p.F755S 0.32 deleterious(0) benign(0.112) TCGA-DA-A1IC-06 2 141260595 141260595 C T LRP1B Missense_Mutation p.G2867R 0.25 probably_damaging(0.988) TCGA-DA-A1IC-06 2 141707969 141707969 C T LRP1B Missense_Mutation p.D991N 0.40 probably_damaging(0.973) TCGA-DA-A1IC-06 2 152698471 152698471 C T CACNB4 Silent p.R416R 0.31 TCGA-DA-A1IC-06 2 153475648 153475648 C T FMNL2 Missense_Mutation p.P535S 0.38 benign(0.118) TCGA-DA-A1IC-06 2 1544387 1544387 C T TPO Silent p.S880S 0.35 TCGA-DA-A1IC-06 2 15614372 15614372 G A NBAS Missense_Mutation p.S473F 0.35 deleterious(0.01) possibly_damaging(0.681) TCGA-DA-A1IC-06 2 158115237 158115237 G A GALNT5 Missense_Mutation p.D215N 0.36 tolerated_low_confidence(0.58) benign(0.001) TCGA-DA-A1IC-06 2 162273514 162273514 G A TBR1 Missense_Mutation p.G198E 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-DA-A1IC-06 2 163253266 163253266 C T KCNH7 Missense_Mutation p.R866K 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-DA-A1IC-06 2 166011109 166011109 G A SCN3A Silent p.G411G 0.33 TCGA-DA-A1IC-06 2 166786257 166786257 C T TTC21B Missense_Mutation p.G363E 0.38 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 2 166786258 166786258 C T TTC21B Splice_Site p.X363_splice 0.37 TCGA-DA-A1IC-06 2 166900468 166900468 C T SCN1A Missense_Mutation p.G585E 0.33 tolerated(0.06) possibly_damaging(0.741) TCGA-DA-A1IC-06 2 170048526 170048526 C T LRP2 Missense_Mutation p.D2950N 0.36 benign(0.001) TCGA-DA-A1IC-06 2 170592479 170592479 G A KLHL23 Missense_Mutation p.G319R 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 2 172926242 172926242 C T METAP1D Silent p.F19F 0.40 TCGA-DA-A1IC-06 2 175612768 175612768 G A CHRNA1 3'UTR 0.36 TCGA-DA-A1IC-06 2 179424178 179424178 G A TTN Missense_Mutation p.S28894F 0.31 TCGA-DA-A1IC-06 2 179424620 179424620 C T TTN Missense_Mutation p.E28747K 0.30 TCGA-DA-A1IC-06 2 179437206 179437206 G A TTN Silent p.I24551I 0.30 TCGA-DA-A1IC-06 2 179455117 179455117 G A TTN Silent p.F20445F 0.33 TCGA-DA-A1IC-06 2 179456111 179456111 G A TTN Missense_Mutation p.T20114I 0.35 TCGA-DA-A1IC-06 2 179462333 179462333 C T TTN Missense_Mutation p.G19159D 0.42 TCGA-DA-A1IC-06 2 179497937 179497937 C T TTN Missense_Mutation p.G14355R 0.36 TCGA-DA-A1IC-06 2 179558399 179558399 C T TTN Missense_Mutation p.E10511K 0.34 TCGA-DA-A1IC-06 2 179613571 179613571 G T TTN Intron 0.39 TCGA-DA-A1IC-06 2 179615321 179615321 G A TTN Intron 0.21 TCGA-DA-A1IC-06 2 179616458 179616458 C T TTN Intron 0.46 TCGA-DA-A1IC-06 2 179621235 179621235 C T TTN Silent p.T3656T 0.31 TCGA-DA-A1IC-06 2 182347248 182347248 C T ITGA4 Missense_Mutation p.S304L 0.29 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 2 182412563 182412563 C T CERKL Missense_Mutation p.G408E 0.40 tolerated(0.32) benign(0.003) TCGA-DA-A1IC-06 2 182767010 182767010 T C SSFA2 Silent p.S410S 0.36 TCGA-DA-A1IC-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.38 deleterious(0) probably_damaging(0.961) TCGA-DA-A1IC-06 2 185803067 185803067 G A ZNF804A Missense_Mutation p.G982R 0.35 tolerated(0.13) probably_damaging(0.998) TCGA-DA-A1IC-06 2 187698678 187698678 G A ZSWIM2 Missense_Mutation p.R275C 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 2 191792205 191792205 C T GLS Silent p.F474F 0.25 TCGA-DA-A1IC-06 2 196545000 196545000 C T SLC39A10 Silent p.S78S 0.38 TCGA-DA-A1IC-06 2 196722234 196722234 G A DNAH7 Missense_Mutation p.P2761S 0.31 tolerated(0.06) possibly_damaging(0.812) TCGA-DA-A1IC-06 2 201853036 201853036 G A FAM126B Missense_Mutation p.R314W 0.43 deleterious(0.01) benign(0.027) TCGA-DA-A1IC-06 2 202494496 202494496 G A TMEM237 Silent p.S211S 0.31 TCGA-DA-A1IC-06 2 202609105 202609105 G A ALS2 Silent p.A682A 0.27 TCGA-DA-A1IC-06 2 206480476 206480476 A T PARD3B Missense_Mutation p.D1124V 0.39 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 2 206480477 206480477 C T PARD3B Silent p.D1124D 0.40 TCGA-DA-A1IC-06 2 210517993 210517993 T G MAP2 Missense_Mutation p.D33E 0.37 tolerated_low_confidence(0.6) benign(0.047) TCGA-DA-A1IC-06 2 210559961 210559961 C T MAP2 Missense_Mutation p.P1023S 0.43 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-DA-A1IC-06 2 216197195 216197195 C T ATIC Missense_Mutation p.P260L 0.35 deleterious(0) probably_damaging(0.942) TCGA-DA-A1IC-06 2 219294156 219294156 C T VIL1 Missense_Mutation p.A239V 0.41 deleterious(0.04) benign(0.101) TCGA-DA-A1IC-06 2 219617635 219617635 A T TTLL4 Silent p.P1042P 0.11 TCGA-DA-A1IC-06 2 220103065 220103065 G A GLB1L Silent p.Y416Y 0.29 TCGA-DA-A1IC-06 2 220355185 220355185 C T SPEG Silent p.F2992F 0.51 TCGA-DA-A1IC-06 2 220467489 220467489 A G STK11IP Silent p.G214G 0.27 TCGA-DA-A1IC-06 2 231253338 231253338 C T SP140L Silent p.V283V 0.39 TCGA-DA-A1IC-06 2 234357995 234357995 C T DGKD Missense_Mutation p.R621C 0.54 deleterious(0) possibly_damaging(0.59) TCGA-DA-A1IC-06 2 234591146 234591146 C T UGT1A7 Missense_Mutation p.S188F 0.34 deleterious(0) possibly_damaging(0.734) TCGA-DA-A1IC-06 2 240929547 240929547 G A NDUFA10 Missense_Mutation p.P315S 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 2 241078633 241078633 G A OTOS Missense_Mutation p.P75L 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 2 241835039 241835039 C T C2orf54 Missense_Mutation p.E126K 0.34 tolerated(0.52) benign(0.021) TCGA-DA-A1IC-06 2 242149733 242149733 C T ANO7 Silent p.L515L 0.29 TCGA-DA-A1IC-06 2 26680833 26680833 G A OTOF 3'UTR 0.21 TCGA-DA-A1IC-06 2 27016180 27016180 C T CENPA 3'UTR 0.46 TCGA-DA-A1IC-06 2 29366576 29366576 A T CLIP4 Missense_Mutation p.N217I 0.25 deleterious(0) probably_damaging(0.988) TCGA-DA-A1IC-06 2 29451860 29451860 C T ALK Missense_Mutation p.G902E 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 2 29451861 29451861 C T ALK Missense_Mutation p.G902R 0.17 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IC-06 2 31591431 31591431 T C XDH Silent p.E692E 0.33 TCGA-DA-A1IC-06 2 33477784 33477784 C T LTBP1 Silent p.Y680Y 0.39 TCGA-DA-A1IC-06 2 36668611 36668611 G A CRIM1 Missense_Mutation p.G239E 0.36 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 2 39090588 39090588 T C DHX57 Missense_Mutation p.T100A 0.38 tolerated(0.18) possibly_damaging(0.528) TCGA-DA-A1IC-06 2 46237610 46237610 G A PRKCE Missense_Mutation p.R464Q 0.35 tolerated(0.5) benign(0.076) TCGA-DA-A1IC-06 2 47710061 47710061 C T MSH2 Silent p.I926I 0.30 TCGA-DA-A1IC-06 2 55254463 55254463 C T RTN4 Missense_Mutation p.V258I 0.44 tolerated(0.08) benign(0.01) TCGA-DA-A1IC-06 2 61709610 61709610 A G XPO1 Silent p.S959S 0.54 TCGA-DA-A1IC-06 2 62069262 62069262 A G FAM161A Silent p.S139S 0.33 TCGA-DA-A1IC-06 2 66796153 66796153 C T MEIS1 Intron 0.46 TCGA-DA-A1IC-06 2 68622819 68622819 G C PLEK Missense_Mutation p.K308N 0.31 tolerated(0.18) benign(0.16) TCGA-DA-A1IC-06 2 71058882 71058882 C T CD207 Silent p.G262G 0.36 TCGA-DA-A1IC-06 2 71838413 71838413 G A DYSF Silent p.R1332R 0.38 TCGA-DA-A1IC-06 2 74699807 74699807 G A MRPL53 5'UTR 0.50 TCGA-DA-A1IC-06 2 88384003 88384003 G A SMYD1 Silent p.E102E 0.44 TCGA-DA-A1IC-06 2 89326909 89326909 G A IGKV3-11 Missense_Mutation p.P35L 0.30 tolerated(0.4) benign(0.124) TCGA-DA-A1IC-06 2 90249242 90249242 T C IGKV1D-43 Silent p.P66P 0.43 TCGA-DA-A1IC-06 2 95519289 95519289 C T ANKRD20A8P RNA 0.27 TCGA-DA-A1IC-06 2 96789943 96789943 C T ASTL Silent p.E314E 0.38 TCGA-DA-A1IC-06 2 96789944 96789944 T A ASTL Missense_Mutation p.E314V 0.34 deleterious_low_confidence(0.01) benign(0.164) TCGA-DA-A1IC-06 2 96957528 96957528 G A SNRNP200 Silent p.A757A 0.30 TCGA-DA-A1IC-06 3 101090866 101090866 T C SENP7 Missense_Mutation p.D261G 0.30 deleterious(0.01) possibly_damaging(0.839) TCGA-DA-A1IC-06 3 108295144 108295144 C T KIAA1524 Missense_Mutation p.G290R 0.34 deleterious(0.05) benign(0.237) TCGA-DA-A1IC-06 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 3 11059122 11059122 G A SLC6A1 Silent p.G75G 0.30 TCGA-DA-A1IC-06 3 11302250 11302250 G A HRH1 3'UTR 0.34 TCGA-DA-A1IC-06 3 113212092 113212092 G C SPICE1 Missense_Mutation p.I151M 0.25 tolerated(0.23) benign(0.233) TCGA-DA-A1IC-06 3 113784185 113784185 C T QTRTD1 Silent p.T39T 0.30 TCGA-DA-A1IC-06 3 11643403 11643403 G A VGLL4 Missense_Mutation p.P59L 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 11643404 11643404 G A VGLL4 Missense_Mutation p.P59S 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 118865748 118865748 C T C3orf30 Missense_Mutation p.P238S 0.38 tolerated(0.25) benign(0.199) TCGA-DA-A1IC-06 3 120424951 120424951 G A RABL3 Silent p.F93F 0.40 TCGA-DA-A1IC-06 3 121097730 121097730 G A STXBP5L Missense_Mutation p.E806K 0.42 tolerated(0.85) benign(0.001) TCGA-DA-A1IC-06 3 121340369 121340369 C T FBXO40 Silent p.T31T 0.36 TCGA-DA-A1IC-06 3 121554156 121554156 A T EAF2 Silent p.S8S 0.35 TCGA-DA-A1IC-06 3 121634164 121634164 G A SLC15A2 Missense_Mutation p.G207R 0.41 deleterious(0) probably_damaging(0.988) TCGA-DA-A1IC-06 3 121658238 121658238 C T SLC15A2 Missense_Mutation p.P602S 0.41 tolerated(0.6) benign(0.002) TCGA-DA-A1IC-06 3 121822563 121822563 C T CD86 Missense_Mutation p.S90L 0.40 tolerated(0.17) benign(0.003) TCGA-DA-A1IC-06 3 121980560 121980560 C T CASR Silent p.F226F 0.42 TCGA-DA-A1IC-06 3 122274910 122274910 G A PARP9 Silent p.F71F 0.32 TCGA-DA-A1IC-06 3 124997999 124998000 AT - ZNF148 Frame_Shift_Del p.Y184Sfs*12 0.25 TCGA-DA-A1IC-06 3 126226912 126226912 C T UROC1 Silent p.S146S 0.34 TCGA-DA-A1IC-06 3 127334776 127334776 C A MCM2 Missense_Mutation p.F500L 0.37 deleterious(0.02) possibly_damaging(0.521) TCGA-DA-A1IC-06 3 128292057 128292057 T C C3orf27 3'UTR 0.27 TCGA-DA-A1IC-06 3 139062825 139062825 G A MRPS22 5'UTR 0.30 TCGA-DA-A1IC-06 3 139076710 139076710 C T COPB2 Missense_Mutation p.D906N 0.42 deleterious_low_confidence(0) benign(0.11) TCGA-DA-A1IC-06 3 140407033 140407033 C T TRIM42 Silent p.S503S 0.37 TCGA-DA-A1IC-06 3 141291471 141291471 G A RASA2 Missense_Mutation p.R397K 0.33 deleterious(0) probably_damaging(0.996) TCGA-DA-A1IC-06 3 14199529 14199529 C T XPC Silent p.E618E 0.10 TCGA-DA-A1IC-06 3 148459575 148459575 T A AGTR1 Missense_Mutation p.F251L 0.40 tolerated(1) benign(0.018) TCGA-DA-A1IC-06 3 149220492 149220492 G A TM4SF4 3'UTR 0.31 TCGA-DA-A1IC-06 3 150645673 150645673 G A CLRN1 3'Flank 0.47 TCGA-DA-A1IC-06 3 151171402 151171402 C T IGSF10 Missense_Mutation p.G162E 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 151535366 151535366 G A AADAC Silent p.V117V 0.30 TCGA-DA-A1IC-06 3 15452786 15452786 G A METTL6 Silent p.L278L 0.19 TCGA-DA-A1IC-06 3 16252733 16252733 C T GALNT15 Silent p.L394L 0.30 TCGA-DA-A1IC-06 3 164906415 164906415 G A SLITRK3 Missense_Mutation p.P735L 0.35 deleterious(0.03) benign(0.024) TCGA-DA-A1IC-06 3 167159904 167159904 G A SERPINI2 Missense_Mutation p.S404L 0.21 tolerated(0.07) probably_damaging(0.922) TCGA-DA-A1IC-06 3 167246950 167246950 C T WDR49 Missense_Mutation p.E414K 0.36 deleterious(0.02) possibly_damaging(0.656) TCGA-DA-A1IC-06 3 170858230 170858230 C T TNIK Silent p.Q430Q 0.34 TCGA-DA-A1IC-06 3 173993129 173993129 C T NLGN1 Missense_Mutation p.A224V 0.41 deleterious(0.03) probably_damaging(0.981) TCGA-DA-A1IC-06 3 182554169 182554169 C T ATP11B Missense_Mutation p.P155S 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 183774074 183774074 C T HTR3C Missense_Mutation p.S130F 0.35 tolerated(1) benign(0.031) TCGA-DA-A1IC-06 3 184005631 184005631 G A ECE2 Missense_Mutation p.V542M 0.31 tolerated(0.16) benign(0.005) TCGA-DA-A1IC-06 3 184008850 184008850 G A ECE2 Silent p.G737G 0.20 TCGA-DA-A1IC-06 3 184298565 184298565 C T EPHB3 Missense_Mutation p.R813W 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 186370139 186370139 C T FETUB Missense_Mutation p.P290S 0.28 tolerated(0.32) benign(0.003) TCGA-DA-A1IC-06 3 186953452 186953452 C T MASP1 3'UTR 0.55 TCGA-DA-A1IC-06 3 187416463 187416463 G C RTP2 Silent p.P167P 0.35 TCGA-DA-A1IC-06 3 188956652 188956652 C T TPRG1 Missense_Mutation p.R145C 0.43 deleterious(0.03) benign(0.04) TCGA-DA-A1IC-06 3 195493606 195493606 C T MUC4 Missense_Mutation p.E4516K 0.51 benign(0.299) TCGA-DA-A1IC-06 3 26751332 26751332 G A LRRC3B Missense_Mutation p.E57K 0.29 tolerated(0.07) probably_damaging(0.946) TCGA-DA-A1IC-06 3 27385792 27385792 G A NEK10 Silent p.T111T 0.40 TCGA-DA-A1IC-06 3 32200531 32200531 C T GPD1L Missense_Mutation p.A261V 0.37 deleterious(0) probably_damaging(0.937) TCGA-DA-A1IC-06 3 35770831 35770831 C T ARPP21 Missense_Mutation p.S387L 0.36 deleterious(0) benign(0.163) TCGA-DA-A1IC-06 3 38173488 38173488 G A ACAA1 Missense_Mutation p.P111L 0.41 deleterious(0) probably_damaging(0.996) TCGA-DA-A1IC-06 3 38278449 38278449 C T OXSR1 Silent p.L357L 0.33 TCGA-DA-A1IC-06 3 38622599 38622599 C T SCN5A Silent p.E1017E 0.43 TCGA-DA-A1IC-06 3 38739881 38739881 G A SCN10A Silent p.I1610I 0.45 TCGA-DA-A1IC-06 3 38793931 38793931 G A SCN10A Nonsense_Mutation p.R512* 0.41 TCGA-DA-A1IC-06 3 38888478 38888478 C T SCN11A Missense_Mutation p.G1695S 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 3 42727633 42727633 G A KLHL40 Missense_Mutation p.D175N 0.47 tolerated(1) benign(0.142) TCGA-DA-A1IC-06 3 44496777 44496777 G A ZNF445 Missense_Mutation p.L89F 0.23 tolerated(0.07) possibly_damaging(0.849) TCGA-DA-A1IC-06 3 44612222 44612222 C T ZKSCAN7 Silent p.D540D 0.49 TCGA-DA-A1IC-06 3 44943397 44943397 C T TGM4 Silent p.I315I 0.28 TCGA-DA-A1IC-06 3 45943373 45943373 G A CCR9 Missense_Mutation p.G365R 0.32 deleterious(0.02) benign(0.398) TCGA-DA-A1IC-06 3 45943374 45943374 G A CCR9 Missense_Mutation p.G365E 0.32 deleterious(0.04) benign(0.221) TCGA-DA-A1IC-06 3 46399759 46399759 C T CCR2 Silent p.T247T 0.40 TCGA-DA-A1IC-06 3 46414630 46414630 C T CCR5 Silent p.F79F 0.34 TCGA-DA-A1IC-06 3 46939393 46939393 G A PTH1R Missense_Mutation p.G121E 0.43 deleterious(0) probably_damaging(0.994) TCGA-DA-A1IC-06 3 48642089 48642089 G A UQCRC1 Missense_Mutation p.P141L 0.48 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 3 48666117 48666117 G A SLC26A6 Missense_Mutation p.R544C 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-DA-A1IC-06 3 48679376 48679376 G A CELSR3 Missense_Mutation p.S2911L 0.30 deleterious(0.03) benign(0.007) TCGA-DA-A1IC-06 3 48679377 48679377 A C CELSR3 Missense_Mutation p.S2911A 0.30 deleterious(0.02) benign(0.142) TCGA-DA-A1IC-06 3 48690561 48690561 G A CELSR3 Silent p.L1836L 0.32 TCGA-DA-A1IC-06 3 49158581 49158581 G - LAMB2 3'UTR 0.36 TCGA-DA-A1IC-06 3 49158583 49158583 G A LAMB2 3'UTR 0.36 TCGA-DA-A1IC-06 3 50155851 50155851 C T RBM5 Missense_Mutation p.R804W 0.24 deleterious(0) probably_damaging(0.975) TCGA-DA-A1IC-06 3 50225311 50225311 C T SEMA3F Silent p.F707F 0.18 TCGA-DA-A1IC-06 3 52476769 52476769 G A SEMA3G Silent p.P90P 0.40 TCGA-DA-A1IC-06 3 53787613 53787613 C T CACNA1D Silent p.S1250S 0.35 TCGA-DA-A1IC-06 3 53835248 53835248 C T CACNA1D Missense_Mutation p.S1755L 0.39 deleterious_low_confidence(0.03) benign(0.023) TCGA-DA-A1IC-06 3 56807811 56807811 G A ARHGEF3 Nonsense_Mutation p.R76* 0.32 TCGA-DA-A1IC-06 3 73016791 73016791 C T GXYLT2 Missense_Mutation p.S357F 0.42 tolerated(0.76) probably_damaging(0.999) TCGA-DA-A1IC-06 3 77599980 77599980 C T ROBO2 Silent p.F373F 0.32 TCGA-DA-A1IC-06 3 78796020 78796020 G A ROBO1 Missense_Mutation p.S177L 0.34 tolerated(0.13) benign(0.228) TCGA-DA-A1IC-06 3 9490114 9490114 G A SETD5 Missense_Mutation p.E716K 0.37 deleterious(0.05) possibly_damaging(0.725) TCGA-DA-A1IC-06 3 9754748 9754748 A C CPNE9 Missense_Mutation p.N212T 0.27 deleterious(0.03) probably_damaging(0.947) TCGA-DA-A1IC-06 3 97726706 97726706 C T GABRR3 Intron 0.38 TCGA-DA-A1IC-06 3 9798644 9798644 C T OGG1 Intron 0.45 TCGA-DA-A1IC-06 3 98300346 98300346 T C CPOX Silent p.E394E 0.34 TCGA-DA-A1IC-06 3 99513870 99513870 G A COL8A1 Silent p.G375G 0.26 TCGA-DA-A1IC-06 4 100756871 100756871 G A DAPP1 Missense_Mutation p.E65K 0.44 tolerated(0.5) benign(0.018) TCGA-DA-A1IC-06 4 104063017 104063017 C T CENPE Missense_Mutation p.E1785K 0.40 possibly_damaging(0.459) TCGA-DA-A1IC-06 4 104080165 104080165 A G CENPE Splice_Site p.X867_splice 0.30 TCGA-DA-A1IC-06 4 107847039 107847039 G A DKK2 Missense_Mutation p.S97L 0.39 tolerated(0.63) benign(0.025) TCGA-DA-A1IC-06 4 111398175 111398175 G A ENPEP Missense_Mutation p.G202E 0.37 deleterious(0) probably_damaging(0.991) TCGA-DA-A1IC-06 4 114277530 114277530 G A ANK2 Missense_Mutation p.E2586K 0.36 probably_damaging(0.999) TCGA-DA-A1IC-06 4 115767138 115767138 G A NDST4 Silent p.F652F 0.29 TCGA-DA-A1IC-06 4 122059830 122059830 G A TNIP3 Intron 0.30 TCGA-DA-A1IC-06 4 122831542 122831542 C T TRPC3 Missense_Mutation p.G520E 0.33 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 4 134073035 134073035 G T PCDH10 Silent p.G580G 0.39 TCGA-DA-A1IC-06 4 145038032 145038032 G A GYPA Missense_Mutation p.S111F 0.37 deleterious(0.01) benign(0.189) TCGA-DA-A1IC-06 4 152053487 152053487 G A SH3D19 Missense_Mutation p.S656F 0.28 tolerated(0.2) benign(0.265) TCGA-DA-A1IC-06 4 153897236 153897236 C T FHDC1 Silent p.P931P 0.27 TCGA-DA-A1IC-06 4 155253658 155253658 T C DCHS2 Silent p.G735G 0.39 TCGA-DA-A1IC-06 4 155253659 155253659 C A DCHS2 Missense_Mutation p.G735V 0.39 deleterious(0) probably_damaging(0.955) TCGA-DA-A1IC-06 4 155253660 155253660 C T DCHS2 Missense_Mutation p.G735R 0.40 deleterious(0.04) benign(0.216) TCGA-DA-A1IC-06 4 167663158 167663158 C T SPOCK3 Silent p.K331K 0.30 TCGA-DA-A1IC-06 4 169108603 169108603 G A ANXA10 3'UTR 0.53 TCGA-DA-A1IC-06 4 169208310 169208310 A T DDX60 Missense_Mutation p.Y410N 0.28 tolerated(0.15) benign(0.045) TCGA-DA-A1IC-06 4 17805290 17805290 C T DCAF16 Missense_Mutation p.A159T 0.39 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-DA-A1IC-06 4 183664415 183664415 A G TENM3 Missense_Mutation p.I1158V 0.27 tolerated(0.24) benign(0.002) TCGA-DA-A1IC-06 4 183676209 183676209 C T TENM3 Silent p.T1563T 0.42 TCGA-DA-A1IC-06 4 183713613 183713613 G A TENM3 Missense_Mutation p.E1930K 0.41 tolerated(0.06) possibly_damaging(0.651) TCGA-DA-A1IC-06 4 184241091 184241091 C T CLDN22 Missense_Mutation p.G94D 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 4 186299432 186299432 C T LRP2BP 5'UTR 0.33 TCGA-DA-A1IC-06 4 189065010 189065010 G A TRIML1 Missense_Mutation p.E252K 0.34 tolerated(0.37) benign(0.017) TCGA-DA-A1IC-06 4 189068196 189068196 G A TRIML1 Silent p.K359K 0.33 TCGA-DA-A1IC-06 4 24543617 24543617 G A DHX15 Missense_Mutation p.S455F 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 4 2692478 2692478 C T FAM193A Missense_Mutation p.P571S 0.29 tolerated(0.12) probably_damaging(0.994) TCGA-DA-A1IC-06 4 3451138 3451138 C T HGFAC Missense_Mutation p.P654S 0.34 tolerated_low_confidence(0.09) benign(0.047) TCGA-DA-A1IC-06 4 36212031 36212031 C T ARAP2 Missense_Mutation p.D490N 0.26 deleterious(0) probably_damaging(0.971) TCGA-DA-A1IC-06 4 38798375 38798375 G A TLR1 Missense_Mutation p.S693F 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 4 39230141 39230141 C T WDR19 Missense_Mutation p.P605S 0.33 deleterious(0.02) possibly_damaging(0.452) TCGA-DA-A1IC-06 4 40936678 40936678 T C APBB2 Silent p.L382L 0.57 TCGA-DA-A1IC-06 4 47593444 47593444 G A ATP10D 3'UTR 0.23 TCGA-DA-A1IC-06 4 47625718 47625718 C T CORIN Missense_Mutation p.G804R 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 4 47746427 47746427 C T CORIN Missense_Mutation p.G264E 0.42 tolerated(0.28) benign(0.162) TCGA-DA-A1IC-06 4 47746428 47746428 C T CORIN Missense_Mutation p.G264R 0.44 tolerated(0.05) possibly_damaging(0.888) TCGA-DA-A1IC-06 4 47886451 47886451 G T NFXL1 Missense_Mutation p.Q610K 0.47 tolerated(0.37) benign(0.007) TCGA-DA-A1IC-06 4 5570324 5570324 G A EVC2 Missense_Mutation p.P1135L 0.33 deleterious(0) possibly_damaging(0.743) TCGA-DA-A1IC-06 4 55953871 55953871 C T KDR Missense_Mutation p.D1189N 0.43 tolerated(0.05) probably_damaging(0.909) TCGA-DA-A1IC-06 4 57891066 57891066 G C POLR2B Missense_Mutation p.K993N 0.38 tolerated(0.31) possibly_damaging(0.561) TCGA-DA-A1IC-06 4 65180440 65180440 G A TECRL Silent p.L159L 0.31 TCGA-DA-A1IC-06 4 69519938 69519938 C T UGT2B15 Missense_Mutation p.G377E 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IC-06 4 70504643 70504643 C T UGT2A2 Nonsense_Mutation p.W239* 0.50 TCGA-DA-A1IC-06 4 71347158 71347158 G A MUC7 Missense_Mutation p.E233K 0.28 tolerated(0.21) unknown(0) TCGA-DA-A1IC-06 4 737340 737340 C T PCGF3 Missense_Mutation p.S114F 0.25 deleterious(0.02) benign(0.085) TCGA-DA-A1IC-06 4 76489736 76489736 G A C4orf26 Missense_Mutation p.R175Q 0.24 tolerated_low_confidence(0.37) unknown(0) TCGA-DA-A1IC-06 4 82073116 82073116 G A PRKG2 Silent p.I361I 0.29 TCGA-DA-A1IC-06 4 8237240 8237240 C T SH3TC1 Silent p.F1121F 0.35 TCGA-DA-A1IC-06 4 83839810 83839810 A T THAP9 Silent p.V815V 0.30 TCGA-DA-A1IC-06 4 8411951 8411951 G A ACOX3 Silent p.P225P 0.27 TCGA-DA-A1IC-06 4 84350736 84350736 G A HELQ Missense_Mutation p.S820F 0.35 deleterious(0.01) benign(0.002) TCGA-DA-A1IC-06 4 86852176 86852176 G A ARHGAP24 Intron 0.43 TCGA-DA-A1IC-06 4 87744896 87744896 G A SLC10A6 Missense_Mutation p.P360L 0.42 tolerated_low_confidence(0.11) benign(0.004) TCGA-DA-A1IC-06 4 87744897 87744897 G A SLC10A6 Missense_Mutation p.P360S 0.40 tolerated_low_confidence(0.16) benign(0.011) TCGA-DA-A1IC-06 4 88052973 88052973 G T AFF1 Missense_Mutation p.D1044Y 0.35 deleterious(0) unknown(0) TCGA-DA-A1IC-06 4 88583737 88583737 G A DMP1 Silent p.R269R 0.51 TCGA-DA-A1IC-06 4 91549260 91549260 G A CCSER1 Silent p.A603A 0.44 TCGA-DA-A1IC-06 4 94006285 94006285 G A GRID2 Silent p.R128R 0.45 TCGA-DA-A1IC-06 4 94376916 94376916 G A GRID2 Missense_Mutation p.R550Q 0.31 deleterious(0.02) benign(0.114) TCGA-DA-A1IC-06 4 973225 973225 T A SLC26A1 Missense_Mutation p.E215V 0.42 deleterious_low_confidence(0.02) benign(0.007) TCGA-DA-A1IC-06 5 101816036 101816036 G A SLCO6A1 Missense_Mutation p.S154L 0.25 deleterious(0) possibly_damaging(0.871) TCGA-DA-A1IC-06 5 11199584 11199584 G T CTNND2 Missense_Mutation p.L651M 0.33 tolerated(0.26) benign(0.159) TCGA-DA-A1IC-06 5 112222849 112222849 C T REEP5 Missense_Mutation p.S128N 0.50 tolerated(0.33) possibly_damaging(0.756) TCGA-DA-A1IC-06 5 112228138 112228138 G A ZRSR1 Missense_Mutation p.E268K 0.40 deleterious(0) possibly_damaging(0.836) TCGA-DA-A1IC-06 5 114483050 114483050 G A TRIM36 Missense_Mutation p.P114S 0.29 deleterious(0.02) benign(0.139) TCGA-DA-A1IC-06 5 125820190 125820190 G A GRAMD3 Missense_Mutation p.G330E 0.35 tolerated(0.09) probably_damaging(0.945) TCGA-DA-A1IC-06 5 126887694 126887694 T C PRRC1 3'UTR 0.33 TCGA-DA-A1IC-06 5 127599332 127599332 G A FBN2 Silent p.S2659S 0.44 TCGA-DA-A1IC-06 5 129015556 129015556 G A ADAMTS19 Missense_Mutation p.R863Q 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A1IC-06 5 129030529 129030529 G A ADAMTS19 Missense_Mutation p.E973K 0.47 tolerated(0.64) benign(0.053) TCGA-DA-A1IC-06 5 131296268 131296268 G A ACSL6 Missense_Mutation p.S635F 0.27 tolerated(0.06) benign(0.003) TCGA-DA-A1IC-06 5 133643805 133643805 G A CDKL3 Intron 0.31 TCGA-DA-A1IC-06 5 133909398 133909398 C T JADE2 Nonsense_Mutation p.Q500* 0.39 TCGA-DA-A1IC-06 5 134724714 134724714 G A H2AFY Missense_Mutation p.P24S 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 5 13753464 13753464 C T DNAH5 Missense_Mutation p.D3584N 0.27 possibly_damaging(0.822) TCGA-DA-A1IC-06 5 13864514 13864514 C T DNAH5 Missense_Mutation p.E1530K 0.33 benign(0.005) TCGA-DA-A1IC-06 5 139060873 139060873 C T CXXC5 Silent p.S255S 0.29 TCGA-DA-A1IC-06 5 139422085 139422085 C T NRG2 Silent p.R190R 0.35 TCGA-DA-A1IC-06 5 140188507 140188507 G A PCDHA4 Missense_Mutation p.E579K 0.49 deleterious_low_confidence(0.02) benign(0.15) TCGA-DA-A1IC-06 5 140264094 140264094 T C PCDHA13 Silent p.S747S 0.32 TCGA-DA-A1IC-06 5 140474984 140474984 C T PCDHB2 Missense_Mutation p.R204C 0.44 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DA-A1IC-06 5 140537684 140537684 C T PCDHB17 3'UTR 0.41 TCGA-DA-A1IC-06 5 140589311 140589311 T A PCDHB12 Missense_Mutation p.S278T 0.40 tolerated_low_confidence(0.11) benign(0.103) TCGA-DA-A1IC-06 5 140593745 140593745 C T PCDHB13 Missense_Mutation p.S17F 0.25 tolerated_low_confidence(0.62) benign(0.001) TCGA-DA-A1IC-06 5 140604757 140604757 C T PCDHB14 Silent p.F560F 0.24 TCGA-DA-A1IC-06 5 140754080 140754080 G A PCDHGA6 Missense_Mutation p.E144K 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A1IC-06 5 140774388 140774388 G A PCDHGA8 Missense_Mutation p.E670K 0.38 deleterious_low_confidence(0) benign(0.091) TCGA-DA-A1IC-06 5 140784331 140784331 C T PCDHGA9 Silent p.L604L 0.45 TCGA-DA-A1IC-06 5 140801345 140801345 G A PCDHGA11 Missense_Mutation p.R184Q 0.38 tolerated_low_confidence(1) benign(0.007) TCGA-DA-A1IC-06 5 14462946 14462946 G A TRIO Missense_Mutation p.G1860D 0.24 benign(0.005) TCGA-DA-A1IC-06 5 147889434 147889434 C T HTR4 Missense_Mutation p.E221K 0.30 tolerated(0.75) benign(0.026) TCGA-DA-A1IC-06 5 148420988 148420988 G A SH3TC2 Missense_Mutation p.P241L 0.26 deleterious(0) probably_damaging(0.928) TCGA-DA-A1IC-06 5 149498406 149498406 G A PDGFRB Silent p.I936I 0.29 TCGA-DA-A1IC-06 5 149510178 149510178 C T PDGFRB Missense_Mutation p.E431K 0.38 tolerated(0.62) benign(0.003) TCGA-DA-A1IC-06 5 149755307 149755307 C T TCOF1 Silent p.L576L 0.37 TCGA-DA-A1IC-06 5 150028727 150028727 G A SYNPO Missense_Mutation p.R541K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-DA-A1IC-06 5 153085278 153085278 C T GRIA1 Missense_Mutation p.P502S 0.39 deleterious(0.04) possibly_damaging(0.626) TCGA-DA-A1IC-06 5 154282156 154282156 G A GEMIN5 Nonsense_Mutation p.Q937* 0.38 TCGA-DA-A1IC-06 5 156665129 156665129 G A ITK Missense_Mutation p.G260E 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A1IC-06 5 172195795 172195795 C T DUSP1 Silent p.Q358Q 0.29 TCGA-DA-A1IC-06 5 172755148 172755148 C T STC2 Missense_Mutation p.A17T 0.29 deleterious(0.04) benign(0.036) TCGA-DA-A1IC-06 5 172755149 172755149 C T STC2 Silent p.L16L 0.29 TCGA-DA-A1IC-06 5 172755234 172755234 C - STC2 5'UTR 0.39 TCGA-DA-A1IC-06 5 177569657 177569657 G A RMND5B Silent p.T71T 0.35 TCGA-DA-A1IC-06 5 178139115 178139115 G A ZNF354A Silent p.N588N 0.32 TCGA-DA-A1IC-06 5 180335759 180335759 T A BTNL8 Missense_Mutation p.F75I 0.35 tolerated(0.31) benign(0.207) TCGA-DA-A1IC-06 5 181635 181635 G A PLEKHG4B Missense_Mutation p.R1114K 0.34 deleterious(0) probably_damaging(0.978) TCGA-DA-A1IC-06 5 24537507 24537507 G A CDH10 Missense_Mutation p.P170S 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-DA-A1IC-06 5 33937921 33937921 T A RXFP3 Missense_Mutation p.F359Y 0.39 deleterious(0.01) possibly_damaging(0.593) TCGA-DA-A1IC-06 5 36986157 36986157 C T NIPBL Missense_Mutation p.P959S 0.38 deleterious_low_confidence(0.02) benign(0.177) TCGA-DA-A1IC-06 5 39381627 39381627 G A DAB2 Missense_Mutation p.A478V 0.34 tolerated(0.49) benign(0.003) TCGA-DA-A1IC-06 5 40852466 40852466 C T CARD6 Silent p.I344I 0.30 TCGA-DA-A1IC-06 5 40998216 40998216 C T MROH2B Missense_Mutation p.A1566T 0.31 deleterious(0.02) benign(0.026) TCGA-DA-A1IC-06 5 41033239 41033239 G A MROH2B Silent p.F755F 0.34 TCGA-DA-A1IC-06 5 41048515 41048515 C T MROH2B Missense_Mutation p.G532E 0.27 tolerated(0.23) benign(0.241) TCGA-DA-A1IC-06 5 41172438 41172438 C T C6 Missense_Mutation p.E394K 0.37 tolerated(0.08) benign(0.038) TCGA-DA-A1IC-06 5 42566007 42566007 G A GHR Missense_Mutation p.A11T 0.38 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-DA-A1IC-06 5 454110 454110 C T EXOC3 Silent p.D330D 0.53 TCGA-DA-A1IC-06 5 454111 454111 C T EXOC3 Silent p.L331L 0.53 TCGA-DA-A1IC-06 5 52778781 52778781 G A FST Missense_Mutation p.E53K 0.43 deleterious(0.02) benign(0.1) TCGA-DA-A1IC-06 5 52978999 52978999 C T NDUFS4 Missense_Mutation p.S159F 0.38 deleterious(0) probably_damaging(0.994) TCGA-DA-A1IC-06 5 57790406 57790406 G A GAPT Missense_Mutation p.G15R 0.22 deleterious(0) probably_damaging(0.995) TCGA-DA-A1IC-06 5 58511757 58511757 G A PDE4D Missense_Mutation p.P165S 0.16 deleterious_low_confidence(0.04) benign(0.041) TCGA-DA-A1IC-06 5 66460381 66460381 G A MAST4 Missense_Mutation p.G1792S 0.39 probably_damaging(0.953) TCGA-DA-A1IC-06 5 66460382 66460382 G A MAST4 Missense_Mutation p.G1792D 0.40 probably_damaging(0.992) TCGA-DA-A1IC-06 5 71756135 71756135 C T ZNF366 Missense_Mutation p.E397K 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-DA-A1IC-06 5 75490882 75490882 G A SV2C Missense_Mutation p.G240D 0.37 deleterious(0.04) probably_damaging(0.986) TCGA-DA-A1IC-06 5 79048514 79048514 G A CMYA5 Missense_Mutation p.M3669I 0.47 benign(0.251) TCGA-DA-A1IC-06 5 79744198 79744198 G A ZFYVE16 Silent p.L1026L 0.50 TCGA-DA-A1IC-06 5 89947487 89947487 G C GPR98 Missense_Mutation p.G1119A 0.29 probably_damaging(0.91) TCGA-DA-A1IC-06 5 90124894 90124894 C T GPR98 Missense_Mutation p.S5501F 0.35 possibly_damaging(0.831) TCGA-DA-A1IC-06 5 96031529 96031529 C T CAST Intron 0.31 TCGA-DA-A1IC-06 5 96228051 96228051 G A ERAP2 Missense_Mutation p.G340D 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 6 10830855 10830855 C G MAK Missense_Mutation p.Q9H 0.50 deleterious(0) possibly_damaging(0.897) TCGA-DA-A1IC-06 6 108986040 108986040 G A FOXO3 Silent p.Q668Q 0.55 TCGA-DA-A1IC-06 6 117709094 117709094 T C ROS1 Silent p.E621E 0.73 TCGA-DA-A1IC-06 6 123369860 123369860 G A CLVS2 Missense_Mutation p.E220K 0.62 tolerated(0.3) benign(0.392) TCGA-DA-A1IC-06 6 127517111 127517111 C T RSPO3 Nonsense_Mutation p.Q260* 0.59 TCGA-DA-A1IC-06 6 128134289 128134289 C A THEMIS Silent p.T499T 0.57 TCGA-DA-A1IC-06 6 13801538 13801538 G A MCUR1 Silent p.A241A 0.17 TCGA-DA-A1IC-06 6 13801539 13801539 G A MCUR1 Missense_Mutation p.A241V 0.18 deleterious(0.05) possibly_damaging(0.897) TCGA-DA-A1IC-06 6 142725021 142725021 G A GPR126 Missense_Mutation p.A680T 0.51 deleterious(0) probably_damaging(0.999) TCGA-DA-A1IC-06 6 144820410 144820410 G A UTRN Silent p.Q1537Q 0.64 TCGA-DA-A1IC-06 6 146350520 146350520 G A GRM1 5'UTR 0.56 TCGA-DA-A1IC-06 6 151161774 151161774 G A PLEKHG1 Silent p.R1300R 0.62 TCGA-DA-A1IC-06 6 15497063 15497063 C T JARID2 Missense_Mutation p.P536L 0.36 tolerated(0.05) benign(0.018) TCGA-DA-A1IC-06 6 25849654 25849654 G A SLC17A3 Missense_Mutation p.S437L 0.39 tolerated(0.06) benign(0.066) TCGA-DA-A1IC-06 6 25913438 25913438 G T SLC17A2 3'UTR 0.32 TCGA-DA-A1IC-06 6 26217325 26217325 C T HIST1H2AE Silent p.S41S 0.50 TCGA-DA-A1IC-06 6 28472125 28472125 C T GPX6 Missense_Mutation p.V204I 0.46 tolerated(0.25) benign(0.007) TCGA-DA-A1IC-06 6 30166464 30166464 C T TRIM26 Silent p.E139E 0.20 TCGA-DA-A1IC-06 6 311939 311939 G A DUSP22 Missense_Mutation p.D39N 0.10 tolerated(0.25) probably_damaging(0.979) TCGA-DA-A1IC-06 6 31602309 31602309 C T PRRC2A Missense_Mutation p.P1637L 0.33 unknown(0) TCGA-DA-A1IC-06 6 31691441 31691441 C T C6orf25 Silent p.D29D 0.39 TCGA-DA-A1IC-06 6 31700000 31700000 T A CLIC1 Silent p.I186I 0.57 TCGA-DA-A1IC-06 6 32007017 32007017 T C CYP21A2 Missense_Mutation p.F147L 0.20 tolerated(1) benign(0.048) TCGA-DA-A1IC-06 6 32023901 32023901 C T TNXB Missense_Mutation p.E2732K 0.26 benign(0.12) TCGA-DA-A1IC-06 6 32902752 32902752 G A HLA-DMB Missense_Mutation p.S263F 0.66 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A1IC-06 6 32948572 32948572 C T BRD2 3'UTR 0.68 TCGA-DA-A1IC-06 6 35747191 35747191 G A CLPSL2 Silent p.K89K 0.42 TCGA-DA-A1IC-06 6 36454878 36454878 C T KCTD20 Missense_Mutation p.P396S 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.642) TCGA-DA-A1IC-06 6 36978766 36978766 C T FGD2 Silent p.I106I 0.20 TCGA-DA-A1IC-06 6 36995938 36995938 G A FGD2 Silent p.%3D 0.48 TCGA-DA-A1IC-06 6 37612346 37612346 C T MDGA1 Silent p.Q776Q 0.30 TCGA-DA-A1IC-06 6 38771046 38771046 T C DNAH8 Missense_Mutation p.I781T 0.21 benign(0.002) TCGA-DA-A1IC-06 6 39507938 39507938 C T KIF6 Missense_Mutation p.A496T 0.21 tolerated(0.58) benign(0.004) TCGA-DA-A1IC-06 6 41658526 41658526 G A TFEB Missense_Mutation p.P115S 0.43 tolerated(0.2) probably_damaging(0.998) TCGA-DA-A1IC-06 6 46660228 46660228 C T TDRD6 Nonsense_Mutation p.Q1455* 0.18 TCGA-DA-A1IC-06 6 54804859 54804859 C T FAM83B Missense_Mutation p.P364S 0.62 tolerated(0.38) benign(0.13) TCGA-DA-A1IC-06 6 55684473 55684473 G A BMP5 Silent p.I221I 0.59 TCGA-DA-A1IC-06 6 70894800 70894800 G A COL19A1 Missense_Mutation p.G950E 0.58 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 6 71191749 71191749 C T FAM135A Missense_Mutation p.R239C 0.71 deleterious(0.01) benign(0.001) TCGA-DA-A1IC-06 6 83728796 83728796 G A UBE3D Silent p.I302I 0.58 TCGA-DA-A1IC-06 7 100348407 100348407 G A ZAN Missense_Mutation p.G470E 0.62 possibly_damaging(0.58) TCGA-DA-A1IC-06 7 100349677 100349677 C T ZAN Missense_Mutation p.S650F 0.40 benign(0.02) TCGA-DA-A1IC-06 7 100678076 100678076 G A MUC17 Missense_Mutation p.D1127N 0.46 unknown(0) TCGA-DA-A1IC-06 7 106508121 106508121 C T PIK3CG Missense_Mutation p.P39S 0.38 tolerated(0.93) benign(0.007) TCGA-DA-A1IC-06 7 106526703 106526703 G A PIK3CG Missense_Mutation p.G999E 0.38 tolerated(0.06) benign(0.029) TCGA-DA-A1IC-06 7 107664409 107664409 G A LAMB4 3'UTR 0.48 TCGA-DA-A1IC-06 7 107717458 107717458 G A LAMB4 Silent p.S685S 0.47 TCGA-DA-A1IC-06 7 116399521 116399521 G A MET Missense_Mutation p.E799K 0.16 tolerated(0.7) benign(0.281) TCGA-DA-A1IC-06 7 123595117 123595117 A G SPAM1 Missense_Mutation p.T341A 0.39 tolerated(0.36) benign(0.004) TCGA-DA-A1IC-06 7 128032945 128032945 G A IMPDH1 3'UTR 0.15 TCGA-DA-A1IC-06 7 128487821 128487821 G A FLNC Silent p.L1453L 0.43 TCGA-DA-A1IC-06 7 128645162 128645162 A T TNPO3 Missense_Mutation p.F202I 0.44 tolerated(0.22) benign(0.241) TCGA-DA-A1IC-06 7 138305795 138305795 G A SVOPL Missense_Mutation p.S450F 0.27 deleterious(0) possibly_damaging(0.571) TCGA-DA-A1IC-06 7 138312121 138312121 G T SVOPL Missense_Mutation p.F385L 0.45 tolerated(0.06) benign(0.25) TCGA-DA-A1IC-06 7 138529097 138529097 G A KIAA1549 Missense_Mutation p.S1806L 0.50 deleterious(0.01) possibly_damaging(0.656) TCGA-DA-A1IC-06 7 138529099 138529099 C A KIAA1549 Silent p.P1805P 0.49 TCGA-DA-A1IC-06 7 138603041 138603041 G A KIAA1549 Missense_Mutation p.S444L 0.34 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 7 140125765 140125765 G A RAB19 Missense_Mutation p.V157I 0.44 tolerated(0.07) probably_damaging(0.931) TCGA-DA-A1IC-06 7 140154231 140154231 G A MKRN1 3'UTR 0.56 TCGA-DA-A1IC-06 7 140301517 140301517 G A DENND2A Silent p.P227P 0.36 TCGA-DA-A1IC-06 7 142045354 142045354 G A TRBV4-2 5'UTR 0.38 TCGA-DA-A1IC-06 7 14216341 14216342 - A DGKB Intron 0.20 TCGA-DA-A1IC-06 7 142224037 142224037 G A TRBV11-1 Missense_Mutation p.P44S 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-DA-A1IC-06 7 142231754 142231754 G A TRBV10-1 Nonsense_Mutation p.R55* 0.37 TCGA-DA-A1IC-06 7 143792932 143792932 C T OR2A12 Silent p.L244L 0.44 TCGA-DA-A1IC-06 7 144098436 144098436 C T NOBOX Missense_Mutation p.E183K 0.34 tolerated(0.07) possibly_damaging(0.754) TCGA-DA-A1IC-06 7 148716090 148716090 G A PDIA4 Nonsense_Mutation p.Q157* 0.35 TCGA-DA-A1IC-06 7 148716091 148716091 G A PDIA4 Silent p.T156T 0.35 TCGA-DA-A1IC-06 7 149428761 149428761 G A KRBA1 Splice_Site p.X715_splice 0.39 TCGA-DA-A1IC-06 7 149502521 149502521 G A SSPO RNA 0.45 TCGA-DA-A1IC-06 7 149513089 149513089 G A SSPO RNA 0.78 TCGA-DA-A1IC-06 7 150034461 150034461 G T LRRC61 Nonsense_Mutation p.E171* 0.46 TCGA-DA-A1IC-06 7 150269947 150269947 C T GIMAP4 Silent p.I263I 0.46 TCGA-DA-A1IC-06 7 150418016 150418016 G A GIMAP1 3'UTR 0.58 TCGA-DA-A1IC-06 7 150648916 150648916 C T KCNH2 Missense_Mutation p.G522E 0.42 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 7 150648917 150648917 C T KCNH2 Missense_Mutation p.G522R 0.42 deleterious(0) probably_damaging(0.996) TCGA-DA-A1IC-06 7 150693975 150693975 C T NOS3 Missense_Mutation p.P182S 0.38 tolerated(0.32) benign(0.015) TCGA-DA-A1IC-06 7 150814262 150814262 C T AGAP3 Silent p.S157S 0.49 TCGA-DA-A1IC-06 7 151053246 151053246 C T NUB1 Missense_Mutation p.P235S 0.32 deleterious(0) probably_damaging(0.984) TCGA-DA-A1IC-06 7 154876301 154876301 C T HTR5A 3'UTR 0.32 TCGA-DA-A1IC-06 7 21695568 21695568 C A DNAH11 Missense_Mutation p.P1693Q 0.26 benign(0.034) TCGA-DA-A1IC-06 7 25181885 25181885 C T C7orf31 Missense_Mutation p.R309Q 0.45 deleterious(0.03) benign(0) TCGA-DA-A1IC-06 7 28758481 28758481 C T CREB5 Silent p.S192S 0.41 TCGA-DA-A1IC-06 7 30496564 30496564 C A NOD1 5'UTR 0.37 TCGA-DA-A1IC-06 7 31867923 31867923 A T PDE1C Missense_Mutation p.V483D 0.27 deleterious(0) probably_damaging(0.942) TCGA-DA-A1IC-06 7 38725369 38725369 C T FAM183B Silent p.T79T 0.42 TCGA-DA-A1IC-06 7 39472825 39472825 C T POU6F2 Silent p.I392I 0.45 TCGA-DA-A1IC-06 7 44100395 44100395 C T DBNL Silent p.S400S 0.34 TCGA-DA-A1IC-06 7 44152207 44152207 C T AEBP1 Silent p.F756F 0.31 TCGA-DA-A1IC-06 7 53103599 53103599 G A POM121L12 Missense_Mutation p.E79K 0.43 tolerated(0.81) benign(0.018) TCGA-DA-A1IC-06 7 56122096 56122096 A T CCT6A Missense_Mutation p.K79M 0.33 deleterious(0) probably_damaging(0.99) TCGA-DA-A1IC-06 7 56122097 56122097 G A CCT6A Silent p.K79K 0.32 TCGA-DA-A1IC-06 7 57529081 57529081 T A ZNF716 Missense_Mutation p.F305Y 0.43 deleterious(0.01) benign(0.009) TCGA-DA-A1IC-06 7 73150843 73150843 T C ABHD11 3'UTR 0.41 TCGA-DA-A1IC-06 7 76828636 76828636 C T FGL2 Missense_Mutation p.E159K 0.52 tolerated(0.09) benign(0.06) TCGA-DA-A1IC-06 7 76942807 76942807 G A GSAP Missense_Mutation p.P757S 0.41 deleterious(0.03) possibly_damaging(0.547) TCGA-DA-A1IC-06 7 82582812 82582812 A G PCLO Missense_Mutation p.V2486A 0.39 unknown(0) TCGA-DA-A1IC-06 7 82584810 82584810 C T PCLO Missense_Mutation p.R1820K 0.45 unknown(0) TCGA-DA-A1IC-06 7 82585057 82585057 C T PCLO Missense_Mutation p.D1738N 0.42 unknown(0) TCGA-DA-A1IC-06 7 82585408 82585408 C T PCLO Missense_Mutation p.E1621K 0.40 unknown(0) TCGA-DA-A1IC-06 7 83640346 83640346 C T SEMA3A Silent p.T329T 0.34 TCGA-DA-A1IC-06 7 91715658 91715658 G A AKAP9 Silent p.T3047T 0.37 TCGA-DA-A1IC-06 7 92762825 92762825 G A SAMD9L Silent p.S820S 0.48 TCGA-DA-A1IC-06 7 94293046 94293046 G A PEG10 Missense_Mutation p.E60K 0.46 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-DA-A1IC-06 7 95761084 95761084 C T SLC25A13 Missense_Mutation p.G522E 0.50 tolerated(0.27) benign(0.362) TCGA-DA-A1IC-06 7 99621898 99621898 C T ZKSCAN1 Missense_Mutation p.S183L 0.46 tolerated(0.12) benign(0.025) TCGA-DA-A1IC-06 8 10464599 10464599 C T RP1L1 Missense_Mutation p.E2337K 0.73 unknown(0) TCGA-DA-A1IC-06 8 106813480 106813480 A G ZFPM2 Silent p.K390K 0.85 TCGA-DA-A1IC-06 8 10756377 10756377 G A XKR6 Silent p.S337S 0.73 TCGA-DA-A1IC-06 8 118165286 118165286 G A SLC30A8 Silent p.S125S 0.74 TCGA-DA-A1IC-06 8 125047638 125047638 G A FER1L6 Missense_Mutation p.E803K 0.74 tolerated(0.44) benign(0.211) TCGA-DA-A1IC-06 8 133920503 133920503 G A TG Missense_Mutation p.S1307N 0.62 tolerated(0.05) benign(0.063) TCGA-DA-A1IC-06 8 139606359 139606359 C T COL22A1 Missense_Mutation p.G1506R 0.63 unknown(0) TCGA-DA-A1IC-06 8 142151389 142151389 C T DENND3 Missense_Mutation p.P117S 0.77 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 8 145003683 145003683 G C PLEC Missense_Mutation p.L1131V 0.65 unknown(0) TCGA-DA-A1IC-06 8 145003928 145003928 G A PLEC Silent p.L1074L 0.65 TCGA-DA-A1IC-06 8 145535489 145535489 C T HSF1 Missense_Mutation p.P276L 0.76 deleterious(0.04) benign(0.049) TCGA-DA-A1IC-06 8 145535748 145535748 C T HSF1 Silent p.S320S 0.69 TCGA-DA-A1IC-06 8 145537219 145537219 G A HSF1 Missense_Mutation p.D389N 0.81 deleterious(0) probably_damaging(0.981) TCGA-DA-A1IC-06 8 146017431 146017431 G C RPL8 Silent p.R28R 0.70 TCGA-DA-A1IC-06 8 24170961 24170961 G A ADAM28 Silent p.R148R 0.83 TCGA-DA-A1IC-06 8 2820050 2820050 C T CSMD1 Missense_Mutation p.G3189E 0.63 probably_damaging(1) TCGA-DA-A1IC-06 8 2857600 2857600 C T CSMD1 Missense_Mutation p.G2695S 0.71 probably_damaging(1) TCGA-DA-A1IC-06 8 28671062 28671062 C T INTS9 Missense_Mutation p.E186K 0.71 tolerated(0.08) possibly_damaging(0.507) TCGA-DA-A1IC-06 8 28980985 28980985 C T KIF13B Missense_Mutation p.R1126H 0.38 deleterious(0) probably_damaging(0.988) TCGA-DA-A1IC-06 8 30210483 30210483 G A TUBBP1 RNA 0.77 TCGA-DA-A1IC-06 8 37704431 37704431 G T BRF2 Silent p.L159L 0.74 TCGA-DA-A1IC-06 8 39466603 39466603 A G ADAM18 Silent p.E77E 0.69 TCGA-DA-A1IC-06 8 40011331 40011331 C T C8orf4 Nonsense_Mutation p.Q94* 0.78 TCGA-DA-A1IC-06 8 40532385 40532385 G A ZMAT4 Nonsense_Mutation p.Q139* 0.77 TCGA-DA-A1IC-06 8 41399330 41399330 C T GINS4 Missense_Mutation p.P163S 0.71 tolerated(0.35) benign(0.282) TCGA-DA-A1IC-06 8 55533886 55533886 C T RP1 Silent p.A120A 0.58 TCGA-DA-A1IC-06 8 55533887 55533887 C T RP1 Missense_Mutation p.R121C 0.60 deleterious(0.01) probably_damaging(0.915) TCGA-DA-A1IC-06 8 59404023 59404023 C T CYP7A1 3'UTR 0.53 TCGA-DA-A1IC-06 8 68188300 68188300 G A ARFGEF1 Silent p.S416S 0.70 TCGA-DA-A1IC-06 8 73848694 73848694 C T KCNB2 Silent p.I368I 0.80 TCGA-DA-A1IC-06 8 74528007 74528007 G A STAU2 Missense_Mutation p.S194L 0.76 tolerated(0.28) benign(0.035) TCGA-DA-A1IC-06 8 82355666 82355666 G A PMP2 Silent p.G122G 0.72 TCGA-DA-A1IC-06 8 95143165 95143165 G A CDH17 Silent p.V741V 0.73 TCGA-DA-A1IC-06 9 103092373 103092373 G A TEX10 Silent p.S443S 0.55 TCGA-DA-A1IC-06 9 104192063 104192063 C T ALDOB Missense_Mutation p.E100K 0.57 tolerated(0.85) benign(0.014) TCGA-DA-A1IC-06 9 104499750 104499750 G A GRIN3A Missense_Mutation p.S171L 0.56 deleterious(0.02) benign(0.085) TCGA-DA-A1IC-06 9 112704975 112704975 C T PALM2 Missense_Mutation p.A169V 0.50 deleterious(0) possibly_damaging(0.597) TCGA-DA-A1IC-06 9 114371468 114371468 A G LRRC37A5P RNA 0.62 TCGA-DA-A1IC-06 9 117139527 117139527 G A AKNA Missense_Mutation p.S187F 0.49 tolerated(0.07) probably_damaging(0.969) TCGA-DA-A1IC-06 9 119158800 119158800 C T PAPPA Missense_Mutation p.P1597S 0.52 tolerated(0.07) possibly_damaging(0.641) TCGA-DA-A1IC-06 9 119188067 119188067 C T ASTN2 3'UTR 0.59 TCGA-DA-A1IC-06 9 121930073 121930073 G A BRINP1 Silent p.S525S 0.56 TCGA-DA-A1IC-06 9 129643035 129643035 A G ZBTB34 Missense_Mutation p.K449E 0.55 deleterious(0) probably_damaging(0.998) TCGA-DA-A1IC-06 9 131185509 131185509 C T CERCAM Silent p.T131T 0.56 TCGA-DA-A1IC-06 9 131899968 131899968 C T PPP2R4 Silent p.T261T 0.60 TCGA-DA-A1IC-06 9 13193234 13193234 G A MPDZ Nonsense_Mutation p.R579* 0.59 TCGA-DA-A1IC-06 9 134073012 134073012 C A NUP214 Silent p.P1377P 0.60 TCGA-DA-A1IC-06 9 134073013 134073013 C T NUP214 Missense_Mutation p.P1378S 0.63 benign(0.387) TCGA-DA-A1IC-06 9 137004998 137004998 C T WDR5 5'UTR 0.64 TCGA-DA-A1IC-06 9 137801781 137801781 C T FCN1 Missense_Mutation p.D282N 0.63 tolerated(0.44) benign(0.011) TCGA-DA-A1IC-06 9 139751375 139751375 G T MAMDC4 Silent p.L618L 0.59 TCGA-DA-A1IC-06 9 139915193 139915193 G A ABCA2 Silent p.F406F 0.89 TCGA-DA-A1IC-06 9 18753396 18753396 G A ADAMTSL1 Missense_Mutation p.E703K 0.56 deleterious(0.04) benign(0.309) TCGA-DA-A1IC-06 9 27172649 27172649 C T TEK Missense_Mutation p.H222Y 0.48 deleterious(0.01) benign(0) TCGA-DA-A1IC-06 9 34996329 34996329 C T DNAJB5 Silent p.D207D 0.43 TCGA-DA-A1IC-06 9 34996330 34996330 C T DNAJB5 Missense_Mutation p.P208S 0.46 deleterious(0.01) possibly_damaging(0.859) TCGA-DA-A1IC-06 9 74332991 74332991 G A TMEM2 Nonsense_Mutation p.R758* 0.64 TCGA-DA-A1IC-06 9 78711013 78711013 A T PCSK5 Nonsense_Mutation p.K368* 0.58 TCGA-DA-A1IC-06 9 78799588 78799588 G A PCSK5 Splice_Site p.X733_splice 0.71 TCGA-DA-A1IC-06 9 79323205 79323205 C T PRUNE2 Missense_Mutation p.E1329K 0.55 tolerated(0.4) benign(0.013) TCGA-DA-A1IC-06 9 84607623 84607623 G A SPATA31D1 Silent p.K746K 0.60 TCGA-DA-A1IC-06 X 100387214 100387214 G A CENPI Silent p.K441K 0.88 TCGA-DA-A1IC-06 X 105152852 105152852 C T NRK Nonsense_Mutation p.Q408* 0.76 TCGA-DA-A1IC-06 X 106456205 106456205 G A PIH1D3 Missense_Mutation p.A34T 0.84 deleterious(0.03) possibly_damaging(0.511) TCGA-DA-A1IC-06 X 109694656 109694656 C T RGAG1 Silent p.L271L 0.87 TCGA-DA-A1IC-06 X 11160413 11160413 C T ARHGAP6 Missense_Mutation p.D733N 0.82 tolerated_low_confidence(1) benign(0) TCGA-DA-A1IC-06 X 122528859 122528859 G A GRIA3 Missense_Mutation p.G264E 0.90 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A1IC-06 X 123227933 123227933 C T STAG2 Missense_Mutation p.S1215L 0.91 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A1IC-06 X 123554600 123554600 G A TENM1 Missense_Mutation p.L1515F 0.84 deleterious(0.02) probably_damaging(0.991) TCGA-DA-A1IC-06 X 130218338 130218338 C T ARHGAP36 Silent p.I235I 0.83 TCGA-DA-A1IC-06 X 130412036 130412036 C T IGSF1 Missense_Mutation p.G710E 0.85 deleterious(0.01) probably_damaging(1) TCGA-DA-A1IC-06 X 138878601 138878601 G A ATP11C Missense_Mutation p.S349L 0.77 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A1IC-06 X 1407760 1407760 T A CSF2RA Missense_Mutation p.F151Y 0.26 tolerated(0.06) probably_damaging(0.993) TCGA-DA-A1IC-06 X 1407761 1407761 T A CSF2RA Missense_Mutation p.F151L 0.26 deleterious(0) probably_damaging(0.942) TCGA-DA-A1IC-06 X 150844662 150844662 G A PASD1 3'UTR 0.77 TCGA-DA-A1IC-06 X 151124192 151124192 G A GABRE Missense_Mutation p.R309W 0.83 deleterious(0) probably_damaging(0.996) TCGA-DA-A1IC-06 X 151124193 151124193 G A GABRE Silent p.A308A 0.84 TCGA-DA-A1IC-06 X 152858094 152858094 T - FAM58A Frame_Shift_Del p.D174Afs*170 0.71 TCGA-DA-A1IC-06 X 1531813 1531813 C T ASMTL Intron 0.31 TCGA-DA-A1IC-06 X 153247741 153247741 C T TMEM187 Silent p.G76G 0.84 TCGA-DA-A1IC-06 X 19416366 19416366 C T MAP3K15 Missense_Mutation p.E682K 0.82 deleterious(0) probably_damaging(0.997) TCGA-DA-A1IC-06 X 2343329 2343329 A C DHRSX Silent p.P42P 0.51 TCGA-DA-A1IC-06 X 2343330 2343330 G A DHRSX Missense_Mutation p.P42L 0.52 tolerated(0.29) benign(0.115) TCGA-DA-A1IC-06 X 24637166 24637166 G A PCYT1B Silent p.T51T 0.94 TCGA-DA-A1IC-06 X 26212600 26212600 A T MAGEB6 Nonsense_Mutation p.K213* 0.84 TCGA-DA-A1IC-06 X 26213207 26213207 C T MAGEB6 3'UTR 0.83 TCGA-DA-A1IC-06 X 27998737 27998737 C T DCAF8L1 Missense_Mutation p.D239N 0.84 deleterious(0.02) benign(0) TCGA-DA-A1IC-06 X 3235332 3235332 G A MXRA5 Silent p.S2130S 0.90 TCGA-DA-A1IC-06 X 38129039 38129039 T G TM4SF2 Intron 0.87 TCGA-DA-A1IC-06 X 46388340 46388340 G A ZNF674 Missense_Mutation p.S7L 0.83 tolerated(0.78) benign(0.001) TCGA-DA-A1IC-06 X 48780999 48780999 C T OTUD5 Missense_Mutation p.G502E 0.77 tolerated(0.12) benign(0.098) TCGA-DA-A1IC-06 X 49021314 49021314 T C MAGIX Silent p.G131G 0.90 TCGA-DA-A1IC-06 X 49088167 49088167 C T CACNA1F Missense_Mutation p.R83Q 0.88 deleterious(0.04) possibly_damaging(0.656) TCGA-DA-A1IC-06 X 53243945 53243945 G A KDM5C Missense_Mutation p.H350Y 0.89 deleterious(0) probably_damaging(0.982) TCGA-DA-A1IC-06 X 54960284 54960284 C T PFKFB1 Silent p.E442E 0.88 TCGA-DA-A1IC-06 X 65390556 65390556 G A HEPH Silent p.T102T 0.79 TCGA-DA-A1IC-06 X 73965504 73965504 T C KIAA2022 5'UTR 0.83 TCGA-DA-A1IC-06 X 84525729 84525729 C T ZNF711 Missense_Mutation p.S394F 0.87 deleterious(0) probably_damaging(1) TCGA-DA-A1IC-06 X 86890699 86890699 G A KLHL4 Missense_Mutation p.G617R 0.86 deleterious(0) possibly_damaging(0.543) TCGA-DA-A1IC-06 Y 2847288 2847288 C T ZFY Nonsense_Mutation p.R554* 0.74 TCGA-DA-A3F3-06 10 121212313 121212313 A G GRK5 Missense_Mutation p.Q512R 0.49 deleterious(0) probably_damaging(0.963) TCGA-DA-A3F3-06 10 124358538 124358538 C T DMBT1 Silent p.L1069L 0.41 TCGA-DA-A3F3-06 10 124591900 124591900 G A CUZD1 Missense_Mutation p.S573F 0.39 deleterious(0) possibly_damaging(0.729) TCGA-DA-A3F3-06 10 26830607 26830607 T C APBB1IP Missense_Mutation p.C381R 0.59 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 10 27536568 27536568 C T RP11-85G18.6 Intron 0.24 TCGA-DA-A3F3-06 10 38344720 38344720 C T ZNF33A Silent p.P556P 0.35 TCGA-DA-A3F3-06 10 50531975 50531975 G A C10orf71 Missense_Mutation p.S462N 0.26 tolerated(0.49) benign(0.014) TCGA-DA-A3F3-06 10 50901852 50901852 C T C10orf53 Silent p.L44L 0.54 TCGA-DA-A3F3-06 10 50952118 50952118 C T OGDHL Missense_Mutation p.G595R 0.56 deleterious(0) probably_damaging(0.994) TCGA-DA-A3F3-06 10 5442921 5442921 C T TUBAL3 Missense_Mutation p.E45K 0.42 tolerated_low_confidence(0.47) benign(0.007) TCGA-DA-A3F3-06 10 5836878 5836878 G A GDI2 Missense_Mutation p.P120S 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 10 62023660 62023660 C T ANK3 Missense_Mutation p.R211Q 0.47 probably_damaging(0.998) TCGA-DA-A3F3-06 10 72297608 72297608 G A PALD1 Nonsense_Mutation p.W423* 0.41 TCGA-DA-A3F3-06 10 87898618 87898618 G A GRID1 Silent p.I228I 0.48 TCGA-DA-A3F3-06 10 94223753 94223753 G A IDE Silent p.I832I 0.50 TCGA-DA-A3F3-06 10 95119734 95119734 G A MYOF Silent p.G992G 0.35 TCGA-DA-A3F3-06 11 102398352 102398352 C T MMP7 Silent p.V129V 0.33 TCGA-DA-A3F3-06 11 102448155 102448155 A T MMP20 Missense_Mutation p.Y452N 0.51 deleterious(0.02) benign(0.063) TCGA-DA-A3F3-06 11 121038780 121038780 C T TECTA Silent p.I1868I 0.89 TCGA-DA-A3F3-06 11 128709563 128709563 G A KCNJ1 Silent p.I211I 0.91 TCGA-DA-A3F3-06 11 18309543 18309543 G A HPS5 Missense_Mutation p.P820S 0.41 tolerated(0.1) benign(0.321) TCGA-DA-A3F3-06 11 27016017 27016017 C T FIBIN 5'UTR 0.43 TCGA-DA-A3F3-06 11 36596355 36596355 C T RAG1 Nonsense_Mutation p.Q501* 0.36 TCGA-DA-A3F3-06 11 4112532 4112532 C T STIM1 Missense_Mutation p.S521L 0.48 deleterious(0.01) benign(0.301) TCGA-DA-A3F3-06 11 4470843 4470843 C T OR52K2 Missense_Mutation p.R92W 0.39 deleterious(0.02) benign(0.008) TCGA-DA-A3F3-06 11 50004013 50004013 C T OR4C12 Missense_Mutation p.E9K 0.44 deleterious_low_confidence(0) benign(0.029) TCGA-DA-A3F3-06 11 55321911 55321911 C T OR4C15 Silent p.I43I 0.73 TCGA-DA-A3F3-06 11 5537450 5537450 G A UBQLNL Silent p.F74F 0.35 TCGA-DA-A3F3-06 11 55944509 55944509 G A OR5J2 Missense_Mutation p.R139K 0.45 tolerated(0.26) benign(0.02) TCGA-DA-A3F3-06 11 5730949 5730949 C T TRIM22 3'UTR 0.53 TCGA-DA-A3F3-06 11 6425049 6425049 G A APBB1 Missense_Mutation p.S242F 0.33 deleterious(0.03) probably_damaging(0.952) TCGA-DA-A3F3-06 11 64374620 64374620 G A NRXN2 3'UTR 0.22 TCGA-DA-A3F3-06 11 65273245 65273245 T A MALAT1 RNA 0.45 TCGA-DA-A3F3-06 11 66130889 66130889 G A RP11-867G23.8 Silent p.K46K 0.31 TCGA-DA-A3F3-06 11 68518091 68518091 G A MTL5 Missense_Mutation p.P13L 0.19 deleterious_low_confidence(0.05) unknown(0) TCGA-DA-A3F3-06 11 68704380 68704380 C - IGHMBP2 Frame_Shift_Del p.P812Lfs*19 0.77 TCGA-DA-A3F3-06 11 71152464 71152464 G A DHCR7 Silent p.I145I 0.50 TCGA-DA-A3F3-06 11 75902877 75902877 C T WNT11 Missense_Mutation p.M207I 0.25 tolerated(0.24) benign(0.023) TCGA-DA-A3F3-06 11 78433748 78433748 G A TENM4 Silent p.F1255F 0.29 TCGA-DA-A3F3-06 11 82708292 82708292 T A RAB30 Missense_Mutation p.T23S 0.33 tolerated(0.95) probably_damaging(1) TCGA-DA-A3F3-06 11 85445046 85445046 A C SYTL2 Missense_Mutation p.N441K 0.17 tolerated(0.21) benign(0.044) TCGA-DA-A3F3-06 12 104129342 104129342 G A STAB2 Missense_Mutation p.G1845E 0.45 deleterious(0.02) probably_damaging(0.983) TCGA-DA-A3F3-06 12 104742243 104742243 C T TXNRD1 3'UTR 0.34 TCGA-DA-A3F3-06 12 109041221 109041221 A G CORO1C Silent p.R461R 0.40 TCGA-DA-A3F3-06 12 110819677 110819677 T C ANAPC7 Missense_Mutation p.S372G 0.48 tolerated(0.52) benign(0.197) TCGA-DA-A3F3-06 12 11462314 11462314 G A PRB4 Silent p.F30F 0.38 TCGA-DA-A3F3-06 12 11546423 11546423 G A PRB2 Missense_Mutation p.P197S 0.31 tolerated(0.42) unknown(0) TCGA-DA-A3F3-06 12 116409900 116409900 G A MED13L Missense_Mutation p.S1958F 0.23 deleterious(0) probably_damaging(0.985) TCGA-DA-A3F3-06 12 120580374 120580374 G A GCN1L1 Silent p.I1922I 0.48 TCGA-DA-A3F3-06 12 123200954 123200954 G A HCAR3 Missense_Mutation p.R111C 0.61 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 12 124352637 124352637 G A DNAH10 Missense_Mutation p.G2379E 0.47 benign(0.002) TCGA-DA-A3F3-06 12 124848237 124848237 G C NCOR2 Silent p.A972A 0.37 TCGA-DA-A3F3-06 12 18439842 18439842 C T PIK3C2G Missense_Mutation p.S247F 0.44 deleterious(0) probably_damaging(0.984) TCGA-DA-A3F3-06 12 41330595 41330595 G A CNTN1 Nonsense_Mutation p.W333* 0.44 TCGA-DA-A3F3-06 12 4398035 4398035 C T CCND2 Missense_Mutation p.S200L 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 12 4626315 4626315 G A C12orf4 Silent p.F358F 0.32 TCGA-DA-A3F3-06 12 52377937 52377937 C T ACVR1B Silent p.I363I 0.33 TCGA-DA-A3F3-06 12 53002199 53002199 T C KRT73 Silent p.T468T 0.49 TCGA-DA-A3F3-06 12 53189253 53189253 C G KRT3 Missense_Mutation p.G192R 0.46 deleterious(0.03) probably_damaging(0.991) TCGA-DA-A3F3-06 12 55038515 55038515 G A DCD Silent p.V105V 0.46 TCGA-DA-A3F3-06 12 56530642 56530642 C T ESYT1 Missense_Mutation p.P593S 0.47 tolerated(0.33) benign(0.032) TCGA-DA-A3F3-06 12 57619168 57619168 C T NXPH4 Silent p.L189L 0.40 TCGA-DA-A3F3-06 12 69125034 69125034 G A NUP107 Missense_Mutation p.E627K 0.37 deleterious(0.04) possibly_damaging(0.595) TCGA-DA-A3F3-06 12 71029486 71029486 C T PTPRB Missense_Mutation p.G139E 0.53 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DA-A3F3-06 12 71050488 71050488 C T PTPRR Missense_Mutation p.D626N 0.44 deleterious(0.01) possibly_damaging(0.732) TCGA-DA-A3F3-06 12 7475882 7475882 G A ACSM4 Missense_Mutation p.G393E 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 12 94673364 94673364 C T PLXNC1 Silent p.F1238F 0.45 TCGA-DA-A3F3-06 12 9994467 9994467 G A KLRF1 Missense_Mutation p.E132K 0.27 deleterious(0.02) possibly_damaging(0.688) TCGA-DA-A3F3-06 13 115064450 115064450 G A UPF3A Missense_Mutation p.G328S 0.60 tolerated(1) benign(0.006) TCGA-DA-A3F3-06 13 36743158 36743158 C T SOHLH2 3'UTR 0.54 TCGA-DA-A3F3-06 13 38151929 38151929 G A POSTN Missense_Mutation p.R657C 0.37 deleterious(0.02) possibly_damaging(0.816) TCGA-DA-A3F3-06 13 43843653 43843653 C T ENOX1 Missense_Mutation p.E503K 0.63 tolerated(0.33) possibly_damaging(0.611) TCGA-DA-A3F3-06 13 48833008 48833008 C T ITM2B Missense_Mutation p.H214Y 0.61 deleterious(0.01) benign(0.14) TCGA-DA-A3F3-06 13 49772236 49772236 C T FNDC3A Missense_Mutation p.P870L 0.22 tolerated(0.2) benign(0) TCGA-DA-A3F3-06 14 105521889 105521889 C T GPR132 5'UTR 0.54 TCGA-DA-A3F3-06 14 106067994 106067994 G A IGHE Silent p.S24S 0.35 TCGA-DA-A3F3-06 14 107113794 107113794 G A IGHV3-64 Missense_Mutation p.L101F 0.43 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-DA-A3F3-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.38 TCGA-DA-A3F3-06 14 20502075 20502075 G A OR4K13 Silent p.L281L 0.37 TCGA-DA-A3F3-06 14 20767021 20767021 G A TTC5 Missense_Mutation p.L192F 0.54 tolerated(0.13) possibly_damaging(0.463) TCGA-DA-A3F3-06 14 33290791 33290791 G A AKAP6 Missense_Mutation p.D1258N 0.59 tolerated(0.32) benign(0.011) TCGA-DA-A3F3-06 14 52496381 52496381 G A NID2 Missense_Mutation p.P762L 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 14 56763774 56763774 C T PELI2 Missense_Mutation p.P385S 0.47 tolerated(0.11) benign(0.124) TCGA-DA-A3F3-06 14 58063597 58063597 C T SLC35F4 Missense_Mutation p.D7N 0.43 tolerated_low_confidence(0.53) benign(0.003) TCGA-DA-A3F3-06 14 64909048 64909048 C T MTHFD1 Silent p.S688S 0.52 TCGA-DA-A3F3-06 14 68242764 68242764 G A ZFYVE26 Silent p.P1678P 0.42 TCGA-DA-A3F3-06 14 74876342 74876342 C T SYNDIG1L Missense_Mutation p.E36K 0.40 tolerated(0.08) benign(0.073) TCGA-DA-A3F3-06 14 74876343 74876343 C T SYNDIG1L Silent p.Q35Q 0.40 TCGA-DA-A3F3-06 14 75052643 75052643 C T LTBP2 Silent p.R248R 0.49 TCGA-DA-A3F3-06 14 92088095 92088095 C T CATSPERB Missense_Mutation p.R706K 0.33 tolerated(1) benign(0.001) TCGA-DA-A3F3-06 14 92091189 92091189 G A CATSPERB Silent p.V635V 0.41 TCGA-DA-A3F3-06 14 94088581 94088581 C T UNC79 Missense_Mutation p.P1491S 0.34 tolerated_low_confidence(0.07) benign(0.001) TCGA-DA-A3F3-06 15 100332711 100332711 G A AC090825.1 3'Flank 0.62 TCGA-DA-A3F3-06 15 22473085 22473085 C A IGHV4OR15-8 Silent p.G62G 0.26 TCGA-DA-A3F3-06 15 31234118 31234118 T C MTMR10 Missense_Mutation p.Y630C 0.43 deleterious(0) probably_damaging(0.969) TCGA-DA-A3F3-06 15 40259718 40259718 C T EIF2AK4 Silent p.I397I 0.36 TCGA-DA-A3F3-06 15 40917185 40917185 C T CASC5 Nonsense_Mutation p.Q1601* 0.50 TCGA-DA-A3F3-06 15 41148498 41148498 G T SPINT1 Missense_Mutation p.R454L 0.43 tolerated(0.36) benign(0.01) TCGA-DA-A3F3-06 15 43038186 43038186 G A TTBK2 Missense_Mutation p.S1181L 0.51 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DA-A3F3-06 15 44166495 44166495 G A FRMD5 Missense_Mutation p.P434L 0.47 deleterious(0.02) possibly_damaging(0.835) TCGA-DA-A3F3-06 15 48704789 48704789 C T FBN1 Missense_Mutation p.E2735K 0.38 benign(0.011) TCGA-DA-A3F3-06 15 52401917 52401917 C T BCL2L10 3'UTR 0.42 TCGA-DA-A3F3-06 15 67629389 67629389 C T IQCH Missense_Mutation p.P155L 0.31 tolerated(0.05) possibly_damaging(0.684) TCGA-DA-A3F3-06 15 84683440 84683440 G C ADAMTSL3 Missense_Mutation p.G1374R 0.62 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 15 85400630 85400630 G A ALPK3 Silent p.P1089P 0.60 TCGA-DA-A3F3-06 15 85406065 85406065 C T ALPK3 Silent p.I1645I 0.62 TCGA-DA-A3F3-06 16 18823442 18823442 C A SMG1 Silent p.R3543R 0.46 TCGA-DA-A3F3-06 16 18823443 18823443 C T SMG1 Missense_Mutation p.R3543Q 0.44 tolerated(0.06) benign(0.416) TCGA-DA-A3F3-06 16 19194943 19194943 C T SYT17 Missense_Mutation p.S142L 0.33 deleterious(0.02) benign(0.017) TCGA-DA-A3F3-06 16 20996486 20996486 G A DNAH3 Silent p.I2526I 0.55 TCGA-DA-A3F3-06 16 20999357 20999357 G A DNAH3 Missense_Mutation p.S2211F 0.46 deleterious(0) possibly_damaging(0.646) TCGA-DA-A3F3-06 16 2105449 2105449 C T TSC2 Silent p.F176F 0.57 TCGA-DA-A3F3-06 16 3107189 3107189 G A MMP25 Missense_Mutation p.D273N 0.25 tolerated(0.15) benign(0.443) TCGA-DA-A3F3-06 16 31092264 31092264 A - ZNF646 Frame_Shift_Del p.Y1540Sfs*8 0.27 TCGA-DA-A3F3-06 16 31372470 31372470 G A ITGAX Silent p.V316V 0.58 TCGA-DA-A3F3-06 16 55363007 55363007 C T IRX6 Missense_Mutation p.P373S 0.47 tolerated(0.47) benign(0.017) TCGA-DA-A3F3-06 16 71319194 71319194 G A CMTR2 Silent p.I210I 0.47 TCGA-DA-A3F3-06 16 71710379 71710379 G A PHLPP2 Missense_Mutation p.S481F 0.40 tolerated(0.84) possibly_damaging(0.486) TCGA-DA-A3F3-06 16 77369751 77369751 G A ADAMTS18 Silent p.P587P 0.42 TCGA-DA-A3F3-06 16 77387705 77387705 C T ADAMTS18 Silent p.Q513Q 0.51 TCGA-DA-A3F3-06 16 84529511 84529511 G A TLDC1 Silent p.V54V 0.52 TCGA-DA-A3F3-06 16 89925586 89925586 C T SPIRE2 Missense_Mutation p.P429L 0.46 deleterious(0.03) possibly_damaging(0.462) TCGA-DA-A3F3-06 17 2268223 2268223 G T SGSM2 Missense_Mutation p.D345Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-DA-A3F3-06 17 45490198 45490198 G A EFCAB13 Missense_Mutation p.D780N 0.45 tolerated(0.75) benign(0.007) TCGA-DA-A3F3-06 17 4624395 4624395 C T ARRB2 3'UTR 0.95 TCGA-DA-A3F3-06 17 46247993 46247993 C T SKAP1 Silent p.E285E 0.40 TCGA-DA-A3F3-06 17 47799872 47799872 G A FAM117A Missense_Mutation p.H151Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 17 48191601 48191601 C T SAMD14 Missense_Mutation p.E326K 0.51 deleterious(0.01) benign(0.234) TCGA-DA-A3F3-06 17 4907163 4907163 T G KIF1C Missense_Mutation p.N272K 0.06 deleterious(0) probably_damaging(0.933) TCGA-DA-A3F3-06 17 60802443 60802443 C T MARCH10 Missense_Mutation p.E654K 0.22 deleterious(0.01) possibly_damaging(0.906) TCGA-DA-A3F3-06 17 65940425 65940425 C T BPTF Missense_Mutation p.P2213S 0.25 probably_damaging(0.999) TCGA-DA-A3F3-06 17 66110653 66110653 G A LINC00674 RNA 0.44 TCGA-DA-A3F3-06 17 66110654 66110654 G A LINC00674 RNA 0.44 TCGA-DA-A3F3-06 17 72436695 72436695 C T GPRC5C Silent p.I305I 0.33 TCGA-DA-A3F3-06 17 72943475 72943475 G A OTOP3 Missense_Mutation p.A509T 0.61 tolerated(0.18) possibly_damaging(0.744) TCGA-DA-A3F3-06 17 73815826 73815826 C T UNK Silent p.F536F 0.31 TCGA-DA-A3F3-06 17 76450748 76450748 G A DNAH17 Silent p.L3390L 0.25 TCGA-DA-A3F3-06 18 19359527 19359527 T C MIB1 Silent p.S263S 0.49 TCGA-DA-A3F3-06 18 29522684 29522684 G A TRAPPC8 Missense_Mutation p.S15F 0.45 deleterious(0.01) possibly_damaging(0.653) TCGA-DA-A3F3-06 18 40850323 40850323 C T SYT4 Missense_Mutation p.V421M 0.32 tolerated(0.2) benign(0.001) TCGA-DA-A3F3-06 18 61569054 61569054 G A SERPINB2 Missense_Mutation p.G206R 0.40 deleterious(0.03) probably_damaging(1) TCGA-DA-A3F3-06 18 70417352 70417352 C T NETO1 Missense_Mutation p.E496K 0.33 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-DA-A3F3-06 19 11211008 11211008 C T LDLR Silent p.S59S 0.33 TCGA-DA-A3F3-06 19 13084348 13084348 C T DAND5 Missense_Mutation p.P157L 0.41 deleterious(0.04) benign(0.176) TCGA-DA-A3F3-06 19 13084349 13084349 C T DAND5 Silent p.P157P 0.41 TCGA-DA-A3F3-06 19 14034565 14034565 C T CC2D1A Silent p.F627F 0.39 TCGA-DA-A3F3-06 19 18182969 18182969 C T IL12RB1 Missense_Mutation p.G325D 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 19 18322038 18322038 C T PDE4C Missense_Mutation p.D614N 0.40 deleterious(0) probably_damaging(0.972) TCGA-DA-A3F3-06 19 18377214 18377214 G A KIAA1683 Missense_Mutation p.A379V 0.44 tolerated(0.37) benign(0.018) TCGA-DA-A3F3-06 19 19627027 19627027 G A NDUFA13 5'UTR 0.39 TCGA-DA-A3F3-06 19 36612445 36612445 C T TBCB Silent p.F124F 0.40 TCGA-DA-A3F3-06 19 38850181 38850181 C T CATSPERG Missense_Mutation p.S523L 0.54 deleterious(0) possibly_damaging(0.519) TCGA-DA-A3F3-06 19 43026335 43026335 G A CEACAM1 Silent p.S148S 0.41 TCGA-DA-A3F3-06 19 43373097 43373097 C T PSG1 Missense_Mutation p.E267K 0.29 tolerated(0.27) benign(0.003) TCGA-DA-A3F3-06 19 43859932 43859932 G A CD177 3'UTR 0.33 TCGA-DA-A3F3-06 19 43859933 43859933 G A CD177 Intron 0.34 TCGA-DA-A3F3-06 19 44224002 44224002 G A IRGC Missense_Mutation p.G431E 0.31 tolerated_low_confidence(0.18) benign(0.074) TCGA-DA-A3F3-06 19 44661338 44661338 A T ZNF234 Missense_Mutation p.H390L 0.26 deleterious(0) probably_damaging(0.973) TCGA-DA-A3F3-06 19 44661340 44661340 C A ZNF234 Missense_Mutation p.Q391K 0.26 tolerated(0.07) possibly_damaging(0.753) TCGA-DA-A3F3-06 19 48945520 48945520 C T GRIN2D Missense_Mutation p.L852F 0.48 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F3-06 19 50435781 50435781 C T ATF5 Missense_Mutation p.T94I 0.40 tolerated(0.13) benign(0.021) TCGA-DA-A3F3-06 19 50462039 50462039 C T SIGLEC11 Silent p.Q408Q 0.50 TCGA-DA-A3F3-06 19 50926222 50926222 C T SPIB Silent p.L89L 0.32 TCGA-DA-A3F3-06 19 50939085 50939085 C T MYBPC2 Silent p.F54F 0.54 TCGA-DA-A3F3-06 19 56539255 56539255 G T NLRP5 Missense_Mutation p.M552I 0.52 tolerated(0.25) benign(0.021) TCGA-DA-A3F3-06 19 57175892 57175892 G T ZNF835 Silent p.A225A 0.69 TCGA-DA-A3F3-06 19 5757877 5757877 C T CATSPERD Silent p.S434S 0.30 TCGA-DA-A3F3-06 19 58640040 58640040 G A ZNF329 Silent p.H277H 0.55 TCGA-DA-A3F3-06 19 6763771 6763771 G A SH2D3A 5'UTR 0.31 TCGA-DA-A3F3-06 19 830930 830930 G A AZU1 Missense_Mutation p.G195S 0.38 deleterious(0) possibly_damaging(0.862) TCGA-DA-A3F3-06 1 111957591 111957591 G A OVGP1 Missense_Mutation p.S511F 0.51 tolerated_low_confidence(0.18) benign(0.133) TCGA-DA-A3F3-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.38 tolerated(0.06) benign(0.006) TCGA-DA-A3F3-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.37 deleterious(0.01) benign(0.045) TCGA-DA-A3F3-06 1 115829256 115829256 G A NGF Missense_Mutation p.A54V 0.88 tolerated(0.33) benign(0.001) TCGA-DA-A3F3-06 1 12336845 12336845 C T VPS13D Missense_Mutation p.S1067L 0.44 benign(0.015) TCGA-DA-A3F3-06 1 154403031 154403031 C T IL6R Missense_Mutation p.P136L 0.76 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A3F3-06 1 1560757 1560757 C T MIB2 Silent p.V386V 0.33 TCGA-DA-A3F3-06 1 157504541 157504541 C T FCRL5 Nonsense_Mutation p.W515* 0.09 TCGA-DA-A3F3-06 1 158262068 158262068 G A CD1C Missense_Mutation p.E175K 0.69 tolerated(0.14) benign(0.041) TCGA-DA-A3F3-06 1 159778951 159778951 G A FCRL6 Missense_Mutation p.D174N 0.69 tolerated(0.13) probably_damaging(0.957) TCGA-DA-A3F3-06 1 160160774 160160774 A C CASQ1 Missense_Mutation p.D78A 0.19 deleterious(0.02) benign(0.022) TCGA-DA-A3F3-06 1 160262336 160262336 G A COPA Silent p.G975G 0.20 TCGA-DA-A3F3-06 1 161683045 161683045 C T FCRLA Missense_Mutation p.H342Y 0.25 tolerated(0.27) benign(0.076) TCGA-DA-A3F3-06 1 161833035 161833035 G C ATF6 Missense_Mutation p.S551T 0.23 tolerated(0.43) benign(0.041) TCGA-DA-A3F3-06 1 16260038 16260038 C T SPEN Missense_Mutation p.P2435S 0.55 benign(0) TCGA-DA-A3F3-06 1 167095139 167095139 G A DUSP27 Silent p.K257K 0.21 TCGA-DA-A3F3-06 1 17396660 17396660 C T PADI2 Missense_Mutation p.E563K 0.52 deleterious(0) possibly_damaging(0.609) TCGA-DA-A3F3-06 1 175334293 175334293 C T TNR Missense_Mutation p.E814K 0.80 tolerated(0.84) benign(0.192) TCGA-DA-A3F3-06 1 176679229 176679229 C T PAPPA2 Nonsense_Mutation p.Q1190* 0.70 TCGA-DA-A3F3-06 1 196796106 196796106 G A CFHR1 Nonsense_Mutation p.W134* 0.92 TCGA-DA-A3F3-06 1 197030984 197030984 C T F13B Silent p.G127G 0.53 TCGA-DA-A3F3-06 1 200878023 200878023 C T C1orf106 Missense_Mutation p.P247L 0.09 deleterious(0.03) probably_damaging(1) TCGA-DA-A3F3-06 1 214814357 214814357 T C CENPF Silent p.T892T 0.22 TCGA-DA-A3F3-06 1 215848073 215848073 C T USH2A Missense_Mutation p.D4394N 0.80 benign(0.015) TCGA-DA-A3F3-06 1 226453303 226453303 C G LIN9 Missense_Mutation p.W339C 0.23 tolerated(0.16) benign(0.053) TCGA-DA-A3F3-06 1 228529149 228529149 C T OBSCN Silent p.I6913I 0.79 TCGA-DA-A3F3-06 1 22925423 22925423 C T EPHA8 Silent p.V757V 0.27 TCGA-DA-A3F3-06 1 237906899 237906899 G A RYR2 Intron 0.23 TCGA-DA-A3F3-06 1 240371804 240371804 G A FMN2 Missense_Mutation p.G1231E 0.09 benign(0.072) TCGA-DA-A3F3-06 1 248263372 248263372 G A OR2L13 Missense_Mutation p.G232E 0.19 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F3-06 1 248263373 248263373 G A OR2L13 Silent p.G232G 0.18 TCGA-DA-A3F3-06 1 248525857 248525857 G A OR2T4 Silent p.R325R 0.18 TCGA-DA-A3F3-06 1 26441071 26441071 C T PDIK1L Missense_Mutation p.S91F 0.33 deleterious(0.03) possibly_damaging(0.56) TCGA-DA-A3F3-06 1 26594983 26594983 C T CEP85 Missense_Mutation p.R451C 0.36 deleterious(0) probably_damaging(0.928) TCGA-DA-A3F3-06 1 26644596 26644596 C T UBXN11 5'UTR 0.40 TCGA-DA-A3F3-06 1 27278292 27278292 C T C1orf172 Missense_Mutation p.D194N 0.42 tolerated(0.47) benign(0.02) TCGA-DA-A3F3-06 1 27278715 27278715 G A C1orf172 Missense_Mutation p.H53Y 0.31 tolerated(0.13) benign(0.001) TCGA-DA-A3F3-06 1 27721279 27721279 C T GPR3 Missense_Mutation p.S326F 0.45 deleterious(0) benign(0.407) TCGA-DA-A3F3-06 1 31349510 31349510 G A SDC3 Silent p.T253T 0.26 TCGA-DA-A3F3-06 1 34087782 34087782 G C CSMD2 Missense_Mutation p.H1898D 0.43 deleterious(0) possibly_damaging(0.836) TCGA-DA-A3F3-06 1 43273077 43273077 C T CCDC23 3'UTR 0.39 TCGA-DA-A3F3-06 1 52849185 52849185 G A ORC1 Silent p.P640P 0.41 TCGA-DA-A3F3-06 1 57417794 57417794 C T C8B Missense_Mutation p.G198D 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 1 57480947 57480947 C A DAB1 Missense_Mutation p.Q351H 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A3F3-06 1 62288660 62288660 C T INADL Missense_Mutation p.S576F 0.43 deleterious(0) probably_damaging(0.981) TCGA-DA-A3F3-06 1 63300477 63300477 A C ATG4C Missense_Mutation p.Y348S 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 1 66833507 66833507 A G PDE4B Missense_Mutation p.T505A 0.55 deleterious(0.03) benign(0.018) TCGA-DA-A3F3-06 1 6712908 6712908 G A DNAJC11 Missense_Mutation p.S204L 0.35 deleterious(0) probably_damaging(0.989) TCGA-DA-A3F3-06 1 89848403 89848403 G A GBP6 Missense_Mutation p.D445N 0.59 tolerated(0.37) benign(0.02) TCGA-DA-A3F3-06 1 97658630 97658630 C T DPYD Missense_Mutation p.D873N 0.41 tolerated(0.24) benign(0) TCGA-DA-A3F3-06 20 1161566 1161566 C T TMEM74B Missense_Mutation p.D233N 0.38 deleterious(0.05) possibly_damaging(0.705) TCGA-DA-A3F3-06 20 13695808 13695808 C G ESF1 Missense_Mutation p.V757L 0.60 deleterious(0.03) benign(0.184) TCGA-DA-A3F3-06 20 18507119 18507119 C T SEC23B Missense_Mutation p.R313C 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 20 2465042 2465042 T A ZNF343 Missense_Mutation p.T189S 0.49 tolerated(0.09) benign(0.175) TCGA-DA-A3F3-06 20 30064402 30064402 C T REM1 Missense_Mutation p.L52F 0.32 tolerated(0.15) benign(0.022) TCGA-DA-A3F3-06 20 30556550 30556550 G A XKR7 Missense_Mutation p.G191D 0.69 deleterious(0) probably_damaging(0.993) TCGA-DA-A3F3-06 20 40727129 40727129 A T PTPRT Missense_Mutation p.F1260I 0.54 tolerated(0.06) probably_damaging(0.994) TCGA-DA-A3F3-06 20 44258500 44258500 G A WFDC10A Silent p.L16L 0.40 TCGA-DA-A3F3-06 20 50769650 50769650 G A ZFP64 Missense_Mutation p.H361Y 0.39 deleterious(0) probably_damaging(0.977) TCGA-DA-A3F3-06 20 57769394 57769394 C T ZNF831 Missense_Mutation p.P1107L 0.45 tolerated(0.07) benign(0.005) TCGA-DA-A3F3-06 20 61981222 61981222 T C CHRNA4 Missense_Mutation p.N514S 0.38 tolerated(0.45) benign(0.001) TCGA-DA-A3F3-06 20 853619 853619 C T ANGPT4 Missense_Mutation p.R499Q 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 21 32119458 32119458 G A KRTAP21-2 Silent p.S21S 0.12 TCGA-DA-A3F3-06 21 33684129 33684129 G A MRAP Missense_Mutation p.G114E 0.46 tolerated(0.21) benign(0.053) TCGA-DA-A3F3-06 21 39671687 39671687 C T KCNJ15 Silent p.I168I 0.38 TCGA-DA-A3F3-06 21 40191500 40191500 C T ETS2 Silent p.S295S 0.45 TCGA-DA-A3F3-06 21 43892882 43892882 G A RSPH1 3'UTR 0.54 TCGA-DA-A3F3-06 22 20024569 20024569 C T TANGO2 Intron 0.30 TCGA-DA-A3F3-06 22 37627401 37627401 G A RAC2 Silent p.P106P 0.45 TCGA-DA-A3F3-06 22 39530536 39530536 G A CBX7 Silent p.F156F 0.42 TCGA-DA-A3F3-06 22 42262864 42262864 G C SREBF2 Missense_Mutation p.G40R 0.39 deleterious(0.03) possibly_damaging(0.532) TCGA-DA-A3F3-06 22 45574280 45574280 C T NUP50 Missense_Mutation p.R168W 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 22 51237270 51237270 G A RPL23AP82 RNA 0.51 TCGA-DA-A3F3-06 2 108488310 108488310 C T RGPD4 Missense_Mutation p.H1284Y 0.45 tolerated(0.17) benign(0.003) TCGA-DA-A3F3-06 2 110049072 110049072 C T SH3RF3 Silent p.L507L 0.42 TCGA-DA-A3F3-06 2 113670619 113670619 G A IL37 Silent p.V10V 0.49 TCGA-DA-A3F3-06 2 113950937 113950937 C T PSD4 Silent p.F674F 0.56 TCGA-DA-A3F3-06 2 125504852 125504852 C T CNTNAP5 Silent p.H707H 0.50 TCGA-DA-A3F3-06 2 136566687 136566687 C T LCT Missense_Mutation p.G1077E 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F3-06 2 187531505 187531505 C T ITGAV Silent p.I747I 0.62 TCGA-DA-A3F3-06 2 198288628 198288628 G A SF3B1 Silent p.L33L 0.31 TCGA-DA-A3F3-06 2 207527908 207527908 C T DYTN Missense_Mutation p.R451Q 0.21 tolerated(0.26) benign(0) TCGA-DA-A3F3-06 2 220466127 220466127 C T STK11IP Missense_Mutation p.L89F 0.40 deleterious(0) possibly_damaging(0.603) TCGA-DA-A3F3-06 2 227920702 227920702 G A COL4A4 Missense_Mutation p.P892L 0.24 unknown(0) TCGA-DA-A3F3-06 2 228884600 228884600 G A SPHKAP Missense_Mutation p.H324Y 0.27 tolerated(1) benign(0) TCGA-DA-A3F3-06 2 231235650 231235650 G A SP140L Missense_Mutation p.R184K 0.32 tolerated(0.12) benign(0.004) TCGA-DA-A3F3-06 2 277292 277292 G A ACP1 Silent p.E155E 0.32 TCGA-DA-A3F3-06 2 33173951 33173951 C T LTBP1 Silent p.V168V 0.38 TCGA-DA-A3F3-06 2 48874117 48874117 G A STON1-GTF2A1L Missense_Mutation p.G1009E 0.41 tolerated(0.38) benign(0.058) TCGA-DA-A3F3-06 2 69049712 69049712 G A ARHGAP25 Missense_Mutation p.E481K 0.40 tolerated(0.12) possibly_damaging(0.575) TCGA-DA-A3F3-06 2 70387814 70387814 G A C2orf42 Missense_Mutation p.R487C 0.36 deleterious(0) probably_damaging(0.978) TCGA-DA-A3F3-06 3 100053592 100053592 C T NIT2 5'UTR 0.31 TCGA-DA-A3F3-06 3 100645169 100645169 C T ABI3BP Missense_Mutation p.G86E 0.56 deleterious(0) probably_damaging(0.931) TCGA-DA-A3F3-06 3 11076324 11076324 G A SLC6A1 Missense_Mutation p.M545I 0.39 tolerated(0.1) benign(0.344) TCGA-DA-A3F3-06 3 113377503 113377503 G A KIAA2018 Missense_Mutation p.S1009F 0.52 probably_damaging(0.914) TCGA-DA-A3F3-06 3 120347258 120347258 G A HGD Missense_Mutation p.P436L 0.32 tolerated(0.06) benign(0.285) TCGA-DA-A3F3-06 3 120352123 120352123 C T HGD Silent p.K353K 0.36 TCGA-DA-A3F3-06 3 121208660 121208660 G A POLQ Nonsense_Mutation p.R1040* 0.25 TCGA-DA-A3F3-06 3 122002855 122002855 G A CASR Missense_Mutation p.G695D 0.51 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F3-06 3 129233282 129233282 G A IFT122 Missense_Mutation p.R1064K 0.49 tolerated(1) benign(0.001) TCGA-DA-A3F3-06 3 13364838 13364838 G A NUP210 Missense_Mutation p.A1580V 0.41 deleterious(0.02) benign(0.001) TCGA-DA-A3F3-06 3 133670158 133670158 C T SLCO2A1 Missense_Mutation p.R252Q 0.43 deleterious(0.04) possibly_damaging(0.499) TCGA-DA-A3F3-06 3 141499387 141499387 A T GRK7 Missense_Mutation p.T262S 0.33 tolerated(0.23) benign(0.021) TCGA-DA-A3F3-06 3 142396891 142396891 C T PLS1 Missense_Mutation p.S172F 0.49 deleterious(0.03) benign(0.079) TCGA-DA-A3F3-06 3 168833255 168833255 C T MECOM Missense_Mutation p.G679E 0.35 tolerated(1) benign(0.197) TCGA-DA-A3F3-06 3 168833913 168833913 C T MECOM Missense_Mutation p.D460N 0.66 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 3 17052594 17052594 G A PLCL2 Missense_Mutation p.E460K 0.55 deleterious(0) probably_damaging(0.932) TCGA-DA-A3F3-06 3 170783999 170783999 A T TNIK Missense_Mutation p.F1326I 0.34 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F3-06 3 195516895 195516895 C T MUC4 Missense_Mutation p.G519E 0.55 unknown(0) TCGA-DA-A3F3-06 3 195517229 195517229 C T MUC4 Missense_Mutation p.E408K 0.26 unknown(0) TCGA-DA-A3F3-06 3 197444889 197444889 C T KIAA0226 Missense_Mutation p.D60N 0.27 deleterious(0.03) probably_damaging(1) TCGA-DA-A3F3-06 3 382568 382568 C T CHL1 Silent p.L159L 0.46 TCGA-DA-A3F3-06 3 39184611 39184611 G A CSRNP1 Missense_Mutation p.P569S 0.44 tolerated(0.09) benign(0.284) TCGA-DA-A3F3-06 3 407799 407799 G T CHL1 Splice_Site p.X584_splice 0.65 TCGA-DA-A3F3-06 3 432786 432786 A C CHL1 Missense_Mutation p.N912T 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-DA-A3F3-06 3 44764024 44764024 C G ZNF502 3'UTR 0.50 TCGA-DA-A3F3-06 3 48686246 48686246 C T CELSR3 Missense_Mutation p.R2228Q 0.29 tolerated(0.27) benign(0.006) TCGA-DA-A3F3-06 3 49693591 49693591 C T BSN Missense_Mutation p.P2201L 0.34 unknown(0) TCGA-DA-A3F3-06 3 55052249 55052249 G A CACNA2D3 Silent p.Q964Q 0.40 TCGA-DA-A3F3-06 4 110681447 110681447 C T CFI Missense_Mutation p.E288K 0.39 deleterious(0) possibly_damaging(0.794) TCGA-DA-A3F3-06 4 110932382 110932382 G A EGF Missense_Mutation p.R1132K 0.56 deleterious_low_confidence(0.04) benign(0.05) TCGA-DA-A3F3-06 4 114458517 114458517 C G CAMK2D Missense_Mutation p.G166A 0.45 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DA-A3F3-06 4 155508759 155508759 C T FGA Missense_Mutation p.E139K 0.41 tolerated(0.12) benign(0.393) TCGA-DA-A3F3-06 4 178272600 178272600 C T NEIL3 Silent p.S312S 0.45 TCGA-DA-A3F3-06 4 183609333 183609333 G A TENM3 Missense_Mutation p.D684N 0.46 tolerated(0.06) probably_damaging(0.956) TCGA-DA-A3F3-06 4 25678325 25678325 G A SLC34A2 Missense_Mutation p.G676D 0.40 tolerated_low_confidence(1) benign(0.003) TCGA-DA-A3F3-06 4 36150095 36150095 C T ARAP2 Missense_Mutation p.E978K 0.53 deleterious(0) probably_damaging(0.969) TCGA-DA-A3F3-06 4 40121902 40121902 C T N4BP2 Missense_Mutation p.S724L 0.51 tolerated(0.39) benign(0.014) TCGA-DA-A3F3-06 4 71507856 71507856 C T ENAM Missense_Mutation p.P238L 0.43 deleterious(0) probably_damaging(0.984) TCGA-DA-A3F3-06 4 8469678 8469678 C T TRMT44 Missense_Mutation p.S511F 0.47 deleterious(0.01) benign(0.321) TCGA-DA-A3F3-06 4 87726520 87726520 C T PTPN13 Missense_Mutation p.P2253L 0.67 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 4 96046263 96046263 C T BMPR1B Silent p.L222L 0.38 TCGA-DA-A3F3-06 5 111091611 111091611 G A NREP Intron 0.55 TCGA-DA-A3F3-06 5 121758886 121758886 G A SNCAIP Missense_Mutation p.E152K 0.26 deleterious(0) probably_damaging(0.993) TCGA-DA-A3F3-06 5 123980230 123980230 T A ZNF608 Missense_Mutation p.K1277I 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F3-06 5 129037112 129037112 C T ADAMTS19 Nonsense_Mutation p.R990* 0.16 TCGA-DA-A3F3-06 5 13871727 13871727 C T DNAH5 Missense_Mutation p.E1182K 0.21 benign(0.292) TCGA-DA-A3F3-06 5 147813044 147813044 C T FBXO38 Missense_Mutation p.S829F 0.93 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F3-06 5 156672894 156672894 C T ITK Silent p.F506F 0.89 TCGA-DA-A3F3-06 5 24511518 24511518 C T CDH10 Missense_Mutation p.R307Q 0.43 tolerated(0.18) benign(0.335) TCGA-DA-A3F3-06 5 31323136 31323136 C T CDH6 Silent p.F698F 0.54 TCGA-DA-A3F3-06 5 38412636 38412636 C T EGFLAM Silent p.I460I 0.30 TCGA-DA-A3F3-06 5 41203237 41203237 C T C6 Nonsense_Mutation p.W32* 0.38 TCGA-DA-A3F3-06 5 41203238 41203238 C T C6 Nonsense_Mutation p.W32* 0.40 TCGA-DA-A3F3-06 5 42700018 42700018 C T GHR Missense_Mutation p.P178S 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 5 42718700 42718700 G A GHR Missense_Mutation p.R364K 0.51 tolerated(0.23) benign(0.181) TCGA-DA-A3F3-06 5 73931247 73931247 G A ENC1 Missense_Mutation p.S355L 0.56 tolerated(0.06) benign(0.387) TCGA-DA-A3F3-06 5 7766907 7766907 A C ADCY2 Missense_Mutation p.L734F 0.03 tolerated(0.31) benign(0.001) TCGA-DA-A3F3-06 5 90074253 90074253 G A GPR98 Missense_Mutation p.D4226N 0.69 possibly_damaging(0.821) TCGA-DA-A3F3-06 5 94727109 94727109 C T FAM81B Missense_Mutation p.L6F 0.37 deleterious_low_confidence(0) benign(0.001) TCGA-DA-A3F3-06 6 105609453 105609453 A T POPDC3 Nonsense_Mutation p.L111* 0.44 TCGA-DA-A3F3-06 6 119345372 119345372 G A FAM184A Nonsense_Mutation p.Q256* 0.53 TCGA-DA-A3F3-06 6 128150743 128150743 C T THEMIS Missense_Mutation p.R196K 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-DA-A3F3-06 6 133827288 133827288 G A EYA4 Missense_Mutation p.M412I 0.47 deleterious(0.02) benign(0.246) TCGA-DA-A3F3-06 6 135517065 135517065 C T MYB Silent p.I376I 0.44 TCGA-DA-A3F3-06 6 135517079 135517079 C T MYB Missense_Mutation p.T381I 0.41 tolerated(0.11) benign(0.037) TCGA-DA-A3F3-06 6 142396923 142396923 G A NMBR Silent p.S345S 0.46 TCGA-DA-A3F3-06 6 146678764 146678764 C T GRM1 Silent p.I512I 0.37 TCGA-DA-A3F3-06 6 152647630 152647630 G A SYNE1 Missense_Mutation p.L5032F 0.43 possibly_damaging(0.674) TCGA-DA-A3F3-06 6 152725406 152725406 G A SYNE1 Missense_Mutation p.S2256F 0.47 benign(0.047) TCGA-DA-A3F3-06 6 168227350 168227350 G A MLLT4 5'Flank 0.30 TCGA-DA-A3F3-06 6 24450118 24450118 G A GPLD1 Missense_Mutation p.R449W 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 6 24596453 24596453 A G KIAA0319 Missense_Mutation p.L150P 0.21 tolerated(0.17) benign(0.001) TCGA-DA-A3F3-06 6 27368625 27368625 A C ZNF391 Missense_Mutation p.H159P 0.11 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F3-06 6 31596971 31596971 C T PRRC2A Missense_Mutation p.P606S 0.83 possibly_damaging(0.641) TCGA-DA-A3F3-06 6 41129174 41129174 G A TREM2 Missense_Mutation p.S73F 0.76 deleterious(0.02) probably_damaging(0.912) TCGA-DA-A3F3-06 6 41743232 41743232 G A FRS3 Missense_Mutation p.L60F 0.73 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 6 46827084 46827084 C A GPR116 Missense_Mutation p.Q852H 0.51 deleterious(0.03) possibly_damaging(0.677) TCGA-DA-A3F3-06 6 56033044 56033044 C T COL21A1 Missense_Mutation p.D360N 0.47 tolerated(0.16) benign(0.199) TCGA-DA-A3F3-06 6 66044898 66044898 A T EYS Missense_Mutation p.C581S 0.56 deleterious(0.04) benign(0.005) TCGA-DA-A3F3-06 7 100491048 100491048 G A ACHE Missense_Mutation p.T269M 0.50 deleterious(0.03) probably_damaging(0.996) TCGA-DA-A3F3-06 7 120876813 120876813 C T CPED1 Missense_Mutation p.P701S 0.17 deleterious(0.01) possibly_damaging(0.554) TCGA-DA-A3F3-06 7 12684210 12684210 G A SCIN Silent p.E587E 0.50 TCGA-DA-A3F3-06 7 129962490 129962490 G A CPA4 Missense_Mutation p.E414K 0.40 tolerated(0.17) benign(0.02) TCGA-DA-A3F3-06 7 138739986 138739986 C T ZC3HAV1 Missense_Mutation p.E718K 0.42 tolerated(0.94) benign(0.018) TCGA-DA-A3F3-06 7 142168545 142168545 G A TRBV5-4 Nonsense_Mutation p.Q60* 0.39 TCGA-DA-A3F3-06 7 149473471 149473471 G A ZNF467 5'Flank 0.34 TCGA-DA-A3F3-06 7 2998171 2998171 C T CARD11 5'UTR 0.33 TCGA-DA-A3F3-06 7 44005877 44005877 C T RP5-1165K10.2 RNA 0.24 TCGA-DA-A3F3-06 7 44192914 44192914 G A GCK Missense_Mutation p.T66I 0.38 tolerated(0.2) probably_damaging(0.999) TCGA-DA-A3F3-06 7 45697426 45697426 G A ADCY1 Missense_Mutation p.D417N 0.32 deleterious(0) probably_damaging(0.968) TCGA-DA-A3F3-06 7 47955074 47955074 C T PKD1L1 Missense_Mutation p.D395N 0.52 tolerated_low_confidence(0.69) benign(0.004) TCGA-DA-A3F3-06 7 50513276 50513277 AG T FIGNL1 Frame_Shift_Del p.A570Dfs*7 0.37 TCGA-DA-A3F3-06 7 50513698 50513698 A C FIGNL1 Missense_Mutation p.L430V 0.43 deleterious(0) benign(0.437) TCGA-DA-A3F3-06 7 55233060 55233060 A G EGFR Missense_Mutation p.N604D 0.38 tolerated(0.85) benign(0) TCGA-DA-A3F3-06 7 55872980 55872980 C T SEPT14 Missense_Mutation p.E364K 0.41 deleterious(0) probably_damaging(0.962) TCGA-DA-A3F3-06 7 72987698 72987698 G A TBL2 Missense_Mutation p.P184S 0.40 deleterious(0.01) probably_damaging(0.943) TCGA-DA-A3F3-06 7 94913480 94913480 C T PPP1R9A Silent p.S1149S 0.50 TCGA-DA-A3F3-06 7 99774681 99774681 G A GPC2 Silent p.L48L 0.45 TCGA-DA-A3F3-06 8 101541941 101541941 G A ANKRD46 Missense_Mutation p.R41C 0.14 deleterious(0.03) benign(0.42) TCGA-DA-A3F3-06 8 139890152 139890152 G A COL22A1 Missense_Mutation p.R167C 0.11 unknown(0) TCGA-DA-A3F3-06 8 28309810 28309810 G A FBXO16 Missense_Mutation p.R231C 0.87 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F3-06 8 2855630 2855630 C T CSMD1 Silent p.V2760V 0.74 TCGA-DA-A3F3-06 8 28574875 28574875 C T EXTL3 Silent p.I433I 0.94 TCGA-DA-A3F3-06 8 53092774 53092774 C T ST18 Missense_Mutation p.R62Q 0.43 deleterious(0.05) benign(0.059) TCGA-DA-A3F3-06 8 55541525 55541525 G A RP1 Missense_Mutation p.E1695K 0.47 tolerated(0.28) benign(0.009) TCGA-DA-A3F3-06 8 69009287 69009287 G A PREX2 Missense_Mutation p.D802N 0.74 tolerated_low_confidence(0.15) benign(0.31) TCGA-DA-A3F3-06 8 86250640 86250640 C T CA1 Missense_Mutation p.G26R 0.68 deleterious(0.02) probably_damaging(1) TCGA-DA-A3F3-06 9 100897189 100897189 C T CORO2A Missense_Mutation p.A123T 0.41 tolerated(0.22) benign(0.001) TCGA-DA-A3F3-06 9 120053707 120053707 G A ASTN2 Silent p.S176S 0.35 TCGA-DA-A3F3-06 9 125424063 125424063 T A OR1L1 Missense_Mutation p.D23E 0.39 tolerated(0.15) benign(0.002) TCGA-DA-A3F3-06 9 126202651 126202651 G A DENND1A Silent p.V492V 0.47 TCGA-DA-A3F3-06 9 128000509 128000509 G A HSPA5 Missense_Mutation p.P438L 0.38 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-DA-A3F3-06 9 128000510 128000510 G A HSPA5 Missense_Mutation p.P438S 0.37 tolerated_low_confidence(0.08) benign(0.034) TCGA-DA-A3F3-06 9 131846956 131846956 C T DOLPP1 Missense_Mutation p.S29F 0.41 tolerated(0.83) benign(0.003) TCGA-DA-A3F3-06 9 135158747 135158747 G A SETX Silent p.I2150I 0.44 TCGA-DA-A3F3-06 9 135702433 135702433 G A AK8 Missense_Mutation p.H189Y 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A3F3-06 9 137774391 137774391 G T FCN2 Silent p.L40L 0.36 TCGA-DA-A3F3-06 9 138650353 138650353 G A KCNT1 Missense_Mutation p.G285R 0.47 tolerated(0.07) benign(0.285) TCGA-DA-A3F3-06 9 5772727 5772727 C T KIAA1432 Silent p.S1260S 0.24 TCGA-DA-A3F3-06 9 8465571 8465571 G A PTPRD Silent p.F1203F 0.35 TCGA-DA-A3F3-06 9 8485307 8485307 G A PTPRD Missense_Mutation p.H1025Y 0.48 deleterious(0.01) probably_damaging(0.956) TCGA-DA-A3F3-06 9 8518129 8518129 G A PTPRD Missense_Mutation p.P421L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 9 8518130 8518130 G A PTPRD Missense_Mutation p.P421S 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A3F3-06 9 93650843 93650843 G A SYK Missense_Mutation p.R590Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F3-06 9 93650844 93650844 G C SYK Silent p.R590R 0.44 TCGA-DA-A3F3-06 X 124097629 124097629 G A TENM1 5'UTR 0.93 TCGA-DA-A3F3-06 X 128922047 128922047 G A SASH3 Splice_Site p.X51_splice 0.94 TCGA-DA-A3F3-06 X 134988650 134988650 C T SAGE1 Nonsense_Mutation p.R226* 0.43 TCGA-DA-A3F3-06 X 149639278 149639278 C T MAMLD1 Missense_Mutation p.S453F 0.93 deleterious(0) probably_damaging(0.982) TCGA-DA-A3F3-06 X 150842491 150842491 C T PASD1 Missense_Mutation p.P670S 0.89 tolerated(0.13) possibly_damaging(0.803) TCGA-DA-A3F3-06 X 150906989 150906989 C T CNGA2 Missense_Mutation p.P12S 0.84 tolerated_low_confidence(0.31) benign(0.118) TCGA-DA-A3F3-06 X 150906990 150906990 C T CNGA2 Missense_Mutation p.P12L 0.84 tolerated_low_confidence(0.14) benign(0.001) TCGA-DA-A3F3-06 X 50163489 50163489 C T DGKK RNA 0.87 TCGA-DA-A3F3-06 X 67938434 67938434 G A STARD8 Missense_Mutation p.D560N 1.00 deleterious(0) probably_damaging(0.973) TCGA-DA-A3F5-06 10 101163500 101163500 G A GOT1 Silent p.S258S 0.54 TCGA-DA-A3F5-06 10 101163501 101163501 G A GOT1 Missense_Mutation p.S258F 0.55 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 10 24820871 24820871 G A KIAA1217 Silent p.T1065T 0.60 TCGA-DA-A3F5-06 10 26880239 26880239 G A LINC00264 Intron 0.58 TCGA-DA-A3F5-06 10 29813449 29813449 C T SVIL Missense_Mutation p.M846I 0.44 tolerated(0.07) benign(0.027) TCGA-DA-A3F5-06 10 35929025 35929025 C T FZD8 Missense_Mutation p.A445T 0.31 deleterious(0.02) possibly_damaging(0.867) TCGA-DA-A3F5-06 10 38645379 38645379 G A HSD17B7P2 RNA 0.34 TCGA-DA-A3F5-06 10 5139671 5139671 G A AKR1C3 Missense_Mutation p.E100K 0.39 deleterious(0.04) benign(0.031) TCGA-DA-A3F5-06 10 55590913 55590913 C T PCDH15 Intron 0.44 TCGA-DA-A3F5-06 10 5953047 5953047 G T FBXO18 Silent p.V440V 0.43 TCGA-DA-A3F5-06 10 5969458 5969458 G A FBXO18 Missense_Mutation p.R979H 0.34 tolerated(0.57) benign(0.022) TCGA-DA-A3F5-06 10 64022432 64022432 G A RTKN2 Missense_Mutation p.S70L 0.45 tolerated(0.18) benign(0.003) TCGA-DA-A3F5-06 10 96443650 96443650 G A CYP2C18 Missense_Mutation p.G25E 0.47 tolerated(0.18) benign(0.011) TCGA-DA-A3F5-06 10 97779486 97779486 A G CC2D2B Missense_Mutation p.T229A 0.45 tolerated(0.12) benign(0.061) TCGA-DA-A3F5-06 11 116747031 116747031 G A SIK3 Silent p.L287L 0.23 TCGA-DA-A3F5-06 11 117153873 117153873 G A RNF214 Missense_Mutation p.V665I 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A3F5-06 11 121000698 121000698 C T TECTA Nonsense_Mutation p.R907* 0.09 TCGA-DA-A3F5-06 11 121495791 121495791 C T SORL1 Intron 0.30 TCGA-DA-A3F5-06 11 125547954 125547954 C T ACRV1 Silent p.E97E 0.12 TCGA-DA-A3F5-06 11 125891409 125891409 G C CDON Missense_Mutation p.A28G 0.48 deleterious(0.01) possibly_damaging(0.497) TCGA-DA-A3F5-06 11 129814664 129814664 A C PRDM10 Splice_Site p.X254_splice 0.29 TCGA-DA-A3F5-06 11 1651347 1651347 G C KRTAP5-5 Missense_Mutation p.G93R 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-DA-A3F5-06 11 17191199 17191249 TTCTTCTTTGTCCACATCTTTTGCTCTTGTTGGTTCCGGATGTGAAGATGG - PIK3C2A In_Frame_Del p.P14_E30del 0.21 TCGA-DA-A3F5-06 11 21581830 21581830 C T NELL1 Missense_Mutation p.P628S 0.49 tolerated(0.55) benign(0.441) TCGA-DA-A3F5-06 11 32860464 32860464 A T PRRG4 Missense_Mutation p.T102S 0.10 tolerated(0.79) benign(0.003) TCGA-DA-A3F5-06 11 32860465 32860465 C T PRRG4 Missense_Mutation p.T102I 0.10 tolerated(0.24) benign(0.003) TCGA-DA-A3F5-06 11 3381134 3381134 G A ZNF195 Silent p.S368S 0.20 TCGA-DA-A3F5-06 11 46406672 46406672 C T CHRM4 Missense_Mutation p.R479K 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A3F5-06 11 48157689 48157689 C T PTPRJ Missense_Mutation p.H572Y 0.24 tolerated(0.38) benign(0.048) TCGA-DA-A3F5-06 11 4825016 4825016 G A OR52R1 Missense_Mutation p.R199C 0.14 tolerated(0.19) benign(0.082) TCGA-DA-A3F5-06 11 5364717 5364717 G T OR51B5 Missense_Mutation p.T13N 0.11 deleterious(0.01) benign(0.111) TCGA-DA-A3F5-06 11 55406281 55406281 G A OR4P4 Missense_Mutation p.G150R 0.12 deleterious(0) probably_damaging(0.989) TCGA-DA-A3F5-06 11 55563665 55563665 A G OR5D14 Missense_Mutation p.T212A 0.11 deleterious(0) possibly_damaging(0.507) TCGA-DA-A3F5-06 11 57947173 57947173 T C OR9Q1 Missense_Mutation p.L86P 0.40 deleterious(0.03) possibly_damaging(0.62) TCGA-DA-A3F5-06 11 58294880 58294880 G A LPXN 3'UTR 0.17 TCGA-DA-A3F5-06 11 5862252 5862252 G A OR52E6 Silent p.I292I 0.18 TCGA-DA-A3F5-06 11 59271951 59271951 G A OR4D11 Silent p.L301L 0.22 TCGA-DA-A3F5-06 11 65124274 65124274 G A TIGD3 Missense_Mutation p.G332E 0.38 deleterious(0.02) benign(0.272) TCGA-DA-A3F5-06 11 66191724 66191724 C T NPAS4 Missense_Mutation p.L455F 0.17 tolerated_low_confidence(0.62) benign(0) TCGA-DA-A3F5-06 11 70026114 70026114 C T ANO1 Silent p.I785I 0.28 TCGA-DA-A3F5-06 11 8248605 8248605 C T LMO1 Silent p.L94L 0.25 TCGA-DA-A3F5-06 11 85445276 85445276 T C SYTL2 Missense_Mutation p.K365E 0.13 tolerated(0.27) benign(0.097) TCGA-DA-A3F5-06 11 9069050 9069050 G A SCUBE2 Missense_Mutation p.R619C 0.13 deleterious(0) probably_damaging(0.919) TCGA-DA-A3F5-06 12 101333113 101333113 C T ANO4 Missense_Mutation p.L26F 0.42 tolerated_low_confidence(0.48) benign(0.004) TCGA-DA-A3F5-06 12 105440679 105440679 G A ALDH1L2 Silent p.L585L 0.14 TCGA-DA-A3F5-06 12 106824069 106824069 A G POLR3B Missense_Mutation p.R428G 0.16 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F5-06 12 108011178 108011178 G A BTBD11 Missense_Mutation p.M732I 0.11 deleterious(0.04) possibly_damaging(0.447) TCGA-DA-A3F5-06 12 11420548 11420548 C T PRB3 Intron 0.24 TCGA-DA-A3F5-06 12 115120881 115120881 G T TBX3 Missense_Mutation p.P42H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 12 117996320 117996320 G A KSR2 Missense_Mutation p.H462Y 0.37 tolerated(0.42) benign(0.099) TCGA-DA-A3F5-06 12 120741433 120741433 G A SIRT4 Silent p.P23P 0.13 TCGA-DA-A3F5-06 12 12640061 12640061 G A DUSP16 Missense_Mutation p.P198S 0.22 deleterious(0) probably_damaging(0.971) TCGA-DA-A3F5-06 12 129558864 129558864 G A TMEM132D Silent p.F952F 0.25 TCGA-DA-A3F5-06 12 130919399 130919399 C G RIMBP2 Missense_Mutation p.E694D 0.15 tolerated(0.18) benign(0.028) TCGA-DA-A3F5-06 12 2714268 2714268 G A CACNA1C Silent p.V1014V 0.28 TCGA-DA-A3F5-06 12 33592491 33592491 C T SYT10 5'UTR 0.33 TCGA-DA-A3F5-06 12 45168628 45168628 C T NELL2 Missense_Mutation p.G349E 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 12 46633606 46633606 G A SLC38A1 5'UTR 0.33 TCGA-DA-A3F5-06 12 4702206 4702206 G A DYRK4 Missense_Mutation p.E53K 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 12 54367468 54367468 C T HOXC11 Missense_Mutation p.P148L 0.29 deleterious(0.03) probably_damaging(1) TCGA-DA-A3F5-06 12 55356925 55356925 G A TESPA1 Missense_Mutation p.H253Y 0.09 deleterious(0.05) possibly_damaging(0.713) TCGA-DA-A3F5-06 12 55641111 55641111 G A OR6C74 Missense_Mutation p.G14R 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A3F5-06 12 55820527 55820527 G A OR6C76 Missense_Mutation p.D164N 0.45 deleterious_low_confidence(0.03) probably_damaging(0.936) TCGA-DA-A3F5-06 12 56630755 56630755 C T SLC39A5 Silent p.T416T 0.40 TCGA-DA-A3F5-06 12 56708919 56708919 C G CNPY2 Missense_Mutation p.C28S 0.35 deleterious(0.03) possibly_damaging(0.743) TCGA-DA-A3F5-06 12 57485018 57485018 G A NAB2 Missense_Mutation p.G65E 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 12 6483883 6483883 C T SCNN1A Missense_Mutation p.G82R 0.23 tolerated(0.06) probably_damaging(0.991) TCGA-DA-A3F5-06 12 6859156 6859156 C G MLF2 Missense_Mutation p.R139S 0.10 deleterious(0) possibly_damaging(0.561) TCGA-DA-A3F5-06 12 7188537 7188537 C T C1R Missense_Mutation p.G421S 0.13 deleterious(0.02) probably_damaging(0.985) TCGA-DA-A3F5-06 12 72893278 72893278 G A TRHDE Missense_Mutation p.E484K 0.08 tolerated(1) benign(0.124) TCGA-DA-A3F5-06 12 7651747 7651747 C T CD163 Silent p.G165G 0.27 TCGA-DA-A3F5-06 12 80714217 80714217 C T OTOGL Missense_Mutation p.S1264F 0.20 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F5-06 12 81102648 81102648 C T MYF6 Missense_Mutation p.S213L 0.33 deleterious(0.04) probably_damaging(0.953) TCGA-DA-A3F5-06 12 8248775 8248775 C T NECAP1 3'UTR 0.40 TCGA-DA-A3F5-06 12 8377432 8377432 C T FAM90A1 5'UTR 0.45 TCGA-DA-A3F5-06 12 86199525 86199525 C T RASSF9 Missense_Mutation p.R88K 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 12 97133780 97133780 C T C12orf55 Missense_Mutation p.L2338F 0.06 deleterious(0) benign(0) TCGA-DA-A3F5-06 13 109704766 109704766 G A MYO16 Silent p.K975K 0.15 TCGA-DA-A3F5-06 13 21172798 21172798 C T IFT88 Silent p.F210F 0.11 TCGA-DA-A3F5-06 13 23908710 23908710 A T SACS Nonsense_Mutation p.L3102* 0.16 TCGA-DA-A3F5-06 13 29599548 29599548 G A MTUS2 Missense_Mutation p.G248E 0.19 tolerated(0.88) benign(0.013) TCGA-DA-A3F5-06 13 42393431 42393431 C T VWA8 Missense_Mutation p.E598K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F5-06 13 46425796 46425796 G A SIAH3 5'UTR 0.32 TCGA-DA-A3F5-06 13 46425797 46425797 G A SIAH3 5'UTR 0.32 TCGA-DA-A3F5-06 13 52549006 52549006 C A ATP7B Missense_Mutation p.G117V 0.16 tolerated(0.17) benign(0.219) TCGA-DA-A3F5-06 13 53216987 53216987 C T HNRNPA1L2 Silent p.H120H 0.18 TCGA-DA-A3F5-06 14 105418987 105418987 G A AHNAK2 Missense_Mutation p.P934L 0.54 probably_damaging(0.999) TCGA-DA-A3F5-06 14 22465947 22465947 C T TRAV17 Missense_Mutation p.S8F 0.31 deleterious(0.01) possibly_damaging(0.509) TCGA-DA-A3F5-06 14 23883309 23883309 C T MYH7 Silent p.T1854T 0.54 TCGA-DA-A3F5-06 14 24731050 24731050 G A TGM1 Missense_Mutation p.S120L 0.51 tolerated(0.17) benign(0.059) TCGA-DA-A3F5-06 14 65499385 65499385 C T FNTB Silent p.L221L 0.35 TCGA-DA-A3F5-06 14 72128159 72128159 C T SIPA1L1 Missense_Mutation p.P744S 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A3F5-06 14 73538452 73538452 C T RBM25 Missense_Mutation p.P35S 0.48 benign(0.068) TCGA-DA-A3F5-06 14 81610646 81610646 C T TSHR Silent p.T748T 0.19 TCGA-DA-A3F5-06 15 25223563 25223563 C T SNRPN Missense_Mutation p.P232L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-DA-A3F5-06 15 25344685 25344685 A G SNORD116-26 RNA 0.25 TCGA-DA-A3F5-06 15 50223484 50223484 G A ATP8B4 Nonsense_Mutation p.Q492* 0.25 TCGA-DA-A3F5-06 15 50884667 50884667 C T TRPM7 Silent p.S1255S 0.12 TCGA-DA-A3F5-06 15 54307555 54307555 C T UNC13C Silent p.L819L 0.52 TCGA-DA-A3F5-06 15 54307936 54307936 G A UNC13C Missense_Mutation p.E946K 0.31 deleterious_low_confidence(0.04) benign(0.001) TCGA-DA-A3F5-06 15 74474769 74474769 C T STRA6 Missense_Mutation p.G484R 0.18 tolerated(0.06) possibly_damaging(0.859) TCGA-DA-A3F5-06 15 74636322 74636322 C T CYP11A1 Missense_Mutation p.V213I 0.17 tolerated(0.1) benign(0.145) TCGA-DA-A3F5-06 15 90213233 90213233 G A PLIN1 Silent p.L192L 0.44 TCGA-DA-A3F5-06 15 93492257 93492257 C T CHD2 Nonsense_Mutation p.R485* 0.09 TCGA-DA-A3F5-06 16 15818207 15818207 C T MYH11 Silent p.E1399E 0.28 TCGA-DA-A3F5-06 16 18810024 18810024 G - ARL6IP1 Frame_Shift_Del p.L57* 0.12 TCGA-DA-A3F5-06 16 19838399 19838399 C T IQCK Missense_Mutation p.R248C 0.33 deleterious(0) probably_damaging(0.983) TCGA-DA-A3F5-06 16 20681297 20681297 C T ACSM1 Missense_Mutation p.R255Q 0.31 tolerated(0.09) benign(0.008) TCGA-DA-A3F5-06 16 22135021 22135021 G A VWA3A Missense_Mutation p.E509K 0.16 deleterious(0) probably_damaging(0.97) TCGA-DA-A3F5-06 16 22268095 22268095 C T EEF2K Silent p.I215I 0.35 TCGA-DA-A3F5-06 16 22358900 22358900 C T CDR2 Missense_Mutation p.E251K 0.14 deleterious(0) possibly_damaging(0.795) TCGA-DA-A3F5-06 16 25251875 25251875 C T ZKSCAN2 Silent p.Q722Q 0.30 TCGA-DA-A3F5-06 16 29998700 29998700 G A TAOK2 Missense_Mutation p.R1036Q 0.38 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-DA-A3F5-06 16 30616403 30616403 C T ZNF689 Missense_Mutation p.G229R 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 16 31539884 31539884 C T AHSP Nonsense_Mutation p.Q61* 0.17 TCGA-DA-A3F5-06 16 3433301 3433301 G A ZSCAN32 Missense_Mutation p.H337Y 0.15 tolerated(1) benign(0.071) TCGA-DA-A3F5-06 16 4016009 4016009 C T ADCY9 Missense_Mutation p.E1277K 0.35 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-DA-A3F5-06 16 46993207 46993207 G A DNAJA2 Missense_Mutation p.P300L 0.46 deleterious(0.01) possibly_damaging(0.767) TCGA-DA-A3F5-06 16 58749996 58749996 G A GOT2 Missense_Mutation p.P314L 0.53 deleterious(0.01) possibly_damaging(0.903) TCGA-DA-A3F5-06 16 71209557 71209557 C T HYDIN Missense_Mutation p.G157R 0.27 probably_damaging(0.998) TCGA-DA-A3F5-06 16 82033623 82033623 C T SDR42E1 Missense_Mutation p.R92Q 0.32 tolerated(0.11) benign(0.037) TCGA-DA-A3F5-06 16 86601503 86601503 C T FOXC2 Missense_Mutation p.P188S 0.21 tolerated(0.4) benign(0.001) TCGA-DA-A3F5-06 17 15234658 15234658 G A TEKT3 Missense_Mutation p.P82L 0.58 deleterious(0) benign(0.016) TCGA-DA-A3F5-06 17 16068444 16068444 G A NCOR1 Missense_Mutation p.P156L 0.21 benign(0.027) TCGA-DA-A3F5-06 17 28408001 28408001 T C EFCAB5 Splice_Site p.X1142_splice 0.43 TCGA-DA-A3F5-06 17 34171094 34171094 T C TAF15 Silent p.Y340Y 0.59 TCGA-DA-A3F5-06 17 3518752 3518752 C T SHPK Silent p.T301T 0.52 TCGA-DA-A3F5-06 17 36895320 36895320 C T PCGF2 Splice_Site p.X106_splice 0.12 TCGA-DA-A3F5-06 17 39535262 39535262 C T KRT34 Missense_Mutation p.R390Q 0.12 tolerated(0.06) probably_damaging(0.986) TCGA-DA-A3F5-06 17 39725840 39725840 C T KRT9 Splice_Site p.X295_splice 0.59 TCGA-DA-A3F5-06 17 39780634 39780634 C T KRT17 Missense_Mutation p.G43E 0.35 deleterious(0.03) probably_damaging(0.972) TCGA-DA-A3F5-06 17 40453367 40453367 T C STAT5A Missense_Mutation p.L355P 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 17 43005640 43005640 C G KIF18B Missense_Mutation p.G677A 0.59 tolerated(0.82) benign(0.005) TCGA-DA-A3F5-06 17 54559724 54559724 A G ANKFN1 Missense_Mutation p.N703S 0.47 tolerated(0.79) benign(0.004) TCGA-DA-A3F5-06 17 57756867 57756867 C T CLTC Missense_Mutation p.P969L 0.24 tolerated(0.06) benign(0.355) TCGA-DA-A3F5-06 17 60088523 60088523 A G MED13 Missense_Mutation p.I452T 0.15 tolerated(0.4) benign(0.001) TCGA-DA-A3F5-06 17 61601559 61601559 G A KCNH6 Missense_Mutation p.D46N 0.13 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F5-06 17 6364707 6364707 T G PITPNM3 Missense_Mutation p.N826H 0.43 tolerated(0.38) benign(0.232) TCGA-DA-A3F5-06 17 65850419 65850419 G A BPTF Nonsense_Mutation p.W326* 0.13 TCGA-DA-A3F5-06 17 66268882 66268882 G A SLC16A6 Missense_Mutation p.P135S 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 17 76201792 76201792 C T AFMID Silent p.F251F 0.09 TCGA-DA-A3F5-06 17 76490699 76490699 C T DNAH17 Silent p.R2068R 0.43 TCGA-DA-A3F5-06 17 78796099 78796099 G A RPTOR Missense_Mutation p.R330Q 0.17 tolerated(0.06) possibly_damaging(0.865) TCGA-DA-A3F5-06 17 79637484 79637484 G A CCDC137 Splice_Site p.X166_splice 0.61 TCGA-DA-A3F5-06 18 13099491 13099491 C A CEP192 Missense_Mutation p.L2192I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A3F5-06 18 23615044 23615044 G A SS18 Missense_Mutation p.P341S 0.31 tolerated_low_confidence(0.43) unknown(0) TCGA-DA-A3F5-06 18 28584252 28584252 C T DSC3 Missense_Mutation p.G657S 0.11 deleterious(0.04) probably_damaging(1) TCGA-DA-A3F5-06 18 28968393 28968393 C T DSG4 Nonsense_Mutation p.R94* 0.18 TCGA-DA-A3F5-06 18 31326113 31326113 G T ASXL3 Missense_Mutation p.V2101F 0.33 probably_damaging(0.961) TCGA-DA-A3F5-06 18 40850435 40850435 G A SYT4 Silent p.S383S 0.28 TCGA-DA-A3F5-06 18 43310388 43310388 C T SLC14A1 Missense_Mutation p.L91F 0.24 tolerated(0.1) benign(0.093) TCGA-DA-A3F5-06 18 47812290 47812290 C G CXXC1 Missense_Mutation p.Q156H 0.14 tolerated(0.59) benign(0.138) TCGA-DA-A3F5-06 18 56171359 56171359 G A ALPK2 Silent p.I2017I 0.16 TCGA-DA-A3F5-06 18 61621654 61621654 A C HMSD Missense_Mutation p.S29R 0.27 deleterious(0.03) benign(0.106) TCGA-DA-A3F5-06 18 66346769 66346769 C T TMX3 Splice_Site p.X346_splice 0.13 TCGA-DA-A3F5-06 18 72201829 72201829 G C CNDP1 5'UTR 0.23 TCGA-DA-A3F5-06 18 76755153 76755153 C T SALL3 Silent p.S1054S 0.16 TCGA-DA-A3F5-06 19 16513163 16513163 G A EPS15L1 Missense_Mutation p.S587F 0.15 deleterious(0) benign(0.336) TCGA-DA-A3F5-06 19 36303154 36303154 T C PRODH2 Missense_Mutation p.N207S 0.48 deleterious(0.02) possibly_damaging(0.78) TCGA-DA-A3F5-06 19 38706802 38706802 G A DPF1 Silent p.S319S 0.21 TCGA-DA-A3F5-06 19 38980715 38980715 G A RYR1 Splice_Site p.X1939_splice 0.13 TCGA-DA-A3F5-06 19 39516072 39516072 G A FBXO27 Silent p.I277I 0.15 TCGA-DA-A3F5-06 19 40741909 40741909 G A AKT2 Missense_Mutation p.H355Y 0.51 tolerated(0.08) possibly_damaging(0.902) TCGA-DA-A3F5-06 19 42584406 42584406 C T ZNF574 Missense_Mutation p.P550S 0.19 deleterious(0.02) probably_damaging(0.96) TCGA-DA-A3F5-06 19 43680244 43680244 C T PSG5 Missense_Mutation p.D163N 0.11 deleterious(0.03) probably_damaging(0.959) TCGA-DA-A3F5-06 19 44469185 44469185 C T ZNF221 Silent p.Y55Y 0.10 TCGA-DA-A3F5-06 19 44981860 44981860 G A ZNF180 Nonsense_Mutation p.Q280* 0.22 TCGA-DA-A3F5-06 19 46355791 46355791 G A SYMPK Silent p.V58V 0.11 TCGA-DA-A3F5-06 19 46811540 46811540 G A HIF3A Silent p.Q142Q 0.42 TCGA-DA-A3F5-06 19 49102448 49102448 C T SULT2B1 Missense_Mutation p.R295C 0.14 deleterious(0.03) benign(0.167) TCGA-DA-A3F5-06 19 50099390 50099390 C T PRR12 Silent p.L600L 0.07 TCGA-DA-A3F5-06 19 50335259 50335259 G A MED25 Missense_Mutation p.V433M 0.14 deleterious(0) probably_damaging(0.98) TCGA-DA-A3F5-06 19 53269236 53269236 G A ZNF600 Silent p.F591F 0.11 TCGA-DA-A3F5-06 19 54496162 54496162 G A CACNG6 Missense_Mutation p.E11K 0.38 deleterious(0) possibly_damaging(0.538) TCGA-DA-A3F5-06 19 54844777 54844777 C T LILRA4 3'UTR 0.50 TCGA-DA-A3F5-06 19 54844778 54844778 C T LILRA4 3'UTR 0.50 TCGA-DA-A3F5-06 19 55481377 55481377 G T NLRP2 5'UTR 0.47 TCGA-DA-A3F5-06 19 55828329 55828329 C T TMEM150B Silent p.K110K 0.52 TCGA-DA-A3F5-06 19 56702275 56702275 C T ZSCAN5B Missense_Mutation p.D224N 0.48 tolerated(0.25) benign(0.008) TCGA-DA-A3F5-06 19 57326480 57326480 C A PEG3 Missense_Mutation p.E1110D 0.42 tolerated(0.16) benign(0.193) TCGA-DA-A3F5-06 19 57670603 57670603 C T DUXA Missense_Mutation p.R75K 0.41 tolerated(0.43) benign(0.008) TCGA-DA-A3F5-06 19 746736 746736 G A PALM Silent p.A362A 0.45 TCGA-DA-A3F5-06 19 8539077 8539077 A T HNRNPM Missense_Mutation p.M357L 0.23 tolerated(0.2) benign(0.001) TCGA-DA-A3F5-06 19 9072618 9072618 G A MUC16 Missense_Mutation p.P4943L 0.38 unknown(0) TCGA-DA-A3F5-06 19 9082451 9082451 T C MUC16 Missense_Mutation p.T3122A 0.29 unknown(0) TCGA-DA-A3F5-06 19 9361872 9361872 C T OR7E24 Silent p.S51S 0.36 TCGA-DA-A3F5-06 1 109716108 109716108 C T KIAA1324 Nonsense_Mutation p.R237* 0.21 TCGA-DA-A3F5-06 1 12888659 12888659 G A PRAMEF11 5'UTR 0.14 TCGA-DA-A3F5-06 1 12941950 12941950 G A PRAMEF4 Silent p.I200I 0.18 TCGA-DA-A3F5-06 1 144912150 144912150 G A PDE4DIP Missense_Mutation p.L709F 0.08 tolerated(0.2) possibly_damaging(0.522) TCGA-DA-A3F5-06 1 146658593 146658593 C T FMO5 Silent p.R496R 0.35 TCGA-DA-A3F5-06 1 147091879 147091879 C G BCL9 Missense_Mutation p.Q640E 0.11 deleterious(0.01) possibly_damaging(0.759) TCGA-DA-A3F5-06 1 151495982 151495982 C T CGN Nonsense_Mutation p.R405* 0.51 TCGA-DA-A3F5-06 1 152325496 152325496 G A FLG2 Missense_Mutation p.S1589L 0.48 probably_damaging(0.997) TCGA-DA-A3F5-06 1 152382652 152382652 C T CRNN Silent p.V302V 0.48 TCGA-DA-A3F5-06 1 152733646 152733646 C T KPRP Missense_Mutation p.P528S 0.18 tolerated_low_confidence(0.11) probably_damaging(0.932) TCGA-DA-A3F5-06 1 153333202 153333202 A T S100A9 Missense_Mutation p.E78V 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 1 155316192 155316192 G A ASH1L Silent p.D2624D 0.15 TCGA-DA-A3F5-06 1 157548609 157548609 G A FCRL4 Silent p.S437S 0.30 TCGA-DA-A3F5-06 1 157740251 157740251 T C FCRL2 Silent p.G86G 0.33 TCGA-DA-A3F5-06 1 158263276 158263276 C G CD1C 3'UTR 0.04 TCGA-DA-A3F5-06 1 158324176 158324176 C T CD1E Missense_Mutation p.A23V 0.12 tolerated(0.66) possibly_damaging(0.541) TCGA-DA-A3F5-06 1 158549333 158549333 G A OR10X1 Silent p.F119F 0.17 TCGA-DA-A3F5-06 1 158632604 158632604 G A SPTA1 Silent p.T784T 0.13 TCGA-DA-A3F5-06 1 162353105 162353105 G A C1orf226 Missense_Mutation p.G194R 0.37 deleterious(0) probably_damaging(0.994) TCGA-DA-A3F5-06 1 166904697 166904697 C T ILDR2 Missense_Mutation p.A241T 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-DA-A3F5-06 1 171178118 171178118 G A FMO2 3'UTR 0.43 TCGA-DA-A3F5-06 1 173503740 173503740 T G SLC9C2 Silent p.I619I 0.15 TCGA-DA-A3F5-06 1 176640103 176640103 T C PAPPA2 Intron 0.15 TCGA-DA-A3F5-06 1 179460760 179460760 C T AXDND1 Silent p.L727L 0.16 TCGA-DA-A3F5-06 1 186106752 186106752 C T HMCN1 Nonsense_Mutation p.Q4569* 0.57 TCGA-DA-A3F5-06 1 18809066 18809066 C A KLHDC7A Silent p.R531R 0.20 TCGA-DA-A3F5-06 1 196743953 196743953 G A CFHR3 5'UTR 0.29 TCGA-DA-A3F5-06 1 196874369 196874369 G A CFHR4 Missense_Mutation p.G129R 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A3F5-06 1 197704762 197704762 C T DENND1B Intron 0.11 TCGA-DA-A3F5-06 1 207647034 207647034 G A CR2 Missense_Mutation p.G708E 0.18 tolerated(0.22) probably_damaging(0.999) TCGA-DA-A3F5-06 1 21011406 21011406 G A KIF17 Silent p.P709P 0.28 TCGA-DA-A3F5-06 1 211462663 211462663 A T RCOR3 Silent p.A288A 0.22 TCGA-DA-A3F5-06 1 216680255 216680255 G A ESRRG 3'UTR 0.12 TCGA-DA-A3F5-06 1 22214554 22214554 G A HSPG2 Nonsense_Mutation p.Q194* 0.37 TCGA-DA-A3F5-06 1 237167613 237167613 C G MT1HL1 Missense_Mutation p.K20N 0.18 deleterious(0.04) unknown(0) TCGA-DA-A3F5-06 1 24172603 24172603 G C FUCA1 Silent p.V407V 0.35 TCGA-DA-A3F5-06 1 245927409 245927409 C T SMYD3 Silent p.V373V 0.17 TCGA-DA-A3F5-06 1 247694951 247694951 G A OR2C3 Missense_Mutation p.P288L 0.43 deleterious(0) probably_damaging(0.997) TCGA-DA-A3F5-06 1 247737618 247737618 G A GCSAML Silent p.R114R 0.19 TCGA-DA-A3F5-06 1 32044857 32044857 C T TINAGL1 Silent p.N121N 0.29 TCGA-DA-A3F5-06 1 32745282 32745282 G A LCK Silent p.V325V 0.16 TCGA-DA-A3F5-06 1 32849430 32849430 C A BSDC1 Splice_Site p.X136_splice 0.24 TCGA-DA-A3F5-06 1 43675472 43675472 C T WDR65 Missense_Mutation p.S605F 0.11 deleterious(0) probably_damaging(0.985) TCGA-DA-A3F5-06 1 46073706 46073706 C T NASP Missense_Mutation p.P375S 0.20 tolerated_low_confidence(0.13) benign(0.009) TCGA-DA-A3F5-06 1 57157100 57157100 T C PRKAA2 Silent p.F90F 0.21 TCGA-DA-A3F5-06 1 60331594 60331594 A G HOOK1 Missense_Mutation p.M599V 0.07 deleterious(0.01) benign(0.057) TCGA-DA-A3F5-06 1 71418516 71418516 G A PTGER3 3'UTR 0.38 TCGA-DA-A3F5-06 1 7724488 7724488 C T CAMTA1 Silent p.V627V 0.21 TCGA-DA-A3F5-06 1 8397904 8397904 C T SLC45A1 Silent p.L542L 0.28 TCGA-DA-A3F5-06 1 94528173 94528173 A T ABCA4 Missense_Mutation p.Y633N 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 1 94953115 94953115 T G ABCD3 Missense_Mutation p.N305K 0.21 tolerated(1) benign(0.002) TCGA-DA-A3F5-06 20 15210650 15210650 T C MACROD2 Silent p.L161L 0.26 TCGA-DA-A3F5-06 20 22563676 22563676 G A FOXA2 Silent p.S68S 0.22 TCGA-DA-A3F5-06 20 2636095 2636095 G A NOP56 Missense_Mutation p.E232K 0.50 tolerated(0.31) benign(0.023) TCGA-DA-A3F5-06 20 3128839 3128839 T A FASTKD5 Missense_Mutation p.Q293L 0.33 deleterious(0.02) benign(0.205) TCGA-DA-A3F5-06 20 31889048 31889048 T C BPIFB1 Silent p.L253L 0.17 TCGA-DA-A3F5-06 20 44469643 44469643 C T SNX21 Silent p.A271A 0.33 TCGA-DA-A3F5-06 20 44469644 44469644 C T SNX21 Nonsense_Mutation p.Q272* 0.33 TCGA-DA-A3F5-06 20 44505977 44505977 C T ZSWIM3 Silent p.T260T 0.22 TCGA-DA-A3F5-06 20 60585143 60585143 G T TAF4 Missense_Mutation p.R574S 0.16 probably_damaging(0.968) TCGA-DA-A3F5-06 20 870890 870890 G A ANGPT4 Missense_Mutation p.A144V 0.29 deleterious(0.01) benign(0.118) TCGA-DA-A3F5-06 21 43161492 43161492 G A RIPK4 Missense_Mutation p.R621C 0.13 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 22 18028654 18028654 C A CECR2 Missense_Mutation p.P1205Q 0.11 tolerated(0.13) benign(0.057) TCGA-DA-A3F5-06 22 19950226 19950226 C T COMT Silent p.I59I 0.56 TCGA-DA-A3F5-06 22 22160206 22160206 G A MAPK1 Missense_Mutation p.S142L 0.06 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 22 22868569 22868569 C T ZNF280A Silent p.T462T 0.06 TCGA-DA-A3F5-06 22 24909338 24909338 G A UPB1 Missense_Mutation p.R169Q 0.27 tolerated(0.05) probably_damaging(1) TCGA-DA-A3F5-06 22 26222468 26222468 T C MYO18B Splice_Site p.X929_splice 0.40 TCGA-DA-A3F5-06 22 26242184 26242184 G A MYO18B Silent p.R1162R 0.12 TCGA-DA-A3F5-06 22 37962739 37962739 C T CDC42EP1 Missense_Mutation p.A128V 0.44 tolerated(0.22) benign(0.082) TCGA-DA-A3F5-06 22 45765886 45765886 G A SMC1B Missense_Mutation p.R790C 0.37 deleterious(0) probably_damaging(0.95) TCGA-DA-A3F5-06 22 46794535 46794535 C T CELSR1 Splice_Site p.X1805_splice 0.58 TCGA-DA-A3F5-06 2 102965595 102965595 G A IL1RL1 Missense_Mutation p.D392N 0.36 tolerated(0.67) benign(0.229) TCGA-DA-A3F5-06 2 106713260 106713260 G A UXS1 Nonsense_Mutation p.Q354* 0.33 TCGA-DA-A3F5-06 2 108487597 108487597 A C RGPD4 Missense_Mutation p.E1046A 0.28 tolerated(0.06) probably_damaging(0.94) TCGA-DA-A3F5-06 2 108489194 108489194 G A RGPD4 Silent p.L1578L 0.39 TCGA-DA-A3F5-06 2 11053017 11053017 C T KCNF1 Silent p.D155D 0.07 TCGA-DA-A3F5-06 2 113832941 113832941 G A IL1F10 Silent p.%3D 0.40 TCGA-DA-A3F5-06 2 113890416 113890416 G A IL1RN Missense_Mutation p.V171I 0.26 tolerated(0.94) benign(0.032) TCGA-DA-A3F5-06 2 128335766 128335766 C T MYO7B Missense_Mutation p.S303L 0.05 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 2 136567182 136567182 G A LCT Missense_Mutation p.S912F 0.29 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 2 141607881 141607881 G A LRP1B Missense_Mutation p.L1577F 0.25 possibly_damaging(0.587) TCGA-DA-A3F5-06 2 152737314 152737314 C T CACNB4 Silent p.E130E 0.33 TCGA-DA-A3F5-06 2 158153009 158153009 G A GALNT5 Missense_Mutation p.E661K 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-DA-A3F5-06 2 160885424 160885424 C T PLA2R1 Missense_Mutation p.D298N 0.21 tolerated(0.05) possibly_damaging(0.904) TCGA-DA-A3F5-06 2 167141030 167141030 G A SCN9A Missense_Mutation p.A636V 0.31 tolerated(0.39) benign(0.016) TCGA-DA-A3F5-06 2 168103758 168103758 G A XIRP2 Silent p.V1952V 0.24 TCGA-DA-A3F5-06 2 179605416 179605416 C T TTN Missense_Mutation p.E4182K 0.30 TCGA-DA-A3F5-06 2 179612932 179612932 G A TTN Intron 0.35 TCGA-DA-A3F5-06 2 179730554 179730554 C T CCDC141 Silent p.E888E 0.26 TCGA-DA-A3F5-06 2 180311376 180311376 C T ZNF385B Silent p.K264K 0.27 TCGA-DA-A3F5-06 2 189859820 189859820 G A COL3A1 Missense_Mutation p.E502K 0.22 unknown(0) TCGA-DA-A3F5-06 2 190608180 190608180 G A ANKAR Silent p.L1330L 0.34 TCGA-DA-A3F5-06 2 196636561 196636561 G A DNAH7 Silent p.V3752V 0.29 TCGA-DA-A3F5-06 2 198264885 198264885 T C SF3B1 Silent p.K969K 0.26 TCGA-DA-A3F5-06 2 200137016 200137016 G A SATB2 Missense_Mutation p.S707F 0.31 deleterious(0.02) benign(0.025) TCGA-DA-A3F5-06 2 200213782 200213782 G A SATB2 Missense_Mutation p.P272L 0.27 deleterious(0.02) benign(0.01) TCGA-DA-A3F5-06 2 217543762 217543762 C T IGFBP5 Silent p.E126E 0.20 TCGA-DA-A3F5-06 2 219114119 219114119 C T ARPC2 Nonsense_Mutation p.R237* 0.35 TCGA-DA-A3F5-06 2 220406541 220406541 G A CHPF Missense_Mutation p.P229S 0.44 tolerated(0.12) benign(0.097) TCGA-DA-A3F5-06 2 228882732 228882732 C T SPHKAP Silent p.A946A 0.39 TCGA-DA-A3F5-06 2 233399984 233399984 C T CHRND Missense_Mutation p.P506S 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A3F5-06 2 234402079 234402079 G A USP40 Missense_Mutation p.S981F 0.35 tolerated(0.12) possibly_damaging(0.567) TCGA-DA-A3F5-06 2 235950486 235950486 C T SH3BP4 Missense_Mutation p.A358V 0.25 deleterious(0.05) benign(0.443) TCGA-DA-A3F5-06 2 24974859 24974859 C T NCOA1 Missense_Mutation p.P1239S 0.41 tolerated(0.27) benign(0.004) TCGA-DA-A3F5-06 2 26203833 26203833 C T KIF3C Silent p.R318R 0.23 TCGA-DA-A3F5-06 2 28805000 28805000 G A PLB1 Silent p.E544E 0.39 TCGA-DA-A3F5-06 2 31167740 31167740 G A GALNT14 Missense_Mutation p.P276S 0.36 deleterious(0) probably_damaging(0.965) TCGA-DA-A3F5-06 2 3691490 3691490 C T COLEC11 Missense_Mutation p.R214C 0.28 deleterious(0) probably_damaging(0.993) TCGA-DA-A3F5-06 2 37543540 37543540 C T PRKD3 Missense_Mutation p.G43E 0.25 deleterious_low_confidence(0.01) benign(0.004) TCGA-DA-A3F5-06 2 43779019 43779019 G A THADA Silent p.L952L 0.39 TCGA-DA-A3F5-06 2 44102553 44102553 G A ABCG8 Splice_Site p.X586_splice 0.33 TCGA-DA-A3F5-06 2 79312339 79312339 C T REG1B 3'UTR 0.30 TCGA-DA-A3F5-06 2 95954337 95954337 G A PROM2 Missense_Mutation p.S814N 0.32 tolerated(0.07) benign(0.094) TCGA-DA-A3F5-06 2 96944683 96944683 G A SNRNP200 Silent p.D1729D 0.34 TCGA-DA-A3F5-06 2 98906990 98906990 G A VWA3B Missense_Mutation p.G1021E 0.28 tolerated(0.42) benign(0.019) TCGA-DA-A3F5-06 3 107096864 107096864 G A CCDC54 Missense_Mutation p.E144K 0.39 deleterious(0.01) possibly_damaging(0.891) TCGA-DA-A3F5-06 3 121712741 121712741 G A ILDR1 Silent p.V285V 0.41 TCGA-DA-A3F5-06 3 126191117 126191117 G C ZXDC Silent p.A313A 0.21 TCGA-DA-A3F5-06 3 126220130 126220130 G A UROC1 Missense_Mutation p.P359L 0.42 tolerated(0.68) benign(0) TCGA-DA-A3F5-06 3 126916060 126916060 C T C3orf56 Missense_Mutation p.P178S 0.44 tolerated(0.76) possibly_damaging(0.803) TCGA-DA-A3F5-06 3 132218016 132218016 T G DNAJC13 Silent p.T1401T 0.39 TCGA-DA-A3F5-06 3 135871300 135871300 C T MSL2 Silent p.E141E 0.35 TCGA-DA-A3F5-06 3 138739067 138739067 G A PRR23B Missense_Mutation p.P146L 0.20 tolerated(0.14) probably_damaging(0.971) TCGA-DA-A3F5-06 3 14802992 14802992 G A C3orf20 Missense_Mutation p.G789R 0.12 deleterious(0) probably_damaging(0.962) TCGA-DA-A3F5-06 3 15643376 15643376 C T BTD Nonsense_Mutation p.Q7* 0.28 TCGA-DA-A3F5-06 3 161221501 161221501 G A OTOL1 Missense_Mutation p.R402Q 0.62 deleterious(0.05) benign(0.398) TCGA-DA-A3F5-06 3 189838082 189838082 G A LEPREL1 Missense_Mutation p.R147C 0.22 deleterious(0) probably_damaging(0.943) TCGA-DA-A3F5-06 3 196311224 196311224 G A FBXO45 3'UTR 0.25 TCGA-DA-A3F5-06 3 38739432 38739432 G A SCN10A Missense_Mutation p.T1760I 0.24 deleterious(0.01) benign(0.365) TCGA-DA-A3F5-06 3 42680819 42680819 C T NKTR Missense_Mutation p.T1208I 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.829) TCGA-DA-A3F5-06 3 4776914 4776914 T C ITPR1 Missense_Mutation p.L1792P 0.31 deleterious(0) possibly_damaging(0.682) TCGA-DA-A3F5-06 3 49339873 49339873 G A USP4 Missense_Mutation p.R411W 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 3 51265425 51265425 G A DOCK3 Missense_Mutation p.G518E 0.28 deleterious(0.03) possibly_damaging(0.811) TCGA-DA-A3F5-06 3 51697054 51697054 C T RAD54L2 Missense_Mutation p.P1341L 0.28 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DA-A3F5-06 3 58087985 58087985 C T FLNB Silent p.V467V 0.37 TCGA-DA-A3F5-06 3 9827040 9827040 C T TADA3 Missense_Mutation p.G294R 0.21 deleterious(0.02) possibly_damaging(0.767) TCGA-DA-A3F5-06 3 99891217 99891217 C T CMSS1 Missense_Mutation p.P213S 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 4 115754820 115754820 C T NDST4 Missense_Mutation p.D780N 0.12 tolerated(0.52) benign(0.246) TCGA-DA-A3F5-06 4 119161842 119161842 C T NDST3 Missense_Mutation p.P761L 0.19 tolerated(0.44) benign(0.185) TCGA-DA-A3F5-06 4 120240779 120240779 C T FABP2 Missense_Mutation p.G87E 0.26 deleterious(0) possibly_damaging(0.712) TCGA-DA-A3F5-06 4 126373645 126373645 C T FAT4 Missense_Mutation p.S3825F 0.38 possibly_damaging(0.526) TCGA-DA-A3F5-06 4 140810909 140810909 G A MAML3 Silent p.L561L 0.29 TCGA-DA-A3F5-06 4 155241615 155241615 G A DCHS2 Missense_Mutation p.P1191S 0.39 deleterious(0.02) probably_damaging(0.976) TCGA-DA-A3F5-06 4 187175880 187175880 C T KLKB1 Silent p.I484I 0.18 TCGA-DA-A3F5-06 4 1919900 1919900 C T WHSC1 Silent p.A320A 0.48 TCGA-DA-A3F5-06 4 36069567 36069567 G A ARAP2 Missense_Mutation p.L1693F 0.22 tolerated_low_confidence(0.06) benign(0.025) TCGA-DA-A3F5-06 4 41270104 41270104 G A UCHL1 3'UTR 0.37 TCGA-DA-A3F5-06 4 56734621 56734621 G A EXOC1 Missense_Mutation p.E179K 0.49 deleterious(0.02) possibly_damaging(0.897) TCGA-DA-A3F5-06 4 70361118 70361118 G A UGT2B4 Silent p.F154F 0.25 TCGA-DA-A3F5-06 4 81966920 81966920 C T BMP3 Silent p.I115I 0.14 TCGA-DA-A3F5-06 5 101583064 101583064 C T SLCO4C1 Missense_Mutation p.G568E 0.29 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 5 114860482 114860482 T C FEM1C Silent p.L459L 0.15 TCGA-DA-A3F5-06 5 114860483 114860483 A T FEM1C Missense_Mutation p.L459Q 0.14 tolerated(0.56) benign(0.01) TCGA-DA-A3F5-06 5 131719902 131719902 G A SLC22A5 Silent p.Q187Q 0.31 TCGA-DA-A3F5-06 5 134229287 134229287 C T TXNDC15 Silent p.L233L 0.17 TCGA-DA-A3F5-06 5 13766132 13766132 C T DNAH5 Missense_Mutation p.E3352K 0.17 benign(0) TCGA-DA-A3F5-06 5 13766133 13766133 C T DNAH5 Silent p.Q3351Q 0.17 TCGA-DA-A3F5-06 5 13794093 13794093 A G DNAH5 Silent p.V2654V 0.38 TCGA-DA-A3F5-06 5 13823471 13823471 C T DNAH5 Silent p.E2196E 0.35 TCGA-DA-A3F5-06 5 13830871 13830886 GCGTGATGTAACATCT - DNAH5 Splice_Site p.X1961_splice 0.14 TCGA-DA-A3F5-06 5 13839571 13839571 C T DNAH5 Missense_Mutation p.E1926K 0.08 benign(0.305) TCGA-DA-A3F5-06 5 13911564 13911564 G A DNAH5 Silent p.F525F 0.15 TCGA-DA-A3F5-06 5 140202520 140202520 C T PCDHA5 Missense_Mutation p.S387F 0.41 tolerated_low_confidence(0.06) benign(0.274) TCGA-DA-A3F5-06 5 140746180 140746180 G T PCDHGA5 Silent p.A761A 0.39 TCGA-DA-A3F5-06 5 140788198 140788198 C T PCDHGB6 Silent p.F143F 0.48 TCGA-DA-A3F5-06 5 1443329 1443329 G A SLC6A3 5'UTR 0.46 TCGA-DA-A3F5-06 5 145246154 145246154 C T GRXCR2 Missense_Mutation p.M158I 0.39 tolerated(0.36) benign(0.003) TCGA-DA-A3F5-06 5 149216011 149216011 C T PPARGC1B Silent p.L665L 0.14 TCGA-DA-A3F5-06 5 149652701 149652701 T C CAMK2A Silent p.R28R 0.11 TCGA-DA-A3F5-06 5 167489158 167489158 G A TENM2 Missense_Mutation p.R468K 0.13 deleterious(0.03) possibly_damaging(0.849) TCGA-DA-A3F5-06 5 177022373 177022373 A G TMED9 Missense_Mutation p.M222V 0.21 deleterious(0.04) possibly_damaging(0.578) TCGA-DA-A3F5-06 5 178410195 178410195 C T GRM6 Missense_Mutation p.A718T 0.11 deleterious(0.03) benign(0.026) TCGA-DA-A3F5-06 5 179263543 179263543 G A SQSTM1 Missense_Mutation p.G425R 0.15 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F5-06 5 180625700 180625700 C T TRIM7 Silent p.K326K 0.26 TCGA-DA-A3F5-06 5 19721488 19721488 C T CDH18 Missense_Mutation p.G204E 0.38 deleterious(0.01) probably_damaging(1) TCGA-DA-A3F5-06 5 26903765 26903765 C T CDH9 Missense_Mutation p.G327E 0.33 deleterious(0) possibly_damaging(0.777) TCGA-DA-A3F5-06 5 35876106 35876106 C T IL7R Missense_Mutation p.P300S 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 5 36629592 36629592 C T SLC1A3 Silent p.S74S 0.20 TCGA-DA-A3F5-06 5 37007540 37007540 A T NIPBL Silent p.L1401L 0.26 TCGA-DA-A3F5-06 5 38458457 38458457 C T EGFLAM Missense_Mutation p.S919F 0.24 deleterious(0) probably_damaging(0.985) TCGA-DA-A3F5-06 5 38904069 38904069 G A OSMR Silent p.R359R 0.11 TCGA-DA-A3F5-06 5 41382030 41382030 C T PLCXD3 Missense_Mutation p.R237K 0.25 tolerated(0.34) benign(0.131) TCGA-DA-A3F5-06 5 78359496 78359496 C T DMGDH Silent p.G72G 0.18 TCGA-DA-A3F5-06 5 79035102 79035102 A T CMYA5 Missense_Mutation p.K3505I 0.44 probably_damaging(0.945) TCGA-DA-A3F5-06 5 80422926 80422926 C T RASGRF2 Missense_Mutation p.S877L 0.28 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-DA-A3F5-06 5 96460208 96460208 C T LIX1 Missense_Mutation p.V70M 0.21 deleterious(0) probably_damaging(0.947) TCGA-DA-A3F5-06 6 134350520 134350520 G A SLC2A12 Missense_Mutation p.S148F 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-DA-A3F5-06 6 160671634 160671634 G A SLC22A2 Missense_Mutation p.R207C 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A3F5-06 6 160905108 160905108 G A LPAL2 RNA 0.25 TCGA-DA-A3F5-06 6 31541186 31541186 C A LTA Missense_Mutation p.Q112K 0.17 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 6 32017243 32017243 G A TNXB 5'Flank 0.11 TCGA-DA-A3F5-06 6 33148928 33148928 C T COL11A2 Missense_Mutation p.G294E 0.15 probably_damaging(0.969) TCGA-DA-A3F5-06 6 33660659 33660659 G A ITPR3 Missense_Mutation p.C2538Y 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 6 35211401 35211401 G A SCUBE3 Missense_Mutation p.G647D 0.40 tolerated(0.14) probably_damaging(0.983) TCGA-DA-A3F5-06 6 38747801 38747801 T A DNAH8 Missense_Mutation p.I483N 0.46 probably_damaging(0.974) TCGA-DA-A3F5-06 6 38840746 38840746 C T DNAH8 Silent p.S2217S 0.41 TCGA-DA-A3F5-06 6 38950147 38950147 G A DNAH8 Missense_Mutation p.G4070E 0.14 probably_damaging(1) TCGA-DA-A3F5-06 6 43225617 43225617 G T TTBK1 Missense_Mutation p.W310L 0.16 probably_damaging(0.998) TCGA-DA-A3F5-06 6 54805838 54805838 G T FAM83B Missense_Mutation p.R690M 0.16 deleterious(0) probably_damaging(0.994) TCGA-DA-A3F5-06 6 57398258 57398258 G A PRIM2 Missense_Mutation p.E321K 0.11 deleterious(0) probably_damaging(0.955) TCGA-DA-A3F5-06 6 69758149 69758149 G A BAI3 Missense_Mutation p.G727E 0.56 deleterious(0.01) possibly_damaging(0.784) TCGA-DA-A3F5-06 6 7845444 7845444 C T BMP6 Missense_Mutation p.P246S 0.27 deleterious(0.02) probably_damaging(1) TCGA-DA-A3F5-06 7 100676562 100676562 C T MUC17 Missense_Mutation p.S622L 0.68 benign(0.307) TCGA-DA-A3F5-06 7 100679132 100679132 C T MUC17 Missense_Mutation p.P1479S 0.06 unknown(0) TCGA-DA-A3F5-06 7 117246731 117246731 G A CFTR Missense_Mutation p.G971E 0.58 tolerated(0.27) benign(0.01) TCGA-DA-A3F5-06 7 122338308 122338308 C T RNF133 Missense_Mutation p.R222K 0.10 tolerated(0.33) probably_damaging(0.978) TCGA-DA-A3F5-06 7 135311087 135311087 C G NUP205 Missense_Mutation p.R1591G 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-DA-A3F5-06 7 139106979 139106979 T G LUC7L2 Missense_Mutation p.S424A 0.13 deleterious_low_confidence(0) unknown(0) TCGA-DA-A3F5-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.68 deleterious(0) probably_damaging(0.967) TCGA-DA-A3F5-06 7 142149350 142149350 C T TRBV5-5 Missense_Mutation p.V15I 0.43 deleterious(0.01) benign(0.054) TCGA-DA-A3F5-06 7 142609657 142609657 C T TRPV5 Nonsense_Mutation p.W593* 0.10 TCGA-DA-A3F5-06 7 143807476 143807476 G A OR2A2 Silent p.E267E 0.60 TCGA-DA-A3F5-06 7 150069948 150069948 G T REPIN1 Missense_Mutation p.D597Y 0.11 deleterious(0) possibly_damaging(0.781) TCGA-DA-A3F5-06 7 150174550 150174550 G A GIMAP8 Silent p.A560A 0.08 TCGA-DA-A3F5-06 7 150327212 150327212 C T GIMAP6 Missense_Mutation p.E7K 0.04 tolerated(0.52) unknown(0) TCGA-DA-A3F5-06 7 150935419 150935419 G A CHPF2 Silent p.G657G 0.06 TCGA-DA-A3F5-06 7 156798384 156798384 G A MNX1 Missense_Mutation p.R346C 0.13 deleterious(0) probably_damaging(0.973) TCGA-DA-A3F5-06 7 27150120 27150120 C T HOXA3 Missense_Mutation p.R47Q 0.27 tolerated(0.06) possibly_damaging(0.614) TCGA-DA-A3F5-06 7 36561714 36561714 C T AOAH Silent p.Q510Q 0.18 TCGA-DA-A3F5-06 7 37298863 37298863 C T ELMO1 Silent p.R112R 0.49 TCGA-DA-A3F5-06 7 37988585 37988585 C T EPDR1 Missense_Mutation p.S138F 0.33 tolerated(0.69) benign(0.056) TCGA-DA-A3F5-06 7 37988586 37988586 C T EPDR1 Silent p.S138S 0.32 TCGA-DA-A3F5-06 7 44080522 44080522 C T DBNL 5'Flank 0.33 TCGA-DA-A3F5-06 7 44080523 44080523 C T DBNL 5'Flank 0.33 TCGA-DA-A3F5-06 7 5024696 5024696 T A RBAK-RBAKDN 5'UTR 0.14 TCGA-DA-A3F5-06 7 50597007 50597007 G A DDC Silent p.L157L 0.21 TCGA-DA-A3F5-06 7 5983092 5983092 G A RSPH10B Missense_Mutation p.R541C 0.16 tolerated(0.2) benign(0.001) TCGA-DA-A3F5-06 7 62752746 62752746 G A ZNF733P RNA 0.05 TCGA-DA-A3F5-06 7 81381327 81381327 G A HGF Intron 0.19 TCGA-DA-A3F5-06 7 82582033 82582033 C T PCLO Missense_Mutation p.D2746N 0.74 unknown(0) TCGA-DA-A3F5-06 7 92733753 92733753 C T SAMD9 Missense_Mutation p.R553K 0.10 tolerated(1) benign(0.004) TCGA-DA-A3F5-06 7 98524933 98524933 C T TRRAP Missense_Mutation p.P1040L 0.09 possibly_damaging(0.542) TCGA-DA-A3F5-06 8 101541941 101541941 G A ANKRD46 Missense_Mutation p.R41C 0.68 deleterious(0.03) benign(0.42) TCGA-DA-A3F5-06 8 10474018 10474018 A C RP1L1 Missense_Mutation p.M230R 0.10 possibly_damaging(0.897) TCGA-DA-A3F5-06 8 113267593 113267593 T C CSMD3 Missense_Mutation p.Y3309C 0.20 deleterious(0) probably_damaging(0.932) TCGA-DA-A3F5-06 8 11970602 11970602 G A ZNF705D Missense_Mutation p.G280R 0.26 tolerated(0.1) probably_damaging(1) TCGA-DA-A3F5-06 8 121222048 121222048 A G COL14A1 Missense_Mutation p.M459V 0.75 deleterious(0.01) benign(0.027) TCGA-DA-A3F5-06 8 125058134 125058134 G A FER1L6 Missense_Mutation p.D906N 0.76 tolerated(0.13) probably_damaging(1) TCGA-DA-A3F5-06 8 12870199 12870199 G A KIAA1456 Missense_Mutation p.G54E 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A3F5-06 8 22139008 22139008 G T PIWIL2 Missense_Mutation p.E135D 0.48 tolerated_low_confidence(0.19) benign(0.001) TCGA-DA-A3F5-06 8 22864244 22864244 C T RHOBTB2 Silent p.P184P 0.65 TCGA-DA-A3F5-06 8 73979570 73979570 C T SBSPON 3'UTR 0.68 TCGA-DA-A3F5-06 9 101796832 101796832 G A COL15A1 Missense_Mutation p.G682E 0.56 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 9 113275385 113275385 A G SVEP1 Missense_Mutation p.L375P 0.66 benign(0.323) TCGA-DA-A3F5-06 9 114325367 114325367 C T PTGR1 3'UTR 0.44 TCGA-DA-A3F5-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.49 TCGA-DA-A3F5-06 9 125377769 125377769 C T OR1Q1 Silent p.F251F 0.55 TCGA-DA-A3F5-06 9 125486956 125486956 C T OR1L4 Missense_Mutation p.P230S 0.21 tolerated(0.07) probably_damaging(1) TCGA-DA-A3F5-06 9 127920564 127920564 C T PPP6C Missense_Mutation p.G149E 0.39 deleterious(0) probably_damaging(0.94) TCGA-DA-A3F5-06 9 133755522 133755522 C T ABL1 Silent p.F516F 0.41 TCGA-DA-A3F5-06 9 136131475 136131475 C T RP11-430N14.4 5'Flank 0.50 TCGA-DA-A3F5-06 9 139907007 139907007 G A ABCA2 Missense_Mutation p.S1706F 0.51 tolerated(0.25) benign(0.177) TCGA-DA-A3F5-06 9 140331357 140331357 C T ENTPD8 Nonsense_Mutation p.W173* 0.49 TCGA-DA-A3F5-06 9 23704974 23704974 C T ELAVL2 Silent p.Q143Q 0.50 TCGA-DA-A3F5-06 9 27169478 27169478 C T TEK Missense_Mutation p.S160F 0.63 deleterious(0) possibly_damaging(0.829) TCGA-DA-A3F5-06 9 33265028 33265028 C T CHMP5 5'UTR 0.53 TCGA-DA-A3F5-06 9 33354888 33354888 A G NFX1 Silent p.K957K 0.51 TCGA-DA-A3F5-06 9 34491552 34491552 G A DNAI1 Silent p.Q227Q 0.52 TCGA-DA-A3F5-06 9 35703630 35703630 G A TLN1 Missense_Mutation p.A2134V 0.11 deleterious(0.01) possibly_damaging(0.689) TCGA-DA-A3F5-06 9 95888815 95888815 C T NINJ1 Missense_Mutation p.A61T 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-DA-A3F5-06 X 104463824 104463824 C T TEX13A Missense_Mutation p.R351K 0.61 tolerated(0.08) benign(0.003) TCGA-DA-A3F5-06 X 106205311 106205311 A C MORC4 Missense_Mutation p.L396R 0.64 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F5-06 X 148690451 148690451 T C TMEM185A Missense_Mutation p.M96V 0.67 tolerated(0.16) benign(0.023) TCGA-DA-A3F5-06 X 150912026 150912026 C A CNGA2 Missense_Mutation p.L351I 0.69 tolerated(0.12) possibly_damaging(0.801) TCGA-DA-A3F5-06 X 151900242 151900242 C T MAGEA12 Missense_Mutation p.D187N 0.68 tolerated(0.18) benign(0.251) TCGA-DA-A3F5-06 X 18220055 18220055 G T BEND2 Missense_Mutation p.P305T 0.58 deleterious(0.01) probably_damaging(0.989) TCGA-DA-A3F5-06 X 2408251 2408251 G A ZBED1 Silent p.T170T 0.12 TCGA-DA-A3F5-06 X 2408252 2408252 G T ZBED1 Missense_Mutation p.T170N 0.13 tolerated(0.49) benign(0.034) TCGA-DA-A3F5-06 X 30269299 30269299 A T MAGEB1 Missense_Mutation p.Y230F 0.47 tolerated(0.09) possibly_damaging(0.6) TCGA-DA-A3F5-06 X 48542297 48542297 C T WAS Nonsense_Mutation p.Q19* 0.51 TCGA-DA-A3F5-06 X 69825276 69825276 C T TEX11 Missense_Mutation p.R696K 0.63 tolerated(0.09) benign(0.098) TCGA-DA-A3F5-06 X 73045207 73045207 C T XIST RNA 0.64 TCGA-DA-A3F5-06 X 86880625 86880625 G T KLHL4 Nonsense_Mutation p.E385* 0.64 TCGA-DA-A3F8-06 10 100195400 100195400 G A HPS1 Missense_Mutation p.L83F 0.14 tolerated(0.17) probably_damaging(1) TCGA-DA-A3F8-06 10 101462315 101462315 G A ENTPD7 Missense_Mutation p.G490R 0.50 deleterious(0.05) probably_damaging(0.99) TCGA-DA-A3F8-06 10 101569906 101569906 G A ABCC2 Missense_Mutation p.E611K 0.21 tolerated(1) benign(0.009) TCGA-DA-A3F8-06 10 115338440 115338440 G A HABP2 Missense_Mutation p.R208K 0.18 tolerated(0.67) benign(0.004) TCGA-DA-A3F8-06 10 123892183 123892183 C T TACC2 Missense_Mutation p.T1878I 0.21 benign(0.005) TCGA-DA-A3F8-06 10 124097543 124097543 C T BTBD16 Silent p.I488I 0.33 TCGA-DA-A3F8-06 10 124214212 124214212 C T ARMS2 5'UTR 0.17 TCGA-DA-A3F8-06 10 13217513 13217513 C T MCM10 Missense_Mutation p.P200L 0.21 tolerated(0.21) benign(0.15) TCGA-DA-A3F8-06 10 13658471 13658471 A G RP11-295P9.3 Missense_Mutation p.H166R 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 10 14816561 14816561 C T FAM107B Silent p.T34T 0.19 TCGA-DA-A3F8-06 10 1779407 1779407 C T ADARB2 5'UTR 0.38 TCGA-DA-A3F8-06 10 18060348 18060348 C T TMEM236 Missense_Mutation p.S105F 0.37 tolerated(0.52) probably_damaging(0.998) TCGA-DA-A3F8-06 10 20432305 20432305 C T PLXDC2 Missense_Mutation p.P208L 0.12 deleterious(0.01) possibly_damaging(0.831) TCGA-DA-A3F8-06 10 21414945 21414945 C T C10orf113 Missense_Mutation p.R92Q 0.19 tolerated_low_confidence(1) benign(0) TCGA-DA-A3F8-06 10 24832141 24832141 G A KIAA1217 Silent p.T1314T 0.25 TCGA-DA-A3F8-06 10 25464519 25464519 C T GPR158 Missense_Mutation p.S57F 0.16 deleterious(0.05) benign(0.34) TCGA-DA-A3F8-06 10 25839976 25839976 T C GPR158 Silent p.F492F 0.18 TCGA-DA-A3F8-06 10 27687850 27687850 C T PTCHD3 Nonsense_Mutation p.W559* 0.16 TCGA-DA-A3F8-06 10 27702693 27702693 C T PTCHD3 Missense_Mutation p.E163K 0.18 tolerated(0.48) benign(0.028) TCGA-DA-A3F8-06 10 30318367 30318367 G A KIAA1462 Missense_Mutation p.S237F 0.15 tolerated(0.08) benign(0.409) TCGA-DA-A3F8-06 10 31810433 31810433 G A ZEB1 Missense_Mutation p.E725K 0.07 tolerated(0.25) benign(0.345) TCGA-DA-A3F8-06 10 32983862 32983862 A G C10ORF68 Silent p.S107S 0.18 TCGA-DA-A3F8-06 10 45648298 45648298 G A RP11-445N18.7 RNA 0.18 TCGA-DA-A3F8-06 10 48370513 48370513 A T ZNF488 5'UTR 0.29 TCGA-DA-A3F8-06 10 50121550 50121550 G A LRRC18 Silent p.A217A 0.25 TCGA-DA-A3F8-06 10 50531857 50531857 G A C10orf71 Missense_Mutation p.E423K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A3F8-06 10 61432545 61432545 G A SLC16A9 Missense_Mutation p.S108F 0.21 deleterious(0) probably_damaging(0.987) TCGA-DA-A3F8-06 10 61444018 61444018 C T SLC16A9 Nonsense_Mutation p.W11* 0.17 TCGA-DA-A3F8-06 10 61941146 61941146 G A ANK3 Nonsense_Mutation p.R709* 0.24 TCGA-DA-A3F8-06 10 68940120 68940120 G A CTNNA3 Silent p.A334A 0.24 TCGA-DA-A3F8-06 10 73046571 73046571 G A UNC5B Silent p.V226V 0.19 TCGA-DA-A3F8-06 10 74884003 74884003 G A NUDT13 Silent p.E130E 0.11 TCGA-DA-A3F8-06 10 88988294 88988294 G - NUTM2A Frame_Shift_Del p.Q220Rfs*5 0.09 TCGA-DA-A3F8-06 10 90582776 90582776 C T ANKRD22 Splice_Site p.X167_splice 0.25 TCGA-DA-A3F8-06 10 96447648 96447648 G A CYP2C18 Missense_Mutation p.R97K 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A3F8-06 10 96818161 96818161 T G CYP2C8 Missense_Mutation p.E250D 0.31 deleterious(0.03) benign(0.04) TCGA-DA-A3F8-06 10 96829157 96829157 C T CYP2C8 Translation_Start_Site p.M1? 0.08 deleterious(0) probably_damaging(0.971) TCGA-DA-A3F8-06 11 10015506 10015506 G A SBF2 Missense_Mutation p.P339S 0.09 tolerated(0.06) benign(0.126) TCGA-DA-A3F8-06 11 100221568 100221568 G A CNTN5 Missense_Mutation p.A1056T 0.16 deleterious(0.01) benign(0.226) TCGA-DA-A3F8-06 11 103070080 103070080 G A DYNC2H1 Missense_Mutation p.G2655R 0.27 probably_damaging(0.999) TCGA-DA-A3F8-06 11 103128461 103128461 G A DYNC2H1 Missense_Mutation p.R3536Q 0.25 benign(0.065) TCGA-DA-A3F8-06 11 104877954 104877954 C T CASP5 Missense_Mutation p.E110K 0.28 deleterious(0.04) possibly_damaging(0.481) TCGA-DA-A3F8-06 11 10515084 10515084 C T AMPD3 Silent p.V385V 0.19 TCGA-DA-A3F8-06 11 106849448 106849448 C T GUCY1A2 Silent p.K128K 0.23 TCGA-DA-A3F8-06 11 108031659 108031659 G A NPAT Missense_Mutation p.S1385F 0.11 deleterious(0) probably_damaging(0.952) TCGA-DA-A3F8-06 11 108409790 108409790 C T EXPH5 Missense_Mutation p.G135E 0.21 tolerated(0.22) benign(0.173) TCGA-DA-A3F8-06 11 108562653 108562653 C T DDX10 Silent p.I342I 0.26 TCGA-DA-A3F8-06 11 110451785 110451785 C T ARHGAP20 Missense_Mutation p.E629K 0.15 tolerated(0.05) probably_damaging(0.984) TCGA-DA-A3F8-06 11 113283333 113283333 C T DRD2 Silent p.R361R 0.21 TCGA-DA-A3F8-06 11 11348663 11348663 G A GALNT18 Silent p.I494I 0.19 TCGA-DA-A3F8-06 11 113816737 113816737 G A HTR3B Missense_Mutation p.E402K 0.19 tolerated(0.46) benign(0.421) TCGA-DA-A3F8-06 11 11400710 11400710 G A GALNT18 Missense_Mutation p.R233C 0.11 deleterious(0) possibly_damaging(0.803) TCGA-DA-A3F8-06 11 11400711 11400711 G A GALNT18 Silent p.I232I 0.12 TCGA-DA-A3F8-06 11 114453639 114453639 C T NXPE4 Silent p.E67E 0.20 TCGA-DA-A3F8-06 11 118373727 118373727 C T KMT2A Missense_Mutation p.H2374Y 0.15 possibly_damaging(0.656) TCGA-DA-A3F8-06 11 118951815 118951815 C T VPS11 Nonsense_Mutation p.Q817* 0.19 TCGA-DA-A3F8-06 11 11976597 11976597 C T USP47 Missense_Mutation p.P1192L 0.16 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 11 12029959 12029959 C T DKK3 Silent p.L57L 0.21 TCGA-DA-A3F8-06 11 120702667 120702667 G A GRIK4 Silent p.E206E 0.17 TCGA-DA-A3F8-06 11 122774920 122774920 C T C11orf63 Missense_Mutation p.S211L 0.16 deleterious(0.01) benign(0.031) TCGA-DA-A3F8-06 11 122931850 122931850 C T HSPA8 Missense_Mutation p.M61I 0.18 deleterious_low_confidence(0.04) benign(0.09) TCGA-DA-A3F8-06 11 123813765 123813765 G A OR6T1 Missense_Mutation p.R261C 0.15 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F8-06 11 124294222 124294222 G A OR8B4 Silent p.P182P 0.32 TCGA-DA-A3F8-06 11 124310050 124310050 G A OR8B8 Missense_Mutation p.S311F 0.17 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-DA-A3F8-06 11 124310841 124310841 G A OR8B8 Silent p.T47T 0.16 TCGA-DA-A3F8-06 11 124413467 124413467 G A OR8B12 Silent p.F28F 0.11 TCGA-DA-A3F8-06 11 124440102 124440102 C T OR8A1 Silent p.L46L 0.16 TCGA-DA-A3F8-06 11 124618415 124618415 C T VSIG2 Missense_Mutation p.R241Q 0.15 deleterious(0.05) possibly_damaging(0.905) TCGA-DA-A3F8-06 11 1262886 1262886 G A MUC5B Silent p.R1592R 0.20 TCGA-DA-A3F8-06 11 129306729 129306729 C T BARX2 Missense_Mutation p.P91S 0.17 tolerated(0.12) benign(0.017) TCGA-DA-A3F8-06 11 130332501 130332501 C T ADAMTS15 Silent p.S456S 0.19 TCGA-DA-A3F8-06 11 16847920 16847920 G A PLEKHA7 Missense_Mutation p.P364S 0.10 tolerated(0.14) benign(0.006) TCGA-DA-A3F8-06 11 16848076 16848076 C T PLEKHA7 Missense_Mutation p.E312K 0.13 tolerated(0.61) benign(0.03) TCGA-DA-A3F8-06 11 2424761 2424761 G T TSSC4 Nonsense_Mutation p.E300* 0.11 TCGA-DA-A3F8-06 11 27016752 27016752 C T FIBIN 3'UTR 0.41 TCGA-DA-A3F8-06 11 294812 294812 C T ATHL1 3'UTR 0.15 TCGA-DA-A3F8-06 11 30352784 30352784 G A ARL14EP Missense_Mutation p.D97N 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-DA-A3F8-06 11 399129 399129 G A PKP3 Silent p.E402E 0.07 TCGA-DA-A3F8-06 11 40137701 40137701 G A LRRC4C Missense_Mutation p.P48S 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 11 4389043 4389043 G A OR52B4 Silent p.I161I 0.23 TCGA-DA-A3F8-06 11 45204596 45204596 C T PRDM11 Silent p.I136I 0.16 TCGA-DA-A3F8-06 11 4661698 4661698 C T OR51D1 Silent p.F226F 0.17 TCGA-DA-A3F8-06 11 46726695 46726695 C T ZNF408 Missense_Mutation p.S482F 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 11 46765767 46765767 G A CKAP5 Missense_Mutation p.P1969S 0.25 tolerated(0.08) benign(0.106) TCGA-DA-A3F8-06 11 4790821 4790821 G A OR51F1 Silent p.F109F 0.15 TCGA-DA-A3F8-06 11 48267003 48267003 G A OR4X2 Silent p.V116V 0.16 TCGA-DA-A3F8-06 11 4843021 4843021 C T OR51F2 Missense_Mutation p.R136C 0.19 deleterious(0.02) possibly_damaging(0.855) TCGA-DA-A3F8-06 11 5009503 5009503 C T MMP26 Missense_Mutation p.P21L 0.12 deleterious(0.02) benign(0.301) TCGA-DA-A3F8-06 11 5153029 5153029 G A OR52A5 Missense_Mutation p.L282F 0.20 tolerated(0.17) benign(0.139) TCGA-DA-A3F8-06 11 5253961 5253961 C T HBD 3'Flank 0.25 TCGA-DA-A3F8-06 11 5270642 5270642 C T HBG1 Missense_Mutation p.E91K 0.12 tolerated(0.21) possibly_damaging(0.822) TCGA-DA-A3F8-06 11 5275566 5275566 C T HBG2 Missense_Mutation p.E91K 0.07 tolerated(0.21) possibly_damaging(0.822) TCGA-DA-A3F8-06 11 5322369 5322369 G A OR51B4 Missense_Mutation p.P270S 0.08 deleterious(0.02) benign(0.103) TCGA-DA-A3F8-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.14 tolerated(0.65) benign(0.008) TCGA-DA-A3F8-06 11 5364072 5364072 G A OR51B5 Missense_Mutation p.S228F 0.13 deleterious(0.01) possibly_damaging(0.611) TCGA-DA-A3F8-06 11 55135500 55135500 G A OR4A15 Silent p.Q47Q 0.23 TCGA-DA-A3F8-06 11 55595228 55595228 C T OR5L2 Silent p.F178F 0.17 TCGA-DA-A3F8-06 11 5566169 5566169 G A OR52H1 Silent p.L195L 0.17 TCGA-DA-A3F8-06 11 5566262 5566262 G A OR52H1 Silent p.I164I 0.09 TCGA-DA-A3F8-06 11 5566399 5566399 C T OR52H1 Missense_Mutation p.D119N 0.15 deleterious(0) possibly_damaging(0.881) TCGA-DA-A3F8-06 11 55681515 55681515 G A OR5W2 Missense_Mutation p.P182S 0.15 deleterious(0.02) benign(0.274) TCGA-DA-A3F8-06 11 55872796 55872796 C T OR8H2 Missense_Mutation p.S93F 0.11 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 11 55873194 55873194 C T OR8H2 Silent p.L226L 0.15 TCGA-DA-A3F8-06 11 56237223 56237223 C T OR5M3 Missense_Mutation p.G251S 0.09 deleterious(0.03) possibly_damaging(0.71) TCGA-DA-A3F8-06 11 56409485 56409485 C T OR5AP2 Missense_Mutation p.G144E 0.15 tolerated(0.66) benign(0.003) TCGA-DA-A3F8-06 11 56468489 56468489 C T OR9G1 Missense_Mutation p.P209L 0.10 deleterious(0.02) benign(0.285) TCGA-DA-A3F8-06 11 56510337 56510337 C T OR9G4 Silent p.R317R 0.12 TCGA-DA-A3F8-06 11 56510965 56510965 G A OR9G4 Missense_Mutation p.S108F 0.17 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 11 5776340 5776340 C T OR52N4 Missense_Mutation p.R124C 0.19 deleterious(0.01) benign(0.082) TCGA-DA-A3F8-06 11 57799099 57799099 C T OR6Q1 Silent p.I225I 0.23 TCGA-DA-A3F8-06 11 57971194 57971194 C G OR1S2 Missense_Mutation p.G154R 0.13 deleterious(0) possibly_damaging(0.739) TCGA-DA-A3F8-06 11 57983187 57983187 C T OR1S1 Missense_Mutation p.S324F 0.12 deleterious(0.04) benign(0.352) TCGA-DA-A3F8-06 11 58035226 58035226 G A OR10W1 Silent p.L35L 0.16 TCGA-DA-A3F8-06 11 5862783 5862783 G A OR52E6 Silent p.I115I 0.11 TCGA-DA-A3F8-06 11 5877977 5877977 G A OR52E8 3'UTR 0.25 TCGA-DA-A3F8-06 11 6024114 6024114 G A OR56A4 Missense_Mutation p.L89F 0.17 deleterious(0.04) benign(0.169) TCGA-DA-A3F8-06 11 60482845 60482845 C T MS4A8 Silent p.T237T 0.10 TCGA-DA-A3F8-06 11 60635114 60635114 G A ZP1 Nonsense_Mutation p.W27* 0.14 TCGA-DA-A3F8-06 11 61504698 61504698 C T DAGLA Silent p.S472S 0.15 TCGA-DA-A3F8-06 11 61547737 61547739 GAG - MYRF In_Frame_Del p.E795del 0.10 TCGA-DA-A3F8-06 11 6261005 6261005 G A CNGA4 Missense_Mutation p.V86M 0.11 deleterious(0.01) benign(0.058) TCGA-DA-A3F8-06 11 6261526 6261526 C T CNGA4 Missense_Mutation p.R168C 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 11 62650391 62650391 A C SLC3A2 Missense_Mutation p.I306L 0.17 deleterious(0.03) benign(0.068) TCGA-DA-A3F8-06 11 62911041 62911041 C T SLC22A24 Missense_Mutation p.D71N 0.13 tolerated(0.06) benign(0.071) TCGA-DA-A3F8-06 11 62951237 62951237 C T SLC22A25 Missense_Mutation p.G295S 0.17 tolerated(0.11) possibly_damaging(0.732) TCGA-DA-A3F8-06 11 63231068 63231068 C T HRASLS5 Splice_Site p.X250_splice 0.13 TCGA-DA-A3F8-06 11 63884924 63884924 G A FLRT1 Silent p.T395T 0.15 TCGA-DA-A3F8-06 11 63996739 63996739 C T NUDT22 Silent p.T200T 0.17 TCGA-DA-A3F8-06 11 65479844 65479844 C T KAT5 Missense_Mutation p.P36S 0.30 tolerated(0.93) benign(0.005) TCGA-DA-A3F8-06 11 65812975 65812975 G A GAL3ST3 5'UTR 0.28 TCGA-DA-A3F8-06 11 66000511 66000511 C T PACS1 Silent p.S604S 0.17 TCGA-DA-A3F8-06 11 66031185 66031185 C T KLC2 Silent p.I269I 0.15 TCGA-DA-A3F8-06 11 66192534 66192534 G A NPAS4 Missense_Mutation p.E725K 0.10 tolerated_low_confidence(0.39) benign(0.108) TCGA-DA-A3F8-06 11 66359062 66359062 G A CCDC87 Silent p.P475P 0.13 TCGA-DA-A3F8-06 11 67076895 67076895 G A SSH3 Silent p.R363R 0.15 TCGA-DA-A3F8-06 11 67076896 67076896 G A SSH3 Missense_Mutation p.E364K 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 11 6790141 6790141 C T OR2AG2 Silent p.G16G 0.18 TCGA-DA-A3F8-06 11 67933324 67933324 G A SUV420H1 Intron 0.23 TCGA-DA-A3F8-06 11 6897881 6897881 G A OR10A4 Translation_Start_Site p.M1? 0.22 deleterious(0.02) benign(0.021) TCGA-DA-A3F8-06 11 73688040 73688040 G A UCP2 Silent p.L120L 0.25 TCGA-DA-A3F8-06 11 75298635 75298635 C T MAP6 Silent p.K637K 0.16 TCGA-DA-A3F8-06 11 75501281 75501281 G T DGAT2 Missense_Mutation p.W100L 0.14 deleterious(0) probably_damaging(0.942) TCGA-DA-A3F8-06 11 76912662 76912662 C T MYO7A Silent p.T1674T 0.23 TCGA-DA-A3F8-06 11 76980007 76980007 G A GDPD4 Missense_Mutation p.P196S 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-DA-A3F8-06 11 78443363 78443363 G A TENM4 Nonsense_Mutation p.Q1046* 0.12 TCGA-DA-A3F8-06 11 82880097 82880097 C T PCF11 Missense_Mutation p.P907L 0.10 deleterious(0.04) benign(0.367) TCGA-DA-A3F8-06 11 8933051 8933051 C T AKIP1 Nonsense_Mutation p.Q19* 0.24 TCGA-DA-A3F8-06 11 92534138 92534138 C T FAT3 Silent p.I2653I 0.28 TCGA-DA-A3F8-06 11 93127673 93127673 G A CCDC67 Missense_Mutation p.E364K 0.36 tolerated(0.12) benign(0.44) TCGA-DA-A3F8-06 11 93127724 93127724 G A CCDC67 Missense_Mutation p.E381K 0.16 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 11 93837869 93837869 G A HEPHL1 Missense_Mutation p.R953Q 0.15 tolerated(0.23) benign(0.009) TCGA-DA-A3F8-06 12 1005395 1005395 C T WNK1 Silent p.I1914I 0.16 TCGA-DA-A3F8-06 12 100904661 100904661 C T NR1H4 Missense_Mutation p.S72F 0.14 deleterious(0) benign(0.395) TCGA-DA-A3F8-06 12 101584379 101584379 G A SLC5A8 Missense_Mutation p.P234S 0.12 deleterious(0.04) possibly_damaging(0.898) TCGA-DA-A3F8-06 12 101603315 101603315 G A SLC5A8 Silent p.L104L 0.17 TCGA-DA-A3F8-06 12 101703550 101703550 C T UTP20 Missense_Mutation p.R722C 0.14 deleterious(0) probably_damaging(0.97) TCGA-DA-A3F8-06 12 101777419 101777419 G A UTP20 Silent p.R2676R 0.16 TCGA-DA-A3F8-06 12 102811603 102811603 C T IGF1 Missense_Mutation p.G194E 0.19 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DA-A3F8-06 12 10562066 10562066 C T KLRC4 Missense_Mutation p.E37K 0.13 deleterious(0.02) benign(0.096) TCGA-DA-A3F8-06 12 10774549 10774549 G A STYK1 Silent p.V330V 0.18 TCGA-DA-A3F8-06 12 109328001 109328001 C T SVOP Missense_Mutation p.E275K 0.22 tolerated(0.07) probably_damaging(0.995) TCGA-DA-A3F8-06 12 10978119 10978119 A G TAS2R10 Silent p.F250F 0.18 TCGA-DA-A3F8-06 12 111311643 111311643 C T CCDC63 Intron 0.08 TCGA-DA-A3F8-06 12 111772375 111772375 C T CUX2 Silent p.S1019S 0.23 TCGA-DA-A3F8-06 12 113306230 113306230 C T RPH3A Intron 0.09 TCGA-DA-A3F8-06 12 113307579 113307579 G A RPH3A Missense_Mutation p.R209K 0.17 tolerated(0.61) benign(0) TCGA-DA-A3F8-06 12 113405379 113405379 T G OAS3 Missense_Mutation p.V949G 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 12 113553474 113553474 C T RASAL1 Silent p.L323L 0.23 TCGA-DA-A3F8-06 12 11461723 11461723 C T PRB4 Missense_Mutation p.G65E 0.16 deleterious_low_confidence(0) unknown(0) TCGA-DA-A3F8-06 12 117158139 117158139 A T C12orf49 Missense_Mutation p.Y128N 0.22 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 12 117680496 117680496 G A NOS1 Missense_Mutation p.H1027Y 0.11 deleterious(0.01) benign(0.39) TCGA-DA-A3F8-06 12 117922329 117922329 C T KSR2 Missense_Mutation p.G781E 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-DA-A3F8-06 12 120608117 120608117 G A GCN1L1 Silent p.L459L 0.10 TCGA-DA-A3F8-06 12 122217332 122217332 G A TMEM120B 3'UTR 0.31 TCGA-DA-A3F8-06 12 124274641 124274641 G A DNAH10 Silent p.V535V 0.21 TCGA-DA-A3F8-06 12 124399056 124399056 C T DNAH10 Silent p.F3393F 0.18 TCGA-DA-A3F8-06 12 124824854 124824854 G A NCOR2 Missense_Mutation p.P1825L 0.27 probably_damaging(0.999) TCGA-DA-A3F8-06 12 125558421 125558421 G A AACS Splice_Site p.X45_splice 0.22 TCGA-DA-A3F8-06 12 126128661 126128661 G A TMEM132B Missense_Mutation p.E488K 0.14 deleterious(0) possibly_damaging(0.886) TCGA-DA-A3F8-06 12 126138866 126138866 G A TMEM132B Silent p.G949G 0.18 TCGA-DA-A3F8-06 12 126139082 126139082 G A TMEM132B Silent p.R1021R 0.17 TCGA-DA-A3F8-06 12 128899597 128899597 C T TMEM132C Silent p.L136L 0.38 TCGA-DA-A3F8-06 12 1289817 1289817 A G ERC1 Missense_Mutation p.T617A 0.20 tolerated(0.06) possibly_damaging(0.823) TCGA-DA-A3F8-06 12 129559536 129559536 C T TMEM132D Silent p.G728G 0.23 TCGA-DA-A3F8-06 12 13715621 13715621 G A GRIN2B 3'UTR 0.16 TCGA-DA-A3F8-06 12 14813983 14813983 C T GUCY2C Silent p.L432L 0.17 TCGA-DA-A3F8-06 12 18435579 18435579 G A PIK3C2G Silent p.P188P 0.19 TCGA-DA-A3F8-06 12 18435666 18435666 G A PIK3C2G Nonsense_Mutation p.W217* 0.18 TCGA-DA-A3F8-06 12 18691178 18691178 G A PIK3C2G Missense_Mutation p.E1097K 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 12 21643307 21643307 G A RECQL Missense_Mutation p.P74S 0.14 tolerated(0.24) benign(0.011) TCGA-DA-A3F8-06 12 22086769 22086769 G A ABCC9 Silent p.F77F 0.12 TCGA-DA-A3F8-06 12 250230 250230 G A IQSEC3 Intron 0.16 TCGA-DA-A3F8-06 12 2614051 2614051 T C CACNA1C Missense_Mutation p.V386A 0.16 deleterious(0) probably_damaging(0.98) TCGA-DA-A3F8-06 12 26647141 26647142 - A ITPR2 Frame_Shift_Ins p.S1772Ffs*12 0.10 TCGA-DA-A3F8-06 12 2690858 2690858 C T CACNA1C Silent p.S666S 0.16 TCGA-DA-A3F8-06 12 27521277 27521277 G A ARNTL2 Missense_Mutation p.M38I 0.11 tolerated(0.49) benign(0) TCGA-DA-A3F8-06 12 33030833 33030833 C T PKP2 Silent p.G327G 0.13 TCGA-DA-A3F8-06 12 33559843 33559843 C T SYT10 Missense_Mutation p.D320N 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 12 33579246 33579246 C T SYT10 Silent p.E112E 0.14 TCGA-DA-A3F8-06 12 33579405 33579405 G A SYT10 Silent p.V59V 0.16 TCGA-DA-A3F8-06 12 33592482 33592482 C T SYT10 5'UTR 0.22 TCGA-DA-A3F8-06 12 44125510 44125510 G A PUS7L Nonsense_Mutation p.Q593* 0.31 TCGA-DA-A3F8-06 12 47472017 47472017 C T AMIGO2 Missense_Mutation p.D257N 0.19 deleterious(0.01) benign(0.306) TCGA-DA-A3F8-06 12 47628795 47628795 C T PCED1B 5'UTR 0.15 TCGA-DA-A3F8-06 12 49169833 49169833 C T ADCY6 Silent p.R573R 0.14 TCGA-DA-A3F8-06 12 49169834 49169834 C T ADCY6 Missense_Mutation p.R573Q 0.15 tolerated(0.08) probably_damaging(0.943) TCGA-DA-A3F8-06 12 50284881 50284881 T C FAIM2 Missense_Mutation p.T151A 0.13 deleterious(0.02) probably_damaging(0.968) TCGA-DA-A3F8-06 12 50358795 50358795 C T AQP5 Silent p.I211I 0.10 TCGA-DA-A3F8-06 12 51497944 51497944 G A TFCP2 Silent p.V320V 0.09 TCGA-DA-A3F8-06 12 5154998 5154998 C T KCNA5 Missense_Mutation p.S562F 0.14 deleterious(0) probably_damaging(0.997) TCGA-DA-A3F8-06 12 51773463 51773463 C T GALNT6 Missense_Mutation p.E35K 0.17 tolerated_low_confidence(0.21) benign(0.002) TCGA-DA-A3F8-06 12 52788966 52788966 G A KRT82 Silent p.S445S 0.20 TCGA-DA-A3F8-06 12 52886591 52886591 G A KRT6A Missense_Mutation p.P128S 0.10 deleterious(0.04) unknown(0) TCGA-DA-A3F8-06 12 52886592 52886592 G A KRT6A Silent p.F127F 0.10 TCGA-DA-A3F8-06 12 53001913 53001913 C T KRT73 3'UTR 0.26 TCGA-DA-A3F8-06 12 53169378 53169378 G A KRT76 Silent p.F203F 0.19 TCGA-DA-A3F8-06 12 53217744 53217744 G A KRT79 Missense_Mutation p.T358I 0.28 deleterious(0.02) benign(0.349) TCGA-DA-A3F8-06 12 53594030 53594030 T C ITGB7 Silent p.Q66Q 0.11 TCGA-DA-A3F8-06 12 54115879 54115879 C T CALCOCO1 Missense_Mutation p.R180Q 0.20 tolerated(0.12) benign(0.013) TCGA-DA-A3F8-06 12 54338879 54338879 G A HOXC13 Missense_Mutation p.E278K 0.19 deleterious(0) possibly_damaging(0.484) TCGA-DA-A3F8-06 12 54963026 54963026 G A PDE1B Missense_Mutation p.E96K 0.18 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F8-06 12 55524480 55524480 C T OR9K2 Missense_Mutation p.P310S 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-DA-A3F8-06 12 56480404 56480404 G A ERBB3 Missense_Mutation p.D171N 0.15 tolerated(0.87) benign(0.017) TCGA-DA-A3F8-06 12 57883328 57883328 C T MARS Missense_Mutation p.P134L 0.17 tolerated(0.27) benign(0.147) TCGA-DA-A3F8-06 12 57987836 57987836 C T PIP4K2C Missense_Mutation p.P68L 0.21 deleterious(0) probably_damaging(0.966) TCGA-DA-A3F8-06 12 62929322 62929322 C T MON2 Missense_Mutation p.T578I 0.19 deleterious(0) possibly_damaging(0.891) TCGA-DA-A3F8-06 12 62979270 62979270 C T MON2 Silent p.C1632C 0.16 TCGA-DA-A3F8-06 12 6437012 6437012 G A PLEKHG6 Missense_Mutation p.E755K 0.14 deleterious_low_confidence(0.03) benign(0) TCGA-DA-A3F8-06 12 64521469 64521469 C T SRGAP1 Silent p.S835S 0.11 TCGA-DA-A3F8-06 12 70070743 70070743 G A BEST3 Missense_Mutation p.P274S 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 12 72680484 72680484 C T TRHDE Missense_Mutation p.S268L 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-DA-A3F8-06 12 80732864 80732864 G A OTOGL Missense_Mutation p.D1615N 0.08 tolerated(1) benign(0.035) TCGA-DA-A3F8-06 12 86373294 86373294 C T MGAT4C Missense_Mutation p.D404N 0.13 tolerated(0.13) probably_damaging(0.95) TCGA-DA-A3F8-06 12 91502721 91502721 C T LUM Silent p.L12L 0.19 TCGA-DA-A3F8-06 12 96388721 96388721 C T HAL Missense_Mutation p.G100R 0.27 tolerated_low_confidence(0.54) benign(0.052) TCGA-DA-A3F8-06 12 97057618 97057618 G A C12orf55 Missense_Mutation p.R1824Q 0.15 deleterious(0.01) possibly_damaging(0.873) TCGA-DA-A3F8-06 13 101997760 101997760 C T NALCN Nonsense_Mutation p.W219* 0.19 TCGA-DA-A3F8-06 13 102344974 102344974 G A ITGBL1 Missense_Mutation p.G352E 0.18 deleterious(0.04) benign(0.323) TCGA-DA-A3F8-06 13 107145727 107145727 G A EFNB2 Silent p.L221L 0.17 TCGA-DA-A3F8-06 13 113826188 113826188 G A PROZ Silent p.G346G 0.19 TCGA-DA-A3F8-06 13 114498175 114498175 G A TMEM255B Missense_Mutation p.A103T 0.14 deleterious(0) probably_damaging(0.977) TCGA-DA-A3F8-06 13 19751395 19751395 C T TUBA3C Missense_Mutation p.R243Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-DA-A3F8-06 13 25275005 25275005 C T ATP12A Missense_Mutation p.P615L 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 13 25861414 25861414 C G MTMR6 5'UTR 0.18 TCGA-DA-A3F8-06 13 28895678 28895678 C T FLT1 Silent p.E1032E 0.09 TCGA-DA-A3F8-06 13 29608172 29608172 C T MTUS2 Silent p.L796L 0.26 TCGA-DA-A3F8-06 13 29608252 29608252 C T MTUS2 Silent p.S822S 0.38 TCGA-DA-A3F8-06 13 32915326 32915326 C T BRCA2 Silent p.I2278I 0.18 TCGA-DA-A3F8-06 13 33681071 33681071 C T STARD13 Silent p.R1016R 0.13 TCGA-DA-A3F8-06 13 33700320 33700320 G A STARD13 Silent p.V660V 0.18 TCGA-DA-A3F8-06 13 38137465 38137465 G A POSTN 3'UTR 0.09 TCGA-DA-A3F8-06 13 38153409 38153409 T C POSTN Missense_Mutation p.N583S 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-DA-A3F8-06 13 43180672 43180672 G A TNFSF11 Missense_Mutation p.R191Q 0.21 deleterious(0.03) benign(0.084) TCGA-DA-A3F8-06 13 49951177 49951177 G A CAB39L Nonsense_Mutation p.Q68* 0.15 TCGA-DA-A3F8-06 13 52549278 52549278 G A ATP7B Silent p.T26T 0.16 TCGA-DA-A3F8-06 13 52646152 52646152 C T NEK5 Missense_Mutation p.E618K 0.17 tolerated(0.37) benign(0.015) TCGA-DA-A3F8-06 13 53422092 53422092 C T PCDH8 Silent p.V160V 0.19 TCGA-DA-A3F8-06 13 58299045 58299045 C T PCDH17 Missense_Mutation p.P1033S 0.12 tolerated_low_confidence(0.23) benign(0.041) TCGA-DA-A3F8-06 13 61987205 61987205 G A PCDH20 Nonsense_Mutation p.Q343* 0.15 TCGA-DA-A3F8-06 13 76410544 76410544 C T LMO7 Silent p.S882S 0.36 TCGA-DA-A3F8-06 13 77575078 77575078 A G CLN5 Missense_Mutation p.R400G 0.11 tolerated_low_confidence(0.34) possibly_damaging(0.466) TCGA-DA-A3F8-06 13 77807327 77807327 G A MYCBP2 Missense_Mutation p.P863S 0.19 possibly_damaging(0.641) TCGA-DA-A3F8-06 13 78492579 78492579 C T EDNRB Missense_Mutation p.E134K 0.16 deleterious(0.01) benign(0.311) TCGA-DA-A3F8-06 13 86369299 86369299 C T SLITRK6 Missense_Mutation p.E449K 0.33 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 13 99520598 99520598 G A DOCK9 Missense_Mutation p.H993Y 0.24 tolerated(0.25) benign(0.026) TCGA-DA-A3F8-06 14 100118902 100118902 G A HHIPL1 Missense_Mutation p.M199I 0.32 deleterious(0.01) possibly_damaging(0.731) TCGA-DA-A3F8-06 14 105208283 105208283 G A ADSSL1 Missense_Mutation p.V341M 0.25 deleterious(0.03) probably_damaging(0.909) TCGA-DA-A3F8-06 14 106237046 106237046 G A IGHG3 Silent p.T102T 0.15 TCGA-DA-A3F8-06 14 106573536 106573536 A C IGHV3-11 Silent p.G16G 0.17 TCGA-DA-A3F8-06 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.17 deleterious(0) possibly_damaging(0.796) TCGA-DA-A3F8-06 14 20389398 20389398 C T OR4K5 Silent p.F211F 0.18 TCGA-DA-A3F8-06 14 20483196 20483196 G A OR4K14 Missense_Mutation p.P53S 0.16 tolerated(0.88) benign(0.004) TCGA-DA-A3F8-06 14 20692342 20692342 C T OR11H6 Silent p.F158F 0.14 TCGA-DA-A3F8-06 14 21794020 21794020 G A RPGRIP1 Missense_Mutation p.E800K 0.18 deleterious(0.02) possibly_damaging(0.896) TCGA-DA-A3F8-06 14 22134093 22134093 C T OR4E2 Missense_Mutation p.S266F 0.20 tolerated(0.06) probably_damaging(0.934) TCGA-DA-A3F8-06 14 22458988 22458988 C T TRAV16 Missense_Mutation p.S47F 0.27 deleterious(0.03) probably_damaging(0.937) TCGA-DA-A3F8-06 14 22573859 22573859 G A TRAV24 Missense_Mutation p.E27K 0.24 tolerated(0.08) possibly_damaging(0.734) TCGA-DA-A3F8-06 14 22591996 22591996 G A TRAV26-1 Missense_Mutation p.M27I 0.20 tolerated(0.18) benign(0.02) TCGA-DA-A3F8-06 14 22631274 22631274 G A TRAV29DV5 Silent p.L10L 0.26 TCGA-DA-A3F8-06 14 23531415 23531415 G A ACIN1 Missense_Mutation p.P1079S 0.18 probably_damaging(0.989) TCGA-DA-A3F8-06 14 23874032 23874032 C T MYH6 Splice_Site p.X177_splice 0.23 TCGA-DA-A3F8-06 14 24109021 24109021 G A DHRS2 Missense_Mutation p.G113S 0.14 tolerated(0.09) benign(0.232) TCGA-DA-A3F8-06 14 24730925 24730925 G A TGM1 Missense_Mutation p.R162C 0.17 tolerated(0.09) possibly_damaging(0.627) TCGA-DA-A3F8-06 14 24912033 24912033 G A SDR39U1 5'Flank 0.15 TCGA-DA-A3F8-06 14 25044523 25044523 C T CTSG Missense_Mutation p.G51R 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 14 31535349 31535349 C T AP4S1 5'UTR 0.23 TCGA-DA-A3F8-06 14 31549843 31549843 C T AP4S1 Missense_Mutation p.P120L 0.07 tolerated(0.11) benign(0.012) TCGA-DA-A3F8-06 14 32562058 32562058 C T ARHGAP5 Missense_Mutation p.P728L 0.20 tolerated(0.71) benign(0.028) TCGA-DA-A3F8-06 14 35871823 35871823 T C NFKBIA Missense_Mutation p.Q228R 0.22 tolerated(0.11) probably_damaging(1) TCGA-DA-A3F8-06 14 38724651 38724651 G A CLEC14A Missense_Mutation p.R193C 0.21 deleterious(0.02) possibly_damaging(0.862) TCGA-DA-A3F8-06 14 39716206 39716206 C T MIA2 Missense_Mutation p.P143L 0.11 tolerated(0.1) benign(0.045) TCGA-DA-A3F8-06 14 44976126 44976126 G A FSCB Missense_Mutation p.S22L 0.24 deleterious(0.01) possibly_damaging(0.699) TCGA-DA-A3F8-06 14 47120418 47120418 C T RPL10L Silent p.T174T 0.18 TCGA-DA-A3F8-06 14 52433367 52433367 C T GNG2 Missense_Mutation p.P60S 0.19 deleterious(0) probably_damaging(0.984) TCGA-DA-A3F8-06 14 52735319 52735319 C T PTGDR Missense_Mutation p.H263Y 0.20 deleterious(0) probably_damaging(0.978) TCGA-DA-A3F8-06 14 57938121 57938121 G A C14orf105 Silent p.T281T 0.22 TCGA-DA-A3F8-06 14 58060680 58060680 C T SLC35F4 Missense_Mutation p.R125K 0.06 tolerated(0.46) benign(0.05) TCGA-DA-A3F8-06 14 58832826 58832826 C T ARID4A Missense_Mutation p.P1134L 0.21 deleterious(0) benign(0.068) TCGA-DA-A3F8-06 14 58937421 58937421 C T KIAA0586 Missense_Mutation p.P898S 0.19 deleterious(0.04) benign(0.221) TCGA-DA-A3F8-06 14 62463026 62463026 G A SYT16 Missense_Mutation p.D97N 0.15 tolerated_low_confidence(0.06) benign(0.007) TCGA-DA-A3F8-06 14 63468140 63468140 T C KCNH5 Missense_Mutation p.I114M 0.11 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 14 63511943 63511943 G A KCNH5 5'UTR 0.20 TCGA-DA-A3F8-06 14 65208940 65208940 C T PLEKHG3 Missense_Mutation p.P846L 0.15 deleterious(0.03) probably_damaging(0.979) TCGA-DA-A3F8-06 14 65240022 65240022 C T SPTB Silent p.E1698E 0.19 TCGA-DA-A3F8-06 14 65262322 65262322 G A SPTB Silent p.A459A 0.16 TCGA-DA-A3F8-06 14 66082996 66082996 C T FUT8 Silent p.F129F 0.25 TCGA-DA-A3F8-06 14 69521190 69521190 G A DCAF5 Missense_Mutation p.P738L 0.13 tolerated_low_confidence(0.82) benign(0) TCGA-DA-A3F8-06 14 69795192 69795192 G A GALNT16 Silent p.G198G 0.16 TCGA-DA-A3F8-06 14 70263654 70263654 G A SLC10A1 Silent p.P73P 0.18 TCGA-DA-A3F8-06 14 70712832 70712832 C T ADAM21P1 RNA 0.05 TCGA-DA-A3F8-06 14 70713546 70713546 C T ADAM21P1 RNA 0.14 TCGA-DA-A3F8-06 14 70924332 70924332 C T ADAM21 Missense_Mutation p.S39F 0.17 tolerated(0.12) benign(0.012) TCGA-DA-A3F8-06 14 70925762 70925762 G A ADAM21 Missense_Mutation p.E516K 0.11 tolerated(0.32) benign(0.006) TCGA-DA-A3F8-06 14 72202026 72202026 G A SIPA1L1 Missense_Mutation p.E1702K 0.13 tolerated(0.62) benign(0.109) TCGA-DA-A3F8-06 14 73989524 73989524 G A HEATR4 Silent p.A111A 0.18 TCGA-DA-A3F8-06 14 73989833 73989833 C T HEATR4 Silent p.K8K 0.25 TCGA-DA-A3F8-06 14 74360528 74360528 C T ZNF410 Missense_Mutation p.S21F 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A3F8-06 14 75276419 75276419 C T YLPM1 Missense_Mutation p.P1620S 0.25 probably_damaging(0.937) TCGA-DA-A3F8-06 14 77272972 77272972 T C ANGEL1 Silent p.A389A 0.20 TCGA-DA-A3F8-06 14 86088433 86088433 T A FLRT2 Missense_Mutation p.I192N 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 14 88707124 88707124 C T KCNK10 Missense_Mutation p.G148E 0.15 deleterious(0.04) probably_damaging(0.986) TCGA-DA-A3F8-06 14 88938715 88938715 G A PTPN21 Missense_Mutation p.T915I 0.11 tolerated(0.28) benign(0.002) TCGA-DA-A3F8-06 14 88938716 88938716 T A PTPN21 Missense_Mutation p.T915S 0.11 deleterious(0.01) benign(0.064) TCGA-DA-A3F8-06 14 88970769 88970769 C T PTPN21 Missense_Mutation p.R196K 0.22 tolerated(0.12) probably_damaging(0.996) TCGA-DA-A3F8-06 14 91639693 91639693 C T C14orf159 Missense_Mutation p.P173S 0.29 deleterious(0.02) possibly_damaging(0.603) TCGA-DA-A3F8-06 14 92349320 92349320 C T FBLN5 Silent p.L280L 0.09 TCGA-DA-A3F8-06 14 96157189 96157189 G A TCL1B Silent p.G93G 0.19 TCGA-DA-A3F8-06 14 99641066 99641066 G A BCL11B Missense_Mutation p.P703S 0.18 tolerated(0.66) benign(0.009) TCGA-DA-A3F8-06 14 99697821 99697821 G T BCL11B Silent p.I167I 0.20 TCGA-DA-A3F8-06 15 21071256 21071256 C T POTEB2 Missense_Mutation p.D119N 0.15 tolerated(0.07) possibly_damaging(0.827) TCGA-DA-A3F8-06 15 22368968 22368968 C T OR4M2 Silent p.H131H 0.06 TCGA-DA-A3F8-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.25 tolerated(0.26) probably_damaging(0.991) TCGA-DA-A3F8-06 15 24923805 24923805 C T NPAP1 Missense_Mutation p.P931S 0.13 tolerated(0.18) probably_damaging(0.934) TCGA-DA-A3F8-06 15 24924404 24924404 G A NPAP1 Silent p.E1130E 0.19 TCGA-DA-A3F8-06 15 25436428 25436428 C G SNORD115-11 3'Flank 0.13 TCGA-DA-A3F8-06 15 25438495 25438495 C T SNORD115-11 3'Flank 0.15 TCGA-DA-A3F8-06 15 25440086 25440086 T C SNORD115-14 RNA 0.20 TCGA-DA-A3F8-06 15 25456842 25456842 G A SNORD115-22 3'Flank 0.22 TCGA-DA-A3F8-06 15 28259931 28259931 G A OCA2 Silent p.I345I 0.18 TCGA-DA-A3F8-06 15 33858887 33858887 C T RYR3 Silent p.L385L 0.27 TCGA-DA-A3F8-06 15 33895503 33895503 G A RYR3 Missense_Mutation p.G701E 0.19 probably_damaging(1) TCGA-DA-A3F8-06 15 35148979 35148979 G A AQR 3'UTR 0.05 TCGA-DA-A3F8-06 15 37184528 37184528 G A MEIS2 Missense_Mutation p.S427L 0.16 tolerated_low_confidence(0.08) benign(0.002) TCGA-DA-A3F8-06 15 42041469 42041469 C T MGA Silent p.S1888S 0.21 TCGA-DA-A3F8-06 15 43363110 43363110 G A UBR1 Missense_Mutation p.P181L 0.22 tolerated(0.3) benign(0.009) TCGA-DA-A3F8-06 15 43527773 43527773 G A TGM5 Silent p.F536F 0.17 TCGA-DA-A3F8-06 15 43891502 43891502 C T CKMT1B 3'UTR 0.12 TCGA-DA-A3F8-06 15 45436415 45436415 C T DUOX1 Silent p.I706I 0.12 TCGA-DA-A3F8-06 15 49775435 49775435 G A FGF7 Missense_Mutation p.G125E 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 15 50497527 50497527 T G SLC27A2 Silent p.G313G 0.14 TCGA-DA-A3F8-06 15 50534519 50534519 G A HDC Missense_Mutation p.P643S 0.17 tolerated_low_confidence(0.11) benign(0.035) TCGA-DA-A3F8-06 15 55916539 55916539 C T PRTG Splice_Site p.X1031_splice 0.17 TCGA-DA-A3F8-06 15 57910263 57910263 G A MYZAP Silent p.R65R 0.16 TCGA-DA-A3F8-06 15 59964837 59964837 T C BNIP2 Missense_Mutation p.K313E 0.18 tolerated(0.14) possibly_damaging(0.832) TCGA-DA-A3F8-06 15 60720806 60720806 A G NARG2 Missense_Mutation p.V881A 0.19 tolerated(0.47) benign(0.015) TCGA-DA-A3F8-06 15 62256091 62256091 C T VPS13C Missense_Mutation p.A1092T 0.25 deleterious(0.01) possibly_damaging(0.715) TCGA-DA-A3F8-06 15 63102156 63102156 G A TLN2 Silent p.E2232E 0.11 TCGA-DA-A3F8-06 15 63102157 63102157 G A TLN2 Missense_Mutation p.V2233M 0.11 deleterious(0.05) benign(0.007) TCGA-DA-A3F8-06 15 65623873 65623873 C T IGDCC3 Missense_Mutation p.G425R 0.17 tolerated(0.09) probably_damaging(0.952) TCGA-DA-A3F8-06 15 65772707 65772707 C T DPP8 Silent p.Q399Q 0.14 TCGA-DA-A3F8-06 15 68617562 68617562 C T ITGA11 Silent p.V743V 0.20 TCGA-DA-A3F8-06 15 69561363 69561363 T C GLCE Missense_Mutation p.L545P 0.18 deleterious(0) probably_damaging(0.997) TCGA-DA-A3F8-06 15 77406437 77406437 G A PEAK1 3'UTR 0.19 TCGA-DA-A3F8-06 15 78390807 78390807 G A SH2D7 Missense_Mutation p.A172T 0.17 tolerated(0.57) benign(0) TCGA-DA-A3F8-06 15 79382667 79382667 C T RASGRF1 Silent p.S58S 0.17 TCGA-DA-A3F8-06 15 79382829 79382829 C T RASGRF1 Silent p.G4G 0.15 TCGA-DA-A3F8-06 15 81601176 81601176 C T IL16 3'Flank 0.19 TCGA-DA-A3F8-06 15 82450160 82450160 G A EFTUD1 Nonsense_Mutation p.Q642* 0.20 TCGA-DA-A3F8-06 15 82450161 82450161 G A EFTUD1 Silent p.N641N 0.19 TCGA-DA-A3F8-06 15 85147260 85147260 C T ZSCAN2 Silent p.I34I 0.14 TCGA-DA-A3F8-06 15 86124839 86124839 C G AKAP13 Missense_Mutation p.D1180E 0.20 deleterious_low_confidence(0.04) benign(0.28) TCGA-DA-A3F8-06 15 88420258 88420258 C T NTRK3 Missense_Mutation p.E810K 0.21 deleterious(0) probably_damaging(0.973) TCGA-DA-A3F8-06 15 89424760 89424760 C T HAPLN3 Silent p.L107L 0.15 TCGA-DA-A3F8-06 15 90799107 90799107 C T TTLL13 Missense_Mutation p.L180F 0.14 tolerated(0.23) possibly_damaging(0.723) TCGA-DA-A3F8-06 15 91769536 91769536 C T SV2B Missense_Mutation p.P15S 0.27 tolerated_low_confidence(0.29) benign(0.004) TCGA-DA-A3F8-06 15 93557990 93557990 C T CHD2 Missense_Mutation p.S1586F 0.19 deleterious(0.01) probably_damaging(0.915) TCGA-DA-A3F8-06 15 99672051 99672051 G A SYNM Silent p.A1161A 0.26 TCGA-DA-A3F8-06 15 99768777 99768777 G A TTC23 Silent p.L47L 0.31 TCGA-DA-A3F8-06 16 10031959 10031959 C T GRIN2A Silent p.L288L 0.12 TCGA-DA-A3F8-06 16 1248754 1248754 C T CACNA1H Silent p.F261F 0.33 TCGA-DA-A3F8-06 16 1261718 1261718 C T CACNA1H Silent p.A1493A 0.11 TCGA-DA-A3F8-06 16 16138472 16138472 C T ABCC1 Silent p.F325F 0.15 TCGA-DA-A3F8-06 16 1616260 1616260 G A IFT140 Silent p.F601F 0.22 TCGA-DA-A3F8-06 16 19451450 19451450 G A TMC5 Silent p.L30L 0.20 TCGA-DA-A3F8-06 16 20430801 20430801 C T ACSM5 Intron 0.19 TCGA-DA-A3F8-06 16 20482880 20482880 G A ACSM2A Missense_Mutation p.D255N 0.22 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F8-06 16 20651861 20651861 G A ACSM1 Silent p.V346V 0.18 TCGA-DA-A3F8-06 16 20990798 20990798 G A DNAH3 Nonsense_Mutation p.R2644* 0.16 TCGA-DA-A3F8-06 16 21014449 21014449 C T DNAH3 Missense_Mutation p.E2035K 0.13 tolerated(0.56) benign(0.004) TCGA-DA-A3F8-06 16 21014453 21014453 C T DNAH3 Silent p.E2033E 0.18 TCGA-DA-A3F8-06 16 21261887 21261887 G A ANKS4B Missense_Mutation p.D334N 0.25 tolerated(0.28) benign(0.003) TCGA-DA-A3F8-06 16 22826334 22826334 C T HS3ST2 Nonsense_Mutation p.R135* 0.22 TCGA-DA-A3F8-06 16 23080856 23080856 G A USP31 Missense_Mutation p.A857V 0.24 tolerated(0.23) benign(0.062) TCGA-DA-A3F8-06 16 2367371 2367371 C T ABCA3 Missense_Mutation p.D342N 0.17 tolerated(0.06) possibly_damaging(0.458) TCGA-DA-A3F8-06 16 2367652 2367652 G A ABCA3 Silent p.V329V 0.14 TCGA-DA-A3F8-06 16 23721867 23721867 G A ERN2 Missense_Mutation p.P116L 0.20 deleterious(0.01) benign(0.117) TCGA-DA-A3F8-06 16 25235772 25235772 G T AQP8 Silent p.V159V 0.10 TCGA-DA-A3F8-06 16 28603669 28603669 C T SULT1A2 Silent p.K230K 0.20 TCGA-DA-A3F8-06 16 28883292 28883292 G A SH2B1 Missense_Mutation p.E501K 0.23 tolerated(0.24) benign(0.276) TCGA-DA-A3F8-06 16 29908156 29908156 C T SEZ6L2 Silent p.T166T 0.23 TCGA-DA-A3F8-06 16 29997607 29997607 C T TAOK2 Nonsense_Mutation p.Q672* 0.13 TCGA-DA-A3F8-06 16 3254267 3254267 G A OR1F1 Silent p.S7S 0.09 TCGA-DA-A3F8-06 16 3254364 3254364 C T OR1F1 Silent p.L40L 0.09 TCGA-DA-A3F8-06 16 32893872 32893872 G A RP11-989E6.3 5'Flank 0.12 TCGA-DA-A3F8-06 16 396885 396885 C T AXIN1 Silent p.G47G 0.16 TCGA-DA-A3F8-06 16 4847480 4847480 C T ROGDI Nonsense_Mutation p.W282* 0.19 TCGA-DA-A3F8-06 16 4949351 4949351 G A PPL Missense_Mutation p.S214L 0.11 deleterious(0.02) benign(0.02) TCGA-DA-A3F8-06 16 51175194 51175194 C T SALL1 Silent p.V313V 0.19 TCGA-DA-A3F8-06 16 64981857 64981857 G A CDH11 Silent p.T680T 0.24 TCGA-DA-A3F8-06 16 68395565 68395565 C T SMPD3 Missense_Mutation p.G603S 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 16 70367567 70367567 T C DDX19B 3'UTR 0.30 TCGA-DA-A3F8-06 16 71163659 71163659 C T HYDIN Missense_Mutation p.D371N 0.11 probably_damaging(0.981) TCGA-DA-A3F8-06 16 71570920 71570920 G A CHST4 Missense_Mutation p.E114K 0.17 tolerated(1) benign(0.002) TCGA-DA-A3F8-06 16 716717 716717 G A WDR90 Nonsense_Mutation p.W1643* 0.15 TCGA-DA-A3F8-06 16 72108278 72108278 G A HPR Missense_Mutation p.G63R 0.31 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 16 72137629 72137629 C T DHX38 Missense_Mutation p.A589V 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 16 72205110 72205110 C T PMFBP1 5'UTR 0.27 TCGA-DA-A3F8-06 16 81411177 81411177 C T GAN Silent p.F590F 0.20 TCGA-DA-A3F8-06 16 9858184 9858184 C T GRIN2A Missense_Mutation p.E1073K 0.16 deleterious_low_confidence(0.04) benign(0.338) TCGA-DA-A3F8-06 17 10243522 10243522 C T MYH13 Silent p.R667R 0.18 TCGA-DA-A3F8-06 17 10307884 10307884 G A MYH8 Silent p.I817I 0.15 TCGA-DA-A3F8-06 17 10359019 10359019 G A MYH4 Nonsense_Mutation p.Q696* 0.11 TCGA-DA-A3F8-06 17 10363552 10363552 C T MYH4 Missense_Mutation p.E412K 0.16 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 17 10435088 10435088 C T MYH2 Silent p.K853K 0.19 TCGA-DA-A3F8-06 17 10535036 10535036 G A MYH3 Silent p.H1726H 0.18 TCGA-DA-A3F8-06 17 10543080 10543080 G A MYH3 Nonsense_Mutation p.Q908* 0.28 TCGA-DA-A3F8-06 17 11672468 11672468 C T DNAH9 Silent p.I2458I 0.16 TCGA-DA-A3F8-06 17 11687793 11687793 C T DNAH9 Silent p.F2666F 0.20 TCGA-DA-A3F8-06 17 11774915 11774915 G A DNAH9 Missense_Mutation p.V3352I 0.20 possibly_damaging(0.776) TCGA-DA-A3F8-06 17 12860056 12860056 C T ARHGAP44 Silent p.F445F 0.11 TCGA-DA-A3F8-06 17 18286823 18286823 G A EVPLL Silent p.L266L 0.27 TCGA-DA-A3F8-06 17 21318825 21318825 C T KCNJ12 Silent p.F57F 0.06 TCGA-DA-A3F8-06 17 2585106 2585106 C T PAFAH1B1 3'UTR 0.18 TCGA-DA-A3F8-06 17 26084380 26084380 C A NOS2 Splice_Site p.X1119_splice 0.16 TCGA-DA-A3F8-06 17 26881986 26881986 C T PIGS Silent p.R425R 0.15 TCGA-DA-A3F8-06 17 26943780 26943780 G A KIAA0100 Intron 0.21 TCGA-DA-A3F8-06 17 27383341 27383341 C T PIPOX 3'UTR 0.10 TCGA-DA-A3F8-06 17 28544283 28544283 C T SLC6A4 Silent p.Q246Q 0.17 TCGA-DA-A3F8-06 17 29284925 29284925 G A ADAP2 3'UTR 0.16 TCGA-DA-A3F8-06 17 29557326 29557326 G A NF1 Silent p.T1013T 0.24 TCGA-DA-A3F8-06 17 3119138 3119138 C T OR1A1 Missense_Mutation p.S75L 0.14 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 17 3144278 3144278 C T OR1D4 RNA 0.12 TCGA-DA-A3F8-06 17 3182254 3182254 C T OR3A2 5'UTR 0.14 TCGA-DA-A3F8-06 17 33504139 33504139 C T UNC45B Missense_Mutation p.P712L 0.19 deleterious(0) possibly_damaging(0.901) TCGA-DA-A3F8-06 17 33747315 33747315 T C SLFN12 Silent p.Q375Q 0.18 TCGA-DA-A3F8-06 17 34072975 34072975 G T GAS2L2 Missense_Mutation p.T514K 0.16 deleterious(0) possibly_damaging(0.663) TCGA-DA-A3F8-06 17 37224029 37224029 C T PLXDC1 3'UTR 0.27 TCGA-DA-A3F8-06 17 38133112 38133112 G A GSDMA Missense_Mutation p.G380D 0.17 tolerated(0.09) benign(0.202) TCGA-DA-A3F8-06 17 38910144 38910144 C T KRT25 Missense_Mutation p.E213K 0.16 deleterious(0) probably_damaging(0.982) TCGA-DA-A3F8-06 17 38977341 38977341 T C KRT10 Missense_Mutation p.N219S 0.17 tolerated(0.42) possibly_damaging(0.487) TCGA-DA-A3F8-06 17 39084802 39084802 C T KRT23 Missense_Mutation p.G232S 0.18 deleterious(0.01) benign(0.08) TCGA-DA-A3F8-06 17 39595490 39595490 C T KRT38 Missense_Mutation p.E233K 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 17 41001332 41001332 C A AOC2 Silent p.P606P 0.18 TCGA-DA-A3F8-06 17 41246734 41246734 C T BRCA1 Missense_Mutation p.E272K 0.16 tolerated(0.11) possibly_damaging(0.891) TCGA-DA-A3F8-06 17 4428422 4428422 G A SPNS2 Silent p.V169V 0.21 TCGA-DA-A3F8-06 17 46627846 46627846 C T HOXB3 Silent p.G382G 0.16 TCGA-DA-A3F8-06 17 47489156 47489156 A C PHB Missense_Mutation p.V45G 0.12 deleterious(0) probably_damaging(0.933) TCGA-DA-A3F8-06 17 48244987 48244987 G A SGCA Missense_Mutation p.G68R 0.19 deleterious(0) possibly_damaging(0.706) TCGA-DA-A3F8-06 17 48625796 48625796 C T SPATA20 Missense_Mutation p.A93V 0.09 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F8-06 17 48917212 48917212 C T WFIKKN2 Missense_Mutation p.P188L 0.25 tolerated(0.14) benign(0.05) TCGA-DA-A3F8-06 17 5073951 5073951 G A USP6 Missense_Mutation p.G1232E 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.53) TCGA-DA-A3F8-06 17 54526461 54526461 G A ANKFN1 Missense_Mutation p.R377K 0.22 tolerated(0.33) benign(0.071) TCGA-DA-A3F8-06 17 5456732 5456732 G A NLRP1 Silent p.R834R 0.24 TCGA-DA-A3F8-06 17 57058075 57058075 G A PPM1E Missense_Mutation p.G651R 0.16 tolerated_low_confidence(0.29) benign(0.02) TCGA-DA-A3F8-06 17 57287390 57287390 G A SMG8 5'UTR 0.09 TCGA-DA-A3F8-06 17 61949951 61949951 G A CSH2 Nonsense_Mutation p.Q148* 0.15 TCGA-DA-A3F8-06 17 62130146 62130146 C T ERN1 Silent p.E749E 0.13 TCGA-DA-A3F8-06 17 62499389 62499389 T C DDX5 Missense_Mutation p.T243A 0.19 deleterious(0) possibly_damaging(0.829) TCGA-DA-A3F8-06 17 62750150 62750150 G A hsa-mir-6080 RNA 0.19 TCGA-DA-A3F8-06 17 64222231 64222231 G A APOH Missense_Mutation p.P85S 0.21 tolerated(0.08) probably_damaging(0.991) TCGA-DA-A3F8-06 17 64876678 64876678 G A CACNG5 Missense_Mutation p.M96I 0.19 tolerated(0.49) benign(0.232) TCGA-DA-A3F8-06 17 65040921 65040921 G A CACNG1 Missense_Mutation p.A49T 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A3F8-06 17 65185812 65185812 G A HELZ Missense_Mutation p.L253F 0.17 deleterious(0.03) possibly_damaging(0.596) TCGA-DA-A3F8-06 17 6594132 6594132 G A SLC13A5 Missense_Mutation p.T468I 0.19 deleterious(0.03) benign(0.424) TCGA-DA-A3F8-06 17 67178857 67178857 G A ABCA10 Missense_Mutation p.P864S 0.25 tolerated(0.32) benign(0.223) TCGA-DA-A3F8-06 17 694832 694832 G A RNMTL1 Silent p.R262R 0.15 TCGA-DA-A3F8-06 17 6980104 6980104 C T CLEC10A Silent p.T100T 0.18 TCGA-DA-A3F8-06 17 7217805 7217805 A G GPS2 Splice_Site p.X68_splice 0.06 TCGA-DA-A3F8-06 17 72539102 72539102 G A CD300C Missense_Mutation p.P142L 0.10 tolerated(0.32) benign(0.015) TCGA-DA-A3F8-06 17 72541035 72541035 G A CD300C Missense_Mutation p.S38F 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 17 72584938 72584938 C T CD300LD Missense_Mutation p.E31K 0.13 tolerated(0.09) possibly_damaging(0.521) TCGA-DA-A3F8-06 17 72584939 72584939 C T CD300LD Silent p.S30S 0.13 TCGA-DA-A3F8-06 17 72588657 72588657 G A C17orf77 Missense_Mutation p.G158R 0.17 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DA-A3F8-06 17 72954806 72954806 G A HID1 Missense_Mutation p.P401L 0.14 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 17 7318297 7318297 C T NLGN2 Silent p.A289A 0.14 TCGA-DA-A3F8-06 17 73942784 73942784 A C ACOX1 3'UTR 0.17 TCGA-DA-A3F8-06 17 73949623 73949623 G A ACOX1 Missense_Mutation p.L285F 0.22 deleterious(0.04) benign(0.173) TCGA-DA-A3F8-06 17 73998612 73998612 C G CDK3 Silent p.R169R 0.17 TCGA-DA-A3F8-06 17 74071156 74071156 C T GALR2 Silent p.I64I 0.12 TCGA-DA-A3F8-06 17 74944083 74944083 G A MGAT5B Missense_Mutation p.A708T 0.17 tolerated(0.07) benign(0.015) TCGA-DA-A3F8-06 17 76525587 76525587 C T DNAH17 Silent p.E1158E 0.21 TCGA-DA-A3F8-06 17 7722319 7722319 G A DNAH2 Missense_Mutation p.E3585K 0.32 possibly_damaging(0.576) TCGA-DA-A3F8-06 17 7724654 7724654 G A DNAH2 Missense_Mutation p.M3703I 0.16 benign(0.005) TCGA-DA-A3F8-06 17 7752204 7752204 C T KDM6B Silent p.S866S 0.16 TCGA-DA-A3F8-06 17 78321567 78321567 C T RNF213 Silent p.P3144P 0.20 TCGA-DA-A3F8-06 17 7910813 7910813 C T GUCY2D Silent p.T511T 0.12 TCGA-DA-A3F8-06 17 79418857 79418857 C T RP11-1055B8.7 Silent p.I1380I 0.26 TCGA-DA-A3F8-06 17 79650906 79650906 C T ARL16 5'UTR 0.21 TCGA-DA-A3F8-06 17 80559180 80559180 C T FOXK2 Silent p.A596A 0.16 TCGA-DA-A3F8-06 17 80559181 80559181 G T FOXK2 Missense_Mutation p.A597S 0.16 tolerated(0.17) benign(0.081) TCGA-DA-A3F8-06 17 8064826 8064826 C A VAMP2 Missense_Mutation p.G100V 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-DA-A3F8-06 17 81006361 81006361 G A B3GNTL1 Missense_Mutation p.P88L 0.09 tolerated(0.18) benign(0.008) TCGA-DA-A3F8-06 17 8108642 8108642 A C AURKB Missense_Mutation p.N251K 0.17 deleterious(0) benign(0.403) TCGA-DA-A3F8-06 17 8215940 8215940 C T ARHGEF15 Nonsense_Mutation p.Q195* 0.13 TCGA-DA-A3F8-06 17 8272852 8272852 G A KRBA2 Missense_Mutation p.S360F 0.17 deleterious(0.04) benign(0.02) TCGA-DA-A3F8-06 17 8452049 8452049 G A MYH10 Missense_Mutation p.P326S 0.11 benign(0.423) TCGA-DA-A3F8-06 17 8658914 8658914 C T SPDYE4 Missense_Mutation p.A137T 0.19 deleterious(0.01) benign(0.277) TCGA-DA-A3F8-06 17 9590140 9590140 G A USP43 Missense_Mutation p.E423K 0.15 deleterious(0.02) possibly_damaging(0.901) TCGA-DA-A3F8-06 17 9631945 9631945 C T USP43 Missense_Mutation p.R1004W 0.13 tolerated(0.43) benign(0.001) TCGA-DA-A3F8-06 18 22057305 22057305 C T HRH4 Missense_Mutation p.P318S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 18 28581686 28581686 T C DSC3 Silent p.V711V 0.20 TCGA-DA-A3F8-06 18 28598661 28598661 C T DSC3 Missense_Mutation p.D350N 0.06 deleterious(0) possibly_damaging(0.619) TCGA-DA-A3F8-06 18 28710546 28710546 C T DSC1 Silent p.E872E 0.17 TCGA-DA-A3F8-06 18 28720199 28720199 G A DSC1 Silent p.F442F 0.17 TCGA-DA-A3F8-06 18 28918418 28918418 G A DSG1 Splice_Site p.X469_splice 0.16 TCGA-DA-A3F8-06 18 28926106 28926106 G A DSG1 Missense_Mutation p.R682K 0.13 tolerated(0.57) benign(0.359) TCGA-DA-A3F8-06 18 28965102 28965102 G A DSG4 Missense_Mutation p.V18M 0.21 tolerated(0.06) benign(0.269) TCGA-DA-A3F8-06 18 28979385 28979385 C T DSG4 Missense_Mutation p.H386Y 0.25 tolerated(0.48) benign(0.43) TCGA-DA-A3F8-06 18 30093406 30093406 C T WBP11P1 RNA 0.15 TCGA-DA-A3F8-06 18 31322974 31322974 C T ASXL3 Silent p.L1054L 0.11 TCGA-DA-A3F8-06 18 31325478 31325478 T C ASXL3 Missense_Mutation p.V1889A 0.20 benign(0) TCGA-DA-A3F8-06 18 44561226 44561226 G A TCEB3B Missense_Mutation p.P137L 0.14 tolerated(0.06) benign(0.129) TCGA-DA-A3F8-06 18 46237999 46237999 C T CTIF Missense_Mutation p.P173S 0.14 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-DA-A3F8-06 18 47432958 47432958 G A MYO5B Nonsense_Mutation p.R749* 0.25 TCGA-DA-A3F8-06 18 48248376 48248376 G A MAPK4 Missense_Mutation p.D254N 0.23 tolerated(0.33) benign(0.161) TCGA-DA-A3F8-06 18 57103370 57103370 G A CCBE1 Missense_Mutation p.P331S 0.20 deleterious(0.01) benign(0.209) TCGA-DA-A3F8-06 18 59157987 59157987 C T CDH20 Silent p.F67F 0.21 TCGA-DA-A3F8-06 18 59483147 59483147 C T RNF152 Missense_Mutation p.G184S 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-DA-A3F8-06 18 61305285 61305285 C T SERPINB4 Missense_Mutation p.D281N 0.13 tolerated(0.54) benign(0.043) TCGA-DA-A3F8-06 18 61460488 61460488 G A SERPINB7 Missense_Mutation p.E105K 0.19 tolerated(0.18) probably_damaging(0.997) TCGA-DA-A3F8-06 18 66504344 66504344 G A CCDC102B Missense_Mutation p.S115N 0.15 deleterious(0.04) probably_damaging(0.933) TCGA-DA-A3F8-06 18 76754495 76754495 C T SALL3 Missense_Mutation p.S835L 0.17 tolerated(0.35) benign(0.425) TCGA-DA-A3F8-06 18 77895182 77895182 G A ADNP2 Missense_Mutation p.G629E 0.20 deleterious(0) possibly_damaging(0.888) TCGA-DA-A3F8-06 18 9886878 9886878 C T TXNDC2 Silent p.L134L 0.13 TCGA-DA-A3F8-06 19 10089286 10089286 C T COL5A3 Silent p.K994K 0.08 TCGA-DA-A3F8-06 19 11169017 11169017 C T SMARCA4 Missense_Mutation p.P1504L 0.13 probably_damaging(0.996) TCGA-DA-A3F8-06 19 11224014 11224014 G A LDLR Missense_Mutation p.R416Q 0.21 deleterious(0.01) possibly_damaging(0.735) TCGA-DA-A3F8-06 19 1123971 1123971 G A SBNO2 Silent p.S164S 0.39 TCGA-DA-A3F8-06 19 13397441 13397441 G A CACNA1A Silent p.S1143S 0.19 TCGA-DA-A3F8-06 19 13993560 13993560 G A C19orf57 3'UTR 0.16 TCGA-DA-A3F8-06 19 14705449 14705449 G A CLEC17A Missense_Mutation p.E106K 0.17 tolerated(1) benign(0) TCGA-DA-A3F8-06 19 14705470 14705470 C T CLEC17A Missense_Mutation p.P113S 0.20 tolerated(0.14) benign(0.06) TCGA-DA-A3F8-06 19 14765819 14765819 G A EMR3 Silent p.V184V 0.15 TCGA-DA-A3F8-06 19 14826998 14826998 G A ZNF333 Silent p.R225R 0.19 TCGA-DA-A3F8-06 19 15052838 15052838 G A OR7C2 Missense_Mutation p.D180N 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DA-A3F8-06 19 15072869 15072869 C T SLC1A6 Missense_Mutation p.D294N 0.19 tolerated(0.29) possibly_damaging(0.707) TCGA-DA-A3F8-06 19 15166261 15166261 G A CASP14 Missense_Mutation p.D181N 0.12 tolerated(0.12) possibly_damaging(0.791) TCGA-DA-A3F8-06 19 15740024 15740024 C T CYP4F8 RNA 0.17 TCGA-DA-A3F8-06 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.19 TCGA-DA-A3F8-06 19 15918164 15918164 C T OR10H1 Silent p.K228K 0.08 TCGA-DA-A3F8-06 19 16024612 16024612 G A CYP4F11 Missense_Mutation p.P502L 0.22 deleterious(0.03) benign(0.25) TCGA-DA-A3F8-06 19 16040396 16040396 C T CYP4F11 Missense_Mutation p.E72K 0.20 tolerated(0.11) benign(0.046) TCGA-DA-A3F8-06 19 16918508 16918508 C T NWD1 Missense_Mutation p.P1283L 0.19 deleterious(0.02) probably_damaging(1) TCGA-DA-A3F8-06 19 16965144 16965144 T G SIN3B Intron 0.21 TCGA-DA-A3F8-06 19 17328281 17328281 C T USE1 Intron 0.33 TCGA-DA-A3F8-06 19 17837489 17837489 C T MAP1S Silent p.F432F 0.23 TCGA-DA-A3F8-06 19 18377400 18377400 G A KIAA1683 Missense_Mutation p.P317L 0.10 tolerated(0.08) benign(0.057) TCGA-DA-A3F8-06 19 19654548 19654548 G A CILP2 Silent p.E398E 0.21 TCGA-DA-A3F8-06 19 19655067 19655067 C T CILP2 Silent p.P571P 0.11 TCGA-DA-A3F8-06 19 20117876 20117876 G A ZNF682 Silent p.F145F 0.21 TCGA-DA-A3F8-06 19 20727979 20727979 C T ZNF737 Missense_Mutation p.E344K 0.20 tolerated(0.12) benign(0.019) TCGA-DA-A3F8-06 19 21366594 21366594 C T ZNF431 Silent p.S496S 0.19 TCGA-DA-A3F8-06 19 21605873 21605873 G A ZNF493 Missense_Mutation p.G138S 0.16 tolerated(0.24) possibly_damaging(0.737) TCGA-DA-A3F8-06 19 22271732 22271732 C T ZNF257 Missense_Mutation p.H394Y 0.29 deleterious(0.01) possibly_damaging(0.577) TCGA-DA-A3F8-06 19 2234021 2234021 G T PLEKHJ1 Missense_Mutation p.N120K 0.15 tolerated(0.18) benign(0.051) TCGA-DA-A3F8-06 19 23837302 23837302 G A ZNF675 Nonsense_Mutation p.Q145* 0.23 TCGA-DA-A3F8-06 19 24102881 24102881 C T ZNF726 Missense_Mutation p.P75S 0.17 tolerated(0.08) benign(0.208) TCGA-DA-A3F8-06 19 2431606 2431606 C T LMNB2 Silent p.E587E 0.16 TCGA-DA-A3F8-06 19 2717260 2717260 G A DIRAS1 Missense_Mutation p.S182F 0.15 tolerated(0.07) benign(0.121) TCGA-DA-A3F8-06 19 31039473 31039473 G A ZNF536 Missense_Mutation p.D983N 0.15 deleterious(0.01) possibly_damaging(0.505) TCGA-DA-A3F8-06 19 32847604 32847604 C T ZNF507 Missense_Mutation p.S737F 0.21 deleterious(0.03) benign(0.064) TCGA-DA-A3F8-06 19 33098694 33098694 G T ANKRD27 Silent p.T740T 0.19 TCGA-DA-A3F8-06 19 35757365 35757365 G A LSR Missense_Mutation p.M342I 0.16 tolerated(0.18) benign(0.005) TCGA-DA-A3F8-06 19 35804396 35804396 G A MAG 3'UTR 0.16 TCGA-DA-A3F8-06 19 36317308 36317308 C T NPHS1 3'UTR 0.14 TCGA-DA-A3F8-06 19 36587934 36587934 C T WDR62 Missense_Mutation p.R825C 0.17 tolerated(0.08) possibly_damaging(0.84) TCGA-DA-A3F8-06 19 37405908 37405908 C T ZNF829 Missense_Mutation p.E100K 0.19 tolerated(0.15) benign(0.001) TCGA-DA-A3F8-06 19 37880080 37880080 C T ZNF527 Nonsense_Mutation p.Q377* 0.13 TCGA-DA-A3F8-06 19 38860892 38860892 C T CATSPERG Silent p.I1069I 0.13 TCGA-DA-A3F8-06 19 38949939 38949939 G A RYR1 Missense_Mutation p.G774E 0.14 probably_damaging(0.996) TCGA-DA-A3F8-06 19 38954406 38954406 G A RYR1 Missense_Mutation p.R901K 0.19 benign(0.086) TCGA-DA-A3F8-06 19 38980751 38980751 G A RYR1 Silent p.E1950E 0.16 TCGA-DA-A3F8-06 19 38997005 38997005 C T RYR1 Silent p.S2868S 0.13 TCGA-DA-A3F8-06 19 38997006 38997006 C T RYR1 Missense_Mutation p.R2869W 0.12 possibly_damaging(0.797) TCGA-DA-A3F8-06 19 3907802 3907802 G A ATCAY Silent p.T143T 0.14 TCGA-DA-A3F8-06 19 39292389 39292389 G A LGALS4 3'UTR 0.14 TCGA-DA-A3F8-06 19 39306638 39306638 G A ECH1 Silent p.F247F 0.13 TCGA-DA-A3F8-06 19 39962101 39962101 C T SUPT5H Silent p.I594I 0.22 TCGA-DA-A3F8-06 19 40151153 40151153 G A LGALS16 Missense_Mutation p.R141Q 0.42 tolerated_low_confidence(0.37) benign(0.006) TCGA-DA-A3F8-06 19 40316606 40316606 G A DYRK1B Nonsense_Mutation p.R547* 0.20 TCGA-DA-A3F8-06 19 40363221 40363221 C T FCGBP Missense_Mutation p.R4950Q 0.15 possibly_damaging(0.49) TCGA-DA-A3F8-06 19 40376764 40376764 C T FCGBP Silent p.L3886L 0.13 TCGA-DA-A3F8-06 19 40589045 40589045 C T ZNF780A Missense_Mutation p.E37K 0.12 deleterious(0.01) possibly_damaging(0.817) TCGA-DA-A3F8-06 19 40719928 40719928 C T MAP3K10 Missense_Mutation p.P781L 0.21 tolerated(0.32) benign(0.001) TCGA-DA-A3F8-06 19 40719929 40719929 C T MAP3K10 Silent p.P781P 0.21 TCGA-DA-A3F8-06 19 41622176 41622176 G A CYP2F1 Missense_Mutation p.G28E 0.11 tolerated(0.07) benign(0.009) TCGA-DA-A3F8-06 19 42794832 42794832 G A CIC Missense_Mutation p.E638K 0.17 benign(0.424) TCGA-DA-A3F8-06 19 42848175 42848175 T G MEGF8 Missense_Mutation p.C580G 0.15 deleterious(0.01) benign(0.303) TCGA-DA-A3F8-06 19 43244515 43244515 G A PSG3 Missense_Mutation p.P8S 0.16 tolerated(0.2) benign(0.028) TCGA-DA-A3F8-06 19 43343528 43343528 G A PSG10P 3'Flank 0.22 TCGA-DA-A3F8-06 19 43411865 43411865 G A PSG6 Missense_Mutation p.P283L 0.18 tolerated(0.11) possibly_damaging(0.523) TCGA-DA-A3F8-06 19 434845 434845 G A SHC2 Missense_Mutation p.S325L 0.22 tolerated(0.12) benign(0.005) TCGA-DA-A3F8-06 19 43762487 43762487 C T PSG9 Silent p.G370G 0.12 TCGA-DA-A3F8-06 19 43864489 43864489 C T CD177 3'UTR 0.36 TCGA-DA-A3F8-06 19 44127496 44127496 C T CADM4 Missense_Mutation p.E385K 0.18 deleterious(0) possibly_damaging(0.492) TCGA-DA-A3F8-06 19 44223004 44223004 C T IRGC Silent p.P98P 0.21 TCGA-DA-A3F8-06 19 45028187 45028187 C T CEACAM20 RNA 0.20 TCGA-DA-A3F8-06 19 45593548 45593548 G A GEMIN7 Missense_Mutation p.R59Q 0.25 deleterious(0.04) benign(0.153) TCGA-DA-A3F8-06 19 47278996 47278996 G A SLC1A5 Missense_Mutation p.S466F 0.07 tolerated(0.63) benign(0.021) TCGA-DA-A3F8-06 19 47285791 47285791 C T SLC1A5 Missense_Mutation p.E225K 0.17 tolerated(0.14) benign(0.385) TCGA-DA-A3F8-06 19 47844800 47844800 C T C5AR2 Silent p.P248P 0.20 TCGA-DA-A3F8-06 19 47969382 47969382 G A SLC8A2 Silent p.F93F 0.17 TCGA-DA-A3F8-06 19 49183689 49183689 C T RN7SL345P 5'Flank 0.15 TCGA-DA-A3F8-06 19 49657579 49657579 C T HRC Missense_Mutation p.D306N 0.18 deleterious(0.01) possibly_damaging(0.903) TCGA-DA-A3F8-06 19 49841189 49841189 G A CD37 Missense_Mutation p.R117Q 0.20 tolerated(0.33) possibly_damaging(0.564) TCGA-DA-A3F8-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.23 TCGA-DA-A3F8-06 19 50760612 50760612 G A MYH14 Missense_Mutation p.G701S 0.17 tolerated(0.88) benign(0.004) TCGA-DA-A3F8-06 19 50826886 50826886 G A KCNC3 Missense_Mutation p.R442C 0.20 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F8-06 19 50978600 50978600 C T FAM71E1 Missense_Mutation p.G158E 0.24 tolerated(0.15) probably_damaging(0.956) TCGA-DA-A3F8-06 19 51021747 51021747 G A LRRC4B Missense_Mutation p.S408F 0.18 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F8-06 19 51503514 51503514 C T KLK8 Silent p.P122P 0.22 TCGA-DA-A3F8-06 19 51506247 51506247 G A KLK9 3'UTR 0.21 TCGA-DA-A3F8-06 19 51738480 51738480 G A CD33 Missense_Mutation p.A272T 0.25 tolerated(0.45) benign(0.033) TCGA-DA-A3F8-06 19 52001304 52001304 G A SIGLEC12 Missense_Mutation p.S458F 0.16 deleterious(0.02) benign(0.409) TCGA-DA-A3F8-06 19 52004611 52004611 C T SIGLEC12 Missense_Mutation p.G126E 0.12 deleterious(0) probably_damaging(0.986) TCGA-DA-A3F8-06 19 52034741 52034741 C T SIGLEC6 Missense_Mutation p.E34K 0.18 tolerated(0.27) benign(0.042) TCGA-DA-A3F8-06 19 52271984 52271984 C T FPR2 Silent p.L25L 0.15 TCGA-DA-A3F8-06 19 52520153 52520153 C T ZNF614 Missense_Mutation p.G233E 0.25 deleterious(0.01) benign(0.212) TCGA-DA-A3F8-06 19 52521264 52521264 G A ZNF614 Missense_Mutation p.P79S 0.14 tolerated(0.4) benign(0.008) TCGA-DA-A3F8-06 19 52793753 52793753 C T ZNF766 Missense_Mutation p.R237C 0.37 deleterious(0) benign(0.333) TCGA-DA-A3F8-06 19 53432116 53432116 C T ZNF321P 3'UTR 0.15 TCGA-DA-A3F8-06 19 535890 535890 C T CDC34 Silent p.F77F 0.15 TCGA-DA-A3F8-06 19 54081049 54081049 G T ZNF331 Missense_Mutation p.G412V 0.14 deleterious(0.05) possibly_damaging(0.486) TCGA-DA-A3F8-06 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.09 tolerated(0.26) probably_damaging(0.999) TCGA-DA-A3F8-06 19 55107696 55107696 C T LILRA1 Missense_Mutation p.P334L 0.17 tolerated(0.07) possibly_damaging(0.521) TCGA-DA-A3F8-06 19 55147908 55147908 G A AC009892.10 Intron 0.21 TCGA-DA-A3F8-06 19 55255363 55255363 G A KIR2DL3 Missense_Mutation p.G164E 0.13 tolerated(0.25) probably_damaging(1) TCGA-DA-A3F8-06 19 55331325 55331325 C T KIR3DL1 Silent p.I171I 0.16 TCGA-DA-A3F8-06 19 55417910 55417910 G A NCR1 Missense_Mutation p.E34K 0.22 tolerated(0.61) benign(0.008) TCGA-DA-A3F8-06 19 55494101 55494101 G A NLRP2 Silent p.R345R 0.16 TCGA-DA-A3F8-06 19 55594836 55594836 C T EPS8L1 Silent p.A435A 0.17 TCGA-DA-A3F8-06 19 56482009 56482009 C T NLRP8 Silent p.S827S 0.13 TCGA-DA-A3F8-06 19 56482034 56482034 C T NLRP8 Silent p.L836L 0.12 TCGA-DA-A3F8-06 19 57325035 57325035 C T PEG3 3'UTR 0.11 TCGA-DA-A3F8-06 19 57334199 57334199 G A PEG3 Missense_Mutation p.R163W 0.15 deleterious(0) benign(0.332) TCGA-DA-A3F8-06 19 57640376 57640376 G A USP29 Missense_Mutation p.M111I 0.12 tolerated(0.48) benign(0.002) TCGA-DA-A3F8-06 19 57642615 57642615 G A USP29 Missense_Mutation p.D858N 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 19 57666650 57666650 G A DUXA Missense_Mutation p.P177S 0.17 tolerated_low_confidence(0.65) benign(0) TCGA-DA-A3F8-06 19 57868608 57868608 C T ZNF304 Silent p.G457G 0.22 TCGA-DA-A3F8-06 19 58005429 58005429 C T ZNF419 Nonsense_Mutation p.R503* 0.17 TCGA-DA-A3F8-06 19 58016682 58016682 C T ZNF773 Missense_Mutation p.S59F 0.11 tolerated(0.21) probably_damaging(0.996) TCGA-DA-A3F8-06 19 58102480 58102480 C T ZIK1 Missense_Mutation p.P434L 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 19 58146083 58146083 C T ZNF211 Silent p.F72F 0.21 TCGA-DA-A3F8-06 19 58452839 58452839 C T ZNF256 Missense_Mutation p.R446K 0.13 tolerated(0.32) benign(0.001) TCGA-DA-A3F8-06 19 58565236 58565236 G A ZSCAN1 Silent p.R348R 0.14 TCGA-DA-A3F8-06 19 58596472 58596472 C T ZSCAN18 Silent p.R427R 0.26 TCGA-DA-A3F8-06 19 58805901 58805901 C T ZNF8 Missense_Mutation p.P243S 0.10 tolerated(0.98) benign(0.004) TCGA-DA-A3F8-06 19 58805902 58805902 C T ZNF8 Missense_Mutation p.P243L 0.10 tolerated(0.52) benign(0.002) TCGA-DA-A3F8-06 19 58928611 58928611 T A ZNF584 Missense_Mutation p.F242L 0.11 tolerated(0.11) possibly_damaging(0.814) TCGA-DA-A3F8-06 19 58945164 58945164 C T ZNF132 Silent p.G549G 0.11 TCGA-DA-A3F8-06 19 58945792 58945792 A T ZNF132 Missense_Mutation p.I340N 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-DA-A3F8-06 19 6772975 6772975 C T VAV1 Missense_Mutation p.H53Y 0.16 tolerated(0.06) benign(0.266) TCGA-DA-A3F8-06 19 6921782 6921782 G A EMR1 Missense_Mutation p.G560E 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 19 7534917 7534917 T C ARHGEF18 Splice_Site p.X1117_splice 0.22 TCGA-DA-A3F8-06 19 7671229 7671229 C T CAMSAP3 Missense_Mutation p.P159S 0.14 tolerated(0.53) possibly_damaging(0.688) TCGA-DA-A3F8-06 19 7916578 7916578 C T EVI5L Silent p.I303I 0.15 TCGA-DA-A3F8-06 19 8130905 8130905 C T FBN3 Silent p.E2776E 0.19 TCGA-DA-A3F8-06 19 8539104 8539104 G A HNRNPM Missense_Mutation p.G366R 0.17 tolerated(0.06) possibly_damaging(0.467) TCGA-DA-A3F8-06 19 875447 875447 G A MED16 Missense_Mutation p.S523F 0.15 tolerated(0.66) possibly_damaging(0.788) TCGA-DA-A3F8-06 19 8995651 8995651 C T MUC16 Silent p.S13779S 0.16 TCGA-DA-A3F8-06 19 8999056 8999056 G A MUC16 Silent p.F13596F 0.19 TCGA-DA-A3F8-06 19 8999545 8999545 C T MUC16 Missense_Mutation p.A13544T 0.18 probably_damaging(0.997) TCGA-DA-A3F8-06 19 9059785 9059785 C T MUC16 Missense_Mutation p.E9221K 0.09 unknown(0) TCGA-DA-A3F8-06 19 9064403 9064403 C T MUC16 Silent p.V7681V 0.23 TCGA-DA-A3F8-06 19 9068247 9068247 C T MUC16 Missense_Mutation p.R6400K 0.18 unknown(0) TCGA-DA-A3F8-06 19 9075392 9075392 C T MUC16 Silent p.R4018R 0.16 TCGA-DA-A3F8-06 19 9077118 9077118 G A MUC16 Missense_Mutation p.S3443F 0.19 unknown(0) TCGA-DA-A3F8-06 19 9089119 9089119 G A MUC16 Missense_Mutation p.P899L 0.25 unknown(0) TCGA-DA-A3F8-06 19 9225965 9225965 G A OR7G1 Nonsense_Mutation p.Q159* 0.17 TCGA-DA-A3F8-06 19 9525116 9525116 C T ZNF266 Missense_Mutation p.G162E 0.22 deleterious(0.04) possibly_damaging(0.573) TCGA-DA-A3F8-06 19 9921728 9921728 G A FBXL12 Silent p.L275L 0.15 TCGA-DA-A3F8-06 1 100587028 100587028 G A SASS6 Missense_Mutation p.P130L 0.13 deleterious(0.02) possibly_damaging(0.864) TCGA-DA-A3F8-06 1 101196829 101196829 T C VCAM1 Missense_Mutation p.V427A 0.15 deleterious(0.04) benign(0.321) TCGA-DA-A3F8-06 1 101705685 101705685 C T S1PR1 Missense_Mutation p.S382F 0.15 deleterious(0) possibly_damaging(0.868) TCGA-DA-A3F8-06 1 103427792 103427792 C T COL11A1 Silent p.G1018G 0.11 TCGA-DA-A3F8-06 1 108247175 108247175 C T VAV3 Missense_Mutation p.G568S 0.17 tolerated(0.56) benign(0.001) TCGA-DA-A3F8-06 1 109268482 109268482 G A FNDC7 Missense_Mutation p.D323N 0.15 tolerated(0.09) possibly_damaging(0.833) TCGA-DA-A3F8-06 1 109707302 109707302 G A KIAA1324 Silent p.G152G 0.12 TCGA-DA-A3F8-06 1 110255822 110255822 G A GSTM5 Intron 0.09 TCGA-DA-A3F8-06 1 110255823 110255823 G A GSTM5 Intron 0.10 TCGA-DA-A3F8-06 1 111966312 111966312 G A OVGP1 Silent p.S112S 0.13 TCGA-DA-A3F8-06 1 112042717 112042717 G A ADORA3 Intron 0.15 TCGA-DA-A3F8-06 1 114437951 114437951 G A AP4B1 Silent p.F652F 0.11 TCGA-DA-A3F8-06 1 115828985 115828985 C T NGF Silent p.G144G 0.14 TCGA-DA-A3F8-06 1 116206470 116206470 C T VANGL1 Silent p.I131I 0.21 TCGA-DA-A3F8-06 1 119427525 119427525 G A TBX15 Missense_Mutation p.P441S 0.24 tolerated_low_confidence(0.22) benign(0.002) TCGA-DA-A3F8-06 1 119427740 119427740 G A TBX15 Missense_Mutation p.S369F 0.25 tolerated(0.06) probably_damaging(0.991) TCGA-DA-A3F8-06 1 12854125 12854125 C T PRAMEF1 Missense_Mutation p.P117S 0.12 tolerated(1) benign(0.001) TCGA-DA-A3F8-06 1 145438936 145438936 G A TXNIP Missense_Mutation p.R45K 0.17 tolerated(0.84) benign(0.004) TCGA-DA-A3F8-06 1 150443549 150443549 C T RPRD2 Nonsense_Mutation p.Q709* 0.15 TCGA-DA-A3F8-06 1 150445225 150445225 C T RPRD2 Silent p.F1267F 0.14 TCGA-DA-A3F8-06 1 152188442 152188442 C T HRNR Missense_Mutation p.G1888E 0.04 unknown(0) TCGA-DA-A3F8-06 1 152276826 152276826 C T FLG Silent p.Q3512Q 0.13 TCGA-DA-A3F8-06 1 152281004 152281004 C T FLG Missense_Mutation p.D2120N 0.13 possibly_damaging(0.539) TCGA-DA-A3F8-06 1 152285639 152285639 C T FLG Missense_Mutation p.E575K 0.14 benign(0.298) TCGA-DA-A3F8-06 1 154573527 154573527 G A ADAR Missense_Mutation p.H531Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F8-06 1 155658732 155658732 C T YY1AP1 5'Flank 0.32 TCGA-DA-A3F8-06 1 1558797 1558797 C T MIB2 Missense_Mutation p.P104S 0.12 deleterious_low_confidence(0) benign(0.004) TCGA-DA-A3F8-06 1 156263937 156263937 C T C1orf85 Missense_Mutation p.G224R 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-DA-A3F8-06 1 157665297 157665297 G A FCRL3 Silent p.P411P 0.14 TCGA-DA-A3F8-06 1 158259858 158259858 C T CD1C Silent p.L2L 0.20 TCGA-DA-A3F8-06 1 158300834 158300834 G A CD1B Missense_Mutation p.S27F 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-DA-A3F8-06 1 158326534 158326534 C T CD1E Missense_Mutation p.L339F 0.16 tolerated(0.1) possibly_damaging(0.636) TCGA-DA-A3F8-06 1 158369106 158369106 G A OR10T2 Missense_Mutation p.R51C 0.13 tolerated(0.3) benign(0.002) TCGA-DA-A3F8-06 1 158549611 158549611 C T OR10X1 Missense_Mutation p.E27K 0.13 deleterious(0.03) possibly_damaging(0.773) TCGA-DA-A3F8-06 1 158597465 158597465 C T SPTA1 Missense_Mutation p.E1872K 0.14 tolerated(0.81) benign(0.09) TCGA-DA-A3F8-06 1 158725074 158725074 C T OR6K6 Missense_Mutation p.P157S 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A3F8-06 1 158815404 158815404 G A MNDA Missense_Mutation p.V200M 0.10 tolerated(0.12) benign(0.379) TCGA-DA-A3F8-06 1 158911970 158911970 G A PYHIN1 Silent p.R261R 0.19 TCGA-DA-A3F8-06 1 159161803 159161803 G A CADM3 Missense_Mutation p.E90K 0.15 deleterious(0) benign(0.002) TCGA-DA-A3F8-06 1 159283697 159283697 G A OR10J3 Silent p.I251I 0.21 TCGA-DA-A3F8-06 1 159505762 159505762 G A OR10J5 Silent p.F12F 0.17 TCGA-DA-A3F8-06 1 159558188 159558188 C T APCS Missense_Mutation p.S121L 0.09 deleterious(0) probably_damaging(0.98) TCGA-DA-A3F8-06 1 160797708 160797708 C T LY9 3'UTR 0.14 TCGA-DA-A3F8-06 1 161010423 161010423 G A USF1 Silent p.I219I 0.09 TCGA-DA-A3F8-06 1 161024188 161024188 G A ARHGAP30 Silent p.N168N 0.15 TCGA-DA-A3F8-06 1 162482589 162482589 C T UHMK1 Missense_Mutation p.L334F 0.14 tolerated(0.12) benign(0.197) TCGA-DA-A3F8-06 1 163044301 163044301 G A RGS4 Missense_Mutation p.G287E 0.16 tolerated_low_confidence(0.07) benign(0.045) TCGA-DA-A3F8-06 1 16455930 16455930 C T EPHA2 Missense_Mutation p.D942N 0.15 deleterious(0.04) benign(0.429) TCGA-DA-A3F8-06 1 165173164 165173164 G A LMX1A Missense_Mutation p.P368S 0.11 deleterious(0) probably_damaging(0.945) TCGA-DA-A3F8-06 1 165183001 165183001 C T LMX1A Silent p.G182G 0.11 TCGA-DA-A3F8-06 1 170001039 170001039 G T KIFAP3 Missense_Mutation p.Q277K 0.10 tolerated(0.1) possibly_damaging(0.811) TCGA-DA-A3F8-06 1 171086253 171086253 G A FMO3 Missense_Mutation p.E424K 0.16 tolerated(0.37) benign(0.003) TCGA-DA-A3F8-06 1 171244519 171244519 C T FMO1 Missense_Mutation p.S119F 0.16 tolerated(1) benign(0) TCGA-DA-A3F8-06 1 171621175 171621175 G A MYOC Missense_Mutation p.R193W 0.15 deleterious(0.01) possibly_damaging(0.462) TCGA-DA-A3F8-06 1 173556818 173556818 G A SLC9C2 Missense_Mutation p.S170L 0.22 tolerated(0.31) benign(0.438) TCGA-DA-A3F8-06 1 175375845 175375845 C T TNR Silent p.G2G 0.09 TCGA-DA-A3F8-06 1 176563735 176563735 G A PAPPA2 Missense_Mutation p.G332E 0.15 deleterious(0.02) probably_damaging(0.965) TCGA-DA-A3F8-06 1 176760588 176760588 G A PAPPA2 Missense_Mutation p.E1664K 0.22 tolerated(0.26) probably_damaging(0.975) TCGA-DA-A3F8-06 1 177001592 177001592 C T ASTN1 Missense_Mutation p.G289R 0.14 tolerated_low_confidence(0.23) benign(0.022) TCGA-DA-A3F8-06 1 181702859 181702859 C T CACNA1E Missense_Mutation p.P1079S 0.21 tolerated(0.07) possibly_damaging(0.641) TCGA-DA-A3F8-06 1 182025717 182025717 G A ZNF648 Missense_Mutation p.P477S 0.10 tolerated(0.22) benign(0.122) TCGA-DA-A3F8-06 1 1849476 1849476 C T TMEM52 Missense_Mutation p.E159K 0.12 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 1 186276033 186276033 G A PRG4 Silent p.K394K 0.17 TCGA-DA-A3F8-06 1 190067966 190067966 G A BRINP3 Missense_Mutation p.L495F 0.16 deleterious(0.01) possibly_damaging(0.462) TCGA-DA-A3F8-06 1 192544995 192544995 G A RGS1 Missense_Mutation p.E25K 0.19 tolerated(0.26) benign(0.069) TCGA-DA-A3F8-06 1 19653818 19653818 C T PQLC2 Missense_Mutation p.P239L 0.16 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 1 197446814 197446814 C T CRB1 Silent p.S1342S 0.16 TCGA-DA-A3F8-06 1 198721378 198721378 G A PTPRC Missense_Mutation p.E1070K 0.18 deleterious(0.03) possibly_damaging(0.817) TCGA-DA-A3F8-06 1 201031145 201031145 C T CACNA1S Missense_Mutation p.D994N 0.22 tolerated(0.08) benign(0.048) TCGA-DA-A3F8-06 1 201294249 201294249 G A PKP1 Missense_Mutation p.R693Q 0.20 tolerated(0.1) probably_damaging(0.923) TCGA-DA-A3F8-06 1 203140547 203140547 G A MYBPH Silent p.L253L 0.18 TCGA-DA-A3F8-06 1 204129756 204129756 C T REN Missense_Mutation p.G142R 0.11 deleterious(0.01) possibly_damaging(0.768) TCGA-DA-A3F8-06 1 205813319 205813319 G A PM20D1 Silent p.I201I 0.12 TCGA-DA-A3F8-06 1 207131962 207131962 G A FCAMR Nonsense_Mutation p.Q545* 0.16 TCGA-DA-A3F8-06 1 213186685 213186685 A G ANGEL2 Silent p.C45C 0.18 TCGA-DA-A3F8-06 1 214813533 214813533 C T CENPF Silent p.L618L 0.13 TCGA-DA-A3F8-06 1 216138719 216138719 G A USH2A Missense_Mutation p.R2354C 0.12 possibly_damaging(0.582) TCGA-DA-A3F8-06 1 216497030 216497030 G A USH2A Missense_Mutation p.P446S 0.10 possibly_damaging(0.831) TCGA-DA-A3F8-06 1 220170408 220170408 T G EPRS Missense_Mutation p.I820L 0.15 tolerated(0.33) benign(0) TCGA-DA-A3F8-06 1 22159011 22159011 G A HSPG2 Silent p.L3728L 0.17 TCGA-DA-A3F8-06 1 22204953 22204953 G A HSPG2 Nonsense_Mutation p.Q864* 0.14 TCGA-DA-A3F8-06 1 227076736 227076736 C T PSEN2 Missense_Mutation p.A258V 0.22 tolerated(0.95) benign(0.26) TCGA-DA-A3F8-06 1 228520913 228520913 G A OBSCN Missense_Mutation p.G6206R 0.19 probably_damaging(1) TCGA-DA-A3F8-06 1 228547851 228547851 G A OBSCN Intron 0.25 TCGA-DA-A3F8-06 1 229771476 229771476 C T URB2 Silent p.I372I 0.11 TCGA-DA-A3F8-06 1 231830283 231830283 G A DISC1 Missense_Mutation p.R260Q 0.07 tolerated(0.34) benign(0.016) TCGA-DA-A3F8-06 1 233275475 233275475 C T PCNXL2 Missense_Mutation p.R1215Q 0.27 tolerated(0.13) benign(0.043) TCGA-DA-A3F8-06 1 235336015 235336015 G A ARID4B Silent p.I1243I 0.16 TCGA-DA-A3F8-06 1 23650088 23650088 G A HNRNPR Silent p.T212T 0.16 TCGA-DA-A3F8-06 1 236890999 236890999 C T ACTN2 Silent p.L186L 0.20 TCGA-DA-A3F8-06 1 237806680 237806680 C T RYR2 Silent p.S2425S 0.09 TCGA-DA-A3F8-06 1 237843765 237843765 C T RYR2 Missense_Mutation p.P2969S 0.24 probably_damaging(0.995) TCGA-DA-A3F8-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.12 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F8-06 1 2430618 2430618 G A PLCH2 Missense_Mutation p.G817R 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 1 2430619 2430619 G A PLCH2 Missense_Mutation p.G817E 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 1 247150613 247150613 G A ZNF695 Missense_Mutation p.H402Y 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A3F8-06 1 247614919 247614919 C T OR2B11 Missense_Mutation p.M122I 0.17 deleterious(0) possibly_damaging(0.885) TCGA-DA-A3F8-06 1 247875181 247875181 G A OR6F1 Missense_Mutation p.R293C 0.11 deleterious(0.01) benign(0.181) TCGA-DA-A3F8-06 1 248202484 248202484 G A OR2L2 Silent p.Q305Q 0.20 TCGA-DA-A3F8-06 1 248263268 248263268 G A OR2L13 Missense_Mutation p.M197I 0.20 tolerated(0.46) benign(0.012) TCGA-DA-A3F8-06 1 248402361 248402361 C T OR2M4 Missense_Mutation p.S44F 0.17 tolerated(0.06) benign(0.002) TCGA-DA-A3F8-06 1 248402548 248402548 C T OR2M4 Silent p.S106S 0.14 TCGA-DA-A3F8-06 1 248813908 248813908 G A OR2T27 Missense_Mutation p.S93F 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-DA-A3F8-06 1 248845151 248845151 G A OR14I1 Missense_Mutation p.S152F 0.15 tolerated(0.19) benign(0.006) TCGA-DA-A3F8-06 1 2537756 2537756 G A MMEL1 Silent p.F227F 0.17 TCGA-DA-A3F8-06 1 27734648 27734648 G A WASF2 3'UTR 0.09 TCGA-DA-A3F8-06 1 27736635 27736635 G A WASF2 Missense_Mutation p.P297L 0.11 tolerated(0.23) unknown(0) TCGA-DA-A3F8-06 1 27736636 27736636 G A WASF2 Missense_Mutation p.P297S 0.12 tolerated(0.12) unknown(0) TCGA-DA-A3F8-06 1 29649925 29649925 G A PTPRU Missense_Mutation p.G1301S 0.21 tolerated(0.08) probably_damaging(1) TCGA-DA-A3F8-06 1 29649926 29649926 G A PTPRU Missense_Mutation p.G1301D 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 1 3319387 3319387 G A PRDM16 Missense_Mutation p.E237K 0.14 tolerated(0.06) possibly_damaging(0.625) TCGA-DA-A3F8-06 1 3329112 3329112 C T PRDM16 Missense_Mutation p.P784L 0.11 tolerated(0.18) benign(0.019) TCGA-DA-A3F8-06 1 33990614 33990614 G A CSMD2 Silent p.L3278L 0.10 TCGA-DA-A3F8-06 1 34006750 34006750 C T CSMD2 Missense_Mutation p.G3002E 0.17 deleterious(0.03) benign(0.271) TCGA-DA-A3F8-06 1 36385146 36385146 C T AGO1 Nonsense_Mutation p.Q838* 0.24 TCGA-DA-A3F8-06 1 37980287 37980287 C T MEAF6 Missense_Mutation p.E21K 0.12 tolerated(0.06) benign(0.04) TCGA-DA-A3F8-06 1 37980288 37980288 C T MEAF6 Silent p.A20A 0.12 TCGA-DA-A3F8-06 1 3807488 3807488 G A C1orf174 Missense_Mutation p.P88L 0.16 deleterious(0) probably_damaging(0.971) TCGA-DA-A3F8-06 1 39816481 39816481 C T MACF1 Missense_Mutation p.R1602C 0.11 possibly_damaging(0.655) TCGA-DA-A3F8-06 1 41236578 41236578 C A NFYC 3'UTR 0.17 TCGA-DA-A3F8-06 1 42046504 42046504 C T HIVEP3 Missense_Mutation p.R1322H 0.17 probably_damaging(0.998) TCGA-DA-A3F8-06 1 42657234 42657234 G A FOXJ3 Missense_Mutation p.S364L 0.15 tolerated(0.3) benign(0.174) TCGA-DA-A3F8-06 1 43102988 43102988 G A CCDC30 Missense_Mutation p.R526Q 0.14 deleterious(0.02) benign(0.424) TCGA-DA-A3F8-06 1 44035274 44035274 C T PTPRF Silent p.P131P 0.15 TCGA-DA-A3F8-06 1 45120617 45120617 T C TMEM53 Missense_Mutation p.N150D 0.16 deleterious(0.04) benign(0.248) TCGA-DA-A3F8-06 1 46295125 46295125 C T MAST2 Missense_Mutation p.P114S 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A3F8-06 1 46489570 46489570 C T MAST2 Silent p.F566F 0.14 TCGA-DA-A3F8-06 1 46978206 46978206 C T DMBX1 3'UTR 0.15 TCGA-DA-A3F8-06 1 47351161 47351161 G A CYP4Z2P RNA 0.10 TCGA-DA-A3F8-06 1 47400826 47400826 C T CYP4A11 Silent p.R212R 0.10 TCGA-DA-A3F8-06 1 47406926 47406926 G A CYP4A11 Silent p.F60F 0.12 TCGA-DA-A3F8-06 1 50666738 50666738 C T ELAVL4 Missense_Mutation p.T347I 0.16 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 1 53699256 53699256 C T MAGOH Silent p.E72E 0.13 TCGA-DA-A3F8-06 1 53741397 53741397 G A LRP8 Silent p.F304F 0.14 TCGA-DA-A3F8-06 1 57209928 57209928 C T C1orf168 Missense_Mutation p.E467K 0.27 tolerated(0.28) benign(0.199) TCGA-DA-A3F8-06 1 57347158 57347158 G A C8A Missense_Mutation p.D169N 0.17 deleterious(0) probably_damaging(0.951) TCGA-DA-A3F8-06 1 57480751 57480751 C T DAB1 Missense_Mutation p.D417N 0.11 tolerated(0.09) possibly_damaging(0.81) TCGA-DA-A3F8-06 1 6184141 6184141 C T CHD5 Silent p.G1522G 0.15 TCGA-DA-A3F8-06 1 63307111 63307111 C T ATG4C Missense_Mutation p.P368S 0.19 tolerated(0.55) benign(0.367) TCGA-DA-A3F8-06 1 63307112 63307112 C T ATG4C Missense_Mutation p.P368L 0.19 deleterious(0.04) probably_damaging(0.943) TCGA-DA-A3F8-06 1 65852574 65852574 C T DNAJC6 Missense_Mutation p.H359Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 1 68591929 68591929 G A WLS Intron 0.08 TCGA-DA-A3F8-06 1 68591930 68591930 G A WLS Intron 0.08 TCGA-DA-A3F8-06 1 68905282 68905282 G A RPE65 Silent p.F229F 0.11 TCGA-DA-A3F8-06 1 70505037 70505037 C T LRRC7 Missense_Mutation p.P1139L 0.13 tolerated(0.22) benign(0.024) TCGA-DA-A3F8-06 1 75602798 75602798 G A LHX8 Missense_Mutation p.G40E 0.16 tolerated_low_confidence(0.32) benign(0.029) TCGA-DA-A3F8-06 1 75608843 75608843 C T LHX8 Missense_Mutation p.H144Y 0.16 tolerated(0.71) probably_damaging(0.944) TCGA-DA-A3F8-06 1 76384833 76384833 C A ASB17 Missense_Mutation p.S231I 0.17 deleterious(0) possibly_damaging(0.766) TCGA-DA-A3F8-06 1 7725052 7725052 C T CAMTA1 Silent p.T815T 0.12 TCGA-DA-A3F8-06 1 87208012 87208012 C T SH3GLB1 Missense_Mutation p.P316S 0.15 tolerated(0.14) benign(0.003) TCGA-DA-A3F8-06 1 89730439 89730439 C T GBP5 Missense_Mutation p.R360K 0.14 tolerated(1) benign(0.002) TCGA-DA-A3F8-06 1 91740286 91740286 C T HFM1 Splice_Site p.X1223_splice 0.14 TCGA-DA-A3F8-06 1 92852591 92852591 G A RPAP2 3'UTR 0.08 TCGA-DA-A3F8-06 1 94473802 94473802 G A ABCA4 Missense_Mutation p.R1963C 0.12 deleterious(0.01) possibly_damaging(0.677) TCGA-DA-A3F8-06 1 94669541 94669541 G A ARHGAP29 Missense_Mutation p.S236F 0.16 tolerated(1) probably_damaging(0.998) TCGA-DA-A3F8-06 1 94674859 94674859 G A ARHGAP29 Nonsense_Mutation p.Q130* 0.28 TCGA-DA-A3F8-06 1 97658765 97658765 C T DPYD Missense_Mutation p.E828K 0.17 tolerated(0.17) benign(0.011) TCGA-DA-A3F8-06 1 979020 979020 C T AGRN Missense_Mutation p.S569F 0.12 deleterious(0) possibly_damaging(0.788) TCGA-DA-A3F8-06 20 10030780 10030780 G A ANKEF1 Silent p.K521K 0.20 TCGA-DA-A3F8-06 20 1961379 1961379 C T PDYN Missense_Mutation p.E119K 0.18 tolerated(0.07) benign(0.085) TCGA-DA-A3F8-06 20 20232362 20232362 C T C20orf26 Silent p.I761I 0.19 TCGA-DA-A3F8-06 20 23545595 23545595 C T CST9L Missense_Mutation p.G145E 0.22 deleterious(0) probably_damaging(0.988) TCGA-DA-A3F8-06 20 2378579 2378579 C T TGM6 Silent p.L187L 0.24 TCGA-DA-A3F8-06 20 2795836 2795836 C T C20orf141 Silent p.T2T 0.16 TCGA-DA-A3F8-06 20 31607401 31607401 C T BPIFB2 Missense_Mutation p.P309S 0.12 deleterious(0.03) probably_damaging(1) TCGA-DA-A3F8-06 20 31652477 31652477 C T BPIFB3 Silent p.I250I 0.09 TCGA-DA-A3F8-06 20 31828181 31828181 C T BPIFA1 Silent p.L191L 0.17 TCGA-DA-A3F8-06 20 32217568 32217568 C T CBFA2T2 Missense_Mutation p.S368F 0.21 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 20 33329490 33329490 C T NCOA6 Missense_Mutation p.D1524N 0.13 benign(0.124) TCGA-DA-A3F8-06 20 33329491 33329491 C T NCOA6 Silent p.E1523E 0.14 TCGA-DA-A3F8-06 20 33874332 33874332 C T FAM83C 3'UTR 0.32 TCGA-DA-A3F8-06 20 34022671 34022671 C T GDF5OS Missense_Mutation p.P239S 0.19 deleterious_low_confidence(0) possibly_damaging(0.81) TCGA-DA-A3F8-06 20 34430609 34430609 C T PHF20 Silent p.R66R 0.12 TCGA-DA-A3F8-06 20 34783264 34783264 C T EPB41L1 Missense_Mutation p.T488I 0.15 tolerated(0.2) benign(0.186) TCGA-DA-A3F8-06 20 35075257 35075257 C T DLGAP4 Missense_Mutation p.S522L 0.20 deleterious(0.03) benign(0.02) TCGA-DA-A3F8-06 20 3520922 3520922 G A ATRN Nonsense_Mutation p.W183* 0.20 TCGA-DA-A3F8-06 20 36386000 36386000 C G CTNNBL1 Missense_Mutation p.T169R 0.13 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 20 37547025 37547025 G A PPP1R16B Missense_Mutation p.E474K 0.12 tolerated(0.14) benign(0.056) TCGA-DA-A3F8-06 20 37631466 37631466 C T DHX35 Silent p.H269H 0.17 TCGA-DA-A3F8-06 20 39801100 39801100 C T PLCG1 Missense_Mutation p.S982F 0.25 deleterious(0.02) probably_damaging(1) TCGA-DA-A3F8-06 20 40747137 40747137 G A PTPRT Missense_Mutation p.P963L 0.20 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 20 40827881 40827881 G A PTPRT Silent p.F830F 0.17 TCGA-DA-A3F8-06 20 41076902 41076902 C T PTPRT Nonsense_Mutation p.W506* 0.20 TCGA-DA-A3F8-06 20 41419882 41419882 C T PTPRT Missense_Mutation p.V147M 0.13 tolerated(0.22) probably_damaging(0.993) TCGA-DA-A3F8-06 20 41419972 41419972 G A PTPRT Missense_Mutation p.P117S 0.20 deleterious(0) probably_damaging(0.965) TCGA-DA-A3F8-06 20 4228549 4228549 G A ADRA1D Silent p.I352I 0.19 TCGA-DA-A3F8-06 20 42694565 42694565 C T TOX2 Missense_Mutation p.P392S 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A3F8-06 20 42979572 42979572 C T R3HDML 3'UTR 0.33 TCGA-DA-A3F8-06 20 43058370 43058370 C T HNF4A 3'UTR 0.17 TCGA-DA-A3F8-06 20 44521930 44521930 C T CTSA Silent p.Y242Y 0.09 TCGA-DA-A3F8-06 20 44521931 44521931 C T CTSA Missense_Mutation p.H243Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-DA-A3F8-06 20 49218838 49218838 C T FAM65C Missense_Mutation p.G473E 0.09 tolerated(0.32) benign(0.012) TCGA-DA-A3F8-06 20 51872321 51872321 C T TSHZ2 Missense_Mutation p.A775V 0.19 tolerated(0.5) benign(0.118) TCGA-DA-A3F8-06 20 52645041 52645041 C T BCAS1 Missense_Mutation p.E205K 0.16 deleterious(0) possibly_damaging(0.713) TCGA-DA-A3F8-06 20 57428698 57428698 G A GNAS Silent p.G126G 0.19 TCGA-DA-A3F8-06 20 60498607 60498607 G A CDH4 Silent p.T491T 0.17 TCGA-DA-A3F8-06 20 60988583 60988583 G A RBBP8NL Missense_Mutation p.P517S 0.22 deleterious(0.04) benign(0.012) TCGA-DA-A3F8-06 20 61438869 61438869 C T OGFR Intron 0.16 TCGA-DA-A3F8-06 20 61468540 61468540 C T COL9A3 Missense_Mutation p.S570F 0.17 tolerated(0.48) probably_damaging(0.998) TCGA-DA-A3F8-06 20 62038720 62038720 G A KCNQ2 Silent p.S632S 0.12 TCGA-DA-A3F8-06 21 10862781 10862781 C T IGHV1OR21-1 Missense_Mutation p.S26F 0.08 deleterious(0) probably_damaging(0.952) TCGA-DA-A3F8-06 21 15745972 15745972 G A HSPA13 Missense_Mutation p.P461L 0.12 deleterious(0) probably_damaging(0.997) TCGA-DA-A3F8-06 21 15755478 15755478 G A HSPA13 5'UTR 0.15 TCGA-DA-A3F8-06 21 19169217 19169217 G A C21orf91 Missense_Mutation p.P116S 0.17 tolerated_low_confidence(1) benign(0.003) TCGA-DA-A3F8-06 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.38 deleterious_low_confidence(0.03) unknown(0) TCGA-DA-A3F8-06 21 34876803 34876803 G A GART Silent p.L919L 0.11 TCGA-DA-A3F8-06 21 37618856 37618856 C T DOPEY2 Silent p.S1526S 0.17 TCGA-DA-A3F8-06 21 39817410 39817410 G A ERG Silent p.V58V 0.12 TCGA-DA-A3F8-06 21 45833815 45833815 G A TRPM2 Missense_Mutation p.D1002N 0.20 tolerated(0.1) possibly_damaging(0.905) TCGA-DA-A3F8-06 22 16266996 16266996 G A POTEH Missense_Mutation p.P485S 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-DA-A3F8-06 22 17072928 17072928 G A CCT8L2 Silent p.T171T 0.20 TCGA-DA-A3F8-06 22 18643005 18643005 T A USP18 Missense_Mutation p.M75K 0.19 deleterious(0) possibly_damaging(0.794) TCGA-DA-A3F8-06 22 19119651 19119651 G A TSSK2 Missense_Mutation p.D247N 0.24 tolerated(0.08) possibly_damaging(0.549) TCGA-DA-A3F8-06 22 21350394 21350394 G A LZTR1 Missense_Mutation p.D738N 0.14 tolerated(0.06) probably_damaging(1) TCGA-DA-A3F8-06 22 30659890 30659890 C T OSM Silent p.R247R 0.16 TCGA-DA-A3F8-06 22 30864540 30864540 C T SEC14L3 Silent p.R126R 0.17 TCGA-DA-A3F8-06 22 31338098 31338098 C T MORC2 Splice_Site p.X134_splice 0.16 TCGA-DA-A3F8-06 22 32108221 32108221 G A PRR14L Silent p.S1868S 0.16 TCGA-DA-A3F8-06 22 35478514 35478514 G A ISX Missense_Mutation p.G78E 0.20 tolerated(1) benign(0.002) TCGA-DA-A3F8-06 22 38038706 38038706 C T SH3BP1 Intron 0.12 TCGA-DA-A3F8-06 22 38087389 38087389 C T NOL12 3'UTR 0.18 TCGA-DA-A3F8-06 22 38245426 38245426 C T EIF3L 5'UTR 0.16 TCGA-DA-A3F8-06 22 38823276 38823276 C T KCNJ4 Missense_Mutation p.V288I 0.14 deleterious(0.03) possibly_damaging(0.646) TCGA-DA-A3F8-06 22 41864692 41864692 G A PHF5A 5'UTR 0.19 TCGA-DA-A3F8-06 22 43088980 43088980 G A A4GALT Silent p.F326F 0.24 TCGA-DA-A3F8-06 22 50728628 50728628 G A PLXNB2 Missense_Mutation p.S129F 0.15 deleterious(0.01) probably_damaging(0.966) TCGA-DA-A3F8-06 22 51159460 51159460 G A SHANK3 Missense_Mutation p.D1083N 0.27 possibly_damaging(0.539) TCGA-DA-A3F8-06 2 102804374 102804374 C T IL1RL2 Missense_Mutation p.S16F 0.10 tolerated(1) benign(0.001) TCGA-DA-A3F8-06 2 103121890 103121890 C T SLC9A4 Silent p.I386I 0.13 TCGA-DA-A3F8-06 2 108475848 108475848 G A RGPD4 Missense_Mutation p.G491E 0.45 deleterious(0) probably_damaging(0.972) TCGA-DA-A3F8-06 2 108614302 108614302 A T SLC5A7 Missense_Mutation p.I153F 0.38 deleterious(0.04) benign(0.05) TCGA-DA-A3F8-06 2 108881765 108881765 G A SULT1C3 Silent p.K291K 0.13 TCGA-DA-A3F8-06 2 113786542 113786542 G A IL36B Nonsense_Mutation p.Q79* 0.38 TCGA-DA-A3F8-06 2 11802338 11802338 G A NTSR2 Missense_Mutation p.P218L 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 2 122005828 122005828 C T TFCP2L1 Missense_Mutation p.G139D 0.30 deleterious(0) possibly_damaging(0.645) TCGA-DA-A3F8-06 2 125521373 125521373 G A CNTNAP5 Missense_Mutation p.D786N 0.47 deleterious(0.02) possibly_damaging(0.881) TCGA-DA-A3F8-06 2 125671812 125671812 G A CNTNAP5 Missense_Mutation p.E1290K 0.16 deleterious(0.01) benign(0.027) TCGA-DA-A3F8-06 2 128327434 128327434 C T MYO7B Nonsense_Mutation p.Q181* 0.52 TCGA-DA-A3F8-06 2 132054486 132054486 G A CYP4F31P 3'Flank 0.50 TCGA-DA-A3F8-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.29 deleterious(0.02) possibly_damaging(0.486) TCGA-DA-A3F8-06 2 137814349 137814349 C T THSD7B Missense_Mutation p.P167S 0.41 tolerated(0.31) probably_damaging(0.986) TCGA-DA-A3F8-06 2 141072507 141072507 G A LRP1B Silent p.L4268L 0.28 TCGA-DA-A3F8-06 2 141083389 141083389 G A LRP1B Silent p.I4094I 0.30 TCGA-DA-A3F8-06 2 141660651 141660651 C T LRP1B Missense_Mutation p.G1202R 0.44 probably_damaging(0.953) TCGA-DA-A3F8-06 2 1499897 1499897 C T TPO Missense_Mutation p.P715S 0.42 deleterious(0.04) probably_damaging(0.992) TCGA-DA-A3F8-06 2 152536534 152536534 G A NEB Silent p.I1015I 0.21 TCGA-DA-A3F8-06 2 155566141 155566141 C T KCNJ3 Silent p.F243F 0.41 TCGA-DA-A3F8-06 2 158287454 158287454 C T CYTIP Silent p.Q100Q 0.39 TCGA-DA-A3F8-06 2 163241233 163241233 C T KCNH7 Missense_Mutation p.R976K 0.27 tolerated(0.92) benign(0.001) TCGA-DA-A3F8-06 2 166243485 166243485 G A SCN2A Nonsense_Mutation p.W1594* 0.26 TCGA-DA-A3F8-06 2 167162417 167162417 C T SCN9A Missense_Mutation p.G161R 0.28 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.43 probably_damaging(0.999) TCGA-DA-A3F8-06 2 169791714 169791714 G A ABCB11 Silent p.L1012L 0.28 TCGA-DA-A3F8-06 2 171509674 171509674 C T MYO3B 3'UTR 0.14 TCGA-DA-A3F8-06 2 17913100 17913100 G A SMC6 Missense_Mutation p.A130V 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 2 179226427 179226427 C T OSBPL6 Missense_Mutation p.S416F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 2 179423233 179423233 C T TTN Missense_Mutation p.G28985R 0.36 TCGA-DA-A3F8-06 2 179444921 179444921 C T TTN Missense_Mutation p.E22365K 0.39 TCGA-DA-A3F8-06 2 179570033 179570033 C T TTN Missense_Mutation p.M9824I 0.33 TCGA-DA-A3F8-06 2 179583614 179583614 G T TTN Missense_Mutation p.P8105T 0.32 TCGA-DA-A3F8-06 2 179585804 179585804 C T TTN Missense_Mutation p.E7648K 0.20 TCGA-DA-A3F8-06 2 179587872 179587872 C T TTN Missense_Mutation p.E7288K 0.25 TCGA-DA-A3F8-06 2 179597238 179597238 G A TTN Missense_Mutation p.S5517L 0.50 TCGA-DA-A3F8-06 2 179613716 179613716 C T TTN Intron 0.19 TCGA-DA-A3F8-06 2 179710428 179710428 G A CCDC141 Silent p.F1133F 0.39 TCGA-DA-A3F8-06 2 18113148 18113148 C T KCNS3 Silent p.I291I 0.23 TCGA-DA-A3F8-06 2 182374525 182374525 G A ITGA4 Missense_Mutation p.M612I 0.21 tolerated(1) benign(0) TCGA-DA-A3F8-06 2 185798364 185798364 G A ZNF804A Missense_Mutation p.R97Q 0.16 deleterious(0) probably_damaging(0.915) TCGA-DA-A3F8-06 2 185802855 185802855 C T ZNF804A Missense_Mutation p.S911F 0.48 tolerated(0.64) probably_damaging(0.979) TCGA-DA-A3F8-06 2 187693001 187693001 G A ZSWIM2 Missense_Mutation p.H538Y 0.33 tolerated(0.22) benign(0.006) TCGA-DA-A3F8-06 2 197184479 197184479 C T HECW2 Missense_Mutation p.D379N 0.09 tolerated_low_confidence(0.48) benign(0) TCGA-DA-A3F8-06 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 2 201434420 201434420 G A SGOL2 Missense_Mutation p.D170N 0.41 tolerated(0.05) possibly_damaging(0.888) TCGA-DA-A3F8-06 2 207175137 207175137 G A ZDBF2 Missense_Mutation p.R1962K 0.36 tolerated(0.49) benign(0.067) TCGA-DA-A3F8-06 2 21227188 21227188 C T APOB Missense_Mutation p.D4014N 0.27 benign(0.016) TCGA-DA-A3F8-06 2 213872264 213872264 C T IKZF2 Silent p.Q467Q 0.19 TCGA-DA-A3F8-06 2 215278963 215278963 C T VWC2L Missense_Mutation p.P16S 0.22 tolerated_low_confidence(0.62) benign(0.017) TCGA-DA-A3F8-06 2 218925212 218925212 G A CXCR2P1 RNA 0.27 TCGA-DA-A3F8-06 2 219677362 219677362 G A CYP27A1 Missense_Mutation p.G245E 0.39 tolerated(0.05) benign(0.049) TCGA-DA-A3F8-06 2 219903680 219903680 G A CCDC108 Missense_Mutation p.P31S 0.26 tolerated_low_confidence(0.68) benign(0.001) TCGA-DA-A3F8-06 2 220037365 220037365 A G CNPPD1 Silent p.C392C 0.17 TCGA-DA-A3F8-06 2 222347181 222347181 G A EPHA4 Silent p.L403L 0.29 TCGA-DA-A3F8-06 2 223559157 223559157 C T MOGAT1 Silent p.V185V 0.10 TCGA-DA-A3F8-06 2 226447249 226447249 G A NYAP2 Missense_Mutation p.M372I 0.40 tolerated(0.29) benign(0) TCGA-DA-A3F8-06 2 227924301 227924301 C T COL4A4 Missense_Mutation p.E735K 0.38 possibly_damaging(0.874) TCGA-DA-A3F8-06 2 228552044 228552044 A C SLC19A3 3'UTR 0.26 TCGA-DA-A3F8-06 2 228882663 228882663 C T SPHKAP Silent p.L969L 0.35 TCGA-DA-A3F8-06 2 228884687 228884687 C T SPHKAP Missense_Mutation p.A295T 0.15 tolerated(0.66) benign(0.004) TCGA-DA-A3F8-06 2 229890376 229890376 G A PID1 Missense_Mutation p.S240F 0.28 deleterious(0) probably_damaging(0.991) TCGA-DA-A3F8-06 2 231101813 231101813 C T SP140 Silent p.I25I 0.24 TCGA-DA-A3F8-06 2 231663609 231663609 C T CAB39 Silent p.F188F 0.22 TCGA-DA-A3F8-06 2 238245121 238245121 C T COL6A3 Silent p.T2874T 0.39 TCGA-DA-A3F8-06 2 239039092 239039092 C T ESPNL Silent p.A579A 0.45 TCGA-DA-A3F8-06 2 241976319 241976319 G A SNED1 Silent p.R306R 0.19 TCGA-DA-A3F8-06 2 25464459 25464459 C T DNMT3A Missense_Mutation p.G685E 0.28 tolerated(0.07) probably_damaging(0.987) TCGA-DA-A3F8-06 2 27731112 27731112 C T GCKR Silent p.F472F 0.18 TCGA-DA-A3F8-06 2 31564236 31564236 C T XDH Missense_Mutation p.D1182N 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 2 31570422 31570422 G A XDH Missense_Mutation p.S1081F 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 2 33487839 33487839 C T LTBP1 Silent p.P823P 0.48 TCGA-DA-A3F8-06 2 47378648 47378648 G A C2orf61 Missense_Mutation p.P50S 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 2 48915316 48915316 G A LHCGR Silent p.F540F 0.26 TCGA-DA-A3F8-06 2 54081075 54081075 C T GPR75 Silent p.R273R 0.41 TCGA-DA-A3F8-06 2 56144909 56144909 G A EFEMP1 Silent p.N136N 0.43 TCGA-DA-A3F8-06 2 68962352 68962352 G A ARHGAP25 Silent p.R7R 0.13 TCGA-DA-A3F8-06 2 70890763 70890763 C T ADD2 Missense_Mutation p.E659K 0.15 deleterious(0.03) benign(0.411) TCGA-DA-A3F8-06 2 71762423 71762423 G A DYSF Missense_Mutation p.R492K 0.29 tolerated(1) benign(0.001) TCGA-DA-A3F8-06 2 71909780 71909780 C T DYSF Silent p.F2098F 0.20 TCGA-DA-A3F8-06 2 74462303 74462303 G A SLC4A5 Silent p.S786S 0.27 TCGA-DA-A3F8-06 2 74597837 74597837 G A DCTN1 Missense_Mutation p.S320F 0.28 deleterious(0) probably_damaging(0.979) TCGA-DA-A3F8-06 2 86459843 86459843 G A REEP1 Missense_Mutation p.P174L 0.56 tolerated(0.32) possibly_damaging(0.908) TCGA-DA-A3F8-06 2 87017736 87017736 C T CD8A Missense_Mutation p.E40K 0.39 tolerated(0.33) benign(0.054) TCGA-DA-A3F8-06 2 89476119 89476119 G A IGKV2-24 Missense_Mutation p.S18F 0.33 deleterious(0.03) benign(0.429) TCGA-DA-A3F8-06 2 9002816 9002816 G A MBOAT2 Silent p.I363I 0.09 TCGA-DA-A3F8-06 2 98750402 98750402 G A VWA3B Missense_Mutation p.G330R 0.20 deleterious(0.01) probably_damaging(1) TCGA-DA-A3F8-06 3 10089677 10089677 C T FANCD2 Missense_Mutation p.S452L 0.07 tolerated(0.74) benign(0.012) TCGA-DA-A3F8-06 3 101384585 101384585 G T ZBTB11 Missense_Mutation p.F282L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A3F8-06 3 101576282 101576282 C T NFKBIZ Silent p.P694P 0.21 TCGA-DA-A3F8-06 3 108229378 108229378 C T MYH15 Silent p.K20K 0.32 TCGA-DA-A3F8-06 3 10970962 10970962 G A SLC6A11 Silent p.R436R 0.14 TCGA-DA-A3F8-06 3 11064035 11064035 C T SLC6A1 Nonsense_Mutation p.Q199* 0.12 TCGA-DA-A3F8-06 3 111603641 111603641 G A PHLDB2 Silent p.R239R 0.11 TCGA-DA-A3F8-06 3 111603908 111603908 C T PHLDB2 Silent p.T328T 0.24 TCGA-DA-A3F8-06 3 112066513 112066513 C T CD200 Missense_Mutation p.S202L 0.14 tolerated(0.08) benign(0.049) TCGA-DA-A3F8-06 3 11301793 11301793 C T HRH1 Missense_Mutation p.S357F 0.22 deleterious(0.01) possibly_damaging(0.844) TCGA-DA-A3F8-06 3 113375235 113375235 G A KIAA2018 Missense_Mutation p.S1765L 0.29 benign(0.309) TCGA-DA-A3F8-06 3 120976074 120976074 C T STXBP5L Missense_Mutation p.P576S 0.23 tolerated(0.34) benign(0.005) TCGA-DA-A3F8-06 3 121634153 121634153 C T SLC15A2 Missense_Mutation p.P203L 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 3 121647961 121647961 C T SLC15A2 Missense_Mutation p.R492C 0.20 tolerated(0.17) benign(0.009) TCGA-DA-A3F8-06 3 121712496 121712496 C T ILDR1 Missense_Mutation p.G367E 0.18 tolerated(0.32) benign(0.017) TCGA-DA-A3F8-06 3 122002865 122002865 C T CASR Silent p.F698F 0.28 TCGA-DA-A3F8-06 3 12224997 12224997 G A SYN2 RNA 0.18 TCGA-DA-A3F8-06 3 122645327 122645327 C T SEMA5B Missense_Mutation p.G404S 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 3 122645328 122645328 C T SEMA5B Silent p.P403P 0.26 TCGA-DA-A3F8-06 3 124201686 124201686 C T KALRN Missense_Mutation p.S1406F 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-DA-A3F8-06 3 127339643 127339643 G A MCM2 Missense_Mutation p.D790N 0.28 deleterious(0) probably_damaging(0.983) TCGA-DA-A3F8-06 3 127646797 127646797 C T KBTBD12 Missense_Mutation p.P421S 0.33 deleterious(0.04) probably_damaging(1) TCGA-DA-A3F8-06 3 129127593 129127593 C T EFCAB12 Missense_Mutation p.E382K 0.16 tolerated(0.06) benign(0.242) TCGA-DA-A3F8-06 3 130292941 130292941 G A COL6A6 Missense_Mutation p.G1040E 0.20 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 3 140265383 140265383 G T CLSTN2 Missense_Mutation p.A512S 0.27 tolerated(0.53) benign(0.02) TCGA-DA-A3F8-06 3 14154632 14154632 C T CHCHD4 Missense_Mutation p.G75S 0.15 deleterious(0.02) possibly_damaging(0.83) TCGA-DA-A3F8-06 3 14223144 14223144 G A LSM3 Missense_Mutation p.D36N 0.20 tolerated(0.11) benign(0.12) TCGA-DA-A3F8-06 3 142405184 142405184 G A PLS1 Missense_Mutation p.G316E 0.15 tolerated(1) benign(0) TCGA-DA-A3F8-06 3 148596241 148596241 G A CPA3 Missense_Mutation p.D95N 0.18 tolerated(0.78) benign(0.058) TCGA-DA-A3F8-06 3 151012039 151012039 C T GPR87 Missense_Mutation p.R332K 0.21 tolerated(1) probably_damaging(0.986) TCGA-DA-A3F8-06 3 151046014 151046014 G A P2RY13 Missense_Mutation p.P277L 0.35 deleterious(0) probably_damaging(0.966) TCGA-DA-A3F8-06 3 160073835 160073835 G A IFT80 Missense_Mutation p.S248L 0.15 tolerated(0.06) benign(0.141) TCGA-DA-A3F8-06 3 161221265 161221265 G A OTOL1 Silent p.G323G 0.21 TCGA-DA-A3F8-06 3 16252648 16252648 G A GALNT15 Missense_Mutation p.G366E 0.12 deleterious(0) possibly_damaging(0.486) TCGA-DA-A3F8-06 3 164783091 164783091 C T SI Nonsense_Mutation p.W255* 0.26 TCGA-DA-A3F8-06 3 167245782 167245782 C T WDR49 Silent p.K458K 0.19 TCGA-DA-A3F8-06 3 168834131 168834131 G A MECOM Missense_Mutation p.S387F 0.21 deleterious(0.02) possibly_damaging(0.828) TCGA-DA-A3F8-06 3 17051447 17051447 C T PLCL2 Silent p.F77F 0.18 TCGA-DA-A3F8-06 3 170893073 170893073 C T TNIK Silent p.R247R 0.11 TCGA-DA-A3F8-06 3 180327498 180327498 C T TTC14 Missense_Mutation p.S494F 0.19 deleterious(0) unknown(0) TCGA-DA-A3F8-06 3 182759359 182759359 C T MCCC1 Silent p.R421R 0.10 TCGA-DA-A3F8-06 3 184100457 184100457 C T CHRD Missense_Mutation p.P293S 0.15 tolerated(0.59) benign(0.016) TCGA-DA-A3F8-06 3 184106376 184106376 G A CHRD Silent p.V852V 0.26 TCGA-DA-A3F8-06 3 185390337 185390337 G A IGF2BP2 Missense_Mutation p.P398S 0.12 tolerated(0.35) probably_damaging(0.998) TCGA-DA-A3F8-06 3 185407293 185407293 G A IGF2BP2 Missense_Mutation p.S176F 0.12 tolerated(0.3) possibly_damaging(0.845) TCGA-DA-A3F8-06 3 186572062 186572062 G A ADIPOQ Missense_Mutation p.G102R 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 3 193032768 193032768 C T ATP13A5 Missense_Mutation p.M717I 0.14 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 3 193040355 193040355 T C ATP13A5 Silent p.E561E 0.13 TCGA-DA-A3F8-06 3 193052888 193052888 C T ATP13A5 Missense_Mutation p.G315E 0.10 deleterious(0.01) probably_damaging(1) TCGA-DA-A3F8-06 3 194151735 194151735 G A ATP13A3 Missense_Mutation p.T854I 0.18 deleterious(0) probably_damaging(0.97) TCGA-DA-A3F8-06 3 29925699 29925699 G A RBMS3 Missense_Mutation p.G264E 0.13 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 3 30769720 30769720 G A GADL1 3'UTR 0.13 TCGA-DA-A3F8-06 3 35729321 35729321 G A ARPP21 Missense_Mutation p.D118N 0.24 tolerated(0.1) possibly_damaging(0.637) TCGA-DA-A3F8-06 3 35770838 35770838 C T ARPP21 Silent p.S389S 0.16 TCGA-DA-A3F8-06 3 36422224 36422224 C T STAC Missense_Mutation p.S30F 0.33 deleterious(0.01) possibly_damaging(0.453) TCGA-DA-A3F8-06 3 36422225 36422225 C T STAC Silent p.S30S 0.34 TCGA-DA-A3F8-06 3 36897417 36897417 C T TRANK1 Missense_Mutation p.E1222K 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A3F8-06 3 36898287 36898287 C T TRANK1 Missense_Mutation p.G932S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A3F8-06 3 38035943 38035943 C T VILL Silent p.F109F 0.18 TCGA-DA-A3F8-06 3 38627269 38627269 G A SCN5A Silent p.I900I 0.29 TCGA-DA-A3F8-06 3 38739534 38739534 T A SCN10A Missense_Mutation p.N1726I 0.29 deleterious(0) probably_damaging(0.933) TCGA-DA-A3F8-06 3 38927694 38927694 C T SCN11A Silent p.T957T 0.13 TCGA-DA-A3F8-06 3 38936092 38936092 C T SCN11A Missense_Mutation p.E923K 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-DA-A3F8-06 3 39228702 39228702 G A XIRP1 Silent p.I745I 0.32 TCGA-DA-A3F8-06 3 42787503 42787503 A G CCDC13 Missense_Mutation p.V246A 0.14 deleterious(0.01) benign(0.442) TCGA-DA-A3F8-06 3 42906109 42906109 G A ACKR2 Missense_Mutation p.D39N 0.17 deleterious(0.01) possibly_damaging(0.698) TCGA-DA-A3F8-06 3 46014621 46014621 C T FYCO1 Silent p.S166S 0.13 TCGA-DA-A3F8-06 3 46307675 46307675 C T CCR3 Silent p.V363V 0.16 TCGA-DA-A3F8-06 3 46399786 46399786 G A CCR2 Nonsense_Mutation p.W256* 0.27 TCGA-DA-A3F8-06 3 48219361 48219361 C T CDC25A Missense_Mutation p.D223N 0.16 deleterious(0.02) benign(0.114) TCGA-DA-A3F8-06 3 4854888 4854888 G A ITPR1 Missense_Mutation p.E2496K 0.13 tolerated(0.15) benign(0.122) TCGA-DA-A3F8-06 3 48698456 48698456 C T CELSR3 Missense_Mutation p.E538K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F8-06 3 49690916 49690916 C T BSN Silent p.T1309T 0.18 TCGA-DA-A3F8-06 3 49690917 49690917 C T BSN Missense_Mutation p.P1310S 0.18 unknown(0) TCGA-DA-A3F8-06 3 5023178 5023178 C T BHLHE40 Silent p.A120A 0.13 TCGA-DA-A3F8-06 3 5023179 5023179 C T BHLHE40 Silent p.L121L 0.13 TCGA-DA-A3F8-06 3 5214354 5214354 C T ARL8B Missense_Mutation p.R101C 0.13 tolerated(0.09) possibly_damaging(0.617) TCGA-DA-A3F8-06 3 52406983 52406983 C T DNAH1 Missense_Mutation p.A2300V 0.09 benign(0.081) TCGA-DA-A3F8-06 3 52553575 52553575 C T STAB1 Silent p.L1744L 0.09 TCGA-DA-A3F8-06 3 52568562 52568562 G A NT5DC2 5'Flank 0.25 TCGA-DA-A3F8-06 3 55107561 55107561 C T CACNA2D3 Missense_Mutation p.T1026I 0.23 tolerated(0.1) probably_damaging(0.996) TCGA-DA-A3F8-06 3 56468790 56468790 C T ERC2 Silent p.L82L 0.11 TCGA-DA-A3F8-06 3 64085072 64085072 C T PRICKLE2 Silent p.R730R 0.18 TCGA-DA-A3F8-06 3 65415300 65415300 C T MAGI1 Missense_Mutation p.E688K 0.10 deleterious(0) probably_damaging(0.99) TCGA-DA-A3F8-06 3 65415301 65415301 C T MAGI1 Silent p.V687V 0.10 TCGA-DA-A3F8-06 3 69245538 69245538 G A FRMD4B Missense_Mutation p.P368S 0.11 tolerated(0.53) benign(0.005) TCGA-DA-A3F8-06 3 8667946 8667946 G A SSUH2 Silent p.L246L 0.30 TCGA-DA-A3F8-06 3 9057395 9057395 C T SRGAP3 Missense_Mutation p.D567N 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-DA-A3F8-06 3 9166573 9166573 G A SRGAP3 Silent p.F32F 0.22 TCGA-DA-A3F8-06 3 93598096 93598096 C T PROS1 Missense_Mutation p.G519S 0.17 tolerated(0.65) benign(0.124) TCGA-DA-A3F8-06 3 96706696 96706696 G A EPHA6 Missense_Mutation p.E325K 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-DA-A3F8-06 3 96945212 96945212 G A EPHA6 Missense_Mutation p.E407K 0.24 tolerated(0.11) possibly_damaging(0.604) TCGA-DA-A3F8-06 3 97356782 97356782 G A EPHA6 Missense_Mutation p.M880I 0.19 deleterious(0) probably_damaging(0.981) TCGA-DA-A3F8-06 3 97619322 97619322 C T CRYBG3 Missense_Mutation p.P718L 0.19 tolerated(0.05) benign(0.104) TCGA-DA-A3F8-06 3 97806295 97806295 G A OR5AC2 Missense_Mutation p.M93I 0.20 tolerated(0.22) benign(0.004) TCGA-DA-A3F8-06 3 97806481 97806481 C T OR5AC2 Silent p.F155F 0.17 TCGA-DA-A3F8-06 3 97887907 97887907 C T OR5H15 Missense_Mutation p.R122C 0.14 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F8-06 3 97888463 97888463 G A OR5H15 Missense_Mutation p.R307K 0.25 tolerated(1) benign(0.003) TCGA-DA-A3F8-06 4 100208142 100208142 C T ADH1A Missense_Mutation p.V42M 0.13 tolerated(0.06) benign(0.143) TCGA-DA-A3F8-06 4 100334257 100334257 G A ADH7 3'UTR 0.19 TCGA-DA-A3F8-06 4 110763636 110763636 C T RRH Silent p.I244I 0.06 TCGA-DA-A3F8-06 4 114824382 114824382 C T ARSJ Missense_Mutation p.R283Q 0.26 tolerated(0.12) benign(0.305) TCGA-DA-A3F8-06 4 115585262 115585262 C T UGT8 Silent p.L312L 0.27 TCGA-DA-A3F8-06 4 115997456 115997456 G A NDST4 Missense_Mutation p.S246F 0.21 tolerated(0.18) benign(0.001) TCGA-DA-A3F8-06 4 115997949 115997949 G A NDST4 Missense_Mutation p.L82F 0.08 deleterious(0) possibly_damaging(0.661) TCGA-DA-A3F8-06 4 119810202 119810202 G A SYNPO2 Missense_Mutation p.G4E 0.17 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 4 120241838 120241838 C T FABP2 Missense_Mutation p.G76E 0.15 deleterious(0) possibly_damaging(0.888) TCGA-DA-A3F8-06 4 123542087 123542087 G A IL21 Missense_Mutation p.S27L 0.21 deleterious(0.01) possibly_damaging(0.57) TCGA-DA-A3F8-06 4 126315094 126315094 G A FAT4 Intron 0.20 TCGA-DA-A3F8-06 4 126371365 126371365 G A FAT4 Missense_Mutation p.G3065E 0.13 probably_damaging(1) TCGA-DA-A3F8-06 4 138442315 138442315 G A PCDH18 Silent p.I1092I 0.08 TCGA-DA-A3F8-06 4 140309273 140309273 C T NAA15 3'UTR 0.27 TCGA-DA-A3F8-06 4 141543298 141543298 A G TBC1D9 3'UTR 0.24 TCGA-DA-A3F8-06 4 147830293 147830293 C T TTC29 Silent p.R95R 0.12 TCGA-DA-A3F8-06 4 147830331 147830331 C T TTC29 Missense_Mutation p.E83K 0.17 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 4 154626057 154626057 C T TLR2 Silent p.F666F 0.09 TCGA-DA-A3F8-06 4 155157181 155157181 C T DCHS2 Missense_Mutation p.E2420K 0.20 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 4 155487105 155487105 G A FGB Missense_Mutation p.R87K 0.12 tolerated(0.4) benign(0.008) TCGA-DA-A3F8-06 4 156136186 156136186 C T NPY2R Silent p.V365V 0.13 TCGA-DA-A3F8-06 4 16258181 16258181 C T TAPT1-AS1 RNA 0.18 TCGA-DA-A3F8-06 4 164393411 164393411 C T TKTL2 Silent p.E492E 0.12 TCGA-DA-A3F8-06 4 167012436 167012436 C T TLL1 Missense_Mutation p.R867W 0.13 tolerated(0.06) possibly_damaging(0.832) TCGA-DA-A3F8-06 4 167675732 167675732 G A SPOCK3 Silent p.F289F 0.19 TCGA-DA-A3F8-06 4 169143005 169143005 G A DDX60 Missense_Mutation p.R1618C 0.14 tolerated(0.18) benign(0.001) TCGA-DA-A3F8-06 4 169374318 169374318 A T DDX60L Missense_Mutation p.I318N 0.08 deleterious(0) probably_damaging(0.95) TCGA-DA-A3F8-06 4 169632963 169632963 G A PALLD Missense_Mutation p.G618E 0.14 tolerated(0.2) benign(0.075) TCGA-DA-A3F8-06 4 176733203 176733203 G A GPM6A Intron 0.18 TCGA-DA-A3F8-06 4 177052800 177052800 C T WDR17 Missense_Mutation p.P361S 0.09 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 4 184190176 184190176 C T WWC2 Missense_Mutation p.R754C 0.09 tolerated(0.33) probably_damaging(0.973) TCGA-DA-A3F8-06 4 185038131 185038131 C T ENPP6 Missense_Mutation p.D245N 0.18 tolerated(0.13) probably_damaging(1) TCGA-DA-A3F8-06 4 185074732 185074732 C T ENPP6 Silent p.R132R 0.06 TCGA-DA-A3F8-06 4 189060749 189060749 G A TRIML1 Missense_Mutation p.E13K 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F8-06 4 20550128 20550128 G A SLIT2 Missense_Mutation p.R788K 0.09 tolerated(1) benign(0.032) TCGA-DA-A3F8-06 4 26483162 26483162 C T CCKAR 3'UTR 0.14 TCGA-DA-A3F8-06 4 40356150 40356150 C T CHRNA9 Silent p.V351V 0.10 TCGA-DA-A3F8-06 4 41648255 41648255 G A LIMCH1 Missense_Mutation p.R405Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 4 42965003 42965003 G A GRXCR1 Missense_Mutation p.R160K 0.21 tolerated(0.62) probably_damaging(0.994) TCGA-DA-A3F8-06 4 46066510 46066510 C T GABRG1 Silent p.Q191Q 0.10 TCGA-DA-A3F8-06 4 46125969 46125969 C T GABRG1 5'UTR 0.27 TCGA-DA-A3F8-06 4 46314596 46314596 C T GABRA2 Silent p.G131G 0.14 TCGA-DA-A3F8-06 4 48169925 48169925 C T TEC Missense_Mutation p.E181K 0.15 tolerated(0.65) benign(0.012) TCGA-DA-A3F8-06 4 48592750 48592750 G A FRYL Missense_Mutation p.P478L 0.10 deleterious(0) benign(0.291) TCGA-DA-A3F8-06 4 48996664 48996664 G A CWH43 Silent p.K180K 0.07 TCGA-DA-A3F8-06 4 52942971 52942971 C T SPATA18 Missense_Mutation p.P262L 0.08 deleterious(0.01) benign(0.222) TCGA-DA-A3F8-06 4 57181783 57181783 C T KIAA1211 Silent p.S705S 0.21 TCGA-DA-A3F8-06 4 5731072 5731072 C T EVC Silent p.F113F 0.16 TCGA-DA-A3F8-06 4 6473964 6473964 C T PPP2R2C 5'UTR 0.10 TCGA-DA-A3F8-06 4 6863241 6863241 C T KIAA0232 Missense_Mutation p.P378S 0.21 tolerated(0.37) benign(0.004) TCGA-DA-A3F8-06 4 69097044 69097044 C T TMPRSS11B Missense_Mutation p.G188E 0.19 deleterious(0) probably_damaging(0.992) TCGA-DA-A3F8-06 4 69100213 69100213 C T TMPRSS11B Nonsense_Mutation p.W146* 0.12 TCGA-DA-A3F8-06 4 69403366 69403366 C T UGT2B17 Missense_Mutation p.G524R 0.25 tolerated(0.13) benign(0.289) TCGA-DA-A3F8-06 4 69403518 69403518 C T UGT2B17 Missense_Mutation p.G473E 0.23 deleterious(0) probably_damaging(0.956) TCGA-DA-A3F8-06 4 69417586 69417586 G A UGT2B17 Missense_Mutation p.S350F 0.11 deleterious(0.01) benign(0.067) TCGA-DA-A3F8-06 4 69433930 69433930 C T UGT2B17 Missense_Mutation p.M91I 0.14 tolerated(0.22) benign(0.003) TCGA-DA-A3F8-06 4 70620463 70620463 C T SULT1B1 Missense_Mutation p.E68K 0.17 tolerated(0.07) benign(0.125) TCGA-DA-A3F8-06 4 71096951 71096951 G A FDCSP Missense_Mutation p.V14M 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-DA-A3F8-06 4 71200859 71200859 C T CABS1 Missense_Mutation p.P35S 0.16 tolerated(0.17) benign(0.068) TCGA-DA-A3F8-06 4 71509557 71509557 G A ENAM Missense_Mutation p.G805D 0.15 tolerated(0.07) benign(0.007) TCGA-DA-A3F8-06 4 76943932 76943932 T C CXCL10 Missense_Mutation p.S34G 0.19 tolerated(0.24) benign(0.08) TCGA-DA-A3F8-06 4 79284704 79284704 C T FRAS1 Silent p.L820L 0.33 TCGA-DA-A3F8-06 4 79300958 79300958 C T FRAS1 Missense_Mutation p.S1124F 0.10 benign(0.012) TCGA-DA-A3F8-06 4 80329203 80329203 C T GK2 Missense_Mutation p.G51E 0.09 deleterious(0.01) possibly_damaging(0.749) TCGA-DA-A3F8-06 4 81283950 81283950 G A C4orf22 Missense_Mutation p.G52R 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A3F8-06 4 83425749 83425749 G A TMEM150C Missense_Mutation p.S21L 0.13 tolerated(0.07) benign(0.138) TCGA-DA-A3F8-06 4 8456500 8456500 G A TRMT44 Missense_Mutation p.R388K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A3F8-06 4 8467274 8467274 C T TRMT44 Missense_Mutation p.P494S 0.16 deleterious(0) probably_damaging(0.995) TCGA-DA-A3F8-06 4 90169315 90169315 C T GPRIN3 Silent p.V649V 0.28 TCGA-DA-A3F8-06 4 9784493 9784493 C T DRD5 Silent p.P280P 0.25 TCGA-DA-A3F8-06 4 9784543 9784543 C T DRD5 Missense_Mutation p.T297I 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 4 99408034 99408034 C T TSPAN5 Missense_Mutation p.G45E 0.10 deleterious(0.02) probably_damaging(0.974) TCGA-DA-A3F8-06 4 99408035 99408035 C T TSPAN5 Missense_Mutation p.G45R 0.11 deleterious(0) possibly_damaging(0.872) TCGA-DA-A3F8-06 5 100147705 100147705 C T ST8SIA4 Missense_Mutation p.G309E 0.25 possibly_damaging(0.575) TCGA-DA-A3F8-06 5 100231369 100231369 G A ST8SIA4 Silent p.V78V 0.16 TCGA-DA-A3F8-06 5 110710584 110710584 C T CAMK4 Missense_Mutation p.L93F 0.17 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 5 11111118 11111118 G A CTNND2 Missense_Mutation p.S772L 0.15 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 5 111595675 111595675 C T EPB41L4A Missense_Mutation p.G215E 0.19 deleterious(0) probably_damaging(0.976) TCGA-DA-A3F8-06 5 111643179 111643179 C T EPB41L4A Silent p.T36T 0.27 TCGA-DA-A3F8-06 5 115335570 115335570 G A AQPEP Missense_Mutation p.E496K 0.23 tolerated(0.21) benign(0.049) TCGA-DA-A3F8-06 5 118860945 118860945 C T HSD17B4 Missense_Mutation p.P538L 0.21 deleterious(0.02) possibly_damaging(0.758) TCGA-DA-A3F8-06 5 127730909 127730909 G A FBN2 Silent p.L379L 0.20 TCGA-DA-A3F8-06 5 128862102 128862102 C T ADAMTS19 Missense_Mutation p.H341Y 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-DA-A3F8-06 5 128984583 128984583 G A ADAMTS19 Missense_Mutation p.R693K 0.16 deleterious(0.01) probably_damaging(0.952) TCGA-DA-A3F8-06 5 129240643 129240643 G A CHSY3 Missense_Mutation p.G41S 0.33 tolerated_low_confidence(0.37) benign(0.014) TCGA-DA-A3F8-06 5 129240644 129240644 G A CHSY3 Missense_Mutation p.G41D 0.31 tolerated_low_confidence(0.1) benign(0.088) TCGA-DA-A3F8-06 5 129520869 129520869 G A CHSY3 Silent p.Q678Q 0.24 TCGA-DA-A3F8-06 5 130791677 130791677 G A RAPGEF6 Missense_Mutation p.L965F 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 5 131398014 131398014 C T IL3 Missense_Mutation p.L72F 0.16 tolerated(0.17) probably_damaging(0.92) TCGA-DA-A3F8-06 5 131539494 131539494 G A P4HA2 Missense_Mutation p.R400C 0.09 deleterious(0.01) possibly_damaging(0.453) TCGA-DA-A3F8-06 5 13735385 13735385 G A DNAH5 Silent p.I3872I 0.17 TCGA-DA-A3F8-06 5 13753355 13753355 C T DNAH5 Missense_Mutation p.R3620Q 0.17 possibly_damaging(0.553) TCGA-DA-A3F8-06 5 137600047 137600047 C T GFRA3 Silent p.R94R 0.21 TCGA-DA-A3F8-06 5 13771045 13771045 C T DNAH5 Missense_Mutation p.E3140K 0.14 possibly_damaging(0.621) TCGA-DA-A3F8-06 5 13850880 13850880 G A DNAH5 Silent p.I1665I 0.17 TCGA-DA-A3F8-06 5 138651799 138651799 C T MATR3 Missense_Mutation p.P351S 0.11 tolerated(0.37) probably_damaging(0.986) TCGA-DA-A3F8-06 5 13900363 13900363 G A DNAH5 Silent p.S737S 0.09 TCGA-DA-A3F8-06 5 140038606 140038606 G A IK Missense_Mutation p.E345K 0.11 tolerated(0.31) benign(0.108) TCGA-DA-A3F8-06 5 140166202 140166202 C T PCDHA1 Silent p.I109I 0.14 TCGA-DA-A3F8-06 5 140183128 140183128 C T PCDHA3 Silent p.S782S 0.15 TCGA-DA-A3F8-06 5 140208028 140208028 C T PCDHA6 Missense_Mutation p.H118Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-DA-A3F8-06 5 140222919 140222919 G A PCDHA8 Silent p.E671E 0.17 TCGA-DA-A3F8-06 5 140236523 140236523 G A PCDHA10 Missense_Mutation p.R297K 0.18 tolerated_low_confidence(0.95) benign(0.004) TCGA-DA-A3F8-06 5 140250917 140250917 G A PCDHA11 Silent p.A743A 0.20 TCGA-DA-A3F8-06 5 140516566 140516566 C T PCDHB5 Missense_Mutation p.S517L 0.15 deleterious_low_confidence(0) benign(0.169) TCGA-DA-A3F8-06 5 140529985 140529985 G A PCDHB6 Silent p.K49K 0.13 TCGA-DA-A3F8-06 5 140572902 140572902 C T PCDHB10 Silent p.F259F 0.10 TCGA-DA-A3F8-06 5 140626592 140626592 C T PCDHB15 Silent p.T482T 0.19 TCGA-DA-A3F8-06 5 140627416 140627416 G A PCDHB15 Missense_Mutation p.G757E 0.17 deleterious_low_confidence(0.03) benign(0.144) TCGA-DA-A3F8-06 5 140711728 140711728 G A PCDHGA1 Missense_Mutation p.E493K 0.16 deleterious_low_confidence(0.05) benign(0.33) TCGA-DA-A3F8-06 5 140712307 140712307 G A PCDHGA1 Missense_Mutation p.D686N 0.22 tolerated_low_confidence(0.11) benign(0.014) TCGA-DA-A3F8-06 5 140790067 140790067 C T PCDHGB6 Silent p.F766F 0.16 TCGA-DA-A3F8-06 5 140798931 140798931 C T PCDHGB7 Missense_Mutation p.S502L 0.20 tolerated(0.1) benign(0.021) TCGA-DA-A3F8-06 5 1420810 1420810 C T SLC6A3 Nonsense_Mutation p.W267* 0.29 TCGA-DA-A3F8-06 5 143586423 143586423 C T KCTD16 Missense_Mutation p.S49F 0.18 deleterious(0) possibly_damaging(0.845) TCGA-DA-A3F8-06 5 145239319 145239319 G A GRXCR2 Missense_Mutation p.P242S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A3F8-06 5 145435603 145435603 C T SH3RF2 Missense_Mutation p.S461F 0.16 deleterious(0) probably_damaging(0.966) TCGA-DA-A3F8-06 5 147449898 147449898 G A SPINK5 Missense_Mutation p.E32K 0.23 tolerated(0.16) benign(0.067) TCGA-DA-A3F8-06 5 14756009 14756009 G A ANKH Silent p.F159F 0.14 TCGA-DA-A3F8-06 5 149749138 149749138 C T TCOF1 Silent p.S204S 0.20 TCGA-DA-A3F8-06 5 150310686 150310686 C T ZNF300P1 RNA 0.13 TCGA-DA-A3F8-06 5 150519721 150519721 C T ANXA6 Silent p.K34K 0.21 TCGA-DA-A3F8-06 5 150867796 150867796 C T SLC36A1 Missense_Mutation p.S471F 0.12 deleterious(0.01) benign(0.439) TCGA-DA-A3F8-06 5 153149817 153149817 G A GRIA1 Missense_Mutation p.M714I 0.18 tolerated(0.57) benign(0.042) TCGA-DA-A3F8-06 5 154393562 154393562 C T KIF4B Missense_Mutation p.S48F 0.17 deleterious(0) possibly_damaging(0.74) TCGA-DA-A3F8-06 5 156514297 156514297 G A HAVCR2 Missense_Mutation p.S241F 0.15 tolerated(0.11) possibly_damaging(0.45) TCGA-DA-A3F8-06 5 156738751 156738751 C T CYFIP2 Missense_Mutation p.R332C 0.18 deleterious(0.01) possibly_damaging(0.676) TCGA-DA-A3F8-06 5 158250200 158250200 G A EBF1 Silent p.P254P 0.13 TCGA-DA-A3F8-06 5 16701236 16701236 C T MYO10 Missense_Mutation p.D1090N 0.25 deleterious_low_confidence(0.02) benign(0.001) TCGA-DA-A3F8-06 5 168244354 168244354 C T SLIT3 Silent p.L248L 0.23 TCGA-DA-A3F8-06 5 168310283 168310283 C T SLIT3 Missense_Mutation p.D158N 0.21 tolerated(0.08) benign(0.013) TCGA-DA-A3F8-06 5 169446040 169446040 C T DOCK2 Silent p.L1103L 0.19 TCGA-DA-A3F8-06 5 169494534 169494534 G A DOCK2 Silent p.E1496E 0.17 TCGA-DA-A3F8-06 5 170147352 170147352 G A KCNIP1 Missense_Mutation p.D83N 0.28 deleterious(0.04) benign(0.218) TCGA-DA-A3F8-06 5 170239211 170239211 G A GABRP Silent p.L424L 0.15 TCGA-DA-A3F8-06 5 176022678 176022678 G A CDHR2 3'UTR 0.19 TCGA-DA-A3F8-06 5 176859235 176859235 C T GRK6 Missense_Mutation p.A88V 0.11 tolerated(0.18) benign(0.013) TCGA-DA-A3F8-06 5 176859236 176859236 C T GRK6 Silent p.A88A 0.11 TCGA-DA-A3F8-06 5 177665611 177665611 G A COL23A1 3'UTR 0.21 TCGA-DA-A3F8-06 5 178199573 178199573 C T AACSP1 RNA 0.11 TCGA-DA-A3F8-06 5 178310557 178310557 C T ZNF354B Silent p.S368S 0.14 TCGA-DA-A3F8-06 5 194890 194890 T C LRRC14B Missense_Mutation p.F323L 0.12 deleterious(0.01) benign(0.167) TCGA-DA-A3F8-06 5 19520868 19520868 G A CDH18 Silent p.S470S 0.18 TCGA-DA-A3F8-06 5 24492984 24492984 C T CDH10 Silent p.Q522Q 0.17 TCGA-DA-A3F8-06 5 2755204 2755204 G A C5orf38 3'UTR 0.18 TCGA-DA-A3F8-06 5 31267601 31267601 C T CDH6 Silent p.F7F 0.18 TCGA-DA-A3F8-06 5 32088003 32088003 G A PDZD2 Silent p.P1483P 0.16 TCGA-DA-A3F8-06 5 33576790 33576790 G A ADAMTS12 Missense_Mutation p.T1114I 0.20 tolerated(0.07) benign(0.02) TCGA-DA-A3F8-06 5 34915034 34915034 G A RAD1 5'UTR 0.22 TCGA-DA-A3F8-06 5 36049429 36049429 C T UGT3A2 Silent p.K135K 0.13 TCGA-DA-A3F8-06 5 39341279 39341279 C T C9 Missense_Mutation p.E149K 0.19 tolerated(0.15) possibly_damaging(0.542) TCGA-DA-A3F8-06 5 40972562 40972562 C T C7 Missense_Mutation p.P647L 0.13 tolerated(0.18) benign(0.033) TCGA-DA-A3F8-06 5 41143032 41143032 C T C6 Missense_Mutation p.M900I 0.17 tolerated(0.44) benign(0.001) TCGA-DA-A3F8-06 5 41181595 41181595 C T C6 Missense_Mutation p.E265K 0.08 tolerated(0.83) benign(0) TCGA-DA-A3F8-06 5 41850282 41850282 C T OXCT1 Splice_Site p.X139_splice 0.07 TCGA-DA-A3F8-06 5 49699201 49699201 C T EMB Missense_Mutation p.E230K 0.23 tolerated(0.15) benign(0.173) TCGA-DA-A3F8-06 5 49706744 49706744 C T EMB Missense_Mutation p.E147K 0.15 tolerated(0.38) benign(0.015) TCGA-DA-A3F8-06 5 54326371 54326371 G A GZMK Missense_Mutation p.V108I 0.16 deleterious(0.03) benign(0) TCGA-DA-A3F8-06 5 55088501 55088501 G A DDX4 Silent p.L445L 0.12 TCGA-DA-A3F8-06 5 64814402 64814402 G C CENPK Missense_Mutation p.S237C 0.21 deleterious(0.01) benign(0.376) TCGA-DA-A3F8-06 5 66460533 66460533 T A MAST4 Silent p.V1842V 0.25 TCGA-DA-A3F8-06 5 70671794 70671794 G A RP11-136K7.2 Intron 0.17 TCGA-DA-A3F8-06 5 79351631 79351631 G A THBS4 Missense_Mutation p.D106N 0.15 tolerated(0.1) probably_damaging(0.986) TCGA-DA-A3F8-06 5 79617099 79617099 G A SPZ1 Silent p.Q355Q 0.15 TCGA-DA-A3F8-06 5 80057441 80057441 C T MSH3 Missense_Mutation p.H614Y 0.19 tolerated(0.94) benign(0.024) TCGA-DA-A3F8-06 5 80604378 80604378 A G ZCCHC9 Splice_Site p.X129_splice 0.18 TCGA-DA-A3F8-06 5 82400778 82400778 C G XRCC4 Missense_Mutation p.P14A 0.12 deleterious(0.02) benign(0) TCGA-DA-A3F8-06 5 96232463 96232463 G A ERAP2 Missense_Mutation p.D467N 0.16 tolerated(0.26) benign(0.026) TCGA-DA-A3F8-06 5 96315306 96315306 C T LNPEP Missense_Mutation p.P162S 0.14 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 5 96358092 96358092 C T LNPEP Missense_Mutation p.A822V 0.26 tolerated(0.35) benign(0.007) TCGA-DA-A3F8-06 6 102124506 102124506 C T GRIK2 Missense_Mutation p.R184C 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 6 106543594 106543594 G A PRDM1 Silent p.R132R 0.38 TCGA-DA-A3F8-06 6 106967944 106967944 T C AIM1 Missense_Mutation p.L546P 0.19 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-DA-A3F8-06 6 111696200 111696200 G A REV3L Missense_Mutation p.P1120S 0.09 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 6 116833295 116833295 C T FAM26E Missense_Mutation p.P146S 0.10 tolerated(1) benign(0.006) TCGA-DA-A3F8-06 6 117130604 117130604 C T GPRC6A Missense_Mutation p.R124K 0.08 tolerated(0.56) benign(0.004) TCGA-DA-A3F8-06 6 117245927 117245927 T G RFX6 Missense_Mutation p.L551V 0.08 tolerated(0.07) possibly_damaging(0.642) TCGA-DA-A3F8-06 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.14 unknown(0) TCGA-DA-A3F8-06 6 130762176 130762176 G A TMEM200A Silent p.S203S 0.14 TCGA-DA-A3F8-06 6 131216217 131216217 C T EPB41L2 Missense_Mutation p.G427R 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 6 133013597 133013597 G A VNN1 Missense_Mutation p.S318F 0.11 deleterious(0.02) possibly_damaging(0.794) TCGA-DA-A3F8-06 6 134210647 134210647 A C TCF21 Missense_Mutation p.T38P 0.13 tolerated(0.13) benign(0.027) TCGA-DA-A3F8-06 6 136512841 136512841 C T PDE7B Missense_Mutation p.L406F 0.09 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 6 136562768 136562768 G A MTFR2 Missense_Mutation p.P110S 0.11 tolerated(0.21) benign(0.05) TCGA-DA-A3F8-06 6 136677832 136677832 C T MAP7 Silent p.E693E 0.14 TCGA-DA-A3F8-06 6 136687111 136687111 C T MAP7 Silent p.P367P 0.17 TCGA-DA-A3F8-06 6 143660928 143660928 C T AIG1 3'UTR 0.40 TCGA-DA-A3F8-06 6 150322324 150322324 C T RAET1K RNA 0.20 TCGA-DA-A3F8-06 6 153043126 153043126 C T MYCT1 Missense_Mutation p.S149F 0.20 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 6 155451411 155451411 C T TIAM2 Nonsense_Mutation p.Q352* 0.17 TCGA-DA-A3F8-06 6 159692398 159692398 G A FNDC1 Missense_Mutation p.G1870E 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 6 160829906 160829906 C T SLC22A3 Silent p.I270I 0.28 TCGA-DA-A3F8-06 6 163876429 163876429 T A QKI Nonsense_Mutation p.Y87* 0.20 TCGA-DA-A3F8-06 6 168467485 168467485 G A FRMD1 Silent p.F137F 0.11 TCGA-DA-A3F8-06 6 169008849 169008849 G A SMOC2 Silent p.P290P 0.18 TCGA-DA-A3F8-06 6 24448181 24448181 G A GPLD1 Silent p.S534S 0.28 TCGA-DA-A3F8-06 6 28056508 28056508 G A ZNF165 Missense_Mutation p.E240K 0.17 tolerated(0.78) benign(0.051) TCGA-DA-A3F8-06 6 28269969 28269969 G A PGBD1 Missense_Mutation p.A780T 0.15 tolerated(0.56) benign(0.005) TCGA-DA-A3F8-06 6 2890586 2890586 G A SERPINB9 Silent p.F314F 0.20 TCGA-DA-A3F8-06 6 29055023 29055023 C T OR2B3 Translation_Start_Site p.M1? 0.23 deleterious(0.01) possibly_damaging(0.818) TCGA-DA-A3F8-06 6 29080470 29080470 G A OR2J3 Missense_Mutation p.G268E 0.28 tolerated(0.23) benign(0.011) TCGA-DA-A3F8-06 6 29274703 29274703 C T OR14J1 Silent p.S79S 0.18 TCGA-DA-A3F8-06 6 29408171 29408171 G A OR10C1 Missense_Mutation p.E127K 0.15 tolerated(0.21) benign(0) TCGA-DA-A3F8-06 6 29429564 29429564 C T OR2H1 Silent p.S6S 0.18 TCGA-DA-A3F8-06 6 29627396 29627396 G A MOG Missense_Mutation p.R130Q 0.19 tolerated(0.92) benign(0.261) TCGA-DA-A3F8-06 6 31110293 31110293 G A CCHCR1 3'UTR 0.25 TCGA-DA-A3F8-06 6 31382901 31382901 C T MICA 3'UTR 0.26 TCGA-DA-A3F8-06 6 31550180 31550180 C T LTB Silent p.G5G 0.24 TCGA-DA-A3F8-06 6 31759515 31759515 C T VARS Splice_Site p.X325_splice 0.12 TCGA-DA-A3F8-06 6 31832678 31832678 G A SLC44A4 Missense_Mutation p.S614F 0.08 deleterious(0) benign(0.363) TCGA-DA-A3F8-06 6 31895563 31895563 T C CFB Missense_Mutation p.F12L 0.18 tolerated(1) benign(0) TCGA-DA-A3F8-06 6 32169252 32169252 C T NOTCH4 Missense_Mutation p.D1261N 0.11 deleterious(0) possibly_damaging(0.825) TCGA-DA-A3F8-06 6 32170021 32170021 C T NOTCH4 Missense_Mutation p.G1196E 0.13 tolerated(0.07) benign(0.303) TCGA-DA-A3F8-06 6 32170060 32170060 C T NOTCH4 Missense_Mutation p.G1183E 0.15 deleterious(0.02) probably_damaging(1) TCGA-DA-A3F8-06 6 33138617 33138617 G A COL11A2 Silent p.F1062F 0.04 TCGA-DA-A3F8-06 6 33284382 33284382 G A ZBTB22 Silent p.A104A 0.18 TCGA-DA-A3F8-06 6 35289109 35289109 C T DEF6 Silent p.S606S 0.19 TCGA-DA-A3F8-06 6 36438023 36438023 C T KCTD20 Missense_Mutation p.P50L 0.19 tolerated_low_confidence(0.08) benign(0) TCGA-DA-A3F8-06 6 36483234 36483234 G A STK38 Silent p.L184L 0.20 TCGA-DA-A3F8-06 6 36759834 36759834 G A CPNE5 Silent p.S168S 0.20 TCGA-DA-A3F8-06 6 37606323 37606323 C T MDGA1 Missense_Mutation p.G886E 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-DA-A3F8-06 6 38783249 38783249 G A DNAH8 Missense_Mutation p.M896I 0.07 benign(0.001) TCGA-DA-A3F8-06 6 38820524 38820524 G A DNAH8 Missense_Mutation p.D1624N 0.14 benign(0.029) TCGA-DA-A3F8-06 6 38906603 38906603 G A DNAH8 Missense_Mutation p.R3732K 0.17 probably_damaging(0.997) TCGA-DA-A3F8-06 6 39162039 39162039 G A KCNK5 Silent p.F180F 0.17 TCGA-DA-A3F8-06 6 39282876 39282876 C T KCNK16 3'UTR 0.11 TCGA-DA-A3F8-06 6 401567 401567 G A IRF4 Missense_Mutation p.D297N 0.08 tolerated(0.35) possibly_damaging(0.794) TCGA-DA-A3F8-06 6 42893421 42893421 G A PTCRA 3'UTR 0.28 TCGA-DA-A3F8-06 6 43400951 43400951 C T ABCC10 Silent p.T411T 0.17 TCGA-DA-A3F8-06 6 43418978 43418978 C T DLK2 Missense_Mutation p.D151N 0.14 tolerated(0.39) benign(0.001) TCGA-DA-A3F8-06 6 52051236 52051236 C T IL17A Missense_Mutation p.P3S 0.15 tolerated_low_confidence(0.25) possibly_damaging(0.5) TCGA-DA-A3F8-06 6 52317558 52317558 C T EFHC1 Nonsense_Mutation p.R216* 0.11 TCGA-DA-A3F8-06 6 52992948 52992948 C T GCM1 3'UTR 0.12 TCGA-DA-A3F8-06 6 55939081 55939081 A T COL21A1 Silent p.G638G 0.11 TCGA-DA-A3F8-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.18 deleterious(0.02) benign(0.201) TCGA-DA-A3F8-06 6 56373515 56373515 C T DST Missense_Mutation p.E3728K 0.12 benign(0.087) TCGA-DA-A3F8-06 6 6145795 6145795 C T F13A1 3'UTR 0.19 TCGA-DA-A3F8-06 6 62757842 62757842 C T KHDRBS2 Missense_Mutation p.E93K 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-DA-A3F8-06 6 63990527 63990527 T A LGSN Missense_Mutation p.D310V 0.25 deleterious(0) benign(0.005) TCGA-DA-A3F8-06 6 64004951 64004951 C T LGSN Splice_Site p.X11_splice 0.10 TCGA-DA-A3F8-06 6 70070838 70070838 G A BAI3 Missense_Mutation p.E1225K 0.23 deleterious(0.03) probably_damaging(0.98) TCGA-DA-A3F8-06 6 70916638 70916638 C T COL19A1 Missense_Mutation p.P1086L 0.08 tolerated(0.11) possibly_damaging(0.895) TCGA-DA-A3F8-06 6 70935696 70935696 C T COL9A1 Silent p.K840K 0.20 TCGA-DA-A3F8-06 6 74229188 74229188 C T EEF1A1 Missense_Mutation p.E66K 0.17 deleterious_low_confidence(0.03) benign(0.109) TCGA-DA-A3F8-06 6 7583323 7583323 G A DSP Missense_Mutation p.R1943K 0.16 benign(0) TCGA-DA-A3F8-06 6 84371276 84371276 C T SNAP91 Missense_Mutation p.E133K 0.14 deleterious(0.02) unknown(0) TCGA-DA-A3F8-06 6 88767428 88767428 G A SPACA1 Missense_Mutation p.G122S 0.14 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 6 97246360 97246360 C T GPR63 Silent p.R416R 0.20 TCGA-DA-A3F8-06 7 100184200 100184200 G A FBXO24 5'Flank 0.11 TCGA-DA-A3F8-06 7 100187827 100187827 A G FBXO24 Missense_Mutation p.R95G 0.07 deleterious_low_confidence(0.01) benign(0.415) TCGA-DA-A3F8-06 7 100490864 100490864 G A ACHE Silent p.F330F 0.15 TCGA-DA-A3F8-06 7 100685682 100685682 C T MUC17 Missense_Mutation p.T3662I 0.12 benign(0.017) TCGA-DA-A3F8-06 7 100855617 100855617 C T PLOD3 Silent p.P348P 0.10 TCGA-DA-A3F8-06 7 102112964 102112964 G A LRWD1 Missense_Mutation p.R533Q 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A3F8-06 7 102574760 102574760 C T LRRC17 Missense_Mutation p.L134F 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 103029793 103029793 T C SLC26A5 Missense_Mutation p.T464A 0.12 tolerated(0.3) benign(0.325) TCGA-DA-A3F8-06 7 103162526 103162526 C T RELN Silent p.G2537G 0.11 TCGA-DA-A3F8-06 7 103162527 103162527 C T RELN Missense_Mutation p.G2537E 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 103230099 103230099 C T RELN Silent p.G1363G 0.10 TCGA-DA-A3F8-06 7 103244878 103244878 C T RELN Missense_Mutation p.E1021K 0.12 tolerated(0.36) possibly_damaging(0.837) TCGA-DA-A3F8-06 7 103338393 103338393 G A RELN Silent p.I350I 0.11 TCGA-DA-A3F8-06 7 107435018 107435018 C T SLC26A3 5'UTR 0.21 TCGA-DA-A3F8-06 7 110764323 110764323 A G LRRN3 Missense_Mutation p.T499A 0.11 tolerated(0.15) benign(0.338) TCGA-DA-A3F8-06 7 112724614 112724614 G A GPR85 Missense_Mutation p.P55S 0.08 deleterious(0.01) benign(0.326) TCGA-DA-A3F8-06 7 113559062 113559062 G A PPP1R3A 5'UTR 0.23 TCGA-DA-A3F8-06 7 116398635 116398635 C T MET Missense_Mutation p.P742L 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 117180273 117180273 G A CFTR Missense_Mutation p.G330E 0.09 deleterious(0.02) benign(0.032) TCGA-DA-A3F8-06 7 122635653 122635653 G A TAS2R16 Silent p.I12I 0.11 TCGA-DA-A3F8-06 7 123152189 123152189 G A IQUB Missense_Mutation p.S69L 0.14 tolerated_low_confidence(0.21) benign(0.003) TCGA-DA-A3F8-06 7 123264837 123264837 C T ASB15 Silent p.H222H 0.26 TCGA-DA-A3F8-06 7 123593980 123593980 C T SPAM1 Missense_Mutation p.S119F 0.14 tolerated(0.33) benign(0.056) TCGA-DA-A3F8-06 7 126542709 126542709 C T GRM8 Missense_Mutation p.R348Q 0.06 tolerated(0.19) possibly_damaging(0.86) TCGA-DA-A3F8-06 7 130021621 130021621 G A CPA1 Missense_Mutation p.E100K 0.09 deleterious(0.03) probably_damaging(0.947) TCGA-DA-A3F8-06 7 131831326 131831326 C T PLXNA4 Silent p.G1666G 0.15 TCGA-DA-A3F8-06 7 131831359 131831359 C T PLXNA4 Silent p.V1655V 0.07 TCGA-DA-A3F8-06 7 131912288 131912288 C T PLXNA4 Missense_Mutation p.D602N 0.07 tolerated(0.4) benign(0.009) TCGA-DA-A3F8-06 7 131912289 131912289 C T PLXNA4 Missense_Mutation p.M601I 0.07 tolerated(0.25) benign(0.003) TCGA-DA-A3F8-06 7 132192811 132192811 G A PLXNA4 Silent p.F214F 0.12 TCGA-DA-A3F8-06 7 132193002 132193002 C T PLXNA4 Missense_Mutation p.E151K 0.19 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 7 133827912 133827912 C T LRGUK Silent p.L195L 0.06 TCGA-DA-A3F8-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.08 TCGA-DA-A3F8-06 7 135378895 135378895 C T SLC13A4 Missense_Mutation p.G370R 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 137761356 137761356 C T AKR1D1 Missense_Mutation p.S31L 0.06 tolerated(0.2) benign(0.001) TCGA-DA-A3F8-06 7 137792289 137792289 A G AKR1D1 Missense_Mutation p.K273R 0.14 deleterious(0.02) benign(0.294) TCGA-DA-A3F8-06 7 138713577 138713577 G A ZC3HAV1L Missense_Mutation p.H211Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 7 139226793 139226793 G A CLEC2L Silent p.R153R 0.09 TCGA-DA-A3F8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-DA-A3F8-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.33 deleterious(0) possibly_damaging(0.838) TCGA-DA-A3F8-06 7 141673182 141673182 T C TAS2R38 Missense_Mutation p.N103S 0.08 tolerated(0.11) possibly_damaging(0.57) TCGA-DA-A3F8-06 7 141731583 141731583 G A MGAM Missense_Mutation p.G525E 0.12 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 7 141756627 141756627 C T MGAM Intron 0.15 TCGA-DA-A3F8-06 7 141797419 141797419 C T MGAM Silent p.F1677F 0.13 TCGA-DA-A3F8-06 7 141805639 141805639 G A MGAM Missense_Mutation p.R1841K 0.05 tolerated(0.54) benign(0) TCGA-DA-A3F8-06 7 142111427 142111427 C T TRBV5-7 Silent p.G103G 0.09 TCGA-DA-A3F8-06 7 142120283 142120283 G A TRBV7-7 Silent p.F13F 0.12 TCGA-DA-A3F8-06 7 142124537 142124537 G A TRBV6-8 Missense_Mutation p.A10V 0.10 tolerated(0.46) benign(0.026) TCGA-DA-A3F8-06 7 142149181 142149181 C T TRBV5-5 Silent p.L30L 0.14 TCGA-DA-A3F8-06 7 142168486 142168486 G A TRBV5-4 Silent p.F79F 0.11 TCGA-DA-A3F8-06 7 142168910 142168910 G A TRBV5-4 5'UTR 0.17 TCGA-DA-A3F8-06 7 142197691 142197691 C T TRBV11-2 RNA 0.09 TCGA-DA-A3F8-06 7 142224084 142224084 C T TRBV11-1 Missense_Mutation p.R28K 0.12 tolerated(0.19) benign(0.123) TCGA-DA-A3F8-06 7 142247180 142247180 G A TRBV7-3 Silent p.S92S 0.12 TCGA-DA-A3F8-06 7 142478857 142478857 C T PRSS3P2 RNA 0.16 TCGA-DA-A3F8-06 7 142565796 142565796 G A EPHB6 Missense_Mutation p.S636N 0.15 tolerated(0.48) benign(0.005) TCGA-DA-A3F8-06 7 142575760 142575760 G A TRPV6 Missense_Mutation p.L50F 0.20 tolerated(0.53) possibly_damaging(0.649) TCGA-DA-A3F8-06 7 142640047 142640047 G A KEL Missense_Mutation p.P619L 0.15 tolerated(0.17) benign(0.02) TCGA-DA-A3F8-06 7 142723868 142723868 G A OR9A2 Missense_Mutation p.R118C 0.42 tolerated(0.05) benign(0.117) TCGA-DA-A3F8-06 7 142724186 142724186 G A OR9A2 Missense_Mutation p.H12Y 0.19 tolerated(0.51) benign(0) TCGA-DA-A3F8-06 7 142750118 142750118 C T OR6V1 Silent p.P227P 0.13 TCGA-DA-A3F8-06 7 142750145 142750145 C T OR6V1 Silent p.F236F 0.06 TCGA-DA-A3F8-06 7 142880600 142880600 C T TAS2R39 Missense_Mutation p.S30L 0.13 tolerated(0.29) benign(0.09) TCGA-DA-A3F8-06 7 142880680 142880680 G A TAS2R39 Missense_Mutation p.A57T 0.15 deleterious(0.05) possibly_damaging(0.461) TCGA-DA-A3F8-06 7 142881207 142881207 C T TAS2R39 Silent p.I232I 0.17 TCGA-DA-A3F8-06 7 142919219 142919219 C T AC073342.1 Missense_Mutation p.E48K 0.09 benign(0) TCGA-DA-A3F8-06 7 142919729 142919729 C T TAS2R40 Silent p.F186F 0.16 TCGA-DA-A3F8-06 7 143085406 143085406 C T ZYX Missense_Mutation p.P373L 0.17 deleterious(0) probably_damaging(0.974) TCGA-DA-A3F8-06 7 143140577 143140577 C T TAS2R60 Missense_Mutation p.S11L 0.14 tolerated(0.88) benign(0) TCGA-DA-A3F8-06 7 143632402 143632402 C T OR2F2 Missense_Mutation p.S26F 0.13 tolerated(0.73) benign(0.001) TCGA-DA-A3F8-06 7 143807206 143807206 C T OR2A2 Silent p.F177F 0.16 TCGA-DA-A3F8-06 7 146536847 146536847 C T CNTNAP2 Missense_Mutation p.L85F 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A3F8-06 7 148080965 148080965 G A CNTNAP2 Missense_Mutation p.D1234N 0.27 tolerated(0.21) benign(0.005) TCGA-DA-A3F8-06 7 148876608 148876608 C T ZNF398 Silent p.F548F 0.08 TCGA-DA-A3F8-06 7 148964272 148964272 G A ZNF783 Missense_Mutation p.G211E 0.14 tolerated(0.68) benign(0.002) TCGA-DA-A3F8-06 7 149479387 149479387 G A SSPO Intron 0.22 TCGA-DA-A3F8-06 7 149490454 149490454 G A SSPO RNA 0.09 TCGA-DA-A3F8-06 7 149503132 149503132 C G SSPO RNA 0.11 TCGA-DA-A3F8-06 7 149543252 149543252 C T ZNF862 Missense_Mutation p.A50V 0.10 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-DA-A3F8-06 7 149576474 149576474 C T ATP6V0E2 Missense_Mutation p.S117L 0.13 tolerated_low_confidence(1) possibly_damaging(0.602) TCGA-DA-A3F8-06 7 150164198 150164198 G A GIMAP8 Missense_Mutation p.D138N 0.10 tolerated(0.09) benign(0.202) TCGA-DA-A3F8-06 7 150217651 150217651 G A GIMAP7 Missense_Mutation p.E197K 0.11 tolerated(0.24) benign(0.009) TCGA-DA-A3F8-06 7 150493504 150493504 C A TMEM176B Missense_Mutation p.D52Y 0.17 deleterious(0.02) possibly_damaging(0.708) TCGA-DA-A3F8-06 7 150493505 150493505 C T TMEM176B Silent p.G51G 0.17 TCGA-DA-A3F8-06 7 150649923 150649923 C G KCNH2 Missense_Mutation p.D383H 0.06 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 7 150931317 150931317 C T CHPF2 Missense_Mutation p.P74S 0.17 deleterious(0.01) possibly_damaging(0.627) TCGA-DA-A3F8-06 7 152345844 152345844 G A XRCC2 Silent p.S242S 0.14 TCGA-DA-A3F8-06 7 154876077 154876077 C T HTR5A Silent p.I318I 0.15 TCGA-DA-A3F8-06 7 157926687 157926687 C T PTPRN2 Missense_Mutation p.G413E 0.19 tolerated(0.51) benign(0.004) TCGA-DA-A3F8-06 7 20698722 20698722 A C ABCB5 Intron 0.15 TCGA-DA-A3F8-06 7 23792410 23792410 G A STK31 Missense_Mutation p.M364I 0.09 tolerated(0.26) benign(0.025) TCGA-DA-A3F8-06 7 27282763 27282763 G A EVX1 Silent p.P38P 0.33 TCGA-DA-A3F8-06 7 28610022 28610022 G A CREB5 Missense_Mutation p.G111R 0.11 tolerated(0.64) possibly_damaging(0.905) TCGA-DA-A3F8-06 7 2962271 2962271 C T CARD11 Missense_Mutation p.E756K 0.24 tolerated(0.05) benign(0.197) TCGA-DA-A3F8-06 7 31378112 31378112 T A NEUROD6 Missense_Mutation p.E257D 0.30 tolerated(1) possibly_damaging(0.874) TCGA-DA-A3F8-06 7 31918727 31918727 G A PDE1C Nonsense_Mutation p.R163* 0.10 TCGA-DA-A3F8-06 7 33427661 33427661 C T BBS9 Missense_Mutation p.R674W 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 7 34192701 34192701 C T BMPER Intron 0.20 TCGA-DA-A3F8-06 7 38725335 38725335 C T FAM183B Missense_Mutation p.E91K 0.22 deleterious(0.02) possibly_damaging(0.533) TCGA-DA-A3F8-06 7 4281441 4281441 C T SDK1 Silent p.T2049T 0.20 TCGA-DA-A3F8-06 7 44555703 44555703 T C NPC1L1 Missense_Mutation p.T1232A 0.12 tolerated(0.09) probably_damaging(0.973) TCGA-DA-A3F8-06 7 44555716 44555716 C T NPC1L1 Silent p.R1227R 0.32 TCGA-DA-A3F8-06 7 44805791 44805791 C T ZMIZ2 Silent p.F757F 0.07 TCGA-DA-A3F8-06 7 45699774 45699774 C T ADCY1 Missense_Mutation p.R481C 0.19 deleterious(0) possibly_damaging(0.88) TCGA-DA-A3F8-06 7 48411914 48411914 C T ABCA13 Silent p.F3651F 0.08 TCGA-DA-A3F8-06 7 50468045 50468045 C T IKZF1 Missense_Mutation p.S385L 0.08 tolerated(0.52) benign(0.004) TCGA-DA-A3F8-06 7 5967999 5967999 G A RSPH10B Nonsense_Mutation p.R754* 0.07 TCGA-DA-A3F8-06 7 63726636 63726636 G A ZNF679 Missense_Mutation p.E209K 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-DA-A3F8-06 7 65445369 65445369 G A GUSB Missense_Mutation p.P80S 0.13 deleterious(0) probably_damaging(0.923) TCGA-DA-A3F8-06 7 70598008 70598008 G A WBSCR17 Missense_Mutation p.V74M 0.21 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DA-A3F8-06 7 72040539 72040539 G A TYW1B Missense_Mutation p.P277S 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 72683332 72683332 C T GTF2IRD2P1 RNA 0.05 TCGA-DA-A3F8-06 7 76889522 76889522 A C CCDC146 Silent p.R319R 0.14 TCGA-DA-A3F8-06 7 77764489 77764489 C T MAGI2 Silent p.G960G 0.13 TCGA-DA-A3F8-06 7 77973175 77973175 C T MAGI2 Missense_Mutation p.G443E 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 7 82474594 82474594 C T PCLO Missense_Mutation p.S4680N 0.09 unknown(0) TCGA-DA-A3F8-06 7 82538283 82538283 C T PCLO Silent p.R4449R 0.06 TCGA-DA-A3F8-06 7 82580167 82580167 C T PCLO Missense_Mutation p.R3246Q 0.07 unknown(0) TCGA-DA-A3F8-06 7 82584275 82584275 C T PCLO Silent p.Q1998Q 0.08 TCGA-DA-A3F8-06 7 82586199 82586199 G A PCLO Missense_Mutation p.P1357L 0.20 unknown(0) TCGA-DA-A3F8-06 7 82595376 82595376 G A PCLO Missense_Mutation p.P1243L 0.15 unknown(0) TCGA-DA-A3F8-06 7 83029535 83029535 C T SEMA3E Missense_Mutation p.G392E 0.07 tolerated(0.36) benign(0.009) TCGA-DA-A3F8-06 7 86394693 86394693 G A GRM3 Missense_Mutation p.E78K 0.12 tolerated(0.27) benign(0.037) TCGA-DA-A3F8-06 7 86820320 86820320 C T DMTF1 Silent p.L491L 0.09 TCGA-DA-A3F8-06 7 87913314 87913314 C T STEAP4 Missense_Mutation p.E91K 0.37 tolerated(0.5) benign(0.009) TCGA-DA-A3F8-06 7 88963320 88963320 G A ZNF804B Missense_Mutation p.E342K 0.13 deleterious(0.01) benign(0.388) TCGA-DA-A3F8-06 7 88963433 88963433 G A ZNF804B Silent p.R379R 0.14 TCGA-DA-A3F8-06 7 88965860 88965860 C T ZNF804B Silent p.A1188A 0.14 TCGA-DA-A3F8-06 7 91864912 91864912 G A KRIT1 Silent p.F178F 0.07 TCGA-DA-A3F8-06 7 92158808 92158808 G A RBM48 Missense_Mutation p.E44K 0.14 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 7 92762533 92762533 C T SAMD9L Missense_Mutation p.E918K 0.12 tolerated(0.14) benign(0.209) TCGA-DA-A3F8-06 7 94035563 94035563 G A COL1A2 Missense_Mutation p.G181E 0.10 unknown(0) TCGA-DA-A3F8-06 7 94993240 94993240 C T PON3 Silent p.R210R 0.11 TCGA-DA-A3F8-06 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.44 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 7 98508852 98508852 C T TRRAP Silent p.V655V 0.14 TCGA-DA-A3F8-06 7 98574593 98574593 C T TRRAP Missense_Mutation p.S2753F 0.07 possibly_damaging(0.474) TCGA-DA-A3F8-06 7 99063769 99063769 G A ATP5J2 5'UTR 0.06 TCGA-DA-A3F8-06 7 99447299 99447299 C T CYP3A43 Missense_Mutation p.P218S 0.11 deleterious(0.01) benign(0.306) TCGA-DA-A3F8-06 7 99474348 99474348 G A OR2AE1 Silent p.L103L 0.13 TCGA-DA-A3F8-06 7 99565827 99565827 C T AZGP1 Silent p.A188A 0.11 TCGA-DA-A3F8-06 8 100133467 100133469 TAT CA VPS13B Frame_Shift_Del p.Y334Hfs*24 0.15 TCGA-DA-A3F8-06 8 100733174 100733174 C T VPS13B Missense_Mutation p.P2342S 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-DA-A3F8-06 8 102585978 102585978 G A GRHL2 Missense_Mutation p.G273R 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 8 104955088 104955088 C T RIMS2 Missense_Mutation p.P879S 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A3F8-06 8 105459605 105459605 C T DPYS Missense_Mutation p.E184K 0.15 tolerated(0.14) benign(0.17) TCGA-DA-A3F8-06 8 110509206 110509206 G A PKHD1L1 Silent p.G3462G 0.22 TCGA-DA-A3F8-06 8 120114598 120114598 G A COLEC10 Missense_Mutation p.E102K 0.14 tolerated(0.18) benign(0.124) TCGA-DA-A3F8-06 8 133152354 133152354 G A KCNQ3 Missense_Mutation p.P513S 0.18 deleterious(0.05) probably_damaging(1) TCGA-DA-A3F8-06 8 133919138 133919138 C T TG Silent p.A1280A 0.10 TCGA-DA-A3F8-06 8 134296497 134296498 CT - NDRG1 Frame_Shift_Del p.E21Dfs*10 0.23 TCGA-DA-A3F8-06 8 139153542 139153542 C T FAM135B Missense_Mutation p.R1230Q 0.17 deleterious(0) probably_damaging(0.987) TCGA-DA-A3F8-06 8 139164989 139164989 C T FAM135B Missense_Mutation p.E577K 0.17 deleterious(0.01) possibly_damaging(0.587) TCGA-DA-A3F8-06 8 139674277 139674277 C T COL22A1 Missense_Mutation p.R1079Q 0.18 unknown(0) TCGA-DA-A3F8-06 8 142366972 142366972 G A GPR20 Missense_Mutation p.A351V 0.20 tolerated_low_confidence(0.09) benign(0.008) TCGA-DA-A3F8-06 8 143998579 143998579 C T CYP11B2 Silent p.V97V 0.20 TCGA-DA-A3F8-06 8 17198902 17198902 G T MTMR7 Missense_Mutation p.D234E 0.14 tolerated(0.49) benign(0.13) TCGA-DA-A3F8-06 8 21844746 21844746 C T XPO7 Missense_Mutation p.R558C 0.14 deleterious(0.05) possibly_damaging(0.516) TCGA-DA-A3F8-06 8 24358356 24358356 C T ADAM7 Missense_Mutation p.L686F 0.11 deleterious(0.01) benign(0.045) TCGA-DA-A3F8-06 8 2813252 2813252 C T CSMD1 Missense_Mutation p.D3285N 0.16 probably_damaging(0.999) TCGA-DA-A3F8-06 8 2830821 2830821 C T CSMD1 Missense_Mutation p.G2914E 0.20 probably_damaging(0.999) TCGA-DA-A3F8-06 8 2876151 2876151 G A CSMD1 Missense_Mutation p.S2626F 0.18 possibly_damaging(0.718) TCGA-DA-A3F8-06 8 3263642 3263642 C T CSMD1 Missense_Mutation p.D725N 0.18 benign(0.356) TCGA-DA-A3F8-06 8 35647892 35647892 C T UNC5D Silent p.F891F 0.12 TCGA-DA-A3F8-06 8 36675228 36675228 C T KCNU1 Silent p.F352F 0.13 TCGA-DA-A3F8-06 8 38092070 38092070 C T DDHD2 Missense_Mutation p.P127S 0.22 deleterious(0) possibly_damaging(0.493) TCGA-DA-A3F8-06 8 39564406 39564406 G A ADAM18 Missense_Mutation p.G667E 0.11 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 8 41566326 41566326 C T ANK1 Silent p.S689S 0.18 TCGA-DA-A3F8-06 8 42586860 42586860 C T CHRNB3 Missense_Mutation p.S137L 0.17 deleterious(0.03) benign(0.061) TCGA-DA-A3F8-06 8 42587284 42587284 C T CHRNB3 Silent p.F278F 0.18 TCGA-DA-A3F8-06 8 54912521 54912521 G A TCEA1 Silent p.S72S 0.30 TCGA-DA-A3F8-06 8 55534779 55534779 C T RP1 Missense_Mutation p.P240S 0.23 tolerated(0.09) benign(0.125) TCGA-DA-A3F8-06 8 55538601 55538601 C T RP1 Missense_Mutation p.P720L 0.17 tolerated(0.12) benign(0.015) TCGA-DA-A3F8-06 8 55539604 55539604 G A RP1 Silent p.Q1054Q 0.16 TCGA-DA-A3F8-06 8 55539605 55539605 G A RP1 Missense_Mutation p.E1055K 0.16 tolerated(0.1) benign(0.027) TCGA-DA-A3F8-06 8 55540140 55540140 C T RP1 Missense_Mutation p.S1233F 0.19 tolerated(0.5) benign(0.002) TCGA-DA-A3F8-06 8 56725651 56725651 C T TGS1 Missense_Mutation p.L805F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 8 57079506 57079506 G A PLAG1 Missense_Mutation p.L267F 0.18 tolerated(0.71) benign(0.207) TCGA-DA-A3F8-06 8 57214079 57214079 T G SDR16C5 Missense_Mutation p.H297P 0.14 tolerated(0.1) benign(0.127) TCGA-DA-A3F8-06 8 57353902 57353902 C T PENK Missense_Mutation p.E245K 0.16 deleterious(0.03) benign(0.201) TCGA-DA-A3F8-06 8 57354053 57354053 C T PENK Silent p.K194K 0.15 TCGA-DA-A3F8-06 8 62289311 62289311 C T CLVS1 Silent p.I201I 0.19 TCGA-DA-A3F8-06 8 64098919 64098919 C T YTHDF3 Missense_Mutation p.P116L 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A3F8-06 8 65527628 65527628 G A CYP7B1 Missense_Mutation p.P338S 0.21 tolerated(0.56) benign(0.003) TCGA-DA-A3F8-06 8 65527679 65527679 C T CYP7B1 Missense_Mutation p.E321K 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 8 6728318 6728318 C T DEFB1 Missense_Mutation p.R31K 0.20 tolerated(0.19) benign(0.364) TCGA-DA-A3F8-06 8 68942750 68942750 C T PREX2 Missense_Mutation p.P188S 0.20 tolerated(0.05) possibly_damaging(0.864) TCGA-DA-A3F8-06 8 68942751 68942751 C T PREX2 Missense_Mutation p.P188L 0.19 deleterious(0.02) possibly_damaging(0.864) TCGA-DA-A3F8-06 8 69136817 69136817 G A PREX2 Silent p.A1577A 0.11 TCGA-DA-A3F8-06 8 73850087 73850087 T C KCNB2 Missense_Mutation p.C833R 0.24 tolerated_low_confidence(0.31) benign(0.439) TCGA-DA-A3F8-06 8 75761470 75761470 C T PI15 Silent p.Y253Y 0.20 TCGA-DA-A3F8-06 8 7698643 7698643 G A DEFB104A Missense_Mutation p.G49E 0.16 deleterious(0.05) probably_damaging(0.993) TCGA-DA-A3F8-06 8 77766843 77766843 G A ZFHX4 Silent p.Q2562Q 0.21 TCGA-DA-A3F8-06 8 77767078 77767078 G A ZFHX4 Missense_Mutation p.E2641K 0.15 probably_damaging(0.98) TCGA-DA-A3F8-06 8 87680323 87680323 C T CNGB3 Nonsense_Mutation p.W189* 0.20 TCGA-DA-A3F8-06 8 88249192 88249192 G A CNBD1 Missense_Mutation p.R208Q 0.22 tolerated(0.15) benign(0.264) TCGA-DA-A3F8-06 8 92406579 92406579 G A SLC26A7 3'UTR 0.14 TCGA-DA-A3F8-06 8 93003922 93003922 C T RUNX1T1 Silent p.R323R 0.20 TCGA-DA-A3F8-06 8 95392468 95392468 A G RAD54B Silent p.L718L 0.17 TCGA-DA-A3F8-06 9 100222560 100222560 C T TDRD7 Missense_Mutation p.S319F 0.14 tolerated(0.09) benign(0.004) TCGA-DA-A3F8-06 9 100995792 100995792 C T TBC1D2 Silent p.Q229Q 0.18 TCGA-DA-A3F8-06 9 101829329 101829329 C T COL15A1 Missense_Mutation p.L1273F 0.13 tolerated(0.05) probably_damaging(0.994) TCGA-DA-A3F8-06 9 103204553 103204553 C T MSANTD3 Silent p.I111I 0.21 TCGA-DA-A3F8-06 9 107267137 107267137 C T OR13F1 Silent p.I198I 0.18 TCGA-DA-A3F8-06 9 116153160 116153160 G A ALAD Silent p.I105I 0.10 TCGA-DA-A3F8-06 9 116346682 116346682 C T RGS3 Missense_Mutation p.S997F 0.12 tolerated(0.36) possibly_damaging(0.781) TCGA-DA-A3F8-06 9 117266558 117266558 G A DFNB31 Missense_Mutation p.S175F 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 9 117692581 117692581 C T TNFSF8 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DA-A3F8-06 9 117810784 117810784 G A TNC Missense_Mutation p.T1536I 0.16 tolerated(0.15) benign(0.126) TCGA-DA-A3F8-06 9 118950481 118950481 C A PAPPA Silent p.P488P 0.13 TCGA-DA-A3F8-06 9 118974082 118974082 G A PAPPA Missense_Mutation p.G597R 0.18 deleterious(0) probably_damaging(0.988) TCGA-DA-A3F8-06 9 119033603 119033603 G A PAPPA Splice_Site p.X954_splice 0.19 TCGA-DA-A3F8-06 9 119065038 119065038 G A PAPPA Missense_Mutation p.E986K 0.32 deleterious(0.01) benign(0.292) TCGA-DA-A3F8-06 9 119188292 119188292 G A ASTN2 Silent p.I1235I 0.16 TCGA-DA-A3F8-06 9 125273980 125273980 C T OR1J2 Silent p.A300A 0.19 TCGA-DA-A3F8-06 9 125486428 125486428 C T OR1L4 Missense_Mutation p.P54S 0.16 tolerated(1) benign(0.001) TCGA-DA-A3F8-06 9 126129486 126129486 G A CRB2 Missense_Mutation p.E264K 0.15 deleterious(0) unknown(0) TCGA-DA-A3F8-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 9 127933372 127933372 G A PPP6C Missense_Mutation p.H92Y 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 9 129595113 129595113 T A ZBTB43 Missense_Mutation p.F109I 0.19 deleterious(0.05) probably_damaging(0.987) TCGA-DA-A3F8-06 9 130251788 130251788 C T LRSAM1 Silent p.I471I 0.12 TCGA-DA-A3F8-06 9 130341246 130341246 G A FAM129B 5'UTR 0.20 TCGA-DA-A3F8-06 9 130486655 130486655 C T TTC16 Intron 0.10 TCGA-DA-A3F8-06 9 130486656 130486656 C T TTC16 Intron 0.10 TCGA-DA-A3F8-06 9 130488642 130488642 G A TTC16 Missense_Mutation p.D462N 0.19 deleterious(0.01) possibly_damaging(0.901) TCGA-DA-A3F8-06 9 130700157 130700157 C T DPM2 5'UTR 0.15 TCGA-DA-A3F8-06 9 133355802 133355802 C T ASS1 Silent p.I268I 0.15 TCGA-DA-A3F8-06 9 135206523 135206523 G A SETX Silent p.T338T 0.21 TCGA-DA-A3F8-06 9 135206524 135206524 G A SETX Missense_Mutation p.T338I 0.21 deleterious(0.04) possibly_damaging(0.703) TCGA-DA-A3F8-06 9 136081327 136081327 C T OBP2B Missense_Mutation p.G164E 0.08 tolerated(1) benign(0.122) TCGA-DA-A3F8-06 9 136389850 136389850 G A TMEM8C Silent p.F39F 0.20 TCGA-DA-A3F8-06 9 137779021 137779021 C T FCN2 Silent p.S234S 0.16 TCGA-DA-A3F8-06 9 138377153 138377153 C T PPP1R26 Missense_Mutation p.S266F 0.18 deleterious(0.02) probably_damaging(0.919) TCGA-DA-A3F8-06 9 138517989 138517989 G A GLT6D1 Silent p.F61F 0.12 TCGA-DA-A3F8-06 9 138588462 138588462 G A SOHLH1 Silent p.F219F 0.14 TCGA-DA-A3F8-06 9 138657527 138657527 C T KCNT1 Silent p.L420L 0.20 TCGA-DA-A3F8-06 9 139277730 139277730 G A SNAPC4 Missense_Mutation p.P631S 0.14 tolerated(0.37) benign(0.023) TCGA-DA-A3F8-06 9 139396258 139396258 G A NOTCH1 Silent p.P1860P 0.14 TCGA-DA-A3F8-06 9 139908410 139908410 G A ABCA2 Missense_Mutation p.H1441Y 0.20 tolerated(1) benign(0.153) TCGA-DA-A3F8-06 9 139929490 139929490 C T C9orf139 Missense_Mutation p.P186L 0.18 tolerated_low_confidence(1) unknown(0) TCGA-DA-A3F8-06 9 140157635 140157635 G A NELFB Silent p.L248L 0.14 TCGA-DA-A3F8-06 9 140469207 140469207 C T DPH7 Missense_Mutation p.G155E 0.16 tolerated(0.29) benign(0.005) TCGA-DA-A3F8-06 9 140509073 140509073 G A ARRDC1 Silent p.V286V 0.18 TCGA-DA-A3F8-06 9 14722289 14722289 C T CER1 Missense_Mutation p.E128K 0.12 tolerated(0.91) possibly_damaging(0.894) TCGA-DA-A3F8-06 9 14750162 14750162 C T FREM1 Silent p.K1840K 0.21 TCGA-DA-A3F8-06 9 18889747 18889747 G A ADAMTSL1 Splice_Site p.X1548_splice 0.31 TCGA-DA-A3F8-06 9 21187085 21187085 C T IFNA4 Missense_Mutation p.R149K 0.14 tolerated(0.08) possibly_damaging(0.591) TCGA-DA-A3F8-06 9 21202101 21202101 G T IFNA7 Missense_Mutation p.L22M 0.13 deleterious(0.02) possibly_damaging(0.841) TCGA-DA-A3F8-06 9 21216966 21216966 G A IFNA16 Silent p.F113F 0.21 TCGA-DA-A3F8-06 9 21216968 21216968 A G IFNA16 Missense_Mutation p.F113L 0.22 tolerated(0.07) benign(0.063) TCGA-DA-A3F8-06 9 27949509 27949509 G A LINGO2 Silent p.T387T 0.11 TCGA-DA-A3F8-06 9 34371687 34371687 A G KIAA1161 Silent p.L385L 0.18 TCGA-DA-A3F8-06 9 35108110 35108110 G A FAM214B Silent p.S54S 0.09 TCGA-DA-A3F8-06 9 35381639 35381639 C T UNC13B Silent p.Y777Y 0.15 TCGA-DA-A3F8-06 9 37955927 37955927 C T SHB Silent p.G393G 0.09 TCGA-DA-A3F8-06 9 39109157 39109157 G A CNTNAP3 Nonsense_Mutation p.Q789* 0.11 TCGA-DA-A3F8-06 9 5754865 5754865 G C KIAA1432 Missense_Mutation p.G543R 0.20 deleterious(0) probably_damaging(0.996) TCGA-DA-A3F8-06 9 70918757 70918757 C T FOXD4L3 Missense_Mutation p.P297L 0.34 deleterious_low_confidence(0) benign(0.354) TCGA-DA-A3F8-06 9 71668065 71668065 T C FXN Silent p.D91D 0.09 TCGA-DA-A3F8-06 9 78686660 78686660 G A PCSK5 Missense_Mutation p.G247E 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 9 78749103 78749103 G A PCSK5 Nonsense_Mutation p.W429* 0.18 TCGA-DA-A3F8-06 9 79117954 79117954 G A GCNT1 Missense_Mutation p.M219I 0.20 deleterious(0.02) benign(0.061) TCGA-DA-A3F8-06 9 79318766 79318766 C T PRUNE2 Missense_Mutation p.G2588E 0.17 tolerated(0.75) benign(0.012) TCGA-DA-A3F8-06 9 79520925 79520925 G A PRUNE2 5'UTR 0.17 TCGA-DA-A3F8-06 9 8319882 8319882 G A PTPRD Silent p.F1873F 0.10 TCGA-DA-A3F8-06 9 8341178 8341178 G A PTPRD Missense_Mutation p.P1680S 0.13 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 9 8389285 8389285 C T PTPRD Missense_Mutation p.E1445K 0.21 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 9 84608425 84608425 G A SPATA31D1 Missense_Mutation p.E1014K 0.18 deleterious(0.01) possibly_damaging(0.801) TCGA-DA-A3F8-06 9 8500899 8500899 C T PTPRD Silent p.E661E 0.17 TCGA-DA-A3F8-06 9 8633356 8633356 C T PTPRD Missense_Mutation p.G105R 0.15 deleterious(0) probably_damaging(0.999) TCGA-DA-A3F8-06 9 91041469 91041469 C T SPIN1 Silent p.F5F 0.12 TCGA-DA-A3F8-06 9 91628322 91628322 C T SHC3 3'UTR 0.18 TCGA-DA-A3F8-06 9 94493428 94493428 C T ROR2 Missense_Mutation p.C316Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-DA-A3F8-06 9 96021498 96021498 G A WNK2 Missense_Mutation p.A890T 0.23 probably_damaging(0.993) TCGA-DA-A3F8-06 X 101092587 101092587 C T NXF5 Missense_Mutation p.R320Q 0.32 tolerated(0.32) benign(0) TCGA-DA-A3F8-06 X 110653286 110653286 C T DCX Missense_Mutation p.G195E 0.36 tolerated(1) benign(0.094) TCGA-DA-A3F8-06 X 111155755 111155755 G A TRPC5 Missense_Mutation p.R222C 0.23 deleterious(0) probably_damaging(0.973) TCGA-DA-A3F8-06 X 111155756 111155756 G A TRPC5 Silent p.F221F 0.23 TCGA-DA-A3F8-06 X 118220960 118220960 G A KIAA1210 Silent p.F1411F 0.33 TCGA-DA-A3F8-06 X 12904996 12904996 C T TLR7 Missense_Mutation p.P457S 0.23 tolerated(0.72) benign(0.002) TCGA-DA-A3F8-06 X 130417074 130417074 C T IGSF1 Missense_Mutation p.E278K 0.50 tolerated(0.37) probably_damaging(0.998) TCGA-DA-A3F8-06 X 130678815 130678815 C T OR13H1 Silent p.S256S 0.32 TCGA-DA-A3F8-06 X 134185923 134185923 G A FAM127B Silent p.L72L 0.30 TCGA-DA-A3F8-06 X 135827495 135827495 C T ARHGEF6 Missense_Mutation p.E116K 0.27 tolerated_low_confidence(0.18) benign(0.005) TCGA-DA-A3F8-06 X 138669927 138669927 C T MCF2 Missense_Mutation p.D900N 0.40 tolerated(0.9) benign(0.001) TCGA-DA-A3F8-06 X 140995261 140995261 C T MAGEC1 Missense_Mutation p.P691S 0.39 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-DA-A3F8-06 X 142795241 142795241 C T SPANXN2 Missense_Mutation p.G146E 0.33 deleterious(0.03) unknown(0) TCGA-DA-A3F8-06 X 142967602 142967602 G A UBE2NL Missense_Mutation p.E134K 0.30 tolerated(0.22) benign(0.05) TCGA-DA-A3F8-06 X 148798468 148798468 G A MAGEA11 3'UTR 0.32 TCGA-DA-A3F8-06 X 151358362 151358362 G A GABRA3 Missense_Mutation p.S328F 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 X 151424446 151424446 G A GABRA3 Missense_Mutation p.R119W 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A3F8-06 X 295077 295077 C T PPP2R3B 3'UTR 0.15 TCGA-DA-A3F8-06 X 3241150 3241150 G A MXRA5 Missense_Mutation p.S859F 0.36 deleterious(0.03) benign(0.088) TCGA-DA-A3F8-06 X 35971754 35971754 G A CXorf22 Silent p.Q364Q 0.27 TCGA-DA-A3F8-06 X 35974281 35974281 G A CXorf22 Missense_Mutation p.E460K 0.40 tolerated(0.13) benign(0.033) TCGA-DA-A3F8-06 X 41202524 41202524 A C DDX3X Missense_Mutation p.Y200S 0.47 deleterious(0) probably_damaging(0.988) TCGA-DA-A3F8-06 X 43652797 43652797 G A MAOB Missense_Mutation p.P266L 0.47 tolerated(0.11) possibly_damaging(0.716) TCGA-DA-A3F8-06 X 54275963 54275963 C T WNK3 Missense_Mutation p.D940N 0.34 tolerated(0.13) benign(0.003) TCGA-DA-A3F8-06 X 57515187 57515187 C T FAAH2 Intron 0.55 TCGA-DA-A3F8-06 X 64138873 64138873 C T ZC4H2 Intron 0.28 TCGA-DA-A3F8-06 X 64140111 64140111 G A ZC4H2 Missense_Mutation p.S83F 0.31 deleterious(0) probably_damaging(0.925) TCGA-DA-A3F8-06 X 73962824 73962824 C T KIAA2022 Nonsense_Mutation p.W523* 0.44 TCGA-DA-A3F8-06 X 75004584 75004584 C T MAGEE2 Missense_Mutation p.M101I 0.36 tolerated(0.37) probably_damaging(0.954) TCGA-DA-A3F8-06 X 78216114 78216114 C T P2RY10 Nonsense_Mutation p.Q33* 0.37 TCGA-DA-A3F8-06 X 83390150 83390150 G A RPS6KA6 Silent p.H190H 0.41 TCGA-DA-A3F8-06 X 83400519 83400519 C T RPS6KA6 Silent p.R156R 0.33 TCGA-DA-A3F8-06 X 85950044 85950044 G A DACH2 Missense_Mutation p.D265N 0.24 deleterious(0.03) benign(0.355) TCGA-DA-A3F8-06 X 92926790 92926790 C T NAP1L3 Missense_Mutation p.R505K 0.53 tolerated_low_confidence(0.49) benign(0.067) TCGA-DA-A3F8-06 Y 22930724 22930724 G A RPS4Y2 Missense_Mutation p.G132R 0.39 deleterious(0.05) possibly_damaging(0.546) TCGA-DA-A95V-06 10 129868668 129868668 G A PTPRE Missense_Mutation p.G416D 0.26 tolerated(0.21) benign(0.031) TCGA-DA-A95V-06 10 134660472 134660472 G A TTC40 Silent p.D2077D 0.20 TCGA-DA-A95V-06 10 22030961 22030961 A G MLLT10 3'UTR 0.63 TCGA-DA-A95V-06 10 37508553 37508553 G A ANKRD30A Missense_Mutation p.E1249K 0.42 tolerated(0.22) possibly_damaging(0.651) TCGA-DA-A95V-06 10 60549665 60549665 C T BICC1 Missense_Mutation p.S340F 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-DA-A95V-06 10 76928316 76928316 G A SAMD8 Missense_Mutation p.R231K 0.18 deleterious(0) probably_damaging(0.996) TCGA-DA-A95V-06 10 82191870 82191870 C T FAM213A 3'UTR 0.25 TCGA-DA-A95V-06 10 96701641 96701641 C T CYP2C9 Silent p.F65F 0.34 TCGA-DA-A95V-06 10 96708975 96708975 C T CYP2C9 Silent p.H251H 0.20 TCGA-DA-A95V-06 10 96708976 96708976 C T CYP2C9 Nonsense_Mutation p.Q252* 0.22 TCGA-DA-A95V-06 10 97386479 97386479 G A ALDH18A1 Missense_Mutation p.A378V 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A95V-06 10 98411055 98411055 C T PIK3AP1 Missense_Mutation p.G313E 0.29 deleterious(0) probably_damaging(0.954) TCGA-DA-A95V-06 10 98766305 98766305 C T SLIT1 Missense_Mutation p.D1172N 0.25 tolerated(0.61) probably_damaging(0.998) TCGA-DA-A95V-06 11 116656340 116656340 G A ZNF259 Missense_Mutation p.P199S 0.68 tolerated(0.35) probably_damaging(1) TCGA-DA-A95V-06 11 118827129 118827129 G A UPK2 Silent p.G23G 0.52 TCGA-DA-A95V-06 11 120327907 120327907 T A ARHGEF12 Missense_Mutation p.F713I 0.55 deleterious(0.04) probably_damaging(0.979) TCGA-DA-A95V-06 11 125617707 125617707 G A PATE1 Silent p.R79R 0.46 TCGA-DA-A95V-06 11 125617713 125617713 C T PATE1 Silent p.F81F 0.48 TCGA-DA-A95V-06 11 1586955 1586955 G A DUSP8 Silent p.S34S 0.51 TCGA-DA-A95V-06 11 17542904 17542904 C T USH1C Silent p.K358K 0.27 TCGA-DA-A95V-06 11 18738527 18738527 C T IGSF22 Missense_Mutation p.G332R 0.16 tolerated(0.17) probably_damaging(0.954) TCGA-DA-A95V-06 11 30930564 30930564 C T DCDC1 Missense_Mutation p.E1283K 0.19 deleterious(0.02) possibly_damaging(0.486) TCGA-DA-A95V-06 11 3735067 3735067 G C NUP98 Missense_Mutation p.T853S 0.48 deleterious(0.04) benign(0.107) TCGA-DA-A95V-06 11 44193276 44193276 A G EXT2 Missense_Mutation p.N463S 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 11 45671214 45671214 C T CHST1 3'UTR 0.46 TCGA-DA-A95V-06 11 5323068 5323068 G A OR51B4 Missense_Mutation p.L37F 0.35 tolerated(0.27) benign(0.071) TCGA-DA-A95V-06 11 57175192 57175192 G A SLC43A3 3'UTR 0.25 TCGA-DA-A95V-06 11 58378493 58378493 C T ZFP91 Missense_Mutation p.P230S 0.44 tolerated(0.1) possibly_damaging(0.777) TCGA-DA-A95V-06 11 60531219 60531219 C T MS4A15 Missense_Mutation p.P5S 0.09 deleterious(0.01) benign(0.018) TCGA-DA-A95V-06 11 65647723 65647723 G C CTSW Missense_Mutation p.Q46H 0.27 deleterious(0.01) probably_damaging(0.963) TCGA-DA-A95V-06 11 65647740 65647740 G C CTSW Missense_Mutation p.S52T 0.35 tolerated(0.42) benign(0.252) TCGA-DA-A95V-06 11 67269974 67269974 C T PITPNM1 Splice_Site p.X98_splice 0.65 TCGA-DA-A95V-06 11 7982099 7982099 G A NLRP10 Missense_Mutation p.P354S 0.48 deleterious(0) probably_damaging(0.996) TCGA-DA-A95V-06 11 82611286 82611286 G A PRCP Silent p.F53F 0.44 TCGA-DA-A95V-06 11 8496524 8496524 G A STK33 5'UTR 0.40 TCGA-DA-A95V-06 12 104383242 104383242 C T GLT8D2 Missense_Mutation p.E332K 0.73 deleterious(0.04) benign(0.038) TCGA-DA-A95V-06 12 120741694 120741694 C T SIRT4 Silent p.F110F 0.64 TCGA-DA-A95V-06 12 12874188 12874188 C T CDKN1B 3'UTR 0.26 TCGA-DA-A95V-06 12 21392046 21392046 G A SLCO1B1 Missense_Mutation p.E667K 0.32 tolerated(0.05) possibly_damaging(0.821) TCGA-DA-A95V-06 12 31945041 31945041 C T H3F3C Silent p.Q20Q 0.51 TCGA-DA-A95V-06 12 40749931 40749931 T A LRRK2 Missense_Mutation p.F2262Y 0.46 tolerated(0.6) benign(0.105) TCGA-DA-A95V-06 12 46321656 46321656 T C SCAF11 Missense_Mutation p.K610E 0.15 tolerated(0.33) benign(0.004) TCGA-DA-A95V-06 12 46321657 46321657 G T SCAF11 Silent p.P609P 0.15 TCGA-DA-A95V-06 12 46598323 46598323 G A SLC38A1 Silent p.L233L 0.63 TCGA-DA-A95V-06 12 50355972 50355972 C T AQP5 Nonsense_Mutation p.Q58* 0.59 TCGA-DA-A95V-06 12 54930826 54930826 G A NCKAP1L Missense_Mutation p.E1058K 0.62 deleterious(0) probably_damaging(0.99) TCGA-DA-A95V-06 12 55420930 55420930 C T NEUROD4 Missense_Mutation p.S236F 0.11 tolerated(0.83) possibly_damaging(0.724) TCGA-DA-A95V-06 12 56351797 56351797 T C PMEL Missense_Mutation p.T181A 0.21 deleterious(0.04) benign(0.018) TCGA-DA-A95V-06 12 56351798 56351798 G C PMEL Silent p.G180G 0.21 TCGA-DA-A95V-06 12 57112734 57112734 G A NACA Intron 0.17 TCGA-DA-A95V-06 12 57348866 57348866 G A RDH16 Silent p.T132T 0.07 TCGA-DA-A95V-06 12 57348867 57348867 G A RDH16 Missense_Mutation p.T132I 0.08 deleterious(0.01) benign(0.144) TCGA-DA-A95V-06 12 58112119 58112119 G A OS9 Missense_Mutation p.G442E 0.06 deleterious(0.01) possibly_damaging(0.77) TCGA-DA-A95V-06 12 76844696 76844696 G A OSBPL8 Missense_Mutation p.A51V 0.16 deleterious_low_confidence(0.03) benign(0.001) TCGA-DA-A95V-06 12 9016604 9016604 G A A2ML1 Silent p.Q1239Q 0.19 TCGA-DA-A95V-06 12 95702291 95702291 C T MIR3685 5'Flank 0.65 TCGA-DA-A95V-06 12 96104258 96104258 C T NTN4 Missense_Mutation p.D381N 0.67 tolerated(0.05) benign(0.35) TCGA-DA-A95V-06 12 96354386 96354386 G A AMDHD1 Silent p.P266P 0.70 TCGA-DA-A95V-06 13 39264977 39264977 C T FREM2 Missense_Mutation p.R1166C 0.67 deleterious(0.05) benign(0.03) TCGA-DA-A95V-06 13 47316039 47316039 C T LRCH1 3'UTR 0.61 TCGA-DA-A95V-06 13 52639590 52639590 C G NEK5 Missense_Mutation p.E694Q 0.05 tolerated(0.65) benign(0) TCGA-DA-A95V-06 13 84453995 84453995 C T SLITRK1 Missense_Mutation p.E550K 0.64 tolerated(0.16) benign(0.001) TCGA-DA-A95V-06 13 84455702 84455702 G T SLITRK1 5'UTR 0.45 TCGA-DA-A95V-06 13 96553135 96553135 G A UGGT2 Nonsense_Mutation p.R854* 0.23 TCGA-DA-A95V-06 14 20215844 20215844 C T OR4Q3 Silent p.F86F 0.12 TCGA-DA-A95V-06 14 20345316 20345316 C T OR4K2 Missense_Mutation p.A297V 0.64 deleterious(0.02) benign(0.082) TCGA-DA-A95V-06 14 20979142 20979142 G A RNASE10 Missense_Mutation p.R171Q 0.23 tolerated(0.06) possibly_damaging(0.904) TCGA-DA-A95V-06 14 23887424 23887424 C T MYH7 Silent p.E1388E 0.06 TCGA-DA-A95V-06 14 45633716 45633716 G A FANCM Missense_Mutation p.R579H 0.08 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 14 74824851 74824851 C T VRTN Silent p.A455A 0.20 TCGA-DA-A95V-06 14 80158599 80158599 G A NRXN3 Intron 0.24 TCGA-DA-A95V-06 15 25472289 25472289 G A SNORD115-31 RNA 0.24 TCGA-DA-A95V-06 15 38762448 38762448 C T FAM98B Nonsense_Mutation p.Q125* 0.38 TCGA-DA-A95V-06 15 42173368 42173368 G A SPTBN5 Missense_Mutation p.S841F 0.26 benign(0.198) TCGA-DA-A95V-06 15 42379856 42379856 C T PLA2G4D Missense_Mutation p.E30K 0.24 tolerated(0.36) benign(0.042) TCGA-DA-A95V-06 15 50782048 50782048 C T USP8 Silent p.I647I 0.26 TCGA-DA-A95V-06 15 57730510 57730510 G A CGNL1 Missense_Mutation p.E105K 0.47 tolerated(0.25) benign(0.334) TCGA-DA-A95V-06 15 64455229 64455229 G A PPIB 5'UTR 0.60 TCGA-DA-A95V-06 15 71952962 71952962 G C THSD4 Missense_Mutation p.G416R 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A95V-06 15 90246377 90246377 T A WDR93 Intron 0.47 TCGA-DA-A95V-06 16 15917200 15917200 G A MYH11 Silent p.I138I 0.23 TCGA-DA-A95V-06 16 1990832 1990832 G A MSRB1 Missense_Mutation p.P89L 0.24 tolerated(0.19) benign(0.002) TCGA-DA-A95V-06 16 23382620 23382620 G A SCNN1B Missense_Mutation p.G294D 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 16 24192184 24192184 G A PRKCB Missense_Mutation p.E490K 0.14 deleterious(0) probably_damaging(0.997) TCGA-DA-A95V-06 16 24373066 24373066 G A CACNG3 Missense_Mutation p.G277E 0.52 deleterious(0.01) possibly_damaging(0.517) TCGA-DA-A95V-06 16 24373067 24373067 G A CACNG3 Silent p.G277G 0.54 TCGA-DA-A95V-06 16 24902225 24902225 G A SLC5A11 Missense_Mutation p.E234K 0.53 tolerated(0.15) benign(0.021) TCGA-DA-A95V-06 16 25255140 25255140 G A ZKSCAN2 Silent p.F649F 0.43 TCGA-DA-A95V-06 16 27492494 27492494 T G GTF3C1 Missense_Mutation p.K1368Q 0.61 deleterious(0.01) possibly_damaging(0.747) TCGA-DA-A95V-06 16 27517395 27517395 G A GTF3C1 Missense_Mutation p.P532L 0.24 tolerated(0.42) benign(0.004) TCGA-DA-A95V-06 16 3556383 3556383 G T CLUAP1 Missense_Mutation p.V63F 0.27 deleterious(0) probably_damaging(0.976) TCGA-DA-A95V-06 16 61761039 61761039 C T CDH8 Missense_Mutation p.E499K 0.42 tolerated(0.42) benign(0.225) TCGA-DA-A95V-06 16 66972072 66972072 C T CES2 Missense_Mutation p.P134L 0.41 tolerated(0.1) benign(0.012) TCGA-DA-A95V-06 16 69727011 69727011 C T NFAT5 Missense_Mutation p.P1095S 0.39 benign(0.009) TCGA-DA-A95V-06 16 77401432 77401432 G A ADAMTS18 Silent p.S228S 0.47 TCGA-DA-A95V-06 16 80646663 80646663 G A CDYL2 Silent p.L360L 0.36 TCGA-DA-A95V-06 16 9857762 9857762 G T GRIN2A Missense_Mutation p.H1213Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-DA-A95V-06 17 10224989 10224989 C T MYH13 Missense_Mutation p.E991K 0.34 deleterious(0) benign(0.018) TCGA-DA-A95V-06 17 10300132 10300132 C T MYH8 Silent p.R1450R 0.39 TCGA-DA-A95V-06 17 10348587 10348587 A C MYH4 Missense_Mutation p.N1754K 0.40 tolerated(0.06) benign(0.019) TCGA-DA-A95V-06 17 10432094 10432094 C T MYH2 Silent p.V1219V 0.38 TCGA-DA-A95V-06 17 19687071 19687071 G A ULK2 Missense_Mutation p.P800L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A95V-06 17 2268553 2268553 C T SGSM2 Silent p.S402S 0.38 TCGA-DA-A95V-06 17 29652988 29652988 G A NF1 Nonsense_Mutation p.W1662* 0.18 TCGA-DA-A95V-06 17 29654505 29654525 ACCACTTTCCAGGTTGGTTCT - NF1 Splice_Site p.X1757_splice 0.61 TCGA-DA-A95V-06 17 30374809 30374809 G A LRRC37B Missense_Mutation p.G758R 0.50 deleterious(0) probably_damaging(0.979) TCGA-DA-A95V-06 17 30374810 30374810 G A LRRC37B Missense_Mutation p.G758E 0.50 tolerated(0.1) probably_damaging(0.972) TCGA-DA-A95V-06 17 34234295 34234295 G A AC015849.16 RNA 0.47 TCGA-DA-A95V-06 17 34937882 34937882 C T GGNBP2 Missense_Mutation p.R377W 0.22 deleterious(0) probably_damaging(0.965) TCGA-DA-A95V-06 17 36070565 36070565 G A HNF1B Silent p.V384V 0.47 TCGA-DA-A95V-06 17 40344415 40344415 C T GHDC Missense_Mutation p.E245K 0.35 tolerated(0.11) possibly_damaging(0.861) TCGA-DA-A95V-06 17 42453324 42453324 A T ITGA2B Missense_Mutation p.N826K 0.31 tolerated(0.29) benign(0.057) TCGA-DA-A95V-06 17 4607160 4607160 G A PELP1 Nonsense_Mutation p.Q83* 0.35 TCGA-DA-A95V-06 17 48191609 48191609 G A SAMD14 Missense_Mutation p.P323L 0.45 tolerated(0.72) benign(0.302) TCGA-DA-A95V-06 17 56350954 56350954 G A MPO Missense_Mutation p.S481F 0.41 deleterious(0) benign(0.017) TCGA-DA-A95V-06 17 61621708 61621708 G A KCNH6 Missense_Mutation p.D814N 0.44 tolerated_low_confidence(0.19) benign(0.001) TCGA-DA-A95V-06 17 62893201 62893201 G A LRRC37A3 Missense_Mutation p.P59S 0.15 tolerated(0.25) benign(0.001) TCGA-DA-A95V-06 17 63534441 63534441 C T AXIN2 Silent p.K360K 0.21 TCGA-DA-A95V-06 17 66268801 66268801 C T SLC16A6 Missense_Mutation p.A162T 0.05 tolerated(0.07) probably_damaging(1) TCGA-DA-A95V-06 17 67004205 67004205 G A ABCA9 Nonsense_Mutation p.Q1107* 0.26 TCGA-DA-A95V-06 17 6945075 6945075 C T SLC16A11 Missense_Mutation p.G447R 0.29 tolerated(0.08) benign(0.053) TCGA-DA-A95V-06 17 71233044 71233044 C T C17orf80 Silent p.L475L 0.58 TCGA-DA-A95V-06 17 7160288 7160288 G A ELP5 Silent p.L190L 0.25 TCGA-DA-A95V-06 17 7416402 7416402 G T POLR2A Missense_Mutation p.G1607C 0.25 probably_damaging(0.947) TCGA-DA-A95V-06 17 76045448 76045448 C T TNRC6C Missense_Mutation p.P102L 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 17 76570873 76570873 C T DNAH17 Silent p.K89K 0.48 TCGA-DA-A95V-06 18 28968435 28968435 G A DSG4 Missense_Mutation p.E108K 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-DA-A95V-06 18 29044223 29044223 C T DSG3 Silent p.F383F 0.57 TCGA-DA-A95V-06 18 29044224 29044224 C T DSG3 Missense_Mutation p.R384C 0.56 tolerated(0.07) possibly_damaging(0.724) TCGA-DA-A95V-06 18 29178560 29178560 C T TTR Silent p.P122P 0.21 TCGA-DA-A95V-06 18 347113 347113 G A COLEC12 Missense_Mutation p.T170I 0.24 deleterious(0) probably_damaging(0.969) TCGA-DA-A95V-06 18 47429122 47429122 C G MYO5B Missense_Mutation p.D885H 0.11 tolerated(0.21) benign(0.005) TCGA-DA-A95V-06 18 56184307 56184307 A C ALPK2 Missense_Mutation p.F1925V 0.46 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 18 56184308 56184308 G A ALPK2 Silent p.H1924H 0.45 TCGA-DA-A95V-06 18 56202812 56202812 G A ALPK2 Missense_Mutation p.S1536F 0.40 tolerated(0.16) benign(0.006) TCGA-DA-A95V-06 18 63492047 63492047 G A CDH7 Missense_Mutation p.G321R 0.53 deleterious(0) probably_damaging(0.998) TCGA-DA-A95V-06 18 67794888 67794888 G A RTTN Missense_Mutation p.S1078F 0.23 deleterious(0) possibly_damaging(0.76) TCGA-DA-A95V-06 18 7231966 7231966 C T LRRC30 Missense_Mutation p.S277F 0.44 tolerated(0.08) benign(0.013) TCGA-DA-A95V-06 18 72775381 72775381 G A ZNF407 Missense_Mutation p.V1902M 0.53 deleterious(0) probably_damaging(0.998) TCGA-DA-A95V-06 19 16594841 16594841 G A CALR3 Missense_Mutation p.S193F 0.61 deleterious(0) possibly_damaging(0.853) TCGA-DA-A95V-06 19 17013589 17013589 C T CPAMD8 Missense_Mutation p.G1566R 0.15 tolerated(0.58) benign(0.001) TCGA-DA-A95V-06 19 17038973 17038973 G A CPAMD8 Silent p.V1119V 0.15 TCGA-DA-A95V-06 19 17370130 17370130 C T USHBP1 Silent p.E338E 0.59 TCGA-DA-A95V-06 19 17722626 17722626 G A UNC13A Missense_Mutation p.H1533Y 0.18 tolerated(0.05) possibly_damaging(0.521) TCGA-DA-A95V-06 19 18391406 18391406 C G JUND Missense_Mutation p.E297Q 0.22 deleterious(0) probably_damaging(0.942) TCGA-DA-A95V-06 19 21910200 21910200 G A ZNF100 Missense_Mutation p.T305I 0.18 deleterious(0.03) probably_damaging(0.974) TCGA-DA-A95V-06 19 22362861 22362861 C T ZNF676 Missense_Mutation p.R553K 0.28 tolerated(0.46) benign(0.002) TCGA-DA-A95V-06 19 36221340 36221340 C G KMT2B Missense_Mutation p.P1725R 0.06 probably_damaging(0.987) TCGA-DA-A95V-06 19 36339614 36339614 G A NPHS1 Silent p.S365S 0.09 TCGA-DA-A95V-06 19 36594433 36594433 G A WDR62 Missense_Mutation p.G1235S 0.51 tolerated(0.08) benign(0.407) TCGA-DA-A95V-06 19 38572975 38572975 C T SIPA1L3 Missense_Mutation p.A257V 0.18 tolerated(0.24) benign(0.001) TCGA-DA-A95V-06 19 38986891 38986891 G A RYR1 Silent p.P2195P 0.33 TCGA-DA-A95V-06 19 40357407 40357407 C T FCGBP Missense_Mutation p.M5302I 0.34 benign(0.055) TCGA-DA-A95V-06 19 44426401 44426401 G A ZNF45 Intron 0.35 TCGA-DA-A95V-06 19 44933105 44933105 G A ZNF229 Silent p.I617I 0.15 TCGA-DA-A95V-06 19 45488503 45488503 T A CLPTM1 Missense_Mutation p.F205Y 0.33 tolerated(0.97) benign(0.03) TCGA-DA-A95V-06 19 45716535 45716535 C T EXOC3L2 Missense_Mutation p.R341Q 0.38 tolerated(0.1) possibly_damaging(0.816) TCGA-DA-A95V-06 19 45790840 45790840 C T MARK4 Missense_Mutation p.P471L 0.45 deleterious(0.02) probably_damaging(0.981) TCGA-DA-A95V-06 19 49796599 49796599 G A SLC6A16 Silent p.F553F 0.30 TCGA-DA-A95V-06 19 49796600 49796600 A T SLC6A16 Missense_Mutation p.F553Y 0.30 deleterious(0.03) probably_damaging(0.951) TCGA-DA-A95V-06 19 51870761 51870761 G A CLDND2 Missense_Mutation p.S127F 0.38 deleterious(0) probably_damaging(0.951) TCGA-DA-A95V-06 19 53303702 53303702 G A ZNF28 Missense_Mutation p.P466S 0.36 deleterious(0.04) possibly_damaging(0.865) TCGA-DA-A95V-06 19 58578888 58578888 C G ZNF135 Missense_Mutation p.R370G 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 19 9058691 9058691 C T MUC16 Silent p.L9585L 0.55 TCGA-DA-A95V-06 1 112233958 112233958 C T RAP1A Intron 0.67 TCGA-DA-A95V-06 1 115231281 115231281 G A AMPD1 Missense_Mutation p.S72F 0.53 deleterious(0) probably_damaging(0.982) TCGA-DA-A95V-06 1 118642303 118642303 G A SPAG17 Missense_Mutation p.S252L 0.46 deleterious(0) possibly_damaging(0.628) TCGA-DA-A95V-06 1 120050033 120050033 T C HSD3B1 5'UTR 0.62 TCGA-DA-A95V-06 1 15430638 15430638 C T KAZN Silent p.L667L 0.50 TCGA-DA-A95V-06 1 15430639 15430639 C T KAZN Missense_Mutation p.R668W 0.50 deleterious(0) probably_damaging(0.998) TCGA-DA-A95V-06 1 155921921 155921921 G A ARHGEF2 Missense_Mutation p.P697L 0.35 tolerated(0.16) possibly_damaging(0.719) TCGA-DA-A95V-06 1 155921922 155921922 G C ARHGEF2 Missense_Mutation p.P697A 0.33 tolerated(0.41) benign(0.214) TCGA-DA-A95V-06 1 156910114 156910114 G A ARHGEF11 Silent p.C1206C 0.28 TCGA-DA-A95V-06 1 165875191 165875191 G A UCK2 Missense_Mutation p.G211S 0.29 deleterious(0.01) benign(0.098) TCGA-DA-A95V-06 1 165875192 165875192 G A UCK2 Missense_Mutation p.G211D 0.29 deleterious(0) possibly_damaging(0.836) TCGA-DA-A95V-06 1 167095884 167095884 G A DUSP27 Missense_Mutation p.D506N 0.37 tolerated(0.22) benign(0.008) TCGA-DA-A95V-06 1 168032905 168032905 G T DCAF6 Nonsense_Mutation p.E783* 0.57 TCGA-DA-A95V-06 1 17603084 17603084 G A PADI3 Missense_Mutation p.E460K 0.57 tolerated(0.16) benign(0.309) TCGA-DA-A95V-06 1 200972843 200972843 G A KIF21B Silent p.L361L 0.29 TCGA-DA-A95V-06 1 20302114 20302114 G A PLA2G2A 3'UTR 0.34 TCGA-DA-A95V-06 1 204170846 204170846 G A GOLT1A Missense_Mutation p.L71F 0.19 tolerated(1) benign(0) TCGA-DA-A95V-06 1 204953229 204953229 G A NFASC Intron 0.23 TCGA-DA-A95V-06 1 207105097 207105097 C T PIGR Missense_Mutation p.E687K 0.11 tolerated(0.09) benign(0.046) TCGA-DA-A95V-06 1 218458698 218458698 G A RRP15 Missense_Mutation p.E14K 0.31 tolerated_low_confidence(0.83) benign(0) TCGA-DA-A95V-06 1 247978667 247978667 G A OR14A16 Missense_Mutation p.T122I 0.33 tolerated(0.23) benign(0.002) TCGA-DA-A95V-06 1 248637005 248637005 C T OR2T3 Silent p.F118F 0.22 TCGA-DA-A95V-06 1 57161681 57161681 C T PRKAA2 Missense_Mutation p.P213S 0.64 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 1 6214799 6214799 G A CHD5 Silent p.I222I 0.40 TCGA-DA-A95V-06 1 65047868 65047868 C T CACHD1 Silent p.N46N 0.71 TCGA-DA-A95V-06 1 78204979 78204979 G A USP33 Missense_Mutation p.P139S 0.55 tolerated(0.68) benign(0.001) TCGA-DA-A95V-06 1 89523751 89523751 T A GBP1 Silent p.V266V 0.64 TCGA-DA-A95V-06 1 97544495 97544495 G A DPYD 3'UTR 0.65 TCGA-DA-A95V-06 1 97658662 97658662 C T DPYD Missense_Mutation p.G862E 0.62 deleterious(0) probably_damaging(0.994) TCGA-DA-A95V-06 1 985641 985641 C T AGRN Silent p.F1636F 0.48 TCGA-DA-A95V-06 20 1963606 1963606 G A PDYN Missense_Mutation p.P42L 0.22 deleterious(0.03) possibly_damaging(0.585) TCGA-DA-A95V-06 20 29976790 29976790 G A DEFB119 3'UTR 0.67 TCGA-DA-A95V-06 20 30154046 30154046 G A HM13 Missense_Mutation p.G328S 0.14 deleterious(0.04) possibly_damaging(0.532) TCGA-DA-A95V-06 20 35689526 35689526 G C RBL1 Missense_Mutation p.D410E 0.24 tolerated(1) benign(0.004) TCGA-DA-A95V-06 20 47752406 47752406 C T STAU1 Silent p.E191E 0.16 TCGA-DA-A95V-06 20 49620945 49620945 G A KCNG1 Silent p.F391F 0.29 TCGA-DA-A95V-06 20 51872583 51872583 G A TSHZ2 Silent p.S862S 0.21 TCGA-DA-A95V-06 20 57876465 57876465 G A EDN3 Missense_Mutation p.G18E 0.38 deleterious(0.04) probably_damaging(1) TCGA-DA-A95V-06 20 58514507 58514507 C T PPP1R3D Silent p.P160P 0.18 TCGA-DA-A95V-06 20 60701364 60701364 C T LSM14B Missense_Mutation p.S99F 0.31 deleterious(0) probably_damaging(0.959) TCGA-DA-A95V-06 20 9546761 9546761 C T PAK7 Missense_Mutation p.D421N 0.38 tolerated(0.29) possibly_damaging(0.454) TCGA-DA-A95V-06 21 10998262 10998262 C T TPTE RNA 0.46 TCGA-DA-A95V-06 21 39817374 39817374 C A ERG Missense_Mutation p.R70S 0.20 deleterious(0.01) benign(0.168) TCGA-DA-A95V-06 21 45053201 45053203 CAA G HSF2BP Frame_Shift_Del p.W132Gfs*6 0.54 TCGA-DA-A95V-06 22 38120218 38120218 C T TRIOBP Missense_Mutation p.S552F 0.31 tolerated_low_confidence(0.16) possibly_damaging(0.485) TCGA-DA-A95V-06 22 39419010 39419010 C T APOBEC3D Silent p.H67H 0.14 TCGA-DA-A95V-06 2 112922651 112922651 C A FBLN7 Silent p.V103V 0.22 TCGA-DA-A95V-06 2 125671691 125671691 C T CNTNAP5 Silent p.F1249F 0.23 TCGA-DA-A95V-06 2 136023176 136023176 G A ZRANB3 Silent p.F489F 0.20 TCGA-DA-A95V-06 2 136566761 136566761 G A LCT Silent p.T1052T 0.33 TCGA-DA-A95V-06 2 141245308 141245308 C T LRP1B Missense_Mutation p.G3041R 0.23 probably_damaging(0.953) TCGA-DA-A95V-06 2 159201734 159201734 C T CCDC148 Missense_Mutation p.E82K 0.42 tolerated(0.28) possibly_damaging(0.801) TCGA-DA-A95V-06 2 165765158 165765158 C T SLC38A11 Missense_Mutation p.E307K 0.52 deleterious(0) probably_damaging(0.98) TCGA-DA-A95V-06 2 170048391 170048391 C T LRP2 Missense_Mutation p.E2995K 0.39 benign(0.21) TCGA-DA-A95V-06 2 170068680 170068680 C T LRP2 Missense_Mutation p.M2026I 0.29 benign(0.001) TCGA-DA-A95V-06 2 171693340 171693340 G A GAD1 Silent p.L195L 0.18 TCGA-DA-A95V-06 2 179440112 179440112 T G TTN Missense_Mutation p.T23583P 0.28 TCGA-DA-A95V-06 2 179579992 179579992 C T TTN Splice_Site p.X8641_splice 0.45 TCGA-DA-A95V-06 2 179604121 179604121 C T TTN Silent p.V4613V 0.12 TCGA-DA-A95V-06 2 179634491 179634491 G A TTN Silent p.I2939I 0.20 TCGA-DA-A95V-06 2 179641735 179641735 G A TTN Missense_Mutation p.S1619F 0.41 TCGA-DA-A95V-06 2 183088673 183088673 C T PDE1A Missense_Mutation p.E248K 0.50 deleterious(0) possibly_damaging(0.779) TCGA-DA-A95V-06 2 187693095 187693095 C T ZSWIM2 Silent p.G506G 0.36 TCGA-DA-A95V-06 2 191523995 191523995 C T NAB1 Silent p.I31I 0.24 TCGA-DA-A95V-06 2 207169742 207169742 C T ZDBF2 Silent p.L164L 0.26 TCGA-DA-A95V-06 2 218757706 218757706 G A TNS1 Silent p.I124I 0.32 TCGA-DA-A95V-06 2 228754576 228754576 G A DAW1 Missense_Mutation p.D40N 0.18 tolerated(0.34) benign(0.005) TCGA-DA-A95V-06 2 228883733 228883733 C T SPHKAP Missense_Mutation p.E613K 0.25 tolerated(0.24) benign(0.022) TCGA-DA-A95V-06 2 228884687 228884687 C T SPHKAP Missense_Mutation p.A295T 0.22 tolerated(0.66) benign(0.004) TCGA-DA-A95V-06 2 238242190 238242190 C T COL6A3 Silent p.K3077K 0.37 TCGA-DA-A95V-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.58 TCGA-DA-A95V-06 2 29256429 29256429 G A FAM179A Missense_Mutation p.G742E 0.55 deleterious(0.01) benign(0.045) TCGA-DA-A95V-06 2 30977214 30977214 C T CAPN13 Missense_Mutation p.E295K 0.73 tolerated(0.48) benign(0.156) TCGA-DA-A95V-06 2 43514091 43514091 G A THADA Missense_Mutation p.T1707I 0.12 tolerated(0.51) benign(0.002) TCGA-DA-A95V-06 2 54482272 54482272 G A TSPYL6 Silent p.F339F 0.35 TCGA-DA-A95V-06 2 69472528 69472528 C T ANTXR1 Missense_Mutation p.P536S 0.36 tolerated_low_confidence(0.12) unknown(0) TCGA-DA-A95V-06 2 74136205 74136205 C T ACTG2 Silent p.V130V 0.27 TCGA-DA-A95V-06 2 74598803 74598803 G A DCTN1 Missense_Mutation p.P169L 0.38 tolerated(0.08) benign(0.023) TCGA-DA-A95V-06 2 75425713 75425713 G A TACR1 Silent p.V116V 0.36 TCGA-DA-A95V-06 2 80085198 80085198 C T CTNNA2 Missense_Mutation p.R120C 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A95V-06 2 85838876 85838876 G A C2orf68 Silent p.A47A 0.27 TCGA-DA-A95V-06 3 109027027 109027027 T C DPPA2 Silent p.E170E 0.16 TCGA-DA-A95V-06 3 111604186 111604186 G A PHLDB2 Missense_Mutation p.G421E 0.67 deleterious(0) probably_damaging(0.996) TCGA-DA-A95V-06 3 124449234 124449234 G A UMPS 5'UTR 0.72 TCGA-DA-A95V-06 3 126071390 126071390 G A KLF15 Missense_Mutation p.P126S 0.69 tolerated(0.82) benign(0.01) TCGA-DA-A95V-06 3 14508094 14508094 C T SLC6A6 Missense_Mutation p.P268L 0.77 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 3 161221621 161221621 G A OTOL1 Nonsense_Mutation p.W442* 0.94 TCGA-DA-A95V-06 3 45031102 45031102 C T EXOSC7 Missense_Mutation p.P74S 0.50 deleterious(0.04) benign(0.252) TCGA-DA-A95V-06 3 48450983 48450983 T A PLXNB1 Missense_Mutation p.N1979Y 0.73 deleterious(0) probably_damaging(0.98) TCGA-DA-A95V-06 3 48450984 48450984 G T PLXNB1 Silent p.T1978T 0.74 TCGA-DA-A95V-06 3 52727700 52727700 G A GNL3 Silent p.L459L 0.08 TCGA-DA-A95V-06 3 7494425 7494425 G A GRM7 Missense_Mutation p.V436I 0.18 tolerated(0.13) benign(0.002) TCGA-DA-A95V-06 3 77147366 77147366 G A ROBO2 Missense_Mutation p.G104E 0.26 deleterious(0) unknown(0) TCGA-DA-A95V-06 3 77623700 77623700 G A ROBO2 Silent p.Q690Q 0.48 TCGA-DA-A95V-06 3 88205777 88205777 C T C3orf38 Nonsense_Mutation p.Q328* 0.42 TCGA-DA-A95V-06 3 89391195 89391195 C T EPHA3 Missense_Mutation p.P421S 0.29 tolerated(0.84) benign(0.001) TCGA-DA-A95V-06 4 111397871 111397871 C T ENPEP Missense_Mutation p.H101Y 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 4 155278420 155278420 C T DCHS2 Missense_Mutation p.E251K 0.55 tolerated(0.89) benign(0.001) TCGA-DA-A95V-06 4 55955623 55955623 C A KDR Missense_Mutation p.G1108W 0.04 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 4 71063769 71063769 G A ODAM Silent p.Q90Q 0.54 TCGA-DA-A95V-06 4 74274453 74274453 G A ALB Missense_Mutation p.R138Q 0.42 tolerated(0.33) benign(0) TCGA-DA-A95V-06 4 89018745 89018745 C T ABCG2 Missense_Mutation p.A503T 0.52 tolerated(0.1) benign(0.141) TCGA-DA-A95V-06 4 89018746 89018746 C T ABCG2 Silent p.K502K 0.54 TCGA-DA-A95V-06 4 90169426 90169426 C T GPRIN3 Missense_Mutation p.M612I 0.57 tolerated(0.13) benign(0.01) TCGA-DA-A95V-06 5 110456205 110456205 C T WDR36 Missense_Mutation p.S695F 0.52 deleterious(0.02) possibly_damaging(0.862) TCGA-DA-A95V-06 5 11199695 11199695 C T CTNND2 Missense_Mutation p.G614R 0.08 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 5 128362867 128362867 C T SLC27A6 Missense_Mutation p.P433S 0.53 deleterious(0) probably_damaging(0.997) TCGA-DA-A95V-06 5 134303791 134303791 C T PCBD2 3'UTR 0.59 TCGA-DA-A95V-06 5 13841216 13841216 C T DNAH5 Missense_Mutation p.M1836I 0.44 benign(0.019) TCGA-DA-A95V-06 5 140502453 140502453 C T PCDHB4 Silent p.F291F 0.56 TCGA-DA-A95V-06 5 150663691 150663691 G A SLC36A3 Silent p.I337I 0.40 TCGA-DA-A95V-06 5 155054 155054 A C PLEKHG4B Missense_Mutation p.D330A 0.39 deleterious(0.04) benign(0.093) TCGA-DA-A95V-06 5 160034057 160034057 C T ATP10B Missense_Mutation p.E959K 0.43 tolerated(0.12) probably_damaging(0.911) TCGA-DA-A95V-06 5 167642092 167642092 G A TENM2 Missense_Mutation p.G1298D 0.05 deleterious(0.04) probably_damaging(0.996) TCGA-DA-A95V-06 5 167987897 167987897 G A PANK3 Intron 0.26 TCGA-DA-A95V-06 5 173473757 173473757 G A NSG2 5'UTR 0.30 TCGA-DA-A95V-06 5 176522591 176522591 G A FGFR4 Missense_Mutation p.R563Q 0.38 tolerated(0.11) probably_damaging(0.996) TCGA-DA-A95V-06 5 178050303 178050303 C G CLK4 Missense_Mutation p.E39Q 0.07 deleterious_low_confidence(0.01) benign(0.064) TCGA-DA-A95V-06 5 180424285 180424285 C T BTNL3 Missense_Mutation p.S157L 0.69 deleterious(0.05) benign(0.035) TCGA-DA-A95V-06 5 23510083 23510083 T A PRDM9 Missense_Mutation p.L83H 0.32 tolerated_low_confidence(0.49) benign(0.206) TCGA-DA-A95V-06 5 26881162 26881162 C T CDH9 3'UTR 0.49 TCGA-DA-A95V-06 5 41150048 41150048 T G C6 Missense_Mutation p.E790D 0.54 tolerated(0.1) benign(0.411) TCGA-DA-A95V-06 5 41382071 41382071 C T PLCXD3 Silent p.E223E 0.20 TCGA-DA-A95V-06 5 42808341 42808341 G A SEPP1 Nonsense_Mutation p.Q39* 0.23 TCGA-DA-A95V-06 5 68715466 68715466 C T MARVELD2 Missense_Mutation p.S85F 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 5 70855922 70855922 C T BDP1 Missense_Mutation p.P2452S 0.11 tolerated(0.41) benign(0.275) TCGA-DA-A95V-06 5 70855923 70855923 C T BDP1 Missense_Mutation p.P2452L 0.11 tolerated(0.94) benign(0.002) TCGA-DA-A95V-06 5 76703237 76703237 C T PDE8B Silent p.S440S 0.07 TCGA-DA-A95V-06 5 80388705 80388705 G A RASGRF2 Silent p.E492E 0.13 TCGA-DA-A95V-06 6 102503343 102503343 T C GRIK2 Missense_Mutation p.V817A 0.56 deleterious(0) possibly_damaging(0.497) TCGA-DA-A95V-06 6 105726246 105726246 G A PREP Missense_Mutation p.L636F 0.52 deleterious(0.02) possibly_damaging(0.484) TCGA-DA-A95V-06 6 136597569 136597569 C T BCLAF1 Missense_Mutation p.G365E 0.13 deleterious(0.03) probably_damaging(0.969) TCGA-DA-A95V-06 6 16254882 16254882 C G GMPR Missense_Mutation p.C127W 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 6 168479740 168479740 G A FRMD1 Missense_Mutation p.P12L 0.25 tolerated_low_confidence(0.07) benign(0.002) TCGA-DA-A95V-06 6 25850350 25850350 C T SLC17A3 Missense_Mutation p.G350E 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-DA-A95V-06 6 28501945 28501945 G A GPX5 3'UTR 0.23 TCGA-DA-A95V-06 6 28541016 28541016 C T SCAND3 Missense_Mutation p.D884N 0.23 tolerated(0.22) possibly_damaging(0.86) TCGA-DA-A95V-06 6 31237988 31237988 C A HLA-C Missense_Mutation p.W298C 0.55 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A95V-06 6 38702323 38702323 G A DNAH8 Silent p.P11P 0.28 TCGA-DA-A95V-06 6 39278712 39278712 G A KCNK17 Silent p.L103L 0.27 TCGA-DA-A95V-06 6 4126417 4126417 G A ECI2 Missense_Mutation p.P209L 0.23 tolerated(0.18) benign(0.005) TCGA-DA-A95V-06 6 43607966 43607966 C T MAD2L1BP Missense_Mutation p.P206L 0.20 tolerated(1) benign(0.058) TCGA-DA-A95V-06 6 5404916 5404916 G T FARS2 Missense_Mutation p.A252S 0.09 tolerated(0.71) benign(0.001) TCGA-DA-A95V-06 6 73043346 73043346 G A RIMS1 Missense_Mutation p.G1392R 0.20 deleterious(0) probably_damaging(0.986) TCGA-DA-A95V-06 6 76018514 76018514 C T FILIP1 Missense_Mutation p.G1179R 0.30 tolerated(0.09) possibly_damaging(0.855) TCGA-DA-A95V-06 6 87993912 87993912 G C GJB7 3'UTR 0.12 TCGA-DA-A95V-06 7 100352875 100352875 G A ZAN Missense_Mutation p.E1051K 0.33 unknown(0) TCGA-DA-A95V-06 7 100676480 100676480 G A MUC17 Missense_Mutation p.A595T 0.32 benign(0.049) TCGA-DA-A95V-06 7 122635248 122635248 C T TAS2R16 Silent p.G147G 0.37 TCGA-DA-A95V-06 7 122763240 122763240 G A SLC13A1 Silent p.F430F 0.30 TCGA-DA-A95V-06 7 138418909 138418909 C T ATP6V0A4 Missense_Mutation p.G555S 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 7 142423590 142423590 G A TRBV27 Silent p.G82G 0.50 TCGA-DA-A95V-06 7 147600773 147600773 C T CNTNAP2 Missense_Mutation p.P739S 0.36 tolerated(0.87) benign(0.002) TCGA-DA-A95V-06 7 151073007 151073007 C T NUB1 Missense_Mutation p.P514L 0.34 tolerated(0.59) benign(0.106) TCGA-DA-A95V-06 7 21611546 21611546 A G DNAH11 Silent p.K516K 0.67 TCGA-DA-A95V-06 7 32612989 32612989 C T AVL9 Missense_Mutation p.A510V 0.05 tolerated(0.26) benign(0.06) TCGA-DA-A95V-06 7 4153677 4153677 G A SDK1 Silent p.P1198P 0.57 TCGA-DA-A95V-06 7 4153678 4153678 G A SDK1 Missense_Mutation p.D1199N 0.58 deleterious(0) possibly_damaging(0.516) TCGA-DA-A95V-06 7 44714840 44714840 C T OGDH Silent p.F333F 0.06 TCGA-DA-A95V-06 7 47323370 47323370 T C TNS3 Missense_Mutation p.E1341G 0.07 deleterious(0.01) possibly_damaging(0.477) TCGA-DA-A95V-06 7 55560038 55560038 G A VOPP1 Missense_Mutation p.P89S 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95V-06 7 6502667 6502667 G A KDELR2 3'UTR 0.64 TCGA-DA-A95V-06 7 72683235 72683235 G A GTF2IRD2P1 RNA 0.27 TCGA-DA-A95V-06 7 82582007 82582007 C T PCLO Silent p.V2754V 0.52 TCGA-DA-A95V-06 7 82584658 82584658 C T PCLO Missense_Mutation p.E1871K 0.41 unknown(0) TCGA-DA-A95V-06 7 82764184 82764184 C T PCLO Silent p.Q894Q 0.27 TCGA-DA-A95V-06 7 95838172 95838172 G A SLC25A13 Missense_Mutation p.A149V 0.05 tolerated(0.37) benign(0.001) TCGA-DA-A95V-06 8 110493729 110493729 G A PKHD1L1 Missense_Mutation p.G3132E 0.27 deleterious(0) probably_damaging(0.991) TCGA-DA-A95V-06 8 110530551 110530551 G A PKHD1L1 Missense_Mutation p.E3949K 0.40 tolerated(0.12) benign(0.282) TCGA-DA-A95V-06 8 123964151 123964151 C T ZHX2 Missense_Mutation p.P134L 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 8 133045365 133045365 G A OC90 Silent p.T260T 0.67 TCGA-DA-A95V-06 8 139209784 139209784 G A FAM135B Silent p.I266I 0.36 TCGA-DA-A95V-06 8 14181616 14181616 C T SGCZ Missense_Mutation p.R111Q 0.50 deleterious(0) probably_damaging(0.928) TCGA-DA-A95V-06 8 143562634 143562634 T C BAI1 Silent p.C616C 0.40 TCGA-DA-A95V-06 8 144991286 144991312 TGTCGGCGAACTCGGTGATGGAGAGCG - PLEC In_Frame_Del p.T4363_D4371del 0.25 TCGA-DA-A95V-06 8 35647941 35647941 C T UNC5D Missense_Mutation p.R908C 0.20 tolerated(0.13) benign(0.097) TCGA-DA-A95V-06 8 72211898 72211898 G A EYA1 Missense_Mutation p.S205F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A95V-06 8 82443499 82443499 C T FABP12 Missense_Mutation p.E18K 0.42 deleterious(0) benign(0.294) TCGA-DA-A95V-06 8 97243341 97243341 G A UQCRB Missense_Mutation p.R139C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95V-06 9 107379667 107379667 C A OR13C9 Missense_Mutation p.L273F 0.26 tolerated(0.48) possibly_damaging(0.701) TCGA-DA-A95V-06 9 137801822 137801822 G A FCN1 Missense_Mutation p.S268L 0.67 tolerated(0.26) benign(0.064) TCGA-DA-A95V-06 9 140358908 140358908 C T PNPLA7 Missense_Mutation p.G1014S 0.72 tolerated(0.69) benign(0.098) TCGA-DA-A95V-06 9 14720297 14720297 C T CER1 Missense_Mutation p.A199T 0.08 tolerated(0.5) benign(0.027) TCGA-DA-A95V-06 9 18753300 18753300 G A ADAMTSL1 Missense_Mutation p.E671K 1.00 deleterious(0.03) benign(0.34) TCGA-DA-A95V-06 9 32630157 32630157 G A TAF1L Silent p.P1807P 0.36 TCGA-DA-A95V-06 9 33676415 33676415 C T PTENP1 RNA 0.06 TCGA-DA-A95V-06 9 35612968 35612968 C T CD72 Nonsense_Mutation p.W237* 0.60 TCGA-DA-A95V-06 9 70177656 70177656 G A FOXD4L5 Missense_Mutation p.P110S 0.34 deleterious(0) probably_damaging(0.992) TCGA-DA-A95V-06 9 72131032 72131032 G A APBA1 Silent p.I365I 0.72 TCGA-DA-A95V-06 9 77746739 77746739 G T OSTF1 Missense_Mutation p.G84C 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 X 105011583 105011583 G A IL1RAPL2 Missense_Mutation p.E664K 0.41 tolerated_low_confidence(0.1) benign(0.039) TCGA-DA-A95V-06 X 106114029 106114029 C T TBC1D8B Missense_Mutation p.P985S 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A95V-06 X 108924244 108924244 C T ACSL4 Missense_Mutation p.G254E 0.13 deleterious(0.03) probably_damaging(0.974) TCGA-DA-A95V-06 X 131262003 131262003 G T FRMD7 5'UTR 0.18 TCGA-DA-A95V-06 X 132351817 132351817 C T TFDP3 Silent p.V157V 0.47 TCGA-DA-A95V-06 X 135431604 135431604 C T GPR112 Silent p.H1913H 0.24 TCGA-DA-A95V-06 X 135431907 135431907 C T GPR112 Silent p.L2014L 0.56 TCGA-DA-A95V-06 X 146271220 146271220 C A MIR513C 3'Flank 0.29 TCGA-DA-A95V-06 X 151870096 151870096 C T MAGEA6 Silent p.P262P 0.35 TCGA-DA-A95V-06 X 31152307 31152307 C T DMD Silent p.E3642E 0.59 TCGA-DA-A95V-06 X 32659641 32659641 G T DMD Intron 0.58 TCGA-DA-A95V-06 X 47775818 47775818 C T ZNF81 Silent p.F591F 0.32 TCGA-DA-A95V-06 X 50377061 50377061 G A SHROOM4 Missense_Mutation p.A671V 0.50 tolerated(0.24) benign(0.002) TCGA-DA-A95V-06 X 54841852 54841852 G A MAGED2 Missense_Mutation p.E520K 0.25 deleterious(0) benign(0.359) TCGA-DA-A95V-06 X 56292023 56292023 C T KLF8 Silent p.P164P 0.13 TCGA-DA-A95V-06 X 57515355 57515355 G A FAAH2 Missense_Mutation p.G530E 0.22 deleterious(0) possibly_damaging(0.885) TCGA-DA-A95V-06 X 63413199 63413199 G A AMER1 5'UTR 0.62 TCGA-DA-A95V-06 X 70472620 70472620 G A ZMYM3 Silent p.T162T 0.57 TCGA-DA-A95V-06 X 70597617 70597617 G A TAF1 Nonsense_Mutation p.W313* 0.50 TCGA-DA-A95V-06 X 70775945 70775945 G A OGT Splice_Site p.X355_splice 0.50 TCGA-DA-A95V-06 X 76890119 76890119 A C ATRX Missense_Mutation p.L1592R 0.18 probably_damaging(1) TCGA-DA-A95W-06 10 104660369 104660369 T G AS3MT Missense_Mutation p.F347C 0.71 deleterious(0) benign(0.428) TCGA-DA-A95W-06 10 116606049 116606049 C T FAM160B1 Missense_Mutation p.P441S 0.71 tolerated(0.07) benign(0.259) TCGA-DA-A95W-06 10 127477557 127477557 G A UROS Silent p.P226P 0.78 TCGA-DA-A95W-06 10 27688159 27688159 G A PTCHD3 Silent p.V456V 0.84 TCGA-DA-A95W-06 11 113078050 113078050 C T NCAM1 Silent p.T291T 0.34 TCGA-DA-A95W-06 11 113661436 113661436 G T ATF4P4 RNA 0.43 TCGA-DA-A95W-06 11 133790376 133790376 G A IGSF9B Missense_Mutation p.P1082S 0.35 deleterious_low_confidence(0.01) benign(0.225) TCGA-DA-A95W-06 11 18765723 18765723 C T PTPN5 Missense_Mutation p.E41K 0.43 deleterious_low_confidence(0) benign(0.242) TCGA-DA-A95W-06 11 21250946 21250946 G A NELL1 Missense_Mutation p.G499R 0.41 deleterious(0) probably_damaging(0.999) TCGA-DA-A95W-06 11 4944867 4944867 C T OR51G1 Missense_Mutation p.E235K 0.35 deleterious(0.03) possibly_damaging(0.512) TCGA-DA-A95W-06 11 5730982 5730982 C T TRIM22 3'UTR 0.33 TCGA-DA-A95W-06 11 58170649 58170649 G A OR5B3 Silent p.I78I 0.44 TCGA-DA-A95W-06 11 63996771 63996771 G A NUDT22 Missense_Mutation p.R211Q 0.31 tolerated(0.34) benign(0.373) TCGA-DA-A95W-06 11 64802578 64802578 C T SNX15 Silent p.I140I 0.48 TCGA-DA-A95W-06 11 67800463 67800463 G T NDUFS8 Missense_Mutation p.W61C 0.36 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-DA-A95W-06 11 870120 870120 C T CHID1 Splice_Site p.X386_splice 0.35 TCGA-DA-A95W-06 11 89537581 89537581 C T TRIM49 Missense_Mutation p.M19I 0.36 deleterious(0.03) benign(0.214) TCGA-DA-A95W-06 11 9165761 9165761 C T DENND5A Missense_Mutation p.G1063R 0.34 deleterious(0) probably_damaging(0.994) TCGA-DA-A95W-06 12 109200135 109200135 T G SSH1 Missense_Mutation p.K256T 0.49 deleterious(0.01) possibly_damaging(0.742) TCGA-DA-A95W-06 12 109687830 109687830 G A ACACB Missense_Mutation p.G1904D 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 12 124409702 124409702 C T DNAH10 Missense_Mutation p.R3840W 0.44 probably_damaging(1) TCGA-DA-A95W-06 12 124915204 124915204 G A NCOR2 Missense_Mutation p.P338S 0.34 unknown(0) TCGA-DA-A95W-06 12 21015708 21015708 G A SLCO1B3 Missense_Mutation p.G216E 0.47 deleterious(0) possibly_damaging(0.497) TCGA-DA-A95W-06 12 521005 521005 C T CCDC77 Missense_Mutation p.S44F 0.45 deleterious(0) probably_damaging(0.973) TCGA-DA-A95W-06 12 6125374 6125374 C T VWF Missense_Mutation p.R1779Q 0.33 tolerated(0.99) possibly_damaging(0.857) TCGA-DA-A95W-06 13 113470453 113470453 C T ATP11A Silent p.F166F 0.68 TCGA-DA-A95W-06 13 29933587 29933587 G A MTUS2 Missense_Mutation p.A1042T 0.32 tolerated(1) benign(0.007) TCGA-DA-A95W-06 13 38164624 38164624 C T POSTN Missense_Mutation p.G109E 0.53 tolerated(0.07) probably_damaging(1) TCGA-DA-A95W-06 13 84453675 84453675 G A SLITRK1 Silent p.S656S 0.51 TCGA-DA-A95W-06 13 84454471 84454471 C T SLITRK1 Missense_Mutation p.R391Q 0.55 tolerated(0.13) benign(0.03) TCGA-DA-A95W-06 13 88328994 88328994 C T SLITRK5 Missense_Mutation p.R451C 0.34 deleterious(0.01) probably_damaging(0.943) TCGA-DA-A95W-06 14 22509155 22509155 C T TRAV20 Silent p.A31A 0.44 TCGA-DA-A95W-06 14 77794369 77794369 C T GSTZ1 Nonsense_Mutation p.Q111* 0.26 TCGA-DA-A95W-06 14 79433564 79433564 G A NRXN3 Missense_Mutation p.V558I 0.38 tolerated(0.12) benign(0.42) TCGA-DA-A95W-06 15 33955875 33955875 G A RYR3 Silent p.L1852L 0.50 TCGA-DA-A95W-06 15 63125643 63125643 G A TLN2 Intron 0.44 TCGA-DA-A95W-06 15 78393354 78393354 G A SH2D7 Silent p.R253R 0.35 TCGA-DA-A95W-06 15 94841809 94841809 G A MCTP2 Nonsense_Mutation p.W105* 0.55 TCGA-DA-A95W-06 16 1292309 1292309 C T TPSAB1 3'UTR 0.43 TCGA-DA-A95W-06 16 16173274 16173274 C T ABCC1 Missense_Mutation p.S685L 0.32 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 16 20448385 20448385 G A ACSM5 Silent p.E440E 0.45 TCGA-DA-A95W-06 16 21069510 21069510 C T DNAH3 Missense_Mutation p.R1274Q 0.50 deleterious(0) probably_damaging(0.995) TCGA-DA-A95W-06 16 53675229 53675229 G A RPGRIP1L Missense_Mutation p.P948S 0.46 tolerated(0.16) benign(0.002) TCGA-DA-A95W-06 16 90094081 90094082 GC - GAS8 Frame_Shift_Del p.G14Dfs*62 0.17 TCGA-DA-A95W-06 16 9858430 9858430 A G GRIN2A Missense_Mutation p.S991P 0.42 tolerated(0.19) benign(0.34) TCGA-DA-A95W-06 17 11593285 11593285 G A DNAH9 Silent p.R1382R 0.57 TCGA-DA-A95W-06 17 15341321 15341321 C T CDRT4 Silent p.P75P 0.51 TCGA-DA-A95W-06 17 18967297 18967297 C T SNORD3B-2 RNA 0.19 TCGA-DA-A95W-06 17 35783653 35783653 C A TADA2A Missense_Mutation p.L24I 0.43 tolerated(0.08) benign(0.29) TCGA-DA-A95W-06 17 46700176 46700176 C T HOXB9 3'UTR 0.50 TCGA-DA-A95W-06 17 47299945 47299945 G A ABI3 Silent p.K323K 0.34 TCGA-DA-A95W-06 17 56620889 56620889 C T C17orf47 Missense_Mutation p.R220K 0.52 tolerated(0.34) benign(0) TCGA-DA-A95W-06 17 59560560 59560560 C T TBX4 Missense_Mutation p.P441S 0.36 tolerated(0.56) benign(0.002) TCGA-DA-A95W-06 17 60351207 60351207 A C TBC1D3P2 RNA 0.45 TCGA-DA-A95W-06 17 65105391 65105391 G A HELZ Missense_Mutation p.P1444S 0.33 tolerated_low_confidence(0.37) unknown(0) TCGA-DA-A95W-06 17 72923351 72923351 G A OTOP2 Missense_Mutation p.V162I 0.34 tolerated(0.86) benign(0.027) TCGA-DA-A95W-06 17 76825049 76825049 G A USP36 Silent p.N172N 0.29 TCGA-DA-A95W-06 18 14522379 14522379 C T POTEC Missense_Mutation p.G428E 0.29 tolerated(0.96) possibly_damaging(0.491) TCGA-DA-A95W-06 18 43699959 43699959 A C HAUS1 Missense_Mutation p.K137Q 0.33 tolerated(0.21) benign(0.009) TCGA-DA-A95W-06 18 55319361 55319361 G A ATP8B1 Missense_Mutation p.S1102L 0.49 tolerated(0.07) benign(0.293) TCGA-DA-A95W-06 18 9255101 9255101 C T ANKRD12 Silent p.F612F 0.44 TCGA-DA-A95W-06 19 11224428 11224428 C T LDLR Missense_Mutation p.P526S 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 19 13342531 13342531 G A CACNA1A Missense_Mutation p.S1798L 0.50 possibly_damaging(0.519) TCGA-DA-A95W-06 19 23543811 23543811 G A ZNF91 Missense_Mutation p.P657L 0.35 tolerated(0.07) probably_damaging(0.996) TCGA-DA-A95W-06 19 23926749 23926749 T G ZNF681 Missense_Mutation p.T535P 0.07 deleterious(0) probably_damaging(0.961) TCGA-DA-A95W-06 19 3005778 3005778 G A TLE2 Silent p.F563F 0.22 TCGA-DA-A95W-06 19 37880029 37880029 T G ZNF527 Missense_Mutation p.C360G 0.36 deleterious(0) probably_damaging(0.999) TCGA-DA-A95W-06 19 41442051 41442051 C T CYP2B7P RNA 0.36 TCGA-DA-A95W-06 19 43674254 43674254 G A PSG5 Missense_Mutation p.P334L 0.40 deleterious_low_confidence(0.01) benign(0.021) TCGA-DA-A95W-06 19 48374684 48374684 C T SULT2A1 3'UTR 0.44 TCGA-DA-A95W-06 19 49005837 49005837 C T LMTK3 Missense_Mutation p.G245E 0.41 probably_damaging(0.999) TCGA-DA-A95W-06 19 49005838 49005838 C T LMTK3 Missense_Mutation p.G245R 0.41 probably_damaging(0.999) TCGA-DA-A95W-06 19 49878328 49878328 C T DKKL1 3'UTR 0.28 TCGA-DA-A95W-06 19 50398411 50398411 C T IL4I1 Silent p.R115R 0.55 TCGA-DA-A95W-06 19 5131301 5131301 C T KDM4B Silent p.P510P 0.22 TCGA-DA-A95W-06 19 52130974 52130974 G A SIGLEC5 Silent p.S341S 0.38 TCGA-DA-A95W-06 19 54783717 54783717 C T LILRB2 Missense_Mutation p.R95Q 0.54 tolerated(0.3) benign(0.031) TCGA-DA-A95W-06 19 5776316 5776316 C T CATSPERD Missense_Mutation p.P696S 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 19 758515 758515 C T MISP Silent p.P523P 0.41 TCGA-DA-A95W-06 19 9012536 9012536 C T MUC16 Splice_Site p.X12891_splice 0.35 TCGA-DA-A95W-06 19 9091483 9091483 C T MUC16 Missense_Mutation p.G111E 0.51 unknown(0) TCGA-DA-A95W-06 19 9324938 9324938 G A OR7D4 Silent p.T192T 0.36 TCGA-DA-A95W-06 19 9324939 9324939 G A OR7D4 Missense_Mutation p.T192I 0.37 tolerated(0.08) benign(0.05) TCGA-DA-A95W-06 19 9577428 9577428 C T ZNF560 Missense_Mutation p.R732Q 0.43 deleterious(0.04) benign(0.001) TCGA-DA-A95W-06 1 111690377 111690377 C T CEPT1 Missense_Mutation p.S14F 0.36 tolerated_low_confidence(0.12) benign(0) TCGA-DA-A95W-06 1 119964842 119964842 C T HSD3B2 Missense_Mutation p.R240W 0.35 deleterious(0.04) benign(0.008) TCGA-DA-A95W-06 1 12954854 12954854 C T PRAMEF10 Silent p.E143E 0.85 TCGA-DA-A95W-06 1 152732703 152732703 C T KPRP Silent p.S213S 0.44 TCGA-DA-A95W-06 1 157650538 157650538 C T FCRL3 Silent p.P660P 0.42 TCGA-DA-A95W-06 1 158435838 158435838 G A OR10K1 Missense_Mutation p.V163I 0.43 tolerated(0.55) benign(0.045) TCGA-DA-A95W-06 1 158654992 158654992 A G SPTA1 Missense_Mutation p.V57A 0.49 tolerated(0.34) probably_damaging(0.999) TCGA-DA-A95W-06 1 158736063 158736063 G A OR6N1 Missense_Mutation p.T137I 0.45 deleterious(0.01) possibly_damaging(0.862) TCGA-DA-A95W-06 1 167095211 167095211 G A DUSP27 Silent p.E281E 0.31 TCGA-DA-A95W-06 1 196712650 196712650 C T CFH Missense_Mutation p.P1068S 0.32 tolerated(0.33) benign(0.023) TCGA-DA-A95W-06 1 231344734 231344734 A T TRIM67 Missense_Mutation p.I621F 0.45 deleterious(0) probably_damaging(0.99) TCGA-DA-A95W-06 1 243437890 243437890 C T SDCCAG8 Missense_Mutation p.L118F 0.35 deleterious(0.03) benign(0.299) TCGA-DA-A95W-06 1 248402419 248402419 C T OR2M4 Silent p.L63L 0.44 TCGA-DA-A95W-06 1 43205511 43205511 C T CLDN19 Splice_Site p.X75_splice 0.37 TCGA-DA-A95W-06 1 43675658 43675658 C T WDR65 Missense_Mutation p.T667I 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.702) TCGA-DA-A95W-06 1 52703381 52703381 C T ZFYVE9 Missense_Mutation p.P98S 0.46 tolerated_low_confidence(0.13) benign(0.003) TCGA-DA-A95W-06 1 53558445 53558445 C T SLC1A7 Missense_Mutation p.G271D 0.47 deleterious(0) probably_damaging(0.99) TCGA-DA-A95W-06 1 5934579 5934579 G A NPHP4 Silent p.V1061V 0.70 TCGA-DA-A95W-06 1 89652779 89652779 C T GBP4 Missense_Mutation p.E473K 0.39 tolerated(0.07) benign(0.122) TCGA-DA-A95W-06 20 18794554 18794554 C T SCP2D1 Missense_Mutation p.A32V 0.31 tolerated(0.12) benign(0.202) TCGA-DA-A95W-06 20 36869664 36869664 G A KIAA1755 Missense_Mutation p.P290L 0.46 tolerated(0.27) benign(0.037) TCGA-DA-A95W-06 20 3804868 3804868 A G AP5S1 Missense_Mutation p.H176R 0.41 deleterious(0) benign(0.382) TCGA-DA-A95W-06 20 40713377 40713377 C T PTPRT Missense_Mutation p.E1361K 0.39 tolerated(0.06) benign(0.089) TCGA-DA-A95W-06 20 5904223 5904223 G A CHGB Missense_Mutation p.G478E 0.33 tolerated(0.6) benign(0.168) TCGA-DA-A95W-06 21 37603015 37603015 G A DOPEY2 Missense_Mutation p.V645I 0.38 tolerated(0.33) benign(0.001) TCGA-DA-A95W-06 21 43833607 43833607 C T UBASH3A Silent p.F214F 0.44 TCGA-DA-A95W-06 21 46645283 46645283 C T ADARB1 3'UTR 0.50 TCGA-DA-A95W-06 22 23264816 23264816 G A IGLC7 Missense_Mutation p.E18K 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A95W-06 22 25627763 25627763 C T CRYBB2 3'UTR 0.50 TCGA-DA-A95W-06 22 31345759 31345759 T A MORC2 Missense_Mutation p.Q37L 0.48 deleterious(0) benign(0.232) TCGA-DA-A95W-06 22 33712106 33712106 C T LARGE Silent p.T472T 0.36 TCGA-DA-A95W-06 2 100170921 100170921 G A AFF3 Silent p.S1162S 0.41 TCGA-DA-A95W-06 2 10559985 10559985 C T HPCAL1 Silent p.F34F 0.39 TCGA-DA-A95W-06 2 130833023 130833023 C T POTEF Silent p.K674K 0.33 TCGA-DA-A95W-06 2 141108482 141108482 T A LRP1B Missense_Mutation p.M3926L 0.36 benign(0.008) TCGA-DA-A95W-06 2 152695749 152695749 C A CACNB4 Missense_Mutation p.D483Y 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-DA-A95W-06 2 167094745 167094745 C T SCN9A Silent p.K1209K 0.59 TCGA-DA-A95W-06 2 167162416 167162416 C T SCN9A Missense_Mutation p.G161E 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A95W-06 2 169764324 169764324 G A G6PC2 Missense_Mutation p.G268D 0.34 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 2 179393345 179393345 T A TTN Missense_Mutation p.Q35711H 0.35 TCGA-DA-A95W-06 2 179404848 179404848 C T TTN Missense_Mutation p.G32682E 0.38 TCGA-DA-A95W-06 2 179604087 179604087 G A TTN Missense_Mutation p.L4625F 0.26 TCGA-DA-A95W-06 2 207516537 207516537 C T DYTN 3'UTR 0.35 TCGA-DA-A95W-06 2 242795095 242795095 G A PDCD1 Silent p.S38S 0.44 TCGA-DA-A95W-06 2 242795096 242795096 G A PDCD1 Missense_Mutation p.S38F 0.44 tolerated(0.48) benign(0.007) TCGA-DA-A95W-06 2 26691306 26691306 C T OTOF Missense_Mutation p.E1354K 0.32 tolerated(0.18) possibly_damaging(0.593) TCGA-DA-A95W-06 2 26691307 26691307 C T OTOF Silent p.L1353L 0.32 TCGA-DA-A95W-06 2 30966279 30966279 C T CAPN13 Missense_Mutation p.R472Q 0.46 tolerated(0.11) possibly_damaging(0.547) TCGA-DA-A95W-06 2 79363173 79363173 G A REG1P RNA 0.48 TCGA-DA-A95W-06 3 122632723 122632723 C T SEMA5B Missense_Mutation p.G759D 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 3 122632724 122632724 C T SEMA5B Missense_Mutation p.G759S 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95W-06 3 126748839 126748839 C T PLXNA1 Nonsense_Mutation p.Q1665* 0.35 TCGA-DA-A95W-06 3 145794574 145794574 G A PLOD2 Missense_Mutation p.P558S 0.54 deleterious(0.01) possibly_damaging(0.836) TCGA-DA-A95W-06 3 160804428 160804428 G A B3GALNT1 Missense_Mutation p.P39S 0.30 tolerated(0.95) benign(0.01) TCGA-DA-A95W-06 3 186272303 186272303 G A TBCCD1 Silent p.D428D 0.45 TCGA-DA-A95W-06 3 38770131 38770131 C T SCN10A Missense_Mutation p.G848R 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A95W-06 3 56053006 56053006 C T ERC2 Silent p.L565L 0.42 TCGA-DA-A95W-06 3 65464288 65464288 C T MAGI1 Missense_Mutation p.E246K 0.49 tolerated(0.56) possibly_damaging(0.842) TCGA-DA-A95W-06 3 89528657 89528657 C T EPHA3 3'UTR 0.42 TCGA-DA-A95W-06 4 106766699 106766699 C T GSTCD Missense_Mutation p.P623S 0.38 deleterious(0) probably_damaging(0.998) TCGA-DA-A95W-06 4 111539619 111539619 A G PITX2 Missense_Mutation p.S213P 0.27 tolerated(0.1) probably_damaging(0.989) TCGA-DA-A95W-06 4 120212395 120212396 - A USP53 Frame_Shift_Ins p.N778Kfs*11 0.38 TCGA-DA-A95W-06 4 126240175 126240175 G A FAT4 Missense_Mutation p.G870E 0.44 possibly_damaging(0.854) TCGA-DA-A95W-06 4 160252641 160252641 C T RAPGEF2 Missense_Mutation p.P348L 0.35 tolerated(0.1) benign(0.098) TCGA-DA-A95W-06 4 164440553 164440553 A G TMA16 Missense_Mutation p.I167V 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-DA-A95W-06 4 186379464 186379464 G A CCDC110 Silent p.T759T 0.47 TCGA-DA-A95W-06 4 189012943 189012943 T G TRIML2 Missense_Mutation p.T250P 0.47 deleterious(0.01) possibly_damaging(0.83) TCGA-DA-A95W-06 4 23815930 23815930 G A PPARGC1A Silent p.S392S 0.30 TCGA-DA-A95W-06 4 25262178 25262178 G A PI4K2B Missense_Mutation p.E315K 0.38 deleterious(0.04) benign(0.104) TCGA-DA-A95W-06 4 65145647 65145647 G A TECRL 3'UTR 0.50 TCGA-DA-A95W-06 4 71509437 71509437 C T ENAM Missense_Mutation p.S765F 0.40 deleterious(0.02) probably_damaging(0.985) TCGA-DA-A95W-06 4 74863265 74863265 C T CXCL5 3'UTR 0.49 TCGA-DA-A95W-06 5 121759267 121759267 C T SNCAIP Nonsense_Mutation p.Q279* 0.41 TCGA-DA-A95W-06 5 131996001 131996001 A G IL13 3'UTR 0.54 TCGA-DA-A95W-06 5 131996002 131996002 G A IL13 3'UTR 0.57 TCGA-DA-A95W-06 5 137765648 137765648 C T KDM3B Silent p.L1629L 0.24 TCGA-DA-A95W-06 5 140571952 140571952 G A PCDHB10 5'UTR 0.36 TCGA-DA-A95W-06 5 140603178 140603178 C T PCDHB14 Missense_Mutation p.S34F 0.44 tolerated_low_confidence(0.09) benign(0.303) TCGA-DA-A95W-06 5 14610517 14610517 G A FAM105A 3'UTR 0.29 TCGA-DA-A95W-06 5 154396837 154396837 G A KIF4B Missense_Mutation p.G1140S 0.43 tolerated_low_confidence(0.25) benign(0.024) TCGA-DA-A95W-06 5 35873587 35873587 G A IL7R Silent p.V181V 0.37 TCGA-DA-A95W-06 5 39126174 39126174 C T FYB Silent p.K667K 0.37 TCGA-DA-A95W-06 5 40835319 40835319 G A RPL37 5'UTR 0.44 TCGA-DA-A95W-06 5 5303842 5303842 C T ADAMTS16 Missense_Mutation p.P1050L 0.33 tolerated(0.47) benign(0.001) TCGA-DA-A95W-06 5 5463799 5463799 C T KIAA0947 Missense_Mutation p.S1451F 0.41 deleterious(0) possibly_damaging(0.727) TCGA-DA-A95W-06 5 66441066 66441066 G C MAST4 Missense_Mutation p.G985R 0.30 possibly_damaging(0.765) TCGA-DA-A95W-06 5 6748698 6748698 C T PAPD7 Silent p.A277A 0.30 TCGA-DA-A95W-06 6 135787413 135787413 G A AHI1 Silent p.V96V 0.77 TCGA-DA-A95W-06 6 161012121 161012121 C T LPA Silent p.R1214R 0.82 TCGA-DA-A95W-06 6 30121759 30121759 G A TRIM10 Missense_Mutation p.S478F 0.34 tolerated(0.11) possibly_damaging(0.757) TCGA-DA-A95W-06 6 32713600 32713600 C T HLA-DQA2 Missense_Mutation p.P122S 0.38 tolerated(0.06) benign(0.323) TCGA-DA-A95W-06 6 34835381 34835381 G A UHRF1BP1 Missense_Mutation p.G1236R 0.43 tolerated(0.06) possibly_damaging(0.796) TCGA-DA-A95W-06 6 350764 350764 T C DUSP22 Intron 0.26 TCGA-DA-A95W-06 6 43306328 43306328 G A ZNF318 Missense_Mutation p.P1803L 0.39 benign(0.009) TCGA-DA-A95W-06 6 43306329 43306329 G A ZNF318 Missense_Mutation p.P1803S 0.42 benign(0.015) TCGA-DA-A95W-06 6 4954133 4954133 T C CDYL Missense_Mutation p.V493A 0.50 deleterious(0) possibly_damaging(0.887) TCGA-DA-A95W-06 6 62757809 62757809 T C KHDRBS2 Missense_Mutation p.K104E 0.78 deleterious(0) probably_damaging(0.996) TCGA-DA-A95W-06 6 76551007 76551007 G A MYO6 Missense_Mutation p.R243K 0.73 deleterious(0) unknown(0) TCGA-DA-A95W-06 6 85447026 85447026 G A TBX18 Missense_Mutation p.H401Y 0.70 tolerated(0.11) possibly_damaging(0.775) TCGA-DA-A95W-06 6 93979219 93979219 C T EPHA7 Missense_Mutation p.E537K 0.77 tolerated(0.09) possibly_damaging(0.499) TCGA-DA-A95W-06 7 113522328 113522328 G A PPP1R3A Missense_Mutation p.P277L 0.25 tolerated(0.14) benign(0) TCGA-DA-A95W-06 7 116774202 116774202 C T ST7 Silent p.P222P 0.17 TCGA-DA-A95W-06 7 116774203 116774203 C T ST7 Silent p.L223L 0.18 TCGA-DA-A95W-06 7 122091463 122091463 G A CADPS2 Silent p.L751L 0.22 TCGA-DA-A95W-06 7 126173694 126173694 G A GRM8 Missense_Mutation p.S581F 0.18 deleterious(0) probably_damaging(0.998) TCGA-DA-A95W-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.62 deleterious(0) probably_damaging(0.967) TCGA-DA-A95W-06 7 143047483 143047483 G A CLCN1 Missense_Mutation p.E808K 0.80 tolerated(0.12) benign(0.01) TCGA-DA-A95W-06 7 149467598 149467598 C T ZNF467 Missense_Mutation p.E28K 0.62 deleterious(0.01) benign(0.146) TCGA-DA-A95W-06 7 21788344 21788344 G A DNAH11 Missense_Mutation p.G2893E 0.30 probably_damaging(0.949) TCGA-DA-A95W-06 7 36492222 36492222 C T ANLN 3'UTR 0.54 TCGA-DA-A95W-06 7 54617801 54617801 G A VSTM2A Missense_Mutation p.R191Q 0.20 tolerated(0.12) benign(0.003) TCGA-DA-A95W-06 7 82582446 82582446 G A PCLO Missense_Mutation p.S2608L 0.26 unknown(0) TCGA-DA-A95W-06 7 99778190 99778190 C T STAG3 Missense_Mutation p.P4L 0.30 deleterious_low_confidence(0) benign(0.002) TCGA-DA-A95W-06 8 114031325 114031325 C T CSMD3 Missense_Mutation p.R334Q 0.40 deleterious(0.04) possibly_damaging(0.906) TCGA-DA-A95W-06 8 144398257 144398257 C T TOP1MT Missense_Mutation p.R457Q 0.62 tolerated(0.07) possibly_damaging(0.621) TCGA-DA-A95W-06 8 144464074 144464074 C T RHPN1 Missense_Mutation p.A578V 0.09 tolerated(1) benign(0.006) TCGA-DA-A95W-06 8 26722568 26722568 G A ADRA1A 5'UTR 0.53 TCGA-DA-A95W-06 8 37730469 37730469 G A RAB11FIP1 Silent p.L617L 0.15 TCGA-DA-A95W-06 8 8176002 8176002 C T SGK223 Missense_Mutation p.G1295S 0.17 probably_damaging(0.999) TCGA-DA-A95W-06 8 88885204 88885204 C T DCAF4L2 Silent p.V332V 0.56 TCGA-DA-A95W-06 9 127933364 127933364 C T PPP6C Silent p.Q94Q 0.39 TCGA-DA-A95W-06 9 136323177 136323177 G A ADAMTS13 Missense_Mutation p.M1346I 0.41 tolerated(0.2) benign(0.01) TCGA-DA-A95W-06 9 33468146 33468146 G A NOL6 Intron 0.49 TCGA-DA-A95W-06 9 35609242 35609242 C T TESK1 Missense_Mutation p.P462S 0.39 tolerated(0.16) possibly_damaging(0.65) TCGA-DA-A95W-06 9 3937121 3937121 G A GLIS3 Silent p.G593G 0.42 TCGA-DA-A95W-06 9 85863159 85863159 C T FRMD3 Missense_Mutation p.E490K 0.46 tolerated(0.54) possibly_damaging(0.596) TCGA-DA-A95W-06 X 102338566 102338566 C T NXF3 Missense_Mutation p.E136K 0.85 tolerated(1) benign(0.004) TCGA-DA-A95W-06 X 111090442 111090442 C T TRPC5 Missense_Mutation p.G534R 0.82 deleterious(0) probably_damaging(0.998) TCGA-DA-A95W-06 X 135618183 135618183 G A VGLL1 Missense_Mutation p.E2K 0.86 deleterious(0) possibly_damaging(0.457) TCGA-DA-A95W-06 X 140926216 140926216 C T MAGEC3 Nonsense_Mutation p.Q39* 0.86 TCGA-DA-A95W-06 X 149867761 149867761 C T MTMR1 Silent p.S80S 0.91 TCGA-DA-A95W-06 X 46915555 46915555 G A JADE3 Silent p.Q505Q 0.86 TCGA-DA-A95W-06 X 69282986 69282986 G A OTUD6A Missense_Mutation p.M204I 0.95 tolerated(0.2) benign(0.026) TCGA-DA-A95W-06 X 99936249 99936249 G A SYTL4 Silent p.T511T 0.96 TCGA-DA-A95X-06 10 100159967 100159967 G A PYROXD2 Silent p.P121P 0.49 TCGA-DA-A95X-06 10 106849586 106849586 C T SORCS3 Missense_Mutation p.T361I 0.24 tolerated(0.28) benign(0.009) TCGA-DA-A95X-06 10 116057048 116057048 C T AFAP1L2 Silent p.K746K 0.47 TCGA-DA-A95X-06 10 12288275 12288275 A G CDC123 Missense_Mutation p.Q282R 0.39 tolerated(0.45) benign(0.259) TCGA-DA-A95X-06 10 124045652 124045652 G A BTBD16 Missense_Mutation p.E92K 0.34 deleterious(0) possibly_damaging(0.713) TCGA-DA-A95X-06 10 124594553 124594553 C T CUZD1 Missense_Mutation p.E351K 0.42 tolerated(0.75) benign(0.186) TCGA-DA-A95X-06 10 125516822 125516822 G A CPXM2 Silent p.S608S 0.50 TCGA-DA-A95X-06 10 125769726 125769726 G A CHST15 Missense_Mutation p.P542L 0.43 deleterious(0) probably_damaging(0.997) TCGA-DA-A95X-06 10 127569241 127569243 ACG CT DHX32 Frame_Shift_Del p.R51Sfs*6 0.28 TCGA-DA-A95X-06 10 12856298 12856298 C T CAMK1D Missense_Mutation p.S249F 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 10 128840961 128840961 T C DOCK1 Silent p.L674L 0.41 TCGA-DA-A95X-06 10 129242467 129242467 C T DOCK1 Silent p.S1758S 0.43 TCGA-DA-A95X-06 10 28101538 28101538 A C ARMC4 Missense_Mutation p.V1013G 0.40 deleterious(0) probably_damaging(0.931) TCGA-DA-A95X-06 10 30316609 30316609 G A KIAA1462 Missense_Mutation p.P823L 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 10 43316064 43316064 G A BMS1 Missense_Mutation p.E960K 0.30 tolerated(0.13) benign(0.045) TCGA-DA-A95X-06 10 48414252 48414252 C T GDF2 Missense_Mutation p.E206K 0.40 deleterious(0.05) benign(0.331) TCGA-DA-A95X-06 10 49446068 49446068 G A FRMPD2 Missense_Mutation p.P296L 0.40 tolerated(0.07) benign(0.404) TCGA-DA-A95X-06 10 49446069 49446069 G A FRMPD2 Missense_Mutation p.P296S 0.42 tolerated(0.32) benign(0.015) TCGA-DA-A95X-06 10 50531176 50531176 A G C10orf71 Missense_Mutation p.R196G 0.37 deleterious(0) probably_damaging(0.994) TCGA-DA-A95X-06 10 50916576 50916576 C T C10orf53 Silent p.F129F 0.39 TCGA-DA-A95X-06 10 5254636 5254636 G A AKR1C4 Missense_Mutation p.D210N 0.48 tolerated(0.06) benign(0.159) TCGA-DA-A95X-06 10 61834653 61834653 C T ANK3 Missense_Mutation p.E1996K 0.45 probably_damaging(0.956) TCGA-DA-A95X-06 10 62038834 62038834 C T ANK3 Missense_Mutation p.E97K 0.38 benign(0.314) TCGA-DA-A95X-06 10 64952836 64952836 G A JMJD1C Missense_Mutation p.P1980S 0.32 tolerated(0.74) benign(0.005) TCGA-DA-A95X-06 10 71332516 71332516 C T NEUROG3 Missense_Mutation p.R95Q 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 10 71712648 71712648 G A COL13A1 Missense_Mutation p.G679E 0.51 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 10 72536984 72536984 G A TBATA Silent p.H205H 0.46 TCGA-DA-A95X-06 10 72536985 72536985 T A TBATA Missense_Mutation p.H205L 0.46 tolerated(0.11) benign(0.138) TCGA-DA-A95X-06 10 73567413 73567413 C T CDH23 Missense_Mutation p.P577S 0.19 tolerated(0.71) benign(0.063) TCGA-DA-A95X-06 10 85992345 85992345 C T LRIT1 Missense_Mutation p.E404K 0.47 tolerated(0.61) benign(0.003) TCGA-DA-A95X-06 10 91359141 91359141 T C PANK1 Missense_Mutation p.N393S 0.39 tolerated(0.08) benign(0.002) TCGA-DA-A95X-06 10 95400279 95400279 T C PDE6C Missense_Mutation p.F568L 0.38 tolerated(0.22) probably_damaging(0.999) TCGA-DA-A95X-06 10 95719268 95719268 C T PIPSL RNA 0.44 TCGA-DA-A95X-06 10 96030337 96030337 G A PLCE1 Missense_Mutation p.R1495Q 0.42 tolerated(0.13) probably_damaging(0.999) TCGA-DA-A95X-06 10 98130024 98130024 G A TLL2 Missense_Mutation p.S904F 0.50 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 10 99350194 99350194 G A C10orf62 Silent p.K180K 0.40 TCGA-DA-A95X-06 11 100922250 100922250 A C PGR Silent p.S754S 0.42 TCGA-DA-A95X-06 11 101954072 101954072 C T C11orf70 3'UTR 0.53 TCGA-DA-A95X-06 11 103191928 103191928 C T DYNC2H1 Missense_Mutation p.P3973S 0.33 benign(0.009) TCGA-DA-A95X-06 11 110477325 110477325 G A ARHGAP20 Silent p.I308I 0.39 TCGA-DA-A95X-06 11 1154239 1154239 G A MUC5AC Missense_Mutation p.D29N 0.33 tolerated(0.28) possibly_damaging(0.55) TCGA-DA-A95X-06 11 117261495 117261495 C T CEP164 Missense_Mutation p.S646F 0.37 deleterious(0.05) possibly_damaging(0.891) TCGA-DA-A95X-06 11 117306408 117306408 A G DSCAML1 Missense_Mutation p.F1670L 0.43 tolerated(0.45) benign(0.003) TCGA-DA-A95X-06 11 117975427 117975427 C T TMPRSS4 Missense_Mutation p.S111F 0.47 deleterious(0.02) benign(0.112) TCGA-DA-A95X-06 11 118390699 118390699 C T KMT2A Silent p.F3783F 0.57 TCGA-DA-A95X-06 11 119991309 119991309 C T TRIM29 Silent p.K500K 0.52 TCGA-DA-A95X-06 11 123900690 123900690 C T OR10G8 Missense_Mutation p.R121C 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-DA-A95X-06 11 123900731 123900731 G A OR10G8 Missense_Mutation p.M134I 0.35 tolerated(1) benign(0.009) TCGA-DA-A95X-06 11 124189782 124189782 G A OR8D2 Silent p.F104F 0.47 TCGA-DA-A95X-06 11 125891226 125891226 G A CDON Missense_Mutation p.S89F 0.47 deleterious(0.01) possibly_damaging(0.482) TCGA-DA-A95X-06 11 1275529 1275529 C T MUC5B Missense_Mutation p.S5142F 0.37 unknown(0) TCGA-DA-A95X-06 11 128350137 128350137 G A ETS1 Missense_Mutation p.L358F 0.28 tolerated(0.15) benign(0.225) TCGA-DA-A95X-06 11 128680657 128680657 T A FLI1 Missense_Mutation p.M378K 0.58 deleterious(0.02) benign(0.071) TCGA-DA-A95X-06 11 128680693 128680693 C T FLI1 Missense_Mutation p.S390F 0.29 deleterious(0) possibly_damaging(0.905) TCGA-DA-A95X-06 11 14508048 14508048 G A COPB1 Silent p.V234V 0.34 TCGA-DA-A95X-06 11 17419278 17419278 C G ABCC8 Missense_Mutation p.E1274Q 0.41 tolerated(0.56) benign(0.029) TCGA-DA-A95X-06 11 18428738 18428758 TGTGAAGGTGACTCTGACTTC - LDHA In_Frame_Del p.V333_S339del 0.30 TCGA-DA-A95X-06 11 20067201 20067201 C T NAV2 Missense_Mutation p.S1319F 0.30 deleterious(0) probably_damaging(0.997) TCGA-DA-A95X-06 11 22242692 22242692 T C ANO5 Missense_Mutation p.I77T 0.36 tolerated(0.34) benign(0.011) TCGA-DA-A95X-06 11 27077044 27077044 G A BBOX1 Missense_Mutation p.D23N 0.40 deleterious(0.03) benign(0.013) TCGA-DA-A95X-06 11 30937102 30937102 T A DCDC1 Missense_Mutation p.K1203N 0.55 tolerated(0.25) possibly_damaging(0.607) TCGA-DA-A95X-06 11 31086616 31086616 C T DCDC1 Missense_Mutation p.G795S 0.26 tolerated_low_confidence(0.18) benign(0.224) TCGA-DA-A95X-06 11 31128392 31128392 G A DCDC1 Missense_Mutation p.S568L 0.48 tolerated(0.21) benign(0.001) TCGA-DA-A95X-06 11 33738989 33738989 A G CD59 Silent p.P32P 0.44 TCGA-DA-A95X-06 11 43283918 43283918 G A HNRNPKP3 RNA 0.59 TCGA-DA-A95X-06 11 48238691 48238691 C T OR4B1 Silent p.I110I 0.36 TCGA-DA-A95X-06 11 49974589 49974589 C T OR4C13 Silent p.C205C 0.42 TCGA-DA-A95X-06 11 5080822 5080822 G A OR52E2 Silent p.S12S 0.41 TCGA-DA-A95X-06 11 5254274 5254274 C T HBD Missense_Mutation p.E122K 0.32 tolerated(0.08) benign(0.015) TCGA-DA-A95X-06 11 5364728 5364728 G A OR51B5 Silent p.P9P 0.48 TCGA-DA-A95X-06 11 5462427 5462427 G A OR51I1 Silent p.I106I 0.49 TCGA-DA-A95X-06 11 55111097 55111097 C T OR4A16 Missense_Mutation p.L141F 0.37 deleterious_low_confidence(0.04) benign(0.151) TCGA-DA-A95X-06 11 5529237 5529237 G A UBQLN3 Missense_Mutation p.P518S 0.37 deleterious(0.01) benign(0.203) TCGA-DA-A95X-06 11 55682028 55682028 C T OR5W2 Missense_Mutation p.D11N 0.39 deleterious(0.01) benign(0.003) TCGA-DA-A95X-06 11 55890572 55890572 G A OR8H3 Missense_Mutation p.V242I 0.39 deleterious(0) benign(0.067) TCGA-DA-A95X-06 11 56258050 56258050 G A OR5M8 Missense_Mutation p.S266F 0.41 deleterious(0) probably_damaging(0.979) TCGA-DA-A95X-06 11 56431785 56431785 C T OR5AR1 Silent p.F208F 0.52 TCGA-DA-A95X-06 11 57156105 57156105 G A PRG2 Missense_Mutation p.S148F 0.45 tolerated(0.7) benign(0.156) TCGA-DA-A95X-06 11 57995816 57995816 C T OR10Q1 Missense_Mutation p.E178K 0.32 tolerated(0.08) benign(0.304) TCGA-DA-A95X-06 11 59420374 59420374 G A PATL1 Silent p.V413V 0.41 TCGA-DA-A95X-06 11 60781397 60781397 C T CD6 Missense_Mutation p.P433L 0.35 deleterious(0) probably_damaging(0.911) TCGA-DA-A95X-06 11 61118480 61118480 T A CYB561A3 Missense_Mutation p.I247F 0.50 tolerated(0.07) benign(0.149) TCGA-DA-A95X-06 11 62284380 62284380 C T AHNAK Missense_Mutation p.E5837K 0.43 probably_damaging(0.997) TCGA-DA-A95X-06 11 6292459 6292459 C T CCKBR Silent p.L344L 0.41 TCGA-DA-A95X-06 11 64417929 64417929 C T NRXN2 Missense_Mutation p.D1034N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95X-06 11 65793179 65793179 G A CATSPER1 Silent p.H224H 0.48 TCGA-DA-A95X-06 11 66102669 66102669 G A RIN1 Missense_Mutation p.P201S 0.30 tolerated(0.4) benign(0.219) TCGA-DA-A95X-06 11 66328751 66328751 G A CTSF 3'Flank 0.60 TCGA-DA-A95X-06 11 68579994 68579994 G A CPT1A Silent p.I64I 0.38 TCGA-DA-A95X-06 11 6867740 6867740 C T OR10A5 Missense_Mutation p.S276L 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 11 6977424 6977424 C T ZNF215 Missense_Mutation p.P406S 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A95X-06 11 70331828 70331828 C T SHANK2 Missense_Mutation p.G1525R 0.39 deleterious(0) probably_damaging(0.953) TCGA-DA-A95X-06 11 7507151 7507151 C T OLFML1 Silent p.F15F 0.33 TCGA-DA-A95X-06 11 76873259 76873259 G A MYO7A Silent p.L479L 0.53 TCGA-DA-A95X-06 11 7949424 7949424 G A OR10A6 Silent p.P262P 0.41 TCGA-DA-A95X-06 11 7950093 7950093 C T OR10A6 Silent p.L39L 0.43 TCGA-DA-A95X-06 11 8060341 8060341 G A TUB 5'UTR 0.44 TCGA-DA-A95X-06 11 84028138 84028138 C T DLG2 Intron 0.36 TCGA-DA-A95X-06 12 100482854 100482854 G C UHRF1BP1L Missense_Mutation p.S287C 0.58 deleterious(0) possibly_damaging(0.678) TCGA-DA-A95X-06 12 105460411 105460411 G A ALDH1L2 Missense_Mutation p.P211S 0.57 deleterious_low_confidence(0) benign(0.164) TCGA-DA-A95X-06 12 108686177 108686177 G A CMKLR1 Missense_Mutation p.S188F 0.63 tolerated(0.71) benign(0.063) TCGA-DA-A95X-06 12 110024592 110024592 C T MVK Missense_Mutation p.S222L 0.82 deleterious(0.03) benign(0.032) TCGA-DA-A95X-06 12 110777456 110777456 C T ATP2A2 Missense_Mutation p.A564V 0.59 deleterious(0) probably_damaging(0.985) TCGA-DA-A95X-06 12 110777457 110777457 C T ATP2A2 Silent p.A564A 0.57 TCGA-DA-A95X-06 12 111733203 111733203 C T CUX2 Silent p.V209V 0.75 TCGA-DA-A95X-06 12 111746128 111746128 C T CUX2 Silent p.S383S 0.76 TCGA-DA-A95X-06 12 112159511 112159511 C T ACAD10 Silent p.V374V 0.60 TCGA-DA-A95X-06 12 118693402 118693402 G A TAOK3 5'UTR 0.79 TCGA-DA-A95X-06 12 119631625 119631625 G A HSPB8 Missense_Mutation p.E185K 0.70 deleterious_low_confidence(0.04) benign(0.078) TCGA-DA-A95X-06 12 124118238 124118238 C T EIF2B1 5'UTR 0.70 TCGA-DA-A95X-06 12 124270322 124270322 G A DNAH10 Silent p.V359V 0.78 TCGA-DA-A95X-06 12 124270323 124270323 G T DNAH10 Missense_Mutation p.V360F 0.78 possibly_damaging(0.853) TCGA-DA-A95X-06 12 14706210 14706210 G A PLBD1 Silent p.I84I 0.82 TCGA-DA-A95X-06 12 18876251 18876251 C T PLCZ1 Missense_Mutation p.E121K 0.69 deleterious(0.02) possibly_damaging(0.804) TCGA-DA-A95X-06 12 48919870 48919870 C A OR8S1 Silent p.G152G 0.21 TCGA-DA-A95X-06 12 51901319 51901319 C A SLC4A8 3'UTR 0.49 TCGA-DA-A95X-06 12 52629089 52629089 G A KRT7 Missense_Mutation p.G159R 0.71 tolerated(1) benign(0.376) TCGA-DA-A95X-06 12 54912482 54912482 C T NCKAP1L Silent p.F462F 0.71 TCGA-DA-A95X-06 12 55820471 55820471 C T OR6C76 Missense_Mutation p.S145F 0.63 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-DA-A95X-06 12 57921981 57921981 T C MBD6 Missense_Mutation p.S820P 0.84 tolerated_low_confidence(0.49) unknown(0) TCGA-DA-A95X-06 12 71977747 71977747 T A LGR5 Missense_Mutation p.F653I 0.78 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A95X-06 12 72969044 72969044 G A TRHDE Missense_Mutation p.R669K 0.76 tolerated(0.78) benign(0.002) TCGA-DA-A95X-06 12 76424339 76424339 G A PHLDA1 Missense_Mutation p.R395C 0.52 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95X-06 12 76424340 76424340 G A PHLDA1 Silent p.L394L 0.52 TCGA-DA-A95X-06 12 81762906 81762906 T A PPFIA2 Missense_Mutation p.N445I 0.83 deleterious(0) probably_damaging(0.984) TCGA-DA-A95X-06 12 88379820 88379820 G A C12orf50 Silent p.A311A 0.64 TCGA-DA-A95X-06 13 36699997 36699997 C T DCLK1 Missense_Mutation p.R93Q 0.81 deleterious(0) unknown(0) TCGA-DA-A95X-06 13 39438741 39438741 C T FREM2 Nonsense_Mutation p.Q2661* 0.78 TCGA-DA-A95X-06 13 77672008 77672008 G A MYCBP2 Missense_Mutation p.S3056L 0.68 probably_damaging(0.972) TCGA-DA-A95X-06 14 104206360 104206360 G T PPP1R13B Missense_Mutation p.S798Y 0.35 deleterious(0.01) benign(0.187) TCGA-DA-A95X-06 14 104641441 104641441 C T KIF26A Silent p.C772C 0.32 TCGA-DA-A95X-06 14 106691905 106691905 G A IGHV3-21 Missense_Mutation p.S40F 0.40 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-DA-A95X-06 14 106725414 106725414 G A IGHV3-23 Silent p.F46F 0.17 TCGA-DA-A95X-06 14 19563653 19563653 C T POTEG Intron 0.20 TCGA-DA-A95X-06 14 20216494 20216494 G A OR4Q3 Missense_Mutation p.R303K 0.28 tolerated(0.34) benign(0.003) TCGA-DA-A95X-06 14 20295885 20295885 C T OR4N2 Missense_Mutation p.S93F 0.20 deleterious(0) probably_damaging(0.95) TCGA-DA-A95X-06 14 21490297 21490297 C T NDRG2 Missense_Mutation p.E90K 0.45 deleterious(0.01) possibly_damaging(0.541) TCGA-DA-A95X-06 14 22309432 22309432 C T TRAV12-1 Missense_Mutation p.S3F 0.33 deleterious(0) unknown(0) TCGA-DA-A95X-06 14 22521235 22521235 G A TRAV21 Missense_Mutation p.D86N 0.33 tolerated(1) benign(0.314) TCGA-DA-A95X-06 14 23818598 23818598 G A SLC22A17 Silent p.L137L 0.44 TCGA-DA-A95X-06 14 23826626 23826626 G A EFS Missense_Mutation p.P499S 0.38 tolerated(0.11) possibly_damaging(0.515) TCGA-DA-A95X-06 14 23895187 23895187 C T MYH7 Silent p.G716G 0.28 TCGA-DA-A95X-06 14 24708025 24708025 C T GMPR2 3'UTR 0.64 TCGA-DA-A95X-06 14 24787774 24787774 C T ADCY4 Missense_Mutation p.V1028M 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 14 50844986 50844986 G A CDKL1 Intron 0.44 TCGA-DA-A95X-06 14 53560154 53560154 T C DDHD1 Missense_Mutation p.S341G 0.34 deleterious(0.01) benign(0.183) TCGA-DA-A95X-06 14 54903125 54903125 A G CNIH1 Missense_Mutation p.Y38H 0.45 tolerated(0.15) probably_damaging(0.956) TCGA-DA-A95X-06 14 60213017 60213017 C T RTN1 Missense_Mutation p.E142K 0.35 tolerated(0.09) benign(0.063) TCGA-DA-A95X-06 14 60903633 60903633 G A C14orf39 Missense_Mutation p.S565L 0.39 tolerated(0.13) unknown(0) TCGA-DA-A95X-06 14 63269203 63269203 C T KCNH5 Missense_Mutation p.D556N 0.32 deleterious(0) probably_damaging(0.932) TCGA-DA-A95X-06 14 63417164 63417164 C A KCNH5 Silent p.L352L 0.31 TCGA-DA-A95X-06 14 63417165 63417165 A C KCNH5 Missense_Mutation p.L352R 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 14 73409774 73409774 C T DCAF4 Silent p.A168A 0.35 TCGA-DA-A95X-06 14 75580946 75580946 G A NEK9 Missense_Mutation p.S278F 0.25 deleterious(0) probably_damaging(0.988) TCGA-DA-A95X-06 14 77873966 77873966 G A NOXRED1 Silent p.I124I 0.44 TCGA-DA-A95X-06 14 81743935 81743935 C T STON2 Missense_Mutation p.D574N 0.50 deleterious(0.02) probably_damaging(0.991) TCGA-DA-A95X-06 14 92055979 92055979 G A CATSPERB Missense_Mutation p.P952L 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 14 92136193 92136193 G A CATSPERB Missense_Mutation p.P418S 0.42 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 14 92264171 92264171 G A TC2N Silent p.P271P 0.37 TCGA-DA-A95X-06 14 93118993 93118993 C T RIN3 Silent p.S533S 0.33 TCGA-DA-A95X-06 14 94731215 94731215 G A PPP4R4 Missense_Mutation p.E710K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95X-06 14 94741789 94741789 G A PPP4R4 Missense_Mutation p.R843H 0.45 deleterious_low_confidence(0.01) benign(0.034) TCGA-DA-A95X-06 14 94942603 94942603 C T SERPINA9 5'Flank 0.38 TCGA-DA-A95X-06 14 95054173 95054173 C T SERPINA5 Silent p.F158F 0.44 TCGA-DA-A95X-06 15 22963822 22963822 C T CYFIP1 Missense_Mutation p.S779F 0.36 deleterious(0) probably_damaging(0.989) TCGA-DA-A95X-06 15 23931732 23931732 C A NDN Missense_Mutation p.W211C 0.20 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 15 23931733 23931733 C T NDN Nonsense_Mutation p.W211* 0.20 TCGA-DA-A95X-06 15 25207281 25207281 G A SNURF Missense_Mutation p.R12Q 0.26 tolerated_low_confidence(0.35) benign(0.041) TCGA-DA-A95X-06 15 25425572 25425572 C T SNORD115-6 5'Flank 0.39 TCGA-DA-A95X-06 15 25479347 25479347 C T SNORD115-33 3'Flank 0.39 TCGA-DA-A95X-06 15 28465655 28465655 C T HERC2 Missense_Mutation p.E1930K 0.47 possibly_damaging(0.908) TCGA-DA-A95X-06 15 39887666 39887666 C T THBS1 3'UTR 0.59 TCGA-DA-A95X-06 15 44876027 44876027 T C SPG11 Missense_Mutation p.R1951G 0.27 tolerated(0.2) benign(0.001) TCGA-DA-A95X-06 15 45386440 45386440 G A DUOX2 Missense_Mutation p.P1519S 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 15 48707883 48707883 G A FBN1 Missense_Mutation p.P2634L 0.40 probably_damaging(0.971) TCGA-DA-A95X-06 15 50733627 50733627 A C USP8 Silent p.L62L 0.39 TCGA-DA-A95X-06 15 53994503 53994503 G A WDR72 Missense_Mutation p.S466L 0.36 deleterious(0.01) possibly_damaging(0.794) TCGA-DA-A95X-06 15 58465346 58465346 G T AQP9 Silent p.V106V 0.34 TCGA-DA-A95X-06 15 59911486 59911486 C T GCNT3 Missense_Mutation p.P350L 0.38 tolerated(0.29) benign(0.102) TCGA-DA-A95X-06 15 64365028 64365028 G A FAM96A 3'UTR 0.42 TCGA-DA-A95X-06 15 64424071 64424071 C T SNX1 Missense_Mutation p.R401C 0.43 deleterious(0.02) probably_damaging(0.993) TCGA-DA-A95X-06 15 65496688 65496688 C T CILP Silent p.K279K 0.33 TCGA-DA-A95X-06 15 76075473 76075473 G A RN7SL319P 5'Flank 0.50 TCGA-DA-A95X-06 15 79749450 79749450 C T KIAA1024 Missense_Mutation p.P321S 0.47 tolerated(0.2) benign(0.046) TCGA-DA-A95X-06 15 89695072 89695072 A T ABHD2 Missense_Mutation p.H120L 0.44 deleterious(0) benign(0.258) TCGA-DA-A95X-06 15 90335723 90335723 C T ANPEP Missense_Mutation p.G774S 0.38 tolerated(0.98) benign(0.004) TCGA-DA-A95X-06 15 94928753 94928753 C T MCTP2 Missense_Mutation p.S596F 0.40 deleterious(0.01) possibly_damaging(0.882) TCGA-DA-A95X-06 15 97328268 97328268 G A SPATA8 Missense_Mutation p.R80Q 0.50 deleterious_low_confidence(0) benign(0.417) TCGA-DA-A95X-06 16 1270199 1270199 G A CACNA1H Silent p.E2089E 0.33 TCGA-DA-A95X-06 16 1545497 1545497 C T TELO2 Silent p.A162A 0.35 TCGA-DA-A95X-06 16 16276702 16276702 G A ABCC6 Missense_Mutation p.L677F 0.50 deleterious(0) probably_damaging(0.99) TCGA-DA-A95X-06 16 17211650 17211650 C T XYLT1 Missense_Mutation p.E804K 0.55 deleterious(0.01) probably_damaging(0.955) TCGA-DA-A95X-06 16 20492171 20492171 G A ACSM2A Silent p.E479E 0.21 TCGA-DA-A95X-06 16 20975195 20975195 C T DNAH3 Silent p.T3337T 0.28 TCGA-DA-A95X-06 16 21048095 21048095 C T DNAH3 Missense_Mutation p.D1676N 0.21 tolerated(0.17) benign(0.001) TCGA-DA-A95X-06 16 28944436 28944436 G A CD19 Splice_Site p.X187_splice 0.56 TCGA-DA-A95X-06 16 29376316 29376316 G A SNX29P2 RNA 0.38 TCGA-DA-A95X-06 16 30567358 30567358 G A ZNF764 Silent p.A128A 0.34 TCGA-DA-A95X-06 16 31004695 31004695 C T STX1B Silent p.V216V 0.29 TCGA-DA-A95X-06 16 3142602 3142602 C T ZSCAN10 Missense_Mutation p.E58K 0.67 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 16 31471209 31471209 C T ARMC5 Missense_Mutation p.P122S 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A95X-06 16 31503382 31503382 G A C16orf58 Silent p.V419V 0.27 TCGA-DA-A95X-06 16 32077600 32077600 G A IGHV3OR16-9 Missense_Mutation p.R72K 0.22 deleterious_low_confidence(0.02) benign(0.168) TCGA-DA-A95X-06 16 3594321 3594321 T G NLRC3 Missense_Mutation p.E973A 0.32 deleterious(0.02) benign(0.292) TCGA-DA-A95X-06 16 55565859 55565859 C T LPCAT2 Missense_Mutation p.R226C 0.18 deleterious(0.03) possibly_damaging(0.478) TCGA-DA-A95X-06 16 55719056 55719056 C G SLC6A2 Missense_Mutation p.R216G 0.64 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 16 66613409 66613409 C T CMTM2 5'UTR 0.67 TCGA-DA-A95X-06 16 68014018 68014018 C T DPEP3 Missense_Mutation p.R114Q 0.31 tolerated(0.28) benign(0.013) TCGA-DA-A95X-06 16 70502815 70502815 C T FUK Missense_Mutation p.P243S 0.46 deleterious(0) probably_damaging(0.971) TCGA-DA-A95X-06 16 81087654 81087654 G A RP11-303E16.5 5'Flank 0.20 TCGA-DA-A95X-06 16 84034371 84034371 C T NECAB2 Silent p.I335I 0.44 TCGA-DA-A95X-06 16 8866669 8866669 G A ABAT Silent p.K283K 0.51 TCGA-DA-A95X-06 16 8875227 8875227 G A ABAT Silent p.R481R 0.48 TCGA-DA-A95X-06 17 18022649 18022649 G A MYO15A Missense_Mutation p.E179K 0.74 probably_damaging(0.945) TCGA-DA-A95X-06 17 19470495 19470495 C A SLC47A1 Silent p.L421L 0.66 TCGA-DA-A95X-06 17 28417610 28417610 G A EFCAB5 Silent p.Q1285Q 0.66 TCGA-DA-A95X-06 17 29556190 29556190 C T NF1 Nonsense_Mutation p.Q853* 0.70 TCGA-DA-A95X-06 17 3030315 3030315 G A OR1G1 Silent p.F177F 0.41 TCGA-DA-A95X-06 17 3101430 3101430 C T OR1A2 Silent p.F206F 0.40 TCGA-DA-A95X-06 17 31322708 31322708 G A SPACA3 Missense_Mutation p.G106R 0.73 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95X-06 17 3324485 3324485 C T OR3A3 Silent p.L208L 0.45 TCGA-DA-A95X-06 17 3324486 3324486 T A OR3A3 Missense_Mutation p.F209I 0.45 deleterious(0) possibly_damaging(0.838) TCGA-DA-A95X-06 17 33690814 33690814 G A SLFN11 Nonsense_Mutation p.Q5* 0.72 TCGA-DA-A95X-06 17 3833666 3833666 G A ATP2A3 Silent p.F891F 0.35 TCGA-DA-A95X-06 17 39138607 39138607 C T KRT40 Silent p.V213V 0.78 TCGA-DA-A95X-06 17 4047163 4047163 C T CYB5D2 Silent p.F38F 0.34 TCGA-DA-A95X-06 17 40939873 40939873 G T WNK4 Missense_Mutation p.G607W 0.10 deleterious(0.01) unknown(0) TCGA-DA-A95X-06 17 41006631 41006631 G A AOC3 Silent p.L589L 0.72 TCGA-DA-A95X-06 17 41006632 41006632 G A AOC3 Missense_Mutation p.A590T 0.71 deleterious(0.03) probably_damaging(0.986) TCGA-DA-A95X-06 17 41610088 41610088 C A ETV4 Silent p.A255A 0.92 TCGA-DA-A95X-06 17 42428060 42428060 G A GRN Silent p.V200V 0.79 TCGA-DA-A95X-06 17 47126856 47126856 G A IGF2BP1 3'UTR 0.53 TCGA-DA-A95X-06 17 5058805 5058805 C T USP6 Missense_Mutation p.T911I 0.35 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-DA-A95X-06 17 54230870 54230870 C T ANKFN1 5'UTR 0.32 TCGA-DA-A95X-06 17 5463209 5463209 C T NLRP1 Nonsense_Mutation p.W269* 0.35 TCGA-DA-A95X-06 17 56400899 56400899 G A BZRAP1 Missense_Mutation p.P317L 0.30 tolerated(0.18) benign(0.002) TCGA-DA-A95X-06 17 58260727 58260727 G A USP32 Missense_Mutation p.P1308S 0.29 deleterious(0) probably_damaging(0.995) TCGA-DA-A95X-06 17 60040322 60040322 G A MED13 Missense_Mutation p.R1619W 0.38 deleterious(0) probably_damaging(0.982) TCGA-DA-A95X-06 17 62818505 62818505 G A RNU7-115P 3'Flank 0.67 TCGA-DA-A95X-06 17 64216839 64216839 G A APOH Missense_Mutation p.S146F 0.31 deleterious(0) benign(0.435) TCGA-DA-A95X-06 17 6606323 6606323 C T SLC13A5 Missense_Mutation p.G228R 0.42 deleterious(0.01) possibly_damaging(0.692) TCGA-DA-A95X-06 17 72949687 72949687 C T HID1 Missense_Mutation p.E642K 0.26 tolerated(0.41) benign(0.232) TCGA-DA-A95X-06 17 7324664 7324664 G A SPEM1 Missense_Mutation p.E224K 0.85 tolerated(0.89) benign(0) TCGA-DA-A95X-06 17 74005625 74005625 C G EVPL Missense_Mutation p.A1221P 0.28 tolerated(0.08) possibly_damaging(0.556) TCGA-DA-A95X-06 17 74277976 74277976 C T QRICH2 Missense_Mutation p.R1245Q 0.53 tolerated(0.17) possibly_damaging(0.595) TCGA-DA-A95X-06 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.78 deleterious(0.04) possibly_damaging(0.83) TCGA-DA-A95X-06 17 76499001 76499001 C T DNAH17 Silent p.P1679P 0.64 TCGA-DA-A95X-06 17 7751636 7751636 C T KDM6B Missense_Mutation p.P677L 0.72 unknown(0) TCGA-DA-A95X-06 17 78176198 78176198 G A CARD14 Missense_Mutation p.G733D 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 17 78280188 78280188 C T RNF213 Missense_Mutation p.R783C 0.54 benign(0.238) TCGA-DA-A95X-06 17 7912850 7912850 C T GUCY2D Silent p.F565F 0.80 TCGA-DA-A95X-06 17 80046866 80046866 G A FASN Silent p.I761I 0.68 TCGA-DA-A95X-06 17 80887351 80887351 C T TBCD Missense_Mutation p.S989F 0.58 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 17 973304 973304 G A ABR Silent p.F307F 0.42 TCGA-DA-A95X-06 18 10671435 10671435 G A PIEZO2 3'Flank 0.48 TCGA-DA-A95X-06 18 13884977 13884977 G A MC2R Silent p.L181L 0.28 TCGA-DA-A95X-06 18 14752997 14752997 G A ANKRD30B Missense_Mutation p.E166K 0.56 deleterious(0) possibly_damaging(0.8) TCGA-DA-A95X-06 18 19996144 19996144 C T CTAGE1 Missense_Mutation p.G544E 0.65 deleterious(0.01) benign(0.351) TCGA-DA-A95X-06 18 28584156 28584156 C T DSC3 Missense_Mutation p.G689R 0.58 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 18 28972233 28972233 G A DSG4 Missense_Mutation p.G312E 0.82 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 18 3189055 3189055 C T MYOM1 Silent p.T154T 0.28 TCGA-DA-A95X-06 18 33689577 33689577 G A SLC39A6 Silent p.I749I 0.71 TCGA-DA-A95X-06 18 47801558 47801558 G A MBD1 Missense_Mutation p.P284S 0.54 tolerated(0.75) benign(0.031) TCGA-DA-A95X-06 18 50994349 50994349 G A DCC Missense_Mutation p.M1235I 0.65 deleterious(0.01) possibly_damaging(0.876) TCGA-DA-A95X-06 18 54547379 54547379 C T WDR7 Missense_Mutation p.S1170L 0.67 deleterious(0) possibly_damaging(0.895) TCGA-DA-A95X-06 18 6941989 6941989 G A LAMA1 3'UTR 0.52 TCGA-DA-A95X-06 18 8793072 8793072 G A SOGA2 Missense_Mutation p.R655K 0.22 tolerated(0.26) benign(0.133) TCGA-DA-A95X-06 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.35 probably_damaging(1) TCGA-DA-A95X-06 19 12188152 12188152 T C ZNF844 3'UTR 0.36 TCGA-DA-A95X-06 19 13136080 13136080 C T NFIX Silent p.F91F 0.38 TCGA-DA-A95X-06 19 1376560 1376560 C T MUM1 Silent p.N707N 0.38 TCGA-DA-A95X-06 19 15996765 15996765 G A CYP4F2 Silent p.L362L 0.34 TCGA-DA-A95X-06 19 16040400 16040400 C T CYP4F11 Silent p.T70T 0.36 TCGA-DA-A95X-06 19 16860387 16860387 T A NWD1 Missense_Mutation p.F312I 0.44 deleterious(0) probably_damaging(0.975) TCGA-DA-A95X-06 19 18183061 18183061 C T IL12RB1 Silent p.K294K 0.55 TCGA-DA-A95X-06 19 21607583 21607583 A T ZNF493 Missense_Mutation p.T708S 0.25 tolerated(0.18) benign(0.022) TCGA-DA-A95X-06 19 2769010 2769010 G A SGTA Silent p.L19L 0.32 TCGA-DA-A95X-06 19 2993457 2993457 G A TLE6 Missense_Mutation p.E472K 0.40 deleterious(0) probably_damaging(0.981) TCGA-DA-A95X-06 19 40197845 40197845 C T LGALS14 Silent p.F69F 0.83 TCGA-DA-A95X-06 19 40433704 40433704 C T FCGBP Missense_Mutation p.D189N 0.70 benign(0.005) TCGA-DA-A95X-06 19 42819392 42819392 C T TMEM145 Silent p.F186F 0.81 TCGA-DA-A95X-06 19 43237141 43237141 G A PSG3 Silent p.T168T 0.76 TCGA-DA-A95X-06 19 43522943 43522943 G A PSG11 Missense_Mutation p.P230S 0.70 deleterious(0.02) probably_damaging(1) TCGA-DA-A95X-06 19 467756 467756 G A ODF3L2 Missense_Mutation p.P81L 0.40 tolerated(0.66) benign(0.005) TCGA-DA-A95X-06 19 47870282 47870282 C T DHX34 Silent p.I546I 0.58 TCGA-DA-A95X-06 19 49404083 49404083 C T NUCB1 Silent p.L10L 0.75 TCGA-DA-A95X-06 19 49448105 49448105 C T DHDH Missense_Mutation p.P307L 0.72 deleterious(0) possibly_damaging(0.725) TCGA-DA-A95X-06 19 50397614 50397614 C T IL4I1 Missense_Mutation p.E182K 0.71 tolerated(0.41) benign(0.071) TCGA-DA-A95X-06 19 51628413 51628413 G A SIGLEC9 Nonsense_Mutation p.W61* 0.78 TCGA-DA-A95X-06 19 51729066 51729066 C T CD33 Silent p.T142T 0.10 TCGA-DA-A95X-06 19 52001353 52001353 C T SIGLEC12 Missense_Mutation p.G442R 0.80 deleterious(0.02) possibly_damaging(0.838) TCGA-DA-A95X-06 19 53668121 53668121 G A ZNF665 Missense_Mutation p.P541L 0.66 tolerated(0.07) probably_damaging(0.999) TCGA-DA-A95X-06 19 54080517 54080517 A C ZNF331 Silent p.R235R 0.63 TCGA-DA-A95X-06 19 54214303 54214303 G A MIR524 RNA 0.74 TCGA-DA-A95X-06 19 54947602 54947602 G A TTYH1 3'UTR 0.78 TCGA-DA-A95X-06 19 55019380 55019380 C T LAIR2 Silent p.F115F 0.76 TCGA-DA-A95X-06 19 55263166 55263166 C T KIR2DL3 Missense_Mutation p.L261F 0.78 tolerated(0.17) benign(0.287) TCGA-DA-A95X-06 19 55814697 55814697 G A BRSK1 Missense_Mutation p.M349I 0.64 tolerated(0.06) benign(0.019) TCGA-DA-A95X-06 19 56243748 56243748 C T NLRP9 Silent p.Q483Q 0.74 TCGA-DA-A95X-06 19 57336107 57336107 G A PEG3 Intron 0.38 TCGA-DA-A95X-06 19 5844001 5844001 A C FUT3 Missense_Mutation p.F284V 0.43 deleterious(0.01) possibly_damaging(0.652) TCGA-DA-A95X-06 19 6430057 6430057 G A SLC25A41 Missense_Mutation p.A160V 0.38 deleterious(0.03) possibly_damaging(0.893) TCGA-DA-A95X-06 19 7675985 7675985 C T CAMSAP3 Missense_Mutation p.P379S 0.37 tolerated(0.14) possibly_damaging(0.612) TCGA-DA-A95X-06 19 856186 856186 C T ELANE 3'UTR 0.42 TCGA-DA-A95X-06 19 9061493 9061493 C T MUC16 Silent p.G8651G 0.40 TCGA-DA-A95X-06 19 9236881 9236881 G A OR7G3 Missense_Mutation p.S249F 0.38 tolerated(0.12) benign(0.002) TCGA-DA-A95X-06 19 9297155 9297155 G A OR7D2 Missense_Mutation p.G233E 0.34 deleterious_low_confidence(0) benign(0.208) TCGA-DA-A95X-06 1 102296297 102296297 C T OLFM3 Missense_Mutation p.M101I 0.36 tolerated(0.15) benign(0.002) TCGA-DA-A95X-06 1 109714519 109714519 G A KIAA1324 Missense_Mutation p.A167T 0.35 tolerated(0.17) benign(0.278) TCGA-DA-A95X-06 1 1119416 1119416 C A TTLL10 Missense_Mutation p.T402N 0.44 deleterious(0) probably_damaging(0.998) TCGA-DA-A95X-06 1 11288813 11288813 G A MTOR Missense_Mutation p.S981F 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 1 114193657 114193657 C T MAGI3 Missense_Mutation p.P757S 0.34 deleterious(0.01) probably_damaging(0.975) TCGA-DA-A95X-06 1 115231246 115231246 G A AMPD1 Missense_Mutation p.H84Y 0.41 tolerated(1) benign(0.04) TCGA-DA-A95X-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.45 deleterious(0) benign(0.109) TCGA-DA-A95X-06 1 11576057 11576057 G A PTCHD2 Splice_Site p.X530_splice 0.35 TCGA-DA-A95X-06 1 120437341 120437341 C T ADAM30 Missense_Mutation p.G540E 0.33 tolerated(0.1) possibly_damaging(0.714) TCGA-DA-A95X-06 1 12884947 12884947 C T PRAMEF11 Nonsense_Mutation p.W388* 0.44 TCGA-DA-A95X-06 1 12887405 12887405 G A PRAMEF11 Missense_Mutation p.P151L 0.39 deleterious(0.02) benign(0.031) TCGA-DA-A95X-06 1 147120056 147120056 G A ACP6 Missense_Mutation p.H379Y 0.44 tolerated(1) benign(0.433) TCGA-DA-A95X-06 1 153283087 153283087 C T PGLYRP3 Missense_Mutation p.D19N 0.36 tolerated(0.16) benign(0.019) TCGA-DA-A95X-06 1 154098811 154098811 G A NUP210L Silent p.S438S 0.39 TCGA-DA-A95X-06 1 156669769 156669769 G A CRABP2 3'UTR 0.54 TCGA-DA-A95X-06 1 156756596 156756596 C T PRCC Missense_Mutation p.T238I 0.38 deleterious(0.02) possibly_damaging(0.798) TCGA-DA-A95X-06 1 158669714 158669714 G A OR6K2 Silent p.V243V 0.44 TCGA-DA-A95X-06 1 16073463 16073463 G A TMEM82 Missense_Mutation p.D287N 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 1 161047510 161047510 G A PVRL4 Missense_Mutation p.P155S 0.55 deleterious(0.03) benign(0.425) TCGA-DA-A95X-06 1 161600935 161600935 G A FCGR3B Missense_Mutation p.P20S 0.36 tolerated(0.08) probably_damaging(0.92) TCGA-DA-A95X-06 1 16261639 16261639 C T SPEN Silent p.I2968I 0.43 TCGA-DA-A95X-06 1 167367249 167367249 C T POU2F1 Missense_Mutation p.S383L 0.29 tolerated(0.1) unknown(0) TCGA-DA-A95X-06 1 171162482 171162482 G A FMO2 Silent p.V47V 0.38 TCGA-DA-A95X-06 1 173454565 173454565 G A PRDX6 Silent p.R106R 0.39 TCGA-DA-A95X-06 1 173552686 173552686 C T SLC9C2 Missense_Mutation p.G200E 0.40 tolerated(0.51) benign(0.376) TCGA-DA-A95X-06 1 176525445 176525445 G A PAPPA2 5'UTR 0.46 TCGA-DA-A95X-06 1 179414311 179414311 A T AXDND1 Missense_Mutation p.E590D 0.50 deleterious(0.05) possibly_damaging(0.636) TCGA-DA-A95X-06 1 179437706 179437706 A T AXDND1 Nonsense_Mutation p.K643* 0.34 TCGA-DA-A95X-06 1 179530456 179530456 C T NPHS2 Missense_Mutation p.G140E 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 1 179544726 179544726 C T NPHS2 Missense_Mutation p.G92S 0.32 tolerated(0.07) possibly_damaging(0.599) TCGA-DA-A95X-06 1 179600056 179600056 G A TDRD5 Splice_Site p.X376_splice 0.37 TCGA-DA-A95X-06 1 181727944 181727944 C T CACNA1E Silent p.I1515I 0.38 TCGA-DA-A95X-06 1 183867026 183867026 G A RGL1 Missense_Mutation p.D444N 0.56 tolerated(0.07) benign(0.093) TCGA-DA-A95X-06 1 185276783 185276783 A T IVNS1ABP Missense_Mutation p.D123E 0.51 tolerated(0.44) benign(0.005) TCGA-DA-A95X-06 1 18809786 18809786 G A KLHDC7A Missense_Mutation p.D771N 0.41 tolerated(0.27) unknown(0) TCGA-DA-A95X-06 1 197009677 197009677 A T F13B Missense_Mutation p.Y643N 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 1 197390934 197390934 C T CRB1 Missense_Mutation p.S659L 0.34 tolerated(0.22) possibly_damaging(0.631) TCGA-DA-A95X-06 1 203140598 203140598 C T MYBPH Missense_Mutation p.A236T 0.45 deleterious(0.04) probably_damaging(0.955) TCGA-DA-A95X-06 1 204948497 204948497 C T NFASC Silent p.V662V 0.41 TCGA-DA-A95X-06 1 207651415 207651415 C T CR2 Missense_Mutation p.R1030C 0.60 deleterious(0.02) possibly_damaging(0.62) TCGA-DA-A95X-06 1 209800308 209800308 G A LAMB3 Missense_Mutation p.P501S 0.45 tolerated(0.18) benign(0.259) TCGA-DA-A95X-06 1 21074130 21074130 G A HP1BP3 Missense_Mutation p.T387I 0.29 deleterious(0) probably_damaging(0.998) TCGA-DA-A95X-06 1 212118195 212118195 G A INTS7 Silent p.F844F 0.39 TCGA-DA-A95X-06 1 21563244 21563244 C T ECE1 Missense_Mutation p.E495K 0.36 deleterious(0.04) possibly_damaging(0.76) TCGA-DA-A95X-06 1 223402700 223402700 C T SUSD4 Missense_Mutation p.G252E 0.45 deleterious(0) probably_damaging(0.983) TCGA-DA-A95X-06 1 233802650 233802650 C T KCNK1 Missense_Mutation p.S222F 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 1 236195912 236195912 G A NID1 Silent p.I442I 0.28 TCGA-DA-A95X-06 1 240071696 240071696 C T CHRM3 Silent p.F315F 0.38 TCGA-DA-A95X-06 1 2422752 2422752 C T PLCH2 Missense_Mutation p.P519L 0.33 deleterious(0.04) benign(0.059) TCGA-DA-A95X-06 1 2445451 2445451 G A PANK4 Missense_Mutation p.P522L 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-DA-A95X-06 1 247695752 247695752 C T OR2C3 Missense_Mutation p.R21Q 0.33 tolerated(0.29) benign(0.009) TCGA-DA-A95X-06 1 247769689 247769689 C A OR2G3 Missense_Mutation p.Q268K 0.40 tolerated(0.51) benign(0.015) TCGA-DA-A95X-06 1 248039546 248039546 G A TRIM58 Missense_Mutation p.E406K 0.46 tolerated(0.85) benign(0.003) TCGA-DA-A95X-06 1 248309077 248309077 C T OR2M5 Missense_Mutation p.P210S 0.39 deleterious(0) probably_damaging(0.982) TCGA-DA-A95X-06 1 27876287 27876287 A G AHDC1 Silent p.H780H 0.35 TCGA-DA-A95X-06 1 2938668 2938668 G A ACTRT2 Missense_Mutation p.D140N 0.38 tolerated(0.35) benign(0.013) TCGA-DA-A95X-06 1 34677996 34677996 C A C1orf94 Silent p.P570P 0.43 TCGA-DA-A95X-06 1 34677997 34677997 C T C1orf94 Nonsense_Mutation p.Q571* 0.47 TCGA-DA-A95X-06 1 35226975 35226975 G A GJB4 Silent p.A40A 0.47 TCGA-DA-A95X-06 1 35226976 35226976 G A GJB4 Missense_Mutation p.E41K 0.45 tolerated(0.06) benign(0.247) TCGA-DA-A95X-06 1 35480750 35480750 G A ZMYM6 Missense_Mutation p.P148S 0.49 tolerated(0.33) probably_damaging(0.914) TCGA-DA-A95X-06 1 35944596 35944596 G A KIAA0319L Missense_Mutation p.S295F 0.29 deleterious(0) possibly_damaging(0.825) TCGA-DA-A95X-06 1 43393400 43393400 G A SLC2A1 Missense_Mutation p.P385L 0.48 deleterious(0.02) probably_damaging(1) TCGA-DA-A95X-06 1 43637155 43637155 C T EBNA1BP2 Missense_Mutation p.M161I 0.44 tolerated(0.16) benign(0.005) TCGA-DA-A95X-06 1 43893700 43893700 C T SZT2 Missense_Mutation p.P1220L 0.37 tolerated(0.11) benign(0) TCGA-DA-A95X-06 1 43896428 43896428 C T SZT2 Missense_Mutation p.S1524L 0.36 deleterious(0) probably_damaging(0.99) TCGA-DA-A95X-06 1 44596280 44596280 G A KLF17 Missense_Mutation p.R341Q 0.33 deleterious(0) probably_damaging(0.975) TCGA-DA-A95X-06 1 55474006 55474006 C T BSND Missense_Mutation p.S223F 0.39 tolerated(0.54) benign(0.223) TCGA-DA-A95X-06 1 57219580 57219580 C T C1orf168 Missense_Mutation p.E387K 0.43 tolerated(0.18) benign(0.133) TCGA-DA-A95X-06 1 57481065 57481065 C T DAB1 Missense_Mutation p.G312D 0.47 deleterious(0.02) possibly_damaging(0.642) TCGA-DA-A95X-06 1 62321795 62321795 C T INADL Missense_Mutation p.R736C 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 1 66083757 66083757 A G LEPR Missense_Mutation p.K775E 0.39 deleterious(0) probably_damaging(0.928) TCGA-DA-A95X-06 1 67299702 67299702 C T WDR78 Nonsense_Mutation p.W621* 0.29 TCGA-DA-A95X-06 1 75038091 75038091 T A C1orf173 Missense_Mutation p.E1101D 0.42 deleterious(0.03) possibly_damaging(0.616) TCGA-DA-A95X-06 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.33 TCGA-DA-A95X-06 1 87033149 87033149 T A CLCA4 Missense_Mutation p.F333I 0.40 deleterious(0) probably_damaging(0.924) TCGA-DA-A95X-06 20 10026250 10026250 G A ANKEF1 Missense_Mutation p.G242E 0.45 deleterious(0) probably_damaging(0.932) TCGA-DA-A95X-06 20 30584989 30584989 G A XKR7 Missense_Mutation p.G490E 0.42 tolerated(0.13) possibly_damaging(0.747) TCGA-DA-A95X-06 20 30616803 30616803 G A CCM2L Missense_Mutation p.A359T 0.52 tolerated_low_confidence(0.06) benign(0.287) TCGA-DA-A95X-06 20 3102582 3102582 C T UBOX5 Missense_Mutation p.D235N 0.33 tolerated(0.16) benign(0.045) TCGA-DA-A95X-06 20 34022485 34022485 C T GDF5 Missense_Mutation p.R243Q 0.39 deleterious(0.02) possibly_damaging(0.857) TCGA-DA-A95X-06 20 37597756 37597756 G A DHX35 Missense_Mutation p.E25K 0.26 deleterious(0.01) possibly_damaging(0.834) TCGA-DA-A95X-06 20 39713202 39713202 G A TOP1 Nonsense_Mutation p.W203* 0.62 TCGA-DA-A95X-06 20 40709467 40709467 G A PTPRT 3'UTR 0.49 TCGA-DA-A95X-06 20 44506707 44506707 G A ZSWIM3 Missense_Mutation p.E504K 0.46 tolerated(0.08) benign(0.004) TCGA-DA-A95X-06 20 48699272 48699272 G A UBE2V1 3'UTR 0.56 TCGA-DA-A95X-06 20 48699273 48699273 G A UBE2V1 3'UTR 0.58 TCGA-DA-A95X-06 20 56094423 56094423 T C CTCFL Silent p.G255G 0.41 TCGA-DA-A95X-06 20 61525872 61525872 G A DIDO1 Missense_Mutation p.P822L 0.41 probably_damaging(0.999) TCGA-DA-A95X-06 20 62321383 62321383 G T RTEL1 Intron 0.40 TCGA-DA-A95X-06 20 744491 744491 G A SLC52A3 Nonsense_Mutation p.Q242* 0.41 TCGA-DA-A95X-06 20 9365009 9365009 G A PLCB4 Missense_Mutation p.G339R 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 21 30307624 30307624 G A LTN1 Missense_Mutation p.P1607L 0.48 deleterious(0.01) possibly_damaging(0.502) TCGA-DA-A95X-06 21 34123499 34123499 G A PAXBP1 Missense_Mutation p.S513F 0.32 deleterious(0.01) benign(0.156) TCGA-DA-A95X-06 21 41452190 41452190 G A DSCAM Missense_Mutation p.R1437C 0.32 deleterious(0) probably_damaging(0.982) TCGA-DA-A95X-06 21 46330650 46330650 G A ITGB2 Silent p.S16S 0.31 TCGA-DA-A95X-06 21 46330651 46330651 G A ITGB2 Missense_Mutation p.S16F 0.31 tolerated(0.71) unknown(0) TCGA-DA-A95X-06 21 46950788 46950788 C G SLC19A1 Silent p.L349L 0.23 TCGA-DA-A95X-06 21 47570042 47570042 C T FTCD Silent p.R299R 0.50 TCGA-DA-A95X-06 22 17073381 17073381 C T CCT8L2 Silent p.R20R 0.77 TCGA-DA-A95X-06 22 26747069 26747069 C T SEZ6L Missense_Mutation p.S820L 0.78 deleterious(0.01) probably_damaging(0.969) TCGA-DA-A95X-06 22 32914321 32914321 C T SYN3 Missense_Mutation p.G440E 0.55 tolerated(0.07) unknown(0) TCGA-DA-A95X-06 22 40069053 40069053 C T CACNA1I Silent p.I1583I 0.74 TCGA-DA-A95X-06 2 103013100 103013100 C T IL18R1 Silent p.L460L 0.43 TCGA-DA-A95X-06 2 103136390 103136390 C T SLC9A4 Silent p.S598S 0.47 TCGA-DA-A95X-06 2 103281790 103281790 C T SLC9A2 Missense_Mutation p.H329Y 0.38 tolerated(0.5) probably_damaging(0.998) TCGA-DA-A95X-06 2 103318936 103318936 G A SLC9A2 Missense_Mutation p.R607K 0.38 tolerated(0.67) benign(0.005) TCGA-DA-A95X-06 2 108614317 108614317 G A SLC5A7 Missense_Mutation p.D158N 0.44 tolerated(0.1) benign(0.02) TCGA-DA-A95X-06 2 108626719 108626719 G A SLC5A7 Missense_Mutation p.R382Q 0.34 deleterious(0) probably_damaging(0.986) TCGA-DA-A95X-06 2 11775492 11775492 C T GREB1 Silent p.I1769I 0.33 TCGA-DA-A95X-06 2 122000038 122000038 C T TFCP2L1 Missense_Mutation p.G222E 0.37 deleterious(0.01) probably_damaging(1) TCGA-DA-A95X-06 2 1271294 1271294 G A SNTG2 Nonsense_Mutation p.W412* 0.34 TCGA-DA-A95X-06 2 136433015 136433015 C T R3HDM1 Nonsense_Mutation p.Q721* 0.53 TCGA-DA-A95X-06 2 138030231 138030231 C T THSD7B Missense_Mutation p.R799W 0.41 deleterious(0) possibly_damaging(0.835) TCGA-DA-A95X-06 2 138320924 138320924 G A THSD7B Missense_Mutation p.R1094K 0.29 deleterious(0.05) unknown(0) TCGA-DA-A95X-06 2 140990635 140990635 C T LRP1B 3'UTR 0.71 TCGA-DA-A95X-06 2 155102328 155102328 A T GALNT13 Missense_Mutation p.K230N 0.37 tolerated(0.07) benign(0.261) TCGA-DA-A95X-06 2 163057091 163057091 C T FAP Missense_Mutation p.R421K 0.35 tolerated(0.81) probably_damaging(0.999) TCGA-DA-A95X-06 2 169791765 169791765 C T ABCB11 Silent p.A995A 0.41 TCGA-DA-A95X-06 2 179412301 179412301 G A TTN Missense_Mutation p.S31351L 0.51 TCGA-DA-A95X-06 2 179457995 179457995 C T TTN Missense_Mutation p.G19647E 0.42 TCGA-DA-A95X-06 2 179481291 179481291 C T TTN Nonsense_Mutation p.W16076* 0.39 TCGA-DA-A95X-06 2 179522873 179522873 G A TTN Missense_Mutation p.P12575S 0.30 TCGA-DA-A95X-06 2 179584882 179584882 C T TTN Silent p.L7829L 0.46 TCGA-DA-A95X-06 2 179592509 179592509 C T TTN Missense_Mutation p.G6599E 0.41 TCGA-DA-A95X-06 2 179600486 179600486 G A TTN Missense_Mutation p.P4896L 0.43 TCGA-DA-A95X-06 2 179622388 179622388 C A TTN Missense_Mutation p.G3520V 0.40 TCGA-DA-A95X-06 2 179638938 179638938 C T TTN Missense_Mutation p.M2351I 0.41 TCGA-DA-A95X-06 2 180310396 180310396 G A ZNF385B Missense_Mutation p.P326S 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-DA-A95X-06 2 185801535 185801535 A T ZNF804A Missense_Mutation p.N471I 0.39 deleterious(0) possibly_damaging(0.855) TCGA-DA-A95X-06 2 189931472 189931472 C G COL5A2 Missense_Mutation p.G480R 0.34 probably_damaging(0.999) TCGA-DA-A95X-06 2 192700912 192700912 C T SDPR Missense_Mutation p.E339K 0.46 deleterious(0.04) benign(0.407) TCGA-DA-A95X-06 2 196699063 196699063 C T DNAH7 Silent p.L2989L 0.44 TCGA-DA-A95X-06 2 196749421 196749421 C T DNAH7 Missense_Mutation p.R1884Q 0.36 tolerated(0.48) benign(0) TCGA-DA-A95X-06 2 198950719 198950719 T A PLCL1 Silent p.V826V 0.40 TCGA-DA-A95X-06 2 201515810 201515810 C T AOX1 Silent p.S987S 0.39 TCGA-DA-A95X-06 2 207527805 207527805 C T DYTN Silent p.E485E 0.41 TCGA-DA-A95X-06 2 20824518 20824518 G A HS1BP3 Missense_Mutation p.P253L 0.31 tolerated(0.06) benign(0.004) TCGA-DA-A95X-06 2 21228050 21228050 G A APOB Missense_Mutation p.T3897I 0.37 possibly_damaging(0.86) TCGA-DA-A95X-06 2 220073151 220073151 C T ZFAND2B Silent p.A177A 0.38 TCGA-DA-A95X-06 2 220312798 220312798 C T SPEG Silent p.S306S 0.25 TCGA-DA-A95X-06 2 226447216 226447216 G A NYAP2 Silent p.T361T 0.28 TCGA-DA-A95X-06 2 228886490 228886490 C T SPHKAP Missense_Mutation p.E212K 0.48 deleterious(0) probably_damaging(0.927) TCGA-DA-A95X-06 2 231159024 231159024 G A SP140 Silent p.R669R 0.29 TCGA-DA-A95X-06 2 29379288 29379288 A T CLIP4 Nonsense_Mutation p.K412* 0.28 TCGA-DA-A95X-06 2 31483649 31483649 C T EHD3 Missense_Mutation p.S259F 0.41 deleterious(0) possibly_damaging(0.519) TCGA-DA-A95X-06 2 37076513 37076513 G A STRN 3'UTR 0.43 TCGA-DA-A95X-06 2 42588271 42588271 T A COX7A2L Nonsense_Mutation p.K11* 0.41 TCGA-DA-A95X-06 2 60679569 60679569 G T BCL11A 3'Flank 0.42 TCGA-DA-A95X-06 2 64323341 64323341 G A PELI1 Missense_Mutation p.P203L 0.50 deleterious(0.03) probably_damaging(0.934) TCGA-DA-A95X-06 2 71839782 71839782 G A DYSF Silent p.R1411R 0.39 TCGA-DA-A95X-06 2 73195602 73195602 G A SFXN5 Missense_Mutation p.P268S 0.25 deleterious(0.03) probably_damaging(0.964) TCGA-DA-A95X-06 2 73441393 73441393 A G SMYD5 5'UTR 0.32 TCGA-DA-A95X-06 2 73446093 73446093 C T SMYD5 Silent p.Y67Y 0.37 TCGA-DA-A95X-06 2 74867334 74867334 C T M1AP Silent p.R23R 0.53 TCGA-DA-A95X-06 2 86831138 86831138 T C RNF103 Missense_Mutation p.E629G 0.49 tolerated(0.24) benign(0.124) TCGA-DA-A95X-06 2 95943698 95943698 C A PROM2 Silent p.V332V 0.29 TCGA-DA-A95X-06 2 9727624 9727624 G A YWHAQ Silent p.A199A 0.31 TCGA-DA-A95X-06 2 97372912 97372912 C A LMAN2L 3'UTR 0.16 TCGA-DA-A95X-06 3 108072413 108072413 C T HHLA2 Silent p.S68S 0.31 TCGA-DA-A95X-06 3 119134645 119134645 C T ARHGAP31 Missense_Mutation p.P1290L 0.34 deleterious(0.03) benign(0.005) TCGA-DA-A95X-06 3 120389301 120389301 C T HGD Nonsense_Mutation p.W85* 0.47 TCGA-DA-A95X-06 3 122630905 122630905 G A SEMA5B Missense_Mutation p.P1024S 0.36 tolerated(0.64) benign(0.039) TCGA-DA-A95X-06 3 123426793 123426793 G A MYLK Missense_Mutation p.S733F 0.25 tolerated(0.27) benign(0.292) TCGA-DA-A95X-06 3 127334776 127334776 C T MCM2 Silent p.F500F 0.47 TCGA-DA-A95X-06 3 133557100 133557100 C T RAB6B Silent p.Q135Q 0.45 TCGA-DA-A95X-06 3 138119379 138119379 C T MRAS Missense_Mutation p.P151S 0.38 tolerated(0.11) benign(0.039) TCGA-DA-A95X-06 3 155282862 155282862 G A PLCH1 Missense_Mutation p.P292L 0.45 deleterious(0) probably_damaging(0.997) TCGA-DA-A95X-06 3 158261994 158261994 C T RSRC1 Missense_Mutation p.A312V 0.47 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DA-A95X-06 3 167000125 167000125 C T ZBBX Missense_Mutation p.D719N 0.52 deleterious(0) probably_damaging(0.991) TCGA-DA-A95X-06 3 169099049 169099049 C T MECOM Missense_Mutation p.E125K 0.40 tolerated(0.14) benign(0.079) TCGA-DA-A95X-06 3 172096131 172096131 C T FNDC3B Missense_Mutation p.S1027F 0.47 tolerated(0.38) benign(0.102) TCGA-DA-A95X-06 3 172096132 172096132 C T FNDC3B Silent p.S1027S 0.43 TCGA-DA-A95X-06 3 184020595 184020595 T G PSMD2 Missense_Mutation p.L331W 0.37 tolerated(0.12) probably_damaging(0.987) TCGA-DA-A95X-06 3 186006578 186006578 T A DGKG Missense_Mutation p.E155D 0.40 tolerated(0.55) benign(0.001) TCGA-DA-A95X-06 3 193120319 193120319 G A ATP13A4 3'UTR 0.62 TCGA-DA-A95X-06 3 3081944 3081944 C T CNTN4 Missense_Mutation p.S796F 0.42 deleterious(0) possibly_damaging(0.492) TCGA-DA-A95X-06 3 35833953 35833953 G A ARPP21 Silent p.V705V 0.47 TCGA-DA-A95X-06 3 36545927 36545927 C T STAC Missense_Mutation p.P270L 0.33 deleterious(0.05) benign(0) TCGA-DA-A95X-06 3 36778933 36778933 G A DCLK3 Silent p.I406I 0.51 TCGA-DA-A95X-06 3 37366483 37366483 C A GOLGA4 Missense_Mutation p.H1058N 0.42 probably_damaging(0.999) TCGA-DA-A95X-06 3 38739551 38739551 C T SCN10A Silent p.V1720V 0.35 TCGA-DA-A95X-06 3 42445559 42445559 C T LYZL4 Missense_Mutation p.G117E 0.46 tolerated(0.14) benign(0.068) TCGA-DA-A95X-06 3 48965085 48965085 C T ARIH2 Missense_Mutation p.P32S 0.40 tolerated(0.47) benign(0.058) TCGA-DA-A95X-06 3 50225141 50225141 C T SEMA3F Missense_Mutation p.R651C 0.37 deleterious(0) possibly_damaging(0.582) TCGA-DA-A95X-06 3 53781438 53781438 G T CACNA1D Missense_Mutation p.A1113S 0.38 tolerated(0.23) probably_damaging(0.997) TCGA-DA-A95X-06 3 53835248 53835248 C T CACNA1D Missense_Mutation p.S1755L 0.47 deleterious_low_confidence(0.03) benign(0.023) TCGA-DA-A95X-06 3 56468381 56468381 G A ERC2 Nonsense_Mutation p.Q219* 0.52 TCGA-DA-A95X-06 3 96963034 96963034 G A EPHA6 Silent p.V503V 0.41 TCGA-DA-A95X-06 4 100052787 100052787 C T ADH4 Silent p.K237K 0.74 TCGA-DA-A95X-06 4 126411257 126411257 C T FAT4 Missense_Mutation p.P4427L 0.75 probably_damaging(0.999) TCGA-DA-A95X-06 4 126411448 126411448 C T FAT4 Silent p.L4491L 0.80 TCGA-DA-A95X-06 4 128732660 128732660 C T HSPA4L Missense_Mutation p.R483C 0.65 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 4 134073359 134073359 G A PCDH10 Silent p.G688G 0.67 TCGA-DA-A95X-06 4 1388459 1388459 C T CRIPAK Missense_Mutation p.R54C 0.51 tolerated(0.1) probably_damaging(0.942) TCGA-DA-A95X-06 4 151829983 151829983 G C LRBA Missense_Mutation p.S396R 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A95X-06 4 156135485 156135485 C T NPY2R Silent p.L132L 0.74 TCGA-DA-A95X-06 4 158254437 158254437 G T GRIA2 Missense_Mutation p.D363Y 0.72 deleterious(0) probably_damaging(0.968) TCGA-DA-A95X-06 4 159158750 159158750 C T TMEM144 Missense_Mutation p.H213Y 0.89 deleterious(0) probably_damaging(0.968) TCGA-DA-A95X-06 4 169206642 169206642 G A DDX60 Silent p.S449S 0.75 TCGA-DA-A95X-06 4 175897420 175897420 G A ADAM29 Silent p.L248L 0.61 TCGA-DA-A95X-06 4 39875952 39875952 G A PDS5A Missense_Mutation p.A745V 0.80 tolerated(0.37) benign(0.047) TCGA-DA-A95X-06 4 524289 524289 G C PIGG Missense_Mutation p.D776H 0.04 deleterious(0.01) probably_damaging(0.928) TCGA-DA-A95X-06 4 57797809 57797809 C T REST Missense_Mutation p.P929S 0.75 tolerated(0.23) benign(0.185) TCGA-DA-A95X-06 4 87692342 87692342 G A PTPN13 Missense_Mutation p.A1613T 0.60 tolerated(0.38) benign(0.205) TCGA-DA-A95X-06 4 88904054 88904054 G A SPP1 3'UTR 0.89 TCGA-DA-A95X-06 5 100221968 100221968 A T ST8SIA4 Intron 0.57 TCGA-DA-A95X-06 5 101834703 101834703 C T SLCO6A1 5'UTR 0.50 TCGA-DA-A95X-06 5 102444418 102444418 C T GIN1 Intron 0.36 TCGA-DA-A95X-06 5 110407549 110407549 G A TSLP 5'UTR 0.44 TCGA-DA-A95X-06 5 120022094 120022094 G A PRR16 Missense_Mutation p.R179Q 0.40 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-DA-A95X-06 5 129520711 129520711 C T CHSY3 Missense_Mutation p.P626S 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 5 130883756 130883756 A G RAPGEF6 Missense_Mutation p.V160A 0.37 tolerated(0.69) benign(0) TCGA-DA-A95X-06 5 13753637 13753637 G A DNAH5 Missense_Mutation p.A3526V 0.40 possibly_damaging(0.787) TCGA-DA-A95X-06 5 137765940 137765940 T C KDM3B Silent p.V1632V 0.56 TCGA-DA-A95X-06 5 137780109 137780109 C T REEP2 Missense_Mutation p.P63L 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 5 140182281 140182281 G A PCDHA3 Missense_Mutation p.G500E 0.31 deleterious_low_confidence(0.04) probably_damaging(0.938) TCGA-DA-A95X-06 5 140203101 140203101 C T PCDHA5 Missense_Mutation p.P581S 0.41 tolerated_low_confidence(0.91) benign(0.066) TCGA-DA-A95X-06 5 140207721 140207721 C T PCDHA6 Silent p.L15L 0.41 TCGA-DA-A95X-06 5 140221648 140221648 G A PCDHA8 Missense_Mutation p.E248K 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-DA-A95X-06 5 140229742 140229742 C T PCDHA9 Silent p.F554F 0.37 TCGA-DA-A95X-06 5 140262350 140262350 C T PCDHA13 Missense_Mutation p.S166L 0.44 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DA-A95X-06 5 140308121 140308121 G A PCDHAC1 Silent p.R548R 0.39 TCGA-DA-A95X-06 5 140553709 140553709 G A PCDHB7 Silent p.L431L 0.38 TCGA-DA-A95X-06 5 140723744 140723744 C T PCDHGA3 Silent p.I48I 0.38 TCGA-DA-A95X-06 5 140740377 140740377 G A PCDHGB2 Silent p.T225T 0.42 TCGA-DA-A95X-06 5 140768402 140768402 G C PCDHGB4 Missense_Mutation p.L317F 0.39 deleterious(0) possibly_damaging(0.756) TCGA-DA-A95X-06 5 142593609 142593609 A C ARHGAP26 Missense_Mutation p.H771P 0.42 deleterious(0) possibly_damaging(0.855) TCGA-DA-A95X-06 5 142593610 142593610 T A ARHGAP26 Missense_Mutation p.H771Q 0.40 deleterious(0) possibly_damaging(0.855) TCGA-DA-A95X-06 5 142601984 142601984 C T ARHGAP26 Silent p.I806I 0.33 TCGA-DA-A95X-06 5 147016537 147016537 C T JAKMIP2 Silent p.Q535Q 0.49 TCGA-DA-A95X-06 5 147443642 147443642 T C SPINK5 Missense_Mutation p.L12S 0.41 deleterious(0) probably_damaging(0.999) TCGA-DA-A95X-06 5 150321814 150321814 G A ZNF300P1 RNA 0.90 TCGA-DA-A95X-06 5 151771753 151771753 C T NMUR2 Silent p.%3D 0.77 TCGA-DA-A95X-06 5 151784059 151784059 C T NMUR2 Missense_Mutation p.V206I 0.78 tolerated(0.08) benign(0.09) TCGA-DA-A95X-06 5 159491992 159491992 G A TTC1 Missense_Mutation p.E267K 0.75 tolerated(0.13) benign(0.313) TCGA-DA-A95X-06 5 160721351 160721351 C T GABRB2 Missense_Mutation p.D426N 0.73 tolerated(0.11) benign(0.285) TCGA-DA-A95X-06 5 161324551 161324551 C T GABRA1 3'UTR 0.67 TCGA-DA-A95X-06 5 176308039 176308039 G A HK3 3'UTR 0.82 TCGA-DA-A95X-06 5 178358574 178358574 C T ZFP2 Missense_Mutation p.S87F 0.77 deleterious(0.05) benign(0.001) TCGA-DA-A95X-06 5 31316422 31316422 G A CDH6 Missense_Mutation p.A500T 0.44 tolerated(0.12) benign(0.033) TCGA-DA-A95X-06 5 33445502 33445502 C T TARS Nonsense_Mutation p.R44* 0.41 TCGA-DA-A95X-06 5 35066105 35066105 C T PRLR Missense_Mutation p.D319N 0.41 deleterious(0.04) probably_damaging(0.995) TCGA-DA-A95X-06 5 35086430 35086430 G A PRLR Missense_Mutation p.P28L 0.31 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 5 35954364 35954364 C T UGT3A1 Silent p.G504G 0.46 TCGA-DA-A95X-06 5 38406258 38406258 G A EGFLAM Missense_Mutation p.G248E 0.52 deleterious_low_confidence(0.03) benign(0.216) TCGA-DA-A95X-06 5 38464052 38464052 G A EGFLAM Silent p.V1006V 0.36 TCGA-DA-A95X-06 5 41058254 41058254 G A MROH2B Missense_Mutation p.R223W 0.41 tolerated(0.05) benign(0.031) TCGA-DA-A95X-06 5 5460597 5460597 C T KIAA0947 Nonsense_Mutation p.Q384* 0.67 TCGA-DA-A95X-06 5 57913477 57913477 C T RAB3C Missense_Mutation p.S11F 0.38 deleterious(0) benign(0.27) TCGA-DA-A95X-06 5 57913635 57913635 G A RAB3C Missense_Mutation p.G64R 0.34 deleterious(0.04) probably_damaging(0.997) TCGA-DA-A95X-06 5 64483905 64483905 C T ADAMTS6 Missense_Mutation p.E950K 0.68 tolerated(0.82) benign(0.122) TCGA-DA-A95X-06 5 78376674 78376674 G A BHMT2 Nonsense_Mutation p.W141* 0.42 TCGA-DA-A95X-06 5 90020693 90020693 G A GPR98 Missense_Mutation p.E3265K 0.35 benign(0) TCGA-DA-A95X-06 5 94248644 94248644 C T MCTP1 Missense_Mutation p.R463K 0.46 tolerated(0.29) benign(0.049) TCGA-DA-A95X-06 5 94289029 94289029 C T MCTP1 Missense_Mutation p.G292E 0.38 deleterious(0) probably_damaging(0.928) TCGA-DA-A95X-06 5 95242249 95242249 G A ELL2 Missense_Mutation p.S240F 0.46 deleterious(0.01) possibly_damaging(0.462) TCGA-DA-A95X-06 6 116264316 116264316 G A FRK Silent p.H391H 0.73 TCGA-DA-A95X-06 6 117249957 117249957 C T RFX6 Missense_Mutation p.H812Y 0.74 deleterious_low_confidence(0.02) benign(0.285) TCGA-DA-A95X-06 6 121544465 121544465 G A TBC1D32 Missense_Mutation p.P800S 0.68 tolerated(0.31) benign(0.026) TCGA-DA-A95X-06 6 121768740 121768740 G A GJA1 Silent p.A249A 0.71 TCGA-DA-A95X-06 6 128505788 128505788 G A PTPRK Silent p.I317I 0.79 TCGA-DA-A95X-06 6 130762860 130762860 G A TMEM200A Missense_Mutation p.M431I 0.74 tolerated(0.83) benign(0) TCGA-DA-A95X-06 6 133014217 133014217 T C VNN1 Missense_Mutation p.M258V 0.65 deleterious(0.02) benign(0.065) TCGA-DA-A95X-06 6 143929412 143929412 C T PHACTR2 5'UTR 0.83 TCGA-DA-A95X-06 6 150004834 150004834 G A LATS1 Missense_Mutation p.S464F 0.75 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A95X-06 6 160998235 160998235 T G LPA Missense_Mutation p.T1522P 0.76 tolerated(0.14) probably_damaging(0.913) TCGA-DA-A95X-06 6 25799036 25799036 C T SLC17A1 Missense_Mutation p.E461K 0.17 deleterious(0.01) possibly_damaging(0.717) TCGA-DA-A95X-06 6 28297462 28297462 C T ZSCAN31 5'UTR 0.29 TCGA-DA-A95X-06 6 28541494 28541494 C T SCAND3 Silent p.G724G 0.16 TCGA-DA-A95X-06 6 28542887 28542887 G A SCAND3 Missense_Mutation p.S532F 0.67 tolerated_low_confidence(0.55) benign(0.205) TCGA-DA-A95X-06 6 29141776 29141776 G A OR2J2 Missense_Mutation p.D122N 0.58 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 6 31733760 31733760 G A VWA7 Missense_Mutation p.S800F 0.28 deleterious(0) probably_damaging(0.938) TCGA-DA-A95X-06 6 31747243 31747243 G A VARS Missense_Mutation p.S1120F 0.30 deleterious(0.01) benign(0.174) TCGA-DA-A95X-06 6 32410362 32410362 G A HLA-DRA Missense_Mutation p.G74R 0.26 deleterious(0.03) probably_damaging(0.922) TCGA-DA-A95X-06 6 34825533 34825533 G A UHRF1BP1 Missense_Mutation p.G536S 0.24 tolerated(0.22) benign(0.141) TCGA-DA-A95X-06 6 35209403 35209403 C G SCUBE3 Missense_Mutation p.L427V 0.29 deleterious(0.04) benign(0.272) TCGA-DA-A95X-06 6 38917234 38917234 C T DNAH8 Missense_Mutation p.R3829C 0.57 probably_damaging(0.932) TCGA-DA-A95X-06 6 38950129 38950129 G A DNAH8 Missense_Mutation p.R4064Q 0.28 probably_damaging(0.964) TCGA-DA-A95X-06 6 40359663 40359663 G A LRFN2 3'UTR 0.24 TCGA-DA-A95X-06 6 46977321 46977321 C T GPR110 Missense_Mutation p.S617N 0.14 tolerated(1) benign(0.032) TCGA-DA-A95X-06 6 54804792 54804792 G A FAM83B Silent p.G341G 0.28 TCGA-DA-A95X-06 6 54805169 54805169 T A FAM83B Missense_Mutation p.F467Y 0.61 tolerated(0.49) possibly_damaging(0.492) TCGA-DA-A95X-06 6 70589430 70589430 C T COL19A1 Intron 0.51 TCGA-DA-A95X-06 6 73933467 73933467 G A KHDC1L 3'UTR 0.25 TCGA-DA-A95X-06 6 83937129 83937129 C T ME1 Silent p.R400R 0.22 TCGA-DA-A95X-06 6 94120172 94120172 G A EPHA7 Intron 0.56 TCGA-DA-A95X-06 7 103805717 103805717 A C ORC5 Missense_Mutation p.I335S 0.88 tolerated(0.5) benign(0.256) TCGA-DA-A95X-06 7 114330125 114330125 C T FOXP2 3'UTR 0.40 TCGA-DA-A95X-06 7 128496813 128496813 C T FLNC Missense_Mutation p.R2467C 0.86 tolerated(0.15) benign(0.166) TCGA-DA-A95X-06 7 141443755 141443755 C T SSBP1 Missense_Mutation p.L94F 0.84 deleterious(0.03) probably_damaging(1) TCGA-DA-A95X-06 7 141736640 141736640 C T MGAM Silent p.S698S 0.86 TCGA-DA-A95X-06 7 141765631 141765631 G A MGAM Intron 0.93 TCGA-DA-A95X-06 7 141805790 141805790 C T MGAM 3'UTR 1.00 TCGA-DA-A95X-06 7 141955063 141955063 C T PRSS58 Missense_Mutation p.G83D 0.82 tolerated(0.53) benign(0.09) TCGA-DA-A95X-06 7 142649727 142649727 T C KEL Splice_Site p.X358_splice 0.84 TCGA-DA-A95X-06 7 142658068 142658068 T A KEL Missense_Mutation p.N116I 0.82 deleterious(0) possibly_damaging(0.595) TCGA-DA-A95X-06 7 14880834 14880834 G A DGKB Nonsense_Mutation p.Q19* 0.82 TCGA-DA-A95X-06 7 149480635 149480635 C T SSPO RNA 0.85 TCGA-DA-A95X-06 7 149559108 149559108 G T ZNF862 Missense_Mutation p.M953I 0.84 tolerated(0.25) benign(0.033) TCGA-DA-A95X-06 7 151065832 151065832 C T NUB1 Silent p.L393L 0.84 TCGA-DA-A95X-06 7 20782527 20782527 C T ABCB5 Nonsense_Mutation p.R1018* 0.85 TCGA-DA-A95X-06 7 23213840 23213840 C T KLHL7 Missense_Mutation p.R562C 0.87 deleterious(0) possibly_damaging(0.457) TCGA-DA-A95X-06 7 28849013 28849013 G A CREB5 Silent p.Q412Q 0.92 TCGA-DA-A95X-06 7 30695620 30695620 G A CRHR2 Silent p.F307F 0.85 TCGA-DA-A95X-06 7 64649502 64649502 G A INTS4L1 RNA 0.73 TCGA-DA-A95X-06 7 65432723 65432723 G A GUSB Missense_Mutation p.H550Y 0.89 deleterious(0) probably_damaging(0.947) TCGA-DA-A95X-06 7 81695775 81695775 G A CACNA2D1 Missense_Mutation p.P242S 0.71 tolerated(0.1) probably_damaging(0.999) TCGA-DA-A95X-06 7 99377670 99377670 C T CYP3A4 Missense_Mutation p.G37E 0.74 deleterious(0) benign(0.098) TCGA-DA-A95X-06 8 104225186 104225186 G A BAALC Missense_Mutation p.R67Q 0.42 tolerated(0.25) probably_damaging(0.976) TCGA-DA-A95X-06 8 106814327 106814327 C T ZFPM2 Missense_Mutation p.P673S 0.54 tolerated(0.18) benign(0.004) TCGA-DA-A95X-06 8 10755671 10755671 G A XKR6 Missense_Mutation p.P573S 0.35 tolerated(0.08) benign(0.012) TCGA-DA-A95X-06 8 110100375 110100375 G A TRHR Missense_Mutation p.G212R 0.39 deleterious(0) possibly_damaging(0.88) TCGA-DA-A95X-06 8 114031325 114031325 C T CSMD3 Missense_Mutation p.R334Q 0.39 deleterious(0.04) possibly_damaging(0.906) TCGA-DA-A95X-06 8 120435330 120435330 C T NOV Silent p.F344F 0.40 TCGA-DA-A95X-06 8 133645186 133645186 C T LRRC6 Silent p.E151E 0.32 TCGA-DA-A95X-06 8 134145718 134145718 C T TG Missense_Mutation p.P2668S 0.38 deleterious(0.03) probably_damaging(1) TCGA-DA-A95X-06 8 139190865 139190865 C T FAM135B Missense_Mutation p.M314I 0.40 deleterious(0) benign(0.003) TCGA-DA-A95X-06 8 142228900 142228900 A T SLC45A4 Missense_Mutation p.V229D 0.36 tolerated(0.21) benign(0.009) TCGA-DA-A95X-06 8 143694691 143694691 C T ARC Silent p.V314V 0.49 TCGA-DA-A95X-06 8 143958266 143958266 G A CYP11B1 Silent p.L211L 0.28 TCGA-DA-A95X-06 8 144993476 144993476 G A PLEC Missense_Mutation p.P3642S 0.36 possibly_damaging(0.447) TCGA-DA-A95X-06 8 22473547 22473547 T G CCAR2 Missense_Mutation p.F544C 0.47 deleterious(0) probably_damaging(0.998) TCGA-DA-A95X-06 8 24342868 24342868 C T ADAM7 Silent p.I318I 0.37 TCGA-DA-A95X-06 8 27321390 27321390 G A CHRNA2 Silent p.F190F 0.42 TCGA-DA-A95X-06 8 2832090 2832090 A T CSMD1 Missense_Mutation p.F2875I 0.39 possibly_damaging(0.71) TCGA-DA-A95X-06 8 28575321 28575321 C T EXTL3 Missense_Mutation p.P582L 0.42 tolerated(0.07) benign(0.16) TCGA-DA-A95X-06 8 41585519 41585519 C T ANK1 Silent p.G111G 0.40 TCGA-DA-A95X-06 8 52320958 52320958 C T PXDNL Missense_Mutation p.E1076K 0.33 deleterious(0.01) benign(0.206) TCGA-DA-A95X-06 8 57219259 57219259 C T SDR16C5 Missense_Mutation p.G229E 0.38 tolerated(0.11) probably_damaging(0.911) TCGA-DA-A95X-06 8 59493127 59493127 A G SDCBP Missense_Mutation p.T268A 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A95X-06 8 6874317 6874317 G A DEFA3 Missense_Mutation p.A19V 0.11 deleterious(0.01) probably_damaging(0.918) TCGA-DA-A95X-06 8 70744489 70744489 G A SLCO5A1 Silent p.I140I 0.48 TCGA-DA-A95X-06 8 77618387 77618387 G A ZFHX4 Silent p.R688R 0.44 TCGA-DA-A95X-06 9 104071691 104071691 C T LPPR1 Missense_Mutation p.S195F 0.68 tolerated(0.09) probably_damaging(0.985) TCGA-DA-A95X-06 9 119093607 119093607 C T PAPPA Nonsense_Mutation p.Q1078* 0.78 TCGA-DA-A95X-06 9 125282243 125282243 C T OR1J4 Missense_Mutation p.S275F 0.75 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-DA-A95X-06 9 126144841 126144841 G A DENND1A Missense_Mutation p.P634S 0.58 tolerated(0.12) benign(0.443) TCGA-DA-A95X-06 9 127975798 127975798 C T RABEPK Missense_Mutation p.P121S 0.79 tolerated(0.48) benign(0.305) TCGA-DA-A95X-06 9 131020105 131020105 G A GOLGA2 Missense_Mutation p.R832C 0.73 tolerated(0.07) benign(0.231) TCGA-DA-A95X-06 9 135554838 135554838 C T GTF3C4 Missense_Mutation p.S611L 0.74 tolerated_low_confidence(0.1) benign(0.207) TCGA-DA-A95X-06 9 135973963 135973963 G A RALGDS 3'UTR 0.72 TCGA-DA-A95X-06 9 136083935 136083935 C T OBP2B Missense_Mutation p.D43N 0.82 tolerated(0.31) benign(0.21) TCGA-DA-A95X-06 9 137623381 137623381 G A COL5A1 Missense_Mutation p.G402R 0.65 possibly_damaging(0.854) TCGA-DA-A95X-06 9 137734045 137734045 C T COL5A1 Missense_Mutation p.P1805S 0.82 unknown(0) TCGA-DA-A95X-06 9 139316424 139316424 C T PMPCA Silent p.L468L 0.62 TCGA-DA-A95X-06 9 139617796 139617796 C A FAM69B Missense_Mutation p.S289Y 0.56 deleterious(0.01) possibly_damaging(0.797) TCGA-DA-A95X-06 9 19058043 19058043 A G HAUS6 Missense_Mutation p.S908P 0.75 tolerated(0.09) probably_damaging(0.99) TCGA-DA-A95X-06 9 19352080 19352080 C T DENND4C Missense_Mutation p.P1453L 0.65 tolerated(0.17) benign(0.001) TCGA-DA-A95X-06 9 21837911 21837911 A G MTAP Missense_Mutation p.T118A 0.70 tolerated(0.29) benign(0.057) TCGA-DA-A95X-06 9 34497151 34497151 C T DNAI1 Silent p.I285I 0.72 TCGA-DA-A95X-06 9 39103864 39103864 G A CNTNAP3 Missense_Mutation p.H805Y 0.71 tolerated(0.07) probably_damaging(0.998) TCGA-DA-A95X-06 9 86363276 86363276 C T GKAP1 Silent p.K284K 0.65 TCGA-DA-A95X-06 X 10094264 10094264 C T WWC3 Missense_Mutation p.P675L 0.83 tolerated(0.06) probably_damaging(0.999) TCGA-DA-A95X-06 X 101768887 101768887 G A TMSB15A 3'UTR 0.90 TCGA-DA-A95X-06 X 11272674 11272674 G A ARHGAP6 Missense_Mutation p.P248S 0.81 deleterious(0.01) possibly_damaging(0.878) TCGA-DA-A95X-06 X 117043793 117043793 C T KLHL13 Missense_Mutation p.M282I 0.78 deleterious(0.04) possibly_damaging(0.55) TCGA-DA-A95X-06 X 118220826 118220826 C T KIAA1210 Missense_Mutation p.G1456D 0.77 tolerated(0.32) probably_damaging(0.943) TCGA-DA-A95X-06 X 123554399 123554399 C T TENM1 Missense_Mutation p.D1582N 0.76 tolerated(0.07) benign(0.379) TCGA-DA-A95X-06 X 1409361 1409361 G A CSF2RA Missense_Mutation p.G202D 0.03 tolerated(0.16) probably_damaging(0.976) TCGA-DA-A95X-06 X 140996697 140996697 G A MAGEC1 3'UTR 0.75 TCGA-DA-A95X-06 X 150154197 150154197 C T HMGB3 Missense_Mutation p.S42F 0.86 deleterious(0) probably_damaging(0.997) TCGA-DA-A95X-06 X 152101463 152101463 G A ZNF185 Missense_Mutation p.G356S 1.00 tolerated(0.23) benign(0.169) TCGA-DA-A95X-06 X 153186945 153186945 C A ARHGAP4 Missense_Mutation p.W103L 0.89 deleterious(0) probably_damaging(1) TCGA-DA-A95X-06 X 153760926 153760926 G A G6PD Silent p.F411F 0.77 TCGA-DA-A95X-06 X 154736654 154736654 T C TMLHE Silent p.E300E 0.04 TCGA-DA-A95X-06 X 154736656 154736656 C A TMLHE Nonsense_Mutation p.E300* 0.05 TCGA-DA-A95X-06 X 30269057 30269057 C T MAGEB1 Silent p.I149I 0.71 TCGA-DA-A95X-06 X 47775725 47775725 G A ZNF81 Silent p.G560G 0.78 TCGA-DA-A95X-06 X 48049571 48049571 G A SSX5 Missense_Mutation p.S196F 0.90 deleterious(0) possibly_damaging(0.771) TCGA-DA-A95X-06 X 48549500 48549500 G A WAS Missense_Mutation p.E486K 0.88 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95X-06 X 64139099 64139099 G A ZC4H2 Intron 0.31 TCGA-DA-A95X-06 X 65392233 65392233 G A HEPH Silent p.R122R 0.84 TCGA-DA-A95X-06 X 73812104 73812104 G T RLIM Missense_Mutation p.T349K 0.21 deleterious(0.01) unknown(0) TCGA-DA-A95X-06 X 77913863 77913863 G A ZCCHC5 Missense_Mutation p.R19W 0.87 deleterious_low_confidence(0) benign(0.153) TCGA-DA-A95X-06 X 78426748 78426748 C T GPR174 Missense_Mutation p.H82Y 0.92 tolerated(0.14) benign(0.002) TCGA-DA-A95X-06 X 83128311 83128311 G A CYLC1 Missense_Mutation p.D199N 0.86 tolerated(0.33) possibly_damaging(0.728) TCGA-DA-A95X-06 X 84586073 84586073 C T POF1B Missense_Mutation p.D246N 0.91 tolerated_low_confidence(0.06) probably_damaging(0.928) TCGA-DA-A95X-06 X 86877373 86877373 G A KLHL4 Missense_Mutation p.E363K 0.78 tolerated(0.12) benign(0.096) TCGA-DA-A95Y-06 10 11504859 11504859 G A USP6NL Missense_Mutation p.P707S 0.46 tolerated_low_confidence(0.14) benign(0.23) TCGA-DA-A95Y-06 10 127442370 127442370 C T EDRF1 Silent p.L1167L 0.33 TCGA-DA-A95Y-06 10 127677334 127677334 C T FANK1 Intron 0.26 TCGA-DA-A95Y-06 10 43604510 43604510 G A RET Silent p.S365S 0.40 TCGA-DA-A95Y-06 10 43604511 43604511 G C RET Missense_Mutation p.E366Q 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A95Y-06 10 50315776 50315776 C T VSTM4 Missense_Mutation p.G107E 0.40 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 10 50856606 50856606 C T CHAT Silent p.F445F 0.45 TCGA-DA-A95Y-06 10 55582854 55582854 C T PCDH15 Silent p.Q1546Q 0.38 TCGA-DA-A95Y-06 10 56106214 56106214 C T PCDH15 Missense_Mutation p.G169R 0.37 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 10 61830238 61830238 G A ANK3 Silent p.I3467I 0.46 TCGA-DA-A95Y-06 10 7608313 7608313 T A ITIH5 Missense_Mutation p.K736I 0.20 deleterious(0) probably_damaging(0.964) TCGA-DA-A95Y-06 10 7618923 7618923 G A ITIH5 Missense_Mutation p.P491S 0.48 tolerated(0.79) benign(0.166) TCGA-DA-A95Y-06 10 76360208 76360208 C T ADK Silent p.I278I 0.19 TCGA-DA-A95Y-06 10 7786844 7786844 G A ITIH2 Silent p.K833K 0.54 TCGA-DA-A95Y-06 10 7797888 7797888 C T KIN 3'UTR 0.24 TCGA-DA-A95Y-06 10 81272525 81272525 C T EIF5AL1 Silent p.I40I 0.26 TCGA-DA-A95Y-06 10 85973907 85973907 G A CDHR1 Missense_Mutation p.V704M 0.35 tolerated_low_confidence(0.29) benign(0.115) TCGA-DA-A95Y-06 10 94715448 94715448 C T EXOC6 Missense_Mutation p.L584F 0.28 deleterious(0.01) possibly_damaging(0.904) TCGA-DA-A95Y-06 10 96350416 96350416 C T HELLS Silent p.I550I 0.45 TCGA-DA-A95Y-06 11 101849171 101849171 A T KIAA1377 Missense_Mutation p.K980M 0.08 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Y-06 11 102647372 102647372 T C MMP10 Missense_Mutation p.D253G 0.38 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 11 102649402 102649402 C T MMP10 Missense_Mutation p.G192E 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Y-06 11 1029548 1029548 G A MUC6 Silent p.L361L 0.48 TCGA-DA-A95Y-06 11 10821734 10821734 G A EIF4G2 Silent p.F674F 0.42 TCGA-DA-A95Y-06 11 112088502 112088502 C T BCO2 Silent p.L549L 0.64 TCGA-DA-A95Y-06 11 120189140 120189140 C T POU2F3 3'UTR 0.71 TCGA-DA-A95Y-06 11 124413006 124413006 G A OR8B12 Missense_Mutation p.P182L 0.72 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-DA-A95Y-06 11 125267838 125267838 G A PKNOX2 Silent p.K156K 0.77 TCGA-DA-A95Y-06 11 126333084 126333084 C T KIRREL3 Missense_Mutation p.G237E 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 11 20657957 20657957 G A SLC6A5 Missense_Mutation p.D577N 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A95Y-06 11 30516918 30516918 G A MPPED2 Missense_Mutation p.S154F 0.39 deleterious(0.01) benign(0.285) TCGA-DA-A95Y-06 11 4510219 4510219 C T OR52K1 Missense_Mutation p.S30F 0.40 deleterious(0.01) probably_damaging(0.933) TCGA-DA-A95Y-06 11 49168236 49168236 C T FOLH1 3'UTR 0.53 TCGA-DA-A95Y-06 11 50003194 50003194 G A OR4C12 Missense_Mutation p.P282S 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A95Y-06 11 57460100 57460100 G A ZDHHC5 Silent p.R226R 0.40 TCGA-DA-A95Y-06 11 58711031 58711031 G A GLYATL1 Missense_Mutation p.G14R 0.39 tolerated_low_confidence(0.07) benign(0) TCGA-DA-A95Y-06 11 60482567 60482567 C T MS4A8 Missense_Mutation p.S203F 0.39 deleterious(0) probably_damaging(0.954) TCGA-DA-A95Y-06 11 60640873 60640873 G A ZP1 Silent p.G422G 0.41 TCGA-DA-A95Y-06 11 63174035 63174035 C T SLC22A9 Silent p.F380F 0.40 TCGA-DA-A95Y-06 11 64111592 64111592 C T CCDC88B Missense_Mutation p.P527S 0.39 tolerated_low_confidence(0.35) benign(0.007) TCGA-DA-A95Y-06 11 64698935 64698935 G A PPP2R5B Missense_Mutation p.E307K 0.19 deleterious(0) probably_damaging(0.966) TCGA-DA-A95Y-06 11 65124271 65124271 C T TIGD3 Missense_Mutation p.A331V 0.35 tolerated(0.55) benign(0.102) TCGA-DA-A95Y-06 11 65622724 65622724 G A CFL1 3'UTR 0.62 TCGA-DA-A95Y-06 11 66102467 66102467 G A RIN1 Missense_Mutation p.P268L 0.49 tolerated(0.08) probably_damaging(0.999) TCGA-DA-A95Y-06 11 66453808 66453808 A G SPTBN2 Intron 0.41 TCGA-DA-A95Y-06 11 6816910 6816910 C A OR6A2 Silent p.V10V 0.41 TCGA-DA-A95Y-06 11 7022671 7022671 C T ZNF214 Silent p.Q81Q 0.39 TCGA-DA-A95Y-06 11 70348935 70348935 C T SHANK2 Silent p.R722R 0.89 TCGA-DA-A95Y-06 11 8496434 8496434 C T STK33 Missense_Mutation p.D7N 0.45 tolerated_low_confidence(0.37) benign(0.004) TCGA-DA-A95Y-06 11 9308057 9308057 G A TMEM41B Silent p.I217I 0.38 TCGA-DA-A95Y-06 12 100453633 100453650 GCATTAAGCCATCAACTC - UHRF1BP1L In_Frame_Del p.R574_M579del 0.22 TCGA-DA-A95Y-06 12 101520820 101520820 G A ANO4 Missense_Mutation p.G912E 0.55 tolerated(0.1) probably_damaging(0.933) TCGA-DA-A95Y-06 12 108919995 108919995 C G SART3 Missense_Mutation p.V751L 0.33 tolerated(0.06) possibly_damaging(0.669) TCGA-DA-A95Y-06 12 119563206 119563206 A G SRRM4 Missense_Mutation p.K179R 0.25 tolerated_low_confidence(0.1) unknown(0) TCGA-DA-A95Y-06 12 1219374 1219374 C T ERC1 Missense_Mutation p.S393F 0.49 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Y-06 12 14829808 14829808 A T GUCY2C Missense_Mutation p.F310I 0.49 tolerated(0.21) benign(0.039) TCGA-DA-A95Y-06 12 15654915 15654915 C T PTPRO Silent p.F341F 0.41 TCGA-DA-A95Y-06 12 21032512 21032512 C T SLCO1B3 Silent p.F426F 0.32 TCGA-DA-A95Y-06 12 21799892 21799892 A G LDHB Missense_Mutation p.M63T 0.35 tolerated(0.32) possibly_damaging(0.638) TCGA-DA-A95Y-06 12 2717708 2717708 G A CACNA1C Missense_Mutation p.E1150K 0.42 deleterious(0) possibly_damaging(0.642) TCGA-DA-A95Y-06 12 32994000 32994000 G A PKP2 Silent p.L550L 0.40 TCGA-DA-A95Y-06 12 43847849 43847849 G A ADAMTS20 Missense_Mutation p.R541C 0.24 deleterious(0.02) possibly_damaging(0.828) TCGA-DA-A95Y-06 12 4643428 4643428 G A C12orf4 Silent p.S73S 0.47 TCGA-DA-A95Y-06 12 5020605 5020605 G A KCNA1 Missense_Mutation p.D21N 0.37 tolerated(0.15) possibly_damaging(0.479) TCGA-DA-A95Y-06 12 51675264 51675264 G A BIN2 3'UTR 0.36 TCGA-DA-A95Y-06 12 51887530 51887530 G A SLC4A8 Missense_Mutation p.G915R 0.31 deleterious(0) probably_damaging(0.963) TCGA-DA-A95Y-06 12 52685278 52685278 G A KRT81 5'UTR 0.36 TCGA-DA-A95Y-06 12 53453489 53453489 C T TENC1 Silent p.Y698Y 0.32 TCGA-DA-A95Y-06 12 54109699 54109699 G C CALCOCO1 Missense_Mutation p.L380V 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Y-06 12 55688535 55688535 C T OR6C6 Missense_Mutation p.G161E 0.35 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-DA-A95Y-06 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-DA-A95Y-06 12 57114719 57114719 G A NACA Missense_Mutation p.P199S 0.10 deleterious_low_confidence(0.02) benign(0) TCGA-DA-A95Y-06 12 69113388 69113388 C T NUP107 Missense_Mutation p.P402L 0.71 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Y-06 12 6964922 6964922 G A USP5 Missense_Mutation p.E81K 0.40 tolerated(0.65) benign(0.031) TCGA-DA-A95Y-06 12 70980858 70980858 C T PTPRB Missense_Mutation p.R747Q 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-DA-A95Y-06 12 73057097 73057097 G A TRHDE 3'UTR 0.47 TCGA-DA-A95Y-06 12 7843273 7843273 G A GDF3 Missense_Mutation p.S99F 0.36 tolerated(0.07) benign(0.002) TCGA-DA-A95Y-06 12 79842783 79842783 G A SYT1 Missense_Mutation p.S383N 0.52 deleterious(0.01) benign(0.015) TCGA-DA-A95Y-06 12 88379677 88379677 G A C12orf50 Missense_Mutation p.S359F 0.43 tolerated(0.05) benign(0.033) TCGA-DA-A95Y-06 12 91501987 91501987 A G LUM Missense_Mutation p.V257A 0.62 deleterious(0) possibly_damaging(0.472) TCGA-DA-A95Y-06 12 9265088 9265088 G A A2M Silent p.V105V 0.30 TCGA-DA-A95Y-06 13 110814732 110814732 G A COL4A1 Missense_Mutation p.P1436L 0.45 unknown(0) TCGA-DA-A95Y-06 13 25030517 25030517 T G PARP4 Silent p.R842R 0.46 TCGA-DA-A95Y-06 13 25262603 25262603 C T ATP12A Silent p.L125L 0.36 TCGA-DA-A95Y-06 13 38162051 38162051 T C POSTN Missense_Mutation p.K172E 0.38 deleterious(0.01) possibly_damaging(0.626) TCGA-DA-A95Y-06 13 41639316 41639316 T C WBP4 Missense_Mutation p.L52P 0.37 deleterious(0) possibly_damaging(0.837) TCGA-DA-A95Y-06 13 60545091 60545091 G A DIAPH3 Silent p.F618F 0.30 TCGA-DA-A95Y-06 13 77672852 77672852 G C MYCBP2 Missense_Mutation p.P2775A 0.39 probably_damaging(0.991) TCGA-DA-A95Y-06 13 84455097 84455097 G A SLITRK1 Silent p.L182L 0.35 TCGA-DA-A95Y-06 13 95816687 95816687 G A ABCC4 Missense_Mutation p.A707V 0.30 deleterious(0) possibly_damaging(0.583) TCGA-DA-A95Y-06 13 99092249 99092249 A G FARP1 Missense_Mutation p.H823R 0.44 deleterious(0) possibly_damaging(0.857) TCGA-DA-A95Y-06 14 101348392 101348392 G A RTL1 Missense_Mutation p.P912S 0.43 tolerated(0.07) possibly_damaging(0.454) TCGA-DA-A95Y-06 14 105716464 105716464 C T BTBD6 Silent p.L305L 0.47 TCGA-DA-A95Y-06 14 19559057 19559057 C T POTEG Missense_Mutation p.P235S 0.13 tolerated(0.48) benign(0.217) TCGA-DA-A95Y-06 14 22237266 22237266 C T TRAV6 Missense_Mutation p.H115Y 0.46 tolerated(0.11) benign(0.029) TCGA-DA-A95Y-06 14 23896028 23896028 G A MYH7 Missense_Mutation p.H668Y 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 14 24543400 24543400 G A CPNE6 Intron 0.43 TCGA-DA-A95Y-06 14 24886071 24886071 C T NYNRIN Missense_Mutation p.R1706W 0.37 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-DA-A95Y-06 14 36841200 36841200 G A DPPA3P2 RNA 0.44 TCGA-DA-A95Y-06 14 42356959 42356959 C T LRFN5 Silent p.L377L 0.42 TCGA-DA-A95Y-06 14 45571853 45571853 C T PRPF39 Missense_Mutation p.R231C 0.41 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 14 64469452 64469452 C T SYNE2 Silent p.S1267S 0.45 TCGA-DA-A95Y-06 14 70496973 70496973 T A SMOC1 Nonstop_Mutation p.*436Kext*36 0.47 TCGA-DA-A95Y-06 14 70496975 70496975 A C SMOC1 Nonstop_Mutation p.*436Yext*36 0.47 TCGA-DA-A95Y-06 14 70634712 70634712 G A SLC8A3 Missense_Mutation p.S143F 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 15 23811697 23811697 G A MKRN3 Silent p.E256E 0.46 TCGA-DA-A95Y-06 15 35044898 35044898 C T GJD2 Silent p.E249E 0.48 TCGA-DA-A95Y-06 15 35082651 35082651 C T ACTC1 Missense_Mutation p.E366K 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.807) TCGA-DA-A95Y-06 15 40544649 40544649 G A C15orf56 Missense_Mutation p.P108L 0.62 tolerated_low_confidence(0.06) possibly_damaging(0.859) TCGA-DA-A95Y-06 15 43924938 43924938 T A CATSPER2 Missense_Mutation p.E458V 0.40 tolerated(0.13) benign(0.035) TCGA-DA-A95Y-06 15 43924939 43924939 C T CATSPER2 Missense_Mutation p.E458K 0.40 tolerated(0.58) benign(0.005) TCGA-DA-A95Y-06 15 44865890 44865890 G A SPG11 Silent p.L2020L 0.42 TCGA-DA-A95Y-06 15 49059313 49059313 T A CEP152 Missense_Mutation p.N742Y 0.31 deleterious(0.01) benign(0.203) TCGA-DA-A95Y-06 15 50544852 50544852 G A HDC Missense_Mutation p.P303S 0.53 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A95Y-06 15 51772872 51772872 C T DMXL2 Missense_Mutation p.R2144Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 15 52615590 52615601 GGCATGTGTTAG - MYO5A Nonsense_Mutation p.S1559_R1563delins* 0.20 TCGA-DA-A95Y-06 15 67555517 67555517 A T IQCH Missense_Mutation p.N78Y 0.47 deleterious(0.04) benign(0.173) TCGA-DA-A95Y-06 15 68506701 68506701 G A CLN6 Missense_Mutation p.P75L 0.35 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 15 68506702 68506702 G A CLN6 Missense_Mutation p.P75S 0.37 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 15 78927888 78927888 C T CHRNB4 Missense_Mutation p.D33N 0.32 tolerated(0.23) benign(0.003) TCGA-DA-A95Y-06 15 79339096 79339096 G A RASGRF1 Silent p.F290F 0.44 TCGA-DA-A95Y-06 15 84286923 84286923 G A SH3GL3 Missense_Mutation p.D310N 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 15 85326638 85326638 C T ZNF592 Silent p.F244F 0.34 TCGA-DA-A95Y-06 15 88472581 88472581 G T NTRK3 Missense_Mutation p.H658Q 0.26 tolerated(0.34) possibly_damaging(0.823) TCGA-DA-A95Y-06 15 90611125 90611125 T G ZNF710 Missense_Mutation p.S252R 0.43 tolerated(0.5) benign(0.003) TCGA-DA-A95Y-06 15 92987932 92987932 G A ST8SIA2 Missense_Mutation p.M205I 0.44 probably_damaging(0.989) TCGA-DA-A95Y-06 15 94943183 94943183 G A MCTP2 Missense_Mutation p.E642K 0.39 deleterious(0.02) possibly_damaging(0.486) TCGA-DA-A95Y-06 16 11071179 11071179 A G CLEC16A Missense_Mutation p.N276D 0.43 deleterious(0) probably_damaging(0.96) TCGA-DA-A95Y-06 16 20566619 20566619 C A ACSM2B Missense_Mutation p.G190W 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 16 26147117 26147117 G A HS3ST4 Missense_Mutation p.E307K 0.43 tolerated(0.14) possibly_damaging(0.859) TCGA-DA-A95Y-06 16 26147254 26147254 C T HS3ST4 Silent p.I352I 0.43 TCGA-DA-A95Y-06 16 28330371 28330371 C T SBK1 Silent p.F94F 0.40 TCGA-DA-A95Y-06 16 31435240 31435240 C T ITGAD Silent p.F1040F 0.48 TCGA-DA-A95Y-06 16 3777913 3777913 G A CREBBP Nonsense_Mutation p.Q2379* 0.42 TCGA-DA-A95Y-06 16 4310178 4310178 G A TFAP4 Silent p.S245S 0.54 TCGA-DA-A95Y-06 16 48209203 48209203 G A ABCC11 Missense_Mutation p.P1222S 0.43 deleterious(0.03) probably_damaging(0.992) TCGA-DA-A95Y-06 16 50335014 50335014 C T ADCY7 Silent p.A419A 0.14 TCGA-DA-A95Y-06 16 51173737 51173737 G A SALL1 Missense_Mutation p.P799L 0.40 deleterious(0.01) benign(0.189) TCGA-DA-A95Y-06 16 51175015 51175015 G A SALL1 Missense_Mutation p.S373L 0.38 deleterious(0) benign(0.178) TCGA-DA-A95Y-06 16 55705757 55705757 G A SLC6A2 Intron 0.40 TCGA-DA-A95Y-06 16 67683760 67683777 GGCGCAGGCGCTGGAGCA - RLTPR In_Frame_Del p.A658_Q663del 0.32 TCGA-DA-A95Y-06 16 67877442 67877442 C G THAP11 3'UTR 0.33 TCGA-DA-A95Y-06 16 71423679 71423679 T A CALB2 Missense_Mutation p.Y243N 0.20 deleterious(0) probably_damaging(0.962) TCGA-DA-A95Y-06 16 77775722 77775722 T G NUDT7 Missense_Mutation p.L198V 0.35 tolerated(0.1) benign(0.081) TCGA-DA-A95Y-06 16 80638297 80638297 A C CDYL2 Missense_Mutation p.I503M 0.10 deleterious(0.03) benign(0.004) TCGA-DA-A95Y-06 16 81324230 81324230 C T BCMO1 3'UTR 0.47 TCGA-DA-A95Y-06 16 89627334 89627334 C A RPL13 5'UTR 0.64 TCGA-DA-A95Y-06 17 10357883 10357883 G A MYH4 Nonsense_Mutation p.Q894* 0.39 TCGA-DA-A95Y-06 17 15517300 15517300 G A RP11-385D13.1 Silent p.L550L 0.36 TCGA-DA-A95Y-06 17 1640964 1640964 C T WDR81 Silent p.I1937I 0.59 TCGA-DA-A95Y-06 17 1968896 1968896 C A SMG6 Nonsense_Mutation p.E1305* 0.42 TCGA-DA-A95Y-06 17 21319835 21319835 G A KCNJ12 Missense_Mutation p.G394E 0.20 tolerated(0.56) benign(0) TCGA-DA-A95Y-06 17 27010811 27010811 G A SUPT6H Missense_Mutation p.E736K 0.54 deleterious(0) possibly_damaging(0.78) TCGA-DA-A95Y-06 17 30321720 30321720 C T SUZ12 Silent p.I525I 0.48 TCGA-DA-A95Y-06 17 3181778 3181778 C T OR3A2 Missense_Mutation p.R151K 0.36 tolerated(0.95) benign(0.005) TCGA-DA-A95Y-06 17 37374284 37374284 G A STAC2 Missense_Mutation p.S78F 0.50 tolerated(0.2) possibly_damaging(0.542) TCGA-DA-A95Y-06 17 3839698 3839698 T C ATP2A3 Missense_Mutation p.N796S 0.45 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Y-06 17 39165144 39165144 A T KRTAP3-1 Nonsense_Mutation p.Y61* 0.50 TCGA-DA-A95Y-06 17 39254167 39254167 G A KRTAP4-8 Missense_Mutation p.S57F 0.26 deleterious(0.02) unknown(0) TCGA-DA-A95Y-06 17 40574871 40574871 A T PTRF Missense_Mutation p.M82K 0.39 deleterious(0) possibly_damaging(0.774) TCGA-DA-A95Y-06 17 40692976 40692976 C T NAGLU Missense_Mutation p.P258L 0.41 deleterious(0) possibly_damaging(0.651) TCGA-DA-A95Y-06 17 40696040 40696040 C T NAGLU Silent p.T672T 0.52 TCGA-DA-A95Y-06 17 42476539 42476539 C T GPATCH8 Missense_Mutation p.R969Q 0.43 tolerated(0.12) unknown(0) TCGA-DA-A95Y-06 17 43924103 43924103 C T SPPL2C Missense_Mutation p.P611S 0.29 tolerated_low_confidence(0.06) benign(0.03) TCGA-DA-A95Y-06 17 4437131 4437131 A C SPNS2 Missense_Mutation p.T443P 0.28 deleterious(0.01) benign(0.066) TCGA-DA-A95Y-06 17 45892603 45892603 G A OSBPL7 Missense_Mutation p.S412F 0.50 deleterious(0.01) benign(0.303) TCGA-DA-A95Y-06 17 45897653 45897653 G A OSBPL7 5'UTR 0.33 TCGA-DA-A95Y-06 17 46671004 46671004 G A HOXB5 Missense_Mutation p.P14L 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A95Y-06 17 46671005 46671005 G A HOXB5 Missense_Mutation p.P14S 0.39 deleterious(0.05) probably_damaging(0.996) TCGA-DA-A95Y-06 17 5276721 5276721 A G RABEP1 Missense_Mutation p.E666G 0.59 deleterious(0) possibly_damaging(0.861) TCGA-DA-A95Y-06 17 55058499 55058499 G A SCPEP1 Missense_Mutation p.V45I 0.06 tolerated(0.06) benign(0.436) TCGA-DA-A95Y-06 17 58469387 58469387 G A USP32 5'UTR 0.36 TCGA-DA-A95Y-06 17 60754705 60754705 C T MRC2 Missense_Mutation p.S637L 0.36 deleterious(0.01) benign(0.054) TCGA-DA-A95Y-06 17 60837233 60837233 C T MARCH10 Silent p.R115R 0.42 TCGA-DA-A95Y-06 17 61910703 61910703 C T SMARCD2 Silent p.Q465Q 0.34 TCGA-DA-A95Y-06 17 6330343 6330343 C T AIPL1 Nonsense_Mutation p.W167* 0.45 TCGA-DA-A95Y-06 17 72860277 72860277 C T FDXR Missense_Mutation p.R375K 0.20 tolerated(0.37) benign(0.002) TCGA-DA-A95Y-06 17 72955004 72955004 A T HID1 Splice_Site p.X383_splice 0.36 TCGA-DA-A95Y-06 17 73282448 73282448 C T SLC25A19 Silent p.P75P 0.46 TCGA-DA-A95Y-06 17 74162547 74162547 C T RNF157 Missense_Mutation p.G208E 0.42 deleterious(0.03) benign(0.313) TCGA-DA-A95Y-06 17 7690246 7690246 C T DNAH2 Silent p.F2166F 0.41 TCGA-DA-A95Y-06 17 79866790 79866790 G A PCYT2 Missense_Mutation p.T101I 0.48 tolerated(0.73) benign(0.127) TCGA-DA-A95Y-06 17 7989385 7989385 C T ALOX12B Missense_Mutation p.A101T 0.23 deleterious(0.02) possibly_damaging(0.542) TCGA-DA-A95Y-06 17 8216356 8216356 C T ARHGEF15 Missense_Mutation p.R240W 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DA-A95Y-06 18 13645291 13645291 C T LDLRAD4 Missense_Mutation p.P186S 0.37 tolerated(0.09) probably_damaging(0.999) TCGA-DA-A95Y-06 18 18608797 18608797 G A ROCK1 Missense_Mutation p.P384L 0.42 deleterious(0) probably_damaging(0.968) TCGA-DA-A95Y-06 18 18608798 18608798 G A ROCK1 Missense_Mutation p.P384S 0.41 deleterious(0.03) probably_damaging(0.924) TCGA-DA-A95Y-06 18 2892192 2892192 G A EMILIN2 Silent p.K689K 0.42 TCGA-DA-A95Y-06 18 29444719 29444719 G A TRAPPC8 Silent p.V872V 0.49 TCGA-DA-A95Y-06 18 30092842 30092842 G A WBP11P1 RNA 0.38 TCGA-DA-A95Y-06 18 39573292 39573292 C T PIK3C3 Missense_Mutation p.P258L 0.22 tolerated(0.07) benign(0.091) TCGA-DA-A95Y-06 18 40854269 40854269 G A SYT4 Missense_Mutation p.S42L 0.43 tolerated(0.46) benign(0.164) TCGA-DA-A95Y-06 18 56651388 56651388 A G ZNF532 Missense_Mutation p.D1199G 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-DA-A95Y-06 18 61264411 61264411 C T SERPINB13 Silent p.F330F 0.42 TCGA-DA-A95Y-06 18 61584691 61584691 T C SERPINB10 Missense_Mutation p.V57A 0.42 tolerated(0.1) benign(0.252) TCGA-DA-A95Y-06 19 10127863 10127863 C T RDH8 Silent p.S98S 0.56 TCGA-DA-A95Y-06 19 1053403 1053403 T C ABCA7 Missense_Mutation p.L1099P 0.39 deleterious(0) possibly_damaging(0.905) TCGA-DA-A95Y-06 19 15272332 15272332 G A NOTCH3 Missense_Mutation p.P2036L 0.31 tolerated(0.38) benign(0.013) TCGA-DA-A95Y-06 19 1979640 1979640 C T CSNK1G2 Silent p.L334L 0.43 TCGA-DA-A95Y-06 19 20748612 20748612 C T ZNF737 5'Flank 0.36 TCGA-DA-A95Y-06 19 35940705 35940705 G A FFAR2 Missense_Mutation p.R30Q 0.30 tolerated(0.22) probably_damaging(0.936) TCGA-DA-A95Y-06 19 37644179 37644179 G A ZNF585A Missense_Mutation p.H153Y 0.50 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 19 38102620 38102620 A T ZNF540 Nonsense_Mutation p.K147* 0.60 TCGA-DA-A95Y-06 19 39039049 39039049 G A RYR1 Missense_Mutation p.D4091N 0.65 benign(0.002) TCGA-DA-A95Y-06 19 39230786 39230786 C T CAPN12 Missense_Mutation p.G212S 0.21 tolerated(0.78) possibly_damaging(0.492) TCGA-DA-A95Y-06 19 40095840 40095840 G A LGALS13 Missense_Mutation p.D39N 0.72 tolerated(0.27) possibly_damaging(0.791) TCGA-DA-A95Y-06 19 40225701 40225701 C T CLC Missense_Mutation p.E10K 0.64 tolerated(1) benign(0.005) TCGA-DA-A95Y-06 19 41007838 41007838 G A SPTBN4 Missense_Mutation p.M265I 0.26 tolerated(0.08) possibly_damaging(0.459) TCGA-DA-A95Y-06 19 41712004 41712004 G A CYP2S1 Missense_Mutation p.G436R 0.31 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Y-06 19 42471915 42471915 C T ATP1A3 Silent p.K953K 0.60 TCGA-DA-A95Y-06 19 43680223 43680223 C T PSG5 Missense_Mutation p.E170K 0.54 deleterious(0.01) possibly_damaging(0.671) TCGA-DA-A95Y-06 19 43979567 43979567 G A PHLDB3 Missense_Mutation p.P640S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A95Y-06 19 43979568 43979568 G A PHLDB3 Silent p.A639A 0.31 TCGA-DA-A95Y-06 19 45867706 45867706 C A ERCC2 Missense_Mutation p.V232F 0.27 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Y-06 19 47844260 47844260 G A C5AR2 Silent p.V68V 0.31 TCGA-DA-A95Y-06 19 47844261 47844261 G A C5AR2 Missense_Mutation p.G69S 0.30 tolerated(0.25) benign(0.11) TCGA-DA-A95Y-06 19 4891561 4891561 C T ARRDC5 Missense_Mutation p.E176K 0.50 tolerated(1) benign(0) TCGA-DA-A95Y-06 19 49631305 49631305 C T PPFIA3 Missense_Mutation p.R59W 0.62 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Y-06 19 51273857 51273857 C T GPR32 5'UTR 0.54 TCGA-DA-A95Y-06 19 51325160 51325160 G A KLK1 Intron 0.44 TCGA-DA-A95Y-06 19 51646022 51646022 G A SIGLEC7 Nonsense_Mutation p.W132* 0.41 TCGA-DA-A95Y-06 19 52955116 52955116 A G ZNF578 5'Flank 0.26 TCGA-DA-A95Y-06 19 54292012 54292012 G A NLRP12 3'Flank 0.38 TCGA-DA-A95Y-06 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.15 tolerated(0.26) probably_damaging(0.999) TCGA-DA-A95Y-06 19 54561799 54561799 A G VSTM1 Missense_Mutation p.V39A 0.33 tolerated(0.1) benign(0.143) TCGA-DA-A95Y-06 19 54705403 54705403 C T RPS9 Missense_Mutation p.T49I 0.58 tolerated(0.33) benign(0.024) TCGA-DA-A95Y-06 19 55146187 55146187 C T LILRB1 Nonsense_Mutation p.R487* 0.39 TCGA-DA-A95Y-06 19 55221908 55221908 C T AC098784.2 3'Flank 0.60 TCGA-DA-A95Y-06 19 57286728 57286728 C T ZIM2 Silent p.K304K 0.15 TCGA-DA-A95Y-06 19 9008218 9008218 C T MUC16 Missense_Mutation p.E13112K 0.42 possibly_damaging(0.739) TCGA-DA-A95Y-06 19 9056878 9056878 G A MUC16 Missense_Mutation p.P10190S 0.32 benign(0) TCGA-DA-A95Y-06 19 9082680 9082680 G A MUC16 Silent p.P3045P 0.38 TCGA-DA-A95Y-06 19 9083889 9083889 A T MUC16 Silent p.T2642T 0.41 TCGA-DA-A95Y-06 19 9083927 9083927 G A MUC16 Missense_Mutation p.P2630S 0.46 unknown(0) TCGA-DA-A95Y-06 19 9408559 9408559 C A ZNF699 Nonsense_Mutation p.E95* 0.40 TCGA-DA-A95Y-06 19 9579860 9579860 C T ZNF560 Nonsense_Mutation p.W178* 0.43 TCGA-DA-A95Y-06 1 109793958 109793958 C T CELSR2 Silent p.L419L 0.22 TCGA-DA-A95Y-06 1 109793959 109793959 C T CELSR2 Nonsense_Mutation p.R420* 0.22 TCGA-DA-A95Y-06 1 11174428 11174428 G A MTOR Missense_Mutation p.A2416V 0.52 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Y-06 1 111862928 111862928 C T CHIA Missense_Mutation p.S424L 0.53 tolerated(0.25) benign(0.017) TCGA-DA-A95Y-06 1 11875927 11875927 A T CLCN6 Missense_Mutation p.N58Y 0.42 deleterious(0) possibly_damaging(0.873) TCGA-DA-A95Y-06 1 1249376 1249376 C T CPSF3L Intron 0.57 TCGA-DA-A95Y-06 1 12921385 12921385 C T PRAMEF2 Silent p.D392D 0.18 TCGA-DA-A95Y-06 1 12980080 12980080 C T PRAMEF7 Silent p.L424L 0.33 TCGA-DA-A95Y-06 1 145761347 145761347 G A PDZK1 Missense_Mutation p.G387D 0.42 deleterious(0) probably_damaging(0.973) TCGA-DA-A95Y-06 1 152127250 152127250 G A RPTN Silent p.T775T 0.51 TCGA-DA-A95Y-06 1 152281174 152281174 C T FLG Missense_Mutation p.G2063E 0.34 probably_damaging(0.931) TCGA-DA-A95Y-06 1 152286602 152286602 T A FLG Missense_Mutation p.N254Y 0.52 probably_damaging(0.953) TCGA-DA-A95Y-06 1 152382237 152382237 C T CRNN Missense_Mutation p.E441K 0.58 deleterious(0.01) probably_damaging(0.977) TCGA-DA-A95Y-06 1 154207165 154207165 G A UBAP2L Silent p.R126R 0.29 TCGA-DA-A95Y-06 1 154207166 154207166 G A UBAP2L Missense_Mutation p.D127N 0.30 deleterious(0.03) unknown(0) TCGA-DA-A95Y-06 1 154316671 154316671 C T ATP8B2 Missense_Mutation p.T692I 0.51 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Y-06 1 155208418 155208420 CCC TTT GBA Missense_Mutation p.RV159QI 0.15 TCGA-DA-A95Y-06 1 155208433 155208433 A G GBA Missense_Mutation p.Y155H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 1 156106949 156106949 C T LMNA Silent p.L512L 0.23 TCGA-DA-A95Y-06 1 156618366 156618366 T G BCAN Missense_Mutation p.L259R 0.34 tolerated(0.09) probably_damaging(0.997) TCGA-DA-A95Y-06 1 156815462 156815462 G A INSRR Missense_Mutation p.S708L 0.52 tolerated(0.07) benign(0.054) TCGA-DA-A95Y-06 1 15767085 15767085 A G CTRC Missense_Mutation p.S77G 0.52 deleterious(0.03) benign(0.102) TCGA-DA-A95Y-06 1 158724701 158724701 G A OR6K6 Silent p.G32G 0.49 TCGA-DA-A95Y-06 1 161168119 161168119 G A ADAMTS4 Missense_Mutation p.S100F 0.57 tolerated(0.07) benign(0.255) TCGA-DA-A95Y-06 1 1685640 1685640 G A NADK Silent p.I462I 0.50 TCGA-DA-A95Y-06 1 16892212 16892212 C T NBPF1 Missense_Mutation p.E994K 0.03 deleterious(0.03) possibly_damaging(0.858) TCGA-DA-A95Y-06 1 169672464 169672464 A C SELL Nonsense_Mutation p.L308* 0.39 TCGA-DA-A95Y-06 1 169702104 169702104 T G SELE Missense_Mutation p.N25H 0.34 tolerated(0.82) benign(0.002) TCGA-DA-A95Y-06 1 17085023 17085023 G A MST1L RNA 0.10 TCGA-DA-A95Y-06 1 171178143 171178143 C T FMO2 3'UTR 0.54 TCGA-DA-A95Y-06 1 171510873 171510873 G A PRRC2C Missense_Mutation p.R1421Q 0.31 unknown(0) TCGA-DA-A95Y-06 1 172100371 172100371 G A DNM3 Silent p.S534S 0.52 TCGA-DA-A95Y-06 1 176913114 176913114 C T ASTN1 Missense_Mutation p.D764N 0.44 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.57 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Y-06 1 197316496 197316496 G A CRB1 Missense_Mutation p.G292E 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 1 201915393 201915393 G A LMOD1 Missense_Mutation p.P26S 0.25 probably_damaging(1) TCGA-DA-A95Y-06 1 202097645 202097645 G A GPR37L1 Silent p.R469R 0.79 TCGA-DA-A95Y-06 1 202163290 202163290 C T LGR6 Missense_Mutation p.S58F 0.22 deleterious(0) possibly_damaging(0.882) TCGA-DA-A95Y-06 1 20232954 20232954 C T OTUD3 Nonsense_Mutation p.R289* 0.34 TCGA-DA-A95Y-06 1 20417197 20417197 G A PLA2G5 3'UTR 0.36 TCGA-DA-A95Y-06 1 208206691 208206691 G A PLXNA2 Silent p.I1676I 0.22 TCGA-DA-A95Y-06 1 209797063 209797063 G A LAMB3 Silent p.F715F 0.25 TCGA-DA-A95Y-06 1 223441883 223441883 G A SUSD4 Missense_Mutation p.R166C 0.49 tolerated(0.06) possibly_damaging(0.79) TCGA-DA-A95Y-06 1 227227857 227227857 T C CDC42BPA Silent p.L1023L 0.42 TCGA-DA-A95Y-06 1 233511794 233511794 G A MLK4 Missense_Mutation p.R603K 0.66 tolerated(0.11) possibly_damaging(0.463) TCGA-DA-A95Y-06 1 235324629 235324629 C T RBM34 5'UTR 0.15 TCGA-DA-A95Y-06 1 237791254 237791254 C T RYR2 Missense_Mutation p.T2105I 0.42 possibly_damaging(0.76) TCGA-DA-A95Y-06 1 244798840 244798840 C T C1orf101 Missense_Mutation p.P900S 0.18 tolerated(0.1) benign(0.297) TCGA-DA-A95Y-06 1 247719744 247719744 G A GCSAML Missense_Mutation p.G22E 0.23 tolerated(0.69) benign(0.008) TCGA-DA-A95Y-06 1 248525605 248525605 C T OR2T4 Silent p.I241I 0.67 TCGA-DA-A95Y-06 1 248789661 248789661 C T OR2T11 Missense_Mutation p.V257M 0.73 tolerated(1) benign(0.357) TCGA-DA-A95Y-06 1 27106618 27106618 C T ARID1A Missense_Mutation p.P2077S 0.33 possibly_damaging(0.67) TCGA-DA-A95Y-06 1 34008494 34008494 T G CSMD2 Missense_Mutation p.I2891L 0.36 deleterious(0.03) benign(0.005) TCGA-DA-A95Y-06 1 36564723 36564723 G A COL8A2 Nonsense_Mutation p.Q187* 0.65 TCGA-DA-A95Y-06 1 36889025 36889025 G A OSCP1 Missense_Mutation p.R187C 0.07 deleterious(0) probably_damaging(0.961) TCGA-DA-A95Y-06 1 39757585 39757585 A G MACF1 Missense_Mutation p.K602E 0.42 benign(0.075) TCGA-DA-A95Y-06 1 43055111 43055111 C T CCDC30 Missense_Mutation p.A447V 0.49 tolerated(0.13) benign(0.314) TCGA-DA-A95Y-06 1 45212421 45212421 C T KIF2C Intron 0.38 TCGA-DA-A95Y-06 1 47333787 47333787 G A CYP4Z2P RNA 0.38 TCGA-DA-A95Y-06 1 62675869 62675869 G A L1TD1 Missense_Mutation p.D475N 0.22 tolerated(0.12) benign(0.19) TCGA-DA-A95Y-06 1 77094524 77094524 A T ST6GALNAC3 3'UTR 0.27 TCGA-DA-A95Y-06 1 92470689 92470689 G A BRDT Missense_Mutation p.G870R 0.47 deleterious(0.02) benign(0.005) TCGA-DA-A95Y-06 1 92573536 92573536 G A BTBD8 Missense_Mutation p.G214R 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Y-06 1 97547995 97547995 C T DPYD Missense_Mutation p.G933E 0.50 deleterious(0.04) probably_damaging(0.99) TCGA-DA-A95Y-06 20 16354955 16354955 G A KIF16B Silent p.S1099S 0.75 TCGA-DA-A95Y-06 20 37383742 37383742 G A ACTR5 Silent p.Q306Q 0.20 TCGA-DA-A95Y-06 20 377134 377134 C A TRIB3 Missense_Mutation p.R293S 0.78 tolerated(0.06) benign(0.211) TCGA-DA-A95Y-06 20 42249501 42249501 T C IFT52 Missense_Mutation p.V235A 0.26 tolerated(0.09) benign(0.091) TCGA-DA-A95Y-06 20 42683124 42683124 C T TOX2 Silent p.I279I 0.69 TCGA-DA-A95Y-06 20 42935198 42935198 A C FITM2 3'UTR 0.23 TCGA-DA-A95Y-06 20 44171379 44171379 G A EPPIN Silent p.F117F 0.75 TCGA-DA-A95Y-06 20 45130263 45130263 T C ZNF334 Missense_Mutation p.Y572C 0.63 deleterious(0.02) probably_damaging(0.979) TCGA-DA-A95Y-06 20 60902007 60902007 C T LAMA5 Missense_Mutation p.G1710R 0.15 benign(0.086) TCGA-DA-A95Y-06 21 10933918 10933918 C T TPTE Missense_Mutation p.E321K 0.19 tolerated(0.08) possibly_damaging(0.574) TCGA-DA-A95Y-06 21 11029651 11029651 C T BAGE2 RNA 0.14 TCGA-DA-A95Y-06 21 15882723 15882723 C T SAMSN1 Missense_Mutation p.D225N 0.54 tolerated(0.12) benign(0.043) TCGA-DA-A95Y-06 21 37758395 37758395 G T CHAF1B 5'UTR 0.43 TCGA-DA-A95Y-06 21 40194612 40194612 G C ETS2 Missense_Mutation p.W403C 0.42 deleterious(0) probably_damaging(0.993) TCGA-DA-A95Y-06 21 41711060 41711060 C T DSCAM Missense_Mutation p.R498Q 0.56 deleterious(0.03) probably_damaging(1) TCGA-DA-A95Y-06 22 16287391 16287391 G A POTEH Silent p.F165F 0.17 TCGA-DA-A95Y-06 22 21989490 21989490 C T CCDC116 Missense_Mutation p.R380C 0.57 deleterious(0.04) benign(0.033) TCGA-DA-A95Y-06 22 22550565 22550565 G A IGLV6-57 Missense_Mutation p.R81Q 0.43 deleterious_low_confidence(0) benign(0.35) TCGA-DA-A95Y-06 22 25246291 25246291 C T SGSM1 Missense_Mutation p.P116L 0.59 tolerated(0.16) possibly_damaging(0.612) TCGA-DA-A95Y-06 22 25603019 25603019 T C CRYBB3 Missense_Mutation p.V159A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Y-06 22 26743737 26743737 G A SEZ6L Nonsense_Mutation p.W755* 0.40 TCGA-DA-A95Y-06 22 28193775 28193775 G A MN1 Silent p.S919S 0.38 TCGA-DA-A95Y-06 22 30866566 30866566 G A SEC14L3 Nonsense_Mutation p.R20* 0.33 TCGA-DA-A95Y-06 22 32587270 32587270 C T RFPL2 Missense_Mutation p.R209Q 0.41 tolerated(0.42) benign(0.004) TCGA-DA-A95Y-06 22 37769832 37769832 G A ELFN2 Silent p.L581L 0.48 TCGA-DA-A95Y-06 22 38328859 38328859 A G MICALL1 Missense_Mutation p.H733R 0.33 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Y-06 22 40417813 40417813 C T FAM83F Silent p.A433A 0.34 TCGA-DA-A95Y-06 22 40803510 40803510 C T SGSM3 Silent p.L488L 0.51 TCGA-DA-A95Y-06 22 41609716 41609716 C T L3MBTL2 Intron 0.58 TCGA-DA-A95Y-06 22 41742161 41742161 C T ZC3H7B Silent p.T538T 0.54 TCGA-DA-A95Y-06 2 101611988 101611988 C T NPAS2 Missense_Mutation p.P807S 0.33 tolerated_low_confidence(0.98) unknown(0) TCGA-DA-A95Y-06 2 102460608 102460608 C T MAP4K4 Silent p.F356F 0.45 TCGA-DA-A95Y-06 2 103013022 103013022 G A IL18R1 Silent p.E434E 0.38 TCGA-DA-A95Y-06 2 108488126 108488126 G A RGPD4 Silent p.K1222K 0.30 TCGA-DA-A95Y-06 2 112536329 112536329 G A ANAPC1 Missense_Mutation p.L1770F 0.17 tolerated(0.14) benign(0.017) TCGA-DA-A95Y-06 2 113820306 113820306 G A IL36RN 3'UTR 0.40 TCGA-DA-A95Y-06 2 118586998 118586998 T C DDX18 Missense_Mutation p.V609A 0.39 deleterious(0.01) benign(0.302) TCGA-DA-A95Y-06 2 128327388 128327388 G A MYO7B Silent p.T165T 0.50 TCGA-DA-A95Y-06 2 130725895 130725895 G A RAB6C-AS1 RNA 0.44 TCGA-DA-A95Y-06 2 130877683 130877683 G A POTEF Missense_Mutation p.R136C 0.33 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-DA-A95Y-06 2 135470838 135470838 C T TMEM163 Missense_Mutation p.R85K 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-DA-A95Y-06 2 137988686 137988686 G A THSD7B Missense_Mutation p.R599Q 0.41 deleterious(0.02) benign(0.417) TCGA-DA-A95Y-06 2 149226227 149226227 C T MBD5 Missense_Mutation p.P239S 0.37 deleterious(0) possibly_damaging(0.803) TCGA-DA-A95Y-06 2 149243454 149243454 G A MBD5 Missense_Mutation p.G997R 0.42 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Y-06 2 149243455 149243455 G T MBD5 Missense_Mutation p.G997V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Y-06 2 158958598 158958598 C T UPP2 Missense_Mutation p.S65F 0.34 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-DA-A95Y-06 2 166165719 166165719 G A SCN2A Missense_Mutation p.R217Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 2 167055586 167055586 C T SCN9A Missense_Mutation p.E1844K 0.41 deleterious(0) possibly_damaging(0.87) TCGA-DA-A95Y-06 2 177016648 177016648 G A HOXD4 Missense_Mutation p.C96Y 0.33 tolerated(0.19) possibly_damaging(0.753) TCGA-DA-A95Y-06 2 179399193 179399193 A C TTN Missense_Mutation p.V34050G 0.08 TCGA-DA-A95Y-06 2 179465615 179465615 G A TTN Silent p.A18672A 0.44 TCGA-DA-A95Y-06 2 179553469 179553469 C T TTN Missense_Mutation p.R10711K 0.39 TCGA-DA-A95Y-06 2 179598513 179598513 C T TTN Nonsense_Mutation p.W5201* 0.38 TCGA-DA-A95Y-06 2 179664595 179664595 G A TTN Missense_Mutation p.S209L 0.30 TCGA-DA-A95Y-06 2 185801846 185801846 G A ZNF804A Missense_Mutation p.E575K 0.38 tolerated(0.12) benign(0.05) TCGA-DA-A95Y-06 2 187703804 187703804 C T ZSWIM2 Missense_Mutation p.E126K 0.43 tolerated(0.54) benign(0.003) TCGA-DA-A95Y-06 2 190531640 190531640 C T ASNSD1 Missense_Mutation p.S261F 0.41 tolerated(0.16) possibly_damaging(0.643) TCGA-DA-A95Y-06 2 192700839 192700839 C T SDPR Missense_Mutation p.G363E 0.41 tolerated_low_confidence(0.76) benign(0.019) TCGA-DA-A95Y-06 2 197539045 197539045 C T CCDC150 Silent p.I370I 0.36 TCGA-DA-A95Y-06 2 206036986 206036986 C G PARD3B Missense_Mutation p.L496V 0.47 tolerated(0.19) probably_damaging(0.999) TCGA-DA-A95Y-06 2 207603162 207603162 T C MDH1B 3'UTR 0.32 TCGA-DA-A95Y-06 2 211336788 211336788 A G LANCL1 Missense_Mutation p.F32L 0.40 tolerated(0.08) benign(0.046) TCGA-DA-A95Y-06 2 219529172 219529172 G A RNF25 Silent p.T296T 0.40 TCGA-DA-A95Y-06 2 219529173 219529173 G A RNF25 Missense_Mutation p.T296I 0.39 tolerated(0.18) benign(0.007) TCGA-DA-A95Y-06 2 220251688 220251688 G A DNPEP Missense_Mutation p.R49C 0.34 deleterious(0.01) benign(0.168) TCGA-DA-A95Y-06 2 220251689 220251689 G A DNPEP Silent p.C48C 0.33 TCGA-DA-A95Y-06 2 220348009 220348009 G T SPEG Nonsense_Mutation p.E1942* 0.36 TCGA-DA-A95Y-06 2 220405076 220405076 G A CHPF Nonsense_Mutation p.R453* 0.36 TCGA-DA-A95Y-06 2 220405077 220405077 G A CHPF Silent p.Y452Y 0.34 TCGA-DA-A95Y-06 2 238785912 238785912 T C RAMP1 Silent p.G33G 0.38 TCGA-DA-A95Y-06 2 239005502 239005502 C T SCLY Missense_Mutation p.S398L 0.36 deleterious(0) possibly_damaging(0.865) TCGA-DA-A95Y-06 2 239237345 239237345 G A TRAF3IP1 Missense_Mutation p.V125M 0.37 deleterious(0) probably_damaging(0.926) TCGA-DA-A95Y-06 2 31133666 31133666 G A GALNT14 3'UTR 0.48 TCGA-DA-A95Y-06 2 32475182 32475182 A G NLRC4 Missense_Mutation p.L584S 0.43 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 2 43452511 43452512 - C ZFP36L2 Frame_Shift_Ins p.G145Rfs*329 0.27 TCGA-DA-A95Y-06 2 43571333 43571333 G C THADA Missense_Mutation p.T1424R 0.29 tolerated(0.24) benign(0.03) TCGA-DA-A95Y-06 2 51254820 51254820 C T NRXN1 Missense_Mutation p.D198N 0.50 tolerated(0.69) benign(0.003) TCGA-DA-A95Y-06 2 61308605 61308605 C T KIAA1841 Missense_Mutation p.S230L 0.33 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Y-06 2 79363190 79363190 G A REG1P RNA 0.59 TCGA-DA-A95Y-06 3 108572520 108572520 G A TRAT1 Silent p.G119G 0.72 TCGA-DA-A95Y-06 3 108677713 108677713 G A MORC1 3'UTR 0.79 TCGA-DA-A95Y-06 3 108773644 108773644 G A MORC1 Nonsense_Mutation p.Q421* 0.93 TCGA-DA-A95Y-06 3 121178898 121178898 T C POLQ Missense_Mutation p.Q2384R 0.80 deleterious(0.01) probably_damaging(0.988) TCGA-DA-A95Y-06 3 125786790 125786790 C T SLC41A3 Silent p.Q91Q 0.82 TCGA-DA-A95Y-06 3 126747937 126747937 C T PLXNA1 Nonsense_Mutation p.Q1591* 0.73 TCGA-DA-A95Y-06 3 128864693 128864693 G A ISY1 Missense_Mutation p.R71C 0.30 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Y-06 3 14861992 14861992 C T FGD5 Missense_Mutation p.P472S 0.56 tolerated(0.41) benign(0.003) TCGA-DA-A95Y-06 3 164764738 164764738 C T SI Missense_Mutation p.G593E 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 3 169501336 169501336 C T MYNN Missense_Mutation p.R491W 0.58 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Y-06 3 17052063 17052063 C T PLCL2 Missense_Mutation p.L283F 0.49 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Y-06 3 184100176 184100176 G A CHRD Splice_Site p.X234_splice 0.37 TCGA-DA-A95Y-06 3 188590501 188590501 C T LPP Missense_Mutation p.R554C 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 3 193023429 193023429 G A ATP13A5 Missense_Mutation p.S866L 0.39 deleterious(0.04) benign(0.082) TCGA-DA-A95Y-06 3 194062942 194062942 G A CPN2 Missense_Mutation p.L164F 0.41 tolerated(0.07) benign(0.202) TCGA-DA-A95Y-06 3 36897819 36897819 C T TRANK1 Missense_Mutation p.E1088K 0.23 tolerated(0.18) benign(0.064) TCGA-DA-A95Y-06 3 38647565 38647565 C T SCN5A Silent p.V405V 0.22 TCGA-DA-A95Y-06 3 38784016 38784016 G A SCN10A Silent p.L624L 0.24 TCGA-DA-A95Y-06 3 38913713 38913713 G A SCN11A Missense_Mutation p.R1156C 0.47 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 3 48456696 48456696 G A PLXNB1 Silent p.I1285I 0.24 TCGA-DA-A95Y-06 3 49898918 49898918 G A CAMKV Missense_Mutation p.A132V 0.29 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 3 50368045 50368045 G A RASSF1 Silent p.I334I 0.52 TCGA-DA-A95Y-06 3 7620310 7620310 C T GRM7 Nonsense_Mutation p.R573* 0.57 TCGA-DA-A95Y-06 3 8667260 8667260 C T SSUH2 Missense_Mutation p.G281R 0.55 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 3 9780764 9780764 C T BRPF1 Silent p.I227I 0.65 TCGA-DA-A95Y-06 4 100208792 100208792 C T ADH1A Missense_Mutation p.E17K 0.31 tolerated(0.15) benign(0.177) TCGA-DA-A95Y-06 4 101338275 101338275 G A EMCN Nonsense_Mutation p.Q230* 0.40 TCGA-DA-A95Y-06 4 104054021 104054021 G A CENPE Silent p.F2251F 0.41 TCGA-DA-A95Y-06 4 104640567 104640567 G A TACR3 Missense_Mutation p.S89F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 4 120182982 120182982 C T USP53 Missense_Mutation p.S312F 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-DA-A95Y-06 4 128751894 128751894 C A HSPA4L Missense_Mutation p.N756K 0.14 tolerated(0.64) benign(0.009) TCGA-DA-A95Y-06 4 13601033 13601033 C T BOD1L1 Silent p.G2497G 0.48 TCGA-DA-A95Y-06 4 141600794 141600794 A C TBC1D9 Missense_Mutation p.F188L 0.46 deleterious(0) benign(0.157) TCGA-DA-A95Y-06 4 145032374 145032374 C T GYPA 3'UTR 0.38 TCGA-DA-A95Y-06 4 146059003 146059003 A G OTUD4 Missense_Mutation p.V910A 0.31 tolerated(1) benign(0.004) TCGA-DA-A95Y-06 4 148461574 148461574 G A EDNRA Missense_Mutation p.M360I 0.07 tolerated(0.53) benign(0.007) TCGA-DA-A95Y-06 4 158256990 158256990 G A GRIA2 Silent p.T478T 0.43 TCGA-DA-A95Y-06 4 164246548 164246548 C T NPY1R Silent p.T354T 0.39 TCGA-DA-A95Y-06 4 174254047 174254047 C A HMGB2 Missense_Mutation p.M132I 0.37 tolerated(0.07) benign(0.053) TCGA-DA-A95Y-06 4 178274790 178274790 A G NEIL3 Silent p.E456E 0.41 TCGA-DA-A95Y-06 4 184615120 184615120 G A TRAPPC11 Missense_Mutation p.E813K 0.39 tolerated(0.47) possibly_damaging(0.874) TCGA-DA-A95Y-06 4 23831185 23831185 T C PPARGC1A Silent p.P151P 0.40 TCGA-DA-A95Y-06 4 40045545 40045545 G A RP11-333E13.4 RNA 0.43 TCGA-DA-A95Y-06 4 46979137 46979137 G A GABRA4 Missense_Mutation p.P173L 0.37 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Y-06 4 46979138 46979138 G A GABRA4 Missense_Mutation p.P173S 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 4 46979139 46979139 A C GABRA4 Missense_Mutation p.C172W 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 4 65145725 65145725 C T TECRL 3'UTR 0.54 TCGA-DA-A95Y-06 4 70066200 70066200 G A UGT2B11 Silent p.F516F 0.40 TCGA-DA-A95Y-06 4 73148867 73148867 T C ADAMTS3 Missense_Mutation p.T1202A 0.43 tolerated_low_confidence(0.14) benign(0.002) TCGA-DA-A95Y-06 4 76841069 76841069 A C NAAA Missense_Mutation p.L321R 0.48 deleterious(0) probably_damaging(0.977) TCGA-DA-A95Y-06 4 76841070 76841070 G A NAAA Missense_Mutation p.L321F 0.47 deleterious(0) benign(0.216) TCGA-DA-A95Y-06 4 81504315 81504315 A T C4orf22 Missense_Mutation p.D104V 0.08 tolerated(0.28) benign(0.205) TCGA-DA-A95Y-06 4 82090854 82090854 G A PRKG2 Nonsense_Mutation p.Q271* 0.36 TCGA-DA-A95Y-06 4 83417289 83417289 G A TMEM150C Silent p.L99L 0.53 TCGA-DA-A95Y-06 5 110784884 110784884 G A CAMK4 Missense_Mutation p.G203E 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 5 111500777 111500777 T C EPB41L4A Silent p.K657K 0.48 TCGA-DA-A95Y-06 5 118969914 118969914 G A FAM170A Silent p.R157R 0.58 TCGA-DA-A95Y-06 5 121187787 121187787 C T FTMT Silent p.I43I 0.54 TCGA-DA-A95Y-06 5 121358098 121358098 C T SRFBP1 Silent p.S367S 0.52 TCGA-DA-A95Y-06 5 121786523 121786523 G A SNCAIP Missense_Mutation p.E661K 0.52 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Y-06 5 128320851 128320851 C T SLC27A6 Silent p.I169I 0.46 TCGA-DA-A95Y-06 5 131289978 131289978 C T ACSL6 Silent p.L706L 0.44 TCGA-DA-A95Y-06 5 13769663 13769663 C T DNAH5 Missense_Mutation p.E3223K 0.31 possibly_damaging(0.621) TCGA-DA-A95Y-06 5 13830235 13830235 G A DNAH5 Missense_Mutation p.S2050F 0.33 possibly_damaging(0.788) TCGA-DA-A95Y-06 5 13862672 13862672 G A DNAH5 Missense_Mutation p.S1594F 0.21 possibly_damaging(0.788) TCGA-DA-A95Y-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.28 probably_damaging(0.931) TCGA-DA-A95Y-06 5 140168388 140168388 C T PCDHA1 Intron 0.57 TCGA-DA-A95Y-06 5 140241034 140241034 C T AC005609.1 3'UTR 0.23 TCGA-DA-A95Y-06 5 140740420 140740420 C T PCDHGB2 Missense_Mutation p.P240S 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 5 140762857 140762857 C T PCDHGA7 Missense_Mutation p.P131S 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A95Y-06 5 14492821 14492821 G C TRIO Missense_Mutation p.R2593P 0.19 benign(0.013) TCGA-DA-A95Y-06 5 145317858 145317858 C T SH3RF2 Missense_Mutation p.H123Y 0.62 tolerated(0.05) probably_damaging(0.953) TCGA-DA-A95Y-06 5 147491343 147491343 G A SPINK5 Missense_Mutation p.E569K 0.54 tolerated(0.16) probably_damaging(0.992) TCGA-DA-A95Y-06 5 156479658 156479658 G A HAVCR1 Silent p.V129V 0.27 TCGA-DA-A95Y-06 5 156635934 156635934 C T ITK Missense_Mutation p.S58F 0.66 deleterious(0.01) probably_damaging(0.967) TCGA-DA-A95Y-06 5 160113109 160113109 G A ATP10B Silent p.C149C 0.25 TCGA-DA-A95Y-06 5 161322750 161322750 C T GABRA1 Missense_Mutation p.A312V 0.27 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Y-06 5 169680136 169680136 G A LCP2 Missense_Mutation p.P411L 0.43 tolerated(0.18) benign(0.002) TCGA-DA-A95Y-06 5 177022329 177022329 C T TMED9 Missense_Mutation p.S207F 0.25 deleterious(0.02) possibly_damaging(0.591) TCGA-DA-A95Y-06 5 35910511 35910511 C T CAPSL Missense_Mutation p.G91E 0.49 tolerated(0.05) benign(0.096) TCGA-DA-A95Y-06 5 40962248 40962248 C T C7 Missense_Mutation p.P575S 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 5 40981726 40981726 C T C7 3'UTR 0.50 TCGA-DA-A95Y-06 5 41181595 41181595 C T C6 Missense_Mutation p.E265K 0.34 tolerated(0.83) benign(0) TCGA-DA-A95Y-06 5 43161632 43161632 C T ZNF131 Missense_Mutation p.T218I 0.44 deleterious(0.03) probably_damaging(0.998) TCGA-DA-A95Y-06 5 43161633 43161633 C T ZNF131 Silent p.T218T 0.45 TCGA-DA-A95Y-06 5 5146547 5146547 C T ADAMTS16 Silent p.A160A 0.35 TCGA-DA-A95Y-06 5 71493110 71493110 T C MAP1B Missense_Mutation p.C1310R 0.28 possibly_damaging(0.871) TCGA-DA-A95Y-06 5 72469279 72469279 G A TMEM174 Nonsense_Mutation p.W70* 0.25 TCGA-DA-A95Y-06 6 100841584 100841584 G A SIM1 Missense_Mutation p.A450V 0.43 deleterious_low_confidence(0.03) benign(0.146) TCGA-DA-A95Y-06 6 108227669 108227669 G A SEC63 Missense_Mutation p.P315L 0.79 deleterious(0) probably_damaging(0.936) TCGA-DA-A95Y-06 6 116427454 116427454 C A NT5DC1 Nonsense_Mutation p.Y47* 0.72 TCGA-DA-A95Y-06 6 13206131 13206131 C T PHACTR1 Missense_Mutation p.P250L 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-DA-A95Y-06 6 136599694 136599694 G A BCLAF1 Missense_Mutation p.R109C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Y-06 6 152583322 152583322 C T SYNE1 Missense_Mutation p.E6273K 0.86 benign(0.062) TCGA-DA-A95Y-06 6 167550863 167550863 A G CCR6 3'UTR 0.84 TCGA-DA-A95Y-06 6 28554272 28554272 C T SCAND3 Missense_Mutation p.E75K 0.32 tolerated_low_confidence(0.17) benign(0.014) TCGA-DA-A95Y-06 6 30691752 30691752 C T TUBB Missense_Mutation p.P305S 0.24 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DA-A95Y-06 6 31084743 31084743 G A CDSN Missense_Mutation p.P217S 0.25 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Y-06 6 31748221 31748221 G A VARS Silent p.S974S 0.28 TCGA-DA-A95Y-06 6 32017129 32017129 C T TNXB 5'Flank 0.28 TCGA-DA-A95Y-06 6 32170069 32170069 C T NOTCH4 Missense_Mutation p.G1180D 0.43 tolerated(0.29) probably_damaging(1) TCGA-DA-A95Y-06 6 32945974 32945975 - A BRD2 Frame_Shift_Ins p.E553Rfs*19 0.18 TCGA-DA-A95Y-06 6 34499494 34499494 C T PACSIN1 Silent p.S385S 0.55 TCGA-DA-A95Y-06 6 34840099 34840099 C T UHRF1BP1 Silent p.L1403L 0.55 TCGA-DA-A95Y-06 6 35051932 35051932 C T ANKS1A Missense_Mutation p.S1010F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Y-06 6 39046148 39046148 G A GLP1R Missense_Mutation p.E292K 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Y-06 6 43098111 43098111 C T PTK7 Missense_Mutation p.A213V 0.33 tolerated(0.22) possibly_damaging(0.9) TCGA-DA-A95Y-06 6 5369232 5369232 C T FARS2 Silent p.N143N 0.67 TCGA-DA-A95Y-06 6 55924916 55924916 T C COL21A1 Missense_Mutation p.I836M 0.24 tolerated(0.22) benign(0.004) TCGA-DA-A95Y-06 6 57055137 57055137 G C RAB23 3'UTR 0.40 TCGA-DA-A95Y-06 6 74073455 74073455 G A KHDC3L Missense_Mutation p.E176K 0.78 deleterious(0) probably_damaging(0.929) TCGA-DA-A95Y-06 6 80629190 80629190 G A ELOVL4 Missense_Mutation p.P206S 0.63 deleterious(0) possibly_damaging(0.67) TCGA-DA-A95Y-06 6 90660904 90660904 G A BACH2 Silent p.V307V 0.81 TCGA-DA-A95Y-06 7 100459019 100459019 C T SLC12A9 Missense_Mutation p.T450I 0.58 deleterious(0) possibly_damaging(0.853) TCGA-DA-A95Y-06 7 106508811 106508811 G A PIK3CG Missense_Mutation p.D269N 0.22 tolerated(0.09) possibly_damaging(0.838) TCGA-DA-A95Y-06 7 126086323 126086323 G A GRM8 Missense_Mutation p.P845L 0.52 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Y-06 7 128490967 128490967 G A FLNC Missense_Mutation p.G1837R 0.56 tolerated(0.31) possibly_damaging(0.71) TCGA-DA-A95Y-06 7 128503066 128503066 C T ATP6V1F Silent p.F36F 0.26 TCGA-DA-A95Y-06 7 129066950 129066950 A G AHCYL2 3'UTR 0.28 TCGA-DA-A95Y-06 7 129395005 129395005 T G NRF1 Missense_Mutation p.V499G 0.61 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-DA-A95Y-06 7 137792272 137792272 G A AKR1D1 Silent p.G267G 0.57 TCGA-DA-A95Y-06 7 140477837 140477851 TAGGTGCTGTCACAT - BRAF In_Frame_Del p.N486_P490del 0.34 TCGA-DA-A95Y-06 7 142423623 142423623 C T TRBV27 Silent p.F93F 0.57 TCGA-DA-A95Y-06 7 18066938 18066938 C T PRPS1L1 Silent p.R156R 0.39 TCGA-DA-A95Y-06 7 21826264 21826264 C T DNAH11 Missense_Mutation p.A3214V 0.42 benign(0.018) TCGA-DA-A95Y-06 7 21826265 21826265 C T DNAH11 Silent p.A3214A 0.42 TCGA-DA-A95Y-06 7 32209422 32209422 C T PDE1C Missense_Mutation p.E95K 0.51 tolerated(0.11) benign(0.339) TCGA-DA-A95Y-06 7 47853609 47853609 C T PKD1L1 Missense_Mutation p.G2365R 0.46 tolerated(0.12) possibly_damaging(0.542) TCGA-DA-A95Y-06 7 5410907 5410907 G C TNRC18 Missense_Mutation p.D1106E 0.53 probably_damaging(0.998) TCGA-DA-A95Y-06 7 72907167 72907167 G A BAZ1B Missense_Mutation p.P219L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Y-06 7 73151277 73151277 C T ABHD11 Missense_Mutation p.G266E 0.25 tolerated(0.09) benign(0.098) TCGA-DA-A95Y-06 7 73279341 73279341 C T WBSCR28 Missense_Mutation p.H31Y 0.58 deleterious(0.03) possibly_damaging(0.607) TCGA-DA-A95Y-06 7 82785130 82785130 C T PCLO Missense_Mutation p.R276Q 0.61 unknown(0) TCGA-DA-A95Y-06 7 87020903 87020903 A T CROT Splice_Site p.X462_splice 0.29 TCGA-DA-A95Y-06 7 94540311 94540311 G A PPP1R9A Missense_Mutation p.E296K 0.32 deleterious(0.04) possibly_damaging(0.575) TCGA-DA-A95Y-06 7 99564890 99564890 G A AZGP1 Silent p.V211V 0.47 TCGA-DA-A95Y-06 7 99918529 99918529 G A SPDYE3 3'UTR 0.32 TCGA-DA-A95Y-06 8 110461680 110461680 T A PKHD1L1 Missense_Mutation p.Y2047N 0.52 tolerated(0.48) benign(0.079) TCGA-DA-A95Y-06 8 110535119 110535119 C T PKHD1L1 Silent p.D4110D 0.35 TCGA-DA-A95Y-06 8 113599442 113599442 C T CSMD3 Silent p.T1246T 0.53 TCGA-DA-A95Y-06 8 121502708 121502708 C T MTBP Missense_Mutation p.P449S 0.42 tolerated(0.29) probably_damaging(0.982) TCGA-DA-A95Y-06 8 124975620 124975620 C T FER1L6 Missense_Mutation p.S60L 0.32 tolerated(0.07) benign(0.002) TCGA-DA-A95Y-06 8 125487470 125487470 C T RNF139 Silent p.S40S 0.41 TCGA-DA-A95Y-06 8 125487471 125487471 T C RNF139 Missense_Mutation p.Y41H 0.41 tolerated(0.21) benign(0.016) TCGA-DA-A95Y-06 8 125551344 125551344 C T TATDN1 5'Flank 0.44 TCGA-DA-A95Y-06 8 125551345 125551345 C T TATDN1 5'Flank 0.44 TCGA-DA-A95Y-06 8 144332686 144332686 C T ZFP41 3'UTR 0.56 TCGA-DA-A95Y-06 8 145001629 145001629 G C PLEC Silent p.A1372A 0.24 TCGA-DA-A95Y-06 8 145739845 145739845 C T RECQL4 Missense_Mutation p.R562Q 0.17 deleterious(0.04) benign(0.118) TCGA-DA-A95Y-06 8 16026341 16026341 T C MSR1 Missense_Mutation p.S86G 0.72 tolerated(0.79) benign(0) TCGA-DA-A95Y-06 8 24188689 24188689 C T ADAM28 Missense_Mutation p.S377F 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 8 27462496 27462496 C T CLU Missense_Mutation p.M258I 0.80 tolerated(0.06) probably_damaging(0.912) TCGA-DA-A95Y-06 8 27516447 27516447 G C SCARA3 Missense_Mutation p.D254H 0.50 deleterious(0) probably_damaging(0.979) TCGA-DA-A95Y-06 8 3072090 3072090 G A CSMD1 Missense_Mutation p.P1599L 0.88 benign(0.187) TCGA-DA-A95Y-06 8 53084532 53084532 C T ST18 Missense_Mutation p.E297K 0.46 deleterious(0.05) benign(0.002) TCGA-DA-A95Y-06 8 61655204 61655204 C T CHD7 Missense_Mutation p.P405S 0.26 benign(0) TCGA-DA-A95Y-06 8 61769280 61769280 C T CHD7 Nonsense_Mutation p.Q2481* 0.48 TCGA-DA-A95Y-06 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.27 tolerated(0.51) benign(0.108) TCGA-DA-A95Y-06 8 68028245 68028245 C T CSPP1 Missense_Mutation p.P457S 0.58 tolerated(0.17) possibly_damaging(0.614) TCGA-DA-A95Y-06 8 70515839 70515839 C T SULF1 Nonsense_Mutation p.R399* 0.19 TCGA-DA-A95Y-06 8 77767319 77767319 G A ZFHX4 Missense_Mutation p.G2721E 0.45 probably_damaging(0.999) TCGA-DA-A95Y-06 8 8560229 8560229 C T CLDN23 Silent p.D107D 0.37 TCGA-DA-A95Y-06 8 88366005 88366005 G A CNBD1 Missense_Mutation p.D432N 0.42 tolerated(0.06) possibly_damaging(0.848) TCGA-DA-A95Y-06 8 95531318 95531319 - T KIAA1429 Frame_Shift_Ins p.T803Nfs*3 0.33 TCGA-DA-A95Y-06 9 107298391 107298391 G T OR13C3 Missense_Mutation p.A235D 0.11 deleterious(0) probably_damaging(0.974) TCGA-DA-A95Y-06 9 107298746 107298746 A T OR13C3 Missense_Mutation p.S117T 0.04 tolerated(0.57) benign(0.226) TCGA-DA-A95Y-06 9 112694250 112694250 C A PALM2-AKAP2 Silent p.I146I 0.89 TCGA-DA-A95Y-06 9 112694251 112694251 C T PALM2-AKAP2 Missense_Mutation p.L147F 0.91 tolerated(0.06) benign(0.367) TCGA-DA-A95Y-06 9 117803337 117803337 C T TNC Missense_Mutation p.G1759R 0.84 deleterious(0) probably_damaging(1) TCGA-DA-A95Y-06 9 118997475 118997475 C T PAPPA Missense_Mutation p.S764L 0.85 tolerated(0.84) benign(0.002) TCGA-DA-A95Y-06 9 125681269 125681269 T G ZBTB26 Silent p.R315R 0.83 TCGA-DA-A95Y-06 9 131909828 131909828 C T PPP2R4 3'UTR 0.73 TCGA-DA-A95Y-06 9 140357944 140357944 G A PNPLA7 Missense_Mutation p.S1089F 0.92 deleterious(0) probably_damaging(0.993) TCGA-DA-A95Y-06 9 86474188 86474188 C T KIF27 Silent p.E1011E 0.85 TCGA-DA-A95Y-06 X 105152799 105152799 C T NRK Missense_Mutation p.P390L 0.73 deleterious(0) benign(0.306) TCGA-DA-A95Y-06 X 106111707 106111707 G A TBC1D8B Splice_Site p.X938_splice 0.75 TCGA-DA-A95Y-06 X 111698654 111698654 C T ZCCHC16 Missense_Mutation p.P233L 0.79 deleterious(0.02) benign(0.139) TCGA-DA-A95Y-06 X 114141390 114141390 C T HTR2C Silent p.F263F 0.84 TCGA-DA-A95Y-06 X 122551702 122551702 C T GRIA3 Intron 0.79 TCGA-DA-A95Y-06 X 130409003 130409003 G A IGSF1 Missense_Mutation p.H1153Y 0.86 tolerated(0.1) possibly_damaging(0.478) TCGA-DA-A95Y-06 X 140996416 140996416 C T MAGEC1 Missense_Mutation p.H1076Y 0.89 tolerated(0.06) unknown(0) TCGA-DA-A95Y-06 X 146360842 146360842 G A MIR514A1 RNA 0.88 TCGA-DA-A95Y-06 X 148037456 148037456 G A AFF2 Silent p.G627G 0.84 TCGA-DA-A95Y-06 X 154156929 154156929 C T F8 Silent p.K1712K 0.80 TCGA-DA-A95Y-06 X 27766262 27766262 T G DCAF8L2 Missense_Mutation p.V417G 0.83 deleterious(0) possibly_damaging(0.773) TCGA-DA-A95Y-06 X 2867536 2867536 G A ARSE Silent p.P221P 0.90 TCGA-DA-A95Y-06 X 30712595 30712595 C T GK Nonsense_Mutation p.Q165* 0.85 TCGA-DA-A95Y-06 X 48126405 48126405 C A SSX1 3'UTR 0.92 TCGA-DA-A95Y-06 X 69890296 69890296 C T TEX11 Missense_Mutation p.M452I 0.87 tolerated(0.69) benign(0.005) TCGA-DA-A95Y-06 Y 16835045 16835045 G A NLGN4Y Missense_Mutation p.G174E 0.83 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 101515430 101515430 C T CUTC Silent p.S252S 0.28 TCGA-DA-A95Z-06 10 101715522 101715522 G A DNMBP Missense_Mutation p.P570L 0.48 tolerated_low_confidence(0.28) benign(0.002) TCGA-DA-A95Z-06 10 102049786 102049786 G A PKD2L1 Missense_Mutation p.P746S 0.29 tolerated_low_confidence(0.19) benign(0.004) TCGA-DA-A95Z-06 10 103751746 103751746 G A C10orf76 Missense_Mutation p.P442L 0.44 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 10 103908647 103908647 C T PPRC1 Missense_Mutation p.S1564F 0.32 deleterious(0) possibly_damaging(0.788) TCGA-DA-A95Z-06 10 104352481 104352481 G A SUFU Silent p.Q199Q 0.47 TCGA-DA-A95Z-06 10 105133351 105133351 A G TAF5 Missense_Mutation p.K266E 0.43 deleterious(0.04) benign(0.19) TCGA-DA-A95Z-06 10 105182885 105182885 C T PDCD11 Missense_Mutation p.H880Y 0.31 deleterious(0) probably_damaging(0.987) TCGA-DA-A95Z-06 10 105193766 105193766 C T PDCD11 Missense_Mutation p.P1179L 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-DA-A95Z-06 10 105218511 105218511 C T CALHM1 5'UTR 0.31 TCGA-DA-A95Z-06 10 105349284 105349284 G A NEURL1 Silent p.L451L 0.43 TCGA-DA-A95Z-06 10 105798285 105798285 C T COL17A1 Silent p.G983G 0.41 TCGA-DA-A95Z-06 10 105836090 105836090 C T COL17A1 Silent p.R100R 0.46 TCGA-DA-A95Z-06 10 105953688 105953688 C T WDR96 Missense_Mutation p.D460N 0.38 tolerated(0.46) benign(0.001) TCGA-DA-A95Z-06 10 105974036 105974036 C T WDR96 Missense_Mutation p.E189K 0.39 tolerated(0.1) benign(0.003) TCGA-DA-A95Z-06 10 106130692 106130692 G A CCDC147 Missense_Mutation p.G324R 0.36 tolerated(0.16) benign(0.096) TCGA-DA-A95Z-06 10 106214254 106214254 G A CCDC147 Missense_Mutation p.G862E 0.38 deleterious(0) probably_damaging(0.988) TCGA-DA-A95Z-06 10 106918660 106918660 C T SORCS3 Missense_Mutation p.S547F 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-DA-A95Z-06 10 107005349 107005349 G A SORCS3 Missense_Mutation p.G973E 0.33 deleterious(0.01) possibly_damaging(0.831) TCGA-DA-A95Z-06 10 107005408 107005408 G A SORCS3 Missense_Mutation p.E993K 0.32 tolerated(0.26) benign(0.01) TCGA-DA-A95Z-06 10 114173060 114173060 G A ACSL5 Missense_Mutation p.D416N 0.36 deleterious(0.01) possibly_damaging(0.534) TCGA-DA-A95Z-06 10 115348656 115348656 G A NRAP 3'UTR 0.37 TCGA-DA-A95Z-06 10 115402714 115402714 C T NRAP Silent p.K398K 0.27 TCGA-DA-A95Z-06 10 115982354 115982354 G A TDRD1 Missense_Mutation p.E967K 0.45 tolerated(0.18) probably_damaging(0.953) TCGA-DA-A95Z-06 10 115991253 115991253 T G TDRD1 Missense_Mutation p.S1183A 0.46 tolerated_low_confidence(1) benign(0.198) TCGA-DA-A95Z-06 10 116931038 116931038 G A ATRNL1 Missense_Mutation p.E446K 0.35 deleterious(0.02) possibly_damaging(0.556) TCGA-DA-A95Z-06 10 118357442 118357442 C T PNLIPRP1 Missense_Mutation p.P226L 0.39 deleterious(0.01) possibly_damaging(0.763) TCGA-DA-A95Z-06 10 118386466 118386466 G C PNLIPRP2 Missense_Mutation p.R141P 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 120816325 120816325 G A EIF3A Missense_Mutation p.P708L 0.40 deleterious(0) unknown(0) TCGA-DA-A95Z-06 10 120879851 120879851 A C FAM45A Splice_Site p.X161_splice 0.50 TCGA-DA-A95Z-06 10 123846559 123846559 G A TACC2 Missense_Mutation p.G1515E 0.36 benign(0.021) TCGA-DA-A95Z-06 10 124339255 124339255 A C DMBT1 Missense_Mutation p.M281L 0.43 tolerated(0.91) benign(0.05) TCGA-DA-A95Z-06 10 124361612 124361612 G A DMBT1 Missense_Mutation p.E1215K 0.39 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 10 124457719 124457719 G A C10orf120 Missense_Mutation p.H180Y 0.32 deleterious(0.02) benign(0.182) TCGA-DA-A95Z-06 10 125557517 125557517 C T CPXM2 Missense_Mutation p.M288I 0.36 deleterious(0.03) benign(0.003) TCGA-DA-A95Z-06 10 125771895 125771895 G A CHST15 Silent p.S483S 0.41 TCGA-DA-A95Z-06 10 127727983 127727983 G A ADAM12 Missense_Mutation p.T710I 0.29 tolerated(0.29) benign(0.03) TCGA-DA-A95Z-06 10 12870837 12870837 G A CAMK1D Missense_Mutation p.R370Q 0.27 tolerated_low_confidence(0.16) benign(0.143) TCGA-DA-A95Z-06 10 129881131 129881131 T - PTPRE Frame_Shift_Del p.F689Lfs*39 0.29 TCGA-DA-A95Z-06 10 13361306 13361306 C T SEPHS1 Missense_Mutation p.E339K 0.25 deleterious(0.01) benign(0.354) TCGA-DA-A95Z-06 10 133769265 133769265 C T PPP2R2D Missense_Mutation p.A356V 0.23 deleterious(0.03) probably_damaging(0.91) TCGA-DA-A95Z-06 10 133769266 133769266 C T PPP2R2D Silent p.A356A 0.22 TCGA-DA-A95Z-06 10 133958632 133958632 G A JAKMIP3 Missense_Mutation p.E542K 0.50 deleterious(0) possibly_damaging(0.59) TCGA-DA-A95Z-06 10 134151129 134151129 C T LRRC27 Missense_Mutation p.P91S 0.45 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Z-06 10 134884493 134884493 C T GPR123 Missense_Mutation p.H21Y 0.36 deleterious_low_confidence(0) benign(0.291) TCGA-DA-A95Z-06 10 15255388 15255388 G A FAM171A1 Silent p.N733N 0.54 TCGA-DA-A95Z-06 10 15262985 15262985 G A FAM171A1 Nonsense_Mutation p.Q277* 0.62 TCGA-DA-A95Z-06 10 15688944 15688944 G A ITGA8 Missense_Mutation p.L370F 0.24 tolerated(0.71) benign(0.001) TCGA-DA-A95Z-06 10 15714660 15714660 C T ITGA8 Silent p.T255T 0.56 TCGA-DA-A95Z-06 10 15821070 15821070 G A FAM188A Missense_Mutation p.P420L 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 16962114 16962114 G A CUBN Silent p.I2223I 0.65 TCGA-DA-A95Z-06 10 20290786 20290786 G A PLXDC2 Nonsense_Mutation p.W65* 0.60 TCGA-DA-A95Z-06 10 20500656 20500656 G A PLXDC2 Missense_Mutation p.E374K 0.16 deleterious(0.03) possibly_damaging(0.637) TCGA-DA-A95Z-06 10 21148698 21148698 G A NEBL Missense_Mutation p.P248S 0.20 tolerated(0.22) probably_damaging(0.998) TCGA-DA-A95Z-06 10 21185902 21185902 C T NEBL Silent p.T46T 0.21 TCGA-DA-A95Z-06 10 23482881 23482881 T C PTF1A 3'UTR 0.65 TCGA-DA-A95Z-06 10 24884090 24884090 G A ARHGAP21 Missense_Mutation p.R1248C 0.25 deleterious(0) probably_damaging(0.968) TCGA-DA-A95Z-06 10 25883161 25883161 C G GPR158 Intron 0.25 TCGA-DA-A95Z-06 10 25886809 25886809 C T GPR158 Missense_Mutation p.R752C 0.54 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 10 28223955 28223955 C T ARMC4 Missense_Mutation p.E827K 0.53 deleterious(0.01) probably_damaging(0.911) TCGA-DA-A95Z-06 10 28224177 28224177 G A ARMC4 Missense_Mutation p.R753W 0.46 deleterious(0) probably_damaging(0.953) TCGA-DA-A95Z-06 10 30318011 30318011 G T KIAA1462 Missense_Mutation p.P356T 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-DA-A95Z-06 10 30318012 30318012 G T KIAA1462 Missense_Mutation p.N355K 0.27 deleterious(0.01) probably_damaging(0.943) TCGA-DA-A95Z-06 10 30318498 30318498 C T KIAA1462 Silent p.R193R 0.25 TCGA-DA-A95Z-06 10 3197812 3197812 G A PITRM1 Missense_Mutation p.P531L 0.57 tolerated(0.19) benign(0.005) TCGA-DA-A95Z-06 10 3197813 3197813 G A PITRM1 Missense_Mutation p.P531S 0.56 tolerated(0.4) benign(0.016) TCGA-DA-A95Z-06 10 34420456 34420456 G A PARD3 Nonsense_Mutation p.Q1162* 0.31 TCGA-DA-A95Z-06 10 34626226 34626226 T G PARD3 Missense_Mutation p.K849T 0.53 tolerated(0.19) possibly_damaging(0.849) TCGA-DA-A95Z-06 10 42965584 42965584 G A CCNYL2 RNA 0.71 TCGA-DA-A95Z-06 10 43623723 43623723 C T RET 3'UTR 0.12 TCGA-DA-A95Z-06 10 43691961 43691961 C T RASGEF1A Missense_Mutation p.E462K 0.56 deleterious(0) possibly_damaging(0.705) TCGA-DA-A95Z-06 10 44053425 44053425 C T ZNF239 Missense_Mutation p.E35K 0.52 tolerated(0.92) benign(0.001) TCGA-DA-A95Z-06 10 44053427 44053427 C T ZNF239 Missense_Mutation p.G34E 0.50 tolerated(0.24) benign(0.29) TCGA-DA-A95Z-06 10 46999412 46999412 C T GPRIN2 Missense_Mutation p.P178S 0.31 tolerated(0.29) benign(0.01) TCGA-DA-A95Z-06 10 47087841 47087841 C T NPY4R Missense_Mutation p.P353L 0.16 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 10 49482692 49482692 C T FRMPD2 5'UTR 0.25 TCGA-DA-A95Z-06 10 49687744 49687744 G A ARHGAP22 Missense_Mutation p.S129F 0.40 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Z-06 10 50121768 50121768 C T LRRC18 Missense_Mutation p.E145K 0.26 tolerated(0.06) benign(0.065) TCGA-DA-A95Z-06 10 50272759 50272759 G A VSTM4 Silent p.C219C 0.48 TCGA-DA-A95Z-06 10 50285331 50285331 G A VSTM4 Silent p.I189I 0.19 TCGA-DA-A95Z-06 10 50315758 50315758 G A VSTM4 Missense_Mutation p.S113F 0.28 tolerated(0.41) benign(0.406) TCGA-DA-A95Z-06 10 50531940 50531940 C T C10orf71 Silent p.I450I 0.18 TCGA-DA-A95Z-06 10 50678738 50678738 G A ERCC6 Missense_Mutation p.P1090S 0.34 tolerated(0.51) benign(0.002) TCGA-DA-A95Z-06 10 50944221 50944221 G A OGDHL Silent p.I919I 0.54 TCGA-DA-A95Z-06 10 50952118 50952118 C T OGDHL Missense_Mutation p.G595R 0.50 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Z-06 10 51770067 51770067 C T AGAP6 3'UTR 0.32 TCGA-DA-A95Z-06 10 55568931 55568931 C T PCDH15 Missense_Mutation p.E561K 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A95Z-06 10 6067799 6067799 G A IL2RA Missense_Mutation p.S85F 0.18 deleterious(0.01) benign(0.367) TCGA-DA-A95Z-06 10 61829478 61829478 G A ANK3 Missense_Mutation p.P3721S 0.30 probably_damaging(0.992) TCGA-DA-A95Z-06 10 61830684 61830684 C T ANK3 Missense_Mutation p.D3319N 0.23 probably_damaging(0.978) TCGA-DA-A95Z-06 10 61833636 61833636 C T ANK3 Missense_Mutation p.E2335K 0.55 probably_damaging(0.959) TCGA-DA-A95Z-06 10 61946553 61946553 G A ANK3 Missense_Mutation p.H669Y 0.40 probably_damaging(0.999) TCGA-DA-A95Z-06 10 64573332 64573332 C T EGR2 Missense_Mutation p.E356K 0.24 deleterious(0) possibly_damaging(0.548) TCGA-DA-A95Z-06 10 70404962 70404962 C T TET1 Nonsense_Mutation p.Q826* 0.33 TCGA-DA-A95Z-06 10 70482243 70482243 T C CCAR1 5'UTR 0.25 TCGA-DA-A95Z-06 10 70646110 70646110 G A STOX1 Missense_Mutation p.R853K 0.26 deleterious(0.03) benign(0.055) TCGA-DA-A95Z-06 10 71026365 71026365 G T HKDC1 Splice_Site p.X869_splice 0.52 TCGA-DA-A95Z-06 10 72534960 72534960 A G TBATA Missense_Mutation p.Y253H 0.30 tolerated(0.24) benign(0.099) TCGA-DA-A95Z-06 10 73121975 73121975 C T SLC29A3 Silent p.F346F 0.54 TCGA-DA-A95Z-06 10 73405687 73405687 C T CDH23 Missense_Mutation p.R6W 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 73453969 73453969 G C CDH23 Missense_Mutation p.A340P 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 73558894 73558894 G A CDH23 Missense_Mutation p.D121N 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-DA-A95Z-06 10 75525561 75525561 C A SEC24C Missense_Mutation p.P457H 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A95Z-06 10 75557013 75557013 T A ZSWIM8 Silent p.P1139P 0.62 TCGA-DA-A95Z-06 10 7771917 7771917 G A ITIH2 Missense_Mutation p.E428K 0.50 deleterious(0.04) possibly_damaging(0.899) TCGA-DA-A95Z-06 10 8006108 8006108 C T TAF3 Missense_Mutation p.A212V 0.31 deleterious(0) benign(0.44) TCGA-DA-A95Z-06 10 81317053 81317053 C T SFTPA2 Missense_Mutation p.G220E 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Z-06 10 81702560 81702560 G A SFTPD Missense_Mutation p.S92F 0.41 deleterious(0.03) probably_damaging(0.951) TCGA-DA-A95Z-06 10 82036311 82036311 G A MAT1A Missense_Mutation p.P197S 0.28 deleterious(0.02) probably_damaging(0.973) TCGA-DA-A95Z-06 10 82182252 82182252 C T FAM213A Silent p.F86F 0.31 TCGA-DA-A95Z-06 10 84745122 84745122 G A NRG3 Missense_Mutation p.D618N 0.35 tolerated_low_confidence(0.76) benign(0.003) TCGA-DA-A95Z-06 10 87487752 87487752 C T GRID1 Missense_Mutation p.G465R 0.30 deleterious(0) probably_damaging(0.94) TCGA-DA-A95Z-06 10 88769307 88769307 C T RP11-96C23.10 3'Flank 0.40 TCGA-DA-A95Z-06 10 90351192 90351192 G A LIPJ Missense_Mutation p.D23N 0.44 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 10 91143854 91143854 C T IFIT1B Nonsense_Mutation p.R262* 0.32 TCGA-DA-A95Z-06 10 91479377 91479377 C T KIF20B Nonsense_Mutation p.Q546* 0.37 TCGA-DA-A95Z-06 10 92508910 92508910 G A HTR7 Silent p.T327T 0.33 TCGA-DA-A95Z-06 10 95556983 95556983 G A LGI1 Missense_Mutation p.G366E 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 10 95790865 95790865 C T PLCE1 Missense_Mutation p.S21F 0.43 tolerated_low_confidence(0.08) benign(0.004) TCGA-DA-A95Z-06 10 96014729 96014729 C T PLCE1 Silent p.N1159N 0.44 TCGA-DA-A95Z-06 10 96447630 96447630 G A CYP2C18 Missense_Mutation p.G91E 0.39 deleterious(0.01) possibly_damaging(0.828) TCGA-DA-A95Z-06 10 96447659 96447659 C T CYP2C18 Missense_Mutation p.P101S 0.38 deleterious(0.04) possibly_damaging(0.741) TCGA-DA-A95Z-06 10 96484110 96484110 C T CYP2C18 Silent p.V323V 0.36 TCGA-DA-A95Z-06 10 96493051 96493051 C T CYP2C18 Intron 0.44 TCGA-DA-A95Z-06 10 96535211 96535211 G A CYP2C19 Silent p.R132R 0.37 TCGA-DA-A95Z-06 10 98362125 98362125 G A PIK3AP1 Missense_Mutation p.R758C 0.48 tolerated(0.2) benign(0.034) TCGA-DA-A95Z-06 10 98744774 98744774 G T C10orf12 Missense_Mutation p.K1209N 0.45 deleterious(0.02) benign(0.258) TCGA-DA-A95Z-06 10 98763918 98763918 C T SLIT1 Missense_Mutation p.V1258M 0.38 deleterious(0.03) probably_damaging(1) TCGA-DA-A95Z-06 10 99969078 99969078 G A R3HCC1L Missense_Mutation p.D403N 0.46 tolerated(0.09) possibly_damaging(0.804) TCGA-DA-A95Z-06 11 101375390 101375390 C T TRPC6 Missense_Mutation p.D104N 0.76 deleterious(0) possibly_damaging(0.869) TCGA-DA-A95Z-06 11 101953841 101953841 G T C11orf70 Nonsense_Mutation p.E239* 0.78 TCGA-DA-A95Z-06 11 102743641 102743641 C T MMP12 RNA 0.82 TCGA-DA-A95Z-06 11 104897079 104897079 C T CASP1 Missense_Mutation p.R374Q 0.86 tolerated(1) benign(0.258) TCGA-DA-A95Z-06 11 10555624 10555624 G A RNF141 Nonsense_Mutation p.R28* 0.34 TCGA-DA-A95Z-06 11 10622592 10622592 C T MRVI1 Silent p.S630S 0.50 TCGA-DA-A95Z-06 11 106681064 106681064 G A GUCY1A2 Silent p.T449T 0.75 TCGA-DA-A95Z-06 11 1099234 1099234 G A MUC2 Missense_Mutation p.E2405K 0.22 unknown(0) TCGA-DA-A95Z-06 11 114182989 114182989 C T NNMT Silent p.I195I 0.89 TCGA-DA-A95Z-06 11 118769276 118769276 G A BCL9L Missense_Mutation p.P1450S 0.60 benign(0.09) TCGA-DA-A95Z-06 11 118773103 118773103 G A BCL9L Missense_Mutation p.P450L 0.82 benign(0.006) TCGA-DA-A95Z-06 11 119053996 119053996 C T NLRX1 Missense_Mutation p.R926W 0.77 deleterious(0.05) benign(0.002) TCGA-DA-A95Z-06 11 119206625 119206625 C T RNF26 Missense_Mutation p.P265S 0.80 deleterious(0) benign(0.268) TCGA-DA-A95Z-06 11 120008578 120008578 C T TRIM29 Silent p.K54K 0.88 TCGA-DA-A95Z-06 11 120355833 120355833 C T ARHGEF12 3'UTR 0.68 TCGA-DA-A95Z-06 11 1221101 1221101 C T MUC5AC RNA 0.79 TCGA-DA-A95Z-06 11 122665458 122665458 G T UBASH3B Silent p.G343G 0.72 TCGA-DA-A95Z-06 11 122665459 122665459 G T UBASH3B Missense_Mutation p.D344Y 0.73 deleterious(0) possibly_damaging(0.646) TCGA-DA-A95Z-06 11 123755336 123755336 C T TMEM225 Silent p.L63L 0.82 TCGA-DA-A95Z-06 11 123847523 123847523 G A OR10S1 Silent p.I292I 0.77 TCGA-DA-A95Z-06 11 124007894 124007894 C T VWA5A Nonsense_Mutation p.Q600* 0.68 TCGA-DA-A95Z-06 11 124135259 124135259 G A OR8G5 Silent p.L179L 0.85 TCGA-DA-A95Z-06 11 124252439 124252439 C T OR8B2 Missense_Mutation p.M267I 0.73 deleterious_low_confidence(0.04) benign(0.004) TCGA-DA-A95Z-06 11 124740101 124740101 C T ROBO3 Silent p.V269V 0.71 TCGA-DA-A95Z-06 11 125647892 125647892 C T PATE2 Missense_Mutation p.E28K 0.81 tolerated_low_confidence(0.89) benign(0.025) TCGA-DA-A95Z-06 11 130785029 130785029 G A SNX19 Missense_Mutation p.S269F 0.81 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Z-06 11 134079325 134079325 G A NCAPD3 Missense_Mutation p.S205F 0.82 deleterious(0) probably_damaging(0.989) TCGA-DA-A95Z-06 11 1605917 1605917 C T KRTAP5-1 Missense_Mutation p.G188D 0.18 tolerated_low_confidence(0.18) unknown(0) TCGA-DA-A95Z-06 11 17409275 17409275 G A KCNJ11 Missense_Mutation p.L122F 0.46 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 11 17527468 17527468 C T USH1C Missense_Mutation p.R681Q 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DA-A95Z-06 11 18472549 18472549 C T LDHC Missense_Mutation p.P292S 0.27 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 11 18735936 18735936 C T IGSF22 Silent p.V562V 0.28 TCGA-DA-A95Z-06 11 1905234 1905234 C T LSP1 Missense_Mutation p.P319S 0.27 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DA-A95Z-06 11 194466 194466 G A SCGB1C1 3'UTR 0.11 TCGA-DA-A95Z-06 11 20177860 20177860 G A DBX1 Missense_Mutation p.P350L 0.59 tolerated_low_confidence(0.05) benign(0) TCGA-DA-A95Z-06 11 26620420 26620420 C T ANO3 Nonsense_Mutation p.Q516* 0.49 TCGA-DA-A95Z-06 11 26656615 26656615 G A ANO3 Missense_Mutation p.E681K 0.25 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 11 26718800 26718800 C A SLC5A12 Splice_Site p.X318_splice 0.29 TCGA-DA-A95Z-06 11 26720049 26720049 G A SLC5A12 Silent p.I285I 0.28 TCGA-DA-A95Z-06 11 3038409 3038409 C T CARS Missense_Mutation p.R615Q 0.32 tolerated(0.13) benign(0.03) TCGA-DA-A95Z-06 11 30938574 30938574 C T DCDC1 Missense_Mutation p.D1099N 0.58 tolerated(0.31) possibly_damaging(0.728) TCGA-DA-A95Z-06 11 31086054 31086054 C T DCDC1 Silent p.R851R 0.26 TCGA-DA-A95Z-06 11 33564860 33564860 T A KIAA1549L Missense_Mutation p.F287Y 0.55 tolerated_low_confidence(0.07) benign(0.035) TCGA-DA-A95Z-06 11 33565027 33565027 C T KIAA1549L Missense_Mutation p.P343S 0.35 tolerated_low_confidence(0.1) benign(0.011) TCGA-DA-A95Z-06 11 35747478 35747478 C T TRIM44 Missense_Mutation p.R252W 0.56 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 11 36595377 36595377 T C RAG1 Missense_Mutation p.F175L 0.31 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-DA-A95Z-06 11 36614356 36614356 G A RAG2 Missense_Mutation p.H455Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 11 3688991 3688991 G C CHRNA10 Silent p.A122A 0.80 TCGA-DA-A95Z-06 11 3793152 3793152 G A NUP98 Missense_Mutation p.R204C 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 11 43413095 43413095 C T TTC17 Missense_Mutation p.P167L 0.49 deleterious(0) probably_damaging(0.96) TCGA-DA-A95Z-06 11 43413384 43413384 G A TTC17 Missense_Mutation p.R182K 0.28 deleterious(0.05) benign(0.39) TCGA-DA-A95Z-06 11 4388949 4388949 C T OR52B4 Missense_Mutation p.D193N 0.19 tolerated(0.09) benign(0.248) TCGA-DA-A95Z-06 11 45672171 45672171 G A CHST1 Silent p.I101I 0.32 TCGA-DA-A95Z-06 11 45924130 45924130 C T MAPK8IP1 Missense_Mutation p.A271V 0.64 deleterious(0.03) benign(0.122) TCGA-DA-A95Z-06 11 46564037 46564037 A - AMBRA1 Frame_Shift_Del p.Y420* 0.14 TCGA-DA-A95Z-06 11 46564444 46564444 G A AMBRA1 Nonsense_Mutation p.Q285* 0.52 TCGA-DA-A95Z-06 11 46747649 46747649 G A F2 Missense_Mutation p.G267E 0.24 tolerated(0.06) benign(0.236) TCGA-DA-A95Z-06 11 47367848 47367848 C T MYBPC3 Missense_Mutation p.E334K 0.12 deleterious(0.03) benign(0.235) TCGA-DA-A95Z-06 11 47436351 47436351 C T SLC39A13 Silent p.L270L 0.51 TCGA-DA-A95Z-06 11 48266817 48266817 C T OR4X2 Silent p.F54F 0.25 TCGA-DA-A95Z-06 11 48266818 48266818 C T OR4X2 Missense_Mutation p.L55F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.14 TCGA-DA-A95Z-06 11 4929077 4929077 C T OR51A7 Missense_Mutation p.P160S 0.28 deleterious(0.02) possibly_damaging(0.777) TCGA-DA-A95Z-06 11 4936237 4936237 G A OR51G2 Silent p.I219I 0.29 TCGA-DA-A95Z-06 11 4936551 4936551 G A OR51G2 Missense_Mutation p.L115F 0.25 tolerated(0.2) probably_damaging(0.924) TCGA-DA-A95Z-06 11 4936771 4936771 C T OR51G2 Silent p.L41L 0.18 TCGA-DA-A95Z-06 11 49597781 49597781 G A RP11-707M1.1 RNA 0.57 TCGA-DA-A95Z-06 11 4967808 4967808 G A OR51A4 Nonsense_Mutation p.Q175* 0.45 TCGA-DA-A95Z-06 11 49974304 49974304 C T OR4C13 Silent p.V110V 0.28 TCGA-DA-A95Z-06 11 5221867 5221867 G A OR51V1 Missense_Mutation p.L22F 0.50 tolerated(0.22) possibly_damaging(0.587) TCGA-DA-A95Z-06 11 5247939 5247939 C T HBB Silent p.V61V 0.57 TCGA-DA-A95Z-06 11 5344844 5344844 A G OR51B2 Silent p.S228S 0.52 TCGA-DA-A95Z-06 11 5364437 5364437 G A OR51B5 Silent p.S106S 0.46 TCGA-DA-A95Z-06 11 5373243 5373243 C T OR51B6 Missense_Mutation p.S169F 0.22 deleterious(0.01) possibly_damaging(0.89) TCGA-DA-A95Z-06 11 5462531 5462531 C T OR51I1 Missense_Mutation p.D72N 0.65 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 11 55038139 55038139 G A TRIM48 3'UTR 0.16 TCGA-DA-A95Z-06 11 5509993 5509993 G A OR52D1 Silent p.G19G 0.61 TCGA-DA-A95Z-06 11 55135951 55135951 G A OR4A15 Missense_Mutation p.G198R 0.57 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A95Z-06 11 5529407 5529407 G T UBQLN3 Missense_Mutation p.S461Y 0.26 deleterious(0.05) benign(0.169) TCGA-DA-A95Z-06 11 55339909 55339909 C A OR4C16 Silent p.S102S 0.29 TCGA-DA-A95Z-06 11 5537102 5537102 G A UBQLNL Silent p.F190F 0.32 TCGA-DA-A95Z-06 11 55405880 55405880 C T OR4P4 Missense_Mutation p.S16F 0.58 tolerated(0.12) benign(0.027) TCGA-DA-A95Z-06 11 55433035 55433035 G A OR4C6 Silent p.T131T 0.54 TCGA-DA-A95Z-06 11 55433545 55433545 G A OR4C6 Missense_Mutation p.M301I 0.44 tolerated(0.41) benign(0.003) TCGA-DA-A95Z-06 11 55587185 55587185 C T OR5D18 Missense_Mutation p.P27L 0.26 tolerated(0.13) benign(0.008) TCGA-DA-A95Z-06 11 55681414 55681414 G A OR5W2 Silent p.F215F 0.25 TCGA-DA-A95Z-06 11 55735272 55735272 C T OR10AG1 Missense_Mutation p.R223K 0.32 tolerated(0.38) benign(0.007) TCGA-DA-A95Z-06 11 55999829 55999829 G A OR5T2 Missense_Mutation p.S278F 0.27 deleterious(0) possibly_damaging(0.739) TCGA-DA-A95Z-06 11 5655040 5655040 C T TRIM34 Missense_Mutation p.L144F 0.38 tolerated(0.18) probably_damaging(0.972) TCGA-DA-A95Z-06 11 57137425 57137425 G A P2RX3 Silent p.A383A 0.45 TCGA-DA-A95Z-06 11 57367477 57367477 C T SERPING1 Silent p.I59I 0.40 TCGA-DA-A95Z-06 11 5757736 5757736 C T OR56B1 5'UTR 0.24 TCGA-DA-A95Z-06 11 5809912 5809912 G A OR52N1 Silent p.F45F 0.63 TCGA-DA-A95Z-06 11 5809918 5809918 C T OR52N1 Silent p.G43G 0.27 TCGA-DA-A95Z-06 11 58477424 58477424 C T GLYAT Missense_Mutation p.E236K 0.49 tolerated(0.46) benign(0.252) TCGA-DA-A95Z-06 11 58604772 58604772 G A GLYATL2 Silent p.I95I 0.27 TCGA-DA-A95Z-06 11 5862454 5862454 G A OR52E6 Missense_Mutation p.A225V 0.34 deleterious(0.04) benign(0.107) TCGA-DA-A95Z-06 11 5905828 5905828 G A OR52E4 Silent p.Q102Q 0.32 TCGA-DA-A95Z-06 11 59630064 59630064 C T TCN1 Missense_Mutation p.E131K 0.50 tolerated(0.64) benign(0.023) TCGA-DA-A95Z-06 11 59631560 59631560 C T TCN1 Splice_Site p.X27_splice 0.54 TCGA-DA-A95Z-06 11 60707046 60707046 C T SLC15A3 Silent p.G447G 0.34 TCGA-DA-A95Z-06 11 61018696 61018696 G A PGA5 Silent p.Q370Q 0.30 TCGA-DA-A95Z-06 11 61560071 61560071 G A TMEM258 5'UTR 0.23 TCGA-DA-A95Z-06 11 6220819 6220819 C T OR52W1 Silent p.A122A 0.58 TCGA-DA-A95Z-06 11 6244966 6244966 G A FAM160A2 Silent p.V217V 0.19 TCGA-DA-A95Z-06 11 62520738 62520738 C T ZBTB3 Silent p.E183E 0.23 TCGA-DA-A95Z-06 11 62554801 62554801 C T TAF6L 3'UTR 0.33 TCGA-DA-A95Z-06 11 62910927 62910927 T C SLC22A24 Missense_Mutation p.N109D 0.23 deleterious(0) benign(0.229) TCGA-DA-A95Z-06 11 63078567 63078567 G A SLC22A10 3'UTR 0.67 TCGA-DA-A95Z-06 11 63149636 63149636 G A SLC22A9 Silent p.L320L 0.58 TCGA-DA-A95Z-06 11 63326039 63326039 C T HRASLS2 Missense_Mutation p.G71E 0.32 tolerated(0.51) benign(0.142) TCGA-DA-A95Z-06 11 63486207 63486207 C T RTN3 Missense_Mutation p.S78F 0.27 deleterious_low_confidence(0) benign(0.069) TCGA-DA-A95Z-06 11 64055929 64055929 C T GPR137 Missense_Mutation p.P359S 0.30 tolerated(0.3) benign(0.343) TCGA-DA-A95Z-06 11 64525806 64525806 G A PYGM Missense_Mutation p.S147F 0.48 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Z-06 11 64825682 64825682 C T NAALADL1 Missense_Mutation p.D76N 0.36 tolerated(0.27) possibly_damaging(0.593) TCGA-DA-A95Z-06 11 6502591 6502591 G A ARFIP2 5'Flank 0.29 TCGA-DA-A95Z-06 11 65365937 65365937 G A MAP3K11 Missense_Mutation p.P790L 0.58 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-DA-A95Z-06 11 65983993 65983993 C T PACS1 Missense_Mutation p.R270C 0.29 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 11 66384488 66384488 C T RBM14-RBM4 Silent p.F99F 0.45 TCGA-DA-A95Z-06 11 67234707 67234707 G A TMEM134 Intron 0.61 TCGA-DA-A95Z-06 11 68157438 68157438 C T LRP5 Missense_Mutation p.S501F 0.66 deleterious(0.01) possibly_damaging(0.862) TCGA-DA-A95Z-06 11 6913074 6913074 G A OR2D2 Missense_Mutation p.R220C 0.24 tolerated(0.2) benign(0.005) TCGA-DA-A95Z-06 11 69962597 69962597 G A ANO1 Missense_Mutation p.D297N 0.92 deleterious(0) probably_damaging(0.97) TCGA-DA-A95Z-06 11 70333601 70333602 AC T SHANK2 Frame_Shift_Del p.S934Pfs*12 0.38 TCGA-DA-A95Z-06 11 72421520 72421520 G A ARAP1 Silent p.D442D 0.22 TCGA-DA-A95Z-06 11 74883540 74883540 G A SLCO2B1 Missense_Mutation p.E300K 0.44 tolerated(0.1) benign(0.133) TCGA-DA-A95Z-06 11 76253317 76253317 A G C11orf30 Missense_Mutation p.H872R 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.84) TCGA-DA-A95Z-06 11 76371413 76371413 A G LRRC32 Silent p.N408N 0.56 TCGA-DA-A95Z-06 11 78383338 78383338 G A TENM4 Missense_Mutation p.R1845C 0.56 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 11 78437190 78437190 C T TENM4 Missense_Mutation p.E1162K 0.26 deleterious(0) possibly_damaging(0.65) TCGA-DA-A95Z-06 11 803219 803219 G A PIDD Missense_Mutation p.L222F 0.69 deleterious(0.05) probably_damaging(1) TCGA-DA-A95Z-06 11 811685 811685 C T RPLP2 Intron 0.55 TCGA-DA-A95Z-06 11 8122126 8122126 G A TUB Missense_Mutation p.R453K 0.29 deleterious(0) probably_damaging(0.991) TCGA-DA-A95Z-06 11 85445240 85445240 A T SYTL2 Missense_Mutation p.F377I 0.48 tolerated(0.06) benign(0.027) TCGA-DA-A95Z-06 11 86662549 86662549 G A FZD4 Missense_Mutation p.R417W 0.47 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 11 88033707 88033707 G A CTSC Nonsense_Mutation p.R250* 0.42 TCGA-DA-A95Z-06 11 92086444 92086444 C T FAT3 Missense_Mutation p.S389F 0.86 probably_damaging(0.943) TCGA-DA-A95Z-06 11 92086984 92086984 G A FAT3 Missense_Mutation p.G569E 0.83 benign(0.023) TCGA-DA-A95Z-06 11 92616304 92616304 C T FAT3 Missense_Mutation p.P4228S 0.78 probably_damaging(0.999) TCGA-DA-A95Z-06 12 101295615 101295615 C T ANO4 Missense_Mutation p.P18S 0.52 tolerated_low_confidence(0.17) benign(0.001) TCGA-DA-A95Z-06 12 101490408 101490408 C T ANO4 Silent p.I576I 0.66 TCGA-DA-A95Z-06 12 101876598 101876598 G A SPIC Missense_Mutation p.G80E 0.23 tolerated(1) benign(0.037) TCGA-DA-A95Z-06 12 104033936 104033936 C T STAB2 Silent p.F314F 0.14 TCGA-DA-A95Z-06 12 104086644 104086644 G A STAB2 Missense_Mutation p.G1118R 0.34 deleterious(0) probably_damaging(0.981) TCGA-DA-A95Z-06 12 107391695 107391695 G A CRY1 Silent p.I429I 0.74 TCGA-DA-A95Z-06 12 107486713 107486713 G A CRY1 Silent p.F9F 0.61 TCGA-DA-A95Z-06 12 108686219 108686219 G A CMKLR1 Missense_Mutation p.S174F 0.70 tolerated(0.56) benign(0.078) TCGA-DA-A95Z-06 12 109309573 109309573 G A SVOP Missense_Mutation p.P411S 0.73 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 12 10961782 10961782 C T TAS2R9 Missense_Mutation p.R298K 0.22 tolerated(0.62) benign(0.005) TCGA-DA-A95Z-06 12 109843789 109843789 C T MYO1H Silent p.D288D 0.48 TCGA-DA-A95Z-06 12 111746104 111746104 G A CUX2 Missense_Mutation p.M375I 0.18 deleterious(0.04) possibly_damaging(0.471) TCGA-DA-A95Z-06 12 111758239 111758239 C T CUX2 Missense_Mutation p.S809F 0.62 deleterious(0.04) probably_damaging(0.986) TCGA-DA-A95Z-06 12 112600135 112600135 C T HECTD4 3'UTR 0.12 TCGA-DA-A95Z-06 12 113824758 113824758 T C PLBD2 Missense_Mutation p.F435L 0.19 deleterious(0) probably_damaging(0.984) TCGA-DA-A95Z-06 12 117013757 117013757 G A MAP1LC3B2 Missense_Mutation p.E4K 0.23 tolerated(0.82) benign(0) TCGA-DA-A95Z-06 12 117662897 117662897 G A NOS1 Silent p.I1284I 0.19 TCGA-DA-A95Z-06 12 117669896 117669896 G A NOS1 Silent p.P1126P 0.69 TCGA-DA-A95Z-06 12 117685228 117685228 G A NOS1 Silent p.I950I 0.65 TCGA-DA-A95Z-06 12 117914393 117914393 C T KSR2 Missense_Mutation p.D820N 0.17 tolerated(1) benign(0) TCGA-DA-A95Z-06 12 118582506 118582506 C T PEBP1 Silent p.F154F 0.18 TCGA-DA-A95Z-06 12 120156650 120156650 C T CIT Missense_Mutation p.R1286Q 0.66 tolerated(0.15) probably_damaging(0.943) TCGA-DA-A95Z-06 12 120241121 120241121 G A CIT Missense_Mutation p.S395L 0.18 tolerated(0.39) benign(0.009) TCGA-DA-A95Z-06 12 122999756 122999756 A G RSRC2 Silent p.I207I 0.20 TCGA-DA-A95Z-06 12 123213940 123213940 G A HCAR1 Missense_Mutation p.S316L 0.67 tolerated(0.08) benign(0.003) TCGA-DA-A95Z-06 12 123290805 123290805 T A CCDC62 Nonsense_Mutation p.L605* 0.21 TCGA-DA-A95Z-06 12 123476345 123476345 G A PITPNM2 Intron 0.18 TCGA-DA-A95Z-06 12 123476346 123476346 G A PITPNM2 Intron 0.19 TCGA-DA-A95Z-06 12 124197217 124197217 C T ATP6V0A2 Silent p.V35V 0.56 TCGA-DA-A95Z-06 12 124197218 124197218 C T ATP6V0A2 Nonsense_Mutation p.Q36* 0.56 TCGA-DA-A95Z-06 12 124303715 124303715 G A DNAH10 Missense_Mutation p.M1188I 0.19 benign(0) TCGA-DA-A95Z-06 12 129559510 129559510 G A TMEM132D Missense_Mutation p.S737F 0.25 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 12 129569274 129569274 G A TMEM132D Intron 0.17 TCGA-DA-A95Z-06 12 129694197 129694197 G A TMEM132D Silent p.I437I 0.14 TCGA-DA-A95Z-06 12 130184484 130184484 G A TMEM132D Missense_Mutation p.S280F 0.68 deleterious(0.04) benign(0.213) TCGA-DA-A95Z-06 12 131487778 131487778 G A GPR133 Missense_Mutation p.G359S 0.45 tolerated(0.56) benign(0.015) TCGA-DA-A95Z-06 12 13716069 13716069 C T GRIN2B Missense_Mutation p.G1368D 0.63 tolerated(0.28) benign(0.207) TCGA-DA-A95Z-06 12 13716959 13716959 C T GRIN2B Silent p.G1071G 0.68 TCGA-DA-A95Z-06 12 15656965 15656965 G A PTPRO Missense_Mutation p.R410Q 0.19 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-DA-A95Z-06 12 21294521 21294521 C T SLCO1B1 Nonsense_Mutation p.Q5* 0.16 TCGA-DA-A95Z-06 12 25148820 25148820 C T C12orf77 Missense_Mutation p.E110K 0.12 tolerated_low_confidence(0.4) benign(0.023) TCGA-DA-A95Z-06 12 27110594 27110594 G A FGFR1OP2 Missense_Mutation p.R105Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-DA-A95Z-06 12 27470306 27470306 C T STK38L Missense_Mutation p.P292L 0.17 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 12 31116949 31116949 C T TSPAN11 Silent p.S91S 0.23 TCGA-DA-A95Z-06 12 32135506 32135506 G A KIAA1551 Silent p.L539L 0.48 TCGA-DA-A95Z-06 12 33559894 33559894 G A SYT10 Missense_Mutation p.P303S 0.21 tolerated(0.35) possibly_damaging(0.874) TCGA-DA-A95Z-06 12 33560247 33560247 G A SYT10 Missense_Mutation p.S185F 0.65 deleterious(0) possibly_damaging(0.732) TCGA-DA-A95Z-06 12 3678659 3678659 T C PRMT8 Missense_Mutation p.M214T 0.66 deleterious(0) benign(0.334) TCGA-DA-A95Z-06 12 40041719 40041719 C T C12orf40 Silent p.F170F 0.61 TCGA-DA-A95Z-06 12 41967292 41967292 G A PDZRN4 Missense_Mutation p.R904K 0.15 deleterious(0) probably_damaging(0.977) TCGA-DA-A95Z-06 12 42864104 42864104 C T PRICKLE1 Missense_Mutation p.G64R 0.77 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 12 44915902 44915902 G A NELL2 Missense_Mutation p.L736F 0.70 tolerated(0.12) probably_damaging(0.996) TCGA-DA-A95Z-06 12 48183339 48183339 G A HDAC7 Missense_Mutation p.P705L 0.76 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 12 48192372 48192372 G C HDAC7 Missense_Mutation p.L108V 0.20 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 12 48919495 48919495 C T OR8S1 Silent p.L27L 0.62 TCGA-DA-A95Z-06 12 48919978 48919978 C T OR8S1 Silent p.S188S 0.74 TCGA-DA-A95Z-06 12 48962935 48962935 G A LALBA Silent p.I74I 0.57 TCGA-DA-A95Z-06 12 49332859 49332859 G A AC073610.5 Silent p.I14I 0.62 TCGA-DA-A95Z-06 12 5153697 5153697 G A KCNA5 Silent p.G128G 0.19 TCGA-DA-A95Z-06 12 51584041 51584041 G A POU6F1 Nonsense_Mutation p.Q299* 0.67 TCGA-DA-A95Z-06 12 51685443 51685443 C T BIN2 Missense_Mutation p.E483K 0.20 deleterious_low_confidence(0) benign(0.213) TCGA-DA-A95Z-06 12 51773241 51773241 C T GALNT6 Missense_Mutation p.D109N 0.27 tolerated(0.07) benign(0.183) TCGA-DA-A95Z-06 12 51865278 51865278 C T SLC4A8 Silent p.I622I 0.74 TCGA-DA-A95Z-06 12 51882517 51882517 C T SLC4A8 Missense_Mutation p.P774L 0.67 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 12 52167999 52167999 G A SCN8A Silent p.Q1224Q 0.69 TCGA-DA-A95Z-06 12 52841354 52841354 C T KRT6B Silent p.L476L 0.59 TCGA-DA-A95Z-06 12 52911484 52911484 C T KRT5 Missense_Mutation p.D328N 0.22 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 12 53164958 53164958 C T KRT76 Missense_Mutation p.E437K 0.56 deleterious(0) probably_damaging(0.983) TCGA-DA-A95Z-06 12 53186124 53186124 G A KRT3 Missense_Mutation p.R363C 0.27 deleterious(0.01) possibly_damaging(0.478) TCGA-DA-A95Z-06 12 53186527 53186527 C T KRT3 Missense_Mutation p.E331K 0.66 deleterious(0) probably_damaging(0.967) TCGA-DA-A95Z-06 12 53241820 53241820 C T KRT78 Missense_Mutation p.G157D 0.23 tolerated(0.08) benign(0.022) TCGA-DA-A95Z-06 12 53825162 53825162 C T AMHR2 Missense_Mutation p.P543S 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-DA-A95Z-06 12 54119032 54119032 C T CALCOCO1 5'UTR 0.53 TCGA-DA-A95Z-06 12 55420401 55420401 G A NEUROD4 Missense_Mutation p.E60K 0.67 deleterious(0.03) benign(0.276) TCGA-DA-A95Z-06 12 55615378 55615378 G A OR10A7 Silent p.V190V 0.23 TCGA-DA-A95Z-06 12 55615667 55615667 C T OR10A7 Missense_Mutation p.P287S 0.17 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 12 55641589 55641589 A T OR6C74 Missense_Mutation p.D173V 0.65 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-DA-A95Z-06 12 55846811 55846811 G A OR6C2 Missense_Mutation p.V272I 0.62 tolerated_low_confidence(0.1) benign(0.208) TCGA-DA-A95Z-06 12 55945706 55945706 G A OR6C4 Silent p.R232R 0.61 TCGA-DA-A95Z-06 12 55945805 55945805 A T OR6C4 Silent p.G265G 0.65 TCGA-DA-A95Z-06 12 56744211 56744211 G A STAT2 Missense_Mutation p.P367L 0.17 tolerated(0.06) benign(0.102) TCGA-DA-A95Z-06 12 57423361 57423361 C T MYO1A Missense_Mutation p.R912Q 0.65 tolerated(0.09) benign(0.313) TCGA-DA-A95Z-06 12 57437748 57437748 G A MYO1A Nonsense_Mutation p.R262* 0.65 TCGA-DA-A95Z-06 12 57490224 57490224 G A STAT6 3'UTR 0.70 TCGA-DA-A95Z-06 12 57864291 57864291 C T GLI1 Missense_Mutation p.R590W 0.68 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 12 57963077 57963077 G A KIF5A Silent p.R286R 0.62 TCGA-DA-A95Z-06 12 6085308 6085308 G A VWF Missense_Mutation p.S2469F 0.18 tolerated(0.56) probably_damaging(0.951) TCGA-DA-A95Z-06 12 6125285 6125285 C T VWF Missense_Mutation p.D1809N 0.20 tolerated(0.29) benign(0.028) TCGA-DA-A95Z-06 12 6127868 6127868 G A VWF Silent p.G1572G 0.19 TCGA-DA-A95Z-06 12 64377820 64377820 G A SRGAP1 Missense_Mutation p.R54Q 0.67 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Z-06 12 6635642 6635642 C T NCAPD2 Silent p.I865I 0.23 TCGA-DA-A95Z-06 12 66725087 66725087 C T HELB Missense_Mutation p.P942S 0.24 deleterious(0.04) possibly_damaging(0.564) TCGA-DA-A95Z-06 12 66786096 66786096 C T GRIP1 Missense_Mutation p.G767E 0.69 deleterious(0.01) benign(0.061) TCGA-DA-A95Z-06 12 6753431 6753431 T C ACRBP Silent p.V272V 0.19 TCGA-DA-A95Z-06 12 6781595 6781595 G A ZNF384 Missense_Mutation p.H339Y 0.22 deleterious(0) benign(0.087) TCGA-DA-A95Z-06 12 7066869 7066869 C T PTPN6 Missense_Mutation p.P376L 0.59 tolerated(0.33) benign(0.002) TCGA-DA-A95Z-06 12 71526492 71526492 C T TSPAN8 Missense_Mutation p.G186E 0.21 tolerated(0.06) possibly_damaging(0.772) TCGA-DA-A95Z-06 12 72176367 72176367 G A RAB21 Missense_Mutation p.G155E 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-DA-A95Z-06 12 7522100 7522100 C T CD163L1 Missense_Mutation p.D1298N 0.69 tolerated(0.06) benign(0.099) TCGA-DA-A95Z-06 12 7864127 7864127 C T DPPA3 5'UTR 0.78 TCGA-DA-A95Z-06 12 81112738 81112738 G A MYF5 Missense_Mutation p.D226N 0.20 tolerated(0.17) benign(0.067) TCGA-DA-A95Z-06 12 81533023 81533023 C T ACSS3 Silent p.L253L 0.60 TCGA-DA-A95Z-06 12 81610752 81610752 G A ACSS3 Missense_Mutation p.G476E 0.12 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 12 81613796 81613796 G A ACSS3 Missense_Mutation p.M485I 0.17 tolerated(0.05) benign(0.11) TCGA-DA-A95Z-06 12 81624853 81624853 G A ACSS3 Missense_Mutation p.G511E 0.27 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 12 85279233 85279233 C T SLC6A15 Silent p.V185V 0.65 TCGA-DA-A95Z-06 12 85449483 85449483 C T LRRIQ1 Silent p.G304G 0.52 TCGA-DA-A95Z-06 12 86198798 86198798 C T RASSF9 Silent p.L330L 0.65 TCGA-DA-A95Z-06 12 9021767 9021767 G A A2ML1 Missense_Mutation p.G1397R 0.20 tolerated(0.37) benign(0.033) TCGA-DA-A95Z-06 12 91348220 91348220 C T CCER1 Nonsense_Mutation p.W100* 0.63 TCGA-DA-A95Z-06 12 91502014 91502014 C T LUM Missense_Mutation p.G248E 0.71 tolerated(0.09) probably_damaging(0.922) TCGA-DA-A95Z-06 12 9305940 9305940 C T PZP Splice_Site p.X1259_splice 0.64 TCGA-DA-A95Z-06 12 95424506 95424506 T C NR2C1 Intron 0.74 TCGA-DA-A95Z-06 12 97051755 97051755 G A C12orf55 Silent p.L1732L 0.65 TCGA-DA-A95Z-06 12 97051880 97051880 C T C12orf55 Missense_Mutation p.S1774L 0.18 deleterious(0) possibly_damaging(0.448) TCGA-DA-A95Z-06 12 97957650 97957650 A T MIR135A2 RNA 0.21 TCGA-DA-A95Z-06 12 98126960 98126960 T C RP11-1016B18.1 RNA 0.75 TCGA-DA-A95Z-06 12 99008011 99008011 C T IKBIP Silent p.R135R 0.45 TCGA-DA-A95Z-06 13 109475540 109475540 G A MYO16 Missense_Mutation p.M315I 0.40 tolerated(0.18) benign(0.002) TCGA-DA-A95Z-06 13 109610075 109610075 G A MYO16 Silent p.G633G 0.37 TCGA-DA-A95Z-06 13 109779911 109779911 G A MYO16 Intron 0.38 TCGA-DA-A95Z-06 13 111158781 111158781 G A COL4A2 Silent p.G1474G 0.24 TCGA-DA-A95Z-06 13 113088810 113088810 C T SPACA7 Missense_Mutation p.H179Y 0.37 tolerated_low_confidence(0.2) benign(0.003) TCGA-DA-A95Z-06 13 113181716 113181716 G A TUBGCP3 Missense_Mutation p.S473L 0.43 deleterious(0) benign(0.097) TCGA-DA-A95Z-06 13 113219480 113219480 C T TUBGCP3 Missense_Mutation p.R66Q 0.41 tolerated(0.16) benign(0.412) TCGA-DA-A95Z-06 13 113854824 113854824 C T PCID2 Missense_Mutation p.E15K 0.40 tolerated(0.32) benign(0.038) TCGA-DA-A95Z-06 13 114150193 114150193 C T TMCO3 Silent p.F99F 0.39 TCGA-DA-A95Z-06 13 114193713 114193713 C T TMCO3 Silent p.F527F 0.62 TCGA-DA-A95Z-06 13 21562905 21562905 G A LATS2 Silent p.F338F 0.23 TCGA-DA-A95Z-06 13 21565416 21565416 G A LATS2 Missense_Mutation p.S157F 0.26 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 13 25672150 25672150 C T PABPC3 Missense_Mutation p.A605V 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A95Z-06 13 27254337 27254337 G A WASF3 Intron 0.54 TCGA-DA-A95Z-06 13 29001417 29001417 G A FLT1 Missense_Mutation p.P439S 0.41 tolerated(0.2) benign(0.259) TCGA-DA-A95Z-06 13 32363305 32363305 C T RXFP2 Nonsense_Mutation p.Q374* 0.38 TCGA-DA-A95Z-06 13 32527608 32527608 C T EEF1DP3 3'Flank 0.28 TCGA-DA-A95Z-06 13 32906738 32906738 C T BRCA2 Missense_Mutation p.P375S 0.39 tolerated(0.08) possibly_damaging(0.804) TCGA-DA-A95Z-06 13 32915052 32915052 C T BRCA2 Missense_Mutation p.P2187L 0.46 tolerated(0.23) probably_damaging(0.932) TCGA-DA-A95Z-06 13 33635362 33635362 G A KL Missense_Mutation p.E716K 0.49 tolerated(0.74) benign(0.013) TCGA-DA-A95Z-06 13 33638137 33638137 T C KL Silent p.N951N 0.25 TCGA-DA-A95Z-06 13 38211735 38211735 G A TRPC4 Missense_Mutation p.R752C 0.46 deleterious(0) probably_damaging(0.987) TCGA-DA-A95Z-06 13 39454766 39454766 A G FREM2 Missense_Mutation p.T3118A 0.26 tolerated_low_confidence(0.67) benign(0) TCGA-DA-A95Z-06 13 39550716 39550716 G A STOML3 Missense_Mutation p.R64C 0.21 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 13 41134762 41134762 C T FOXO1 Missense_Mutation p.G289E 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Z-06 13 42793391 42793391 G A DGKH Missense_Mutation p.R1080Q 0.63 tolerated(0.64) benign(0.004) TCGA-DA-A95Z-06 13 46357646 46357646 C T SIAH3 Missense_Mutation p.V228M 0.42 deleterious(0.01) possibly_damaging(0.633) TCGA-DA-A95Z-06 13 50066075 50066075 C T SETDB2 3'UTR 0.59 TCGA-DA-A95Z-06 13 53211452 53211452 C T HNRNPA1L2 5'UTR 0.55 TCGA-DA-A95Z-06 13 60384965 60384965 G A DIAPH3 Silent p.L1040L 0.19 TCGA-DA-A95Z-06 13 70314667 70314667 G A KLHL1 Missense_Mutation p.P554L 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-DA-A95Z-06 13 70314669 70314669 G A KLHL1 Silent p.G553G 0.22 TCGA-DA-A95Z-06 13 72131228 72131228 G A DACH1 Missense_Mutation p.P502S 0.48 benign(0.227) TCGA-DA-A95Z-06 14 100344907 100344907 C T EML1 Missense_Mutation p.R176C 0.60 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 14 100615350 100615350 C T DEGS2 Silent p.V260V 0.53 TCGA-DA-A95Z-06 14 100743920 100743920 G A YY1 Missense_Mutation p.A410T 0.20 tolerated(0.64) benign(0.119) TCGA-DA-A95Z-06 14 102695912 102695912 G A MOK Missense_Mutation p.S355L 0.28 deleterious(0.01) benign(0.194) TCGA-DA-A95Z-06 14 104518379 104518379 T G TDRD9 Missense_Mutation p.F1370C 0.62 tolerated(0.17) benign(0.001) TCGA-DA-A95Z-06 14 105352930 105352930 C G CEP170B Nonsense_Mutation p.S785* 0.50 TCGA-DA-A95Z-06 14 105412830 105412830 C T AHNAK2 Silent p.P2986P 0.06 TCGA-DA-A95Z-06 14 105818755 105818755 C T PACS2 Missense_Mutation p.P83L 0.20 deleterious(0) possibly_damaging(0.802) TCGA-DA-A95Z-06 14 106236254 106236254 G A IGHG3 Missense_Mutation p.S184F 0.55 deleterious(0) probably_damaging(0.963) TCGA-DA-A95Z-06 14 106321628 106321628 C T IGHM Silent p.R202R 0.50 TCGA-DA-A95Z-06 14 106791052 106791052 T A IGHV3-30 Missense_Mutation p.M102L 0.34 deleterious_low_confidence(0.02) benign(0.019) TCGA-DA-A95Z-06 14 106829721 106829721 C T IGHV4-34 Missense_Mutation p.G81E 0.60 deleterious(0.01) benign(0.105) TCGA-DA-A95Z-06 14 106829896 106829896 C T IGHV4-34 Splice_Site p.X23_splice 0.47 TCGA-DA-A95Z-06 14 107013179 107013179 A C IGHV3-49 Missense_Mutation p.L39R 0.50 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-DA-A95Z-06 14 107083244 107083244 C T IGHV4-59 Silent p.R120R 0.39 TCGA-DA-A95Z-06 14 19377893 19377893 C T OR11H12 Silent p.F100F 0.56 TCGA-DA-A95Z-06 14 19553454 19553454 C T POTEG Missense_Mutation p.S13F 0.12 deleterious_low_confidence(0.03) benign(0.002) TCGA-DA-A95Z-06 14 19988176 19988176 C T POTEM 3'UTR 1.00 TCGA-DA-A95Z-06 14 20020183 20020183 G A POTEM Missense_Mutation p.S13F 0.16 deleterious_low_confidence(0.03) probably_damaging(0.974) TCGA-DA-A95Z-06 14 20216503 20216503 C T OR4Q3 Missense_Mutation p.P306L 0.25 tolerated(0.31) benign(0.001) TCGA-DA-A95Z-06 14 20248610 20248610 C T OR4M1 Silent p.I43I 0.25 TCGA-DA-A95Z-06 14 20296334 20296334 C T OR4N2 Missense_Mutation p.H243Y 0.56 deleterious(0) probably_damaging(0.965) TCGA-DA-A95Z-06 14 20296404 20296404 C T OR4N2 Missense_Mutation p.P266L 0.23 deleterious(0.04) benign(0.046) TCGA-DA-A95Z-06 14 20388982 20388982 C T OR4K5 Nonsense_Mutation p.Q73* 0.33 TCGA-DA-A95Z-06 14 20389381 20389381 C T OR4K5 Missense_Mutation p.L206F 0.24 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Z-06 14 20770119 20770119 G A TTC5 Silent p.L19L 0.62 TCGA-DA-A95Z-06 14 20852254 20852254 G A TEP1 Silent p.P1159P 0.53 TCGA-DA-A95Z-06 14 21024963 21024963 C T RNASE9 Missense_Mutation p.G94E 0.52 tolerated(0.37) benign(0) TCGA-DA-A95Z-06 14 21469137 21469137 C T SLC39A2 Missense_Mutation p.S110F 0.57 deleterious(0) probably_damaging(0.983) TCGA-DA-A95Z-06 14 21486399 21486399 C T NDRG2 Splice_Site p.X288_splice 0.37 TCGA-DA-A95Z-06 14 21486626 21486626 G A NDRG2 Missense_Mutation p.S284L 0.50 deleterious(0) possibly_damaging(0.81) TCGA-DA-A95Z-06 14 21558706 21558707 - C ZNF219 Frame_Shift_Ins p.Q720Afs*13 0.13 TCGA-DA-A95Z-06 14 21862073 21862073 G A CHD8 Missense_Mutation p.R1961C 0.45 deleterious(0.01) possibly_damaging(0.759) TCGA-DA-A95Z-06 14 21862074 21862074 G A CHD8 Silent p.A1960A 0.46 TCGA-DA-A95Z-06 14 22315261 22315261 C T TRAV8-2 Silent p.L67L 0.29 TCGA-DA-A95Z-06 14 22458991 22458991 G A TRAV16 Missense_Mutation p.G48E 0.24 tolerated(0.08) possibly_damaging(0.806) TCGA-DA-A95Z-06 14 22476271 22476271 C T TRAV19 Silent p.F67F 0.58 TCGA-DA-A95Z-06 14 22591459 22591459 C T TRAV26-1 5'UTR 0.75 TCGA-DA-A95Z-06 14 22616448 22616448 C T TRAV27 Silent p.L63L 0.72 TCGA-DA-A95Z-06 14 22690342 22690342 G A TRAV35 Missense_Mutation p.D101N 0.29 tolerated(0.05) probably_damaging(0.943) TCGA-DA-A95Z-06 14 22994656 22994656 G A TRAJ18 Missense_Mutation p.G13E 0.31 unknown(0) TCGA-DA-A95Z-06 14 23586765 23586765 G A CEBPE Silent p.T259T 0.32 TCGA-DA-A95Z-06 14 23586766 23586766 G A CEBPE Missense_Mutation p.T259I 0.32 deleterious(0) probably_damaging(0.981) TCGA-DA-A95Z-06 14 23778245 23778245 T A BCL2L2 3'UTR 0.61 TCGA-DA-A95Z-06 14 23845049 23845049 C T IL25 Missense_Mutation p.S165F 0.61 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A95Z-06 14 23885487 23885487 C A MYH7 Missense_Mutation p.R1560L 0.45 deleterious(0) probably_damaging(0.989) TCGA-DA-A95Z-06 14 23892899 23892899 C T MYH7 Missense_Mutation p.D986N 0.33 tolerated(0.13) probably_damaging(0.971) TCGA-DA-A95Z-06 14 24040210 24040210 G A JPH4 Missense_Mutation p.S577L 0.35 tolerated(0.19) benign(0.001) TCGA-DA-A95Z-06 14 24517973 24517973 G A LRRC16B 5'Flank 0.24 TCGA-DA-A95Z-06 14 24632699 24632699 C T IRF9 Silent p.L159L 0.58 TCGA-DA-A95Z-06 14 24885800 24885800 G A NYNRIN Silent p.S1615S 0.42 TCGA-DA-A95Z-06 14 31404502 31404502 A C STRN3 Missense_Mutation p.N285K 0.57 tolerated(0.44) benign(0.007) TCGA-DA-A95Z-06 14 32563447 32563447 G A ARHGAP5 Missense_Mutation p.R1191K 0.59 tolerated(0.65) benign(0.005) TCGA-DA-A95Z-06 14 33293030 33293030 C T AKAP6 Missense_Mutation p.S2004L 0.59 deleterious(0.03) benign(0.002) TCGA-DA-A95Z-06 14 34269413 34269413 C T NPAS3 Missense_Mutation p.P634S 0.38 tolerated_low_confidence(0.28) probably_damaging(0.968) TCGA-DA-A95Z-06 14 35005437 35005437 T C EAPP Missense_Mutation p.Q40R 0.52 tolerated(0.07) possibly_damaging(0.609) TCGA-DA-A95Z-06 14 35262076 35262076 T G BAZ1A Missense_Mutation p.E472A 0.32 deleterious(0) possibly_damaging(0.893) TCGA-DA-A95Z-06 14 36003557 36003557 G A INSM2 Silent p.G33G 0.66 TCGA-DA-A95Z-06 14 36946289 36946289 C T SFTA3 Missense_Mutation p.E50K 0.25 tolerated_low_confidence(0.17) possibly_damaging(0.486) TCGA-DA-A95Z-06 14 38061523 38061523 C A FOXA1 Missense_Mutation p.G156C 0.24 tolerated(0.05) benign(0.378) TCGA-DA-A95Z-06 14 38678861 38678861 G A SSTR1 Missense_Mutation p.M89I 0.47 deleterious(0.05) possibly_damaging(0.708) TCGA-DA-A95Z-06 14 45645609 45645609 G A FANCM Missense_Mutation p.E1218K 0.26 deleterious(0.02) benign(0.421) TCGA-DA-A95Z-06 14 50585558 50585558 G C SOS2 Missense_Mutation p.S1168C 0.29 tolerated(0.17) benign(0.315) TCGA-DA-A95Z-06 14 50625350 50625350 G A SOS2 Missense_Mutation p.R623C 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 14 51355610 51355610 C T ABHD12B Missense_Mutation p.P257S 0.25 deleterious(0) possibly_damaging(0.825) TCGA-DA-A95Z-06 14 55453947 55453947 A C WDHD1 Missense_Mutation p.V562G 0.33 deleterious(0) probably_damaging(0.942) TCGA-DA-A95Z-06 14 55475041 55475041 G A WDHD1 Missense_Mutation p.S166L 0.34 tolerated(0.22) benign(0.003) TCGA-DA-A95Z-06 14 55518363 55518363 G A MAPK1IP1L 5'UTR 0.61 TCGA-DA-A95Z-06 14 55836500 55836500 G A ATG14 Missense_Mutation p.P439L 0.25 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 14 58471841 58471841 G A C14orf37 Silent p.F727F 0.60 TCGA-DA-A95Z-06 14 59791096 59791096 C T DAAM1 Missense_Mutation p.R305C 0.34 deleterious(0) unknown(0) TCGA-DA-A95Z-06 14 62541935 62541935 C T SYT16 Silent p.S273S 0.56 TCGA-DA-A95Z-06 14 63174459 63174459 C T KCNH5 Missense_Mutation p.E912K 0.31 deleterious_low_confidence(0) benign(0.265) TCGA-DA-A95Z-06 14 63749871 63749871 C T RHOJ Silent p.A145A 0.12 TCGA-DA-A95Z-06 14 64855014 64855014 G A MTHFD1 5'Flank 0.61 TCGA-DA-A95Z-06 14 68040016 68040016 C T PLEKHH1 Silent p.Y584Y 0.26 TCGA-DA-A95Z-06 14 69805411 69805411 C T GALNT16 Silent p.I337I 0.30 TCGA-DA-A95Z-06 14 70177820 70177820 C T KIAA0247 3'UTR 0.40 TCGA-DA-A95Z-06 14 70633595 70633595 G A SLC8A3 Silent p.S515S 0.58 TCGA-DA-A95Z-06 14 70633788 70633788 C T SLC8A3 Missense_Mutation p.G451D 0.29 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Z-06 14 74010203 74010203 T G ACOT1 Missense_Mutation p.C370W 0.32 deleterious(0) possibly_damaging(0.751) TCGA-DA-A95Z-06 14 74010204 74010204 C T ACOT1 Missense_Mutation p.R371W 0.32 tolerated(0.2) benign(0.023) TCGA-DA-A95Z-06 14 74824281 74824281 A G VRTN Silent p.S265S 0.49 TCGA-DA-A95Z-06 14 74970033 74970033 C T LTBP2 Missense_Mutation p.D1593N 0.32 tolerated(0.9) possibly_damaging(0.717) TCGA-DA-A95Z-06 14 75078493 75078493 C T LTBP2 Missense_Mutation p.R52Q 0.38 tolerated(0.08) possibly_damaging(0.649) TCGA-DA-A95Z-06 14 75373610 75373610 C T RPS6KL1 3'UTR 0.53 TCGA-DA-A95Z-06 14 75747703 75747703 C T FOS Missense_Mutation p.T240I 0.60 tolerated(0.2) benign(0.003) TCGA-DA-A95Z-06 14 77245410 77245410 C T VASH1 3'UTR 0.39 TCGA-DA-A95Z-06 14 77255595 77255595 G A ANGEL1 Silent p.F663F 0.66 TCGA-DA-A95Z-06 14 89063142 89063142 G T ZC3H14 Missense_Mutation p.Q448H 0.57 deleterious(0.04) benign(0.007) TCGA-DA-A95Z-06 14 90650603 90650603 C T KCNK13 Silent p.H161H 0.19 TCGA-DA-A95Z-06 14 90650604 90650604 C T KCNK13 Nonsense_Mutation p.Q162* 0.18 TCGA-DA-A95Z-06 14 91739775 91739775 C T CCDC88C Missense_Mutation p.E1761K 0.40 tolerated(0.19) possibly_damaging(0.747) TCGA-DA-A95Z-06 14 93429179 93429179 G A ITPK1 Missense_Mutation p.S127L 0.62 deleterious(0.01) benign(0.05) TCGA-DA-A95Z-06 14 94245595 94245595 G A PRIMA1 Silent p.C52C 0.81 TCGA-DA-A95Z-06 14 94770714 94770714 C T SERPINA6 3'UTR 0.59 TCGA-DA-A95Z-06 14 95669415 95669415 G A CLMN Silent p.L757L 0.28 TCGA-DA-A95Z-06 14 96795945 96795945 G A ATG2B Missense_Mutation p.S586F 0.52 deleterious(0.02) probably_damaging(0.982) TCGA-DA-A95Z-06 15 101432806 101432806 G T ALDH1A3 Missense_Mutation p.G146V 0.80 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 15 102516429 102516429 A T WASH3P 3'Flank 0.19 TCGA-DA-A95Z-06 15 20193344 20193344 G A IGHV3OR15-7 Silent p.F9F 0.36 TCGA-DA-A95Z-06 15 20657744 20657744 G A HERC2P3 RNA 0.20 TCGA-DA-A95Z-06 15 22368704 22368704 C T OR4M2 Silent p.I43I 0.10 TCGA-DA-A95Z-06 15 22369068 22369068 C T OR4M2 Nonsense_Mutation p.R165* 0.11 TCGA-DA-A95Z-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.09 deleterious(0.01) benign(0.037) TCGA-DA-A95Z-06 15 24921447 24921447 C T NPAP1 Missense_Mutation p.L145F 0.49 tolerated(0.7) probably_damaging(0.952) TCGA-DA-A95Z-06 15 25313007 25313007 C T SNORD116-7 RNA 0.40 TCGA-DA-A95Z-06 15 25417607 25417607 G A SNORD115-3 5'Flank 0.24 TCGA-DA-A95Z-06 15 25448303 25448303 C T SNORD115-20 5'Flank 0.28 TCGA-DA-A95Z-06 15 27571953 27571953 C T GABRG3 Intron 0.46 TCGA-DA-A95Z-06 15 31332330 31332330 G A TRPM1 Silent p.P786P 0.39 TCGA-DA-A95Z-06 15 31819500 31819500 A G OTUD7A Missense_Mutation p.F222L 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-DA-A95Z-06 15 31851206 31851206 G A OTUD7A Silent p.I172I 0.42 TCGA-DA-A95Z-06 15 33916148 33916148 G A RYR3 Missense_Mutation p.G833D 0.41 probably_damaging(0.986) TCGA-DA-A95Z-06 15 33927893 33927893 G A RYR3 Missense_Mutation p.G1085E 0.56 probably_damaging(1) TCGA-DA-A95Z-06 15 33939646 33939646 C T RYR3 Silent p.L1321L 0.35 TCGA-DA-A95Z-06 15 34118463 34118463 G A RYR3 Silent p.R3719R 0.46 TCGA-DA-A95Z-06 15 34130283 34130283 C T RYR3 Silent p.I4034I 0.32 TCGA-DA-A95Z-06 15 40917326 40917326 G T CASC5 Nonsense_Mutation p.E1648* 0.32 TCGA-DA-A95Z-06 15 40917582 40917582 C T CASC5 Missense_Mutation p.P1733L 0.48 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 15 41149212 41149212 G A SPINT1 3'UTR 0.41 TCGA-DA-A95Z-06 15 42105934 42105934 G A MAPKBP1 Missense_Mutation p.R318Q 0.88 deleterious(0) possibly_damaging(0.801) TCGA-DA-A95Z-06 15 42851557 42851557 C T HAUS2 Silent p.L69L 0.67 TCGA-DA-A95Z-06 15 45654338 45654338 C T GATM Missense_Mutation p.R414H 0.76 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 15 48063197 48063197 C T SEMA6D Missense_Mutation p.P813S 0.82 tolerated(0.59) probably_damaging(0.997) TCGA-DA-A95Z-06 15 48426514 48426514 C T SLC24A5 Missense_Mutation p.P121S 0.81 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 15 48559869 48559869 T A SLC12A1 Missense_Mutation p.F756I 0.79 deleterious(0.03) possibly_damaging(0.692) TCGA-DA-A95Z-06 15 50211046 50211046 T G ATP8B4 Silent p.G675G 0.80 TCGA-DA-A95Z-06 15 51687103 51687103 G A GLDN Missense_Mutation p.G205R 0.86 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 15 52073357 52073357 C T TMOD2 Missense_Mutation p.L204F 0.74 deleterious(0.02) probably_damaging(0.958) TCGA-DA-A95Z-06 15 57922049 57922049 G A GCOM1 Missense_Mutation p.M225I 0.74 tolerated(0.4) benign(0.013) TCGA-DA-A95Z-06 15 63008655 63008655 G A TLN2 Silent p.L920L 0.83 TCGA-DA-A95Z-06 15 65489521 65489521 G A CILP Nonsense_Mutation p.R1035* 0.84 TCGA-DA-A95Z-06 15 65702544 65702544 C T IGDCC4 Missense_Mutation p.D179N 0.72 tolerated(0.67) benign(0.309) TCGA-DA-A95Z-06 15 68657075 68657075 G A ITGA11 Silent p.L109L 0.67 TCGA-DA-A95Z-06 15 71128783 71128783 G A LARP6 Missense_Mutation p.P88S 0.77 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 15 75105159 75105159 G A LMAN1L 5'UTR 0.76 TCGA-DA-A95Z-06 15 78588048 78588048 G A WDR61 5'UTR 0.75 TCGA-DA-A95Z-06 15 79064083 79064083 C T ADAMTS7 Silent p.R740R 0.96 TCGA-DA-A95Z-06 15 81517739 81517739 G A IL16 5'Flank 0.78 TCGA-DA-A95Z-06 15 84652061 84652061 G A ADAMTSL3 Nonsense_Mutation p.W1227* 0.79 TCGA-DA-A95Z-06 15 90768286 90768286 C T SEMA4B Silent p.F427F 0.81 TCGA-DA-A95Z-06 15 90784687 90784687 C T GDPGP1 Missense_Mutation p.P183S 0.81 tolerated(0.09) possibly_damaging(0.659) TCGA-DA-A95Z-06 15 92647600 92647600 C T SLCO3A1 Silent p.S279S 0.84 TCGA-DA-A95Z-06 15 93015491 93015491 G A C15orf32 Missense_Mutation p.G38E 0.81 tolerated_low_confidence(1) benign(0.003) TCGA-DA-A95Z-06 15 97326872 97326872 G A SPATA8 5'UTR 0.71 TCGA-DA-A95Z-06 15 99874175 99874175 C T LRRC28 Missense_Mutation p.R145C 0.73 tolerated(0.14) benign(0.001) TCGA-DA-A95Z-06 16 15692832 15692832 G A KIAA0430 Silent p.P1621P 0.22 TCGA-DA-A95Z-06 16 16302655 16302655 C T ABCC6 Missense_Mutation p.E242K 0.17 deleterious(0.03) benign(0.006) TCGA-DA-A95Z-06 16 1797168 1797168 C T MAPK8IP3 Silent p.L295L 0.89 TCGA-DA-A95Z-06 16 19451754 19451754 C T TMC5 Nonsense_Mutation p.Q132* 0.21 TCGA-DA-A95Z-06 16 20329621 20329621 C G GP2 Missense_Mutation p.G383A 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-DA-A95Z-06 16 20337683 20337683 G A GP2 Missense_Mutation p.T24I 0.17 deleterious(0.02) benign(0.05) TCGA-DA-A95Z-06 16 20471458 20471458 C T ACSM2A Nonsense_Mutation p.Q8* 0.24 TCGA-DA-A95Z-06 16 20974883 20974883 C T DNAH3 Silent p.Q3441Q 0.17 TCGA-DA-A95Z-06 16 20975047 20975047 C T DNAH3 Missense_Mutation p.E3387K 0.70 tolerated(0.53) benign(0.001) TCGA-DA-A95Z-06 16 20999097 20999097 G A DNAH3 Missense_Mutation p.S2267L 0.17 deleterious(0) probably_damaging(0.909) TCGA-DA-A95Z-06 16 21061298 21061298 G A DNAH3 Missense_Mutation p.P1427L 0.60 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 16 22142970 22142970 G A VWA3A Missense_Mutation p.E598K 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 16 22926475 22926475 C T HS3ST2 Silent p.S232S 0.64 TCGA-DA-A95Z-06 16 23224178 23224178 C T SCNN1G Missense_Mutation p.T465I 0.26 deleterious(0.02) probably_damaging(0.951) TCGA-DA-A95Z-06 16 23464224 23464224 C T COG7 Missense_Mutation p.G31E 0.69 tolerated(0.11) benign(0.02) TCGA-DA-A95Z-06 16 23497460 23497460 G A GGA2 Missense_Mutation p.S225L 0.68 tolerated(0.3) possibly_damaging(0.48) TCGA-DA-A95Z-06 16 24909387 24909387 C T SLC5A11 Silent p.F321F 0.23 TCGA-DA-A95Z-06 16 26147315 26147315 G A HS3ST4 Missense_Mutation p.D373N 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 16 27078375 27078375 C T C16orf82 RNA 0.27 TCGA-DA-A95Z-06 16 27221657 27221657 C T KDM8 Silent p.I109I 0.14 TCGA-DA-A95Z-06 16 2732752 2732752 C T KCTD5 Missense_Mutation p.S68F 0.78 deleterious(0) probably_damaging(0.99) TCGA-DA-A95Z-06 16 27475955 27475955 G A GTF3C1 Missense_Mutation p.P1853L 0.75 tolerated(0.36) benign(0.002) TCGA-DA-A95Z-06 16 28912070 28912070 A C ATP2A1 Missense_Mutation p.N645H 0.68 tolerated(0.17) benign(0.206) TCGA-DA-A95Z-06 16 29937310 29937310 G A KCTD13 Silent p.S15S 0.24 TCGA-DA-A95Z-06 16 30006952 30006952 C T HIRIP3 5'UTR 0.61 TCGA-DA-A95Z-06 16 30440524 30440524 C T DCTPP1 Intron 0.69 TCGA-DA-A95Z-06 16 30616400 30616400 C A ZNF689 Nonsense_Mutation p.E230* 0.68 TCGA-DA-A95Z-06 16 30664372 30664372 C T PRR14 Missense_Mutation p.P151L 0.69 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-DA-A95Z-06 16 30664373 30664373 C T PRR14 Silent p.P151P 0.70 TCGA-DA-A95Z-06 16 30794782 30794782 G A ZNF629 Silent p.P289P 0.62 TCGA-DA-A95Z-06 16 31234160 31234160 C T TRIM72 Silent p.I251I 0.22 TCGA-DA-A95Z-06 16 31391116 31391116 C T ITGAX Silent p.I969I 0.14 TCGA-DA-A95Z-06 16 31391335 31391335 C T ITGAX Silent p.I1003I 0.22 TCGA-DA-A95Z-06 16 31413461 31413461 C T ITGAD Silent p.I151I 0.20 TCGA-DA-A95Z-06 16 31502124 31502124 C T C16orf58 3'UTR 0.25 TCGA-DA-A95Z-06 16 31766201 31766201 A G ZNF720 Intron 0.20 TCGA-DA-A95Z-06 16 3274456 3274456 G A ZNF200 Silent p.S208S 0.87 TCGA-DA-A95Z-06 16 3633330 3633330 C T SLX4 Missense_Mutation p.V1641I 0.86 tolerated(0.2) benign(0.021) TCGA-DA-A95Z-06 16 427491 427491 G A TMEM8A Missense_Mutation p.P132S 0.88 tolerated(0.75) benign(0.008) TCGA-DA-A95Z-06 16 4494708 4494708 G A DNAJA3 Silent p.R325R 0.30 TCGA-DA-A95Z-06 16 48304040 48304040 C T LONP2 Silent p.L366L 0.28 TCGA-DA-A95Z-06 16 49671389 49671389 G A ZNF423 Silent p.S558S 0.63 TCGA-DA-A95Z-06 16 49671390 49671390 G A ZNF423 Missense_Mutation p.S558F 0.64 deleterious(0.03) possibly_damaging(0.905) TCGA-DA-A95Z-06 16 5050888 5050888 G A SEC14L5 Silent p.R364R 0.91 TCGA-DA-A95Z-06 16 50655524 50655524 C T NKD1 Missense_Mutation p.P91S 0.19 tolerated(0.05) benign(0.313) TCGA-DA-A95Z-06 16 50655525 50655525 C T NKD1 Missense_Mutation p.P91L 0.19 deleterious(0.02) benign(0.389) TCGA-DA-A95Z-06 16 51174276 51174276 G A SALL1 Silent p.P619P 0.17 TCGA-DA-A95Z-06 16 51175766 51175766 C T SALL1 Missense_Mutation p.E123K 0.66 deleterious(0.05) benign(0.003) TCGA-DA-A95Z-06 16 55523598 55523598 C T MMP2 Missense_Mutation p.P348S 0.18 tolerated(0.27) probably_damaging(1) TCGA-DA-A95Z-06 16 55690801 55690801 C T SLC6A2 Silent p.F65F 0.65 TCGA-DA-A95Z-06 16 56871561 56871561 C T NUP93 Silent p.S647S 0.57 TCGA-DA-A95Z-06 16 57059371 57059371 C T NLRC5 Silent p.F172F 0.19 TCGA-DA-A95Z-06 16 57060547 57060547 C T NLRC5 Silent p.F564F 0.22 TCGA-DA-A95Z-06 16 57719663 57719663 G A GPR97 Nonsense_Mutation p.W455* 0.73 TCGA-DA-A95Z-06 16 57741518 57741518 C T CCDC135 Silent p.F335F 0.70 TCGA-DA-A95Z-06 16 66949271 66949271 G A CDH16 Silent p.F145F 0.22 TCGA-DA-A95Z-06 16 67300116 67300116 G A SLC9A5 Missense_Mutation p.G736S 0.23 tolerated(0.75) benign(0.004) TCGA-DA-A95Z-06 16 67688390 67688390 G A RLTPR Missense_Mutation p.R1126Q 0.63 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A95Z-06 16 67963660 67963660 G A CTRL 3'UTR 0.47 TCGA-DA-A95Z-06 16 68398749 68398749 C T SMPD3 Missense_Mutation p.R487Q 0.18 tolerated(0.53) benign(0.202) TCGA-DA-A95Z-06 16 70929950 70929950 G A HYDIN Nonsense_Mutation p.Q3028* 0.73 TCGA-DA-A95Z-06 16 71103196 71103196 G A HYDIN Missense_Mutation p.R650C 0.16 probably_damaging(0.992) TCGA-DA-A95Z-06 16 71196540 71196540 C T HYDIN Missense_Mutation p.D204N 0.25 probably_damaging(0.942) TCGA-DA-A95Z-06 16 71674884 71674884 G A MARVELD3 Missense_Mutation p.G396E 0.61 tolerated(0.22) benign(0.05) TCGA-DA-A95Z-06 16 72163064 72163064 C T PMFBP1 Silent p.E617E 0.16 TCGA-DA-A95Z-06 16 72992140 72992140 G A ZFHX3 Silent p.P635P 0.74 TCGA-DA-A95Z-06 16 72992141 72992141 G A ZFHX3 Missense_Mutation p.P635L 0.75 benign(0.366) TCGA-DA-A95Z-06 16 7382981 7382981 G A RBFOX1 5'UTR 0.20 TCGA-DA-A95Z-06 16 7383026 7383026 C T RBFOX1 Silent p.L8L 0.67 TCGA-DA-A95Z-06 16 74394636 74394636 G A RP11-252A24.2 RNA 0.26 TCGA-DA-A95Z-06 16 74729244 74729244 G A MLKL Nonsense_Mutation p.Q138* 0.21 TCGA-DA-A95Z-06 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.64 TCGA-DA-A95Z-06 16 7645572 7645572 G A RBFOX1 Missense_Mutation p.E184K 0.27 deleterious(0) benign(0.28) TCGA-DA-A95Z-06 16 77317773 77317773 C T ADAMTS18 3'UTR 0.67 TCGA-DA-A95Z-06 16 77353847 77353847 C T ADAMTS18 Missense_Mutation p.E811K 0.68 tolerated(0.71) benign(0.008) TCGA-DA-A95Z-06 16 77369724 77369724 C T ADAMTS18 Silent p.S596S 0.22 TCGA-DA-A95Z-06 16 82033001 82033001 G A SDR42E1 Silent p.F299F 0.30 TCGA-DA-A95Z-06 16 83781740 83781740 T C CDH13 Silent p.G569G 0.19 TCGA-DA-A95Z-06 16 84203735 84203735 G A DNAAF1 Missense_Mutation p.G434E 0.27 tolerated(0.7) benign(0.19) TCGA-DA-A95Z-06 16 84494356 84494356 C T ATP2C2 Silent p.L810L 0.20 TCGA-DA-A95Z-06 16 85942801 85942801 G A IRF8 Intron 0.15 TCGA-DA-A95Z-06 16 85945246 85945246 C T IRF8 Silent p.I143I 0.24 TCGA-DA-A95Z-06 16 89349513 89349513 G A ANKRD11 Missense_Mutation p.T1146M 0.22 benign(0.001) TCGA-DA-A95Z-06 16 90160873 90160873 C T TUBB8P7 RNA 0.33 TCGA-DA-A95Z-06 16 960970 960970 C T LMF1 Nonsense_Mutation p.W208* 0.84 TCGA-DA-A95Z-06 16 9857454 9857454 C T GRIN2A Missense_Mutation p.R1316K 0.23 tolerated(1) benign(0.006) TCGA-DA-A95Z-06 16 9943749 9943749 C T GRIN2A Missense_Mutation p.D398N 0.17 tolerated(0.1) probably_damaging(0.998) TCGA-DA-A95Z-06 17 10222495 10222495 G A MYH13 Missense_Mutation p.A1117V 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-DA-A95Z-06 17 10267682 10267682 C T MYH13 Missense_Mutation p.E56K 0.21 tolerated(0.21) probably_damaging(0.991) TCGA-DA-A95Z-06 17 10267747 10267747 G A MYH13 Missense_Mutation p.S34F 0.60 deleterious(0.01) benign(0.265) TCGA-DA-A95Z-06 17 10346652 10346652 C T MYH4 3'UTR 0.60 TCGA-DA-A95Z-06 17 10368881 10368881 G A MYH4 Missense_Mutation p.P128L 0.50 deleterious(0.01) possibly_damaging(0.875) TCGA-DA-A95Z-06 17 10395852 10395852 G A MYH1 Missense_Mutation p.R1901C 0.27 deleterious(0) probably_damaging(0.971) TCGA-DA-A95Z-06 17 10408334 10408334 C T MYH1 Silent p.V828V 0.28 TCGA-DA-A95Z-06 17 11515056 11515056 A T DNAH9 Missense_Mutation p.Y288F 0.24 probably_damaging(0.923) TCGA-DA-A95Z-06 17 11543700 11543700 C T DNAH9 Missense_Mutation p.P634S 0.26 benign(0.175) TCGA-DA-A95Z-06 17 11835360 11835360 G A DNAH9 Silent p.T4045T 0.55 TCGA-DA-A95Z-06 17 12647507 12647507 C T MYOCD Missense_Mutation p.S242F 0.26 deleterious(0) probably_damaging(0.943) TCGA-DA-A95Z-06 17 12853009 12853009 G A ARHGAP44 Missense_Mutation p.M339I 0.62 deleterious(0) benign(0.349) TCGA-DA-A95Z-06 17 14095506 14095506 G T COX10 Missense_Mutation p.G299V 0.19 deleterious(0) probably_damaging(0.993) TCGA-DA-A95Z-06 17 16705780 16705780 G A CCDC144A 3'UTR 0.18 TCGA-DA-A95Z-06 17 17698334 17698334 C T RAI1 Missense_Mutation p.S691F 0.31 deleterious(0) possibly_damaging(0.702) TCGA-DA-A95Z-06 17 17698335 17698335 C T RAI1 Silent p.S691S 0.32 TCGA-DA-A95Z-06 17 17700029 17700029 G A RAI1 Missense_Mutation p.G1256E 0.26 tolerated(0.05) benign(0.004) TCGA-DA-A95Z-06 17 18140180 18140180 C T LLGL1 Missense_Mutation p.P513L 0.40 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 17 18143982 18143982 G A LLGL1 Missense_Mutation p.G766D 0.66 tolerated(0.1) benign(0.027) TCGA-DA-A95Z-06 17 18916677 18916677 G T SLC5A10 Missense_Mutation p.A329S 0.41 tolerated_low_confidence(0.75) benign(0.009) TCGA-DA-A95Z-06 17 19319018 19319018 G A RNF112 Missense_Mutation p.D476N 0.48 tolerated(0.14) possibly_damaging(0.57) TCGA-DA-A95Z-06 17 19610051 19610051 C T SLC47A2 Missense_Mutation p.D287N 0.61 deleterious(0) possibly_damaging(0.848) TCGA-DA-A95Z-06 17 19728484 19728484 G A ULK2 Missense_Mutation p.P283S 0.42 tolerated(0.17) possibly_damaging(0.573) TCGA-DA-A95Z-06 17 2323815 2323815 G T METTL16 Missense_Mutation p.H380N 0.25 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 17 26084337 26084337 G A NOS2 Missense_Mutation p.P1133S 0.52 tolerated(0.63) benign(0.011) TCGA-DA-A95Z-06 17 26125769 26125769 C T NOS2 Missense_Mutation p.D23N 0.38 deleterious_low_confidence(0.05) probably_damaging(1) TCGA-DA-A95Z-06 17 26692248 26692248 C T VTN 3'Flank 0.65 TCGA-DA-A95Z-06 17 26817441 26817441 C T SLC13A2 Silent p.F116F 0.60 TCGA-DA-A95Z-06 17 27903451 27903451 C T GIT1 Silent p.A475A 0.22 TCGA-DA-A95Z-06 17 28890260 28890260 C T TBC1D29 Silent p.S90S 0.23 TCGA-DA-A95Z-06 17 29161641 29161641 C T ATAD5 Missense_Mutation p.T181I 0.28 tolerated(0.24) benign(0.008) TCGA-DA-A95Z-06 17 29528462 29528462 C T NF1 Missense_Mutation p.H407Y 0.26 deleterious(0.01) benign(0.057) TCGA-DA-A95Z-06 17 29554250 29554250 C T NF1 Nonsense_Mutation p.Q756* 0.48 TCGA-DA-A95Z-06 17 29631331 29631331 C T EVI2B Missense_Mutation p.D433N 0.58 tolerated(0.47) benign(0.056) TCGA-DA-A95Z-06 17 29665823 29665823 G A NF1 Silent p.K2307K 0.23 TCGA-DA-A95Z-06 17 29679380 29679380 C T NF1 Silent p.S2521S 0.23 TCGA-DA-A95Z-06 17 30519227 30519227 C T RHOT1 Missense_Mutation p.P183L 0.31 deleterious(0.04) benign(0.019) TCGA-DA-A95Z-06 17 30677222 30677222 T C ZNF207 5'UTR 0.60 TCGA-DA-A95Z-06 17 32598743 32598743 C T CCL7 Silent p.I74I 0.30 TCGA-DA-A95Z-06 17 32614213 32614213 C T CCL11 Nonsense_Mutation p.Q59* 0.22 TCGA-DA-A95Z-06 17 33738589 33738589 G A SLFN12 Missense_Mutation p.P502L 0.64 deleterious(0.01) benign(0.073) TCGA-DA-A95Z-06 17 34958709 34958709 G A MRM1 Missense_Mutation p.R157Q 0.34 tolerated(0.27) benign(0.04) TCGA-DA-A95Z-06 17 36353673 36353673 C T RP11-1407O15.2 Nonsense_Mutation p.W396* 0.14 TCGA-DA-A95Z-06 17 36484965 36484965 C T GPR179 Missense_Mutation p.G1496E 0.26 tolerated(0.42) benign(0.022) TCGA-DA-A95Z-06 17 36552215 36552215 C T SOCS7 Silent p.S580S 0.43 TCGA-DA-A95Z-06 17 37265203 37265203 G A PLXDC1 Silent p.F141F 0.44 TCGA-DA-A95Z-06 17 37331342 37331342 G A CACNB1 3'UTR 0.53 TCGA-DA-A95Z-06 17 37455307 37455307 A G FBXL20 Missense_Mutation p.C89R 0.25 deleterious(0) probably_damaging(0.985) TCGA-DA-A95Z-06 17 37883678 37883678 G A ERBB2 Missense_Mutation p.G1097E 0.60 tolerated(0.1) benign(0.014) TCGA-DA-A95Z-06 17 37883679 37883679 G A ERBB2 Silent p.G1097G 0.59 TCGA-DA-A95Z-06 17 37903156 37903156 C T GRB7 3'UTR 0.35 TCGA-DA-A95Z-06 17 3806886 3806886 G A P2RX1 Silent p.F188F 0.32 TCGA-DA-A95Z-06 17 38250210 38250210 C T NR1D1 Missense_Mutation p.E534K 0.32 tolerated(0.08) possibly_damaging(0.744) TCGA-DA-A95Z-06 17 38556273 38556273 A T TOP2A Nonsense_Mutation p.L1016* 0.20 TCGA-DA-A95Z-06 17 39471906 39471906 C T KRTAP17-1 5'UTR 0.43 TCGA-DA-A95Z-06 17 39727887 39727887 C T KRT9 Missense_Mutation p.G120R 0.33 tolerated(0.08) unknown(0) TCGA-DA-A95Z-06 17 39727973 39727973 C T KRT9 Missense_Mutation p.G91E 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-DA-A95Z-06 17 40695557 40695557 C T NAGLU Silent p.G511G 0.19 TCGA-DA-A95Z-06 17 41576268 41576268 C T DHX8 Missense_Mutation p.P447S 0.26 tolerated(0.06) benign(0.027) TCGA-DA-A95Z-06 17 42018937 42018937 C T PPY Missense_Mutation p.G29E 0.67 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 17 42293127 42293127 G A UBTF Silent p.F123F 0.27 TCGA-DA-A95Z-06 17 42335441 42335441 C T SLC4A1 Missense_Mutation p.D399N 0.52 deleterious(0) probably_damaging(0.973) TCGA-DA-A95Z-06 17 42475201 42475201 G A GPATCH8 Missense_Mutation p.P1415L 0.60 deleterious(0) unknown(0) TCGA-DA-A95Z-06 17 42636380 42636380 C T FZD2 Missense_Mutation p.R442C 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 17 43005556 43005556 G A KIF18B Missense_Mutation p.A705V 0.62 deleterious(0.03) benign(0.126) TCGA-DA-A95Z-06 17 43009457 43009457 G A KIF18B Silent p.S452S 0.19 TCGA-DA-A95Z-06 17 43908256 43908256 C T CRHR1 Silent p.F269F 0.22 TCGA-DA-A95Z-06 17 44626479 44626479 C T LRRC37A2 Missense_Mutation p.P1325L 0.32 tolerated(0.08) benign(0.118) TCGA-DA-A95Z-06 17 45481385 45481385 C T EFCAB13 Missense_Mutation p.S720F 0.20 deleterious(0) benign(0.318) TCGA-DA-A95Z-06 17 45915695 45915695 G A SCRN2 Missense_Mutation p.R354C 0.18 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 17 46190020 46190020 C T SNX11 Missense_Mutation p.H43Y 0.35 deleterious(0.03) benign(0.232) TCGA-DA-A95Z-06 17 46607161 46607161 C T HOXB1 Silent p.L218L 0.61 TCGA-DA-A95Z-06 17 4721840 4721840 C T PLD2 Silent p.F687F 0.26 TCGA-DA-A95Z-06 17 47583819 47583819 G A NGFR Missense_Mutation p.E123K 0.67 tolerated(0.43) benign(0.018) TCGA-DA-A95Z-06 17 47684720 47684720 G A SPOP Silent p.I243I 0.28 TCGA-DA-A95Z-06 17 48187469 48187469 C T PDK2 3'UTR 0.85 TCGA-DA-A95Z-06 17 48594713 48594713 C T MYCBPAP Silent p.I131I 0.25 TCGA-DA-A95Z-06 17 48684278 48684278 C T CACNA1G Silent p.F1480F 0.55 TCGA-DA-A95Z-06 17 48750989 48750989 G A ABCC3 Missense_Mutation p.D857N 0.28 tolerated(0.36) benign(0.003) TCGA-DA-A95Z-06 17 49710943 49710943 G A CA10 Silent p.F286F 0.61 TCGA-DA-A95Z-06 17 53852192 53852192 C T PCTP Missense_Mutation p.P184L 0.62 deleterious(0.04) probably_damaging(0.995) TCGA-DA-A95Z-06 17 54534700 54534700 G A ANKFN1 Missense_Mutation p.D467N 0.18 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 17 58988015 58988015 C T BCAS3 Silent p.V315V 0.13 TCGA-DA-A95Z-06 17 60802443 60802443 C T MARCH10 Missense_Mutation p.E654K 0.73 deleterious(0.01) possibly_damaging(0.906) TCGA-DA-A95Z-06 17 61574337 61574337 C T ACE Missense_Mutation p.P1228S 0.52 tolerated(0.11) possibly_damaging(0.578) TCGA-DA-A95Z-06 17 61613352 61613352 C T KCNH6 Missense_Mutation p.T475I 0.71 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 17 62080989 62080989 C T C17orf72 3'Flank 0.56 TCGA-DA-A95Z-06 17 6337268 6337268 C T AIPL1 Missense_Mutation p.E83K 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 17 65026975 65026975 C T CACNG4 Missense_Mutation p.S280F 0.21 deleterious(0) possibly_damaging(0.541) TCGA-DA-A95Z-06 17 7155834 7155834 G C ELP5 Missense_Mutation p.E5Q 0.50 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-DA-A95Z-06 17 7161904 7161904 C T ELP5 Intron 0.54 TCGA-DA-A95Z-06 17 72285759 72285759 C T DNAI2 Missense_Mutation p.A165V 0.30 tolerated(0.46) benign(0.016) TCGA-DA-A95Z-06 17 72541040 72541040 C T CD300C Silent p.G36G 0.14 TCGA-DA-A95Z-06 17 72954805 72954805 G A HID1 Silent p.P401P 0.62 TCGA-DA-A95Z-06 17 73059132 73059132 C T KCTD2 Missense_Mutation p.S261L 0.68 deleterious(0.02) possibly_damaging(0.851) TCGA-DA-A95Z-06 17 7306491 7306491 C T TMEM256 Missense_Mutation p.C79Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 17 73519843 73519843 C T TSEN54 Silent p.A471A 0.66 TCGA-DA-A95Z-06 17 73647342 73647342 T C RECQL5 Missense_Mutation p.K385E 0.24 deleterious(0) benign(0.418) TCGA-DA-A95Z-06 17 7366581 7366581 G A ZBTB4 Missense_Mutation p.P574S 0.27 probably_damaging(0.95) TCGA-DA-A95Z-06 17 73895032 73895032 G A MRPL38 Missense_Mutation p.P348S 0.18 deleterious(0.03) benign(0.062) TCGA-DA-A95Z-06 17 74005593 74005593 C T EVPL Silent p.V1231V 0.67 TCGA-DA-A95Z-06 17 7604864 7604864 C T WRAP53 Silent p.H273H 0.49 TCGA-DA-A95Z-06 17 76502871 76502871 G A DNAH17 Silent p.F1574F 0.16 TCGA-DA-A95Z-06 17 76510940 76510940 C T DNAH17 Silent p.V1339V 0.22 TCGA-DA-A95Z-06 17 7699841 7699841 G A DNAH2 Silent p.E2578E 0.57 TCGA-DA-A95Z-06 17 7699842 7699842 G A DNAH2 Missense_Mutation p.E2579K 0.55 probably_damaging(0.992) TCGA-DA-A95Z-06 17 79514397 79514397 G A C17orf70 Nonsense_Mutation p.Q571* 0.18 TCGA-DA-A95Z-06 17 79514398 79514398 G A C17orf70 Silent p.D570D 0.19 TCGA-DA-A95Z-06 17 79671701 79671701 G A SLC25A10 Missense_Mutation p.M100I 0.65 deleterious_low_confidence(0.01) benign(0.008) TCGA-DA-A95Z-06 17 7976036 7976036 T C ALOX12B 3'UTR 0.19 TCGA-DA-A95Z-06 17 7984478 7984478 G A ALOX12B Missense_Mutation p.P127L 0.35 deleterious(0.01) possibly_damaging(0.851) TCGA-DA-A95Z-06 17 8017864 8017864 C T ALOXE3 Missense_Mutation p.M338I 0.36 deleterious(0) benign(0.01) TCGA-DA-A95Z-06 17 80209330 80209330 C T CSNK1D Silent p.R270R 0.70 TCGA-DA-A95Z-06 17 80209331 80209331 C T CSNK1D Missense_Mutation p.R270Q 0.68 deleterious_low_confidence(0.03) possibly_damaging(0.886) TCGA-DA-A95Z-06 17 80540788 80540788 C T FOXK2 Missense_Mutation p.P361S 0.19 deleterious(0) probably_damaging(0.967) TCGA-DA-A95Z-06 17 8076894 8076894 C T TMEM107 3'Flank 0.57 TCGA-DA-A95Z-06 18 14479233 14479233 C T CXADRP3 RNA 0.96 TCGA-DA-A95Z-06 18 14542672 14542672 G A POTEC Silent p.I158I 0.89 TCGA-DA-A95Z-06 18 21293922 21293922 G A LAMA3 Silent p.R111R 0.86 TCGA-DA-A95Z-06 18 28666656 28666656 C T DSC2 Silent p.T275T 0.88 TCGA-DA-A95Z-06 18 29793280 29793280 G A MEP1B Missense_Mutation p.G446E 0.85 tolerated(0.23) benign(0.02) TCGA-DA-A95Z-06 18 29847992 29847992 A T GAREM Missense_Mutation p.L825M 0.90 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A95Z-06 18 30350160 30350160 G A KLHL14 Missense_Mutation p.S132F 0.82 deleterious(0.01) benign(0.229) TCGA-DA-A95Z-06 18 30926344 30926344 C T CCDC178 Missense_Mutation p.M163I 0.87 tolerated(0.08) benign(0.175) TCGA-DA-A95Z-06 18 31326521 31326521 C T ASXL3 Missense_Mutation p.P2237S 0.85 probably_damaging(1) TCGA-DA-A95Z-06 18 42531767 42531767 G A SETBP1 Missense_Mutation p.G821E 0.84 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 18 51813751 51813751 C T POLI Missense_Mutation p.P390S 0.86 tolerated(0.06) possibly_damaging(0.453) TCGA-DA-A95Z-06 18 52265088 52265088 C T DYNAP Silent p.F115F 0.87 TCGA-DA-A95Z-06 18 52605286 52605286 G A CCDC68 Missense_Mutation p.P83S 0.86 tolerated(0.23) benign(0.01) TCGA-DA-A95Z-06 18 56825965 56825965 A G SEC11C 3'UTR 0.85 TCGA-DA-A95Z-06 18 580823 580823 G A CETN1 Missense_Mutation p.D139N 0.83 deleterious(0.03) possibly_damaging(0.703) TCGA-DA-A95Z-06 18 61309074 61309074 C T SERPINB4 Missense_Mutation p.E91K 0.80 tolerated(0.08) benign(0.172) TCGA-DA-A95Z-06 18 61323223 61323223 C T SERPINB3 Missense_Mutation p.D281N 0.83 tolerated(0.51) benign(0.026) TCGA-DA-A95Z-06 18 61620722 61620722 C T HMSD Silent p.F11F 0.83 TCGA-DA-A95Z-06 18 67425026 67425026 C T DOK6 Missense_Mutation p.S258F 0.90 deleterious(0.01) benign(0.308) TCGA-DA-A95Z-06 18 6909015 6909015 G A ARHGAP28 Missense_Mutation p.G537E 0.84 deleterious(0) probably_damaging(0.988) TCGA-DA-A95Z-06 18 6997781 6997781 C T LAMA1 Missense_Mutation p.G1589E 0.87 tolerated(0.17) benign(0.098) TCGA-DA-A95Z-06 18 7231424 7231424 C T LRRC30 Silent p.I96I 0.89 TCGA-DA-A95Z-06 18 8784071 8784071 G A SOGA2 Missense_Mutation p.G321R 0.89 tolerated(0.12) benign(0.008) TCGA-DA-A95Z-06 18 9887847 9887847 G A TXNDC2 Silent p.E457E 0.96 TCGA-DA-A95Z-06 19 10597311 10597311 C T KEAP1 3'UTR 0.59 TCGA-DA-A95Z-06 19 10692447 10692447 G A AP1M2 Silent p.T125T 0.69 TCGA-DA-A95Z-06 19 11325235 11325235 G A DOCK6 Silent p.I1399I 0.74 TCGA-DA-A95Z-06 19 11488569 11488569 G A EPOR 3'UTR 0.72 TCGA-DA-A95Z-06 19 11547290 11547290 G T PRKCSH Missense_Mutation p.D54Y 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 19 12089038 12089038 C G ZNF763 Missense_Mutation p.S103C 0.24 tolerated(0.21) possibly_damaging(0.476) TCGA-DA-A95Z-06 19 12429579 12429579 G - ZNF563 Frame_Shift_Del p.Y421Mfs*21 0.15 TCGA-DA-A95Z-06 19 12595614 12595614 A G ZNF709 5'UTR 0.60 TCGA-DA-A95Z-06 19 12774176 12774176 G T MAN2B1 Missense_Mutation p.N288K 0.20 deleterious(0) probably_damaging(0.993) TCGA-DA-A95Z-06 19 13356011 13356011 G A CACNA1A Silent p.L1645L 0.74 TCGA-DA-A95Z-06 19 13865136 13865136 C T CCDC130 Missense_Mutation p.P13S 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 19 14694234 14694234 C T CLEC17A Missense_Mutation p.P37S 0.25 tolerated_low_confidence(0.07) benign(0.003) TCGA-DA-A95Z-06 19 14854310 14854310 C T EMR2 Silent p.G795G 0.20 TCGA-DA-A95Z-06 19 14910868 14910868 G A OR7C1 Silent p.L27L 0.56 TCGA-DA-A95Z-06 19 15079226 15079226 C T SLC1A6 Missense_Mutation p.G146D 0.56 deleterious(0) possibly_damaging(0.758) TCGA-DA-A95Z-06 19 15124565 15124565 G A CCDC105 Missense_Mutation p.E218K 0.24 tolerated(0.07) probably_damaging(0.982) TCGA-DA-A95Z-06 19 15164443 15164443 G A CASP14 Splice_Site p.X59_splice 0.72 TCGA-DA-A95Z-06 19 15225908 15225908 T C ILVBL 3'UTR 0.23 TCGA-DA-A95Z-06 19 15300094 15300094 C T NOTCH3 Silent p.E394E 0.23 TCGA-DA-A95Z-06 19 15375373 15375373 C T BRD4 Missense_Mutation p.E352K 0.73 benign(0.292) TCGA-DA-A95Z-06 19 15375374 15375374 C T BRD4 Silent p.S351S 0.72 TCGA-DA-A95Z-06 19 1581171 1581171 G A MBD3 Silent p.A199A 0.17 TCGA-DA-A95Z-06 19 15918921 15918921 C T OR10H1 5'UTR 0.69 TCGA-DA-A95Z-06 19 15990223 15990223 G A CYP4F2 Missense_Mutation p.R444C 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-DA-A95Z-06 19 16040357 16040357 G A CYP4F11 Missense_Mutation p.P85S 0.20 tolerated(0.22) benign(0.034) TCGA-DA-A95Z-06 19 16339629 16339629 C T AP1M1 Missense_Mutation p.H325Y 0.66 tolerated(1) benign(0.001) TCGA-DA-A95Z-06 19 16472754 16472754 G A EPS15L1 Missense_Mutation p.P808S 0.21 tolerated(0.86) benign(0.002) TCGA-DA-A95Z-06 19 17122404 17122404 C T CPAMD8 Missense_Mutation p.R191Q 0.70 tolerated(0.08) benign(0.036) TCGA-DA-A95Z-06 19 17476301 17476301 C T PLVAP Missense_Mutation p.V325M 0.67 tolerated(0.11) benign(0.17) TCGA-DA-A95Z-06 19 17737585 17737585 C T UNC13A Silent p.P1310P 0.17 TCGA-DA-A95Z-06 19 17883263 17883263 C T FCHO1 Intron 0.59 TCGA-DA-A95Z-06 19 17922552 17922552 C T B3GNT3 Missense_Mutation p.A247V 0.76 tolerated(0.54) benign(0.003) TCGA-DA-A95Z-06 19 18218400 18218400 G T MAST3 Nonsense_Mutation p.E15* 0.20 TCGA-DA-A95Z-06 19 18232718 18232718 C T MAST3 Silent p.F73F 0.17 TCGA-DA-A95Z-06 19 18775140 18775140 G A KLHL26 Silent p.Q51Q 0.69 TCGA-DA-A95Z-06 19 18879392 18879392 C T CRTC1 Missense_Mutation p.P386L 0.78 tolerated_low_confidence(0.36) possibly_damaging(0.643) TCGA-DA-A95Z-06 19 19106069 19106069 G A SUGP2 Silent p.F1004F 0.64 TCGA-DA-A95Z-06 19 20044703 20044703 C T ZNF93 Silent p.Y313Y 0.28 TCGA-DA-A95Z-06 19 20727252 20727252 G A ZNF737 3'UTR 0.25 TCGA-DA-A95Z-06 19 21366733 21366733 G A ZNF431 Missense_Mutation p.E543K 0.24 tolerated(0.22) possibly_damaging(0.589) TCGA-DA-A95Z-06 19 21606224 21606224 C G ZNF493 Missense_Mutation p.H255D 0.26 deleterious(0) benign(0.019) TCGA-DA-A95Z-06 19 22156665 22156665 G A ZNF208 Missense_Mutation p.H391Y 0.23 deleterious(0) probably_damaging(0.983) TCGA-DA-A95Z-06 19 2226479 2226479 G C DOT1L Missense_Mutation p.G1320A 0.13 tolerated_low_confidence(0.06) benign(0.066) TCGA-DA-A95Z-06 19 22379493 22379493 G A ZNF676 5'UTR 0.15 TCGA-DA-A95Z-06 19 23927601 23927601 C A ZNF681 Missense_Mutation p.D251Y 0.25 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 19 287581 287581 G A PPAP2C Silent p.P146P 0.68 TCGA-DA-A95Z-06 19 288106 288106 C T PPAP2C Missense_Mutation p.D61N 0.26 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Z-06 19 30506029 30506029 T G URI1 3'UTR 0.79 TCGA-DA-A95Z-06 19 326596 326596 G A MIER2 Missense_Mutation p.R166C 0.70 tolerated(0.17) benign(0.004) TCGA-DA-A95Z-06 19 33350813 33350813 G A SLC7A9 Silent p.L269L 0.17 TCGA-DA-A95Z-06 19 35176511 35176511 C T ZNF302 3'UTR 0.22 TCGA-DA-A95Z-06 19 36124775 36124775 C T RBM42 Missense_Mutation p.P291S 0.71 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 19 36210895 36210895 C T KMT2B Missense_Mutation p.P216S 0.21 unknown(0) TCGA-DA-A95Z-06 19 36278571 36278571 C T ARHGAP33 Missense_Mutation p.P874L 0.66 deleterious_low_confidence(0) benign(0.1) TCGA-DA-A95Z-06 19 37310912 37310912 G A ZNF790 Missense_Mutation p.L112F 0.51 tolerated(0.14) possibly_damaging(0.786) TCGA-DA-A95Z-06 19 37310913 37310913 G A ZNF790 Silent p.S111S 0.53 TCGA-DA-A95Z-06 19 3736250 3736250 C T TJP3 Silent p.F414F 0.73 TCGA-DA-A95Z-06 19 3785146 3785146 G A MATK Intron 0.73 TCGA-DA-A95Z-06 19 38655399 38655399 C T SIPA1L3 Missense_Mutation p.S1354F 0.26 deleterious(0.03) benign(0.089) TCGA-DA-A95Z-06 19 38852399 38852399 G C CATSPERG Silent p.P664P 0.58 TCGA-DA-A95Z-06 19 38951057 38951057 C T RYR1 Silent p.F801F 0.15 TCGA-DA-A95Z-06 19 38983156 38983156 G A RYR1 Missense_Mutation p.E2052K 0.20 benign(0.246) TCGA-DA-A95Z-06 19 39575981 39575981 C T PAPL Silent p.S24S 0.20 TCGA-DA-A95Z-06 19 3984182 3984182 G A EEF2 Missense_Mutation p.T57I 0.15 deleterious(0.02) possibly_damaging(0.744) TCGA-DA-A95Z-06 19 39907573 39907573 C T PLEKHG2 Missense_Mutation p.S226L 0.23 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-DA-A95Z-06 19 39994879 39994879 G A DLL3 Missense_Mutation p.G274E 0.71 deleterious(0.01) possibly_damaging(0.619) TCGA-DA-A95Z-06 19 40581394 40581394 G T ZNF780A Missense_Mutation p.Q320K 0.63 tolerated(0.15) possibly_damaging(0.643) TCGA-DA-A95Z-06 19 40762841 40762841 G A AKT2 Missense_Mutation p.S56F 0.66 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 19 40901120 40901120 C T PRX Missense_Mutation p.G1047S 0.72 tolerated(0.19) probably_damaging(0.931) TCGA-DA-A95Z-06 19 40947739 40947739 G A SERTAD3 Silent p.F83F 0.17 TCGA-DA-A95Z-06 19 41066264 41066264 G A SPTBN4 Nonsense_Mutation p.W1957* 0.33 TCGA-DA-A95Z-06 19 41088297 41088297 C T SHKBP1 Silent p.F295F 0.20 TCGA-DA-A95Z-06 19 41442384 41442384 G A CYP2B7P RNA 0.71 TCGA-DA-A95Z-06 19 41594427 41594427 G A CYP2A13 Silent p.V17V 0.14 TCGA-DA-A95Z-06 19 41712267 41712267 G A CYP2S1 Silent p.L463L 0.21 TCGA-DA-A95Z-06 19 42471411 42471411 C T ATP1A3 Silent p.R1014R 0.24 TCGA-DA-A95Z-06 19 42474618 42474618 G A ATP1A3 Silent p.F793F 0.17 TCGA-DA-A95Z-06 19 42599763 42599763 C T POU2F2 Silent p.R296R 0.24 TCGA-DA-A95Z-06 19 42794646 42794646 C T CIC Missense_Mutation p.P576S 0.27 benign(0) TCGA-DA-A95Z-06 19 4290474 4290474 C T SHD Silent p.F289F 0.60 TCGA-DA-A95Z-06 19 43259371 43259371 C T PSG8 Missense_Mutation p.E253K 0.20 tolerated(0.26) probably_damaging(0.973) TCGA-DA-A95Z-06 19 43428845 43428845 C T PSG7 3'UTR 0.24 TCGA-DA-A95Z-06 19 43570738 43570738 C T PSG2 Missense_Mutation p.G327R 0.25 tolerated(0.08) benign(0.049) TCGA-DA-A95Z-06 19 43575877 43575877 G T PSG2 Silent p.S313S 0.16 TCGA-DA-A95Z-06 19 43922105 43922105 C T TEX101 Missense_Mutation p.P174L 0.62 deleterious(0.02) benign(0.052) TCGA-DA-A95Z-06 19 44571366 44571366 G T ZNF223 Missense_Mutation p.G462V 0.66 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 19 44833831 44833831 G T ZNF112 Missense_Mutation p.S166Y 0.70 tolerated(0.23) possibly_damaging(0.655) TCGA-DA-A95Z-06 19 44891368 44891368 C T ZNF285 Missense_Mutation p.D347N 0.27 tolerated(0.18) benign(0.036) TCGA-DA-A95Z-06 19 44891659 44891659 G A ZNF285 Missense_Mutation p.H250Y 0.16 deleterious(0.03) possibly_damaging(0.879) TCGA-DA-A95Z-06 19 4528970 4528970 T C PLIN5 Intron 0.17 TCGA-DA-A95Z-06 19 45515532 45515532 G A RELB Missense_Mutation p.E168K 0.33 tolerated(0.49) benign(0.1) TCGA-DA-A95Z-06 19 45895268 45895268 G A PPP1R13L Missense_Mutation p.P562L 0.78 tolerated(0.13) possibly_damaging(0.726) TCGA-DA-A95Z-06 19 45895269 45895269 G A PPP1R13L Missense_Mutation p.P562S 0.77 tolerated(0.16) possibly_damaging(0.641) TCGA-DA-A95Z-06 19 46094951 46094951 G T GPR4 Missense_Mutation p.N58K 0.22 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 19 46823813 46823813 G A HIF3A Missense_Mutation p.S380N 0.33 tolerated(0.17) benign(0.242) TCGA-DA-A95Z-06 19 46832484 46832484 G A HIF3A Silent p.L487L 0.72 TCGA-DA-A95Z-06 19 47124546 47124546 G A PTGIR Silent p.S384S 0.59 TCGA-DA-A95Z-06 19 47240137 47240137 G A STRN4 Missense_Mutation p.S161L 0.13 tolerated(0.39) benign(0.09) TCGA-DA-A95Z-06 19 47575131 47575131 T C ZC3H4 Missense_Mutation p.M684V 0.12 unknown(0) TCGA-DA-A95Z-06 19 47987205 47987205 G A KPTN Silent p.F71F 0.12 TCGA-DA-A95Z-06 19 48511907 48511907 G T ELSPBP1 Splice_Site 0.50 TCGA-DA-A95Z-06 19 49303235 49303235 C T BCAT2 Intron 0.21 TCGA-DA-A95Z-06 19 49575342 49575342 G A KCNA7 Silent p.D167D 0.83 TCGA-DA-A95Z-06 19 49684644 49684644 C T TRPM4 Silent p.L397L 0.60 TCGA-DA-A95Z-06 19 49843640 49843640 C T CD37 3'UTR 0.67 TCGA-DA-A95Z-06 19 49850522 49850522 G A TEAD2 Silent p.F282F 0.19 TCGA-DA-A95Z-06 19 49850554 49850554 T C TEAD2 Missense_Mutation p.S272G 0.67 deleterious(0.02) benign(0.202) TCGA-DA-A95Z-06 19 49850555 49850555 C T TEAD2 Silent p.E271E 0.66 TCGA-DA-A95Z-06 19 498635 498635 G A MADCAM1 Silent p.E159E 0.67 TCGA-DA-A95Z-06 19 50212004 50212004 C T CPT1C Nonsense_Mutation p.Q492* 0.17 TCGA-DA-A95Z-06 19 50216865 50216865 C T CPT1C 3'UTR 0.58 TCGA-DA-A95Z-06 19 50473633 50473633 C T SIGLEC16 RNA 0.26 TCGA-DA-A95Z-06 19 50812277 50812277 C T MYH14 Missense_Mutation p.L1935F 0.32 tolerated(0.2) possibly_damaging(0.755) TCGA-DA-A95Z-06 19 50881055 50881055 C T NR1H2 Missense_Mutation p.P37S 0.71 tolerated(0.3) unknown(0) TCGA-DA-A95Z-06 19 51017863 51017863 G A ASPDH 5'Flank 0.32 TCGA-DA-A95Z-06 19 51452290 51452290 G A KLK5 Silent p.S139S 0.23 TCGA-DA-A95Z-06 19 51656612 51656612 C T SIGLEC7 3'UTR 0.30 TCGA-DA-A95Z-06 19 51671383 51671383 C T CTD-3187F8.14 Intron 0.23 TCGA-DA-A95Z-06 19 51875635 51875635 G A NKG7 Missense_Mutation p.S52L 0.24 tolerated(0.13) benign(0.025) TCGA-DA-A95Z-06 19 52249116 52249116 G A FPR1 3'UTR 0.28 TCGA-DA-A95Z-06 19 52714514 52714538 CACCGCTGGAGTCGCTGGCCACAGT - PPP2R1A Frame_Shift_Del p.P91Rfs*33 0.60 TCGA-DA-A95Z-06 19 53473680 53473680 G A ZNF702P RNA 0.71 TCGA-DA-A95Z-06 19 53667611 53667611 G A ZNF665 3'Flank 0.83 TCGA-DA-A95Z-06 19 53741153 53741153 G A ZNF677 Missense_Mutation p.S276L 0.22 tolerated(0.06) benign(0.008) TCGA-DA-A95Z-06 19 53912429 53912429 T C ZNF765 3'UTR 0.14 TCGA-DA-A95Z-06 19 53960307 53960307 C T ZNF761 RNA 0.21 TCGA-DA-A95Z-06 19 54080203 54080203 C T ZNF331 Missense_Mutation p.S130F 0.23 tolerated(0.15) benign(0.365) TCGA-DA-A95Z-06 19 54080393 54080393 G A ZNF331 Silent p.G193G 0.17 TCGA-DA-A95Z-06 19 54255674 54255674 G A MIR519A1 RNA 0.60 TCGA-DA-A95Z-06 19 54621802 54621802 C T PRPF31 Silent p.V48V 0.28 TCGA-DA-A95Z-06 19 54818772 54818772 G A LILRA5 Silent p.L276L 0.25 TCGA-DA-A95Z-06 19 54932490 54932490 C T TTYH1 Silent p.T115T 0.13 TCGA-DA-A95Z-06 19 55019333 55019333 C T LAIR2 Missense_Mutation p.R100C 0.63 tolerated(0.06) benign(0.132) TCGA-DA-A95Z-06 19 55106398 55106398 C T LILRA1 Silent p.P113P 0.22 TCGA-DA-A95Z-06 19 55378367 55378367 C T KIR3DL2 3'UTR 0.68 TCGA-DA-A95Z-06 19 55539086 55539086 G A GP6 Missense_Mutation p.P157L 0.22 deleterious_low_confidence(0.03) benign(0.034) TCGA-DA-A95Z-06 19 55649443 55649443 C T TNNT1 Splice_Site p.X130_splice 0.32 TCGA-DA-A95Z-06 19 55672065 55672065 C T DNAAF3 Missense_Mutation p.G399R 0.70 tolerated(0.58) benign(0.002) TCGA-DA-A95Z-06 19 55672710 55672710 G T DNAAF3 Missense_Mutation p.A315D 0.35 deleterious(0.01) possibly_damaging(0.887) TCGA-DA-A95Z-06 19 55708627 55708627 C T PTPRH Silent p.A616A 0.71 TCGA-DA-A95Z-06 19 55832339 55832339 G A TMEM150B Silent p.I22I 0.69 TCGA-DA-A95Z-06 19 56180939 56180939 G A U2AF2 Missense_Mutation p.D392N 0.17 tolerated(0.16) benign(0.444) TCGA-DA-A95Z-06 19 56321483 56321483 G A NLRP11 Silent p.L165L 0.54 TCGA-DA-A95Z-06 19 56370290 56370290 G A NLRP4 Missense_Mutation p.E511K 0.66 deleterious(0.01) possibly_damaging(0.542) TCGA-DA-A95Z-06 19 56372842 56372842 C T NLRP4 Silent p.T649T 0.18 TCGA-DA-A95Z-06 19 56421961 56421961 C T NLRP13 Silent p.L750L 0.18 TCGA-DA-A95Z-06 19 56688513 56688513 C T GALP Silent p.L12L 0.59 TCGA-DA-A95Z-06 19 57176430 57176430 G A ZNF835 Missense_Mutation p.P46L 0.23 tolerated(0.12) benign(0.023) TCGA-DA-A95Z-06 19 57327523 57327523 G A PEG3 Missense_Mutation p.P763S 0.20 tolerated(0.3) benign(0.049) TCGA-DA-A95Z-06 19 57335030 57335030 C T PEG3 Missense_Mutation p.V138M 0.18 tolerated(0.59) benign(0.002) TCGA-DA-A95Z-06 19 57666668 57666668 C T DUXA Missense_Mutation p.E171K 0.65 tolerated(0.3) benign(0) TCGA-DA-A95Z-06 19 58004332 58004332 C T ZNF419 Missense_Mutation p.P137L 0.18 tolerated(0.34) benign(0.002) TCGA-DA-A95Z-06 19 58370372 58370372 G C ZNF587 Missense_Mutation p.E198Q 0.14 tolerated(0.59) benign(0.403) TCGA-DA-A95Z-06 19 58445196 58445196 C T ZNF418 5'UTR 0.22 TCGA-DA-A95Z-06 19 58512662 58512662 G A ZNF606 Missense_Mutation p.S9F 0.23 deleterious_low_confidence(0) benign(0) TCGA-DA-A95Z-06 19 5867178 5867178 G A FUT5 Missense_Mutation p.P187S 0.72 tolerated(0.11) probably_damaging(0.931) TCGA-DA-A95Z-06 19 5867567 5867567 C T FUT5 Missense_Mutation p.G57E 0.27 tolerated(1) benign(0.007) TCGA-DA-A95Z-06 19 58965615 58965615 C T ZNF324B Missense_Mutation p.R48C 0.61 tolerated(0.22) benign(0.001) TCGA-DA-A95Z-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.24 TCGA-DA-A95Z-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.24 deleterious(0) possibly_damaging(0.891) TCGA-DA-A95Z-06 19 59068104 59068104 G A UBE2M Silent p.V99V 0.17 TCGA-DA-A95Z-06 19 6472932 6472932 G A DENND1C Missense_Mutation p.R376W 0.62 deleterious(0) possibly_damaging(0.849) TCGA-DA-A95Z-06 19 6924748 6924748 C T EMR1 Silent p.L617L 0.68 TCGA-DA-A95Z-06 19 758081 758081 G A MISP Missense_Mutation p.D379N 0.63 tolerated(0.17) benign(0.205) TCGA-DA-A95Z-06 19 7692320 7692320 G A XAB2 Missense_Mutation p.R111C 0.72 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 19 7812246 7812246 C T CD209 Missense_Mutation p.E18K 0.69 deleterious(0.02) benign(0.141) TCGA-DA-A95Z-06 19 8152712 8152712 G A FBN3 Nonsense_Mutation p.R2206* 0.21 TCGA-DA-A95Z-06 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-DA-A95Z-06 19 8550516 8550516 G A HNRNPM Missense_Mutation p.E402K 0.23 tolerated(0.14) benign(0.191) TCGA-DA-A95Z-06 19 855771 855771 G A ELANE Missense_Mutation p.G192S 0.63 tolerated(0.48) benign(0.006) TCGA-DA-A95Z-06 19 8987242 8987242 A G MUC16 Missense_Mutation p.F13949L 0.21 probably_damaging(0.999) TCGA-DA-A95Z-06 19 8999435 8999435 C T MUC16 Silent p.E13580E 0.39 TCGA-DA-A95Z-06 19 9058746 9058746 G A MUC16 Missense_Mutation p.S9567F 0.61 unknown(0) TCGA-DA-A95Z-06 19 9068118 9068118 C T MUC16 Missense_Mutation p.R6443K 0.61 unknown(0) TCGA-DA-A95Z-06 19 9076887 9076887 G A MUC16 Missense_Mutation p.S3520L 0.68 unknown(0) TCGA-DA-A95Z-06 19 9077275 9077275 C T MUC16 Missense_Mutation p.E3391K 0.23 unknown(0) TCGA-DA-A95Z-06 19 9226257 9226257 G A OR7G1 Silent p.F61F 0.24 TCGA-DA-A95Z-06 19 9492525 9492525 C T ZNF177 3'UTR 0.27 TCGA-DA-A95Z-06 19 9677501 9677501 G A ZNF121 Silent p.A96A 0.22 TCGA-DA-A95Z-06 19 9720917 9720917 C G ZNF561 Missense_Mutation p.E474Q 0.65 tolerated(0.07) benign(0.021) TCGA-DA-A95Z-06 19 9868699 9868699 A G ZNF846 Missense_Mutation p.Y352H 0.33 tolerated(0.54) benign(0.007) TCGA-DA-A95Z-06 1 100353661 100353661 C G AGL Missense_Mutation p.Q937E 0.36 deleterious(0) probably_damaging(0.936) TCGA-DA-A95Z-06 1 100382203 100382203 C T AGL Missense_Mutation p.S1466F 0.25 deleterious(0) possibly_damaging(0.608) TCGA-DA-A95Z-06 1 10471501 10471501 C T PGD Silent p.F182F 0.39 TCGA-DA-A95Z-06 1 10720052 10720052 G A CASZ1 Silent p.L349L 0.58 TCGA-DA-A95Z-06 1 10720428 10720428 G A CASZ1 Missense_Mutation p.P224L 0.25 tolerated_low_confidence(0.07) benign(0.013) TCGA-DA-A95Z-06 1 109373254 109373254 G A AKNAD1 Missense_Mutation p.P589S 0.62 tolerated(1) benign(0) TCGA-DA-A95Z-06 1 109743463 109743463 G A KIAA1324 Missense_Mutation p.D972N 0.52 deleterious(0) probably_damaging(0.927) TCGA-DA-A95Z-06 1 109957910 109957910 G A PSMA5 Silent p.L58L 0.43 TCGA-DA-A95Z-06 1 110255617 110255617 G A GSTM5 Intron 0.65 TCGA-DA-A95Z-06 1 110884473 110884473 C T RBM15 Missense_Mutation p.L816F 0.60 deleterious(0) possibly_damaging(0.536) TCGA-DA-A95Z-06 1 1117796 1117796 G A TTLL10 Missense_Mutation p.E296K 0.57 deleterious(0) possibly_damaging(0.895) TCGA-DA-A95Z-06 1 111985355 111985355 C T WDR77 Silent p.V240V 0.59 TCGA-DA-A95Z-06 1 114443017 114443017 G A AP4B1 Missense_Mutation p.S208L 0.24 tolerated(0.22) benign(0.01) TCGA-DA-A95Z-06 1 115251256 115251257 - A NRAS Frame_Shift_Ins p.Y157Lfs*19 0.31 TCGA-DA-A95Z-06 1 115417165 115417165 G A SYCP1 Missense_Mutation p.D213N 0.58 deleterious(0.03) probably_damaging(0.957) TCGA-DA-A95Z-06 1 11561574 11561574 C T PTCHD2 Silent p.I175I 0.55 TCGA-DA-A95Z-06 1 11709930 11709930 A T FBXO2 Missense_Mutation p.W175R 0.23 tolerated(0.25) possibly_damaging(0.805) TCGA-DA-A95Z-06 1 117311185 117311185 C T CD2 Missense_Mutation p.S279F 0.50 deleterious(0.01) possibly_damaging(0.892) TCGA-DA-A95Z-06 1 11734825 11734825 T A MAD2L2 3'UTR 0.59 TCGA-DA-A95Z-06 1 117503988 117503988 C T PTGFRN Missense_Mutation p.S446L 0.67 deleterious(0) possibly_damaging(0.756) TCGA-DA-A95Z-06 1 11887247 11887247 C T CLCN6 Missense_Mutation p.S270F 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 11887248 11887248 C T CLCN6 Silent p.S270S 0.29 TCGA-DA-A95Z-06 1 1192380 1192380 C T UBE2J2 Missense_Mutation p.D152N 0.23 tolerated(0.15) benign(0.141) TCGA-DA-A95Z-06 1 1192381 1192381 C T UBE2J2 Silent p.S151S 0.23 TCGA-DA-A95Z-06 1 119964966 119964966 C T HSD3B2 Missense_Mutation p.S281F 0.64 deleterious(0) probably_damaging(0.917) TCGA-DA-A95Z-06 1 12835790 12835790 G A PRAMEF12 Missense_Mutation p.R131Q 0.24 tolerated(0.58) benign(0) TCGA-DA-A95Z-06 1 12854616 12854616 C T PRAMEF1 Silent p.F280F 0.29 TCGA-DA-A95Z-06 1 12942042 12942042 G A PRAMEF4 Missense_Mutation p.L170F 0.51 tolerated(0.54) benign(0.034) TCGA-DA-A95Z-06 1 12979829 12979829 G A PRAMEF7 Missense_Mutation p.G341S 0.13 benign(0.088) TCGA-DA-A95Z-06 1 144880760 144880760 C T PDE4DIP Missense_Mutation p.E1290K 0.32 deleterious(0) possibly_damaging(0.874) TCGA-DA-A95Z-06 1 145415659 145415659 C T HFE2 Missense_Mutation p.R160C 0.55 deleterious(0.03) probably_damaging(0.912) TCGA-DA-A95Z-06 1 145560099 145560099 G A ANKRD35 Silent p.E195E 0.63 TCGA-DA-A95Z-06 1 146743917 146743917 C T CHD1L Silent p.F415F 0.25 TCGA-DA-A95Z-06 1 147231332 147231332 G A GJA5 Silent p.S5S 0.49 TCGA-DA-A95Z-06 1 147955206 147955206 G A PPIAL4A Missense_Mutation p.R47C 0.55 deleterious_low_confidence(0.02) benign(0) TCGA-DA-A95Z-06 1 149939422 149939422 G A OTUD7B Missense_Mutation p.S100F 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 1 150310723 150310723 C T PRPF3 Missense_Mutation p.P375S 0.28 deleterious(0.01) probably_damaging(0.949) TCGA-DA-A95Z-06 1 150444374 150444374 C T RPRD2 Missense_Mutation p.P984S 0.24 tolerated_low_confidence(0.09) benign(0.017) TCGA-DA-A95Z-06 1 150445749 150445749 C T RPRD2 Missense_Mutation p.P1442L 0.55 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Z-06 1 151023051 151023051 G A C1orf56 3'UTR 0.69 TCGA-DA-A95Z-06 1 151023052 151023052 G A C1orf56 3'UTR 0.67 TCGA-DA-A95Z-06 1 151065857 151065857 C T GABPB2 Missense_Mutation p.L156F 0.64 deleterious(0) probably_damaging(0.985) TCGA-DA-A95Z-06 1 151110875 151110875 G A SEMA6C Missense_Mutation p.S155L 0.67 deleterious(0) possibly_damaging(0.519) TCGA-DA-A95Z-06 1 151337122 151337122 T A SELENBP1 Missense_Mutation p.N439I 0.61 deleterious(0) possibly_damaging(0.902) TCGA-DA-A95Z-06 1 151554273 151554273 C T TUFT1 3'UTR 0.40 TCGA-DA-A95Z-06 1 152084687 152084687 C T TCHH Missense_Mutation p.E336K 0.21 unknown(0) TCGA-DA-A95Z-06 1 152128697 152128697 G A RPTN Missense_Mutation p.S293F 0.55 tolerated(0.09) benign(0.033) TCGA-DA-A95Z-06 1 152276429 152276429 C G FLG Missense_Mutation p.G3645R 0.12 unknown(0) TCGA-DA-A95Z-06 1 152277357 152277357 G A FLG Silent p.S3335S 0.17 TCGA-DA-A95Z-06 1 152277594 152277594 G A FLG Silent p.S3256S 0.16 TCGA-DA-A95Z-06 1 152279003 152279003 G A FLG Missense_Mutation p.R2787C 0.06 benign(0.035) TCGA-DA-A95Z-06 1 152280947 152280947 G A FLG Missense_Mutation p.R2139C 0.23 possibly_damaging(0.689) TCGA-DA-A95Z-06 1 152282971 152282971 C T FLG Missense_Mutation p.G1464E 0.17 probably_damaging(0.931) TCGA-DA-A95Z-06 1 152286031 152286031 C T FLG Missense_Mutation p.G444E 0.34 possibly_damaging(0.573) TCGA-DA-A95Z-06 1 152286128 152286128 G A FLG Missense_Mutation p.R412C 0.36 probably_damaging(0.976) TCGA-DA-A95Z-06 1 152328541 152328541 G A FLG2 Missense_Mutation p.S574L 0.15 unknown(0) TCGA-DA-A95Z-06 1 152785322 152785322 C T LCE1B 3'UTR 0.42 TCGA-DA-A95Z-06 1 152884104 152884104 C T IVL 3'UTR 0.38 TCGA-DA-A95Z-06 1 152944653 152944653 G A SPRR4 3'UTR 0.27 TCGA-DA-A95Z-06 1 153043275 153043275 G A SPRR2B Missense_Mutation p.P14L 0.28 tolerated_low_confidence(0.7) unknown(0) TCGA-DA-A95Z-06 1 153043276 153043276 G A SPRR2B Missense_Mutation p.P14S 0.28 tolerated_low_confidence(0.68) unknown(0) TCGA-DA-A95Z-06 1 153066187 153066187 G A SPRR2E Missense_Mutation p.P14L 0.06 tolerated_low_confidence(0.75) unknown(0) TCGA-DA-A95Z-06 1 153066188 153066188 G A SPRR2E Missense_Mutation p.P14S 0.06 tolerated_low_confidence(0.83) unknown(0) TCGA-DA-A95Z-06 1 153084933 153084933 G A SPRR2F 3'UTR 0.34 TCGA-DA-A95Z-06 1 153661936 153661936 C T NPR1 Missense_Mutation p.T899I 0.28 deleterious(0.01) probably_damaging(0.956) TCGA-DA-A95Z-06 1 154076631 154076631 T C NUP210L Missense_Mutation p.E559G 0.35 deleterious(0.01) possibly_damaging(0.493) TCGA-DA-A95Z-06 1 154226542 154226542 C T UBAP2L Nonsense_Mutation p.Q611* 0.38 TCGA-DA-A95Z-06 1 154294504 154294504 G A AQP10 Silent p.T67T 0.47 TCGA-DA-A95Z-06 1 154458462 154458462 G A SHE Nonsense_Mutation p.R420* 0.35 TCGA-DA-A95Z-06 1 154543818 154543818 C T CHRNB2 Silent p.F173F 0.52 TCGA-DA-A95Z-06 1 154575071 154575071 G A ADAR Missense_Mutation p.P16L 0.15 deleterious_low_confidence(0.01) benign(0.004) TCGA-DA-A95Z-06 1 155161936 155161936 G A MUC1 Missense_Mutation p.P66L 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-DA-A95Z-06 1 155448028 155448028 G A ASH1L Missense_Mutation p.P1545S 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.899) TCGA-DA-A95Z-06 1 155450714 155450714 G A ASH1L Silent p.S649S 0.30 TCGA-DA-A95Z-06 1 155450715 155450715 G A ASH1L Missense_Mutation p.S649F 0.30 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-DA-A95Z-06 1 155784154 155784154 A T GON4L Silent p.T416T 0.56 TCGA-DA-A95Z-06 1 156018367 156018367 G A UBQLN4 Silent p.I275I 0.09 TCGA-DA-A95Z-06 1 156376803 156376803 C T C1orf61 Intron 0.16 TCGA-DA-A95Z-06 1 156533102 156533102 G A IQGAP3 Missense_Mutation p.H208Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 1 156812030 156812030 C T INSRR Missense_Mutation p.E1091K 0.32 tolerated(0.72) benign(0.004) TCGA-DA-A95Z-06 1 157773735 157773735 G A FCRL1 Silent p.I73I 0.33 TCGA-DA-A95Z-06 1 157804408 157804408 G C CD5L Silent p.L169L 0.33 TCGA-DA-A95Z-06 1 1580551 1580551 C T CDK11B Silent p.R192R 0.17 TCGA-DA-A95Z-06 1 158057845 158057845 G T KIRREL Nonsense_Mutation p.E273* 0.38 TCGA-DA-A95Z-06 1 158225013 158225013 C A CD1A Missense_Mutation p.F66L 0.35 deleterious(0.01) benign(0.423) TCGA-DA-A95Z-06 1 158260990 158260990 G A CD1C Missense_Mutation p.R43Q 0.41 tolerated(1) benign(0) TCGA-DA-A95Z-06 1 158299316 158299316 C A CD1B Nonsense_Mutation p.E244* 0.12 TCGA-DA-A95Z-06 1 158326542 158326542 C T CD1E Silent p.P341P 0.52 TCGA-DA-A95Z-06 1 158435894 158435894 C T OR10K1 Silent p.I181I 0.20 TCGA-DA-A95Z-06 1 158450144 158450144 G A OR10R2 Silent p.Q159Q 0.18 TCGA-DA-A95Z-06 1 158517110 158517110 G A OR6Y1 Silent p.F262F 0.19 TCGA-DA-A95Z-06 1 158517710 158517710 C T OR6Y1 Silent p.K62K 0.17 TCGA-DA-A95Z-06 1 158517829 158517829 G A OR6Y1 Missense_Mutation p.P23S 0.47 tolerated(0.3) benign(0.021) TCGA-DA-A95Z-06 1 158548822 158548822 G A OR10X1 Missense_Mutation p.P290S 0.32 tolerated(0.23) probably_damaging(0.954) TCGA-DA-A95Z-06 1 158548925 158548925 G A OR10X1 Silent p.T255T 0.19 TCGA-DA-A95Z-06 1 158576419 158576419 C T OR10Z1 Missense_Mutation p.S64F 0.21 tolerated(0.28) possibly_damaging(0.534) TCGA-DA-A95Z-06 1 158576585 158576585 C T OR10Z1 Silent p.G119G 0.41 TCGA-DA-A95Z-06 1 158576864 158576864 C T OR10Z1 Silent p.F212F 0.39 TCGA-DA-A95Z-06 1 158577166 158577166 G A OR10Z1 Missense_Mutation p.G313E 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Z-06 1 158590242 158590242 G A SPTA1 Silent p.F2045F 0.25 TCGA-DA-A95Z-06 1 158592952 158592952 G A SPTA1 Nonsense_Mutation p.Q1981* 0.18 TCGA-DA-A95Z-06 1 158596004 158596004 C T SPTA1 Missense_Mutation p.E1948K 0.34 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 1 158607893 158607893 C T SPTA1 Missense_Mutation p.E1707K 0.38 tolerated(0.68) benign(0.06) TCGA-DA-A95Z-06 1 158670151 158670151 G T OR6K2 Missense_Mutation p.L98M 0.19 deleterious(0.05) possibly_damaging(0.601) TCGA-DA-A95Z-06 1 158725260 158725260 G A OR6K6 Missense_Mutation p.D219N 0.33 deleterious(0.02) possibly_damaging(0.768) TCGA-DA-A95Z-06 1 158914717 158914717 C G PYHIN1 Missense_Mutation p.P415R 0.14 deleterious(0.02) possibly_damaging(0.708) TCGA-DA-A95Z-06 1 159035884 159035884 C T AIM2 Missense_Mutation p.R211K 0.39 tolerated(0.56) benign(0.002) TCGA-DA-A95Z-06 1 159409574 159409574 A G OR10J1 Missense_Mutation p.N9S 0.13 tolerated(0.8) benign(0) TCGA-DA-A95Z-06 1 159409656 159409656 C T OR10J1 Silent p.I36I 0.38 TCGA-DA-A95Z-06 1 159410425 159410425 C T OR10J1 Missense_Mutation p.P293S 0.52 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Z-06 1 159802878 159802878 G A SLAMF8 Missense_Mutation p.D194N 0.42 tolerated(0.16) probably_damaging(0.982) TCGA-DA-A95Z-06 1 159846436 159846436 C T CCDC19 Missense_Mutation p.R421Q 0.27 tolerated(0.08) benign(0.312) TCGA-DA-A95Z-06 1 160171053 160171053 G A CASQ1 Missense_Mutation p.E360K 0.24 deleterious(0.04) benign(0.029) TCGA-DA-A95Z-06 1 160456353 160456353 C T SLAMF6 3'UTR 0.33 TCGA-DA-A95Z-06 1 16060300 16060300 C T PLEKHM2 Silent p.L977L 0.18 TCGA-DA-A95Z-06 1 160651121 160651121 C T CD48 Missense_Mutation p.E175K 0.37 tolerated(0.26) benign(0.248) TCGA-DA-A95Z-06 1 160914898 160914898 G A ITLN2 3'UTR 0.17 TCGA-DA-A95Z-06 1 161953713 161953713 G A OLFML2B Missense_Mutation p.R669W 0.21 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 161953714 161953714 G A OLFML2B Silent p.L668L 0.21 TCGA-DA-A95Z-06 1 162344230 162344230 C T C1orf111 Missense_Mutation p.E132K 0.40 deleterious(0.03) possibly_damaging(0.779) TCGA-DA-A95Z-06 1 16381995 16381995 C T CLCNKB Missense_Mutation p.P608S 0.50 tolerated(0.41) benign(0) TCGA-DA-A95Z-06 1 16390084 16390084 C T FAM131C Missense_Mutation p.D24N 0.62 tolerated_low_confidence(0.32) benign(0.009) TCGA-DA-A95Z-06 1 165218847 165218847 G A LMX1A Silent p.F98F 0.47 TCGA-DA-A95Z-06 1 165324800 165324800 C T LMX1A 5'UTR 0.35 TCGA-DA-A95Z-06 1 167096317 167096317 G A DUSP27 Missense_Mutation p.S650N 0.18 deleterious(0) possibly_damaging(0.632) TCGA-DA-A95Z-06 1 167384959 167384959 C T POU2F1 Missense_Mutation p.S738F 0.42 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DA-A95Z-06 1 167793989 167793989 G A ADCY10 Silent p.L1285L 0.32 TCGA-DA-A95Z-06 1 167794048 167794048 C T ADCY10 Missense_Mutation p.G1266S 0.31 deleterious(0.02) benign(0.178) TCGA-DA-A95Z-06 1 167814967 167814967 T A ADCY10 Missense_Mutation p.K947N 0.42 tolerated(0.19) possibly_damaging(0.548) TCGA-DA-A95Z-06 1 167868780 167868780 C T ADCY10 Missense_Mutation p.V175M 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 16802935 16802935 G A CROCCP3 RNA 0.44 TCGA-DA-A95Z-06 1 168260396 168260396 A T TBX19 Splice_Site p.X68_splice 0.40 TCGA-DA-A95Z-06 1 169390610 169390610 C T CCDC181 Silent p.L353L 0.31 TCGA-DA-A95Z-06 1 169519975 169519975 G A F5 Silent p.I433I 0.25 TCGA-DA-A95Z-06 1 169695899 169695899 C A SELE Missense_Mutation p.G565V 0.18 deleterious(0.01) possibly_damaging(0.491) TCGA-DA-A95Z-06 1 17029388 17029388 C T ESPNP RNA 0.12 TCGA-DA-A95Z-06 1 172411028 172411028 G A PIGC Silent p.S245S 0.15 TCGA-DA-A95Z-06 1 172411029 172411029 G A PIGC Missense_Mutation p.S245F 0.16 deleterious(0.01) possibly_damaging(0.784) TCGA-DA-A95Z-06 1 172437725 172437725 G A C1orf105 Silent p.T181T 0.42 TCGA-DA-A95Z-06 1 172501872 172501872 G A SUCO 5'Flank 0.12 TCGA-DA-A95Z-06 1 172546684 172546684 C T SUCO Silent p.F423F 0.62 TCGA-DA-A95Z-06 1 17296909 17296909 G A CROCC Silent p.L1871L 0.75 TCGA-DA-A95Z-06 1 173502835 173502835 C T SLC9C2 Silent p.V692V 0.25 TCGA-DA-A95Z-06 1 17397933 17397933 C T PADI2 Missense_Mutation p.E535K 0.23 tolerated(0.56) benign(0.086) TCGA-DA-A95Z-06 1 174190246 174190246 C T RABGAP1L Missense_Mutation p.P92L 0.25 tolerated(0.11) benign(0.001) TCGA-DA-A95Z-06 1 175336387 175336387 C T TNR Missense_Mutation p.M670I 0.17 tolerated(0.11) benign(0.01) TCGA-DA-A95Z-06 1 17601198 17601198 G A PADI3 Silent p.G408G 0.34 TCGA-DA-A95Z-06 1 176564298 176564298 C T PAPPA2 Missense_Mutation p.R520W 0.46 deleterious(0.02) probably_damaging(0.912) TCGA-DA-A95Z-06 1 176640163 176640163 C T PAPPA2 Silent p.F683F 0.14 TCGA-DA-A95Z-06 1 176668258 176668258 C T PAPPA2 Silent p.P923P 0.49 TCGA-DA-A95Z-06 1 176863825 176863825 C T ASTN1 Missense_Mutation p.R938Q 0.20 tolerated(0.23) benign(0.025) TCGA-DA-A95Z-06 1 176926843 176926843 C T ASTN1 Missense_Mutation p.D620N 0.24 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 1 17722083 17722083 C T PADI6 RNA 0.38 TCGA-DA-A95Z-06 1 17722084 17722084 C T PADI6 RNA 0.36 TCGA-DA-A95Z-06 1 177225165 177225165 G A BRINP2 Missense_Mutation p.R127K 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A95Z-06 1 17735562 17735562 G A RCC2 3'UTR 0.26 TCGA-DA-A95Z-06 1 177906373 177906373 T A SEC16B Missense_Mutation p.M827L 0.20 tolerated(0.71) benign(0.005) TCGA-DA-A95Z-06 1 178490047 178490047 G A TEX35 Intron 0.38 TCGA-DA-A95Z-06 1 178490398 178490398 G A TEX35 Silent p.R195R 0.21 TCGA-DA-A95Z-06 1 179077246 179077246 G A ABL2 Silent p.S1052S 0.23 TCGA-DA-A95Z-06 1 179604981 179604981 G A TDRD5 Silent p.R493R 0.15 TCGA-DA-A95Z-06 1 180843063 180843063 C T XPR1 Missense_Mutation p.P598L 0.20 tolerated(0.07) possibly_damaging(0.627) TCGA-DA-A95Z-06 1 181767826 181767826 C T CACNA1E Silent p.I2266I 0.35 TCGA-DA-A95Z-06 1 183261930 183261930 C T NMNAT2 Nonsense_Mutation p.W79* 0.41 TCGA-DA-A95Z-06 1 183534893 183534893 C T NCF2 Missense_Mutation p.D316N 0.16 tolerated(0.24) benign(0.011) TCGA-DA-A95Z-06 1 184853882 184853882 G A FAM129A Silent p.F162F 0.13 TCGA-DA-A95Z-06 1 185891615 185891615 C T HMCN1 Silent p.V335V 0.18 TCGA-DA-A95Z-06 1 186276699 186276699 T C PRG4 Silent p.T616T 0.19 TCGA-DA-A95Z-06 1 186276844 186276844 G A PRG4 Missense_Mutation p.A665T 0.11 unknown(0) TCGA-DA-A95Z-06 1 186276846 186276846 T A PRG4 Silent p.A665A 0.11 TCGA-DA-A95Z-06 1 18691791 18691791 C T IGSF21 Silent p.P205P 0.49 TCGA-DA-A95Z-06 1 18808836 18808838 CCT TC KLHDC7A Frame_Shift_Del p.A454Vfs*4 0.28 TCGA-DA-A95Z-06 1 18808919 18808919 C T KLHDC7A Silent p.L482L 0.54 TCGA-DA-A95Z-06 1 18958167 18958167 G A PAX7 Missense_Mutation p.G24R 0.50 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DA-A95Z-06 1 19430721 19430721 G A UBR4 Missense_Mutation p.S4253F 0.56 probably_damaging(0.962) TCGA-DA-A95Z-06 1 196250119 196250119 C T KCNT2 Splice_Site p.X928_splice 0.20 TCGA-DA-A95Z-06 1 196309642 196309642 G A KCNT2 Missense_Mutation p.P538S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 1 196965319 196965319 C T CFHR5 Missense_Mutation p.P320S 0.25 deleterious(0) probably_damaging(0.971) TCGA-DA-A95Z-06 1 196971734 196971734 C T CFHR5 Missense_Mutation p.P424S 0.27 tolerated(0.32) benign(0.009) TCGA-DA-A95Z-06 1 200017685 200017685 C T NR5A2 Silent p.S283S 0.46 TCGA-DA-A95Z-06 1 200730115 200730115 C A CAMSAP2 Silent p.P96P 0.31 TCGA-DA-A95Z-06 1 200730116 200730116 C T CAMSAP2 Missense_Mutation p.L97F 0.30 deleterious(0.05) probably_damaging(0.976) TCGA-DA-A95Z-06 1 200943207 200943207 G A KIF21B 3'UTR 0.22 TCGA-DA-A95Z-06 1 201191880 201191880 C T IGFN1 Silent p.F3405F 0.19 TCGA-DA-A95Z-06 1 201355545 201355545 C T LAD1 Missense_Mutation p.G315E 0.17 tolerated(1) benign(0.002) TCGA-DA-A95Z-06 1 201355546 201355546 C T LAD1 Missense_Mutation p.G315R 0.17 tolerated(0.42) benign(0.004) TCGA-DA-A95Z-06 1 201355852 201355852 A T LAD1 Missense_Mutation p.S213T 0.23 tolerated(0.07) possibly_damaging(0.465) TCGA-DA-A95Z-06 1 201437508 201437508 G A PHLDA3 3'UTR 0.26 TCGA-DA-A95Z-06 1 201958130 201958130 C T RNPEP Silent p.F182F 0.20 TCGA-DA-A95Z-06 1 202276485 202276485 C T LGR6 Silent p.S412S 0.19 TCGA-DA-A95Z-06 1 202287272 202287272 C T LGR6 Missense_Mutation p.S614F 0.64 tolerated(0.63) possibly_damaging(0.703) TCGA-DA-A95Z-06 1 20302190 20302190 G A PLA2G2A 3'UTR 0.17 TCGA-DA-A95Z-06 1 203316928 203316928 C T FMOD Silent p.L157L 0.26 TCGA-DA-A95Z-06 1 204131158 204131158 G T REN Missense_Mutation p.L78I 0.31 deleterious(0) probably_damaging(0.989) TCGA-DA-A95Z-06 1 205687449 205687449 C T NUCKS1 Missense_Mutation p.D231N 0.24 tolerated(0.09) benign(0.004) TCGA-DA-A95Z-06 1 206317625 206317625 G A CTSE Missense_Mutation p.A17T 0.66 tolerated(0.19) benign(0.006) TCGA-DA-A95Z-06 1 206325289 206325289 C T CTSE Missense_Mutation p.P172S 0.44 deleterious(0.03) probably_damaging(1) TCGA-DA-A95Z-06 1 206623774 206623774 C T SRGAP2 Nonsense_Mutation p.Q629* 0.48 TCGA-DA-A95Z-06 1 206905486 206905486 C T MAPKAPK2 Intron 0.65 TCGA-DA-A95Z-06 1 207143478 207143478 C A FCAMR 5'UTR 0.20 TCGA-DA-A95Z-06 1 207198389 207198389 G A C1orf116 Silent p.F42F 0.38 TCGA-DA-A95Z-06 1 208216492 208216492 C T PLXNA2 Missense_Mutation p.G1311R 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A95Z-06 1 209964204 209964204 G A IRF6 Silent p.Y232Y 0.43 TCGA-DA-A95Z-06 1 211847012 211847012 G A NEK2 Missense_Mutation p.A123V 0.61 deleterious(0.02) probably_damaging(0.988) TCGA-DA-A95Z-06 1 213037071 213037071 G T FLVCR1 Missense_Mutation p.G248V 0.19 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 214171337 214171337 C T PROX1 Missense_Mutation p.P487S 0.44 tolerated(0.45) benign(0.284) TCGA-DA-A95Z-06 1 214171338 214171338 C T PROX1 Missense_Mutation p.P487L 0.45 tolerated(0.23) probably_damaging(0.939) TCGA-DA-A95Z-06 1 214557999 214557999 G A PTPN14 Missense_Mutation p.S400L 0.48 deleterious(0.04) possibly_damaging(0.527) TCGA-DA-A95Z-06 1 215847839 215847839 C T USH2A Missense_Mutation p.G4472S 0.18 probably_damaging(1) TCGA-DA-A95Z-06 1 216108121 216108121 G A USH2A Silent p.T2379T 0.16 TCGA-DA-A95Z-06 1 216108122 216108122 G A USH2A Missense_Mutation p.T2379I 0.16 benign(0.14) TCGA-DA-A95Z-06 1 216246510 216246510 C T USH2A Missense_Mutation p.G1902E 0.29 benign(0.272) TCGA-DA-A95Z-06 1 216260071 216260071 C T USH2A Silent p.R1659R 0.15 TCGA-DA-A95Z-06 1 220152049 220152049 G A EPRS Missense_Mutation p.P1308S 0.23 deleterious(0) probably_damaging(0.991) TCGA-DA-A95Z-06 1 220870064 220870064 C T C1orf115 Silent p.F140F 0.28 TCGA-DA-A95Z-06 1 220970109 220970109 C T MARC1 Missense_Mutation p.P192S 0.41 tolerated(1) benign(0.001) TCGA-DA-A95Z-06 1 22202804 22202804 C T HSPG2 Missense_Mutation p.G974E 0.50 possibly_damaging(0.829) TCGA-DA-A95Z-06 1 22202805 22202805 C T HSPG2 Missense_Mutation p.G974R 0.50 benign(0.286) TCGA-DA-A95Z-06 1 222695810 222695810 G C HHIPL2 3'UTR 0.13 TCGA-DA-A95Z-06 1 222715454 222715454 C A HHIPL2 Nonsense_Mutation p.G340* 0.16 TCGA-DA-A95Z-06 1 223176405 223176405 C T DISP1 Missense_Mutation p.P556S 0.15 deleterious(0) possibly_damaging(0.882) TCGA-DA-A95Z-06 1 223177816 223177816 C T DISP1 Missense_Mutation p.S1026F 0.24 tolerated(0.08) probably_damaging(0.972) TCGA-DA-A95Z-06 1 223284326 223284326 G A TLR5 Missense_Mutation p.P683L 0.40 tolerated(0.11) benign(0.043) TCGA-DA-A95Z-06 1 226055607 226055607 G A TMEM63A Silent p.N165N 0.23 TCGA-DA-A95Z-06 1 226074577 226074577 G A LEFTY1 Silent p.I317I 0.18 TCGA-DA-A95Z-06 1 228461470 228461470 G A OBSCN Splice_Site p.X2088_splice 0.17 TCGA-DA-A95Z-06 1 228491535 228491535 G A OBSCN Missense_Mutation p.G4633E 0.19 probably_damaging(0.991) TCGA-DA-A95Z-06 1 228492186 228492186 C T OBSCN Missense_Mutation p.R4729C 0.47 benign(0.109) TCGA-DA-A95Z-06 1 2289015 2289015 G A MORN1 Missense_Mutation p.P298S 0.57 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 230459186 230459186 G A PGBD5 Silent p.A451A 0.21 TCGA-DA-A95Z-06 1 230459353 230459353 G A PGBD5 Missense_Mutation p.H396Y 0.26 tolerated(0.15) benign(0.068) TCGA-DA-A95Z-06 1 230846074 230846074 G A AGT Silent p.L175L 0.25 TCGA-DA-A95Z-06 1 230933933 230933933 G A CAPN9 Silent p.K671K 0.24 TCGA-DA-A95Z-06 1 232941608 232941608 C T MAP10 Missense_Mutation p.S280L 0.41 tolerated(0.18) possibly_damaging(0.896) TCGA-DA-A95Z-06 1 233121978 233121978 C T PCNXL2 Missense_Mutation p.G2034S 0.38 deleterious(0.03) probably_damaging(1) TCGA-DA-A95Z-06 1 233394880 233394880 G A PCNXL2 Missense_Mutation p.S243F 0.16 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-DA-A95Z-06 1 233802429 233802429 C T KCNK1 Silent p.F148F 0.41 TCGA-DA-A95Z-06 1 233807058 233807058 G A KCNK1 Missense_Mutation p.E265K 0.19 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 1 235299375 235299375 G A RBM34 Missense_Mutation p.S288L 0.22 deleterious(0) probably_damaging(0.992) TCGA-DA-A95Z-06 1 235377141 235377141 G A ARID4B Missense_Mutation p.S595F 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Z-06 1 235872424 235872424 A G LYST Silent p.A3370A 0.28 TCGA-DA-A95Z-06 1 235897980 235897980 T C LYST Intron 0.17 TCGA-DA-A95Z-06 1 236723126 236723126 G T HEATR1 Missense_Mutation p.T1553N 0.21 tolerated(0.1) benign(0.017) TCGA-DA-A95Z-06 1 236881236 236881236 G A ACTN2 Missense_Mutation p.G69S 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 23707857 23707857 T C TCEA3 3'UTR 0.55 TCGA-DA-A95Z-06 1 237982396 237982396 G A RYR2 Missense_Mutation p.E4832K 0.20 possibly_damaging(0.881) TCGA-DA-A95Z-06 1 240371762 240371762 T C FMN2 Missense_Mutation p.I1217T 0.21 unknown(0) TCGA-DA-A95Z-06 1 240492680 240492680 G A FMN2 Missense_Mutation p.R1450Q 0.21 probably_damaging(1) TCGA-DA-A95Z-06 1 243327994 243327994 T C CEP170 Missense_Mutation p.T1090A 0.12 tolerated(0.27) benign(0.314) TCGA-DA-A95Z-06 1 24410858 24410858 G A MYOM3 Intron 0.69 TCGA-DA-A95Z-06 1 245245421 245245421 G A EFCAB2 Missense_Mutation p.E74K 0.17 deleterious(0.04) benign(0.261) TCGA-DA-A95Z-06 1 245530200 245530200 G A KIF26B Nonsense_Mutation p.W177* 0.45 TCGA-DA-A95Z-06 1 245530598 245530598 C T KIF26B Nonsense_Mutation p.Q310* 0.38 TCGA-DA-A95Z-06 1 247150915 247150915 C A ZNF695 Missense_Mutation p.C301F 0.11 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 247492797 247492797 G A ZNF496 Silent p.N28N 0.17 TCGA-DA-A95Z-06 1 247588370 247588370 G A NLRP3 Missense_Mutation p.G542E 0.44 tolerated(0.14) benign(0.005) TCGA-DA-A95Z-06 1 248129266 248129266 G A OR2AK2 Silent p.E211E 0.27 TCGA-DA-A95Z-06 1 248224138 248224138 C T OR2L3 Missense_Mutation p.T52I 0.36 tolerated(0.27) benign(0.002) TCGA-DA-A95Z-06 1 248224913 248224913 G A OR2L3 Silent p.G310G 0.19 TCGA-DA-A95Z-06 1 248263394 248263394 C T OR2L13 Silent p.T239T 0.37 TCGA-DA-A95Z-06 1 248308943 248308943 C T OR2M5 Missense_Mutation p.S165F 0.24 deleterious(0.03) benign(0.075) TCGA-DA-A95Z-06 1 248344149 248344149 C T OR2M2 Missense_Mutation p.L288F 0.18 deleterious(0.02) possibly_damaging(0.452) TCGA-DA-A95Z-06 1 248436600 248436600 C T OR2T33 Missense_Mutation p.D173N 0.24 tolerated(0.72) benign(0.322) TCGA-DA-A95Z-06 1 248458244 248458244 G A OR2T12 Silent p.L213L 0.40 TCGA-DA-A95Z-06 1 248512379 248512379 C T OR14C36 Silent p.L101L 0.29 TCGA-DA-A95Z-06 1 248525287 248525287 C T OR2T4 Silent p.F135F 0.40 TCGA-DA-A95Z-06 1 248525877 248525877 C T OR2T4 Missense_Mutation p.A332V 0.63 deleterious(0) benign(0.167) TCGA-DA-A95Z-06 1 248551017 248551017 C T OR2T6 Silent p.F36F 0.72 TCGA-DA-A95Z-06 1 248636874 248636874 G A OR2T3 Missense_Mutation p.D75N 0.22 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 1 248737711 248737711 C T OR2T34 Silent p.E116E 0.20 TCGA-DA-A95Z-06 1 248756259 248756259 C T OR2T10 Missense_Mutation p.D271N 0.16 deleterious(0.02) benign(0.314) TCGA-DA-A95Z-06 1 248757010 248757010 C T OR2T10 Silent p.Q20Q 0.22 TCGA-DA-A95Z-06 1 26527845 26527845 G A CATSPER4 Missense_Mutation p.M400I 0.46 deleterious(0.02) benign(0.045) TCGA-DA-A95Z-06 1 27056339 27056339 C T ARID1A Silent p.L445L 0.47 TCGA-DA-A95Z-06 1 27622884 27622884 C T WDTC1 Missense_Mutation p.S314F 0.21 deleterious(0.01) benign(0.116) TCGA-DA-A95Z-06 1 27876122 27876122 G A AHDC1 Silent p.L835L 0.30 TCGA-DA-A95Z-06 1 28176968 28176968 C T PPP1R8 3'UTR 0.55 TCGA-DA-A95Z-06 1 28864375 28864375 C T RCC1 Silent p.N405N 0.50 TCGA-DA-A95Z-06 1 29040816 29040816 C T GMEB1 Missense_Mutation p.S418F 0.62 deleterious(0) possibly_damaging(0.656) TCGA-DA-A95Z-06 1 29391556 29391556 G T EPB41 Missense_Mutation p.K690N 0.64 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 1 31210493 31210493 C T LAPTM5 Missense_Mutation p.M188I 0.27 deleterious(0.02) benign(0.226) TCGA-DA-A95Z-06 1 31440155 31440155 A T PUM1 Missense_Mutation p.Y550N 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A95Z-06 1 32155376 32155376 G A COL16A1 Missense_Mutation p.P529L 0.29 unknown(0) TCGA-DA-A95Z-06 1 32157242 32157242 C T COL16A1 Missense_Mutation p.G420D 0.39 unknown(0) TCGA-DA-A95Z-06 1 32262305 32262305 G A SPOCD1 Silent p.I719I 0.25 TCGA-DA-A95Z-06 1 33236670 33236670 C T KIAA1522 Silent p.L630L 0.55 TCGA-DA-A95Z-06 1 33321629 33321629 C T S100PBP Missense_Mutation p.S406L 0.56 tolerated_low_confidence(0.08) benign(0.176) TCGA-DA-A95Z-06 1 33612790 33612790 G A TRIM62 Silent p.T472T 0.47 TCGA-DA-A95Z-06 1 33612791 33612791 G A TRIM62 Missense_Mutation p.T472I 0.47 deleterious(0.02) possibly_damaging(0.859) TCGA-DA-A95Z-06 1 34128532 34128532 C T CSMD2 Missense_Mutation p.D1365N 0.21 deleterious(0.05) benign(0.395) TCGA-DA-A95Z-06 1 34164436 34164436 C T CSMD2 Missense_Mutation p.G1241E 0.37 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 1 34204844 34204844 G A CSMD2 Silent p.F715F 0.63 TCGA-DA-A95Z-06 1 36553067 36553067 G A TEKT2 Missense_Mutation p.E295K 0.41 tolerated(0.23) benign(0.008) TCGA-DA-A95Z-06 1 36754933 36754933 C A THRAP3 Missense_Mutation p.A438D 0.67 tolerated(0.16) benign(0.167) TCGA-DA-A95Z-06 1 3683816 3683816 G A CCDC27 Missense_Mutation p.R517K 0.45 tolerated(0.85) benign(0.078) TCGA-DA-A95Z-06 1 37270678 37270678 G A GRIK3 Silent p.F825F 0.62 TCGA-DA-A95Z-06 1 38351321 38351321 G A INPP5B Silent p.I436I 0.22 TCGA-DA-A95Z-06 1 39800718 39800718 C T MACF1 Intron 0.23 TCGA-DA-A95Z-06 1 40033101 40033101 G A PABPC4 Intron 0.29 TCGA-DA-A95Z-06 1 40092553 40092553 G A HEYL Missense_Mutation p.P205S 0.67 tolerated(0.48) benign(0.077) TCGA-DA-A95Z-06 1 40734132 40734132 C T ZMPSTE24 Silent p.F133F 0.26 TCGA-DA-A95Z-06 1 40875428 40875428 G C SMAP2 Splice_Site p.X108_splice 0.50 TCGA-DA-A95Z-06 1 41012390 41012390 C T ZNF684 Missense_Mutation p.S132L 0.45 tolerated(0.32) benign(0.04) TCGA-DA-A95Z-06 1 42048760 42048760 G A HIVEP3 Missense_Mutation p.S570F 0.57 benign(0.429) TCGA-DA-A95Z-06 1 43110401 43110401 G A CCDC30 Missense_Mutation p.E605K 0.63 tolerated(0.06) benign(0.377) TCGA-DA-A95Z-06 1 43892477 43892477 C T SZT2 Silent p.S1045S 0.36 TCGA-DA-A95Z-06 1 43907731 43907731 C T SZT2 Silent p.R2544R 0.51 TCGA-DA-A95Z-06 1 44446804 44446804 C T B4GALT2 Missense_Mutation p.P20L 0.91 tolerated_low_confidence(0.14) possibly_damaging(0.713) TCGA-DA-A95Z-06 1 44476528 44476528 G A SLC6A9 Silent p.T92T 0.63 TCGA-DA-A95Z-06 1 46033729 46033729 G A AKR1A1 Nonsense_Mutation p.W144* 0.32 TCGA-DA-A95Z-06 1 47606477 47606477 G A CYP4A22 Missense_Mutation p.R74Q 0.59 tolerated(0.62) benign(0.004) TCGA-DA-A95Z-06 1 50642778 50642778 G A ELAVL4 Missense_Mutation p.G107R 0.23 deleterious(0.01) probably_damaging(0.952) TCGA-DA-A95Z-06 1 51829619 51829619 T - EPS15 Frame_Shift_Del p.T760Hfs*43 0.35 TCGA-DA-A95Z-06 1 52740198 52740198 G A ZFYVE9 Missense_Mutation p.M896I 0.31 tolerated(0.57) benign(0.003) TCGA-DA-A95Z-06 1 53712671 53712671 G A LRP8 3'UTR 0.45 TCGA-DA-A95Z-06 1 54562101 54562101 C T TCEANC2 Silent p.S194S 0.28 TCGA-DA-A95Z-06 1 57258472 57258472 C T C1orf168 Missense_Mutation p.G5E 0.28 deleterious(0) probably_damaging(0.959) TCGA-DA-A95Z-06 1 57347137 57347137 G A C8A Missense_Mutation p.E162K 0.57 tolerated(0.08) benign(0.111) TCGA-DA-A95Z-06 1 57476886 57476886 C T DAB1 Missense_Mutation p.D502N 0.55 tolerated(0.08) probably_damaging(0.999) TCGA-DA-A95Z-06 1 57537205 57537205 G A DAB1 Missense_Mutation p.A183V 0.30 tolerated(0.17) possibly_damaging(0.55) TCGA-DA-A95Z-06 1 59004549 59004549 G A OMA1 Missense_Mutation p.P140S 0.23 tolerated(0.45) benign(0.009) TCGA-DA-A95Z-06 1 60359317 60359317 A G CYP2J2 3'UTR 0.55 TCGA-DA-A95Z-06 1 6189106 6189106 G A CHD5 Silent p.I1137I 0.20 TCGA-DA-A95Z-06 1 62626648 62626648 G A INADL 3'UTR 0.23 TCGA-DA-A95Z-06 1 62672478 62672478 G A L1TD1 Missense_Mutation p.E60K 0.25 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 1 62713228 62713228 G A KANK4 Silent p.L933L 0.64 TCGA-DA-A95Z-06 1 62739650 62739650 C T KANK4 Missense_Mutation p.E376K 0.51 tolerated(0.1) benign(0.005) TCGA-DA-A95Z-06 1 63119728 63119728 G A DOCK7 Missense_Mutation p.P83S 0.62 deleterious(0.02) possibly_damaging(0.721) TCGA-DA-A95Z-06 1 64608368 64608368 C T ROR1 Intron 0.62 TCGA-DA-A95Z-06 1 65332798 65332798 G A JAK1 Silent p.F247F 0.27 TCGA-DA-A95Z-06 1 66062146 66062146 C T LEPR Missense_Mutation p.P240L 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 71418590 71418590 T G PTGER3 Nonstop_Mutation p.*419Yext*12 0.32 TCGA-DA-A95Z-06 1 71418649 71418649 C T PTGER3 Missense_Mutation p.E400K 0.54 tolerated_low_confidence(0.2) benign(0) TCGA-DA-A95Z-06 1 74665471 74665471 G A FPGT-TNNI3K Missense_Mutation p.G82E 0.28 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-DA-A95Z-06 1 75055232 75055232 C T C1orf173 Intron 0.28 TCGA-DA-A95Z-06 1 75072339 75072339 C T C1orf173 Missense_Mutation p.G479R 0.31 tolerated(0.12) benign(0.177) TCGA-DA-A95Z-06 1 75078475 75078475 G A C1orf173 Missense_Mutation p.S340F 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 75139310 75139310 C T C1orf173 5'UTR 0.27 TCGA-DA-A95Z-06 1 75672156 75672156 C T SLC44A5 3'UTR 0.42 TCGA-DA-A95Z-06 1 75684234 75684234 C T SLC44A5 Missense_Mutation p.M490I 0.58 deleterious(0.02) benign(0.063) TCGA-DA-A95Z-06 1 76333265 76333265 C T MSH4 Missense_Mutation p.P433S 0.62 tolerated(0.13) benign(0.3) TCGA-DA-A95Z-06 1 78001598 78001598 C T AK5 Nonsense_Mutation p.Q499* 0.58 TCGA-DA-A95Z-06 1 78479070 78479070 C T DNAJB4 Nonsense_Mutation p.R183* 0.34 TCGA-DA-A95Z-06 1 78958951 78958951 C T PTGFR Nonsense_Mutation p.R175* 0.22 TCGA-DA-A95Z-06 1 79002119 79002119 G A PTGFR Missense_Mutation p.G276E 0.55 tolerated(1) benign(0.004) TCGA-DA-A95Z-06 1 809501 809501 G A FAM41C 5'Flank 0.52 TCGA-DA-A95Z-06 1 8384558 8384558 C T SLC45A1 Missense_Mutation p.R57C 0.24 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-DA-A95Z-06 1 85790478 85790478 T C DDAH1 Missense_Mutation p.N229S 0.28 tolerated(1) benign(0) TCGA-DA-A95Z-06 1 89298970 89298970 C T PKN2 Missense_Mutation p.P932S 0.40 deleterious(0) probably_damaging(0.981) TCGA-DA-A95Z-06 1 89732091 89732091 G A GBP5 Missense_Mutation p.S269F 0.28 deleterious(0.04) possibly_damaging(0.483) TCGA-DA-A95Z-06 1 90493156 90493182 GAAGTAGAGGGAGTGGGGGAAGTAGAG - ZNF326 In_Frame_Del p.G552_E560del 0.24 TCGA-DA-A95Z-06 1 9097974 9097974 C T SLC2A5 Silent p.L428L 0.60 TCGA-DA-A95Z-06 1 92554265 92554265 G A BTBD8 Missense_Mutation p.E54K 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 1 94639628 94639628 C T ARHGAP29 Missense_Mutation p.D1195N 0.26 tolerated_low_confidence(0.55) benign(0.021) TCGA-DA-A95Z-06 1 94639901 94639901 C T ARHGAP29 Missense_Mutation p.E1104K 0.29 deleterious(0.03) benign(0.146) TCGA-DA-A95Z-06 1 949766 949766 C T ISG15 Missense_Mutation p.P136S 0.65 tolerated(0.54) benign(0.094) TCGA-DA-A95Z-06 1 9714597 9714597 G A C1orf200 5'UTR 0.33 TCGA-DA-A95Z-06 1 97700457 97700457 G A DPYD Missense_Mutation p.S798F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 20 10030761 10030761 G A ANKEF1 Missense_Mutation p.G515E 0.27 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 20 13251252 13251252 C T ISM1 Silent p.P80P 0.43 TCGA-DA-A95Z-06 20 13567928 13567928 G A TASP1 Silent p.S124S 0.33 TCGA-DA-A95Z-06 20 13867028 13867028 C T SEL1L2 Missense_Mutation p.R269K 0.43 deleterious(0.02) benign(0.194) TCGA-DA-A95Z-06 20 1638301 1638301 C T SIRPG Silent p.L20L 0.24 TCGA-DA-A95Z-06 20 18142866 18142866 C T CSRP2BP Missense_Mutation p.P362L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Z-06 20 18794980 18794980 G A SCP2D1 3'UTR 0.36 TCGA-DA-A95Z-06 20 23065129 23065129 G A CD93 Silent p.S567S 0.36 TCGA-DA-A95Z-06 20 23433368 23433368 C T CST11 Silent p.R27R 0.52 TCGA-DA-A95Z-06 20 23472238 23472238 C T CST8 5'UTR 0.61 TCGA-DA-A95Z-06 20 23666596 23666596 C T CST4 Missense_Mutation p.E121K 0.26 tolerated(0.33) benign(0.052) TCGA-DA-A95Z-06 20 25228991 25228991 G A PYGB Silent p.T59T 0.58 TCGA-DA-A95Z-06 20 2572987 2572987 C T TMC2 Missense_Mutation p.P289L 0.54 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Z-06 20 30419523 30419523 C T MYLK2 Missense_Mutation p.P481L 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 20 30432417 30432417 G A FOXS1 Missense_Mutation p.S310F 0.46 deleterious(0.01) possibly_damaging(0.548) TCGA-DA-A95Z-06 20 30897853 30897853 C T KIF3B Silent p.T91T 0.30 TCGA-DA-A95Z-06 20 31812208 31812208 C T BPIFA3 Missense_Mutation p.S109L 0.56 deleterious(0) possibly_damaging(0.811) TCGA-DA-A95Z-06 20 31889209 31889209 G A BPIFB1 Silent p.L306L 0.53 TCGA-DA-A95Z-06 20 31948146 31948146 G A CDK5RAP1 Intron 0.30 TCGA-DA-A95Z-06 20 3210289 3210289 G A SLC4A11 Silent p.L584L 0.17 TCGA-DA-A95Z-06 20 3233062 3233062 G A C20orf194 3'UTR 0.33 TCGA-DA-A95Z-06 20 33859557 33859557 G A MMP24 Missense_Mutation p.D507N 0.44 deleterious(0) possibly_damaging(0.839) TCGA-DA-A95Z-06 20 33999785 33999785 C T UQCC1 5'UTR 0.54 TCGA-DA-A95Z-06 20 34797764 34797764 A G EPB41L1 Missense_Mutation p.I675V 0.33 tolerated(0.49) benign(0.002) TCGA-DA-A95Z-06 20 37601201 37601201 G A DHX35 Splice_Site p.X59_splice 0.30 TCGA-DA-A95Z-06 20 40827881 40827881 G A PTPRT Silent p.F830F 0.51 TCGA-DA-A95Z-06 20 43836177 43836177 G A SEMG1 Missense_Mutation p.R80Q 0.51 tolerated(0.45) benign(0.009) TCGA-DA-A95Z-06 20 44168004 44168004 G A WFDC6 Missense_Mutation p.L15F 0.52 tolerated(0.19) benign(0.004) TCGA-DA-A95Z-06 20 44582528 44582528 G A ZNF335 Silent p.P834P 0.54 TCGA-DA-A95Z-06 20 44592526 44592526 G A ZNF335 Silent p.A402A 0.49 TCGA-DA-A95Z-06 20 44869697 44869697 G A CDH22 Missense_Mutation p.S152L 0.58 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 20 44986350 44986350 G A SLC35C2 Silent p.A61A 0.29 TCGA-DA-A95Z-06 20 45131398 45131398 C T ZNF334 Missense_Mutation p.E194K 0.38 deleterious(0.04) benign(0.296) TCGA-DA-A95Z-06 20 45224976 45224976 T C SLC13A3 Missense_Mutation p.D205G 0.34 tolerated(0.28) benign(0.012) TCGA-DA-A95Z-06 20 46311773 46311773 G A SULF2 Silent p.F343F 0.35 TCGA-DA-A95Z-06 20 48129625 48129625 C T PTGIS Missense_Mutation p.D400N 0.40 deleterious(0) possibly_damaging(0.759) TCGA-DA-A95Z-06 20 48156149 48156149 C T PTGIS Missense_Mutation p.D211N 0.29 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 20 4880302 4880302 G A SLC23A2 Silent p.A127A 0.30 TCGA-DA-A95Z-06 20 50715045 50715045 G A ZFP64 Missense_Mutation p.T85I 0.55 tolerated(0.1) benign(0.002) TCGA-DA-A95Z-06 20 50769433 50769433 G A ZFP64 Missense_Mutation p.S433F 0.37 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 20 51870400 51870400 G A TSHZ2 Missense_Mutation p.D135N 0.52 tolerated(0.7) probably_damaging(0.998) TCGA-DA-A95Z-06 20 51870490 51870490 G A TSHZ2 Missense_Mutation p.D165N 0.55 tolerated(0.4) possibly_damaging(0.51) TCGA-DA-A95Z-06 20 52775617 52775617 G A CYP24A1 Missense_Mutation p.P346S 0.58 deleterious(0) possibly_damaging(0.788) TCGA-DA-A95Z-06 20 5282949 5282949 G A PROKR2 Missense_Mutation p.R298C 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 20 5282995 5282995 C T PROKR2 Silent p.T282T 0.48 TCGA-DA-A95Z-06 20 55803318 55803318 C T BMP7 Missense_Mutation p.S193N 0.31 deleterious(0.01) possibly_damaging(0.859) TCGA-DA-A95Z-06 20 56185224 56185224 C T ZBP1 Silent p.G358G 0.33 TCGA-DA-A95Z-06 20 56227613 56227613 G A PMEPA1 Silent p.A120A 0.36 TCGA-DA-A95Z-06 20 57429919 57429919 C A GNAS Silent p.P533P 0.68 TCGA-DA-A95Z-06 20 57484232 57484232 C T GNAS Silent p.I825I 0.55 TCGA-DA-A95Z-06 20 57766864 57766864 G A ZNF831 Missense_Mutation p.E264K 0.57 deleterious(0.02) possibly_damaging(0.746) TCGA-DA-A95Z-06 20 57828095 57828095 G A ZNF831 Missense_Mutation p.E1364K 0.57 tolerated(0.91) benign(0.001) TCGA-DA-A95Z-06 20 58519441 58519441 C T FAM217B Missense_Mutation p.S148F 0.56 deleterious(0) benign(0.319) TCGA-DA-A95Z-06 20 58519442 58519442 C T FAM217B Silent p.S148S 0.55 TCGA-DA-A95Z-06 20 58519769 58519769 C T FAM217B Silent p.I257I 0.50 TCGA-DA-A95Z-06 20 58569265 58569265 C T CDH26 Intron 0.14 TCGA-DA-A95Z-06 20 5904553 5904553 A C CHGB Missense_Mutation p.N588T 0.58 deleterious(0.01) possibly_damaging(0.543) TCGA-DA-A95Z-06 20 60504812 60504812 G A CDH4 Silent p.G717G 0.31 TCGA-DA-A95Z-06 20 60911795 60911795 G A LAMA5 Missense_Mutation p.P738S 0.63 possibly_damaging(0.475) TCGA-DA-A95Z-06 20 61541367 61541367 A C DIDO1 Missense_Mutation p.M282R 0.33 probably_damaging(0.999) TCGA-DA-A95Z-06 20 62173931 62173931 C T SRMS Missense_Mutation p.A217T 0.29 tolerated(0.45) benign(0.005) TCGA-DA-A95Z-06 20 62173932 62173932 C T SRMS Silent p.K216K 0.32 TCGA-DA-A95Z-06 20 62724141 62724141 C T OPRL1 Missense_Mutation p.S23F 0.54 deleterious(0) possibly_damaging(0.577) TCGA-DA-A95Z-06 20 629398 629398 A G SRXN1 Missense_Mutation p.L125P 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 20 8630053 8630053 G A PLCB1 Missense_Mutation p.R184Q 0.59 deleterious(0.01) benign(0.357) TCGA-DA-A95Z-06 20 9288477 9288477 G A PLCB4 Missense_Mutation p.E6K 0.47 tolerated(0.09) possibly_damaging(0.763) TCGA-DA-A95Z-06 20 9546769 9546769 G A PAK7 Missense_Mutation p.S418F 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-DA-A95Z-06 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.57 tolerated(0.4) benign(0) TCGA-DA-A95Z-06 21 10862629 10862629 G A IGHV1OR21-1 Nonsense_Mutation p.W3* 0.18 TCGA-DA-A95Z-06 21 10862639 10862639 G A IGHV1OR21-1 Silent p.R6R 0.14 TCGA-DA-A95Z-06 21 10910308 10910308 G A TPTE Missense_Mutation p.S483L 0.12 tolerated(0.11) benign(0.031) TCGA-DA-A95Z-06 21 10942770 10942770 G A TPTE Missense_Mutation p.S224L 0.14 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 21 10942965 10942965 G A TPTE Silent p.L208L 0.17 TCGA-DA-A95Z-06 21 11015004 11015004 G A TPTE RNA 0.15 TCGA-DA-A95Z-06 21 11038995 11038995 C T BAGE2 RNA 0.07 TCGA-DA-A95Z-06 21 11039319 11039319 C T BAGE2 RNA 0.05 TCGA-DA-A95Z-06 21 15537711 15537711 C T LIPI Missense_Mutation p.G266E 0.36 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 21 30248582 30248582 C T N6AMT1 3'UTR 0.46 TCGA-DA-A95Z-06 21 33297041 33297041 G A HUNK Missense_Mutation p.E175K 0.44 deleterious(0) possibly_damaging(0.803) TCGA-DA-A95Z-06 21 33340585 33340585 C T HUNK Missense_Mutation p.L300F 0.35 deleterious(0.04) probably_damaging(1) TCGA-DA-A95Z-06 21 34003974 34003974 G A SYNJ1 Silent p.D1390D 0.39 TCGA-DA-A95Z-06 21 35279649 35279649 G C AP000304.12 Missense_Mutation p.A95G 0.36 tolerated(0.07) probably_damaging(0.968) TCGA-DA-A95Z-06 21 37583916 37583916 C T DOPEY2 Silent p.I249I 0.32 TCGA-DA-A95Z-06 21 38792632 38792632 C T DYRK1A 5'UTR 0.47 TCGA-DA-A95Z-06 21 40619692 40619692 C T BRWD1 Missense_Mutation p.G806S 0.42 tolerated(0.73) benign(0.048) TCGA-DA-A95Z-06 21 43282097 43282097 G A PRDM15 Silent p.A213A 0.32 TCGA-DA-A95Z-06 21 43711744 43711744 G A ABCG1 Missense_Mutation p.G556E 0.62 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 21 46875444 46875444 G A COL18A1 5'UTR 0.42 TCGA-DA-A95Z-06 21 47570382 47570382 C T FTCD Missense_Mutation p.A232T 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-DA-A95Z-06 21 47929222 47929222 C T DIP2A Silent p.T279T 0.29 TCGA-DA-A95Z-06 22 16258213 16258213 C T POTEH Silent p.Q537Q 0.74 TCGA-DA-A95Z-06 22 16287527 16287527 G A POTEH Missense_Mutation p.S120F 0.47 deleterious_low_confidence(0.03) probably_damaging(0.96) TCGA-DA-A95Z-06 22 16287620 16287620 G A POTEH Missense_Mutation p.S89F 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DA-A95Z-06 22 16449305 16449305 C T OR11H1 Missense_Mutation p.G167E 0.92 deleterious(0) probably_damaging(0.989) TCGA-DA-A95Z-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.45 deleterious(0.01) possibly_damaging(0.461) TCGA-DA-A95Z-06 22 17072096 17072096 G A CCT8L2 Missense_Mutation p.P449S 0.75 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 22 18368659 18368659 G A MICAL3 Silent p.I742I 0.82 TCGA-DA-A95Z-06 22 19119102 19119102 C T TSSK2 Silent p.L64L 0.79 TCGA-DA-A95Z-06 22 19420122 19420122 G A MRPL40 Silent p.P15P 0.36 TCGA-DA-A95Z-06 22 20937674 20937674 C T MED15 Missense_Mutation p.S577L 0.23 deleterious(0) probably_damaging(0.938) TCGA-DA-A95Z-06 22 21377411 21377411 C T P2RX6 Missense_Mutation p.P188S 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-DA-A95Z-06 22 22697948 22697948 G A IGLV9-49 Missense_Mutation p.G79E 0.18 deleterious(0.01) possibly_damaging(0.679) TCGA-DA-A95Z-06 22 22869402 22869402 C T ZNF280A Missense_Mutation p.D185N 0.73 tolerated(0.12) benign(0.053) TCGA-DA-A95Z-06 22 22937293 22937293 G A IGLV3-32 Silent p.R37R 0.76 TCGA-DA-A95Z-06 22 23047303 23047303 C T IGLV3-22 Missense_Mutation p.P114L 0.21 deleterious_low_confidence(0.01) benign(0.01) TCGA-DA-A95Z-06 22 24580147 24580147 G A SUSD2 Silent p.V161V 0.76 TCGA-DA-A95Z-06 22 25017007 25017007 G A GGT1 Missense_Mutation p.A235T 0.64 tolerated(0.44) benign(0.024) TCGA-DA-A95Z-06 22 25024891 25024891 C T GGT1 3'UTR 0.25 TCGA-DA-A95Z-06 22 25154005 25154005 C T PIWIL3 Silent p.G75G 0.25 TCGA-DA-A95Z-06 22 25753225 25753225 G A LRP5L Silent p.I145I 0.71 TCGA-DA-A95Z-06 22 26348303 26348303 C T MYO18B Nonsense_Mutation p.R1962* 0.14 TCGA-DA-A95Z-06 22 26422685 26422685 G A MYO18B Missense_Mutation p.A2249T 0.12 deleterious(0) probably_damaging(0.984) TCGA-DA-A95Z-06 22 26688704 26688704 C T SEZ6L Nonsense_Mutation p.Q143* 0.85 TCGA-DA-A95Z-06 22 26692916 26692916 C T SEZ6L Silent p.T344T 0.25 TCGA-DA-A95Z-06 22 26709847 26709847 G A SEZ6L Missense_Mutation p.R665Q 0.67 deleterious(0) probably_damaging(0.969) TCGA-DA-A95Z-06 22 29745330 29745330 G A AP1B1 Silent p.S438S 0.60 TCGA-DA-A95Z-06 22 29835149 29835149 C A RFPL1 Missense_Mutation p.F123L 0.28 deleterious(0.02) possibly_damaging(0.448) TCGA-DA-A95Z-06 22 29885319 29885319 G A NEFH Missense_Mutation p.A564T 0.65 tolerated(0.09) unknown(0) TCGA-DA-A95Z-06 22 30639552 30639552 C T LIF 3'UTR 0.26 TCGA-DA-A95Z-06 22 30951426 30951426 C T GAL3ST1 Silent p.L262L 0.71 TCGA-DA-A95Z-06 22 32330145 32330145 G A C22orf24 Missense_Mutation p.P148S 0.21 tolerated_low_confidence(0.19) benign(0.001) TCGA-DA-A95Z-06 22 32788260 32788260 G A RTCB Silent p.I459I 0.66 TCGA-DA-A95Z-06 22 35948152 35948152 C G RASD2 3'UTR 0.69 TCGA-DA-A95Z-06 22 35948153 35948153 C T RASD2 3'UTR 0.68 TCGA-DA-A95Z-06 22 36205964 36205964 G A RBFOX2 Missense_Mutation p.P109S 0.24 benign(0.133) TCGA-DA-A95Z-06 22 37098707 37098707 A G CACNG2 5'UTR 0.83 TCGA-DA-A95Z-06 22 37329931 37329931 C T CSF2RB Missense_Mutation p.P404S 0.20 tolerated(0.08) possibly_damaging(0.762) TCGA-DA-A95Z-06 22 38120184 38120184 C T TRIOBP Missense_Mutation p.P541S 0.52 tolerated_low_confidence(0.08) possibly_damaging(0.641) TCGA-DA-A95Z-06 22 38916000 38916000 G C DMC1 3'UTR 0.14 TCGA-DA-A95Z-06 22 39134709 39134709 G A SUN2 Silent p.F631F 0.73 TCGA-DA-A95Z-06 22 39262568 39262568 G A CBX6 Silent p.L295L 0.68 TCGA-DA-A95Z-06 22 39355613 39355613 C A APOBEC3A Nonsense_Mutation p.Y32* 0.68 TCGA-DA-A95Z-06 22 39388083 39388083 C T APOBEC3B Missense_Mutation p.P355S 0.28 deleterious(0.04) possibly_damaging(0.779) TCGA-DA-A95Z-06 22 39910205 39910205 C T MIEF1 Silent p.V423V 0.14 TCGA-DA-A95Z-06 22 40036947 40036947 G C CACNA1I Silent p.S272S 0.76 TCGA-DA-A95Z-06 22 40045755 40045755 G A CACNA1I Missense_Mutation p.G606E 0.85 tolerated(0.45) probably_damaging(0.931) TCGA-DA-A95Z-06 22 40045756 40045756 G A CACNA1I Silent p.G606G 0.85 TCGA-DA-A95Z-06 22 42172111 42172111 C T MEI1 Silent p.L850L 0.70 TCGA-DA-A95Z-06 22 42538829 42538829 G A NDUFA6-AS1 3'Flank 0.63 TCGA-DA-A95Z-06 22 42538830 42538830 G A NDUFA6-AS1 3'Flank 0.62 TCGA-DA-A95Z-06 22 44031021 44031021 C T EFCAB6 Missense_Mutation p.E687K 0.67 tolerated(0.13) possibly_damaging(0.804) TCGA-DA-A95Z-06 22 44074009 44074009 C T EFCAB6 Missense_Mutation p.R429Q 0.11 tolerated(0.27) benign(0.042) TCGA-DA-A95Z-06 22 44893385 44893385 G A LDOC1L Missense_Mutation p.P18S 0.77 tolerated_low_confidence(0.11) benign(0) TCGA-DA-A95Z-06 22 50302902 50302902 G A ALG12 Missense_Mutation p.S253F 0.20 probably_damaging(0.992) TCGA-DA-A95Z-06 22 50438976 50438976 G A IL17REL Missense_Mutation p.L89F 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-DA-A95Z-06 22 50469323 50469323 G A TTLL8 Missense_Mutation p.S596F 0.27 tolerated(0.05) probably_damaging(0.982) TCGA-DA-A95Z-06 22 50714235 50714235 G A AL022328.1 Missense_Mutation p.D45N 0.17 deleterious_low_confidence(0) unknown(0) TCGA-DA-A95Z-06 22 50899691 50899691 G A SBF1 Missense_Mutation p.S955F 0.72 deleterious(0) possibly_damaging(0.868) TCGA-DA-A95Z-06 22 50902986 50902986 G A SBF1 Missense_Mutation p.T538I 0.74 tolerated(1) benign(0.228) TCGA-DA-A95Z-06 2 101023066 101023066 G A CHST10 Silent p.F24F 0.56 TCGA-DA-A95Z-06 2 101666871 101666871 G A TBC1D8 Silent p.I273I 0.35 TCGA-DA-A95Z-06 2 102625009 102625009 C T IL1R2 5'UTR 0.66 TCGA-DA-A95Z-06 2 103148906 103148906 G A SLC9A4 Missense_Mutation p.G719E 0.65 tolerated(1) benign(0.322) TCGA-DA-A95Z-06 2 107423004 107423004 C T ST6GAL2 3'UTR 0.33 TCGA-DA-A95Z-06 2 107459714 107459714 C T ST6GAL2 Silent p.G240G 0.38 TCGA-DA-A95Z-06 2 108622602 108622602 G A SLC5A7 Missense_Mutation p.G280E 0.39 deleterious(0) possibly_damaging(0.908) TCGA-DA-A95Z-06 2 10925103 10925103 G A PDIA6 Missense_Mutation p.P404L 0.30 tolerated(0.06) possibly_damaging(0.796) TCGA-DA-A95Z-06 2 10925104 10925104 G A PDIA6 Missense_Mutation p.P404S 0.30 deleterious(0.01) benign(0.191) TCGA-DA-A95Z-06 2 110849265 110849265 G A MALL Missense_Mutation p.S63L 0.15 deleterious(0) probably_damaging(0.919) TCGA-DA-A95Z-06 2 112536341 112536341 C T ANAPC1 Missense_Mutation p.E1766K 0.26 deleterious(0.04) benign(0.2) TCGA-DA-A95Z-06 2 113332972 113332972 C G POLR1B Missense_Mutation p.P1025R 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 2 113332973 113332973 T C POLR1B Silent p.P1025P 0.44 TCGA-DA-A95Z-06 2 1133462 1133462 C A SNTG2 Silent p.G126G 0.15 TCGA-DA-A95Z-06 2 113587936 113587936 C T IL1B 3'UTR 0.24 TCGA-DA-A95Z-06 2 113788669 113788669 C T IL36B Missense_Mutation p.G26E 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.481) TCGA-DA-A95Z-06 2 113885161 113885161 G A IL1RN Intron 0.68 TCGA-DA-A95Z-06 2 114002161 114002161 C T PAX8 Missense_Mutation p.G78S 0.25 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 2 114256663 114256663 C T FOXD4L1 5'UTR 0.31 TCGA-DA-A95Z-06 2 116538532 116538532 T A DPP10 Missense_Mutation p.F486I 0.26 tolerated(0.07) possibly_damaging(0.74) TCGA-DA-A95Z-06 2 11696809 11696809 G A GREB1 Silent p.E23E 0.47 TCGA-DA-A95Z-06 2 119731926 119731926 G A MARCO Missense_Mutation p.G160R 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A95Z-06 2 119731927 119731927 G A MARCO Missense_Mutation p.G160E 0.58 tolerated(0.1) probably_damaging(0.999) TCGA-DA-A95Z-06 2 121747108 121747108 G A GLI2 Silent p.Q1206Q 0.30 TCGA-DA-A95Z-06 2 127808387 127808387 G A BIN1 Silent p.F521F 0.44 TCGA-DA-A95Z-06 2 128079713 128079713 G A MAP3K2 Silent p.T318T 0.50 TCGA-DA-A95Z-06 2 128183721 128183721 G A PROC Missense_Mutation p.R199Q 0.61 tolerated(0.2) possibly_damaging(0.552) TCGA-DA-A95Z-06 2 130725951 130725951 C T RAB6C-AS1 Intron 0.54 TCGA-DA-A95Z-06 2 131519695 131519695 C T AMER3 Missense_Mutation p.S17F 0.37 deleterious(0) possibly_damaging(0.906) TCGA-DA-A95Z-06 2 133539964 133539964 C T NCKAP5 Missense_Mutation p.E1474K 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 2 135621042 135621042 G A ACMSD Silent p.R109R 0.27 TCGA-DA-A95Z-06 2 135744651 135744651 T A MAP3K19 Silent p.I597I 0.22 TCGA-DA-A95Z-06 2 135888112 135888136 CTTTTTATAGAAACTGCTGATATAA - RAB3GAP1 Splice_Site p.X356_splice 0.44 TCGA-DA-A95Z-06 2 141072609 141072609 C T LRP1B Missense_Mutation p.D4234N 0.55 possibly_damaging(0.539) TCGA-DA-A95Z-06 2 141128809 141128809 C T LRP1B Missense_Mutation p.G3605E 0.55 probably_damaging(0.982) TCGA-DA-A95Z-06 2 141202172 141202172 T A LRP1B Silent p.G3378G 0.40 TCGA-DA-A95Z-06 2 141294269 141294269 G A LRP1B Missense_Mutation p.S2508F 0.24 possibly_damaging(0.788) TCGA-DA-A95Z-06 2 141458127 141458127 G A LRP1B Missense_Mutation p.S2164F 0.25 possibly_damaging(0.485) TCGA-DA-A95Z-06 2 141459294 141459294 C A LRP1B Missense_Mutation p.E2141D 0.25 benign(0.217) TCGA-DA-A95Z-06 2 149227820 149227820 C T MBD5 Missense_Mutation p.H770Y 0.27 deleterious(0.02) benign(0.291) TCGA-DA-A95Z-06 2 149868113 149868113 G A KIF5C Missense_Mutation p.A933T 0.29 tolerated(0.14) benign(0.006) TCGA-DA-A95Z-06 2 152292059 152292059 C T RIF1 Missense_Mutation p.S387F 0.47 deleterious(0) possibly_damaging(0.713) TCGA-DA-A95Z-06 2 15523442 15523442 C T NBAS Splice_Site p.X1086_splice 0.29 TCGA-DA-A95Z-06 2 155306988 155306988 G A GALNT13 Missense_Mutation p.M532I 0.49 tolerated(0.46) benign(0) TCGA-DA-A95Z-06 2 158390403 158390403 G A ACVR1C 3'UTR 0.51 TCGA-DA-A95Z-06 2 161056571 161056571 C T ITGB6 Missense_Mutation p.G2R 0.43 deleterious(0.03) probably_damaging(1) TCGA-DA-A95Z-06 2 163216869 163216869 C T GCA 3'UTR 0.58 TCGA-DA-A95Z-06 2 163302647 163302647 C T KCNH7 Missense_Mutation p.E479K 0.57 deleterious(0.05) probably_damaging(0.983) TCGA-DA-A95Z-06 2 1652976 1652976 G A PXDN Missense_Mutation p.S859F 0.34 deleterious(0) possibly_damaging(0.905) TCGA-DA-A95Z-06 2 166201246 166201246 C T SCN2A Missense_Mutation p.S915F 0.62 deleterious(0.03) possibly_damaging(0.459) TCGA-DA-A95Z-06 2 166245978 166245978 C T SCN2A Missense_Mutation p.P1888S 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 2 167327186 167327186 G A SCN7A Silent p.F201F 0.18 TCGA-DA-A95Z-06 2 168103091 168103091 C T XIRP2 Missense_Mutation p.S1730F 0.56 possibly_damaging(0.847) TCGA-DA-A95Z-06 2 168920050 168920050 C T STK39 Missense_Mutation p.E446K 0.24 tolerated(0.18) benign(0.15) TCGA-DA-A95Z-06 2 169787207 169787207 C T ABCB11 Missense_Mutation p.E1127K 0.52 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 2 170044683 170044683 C T LRP2 Missense_Mutation p.G3042E 0.26 probably_damaging(0.997) TCGA-DA-A95Z-06 2 171863011 171863011 G A TLK1 Missense_Mutation p.P581S 0.49 deleterious(0.01) benign(0.262) TCGA-DA-A95Z-06 2 175612790 175612790 T G CHRNA1 3'UTR 0.69 TCGA-DA-A95Z-06 2 178080267 178080267 G A HNRNPA3 Missense_Mutation p.G25S 0.61 tolerated(0.23) possibly_damaging(0.814) TCGA-DA-A95Z-06 2 179170956 179170956 C T OSBPL6 Silent p.S15S 0.30 TCGA-DA-A95Z-06 2 179395669 179395669 C T TTN Missense_Mutation p.E35225K 0.34 TCGA-DA-A95Z-06 2 179403499 179403499 C T TTN Nonsense_Mutation p.W33019* 0.26 TCGA-DA-A95Z-06 2 179425127 179425127 C T TTN Missense_Mutation p.G28578R 0.24 TCGA-DA-A95Z-06 2 179427743 179427743 C T TTN Missense_Mutation p.E27706K 0.59 TCGA-DA-A95Z-06 2 179428016 179428016 C T TTN Missense_Mutation p.D27615N 0.56 TCGA-DA-A95Z-06 2 179453905 179453905 C T TTN Silent p.T20849T 0.27 TCGA-DA-A95Z-06 2 179483322 179483322 A - TTN Frame_Shift_Del p.L15652* 0.20 TCGA-DA-A95Z-06 2 179496963 179496963 A G TTN Missense_Mutation p.I14553T 0.30 TCGA-DA-A95Z-06 2 179497338 179497338 C T TTN Silent p.V14465V 0.58 TCGA-DA-A95Z-06 2 179510716 179510716 G A TTN Missense_Mutation p.P13447S 0.39 TCGA-DA-A95Z-06 2 179544714 179544714 C T TTN Missense_Mutation p.E11163K 0.22 TCGA-DA-A95Z-06 2 179574573 179574573 G A TTN Silent p.I9491I 0.25 TCGA-DA-A95Z-06 2 179576836 179576836 C A TTN Nonsense_Mutation p.G9241* 0.58 TCGA-DA-A95Z-06 2 179577110 179577110 C T TTN Missense_Mutation p.G9180E 0.28 TCGA-DA-A95Z-06 2 179594171 179594171 C T TTN Missense_Mutation p.E6238K 0.58 TCGA-DA-A95Z-06 2 179596678 179596678 C T TTN Missense_Mutation p.E5642K 0.53 TCGA-DA-A95Z-06 2 179605319 179605319 G A TTN Missense_Mutation p.P4214L 0.49 TCGA-DA-A95Z-06 2 179606487 179606487 C T TTN Missense_Mutation p.E3825K 0.23 TCGA-DA-A95Z-06 2 179640506 179640506 C T TTN Missense_Mutation p.E2029K 0.27 TCGA-DA-A95Z-06 2 179640743 179640743 G A TTN Missense_Mutation p.H1950Y 0.51 TCGA-DA-A95Z-06 2 179641392 179641392 C T TTN Silent p.T1733T 0.20 TCGA-DA-A95Z-06 2 182392076 182392076 G A ITGA4 Missense_Mutation p.E798K 0.58 tolerated(0.29) benign(0.122) TCGA-DA-A95Z-06 2 182543174 182543174 G A NEUROD1 Silent p.S138S 0.62 TCGA-DA-A95Z-06 2 185800578 185800578 C T ZNF804A Missense_Mutation p.S152F 0.58 tolerated(0.57) probably_damaging(0.986) TCGA-DA-A95Z-06 2 187703747 187703747 C T ZSWIM2 Missense_Mutation p.D145N 0.23 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 2 189849645 189849645 C T COL3A1 Missense_Mutation p.P80L 0.26 unknown(0) TCGA-DA-A95Z-06 2 189957102 189957102 A T COL5A2 Silent p.P167P 0.53 TCGA-DA-A95Z-06 2 190306224 190306224 G A WDR75 Silent p.V2V 0.44 TCGA-DA-A95Z-06 2 192257915 192257915 A G MYO1B Silent p.Q731Q 0.62 TCGA-DA-A95Z-06 2 196722234 196722234 G A DNAH7 Missense_Mutation p.P2761S 0.25 tolerated(0.06) possibly_damaging(0.812) TCGA-DA-A95Z-06 2 197172745 197172745 C T HECW2 Silent p.T833T 0.28 TCGA-DA-A95Z-06 2 197597327 197597327 C T CCDC150 3'UTR 0.26 TCGA-DA-A95Z-06 2 197878297 197878297 T G HNRNPA3P15 5'Flank 0.57 TCGA-DA-A95Z-06 2 198353771 198353771 C T HSPD1 Silent p.L390L 0.20 TCGA-DA-A95Z-06 2 200193544 200193544 G A SATB2 Silent p.F421F 0.55 TCGA-DA-A95Z-06 2 200808486 200808486 A G TYW5 Splice_Site p.X101_splice 0.21 TCGA-DA-A95Z-06 2 202400809 202400809 G A ALS2CR11 Missense_Mutation p.P481S 0.55 tolerated(0.26) benign(0.344) TCGA-DA-A95Z-06 2 202900229 202900229 C T FZD7 Missense_Mutation p.R287W 0.61 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 2 20647267 20647267 G A RHOB Missense_Mutation p.G14D 0.32 deleterious(0) probably_damaging(0.957) TCGA-DA-A95Z-06 2 207454162 207454162 G A ADAM23 Missense_Mutation p.E628K 0.52 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 2 207460805 207460805 G A ADAM23 Missense_Mutation p.D760N 0.29 tolerated(0.48) benign(0.015) TCGA-DA-A95Z-06 2 207508980 207508980 G A AC010731.4 RNA 0.58 TCGA-DA-A95Z-06 2 207583057 207583057 G A DYTN 5'UTR 0.28 TCGA-DA-A95Z-06 2 209307097 209307097 C T PTH2R Silent p.F140F 0.58 TCGA-DA-A95Z-06 2 210654253 210654253 C T UNC80 Intron 0.25 TCGA-DA-A95Z-06 2 21229050 21229050 C T APOB Missense_Mutation p.E3564K 0.60 probably_damaging(0.989) TCGA-DA-A95Z-06 2 212488718 212488718 G A ERBB4 Missense_Mutation p.R711C 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-DA-A95Z-06 2 212989483 212989483 G A ERBB4 Silent p.F76F 0.28 TCGA-DA-A95Z-06 2 213872072 213872072 G A IKZF2 3'UTR 0.25 TCGA-DA-A95Z-06 2 213921615 213921615 G A IKZF2 Silent p.V116V 0.27 TCGA-DA-A95Z-06 2 213921740 213921740 C T IKZF2 Missense_Mutation p.D75N 0.50 deleterious(0.01) possibly_damaging(0.818) TCGA-DA-A95Z-06 2 215840581 215840581 G A ABCA12 Missense_Mutation p.S1770F 0.37 deleterious(0.03) possibly_damaging(0.824) TCGA-DA-A95Z-06 2 215843674 215843674 C T ABCA12 Missense_Mutation p.D1611N 0.67 tolerated(0.27) possibly_damaging(0.861) TCGA-DA-A95Z-06 2 215896579 215896579 C T ABCA12 Missense_Mutation p.G343R 0.57 tolerated(0.77) benign(0.001) TCGA-DA-A95Z-06 2 218940233 218940233 A T RUFY4 Missense_Mutation p.S360C 0.57 tolerated(0.07) benign(0.001) TCGA-DA-A95Z-06 2 219029727 219029727 C T CXCR1 Missense_Mutation p.G70S 0.23 tolerated(1) benign(0.007) TCGA-DA-A95Z-06 2 219526222 219526222 G A BCS1L Silent p.T138T 0.22 TCGA-DA-A95Z-06 2 220114887 220114887 C T TUBA4A 3'UTR 0.29 TCGA-DA-A95Z-06 2 220290464 220290464 G A DES Silent p.G456G 0.44 TCGA-DA-A95Z-06 2 220467190 220467190 G C STK11IP Missense_Mutation p.E158Q 0.48 deleterious(0) probably_damaging(0.928) TCGA-DA-A95Z-06 2 223496349 223496349 C T FARSB Missense_Mutation p.E254K 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-DA-A95Z-06 2 227661657 227661657 G A IRS1 Missense_Mutation p.R600C 0.38 deleterious(0) benign(0.333) TCGA-DA-A95Z-06 2 227662122 227662122 C T IRS1 Missense_Mutation p.V445I 0.26 tolerated(0.08) probably_damaging(0.97) TCGA-DA-A95Z-06 2 228563937 228563937 G T SLC19A3 Missense_Mutation p.A165E 0.29 tolerated(0.07) possibly_damaging(0.519) TCGA-DA-A95Z-06 2 231101927 231101927 C T SP140 Silent p.F63F 0.34 TCGA-DA-A95Z-06 2 231624726 231624726 C T CAB39 Missense_Mutation p.P4S 0.53 tolerated(0.14) benign(0.006) TCGA-DA-A95Z-06 2 232263298 232263298 G A B3GNT7 Missense_Mutation p.G290S 0.23 tolerated(0.71) benign(0.004) TCGA-DA-A95Z-06 2 232458754 232458754 G A C2orf57 Silent p.V364V 0.57 TCGA-DA-A95Z-06 2 233128139 233128139 C T DIS3L2 Missense_Mutation p.R550C 0.24 deleterious(0.02) possibly_damaging(0.758) TCGA-DA-A95Z-06 2 233272586 233272586 G A ALPPL2 Silent p.R169R 0.59 TCGA-DA-A95Z-06 2 237374244 237374244 G A IQCA1 Missense_Mutation p.A277V 0.33 deleterious(0) probably_damaging(0.988) TCGA-DA-A95Z-06 2 238672388 238672388 G A LRRFIP1 Missense_Mutation p.D678N 0.25 tolerated(0.49) benign(0.004) TCGA-DA-A95Z-06 2 241570370 241570370 G A GPR35 3'UTR 0.20 TCGA-DA-A95Z-06 2 24236264 24236264 T G MFSD2B Missense_Mutation p.L69R 0.57 deleterious(0) probably_damaging(0.978) TCGA-DA-A95Z-06 2 242650860 242650860 G A ING5 Missense_Mutation p.M115I 0.25 tolerated(0.49) benign(0.003) TCGA-DA-A95Z-06 2 25095498 25095498 G A ADCY3 Silent p.L256L 0.50 TCGA-DA-A95Z-06 2 26534871 26534871 C T GPR113 Silent p.R575R 0.36 TCGA-DA-A95Z-06 2 26739407 26739407 C T OTOF Missense_Mutation p.D130N 0.54 tolerated(0.12) benign(0.393) TCGA-DA-A95Z-06 2 27308105 27308105 G A EMILIN1 Missense_Mutation p.G885S 0.29 probably_damaging(1) TCGA-DA-A95Z-06 2 27455031 27455031 C T CAD Silent p.L862L 0.28 TCGA-DA-A95Z-06 2 27521457 27521457 C A TRIM54 Missense_Mutation p.S64Y 0.37 deleterious(0) possibly_damaging(0.905) TCGA-DA-A95Z-06 2 27657407 27657407 C T NRBP1 Missense_Mutation p.H169Y 0.51 tolerated(0.53) probably_damaging(0.934) TCGA-DA-A95Z-06 2 27720123 27720123 G A GCKR Missense_Mutation p.E25K 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A95Z-06 2 27804954 27804954 C T C2orf16 Missense_Mutation p.R1839C 0.53 tolerated(0.1) unknown(0) TCGA-DA-A95Z-06 2 27886510 27886510 C T SLC4A1AP 5'UTR 0.80 TCGA-DA-A95Z-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.35 TCGA-DA-A95Z-06 2 29293471 29293471 G A C2orf71 Silent p.L1219L 0.54 TCGA-DA-A95Z-06 2 30959398 30959398 G A CAPN13 Nonsense_Mutation p.R565* 0.31 TCGA-DA-A95Z-06 2 31147615 31147615 G A GALNT14 Missense_Mutation p.P414L 0.30 deleterious(0) probably_damaging(0.983) TCGA-DA-A95Z-06 2 31189143 31189143 C T GALNT14 Missense_Mutation p.D114N 0.54 tolerated(0.07) benign(0.017) TCGA-DA-A95Z-06 2 31621486 31621486 C T XDH Missense_Mutation p.R129Q 0.22 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 2 32117134 32117134 G A MEMO1 Silent p.F169F 0.51 TCGA-DA-A95Z-06 2 32743922 32743922 C T BIRC6 Silent p.I3844I 0.23 TCGA-DA-A95Z-06 2 33745684 33745684 G A RASGRP3 Missense_Mutation p.E101K 0.58 deleterious(0.04) probably_damaging(0.944) TCGA-DA-A95Z-06 2 33784065 33784065 G A RASGRP3 Missense_Mutation p.D678N 0.55 tolerated_low_confidence(0.93) benign(0) TCGA-DA-A95Z-06 2 37302758 37302758 A G HEATR5B Missense_Mutation p.I156T 0.35 tolerated(0.14) benign(0.395) TCGA-DA-A95Z-06 2 3743314 3743314 A G ALLC Silent p.G173G 0.41 TCGA-DA-A95Z-06 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.23 TCGA-DA-A95Z-06 2 40655623 40655623 C T SLC8A1 Missense_Mutation p.D600N 0.56 tolerated(0.4) benign(0.443) TCGA-DA-A95Z-06 2 43460014 43460014 G A THADA Silent p.A1768A 0.35 TCGA-DA-A95Z-06 2 43937259 43937259 G A PLEKHH2 Silent p.G699G 0.30 TCGA-DA-A95Z-06 2 44116891 44116891 G A LRPPRC Silent p.V1370V 0.32 TCGA-DA-A95Z-06 2 46211702 46211702 C G PRKCE Missense_Mutation p.R236G 0.23 tolerated(0.19) benign(0.029) TCGA-DA-A95Z-06 2 48808931 48808931 C T STON1-GTF2A1L Missense_Mutation p.L387F 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A95Z-06 2 48915542 48915542 C T LHCGR Nonsense_Mutation p.W465* 0.60 TCGA-DA-A95Z-06 2 48958425 48958425 G A LHCGR Silent p.Y58Y 0.26 TCGA-DA-A95Z-06 2 50318477 50318477 G A NRXN1 Silent p.I1274I 0.21 TCGA-DA-A95Z-06 2 55791506 55791506 G A SMEK2 Missense_Mutation p.P735S 0.35 tolerated(0.94) benign(0) TCGA-DA-A95Z-06 2 63176003 63176003 G A EHBP1 Missense_Mutation p.M709I 0.34 tolerated_low_confidence(0.17) benign(0.001) TCGA-DA-A95Z-06 2 69577282 69577282 C T GFPT1 Missense_Mutation p.R258H 0.10 tolerated(0.15) possibly_damaging(0.84) TCGA-DA-A95Z-06 2 70922904 70922904 G A ADD2 Silent p.F168F 0.50 TCGA-DA-A95Z-06 2 71209782 71209782 G A ANKRD53 Silent p.K286K 0.23 TCGA-DA-A95Z-06 2 71591136 71591136 C T ZNF638 Missense_Mutation p.P491S 0.47 tolerated(0.33) benign(0.052) TCGA-DA-A95Z-06 2 71840535 71840535 A G DYSF Missense_Mutation p.I1487V 0.31 tolerated(0.44) benign(0.001) TCGA-DA-A95Z-06 2 71871101 71871101 G A DYSF Missense_Mutation p.E1512K 0.41 deleterious(0) possibly_damaging(0.666) TCGA-DA-A95Z-06 2 73470219 73470219 C T CCT7 Nonsense_Mutation p.Q119* 0.25 TCGA-DA-A95Z-06 2 73868324 73868324 C T NAT8 Silent p.V144V 0.21 TCGA-DA-A95Z-06 2 75917164 75917164 G A GCFC2 Missense_Mutation p.H424Y 0.69 deleterious(0.03) benign(0.037) TCGA-DA-A95Z-06 2 79350351 79350351 G A REG1A 3'UTR 0.15 TCGA-DA-A95Z-06 2 80875001 80875001 G A CTNNA2 3'UTR 0.52 TCGA-DA-A95Z-06 2 85280272 85280272 T C KCMF1 Silent p.L296L 0.25 TCGA-DA-A95Z-06 2 87049465 87049465 C T CD8B Intron 0.51 TCGA-DA-A95Z-06 2 89100820 89100820 G A ANKRD36BP2 RNA 0.68 TCGA-DA-A95Z-06 2 89513163 89513163 G A IGKV1-27 Silent p.S32S 0.19 TCGA-DA-A95Z-06 2 90248923 90248923 G A IGKV1D-43 Missense_Mutation p.D2N 0.27 deleterious_low_confidence(0.05) benign(0.062) TCGA-DA-A95Z-06 2 96523162 96523162 G A ANKRD36C Silent p.I352I 0.44 TCGA-DA-A95Z-06 2 99013408 99013408 C T CNGA3 Missense_Mutation p.P592L 0.61 deleterious(0) probably_damaging(0.969) TCGA-DA-A95Z-06 2 99013409 99013409 C T CNGA3 Silent p.P592P 0.60 TCGA-DA-A95Z-06 2 99170739 99170739 G A INPP4A Silent p.R456R 0.33 TCGA-DA-A95Z-06 2 99413826 99413826 G A KIAA1211L Missense_Mutation p.P864L 0.60 tolerated(0.08) benign(0.171) TCGA-DA-A95Z-06 2 99695141 99695141 C T TSGA10 Missense_Mutation p.G288E 0.43 tolerated(1) benign(0.003) TCGA-DA-A95Z-06 2 99811288 99811288 T A MRPL30 Silent p.V69V 0.34 TCGA-DA-A95Z-06 3 10028310 10028310 G T EMC3 Silent p.I12I 0.57 TCGA-DA-A95Z-06 3 10130135 10130135 T G FANCD2 Missense_Mutation p.S1157A 0.46 tolerated(0.07) benign(0.139) TCGA-DA-A95Z-06 3 102157434 102157434 C T ZPLD1 Missense_Mutation p.P51S 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-DA-A95Z-06 3 108074059 108074059 G A HHLA2 Nonsense_Mutation p.W172* 0.35 TCGA-DA-A95Z-06 3 108117970 108117970 C T MYH15 Silent p.Q1647Q 0.53 TCGA-DA-A95Z-06 3 108129532 108129532 C T MYH15 Missense_Mutation p.E1485K 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Z-06 3 108129745 108129745 C T MYH15 Missense_Mutation p.E1414K 0.29 deleterious(0.02) possibly_damaging(0.818) TCGA-DA-A95Z-06 3 108129775 108129775 C T MYH15 Missense_Mutation p.E1404K 0.56 tolerated(1) benign(0.001) TCGA-DA-A95Z-06 3 108682299 108682299 G A MORC1 Missense_Mutation p.R921C 0.52 deleterious(0.02) benign(0.063) TCGA-DA-A95Z-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.17 deleterious(0) possibly_damaging(0.906) TCGA-DA-A95Z-06 3 108776306 108776306 G A MORC1 Silent p.S353S 0.31 TCGA-DA-A95Z-06 3 11059649 11059649 C T SLC6A1 Missense_Mutation p.P120L 0.52 deleterious(0.02) possibly_damaging(0.521) TCGA-DA-A95Z-06 3 113115363 113115363 A T WDR52 Splice_Site p.X593_splice 0.23 TCGA-DA-A95Z-06 3 114057989 114057989 G A ZBTB20 Missense_Mutation p.P697S 0.52 tolerated_low_confidence(0.32) benign(0.043) TCGA-DA-A95Z-06 3 119348287 119348287 C T PLA1A Missense_Mutation p.S448F 0.56 tolerated(0.82) benign(0.005) TCGA-DA-A95Z-06 3 120973808 120973808 G A STXBP5L Missense_Mutation p.G503E 0.14 tolerated(0.54) benign(0.236) TCGA-DA-A95Z-06 3 120998780 120998780 G A STXBP5L Missense_Mutation p.R696Q 0.55 deleterious(0.04) probably_damaging(0.997) TCGA-DA-A95Z-06 3 121097564 121097564 C T STXBP5L Silent p.D750D 0.32 TCGA-DA-A95Z-06 3 121134797 121134797 T C STXBP5L Missense_Mutation p.F1094L 0.25 tolerated(1) benign(0.029) TCGA-DA-A95Z-06 3 121207658 121207658 G A POLQ Missense_Mutation p.P1374S 0.22 tolerated_low_confidence(0.77) benign(0.021) TCGA-DA-A95Z-06 3 121416176 121416176 A T GOLGB1 Missense_Mutation p.I1065N 0.59 benign(0.124) TCGA-DA-A95Z-06 3 121838284 121838284 G A CD86 Splice_Site p.X298_splice 0.31 TCGA-DA-A95Z-06 3 122278456 122278456 G A PARP9 Silent p.S4S 0.49 TCGA-DA-A95Z-06 3 122645468 122645468 C T SEMA5B Missense_Mutation p.E357K 0.65 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 3 122964795 122964795 C T SEC22A Silent p.I197I 0.32 TCGA-DA-A95Z-06 3 123419455 123419455 G A MYLK Missense_Mutation p.R954C 0.15 deleterious(0) benign(0.007) TCGA-DA-A95Z-06 3 124393232 124393232 G A KALRN Missense_Mutation p.G413R 0.21 deleterious(0) probably_damaging(0.985) TCGA-DA-A95Z-06 3 126224649 126224649 G A UROC1 Silent p.I236I 0.12 TCGA-DA-A95Z-06 3 126735370 126735370 C T PLXNA1 Missense_Mutation p.R1009C 0.54 deleterious(0.02) probably_damaging(0.912) TCGA-DA-A95Z-06 3 12856859 12856859 C T CAND2 Missense_Mutation p.P409L 0.28 tolerated(0.2) probably_damaging(0.928) TCGA-DA-A95Z-06 3 128614216 128614216 C T ACAD9 Missense_Mutation p.S137F 0.45 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Z-06 3 129268173 129268173 G A H1FOO Silent p.R236R 0.62 TCGA-DA-A95Z-06 3 130290100 130290100 G A COL6A6 Missense_Mutation p.G947E 0.62 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 3 130380680 130380680 G A COL6A6 Silent p.V2010V 0.54 TCGA-DA-A95Z-06 3 130380681 130380681 G A COL6A6 Missense_Mutation p.A2011T 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Z-06 3 130698200 130698200 A G ATP2C1 Missense_Mutation p.I594V 0.28 tolerated(0.53) benign(0.005) TCGA-DA-A95Z-06 3 134898711 134898711 G A EPHB1 Missense_Mutation p.G590E 0.61 tolerated(0.06) probably_damaging(0.984) TCGA-DA-A95Z-06 3 136699398 136699398 C T IL20RB Missense_Mutation p.P60L 0.23 tolerated(0.07) benign(0.022) TCGA-DA-A95Z-06 3 138256035 138256035 G A CEP70 Missense_Mutation p.T207I 0.24 deleterious(0) possibly_damaging(0.636) TCGA-DA-A95Z-06 3 141295889 141295889 C T RASA2 Missense_Mutation p.R511C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 3 14220171 14220171 C T LSM3 5'UTR 0.62 TCGA-DA-A95Z-06 3 142985612 142985612 C T SLC9A9 Missense_Mutation p.G624R 0.60 tolerated(0.49) probably_damaging(1) TCGA-DA-A95Z-06 3 148577730 148577730 G A CPB1 Missense_Mutation p.E399K 0.24 tolerated(0.8) possibly_damaging(0.521) TCGA-DA-A95Z-06 3 148875282 148875282 A G HPS3 Missense_Mutation p.K552R 0.26 tolerated(1) benign(0.004) TCGA-DA-A95Z-06 3 151161463 151161463 G A IGSF10 Missense_Mutation p.H1758Y 0.59 deleterious(0.03) benign(0.208) TCGA-DA-A95Z-06 3 153220347 153220347 T C C3orf79 3'UTR 0.71 TCGA-DA-A95Z-06 3 153842214 153842214 G A ARHGEF26 Missense_Mutation p.G367R 0.40 tolerated(0.24) benign(0.013) TCGA-DA-A95Z-06 3 154042099 154042099 G A DHX36 Missense_Mutation p.S36F 0.27 deleterious(0.04) possibly_damaging(0.485) TCGA-DA-A95Z-06 3 160150239 160150239 G A SMC4 Missense_Mutation p.G1156R 0.26 deleterious(0) probably_damaging(0.986) TCGA-DA-A95Z-06 3 160474387 160474387 C T PPM1L Silent p.S97S 0.33 TCGA-DA-A95Z-06 3 161214601 161214601 G A OTOL1 Nonsense_Mutation p.W2* 0.42 TCGA-DA-A95Z-06 3 164697154 164697154 G A SI Missense_Mutation p.S1827L 0.26 deleterious(0) benign(0.027) TCGA-DA-A95Z-06 3 164906488 164906488 C T SLITRK3 Missense_Mutation p.D711N 0.44 tolerated(0.76) benign(0.111) TCGA-DA-A95Z-06 3 165547793 165547793 G A BCHE Silent p.T343T 0.64 TCGA-DA-A95Z-06 3 166960340 166960340 G A ZBBX Silent p.F782F 0.35 TCGA-DA-A95Z-06 3 167159955 167159955 C T SERPINI2 Missense_Mutation p.G387E 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 3 167508183 167508183 G A SERPINI1 Missense_Mutation p.E92K 0.65 tolerated(0.3) benign(0.087) TCGA-DA-A95Z-06 3 169540186 169540186 G A LRRIQ4 Silent p.K159K 0.61 TCGA-DA-A95Z-06 3 169644597 169644597 C T SAMD7 Nonsense_Mutation p.R183* 0.52 TCGA-DA-A95Z-06 3 169664532 169664532 C T RP11-379K17.4 RNA 0.25 TCGA-DA-A95Z-06 3 17051893 17051893 C T PLCL2 Missense_Mutation p.S226L 0.46 deleterious(0) probably_damaging(0.99) TCGA-DA-A95Z-06 3 17053208 17053208 C T PLCL2 Silent p.I664I 0.23 TCGA-DA-A95Z-06 3 171405333 171405333 A G PLD1 Silent p.D527D 0.51 TCGA-DA-A95Z-06 3 178984544 178984544 C T KCNMB3 5'UTR 0.38 TCGA-DA-A95Z-06 3 180381700 180381700 C T CCDC39 Missense_Mutation p.M55I 0.26 deleterious(0.04) benign(0.063) TCGA-DA-A95Z-06 3 183508673 183508673 C T YEATS2 Missense_Mutation p.T1001I 0.23 deleterious_low_confidence(0.03) benign(0.013) TCGA-DA-A95Z-06 3 183824316 183824316 G A HTR3E Silent p.G428G 0.23 TCGA-DA-A95Z-06 3 184008054 184008054 T A ECE2 Silent p.S639S 0.25 TCGA-DA-A95Z-06 3 184573606 184573606 G A VPS8 Silent p.L381L 0.50 TCGA-DA-A95Z-06 3 187003788 187003788 G A MASP1 Missense_Mutation p.T21I 0.33 tolerated(0.19) benign(0.003) TCGA-DA-A95Z-06 3 187419807 187419807 G A RTP2 Missense_Mutation p.P37L 0.63 tolerated(0.06) benign(0.003) TCGA-DA-A95Z-06 3 187447764 187447764 G A BCL6 Silent p.F143F 0.30 TCGA-DA-A95Z-06 3 191861746 191861746 G A FGF12 3'UTR 0.53 TCGA-DA-A95Z-06 3 192973473 192973473 C T HRASLS Missense_Mutation p.P117S 0.35 deleterious(0.05) possibly_damaging(0.474) TCGA-DA-A95Z-06 3 193125169 193125169 G A ATP13A4 Missense_Mutation p.P1104L 0.51 deleterious(0.04) benign(0.079) TCGA-DA-A95Z-06 3 193220279 193220279 T A ATP13A4 Intron 0.50 TCGA-DA-A95Z-06 3 194063345 194063345 G A CPN2 Silent p.F29F 0.22 TCGA-DA-A95Z-06 3 195517680 195517680 G A MUC4 Silent p.S257S 0.31 TCGA-DA-A95Z-06 3 196434777 196434777 G A CEP19 Missense_Mutation p.T50I 0.57 tolerated(0.06) benign(0.004) TCGA-DA-A95Z-06 3 21462780 21462780 G A ZNF385D Missense_Mutation p.P372S 0.36 tolerated(0.49) probably_damaging(0.968) TCGA-DA-A95Z-06 3 25777583 25777584 GC A NGLY1 Frame_Shift_Del p.A354Yfs*14 0.36 TCGA-DA-A95Z-06 3 25832835 25832835 C T OXSM Silent p.S108S 0.27 TCGA-DA-A95Z-06 3 26751054 26751054 C T LRRC3B 5'UTR 0.21 TCGA-DA-A95Z-06 3 30769770 30769770 G A GADL1 Silent p.L510L 0.25 TCGA-DA-A95Z-06 3 30875754 30875754 G A GADL1 Missense_Mutation p.A308V 0.56 tolerated(1) benign(0.371) TCGA-DA-A95Z-06 3 3139952 3139952 C T IL5RA Silent p.V130V 0.23 TCGA-DA-A95Z-06 3 36780241 36780241 C T DCLK3 5'UTR 0.20 TCGA-DA-A95Z-06 3 37544707 37544707 G A ITGA9 Nonsense_Mutation p.W217* 0.36 TCGA-DA-A95Z-06 3 38350506 38350506 C T SLC22A14 Silent p.F279F 0.46 TCGA-DA-A95Z-06 3 38592212 38592212 G C SCN5A Missense_Mutation p.P1884R 0.16 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 3 38592643 38592643 C T SCN5A Silent p.G1740G 0.47 TCGA-DA-A95Z-06 3 38647489 38647489 C T SCN5A Missense_Mutation p.E431K 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-DA-A95Z-06 3 38739662 38739662 G A SCN10A Silent p.P1683P 0.29 TCGA-DA-A95Z-06 3 38802236 38802236 C T SCN10A Missense_Mutation p.D296N 0.49 tolerated(0.19) benign(0.012) TCGA-DA-A95Z-06 3 38889195 38889195 G A SCN11A Missense_Mutation p.P1456S 0.50 tolerated(0.43) benign(0.125) TCGA-DA-A95Z-06 3 38908899 38908899 G A SCN11A Silent p.F1288F 0.53 TCGA-DA-A95Z-06 3 39230274 39230274 G A XIRP1 Silent p.I221I 0.54 TCGA-DA-A95Z-06 3 405180 405180 A G CHL1 Intron 0.62 TCGA-DA-A95Z-06 3 40529250 40529250 G A ZNF619 Missense_Mutation p.V457M 0.32 tolerated(0.17) possibly_damaging(0.609) TCGA-DA-A95Z-06 3 42679496 42679496 G C NKTR Missense_Mutation p.S767T 0.65 tolerated_low_confidence(0.55) benign(0.012) TCGA-DA-A95Z-06 3 47467035 47467035 G A SCAP Missense_Mutation p.S326L 0.63 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 3 48613838 48613838 C T COL7A1 Missense_Mutation p.E1923K 0.30 unknown(0) TCGA-DA-A95Z-06 3 48670736 48670736 G A SLC26A6 Silent p.L90L 0.58 TCGA-DA-A95Z-06 3 49689905 49689905 G A BSN Silent p.E972E 0.60 TCGA-DA-A95Z-06 3 49722288 49722288 C T MST1 Nonsense_Mutation p.W551* 0.58 TCGA-DA-A95Z-06 3 49847733 49847733 C T UBA7 Silent p.V532V 0.55 TCGA-DA-A95Z-06 3 50219746 50219746 G A SEMA3F Missense_Mutation p.D225N 0.62 deleterious(0.01) probably_damaging(0.989) TCGA-DA-A95Z-06 3 5024543 5024543 C T BHLHE40 Silent p.V135V 0.57 TCGA-DA-A95Z-06 3 50252990 50252990 G A SLC38A3 RNA 0.53 TCGA-DA-A95Z-06 3 50381206 50381206 C T ZMYND10 Missense_Mutation p.E93K 0.54 tolerated(0.13) benign(0.005) TCGA-DA-A95Z-06 3 51370668 51370668 C A DOCK3 Missense_Mutation p.R1199S 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 3 51457690 51457690 G A VPRBP Missense_Mutation p.R483C 0.53 deleterious(0.04) possibly_damaging(0.784) TCGA-DA-A95Z-06 3 52256396 52256396 G A TLR9 Nonsense_Mutation p.Q800* 0.23 TCGA-DA-A95Z-06 3 52326352 52326352 C T GLYCTK Missense_Mutation p.S261F 0.59 tolerated(0.08) benign(0.263) TCGA-DA-A95Z-06 3 52476303 52476303 G A SEMA3G Silent p.F119F 0.47 TCGA-DA-A95Z-06 3 52840373 52840373 C T ITIH3 Silent p.I669I 0.60 TCGA-DA-A95Z-06 3 53810753 53810753 G A CACNA1D Missense_Mutation p.A1516T 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 3 54952415 54952415 G A LRTM1 3'UTR 0.60 TCGA-DA-A95Z-06 3 55052318 55052318 G A CACNA2D3 Silent p.G987G 0.64 TCGA-DA-A95Z-06 3 55108325 55108325 G A CACNA2D3 3'UTR 0.19 TCGA-DA-A95Z-06 3 56114870 56114870 C T ERC2 Missense_Mutation p.R539K 0.26 tolerated(0.05) probably_damaging(0.998) TCGA-DA-A95Z-06 3 56173665 56173665 C T ERC2 Missense_Mutation p.E449K 0.19 deleterious(0) probably_damaging(0.984) TCGA-DA-A95Z-06 3 56330265 56330265 C T ERC2 Missense_Mutation p.E286K 0.55 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 3 56683019 56683019 G A FAM208A Missense_Mutation p.P479S 0.23 tolerated(0.26) benign(0.076) TCGA-DA-A95Z-06 3 57232134 57232134 G A HESX1 3'UTR 0.36 TCGA-DA-A95Z-06 3 58109344 58109344 C T FLNB Silent p.P1217P 0.33 TCGA-DA-A95Z-06 3 58520861 58520861 G A ACOX2 5'UTR 0.32 TCGA-DA-A95Z-06 3 60522612 60522612 C T FHIT Silent p.R28R 0.52 TCGA-DA-A95Z-06 3 62478092 62478092 C T CADPS Silent p.V919V 0.58 TCGA-DA-A95Z-06 3 65342423 65342423 C T MAGI1 Missense_Mutation p.R1340K 0.53 tolerated(0.05) possibly_damaging(0.554) TCGA-DA-A95Z-06 3 71090545 71090545 G A FOXP1 Missense_Mutation p.S270F 0.27 deleterious(0) possibly_damaging(0.706) TCGA-DA-A95Z-06 3 7620317 7620317 G A GRM7 Missense_Mutation p.G575E 0.34 deleterious(0.01) benign(0.155) TCGA-DA-A95Z-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.60 deleterious(0) possibly_damaging(0.85) TCGA-DA-A95Z-06 3 77623816 77623816 G A ROBO2 Missense_Mutation p.R729Q 0.18 tolerated(0.25) possibly_damaging(0.602) TCGA-DA-A95Z-06 3 77645812 77645812 C T ROBO2 Missense_Mutation p.P938L 0.62 tolerated(0.11) possibly_damaging(0.713) TCGA-DA-A95Z-06 3 88041094 88041094 G A HTR1F 3'UTR 0.33 TCGA-DA-A95Z-06 3 96706620 96706620 G A EPHA6 Silent p.K299K 0.52 TCGA-DA-A95Z-06 3 97311570 97311570 G A EPHA6 Missense_Mutation p.R834K 0.48 tolerated_low_confidence(0.74) benign(0.007) TCGA-DA-A95Z-06 3 9798459 9798459 T A OGG1 Missense_Mutation p.F303I 0.61 deleterious(0.02) probably_damaging(0.975) TCGA-DA-A95Z-06 3 98002121 98002121 C T OR5H2 Silent p.A130A 0.59 TCGA-DA-A95Z-06 3 98216979 98216979 G A OR5K2 Missense_Mutation p.G152E 0.30 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 3 9877015 9877015 G A TTLL3 Missense_Mutation p.G864R 0.58 tolerated_low_confidence(0.82) benign(0) TCGA-DA-A95Z-06 4 103557118 103557118 G A MANBA Silent p.F687F 0.31 TCGA-DA-A95Z-06 4 109088996 109088996 C T LEF1 5'UTR 0.55 TCGA-DA-A95Z-06 4 111441447 111441447 G A ENPEP Missense_Mutation p.G551D 0.55 tolerated(0.68) benign(0.001) TCGA-DA-A95Z-06 4 115750951 115750951 G A NDST4 Missense_Mutation p.P832S 0.24 tolerated(0.91) benign(0) TCGA-DA-A95Z-06 4 115751004 115751004 C T NDST4 Missense_Mutation p.G814E 0.44 deleterious(0.02) benign(0.327) TCGA-DA-A95Z-06 4 119237426 119237426 C T PRSS12 Silent p.E401E 0.61 TCGA-DA-A95Z-06 4 119948482 119948482 C T SYNPO2 Missense_Mutation p.P320S 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-DA-A95Z-06 4 119951914 119951914 G A SYNPO2 Missense_Mutation p.D662N 0.64 tolerated(0.06) possibly_damaging(0.821) TCGA-DA-A95Z-06 4 121958528 121958528 G A NDNF Missense_Mutation p.P200S 0.32 tolerated(0.12) possibly_damaging(0.676) TCGA-DA-A95Z-06 4 1222049 1222049 C T CTBP1 Missense_Mutation p.R93H 0.49 deleterious(0.03) benign(0.026) TCGA-DA-A95Z-06 4 122590836 122590836 G A ANXA5 Missense_Mutation p.S275F 0.60 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 4 122833192 122833192 G A TRPC3 Silent p.F466F 0.63 TCGA-DA-A95Z-06 4 126398421 126398421 G A FAT4 Missense_Mutation p.M4135I 0.27 probably_damaging(0.977) TCGA-DA-A95Z-06 4 130023892 130023892 C A C4orf33 Missense_Mutation p.P43T 0.24 deleterious(0.04) possibly_damaging(0.474) TCGA-DA-A95Z-06 4 141331009 141331009 C T CLGN Missense_Mutation p.E87K 0.29 deleterious(0.03) possibly_damaging(0.598) TCGA-DA-A95Z-06 4 146560327 146560327 C T MMAA Silent p.F12F 0.34 TCGA-DA-A95Z-06 4 149356637 149356637 G A NR3C2 Missense_Mutation p.S459F 0.54 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-DA-A95Z-06 4 154335983 154335983 C T MND1 Missense_Mutation p.P198S 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 4 154626021 154626021 G A TLR2 Nonsense_Mutation p.W654* 0.53 TCGA-DA-A95Z-06 4 155156170 155156170 C T DCHS2 Missense_Mutation p.E2757K 0.56 tolerated(0.05) benign(0.427) TCGA-DA-A95Z-06 4 155506906 155506906 C T FGA Missense_Mutation p.E559K 0.56 tolerated(0.09) benign(0.258) TCGA-DA-A95Z-06 4 155670263 155670263 C T LRAT Missense_Mutation p.P223L 0.23 deleterious(0.02) benign(0.111) TCGA-DA-A95Z-06 4 156825263 156825263 G A TDO2 Silent p.G43G 0.49 TCGA-DA-A95Z-06 4 158281161 158281161 G A GRIA2 Silent p.G719G 0.56 TCGA-DA-A95Z-06 4 15937985 15937985 C T FGFBP1 Missense_Mutation p.E91K 0.38 tolerated(0.75) benign(0.071) TCGA-DA-A95Z-06 4 162307328 162307328 G A FSTL5 Silent p.Y705Y 0.32 TCGA-DA-A95Z-06 4 162376260 162376260 C T FSTL5 Silent p.G579G 0.57 TCGA-DA-A95Z-06 4 164246337 164246337 T A NPY1R 3'UTR 0.39 TCGA-DA-A95Z-06 4 164247579 164247579 A T NPY1R Nonsense_Mutation p.L43* 0.58 TCGA-DA-A95Z-06 4 165890732 165890732 C T TRIM61 Silent p.R141R 0.17 TCGA-DA-A95Z-06 4 165961405 165961405 C T TRIM60 Missense_Mutation p.P61S 0.57 tolerated(0.4) benign(0.066) TCGA-DA-A95Z-06 4 169158911 169158911 G C DDX60 Missense_Mutation p.F1400L 0.22 deleterious(0.02) benign(0.102) TCGA-DA-A95Z-06 4 169633053 169633053 C T PALLD Missense_Mutation p.P648L 0.13 deleterious(0) possibly_damaging(0.895) TCGA-DA-A95Z-06 4 170043270 170043270 G A SH3RF1 Missense_Mutation p.P443S 0.50 tolerated(0.52) benign(0.052) TCGA-DA-A95Z-06 4 170057771 170057771 A G SH3RF1 Missense_Mutation p.F256L 0.19 tolerated(1) benign(0.024) TCGA-DA-A95Z-06 4 175649754 175649754 G A GLRA3 Silent p.S121S 0.59 TCGA-DA-A95Z-06 4 175896721 175896721 C T ADAM29 Silent p.S15S 0.33 TCGA-DA-A95Z-06 4 175897170 175897170 G A ADAM29 Missense_Mutation p.G165E 0.50 deleterious(0.01) benign(0.411) TCGA-DA-A95Z-06 4 175897304 175897304 C T ADAM29 Silent p.L210L 0.48 TCGA-DA-A95Z-06 4 175897562 175897562 G A ADAM29 Missense_Mutation p.G296R 0.60 tolerated(0.25) benign(0.179) TCGA-DA-A95Z-06 4 183601864 183601864 G A TENM3 Missense_Mutation p.G603E 0.25 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Z-06 4 183721351 183721351 C T TENM3 Silent p.L2649L 0.60 TCGA-DA-A95Z-06 4 186084019 186084019 A G KIAA1430 Missense_Mutation p.V511A 0.57 tolerated(0.32) benign(0.021) TCGA-DA-A95Z-06 4 187194331 187194331 G A F11 Missense_Mutation p.A109T 0.32 deleterious(0.02) benign(0.013) TCGA-DA-A95Z-06 4 187194332 187194332 G A F11 Splice_Site p.X109_splice 0.32 TCGA-DA-A95Z-06 4 189012935 189012935 C T TRIML2 Silent p.G252G 0.24 TCGA-DA-A95Z-06 4 189026543 189026543 G A TRIML2 5'UTR 0.61 TCGA-DA-A95Z-06 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.31 deleterious(0) possibly_damaging(0.756) TCGA-DA-A95Z-06 4 22436955 22436955 G A GPR125 Silent p.T474T 0.54 TCGA-DA-A95Z-06 4 2306489 2306489 G A ZFYVE28 Silent p.S526S 0.24 TCGA-DA-A95Z-06 4 24578267 24578267 G A DHX15 Missense_Mutation p.R36W 0.61 deleterious_low_confidence(0.03) benign(0.037) TCGA-DA-A95Z-06 4 25005883 25005883 G A LGI2 Silent p.S276S 0.60 TCGA-DA-A95Z-06 4 25676142 25676142 C G SLC34A2 Missense_Mutation p.T450S 0.27 tolerated(1) benign(0.004) TCGA-DA-A95Z-06 4 25849357 25849357 C T SEL1L3 Missense_Mutation p.E98K 0.58 tolerated(0.66) benign(0.011) TCGA-DA-A95Z-06 4 2831254 2831254 C T SH3BP2 Silent p.P264P 0.47 TCGA-DA-A95Z-06 4 3201575 3201575 C T HTT Missense_Mutation p.H1829Y 0.60 benign(0.008) TCGA-DA-A95Z-06 4 38776186 38776186 A G TLR10 Silent p.L342L 0.26 TCGA-DA-A95Z-06 4 38798172 38798172 C T TLR1 Missense_Mutation p.E761K 0.55 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 4 40245640 40245640 G A RHOH 3'UTR 0.62 TCGA-DA-A95Z-06 4 44176701 44176701 G A KCTD8 3'UTR 0.56 TCGA-DA-A95Z-06 4 47408703 47408703 C T GABRB1 Silent p.I280I 0.48 TCGA-DA-A95Z-06 4 48073549 48073549 G T TXK Nonsense_Mutation p.Y500* 0.30 TCGA-DA-A95Z-06 4 48542539 48542539 C T FRYL Silent p.E2042E 0.31 TCGA-DA-A95Z-06 4 48542726 48542726 G A FRYL Missense_Mutation p.S1980F 0.55 deleterious(0.01) possibly_damaging(0.864) TCGA-DA-A95Z-06 4 52860618 52860618 G A LRRC66 Missense_Mutation p.P857L 0.28 deleterious(0) benign(0.396) TCGA-DA-A95Z-06 4 53332 53332 G A ZNF595 5'UTR 0.09 TCGA-DA-A95Z-06 4 53333 53333 G A ZNF595 5'UTR 0.09 TCGA-DA-A95Z-06 4 55139768 55139768 C T PDGFRA Missense_Mutation p.H477Y 0.57 tolerated(0.3) benign(0.001) TCGA-DA-A95Z-06 4 5843132 5843132 C T CRMP1 Silent p.R352R 0.27 TCGA-DA-A95Z-06 4 5843133 5843133 C T CRMP1 Missense_Mutation p.R352Q 0.26 deleterious(0) probably_damaging(0.947) TCGA-DA-A95Z-06 4 65180405 65180405 C T TECRL Missense_Mutation p.G171E 0.64 tolerated(1) benign(0) TCGA-DA-A95Z-06 4 68512442 68512442 C A UBA6 Missense_Mutation p.R439L 0.49 tolerated(0.13) benign(0.09) TCGA-DA-A95Z-06 4 69189910 69189910 G C YTHDC1 Missense_Mutation p.L461V 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-DA-A95Z-06 4 69433643 69433643 C T UGT2B17 Missense_Mutation p.G187E 0.90 deleterious(0.04) benign(0.258) TCGA-DA-A95Z-06 4 69817331 69817331 C T UGT2A3 Missense_Mutation p.G50S 0.31 deleterious(0.01) possibly_damaging(0.461) TCGA-DA-A95Z-06 4 70078376 70078376 C T UGT2B11 Nonsense_Mutation p.W262* 0.59 TCGA-DA-A95Z-06 4 7026840 7026840 C T TBC1D14 Silent p.L623L 0.61 TCGA-DA-A95Z-06 4 70361605 70361605 C T UGT2B4 5'UTR 0.56 TCGA-DA-A95Z-06 4 71200802 71200802 G A CABS1 Missense_Mutation p.E16K 0.64 deleterious(0.01) benign(0.031) TCGA-DA-A95Z-06 4 71201041 71201041 A T CABS1 Missense_Mutation p.E95D 0.56 tolerated(0.11) benign(0.002) TCGA-DA-A95Z-06 4 71255542 71255542 C T SMR3B Missense_Mutation p.P73S 0.26 unknown(0) TCGA-DA-A95Z-06 4 71347105 71347105 C T MUC7 Missense_Mutation p.P215L 0.53 deleterious(0.01) unknown(0) TCGA-DA-A95Z-06 4 72205076 72205076 C T SLC4A4 Intron 0.23 TCGA-DA-A95Z-06 4 74008365 74008365 G A ANKRD17 Missense_Mutation p.R693C 0.49 probably_damaging(0.999) TCGA-DA-A95Z-06 4 74313179 74313179 G A AFP Missense_Mutation p.E282K 0.56 tolerated(0.28) benign(0.026) TCGA-DA-A95Z-06 4 74357737 74357737 G A AFM Missense_Mutation p.G331E 0.57 tolerated(1) benign(0.003) TCGA-DA-A95Z-06 4 74719057 74719057 C T PF4V1 5'UTR 0.21 TCGA-DA-A95Z-06 4 75167517 75167517 C T MTHFD2L Silent p.I345I 0.48 TCGA-DA-A95Z-06 4 77244532 77244532 C T CCDC158 Missense_Mutation p.G1063E 0.51 tolerated(0.39) probably_damaging(0.999) TCGA-DA-A95Z-06 4 77660201 77660201 G A SHROOM3 Missense_Mutation p.R292Q 0.46 tolerated(0.2) benign(0.058) TCGA-DA-A95Z-06 4 77817281 77817281 C T SOWAHB Silent p.G574G 0.29 TCGA-DA-A95Z-06 4 79462201 79462201 T C FRAS1 Missense_Mutation p.F3988L 0.48 benign(0.001) TCGA-DA-A95Z-06 4 79507429 79507429 G A ANXA3 Missense_Mutation p.E110K 0.33 deleterious(0) probably_damaging(0.986) TCGA-DA-A95Z-06 4 82061776 82061776 C T PRKG2 Silent p.R485R 0.66 TCGA-DA-A95Z-06 4 82090825 82090825 G A PRKG2 Silent p.F280F 0.49 TCGA-DA-A95Z-06 4 845554 845554 G A GAK Silent p.V1164V 0.45 TCGA-DA-A95Z-06 4 85738738 85738738 C T WDFY3 Missense_Mutation p.G565E 0.27 tolerated(0.19) benign(0.045) TCGA-DA-A95Z-06 4 87701565 87701565 C T PTPN13 Missense_Mutation p.P1973S 0.35 deleterious(0) probably_damaging(0.953) TCGA-DA-A95Z-06 4 88258330 88258330 G A HSD17B11 3'UTR 0.30 TCGA-DA-A95Z-06 4 88767368 88767368 G A MEPE Missense_Mutation p.E450K 0.20 tolerated(0.16) benign(0.027) TCGA-DA-A95Z-06 4 90857139 90857139 G A MMRN1 Missense_Mutation p.E770K 0.59 tolerated(0.19) benign(0.005) TCGA-DA-A95Z-06 4 94138218 94138218 G A GRID2 Intron 0.25 TCGA-DA-A95Z-06 4 94547430 94547430 G A GRID2 Missense_Mutation p.G735E 0.26 tolerated(0.17) benign(0.19) TCGA-DA-A95Z-06 4 9828130 9828130 C T SLC2A9 Missense_Mutation p.R505K 0.54 tolerated(1) benign(0.035) TCGA-DA-A95Z-06 5 101834687 101834687 C T SLCO6A1 5'UTR 0.36 TCGA-DA-A95Z-06 5 112769552 112769552 C T TSSK1B Missense_Mutation p.E329K 0.35 tolerated_low_confidence(0.1) benign(0.002) TCGA-DA-A95Z-06 5 120021854 120021854 C T PRR16 Missense_Mutation p.P99L 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A95Z-06 5 121786824 121786824 C T SNCAIP Missense_Mutation p.S761F 0.40 tolerated(0.09) benign(0.005) TCGA-DA-A95Z-06 5 1244767 1244767 C T SLC6A18 Missense_Mutation p.P514L 0.48 tolerated(1) benign(0.002) TCGA-DA-A95Z-06 5 126771089 126771089 G A MEGF10 Missense_Mutation p.G671E 0.41 tolerated(1) benign(0.421) TCGA-DA-A95Z-06 5 127664310 127664310 C G FBN2 Intron 0.39 TCGA-DA-A95Z-06 5 135388704 135388704 G A TGFBI Missense_Mutation p.G341E 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 5 135692628 135692628 C T TRPC7 Missense_Mutation p.D150N 0.50 tolerated(0.08) benign(0.388) TCGA-DA-A95Z-06 5 13737373 13737373 C T DNAH5 Missense_Mutation p.E3815K 0.27 benign(0.292) TCGA-DA-A95Z-06 5 13751280 13751280 C T DNAH5 Silent p.E3706E 0.54 TCGA-DA-A95Z-06 5 13753547 13753547 G A DNAH5 Missense_Mutation p.P3556L 0.28 possibly_damaging(0.713) TCGA-DA-A95Z-06 5 137680715 137680715 C T FAM53C Missense_Mutation p.P113L 0.40 deleterious(0) probably_damaging(0.958) TCGA-DA-A95Z-06 5 137727379 137727379 A G KDM3B Silent p.L686L 0.38 TCGA-DA-A95Z-06 5 137780508 137780508 G A REEP2 Silent p.K123K 0.45 TCGA-DA-A95Z-06 5 13794146 13794146 C T DNAH5 Missense_Mutation p.D2637N 0.19 possibly_damaging(0.822) TCGA-DA-A95Z-06 5 138644005 138644005 C T MATR3 Missense_Mutation p.H301Y 0.43 deleterious(0) benign(0.388) TCGA-DA-A95Z-06 5 13864556 13864557 AC G DNAH5 Frame_Shift_Del p.K1515Nfs*2 0.11 TCGA-DA-A95Z-06 5 13864652 13864652 C A DNAH5 Nonsense_Mutation p.E1484* 0.24 TCGA-DA-A95Z-06 5 13922352 13922352 G A DNAH5 Missense_Mutation p.A175V 0.22 possibly_damaging(0.483) TCGA-DA-A95Z-06 5 140022001 140022001 C T TMCO6 Silent p.I200I 0.41 TCGA-DA-A95Z-06 5 140167698 140167698 C T PCDHA1 Missense_Mutation p.S608F 0.43 tolerated_low_confidence(0.08) probably_damaging(0.975) TCGA-DA-A95Z-06 5 140176086 140176086 G A PCDHA2 Missense_Mutation p.E513K 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.774) TCGA-DA-A95Z-06 5 140348412 140348412 C T PCDHAC2 Silent p.I687I 0.37 TCGA-DA-A95Z-06 5 140474363 140474363 G A PCDHB2 5'UTR 0.49 TCGA-DA-A95Z-06 5 140517365 140517365 G A PCDHB5 Silent p.G783G 0.42 TCGA-DA-A95Z-06 5 140537568 140537568 G A PCDHB17 3'UTR 0.45 TCGA-DA-A95Z-06 5 140553335 140553335 T G PCDHB7 Missense_Mutation p.L307V 0.46 tolerated_low_confidence(0.12) benign(0.303) TCGA-DA-A95Z-06 5 140554769 140554769 C T PCDHB7 Missense_Mutation p.R785C 0.08 deleterious_low_confidence(0.02) benign(0.052) TCGA-DA-A95Z-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.09 tolerated_low_confidence(0.62) benign(0) TCGA-DA-A95Z-06 5 140558076 140558076 C T PCDHB8 Missense_Mutation p.P154L 0.11 tolerated_low_confidence(0.5) benign(0.007) TCGA-DA-A95Z-06 5 140558206 140558206 G A PCDHB8 Silent p.L197L 0.09 TCGA-DA-A95Z-06 5 140558702 140558702 G A PCDHB8 Missense_Mutation p.E363K 0.09 deleterious_low_confidence(0.01) benign(0.158) TCGA-DA-A95Z-06 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.51 tolerated_low_confidence(0.23) benign(0.002) TCGA-DA-A95Z-06 5 1406383 1406383 C T SLC6A3 Missense_Mutation p.D507N 0.55 tolerated(0.06) benign(0.323) TCGA-DA-A95Z-06 5 140698923 140698923 C T TAF7 Missense_Mutation p.S230N 0.22 tolerated(0.17) probably_damaging(0.972) TCGA-DA-A95Z-06 5 140764739 140764739 C T PCDHGA7 Missense_Mutation p.S758F 0.46 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DA-A95Z-06 5 140773459 140773459 C T PCDHGA8 Missense_Mutation p.S360F 0.40 tolerated_low_confidence(0.14) benign(0.204) TCGA-DA-A95Z-06 5 141050106 141050106 G A ARAP3 Missense_Mutation p.P694S 0.39 tolerated(0.66) benign(0.11) TCGA-DA-A95Z-06 5 141387386 141387386 G A GNPDA1 Silent p.T68T 0.27 TCGA-DA-A95Z-06 5 142258985 142258985 G A ARHGAP26 Missense_Mutation p.R120Q 0.42 deleterious(0) possibly_damaging(0.553) TCGA-DA-A95Z-06 5 145252477 145252477 C G GRXCR2 Missense_Mutation p.V19L 0.14 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 5 145317476 145317476 G A SH3RF2 5'UTR 0.50 TCGA-DA-A95Z-06 5 145317477 145317477 G A SH3RF2 5'UTR 0.51 TCGA-DA-A95Z-06 5 145393508 145393508 C T SH3RF2 Missense_Mutation p.P315S 0.44 tolerated(0.15) possibly_damaging(0.601) TCGA-DA-A95Z-06 5 145887474 145887474 C T TCERG1 Silent p.I983I 0.54 TCGA-DA-A95Z-06 5 145979960 145979960 G A PPP2R2B Missense_Mutation p.S288L 0.37 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Z-06 5 146236070 146236070 C T PPP2R2B Intron 0.39 TCGA-DA-A95Z-06 5 146780290 146780290 C A DPYSL3 Nonsense_Mutation p.E473* 0.23 TCGA-DA-A95Z-06 5 147813069 147813069 C T FBXO38 Silent p.I837I 0.47 TCGA-DA-A95Z-06 5 147830804 147830804 C T HTR4 Missense_Mutation p.E370K 0.42 tolerated_low_confidence(0.09) benign(0.001) TCGA-DA-A95Z-06 5 148207592 148207592 G A ADRB2 Missense_Mutation p.D400N 0.39 tolerated(0.16) benign(0.006) TCGA-DA-A95Z-06 5 149433650 149433650 G T CSF1R Missense_Mutation p.N967K 0.43 deleterious(0) possibly_damaging(0.728) TCGA-DA-A95Z-06 5 149497311 149497311 C T PDGFRB Missense_Mutation p.D1003N 0.45 tolerated(0.11) benign(0.014) TCGA-DA-A95Z-06 5 149497312 149497312 C T PDGFRB Silent p.L1002L 0.47 TCGA-DA-A95Z-06 5 149500492 149500492 G A PDGFRB Nonsense_Mutation p.R849* 0.43 TCGA-DA-A95Z-06 5 149512336 149512336 G A PDGFRB Silent p.S368S 0.40 TCGA-DA-A95Z-06 5 149574333 149574333 G A SLC6A7 Missense_Mutation p.D26N 0.47 tolerated(0.23) benign(0.002) TCGA-DA-A95Z-06 5 151784666 151784666 C T NMUR2 Silent p.G3G 0.44 TCGA-DA-A95Z-06 5 153149822 153149822 G A GRIA1 Missense_Mutation p.R716Q 0.47 deleterious(0) possibly_damaging(0.686) TCGA-DA-A95Z-06 5 156346439 156346439 C T TIMD4 3'UTR 0.45 TCGA-DA-A95Z-06 5 156485057 156485057 C T HAVCR1 5'UTR 0.30 TCGA-DA-A95Z-06 5 156589596 156589596 G A FAM71B Silent p.I560I 0.39 TCGA-DA-A95Z-06 5 156638340 156638340 C T ITK Missense_Mutation p.R96C 0.44 deleterious(0.02) benign(0.001) TCGA-DA-A95Z-06 5 156741425 156741425 G A CYFIP2 Missense_Mutation p.R369Q 0.41 tolerated(0.47) benign(0.015) TCGA-DA-A95Z-06 5 156899974 156899974 G T NIPAL4 3'UTR 0.44 TCGA-DA-A95Z-06 5 157158395 157158395 G A THG1L 5'UTR 0.35 TCGA-DA-A95Z-06 5 158140060 158140060 G C EBF1 Silent p.V429V 0.51 TCGA-DA-A95Z-06 5 160049482 160049482 G A ATP10B Silent p.T577T 0.57 TCGA-DA-A95Z-06 5 160721399 160721399 C T GABRB2 Missense_Mutation p.E410K 0.35 tolerated(0.12) benign(0.248) TCGA-DA-A95Z-06 5 161116676 161116676 G A GABRA6 Nonsense_Mutation p.W188* 0.31 TCGA-DA-A95Z-06 5 161119083 161119083 C T GABRA6 Silent p.F321F 0.40 TCGA-DA-A95Z-06 5 167182082 167182082 C T TENM2 Intron 0.45 TCGA-DA-A95Z-06 5 167517597 167517597 C T TENM2 Silent p.L512L 0.16 TCGA-DA-A95Z-06 5 167545407 167545407 G A TENM2 Missense_Mutation p.D642N 0.41 tolerated(0.12) probably_damaging(0.932) TCGA-DA-A95Z-06 5 167589733 167589733 C T TENM2 Missense_Mutation p.S847F 0.51 tolerated(0.05) benign(0.258) TCGA-DA-A95Z-06 5 167617375 167617375 G A TENM2 Missense_Mutation p.C868Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 5 168100228 168100228 G A SLIT3 Silent p.L1265L 0.54 TCGA-DA-A95Z-06 5 168199933 168199933 G A SLIT3 Missense_Mutation p.P438S 0.39 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 5 170632598 170632598 C T RANBP17 Missense_Mutation p.T738I 0.32 tolerated(0.11) probably_damaging(0.991) TCGA-DA-A95Z-06 5 172659541 172659541 C T NKX2-5 3'UTR 0.28 TCGA-DA-A95Z-06 5 173317321 173317321 C T CPEB4 Silent p.V195V 0.49 TCGA-DA-A95Z-06 5 175572081 175572081 C T RP11-844P9.2 RNA 0.29 TCGA-DA-A95Z-06 5 175782706 175782706 C T KIAA1191 Silent p.G25G 0.40 TCGA-DA-A95Z-06 5 176932034 176932034 G A DOK3 Silent p.S206S 0.49 TCGA-DA-A95Z-06 5 176932035 176932035 G A DOK3 Missense_Mutation p.S206F 0.50 deleterious(0) probably_damaging(0.935) TCGA-DA-A95Z-06 5 177021263 177021263 C T TMED9 Nonsense_Mutation p.Q179* 0.40 TCGA-DA-A95Z-06 5 177665661 177665661 C T COL23A1 3'UTR 0.42 TCGA-DA-A95Z-06 5 179290628 179290628 G A TBC1D9B Silent p.T1191T 0.35 TCGA-DA-A95Z-06 5 179290629 179290629 G A TBC1D9B Missense_Mutation p.T1191I 0.36 deleterious_low_confidence(0.01) benign(0.036) TCGA-DA-A95Z-06 5 180335659 180335659 C T BTNL8 Silent p.F41F 0.48 TCGA-DA-A95Z-06 5 180377238 180377238 C T BTNL8 Silent p.F399F 0.45 TCGA-DA-A95Z-06 5 180664711 180664711 C T GNB2L1 Silent p.E262E 0.43 TCGA-DA-A95Z-06 5 1878396 1878396 A T IRX4 Missense_Mutation p.V416E 0.54 tolerated(0.57) benign(0.014) TCGA-DA-A95Z-06 5 23509665 23509665 G A PRDM9 Silent p.R52R 0.26 TCGA-DA-A95Z-06 5 23522871 23522871 C T PRDM9 Silent p.I253I 0.67 TCGA-DA-A95Z-06 5 24511541 24511541 C T CDH10 Silent p.G299G 0.28 TCGA-DA-A95Z-06 5 24537657 24537657 C T CDH10 Missense_Mutation p.E120K 0.62 deleterious(0) probably_damaging(0.933) TCGA-DA-A95Z-06 5 26881165 26881165 C T CDH9 3'UTR 0.35 TCGA-DA-A95Z-06 5 26906080 26906080 G A CDH9 Nonsense_Mutation p.R267* 0.25 TCGA-DA-A95Z-06 5 26988352 26988352 C T CDH9 Missense_Mutation p.S30N 0.34 tolerated(0.42) benign(0) TCGA-DA-A95Z-06 5 31294287 31294287 C T CDH6 Silent p.I149I 0.51 TCGA-DA-A95Z-06 5 31318060 31318060 C T CDH6 Intron 0.41 TCGA-DA-A95Z-06 5 35084604 35084604 G A PRLR Missense_Mutation p.S114L 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 5 35776457 35776457 G A SPEF2 Missense_Mutation p.E1393K 0.55 deleterious(0) possibly_damaging(0.534) TCGA-DA-A95Z-06 5 35873660 35873660 C T IL7R Nonsense_Mutation p.R206* 0.61 TCGA-DA-A95Z-06 5 35910588 35910588 C T CAPSL Missense_Mutation p.M65I 0.54 tolerated(0.23) benign(0) TCGA-DA-A95Z-06 5 38370407 38370407 C T EGFLAM Silent p.F185F 0.53 TCGA-DA-A95Z-06 5 38952411 38952411 G A RICTOR Missense_Mutation p.P1005L 0.29 deleterious(0.01) possibly_damaging(0.809) TCGA-DA-A95Z-06 5 40854208 40854208 C T CARD6 Missense_Mutation p.S925L 0.60 tolerated(0.05) benign(0.085) TCGA-DA-A95Z-06 5 40936549 40936549 C T C7 Silent p.I130I 0.55 TCGA-DA-A95Z-06 5 40947853 40947853 C T C7 Silent p.I296I 0.31 TCGA-DA-A95Z-06 5 40972613 40972613 C T C7 Missense_Mutation p.S664F 0.34 tolerated(0.71) benign(0.053) TCGA-DA-A95Z-06 5 41012789 41012789 C T MROH2B Missense_Mutation p.E1011K 0.59 tolerated(0.09) possibly_damaging(0.754) TCGA-DA-A95Z-06 5 41057214 41057214 G A MROH2B Silent p.L306L 0.62 TCGA-DA-A95Z-06 5 41159246 41159246 C T C6 Silent p.G598G 0.26 TCGA-DA-A95Z-06 5 41195973 41195973 C T C6 Missense_Mutation p.E170K 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 5 42718854 42718854 G A GHR Silent p.Q415Q 0.26 TCGA-DA-A95Z-06 5 42719657 42719657 C T GHR 3'UTR 0.31 TCGA-DA-A95Z-06 5 43280454 43280454 G A NIM1K Missense_Mutation p.E312K 0.63 deleterious(0.02) benign(0.007) TCGA-DA-A95Z-06 5 45396787 45396787 G A HCN1 Missense_Mutation p.S346L 0.31 deleterious(0) possibly_damaging(0.489) TCGA-DA-A95Z-06 5 477550 477550 G A SLC9A3 Missense_Mutation p.R553C 0.82 deleterious(0.01) probably_damaging(0.953) TCGA-DA-A95Z-06 5 54327310 54327310 C T GZMK Missense_Mutation p.S161L 0.59 tolerated(0.87) benign(0) TCGA-DA-A95Z-06 5 54581572 54581572 G A DHX29 Missense_Mutation p.P395L 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-DA-A95Z-06 5 54581573 54581573 G C DHX29 Missense_Mutation p.P395A 0.28 deleterious(0.05) possibly_damaging(0.849) TCGA-DA-A95Z-06 5 64483962 64483962 C T ADAMTS6 Missense_Mutation p.G931R 0.29 deleterious(0.03) benign(0.313) TCGA-DA-A95Z-06 5 66400254 66400254 G T MAST4 Missense_Mutation p.V403F 0.59 probably_damaging(0.963) TCGA-DA-A95Z-06 5 68715530 68715530 C T MARVELD2 Silent p.I106I 0.24 TCGA-DA-A95Z-06 5 75967596 75967596 C T IQGAP2 Silent p.D952D 0.52 TCGA-DA-A95Z-06 5 76003109 76003109 C T IQGAP2 Silent p.L1567L 0.20 TCGA-DA-A95Z-06 5 78328556 78328556 C T DMGDH Missense_Mutation p.E491K 0.26 deleterious(0) probably_damaging(0.967) TCGA-DA-A95Z-06 5 78671958 78671958 C T HOMER1 Silent p.E313E 0.25 TCGA-DA-A95Z-06 5 80476040 80476040 G A RASGRF2 Silent p.R911R 0.67 TCGA-DA-A95Z-06 5 82837813 82837813 G A VCAN Silent p.Q2997Q 0.55 TCGA-DA-A95Z-06 5 90136503 90136503 A C GPR98 Missense_Mutation p.S5574R 0.46 benign(0.003) TCGA-DA-A95Z-06 5 9108338 9108338 C T SEMA5A Missense_Mutation p.E663K 0.32 tolerated(0.12) possibly_damaging(0.472) TCGA-DA-A95Z-06 5 95018690 95018690 C T SPATA9 5'UTR 0.70 TCGA-DA-A95Z-06 6 105198246 105198246 G A HACE1 Silent p.S771S 0.35 TCGA-DA-A95Z-06 6 106969006 106969006 C T AIM1 Missense_Mutation p.S900F 0.37 tolerated(0.14) benign(0.01) TCGA-DA-A95Z-06 6 107475713 107475713 G A PDSS2 3'UTR 0.33 TCGA-DA-A95Z-06 6 107955350 107955350 C T SOBP Silent p.I434I 0.43 TCGA-DA-A95Z-06 6 108066280 108066280 G A SCML4 Silent p.V185V 0.36 TCGA-DA-A95Z-06 6 109962801 109962801 T C AK9 Missense_Mutation p.K285E 0.33 tolerated(0.57) benign(0.013) TCGA-DA-A95Z-06 6 110778165 110778165 G A SLC22A16 Missense_Mutation p.H37Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 6 111701410 111701410 G A REV3L Missense_Mutation p.P410L 0.42 tolerated(0.33) benign(0.001) TCGA-DA-A95Z-06 6 114379287 114379287 G A HS3ST5 Missense_Mutation p.R59C 0.25 deleterious(0) possibly_damaging(0.641) TCGA-DA-A95Z-06 6 116757091 116757091 C T DSE Missense_Mutation p.S487F 0.38 deleterious(0.01) benign(0.23) TCGA-DA-A95Z-06 6 116938460 116938460 C T RSPH4A Missense_Mutation p.S225L 0.39 deleterious(0.01) benign(0.196) TCGA-DA-A95Z-06 6 117246737 117246737 C T RFX6 Silent p.L600L 0.37 TCGA-DA-A95Z-06 6 117249965 117249965 C T RFX6 Silent p.L814L 0.39 TCGA-DA-A95Z-06 6 117250076 117250076 G A RFX6 Silent p.Q851Q 0.26 TCGA-DA-A95Z-06 6 117589349 117589349 T C VGLL2 Missense_Mutation p.L29P 0.37 deleterious(0) probably_damaging(0.976) TCGA-DA-A95Z-06 6 117609901 117609901 C T ROS1 Silent p.T2266T 0.41 TCGA-DA-A95Z-06 6 117709190 117709190 G A ROS1 Silent p.I589I 0.50 TCGA-DA-A95Z-06 6 119301330 119301330 C T FAM184A Missense_Mutation p.M758I 0.34 deleterious(0.03) possibly_damaging(0.511) TCGA-DA-A95Z-06 6 119522476 119522476 T A MAN1A1 Nonsense_Mutation p.K385* 0.32 TCGA-DA-A95Z-06 6 123653030 123653030 C T TRDN Missense_Mutation p.E489K 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-DA-A95Z-06 6 128134909 128134909 C T THEMIS Missense_Mutation p.G293R 0.34 deleterious(0.05) benign(0.117) TCGA-DA-A95Z-06 6 128222067 128222067 G A THEMIS Missense_Mutation p.S4L 0.38 deleterious(0.02) possibly_damaging(0.814) TCGA-DA-A95Z-06 6 128403784 128403784 C T PTPRK Splice_Site p.X526_splice 0.48 TCGA-DA-A95Z-06 6 129371140 129371140 G A LAMA2 Missense_Mutation p.E64K 0.52 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 129649548 129649548 G A LAMA2 Silent p.S1434S 0.38 TCGA-DA-A95Z-06 6 129714245 129714245 G A LAMA2 Missense_Mutation p.E1764K 0.39 tolerated(0.92) benign(0) TCGA-DA-A95Z-06 6 133044203 133044203 G A VNN3 Intron 0.54 TCGA-DA-A95Z-06 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.43 tolerated(0.18) benign(0.001) TCGA-DA-A95Z-06 6 133595950 133595950 C T EYA4 Missense_Mutation p.S11L 0.43 deleterious_low_confidence(0.02) benign(0.009) TCGA-DA-A95Z-06 6 134210519 134210519 C T TCF21 5'UTR 0.33 TCGA-DA-A95Z-06 6 136590668 136590668 C T BCLAF1 Missense_Mutation p.G709E 0.10 tolerated(0.24) probably_damaging(0.969) TCGA-DA-A95Z-06 6 136597494 136597494 C T BCLAF1 Missense_Mutation p.G390E 0.11 tolerated(0.92) benign(0.165) TCGA-DA-A95Z-06 6 137528181 137528181 T C IFNGR1 Missense_Mutation p.Y40C 0.42 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 6 138576619 138576619 C T KIAA1244 Missense_Mutation p.H273Y 0.36 tolerated(0.3) benign(0.065) TCGA-DA-A95Z-06 6 138584427 138584427 C T KIAA1244 Missense_Mutation p.L603F 0.37 deleterious(0.04) benign(0.027) TCGA-DA-A95Z-06 6 139203933 139203933 G A ECT2L Silent p.T651T 0.39 TCGA-DA-A95Z-06 6 139564019 139564019 C T TXLNB Missense_Mutation p.G567R 0.26 tolerated_low_confidence(0.13) benign(0.007) TCGA-DA-A95Z-06 6 144863953 144863953 C T UTRN Missense_Mutation p.T2181I 0.35 tolerated(0.2) benign(0) TCGA-DA-A95Z-06 6 144863954 144863954 C T UTRN Silent p.T2181T 0.35 TCGA-DA-A95Z-06 6 146350524 146350524 G A GRM1 5'UTR 0.56 TCGA-DA-A95Z-06 6 147124050 147124050 G A ADGB Intron 0.35 TCGA-DA-A95Z-06 6 149795562 149795562 G A ZC3H12D Missense_Mutation p.L40F 0.48 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 6 150001132 150001132 A C LATS1 Missense_Mutation p.F824L 0.47 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 6 152461156 152461156 A G SYNE1 Silent p.L8463L 0.35 TCGA-DA-A95Z-06 6 152832728 152832728 T C SYNE1 Intron 0.39 TCGA-DA-A95Z-06 6 153043051 153043051 G A MYCT1 Missense_Mutation p.G124E 0.36 tolerated(0.08) probably_damaging(1) TCGA-DA-A95Z-06 6 154412090 154412090 C T OPRM1 Missense_Mutation p.S309F 0.36 tolerated(0.1) possibly_damaging(0.496) TCGA-DA-A95Z-06 6 154521050 154521050 G A IPCEF1 Missense_Mutation p.S221F 0.36 deleterious(0) probably_damaging(0.979) TCGA-DA-A95Z-06 6 158613056 158613056 C T GTF2H5 Missense_Mutation p.A28V 0.47 tolerated(0.13) benign(0.091) TCGA-DA-A95Z-06 6 161007648 161007648 T C LPA Missense_Mutation p.N1321S 0.38 deleterious(0) probably_damaging(0.936) TCGA-DA-A95Z-06 6 165809833 165809833 G A PDE10A Missense_Mutation p.P465L 0.32 deleterious(0.03) possibly_damaging(0.816) TCGA-DA-A95Z-06 6 166571706 166571706 C T T 3'UTR 0.45 TCGA-DA-A95Z-06 6 168479636 168479636 C T FRMD1 Missense_Mutation p.D47N 0.47 tolerated(0.95) benign(0.001) TCGA-DA-A95Z-06 6 24429320 24429320 C T GPLD1 Silent p.R821R 0.17 TCGA-DA-A95Z-06 6 24429321 24429321 C T GPLD1 Missense_Mutation p.R821K 0.17 tolerated(0.06) benign(0.025) TCGA-DA-A95Z-06 6 24450118 24450118 G A GPLD1 Missense_Mutation p.R449W 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 24475453 24475453 C T GPLD1 Missense_Mutation p.E113K 0.29 tolerated(0.05) possibly_damaging(0.805) TCGA-DA-A95Z-06 6 24503623 24503623 C T ALDH5A1 Missense_Mutation p.L191F 0.16 deleterious(0.04) benign(0.034) TCGA-DA-A95Z-06 6 25492037 25492037 G A LRRC16A Missense_Mutation p.M381I 0.08 tolerated(0.34) benign(0.017) TCGA-DA-A95Z-06 6 25670235 25670235 C T SCGN Silent p.L134L 0.31 TCGA-DA-A95Z-06 6 25921602 25921602 G A SLC17A2 Silent p.I93I 0.33 TCGA-DA-A95Z-06 6 26505198 26505198 G A BTN1A1 Missense_Mutation p.G158E 0.18 deleterious(0.02) probably_damaging(0.912) TCGA-DA-A95Z-06 6 28472192 28472192 C T GPX6 Nonsense_Mutation p.W181* 0.28 TCGA-DA-A95Z-06 6 28540023 28540023 C T SCAND3 Missense_Mutation p.D1215N 0.28 tolerated_low_confidence(0.31) benign(0.002) TCGA-DA-A95Z-06 6 28542657 28542657 C T SCAND3 Missense_Mutation p.E609K 0.17 deleterious_low_confidence(0) benign(0.056) TCGA-DA-A95Z-06 6 28547082 28547082 C T SCAND3 Missense_Mutation p.E179K 0.33 tolerated_low_confidence(0.08) benign(0.004) TCGA-DA-A95Z-06 6 2890665 2890665 C T SERPINB9 Missense_Mutation p.G288E 0.36 deleterious(0) probably_damaging(0.997) TCGA-DA-A95Z-06 6 29012818 29012818 G A OR2W1 Silent p.I45I 0.34 TCGA-DA-A95Z-06 6 29054720 29054720 G A OR2B3 Silent p.I102I 0.17 TCGA-DA-A95Z-06 6 29231725 29231725 G A XXbac-BPG308J9.3 RNA 0.33 TCGA-DA-A95Z-06 6 29395209 29395209 G A OR11A1 Silent p.F70F 0.18 TCGA-DA-A95Z-06 6 30310009 30310009 C T TRIM39 Silent p.T510T 0.79 TCGA-DA-A95Z-06 6 30573773 30573773 C T PPP1R10 Silent p.E260E 0.14 TCGA-DA-A95Z-06 6 30672709 30672709 G A MDC1 Silent p.S1417S 0.45 TCGA-DA-A95Z-06 6 30899331 30899331 G A SFTA2 Silent p.L57L 0.19 TCGA-DA-A95Z-06 6 31541335 31541335 A G LTA Silent p.E161E 0.14 TCGA-DA-A95Z-06 6 31584732 31584732 G A AIF1 3'UTR 0.31 TCGA-DA-A95Z-06 6 31597571 31597571 C T PRRC2A Missense_Mutation p.L735F 0.19 possibly_damaging(0.587) TCGA-DA-A95Z-06 6 31730379 31730379 C A MSH5 3'UTR 0.74 TCGA-DA-A95Z-06 6 31852255 31852255 G A EHMT2 Silent p.S895S 0.27 TCGA-DA-A95Z-06 6 31852256 31852256 G A EHMT2 Missense_Mutation p.S895F 0.27 deleterious(0) probably_damaging(0.949) TCGA-DA-A95Z-06 6 31864077 31864077 C A EHMT2 Missense_Mutation p.R182L 0.12 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-DA-A95Z-06 6 31936848 31936848 C T SKIV2L Silent p.L1127L 0.14 TCGA-DA-A95Z-06 6 31936849 31936849 C T SKIV2L Missense_Mutation p.P1128S 0.13 tolerated(0.75) benign(0.126) TCGA-DA-A95Z-06 6 31940145 31940145 C T STK19 Missense_Mutation p.S96F 0.30 tolerated_low_confidence(0.55) benign(0.12) TCGA-DA-A95Z-06 6 32024616 32024616 G A TNXB Silent p.R2630R 0.35 TCGA-DA-A95Z-06 6 32029366 32029366 G A TNXB Missense_Mutation p.P2434S 0.12 probably_damaging(0.991) TCGA-DA-A95Z-06 6 32035575 32035575 G A TNXB Missense_Mutation p.P2136L 0.77 probably_damaging(0.996) TCGA-DA-A95Z-06 6 32166908 32166908 G A NOTCH4 Nonsense_Mutation p.Q1444* 0.24 TCGA-DA-A95Z-06 6 32411192 32411192 G A HLA-DRA Missense_Mutation p.D187N 0.72 deleterious(0.01) probably_damaging(0.977) TCGA-DA-A95Z-06 6 32782984 32782984 G A HLA-DOB Silent p.F66F 0.13 TCGA-DA-A95Z-06 6 32847515 32847515 G A PPP1R2P1 RNA 0.17 TCGA-DA-A95Z-06 6 33136315 33136315 G - COL11A2 Frame_Shift_Del p.P1228Qfs*31 0.33 TCGA-DA-A95Z-06 6 33286527 33286527 G A DAXX Missense_Mutation p.S739F 0.20 deleterious(0) probably_damaging(0.99) TCGA-DA-A95Z-06 6 33290743 33290743 G A DAXX 5'UTR 0.22 TCGA-DA-A95Z-06 6 33374600 33374600 C T KIFC1 Missense_Mutation p.P642L 0.28 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 33405610 33405610 G A SYNGAP1 Missense_Mutation p.E310K 0.12 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 6 33411614 33411614 A T SYNGAP1 Silent p.P1095P 0.15 TCGA-DA-A95Z-06 6 33423694 33423694 C T ZBTB9 Missense_Mutation p.P273S 0.12 tolerated(0.15) benign(0.004) TCGA-DA-A95Z-06 6 35476999 35476999 C T TULP1 Missense_Mutation p.G270E 0.40 deleterious(0.02) possibly_damaging(0.801) TCGA-DA-A95Z-06 6 35554664 35554664 C T FKBP5 Intron 0.19 TCGA-DA-A95Z-06 6 35810380 35810380 G A SRPK1 Missense_Mutation p.A541V 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-DA-A95Z-06 6 36291251 36291251 C T C6orf222 Silent p.R430R 0.31 TCGA-DA-A95Z-06 6 36823796 36823796 G A PPIL1 Silent p.L98L 0.27 TCGA-DA-A95Z-06 6 37620027 37620027 G A MDGA1 Missense_Mutation p.H358Y 0.10 deleterious(0) probably_damaging(0.936) TCGA-DA-A95Z-06 6 38805726 38805726 C T DNAH8 Silent p.F1241F 0.28 TCGA-DA-A95Z-06 6 39040777 39040777 C T GLP1R Missense_Mutation p.L217F 0.12 tolerated(0.07) benign(0.057) TCGA-DA-A95Z-06 6 39874281 39874281 C T MOCS1 3'UTR 0.76 TCGA-DA-A95Z-06 6 41712218 41712218 G A PGC Missense_Mutation p.P82L 0.30 deleterious(0.02) probably_damaging(0.957) TCGA-DA-A95Z-06 6 42832714 42832714 C T GLTSCR1L Missense_Mutation p.R924W 0.78 deleterious_low_confidence(0.03) possibly_damaging(0.799) TCGA-DA-A95Z-06 6 42833106 42833106 C T GLTSCR1L Silent p.F1054F 0.21 TCGA-DA-A95Z-06 6 42980224 42980224 G A MEA1 Missense_Mutation p.S181F 0.41 deleterious(0.01) benign(0.422) TCGA-DA-A95Z-06 6 43305007 43305007 G A ZNF318 Silent p.S2243S 0.49 TCGA-DA-A95Z-06 6 43475612 43475612 T C LRRC73 Silent p.L203L 0.22 TCGA-DA-A95Z-06 6 44116625 44116625 C T TMEM63B Silent p.A452A 0.11 TCGA-DA-A95Z-06 6 44141095 44141095 G A CAPN11 Missense_Mutation p.R268Q 0.49 deleterious(0.02) benign(0.294) TCGA-DA-A95Z-06 6 46563742 46563742 C T CYP39A1 Silent p.V349V 0.14 TCGA-DA-A95Z-06 6 46623691 46623691 G A SLC25A27 Missense_Mutation p.R73H 0.18 tolerated(0.1) benign(0.081) TCGA-DA-A95Z-06 6 46851902 46851902 G A GPR116 Silent p.F145F 0.15 TCGA-DA-A95Z-06 6 46979792 46979792 G A GPR110 Missense_Mutation p.S356L 0.27 tolerated(0.05) benign(0.025) TCGA-DA-A95Z-06 6 47650107 47650107 C T GPR111 Silent p.L604L 0.14 TCGA-DA-A95Z-06 6 47682824 47682824 G A GPR115 Missense_Mutation p.G615R 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 49696287 49696287 A T CRISP3 3'UTR 0.75 TCGA-DA-A95Z-06 6 49701416 49701416 C T CRISP3 Silent p.Q164Q 0.22 TCGA-DA-A95Z-06 6 50696680 50696680 G A TFAP2D Missense_Mutation p.R237H 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-DA-A95Z-06 6 50696682 50696682 C T TFAP2D Missense_Mutation p.L238F 0.18 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 6 51484283 51484283 G T PKHD1 Missense_Mutation p.Q3941K 0.11 deleterious_low_confidence(0.05) benign(0.08) TCGA-DA-A95Z-06 6 51889734 51889734 C T PKHD1 Missense_Mutation p.C1625Y 0.13 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 6 51890901 51890901 G A PKHD1 Missense_Mutation p.S1236F 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-DA-A95Z-06 6 52144386 52144386 G T MCM3 Missense_Mutation p.N226K 0.44 tolerated(0.12) benign(0.008) TCGA-DA-A95Z-06 6 54219385 54219385 G A TINAG Missense_Mutation p.E401K 0.19 tolerated(1) benign(0.006) TCGA-DA-A95Z-06 6 54805844 54805844 G A FAM83B Missense_Mutation p.R692Q 0.45 tolerated(0.06) benign(0.004) TCGA-DA-A95Z-06 6 54806276 54806276 C T FAM83B Missense_Mutation p.S836L 0.26 deleterious(0) possibly_damaging(0.656) TCGA-DA-A95Z-06 6 55119985 55119985 C T HCRTR2 Missense_Mutation p.R152W 0.47 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 55147094 55147094 C T HCRTR2 Missense_Mutation p.R393W 0.16 deleterious(0.02) possibly_damaging(0.849) TCGA-DA-A95Z-06 6 55223885 55223885 G A GFRAL Missense_Mutation p.E301K 0.12 deleterious(0.03) possibly_damaging(0.876) TCGA-DA-A95Z-06 6 56006735 56006735 C T COL21A1 Missense_Mutation p.G494E 0.57 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 6 6222327 6222327 T A F13A1 Missense_Mutation p.M351L 0.39 tolerated(0.82) benign(0.002) TCGA-DA-A95Z-06 6 62995851 62995851 C T KHDRBS2 Translation_Start_Site p.M1? 0.38 deleterious(0) possibly_damaging(0.775) TCGA-DA-A95Z-06 6 69348741 69348741 G C BAI3 Silent p.T58T 0.40 TCGA-DA-A95Z-06 6 69646483 69646483 G A BAI3 Missense_Mutation p.R314Q 0.34 deleterious(0.04) probably_damaging(0.994) TCGA-DA-A95Z-06 6 70034864 70034864 G A BAI3 Missense_Mutation p.G972E 0.54 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 6 71162226 71162226 C T FAM135A Missense_Mutation p.P37S 0.56 tolerated(0.33) probably_damaging(0.912) TCGA-DA-A95Z-06 6 72806652 72806652 G A RIMS1 Silent p.P82P 0.29 TCGA-DA-A95Z-06 6 73904266 73904266 C T KCNQ5 Missense_Mutation p.S662L 0.31 tolerated(0.19) benign(0.309) TCGA-DA-A95Z-06 6 73905242 73905242 A G KCNQ5 3'UTR 0.50 TCGA-DA-A95Z-06 6 74078944 74078944 C T OOEP Missense_Mutation p.E119K 0.22 tolerated(0.18) benign(0.007) TCGA-DA-A95Z-06 6 7580866 7580866 G A DSP Silent p.K1481K 0.34 TCGA-DA-A95Z-06 6 7584204 7584204 G A DSP Missense_Mutation p.E2237K 0.35 possibly_damaging(0.688) TCGA-DA-A95Z-06 6 75861713 75861713 G A COL12A1 Silent p.F1290F 0.23 TCGA-DA-A95Z-06 6 76024012 76024012 C T FILIP1 Silent p.R512R 0.47 TCGA-DA-A95Z-06 6 79711824 79711824 G A PHIP Silent p.F557F 0.20 TCGA-DA-A95Z-06 6 82943937 82943937 G A IBTK Silent p.G119G 0.30 TCGA-DA-A95Z-06 6 84627749 84627749 A C CYB5R4 Silent p.T157T 0.26 TCGA-DA-A95Z-06 6 87725181 87725181 G A HTR1E Silent p.V43V 0.28 TCGA-DA-A95Z-06 6 89793681 89793681 A C PNRC1 Missense_Mutation p.K250N 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-DA-A95Z-06 6 89888426 89888426 C T GABRR1 3'UTR 0.21 TCGA-DA-A95Z-06 6 90402708 90402708 G A MDN1 Silent p.L3347L 0.25 TCGA-DA-A95Z-06 6 90581055 90581055 C T CASP8AP2 RNA 0.32 TCGA-DA-A95Z-06 6 93956552 93956552 C T EPHA7 Missense_Mutation p.R895Q 0.52 tolerated(0.13) benign(0.01) TCGA-DA-A95Z-06 6 93982036 93982036 C T EPHA7 Missense_Mutation p.E477K 0.61 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 6 94066712 94066712 C T EPHA7 Silent p.L349L 0.57 TCGA-DA-A95Z-06 6 94120779 94120779 G A EPHA7 Missense_Mutation p.S91F 0.27 tolerated(0.2) benign(0.329) TCGA-DA-A95Z-06 6 96652093 96652093 G A FUT9 Silent p.E354E 0.42 TCGA-DA-A95Z-06 6 96988422 96988422 T C UFL1 Silent p.N390N 0.33 TCGA-DA-A95Z-06 6 97001360 97001360 C T UFL1 Missense_Mutation p.S789L 0.47 deleterious(0.02) benign(0.075) TCGA-DA-A95Z-06 6 9903648 9903648 A T OFCC1 Intron 0.74 TCGA-DA-A95Z-06 7 100086953 100086953 C T NYAP1 Missense_Mutation p.L537F 0.33 deleterious(0.02) possibly_damaging(0.905) TCGA-DA-A95Z-06 7 100151739 100151739 G A AGFG2 Silent p.R203R 0.39 TCGA-DA-A95Z-06 7 100184199 100184199 G A FBXO24 5'Flank 0.25 TCGA-DA-A95Z-06 7 100198387 100198387 G A FBXO24 Silent p.T574T 0.32 TCGA-DA-A95Z-06 7 100228614 100228614 G A TFR2 Missense_Mutation p.H390Y 0.50 tolerated(0.23) benign(0.001) TCGA-DA-A95Z-06 7 100364824 100364824 G A ZAN Missense_Mutation p.V1602I 0.10 unknown(0) TCGA-DA-A95Z-06 7 100551277 100551277 A G MUC3A Missense_Mutation p.T10A 0.26 tolerated_low_confidence(0.22) unknown(0) TCGA-DA-A95Z-06 7 100676169 100676169 C T MUC17 Missense_Mutation p.S491L 0.24 benign(0.127) TCGA-DA-A95Z-06 7 100678671 100678671 C G MUC17 Missense_Mutation p.T1325S 0.24 unknown(0) TCGA-DA-A95Z-06 7 100678874 100678874 G A MUC17 Missense_Mutation p.E1393K 0.23 unknown(0) TCGA-DA-A95Z-06 7 100682181 100682181 C T MUC17 Missense_Mutation p.S2495L 0.25 probably_damaging(0.916) TCGA-DA-A95Z-06 7 100684131 100684131 C G MUC17 Missense_Mutation p.S3145C 0.27 probably_damaging(0.987) TCGA-DA-A95Z-06 7 100687012 100687012 C T MUC17 Silent p.F4105F 0.34 TCGA-DA-A95Z-06 7 100775257 100775257 C T SERPINE1 Missense_Mutation p.P203S 0.23 tolerated(0.74) benign(0.028) TCGA-DA-A95Z-06 7 100861399 100861399 G A ZNHIT1 5'UTR 0.21 TCGA-DA-A95Z-06 7 101188654 101188654 G A COL26A1 Missense_Mutation p.G247R 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 7 101188655 101188655 G T COL26A1 Missense_Mutation p.G247V 0.38 tolerated(0.05) probably_damaging(1) TCGA-DA-A95Z-06 7 102953382 102953382 T A PMPCB 3'UTR 0.35 TCGA-DA-A95Z-06 7 103018992 103018992 C T SLC26A5 Silent p.V562V 0.27 TCGA-DA-A95Z-06 7 103030886 103030886 G A SLC26A5 Missense_Mutation p.S434L 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-DA-A95Z-06 7 104741891 104741891 T C KMT2E Missense_Mutation p.M581T 0.20 deleterious(0.01) benign(0.042) TCGA-DA-A95Z-06 7 104782589 104782589 G A SRPK2 Missense_Mutation p.S470F 0.30 deleterious(0.01) possibly_damaging(0.667) TCGA-DA-A95Z-06 7 104783764 104783764 G A SRPK2 Missense_Mutation p.S276F 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-DA-A95Z-06 7 105205867 105205867 T C RINT1 Missense_Mutation p.M677T 0.23 tolerated(0.6) benign(0.001) TCGA-DA-A95Z-06 7 106508223 106508223 C T PIK3CG Nonsense_Mutation p.Q73* 0.21 TCGA-DA-A95Z-06 7 106786873 106786873 C T PRKAR2B Silent p.I236I 0.27 TCGA-DA-A95Z-06 7 107720167 107720167 T C LAMB4 Missense_Mutation p.N589S 0.24 tolerated(0.48) benign(0.001) TCGA-DA-A95Z-06 7 108155425 108155425 G A PNPLA8 Missense_Mutation p.P171S 0.27 tolerated_low_confidence(0.45) benign(0.001) TCGA-DA-A95Z-06 7 110303696 110303696 G A IMMP2L Missense_Mutation p.P164S 0.26 tolerated(0.06) probably_damaging(0.997) TCGA-DA-A95Z-06 7 113518831 113518831 C T PPP1R3A Silent p.A772A 0.07 TCGA-DA-A95Z-06 7 113518839 113518839 C T PPP1R3A Missense_Mutation p.E770K 0.20 deleterious(0.01) probably_damaging(0.927) TCGA-DA-A95Z-06 7 113519518 113519518 C T PPP1R3A Silent p.R543R 0.37 TCGA-DA-A95Z-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.23 tolerated(0.12) benign(0.063) TCGA-DA-A95Z-06 7 11464429 11464429 C T THSD7A Missense_Mutation p.D1093N 0.47 tolerated(0.1) possibly_damaging(0.694) TCGA-DA-A95Z-06 7 115580942 115580942 G A TFEC Missense_Mutation p.A236V 0.26 deleterious(0.04) possibly_damaging(0.794) TCGA-DA-A95Z-06 7 116411686 116411686 G A MET Silent p.L973L 0.25 TCGA-DA-A95Z-06 7 116415009 116415009 C T MET Silent p.L1053L 0.66 TCGA-DA-A95Z-06 7 116544378 116544378 T C CAPZA2 Missense_Mutation p.S123P 0.26 deleterious(0.02) possibly_damaging(0.529) TCGA-DA-A95Z-06 7 11675935 11675935 C T THSD7A Missense_Mutation p.E282K 0.44 tolerated(0.52) benign(0.066) TCGA-DA-A95Z-06 7 117182159 117182159 G A CFTR Silent p.E402E 0.17 TCGA-DA-A95Z-06 7 117304772 117304772 C T CFTR Missense_Mutation p.P1332S 0.37 tolerated(0.08) possibly_damaging(0.714) TCGA-DA-A95Z-06 7 117431589 117431589 T A CTTNBP2 Missense_Mutation p.Q554L 0.29 deleterious(0) possibly_damaging(0.69) TCGA-DA-A95Z-06 7 120901717 120901717 G A CPED1 Intron 0.77 TCGA-DA-A95Z-06 7 120969826 120969826 G A WNT16 Missense_Mutation p.A101T 0.12 tolerated(0.2) benign(0.007) TCGA-DA-A95Z-06 7 121756701 121756701 G A AASS Missense_Mutation p.R294C 0.24 tolerated(0.06) possibly_damaging(0.893) TCGA-DA-A95Z-06 7 123296069 123296069 G A LMOD2 Missense_Mutation p.E18K 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-DA-A95Z-06 7 123302139 123302139 A - LMOD2 Frame_Shift_Del p.S168Vfs*3 0.20 TCGA-DA-A95Z-06 7 123302748 123302748 G A LMOD2 Missense_Mutation p.D370N 0.22 tolerated(0.1) benign(0.003) TCGA-DA-A95Z-06 7 123517116 123517116 G A HYAL4 Silent p.T451T 0.29 TCGA-DA-A95Z-06 7 126544063 126544063 C T GRM8 Silent p.G327G 0.23 TCGA-DA-A95Z-06 7 127235597 127235597 C T FSCN3 Silent p.S127S 0.13 TCGA-DA-A95Z-06 7 127255171 127255171 G A PAX4 Intron 0.27 TCGA-DA-A95Z-06 7 128481274 128481274 G A FLNC Missense_Mutation p.G622R 0.30 deleterious(0.01) probably_damaging(0.958) TCGA-DA-A95Z-06 7 128483851 128483851 G A FLNC Missense_Mutation p.G938D 0.64 deleterious(0) probably_damaging(0.948) TCGA-DA-A95Z-06 7 128802281 128802281 C T TSPAN33 Silent p.I69I 0.39 TCGA-DA-A95Z-06 7 128846108 128846131 GGGCACCACCTACCAGCCTCTCTC - SMO In_Frame_Del p.T348_G355del 0.27 TCGA-DA-A95Z-06 7 129330361 129330361 C T NRF1 Missense_Mutation p.P194L 0.37 tolerated(0.05) probably_damaging(0.971) TCGA-DA-A95Z-06 7 129691084 129691084 G A ZC3HC1 Silent p.A41A 0.30 TCGA-DA-A95Z-06 7 131864561 131864561 G A PLXNA4 Silent p.I1253I 0.28 TCGA-DA-A95Z-06 7 131912358 131912358 G A PLXNA4 Silent p.V578V 0.28 TCGA-DA-A95Z-06 7 131913126 131913126 G A PLXNA4 Silent p.S569S 0.32 TCGA-DA-A95Z-06 7 132192321 132192321 C T PLXNA4 Missense_Mutation p.E378K 0.32 tolerated(0.06) probably_damaging(0.993) TCGA-DA-A95Z-06 7 136700668 136700668 G A CHRM2 Silent p.Q352Q 0.39 TCGA-DA-A95Z-06 7 138235856 138235856 C T TRIM24 Missense_Mutation p.P398S 0.20 deleterious(0.02) possibly_damaging(0.652) TCGA-DA-A95Z-06 7 138602205 138602205 G A KIAA1549 Missense_Mutation p.P723S 0.34 tolerated(0.47) benign(0.035) TCGA-DA-A95Z-06 7 138853198 138853198 G T TTC26 Intron 0.09 TCGA-DA-A95Z-06 7 140481411 140481411 C T BRAF Missense_Mutation p.G466E 0.27 deleterious(0) probably_damaging(0.911) TCGA-DA-A95Z-06 7 141427329 141427329 T G WEE2 Intron 0.34 TCGA-DA-A95Z-06 7 141754576 141754576 G A MGAM Missense_Mutation p.R1061Q 0.23 deleterious(0) probably_damaging(0.984) TCGA-DA-A95Z-06 7 141763308 141763308 G A MGAM Missense_Mutation p.E1423K 0.22 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 7 141763342 141763342 C T MGAM Missense_Mutation p.P1434L 0.28 tolerated(0.35) benign(0.029) TCGA-DA-A95Z-06 7 141952085 141952085 A T PRSS58 Missense_Mutation p.F228I 0.21 tolerated(0.14) benign(0.09) TCGA-DA-A95Z-06 7 142028353 142028353 C T TRBV6-1 Silent p.F29F 0.33 TCGA-DA-A95Z-06 7 142099472 142099472 G A TRBV7-8 Silent p.L110L 0.10 TCGA-DA-A95Z-06 7 142099889 142099889 C T TRBV7-8 Splice_Site p.X17_splice 0.38 TCGA-DA-A95Z-06 7 142104205 142104205 C T TRBV6-9 Missense_Mutation p.R87K 0.25 deleterious(0.01) possibly_damaging(0.878) TCGA-DA-A95Z-06 7 142162407 142162407 G A TRBV6-6 5'UTR 0.22 TCGA-DA-A95Z-06 7 142231810 142231810 C T TRBV10-1 Missense_Mutation p.R36K 0.44 tolerated(0.93) benign(0.003) TCGA-DA-A95Z-06 7 142448531 142448531 G A TRBV29-1 Missense_Mutation p.S42N 0.25 tolerated(0.38) possibly_damaging(0.859) TCGA-DA-A95Z-06 7 142458477 142458477 C T PRSS1 Nonsense_Mutation p.Q38* 0.18 TCGA-DA-A95Z-06 7 142564697 142564697 G A EPHB6 Missense_Mutation p.E541K 0.25 tolerated(1) probably_damaging(0.999) TCGA-DA-A95Z-06 7 142655478 142655478 C T KEL Silent p.E146E 0.25 TCGA-DA-A95Z-06 7 142749631 142749631 C T OR6V1 Missense_Mutation p.S65F 0.22 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 7 142750081 142750081 C T OR6V1 Missense_Mutation p.S215F 0.39 deleterious(0.02) probably_damaging(1) TCGA-DA-A95Z-06 7 143047686 143047686 G A CLCN1 Missense_Mutation p.G845D 0.23 deleterious(0) probably_damaging(0.988) TCGA-DA-A95Z-06 7 143086006 143086006 C A ZYX Silent p.A487A 0.36 TCGA-DA-A95Z-06 7 143175394 143175394 C T TAS2R41 Silent p.I143I 0.39 TCGA-DA-A95Z-06 7 143175837 143175837 G A TAS2R41 Missense_Mutation p.R291Q 0.30 tolerated(0.06) benign(0.382) TCGA-DA-A95Z-06 7 143270093 143270093 G A CTAGE15 Missense_Mutation p.E395K 0.38 deleterious(0.02) benign(0.132) TCGA-DA-A95Z-06 7 143270285 143270285 G A CTAGE15 Missense_Mutation p.E459K 0.33 deleterious(0.05) benign(0.329) TCGA-DA-A95Z-06 7 143632637 143632637 C T OR2F2 Silent p.S104S 0.23 TCGA-DA-A95Z-06 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.25 TCGA-DA-A95Z-06 7 143701668 143701668 C T OR6B1 Silent p.S193S 0.35 TCGA-DA-A95Z-06 7 143771523 143771523 G A OR2A25 Missense_Mutation p.A71T 0.20 tolerated(0.08) benign(0.087) TCGA-DA-A95Z-06 7 147869386 147869386 G A CNTNAP2 Missense_Mutation p.M942I 0.26 tolerated(0.17) benign(0.032) TCGA-DA-A95Z-06 7 148287933 148287933 G A C7orf33 5'UTR 0.33 TCGA-DA-A95Z-06 7 149476020 149476020 G A SSPO RNA 0.26 TCGA-DA-A95Z-06 7 149497385 149497385 C T SSPO RNA 0.33 TCGA-DA-A95Z-06 7 150171435 150171435 G A GIMAP8 Missense_Mutation p.D340N 0.65 tolerated(0.07) probably_damaging(0.997) TCGA-DA-A95Z-06 7 150171657 150171657 G A GIMAP8 Missense_Mutation p.E414K 0.23 tolerated(0.54) benign(0.136) TCGA-DA-A95Z-06 7 150779683 150779683 G A TMUB1 Intron 0.41 TCGA-DA-A95Z-06 7 154667755 154667755 G A DPP6 Missense_Mutation p.E675K 0.33 tolerated(0.2) benign(0.076) TCGA-DA-A95Z-06 7 157926745 157926745 G A PTPRN2 Missense_Mutation p.R394C 0.25 deleterious(0.01) possibly_damaging(0.642) TCGA-DA-A95Z-06 7 158424410 158424410 C T NCAPG2 Splice_Site p.X1127_splice 0.25 TCGA-DA-A95Z-06 7 158476057 158476057 G A NCAPG2 Nonsense_Mutation p.Q287* 0.40 TCGA-DA-A95Z-06 7 158715237 158715237 C T WDR60 Silent p.S697S 0.25 TCGA-DA-A95Z-06 7 18705938 18705938 C T HDAC9 Missense_Mutation p.P524S 0.52 tolerated(0.2) benign(0.023) TCGA-DA-A95Z-06 7 21678629 21678629 C T DNAH11 Silent p.F1635F 0.39 TCGA-DA-A95Z-06 7 21893954 21893954 G A DNAH11 Missense_Mutation p.E3702K 0.46 possibly_damaging(0.523) TCGA-DA-A95Z-06 7 2565327 2565327 C A LFNG Silent p.V248V 0.14 TCGA-DA-A95Z-06 7 26412178 26412178 C T SNX10 Missense_Mutation p.P198S 0.45 tolerated_low_confidence(0.92) benign(0) TCGA-DA-A95Z-06 7 27140822 27140822 C T HOXA2 Silent p.E218E 0.49 TCGA-DA-A95Z-06 7 27195814 27195814 G A HOXA7 Silent p.F117F 0.38 TCGA-DA-A95Z-06 7 29726916 29726916 C T DPY19L2P3 RNA 0.50 TCGA-DA-A95Z-06 7 2983998 2983998 C T CARD11 Missense_Mutation p.E178K 0.43 deleterious(0) benign(0.089) TCGA-DA-A95Z-06 7 30880383 30880383 C T FAM188B Missense_Mutation p.P455L 0.49 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Z-06 7 31864496 31864496 C T PDE1C Missense_Mutation p.G524E 0.48 tolerated(0.12) benign(0.158) TCGA-DA-A95Z-06 7 33055357 33055357 G A NT5C3A Silent p.S278S 0.45 TCGA-DA-A95Z-06 7 34697913 34697913 C T NPSR1 5'UTR 0.31 TCGA-DA-A95Z-06 7 34867072 34867072 C T NPSR1 Missense_Mutation p.P180S 0.42 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 7 38305203 38305203 C T TRGC1 Silent p.K26K 0.44 TCGA-DA-A95Z-06 7 40498755 40498755 G A SUGCT Missense_Mutation p.R322Q 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 7 40498756 40498756 G A SUGCT Silent p.R322R 0.39 TCGA-DA-A95Z-06 7 43594286 43594286 G A HECW1 Missense_Mutation p.G1536R 0.42 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 7 44571814 44571814 G A NPC1L1 Silent p.A804A 0.45 TCGA-DA-A95Z-06 7 45717791 45717791 C T ADCY1 Silent p.F609F 0.36 TCGA-DA-A95Z-06 7 50531015 50531015 G A DDC Missense_Mutation p.R453C 0.34 deleterious(0) probably_damaging(0.962) TCGA-DA-A95Z-06 7 53103483 53103483 C T POM121L12 Missense_Mutation p.P40L 0.48 deleterious(0.01) probably_damaging(0.958) TCGA-DA-A95Z-06 7 5372578 5372578 G A TNRC18 Missense_Mutation p.P1941L 0.60 benign(0.351) TCGA-DA-A95Z-06 7 55223557 55223557 C T EGFR Silent p.V308V 0.47 TCGA-DA-A95Z-06 7 5529667 5529667 G A FBXL18 Intron 0.56 TCGA-DA-A95Z-06 7 5567270 5567270 A C ACTB 3'UTR 0.35 TCGA-DA-A95Z-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.50 TCGA-DA-A95Z-06 7 6026643 6026643 G A PMS2 Missense_Mutation p.L585F 0.38 tolerated(0.06) benign(0.162) TCGA-DA-A95Z-06 7 63709419 63709419 C T ZNF679 5'UTR 0.46 TCGA-DA-A95Z-06 7 63726360 63726360 A C ZNF679 Missense_Mutation p.K117Q 0.45 deleterious(0.02) possibly_damaging(0.522) TCGA-DA-A95Z-06 7 65705698 65705698 C T TPST1 Missense_Mutation p.R96C 0.46 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 7 70597914 70597914 C T WBSCR17 Silent p.I42I 0.63 TCGA-DA-A95Z-06 7 70800608 70800608 C T WBSCR17 Missense_Mutation p.S104F 0.38 deleterious(0) benign(0.235) TCGA-DA-A95Z-06 7 72717689 72717689 G A NSUN5 Silent p.F398F 0.40 TCGA-DA-A95Z-06 7 7283232 7283232 C T C1GALT1 Silent p.L322L 0.40 TCGA-DA-A95Z-06 7 73011977 73011977 C T MLXIPL Missense_Mutation p.E380K 0.38 tolerated(0.38) probably_damaging(0.98) TCGA-DA-A95Z-06 7 73459564 73459564 C T ELN Missense_Mutation p.P161L 0.45 unknown(0) TCGA-DA-A95Z-06 7 7400022 7400022 C T COL28A1 Silent p.E1068E 0.45 TCGA-DA-A95Z-06 7 7625289 7625289 A G MIOS Silent p.V557V 0.40 TCGA-DA-A95Z-06 7 7625336 7625336 G A MIOS Missense_Mutation p.R573K 0.44 tolerated(0.24) benign(0.421) TCGA-DA-A95Z-06 7 76871183 76871183 G A CCDC146 Missense_Mutation p.E139K 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A95Z-06 7 81600155 81600155 G A CACNA2D1 Intron 0.19 TCGA-DA-A95Z-06 7 81746377 81746377 G A CACNA2D1 Missense_Mutation p.T170I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A95Z-06 7 81799923 81799923 G A CACNA2D1 Silent p.R99R 0.21 TCGA-DA-A95Z-06 7 82453564 82453564 C G PCLO Missense_Mutation p.D4862H 0.20 unknown(0) TCGA-DA-A95Z-06 7 82584262 82584262 G A PCLO Missense_Mutation p.P2003S 0.39 unknown(0) TCGA-DA-A95Z-06 7 83023630 83023630 C T SEMA3E Missense_Mutation p.E495K 0.42 deleterious(0.05) benign(0.296) TCGA-DA-A95Z-06 7 83029484 83029484 G A SEMA3E Missense_Mutation p.P409L 0.46 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 7 86415892 86415892 G A GRM3 Missense_Mutation p.E262K 0.63 tolerated(0.26) benign(0.063) TCGA-DA-A95Z-06 7 86415946 86415946 G A GRM3 Missense_Mutation p.D280N 0.41 tolerated(0.08) possibly_damaging(0.801) TCGA-DA-A95Z-06 7 86469000 86469000 G A GRM3 Missense_Mutation p.E724K 0.39 tolerated(0.88) benign(0.217) TCGA-DA-A95Z-06 7 86493601 86493601 C T GRM3 Missense_Mutation p.S857F 0.35 deleterious(0.02) benign(0.344) TCGA-DA-A95Z-06 7 86541412 86541412 G A KIAA1324L Silent p.F715F 0.28 TCGA-DA-A95Z-06 7 8790956 8790956 C T NXPH1 Missense_Mutation p.H125Y 0.47 tolerated(1) benign(0.04) TCGA-DA-A95Z-06 7 87910339 87910339 G T STEAP4 Nonsense_Mutation p.S347* 0.38 TCGA-DA-A95Z-06 7 88423460 88423460 C T C7orf62 3'UTR 0.25 TCGA-DA-A95Z-06 7 88423593 88423593 C T C7orf62 Missense_Mutation p.E222K 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-DA-A95Z-06 7 89789117 89789117 A C STEAP1 Missense_Mutation p.K5N 0.28 tolerated_low_confidence(0.65) benign(0.001) TCGA-DA-A95Z-06 7 89939588 89939588 A T C7orf63 3'UTR 0.30 TCGA-DA-A95Z-06 7 905599 905599 C T SUN1 Silent p.I625I 0.67 TCGA-DA-A95Z-06 7 92730503 92730503 G A SAMD9 3'UTR 0.29 TCGA-DA-A95Z-06 7 92730851 92730851 C T SAMD9 Silent p.E1520E 0.18 TCGA-DA-A95Z-06 7 92848462 92848462 C T HEPACAM2 Missense_Mutation p.G128R 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A95Z-06 7 94038665 94038665 C T COL1A2 Missense_Mutation p.P275L 0.24 unknown(0) TCGA-DA-A95Z-06 7 94944633 94944633 C T PON1 Splice_Site p.X124_splice 0.19 TCGA-DA-A95Z-06 7 96639353 96639353 G A DLX6 Missense_Mutation p.M292I 0.30 tolerated(0.07) benign(0.019) TCGA-DA-A95Z-06 7 97617762 97617762 C T OCM2 Missense_Mutation p.D54N 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A95Z-06 7 97788663 97788663 C G LMTK2 Missense_Mutation p.P195A 0.10 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 7 98609940 98609940 C T TRRAP Silent p.L3848L 0.30 TCGA-DA-A95Z-06 7 98988559 98988559 C T ARPC1B Missense_Mutation p.P182S 0.60 tolerated(0.19) probably_damaging(0.985) TCGA-DA-A95Z-06 7 99270412 99270412 G A CYP3A5 Intron 0.34 TCGA-DA-A95Z-06 7 99631082 99631082 C T ZKSCAN1 Silent p.N318N 0.21 TCGA-DA-A95Z-06 7 99654598 99654598 C T ZSCAN21 5'UTR 0.39 TCGA-DA-A95Z-06 7 99754788 99754788 G A C7orf43 Silent p.I258I 0.27 TCGA-DA-A95Z-06 8 100514002 100514002 G A VPS13B Missense_Mutation p.G1320R 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A95Z-06 8 10466111 10466111 C T RP1L1 Missense_Mutation p.E1833K 0.58 unknown(0) TCGA-DA-A95Z-06 8 10466616 10466616 C T RP1L1 Silent p.R1664R 0.67 TCGA-DA-A95Z-06 8 10468796 10468796 C T RP1L1 Missense_Mutation p.E938K 0.30 possibly_damaging(0.811) TCGA-DA-A95Z-06 8 10470125 10470125 C T RP1L1 Missense_Mutation p.A495T 0.24 benign(0.154) TCGA-DA-A95Z-06 8 105463571 105463571 G A DPYS Missense_Mutation p.S109F 0.60 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 110131599 110131599 C T TRHR Missense_Mutation p.T371I 0.60 deleterious(0.03) possibly_damaging(0.547) TCGA-DA-A95Z-06 8 110355782 110355782 C T ENY2 3'UTR 0.53 TCGA-DA-A95Z-06 8 110466450 110466450 T A PKHD1L1 Missense_Mutation p.L2240Q 0.56 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 8 11281773 11281773 G A FAM167A 3'UTR 0.46 TCGA-DA-A95Z-06 8 11405617 11405617 G A BLK Silent p.K84K 0.61 TCGA-DA-A95Z-06 8 116427302 116427302 G A TRPS1 Missense_Mutation p.P945L 0.46 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 8 11679256 11679256 C T FDFT1 Intron 0.58 TCGA-DA-A95Z-06 8 119593017 119593017 G A SAMD12 Silent p.F43F 0.44 TCGA-DA-A95Z-06 8 119593108 119593108 C T SAMD12 Missense_Mutation p.R13Q 0.44 tolerated_low_confidence(0.23) benign(0.163) TCGA-DA-A95Z-06 8 120118133 120118133 G A COLEC10 Silent p.R179R 0.41 TCGA-DA-A95Z-06 8 120805635 120805635 G A TAF2 Silent p.P416P 0.25 TCGA-DA-A95Z-06 8 122626715 122626715 G A HAS2 Silent p.I431I 0.46 TCGA-DA-A95Z-06 8 124724923 124724923 C T ANXA13 Missense_Mutation p.G70E 0.32 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 8 124724924 124724924 C T ANXA13 Missense_Mutation p.G70R 0.32 deleterious(0) probably_damaging(0.994) TCGA-DA-A95Z-06 8 125025849 125025849 G A FER1L6 Intron 0.55 TCGA-DA-A95Z-06 8 125072843 125072843 C T FER1L6 Missense_Mutation p.R1014W 0.45 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 125078773 125078773 C T FER1L6 Silent p.S1220S 0.35 TCGA-DA-A95Z-06 8 125082807 125082807 C T FER1L6 Missense_Mutation p.L1312F 0.41 tolerated(0.3) benign(0.003) TCGA-DA-A95Z-06 8 126194372 126194372 C T NSMCE2 Missense_Mutation p.P98S 0.39 tolerated(0.42) possibly_damaging(0.798) TCGA-DA-A95Z-06 8 12870349 12870349 C T KIAA1456 Missense_Mutation p.A104V 0.37 deleterious(0) probably_damaging(0.964) TCGA-DA-A95Z-06 8 131792737 131792737 C T ADCY8 Missense_Mutation p.G1219R 0.39 deleterious(0.02) benign(0.004) TCGA-DA-A95Z-06 8 131859672 131859672 C T ADCY8 Missense_Mutation p.E834K 0.38 deleterious(0.04) benign(0.001) TCGA-DA-A95Z-06 8 131916183 131916183 G A ADCY8 Silent p.I582I 0.44 TCGA-DA-A95Z-06 8 131949372 131949372 C T ADCY8 Silent p.Q476Q 0.43 TCGA-DA-A95Z-06 8 134239723 134239723 A C WISP1 Missense_Mutation p.S292R 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 136659409 136659409 C T KHDRBS3 3'UTR 0.56 TCGA-DA-A95Z-06 8 139209816 139209816 G A FAM135B Missense_Mutation p.R256C 0.47 tolerated(0.07) benign(0.075) TCGA-DA-A95Z-06 8 139606259 139606259 C T COL22A1 Splice_Site p.X1539_splice 0.51 TCGA-DA-A95Z-06 8 139606413 139606413 G A COL22A1 Missense_Mutation p.P1488S 0.44 unknown(0) TCGA-DA-A95Z-06 8 142178189 142178189 C T DENND3 Missense_Mutation p.H534Y 0.52 tolerated(1) benign(0) TCGA-DA-A95Z-06 8 143958597 143958597 G A CYP11B1 Missense_Mutation p.P146L 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-DA-A95Z-06 8 144672266 144672266 G A EEF1D Intron 0.46 TCGA-DA-A95Z-06 8 144810720 144810720 C T FAM83H Missense_Mutation p.G304E 0.53 deleterious(0.02) probably_damaging(0.989) TCGA-DA-A95Z-06 8 145006199 145006199 G A PLEC Missense_Mutation p.S832F 0.46 unknown(0) TCGA-DA-A95Z-06 8 145027986 145027986 C T PLEC 5'Flank 0.19 TCGA-DA-A95Z-06 8 145110710 145110710 G A OPLAH Silent p.H743H 0.65 TCGA-DA-A95Z-06 8 145110780 145110780 G A OPLAH Missense_Mutation p.S720F 0.41 deleterious(0.04) benign(0.091) TCGA-DA-A95Z-06 8 145512927 145512927 G A BOP1 Missense_Mutation p.S53F 0.45 deleterious(0) possibly_damaging(0.485) TCGA-DA-A95Z-06 8 145623261 145623261 C T CPSF1 Missense_Mutation p.A661T 0.45 tolerated(0.39) benign(0.063) TCGA-DA-A95Z-06 8 145736688 145736688 T - RECQL4 3'UTR 0.17 TCGA-DA-A95Z-06 8 145755796 145755796 G A ARHGAP39 3'UTR 0.55 TCGA-DA-A95Z-06 8 146155986 146155986 C T ZNF16 3'UTR 0.40 TCGA-DA-A95Z-06 8 16026273 16026273 C T MSR1 Missense_Mutation p.M108I 0.62 tolerated(0.4) benign(0.005) TCGA-DA-A95Z-06 8 17163319 17163319 G A MTMR7 Silent p.S433S 0.58 TCGA-DA-A95Z-06 8 18258272 18258272 C T NAT2 Silent p.V253V 0.62 TCGA-DA-A95Z-06 8 2026819 2026819 G A MYOM2 Missense_Mutation p.E423K 0.61 deleterious(0.03) probably_damaging(0.969) TCGA-DA-A95Z-06 8 2088763 2088763 C T MYOM2 Silent p.F1306F 0.25 TCGA-DA-A95Z-06 8 21956456 21956456 C T FAM160B2 Intron 0.53 TCGA-DA-A95Z-06 8 21959794 21959794 G A FAM160B2 Missense_Mutation p.G654S 0.57 deleterious(0.05) possibly_damaging(0.754) TCGA-DA-A95Z-06 8 21959795 21959795 G A FAM160B2 Missense_Mutation p.G654D 0.58 deleterious(0) probably_damaging(0.986) TCGA-DA-A95Z-06 8 22006117 22006117 G A LGI3 Silent p.I401I 0.54 TCGA-DA-A95Z-06 8 22079233 22079233 G T PHYHIP Missense_Mutation p.P209Q 0.16 tolerated(0.28) benign(0.02) TCGA-DA-A95Z-06 8 22162334 22162334 C T PIWIL2 Missense_Mutation p.P470S 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 22887170 22887170 G A TNFRSF10B Silent p.T143T 0.62 TCGA-DA-A95Z-06 8 22887171 22887171 G A TNFRSF10B Missense_Mutation p.T143I 0.62 deleterious(0) probably_damaging(0.909) TCGA-DA-A95Z-06 8 24333995 24333995 G A ADAM7 Missense_Mutation p.G228E 0.29 tolerated(1) probably_damaging(1) TCGA-DA-A95Z-06 8 25209293 25209293 G A DOCK5 Missense_Mutation p.R934K 0.47 deleterious(0.01) possibly_damaging(0.867) TCGA-DA-A95Z-06 8 25337590 25337590 C T CDCA2 Missense_Mutation p.R328C 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 25715975 25715975 G A EBF2 Missense_Mutation p.S463F 0.33 deleterious(0) probably_damaging(0.974) TCGA-DA-A95Z-06 8 26513184 26513184 C T DPYSL2 Missense_Mutation p.P561S 0.63 deleterious(0) possibly_damaging(0.45) TCGA-DA-A95Z-06 8 26627642 26627642 C T ADRA1A Intron 0.54 TCGA-DA-A95Z-06 8 2823345 2823345 G A CSMD1 Missense_Mutation p.R3078C 0.69 possibly_damaging(0.761) TCGA-DA-A95Z-06 8 2824228 2824228 C T CSMD1 Missense_Mutation p.M2988I 0.62 benign(0.071) TCGA-DA-A95Z-06 8 28929645 28929645 G A KIF13B Silent p.S1570S 0.50 TCGA-DA-A95Z-06 8 30916749 30916749 T A WRN Silent p.A59A 0.61 TCGA-DA-A95Z-06 8 32585464 32585464 C T NRG1 Intron 0.69 TCGA-DA-A95Z-06 8 36675222 36675222 G A KCNU1 Silent p.R350R 0.19 TCGA-DA-A95Z-06 8 37697738 37697738 C T GPR124 Missense_Mutation p.P871S 0.64 tolerated(0.52) benign(0.034) TCGA-DA-A95Z-06 8 38186920 38186920 G A WHSC1L1 Silent p.I519I 0.72 TCGA-DA-A95Z-06 8 38275824 38275824 G A FGFR1 Missense_Mutation p.S482F 0.72 deleterious(0) probably_damaging(0.987) TCGA-DA-A95Z-06 8 38677950 38677950 C T TACC1 Silent p.P396P 0.20 TCGA-DA-A95Z-06 8 39111946 39111946 G A ADAM32 Missense_Mutation p.R639K 0.62 tolerated(1) benign(0.001) TCGA-DA-A95Z-06 8 39467040 39467040 C T ADAM18 Missense_Mutation p.P102S 0.59 deleterious(0.03) probably_damaging(0.983) TCGA-DA-A95Z-06 8 39505906 39505906 G A ADAM18 Missense_Mutation p.D364N 0.61 tolerated(0.08) probably_damaging(0.936) TCGA-DA-A95Z-06 8 39537696 39537696 G A ADAM18 Missense_Mutation p.G591E 0.75 tolerated(0.31) possibly_damaging(0.585) TCGA-DA-A95Z-06 8 39679178 39679178 A T ADAM2 Missense_Mutation p.F91I 0.12 tolerated(0.41) benign(0.035) TCGA-DA-A95Z-06 8 39775394 39775394 G A IDO1 Missense_Mutation p.E30K 0.18 tolerated(0.68) benign(0.128) TCGA-DA-A95Z-06 8 39785607 39785607 C T IDO1 Missense_Mutation p.S372L 0.77 tolerated(0.07) benign(0.056) TCGA-DA-A95Z-06 8 42302264 42302264 G T SLC20A2 Silent p.L210L 0.63 TCGA-DA-A95Z-06 8 42552590 42552590 G A CHRNB3 5'UTR 0.81 TCGA-DA-A95Z-06 8 4494895 4494895 C T CSMD1 Missense_Mutation p.G91R 0.54 probably_damaging(1) TCGA-DA-A95Z-06 8 48626103 48626103 G A SPIDR Silent p.L747L 0.36 TCGA-DA-A95Z-06 8 49647736 49647736 C T EFCAB1 5'UTR 0.19 TCGA-DA-A95Z-06 8 51415418 51415418 C T SNTG1 Silent p.L148L 0.26 TCGA-DA-A95Z-06 8 52321462 52321462 G A PXDNL Nonsense_Mutation p.Q908* 0.15 TCGA-DA-A95Z-06 8 52321526 52321526 C T PXDNL Silent p.Q886Q 0.45 TCGA-DA-A95Z-06 8 52321962 52321962 G T PXDNL Missense_Mutation p.T741K 0.29 deleterious(0.02) benign(0.36) TCGA-DA-A95Z-06 8 53558327 53558327 C T RB1CC1 Missense_Mutation p.E1308K 0.43 tolerated(0.81) possibly_damaging(0.601) TCGA-DA-A95Z-06 8 53574107 53574107 T A RB1CC1 Missense_Mutation p.H449L 0.52 tolerated(0.22) benign(0.11) TCGA-DA-A95Z-06 8 54147322 54147322 C T OPRK1 Missense_Mutation p.E203K 0.32 tolerated(0.27) benign(0.111) TCGA-DA-A95Z-06 8 54147659 54147659 C T OPRK1 Missense_Mutation p.M90I 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-DA-A95Z-06 8 54163512 54163512 C T OPRK1 Nonsense_Mutation p.W29* 0.48 TCGA-DA-A95Z-06 8 55537937 55537937 C T RP1 Missense_Mutation p.H499Y 0.36 tolerated(0.08) possibly_damaging(0.826) TCGA-DA-A95Z-06 8 55540397 55540397 G A RP1 Missense_Mutation p.E1319K 0.52 deleterious(0.04) benign(0.232) TCGA-DA-A95Z-06 8 55540482 55540482 C T RP1 Missense_Mutation p.S1347F 0.34 deleterious(0.02) benign(0.034) TCGA-DA-A95Z-06 8 55540720 55540720 G A RP1 Silent p.R1426R 0.48 TCGA-DA-A95Z-06 8 56910905 56910905 A T LYN Missense_Mutation p.I351F 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-DA-A95Z-06 8 57025829 57025829 G A MOS Missense_Mutation p.P238L 0.55 tolerated(0.22) benign(0.01) TCGA-DA-A95Z-06 8 59412710 59412710 G A CYP7A1 5'UTR 0.53 TCGA-DA-A95Z-06 8 61178486 61178486 C T CA8 Missense_Mutation p.E139K 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 8 61655482 61655482 T C CHD7 Silent p.P497P 0.36 TCGA-DA-A95Z-06 8 6302619 6302619 C A MCPH1 Missense_Mutation p.S459Y 0.37 deleterious(0) possibly_damaging(0.777) TCGA-DA-A95Z-06 8 67976704 67976704 C T CSPP1 Missense_Mutation p.S24F 0.59 deleterious_low_confidence(0.02) benign(0.086) TCGA-DA-A95Z-06 8 69028050 69028050 C T PREX2 Missense_Mutation p.P1070L 0.34 deleterious_low_confidence(0.01) benign(0.033) TCGA-DA-A95Z-06 8 69031678 69031678 C T PREX2 Missense_Mutation p.P1145S 0.32 deleterious(0) benign(0.162) TCGA-DA-A95Z-06 8 70533312 70533312 C T SULF1 Missense_Mutation p.H474Y 0.49 tolerated(0.28) benign(0.021) TCGA-DA-A95Z-06 8 70585213 70585213 C T SLCO5A1 Missense_Mutation p.G813E 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DA-A95Z-06 8 70980487 70980487 C T PRDM14 Missense_Mutation p.G297E 0.34 tolerated(0.22) probably_damaging(0.927) TCGA-DA-A95Z-06 8 71495485 71495485 C T TRAM1 Missense_Mutation p.R322K 0.59 tolerated(0.26) benign(0.016) TCGA-DA-A95Z-06 8 72127666 72127666 C T EYA1 Missense_Mutation p.G518E 0.35 deleterious(0) probably_damaging(0.989) TCGA-DA-A95Z-06 8 73848772 73848772 G A KCNB2 Silent p.G394G 0.33 TCGA-DA-A95Z-06 8 73993379 73993379 C T SBSPON Missense_Mutation p.R95H 0.15 deleterious(0) probably_damaging(0.95) TCGA-DA-A95Z-06 8 77617180 77617180 C T ZFHX4 Missense_Mutation p.S286F 0.50 possibly_damaging(0.683) TCGA-DA-A95Z-06 8 77763772 77763772 C T ZFHX4 Missense_Mutation p.R1539C 0.50 possibly_damaging(0.835) TCGA-DA-A95Z-06 8 77767537 77767537 G A ZFHX4 Missense_Mutation p.D2794N 0.39 probably_damaging(0.991) TCGA-DA-A95Z-06 8 77767939 77767939 G A ZFHX4 Missense_Mutation p.G2928S 0.36 probably_damaging(0.997) TCGA-DA-A95Z-06 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.47 TCGA-DA-A95Z-06 8 80567225 80567225 C T STMN2 Silent p.I136I 0.32 TCGA-DA-A95Z-06 8 8235450 8235450 G T SGK223 Missense_Mutation p.P157T 0.27 probably_damaging(0.996) TCGA-DA-A95Z-06 8 82355673 82355673 A C PMP2 Missense_Mutation p.M120R 0.29 deleterious(0) probably_damaging(0.98) TCGA-DA-A95Z-06 8 8239136 8239136 T C SGK223 Missense_Mutation p.Q41R 0.19 possibly_damaging(0.728) TCGA-DA-A95Z-06 8 86393064 86393064 C T CA2 3'UTR 0.59 TCGA-DA-A95Z-06 8 87060724 87060724 C T PSKH2 Silent p.R375R 0.37 TCGA-DA-A95Z-06 8 8875834 8875834 C T ERI1 Missense_Mutation p.P204S 0.51 tolerated(0.09) benign(0.359) TCGA-DA-A95Z-06 8 88886061 88886061 G A DCAF4L2 Missense_Mutation p.R47C 0.52 deleterious(0) possibly_damaging(0.676) TCGA-DA-A95Z-06 9 100139145 100139145 C T CCDC180 Missense_Mutation p.S1692F 0.92 deleterious(0) possibly_damaging(0.683) TCGA-DA-A95Z-06 9 101216286 101216286 C T GABBR2 Missense_Mutation p.E405K 0.89 tolerated(0.26) benign(0.022) TCGA-DA-A95Z-06 9 105767683 105767683 C T CYLC2 Missense_Mutation p.S257L 0.83 tolerated(0.28) unknown(0) TCGA-DA-A95Z-06 9 105767709 105767709 G A CYLC2 Missense_Mutation p.E266K 0.84 tolerated(0.73) unknown(0) TCGA-DA-A95Z-06 9 107288866 107288866 G A OR13C4 Missense_Mutation p.L209F 0.83 tolerated(0.09) benign(0.35) TCGA-DA-A95Z-06 9 107298736 107298736 C T OR13C3 Missense_Mutation p.R120K 0.87 tolerated(1) benign(0.003) TCGA-DA-A95Z-06 9 107456906 107456906 G A OR13D1 Missense_Mutation p.M68I 0.85 tolerated(0.08) benign(0.007) TCGA-DA-A95Z-06 9 108337373 108337373 T G FKTN Missense_Mutation p.F20L 0.84 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-DA-A95Z-06 9 113245931 113245931 G A SVEP1 Missense_Mutation p.P658L 0.83 probably_damaging(0.911) TCGA-DA-A95Z-06 9 114090054 114090054 G A OR2K2 Silent p.I220I 0.84 TCGA-DA-A95Z-06 9 119568006 119568006 G A ASTN2 Silent p.S716S 0.86 TCGA-DA-A95Z-06 9 120466742 120466742 G A TLR4 5'UTR 0.82 TCGA-DA-A95Z-06 9 121929362 121929362 T C BRINP1 Silent p.%3D 0.85 TCGA-DA-A95Z-06 9 121976160 121976160 G A BRINP1 Intron 0.88 TCGA-DA-A95Z-06 9 122075654 122075654 C T BRINP1 5'UTR 0.92 TCGA-DA-A95Z-06 9 123594182 123594182 A T PSMD5 Silent p.I120I 0.84 TCGA-DA-A95Z-06 9 124329471 124329471 G T DAB2IP Nonsense_Mutation p.E2* 0.26 TCGA-DA-A95Z-06 9 125239820 125239820 G A OR1J1 Missense_Mutation p.P129L 0.98 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-DA-A95Z-06 9 125282069 125282069 C T OR1J4 Missense_Mutation p.S217F 0.94 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DA-A95Z-06 9 125330059 125330059 G A OR1L8 Missense_Mutation p.S233F 0.94 deleterious(0.04) possibly_damaging(0.601) TCGA-DA-A95Z-06 9 125759604 125759604 C T RABGAP1 Missense_Mutation p.P390S 0.88 tolerated(0.07) possibly_damaging(0.575) TCGA-DA-A95Z-06 9 125898782 125898782 C T STRBP Missense_Mutation p.G504S 0.82 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 9 127572682 127572682 C T OLFML2A Silent p.F650F 0.79 TCGA-DA-A95Z-06 9 130868656 130868656 C T SLC25A25 Missense_Mutation p.R345W 0.28 deleterious(0) probably_damaging(0.993) TCGA-DA-A95Z-06 9 131020154 131020154 G A GOLGA2 Silent p.L815L 0.88 TCGA-DA-A95Z-06 9 131028271 131028271 C T GOLGA2 Missense_Mutation p.G210E 0.87 deleterious(0.01) possibly_damaging(0.87) TCGA-DA-A95Z-06 9 13119591 13119591 A T MPDZ Missense_Mutation p.D1763E 0.88 deleterious(0) probably_damaging(0.966) TCGA-DA-A95Z-06 9 131367685 131367685 G A SPTAN1 Silent p.G1325G 0.73 TCGA-DA-A95Z-06 9 131395180 131395180 C T SPTAN1 Silent p.F2418F 0.85 TCGA-DA-A95Z-06 9 131395181 131395181 C T SPTAN1 Missense_Mutation p.R2419W 0.85 deleterious(0) benign(0.266) TCGA-DA-A95Z-06 9 132084114 132084114 G A C9orf106 RNA 0.88 TCGA-DA-A95Z-06 9 132988768 132988768 C T NCS1 3'UTR 0.94 TCGA-DA-A95Z-06 9 136083926 136083926 G A OBP2B Missense_Mutation p.P46S 0.95 deleterious(0.02) probably_damaging(0.93) TCGA-DA-A95Z-06 9 136201415 136201415 T G SURF6 Missense_Mutation p.E39D 0.90 tolerated(0.16) benign(0.023) TCGA-DA-A95Z-06 9 136643982 136643982 G A VAV2 Missense_Mutation p.H598Y 0.92 tolerated(0.91) benign(0.1) TCGA-DA-A95Z-06 9 137313638 137313638 C T RXRA Silent p.I299I 0.91 TCGA-DA-A95Z-06 9 138555206 138555206 C T LCN9 Silent p.I13I 0.60 TCGA-DA-A95Z-06 9 139837242 139837242 C T FBXW5 Missense_Mutation p.E169K 0.88 deleterious(0) probably_damaging(0.998) TCGA-DA-A95Z-06 9 140001870 140001870 C T MAN1B1 Nonsense_Mutation p.Q579* 0.86 TCGA-DA-A95Z-06 9 19372205 19372205 T A DENND4C 3'UTR 0.85 TCGA-DA-A95Z-06 9 19550249 19550249 C G SLC24A2 Missense_Mutation p.E455D 0.83 tolerated(0.32) benign(0.001) TCGA-DA-A95Z-06 9 21077297 21077297 G A IFNB1 3'UTR 0.91 TCGA-DA-A95Z-06 9 23701576 23701576 G A ELAVL2 Nonsense_Mutation p.R172* 0.86 TCGA-DA-A95Z-06 9 27190632 27190632 C A TEK Missense_Mutation p.S478Y 0.65 deleterious(0) benign(0.367) TCGA-DA-A95Z-06 9 27229322 27229322 G A TEK 3'UTR 0.86 TCGA-DA-A95Z-06 9 32430509 32430509 C T ACO1 Missense_Mutation p.P555S 0.81 deleterious(0.01) possibly_damaging(0.762) TCGA-DA-A95Z-06 9 33307296 33307296 C T NFX1 Missense_Mutation p.L459F 0.86 deleterious(0.03) possibly_damaging(0.753) TCGA-DA-A95Z-06 9 33462658 33462658 G A NOL6 3'UTR 0.83 TCGA-DA-A95Z-06 9 33467120 33467120 G A NOL6 Silent p.L622L 0.89 TCGA-DA-A95Z-06 9 34371567 34371567 A G KIAA1161 Missense_Mutation p.S425P 1.00 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 9 34506860 34506860 C T DNAI1 Silent p.D433D 0.92 TCGA-DA-A95Z-06 9 35749252 35749252 G A RGP1 5'Flank 0.73 TCGA-DA-A95Z-06 9 37744586 37744586 C A FRMPD1 Missense_Mutation p.P853T 0.89 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 9 37782072 37782072 G A EXOSC3 Silent p.V179V 0.26 TCGA-DA-A95Z-06 9 4118468 4118468 G A GLIS3 Missense_Mutation p.S337L 0.32 deleterious(0) probably_damaging(0.99) TCGA-DA-A95Z-06 9 4684905 4684905 G T CDC37L1 Missense_Mutation p.C54F 0.87 deleterious(0.03) probably_damaging(0.959) TCGA-DA-A95Z-06 9 69391143 69391143 C T ANKRD20A4 Silent p.I217I 0.26 TCGA-DA-A95Z-06 9 71687732 71687732 C T FXN 3'UTR 0.85 TCGA-DA-A95Z-06 9 71835820 71835820 G A TJP2 Silent p.R151R 0.77 TCGA-DA-A95Z-06 9 72131203 72131203 C T APBA1 Silent p.G308G 0.92 TCGA-DA-A95Z-06 9 77249650 77249650 G A RORB Missense_Mutation p.R66Q 0.32 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 9 77257334 77257334 G A RORB Silent p.V80V 0.87 TCGA-DA-A95Z-06 9 77377950 77377950 C T TRPM6 Missense_Mutation p.D1213N 0.83 deleterious(0) probably_damaging(1) TCGA-DA-A95Z-06 9 77683973 77683973 G A NMRK1 Silent p.G145G 0.88 TCGA-DA-A95Z-06 9 78796314 78796314 G A PCSK5 Silent p.R668R 0.79 TCGA-DA-A95Z-06 9 78968967 78968967 G A PCSK5 Missense_Mutation p.E1669K 0.93 tolerated(0.44) benign(0.008) TCGA-DA-A95Z-06 9 79322834 79322834 G A PRUNE2 Silent p.F1452F 0.92 TCGA-DA-A95Z-06 9 79929415 79929415 C T VPS13A Missense_Mutation p.S1416F 0.80 tolerated(0.09) benign(0.001) TCGA-DA-A95Z-06 9 82336799 82336799 C T TLE4 Missense_Mutation p.S661F 0.24 deleterious(0.01) probably_damaging(1) TCGA-DA-A95Z-06 9 88651346 88651346 C T GOLM1 Missense_Mutation p.G225E 0.28 tolerated(0.26) benign(0.006) TCGA-DA-A95Z-06 9 95048820 95048820 G A IARS Silent p.V159V 0.89 TCGA-DA-A95Z-06 9 95277064 95277064 G A ECM2 Silent p.P301P 0.85 TCGA-DA-A95Z-06 9 95838132 95838132 C T SUSD3 Missense_Mutation p.S52F 0.84 deleterious(0) probably_damaging(0.984) TCGA-DA-A95Z-06 9 96051383 96051383 C T WNK2 Silent p.L1486L 0.90 TCGA-DA-A95Z-06 X 105179309 105179309 C T NRK Missense_Mutation p.S1217F 0.90 deleterious(0.03) probably_damaging(0.996) TCGA-DA-A95Z-06 X 105190368 105190368 G A NRK Missense_Mutation p.R1423K 0.97 tolerated(0.11) benign(0.004) TCGA-DA-A95Z-06 X 105450652 105450652 G A MUM1L1 Silent p.V409V 1.00 TCGA-DA-A95Z-06 X 106845716 106845716 G A FRMPD3 Missense_Mutation p.D1516N 0.88 tolerated(0.06) possibly_damaging(0.687) TCGA-DA-A95Z-06 X 107909764 107909764 G A COL4A5 Missense_Mutation p.E1165K 0.75 unknown(0) TCGA-DA-A95Z-06 X 107930770 107930770 C T COL4A5 Silent p.P1458P 0.87 TCGA-DA-A95Z-06 X 107930771 107930771 C T COL4A5 Missense_Mutation p.P1459S 0.88 probably_damaging(0.994) TCGA-DA-A95Z-06 X 107977206 107977206 G A IRS4 Missense_Mutation p.P790L 0.87 deleterious(0.03) unknown(0) TCGA-DA-A95Z-06 X 110494207 110494207 G A CAPN6 Missense_Mutation p.P366S 0.91 tolerated(0.05) probably_damaging(0.96) TCGA-DA-A95Z-06 X 117043543 117043543 C T KLHL13 Missense_Mutation p.D366N 0.85 tolerated(0.26) benign(0.175) TCGA-DA-A95Z-06 X 117714123 117714123 C T DOCK11 Missense_Mutation p.P526S 0.90 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A95Z-06 X 117815051 117815051 G A DOCK11 Missense_Mutation p.R1901K 0.89 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A95Z-06 X 119293111 119293111 G A RHOXF2 Nonsense_Mutation p.W90* 0.87 TCGA-DA-A95Z-06 X 119410745 119410745 C T TMEM255A Missense_Mutation p.D248N 0.96 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 X 119660535 119660535 G A CUL4B 3'UTR 0.85 TCGA-DA-A95Z-06 X 130218977 130218977 C T ARHGAP36 Silent p.F298F 0.91 TCGA-DA-A95Z-06 X 131219740 131219740 C T FRMD7 Missense_Mutation p.E172K 0.89 deleterious(0) possibly_damaging(0.559) TCGA-DA-A95Z-06 X 132162098 132162098 G A USP26 Missense_Mutation p.R51W 0.87 deleterious(0) benign(0.28) TCGA-DA-A95Z-06 X 134303675 134303675 C T CT55 Missense_Mutation p.G41E 0.88 deleterious(0) probably_damaging(0.996) TCGA-DA-A95Z-06 X 134990353 134990353 G A SAGE1 Missense_Mutation p.G422E 0.92 tolerated(0.18) benign(0.065) TCGA-DA-A95Z-06 X 135572373 135572373 G A BRS3 Nonsense_Mutation p.W172* 0.94 TCGA-DA-A95Z-06 X 138864759 138864759 G A ATP11C Silent p.F636F 0.83 TCGA-DA-A95Z-06 X 141291682 141291682 G A MAGEC2 Missense_Mutation p.P31L 0.85 tolerated(0.1) possibly_damaging(0.908) TCGA-DA-A95Z-06 X 1422880 1422880 C T CSF2RA Silent p.V371V 0.62 TCGA-DA-A95Z-06 X 142605293 142605293 C T SPANXN3 5'UTR 0.88 TCGA-DA-A95Z-06 X 14548141 14548141 C T GLRA2 5'UTR 0.87 TCGA-DA-A95Z-06 X 147744163 147744163 G A AFF2 Silent p.L305L 0.90 TCGA-DA-A95Z-06 X 148038032 148038032 C T AFF2 Silent p.L819L 0.92 TCGA-DA-A95Z-06 X 150912344 150912344 G A CNGA2 Missense_Mutation p.D457N 0.93 tolerated(0.18) benign(0.079) TCGA-DA-A95Z-06 X 151128445 151128445 G T GABRE Missense_Mutation p.S217Y 0.97 tolerated(0.07) probably_damaging(0.995) TCGA-DA-A95Z-06 X 155234186 155234186 C T IL9R Missense_Mutation p.L179F 0.33 deleterious(0.05) possibly_damaging(0.673) TCGA-DA-A95Z-06 X 16657313 16657313 C A CTPS2 Silent p.L450L 0.16 TCGA-DA-A95Z-06 X 18221903 18221903 G A BEND2 Missense_Mutation p.P209S 0.88 deleterious(0) probably_damaging(0.999) TCGA-DA-A95Z-06 X 26157817 26157817 G A MAGEB18 Missense_Mutation p.D239N 0.94 deleterious(0) benign(0.19) TCGA-DA-A95Z-06 X 27766287 27766287 C T DCAF8L2 Silent p.I425I 0.89 TCGA-DA-A95Z-06 X 2832783 2832783 G A ARSD Intron 0.30 TCGA-DA-A95Z-06 X 36007496 36007496 C T CXorf22 Missense_Mutation p.S925F 0.96 deleterious(0) probably_damaging(0.98) TCGA-DA-A95Z-06 X 36162878 36162878 C T CHDC2 Silent p.S487S 0.88 TCGA-DA-A95Z-06 X 37026933 37026933 G A FAM47C Silent p.L150L 0.90 TCGA-DA-A95Z-06 X 37953547 37953547 G A SYTL5 Splice_Site p.X278_splice 0.82 TCGA-DA-A95Z-06 X 38145088 38145114 TTTTCTTCTCCTTCCCCCTCCTTTTCC - RPGR In_Frame_Del p.R1046_N1055delinsS 0.86 TCGA-DA-A95Z-06 X 41205595 41205595 C T DDX3X Nonsense_Mutation p.Q477* 0.89 TCGA-DA-A95Z-06 X 47976491 47976491 G A SSX6 3'Flank 0.89 TCGA-DA-A95Z-06 X 48368194 48368194 C T PORCN 5'UTR 1.00 TCGA-DA-A95Z-06 X 49956997 49956997 G A AKAP4 Silent p.P789P 1.00 TCGA-DA-A95Z-06 X 50052151 50052151 C T CCNB3 Nonsense_Mutation p.Q328* 0.94 TCGA-DA-A95Z-06 X 50377549 50377549 A G SHROOM4 Silent p.G508G 0.77 TCGA-DA-A95Z-06 X 53578331 53578331 C T HUWE1 Missense_Mutation p.A2998T 0.83 benign(0.001) TCGA-DA-A95Z-06 X 54956161 54956161 A C TRO Missense_Mutation p.T1002P 0.82 deleterious(0.03) possibly_damaging(0.841) TCGA-DA-A95Z-06 X 5811690 5811690 A C NLGN4X Missense_Mutation p.V540G 0.89 tolerated(0.08) benign(0.098) TCGA-DA-A95Z-06 X 5811691 5811691 C T NLGN4X Missense_Mutation p.V540I 0.91 deleterious(0.04) benign(0.001) TCGA-DA-A95Z-06 X 69455588 69455588 C T AWAT1 Silent p.F33F 0.84 TCGA-DA-A95Z-06 X 70343536 70343536 C T MED12 Silent p.L570L 1.00 TCGA-DA-A95Z-06 X 70344654 70344654 C T MED12 Missense_Mutation p.S672F 0.93 benign(0.056) TCGA-DA-A95Z-06 X 73041768 73041768 G A XIST RNA 0.80 TCGA-DA-A95Z-06 X 73051011 73051011 C T XIST RNA 0.89 TCGA-DA-A95Z-06 X 73061316 73061316 G A XIST RNA 0.93 TCGA-DA-A95Z-06 X 77912898 77912898 T G ZCCHC5 Silent p.A340A 0.92 TCGA-DA-A95Z-06 X 7812018 7812018 G A VCX Silent p.P194P 0.83 TCGA-DA-A95Z-06 X 78216316 78216316 C T P2RY10 Missense_Mutation p.P100L 0.83 deleterious(0) probably_damaging(0.928) TCGA-DA-A95Z-06 X 78216488 78216488 G A P2RY10 Nonsense_Mutation p.W157* 0.84 TCGA-DA-A95Z-06 X 83361431 83361431 G A RPS6KA6 Missense_Mutation p.S436F 0.67 deleterious(0) probably_damaging(0.995) TCGA-DA-A95Z-06 X 84363957 84363957 C T SATL1 Silent p.T6T 1.00 TCGA-DA-A95Z-06 X 86919768 86919768 G A KLHL4 Missense_Mutation p.D644N 0.90 tolerated(0.16) benign(0.137) TCGA-DA-A95Z-06 Y 16734107 16734107 C T NLGN4Y Silent p.F36F 0.90 TCGA-DA-A95Z-06 Y 16941648 16941648 C T NLGN4Y Silent p.L284L 0.82 TCGA-DA-A95Z-06 Y 4967264 4967264 C T PCDH11Y Missense_Mutation p.R549C 0.80 deleterious(0.05) possibly_damaging(0.888) TCGA-DA-A960-01 10 105727517 105727517 A G SLK Missense_Mutation p.N5S 0.47 deleterious(0) probably_damaging(0.997) TCGA-DA-A960-01 10 106918692 106918692 C T SORCS3 Missense_Mutation p.P558S 0.39 deleterious(0) probably_damaging(0.98) TCGA-DA-A960-01 10 108337256 108337256 G A SORCS1 Intron 0.44 TCGA-DA-A960-01 10 114053818 114053818 G A TECTB Missense_Mutation p.G224S 0.35 tolerated(1) possibly_damaging(0.581) TCGA-DA-A960-01 10 115381895 115381895 A G NRAP Silent p.I834I 0.62 TCGA-DA-A960-01 10 115381897 115381897 T A NRAP Missense_Mutation p.I834F 0.60 deleterious(0.03) possibly_damaging(0.756) TCGA-DA-A960-01 10 118101652 118101652 G A CCDC172 Missense_Mutation p.M129I 0.41 tolerated(1) benign(0.002) TCGA-DA-A960-01 10 118383568 118383568 C T PNLIPRP2 Silent p.T54T 0.42 TCGA-DA-A960-01 10 123503121 123503121 C T ATE1 3'UTR 0.50 TCGA-DA-A960-01 10 125521566 125521566 G A CPXM2 Silent p.P533P 0.50 TCGA-DA-A960-01 10 125798122 125798122 C T CHST15 Missense_Mutation p.D367N 0.30 tolerated(0.41) benign(0.009) TCGA-DA-A960-01 10 125798123 125798123 C T CHST15 Silent p.T366T 0.30 TCGA-DA-A960-01 10 131639226 131639226 G A EBF3 Silent p.S472S 0.38 TCGA-DA-A960-01 10 14816427 14816427 G A FAM107B Missense_Mutation p.S79L 0.39 deleterious_low_confidence(0) benign(0.209) TCGA-DA-A960-01 10 16948268 16948268 G A CUBN Missense_Mutation p.H2616Y 0.32 tolerated(1) benign(0.002) TCGA-DA-A960-01 10 21129763 21129763 C T NEBL Missense_Mutation p.D415N 0.51 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 10 21414812 21414812 G A C10orf113 Silent p.F136F 0.37 TCGA-DA-A960-01 10 25279538 25279538 C T ENKUR Missense_Mutation p.D150N 0.40 tolerated(0.1) benign(0.126) TCGA-DA-A960-01 10 26575366 26575366 C T GAD2 Silent p.A443A 0.38 TCGA-DA-A960-01 10 29811465 29811465 G A SVIL Missense_Mutation p.S1088F 0.36 tolerated_low_confidence(0.24) benign(0.211) TCGA-DA-A960-01 10 30739237 30739237 C T MAP3K8 Silent p.F185F 0.37 TCGA-DA-A960-01 10 30739238 30739238 C T MAP3K8 Missense_Mutation p.R186W 0.37 deleterious(0) possibly_damaging(0.817) TCGA-DA-A960-01 10 31134082 31134082 G A ZNF438 Silent p.L765L 0.42 TCGA-DA-A960-01 10 43088732 43088732 G A ZNF33B Missense_Mutation p.P556S 0.38 tolerated(0.42) benign(0.307) TCGA-DA-A960-01 10 49663121 49663121 G A ARHGAP22 Missense_Mutation p.P255L 0.43 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 10 52390828 52390828 C T RP11-50E11.3 RNA 0.47 TCGA-DA-A960-01 10 53822361 53822361 G A PRKG1 Missense_Mutation p.G302E 0.26 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 10 55582419 55582419 G A PCDH15 Silent p.V1691V 0.35 TCGA-DA-A960-01 10 55944895 55944895 G A PCDH15 Missense_Mutation p.S480L 0.41 tolerated(0.2) benign(0.021) TCGA-DA-A960-01 10 5827125 5827125 T A GDI2 Missense_Mutation p.E233D 0.41 deleterious(0.03) possibly_damaging(0.46) TCGA-DA-A960-01 10 61443994 61443994 G A SLC16A9 Missense_Mutation p.S19F 0.29 deleterious(0) probably_damaging(0.996) TCGA-DA-A960-01 10 61847958 61847958 G A ANK3 Nonsense_Mutation p.Q1163* 0.41 TCGA-DA-A960-01 10 64572932 64572932 C T EGR2 3'UTR 0.35 TCGA-DA-A960-01 10 70101407 70101407 G A HNRNPH3 Missense_Mutation p.G281R 0.37 tolerated(0.5) unknown(0) TCGA-DA-A960-01 10 71025507 71025507 G A HKDC1 Missense_Mutation p.D847N 0.42 tolerated(1) benign(0.006) TCGA-DA-A960-01 10 73558971 73558971 C T CDH23 Silent p.I146I 0.43 TCGA-DA-A960-01 10 74096451 74096451 G A DNAJB12 Silent p.S313S 0.39 TCGA-DA-A960-01 10 74684134 74684134 G A OIT3 Missense_Mutation p.G367R 0.47 tolerated(0.08) probably_damaging(0.995) TCGA-DA-A960-01 10 75290233 75290233 G A USP54 Missense_Mutation p.S499F 0.29 deleterious(0) possibly_damaging(0.766) TCGA-DA-A960-01 10 75290523 75290523 C G USP54 Missense_Mutation p.R462S 0.57 deleterious(0.02) probably_damaging(0.996) TCGA-DA-A960-01 10 79581489 79581489 G A DLG5 Missense_Mutation p.P918L 0.31 deleterious(0) benign(0.069) TCGA-DA-A960-01 10 87484300 87484300 G A GRID1 Missense_Mutation p.S556F 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 10 87966293 87966293 G A GRID1 Silent p.V116V 0.41 TCGA-DA-A960-01 10 90582588 90582588 C T ANKRD22 3'UTR 0.64 TCGA-DA-A960-01 10 90770517 90770517 A G FAS Silent p.R171R 0.42 TCGA-DA-A960-01 10 91144581 91144581 G A IFIT1B 3'UTR 0.45 TCGA-DA-A960-01 10 95718927 95718927 C T PIPSL RNA 0.39 TCGA-DA-A960-01 10 95848877 95848877 G A PLCE1 Intron 0.35 TCGA-DA-A960-01 11 101834578 101834578 C T KIAA1377 Missense_Mutation p.P938S 0.60 tolerated(0.22) benign(0) TCGA-DA-A960-01 11 102195745 102195745 G A BIRC3 Missense_Mutation p.E169K 0.54 deleterious(0) possibly_damaging(0.852) TCGA-DA-A960-01 11 102743761 102743761 C T MMP12 RNA 0.55 TCGA-DA-A960-01 11 10825568 10825568 G A EIF4G2 Missense_Mutation p.P194S 0.23 tolerated(0.41) benign(0.012) TCGA-DA-A960-01 11 113102396 113102396 C T NCAM1 Silent p.S422S 0.18 TCGA-DA-A960-01 11 116730064 116730064 G A SIK3 Silent p.H788H 0.32 TCGA-DA-A960-01 11 117309691 117309691 C T DSCAML1 Missense_Mutation p.D1445N 0.19 deleterious(0.02) probably_damaging(1) TCGA-DA-A960-01 11 118128006 118128006 G A MPZL2 Nonsense_Mutation p.Q203* 0.26 TCGA-DA-A960-01 11 118213388 118213388 C T CD3D 5'UTR 0.47 TCGA-DA-A960-01 11 1213509 1213509 G A MUC5AC RNA 0.07 TCGA-DA-A960-01 11 123755201 123755201 G A TMEM225 Silent p.F108F 0.24 TCGA-DA-A960-01 11 123847911 123847911 C A OR10S1 Missense_Mutation p.W163L 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-DA-A960-01 11 124016700 124016700 C T VWA5A 3'UTR 0.33 TCGA-DA-A960-01 11 124440683 124440683 G A OR8A1 Missense_Mutation p.S240N 0.27 tolerated(0.13) benign(0.181) TCGA-DA-A960-01 11 124735550 124735550 C T ROBO3 Missense_Mutation p.S26F 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A960-01 11 124794708 124794708 C T HEPACAM Missense_Mutation p.A115T 0.35 tolerated(0.26) benign(0.019) TCGA-DA-A960-01 11 133789976 133789976 G A IGSF9B Missense_Mutation p.S1215F 0.28 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-DA-A960-01 11 1642986 1642986 G A KRTAP5-4 Missense_Mutation p.S113F 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A960-01 11 1862771 1862771 C T TNNI2 Missense_Mutation p.S180F 0.61 deleterious(0.02) benign(0.015) TCGA-DA-A960-01 11 19256065 19256065 G A E2F8 Missense_Mutation p.S257F 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 11 22398130 22398130 C T SLC17A6 Missense_Mutation p.A442V 0.24 deleterious(0) possibly_damaging(0.617) TCGA-DA-A960-01 11 33083080 33083080 C T TCP11L1 Silent p.S260S 0.15 TCGA-DA-A960-01 11 35453887 35453887 G A PAMR1 3'UTR 0.31 TCGA-DA-A960-01 11 40137302 40137302 C T LRRC4C Missense_Mutation p.E181K 0.25 deleterious(0) probably_damaging(0.987) TCGA-DA-A960-01 11 4661936 4661936 G A OR51D1 Missense_Mutation p.A306T 0.38 deleterious(0) benign(0.437) TCGA-DA-A960-01 11 46750944 46750944 G A F2 Missense_Mutation p.G496E 0.58 deleterious(0) probably_damaging(0.984) TCGA-DA-A960-01 11 46889564 46889564 G A LRP4 Missense_Mutation p.R1685W 0.56 tolerated(0.1) benign(0.153) TCGA-DA-A960-01 11 47282934 47282934 C T NR1H3 Silent p.I214I 0.63 TCGA-DA-A960-01 11 48266786 48266786 G A OR4X2 Missense_Mutation p.S44N 0.58 deleterious(0.02) probably_damaging(0.998) TCGA-DA-A960-01 11 5010898 5010898 C T MMP26 Silent p.F40F 0.35 TCGA-DA-A960-01 11 5142749 5142749 C T OR52A4 RNA 0.42 TCGA-DA-A960-01 11 51515386 51515386 C T OR4C46 Silent p.I35I 0.61 TCGA-DA-A960-01 11 5221061 5221061 G A OR51V1 Silent p.I290I 0.30 TCGA-DA-A960-01 11 5221098 5221098 G A OR51V1 Missense_Mutation p.S278F 0.65 deleterious(0.02) probably_damaging(0.968) TCGA-DA-A960-01 11 5363917 5363917 G A OR51B5 Silent p.L280L 0.63 TCGA-DA-A960-01 11 5462073 5462073 C T OR51I1 Silent p.L224L 0.30 TCGA-DA-A960-01 11 55322720 55322720 G A OR4C15 Missense_Mutation p.R313Q 0.22 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-DA-A960-01 11 55322811 55322811 G A OR4C15 Silent p.R343R 0.60 TCGA-DA-A960-01 11 55432978 55432978 C T OR4C6 Silent p.L112L 0.57 TCGA-DA-A960-01 11 55541105 55541105 C T OR5D13 Silent p.F64F 0.24 TCGA-DA-A960-01 11 55703796 55703796 A T OR5I1 Silent p.I27I 0.25 TCGA-DA-A960-01 11 55861413 55861413 C T OR8I2 Silent p.L210L 0.32 TCGA-DA-A960-01 11 55872626 55872626 C T OR8H2 Silent p.Y36Y 0.24 TCGA-DA-A960-01 11 56380214 56380214 G A OR5M1 Silent p.L255L 0.29 TCGA-DA-A960-01 11 5699562 5699562 C T TRIM5 Missense_Mutation p.E206K 0.36 deleterious(0.02) benign(0.266) TCGA-DA-A960-01 11 57076412 57076412 G A TNKS1BP1 Missense_Mutation p.T1258I 0.58 deleterious(0.03) benign(0.325) TCGA-DA-A960-01 11 57461344 57461344 A T ZDHHC5 Missense_Mutation p.K281M 0.44 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 11 57798800 57798800 C T OR6Q1 Missense_Mutation p.R126C 0.62 deleterious(0.01) benign(0.003) TCGA-DA-A960-01 11 5799794 5799794 C T OR52N5 Missense_Mutation p.G24E 0.65 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 11 58207172 58207172 G A OR5B12 Silent p.F151F 0.53 TCGA-DA-A960-01 11 5842221 5842221 C T OR52N2 Missense_Mutation p.S219F 0.29 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 11 5878218 5878218 G A OR52E8 Nonsense_Mutation p.R239* 0.55 TCGA-DA-A960-01 11 59210740 59210740 C T OR5A1 Silent p.T33T 0.31 TCGA-DA-A960-01 11 59361572 59361572 G A OSBP Missense_Mutation p.R490C 0.25 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 11 60637192 60637192 C T ZP1 Silent p.T167T 0.47 TCGA-DA-A960-01 11 61897585 61897585 C T INCENP Silent p.L196L 0.30 TCGA-DA-A960-01 11 62159748 62159748 C T ASRGL1 Missense_Mutation p.L307F 0.24 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-DA-A960-01 11 62760760 62760760 G T SLC22A8 Silent p.A526A 0.18 TCGA-DA-A960-01 11 6291982 6291982 G A CCKBR Missense_Mutation p.D254N 0.27 tolerated(0.31) benign(0.017) TCGA-DA-A960-01 11 63326037 63326037 C T HRASLS2 Missense_Mutation p.D72N 0.34 tolerated(0.11) benign(0.045) TCGA-DA-A960-01 11 639790 639790 G A DRD4 Missense_Mutation p.D181N 0.80 deleterious(0.05) unknown(0) TCGA-DA-A960-01 11 64679387 64679387 G A ATG2A Silent p.S385S 0.28 TCGA-DA-A960-01 11 66189977 66189977 A G NPAS4 Missense_Mutation p.H128R 0.22 deleterious(0.02) benign(0.092) TCGA-DA-A960-01 11 67218898 67218898 G A GPR152 Missense_Mutation p.P433L 0.18 deleterious_low_confidence(0) benign(0.039) TCGA-DA-A960-01 11 67225864 67225864 G A CABP4 Missense_Mutation p.R225Q 0.63 tolerated(0.37) benign(0.125) TCGA-DA-A960-01 11 6898229 6898229 C T OR10A4 Silent p.A117A 0.37 TCGA-DA-A960-01 11 73073090 73073090 C A ARHGEF17 Silent p.S1500S 0.42 TCGA-DA-A960-01 11 76956520 76956520 G A GDPD4 Silent p.L298L 0.38 TCGA-DA-A960-01 11 822007 822007 C T PNPLA2 Missense_Mutation p.P157L 0.23 deleterious(0.01) probably_damaging(1) TCGA-DA-A960-01 11 82935894 82935894 T A ANKRD42 Intron 0.13 TCGA-DA-A960-01 11 85436082 85436082 G A SYTL2 Missense_Mutation p.P473L 0.25 tolerated(0.3) benign(0.015) TCGA-DA-A960-01 11 85606383 85606383 G A CCDC83 Missense_Mutation p.E187K 0.55 tolerated(0.34) benign(0.015) TCGA-DA-A960-01 11 99715591 99715591 G A CNTN5 Silent p.V95V 0.22 TCGA-DA-A960-01 12 100166828 100166828 C T ANKS1B Missense_Mutation p.E334K 0.86 deleterious(0.02) possibly_damaging(0.787) TCGA-DA-A960-01 12 100813897 100813897 C T SLC17A8 Missense_Mutation p.S577F 0.65 tolerated_low_confidence(0.19) benign(0.013) TCGA-DA-A960-01 12 10205257 10205257 G A CLEC9A 5'UTR 0.24 TCGA-DA-A960-01 12 103310883 103310883 G T PAH Missense_Mutation p.P9Q 0.32 tolerated(0.82) benign(0.001) TCGA-DA-A960-01 12 104071338 104071338 T C STAB2 Silent p.S918S 0.81 TCGA-DA-A960-01 12 10532316 10532316 C T KLRK1 Missense_Mutation p.S75N 0.63 tolerated(0.23) benign(0.299) TCGA-DA-A960-01 12 108045538 108045538 T G BTBD11 Missense_Mutation p.C1027G 0.16 deleterious(0) benign(0.344) TCGA-DA-A960-01 12 109017797 109017797 C T SELPLG Missense_Mutation p.G112E 0.18 tolerated(0.1) unknown(0) TCGA-DA-A960-01 12 109017798 109017798 C T SELPLG Missense_Mutation p.G112R 0.18 tolerated(0.15) unknown(0) TCGA-DA-A960-01 12 10961835 10961835 G A TAS2R9 Silent p.F280F 0.31 TCGA-DA-A960-01 12 111290674 111290674 G A CCDC63 5'UTR 0.28 TCGA-DA-A960-01 12 111924603 111924603 G A ATXN2 Missense_Mutation p.P916S 0.31 probably_damaging(1) TCGA-DA-A960-01 12 113537799 113537799 G A RASAL1 Missense_Mutation p.R786C 0.86 deleterious(0.04) possibly_damaging(0.828) TCGA-DA-A960-01 12 11546203 11546203 C T PRB2 Missense_Mutation p.G270E 0.47 deleterious(0.02) unknown(0) TCGA-DA-A960-01 12 116421991 116421991 G A MED13L Missense_Mutation p.H1509Y 0.19 tolerated(0.29) unknown(0) TCGA-DA-A960-01 12 120636761 120636761 C A RPLP0 Missense_Mutation p.V121F 0.18 deleterious(0) probably_damaging(0.987) TCGA-DA-A960-01 12 122622068 122622068 C T MLXIP Silent p.S695S 0.34 TCGA-DA-A960-01 12 124281375 124281375 A C DNAH10 Missense_Mutation p.Q602P 0.69 benign(0.009) TCGA-DA-A960-01 12 130015712 130015712 C T TMEM132D Missense_Mutation p.R336Q 0.23 tolerated(0.16) benign(0.138) TCGA-DA-A960-01 12 1919475 1919475 C T CACNA2D4 Missense_Mutation p.G897E 0.48 deleterious(0) probably_damaging(0.951) TCGA-DA-A960-01 12 1943527 1943527 C T LRTM2 Silent p.S251S 0.29 TCGA-DA-A960-01 12 21207483 21207483 G A SLCO1B7 Missense_Mutation p.R485K 0.28 tolerated(0.75) benign(0.006) TCGA-DA-A960-01 12 21712099 21712099 C T GYS2 Missense_Mutation p.E412K 0.21 tolerated(0.42) possibly_damaging(0.527) TCGA-DA-A960-01 12 22676398 22676398 G A C2CD5 Silent p.F254F 0.21 TCGA-DA-A960-01 12 33592561 33592561 G A SYT10 5'UTR 0.63 TCGA-DA-A960-01 12 45000953 45000953 C T NELL2 Silent p.T604T 0.19 TCGA-DA-A960-01 12 45429805 45429805 G A DBX2 Missense_Mutation p.P166S 0.24 tolerated(0.08) benign(0.005) TCGA-DA-A960-01 12 46246421 46246421 T - ARID2 Frame_Shift_Del p.T1506Qfs*10 0.86 TCGA-DA-A960-01 12 47471701 47471701 G A AMIGO2 Missense_Mutation p.S362F 0.87 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 12 47629935 47629935 C T PCED1B Silent p.A363A 0.90 TCGA-DA-A960-01 12 4848467 4848467 C T GALNT8 Silent p.I216I 0.62 TCGA-DA-A960-01 12 4920330 4920330 G A KCNA6 Missense_Mutation p.E375K 0.39 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 12 4920548 4920548 C T KCNA6 Silent p.V447V 0.64 TCGA-DA-A960-01 12 4920691 4920691 G A KCNA6 Missense_Mutation p.G495E 0.28 tolerated_low_confidence(0.15) benign(0.077) TCGA-DA-A960-01 12 49251937 49251937 G A RND1 Missense_Mutation p.R181W 0.47 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 12 49434400 49434400 G A KMT2D Missense_Mutation p.P2385S 0.79 probably_damaging(0.998) TCGA-DA-A960-01 12 50471039 50471039 G A ASIC1 Missense_Mutation p.R201Q 0.36 tolerated(0.88) benign(0.002) TCGA-DA-A960-01 12 51844744 51844744 G A SLC4A8 Missense_Mutation p.R72Q 0.53 tolerated(0.16) probably_damaging(0.994) TCGA-DA-A960-01 12 52910582 52910582 C T KRT5 Silent p.K426K 0.33 TCGA-DA-A960-01 12 52967268 52967268 G A KRT74 Silent p.A98A 0.91 TCGA-DA-A960-01 12 53343338 53343338 C T KRT18 Silent p.S127S 0.83 TCGA-DA-A960-01 12 54903683 54903683 C T NCKAP1L Nonsense_Mutation p.Q217* 0.32 TCGA-DA-A960-01 12 55420991 55420991 C T NEUROD4 Silent p.P256P 0.93 TCGA-DA-A960-01 12 5672731 5672731 G A ANO2 Missense_Mutation p.L911F 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A960-01 12 60165032 60165032 G A SLC16A7 Missense_Mutation p.G84S 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A960-01 12 6153467 6153467 G A VWF Missense_Mutation p.P811L 0.26 deleterious(0) probably_damaging(0.995) TCGA-DA-A960-01 12 6232340 6232340 C T VWF Missense_Mutation p.G8E 0.56 tolerated_low_confidence(0.33) benign(0.007) TCGA-DA-A960-01 12 6711175 6711175 G A CHD4 Missense_Mutation p.S130F 0.58 deleterious_low_confidence(0.02) benign(0.013) TCGA-DA-A960-01 12 6883947 6883947 C T LAG3 Missense_Mutation p.P233L 0.52 tolerated(0.09) benign(0.021) TCGA-DA-A960-01 12 73046870 73046870 G A TRHDE Missense_Mutation p.R928Q 0.90 tolerated(0.09) benign(0.32) TCGA-DA-A960-01 12 7469812 7469812 G A ACSM4 Missense_Mutation p.G234S 0.31 deleterious(0.02) possibly_damaging(0.894) TCGA-DA-A960-01 12 7883508 7883508 C T CLEC4C Missense_Mutation p.D128N 0.32 tolerated(1) possibly_damaging(0.734) TCGA-DA-A960-01 12 85466820 85466820 C T LRRIQ1 Missense_Mutation p.T944I 0.84 tolerated(0.22) benign(0) TCGA-DA-A960-01 12 88926249 88926249 G A KITLG Missense_Mutation p.T54I 0.87 deleterious(0.01) benign(0.185) TCGA-DA-A960-01 12 91497832 91497832 C T LUM 3'UTR 0.88 TCGA-DA-A960-01 12 96640771 96640771 C T ELK3 Silent p.F87F 0.94 TCGA-DA-A960-01 12 98987747 98987747 C T SLC25A3 Intron 0.82 TCGA-DA-A960-01 13 101759960 101759960 C T NALCN Silent p.R819R 0.21 TCGA-DA-A960-01 13 103419679 103419679 G A TEX30 Missense_Mutation p.R150C 0.41 tolerated(0.2) possibly_damaging(0.75) TCGA-DA-A960-01 13 106118644 106118644 G A DAOA Missense_Mutation p.E3K 0.34 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-DA-A960-01 13 109445958 109445958 C T MYO16 Silent p.V215V 0.35 TCGA-DA-A960-01 13 110830454 110830454 G A COL4A1 Silent p.G861G 0.40 TCGA-DA-A960-01 13 113824748 113824748 G A PROZ Missense_Mutation p.G221R 0.39 deleterious(0.02) probably_damaging(0.939) TCGA-DA-A960-01 13 114748825 114748825 G A RASA3 Missense_Mutation p.P813L 0.48 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 13 115090998 115090998 C T CHAMP1 Missense_Mutation p.P561S 0.18 tolerated(0.25) benign(0.034) TCGA-DA-A960-01 13 115090999 115090999 C T CHAMP1 Missense_Mutation p.P561L 0.18 deleterious(0.02) possibly_damaging(0.732) TCGA-DA-A960-01 13 19999087 19999087 C T TPTE2 Missense_Mutation p.R489K 0.40 tolerated(0.06) possibly_damaging(0.53) TCGA-DA-A960-01 13 25744427 25744427 G T AMER2 Missense_Mutation p.S444Y 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A960-01 13 25745529 25745529 C T AMER2 Missense_Mutation p.G77S 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-DA-A960-01 13 33679721 33679721 G A STARD13 3'UTR 0.39 TCGA-DA-A960-01 13 36241565 36241565 G A NBEA Missense_Mutation p.G2819E 0.42 deleterious(0.01) benign(0.25) TCGA-DA-A960-01 13 37012232 37012232 C T CCNA1 Silent p.L191L 0.36 TCGA-DA-A960-01 13 37678342 37678342 G A CSNK1A1L 3'UTR 0.31 TCGA-DA-A960-01 13 39265511 39265511 C T FREM2 Missense_Mutation p.R1344C 0.41 deleterious(0.01) probably_damaging(0.917) TCGA-DA-A960-01 13 88328747 88328747 C T SLITRK5 Silent p.S368S 0.46 TCGA-DA-A960-01 13 93879766 93879766 C A GPC6 Silent p.L19L 0.17 TCGA-DA-A960-01 13 97639949 97639949 C T OXGR1 Missense_Mutation p.G22E 0.26 tolerated(1) benign(0.002) TCGA-DA-A960-01 13 98645402 98645402 C T IPO5 Missense_Mutation p.A297V 0.46 tolerated(0.09) possibly_damaging(0.735) TCGA-DA-A960-01 13 98645403 98645403 C T IPO5 Silent p.A297A 0.45 TCGA-DA-A960-01 14 100375813 100375813 C T EML1 Silent p.F431F 0.26 TCGA-DA-A960-01 14 100992251 100992251 C T WDR25 Silent p.I382I 0.50 TCGA-DA-A960-01 14 105353423 105353423 C T CEP170B Silent p.A949A 0.55 TCGA-DA-A960-01 14 106321886 106321886 G A IGHM Silent p.F116F 0.59 TCGA-DA-A960-01 14 106405925 106405925 C T IGHV6-1 Splice_Site p.X17_splice 0.41 TCGA-DA-A960-01 14 106725373 106725373 G A IGHV3-23 Missense_Mutation p.P60L 0.19 deleterious_low_confidence(0.02) probably_damaging(0.967) TCGA-DA-A960-01 14 106757771 106757771 G A IGHV2-26 Missense_Mutation p.S79F 0.32 tolerated(0.55) benign(0.004) TCGA-DA-A960-01 14 106877640 106877640 C T IGHV4-39 Silent p.T118T 0.07 TCGA-DA-A960-01 14 107113951 107113951 G A IGHV3-64 Silent p.T48T 0.24 TCGA-DA-A960-01 14 20020125 20020125 G A POTEM Silent p.F32F 0.17 TCGA-DA-A960-01 14 20345116 20345116 C T OR4K2 Silent p.S230S 0.25 TCGA-DA-A960-01 14 21162218 21162218 C T ANG 3'UTR 0.53 TCGA-DA-A960-01 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.62 tolerated_low_confidence(0.11) benign(0.004) TCGA-DA-A960-01 14 23239776 23239776 C T OXA1L Missense_Mutation p.S319F 0.60 tolerated(0.16) benign(0.443) TCGA-DA-A960-01 14 23842508 23842508 C T IL25 Missense_Mutation p.P61S 0.55 tolerated(0.19) benign(0.029) TCGA-DA-A960-01 14 36039852 36039852 C T RALGAPA1 Silent p.L1983L 0.29 TCGA-DA-A960-01 14 42360670 42360670 G A LRFN5 Missense_Mutation p.G535R 0.57 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 14 52509519 52509519 C T NID2 Silent p.G520G 0.34 TCGA-DA-A960-01 14 59108428 59108428 G A DACT1 Silent p.A199A 0.25 TCGA-DA-A960-01 14 59113639 59113639 C T DACT1 Silent p.F766F 0.25 TCGA-DA-A960-01 14 59945914 59945914 C T L3HYPDH Missense_Mutation p.A222T 0.26 deleterious(0.05) probably_damaging(0.973) TCGA-DA-A960-01 14 62014604 62014604 C T RP11-47I22.4 Silent p.I140I 0.62 TCGA-DA-A960-01 14 64469953 64469953 C T SYNE2 Silent p.F1434F 0.59 TCGA-DA-A960-01 14 64935200 64935200 G A AKAP5 Missense_Mutation p.E30K 0.24 tolerated(0.2) benign(0.002) TCGA-DA-A960-01 14 70633644 70633644 G A SLC8A3 Missense_Mutation p.P499L 0.65 tolerated(0.32) benign(0) TCGA-DA-A960-01 14 75200839 75200839 C T FCF1 Missense_Mutation p.P172S 0.67 deleterious(0.02) possibly_damaging(0.873) TCGA-DA-A960-01 14 75557978 75557978 G A NEK9 Nonsense_Mutation p.R813* 0.31 TCGA-DA-A960-01 14 77844157 77844157 G A SAMD15 Silent p.E132E 0.31 TCGA-DA-A960-01 14 78365456 78365456 C T ADCK1 Missense_Mutation p.A199V 0.28 tolerated(0.97) benign(0.008) TCGA-DA-A960-01 14 88652485 88652485 C T KCNK10 Silent p.K342K 0.24 TCGA-DA-A960-01 14 92474151 92474151 C T TRIP11 Missense_Mutation p.V454I 0.32 tolerated(0.26) benign(0.002) TCGA-DA-A960-01 14 94128959 94128959 G A UNC79 Missense_Mutation p.E2041K 0.64 deleterious(0) possibly_damaging(0.769) TCGA-DA-A960-01 14 94394871 94394871 C T FAM181A Silent p.L142L 0.52 TCGA-DA-A960-01 14 94697003 94697003 T G PPP4R4 Missense_Mutation p.V125G 0.27 deleterious(0) possibly_damaging(0.746) TCGA-DA-A960-01 14 94780446 94780446 C T SERPINA6 Silent p.G180G 0.22 TCGA-DA-A960-01 14 94845784 94845784 C T SERPINA1 Intron 0.31 TCGA-DA-A960-01 14 95035923 95035923 G A SERPINA4 Silent p.T425T 0.65 TCGA-DA-A960-01 14 95582874 95582874 G A DICER1 Silent p.P556P 0.25 TCGA-DA-A960-01 14 95884350 95884350 C T SYNE3 Missense_Mutation p.R914Q 0.30 tolerated(0.61) benign(0.002) TCGA-DA-A960-01 15 20170193 20170193 C T IGHV1OR15-9 Missense_Mutation p.G27R 0.27 deleterious(0) probably_damaging(0.993) TCGA-DA-A960-01 15 20170215 20170215 G A IGHV1OR15-9 Silent p.S19S 0.32 TCGA-DA-A960-01 15 42438339 42438339 C T PLA2G4F Missense_Mutation p.G507E 0.28 deleterious(0.01) benign(0.297) TCGA-DA-A960-01 15 42823784 42823784 G A SNAP23 3'UTR 0.27 TCGA-DA-A960-01 15 43495422 43495422 G A EPB42 Missense_Mutation p.P587L 0.52 tolerated(0.2) possibly_damaging(0.461) TCGA-DA-A960-01 15 48729266 48729266 C T FBN1 Missense_Mutation p.E2130K 0.35 probably_damaging(0.979) TCGA-DA-A960-01 15 50902007 50902007 G A TRPM7 Missense_Mutation p.P811L 0.54 tolerated(0.15) benign(0.058) TCGA-DA-A960-01 15 52537637 52537637 G A MYO5C Missense_Mutation p.R698C 0.29 deleterious(0) probably_damaging(0.971) TCGA-DA-A960-01 15 54305159 54305159 G A UNC13C Missense_Mutation p.G20E 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A960-01 15 58467155 58467155 G A AQP9 Missense_Mutation p.V139M 0.51 tolerated(0.05) benign(0.16) TCGA-DA-A960-01 15 69339162 69339162 G A NOX5 Missense_Mutation p.G550S 0.53 tolerated(0.73) benign(0.079) TCGA-DA-A960-01 15 72172823 72172823 G A MYO9A Silent p.N1825N 0.27 TCGA-DA-A960-01 15 78917631 78917631 G A CHRNB4 Silent p.V447V 0.91 TCGA-DA-A960-01 15 81235313 81235313 G A KIAA1199 Missense_Mutation p.E1243K 0.62 tolerated(0.34) benign(0.184) TCGA-DA-A960-01 15 84257443 84257443 G A SH3GL3 Missense_Mutation p.R253Q 0.25 tolerated(0.29) benign(0.003) TCGA-DA-A960-01 15 84553926 84553926 A C ADAMTSL3 Missense_Mutation p.Q345P 0.56 deleterious(0) possibly_damaging(0.894) TCGA-DA-A960-01 15 85164130 85164130 C T ZSCAN2 Missense_Mutation p.S235F 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A960-01 15 87572141 87572141 G A AGBL1 3'UTR 0.71 TCGA-DA-A960-01 15 89417089 89417089 C G ACAN Silent p.P2450P 0.30 TCGA-DA-A960-01 15 91424808 91424808 C T FURIN Silent p.P695P 0.31 TCGA-DA-A960-01 15 94899296 94899296 C T MCTP2 Intron 0.25 TCGA-DA-A960-01 16 11941533 11941533 C T RSL1D1 Missense_Mutation p.V126I 0.19 tolerated(1) benign(0.02) TCGA-DA-A960-01 16 1270983 1270983 G A CACNA1H Missense_Mutation p.D2351N 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-DA-A960-01 16 14576685 14576685 C T PARN Splice_Site p.X494_splice 0.24 TCGA-DA-A960-01 16 14761565 14761565 C T BFAR Missense_Mutation p.P412S 0.50 tolerated(0.07) possibly_damaging(0.725) TCGA-DA-A960-01 16 15225067 15225067 G A RP11-1186N24.5 RNA 0.46 TCGA-DA-A960-01 16 19475306 19475306 A T TMC5 Missense_Mutation p.N482I 0.41 deleterious(0.02) probably_damaging(0.989) TCGA-DA-A960-01 16 19547898 19547898 C T CCP110 Nonsense_Mutation p.Q303* 0.18 TCGA-DA-A960-01 16 20380861 20380861 C T PDILT Missense_Mutation p.E357K 0.19 tolerated(0.21) benign(0.024) TCGA-DA-A960-01 16 20974983 20974983 G A DNAH3 Missense_Mutation p.P3408L 0.15 deleterious(0.03) benign(0.169) TCGA-DA-A960-01 16 22151516 22151516 G A VWA3A Silent p.L778L 0.12 TCGA-DA-A960-01 16 22926994 22926994 C T HS3ST2 3'UTR 0.59 TCGA-DA-A960-01 16 23632787 23632787 G A PALB2 Silent p.N1003N 0.43 TCGA-DA-A960-01 16 23767384 23767384 G A CHP2 Silent p.G74G 0.54 TCGA-DA-A960-01 16 2483043 2483043 C T CCNF Missense_Mutation p.P85S 0.27 tolerated(0.1) benign(0.059) TCGA-DA-A960-01 16 30133240 30133245 GAGCGT - MAPK3 In_Frame_Del p.T85_L86del 0.39 TCGA-DA-A960-01 16 3065682 3065682 T G CLDN6 Missense_Mutation p.K114T 0.14 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 16 31234232 31234232 G A TRIM72 Silent p.Q275Q 0.17 TCGA-DA-A960-01 16 31498755 31498755 G A SLC5A2 Intron 0.26 TCGA-DA-A960-01 16 31505006 31505006 G A C16orf58 Silent p.L292L 0.48 TCGA-DA-A960-01 16 4504834 4504834 C T DNAJA3 Silent p.S454S 0.13 TCGA-DA-A960-01 16 4731625 4731625 C T MGRN1 Silent p.S402S 0.43 TCGA-DA-A960-01 16 48145803 48145803 C T ABCC12 Missense_Mutation p.E670K 0.60 deleterious(0.03) benign(0.04) TCGA-DA-A960-01 16 48261809 48261809 G A ABCC11 Silent p.T101T 0.30 TCGA-DA-A960-01 16 4834018 4834018 C T SEPT12 Silent p.Q142Q 0.48 TCGA-DA-A960-01 16 4902929 4902929 C T UBN1 Missense_Mutation p.P4L 0.32 deleterious(0) benign(0.193) TCGA-DA-A960-01 16 50338316 50338316 G A ADCY7 Missense_Mutation p.G472R 0.35 tolerated(0.6) possibly_damaging(0.878) TCGA-DA-A960-01 16 51171260 51171260 C T SALL1 Silent p.A1246A 0.27 TCGA-DA-A960-01 16 52473772 52473772 C T TOX3 Missense_Mutation p.G366R 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-DA-A960-01 16 55798780 55798780 G A CES1P1 RNA 1.00 TCGA-DA-A960-01 16 56902283 56902283 C T SLC12A3 Silent p.I168I 0.33 TCGA-DA-A960-01 16 56904081 56904081 C T SLC12A3 Silent p.F225F 0.61 TCGA-DA-A960-01 16 68023256 68023256 C T DPEP2 Missense_Mutation p.G347E 0.22 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 16 69988347 69988347 C A CLEC18A Missense_Mutation p.N109K 0.50 deleterious(0) possibly_damaging(0.7) TCGA-DA-A960-01 16 70841684 70841684 G A HYDIN Silent p.I5055I 0.63 TCGA-DA-A960-01 16 71406125 71406125 C T CALB2 Missense_Mutation p.S55F 0.27 deleterious(0.01) benign(0.427) TCGA-DA-A960-01 16 71736526 71736526 G A PHLPP2 Silent p.L131L 0.20 TCGA-DA-A960-01 16 72188190 72188190 G A PMFBP1 Missense_Mutation p.R112C 0.24 deleterious(0.03) benign(0.002) TCGA-DA-A960-01 16 737171 737171 C T WDR24 Missense_Mutation p.G302E 0.31 deleterious(0) probably_damaging(0.988) TCGA-DA-A960-01 16 77359844 77359844 G A ADAMTS18 Missense_Mutation p.R651W 0.26 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 16 77401457 77401457 G A ADAMTS18 Missense_Mutation p.S220F 0.31 deleterious(0.05) benign(0.003) TCGA-DA-A960-01 16 81295852 81295852 G A BCMO1 Silent p.R145R 0.33 TCGA-DA-A960-01 16 83711832 83711832 C T CDH13 Missense_Mutation p.S482F 0.74 deleterious(0) probably_damaging(0.977) TCGA-DA-A960-01 16 84203682 84203682 C T DNAAF1 Silent p.L416L 0.28 TCGA-DA-A960-01 16 8722950 8722950 A G METTL22 Missense_Mutation p.H166R 0.44 tolerated(0.57) benign(0.004) TCGA-DA-A960-01 16 8722951 8722951 C T METTL22 Silent p.H166H 0.44 TCGA-DA-A960-01 16 9858184 9858184 C T GRIN2A Missense_Mutation p.E1073K 0.42 deleterious_low_confidence(0.04) benign(0.338) TCGA-DA-A960-01 17 10297744 10297744 G A MYH8 Missense_Mutation p.A1663V 0.76 deleterious(0.02) possibly_damaging(0.861) TCGA-DA-A960-01 17 10352233 10352233 C T MYH4 Missense_Mutation p.R1438Q 0.87 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A960-01 17 10436682 10436682 C T MYH2 Silent p.L787L 0.84 TCGA-DA-A960-01 17 12016641 12016641 C T MAP2K4 Silent p.A259A 0.91 TCGA-DA-A960-01 17 12846958 12846958 T G ARHGAP44 Silent p.A235A 0.52 TCGA-DA-A960-01 17 1417164 1417165 - C INPP5K Splice_Site p.X51_splice 0.43 TCGA-DA-A960-01 17 18149068 18149071 GTGT - FLII Frame_Shift_Del p.T1164Vfs*14 0.59 TCGA-DA-A960-01 17 18918487 18918487 G A SLC5A10 Missense_Mutation p.E422K 1.00 deleterious(0) possibly_damaging(0.832) TCGA-DA-A960-01 17 26938425 26938425 G A SGK494 Silent p.L296L 1.00 TCGA-DA-A960-01 17 29325832 29325832 C T RNF135 Silent p.L308L 0.94 TCGA-DA-A960-01 17 2996108 2996108 G A OR1D2 Silent p.F61F 0.86 TCGA-DA-A960-01 17 30349204 30349204 G A LRRC37B Missense_Mutation p.D347N 0.91 deleterious(0.04) probably_damaging(0.937) TCGA-DA-A960-01 17 3343427 3343427 C T SPATA22 3'UTR 0.81 TCGA-DA-A960-01 17 33456653 33456653 G A FNDC8 Silent p.V266V 0.68 TCGA-DA-A960-01 17 33457432 33457432 G A FNDC8 Silent p.L318L 0.21 TCGA-DA-A960-01 17 33768627 33768627 C T SLFN13 Missense_Mutation p.R626K 0.54 tolerated(0.36) benign(0.009) TCGA-DA-A960-01 17 37187858 37187858 C T CTD-2206N4.2 5'Flank 0.96 TCGA-DA-A960-01 17 3721761 3721761 A C C17orf85 Missense_Mutation p.V369G 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.796) TCGA-DA-A960-01 17 37898600 37898600 G A GRB7 Missense_Mutation p.D39N 0.89 deleterious(0.04) unknown(0) TCGA-DA-A960-01 17 38956203 38956203 G A KRT28 5'UTR 0.76 TCGA-DA-A960-01 17 39274248 39274248 G A KRTAP4-11 Missense_Mutation p.S107F 0.15 deleterious(0) unknown(0) TCGA-DA-A960-01 17 40039420 40039420 G A ACLY Silent p.I740I 0.98 TCGA-DA-A960-01 17 42475253 42475253 G A GPATCH8 Missense_Mutation p.H1398Y 1.00 deleterious(0.03) unknown(0) TCGA-DA-A960-01 17 42800338 42800338 C T DBF4B Missense_Mutation p.P58L 0.93 deleterious(0.03) possibly_damaging(0.8) TCGA-DA-A960-01 17 4576384 4576384 C T PELP1 Silent p.R634R 0.71 TCGA-DA-A960-01 17 4643900 4643900 C T ZMYND15 Silent p.F19F 0.52 TCGA-DA-A960-01 17 48187510 48187510 C T PDK2 3'UTR 1.00 TCGA-DA-A960-01 17 48193376 48193376 A G SAMD14 Missense_Mutation p.L193P 0.91 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 17 48560828 48560828 C T RSAD1 Silent p.V344V 0.96 TCGA-DA-A960-01 17 48560829 48560829 C T RSAD1 Missense_Mutation p.P345S 0.96 tolerated(0.74) benign(0.004) TCGA-DA-A960-01 17 60348750 60348750 C T TBC1D3P2 RNA 0.83 TCGA-DA-A960-01 17 61886295 61886295 T - DDX42 Frame_Shift_Del p.V381Cfs*7 0.49 TCGA-DA-A960-01 17 61987626 61987626 A G CSHL1 Missense_Mutation p.F123L 0.73 tolerated(0.54) benign(0.002) TCGA-DA-A960-01 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.66 deleterious(0) possibly_damaging(0.817) TCGA-DA-A960-01 17 66519054 66519054 C T PRKAR1A Missense_Mutation p.S112F 0.91 tolerated(0.08) benign(0.002) TCGA-DA-A960-01 17 7077004 7077004 C T ASGR1 Missense_Mutation p.A284T 0.87 tolerated(0.57) benign(0.002) TCGA-DA-A960-01 17 71281605 71281605 G A CDC42EP4 Silent p.F345F 0.93 TCGA-DA-A960-01 17 72588188 72588188 G A C17orf77 Translation_Start_Site p.M1? 0.94 deleterious_low_confidence(0) benign(0.043) TCGA-DA-A960-01 17 72613549 72613549 C T CD300E Silent p.L32L 0.83 TCGA-DA-A960-01 17 74134193 74134193 G A FOXJ1 Silent p.I169I 0.85 TCGA-DA-A960-01 17 74774504 74774504 C T MFSD11 3'UTR 0.23 TCGA-DA-A960-01 17 76045832 76045832 G A TNRC6C Missense_Mutation p.G230E 0.91 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 17 7658055 7658055 C T DNAH2 Intron 0.93 TCGA-DA-A960-01 17 79618089 79618089 C T PDE6G 3'UTR 0.09 TCGA-DA-A960-01 17 80320002 80320002 C T TEX19 5'UTR 0.92 TCGA-DA-A960-01 18 11868625 11868625 G A GNAL Missense_Mutation p.E332K 0.44 deleterious(0.01) possibly_damaging(0.465) TCGA-DA-A960-01 18 13087221 13087221 C T CEP192 Missense_Mutation p.P1941L 0.20 deleterious(0.04) probably_damaging(0.951) TCGA-DA-A960-01 18 13885039 13885039 C T MC2R Missense_Mutation p.G160E 0.05 tolerated(0.07) possibly_damaging(0.841) TCGA-DA-A960-01 18 14763916 14763916 C A ANKRD30B Nonsense_Mutation p.S351* 0.29 TCGA-DA-A960-01 18 19996009 19996009 G A CTAGE1 Missense_Mutation p.P589L 0.50 tolerated(0.12) benign(0.104) TCGA-DA-A960-01 18 28660176 28660176 G A DSC2 Missense_Mutation p.P469L 0.47 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 18 28989464 28989464 A C DSG4 Missense_Mutation p.E661D 0.17 tolerated(0.21) benign(0.005) TCGA-DA-A960-01 18 30992050 30992050 C T CCDC178 Translation_Start_Site p.M1? 0.37 tolerated_low_confidence(0.19) benign(0.346) TCGA-DA-A960-01 18 31319793 31319793 G A ASXL3 Missense_Mutation p.E809K 0.55 benign(0.385) TCGA-DA-A960-01 18 33778712 33778712 C T MOCOS Missense_Mutation p.R98C 0.16 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 18 43490545 43490545 C T EPG5 Silent p.E1382E 0.24 TCGA-DA-A960-01 18 46623827 46623827 C T DYM Missense_Mutation p.R602Q 0.31 tolerated(0.64) benign(0.021) TCGA-DA-A960-01 18 48327860 48327860 C T MRO Silent p.L162L 0.22 TCGA-DA-A960-01 18 50961516 50961516 C T DCC Missense_Mutation p.R1056C 0.35 deleterious(0.02) possibly_damaging(0.856) TCGA-DA-A960-01 18 52575076 52575076 G T CCDC68 Silent p.T297T 0.29 TCGA-DA-A960-01 18 52605290 52605290 C T CCDC68 Missense_Mutation p.M81I 0.43 tolerated(0.35) benign(0.029) TCGA-DA-A960-01 18 55143800 55143800 G A ONECUT2 Missense_Mutation p.E454K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A960-01 18 59221488 59221488 G A CDH20 Missense_Mutation p.E656K 0.40 deleterious(0.01) benign(0.246) TCGA-DA-A960-01 18 59483502 59483502 G A RNF152 Silent p.S65S 0.56 TCGA-DA-A960-01 18 59824381 59824381 G A PIGN Silent p.I141I 0.44 TCGA-DA-A960-01 18 61166456 61166456 A G SERPINB5 Missense_Mutation p.K224R 0.53 deleterious(0.04) possibly_damaging(0.871) TCGA-DA-A960-01 18 61264422 61264422 C T SERPINB13 Missense_Mutation p.S334F 0.46 deleterious(0) probably_damaging(0.928) TCGA-DA-A960-01 18 61326631 61326633 ACC TACT SERPINB3 Splice_Site p.X117_splice 0.19 TCGA-DA-A960-01 18 61471947 61471947 G A SERPINB7 3'UTR 0.57 TCGA-DA-A960-01 18 61597289 61597289 G A SERPINB10 Silent p.Q167Q 0.47 TCGA-DA-A960-01 18 65178609 65178609 G A DSEL Silent p.F1089F 0.38 TCGA-DA-A960-01 18 67563091 67563091 G A CD226 Silent p.F191F 0.49 TCGA-DA-A960-01 18 6947244 6947244 C T LAMA1 Missense_Mutation p.R2921Q 0.56 deleterious(0.02) probably_damaging(0.978) TCGA-DA-A960-01 18 6961645 6961645 G A LAMA1 Silent p.I2522I 0.37 TCGA-DA-A960-01 18 70417404 70417404 C T NETO1 Missense_Mutation p.M478I 0.54 deleterious_low_confidence(0.03) probably_damaging(0.937) TCGA-DA-A960-01 18 72775840 72775840 G A ZNF407 Missense_Mutation p.V2055M 0.53 deleterious(0.01) benign(0.057) TCGA-DA-A960-01 18 77193653 77193653 C T NFATC1 Missense_Mutation p.P421L 0.33 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 18 9257470 9257470 C T ANKRD12 Missense_Mutation p.P1402L 0.42 tolerated_low_confidence(0.08) benign(0.15) TCGA-DA-A960-01 18 9570618 9570618 G A PPP4R1 Silent p.L370L 0.45 TCGA-DA-A960-01 18 9886914 9886914 G A TXNDC2 Silent p.E146E 0.21 TCGA-DA-A960-01 19 10251533 10251533 C T DNMT1 Silent p.E1149E 0.46 TCGA-DA-A960-01 19 10692495 10692495 G A AP1M2 Silent p.I109I 0.19 TCGA-DA-A960-01 19 11915421 11915421 C T ZNF491 5'UTR 0.18 TCGA-DA-A960-01 19 12429507 12429507 C T ZNF563 Silent p.T444T 0.22 TCGA-DA-A960-01 19 13419266 13419266 C T CACNA1A Missense_Mutation p.R582Q 0.30 probably_damaging(0.947) TCGA-DA-A960-01 19 14077310 14077310 G A RFX1 Silent p.F628F 0.52 TCGA-DA-A960-01 19 14991274 14991274 C T OR7A17 Silent p.K298K 0.18 TCGA-DA-A960-01 19 16301778 16301778 C T FAM32A 3'UTR 0.16 TCGA-DA-A960-01 19 17107970 17107970 G A CPAMD8 Missense_Mutation p.S396F 0.30 deleterious(0) probably_damaging(0.968) TCGA-DA-A960-01 19 17948796 17948796 C T JAK3 Missense_Mutation p.R549Q 0.47 tolerated(0.26) benign(0.309) TCGA-DA-A960-01 19 18375913 18375913 G A KIAA1683 Missense_Mutation p.P813S 0.46 tolerated(0.51) benign(0.004) TCGA-DA-A960-01 19 18899036 18899036 C T COMP Silent p.G320G 0.42 TCGA-DA-A960-01 19 20229365 20229365 C T ZNF90 Silent p.I334I 0.51 TCGA-DA-A960-01 19 22574487 22574487 G A ZNF98 Missense_Mutation p.P517L 0.27 tolerated(0.1) probably_damaging(0.996) TCGA-DA-A960-01 19 22574488 22574488 G A ZNF98 Missense_Mutation p.P517S 0.26 deleterious(0.05) probably_damaging(0.985) TCGA-DA-A960-01 19 23544276 23544276 G A ZNF91 Missense_Mutation p.S502F 0.45 tolerated(0.66) benign(0.017) TCGA-DA-A960-01 19 2853204 2853204 C T ZNF555 Nonsense_Mutation p.Q381* 0.54 TCGA-DA-A960-01 19 2873571 2873571 A G ZNF556 Silent p.K27K 0.40 TCGA-DA-A960-01 19 3586958 3586958 C T GIPC3 Silent p.F186F 0.33 TCGA-DA-A960-01 19 36259365 36259365 C T C19orf55 3'UTR 0.42 TCGA-DA-A960-01 19 3750626 3750626 G A TJP3 Missense_Mutation p.D911N 0.39 deleterious(0.04) benign(0.059) TCGA-DA-A960-01 19 38692614 38692614 C T SIPA1L3 Silent p.T1699T 0.37 TCGA-DA-A960-01 19 39002713 39002713 G A RYR1 Silent p.G3058G 0.44 TCGA-DA-A960-01 19 39664305 39664305 C T PAK4 Silent p.T251T 0.44 TCGA-DA-A960-01 19 40542424 40542424 C T ZNF780B Silent p.E114E 0.19 TCGA-DA-A960-01 19 40721042 40721042 C T MAP3K10 Missense_Mutation p.S903F 0.33 deleterious(0) probably_damaging(0.997) TCGA-DA-A960-01 19 41600328 41600328 C T CYP2A13 Silent p.F384F 0.29 TCGA-DA-A960-01 19 4182586 4182586 C T SIRT6 5'UTR 0.30 TCGA-DA-A960-01 19 42270170 42270170 G A CEACAM6 3'UTR 0.52 TCGA-DA-A960-01 19 42879999 42879999 C T MEGF8 Missense_Mutation p.P2470L 0.67 tolerated(0.33) benign(0.046) TCGA-DA-A960-01 19 43420459 43420459 T A PSG6 Missense_Mutation p.Y82F 0.25 deleterious(0.03) possibly_damaging(0.761) TCGA-DA-A960-01 19 43999435 43999435 G A PHLDB3 Silent p.F336F 0.49 TCGA-DA-A960-01 19 44103122 44103122 C T ZNF576 Silent p.T75T 0.20 TCGA-DA-A960-01 19 44169470 44169470 G A PLAUR Missense_Mutation p.S103F 0.20 tolerated(0.2) benign(0.053) TCGA-DA-A960-01 19 45322681 45322681 G A BCAM Missense_Mutation p.D518N 0.42 tolerated(0.07) benign(0.086) TCGA-DA-A960-01 19 4546421 4546421 G A SEMA6B Silent p.F554F 0.42 TCGA-DA-A960-01 19 45541005 45541005 C T RELB Missense_Mutation p.A566V 0.14 deleterious_low_confidence(0) benign(0.115) TCGA-DA-A960-01 19 46733698 46733698 C T IGFL1 Missense_Mutation p.P83S 0.45 tolerated(0.06) benign(0.36) TCGA-DA-A960-01 19 47127033 47127033 G A PTGIR Silent p.F150F 0.56 TCGA-DA-A960-01 19 47984031 47984031 C T KPTN Silent p.T195T 0.22 TCGA-DA-A960-01 19 48185338 48185338 C T GLTSCR1 Missense_Mutation p.P738S 0.80 unknown(0) TCGA-DA-A960-01 19 48305330 48305330 C T TPRX1 Missense_Mutation p.G313D 0.26 tolerated(0.58) probably_damaging(0.969) TCGA-DA-A960-01 19 501711 501711 C T MADCAM1 Missense_Mutation p.S237F 0.33 tolerated(0.05) unknown(0) TCGA-DA-A960-01 19 51165602 51165602 G A SHANK1 Missense_Mutation p.R2036C 0.36 unknown(0) TCGA-DA-A960-01 19 51917035 51917035 C T SIGLEC10 Silent p.P584P 0.41 TCGA-DA-A960-01 19 52659540 52659540 C A ZNF836 Nonsense_Mutation p.G466* 0.29 TCGA-DA-A960-01 19 53344287 53344287 G A ZNF468 Silent p.F420F 0.18 TCGA-DA-A960-01 19 53960440 53960440 G C ZNF761 RNA 0.29 TCGA-DA-A960-01 19 54515603 54515603 C T CACNG6 3'UTR 0.33 TCGA-DA-A960-01 19 54783858 54783858 C T LILRB2 Missense_Mutation p.S48N 0.43 deleterious(0.01) benign(0.154) TCGA-DA-A960-01 19 54962519 54962519 C T LENG8 5'UTR 0.22 TCGA-DA-A960-01 19 55177294 55177294 C T LILRB4 Silent p.I262I 0.46 TCGA-DA-A960-01 19 55693032 55693032 G A PTPRH 3'UTR 0.60 TCGA-DA-A960-01 19 56180959 56180959 C T U2AF2 Silent p.I398I 0.45 TCGA-DA-A960-01 19 56296989 56296989 G A NLRP11 3'UTR 0.22 TCGA-DA-A960-01 19 56382227 56382227 G A NLRP4 Missense_Mutation p.E797K 0.46 tolerated(0.46) benign(0.01) TCGA-DA-A960-01 19 56424240 56424240 C T NLRP13 Missense_Mutation p.E315K 0.43 deleterious(0) possibly_damaging(0.657) TCGA-DA-A960-01 19 56538914 56538914 C T NLRP5 Missense_Mutation p.H439Y 0.17 deleterious(0) possibly_damaging(0.453) TCGA-DA-A960-01 19 57036428 57036428 C T ZNF471 Missense_Mutation p.S331L 0.27 deleterious(0) probably_damaging(0.968) TCGA-DA-A960-01 19 57086037 57086037 C T ZNF470 Missense_Mutation p.S73F 0.23 deleterious(0) possibly_damaging(0.48) TCGA-DA-A960-01 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.48 tolerated(0.05) benign(0.007) TCGA-DA-A960-01 19 57176166 57176166 C T ZNF835 Missense_Mutation p.G134E 0.20 deleterious(0.01) probably_damaging(1) TCGA-DA-A960-01 19 5763275 5763275 G A CATSPERD Missense_Mutation p.E493K 0.44 tolerated(0.1) benign(0.117) TCGA-DA-A960-01 19 58421229 58421229 C T ZNF417 Silent p.Q139Q 0.21 TCGA-DA-A960-01 19 6681993 6681993 C T C3 Missense_Mutation p.A1437T 0.23 tolerated(0.23) benign(0.007) TCGA-DA-A960-01 19 6760833 6760833 G A SH2D3A Nonsense_Mutation p.Q79* 0.20 TCGA-DA-A960-01 19 7682811 7682811 G A CAMSAP3 Silent p.S1233S 0.29 TCGA-DA-A960-01 19 9064856 9064856 C T MUC16 Silent p.R7530R 0.44 TCGA-DA-A960-01 19 9065615 9065615 C T MUC16 Silent p.E7277E 0.42 TCGA-DA-A960-01 19 9072263 9072263 C T MUC16 Silent p.E5061E 0.23 TCGA-DA-A960-01 19 9076162 9076162 C T MUC16 Missense_Mutation p.E3762K 0.45 unknown(0) TCGA-DA-A960-01 19 9083632 9083632 G A MUC16 Missense_Mutation p.S2728F 0.47 unknown(0) TCGA-DA-A960-01 19 9083885 9083885 G A MUC16 Missense_Mutation p.L2644F 0.35 unknown(0) TCGA-DA-A960-01 19 9089975 9089975 C T MUC16 Missense_Mutation p.G614S 0.17 unknown(0) TCGA-DA-A960-01 19 9091709 9091709 C T MUC16 Missense_Mutation p.G36R 0.50 unknown(0) TCGA-DA-A960-01 19 9225534 9225534 C T OR7G1 Silent p.R302R 0.40 TCGA-DA-A960-01 19 9297135 9297135 G A OR7D2 Silent p.R226R 0.46 TCGA-DA-A960-01 19 9297268 9297268 A T OR7D2 Missense_Mutation p.I271F 0.43 deleterious_low_confidence(0.04) benign(0.005) TCGA-DA-A960-01 19 9578029 9578029 G A ZNF560 Missense_Mutation p.R532C 0.44 tolerated(0.06) benign(0) TCGA-DA-A960-01 19 9579860 9579860 C T ZNF560 Nonsense_Mutation p.W178* 0.38 TCGA-DA-A960-01 1 101196861 101196861 A T VCAM1 Missense_Mutation p.I438F 0.21 deleterious(0.01) probably_damaging(0.91) TCGA-DA-A960-01 1 101196863 101196863 T A VCAM1 Silent p.I438I 0.21 TCGA-DA-A960-01 1 109191532 109191532 C G HENMT1 Missense_Mutation p.E280Q 0.08 tolerated(0.65) benign(0.027) TCGA-DA-A960-01 1 110031659 110031659 C T ATXN7L2 Missense_Mutation p.A325V 0.67 tolerated(0.21) benign(0.003) TCGA-DA-A960-01 1 110738230 110738230 C T SLC6A17 Silent p.F505F 0.27 TCGA-DA-A960-01 1 11106635 11106635 G A MASP2 Silent p.F130F 0.68 TCGA-DA-A960-01 1 111146643 111146643 G A KCNA2 Silent p.I254I 0.10 TCGA-DA-A960-01 1 114372637 114372637 G A PTPN22 Missense_Mutation p.R690C 0.16 tolerated(0.07) probably_damaging(0.944) TCGA-DA-A960-01 1 115166206 115166206 G A DENND2C Missense_Mutation p.R289C 0.40 deleterious(0.01) possibly_damaging(0.453) TCGA-DA-A960-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.66 deleterious(0) benign(0.109) TCGA-DA-A960-01 1 11561770 11561770 G A PTCHD2 Missense_Mutation p.A241T 0.21 tolerated(0.62) benign(0.001) TCGA-DA-A960-01 1 118539018 118539018 G A SPAG17 Silent p.L1676L 0.21 TCGA-DA-A960-01 1 12252938 12252938 C T TNFRSF1B Silent p.I190I 0.24 TCGA-DA-A960-01 1 12253112 12253112 C T TNFRSF1B Silent p.S248S 0.16 TCGA-DA-A960-01 1 12779524 12779524 C T AADACL3 Silent p.F15F 0.61 TCGA-DA-A960-01 1 12835865 12835865 G A PRAMEF12 Missense_Mutation p.G156E 0.16 tolerated(0.46) benign(0.04) TCGA-DA-A960-01 1 13942411 13942411 C T PDPN 3'UTR 0.44 TCGA-DA-A960-01 1 150445763 150445763 C T RPRD2 Missense_Mutation p.P1447S 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-DA-A960-01 1 151774697 151774697 C T LINGO4 Missense_Mutation p.E162K 0.19 deleterious(0.02) probably_damaging(0.989) TCGA-DA-A960-01 1 152187528 152187528 C T HRNR Missense_Mutation p.G2193R 0.10 unknown(0) TCGA-DA-A960-01 1 154931840 154931840 G A PYGO2 Silent p.S212S 0.12 TCGA-DA-A960-01 1 155034388 155034388 G A ADAM15 Silent p.L787L 0.17 TCGA-DA-A960-01 1 155165817 155165817 C T THBS3 Missense_Mutation p.E925K 0.18 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 1 157514194 157514194 G A FCRL5 Silent p.T234T 0.24 TCGA-DA-A960-01 1 157556184 157556184 C T FCRL4 Silent p.G303G 0.17 TCGA-DA-A960-01 1 158225013 158225013 C T CD1A Silent p.F66F 0.68 TCGA-DA-A960-01 1 158225942 158225942 C T CD1A Silent p.A158A 0.11 TCGA-DA-A960-01 1 158326440 158326440 C T CD1E Intron 0.23 TCGA-DA-A960-01 1 158687706 158687706 G A OR6K3 Missense_Mutation p.S67F 0.11 deleterious(0) probably_damaging(0.98) TCGA-DA-A960-01 1 15874796 15874796 C T DNAJC16 Missense_Mutation p.S299L 0.11 tolerated(0.19) benign(0.002) TCGA-DA-A960-01 1 159785217 159785217 G A FCRL6 Splice_Site p.X383_splice 0.39 TCGA-DA-A960-01 1 159923262 159923262 C T SLAMF9 Missense_Mutation p.M76I 0.67 tolerated(0.44) benign(0.013) TCGA-DA-A960-01 1 160793509 160793509 C T LY9 Missense_Mutation p.P585S 0.61 tolerated(0.07) benign(0) TCGA-DA-A960-01 1 161518374 161518374 G A FCGR3A Silent p.S88S 0.09 TCGA-DA-A960-01 1 161599731 161599731 G A FCGR3B Silent p.S88S 0.32 TCGA-DA-A960-01 1 16477432 16477432 C A EPHA2 Nonsense_Mutation p.G38* 0.64 TCGA-DA-A960-01 1 16778415 16778415 C T NECAP2 Missense_Mutation p.P191L 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-DA-A960-01 1 172628319 172628319 G A FASLG 5'UTR 0.26 TCGA-DA-A960-01 1 176526053 176526053 C T PAPPA2 Missense_Mutation p.R199C 0.46 deleterious(0) probably_damaging(0.915) TCGA-DA-A960-01 1 176934312 176934312 C T ASTN1 Missense_Mutation p.D529N 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A960-01 1 176983965 176983965 C T ASTN1 Silent p.K495K 0.58 TCGA-DA-A960-01 1 179564915 179564915 G A TDRD5 Missense_Mutation p.E265K 0.25 tolerated(0.05) benign(0.02) TCGA-DA-A960-01 1 181686353 181686353 G A CACNA1E Nonsense_Mutation p.W480* 0.55 TCGA-DA-A960-01 1 183093806 183093806 C T LAMC1 Silent p.D814D 0.65 TCGA-DA-A960-01 1 183093807 183093807 C T LAMC1 Missense_Mutation p.P815S 0.63 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 1 183184603 183184603 G A LAMC2 Missense_Mutation p.R95Q 0.45 tolerated(1) benign(0.001) TCGA-DA-A960-01 1 183514226 183514226 C T SMG7 Missense_Mutation p.P671S 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DA-A960-01 1 1849257 1849257 G A TMEM52 3'UTR 0.09 TCGA-DA-A960-01 1 19180950 19180950 G A TAS1R2 Silent p.F338F 0.23 TCGA-DA-A960-01 1 193121573 193121573 C T CDC73 Missense_Mutation p.T324M 0.23 tolerated(0.12) benign(0.378) TCGA-DA-A960-01 1 19446132 19446132 G A UBR4 Silent p.L3458L 0.51 TCGA-DA-A960-01 1 196395070 196395070 G A KCNT2 Nonsense_Mutation p.R345* 0.68 TCGA-DA-A960-01 1 196706656 196706656 C T CFH Missense_Mutation p.S883L 0.37 tolerated(0.31) benign(0.038) TCGA-DA-A960-01 1 197326048 197326048 C T CRB1 Missense_Mutation p.S359L 0.63 tolerated(0.49) benign(0.033) TCGA-DA-A960-01 1 197889204 197889204 C T LHX9 Silent p.L93L 0.09 TCGA-DA-A960-01 1 198717244 198717244 C T PTPRC Missense_Mutation p.P952S 0.11 deleterious(0) probably_damaging(0.997) TCGA-DA-A960-01 1 201061185 201061185 C T CACNA1S Missense_Mutation p.M152I 0.30 tolerated_low_confidence(0.43) benign(0.004) TCGA-DA-A960-01 1 201965499 201965499 C T RNPEP Intron 0.35 TCGA-DA-A960-01 1 203689862 203689862 C T ATP2B4 Silent p.I864I 0.70 TCGA-DA-A960-01 1 20440555 20440555 G T PLA2G2D 3'UTR 0.24 TCGA-DA-A960-01 1 205053434 205053434 G A TMEM81 Silent p.A5A 0.28 TCGA-DA-A960-01 1 205116687 205116687 C T DSTYK Silent p.%3D 0.44 TCGA-DA-A960-01 1 205884363 205884363 G A SLC26A9 Intron 0.22 TCGA-DA-A960-01 1 206230939 206230939 G A AVPR1B Missense_Mutation p.G358S 0.55 tolerated(0.73) benign(0.007) TCGA-DA-A960-01 1 213147353 213147353 C T VASH2 Silent p.S268S 0.48 TCGA-DA-A960-01 1 215259886 215259886 C T KCNK2 Silent p.I74I 0.36 TCGA-DA-A960-01 1 223568115 223568115 G A C1orf65 Missense_Mutation p.R433Q 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-DA-A960-01 1 225609930 225609930 G A LBR Missense_Mutation p.P72L 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-DA-A960-01 1 227071479 227071481 CGC TG PSEN2 Frame_Shift_Del p.P72Lfs*8 0.48 TCGA-DA-A960-01 1 22838349 22838349 C T ZBTB40 Missense_Mutation p.S728F 0.55 deleterious(0.02) benign(0.184) TCGA-DA-A960-01 1 228399583 228399583 C T OBSCN Silent p.I33I 0.56 TCGA-DA-A960-01 1 228509828 228509828 C T OBSCN Missense_Mutation p.R6053W 0.75 possibly_damaging(0.886) TCGA-DA-A960-01 1 229794933 229794933 C T URB2 Silent p.F1488F 0.53 TCGA-DA-A960-01 1 234454675 234454675 C T SLC35F3 Missense_Mutation p.S378L 0.48 deleterious(0) possibly_damaging(0.487) TCGA-DA-A960-01 1 234527457 234527457 G A TARBP1 Nonsense_Mutation p.Q1578* 0.36 TCGA-DA-A960-01 1 23520038 23520038 C T HTR1D Silent p.R225R 0.35 TCGA-DA-A960-01 1 237947904 237947904 G A RYR2 Missense_Mutation p.V4298M 0.29 benign(0.183) TCGA-DA-A960-01 1 247492847 247492847 G A ZNF496 Missense_Mutation p.P12S 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DA-A960-01 1 248004770 248004770 C T OR11L1 Silent p.R143R 0.22 TCGA-DA-A960-01 1 248263174 248263174 C T OR2L13 Missense_Mutation p.P166L 0.58 deleterious(0) probably_damaging(0.929) TCGA-DA-A960-01 1 248436220 248436220 C T OR2T33 Silent p.L299L 0.26 TCGA-DA-A960-01 1 248436488 248436488 G A OR2T33 Missense_Mutation p.S210F 0.46 deleterious(0.03) benign(0.232) TCGA-DA-A960-01 1 248637371 248637371 G A OR2T3 Silent p.R240R 0.31 TCGA-DA-A960-01 1 248737727 248737727 G A OR2T34 Missense_Mutation p.T111I 0.63 deleterious(0.01) benign(0.36) TCGA-DA-A960-01 1 2938889 2938889 G A ACTRT2 Silent p.V213V 0.23 TCGA-DA-A960-01 1 2938890 2938890 G A ACTRT2 Missense_Mutation p.D214N 0.23 tolerated(0.16) benign(0.02) TCGA-DA-A960-01 1 3301793 3301793 C T PRDM16 Silent p.I172I 0.27 TCGA-DA-A960-01 1 34204921 34204921 C T CSMD2 Missense_Mutation p.E690K 0.27 deleterious(0) probably_damaging(0.988) TCGA-DA-A960-01 1 35227063 35227063 C T GJB4 Missense_Mutation p.P70S 0.38 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 1 38034852 38034852 G A GNL2 Missense_Mutation p.P490S 0.20 tolerated(0.43) benign(0.001) TCGA-DA-A960-01 1 38167439 38167439 C T CDCA8 Missense_Mutation p.P146L 0.60 deleterious(0.02) benign(0.027) TCGA-DA-A960-01 1 40028021 40028021 G A PABPC4 Missense_Mutation p.P579L 0.64 tolerated(0.15) benign(0.224) TCGA-DA-A960-01 1 40424465 40424465 C T MFSD2A Silent p.S120S 0.56 TCGA-DA-A960-01 1 40424466 40424466 C T MFSD2A Missense_Mutation p.P121S 0.56 tolerated(0.24) benign(0.006) TCGA-DA-A960-01 1 41298712 41298712 G A KCNQ4 Missense_Mutation p.E514K 0.37 deleterious(0.05) possibly_damaging(0.808) TCGA-DA-A960-01 1 43778112 43778112 G A TIE1 Silent p.R589R 0.29 TCGA-DA-A960-01 1 43868911 43868911 C T SZT2 Missense_Mutation p.R31C 0.70 deleterious(0) probably_damaging(0.992) TCGA-DA-A960-01 1 43907990 43907990 G A SZT2 Missense_Mutation p.R2585Q 0.49 tolerated(0.37) possibly_damaging(0.902) TCGA-DA-A960-01 1 44064544 44064544 G A PTPRF Missense_Mutation p.G758E 0.49 deleterious(0.02) possibly_damaging(0.903) TCGA-DA-A960-01 1 45079884 45079884 C T RNF220 Missense_Mutation p.P225S 0.14 deleterious(0) probably_damaging(0.996) TCGA-DA-A960-01 1 47078691 47078691 C T MOB3C Silent p.Q153Q 0.56 TCGA-DA-A960-01 1 47365968 47365968 G A CYP4Z2P RNA 0.26 TCGA-DA-A960-01 1 47726118 47726118 G A STIL Nonsense_Mutation p.Q975* 0.62 TCGA-DA-A960-01 1 4834498 4834498 C T AJAP1 Missense_Mutation p.S392F 0.16 deleterious(0) possibly_damaging(0.449) TCGA-DA-A960-01 1 53267783 53267783 C T ZYG11B Missense_Mutation p.S556F 0.61 deleterious(0.01) benign(0.366) TCGA-DA-A960-01 1 53370736 53370736 C T ECHDC2 Missense_Mutation p.E162K 0.18 deleterious(0) benign(0.35) TCGA-DA-A960-01 1 57169750 57169750 A C PRKAA2 Missense_Mutation p.K299Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A960-01 1 57409378 57409378 C T C8B Missense_Mutation p.E409K 0.22 deleterious(0) probably_damaging(0.99) TCGA-DA-A960-01 1 60228302 60228302 T A FGGY 3'UTR 0.31 TCGA-DA-A960-01 1 65113686 65113686 C T CACHD1 Silent p.F402F 0.61 TCGA-DA-A960-01 1 65851449 65851449 C T DNAJC6 Silent p.F285F 0.63 TCGA-DA-A960-01 1 66075953 66075953 G A LEPR Missense_Mutation p.E657K 0.26 deleterious(0.02) benign(0.313) TCGA-DA-A960-01 1 70488833 70488833 G A LRRC7 Missense_Mutation p.E486K 0.19 tolerated(0.2) benign(0.006) TCGA-DA-A960-01 1 75038157 75038157 C T C1orf173 Silent p.E1079E 0.62 TCGA-DA-A960-01 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.26 TCGA-DA-A960-01 1 78099080 78099080 C A ZZZ3 5'UTR 0.42 TCGA-DA-A960-01 1 78187851 78187851 G A USP33 Silent p.L505L 0.40 TCGA-DA-A960-01 1 7889967 7889967 C T PER3 Missense_Mutation p.P978L 0.61 tolerated_low_confidence(0.37) probably_damaging(0.981) TCGA-DA-A960-01 1 89473478 89473478 C T GBP3 Missense_Mutation p.E573K 0.26 deleterious(0.02) benign(0.281) TCGA-DA-A960-01 1 89835134 89835134 G A GBP6 Missense_Mutation p.E74K 0.49 tolerated(0.25) benign(0.06) TCGA-DA-A960-01 1 90180126 90180126 C A LRRC8C Missense_Mutation p.S666Y 0.23 tolerated(1) benign(0.001) TCGA-DA-A960-01 1 90180127 90180127 C A LRRC8C Silent p.S666S 0.23 TCGA-DA-A960-01 1 92479866 92479866 G A BRDT 3'UTR 0.49 TCGA-DA-A960-01 1 93073260 93073260 G A EVI5 Nonsense_Mutation p.R602* 0.57 TCGA-DA-A960-01 1 93744041 93744041 G A CCDC18 3'UTR 0.19 TCGA-DA-A960-01 1 94528279 94528279 G A ABCA4 Silent p.P597P 0.24 TCGA-DA-A960-01 20 18022189 18022189 C A OVOL2 Missense_Mutation p.R167L 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 20 209956 209956 G A DEFB129 Silent p.G32G 0.20 TCGA-DA-A960-01 20 21687678 21687678 G A PAX1 Missense_Mutation p.G297S 0.16 deleterious(0) possibly_damaging(0.878) TCGA-DA-A960-01 20 21687679 21687679 G A PAX1 Missense_Mutation p.G297D 0.15 deleterious(0) probably_damaging(0.993) TCGA-DA-A960-01 20 23425459 23425459 C T CSTL1 Nonsense_Mutation p.Q128* 0.39 TCGA-DA-A960-01 20 29896334 29896334 G A DEFB116 Nonsense_Mutation p.Q19* 0.17 TCGA-DA-A960-01 20 30414588 30414588 C T MYLK2 Intron 0.56 TCGA-DA-A960-01 20 30672286 30672286 C T HCK Missense_Mutation p.R259W 0.26 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 20 3211864 3211864 G A SLC4A11 Missense_Mutation p.P368S 0.42 tolerated(0.4) benign(0.02) TCGA-DA-A960-01 20 3214206 3214206 G A SLC4A11 Missense_Mutation p.S271F 0.47 deleterious(0.03) probably_damaging(0.953) TCGA-DA-A960-01 20 33735139 33735139 C T EDEM2 5'UTR 0.47 TCGA-DA-A960-01 20 33875305 33875305 G A FAM83C Missense_Mutation p.S426F 0.40 deleterious_low_confidence(0.02) benign(0.059) TCGA-DA-A960-01 20 33879976 33879976 C T FAM83C Silent p.A44A 0.63 TCGA-DA-A960-01 20 34242264 34242264 G A RBM12 Silent p.L327L 0.43 TCGA-DA-A960-01 20 35262955 35262955 G A SLA2 Silent p.F43F 0.31 TCGA-DA-A960-01 20 3675115 3675115 G A SIGLEC1 Silent p.L1003L 0.55 TCGA-DA-A960-01 20 3679909 3679909 G A SIGLEC1 Missense_Mutation p.R576W 0.62 deleterious(0.04) benign(0.082) TCGA-DA-A960-01 20 3679910 3679910 G A SIGLEC1 Silent p.C575C 0.62 TCGA-DA-A960-01 20 3684550 3684550 C T SIGLEC1 Missense_Mutation p.D299N 0.12 deleterious(0.02) benign(0.365) TCGA-DA-A960-01 20 36937433 36937433 G A BPI Missense_Mutation p.G120E 0.25 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 20 41400164 41400164 G A PTPRT Nonsense_Mutation p.Q199* 0.19 TCGA-DA-A960-01 20 42788523 42788523 C T JPH2 Missense_Mutation p.G302S 0.17 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 20 42788524 42788524 C T JPH2 Silent p.S301S 0.26 TCGA-DA-A960-01 20 43128933 43128933 A C SERINC3 3'UTR 0.23 TCGA-DA-A960-01 20 43247052 43247052 C T PKIG 3'UTR 0.27 TCGA-DA-A960-01 20 47734521 47734521 A T STAU1 Missense_Mutation p.H434Q 0.80 tolerated(0.25) benign(0.009) TCGA-DA-A960-01 20 47892375 47892376 - T ZNFX1 Frame_Shift_Ins p.M1? 0.21 TCGA-DA-A960-01 20 48098949 48098949 G A KCNB1 Silent p.I23I 0.88 TCGA-DA-A960-01 20 48129658 48129658 G A PTGIS Silent p.L389L 0.22 TCGA-DA-A960-01 20 4913309 4913309 G A SLC23A2 5'UTR 0.19 TCGA-DA-A960-01 20 49626525 49626525 G A KCNG1 Silent p.F117F 0.16 TCGA-DA-A960-01 20 51871282 51871282 A T TSHZ2 Missense_Mutation p.M429L 0.23 deleterious(0.04) possibly_damaging(0.904) TCGA-DA-A960-01 20 5538711 5538711 G A GPCPD1 Missense_Mutation p.S570F 0.21 deleterious(0) benign(0.416) TCGA-DA-A960-01 20 57484633 57484633 C T GNAS Silent p.N882N 0.05 TCGA-DA-A960-01 20 57769423 57769423 G T ZNF831 Missense_Mutation p.G1117W 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-DA-A960-01 20 57828170 57828170 G A ZNF831 Missense_Mutation p.E1389K 0.28 tolerated(0.09) benign(0.307) TCGA-DA-A960-01 20 58318299 58318299 G A PHACTR3 Missense_Mutation p.E86K 0.21 deleterious(0) probably_damaging(0.994) TCGA-DA-A960-01 20 5903273 5903273 G A CHGB Silent p.Q161Q 0.21 TCGA-DA-A960-01 20 5903280 5903280 G A CHGB Missense_Mutation p.D164N 0.54 tolerated(0.22) benign(0.009) TCGA-DA-A960-01 20 60738592 60738592 C T SS18L1 Missense_Mutation p.S212L 0.35 deleterious_low_confidence(0.04) benign(0.121) TCGA-DA-A960-01 20 60965901 60965901 G A CABLES2 3'UTR 0.29 TCGA-DA-A960-01 20 6096600 6096600 C T FERMT1 Silent p.G81G 0.39 TCGA-DA-A960-01 20 60968517 60968517 C T CABLES2 Missense_Mutation p.A287T 0.27 tolerated(0.82) benign(0.001) TCGA-DA-A960-01 20 62630993 62630993 C T PRPF6 Missense_Mutation p.R302W 0.23 deleterious(0.01) benign(0.077) TCGA-DA-A960-01 20 9561010 9561010 C T PAK7 Missense_Mutation p.G258R 0.21 tolerated_low_confidence(0.19) benign(0.003) TCGA-DA-A960-01 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.17 tolerated(0.06) benign(0.063) TCGA-DA-A960-01 21 10952928 10952928 G A TPTE Missense_Mutation p.S90L 0.16 tolerated(0.16) possibly_damaging(0.851) TCGA-DA-A960-01 21 10973727 10973727 C T TPTE Missense_Mutation p.E3K 0.17 tolerated_low_confidence(0.2) benign(0) TCGA-DA-A960-01 21 15889347 15889347 G A SAMSN1 Missense_Mutation p.P117S 0.46 tolerated(0.28) benign(0.004) TCGA-DA-A960-01 21 19638462 19638462 G A CHODL 3'UTR 0.58 TCGA-DA-A960-01 21 32624222 32624222 G A TIAM1 Missense_Mutation p.T416I 0.48 deleterious(0.02) possibly_damaging(0.54) TCGA-DA-A960-01 21 36421233 36421233 G A RUNX1 5'UTR 0.36 TCGA-DA-A960-01 21 37758421 37758421 C T CHAF1B 5'UTR 0.22 TCGA-DA-A960-01 21 37785214 37785214 C A CHAF1B Missense_Mutation p.S365Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-DA-A960-01 21 39671864 39671864 G A KCNJ15 Silent p.R227R 0.41 TCGA-DA-A960-01 21 41684112 41684112 G A DSCAM Missense_Mutation p.S653F 0.19 deleterious(0) probably_damaging(0.979) TCGA-DA-A960-01 21 41741060 41741060 C T DSCAM Silent p.T207T 0.21 TCGA-DA-A960-01 21 43524112 43524112 G A UMODL1 Missense_Mutation p.M478I 0.43 tolerated(0.06) benign(0.001) TCGA-DA-A960-01 21 45838424 45838424 G A TRPM2 Silent p.E1149E 0.19 TCGA-DA-A960-01 21 45978527 45978527 C T KRTAP10-3 Silent p.E24E 0.19 TCGA-DA-A960-01 21 46057953 46057953 C T KRTAP10-10 Missense_Mutation p.P207S 0.48 tolerated(1) benign(0.07) TCGA-DA-A960-01 22 18022036 18022036 C T CECR2 Missense_Mutation p.P714L 0.14 deleterious(0) possibly_damaging(0.474) TCGA-DA-A960-01 22 24579593 24579593 C T SUSD2 Missense_Mutation p.R140C 0.27 deleterious(0.02) benign(0.194) TCGA-DA-A960-01 22 25016353 25016353 G A GGT1 Silent p.R147R 0.15 TCGA-DA-A960-01 22 26228956 26228956 C T MYO18B Missense_Mutation p.P1018S 0.48 tolerated(0.67) possibly_damaging(0.495) TCGA-DA-A960-01 22 26736421 26736421 G A SEZ6L Missense_Mutation p.D679N 0.44 deleterious(0) probably_damaging(0.938) TCGA-DA-A960-01 22 29628258 29628258 C T EMID1 Silent p.P230P 0.23 TCGA-DA-A960-01 22 32480607 32480607 G A SLC5A1 Silent p.G282G 0.49 TCGA-DA-A960-01 22 32589107 32589107 G A RFPL2 Missense_Mutation p.S113F 0.45 tolerated(0.59) possibly_damaging(0.676) TCGA-DA-A960-01 22 32795611 32795611 C T RTCB Silent p.A211A 0.23 TCGA-DA-A960-01 22 35812693 35812693 C T MCM5 Silent p.F492F 0.45 TCGA-DA-A960-01 22 36013228 36013228 C T MB Missense_Mutation p.G26E 0.49 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 22 36586002 36586002 C T APOL4 3'Flank 0.54 TCGA-DA-A960-01 22 36597784 36597784 C T APOL4 Intron 0.20 TCGA-DA-A960-01 22 37524697 37524697 G A IL2RB Silent p.F365F 0.41 TCGA-DA-A960-01 22 37578279 37578279 G A C1QTNF6 Silent p.F262F 0.43 TCGA-DA-A960-01 22 44073963 44073963 G A EFCAB6 Silent p.F444F 0.51 TCGA-DA-A960-01 22 50488668 50488668 C T TTLL8 Silent p.K56K 0.33 TCGA-DA-A960-01 22 50596530 50596530 G A MOV10L1 Silent p.P1037P 0.44 TCGA-DA-A960-01 22 50596531 50596531 G A MOV10L1 Missense_Mutation p.A1038T 0.43 tolerated(0.52) benign(0.019) TCGA-DA-A960-01 22 50956404 50956404 G A NCAPH2 Silent p.E141E 0.44 TCGA-DA-A960-01 2 10105479 10105479 C T GRHL1 Missense_Mutation p.S360F 0.54 deleterious(0) possibly_damaging(0.701) TCGA-DA-A960-01 2 103006655 103006655 G A IL18R1 Silent p.T363T 0.35 TCGA-DA-A960-01 2 103148909 103148909 G A SLC9A4 Missense_Mutation p.R720K 0.21 tolerated(0.88) benign(0.005) TCGA-DA-A960-01 2 107021669 107021669 A C RGPD3 3'UTR 0.34 TCGA-DA-A960-01 2 107040937 107040937 C T RGPD3 Silent p.Q1162Q 0.34 TCGA-DA-A960-01 2 107450552 107450552 C T ST6GAL2 Missense_Mutation p.E332K 0.38 probably_damaging(0.997) TCGA-DA-A960-01 2 108999960 108999960 G A SULT1C4 Missense_Mutation p.M203I 0.51 tolerated(0.26) benign(0.047) TCGA-DA-A960-01 2 113875601 113875601 T G IL1RN Silent p.A2A 0.53 TCGA-DA-A960-01 2 113875602 113875602 T C IL1RN Silent p.L3L 0.53 TCGA-DA-A960-01 2 113940881 113940881 G A PSD4 Missense_Mutation p.S283N 0.50 deleterious_low_confidence(0.05) benign(0.215) TCGA-DA-A960-01 2 116572425 116572425 C T DPP10 Missense_Mutation p.S590F 0.17 deleterious(0) probably_damaging(0.929) TCGA-DA-A960-01 2 122485894 122485894 A G NIFK Silent p.L221L 0.44 TCGA-DA-A960-01 2 125262070 125262070 G A CNTNAP5 Missense_Mutation p.E421K 0.47 tolerated(0.26) benign(0.213) TCGA-DA-A960-01 2 125284914 125284914 C T CNTNAP5 Silent p.F509F 0.29 TCGA-DA-A960-01 2 133489350 133489350 C T NCKAP5 Missense_Mutation p.M1801I 0.44 tolerated(0.81) benign(0) TCGA-DA-A960-01 2 136668756 136668756 A T DARS Missense_Mutation p.I456N 0.50 deleterious(0) probably_damaging(0.977) TCGA-DA-A960-01 2 141116451 141116451 C T LRP1B Silent p.S3732S 0.23 TCGA-DA-A960-01 2 144764878 144764878 G A GTDC1 Missense_Mutation p.S249F 0.18 tolerated_low_confidence(0.27) benign(0.002) TCGA-DA-A960-01 2 155102455 155102455 G A GALNT13 Missense_Mutation p.E273K 0.38 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 2 15768938 15768938 C T DDX1 Missense_Mutation p.S617F 0.21 deleterious(0) probably_damaging(0.97) TCGA-DA-A960-01 2 165972031 165972031 G C SCN3A Missense_Mutation p.R1150G 0.46 tolerated(0.48) benign(0) TCGA-DA-A960-01 2 167262059 167262059 G A SCN7A 3'UTR 0.42 TCGA-DA-A960-01 2 170417138 170417138 G A FASTKD1 Missense_Mutation p.R244C 0.46 tolerated(0.1) benign(0.001) TCGA-DA-A960-01 2 170502609 170502609 C T CCDC173 Silent p.K467K 0.20 TCGA-DA-A960-01 2 178969199 178969199 T C AC011998.4 5'Flank 0.40 TCGA-DA-A960-01 2 179396557 179396557 C T TTN Missense_Mutation p.E34929K 0.28 TCGA-DA-A960-01 2 179437961 179437961 C T TTN Missense_Mutation p.E24300K 0.49 TCGA-DA-A960-01 2 179438345 179438345 T A TTN Missense_Mutation p.N24172Y 0.21 TCGA-DA-A960-01 2 179476662 179476662 C T TTN Missense_Mutation p.E16792K 0.40 TCGA-DA-A960-01 2 179542519 179542519 C T TTN Missense_Mutation p.E11374K 0.44 TCGA-DA-A960-01 2 179579164 179579164 T A TTN Missense_Mutation p.E8779D 0.17 TCGA-DA-A960-01 2 179583125 179583125 C T TTN Silent p.E8236E 0.43 TCGA-DA-A960-01 2 179598358 179598358 C T TTN Missense_Mutation p.G5253E 0.18 TCGA-DA-A960-01 2 179605266 179605266 C T TTN Missense_Mutation p.E4232K 0.46 TCGA-DA-A960-01 2 179612236 179612236 G A TTN Intron 0.19 TCGA-DA-A960-01 2 179701562 179701562 G A CCDC141 Intron 0.28 TCGA-DA-A960-01 2 179702198 179702198 C A CCDC141 Missense_Mutation p.G1250W 0.21 deleterious(0.01) possibly_damaging(0.753) TCGA-DA-A960-01 2 182339928 182339928 G A ITGA4 Missense_Mutation p.E157K 0.44 deleterious(0.01) benign(0.424) TCGA-DA-A960-01 2 183094839 183094839 G A PDE1A Missense_Mutation p.A206V 0.22 deleterious(0.01) possibly_damaging(0.686) TCGA-DA-A960-01 2 186671415 186671415 G A FSIP2 Missense_Mutation p.M5883I 0.46 benign(0.206) TCGA-DA-A960-01 2 186673715 186673715 G A FSIP2 Missense_Mutation p.R6650K 0.50 benign(0.002) TCGA-DA-A960-01 2 188223994 188223994 G A CALCRL Missense_Mutation p.P263S 0.53 deleterious(0) probably_damaging(0.996) TCGA-DA-A960-01 2 189933610 189933610 C T COL5A2 Missense_Mutation p.G387R 0.38 probably_damaging(0.999) TCGA-DA-A960-01 2 192821000 192821000 T C TMEFF2 Missense_Mutation p.M284V 0.51 tolerated(0.5) benign(0.001) TCGA-DA-A960-01 2 196746709 196746709 C T DNAH7 Missense_Mutation p.G1924E 0.20 deleterious(0) probably_damaging(0.962) TCGA-DA-A960-01 2 203818840 203818840 C T CARF Silent p.P180P 0.34 TCGA-DA-A960-01 2 206657010 206657010 G A NRP2 Splice_Site p.X831_splice 0.21 TCGA-DA-A960-01 2 21224925 21224925 C T APOB Missense_Mutation p.D4457N 0.44 benign(0.223) TCGA-DA-A960-01 2 213878573 213878573 T C IKZF2 Missense_Mutation p.I266M 0.21 deleterious(0.03) benign(0.011) TCGA-DA-A960-01 2 219000400 219000400 C T CXCR2 Silent p.I292I 0.35 TCGA-DA-A960-01 2 219603035 219603035 C T TTLL4 Silent p.S212S 0.19 TCGA-DA-A960-01 2 219603715 219603715 C T TTLL4 Missense_Mutation p.S439F 0.21 tolerated(0.05) possibly_damaging(0.668) TCGA-DA-A960-01 2 228783552 228783552 C T DAW1 Missense_Mutation p.H344Y 0.50 deleterious(0.01) probably_damaging(0.972) TCGA-DA-A960-01 2 231738132 231738132 G A ITM2C Missense_Mutation p.E41K 0.36 tolerated(0.19) benign(0.065) TCGA-DA-A960-01 2 234652284 234652284 G A UGT1A10 Intron 0.47 TCGA-DA-A960-01 2 238726701 238726701 C T RBM44 Missense_Mutation p.S381F 0.38 tolerated(0.05) benign(0.045) TCGA-DA-A960-01 2 242076539 242076539 G A PASK Silent p.V339V 0.35 TCGA-DA-A960-01 2 27360526 27360526 G A C2orf53 Silent p.I224I 0.44 TCGA-DA-A960-01 2 27447718 27447718 C T CAD Missense_Mutation p.P454S 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 2 27589757 27589757 G A EIF2B4 Missense_Mutation p.R374W 0.19 deleterious(0) possibly_damaging(0.828) TCGA-DA-A960-01 2 28775823 28775823 C T PLB1 Missense_Mutation p.P371L 0.23 tolerated(0.09) benign(0.004) TCGA-DA-A960-01 2 29519886 29519886 C T ALK Missense_Mutation p.G562E 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 2 31168674 31168674 G A GALNT14 Silent p.I244I 0.27 TCGA-DA-A960-01 2 33002971 33002971 G A TTC27 Missense_Mutation p.G568D 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 2 33413754 33413754 G A LTBP1 Missense_Mutation p.E513K 0.23 tolerated(0.4) benign(0.002) TCGA-DA-A960-01 2 3691436 3691436 G A COLEC11 Missense_Mutation p.D196N 0.40 deleterious(0.05) probably_damaging(0.999) TCGA-DA-A960-01 2 37265090 37265090 G A HEATR5B Missense_Mutation p.L1042F 0.52 deleterious(0.01) benign(0.413) TCGA-DA-A960-01 2 42553302 42553302 C T EML4 Missense_Mutation p.P751S 0.42 tolerated(0.12) benign(0.001) TCGA-DA-A960-01 2 44503036 44503036 G A SLC3A1 Missense_Mutation p.G121E 0.43 deleterious(0.03) possibly_damaging(0.641) TCGA-DA-A960-01 2 48822397 48822397 G A STON1 Missense_Mutation p.D722N 0.42 deleterious(0.04) benign(0.441) TCGA-DA-A960-01 2 56144958 56144958 G A EFEMP1 Missense_Mutation p.A120V 0.20 tolerated(0.4) benign(0.002) TCGA-DA-A960-01 2 63280057 63280057 G A OTX1 5'UTR 0.50 TCGA-DA-A960-01 2 69002468 69002468 C T ARHGAP25 Silent p.I59I 0.27 TCGA-DA-A960-01 2 69706125 69706125 C T AAK1 Missense_Mutation p.E880K 0.58 deleterious(0.02) benign(0.046) TCGA-DA-A960-01 2 70454867 70454867 G A TIA1 Missense_Mutation p.S133L 0.64 deleterious(0) benign(0.187) TCGA-DA-A960-01 2 71891488 71891488 C T DYSF Silent p.I1698I 0.19 TCGA-DA-A960-01 2 88828846 88828846 C T TEX37 Missense_Mutation p.P133S 0.49 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-DA-A960-01 2 96964043 96964043 G T SNRNP200 Silent p.T366T 0.40 TCGA-DA-A960-01 2 96964044 96964044 G A SNRNP200 Missense_Mutation p.T366I 0.40 tolerated(0.1) benign(0.088) TCGA-DA-A960-01 2 97365379 97365379 G T FER1L5 RNA 0.46 TCGA-DA-A960-01 3 100287781 100287781 T C TMEM45A Missense_Mutation p.I235T 0.47 deleterious(0.04) benign(0.305) TCGA-DA-A960-01 3 100489614 100489614 C T ABI3BP Missense_Mutation p.E861K 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-DA-A960-01 3 101044840 101044840 G A SENP7 Nonsense_Mutation p.R1034* 0.23 TCGA-DA-A960-01 3 108541760 108541760 C T TRAT1 5'UTR 0.21 TCGA-DA-A960-01 3 10885954 10885954 G A SLC6A11 Missense_Mutation p.E227K 0.27 tolerated(0.06) possibly_damaging(0.559) TCGA-DA-A960-01 3 109027920 109027920 C T DPPA2 Missense_Mutation p.E117K 0.49 tolerated(0.07) benign(0.008) TCGA-DA-A960-01 3 109049587 109049587 C T DPPA4 Missense_Mutation p.E155K 0.42 tolerated(0.22) benign(0.015) TCGA-DA-A960-01 3 112546229 112546229 G A CD200R1L Missense_Mutation p.H139Y 0.29 tolerated(0.08) possibly_damaging(0.883) TCGA-DA-A960-01 3 113955831 113955831 C T ZNF80 Missense_Mutation p.E31K 0.46 tolerated(0.18) benign(0.2) TCGA-DA-A960-01 3 120977919 120977919 C T STXBP5L Missense_Mutation p.P621L 0.19 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 3 121350620 121350620 G A HCLS1 3'UTR 0.42 TCGA-DA-A960-01 3 122003100 122003100 G A CASR Missense_Mutation p.E777K 0.47 deleterious(0.03) probably_damaging(0.977) TCGA-DA-A960-01 3 127703083 127703083 C T KBTBD12 Missense_Mutation p.P612S 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A960-01 3 128077137 128077137 G A EEFSEC Silent p.K507K 0.19 TCGA-DA-A960-01 3 133472445 133472445 G A TF Missense_Mutation p.E75K 0.41 tolerated(0.34) benign(0.107) TCGA-DA-A960-01 3 133653592 133653592 C A SLCO2A1 Nonsense_Mutation p.E633* 0.31 TCGA-DA-A960-01 3 138738633 138738633 G A PRR23B 3'UTR 0.27 TCGA-DA-A960-01 3 141163288 141163288 C T ZBTB38 Silent p.L686L 0.24 TCGA-DA-A960-01 3 148601470 148601470 G A CPA3 Silent p.T283T 0.50 TCGA-DA-A960-01 3 150906154 150906154 C T MED12L Missense_Mutation p.S547L 0.17 deleterious(0.03) benign(0.117) TCGA-DA-A960-01 3 151163386 151163386 G A IGSF10 Silent p.T1461T 0.26 TCGA-DA-A960-01 3 151599346 151599346 G A SUCNR1 3'UTR 0.53 TCGA-DA-A960-01 3 154139275 154139275 G T GPR149 Silent p.I392I 0.41 TCGA-DA-A960-01 3 155571700 155571700 G A SLC33A1 Silent p.P29P 0.52 TCGA-DA-A960-01 3 155611444 155611444 C T GMPS Silent p.F55F 0.44 TCGA-DA-A960-01 3 160968060 160968060 C T NMD3 Missense_Mutation p.L443F 0.40 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 3 164786617 164786617 C T SI Missense_Mutation p.V126I 0.39 tolerated(0.22) benign(0) TCGA-DA-A960-01 3 167196743 167196743 C T WDR49 Missense_Mutation p.E673K 0.47 deleterious(0.05) benign(0.152) TCGA-DA-A960-01 3 168269708 168269708 C T MIR551B RNA 0.12 TCGA-DA-A960-01 3 168834073 168834073 C T MECOM Missense_Mutation p.M406I 0.23 tolerated(0.4) benign(0.009) TCGA-DA-A960-01 3 169548371 169548371 G A LRRIQ4 Missense_Mutation p.R429Q 0.19 tolerated(0.17) benign(0.26) TCGA-DA-A960-01 3 170150469 170150469 G A CLDN11 Silent p.Q183Q 0.39 TCGA-DA-A960-01 3 170216591 170216591 C T SLC7A14 Silent p.K208K 0.45 TCGA-DA-A960-01 3 17084422 17084422 C T PLCL2 Silent p.I899I 0.18 TCGA-DA-A960-01 3 172835337 172835337 C T SPATA16 Missense_Mutation p.R62K 0.22 tolerated(0.11) benign(0.14) TCGA-DA-A960-01 3 182988227 182988227 G A B3GNT5 Missense_Mutation p.G214D 0.19 tolerated(0.07) benign(0.335) TCGA-DA-A960-01 3 183660581 183660581 G A ABCC5 Silent p.L1210L 0.34 TCGA-DA-A960-01 3 184020293 184020293 C T PSMD2 Silent p.D280D 0.26 TCGA-DA-A960-01 3 185986682 185986682 C T DGKG Missense_Mutation p.G342R 0.45 deleterious(0.04) probably_damaging(1) TCGA-DA-A960-01 3 186459981 186459981 C T KNG1 Missense_Mutation p.S599L 0.20 tolerated(0.19) benign(0.03) TCGA-DA-A960-01 3 189582089 189582089 G A TP63 Missense_Mutation p.M216I 0.48 tolerated(0.29) benign(0.024) TCGA-DA-A960-01 3 194081538 194081538 G A LRRC15 Missense_Mutation p.L85F 0.23 deleterious(0.05) possibly_damaging(0.895) TCGA-DA-A960-01 3 25636032 25636032 C T RARB Missense_Mutation p.P338L 0.46 deleterious(0.05) benign(0.026) TCGA-DA-A960-01 3 31871543 31871543 C T OSBPL10 Missense_Mutation p.E240K 0.17 tolerated(0.07) possibly_damaging(0.562) TCGA-DA-A960-01 3 36896775 36896775 C T TRANK1 Missense_Mutation p.D1436N 0.15 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 3 38592799 38592799 G A SCN5A Silent p.I1688I 0.21 TCGA-DA-A960-01 3 38651394 38651394 G A SCN5A Silent p.V255V 0.21 TCGA-DA-A960-01 3 38750969 38750969 C T SCN10A Silent p.K1427K 0.40 TCGA-DA-A960-01 3 39154024 39154024 G A TTC21A Missense_Mutation p.E171K 0.19 deleterious(0.01) possibly_damaging(0.881) TCGA-DA-A960-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.22 deleterious(0) probably_damaging(0.962) TCGA-DA-A960-01 3 43388874 43388874 G A SNRK Missense_Mutation p.D375N 0.25 tolerated(0.08) possibly_damaging(0.529) TCGA-DA-A960-01 3 44882649 44882649 C T KIF15 Silent p.A1168A 0.17 TCGA-DA-A960-01 3 46713451 46713451 C T ALS2CL Silent p.S869S 0.47 TCGA-DA-A960-01 3 46755846 46755846 C T PRSS50 Missense_Mutation p.D206N 0.29 tolerated(0.42) benign(0.096) TCGA-DA-A960-01 3 46963553 46963553 G A CCDC12 Silent p.S178S 0.43 TCGA-DA-A960-01 3 47312848 47312848 G A KIF9 Missense_Mutation p.P157L 0.41 tolerated(0.18) benign(0.248) TCGA-DA-A960-01 3 4732914 4732914 C T ITPR1 Silent p.F1290F 0.31 TCGA-DA-A960-01 3 47555147 47555147 G A ELP6 5'UTR 0.33 TCGA-DA-A960-01 3 49042327 49042327 C T P4HTM Silent p.I307I 0.46 TCGA-DA-A960-01 3 49065708 49065708 G A IMPDH2 Silent p.F99F 0.12 TCGA-DA-A960-01 3 49899578 49899578 C T CAMKV Missense_Mutation p.D43N 0.32 tolerated(0.1) probably_damaging(0.936) TCGA-DA-A960-01 3 5024628 5024628 C T BHLHE40 Missense_Mutation p.R164W 0.42 deleterious(0) probably_damaging(0.948) TCGA-DA-A960-01 3 52257965 52257965 G A TLR9 Missense_Mutation p.P277S 0.55 tolerated(0.27) possibly_damaging(0.598) TCGA-DA-A960-01 3 52556436 52556436 G A STAB1 Missense_Mutation p.G2186S 0.36 tolerated(0.16) benign(0.004) TCGA-DA-A960-01 3 53736708 53736708 G A CACNA1D Missense_Mutation p.D421N 0.48 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 3 53757636 53757636 G A CACNA1D Silent p.G634G 0.23 TCGA-DA-A960-01 3 53845321 53845321 G A CACNA1D Missense_Mutation p.R2145Q 0.37 tolerated_low_confidence(0.59) benign(0.001) TCGA-DA-A960-01 3 55733538 55733538 G T ERC2 Silent p.T905T 0.24 TCGA-DA-A960-01 3 56114917 56114917 C T ERC2 Silent p.L523L 0.27 TCGA-DA-A960-01 3 57143622 57143622 G A IL17RD Missense_Mutation p.P165S 0.28 deleterious(0.01) probably_damaging(1) TCGA-DA-A960-01 3 57647276 57647276 G A DENND6A Silent p.S172S 0.22 TCGA-DA-A960-01 3 64587881 64587881 C T ADAMTS9 Silent p.V1252V 0.30 TCGA-DA-A960-01 3 7188296 7188296 C T GRM7 Missense_Mutation p.S226L 0.40 deleterious(0) possibly_damaging(0.716) TCGA-DA-A960-01 3 74334608 74334608 G A CNTN3 Missense_Mutation p.S851L 0.18 tolerated(0.15) benign(0.015) TCGA-DA-A960-01 3 7456827 7456827 A G GRM7 Missense_Mutation p.E384G 0.37 tolerated(0.65) benign(0.272) TCGA-DA-A960-01 3 85961606 85961606 G A CADM2 Missense_Mutation p.D198N 0.48 deleterious(0) probably_damaging(0.991) TCGA-DA-A960-01 3 9027583 9027583 C T SRGAP3 Missense_Mutation p.E974K 0.28 deleterious(0) benign(0.18) TCGA-DA-A960-01 3 97454926 97454926 C T EPHA6 Missense_Mutation p.P1031L 0.44 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 3 97806787 97806787 G A OR5AC2 Silent p.L257L 0.26 TCGA-DA-A960-01 4 100528115 100528115 G A MTTP Missense_Mutation p.E519K 0.15 tolerated(0.21) benign(0.42) TCGA-DA-A960-01 4 100534105 100534105 C T MTTP Silent p.I675I 0.14 TCGA-DA-A960-01 4 110268672 110268672 G A SEC24B-AS1 RNA 0.43 TCGA-DA-A960-01 4 111397953 111397953 C T ENPEP Missense_Mutation p.P128L 0.46 deleterious(0) benign(0.114) TCGA-DA-A960-01 4 115856374 115856374 G A NDST4 Silent p.I508I 0.24 TCGA-DA-A960-01 4 121957369 121957369 T C NDNF 3'UTR 0.49 TCGA-DA-A960-01 4 121966911 121966911 C T NDNF Missense_Mutation p.E28K 0.48 tolerated_low_confidence(0.1) benign(0.298) TCGA-DA-A960-01 4 122836051 122836051 C T TRPC3 Missense_Mutation p.E409K 0.35 deleterious(0) possibly_damaging(0.855) TCGA-DA-A960-01 4 125592223 125592223 G C ANKRD50 Missense_Mutation p.R737G 0.24 deleterious(0.01) possibly_damaging(0.704) TCGA-DA-A960-01 4 126411926 126411926 C T FAT4 Missense_Mutation p.S4650L 0.11 probably_damaging(0.985) TCGA-DA-A960-01 4 138442599 138442599 C T PCDH18 Missense_Mutation p.D998N 0.41 tolerated(0.49) benign(0.265) TCGA-DA-A960-01 4 145635493 145635493 C T HHIP Missense_Mutation p.R514C 0.36 deleterious(0.01) benign(0.402) TCGA-DA-A960-01 4 146806978 146806978 G A ZNF827 Silent p.P533P 0.52 TCGA-DA-A960-01 4 147796034 147796034 C T TTC29 Silent p.L211L 0.50 TCGA-DA-A960-01 4 148453732 148453732 C T EDNRA Missense_Mutation p.S208F 0.49 tolerated(0.22) possibly_damaging(0.839) TCGA-DA-A960-01 4 154523312 154523312 G A KIAA0922 Missense_Mutation p.D759N 0.45 tolerated(0.1) possibly_damaging(0.828) TCGA-DA-A960-01 4 154533496 154533496 C T KIAA0922 Missense_Mutation p.H1171Y 0.46 deleterious(0.03) possibly_damaging(0.685) TCGA-DA-A960-01 4 156274390 156274390 C T MAP9 Missense_Mutation p.E495K 0.19 deleterious(0.02) possibly_damaging(0.628) TCGA-DA-A960-01 4 164435256 164435256 T A TMA16 Missense_Mutation p.L62H 0.47 deleterious(0) probably_damaging(0.997) TCGA-DA-A960-01 4 165961437 165961437 C T TRIM60 Silent p.L71L 0.50 TCGA-DA-A960-01 4 166416720 166416720 G A CPE Missense_Mutation p.G408D 0.19 deleterious(0) probably_damaging(0.995) TCGA-DA-A960-01 4 175710033 175710033 C T GLRA3 Missense_Mutation p.D45N 0.25 tolerated(0.2) probably_damaging(0.936) TCGA-DA-A960-01 4 183721474 183721474 C T TENM3 Silent p.F2690F 0.20 TCGA-DA-A960-01 4 3318904 3318904 C T RGS12 Missense_Mutation p.S336F 0.52 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 4 3495138 3495138 G A DOK7 Nonsense_Mutation p.W475* 0.41 TCGA-DA-A960-01 4 36148920 36148920 C T ARAP2 Silent p.G1087G 0.20 TCGA-DA-A960-01 4 38117366 38117366 C A TBC1D1 Missense_Mutation p.Q865K 0.07 deleterious(0) possibly_damaging(0.577) TCGA-DA-A960-01 4 41615598 41615598 C T LIMCH1 Missense_Mutation p.S201F 0.31 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 4 41984484 41984484 T G DCAF4L1 Missense_Mutation p.S225R 0.20 deleterious(0) possibly_damaging(0.781) TCGA-DA-A960-01 4 4322648 4322648 C T ZBTB49 Missense_Mutation p.H635Y 0.11 deleterious(0.04) benign(0.153) TCGA-DA-A960-01 4 44691954 44691954 C T GUF1 Missense_Mutation p.P433S 0.41 tolerated(0.45) probably_damaging(0.999) TCGA-DA-A960-01 4 47695081 47695081 C G CORIN Missense_Mutation p.E273D 0.49 tolerated(0.79) benign(0.026) TCGA-DA-A960-01 4 48993964 48993964 T C CWH43 Missense_Mutation p.I123T 0.43 deleterious(0.01) benign(0.197) TCGA-DA-A960-01 4 515770 515770 C T PIGG Intron 0.42 TCGA-DA-A960-01 4 55961075 55961075 G A KDR Silent p.I955I 0.44 TCGA-DA-A960-01 4 56738093 56738093 C T EXOC1 Missense_Mutation p.A348V 0.48 deleterious(0.02) benign(0.016) TCGA-DA-A960-01 4 6107220 6107220 C T JAKMIP1 Missense_Mutation p.E202K 0.53 deleterious(0) probably_damaging(0.997) TCGA-DA-A960-01 4 62758448 62758448 C G LPHN3 Missense_Mutation p.P451A 0.34 tolerated(0.11) benign(0) TCGA-DA-A960-01 4 6873382 6873382 C T KIAA0232 Missense_Mutation p.P1295S 0.20 deleterious_low_confidence(0.04) benign(0.036) TCGA-DA-A960-01 4 69696393 69696393 C T UGT2B10 Silent p.F461F 0.42 TCGA-DA-A960-01 4 69973895 69973895 C T UGT2B7 Missense_Mutation p.P389S 0.19 deleterious(0) possibly_damaging(0.61) TCGA-DA-A960-01 4 70066373 70066373 G A UGT2B11 Nonsense_Mutation p.R459* 0.15 TCGA-DA-A960-01 4 70455112 70455112 C T UGT2A1 Missense_Mutation p.G687E 0.42 tolerated(0.19) benign(0.19) TCGA-DA-A960-01 4 71509424 71509424 C T ENAM Missense_Mutation p.P761S 0.40 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 4 74277801 74277801 G A ALB Missense_Mutation p.E268K 0.50 deleterious(0) probably_damaging(0.973) TCGA-DA-A960-01 4 77252537 77252537 C T CCDC158 Missense_Mutation p.D964N 0.36 deleterious(0.02) benign(0.049) TCGA-DA-A960-01 4 77288909 77288909 C T CCDC158 Silent p.K456K 0.20 TCGA-DA-A960-01 4 8307842 8307842 C T HTRA3 Silent p.I447I 0.26 TCGA-DA-A960-01 4 85664947 85664947 G A WDFY3 Silent p.S1993S 0.15 TCGA-DA-A960-01 4 87968481 87968481 C T AFF1 Missense_Mutation p.T265I 0.42 tolerated(0.11) benign(0.262) TCGA-DA-A960-01 4 87968482 87968482 C T AFF1 Silent p.T265T 0.42 TCGA-DA-A960-01 4 89334306 89334306 C T HERC6 Silent p.F482F 0.45 TCGA-DA-A960-01 5 110560280 110560280 G A CAMK4 Nonsense_Mutation p.W33* 0.56 TCGA-DA-A960-01 5 115141025 115141025 G A CDO1 3'UTR 0.42 TCGA-DA-A960-01 5 1212505 1212505 C T SLC6A19 Missense_Mutation p.S190L 0.20 deleterious(0) possibly_damaging(0.732) TCGA-DA-A960-01 5 1212596 1212596 G T SLC6A19 Silent p.G220G 0.19 TCGA-DA-A960-01 5 121409733 121409733 C T LOX Missense_Mutation p.R337Q 0.22 deleterious(0.02) possibly_damaging(0.669) TCGA-DA-A960-01 5 121758630 121758630 C T SNCAIP Silent p.I66I 0.43 TCGA-DA-A960-01 5 121759146 121759146 C T SNCAIP Silent p.I238I 0.26 TCGA-DA-A960-01 5 127713475 127713475 C T FBN2 Missense_Mutation p.E607K 0.44 tolerated(0.16) probably_damaging(0.919) TCGA-DA-A960-01 5 129521339 129521339 C T CHSY3 Missense_Mutation p.P835L 0.32 deleterious(0.03) possibly_damaging(0.617) TCGA-DA-A960-01 5 132046675 132046675 C T KIF3A Missense_Mutation p.G402R 0.18 tolerated(0.61) benign(0.026) TCGA-DA-A960-01 5 134782696 134782696 G A C5orf20 Missense_Mutation p.P35S 0.50 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-DA-A960-01 5 13708294 13708294 C T DNAH5 Missense_Mutation p.E4426K 0.39 possibly_damaging(0.635) TCGA-DA-A960-01 5 137528263 137528263 C T CDC23 Missense_Mutation p.G366S 0.26 tolerated(1) benign(0.007) TCGA-DA-A960-01 5 137756644 137756644 C T KDM3B Missense_Mutation p.S1322F 0.42 deleterious(0.01) benign(0.06) TCGA-DA-A960-01 5 13820549 13820549 G A DNAH5 Silent p.F2249F 0.39 TCGA-DA-A960-01 5 139885365 139885365 C T ANKHD1 Missense_Mutation p.L1107F 0.41 possibly_damaging(0.849) TCGA-DA-A960-01 5 140166830 140166830 C T PCDHA1 Nonsense_Mutation p.Q319* 0.43 TCGA-DA-A960-01 5 140208499 140208499 G A PCDHA6 Missense_Mutation p.G275R 0.38 tolerated_low_confidence(0.16) benign(0.262) TCGA-DA-A960-01 5 140230387 140230387 C T PCDHA9 Silent p.L769L 0.51 TCGA-DA-A960-01 5 140255514 140255514 C T PCDHA12 Missense_Mutation p.P153S 0.47 tolerated_low_confidence(0.08) possibly_damaging(0.733) TCGA-DA-A960-01 5 140603053 140603053 C T PCDHB14 5'Flank 0.37 TCGA-DA-A960-01 5 140725253 140725253 C T PCDHGA3 Silent p.F551F 0.52 TCGA-DA-A960-01 5 140750844 140750844 G A PCDHGB3 Missense_Mutation p.D295N 0.20 tolerated(0.53) benign(0.119) TCGA-DA-A960-01 5 140810438 140810438 G A PCDHGA12 Missense_Mutation p.E38K 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-DA-A960-01 5 146788314 146788314 G A DPYSL3 Missense_Mutation p.H337Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-DA-A960-01 5 147258309 147258309 G A SCGB3A2 5'UTR 0.19 TCGA-DA-A960-01 5 149276020 149276020 G A PDE6A Missense_Mutation p.H507Y 0.39 deleterious(0.01) probably_damaging(0.954) TCGA-DA-A960-01 5 151231057 151231057 G A GLRA1 Missense_Mutation p.S269F 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 5 153085489 153085489 C T GRIA1 Missense_Mutation p.P572L 0.21 deleterious(0) probably_damaging(0.964) TCGA-DA-A960-01 5 153835563 153835563 C T SAP30L Missense_Mutation p.S176L 0.20 tolerated(0.38) benign(0.001) TCGA-DA-A960-01 5 154315445 154315445 G A GEMIN5 Silent p.F155F 0.36 TCGA-DA-A960-01 5 156675898 156675898 C T ITK Missense_Mutation p.P558S 0.49 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 5 159831824 159831824 G A SLU7 Missense_Mutation p.L486F 0.39 tolerated(0.29) probably_damaging(0.987) TCGA-DA-A960-01 5 160721128 160721128 G A GABRB2 Missense_Mutation p.S500F 0.39 tolerated(0.55) benign(0.178) TCGA-DA-A960-01 5 160721254 160721254 C T GABRB2 Missense_Mutation p.R458Q 0.47 deleterious(0.04) possibly_damaging(0.884) TCGA-DA-A960-01 5 161119078 161119078 G A GABRA6 Missense_Mutation p.E320K 0.18 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 5 161524754 161524754 G A GABRG2 Nonsense_Mutation p.W146* 0.50 TCGA-DA-A960-01 5 168187886 168187886 A G SLIT3 Silent p.L556L 0.17 TCGA-DA-A960-01 5 17354276 17354276 G A CTD-2139B15.2 RNA 0.24 TCGA-DA-A960-01 5 175305957 175305957 G A CPLX2 Silent p.K26K 0.19 TCGA-DA-A960-01 5 176016583 176016583 G A CDHR2 Missense_Mutation p.E1058K 0.49 tolerated(0.13) benign(0.025) TCGA-DA-A960-01 5 176562874 176562874 C T NSD1 Missense_Mutation p.P257L 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DA-A960-01 5 176824817 176824817 G A SLC34A1 Missense_Mutation p.G484S 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-DA-A960-01 5 176938804 176938804 G A DDX41 Silent p.S619S 0.27 TCGA-DA-A960-01 5 178194285 178194285 G A AACSP1 RNA 0.42 TCGA-DA-A960-01 5 178358666 178358666 C T ZFP2 Missense_Mutation p.L118F 0.53 deleterious(0.03) possibly_damaging(0.895) TCGA-DA-A960-01 5 179545616 179545616 C T RASGEF1C Missense_Mutation p.R359Q 0.31 tolerated(0.26) benign(0.094) TCGA-DA-A960-01 5 180218716 180218716 A T MGAT1 Missense_Mutation p.I419N 0.50 probably_damaging(0.997) TCGA-DA-A960-01 5 180376957 180376957 C G BTNL8 Missense_Mutation p.L306V 0.38 tolerated(0.37) possibly_damaging(0.824) TCGA-DA-A960-01 5 21842373 21842373 G A CDH12 Silent p.I237I 0.36 TCGA-DA-A960-01 5 32088330 32088330 G A PDZD2 Silent p.S1592S 0.50 TCGA-DA-A960-01 5 35065560 35065560 G A PRLR Silent p.P500P 0.43 TCGA-DA-A960-01 5 35740067 35740067 C T SPEF2 Missense_Mutation p.S1037F 0.19 deleterious(0) probably_damaging(0.996) TCGA-DA-A960-01 5 35779376 35779376 G A SPEF2 Missense_Mutation p.E1459K 0.44 tolerated(0.07) probably_damaging(0.985) TCGA-DA-A960-01 5 36066816 36066816 G A UGT3A2 Silent p.L26L 0.46 TCGA-DA-A960-01 5 37169171 37169171 G A C5orf42 Nonsense_Mutation p.Q2319* 0.24 TCGA-DA-A960-01 5 40835319 40835319 G A RPL37 5'UTR 0.24 TCGA-DA-A960-01 5 41052629 41052629 G T MROH2B Silent p.R390R 0.53 TCGA-DA-A960-01 5 52385787 52385788 - ATA ITGA2 In_Frame_Ins p.I1121dup 0.17 TCGA-DA-A960-01 5 52402999 52402999 C T MOCS2 Silent p.S2S 0.48 TCGA-DA-A960-01 5 7743842 7743842 G A ADCY2 Missense_Mutation p.V645I 0.24 tolerated(1) benign(0.001) TCGA-DA-A960-01 5 78076139 78076139 G A ARSB 3'UTR 0.50 TCGA-DA-A960-01 5 7831908 7831908 G A C5orf49 3'UTR 0.21 TCGA-DA-A960-01 5 78359553 78359553 C T DMGDH Silent p.V53V 0.26 TCGA-DA-A960-01 5 79028333 79028333 G A CMYA5 Missense_Mutation p.E1249K 0.47 probably_damaging(0.956) TCGA-DA-A960-01 5 82834938 82834938 C T VCAN Missense_Mutation p.S2039F 0.54 deleterious(0) possibly_damaging(0.73) TCGA-DA-A960-01 5 89939723 89939723 C T GPR98 Missense_Mutation p.P886L 0.41 possibly_damaging(0.908) TCGA-DA-A960-01 5 89979793 89979793 G A GPR98 Missense_Mutation p.D2019N 0.47 probably_damaging(0.989) TCGA-DA-A960-01 5 94772519 94772519 G A FAM81B Missense_Mutation p.G268R 0.23 deleterious(0.04) possibly_damaging(0.527) TCGA-DA-A960-01 5 95255210 95255210 G A ELL2 Missense_Mutation p.H79Y 0.34 deleterious(0.01) benign(0.005) TCGA-DA-A960-01 5 96320833 96320833 C T LNPEP Missense_Mutation p.P304S 0.41 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 5 96333765 96333765 C T LNPEP Silent p.S523S 0.36 TCGA-DA-A960-01 6 110037744 110037744 C T FIG4 Nonsense_Mutation p.R88* 0.24 TCGA-DA-A960-01 6 110620212 110620212 C T METTL24 Silent p.R233R 0.24 TCGA-DA-A960-01 6 111701303 111701303 G A REV3L Missense_Mutation p.P446S 0.45 tolerated(0.42) benign(0.001) TCGA-DA-A960-01 6 116600631 116600631 C A TSPYL1 Silent p.L121L 0.43 TCGA-DA-A960-01 6 116758541 116758541 G A DSE 3'UTR 0.41 TCGA-DA-A960-01 6 117198505 117198505 G A RFX6 Missense_Mutation p.G23R 0.42 tolerated_low_confidence(0.7) benign(0.001) TCGA-DA-A960-01 6 117232149 117232149 C T RFX6 Missense_Mutation p.P242S 0.43 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 6 117609786 117609786 C T ROS1 Missense_Mutation p.E2305K 0.47 tolerated_low_confidence(0.1) benign(0.285) TCGA-DA-A960-01 6 12163836 12163836 C T HIVEP1 Silent p.V2433V 0.48 TCGA-DA-A960-01 6 123384982 123384982 G A CLVS2 3'UTR 0.25 TCGA-DA-A960-01 6 123653030 123653030 C T TRDN Missense_Mutation p.E489K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-DA-A960-01 6 127797298 127797298 C T SOGA3 Missense_Mutation p.D625N 0.57 deleterious(0.03) possibly_damaging(0.512) TCGA-DA-A960-01 6 132891552 132891552 C T TAAR6 Missense_Mutation p.S31F 0.20 tolerated(0.24) benign(0.14) TCGA-DA-A960-01 6 133044066 133044066 C T VNN3 3'UTR 0.57 TCGA-DA-A960-01 6 133827273 133827273 C T EYA4 Silent p.L407L 0.46 TCGA-DA-A960-01 6 133844316 133844316 G A EYA4 Splice_Site p.X580_splice 0.37 TCGA-DA-A960-01 6 155732470 155732470 C T NOX3 Missense_Mutation p.D445N 0.88 deleterious(0) possibly_damaging(0.734) TCGA-DA-A960-01 6 160977090 160977090 C G LPA Missense_Mutation p.R1647P 0.82 deleterious(0.03) possibly_damaging(0.733) TCGA-DA-A960-01 6 165715452 165715452 G T C6orf118 Missense_Mutation p.P120H 0.88 deleterious(0) probably_damaging(0.972) TCGA-DA-A960-01 6 169640669 169640669 G A THBS2 Missense_Mutation p.L304F 0.88 tolerated_low_confidence(0.08) benign(0.02) TCGA-DA-A960-01 6 17539625 17539625 G A CAP2 Silent p.E254E 0.40 TCGA-DA-A960-01 6 25921628 25921628 G A SLC17A2 Nonsense_Mutation p.Q85* 0.43 TCGA-DA-A960-01 6 30890518 30890518 C T VARS2 Silent p.D721D 0.24 TCGA-DA-A960-01 6 31556406 31556406 G A LST1 Missense_Mutation p.D90N 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-DA-A960-01 6 31594824 31594824 C T PRRC2A Missense_Mutation p.S380F 0.43 benign(0.184) TCGA-DA-A960-01 6 31748549 31748549 G A VARS Silent p.F910F 0.22 TCGA-DA-A960-01 6 31759998 31759998 C A VARS Missense_Mutation p.K289N 0.46 deleterious(0) probably_damaging(0.992) TCGA-DA-A960-01 6 31932042 31932042 C T SKIV2L Silent p.L632L 0.46 TCGA-DA-A960-01 6 31997048 31997048 C T C4B Silent p.T1203T 0.21 TCGA-DA-A960-01 6 32784740 32784740 G A HLA-DOB 5'UTR 0.19 TCGA-DA-A960-01 6 33037512 33037512 G A HLA-DPA1 Silent p.S84S 0.41 TCGA-DA-A960-01 6 33411384 33411384 C T SYNGAP1 Missense_Mutation p.R1019C 0.36 deleterious(0) probably_damaging(0.939) TCGA-DA-A960-01 6 35201065 35201065 G A SCUBE3 Silent p.G233G 0.21 TCGA-DA-A960-01 6 36298315 36298315 C T C6orf222 Silent p.T51T 0.25 TCGA-DA-A960-01 6 36891136 36891136 C T C6orf89 Silent p.T328T 0.09 TCGA-DA-A960-01 6 38718294 38718294 G A DNAH8 Missense_Mutation p.E229K 0.51 probably_damaging(1) TCGA-DA-A960-01 6 41250353 41250353 C T TREM1 Silent p.E62E 0.24 TCGA-DA-A960-01 6 41555200 41555200 C T FOXP4 Silent p.H274H 0.16 TCGA-DA-A960-01 6 42236035 42236035 C T TRERF1 Missense_Mutation p.G432R 0.12 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-DA-A960-01 6 42236203 42236203 G T TRERF1 Missense_Mutation p.Q376K 0.20 deleterious_low_confidence(0.01) benign(0.042) TCGA-DA-A960-01 6 42854133 42854133 C T RPL7L1 Silent p.F224F 0.56 TCGA-DA-A960-01 6 43480927 43480927 G A YIPF3 Silent p.T182T 0.41 TCGA-DA-A960-01 6 43523697 43523697 G A XPO5 Silent p.S439S 0.16 TCGA-DA-A960-01 6 45882141 45882141 C T CLIC5 Missense_Mutation p.E297K 0.48 deleterious(0.01) possibly_damaging(0.454) TCGA-DA-A960-01 6 46136029 46136029 G A ENPP5 5'UTR 0.13 TCGA-DA-A960-01 6 46834841 46834841 G A GPR116 Missense_Mutation p.S552L 0.50 tolerated(0.63) benign(0.014) TCGA-DA-A960-01 6 47649982 47649982 C T GPR111 Silent p.L563L 0.46 TCGA-DA-A960-01 6 54805004 54805004 C T FAM83B Missense_Mutation p.P412L 0.45 tolerated(0.41) benign(0.001) TCGA-DA-A960-01 6 55039332 55039332 G A HCRTR2 5'UTR 0.12 TCGA-DA-A960-01 6 56468993 56468993 C T DST Intron 0.39 TCGA-DA-A960-01 6 57012196 57012196 C T ZNF451 Missense_Mutation p.S438L 0.35 deleterious(0.03) benign(0.11) TCGA-DA-A960-01 6 62390891 62390891 C T KHDRBS2 Missense_Mutation p.E343K 0.45 tolerated(0.2) benign(0.007) TCGA-DA-A960-01 6 63990337 63990337 C T LGSN Silent p.R373R 0.41 TCGA-DA-A960-01 6 76023351 76023351 C T FILIP1 Missense_Mutation p.E733K 0.46 tolerated(0.09) possibly_damaging(0.856) TCGA-DA-A960-01 6 83921581 83921581 C T ME1 3'UTR 0.19 TCGA-DA-A960-01 6 84292049 84292049 A T SNAP91 Missense_Mutation p.S681T 0.18 tolerated(0.3) probably_damaging(0.958) TCGA-DA-A960-01 6 84292063 84292063 G A SNAP91 Missense_Mutation p.S676F 0.50 deleterious(0.04) possibly_damaging(0.854) TCGA-DA-A960-01 6 93969166 93969166 G A EPHA7 Silent p.D610D 0.22 TCGA-DA-A960-01 6 96651370 96651370 C T FUT9 Silent p.I113I 0.47 TCGA-DA-A960-01 7 100205417 100205417 C T PCOLCE Silent p.P390P 0.47 TCGA-DA-A960-01 7 105401704 105401704 G A ATXN7L1 Intron 0.32 TCGA-DA-A960-01 7 105401705 105401705 G A ATXN7L1 Intron 0.32 TCGA-DA-A960-01 7 107756464 107756464 G A LAMB4 Silent p.I59I 0.52 TCGA-DA-A960-01 7 11514193 11514193 C T THSD7A Missense_Mutation p.G674R 0.11 tolerated(0.11) benign(0.077) TCGA-DA-A960-01 7 116436284 116436284 T A MET 3'UTR 0.31 TCGA-DA-A960-01 7 116955182 116955182 C T WNT2 Silent p.R177R 0.23 TCGA-DA-A960-01 7 122338231 122338231 C A RNF133 Nonsense_Mutation p.E248* 0.33 TCGA-DA-A960-01 7 127958051 127958051 G A RBM28 Missense_Mutation p.R558C 0.30 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 7 127958052 127958052 G A RBM28 Silent p.L557L 0.32 TCGA-DA-A960-01 7 128494223 128494223 G A FLNC Missense_Mutation p.G2227D 0.42 deleterious(0.05) benign(0) TCGA-DA-A960-01 7 129110509 129110509 C T STRIP2 Missense_Mutation p.P633S 0.20 deleterious(0) probably_damaging(0.982) TCGA-DA-A960-01 7 142001152 142001152 G A TRBV2 Missense_Mutation p.D49N 0.44 TCGA-DA-A960-01 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.16 TCGA-DA-A960-01 7 142168910 142168910 G A TRBV5-4 5'UTR 0.31 TCGA-DA-A960-01 7 142460912 142460912 C T PRSS1 3'UTR 0.37 TCGA-DA-A960-01 7 142654997 142654997 G A KEL Silent p.L197L 0.38 TCGA-DA-A960-01 7 143097114 143097114 G T EPHA1 Silent p.T155T 0.11 TCGA-DA-A960-01 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.44 tolerated(1) benign(0.006) TCGA-DA-A960-01 7 146741125 146741125 G A CNTNAP2 Missense_Mutation p.E177K 0.40 deleterious(0) probably_damaging(0.994) TCGA-DA-A960-01 7 148515177 148515177 G A EZH2 Silent p.T344T 0.17 TCGA-DA-A960-01 7 149986547 149986547 C T ACTR3C Missense_Mutation p.A97T 0.14 tolerated(0.54) benign(0.006) TCGA-DA-A960-01 7 150439896 150439896 C T GIMAP5 Silent p.L223L 0.42 TCGA-DA-A960-01 7 151699800 151699800 G A GALNTL5 Silent p.G220G 0.38 TCGA-DA-A960-01 7 157985097 157985097 G A PTPRN2 Silent p.F157F 0.45 TCGA-DA-A960-01 7 20198904 20198904 G A MACC1 Silent p.A360A 0.41 TCGA-DA-A960-01 7 20682958 20682958 G A ABCB5 Missense_Mutation p.D156N 0.35 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 7 24690131 24690131 G A MPP6 Missense_Mutation p.D151N 0.49 tolerated(0.36) benign(0.004) TCGA-DA-A960-01 7 30951726 30951726 G A AQP1 Missense_Mutation p.G68S 0.50 deleterious(0.03) probably_damaging(1) TCGA-DA-A960-01 7 30951727 30951727 G A AQP1 Missense_Mutation p.G68D 0.51 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 7 31746906 31746906 C T PPP1R17 3'UTR 0.12 TCGA-DA-A960-01 7 32109937 32109937 C T PDE1C Intron 0.18 TCGA-DA-A960-01 7 34182949 34182949 G A BMPER Nonsense_Mutation p.W618* 0.32 TCGA-DA-A960-01 7 34867106 34867106 C T NPSR1 Missense_Mutation p.S191F 0.18 deleterious(0.03) possibly_damaging(0.789) TCGA-DA-A960-01 7 34867107 34867107 C T NPSR1 Silent p.S191S 0.18 TCGA-DA-A960-01 7 37382251 37382251 G A ELMO1 Missense_Mutation p.P15L 0.40 tolerated(0.14) probably_damaging(0.999) TCGA-DA-A960-01 7 41729806 41729806 C T INHBA Silent p.R241R 0.50 TCGA-DA-A960-01 7 44869747 44869747 G A H2AFV 3'Flank 0.42 TCGA-DA-A960-01 7 48314719 48314719 T C ABCA13 Missense_Mutation p.F1819S 0.37 benign(0.424) TCGA-DA-A960-01 7 48559813 48559813 C T ABCA13 Silent p.F4658F 0.22 TCGA-DA-A960-01 7 5567919 5567919 G A ACTB Silent p.S265S 0.20 TCGA-DA-A960-01 7 6647706 6647706 C T C7orf26 Missense_Mutation p.H422Y 0.67 deleterious_low_confidence(0.01) benign(0.291) TCGA-DA-A960-01 7 72410507 72410507 G A POM121 Silent p.L256L 0.14 TCGA-DA-A960-01 7 7613768 7613768 C T MIOS Missense_Mutation p.P445L 0.34 tolerated(0.75) benign(0) TCGA-DA-A960-01 7 77797267 77797267 G A MAGI2 Silent p.V854V 0.50 TCGA-DA-A960-01 7 77885270 77885270 G A MAGI2 Silent p.I679I 0.40 TCGA-DA-A960-01 7 8153468 8153468 A T ICA1 3'UTR 0.41 TCGA-DA-A960-01 7 83047787 83047787 G A SEMA3E Missense_Mutation p.H157Y 0.52 tolerated(0.08) benign(0.006) TCGA-DA-A960-01 7 86469000 86469000 G A GRM3 Missense_Mutation p.E724K 0.50 tolerated(0.88) benign(0.217) TCGA-DA-A960-01 7 87170756 87170756 C T ABCB1 Missense_Mutation p.E746K 0.20 tolerated(0.18) benign(0.005) TCGA-DA-A960-01 7 87323230 87323230 C T RUNDC3B Missense_Mutation p.S82F 0.19 tolerated_low_confidence(0.14) benign(0.013) TCGA-DA-A960-01 7 87913245 87913245 G A STEAP4 Missense_Mutation p.P114S 0.46 tolerated(0.1) benign(0.126) TCGA-DA-A960-01 7 88423853 88423853 G A C7orf62 Missense_Mutation p.S135F 0.19 deleterious(0) probably_damaging(0.944) TCGA-DA-A960-01 7 88964676 88964676 G A ZNF804B Missense_Mutation p.E794K 0.34 tolerated(0.68) benign(0.003) TCGA-DA-A960-01 7 91863782 91863782 G A KRIT1 Missense_Mutation p.P324S 0.47 deleterious(0.04) probably_damaging(0.96) TCGA-DA-A960-01 7 92027692 92027692 C T ANKIB1 Missense_Mutation p.P900L 0.15 tolerated_low_confidence(0.1) benign(0.015) TCGA-DA-A960-01 7 93519528 93519528 G A TFPI2 Silent p.F64F 0.38 TCGA-DA-A960-01 7 94953832 94953832 G A PON1 5'UTR 0.31 TCGA-DA-A960-01 8 100796669 100796669 C A VPS13B Missense_Mutation p.H2661N 0.04 deleterious(0) benign(0.322) TCGA-DA-A960-01 8 101020674 101020674 C T RGS22 Missense_Mutation p.E764K 0.22 deleterious(0) probably_damaging(0.998) TCGA-DA-A960-01 8 10390496 10390496 C T PRSS55 Missense_Mutation p.P227S 0.26 tolerated(0.15) possibly_damaging(0.739) TCGA-DA-A960-01 8 10469245 10469245 C T RP1L1 Missense_Mutation p.G788E 0.69 benign(0.13) TCGA-DA-A960-01 8 10756066 10756066 C T XKR6 Missense_Mutation p.R441Q 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-DA-A960-01 8 113237104 113237104 G A CSMD3 Nonsense_Mutation p.Q3674* 0.19 TCGA-DA-A960-01 8 11414186 11414186 G A BLK Missense_Mutation p.M264I 0.22 tolerated(0.1) benign(0.001) TCGA-DA-A960-01 8 128428205 128428205 C T POU5F1B Missense_Mutation p.P32S 0.78 tolerated(0.12) possibly_damaging(0.753) TCGA-DA-A960-01 8 134063137 134063137 C T SLA Missense_Mutation p.V69M 0.25 deleterious(0.01) probably_damaging(1) TCGA-DA-A960-01 8 139164616 139164616 C T FAM135B Missense_Mutation p.R701Q 0.73 deleterious(0.02) probably_damaging(0.984) TCGA-DA-A960-01 8 139165030 139165030 G A FAM135B Missense_Mutation p.P563L 0.67 tolerated(0.05) benign(0.004) TCGA-DA-A960-01 8 141321403 141321403 G A TRAPPC9 Silent p.A620A 0.28 TCGA-DA-A960-01 8 142367571 142367571 G A GPR20 Silent p.A151A 0.18 TCGA-DA-A960-01 8 143784841 143784841 C T LY6K 3'UTR 0.19 TCGA-DA-A960-01 8 144992764 144992764 A T PLEC Missense_Mutation p.L3879Q 0.18 probably_damaging(1) TCGA-DA-A960-01 8 144994801 144994801 C T PLEC Missense_Mutation p.G3200D 0.67 probably_damaging(0.998) TCGA-DA-A960-01 8 145161270 145161270 C T MAF1 Silent p.L135L 0.66 TCGA-DA-A960-01 8 17422722 17422722 G T SLC7A2 3'UTR 0.36 TCGA-DA-A960-01 8 17579271 17579271 G A MTUS1 Intron 0.67 TCGA-DA-A960-01 8 17581326 17581326 C T MTUS1 Silent p.L768L 0.64 TCGA-DA-A960-01 8 18666347 18666347 C T PSD3 Intron 0.19 TCGA-DA-A960-01 8 25898454 25898454 C T EBF2 Splice_Site p.X118_splice 0.19 TCGA-DA-A960-01 8 2886855 2886855 C T CSMD1 Missense_Mutation p.R2614K 0.61 benign(0.005) TCGA-DA-A960-01 8 33310846 33310846 G A FUT10 Silent p.S88S 0.19 TCGA-DA-A960-01 8 35608159 35608159 G A UNC5D Silent p.A665A 0.30 TCGA-DA-A960-01 8 38124764 38124764 G T PPAPDC1B Intron 0.30 TCGA-DA-A960-01 8 39564346 39564346 G A ADAM18 Missense_Mutation p.G647E 0.69 deleterious(0) benign(0.435) TCGA-DA-A960-01 8 39607247 39607247 C T ADAM2 Missense_Mutation p.R605K 0.60 tolerated(0.44) benign(0.002) TCGA-DA-A960-01 8 39682415 39682415 T G ADAM2 Missense_Mutation p.N64H 0.28 tolerated(0.54) benign(0.012) TCGA-DA-A960-01 8 41547822 41547822 G A ANK1 Silent p.L1384L 0.20 TCGA-DA-A960-01 8 49985427 49985427 G A C8orf22 Missense_Mutation p.R13K 0.62 tolerated(1) benign(0.001) TCGA-DA-A960-01 8 56699214 56699214 C T TGS1 Nonsense_Mutation p.Q253* 0.18 TCGA-DA-A960-01 8 56985746 56985746 A G RPS20 Missense_Mutation p.L88P 0.17 deleterious(0) probably_damaging(0.936) TCGA-DA-A960-01 8 57224838 57224838 C T SDR16C5 Missense_Mutation p.E115K 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 8 59360029 59360029 G A UBXN2B Silent p.P305P 0.69 TCGA-DA-A960-01 8 63492159 63492159 G A NKAIN3 Missense_Mutation p.G39E 0.25 deleterious(0) probably_damaging(0.948) TCGA-DA-A960-01 8 70536216 70536216 C T SULF1 Missense_Mutation p.S545F 0.20 deleterious(0) possibly_damaging(0.516) TCGA-DA-A960-01 8 73849621 73849621 C T KCNB2 Silent p.N677N 0.53 TCGA-DA-A960-01 8 76459906 76459906 G A HNF4G Missense_Mutation p.M114I 0.64 deleterious(0.02) benign(0.309) TCGA-DA-A960-01 8 92301385 92301385 C T SLC26A7 Missense_Mutation p.S72L 0.21 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 8 95161047 95161047 C T CDH17 Missense_Mutation p.E618K 0.41 tolerated(0.07) benign(0.284) TCGA-DA-A960-01 8 95262513 95262513 G A GEM 3'UTR 0.22 TCGA-DA-A960-01 8 99963754 99963754 C T OSR2 Missense_Mutation p.P255L 0.31 deleterious(0.01) benign(0) TCGA-DA-A960-01 9 103338826 103338826 C T TMEFF1 Nonsense_Mutation p.R363* 0.55 TCGA-DA-A960-01 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.55 TCGA-DA-A960-01 9 107564397 107564397 G A ABCA1 Missense_Mutation p.P1546S 0.27 tolerated(0.33) benign(0.034) TCGA-DA-A960-01 9 111909415 111909415 C T FRRS1L Silent p.R177R 0.29 TCGA-DA-A960-01 9 111909416 111909416 C T FRRS1L Missense_Mutation p.R177Q 0.29 tolerated(0.12) possibly_damaging(0.825) TCGA-DA-A960-01 9 112195404 112195404 G A PTPN3 Missense_Mutation p.S238F 0.23 deleterious(0) probably_damaging(0.971) TCGA-DA-A960-01 9 113192603 113192603 G A SVEP1 Silent p.I1827I 0.31 TCGA-DA-A960-01 9 121929759 121929759 C T BRINP1 Missense_Mutation p.R630Q 0.53 tolerated(0.58) possibly_damaging(0.885) TCGA-DA-A960-01 9 123583197 123583197 G A PSMD5 Missense_Mutation p.R393W 0.35 deleterious(0.02) benign(0.005) TCGA-DA-A960-01 9 124929130 124929130 G A MORN5 Missense_Mutation p.G44E 0.24 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 9 125377182 125377182 C T OR1Q1 Missense_Mutation p.H56Y 0.32 deleterious(0.01) benign(0.328) TCGA-DA-A960-01 9 128064759 128064759 C T GAPVD1 Missense_Mutation p.P228L 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-DA-A960-01 9 128692040 128692040 G A PBX3 Missense_Mutation p.R208Q 0.32 tolerated(0.08) probably_damaging(0.971) TCGA-DA-A960-01 9 130097568 130097568 C T GARNL3 Missense_Mutation p.H277Y 0.29 deleterious(0) possibly_damaging(0.717) TCGA-DA-A960-01 9 130495789 130495789 G A TOR2A Silent p.S156S 0.40 TCGA-DA-A960-01 9 131559476 131559476 C T TBC1D13 Missense_Mutation p.R176W 0.21 tolerated(0.07) possibly_damaging(0.762) TCGA-DA-A960-01 9 139371317 139371317 G A SEC16A Missense_Mutation p.P251S 0.61 tolerated(0.13) benign(0.041) TCGA-DA-A960-01 9 140052889 140052889 G A GRIN1 Missense_Mutation p.D364N 0.30 tolerated(0.63) possibly_damaging(0.906) TCGA-DA-A960-01 9 140417276 140417276 G A PNPLA7 Missense_Mutation p.R261C 0.23 deleterious(0) probably_damaging(0.987) TCGA-DA-A960-01 9 140878604 140878604 C T CACNA1B Silent p.S557S 0.38 TCGA-DA-A960-01 9 14801729 14801729 G A FREM1 Silent p.F1205F 0.35 TCGA-DA-A960-01 9 14804998 14804998 G A FREM1 Missense_Mutation p.P1143S 0.33 deleterious(0) probably_damaging(0.957) TCGA-DA-A960-01 9 14863874 14863874 C T FREM1 Missense_Mutation p.E88K 0.36 deleterious(0.02) possibly_damaging(0.691) TCGA-DA-A960-01 9 17787443 17787443 A G SH3GL2 Missense_Mutation p.I133V 0.31 tolerated(0.61) benign(0.015) TCGA-DA-A960-01 9 21217004 21217004 C T IFNA16 Missense_Mutation p.D101N 0.60 tolerated(1) benign(0.015) TCGA-DA-A960-01 9 2648794 2648794 A T VLDLR Missense_Mutation p.E696D 0.54 tolerated(0.09) benign(0.118) TCGA-DA-A960-01 9 2648795 2648795 C T VLDLR Missense_Mutation p.L697F 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-DA-A960-01 9 36665494 36665494 C T MELK Missense_Mutation p.P442S 0.21 tolerated(0.06) benign(0.128) TCGA-DA-A960-01 9 37974769 37974769 C T SHB Missense_Mutation p.E302K 0.74 deleterious(0) probably_damaging(0.937) TCGA-DA-A960-01 9 3856128 3856128 G T GLIS3 Missense_Mutation p.P785H 0.68 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 9 71532545 71532545 G A PIP5K1B Missense_Mutation p.E285K 0.29 tolerated(0.65) benign(0.006) TCGA-DA-A960-01 9 77249624 77249624 G A RORB Silent p.T57T 0.22 TCGA-DA-A960-01 9 77359010 77359010 C G TRPM6 Splice_Site p.X1712_splice 0.59 TCGA-DA-A960-01 9 78973770 78973770 G A PCSK5 Missense_Mutation p.G1839R 0.57 deleterious(0) probably_damaging(0.985) TCGA-DA-A960-01 9 79118212 79118212 C T GCNT1 Silent p.I305I 0.22 TCGA-DA-A960-01 9 80921339 80921339 G A PSAT1 Silent p.K169K 0.62 TCGA-DA-A960-01 9 82334996 82334996 C T TLE4 Silent p.L542L 0.33 TCGA-DA-A960-01 9 84605849 84605849 C T SPATA31D1 Missense_Mutation p.S155F 0.58 tolerated(0.32) benign(0.081) TCGA-DA-A960-01 9 86955598 86955598 G A SLC28A3 5'UTR 0.27 TCGA-DA-A960-01 9 88642735 88642735 G A GOLM1 Silent p.L401L 0.24 TCGA-DA-A960-01 9 96080278 96080278 C T WNK2 Missense_Mutation p.S2288F 0.26 unknown(0) TCGA-DA-A960-01 9 99083581 99083581 G A SLC35D2 Silent p.S319S 0.21 TCGA-DA-A960-01 9 99580329 99580329 G A ZNF782 Missense_Mutation p.S659F 0.27 deleterious(0) probably_damaging(0.999) TCGA-DA-A960-01 X 100503507 100503507 C T DRP2 Missense_Mutation p.R487C 0.91 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 X 101970311 101970311 G A GPRASP2 Missense_Mutation p.D172N 0.50 tolerated(0.12) benign(0.093) TCGA-DA-A960-01 X 107431116 107431116 C T COL4A6 Missense_Mutation p.D578N 0.88 benign(0.429) TCGA-DA-A960-01 X 107431117 107431117 C T COL4A6 Silent p.K577K 0.88 TCGA-DA-A960-01 X 110644409 110644409 C T DCX Missense_Mutation p.E253K 0.49 tolerated(0.08) possibly_damaging(0.459) TCGA-DA-A960-01 X 12885676 12885676 C T TLR7 5'UTR 0.94 TCGA-DA-A960-01 X 129162644 129162644 C T BCORL1 Silent p.S1371S 0.89 TCGA-DA-A960-01 X 12937325 12937325 G A TLR8 Missense_Mutation p.E56K 0.51 tolerated(0.12) benign(0.008) TCGA-DA-A960-01 X 12938649 12938649 G A TLR8 Missense_Mutation p.G497E 0.88 tolerated(0.09) benign(0.062) TCGA-DA-A960-01 X 130215550 130215550 C T ARHGAP36 5'UTR 0.95 TCGA-DA-A960-01 X 130411091 130411091 A C IGSF1 Silent p.L815L 0.48 TCGA-DA-A960-01 X 130419186 130419186 C T IGSF1 Missense_Mutation p.E212K 0.33 tolerated(0.12) benign(0.113) TCGA-DA-A960-01 X 13337370 13337370 A G ATXN3L Silent p.D228D 0.40 TCGA-DA-A960-01 X 135630950 135630950 C T VGLL1 Silent p.T139T 0.94 TCGA-DA-A960-01 X 140785663 140785663 C T SPANXD Missense_Mutation p.E85K 0.38 tolerated_low_confidence(0.17) benign(0.002) TCGA-DA-A960-01 X 140785720 140785720 C T SPANXD Missense_Mutation p.E66K 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-DA-A960-01 X 142967209 142967209 G A UBE2NL Missense_Mutation p.E3K 0.54 tolerated_low_confidence(0.15) benign(0.001) TCGA-DA-A960-01 X 14622486 14622486 G A GLRA2 Missense_Mutation p.D182N 0.95 deleterious(0.01) possibly_damaging(0.558) TCGA-DA-A960-01 X 15593880 15593880 G A ACE2 Missense_Mutation p.P451S 0.44 deleterious(0) probably_damaging(1) TCGA-DA-A960-01 X 16170609 16170609 G A GRPR Silent p.Q332Q 0.96 TCGA-DA-A960-01 X 17157007 17157007 C T REPS2 Nonsense_Mutation p.Q613* 0.52 TCGA-DA-A960-01 X 19049150 19049150 T C GPR64 Missense_Mutation p.K104E 0.88 deleterious_low_confidence(0.01) possibly_damaging(0.589) TCGA-DA-A960-01 X 2408599 2408599 G A ZBED1 Silent p.I54I 0.42 TCGA-DA-A960-01 X 34150389 34150389 C T FAM47A Missense_Mutation p.D3N 0.93 deleterious(0.01) probably_damaging(0.981) TCGA-DA-A960-01 X 35944249 35944249 C T CXorf22 Missense_Mutation p.S122L 0.97 tolerated(0.66) benign(0.013) TCGA-DA-A960-01 X 37028366 37028366 C T FAM47C Missense_Mutation p.S628F 0.26 deleterious(0.03) possibly_damaging(0.865) TCGA-DA-A960-01 X 37587470 37587470 C T XK Missense_Mutation p.L364F 0.88 tolerated(0.53) benign(0.162) TCGA-DA-A960-01 X 40456897 40456897 C T ATP6AP2 Missense_Mutation p.S172F 0.48 deleterious(0) probably_damaging(0.94) TCGA-DA-A960-01 X 47041687 47041687 G A RBM10 Missense_Mutation p.E638K 1.00 tolerated(0.1) probably_damaging(0.985) TCGA-DA-A960-01 X 54263581 54263581 C T WNK3 Missense_Mutation p.S1473N 0.41 deleterious(0.04) benign(0.423) TCGA-DA-A960-01 X 55052353 55052353 C T ALAS2 Silent p.K27K 0.91 TCGA-DA-A960-01 X 55052354 55052354 T C ALAS2 Missense_Mutation p.K27R 0.91 tolerated(0.16) benign(0.002) TCGA-DA-A960-01 X 65418856 65418856 C T HEPH Missense_Mutation p.S671F 0.91 deleterious(0) probably_damaging(0.995) TCGA-DA-A960-01 X 6995343 6995343 G A HDHD1 Missense_Mutation p.P166L 1.00 tolerated(0.06) possibly_damaging(0.461) TCGA-DA-A960-01 X 70367907 70367907 C T NLGN3 Missense_Mutation p.P103L 0.50 deleterious(0.01) benign(0.027) TCGA-DA-A960-01 X 73964293 73964293 C T KIAA2022 Silent p.V33V 0.28 TCGA-DA-A960-01 X 99956537 99956537 C T SYTL4 Silent p.R81R 0.08 TCGA-EB-A1NK-01 10 107007001 107007001 C T SORCS3 Missense_Mutation p.S1006L 0.41 deleterious(0.02) benign(0.11) TCGA-EB-A1NK-01 10 118084575 118084575 G A CCDC172 Missense_Mutation p.E18K 0.27 tolerated(0.26) possibly_damaging(0.747) TCGA-EB-A1NK-01 10 124395534 124395534 T A DMBT1 Nonsense_Mutation p.Y2063* 0.31 TCGA-EB-A1NK-01 10 27538044 27538044 C T RP11-85G18.6 Intron 0.37 TCGA-EB-A1NK-01 10 409183 409183 T C DIP2C Missense_Mutation p.D849G 0.26 tolerated(0.16) benign(0.444) TCGA-EB-A1NK-01 10 45878120 45878120 G A ALOX5 Missense_Mutation p.D114N 0.24 deleterious(0.03) benign(0.32) TCGA-EB-A1NK-01 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.38 deleterious(0) probably_damaging(0.998) TCGA-EB-A1NK-01 10 67680226 67680226 C T CTNNA3 Missense_Mutation p.M850I 0.38 deleterious(0) unknown(0) TCGA-EB-A1NK-01 11 102575479 102575479 C T MMP27 Missense_Mutation p.E44K 0.19 tolerated(0.77) possibly_damaging(0.744) TCGA-EB-A1NK-01 11 120957608 120957608 C T TBCEL Missense_Mutation p.R360C 0.24 tolerated(0.07) probably_damaging(0.988) TCGA-EB-A1NK-01 11 130284706 130284706 G A ADAMTS8 Missense_Mutation p.P429L 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 11 130284707 130284707 G A ADAMTS8 Missense_Mutation p.P429S 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 11 17191054 17191054 G A PIK3C2A Missense_Mutation p.P79S 0.28 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-EB-A1NK-01 11 47264422 47264422 C T ACP2 Silent p.R330R 0.28 TCGA-EB-A1NK-01 11 5443553 5443553 C T OR51Q1 Silent p.I41I 0.24 TCGA-EB-A1NK-01 11 58170715 58170715 G A OR5B3 Silent p.P56P 0.35 TCGA-EB-A1NK-01 11 63177310 63177310 G A SLC22A9 Silent p.P546P 0.28 TCGA-EB-A1NK-01 11 63283866 63283866 G A LGALS12 3'UTR 0.23 TCGA-EB-A1NK-01 11 73814461 73814461 G A C2CD3 Silent p.L765L 0.23 TCGA-EB-A1NK-01 12 12629826 12629826 C T DUSP16 Missense_Mutation p.G647R 0.25 deleterious(0.05) benign(0.167) TCGA-EB-A1NK-01 12 25149189 25149189 G A C12orf77 Silent p.L30L 0.21 TCGA-EB-A1NK-01 12 46123826 46123826 G A ARID2 Splice_Site p.X31_splice 0.62 TCGA-EB-A1NK-01 12 46123827 46123827 G A ARID2 Silent p.G31G 0.62 TCGA-EB-A1NK-01 12 46215264 46215264 C T ARID2 Silent p.F233F 0.52 TCGA-EB-A1NK-01 12 54686799 54686799 C T NFE2 Missense_Mutation p.E161K 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A1NK-01 12 65088620 65088620 C T RASSF3 Silent p.N215N 0.53 TCGA-EB-A1NK-01 12 65088621 65088621 C T RASSF3 Silent p.L216L 0.53 TCGA-EB-A1NK-01 12 6781567 6781567 G A ZNF384 Missense_Mutation p.S348F 0.28 deleterious(0.01) benign(0.001) TCGA-EB-A1NK-01 12 75445031 75445031 C T KCNC2 Missense_Mutation p.E252K 0.50 deleterious(0.05) probably_damaging(0.941) TCGA-EB-A1NK-01 12 85449578 85449578 G A LRRIQ1 Missense_Mutation p.R336Q 0.65 tolerated(0.4) benign(0.016) TCGA-EB-A1NK-01 13 113485797 113485797 G A ATP11A Missense_Mutation p.G444R 0.43 deleterious(0.02) possibly_damaging(0.846) TCGA-EB-A1NK-01 13 25008631 25008631 G A PARP4 Silent p.L1550L 0.26 TCGA-EB-A1NK-01 13 36396997 36396997 C T DCLK1 Missense_Mutation p.D475N 0.29 deleterious(0.02) benign(0.192) TCGA-EB-A1NK-01 13 37269131 37269131 T A SERTM1 5'UTR 0.43 TCGA-EB-A1NK-01 13 42875110 42875110 C T AKAP11 Missense_Mutation p.S743F 0.22 tolerated(0.6) benign(0.02) TCGA-EB-A1NK-01 13 58240609 58240610 - T PCDH17 Frame_Shift_Ins p.P860Sfs*17 0.26 TCGA-EB-A1NK-01 13 72063185 72063185 G A DACH1 Missense_Mutation p.P558S 0.31 probably_damaging(0.976) TCGA-EB-A1NK-01 13 97640022 97640022 C T OXGR1 5'UTR 0.21 TCGA-EB-A1NK-01 14 106068010 106068010 G A IGHE Missense_Mutation p.P19L 0.25 tolerated(0.3) benign(0) TCGA-EB-A1NK-01 14 106518841 106518841 G A IGHV3-7 Silent p.L5L 0.32 TCGA-EB-A1NK-01 14 20215763 20215763 T G OR4Q3 Silent p.P59P 0.14 TCGA-EB-A1NK-01 14 55475343 55475343 G A WDHD1 Missense_Mutation p.P146S 0.33 deleterious(0) probably_damaging(0.992) TCGA-EB-A1NK-01 14 63316439 63316439 G A KCNH5 Missense_Mutation p.L501F 0.30 deleterious(0) probably_damaging(0.998) TCGA-EB-A1NK-01 15 100591818 100591818 G A ADAMTS17 Missense_Mutation p.T805I 0.30 tolerated(0.14) probably_damaging(0.996) TCGA-EB-A1NK-01 15 20488779 20488779 G A CHEK2P2 RNA 0.07 TCGA-EB-A1NK-01 15 28408339 28408339 C A HERC2 Silent p.V3549V 0.32 TCGA-EB-A1NK-01 15 43028535 43028535 G A CDAN1 Silent p.F178F 0.41 TCGA-EB-A1NK-01 15 52970206 52970206 G T FAM214A Silent p.R5R 0.34 TCGA-EB-A1NK-01 15 75309008 75309008 T G SCAMP5 Missense_Mutation p.F71V 0.24 deleterious(0) benign(0.209) TCGA-EB-A1NK-01 15 75981813 75981813 G A CSPG4 Silent p.P531P 0.43 TCGA-EB-A1NK-01 16 14973913 14973913 C T NOMO1 Silent p.F933F 0.17 TCGA-EB-A1NK-01 16 14973914 14973914 C T NOMO1 Missense_Mutation p.R934W 0.17 deleterious(0) probably_damaging(0.948) TCGA-EB-A1NK-01 16 1962005 1962005 G A HS3ST6 Silent p.R174R 0.62 TCGA-EB-A1NK-01 16 2203440 2203440 C G RAB26 3'UTR 0.45 TCGA-EB-A1NK-01 16 23080670 23080670 G A USP31 Missense_Mutation p.S919F 0.29 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-EB-A1NK-01 16 3254944 3254944 G A OR1F1 Missense_Mutation p.G233E 0.29 deleterious(0) probably_damaging(0.994) TCGA-EB-A1NK-01 17 11711083 11711083 G A DNAH9 Missense_Mutation p.G2819R 0.10 probably_damaging(1) TCGA-EB-A1NK-01 17 11711084 11711084 G A DNAH9 Missense_Mutation p.G2819E 0.09 probably_damaging(0.999) TCGA-EB-A1NK-01 17 11790183 11790183 C T DNAH9 Silent p.A3671A 0.41 TCGA-EB-A1NK-01 17 3119823 3119823 C T OR1A1 Silent p.F303F 0.29 TCGA-EB-A1NK-01 17 3656589 3656589 C T ITGAE Missense_Mutation p.E555K 0.25 tolerated(0.55) benign(0.006) TCGA-EB-A1NK-01 17 5433872 5433872 G A NLRP1 Missense_Mutation p.P1150L 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 17 62131671 62131671 G A ERN1 Missense_Mutation p.T631M 0.15 tolerated(0.11) benign(0.092) TCGA-EB-A1NK-01 17 65916199 65916199 C T BPTF Nonsense_Mutation p.R1833* 0.28 TCGA-EB-A1NK-01 17 72518811 72518811 C T CD300LB 3'UTR 0.42 TCGA-EB-A1NK-01 17 78599568 78599568 C T RPTOR Silent p.P80P 0.46 TCGA-EB-A1NK-01 18 32398137 32398137 C T DTNA Missense_Mutation p.P240L 0.26 deleterious(0.03) possibly_damaging(0.462) TCGA-EB-A1NK-01 18 45566726 45566726 G A ZBTB7C Silent p.F251F 0.39 TCGA-EB-A1NK-01 18 51810326 51810326 C T POLI Missense_Mutation p.S337L 0.23 deleterious(0) probably_damaging(0.917) TCGA-EB-A1NK-01 19 11977098 11977098 C T ZNF439 Missense_Mutation p.L43F 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 19 16630054 16630054 A T CHERP Silent p.A889A 0.48 TCGA-EB-A1NK-01 19 18368473 18368473 G A KIAA1683 Silent p.F1207F 0.55 TCGA-EB-A1NK-01 19 22155201 22155201 G A ZNF208 Missense_Mutation p.H879Y 0.55 deleterious(0.01) unknown(0) TCGA-EB-A1NK-01 19 44778746 44778746 G A ZNF233 Missense_Mutation p.E645K 0.35 deleterious(0.02) benign(0.226) TCGA-EB-A1NK-01 19 48565258 48565258 G C PLA2G4C Missense_Mutation p.F428L 0.54 tolerated(0.28) possibly_damaging(0.519) TCGA-EB-A1NK-01 19 50189399 50189399 C G PRMT1 Missense_Mutation p.P270R 0.42 deleterious(0.02) benign(0.235) TCGA-EB-A1NK-01 19 51451995 51451995 G A KLK5 Silent p.I209I 0.52 TCGA-EB-A1NK-01 19 7670356 7670356 C T CAMSAP3 Silent p.P131P 0.63 TCGA-EB-A1NK-01 1 101190273 101190273 C T VCAM1 Missense_Mutation p.P252L 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 1 108315413 108315413 C T VAV3 Missense_Mutation p.D167N 0.40 tolerated(0.07) possibly_damaging(0.754) TCGA-EB-A1NK-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.28 tolerated(0.06) benign(0.006) TCGA-EB-A1NK-01 1 142713242 142713242 C T RP11-417J8.6 RNA 0.37 TCGA-EB-A1NK-01 1 150429989 150429989 C T RPRD2 Missense_Mutation p.R366C 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A1NK-01 1 152777800 152777800 C T LCE1C Missense_Mutation p.C52Y 0.27 deleterious_low_confidence(0) unknown(0) TCGA-EB-A1NK-01 1 156444933 156444933 G A MEF2D Missense_Mutation p.P325S 0.34 tolerated(0.87) possibly_damaging(0.632) TCGA-EB-A1NK-01 1 169511711 169511711 C T F5 Missense_Mutation p.D873N 0.32 tolerated_low_confidence(0.49) benign(0.005) TCGA-EB-A1NK-01 1 172628641 172628641 G A FASLG Silent p.G100G 0.28 TCGA-EB-A1NK-01 1 173703100 173703100 C T KLHL20 Missense_Mutation p.P91L 0.33 deleterious(0.01) benign(0.109) TCGA-EB-A1NK-01 1 196801077 196801077 G A CFHR1 Missense_Mutation p.R314Q 0.24 deleterious(0.04) probably_damaging(0.994) TCGA-EB-A1NK-01 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.37 tolerated(0.27) possibly_damaging(0.788) TCGA-EB-A1NK-01 1 210001462 210001462 A T DIEXF Missense_Mutation p.K18N 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EB-A1NK-01 1 212988571 212988571 A C TATDN3 3'UTR 0.14 TCGA-EB-A1NK-01 1 214705842 214705842 G A PTPN14 Intron 0.28 TCGA-EB-A1NK-01 1 23233280 23233281 AA - EPHB2 Frame_Shift_Del p.K657Vfs*90 0.20 TCGA-EB-A1NK-01 1 247581995 247581995 C T NLRP3 5'UTR 0.33 TCGA-EB-A1NK-01 1 34180213 34180213 C T CSMD2 Nonsense_Mutation p.W1087* 0.27 TCGA-EB-A1NK-01 1 54059973 54059973 G C GLIS1 Missense_Mutation p.D201E 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-EB-A1NK-01 1 66083654 66083654 C T LEPR Silent p.I740I 0.40 TCGA-EB-A1NK-01 1 9074860 9074860 C T SLC2A7 Silent p.R261R 0.54 TCGA-EB-A1NK-01 20 62161433 62161433 G A PTK6 Missense_Mutation p.P389L 0.28 deleterious(0) probably_damaging(0.965) TCGA-EB-A1NK-01 21 15481220 15481220 C T LIPI 3'UTR 0.29 TCGA-EB-A1NK-01 21 15561499 15561499 G A LIPI Silent p.F117F 0.41 TCGA-EB-A1NK-01 21 34617374 34617374 C T IFNAR2 Silent p.I72I 0.35 TCGA-EB-A1NK-01 21 43693533 43693533 G A ABCG1 Silent p.Q175Q 0.27 TCGA-EB-A1NK-01 21 45929254 45929254 C T TSPEAR Missense_Mutation p.D528N 0.35 deleterious(0) probably_damaging(0.997) TCGA-EB-A1NK-01 21 47548826 47548826 G A COL6A2 Intron 0.35 TCGA-EB-A1NK-01 22 21742815 21742815 C A RIMBP3B Silent p.S1556S 0.09 TCGA-EB-A1NK-01 22 38536174 38536174 G A PLA2G6 Silent p.L204L 0.33 TCGA-EB-A1NK-01 22 45312300 45312300 G A PHF21B Missense_Mutation p.P142S 0.44 tolerated_low_confidence(0.07) benign(0.343) TCGA-EB-A1NK-01 22 50187931 50187931 G A BRD1 Silent p.L704L 0.44 TCGA-EB-A1NK-01 2 103300629 103300629 G A SLC9A2 Missense_Mutation p.R420Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-EB-A1NK-01 2 118677853 118677853 G A CCDC93 3'UTR 0.39 TCGA-EB-A1NK-01 2 141356370 141356370 G A LRP1B Missense_Mutation p.P2342S 0.43 possibly_damaging(0.876) TCGA-EB-A1NK-01 2 158272120 158272120 C T CYTIP 3'UTR 0.28 TCGA-EB-A1NK-01 2 179467243 179467243 G A TTN Missense_Mutation p.P18296S 0.32 TCGA-EB-A1NK-01 2 179597628 179597628 C T TTN Silent p.G5425G 0.22 TCGA-EB-A1NK-01 2 196664189 196664189 G A DNAH7 Missense_Mutation p.P3395L 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-EB-A1NK-01 2 201997749 201997749 C T CFLAR Intron 0.08 TCGA-EB-A1NK-01 2 220072749 220072749 C T ZFAND2B Silent p.T141T 0.27 TCGA-EB-A1NK-01 2 27997313 27997313 A - MRPL33 Frame_Shift_Del p.S22Afs*20 0.18 TCGA-EB-A1NK-01 2 31606641 31606641 G A XDH Missense_Mutation p.S289L 0.36 tolerated(0.54) benign(0.005) TCGA-EB-A1NK-01 2 74594835 74594835 G A DCTN1 Silent p.I724I 0.34 TCGA-EB-A1NK-01 2 84806744 84806744 C T DNAH6 Missense_Mutation p.P724S 0.31 deleterious(0.01) possibly_damaging(0.814) TCGA-EB-A1NK-01 3 109027921 109027921 G A DPPA2 Silent p.I116I 0.32 TCGA-EB-A1NK-01 3 113286510 113286510 T G SIDT1 Silent p.G156G 0.25 TCGA-EB-A1NK-01 3 121340500 121340500 C T FBXO40 Missense_Mutation p.S75F 0.19 tolerated(0.26) benign(0.019) TCGA-EB-A1NK-01 3 121363721 121363721 C G HCLS1 Missense_Mutation p.D115H 0.36 deleterious(0) probably_damaging(0.961) TCGA-EB-A1NK-01 3 121363722 121363722 C T HCLS1 Silent p.T114T 0.36 TCGA-EB-A1NK-01 3 14564565 14564565 C T GRIP2 RNA 0.38 TCGA-EB-A1NK-01 3 164710143 164710143 G A SI Silent p.F1628F 0.19 TCGA-EB-A1NK-01 3 52526404 52526404 C T NISCH Missense_Mutation p.P1474L 0.33 deleterious(0) probably_damaging(0.981) TCGA-EB-A1NK-01 3 54596844 54596844 G A CACNA2D3 Missense_Mutation p.G188R 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A1NK-01 3 62063933 62063934 - A PTPRG Splice_Site p.X205_splice 0.22 TCGA-EB-A1NK-01 4 121742401 121742401 C T PRDM5 Missense_Mutation p.E134K 0.26 deleterious(0.03) benign(0.092) TCGA-EB-A1NK-01 4 138442323 138442323 C T PCDH18 Missense_Mutation p.E1090K 0.34 tolerated(0.07) probably_damaging(0.997) TCGA-EB-A1NK-01 4 164394478 164394478 C T TKTL2 Missense_Mutation p.A137T 0.26 deleterious(0) probably_damaging(0.975) TCGA-EB-A1NK-01 4 189064906 189064906 G C TRIML1 Intron 0.12 TCGA-EB-A1NK-01 4 189065256 189065256 G A TRIML1 Silent p.T275T 0.34 TCGA-EB-A1NK-01 4 70709918 70709918 C T SULT1E1 Missense_Mutation p.E245K 0.27 tolerated(0.47) benign(0.005) TCGA-EB-A1NK-01 4 90856667 90856667 G A MMRN1 Silent p.E612E 0.36 TCGA-EB-A1NK-01 5 118506200 118506202 CTC - DMXL1 In_Frame_Del p.P1906del 0.32 TCGA-EB-A1NK-01 5 13871029 13871029 A C DNAH5 Missense_Mutation p.S1227R 0.23 benign(0.307) TCGA-EB-A1NK-01 5 143495 143495 G A PLEKHG4B Missense_Mutation p.G207E 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 5 145439748 145439748 C T SH3RF2 Silent p.I625I 0.25 TCGA-EB-A1NK-01 5 147695303 147695303 C T SPINK7 3'UTR 0.42 TCGA-EB-A1NK-01 5 178409926 178409926 G A GRM6 Silent p.A807A 0.36 TCGA-EB-A1NK-01 5 179994990 179994990 G A CNOT6 Silent p.S338S 0.34 TCGA-EB-A1NK-01 5 65473474 65473474 T C SREK1 Silent p.S571S 0.40 TCGA-EB-A1NK-01 5 83362376 83362376 G A EDIL3 Missense_Mutation p.A234V 0.36 deleterious(0) probably_damaging(0.983) TCGA-EB-A1NK-01 6 116879360 116879360 G A FAM26D Missense_Mutation p.E168K 0.19 deleterious(0.01) possibly_damaging(0.574) TCGA-EB-A1NK-01 6 12163623 12163623 G A HIVEP1 Silent p.K2362K 0.32 TCGA-EB-A1NK-01 6 142397026 142397026 A G NMBR Missense_Mutation p.V311A 0.31 tolerated(0.17) possibly_damaging(0.737) TCGA-EB-A1NK-01 6 158923932 158923932 C T TULP4 Silent p.D1079D 0.24 TCGA-EB-A1NK-01 6 160638400 160638400 G A SLC22A2 3'UTR 0.64 TCGA-EB-A1NK-01 6 161026196 161026196 C T LPA Missense_Mutation p.G943R 0.29 deleterious(0) probably_damaging(0.987) TCGA-EB-A1NK-01 6 165715219 165715219 G A C6orf118 Missense_Mutation p.R198W 0.09 deleterious(0) possibly_damaging(0.784) TCGA-EB-A1NK-01 6 27216928 27216928 G A PRSS16 Silent p.L129L 0.33 TCGA-EB-A1NK-01 6 29395290 29395290 C T OR11A1 Silent p.G43G 0.27 TCGA-EB-A1NK-01 6 31838420 31838420 G A SLC44A4 Missense_Mutation p.R333W 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 6 3850386 3850386 A G FAM50B Missense_Mutation p.K114R 0.11 tolerated(0.15) benign(0.068) TCGA-EB-A1NK-01 6 46826199 46826199 C T GPR116 Silent p.L1147L 0.35 TCGA-EB-A1NK-01 6 84269854 84269854 G A SNAP91 Missense_Mutation p.P867L 0.25 deleterious(0) probably_damaging(0.991) TCGA-EB-A1NK-01 6 94124440 94124440 A G EPHA7 Missense_Mutation p.I48T 0.31 tolerated(1) benign(0.02) TCGA-EB-A1NK-01 7 113558309 113558309 G A PPP1R3A Missense_Mutation p.P248L 0.38 tolerated(0.05) benign(0.439) TCGA-EB-A1NK-01 7 131817824 131817824 C T PLXNA4 Missense_Mutation p.G1858D 0.29 tolerated(0.56) probably_damaging(0.909) TCGA-EB-A1NK-01 7 134363713 134363713 A G BPGM Missense_Mutation p.D237G 0.28 deleterious(0.01) benign(0.198) TCGA-EB-A1NK-01 7 138545930 138545930 C T KIAA1549 Nonsense_Mutation p.W1734* 0.48 TCGA-EB-A1NK-01 7 143140725 143140725 T G TAS2R60 Silent p.V60V 0.42 TCGA-EB-A1NK-01 7 17379647 17379647 C T AHR Missense_Mutation p.S733F 0.34 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-EB-A1NK-01 7 27203108 27203108 G A HOXA9 3'UTR 0.31 TCGA-EB-A1NK-01 7 2979560 2979560 G A CARD11 Silent p.I229I 0.46 TCGA-EB-A1NK-01 7 31887623 31887623 C A PDE1C Missense_Mutation p.E373D 0.35 tolerated(0.39) benign(0.174) TCGA-EB-A1NK-01 7 41740029 41740029 C G INHBA 5'UTR 0.41 TCGA-EB-A1NK-01 7 82546012 82546012 G A PCLO Nonsense_Mutation p.Q3764* 0.39 TCGA-EB-A1NK-01 8 10555406 10555406 C T C8orf74 Missense_Mutation p.A180V 0.55 deleterious(0.01) benign(0.164) TCGA-EB-A1NK-01 8 121357691 121357691 C T COL14A1 Missense_Mutation p.P1656S 0.24 deleterious(0.02) probably_damaging(1) TCGA-EB-A1NK-01 8 124349897 124349897 G A ATAD2 Nonsense_Mutation p.R1007* 0.26 TCGA-EB-A1NK-01 8 30209756 30209756 C G TUBBP1 RNA 0.50 TCGA-EB-A1NK-01 8 32453417 32453417 G A NRG1 Missense_Mutation p.E58K 0.56 deleterious(0) benign(0.127) TCGA-EB-A1NK-01 8 36673164 36673164 G A KCNU1 Silent p.K318K 0.50 TCGA-EB-A1NK-01 8 55370930 55370930 T C SOX17 Missense_Mutation p.W78R 0.16 deleterious(0) probably_damaging(0.992) TCGA-EB-A1NK-01 8 55538676 55538676 C T RP1 Missense_Mutation p.S745F 0.30 deleterious(0) possibly_damaging(0.794) TCGA-EB-A1NK-01 8 62289219 62289219 G A CLVS1 Missense_Mutation p.E171K 0.44 deleterious(0) possibly_damaging(0.845) TCGA-EB-A1NK-01 8 76452231 76452231 G A HNF4G Missense_Mutation p.D2N 0.51 deleterious_low_confidence(0.01) benign(0.008) TCGA-EB-A1NK-01 8 92301455 92301455 G A SLC26A7 Missense_Mutation p.M95I 0.28 deleterious(0.01) possibly_damaging(0.512) TCGA-EB-A1NK-01 9 131186760 131186760 C A CERCAM Silent p.P211P 0.26 TCGA-EB-A1NK-01 9 131761586 131761586 G A NUP188 Silent p.K1217K 0.11 TCGA-EB-A1NK-01 9 140972591 140972591 G A CACNA1B Missense_Mutation p.E1659K 0.36 deleterious(0) possibly_damaging(0.766) TCGA-EB-A1NK-01 9 20716140 20716140 G A FOCAD Intron 0.33 TCGA-EB-A1NK-01 9 26995832 26995832 C T LRRC19 Missense_Mutation p.G267E 0.29 deleterious(0) probably_damaging(0.995) TCGA-EB-A1NK-01 9 35714009 35714009 G A TLN1 Silent p.L1064L 0.36 TCGA-EB-A1NK-01 9 37541670 37541670 G A FBXO10 Silent p.A32A 0.22 TCGA-EB-A1NK-01 9 5922526 5922526 G A KIAA2026 Missense_Mutation p.P1157L 0.22 tolerated(0.1) benign(0.004) TCGA-EB-A1NK-01 9 5922527 5922527 G T KIAA2026 Missense_Mutation p.P1157T 0.22 tolerated(0.61) benign(0) TCGA-EB-A1NK-01 9 93650807 93650807 G A SYK Missense_Mutation p.G578E 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 X 104464200 104464200 G A TEX13A Missense_Mutation p.P226S 0.58 tolerated_low_confidence(0.72) possibly_damaging(0.857) TCGA-EB-A1NK-01 X 105142685 105142685 C T NRK Missense_Mutation p.P230L 0.78 deleterious(0) possibly_damaging(0.768) TCGA-EB-A1NK-01 X 35993478 35993478 G A CXorf22 Nonsense_Mutation p.W823* 0.61 TCGA-EB-A1NK-01 X 44109653 44109653 G A EFHC2 Silent p.S215S 0.71 TCGA-EB-A1NK-01 X 71870282 71870282 G A PHKA1 Missense_Mutation p.R428C 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A1NK-01 X 78216875 78216875 C T P2RY10 Silent p.F286F 0.67 TCGA-EB-A24C-01 11 117329513 117329513 G A DSCAML1 Silent p.D1235D 0.32 TCGA-EB-A24C-01 11 18332943 18332943 A G HPS5 Missense_Mutation p.V92A 0.16 deleterious(0.02) benign(0.041) TCGA-EB-A24C-01 11 95504679 95504679 T C FAM76B 3'UTR 0.19 TCGA-EB-A24C-01 12 58151945 58151945 C T MARCH9 Silent p.L190L 0.30 TCGA-EB-A24C-01 12 6619925 6619925 T G NCAPD2 Missense_Mutation p.F131L 0.26 tolerated(0.2) possibly_damaging(0.717) TCGA-EB-A24C-01 14 102028063 102028063 G T DIO3 Missense_Mutation p.R77L 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-EB-A24C-01 14 20612115 20612115 C T OR4N5 Missense_Mutation p.S74F 0.42 deleterious(0) possibly_damaging(0.895) TCGA-EB-A24C-01 14 21559287 21559287 T C ZNF219 Missense_Mutation p.Y526C 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A24C-01 16 11000359 11000359 C T CIITA Missense_Mutation p.P337L 0.36 tolerated(0.26) benign(0.002) TCGA-EB-A24C-01 19 17337903 17337903 T C OCEL1 Missense_Mutation p.F116S 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A24C-01 19 7675775 7675775 G A CAMSAP3 Missense_Mutation p.R363Q 0.25 tolerated(0.66) benign(0.009) TCGA-EB-A24C-01 19 8670007 8670007 G A ADAMTS10 Missense_Mutation p.R109W 0.11 deleterious(0) probably_damaging(0.989) TCGA-EB-A24C-01 1 12520332 12520332 C T VPS13D Silent p.F4181F 0.83 TCGA-EB-A24C-01 1 207304923 207304923 G A C4BPA Missense_Mutation p.A308T 0.45 deleterious(0.03) probably_damaging(0.977) TCGA-EB-A24C-01 1 98058935 98058935 C T DPYD Missense_Mutation p.A323T 0.33 tolerated(0.14) benign(0.016) TCGA-EB-A24C-01 20 17595518 17595518 A T RRBP1 Missense_Mutation p.L920Q 0.20 deleterious(0) possibly_damaging(0.883) TCGA-EB-A24C-01 20 31811717 31811717 G T BPIFA3 Silent p.L76L 0.20 TCGA-EB-A24C-01 21 42540500 42540500 A C BACE2 Missense_Mutation p.K104Q 0.62 tolerated(0.09) benign(0.012) TCGA-EB-A24C-01 2 99909082 99909082 C A LYG1 Missense_Mutation p.W22L 0.45 deleterious(0.05) possibly_damaging(0.849) TCGA-EB-A24C-01 3 15116176 15116176 G A ZFYVE20 Missense_Mutation p.R490W 0.31 deleterious(0) probably_damaging(0.978) TCGA-EB-A24C-01 3 164907292 164907292 G A SLITRK3 Missense_Mutation p.R443C 0.79 deleterious(0) probably_damaging(0.976) TCGA-EB-A24C-01 5 139219689 139219689 C T PSD2 Silent p.V682V 0.28 TCGA-EB-A24C-01 6 33990556 33990556 G T GRM4 3'UTR 0.59 TCGA-EB-A24C-01 6 39874786 39874786 C T MOCS1 3'UTR 0.21 TCGA-EB-A24C-01 6 44224482 44224482 A C SLC35B2 Missense_Mutation p.F49V 0.42 tolerated(0.53) benign(0) TCGA-EB-A24C-01 6 5771581 5771581 G T FARS2 Silent p.L425L 0.45 TCGA-EB-A24C-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EB-A24C-01 7 146825823 146825823 C G CNTNAP2 Missense_Mutation p.S326R 0.17 tolerated(0.59) benign(0.038) TCGA-EB-A24C-01 7 22766992 22766992 C T IL6 Intron 0.30 TCGA-EB-A24C-01 8 11400840 11400840 C T BLK Missense_Mutation p.P36L 0.33 deleterious(0.02) possibly_damaging(0.47) TCGA-EB-A24C-01 9 125281593 125281593 C A OR1J4 Silent p.P58P 0.30 TCGA-EB-A24C-01 9 139751928 139751929 - A MAMDC4 Frame_Shift_Ins p.D740Rfs*33 0.19 TCGA-EB-A24C-01 9 95279998 95279998 C T ECM2 Missense_Mutation p.G151E 0.53 deleterious(0.02) possibly_damaging(0.697) TCGA-EB-A24C-01 X 102564760 102564760 G A BEX2 Missense_Mutation p.P81S 0.25 tolerated(0.09) possibly_damaging(0.857) TCGA-EB-A24C-01 X 139866322 139866322 C T CDR1 Silent p.S70S 0.83 TCGA-EB-A24C-01 X 3228915 3228915 G A MXRA5 Silent p.N2443N 0.79 TCGA-EB-A24D-01 10 101578963 101578963 G A ABCC2 Missense_Mutation p.G853R 0.81 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A24D-01 10 104264003 104264003 C T SUFU Missense_Mutation p.P32S 0.67 tolerated(0.14) benign(0.033) TCGA-EB-A24D-01 10 112356234 112356234 A T SMC3 Missense_Mutation p.D681V 0.84 tolerated(0.28) benign(0.028) TCGA-EB-A24D-01 10 118101634 118101634 G A CCDC172 Silent p.K123K 0.81 TCGA-EB-A24D-01 10 12200002 12200002 C T SEC61A2 Silent p.I291I 0.83 TCGA-EB-A24D-01 10 125601889 125601889 G A CPXM2 Missense_Mutation p.T210I 0.80 deleterious(0.01) probably_damaging(0.953) TCGA-EB-A24D-01 10 129913965 129913965 G A MKI67 Missense_Mutation p.P236L 0.79 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 10 135440205 135440205 G A FRG2B Silent p.S14S 0.12 TCGA-EB-A24D-01 10 28229609 28229609 C T ARMC4 Silent p.T623T 0.80 TCGA-EB-A24D-01 10 28409268 28409268 G A MPP7 Missense_Mutation p.P248S 0.43 deleterious(0) probably_damaging(0.975) TCGA-EB-A24D-01 10 33559629 33559629 G A NRP1 Missense_Mutation p.S135F 0.71 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 10 38344475 38344475 G T ZNF33A Missense_Mutation p.G475W 0.77 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 10 44111922 44111922 C T ZNF485 Missense_Mutation p.S144F 0.70 tolerated(0.39) probably_damaging(0.944) TCGA-EB-A24D-01 10 50121774 50121774 G A LRRC18 Silent p.L143L 0.50 TCGA-EB-A24D-01 10 63851157 63851157 C T ARID5B Silent p.T645T 0.73 TCGA-EB-A24D-01 10 63852296 63852296 G A ARID5B Missense_Mutation p.G1025E 0.73 tolerated(1) possibly_damaging(0.602) TCGA-EB-A24D-01 10 97443273 97443273 G A TCTN3 Intron 0.81 TCGA-EB-A24D-01 10 99023380 99023380 C G ARHGAP19 Missense_Mutation p.R137P 0.68 tolerated(0.12) possibly_damaging(0.463) TCGA-EB-A24D-01 11 107686587 107686587 G T SLC35F2 Missense_Mutation p.P72H 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 11 113220815 113220815 C T TTC12 Missense_Mutation p.S392L 0.25 tolerated(0.4) benign(0.009) TCGA-EB-A24D-01 11 117389342 117389342 C T DSCAML1 Missense_Mutation p.R510Q 0.29 tolerated(0.36) possibly_damaging(0.8) TCGA-EB-A24D-01 11 118828856 118828856 G A UPK2 Missense_Mutation p.M156I 0.67 deleterious(0) probably_damaging(0.989) TCGA-EB-A24D-01 11 118828857 118828857 G A UPK2 Missense_Mutation p.V157M 0.69 tolerated(0.07) probably_damaging(0.98) TCGA-EB-A24D-01 11 118960442 118960442 C T HMBS Missense_Mutation p.P106S 0.79 tolerated(0.41) benign(0.117) TCGA-EB-A24D-01 11 118960443 118960443 C T HMBS Missense_Mutation p.P106L 0.79 tolerated(0.12) possibly_damaging(0.589) TCGA-EB-A24D-01 11 122775096 122775096 A T C11orf63 Missense_Mutation p.T270S 0.76 tolerated(0.12) benign(0.135) TCGA-EB-A24D-01 11 123624842 123624842 G A OR6X1 Missense_Mutation p.H129Y 0.78 deleterious(0) benign(0.074) TCGA-EB-A24D-01 11 123988472 123988472 C T VWA5A Missense_Mutation p.P46S 0.81 deleterious(0.04) possibly_damaging(0.855) TCGA-EB-A24D-01 11 124266884 124266884 G A OR8B3 Missense_Mutation p.R122C 0.82 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EB-A24D-01 11 125864781 125864781 G A CDON Silent p.I843I 0.59 TCGA-EB-A24D-01 11 128680668 128680668 C T FLI1 Missense_Mutation p.P382S 0.67 tolerated(0.13) benign(0.017) TCGA-EB-A24D-01 11 129814858 129814858 G A PRDM10 Silent p.G190G 0.87 TCGA-EB-A24D-01 11 381813 381813 C T B4GALNT4 3'UTR 0.90 TCGA-EB-A24D-01 11 45939015 45939015 C A PEX16 Nonsense_Mutation p.E48* 0.80 TCGA-EB-A24D-01 11 46726422 46726422 G T ZNF408 Missense_Mutation p.S391I 0.84 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 11 5080256 5080256 C T OR52E2 Missense_Mutation p.G201D 0.79 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A24D-01 11 56949896 56949896 C T LRRC55 Nonsense_Mutation p.Q177* 0.80 TCGA-EB-A24D-01 11 60230551 60230551 C T MS4A1 Missense_Mutation p.P79L 0.73 deleterious(0.04) probably_damaging(0.995) TCGA-EB-A24D-01 11 62752150 62752150 C T SLC22A6 Missense_Mutation p.D5N 0.73 deleterious(0.02) probably_damaging(0.968) TCGA-EB-A24D-01 11 63177380 63177380 A G SLC22A9 3'UTR 0.82 TCGA-EB-A24D-01 11 64074719 64074719 C T ESRRA Missense_Mutation p.P23L 0.70 tolerated(0.09) benign(0.002) TCGA-EB-A24D-01 11 65088607 65088607 G A CDC42EP2 Missense_Mutation p.D80N 0.62 tolerated(0.42) benign(0.001) TCGA-EB-A24D-01 11 66299150 66299150 C T BBS1 Silent p.L544L 0.42 TCGA-EB-A24D-01 11 674772 674772 G A DEAF1 Silent p.L423L 0.77 TCGA-EB-A24D-01 11 67816651 67816651 C T TCIRG1 Silent p.L593L 0.87 TCGA-EB-A24D-01 11 68153788 68153788 C T LRP5 Silent p.A340A 0.71 TCGA-EB-A24D-01 11 6942547 6942547 G A OR2D3 Silent p.R105R 0.77 TCGA-EB-A24D-01 11 70331960 70331960 G A SHANK2 Missense_Mutation p.P1481S 0.77 tolerated(0.05) possibly_damaging(0.641) TCGA-EB-A24D-01 11 74876892 74876892 C T SLCO2B1 Nonsense_Mutation p.R116* 0.78 TCGA-EB-A24D-01 11 76909646 76909646 C T MYO7A Silent p.I1516I 0.75 TCGA-EB-A24D-01 11 82972843 82972843 C T CCDC90B 3'UTR 0.82 TCGA-EB-A24D-01 11 85436419 85436419 G A SYTL2 Missense_Mutation p.P361S 0.79 tolerated(0.26) benign(0.039) TCGA-EB-A24D-01 11 88241888 88241888 C T GRM5 Missense_Mutation p.D1171N 0.89 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A24D-01 11 89531552 89531552 C T TRIM49 Missense_Mutation p.E369K 0.66 tolerated(0.26) benign(0.044) TCGA-EB-A24D-01 11 92624019 92624019 G A FAT3 Missense_Mutation p.D4504N 0.80 benign(0) TCGA-EB-A24D-01 12 100219129 100219129 G A ANKS1B Missense_Mutation p.S58L 0.65 deleterious(0) benign(0.255) TCGA-EB-A24D-01 12 104388185 104388185 A G GLT8D2 Missense_Mutation p.V232A 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 12 10772634 10772634 C T STYK1 3'UTR 0.58 TCGA-EB-A24D-01 12 108932790 108932790 G A SART3 Missense_Mutation p.R328C 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 12 109660625 109660625 C T ACACB Missense_Mutation p.P1234S 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A24D-01 12 117696239 117696239 C T NOS1 Missense_Mutation p.E832K 0.37 tolerated(0.14) probably_damaging(0.928) TCGA-EB-A24D-01 12 122218683 122218683 C T TMEM120B 3'UTR 0.55 TCGA-EB-A24D-01 12 12251997 12251997 G A BCL2L14 3'UTR 0.59 TCGA-EB-A24D-01 12 122773082 122773082 C T CLIP1 Missense_Mutation p.E1201K 0.32 tolerated(0.28) probably_damaging(0.977) TCGA-EB-A24D-01 12 124285934 124285934 C T DNAH10 Nonsense_Mutation p.R739* 0.28 TCGA-EB-A24D-01 12 132325220 132325220 C T MMP17 Silent p.F175F 0.23 TCGA-EB-A24D-01 12 132325221 132325221 C T MMP17 Missense_Mutation p.H176Y 0.22 deleterious(0.05) probably_damaging(0.994) TCGA-EB-A24D-01 12 13906626 13906626 C T GRIN2B Missense_Mutation p.G212E 0.52 tolerated(0.1) possibly_damaging(0.661) TCGA-EB-A24D-01 12 21967600 21967600 G A ABCC9 Silent p.F1360F 0.21 TCGA-EB-A24D-01 12 24736653 24736653 G A LINC00477 RNA 0.49 TCGA-EB-A24D-01 12 31247686 31247686 C T DDX11 Intron 0.65 TCGA-EB-A24D-01 12 45105169 45105169 G A NELL2 Silent p.T415T 0.43 TCGA-EB-A24D-01 12 46230632 46230632 G A ARID2 Missense_Mutation p.R294K 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A24D-01 12 47471693 47471693 C T AMIGO2 Missense_Mutation p.A365T 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 12 49428682 49428682 G A KMT2D Missense_Mutation p.P3423L 0.13 probably_damaging(0.991) TCGA-EB-A24D-01 12 49442492 49442494 GCA AC KMT2D Frame_Shift_Del p.M1360Sfs*16 0.15 TCGA-EB-A24D-01 12 5021551 5021551 G A KCNA1 Missense_Mutation p.G336E 0.27 deleterious(0) probably_damaging(0.994) TCGA-EB-A24D-01 12 51461553 51461553 C A CSRNP2 Missense_Mutation p.R204L 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-EB-A24D-01 12 51589948 51589948 T C POU6F1 Silent p.G18G 0.62 TCGA-EB-A24D-01 12 52163097 52163097 C T SCN8A Missense_Mutation p.S1117L 0.36 deleterious(0.02) possibly_damaging(0.597) TCGA-EB-A24D-01 12 52788947 52788947 C T KRT82 Missense_Mutation p.E452K 0.31 tolerated(0.42) benign(0.013) TCGA-EB-A24D-01 12 52940176 52940176 C T KRT71 Missense_Mutation p.E407K 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A24D-01 12 53170566 53170566 C T KRT76 Silent p.V170V 0.15 TCGA-EB-A24D-01 12 53294408 53294408 G A KRT8 Silent p.T246T 0.36 TCGA-EB-A24D-01 12 53421881 53421881 C T EIF4B Silent p.D296D 0.58 TCGA-EB-A24D-01 12 53449591 53449591 C T TENC1 Silent p.I251I 0.58 TCGA-EB-A24D-01 12 54427019 54427019 A T HOXC5 Missense_Mutation p.Y38F 0.51 deleterious(0.02) possibly_damaging(0.739) TCGA-EB-A24D-01 12 55248394 55248394 T C MUCL1 Silent p.L10L 0.21 TCGA-EB-A24D-01 12 55714842 55714842 C T OR6C1 Silent p.I153I 0.53 TCGA-EB-A24D-01 12 56561944 56561944 G A SMARCC2 Missense_Mutation p.S886F 0.46 deleterious(0) possibly_damaging(0.485) TCGA-EB-A24D-01 12 56568535 56568535 G A SMARCC2 Nonsense_Mutation p.R466* 0.58 TCGA-EB-A24D-01 12 56629484 56629484 A T SLC39A5 Silent p.P315P 0.48 TCGA-EB-A24D-01 12 57662112 57662112 G A R3HDM2 Silent p.I654I 0.27 TCGA-EB-A24D-01 12 58174169 58174169 C T METTL21B Missense_Mutation p.P141S 0.31 tolerated(0.08) benign(0.235) TCGA-EB-A24D-01 12 58203401 58203401 C T AVIL Silent p.Q306Q 0.24 TCGA-EB-A24D-01 12 5941659 5941659 C T ANO2 Missense_Mutation p.M244I 0.51 tolerated(0.26) benign(0.106) TCGA-EB-A24D-01 12 5963294 5963294 C T ANO2 Missense_Mutation p.G179E 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 12 64377717 64377717 C T SRGAP1 Intron 0.29 TCGA-EB-A24D-01 12 68724898 68724898 G A MDM1 Missense_Mutation p.S41L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 12 6887035 6887035 C T LAG3 Missense_Mutation p.S460F 0.24 tolerated(0.82) benign(0) TCGA-EB-A24D-01 12 7045212 7045212 C T ATN1 Missense_Mutation p.S261L 0.18 benign(0.009) TCGA-EB-A24D-01 12 71002959 71002959 C T PTPRB Missense_Mutation p.R290Q 0.34 tolerated_low_confidence(0.88) benign(0.002) TCGA-EB-A24D-01 12 72013120 72013120 T C ZFC3H1 Missense_Mutation p.K1707E 0.26 tolerated(1) benign(0.003) TCGA-EB-A24D-01 12 7596704 7596704 G A CD163L1 Missense_Mutation p.S7L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.602) TCGA-EB-A24D-01 12 76749802 76749802 C T OSBPL8 Splice_Site p.X846_splice 0.28 TCGA-EB-A24D-01 12 7848116 7848116 A G GDF3 Missense_Mutation p.L70S 0.24 tolerated(0.6) possibly_damaging(0.9) TCGA-EB-A24D-01 12 7972128 7972128 C T SLC2A14 Missense_Mutation p.G364R 0.45 deleterious(0.04) possibly_damaging(0.659) TCGA-EB-A24D-01 12 80729888 80729888 G A OTOGL Missense_Mutation p.S1514N 0.59 tolerated(0.1) benign(0.004) TCGA-EB-A24D-01 12 81111198 81111198 C T MYF5 Missense_Mutation p.P119L 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 12 81536990 81536990 T C ACSS3 Silent p.Y295Y 0.16 TCGA-EB-A24D-01 12 81568698 81568698 G A ACSS3 Silent p.G410G 0.25 TCGA-EB-A24D-01 12 85432060 85432060 G A LRRIQ1 Missense_Mutation p.E36K 0.20 deleterious(0.02) possibly_damaging(0.804) TCGA-EB-A24D-01 12 88486551 88486551 G A CEP290 Missense_Mutation p.A1123V 0.22 possibly_damaging(0.886) TCGA-EB-A24D-01 12 8982345 8982345 G A A2ML1 Missense_Mutation p.M144I 0.25 deleterious(0) benign(0.01) TCGA-EB-A24D-01 12 8982346 8982346 G A A2ML1 Missense_Mutation p.D145N 0.25 tolerated(0.92) benign(0.03) TCGA-EB-A24D-01 12 9232411 9232411 C T A2M Missense_Mutation p.G952E 0.67 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 12 95486565 95486565 C T FGD6 Nonsense_Mutation p.W1219* 0.29 TCGA-EB-A24D-01 13 23929489 23929489 C T SACS Missense_Mutation p.G421E 0.31 probably_damaging(0.998) TCGA-EB-A24D-01 13 23939335 23939335 G A SACS Missense_Mutation p.L143F 0.41 probably_damaging(0.993) TCGA-EB-A24D-01 13 33635153 33635153 G A KL Missense_Mutation p.G646E 0.37 tolerated(0.1) possibly_damaging(0.739) TCGA-EB-A24D-01 13 42877958 42877958 C T AKAP11 Silent p.T1692T 0.20 TCGA-EB-A24D-01 13 84455231 84455231 C T SLITRK1 Missense_Mutation p.D138N 0.52 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 13 86370073 86370073 G A SLITRK6 Missense_Mutation p.R191C 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 13 96238390 96238390 C T DZIP1 Missense_Mutation p.G740E 0.32 deleterious(0.02) benign(0.132) TCGA-EB-A24D-01 14 101493473 101493473 C T MIR329-2 RNA 0.40 TCGA-EB-A24D-01 14 103805576 103805576 A G EIF5 Missense_Mutation p.D271G 0.37 deleterious(0) possibly_damaging(0.803) TCGA-EB-A24D-01 14 105419565 105419565 C T AHNAK2 Silent p.V741V 0.45 TCGA-EB-A24D-01 14 105944790 105944790 G C CRIP2 Missense_Mutation p.D122H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 14 106994098 106994098 G T IGHV3-48 Missense_Mutation p.L23M 0.31 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-EB-A24D-01 14 19562086 19562086 G A POTEG Silent p.L301L 0.35 TCGA-EB-A24D-01 14 20248994 20248994 C T OR4M1 Silent p.P171P 0.18 TCGA-EB-A24D-01 14 20345373 20345373 T A OR4K2 3'UTR 0.42 TCGA-EB-A24D-01 14 20528236 20528236 G A OR4L1 Silent p.E11E 0.28 TCGA-EB-A24D-01 14 22102916 22102916 C T OR10G2 Missense_Mutation p.R28K 0.48 tolerated(0.19) benign(0.005) TCGA-EB-A24D-01 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.44 deleterious(0.04) benign(0.202) TCGA-EB-A24D-01 14 22447109 22447109 C T TRAV8-6 Silent p.V30V 0.38 TCGA-EB-A24D-01 14 23006596 23006596 G A TRAJ7 Missense_Mutation p.G11E 0.21 unknown(0) TCGA-EB-A24D-01 14 23006597 23006597 G A TRAJ7 Silent p.G11G 0.20 TCGA-EB-A24D-01 14 24877078 24877078 T A NYNRIN Missense_Mutation p.Y68N 0.21 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-EB-A24D-01 14 24884150 24884150 G A NYNRIN Silent p.L1065L 0.38 TCGA-EB-A24D-01 14 24884151 24884151 G A NYNRIN Missense_Mutation p.G1066S 0.38 deleterious(0) possibly_damaging(0.543) TCGA-EB-A24D-01 14 52179241 52179241 G A FRMD6 Nonsense_Mutation p.W274* 0.22 TCGA-EB-A24D-01 14 52179242 52179242 G A FRMD6 Nonsense_Mutation p.W274* 0.22 TCGA-EB-A24D-01 14 52957711 52957711 C T TXNDC16 Missense_Mutation p.E257K 0.45 tolerated(0.05) benign(0.033) TCGA-EB-A24D-01 14 65262067 65262067 C T SPTB Missense_Mutation p.M544I 0.22 tolerated(0.09) benign(0.053) TCGA-EB-A24D-01 14 70515464 70515464 C T SLC8A3 Intron 0.50 TCGA-EB-A24D-01 14 71204984 71204984 C T MAP3K9 Missense_Mutation p.E608K 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-EB-A24D-01 14 71204985 71204985 C T MAP3K9 Silent p.K607K 0.36 TCGA-EB-A24D-01 14 72205735 72205735 G A SIPA1L1 Missense_Mutation p.E1758K 0.35 deleterious(0) possibly_damaging(0.708) TCGA-EB-A24D-01 14 74824974 74824974 G A VRTN Silent p.E496E 0.39 TCGA-EB-A24D-01 14 74951183 74951183 G A NPC2 Missense_Mutation p.P100S 0.32 deleterious(0) probably_damaging(0.996) TCGA-EB-A24D-01 14 76928933 76928933 C T ESRRB Missense_Mutation p.T148I 0.50 deleterious(0) probably_damaging(0.977) TCGA-EB-A24D-01 14 77272779 77272779 G A ANGEL1 Missense_Mutation p.H454Y 0.24 tolerated(0.09) possibly_damaging(0.633) TCGA-EB-A24D-01 14 77580243 77580243 C T CIPC Missense_Mutation p.S261F 0.33 tolerated(0.06) possibly_damaging(0.794) TCGA-EB-A24D-01 14 77846786 77846786 C T SAMD15 Missense_Mutation p.L584F 0.50 deleterious(0) probably_damaging(0.993) TCGA-EB-A24D-01 14 81528557 81528557 C T TSHR Missense_Mutation p.S79F 0.34 tolerated(0.26) probably_damaging(0.999) TCGA-EB-A24D-01 14 81743687 81743687 G A STON2 Silent p.F656F 0.18 TCGA-EB-A24D-01 14 91124667 91124667 G A TTC7B Missense_Mutation p.S406F 0.38 deleterious(0) possibly_damaging(0.794) TCGA-EB-A24D-01 15 102291841 102291841 C T DNM1P47 RNA 0.31 TCGA-EB-A24D-01 15 25226985 25226985 C T SNRPN 3'Flank 0.21 TCGA-EB-A24D-01 15 27572117 27572117 C T GABRG3 Silent p.I144I 0.56 TCGA-EB-A24D-01 15 41146000 41146000 C T SPINT1 Silent p.F278F 0.33 TCGA-EB-A24D-01 15 41795237 41795237 C T ITPKA Missense_Mutation p.T420I 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 15 42138519 42138519 C T PLA2G4B Silent p.F804F 0.57 TCGA-EB-A24D-01 15 42442637 42442637 C T PLA2G4F Silent p.E273E 0.65 TCGA-EB-A24D-01 15 43045198 43045198 T C TTBK2 Missense_Mutation p.N749S 0.32 tolerated_low_confidence(0.41) benign(0.003) TCGA-EB-A24D-01 15 43507467 43507467 C T EPB42 Missense_Mutation p.D116N 0.31 tolerated(0.16) benign(0.113) TCGA-EB-A24D-01 15 45391942 45391942 C T DUOX2 Silent p.E1111E 0.21 TCGA-EB-A24D-01 15 51792261 51792261 T G DMXL2 Missense_Mutation p.M1054L 0.23 tolerated(1) benign(0.004) TCGA-EB-A24D-01 15 59911631 59911631 G A GCNT3 Silent p.L398L 0.21 TCGA-EB-A24D-01 15 63047816 63047816 C T TLN2 Missense_Mutation p.P1521L 0.49 deleterious(0.02) possibly_damaging(0.562) TCGA-EB-A24D-01 15 64429884 64429884 G A SNX1 Intron 0.25 TCGA-EB-A24D-01 15 64915245 64915245 G A ZNF609 Missense_Mutation p.E323K 0.19 deleterious(0) possibly_damaging(0.87) TCGA-EB-A24D-01 15 65112147 65112147 G A PIF1 Missense_Mutation p.A411V 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-EB-A24D-01 15 69320647 69320647 C T NOX5 Silent p.L89L 0.54 TCGA-EB-A24D-01 15 69329473 69329473 C T NOX5 Silent p.L432L 0.29 TCGA-EB-A24D-01 15 69560974 69560974 C T GLCE Silent p.N415N 0.25 TCGA-EB-A24D-01 15 69696187 69696187 G A PAQR5 3'UTR 0.18 TCGA-EB-A24D-01 15 70358439 70358439 G A TLE3 Missense_Mutation p.S164F 0.66 tolerated(0.09) benign(0.015) TCGA-EB-A24D-01 15 74865202 74865202 G A ARID3B Splice_Site p.X185_splice 0.16 TCGA-EB-A24D-01 15 75042580 75042580 G A CYP1A2 Silent p.K167K 0.58 TCGA-EB-A24D-01 15 79082136 79082136 C T ADAMTS7 Missense_Mutation p.G358E 0.67 deleterious(0.02) possibly_damaging(0.873) TCGA-EB-A24D-01 15 85660972 85660972 G A PDE8A Missense_Mutation p.E546K 0.27 deleterious(0.01) probably_damaging(1) TCGA-EB-A24D-01 15 90280958 90280958 G C WDR93 Missense_Mutation p.R588P 0.53 deleterious(0) probably_damaging(0.922) TCGA-EB-A24D-01 15 93595475 93595475 C T RGMA Silent p.P139P 0.47 TCGA-EB-A24D-01 16 1033854 1033854 C A SOX8 Missense_Mutation p.H183Q 0.70 tolerated(1) benign(0) TCGA-EB-A24D-01 16 108679 108679 C T RHBDF1 Missense_Mutation p.R743Q 0.26 tolerated(0.09) benign(0.034) TCGA-EB-A24D-01 16 16276311 16276311 C T ABCC6 Silent p.V735V 0.59 TCGA-EB-A24D-01 16 1630847 1630847 G A IFT140 Silent p.T479T 0.33 TCGA-EB-A24D-01 16 1630848 1630848 G A IFT140 Missense_Mutation p.T479I 0.32 deleterious(0.04) benign(0.365) TCGA-EB-A24D-01 16 20373858 20373858 C T PDILT Silent p.E428E 0.64 TCGA-EB-A24D-01 16 21771827 21771827 C T OTOA Missense_Mutation p.P1129L 0.13 tolerated_low_confidence(0.4) benign(0.002) TCGA-EB-A24D-01 16 24566945 24566945 C T RBBP6 Silent p.L120L 0.50 TCGA-EB-A24D-01 16 2812281 2812281 C T SRRM2 Silent p.S584S 0.36 TCGA-EB-A24D-01 16 2815758 2815758 C T SRRM2 Silent p.R1743R 0.25 TCGA-EB-A24D-01 16 2815759 2815759 C T SRRM2 Nonsense_Mutation p.R1744* 0.25 TCGA-EB-A24D-01 16 28966005 28966005 T G NFATC2IP Splice_Site p.X193_splice 0.71 TCGA-EB-A24D-01 16 29810978 29810978 C T KIF22 Silent p.I340I 0.67 TCGA-EB-A24D-01 16 31141809 31141809 G A KAT8 Missense_Mutation p.G347S 0.59 deleterious(0) probably_damaging(0.997) TCGA-EB-A24D-01 16 32077597 32077597 C T IGHV3OR16-9 Missense_Mutation p.S71F 0.26 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-EB-A24D-01 16 48117931 48117931 C T ABCC12 Silent p.L1294L 0.23 TCGA-EB-A24D-01 16 54967445 54967445 T C IRX5 Missense_Mutation p.L371P 0.26 tolerated(0.34) unknown(0) TCGA-EB-A24D-01 16 56673927 56673927 C T MT1A 3'UTR 0.85 TCGA-EB-A24D-01 16 57188231 57188231 G A FAM192A Nonsense_Mutation p.R246* 0.26 TCGA-EB-A24D-01 16 57188232 57188232 G A FAM192A Silent p.F245F 0.25 TCGA-EB-A24D-01 16 57250944 57250944 C T RSPRY1 Missense_Mutation p.L300F 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A24D-01 16 67314157 67314157 C T PLEKHG4 Silent p.F70F 0.56 TCGA-EB-A24D-01 16 67694201 67694201 G A ACD Missense_Mutation p.P61S 0.35 tolerated_low_confidence(0.31) benign(0.041) TCGA-EB-A24D-01 16 70291981 70291981 G A AARS Missense_Mutation p.S711F 0.47 deleterious(0.03) probably_damaging(0.915) TCGA-EB-A24D-01 16 70929936 70929936 G A HYDIN Silent p.I3032I 0.31 TCGA-EB-A24D-01 16 70972659 70972659 C T HYDIN Splice_Site p.X2285_splice 0.16 TCGA-EB-A24D-01 16 71065807 71065807 G A HYDIN Missense_Mutation p.S848F 0.16 probably_damaging(0.989) TCGA-EB-A24D-01 16 7568259 7568259 C T RBFOX1 Silent p.P66P 0.25 TCGA-EB-A24D-01 16 81208372 81208372 C T PKD1L2 Missense_Mutation p.E167K 0.29 tolerated(0.37) benign(0.003) TCGA-EB-A24D-01 16 84228155 84228155 C T ADAD2 Missense_Mutation p.L248F 0.29 deleterious(0.03) probably_damaging(0.929) TCGA-EB-A24D-01 16 84271081 84271081 G A KCNG4 Missense_Mutation p.P4L 0.24 tolerated_low_confidence(0.27) benign(0.002) TCGA-EB-A24D-01 16 84488460 84488460 G A ATP2C2 Missense_Mutation p.G673R 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 16 8729078 8729078 C T METTL22 Silent p.L203L 0.59 TCGA-EB-A24D-01 16 87678092 87678092 C T JPH3 Missense_Mutation p.S204F 0.45 deleterious(0) benign(0.212) TCGA-EB-A24D-01 16 89789687 89789687 C T ZNF276 Silent p.S192S 0.53 TCGA-EB-A24D-01 16 89789688 89789688 C T ZNF276 Missense_Mutation p.P193S 0.54 tolerated(0.07) benign(0.035) TCGA-EB-A24D-01 17 10348605 10348605 G A MYH4 Silent p.I1748I 0.24 TCGA-EB-A24D-01 17 10404786 10404786 C T MYH1 Missense_Mutation p.E1127K 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A24D-01 17 16456253 16456253 A G ZNF287 Silent p.C401C 0.22 TCGA-EB-A24D-01 17 19459367 19459367 G A SLC47A1 Missense_Mutation p.V305M 0.16 tolerated(0.09) benign(0.285) TCGA-EB-A24D-01 17 20406445 20406445 C T RP11-434D2.7 3'Flank 0.53 TCGA-EB-A24D-01 17 26488234 26488234 C T NLK Silent p.V231V 0.46 TCGA-EB-A24D-01 17 26604334 26604334 G A AC061975.8 5'Flank 0.54 TCGA-EB-A24D-01 17 26822813 26822813 C T SLC13A2 Silent p.F532F 0.17 TCGA-EB-A24D-01 17 26938998 26938998 G A RP11-192H23.4 Intron 0.44 TCGA-EB-A24D-01 17 26939041 26939041 G A RP11-192H23.4 Intron 0.51 TCGA-EB-A24D-01 17 33520498 33520498 C T SLC35G3 Missense_Mutation p.A277T 0.22 tolerated(0.24) benign(0.153) TCGA-EB-A24D-01 17 33738324 33738324 G A SLFN12 3'UTR 0.47 TCGA-EB-A24D-01 17 3844304 3844304 G A ATP2A3 Silent p.I687I 0.15 TCGA-EB-A24D-01 17 39537404 39537404 C T KRT34 Silent p.R206R 0.46 TCGA-EB-A24D-01 17 40870572 40870572 G A EZH1 Silent p.I277I 0.36 TCGA-EB-A24D-01 17 42426541 42426541 C T GRN Silent p.T3T 0.46 TCGA-EB-A24D-01 17 42475476 42475476 G A GPATCH8 Silent p.L1323L 0.54 TCGA-EB-A24D-01 17 42828218 42828218 C T DBF4B Missense_Mutation p.S482F 0.51 deleterious_low_confidence(0.04) benign(0.137) TCGA-EB-A24D-01 17 42882944 42882944 A C GJC1 Missense_Mutation p.I81S 0.25 deleterious(0) probably_damaging(0.992) TCGA-EB-A24D-01 17 42883090 42883090 C T GJC1 Silent p.R32R 0.26 TCGA-EB-A24D-01 17 43923335 43923335 C T SPPL2C Silent p.L355L 0.21 TCGA-EB-A24D-01 17 48940475 48940475 G A TOB1 Nonsense_Mutation p.Q302* 0.55 TCGA-EB-A24D-01 17 49118926 49118926 G A SPAG9 Missense_Mutation p.T226I 0.21 tolerated(0.11) possibly_damaging(0.806) TCGA-EB-A24D-01 17 5045413 5045413 G A USP6 Silent p.G563G 0.31 TCGA-EB-A24D-01 17 56293562 56293562 G A MKS1 Missense_Mutation p.P102S 0.63 tolerated(0.08) possibly_damaging(0.652) TCGA-EB-A24D-01 17 61889390 61889390 G A DDX42 Silent p.G499G 0.65 TCGA-EB-A24D-01 17 63545770 63545770 T C AXIN2 Missense_Mutation p.K275R 0.23 tolerated(1) benign(0.015) TCGA-EB-A24D-01 17 64800119 64800119 C T PRKCA Silent p.P661P 0.20 TCGA-EB-A24D-01 17 65124822 65124822 G A HELZ Missense_Mutation p.A1111V 0.17 deleterious(0.01) benign(0.436) TCGA-EB-A24D-01 17 6978516 6978516 C T CLEC10A Missense_Mutation p.D270N 0.41 tolerated(0.54) benign(0.128) TCGA-EB-A24D-01 17 7107068 7107068 G A DLG4 Missense_Mutation p.S136F 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A24D-01 17 71166474 71166474 A T SSTR2 Missense_Mutation p.E339V 0.22 tolerated(0.14) benign(0.017) TCGA-EB-A24D-01 17 72943286 72943286 C G OTOP3 Missense_Mutation p.L446V 0.11 tolerated(0.1) benign(0.15) TCGA-EB-A24D-01 17 73000177 73000177 C T CDR2L 3'UTR 0.38 TCGA-EB-A24D-01 17 73000178 73000178 C T CDR2L 3'UTR 0.38 TCGA-EB-A24D-01 17 73259559 73259559 C T MRPS7 Missense_Mutation p.P160S 0.18 tolerated(0.51) benign(0.016) TCGA-EB-A24D-01 17 7346162 7346162 G A FGF11 Intron 0.56 TCGA-EB-A24D-01 17 73654435 73654435 G A RECQL5 Silent p.S364S 0.43 TCGA-EB-A24D-01 17 74005667 74005667 C T EVPL Missense_Mutation p.E1207K 0.19 deleterious(0) benign(0.345) TCGA-EB-A24D-01 17 7606160 7606160 G A WRAP53 Missense_Mutation p.D422N 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A24D-01 17 7671273 7671273 G A DNAH2 Nonsense_Mutation p.W1244* 0.44 TCGA-EB-A24D-01 17 7850948 7850948 C T CNTROB Missense_Mutation p.P685S 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-EB-A24D-01 17 7850949 7850949 C T CNTROB Missense_Mutation p.P685L 0.26 deleterious_low_confidence(0.03) benign(0.021) TCGA-EB-A24D-01 17 7943218 7943218 A T ALOX15B Splice_Site p.X123_splice 0.52 TCGA-EB-A24D-01 17 79866935 79866935 G A PCYT2 Intron 0.19 TCGA-EB-A24D-01 17 80194685 80194685 A C SLC16A3 Missense_Mutation p.M102L 0.60 tolerated(0.32) probably_damaging(0.919) TCGA-EB-A24D-01 18 19424141 19424141 C T MIB1 Missense_Mutation p.S713F 0.44 tolerated(0.07) possibly_damaging(0.657) TCGA-EB-A24D-01 18 2554989 2554989 G A METTL4 Missense_Mutation p.L170F 0.37 tolerated(0.24) benign(0.053) TCGA-EB-A24D-01 18 28584309 28584309 G A DSC3 Nonsense_Mutation p.Q638* 0.46 TCGA-EB-A24D-01 18 29041278 29041278 G A DSG3 Nonsense_Mutation p.W301* 0.43 TCGA-EB-A24D-01 18 30093509 30093509 C T WBP11P1 RNA 0.41 TCGA-EB-A24D-01 18 47527697 47527697 G A MYO5B Silent p.F180F 0.49 TCGA-EB-A24D-01 18 48190390 48190390 T G MAPK4 Missense_Mutation p.V21G 0.35 tolerated(0.09) possibly_damaging(0.684) TCGA-EB-A24D-01 18 61602223 61602223 C T SERPINB10 Missense_Mutation p.A314V 0.34 deleterious(0.04) possibly_damaging(0.585) TCGA-EB-A24D-01 18 61602224 61602224 C T SERPINB10 Silent p.A314A 0.33 TCGA-EB-A24D-01 18 76754751 76754751 G A SALL3 Silent p.P920P 0.50 TCGA-EB-A24D-01 18 76754784 76754784 C T SALL3 Silent p.I931I 0.23 TCGA-EB-A24D-01 18 8720455 8720455 C T SOGA2 Silent p.S106S 0.35 TCGA-EB-A24D-01 19 1041268 1041268 G A ABCA7 5'UTR 0.45 TCGA-EB-A24D-01 19 11625030 11625030 G A ECSIT Missense_Mutation p.R35C 0.43 tolerated(0.11) benign(0.001) TCGA-EB-A24D-01 19 14263373 14263373 G C LPHN1 Missense_Mutation p.S1164C 0.65 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 19 17476173 17476173 C T PLVAP Silent p.E367E 0.26 TCGA-EB-A24D-01 19 18710594 18710594 A G CRLF1 Missense_Mutation p.C60R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 19 1880087 1880087 A C ABHD17A Missense_Mutation p.N171K 0.34 deleterious(0) probably_damaging(0.997) TCGA-EB-A24D-01 19 18943081 18943081 C T UPF1 Silent p.A21A 0.45 TCGA-EB-A24D-01 19 19162790 19162790 G A ARMC6 Silent p.R213R 0.11 TCGA-EB-A24D-01 19 19327760 19327760 A G NCAN 5'UTR 0.47 TCGA-EB-A24D-01 19 19747524 19747524 G A GMIP Missense_Mutation p.S440F 0.37 deleterious(0) probably_damaging(0.95) TCGA-EB-A24D-01 19 20045670 20045670 C T ZNF93 3'UTR 0.65 TCGA-EB-A24D-01 19 20045681 20045681 C T ZNF93 3'UTR 0.24 TCGA-EB-A24D-01 19 22156988 22156988 T G ZNF208 Missense_Mutation p.K283T 0.43 deleterious(0) probably_damaging(0.977) TCGA-EB-A24D-01 19 22271596 22271596 G C ZNF257 Missense_Mutation p.E348D 0.63 deleterious(0.02) benign(0.027) TCGA-EB-A24D-01 19 307350 307350 G T MIER2 Missense_Mutation p.P462Q 0.48 tolerated(0.06) benign(0.314) TCGA-EB-A24D-01 19 31767497 31767497 G A TSHZ3 Missense_Mutation p.P1068S 0.33 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 19 33444520 33444520 C A CEP89 Splice_Site p.X164_splice 0.04 TCGA-EB-A24D-01 19 35715983 35715983 C T FAM187B Silent p.K285K 0.27 TCGA-EB-A24D-01 19 36369819 36369819 C T APLP1 Missense_Mutation p.P560S 0.49 tolerated(0.65) probably_damaging(0.999) TCGA-EB-A24D-01 19 37871224 37871224 G A ZNF527 Missense_Mutation p.G69E 0.21 tolerated(0.1) benign(0.028) TCGA-EB-A24D-01 19 39001408 39001408 G A RYR1 Missense_Mutation p.E3037K 0.54 benign(0.03) TCGA-EB-A24D-01 19 39994845 39994845 C T DLL3 Missense_Mutation p.P263S 0.24 tolerated(0.08) benign(0.043) TCGA-EB-A24D-01 19 41455071 41455071 C T AC092071.1 3'Flank 0.20 TCGA-EB-A24D-01 19 42133272 42133272 G A CEACAM4 Silent p.I20I 0.35 TCGA-EB-A24D-01 19 42621408 42621408 T A POU2F2 Silent p.L99L 0.16 TCGA-EB-A24D-01 19 43680131 43680131 C T PSG5 Silent p.R200R 0.22 TCGA-EB-A24D-01 19 44096700 44096703 GAGC - IRGQ Frame_Shift_Del p.L450Pfs*101 0.28 TCGA-EB-A24D-01 19 4409732 4409732 C T CHAF1A Silent p.F312F 0.51 TCGA-EB-A24D-01 19 44273133 44273133 G A KCNN4 Silent p.S367S 0.48 TCGA-EB-A24D-01 19 44934538 44934538 G A ZNF229 Missense_Mutation p.H140Y 0.26 tolerated(0.49) benign(0) TCGA-EB-A24D-01 19 45315444 45315444 C T BCAM Missense_Mutation p.R77C 0.47 deleterious(0.03) possibly_damaging(0.901) TCGA-EB-A24D-01 19 46498700 46498700 C T CCDC61 5'Flank 0.22 TCGA-EB-A24D-01 19 46915027 46915027 G A CCDC8 Silent p.A347A 0.47 TCGA-EB-A24D-01 19 48836445 48836445 C T TMEM143 3'UTR 0.30 TCGA-EB-A24D-01 19 48836446 48836446 C T TMEM143 3'UTR 0.30 TCGA-EB-A24D-01 19 49116419 49116419 C T FAM83E Missense_Mutation p.A71T 0.46 tolerated(0.09) probably_damaging(0.99) TCGA-EB-A24D-01 19 49377269 49377269 G A PPP1R15A Nonsense_Mutation p.W260* 0.22 TCGA-EB-A24D-01 19 49934644 49934644 G A SLC17A7 Silent p.A404A 0.20 TCGA-EB-A24D-01 19 49934645 49934645 G A SLC17A7 Missense_Mutation p.A404V 0.21 deleterious(0.03) possibly_damaging(0.51) TCGA-EB-A24D-01 19 52220346 52220346 C G HAS1 Missense_Mutation p.R268P 0.23 deleterious(0) probably_damaging(0.986) TCGA-EB-A24D-01 19 53740884 53740884 C T ZNF677 Missense_Mutation p.E366K 0.25 tolerated(0.36) benign(0.007) TCGA-EB-A24D-01 19 53770866 53770866 C T VN1R4 Missense_Mutation p.G18E 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 19 54172509 54172509 G A MIR512-1 3'Flank 0.21 TCGA-EB-A24D-01 19 54254527 54254527 C T MIR522 RNA 0.48 TCGA-EB-A24D-01 19 54803746 54803746 G A LILRA3 Silent p.L26L 0.40 TCGA-EB-A24D-01 19 54823302 54823302 C T LILRA5 Missense_Mutation p.E81K 0.43 tolerated(0.08) possibly_damaging(0.749) TCGA-EB-A24D-01 19 54844773 54844773 C T LILRA4 3'UTR 0.44 TCGA-EB-A24D-01 19 56171916 56171916 C T U2AF2 Missense_Mutation p.R89C 0.42 tolerated(0.21) benign(0.006) TCGA-EB-A24D-01 19 56369580 56369580 C T NLRP4 Missense_Mutation p.S274F 0.34 tolerated(0.08) probably_damaging(0.956) TCGA-EB-A24D-01 19 56369884 56369884 C T NLRP4 Silent p.F375F 0.30 TCGA-EB-A24D-01 19 58153489 58153489 C T ZNF211 Silent p.S610S 0.28 TCGA-EB-A24D-01 19 58437580 58437580 G A ZNF418 Missense_Mutation p.H657Y 0.22 deleterious(0.03) benign(0.105) TCGA-EB-A24D-01 19 59061933 59061933 C A TRIM28 3'UTR 0.58 TCGA-EB-A24D-01 19 6270714 6270714 G A MLLT1 Silent p.P23P 0.42 TCGA-EB-A24D-01 19 7607900 7607900 C T PNPLA6 Missense_Mutation p.S522F 0.51 deleterious(0) possibly_damaging(0.784) TCGA-EB-A24D-01 19 7916579 7916579 G A EVI5L Missense_Mutation p.V304M 0.09 deleterious(0) possibly_damaging(0.803) TCGA-EB-A24D-01 19 8808716 8808716 T C ACTL9 Silent p.Q112Q 0.29 TCGA-EB-A24D-01 19 8841397 8841397 G A OR2Z1 Missense_Mutation p.D3N 0.41 tolerated(0.57) benign(0.001) TCGA-EB-A24D-01 19 8993038 8993038 G A MUC16 Silent p.F13907F 0.20 TCGA-EB-A24D-01 19 8994416 8994416 C T MUC16 Splice_Site p.X13825_splice 0.19 TCGA-EB-A24D-01 19 9046744 9046744 C T MUC16 Silent p.G11629G 0.42 TCGA-EB-A24D-01 19 9046745 9046745 C T MUC16 Missense_Mutation p.G11629E 0.42 benign(0.016) TCGA-EB-A24D-01 19 9056344 9056344 C T MUC16 Missense_Mutation p.E10368K 0.29 benign(0.007) TCGA-EB-A24D-01 19 9062981 9062981 C T MUC16 Silent p.R8155R 0.26 TCGA-EB-A24D-01 19 9489680 9489680 G A ZNF177 Missense_Mutation p.E26K 0.25 deleterious(0.01) possibly_damaging(0.54) TCGA-EB-A24D-01 19 9579859 9579859 C T ZNF560 Nonsense_Mutation p.W178* 0.36 TCGA-EB-A24D-01 1 103468307 103468307 T C COL11A1 Missense_Mutation p.N680S 0.43 unknown(0) TCGA-EB-A24D-01 1 10464254 10464254 T G PGD Missense_Mutation p.F123V 0.39 deleterious(0) probably_damaging(0.957) TCGA-EB-A24D-01 1 10719783 10719783 G A CASZ1 Missense_Mutation p.T439I 0.33 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EB-A24D-01 1 111061179 111061180 CT - KCNA10 Frame_Shift_Del p.E77Afs*6 0.25 TCGA-EB-A24D-01 1 111957229 111957229 C T OVGP1 Missense_Mutation p.E632K 0.53 tolerated_low_confidence(0.51) benign(0.007) TCGA-EB-A24D-01 1 111957230 111957230 C T OVGP1 Silent p.P631P 0.53 TCGA-EB-A24D-01 1 118420659 118420659 G A GDAP2 Missense_Mutation p.P473L 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 1 11985629 11985629 C T KIAA2013 Silent p.G222G 0.50 TCGA-EB-A24D-01 1 120336796 120336796 G A REG4 3'UTR 0.55 TCGA-EB-A24D-01 1 120458966 120458966 T A NOTCH2 Nonsense_Mutation p.K2127* 0.23 TCGA-EB-A24D-01 1 1267914 1267914 C T TAS1R3 Missense_Mutation p.P335S 0.44 tolerated(0.87) benign(0.001) TCGA-EB-A24D-01 1 1267915 1267915 C T TAS1R3 Missense_Mutation p.P335L 0.44 tolerated(0.22) benign(0.049) TCGA-EB-A24D-01 1 12884953 12884953 G A PRAMEF11 Silent p.L386L 0.57 TCGA-EB-A24D-01 1 152285396 152285396 C T FLG Missense_Mutation p.G656S 0.89 probably_damaging(0.959) TCGA-EB-A24D-01 1 152328874 152328874 G A FLG2 Missense_Mutation p.S463F 0.89 unknown(0) TCGA-EB-A24D-01 1 153920746 153920746 A C CRTC2 Missense_Mutation p.F641V 0.21 tolerated(0.74) probably_damaging(0.985) TCGA-EB-A24D-01 1 156873774 156873774 G A PEAR1 Missense_Mutation p.G19E 0.33 tolerated(0.69) benign(0) TCGA-EB-A24D-01 1 157062654 157062654 C T ETV3L Silent p.G291G 0.24 TCGA-EB-A24D-01 1 159284433 159284433 G A OR10J3 Missense_Mutation p.S6F 0.32 tolerated(0.77) benign(0.001) TCGA-EB-A24D-01 1 159863040 159863040 C T CCDC19 Missense_Mutation p.R20K 0.86 tolerated(0.25) benign(0.025) TCGA-EB-A24D-01 1 160808685 160808685 C T CD244 Intron 0.50 TCGA-EB-A24D-01 1 161168006 161168006 A C ADAMTS4 Missense_Mutation p.S138A 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-EB-A24D-01 1 16757814 16757814 C T SPATA21 Intron 0.52 TCGA-EB-A24D-01 1 168260457 168260457 C T TBX19 Missense_Mutation p.S88F 0.48 deleterious(0.03) probably_damaging(1) TCGA-EB-A24D-01 1 1688281 1688281 G A NADK Intron 0.19 TCGA-EB-A24D-01 1 16946384 16946384 C T RP5-1182A14.5 3'Flank 0.23 TCGA-EB-A24D-01 1 169762117 169762117 T C METTL18 Silent p.E240E 0.29 TCGA-EB-A24D-01 1 171244498 171244498 G T FMO1 Missense_Mutation p.S112I 0.50 deleterious(0.02) possibly_damaging(0.882) TCGA-EB-A24D-01 1 173703101 173703101 C T KLHL20 Silent p.P91P 0.20 TCGA-EB-A24D-01 1 17682880 17682880 G A PADI4 Missense_Mutation p.R495K 0.59 tolerated(0.16) possibly_damaging(0.673) TCGA-EB-A24D-01 1 17682881 17682881 G A PADI4 Silent p.R495R 0.61 TCGA-EB-A24D-01 1 179991953 179991953 C T CEP350 Missense_Mutation p.S1119L 0.93 benign(0) TCGA-EB-A24D-01 1 181767596 181767596 G A CACNA1E Missense_Mutation p.E2190K 0.24 tolerated(0.65) benign(0.401) TCGA-EB-A24D-01 1 182551309 182551309 C T RNASEL Missense_Mutation p.V551I 0.12 tolerated(0.98) benign(0.001) TCGA-EB-A24D-01 1 19523652 19523652 A G UBR4 Missense_Mutation p.L334P 0.19 probably_damaging(0.973) TCGA-EB-A24D-01 1 196395036 196395036 C T KCNT2 Missense_Mutation p.R356Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-EB-A24D-01 1 198492686 198492686 G A ATP6V1G3 Silent p.G64G 0.92 TCGA-EB-A24D-01 1 200801385 200801385 G A CAMSAP2 Missense_Mutation p.E235K 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A24D-01 1 201046244 201046244 G A CACNA1S Missense_Mutation p.S544L 0.94 deleterious(0) probably_damaging(0.966) TCGA-EB-A24D-01 1 201386941 201386941 C T TNNI1 Splice_Site 0.55 TCGA-EB-A24D-01 1 202113662 202113662 C T ARL8A Silent p.K13K 0.92 TCGA-EB-A24D-01 1 20412659 20412659 G C PLA2G5 Missense_Mutation p.G42R 0.55 deleterious(0) probably_damaging(0.989) TCGA-EB-A24D-01 1 204944475 204944475 G A NFASC Silent p.V545V 0.89 TCGA-EB-A24D-01 1 210415306 210415306 C T SERTAD4 Missense_Mutation p.S232F 0.55 tolerated_low_confidence(0.06) possibly_damaging(0.733) TCGA-EB-A24D-01 1 212798411 212798411 C T FAM71A Silent p.N64N 0.92 TCGA-EB-A24D-01 1 21605833 21605833 G A ECE1 Intron 0.56 TCGA-EB-A24D-01 1 220970049 220970049 T C MARC1 Missense_Mutation p.F172L 0.13 deleterious(0) benign(0.223) TCGA-EB-A24D-01 1 226562022 226562022 G A PARP1 Missense_Mutation p.P659S 0.82 tolerated(0.4) benign(0.002) TCGA-EB-A24D-01 1 228401965 228401965 C T OBSCN Missense_Mutation p.P450L 0.56 probably_damaging(0.983) TCGA-EB-A24D-01 1 228401966 228401966 C T OBSCN Silent p.P450P 0.55 TCGA-EB-A24D-01 1 228475527 228475527 C T OBSCN Missense_Mutation p.P3655L 0.38 benign(0.383) TCGA-EB-A24D-01 1 230841909 230841909 C T AGT Silent p.Q298Q 0.27 TCGA-EB-A24D-01 1 236920792 236920792 C T ACTN2 Missense_Mutation p.R721C 0.83 deleterious(0) probably_damaging(0.993) TCGA-EB-A24D-01 1 23760005 23760005 C T ASAP3 Silent p.G680G 0.22 TCGA-EB-A24D-01 1 240072373 240072373 C T CHRM3 Missense_Mutation p.P541L 0.84 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 1 240072374 240072374 C T CHRM3 Silent p.P541P 0.84 TCGA-EB-A24D-01 1 240341305 240341305 C T FMN2 Missense_Mutation p.P623S 0.87 unknown(0) TCGA-EB-A24D-01 1 242042408 242042408 C T EXO1 Silent p.P624P 0.89 TCGA-EB-A24D-01 1 24463708 24463708 C T IL22RA1 Missense_Mutation p.E90K 0.30 tolerated(0.06) possibly_damaging(0.595) TCGA-EB-A24D-01 1 248202182 248202182 T A OR2L2 Missense_Mutation p.F205I 0.19 tolerated(0.11) benign(0.367) TCGA-EB-A24D-01 1 248224303 248224303 G A OR2L3 Missense_Mutation p.G107E 0.54 deleterious(0.04) possibly_damaging(0.453) TCGA-EB-A24D-01 1 248344023 248344023 A T OR2M2 Missense_Mutation p.M246L 0.05 tolerated(0.16) benign(0.013) TCGA-EB-A24D-01 1 27690531 27690531 C T MAP3K6 Silent p.R247R 0.46 TCGA-EB-A24D-01 1 28858478 28858478 C T RCC1 Silent p.T110T 0.51 TCGA-EB-A24D-01 1 32796199 32796199 G A HDAC1 Silent p.E250E 0.23 TCGA-EB-A24D-01 1 33956987 33956987 C T ZSCAN20 Missense_Mutation p.R377C 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 1 33960632 33960632 C T ZSCAN20 Silent p.I896I 0.27 TCGA-EB-A24D-01 1 33960633 33960633 C T ZSCAN20 Missense_Mutation p.H897Y 0.28 deleterious(0.02) probably_damaging(0.944) TCGA-EB-A24D-01 1 34330176 34330176 G A HMGB4 Silent p.G128G 0.18 TCGA-EB-A24D-01 1 35881156 35881156 C T ZMYM4 Missense_Mutation p.L1384F 0.23 deleterious(0) possibly_damaging(0.651) TCGA-EB-A24D-01 1 36643603 36643603 C T MAP7D1 Silent p.S503S 0.30 TCGA-EB-A24D-01 1 36643604 36643604 C T MAP7D1 Missense_Mutation p.P504S 0.26 benign(0.326) TCGA-EB-A24D-01 1 36754862 36754862 C G THRAP3 Silent p.L414L 0.52 TCGA-EB-A24D-01 1 36754863 36754863 C T THRAP3 Nonsense_Mutation p.R415* 0.52 TCGA-EB-A24D-01 1 41579008 41579008 G A SCMH1 Missense_Mutation p.P221L 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 1 47282822 47282822 C T CYP4B1 Silent p.V392V 0.46 TCGA-EB-A24D-01 1 47406984 47406984 C T CYP4A11 Missense_Mutation p.R41K 0.48 tolerated(0.07) benign(0.356) TCGA-EB-A24D-01 1 47685531 47685531 G A TAL1 Missense_Mutation p.S286F 0.15 deleterious(0) probably_damaging(0.994) TCGA-EB-A24D-01 1 53443971 53443971 G A SCP2 Missense_Mutation p.E253K 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A24D-01 1 54284741 54284741 G A NDC1 Silent p.F202F 0.24 TCGA-EB-A24D-01 1 54284742 54284742 A C NDC1 Missense_Mutation p.F202C 0.23 deleterious(0) probably_damaging(0.967) TCGA-EB-A24D-01 1 55167774 55167774 C T MROH7 Silent p.V1099V 0.21 TCGA-EB-A24D-01 1 55224298 55224298 G A PARS2 Silent p.F179F 0.32 TCGA-EB-A24D-01 1 57417792 57417792 C T C8B Missense_Mutation p.G199R 0.59 deleterious(0) possibly_damaging(0.867) TCGA-EB-A24D-01 1 5937187 5937187 C T NPHP4 Missense_Mutation p.G928E 0.20 tolerated(0.63) benign(0.044) TCGA-EB-A24D-01 1 6142263 6142263 G C KCNAB2 Missense_Mutation p.E103D 0.18 deleterious(0.01) benign(0.008) TCGA-EB-A24D-01 1 62579761 62579761 G A INADL Missense_Mutation p.E1500K 0.44 deleterious(0.01) possibly_damaging(0.834) TCGA-EB-A24D-01 1 6528347 6528347 G A PLEKHG5 Missense_Mutation p.P929L 0.54 tolerated(0.1) probably_damaging(0.991) TCGA-EB-A24D-01 1 66083769 66083769 G A LEPR Missense_Mutation p.E779K 0.15 tolerated(0.45) benign(0.098) TCGA-EB-A24D-01 1 75139216 75139216 C T C1orf173 5'UTR 0.51 TCGA-EB-A24D-01 1 7998374 7998374 C T TNFRSF9 Silent p.R75R 0.19 TCGA-EB-A24D-01 1 89662941 89662941 C A GBP4 Silent p.V29V 0.26 TCGA-EB-A24D-01 1 898587 898587 C T KLHL17 Missense_Mutation p.R381W 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A24D-01 1 94997936 94997936 T G F3 Missense_Mutation p.N231T 0.25 deleterious(0) possibly_damaging(0.788) TCGA-EB-A24D-01 20 1424392 1424392 G A NSFL1C 3'UTR 0.56 TCGA-EB-A24D-01 20 1426367 1426367 G A NSFL1C Silent p.I300I 0.42 TCGA-EB-A24D-01 20 18365132 18365132 G A DZANK1 Missense_Mutation p.L724F 0.48 tolerated(0.05) benign(0.009) TCGA-EB-A24D-01 20 18365133 18365133 G A DZANK1 Silent p.D723D 0.48 TCGA-EB-A24D-01 20 23064944 23064944 G A CD93 Missense_Mutation p.S629F 0.49 deleterious(0) possibly_damaging(0.907) TCGA-EB-A24D-01 20 2776787 2776787 C T CPXM1 Nonsense_Mutation p.W421* 0.24 TCGA-EB-A24D-01 20 31024332 31024332 C T ASXL1 Missense_Mutation p.R1273C 0.52 tolerated(0.17) benign(0) TCGA-EB-A24D-01 20 31890751 31890751 C T BPIFB1 Silent p.I337I 0.35 TCGA-EB-A24D-01 20 35282027 35282027 G A NDRG3 Missense_Mutation p.P342S 0.19 tolerated(0.9) benign(0.002) TCGA-EB-A24D-01 20 35766354 35766354 A G MROH8 Missense_Mutation p.V530A 0.24 tolerated(1) benign(0.071) TCGA-EB-A24D-01 20 35833295 35833295 C T RPN2 Silent p.S227S 0.34 TCGA-EB-A24D-01 20 36870025 36870025 C T KIAA1755 Missense_Mutation p.E170K 0.33 deleterious(0.01) benign(0.019) TCGA-EB-A24D-01 20 42680092 42680092 C T TOX2 Silent p.I186I 0.45 TCGA-EB-A24D-01 20 44314634 44314634 C T WFDC10B Intron 0.35 TCGA-EB-A24D-01 20 44678350 44678350 G A SLC12A5 Missense_Mutation p.G724E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 20 45354013 45354013 C T SLC2A10 Missense_Mutation p.S113F 0.37 deleterious(0) probably_damaging(0.934) TCGA-EB-A24D-01 20 4768401 4768401 C T RASSF2 Splice_Site p.X231_splice 0.43 TCGA-EB-A24D-01 20 50408085 50408085 A G SALL4 Missense_Mutation p.F313L 0.59 tolerated(0.28) benign(0.022) TCGA-EB-A24D-01 20 5904156 5904156 G A CHGB Missense_Mutation p.A456T 0.13 tolerated(0.1) possibly_damaging(0.511) TCGA-EB-A24D-01 20 6088236 6088236 C T FERMT1 Silent p.E264E 0.40 TCGA-EB-A24D-01 20 61594002 61594002 C T SLC17A9 Missense_Mutation p.S175F 0.21 deleterious(0) probably_damaging(0.997) TCGA-EB-A24D-01 20 62559804 62559804 C T DNAJC5 Missense_Mutation p.R36W 0.48 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 20 9624776 9624776 C T PAK7 Missense_Mutation p.M67I 0.23 tolerated(0.07) probably_damaging(0.968) TCGA-EB-A24D-01 21 10996106 10996106 C T TPTE RNA 0.15 TCGA-EB-A24D-01 21 11029689 11029689 C T BAGE2 RNA 0.16 TCGA-EB-A24D-01 21 30332977 30332977 C T LTN1 Missense_Mutation p.D785N 0.33 tolerated(0.32) benign(0.003) TCGA-EB-A24D-01 21 34715885 34715885 C T IFNAR1 Silent p.L192L 0.40 TCGA-EB-A24D-01 21 41173213 41173213 C T IGSF5 Missense_Mutation p.P385S 0.80 tolerated(0.12) possibly_damaging(0.857) TCGA-EB-A24D-01 21 45107506 45107506 G A RRP1B Silent p.G417G 0.97 TCGA-EB-A24D-01 22 16287363 16287363 C T POTEH Missense_Mutation p.E175K 0.26 tolerated(0.54) probably_damaging(0.995) TCGA-EB-A24D-01 22 17280873 17280873 T C XKR3 Missense_Mutation p.N126S 0.40 tolerated(0.43) benign(0.089) TCGA-EB-A24D-01 22 18022035 18022035 C T CECR2 Missense_Mutation p.P714S 0.42 tolerated(0.08) benign(0.053) TCGA-EB-A24D-01 22 19121829 19121829 G A DGCR14 Silent p.T437T 0.33 TCGA-EB-A24D-01 22 23915751 23915751 G A IGLL1 Missense_Mutation p.S115L 0.45 tolerated_low_confidence(0.18) benign(0.007) TCGA-EB-A24D-01 22 24038875 24038875 G A RGL4 Silent p.K387K 0.42 TCGA-EB-A24D-01 22 24038876 24038876 G A RGL4 Splice_Site p.X387_splice 0.42 TCGA-EB-A24D-01 22 24095058 24095058 C T VPREB3 3'UTR 0.27 TCGA-EB-A24D-01 22 38512191 38512191 G A PLA2G6 Silent p.D590D 0.30 TCGA-EB-A24D-01 22 38822683 38822683 C T KCNJ4 3'UTR 0.41 TCGA-EB-A24D-01 22 40696486 40696486 C T TNRC6B Missense_Mutation p.P1246S 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A24D-01 22 42190482 42190482 G A MEI1 Splice_Site p.X1178_splice 0.45 TCGA-EB-A24D-01 22 50945081 50945081 G A LMF2 Silent p.F121F 0.35 TCGA-EB-A24D-01 2 103274328 103274328 C T SLC9A2 Missense_Mutation p.L199F 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A24D-01 2 108487515 108487515 G A RGPD4 Missense_Mutation p.G1019S 0.45 tolerated(0.24) benign(0.019) TCGA-EB-A24D-01 2 10863030 10863030 C T ATP6V1C2 Silent p.L19L 0.12 TCGA-EB-A24D-01 2 10863031 10863031 T G ATP6V1C2 Missense_Mutation p.L19R 0.10 deleterious(0) possibly_damaging(0.903) TCGA-EB-A24D-01 2 110922710 110922710 C T NPHP1 Missense_Mutation p.G216D 0.41 tolerated(0.77) benign(0.004) TCGA-EB-A24D-01 2 112630288 112630288 A G ANAPC1 Missense_Mutation p.V177A 0.45 deleterious(0) probably_damaging(0.997) TCGA-EB-A24D-01 2 119750702 119750702 G A MARCO Missense_Mutation p.E419K 0.34 tolerated(0.36) unknown(0) TCGA-EB-A24D-01 2 128324343 128324343 C T MYO7B Silent p.I137I 0.31 TCGA-EB-A24D-01 2 136630274 136630274 A G MCM6 Missense_Mutation p.F83L 0.21 deleterious(0.03) benign(0.094) TCGA-EB-A24D-01 2 141777525 141777525 G A LRP1B Missense_Mutation p.H646Y 0.24 benign(0.415) TCGA-EB-A24D-01 2 149227049 149227049 G A MBD5 Missense_Mutation p.D513N 0.53 deleterious(0) possibly_damaging(0.741) TCGA-EB-A24D-01 2 152506779 152506779 G A NEB Missense_Mutation p.R2448C 0.62 probably_damaging(1) TCGA-EB-A24D-01 2 1642681 1642681 C T PXDN Silent p.G1381G 0.32 TCGA-EB-A24D-01 2 1642682 1642682 C T PXDN Missense_Mutation p.G1381E 0.32 tolerated(1) benign(0.028) TCGA-EB-A24D-01 2 165997446 165997446 G A SCN3A Silent p.F578F 0.32 TCGA-EB-A24D-01 2 1665910 1665910 C G PXDN Silent p.V538V 0.27 TCGA-EB-A24D-01 2 167056375 167056375 C T SCN9A Splice_Site p.X1581_splice 0.34 TCGA-EB-A24D-01 2 16743311 16743311 C T FAM49A Missense_Mutation p.E133K 0.40 tolerated(0.06) probably_damaging(0.909) TCGA-EB-A24D-01 2 169764518 169764518 C T G6PC2 Silent p.L333L 0.56 TCGA-EB-A24D-01 2 179425001 179425001 C T TTN Missense_Mutation p.E28620K 0.30 TCGA-EB-A24D-01 2 179429624 179429624 G A TTN Missense_Mutation p.P27079S 0.11 TCGA-EB-A24D-01 2 179439291 179439291 G C TTN Missense_Mutation p.S23856R 0.26 TCGA-EB-A24D-01 2 179466211 179466211 C T TTN Missense_Mutation p.D18505N 0.21 TCGA-EB-A24D-01 2 179486283 179486283 G A TTN Nonsense_Mutation p.Q15090* 0.24 TCGA-EB-A24D-01 2 179495596 179495596 C T TTN Missense_Mutation p.E14697K 0.20 TCGA-EB-A24D-01 2 179522854 179522854 T G TTN Missense_Mutation p.K12581T 0.21 TCGA-EB-A24D-01 2 179584835 179584835 G A TTN Missense_Mutation p.S7845L 0.47 TCGA-EB-A24D-01 2 179605327 179605327 C T TTN Silent p.G4211G 0.18 TCGA-EB-A24D-01 2 179615606 179615606 C T TTN Intron 0.58 TCGA-EB-A24D-01 2 179621344 179621344 G A TTN Missense_Mutation p.S3620F 0.28 TCGA-EB-A24D-01 2 18112978 18112978 G A KCNS3 Missense_Mutation p.G235R 0.54 tolerated(0.08) benign(0.078) TCGA-EB-A24D-01 2 18113306 18113306 C T KCNS3 Missense_Mutation p.S344F 0.46 tolerated(1) benign(0.007) TCGA-EB-A24D-01 2 182392032 182392032 A G ITGA4 Missense_Mutation p.N783S 0.19 tolerated(1) benign(0.005) TCGA-EB-A24D-01 2 189868844 189868844 G A COL3A1 Missense_Mutation p.G933E 0.26 probably_damaging(0.999) TCGA-EB-A24D-01 2 189916152 189916152 C T COL5A2 Missense_Mutation p.G942D 0.28 unknown(0) TCGA-EB-A24D-01 2 190602435 190602435 A T ANKAR Silent p.A1150A 0.19 TCGA-EB-A24D-01 2 202254172 202254172 G A TRAK2 Silent p.G416G 0.24 TCGA-EB-A24D-01 2 206480438 206480438 G A PARD3B Silent p.Q1111Q 0.40 TCGA-EB-A24D-01 2 209198165 209198165 C T PIKFYVE Missense_Mutation p.H1364Y 0.22 deleterious(0) possibly_damaging(0.794) TCGA-EB-A24D-01 2 219292738 219292738 C T VIL1 Missense_Mutation p.S133F 0.47 tolerated(0.28) benign(0.014) TCGA-EB-A24D-01 2 228786229 228786229 G A DAW1 Missense_Mutation p.E389K 0.45 deleterious(0) probably_damaging(0.96) TCGA-EB-A24D-01 2 231406069 231406069 C T SP100 Silent p.F795F 0.57 TCGA-EB-A24D-01 2 233323081 233323081 C T ALPI Silent p.S382S 0.50 TCGA-EB-A24D-01 2 233398938 233398938 G A CHRND Silent p.R419R 0.54 TCGA-EB-A24D-01 2 233613726 233613726 T C GIGYF2 Silent p.F67F 0.54 TCGA-EB-A24D-01 2 234752853 234752853 G T HJURP Missense_Mutation p.P191H 0.38 tolerated(0.78) benign(0.439) TCGA-EB-A24D-01 2 24239119 24239119 C T MFSD2B Nonsense_Mutation p.Q106* 0.41 TCGA-EB-A24D-01 2 31483590 31483590 C T EHD3 Silent p.S239S 0.22 TCGA-EB-A24D-01 2 40656001 40656001 C T SLC8A1 Missense_Mutation p.E474K 0.19 tolerated(0.15) benign(0.205) TCGA-EB-A24D-01 2 48602121 48602121 C T FOXN2 Missense_Mutation p.H279Y 0.65 deleterious(0.04) benign(0.018) TCGA-EB-A24D-01 2 49295379 49295379 C T FSHR Missense_Mutation p.G68E 0.19 tolerated(0.06) benign(0.141) TCGA-EB-A24D-01 2 54041733 54041733 C T ERLEC1 Missense_Mutation p.P427L 0.32 deleterious(0) possibly_damaging(0.863) TCGA-EB-A24D-01 2 55459989 55459989 G A RPS27A Missense_Mutation p.G10E 0.30 tolerated(0.07) benign(0.168) TCGA-EB-A24D-01 2 69002233 69002233 G A ARHGAP25 Intron 0.36 TCGA-EB-A24D-01 2 71592693 71592693 C T ZNF638 Missense_Mutation p.P618S 0.33 tolerated(0.24) benign(0.007) TCGA-EB-A24D-01 2 71592694 71592694 C T ZNF638 Missense_Mutation p.P618L 0.32 tolerated(0.1) benign(0.007) TCGA-EB-A24D-01 2 73492531 73492531 C T FBXO41 Silent p.G481G 0.66 TCGA-EB-A24D-01 2 74719532 74719532 G A TTC31 Missense_Mutation p.R374Q 0.44 deleterious(0.03) probably_damaging(0.941) TCGA-EB-A24D-01 2 74719533 74719533 G A TTC31 Silent p.R374R 0.39 TCGA-EB-A24D-01 2 74746338 74746338 C T DQX1 Missense_Mutation p.G609E 0.21 deleterious(0.01) probably_damaging(1) TCGA-EB-A24D-01 2 86832146 86832146 G A RNF103 Missense_Mutation p.P293L 0.10 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 2 89247292 89247292 C T IGKV1-5 Translation_Start_Site p.M1? 0.56 deleterious_low_confidence(0.03) benign(0.341) TCGA-EB-A24D-01 2 90259991 90259991 T C IGKV1D-8 Silent p.L32L 0.24 TCGA-EB-A24D-01 3 108690227 108690227 G A MORC1 Missense_Mutation p.P834S 0.81 deleterious(0.01) benign(0.098) TCGA-EB-A24D-01 3 111732306 111732306 G A TAGLN3 Missense_Mutation p.G170R 0.84 deleterious(0) probably_damaging(0.993) TCGA-EB-A24D-01 3 111797664 111797664 G A TMPRSS7 Missense_Mutation p.G641E 0.85 tolerated(0.1) benign(0.12) TCGA-EB-A24D-01 3 113375998 113375998 G A KIAA2018 Nonsense_Mutation p.Q1511* 0.83 TCGA-EB-A24D-01 3 118937547 118937547 G A B4GALT4 Silent p.F249F 0.24 TCGA-EB-A24D-01 3 122632719 122632719 C T SEMA5B Silent p.K760K 0.82 TCGA-EB-A24D-01 3 123368037 123368037 C T MYLK Silent p.P1431P 0.82 TCGA-EB-A24D-01 3 130308020 130308020 G A COL6A6 Silent p.G1404G 0.85 TCGA-EB-A24D-01 3 140265495 140265495 C T CLSTN2 Missense_Mutation p.S549F 0.93 tolerated(0.07) possibly_damaging(0.79) TCGA-EB-A24D-01 3 142567189 142567189 G A PCOLCE2 Silent p.F106F 0.84 TCGA-EB-A24D-01 3 14535176 14535176 G A SLC6A6 3'Flank 0.75 TCGA-EB-A24D-01 3 164748616 164748616 T C SI Missense_Mutation p.N926D 0.84 tolerated(0.14) benign(0.019) TCGA-EB-A24D-01 3 172486801 172486801 C T ECT2 Silent p.T432T 0.34 TCGA-EB-A24D-01 3 192993046 192993046 C T ATP13A5 Missense_Mutation p.E1148K 0.44 tolerated(0.94) benign(0.001) TCGA-EB-A24D-01 3 193153533 193153533 C T ATP13A4 Silent p.K891K 0.88 TCGA-EB-A24D-01 3 195782033 195782033 T C TFRC Missense_Mutation p.E606G 0.89 tolerated(0.07) possibly_damaging(0.759) TCGA-EB-A24D-01 3 35770924 35770924 G A ARPP21 Missense_Mutation p.G418E 0.92 tolerated(0.12) benign(0.139) TCGA-EB-A24D-01 3 38592250 38592250 C T SCN5A Silent p.L1871L 0.87 TCGA-EB-A24D-01 3 39185825 39185825 C T CSRNP1 Missense_Mutation p.E195K 0.74 deleterious(0.03) possibly_damaging(0.779) TCGA-EB-A24D-01 3 43760091 43760091 G C ABHD5 3'UTR 0.24 TCGA-EB-A24D-01 3 48698913 48698913 G A CELSR3 Silent p.I385I 0.42 TCGA-EB-A24D-01 3 49008135 49008135 C T ARIH2 Silent p.F256F 0.93 TCGA-EB-A24D-01 3 50431573 50431573 G A CACNA2D2 Silent p.F144F 0.71 TCGA-EB-A24D-01 3 50431574 50431574 A T CACNA2D2 Missense_Mutation p.F144Y 0.70 tolerated(0.25) possibly_damaging(0.669) TCGA-EB-A24D-01 3 52702643 52702643 A C PBRM1 Nonsense_Mutation p.Y85* 0.78 TCGA-EB-A24D-01 3 53219703 53219703 G A PRKCD Silent p.G324G 0.81 TCGA-EB-A24D-01 3 71161711 71161711 C T FOXP1 Silent p.R88R 0.85 TCGA-EB-A24D-01 3 78667155 78667155 C T ROBO1 Silent p.P1304P 0.83 TCGA-EB-A24D-01 4 100237457 100237457 C T ADH1B Missense_Mutation p.D88N 0.46 deleterious(0.01) benign(0.036) TCGA-EB-A24D-01 4 113505255 113505255 G A C4orf21 Missense_Mutation p.P1393S 0.36 tolerated(0.09) possibly_damaging(0.625) TCGA-EB-A24D-01 4 120548342 120548342 G C PDE5A Intron 0.49 TCGA-EB-A24D-01 4 122846271 122846271 G A TRPC3 Silent p.L360L 0.45 TCGA-EB-A24D-01 4 1360164 1360164 C T UVSSA Silent p.V411V 0.34 TCGA-EB-A24D-01 4 1360165 1360165 C T UVSSA Missense_Mutation p.P412S 0.34 deleterious(0) probably_damaging(0.989) TCGA-EB-A24D-01 4 154702764 154702764 A T SFRP2 Missense_Mutation p.L243M 0.34 tolerated(0.09) benign(0.394) TCGA-EB-A24D-01 4 159560473 159560473 C T RXFP1 Missense_Mutation p.L369F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A24D-01 4 164534672 164534672 G A MARCH1 Intron 0.31 TCGA-EB-A24D-01 4 166976365 166976365 G A TLL1 Missense_Mutation p.M554I 0.35 tolerated(0.44) benign(0.013) TCGA-EB-A24D-01 4 184432048 184432048 T A ING2 Missense_Mutation p.N262K 0.37 tolerated(0.22) benign(0.068) TCGA-EB-A24D-01 4 185552973 185552973 G A CASP3 Silent p.F143F 0.52 TCGA-EB-A24D-01 4 186244723 186244723 C T SNX25 Silent p.F342F 0.39 TCGA-EB-A24D-01 4 25806174 25806174 C T SEL1L3 Missense_Mutation p.D589N 0.33 tolerated(0.09) probably_damaging(1) TCGA-EB-A24D-01 4 38690514 38690514 C T KLF3 Silent p.S122S 0.52 TCGA-EB-A24D-01 4 39553641 39553641 G A SMIM14 3'UTR 0.44 TCGA-EB-A24D-01 4 40936716 40936716 C T APBB2 Missense_Mutation p.D370N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 4 42964927 42964927 G A GRXCR1 Missense_Mutation p.E135K 0.40 deleterious(0.03) benign(0.325) TCGA-EB-A24D-01 4 54374252 54374252 C T LNX1 Missense_Mutation p.D175N 0.34 tolerated(0.13) benign(0.003) TCGA-EB-A24D-01 4 55161451 55161451 G A PDGFRA 3'UTR 0.39 TCGA-EB-A24D-01 4 55972913 55972913 C T KDR Missense_Mutation p.G493R 0.45 deleterious(0) possibly_damaging(0.888) TCGA-EB-A24D-01 4 68385046 68385046 A G CENPC Missense_Mutation p.V169A 0.14 tolerated(0.7) benign(0.002) TCGA-EB-A24D-01 4 68424572 68424572 C T STAP1 Silent p.F15F 0.39 TCGA-EB-A24D-01 4 69097044 69097044 C T TMPRSS11B Missense_Mutation p.G188E 0.36 deleterious(0) probably_damaging(0.992) TCGA-EB-A24D-01 4 69681930 69681930 C T UGT2B10 Missense_Mutation p.P65S 0.35 tolerated(0.28) benign(0.159) TCGA-EB-A24D-01 4 69962806 69962806 C T UGT2B7 Missense_Mutation p.P190S 0.35 deleterious(0.02) possibly_damaging(0.523) TCGA-EB-A24D-01 4 70455305 70455305 G A UGT2A1 Nonsense_Mutation p.R623* 0.45 TCGA-EB-A24D-01 4 70512912 70512912 G A UGT2A1 Missense_Mutation p.P151S 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A24D-01 4 70865523 70865523 C T STATH Silent p.F33F 0.14 TCGA-EB-A24D-01 4 71522094 71522094 G A IGJ Silent p.T144T 0.49 TCGA-EB-A24D-01 4 75231042 75231042 G A EREG Missense_Mutation p.R6K 0.43 tolerated_low_confidence(1) benign(0.135) TCGA-EB-A24D-01 4 7780478 7780478 G A AFAP1 Intron 0.44 TCGA-EB-A24D-01 4 81866034 81866034 C T C4orf22 Missense_Mutation p.P200S 0.39 tolerated(0.26) benign(0.022) TCGA-EB-A24D-01 4 81884751 81884751 C T C4orf22 Silent p.S246S 0.27 TCGA-EB-A24D-01 4 85611675 85611675 G A WDFY3 Missense_Mutation p.T3116I 0.39 tolerated(0.18) benign(0.004) TCGA-EB-A24D-01 4 89571022 89571022 C T HERC3 Silent p.I86I 0.32 TCGA-EB-A24D-01 5 10405676 10405676 C T MARCH6 Nonsense_Mutation p.R447* 0.17 TCGA-EB-A24D-01 5 118484982 118484982 C T DMXL1 Silent p.L1154L 0.19 TCGA-EB-A24D-01 5 121488724 121488724 G A ZNF474 Missense_Mutation p.V347I 0.15 deleterious(0) benign(0.201) TCGA-EB-A24D-01 5 134050782 134050782 C T SEC24A Silent p.N932N 0.17 TCGA-EB-A24D-01 5 135188281 135188281 C T SLC25A48 Silent p.F64F 0.15 TCGA-EB-A24D-01 5 135692628 135692628 C T TRPC7 Missense_Mutation p.D150N 0.29 tolerated(0.08) benign(0.388) TCGA-EB-A24D-01 5 138707828 138707828 C T SLC23A1 Missense_Mutation p.R559K 0.21 tolerated(0.66) benign(0.002) TCGA-EB-A24D-01 5 140166773 140166773 G A PCDHA1 Missense_Mutation p.G300R 0.52 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EB-A24D-01 5 140180842 140180842 C T PCDHA3 Silent p.L20L 0.78 TCGA-EB-A24D-01 5 140182967 140182967 G A PCDHA3 Missense_Mutation p.E729K 0.22 deleterious_low_confidence(0.03) benign(0.066) TCGA-EB-A24D-01 5 140256947 140256947 G A PCDHA12 Silent p.E630E 0.71 TCGA-EB-A24D-01 5 140537630 140537630 C T PCDHB17 3'UTR 0.27 TCGA-EB-A24D-01 5 140572167 140572167 C T PCDHB10 Silent p.V14V 0.56 TCGA-EB-A24D-01 5 140573805 140573805 C T PCDHB10 Silent p.F560F 0.31 TCGA-EB-A24D-01 5 140588590 140588590 G A PCDHB12 Silent p.E37E 0.67 TCGA-EB-A24D-01 5 140712475 140712475 G A PCDHGA1 Missense_Mutation p.G742S 0.18 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EB-A24D-01 5 140769536 140769536 C T PCDHGB4 Silent p.A695A 0.17 TCGA-EB-A24D-01 5 140798046 140798046 C T PCDHGB7 Missense_Mutation p.A207V 0.17 tolerated(0.65) benign(0.023) TCGA-EB-A24D-01 5 148715246 148715246 C T AFAP1L1 Silent p.I748I 0.55 TCGA-EB-A24D-01 5 150701509 150701509 G A SLC36A2 Intron 0.67 TCGA-EB-A24D-01 5 153182025 153182025 C T GRIA1 Missense_Mutation p.S842F 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 5 156378734 156378734 G A TIMD4 Silent p.T156T 0.63 TCGA-EB-A24D-01 5 157078445 157078445 C T SOX30 Silent p.T214T 0.69 TCGA-EB-A24D-01 5 162939023 162939023 C T MAT2B Missense_Mutation p.P27S 0.65 tolerated(0.11) benign(0.021) TCGA-EB-A24D-01 5 167642177 167642177 G A TENM2 Silent p.S1326S 0.12 TCGA-EB-A24D-01 5 172659850 172659850 C T NKX2-5 Missense_Mutation p.D233N 0.22 tolerated(0.11) possibly_damaging(0.676) TCGA-EB-A24D-01 5 172659851 172659851 C T NKX2-5 Silent p.G232G 0.22 TCGA-EB-A24D-01 5 176311076 176311076 G A HK3 Silent p.V639V 0.66 TCGA-EB-A24D-01 5 32088933 32088933 C T PDZD2 Silent p.I1793I 0.64 TCGA-EB-A24D-01 5 35991268 35991268 G A UGT3A1 Silent p.I25I 0.53 TCGA-EB-A24D-01 5 39119083 39119083 G A FYB Missense_Mutation p.S775F 0.21 deleterious(0.01) possibly_damaging(0.62) TCGA-EB-A24D-01 5 42718182 42718182 C T GHR Missense_Mutation p.P302S 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 5 462278 462278 C T EXOC3 Silent p.S503S 0.56 TCGA-EB-A24D-01 5 55212490 55212490 G A IL31RA Missense_Mutation p.E613K 0.25 tolerated(0.15) benign(0.067) TCGA-EB-A24D-01 5 55422854 55422854 C T ANKRD55 Missense_Mutation p.G231E 0.57 deleterious(0.02) probably_damaging(1) TCGA-EB-A24D-01 5 65466563 65466563 C G SREK1 Missense_Mutation p.D424E 0.73 tolerated(0.14) unknown(0) TCGA-EB-A24D-01 5 65466564 65466564 C T SREK1 Missense_Mutation p.R425W 0.67 deleterious(0) unknown(0) TCGA-EB-A24D-01 5 82940241 82940241 C T HAPLN1 Missense_Mutation p.G239E 0.69 deleterious(0) probably_damaging(0.999) TCGA-EB-A24D-01 5 89924546 89924546 T C GPR98 Missense_Mutation p.L469P 0.25 possibly_damaging(0.902) TCGA-EB-A24D-01 5 9044626 9044626 G A SEMA5A Silent p.L988L 0.65 TCGA-EB-A24D-01 5 94353135 94353135 G A MCTP1 Silent p.P258P 0.59 TCGA-EB-A24D-01 6 10770427 10770427 C T MAK Missense_Mutation p.G545E 0.62 deleterious(0.01) possibly_damaging(0.558) TCGA-EB-A24D-01 6 117245947 117245947 G A RFX6 Silent p.K557K 0.67 TCGA-EB-A24D-01 6 117246782 117246782 C T RFX6 Silent p.H615H 0.76 TCGA-EB-A24D-01 6 152621837 152621837 G A SYNE1 Missense_Mutation p.S5874F 0.82 probably_damaging(0.981) TCGA-EB-A24D-01 6 155469324 155469324 G A TIAM2 Silent p.G628G 0.73 TCGA-EB-A24D-01 6 167786842 167786842 G A TCP10 Missense_Mutation p.P266S 0.29 tolerated(0.47) benign(0.118) TCGA-EB-A24D-01 6 24654655 24654655 G A TDP2 Silent p.N207N 0.17 TCGA-EB-A24D-01 6 27799023 27799023 C T HIST1H4K Missense_Mutation p.G95S 0.33 deleterious(0.03) possibly_damaging(0.73) TCGA-EB-A24D-01 6 30515258 30515258 C A GNL1 Silent p.R383R 0.58 TCGA-EB-A24D-01 6 31084770 31084770 C A CDSN Missense_Mutation p.G208C 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A24D-01 6 35480623 35480623 C T TULP1 Missense_Mutation p.D5N 0.35 tolerated_low_confidence(0.07) benign(0.007) TCGA-EB-A24D-01 6 36262129 36262129 G A PNPLA1 Missense_Mutation p.E223K 0.36 deleterious(0.03) probably_damaging(0.975) TCGA-EB-A24D-01 6 38312841 38312841 T C BTBD9 Missense_Mutation p.T395A 0.13 deleterious(0.04) possibly_damaging(0.523) TCGA-EB-A24D-01 6 41001787 41001787 G A UNC5CL Silent p.F173F 0.13 TCGA-EB-A24D-01 6 41740577 41740577 G A FRS3 Missense_Mutation p.P125L 0.51 tolerated(0.06) benign(0.293) TCGA-EB-A24D-01 6 43322813 43322813 T A ZNF318 Silent p.P753P 0.26 TCGA-EB-A24D-01 6 43638590 43638590 G A RSPH9 Missense_Mutation p.G263R 0.61 tolerated_low_confidence(0.99) benign(0.006) TCGA-EB-A24D-01 6 43638591 43638591 G A RSPH9 Missense_Mutation p.G263E 0.60 tolerated_low_confidence(0.28) benign(0.213) TCGA-EB-A24D-01 6 47675986 47675986 A G GPR115 Silent p.E40E 0.37 TCGA-EB-A24D-01 6 5368854 5368854 G A FARS2 Silent p.V17V 0.53 TCGA-EB-A24D-01 6 6589038 6589038 G A LY86 Missense_Mutation p.G24E 0.12 tolerated(0.41) benign(0.018) TCGA-EB-A24D-01 6 7230953 7230953 C T RREB1 Missense_Mutation p.P874L 0.60 tolerated(0.06) benign(0.209) TCGA-EB-A24D-01 6 7365709 7365709 C T CAGE1 Missense_Mutation p.D729N 0.28 tolerated(0.22) probably_damaging(0.981) TCGA-EB-A24D-01 6 7583514 7583514 G A DSP Missense_Mutation p.E2007K 0.63 benign(0.05) TCGA-EB-A24D-01 6 7584759 7584759 G A DSP Missense_Mutation p.E2422K 0.63 probably_damaging(0.977) TCGA-EB-A24D-01 6 84234442 84234442 G A PRSS35 3'UTR 0.90 TCGA-EB-A24D-01 6 94066482 94066482 C T EPHA7 Missense_Mutation p.R426Q 0.74 tolerated(0.17) possibly_damaging(0.53) TCGA-EB-A24D-01 7 100320699 100320699 C T EPO Silent p.F175F 0.59 TCGA-EB-A24D-01 7 100866992 100866992 C T ZNHIT1 Silent p.A104A 0.47 TCGA-EB-A24D-01 7 101845040 101845040 G A CUX1 Silent p.K832K 0.22 TCGA-EB-A24D-01 7 107674720 107674720 C T LAMB4 Missense_Mutation p.G1584E 0.57 tolerated(0.27) possibly_damaging(0.642) TCGA-EB-A24D-01 7 111958317 111958317 C T ZNF277 Silent p.F182F 0.30 TCGA-EB-A24D-01 7 116166591 116166591 A G CAV1 Missense_Mutation p.T15A 0.47 tolerated_low_confidence(0.14) benign(0.003) TCGA-EB-A24D-01 7 116339776 116339776 C T MET Missense_Mutation p.S213L 0.36 deleterious(0) probably_damaging(0.997) TCGA-EB-A24D-01 7 123092855 123092855 C T IQUB Nonsense_Mutation p.W773* 0.55 TCGA-EB-A24D-01 7 123150081 123150081 C A IQUB Missense_Mutation p.V136L 0.29 tolerated(0.18) benign(0.015) TCGA-EB-A24D-01 7 123593820 123593820 G A SPAM1 Missense_Mutation p.E66K 0.33 tolerated(0.57) benign(0.035) TCGA-EB-A24D-01 7 126544086 126544086 G A GRM8 Nonsense_Mutation p.Q320* 0.31 TCGA-EB-A24D-01 7 129019571 129019571 T C AHCYL2 Silent p.S152S 0.55 TCGA-EB-A24D-01 7 133943125 133943125 C T LRGUK Missense_Mutation p.A772V 0.54 tolerated(0.33) benign(0) TCGA-EB-A24D-01 7 133943126 133943126 C T LRGUK Silent p.A772A 0.55 TCGA-EB-A24D-01 7 134254185 134254185 G A AKR1B15 Silent p.E113E 0.54 TCGA-EB-A24D-01 7 136699707 136699707 C T CHRM2 Missense_Mutation p.S32F 0.25 tolerated(0.07) probably_damaging(0.942) TCGA-EB-A24D-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.51 deleterious(0) benign(0.411) TCGA-EB-A24D-01 7 140501337 140501337 T G BRAF Missense_Mutation p.L245F 0.49 deleterious(0) probably_damaging(0.995) TCGA-EB-A24D-01 7 141536192 141536192 G A PRSS37 3'UTR 0.33 TCGA-EB-A24D-01 7 141797419 141797419 C T MGAM Silent p.F1677F 0.54 TCGA-EB-A24D-01 7 150648062 150648062 C T KCNH2 Missense_Mutation p.E698K 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 7 150775018 150775018 G A FASTK Silent p.P329P 0.26 TCGA-EB-A24D-01 7 151135093 151135093 G A CRYGN Missense_Mutation p.P87S 0.35 deleterious(0.01) probably_damaging(1) TCGA-EB-A24D-01 7 151478268 151478268 C T PRKAG2 Missense_Mutation p.G146S 0.23 tolerated_low_confidence(0.62) benign(0.114) TCGA-EB-A24D-01 7 157931004 157931004 G A PTPRN2 Missense_Mutation p.R372C 0.33 tolerated(0.06) benign(0.238) TCGA-EB-A24D-01 7 158473481 158473481 T C NCAPG2 Missense_Mutation p.K318E 0.31 tolerated(0.12) benign(0.048) TCGA-EB-A24D-01 7 20449622 20449622 A T ITGB8 3'UTR 0.53 TCGA-EB-A24D-01 7 20683112 20683112 G A ABCB5 Missense_Mutation p.G179R 0.13 deleterious(0) probably_damaging(0.998) TCGA-EB-A24D-01 7 38393474 38393474 G A TRGV4 Silent p.L66L 0.20 TCGA-EB-A24D-01 7 42005858 42005858 C T GLI3 Missense_Mutation p.G938E 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 7 42005859 42005859 C T GLI3 Missense_Mutation p.G938R 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 7 44191917 44191917 G A GCK Nonsense_Mutation p.Q107* 0.32 TCGA-EB-A24D-01 7 44191918 44191918 G A GCK Silent p.H106H 0.32 TCGA-EB-A24D-01 7 44578652 44578652 C T NPC1L1 Silent p.Q448Q 0.43 TCGA-EB-A24D-01 7 45725619 45725619 C T ADCY1 Missense_Mutation p.S711L 0.66 tolerated(0.23) benign(0.001) TCGA-EB-A24D-01 7 48335455 48335455 G T ABCA13 Missense_Mutation p.L3038F 0.30 benign(0.075) TCGA-EB-A24D-01 7 48335456 48335456 T G ABCA13 Missense_Mutation p.Y3039D 0.29 benign(0) TCGA-EB-A24D-01 7 48559759 48559759 C T ABCA13 Silent p.F4640F 0.30 TCGA-EB-A24D-01 7 51096349 51096349 G A COBL Missense_Mutation p.S815L 0.24 tolerated(0.41) benign(0) TCGA-EB-A24D-01 7 6624884 6624884 T C ZDHHC4 Missense_Mutation p.L245P 0.43 deleterious(0) probably_damaging(0.993) TCGA-EB-A24D-01 7 66413654 66413654 C T TMEM248 Missense_Mutation p.A190V 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A24D-01 7 66413655 66413655 C T TMEM248 Silent p.A190A 0.41 TCGA-EB-A24D-01 7 66703421 66703421 C T TYW1 Missense_Mutation p.H702Y 0.50 tolerated(0.45) benign(0.002) TCGA-EB-A24D-01 7 73245447 73245447 C T CLDN4 5'UTR 0.40 TCGA-EB-A24D-01 7 73280093 73280093 G A WBSCR28 Missense_Mutation p.E230K 0.56 deleterious(0.03) benign(0.024) TCGA-EB-A24D-01 7 76063364 76063364 C G ZP3 Silent p.V241V 0.29 TCGA-EB-A24D-01 7 82585272 82585272 C T PCLO Missense_Mutation p.R1666Q 0.51 unknown(0) TCGA-EB-A24D-01 7 82785179 82785179 C T PCLO Missense_Mutation p.G260S 0.41 unknown(0) TCGA-EB-A24D-01 7 82785180 82785180 C T PCLO Silent p.Q259Q 0.42 TCGA-EB-A24D-01 7 87399955 87399955 G A RUNDC3B Missense_Mutation p.E247K 0.57 deleterious(0.04) possibly_damaging(0.536) TCGA-EB-A24D-01 7 92826826 92826826 G A HEPACAM2 Silent p.F370F 0.33 TCGA-EB-A24D-01 8 100999713 100999713 G A RGS22 Silent p.L1051L 0.21 TCGA-EB-A24D-01 8 107782392 107782392 C T ABRA Silent p.G9G 0.13 TCGA-EB-A24D-01 8 113308134 113308134 G A CSMD3 Nonsense_Mutation p.R2848* 0.40 TCGA-EB-A24D-01 8 11705270 11705270 G C CTSB Missense_Mutation p.C198W 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 8 121211734 121211734 G A COL14A1 Missense_Mutation p.G269E 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 8 123964338 123964338 C T ZHX2 Silent p.A196A 0.15 TCGA-EB-A24D-01 8 124232387 124232387 G A C8orf76 Missense_Mutation p.P367S 0.34 tolerated(0.96) benign(0.021) TCGA-EB-A24D-01 8 131848660 131848660 G A ADCY8 Silent p.T846T 0.34 TCGA-EB-A24D-01 8 131880102 131880102 G A ADCY8 Missense_Mutation p.P734S 0.23 tolerated(0.08) benign(0) TCGA-EB-A24D-01 8 139149490 139149490 A T FAM135B Missense_Mutation p.F1305L 0.09 deleterious(0.01) possibly_damaging(0.651) TCGA-EB-A24D-01 8 139668175 139668175 G C COL22A1 Missense_Mutation p.L1100V 0.10 unknown(0) TCGA-EB-A24D-01 8 143694666 143694666 G A ARC Nonsense_Mutation p.Q323* 0.65 TCGA-EB-A24D-01 8 143745833 143745833 G A JRK RNA 0.13 TCGA-EB-A24D-01 8 144332684 144332684 C T ZFP41 3'UTR 0.49 TCGA-EB-A24D-01 8 144522285 144522285 G C ZC3H3 Missense_Mutation p.S914C 0.10 deleterious(0) possibly_damaging(0.903) TCGA-EB-A24D-01 8 144672147 144672147 C T EEF1D Silent p.A35A 0.11 TCGA-EB-A24D-01 8 145748575 145748575 C T LRRC24 Missense_Mutation p.D276N 0.18 tolerated(0.57) benign(0.071) TCGA-EB-A24D-01 8 145748576 145748576 C T LRRC24 Silent p.E275E 0.18 TCGA-EB-A24D-01 8 17206511 17206511 C T MTMR7 Missense_Mutation p.R183Q 0.45 deleterious(0) probably_damaging(0.981) TCGA-EB-A24D-01 8 20005534 20005534 C T SLC18A1 Silent p.G398G 0.36 TCGA-EB-A24D-01 8 24346676 24346676 C T ADAM7 Missense_Mutation p.P366S 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-EB-A24D-01 8 27098674 27098674 G A STMN4 Missense_Mutation p.S99F 0.50 deleterious(0) possibly_damaging(0.889) TCGA-EB-A24D-01 8 27737098 27737098 G A SCARA5 Nonsense_Mutation p.R447* 0.43 TCGA-EB-A24D-01 8 30704952 30704952 C T TEX15 Missense_Mutation p.E528K 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-EB-A24D-01 8 33454889 33454889 C T DUSP26 Missense_Mutation p.E49K 0.34 deleterious(0.02) probably_damaging(0.983) TCGA-EB-A24D-01 8 35583765 35583765 G A UNC5D Missense_Mutation p.E467K 0.49 tolerated(0.64) probably_damaging(0.971) TCGA-EB-A24D-01 8 38065273 38065273 C T BAG4 Missense_Mutation p.P208S 0.61 tolerated(0.35) benign(0.023) TCGA-EB-A24D-01 8 39679138 39679138 G A ADAM2 Missense_Mutation p.S104F 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 8 48883220 48883220 C A MCM4 Silent p.P528P 0.42 TCGA-EB-A24D-01 8 54141918 54141918 C T OPRK1 Missense_Mutation p.R361Q 0.47 tolerated(0.06) benign(0.003) TCGA-EB-A24D-01 8 55540055 55540055 C T RP1 Missense_Mutation p.P1205S 0.45 tolerated(0.12) benign(0.098) TCGA-EB-A24D-01 8 55540307 55540307 G A RP1 Missense_Mutation p.D1289N 0.39 tolerated(0.1) benign(0.063) TCGA-EB-A24D-01 8 55540643 55540643 C T RP1 Missense_Mutation p.L1401F 0.24 tolerated(0.42) benign(0.004) TCGA-EB-A24D-01 8 55542301 55542301 G A RP1 Missense_Mutation p.M1953I 0.39 tolerated(0.07) benign(0.276) TCGA-EB-A24D-01 8 68140256 68140256 C T ARFGEF1 Missense_Mutation p.G1178E 0.09 tolerated(0.2) possibly_damaging(0.887) TCGA-EB-A24D-01 8 68981287 68981287 C T PREX2 Silent p.F453F 0.31 TCGA-EB-A24D-01 8 82571616 82571616 A C IMPA1 Silent p.V327V 0.37 TCGA-EB-A24D-01 8 82571617 82571617 A C IMPA1 Missense_Mutation p.V327G 0.38 tolerated(0.34) benign(0.158) TCGA-EB-A24D-01 8 95186112 95186112 G A CDH17 Silent p.I232I 0.46 TCGA-EB-A24D-01 8 99441224 99441224 G A KCNS2 Silent p.G339G 0.38 TCGA-EB-A24D-01 9 101585614 101585614 T C GALNT12 Missense_Mutation p.S150P 0.68 deleterious(0) probably_damaging(0.994) TCGA-EB-A24D-01 9 101777809 101777809 C T COL15A1 Silent p.P488P 0.50 TCGA-EB-A24D-01 9 101778395 101778395 C T COL15A1 Silent p.I547I 0.61 TCGA-EB-A24D-01 9 107267446 107267446 G A OR13F1 Silent p.L301L 0.59 TCGA-EB-A24D-01 9 107515294 107515294 G C NIPSNAP3A Missense_Mutation p.E127Q 0.56 deleterious(0.02) probably_damaging(0.925) TCGA-EB-A24D-01 9 112694228 112694228 C T PALM2-AKAP2 Missense_Mutation p.S139F 0.26 deleterious(0.04) possibly_damaging(0.563) TCGA-EB-A24D-01 9 112900676 112900676 C T PALM2-AKAP2 Missense_Mutation p.S951F 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A24D-01 9 113449505 113449505 G A MUSK Silent p.V105V 0.45 TCGA-EB-A24D-01 9 114905867 114905867 T C SUSD1 Missense_Mutation p.H137R 0.11 tolerated(0.31) benign(0.005) TCGA-EB-A24D-01 9 121976125 121976125 C T BRINP1 Intron 0.25 TCGA-EB-A24D-01 9 126214555 126214555 G A DENND1A Silent p.F433F 0.26 TCGA-EB-A24D-01 9 129958901 129958901 C T RALGPS1 Missense_Mutation p.L396F 0.46 tolerated(0.55) benign(0.14) TCGA-EB-A24D-01 9 130885305 130885305 G A PTGES2 Silent p.V265V 0.32 TCGA-EB-A24D-01 9 131669831 131669831 C T LRRC8A Missense_Mutation p.L130F 0.26 tolerated(0.09) probably_damaging(0.995) TCGA-EB-A24D-01 9 136523475 136523475 C T DBH Missense_Mutation p.S587F 0.21 tolerated(0.68) possibly_damaging(0.463) TCGA-EB-A24D-01 9 137707809 137707809 G A COL5A1 Missense_Mutation p.G1366E 0.43 unknown(0) TCGA-EB-A24D-01 9 138377022 138377022 C T PPP1R26 Silent p.F222F 0.29 TCGA-EB-A24D-01 9 138516118 138516118 G A GLT6D1 Missense_Mutation p.P219L 0.27 deleterious(0.01) possibly_damaging(0.57) TCGA-EB-A24D-01 9 139272216 139272216 G A SNAPC4 Missense_Mutation p.L1355F 0.59 tolerated(0.08) benign(0.088) TCGA-EB-A24D-01 9 139929162 139929162 C T C9orf139 Missense_Mutation p.P77S 0.18 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EB-A24D-01 9 141070218 141070218 C T TUBBP5 Intron 0.44 TCGA-EB-A24D-01 9 14720328 14720328 C T CER1 Silent p.G188G 0.74 TCGA-EB-A24D-01 9 20988359 20988359 G A FOCAD Silent p.L1645L 0.43 TCGA-EB-A24D-01 9 35697642 35697642 G A TLN1 3'UTR 0.75 TCGA-EB-A24D-01 9 70177887 70177887 C T FOXD4L5 Missense_Mutation p.E33K 0.36 deleterious_low_confidence(0.01) benign(0.211) TCGA-EB-A24D-01 9 75781074 75781074 G A ANXA1 Silent p.L256L 0.34 TCGA-EB-A24D-01 9 84607212 84607212 C T SPATA31D1 Silent p.P609P 0.53 TCGA-EB-A24D-01 9 92220903 92220903 G C GADD45G Missense_Mutation p.W130S 0.15 deleterious(0.01) possibly_damaging(0.646) TCGA-EB-A24D-01 9 96323390 96323390 G A FAM120A Splice_Site p.X936_splice 0.25 TCGA-EB-A24D-01 9 97177485 97177485 A G HIATL1 Missense_Mutation p.I52V 0.18 deleterious(0.02) benign(0.393) TCGA-EB-A24D-01 9 99798970 99798970 G A CTSV Silent p.F152F 0.55 TCGA-EB-A24D-01 X 101096040 101096040 C T NXF5 Missense_Mutation p.R143Q 0.42 tolerated(0.1) benign(0.017) TCGA-EB-A24D-01 X 117526679 117526679 G T WDR44 Missense_Mutation p.D91Y 0.88 deleterious_low_confidence(0.03) benign(0.181) TCGA-EB-A24D-01 X 122767863 122767863 C T THOC2 Missense_Mutation p.E693K 0.82 deleterious(0) benign(0.176) TCGA-EB-A24D-01 X 13337364 13337364 C T ATXN3L Silent p.Q230Q 0.84 TCGA-EB-A24D-01 X 139037987 139037987 G A CXorf66 3'UTR 0.89 TCGA-EB-A24D-01 X 140969345 140969345 G A MAGEC3 Missense_Mutation p.M224I 0.85 tolerated(0.41) benign(0) TCGA-EB-A24D-01 X 149963941 149963941 G A CD99L2 Missense_Mutation p.T99I 0.81 tolerated(0.06) probably_damaging(0.958) TCGA-EB-A24D-01 X 151304141 151304141 G A MAGEA10 5'UTR 0.85 TCGA-EB-A24D-01 X 152860083 152860083 G A FAM58A Silent p.L115L 0.94 TCGA-EB-A24D-01 X 3030306 3030306 C T ARSF Silent p.F494F 0.82 TCGA-EB-A24D-01 X 3243014 3243014 T A MXRA5 Missense_Mutation p.I238F 0.93 deleterious(0) possibly_damaging(0.736) TCGA-EB-A24D-01 X 34149691 34149691 G A FAM47A Silent p.L235L 0.78 TCGA-EB-A24D-01 X 37027692 37027692 C T FAM47C Silent p.F403F 0.84 TCGA-EB-A24D-01 X 47271947 47271947 G A ZNF157 Missense_Mutation p.D159N 0.94 deleterious(0.02) benign(0.002) TCGA-EB-A24D-01 X 53277939 53277939 C T IQSEC2 Missense_Mutation p.G808E 0.90 deleterious(0) probably_damaging(1) TCGA-EB-A24D-01 X 55650362 55650362 C T FOXR2 Missense_Mutation p.P73L 0.77 tolerated(0.16) benign(0.001) TCGA-EB-A24D-01 X 63551549 63551549 G A MTMR8 Missense_Mutation p.P414S 0.77 deleterious(0.04) benign(0.35) TCGA-EB-A24D-01 X 65476031 65476031 C T HEPH Missense_Mutation p.R973W 0.85 deleterious(0.01) possibly_damaging(0.88) TCGA-EB-A24D-01 X 69479145 69479145 G A P2RY4 Silent p.F110F 0.78 TCGA-EB-A24D-01 X 73751372 73751372 C T SLC16A2 Missense_Mutation p.P535L 0.52 tolerated(0.31) benign(0.006) TCGA-EB-A299-01 10 115618341 115618341 G A NHLRC2 Missense_Mutation p.G78E 0.37 deleterious(0) probably_damaging(0.976) TCGA-EB-A299-01 10 118354289 118354289 G A PNLIPRP1 Silent p.K126K 0.36 TCGA-EB-A299-01 10 124402684 124402684 C T DMBT1 Missense_Mutation p.R2338C 0.24 deleterious(0.02) probably_damaging(0.912) TCGA-EB-A299-01 10 135025254 135025254 G A KNDC1 Silent p.E1376E 0.19 TCGA-EB-A299-01 10 27301996 27301996 C T ANKRD26 Missense_Mutation p.E1590K 0.29 tolerated(0.08) benign(0.024) TCGA-EB-A299-01 10 27301997 27301997 C T ANKRD26 Silent p.V1589V 0.29 TCGA-EB-A299-01 10 3191935 3191935 G T PITRM1 Silent p.I583I 0.19 TCGA-EB-A299-01 10 47087185 47087185 C T NPY4R Silent p.L134L 0.14 TCGA-EB-A299-01 10 5139644 5139644 C T AKR1C3 Nonsense_Mutation p.R91* 0.41 TCGA-EB-A299-01 10 69565428 69565428 C A DNAJC12 Nonsense_Mutation p.E139* 0.43 TCGA-EB-A299-01 10 95385332 95385332 G A PDE6C Missense_Mutation p.E289K 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A299-01 10 98105587 98105587 G A OPALIN 3'UTR 0.33 TCGA-EB-A299-01 11 124180013 124180013 G A OR8D1 Missense_Mutation p.S217F 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 11 133714222 133714222 T G SPATA19 Missense_Mutation p.H93P 0.09 tolerated(0.22) benign(0.021) TCGA-EB-A299-01 11 43345121 43345121 C T API5 Missense_Mutation p.P229S 0.31 tolerated(0.07) benign(0.297) TCGA-EB-A299-01 11 43345122 43345122 C T API5 Missense_Mutation p.P229L 0.30 deleterious(0.03) benign(0.378) TCGA-EB-A299-01 11 57970832 57970832 G A OR1S2 Silent p.F274F 0.29 TCGA-EB-A299-01 11 64359091 64359091 G A SLC22A12 Silent p.T21T 0.30 TCGA-EB-A299-01 11 6867792 6867792 G A OR10A5 Silent p.L293L 0.29 TCGA-EB-A299-01 11 6943038 6943038 G A OR2D3 Missense_Mutation p.G269E 0.31 deleterious(0) probably_damaging(0.977) TCGA-EB-A299-01 11 70336421 70336421 C T SHANK2 Silent p.L838L 0.31 TCGA-EB-A299-01 11 7111240 7111240 G A RBMXL2 Missense_Mutation p.G297R 0.19 tolerated(0.07) benign(0) TCGA-EB-A299-01 11 93103239 93103239 G A CCDC67 Missense_Mutation p.E145K 0.65 deleterious(0.05) probably_damaging(0.987) TCGA-EB-A299-01 11 94731342 94731342 G A KDM4D Missense_Mutation p.G269E 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 12 104054484 104054484 C T STAB2 Silent p.S604S 0.36 TCGA-EB-A299-01 12 124831179 124831179 G A NCOR2 Silent p.R1430R 0.29 TCGA-EB-A299-01 12 133384717 133384717 T C GOLGA3 Missense_Mutation p.N313S 0.28 tolerated_low_confidence(0.36) possibly_damaging(0.615) TCGA-EB-A299-01 12 45410273 45410273 G A DBX2 Silent p.F272F 0.33 TCGA-EB-A299-01 12 57573125 57573125 C T LRP1 Silent p.F1584F 0.20 TCGA-EB-A299-01 12 6030385 6030385 G A ANO2 Missense_Mutation p.P115S 0.41 tolerated(0.33) probably_damaging(0.917) TCGA-EB-A299-01 12 78443775 78443775 G A NAV3 Missense_Mutation p.E676K 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A299-01 12 86373699 86373699 G A MGAT4C Missense_Mutation p.L269F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A299-01 12 91449722 91449722 C T KERA Missense_Mutation p.E113K 0.33 tolerated(0.19) benign(0.099) TCGA-EB-A299-01 13 103309445 103309445 A T TPP2 Missense_Mutation p.T998S 0.13 tolerated(0.6) benign(0.002) TCGA-EB-A299-01 13 103309446 103309446 C T TPP2 Missense_Mutation p.T998I 0.12 tolerated(0.18) benign(0.001) TCGA-EB-A299-01 13 114531609 114531609 C G GAS6 Missense_Mutation p.G407R 0.21 tolerated(0.1) probably_damaging(1) TCGA-EB-A299-01 13 115089945 115089945 C T CHAMP1 Missense_Mutation p.P210S 0.20 tolerated(0.53) benign(0.1) TCGA-EB-A299-01 13 48611944 48611944 C T NUDT15 Missense_Mutation p.T21I 0.35 tolerated(0.4) benign(0.41) TCGA-EB-A299-01 13 48611945 48611945 C T NUDT15 Silent p.T21T 0.38 TCGA-EB-A299-01 13 52440238 52440238 C T CCDC70 3'UTR 0.27 TCGA-EB-A299-01 13 97485276 97485276 C T HS6ST3 Missense_Mutation p.L414F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A299-01 14 21792841 21792841 C T RPGRIP1 Silent p.A609A 0.27 TCGA-EB-A299-01 14 65220430 65220430 C T SPTB Missense_Mutation p.G2143R 0.34 tolerated(0.46) benign(0.001) TCGA-EB-A299-01 14 70633654 70633654 C T SLC8A3 Missense_Mutation p.E496K 0.28 tolerated(0.58) benign(0.444) TCGA-EB-A299-01 14 96707538 96707538 C T BDKRB2 Silent p.F291F 0.27 TCGA-EB-A299-01 15 20710730 20710730 C T HERC2P3 RNA 0.25 TCGA-EB-A299-01 15 52901928 52901928 G A FAM214A Missense_Mutation p.P395S 0.24 tolerated(0.24) benign(0.041) TCGA-EB-A299-01 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.13 tolerated(0.08) probably_damaging(0.913) TCGA-EB-A299-01 16 20996572 20996572 C T DNAH3 Missense_Mutation p.D2498N 0.24 tolerated(0.06) probably_damaging(0.911) TCGA-EB-A299-01 16 23085100 23085100 G A USP31 Missense_Mutation p.L760F 0.27 deleterious(0) possibly_damaging(0.656) TCGA-EB-A299-01 16 31734610 31734610 C T ZNF720 Silent p.T54T 0.18 TCGA-EB-A299-01 16 3641157 3641157 C T SLX4 Missense_Mutation p.E828K 0.39 tolerated(0.13) probably_damaging(0.998) TCGA-EB-A299-01 16 4408077 4408077 G A CORO7 Missense_Mutation p.P829S 0.23 deleterious(0.02) probably_damaging(1) TCGA-EB-A299-01 16 70841912 70841912 G A HYDIN Silent p.G4979G 0.34 TCGA-EB-A299-01 16 71570920 71570920 G A CHST4 Missense_Mutation p.E114K 0.42 tolerated(1) benign(0.002) TCGA-EB-A299-01 16 726311 726311 C T RHBDL1 Silent p.A70A 0.42 TCGA-EB-A299-01 16 77918601 77918601 C T VAT1L Missense_Mutation p.R327W 0.12 deleterious(0) possibly_damaging(0.809) TCGA-EB-A299-01 17 10424496 10424496 C T MYH2 3'UTR 0.31 TCGA-EB-A299-01 17 10433319 10433319 T C MYH2 Missense_Mutation p.K924E 0.30 deleterious(0.01) possibly_damaging(0.908) TCGA-EB-A299-01 17 34233603 34233603 G A AC015849.16 RNA 0.20 TCGA-EB-A299-01 17 36482717 36482717 C T GPR179 Silent p.E2245E 0.26 TCGA-EB-A299-01 17 48750479 48750479 G A ABCC3 Missense_Mutation p.E797K 0.32 tolerated(0.9) possibly_damaging(0.77) TCGA-EB-A299-01 17 56540534 56540534 G A HSF5 Missense_Mutation p.S384F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A299-01 17 62226432 62226432 T G TEX2 Missense_Mutation p.N1101T 0.50 deleterious(0) possibly_damaging(0.771) TCGA-EB-A299-01 17 6979192 6979192 C T CLEC10A Missense_Mutation p.G178E 0.34 tolerated(0.88) benign(0.004) TCGA-EB-A299-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 17 7577540 7577540 G A TP53 Silent p.N247N 0.23 TCGA-EB-A299-01 17 76497216 76497216 G A DNAH17-AS1 3'UTR 0.39 TCGA-EB-A299-01 18 28906914 28906914 C T DSG1 Silent p.F54F 0.48 TCGA-EB-A299-01 18 46468900 46468900 G A SMAD7 Silent p.S231S 0.44 TCGA-EB-A299-01 19 12257028 12257028 C T ZNF625 Missense_Mutation p.G68E 0.15 tolerated(0.41) probably_damaging(0.998) TCGA-EB-A299-01 19 13397387 13397387 C T CACNA1A Silent p.R1161R 0.45 TCGA-EB-A299-01 19 1434818 1434818 C T DAZAP1 Silent p.S377S 0.33 TCGA-EB-A299-01 19 18652792 18652792 G A FKBP8 5'UTR 0.19 TCGA-EB-A299-01 19 18727834 18727834 G A TMEM59L Missense_Mutation p.G196S 0.14 tolerated(0.68) benign(0.082) TCGA-EB-A299-01 19 22155631 22155631 G A ZNF208 Silent p.V735V 0.33 TCGA-EB-A299-01 19 36166795 36166795 C T UPK1A Silent p.A174A 0.23 TCGA-EB-A299-01 19 3785158 3785158 G A MATK Intron 0.19 TCGA-EB-A299-01 19 43243130 43243130 G A PSG3 Missense_Mutation p.P59L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 19 44635878 44635878 C T ZNF225 Missense_Mutation p.P371S 0.38 tolerated(0.07) probably_damaging(1) TCGA-EB-A299-01 19 44892134 44892134 G A ZNF285 Silent p.I91I 0.23 TCGA-EB-A299-01 19 49000720 49000720 C A LMTK3 Missense_Mutation p.R1231S 0.26 unknown(0) TCGA-EB-A299-01 19 50385510 50385510 G A TBC1D17 Silent p.Q217Q 0.12 TCGA-EB-A299-01 19 50385511 50385511 G A TBC1D17 Missense_Mutation p.D218N 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 19 54318189 54318189 C T NLRP12 Missense_Mutation p.E115K 0.43 tolerated(0.4) benign(0.005) TCGA-EB-A299-01 19 54818745 54818745 G A LILRA5 Nonsense_Mutation p.Q285* 0.36 TCGA-EB-A299-01 19 55854219 55854219 G A SUV420H2 Nonsense_Mutation p.W129* 0.30 TCGA-EB-A299-01 19 7830729 7830729 C T CLEC4M Silent p.T140T 0.26 TCGA-EB-A299-01 19 884974 884974 A T MED16 Missense_Mutation p.I305N 0.42 deleterious(0.02) possibly_damaging(0.46) TCGA-EB-A299-01 19 9087881 9087881 C T MUC16 Missense_Mutation p.E1312K 0.20 unknown(0) TCGA-EB-A299-01 1 110051061 110051061 G A AMIGO1 Silent p.A158A 0.35 TCGA-EB-A299-01 1 12854230 12854230 G A PRAMEF1 Missense_Mutation p.D152N 0.31 deleterious(0.03) benign(0.255) TCGA-EB-A299-01 1 145367820 145367820 C T NBPF10 Silent p.P3472P 0.15 TCGA-EB-A299-01 1 158450564 158450564 G A OR10R2 Silent p.T299T 0.48 TCGA-EB-A299-01 1 166891843 166891843 T A ILDR2 Missense_Mutation p.S400C 0.25 deleterious(0.02) possibly_damaging(0.713) TCGA-EB-A299-01 1 166891849 166891849 G A ILDR2 Nonsense_Mutation p.R398* 0.26 TCGA-EB-A299-01 1 168065750 168065750 G A GPR161 Silent p.I385I 0.31 TCGA-EB-A299-01 1 169493087 169493087 C T F5 Nonsense_Mutation p.W1948* 0.34 TCGA-EB-A299-01 1 171251405 171251405 C T FMO1 Silent p.I372I 0.29 TCGA-EB-A299-01 1 1722013 1722013 C T GNB1 Missense_Mutation p.G174S 0.12 tolerated(0.08) possibly_damaging(0.454) TCGA-EB-A299-01 1 190068163 190068163 G A BRINP3 Missense_Mutation p.P429L 0.38 deleterious(0.04) benign(0.089) TCGA-EB-A299-01 1 19433196 19433196 G A UBR4 Missense_Mutation p.P4087L 0.34 benign(0.041) TCGA-EB-A299-01 1 201839883 201839883 C T IPO9 Missense_Mutation p.T769I 0.13 tolerated(0.4) benign(0.099) TCGA-EB-A299-01 1 235922514 235922514 T G LYST Silent p.S2213S 0.27 TCGA-EB-A299-01 1 237921070 237921070 A G RYR2 Silent p.V3773V 0.29 TCGA-EB-A299-01 1 237921071 237921071 C T RYR2 Nonsense_Mutation p.Q3774* 0.30 TCGA-EB-A299-01 1 247614472 247614472 G A OR2B11 Silent p.S271S 0.36 TCGA-EB-A299-01 1 26509700 26509700 C T CNKSR1 Missense_Mutation p.H213Y 0.28 tolerated(1) benign(0.002) TCGA-EB-A299-01 1 34174812 34174812 G A CSMD2 Silent p.S1111S 0.28 TCGA-EB-A299-01 1 35853067 35853067 C T ZMYM4 Nonsense_Mutation p.Q709* 0.28 TCGA-EB-A299-01 1 45270368 45270368 G A PLK3 Missense_Mutation p.V518M 0.10 tolerated(0.23) benign(0.021) TCGA-EB-A299-01 1 900534 900534 C T KLHL17 Missense_Mutation p.S631F 0.47 deleterious(0) unknown(0) TCGA-EB-A299-01 20 3655477 3655477 C T ADAM33 Missense_Mutation p.G118E 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A299-01 20 60574057 60574057 G A TAF4 Silent p.I965I 0.26 TCGA-EB-A299-01 20 947950 947950 C T RSPO4 Silent p.G92G 0.14 TCGA-EB-A299-01 22 26423026 26423026 G A MYO18B Silent p.G2362G 0.26 TCGA-EB-A299-01 22 30662782 30662782 C T OSM Missense_Mutation p.V3I 0.37 deleterious_low_confidence(0.03) benign(0.097) TCGA-EB-A299-01 22 46628007 46628007 C T PPARA Silent p.L344L 0.29 TCGA-EB-A299-01 22 50217902 50217902 C A BRD1 Missense_Mutation p.V22F 0.38 tolerated(0.06) benign(0.044) TCGA-EB-A299-01 22 50439249 50439249 G A IL17REL Silent p.T51T 0.76 TCGA-EB-A299-01 2 101185457 101185457 G A PDCL3 Silent p.E66E 0.09 TCGA-EB-A299-01 2 110919263 110919263 G A NPHP1 Nonsense_Mutation p.R347* 0.27 TCGA-EB-A299-01 2 120438625 120438625 C T TMEM177 Nonsense_Mutation p.Q66* 0.35 TCGA-EB-A299-01 2 152466398 152466398 G A NEB Silent p.Y4085Y 0.08 TCGA-EB-A299-01 2 168103609 168103609 G A XIRP2 Missense_Mutation p.E1903K 0.34 probably_damaging(0.999) TCGA-EB-A299-01 2 168726189 168726189 C T B3GALT1 Missense_Mutation p.R214W 0.25 deleterious(0.03) probably_damaging(0.973) TCGA-EB-A299-01 2 170034386 170034386 A G LRP2 Silent p.N3440N 0.09 TCGA-EB-A299-01 2 175245530 175245530 A G CIR1 Splice_Site p.X84_splice 0.27 TCGA-EB-A299-01 2 196642563 196642563 G A DNAH7 Silent p.F3675F 0.30 TCGA-EB-A299-01 2 198640397 198640397 C T BOLL Missense_Mutation p.G127E 0.08 tolerated(0.26) possibly_damaging(0.559) TCGA-EB-A299-01 2 21236264 21236264 G A APOB Silent p.F1328F 0.33 TCGA-EB-A299-01 2 212495195 212495195 C T ERBB4 Missense_Mutation p.E691K 0.34 deleterious(0) possibly_damaging(0.566) TCGA-EB-A299-01 2 228883076 228883076 C T SPHKAP Missense_Mutation p.E832K 0.13 tolerated(0.73) benign(0.05) TCGA-EB-A299-01 2 233635934 233635934 T G KCNJ13 Missense_Mutation p.I47L 0.26 tolerated(0.2) benign(0.002) TCGA-EB-A299-01 2 31600037 31600037 C T XDH Missense_Mutation p.G437S 0.11 deleterious(0.02) probably_damaging(0.973) TCGA-EB-A299-01 2 55481309 55481309 G A MTIF2 Missense_Mutation p.P178S 0.17 tolerated(0.18) benign(0.122) TCGA-EB-A299-01 2 63282748 63282748 C T OTX1 Missense_Mutation p.S121F 0.15 deleterious(0) probably_damaging(0.96) TCGA-EB-A299-01 3 119120970 119120970 G A ARHGAP31 Silent p.S457S 0.46 TCGA-EB-A299-01 3 129389571 129389571 C T TMCC1 Silent p.E371E 0.17 TCGA-EB-A299-01 3 1424823 1424823 C T CNTN6 Silent p.S788S 0.29 TCGA-EB-A299-01 3 164786967 164786967 C T SI Missense_Mutation p.R91K 0.17 deleterious(0.04) benign(0.367) TCGA-EB-A299-01 3 168825738 168825738 G A MECOM Silent p.F737F 0.15 TCGA-EB-A299-01 3 184059730 184059730 C T FAM131A Intron 0.28 TCGA-EB-A299-01 3 196786775 196786775 G A DLG1 Missense_Mutation p.S856F 0.25 deleterious(0.01) benign(0.058) TCGA-EB-A299-01 3 23996194 23996194 C T NR1D2 Silent p.A61A 0.24 TCGA-EB-A299-01 3 27760930 27760930 G A EOMES Missense_Mutation p.S360F 0.32 deleterious(0) probably_damaging(0.949) TCGA-EB-A299-01 3 2967415 2967415 C T CNTN4 Missense_Mutation p.P437L 0.27 deleterious(0.01) possibly_damaging(0.837) TCGA-EB-A299-01 3 48956243 48956243 C T ARIH2OS Missense_Mutation p.D114N 0.36 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-EB-A299-01 3 53326674 53326675 - A DCP1A Frame_Shift_Ins p.Q270Sfs*18 0.33 TCGA-EB-A299-01 4 126412767 126412767 G A FAT4 Nonsense_Mutation p.W4930* 0.26 TCGA-EB-A299-01 4 138452867 138452867 C T PCDH18 Missense_Mutation p.E126K 0.27 deleterious(0) benign(0.289) TCGA-EB-A299-01 4 146824143 146824143 C T ZNF827 Missense_Mutation p.V90I 0.37 tolerated_low_confidence(0.3) benign(0.002) TCGA-EB-A299-01 4 146824144 146824144 C T ZNF827 Silent p.E89E 0.36 TCGA-EB-A299-01 4 175710078 175710078 C T GLRA3 Missense_Mutation p.E30K 0.32 deleterious(0.01) benign(0.008) TCGA-EB-A299-01 4 189012722 189012722 G A TRIML2 Silent p.F323F 0.33 TCGA-EB-A299-01 4 2943972 2943972 G A NOP14 Silent p.L666L 0.38 TCGA-EB-A299-01 4 44177124 44177124 G A KCTD8 Missense_Mutation p.P369S 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-EB-A299-01 4 47938833 47938833 G A CNGA1 Nonsense_Mutation p.R629* 0.23 TCGA-EB-A299-01 5 121776381 121776381 G A SNCAIP Missense_Mutation p.E452K 0.33 tolerated(0.06) possibly_damaging(0.796) TCGA-EB-A299-01 5 135272332 135272332 G A FBXL21 5'Flank 0.41 TCGA-EB-A299-01 5 13762983 13762983 C G DNAH5 Missense_Mutation p.E3377Q 0.08 possibly_damaging(0.728) TCGA-EB-A299-01 5 13776655 13776655 G A DNAH5 Missense_Mutation p.S3089L 0.35 possibly_damaging(0.651) TCGA-EB-A299-01 5 140256848 140256848 G A PCDHA12 Silent p.V597V 0.31 TCGA-EB-A299-01 5 140740075 140740075 G A PCDHGB2 Missense_Mutation p.D125N 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A299-01 5 172744761 172744761 C T STC2 3'UTR 0.50 TCGA-EB-A299-01 5 180582353 180582353 G A OR2V2 Missense_Mutation p.M137I 0.22 deleterious(0.02) benign(0.011) TCGA-EB-A299-01 5 1879826 1879826 G A IRX4 Silent p.I176I 0.26 TCGA-EB-A299-01 5 33938001 33938001 C T RXFP3 Missense_Mutation p.P386S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A299-01 5 41161815 41161815 G A C6 Missense_Mutation p.P480S 0.13 deleterious(0) probably_damaging(0.996) TCGA-EB-A299-01 5 434549 434549 C T AHRR Missense_Mutation p.T587I 0.48 deleterious(0.01) possibly_damaging(0.786) TCGA-EB-A299-01 6 125231602 125231602 C T RP11-510H23.1 RNA 0.44 TCGA-EB-A299-01 6 153076403 153076403 G A VIP Splice_Site p.X77_splice 0.47 TCGA-EB-A299-01 6 167591993 167591993 C T TCP10L2 Missense_Mutation p.P207L 0.19 deleterious(0) possibly_damaging(0.647) TCGA-EB-A299-01 6 26508961 26508961 G A BTN1A1 Missense_Mutation p.M380I 0.08 tolerated(0.11) benign(0.011) TCGA-EB-A299-01 6 30880133 30880133 C T GTF2H4 Silent p.A329A 0.29 TCGA-EB-A299-01 6 32152007 32152007 C T AGER 5'UTR 0.28 TCGA-EB-A299-01 6 35467845 35467845 C T TULP1 Missense_Mutation p.D470N 0.37 deleterious(0.02) benign(0.018) TCGA-EB-A299-01 6 51890761 51890761 A G PKHD1 Missense_Mutation p.S1283P 0.39 tolerated(0.2) benign(0.026) TCGA-EB-A299-01 6 52344502 52344502 C T EFHC1 Silent p.N519N 0.33 TCGA-EB-A299-01 6 83892634 83892634 C T PGM3 Missense_Mutation p.R202Q 0.32 tolerated(0.71) benign(0.004) TCGA-EB-A299-01 7 100218570 100218570 G A TFR2 Silent p.F772F 0.55 TCGA-EB-A299-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.62 deleterious(0) probably_damaging(0.967) TCGA-EB-A299-01 7 142364690 142364690 T C TRBV24-1 Missense_Mutation p.F109L 0.70 tolerated(0.68) benign(0.051) TCGA-EB-A299-01 7 142459664 142459664 C T PRSS1 Silent p.V80V 0.42 TCGA-EB-A299-01 7 37780304 37780304 C T GPR141 Silent p.F103F 0.23 TCGA-EB-A299-01 7 44798879 44798879 G A ZMIZ2 Splice_Site p.X272_splice 0.26 TCGA-EB-A299-01 7 83634740 83634740 C T SEMA3A Silent p.T425T 0.30 TCGA-EB-A299-01 8 110420352 110420352 G T PKHD1L1 Nonsense_Mutation p.G630* 0.30 TCGA-EB-A299-01 8 113332163 113332163 C T CSMD3 Missense_Mutation p.E2405K 0.31 deleterious(0.03) possibly_damaging(0.677) TCGA-EB-A299-01 8 116426948 116426948 C T TRPS1 Missense_Mutation p.G1063E 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A299-01 8 13959999 13959999 T G SGCZ Silent p.S210S 0.26 TCGA-EB-A299-01 8 144406278 144406278 C T TOP1MT Missense_Mutation p.R284Q 0.09 deleterious(0.02) possibly_damaging(0.854) TCGA-EB-A299-01 8 144885625 144885625 G A SCRIB Silent p.L1177L 0.36 TCGA-EB-A299-01 8 27634168 27634168 G A ESCO2 Missense_Mutation p.E115K 0.33 tolerated(1) benign(0.006) TCGA-EB-A299-01 8 38370031 38370031 G A C8orf86 Silent p.S182S 0.29 TCGA-EB-A299-01 8 41571691 41571691 G A ANK1 Missense_Mutation p.P628S 0.38 deleterious(0) probably_damaging(0.998) TCGA-EB-A299-01 8 59409663 59409663 A C CYP7A1 Missense_Mutation p.H136Q 0.33 tolerated(0.12) benign(0.001) TCGA-EB-A299-01 8 59492257 59492257 A G SDCBP Missense_Mutation p.I218M 0.32 deleterious(0) probably_damaging(0.984) TCGA-EB-A299-01 8 77618595 77618595 C T ZFHX4 Missense_Mutation p.P758S 0.32 possibly_damaging(0.803) TCGA-EB-A299-01 8 87645038 87645038 A T CNGB3 Missense_Mutation p.V421D 0.41 deleterious(0) possibly_damaging(0.873) TCGA-EB-A299-01 9 116356360 116356360 C T RGS3 Intron 0.51 TCGA-EB-A299-01 9 116811400 116811400 C T ZNF618 Silent p.F513F 0.59 TCGA-EB-A299-01 9 134350745 134350745 C T PRRC2B Missense_Mutation p.R1077C 0.52 deleterious(0) probably_damaging(0.932) TCGA-EB-A299-01 X 118284450 118284450 C T KIAA1210 Silent p.R31R 0.23 TCGA-EB-A299-01 X 1401656 1401656 G A CSF2RA Silent p.L20L 0.34 TCGA-EB-A299-01 X 30269600 30269600 G A MAGEB1 Silent p.T330T 0.74 TCGA-EB-A299-01 X 5811443 5811443 G A NLGN4X Silent p.P622P 0.73 TCGA-EB-A299-01 Y 16952557 16952557 C T NLGN4Y Silent p.P622P 0.14 TCGA-EB-A3HV-01 10 91470736 91470736 G T KIF20B Missense_Mutation p.G170V 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A3HV-01 11 2338593 2338593 C A TSPAN32 Missense_Mutation p.Q247K 0.38 deleterious(0.01) benign(0.164) TCGA-EB-A3HV-01 11 60666698 60666698 G A PRPF19 Missense_Mutation p.R303W 0.33 deleterious(0) possibly_damaging(0.892) TCGA-EB-A3HV-01 11 61133677 61133677 G T TMEM138 Missense_Mutation p.V97F 0.04 deleterious(0.02) benign(0.054) TCGA-EB-A3HV-01 11 62294057 62294057 G A AHNAK Missense_Mutation p.P2611L 0.36 probably_damaging(1) TCGA-EB-A3HV-01 11 89069013 89069013 C T NOX4 Missense_Mutation p.G539E 0.34 tolerated(0.42) benign(0.021) TCGA-EB-A3HV-01 12 114803975 114803975 C T TBX5 Missense_Mutation p.R326K 0.58 deleterious(0.01) possibly_damaging(0.82) TCGA-EB-A3HV-01 12 52565323 52565323 G T KRT80 Intron 0.13 TCGA-EB-A3HV-01 12 53202507 53202507 C T KRT4 Missense_Mutation p.R321K 0.30 tolerated(0.56) benign(0.004) TCGA-EB-A3HV-01 12 57995025 57995025 C A PIP4K2C Intron 0.31 TCGA-EB-A3HV-01 12 7651756 7651756 C T CD163 Silent p.T162T 0.32 TCGA-EB-A3HV-01 14 21899283 21899283 G A CHD8 Missense_Mutation p.H174Y 0.47 tolerated_low_confidence(0.14) benign(0.015) TCGA-EB-A3HV-01 14 95081348 95081348 G A SERPINA3 Silent p.G190G 0.31 TCGA-EB-A3HV-01 15 78473267 78473267 C T ACSBG1 Silent p.V361V 0.43 TCGA-EB-A3HV-01 15 93007682 93007682 C T ST8SIA2 3'UTR 0.35 TCGA-EB-A3HV-01 16 67233292 67233292 C T ELMO3 Silent p.L74L 0.32 TCGA-EB-A3HV-01 17 46868902 46868902 C T TTLL6 Silent p.R354R 0.27 TCGA-EB-A3HV-01 17 6364768 6364768 C T PITPNM3 Missense_Mutation p.M805I 0.30 tolerated(0.69) benign(0.062) TCGA-EB-A3HV-01 18 21487847 21487847 G A LAMA3 Silent p.G2321G 0.27 TCGA-EB-A3HV-01 18 3272945 3272945 C T MYL12B Missense_Mutation p.R17C 0.28 tolerated(0.15) benign(0.007) TCGA-EB-A3HV-01 18 33795595 33795595 C T MOCOS Silent p.F484F 0.07 TCGA-EB-A3HV-01 19 16870083 16870083 A C NWD1 Missense_Mutation p.D606A 0.29 deleterious(0) probably_damaging(0.967) TCGA-EB-A3HV-01 19 19334907 19334907 A G NCAN Missense_Mutation p.S185G 0.36 tolerated(0.06) benign(0.389) TCGA-EB-A3HV-01 19 4171822 4171822 G A CREB3L3 Silent p.S414S 0.31 TCGA-EB-A3HV-01 19 48603074 48603074 G A PLA2G4C Missense_Mutation p.L111F 0.37 deleterious(0.05) possibly_damaging(0.875) TCGA-EB-A3HV-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.31 deleterious(0) probably_damaging(0.993) TCGA-EB-A3HV-01 19 758679 758679 C T MISP Missense_Mutation p.P578L 0.44 tolerated(0.16) benign(0.019) TCGA-EB-A3HV-01 19 7830519 7830519 C T CLEC4M Intron 0.27 TCGA-EB-A3HV-01 1 223395520 223395520 G A SUSD4 3'UTR 0.35 TCGA-EB-A3HV-01 1 248570073 248570073 C T OR2T1 Missense_Mutation p.P260S 0.33 deleterious(0) probably_damaging(0.997) TCGA-EB-A3HV-01 1 27106185 27106185 C T ARID1A Silent p.A1932A 0.68 TCGA-EB-A3HV-01 1 84408199 84408199 C A TTLL7 Missense_Mutation p.G224W 0.09 deleterious(0) probably_damaging(0.999) TCGA-EB-A3HV-01 20 13782265 13782265 C T NDUFAF5 Missense_Mutation p.P218L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3HV-01 20 40790007 40790007 G A PTPRT Silent p.F889F 0.32 TCGA-EB-A3HV-01 20 45630102 45630102 C T EYA2 Missense_Mutation p.L49F 0.34 tolerated(0.05) benign(0.011) TCGA-EB-A3HV-01 21 43531067 43531067 G A UMODL1 Missense_Mutation p.A579T 0.12 tolerated(1) benign(0.054) TCGA-EB-A3HV-01 22 25294110 25294110 C A SGSM1 Missense_Mutation p.L787M 0.38 tolerated(0.07) possibly_damaging(0.62) TCGA-EB-A3HV-01 22 25623935 25623935 C A CRYBB2 Missense_Mutation p.L97M 0.28 tolerated(0.13) benign(0.376) TCGA-EB-A3HV-01 2 17698954 17698954 C T RAD51AP2 Silent p.L243L 0.31 TCGA-EB-A3HV-01 2 179510746 179510746 C T TTN Missense_Mutation p.E13437K 0.43 TCGA-EB-A3HV-01 2 188243710 188243710 T A CALCRL Missense_Mutation p.I153F 0.03 deleterious(0) benign(0.34) TCGA-EB-A3HV-01 2 36956612 36956612 G A VIT Silent p.K32K 0.36 TCGA-EB-A3HV-01 2 97475305 97475305 C T CNNM4 3'UTR 0.40 TCGA-EB-A3HV-01 3 186272124 186272124 G A TBCCD1 Missense_Mutation p.S488F 0.34 tolerated(0.14) benign(0.054) TCGA-EB-A3HV-01 3 195609137 195609137 G A TNK2 Silent p.F287F 0.27 TCGA-EB-A3HV-01 3 40529490 40529490 C T ZNF619 Missense_Mutation p.P537S 0.28 tolerated_low_confidence(0.16) benign(0) TCGA-EB-A3HV-01 4 103822465 103822465 C A SLC9B1 Nonsense_Mutation p.E453* 0.08 TCGA-EB-A3HV-01 4 114824057 114824057 C T ARSJ Silent p.Q391Q 0.54 TCGA-EB-A3HV-01 5 1052374 1052374 G A SLC12A7 3'UTR 0.65 TCGA-EB-A3HV-01 5 67592108 67592108 C T PIK3R1 Nonsense_Mutation p.R642* 0.04 TCGA-EB-A3HV-01 6 133802688 133802688 G A EYA4 Missense_Mutation p.G353E 0.32 deleterious(0) possibly_damaging(0.691) TCGA-EB-A3HV-01 6 42689977 42689977 G A PRPH2 Silent p.I32I 0.38 TCGA-EB-A3HV-01 6 56482840 56482840 T C DST Intron 0.33 TCGA-EB-A3HV-01 6 62604623 62604623 G A KHDRBS2 Missense_Mutation p.P243S 0.41 tolerated(0.42) benign(0.01) TCGA-EB-A3HV-01 6 69944934 69944934 C T BAI3 Missense_Mutation p.S873F 0.32 tolerated(0.62) benign(0.023) TCGA-EB-A3HV-01 6 83878963 83878963 G A PGM3 Missense_Mutation p.P568L 0.28 deleterious_low_confidence(0.02) benign(0.049) TCGA-EB-A3HV-01 6 83878964 83878964 G C PGM3 Missense_Mutation p.P568A 0.28 deleterious_low_confidence(0.01) benign(0.2) TCGA-EB-A3HV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-EB-A3HV-01 7 1535823 1535823 G T INTS1 Silent p.A560A 0.35 TCGA-EB-A3HV-01 7 73477984 73477984 G C ELN Missense_Mutation p.G651A 0.28 unknown(0) TCGA-EB-A3HV-01 7 78131051 78131051 G T MAGI2 Missense_Mutation p.Q270K 0.24 tolerated(0.37) benign(0.019) TCGA-EB-A3HV-01 8 133044208 133044208 G A OC90 Silent p.S317S 0.37 TCGA-EB-A3HV-01 X 66937441 66937441 C T AR Silent p.F765F 0.86 TCGA-EB-A3XB-01 10 102054402 102054402 A G PKD2L1 Missense_Mutation p.F517L 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A3XB-01 10 112352867 112352867 C T SMC3 Missense_Mutation p.P617S 0.23 tolerated(0.33) benign(0.009) TCGA-EB-A3XB-01 10 11894099 11894099 C T PROSER2 Missense_Mutation p.S8L 0.27 deleterious(0.04) benign(0.041) TCGA-EB-A3XB-01 10 21120489 21120489 C T NEBL Silent p.E491E 0.08 TCGA-EB-A3XB-01 10 27332407 27332407 A G ANKRD26 Silent p.S703S 0.41 TCGA-EB-A3XB-01 10 27687523 27687523 C T PTCHD3 Nonsense_Mutation p.W668* 0.45 TCGA-EB-A3XB-01 10 37490229 37490229 G A ANKRD30A Missense_Mutation p.D893N 0.48 tolerated(0.3) benign(0.094) TCGA-EB-A3XB-01 10 48371251 48371251 G A ZNF488 Nonsense_Mutation p.W240* 0.36 TCGA-EB-A3XB-01 10 52390189 52390189 G A RP11-50E11.3 RNA 0.28 TCGA-EB-A3XB-01 10 70048327 70048327 C T PBLD Missense_Mutation p.G202R 0.24 deleterious(0.01) possibly_damaging(0.816) TCGA-EB-A3XB-01 10 73046564 73046564 C T UNC5B Missense_Mutation p.T224I 0.40 deleterious(0.02) probably_damaging(1) TCGA-EB-A3XB-01 10 73574739 73574739 G A CDH23 Missense_Mutation p.G1017R 0.37 tolerated_low_confidence(0.14) benign(0.004) TCGA-EB-A3XB-01 10 75568151 75568151 G A NDST2 5'UTR 0.42 TCGA-EB-A3XB-01 10 7768994 7768994 C T ITIH2 Nonsense_Mutation p.R356* 0.38 TCGA-EB-A3XB-01 10 88769090 88769090 C T RP11-96C23.10 3'Flank 0.39 TCGA-EB-A3XB-01 10 92660474 92660474 C T RPP30 Intron 0.29 TCGA-EB-A3XB-01 10 96116935 96116935 C T NOC3L Silent p.K168K 0.37 TCGA-EB-A3XB-01 11 102567566 102567566 C T MMP27 Missense_Mutation p.G207E 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-EB-A3XB-01 11 104868115 104868115 G A CASP5 Missense_Mutation p.R414W 0.20 deleterious(0.02) possibly_damaging(0.624) TCGA-EB-A3XB-01 11 104905261 104905261 A C CASP1 Intron 0.19 TCGA-EB-A3XB-01 11 113270413 113270413 G A ANKK1 Silent p.L574L 0.38 TCGA-EB-A3XB-01 11 117152097 117152097 C T RNF214 Missense_Mutation p.R405W 0.24 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XB-01 11 119043650 119043650 C T NLRX1 Missense_Mutation p.P61S 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-EB-A3XB-01 11 119244171 119244171 G A USP2 Missense_Mutation p.T7I 0.17 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-EB-A3XB-01 11 121500244 121500244 C T SORL1 Missense_Mutation p.S2206L 0.23 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XB-01 11 123524604 123524604 G A SCN3B 5'UTR 0.24 TCGA-EB-A3XB-01 11 123814281 123814281 C T OR6T1 Missense_Mutation p.D89N 0.13 tolerated(0.65) benign(0.001) TCGA-EB-A3XB-01 11 125867302 125867302 G A CDON Missense_Mutation p.P721L 0.20 deleterious(0) probably_damaging(0.984) TCGA-EB-A3XB-01 11 1272390 1272390 C T MUC5B Silent p.T4760T 0.17 TCGA-EB-A3XB-01 11 129739650 129739650 G A NFRKB Silent p.I1115I 0.20 TCGA-EB-A3XB-01 11 134217268 134217268 T C GLB1L2 Missense_Mutation p.F167L 0.17 deleterious(0) probably_damaging(0.98) TCGA-EB-A3XB-01 11 18288502 18288502 C T SAA1 Missense_Mutation p.S23L 0.21 deleterious(0.04) benign(0.225) TCGA-EB-A3XB-01 11 32663547 32663547 C T CCDC73 Missense_Mutation p.E341K 0.28 deleterious(0.02) possibly_damaging(0.903) TCGA-EB-A3XB-01 11 397067 397067 G A PKP3 Missense_Mutation p.G189E 0.13 tolerated(0.31) benign(0.19) TCGA-EB-A3XB-01 11 4511034 4511034 C T OR52K1 Missense_Mutation p.R302C 0.19 deleterious(0.01) benign(0.032) TCGA-EB-A3XB-01 11 46391094 46391094 C T DGKZ Silent p.V353V 0.16 TCGA-EB-A3XB-01 11 4673985 4673985 T A OR51E1 Missense_Mutation p.S77T 0.21 deleterious(0.02) possibly_damaging(0.883) TCGA-EB-A3XB-01 11 48510994 48510994 G A OR4A47 Missense_Mutation p.G217D 0.22 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-EB-A3XB-01 11 49168403 49168403 C T FOLH1 Missense_Mutation p.D720N 0.22 tolerated(0.09) benign(0.033) TCGA-EB-A3XB-01 11 49221845 49221845 G A FOLH1 Missense_Mutation p.P125S 0.31 tolerated(0.16) benign(0.032) TCGA-EB-A3XB-01 11 49597756 49597756 C T RP11-707M1.1 RNA 0.19 TCGA-EB-A3XB-01 11 55926911 55926911 C T OR8K5 Missense_Mutation p.E295K 0.29 tolerated_low_confidence(1) benign(0) TCGA-EB-A3XB-01 11 56409763 56409763 C T OR5AP2 Missense_Mutation p.M51I 0.14 tolerated(0.08) benign(0.007) TCGA-EB-A3XB-01 11 56431315 56431315 G A OR5AR1 Missense_Mutation p.D52N 0.18 tolerated(0.08) possibly_damaging(0.755) TCGA-EB-A3XB-01 11 58170040 58170040 G A OR5B3 Silent p.P281P 0.15 TCGA-EB-A3XB-01 11 58170043 58170043 G A OR5B3 Silent p.I280I 0.13 TCGA-EB-A3XB-01 11 5841918 5841918 T C OR52N2 Missense_Mutation p.M118T 0.16 tolerated(0.07) benign(0.008) TCGA-EB-A3XB-01 11 6007662 6007662 G A OR52L1 Silent p.L167L 0.17 TCGA-EB-A3XB-01 11 60197120 60197120 C T MS4A5 5'UTR 0.23 TCGA-EB-A3XB-01 11 61121274 61121274 G A CYB561A3 Silent p.V142V 0.22 TCGA-EB-A3XB-01 11 61897297 61897297 C A INCENP Missense_Mutation p.R100S 0.33 deleterious(0.04) unknown(0) TCGA-EB-A3XB-01 11 62361448 62361448 G A MTA2 Silent p.L636L 0.06 TCGA-EB-A3XB-01 11 62746982 62746982 C T SLC22A6 Missense_Mutation p.E447K 0.16 deleterious(0) possibly_damaging(0.7) TCGA-EB-A3XB-01 11 6291937 6291937 G A CCKBR Missense_Mutation p.G239R 0.21 deleterious(0) probably_damaging(0.992) TCGA-EB-A3XB-01 11 6462112 6462112 G A HPX Missense_Mutation p.P28S 0.21 tolerated(1) benign(0.001) TCGA-EB-A3XB-01 11 64880878 64880878 G A TM7SF2 Missense_Mutation p.G164E 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 11 67075647 67075647 C T SSH3 Silent p.I296I 0.15 TCGA-EB-A3XB-01 11 70332853 70332853 G A SHANK2 Missense_Mutation p.P1183L 0.28 tolerated(0.06) benign(0) TCGA-EB-A3XB-01 11 70332854 70332854 G A SHANK2 Missense_Mutation p.P1183S 0.29 tolerated(0.16) benign(0) TCGA-EB-A3XB-01 11 7847091 7847091 G A OR5P3 Silent p.I143I 0.22 TCGA-EB-A3XB-01 11 82644584 82644584 C T C11orf82 Missense_Mutation p.S735F 0.26 tolerated(0.27) probably_damaging(0.935) TCGA-EB-A3XB-01 11 82996914 82996914 A G CCDC90B Splice_Site p.X34_splice 0.27 TCGA-EB-A3XB-01 12 110771024 110771024 A G ATP2A2 Missense_Mutation p.D408G 0.30 deleterious(0.04) benign(0.285) TCGA-EB-A3XB-01 12 11091687 11091687 C T TAS2R14 Silent p.K40K 0.30 TCGA-EB-A3XB-01 12 11546416 11546416 C T PRB2 Missense_Mutation p.G199E 0.12 tolerated(0.78) unknown(0) TCGA-EB-A3XB-01 12 11546576 11546576 C T PRB2 Missense_Mutation p.G146R 0.12 deleterious(0.05) unknown(0) TCGA-EB-A3XB-01 12 121004775 121004775 C T RNF10 Missense_Mutation p.S678F 0.24 tolerated(0.09) benign(0.013) TCGA-EB-A3XB-01 12 122217601 122217601 G A TMEM120B 3'UTR 0.27 TCGA-EB-A3XB-01 12 125302130 125302130 G A SCARB1 Missense_Mutation p.P84S 0.27 deleterious(0) probably_damaging(0.924) TCGA-EB-A3XB-01 12 129569323 129569323 G A TMEM132D Intron 0.47 TCGA-EB-A3XB-01 12 130929789 130929789 C T RIMBP2 Missense_Mutation p.E186K 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 12 13233638 13233638 C T KIAA1467 3'UTR 0.38 TCGA-EB-A3XB-01 12 133196278 133196278 T A P2RX2 Missense_Mutation p.F108Y 0.23 deleterious(0) benign(0.311) TCGA-EB-A3XB-01 12 18691153 18691153 C T PIK3C2G Silent p.N1088N 0.26 TCGA-EB-A3XB-01 12 18854502 18854502 C T PLCZ1 Missense_Mutation p.G317E 0.29 tolerated(0.49) benign(0.053) TCGA-EB-A3XB-01 12 18891960 18891960 G A CAPZA3 Missense_Mutation p.R253K 0.26 tolerated(1) benign(0.009) TCGA-EB-A3XB-01 12 27127142 27127142 A G TM7SF3 Missense_Mutation p.V490A 0.32 deleterious(0.03) benign(0.052) TCGA-EB-A3XB-01 12 27890496 27890496 C G MRPS35 Nonsense_Mutation p.Y219* 0.29 TCGA-EB-A3XB-01 12 41337930 41337930 C T CNTN1 Silent p.I547I 0.19 TCGA-EB-A3XB-01 12 41966991 41966991 G A PDZRN4 Missense_Mutation p.A804T 0.21 tolerated(0.6) benign(0) TCGA-EB-A3XB-01 12 43860573 43860573 G A ADAMTS20 Missense_Mutation p.P417S 0.27 tolerated(0.4) possibly_damaging(0.614) TCGA-EB-A3XB-01 12 47181798 47181798 G A SLC38A4 Missense_Mutation p.S76F 0.32 deleterious(0) possibly_damaging(0.89) TCGA-EB-A3XB-01 12 4737262 4737262 C T AKAP3 Missense_Mutation p.R269Q 0.31 tolerated(0.35) benign(0.046) TCGA-EB-A3XB-01 12 48482738 48482738 G A SENP1 Missense_Mutation p.P76S 0.40 deleterious_low_confidence(0) benign(0.251) TCGA-EB-A3XB-01 12 49424413 49424413 G A KMT2D Missense_Mutation p.P4604S 0.12 unknown(0) TCGA-EB-A3XB-01 12 5154324 5154324 C A KCNA5 Missense_Mutation p.F337L 0.14 tolerated(0.13) probably_damaging(0.995) TCGA-EB-A3XB-01 12 52910459 52910459 G A KRT5 Silent p.I467I 0.31 TCGA-EB-A3XB-01 12 53242587 53242587 G A KRT78 Missense_Mutation p.S43F 0.30 deleterious(0.03) possibly_damaging(0.485) TCGA-EB-A3XB-01 12 53457582 53457582 C T TENC1 Silent p.H1392H 0.29 TCGA-EB-A3XB-01 12 55361005 55361005 C T TESPA1 Missense_Mutation p.G91E 0.18 tolerated(0.09) benign(0.273) TCGA-EB-A3XB-01 12 55725800 55725800 G A OR6C3 Missense_Mutation p.V106M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.757) TCGA-EB-A3XB-01 12 56823910 56823910 G A TIMELESS Silent p.N355N 0.28 TCGA-EB-A3XB-01 12 57572190 57572190 G A LRP1 Silent p.E1470E 0.23 TCGA-EB-A3XB-01 12 57861986 57861986 G A GLI1 Silent p.L429L 0.45 TCGA-EB-A3XB-01 12 58002312 58002312 C T DTX3 Missense_Mutation p.P254S 0.15 deleterious(0) possibly_damaging(0.791) TCGA-EB-A3XB-01 12 6094739 6094739 G A VWF Silent p.P2297P 0.32 TCGA-EB-A3XB-01 12 6138607 6138607 C T VWF Silent p.V956V 0.35 TCGA-EB-A3XB-01 12 69252815 69252815 G A CPM Missense_Mutation p.P326L 0.26 deleterious(0.01) probably_damaging(0.939) TCGA-EB-A3XB-01 12 70963633 70963633 G C PTPRB Missense_Mutation p.D1152E 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 12 72338095 72338095 C T TPH2 Missense_Mutation p.H93Y 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3XB-01 12 7649537 7649537 C T CD163 Missense_Mutation p.G324E 0.23 deleterious(0) probably_damaging(0.992) TCGA-EB-A3XB-01 12 7900072 7900072 C T CLEC4C Intron 0.25 TCGA-EB-A3XB-01 12 79813052 79813052 G A SYT1 Intron 0.19 TCGA-EB-A3XB-01 12 8211105 8211105 A G C3AR1 3'UTR 0.44 TCGA-EB-A3XB-01 12 8326967 8326967 G A ZNF705A Missense_Mutation p.E20K 0.24 deleterious(0) benign(0) TCGA-EB-A3XB-01 12 8326982 8326982 G A ZNF705A Missense_Mutation p.D25N 0.23 deleterious(0.05) probably_damaging(0.945) TCGA-EB-A3XB-01 12 8374351 8374351 C T FAM90A1 3'UTR 0.16 TCGA-EB-A3XB-01 12 8673885 8673885 C T CLEC4D 3'UTR 0.23 TCGA-EB-A3XB-01 13 113798367 113798367 C T F10 Silent p.I235I 0.14 TCGA-EB-A3XB-01 13 20039425 20039425 C T TPTE2 Missense_Mutation p.G216R 0.14 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XB-01 13 25144862 25144862 G A RP11-556N21.1 RNA 0.11 TCGA-EB-A3XB-01 13 38211309 38211309 G A TRPC4 Nonsense_Mutation p.R894* 0.20 TCGA-EB-A3XB-01 13 38320340 38320340 G A TRPC4 Silent p.L211L 0.19 TCGA-EB-A3XB-01 13 52960200 52960200 G A THSD1 Silent p.S381S 0.22 TCGA-EB-A3XB-01 13 58208535 58208535 G A PCDH17 Missense_Mutation p.E619K 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-EB-A3XB-01 13 58299515 58299515 G A PCDH17 3'UTR 0.25 TCGA-EB-A3XB-01 13 70514348 70514348 C T KLHL1 Missense_Mutation p.D280N 0.20 deleterious(0.03) benign(0.394) TCGA-EB-A3XB-01 13 75898493 75898493 G A TBC1D4 Missense_Mutation p.S693F 0.17 tolerated(0.09) benign(0.382) TCGA-EB-A3XB-01 13 78192159 78192159 T A SCEL Missense_Mutation p.I531N 0.19 deleterious(0) probably_damaging(0.921) TCGA-EB-A3XB-01 13 96242593 96242593 G A DZIP1 Nonsense_Mutation p.R595* 0.23 TCGA-EB-A3XB-01 13 99378639 99378639 G A SLC15A1 Missense_Mutation p.S29F 0.21 deleterious(0) probably_damaging(0.985) TCGA-EB-A3XB-01 14 102356587 102356587 A G PPP2R5C Missense_Mutation p.T246A 0.20 deleterious(0) benign(0.211) TCGA-EB-A3XB-01 14 107012978 107012978 C T IGHV3-49 Missense_Mutation p.S106N 0.28 tolerated_low_confidence(0.19) benign(0.01) TCGA-EB-A3XB-01 14 107013088 107013088 G A IGHV3-49 Silent p.F69F 0.30 TCGA-EB-A3XB-01 14 20216091 20216091 T G OR4Q3 Missense_Mutation p.F169V 0.07 deleterious(0) possibly_damaging(0.574) TCGA-EB-A3XB-01 14 20216495 20216495 G A OR4Q3 Silent p.R303R 0.06 TCGA-EB-A3XB-01 14 24525909 24525909 C T LRRC16B Missense_Mutation p.S315F 0.40 deleterious(0) possibly_damaging(0.897) TCGA-EB-A3XB-01 14 33014668 33014668 G A AKAP6 Missense_Mutation p.R270Q 0.15 tolerated(0.19) benign(0.046) TCGA-EB-A3XB-01 14 47120418 47120418 C T RPL10L Silent p.T174T 0.27 TCGA-EB-A3XB-01 14 51094855 51094855 G A ATL1 Missense_Mutation p.G409D 0.16 deleterious(0) probably_damaging(0.912) TCGA-EB-A3XB-01 14 61187119 61187119 C A SIX4 Missense_Mutation p.G303V 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 14 63269135 63269135 G A KCNH5 Silent p.Y578Y 0.09 TCGA-EB-A3XB-01 14 65253191 65253191 G A SPTB Silent p.L1164L 0.19 TCGA-EB-A3XB-01 14 68241765 68241765 G A ZFYVE26 Missense_Mutation p.P1763L 0.14 tolerated(0.09) benign(0.001) TCGA-EB-A3XB-01 14 81610564 81610564 T C TSHR Missense_Mutation p.V721A 0.29 tolerated(0.87) benign(0.026) TCGA-EB-A3XB-01 14 88442785 88442785 G A GALC Silent p.I223I 0.32 TCGA-EB-A3XB-01 14 88477563 88477563 C T GPR65 Silent p.F124F 0.32 TCGA-EB-A3XB-01 14 91739007 91739007 C T CCDC88C Missense_Mutation p.D2017N 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 14 94741724 94741724 G T PPP4R4 Silent p.R821R 0.11 TCGA-EB-A3XB-01 14 94756559 94756559 G A SERPINA10 Silent p.I124I 0.28 TCGA-EB-A3XB-01 14 96779469 96779469 G A ATG2B Missense_Mutation p.L1259F 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A3XB-01 15 100340421 100340421 C T DNM1P46 RNA 0.18 TCGA-EB-A3XB-01 15 101434134 101434134 C T ALDH1A3 Intron 0.23 TCGA-EB-A3XB-01 15 20496610 20496610 G A CHEK2P2 RNA 0.07 TCGA-EB-A3XB-01 15 22332767 22332767 C T RP11-69H14.6 RNA 0.12 TCGA-EB-A3XB-01 15 22473026 22473026 G A IGHV4OR15-8 Missense_Mutation p.S82F 0.09 deleterious(0) probably_damaging(0.985) TCGA-EB-A3XB-01 15 24924439 24924439 G A NPAP1 Missense_Mutation p.G1142E 0.20 tolerated_low_confidence(1) benign(0) TCGA-EB-A3XB-01 15 25227251 25227251 G A SNRPN 3'Flank 0.24 TCGA-EB-A3XB-01 15 25438295 25438295 G A SNORD115-11 3'Flank 0.19 TCGA-EB-A3XB-01 15 25463672 25463672 C T SNORD115-27 5'Flank 0.28 TCGA-EB-A3XB-01 15 34657318 34657318 G A LPCAT4 Silent p.V123V 0.36 TCGA-EB-A3XB-01 15 35044942 35044942 G A GJD2 Missense_Mutation p.P235S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 15 35530034 35530034 G A ANP32AP1 RNA 0.27 TCGA-EB-A3XB-01 15 43893104 43893104 C T STRC Missense_Mutation p.E1604K 0.23 tolerated(0.06) possibly_damaging(0.716) TCGA-EB-A3XB-01 15 45386459 45386459 G A DUOX2 Silent p.I1512I 0.22 TCGA-EB-A3XB-01 15 50497524 50497524 C T SLC27A2 Silent p.I312I 0.28 TCGA-EB-A3XB-01 15 50897070 50897070 C T TRPM7 Missense_Mutation p.G994E 0.17 deleterious(0) probably_damaging(0.973) TCGA-EB-A3XB-01 15 54307551 54307551 G A UNC13C Silent p.Q817Q 0.24 TCGA-EB-A3XB-01 15 54685258 54685258 G A UNC13C Missense_Mutation p.D1576N 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.872) TCGA-EB-A3XB-01 15 54707203 54707203 G A UNC13C Missense_Mutation p.G1624E 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A3XB-01 15 56757181 56757181 G A MNS1 5'UTR 0.23 TCGA-EB-A3XB-01 15 59911890 59911890 G A GCNT3 3'UTR 0.22 TCGA-EB-A3XB-01 15 74637424 74637424 C T CYP11A1 Missense_Mutation p.G196R 0.20 tolerated(0.2) probably_damaging(0.98) TCGA-EB-A3XB-01 15 75651420 75651420 C T MAN2C1 Silent p.L724L 0.21 TCGA-EB-A3XB-01 15 85188820 85188820 G C WDR73 Silent p.P255P 0.32 TCGA-EB-A3XB-01 15 91430422 91430422 G A FES Missense_Mutation p.D164N 0.22 deleterious(0.02) benign(0.131) TCGA-EB-A3XB-01 16 1270717 1270717 C T CACNA1H Missense_Mutation p.T2262I 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.717) TCGA-EB-A3XB-01 16 1400180 1400180 G A TSR3 Silent p.F194F 0.33 TCGA-EB-A3XB-01 16 1449500 1449500 G A UNKL Silent p.F203F 0.36 TCGA-EB-A3XB-01 16 17211775 17211775 G A XYLT1 Missense_Mutation p.P762L 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 16 20043600 20043600 G T GPR139 Missense_Mutation p.D173E 0.28 tolerated(1) benign(0.037) TCGA-EB-A3XB-01 16 2027386 2027386 G A TBL3 Silent p.L567L 0.33 TCGA-EB-A3XB-01 16 23079893 23079893 G A USP31 Missense_Mutation p.S1178F 0.29 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-EB-A3XB-01 16 2326779 2326779 C T ABCA3 Missense_Mutation p.E1671K 0.24 tolerated(0.16) benign(0.055) TCGA-EB-A3XB-01 16 24166055 24166055 C T PRKCB Silent p.I372I 0.23 TCGA-EB-A3XB-01 16 31141818 31141818 G A KAT8 Missense_Mutation p.E350K 0.12 deleterious(0) probably_damaging(0.983) TCGA-EB-A3XB-01 16 31434439 31434439 G A ITGAD Missense_Mutation p.E929K 0.14 deleterious(0.03) possibly_damaging(0.836) TCGA-EB-A3XB-01 16 396957 396957 G A AXIN1 Silent p.P23P 0.23 TCGA-EB-A3XB-01 16 48595380 48595380 G A N4BP1 Nonsense_Mutation p.Q392* 0.23 TCGA-EB-A3XB-01 16 66887495 66887495 G A CA7 3'UTR 0.28 TCGA-EB-A3XB-01 16 66942342 66942342 C T CDH16 Missense_Mutation p.D815N 0.15 tolerated(0.13) benign(0.046) TCGA-EB-A3XB-01 16 68406070 68406070 C T SMPD3 Silent p.T5T 0.19 TCGA-EB-A3XB-01 16 70359509 70359509 C T DDX19B Silent p.A175A 0.31 TCGA-EB-A3XB-01 16 705456 705456 C T WDR90 Missense_Mutation p.S569L 0.40 tolerated(0.14) benign(0.001) TCGA-EB-A3XB-01 16 77325201 77325201 T C ADAMTS18 Missense_Mutation p.N1122D 0.29 tolerated(0.63) benign(0.001) TCGA-EB-A3XB-01 16 81295874 81295874 G A BCMO1 Missense_Mutation p.E153K 0.21 deleterious(0.01) possibly_damaging(0.864) TCGA-EB-A3XB-01 16 82032973 82032973 G A SDR42E1 Missense_Mutation p.P309S 0.30 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XB-01 16 90109494 90109494 T G GAS8 Intron 0.33 TCGA-EB-A3XB-01 17 10304766 10304766 C T MYH8 Silent p.V978V 0.25 TCGA-EB-A3XB-01 17 10426437 10426437 C T MYH2 Silent p.V1881V 0.31 TCGA-EB-A3XB-01 17 12626297 12626297 G A MYOCD Silent p.V129V 0.27 TCGA-EB-A3XB-01 17 16470714 16470714 G A ZNF287 Missense_Mutation p.S111F 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3XB-01 17 19646731 19646731 C T ALDH3A1 Missense_Mutation p.E70K 0.20 deleterious(0) possibly_damaging(0.729) TCGA-EB-A3XB-01 17 20906359 20906359 G A USP22 Silent p.F521F 0.32 TCGA-EB-A3XB-01 17 20919102 20919102 G A USP22 Silent p.L267L 0.22 TCGA-EB-A3XB-01 17 21825445 21825445 C T FAM27L RNA 0.19 TCGA-EB-A3XB-01 17 29645707 29645707 T A EVI2A Missense_Mutation p.S132C 0.27 deleterious(0.04) possibly_damaging(0.891) TCGA-EB-A3XB-01 17 2995901 2995901 G A OR1D2 Silent p.L130L 0.26 TCGA-EB-A3XB-01 17 31438984 31438984 G A ASIC2 Silent p.I270I 0.28 TCGA-EB-A3XB-01 17 32612787 32612787 C T CCL11 5'UTR 0.22 TCGA-EB-A3XB-01 17 33491062 33491062 C T UNC45B Missense_Mutation p.S343F 0.24 deleterious(0.02) possibly_damaging(0.612) TCGA-EB-A3XB-01 17 33520640 33520640 C T SLC35G3 Silent p.V229V 0.25 TCGA-EB-A3XB-01 17 34195737 34195737 C T C17orf66 Missense_Mutation p.E4K 0.20 tolerated_low_confidence(0.09) benign(0.051) TCGA-EB-A3XB-01 17 39550372 39550372 C T KRT31 Missense_Mutation p.G383R 0.26 tolerated(0.51) benign(0.014) TCGA-EB-A3XB-01 17 40315719 40315719 G A KCNH4 Silent p.S794S 0.25 TCGA-EB-A3XB-01 17 41052951 41052951 C T G6PC Nonsense_Mutation p.Q20* 0.36 TCGA-EB-A3XB-01 17 45776734 45776734 G A TBKBP1 Missense_Mutation p.R228Q 0.25 tolerated(0.28) benign(0.096) TCGA-EB-A3XB-01 17 48741355 48741355 G A ABCC3 Silent p.G407G 0.18 TCGA-EB-A3XB-01 17 56620451 56620451 A G C17orf47 Missense_Mutation p.V366A 0.19 tolerated(0.43) possibly_damaging(0.728) TCGA-EB-A3XB-01 17 57759755 57759755 T A CLTC Missense_Mutation p.F1189Y 0.31 deleterious(0) benign(0.026) TCGA-EB-A3XB-01 17 61611589 61611589 C T KCNH6 Missense_Mutation p.H340Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XB-01 17 6386917 6386917 G A PITPNM3 Silent p.F169F 0.28 TCGA-EB-A3XB-01 17 67077281 67077281 G A ABCA6 Missense_Mutation p.S1541F 0.28 tolerated(0.09) benign(0.046) TCGA-EB-A3XB-01 17 71166097 71166097 C T SSTR2 Silent p.F213F 0.24 TCGA-EB-A3XB-01 17 73569287 73569287 G A LLGL2 Missense_Mutation p.V885M 0.34 tolerated(0.09) probably_damaging(0.91) TCGA-EB-A3XB-01 17 7808948 7808948 A G CHD3 Missense_Mutation p.Q1442R 0.43 benign(0.227) TCGA-EB-A3XB-01 17 7951740 7951740 G A ALOX15B Missense_Mutation p.E630K 0.20 deleterious(0.01) probably_damaging(0.923) TCGA-EB-A3XB-01 17 79865706 79865706 G A PCYT2 Silent p.S145S 0.20 TCGA-EB-A3XB-01 18 28711491 28711491 G A DSC1 Intron 0.29 TCGA-EB-A3XB-01 18 28918401 28918401 G A DSG1 Silent p.T463T 0.20 TCGA-EB-A3XB-01 18 28956913 28956913 C T DSG4 Silent p.I13I 0.33 TCGA-EB-A3XB-01 18 28968386 28968386 G A DSG4 Silent p.G91G 0.35 TCGA-EB-A3XB-01 18 28972152 28972152 C T DSG4 Missense_Mutation p.S285L 0.29 deleterious(0) possibly_damaging(0.718) TCGA-EB-A3XB-01 18 3151782 3151782 G A MYOM1 Nonsense_Mutation p.R585* 0.24 TCGA-EB-A3XB-01 18 61064475 61064475 C T VPS4B Missense_Mutation p.R295Q 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 18 63491888 63491888 C T CDH7 Nonsense_Mutation p.Q268* 0.25 TCGA-EB-A3XB-01 19 10166414 10166414 C T C3P1 RNA 0.30 TCGA-EB-A3XB-01 19 10335455 10335455 G A S1PR2 Missense_Mutation p.L43F 0.14 tolerated(0.05) benign(0.273) TCGA-EB-A3XB-01 19 11660757 11660757 G C CNN1 3'UTR 0.14 TCGA-EB-A3XB-01 19 12541096 12541096 G A ZNF443 Silent p.S630S 0.16 TCGA-EB-A3XB-01 19 12541097 12541097 G A ZNF443 Missense_Mutation p.S630F 0.16 tolerated(0.09) benign(0.033) TCGA-EB-A3XB-01 19 12575513 12575513 C T ZNF709 Missense_Mutation p.R408Q 0.36 tolerated(0.93) probably_damaging(0.995) TCGA-EB-A3XB-01 19 15852997 15852997 G A OR10H3 Silent p.K265K 0.13 TCGA-EB-A3XB-01 19 16338446 16338446 C T AP1M1 Missense_Mutation p.S266F 0.32 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XB-01 19 17892264 17892264 C T FCHO1 Missense_Mutation p.R582C 0.27 deleterious(0) probably_damaging(0.935) TCGA-EB-A3XB-01 19 18246585 18246585 C T MAST3 Missense_Mutation p.P607S 0.28 deleterious(0.01) possibly_damaging(0.656) TCGA-EB-A3XB-01 19 18258346 18258346 C T MAST3 Silent p.S1102S 0.31 TCGA-EB-A3XB-01 19 19359662 19359662 G A NCAN Nonsense_Mutation p.W1264* 0.13 TCGA-EB-A3XB-01 19 19456163 19456163 C T MAU2 Silent p.F402F 0.25 TCGA-EB-A3XB-01 19 19779770 19779770 G A ZNF101 5'UTR 0.40 TCGA-EB-A3XB-01 19 2210768 2210768 C T DOT1L Missense_Mutation p.P422L 0.18 deleterious_low_confidence(0) benign(0.273) TCGA-EB-A3XB-01 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.18 deleterious(0.03) probably_damaging(0.964) TCGA-EB-A3XB-01 19 31025826 31025826 C T ZNF536 Missense_Mutation p.S748L 0.14 deleterious(0.02) benign(0.185) TCGA-EB-A3XB-01 19 36235043 36235043 G A U2AF1L4 Missense_Mutation p.R79W 0.21 deleterious(0.03) benign(0.093) TCGA-EB-A3XB-01 19 36235044 36235044 G T U2AF1L4 Missense_Mutation p.F78L 0.17 deleterious(0.01) possibly_damaging(0.498) TCGA-EB-A3XB-01 19 37309877 37309877 T C ZNF790 Missense_Mutation p.K457E 0.14 deleterious(0.01) possibly_damaging(0.601) TCGA-EB-A3XB-01 19 37620046 37620046 A G ZNF420 3'UTR 0.11 TCGA-EB-A3XB-01 19 3783123 3783123 C T MATK Splice_Site p.X227_splice 0.15 TCGA-EB-A3XB-01 19 38600990 38600990 G A SIPA1L3 Missense_Mutation p.V753I 0.19 deleterious(0.01) possibly_damaging(0.5) TCGA-EB-A3XB-01 19 38858758 38858758 C T CATSPERG Missense_Mutation p.H1001Y 0.05 tolerated(0.8) benign(0.291) TCGA-EB-A3XB-01 19 39002915 39002915 G A RYR1 Silent p.V3088V 0.15 TCGA-EB-A3XB-01 19 39003011 39003011 C G RYR1 Silent p.T3120T 0.32 TCGA-EB-A3XB-01 19 39788664 39788664 G A IFNL1 Missense_Mutation p.A104T 0.15 tolerated(1) benign(0.005) TCGA-EB-A3XB-01 19 40376463 40376463 G A FCGBP Silent p.C3947C 0.19 TCGA-EB-A3XB-01 19 40412184 40412184 G A FCGBP Silent p.G1148G 0.10 TCGA-EB-A3XB-01 19 4099246 4099246 G A MAP2K2 Missense_Mutation p.P291L 0.42 tolerated(0.25) benign(0.039) TCGA-EB-A3XB-01 19 4099247 4099247 G A MAP2K2 Missense_Mutation p.P291S 0.42 tolerated(0.51) benign(0.004) TCGA-EB-A3XB-01 19 41930426 41930426 C T BCKDHA Silent p.P417P 0.26 TCGA-EB-A3XB-01 19 42461187 42461187 G A RABAC1 Missense_Mutation p.A151V 0.12 deleterious(0.03) possibly_damaging(0.724) TCGA-EB-A3XB-01 19 42839288 42839288 C G MEGF8 Silent p.A220A 0.16 TCGA-EB-A3XB-01 19 43441314 43441314 C T PSG7 5'UTR 0.31 TCGA-EB-A3XB-01 19 44056249 44056249 G A XRCC1 Silent p.F334F 0.15 TCGA-EB-A3XB-01 19 46973695 46973695 G C PNMAL1 Missense_Mutation p.P200A 0.16 deleterious(0.02) possibly_damaging(0.728) TCGA-EB-A3XB-01 19 49079245 49079245 C T SULT2B1 Missense_Mutation p.P40L 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-EB-A3XB-01 19 49920509 49920509 C T CCDC155 Silent p.P511P 0.17 TCGA-EB-A3XB-01 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.31 TCGA-EB-A3XB-01 19 51535239 51535239 G A KLK12 Missense_Mutation p.P117L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 19 52115382 52115382 T C SIGLEC5 3'UTR 0.23 TCGA-EB-A3XB-01 19 53668305 53668305 G A ZNF665 Missense_Mutation p.H480Y 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3XB-01 19 55147232 55147232 G A AC009892.10 3'UTR 0.39 TCGA-EB-A3XB-01 19 55246750 55246750 G A KIR3DL3 Missense_Mutation p.G327E 0.32 deleterious(0.01) possibly_damaging(0.846) TCGA-EB-A3XB-01 19 55350936 55350936 G A KIR2DS4 Missense_Mutation p.G142R 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EB-A3XB-01 19 56319229 56319229 G A NLRP11 Missense_Mutation p.R665C 0.11 deleterious(0) possibly_damaging(0.858) TCGA-EB-A3XB-01 19 56701919 56701919 C T ZSCAN5B Silent p.K255K 0.30 TCGA-EB-A3XB-01 19 6586259 6586259 C A CD70 Silent p.T118T 0.37 TCGA-EB-A3XB-01 19 6665209 6665209 C T TNFSF14 Missense_Mutation p.G151S 0.23 tolerated(0.26) benign(0.089) TCGA-EB-A3XB-01 19 6714080 6714080 G A C3 Silent p.F232F 0.17 TCGA-EB-A3XB-01 19 8808469 8808469 C T ACTL9 Missense_Mutation p.V195M 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 19 9046973 9046973 G A MUC16 Missense_Mutation p.S11553F 0.16 possibly_damaging(0.593) TCGA-EB-A3XB-01 19 9048951 9048951 G A MUC16 Missense_Mutation p.P10894S 0.32 benign(0) TCGA-EB-A3XB-01 19 9056776 9056776 G A MUC16 Missense_Mutation p.P10224S 0.16 benign(0) TCGA-EB-A3XB-01 19 9060381 9060381 A G MUC16 Missense_Mutation p.V9022A 0.12 unknown(0) TCGA-EB-A3XB-01 19 9072508 9072508 G A MUC16 Missense_Mutation p.P4980S 0.37 unknown(0) TCGA-EB-A3XB-01 19 9073507 9073507 G A MUC16 Missense_Mutation p.P4647S 0.26 unknown(0) TCGA-EB-A3XB-01 19 9084790 9084790 G A MUC16 Missense_Mutation p.S2342L 0.45 unknown(0) TCGA-EB-A3XB-01 19 9088815 9088815 T A MUC16 Missense_Mutation p.K1000N 0.16 unknown(0) TCGA-EB-A3XB-01 1 10228260 10228260 C T UBE4B Silent p.L1089L 0.22 TCGA-EB-A3XB-01 1 103347260 103347260 C T COL11A1 Missense_Mutation p.G1678E 0.26 unknown(0) TCGA-EB-A3XB-01 1 10435402 10435402 C T KIF1B Silent p.A1747A 0.30 TCGA-EB-A3XB-01 1 10523043 10523043 A C DFFA Intron 0.28 TCGA-EB-A3XB-01 1 108697741 108697741 G A SLC25A24 Missense_Mutation p.S229L 0.31 deleterious(0.04) benign(0.378) TCGA-EB-A3XB-01 1 11009763 11009763 G A C1orf127 Missense_Mutation p.S403F 0.20 tolerated(0.08) probably_damaging(0.983) TCGA-EB-A3XB-01 1 112524980 112524980 G A KCND3 Silent p.I123I 0.30 TCGA-EB-A3XB-01 1 112524981 112524981 A G KCND3 Missense_Mutation p.I123T 0.31 deleterious(0) probably_damaging(0.927) TCGA-EB-A3XB-01 1 112524982 112524982 T C KCND3 Missense_Mutation p.I123V 0.30 deleterious(0.03) benign(0.044) TCGA-EB-A3XB-01 1 115218614 115218614 G A AMPD1 Missense_Mutation p.R500C 0.31 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XB-01 1 119427481 119427481 C T TBX15 Silent p.G455G 0.35 TCGA-EB-A3XB-01 1 119929368 119929368 G A HAO2 Missense_Mutation p.D229N 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A3XB-01 1 12460343 12460343 G C VPS13D Missense_Mutation p.A3914P 0.32 probably_damaging(0.998) TCGA-EB-A3XB-01 1 12837370 12837370 C T PRAMEF12 Silent p.I360I 0.26 TCGA-EB-A3XB-01 1 12885347 12885347 G A PRAMEF11 Missense_Mutation p.S255L 0.25 deleterious(0.01) possibly_damaging(0.49) TCGA-EB-A3XB-01 1 12907895 12907895 T C HNRNPCL1 Missense_Mutation p.N83S 0.22 deleterious(0) benign(0.022) TCGA-EB-A3XB-01 1 1372863 1372863 C T VWA1 Silent p.L210L 0.38 TCGA-EB-A3XB-01 1 1392547 1392547 G A ATAD3C Missense_Mutation p.R243Q 0.48 tolerated(0.1) benign(0.132) TCGA-EB-A3XB-01 1 1392548 1392548 G A ATAD3C Silent p.R243R 0.49 TCGA-EB-A3XB-01 1 144854558 144854558 G A PDE4DIP Silent p.N2304N 0.08 TCGA-EB-A3XB-01 1 149937770 149937770 G A OTUD7B Missense_Mutation p.T179I 0.26 tolerated(0.11) benign(0.068) TCGA-EB-A3XB-01 1 151337513 151337513 C T SELENBP1 Missense_Mutation p.R382Q 0.27 tolerated(0.06) benign(0.02) TCGA-EB-A3XB-01 1 152058026 152058026 C T TCHHL1 Missense_Mutation p.G711E 0.23 tolerated(0.12) benign(0.03) TCGA-EB-A3XB-01 1 153665827 153665827 G A NPR1 Splice_Site p.X1042_splice 0.21 TCGA-EB-A3XB-01 1 155785761 155785761 G A GON4L Intron 0.23 TCGA-EB-A3XB-01 1 155792215 155792215 G A GON4L Silent p.T250T 0.31 TCGA-EB-A3XB-01 1 155792216 155792216 G A GON4L Missense_Mutation p.T250I 0.32 deleterious(0.02) possibly_damaging(0.702) TCGA-EB-A3XB-01 1 159283655 159283655 G A OR10J3 Silent p.S265S 0.35 TCGA-EB-A3XB-01 1 159779926 159779926 C T FCRL6 Missense_Mutation p.P310L 0.39 tolerated(0.1) benign(0.037) TCGA-EB-A3XB-01 1 160109463 160109463 G A ATP1A2 Silent p.E958E 0.40 TCGA-EB-A3XB-01 1 161180608 161180608 C T NDUFS2 Intron 0.12 TCGA-EB-A3XB-01 1 169961392 169961392 A C KIFAP3 Missense_Mutation p.N396K 0.25 tolerated(0.28) benign(0.06) TCGA-EB-A3XB-01 1 170964609 170964609 C G MROH9 Missense_Mutation p.T425R 0.42 deleterious(0) benign(0.281) TCGA-EB-A3XB-01 1 171510756 171510756 T G PRRC2C Missense_Mutation p.V1382G 0.39 unknown(0) TCGA-EB-A3XB-01 1 176679259 176679259 G A PAPPA2 Missense_Mutation p.E1200K 0.37 deleterious(0) benign(0.293) TCGA-EB-A3XB-01 1 178436548 178436548 G A RASAL2 Missense_Mutation p.D1224N 0.36 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XB-01 1 182853892 182853892 C T DHX9 Silent p.I1135I 0.34 TCGA-EB-A3XB-01 1 196800945 196800945 G A CFHR1 Missense_Mutation p.R270Q 0.11 tolerated(0.08) benign(0.15) TCGA-EB-A3XB-01 1 197404430 197404430 A G CRB1 Missense_Mutation p.N1146S 0.17 tolerated(0.37) benign(0.04) TCGA-EB-A3XB-01 1 201356167 201356167 G A LAD1 Missense_Mutation p.P108S 0.25 tolerated(0.12) possibly_damaging(0.895) TCGA-EB-A3XB-01 1 201970536 201970536 C T RNPEP Missense_Mutation p.P413S 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-EB-A3XB-01 1 203024701 203024701 C T PPFIA4 Silent p.S151S 0.38 TCGA-EB-A3XB-01 1 203465214 203465214 G A OPTC Silent p.R27R 0.17 TCGA-EB-A3XB-01 1 204228404 204228404 G A PLEKHA6 Missense_Mutation p.P330L 0.22 deleterious(0.01) possibly_damaging(0.533) TCGA-EB-A3XB-01 1 204228405 204228405 G T PLEKHA6 Missense_Mutation p.P330T 0.23 deleterious(0.01) benign(0.394) TCGA-EB-A3XB-01 1 205028255 205028255 C T CNTN2 Silent p.I177I 0.26 TCGA-EB-A3XB-01 1 206317619 206317619 G A CTSE Missense_Mutation p.G15R 0.19 tolerated(0.29) probably_damaging(0.921) TCGA-EB-A3XB-01 1 207273178 207273178 C T C4BPB Silent p.N221N 0.21 TCGA-EB-A3XB-01 1 212553313 212553313 G A TMEM206 Missense_Mutation p.R249C 0.33 deleterious(0.02) possibly_damaging(0.899) TCGA-EB-A3XB-01 1 212553314 212553314 G A TMEM206 Silent p.F248F 0.33 TCGA-EB-A3XB-01 1 220089176 220089176 C T SLC30A10 Missense_Mutation p.G358E 0.27 tolerated(0.18) benign(0.022) TCGA-EB-A3XB-01 1 223176467 223176467 C T DISP1 Silent p.V576V 0.22 TCGA-EB-A3XB-01 1 228433355 228433355 G A OBSCN Silent p.G1333G 0.25 TCGA-EB-A3XB-01 1 228434484 228434484 C T OBSCN Missense_Mutation p.S1430F 0.33 probably_damaging(0.983) TCGA-EB-A3XB-01 1 228482060 228482060 G A OBSCN Missense_Mutation p.G4209E 0.33 probably_damaging(1) TCGA-EB-A3XB-01 1 228539042 228539042 T C OBSCN Missense_Mutation p.L7104P 0.33 benign(0.034) TCGA-EB-A3XB-01 1 23219523 23219523 C T EPHB2 Silent p.F525F 0.22 TCGA-EB-A3XB-01 1 23233420 23233420 G A EPHB2 Missense_Mutation p.M703I 0.30 deleterious(0) probably_damaging(0.991) TCGA-EB-A3XB-01 1 248487730 248487730 G A OR2M7 Silent p.L47L 0.25 TCGA-EB-A3XB-01 1 2939437 2939437 G A ACTRT2 3'UTR 0.08 TCGA-EB-A3XB-01 1 31837085 31837085 G A ZCCHC17 3'UTR 0.28 TCGA-EB-A3XB-01 1 34076675 34076675 G A CSMD2 Silent p.S2063S 0.33 TCGA-EB-A3XB-01 1 36557578 36557578 C T ADPRHL2 Missense_Mutation p.A195V 0.20 tolerated(0.06) possibly_damaging(0.842) TCGA-EB-A3XB-01 1 36559001 36559001 T A ADPRHL2 3'UTR 0.19 TCGA-EB-A3XB-01 1 36929887 36929887 A - MRPS15 5'UTR 0.09 TCGA-EB-A3XB-01 1 44072484 44072484 G A PTPRF Splice_Site p.X1235_splice 0.21 TCGA-EB-A3XB-01 1 55118723 55118723 G A MROH7 Missense_Mutation p.A42T 0.30 tolerated_low_confidence(0.3) benign(0.015) TCGA-EB-A3XB-01 1 70486792 70486792 G A LRRC7 Missense_Mutation p.E471K 0.23 deleterious(0) benign(0.086) TCGA-EB-A3XB-01 1 79470894 79470894 G A ELTD1 Silent p.S11S 0.18 TCGA-EB-A3XB-01 1 99380403 99380403 T A LPPR5 Missense_Mutation p.Q291L 0.30 tolerated(0.1) benign(0.062) TCGA-EB-A3XB-01 20 10025081 10025081 G A ANKEF1 Missense_Mutation p.G196R 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 20 1617037 1617037 C T SIRPG Nonsense_Mutation p.W182* 0.21 TCGA-EB-A3XB-01 20 32379123 32379123 C T ZNF341 Missense_Mutation p.P782S 0.22 tolerated_low_confidence(0.15) benign(0.003) TCGA-EB-A3XB-01 20 34451165 34451165 G A PHF20 Silent p.E217E 0.31 TCGA-EB-A3XB-01 20 35441163 35441163 G A SOGA1 Missense_Mutation p.P801S 0.41 tolerated(0.63) benign(0.001) TCGA-EB-A3XB-01 20 35695516 35695516 G A RBL1 Missense_Mutation p.R189W 0.25 deleterious(0.01) possibly_damaging(0.883) TCGA-EB-A3XB-01 20 36560112 36560112 G A VSTM2L Missense_Mutation p.G66D 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XB-01 20 3784082 3784082 C T CDC25B Missense_Mutation p.A463V 0.28 tolerated(1) benign(0.012) TCGA-EB-A3XB-01 20 3784083 3784083 C T CDC25B Silent p.A463A 0.27 TCGA-EB-A3XB-01 20 39990196 39990196 C T EMILIN3 Silent p.G671G 0.26 TCGA-EB-A3XB-01 20 42682973 42682973 G A TOX2 Missense_Mutation p.G229E 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 20 45003884 45003884 C A ELMO2 Silent p.L352L 0.24 TCGA-EB-A3XB-01 20 49227424 49227424 C T FAM65C Missense_Mutation p.R127K 0.05 deleterious(0) possibly_damaging(0.839) TCGA-EB-A3XB-01 20 51872205 51872205 C T TSHZ2 Silent p.V736V 0.29 TCGA-EB-A3XB-01 20 52570057 52570057 C T BCAS1 Missense_Mutation p.D532N 0.23 deleterious(0) possibly_damaging(0.466) TCGA-EB-A3XB-01 20 57876665 57876665 G A EDN3 Missense_Mutation p.A85T 0.31 tolerated(0.09) benign(0.389) TCGA-EB-A3XB-01 20 60881720 60881720 G A ADRM1 Silent p.Q157Q 0.25 TCGA-EB-A3XB-01 20 60885750 60885750 G A LAMA5 Missense_Mutation p.P3473S 0.27 benign(0.03) TCGA-EB-A3XB-01 20 62871838 62871838 C T MYT1 3'UTR 0.27 TCGA-EB-A3XB-01 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.08 tolerated(0.06) benign(0.063) TCGA-EB-A3XB-01 21 22782762 22782762 G A NCAM2 Missense_Mutation p.G455E 0.25 tolerated(0.32) benign(0.007) TCGA-EB-A3XB-01 21 41416186 41416186 C T DSCAM Silent p.R1734R 0.28 TCGA-EB-A3XB-01 21 41711179 41711179 C T DSCAM Missense_Mutation p.M458I 0.29 tolerated(0.11) benign(0) TCGA-EB-A3XB-01 21 42807886 42807886 C T MX1 Silent p.I76I 0.18 TCGA-EB-A3XB-01 21 45833946 45833946 C T TRPM2 Silent p.I1045I 0.24 TCGA-EB-A3XB-01 21 47969758 47969758 C T DIP2A Missense_Mutation p.S866L 0.06 deleterious(0) benign(0.277) TCGA-EB-A3XB-01 22 17601208 17601208 G C CECR6 Silent p.A270A 0.36 TCGA-EB-A3XB-01 22 20819167 20819167 G A KLHL22 Nonsense_Mutation p.R364* 0.24 TCGA-EB-A3XB-01 22 24056378 24056378 A G KB-1572G7.2 RNA 0.43 TCGA-EB-A3XB-01 22 26166101 26166101 G A MYO18B Missense_Mutation p.A513T 0.33 tolerated(0.35) possibly_damaging(0.873) TCGA-EB-A3XB-01 22 26937530 26937530 G A TPST2 Nonsense_Mutation p.Q23* 0.14 TCGA-EB-A3XB-01 22 28194115 28194115 G A MN1 Missense_Mutation p.S806L 0.27 probably_damaging(0.99) TCGA-EB-A3XB-01 22 35661022 35661022 C T HMGXB4 Missense_Mutation p.P214L 0.29 deleterious(0) benign(0.428) TCGA-EB-A3XB-01 22 36901955 36901955 A C FOXRED2 Missense_Mutation p.V172G 0.24 tolerated(0.43) benign(0.008) TCGA-EB-A3XB-01 22 37603308 37603308 C T SSTR3 Missense_Mutation p.V179M 0.20 tolerated(0.25) possibly_damaging(0.868) TCGA-EB-A3XB-01 22 38340502 38340502 C T C22orf23 Silent p.R168R 0.29 TCGA-EB-A3XB-01 22 44083434 44083434 G A EFCAB6 Silent p.I353I 0.41 TCGA-EB-A3XB-01 22 51043424 51043424 A T MAPK8IP2 Missense_Mutation p.D565V 0.16 deleterious(0.01) possibly_damaging(0.625) TCGA-EB-A3XB-01 22 51043425 51043425 C T MAPK8IP2 Silent p.D565D 0.16 TCGA-EB-A3XB-01 2 103347521 103347521 G A MFSD9 Missense_Mutation p.S87F 0.33 tolerated(0.46) benign(0.02) TCGA-EB-A3XB-01 2 105924612 105924612 G A TGFBRAP1 Silent p.F49F 0.16 TCGA-EB-A3XB-01 2 107450511 107450511 A G ST6GAL2 Silent p.N345N 0.16 TCGA-EB-A3XB-01 2 108627088 108627088 G A SLC5A7 Missense_Mutation p.G505E 0.27 tolerated(0.15) benign(0.321) TCGA-EB-A3XB-01 2 108910774 108910774 C T SULT1C2 Missense_Mutation p.P81S 0.14 deleterious(0.01) probably_damaging(0.944) TCGA-EB-A3XB-01 2 108910775 108910775 C T SULT1C2 Missense_Mutation p.P81L 0.15 deleterious(0) probably_damaging(0.985) TCGA-EB-A3XB-01 2 109527396 109527396 C T EDAR Intron 0.20 TCGA-EB-A3XB-01 2 113308578 113308578 A G POLR1B Missense_Mutation p.K254R 0.28 tolerated(0.06) benign(0.061) TCGA-EB-A3XB-01 2 116535379 116535379 G A DPP10 Missense_Mutation p.E448K 0.34 deleterious(0.02) possibly_damaging(0.667) TCGA-EB-A3XB-01 2 131356259 131356259 C T CFC1 Nonsense_Mutation p.W68* 0.10 TCGA-EB-A3XB-01 2 135745002 135745002 C T MAP3K19 Silent p.R480R 0.19 TCGA-EB-A3XB-01 2 137814011 137814011 G A THSD7B Missense_Mutation p.G54E 0.10 deleterious(0) probably_damaging(0.969) TCGA-EB-A3XB-01 2 138030126 138030126 C T THSD7B Nonsense_Mutation p.R764* 0.29 TCGA-EB-A3XB-01 2 138400102 138400102 G A THSD7B Missense_Mutation p.E1285K 0.21 deleterious(0.03) unknown(0) TCGA-EB-A3XB-01 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.16 deleterious(0.02) unknown(0) TCGA-EB-A3XB-01 2 141986800 141986800 C T LRP1B Missense_Mutation p.G268R 0.17 probably_damaging(0.953) TCGA-EB-A3XB-01 2 155102325 155102325 G A GALNT13 Silent p.R229R 0.15 TCGA-EB-A3XB-01 2 15555736 15555736 A G NBAS Silent p.Y957Y 0.36 TCGA-EB-A3XB-01 2 162661100 162661100 C T SLC4A10 Missense_Mutation p.S91F 0.29 deleterious(0.03) benign(0.044) TCGA-EB-A3XB-01 2 165542415 165542415 C T COBLL1 3'UTR 0.26 TCGA-EB-A3XB-01 2 166897748 166897748 C T SCN1A Missense_Mutation p.G803E 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 2 167160770 167160770 C T SCN9A Silent p.L222L 0.35 TCGA-EB-A3XB-01 2 169764269 169764269 C T G6PC2 Missense_Mutation p.H250Y 0.22 deleterious(0.01) possibly_damaging(0.828) TCGA-EB-A3XB-01 2 174820388 174820388 C T SP3 Silent p.Q284Q 0.17 TCGA-EB-A3XB-01 2 178372732 178372732 C T AGPS Missense_Mutation p.S527F 0.20 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XB-01 2 179432818 179432818 G A TTN Missense_Mutation p.P26014L 0.11 TCGA-EB-A3XB-01 2 179577224 179577224 G A TTN Missense_Mutation p.S9142L 0.34 TCGA-EB-A3XB-01 2 179590734 179590734 G A TTN Missense_Mutation p.T6772I 0.15 TCGA-EB-A3XB-01 2 179637892 179637892 C T TTN Missense_Mutation p.G2600E 0.33 TCGA-EB-A3XB-01 2 182423343 182423343 C T CERKL Missense_Mutation p.R283Q 0.31 tolerated(0.34) benign(0.001) TCGA-EB-A3XB-01 2 183032982 183032982 G A PDE1A Intron 0.30 TCGA-EB-A3XB-01 2 190593448 190593448 G A ANKAR Missense_Mutation p.G1032R 0.11 deleterious(0.02) probably_damaging(0.957) TCGA-EB-A3XB-01 2 215884366 215884366 G A ABCA12 Missense_Mutation p.T481I 0.16 tolerated(0.08) benign(0.197) TCGA-EB-A3XB-01 2 220504278 220504278 C T SLC4A3 Missense_Mutation p.S1060F 0.08 tolerated(0.69) possibly_damaging(0.571) TCGA-EB-A3XB-01 2 227946898 227946898 C T COL4A4 Silent p.K543K 0.34 TCGA-EB-A3XB-01 2 228169718 228169718 G A COL4A3 Missense_Mutation p.G1391S 0.15 unknown(0) TCGA-EB-A3XB-01 2 228881601 228881601 G A SPHKAP Silent p.I1323I 0.36 TCGA-EB-A3XB-01 2 230341907 230341907 C T DNER Missense_Mutation p.G404R 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-EB-A3XB-01 2 233349799 233349799 G A ECEL1 Silent p.I286I 0.39 TCGA-EB-A3XB-01 2 233394675 233394675 C T CHRND Missense_Mutation p.R216W 0.17 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XB-01 2 237172851 237172851 C T ASB18 Silent p.V46V 0.26 TCGA-EB-A3XB-01 2 237308114 237308114 C T IQCA1 Nonsense_Mutation p.W384* 0.17 TCGA-EB-A3XB-01 2 239025592 239025592 G A ESPNL Missense_Mutation p.E302K 0.19 tolerated(0.66) benign(0.158) TCGA-EB-A3XB-01 2 242038948 242038948 A G MTERFD2 Missense_Mutation p.I128T 0.35 tolerated(0.3) benign(0.057) TCGA-EB-A3XB-01 2 25505414 25505414 G A DNMT3A Missense_Mutation p.P115L 0.29 tolerated(0.11) benign(0.003) TCGA-EB-A3XB-01 2 26609386 26609386 C T EPT1 Silent p.I359I 0.27 TCGA-EB-A3XB-01 2 26676394 26676394 C T DRC1 Silent p.F632F 0.41 TCGA-EB-A3XB-01 2 27677285 27677285 C T IFT172 Missense_Mutation p.G1156S 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XB-01 2 30966427 30966427 G A CAPN13 Missense_Mutation p.P423S 0.15 deleterious(0.03) probably_damaging(0.964) TCGA-EB-A3XB-01 2 31604561 31604561 G A XDH Missense_Mutation p.P357L 0.21 tolerated(0.14) probably_damaging(0.989) TCGA-EB-A3XB-01 2 73718592 73718592 C T ALMS1 Missense_Mutation p.S3168F 0.34 benign(0.379) TCGA-EB-A3XB-01 2 74842228 74842228 G A M1AP Missense_Mutation p.R97C 0.20 deleterious(0.02) probably_damaging(0.975) TCGA-EB-A3XB-01 2 74842229 74842229 G A M1AP Silent p.L96L 0.20 TCGA-EB-A3XB-01 2 85894911 85894911 G A SFTPB Missense_Mutation p.S41F 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-EB-A3XB-01 2 88423893 88423893 G A FABP1 Intron 0.42 TCGA-EB-A3XB-01 2 90229375 90229375 C T IGKV1D-42 Silent p.S65S 0.07 TCGA-EB-A3XB-01 2 99156043 99156043 C T INPP4A Silent p.N241N 0.16 TCGA-EB-A3XB-01 3 10130575 10130575 C T FANCD2 Silent p.V1208V 0.28 TCGA-EB-A3XB-01 3 108211414 108211414 G A MYH15 Silent p.F288F 0.25 TCGA-EB-A3XB-01 3 108688560 108688560 A G MORC1 Missense_Mutation p.C854R 0.23 deleterious(0.04) benign(0.016) TCGA-EB-A3XB-01 3 119306546 119306546 C T ADPRH Missense_Mutation p.H299Y 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 3 121126303 121126303 C T STXBP5L Missense_Mutation p.A958V 0.31 tolerated(0.17) probably_damaging(0.999) TCGA-EB-A3XB-01 3 121658222 121658222 G A SLC15A2 Nonsense_Mutation p.W596* 0.30 TCGA-EB-A3XB-01 3 122631747 122631747 G A SEMA5B Silent p.L944L 0.06 TCGA-EB-A3XB-01 3 123010131 123010131 G A ADCY5 Silent p.F1052F 0.28 TCGA-EB-A3XB-01 3 124132416 124132416 C A KALRN Missense_Mutation p.H814N 0.35 deleterious(0) possibly_damaging(0.856) TCGA-EB-A3XB-01 3 126137312 126137312 G A CCDC37 Missense_Mutation p.E144K 0.33 tolerated(0.07) benign(0.037) TCGA-EB-A3XB-01 3 126181039 126181039 G A ZXDC Missense_Mutation p.P489L 0.20 tolerated(0.09) benign(0.382) TCGA-EB-A3XB-01 3 128181666 128181666 A G DNAJB8 Silent p.F141F 0.25 TCGA-EB-A3XB-01 3 131190074 131190074 G A MRPL3 Nonsense_Mutation p.Q227* 0.25 TCGA-EB-A3XB-01 3 131198001 131198001 A C MRPL3 Intron 0.14 TCGA-EB-A3XB-01 3 132433955 132433955 G A NPHP3 Nonsense_Mutation p.Q311* 0.25 TCGA-EB-A3XB-01 3 133099306 133099306 C T TMEM108 Nonsense_Mutation p.Q251* 0.20 TCGA-EB-A3XB-01 3 140281742 140281742 C T CLSTN2 Missense_Mutation p.R768W 0.29 deleterious(0) possibly_damaging(0.453) TCGA-EB-A3XB-01 3 14724592 14724592 C T C3orf20 Silent p.A124A 0.26 TCGA-EB-A3XB-01 3 14756895 14756895 C T C3orf20 Silent p.T471T 0.29 TCGA-EB-A3XB-01 3 155861154 155861154 G C KCNAB1 Intron 0.12 TCGA-EB-A3XB-01 3 158384261 158384261 G A LXN 3'UTR 0.16 TCGA-EB-A3XB-01 3 158787165 158787165 G A IQCJ 5'UTR 0.28 TCGA-EB-A3XB-01 3 161214630 161214630 T A OTOL1 Missense_Mutation p.I12N 0.21 deleterious(0) unknown(0) TCGA-EB-A3XB-01 3 16306245 16306245 G A DPH3 Intron 0.26 TCGA-EB-A3XB-01 3 18390671 18390671 C T SATB1 Silent p.L793L 0.30 TCGA-EB-A3XB-01 3 194080470 194080470 G A LRRC15 Missense_Mutation p.R441C 0.29 deleterious(0) possibly_damaging(0.847) TCGA-EB-A3XB-01 3 195453125 195453125 C T MUC20 Missense_Mutation p.P551S 0.10 tolerated(0.72) unknown(0) TCGA-EB-A3XB-01 3 195453126 195453126 C T MUC20 Missense_Mutation p.P551L 0.10 tolerated(0.38) unknown(0) TCGA-EB-A3XB-01 3 195501064 195501064 G A MUC4 Silent p.S4352S 0.22 TCGA-EB-A3XB-01 3 19554778 19554778 C T KCNH8 Missense_Mutation p.S799L 0.35 tolerated(0.1) benign(0.012) TCGA-EB-A3XB-01 3 26751770 26751770 G A LRRC3B Missense_Mutation p.D203N 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 3 36875201 36875201 C T TRANK1 Missense_Mutation p.R1914K 0.27 tolerated(0.09) benign(0.008) TCGA-EB-A3XB-01 3 38938469 38938469 G A SCN11A Missense_Mutation p.S757F 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 3 39433070 39433070 G A SLC25A38 Missense_Mutation p.V139I 0.25 tolerated(0.25) benign(0.107) TCGA-EB-A3XB-01 3 40275410 40275410 A T MYRIP Missense_Mutation p.T656S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A3XB-01 3 44489600 44489600 G A ZNF445 Silent p.A521A 0.20 TCGA-EB-A3XB-01 3 45048923 45048923 G A EXOSC7 Silent p.R209R 0.33 TCGA-EB-A3XB-01 3 49740938 49740938 C T RNF123 Missense_Mutation p.S610L 0.24 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XB-01 3 51367609 51367609 C T DOCK3 Missense_Mutation p.S1148L 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A3XB-01 3 52431033 52431033 C T DNAH1 Silent p.H3920H 0.42 TCGA-EB-A3XB-01 3 54930866 54930866 G A CACNA2D3 Silent p.G779G 0.24 TCGA-EB-A3XB-01 3 58104641 58104641 C T FLNB Missense_Mutation p.P930S 0.31 tolerated(0.07) benign(0.1) TCGA-EB-A3XB-01 3 65415739 65415739 G A MAGI1 Silent p.S541S 0.28 TCGA-EB-A3XB-01 3 67054506 67054506 C T KBTBD8 Missense_Mutation p.S372F 0.32 deleterious(0.02) possibly_damaging(0.608) TCGA-EB-A3XB-01 3 73432642 73432642 C T PDZRN3 Missense_Mutation p.M1025I 0.25 deleterious(0.04) probably_damaging(0.982) TCGA-EB-A3XB-01 3 77666905 77666905 G A ROBO2 Missense_Mutation p.D1195N 0.32 tolerated(0.06) possibly_damaging(0.539) TCGA-EB-A3XB-01 3 78695301 78695301 C T ROBO1 Missense_Mutation p.G960E 0.25 deleterious(0.01) benign(0.141) TCGA-EB-A3XB-01 3 8607335 8607335 T C LMCD1 Splice_Site p.X313_splice 0.21 TCGA-EB-A3XB-01 4 100205667 100205667 C T ADH1A Silent p.V152V 0.27 TCGA-EB-A3XB-01 4 106863615 106863615 C T NPNT Silent p.I335I 0.27 TCGA-EB-A3XB-01 4 122831503 122831503 C T TRPC3 Missense_Mutation p.G533E 0.28 deleterious(0.01) possibly_damaging(0.831) TCGA-EB-A3XB-01 4 126411967 126411967 C T FAT4 Missense_Mutation p.P4664S 0.28 probably_damaging(0.998) TCGA-EB-A3XB-01 4 128951697 128951697 C T C4orf29 Nonsense_Mutation p.Q371* 0.24 TCGA-EB-A3XB-01 4 13338397 13338397 C T HSP90AB2P RNA 0.32 TCGA-EB-A3XB-01 4 155226333 155226333 A G DCHS2 Silent p.L1316L 0.47 TCGA-EB-A3XB-01 4 155526125 155526125 G A FGG Missense_Mutation p.T408I 0.36 tolerated(0.22) probably_damaging(0.941) TCGA-EB-A3XB-01 4 155530869 155530869 G A FGG Silent p.Y193Y 0.37 TCGA-EB-A3XB-01 4 158281195 158281195 G A GRIA2 Missense_Mutation p.E731K 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A3XB-01 4 159554574 159554574 A G RXFP1 Missense_Mutation p.K306R 0.37 tolerated(1) benign(0.002) TCGA-EB-A3XB-01 4 169336585 169336585 G A DDX60L Missense_Mutation p.P985S 0.30 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XB-01 4 31144244 31144244 G A PCDH7 Missense_Mutation p.D1181N 0.13 tolerated(0.08) benign(0.173) TCGA-EB-A3XB-01 4 3237330 3237330 C T HTT Silent p.T2870T 0.43 TCGA-EB-A3XB-01 4 40356304 40356304 G A CHRNA9 Missense_Mutation p.D403N 0.41 tolerated(0.49) benign(0.002) TCGA-EB-A3XB-01 4 647567 647567 A G PDE6B Intron 0.50 TCGA-EB-A3XB-01 4 71508306 71508306 G A ENAM Missense_Mutation p.R388K 0.24 tolerated(0.33) probably_damaging(0.983) TCGA-EB-A3XB-01 4 72316221 72316221 G A SLC4A4 Missense_Mutation p.R390K 0.33 deleterious(0) benign(0.323) TCGA-EB-A3XB-01 4 79808307 79808307 C T BMP2K Intron 0.36 TCGA-EB-A3XB-01 4 80328367 80328367 G A GK2 Missense_Mutation p.R330C 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-EB-A3XB-01 4 85562048 85562048 G A CDS1 Missense_Mutation p.D313N 0.28 tolerated(0.1) benign(0.038) TCGA-EB-A3XB-01 4 86921945 86921945 G A ARHGAP24 3'UTR 0.22 TCGA-EB-A3XB-01 4 89680035 89680035 G A FAM13A Silent p.I532I 0.25 TCGA-EB-A3XB-01 4 91701664 91701664 G A CCSER1 Intron 0.29 TCGA-EB-A3XB-01 4 9446267 9446267 T C DEFB131 Missense_Mutation p.V3A 0.40 tolerated(0.26) benign(0.153) TCGA-EB-A3XB-01 5 100147736 100147736 C T ST8SIA4 Missense_Mutation p.G299R 0.24 probably_damaging(1) TCGA-EB-A3XB-01 5 101735415 101735415 C T SLCO6A1 Missense_Mutation p.G553E 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.20 TCGA-EB-A3XB-01 5 112399743 112399743 G A MCC Silent p.A717A 0.27 TCGA-EB-A3XB-01 5 112770528 112770528 G T TSSK1B Missense_Mutation p.D3E 0.29 tolerated(0.15) benign(0.083) TCGA-EB-A3XB-01 5 121758652 121758652 C T SNCAIP Missense_Mutation p.R74C 0.27 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XB-01 5 1282618 1282618 C T TERT Silent p.E565E 0.22 TCGA-EB-A3XB-01 5 134294749 134294749 G A PCBD2 Missense_Mutation p.R79Q 0.25 tolerated(0.08) benign(0.345) TCGA-EB-A3XB-01 5 135382142 135382142 C T TGFBI Silent p.T139T 0.11 TCGA-EB-A3XB-01 5 137622874 137622874 A C CDC25C Missense_Mutation p.L337R 0.21 tolerated(0.15) possibly_damaging(0.573) TCGA-EB-A3XB-01 5 13830235 13830235 G A DNAH5 Missense_Mutation p.S2050F 0.21 possibly_damaging(0.788) TCGA-EB-A3XB-01 5 138658408 138658408 G A MATR3 Missense_Mutation p.D634N 0.38 tolerated(0.22) benign(0.107) TCGA-EB-A3XB-01 5 13900333 13900333 C T DNAH5 Silent p.R747R 0.41 TCGA-EB-A3XB-01 5 139060139 139060139 G T CXXC5 Missense_Mutation p.A11S 0.33 tolerated_low_confidence(0.44) unknown(0) TCGA-EB-A3XB-01 5 140536963 140536963 G A PCDHB17 Missense_Mutation p.E463K 0.23 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-EB-A3XB-01 5 140562818 140562818 C T PCDHB16 Silent p.V228V 0.29 TCGA-EB-A3XB-01 5 140720533 140720533 C T PCDHGA2 Silent p.A665A 0.28 TCGA-EB-A3XB-01 5 140753756 140753756 C T PCDHGA6 Missense_Mutation p.P36S 0.19 tolerated_low_confidence(0.08) benign(0.344) TCGA-EB-A3XB-01 5 154267904 154267904 G A GEMIN5 Missense_Mutation p.L1465F 0.26 deleterious(0) probably_damaging(0.938) TCGA-EB-A3XB-01 5 156816406 156816406 C T CYFIP2 Silent p.I1113I 0.23 TCGA-EB-A3XB-01 5 15936681 15936681 G A FBXL7 Missense_Mutation p.E288K 0.29 tolerated(0.82) benign(0.007) TCGA-EB-A3XB-01 5 167182030 167182030 G A TENM2 Intron 0.24 TCGA-EB-A3XB-01 5 168244307 168244307 G A SLIT3 Missense_Mutation p.P264L 0.14 deleterious(0.04) benign(0.186) TCGA-EB-A3XB-01 5 177665662 177665662 C T COL23A1 3'UTR 0.22 TCGA-EB-A3XB-01 5 178199631 178199631 C T AACSP1 Intron 0.24 TCGA-EB-A3XB-01 5 178548751 178548751 C T ADAMTS2 Missense_Mutation p.R1030Q 0.22 tolerated(0.29) benign(0.27) TCGA-EB-A3XB-01 5 40936475 40936475 G A C7 Missense_Mutation p.D106N 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 5 66492539 66492539 C T CD180 5'UTR 0.27 TCGA-EB-A3XB-01 5 68665385 68665385 G A TAF9 Intron 0.25 TCGA-EB-A3XB-01 5 68665386 68665386 G A TAF9 Intron 0.25 TCGA-EB-A3XB-01 5 73163924 73163924 G A ARHGEF28 Splice_Site p.X766_splice 0.35 TCGA-EB-A3XB-01 5 74109782 74109782 G A FAM169A Silent p.L185L 0.25 TCGA-EB-A3XB-01 5 79095441 79095441 C T CMYA5 3'UTR 0.20 TCGA-EB-A3XB-01 5 79837609 79837609 C T FAM151B Silent p.N263N 0.21 TCGA-EB-A3XB-01 5 90050957 90050957 G A GPR98 Missense_Mutation p.M3845I 0.21 benign(0.38) TCGA-EB-A3XB-01 5 90670798 90670798 G A ARRDC3 Missense_Mutation p.P271S 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 6 111693857 111693857 C T REV3L Missense_Mutation p.E1901K 0.39 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XB-01 6 117898627 117898627 G A GOPC Missense_Mutation p.P153L 0.52 tolerated(0.51) benign(0.001) TCGA-EB-A3XB-01 6 133100506 133100506 G T SLC18B1 Silent p.I232I 0.44 TCGA-EB-A3XB-01 6 155764442 155764442 C T NOX3 Missense_Mutation p.E151K 0.47 tolerated(0.07) probably_damaging(0.972) TCGA-EB-A3XB-01 6 16326932 16326932 G A ATXN1 Missense_Mutation p.A537V 0.11 deleterious(0.03) benign(0.118) TCGA-EB-A3XB-01 6 28542786 28542786 C T SCAND3 Missense_Mutation p.E566K 0.33 deleterious_low_confidence(0.02) benign(0.146) TCGA-EB-A3XB-01 6 30124747 30124747 G A TRIM10 Silent p.L288L 0.20 TCGA-EB-A3XB-01 6 32821443 32821443 C T TAP1 Missense_Mutation p.G51S 0.38 deleterious_low_confidence(0) benign(0.006) TCGA-EB-A3XB-01 6 33409113 33409113 C T SYNGAP1 Missense_Mutation p.H693Y 0.07 deleterious(0.02) benign(0.335) TCGA-EB-A3XB-01 6 33626514 33626514 A G ITPR3 Missense_Mutation p.N146S 0.20 deleterious(0) benign(0.38) TCGA-EB-A3XB-01 6 33626515 33626515 C T ITPR3 Silent p.N146N 0.20 TCGA-EB-A3XB-01 6 36107263 36107263 C T MAPK13 3'UTR 0.31 TCGA-EB-A3XB-01 6 36269880 36269880 G A PNPLA1 Missense_Mutation p.E340K 0.22 tolerated_low_confidence(0.09) benign(0.011) TCGA-EB-A3XB-01 6 36979536 36979536 G A FGD2 Missense_Mutation p.D145N 0.27 tolerated(0.07) possibly_damaging(0.805) TCGA-EB-A3XB-01 6 39832813 39832813 G A DAAM2 Missense_Mutation p.E131K 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-EB-A3XB-01 6 43222803 43222803 G A TTBK1 Missense_Mutation p.G198E 0.32 probably_damaging(0.993) TCGA-EB-A3XB-01 6 43251398 43251398 G A TTBK1 Missense_Mutation p.G974R 0.26 benign(0.004) TCGA-EB-A3XB-01 6 43316185 43316185 G C ZNF318 Missense_Mutation p.N983K 0.22 benign(0.417) TCGA-EB-A3XB-01 6 47541893 47541893 G A CD2AP Missense_Mutation p.R212Q 0.28 tolerated(0.07) benign(0.192) TCGA-EB-A3XB-01 6 51712650 51712650 G A PKHD1 Missense_Mutation p.P2677L 0.24 tolerated(0.42) benign(0.005) TCGA-EB-A3XB-01 6 57372336 57372336 C T PRIM2 Missense_Mutation p.P248S 0.07 tolerated(0.07) probably_damaging(0.99) TCGA-EB-A3XB-01 6 74062931 74062931 C T DPPA5 3'UTR 0.39 TCGA-EB-A3XB-01 6 76024398 76024398 G A FILIP1 Nonsense_Mutation p.R384* 0.17 TCGA-EB-A3XB-01 6 87725903 87725903 C T HTR1E Missense_Mutation p.T284I 0.42 deleterious(0.03) benign(0.063) TCGA-EB-A3XB-01 6 87725904 87725904 C T HTR1E Silent p.T284T 0.41 TCGA-EB-A3XB-01 6 96054338 96054338 C T MANEA 3'UTR 0.67 TCGA-EB-A3XB-01 7 100417783 100417783 G A EPHB4 Missense_Mutation p.P315L 0.28 tolerated(0.08) benign(0.001) TCGA-EB-A3XB-01 7 103183261 103183261 G A RELN Silent p.I2196I 0.25 TCGA-EB-A3XB-01 7 107746996 107746996 G A LAMB4 Missense_Mutation p.P205S 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 7 11446665 11446665 G A THSD7A Nonsense_Mutation p.R1312* 0.23 TCGA-EB-A3XB-01 7 122341965 122341965 G A RNF148 Silent p.F280F 0.41 TCGA-EB-A3XB-01 7 128445894 128445894 G A CCDC136 Missense_Mutation p.R343K 0.34 tolerated(0.25) benign(0.044) TCGA-EB-A3XB-01 7 134871889 134871889 G A WDR91 Silent p.L638L 0.17 TCGA-EB-A3XB-01 7 138849938 138849938 C T TTC26 Missense_Mutation p.P285S 0.19 deleterious(0.04) benign(0.164) TCGA-EB-A3XB-01 7 140373685 140373685 C T ADCK2 Silent p.F185F 0.21 TCGA-EB-A3XB-01 7 140404690 140404690 T C NDUFB2 Missense_Mutation p.W92R 0.21 deleterious(0) probably_damaging(0.98) TCGA-EB-A3XB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-EB-A3XB-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.44 deleterious(0) possibly_damaging(0.838) TCGA-EB-A3XB-01 7 141957584 141957584 G A PRSS58 5'UTR 0.48 TCGA-EB-A3XB-01 7 142028558 142028558 G A TRBV6-1 Missense_Mutation p.E98K 0.21 tolerated(0.18) benign(0.055) TCGA-EB-A3XB-01 7 142457350 142457350 G A PRSS1 Silent p.L5L 0.18 TCGA-EB-A3XB-01 7 142459645 142459645 G A PRSS1 Missense_Mutation p.G74E 0.13 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 7 142481834 142481834 T C PRSS3P2 RNA 0.06 TCGA-EB-A3XB-01 7 142638257 142638257 G A KEL 3'UTR 0.22 TCGA-EB-A3XB-01 7 143018857 143018857 G A CLCN1 Silent p.K204K 0.21 TCGA-EB-A3XB-01 7 143826335 143826335 A T OR2A14 Missense_Mutation p.I44F 0.21 deleterious(0) probably_damaging(0.976) TCGA-EB-A3XB-01 7 147092805 147092805 G A CNTNAP2 Missense_Mutation p.E535K 0.45 tolerated(0.31) benign(0.03) TCGA-EB-A3XB-01 7 147092819 147092819 G A CNTNAP2 Silent p.R539R 0.16 TCGA-EB-A3XB-01 7 148481127 148481127 C T CUL1 Missense_Mutation p.P419L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XB-01 7 148768537 148768537 G A ZNF786 Missense_Mutation p.H443Y 0.25 deleterious(0) probably_damaging(0.989) TCGA-EB-A3XB-01 7 150171553 150171553 G A GIMAP8 Missense_Mutation p.R379K 0.17 tolerated(1) benign(0.013) TCGA-EB-A3XB-01 7 150439301 150439301 C T GIMAP5 Missense_Mutation p.P25L 0.18 tolerated(0.21) benign(0.002) TCGA-EB-A3XB-01 7 150439439 150439439 G A GIMAP5 Missense_Mutation p.G71E 0.46 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XB-01 7 150554221 150554221 G A AOC1 Silent p.V221V 0.17 TCGA-EB-A3XB-01 7 19765341 19765341 C T TMEM196 Silent p.L85L 0.23 TCGA-EB-A3XB-01 7 23825111 23825111 C T STK31 Silent p.L721L 0.25 TCGA-EB-A3XB-01 7 2687458 2687458 C T TTYH3 Intron 0.44 TCGA-EB-A3XB-01 7 2946352 2946352 C T CARD11 Missense_Mutation p.E1129K 0.25 deleterious(0.03) possibly_damaging(0.611) TCGA-EB-A3XB-01 7 2946353 2946353 T C CARD11 Silent p.V1128V 0.26 TCGA-EB-A3XB-01 7 30701805 30701805 C T CRHR2 Nonsense_Mutation p.W269* 0.26 TCGA-EB-A3XB-01 7 44747192 44747192 C T OGDH Silent p.F936F 0.26 TCGA-EB-A3XB-01 7 5922155 5922155 C T OCM Silent p.F31F 0.28 TCGA-EB-A3XB-01 7 63809491 63809491 G A ZNF736 Missense_Mutation p.R417K 0.37 tolerated(0.53) benign(0.01) TCGA-EB-A3XB-01 7 76610427 76610427 C G UPK3B Intron 0.23 TCGA-EB-A3XB-01 7 76610428 76610428 C T UPK3B Intron 0.25 TCGA-EB-A3XB-01 7 76826089 76826089 C T FGL2 Missense_Mutation p.G276E 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 7 82581636 82581636 C T PCLO Missense_Mutation p.G2878D 0.24 unknown(0) TCGA-EB-A3XB-01 7 92732551 92732551 C T SAMD9 Missense_Mutation p.E954K 0.34 tolerated(0.06) benign(0.243) TCGA-EB-A3XB-01 7 99032606 99032606 T A ATP5J2-PTCD1 Missense_Mutation p.E136V 0.28 tolerated(0.19) benign(0.061) TCGA-EB-A3XB-01 7 99709600 99709600 G A TAF6 Missense_Mutation p.T285M 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-EB-A3XB-01 7 99709601 99709601 T A TAF6 Missense_Mutation p.T285S 0.29 tolerated(0.41) benign(0.159) TCGA-EB-A3XB-01 8 103291146 103291146 G A UBR5 Missense_Mutation p.L2066F 0.27 deleterious(0) probably_damaging(0.942) TCGA-EB-A3XB-01 8 106815518 106815518 G A ZFPM2 Missense_Mutation p.E1070K 0.26 tolerated_low_confidence(0.28) benign(0.033) TCGA-EB-A3XB-01 8 11301671 11301671 G A FAM167A Missense_Mutation p.P84S 0.17 tolerated(0.29) benign(0.007) TCGA-EB-A3XB-01 8 113518989 113518989 G A CSMD3 Missense_Mutation p.P1609L 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 8 113569023 113569025 CCT TC CSMD3 Frame_Shift_Del p.R1401Efs*44 0.29 TCGA-EB-A3XB-01 8 11407720 11407720 C A BLK Missense_Mutation p.P141T 0.23 deleterious(0.04) possibly_damaging(0.665) TCGA-EB-A3XB-01 8 119209783 119209783 C T SAMD12 3'UTR 0.37 TCGA-EB-A3XB-01 8 133925499 133925499 G T TG Missense_Mutation p.G1456V 0.33 tolerated(0.24) benign(0.013) TCGA-EB-A3XB-01 8 139151309 139151309 G A FAM135B Missense_Mutation p.S1274F 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 8 139601433 139601433 C T COL22A1 3'UTR 0.33 TCGA-EB-A3XB-01 8 142367842 142367842 C T GPR20 Missense_Mutation p.G61E 0.26 tolerated(0.26) benign(0.157) TCGA-EB-A3XB-01 8 143960822 143960822 C T CYP11B1 Intron 0.20 TCGA-EB-A3XB-01 8 144874420 144874420 G A SCRIB Missense_Mutation p.A1495V 0.27 probably_damaging(0.997) TCGA-EB-A3XB-01 8 144943626 144943626 C T EPPK1 Missense_Mutation p.V1266M 0.45 benign(0.001) TCGA-EB-A3XB-01 8 144946003 144946003 C T EPPK1 Silent p.R473R 0.29 TCGA-EB-A3XB-01 8 145107471 145107471 G A OPLAH Missense_Mutation p.P1062S 0.36 deleterious(0) probably_damaging(0.941) TCGA-EB-A3XB-01 8 17941669 17941669 C T ASAH1 Intron 0.33 TCGA-EB-A3XB-01 8 2005561 2005561 C T MYOM2 Missense_Mutation p.S120F 0.33 deleterious(0.04) benign(0.157) TCGA-EB-A3XB-01 8 23049204 23049204 C T TNFRSF10A 3'UTR 0.34 TCGA-EB-A3XB-01 8 2830821 2830821 C T CSMD1 Missense_Mutation p.G2914E 0.23 probably_damaging(0.999) TCGA-EB-A3XB-01 8 30938609 30938609 A G WRN Missense_Mutation p.K356E 0.40 tolerated(0.95) benign(0.002) TCGA-EB-A3XB-01 8 30941224 30941224 C T WRN Missense_Mutation p.P427S 0.15 tolerated(1) benign(0.003) TCGA-EB-A3XB-01 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.29 probably_damaging(0.999) TCGA-EB-A3XB-01 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.40 TCGA-EB-A3XB-01 8 53044632 53044632 G A ST18 Missense_Mutation p.P851L 0.31 tolerated(0.63) benign(0.013) TCGA-EB-A3XB-01 8 56436024 56436024 C T XKR4 Silent p.F397F 0.26 TCGA-EB-A3XB-01 8 62371076 62371076 G A CLVS1 Missense_Mutation p.E318K 0.47 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A3XB-01 8 73480417 73480417 G A KCNB2 Missense_Mutation p.E150K 0.21 deleterious(0) possibly_damaging(0.892) TCGA-EB-A3XB-01 8 73848616 73848616 G A KCNB2 Silent p.L342L 0.24 TCGA-EB-A3XB-01 8 77618548 77618548 C T ZFHX4 Missense_Mutation p.S742F 0.33 possibly_damaging(0.683) TCGA-EB-A3XB-01 8 77765601 77765601 T C ZFHX4 Silent p.F2148F 0.22 TCGA-EB-A3XB-01 8 79710406 79710406 G A IL7 Silent p.I16I 0.38 TCGA-EB-A3XB-01 8 87656025 87656025 C T CNGB3 Missense_Mutation p.E378K 0.25 deleterious(0.01) possibly_damaging(0.714) TCGA-EB-A3XB-01 8 92972487 92972487 C T RUNX1T1 Missense_Mutation p.E611K 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-EB-A3XB-01 9 107266729 107266729 C T OR13F1 Silent p.F62F 0.42 TCGA-EB-A3XB-01 9 107331595 107331595 C T OR13C8 Silent p.I49I 0.40 TCGA-EB-A3XB-01 9 112918598 112918598 G A PALM2-AKAP2 Splice_Site p.X999_splice 0.44 TCGA-EB-A3XB-01 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 9 131151609 131151609 C T URM1 Silent p.I86I 0.32 TCGA-EB-A3XB-01 9 132590395 132590395 G A C9orf78 3'UTR 0.37 TCGA-EB-A3XB-01 9 138376876 138376876 C T PPP1R26 Missense_Mutation p.P174S 0.42 tolerated(0.1) probably_damaging(0.932) TCGA-EB-A3XB-01 9 139658947 139658947 C T LCN15 5'UTR 0.37 TCGA-EB-A3XB-01 9 33385019 33385019 G A AQP7 Missense_Mutation p.A338V 0.36 tolerated_low_confidence(0.48) benign(0.024) TCGA-EB-A3XB-01 9 35092452 35092452 G A PIGO Missense_Mutation p.P478S 0.36 tolerated(0.4) benign(0) TCGA-EB-A3XB-01 9 71606154 71606154 C T PIP5K1B Missense_Mutation p.S534F 0.42 deleterious_low_confidence(0) benign(0.154) TCGA-EB-A3XB-01 X 100505506 100505506 G A DRP2 Silent p.L545L 0.59 TCGA-EB-A3XB-01 X 101572421 101572421 C T NXF2 Missense_Mutation p.P107S 0.33 tolerated(0.32) benign(0.007) TCGA-EB-A3XB-01 X 110644384 110644384 T C DCX Missense_Mutation p.K261R 0.57 tolerated(0.3) possibly_damaging(0.731) TCGA-EB-A3XB-01 X 113865328 113865328 C T HTR2C Intron 0.50 TCGA-EB-A3XB-01 X 115304477 115304477 C T AGTR2 Missense_Mutation p.P315L 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A3XB-01 X 118147032 118147032 C T LONRF3 Silent p.I614I 0.57 TCGA-EB-A3XB-01 X 118786967 118786967 G A SEPT6 Silent p.F126F 0.65 TCGA-EB-A3XB-01 X 119004541 119004541 A G RNF113A 3'UTR 0.26 TCGA-EB-A3XB-01 X 130218990 130218990 G A ARHGAP36 Missense_Mutation p.D303N 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A3XB-01 X 132160102 132160102 G A USP26 Missense_Mutation p.P716L 0.53 deleterious(0.04) benign(0.007) TCGA-EB-A3XB-01 X 135631080 135631080 G A VGLL1 Missense_Mutation p.E183K 0.59 deleterious(0.03) benign(0.221) TCGA-EB-A3XB-01 X 153197787 153197787 G A NAA10 Missense_Mutation p.S108F 0.32 deleterious(0) probably_damaging(0.964) TCGA-EB-A3XB-01 X 153416195 153416195 G A OPN1LW Missense_Mutation p.M60I 0.46 deleterious(0.02) benign(0.091) TCGA-EB-A3XB-01 X 155239662 155239662 G A IL9R Missense_Mutation p.G385E 0.14 tolerated(0.35) benign(0.076) TCGA-EB-A3XB-01 X 24608226 24608226 C T PCYT1B Missense_Mutation p.E134K 0.10 deleterious(0) probably_damaging(0.971) TCGA-EB-A3XB-01 X 28807516 28807516 T A IL1RAPL1 Nonsense_Mutation p.L19* 0.55 TCGA-EB-A3XB-01 X 3227866 3227866 C T MXRA5 Missense_Mutation p.G2793E 0.09 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XB-01 X 50122723 50122723 C T DGKK RNA 0.52 TCGA-EB-A3XB-01 X 84526599 84526599 G A ZNF711 Missense_Mutation p.G684E 0.60 tolerated(0.19) probably_damaging(0.988) TCGA-EB-A3XB-01 X 91133636 91133636 G A PCDH11X Silent p.E799E 0.61 TCGA-EB-A3XB-01 Y 24052532 24052532 C T RBMY1E Missense_Mutation p.R285Q 0.19 tolerated(0.25) benign(0.153) TCGA-EB-A3XC-01 10 103573348 103573348 G A MGEA5 Missense_Mutation p.P72L 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 10 115540378 115540378 C T PLEKHS1 3'Flank 0.44 TCGA-EB-A3XC-01 10 21309123 21309123 G A NEBL Missense_Mutation p.P24S 0.57 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 10 25279504 25279504 C T ENKUR Missense_Mutation p.R161Q 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A3XC-01 10 30655296 30655296 C T AL161651.1 5'Flank 0.75 TCGA-EB-A3XC-01 10 33496585 33496585 G A NRP1 Silent p.S558S 0.29 TCGA-EB-A3XC-01 10 37507968 37507968 G A ANKRD30A Missense_Mutation p.E1054K 0.46 deleterious(0) possibly_damaging(0.636) TCGA-EB-A3XC-01 10 43883367 43883367 G A HNRNPF 5'UTR 0.57 TCGA-EB-A3XC-01 10 50531908 50531908 C T C10orf71 Missense_Mutation p.P440S 0.61 tolerated(0.17) probably_damaging(1) TCGA-EB-A3XC-01 10 50732687 50732687 G A ERCC6-PGBD3 Silent p.I263I 0.60 TCGA-EB-A3XC-01 10 74684327 74684327 G A OIT3 Missense_Mutation p.S431N 0.62 tolerated(0.18) benign(0.014) TCGA-EB-A3XC-01 11 1018563 1018563 C T MUC6 Missense_Mutation p.G1413E 0.26 unknown(0) TCGA-EB-A3XC-01 11 103128437 103128437 C T DYNC2H1 Missense_Mutation p.A3528V 0.42 benign(0.312) TCGA-EB-A3XC-01 11 10673657 10673657 G A MRVI1 Missense_Mutation p.S47F 0.35 deleterious_low_confidence(0) benign(0.019) TCGA-EB-A3XC-01 11 108139321 108139321 C T ATM Silent p.S941S 0.55 TCGA-EB-A3XC-01 11 117351971 117351971 G A DSCAML1 Silent p.D918D 0.54 TCGA-EB-A3XC-01 11 121429346 121429346 C T SORL1 Missense_Mutation p.R904W 0.52 deleterious(0) probably_damaging(0.988) TCGA-EB-A3XC-01 11 124179843 124179843 A T OR8D1 Missense_Mutation p.S274T 0.06 deleterious(0.03) probably_damaging(0.93) TCGA-EB-A3XC-01 11 129744415 129744415 G A NFRKB Missense_Mutation p.P705L 0.51 deleterious(0.04) unknown(0) TCGA-EB-A3XC-01 11 14101530 14101530 G A SPON1 RNA 0.51 TCGA-EB-A3XC-01 11 15994292 15994292 T C SOX6 3'UTR 0.36 TCGA-EB-A3XC-01 11 18591776 18591776 G A UEVLD Silent p.L114L 0.29 TCGA-EB-A3XC-01 11 20940837 20940837 G A NELL1 Missense_Mutation p.G239E 0.40 tolerated(0.1) possibly_damaging(0.714) TCGA-EB-A3XC-01 11 26743263 26743263 T C SLC5A12 5'UTR 0.19 TCGA-EB-A3XC-01 11 32605406 32605406 G T EIF3M 5'UTR 0.32 TCGA-EB-A3XC-01 11 33881075 33881075 G A LMO2 Missense_Mutation p.R171C 0.29 deleterious(0.04) possibly_damaging(0.776) TCGA-EB-A3XC-01 11 34533114 34533114 C T ELF5 Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.39) benign(0) TCGA-EB-A3XC-01 11 3688605 3688605 G A CHRNA10 Missense_Mutation p.S251L 0.32 deleterious(0) probably_damaging(0.956) TCGA-EB-A3XC-01 11 47298378 47298378 C T MADD Silent p.I353I 0.39 TCGA-EB-A3XC-01 11 47436977 47436977 C T SLC39A13 3'UTR 0.33 TCGA-EB-A3XC-01 11 47436978 47436978 C T SLC39A13 3'UTR 0.33 TCGA-EB-A3XC-01 11 48238898 48238898 C T OR4B1 Silent p.L179L 0.34 TCGA-EB-A3XC-01 11 4869796 4869796 C T OR51S1 Missense_Mutation p.G215S 0.38 deleterious(0.01) possibly_damaging(0.527) TCGA-EB-A3XC-01 11 4967631 4967631 C T OR51A4 Missense_Mutation p.E234K 0.34 deleterious(0.02) benign(0.33) TCGA-EB-A3XC-01 11 55703727 55703727 C T OR5I1 Silent p.L50L 0.35 TCGA-EB-A3XC-01 11 58034359 58034359 G A OR10W1 3'UTR 0.37 TCGA-EB-A3XC-01 11 58477473 58477473 C T GLYAT Nonsense_Mutation p.W219* 0.34 TCGA-EB-A3XC-01 11 5906375 5906375 C T OR52E4 Missense_Mutation p.P285S 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 11 59271556 59271556 G A OR4D11 Missense_Mutation p.G170R 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 11 60073666 60073666 C T MS4A4A Missense_Mutation p.P214S 0.35 tolerated(0.47) benign(0.041) TCGA-EB-A3XC-01 11 6007852 6007852 G A OR52L1 Silent p.L103L 0.31 TCGA-EB-A3XC-01 11 60704047 60704047 C T TMEM132A Missense_Mutation p.P915S 0.29 tolerated(0.33) benign(0.009) TCGA-EB-A3XC-01 11 62521071 62521071 G A ZBTB3 Silent p.F72F 0.41 TCGA-EB-A3XC-01 11 63078589 63078589 G A SLC22A10 3'UTR 0.22 TCGA-EB-A3XC-01 11 63137465 63137465 C T SLC22A9 5'UTR 0.42 TCGA-EB-A3XC-01 11 64435984 64435984 C T NRXN2 Silent p.G430G 0.39 TCGA-EB-A3XC-01 11 6638859 6638859 G A TPP1 Silent p.I126I 0.38 TCGA-EB-A3XC-01 11 6651076 6651076 G A DCHS1 Missense_Mutation p.A1621V 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-EB-A3XC-01 11 66555725 66555725 C G C11orf80 Missense_Mutation p.F206L 0.15 tolerated(0.14) possibly_damaging(0.682) TCGA-EB-A3XC-01 11 67400487 67400487 C T TBX10 Missense_Mutation p.E213K 0.32 tolerated(0.11) benign(0.051) TCGA-EB-A3XC-01 11 71259790 71259790 G A KRTAP5-9 Silent p.R29R 0.15 TCGA-EB-A3XC-01 11 71511619 71511619 C T FAM86C1 3'UTR 0.28 TCGA-EB-A3XC-01 11 75160596 75160596 G A GDPD5 Silent p.I178I 0.44 TCGA-EB-A3XC-01 11 82877715 82877715 G T PCF11 Missense_Mutation p.K592N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A3XC-01 11 89431734 89431734 G A FOLH1B RNA 0.38 TCGA-EB-A3XC-01 11 92085822 92085822 G A FAT3 Missense_Mutation p.A182T 0.40 probably_damaging(1) TCGA-EB-A3XC-01 11 92532441 92532441 C A FAT3 Missense_Mutation p.P2088T 0.22 probably_damaging(1) TCGA-EB-A3XC-01 11 93837846 93837846 G A HEPHL1 Silent p.K945K 0.36 TCGA-EB-A3XC-01 12 101368623 101368623 G A ANO4 Silent p.R151R 0.28 TCGA-EB-A3XC-01 12 108169092 108169092 A T ASCL4 Missense_Mutation p.R34W 0.40 deleterious(0) probably_damaging(0.969) TCGA-EB-A3XC-01 12 109968439 109968439 G A UBE3B Silent p.P966P 0.29 TCGA-EB-A3XC-01 12 109968440 109968440 G A UBE3B Missense_Mutation p.D967N 0.30 deleterious(0.03) benign(0.027) TCGA-EB-A3XC-01 12 113384616 113384616 C T OAS3 Silent p.F235F 0.42 TCGA-EB-A3XC-01 12 120241108 120241108 G A CIT Silent p.S399S 0.38 TCGA-EB-A3XC-01 12 120613963 120613963 A C GCN1L1 Missense_Mutation p.I299S 0.29 possibly_damaging(0.623) TCGA-EB-A3XC-01 12 123343991 123343991 C T HIP1R Silent p.L772L 0.26 TCGA-EB-A3XC-01 12 124272418 124272418 G A DNAH10 Missense_Mutation p.A436T 0.36 benign(0.006) TCGA-EB-A3XC-01 12 12630862 12630862 C T DUSP16 Silent p.Q301Q 0.38 TCGA-EB-A3XC-01 12 131620671 131620671 T A GPR133 Missense_Mutation p.V786D 0.36 deleterious(0) possibly_damaging(0.824) TCGA-EB-A3XC-01 12 18534812 18534812 C T PIK3C2G Nonsense_Mutation p.Q624* 0.11 TCGA-EB-A3XC-01 12 21033868 21033868 G A SLCO1B3 Missense_Mutation p.E471K 0.37 deleterious(0) probably_damaging(0.99) TCGA-EB-A3XC-01 12 2763042 2763042 C T CACNA1C Silent p.F1420F 0.46 TCGA-EB-A3XC-01 12 32480404 32480404 G A BICD1 Missense_Mutation p.E339K 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 12 33030997 33030997 G A PKP2 Missense_Mutation p.P273S 0.35 tolerated(0.6) benign(0.009) TCGA-EB-A3XC-01 12 44915951 44915951 G A NELL2 Silent p.F719F 0.31 TCGA-EB-A3XC-01 12 47172327 47172327 C T SLC38A4 Missense_Mutation p.S317N 0.30 tolerated(0.5) benign(0.003) TCGA-EB-A3XC-01 12 49065606 49065606 G A KANSL2 Missense_Mutation p.R229C 0.31 tolerated(0.12) possibly_damaging(0.676) TCGA-EB-A3XC-01 12 49176937 49176937 G A ADCY6 Missense_Mutation p.T94I 0.28 tolerated(0.17) benign(0.008) TCGA-EB-A3XC-01 12 49412649 49412649 G A PRKAG1 5'Flank 0.45 TCGA-EB-A3XC-01 12 51771007 51771007 G A GALNT6 Silent p.I212I 0.31 TCGA-EB-A3XC-01 12 54396347 54396347 G A HOXC9 Silent p.E224E 0.16 TCGA-EB-A3XC-01 12 55759190 55759190 T C OR6C75 Missense_Mutation p.L99P 0.38 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-EB-A3XC-01 12 55794585 55794585 C A OR6C65 Silent p.S91S 0.35 TCGA-EB-A3XC-01 12 56230836 56230836 G T MMP19 Missense_Mutation p.T504N 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A3XC-01 12 56626602 56626602 C T SLC39A5 Silent p.L139L 0.18 TCGA-EB-A3XC-01 12 58152437 58152437 G A MARCH9 Silent p.K266K 0.50 TCGA-EB-A3XC-01 12 71002892 71002892 C G PTPRB Missense_Mutation p.R312S 0.15 tolerated(0.06) benign(0.062) TCGA-EB-A3XC-01 12 7177615 7177615 G A C1S Missense_Mutation p.R576K 0.39 tolerated(0.3) benign(0.03) TCGA-EB-A3XC-01 12 71928963 71928963 C T LGR5 Missense_Mutation p.S142F 0.18 deleterious(0) possibly_damaging(0.898) TCGA-EB-A3XC-01 12 71928964 71928964 C T LGR5 Silent p.S142S 0.18 TCGA-EB-A3XC-01 12 85449594 85449594 G A LRRIQ1 Silent p.E341E 0.27 TCGA-EB-A3XC-01 12 86373294 86373294 C T MGAT4C Missense_Mutation p.D404N 0.32 tolerated(0.13) probably_damaging(0.95) TCGA-EB-A3XC-01 12 8666217 8666217 G A CLEC4D 5'UTR 0.35 TCGA-EB-A3XC-01 13 102105249 102105249 C T ITGBL1 Missense_Mutation p.S22L 0.10 tolerated_low_confidence(0.06) benign(0.02) TCGA-EB-A3XC-01 13 102235631 102235631 C T ITGBL1 Missense_Mutation p.H265Y 0.15 tolerated(0.26) probably_damaging(0.943) TCGA-EB-A3XC-01 13 108518128 108518128 G A FAM155A Missense_Mutation p.H273Y 0.57 deleterious(0.05) probably_damaging(0.986) TCGA-EB-A3XC-01 13 108518129 108518129 G A FAM155A Silent p.D272D 0.57 TCGA-EB-A3XC-01 13 21215482 21215482 A G IFT88 Missense_Mutation p.K552E 0.61 deleterious(0) probably_damaging(0.944) TCGA-EB-A3XC-01 13 23907707 23907707 G A SACS Silent p.I3436I 0.08 TCGA-EB-A3XC-01 13 23912519 23912519 A C SACS Missense_Mutation p.F1832L 0.49 probably_damaging(0.977) TCGA-EB-A3XC-01 13 26788241 26788241 A T RNF6 Nonsense_Mutation p.L593* 0.51 TCGA-EB-A3XC-01 13 39261635 39261635 G A FREM2 Missense_Mutation p.G52S 0.43 tolerated_low_confidence(0.16) benign(0.001) TCGA-EB-A3XC-01 13 39261636 39261636 G A FREM2 Missense_Mutation p.G52D 0.43 tolerated_low_confidence(0.28) benign(0.001) TCGA-EB-A3XC-01 13 42830599 42830599 G A FHP1 RNA 0.19 TCGA-EB-A3XC-01 13 53422059 53422059 G A PCDH8 Silent p.T171T 0.25 TCGA-EB-A3XC-01 13 73284425 73284425 A G MZT1 3'UTR 0.04 TCGA-EB-A3XC-01 13 95726484 95726484 G A ABCC4 Silent p.S967S 0.32 TCGA-EB-A3XC-01 14 101439963 101439963 G - SNORD114-16 RNA 0.23 TCGA-EB-A3XC-01 14 105406529 105406529 G A AHNAK2 Missense_Mutation p.L5087F 0.39 possibly_damaging(0.86) TCGA-EB-A3XC-01 14 106405705 106405705 C T IGHV6-1 Missense_Mutation p.R90Q 0.41 deleterious(0.05) benign(0.285) TCGA-EB-A3XC-01 14 20404285 20404285 C T OR4K1 Missense_Mutation p.L154F 0.19 tolerated(0.07) probably_damaging(0.968) TCGA-EB-A3XC-01 14 20528275 20528275 A C OR4L1 Missense_Mutation p.Q24H 0.03 deleterious(0) benign(0.031) TCGA-EB-A3XC-01 14 23946722 23946722 C T NGDN Missense_Mutation p.P294L 0.45 deleterious(0.01) unknown(0) TCGA-EB-A3XC-01 14 26949237 26949237 T G NOVA1 Missense_Mutation p.E131D 0.11 tolerated(0.15) unknown(0) TCGA-EB-A3XC-01 14 35254990 35254995 CAAATC - BAZ1A In_Frame_Del p.D607_L608del 0.41 TCGA-EB-A3XC-01 14 45603718 45603718 C A FKBP3 5'UTR 0.23 TCGA-EB-A3XC-01 14 45603719 45603719 C T FKBP3 5'UTR 0.24 TCGA-EB-A3XC-01 14 45603720 45603720 C T FKBP3 5'UTR 0.24 TCGA-EB-A3XC-01 14 60938447 60938447 G A C14orf39 Missense_Mutation p.H112Y 0.32 deleterious(0) possibly_damaging(0.607) TCGA-EB-A3XC-01 14 61920061 61920061 C T PRKCH Missense_Mutation p.S317F 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-EB-A3XC-01 14 65233410 65233410 C T SPTB Intron 0.40 TCGA-EB-A3XC-01 14 65233411 65233411 C T SPTB Intron 0.40 TCGA-EB-A3XC-01 14 68035871 68035871 C T PLEKHH1 Missense_Mutation p.A427V 0.32 deleterious(0) benign(0.311) TCGA-EB-A3XC-01 14 79432380 79432380 G A NRXN3 Missense_Mutation p.G430E 0.23 deleterious(0) probably_damaging(0.96) TCGA-EB-A3XC-01 14 94063865 94063865 C T UNC79 Silent p.T940T 0.53 TCGA-EB-A3XC-01 14 94120193 94120193 G A UNC79 Silent p.T1925T 0.35 TCGA-EB-A3XC-01 15 24922601 24922601 C T NPAP1 Silent p.F529F 0.56 TCGA-EB-A3XC-01 15 41021022 41021022 G A RAD51 Missense_Mutation p.R216K 0.63 tolerated(0.18) benign(0.119) TCGA-EB-A3XC-01 15 51397238 51397238 G A TNFAIP8L3 Missense_Mutation p.P46S 0.60 tolerated_low_confidence(0.05) benign(0.041) TCGA-EB-A3XC-01 15 52005530 52005530 G A SCG3 Missense_Mutation p.G403E 0.47 deleterious_low_confidence(0.02) benign(0.251) TCGA-EB-A3XC-01 15 67713728 67713728 G A IQCH Missense_Mutation p.G773E 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 15 79059015 79059015 G A ADAMTS7 Missense_Mutation p.P1080S 0.32 tolerated(0.27) benign(0.081) TCGA-EB-A3XC-01 15 83332714 83332714 C T AP3B2 Missense_Mutation p.E740K 0.34 tolerated(0.42) benign(0.292) TCGA-EB-A3XC-01 15 83395174 83395174 G A AC105339.2 3'Flank 0.48 TCGA-EB-A3XC-01 15 83451626 83451626 C T FSD2 Missense_Mutation p.G296E 0.31 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XC-01 15 89070876 89070876 G A DET1 Missense_Mutation p.P420S 0.32 tolerated(0.79) benign(0.156) TCGA-EB-A3XC-01 16 11862254 11862254 G A ZC3H7A Missense_Mutation p.P426L 0.18 tolerated(0.05) benign(0.03) TCGA-EB-A3XC-01 16 15788051 15788051 C T NDE1 Missense_Mutation p.L245F 0.17 deleterious(0.04) probably_damaging(0.991) TCGA-EB-A3XC-01 16 15815318 15815318 C T MYH11 Missense_Mutation p.M1520I 0.22 probably_damaging(0.989) TCGA-EB-A3XC-01 16 1712822 1712822 C T CRAMP1L Missense_Mutation p.P886S 0.27 deleterious(0.04) probably_damaging(1) TCGA-EB-A3XC-01 16 1712823 1712823 C T CRAMP1L Missense_Mutation p.P886L 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 16 2024798 2024798 C T TBL3 Silent p.I138I 0.49 TCGA-EB-A3XC-01 16 20976334 20976334 C T DNAH3 Missense_Mutation p.E2958K 0.48 deleterious(0.04) benign(0.175) TCGA-EB-A3XC-01 16 21031159 21031159 C T DNAH3 Missense_Mutation p.E1937K 0.48 tolerated(0.87) benign(0.097) TCGA-EB-A3XC-01 16 21145749 21145749 C T DNAH3 Missense_Mutation p.E305K 0.28 tolerated(0.08) probably_damaging(0.94) TCGA-EB-A3XC-01 16 21261053 21261053 G A ANKS4B Missense_Mutation p.G56R 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 16 21261702 21261702 G A ANKS4B Missense_Mutation p.G272E 0.49 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 16 3293609 3293609 C T MEFV Nonsense_Mutation p.W626* 0.19 TCGA-EB-A3XC-01 16 49407941 49407941 C G C16orf78 Missense_Mutation p.L31V 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A3XC-01 16 49412401 49412401 G A C16orf78 Silent p.R97R 0.38 TCGA-EB-A3XC-01 16 50666286 50666286 G A NKD1 Missense_Mutation p.G264R 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 16 50666287 50666287 G A NKD1 Missense_Mutation p.G264E 0.29 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XC-01 16 50666288 50666288 G A NKD1 Silent p.G264G 0.29 TCGA-EB-A3XC-01 16 58620639 58620639 G A CNOT1 Silent p.I149I 0.39 TCGA-EB-A3XC-01 16 67264265 67264265 C T FHOD1 Silent p.Q1001Q 0.29 TCGA-EB-A3XC-01 16 67688755 67688755 G A RLTPR Silent p.R1219R 0.41 TCGA-EB-A3XC-01 16 68863657 68863657 C T CDH1 Missense_Mutation p.P799L 0.26 tolerated(0.06) probably_damaging(0.992) TCGA-EB-A3XC-01 16 68863658 68863658 C T CDH1 Silent p.P799P 0.26 TCGA-EB-A3XC-01 16 70954602 70954602 C T HYDIN Silent p.K2559K 0.26 TCGA-EB-A3XC-01 16 70977722 70977722 C T HYDIN Missense_Mutation p.R2221Q 0.30 possibly_damaging(0.564) TCGA-EB-A3XC-01 16 72827432 72827432 G A ZFHX3 Missense_Mutation p.S3050F 0.28 unknown(0) TCGA-EB-A3XC-01 16 81197325 81197325 G A PKD1L2 RNA 0.21 TCGA-EB-A3XC-01 16 9943624 9943624 G A GRIN2A Silent p.F439F 0.24 TCGA-EB-A3XC-01 17 10309361 10309361 C A MYH8 Missense_Mutation p.R810M 0.23 deleterious(0) possibly_damaging(0.516) TCGA-EB-A3XC-01 17 10415480 10415480 G A MYH1 Silent p.L393L 0.23 TCGA-EB-A3XC-01 17 16664808 16664808 C T CCDC144A Missense_Mutation p.L1148F 0.50 deleterious(0.01) possibly_damaging(0.485) TCGA-EB-A3XC-01 17 171119 171119 G A RPH3AL Silent p.I55I 0.69 TCGA-EB-A3XC-01 17 18151073 18151073 C T FLII Silent p.L795L 0.51 TCGA-EB-A3XC-01 17 34236437 34236437 C T AC015849.16 RNA 0.22 TCGA-EB-A3XC-01 17 3664331 3664331 C T ITGAE Missense_Mutation p.E192K 0.63 deleterious(0.01) benign(0.421) TCGA-EB-A3XC-01 17 38249136 38249136 G A NR1D1 3'UTR 0.38 TCGA-EB-A3XC-01 17 38323782 38323782 C T CASC3 Missense_Mutation p.S523L 0.47 deleterious(0) probably_damaging(0.993) TCGA-EB-A3XC-01 17 40269572 40269572 G A KAT2A Missense_Mutation p.R491C 0.46 deleterious(0) probably_damaging(0.993) TCGA-EB-A3XC-01 17 40945727 40945727 G A WNK4 Missense_Mutation p.E759K 0.51 tolerated(0.15) unknown(0) TCGA-EB-A3XC-01 17 40948219 40948219 G A WNK4 Silent p.Q1170Q 0.53 TCGA-EB-A3XC-01 17 42287596 42287596 G A UBTF Missense_Mutation p.R508W 0.21 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XC-01 17 48606463 48606463 G A MYCBPAP Missense_Mutation p.D923N 0.15 tolerated(0.13) probably_damaging(0.928) TCGA-EB-A3XC-01 17 57126684 57126684 G A TRIM37 Missense_Mutation p.P462L 0.20 deleterious_low_confidence(0) benign(0.097) TCGA-EB-A3XC-01 17 58538065 58538065 A G APPBP2 Silent p.S340S 0.46 TCGA-EB-A3XC-01 17 60599564 60599564 G A TLK2 Splice_Site p.X52_splice 0.21 TCGA-EB-A3XC-01 17 62492804 62492804 A G POLG2 Missense_Mutation p.C95R 0.42 tolerated(0.26) benign(0.011) TCGA-EB-A3XC-01 17 67039854 67039854 G A ABCA9 Silent p.I192I 0.40 TCGA-EB-A3XC-01 17 71228295 71228295 G A FAM104A Missense_Mutation p.P51S 0.47 deleterious_low_confidence(0.05) benign(0.302) TCGA-EB-A3XC-01 17 7247215 7247215 C T ACAP1 Silent p.F203F 0.73 TCGA-EB-A3XC-01 17 72832403 72832403 C T TMEM104 Silent p.F356F 0.25 TCGA-EB-A3XC-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.87 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XC-01 17 76203111 76203111 C T AFMID 3'UTR 0.17 TCGA-EB-A3XC-01 17 77758177 77758177 C T CBX2 Missense_Mutation p.P312L 0.21 deleterious(0.02) benign(0.004) TCGA-EB-A3XC-01 18 20573388 20573388 C T RBBP8 Missense_Mutation p.S533F 0.39 deleterious(0.02) benign(0.024) TCGA-EB-A3XC-01 18 23713837 23713837 C T PSMA8 5'Flank 0.25 TCGA-EB-A3XC-01 18 2722538 2722538 C T SMCHD1 Missense_Mutation p.S827L 0.34 deleterious(0.05) benign(0.012) TCGA-EB-A3XC-01 18 3116410 3116410 G A MYOM1 Silent p.F1074F 0.29 TCGA-EB-A3XC-01 18 47563278 47563278 C T MYO5B Missense_Mutation p.G133R 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A3XC-01 18 50592457 50592457 T G DCC Missense_Mutation p.D394E 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3XC-01 18 61570643 61570643 C T SERPINB2 3'UTR 0.31 TCGA-EB-A3XC-01 18 61627430 61627430 G A HMSD Silent p.T87T 0.29 TCGA-EB-A3XC-01 18 77475293 77475293 C T CTDP1 Silent p.Y611Y 0.19 TCGA-EB-A3XC-01 19 11944513 11944513 C T ZNF440 3'UTR 0.45 TCGA-EB-A3XC-01 19 11944514 11944514 C T ZNF440 3'UTR 0.44 TCGA-EB-A3XC-01 19 12384781 12384781 G A ZNF44 Missense_Mutation p.P145S 0.24 tolerated(0.73) benign(0.138) TCGA-EB-A3XC-01 19 12501192 12501192 G A ZNF799 3'UTR 0.44 TCGA-EB-A3XC-01 19 13215788 13215788 G A TRMT1 Silent p.P647P 0.19 TCGA-EB-A3XC-01 19 13565975 13565975 G A CACNA1A Silent p.L115L 0.22 TCGA-EB-A3XC-01 19 17338656 17338656 C T OCEL1 Missense_Mutation p.P154S 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 19 17370455 17370455 G A USHBP1 Silent p.P285P 0.46 TCGA-EB-A3XC-01 19 18542187 18542187 C T SSBP4 Missense_Mutation p.P132S 0.60 tolerated(0.06) benign(0.077) TCGA-EB-A3XC-01 19 19166711 19166711 G A ARMC6 Missense_Mutation p.A423T 0.42 tolerated(0.66) benign(0.009) TCGA-EB-A3XC-01 19 22157506 22157506 A T ZNF208 Missense_Mutation p.N110K 0.07 tolerated(0.2) benign(0.053) TCGA-EB-A3XC-01 19 38024303 38024303 G T ZNF793 Missense_Mutation p.W79L 0.17 tolerated(0.66) benign(0.01) TCGA-EB-A3XC-01 19 43683080 43683080 C T PSG5 Intron 0.37 TCGA-EB-A3XC-01 19 44933552 44933552 C T ZNF229 Silent p.K468K 0.49 TCGA-EB-A3XC-01 19 46324674 46324674 G A SYMPK Missense_Mutation p.S954F 0.16 deleterious(0.01) possibly_damaging(0.639) TCGA-EB-A3XC-01 19 4683576 4683576 G A DPP9 Silent p.I748I 0.27 TCGA-EB-A3XC-01 19 48800332 48800332 C T CCDC114 Silent p.S638S 0.46 TCGA-EB-A3XC-01 19 50475141 50475141 G A VRK3 3'Flank 0.25 TCGA-EB-A3XC-01 19 50475351 50475351 C T VRK3 3'Flank 0.28 TCGA-EB-A3XC-01 19 51470438 51470438 G A KLK6 Missense_Mutation p.H62Y 0.41 deleterious(0) probably_damaging(0.944) TCGA-EB-A3XC-01 19 54515470 54515470 A T CACNG6 3'UTR 0.39 TCGA-EB-A3XC-01 19 54545436 54545436 C T VSTM1 Missense_Mutation p.E168K 0.23 tolerated(0.12) probably_damaging(0.916) TCGA-EB-A3XC-01 19 55333204 55333204 C T KIR3DL1 Silent p.F280F 0.17 TCGA-EB-A3XC-01 19 55401079 55401079 C T FCAR Silent p.L238L 0.43 TCGA-EB-A3XC-01 19 55525940 55525940 G A GP6 Missense_Mutation p.P458L 0.25 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EB-A3XC-01 19 55525941 55525941 G A GP6 Missense_Mutation p.P458S 0.24 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EB-A3XC-01 19 56156207 56156207 C T ZNF581 Silent p.P90P 0.47 TCGA-EB-A3XC-01 19 6535118 6535118 C T TNFSF9 3'UTR 0.23 TCGA-EB-A3XC-01 19 8993535 8993535 C T MUC16 Missense_Mutation p.D13852N 0.14 possibly_damaging(0.882) TCGA-EB-A3XC-01 19 9084665 9084665 C T MUC16 Missense_Mutation p.D2384N 0.26 unknown(0) TCGA-EB-A3XC-01 19 9087944 9087944 G A MUC16 Missense_Mutation p.H1291Y 0.42 unknown(0) TCGA-EB-A3XC-01 1 100361870 100361870 C T AGL Silent p.F1096F 0.34 TCGA-EB-A3XC-01 1 10708096 10708096 G A CASZ1 Missense_Mutation p.P1087S 0.43 tolerated(0.06) benign(0.013) TCGA-EB-A3XC-01 1 11008231 11008231 C T C1orf127 Missense_Mutation p.G654E 0.39 tolerated(0.1) possibly_damaging(0.461) TCGA-EB-A3XC-01 1 111060437 111060437 G A KCNA10 Nonsense_Mutation p.Q325* 0.34 TCGA-EB-A3XC-01 1 112319689 112319689 C T KCND3 Silent p.T575T 0.39 TCGA-EB-A3XC-01 1 12887272 12887272 C T PRAMEF11 Silent p.Q195Q 0.35 TCGA-EB-A3XC-01 1 144994909 144994909 G A PDE4DIP 5'UTR 0.14 TCGA-EB-A3XC-01 1 145528591 145528591 C T ITGA10 Missense_Mutation p.R130C 0.41 deleterious(0) possibly_damaging(0.582) TCGA-EB-A3XC-01 1 152283600 152283600 C T FLG Silent p.Q1254Q 0.19 TCGA-EB-A3XC-01 1 152285315 152285315 G A FLG Missense_Mutation p.R683C 0.35 probably_damaging(0.957) TCGA-EB-A3XC-01 1 153122497 153122497 C T SPRR2G Silent p.P30P 0.34 TCGA-EB-A3XC-01 1 153177437 153177437 C T LELP1 Missense_Mutation p.S85F 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-EB-A3XC-01 1 15382643 15382643 C T KAZN Silent p.A261A 0.30 TCGA-EB-A3XC-01 1 153906277 153906277 G A DENND4B Silent p.D1004D 0.25 TCGA-EB-A3XC-01 1 156518436 156518436 G A IQGAP3 Missense_Mutation p.P644S 0.29 tolerated(0.32) benign(0.005) TCGA-EB-A3XC-01 1 156914196 156914196 G A ARHGEF11 Silent p.I1007I 0.14 TCGA-EB-A3XC-01 1 157490846 157490846 C T FCRL5 Missense_Mutation p.G826R 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XC-01 1 160769859 160769859 C T LY9 Silent p.T147T 0.42 TCGA-EB-A3XC-01 1 16257917 16257917 C G SPEN Missense_Mutation p.P1728A 0.31 benign(0.009) TCGA-EB-A3XC-01 1 182836128 182836128 C T DHX9 Nonsense_Mutation p.R503* 0.39 TCGA-EB-A3XC-01 1 184692900 184692900 C G EDEM3 Missense_Mutation p.D280H 0.16 deleterious(0) probably_damaging(0.964) TCGA-EB-A3XC-01 1 203140228 203140228 G A MYBPH Silent p.L298L 0.32 TCGA-EB-A3XC-01 1 208202359 208202359 T C PLXNA2 Missense_Mutation p.I1752V 0.38 deleterious(0.04) benign(0.03) TCGA-EB-A3XC-01 1 20879540 20879540 C T FAM43B Missense_Mutation p.P25L 0.50 tolerated_low_confidence(0.13) benign(0.272) TCGA-EB-A3XC-01 1 209907936 209907936 A T HSD11B1 3'UTR 0.31 TCGA-EB-A3XC-01 1 209964001 209964001 C T IRF6 Missense_Mutation p.R300K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XC-01 1 20998548 20998548 G A KIF17 Missense_Mutation p.R869C 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 1 213147255 213147255 C T VASH2 Intron 0.29 TCGA-EB-A3XC-01 1 213147256 213147256 C T VASH2 Intron 0.29 TCGA-EB-A3XC-01 1 223567158 223567158 G A C1orf65 Missense_Mutation p.G114E 0.56 tolerated(0.56) benign(0.382) TCGA-EB-A3XC-01 1 240969462 240969462 C A RGS7 Missense_Mutation p.R416L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 1 240969463 240969463 G T RGS7 Silent p.R416R 0.31 TCGA-EB-A3XC-01 1 247614532 247614532 G A OR2B11 Silent p.I251I 0.35 TCGA-EB-A3XC-01 1 247695312 247695312 G A OR2C3 Missense_Mutation p.P168S 0.36 deleterious(0.03) possibly_damaging(0.686) TCGA-EB-A3XC-01 1 248058996 248058996 C T OR2W3 Silent p.L36L 0.36 TCGA-EB-A3XC-01 1 248684954 248684954 G A OR2G6 Missense_Mutation p.E3K 0.31 tolerated(0.92) benign(0.001) TCGA-EB-A3XC-01 1 248685265 248685265 G T OR2G6 Silent p.G106G 0.24 TCGA-EB-A3XC-01 1 24975353 24975353 C T SRRM1 Missense_Mutation p.P80S 0.30 probably_damaging(0.999) TCGA-EB-A3XC-01 1 24993358 24993358 C T SRRM1 Missense_Mutation p.P561S 0.40 unknown(0) TCGA-EB-A3XC-01 1 26900586 26900586 C T RPS6KA1 Missense_Mutation p.T710M 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A3XC-01 1 33741745 33741745 C T ZNF362 Missense_Mutation p.P28L 0.30 tolerated(0.38) probably_damaging(0.998) TCGA-EB-A3XC-01 1 33746014 33746014 C T ZNF362 Silent p.P213P 0.24 TCGA-EB-A3XC-01 1 40126934 40126934 C T NT5C1A Silent p.G186G 0.34 TCGA-EB-A3XC-01 1 40236031 40236031 C G OXCT2 Missense_Mutation p.R299S 0.34 deleterious(0) possibly_damaging(0.868) TCGA-EB-A3XC-01 1 40778281 40778281 C T COL9A2 Missense_Mutation p.G102S 0.21 deleterious(0) unknown(0) TCGA-EB-A3XC-01 1 43906967 43906967 G A SZT2 Missense_Mutation p.R2419Q 0.40 deleterious(0.05) probably_damaging(0.986) TCGA-EB-A3XC-01 1 44425994 44425994 T C IPO13 Missense_Mutation p.V701A 0.38 deleterious(0) possibly_damaging(0.611) TCGA-EB-A3XC-01 1 44435929 44435929 G A DPH2 Missense_Mutation p.D28N 0.31 tolerated(0.25) benign(0.059) TCGA-EB-A3XC-01 1 45470428 45470428 G A HECTD3 Silent p.F662F 0.33 TCGA-EB-A3XC-01 1 45470430 45470430 A C HECTD3 Missense_Mutation p.F662V 0.32 tolerated(0.16) benign(0.143) TCGA-EB-A3XC-01 1 47051592 47051592 G A MKNK1 Intron 0.13 TCGA-EB-A3XC-01 1 57395215 57395215 C T C8B Silent p.G546G 0.37 TCGA-EB-A3XC-01 1 61553830 61553830 C T NFIA Missense_Mutation p.H58Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 1 62340966 62340966 G A INADL Missense_Mutation p.G963R 0.38 tolerated(0.13) benign(0.032) TCGA-EB-A3XC-01 1 67147728 67147728 G A SGIP1 Missense_Mutation p.E331K 0.37 tolerated_low_confidence(0.15) benign(0.024) TCGA-EB-A3XC-01 1 74737337 74737337 T G FPGT-TNNI3K Missense_Mutation p.V244G 0.07 tolerated(0.07) benign(0.389) TCGA-EB-A3XC-01 1 75065376 75065376 C T C1orf173 Intron 0.13 TCGA-EB-A3XC-01 1 76397623 76397623 T C ASB17 Silent p.T118T 0.37 TCGA-EB-A3XC-01 1 809599 809599 G A FAM41C 5'Flank 0.40 TCGA-EB-A3XC-01 1 85397097 85397122 ATATATATAAAAAGGCTGATGAAGGA - MCOLN2 Frame_Shift_Del p.S489Dfs*14 0.45 TCGA-EB-A3XC-01 1 9101873 9101873 C T SLC2A5 Missense_Mutation p.G181D 0.32 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XC-01 1 91404584 91404584 G A ZNF644 Missense_Mutation p.S776L 0.47 tolerated(0.08) benign(0.205) TCGA-EB-A3XC-01 1 91841272 91841272 G A HFM1 Missense_Mutation p.L470F 0.53 deleterious(0.03) benign(0.33) TCGA-EB-A3XC-01 20 1961316 1961316 C T PDYN Missense_Mutation p.G140R 0.30 tolerated(0.45) benign(0.021) TCGA-EB-A3XC-01 20 20493760 20493760 A T RALGAPA2 Missense_Mutation p.F1418Y 0.29 deleterious(0) benign(0.001) TCGA-EB-A3XC-01 20 33338105 33338105 G A NCOA6 Silent p.S631S 0.36 TCGA-EB-A3XC-01 20 33764522 33764522 A T PROCR Missense_Mutation p.Y208F 0.28 tolerated(0.11) benign(0.349) TCGA-EB-A3XC-01 20 36992681 36992681 C T LBP Silent p.A235A 0.32 TCGA-EB-A3XC-01 20 40042165 40042165 G A CHD6 Intron 0.25 TCGA-EB-A3XC-01 20 40042166 40042166 G A CHD6 Intron 0.23 TCGA-EB-A3XC-01 20 428638 428638 T C TBC1D20 Missense_Mutation p.R51G 0.44 deleterious(0) probably_damaging(0.917) TCGA-EB-A3XC-01 20 45188656 45188656 G A SLC13A3 3'UTR 0.41 TCGA-EB-A3XC-01 20 47835882 47835882 G A DDX27 5'Flank 0.22 TCGA-EB-A3XC-01 20 47990757 47990757 G A KCNB1 Missense_Mutation p.S447F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 20 50290733 50290733 G A ATP9A Silent p.I332I 0.29 TCGA-EB-A3XC-01 20 58520058 58520058 G A FAM217B Missense_Mutation p.G354R 0.14 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XC-01 20 5948109 5948109 G A MCM8 Silent p.Q301Q 0.38 TCGA-EB-A3XC-01 20 896877 896877 G A ANGPT4 5'UTR 0.28 TCGA-EB-A3XC-01 20 9417680 9417680 C T PLCB4 Missense_Mutation p.S870F 0.40 deleterious(0.02) benign(0.144) TCGA-EB-A3XC-01 20 9520219 9520219 C T PAK7 Missense_Mutation p.E684K 0.30 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XC-01 21 15746126 15746126 G A HSPA13 Missense_Mutation p.R410C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 21 27423405 27423405 T G APP Missense_Mutation p.E191D 0.18 tolerated(0.49) unknown(0) TCGA-EB-A3XC-01 21 33346880 33346880 G A HUNK Missense_Mutation p.D342N 0.28 deleterious(0) possibly_damaging(0.834) TCGA-EB-A3XC-01 21 34901164 34901164 G A GART Missense_Mutation p.P268L 0.27 deleterious(0.03) benign(0.096) TCGA-EB-A3XC-01 21 41648069 41648069 C T DSCAM Missense_Mutation p.D771N 0.29 tolerated(0.16) benign(0.142) TCGA-EB-A3XC-01 21 41684183 41684183 G A DSCAM Silent p.T629T 0.33 TCGA-EB-A3XC-01 21 43327234 43327234 G A C2CD2 Silent p.I395I 0.27 TCGA-EB-A3XC-01 21 43855019 43855019 G A UBASH3A Missense_Mutation p.D450N 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 21 45076619 45076619 C T HSF2BP Splice_Site p.X13_splice 0.14 TCGA-EB-A3XC-01 22 16150995 16150995 C T AP000525.9 RNA 0.16 TCGA-EB-A3XC-01 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.20 deleterious(0.01) possibly_damaging(0.461) TCGA-EB-A3XC-01 22 19379700 19379700 T C HIRA Missense_Mutation p.N287S 0.31 deleterious(0.03) possibly_damaging(0.817) TCGA-EB-A3XC-01 22 39626118 39626118 C T PDGFB Missense_Mutation p.R191Q 0.41 deleterious(0.04) possibly_damaging(0.776) TCGA-EB-A3XC-01 22 46708195 46708195 C T GTSE1 Missense_Mutation p.P307L 0.42 deleterious(0.05) benign(0.399) TCGA-EB-A3XC-01 2 102626047 102626047 C T IL1R2 Missense_Mutation p.R31C 0.23 deleterious(0.04) possibly_damaging(0.824) TCGA-EB-A3XC-01 2 106498356 106498356 C G NCK2 Missense_Mutation p.P267A 0.19 tolerated(0.17) benign(0.02) TCGA-EB-A3XC-01 2 11053853 11053853 C T KCNF1 Missense_Mutation p.S434F 0.51 deleterious(0.03) possibly_damaging(0.564) TCGA-EB-A3XC-01 2 120362534 120362534 G A PCDP1 Missense_Mutation p.G332E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EB-A3XC-01 2 128339516 128339516 C T MYO7B Silent p.I377I 0.35 TCGA-EB-A3XC-01 2 128396952 128396952 C T LIMS2 Silent p.E334E 0.34 TCGA-EB-A3XC-01 2 128712902 128712902 C G SAP130 Missense_Mutation p.E720Q 0.19 tolerated_low_confidence(0.11) possibly_damaging(0.847) TCGA-EB-A3XC-01 2 132290506 132290506 C T CCDC74A Missense_Mutation p.P316S 0.27 tolerated(0.06) possibly_damaging(0.546) TCGA-EB-A3XC-01 2 132290507 132290507 C T CCDC74A Missense_Mutation p.P316L 0.27 tolerated(0.06) benign(0.416) TCGA-EB-A3XC-01 2 133618124 133618124 G A NCKAP5 Nonsense_Mutation p.R250* 0.44 TCGA-EB-A3XC-01 2 135745467 135745467 T C MAP3K19 Silent p.E325E 0.34 TCGA-EB-A3XC-01 2 152273381 152273381 G A RIF1 Missense_Mutation p.V157I 0.19 tolerated(0.13) benign(0.014) TCGA-EB-A3XC-01 2 152512945 152512945 C T NEB Missense_Mutation p.G2073R 0.50 probably_damaging(1) TCGA-EB-A3XC-01 2 155157982 155157982 C T GALNT13 Missense_Mutation p.R346W 0.28 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XC-01 2 160035656 160035656 C T TANC1 Missense_Mutation p.A831V 0.59 deleterious(0.02) benign(0.097) TCGA-EB-A3XC-01 2 161174704 161174704 C T RBMS1 Missense_Mutation p.D96N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XC-01 2 1652184 1652184 C T PXDN Missense_Mutation p.G1123E 0.10 deleterious(0) probably_damaging(0.991) TCGA-EB-A3XC-01 2 170416995 170416995 C A FASTKD1 Missense_Mutation p.K291N 0.10 deleterious(0.05) benign(0.218) TCGA-EB-A3XC-01 2 179431647 179431647 G A TTN Silent p.T26404T 0.25 TCGA-EB-A3XC-01 2 179584047 179584047 C T TTN Missense_Mutation p.E8024K 0.27 TCGA-EB-A3XC-01 2 179614209 179614209 C T TTN Intron 0.52 TCGA-EB-A3XC-01 2 179614989 179614989 G A TTN Intron 0.55 TCGA-EB-A3XC-01 2 180835714 180835714 C T CWC22 Silent p.K298K 0.28 TCGA-EB-A3XC-01 2 186670881 186670881 G A FSIP2 Silent p.R5705R 0.21 TCGA-EB-A3XC-01 2 189873662 189873662 C T COL3A1 Missense_Mutation p.H1180Y 0.51 unknown(0) TCGA-EB-A3XC-01 2 190541727 190541727 T C ANKAR Missense_Mutation p.F171L 0.26 tolerated(0.12) possibly_damaging(0.57) TCGA-EB-A3XC-01 2 196891484 196891484 C T DNAH7 Missense_Mutation p.V223I 0.57 tolerated(0.1) benign(0.098) TCGA-EB-A3XC-01 2 203817287 203817287 C T CARF Silent p.I104I 0.55 TCGA-EB-A3XC-01 2 220166953 220166953 C T PTPRN Silent p.G300G 0.46 TCGA-EB-A3XC-01 2 234106997 234106997 C T INPP5D Missense_Mutation p.L972F 0.44 tolerated_low_confidence(0.07) benign(0.419) TCGA-EB-A3XC-01 2 238285787 238285787 G A COL6A3 Silent p.L900L 0.51 TCGA-EB-A3XC-01 2 241534053 241534053 C T CAPN10 Silent p.F308F 0.63 TCGA-EB-A3XC-01 2 32696142 32696142 A G BIRC6 Missense_Mutation p.Y2181C 0.27 benign(0.001) TCGA-EB-A3XC-01 2 33747153 33747153 C G RASGRP3 Missense_Mutation p.S167C 0.40 deleterious(0) possibly_damaging(0.866) TCGA-EB-A3XC-01 2 40405532 40405532 T G SLC8A1 Missense_Mutation p.K637T 0.05 tolerated(0.45) benign(0.001) TCGA-EB-A3XC-01 2 40657211 40657211 A C SLC8A1 Silent p.S70S 0.06 TCGA-EB-A3XC-01 2 47233864 47233864 G T TTC7A Splice_Site p.X429_splice 0.15 TCGA-EB-A3XC-01 2 47739512 47739512 G A KCNK12 3'Flank 0.39 TCGA-EB-A3XC-01 2 48809020 48809020 C T STON1-GTF2A1L Silent p.S416S 0.15 TCGA-EB-A3XC-01 2 48818845 48818845 G A STON1-GTF2A1L Missense_Mutation p.E662K 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XC-01 2 61298806 61298806 C T KIAA1841 Silent p.S72S 0.30 TCGA-EB-A3XC-01 2 64147735 64147735 G A VPS54 Silent p.S632S 0.11 TCGA-EB-A3XC-01 2 64863838 64863838 C T SERTAD2 Silent p.E56E 0.34 TCGA-EB-A3XC-01 2 69046418 69046418 C T ARHGAP25 Silent p.L389L 0.17 TCGA-EB-A3XC-01 2 73718015 73718015 G A ALMS1 Missense_Mutation p.D2976N 0.17 possibly_damaging(0.897) TCGA-EB-A3XC-01 2 74699807 74699807 G A MRPL53 5'UTR 0.44 TCGA-EB-A3XC-01 2 74719448 74719448 C T TTC31 Missense_Mutation p.S346F 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 2 85051325 85051325 C T TRABD2A Silent p.G313G 0.39 TCGA-EB-A3XC-01 2 85628916 85628916 A C CAPG Missense_Mutation p.L63R 0.35 deleterious(0.02) possibly_damaging(0.853) TCGA-EB-A3XC-01 2 9570884 9570884 C T CPSF3 Silent p.F72F 0.35 TCGA-EB-A3XC-01 3 101384215 101384215 G A ZBTB11 Missense_Mutation p.H406Y 0.38 tolerated(0.55) benign(0.05) TCGA-EB-A3XC-01 3 105421299 105421299 G A CBLB Missense_Mutation p.S533F 0.40 tolerated(0.05) benign(0.001) TCGA-EB-A3XC-01 3 10975828 10975828 G A SLC6A11 Missense_Mutation p.M517I 0.39 tolerated(0.22) benign(0.001) TCGA-EB-A3XC-01 3 11064019 11064019 C A SLC6A1 Intron 0.08 TCGA-EB-A3XC-01 3 111604239 111604239 G A PHLDB2 Missense_Mutation p.E439K 0.33 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XC-01 3 122629125 122629125 G A SEMA5B Silent p.I1161I 0.32 TCGA-EB-A3XC-01 3 132320179 132320179 A T ACKR4 Missense_Mutation p.Y313F 0.25 deleterious(0) benign(0.26) TCGA-EB-A3XC-01 3 133467305 133467305 G A TF Silent p.S31S 0.19 TCGA-EB-A3XC-01 3 133467306 133467306 G A TF Missense_Mutation p.E32K 0.18 tolerated(0.49) benign(0.059) TCGA-EB-A3XC-01 3 133647726 133647726 C T C3orf36 5'UTR 0.43 TCGA-EB-A3XC-01 3 148603912 148603912 A T CPA3 Silent p.L338L 0.34 TCGA-EB-A3XC-01 3 14974654 14974654 G A FGD5 Missense_Mutation p.E1457K 0.35 tolerated(0.14) probably_damaging(0.955) TCGA-EB-A3XC-01 3 150931118 150931118 A C P2RY14 Missense_Mutation p.N329K 0.34 tolerated(0.12) benign(0.322) TCGA-EB-A3XC-01 3 15116407 15116407 C T ZFYVE20 Missense_Mutation p.E413K 0.35 tolerated(0.07) benign(0.423) TCGA-EB-A3XC-01 3 15116408 15116408 C T ZFYVE20 Silent p.E412E 0.35 TCGA-EB-A3XC-01 3 151475094 151475094 T G AADACL2 Missense_Mutation p.S306R 0.17 tolerated(0.42) benign(0.222) TCGA-EB-A3XC-01 3 151475425 151475425 T G AADACL2 3'UTR 0.17 TCGA-EB-A3XC-01 3 154862145 154862145 G A MME Intron 0.31 TCGA-EB-A3XC-01 3 167185042 167185042 G A SERPINI2 Silent p.F93F 0.38 TCGA-EB-A3XC-01 3 17052244 17052244 G A PLCL2 Missense_Mutation p.S343N 0.06 deleterious(0.01) probably_damaging(0.935) TCGA-EB-A3XC-01 3 170895116 170895116 G A TNIK Silent p.P231P 0.33 TCGA-EB-A3XC-01 3 27394305 27394305 G A NEK10 Silent p.I23I 0.27 TCGA-EB-A3XC-01 3 39227140 39227140 C T XIRP1 Missense_Mutation p.G1266E 0.39 tolerated(0.38) benign(0.018) TCGA-EB-A3XC-01 3 42751272 42751272 T C CCDC13 Missense_Mutation p.N631S 0.30 tolerated(0.82) benign(0.002) TCGA-EB-A3XC-01 3 43381791 43381791 G T SNRK Silent p.R248R 0.33 TCGA-EB-A3XC-01 3 46727067 46727067 G A ALS2CL Missense_Mutation p.P245L 0.40 tolerated(0.11) benign(0.028) TCGA-EB-A3XC-01 3 47451683 47451683 C T PTPN23 Missense_Mutation p.P799S 0.46 unknown(0) TCGA-EB-A3XC-01 3 52020287 52020287 A G ACY1 Missense_Mutation p.R126G 0.40 deleterious(0) probably_damaging(0.938) TCGA-EB-A3XC-01 3 52258209 52258209 G A TLR9 Silent p.G195G 0.33 TCGA-EB-A3XC-01 3 52473730 52473730 T C SEMA3G Missense_Mutation p.E478G 0.35 deleterious(0) probably_damaging(0.99) TCGA-EB-A3XC-01 3 58139325 58139325 G T FLNB Silent p.R2228R 0.22 TCGA-EB-A3XC-01 3 69096520 69096520 C T TMF1 Missense_Mutation p.D446N 0.37 tolerated(0.07) benign(0.008) TCGA-EB-A3XC-01 3 96962802 96962802 C A EPHA6 Missense_Mutation p.P426H 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 4 101342518 101342518 C A EMCN Silent p.V195V 0.21 TCGA-EB-A3XC-01 4 111539836 111539836 G A PITX2 Silent p.F140F 0.17 TCGA-EB-A3XC-01 4 114823829 114823829 G A ARSJ Silent p.V467V 0.46 TCGA-EB-A3XC-01 4 119229727 119229727 G A PRSS12 Missense_Mutation p.P499S 0.53 tolerated(0.09) benign(0.254) TCGA-EB-A3XC-01 4 154625972 154625972 A C TLR2 Missense_Mutation p.N638T 0.34 deleterious(0) benign(0) TCGA-EB-A3XC-01 4 158057725 158057725 G T GLRB Missense_Mutation p.M134I 0.45 deleterious(0.03) possibly_damaging(0.62) TCGA-EB-A3XC-01 4 169194513 169194513 G A DDX60 Missense_Mutation p.R831C 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3XC-01 4 170476941 170476941 G A NEK1 Missense_Mutation p.P498S 0.43 tolerated(0.11) benign(0.031) TCGA-EB-A3XC-01 4 183714483 183714483 G A TENM3 Missense_Mutation p.G2220S 0.26 tolerated(0.45) probably_damaging(0.934) TCGA-EB-A3XC-01 4 187201429 187201429 G A F11 Silent p.L306L 0.40 TCGA-EB-A3XC-01 4 2065650 2065650 C T NAT8L Silent p.F235F 0.36 TCGA-EB-A3XC-01 4 25665906 25665906 C T SLC34A2 Silent p.F111F 0.19 TCGA-EB-A3XC-01 4 39408669 39408669 G C KLB Missense_Mutation p.G34R 0.22 tolerated_low_confidence(0.85) benign(0.003) TCGA-EB-A3XC-01 4 39878705 39878705 T A PDS5A Silent p.L687L 0.42 TCGA-EB-A3XC-01 4 40356090 40356090 G A CHRNA9 Silent p.R331R 0.23 TCGA-EB-A3XC-01 4 5418622 5418622 G A STK32B Missense_Mutation p.E175K 0.47 tolerated(0.26) possibly_damaging(0.906) TCGA-EB-A3XC-01 4 54280841 54280841 T C FIP1L1 Missense_Mutation p.V292A 0.20 tolerated(0.57) benign(0.05) TCGA-EB-A3XC-01 4 5862774 5862774 C A CRMP1 Missense_Mutation p.V212L 0.24 deleterious(0.01) benign(0.122) TCGA-EB-A3XC-01 4 69795810 69795810 A C UGT2A3 Silent p.S435S 0.21 TCGA-EB-A3XC-01 4 70160506 70160506 G A UGT2B28 Silent p.G523G 0.20 TCGA-EB-A3XC-01 4 70360875 70360875 G A UGT2B4 Silent p.F235F 0.39 TCGA-EB-A3XC-01 4 70361251 70361251 G A UGT2B4 Missense_Mutation p.S110L 0.42 tolerated(0.71) benign(0.019) TCGA-EB-A3XC-01 4 81952525 81952525 C T BMP3 Silent p.F29F 0.20 TCGA-EB-A3XC-01 4 87770101 87770101 C T SLC10A6 Silent p.R56R 0.26 TCGA-EB-A3XC-01 5 121187968 121187968 G A FTMT Missense_Mutation p.D104N 0.55 deleterious(0.04) benign(0.14) TCGA-EB-A3XC-01 5 131296312 131296312 G A ACSL6 Silent p.A620A 0.56 TCGA-EB-A3XC-01 5 132096652 132096652 G A SEPT8 Silent p.V376V 0.67 TCGA-EB-A3XC-01 5 140236944 140236944 G A PCDHA10 Silent p.T437T 0.05 TCGA-EB-A3XC-01 5 140516168 140516168 C T PCDHB5 Silent p.I384I 0.27 TCGA-EB-A3XC-01 5 140516169 140516169 C T PCDHB5 Nonsense_Mutation p.Q385* 0.27 TCGA-EB-A3XC-01 5 140604923 140604923 G A PCDHB14 Missense_Mutation p.G616S 0.43 tolerated_low_confidence(1) benign(0.028) TCGA-EB-A3XC-01 5 140953239 140953239 G A DIAPH1 Silent p.I726I 0.69 TCGA-EB-A3XC-01 5 147488344 147488344 G A SPINK5 Missense_Mutation p.D546N 0.59 tolerated(1) benign(0) TCGA-EB-A3XC-01 5 156635941 156635941 C T ITK Silent p.I60I 0.59 TCGA-EB-A3XC-01 5 31451712 31451712 G A DROSHA Silent p.I870I 0.53 TCGA-EB-A3XC-01 5 35876392 35876392 A C IL7R Missense_Mutation p.K395T 0.10 tolerated(0.46) benign(0.014) TCGA-EB-A3XC-01 5 38370559 38370559 C T EGFLAM Missense_Mutation p.T236I 0.64 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-EB-A3XC-01 5 45262400 45262400 C T HCN1 Missense_Mutation p.E766K 0.68 tolerated_low_confidence(0.5) benign(0.052) TCGA-EB-A3XC-01 5 57751598 57751598 C T PLK2 Missense_Mutation p.D465N 0.60 tolerated(0.14) benign(0.006) TCGA-EB-A3XC-01 5 6337269 6337269 G A CTD-2324F15.2 RNA 0.59 TCGA-EB-A3XC-01 5 90281230 90281230 C T GPR98 Missense_Mutation p.L6015F 0.23 probably_damaging(0.961) TCGA-EB-A3XC-01 6 109285499 109285499 G A ARMC2 Missense_Mutation p.G757R 0.44 tolerated(0.05) probably_damaging(0.945) TCGA-EB-A3XC-01 6 109764994 109764994 G A SMPD2 Silent p.Q386Q 0.39 TCGA-EB-A3XC-01 6 109764995 109764995 G A SMPD2 Missense_Mutation p.A387T 0.40 tolerated(0.22) benign(0.039) TCGA-EB-A3XC-01 6 117113323 117113323 T G GPRC6A Missense_Mutation p.K921N 0.20 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-EB-A3XC-01 6 119628120 119628126 GCATAAC - MAN1A1 Frame_Shift_Del p.G212Afs*4 0.42 TCGA-EB-A3XC-01 6 12296422 12296422 G A EDN1 3'UTR 0.32 TCGA-EB-A3XC-01 6 131222231 131222231 G C EPB41L2 Missense_Mutation p.T340S 0.17 deleterious(0.01) benign(0.362) TCGA-EB-A3XC-01 6 132029930 132029930 G T CTAGE9 Missense_Mutation p.P743Q 0.22 deleterious(0.01) possibly_damaging(0.817) TCGA-EB-A3XC-01 6 133015206 133015206 G A VNN1 Missense_Mutation p.P153S 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A3XC-01 6 136472298 136472298 G A PDE7B Missense_Mutation p.G128E 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 6 142691824 142691824 C T GPR126 Silent p.I321I 0.17 TCGA-EB-A3XC-01 6 143755089 143755089 G A ADAT2 Silent p.I77I 0.22 TCGA-EB-A3XC-01 6 149983316 149983316 G A LATS1 Missense_Mutation p.A981V 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A3XC-01 6 150147262 150147262 G A LRP11 Intron 0.27 TCGA-EB-A3XC-01 6 150266617 150266617 C T ULBP2 Silent p.A86A 0.30 TCGA-EB-A3XC-01 6 151894524 151894524 C T CCDC170 Silent p.I330I 0.32 TCGA-EB-A3XC-01 6 152485313 152485313 C T SYNE1 Silent p.K7925K 0.17 TCGA-EB-A3XC-01 6 158483117 158483117 G A SYNJ2 Missense_Mutation p.E350K 0.22 tolerated(0.27) benign(0.25) TCGA-EB-A3XC-01 6 27879506 27879506 C T OR2B2 Missense_Mutation p.E198K 0.08 tolerated(0.14) probably_damaging(0.996) TCGA-EB-A3XC-01 6 30128423 30128423 G A TRIM10 Silent p.P71P 0.37 TCGA-EB-A3XC-01 6 30558470 30558470 C T ABCF1 Nonsense_Mutation p.R844* 0.40 TCGA-EB-A3XC-01 6 30673545 30673545 G A MDC1 Missense_Mutation p.P1139S 0.40 tolerated(0.2) possibly_damaging(0.585) TCGA-EB-A3XC-01 6 31107451 31107451 G A PSORS1C1 Silent p.K67K 0.30 TCGA-EB-A3XC-01 6 31598499 31598499 T C PRRC2A Missense_Mutation p.F796L 0.29 benign(0.153) TCGA-EB-A3XC-01 6 31691548 31691548 G A C6orf25 Nonsense_Mutation p.W65* 0.36 TCGA-EB-A3XC-01 6 31727646 31727646 T C MSH5 Missense_Mutation p.S527P 0.49 deleterious(0.01) benign(0.394) TCGA-EB-A3XC-01 6 31868369 31868369 G A ZBTB12 Silent p.S238S 0.38 TCGA-EB-A3XC-01 6 31927896 31927896 G A SKIV2L Missense_Mutation p.R79Q 0.37 tolerated(0.51) benign(0.004) TCGA-EB-A3XC-01 6 34826576 34826576 G A UHRF1BP1 Missense_Mutation p.D815N 0.17 deleterious(0.01) benign(0.014) TCGA-EB-A3XC-01 6 36982427 36982427 C G FGD2 Missense_Mutation p.L277V 0.34 deleterious(0) probably_damaging(0.979) TCGA-EB-A3XC-01 6 43107167 43107167 C T PTK7 Missense_Mutation p.P516S 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 6 43624373 43624373 G A RSPH9 Missense_Mutation p.E180K 0.39 tolerated(0.55) benign(0.047) TCGA-EB-A3XC-01 6 43749740 43749740 A G VEGFA Missense_Mutation p.D378G 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 6 46107841 46107841 C T ENPP4 Missense_Mutation p.S174L 0.43 deleterious(0.02) benign(0.157) TCGA-EB-A3XC-01 6 57512867 57512867 A G PRIM2 3'UTR 0.17 TCGA-EB-A3XC-01 6 70917047 70917047 A G COL19A1 3'UTR 0.33 TCGA-EB-A3XC-01 6 84798870 84798870 A T MRAP2 Missense_Mutation p.R96S 0.25 tolerated(0.51) benign(0.098) TCGA-EB-A3XC-01 6 88853500 88853500 G A CNR1 3'UTR 0.23 TCGA-EB-A3XC-01 6 89967361 89967361 C T GABRR2 3'UTR 0.15 TCGA-EB-A3XC-01 6 90572428 90572428 C T CASP8AP2 RNA 0.49 TCGA-EB-A3XC-01 7 100345173 100345173 G A ZAN Missense_Mutation p.G311E 0.07 probably_damaging(1) TCGA-EB-A3XC-01 7 100683613 100683613 T G MUC17 Silent p.A2972A 0.11 TCGA-EB-A3XC-01 7 102453771 102453771 C T FBXL13 3'UTR 0.34 TCGA-EB-A3XC-01 7 103113312 103113312 C T RELN Missense_Mutation p.G3444R 0.26 deleterious_low_confidence(0.05) probably_damaging(0.942) TCGA-EB-A3XC-01 7 103198474 103198474 G A RELN Missense_Mutation p.S1851L 0.42 deleterious(0) benign(0.144) TCGA-EB-A3XC-01 7 11450904 11450904 C T THSD7A Missense_Mutation p.G1243E 0.17 deleterious(0) probably_damaging(0.992) TCGA-EB-A3XC-01 7 122130144 122130144 C A CADPS2 Missense_Mutation p.A615S 0.11 tolerated(0.62) benign(0.001) TCGA-EB-A3XC-01 7 126173655 126173655 C T GRM8 Missense_Mutation p.G594E 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 7 128486474 128486474 G A FLNC Missense_Mutation p.G1362S 0.03 tolerated(0.58) benign(0.026) TCGA-EB-A3XC-01 7 128486475 128486475 G A FLNC Missense_Mutation p.G1362D 0.03 tolerated(0.24) benign(0.347) TCGA-EB-A3XC-01 7 130038601 130038601 G A CEP41 3'UTR 0.43 TCGA-EB-A3XC-01 7 139299046 139299046 G A HIPK2 Missense_Mutation p.P659L 0.27 deleterious(0) probably_damaging(0.963) TCGA-EB-A3XC-01 7 140453136 140453136 A C BRAF Missense_Mutation p.V600G 0.37 deleterious(0) possibly_damaging(0.497) TCGA-EB-A3XC-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.36 deleterious(0) possibly_damaging(0.838) TCGA-EB-A3XC-01 7 140710239 140710239 G A MRPS33 Silent p.L65L 0.45 TCGA-EB-A3XC-01 7 142482330 142482330 A C PRSS3P2 RNA 0.05 TCGA-EB-A3XC-01 7 143771437 143771437 G A OR2A25 Missense_Mutation p.G42E 0.41 deleterious(0.02) possibly_damaging(0.901) TCGA-EB-A3XC-01 7 143772108 143772108 C T OR2A25 Missense_Mutation p.P266S 0.41 tolerated(0.71) benign(0.034) TCGA-EB-A3XC-01 7 143792290 143792290 C T OR2A12 Silent p.F30F 0.37 TCGA-EB-A3XC-01 7 148963502 148963502 C T ZNF783 Missense_Mutation p.S34L 0.48 deleterious(0) possibly_damaging(0.631) TCGA-EB-A3XC-01 7 150327203 150327203 G A GIMAP6 Missense_Mutation p.P10S 0.06 tolerated(0.41) unknown(0) TCGA-EB-A3XC-01 7 150389947 150389947 G A GIMAP2 Silent p.Q191Q 0.46 TCGA-EB-A3XC-01 7 150417464 150417464 C T GIMAP1 Silent p.F124F 0.42 TCGA-EB-A3XC-01 7 150440012 150440012 A T GIMAP5 Missense_Mutation p.E262V 0.11 deleterious(0.04) benign(0.318) TCGA-EB-A3XC-01 7 151927076 151927076 C T KMT2C Missense_Mutation p.A970T 0.05 benign(0.395) TCGA-EB-A3XC-01 7 154862691 154862691 G A HTR5A Missense_Mutation p.D28N 0.42 tolerated(0.57) benign(0.001) TCGA-EB-A3XC-01 7 156437412 156437412 G A RNF32 Missense_Mutation p.E79K 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3XC-01 7 18706074 18706074 G A HDAC9 Missense_Mutation p.G569E 0.49 tolerated(1) benign(0.126) TCGA-EB-A3XC-01 7 20199046 20199046 C T MACC1 Missense_Mutation p.S313N 0.38 deleterious(0.02) benign(0.059) TCGA-EB-A3XC-01 7 23731181 23731181 G A FAM221A Silent p.A201A 0.11 TCGA-EB-A3XC-01 7 31142850 31142850 G A ADCYAP1R1 Splice_Site p.X377_splice 0.08 TCGA-EB-A3XC-01 7 31142851 31142851 G A ADCYAP1R1 Silent p.L377L 0.08 TCGA-EB-A3XC-01 7 33035909 33035909 C T FKBP9 Missense_Mutation p.L392F 0.39 deleterious(0) probably_damaging(0.978) TCGA-EB-A3XC-01 7 38424495 38424495 G A AMPH Missense_Mutation p.S671L 0.47 deleterious(0) possibly_damaging(0.7) TCGA-EB-A3XC-01 7 4281537 4281537 C A SDK1 Missense_Mutation p.N2081K 0.44 deleterious(0) possibly_damaging(0.669) TCGA-EB-A3XC-01 7 44555533 44555533 G A NPC1L1 Missense_Mutation p.P1249L 0.46 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A3XC-01 7 44573360 44573360 A T NPC1L1 Silent p.S753S 0.18 TCGA-EB-A3XC-01 7 4917684 4917684 G A RADIL Silent p.S29S 0.33 TCGA-EB-A3XC-01 7 4917685 4917685 G A RADIL Missense_Mutation p.S29F 0.33 tolerated(0.63) possibly_damaging(0.677) TCGA-EB-A3XC-01 7 5982965 5982965 C T RSPH10B Nonsense_Mutation p.W583* 0.25 TCGA-EB-A3XC-01 7 8126030 8126030 C T GLCCI1 Silent p.S502S 0.44 TCGA-EB-A3XC-01 7 81596952 81596952 G A CACNA2D1 Missense_Mutation p.S808F 0.33 tolerated(0.23) benign(0.002) TCGA-EB-A3XC-01 7 82585287 82585287 C T PCLO Missense_Mutation p.G1661E 0.38 unknown(0) TCGA-EB-A3XC-01 7 83036530 83036530 C T SEMA3E Missense_Mutation p.M232I 0.33 tolerated(0.4) benign(0.043) TCGA-EB-A3XC-01 7 98501098 98501098 C T TRRAP Silent p.L332L 0.53 TCGA-EB-A3XC-01 7 98942012 98942012 C T ARPC1A Missense_Mutation p.T89I 0.47 deleterious(0.02) benign(0.017) TCGA-EB-A3XC-01 8 10388868 10388868 G A PRSS55 Silent p.K137K 0.24 TCGA-EB-A3XC-01 8 12291589 12291589 G A FAM86B2 Missense_Mutation p.S44F 0.15 deleterious(0) probably_damaging(0.949) TCGA-EB-A3XC-01 8 124664832 124664832 G A KLHL38 Missense_Mutation p.S112F 0.20 deleterious(0) possibly_damaging(0.897) TCGA-EB-A3XC-01 8 124810398 124810398 C T FAM91A1 Silent p.L494L 0.47 TCGA-EB-A3XC-01 8 132002745 132002745 C T ADCY8 Missense_Mutation p.G335E 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XC-01 8 139189622 139189622 T G FAM135B Missense_Mutation p.Q357H 0.15 tolerated(0.13) benign(0.03) TCGA-EB-A3XC-01 8 143956685 143956685 C T CYP11B1 Missense_Mutation p.D389N 0.22 deleterious(0.02) possibly_damaging(0.718) TCGA-EB-A3XC-01 8 144671898 144671898 G A EEF1D Silent p.F118F 0.43 TCGA-EB-A3XC-01 8 1882108 1882108 G A ARHGEF10 Silent p.E1074E 0.32 TCGA-EB-A3XC-01 8 1882109 1882109 G A ARHGEF10 Splice_Site p.X1074_splice 0.31 TCGA-EB-A3XC-01 8 27457420 27457420 G A CLU Silent p.S347S 0.18 TCGA-EB-A3XC-01 8 39602391 39602391 T C ADAM2 Silent p.E732E 0.23 TCGA-EB-A3XC-01 8 40532236 40532236 C A ZMAT4 Missense_Mutation p.M188I 0.34 tolerated(0.18) benign(0.02) TCGA-EB-A3XC-01 8 6782399 6782399 C T DEFA6 Missense_Mutation p.E82K 0.33 deleterious(0.01) possibly_damaging(0.883) TCGA-EB-A3XC-01 8 70981484 70981484 G A PRDM14 Silent p.F204F 0.26 TCGA-EB-A3XC-01 8 77616979 77616979 G A ZFHX4 Missense_Mutation p.G219E 0.12 probably_damaging(0.969) TCGA-EB-A3XC-01 8 8239147 8239147 C T SGK223 Silent p.R37R 0.12 TCGA-EB-A3XC-01 8 86253854 86253854 G T CA1 Missense_Mutation p.P4Q 0.20 tolerated(0.3) benign(0.007) TCGA-EB-A3XC-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.18 deleterious(0.02) possibly_damaging(0.887) TCGA-EB-A3XC-01 9 104432456 104432456 C T GRIN3A Missense_Mutation p.M746I 0.76 tolerated(0.07) probably_damaging(0.996) TCGA-EB-A3XC-01 9 119488215 119488215 G C ASTN2 Missense_Mutation p.L830V 0.21 tolerated(0.08) unknown(0) TCGA-EB-A3XC-01 9 127912095 127912095 G A PPP6C Missense_Mutation p.P296S 0.73 deleterious(0) probably_damaging(1) TCGA-EB-A3XC-01 9 131847525 131847525 C T DOLPP1 Missense_Mutation p.S101F 0.18 deleterious(0) probably_damaging(0.972) TCGA-EB-A3XC-01 9 136029624 136029624 G A GBGT1 Silent p.F128F 0.71 TCGA-EB-A3XC-01 9 138646971 138646971 C T KCNT1 Missense_Mutation p.P166S 0.64 tolerated(0.49) benign(0.006) TCGA-EB-A3XC-01 9 35706305 35706305 G A TLN1 Missense_Mutation p.S1750F 0.79 deleterious(0) probably_damaging(0.941) TCGA-EB-A3XC-01 9 6533032 6533032 C T GLDC Silent p.K1016K 0.39 TCGA-EB-A3XC-01 9 79318448 79318448 G C PRUNE2 Missense_Mutation p.P2694R 0.05 tolerated(0.12) benign(0.074) TCGA-EB-A3XC-01 9 96214705 96214705 G C FAM120AOS Missense_Mutation p.P96R 0.62 deleterious_low_confidence(0) unknown(0) TCGA-EB-A3XC-01 X 101139222 101139222 G A ZMAT1 Nonsense_Mutation p.Q393* 0.34 TCGA-EB-A3XC-01 X 106462146 106462146 G A PIH1D3 Silent p.E93E 0.68 TCGA-EB-A3XC-01 X 115576111 115576111 G A SLC6A14 Missense_Mutation p.G228R 0.65 deleterious(0) probably_damaging(0.93) TCGA-EB-A3XC-01 X 153626626 153626626 G A RPL10 5'UTR 0.91 TCGA-EB-A3XC-01 X 17818712 17818712 G A RAI2 Silent p.S473S 0.75 TCGA-EB-A3XC-01 X 30254660 30254660 C T MAGEB3 Missense_Mutation p.L207F 0.69 deleterious(0) benign(0.41) TCGA-EB-A3XC-01 X 47774325 47774325 G A ZNF81 Missense_Mutation p.G94R 0.63 tolerated(0.16) benign(0.216) TCGA-EB-A3XC-01 X 53607976 53607976 G A HUWE1 Missense_Mutation p.S1844L 0.63 possibly_damaging(0.526) TCGA-EB-A3XC-01 X 72223364 72223364 G A PABPC1L2B 5'UTR 0.47 TCGA-EB-A3XC-01 X 72299343 72299343 C T PABPC1L2A 5'UTR 0.44 TCGA-EB-A3XC-01 X 86873069 86873069 C T KLHL4 Nonsense_Mutation p.R288* 0.74 TCGA-EB-A3XD-01 10 104156785 104156785 C T NFKB2 Missense_Mutation p.S123F 0.17 tolerated(0.09) possibly_damaging(0.647) TCGA-EB-A3XD-01 10 126716130 126716130 C T CTBP2 Missense_Mutation p.E67K 0.08 tolerated_low_confidence(0.07) probably_damaging(0.982) TCGA-EB-A3XD-01 10 24762237 24762237 G A KIAA1217 Silent p.A309A 0.11 TCGA-EB-A3XD-01 10 26880320 26880320 A G LINC00264 RNA 0.06 TCGA-EB-A3XD-01 10 49446159 49446159 G A FRMPD2 Missense_Mutation p.P266S 0.13 tolerated(0.25) benign(0.002) TCGA-EB-A3XD-01 10 81702188 81702188 C T SFTPD Missense_Mutation p.G130E 0.15 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XD-01 10 96824665 96824665 G A CYP2C8 Silent p.I178I 0.08 TCGA-EB-A3XD-01 10 98816131 98816131 C T SLIT1 Silent p.K416K 0.07 TCGA-EB-A3XD-01 11 102564653 102564653 C T MMP27 Missense_Mutation p.G393S 0.06 tolerated(0.1) possibly_damaging(0.825) TCGA-EB-A3XD-01 11 106558296 106558296 G A GUCY1A2 Silent p.F757F 0.10 TCGA-EB-A3XD-01 11 118365449 118365449 C T KMT2A Missense_Mutation p.S1777F 0.10 possibly_damaging(0.877) TCGA-EB-A3XD-01 11 119217021 119217021 G A MFRP Missense_Mutation p.P40S 0.14 tolerated(0.59) benign(0.013) TCGA-EB-A3XD-01 11 130343185 130343185 C T ADAMTS15 Silent p.P774P 0.09 TCGA-EB-A3XD-01 11 15134070 15134070 G A INSC Missense_Mutation p.G19S 0.11 tolerated_low_confidence(0.22) benign(0.004) TCGA-EB-A3XD-01 11 18303562 18303562 G A HPS5 Silent p.A1088A 0.05 TCGA-EB-A3XD-01 11 4567036 4567036 G C OR52M1 Missense_Mutation p.G206R 0.04 deleterious(0.04) probably_damaging(1) TCGA-EB-A3XD-01 11 47861323 47861323 G A NUP160 Intron 0.07 TCGA-EB-A3XD-01 11 55872957 55872957 G A OR8H2 Missense_Mutation p.G147R 0.06 deleterious(0.02) benign(0.151) TCGA-EB-A3XD-01 11 5624860 5624860 C T TRIM6-TRIM34 Silent p.L134L 0.04 TCGA-EB-A3XD-01 11 5809989 5809989 G A OR52N1 Missense_Mutation p.P20S 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-EB-A3XD-01 11 58275399 58275399 G A OR5B21 Silent p.F60F 0.07 TCGA-EB-A3XD-01 11 6048614 6048614 C T OR56A1 Silent p.Q107Q 0.05 TCGA-EB-A3XD-01 11 64677347 64677347 G A ATG2A Missense_Mutation p.A638V 0.11 deleterious(0.03) possibly_damaging(0.455) TCGA-EB-A3XD-01 11 65422357 65422357 G A RELA Missense_Mutation p.P383L 0.18 tolerated(0.46) benign(0) TCGA-EB-A3XD-01 11 78380232 78380232 C T TENM4 Silent p.G2386G 0.07 TCGA-EB-A3XD-01 11 7981382 7981382 C T NLRP10 Missense_Mutation p.E593K 0.08 tolerated(0.42) benign(0.006) TCGA-EB-A3XD-01 11 82549517 82549517 G A PRCP Nonsense_Mutation p.Q417* 0.12 TCGA-EB-A3XD-01 11 89868008 89868008 G A NAALAD2 Missense_Mutation p.G28S 0.05 deleterious(0.01) possibly_damaging(0.611) TCGA-EB-A3XD-01 11 89868009 89868009 G A NAALAD2 Splice_Site p.X28_splice 0.05 TCGA-EB-A3XD-01 11 94113447 94113447 G A GPR83 Silent p.S380S 0.09 TCGA-EB-A3XD-01 12 100774588 100774588 G T SLC17A8 Missense_Mutation p.G71C 0.07 tolerated(0.19) probably_damaging(1) TCGA-EB-A3XD-01 12 105582194 105582194 C T APPL2 Silent p.R503R 0.09 TCGA-EB-A3XD-01 12 110782771 110782771 C T ATP2A2 Nonsense_Mutation p.Q868* 0.10 TCGA-EB-A3XD-01 12 112600868 112600868 G A HECTD4 Silent p.I4220I 0.11 TCGA-EB-A3XD-01 12 112691908 112691908 T C HECTD4 Missense_Mutation p.N983S 0.10 benign(0.109) TCGA-EB-A3XD-01 12 113400697 113400697 C T OAS3 Nonsense_Mutation p.R692* 0.10 TCGA-EB-A3XD-01 12 113496033 113496033 G A DTX1 Silent p.V12V 0.07 TCGA-EB-A3XD-01 12 11546725 11546725 C T PRB2 Missense_Mutation p.G96E 0.03 tolerated(0.6) unknown(0) TCGA-EB-A3XD-01 12 120966895 120966895 C T COQ5 Nonsense_Mutation p.W17* 0.13 TCGA-EB-A3XD-01 12 122079568 122079568 C T ORAI1 3'UTR 0.10 TCGA-EB-A3XD-01 12 123679136 123679136 C T MPHOSPH9 Missense_Mutation p.E528K 0.07 deleterious(0) probably_damaging(0.949) TCGA-EB-A3XD-01 12 129558343 129558343 C T TMEM132D 3'UTR 0.14 TCGA-EB-A3XD-01 12 23818466 23818466 G A SOX5 Silent p.P281P 0.08 TCGA-EB-A3XD-01 12 25149226 25149226 C T C12orf77 Silent p.K17K 0.07 TCGA-EB-A3XD-01 12 26775249 26775249 G A ITPR2 Missense_Mutation p.P1071L 0.07 deleterious(0.02) benign(0.179) TCGA-EB-A3XD-01 12 4736120 4736120 G A AKAP3 Missense_Mutation p.L650F 0.09 tolerated(0.67) benign(0.004) TCGA-EB-A3XD-01 12 52841142 52841142 C T KRT6B Silent p.L509L 0.08 TCGA-EB-A3XD-01 12 53009975 53009975 C T KRT73 Missense_Mutation p.E213K 0.11 deleterious(0) benign(0.105) TCGA-EB-A3XD-01 12 55615043 55615043 C T OR10A7 Missense_Mutation p.P79S 0.07 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XD-01 12 57345813 57345813 T C RDH16 Nonstop_Mutation p.*318Wext*2 0.12 TCGA-EB-A3XD-01 12 57566960 57566960 C T LRP1 Missense_Mutation p.P1058L 0.05 possibly_damaging(0.837) TCGA-EB-A3XD-01 12 7802272 7802272 C T APOBEC1 Silent p.K194K 0.08 TCGA-EB-A3XD-01 12 93244985 93244985 G A EEA1 Nonsense_Mutation p.Q234* 0.10 TCGA-EB-A3XD-01 12 98848848 98848848 G A SLC9A7P1 RNA 0.10 TCGA-EB-A3XD-01 13 36229846 36229846 G A NBEA Nonsense_Mutation p.W2753* 0.11 TCGA-EB-A3XD-01 13 37014168 37014168 G A CCNA1 Missense_Mutation p.D316N 0.11 deleterious(0.02) probably_damaging(1) TCGA-EB-A3XD-01 13 48619797 48619797 T C NUDT15 Silent p.S119S 0.10 TCGA-EB-A3XD-01 14 106066414 106066414 G A IGHE Missense_Mutation p.P426S 0.10 tolerated(0.5) benign(0.024) TCGA-EB-A3XD-01 14 21878027 21878027 G A CHD8 Missense_Mutation p.P783S 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3XD-01 14 23532226 23532226 G A ACIN1 Missense_Mutation p.S990F 0.04 probably_damaging(0.987) TCGA-EB-A3XD-01 14 26949194 26949194 G A NOVA1 Missense_Mutation p.R146C 0.06 deleterious(0) unknown(0) TCGA-EB-A3XD-01 14 51390787 51390787 C T PYGL Missense_Mutation p.G187E 0.06 deleterious(0.02) probably_damaging(1) TCGA-EB-A3XD-01 14 68191190 68191190 G A RDH12 Silent p.R23R 0.05 TCGA-EB-A3XD-01 14 69378955 69378955 G A ACTN1 Silent p.I115I 0.04 TCGA-EB-A3XD-01 14 77844855 77844855 G A SAMD15 Missense_Mutation p.R365K 0.08 tolerated(0.37) benign(0.029) TCGA-EB-A3XD-01 14 79423632 79423632 G A NRXN3 Missense_Mutation p.E402K 0.06 tolerated(0.07) probably_damaging(0.964) TCGA-EB-A3XD-01 15 25436389 25436389 G A SNORD115-11 3'Flank 0.07 TCGA-EB-A3XD-01 15 48063588 48063588 A G SEMA6D Missense_Mutation p.K943R 0.05 tolerated(0.39) possibly_damaging(0.812) TCGA-EB-A3XD-01 15 50526115 50526115 G A SLC27A2 Missense_Mutation p.E536K 0.10 tolerated(0.44) benign(0.006) TCGA-EB-A3XD-01 15 52439677 52439677 G A GNB5 Missense_Mutation p.S158L 0.11 deleterious(0.01) benign(0.378) TCGA-EB-A3XD-01 15 54586181 54586181 A C UNC13C Missense_Mutation p.K1303Q 0.06 deleterious_low_confidence(0) benign(0.259) TCGA-EB-A3XD-01 15 67786656 67786656 C T IQCH Silent p.I974I 0.14 TCGA-EB-A3XD-01 15 73590734 73590734 C T NEO1 Missense_Mutation p.S1316L 0.05 tolerated(0.21) possibly_damaging(0.809) TCGA-EB-A3XD-01 15 75044538 75044538 C T CYP1A2 Silent p.I372I 0.08 TCGA-EB-A3XD-01 15 79058840 79058840 C T ADAMTS7 Missense_Mutation p.G1138D 0.18 tolerated(0.2) benign(0.007) TCGA-EB-A3XD-01 16 20792028 20792028 C T ACSM3 Intron 0.06 TCGA-EB-A3XD-01 16 22926530 22926530 G A HS3ST2 Missense_Mutation p.G251S 0.11 deleterious(0) probably_damaging(0.983) TCGA-EB-A3XD-01 16 27895832 27895832 G A GSG1L Silent p.F175F 0.18 TCGA-EB-A3XD-01 16 31471225 31471225 A G ARMC5 Missense_Mutation p.K127R 0.06 tolerated(0.31) benign(0.027) TCGA-EB-A3XD-01 16 3777981 3777981 G A CREBBP Missense_Mutation p.S2356F 0.12 unknown(0) TCGA-EB-A3XD-01 16 55883624 55883624 C T CES5A Silent p.T474T 0.09 TCGA-EB-A3XD-01 16 56678689 56678689 G A MT1A 3'Flank 0.11 TCGA-EB-A3XD-01 16 67203763 67203763 C T HSF4 3'UTR 0.20 TCGA-EB-A3XD-01 16 71668790 71668790 G A MARVELD3 Intron 0.16 TCGA-EB-A3XD-01 16 72184716 72184716 C T PMFBP1 Missense_Mutation p.E143K 0.06 deleterious(0) probably_damaging(0.987) TCGA-EB-A3XD-01 16 75147661 75147661 C T LDHD Missense_Mutation p.E336K 0.12 tolerated(0.91) benign(0.013) TCGA-EB-A3XD-01 16 7703888 7703888 C T RBFOX1 Missense_Mutation p.R297C 0.11 deleterious(0) possibly_damaging(0.78) TCGA-EB-A3XD-01 16 812724 812724 C T MSLN Missense_Mutation p.T15I 0.07 tolerated(0.31) benign(0.008) TCGA-EB-A3XD-01 16 88691145 88691145 C T ZC3H18 Silent p.P678P 0.13 TCGA-EB-A3XD-01 16 89348218 89348218 G A ANKRD11 Silent p.L1578L 0.09 TCGA-EB-A3XD-01 17 10219297 10219297 C T MYH13 Missense_Mutation p.E1262K 0.11 deleterious(0) probably_damaging(0.992) TCGA-EB-A3XD-01 17 10304406 10304406 C T MYH8 Missense_Mutation p.D1071N 0.05 tolerated(0.06) probably_damaging(1) TCGA-EB-A3XD-01 17 10310224 10310224 C T MYH8 Missense_Mutation p.E680K 0.10 deleterious(0.01) possibly_damaging(0.757) TCGA-EB-A3XD-01 17 10354649 10354649 C T MYH4 Missense_Mutation p.E1287K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XD-01 17 10428104 10428104 C T MYH2 Silent p.R1647R 0.11 TCGA-EB-A3XD-01 17 10441027 10441027 G A MYH2 Silent p.I514I 0.09 TCGA-EB-A3XD-01 17 1340138 1340138 G A CRK Missense_Mutation p.P185S 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-EB-A3XD-01 17 17698260 17698260 C T RAI1 Silent p.A666A 0.08 TCGA-EB-A3XD-01 17 17700925 17700925 G A RAI1 Missense_Mutation p.G1555R 0.04 deleterious(0.03) benign(0.005) TCGA-EB-A3XD-01 17 17924547 17924547 C T ATPAF2 Missense_Mutation p.E208K 0.14 tolerated(0.24) benign(0.168) TCGA-EB-A3XD-01 17 18882979 18882979 C T FAM83G Missense_Mutation p.R233K 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XD-01 17 33288404 33288404 C A CCT6B Silent p.A3A 0.09 TCGA-EB-A3XD-01 17 33448701 33448701 C T FNDC8 5'UTR 0.09 TCGA-EB-A3XD-01 17 33680049 33680049 C T SLFN11 Missense_Mutation p.G678R 0.05 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 17 41132587 41132587 C T RUNDC1 5'UTR 0.15 TCGA-EB-A3XD-01 17 42337219 42337219 G A SLC4A1 Silent p.L189L 0.20 TCGA-EB-A3XD-01 17 43531100 43531100 G A PLEKHM1 Silent p.S706S 0.06 TCGA-EB-A3XD-01 17 4535500 4535500 T C ALOX15 Silent p.Q539Q 0.05 TCGA-EB-A3XD-01 17 4536722 4536722 C T ALOX15 Missense_Mutation p.G412E 0.06 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 17 74006137 74006137 G A EVPL Missense_Mutation p.S1050L 0.04 tolerated(0.23) benign(0.003) TCGA-EB-A3XD-01 17 74073304 74073304 C T GALR2 Missense_Mutation p.S319L 0.16 tolerated(0.19) benign(0.184) TCGA-EB-A3XD-01 17 74077588 74077588 C T EXOC7 3'Flank 0.05 TCGA-EB-A3XD-01 17 74077589 74077589 C T EXOC7 3'Flank 0.05 TCGA-EB-A3XD-01 17 78971075 78971075 C T CHMP6 Silent p.L143L 0.20 TCGA-EB-A3XD-01 17 8222824 8222824 C T ARHGEF15 Silent p.S759S 0.06 TCGA-EB-A3XD-01 17 9631487 9631487 C T USP43 Missense_Mutation p.S851L 0.16 deleterious(0.01) benign(0.007) TCGA-EB-A3XD-01 18 21136395 21136395 G A NPC1 Missense_Mutation p.L380F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XD-01 18 2891840 2891840 A G EMILIN2 Missense_Mutation p.E572G 0.10 tolerated(0.16) benign(0.169) TCGA-EB-A3XD-01 18 30092842 30092842 G A WBP11P1 RNA 0.07 TCGA-EB-A3XD-01 18 31325318 31325318 G A ASXL3 Missense_Mutation p.G1836R 0.10 probably_damaging(1) TCGA-EB-A3XD-01 18 44560884 44560884 T C TCEB3B Missense_Mutation p.E251G 0.09 deleterious(0) benign(0.007) TCGA-EB-A3XD-01 18 46447842 46447842 G A SMAD7 Missense_Mutation p.T394I 0.07 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XD-01 18 56202135 56202135 C T ALPK2 Missense_Mutation p.E1762K 0.09 deleterious(0.02) benign(0.397) TCGA-EB-A3XD-01 18 61325795 61325795 C T SERPINB3 Missense_Mutation p.E141K 0.11 deleterious(0.01) benign(0.349) TCGA-EB-A3XD-01 19 10106908 10106908 C T COL5A3 Missense_Mutation p.G485R 0.09 unknown(0) TCGA-EB-A3XD-01 19 11216168 11216168 C T LDLR Missense_Mutation p.P196S 0.11 tolerated(0.11) benign(0.295) TCGA-EB-A3XD-01 19 12989323 12989323 G A DNASE2 Silent p.F194F 0.10 TCGA-EB-A3XD-01 19 14513596 14513596 A G CD97 Silent p.E457E 0.11 TCGA-EB-A3XD-01 19 15794500 15794500 G A CYP4F12 Missense_Mutation p.G282D 0.07 tolerated(0.06) benign(0.033) TCGA-EB-A3XD-01 19 16060459 16060459 C T OR10H4 Silent p.F214F 0.08 TCGA-EB-A3XD-01 19 17892536 17892536 C T FCHO1 Missense_Mutation p.P615L 0.07 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 19 18179295 18179295 C T IL12RB1 Missense_Mutation p.E411K 0.03 tolerated(0.27) benign(0.007) TCGA-EB-A3XD-01 19 34818928 34818928 G A KIAA0355 Missense_Mutation p.G326R 0.04 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A3XD-01 19 36205434 36205434 G A ZBTB32 5'UTR 0.04 TCGA-EB-A3XD-01 19 3783205 3783205 C T MATK Missense_Mutation p.D200N 0.13 tolerated(0.2) benign(0) TCGA-EB-A3XD-01 19 39575786 39575786 C T PAPL 5'UTR 0.11 TCGA-EB-A3XD-01 19 39575787 39575787 C T PAPL 5'UTR 0.11 TCGA-EB-A3XD-01 19 40712051 40712051 C T MAP3K10 Silent p.I474I 0.09 TCGA-EB-A3XD-01 19 40903059 40903059 G A PRX Silent p.L400L 0.07 TCGA-EB-A3XD-01 19 41206032 41206032 G A ADCK4 Silent p.F361F 0.06 TCGA-EB-A3XD-01 19 41442124 41442124 G A CYP2B7P RNA 0.05 TCGA-EB-A3XD-01 19 42192053 42192053 G A CEACAM7 Silent p.P14P 0.06 TCGA-EB-A3XD-01 19 44223009 44223009 C T IRGC Missense_Mutation p.P100L 0.11 tolerated(0.06) possibly_damaging(0.825) TCGA-EB-A3XD-01 19 44602010 44602010 C T ZNF224 5'UTR 0.09 TCGA-EB-A3XD-01 19 44932727 44932727 G A ZNF229 Silent p.H743H 0.11 TCGA-EB-A3XD-01 19 50412412 50412412 C T NUP62 Missense_Mutation p.G218E 0.04 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A3XD-01 19 50464072 50464072 G A SIGLEC11 Missense_Mutation p.S66F 0.10 deleterious(0.03) benign(0.203) TCGA-EB-A3XD-01 19 51955776 51955776 G A SIGLEC8 Missense_Mutation p.H453Y 0.06 deleterious(0.01) possibly_damaging(0.574) TCGA-EB-A3XD-01 19 53668215 53668215 C T ZNF665 Missense_Mutation p.G510R 0.07 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A3XD-01 19 54646886 54646886 C T CNOT3 Silent p.S19S 0.04 TCGA-EB-A3XD-01 19 55046997 55046997 C T KIR3DX1 Missense_Mutation p.S181F 0.10 tolerated(0.11) benign(0.14) TCGA-EB-A3XD-01 19 56313060 56313060 C T NLRP11 Silent p.K683K 0.09 TCGA-EB-A3XD-01 19 56423969 56423969 A G NLRP13 Missense_Mutation p.V405A 0.10 tolerated(1) benign(0.001) TCGA-EB-A3XD-01 19 56424525 56424525 C T NLRP13 Missense_Mutation p.D220N 0.12 tolerated(0.81) benign(0.103) TCGA-EB-A3XD-01 19 56549454 56549454 C T NLRP5 Silent p.S893S 0.05 TCGA-EB-A3XD-01 19 56934475 56934475 C T ZNF583 Missense_Mutation p.L150F 0.08 tolerated(0.41) benign(0.001) TCGA-EB-A3XD-01 19 5790260 5790260 G A DUS3L Missense_Mutation p.P62L 0.10 deleterious(0.05) benign(0.005) TCGA-EB-A3XD-01 19 746337 746337 C T PALM Silent p.S229S 0.10 TCGA-EB-A3XD-01 19 8587408 8587408 C T MYO1F Missense_Mutation p.G1025R 0.08 tolerated(0.16) benign(0.002) TCGA-EB-A3XD-01 19 9069097 9069097 C T MUC16 Missense_Mutation p.D6117N 0.07 unknown(0) TCGA-EB-A3XD-01 19 9089551 9089551 C T MUC16 Missense_Mutation p.G755E 0.08 unknown(0) TCGA-EB-A3XD-01 19 9091275 9091275 C T MUC16 Nonsense_Mutation p.W180* 0.04 TCGA-EB-A3XD-01 1 11766511 11766511 G A DRAXIN Missense_Mutation p.E66K 0.09 tolerated(0.1) benign(0.397) TCGA-EB-A3XD-01 1 118550670 118550670 G A SPAG17 Silent p.Y1528Y 0.09 TCGA-EB-A3XD-01 1 147380904 147380904 C T GJA8 Silent p.I274I 0.10 TCGA-EB-A3XD-01 1 149878254 149878254 C T SV2A Silent p.G611G 0.11 TCGA-EB-A3XD-01 1 150471474 150471474 C T TARS2 Silent p.F501F 0.08 TCGA-EB-A3XD-01 1 152191731 152191731 C T HRNR Missense_Mutation p.G792S 0.07 unknown(0) TCGA-EB-A3XD-01 1 152279951 152279951 C T FLG Missense_Mutation p.G2471R 0.12 probably_damaging(0.988) TCGA-EB-A3XD-01 1 152281894 152281894 C T FLG Missense_Mutation p.G1823E 0.03 probably_damaging(0.931) TCGA-EB-A3XD-01 1 152327549 152327549 C T FLG2 Missense_Mutation p.G905R 0.09 unknown(0) TCGA-EB-A3XD-01 1 154938691 154938691 A G SHC1 Missense_Mutation p.V400A 0.10 tolerated(0.62) benign(0.001) TCGA-EB-A3XD-01 1 155233803 155233803 G A CLK2 Silent p.L418L 0.08 TCGA-EB-A3XD-01 1 156105792 156105792 C T LMNA Missense_Mutation p.A346V 0.09 deleterious(0.03) possibly_damaging(0.649) TCGA-EB-A3XD-01 1 156105793 156105793 C T LMNA Silent p.A346A 0.09 TCGA-EB-A3XD-01 1 156352440 156352440 T C RHBG Intron 0.10 TCGA-EB-A3XD-01 1 156906023 156906023 C T ARHGEF11 Intron 0.06 TCGA-EB-A3XD-01 1 158389833 158389833 G A OR10K2 Missense_Mutation p.S275L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XD-01 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.10 tolerated(1) benign(0) TCGA-EB-A3XD-01 1 161145865 161145865 C T B4GALT3 Splice_Site 0.11 TCGA-EB-A3XD-01 1 161334778 161334778 G C C1orf192 Missense_Mutation p.P171A 0.11 deleterious_low_confidence(0.05) benign(0.079) TCGA-EB-A3XD-01 1 16258504 16258504 C T SPEN Silent p.P1923P 0.06 TCGA-EB-A3XD-01 1 169513601 169513601 C T F5 Silent p.R636R 0.12 TCGA-EB-A3XD-01 1 172376984 172376984 G A DNM3 3'UTR 0.06 TCGA-EB-A3XD-01 1 175348711 175348711 G A TNR Missense_Mutation p.P647L 0.07 tolerated(0.31) benign(0.026) TCGA-EB-A3XD-01 1 175362949 175362949 G A TNR Silent p.S441S 0.03 TCGA-EB-A3XD-01 1 196695652 196695652 G A CFH Silent p.K642K 0.13 TCGA-EB-A3XD-01 1 200376666 200376666 G A ZNF281 Missense_Mutation p.S723F 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A3XD-01 1 203317042 203317042 G A FMOD Silent p.S119S 0.08 TCGA-EB-A3XD-01 1 205495587 205495587 C T CDK18 Silent p.L252L 0.04 TCGA-EB-A3XD-01 1 207307800 207307800 G A C4BPA Missense_Mutation p.R379K 0.13 tolerated(0.51) benign(0.006) TCGA-EB-A3XD-01 1 209800877 209800877 C T LAMB3 Missense_Mutation p.E446K 0.06 tolerated(0.19) benign(0.165) TCGA-EB-A3XD-01 1 215844390 215844390 G A USH2A Missense_Mutation p.P4686L 0.06 benign(0.02) TCGA-EB-A3XD-01 1 216824393 216824393 C T ESRRG Missense_Mutation p.E176K 0.06 deleterious(0) possibly_damaging(0.641) TCGA-EB-A3XD-01 1 229433301 229433301 C T RAB4A Silent p.I121I 0.10 TCGA-EB-A3XD-01 1 22965496 22965496 C T C1QA Nonsense_Mutation p.Q112* 0.15 TCGA-EB-A3XD-01 1 22987431 22987431 G A C1QB Missense_Mutation p.G105E 0.06 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.04 TCGA-EB-A3XD-01 1 24495953 24495953 G A IFNLR1 Silent p.S107S 0.08 TCGA-EB-A3XD-01 1 248058984 248058984 G A OR2W3 Silent p.L32L 0.14 TCGA-EB-A3XD-01 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.10 deleterious(0.02) benign(0.33) TCGA-EB-A3XD-01 1 248569658 248569658 G A OR2T1 Missense_Mutation p.M121I 0.04 tolerated(0.27) benign(0.02) TCGA-EB-A3XD-01 1 248737528 248737528 C T OR2T34 Silent p.R177R 0.07 TCGA-EB-A3XD-01 1 248756679 248756679 G A OR2T10 Missense_Mutation p.R131C 0.06 deleterious(0.01) benign(0.014) TCGA-EB-A3XD-01 1 25572954 25572954 G A C1orf63 Silent p.P167P 0.07 TCGA-EB-A3XD-01 1 34090712 34090712 G A CSMD2 Silent p.I1773I 0.06 TCGA-EB-A3XD-01 1 34174927 34174927 C T CSMD2 Intron 0.16 TCGA-EB-A3XD-01 1 36755340 36755340 G A THRAP3 Missense_Mutation p.D574N 0.10 deleterious(0.04) probably_damaging(0.987) TCGA-EB-A3XD-01 1 3683104 3683104 C T CCDC27 Silent p.S486S 0.06 TCGA-EB-A3XD-01 1 43806136 43806136 C T MPL Missense_Mutation p.S311F 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A3XD-01 1 46033816 46033816 C T AKR1A1 Silent p.L173L 0.12 TCGA-EB-A3XD-01 1 75055294 75055294 C G C1orf173 Intron 0.05 TCGA-EB-A3XD-01 1 86822195 86822195 C G ODF2L Missense_Mutation p.E484Q 0.11 tolerated(0.1) possibly_damaging(0.837) TCGA-EB-A3XD-01 1 86822196 86822196 C T ODF2L Silent p.Q483Q 0.11 TCGA-EB-A3XD-01 1 90178512 90178512 C T LRRC8C Missense_Mutation p.P128L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XD-01 20 13867056 13867056 G A SEL1L2 Missense_Mutation p.P260S 0.09 tolerated(0.07) probably_damaging(0.959) TCGA-EB-A3XD-01 20 14307132 14307132 G A FLRT3 Missense_Mutation p.R341C 0.08 deleterious(0) probably_damaging(0.97) TCGA-EB-A3XD-01 20 1629840 1629840 C T SIRPG Silent p.K96K 0.15 TCGA-EB-A3XD-01 20 18608809 18608809 A C DTD1 Missense_Mutation p.N137H 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A3XD-01 20 20453564 20453564 C T RALGAPA2 Missense_Mutation p.V1802M 0.08 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XD-01 20 2573013 2573013 G A TMC2 Missense_Mutation p.E298K 0.04 tolerated(0.46) benign(0.011) TCGA-EB-A3XD-01 20 2774958 2774958 G A CPXM1 Missense_Mutation p.P695S 0.09 tolerated(0.78) benign(0.065) TCGA-EB-A3XD-01 20 30749159 30749159 C T TM9SF4 Silent p.F590F 0.05 TCGA-EB-A3XD-01 20 31631125 31631125 G A BPIFB6 Silent p.P427P 0.07 TCGA-EB-A3XD-01 20 31631126 31631126 G A BPIFB6 Missense_Mutation p.D428N 0.07 tolerated(0.3) benign(0.058) TCGA-EB-A3XD-01 20 31652327 31652327 C T BPIFB3 Silent p.S239S 0.15 TCGA-EB-A3XD-01 20 31827627 31827627 C T BPIFA1 Silent p.P113P 0.05 TCGA-EB-A3XD-01 20 3734648 3734648 G A C20orf27 3'UTR 0.16 TCGA-EB-A3XD-01 20 40790158 40790158 G A PTPRT Missense_Mutation p.S839F 0.17 deleterious(0) benign(0.1) TCGA-EB-A3XD-01 20 42826253 42826253 G A OSER1 Silent p.L106L 0.06 TCGA-EB-A3XD-01 20 43938288 43938288 C T RBPJL Silent p.I71I 0.10 TCGA-EB-A3XD-01 20 49218716 49218716 C T FAM65C Missense_Mutation p.E514K 0.18 tolerated(0.12) benign(0.396) TCGA-EB-A3XD-01 20 60962424 60962424 C T RPS21 Silent p.D10D 0.15 TCGA-EB-A3XD-01 20 60966461 60966461 G A CABLES2 Silent p.P380P 0.06 TCGA-EB-A3XD-01 20 61524251 61524251 G A DIDO1 Silent p.T1055T 0.14 TCGA-EB-A3XD-01 20 62191389 62191389 C T HELZ2 Missense_Mutation p.D2573N 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 20 76798 76798 C T DEFB125 Missense_Mutation p.P71S 0.05 deleterious(0.04) benign(0.02) TCGA-EB-A3XD-01 20 8665694 8665694 C T PLCB1 Silent p.F326F 0.16 TCGA-EB-A3XD-01 20 8862293 8862293 T C PLCB1 Missense_Mutation p.Y1150H 0.04 tolerated(0.13) possibly_damaging(0.885) TCGA-EB-A3XD-01 20 9496973 9496973 C T LAMP5 Missense_Mutation p.S147F 0.07 deleterious(0) possibly_damaging(0.857) TCGA-EB-A3XD-01 21 19653413 19653413 C T TMPRSS15 Missense_Mutation p.R871Q 0.07 tolerated(0.21) benign(0.001) TCGA-EB-A3XD-01 21 31655059 31655059 G A KRTAP24-1 Silent p.S64S 0.09 TCGA-EB-A3XD-01 21 31655060 31655060 G A KRTAP24-1 Missense_Mutation p.S64F 0.09 tolerated(0.05) probably_damaging(0.951) TCGA-EB-A3XD-01 21 35821548 35821548 G A KCNE1 Missense_Mutation p.P129S 0.10 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EB-A3XD-01 21 41450730 41450730 G A DSCAM Missense_Mutation p.S1532F 0.09 deleterious(0.01) possibly_damaging(0.793) TCGA-EB-A3XD-01 21 43411620 43411620 G A ZBTB21 Missense_Mutation p.S862F 0.05 deleterious(0.02) possibly_damaging(0.896) TCGA-EB-A3XD-01 22 23523587 23523587 C T BCR Missense_Mutation p.P147L 0.08 tolerated_low_confidence(0.17) benign(0.021) TCGA-EB-A3XD-01 22 24466778 24466778 C T CABIN1 Missense_Mutation p.R754W 0.08 deleterious(0) possibly_damaging(0.487) TCGA-EB-A3XD-01 22 32756547 32756547 G A RFPL3 Missense_Mutation p.A228T 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A3XD-01 22 35481510 35481510 G A ISX Missense_Mutation p.A188T 0.08 tolerated(0.22) benign(0.016) TCGA-EB-A3XD-01 22 38894457 38894457 C T DDX17 Silent p.G220G 0.10 TCGA-EB-A3XD-01 22 45767374 45767374 C T SMC1B Missense_Mutation p.E764K 0.10 tolerated(0.27) benign(0.023) TCGA-EB-A3XD-01 2 105696467 105696467 C T MRPS9 Missense_Mutation p.P146S 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 2 107459973 107459973 C T ST6GAL2 Missense_Mutation p.G154E 0.06 benign(0.001) TCGA-EB-A3XD-01 2 108626876 108626876 G A SLC5A7 Silent p.G434G 0.06 TCGA-EB-A3XD-01 2 110849283 110849283 C T MALL Missense_Mutation p.G57E 0.04 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 2 113940658 113940658 G A PSD4 Missense_Mutation p.E209K 0.08 deleterious_low_confidence(0.01) benign(0.298) TCGA-EB-A3XD-01 2 118758452 118758452 A T CCDC93 Missense_Mutation p.L103Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XD-01 2 121554972 121554972 C T GLI2 Missense_Mutation p.P26S 0.10 tolerated_low_confidence(0.35) probably_damaging(0.996) TCGA-EB-A3XD-01 2 125547543 125547543 G A CNTNAP5 Silent p.Q938Q 0.13 TCGA-EB-A3XD-01 2 127811009 127811009 C T BIN1 Missense_Mutation p.D418N 0.12 deleterious(0) benign(0.005) TCGA-EB-A3XD-01 2 1520694 1520694 C T TPO Missense_Mutation p.S853L 0.10 tolerated(0.15) benign(0.008) TCGA-EB-A3XD-01 2 153475610 153475610 C T FMNL2 Missense_Mutation p.S522F 0.06 probably_damaging(0.921) TCGA-EB-A3XD-01 2 160808026 160808026 C T PLA2R1 Missense_Mutation p.G1122E 0.08 deleterious(0.05) possibly_damaging(0.883) TCGA-EB-A3XD-01 2 162751276 162751276 C T SLC4A10 Missense_Mutation p.P428S 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 2 169020356 169020356 G A STK39 Silent p.N155N 0.10 TCGA-EB-A3XD-01 2 179412733 179412733 T C TTN Missense_Mutation p.K31207R 0.08 TCGA-EB-A3XD-01 2 179428361 179428361 C T TTN Missense_Mutation p.E27500K 0.06 TCGA-EB-A3XD-01 2 179584752 179584752 C T TTN Missense_Mutation p.D7873N 0.14 TCGA-EB-A3XD-01 2 179604592 179604592 G A TTN Silent p.T4456T 0.05 TCGA-EB-A3XD-01 2 180634464 180634464 G A ZNF385B Silent p.L7L 0.09 TCGA-EB-A3XD-01 2 189855763 189855763 A T COL3A1 Missense_Mutation p.T278S 0.10 unknown(0) TCGA-EB-A3XD-01 2 189859549 189859549 G A COL3A1 Missense_Mutation p.G483R 0.05 unknown(0) TCGA-EB-A3XD-01 2 192700701 192700701 G A SDPR Missense_Mutation p.S409F 0.13 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-EB-A3XD-01 2 196741396 196741396 C T DNAH7 Missense_Mutation p.E1997K 0.12 tolerated(0.11) benign(0.039) TCGA-EB-A3XD-01 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.07 deleterious(0) possibly_damaging(0.846) TCGA-EB-A3XD-01 2 197090573 197090573 G A HECW2 Silent p.I1313I 0.11 TCGA-EB-A3XD-01 2 215884074 215884074 G A ABCA12 Missense_Mutation p.A548V 0.12 tolerated(0.49) benign(0.001) TCGA-EB-A3XD-01 2 219297672 219297672 C T VIL1 Nonsense_Mutation p.Q500* 0.11 TCGA-EB-A3XD-01 2 219942832 219942832 C T NHEJ1 Missense_Mutation p.G229R 0.06 tolerated(0.73) benign(0.001) TCGA-EB-A3XD-01 2 223504379 223504379 A G FARSB Silent p.V125V 0.15 TCGA-EB-A3XD-01 2 227660301 227660302 - T IRS1 Frame_Shift_Ins p.E1052Rfs*29 0.13 TCGA-EB-A3XD-01 2 228883851 228883851 C T SPHKAP Silent p.L573L 0.09 TCGA-EB-A3XD-01 2 233243720 233243720 C T ALPP Missense_Mutation p.A39V 0.10 tolerated(0.13) benign(0.047) TCGA-EB-A3XD-01 2 233243721 233243721 C T ALPP Silent p.A39A 0.09 TCGA-EB-A3XD-01 2 239179979 239179979 G A PER2 Missense_Mutation p.P249L 0.06 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XD-01 2 241700646 241700646 C T KIF1A Silent p.K755K 0.04 TCGA-EB-A3XD-01 2 27886751 27886751 G A SLC4A1AP Silent p.K44K 0.08 TCGA-EB-A3XD-01 2 27886752 27886752 G A SLC4A1AP Missense_Mutation p.E45K 0.08 tolerated_low_confidence(0.3) benign(0.012) TCGA-EB-A3XD-01 2 32718649 32718649 C T BIRC6 Nonsense_Mutation p.R2795* 0.08 TCGA-EB-A3XD-01 2 46987291 46987291 C T SOCS5 3'UTR 0.09 TCGA-EB-A3XD-01 2 74699706 74699706 C T MRPL53 Missense_Mutation p.E28K 0.04 tolerated(0.06) probably_damaging(0.91) TCGA-EB-A3XD-01 2 74757235 74757235 C T HTRA2 Silent p.D34D 0.09 TCGA-EB-A3XD-01 2 84518361 84518361 G A FUNDC2P2 RNA 0.08 TCGA-EB-A3XD-01 3 100352132 100352132 T C GPR128 Silent p.L120L 0.07 TCGA-EB-A3XD-01 3 113850136 113850136 C T DRD3 Missense_Mutation p.E279K 0.11 tolerated(0.64) benign(0.06) TCGA-EB-A3XD-01 3 114014438 114014438 G A TIGIT Silent p.E36E 0.04 TCGA-EB-A3XD-01 3 119190166 119190166 G A POGLUT1 Missense_Mutation p.E63K 0.05 tolerated(0.79) benign(0.004) TCGA-EB-A3XD-01 3 121203990 121203990 G A POLQ Missense_Mutation p.P1891S 0.12 deleterious(0.04) benign(0.244) TCGA-EB-A3XD-01 3 123452616 123452616 C T MYLK Silent p.R409R 0.05 TCGA-EB-A3XD-01 3 142521128 142521128 G A TRPC1 Missense_Mutation p.E567K 0.09 tolerated(0.11) benign(0.032) TCGA-EB-A3XD-01 3 148714596 148714596 C T GYG1 Missense_Mutation p.P129L 0.05 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 3 170140979 170140979 G A CLDN11 Missense_Mutation p.M85I 0.06 deleterious(0.01) benign(0.063) TCGA-EB-A3XD-01 3 170204061 170204061 G A SLC7A14 Missense_Mutation p.P286S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XD-01 3 178916570 178916570 C T PIK3CA 5'UTR 0.09 TCGA-EB-A3XD-01 3 185643322 185643322 C T TRA2B Missense_Mutation p.R88Q 0.04 tolerated(0.22) unknown(0) TCGA-EB-A3XD-01 3 185975716 185975716 G A DGKG Silent p.F479F 0.09 TCGA-EB-A3XD-01 3 189526279 189526279 C T TP63 Silent p.F181F 0.08 TCGA-EB-A3XD-01 3 189526280 189526280 C T TP63 Nonsense_Mutation p.Q182* 0.08 TCGA-EB-A3XD-01 3 19947234 19947234 T C EFHB Silent p.A432A 0.13 TCGA-EB-A3XD-01 3 21467126 21467126 C T ZNF385D Missense_Mutation p.G237E 0.10 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XD-01 3 26751407 26751407 G A LRRC3B Missense_Mutation p.E82K 0.08 tolerated(0.11) benign(0.136) TCGA-EB-A3XD-01 3 27233714 27233714 C T NEK10 Missense_Mutation p.E771K 0.08 deleterious(0.01) benign(0.177) TCGA-EB-A3XD-01 3 42906640 42906640 C T ACKR2 Missense_Mutation p.L216F 0.03 deleterious(0.04) benign(0.119) TCGA-EB-A3XD-01 3 45589154 45589154 G A LARS2 3'UTR 0.14 TCGA-EB-A3XD-01 3 46009500 46009500 C T FYCO1 Silent p.R442R 0.08 TCGA-EB-A3XD-01 3 46497366 46497366 C T LTF Missense_Mutation p.R140K 0.12 tolerated(0.28) benign(0.095) TCGA-EB-A3XD-01 3 48612255 48612255 C T COL7A1 Missense_Mutation p.G2108E 0.06 unknown(0) TCGA-EB-A3XD-01 3 50329948 50329948 G A IFRD2 5'Flank 0.11 TCGA-EB-A3XD-01 3 50617645 50617645 G A HEMK1 Missense_Mutation p.R322K 0.10 tolerated(1) benign(0) TCGA-EB-A3XD-01 3 50683641 50683641 C T MAPKAPK3 Missense_Mutation p.R259C 0.04 deleterious(0) probably_damaging(0.982) TCGA-EB-A3XD-01 3 52486252 52486252 G A TNNC1 Silent p.F24F 0.07 TCGA-EB-A3XD-01 3 7348285 7348285 G A GRM7 Missense_Mutation p.E327K 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3XD-01 4 100231953 100231953 C T ADH1B Missense_Mutation p.E358K 0.08 tolerated(0.17) possibly_damaging(0.526) TCGA-EB-A3XD-01 4 100237199 100237199 G A ADH1B Silent p.F141F 0.11 TCGA-EB-A3XD-01 4 107845734 107845734 C T DKK2 Missense_Mutation p.G166E 0.07 tolerated(0.06) probably_damaging(0.998) TCGA-EB-A3XD-01 4 110882145 110882145 C T EGF Nonsense_Mutation p.Q397* 0.16 TCGA-EB-A3XD-01 4 122683021 122683021 G A TMEM155 Silent p.I6I 0.09 TCGA-EB-A3XD-01 4 126402785 126402785 C T FAT4 Silent p.A4236A 0.06 TCGA-EB-A3XD-01 4 140811827 140811827 G A MAML3 Missense_Mutation p.P255S 0.09 benign(0.014) TCGA-EB-A3XD-01 4 155508050 155508050 G A FGA Silent p.I177I 0.09 TCGA-EB-A3XD-01 4 156764950 156764950 G A ASIC5 Silent p.F248F 0.08 TCGA-EB-A3XD-01 4 183664489 183664489 C T TENM3 Silent p.I1182I 0.09 TCGA-EB-A3XD-01 4 185698103 185698103 G A ACSL1 Missense_Mutation p.S171L 0.15 deleterious(0) probably_damaging(0.983) TCGA-EB-A3XD-01 4 20569182 20569182 C T SLIT2 Silent p.N964N 0.08 TCGA-EB-A3XD-01 4 25792133 25792133 C T SEL1L3 Missense_Mutation p.G674R 0.06 deleterious(0.01) possibly_damaging(0.864) TCGA-EB-A3XD-01 4 40356304 40356304 G A CHRNA9 Missense_Mutation p.D403N 0.10 tolerated(0.49) benign(0.002) TCGA-EB-A3XD-01 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.11 TCGA-EB-A3XD-01 4 47667058 47667058 G A CORIN Missense_Mutation p.P527L 0.12 tolerated(0.14) possibly_damaging(0.893) TCGA-EB-A3XD-01 4 48993541 48993541 C T CWH43 Silent p.S102S 0.09 TCGA-EB-A3XD-01 4 5975492 5975492 C T C4orf50 Missense_Mutation p.R575K 0.05 deleterious(0.01) possibly_damaging(0.815) TCGA-EB-A3XD-01 4 70721046 70721046 C T SULT1E1 Missense_Mutation p.E82K 0.11 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XD-01 4 70721113 70721113 C T SULT1E1 Missense_Mutation p.M59I 0.10 deleterious(0.01) benign(0.178) TCGA-EB-A3XD-01 4 74313370 74313370 G A AFP Silent p.G345G 0.12 TCGA-EB-A3XD-01 4 7844984 7844984 G A AFAP1 Missense_Mutation p.S143F 0.06 deleterious(0) probably_damaging(0.973) TCGA-EB-A3XD-01 4 79205600 79205600 G A FRAS1 Missense_Mutation p.D433N 0.04 benign(0.027) TCGA-EB-A3XD-01 4 8465751 8465751 G T TRMT44 Missense_Mutation p.D415Y 0.08 deleterious(0) possibly_damaging(0.649) TCGA-EB-A3XD-01 4 8469765 8469765 C T TRMT44 Missense_Mutation p.S540F 0.09 deleterious(0.02) benign(0.002) TCGA-EB-A3XD-01 4 8620195 8620195 G A CPZ Missense_Mutation p.G515S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A3XD-01 4 87022316 87022316 C T MAPK10 Missense_Mutation p.D207N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XD-01 4 88767038 88767038 G A MEPE Missense_Mutation p.D340N 0.07 tolerated(0.06) benign(0.119) TCGA-EB-A3XD-01 4 90816662 90816662 G A MMRN1 Silent p.R180R 0.10 TCGA-EB-A3XD-01 5 112769552 112769552 C T TSSK1B Missense_Mutation p.E329K 0.17 tolerated_low_confidence(0.1) benign(0.002) TCGA-EB-A3XD-01 5 115148929 115148929 C T CDO1 Missense_Mutation p.G66E 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 5 127637148 127637148 A T FBN2 Missense_Mutation p.F1991Y 0.09 tolerated(0.58) benign(0.012) TCGA-EB-A3XD-01 5 128362849 128362849 C T SLC27A6 Nonsense_Mutation p.R427* 0.16 TCGA-EB-A3XD-01 5 131546056 131546056 C A P4HA2 Silent p.L210L 0.10 TCGA-EB-A3XD-01 5 13714594 13714594 C T DNAH5 Missense_Mutation p.D4349N 0.10 benign(0.005) TCGA-EB-A3XD-01 5 13737588 13737588 C T DNAH5 Missense_Mutation p.R3743K 0.14 benign(0.22) TCGA-EB-A3XD-01 5 13753398 13753398 G A DNAH5 Missense_Mutation p.P3606S 0.06 possibly_damaging(0.876) TCGA-EB-A3XD-01 5 13809241 13809241 G A DNAH5 Missense_Mutation p.T2555I 0.09 possibly_damaging(0.803) TCGA-EB-A3XD-01 5 140166458 140166458 G A PCDHA1 Missense_Mutation p.E195K 0.11 deleterious_low_confidence(0.01) benign(0.005) TCGA-EB-A3XD-01 5 140181436 140181436 G A PCDHA3 Silent p.G218G 0.10 TCGA-EB-A3XD-01 5 140203180 140203180 C T PCDHA5 Missense_Mutation p.S607L 0.16 tolerated_low_confidence(0.05) possibly_damaging(0.511) TCGA-EB-A3XD-01 5 140214502 140214502 C T PCDHA7 Silent p.F178F 0.08 TCGA-EB-A3XD-01 5 140237669 140237669 C T PCDHA10 Missense_Mutation p.S679L 0.11 tolerated_low_confidence(0.1) benign(0.009) TCGA-EB-A3XD-01 5 140256422 140256422 C T PCDHA12 Silent p.F455F 0.14 TCGA-EB-A3XD-01 5 140262783 140262783 C T PCDHA13 Silent p.F310F 0.11 TCGA-EB-A3XD-01 5 140480173 140480173 C T PCDHB3 5'Flank 0.09 TCGA-EB-A3XD-01 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.12 TCGA-EB-A3XD-01 5 140559463 140559463 C T PCDHB8 Silent p.F616F 0.09 TCGA-EB-A3XD-01 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.09 deleterious(0.04) benign(0.008) TCGA-EB-A3XD-01 5 140768801 140768801 C T PCDHGB4 Silent p.F450F 0.06 TCGA-EB-A3XD-01 5 140792935 140792935 G A PCDHGA10 Missense_Mutation p.E65K 0.12 tolerated_low_confidence(0.09) benign(0.116) TCGA-EB-A3XD-01 5 1420737 1420737 C T SLC6A3 Missense_Mutation p.D292N 0.08 tolerated(0.41) benign(0.012) TCGA-EB-A3XD-01 5 142258998 142258998 C T ARHGAP26 Silent p.I124I 0.11 TCGA-EB-A3XD-01 5 145894722 145894722 C T GPR151 Missense_Mutation p.G319S 0.08 tolerated(0.29) benign(0.026) TCGA-EB-A3XD-01 5 146997522 146997522 G A JAKMIP2 Silent p.D766D 0.12 TCGA-EB-A3XD-01 5 153030017 153030017 G A GRIA1 Silent p.K206K 0.09 TCGA-EB-A3XD-01 5 153077667 153077667 G A GRIA1 Missense_Mutation p.D410N 0.10 tolerated(0.18) benign(0.197) TCGA-EB-A3XD-01 5 154393444 154393444 C T KIF4B Missense_Mutation p.P9S 0.10 tolerated(0.1) possibly_damaging(0.829) TCGA-EB-A3XD-01 5 158250217 158250217 G A EBF1 Missense_Mutation p.P249S 0.12 deleterious(0.02) benign(0.146) TCGA-EB-A3XD-01 5 162887092 162887092 G A NUDCD2 5'UTR 0.13 TCGA-EB-A3XD-01 5 168119658 168119658 G A SLIT3 Missense_Mutation p.L1044F 0.09 deleterious(0.01) possibly_damaging(0.879) TCGA-EB-A3XD-01 5 176016391 176016391 G A CDHR2 Silent p.R1023R 0.06 TCGA-EB-A3XD-01 5 178417622 178417622 G A GRM6 Missense_Mutation p.T328I 0.15 deleterious(0.01) possibly_damaging(0.903) TCGA-EB-A3XD-01 5 251119 251119 C T SDHA Missense_Mutation p.H522Y 0.05 tolerated_low_confidence(0.36) benign(0.031) TCGA-EB-A3XD-01 5 35874603 35874603 C T IL7R Silent p.V253V 0.08 TCGA-EB-A3XD-01 5 38884058 38884058 G A OSMR Missense_Mutation p.G183E 0.06 tolerated(0.67) benign(0.015) TCGA-EB-A3XD-01 5 41000926 41000926 C T MROH2B Missense_Mutation p.D1402N 0.25 deleterious(0.03) benign(0.013) TCGA-EB-A3XD-01 5 45262159 45262159 G A HCN1 Missense_Mutation p.S846L 0.06 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EB-A3XD-01 5 5463759 5463759 C T KIAA0947 Nonsense_Mutation p.Q1438* 0.06 TCGA-EB-A3XD-01 5 79030121 79030121 G A CMYA5 Missense_Mutation p.D1845N 0.11 benign(0.035) TCGA-EB-A3XD-01 5 79030587 79030587 T C CMYA5 Missense_Mutation p.V2000A 0.10 possibly_damaging(0.857) TCGA-EB-A3XD-01 5 90368365 90368365 T G GPR98 Missense_Mutation p.V6085G 0.16 benign(0.04) TCGA-EB-A3XD-01 6 127517039 127517039 A T RSPO3 Nonsense_Mutation p.K236* 0.09 TCGA-EB-A3XD-01 6 146266598 146266598 G A SHPRH Silent p.I499I 0.12 TCGA-EB-A3XD-01 6 154439956 154439956 G A OPRM1 3'Flank 0.14 TCGA-EB-A3XD-01 6 25921482 25921482 G A SLC17A2 Silent p.T133T 0.11 TCGA-EB-A3XD-01 6 29080253 29080253 C T OR2J3 Missense_Mutation p.H196Y 0.10 tolerated(0.21) possibly_damaging(0.602) TCGA-EB-A3XD-01 6 30571352 30571352 G A PPP1R10 Missense_Mutation p.P555L 0.07 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XD-01 6 31902061 31902061 C T C2 Silent p.S278S 0.10 TCGA-EB-A3XD-01 6 33142311 33142311 C T COL11A2 Missense_Mutation p.G722E 0.09 probably_damaging(0.969) TCGA-EB-A3XD-01 6 33608285 33608285 G A ITPR3 Silent p.V38V 0.12 TCGA-EB-A3XD-01 6 35258483 35258483 C T ZNF76 Silent p.A205A 0.12 TCGA-EB-A3XD-01 6 42796837 42796837 C T GLTSCR1L Missense_Mutation p.H256Y 0.11 tolerated(0.13) probably_damaging(0.945) TCGA-EB-A3XD-01 6 43307487 43307487 G A ZNF318 Silent p.L1417L 0.11 TCGA-EB-A3XD-01 6 7574331 7574331 G A DSP Missense_Mutation p.D715N 0.05 possibly_damaging(0.584) TCGA-EB-A3XD-01 6 75828803 75828803 G A COL12A1 Missense_Mutation p.S2437F 0.05 probably_damaging(0.999) TCGA-EB-A3XD-01 6 7583542 7583542 G A DSP Missense_Mutation p.G2016E 0.09 probably_damaging(1) TCGA-EB-A3XD-01 6 76728558 76728558 G A IMPG1 Silent p.F228F 0.10 TCGA-EB-A3XD-01 7 100162603 100162603 C T AGFG2 Missense_Mutation p.P479S 0.07 deleterious(0) probably_damaging(0.991) TCGA-EB-A3XD-01 7 100364790 100364790 C T ZAN Silent p.R1590R 0.19 TCGA-EB-A3XD-01 7 100684190 100684190 C T MUC17 Missense_Mutation p.P3165S 0.09 possibly_damaging(0.857) TCGA-EB-A3XD-01 7 100696311 100696311 A G MUC17 Missense_Mutation p.N4383S 0.06 unknown(0) TCGA-EB-A3XD-01 7 108128381 108128381 G A PNPLA8 Missense_Mutation p.T567I 0.07 deleterious(0) possibly_damaging(0.731) TCGA-EB-A3XD-01 7 111430568 111430568 G A DOCK4 Missense_Mutation p.P1087L 0.06 deleterious(0) possibly_damaging(0.842) TCGA-EB-A3XD-01 7 11501681 11501681 C T THSD7A Missense_Mutation p.E820K 0.06 deleterious(0) possibly_damaging(0.854) TCGA-EB-A3XD-01 7 128615876 128615876 G A TNPO3 Silent p.L725L 0.10 TCGA-EB-A3XD-01 7 133002086 133002086 C T EXOC4 Silent p.L235L 0.03 TCGA-EB-A3XD-01 7 134632371 134632371 G A CALD1 Missense_Mutation p.E549K 0.21 deleterious(0.03) unknown(0) TCGA-EB-A3XD-01 7 135047828 135047828 G A CNOT4 Missense_Mutation p.P651S 0.07 tolerated_low_confidence(0.22) benign(0) TCGA-EB-A3XD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.10 deleterious(0) probably_damaging(0.967) TCGA-EB-A3XD-01 7 141341091 141341091 C T AGK Missense_Mutation p.P257L 0.05 deleterious(0) probably_damaging(0.992) TCGA-EB-A3XD-01 7 142104378 142104378 G A TRBV6-9 Silent p.F29F 0.12 TCGA-EB-A3XD-01 7 142139732 142139732 G A TRBV7-6 Silent p.F13F 0.09 TCGA-EB-A3XD-01 7 142378935 142378935 C T MTRNR2L6 3'Flank 0.05 TCGA-EB-A3XD-01 7 143701497 143701497 G A OR6B1 Missense_Mutation p.M136I 0.07 deleterious(0.01) benign(0.073) TCGA-EB-A3XD-01 7 143807159 143807159 C T OR2A2 Missense_Mutation p.L162F 0.07 tolerated(0.19) benign(0.092) TCGA-EB-A3XD-01 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.16 tolerated(0.95) benign(0) TCGA-EB-A3XD-01 7 150325530 150325530 C T GIMAP6 Silent p.G52G 0.15 TCGA-EB-A3XD-01 7 1516525 1516525 G A INTS1 Silent p.F1656F 0.19 TCGA-EB-A3XD-01 7 151878339 151878339 T A KMT2C Silent p.P2202P 0.07 TCGA-EB-A3XD-01 7 157414169 157414169 G A PTPRN2 Silent p.N743N 0.16 TCGA-EB-A3XD-01 7 18066434 18066434 C T PRPS1L1 3'UTR 0.13 TCGA-EB-A3XD-01 7 18066435 18066435 T C PRPS1L1 3'UTR 0.13 TCGA-EB-A3XD-01 7 19015531 19015531 C T HDAC9 Missense_Mutation p.S1042F 0.14 deleterious(0) possibly_damaging(0.509) TCGA-EB-A3XD-01 7 22259514 22259514 C T RAPGEF5 Missense_Mutation p.D170N 0.16 tolerated(0.06) benign(0.125) TCGA-EB-A3XD-01 7 27185241 27185241 G A HOXA6 3'UTR 0.12 TCGA-EB-A3XD-01 7 36327301 36327301 C T EEPD1 Silent p.L410L 0.08 TCGA-EB-A3XD-01 7 44715667 44715667 C T OGDH Silent p.S375S 0.11 TCGA-EB-A3XD-01 7 51096349 51096349 G A COBL Missense_Mutation p.S815L 0.05 tolerated(0.41) benign(0) TCGA-EB-A3XD-01 7 51258589 51258589 C T COBL Missense_Mutation p.E215K 0.11 deleterious(0) probably_damaging(0.968) TCGA-EB-A3XD-01 7 57529114 57529114 G A ZNF716 Missense_Mutation p.R316K 0.16 tolerated(0.54) benign(0.001) TCGA-EB-A3XD-01 7 72419354 72419354 G A POM121 3'UTR 0.11 TCGA-EB-A3XD-01 7 73523279 73523279 C T LIMK1 Silent p.F399F 0.19 TCGA-EB-A3XD-01 7 75066821 75066821 G A POM121C Missense_Mutation p.S151F 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 7 88423665 88423665 C T C7orf62 Missense_Mutation p.D198N 0.07 tolerated(0.1) probably_damaging(0.948) TCGA-EB-A3XD-01 7 92733395 92733395 G A SAMD9 Silent p.F672F 0.10 TCGA-EB-A3XD-01 7 99699026 99699026 G A MCM7 5'UTR 0.11 TCGA-EB-A3XD-01 8 101153451 101153451 G A FBXO43 Missense_Mutation p.S344L 0.11 deleterious(0.01) benign(0.242) TCGA-EB-A3XD-01 8 10396092 10396092 G A PRSS55 Missense_Mutation p.G283E 0.07 tolerated(0.32) possibly_damaging(0.896) TCGA-EB-A3XD-01 8 10480138 10480138 G A RP1L1 Missense_Mutation p.P192S 0.08 probably_damaging(1) TCGA-EB-A3XD-01 8 105503461 105503461 G A LRP12 Missense_Mutation p.P674S 0.07 tolerated(0.09) benign(0.009) TCGA-EB-A3XD-01 8 142517247 142517247 C T MROH5 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) unknown(0) TCGA-EB-A3XD-01 8 144991228 144991228 G A PLEC Missense_Mutation p.S4391F 0.07 probably_damaging(0.986) TCGA-EB-A3XD-01 8 145736915 145736915 C T RECQL4 Missense_Mutation p.V1176M 0.09 deleterious(0) possibly_damaging(0.637) TCGA-EB-A3XD-01 8 22141766 22141766 C T PIWIL2 Nonsense_Mutation p.Q242* 0.09 TCGA-EB-A3XD-01 8 23709002 23709002 C T STC1 Missense_Mutation p.G102R 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 8 30702583 30702583 G A TEX15 Silent p.F1317F 0.07 TCGA-EB-A3XD-01 8 32505250 32505250 C T NRG1 Intron 0.09 TCGA-EB-A3XD-01 8 37732480 37732480 G A RAB11FIP1 Missense_Mutation p.S392F 0.10 deleterious(0) possibly_damaging(0.478) TCGA-EB-A3XD-01 8 38187031 38187031 G A WHSC1L1 Silent p.S482S 0.07 TCGA-EB-A3XD-01 8 38809722 38809722 C T PLEKHA2 Silent p.S175S 0.19 TCGA-EB-A3XD-01 8 57228829 57228829 C T SDR16C5 Missense_Mutation p.M26I 0.11 tolerated(0.26) benign(0.001) TCGA-EB-A3XD-01 8 57354403 57354403 G A PENK Nonsense_Mutation p.Q78* 0.07 TCGA-EB-A3XD-01 8 72942158 72942158 G T TRPA1 Nonsense_Mutation p.S972* 0.13 TCGA-EB-A3XD-01 8 73848257 73848257 G A KCNB2 Missense_Mutation p.E223K 0.03 tolerated(0.07) benign(0.008) TCGA-EB-A3XD-01 8 86389376 86389376 G A CA2 Missense_Mutation p.D179N 0.08 tolerated(0.24) benign(0.043) TCGA-EB-A3XD-01 8 87645093 87645093 G A CNGB3 Nonsense_Mutation p.R403* 0.10 TCGA-EB-A3XD-01 8 95523926 95523926 G A KIAA1429 Silent p.A959A 0.06 TCGA-EB-A3XD-01 9 100692686 100692686 C T HEMGN Missense_Mutation p.E331K 0.10 tolerated(0.1) benign(0.003) TCGA-EB-A3XD-01 9 108118467 108118467 C T SLC44A1 Intron 0.12 TCGA-EB-A3XD-01 9 125288863 125288863 G A OR1N1 Missense_Mutation p.S237F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XD-01 9 125316132 125316132 C A OR1N2 Silent p.L228L 0.13 TCGA-EB-A3XD-01 9 125316133 125316133 C T OR1N2 Silent p.L229L 0.13 TCGA-EB-A3XD-01 9 130828906 130828906 C T NAIF1 Missense_Mutation p.A159T 0.23 tolerated(0.71) benign(0.073) TCGA-EB-A3XD-01 9 134350764 134350764 G A PRRC2B Missense_Mutation p.G1083E 0.15 tolerated(0.08) possibly_damaging(0.611) TCGA-EB-A3XD-01 9 139743825 139743825 C T PHPT1 5'UTR 0.13 TCGA-EB-A3XD-01 9 140693307 140693307 G A EHMT1 Missense_Mutation p.G850S 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 9 35107964 35107964 C T FAM214B Missense_Mutation p.G103D 0.12 tolerated(0.37) benign(0.006) TCGA-EB-A3XD-01 9 77300481 77300481 C T RORB Missense_Mutation p.P443S 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 9 77400934 77400934 G A TRPM6 Silent p.F925F 0.13 TCGA-EB-A3XD-01 X 101909851 101909851 G A GPRASP1 Missense_Mutation p.R337Q 0.04 tolerated(0.56) benign(0.029) TCGA-EB-A3XD-01 X 103267817 103267817 C T H2BFWT Missense_Mutation p.R139Q 0.08 tolerated(1) benign(0.009) TCGA-EB-A3XD-01 X 107849982 107849982 G A COL4A5 Missense_Mutation p.G752E 0.06 unknown(0) TCGA-EB-A3XD-01 X 115303934 115303934 T C AGTR2 Missense_Mutation p.F134S 0.10 deleterious(0) benign(0.367) TCGA-EB-A3XD-01 X 117032999 117032999 C T KLHL13 Missense_Mutation p.D617N 0.04 tolerated(0.21) benign(0.44) TCGA-EB-A3XD-01 X 119565286 119565286 G A LAMP2 Intron 0.07 TCGA-EB-A3XD-01 X 123517535 123517535 C T TENM1 Missense_Mutation p.E2416K 0.06 tolerated(1) benign(0.001) TCGA-EB-A3XD-01 X 123615768 123615768 C T TENM1 Missense_Mutation p.E1255K 0.10 deleterious(0.03) benign(0.191) TCGA-EB-A3XD-01 X 130417102 130417102 G A IGSF1 Silent p.S268S 0.06 TCGA-EB-A3XD-01 X 135593294 135593294 G A HTATSF1 Missense_Mutation p.E464K 0.05 tolerated_low_confidence(0.2) benign(0.005) TCGA-EB-A3XD-01 X 140995253 140995253 C T MAGEC1 Missense_Mutation p.S688F 0.11 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EB-A3XD-01 X 140995659 140995659 G A MAGEC1 Silent p.S823S 0.12 TCGA-EB-A3XD-01 X 14882838 14882838 C T FANCB Silent p.L265L 0.07 TCGA-EB-A3XD-01 X 149638712 149638712 C T MAMLD1 Silent p.L264L 0.06 TCGA-EB-A3XD-01 X 150912638 150912638 G A CNGA2 Missense_Mutation p.D555N 0.09 deleterious(0.01) possibly_damaging(0.529) TCGA-EB-A3XD-01 X 151303222 151303222 G A MAGEA10 Missense_Mutation p.P291S 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A3XD-01 X 151869463 151869463 G A MAGEA6 Silent p.G51G 0.10 TCGA-EB-A3XD-01 X 152770081 152770081 C T BGN Intron 0.07 TCGA-EB-A3XD-01 X 152861594 152861597 TAAA - FAM58A Frame_Shift_Del p.I52Tfs*17 0.09 TCGA-EB-A3XD-01 X 153186238 153186238 G A ARHGAP4 Missense_Mutation p.H175Y 0.09 deleterious(0.03) possibly_damaging(0.833) TCGA-EB-A3XD-01 X 153224030 153224030 G A HCFC1 Missense_Mutation p.S598L 0.09 deleterious(0.03) probably_damaging(0.974) TCGA-EB-A3XD-01 X 155233163 155233163 C T IL9R Silent p.I64I 0.11 TCGA-EB-A3XD-01 X 23411377 23411377 G A PTCHD1 Missense_Mutation p.G581E 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A3XD-01 X 3228032 3228032 C T MXRA5 Missense_Mutation p.E2738K 0.05 deleterious(0.03) possibly_damaging(0.745) TCGA-EB-A3XD-01 X 32466592 32466592 C T DMD Missense_Mutation p.G1256E 0.13 benign(0.139) TCGA-EB-A3XD-01 X 37027232 37027232 C T FAM47C Missense_Mutation p.P250L 0.11 deleterious(0.03) probably_damaging(0.958) TCGA-EB-A3XD-01 X 47082953 47082953 C T CDK16 Silent p.I73I 0.09 TCGA-EB-A3XD-01 X 48566142 48566142 C T SUV39H1 3'UTR 0.19 TCGA-EB-A3XD-01 X 49455912 49455912 C T PAGE1 Missense_Mutation p.G78S 0.07 deleterious(0.04) probably_damaging(0.959) TCGA-EB-A3XD-01 X 53564540 53564540 G A HUWE1 Silent p.S4038S 0.08 TCGA-EB-A3XD-01 X 54496781 54496781 G A FGD1 Missense_Mutation p.P257S 0.14 tolerated(0.22) possibly_damaging(0.641) TCGA-EB-A3XD-01 X 55513971 55513971 C T USP51 Missense_Mutation p.D468N 0.07 deleterious(0.04) probably_damaging(0.989) TCGA-EB-A3XD-01 X 5811248 5811248 G A NLGN4X Silent p.F687F 0.08 TCGA-EB-A3XD-01 X 64737875 64737875 A G LAS1L Missense_Mutation p.V640A 0.11 deleterious(0) benign(0.41) TCGA-EB-A3XD-01 X 69455673 69455673 G A AWAT1 Missense_Mutation p.G62S 0.12 deleterious(0) probably_damaging(0.945) TCGA-EB-A3XD-01 X 69521799 69521799 C T KIF4A Missense_Mutation p.S189F 0.14 deleterious(0.03) benign(0.217) TCGA-EB-A3XD-01 X 75004218 75004218 C T MAGEE2 Silent p.R223R 0.06 TCGA-EB-A3XD-01 X 76937319 76937319 C T ATRX Silent p.K1143K 0.07 TCGA-EB-A3XD-01 X 77380915 77380915 C T PGK1 Silent p.L402L 0.09 TCGA-EB-A3XE-01 11 43941588 43941588 C A ALKBH3 3'UTR 0.30 TCGA-EB-A3XE-01 11 66032657 66032657 G A KLC2 Missense_Mutation p.A429T 0.08 tolerated(1) benign(0) TCGA-EB-A3XE-01 12 11546389 11546389 C T PRB2 Missense_Mutation p.G208E 0.22 deleterious(0.02) unknown(0) TCGA-EB-A3XE-01 12 122674691 122674691 C A LRRC43 Missense_Mutation p.S226Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XE-01 12 48177641 48177641 C T HDAC7 Missense_Mutation p.E987K 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A3XE-01 12 48536634 48536634 G A PFKM Missense_Mutation p.G646S 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A3XE-01 14 92472755 92472755 T A TRIP11 Missense_Mutation p.Q522L 0.35 tolerated(0.35) benign(0.22) TCGA-EB-A3XE-01 17 4337299 4337299 G A SPNS3 Missense_Mutation p.G13R 0.17 tolerated(0.17) possibly_damaging(0.824) TCGA-EB-A3XE-01 1 144994933 144994933 C T PDE4DIP 5'UTR 0.29 TCGA-EB-A3XE-01 1 47746247 47746247 G A STIL Missense_Mutation p.S628F 0.25 tolerated(0.38) possibly_damaging(0.89) TCGA-EB-A3XE-01 1 57602232 57602232 A G DAB1 Missense_Mutation p.F97S 0.10 deleterious(0.01) benign(0.125) TCGA-EB-A3XE-01 20 17950555 17950555 T G MGME1 Missense_Mutation p.F18C 0.17 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-EB-A3XE-01 21 41385035 41385035 G T DSCAM Missense_Mutation p.Q1989K 0.24 deleterious_low_confidence(0.05) benign(0) TCGA-EB-A3XE-01 2 152521048 152521048 C A NEB Missense_Mutation p.K1806N 0.50 benign(0.049) TCGA-EB-A3XE-01 3 167245760 167245760 T C WDR49 Missense_Mutation p.T466A 0.28 tolerated(0.53) benign(0.015) TCGA-EB-A3XE-01 3 51456246 51456246 G A VPRBP Silent p.F678F 0.35 TCGA-EB-A3XE-01 5 160761893 160761893 G A GABRB2 Missense_Mutation p.S233F 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A3XE-01 5 169021224 169021224 C T SPDL1 Missense_Mutation p.R203C 0.13 deleterious(0.03) benign(0.086) TCGA-EB-A3XE-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EB-A3XE-01 7 4965137 4965137 T C MMD2 Missense_Mutation p.H25R 0.27 deleterious(0.01) benign(0.045) TCGA-EB-A3XE-01 7 95216419 95216419 C G PDK4 Missense_Mutation p.G333A 0.52 deleterious(0.01) benign(0.158) TCGA-EB-A3XE-01 8 124221838 124221838 A - FAM83A 3'UTR 0.39 TCGA-EB-A3XE-01 X 48372982 48372982 G A PORCN Nonsense_Mutation p.W305* 0.32 TCGA-EB-A3XF-01 10 105005796 105005796 G A RPEL1 Missense_Mutation p.D15N 0.39 deleterious(0.04) benign(0.024) TCGA-EB-A3XF-01 10 123844332 123844332 G A TACC2 Missense_Mutation p.E773K 0.49 probably_damaging(0.998) TCGA-EB-A3XF-01 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.54 deleterious(0) probably_damaging(0.998) TCGA-EB-A3XF-01 10 47948829 47948829 C T FAM21B Silent p.P1246P 0.66 TCGA-EB-A3XF-01 10 5009132 5009132 C T AKR1C1 Missense_Mutation p.S89F 0.52 tolerated(1) benign(0.002) TCGA-EB-A3XF-01 10 56106231 56106231 C T PCDH15 Missense_Mutation p.G163D 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 10 61815503 61815503 C T ANK3 Missense_Mutation p.M4326I 0.60 benign(0) TCGA-EB-A3XF-01 10 76789152 76789152 G A KAT6B Missense_Mutation p.D1524N 0.65 benign(0.001) TCGA-EB-A3XF-01 10 85970835 85970835 G A CDHR1 Missense_Mutation p.D467N 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 10 87628917 87628917 G A GRID1 Silent p.I267I 0.59 TCGA-EB-A3XF-01 10 94828174 94828174 C T CYP26C1 Missense_Mutation p.P430L 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 10 96541623 96541623 C T CYP2C19 Missense_Mutation p.H230Y 0.54 deleterious(0.02) benign(0.431) TCGA-EB-A3XF-01 11 102195542 102195542 C T BIRC3 Missense_Mutation p.S101F 0.29 tolerated(0.06) benign(0.146) TCGA-EB-A3XF-01 11 102587058 102587058 C T MMP8 Missense_Mutation p.G293R 0.34 tolerated(0.17) possibly_damaging(0.717) TCGA-EB-A3XF-01 11 102820890 102820890 G A MMP13 Missense_Mutation p.S289F 0.33 deleterious(0.03) possibly_damaging(0.602) TCGA-EB-A3XF-01 11 10673682 10673682 C T MRVI1 Missense_Mutation p.E39K 0.23 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-EB-A3XF-01 11 113934707 113934707 C T ZBTB16 Silent p.L229L 0.33 TCGA-EB-A3XF-01 11 117780598 117780598 G A TMPRSS13 Silent p.H344H 0.33 TCGA-EB-A3XF-01 11 1216293 1216293 C G MUC5AC RNA 0.44 TCGA-EB-A3XF-01 11 122931334 122931334 C T HSPA8 Silent p.K126K 0.35 TCGA-EB-A3XF-01 11 123810635 123810635 C T OR4D5 Silent p.F104F 0.34 TCGA-EB-A3XF-01 11 124623839 124623839 G A ESAM Silent p.P292P 0.40 TCGA-EB-A3XF-01 11 130131246 130131246 G A ZBTB44 Missense_Mutation p.P175S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XF-01 11 132016217 132016217 A G NTM Missense_Mutation p.N70S 0.37 deleterious(0) possibly_damaging(0.839) TCGA-EB-A3XF-01 11 20066875 20066875 C T NAV2 Silent p.N1210N 0.27 TCGA-EB-A3XF-01 11 209918 209918 C T RIC8A Missense_Mutation p.S215F 0.31 tolerated(0.05) benign(0.123) TCGA-EB-A3XF-01 11 31805151 31805151 C T ELP4 3'UTR 0.53 TCGA-EB-A3XF-01 11 3661351 3661351 G A ART5 Missense_Mutation p.S103L 0.31 deleterious(0.01) possibly_damaging(0.83) TCGA-EB-A3XF-01 11 45924119 45924119 C T MAPK8IP1 Silent p.I267I 0.20 TCGA-EB-A3XF-01 11 48238508 48238508 C T OR4B1 Silent p.I49I 0.36 TCGA-EB-A3XF-01 11 48347078 48347078 C T OR4C3 Missense_Mutation p.P196S 0.10 deleterious(0.02) benign(0.201) TCGA-EB-A3XF-01 11 55579692 55579692 C T OR5L1 Silent p.V250V 0.36 TCGA-EB-A3XF-01 11 55658978 55658978 G A TRIM51 Missense_Mutation p.G410E 0.41 deleterious(0) possibly_damaging(0.739) TCGA-EB-A3XF-01 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.32 TCGA-EB-A3XF-01 11 56019991 56019991 G A OR5T3 Missense_Mutation p.V106I 0.43 tolerated(0.11) benign(0.066) TCGA-EB-A3XF-01 11 56020107 56020107 C T OR5T3 Silent p.L144L 0.37 TCGA-EB-A3XF-01 11 56409012 56409012 C T OR5AP2 Missense_Mutation p.D302N 0.37 deleterious(0.01) benign(0) TCGA-EB-A3XF-01 11 61508748 61508748 C T DAGLA Missense_Mutation p.P700S 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-EB-A3XF-01 11 6244953 6244953 G A FAM160A2 Nonsense_Mutation p.R222* 0.38 TCGA-EB-A3XF-01 11 6640113 6640113 C T TPP1 Silent p.A41A 0.31 TCGA-EB-A3XF-01 11 67269389 67269389 A G PITPNM1 Missense_Mutation p.V195A 0.38 deleterious(0) possibly_damaging(0.569) TCGA-EB-A3XF-01 11 6789838 6789838 G A OR2AG2 Silent p.F117F 0.41 TCGA-EB-A3XF-01 11 68671264 68671264 G A MRPL21 Silent p.S5S 0.47 TCGA-EB-A3XF-01 11 78413445 78413445 G A TENM4 Missense_Mutation p.H1405Y 0.33 deleterious(0) benign(0.007) TCGA-EB-A3XF-01 12 100904735 100904735 G A NR1H4 Missense_Mutation p.E97K 0.39 tolerated(0.07) possibly_damaging(0.83) TCGA-EB-A3XF-01 12 101333101 101333101 G A ANO4 Missense_Mutation p.D22N 0.32 deleterious_low_confidence(0.04) benign(0.009) TCGA-EB-A3XF-01 12 108589759 108589759 G A WSCD2 Silent p.A50A 0.30 TCGA-EB-A3XF-01 12 11061756 11061756 G A TAS2R13 Missense_Mutation p.L48F 0.30 deleterious(0.05) possibly_damaging(0.744) TCGA-EB-A3XF-01 12 111772438 111772438 C T CUX2 Silent p.I1040I 0.45 TCGA-EB-A3XF-01 12 112654962 112654962 G C HECTD4 Missense_Mutation p.P2225R 0.18 benign(0.191) TCGA-EB-A3XF-01 12 112672931 112672931 G A HECTD4 Silent p.I1809I 0.23 TCGA-EB-A3XF-01 12 122625513 122625513 A G MLXIP Missense_Mutation p.I841V 0.35 deleterious(0) benign(0.143) TCGA-EB-A3XF-01 12 124297969 124297969 C T DNAH10 Missense_Mutation p.P1017S 0.30 benign(0.001) TCGA-EB-A3XF-01 12 128899602 128899602 G A TMEM132C Silent p.R137R 0.53 TCGA-EB-A3XF-01 12 25261050 25261050 C T LRMP 3'UTR 0.33 TCGA-EB-A3XF-01 12 43750374 43750374 A T ADAMTS20 Missense_Mutation p.N1852K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 12 44917257 44917257 C A NELL2 Missense_Mutation p.E655D 0.51 deleterious(0.02) possibly_damaging(0.869) TCGA-EB-A3XF-01 12 49212708 49212708 C T CACNB3 5'UTR 0.29 TCGA-EB-A3XF-01 12 52377937 52377937 C T ACVR1B Silent p.I363I 0.32 TCGA-EB-A3XF-01 12 52842677 52842677 G A KRT6B Silent p.I384I 0.37 TCGA-EB-A3XF-01 12 53468916 53468916 A G SPRYD3 Silent p.L112L 0.32 TCGA-EB-A3XF-01 12 53703415 53703415 G A AAAS Silent p.L260L 0.41 TCGA-EB-A3XF-01 12 53928382 53928382 G A ATF7 Missense_Mutation p.S155F 0.45 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XF-01 12 56030935 56030935 C T OR10P1 Missense_Mutation p.S87F 0.33 tolerated(0.09) benign(0.027) TCGA-EB-A3XF-01 12 56031341 56031341 C T OR10P1 Silent p.I222I 0.33 TCGA-EB-A3XF-01 12 56222427 56222427 G A DNAJC14 Missense_Mutation p.P6S 0.50 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EB-A3XF-01 12 57111674 57111674 G A NACA Intron 0.29 TCGA-EB-A3XF-01 12 69080743 69080743 G A NUP107 5'UTR 0.45 TCGA-EB-A3XF-01 12 69656328 69656328 C T CPSF6 Missense_Mutation p.R549C 0.62 deleterious_low_confidence(0) unknown(0) TCGA-EB-A3XF-01 12 70954580 70954580 C T PTPRB Missense_Mutation p.E1435K 0.25 deleterious(0.04) benign(0.381) TCGA-EB-A3XF-01 12 70974880 70974880 G A PTPRB Silent p.S838S 0.27 TCGA-EB-A3XF-01 12 71095086 71095086 G A PTPRR Missense_Mutation p.S342F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 12 7169913 7169913 G A C1S Missense_Mutation p.G47E 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 12 80672875 80672875 G A OTOGL Missense_Mutation p.D944N 0.35 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 12 95694306 95694306 C T VEZT Missense_Mutation p.P733S 0.35 tolerated(0.3) benign(0.005) TCGA-EB-A3XF-01 12 95694307 95694307 C T VEZT Missense_Mutation p.P733L 0.35 deleterious(0.01) benign(0.14) TCGA-EB-A3XF-01 12 96394717 96394717 G A LTA4H 3'UTR 0.33 TCGA-EB-A3XF-01 13 110822023 110822023 G A COL4A1 Missense_Mutation p.P1277S 0.48 probably_damaging(0.948) TCGA-EB-A3XF-01 13 111944562 111944562 G A ARHGEF7 Silent p.L765L 0.33 TCGA-EB-A3XF-01 13 113801724 113801724 T A F10 Missense_Mutation p.F260Y 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 13 115091186 115091186 C T CHAMP1 Silent p.N623N 0.34 TCGA-EB-A3XF-01 13 115091187 115091187 C T CHAMP1 Nonsense_Mutation p.Q624* 0.35 TCGA-EB-A3XF-01 13 32332521 32332521 G A RXFP2 Missense_Mutation p.G74E 0.36 deleterious(0.03) possibly_damaging(0.615) TCGA-EB-A3XF-01 13 32811801 32811801 C T FRY Silent p.S2032S 0.24 TCGA-EB-A3XF-01 13 45149708 45149708 G A TSC22D1 Missense_Mutation p.P168L 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XF-01 13 52034998 52034998 C T RPS4XP16 RNA 0.29 TCGA-EB-A3XF-01 14 100387179 100387179 G A EML1 Missense_Mutation p.G644E 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 14 101348269 101348269 C T RTL1 Missense_Mutation p.D953N 0.39 tolerated(0.41) probably_damaging(0.999) TCGA-EB-A3XF-01 14 102446168 102446168 C T DYNC1H1 Missense_Mutation p.P211S 0.32 benign(0.021) TCGA-EB-A3XF-01 14 20345093 20345093 G A OR4K2 Missense_Mutation p.V223I 0.17 tolerated(0.45) benign(0.032) TCGA-EB-A3XF-01 14 20444324 20444324 C T OR4K15 Missense_Mutation p.T216I 0.31 tolerated(0.05) benign(0.168) TCGA-EB-A3XF-01 14 22102855 22102855 G A OR10G2 Silent p.L48L 0.38 TCGA-EB-A3XF-01 14 22363122 22363122 G A TRAV8-4 Missense_Mutation p.E85K 0.38 tolerated(0.09) benign(0.188) TCGA-EB-A3XF-01 14 22476342 22476342 C T TRAV19 Missense_Mutation p.S91F 0.45 deleterious(0) possibly_damaging(0.6) TCGA-EB-A3XF-01 14 24798657 24798657 G A ADCY4 Missense_Mutation p.P434S 0.43 tolerated(0.28) benign(0.144) TCGA-EB-A3XF-01 14 45644574 45644574 G A FANCM Missense_Mutation p.G873S 0.31 tolerated(0.92) benign(0.001) TCGA-EB-A3XF-01 14 45644575 45644575 G C FANCM Missense_Mutation p.G873A 0.30 tolerated(0.83) benign(0.001) TCGA-EB-A3XF-01 14 50088518 50088518 C T MGAT2 Missense_Mutation p.P178S 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 14 64537396 64537396 C T SYNE2 Nonsense_Mutation p.Q3489* 0.46 TCGA-EB-A3XF-01 14 64989987 64989987 C T ZBTB1 Nonsense_Mutation p.Q589* 0.41 TCGA-EB-A3XF-01 14 70989510 70989510 G A ADAM20 Silent p.N705N 0.35 TCGA-EB-A3XF-01 14 71443893 71443893 C T PCNX Missense_Mutation p.P280L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.536) TCGA-EB-A3XF-01 14 74185963 74185963 A - ELMSAN1 3'UTR 0.44 TCGA-EB-A3XF-01 14 77948662 77948662 C T ISM2 Intron 0.28 TCGA-EB-A3XF-01 14 88892695 88892695 C T SPATA7 Silent p.S164S 0.40 TCGA-EB-A3XF-01 14 94158280 94158280 C T UNC79 Silent p.A2348A 0.33 TCGA-EB-A3XF-01 14 95029946 95029946 G A SERPINA4 Missense_Mutation p.G43S 0.47 tolerated(0.25) possibly_damaging(0.454) TCGA-EB-A3XF-01 14 95080859 95080859 C T SERPINA3 Silent p.S27S 0.32 TCGA-EB-A3XF-01 15 22382680 22382680 G A OR4N4 Missense_Mutation p.D70N 0.28 deleterious(0.01) possibly_damaging(0.839) TCGA-EB-A3XF-01 15 39910123 39910123 C T FSIP1 Missense_Mutation p.M504I 0.68 tolerated(0.27) benign(0.101) TCGA-EB-A3XF-01 15 42434846 42434846 G A PLA2G4F Missense_Mutation p.P737S 0.61 tolerated(0.38) benign(0.006) TCGA-EB-A3XF-01 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.15 tolerated(0.08) probably_damaging(0.913) TCGA-EB-A3XF-01 15 75499306 75499306 C T C15orf39 Missense_Mutation p.P306L 0.37 deleterious(0) possibly_damaging(0.851) TCGA-EB-A3XF-01 15 81295208 81295208 C T MESDC1 Missense_Mutation p.A199V 0.38 tolerated(0.42) benign(0.001) TCGA-EB-A3XF-01 15 81627102 81627102 G A TMC3 Silent p.L806L 0.38 TCGA-EB-A3XF-01 15 89399942 89399942 C T ACAN Missense_Mutation p.P1376S 0.22 tolerated(0.21) possibly_damaging(0.562) TCGA-EB-A3XF-01 15 90129000 90129000 C T TICRR Missense_Mutation p.S413F 0.35 deleterious(0) probably_damaging(0.985) TCGA-EB-A3XF-01 16 16276740 16276740 G A ABCC6 Missense_Mutation p.P664L 0.26 deleterious(0.04) benign(0.045) TCGA-EB-A3XF-01 16 17211736 17211736 C T XYLT1 Missense_Mutation p.G775E 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XF-01 16 19474601 19474601 G A TMC5 Splice_Site p.X383_splice 0.28 TCGA-EB-A3XF-01 16 2168072 2168072 G A PKD1 Silent p.F307F 0.44 TCGA-EB-A3XF-01 16 24196460 24196460 C T PRKCB Missense_Mutation p.S521F 0.33 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XF-01 16 29825173 29825173 G A PRRT2 Silent p.R266R 0.41 TCGA-EB-A3XF-01 16 30680646 30680646 C T FBRS Missense_Mutation p.R875C 0.37 benign(0.009) TCGA-EB-A3XF-01 16 30748499 30748499 C T SRCAP Missense_Mutation p.R2380W 0.42 probably_damaging(0.973) TCGA-EB-A3XF-01 16 4242610 4242610 G A SRL Silent p.I322I 0.31 TCGA-EB-A3XF-01 16 47730390 47730390 C T PHKB Silent p.I998I 0.57 TCGA-EB-A3XF-01 16 57159853 57159853 G A CPNE2 Missense_Mutation p.E337K 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-EB-A3XF-01 16 57559838 57559838 G A CCDC102A Nonsense_Mutation p.Q263* 0.16 TCGA-EB-A3XF-01 16 61747829 61747829 C T CDH8 Missense_Mutation p.D524N 0.51 tolerated(0.13) benign(0.022) TCGA-EB-A3XF-01 16 69333599 69333599 C T SNTB2 Silent p.P484P 0.20 TCGA-EB-A3XF-01 17 10322317 10322317 G A MYH8 Missense_Mutation p.P81S 0.40 tolerated(0.26) benign(0.002) TCGA-EB-A3XF-01 17 10402067 10402067 C T MYH1 Missense_Mutation p.E1353K 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A3XF-01 17 10419525 10419525 C T MYH1 Nonsense_Mutation p.W113* 0.50 TCGA-EB-A3XF-01 17 10435045 10435045 C T MYH2 Missense_Mutation p.E868K 0.30 tolerated(0.38) benign(0.015) TCGA-EB-A3XF-01 17 1562680 1562680 G A PRPF8 Silent p.I1703I 0.38 TCGA-EB-A3XF-01 17 18544609 18544609 G A TBC1D28 Silent p.I19I 0.33 TCGA-EB-A3XF-01 17 19318082 19318082 G A RNF112 Splice_Site p.X337_splice 0.27 TCGA-EB-A3XF-01 17 19319186 19319186 G A RNF112 Missense_Mutation p.A532T 0.23 tolerated(0.07) probably_damaging(0.94) TCGA-EB-A3XF-01 17 19619821 19619821 G A SLC47A2 Silent p.C16C 0.33 TCGA-EB-A3XF-01 17 21205466 21205466 G A MAP2K3 Nonsense_Mutation p.W137* 0.11 TCGA-EB-A3XF-01 17 27959127 27959127 G A SSH2 Missense_Mutation p.P1002S 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.493) TCGA-EB-A3XF-01 17 2966046 2966046 G A OR1D5 Missense_Mutation p.P286S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 17 2996169 2996169 C T OR1D2 Missense_Mutation p.G41E 0.38 deleterious(0.01) benign(0.125) TCGA-EB-A3XF-01 17 3181486 3181486 G A OR3A2 Silent p.S248S 0.41 TCGA-EB-A3XF-01 17 32956214 32956214 C T TMEM132E Silent p.P353P 0.29 TCGA-EB-A3XF-01 17 37188206 37188206 C T CTD-2206N4.2 5'Flank 0.34 TCGA-EB-A3XF-01 17 38638424 38638424 G A TNS4 Silent p.I543I 0.43 TCGA-EB-A3XF-01 17 39140403 39140403 G A KRT40 Silent p.S41S 0.36 TCGA-EB-A3XF-01 17 42478238 42478238 T A GPATCH8 Nonsense_Mutation p.K403* 0.35 TCGA-EB-A3XF-01 17 45363782 45363782 C T ITGB3 Silent p.V257V 0.44 TCGA-EB-A3XF-01 17 47243551 47243551 C T B4GALNT2 Missense_Mutation p.L404F 0.38 tolerated(0.09) benign(0.327) TCGA-EB-A3XF-01 17 47782504 47782507 GCCG A SLC35B1 In_Frame_Del p.G170del 0.27 TCGA-EB-A3XF-01 17 4805156 4805156 C T C17orf107 3'UTR 0.40 TCGA-EB-A3XF-01 17 48628487 48628487 C T SPATA20 Silent p.L504L 0.47 TCGA-EB-A3XF-01 17 48917222 48917222 C T WFIKKN2 Silent p.T191T 0.35 TCGA-EB-A3XF-01 17 56435093 56435093 G A RNF43 Missense_Mutation p.P682S 0.36 tolerated_low_confidence(0.1) probably_damaging(0.959) TCGA-EB-A3XF-01 17 6386961 6386961 G A PITPNM3 Missense_Mutation p.H155Y 0.25 deleterious(0.04) benign(0.065) TCGA-EB-A3XF-01 17 72436023 72436023 C T GPRC5C Silent p.N81N 0.43 TCGA-EB-A3XF-01 17 76501515 76501515 G A DNAH17 Silent p.L1602L 0.45 TCGA-EB-A3XF-01 17 7668868 7668868 G A DNAH2 Missense_Mutation p.D1166N 0.40 benign(0.119) TCGA-EB-A3XF-01 17 7912824 7912824 G A GUCY2D Missense_Mutation p.G557R 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 18 3879638 3879638 G A DLGAP1 Missense_Mutation p.S144L 0.54 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XF-01 18 44555140 44555140 G A TCEB3C Silent p.V358V 0.05 TCGA-EB-A3XF-01 18 47406790 47406790 C T MYO5B Silent p.L1027L 0.32 TCGA-EB-A3XF-01 18 61328443 61328443 G A SERPINB3 Missense_Mutation p.S3L 0.23 tolerated(0.16) benign(0.068) TCGA-EB-A3XF-01 19 10478756 10478756 G A TYK2 Missense_Mutation p.A147V 0.39 deleterious(0.02) possibly_damaging(0.704) TCGA-EB-A3XF-01 19 11565659 11565659 G A ELAVL3 Silent p.I262I 0.36 TCGA-EB-A3XF-01 19 12461104 12461104 G A ZNF442 Missense_Mutation p.P432L 0.41 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XF-01 19 14591461 14591461 C A GIPC1 Nonsense_Mutation p.E140* 0.42 TCGA-EB-A3XF-01 19 1487193 1487193 C T PCSK4 Missense_Mutation p.V268M 0.34 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XF-01 19 15483068 15483068 G A AKAP8 Silent p.L318L 0.41 TCGA-EB-A3XF-01 19 15507985 15507985 G A AKAP8L Silent p.T504T 0.33 TCGA-EB-A3XF-01 19 1615722 1615722 C T TCF3 Missense_Mutation p.E517K 0.33 tolerated(0.14) benign(0.22) TCGA-EB-A3XF-01 19 17212838 17212838 G T MYO9B Missense_Mutation p.G104V 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 19 19738055 19738055 G A LPAR2 Silent p.I13I 0.38 TCGA-EB-A3XF-01 19 3530836 3530836 C T FZR1 Missense_Mutation p.S234F 0.28 deleterious(0) probably_damaging(0.98) TCGA-EB-A3XF-01 19 36166856 36166856 G A UPK1A Missense_Mutation p.G195R 0.28 tolerated(0.44) benign(0.024) TCGA-EB-A3XF-01 19 36380805 36380805 G A NFKBID Missense_Mutation p.P292L 0.35 tolerated(0.1) benign(0.005) TCGA-EB-A3XF-01 19 36380806 36380806 G A NFKBID Missense_Mutation p.P292S 0.36 deleterious(0.03) benign(0.316) TCGA-EB-A3XF-01 19 37488226 37488226 C T ZNF568 Missense_Mutation p.R481C 0.35 tolerated(0.13) probably_damaging(0.993) TCGA-EB-A3XF-01 19 38572878 38572878 T C SIPA1L3 Missense_Mutation p.F225L 0.20 tolerated(0.05) benign(0.02) TCGA-EB-A3XF-01 19 39760185 39760185 G A IFNL2 Missense_Mutation p.E110K 0.34 tolerated(0.71) benign(0.024) TCGA-EB-A3XF-01 19 40419772 40419772 G A FCGBP Silent p.P1074P 0.32 TCGA-EB-A3XF-01 19 40419773 40419773 G T FCGBP Missense_Mutation p.P1074H 0.31 probably_damaging(0.999) TCGA-EB-A3XF-01 19 40521709 40521709 G C ZNF546 3'UTR 0.31 TCGA-EB-A3XF-01 19 41622398 41622398 G T CYP2F1 Silent p.L70L 0.34 TCGA-EB-A3XF-01 19 4171136 4171136 C T CREB3L3 Silent p.S313S 0.24 TCGA-EB-A3XF-01 19 4306197 4306197 G A FSD1 Silent p.A38A 0.34 TCGA-EB-A3XF-01 19 46351038 46351038 G A SYMPK Silent p.I216I 0.39 TCGA-EB-A3XF-01 19 48343042 48343042 C T CRX Missense_Mutation p.P240S 0.42 tolerated(0.73) benign(0.206) TCGA-EB-A3XF-01 19 50029495 50029495 C T FCGRT 3'UTR 0.32 TCGA-EB-A3XF-01 19 50214030 50214030 C T CPT1C Silent p.F594F 0.20 TCGA-EB-A3XF-01 19 51021683 51021683 C T LRRC4B Silent p.Q429Q 0.35 TCGA-EB-A3XF-01 19 53056775 53056775 C T ZNF808 Silent p.I202I 0.36 TCGA-EB-A3XF-01 19 53912520 53912520 C T ZNF765 3'UTR 0.27 TCGA-EB-A3XF-01 19 54301522 54301522 G A NLRP12 Missense_Mutation p.P968S 0.38 deleterious(0.02) benign(0.081) TCGA-EB-A3XF-01 19 55142481 55142481 G A LILRB1 5'UTR 0.41 TCGA-EB-A3XF-01 19 55481495 55481495 G A NLRP2 Missense_Mutation p.E38K 0.37 tolerated(0.62) possibly_damaging(0.734) TCGA-EB-A3XF-01 19 56539610 56539610 C T NLRP5 Silent p.L671L 0.35 TCGA-EB-A3XF-01 19 57133236 57133236 C T ZNF71 Missense_Mutation p.A194V 0.34 deleterious(0) probably_damaging(0.996) TCGA-EB-A3XF-01 19 57334169 57334169 C T PEG3 Missense_Mutation p.D173N 0.32 tolerated(0.08) benign(0.075) TCGA-EB-A3XF-01 19 57646255 57646255 C T ZIM3 3'UTR 0.31 TCGA-EB-A3XF-01 19 58117725 58117725 C T ZNF530 Missense_Mutation p.R278C 0.43 tolerated(0.3) benign(0.001) TCGA-EB-A3XF-01 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.51 deleterious(0) possibly_damaging(0.891) TCGA-EB-A3XF-01 19 6913720 6913720 C T EMR1 Silent p.F393F 0.38 TCGA-EB-A3XF-01 19 7676858 7676858 G A CAMSAP3 Silent p.K520K 0.30 TCGA-EB-A3XF-01 19 8131142 8131142 C T FBN3 Silent p.V2697V 0.36 TCGA-EB-A3XF-01 19 9083098 9083098 G A MUC16 Missense_Mutation p.S2906F 0.38 unknown(0) TCGA-EB-A3XF-01 19 9086616 9086616 G A MUC16 Silent p.S1733S 0.39 TCGA-EB-A3XF-01 19 9581118 9581118 T C ZNF560 Missense_Mutation p.N133S 0.39 tolerated(0.18) possibly_damaging(0.874) TCGA-EB-A3XF-01 19 9921757 9921757 G A FBXL12 Missense_Mutation p.P266S 0.51 tolerated(0.4) benign(0.002) TCGA-EB-A3XF-01 1 10434438 10434438 C T KIF1B Missense_Mutation p.P1625S 0.33 tolerated(0.08) benign(0.185) TCGA-EB-A3XF-01 1 113636988 113636988 C T LRIG2 Silent p.T181T 0.25 TCGA-EB-A3XF-01 1 114372220 114372220 C T PTPN22 Silent p.R748R 0.52 TCGA-EB-A3XF-01 1 115222915 115222915 C T AMPD1 Missense_Mutation p.M277I 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A3XF-01 1 115489880 115489880 C T SYCP1 Missense_Mutation p.S754F 0.33 deleterious(0) benign(0.089) TCGA-EB-A3XF-01 1 115523998 115523998 G A SYCP1 Nonsense_Mutation p.W808* 0.29 TCGA-EB-A3XF-01 1 144880851 144880851 G A PDE4DIP Silent p.S1259S 0.14 TCGA-EB-A3XF-01 1 146658627 146658627 C T FMO5 Missense_Mutation p.R485Q 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A3XF-01 1 152059700 152059700 C T TCHHL1 Missense_Mutation p.G153E 0.38 tolerated(1) benign(0.047) TCGA-EB-A3XF-01 1 153346191 153346191 C T S100A12 3'UTR 0.38 TCGA-EB-A3XF-01 1 155209525 155209525 C G GBA Missense_Mutation p.Q112H 0.31 tolerated(0.12) benign(0.001) TCGA-EB-A3XF-01 1 155746198 155746198 G A GON4L Silent p.T722T 0.55 TCGA-EB-A3XF-01 1 155784129 155784129 A G GON4L Silent p.L425L 0.27 TCGA-EB-A3XF-01 1 156124379 156124379 C T SEMA4A Missense_Mutation p.P4S 0.21 tolerated_low_confidence(0.13) benign(0.029) TCGA-EB-A3XF-01 1 158576534 158576534 C T OR10Z1 Silent p.F102F 0.36 TCGA-EB-A3XF-01 1 158592916 158592916 C T SPTA1 Missense_Mutation p.D1993N 0.33 deleterious(0.03) benign(0.059) TCGA-EB-A3XF-01 1 158632735 158632735 C T SPTA1 Missense_Mutation p.D741N 0.23 tolerated(0.07) benign(0.032) TCGA-EB-A3XF-01 1 159802912 159802912 A G SLAMF8 Missense_Mutation p.N205S 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 1 159900142 159900142 C T IGSF9 Missense_Mutation p.R634K 0.37 deleterious(0.05) benign(0.029) TCGA-EB-A3XF-01 1 160098530 160098530 C T ATP1A2 Missense_Mutation p.S369F 0.34 deleterious(0) probably_damaging(0.988) TCGA-EB-A3XF-01 1 160769865 160769865 C T LY9 Silent p.F149F 0.32 TCGA-EB-A3XF-01 1 162381825 162381825 C T SH2D1B 5'UTR 0.34 TCGA-EB-A3XF-01 1 16525004 16525004 G A ARHGEF19 3'UTR 0.46 TCGA-EB-A3XF-01 1 167097407 167097407 G A DUSP27 Silent p.R1013R 0.31 TCGA-EB-A3XF-01 1 167097408 167097408 G A DUSP27 Missense_Mutation p.E1014K 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-EB-A3XF-01 1 16767167 16767167 G A NECAP2 5'Flank 0.47 TCGA-EB-A3XF-01 1 171077327 171077327 G A FMO3 Missense_Mutation p.D198N 0.26 deleterious(0.02) probably_damaging(1) TCGA-EB-A3XF-01 1 173616054 173616054 C T ANKRD45 Missense_Mutation p.E143K 0.38 tolerated(0.57) benign(0.005) TCGA-EB-A3XF-01 1 197447110 197447110 G A CRB1 3'UTR 0.36 TCGA-EB-A3XF-01 1 202103476 202103476 G A ARL8A 3'UTR 0.52 TCGA-EB-A3XF-01 1 202103477 202103477 G A ARL8A 3'UTR 0.50 TCGA-EB-A3XF-01 1 205632615 205632615 G A SLC45A3 Missense_Mutation p.L102F 0.32 tolerated(0.16) possibly_damaging(0.457) TCGA-EB-A3XF-01 1 205899127 205899127 T G SLC26A9 Missense_Mutation p.I204L 0.37 deleterious(0.02) benign(0.363) TCGA-EB-A3XF-01 1 208224727 208224727 G A PLXNA2 Missense_Mutation p.S1012F 0.35 deleterious(0.05) benign(0.053) TCGA-EB-A3XF-01 1 212241963 212241963 T A DTL Missense_Mutation p.D280E 0.25 deleterious(0) probably_damaging(0.978) TCGA-EB-A3XF-01 1 212532071 212532071 G A PPP2R5A Missense_Mutation p.E424K 0.38 deleterious(0.01) probably_damaging(0.926) TCGA-EB-A3XF-01 1 215792296 215792296 C T KCTD3 Missense_Mutation p.S544F 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3XF-01 1 218519991 218519991 C T TGFB2 5'UTR 0.38 TCGA-EB-A3XF-01 1 223568258 223568258 G A C1orf65 Missense_Mutation p.E481K 0.34 deleterious(0.01) possibly_damaging(0.592) TCGA-EB-A3XF-01 1 228247952 228247952 C A WNT3A 3'UTR 0.36 TCGA-EB-A3XF-01 1 228495135 228495135 G C OBSCN Silent p.T5080T 0.36 TCGA-EB-A3XF-01 1 237758892 237758892 G A RYR2 Missense_Mutation p.V1511M 0.35 probably_damaging(0.973) TCGA-EB-A3XF-01 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.34 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XF-01 1 248845138 248845138 G A OR14I1 Silent p.V156V 0.24 TCGA-EB-A3XF-01 1 26514781 26514781 C T CNKSR1 Missense_Mutation p.P504L 0.26 tolerated(0.29) benign(0.007) TCGA-EB-A3XF-01 1 26751942 26751942 G A LIN28A Missense_Mutation p.G126E 0.34 deleterious(0) possibly_damaging(0.657) TCGA-EB-A3XF-01 1 32259423 32259423 G A SPOCD1 Missense_Mutation p.A820V 0.35 tolerated(0.29) benign(0.005) TCGA-EB-A3XF-01 1 33954165 33954165 C T ZSCAN20 Missense_Mutation p.S173F 0.27 tolerated(0.15) benign(0.006) TCGA-EB-A3XF-01 1 35370203 35370203 C T DLGAP3 Nonsense_Mutation p.W261* 0.36 TCGA-EB-A3XF-01 1 39823056 39823056 C T MACF1 Nonsense_Mutation p.Q1750* 0.39 TCGA-EB-A3XF-01 1 39904963 39904963 G A MACF1 Missense_Mutation p.D4021N 0.39 benign(0.05) TCGA-EB-A3XF-01 1 41976146 41976146 C T HIVEP3 Silent p.E2399E 0.35 TCGA-EB-A3XF-01 1 44083579 44083579 C T PTPRF Silent p.S1456S 0.25 TCGA-EB-A3XF-01 1 46034249 46034249 C T AKR1A1 Silent p.S215S 0.39 TCGA-EB-A3XF-01 1 46977981 46977981 C A DMBX1 Missense_Mutation p.Q317K 0.41 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EB-A3XF-01 1 47284535 47284535 G A CYP4B1 3'UTR 0.26 TCGA-EB-A3XF-01 1 55524260 55524260 G A PCSK9 Silent p.E481E 0.43 TCGA-EB-A3XF-01 1 57157079 57157079 C T PRKAA2 Silent p.I83I 0.60 TCGA-EB-A3XF-01 1 57171779 57171779 C T PRKAA2 Silent p.Y436Y 0.24 TCGA-EB-A3XF-01 1 65871563 65871563 C T DNAJC6 Silent p.S746S 0.39 TCGA-EB-A3XF-01 1 82433875 82433875 G A LPHN2 Missense_Mutation p.E822K 0.25 tolerated(0.06) benign(0.301) TCGA-EB-A3XF-01 1 87045037 87045037 G A CLCA4 Missense_Mutation p.G708E 0.42 deleterious(0) benign(0.417) TCGA-EB-A3XF-01 1 87100124 87100124 C T RP4-651E10.4 Intron 0.26 TCGA-EB-A3XF-01 20 1961235 1961235 C T PDYN Missense_Mutation p.D167N 0.37 tolerated(0.26) benign(0.007) TCGA-EB-A3XF-01 20 24988340 24988340 G A ACSS1 3'UTR 0.32 TCGA-EB-A3XF-01 20 32194798 32194798 C T CBFA2T2 Missense_Mutation p.S33L 0.36 deleterious(0) probably_damaging(0.991) TCGA-EB-A3XF-01 20 32878609 32878609 G A AHCY Silent p.L232L 0.37 TCGA-EB-A3XF-01 20 36766675 36766675 C T TGM2 Missense_Mutation p.M485I 0.35 tolerated(0.65) benign(0.005) TCGA-EB-A3XF-01 20 3782981 3782981 C T CDC25B Silent p.L384L 0.30 TCGA-EB-A3XF-01 20 42907841 42907841 G A GDAP1L1 Silent p.K335K 0.41 TCGA-EB-A3XF-01 20 43580559 43580559 C T TOMM34 Silent p.Q155Q 0.37 TCGA-EB-A3XF-01 20 46266468 46266468 C T NCOA3 Missense_Mutation p.S818F 0.54 tolerated(0.05) benign(0.418) TCGA-EB-A3XF-01 20 51870822 51870822 G A TSHZ2 Silent p.L275L 0.48 TCGA-EB-A3XF-01 20 51871330 51871330 C T TSHZ2 Missense_Mutation p.P445S 0.38 tolerated(0.18) benign(0.007) TCGA-EB-A3XF-01 20 5294791 5294791 G A PROKR2 Silent p.I75I 0.32 TCGA-EB-A3XF-01 20 55211758 55211758 C T TFAP2C Missense_Mutation p.L339F 0.30 deleterious(0.03) probably_damaging(1) TCGA-EB-A3XF-01 20 57428975 57428975 C T GNAS Missense_Mutation p.P219S 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A3XF-01 21 10862625 10862625 G A IGHV1OR21-1 Missense_Mutation p.D2N 0.10 deleterious(0.02) possibly_damaging(0.827) TCGA-EB-A3XF-01 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.40 TCGA-EB-A3XF-01 21 34134610 34134610 G A PAXBP1 Missense_Mutation p.A223V 0.50 deleterious(0.02) possibly_damaging(0.873) TCGA-EB-A3XF-01 21 35751738 35751738 C T SMIM11 5'UTR 0.27 TCGA-EB-A3XF-01 21 42694977 42694977 G A FAM3B Silent p.E49E 0.31 TCGA-EB-A3XF-01 21 44837467 44837467 G A SIK1 Silent p.S644S 0.37 TCGA-EB-A3XF-01 21 46912627 46912627 C T COL18A1 Silent p.P918P 0.32 TCGA-EB-A3XF-01 22 32756141 32756141 G A RFPL3S 3'UTR 0.21 TCGA-EB-A3XF-01 22 38318096 38318096 C T MICALL1 Silent p.T229T 0.29 TCGA-EB-A3XF-01 22 44235875 44235875 G A SULT4A1 Missense_Mutation p.H111Y 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 22 50678773 50678773 C T TUBGCP6 Nonsense_Mutation p.W255* 0.40 TCGA-EB-A3XF-01 2 105889407 105889407 G A TGFBRAP1 Missense_Mutation p.S626F 0.38 deleterious(0.05) benign(0.192) TCGA-EB-A3XF-01 2 112767556 112767556 C T MERTK Silent p.I664I 0.36 TCGA-EB-A3XF-01 2 133539624 133539624 T A NCKAP5 Missense_Mutation p.N1587I 0.52 tolerated(0.16) possibly_damaging(0.51) TCGA-EB-A3XF-01 2 136872492 136872492 C T CXCR4 Missense_Mutation p.G340R 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A3XF-01 2 138169277 138169277 G A THSD7B Missense_Mutation p.G932R 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-EB-A3XF-01 2 141607703 141607703 T G LRP1B Missense_Mutation p.N1636T 0.17 possibly_damaging(0.728) TCGA-EB-A3XF-01 2 1437288 1437288 G A TPO Silent p.V86V 0.36 TCGA-EB-A3XF-01 2 159672219 159672219 C T DAPL1 Silent p.L70L 0.27 TCGA-EB-A3XF-01 2 167129193 167129193 C T SCN9A Missense_Mutation p.E1012K 0.38 tolerated(0.11) benign(0.334) TCGA-EB-A3XF-01 2 167145061 167145061 C T SCN9A Silent p.V400V 0.29 TCGA-EB-A3XF-01 2 167149800 167149800 C T SCN9A Missense_Mutation p.A350T 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 2 169763260 169763260 C T G6PC2 Missense_Mutation p.P176L 0.25 deleterious(0) possibly_damaging(0.609) TCGA-EB-A3XF-01 2 172935770 172935770 C T METAP1D Missense_Mutation p.P226S 0.26 tolerated(0.14) benign(0.175) TCGA-EB-A3XF-01 2 179440845 179440845 C T TTN Silent p.R23338R 0.49 TCGA-EB-A3XF-01 2 179450028 179450028 C T TTN Silent p.G21481G 0.56 TCGA-EB-A3XF-01 2 189849965 189849965 G A COL3A1 Missense_Mutation p.G109R 0.26 unknown(0) TCGA-EB-A3XF-01 2 201499582 201499582 G A AOX1 Missense_Mutation p.G764R 0.34 tolerated(0.08) probably_damaging(0.955) TCGA-EB-A3XF-01 2 201785843 201785843 G A ORC2 Silent p.F389F 0.53 TCGA-EB-A3XF-01 2 212285294 212285294 A T ERBB4 Missense_Mutation p.F1003I 0.22 deleterious(0.02) benign(0.398) TCGA-EB-A3XF-01 2 215279277 215279277 G A VWC2L Silent p.G120G 0.48 TCGA-EB-A3XF-01 2 215807728 215807728 C T ABCA12 Missense_Mutation p.E2453K 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 2 215865727 215865727 G A ABCA12 Missense_Mutation p.P961S 0.51 deleterious(0.04) probably_damaging(1) TCGA-EB-A3XF-01 2 216295443 216295443 G A FN1 Missense_Mutation p.S227F 0.54 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 2 220422584 220422584 G A OBSL1 Missense_Mutation p.P1251S 0.59 tolerated(0.27) benign(0.052) TCGA-EB-A3XF-01 2 224630016 224630016 C T AP1S3 Missense_Mutation p.D115N 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3XF-01 2 228418503 228418503 C T AGFG1 Missense_Mutation p.P563S 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 2 228563528 228563528 G A SLC19A3 Silent p.I301I 0.51 TCGA-EB-A3XF-01 2 233274325 233274325 G A ALPPL2 Missense_Mutation p.G448R 0.58 deleterious(0.05) benign(0.009) TCGA-EB-A3XF-01 2 234184457 234184457 C T ATG16L1 Intron 0.46 TCGA-EB-A3XF-01 2 234355425 234355425 T C DGKD Missense_Mutation p.F468L 0.52 tolerated(0.66) benign(0.001) TCGA-EB-A3XF-01 2 234405412 234405412 G A USP40 Missense_Mutation p.P939S 0.50 deleterious(0) probably_damaging(0.993) TCGA-EB-A3XF-01 2 27455482 27455482 C T CAD Missense_Mutation p.L938F 0.22 deleterious(0) probably_damaging(0.978) TCGA-EB-A3XF-01 2 30954253 30954253 T C CAPN13 Missense_Mutation p.N647S 0.36 deleterious(0.02) benign(0.27) TCGA-EB-A3XF-01 2 30966311 30966311 C T CAPN13 Silent p.Q461Q 0.34 TCGA-EB-A3XF-01 2 33036137 33036137 G A TTC27 Missense_Mutation p.R682Q 0.47 tolerated(0.3) benign(0.18) TCGA-EB-A3XF-01 2 37232880 37232880 A G HEATR5B Silent p.C1600C 0.24 TCGA-EB-A3XF-01 2 37295921 37295921 G A HEATR5B Silent p.I360I 0.43 TCGA-EB-A3XF-01 2 48573659 48573659 G A FOXN2 Silent p.Q102Q 0.39 TCGA-EB-A3XF-01 2 70890433 70890433 C T ADD2 3'UTR 0.43 TCGA-EB-A3XF-01 2 73161097 73161097 A G EMX1 3'UTR 0.27 TCGA-EB-A3XF-01 2 73830401 73830401 G A ALMS1 Missense_Mutation p.S4110N 0.42 benign(0.291) TCGA-EB-A3XF-01 2 8873701 8873701 G A KIDINS220 Missense_Mutation p.S1309F 0.37 deleterious_low_confidence(0.05) benign(0.025) TCGA-EB-A3XF-01 2 9570070 9570070 C T CPSF3 Missense_Mutation p.P45S 0.36 deleterious(0) probably_damaging(0.985) TCGA-EB-A3XF-01 2 98928328 98928328 A T VWA3B Nonsense_Mutation p.K1190* 0.39 TCGA-EB-A3XF-01 2 98986517 98986517 C T CNGA3 Missense_Mutation p.R27C 0.26 tolerated_low_confidence(0.08) benign(0.002) TCGA-EB-A3XF-01 3 100295833 100295833 C A TMEM45A Silent p.R267R 0.38 TCGA-EB-A3XF-01 3 108211420 108211420 C T MYH15 Silent p.V286V 0.39 TCGA-EB-A3XF-01 3 111667778 111667778 G T PHLDB2 Splice_Site p.X830_splice 0.24 TCGA-EB-A3XF-01 3 122001062 122001062 G A CASR Missense_Mutation p.G581R 0.38 deleterious(0) probably_damaging(0.99) TCGA-EB-A3XF-01 3 123983355 123983355 T A KALRN Missense_Mutation p.C90S 0.35 tolerated(0.17) benign(0.047) TCGA-EB-A3XF-01 3 124390568 124390568 A G KALRN Silent p.Q346Q 0.32 TCGA-EB-A3XF-01 3 128712114 128712114 G A KIAA1257 Missense_Mutation p.P12S 0.39 tolerated(0.77) benign(0.013) TCGA-EB-A3XF-01 3 13379373 13379373 G A NUP210 Silent p.I1172I 0.41 TCGA-EB-A3XF-01 3 138738751 138738751 C T PRR23B Silent p.P251P 0.39 TCGA-EB-A3XF-01 3 183273410 183273410 G A KLHL6 Missense_Mutation p.T11I 0.43 deleterious_low_confidence(0.03) benign(0) TCGA-EB-A3XF-01 3 184010047 184010047 G A ECE2 3'UTR 0.40 TCGA-EB-A3XF-01 3 193039583 193039583 G A ATP13A5 Missense_Mutation p.S601F 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 3 193049097 193049097 G A ATP13A5 Missense_Mutation p.P426S 0.41 tolerated(0.48) benign(0.037) TCGA-EB-A3XF-01 3 195505203 195505203 G A MUC4 Missense_Mutation p.A4305V 0.42 possibly_damaging(0.739) TCGA-EB-A3XF-01 3 27758960 27758960 G A EOMES Silent p.P554P 0.40 TCGA-EB-A3XF-01 3 32933053 32933053 C T TRIM71 Missense_Mutation p.S786L 0.35 deleterious(0) benign(0.241) TCGA-EB-A3XF-01 3 33110330 33110330 G A GLB1 Silent p.I126I 0.32 TCGA-EB-A3XF-01 3 369909 369909 C T CHL1 Missense_Mutation p.S86L 0.36 tolerated(0.13) benign(0.084) TCGA-EB-A3XF-01 3 38136475 38136475 G A DLEC1 Silent p.K675K 0.43 TCGA-EB-A3XF-01 3 405007 405007 C T CHL1 Missense_Mutation p.S509L 0.38 tolerated(0.07) benign(0.373) TCGA-EB-A3XF-01 3 407674 407674 C T CHL1 Missense_Mutation p.P543S 0.17 tolerated(0.74) benign(0.034) TCGA-EB-A3XF-01 3 53700370 53700370 C T CACNA1D Silent p.I308I 0.35 TCGA-EB-A3XF-01 3 54871252 54871252 G A CACNA2D3 Missense_Mutation p.E489K 0.26 deleterious(0) probably_damaging(0.995) TCGA-EB-A3XF-01 3 58108948 58108948 C T FLNB Silent p.I1085I 0.32 TCGA-EB-A3XF-01 3 7348293 7348293 C T GRM7 Silent p.I329I 0.33 TCGA-EB-A3XF-01 3 77657038 77657038 C A ROBO2 Missense_Mutation p.P1092T 0.26 deleterious(0) possibly_damaging(0.641) TCGA-EB-A3XF-01 3 97251253 97251253 A G EPHA6 Missense_Mutation p.E751G 0.25 deleterious(0) possibly_damaging(0.858) TCGA-EB-A3XF-01 3 9771274 9771274 G A CPNE9 Silent p.E520E 0.40 TCGA-EB-A3XF-01 4 110687959 110687959 C T CFI Missense_Mutation p.D27N 0.33 tolerated(0.11) benign(0.003) TCGA-EB-A3XF-01 4 144920579 144920579 G A GYPB Missense_Mutation p.R54C 0.33 tolerated(0.06) benign(0.385) TCGA-EB-A3XF-01 4 15444183 15444183 G A C1QTNF7 Silent p.L217L 0.29 TCGA-EB-A3XF-01 4 155242266 155242266 C T DCHS2 Missense_Mutation p.D974N 0.18 tolerated(0.19) benign(0.271) TCGA-EB-A3XF-01 4 156773408 156773408 G A ASIC5 Missense_Mutation p.L216F 0.18 tolerated(0.41) benign(0.005) TCGA-EB-A3XF-01 4 164534677 164534677 G A MARCH1 Intron 0.50 TCGA-EB-A3XF-01 4 165890966 165890966 C T TRIM61 Silent p.R63R 0.16 TCGA-EB-A3XF-01 4 167656116 167656116 C T SPOCK3 Missense_Mutation p.G423R 0.21 tolerated_low_confidence(0.07) unknown(0) TCGA-EB-A3XF-01 4 173942751 173942751 G A GALNTL6 Missense_Mutation p.G538E 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 4 177069291 177069291 C T WDR17 Nonsense_Mutation p.R592* 0.38 TCGA-EB-A3XF-01 4 183714018 183714018 G A TENM3 Missense_Mutation p.D2065N 0.50 tolerated(0.06) possibly_damaging(0.811) TCGA-EB-A3XF-01 4 187172799 187172799 G T KLKB1 Nonsense_Mutation p.E343* 0.21 TCGA-EB-A3XF-01 4 189012760 189012760 G C TRIML2 Missense_Mutation p.L311V 0.30 tolerated(1) benign(0.002) TCGA-EB-A3XF-01 4 189060977 189060977 G A TRIML1 Missense_Mutation p.E89K 0.27 tolerated(0.83) benign(0.018) TCGA-EB-A3XF-01 4 23830128 23830128 C T PPARGC1A Missense_Mutation p.D218N 0.27 tolerated(0.16) benign(0.148) TCGA-EB-A3XF-01 4 3189513 3189513 A G HTT Missense_Mutation p.T1709A 0.44 benign(0) TCGA-EB-A3XF-01 4 3451098 3451098 G A HGFAC Nonsense_Mutation p.W640* 0.31 TCGA-EB-A3XF-01 4 36230271 36230271 G A ARAP2 Nonsense_Mutation p.R280* 0.34 TCGA-EB-A3XF-01 4 39439544 39439544 G A KLB Missense_Mutation p.E512K 0.24 deleterious(0.01) possibly_damaging(0.67) TCGA-EB-A3XF-01 4 42895325 42895325 G A GRXCR1 Silent p.R14R 0.34 TCGA-EB-A3XF-01 4 56304625 56304625 T C CLOCK Missense_Mutation p.M729V 0.40 tolerated(0.37) probably_damaging(0.958) TCGA-EB-A3XF-01 4 57182456 57182456 C T KIAA1211 Missense_Mutation p.P930S 0.44 tolerated(0.18) possibly_damaging(0.803) TCGA-EB-A3XF-01 4 70346524 70346524 C T UGT2B4 Missense_Mutation p.G472E 0.32 deleterious(0) probably_damaging(0.994) TCGA-EB-A3XF-01 4 75673342 75673342 C T BTC Missense_Mutation p.R149H 0.24 tolerated(0.15) benign(0.109) TCGA-EB-A3XF-01 4 77678003 77678003 C T SHROOM3 Missense_Mutation p.P1704L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 4 77816665 77816665 C T SOWAHB Missense_Mutation p.E780K 0.35 deleterious(0.04) benign(0.292) TCGA-EB-A3XF-01 4 81967744 81967744 C T BMP3 Missense_Mutation p.S390F 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A3XF-01 4 85538796 85538796 G A CDS1 Nonsense_Mutation p.W141* 0.27 TCGA-EB-A3XF-01 5 101834693 101834693 G A SLCO6A1 5'UTR 0.60 TCGA-EB-A3XF-01 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.46 TCGA-EB-A3XF-01 5 132409815 132409815 G A HSPA4 Silent p.L220L 0.60 TCGA-EB-A3XF-01 5 140167270 140167270 G A PCDHA1 Silent p.K465K 0.52 TCGA-EB-A3XF-01 5 140262677 140262677 G A PCDHA13 Missense_Mutation p.G275E 0.71 deleterious_low_confidence(0.03) probably_damaging(0.92) TCGA-EB-A3XF-01 5 140537677 140537677 C T PCDHB17 3'UTR 0.59 TCGA-EB-A3XF-01 5 156788492 156788492 C T CYFIP2 Silent p.F949F 0.57 TCGA-EB-A3XF-01 5 167990967 167990967 C T PANK3 Missense_Mutation p.D247N 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 5 169028625 169028625 C T SPDL1 Missense_Mutation p.P556S 0.37 tolerated(0.15) benign(0.023) TCGA-EB-A3XF-01 5 175823530 175823530 G A CLTB Silent p.I156I 0.29 TCGA-EB-A3XF-01 5 176308764 176308764 G A HK3 Silent p.F774F 0.33 TCGA-EB-A3XF-01 5 176409576 176409576 G A UIMC1 Missense_Mutation p.S14F 0.45 tolerated(0.08) benign(0.005) TCGA-EB-A3XF-01 5 176517411 176517411 C T FGFR4 Silent p.L38L 0.35 TCGA-EB-A3XF-01 5 179290935 179290935 G A TBC1D9B Missense_Mutation p.P1089L 0.30 deleterious(0.04) benign(0) TCGA-EB-A3XF-01 5 33461376 33461376 C T TARS Silent p.I542I 0.33 TCGA-EB-A3XF-01 5 38350718 38350718 A G EGFLAM Missense_Mutation p.Q136R 0.42 tolerated_low_confidence(0.09) benign(0.009) TCGA-EB-A3XF-01 5 38881715 38881715 G A OSMR Silent p.V89V 0.26 TCGA-EB-A3XF-01 5 39341263 39341263 C T C9 Missense_Mutation p.R154Q 0.43 deleterious(0.03) probably_damaging(0.966) TCGA-EB-A3XF-01 5 40835322 40835322 G A RPL37 5'UTR 0.43 TCGA-EB-A3XF-01 5 5303383 5303383 G A ADAMTS16 Nonsense_Mutation p.W931* 0.29 TCGA-EB-A3XF-01 5 53752062 53752062 G A HSPB3 Missense_Mutation p.G148E 0.37 deleterious(0.04) benign(0.087) TCGA-EB-A3XF-01 5 66441150 66441150 C A MAST4 Missense_Mutation p.Q1013K 0.18 benign(0.067) TCGA-EB-A3XF-01 5 79084869 79084869 G T CMYA5 Missense_Mutation p.R3877S 0.36 possibly_damaging(0.827) TCGA-EB-A3XF-01 5 90059162 90059162 C T GPR98 Missense_Mutation p.S4054L 0.30 possibly_damaging(0.849) TCGA-EB-A3XF-01 5 96512932 96512932 C T RIOK2 Missense_Mutation p.R129K 0.32 deleterious(0) probably_damaging(0.97) TCGA-EB-A3XF-01 6 101053472 101053472 G A ASCC3 Missense_Mutation p.L1717F 0.72 deleterious(0) probably_damaging(0.991) TCGA-EB-A3XF-01 6 102124506 102124506 C T GRIK2 Missense_Mutation p.R184C 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 6 123377059 123377059 G T CLVS2 Missense_Mutation p.A262S 0.06 tolerated(0.27) possibly_damaging(0.652) TCGA-EB-A3XF-01 6 128404961 128404961 G A PTPRK Missense_Mutation p.P492S 0.50 tolerated(0.39) benign(0.011) TCGA-EB-A3XF-01 6 129901277 129901277 C A ARHGAP18 Splice_Site p.X613_splice 0.14 TCGA-EB-A3XF-01 6 131949299 131949299 C T MED23 5'UTR 0.71 TCGA-EB-A3XF-01 6 131999021 131999021 A G ENPP3 Missense_Mutation p.T318A 0.71 tolerated(0.28) benign(0.311) TCGA-EB-A3XF-01 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-EB-A3XF-01 6 144832199 144832199 C T UTRN Silent p.V1628V 0.67 TCGA-EB-A3XF-01 6 18237645 18237645 T C DEK Missense_Mutation p.T289A 0.34 tolerated(0.09) possibly_damaging(0.899) TCGA-EB-A3XF-01 6 25773553 25773553 G A SLC17A4 Missense_Mutation p.D253N 0.38 deleterious(0.03) possibly_damaging(0.896) TCGA-EB-A3XF-01 6 28057293 28057293 G A ZNF165 3'UTR 0.22 TCGA-EB-A3XF-01 6 29274630 29274630 C T OR14J1 Missense_Mutation p.S55F 0.39 deleterious(0) possibly_damaging(0.896) TCGA-EB-A3XF-01 6 31922134 31922134 G A NELFE Silent p.L276L 0.34 TCGA-EB-A3XF-01 6 32024646 32024646 G A TNXB Silent p.T2620T 0.29 TCGA-EB-A3XF-01 6 32024647 32024647 G A TNXB Missense_Mutation p.T2620I 0.28 probably_damaging(0.994) TCGA-EB-A3XF-01 6 35923188 35923188 T G SLC26A8 Missense_Mutation p.E658A 0.48 tolerated(0.17) benign(0.403) TCGA-EB-A3XF-01 6 43316306 43316306 A C ZNF318 Missense_Mutation p.V943G 0.45 possibly_damaging(0.69) TCGA-EB-A3XF-01 6 43316307 43316307 C T ZNF318 Missense_Mutation p.V943M 0.43 benign(0.124) TCGA-EB-A3XF-01 6 56484762 56484762 T C DST Intron 0.54 TCGA-EB-A3XF-01 6 7396957 7396957 C T RIOK1 Missense_Mutation p.S130F 0.24 tolerated(0.09) possibly_damaging(0.897) TCGA-EB-A3XF-01 7 100334177 100334177 G A ZAN Missense_Mutation p.D60N 0.39 possibly_damaging(0.624) TCGA-EB-A3XF-01 7 100490867 100490867 G T ACHE Silent p.S329S 0.31 TCGA-EB-A3XF-01 7 103205777 103205777 C - RELN Frame_Shift_Del p.E1720Kfs*109 0.23 TCGA-EB-A3XF-01 7 116397530 116397530 C T MET Silent p.F634F 0.59 TCGA-EB-A3XF-01 7 120591192 120591192 C T ING3 Intron 0.38 TCGA-EB-A3XF-01 7 120591193 120591193 C T ING3 Intron 0.37 TCGA-EB-A3XF-01 7 126086345 126086345 C T GRM8 Missense_Mutation p.V838I 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-EB-A3XF-01 7 131887492 131887492 G A PLXNA4 Silent p.T833T 0.27 TCGA-EB-A3XF-01 7 138333786 138333786 G A SVOPL Missense_Mutation p.P211S 0.24 deleterious(0) probably_damaging(0.969) TCGA-EB-A3XF-01 7 138433971 138433971 G A ATP6V0A4 Missense_Mutation p.A374V 0.23 tolerated(0.19) benign(0.392) TCGA-EB-A3XF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-EB-A3XF-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.42 deleterious(0) possibly_damaging(0.838) TCGA-EB-A3XF-01 7 141752712 141752712 C T MGAM Silent p.A1029A 0.31 TCGA-EB-A3XF-01 7 142206582 142206582 C T TRBV10-2 Silent p.E91E 0.20 TCGA-EB-A3XF-01 7 142562484 142562484 G A EPHB6 Missense_Mutation p.R309Q 0.24 tolerated(0.11) benign(0.093) TCGA-EB-A3XF-01 7 142565375 142565375 C T EPHB6 Missense_Mutation p.S587F 0.42 deleterious(0.04) benign(0.139) TCGA-EB-A3XF-01 7 142611874 142611874 C T TRPV5 Missense_Mutation p.M485I 0.44 tolerated(0.44) benign(0.256) TCGA-EB-A3XF-01 7 148800986 148800986 G A ZNF425 Silent p.V659V 0.54 TCGA-EB-A3XF-01 7 149515812 149515812 C T SSPO RNA 0.16 TCGA-EB-A3XF-01 7 150390085 150390085 G A GIMAP2 Silent p.K237K 0.28 TCGA-EB-A3XF-01 7 150390223 150390223 G A GIMAP2 Silent p.L283L 0.33 TCGA-EB-A3XF-01 7 150558071 150558071 C T AOC1 Missense_Mutation p.P677L 0.16 deleterious(0) probably_damaging(0.987) TCGA-EB-A3XF-01 7 151874755 151874755 G A KMT2C Missense_Mutation p.P2595S 0.58 benign(0.021) TCGA-EB-A3XF-01 7 2275003 2275003 G A FTSJ2 Silent p.L165L 0.31 TCGA-EB-A3XF-01 7 23768743 23768743 G A STK31 Missense_Mutation p.E120K 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 7 39612351 39612351 T A YAE1D1 3'UTR 0.14 TCGA-EB-A3XF-01 7 39612368 39612368 T A YAE1D1 3'UTR 0.21 TCGA-EB-A3XF-01 7 47343129 47343129 G A TNS3 Missense_Mutation p.S959F 0.38 deleterious(0) possibly_damaging(0.541) TCGA-EB-A3XF-01 7 47454723 47454723 G A TNS3 Silent p.L185L 0.36 TCGA-EB-A3XF-01 7 47869643 47869643 G A PKD1L1 Missense_Mutation p.L2185F 0.31 tolerated(0.09) benign(0.263) TCGA-EB-A3XF-01 7 63538343 63538343 C T ZNF727 Missense_Mutation p.H306Y 0.25 deleterious(0.01) probably_damaging(0.943) TCGA-EB-A3XF-01 7 74159195 74159195 C T GTF2I Missense_Mutation p.P617S 0.29 tolerated(0.13) possibly_damaging(0.874) TCGA-EB-A3XF-01 7 76903013 76903013 G A CCDC146 Missense_Mutation p.M392I 0.35 tolerated(0.54) benign(0.001) TCGA-EB-A3XF-01 7 77649243 77649243 C T MAGI2 Missense_Mutation p.E1253K 0.31 deleterious(0.02) possibly_damaging(0.899) TCGA-EB-A3XF-01 7 77830494 77830494 C T MAGI2 Nonsense_Mutation p.W688* 0.29 TCGA-EB-A3XF-01 7 87053346 87053346 G A ABCB4 Missense_Mutation p.S696F 0.34 deleterious(0) benign(0.315) TCGA-EB-A3XF-01 7 88424277 88424277 C T C7orf62 5'UTR 0.36 TCGA-EB-A3XF-01 7 94049584 94049584 C T COL1A2 Missense_Mutation p.P707S 0.38 unknown(0) TCGA-EB-A3XF-01 7 99799476 99799476 C T STAG3 Missense_Mutation p.S763L 0.33 tolerated(0.09) benign(0.017) TCGA-EB-A3XF-01 8 108315580 108315580 C T ANGPT1 Missense_Mutation p.G275E 0.20 tolerated(1) benign(0.021) TCGA-EB-A3XF-01 8 109229661 109229661 G A EIF3E Missense_Mutation p.P251S 0.25 deleterious(0.04) benign(0.13) TCGA-EB-A3XF-01 8 109796685 109796685 C T TMEM74 Missense_Mutation p.E215K 0.27 deleterious(0) possibly_damaging(0.593) TCGA-EB-A3XF-01 8 110592313 110592313 G A SYBU Intron 0.32 TCGA-EB-A3XF-01 8 110984492 110984492 G A KCNV1 Missense_Mutation p.S329F 0.51 deleterious(0) possibly_damaging(0.893) TCGA-EB-A3XF-01 8 110986246 110986246 G A KCNV1 Silent p.V124V 0.57 TCGA-EB-A3XF-01 8 113933893 113933893 A T CSMD3 Silent p.V532V 0.49 TCGA-EB-A3XF-01 8 114389001 114389001 C T CSMD3 Intron 0.28 TCGA-EB-A3XF-01 8 11704593 11704593 G A CTSB Missense_Mutation p.S254F 0.37 tolerated(0.08) benign(0.062) TCGA-EB-A3XF-01 8 121259890 121259890 G A COL14A1 Missense_Mutation p.E840K 0.55 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A3XF-01 8 121471556 121471556 C T MTBP Silent p.I283I 0.18 TCGA-EB-A3XF-01 8 130760960 130760960 G A GSDMC Silent p.F438F 0.49 TCGA-EB-A3XF-01 8 139635980 139635980 C G COL22A1 Missense_Mutation p.E1256Q 0.25 unknown(0) TCGA-EB-A3XF-01 8 142200425 142200425 G A DENND3 Nonsense_Mutation p.W1016* 0.52 TCGA-EB-A3XF-01 8 143866658 143866658 G A LY6D Silent p.V122V 0.45 TCGA-EB-A3XF-01 8 144392362 144392362 G A TOP1MT Silent p.L527L 0.45 TCGA-EB-A3XF-01 8 144802961 144802961 G A MAPK15 Missense_Mutation p.D290N 0.19 tolerated(0.16) benign(0.034) TCGA-EB-A3XF-01 8 1871973 1871973 C T ARHGEF10 Silent p.F807F 0.32 TCGA-EB-A3XF-01 8 20069161 20069161 A C ATP6V1B2 Splice_Site p.X202_splice 0.25 TCGA-EB-A3XF-01 8 2044098 2044098 C T MYOM2 Missense_Mutation p.H713Y 0.35 tolerated(0.18) benign(0.004) TCGA-EB-A3XF-01 8 27667836 27667836 C T PBK Missense_Mutation p.E319K 0.38 tolerated(0.12) benign(0.151) TCGA-EB-A3XF-01 8 2806856 2806856 C T CSMD1 Missense_Mutation p.G3456E 0.48 possibly_damaging(0.853) TCGA-EB-A3XF-01 8 30999035 30999035 C T WRN Silent p.S1019S 0.37 TCGA-EB-A3XF-01 8 39537692 39537692 G A ADAM18 Missense_Mutation p.D590N 0.34 tolerated(0.31) benign(0.186) TCGA-EB-A3XF-01 8 42036493 42036493 T A PLAT Missense_Mutation p.R484S 0.40 tolerated(0.19) possibly_damaging(0.572) TCGA-EB-A3XF-01 8 54142271 54142271 G A OPRK1 Silent p.I243I 0.26 TCGA-EB-A3XF-01 8 54147522 54147522 G A OPRK1 Missense_Mutation p.S136F 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A3XF-01 8 67040632 67040632 G A TRIM55 Missense_Mutation p.D88N 0.51 deleterious(0) possibly_damaging(0.834) TCGA-EB-A3XF-01 8 69380954 69380954 G A C8orf34 Nonsense_Mutation p.W212* 0.21 TCGA-EB-A3XF-01 8 90784906 90784906 C T RIPK2 Missense_Mutation p.P235S 0.50 tolerated(0.22) probably_damaging(0.981) TCGA-EB-A3XF-01 9 107331787 107331787 G A OR13C8 Missense_Mutation p.M113I 0.67 tolerated(0.13) benign(0.001) TCGA-EB-A3XF-01 9 113170218 113170218 G A SVEP1 Silent p.I2554I 0.59 TCGA-EB-A3XF-01 9 113170717 113170717 G A SVEP1 Missense_Mutation p.S2388F 0.62 possibly_damaging(0.739) TCGA-EB-A3XF-01 9 125273443 125273443 C T OR1J2 Silent p.D121D 0.68 TCGA-EB-A3XF-01 9 128113084 128113084 C A GAPVD1 Missense_Mutation p.R1195S 0.62 deleterious(0) probably_damaging(0.999) TCGA-EB-A3XF-01 9 130605399 130605399 G A ENG Missense_Mutation p.H65Y 0.58 deleterious(0) probably_damaging(0.938) TCGA-EB-A3XF-01 9 130885304 130885304 G A PTGES2 Missense_Mutation p.R266C 0.63 deleterious(0) benign(0.308) TCGA-EB-A3XF-01 9 135522331 135522331 G A DDX31 Missense_Mutation p.P466L 0.57 tolerated(0.27) benign(0.005) TCGA-EB-A3XF-01 9 33265001 33265001 G A CHMP5 5'UTR 0.30 TCGA-EB-A3XF-01 X 100515612 100515612 G A DRP2 3'UTR 0.69 TCGA-EB-A3XF-01 X 101623493 101623493 G A NXF2B Missense_Mutation p.S228F 0.25 tolerated(0.14) benign(0.063) TCGA-EB-A3XF-01 X 118222216 118222216 G A KIAA1210 Missense_Mutation p.P993S 0.78 tolerated(0.13) benign(0.155) TCGA-EB-A3XF-01 X 130678886 130678886 T C OR13H1 Missense_Mutation p.L280S 0.72 deleterious(0) probably_damaging(0.988) TCGA-EB-A3XF-01 X 148664884 148664884 G A MAGEA9B 5'UTR 0.40 TCGA-EB-A3XF-01 X 150348705 150348705 C T GPR50 Missense_Mutation p.A217V 0.79 deleterious(0.03) benign(0.018) TCGA-EB-A3XF-01 X 151303869 151303869 G A MAGEA10 Missense_Mutation p.S75F 0.77 tolerated(0.19) benign(0.012) TCGA-EB-A3XF-01 X 151899978 151899978 G A MAGEA12 Missense_Mutation p.P275S 0.71 deleterious(0.03) possibly_damaging(0.699) TCGA-EB-A3XF-01 X 152226589 152226589 C T PNMA3 Nonsense_Mutation p.R393* 0.68 TCGA-EB-A3XF-01 X 153062924 153062924 C T SSR4 Silent p.L66L 0.85 TCGA-EB-A3XF-01 X 155239594 155239594 C T IL9R Silent p.G362G 0.45 TCGA-EB-A3XF-01 X 3235575 3235575 G A MXRA5 Silent p.I2049I 0.71 TCGA-EB-A3XF-01 X 50125577 50125577 C T DGKK RNA 0.69 TCGA-EB-A3XF-01 X 54099713 54099713 G A FAM120C Missense_Mutation p.S1015L 0.86 tolerated(0.17) benign(0.004) TCGA-EB-A3Y6-01 10 115489079 115489079 C T CASP7 Missense_Mutation p.S264L 0.42 deleterious(0) probably_damaging(0.943) TCGA-EB-A3Y6-01 10 127677213 127677213 G T FANK1 Missense_Mutation p.E95D 0.50 tolerated(0.58) benign(0.001) TCGA-EB-A3Y6-01 10 133950552 133950552 C A JAKMIP3 Silent p.P382P 0.27 TCGA-EB-A3Y6-01 10 15008489 15008489 C T MEIG1 Missense_Mutation p.P8S 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-EB-A3Y6-01 10 15138530 15138530 C T C10orf111 Silent p.L98L 0.26 TCGA-EB-A3Y6-01 10 15254738 15254738 G A FAM171A1 3'UTR 0.29 TCGA-EB-A3Y6-01 10 17201180 17201180 G A TRDMT1 Nonsense_Mutation p.Q170* 0.23 TCGA-EB-A3Y6-01 10 17921782 17921782 C T MRC1L1 Missense_Mutation p.P890S 0.11 probably_damaging(0.954) TCGA-EB-A3Y6-01 10 28224135 28224135 C T ARMC4 Missense_Mutation p.D767N 0.25 tolerated(0.3) benign(0.074) TCGA-EB-A3Y6-01 10 35456533 35456533 C T CREM Intron 0.27 TCGA-EB-A3Y6-01 10 37506687 37506687 G A ANKRD30A Missense_Mutation p.E994K 0.27 tolerated(0.06) possibly_damaging(0.636) TCGA-EB-A3Y6-01 10 50819306 50819306 G A SLC18A3 Missense_Mutation p.D174N 0.47 tolerated(0.39) benign(0.002) TCGA-EB-A3Y6-01 10 58119549 58119549 C T ZWINT Missense_Mutation p.E108K 0.28 deleterious(0) probably_damaging(0.981) TCGA-EB-A3Y6-01 10 61830807 61830807 C T ANK3 Missense_Mutation p.E3278K 0.44 possibly_damaging(0.757) TCGA-EB-A3Y6-01 10 68526081 68526081 C T CTNNA3 Missense_Mutation p.E408K 0.19 deleterious(0.01) benign(0.393) TCGA-EB-A3Y6-01 10 73559030 73559030 C T CDH23 Missense_Mutation p.S166F 0.54 tolerated(0.34) benign(0.006) TCGA-EB-A3Y6-01 10 73956612 73956612 C T ASCC1 Missense_Mutation p.G177E 0.58 tolerated(0.21) possibly_damaging(0.507) TCGA-EB-A3Y6-01 10 90673167 90673167 C T STAMBPL1 Missense_Mutation p.P244S 0.48 tolerated(0.79) benign(0.064) TCGA-EB-A3Y6-01 10 96602772 96602772 C T CYP2C19 Silent p.L380L 0.20 TCGA-EB-A3Y6-01 10 96707690 96707690 G A CYP2C9 Nonsense_Mutation p.W212* 0.36 TCGA-EB-A3Y6-01 11 101818843 101818843 C T KIAA1377 Missense_Mutation p.P159L 0.29 tolerated(0.16) benign(0.176) TCGA-EB-A3Y6-01 11 1083068 1083068 G A MUC2 Silent p.K656K 0.31 TCGA-EB-A3Y6-01 11 108384738 108384738 G A EXPH5 Missense_Mutation p.S499L 0.36 tolerated(0.11) benign(0.006) TCGA-EB-A3Y6-01 11 121031050 121031050 T A TECTA Missense_Mutation p.D1632E 0.43 deleterious(0) probably_damaging(0.958) TCGA-EB-A3Y6-01 11 124765452 124765452 G A ROBO4 Missense_Mutation p.L313F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 11 124765453 124765453 G A ROBO4 Silent p.G312G 0.38 TCGA-EB-A3Y6-01 11 130130907 130130907 G A ZBTB44 Missense_Mutation p.R288W 0.33 deleterious(0) possibly_damaging(0.821) TCGA-EB-A3Y6-01 11 130130909 130130909 A G ZBTB44 Missense_Mutation p.V287A 0.32 tolerated(0.18) benign(0.133) TCGA-EB-A3Y6-01 11 16010698 16010698 T G SOX6 Missense_Mutation p.E584A 0.29 tolerated(0.09) probably_damaging(0.96) TCGA-EB-A3Y6-01 11 1629362 1629362 C T KRTAP5-3 Missense_Mutation p.G85E 0.32 tolerated(0.93) unknown(0) TCGA-EB-A3Y6-01 11 18267499 18267499 G A SAA2 Missense_Mutation p.A63V 0.09 deleterious(0.04) benign(0.169) TCGA-EB-A3Y6-01 11 20089873 20089873 C T NAV2 Missense_Mutation p.R1694C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 11 22646955 22646955 G A FANCF Silent p.A134A 0.33 TCGA-EB-A3Y6-01 11 34119268 34119268 G A CAPRIN1 Silent p.K675K 0.33 TCGA-EB-A3Y6-01 11 404102 404102 G A PKP3 Missense_Mutation p.R746Q 0.33 tolerated(0.39) benign(0.219) TCGA-EB-A3Y6-01 11 46564875 46564875 G A AMBRA1 Missense_Mutation p.S231L 0.41 tolerated_low_confidence(0.08) probably_damaging(0.948) TCGA-EB-A3Y6-01 11 47304015 47304015 G A MADD Missense_Mutation p.R518Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.09 TCGA-EB-A3Y6-01 11 4967551 4967551 G A OR51A4 Silent p.A260A 0.12 TCGA-EB-A3Y6-01 11 4976164 4976164 G A OR51A2 Silent p.A260A 0.11 TCGA-EB-A3Y6-01 11 56020129 56020129 C T OR5T3 Missense_Mutation p.H152Y 0.30 deleterious(0.02) benign(0.002) TCGA-EB-A3Y6-01 11 56143749 56143749 C T OR8U1 Missense_Mutation p.S217F 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 11 56185229 56185229 G A OR5R1 Silent p.T160T 0.32 TCGA-EB-A3Y6-01 11 58275399 58275399 G A OR5B21 Silent p.F60F 0.33 TCGA-EB-A3Y6-01 11 58723129 58723129 G A GLYATL1 Missense_Mutation p.G211R 0.30 deleterious(0.04) benign(0.272) TCGA-EB-A3Y6-01 11 5878145 5878145 G A OR52E8 Missense_Mutation p.S263L 0.16 deleterious(0) probably_damaging(0.982) TCGA-EB-A3Y6-01 11 5878833 5878833 C T OR52E8 Missense_Mutation p.G34R 0.40 deleterious(0) probably_damaging(0.988) TCGA-EB-A3Y6-01 11 58920677 58920677 C T FAM111A Silent p.V512V 0.20 TCGA-EB-A3Y6-01 11 61727429 61727429 G A BEST1 Nonsense_Mutation p.W278* 0.31 TCGA-EB-A3Y6-01 11 61976141 61976141 C T SCGB2A1 5'UTR 0.30 TCGA-EB-A3Y6-01 11 62296610 62296610 G A AHNAK Missense_Mutation p.P1760L 0.37 possibly_damaging(0.851) TCGA-EB-A3Y6-01 11 63488180 63488180 C T RTN3 Missense_Mutation p.L736F 0.22 tolerated(0.05) benign(0.048) TCGA-EB-A3Y6-01 11 63706495 63706495 G A NAA40 5'UTR 0.39 TCGA-EB-A3Y6-01 11 64026056 64026056 C T PLCB3 Missense_Mutation p.P375L 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 11 65350131 65350131 T C EHBP1L1 Missense_Mutation p.V663A 0.08 tolerated(0.1) benign(0.015) TCGA-EB-A3Y6-01 11 66001661 66001661 C T PACS1 Silent p.F684F 0.26 TCGA-EB-A3Y6-01 11 66620283 66620283 G A PC Missense_Mutation p.T513I 0.21 tolerated(0.2) benign(0.003) TCGA-EB-A3Y6-01 11 67159653 67159653 C T RAD9A Missense_Mutation p.S19F 0.32 deleterious(0) probably_damaging(0.989) TCGA-EB-A3Y6-01 11 67174417 67174417 C T TBC1D10C Silent p.F256F 0.23 TCGA-EB-A3Y6-01 11 67399796 67399796 C T TBX10 Silent p.R287R 0.13 TCGA-EB-A3Y6-01 11 7441758 7441758 C T SYT9 Silent p.I453I 0.16 TCGA-EB-A3Y6-01 11 74904307 74904307 C T SLCO2B1 Silent p.L374L 0.35 TCGA-EB-A3Y6-01 11 7949552 7949552 G A OR10A6 Nonsense_Mutation p.R220* 0.36 TCGA-EB-A3Y6-01 11 86663456 86663456 A G FZD4 Silent p.I114I 0.36 TCGA-EB-A3Y6-01 12 110813743 110813743 T A ANAPC7 Intron 0.25 TCGA-EB-A3Y6-01 12 111356938 111356938 G A MYL2 Silent p.F21F 0.12 TCGA-EB-A3Y6-01 12 11184008 11184008 G A TAS2R31 5'Flank 0.33 TCGA-EB-A3Y6-01 12 112572540 112572540 A T TRAFD1 Splice_Site p.X16_splice 0.25 TCGA-EB-A3Y6-01 12 112646400 112646400 G A HECTD4 Silent p.V2488V 0.31 TCGA-EB-A3Y6-01 12 112648052 112648052 G A HECTD4 Missense_Mutation p.T2399I 0.27 benign(0.021) TCGA-EB-A3Y6-01 12 117655959 117655959 C T NOS1 Missense_Mutation p.R1428Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y6-01 12 120151077 120151077 C T CIT Missense_Mutation p.G1504S 0.22 tolerated(0.06) probably_damaging(1) TCGA-EB-A3Y6-01 12 126004054 126004054 G A TMEM132B Silent p.G387G 0.21 TCGA-EB-A3Y6-01 12 126004055 126004055 G A TMEM132B Missense_Mutation p.A388T 0.21 tolerated(1) benign(0.197) TCGA-EB-A3Y6-01 12 18889240 18889240 C T PLCZ1 Missense_Mutation p.G17E 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 12 18891655 18891655 G A CAPZA3 Silent p.L151L 0.12 TCGA-EB-A3Y6-01 12 2595325 2595325 C T CACNA1C Silent p.I271I 0.38 TCGA-EB-A3Y6-01 12 283916 283916 C T IQSEC3 Missense_Mutation p.T1089I 0.25 deleterious(0) possibly_damaging(0.86) TCGA-EB-A3Y6-01 12 31545314 31545314 G A DENND5B Missense_Mutation p.T1118I 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 12 33031966 33031966 C T PKP2 Missense_Mutation p.G75E 0.12 deleterious(0) probably_damaging(0.979) TCGA-EB-A3Y6-01 12 43826148 43826148 C T ADAMTS20 Missense_Mutation p.E1019K 0.21 tolerated(0.07) probably_damaging(0.911) TCGA-EB-A3Y6-01 12 46591825 46591825 C T SLC38A1 Missense_Mutation p.E381K 0.19 tolerated(0.06) possibly_damaging(0.883) TCGA-EB-A3Y6-01 12 4737001 4737001 G A AKAP3 Missense_Mutation p.S356L 0.26 deleterious(0) possibly_damaging(0.821) TCGA-EB-A3Y6-01 12 48372385 48372385 G A COL2A1 Missense_Mutation p.P964S 0.34 unknown(0) TCGA-EB-A3Y6-01 12 48920040 48920040 G A OR8S1 Missense_Mutation p.G209E 0.32 deleterious(0.02) benign(0.16) TCGA-EB-A3Y6-01 12 51138511 51138511 G A DIP2B Silent p.V1540V 0.15 TCGA-EB-A3Y6-01 12 51138512 51138512 G A DIP2B Missense_Mutation p.D1541N 0.15 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y6-01 12 51458059 51458059 G A CSRNP2 Missense_Mutation p.P368S 0.25 tolerated(0.3) benign(0.116) TCGA-EB-A3Y6-01 12 52283227 52283227 G A ANKRD33 Missense_Mutation p.G200R 0.31 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y6-01 12 56092216 56092216 G A ITGA7 Silent p.F385F 0.34 TCGA-EB-A3Y6-01 12 56571847 56571847 G C SMARCC2 Silent p.P447P 0.25 TCGA-EB-A3Y6-01 12 66152542 66152542 C T RPSAP52 RNA 0.30 TCGA-EB-A3Y6-01 12 68553401 68553401 C T IFNG 5'UTR 0.67 TCGA-EB-A3Y6-01 12 69250346 69250346 A C CPM Missense_Mutation p.D401E 0.39 tolerated(0.39) benign(0.006) TCGA-EB-A3Y6-01 12 71977842 71977842 C T LGR5 Silent p.I684I 0.19 TCGA-EB-A3Y6-01 12 75444290 75444290 G T KCNC2 Missense_Mutation p.P499T 0.14 tolerated(0.32) benign(0.184) TCGA-EB-A3Y6-01 12 7805245 7805245 G A APOBEC1 Silent p.H77H 0.21 TCGA-EB-A3Y6-01 12 7805253 7805253 C T APOBEC1 Missense_Mutation p.D75N 0.30 tolerated(0.38) benign(0) TCGA-EB-A3Y6-01 12 88926236 88926236 G A KITLG Silent p.V58V 0.26 TCGA-EB-A3Y6-01 12 95566470 95566470 G A FGD6 Missense_Mutation p.P831L 0.24 tolerated(0.13) benign(0.058) TCGA-EB-A3Y6-01 12 95566471 95566471 G A FGD6 Missense_Mutation p.P831S 0.24 tolerated(0.15) benign(0.058) TCGA-EB-A3Y6-01 13 101707749 101707749 G A NALCN Silent p.P1705P 0.18 TCGA-EB-A3Y6-01 13 103438659 103438659 G C KDELC1 Missense_Mutation p.Q472E 0.34 tolerated(0.94) benign(0.077) TCGA-EB-A3Y6-01 13 111935541 111935541 C T ARHGEF7 Missense_Mutation p.P615L 0.30 tolerated(0.18) benign(0.061) TCGA-EB-A3Y6-01 13 32365998 32365998 C T RXFP2 Missense_Mutation p.P401S 0.27 tolerated(0.08) possibly_damaging(0.824) TCGA-EB-A3Y6-01 13 36241700 36241700 C T NBEA Missense_Mutation p.S2864L 0.25 deleterious(0.01) benign(0.191) TCGA-EB-A3Y6-01 13 41331087 41331087 C T MRPS31 Missense_Mutation p.R221K 0.33 tolerated(0.2) benign(0.023) TCGA-EB-A3Y6-01 13 42393388 42393388 A C VWA8 Missense_Mutation p.V612G 0.28 tolerated(0.2) benign(0.017) TCGA-EB-A3Y6-01 13 52676362 52676362 G A NEK5 Missense_Mutation p.P226S 0.27 tolerated(0.19) possibly_damaging(0.58) TCGA-EB-A3Y6-01 13 53422069 53422069 C T PCDH8 Missense_Mutation p.G168E 0.55 tolerated(0.09) possibly_damaging(0.564) TCGA-EB-A3Y6-01 13 72063197 72063197 C T DACH1 Missense_Mutation p.G554S 0.23 benign(0.396) TCGA-EB-A3Y6-01 13 79175704 79175704 G C POU4F1 Missense_Mutation p.S369C 0.10 deleterious(0) unknown(0) TCGA-EB-A3Y6-01 14 101004716 101004716 T A BEGAIN Nonsense_Mutation p.K458* 0.46 TCGA-EB-A3Y6-01 14 101201244 101201244 C T DLK1 3'UTR 0.09 TCGA-EB-A3Y6-01 14 101351093 101351093 C A RTL1 Silent p.T11T 0.13 TCGA-EB-A3Y6-01 14 102606504 102606504 C T WDR20 Missense_Mutation p.R82C 0.27 deleterious(0) possibly_damaging(0.776) TCGA-EB-A3Y6-01 14 20019948 20019948 C T POTEM Missense_Mutation p.M91I 0.07 deleterious_low_confidence(0.01) benign(0.035) TCGA-EB-A3Y6-01 14 20345115 20345115 C T OR4K2 Missense_Mutation p.S230F 0.06 deleterious(0) possibly_damaging(0.521) TCGA-EB-A3Y6-01 14 20502327 20502327 G A OR4K13 Silent p.L197L 0.19 TCGA-EB-A3Y6-01 14 20586066 20586066 G A OR4K17 Missense_Mutation p.M167I 0.17 deleterious(0.04) possibly_damaging(0.868) TCGA-EB-A3Y6-01 14 21897468 21897468 G A CHD8 Silent p.V290V 0.11 TCGA-EB-A3Y6-01 14 22133644 22133644 C T OR4E2 Silent p.I116I 0.21 TCGA-EB-A3Y6-01 14 22293953 22293953 G A TRAV10 Silent p.G19G 0.25 TCGA-EB-A3Y6-01 14 22309797 22309797 G A TRAV12-1 Missense_Mutation p.D60N 0.52 tolerated(0.22) benign(0.092) TCGA-EB-A3Y6-01 14 22362919 22362919 G A TRAV8-4 Missense_Mutation p.G17E 0.15 tolerated(0.16) benign(0.082) TCGA-EB-A3Y6-01 14 33293208 33293208 C T AKAP6 Silent p.I2063I 0.34 TCGA-EB-A3Y6-01 14 58055936 58055936 G A SLC35F4 Silent p.F231F 0.30 TCGA-EB-A3Y6-01 14 67674919 67674919 G A FAM71D Missense_Mutation p.E305K 0.09 deleterious_low_confidence(0) benign(0.367) TCGA-EB-A3Y6-01 14 72431523 72431523 C T RGS6 Silent p.S5S 0.38 TCGA-EB-A3Y6-01 14 77762534 77762534 G A POMT2 Silent p.P363P 0.33 TCGA-EB-A3Y6-01 14 90745472 90745472 G A NRDE2 Silent p.S1101S 0.15 TCGA-EB-A3Y6-01 14 91924925 91924925 G A SMEK1 3'UTR 0.67 TCGA-EB-A3Y6-01 14 92251638 92251638 C T TC2N Silent p.L410L 0.25 TCGA-EB-A3Y6-01 14 93814491 93814491 T A COX8C 3'UTR 0.12 TCGA-EB-A3Y6-01 14 94083625 94083625 A G UNC79 Missense_Mutation p.K1223R 0.12 tolerated(0.77) probably_damaging(0.996) TCGA-EB-A3Y6-01 14 95058429 95058429 G T SERPINA5 Silent p.S358S 0.11 TCGA-EB-A3Y6-01 14 97319244 97319244 C T VRK1 Missense_Mutation p.R151W 0.09 deleterious(0.02) benign(0.067) TCGA-EB-A3Y6-01 14 99723898 99723898 C T BCL11B Missense_Mutation p.V113M 0.09 deleterious(0) benign(0.348) TCGA-EB-A3Y6-01 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.14 deleterious(0) probably_damaging(0.931) TCGA-EB-A3Y6-01 15 24922177 24922177 C T NPAP1 Missense_Mutation p.T388I 0.43 tolerated(0.66) benign(0.003) TCGA-EB-A3Y6-01 15 40661935 40661935 C T DISP2 Missense_Mutation p.P1208S 0.33 tolerated(0.33) benign(0.012) TCGA-EB-A3Y6-01 15 42160643 42160643 G A SPTBN5 Nonsense_Mutation p.Q2004* 0.16 TCGA-EB-A3Y6-01 15 43819245 43819245 C T MAP1A Silent p.S1858S 0.45 TCGA-EB-A3Y6-01 15 50212607 50212607 C T ATP8B4 Missense_Mutation p.E587K 0.28 tolerated(0.29) possibly_damaging(0.672) TCGA-EB-A3Y6-01 15 52504022 52504022 A T MYO5C Missense_Mutation p.F1401I 0.27 deleterious(0) possibly_damaging(0.676) TCGA-EB-A3Y6-01 15 54306718 54306718 G A UNC13C Missense_Mutation p.D540N 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 15 66048603 66048603 A T DENND4A Missense_Mutation p.D62E 0.13 deleterious(0) benign(0.158) TCGA-EB-A3Y6-01 15 71276536 71276536 C T LRRC49 Missense_Mutation p.S375F 0.34 deleterious(0.01) benign(0.017) TCGA-EB-A3Y6-01 15 72641531 72641531 G A HEXA Missense_Mutation p.P292L 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 15 73470671 73470671 G C NEO1 Missense_Mutation p.L398F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 15 73562535 73562535 C T NEO1 Silent p.V893V 0.25 TCGA-EB-A3Y6-01 15 73562536 73562536 C T NEO1 Nonsense_Mutation p.R894* 0.25 TCGA-EB-A3Y6-01 15 78211328 78211328 C T RP11-114H24.7 Intron 0.30 TCGA-EB-A3Y6-01 15 89400231 89400231 C T ACAN Missense_Mutation p.S1472F 0.28 deleterious(0.04) probably_damaging(0.961) TCGA-EB-A3Y6-01 16 1129503 1129503 C T SSTR5 Missense_Mutation p.A212V 0.10 tolerated(0.46) benign(0.138) TCGA-EB-A3Y6-01 16 1511669 1511669 C T CLCN7 Missense_Mutation p.D74N 0.41 tolerated(0.16) benign(0.046) TCGA-EB-A3Y6-01 16 19455411 19455411 G A TMC5 Missense_Mutation p.S266N 0.24 tolerated_low_confidence(0.31) benign(0.004) TCGA-EB-A3Y6-01 16 25228656 25228656 C T AQP8 Silent p.F50F 0.24 TCGA-EB-A3Y6-01 16 27441414 27441414 C T IL21R Missense_Mutation p.P8S 0.20 tolerated(0.59) benign(0.004) TCGA-EB-A3Y6-01 16 28854162 28854162 G A TUFM 3'UTR 0.27 TCGA-EB-A3Y6-01 16 2905675 2905675 G A PRSS22 Silent p.F153F 0.23 TCGA-EB-A3Y6-01 16 30750003 30750003 C T SRCAP Missense_Mutation p.P2881L 0.25 unknown(0) TCGA-EB-A3Y6-01 16 5112559 5112559 G A C16orf89 Silent p.V75V 0.34 TCGA-EB-A3Y6-01 16 5128755 5128755 C T ALG1 Intron 0.39 TCGA-EB-A3Y6-01 16 55359008 55359008 C T IRX6 Missense_Mutation p.S2F 0.15 deleterious(0) possibly_damaging(0.878) TCGA-EB-A3Y6-01 16 57713204 57713204 C T GPR97 Missense_Mutation p.S203F 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-EB-A3Y6-01 16 58001184 58001184 C T CNGB1 Missense_Mutation p.G3S 0.11 tolerated_low_confidence(0.51) benign(0.078) TCGA-EB-A3Y6-01 16 58314158 58314158 G A PRSS54 Silent p.F386F 0.10 TCGA-EB-A3Y6-01 16 62055335 62055335 G A CDH8 5'UTR 0.32 TCGA-EB-A3Y6-01 16 67679942 67679942 C T RLTPR Silent p.L70L 0.22 TCGA-EB-A3Y6-01 16 68055781 68055781 G A DDX28 Missense_Mutation p.S442F 0.45 deleterious(0.02) possibly_damaging(0.811) TCGA-EB-A3Y6-01 16 69370420 69370420 G A COG8 Silent p.I191I 0.28 TCGA-EB-A3Y6-01 16 71674371 71674371 G A MARVELD3 Missense_Mutation p.G225E 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 16 72094051 72094051 G A HP Silent p.R161R 0.15 TCGA-EB-A3Y6-01 16 72120625 72120625 G A TXNL4B Nonsense_Mutation p.R121* 0.10 TCGA-EB-A3Y6-01 16 74425410 74425410 C T NPIPB15 Missense_Mutation p.S255F 0.13 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-EB-A3Y6-01 16 75276752 75276752 G A BCAR1 Silent p.A129A 0.38 TCGA-EB-A3Y6-01 16 75690133 75690133 T A TERF2IP Missense_Mutation p.I275K 0.14 deleterious(0.02) possibly_damaging(0.626) TCGA-EB-A3Y6-01 16 77334194 77334194 G A ADAMTS18 Silent p.I880I 0.16 TCGA-EB-A3Y6-01 16 78064434 78064434 C T CLEC3A Missense_Mutation p.S106F 0.20 deleterious(0) possibly_damaging(0.847) TCGA-EB-A3Y6-01 16 78064435 78064435 C T CLEC3A Silent p.S106S 0.19 TCGA-EB-A3Y6-01 16 84255852 84255852 C T KCNG4 Missense_Mutation p.G511S 0.33 tolerated_low_confidence(0.07) benign(0.028) TCGA-EB-A3Y6-01 16 89294994 89294994 C T ZNF778 3'UTR 0.21 TCGA-EB-A3Y6-01 16 9862753 9862753 C T GRIN2A Silent p.T850T 0.34 TCGA-EB-A3Y6-01 17 16703539 16703539 G A CCDC144A 3'UTR 0.18 TCGA-EB-A3Y6-01 17 17039616 17039616 C T MPRIP Silent p.V196V 0.32 TCGA-EB-A3Y6-01 17 17116861 17116861 G A FLCN 3'UTR 0.24 TCGA-EB-A3Y6-01 17 18638797 18638797 C T TRIM16L 3'UTR 0.33 TCGA-EB-A3Y6-01 17 21201746 21201746 A G MAP2K3 Missense_Mutation p.D24G 0.15 tolerated(0.89) benign(0) TCGA-EB-A3Y6-01 17 26958619 26958619 G A KIAA0100 Silent p.L1393L 0.33 TCGA-EB-A3Y6-01 17 26958620 26958620 G A KIAA0100 Silent p.H1392H 0.33 TCGA-EB-A3Y6-01 17 27613933 27613933 C T NUFIP2 Missense_Mutation p.S360N 0.27 deleterious(0) possibly_damaging(0.776) TCGA-EB-A3Y6-01 17 3301182 3301182 G A OR1E1 Missense_Mutation p.P175S 0.30 deleterious(0.04) benign(0.183) TCGA-EB-A3Y6-01 17 37949143 37949143 C T IKZF3 Silent p.E69E 0.30 TCGA-EB-A3Y6-01 17 38640851 38640851 C A TNS4 Silent p.L462L 0.26 TCGA-EB-A3Y6-01 17 38813728 38813728 C T KRT222 Missense_Mutation p.E179K 0.21 tolerated(0.15) benign(0.027) TCGA-EB-A3Y6-01 17 38978543 38978543 C T KRT10 Missense_Mutation p.G99R 0.28 tolerated_low_confidence(0.15) unknown(0) TCGA-EB-A3Y6-01 17 38990881 38990881 C T TMEM99 Missense_Mutation p.S38L 0.24 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EB-A3Y6-01 17 39036430 39036430 G T KRT20 Silent p.I238I 0.08 TCGA-EB-A3Y6-01 17 39564933 39564933 C A AC003958.2 RNA 0.47 TCGA-EB-A3Y6-01 17 40169564 40169564 C T NKIRAS2 5'UTR 0.30 TCGA-EB-A3Y6-01 17 40343052 40343052 G A GHDC Missense_Mutation p.R356C 0.21 tolerated(0.1) benign(0.013) TCGA-EB-A3Y6-01 17 40343053 40343053 G A GHDC Silent p.D355D 0.21 TCGA-EB-A3Y6-01 17 40343103 40343103 G A GHDC Missense_Mutation p.L339F 0.17 tolerated(0.13) possibly_damaging(0.521) TCGA-EB-A3Y6-01 17 40343104 40343104 G A GHDC Silent p.L338L 0.18 TCGA-EB-A3Y6-01 17 42248167 42248167 G A ASB16 Missense_Mutation p.E4K 0.33 tolerated(0.11) benign(0.006) TCGA-EB-A3Y6-01 17 44060866 44060866 C T MAPT Silent p.S232S 0.27 TCGA-EB-A3Y6-01 17 44626486 44626486 C G LRRC37A2 Silent p.V1327V 0.16 TCGA-EB-A3Y6-01 17 48678173 48678173 C T CACNA1G Silent p.F1259F 0.42 TCGA-EB-A3Y6-01 17 48741442 48741442 G A ABCC3 Silent p.Q436Q 0.32 TCGA-EB-A3Y6-01 17 5286426 5286426 G A RABEP1 Missense_Mutation p.E833K 0.32 deleterious(0) possibly_damaging(0.64) TCGA-EB-A3Y6-01 17 5286563 5286563 C T RABEP1 3'UTR 0.42 TCGA-EB-A3Y6-01 17 54403620 54403620 G A ANKFN1 Missense_Mutation p.S34N 0.29 tolerated_low_confidence(0.43) benign(0) TCGA-EB-A3Y6-01 17 5461997 5461997 G A NLRP1 Silent p.F673F 0.21 TCGA-EB-A3Y6-01 17 54981663 54981663 C T TRIM25 Missense_Mutation p.E294K 0.31 tolerated(0.15) benign(0.046) TCGA-EB-A3Y6-01 17 59465979 59465979 G A BCAS3 Intron 0.33 TCGA-EB-A3Y6-01 17 6014093 6014093 A T WSCD1 Missense_Mutation p.T338S 0.26 tolerated(0.64) benign(0.348) TCGA-EB-A3Y6-01 17 60754833 60754833 C T MRC2 Missense_Mutation p.R680W 0.11 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y6-01 17 61914872 61914872 G A SMARCD2 Silent p.T110T 0.05 TCGA-EB-A3Y6-01 17 62121441 62121441 G A ERN1 Silent p.A947A 0.30 TCGA-EB-A3Y6-01 17 62495953 62495953 C T DDX5 3'UTR 0.42 TCGA-EB-A3Y6-01 17 63223508 63223508 C T RGS9 Missense_Mutation p.P670S 0.33 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EB-A3Y6-01 17 63223509 63223509 C T RGS9 Missense_Mutation p.P670L 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EB-A3Y6-01 17 64212974 64212974 G A APOH Missense_Mutation p.S239F 0.32 tolerated(0.14) benign(0.018) TCGA-EB-A3Y6-01 17 6493230 6493230 G A KIAA0753 Silent p.G885G 0.20 TCGA-EB-A3Y6-01 17 67305454 67305454 G A ABCA5 Missense_Mutation p.R140C 0.22 deleterious(0) probably_damaging(0.991) TCGA-EB-A3Y6-01 17 71410883 71410883 G A SDK2 Missense_Mutation p.P795L 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 17 72308294 72308294 G A DNAI2 Silent p.E549E 0.42 TCGA-EB-A3Y6-01 17 7351964 7351964 G A CHRNB1 Missense_Mutation p.G226E 0.32 tolerated(0.92) benign(0.024) TCGA-EB-A3Y6-01 17 73745120 73745120 G A ITGB4 Missense_Mutation p.D1104N 0.38 deleterious(0.01) benign(0.005) TCGA-EB-A3Y6-01 17 7483543 7483543 G A CD68 Silent p.E155E 0.25 TCGA-EB-A3Y6-01 17 74936505 74936505 C T MGAT5B Missense_Mutation p.P545S 0.13 deleterious(0) probably_damaging(0.988) TCGA-EB-A3Y6-01 17 75212861 75212861 C T SEC14L1 3'UTR 0.44 TCGA-EB-A3Y6-01 17 75316260 75316260 G C SEPT9 Intron 0.29 TCGA-EB-A3Y6-01 17 7605013 7605013 G A WRAP53 Silent p.P287P 0.27 TCGA-EB-A3Y6-01 17 7689558 7689558 C T DNAH2 Silent p.I2082I 0.28 TCGA-EB-A3Y6-01 17 79077473 79077473 C T BAIAP2 Missense_Mutation p.P272S 0.28 tolerated(0.34) possibly_damaging(0.607) TCGA-EB-A3Y6-01 17 79077474 79077474 C T BAIAP2 Missense_Mutation p.P272L 0.27 deleterious(0.02) probably_damaging(0.966) TCGA-EB-A3Y6-01 17 79207165 79207165 G A ENTHD2 Intron 0.22 TCGA-EB-A3Y6-01 17 79207166 79207166 G A ENTHD2 Intron 0.22 TCGA-EB-A3Y6-01 17 80915356 80915356 G A B3GNTL1 Missense_Mutation p.T247I 0.50 tolerated(0.16) benign(0.005) TCGA-EB-A3Y6-01 17 9843463 9843463 G A GAS7 Silent p.S262S 0.32 TCGA-EB-A3Y6-01 17 9843464 9843464 G A GAS7 Missense_Mutation p.S262F 0.33 deleterious(0.03) possibly_damaging(0.878) TCGA-EB-A3Y6-01 18 14542906 14542906 C A POTEC Silent p.V80V 0.04 TCGA-EB-A3Y6-01 18 21739436 21739436 C T CABYR Missense_Mutation p.A181V 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A3Y6-01 18 22669461 22669461 G A ZNF521 Missense_Mutation p.P1292S 0.39 tolerated(0.49) benign(0) TCGA-EB-A3Y6-01 18 22932090 22932090 C T ZNF521 5'UTR 0.36 TCGA-EB-A3Y6-01 18 29055985 29055985 C T DSG3 Missense_Mutation p.S921F 0.28 deleterious(0.01) benign(0.229) TCGA-EB-A3Y6-01 18 45555837 45555837 C T ZBTB7C Missense_Mutation p.E552K 0.45 deleterious_low_confidence(0.03) benign(0.015) TCGA-EB-A3Y6-01 18 47405404 47405404 C T MYO5B Missense_Mutation p.E1063K 0.41 deleterious(0.01) possibly_damaging(0.507) TCGA-EB-A3Y6-01 18 47405405 47405405 C T MYO5B Silent p.E1062E 0.42 TCGA-EB-A3Y6-01 18 47432962 47432962 G A MYO5B Silent p.F747F 0.20 TCGA-EB-A3Y6-01 18 61383326 61383326 G A SERPINB11 Missense_Mutation p.E139K 0.32 tolerated(0.78) benign(0.015) TCGA-EB-A3Y6-01 18 61597295 61597295 C T SERPINB10 Silent p.L169L 0.45 TCGA-EB-A3Y6-01 18 72999725 72999725 C T TSHZ1 Missense_Mutation p.P743L 0.40 deleterious(0.05) benign(0.005) TCGA-EB-A3Y6-01 18 77105512 77105512 C T ATP9B Nonsense_Mutation p.Q853* 0.22 TCGA-EB-A3Y6-01 18 77896482 77896482 C T ADNP2 Silent p.F1062F 0.32 TCGA-EB-A3Y6-01 18 9258430 9258430 C T ANKRD12 Missense_Mutation p.A1722V 0.34 tolerated_low_confidence(0.05) benign(0.003) TCGA-EB-A3Y6-01 18 9263815 9263815 C T ANKRD12 Missense_Mutation p.P1898S 0.13 deleterious(0.01) probably_damaging(0.95) TCGA-EB-A3Y6-01 19 10394406 10394406 C T ICAM1 Missense_Mutation p.P194L 0.11 deleterious(0.01) benign(0.376) TCGA-EB-A3Y6-01 19 10461444 10461444 G A TYK2 3'UTR 0.22 TCGA-EB-A3Y6-01 19 12542545 12542545 C T ZNF443 Silent p.G147G 0.35 TCGA-EB-A3Y6-01 19 12638571 12638571 G A ZNF564 Silent p.S117S 0.28 TCGA-EB-A3Y6-01 19 13186432 13186432 C T NFIX Missense_Mutation p.S301F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 19 16025445 16025445 G A CYP4F11 Silent p.I427I 0.24 TCGA-EB-A3Y6-01 19 16034682 16034682 G A CYP4F11 Silent p.F286F 0.26 TCGA-EB-A3Y6-01 19 17322951 17322951 C T MYO9B 3'UTR 0.36 TCGA-EB-A3Y6-01 19 18499390 18499390 G A GDF15 Missense_Mutation p.G191E 0.19 tolerated(0.09) benign(0.109) TCGA-EB-A3Y6-01 19 18971692 18971692 G A UPF1 Silent p.K786K 0.42 TCGA-EB-A3Y6-01 19 20807848 20807848 G A ZNF626 Missense_Mutation p.H279Y 0.10 deleterious(0.02) probably_damaging(0.964) TCGA-EB-A3Y6-01 19 21606572 21606572 C T ZNF493 Missense_Mutation p.H371Y 0.11 deleterious(0) probably_damaging(0.912) TCGA-EB-A3Y6-01 19 2226890 2226890 C T DOT1L Missense_Mutation p.S1457F 0.45 deleterious_low_confidence(0) benign(0.444) TCGA-EB-A3Y6-01 19 2827652 2827652 C T ZNF554 Missense_Mutation p.S55F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 19 34263943 34263943 C T CHST8 Missense_Mutation p.S417F 0.35 deleterious(0) probably_damaging(0.981) TCGA-EB-A3Y6-01 19 34263944 34263944 C T CHST8 Silent p.S417S 0.35 TCGA-EB-A3Y6-01 19 36205636 36205636 G A ZBTB32 Silent p.G36G 0.34 TCGA-EB-A3Y6-01 19 37004998 37004998 G A ZNF260 Silent p.I381I 0.20 TCGA-EB-A3Y6-01 19 38958341 38958341 G A RYR1 Silent p.E1090E 0.34 TCGA-EB-A3Y6-01 19 41010021 41010021 C T SPTBN4 Silent p.D549D 0.25 TCGA-EB-A3Y6-01 19 43680100 43680100 C T PSG5 Missense_Mutation p.E211K 0.25 deleterious(0.01) possibly_damaging(0.689) TCGA-EB-A3Y6-01 19 44681407 44681407 C T ZNF226 Silent p.V664V 0.06 TCGA-EB-A3Y6-01 19 44933628 44933628 C T ZNF229 Missense_Mutation p.C443Y 0.20 tolerated(0.52) benign(0.001) TCGA-EB-A3Y6-01 19 46842910 46842910 C T HIF3A 3'UTR 0.25 TCGA-EB-A3Y6-01 19 47285696 47285696 G A SLC1A5 Silent p.I256I 0.31 TCGA-EB-A3Y6-01 19 49845809 49845809 G A TEAD2 Silent p.Y376Y 0.29 TCGA-EB-A3Y6-01 19 50265290 50265290 G A TSKS Missense_Mutation p.P124S 0.36 tolerated(0.18) benign(0.015) TCGA-EB-A3Y6-01 19 51650496 51650496 G A SIGLEC7 Silent p.K381K 0.18 TCGA-EB-A3Y6-01 19 52723474 52723474 C T PPP2R1A Silent p.S445S 0.22 TCGA-EB-A3Y6-01 19 53058501 53058501 C T ZNF808 Missense_Mutation p.L778F 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3Y6-01 19 53761859 53761859 C T VN1R2 Silent p.V77V 0.36 TCGA-EB-A3Y6-01 19 5455650 5455650 A T ZNRF4 Nonsense_Mutation p.K50* 0.35 TCGA-EB-A3Y6-01 19 5456251 5456251 C A ZNRF4 Missense_Mutation p.P250H 0.17 deleterious(0) possibly_damaging(0.625) TCGA-EB-A3Y6-01 19 55496482 55496482 G A NLRP2 Missense_Mutation p.D700N 0.22 tolerated(1) benign(0) TCGA-EB-A3Y6-01 19 55670677 55670677 G T DNAAF3 Nonsense_Mutation p.S527* 0.23 TCGA-EB-A3Y6-01 19 55865856 55865856 C T COX6B2 Missense_Mutation p.G12R 0.29 tolerated(0.49) benign(0.014) TCGA-EB-A3Y6-01 19 56539567 56539567 C T NLRP5 Silent p.P656P 0.15 TCGA-EB-A3Y6-01 19 57910085 57910085 C T ZNF548 Missense_Mutation p.H156Y 0.22 tolerated(0.16) benign(0.243) TCGA-EB-A3Y6-01 19 6182826 6182826 G T ACSBG2 Missense_Mutation p.W324L 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 19 6477418 6477418 C T DENND1C Missense_Mutation p.G140R 0.23 tolerated(0.36) benign(0.034) TCGA-EB-A3Y6-01 19 9047822 9047822 G A MUC16 Missense_Mutation p.P11270L 0.10 benign(0.003) TCGA-EB-A3Y6-01 19 9069347 9069347 G A MUC16 Silent p.S6033S 0.24 TCGA-EB-A3Y6-01 19 9325344 9325344 G A OR7D4 Missense_Mutation p.T57I 0.37 deleterious(0.03) benign(0.029) TCGA-EB-A3Y6-01 19 9578849 9578849 G A ZNF560 Silent p.T258T 0.21 TCGA-EB-A3Y6-01 1 101196829 101196829 T C VCAM1 Missense_Mutation p.V427A 0.15 deleterious(0.04) benign(0.321) TCGA-EB-A3Y6-01 1 103380274 103380274 G A COL11A1 Missense_Mutation p.P1304S 0.10 unknown(0) TCGA-EB-A3Y6-01 1 10364378 10364379 - C KIF1B Intron 0.35 TCGA-EB-A3Y6-01 1 109735360 109735360 C T KIAA1324 Missense_Mutation p.S604F 0.12 deleterious(0) possibly_damaging(0.599) TCGA-EB-A3Y6-01 1 113063098 113063098 C T WNT2B Silent p.A381A 0.29 TCGA-EB-A3Y6-01 1 113063099 113063099 C T WNT2B Missense_Mutation p.P382S 0.29 tolerated(0.05) benign(0.086) TCGA-EB-A3Y6-01 1 114354840 114354840 C T RSBN1 Silent p.Q65Q 0.11 TCGA-EB-A3Y6-01 1 115168201 115168201 C T DENND2C Silent p.E135E 0.16 TCGA-EB-A3Y6-01 1 120295927 120295927 G A HMGCS2 Nonsense_Mutation p.R424* 0.48 TCGA-EB-A3Y6-01 1 120307048 120307048 G A HMGCS2 Silent p.I102I 0.38 TCGA-EB-A3Y6-01 1 120437169 120437169 G A ADAM30 Silent p.P597P 0.11 TCGA-EB-A3Y6-01 1 14106678 14106678 C T PRDM2 Silent p.S796S 0.40 TCGA-EB-A3Y6-01 1 142713786 142713786 C T RP11-417J8.6 RNA 0.30 TCGA-EB-A3Y6-01 1 145811903 145811903 G A GPR89A Silent p.I102I 0.15 TCGA-EB-A3Y6-01 1 148594470 148594470 C T NBPF15 Missense_Mutation p.P615S 0.47 tolerated(0.18) probably_damaging(0.984) TCGA-EB-A3Y6-01 1 150443860 150443860 C T RPRD2 Silent p.S812S 0.24 TCGA-EB-A3Y6-01 1 150445153 150445153 C T RPRD2 Silent p.P1243P 0.05 TCGA-EB-A3Y6-01 1 150902515 150902515 C T SETDB1 Silent p.S111S 0.45 TCGA-EB-A3Y6-01 1 152129231 152129231 C T RPTN Missense_Mutation p.G115E 0.20 tolerated(1) benign(0.009) TCGA-EB-A3Y6-01 1 152279738 152279738 C T FLG Missense_Mutation p.D2542N 0.17 benign(0.293) TCGA-EB-A3Y6-01 1 152328601 152328601 G A FLG2 Missense_Mutation p.S554F 0.18 unknown(0) TCGA-EB-A3Y6-01 1 153042988 153042988 C T SPRR2B 3'UTR 0.15 TCGA-EB-A3Y6-01 1 153346217 153346217 C T S100A12 3'UTR 0.14 TCGA-EB-A3Y6-01 1 153346218 153346218 C T S100A12 3'UTR 0.14 TCGA-EB-A3Y6-01 1 153963240 153963240 T G RPS27 5'UTR 0.15 TCGA-EB-A3Y6-01 1 155005966 155005966 C T DCST2 Missense_Mutation p.G71E 0.55 deleterious(0) possibly_damaging(0.907) TCGA-EB-A3Y6-01 1 156085021 156085021 G A LMNA Silent p.L104L 0.20 TCGA-EB-A3Y6-01 1 156848954 156848954 G A NTRK1 Missense_Mutation p.D616N 0.27 tolerated(0.5) benign(0.328) TCGA-EB-A3Y6-01 1 156879582 156879582 G A PEAR1 Missense_Mutation p.G484E 0.20 deleterious(0) probably_damaging(0.991) TCGA-EB-A3Y6-01 1 157805847 157805847 C T CD5L Missense_Mutation p.G52S 0.52 tolerated(0.09) probably_damaging(0.924) TCGA-EB-A3Y6-01 1 158450321 158450321 G A OR10R2 Silent p.V218V 0.22 TCGA-EB-A3Y6-01 1 158549503 158549503 C T OR10X1 Missense_Mutation p.G63S 0.46 tolerated(0.27) benign(0.024) TCGA-EB-A3Y6-01 1 158597458 158597458 C T SPTA1 Missense_Mutation p.R1874Q 0.48 deleterious(0.02) benign(0.025) TCGA-EB-A3Y6-01 1 158644451 158644451 G A SPTA1 Missense_Mutation p.S376L 0.19 tolerated(1) benign(0.002) TCGA-EB-A3Y6-01 1 15886035 15886035 G A DNAJC16 Silent p.K346K 0.11 TCGA-EB-A3Y6-01 1 159558206 159558206 G A APCS Nonsense_Mutation p.W127* 0.17 TCGA-EB-A3Y6-01 1 160797649 160797649 G A LY9 3'UTR 0.38 TCGA-EB-A3Y6-01 1 161514565 161514565 C T FCGR3A Missense_Mutation p.G204D 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 1 16261343 16261343 G A SPEN Missense_Mutation p.G2870S 0.17 probably_damaging(0.989) TCGA-EB-A3Y6-01 1 165324800 165324800 C T LMX1A 5'UTR 0.19 TCGA-EB-A3Y6-01 1 168282176 168282176 C T TBX19 Missense_Mutation p.P428L 0.05 tolerated_low_confidence(0.1) benign(0) TCGA-EB-A3Y6-01 1 169572424 169572424 G A SELP Silent p.S515S 0.14 TCGA-EB-A3Y6-01 1 169951956 169951956 A T KIFAP3 Missense_Mutation p.F520Y 0.55 tolerated(0.17) possibly_damaging(0.543) TCGA-EB-A3Y6-01 1 17331219 17331219 G A ATP13A2 Missense_Mutation p.H149Y 0.10 tolerated(0.27) benign(0.021) TCGA-EB-A3Y6-01 1 175086245 175086245 C T TNN Silent p.L764L 0.23 TCGA-EB-A3Y6-01 1 175360568 175360568 C T TNR Missense_Mutation p.E455K 0.29 deleterious(0.03) possibly_damaging(0.902) TCGA-EB-A3Y6-01 1 176833374 176833374 C T ASTN1 3'UTR 0.07 TCGA-EB-A3Y6-01 1 176857236 176857236 G T ASTN1 Silent p.L1015L 0.09 TCGA-EB-A3Y6-01 1 177250615 177250615 C T BRINP2 Missense_Mutation p.S768F 0.08 deleterious(0) benign(0.188) TCGA-EB-A3Y6-01 1 186880444 186880444 A C PLA2G4A Silent p.R161R 0.42 TCGA-EB-A3Y6-01 1 197008366 197008366 G A F13B 3'UTR 0.44 TCGA-EB-A3Y6-01 1 197390355 197390355 G A CRB1 Missense_Mutation p.G466E 0.53 tolerated(0.07) possibly_damaging(0.651) TCGA-EB-A3Y6-01 1 201186493 201186493 G A IGFN1 Missense_Mutation p.R3225Q 0.24 benign(0.163) TCGA-EB-A3Y6-01 1 202572213 202572213 C T SYT2 Missense_Mutation p.G127R 0.20 tolerated(0.49) benign(0.255) TCGA-EB-A3Y6-01 1 203025619 203025619 C T PPFIA4 Silent p.S235S 0.16 TCGA-EB-A3Y6-01 1 204167551 204167551 C T GOLT1A 3'UTR 0.41 TCGA-EB-A3Y6-01 1 205886448 205886448 G A SLC26A9 Missense_Mutation p.S764L 0.18 tolerated_low_confidence(0.08) benign(0.003) TCGA-EB-A3Y6-01 1 206328847 206328847 C T CTSE Missense_Mutation p.P305L 0.14 tolerated(0.08) benign(0.002) TCGA-EB-A3Y6-01 1 20979418 20979418 G A DDOST Missense_Mutation p.P347L 0.38 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 1 20979419 20979419 G A DDOST Missense_Mutation p.P347S 0.38 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y6-01 1 210016822 210016822 T C DIEXF Missense_Mutation p.L603S 0.16 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 1 210411442 210411442 C T SERTAD4 Missense_Mutation p.P46L 0.40 tolerated(0.13) benign(0.007) TCGA-EB-A3Y6-01 1 211847733 211847733 C T NEK2 Silent p.R73R 0.41 TCGA-EB-A3Y6-01 1 213032166 213032166 G A FLVCR1 Silent p.Q124Q 0.34 TCGA-EB-A3Y6-01 1 21546387 21546387 G A ECE1 3'UTR 0.64 TCGA-EB-A3Y6-01 1 215955511 215955511 C T USH2A Missense_Mutation p.R3538Q 0.11 possibly_damaging(0.491) TCGA-EB-A3Y6-01 1 217822300 217822300 C T SPATA17 Missense_Mutation p.R49W 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 1 223165399 223165399 A G DISP1 Missense_Mutation p.K279R 0.09 tolerated(0.43) benign(0.033) TCGA-EB-A3Y6-01 1 223178203 223178203 C T DISP1 Missense_Mutation p.S1155F 0.36 deleterious(0.01) possibly_damaging(0.555) TCGA-EB-A3Y6-01 1 225594435 225594435 C T LBR Missense_Mutation p.A472T 0.28 tolerated(0.07) probably_damaging(1) TCGA-EB-A3Y6-01 1 230825826 230825826 G C COG2 Missense_Mutation p.G621R 0.14 tolerated(0.09) benign(0.013) TCGA-EB-A3Y6-01 1 231664520 231664520 T G TSNAX 5'UTR 0.27 TCGA-EB-A3Y6-01 1 233750080 233750080 G A KCNK1 Missense_Mutation p.E55K 0.54 deleterious(0) benign(0.035) TCGA-EB-A3Y6-01 1 240071669 240071669 G A CHRM3 Silent p.R306R 0.41 TCGA-EB-A3Y6-01 1 240374458 240374458 G A FMN2 Missense_Mutation p.E1330K 0.16 possibly_damaging(0.573) TCGA-EB-A3Y6-01 1 241099944 241099944 G A RGS7 Missense_Mutation p.H97Y 0.38 deleterious(0) probably_damaging(0.946) TCGA-EB-A3Y6-01 1 24706253 24706255 ATG TA STPG1 Frame_Shift_Del p.P117Lfs*24 0.21 TCGA-EB-A3Y6-01 1 247150352 247150352 C G ZNF695 Missense_Mutation p.E489Q 0.37 deleterious(0.03) benign(0.429) TCGA-EB-A3Y6-01 1 247835492 247835492 C T OR13G1 Silent p.P284P 0.15 TCGA-EB-A3Y6-01 1 248039845 248039845 G A TRIM58 3'UTR 0.65 TCGA-EB-A3Y6-01 1 248059676 248059676 G A OR2W3 Missense_Mutation p.G263E 0.16 tolerated(0.12) possibly_damaging(0.72) TCGA-EB-A3Y6-01 1 248112298 248112298 C T OR2L8 Missense_Mutation p.L47F 0.13 deleterious(0.01) possibly_damaging(0.856) TCGA-EB-A3Y6-01 1 248343404 248343404 C T OR2M2 Silent p.F39F 0.39 TCGA-EB-A3Y6-01 1 248685744 248685744 G A OR2G6 Missense_Mutation p.R266K 0.54 tolerated(0.19) benign(0.005) TCGA-EB-A3Y6-01 1 26073252 26073252 G A MAN1C1 Missense_Mutation p.G244E 0.37 tolerated(1) benign(0) TCGA-EB-A3Y6-01 1 27278461 27278461 G A C1orf172 Silent p.S137S 0.11 TCGA-EB-A3Y6-01 1 33236440 33236440 C T KIAA1522 Missense_Mutation p.P554S 0.17 tolerated(1) unknown(0) TCGA-EB-A3Y6-01 1 33960280 33960280 C T ZSCAN20 Missense_Mutation p.S779F 0.13 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 1 35334325 35334325 G A DLGAP3 Missense_Mutation p.S789F 0.50 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y6-01 1 40777365 40777365 G A COL9A2 Missense_Mutation p.P147L 0.09 tolerated(0.13) unknown(0) TCGA-EB-A3Y6-01 1 43002250 43002250 A G CCDC30 Missense_Mutation p.K32R 0.09 tolerated(0.07) benign(0.35) TCGA-EB-A3Y6-01 1 47398436 47398436 G A CYP4A11 Missense_Mutation p.S454L 0.14 deleterious(0.02) benign(0.052) TCGA-EB-A3Y6-01 1 53458975 53458975 C T SCP2 Intron 0.44 TCGA-EB-A3Y6-01 1 53972184 53972184 C T GLIS1 3'UTR 0.56 TCGA-EB-A3Y6-01 1 53972226 53972226 G A GLIS1 3'UTR 0.25 TCGA-EB-A3Y6-01 1 56990214 56990214 C T PPAP2B Missense_Mutation p.E104K 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 1 57185232 57185232 G A C1orf168 3'UTR 0.55 TCGA-EB-A3Y6-01 1 75102049 75102049 G A C1orf173 Missense_Mutation p.P173L 0.11 tolerated(0.09) benign(0.014) TCGA-EB-A3Y6-01 1 85424379 85424379 G A MCOLN2 Missense_Mutation p.R82C 0.12 deleterious(0.05) benign(0.014) TCGA-EB-A3Y6-01 1 89735313 89735313 A G GBP5 Intron 0.16 TCGA-EB-A3Y6-01 1 9801249 9801249 C T CLSTN1 Silent p.V474V 0.26 TCGA-EB-A3Y6-01 20 18574378 18574378 G A DTD1 Missense_Mutation p.G16E 0.10 tolerated(0.3) possibly_damaging(0.758) TCGA-EB-A3Y6-01 20 25405940 25405940 C T GINS1 Missense_Mutation p.P142S 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y6-01 20 25456969 25456969 C T NINL Nonsense_Mutation p.W986* 0.33 TCGA-EB-A3Y6-01 20 2847343 2847343 G A VPS16 3'UTR 0.26 TCGA-EB-A3Y6-01 20 30419615 30419615 G A MYLK2 Missense_Mutation p.E512K 0.28 deleterious(0) probably_damaging(0.987) TCGA-EB-A3Y6-01 20 30897927 30897927 G A KIF3B Missense_Mutation p.R116K 0.38 tolerated(0.19) benign(0.319) TCGA-EB-A3Y6-01 20 3146945 3146945 G A LZTS3 Missense_Mutation p.S174F 0.20 deleterious(0) probably_damaging(0.962) TCGA-EB-A3Y6-01 20 31625434 31625434 C T BPIFB6 Missense_Mutation p.P246S 0.27 tolerated(0.08) probably_damaging(0.952) TCGA-EB-A3Y6-01 20 31643310 31643310 G A BPIFB3 Silent p.T27T 0.34 TCGA-EB-A3Y6-01 20 31643311 31643311 G A BPIFB3 Missense_Mutation p.V28M 0.34 deleterious(0.04) benign(0.17) TCGA-EB-A3Y6-01 20 33568985 33568985 G A MYH7B Intron 0.33 TCGA-EB-A3Y6-01 20 35060148 35060148 C T DLGAP4 Missense_Mutation p.R10C 0.34 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y6-01 20 41306773 41306773 C T PTPRT Missense_Mutation p.E296K 0.26 tolerated(0.08) probably_damaging(0.948) TCGA-EB-A3Y6-01 20 42331466 42331466 C T MYBL2 Silent p.L430L 0.11 TCGA-EB-A3Y6-01 20 43836434 43836434 C T SEMG1 Silent p.L166L 0.24 TCGA-EB-A3Y6-01 20 43932896 43932896 G A MATN4 Silent p.F205F 0.31 TCGA-EB-A3Y6-01 20 46365660 46365660 G A SULF2 Missense_Mutation p.R68W 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y6-01 20 47990929 47990929 C T KCNB1 Missense_Mutation p.G390R 0.08 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 20 49493110 49493110 C T BCAS4 3'UTR 0.06 TCGA-EB-A3Y6-01 20 55982761 55982761 C T RBM38 Silent p.A193A 0.29 TCGA-EB-A3Y6-01 20 58496393 58496393 A G SYCP2 Missense_Mutation p.F47S 0.45 deleterious(0.01) possibly_damaging(0.806) TCGA-EB-A3Y6-01 20 61391529 61391529 G A NTSR1 Silent p.R389R 0.10 TCGA-EB-A3Y6-01 20 62292766 62292766 C T RTEL1 Missense_Mutation p.A73V 0.30 deleterious(0.05) benign(0.251) TCGA-EB-A3Y6-01 20 62292767 62292767 C T RTEL1 Silent p.A73A 0.32 TCGA-EB-A3Y6-01 20 62729389 62729389 C T OPRL1 Silent p.I156I 0.32 TCGA-EB-A3Y6-01 20 9351884 9351884 G A PLCB4 Missense_Mutation p.G176E 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 21 33974685 33974685 G A AP000275.65 Intron 0.23 TCGA-EB-A3Y6-01 21 37602855 37602855 C T DOPEY2 Silent p.I591I 0.37 TCGA-EB-A3Y6-01 21 39755571 39755571 G A ERG Silent p.A405A 0.26 TCGA-EB-A3Y6-01 21 40604331 40604331 T C BRWD1 Missense_Mutation p.K954E 0.44 deleterious(0) benign(0.049) TCGA-EB-A3Y6-01 21 43496189 43496189 T C UMODL1 Missense_Mutation p.V51A 0.32 tolerated(0.07) benign(0.294) TCGA-EB-A3Y6-01 21 45860722 45860722 C T TRPM2 Silent p.I1440I 0.32 TCGA-EB-A3Y6-01 21 45978081 45978081 G T KRTAP10-3 Missense_Mutation p.P173H 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 21 46875638 46875638 C T COL18A1 Missense_Mutation p.T65I 0.28 unknown(0) TCGA-EB-A3Y6-01 22 19118936 19118936 G A TSSK2 Silent p.R8R 0.47 TCGA-EB-A3Y6-01 22 20457974 20457974 C A RIMBP3 Missense_Mutation p.V1110L 0.10 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 22 21328842 21328842 T C AIFM3 Missense_Mutation p.V180A 0.08 tolerated(0.75) benign(0.002) TCGA-EB-A3Y6-01 22 21800972 21800972 C T HIC2 Silent p.G596G 0.07 TCGA-EB-A3Y6-01 22 26346369 26346369 C T MYO18B Silent p.L1929L 0.43 TCGA-EB-A3Y6-01 22 32097668 32097668 G A PRR14L Silent p.T2027T 0.56 TCGA-EB-A3Y6-01 22 35481767 35481767 G A ISX 3'UTR 0.33 TCGA-EB-A3Y6-01 22 39388517 39388517 C T APOBEC3B 3'UTR 0.14 TCGA-EB-A3Y6-01 22 42605941 42605941 G A TCF20 Missense_Mutation p.R1791C 0.16 possibly_damaging(0.518) TCGA-EB-A3Y6-01 22 43616546 43616546 T A SCUBE1 Nonsense_Mutation p.K533* 0.10 TCGA-EB-A3Y6-01 22 50485644 50485644 C T TTLL8 Missense_Mutation p.D152N 0.20 deleterious(0.04) possibly_damaging(0.842) TCGA-EB-A3Y6-01 2 103053675 103053675 G A IL18RAP Missense_Mutation p.G195R 0.21 deleterious(0) probably_damaging(0.986) TCGA-EB-A3Y6-01 2 107446526 107446526 G A ST6GAL2 Silent p.F438F 0.25 TCGA-EB-A3Y6-01 2 107459984 107459984 G A ST6GAL2 Silent p.F150F 0.35 TCGA-EB-A3Y6-01 2 110322028 110322028 G A SEPT10 Missense_Mutation p.H315Y 0.38 deleterious(0) probably_damaging(0.919) TCGA-EB-A3Y6-01 2 111144819 111144819 C T LINC01106 5'Flank 0.13 TCGA-EB-A3Y6-01 2 112873726 112873726 A T TMEM87B 3'UTR 0.27 TCGA-EB-A3Y6-01 2 112940451 112940451 C T FBLN7 Missense_Mutation p.R252C 0.28 deleterious(0) possibly_damaging(0.88) TCGA-EB-A3Y6-01 2 113765571 113765571 G A IL36A Missense_Mutation p.E143K 0.31 tolerated(0.11) benign(0.088) TCGA-EB-A3Y6-01 2 113830306 113830306 G A IL1F10 5'UTR 0.09 TCGA-EB-A3Y6-01 2 118583901 118583901 C T DDX18 Silent p.A526A 0.40 TCGA-EB-A3Y6-01 2 1243537 1243537 C T SNTG2 Missense_Mutation p.P293S 0.41 tolerated(0.13) benign(0.004) TCGA-EB-A3Y6-01 2 133542749 133542749 G A NCKAP5 Silent p.P545P 0.30 TCGA-EB-A3Y6-01 2 135470881 135470881 C T TMEM163 Missense_Mutation p.E71K 0.31 tolerated(0.09) probably_damaging(0.986) TCGA-EB-A3Y6-01 2 137917887 137917887 G A THSD7B Missense_Mutation p.A492T 0.12 tolerated(0.12) possibly_damaging(0.682) TCGA-EB-A3Y6-01 2 137928454 137928454 G A THSD7B Missense_Mutation p.G557R 0.34 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A3Y6-01 2 138330037 138330037 G A THSD7B Missense_Mutation p.E1115K 0.30 deleterious(0.03) unknown(0) TCGA-EB-A3Y6-01 2 1507821 1507821 G A TPO Missense_Mutation p.E830K 0.39 tolerated(0.61) benign(0.036) TCGA-EB-A3Y6-01 2 158114551 158114551 A T GALNT5 5'UTR 0.27 TCGA-EB-A3Y6-01 2 163253416 163253416 G A KCNH7 Missense_Mutation p.A816V 0.36 tolerated(0.07) benign(0.285) TCGA-EB-A3Y6-01 2 166245961 166245961 G A SCN2A Missense_Mutation p.R1882Q 0.11 tolerated(0.05) probably_damaging(0.998) TCGA-EB-A3Y6-01 2 166894589 166894589 C T SCN1A Silent p.K881K 0.26 TCGA-EB-A3Y6-01 2 16740800 16740800 C T FAM49A Silent p.V255V 0.22 TCGA-EB-A3Y6-01 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.28 probably_damaging(0.999) TCGA-EB-A3Y6-01 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.28 probably_damaging(0.999) TCGA-EB-A3Y6-01 2 168106629 168106629 C T XIRP2 Silent p.V2909V 0.38 TCGA-EB-A3Y6-01 2 168115785 168115785 C A XIRP2 3'UTR 0.34 TCGA-EB-A3Y6-01 2 170066148 170066148 C T LRP2 Missense_Mutation p.R2095Q 0.29 benign(0.109) TCGA-EB-A3Y6-01 2 174223442 174223442 G A CDCA7 Silent p.Q8Q 0.33 TCGA-EB-A3Y6-01 2 179323290 179323290 C T DFNB59 Silent p.F201F 0.23 TCGA-EB-A3Y6-01 2 179323291 179323291 C T DFNB59 Missense_Mutation p.P202S 0.22 deleterious(0) possibly_damaging(0.686) TCGA-EB-A3Y6-01 2 179419273 179419273 C T TTN Missense_Mutation p.G29601R 0.14 TCGA-EB-A3Y6-01 2 179528071 179528071 C T TTN Missense_Mutation p.E12208K 0.25 TCGA-EB-A3Y6-01 2 179604946 179604946 C T TTN Silent p.Q4338Q 0.22 TCGA-EB-A3Y6-01 2 179616629 179616629 C T TTN Intron 0.30 TCGA-EB-A3Y6-01 2 179640361 179640361 G A TTN Missense_Mutation p.A2077V 0.35 TCGA-EB-A3Y6-01 2 179647693 179647693 G A TTN Silent p.D980D 0.22 TCGA-EB-A3Y6-01 2 185801948 185801948 G A ZNF804A Missense_Mutation p.E609K 0.21 tolerated(0.11) benign(0.001) TCGA-EB-A3Y6-01 2 189872299 189872299 G A COL3A1 Missense_Mutation p.G1110E 0.24 unknown(0) TCGA-EB-A3Y6-01 2 197081790 197081790 C A HECW2 Missense_Mutation p.R1479L 0.23 deleterious(0.03) possibly_damaging(0.801) TCGA-EB-A3Y6-01 2 198274577 198274577 G A SF3B1 Missense_Mutation p.P274L 0.30 deleterious(0.04) benign(0.004) TCGA-EB-A3Y6-01 2 198650799 198650799 G A BOLL 5'UTR 0.35 TCGA-EB-A3Y6-01 2 20403822 20403822 C T SDC1 Missense_Mutation p.E127K 0.30 tolerated(0.29) benign(0.284) TCGA-EB-A3Y6-01 2 204594378 204594378 C T CD28 Silent p.H139H 0.34 TCGA-EB-A3Y6-01 2 21225802 21225802 G A APOB Silent p.F4164F 0.28 TCGA-EB-A3Y6-01 2 217315660 217315660 C T SMARCAL1 Missense_Mutation p.S648F 0.33 deleterious(0) probably_damaging(0.948) TCGA-EB-A3Y6-01 2 220111842 220111842 C G STK16 Missense_Mutation p.T105R 0.43 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y6-01 2 223085957 223085957 G A PAX3 Silent p.P314P 0.32 TCGA-EB-A3Y6-01 2 227886864 227886864 C T COL4A4 Silent p.V1372V 0.16 TCGA-EB-A3Y6-01 2 227963492 227963492 G A COL4A4 Silent p.F374F 0.34 TCGA-EB-A3Y6-01 2 228163401 228163401 C T COL4A3 Missense_Mutation p.A1252V 0.11 unknown(0) TCGA-EB-A3Y6-01 2 228758521 228758521 G A DAW1 Missense_Mutation p.G110R 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 2 234601555 234601555 G A UGT1A6 5'UTR 0.27 TCGA-EB-A3Y6-01 2 237272523 237272523 G A IQCA1 Missense_Mutation p.T590I 0.31 deleterious(0) possibly_damaging(0.833) TCGA-EB-A3Y6-01 2 24194143 24194143 T G UBXN2A Intron 0.23 TCGA-EB-A3Y6-01 2 242062183 242062183 G A PASK Silent p.F1012F 0.27 TCGA-EB-A3Y6-01 2 25966697 25966697 C T ASXL2 Missense_Mutation p.G837S 0.22 tolerated_low_confidence(0.13) benign(0.033) TCGA-EB-A3Y6-01 2 29294555 29294555 G A C2orf71 Missense_Mutation p.S858F 0.23 tolerated(0.08) probably_damaging(0.919) TCGA-EB-A3Y6-01 2 37076681 37076681 G A STRN Missense_Mutation p.S754L 0.25 deleterious(0) probably_damaging(0.941) TCGA-EB-A3Y6-01 2 39931233 39931233 G A TMEM178A Missense_Mutation p.R138Q 0.44 deleterious(0.05) possibly_damaging(0.704) TCGA-EB-A3Y6-01 2 51254841 51254841 A C NRXN1 Missense_Mutation p.S191A 0.17 tolerated(0.22) benign(0.001) TCGA-EB-A3Y6-01 2 54081330 54081330 G A GPR75 Silent p.L188L 0.25 TCGA-EB-A3Y6-01 2 68882249 68882249 C T PROKR1 Silent p.F241F 0.06 TCGA-EB-A3Y6-01 2 69049603 69049603 C T ARHGAP25 Silent p.L444L 0.31 TCGA-EB-A3Y6-01 2 71650107 71650107 A C ZNF638 Missense_Mutation p.T1155P 0.31 tolerated(0.1) benign(0) TCGA-EB-A3Y6-01 2 74652829 74652829 G A WDR54 3'UTR 0.32 TCGA-EB-A3Y6-01 2 90193347 90193347 G A IGKV1D-13 Missense_Mutation p.D92N 0.22 deleterious(0.01) benign(0.17) TCGA-EB-A3Y6-01 2 98887257 98887257 G A VWA3B Missense_Mutation p.E986K 0.37 deleterious(0) possibly_damaging(0.899) TCGA-EB-A3Y6-01 3 10370631 10370631 G A ATP2B2 Missense_Mutation p.S1200L 0.27 tolerated_low_confidence(0.23) benign(0.1) TCGA-EB-A3Y6-01 3 111263892 111263892 G A CD96 Splice_Site p.X21_splice 0.26 TCGA-EB-A3Y6-01 3 111263893 111263893 G A CD96 Missense_Mutation p.G21E 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 3 113169284 113169284 G A SPICE1 Missense_Mutation p.A741V 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 3 115439805 115439805 C T GAP43 3'UTR 0.31 TCGA-EB-A3Y6-01 3 121491519 121491519 G A IQCB1 Silent p.A484A 0.10 TCGA-EB-A3Y6-01 3 121980842 121980842 C T CASR Silent p.F320F 0.28 TCGA-EB-A3Y6-01 3 122002676 122002676 C T CASR Silent p.F635F 0.13 TCGA-EB-A3Y6-01 3 122002902 122002902 C T CASR Missense_Mutation p.R711C 0.32 deleterious(0.04) benign(0.365) TCGA-EB-A3Y6-01 3 123051503 123051503 C A ADCY5 Nonsense_Mutation p.E476* 0.26 TCGA-EB-A3Y6-01 3 123471262 123471262 G A MYLK Missense_Mutation p.H97Y 0.36 tolerated(0.13) benign(0.14) TCGA-EB-A3Y6-01 3 124578242 124578242 G A ITGB5 Missense_Mutation p.L70F 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 3 129370639 129370639 C T TMCC1 Splice_Site p.X550_splice 0.31 TCGA-EB-A3Y6-01 3 130318625 130318625 C T COL6A6 Missense_Mutation p.P1542S 0.23 tolerated(0.22) benign(0.066) TCGA-EB-A3Y6-01 3 138426007 138426007 G A PIK3CB Silent p.F508F 0.24 TCGA-EB-A3Y6-01 3 140265424 140265424 C T CLSTN2 Silent p.R525R 0.30 TCGA-EB-A3Y6-01 3 14712409 14712409 C T CCDC174 Missense_Mutation p.S371F 0.12 tolerated(0.32) possibly_damaging(0.831) TCGA-EB-A3Y6-01 3 150398676 150398676 G A FAM194A Silent p.I308I 0.32 TCGA-EB-A3Y6-01 3 153973266 153973266 C T ARHGEF26 3'UTR 0.11 TCGA-EB-A3Y6-01 3 154145317 154145317 C T GPR149 Missense_Mutation p.D388N 0.27 deleterious(0.01) possibly_damaging(0.494) TCGA-EB-A3Y6-01 3 157920882 157920882 C T RSRC1 Silent p.L114L 0.09 TCGA-EB-A3Y6-01 3 160138668 160138668 A C SMC4 Silent p.A666A 0.44 TCGA-EB-A3Y6-01 3 164725712 164725712 T G SI Silent p.P1418P 0.31 TCGA-EB-A3Y6-01 3 184038413 184038413 C T EIF4G1 Intron 0.24 TCGA-EB-A3Y6-01 3 192516850 192516850 G A MB21D2 Silent p.V267V 0.31 TCGA-EB-A3Y6-01 3 193120391 193120391 C T ATP13A4 3'UTR 0.26 TCGA-EB-A3Y6-01 3 193175241 193175241 G T ATP13A4 Missense_Mutation p.S563Y 0.35 tolerated(0.29) benign(0.055) TCGA-EB-A3Y6-01 3 194062001 194062001 G A CPN2 Silent p.A477A 0.19 TCGA-EB-A3Y6-01 3 20153262 20153262 C T KAT2B Silent p.I342I 0.24 TCGA-EB-A3Y6-01 3 24169111 24169111 C T THRB Silent p.L341L 0.10 TCGA-EB-A3Y6-01 3 24231643 24231643 G A THRB Missense_Mutation p.H69Y 0.23 deleterious_low_confidence(0.01) benign(0.004) TCGA-EB-A3Y6-01 3 361463 361463 G A CHL1 Missense_Mutation p.E2K 0.21 tolerated_low_confidence(0.15) benign(0.007) TCGA-EB-A3Y6-01 3 38647610 38647610 C T SCN5A Missense_Mutation p.M390I 0.32 tolerated(0.05) probably_damaging(0.98) TCGA-EB-A3Y6-01 3 38651317 38651317 A G SCN5A Missense_Mutation p.V281A 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-EB-A3Y6-01 3 38755538 38755538 C T SCN10A Missense_Mutation p.E1239K 0.20 tolerated(0.06) benign(0.001) TCGA-EB-A3Y6-01 3 38812783 38812783 C T SCN10A Missense_Mutation p.V196I 0.16 tolerated(0.1) probably_damaging(0.927) TCGA-EB-A3Y6-01 3 39374683 39374683 C T CCR8 Silent p.I287I 0.16 TCGA-EB-A3Y6-01 3 44700594 44700594 G A ZNF35 Missense_Mutation p.E247K 0.26 deleterious(0.01) probably_damaging(0.948) TCGA-EB-A3Y6-01 3 46486834 46486834 C T LTF Missense_Mutation p.R484K 0.27 deleterious(0) possibly_damaging(0.811) TCGA-EB-A3Y6-01 3 46944857 46944857 C T PTH1R Missense_Mutation p.P498L 0.22 deleterious(0.02) possibly_damaging(0.603) TCGA-EB-A3Y6-01 3 48421035 48421035 G A FBXW12 Missense_Mutation p.R254H 0.08 tolerated(1) benign(0.288) TCGA-EB-A3Y6-01 3 48456735 48456735 G A PLXNB1 Silent p.V1272V 0.33 TCGA-EB-A3Y6-01 3 49059720 49059720 C T NDUFAF3 Intron 0.17 TCGA-EB-A3Y6-01 3 49692070 49692070 G A BSN Missense_Mutation p.R1694K 0.29 unknown(0) TCGA-EB-A3Y6-01 3 49701251 49701251 G A BSN Missense_Mutation p.G3847E 0.31 probably_damaging(0.994) TCGA-EB-A3Y6-01 3 49735512 49735512 C T RNF123 Missense_Mutation p.S142F 0.27 deleterious(0.04) probably_damaging(0.975) TCGA-EB-A3Y6-01 3 50224047 50224047 C T SEMA3F Silent p.A605A 0.27 TCGA-EB-A3Y6-01 3 57143616 57143616 G A IL17RD Missense_Mutation p.P167S 0.25 deleterious(0) probably_damaging(0.937) TCGA-EB-A3Y6-01 3 57310699 57310699 C T ASB14 Missense_Mutation p.R548Q 0.28 tolerated(0.31) benign(0.269) TCGA-EB-A3Y6-01 3 58084492 58084492 C T FLNB Missense_Mutation p.T401I 0.29 deleterious(0.02) benign(0.003) TCGA-EB-A3Y6-01 3 58131696 58131696 C T FLNB Missense_Mutation p.S1856F 0.34 deleterious(0) probably_damaging(0.932) TCGA-EB-A3Y6-01 3 58196588 58196588 G A DNASE1L3 Missense_Mutation p.H16Y 0.36 tolerated(0.63) benign(0.152) TCGA-EB-A3Y6-01 3 64133246 64133246 G A PRICKLE2 Missense_Mutation p.S307L 0.23 deleterious(0) probably_damaging(0.979) TCGA-EB-A3Y6-01 3 7494303 7494303 G A GRM7 Missense_Mutation p.R395K 0.35 tolerated(0.12) probably_damaging(0.991) TCGA-EB-A3Y6-01 3 7494344 7494344 C T GRM7 Nonsense_Mutation p.Q409* 0.37 TCGA-EB-A3Y6-01 3 86010709 86010709 C T CADM2 Silent p.F287F 0.16 TCGA-EB-A3Y6-01 3 86996214 86996214 A C VGLL3 Missense_Mutation p.L314R 0.09 deleterious(0.05) benign(0.003) TCGA-EB-A3Y6-01 3 9516192 9516192 G A SETD5 Missense_Mutation p.R1186Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y6-01 3 98072795 98072795 C A OR5K4 Missense_Mutation p.A33D 0.10 deleterious(0.01) benign(0.342) TCGA-EB-A3Y6-01 3 98110389 98110389 G A OR5K3 Missense_Mutation p.E294K 0.29 tolerated(0.19) benign(0.128) TCGA-EB-A3Y6-01 4 100200661 100200661 G A ADH1A Missense_Mutation p.S342L 0.13 tolerated(0.2) benign(0.039) TCGA-EB-A3Y6-01 4 104579460 104579460 G A TACR3 Missense_Mutation p.P217S 0.26 deleterious(0) possibly_damaging(0.903) TCGA-EB-A3Y6-01 4 104579461 104579461 G A TACR3 Silent p.F216F 0.27 TCGA-EB-A3Y6-01 4 104640335 104640335 G A TACR3 Silent p.I166I 0.30 TCGA-EB-A3Y6-01 4 110865019 110865019 G A EGF Silent p.E177E 0.20 TCGA-EB-A3Y6-01 4 111409736 111409736 G A ENPEP Silent p.R228R 0.23 TCGA-EB-A3Y6-01 4 115997885 115997885 C T NDST4 Missense_Mutation p.R103Q 0.33 deleterious(0.02) benign(0.002) TCGA-EB-A3Y6-01 4 115998159 115998159 G A NDST4 Nonsense_Mutation p.R12* 0.60 TCGA-EB-A3Y6-01 4 126373155 126373155 C T FAT4 Missense_Mutation p.P3662S 0.10 probably_damaging(0.998) TCGA-EB-A3Y6-01 4 13602715 13602715 T A BOD1L1 Missense_Mutation p.T1937S 0.23 benign(0.013) TCGA-EB-A3Y6-01 4 138452175 138452175 G A PCDH18 Silent p.I356I 0.31 TCGA-EB-A3Y6-01 4 146575266 146575266 C A MMAA Missense_Mutation p.R314S 0.28 deleterious(0.05) benign(0.419) TCGA-EB-A3Y6-01 4 149356521 149356521 C T NR3C2 Missense_Mutation p.D498N 0.29 tolerated(0.62) possibly_damaging(0.811) TCGA-EB-A3Y6-01 4 151023931 151023931 C T DCLK2 Silent p.V241V 0.17 TCGA-EB-A3Y6-01 4 155180844 155180844 G A DCHS2 Silent p.I1759I 0.36 TCGA-EB-A3Y6-01 4 158224719 158224719 C T GRIA2 Missense_Mutation p.S82L 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 4 158224761 158224761 C T GRIA2 Missense_Mutation p.S96F 0.37 deleterious(0) probably_damaging(0.936) TCGA-EB-A3Y6-01 4 164393182 164393182 C T TKTL2 Missense_Mutation p.E569K 0.30 deleterious(0) probably_damaging(0.966) TCGA-EB-A3Y6-01 4 166405617 166405617 C T CPE Silent p.F278F 0.22 TCGA-EB-A3Y6-01 4 166986936 166986936 C T TLL1 Silent p.S703S 0.20 TCGA-EB-A3Y6-01 4 166986937 166986937 C T TLL1 Nonsense_Mutation p.Q704* 0.20 TCGA-EB-A3Y6-01 4 169206021 169206021 G A DDX60 Missense_Mutation p.S504F 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-EB-A3Y6-01 4 170043353 170043353 G A SH3RF1 Missense_Mutation p.P415L 0.31 tolerated(0.08) benign(0.004) TCGA-EB-A3Y6-01 4 175577921 175577921 C T GLRA3 Silent p.L363L 0.12 TCGA-EB-A3Y6-01 4 175897421 175897421 G A ADAM29 Missense_Mutation p.E249K 0.27 deleterious(0) probably_damaging(0.976) TCGA-EB-A3Y6-01 4 183601455 183601455 G A TENM3 Missense_Mutation p.G531E 0.15 deleterious(0) probably_damaging(0.972) TCGA-EB-A3Y6-01 4 183664465 183664465 C T TENM3 Silent p.A1174A 0.32 TCGA-EB-A3Y6-01 4 187004063 187004063 C T TLR3 Missense_Mutation p.P408L 0.30 deleterious(0.03) possibly_damaging(0.823) TCGA-EB-A3Y6-01 4 189068588 189068588 G A TRIML1 3'UTR 0.14 TCGA-EB-A3Y6-01 4 2065774 2065774 G A NAT8L Missense_Mutation p.G277S 0.33 tolerated(0.17) probably_damaging(0.999) TCGA-EB-A3Y6-01 4 25028503 25028503 G A LGI2 Missense_Mutation p.H110Y 0.22 deleterious(0.04) possibly_damaging(0.811) TCGA-EB-A3Y6-01 4 2744117 2744117 G A TNIP2 Missense_Mutation p.P386L 0.32 tolerated(0.32) benign(0.001) TCGA-EB-A3Y6-01 4 40245390 40245390 C T RHOH Silent p.A128A 0.31 TCGA-EB-A3Y6-01 4 40440109 40440109 G T RBM47 Missense_Mutation p.Q268K 0.07 tolerated(0.23) probably_damaging(0.914) TCGA-EB-A3Y6-01 4 53369 53369 C T ZNF595 5'UTR 0.05 TCGA-EB-A3Y6-01 4 6860208 6860208 C T KIAA0232 Missense_Mutation p.P165S 0.16 tolerated_low_confidence(0.08) probably_damaging(0.957) TCGA-EB-A3Y6-01 4 69203552 69203552 G A YTHDC1 Missense_Mutation p.S66F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-EB-A3Y6-01 4 69431339 69431339 A G UGT2B17 Missense_Mutation p.V275A 0.32 deleterious(0) benign(0.256) TCGA-EB-A3Y6-01 4 71396990 71396990 G A AMTN Missense_Mutation p.E198K 0.20 tolerated(0.12) benign(0.028) TCGA-EB-A3Y6-01 4 74274469 74274469 G A ALB Silent p.E143E 0.28 TCGA-EB-A3Y6-01 4 79461835 79461835 G A FRAS1 Missense_Mutation p.D3866N 0.35 benign(0.244) TCGA-EB-A3Y6-01 4 80327860 80327860 G A GK2 Missense_Mutation p.R499C 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-EB-A3Y6-01 4 80328097 80328097 G A GK2 Missense_Mutation p.R420C 0.33 deleterious(0.01) possibly_damaging(0.631) TCGA-EB-A3Y6-01 4 88226317 88226317 C T HSD17B13 3'UTR 0.23 TCGA-EB-A3Y6-01 4 90647621 90647621 G A SNCA 3'UTR 0.29 TCGA-EB-A3Y6-01 4 96036835 96036835 G A BMPR1B Splice_Site p.X113_splice 0.31 TCGA-EB-A3Y6-01 5 113699689 113699689 G A KCNN2 Silent p.R191R 0.10 TCGA-EB-A3Y6-01 5 115319105 115319105 C T AQPEP Missense_Mutation p.L273F 0.44 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y6-01 5 121759222 121759222 A G SNCAIP Missense_Mutation p.S264G 0.07 tolerated(0.28) benign(0.003) TCGA-EB-A3Y6-01 5 135207534 135207534 C T SLC25A48 Intron 0.54 TCGA-EB-A3Y6-01 5 135601921 135601921 C T TRPC7 Missense_Mutation p.M444I 0.08 tolerated(0.82) benign(0.009) TCGA-EB-A3Y6-01 5 135692398 135692398 C T TRPC7 Silent p.A226A 0.37 TCGA-EB-A3Y6-01 5 137878492 137878492 G A ETF1 Intron 0.14 TCGA-EB-A3Y6-01 5 137878493 137878493 G A ETF1 Intron 0.15 TCGA-EB-A3Y6-01 5 13811819 13811819 C T DNAH5 Silent p.E2448E 0.31 TCGA-EB-A3Y6-01 5 139876829 139876829 G A ANKHD1 Silent p.Q990Q 0.14 TCGA-EB-A3Y6-01 5 139918661 139918661 C T ANKHD1 Missense_Mutation p.A2521V 0.14 possibly_damaging(0.788) TCGA-EB-A3Y6-01 5 140215240 140215240 G A PCDHA7 Silent p.V424V 0.41 TCGA-EB-A3Y6-01 5 140307480 140307480 G A PCDHAC1 Missense_Mutation p.D335N 0.49 tolerated(0.17) possibly_damaging(0.706) TCGA-EB-A3Y6-01 5 140559510 140559510 G A PCDHB8 Missense_Mutation p.S632N 0.09 deleterious_low_confidence(0.02) benign(0.344) TCGA-EB-A3Y6-01 5 140580499 140580499 C A PCDHB11 Silent p.S384S 0.26 TCGA-EB-A3Y6-01 5 140589591 140589591 G A PCDHB12 Missense_Mutation p.R371Q 0.18 tolerated_low_confidence(0.17) benign(0.037) TCGA-EB-A3Y6-01 5 140720260 140720260 C T PCDHGA2 Silent p.G574G 0.13 TCGA-EB-A3Y6-01 5 149245817 149245817 C T PDE6A Splice_Site p.X759_splice 0.07 TCGA-EB-A3Y6-01 5 150922683 150922683 G A FAT2 Missense_Mutation p.P2669S 0.07 probably_damaging(1) TCGA-EB-A3Y6-01 5 167882494 167882494 C T WWC1 Missense_Mutation p.S931F 0.14 deleterious(0) probably_damaging(0.909) TCGA-EB-A3Y6-01 5 172571559 172571559 C T BNIP1 Missense_Mutation p.P4L 0.36 tolerated(0.14) benign(0.005) TCGA-EB-A3Y6-01 5 174869868 174869868 G A DRD1 Missense_Mutation p.P79S 0.25 tolerated(0.05) probably_damaging(1) TCGA-EB-A3Y6-01 5 175716691 175716691 G A SIMC1 Intron 0.19 TCGA-EB-A3Y6-01 5 178139311 178139311 C T ZNF354A Missense_Mutation p.R523Q 0.20 tolerated(0.5) benign(0.015) TCGA-EB-A3Y6-01 5 178585775 178585775 C T ADAMTS2 Missense_Mutation p.D361N 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 5 179044567 179044567 G A HNRNPH1 Silent p.F335F 0.44 TCGA-EB-A3Y6-01 5 180432752 180432752 C T BTNL3 Silent p.S427S 0.14 TCGA-EB-A3Y6-01 5 2749165 2749165 C T IRX2 Silent p.G219G 0.18 TCGA-EB-A3Y6-01 5 32074319 32074319 G A PDZD2 Missense_Mutation p.G1036D 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 5 40937767 40937767 G A C7 Missense_Mutation p.G181E 0.18 tolerated(1) benign(0.006) TCGA-EB-A3Y6-01 5 40976884 40976884 C T C7 Nonsense_Mutation p.Q703* 0.48 TCGA-EB-A3Y6-01 5 41058176 41058176 G A MROH2B Missense_Mutation p.H249Y 0.15 tolerated(0.55) benign(0.002) TCGA-EB-A3Y6-01 5 41155163 41155163 G A C6 Missense_Mutation p.S671L 0.18 tolerated(0.63) benign(0.006) TCGA-EB-A3Y6-01 5 43280578 43280578 A T NIM1K Missense_Mutation p.E353V 0.15 deleterious(0.02) benign(0.04) TCGA-EB-A3Y6-01 5 50125781 50125781 C T PARP8 Missense_Mutation p.S740L 0.17 deleterious(0.02) benign(0.232) TCGA-EB-A3Y6-01 5 5461236 5461236 G A KIAA0947 Missense_Mutation p.E597K 0.34 tolerated(0.3) benign(0.044) TCGA-EB-A3Y6-01 5 59934624 59934624 T G DEPDC1B Missense_Mutation p.E284A 0.14 deleterious(0.04) possibly_damaging(0.739) TCGA-EB-A3Y6-01 5 60189014 60189014 A T ERCC8 Intron 0.36 TCGA-EB-A3Y6-01 5 67591097 67591097 A G PIK3R1 Missense_Mutation p.N564D 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-EB-A3Y6-01 5 90103462 90103462 C T GPR98 Silent p.F4960F 0.29 TCGA-EB-A3Y6-01 5 90106484 90106484 C T GPR98 Missense_Mutation p.S5136F 0.09 possibly_damaging(0.831) TCGA-EB-A3Y6-01 6 116264184 116264184 A C FRK Missense_Mutation p.S435R 0.41 deleterious(0) possibly_damaging(0.493) TCGA-EB-A3Y6-01 6 130476083 130476083 C T SAMD3 Missense_Mutation p.E304K 0.40 tolerated(0.29) possibly_damaging(0.664) TCGA-EB-A3Y6-01 6 131206240 131206240 C T EPB41L2 Missense_Mutation p.G610E 0.57 tolerated(0.08) probably_damaging(0.999) TCGA-EB-A3Y6-01 6 158549154 158549154 G A SERAC1 Missense_Mutation p.S334F 0.20 deleterious(0.03) benign(0.037) TCGA-EB-A3Y6-01 6 169648776 169648776 G A THBS2 Silent p.I115I 0.43 TCGA-EB-A3Y6-01 6 20109840 20109840 G A MBOAT1 Silent p.I450I 0.07 TCGA-EB-A3Y6-01 6 24466921 24466921 C T GPLD1 Missense_Mutation p.E270K 0.35 deleterious(0.05) benign(0.006) TCGA-EB-A3Y6-01 6 26405846 26405846 C T BTN3A1 Missense_Mutation p.L19F 0.19 tolerated(0.5) benign(0.014) TCGA-EB-A3Y6-01 6 28540752 28540752 C A SCAND3 Missense_Mutation p.G972C 0.07 deleterious(0) probably_damaging(0.917) TCGA-EB-A3Y6-01 6 28542443 28542443 G A SCAND3 Missense_Mutation p.S680L 0.31 tolerated_low_confidence(0.11) benign(0.06) TCGA-EB-A3Y6-01 6 29394623 29394623 C A OR11A1 Missense_Mutation p.V266F 0.15 deleterious(0.03) benign(0.063) TCGA-EB-A3Y6-01 6 29523699 29523699 C T UBD Silent p.K152K 0.25 TCGA-EB-A3Y6-01 6 32011786 32011786 C T TNXB Missense_Mutation p.G224E 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 6 37139091 37139091 C G PIM1 Missense_Mutation p.A144G 0.34 deleterious(0.03) probably_damaging(0.975) TCGA-EB-A3Y6-01 6 37139092 37139092 C T PIM1 Silent p.A144A 0.34 TCGA-EB-A3Y6-01 6 37605941 37605941 C T MDGA1 Intron 0.45 TCGA-EB-A3Y6-01 6 39880099 39880099 A C MOCS1 Missense_Mutation p.F297C 0.32 deleterious(0) probably_damaging(0.94) TCGA-EB-A3Y6-01 6 42712698 42712698 T A TBCC 3'UTR 0.50 TCGA-EB-A3Y6-01 6 49986688 49986688 C T DEFB110 3'UTR 0.26 TCGA-EB-A3Y6-01 6 6266848 6266848 G A F13A1 Nonsense_Mutation p.R172* 0.36 TCGA-EB-A3Y6-01 6 7584309 7584309 C T DSP Missense_Mutation p.L2272F 0.35 probably_damaging(0.999) TCGA-EB-A3Y6-01 6 76717201 76717201 C T IMPG1 Missense_Mutation p.D295N 0.48 tolerated(0.06) possibly_damaging(0.585) TCGA-EB-A3Y6-01 7 100244235 100244235 T C ACTL6B Missense_Mutation p.N351S 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-EB-A3Y6-01 7 100244640 100244640 T C ACTL6B Missense_Mutation p.E297G 0.17 deleterious(0) probably_damaging(0.991) TCGA-EB-A3Y6-01 7 100839262 100839262 C T MOGAT3 Missense_Mutation p.G331R 0.25 deleterious(0) probably_damaging(0.982) TCGA-EB-A3Y6-01 7 101200654 101200654 C T COL26A1 Missense_Mutation p.P390L 0.31 deleterious(0.01) possibly_damaging(0.704) TCGA-EB-A3Y6-01 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.15 TCGA-EB-A3Y6-01 7 113558462 113558462 G A PPP1R3A Missense_Mutation p.P197L 0.18 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y6-01 7 117250629 117250629 C T CFTR Silent p.I1015I 0.35 TCGA-EB-A3Y6-01 7 117874828 117874828 T C ANKRD7 Missense_Mutation p.I123T 0.19 tolerated(0.41) benign(0.014) TCGA-EB-A3Y6-01 7 120911478 120911478 C T CPED1 Silent p.F954F 0.07 TCGA-EB-A3Y6-01 7 12692567 12692567 A C SCIN 3'UTR 0.38 TCGA-EB-A3Y6-01 7 136588004 136588004 C T CHRM2 Intron 0.42 TCGA-EB-A3Y6-01 7 140045754 140045754 G A SLC37A3 Silent p.G347G 0.18 TCGA-EB-A3Y6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EB-A3Y6-01 7 141408896 141408896 C T WEE2 Missense_Mutation p.P113L 0.21 deleterious(0) possibly_damaging(0.858) TCGA-EB-A3Y6-01 7 142494258 142494258 C T TRBJ2-2 Silent p.L6L 0.14 TCGA-EB-A3Y6-01 7 142637533 142637533 G A C7orf34 Silent p.Q101Q 0.23 TCGA-EB-A3Y6-01 7 143098546 143098546 G A EPHA1 Silent p.F101F 0.30 TCGA-EB-A3Y6-01 7 143807096 143807096 A T OR2A2 Missense_Mutation p.T141S 0.26 tolerated(0.13) benign(0.073) TCGA-EB-A3Y6-01 7 150033881 150033881 C T LRRC61 5'UTR 0.15 TCGA-EB-A3Y6-01 7 150747973 150747973 G A ASIC3 Silent p.G314G 0.33 TCGA-EB-A3Y6-01 7 155598993 155598993 C T SHH Missense_Mutation p.A187T 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-EB-A3Y6-01 7 31144519 31144519 G A ADCYAP1R1 Missense_Mutation p.G433D 0.33 deleterious(0) possibly_damaging(0.791) TCGA-EB-A3Y6-01 7 35013211 35013211 G A DPY19L1 Missense_Mutation p.R204C 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 7 35707199 35707199 C T HERPUD2 Splice_Site p.X114_splice 0.07 TCGA-EB-A3Y6-01 7 37298927 37298927 C T ELMO1 Missense_Mutation p.R91Q 0.37 tolerated(0.53) possibly_damaging(0.573) TCGA-EB-A3Y6-01 7 39611933 39611933 A T YAE1D1 Silent p.I103I 0.15 TCGA-EB-A3Y6-01 7 41729807 41729807 C G INHBA Missense_Mutation p.R241P 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-EB-A3Y6-01 7 44524593 44524593 G A NUDCD3 Silent p.V161V 0.20 TCGA-EB-A3Y6-01 7 44575925 44575925 G A NPC1L1 Missense_Mutation p.A595V 0.17 tolerated(0.2) benign(0.103) TCGA-EB-A3Y6-01 7 48318349 48318349 G A ABCA13 Missense_Mutation p.D2520N 0.33 benign(0.037) TCGA-EB-A3Y6-01 7 48375094 48375094 C T ABCA13 Nonsense_Mutation p.Q3359* 0.34 TCGA-EB-A3Y6-01 7 5567346 5567346 G A ACTB 3'UTR 0.18 TCGA-EB-A3Y6-01 7 66460441 66460441 G A SBDS 5'UTR 0.19 TCGA-EB-A3Y6-01 7 73474245 73474245 G A ELN Missense_Mutation p.G482R 0.26 unknown(0) TCGA-EB-A3Y6-01 7 78130913 78130913 C T MAGI2 Missense_Mutation p.G316S 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 7 81598265 81598265 G A CACNA2D1 Missense_Mutation p.S778L 0.13 tolerated(0.17) benign(0.245) TCGA-EB-A3Y6-01 7 82508686 82508686 C T PCLO Missense_Mutation p.G4541R 0.23 unknown(0) TCGA-EB-A3Y6-01 7 86479772 86479772 C T GRM3 Silent p.I826I 0.17 TCGA-EB-A3Y6-01 7 91709152 91709152 A G AKAP9 Missense_Mutation p.K2569E 0.34 benign(0.023) TCGA-EB-A3Y6-01 7 92861654 92861654 G A CCDC132 5'UTR 0.19 TCGA-EB-A3Y6-01 7 99367406 99367406 G A CYP3A4 Missense_Mutation p.P169L 0.09 tolerated(0.09) benign(0.07) TCGA-EB-A3Y6-01 8 10467416 10467416 C T RP1L1 Missense_Mutation p.G1398R 0.27 unknown(0) TCGA-EB-A3Y6-01 8 105264165 105264165 C T RIMS2 3'Flank 0.64 TCGA-EB-A3Y6-01 8 106814775 106814775 C T ZFPM2 Missense_Mutation p.S822F 0.50 deleterious(0) benign(0.309) TCGA-EB-A3Y6-01 8 118159392 118159392 G A SLC30A8 Missense_Mutation p.G91S 0.53 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A3Y6-01 8 121209082 121209082 C T COL14A1 Silent p.V163V 0.50 TCGA-EB-A3Y6-01 8 121528218 121528218 T A MTBP Missense_Mutation p.L678H 0.50 deleterious(0) probably_damaging(0.984) TCGA-EB-A3Y6-01 8 12879044 12879044 C T KIAA1456 Missense_Mutation p.P286S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y6-01 8 142161840 142161840 C T DENND3 Silent p.F246F 0.23 TCGA-EB-A3Y6-01 8 142221765 142221765 G A SLC45A4 Missense_Mutation p.R725C 0.12 deleterious_low_confidence(0) benign(0.075) TCGA-EB-A3Y6-01 8 144772269 144772269 C T ZNF707 5'UTR 0.21 TCGA-EB-A3Y6-01 8 145773732 145773732 G A ARHGAP39 Silent p.S246S 0.62 TCGA-EB-A3Y6-01 8 17611986 17611986 G A MTUS1 Missense_Mutation p.P444L 0.24 deleterious(0) possibly_damaging(0.842) TCGA-EB-A3Y6-01 8 18541562 18541562 G A PSD3 Intron 0.28 TCGA-EB-A3Y6-01 8 23002101 23002101 C T TNFRSF10D Silent p.E272E 0.36 TCGA-EB-A3Y6-01 8 24259437 24259437 C T ADAMDEC1 Silent p.F384F 0.09 TCGA-EB-A3Y6-01 8 25702071 25702071 C T EBF2 3'UTR 0.25 TCGA-EB-A3Y6-01 8 2806857 2806857 C A CSMD1 Nonsense_Mutation p.G3456* 0.10 TCGA-EB-A3Y6-01 8 28574334 28574334 C T EXTL3 Missense_Mutation p.P253L 0.21 deleterious(0.05) benign(0.002) TCGA-EB-A3Y6-01 8 30210057 30210057 C T TUBBP1 RNA 0.46 TCGA-EB-A3Y6-01 8 37730676 37730676 C T RAB11FIP1 Silent p.A548A 0.15 TCGA-EB-A3Y6-01 8 39780994 39780994 C T IDO1 Missense_Mutation p.P182S 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-EB-A3Y6-01 8 55537550 55537550 C T RP1 Missense_Mutation p.P370S 0.32 tolerated(0.25) benign(0.025) TCGA-EB-A3Y6-01 8 55537824 55537824 A T RP1 Missense_Mutation p.K461I 0.46 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y6-01 8 6794410 6794410 G A DEFA4 Silent p.I4I 0.14 TCGA-EB-A3Y6-01 8 68942864 68942864 G A PREX2 Missense_Mutation p.E226K 0.10 deleterious(0.03) probably_damaging(0.98) TCGA-EB-A3Y6-01 8 69633608 69633608 G A C8orf34 Missense_Mutation p.G447E 0.11 deleterious(0.04) benign(0.048) TCGA-EB-A3Y6-01 8 71646267 71646267 A T XKR9 Missense_Mutation p.I244L 0.19 tolerated(0.79) benign(0.003) TCGA-EB-A3Y6-01 8 72127898 72127898 C T EYA1 Missense_Mutation p.D476N 0.50 deleterious(0) benign(0.206) TCGA-EB-A3Y6-01 8 73848650 73848650 T A KCNB2 Missense_Mutation p.F354I 0.11 deleterious(0) probably_damaging(0.977) TCGA-EB-A3Y6-01 8 76476207 76476207 C T HNF4G Intron 0.09 TCGA-EB-A3Y6-01 8 8176651 8176651 G A SGK223 Silent p.P1078P 0.37 TCGA-EB-A3Y6-01 8 8749494 8749494 C T MFHAS1 Missense_Mutation p.D359N 0.26 tolerated(0.17) possibly_damaging(0.856) TCGA-EB-A3Y6-01 8 87587952 87587952 C T CNGB3 3'UTR 0.16 TCGA-EB-A3Y6-01 8 88885163 88885163 C T DCAF4L2 Missense_Mutation p.G346D 0.54 deleterious(0) possibly_damaging(0.71) TCGA-EB-A3Y6-01 8 98703285 98703285 C T MTDH Missense_Mutation p.S306F 0.16 deleterious(0) possibly_damaging(0.704) TCGA-EB-A3Y6-01 9 100000893 100000893 C T CCDC180 Intron 0.25 TCGA-EB-A3Y6-01 9 100116928 100116928 G A CCDC180 Missense_Mutation p.R1071Q 0.31 deleterious(0.05) benign(0.417) TCGA-EB-A3Y6-01 9 107367371 107367371 C T OR13C2 Missense_Mutation p.E180K 0.15 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y6-01 9 115932877 115932877 G A FKBP15 Silent p.S897S 0.24 TCGA-EB-A3Y6-01 9 120476556 120476556 C T TLR4 Missense_Mutation p.A717V 0.36 deleterious(0.02) probably_damaging(1) TCGA-EB-A3Y6-01 9 123907182 123907182 G A CNTRL Missense_Mutation p.R1038Q 0.22 benign(0.195) TCGA-EB-A3Y6-01 9 125437956 125437956 C T OR1L3 Missense_Mutation p.P183L 0.08 deleterious(0.03) probably_damaging(0.969) TCGA-EB-A3Y6-01 9 125681359 125681359 C T ZBTB26 Silent p.L285L 0.24 TCGA-EB-A3Y6-01 9 13121775 13121775 G A MPDZ Missense_Mutation p.P1732S 0.43 tolerated(0.07) probably_damaging(0.979) TCGA-EB-A3Y6-01 9 131857859 131857859 G A CRAT Silent p.F566F 0.42 TCGA-EB-A3Y6-01 9 135447804 135447804 G A C9orf171 Silent p.T290T 0.13 TCGA-EB-A3Y6-01 9 136401925 136401925 G A ADAMTSL2 Splice_Site p.X30_splice 0.28 TCGA-EB-A3Y6-01 9 136597576 136597576 T C SARDH Missense_Mutation p.Q160R 0.09 deleterious(0.04) possibly_damaging(0.881) TCGA-EB-A3Y6-01 9 21141572 21141572 G A IFNW1 5'UTR 0.50 TCGA-EB-A3Y6-01 9 21166559 21166559 G A IFNA21 Missense_Mutation p.S18F 0.16 deleterious(0.03) possibly_damaging(0.563) TCGA-EB-A3Y6-01 9 27950360 27950360 G A LINGO2 Missense_Mutation p.L104F 0.49 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A3Y6-01 9 32632525 32632525 G A TAF1L Missense_Mutation p.S1018F 0.45 deleterious(0) probably_damaging(0.979) TCGA-EB-A3Y6-01 9 32635183 32635183 G A TAF1L Missense_Mutation p.P132L 0.54 deleterious_low_confidence(0.02) benign(0.007) TCGA-EB-A3Y6-01 9 34610776 34610776 G A RPP25L 3'UTR 0.38 TCGA-EB-A3Y6-01 9 34610777 34610777 G A RPP25L 3'UTR 0.39 TCGA-EB-A3Y6-01 9 35546439 35546439 C T RUSC2 5'UTR 0.61 TCGA-EB-A3Y6-01 9 74324368 74324368 C T TMEM2 Missense_Mutation p.G931E 0.41 deleterious(0) probably_damaging(0.98) TCGA-EB-A3Y6-01 9 84249096 84249096 G A TLE1 Missense_Mutation p.L165F 0.36 deleterious(0.03) benign(0.009) TCGA-EB-A3Y6-01 9 84532834 84532834 C T SPATA31D5P RNA 0.17 TCGA-EB-A3Y6-01 9 90343253 90343253 A C CTSL Missense_Mutation p.E113A 0.33 tolerated(0.22) benign(0.062) TCGA-EB-A3Y6-01 9 95219762 95219762 G A ASPN Silent p.I317I 0.14 TCGA-EB-A3Y6-01 9 99157136 99157136 G A ZNF367 Silent p.T220T 0.24 TCGA-EB-A3Y6-01 9 99157137 99157137 G A ZNF367 Missense_Mutation p.T220I 0.27 deleterious(0.03) probably_damaging(0.958) TCGA-EB-A3Y6-01 9 99581330 99581330 G A ZNF782 Silent p.L325L 0.30 TCGA-EB-A3Y6-01 9 99691319 99691319 G A NUTM2G Missense_Mutation p.G5R 0.13 tolerated(0.22) benign(0.251) TCGA-EB-A3Y6-01 X 102193023 102193023 C T RAB40AL Silent p.I259I 0.27 TCGA-EB-A3Y6-01 X 106070472 106070472 C T TBC1D8B Missense_Mutation p.R370C 0.20 tolerated(0.07) probably_damaging(0.943) TCGA-EB-A3Y6-01 X 109695261 109695261 T G RGAG1 Silent p.T472T 0.18 TCGA-EB-A3Y6-01 X 114141636 114141636 C T HTR2C Silent p.L345L 0.38 TCGA-EB-A3Y6-01 X 115594041 115594041 C A CT83 5'UTR 0.10 TCGA-EB-A3Y6-01 X 118220586 118220586 G A KIAA1210 Missense_Mutation p.S1536F 0.42 tolerated(0.35) benign(0.235) TCGA-EB-A3Y6-01 X 118222028 118222028 G A KIAA1210 Silent p.S1055S 0.16 TCGA-EB-A3Y6-01 X 118223062 118223062 C T KIAA1210 Missense_Mutation p.D711N 0.19 deleterious(0.02) benign(0.167) TCGA-EB-A3Y6-01 X 119054534 119054534 C T AKAP14 Silent p.F186F 0.27 TCGA-EB-A3Y6-01 X 119249517 119249517 C T RHOXF1 Missense_Mutation p.E86K 0.39 tolerated(0.07) possibly_damaging(0.636) TCGA-EB-A3Y6-01 X 12937851 12937851 A G TLR8 Missense_Mutation p.N231S 0.05 tolerated(0.12) benign(0.088) TCGA-EB-A3Y6-01 X 130222791 130222791 G A ARHGAP36 3'UTR 0.28 TCGA-EB-A3Y6-01 X 13061230 13061253 GGACTTAAACACTTTACCCCGTGT - FAM9C Splice_Site p.X59_splice 0.24 TCGA-EB-A3Y6-01 X 132091215 132091215 C T HS6ST2 Missense_Mutation p.V190M 0.32 tolerated_low_confidence(0.33) benign(0.002) TCGA-EB-A3Y6-01 X 132161123 132161123 G A USP26 Missense_Mutation p.H376Y 0.12 deleterious(0) benign(0.016) TCGA-EB-A3Y6-01 X 133379570 133379570 A G CCDC160 Missense_Mutation p.K247R 0.25 deleterious(0.04) benign(0) TCGA-EB-A3Y6-01 X 135427903 135427903 G A GPR112 Missense_Mutation p.E680K 0.15 tolerated(0.18) benign(0.056) TCGA-EB-A3Y6-01 X 135469928 135469928 G A GPR112 Silent p.G2602G 0.37 TCGA-EB-A3Y6-01 X 140995342 140995342 G A MAGEC1 Missense_Mutation p.E718K 0.18 tolerated_low_confidence(0.05) benign(0.292) TCGA-EB-A3Y6-01 X 140995620 140995620 C T MAGEC1 Silent p.L810L 0.27 TCGA-EB-A3Y6-01 X 141291004 141291004 C T MAGEC2 Missense_Mutation p.G257E 0.16 deleterious(0.02) possibly_damaging(0.487) TCGA-EB-A3Y6-01 X 14862651 14862651 G A FANCB Silent p.F713F 0.31 TCGA-EB-A3Y6-01 X 150155604 150155604 T C HMGB3 Silent p.S98S 0.13 TCGA-EB-A3Y6-01 X 151304266 151304266 C T MAGEA10 5'UTR 0.29 TCGA-EB-A3Y6-01 X 153036794 153036794 C T PLXNB3 Silent p.L784L 0.26 TCGA-EB-A3Y6-01 X 153038448 153038448 C T PLXNB3 Silent p.F984F 0.28 TCGA-EB-A3Y6-01 X 153996881 153996881 G A DKC1 Intron 0.34 TCGA-EB-A3Y6-01 X 154003486 154003486 G A DKC1 Missense_Mutation p.E426K 0.37 tolerated(0.37) benign(0) TCGA-EB-A3Y6-01 X 17744754 17744754 G A NHS Missense_Mutation p.R822K 0.13 tolerated(0.83) benign(0.012) TCGA-EB-A3Y6-01 X 21675792 21675792 C T KLHL34 Missense_Mutation p.E39K 0.37 deleterious(0.01) possibly_damaging(0.698) TCGA-EB-A3Y6-01 X 22231020 22231020 G A PHEX Splice_Site p.X549_splice 0.16 TCGA-EB-A3Y6-01 X 23019901 23019901 C T DDX53 Missense_Mutation p.S576L 0.20 tolerated(0.05) benign(0.002) TCGA-EB-A3Y6-01 X 3235414 3235414 G A MXRA5 Missense_Mutation p.P2103L 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A3Y6-01 X 35820439 35820439 C T MAGEB16 Silent p.S42S 0.47 TCGA-EB-A3Y6-01 X 35820627 35820627 C T MAGEB16 Missense_Mutation p.P105L 0.10 tolerated(0.12) benign(0.423) TCGA-EB-A3Y6-01 X 35994009 35994009 T A CXorf22 Missense_Mutation p.F898I 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y6-01 X 37026933 37026933 G A FAM47C Silent p.L150L 0.25 TCGA-EB-A3Y6-01 X 43515648 43515648 G A MAOA Missense_Mutation p.G20E 0.23 deleterious(0) probably_damaging(0.986) TCGA-EB-A3Y6-01 X 46466593 46466593 C T SLC9A7 Missense_Mutation p.E658K 0.27 deleterious(0.02) benign(0.075) TCGA-EB-A3Y6-01 X 47065744 47065744 C T UBA1 Silent p.F613F 0.33 TCGA-EB-A3Y6-01 X 49104003 49104003 C T CCDC22 Missense_Mutation p.S319F 0.20 deleterious(0.04) possibly_damaging(0.629) TCGA-EB-A3Y6-01 X 52825289 52825289 G A SPANXN5 3'UTR 0.28 TCGA-EB-A3Y6-01 X 53576039 53576040 - ACGC HUWE1 Frame_Shift_Ins p.S3306Afs*6 0.27 TCGA-EB-A3Y6-01 X 54496497 54496497 C T FGD1 Silent p.K351K 0.55 TCGA-EB-A3Y6-01 X 57936125 57936125 C T ZXDA Missense_Mutation p.E244K 0.25 tolerated(0.29) benign(0.006) TCGA-EB-A3Y6-01 X 5821284 5821284 C T NLGN4X Missense_Mutation p.E479K 0.18 tolerated(0.28) benign(0.08) TCGA-EB-A3Y6-01 X 69489535 69489535 A T ARR3 Missense_Mutation p.N11I 0.25 deleterious(0) possibly_damaging(0.706) TCGA-EB-A3Y6-01 X 69673525 69673525 G A DLG3 Missense_Mutation p.G395D 0.30 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y6-01 X 71417227 71417227 G T PIN4 Missense_Mutation p.G108C 0.19 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y6-01 X 73749091 73749091 C T SLC16A2 Missense_Mutation p.P405L 0.10 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y6-01 X 78216833 78216833 C A P2RY10 Silent p.T272T 0.15 TCGA-EB-A3Y6-01 X 83128247 83128247 C T CYLC1 Silent p.S177S 0.17 TCGA-EB-A3Y6-01 X 84537124 84537124 T A POF1B Intron 0.57 TCGA-EB-A3Y6-01 X 99848959 99848959 C T TNMD Missense_Mutation p.P83L 0.11 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y7-01 10 101656153 101656153 G A DNMBP Silent p.V974V 0.22 TCGA-EB-A3Y7-01 10 102247350 102247350 C T SEC31B 3'UTR 0.25 TCGA-EB-A3Y7-01 10 1041878 1041878 C T GTPBP4 Missense_Mutation p.P77S 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 10 104569810 104569810 C T WBP1L Silent p.F118F 0.31 TCGA-EB-A3Y7-01 10 105048181 105048181 C T INA Missense_Mutation p.P419S 0.26 tolerated(0.06) benign(0.026) TCGA-EB-A3Y7-01 10 105762804 105762804 G C SLK Missense_Mutation p.S623T 0.26 tolerated(0.27) benign(0.002) TCGA-EB-A3Y7-01 10 106074934 106074934 G A ITPRIP Silent p.S292S 0.26 TCGA-EB-A3Y7-01 10 111642204 111642204 C G XPNPEP1 Missense_Mutation p.E343Q 0.34 tolerated(0.5) benign(0.002) TCGA-EB-A3Y7-01 10 114181785 114181785 G A ACSL5 Missense_Mutation p.E546K 0.24 tolerated(0.27) probably_damaging(0.994) TCGA-EB-A3Y7-01 10 116055804 116055804 A G AFAP1L2 Silent p.S818S 0.25 TCGA-EB-A3Y7-01 10 116417721 116417721 G A ABLIM1 Missense_Mutation p.P80L 0.27 deleterious(0.02) benign(0.001) TCGA-EB-A3Y7-01 10 118386498 118386498 C G PNLIPRP2 Missense_Mutation p.Q152E 0.15 tolerated(0.42) benign(0.004) TCGA-EB-A3Y7-01 10 118434800 118434800 G A HSPA12A Missense_Mutation p.P507L 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 10 12198955 12198955 C T SEC61A2 Silent p.T222T 0.30 TCGA-EB-A3Y7-01 10 123970406 123970406 G A TACC2 Missense_Mutation p.E2156K 0.24 benign(0.38) TCGA-EB-A3Y7-01 10 124402698 124402698 C T DMBT1 Silent p.F2342F 0.36 TCGA-EB-A3Y7-01 10 124402699 124402699 C T DMBT1 Missense_Mutation p.R2343W 0.36 deleterious(0) probably_damaging(0.958) TCGA-EB-A3Y7-01 10 124591852 124591852 A C CUZD1 Missense_Mutation p.V589G 0.29 deleterious(0) benign(0.157) TCGA-EB-A3Y7-01 10 125769585 125769585 C T CHST15 3'UTR 0.22 TCGA-EB-A3Y7-01 10 12867754 12867754 G A CAMK1D Intron 0.25 TCGA-EB-A3Y7-01 10 129160347 129160347 C T DOCK1 Silent p.F1080F 0.27 TCGA-EB-A3Y7-01 10 14939292 14939292 C T SUV39H2 Missense_Mutation p.L209F 0.34 tolerated(0.16) benign(0.001) TCGA-EB-A3Y7-01 10 15254982 15254982 C T FAM171A1 Missense_Mutation p.G869R 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A3Y7-01 10 20335933 20335933 C T PLXDC2 Missense_Mutation p.R154W 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 10 20507995 20507995 G A PLXDC2 Missense_Mutation p.D426N 0.41 deleterious(0) probably_damaging(0.962) TCGA-EB-A3Y7-01 10 22690200 22690200 C T SPAG6 Silent p.F436F 0.26 TCGA-EB-A3Y7-01 10 24762474 24762474 A G KIAA1217 Silent p.R388R 0.22 TCGA-EB-A3Y7-01 10 26414392 26414392 A C MYO3A Missense_Mutation p.T657P 0.27 deleterious(0) possibly_damaging(0.882) TCGA-EB-A3Y7-01 10 26414414 26414414 G A MYO3A Missense_Mutation p.R664Q 0.29 deleterious(0.04) benign(0.248) TCGA-EB-A3Y7-01 10 26822407 26822407 G A APBB1IP Missense_Mutation p.E285K 0.19 deleterious(0.05) benign(0.013) TCGA-EB-A3Y7-01 10 26851265 26851265 A G APBB1IP Silent p.T460T 0.30 TCGA-EB-A3Y7-01 10 28260213 28260213 C T ARMC4 Silent p.K322K 0.27 TCGA-EB-A3Y7-01 10 28270401 28270401 A G ARMC4 Silent p.S310S 0.22 TCGA-EB-A3Y7-01 10 29839791 29839791 G A SVIL Missense_Mutation p.H188Y 0.21 tolerated(0.09) benign(0.001) TCGA-EB-A3Y7-01 10 30656697 30656697 C T AL161651.1 5'Flank 0.33 TCGA-EB-A3Y7-01 10 372983 372983 G A DIP2C Missense_Mutation p.S1296L 0.19 deleterious(0) benign(0.408) TCGA-EB-A3Y7-01 10 37430903 37430903 G A ANKRD30A Missense_Mutation p.E304K 0.25 tolerated(1) possibly_damaging(0.636) TCGA-EB-A3Y7-01 10 37438589 37438589 G A ANKRD30A Silent p.K462K 0.12 TCGA-EB-A3Y7-01 10 48389465 48389465 C T RBP3 Silent p.T471T 0.20 TCGA-EB-A3Y7-01 10 4877907 4877907 C T AKR1E2 Missense_Mutation p.S122F 0.27 tolerated(0.16) benign(0.001) TCGA-EB-A3Y7-01 10 48949747 48949747 A T BMS1P5 RNA 0.18 TCGA-EB-A3Y7-01 10 50594893 50594893 C T DRGX Silent p.Q87Q 0.26 TCGA-EB-A3Y7-01 10 50944566 50944566 C T OGDHL Missense_Mutation p.G864E 0.28 tolerated(0.17) benign(0.213) TCGA-EB-A3Y7-01 10 50953885 50953885 C T OGDHL Missense_Mutation p.E479K 0.23 deleterious(0.05) possibly_damaging(0.775) TCGA-EB-A3Y7-01 10 52390795 52390795 C T RP11-50E11.3 RNA 0.14 TCGA-EB-A3Y7-01 10 52566384 52566384 G A A1CF 3'UTR 0.40 TCGA-EB-A3Y7-01 10 55582527 55582527 C T PCDH15 Silent p.L1655L 0.24 TCGA-EB-A3Y7-01 10 55582664 55582664 C T PCDH15 Missense_Mutation p.E1610K 0.32 tolerated_low_confidence(0.17) benign(0.003) TCGA-EB-A3Y7-01 10 55587279 55587279 C T PCDH15 Missense_Mutation p.R1414Q 0.33 deleterious(0.03) benign(0.298) TCGA-EB-A3Y7-01 10 61028352 61028352 C T FAM13C Silent p.R301R 0.18 TCGA-EB-A3Y7-01 10 61833636 61833636 C T ANK3 Missense_Mutation p.E2335K 0.29 probably_damaging(0.959) TCGA-EB-A3Y7-01 10 62029927 62029927 G A ANK3 Missense_Mutation p.L159F 0.24 possibly_damaging(0.79) TCGA-EB-A3Y7-01 10 62645933 62645933 G A RHOBTB1 Silent p.I504I 0.26 TCGA-EB-A3Y7-01 10 63850793 63850793 C T ARID5B Missense_Mutation p.S524F 0.26 deleterious(0.02) benign(0.084) TCGA-EB-A3Y7-01 10 63851570 63851570 C T ARID5B Missense_Mutation p.P783L 0.22 deleterious(0.02) benign(0.039) TCGA-EB-A3Y7-01 10 64148254 64148254 G A ZNF365 Silent p.R281R 0.25 TCGA-EB-A3Y7-01 10 69934204 69934204 C T MYPN Silent p.L785L 0.27 TCGA-EB-A3Y7-01 10 70405383 70405383 A T TET1 Missense_Mutation p.N966I 0.22 deleterious(0.03) benign(0.068) TCGA-EB-A3Y7-01 10 70405384 70405384 C T TET1 Silent p.N966N 0.21 TCGA-EB-A3Y7-01 10 71008399 71008399 G A HKDC1 Silent p.L495L 0.23 TCGA-EB-A3Y7-01 10 72358116 72358116 C T PRF1 Nonsense_Mutation p.W454* 0.22 TCGA-EB-A3Y7-01 10 72434478 72434478 C T ADAMTS14 Silent p.L83L 0.29 TCGA-EB-A3Y7-01 10 73122231 73122231 C T SLC29A3 Silent p.L432L 0.14 TCGA-EB-A3Y7-01 10 73466816 73466816 C T C10orf105 3'Flank 0.44 TCGA-EB-A3Y7-01 10 73501510 73501510 C T CDH23 Silent p.I1564I 0.38 TCGA-EB-A3Y7-01 10 75487069 75487069 G A RP11-464F9.1 RNA 0.28 TCGA-EB-A3Y7-01 10 75673478 75673478 C T PLAU Silent p.I214I 0.33 TCGA-EB-A3Y7-01 10 7605180 7605180 C T ITIH5 Missense_Mutation p.E899K 0.26 tolerated(0.68) benign(0.037) TCGA-EB-A3Y7-01 10 81272736 81272736 G A EIF5AL1 Missense_Mutation p.D111N 0.25 deleterious(0.03) possibly_damaging(0.629) TCGA-EB-A3Y7-01 10 90503044 90503044 G A LIPK Missense_Mutation p.G309E 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3Y7-01 10 94824278 94824278 C T CYP26C1 Silent p.S282S 0.30 TCGA-EB-A3Y7-01 10 95422929 95422929 G A PDE6C Missense_Mutation p.E838K 0.25 tolerated(1) benign(0.001) TCGA-EB-A3Y7-01 10 96448000 96448000 C G CYP2C18 Silent p.R150R 0.17 TCGA-EB-A3Y7-01 10 96731966 96731966 G T CYP2C9 Missense_Mutation p.A309S 0.23 tolerated(0.11) benign(0.27) TCGA-EB-A3Y7-01 10 96829157 96829157 C T CYP2C8 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.971) TCGA-EB-A3Y7-01 10 97917175 97917175 C A ZNF518A RNA 0.30 TCGA-EB-A3Y7-01 10 99338023 99338023 C T ANKRD2 Silent p.S99S 0.32 TCGA-EB-A3Y7-01 11 104774256 104774256 G A RP11-693N9.2 RNA 0.40 TCGA-EB-A3Y7-01 11 108381054 108381054 C T EXPH5 Missense_Mutation p.R1727K 0.36 tolerated(0.63) benign(0.033) TCGA-EB-A3Y7-01 11 108712202 108712202 G A DDX10 Missense_Mutation p.R749Q 0.36 deleterious(0.02) benign(0.104) TCGA-EB-A3Y7-01 11 117691306 117691306 G A FXYD2 Intron 0.50 TCGA-EB-A3Y7-01 11 119149250 119149250 C G CBL Missense_Mutation p.R420G 0.30 deleterious(0) probably_damaging(0.989) TCGA-EB-A3Y7-01 11 120008291 120008291 C T TRIM29 Missense_Mutation p.R150Q 0.40 tolerated(0.07) benign(0.042) TCGA-EB-A3Y7-01 11 12229589 12229589 C T MICAL2 Silent p.L164L 0.35 TCGA-EB-A3Y7-01 11 122669690 122669690 C T UBASH3B Silent p.V466V 0.40 TCGA-EB-A3Y7-01 11 124121119 124121119 G A OR8G1 Missense_Mutation p.G233S 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.823) TCGA-EB-A3Y7-01 11 124310103 124310103 C T OR8B8 Silent p.R293R 0.48 TCGA-EB-A3Y7-01 11 128391956 128391956 T A ETS1 Intron 0.57 TCGA-EB-A3Y7-01 11 134253704 134253704 G C B3GAT1 Missense_Mutation p.P164R 0.33 deleterious(0) benign(0.183) TCGA-EB-A3Y7-01 11 15994426 15994426 C A SOX6 Missense_Mutation p.D786Y 0.29 tolerated(0.07) probably_damaging(1) TCGA-EB-A3Y7-01 11 1718825 1718825 C T KRTAP5-6 Missense_Mutation p.A117V 0.40 tolerated_low_confidence(0.06) unknown(0) TCGA-EB-A3Y7-01 11 17331140 17331140 C T NUCB2 Missense_Mutation p.A134V 0.38 tolerated(0.15) benign(0.392) TCGA-EB-A3Y7-01 11 18048148 18048148 G A TPH1 Missense_Mutation p.P231L 0.50 deleterious(0) probably_damaging(0.921) TCGA-EB-A3Y7-01 11 2185437 2185437 G A TH 3'UTR 0.38 TCGA-EB-A3Y7-01 11 22696351 22696351 G A GAS2 Intron 0.60 TCGA-EB-A3Y7-01 11 27695613 27695613 G A BDNF Silent p.F73F 0.20 TCGA-EB-A3Y7-01 11 30601881 30601881 T - MPPED2 Frame_Shift_Del p.T14Rfs*90 0.40 TCGA-EB-A3Y7-01 11 31115633 31115633 G A DCDC1 Silent p.I694I 0.24 TCGA-EB-A3Y7-01 11 35208378 35208396 GCTCCACCTGAAGAAGATT - CD44 Splice_Site p.X123_splice 0.16 TCGA-EB-A3Y7-01 11 35333778 35333778 G A SLC1A2 Silent p.F176F 0.39 TCGA-EB-A3Y7-01 11 46911949 46911949 G A LRP4 Silent p.F598F 0.24 TCGA-EB-A3Y7-01 11 46911970 46911970 G A LRP4 Silent p.I591I 0.20 TCGA-EB-A3Y7-01 11 47360202 47360202 C T MYBPC3 Missense_Mutation p.R726H 0.31 tolerated(0.35) benign(0.011) TCGA-EB-A3Y7-01 11 48164473 48164473 C T PTPRJ Missense_Mutation p.P816S 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 11 4825002 4825002 G A OR52R1 Silent p.L203L 0.36 TCGA-EB-A3Y7-01 11 5020659 5020659 C T OR51L1 Silent p.A149A 0.36 TCGA-EB-A3Y7-01 11 5067953 5067953 C T OR52J3 Silent p.A66A 0.38 TCGA-EB-A3Y7-01 11 5322600 5322600 G A OR51B4 Missense_Mutation p.H193Y 0.42 tolerated(0.32) benign(0.222) TCGA-EB-A3Y7-01 11 5443556 5443556 G A OR51Q1 Missense_Mutation p.M42I 0.38 tolerated(0.22) benign(0.002) TCGA-EB-A3Y7-01 11 55062972 55062972 C T TRIM51HP RNA 0.40 TCGA-EB-A3Y7-01 11 55594880 55594880 C T OR5L2 Silent p.F62F 0.39 TCGA-EB-A3Y7-01 11 5602847 5602847 C T OR52B6 Silent p.L247L 0.40 TCGA-EB-A3Y7-01 11 5758583 5758583 G A OR56B1 Silent p.L279L 0.40 TCGA-EB-A3Y7-01 11 58189898 58189898 G A OR5B2 Silent p.I279I 0.40 TCGA-EB-A3Y7-01 11 58384678 58384678 C A ZFP91 Silent p.I404I 0.45 TCGA-EB-A3Y7-01 11 6007653 6007653 C T OR52L1 Missense_Mutation p.G170R 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 11 609122 609122 C T PHRF1 Silent p.A1221A 0.27 TCGA-EB-A3Y7-01 11 61079480 61079480 G A DDB1 Missense_Mutation p.P716S 0.38 deleterious(0.03) possibly_damaging(0.878) TCGA-EB-A3Y7-01 11 62298103 62298103 A G AHNAK Silent p.F1262F 0.40 TCGA-EB-A3Y7-01 11 6244974 6244974 G A FAM160A2 Missense_Mutation p.R215C 0.33 deleterious(0.01) benign(0.002) TCGA-EB-A3Y7-01 11 63970966 63970966 C T STIP1 Silent p.N477N 0.19 TCGA-EB-A3Y7-01 11 63970967 63970967 C T STIP1 Missense_Mutation p.R478W 0.19 tolerated(0.18) possibly_damaging(0.821) TCGA-EB-A3Y7-01 11 64525970 64525970 C T PYGM Silent p.E121E 0.36 TCGA-EB-A3Y7-01 11 64533020 64533020 G A SF1 Intron 0.34 TCGA-EB-A3Y7-01 11 65046257 65046257 C T POLA2 Missense_Mutation p.S173F 0.39 deleterious(0.05) benign(0.171) TCGA-EB-A3Y7-01 11 6661762 6661762 G A DCHS1 Silent p.S361S 0.39 TCGA-EB-A3Y7-01 11 674722 674722 G A DEAF1 Silent p.P439P 0.41 TCGA-EB-A3Y7-01 11 6806314 6806314 G A OR2AG1 Missense_Mutation p.G16R 0.33 deleterious(0) probably_damaging(0.925) TCGA-EB-A3Y7-01 11 78369190 78369190 G A TENM4 Silent p.F2741F 0.36 TCGA-EB-A3Y7-01 11 78380506 78380506 C T TENM4 Missense_Mutation p.G2295D 0.39 tolerated(0.11) probably_damaging(0.998) TCGA-EB-A3Y7-01 11 82921396 82921396 C T ANKRD42 Missense_Mutation p.P101S 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 11 8414189 8414189 G A STK33 Silent p.F471F 0.35 TCGA-EB-A3Y7-01 11 92087123 92087123 C T FAT3 Silent p.I615I 0.25 TCGA-EB-A3Y7-01 11 94352981 94352981 G A PIWIL4 Missense_Mutation p.E742K 0.32 tolerated(0.07) benign(0.041) TCGA-EB-A3Y7-01 11 9450137 9450137 C T IPO7 Silent p.F462F 0.31 TCGA-EB-A3Y7-01 12 100042400 100042400 C T FAM71C Missense_Mutation p.L150F 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-EB-A3Y7-01 12 101555823 101555823 G A SLC5A8 Missense_Mutation p.S520L 0.19 deleterious(0) possibly_damaging(0.847) TCGA-EB-A3Y7-01 12 101598331 101598331 G A SLC5A8 Nonsense_Mutation p.R122* 0.13 TCGA-EB-A3Y7-01 12 105462592 105462592 G A ALDH1L2 Missense_Mutation p.P167S 0.28 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EB-A3Y7-01 12 10783764 10783764 C T STYK1 Missense_Mutation p.E111K 0.33 deleterious(0.01) possibly_damaging(0.524) TCGA-EB-A3Y7-01 12 108010929 108010929 G A BTBD11 Missense_Mutation p.E689K 0.19 tolerated(0.06) probably_damaging(0.91) TCGA-EB-A3Y7-01 12 108686094 108686094 G A CMKLR1 Missense_Mutation p.R216W 0.31 tolerated(0.07) benign(0.052) TCGA-EB-A3Y7-01 12 109055861 109055861 T G CORO1C Missense_Mutation p.K131T 0.16 deleterious(0) probably_damaging(0.992) TCGA-EB-A3Y7-01 12 109577350 109577350 C T ACACB Missense_Mutation p.P47L 0.21 deleterious_low_confidence(0.04) benign(0.05) TCGA-EB-A3Y7-01 12 109684067 109684067 C T ACACB Silent p.I1795I 0.26 TCGA-EB-A3Y7-01 12 109865287 109865287 C T MYO1H Silent p.D599D 0.28 TCGA-EB-A3Y7-01 12 110232227 110232227 G A TRPV4 Silent p.F466F 0.29 TCGA-EB-A3Y7-01 12 110429486 110429486 A T GIT2 Missense_Mutation p.H44Q 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 12 11183233 11183233 G A TAS2R31 Silent p.F234F 0.28 TCGA-EB-A3Y7-01 12 112647993 112647993 G A HECTD4 Missense_Mutation p.R2419C 0.27 probably_damaging(0.973) TCGA-EB-A3Y7-01 12 113307833 113307833 G A RPH3A Missense_Mutation p.R262Q 0.24 tolerated(0.26) benign(0.003) TCGA-EB-A3Y7-01 12 113307834 113307834 G A RPH3A Silent p.R262R 0.24 TCGA-EB-A3Y7-01 12 113325639 113325639 G A RPH3A Missense_Mutation p.E492K 0.27 deleterious(0.03) probably_damaging(0.913) TCGA-EB-A3Y7-01 12 113386869 113386869 C T OAS3 Silent p.I411I 0.33 TCGA-EB-A3Y7-01 12 113425034 113425034 C T OAS2 Silent p.S123S 0.21 TCGA-EB-A3Y7-01 12 114404173 114404173 G A RBM19 5'Flank 0.45 TCGA-EB-A3Y7-01 12 118293339 118293339 C T KSR2 Missense_Mutation p.M122I 0.30 deleterious(0.02) benign(0.222) TCGA-EB-A3Y7-01 12 118651913 118651913 C T TAOK3 Missense_Mutation p.E216K 0.22 deleterious(0.02) possibly_damaging(0.812) TCGA-EB-A3Y7-01 12 119954456 119954456 G A CCDC60 Silent p.R304R 0.15 TCGA-EB-A3Y7-01 12 121471539 121471539 G A OASL Missense_Mutation p.S69F 0.36 deleterious(0) possibly_damaging(0.824) TCGA-EB-A3Y7-01 12 122622027 122622027 C T MLXIP Missense_Mutation p.P682S 0.30 tolerated(0.08) benign(0.002) TCGA-EB-A3Y7-01 12 124171396 124171396 A C TCTN2 Missense_Mutation p.N193T 0.31 tolerated(0.05) benign(0.014) TCGA-EB-A3Y7-01 12 124496988 124496988 C A ZNF664 Missense_Mutation p.S99R 0.21 tolerated(0.21) benign(0.05) TCGA-EB-A3Y7-01 12 126138849 126138849 G A TMEM132B Missense_Mutation p.D944N 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 12 129558854 129558854 C T TMEM132D Missense_Mutation p.E956K 0.31 tolerated(0.26) possibly_damaging(0.596) TCGA-EB-A3Y7-01 12 129559271 129559271 G A TMEM132D Missense_Mutation p.H817Y 0.18 deleterious(0.01) benign(0.189) TCGA-EB-A3Y7-01 12 130927206 130927206 C T RIMBP2 Splice_Site p.X214_splice 0.21 TCGA-EB-A3Y7-01 12 131283178 131283178 A C STX2 Silent p.G226G 0.22 TCGA-EB-A3Y7-01 12 131357670 131357670 C T RAN Nonsense_Mutation p.Q82* 0.26 TCGA-EB-A3Y7-01 12 14943503 14943503 G A WBP11 Missense_Mutation p.P399L 0.31 tolerated_low_confidence(0.08) unknown(0) TCGA-EB-A3Y7-01 12 18238593 18238593 C T RERGL Silent p.R49R 0.27 TCGA-EB-A3Y7-01 12 21175805 21175805 C T SLCO1B7 Missense_Mutation p.S121L 0.16 deleterious(0.04) possibly_damaging(0.781) TCGA-EB-A3Y7-01 12 21349921 21349921 G A SLCO1B1 Missense_Mutation p.A257T 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 12 21472326 21472326 C T SLCO1A2 Intron 0.22 TCGA-EB-A3Y7-01 12 21472327 21472327 C T SLCO1A2 Intron 0.22 TCGA-EB-A3Y7-01 12 21971127 21971127 G A ABCC9 Missense_Mutation p.S1243L 0.27 tolerated(1) benign(0.001) TCGA-EB-A3Y7-01 12 27543155 27543155 C T ARNTL2 Missense_Mutation p.P301L 0.27 deleterious(0.03) benign(0.027) TCGA-EB-A3Y7-01 12 40693049 40693049 G A LRRK2 Missense_Mutation p.M1162I 0.26 tolerated(0.55) benign(0.001) TCGA-EB-A3Y7-01 12 4409094 4409094 G A CCND2 Silent p.Q263Q 0.17 TCGA-EB-A3Y7-01 12 47170749 47170749 G A SLC38A4 Missense_Mutation p.S371F 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 12 48251023 48251023 G A VDR Missense_Mutation p.R208C 0.21 tolerated(0.05) probably_damaging(0.969) TCGA-EB-A3Y7-01 12 48468505 48468505 T A SENP1 Silent p.I208I 0.32 TCGA-EB-A3Y7-01 12 48866445 48866445 G A ANP32D 5'Flank 0.24 TCGA-EB-A3Y7-01 12 48880488 48880488 C T C12orf54 Silent p.I38I 0.24 TCGA-EB-A3Y7-01 12 49433863 49433863 T G KMT2D Missense_Mutation p.S2564R 0.36 probably_damaging(0.948) TCGA-EB-A3Y7-01 12 49444514 49444514 G A KMT2D Missense_Mutation p.P953S 0.23 unknown(0) TCGA-EB-A3Y7-01 12 49689178 49689178 G A PRPH Silent p.A65A 0.31 TCGA-EB-A3Y7-01 12 50295165 50295165 C T FAIM2 Intron 0.30 TCGA-EB-A3Y7-01 12 50359003 50359003 G A AQP5 3'UTR 0.21 TCGA-EB-A3Y7-01 12 51394183 51394183 C G SLC11A2 Missense_Mutation p.W179S 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 12 51632556 51632556 C T DAZAP2 5'Flank 0.53 TCGA-EB-A3Y7-01 12 52159603 52159603 G A SCN8A Missense_Mutation p.G898E 0.31 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 12 52284643 52284643 C T ANKRD33 Silent p.L305L 0.21 TCGA-EB-A3Y7-01 12 52840862 52840862 C T KRT6B 3'UTR 0.29 TCGA-EB-A3Y7-01 12 52842644 52842644 G A KRT6B Silent p.I395I 0.28 TCGA-EB-A3Y7-01 12 52910933 52910933 C T KRT5 Missense_Mutation p.M392I 0.23 deleterious(0.04) benign(0.038) TCGA-EB-A3Y7-01 12 53073541 53073541 C T KRT1 Splice_Site p.X197_splice 0.31 TCGA-EB-A3Y7-01 12 53825305 53825305 G A AMHR2 3'UTR 0.23 TCGA-EB-A3Y7-01 12 55886972 55886972 G A OR6C68 Missense_Mutation p.G271S 0.16 tolerated_low_confidence(0.11) possibly_damaging(0.476) TCGA-EB-A3Y7-01 12 56030944 56030944 C T OR10P1 Missense_Mutation p.P90L 0.26 tolerated(0.08) benign(0.013) TCGA-EB-A3Y7-01 12 57008860 57008860 G A BAZ2A Missense_Mutation p.S225L 0.31 tolerated(0.1) benign(0.2) TCGA-EB-A3Y7-01 12 57110355 57110355 G A NACA Intron 0.17 TCGA-EB-A3Y7-01 12 57110356 57110356 G A NACA Intron 0.18 TCGA-EB-A3Y7-01 12 57111199 57111199 G A NACA Intron 0.21 TCGA-EB-A3Y7-01 12 57599181 57599181 G A LRP1 Missense_Mutation p.E3795K 0.15 benign(0.359) TCGA-EB-A3Y7-01 12 57865330 57865330 T C GLI1 Missense_Mutation p.V936A 0.24 tolerated_low_confidence(0.91) benign(0.003) TCGA-EB-A3Y7-01 12 58001257 58001257 G A DTX3 Missense_Mutation p.R204H 0.27 deleterious(0.04) benign(0.036) TCGA-EB-A3Y7-01 12 62949871 62949871 C T MON2 Missense_Mutation p.S1103L 0.25 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y7-01 12 6692131 6692131 C T CHD4 Intron 0.32 TCGA-EB-A3Y7-01 12 70004285 70004285 C T LRRC10 Missense_Mutation p.D112N 0.29 tolerated(0.42) benign(0.017) TCGA-EB-A3Y7-01 12 70189094 70189094 G A RAB3IP Silent p.V302V 0.27 TCGA-EB-A3Y7-01 12 70195462 70195462 G A RAB3IP Missense_Mutation p.R380Q 0.29 tolerated(0.07) benign(0.137) TCGA-EB-A3Y7-01 12 7024988 7024988 C T ENO2 5'UTR 0.28 TCGA-EB-A3Y7-01 12 70928703 70928703 C T PTPRB Silent p.Q2038Q 0.41 TCGA-EB-A3Y7-01 12 70980944 70980944 G A PTPRB Silent p.S718S 0.21 TCGA-EB-A3Y7-01 12 73046174 73046174 C T TRHDE Silent p.F871F 0.20 TCGA-EB-A3Y7-01 12 7522042 7522042 C T CD163L1 Missense_Mutation p.G1317E 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 12 7637976 7637976 C T CD163 Missense_Mutation p.R832K 0.30 tolerated(0.36) benign(0.013) TCGA-EB-A3Y7-01 12 7843261 7843261 G A GDF3 Missense_Mutation p.S103F 0.23 tolerated(0.72) benign(0.027) TCGA-EB-A3Y7-01 12 78574739 78574739 C T NAV3 Missense_Mutation p.S1847F 0.34 tolerated(0.37) probably_damaging(0.998) TCGA-EB-A3Y7-01 12 7867879 7867879 C T DPPA3 Silent p.L61L 0.35 TCGA-EB-A3Y7-01 12 7867880 7867880 C T DPPA3 Missense_Mutation p.R62C 0.35 deleterious(0.01) benign(0.091) TCGA-EB-A3Y7-01 12 7868835 7868835 G A DPPA3 Silent p.K123K 0.32 TCGA-EB-A3Y7-01 12 8050874 8050874 T A NANOGP1 RNA 0.30 TCGA-EB-A3Y7-01 12 8050876 8050876 C T NANOGP1 RNA 0.30 TCGA-EB-A3Y7-01 12 80633147 80633147 T G OTOGL Missense_Mutation p.F318C 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A3Y7-01 12 80714217 80714217 C T OTOGL Missense_Mutation p.S1264F 0.34 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y7-01 12 80771688 80771688 G A OTOGL Missense_Mutation p.E2299K 0.33 deleterious(0) benign(0.113) TCGA-EB-A3Y7-01 12 81719594 81719594 G A PPFIA2 Silent p.L868L 0.18 TCGA-EB-A3Y7-01 12 8666217 8666217 G A CLEC4D 5'UTR 0.24 TCGA-EB-A3Y7-01 12 9260155 9260155 C T A2M Missense_Mutation p.D282N 0.14 tolerated(0.16) benign(0.001) TCGA-EB-A3Y7-01 12 9264799 9264799 G A A2M Missense_Mutation p.R147C 0.28 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 12 93100806 93100806 C T C12orf74 Silent p.L133L 0.31 TCGA-EB-A3Y7-01 12 94976112 94976112 G A TMCC3 Missense_Mutation p.A94V 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A3Y7-01 12 95604014 95604014 G A FGD6 Missense_Mutation p.S349F 0.30 tolerated_low_confidence(0.62) benign(0.009) TCGA-EB-A3Y7-01 12 96131740 96131740 G A NTN4 Silent p.F256F 0.20 TCGA-EB-A3Y7-01 12 96728589 96728589 G A CDK17 Missense_Mutation p.S9F 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 12 97078808 97078808 G A C12orf55 Missense_Mutation p.A1936T 0.20 tolerated(0.08) benign(0.065) TCGA-EB-A3Y7-01 13 100992431 100992431 G A PCCA Missense_Mutation p.E521K 0.36 tolerated(0.06) benign(0.356) TCGA-EB-A3Y7-01 13 114773045 114773045 G T RASA3 Missense_Mutation p.P569H 0.15 tolerated(0.27) benign(0.001) TCGA-EB-A3Y7-01 13 25362132 25362132 G A RNF17 Silent p.K206K 0.25 TCGA-EB-A3Y7-01 13 33628001 33628001 G A KL Missense_Mutation p.R306Q 0.43 tolerated(0.92) benign(0.015) TCGA-EB-A3Y7-01 13 58299271 58299271 G A PCDH17 Missense_Mutation p.S1108N 0.42 tolerated_low_confidence(0.18) possibly_damaging(0.858) TCGA-EB-A3Y7-01 13 84454471 84454471 C T SLITRK1 Missense_Mutation p.R391Q 0.38 tolerated(0.13) benign(0.03) TCGA-EB-A3Y7-01 13 86370397 86370397 C T SLITRK6 Missense_Mutation p.D83N 0.41 deleterious(0.04) benign(0.227) TCGA-EB-A3Y7-01 13 97485076 97485076 A G HS6ST3 Missense_Mutation p.N347S 0.42 tolerated(0.26) benign(0.336) TCGA-EB-A3Y7-01 14 100589882 100589882 C T EVL Missense_Mutation p.S122F 0.21 deleterious(0.05) possibly_damaging(0.5) TCGA-EB-A3Y7-01 14 101349370 101349370 C T RTL1 Missense_Mutation p.D586N 0.19 tolerated(0.19) probably_damaging(0.995) TCGA-EB-A3Y7-01 14 101518782 101518782 C T MIR544A 3'Flank 0.32 TCGA-EB-A3Y7-01 14 102500436 102500436 T C DYNC1H1 Missense_Mutation p.F3513L 0.26 probably_damaging(0.973) TCGA-EB-A3Y7-01 14 105411898 105411898 G T AHNAK2 Missense_Mutation p.A3297D 0.25 possibly_damaging(0.855) TCGA-EB-A3Y7-01 14 105412393 105412393 G T AHNAK2 Missense_Mutation p.A3132D 0.25 probably_damaging(0.943) TCGA-EB-A3Y7-01 14 106733154 106733156 TAA - IGHV1-24 In_Frame_Del p.Y114del 0.28 TCGA-EB-A3Y7-01 14 106878027 106878027 A G IGHV4-39 Missense_Mutation p.L17P 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A3Y7-01 14 106994241 106994241 G A IGHV3-48 Silent p.F9F 0.27 TCGA-EB-A3Y7-01 14 107048837 107048837 C T IGHV3-53 Silent p.G61G 0.17 TCGA-EB-A3Y7-01 14 107179230 107179230 C T IGHV2-70 Silent p.L11L 0.12 TCGA-EB-A3Y7-01 14 20249009 20249009 T C OR4M1 Silent p.S176S 0.18 TCGA-EB-A3Y7-01 14 20404440 20404440 G A OR4K1 Silent p.L205L 0.22 TCGA-EB-A3Y7-01 14 20586552 20586552 G A OR4K17 Missense_Mutation p.M329I 0.27 tolerated(0.14) benign(0.044) TCGA-EB-A3Y7-01 14 20692813 20692813 G A OR11H6 Missense_Mutation p.M315I 0.18 tolerated(0.09) benign(0.049) TCGA-EB-A3Y7-01 14 20842626 20842626 G A TEP1 Silent p.L2145L 0.44 TCGA-EB-A3Y7-01 14 21108901 21108901 C T OR6S1 Missense_Mutation p.G317E 0.24 tolerated(1) benign(0) TCGA-EB-A3Y7-01 14 21238401 21238401 G A EDDM3B Missense_Mutation p.R31K 0.24 tolerated(0.32) probably_damaging(0.973) TCGA-EB-A3Y7-01 14 21469490 21469490 A T SLC39A2 Missense_Mutation p.I228L 0.27 tolerated(0.36) benign(0.078) TCGA-EB-A3Y7-01 14 21469491 21469491 T A SLC39A2 Missense_Mutation p.I228K 0.27 deleterious(0) probably_damaging(0.917) TCGA-EB-A3Y7-01 14 22237200 22237200 G A TRAV6 Missense_Mutation p.E93K 0.31 tolerated(0.79) possibly_damaging(0.55) TCGA-EB-A3Y7-01 14 22392635 22392635 G A TRAV14DV4 Missense_Mutation p.G53D 0.26 TCGA-EB-A3Y7-01 14 22555137 22555137 G A TRAV23DV6 Missense_Mutation p.G88E 0.47 tolerated(0.08) probably_damaging(0.922) TCGA-EB-A3Y7-01 14 22564822 22564822 G A TRDV1 Silent p.A91A 0.20 TCGA-EB-A3Y7-01 14 22690278 22690278 G A TRAV35 Silent p.L79L 0.34 TCGA-EB-A3Y7-01 14 23861798 23861798 T C MYH6 Silent p.Q1105Q 0.21 TCGA-EB-A3Y7-01 14 24523306 24523306 T C LRRC16B Missense_Mutation p.S49P 0.22 deleterious(0.01) benign(0.326) TCGA-EB-A3Y7-01 14 24792231 24792231 C T ADCY4 Missense_Mutation p.E741K 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A3Y7-01 14 24880378 24880378 C T NYNRIN Silent p.P837P 0.24 TCGA-EB-A3Y7-01 14 34269466 34269466 G C NPAS3 Missense_Mutation p.E651D 0.38 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-EB-A3Y7-01 14 37132657 37132657 C T PAX9 Missense_Mutation p.A187V 0.36 tolerated(0.09) benign(0.379) TCGA-EB-A3Y7-01 14 37132658 37132658 C T PAX9 Silent p.A187A 0.35 TCGA-EB-A3Y7-01 14 39562435 39562435 G A SEC23A Nonsense_Mutation p.R79* 0.26 TCGA-EB-A3Y7-01 14 45564426 45564426 C T PRPF39 Intron 0.28 TCGA-EB-A3Y7-01 14 51060569 51060569 T G ATL1 Nonsense_Mutation p.Y176* 0.12 TCGA-EB-A3Y7-01 14 60600937 60600937 T C PCNXL4 Nonstop_Mutation p.*939Qext*4 0.23 TCGA-EB-A3Y7-01 14 64467425 64467425 C T SYNE2 Missense_Mutation p.T1209I 0.19 benign(0.117) TCGA-EB-A3Y7-01 14 65249267 65249267 C T SPTB Missense_Mutation p.G1336E 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 14 65270385 65270385 A C SPTB Missense_Mutation p.I138M 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 14 65271785 65271785 T A SPTB Nonsense_Mutation p.K58* 0.34 TCGA-EB-A3Y7-01 14 67857385 67857405 AAGGGTCATAGTAATGCAGGA - PLEK2 In_Frame_Del p.F277_P283del 0.33 TCGA-EB-A3Y7-01 14 69704450 69704450 C T EXD2 Missense_Mutation p.P484L 0.26 deleterious(0) probably_damaging(0.995) TCGA-EB-A3Y7-01 14 70714206 70714206 G A ADAM21P1 RNA 0.18 TCGA-EB-A3Y7-01 14 70924388 70924388 C T ADAM21 Missense_Mutation p.P58S 0.09 tolerated(0.18) benign(0.05) TCGA-EB-A3Y7-01 14 70925048 70925048 G A ADAM21 Missense_Mutation p.D278N 0.24 tolerated(0.28) benign(0.021) TCGA-EB-A3Y7-01 14 72939588 72939588 G A RGS6 Missense_Mutation p.R182Q 0.23 deleterious(0) benign(0.069) TCGA-EB-A3Y7-01 14 74711961 74711961 G A VSX2 Missense_Mutation p.M183I 0.31 deleterious(0.04) benign(0.232) TCGA-EB-A3Y7-01 14 75277070 75277070 T G YLPM1 Silent p.V1725V 0.29 TCGA-EB-A3Y7-01 14 76232512 76232512 G A TTLL5 Missense_Mutation p.E606K 0.22 tolerated(0.23) benign(0.15) TCGA-EB-A3Y7-01 14 79117518 79117518 C T NRXN3 5'UTR 0.25 TCGA-EB-A3Y7-01 14 81046754 81046754 C T CEP128 Silent p.E940E 0.20 TCGA-EB-A3Y7-01 14 81422112 81422112 G A TSHR Missense_Mutation p.E30K 0.22 tolerated(0.2) benign(0.004) TCGA-EB-A3Y7-01 14 91681813 91681813 C T C14orf159 Silent p.V543V 0.27 TCGA-EB-A3Y7-01 14 91681814 91681814 C T C14orf159 Missense_Mutation p.H544Y 0.28 deleterious(0.04) possibly_damaging(0.86) TCGA-EB-A3Y7-01 14 91681844 91681844 C T C14orf159 Missense_Mutation p.P554S 0.21 tolerated(0.4) benign(0.034) TCGA-EB-A3Y7-01 14 91681845 91681845 C T C14orf159 Missense_Mutation p.P554L 0.22 tolerated(0.68) benign(0.012) TCGA-EB-A3Y7-01 14 93730271 93730271 G A BTBD7 Missense_Mutation p.H411Y 0.26 deleterious(0) benign(0.097) TCGA-EB-A3Y7-01 14 94088518 94088518 G A UNC79 Missense_Mutation p.E1470K 0.30 deleterious_low_confidence(0) benign(0.318) TCGA-EB-A3Y7-01 14 95085740 95085740 G A SERPINA3 Missense_Mutation p.M284I 0.10 deleterious(0.05) benign(0.184) TCGA-EB-A3Y7-01 15 20649482 20649482 G A HERC2P3 Intron 0.29 TCGA-EB-A3Y7-01 15 22368931 22368931 C T OR4M2 Missense_Mutation p.A119V 0.15 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 15 22368932 22368932 C T OR4M2 Silent p.A119A 0.15 TCGA-EB-A3Y7-01 15 22368983 22368983 G A OR4M2 Missense_Mutation p.M136I 0.18 deleterious(0.01) benign(0.017) TCGA-EB-A3Y7-01 15 22849069 22849069 C T TUBGCP5 Silent p.F372F 0.24 TCGA-EB-A3Y7-01 15 25324053 25324053 C T SNORD116-12 3'Flank 0.29 TCGA-EB-A3Y7-01 15 25440079 25440079 G A SNORD115-14 RNA 0.25 TCGA-EB-A3Y7-01 15 25468263 25468263 C T SNORD115-27 3'Flank 0.36 TCGA-EB-A3Y7-01 15 25616538 25616538 T A UBE3A Silent p.S264S 0.21 TCGA-EB-A3Y7-01 15 32988793 32988793 G A SCG5 Missense_Mutation p.D208N 0.25 tolerated_low_confidence(0.06) benign(0.001) TCGA-EB-A3Y7-01 15 33357265 33357265 C T FMN1 Missense_Mutation p.S462N 0.28 deleterious(0) unknown(0) TCGA-EB-A3Y7-01 15 35178764 35178764 T C AQR Missense_Mutation p.Y927C 0.37 deleterious(0) probably_damaging(0.992) TCGA-EB-A3Y7-01 15 38243273 38243273 C T TMCO5A Silent p.F235F 0.33 TCGA-EB-A3Y7-01 15 39874403 39874403 G A THBS1 Missense_Mutation p.G26E 0.33 tolerated_low_confidence(0.62) benign(0.002) TCGA-EB-A3Y7-01 15 40005692 40005692 G A FSIP1 Missense_Mutation p.R381W 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 15 40565787 40565787 C T PAK6 Silent p.I551I 0.25 TCGA-EB-A3Y7-01 15 40581068 40581068 C T PLCB2 Missense_Mutation p.A1136T 0.28 tolerated(0.37) benign(0.019) TCGA-EB-A3Y7-01 15 41870240 41870240 C G TYRO3 Silent p.P813P 0.13 TCGA-EB-A3Y7-01 15 42021428 42021428 C T MGA Nonsense_Mutation p.R1242* 0.34 TCGA-EB-A3Y7-01 15 42742955 42742955 G A ZNF106 Silent p.S482S 0.24 TCGA-EB-A3Y7-01 15 43584942 43584942 C T TGM7 Missense_Mutation p.G135E 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 15 44063392 44063392 G C PDIA3 Missense_Mutation p.K498N 0.16 tolerated(0.09) benign(0.137) TCGA-EB-A3Y7-01 15 50497467 50497467 A C SLC27A2 Silent p.S293S 0.16 TCGA-EB-A3Y7-01 15 51755594 51755594 C T DMXL2 Silent p.K2636K 0.31 TCGA-EB-A3Y7-01 15 54305307 54305307 T C UNC13C Silent p.C69C 0.25 TCGA-EB-A3Y7-01 15 55971599 55971599 G A PRTG Nonsense_Mutation p.R340* 0.24 TCGA-EB-A3Y7-01 15 55972740 55972740 C T PRTG Missense_Mutation p.E255K 0.27 deleterious(0) probably_damaging(0.964) TCGA-EB-A3Y7-01 15 56387725 56387725 G A RFX7 Missense_Mutation p.S734F 0.27 deleterious_low_confidence(0) benign(0.173) TCGA-EB-A3Y7-01 15 58285000 58285000 C T ALDH1A2 Missense_Mutation p.G234E 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 15 59146706 59146706 C T FAM63B Missense_Mutation p.P588L 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A3Y7-01 15 59784572 59784572 C T FAM81A Nonsense_Mutation p.R133* 0.33 TCGA-EB-A3Y7-01 15 59813483 59813483 C T FAM81A Missense_Mutation p.S338F 0.28 deleterious(0.02) possibly_damaging(0.828) TCGA-EB-A3Y7-01 15 59911232 59911232 G A GCNT3 Nonsense_Mutation p.W265* 0.28 TCGA-EB-A3Y7-01 15 62539510 62539510 C T AC126323.1 5'Flank 0.23 TCGA-EB-A3Y7-01 15 64275839 64275839 C T DAPK2 Silent p.E69E 0.32 TCGA-EB-A3Y7-01 15 65563312 65563312 G A PARP16 Silent p.S91S 0.31 TCGA-EB-A3Y7-01 15 71124511 71124511 G A LARP6 Silent p.P452P 0.25 TCGA-EB-A3Y7-01 15 71124512 71124512 G A LARP6 Missense_Mutation p.P452L 0.25 deleterious(0.04) possibly_damaging(0.893) TCGA-EB-A3Y7-01 15 71433815 71433815 A T THSD4 5'UTR 0.27 TCGA-EB-A3Y7-01 15 72190946 72190946 G A MYO9A Missense_Mutation p.P1300S 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-EB-A3Y7-01 15 75013300 75013300 G A CYP1A1 Intron 0.28 TCGA-EB-A3Y7-01 15 75981156 75981156 G A CSPG4 Silent p.H750H 0.28 TCGA-EB-A3Y7-01 15 75981157 75981157 T A CSPG4 Missense_Mutation p.H750L 0.28 deleterious(0.04) benign(0.071) TCGA-EB-A3Y7-01 15 76072977 76072977 G A RN7SL319P 5'Flank 0.32 TCGA-EB-A3Y7-01 15 83221347 83221347 G A CPEB1 Silent p.F361F 0.27 TCGA-EB-A3Y7-01 15 83331509 83331509 C T AP3B2 Missense_Mutation p.G905S 0.32 tolerated(0.44) possibly_damaging(0.855) TCGA-EB-A3Y7-01 15 83933326 83933326 T C BNC1 Missense_Mutation p.N226S 0.27 tolerated(0.93) benign(0.002) TCGA-EB-A3Y7-01 15 93588852 93588852 G A RGMA Silent p.F251F 0.33 TCGA-EB-A3Y7-01 16 11941610 11941610 T C RSL1D1 Missense_Mutation p.K100R 0.26 tolerated(0.09) probably_damaging(0.922) TCGA-EB-A3Y7-01 16 129527 129527 C T MPG Missense_Mutation p.S48L 0.31 tolerated_low_confidence(0.14) benign(0) TCGA-EB-A3Y7-01 16 15716921 15716921 G A KIAA0430 Missense_Mutation p.S777L 0.40 tolerated(0.25) benign(0.002) TCGA-EB-A3Y7-01 16 16297395 16297395 C T ABCC6 Silent p.R290R 0.33 TCGA-EB-A3Y7-01 16 17221676 17221676 G A XYLT1 Silent p.F690F 0.22 TCGA-EB-A3Y7-01 16 18602495 18602495 C T ABCC6P1 RNA 0.17 TCGA-EB-A3Y7-01 16 19051715 19051715 C T TMC7 Silent p.I428I 0.33 TCGA-EB-A3Y7-01 16 19278400 19278400 G A SYT17 3'UTR 0.35 TCGA-EB-A3Y7-01 16 2025874 2025874 C T TBL3 Silent p.V351V 0.33 TCGA-EB-A3Y7-01 16 20360409 20360409 G A UMOD Missense_Mutation p.P72S 0.25 tolerated(0.28) benign(0.125) TCGA-EB-A3Y7-01 16 20497914 20497914 C T ACSM2A Silent p.L550L 0.14 TCGA-EB-A3Y7-01 16 20570581 20570581 C T ACSM2B Silent p.V122V 0.33 TCGA-EB-A3Y7-01 16 20638545 20638545 G A ACSM1 Silent p.L465L 0.31 TCGA-EB-A3Y7-01 16 21108820 21108820 A G DNAH3 Silent p.L841L 0.32 TCGA-EB-A3Y7-01 16 21139052 21139052 C T DNAH3 Silent p.V388V 0.25 TCGA-EB-A3Y7-01 16 2124231 2124231 C T TSC2 Missense_Mutation p.L796F 0.19 deleterious(0.02) probably_damaging(0.954) TCGA-EB-A3Y7-01 16 21712223 21712223 C T OTOA Silent p.I285I 0.36 TCGA-EB-A3Y7-01 16 21995692 21995692 C T PDZD9 Missense_Mutation p.E171K 0.23 tolerated(0.36) benign(0.022) TCGA-EB-A3Y7-01 16 23085073 23085073 G A USP31 Missense_Mutation p.P769S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y7-01 16 23208702 23208702 G A SCNN1G Missense_Mutation p.G344E 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 16 26147193 26147193 G A HS3ST4 Missense_Mutation p.R332Q 0.27 tolerated(0.21) probably_damaging(0.987) TCGA-EB-A3Y7-01 16 28123281 28123281 G A XPO6 Missense_Mutation p.P733L 0.27 deleterious(0) probably_damaging(0.916) TCGA-EB-A3Y7-01 16 29847043 29847043 C T MVP Missense_Mutation p.T199I 0.21 deleterious(0.02) benign(0.014) TCGA-EB-A3Y7-01 16 29897020 29897020 G A SEZ6L2 Missense_Mutation p.S420L 0.25 deleterious(0.02) benign(0.278) TCGA-EB-A3Y7-01 16 30001110 30001110 T G TAOK2 3'Flank 0.36 TCGA-EB-A3Y7-01 16 30975506 30975506 C T SETD1A Missense_Mutation p.S244F 0.32 probably_damaging(0.991) TCGA-EB-A3Y7-01 16 3297027 3297027 C T MEFV Missense_Mutation p.E526K 0.26 tolerated(0.08) benign(0.063) TCGA-EB-A3Y7-01 16 3614149 3614149 G A NLRC3 Silent p.I310I 0.33 TCGA-EB-A3Y7-01 16 48162441 48162441 C A ABCC12 Missense_Mutation p.A482S 0.31 tolerated(0.45) benign(0.002) TCGA-EB-A3Y7-01 16 51172857 51172857 G A SALL1 Silent p.F1092F 0.23 TCGA-EB-A3Y7-01 16 55523684 55523684 G A MMP2 Silent p.A376A 0.19 TCGA-EB-A3Y7-01 16 56377913 56377913 C T GNAO1 3'UTR 0.27 TCGA-EB-A3Y7-01 16 56920956 56920956 C T SLC12A3 Missense_Mutation p.S710L 0.14 deleterious(0.02) benign(0.157) TCGA-EB-A3Y7-01 16 56926876 56926876 G A SLC12A3 Missense_Mutation p.A820T 0.31 tolerated(0.48) benign(0.002) TCGA-EB-A3Y7-01 16 61687497 61687497 A C CDH8 3'UTR 0.21 TCGA-EB-A3Y7-01 16 62055221 62055221 C T CDH8 Missense_Mutation p.M29I 0.25 tolerated(0.33) benign(0.003) TCGA-EB-A3Y7-01 16 67203243 67203243 C T HSF4 Missense_Mutation p.P439L 0.35 tolerated(0.07) benign(0.003) TCGA-EB-A3Y7-01 16 67694967 67694967 C T PARD6A Missense_Mutation p.A9V 0.16 tolerated(0.28) benign(0.003) TCGA-EB-A3Y7-01 16 67909919 67909919 C T EDC4 Missense_Mutation p.P52S 0.15 tolerated(0.54) possibly_damaging(0.507) TCGA-EB-A3Y7-01 16 67917797 67917797 C T EDC4 Intron 0.12 TCGA-EB-A3Y7-01 16 68398705 68398705 C T SMPD3 Missense_Mutation p.V502M 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 16 70866813 70866813 C T HYDIN Missense_Mutation p.G4613R 0.19 probably_damaging(0.991) TCGA-EB-A3Y7-01 16 71008548 71008548 C T HYDIN Missense_Mutation p.D1600N 0.18 probably_damaging(0.981) TCGA-EB-A3Y7-01 16 71163590 71163590 C T HYDIN Missense_Mutation p.G394R 0.22 benign(0.147) TCGA-EB-A3Y7-01 16 71209560 71209560 G A HYDIN Missense_Mutation p.P156S 0.24 probably_damaging(0.986) TCGA-EB-A3Y7-01 16 71571180 71571180 C T CHST4 Silent p.I200I 0.28 TCGA-EB-A3Y7-01 16 71961775 71961775 G C IST1 3'UTR 0.28 TCGA-EB-A3Y7-01 16 75148085 75148085 G A LDHD Missense_Mutation p.P226L 0.16 tolerated_low_confidence(0.92) benign(0.002) TCGA-EB-A3Y7-01 16 85109504 85109504 C T KIAA0513 Silent p.F186F 0.22 TCGA-EB-A3Y7-01 16 88066738 88066738 C T BANP Missense_Mutation p.P355S 0.26 tolerated_low_confidence(0.46) benign(0.005) TCGA-EB-A3Y7-01 16 88870212 88870212 C T CDT1 5'UTR 0.23 TCGA-EB-A3Y7-01 16 9934841 9934841 C T GRIN2A Silent p.G483G 0.18 TCGA-EB-A3Y7-01 17 10212736 10212736 C T MYH13 Missense_Mutation p.D1662N 0.38 deleterious(0) benign(0.425) TCGA-EB-A3Y7-01 17 10227434 10227434 G A MYH13 Silent p.L947L 0.25 TCGA-EB-A3Y7-01 17 10352358 10352358 C T MYH4 Silent p.K1396K 0.15 TCGA-EB-A3Y7-01 17 10395837 10395837 C T MYH1 Missense_Mutation p.E1906K 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A3Y7-01 17 10404443 10404443 G A MYH1 Missense_Mutation p.T1241I 0.26 tolerated(0.12) benign(0.011) TCGA-EB-A3Y7-01 17 10424676 10424676 G A MYH2 Missense_Mutation p.A1916V 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 17 11696851 11696851 A G DNAH9 Missense_Mutation p.K2698R 0.24 benign(0.021) TCGA-EB-A3Y7-01 17 12898372 12898372 G A ELAC2 Missense_Mutation p.P606S 0.29 tolerated(0.08) possibly_damaging(0.474) TCGA-EB-A3Y7-01 17 1559958 1559958 A C PRPF8 Missense_Mutation p.M1868R 0.23 deleterious(0) probably_damaging(0.939) TCGA-EB-A3Y7-01 17 15878164 15878164 G A ADORA2B Silent p.V169V 0.18 TCGA-EB-A3Y7-01 17 15878639 15878639 C T ADORA2B Missense_Mutation p.L328F 0.25 tolerated(0.35) benign(0.004) TCGA-EB-A3Y7-01 17 16593933 16593933 G A CCDC144A Silent p.Q73Q 0.22 TCGA-EB-A3Y7-01 17 16612232 16612232 G A CCDC144A Nonsense_Mutation p.W287* 0.33 TCGA-EB-A3Y7-01 17 16638362 16638362 A C CCDC144A Missense_Mutation p.D926A 0.43 deleterious(0) benign(0.441) TCGA-EB-A3Y7-01 17 171119 171119 G A RPH3AL Silent p.I55I 0.29 TCGA-EB-A3Y7-01 17 17699758 17699758 G A RAI1 Missense_Mutation p.G1166S 0.30 tolerated(1) benign(0.001) TCGA-EB-A3Y7-01 17 18041552 18041552 T G MYO15A Missense_Mutation p.F1667V 0.23 unknown(0) TCGA-EB-A3Y7-01 17 18226060 18226060 G A SMCR8 Silent p.L830L 0.32 TCGA-EB-A3Y7-01 17 18542003 18542003 C T TBC1D28 Silent p.K70K 0.27 TCGA-EB-A3Y7-01 17 2598524 2598524 C T CLUH Silent p.K826K 0.27 TCGA-EB-A3Y7-01 17 26919441 26919441 G A SPAG5 Missense_Mutation p.A274V 0.27 tolerated_low_confidence(0.31) benign(0.392) TCGA-EB-A3Y7-01 17 27240019 27240019 A T PHF12 Missense_Mutation p.S524T 0.32 tolerated(0.36) benign(0.001) TCGA-EB-A3Y7-01 17 2866754 2866754 G A RAP1GAP2 Missense_Mutation p.E93K 0.24 deleterious(0.03) benign(0.165) TCGA-EB-A3Y7-01 17 29151610 29151610 C T CRLF3 Silent p.V20V 0.37 TCGA-EB-A3Y7-01 17 29162623 29162623 C T ATAD5 Silent p.F508F 0.30 TCGA-EB-A3Y7-01 17 29272068 29272068 G A ADAP2 Silent p.G218G 0.37 TCGA-EB-A3Y7-01 17 29560217 29560217 C G NF1 Missense_Mutation p.P1232A 0.28 tolerated(0.27) probably_damaging(0.98) TCGA-EB-A3Y7-01 17 29622362 29622362 C T OMG Missense_Mutation p.A330T 0.24 tolerated(0.07) benign(0.001) TCGA-EB-A3Y7-01 17 2996137 2996137 C T OR1D2 Missense_Mutation p.D52N 0.28 deleterious(0.04) benign(0.078) TCGA-EB-A3Y7-01 17 30226711 30226711 A T UTP6 Missense_Mutation p.I44N 0.34 deleterious(0) probably_damaging(0.934) TCGA-EB-A3Y7-01 17 3195514 3195514 C A OR3A1 Missense_Mutation p.M121I 0.21 deleterious(0) possibly_damaging(0.693) TCGA-EB-A3Y7-01 17 33457354 33457354 G A FNDC8 Silent p.Q292Q 0.26 TCGA-EB-A3Y7-01 17 33681076 33681076 G A SLFN11 Missense_Mutation p.P401S 0.31 tolerated(0.6) benign(0.004) TCGA-EB-A3Y7-01 17 33772539 33772539 A G SLFN13 Missense_Mutation p.L54S 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 17 34340328 34340328 C T CCL23 Missense_Mutation p.R108Q 0.29 tolerated(1) benign(0.014) TCGA-EB-A3Y7-01 17 3655091 3655091 C T ITGAE Silent p.A582A 0.28 TCGA-EB-A3Y7-01 17 37262196 37262196 G A PLXDC1 Missense_Mutation p.S241F 0.26 deleterious(0.05) possibly_damaging(0.738) TCGA-EB-A3Y7-01 17 37627839 37627839 C T CDK12 Missense_Mutation p.P585L 0.30 possibly_damaging(0.489) TCGA-EB-A3Y7-01 17 38787882 38787882 G A SMARCE1 Silent p.L260L 0.21 TCGA-EB-A3Y7-01 17 38928102 38928102 C T KRT26 Silent p.Q88Q 0.24 TCGA-EB-A3Y7-01 17 38954573 38954573 C T KRT28 Missense_Mutation p.E202K 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-EB-A3Y7-01 17 39240482 39240482 C T KRTAP4-7 Silent p.S8S 0.10 TCGA-EB-A3Y7-01 17 39261664 39261664 C T KRTAP4-9 Silent p.S8S 0.20 TCGA-EB-A3Y7-01 17 39521165 39521165 C T KRT33B Silent p.V321V 0.35 TCGA-EB-A3Y7-01 17 39553550 39553550 T A KRT31 Missense_Mutation p.N81I 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 17 41930299 41930299 C T CD300LG Silent p.S133S 0.26 TCGA-EB-A3Y7-01 17 41958502 41958502 C T MPP2 Missense_Mutation p.G315E 0.27 tolerated(0.3) possibly_damaging(0.717) TCGA-EB-A3Y7-01 17 42226178 42226178 C T C17orf53 Missense_Mutation p.P336L 0.31 tolerated(0.15) benign(0.013) TCGA-EB-A3Y7-01 17 42327865 42327865 T G SLC4A1 Missense_Mutation p.E899D 0.30 tolerated(0.7) benign(0.001) TCGA-EB-A3Y7-01 17 42340068 42340068 C A SLC4A1 Missense_Mutation p.E14D 0.23 tolerated(0.41) benign(0) TCGA-EB-A3Y7-01 17 43345009 43345009 G A MAP3K14-AS1 RNA 0.35 TCGA-EB-A3Y7-01 17 46257428 46257428 C T SKAP1 Missense_Mutation p.E272K 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-EB-A3Y7-01 17 4722448 4722448 C T PLD2 Missense_Mutation p.P748L 0.30 tolerated(1) benign(0.009) TCGA-EB-A3Y7-01 17 48918403 48918403 C T WFIKKN2 3'UTR 0.39 TCGA-EB-A3Y7-01 17 51900635 51900635 C G KIF2B Missense_Mutation p.P81A 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3Y7-01 17 51900950 51900950 G A KIF2B Missense_Mutation p.E186K 0.36 deleterious(0.04) possibly_damaging(0.783) TCGA-EB-A3Y7-01 17 5338271 5338271 G A C1QBP Silent p.F133F 0.29 TCGA-EB-A3Y7-01 17 56357810 56357810 C T MPO Silent p.G55G 0.22 TCGA-EB-A3Y7-01 17 57134298 57134298 G A TRIM37 Silent p.F379F 0.16 TCGA-EB-A3Y7-01 17 59155891 59155891 G A BCAS3 Splice_Site p.X791_splice 0.21 TCGA-EB-A3Y7-01 17 59947127 59947127 G A INTS2 Missense_Mutation p.P1009S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y7-01 17 60470992 60470992 C T EFCAB3 Silent p.F170F 0.29 TCGA-EB-A3Y7-01 17 60493587 60493587 C T EFCAB3 Missense_Mutation p.S457F 0.31 tolerated(0.12) benign(0.007) TCGA-EB-A3Y7-01 17 61949807 61949807 G A CSH2 Intron 0.30 TCGA-EB-A3Y7-01 17 61972279 61972279 G A CSH1 3'UTR 0.36 TCGA-EB-A3Y7-01 17 62018970 62018970 C T SCN4A Missense_Mutation p.E1558K 0.32 tolerated(0.12) probably_damaging(0.967) TCGA-EB-A3Y7-01 17 62968723 62968723 C A AMZ2P1 RNA 0.30 TCGA-EB-A3Y7-01 17 6337259 6337259 C T AIPL1 Missense_Mutation p.E86K 0.14 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 17 64881147 64881147 G A CACNG5 Silent p.A206A 0.33 TCGA-EB-A3Y7-01 17 66986043 66986043 C T ABCA9 Missense_Mutation p.R1289Q 0.25 tolerated(0.06) benign(0.113) TCGA-EB-A3Y7-01 17 6719276 6719276 T G TEKT1 Missense_Mutation p.K121T 0.26 deleterious(0.01) possibly_damaging(0.772) TCGA-EB-A3Y7-01 17 67221586 67221586 G A ABCA10 5'UTR 0.24 TCGA-EB-A3Y7-01 17 72357938 72357938 G A BTBD17 Silent p.S7S 0.25 TCGA-EB-A3Y7-01 17 7245294 7245294 G A ACAP1 Missense_Mutation p.E47K 0.21 deleterious(0) benign(0.297) TCGA-EB-A3Y7-01 17 72470779 72470779 A T CD300A Missense_Mutation p.H163L 0.21 tolerated(0.18) benign(0.021) TCGA-EB-A3Y7-01 17 72537873 72537873 G A CD300C Missense_Mutation p.S177F 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A3Y7-01 17 72916481 72916481 G A USH1G Silent p.C150C 0.31 TCGA-EB-A3Y7-01 17 73237751 73237751 C T GGA3 Silent p.K258K 0.30 TCGA-EB-A3Y7-01 17 73726525 73726525 C T ITGB4 Silent p.L314L 0.32 TCGA-EB-A3Y7-01 17 76094543 76094543 C T TNRC6C Missense_Mutation p.P1512S 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 17 76396798 76396798 C A PGS1 Missense_Mutation p.R248S 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 17 76566355 76566355 C T DNAH17 Missense_Mutation p.E340K 0.38 possibly_damaging(0.591) TCGA-EB-A3Y7-01 17 7689966 7689966 G A DNAH2 Missense_Mutation p.D2143N 0.30 probably_damaging(1) TCGA-EB-A3Y7-01 17 8051978 8051978 G A PER1 Silent p.I344I 0.29 TCGA-EB-A3Y7-01 17 80617461 80617461 C T RAB40B Missense_Mutation p.D113N 0.19 tolerated(0.05) benign(0.05) TCGA-EB-A3Y7-01 17 80863831 80863831 C T TBCD Silent p.S608S 0.29 TCGA-EB-A3Y7-01 17 8159961 8159961 C T PFAS Missense_Mutation p.P314L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 17 9674919 9674919 C A DHRS7C Missense_Mutation p.M275I 0.21 tolerated(0.16) benign(0.005) TCGA-EB-A3Y7-01 17 9801405 9801405 G A RCVRN 3'UTR 0.25 TCGA-EB-A3Y7-01 17 9804462 9804462 G A RCVRN Intron 0.25 TCGA-EB-A3Y7-01 18 22642702 22642702 G A ZNF521 Missense_Mutation p.H1304Y 0.19 deleterious(0) benign(0.001) TCGA-EB-A3Y7-01 18 23738120 23738120 G A PSMA8 Missense_Mutation p.G136D 0.35 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y7-01 18 28737423 28737423 C T DSC1 Missense_Mutation p.E88K 0.27 tolerated(0.08) benign(0.015) TCGA-EB-A3Y7-01 18 29118796 29118796 T C DSG2 Silent p.F578F 0.27 TCGA-EB-A3Y7-01 18 30254700 30254700 C T KLHL14 Missense_Mutation p.E603K 0.29 tolerated(0.27) probably_damaging(0.974) TCGA-EB-A3Y7-01 18 30260132 30260132 C T KLHL14 Missense_Mutation p.G530S 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-EB-A3Y7-01 18 44015333 44015333 C A RNF165 Silent p.P153P 0.17 TCGA-EB-A3Y7-01 18 47800616 47800616 G A MBD1 Silent p.F362F 0.24 TCGA-EB-A3Y7-01 18 48248451 48248451 C T MAPK4 Missense_Mutation p.P279S 0.23 deleterious(0.02) benign(0.429) TCGA-EB-A3Y7-01 18 49867045 49867045 G A DCC 5'UTR 0.20 TCGA-EB-A3Y7-01 18 54815147 54815147 G A BOD1L2 3'UTR 0.30 TCGA-EB-A3Y7-01 18 55024537 55024537 C T ST8SIA3 Silent p.F232F 0.26 TCGA-EB-A3Y7-01 18 56203412 56203412 G A ALPK2 Missense_Mutation p.P1336L 0.34 tolerated(0.29) benign(0.009) TCGA-EB-A3Y7-01 18 56963954 56963954 C T CPLX4 Silent p.A153A 0.29 TCGA-EB-A3Y7-01 18 61264272 61264272 A C SERPINB13 Missense_Mutation p.H284P 0.20 deleterious(0.02) possibly_damaging(0.88) TCGA-EB-A3Y7-01 18 61383349 61383349 G A SERPINB11 Silent p.R146R 0.16 TCGA-EB-A3Y7-01 18 61468147 61468147 T A SERPINB7 Missense_Mutation p.N215K 0.30 tolerated(1) benign(0.388) TCGA-EB-A3Y7-01 18 61471748 61471748 G A SERPINB7 Missense_Mutation p.G341E 0.34 tolerated(0.1) benign(0.046) TCGA-EB-A3Y7-01 18 64202232 64202232 T C CDH19 Missense_Mutation p.T443A 0.27 tolerated(0.14) benign(0.038) TCGA-EB-A3Y7-01 18 67992721 67992721 C T SOCS6 Silent p.L273L 0.29 TCGA-EB-A3Y7-01 18 6837298 6837298 G A ARHGAP28 5'UTR 0.29 TCGA-EB-A3Y7-01 18 76936816 76936816 C T ATP9B Missense_Mutation p.S261L 0.30 deleterious(0.01) benign(0.223) TCGA-EB-A3Y7-01 18 9887679 9887679 G A TXNDC2 Silent p.E401E 0.29 TCGA-EB-A3Y7-01 19 1013248 1013248 G A TMEM259 Missense_Mutation p.P200L 0.21 tolerated(0.16) benign(0.038) TCGA-EB-A3Y7-01 19 10250809 10250809 G A DNMT1 Missense_Mutation p.P1240L 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A3Y7-01 19 11486227 11486227 T C SWSAP1 Silent p.L75L 0.25 TCGA-EB-A3Y7-01 19 11568953 11568953 C T ELAVL3 Silent p.Q212Q 0.17 TCGA-EB-A3Y7-01 19 12187235 12187235 C T ZNF844 Missense_Mutation p.P434S 0.28 tolerated(1) benign(0.011) TCGA-EB-A3Y7-01 19 12463915 12463915 A C ZNF442 Missense_Mutation p.F31C 0.23 deleterious(0) probably_damaging(0.954) TCGA-EB-A3Y7-01 19 13418992 13418992 G A CACNA1A Missense_Mutation p.L619F 0.24 probably_damaging(0.986) TCGA-EB-A3Y7-01 19 14562718 14562718 G A PKN1 Missense_Mutation p.G356R 0.14 tolerated(0.6) benign(0.092) TCGA-EB-A3Y7-01 19 15640648 15640648 C T CYP4F22 Silent p.P117P 0.19 TCGA-EB-A3Y7-01 19 15752390 15752390 G A CYP4F3 Silent p.P55P 0.25 TCGA-EB-A3Y7-01 19 15770075 15770075 C T CYP4F3 Silent p.V481V 0.20 TCGA-EB-A3Y7-01 19 15770144 15770144 G A CYP4F3 Silent p.L504L 0.28 TCGA-EB-A3Y7-01 19 15918356 15918356 G A OR10H1 Silent p.F164F 0.25 TCGA-EB-A3Y7-01 19 16033225 16033225 C T CYP4F11 Missense_Mutation p.E312K 0.24 tolerated(0.27) benign(0.014) TCGA-EB-A3Y7-01 19 16790836 16790836 C T TMEM38A Silent p.L56L 0.21 TCGA-EB-A3Y7-01 19 16875845 16875845 G A NWD1 Missense_Mutation p.G751D 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-EB-A3Y7-01 19 16902315 16902315 G A NWD1 Missense_Mutation p.G1032E 0.22 deleterious(0.04) probably_damaging(0.945) TCGA-EB-A3Y7-01 19 17743997 17743997 G A UNC13A Missense_Mutation p.P1074L 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 19 19337661 19337661 G A NCAN Missense_Mutation p.R480K 0.36 tolerated(0.1) benign(0.011) TCGA-EB-A3Y7-01 19 19344692 19344692 C T NCAN Silent p.F1038F 0.20 TCGA-EB-A3Y7-01 19 20307976 20307976 A G ZNF486 Missense_Mutation p.I153V 0.22 tolerated(0.21) benign(0.009) TCGA-EB-A3Y7-01 19 22156518 22156518 G A ZNF208 Missense_Mutation p.L440F 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A3Y7-01 19 22363809 22363809 G A ZNF676 Missense_Mutation p.S237F 0.18 tolerated(0.35) benign(0) TCGA-EB-A3Y7-01 19 22941060 22941060 T C ZNF99 Missense_Mutation p.T551A 0.25 tolerated(0.81) benign(0.013) TCGA-EB-A3Y7-01 19 2877669 2877669 A T ZNF556 Missense_Mutation p.K238I 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-EB-A3Y7-01 19 30934761 30934761 G A ZNF536 Missense_Mutation p.G98R 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 19 3151813 3151813 C T GNA15 Silent p.S198S 0.21 TCGA-EB-A3Y7-01 19 35829216 35829216 A T CD22 Silent p.T377T 0.26 TCGA-EB-A3Y7-01 19 35829217 35829217 G A CD22 Missense_Mutation p.E378K 0.26 tolerated(0.31) benign(0.361) TCGA-EB-A3Y7-01 19 36243421 36243421 C T LIN37 Intron 0.28 TCGA-EB-A3Y7-01 19 36517574 36517574 C T CLIP3 Nonsense_Mutation p.W159* 0.15 TCGA-EB-A3Y7-01 19 3739037 3739037 C T TJP3 Silent p.P521P 0.27 TCGA-EB-A3Y7-01 19 37676809 37676809 G A ZNF585B Missense_Mutation p.H544Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 19 3785067 3785067 G A MATK Intron 0.30 TCGA-EB-A3Y7-01 19 38229649 38229649 G A ZNF573 Missense_Mutation p.P581L 0.28 deleterious(0.02) probably_damaging(1) TCGA-EB-A3Y7-01 19 3920780 3920780 G A ATCAY Missense_Mutation p.E364K 0.19 deleterious_low_confidence(0.02) benign(0.02) TCGA-EB-A3Y7-01 19 40521038 40521038 C T ZNF546 Nonsense_Mutation p.Q621* 0.35 TCGA-EB-A3Y7-01 19 42858027 42858027 C T MEGF8 Missense_Mutation p.P1221S 0.25 tolerated(0.92) benign(0.001) TCGA-EB-A3Y7-01 19 42858028 42858028 C T MEGF8 Missense_Mutation p.P1221L 0.25 tolerated(0.73) benign(0.018) TCGA-EB-A3Y7-01 19 43026238 43026238 T A CEACAM1 Missense_Mutation p.N181Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 19 43258394 43258394 C T PSG8 3'UTR 0.23 TCGA-EB-A3Y7-01 19 43371121 43371121 G A PSG1 3'Flank 0.17 TCGA-EB-A3Y7-01 19 43376039 43376039 C T PSG1 Missense_Mutation p.E197K 0.28 tolerated(0.89) benign(0.003) TCGA-EB-A3Y7-01 19 43411107 43411107 C T PSG6 Missense_Mutation p.E403K 0.31 tolerated(0.19) possibly_damaging(0.466) TCGA-EB-A3Y7-01 19 43411855 43411855 C T PSG6 Silent p.K286K 0.26 TCGA-EB-A3Y7-01 19 43433742 43433742 G A PSG7 Silent p.L187L 0.24 TCGA-EB-A3Y7-01 19 43575911 43575911 G A PSG2 Missense_Mutation p.S302F 0.27 tolerated(0.75) benign(0.002) TCGA-EB-A3Y7-01 19 44679905 44679905 T G ZNF226 Missense_Mutation p.F164V 0.29 deleterious(0.03) benign(0.023) TCGA-EB-A3Y7-01 19 45303659 45303659 C T CBLC Missense_Mutation p.P462S 0.25 tolerated_low_confidence(0.15) benign(0.18) TCGA-EB-A3Y7-01 19 45575422 45575422 G A ZNF296 Missense_Mutation p.P289S 0.25 deleterious(0.02) possibly_damaging(0.834) TCGA-EB-A3Y7-01 19 45575423 45575423 G A ZNF296 Silent p.S288S 0.27 TCGA-EB-A3Y7-01 19 47761815 47761815 G A CCDC9 Splice_Site p.X2_splice 0.29 TCGA-EB-A3Y7-01 19 47844930 47844930 C T C5AR2 Silent p.L292L 0.32 TCGA-EB-A3Y7-01 19 48374794 48374794 G A SULT2A1 Missense_Mutation p.T259I 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-EB-A3Y7-01 19 48387023 48387023 C T SULT2A1 Silent p.E52E 0.33 TCGA-EB-A3Y7-01 19 49143074 49143074 C T CA11 Missense_Mutation p.G180S 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 19 49967153 49967153 C T ALDH16A1 Missense_Mutation p.P381S 0.23 deleterious(0.03) benign(0.364) TCGA-EB-A3Y7-01 19 50102639 50102639 C T PRR12 Silent p.I1263I 0.38 TCGA-EB-A3Y7-01 19 50169132 50169132 C T BCL2L12 Missense_Mutation p.R18W 0.31 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A3Y7-01 19 50208005 50208005 C T CPT1C Silent p.S244S 0.19 TCGA-EB-A3Y7-01 19 50245272 50245272 C T TSKS Missense_Mutation p.G456E 0.38 deleterious(0.01) possibly_damaging(0.628) TCGA-EB-A3Y7-01 19 50247612 50247612 C T TSKS Missense_Mutation p.G413R 0.16 tolerated(0.05) possibly_damaging(0.89) TCGA-EB-A3Y7-01 19 5041226 5041226 C T KDM4B Silent p.I132I 0.25 TCGA-EB-A3Y7-01 19 50823955 50823955 C T KCNC3 Missense_Mutation p.D689N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-EB-A3Y7-01 19 51217541 51217541 A G SHANK1 Silent p.L180L 0.21 TCGA-EB-A3Y7-01 19 51728627 51728627 G A CD33 Missense_Mutation p.G64E 0.26 tolerated(0.14) possibly_damaging(0.855) TCGA-EB-A3Y7-01 19 51914509 51914509 G A SIGLEC10 Silent p.F646F 0.22 TCGA-EB-A3Y7-01 19 52115664 52115664 C T SIGLEC5 Silent p.K492K 0.26 TCGA-EB-A3Y7-01 19 52568397 52568397 G A ZNF841 Missense_Mutation p.P913L 0.25 tolerated_low_confidence(0.36) benign(0.301) TCGA-EB-A3Y7-01 19 52568398 52568398 G A ZNF841 Missense_Mutation p.P913S 0.25 tolerated_low_confidence(0.12) benign(0.163) TCGA-EB-A3Y7-01 19 53770177 53770177 G A VN1R4 Missense_Mutation p.L248F 0.21 tolerated(0.06) benign(0.315) TCGA-EB-A3Y7-01 19 54137810 54137810 G A DPRX Silent p.R18R 0.25 TCGA-EB-A3Y7-01 19 54625898 54625898 G A PRPF31 Silent p.R115R 0.27 TCGA-EB-A3Y7-01 19 54823298 54823298 C T LILRA5 Missense_Mutation p.G82E 0.27 tolerated(0.06) probably_damaging(0.961) TCGA-EB-A3Y7-01 19 54844967 54844967 A T LILRA4 Missense_Mutation p.F459Y 0.20 deleterious(0.01) benign(0.087) TCGA-EB-A3Y7-01 19 55019154 55019154 C T LAIR2 Missense_Mutation p.S40F 0.21 deleterious(0) benign(0.409) TCGA-EB-A3Y7-01 19 55046940 55046940 C T KIR3DX1 Missense_Mutation p.S162F 0.30 tolerated(0.73) benign(0.074) TCGA-EB-A3Y7-01 19 55087331 55087331 G A LILRA2 Missense_Mutation p.G337E 0.25 deleterious(0.02) probably_damaging(1) TCGA-EB-A3Y7-01 19 55247328 55247328 G A KIR3DL3 Missense_Mutation p.V366M 0.50 tolerated(0.14) probably_damaging(0.95) TCGA-EB-A3Y7-01 19 55301662 55301662 C T CTB-61M7.1 RNA 0.22 TCGA-EB-A3Y7-01 19 55324687 55324687 A G KIR2DL4 Intron 0.20 TCGA-EB-A3Y7-01 19 55325158 55325158 G A KIR2DL4 Missense_Mutation p.M240I 0.25 tolerated(0.1) benign(0.118) TCGA-EB-A3Y7-01 19 55663191 55663191 G A TNNI3 3'UTR 0.23 TCGA-EB-A3Y7-01 19 55697833 55697833 G A PTPRH Missense_Mutation p.P881L 0.23 probably_damaging(0.987) TCGA-EB-A3Y7-01 19 55812995 55812995 T A BRSK1 Missense_Mutation p.M265K 0.22 deleterious(0) benign(0.083) TCGA-EB-A3Y7-01 19 56363446 56363446 G A NLRP4 5'UTR 0.27 TCGA-EB-A3Y7-01 19 56373416 56373416 C T NLRP4 Nonsense_Mutation p.Q693* 0.27 TCGA-EB-A3Y7-01 19 56421954 56421954 G A NLRP13 Missense_Mutation p.P753S 0.29 tolerated(0.07) possibly_damaging(0.685) TCGA-EB-A3Y7-01 19 56423421 56423421 A C NLRP13 Missense_Mutation p.F588V 0.27 deleterious(0.04) benign(0.292) TCGA-EB-A3Y7-01 19 56424552 56424552 C T NLRP13 Missense_Mutation p.E211K 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A3Y7-01 19 56499271 56499271 A G NLRP8 Missense_Mutation p.N1047D 0.31 deleterious_low_confidence(0) benign(0.292) TCGA-EB-A3Y7-01 19 57328211 57328211 C T PEG3 Silent p.V533V 0.21 TCGA-EB-A3Y7-01 19 57640197 57640197 C T USP29 Nonsense_Mutation p.Q52* 0.20 TCGA-EB-A3Y7-01 19 57640595 57640595 G A USP29 Silent p.L184L 0.21 TCGA-EB-A3Y7-01 19 5787325 5787325 G A DUS3L Silent p.I420I 0.25 TCGA-EB-A3Y7-01 19 58018704 58018704 C T ZNF773 Missense_Mutation p.P414L 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 19 58904729 58904729 C T RPS5 Missense_Mutation p.P108S 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A3Y7-01 19 6156536 6156536 G A ACSBG2 Missense_Mutation p.D161N 0.25 tolerated(0.34) benign(0.366) TCGA-EB-A3Y7-01 19 8668687 8668687 C T ADAMTS10 Missense_Mutation p.E173K 0.28 tolerated(0.11) benign(0.133) TCGA-EB-A3Y7-01 19 8974062 8974062 C T MUC16 Silent p.Q14203Q 0.25 TCGA-EB-A3Y7-01 19 9010676 9010676 C T MUC16 Silent p.G12995G 0.21 TCGA-EB-A3Y7-01 19 9024172 9024172 C T MUC16 Missense_Mutation p.R12367K 0.33 possibly_damaging(0.491) TCGA-EB-A3Y7-01 19 9026299 9026299 C T MUC16 Silent p.L12229L 0.27 TCGA-EB-A3Y7-01 19 9057930 9057930 G A MUC16 Missense_Mutation p.T9839I 0.35 unknown(0) TCGA-EB-A3Y7-01 19 9062579 9062579 G A MUC16 Silent p.F8289F 0.30 TCGA-EB-A3Y7-01 19 9063832 9063832 G A MUC16 Missense_Mutation p.P7872S 0.23 unknown(0) TCGA-EB-A3Y7-01 19 9068846 9068846 C T MUC16 Missense_Mutation p.M6200I 0.28 unknown(0) TCGA-EB-A3Y7-01 19 9072100 9072100 C T MUC16 Missense_Mutation p.E5116K 0.31 unknown(0) TCGA-EB-A3Y7-01 19 9073396 9073396 C T MUC16 Missense_Mutation p.G4684R 0.27 unknown(0) TCGA-EB-A3Y7-01 19 9075372 9075372 T A MUC16 Missense_Mutation p.D4025V 0.28 unknown(0) TCGA-EB-A3Y7-01 19 9077049 9077049 G A MUC16 Missense_Mutation p.S3466F 0.24 unknown(0) TCGA-EB-A3Y7-01 19 9086706 9086706 G A MUC16 Silent p.V1703V 0.27 TCGA-EB-A3Y7-01 19 9087251 9087251 C T MUC16 Missense_Mutation p.G1522R 0.30 unknown(0) TCGA-EB-A3Y7-01 1 101705685 101705685 C T S1PR1 Missense_Mutation p.S382F 0.39 deleterious(0) possibly_damaging(0.868) TCGA-EB-A3Y7-01 1 102302488 102302488 T A OLFM3 Missense_Mutation p.N55Y 0.37 deleterious(0.01) possibly_damaging(0.837) TCGA-EB-A3Y7-01 1 103348803 103348803 G A COL11A1 Silent p.F1641F 0.30 TCGA-EB-A3Y7-01 1 109193724 109193724 G A HENMT1 Missense_Mutation p.P169L 0.28 deleterious(0.01) possibly_damaging(0.542) TCGA-EB-A3Y7-01 1 109812564 109812564 A G CELSR2 Missense_Mutation p.I2373V 0.27 tolerated(1) benign(0.02) TCGA-EB-A3Y7-01 1 110884746 110884746 C T RBM15 Missense_Mutation p.P907S 0.26 deleterious(0.01) possibly_damaging(0.488) TCGA-EB-A3Y7-01 1 111147171 111147171 G A KCNA2 Silent p.F78F 0.30 TCGA-EB-A3Y7-01 1 11181421 11181421 G A MTOR Missense_Mutation p.A2272V 0.33 deleterious(0) probably_damaging(0.977) TCGA-EB-A3Y7-01 1 111958967 111958967 C T OVGP1 Silent p.L378L 0.35 TCGA-EB-A3Y7-01 1 112525310 112525310 C T KCND3 Silent p.R13R 0.27 TCGA-EB-A3Y7-01 1 114450746 114450746 C T DCLRE1B Silent p.S157S 0.24 TCGA-EB-A3Y7-01 1 115226923 115226923 C T AMPD1 Silent p.E181E 0.32 TCGA-EB-A3Y7-01 1 116280940 116280940 A G CASQ2 Missense_Mutation p.V146A 0.26 deleterious(0) probably_damaging(0.987) TCGA-EB-A3Y7-01 1 117944941 117944941 C T MAN1A2 Nonsense_Mutation p.Q146* 0.25 TCGA-EB-A3Y7-01 1 118486133 118486133 C T WDR3 Silent p.V404V 0.33 TCGA-EB-A3Y7-01 1 12089854 12089854 T C MIIP Missense_Mutation p.F250L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 1 12359324 12359324 C T VPS13D Silent p.L2033L 0.42 TCGA-EB-A3Y7-01 1 12628239 12628239 T C DHRS3 3'UTR 0.50 TCGA-EB-A3Y7-01 1 12711244 12711244 G A AADACL4 Missense_Mutation p.D91N 0.43 tolerated(0.38) benign(0.031) TCGA-EB-A3Y7-01 1 12835800 12835800 G A PRAMEF12 Silent p.G134G 0.42 TCGA-EB-A3Y7-01 1 12888461 12888461 G A PRAMEF11 Silent p.F21F 0.21 TCGA-EB-A3Y7-01 1 13001096 13001096 C T PRAMEF6 Missense_Mutation p.R196K 0.18 tolerated(0.97) benign(0.013) TCGA-EB-A3Y7-01 1 13372 13372 G T DDX11L1 RNA 0.31 TCGA-EB-A3Y7-01 1 13716843 13716843 G A PRAMEF17 Silent p.G110G 0.29 TCGA-EB-A3Y7-01 1 1389812 1389812 G A ATAD3C Missense_Mutation p.G104R 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-EB-A3Y7-01 1 144917576 144917576 G A PDE4DIP Missense_Mutation p.R510C 0.13 tolerated(0.09) benign(0.008) TCGA-EB-A3Y7-01 1 150526324 150526324 C T ADAMTSL4 Missense_Mutation p.S286F 0.34 tolerated(0.53) possibly_damaging(0.499) TCGA-EB-A3Y7-01 1 150960409 150960409 G A ANXA9 Missense_Mutation p.R225Q 0.22 tolerated(0.06) probably_damaging(1) TCGA-EB-A3Y7-01 1 151751698 151751698 G A TDRKH Missense_Mutation p.R148C 0.20 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y7-01 1 152058417 152058417 C T TCHHL1 Missense_Mutation p.G581R 0.19 tolerated(0.98) benign(0.039) TCGA-EB-A3Y7-01 1 152128553 152128553 G A RPTN Missense_Mutation p.S341F 0.42 deleterious(0.02) benign(0.134) TCGA-EB-A3Y7-01 1 152325478 152325478 C T FLG2 Missense_Mutation p.R1595Q 0.39 benign(0.07) TCGA-EB-A3Y7-01 1 152784973 152784973 C T LCE1B Silent p.I17I 0.28 TCGA-EB-A3Y7-01 1 152882760 152882760 C T IVL Silent p.L163L 0.59 TCGA-EB-A3Y7-01 1 153042996 153042996 G A SPRR2B 3'UTR 0.16 TCGA-EB-A3Y7-01 1 153177333 153177333 A T LELP1 Missense_Mutation p.E50D 0.39 tolerated_low_confidence(0.13) possibly_damaging(0.801) TCGA-EB-A3Y7-01 1 154030689 154030689 C T NUP210L Missense_Mutation p.E995K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 1 155058918 155058918 C T EFNA3 Missense_Mutation p.P206S 0.19 deleterious(0) probably_damaging(0.962) TCGA-EB-A3Y7-01 1 155058919 155058919 C T EFNA3 Missense_Mutation p.P206L 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-EB-A3Y7-01 1 155150499 155150499 G A TRIM46 Missense_Mutation p.E311K 0.40 tolerated(0.13) benign(0.256) TCGA-EB-A3Y7-01 1 156278944 156278944 G A CCT3 3'UTR 0.48 TCGA-EB-A3Y7-01 1 156834588 156834588 G C NTRK1 Missense_Mutation p.R119P 0.46 deleterious(0.03) benign(0.421) TCGA-EB-A3Y7-01 1 157665120 157665120 T G FCRL3 Silent p.T470T 0.20 TCGA-EB-A3Y7-01 1 158261893 158261893 G A CD1C Silent p.V116V 0.17 TCGA-EB-A3Y7-01 1 158436256 158436256 G A OR10K1 Missense_Mutation p.R302Q 0.40 tolerated(0.16) benign(0.004) TCGA-EB-A3Y7-01 1 158747357 158747357 G A OR6N2 Silent p.V23V 0.42 TCGA-EB-A3Y7-01 1 159275888 159275888 G A FCER1A Missense_Mutation p.D148N 0.18 tolerated(0.92) benign(0.025) TCGA-EB-A3Y7-01 1 159832409 159832409 C T VSIG8 5'UTR 0.27 TCGA-EB-A3Y7-01 1 160465898 160465898 G A SLAMF6 Missense_Mutation p.S112F 0.18 deleterious(0) possibly_damaging(0.629) TCGA-EB-A3Y7-01 1 160784241 160784241 G A LY9 Silent p.G254G 0.17 TCGA-EB-A3Y7-01 1 160786621 160786621 C T LY9 Missense_Mutation p.S437F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 1 167674035 167674035 G C RCSD1 3'UTR 0.18 TCGA-EB-A3Y7-01 1 167787321 167787321 C T ADCY10 Missense_Mutation p.E1491K 0.55 tolerated(0.48) benign(0.034) TCGA-EB-A3Y7-01 1 168215946 168215946 C T SFT2D2 3'UTR 0.26 TCGA-EB-A3Y7-01 1 169505758 169505758 C T F5 Missense_Mutation p.D1653N 0.24 tolerated(0.13) possibly_damaging(0.891) TCGA-EB-A3Y7-01 1 170967493 170967493 C T MROH9 Intron 0.43 TCGA-EB-A3Y7-01 1 171247945 171247945 C T FMO1 Missense_Mutation p.L188F 0.47 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 1 171605505 171605505 C T MYOC Missense_Mutation p.E359K 0.48 deleterious(0.01) possibly_damaging(0.9) TCGA-EB-A3Y7-01 1 172417629 172417629 G A C1orf105 Missense_Mutation p.M52I 0.45 deleterious(0.02) benign(0.043) TCGA-EB-A3Y7-01 1 173878855 173878855 C T SERPINC1 Missense_Mutation p.E330K 0.19 tolerated(0.69) benign(0.043) TCGA-EB-A3Y7-01 1 173933267 173933267 G A RC3H1 Missense_Mutation p.P559S 0.15 tolerated(0.3) benign(0.001) TCGA-EB-A3Y7-01 1 176563932 176563932 C T PAPPA2 Missense_Mutation p.P398S 0.20 tolerated(0.11) benign(0.338) TCGA-EB-A3Y7-01 1 176852061 176852061 A C ASTN1 Missense_Mutation p.V1099G 0.15 tolerated(0.14) possibly_damaging(0.552) TCGA-EB-A3Y7-01 1 176915250 176915250 G A ASTN1 Silent p.I687I 0.17 TCGA-EB-A3Y7-01 1 177249665 177249665 C T BRINP2 Silent p.S451S 0.42 TCGA-EB-A3Y7-01 1 177937035 177937035 G A SEC16B Missense_Mutation p.R28W 0.44 tolerated(0.12) benign(0) TCGA-EB-A3Y7-01 1 182550423 182550423 G A RNASEL Silent p.I614I 0.46 TCGA-EB-A3Y7-01 1 184764565 184764565 G A FAM129A Missense_Mutation p.P778L 0.17 tolerated_low_confidence(0.23) benign(0.004) TCGA-EB-A3Y7-01 1 186037070 186037070 C T HMCN1 Missense_Mutation p.P2604S 0.18 probably_damaging(0.999) TCGA-EB-A3Y7-01 1 186280283 186280283 G A PRG4 Missense_Mutation p.G1206E 0.37 unknown(0) TCGA-EB-A3Y7-01 1 190067400 190067400 C T BRINP3 Silent p.L683L 0.14 TCGA-EB-A3Y7-01 1 196642116 196642116 G A CFH Missense_Mutation p.E23K 0.25 tolerated(0.23) benign(0.043) TCGA-EB-A3Y7-01 1 196695621 196695621 C T CFH Missense_Mutation p.P632L 0.25 tolerated(0.07) benign(0.243) TCGA-EB-A3Y7-01 1 196696058 196696058 C T CFH Missense_Mutation p.P742S 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 1 196920029 196920029 G A CFHR2 Missense_Mutation p.G101R 0.19 deleterious(0) probably_damaging(0.927) TCGA-EB-A3Y7-01 1 197876373 197876373 T C C1orf53 3'UTR 0.47 TCGA-EB-A3Y7-01 1 200017845 200017845 G A NR5A2 Missense_Mutation p.E337K 0.21 deleterious(0.04) benign(0.006) TCGA-EB-A3Y7-01 1 200587497 200587497 G A KIF14 Missense_Mutation p.L119F 0.20 deleterious(0.04) possibly_damaging(0.801) TCGA-EB-A3Y7-01 1 200974696 200974696 G A KIF21B Missense_Mutation p.R192C 0.46 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 1 20097817 20097817 G A TMCO4 Missense_Mutation p.P113L 0.30 tolerated(0.11) benign(0.187) TCGA-EB-A3Y7-01 1 202571546 202571546 T C SYT2 Missense_Mutation p.K198R 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A3Y7-01 1 203316872 203316872 C T FMOD Missense_Mutation p.R176Q 0.42 tolerated(0.09) benign(0.256) TCGA-EB-A3Y7-01 1 205389621 205389621 T A LEMD1 Missense_Mutation p.Q15L 0.23 deleterious(0.01) benign(0.003) TCGA-EB-A3Y7-01 1 206972262 206972262 C T IL19 Missense_Mutation p.P8L 0.40 deleterious_low_confidence(0.01) benign(0.008) TCGA-EB-A3Y7-01 1 207243705 207243705 C T PFKFB2 Silent p.H391H 0.27 TCGA-EB-A3Y7-01 1 207867813 207867813 G A CR1L Silent p.G193G 0.42 TCGA-EB-A3Y7-01 1 208212226 208212226 G A PLXNA2 Missense_Mutation p.A1535V 0.44 deleterious(0.01) benign(0.001) TCGA-EB-A3Y7-01 1 209799290 209799290 G A LAMB3 Missense_Mutation p.T560I 0.55 deleterious(0) possibly_damaging(0.789) TCGA-EB-A3Y7-01 1 209956150 209956150 A G C1orf74 3'UTR 0.42 TCGA-EB-A3Y7-01 1 21014031 21014031 G A KIF17 Silent p.L596L 0.40 TCGA-EB-A3Y7-01 1 210857043 210857043 C T KCNH1 Nonsense_Mutation p.W850* 0.48 TCGA-EB-A3Y7-01 1 213009289 213009289 G A C1orf227 Missense_Mutation p.P68L 0.51 deleterious(0) possibly_damaging(0.851) TCGA-EB-A3Y7-01 1 214178532 214178532 C A PROX1 Missense_Mutation p.H584N 0.13 deleterious(0) possibly_damaging(0.846) TCGA-EB-A3Y7-01 1 214178567 214178567 C T PROX1 Silent p.T595T 0.12 TCGA-EB-A3Y7-01 1 215847545 215847545 G A USH2A Missense_Mutation p.R4570C 0.14 probably_damaging(0.927) TCGA-EB-A3Y7-01 1 215990485 215990485 C T USH2A Missense_Mutation p.G3142R 0.36 possibly_damaging(0.452) TCGA-EB-A3Y7-01 1 216062252 216062252 C T USH2A Missense_Mutation p.G2580E 0.52 probably_damaging(0.942) TCGA-EB-A3Y7-01 1 216173835 216173835 G A USH2A Missense_Mutation p.S2132F 0.44 possibly_damaging(0.853) TCGA-EB-A3Y7-01 1 216498857 216498857 G A USH2A Silent p.V311V 0.25 TCGA-EB-A3Y7-01 1 216500975 216500975 C T USH2A Missense_Mutation p.R269K 0.20 benign(0.33) TCGA-EB-A3Y7-01 1 222743949 222743949 C T TAF1A Silent p.K221K 0.50 TCGA-EB-A3Y7-01 1 223402569 223402569 G A SUSD4 Missense_Mutation p.P296S 0.17 tolerated(0.2) probably_damaging(0.974) TCGA-EB-A3Y7-01 1 224415312 224415312 C T NVL 3'UTR 0.45 TCGA-EB-A3Y7-01 1 224415313 224415313 C T NVL 3'UTR 0.45 TCGA-EB-A3Y7-01 1 227921804 227921804 G A SNAP47 5'Flank 0.24 TCGA-EB-A3Y7-01 1 228433356 228433356 G A OBSCN Missense_Mutation p.G1334S 0.15 possibly_damaging(0.506) TCGA-EB-A3Y7-01 1 233105748 233105748 C T NTPCR Missense_Mutation p.R130C 0.14 deleterious(0) benign(0.146) TCGA-EB-A3Y7-01 1 241728354 241728354 A G KMO Missense_Mutation p.N228S 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 1 246498703 246498703 G A SMYD3 Missense_Mutation p.S101F 0.17 tolerated(0.08) probably_damaging(0.995) TCGA-EB-A3Y7-01 1 247588527 247588527 G A NLRP3 Silent p.K594K 0.37 TCGA-EB-A3Y7-01 1 247902560 247902560 C T OR14K1 Missense_Mutation p.S215F 0.46 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 1 247902850 247902850 A T OR14K1 Missense_Mutation p.M312L 0.33 tolerated(0.67) benign(0) TCGA-EB-A3Y7-01 1 247921197 247921197 G A OR1C1 Missense_Mutation p.S171F 0.53 deleterious(0.04) benign(0.007) TCGA-EB-A3Y7-01 1 247921392 247921392 G A OR1C1 Missense_Mutation p.S106F 0.53 tolerated(0.76) benign(0.198) TCGA-EB-A3Y7-01 1 248437021 248437021 G A OR2T33 Silent p.I32I 0.18 TCGA-EB-A3Y7-01 1 248616305 248616305 C T OR2T2 Silent p.I69I 0.24 TCGA-EB-A3Y7-01 1 248616485 248616485 C T OR2T2 Silent p.N129N 0.18 TCGA-EB-A3Y7-01 1 248789789 248789789 G A OR2T11 Missense_Mutation p.S214F 0.46 deleterious(0) probably_damaging(0.926) TCGA-EB-A3Y7-01 1 24987244 24987244 C T SRRM1 Silent p.S450S 0.14 TCGA-EB-A3Y7-01 1 26080014 26080014 C T MAN1C1 Silent p.L292L 0.24 TCGA-EB-A3Y7-01 1 26508876 26508876 G A CNKSR1 Missense_Mutation p.G168S 0.18 tolerated(1) benign(0.003) TCGA-EB-A3Y7-01 1 26691530 26691530 G A ZNF683 Silent p.P169P 0.20 TCGA-EB-A3Y7-01 1 27120612 27120612 C T PIGV Silent p.F29F 0.12 TCGA-EB-A3Y7-01 1 27440325 27440325 C G SLC9A1 Missense_Mutation p.V269L 0.18 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y7-01 1 28476463 28476463 G A PTAFR 3'UTR 0.24 TCGA-EB-A3Y7-01 1 33117641 33117641 A G RBBP4 Missense_Mutation p.Q48R 0.23 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 1 33985064 33985064 C A CSMD2 Splice_Site 0.20 TCGA-EB-A3Y7-01 1 34038151 34038151 C T CSMD2 Missense_Mutation p.D2575N 0.22 tolerated(0.17) benign(0.063) TCGA-EB-A3Y7-01 1 3407057 3407057 G A MEGF6 3'UTR 0.31 TCGA-EB-A3Y7-01 1 34209145 34209145 C T CSMD2 Missense_Mutation p.D597N 0.26 tolerated(0.42) benign(0.3) TCGA-EB-A3Y7-01 1 34330332 34330332 G A HMGB4 Silent p.G180G 0.26 TCGA-EB-A3Y7-01 1 34666372 34666372 G A C1orf94 Splice_Site p.X337_splice 0.31 TCGA-EB-A3Y7-01 1 35227539 35227539 A T GJB4 Missense_Mutation p.E228D 0.15 tolerated(0.49) benign(0) TCGA-EB-A3Y7-01 1 36757056 36757056 C T THRAP3 Silent p.S609S 0.34 TCGA-EB-A3Y7-01 1 39799927 39799927 C T MACF1 Intron 0.35 TCGA-EB-A3Y7-01 1 41107522 41107522 C T RIMS3 Missense_Mutation p.E26K 0.25 deleterious_low_confidence(0) possibly_damaging(0.569) TCGA-EB-A3Y7-01 1 41228590 41228590 G A NFYC Missense_Mutation p.G198S 0.28 tolerated(0.09) possibly_damaging(0.69) TCGA-EB-A3Y7-01 1 41304141 41304141 C T KCNQ4 Silent p.S678S 0.27 TCGA-EB-A3Y7-01 1 41493903 41493903 G A SCMH1 Missense_Mutation p.S649F 0.26 deleterious(0) possibly_damaging(0.781) TCGA-EB-A3Y7-01 1 43778105 43778105 G A TIE1 Missense_Mutation p.G587E 0.28 tolerated(0.4) possibly_damaging(0.771) TCGA-EB-A3Y7-01 1 43886973 43886973 C T SZT2 Missense_Mutation p.P542L 0.33 deleterious(0.01) benign(0.329) TCGA-EB-A3Y7-01 1 46872027 46872027 C T FAAH Missense_Mutation p.P313L 0.16 deleterious(0.01) possibly_damaging(0.898) TCGA-EB-A3Y7-01 1 47325350 47325350 G A CYP4Z2P RNA 0.06 TCGA-EB-A3Y7-01 1 47571909 47571909 C T CYP4Z1 Missense_Mutation p.P393S 0.14 tolerated(0.14) probably_damaging(0.96) TCGA-EB-A3Y7-01 1 53704200 53704200 G A MAGOH 5'UTR 0.35 TCGA-EB-A3Y7-01 1 54417813 54417813 C T LRRC42 Silent p.F47F 0.24 TCGA-EB-A3Y7-01 1 54665848 54665848 T C MRPL37 5'UTR 0.24 TCGA-EB-A3Y7-01 1 54867589 54867589 G A SSBP3 Missense_Mutation p.P74L 0.20 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 1 55063089 55063089 G A ACOT11 Splice_Site p.X255_splice 0.33 TCGA-EB-A3Y7-01 1 55119023 55119023 G A MROH7 Missense_Mutation p.G142R 0.24 tolerated_low_confidence(0.3) benign(0.022) TCGA-EB-A3Y7-01 1 57481055 57481055 G A DAB1 Silent p.P315P 0.25 TCGA-EB-A3Y7-01 1 62594545 62594545 A G INADL Silent p.Q1733Q 0.19 TCGA-EB-A3Y7-01 1 6536035 6536035 C T PLEKHG5 Silent p.V114V 0.29 TCGA-EB-A3Y7-01 1 65855093 65855093 T G DNAJC6 Missense_Mutation p.S450A 0.29 deleterious(0) benign(0.38) TCGA-EB-A3Y7-01 1 66102129 66102129 G A LEPR Missense_Mutation p.E977K 0.22 tolerated(0.38) benign(0.281) TCGA-EB-A3Y7-01 1 75009718 75009718 G A TNNI3K 3'UTR 0.38 TCGA-EB-A3Y7-01 1 8075622 8075622 G A ERRFI1 Silent p.L20L 0.24 TCGA-EB-A3Y7-01 1 87033186 87033186 G A CLCA4 Missense_Mutation p.G345E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 1 92979177 92979177 C T EVI5 3'UTR 0.33 TCGA-EB-A3Y7-01 20 10030860 10030860 G A ANKEF1 Missense_Mutation p.G548E 0.25 deleterious(0) probably_damaging(0.987) TCGA-EB-A3Y7-01 20 10030861 10030861 G A ANKEF1 Splice_Site p.X548_splice 0.25 TCGA-EB-A3Y7-01 20 13610664 13610664 G A TASP1 Missense_Mutation p.S21L 0.29 tolerated_low_confidence(0.13) benign(0.001) TCGA-EB-A3Y7-01 20 18022346 18022346 C T OVOL2 Missense_Mutation p.D115N 0.18 tolerated(0.15) benign(0.022) TCGA-EB-A3Y7-01 20 1961150 1961150 C T PDYN Missense_Mutation p.G195E 0.33 tolerated(0.1) benign(0.124) TCGA-EB-A3Y7-01 20 2597889 2597889 C T TMC2 Silent p.F704F 0.25 TCGA-EB-A3Y7-01 20 30371683 30371683 C T TPX2 Missense_Mutation p.H458Y 0.27 deleterious(0) probably_damaging(0.989) TCGA-EB-A3Y7-01 20 30381722 30381722 C T TPX2 Silent p.I527I 0.29 TCGA-EB-A3Y7-01 20 3202495 3202495 C T ITPA Silent p.I140I 0.24 TCGA-EB-A3Y7-01 20 32345045 32345045 C T ZNF341 Missense_Mutation p.P278L 0.32 tolerated(0.59) benign(0.011) TCGA-EB-A3Y7-01 20 33329624 33329624 A T NCOA6 Nonsense_Mutation p.L1479* 0.26 TCGA-EB-A3Y7-01 20 33851728 33851728 G A MMP24 Missense_Mutation p.D318N 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 20 3679901 3679901 C T SIGLEC1 Silent p.R578R 0.44 TCGA-EB-A3Y7-01 20 37536457 37536457 G A PPP1R16B Missense_Mutation p.E303K 0.21 tolerated(0.26) probably_damaging(0.92) TCGA-EB-A3Y7-01 20 3842993 3842993 C T MAVS Silent p.A186A 0.31 TCGA-EB-A3Y7-01 20 39990594 39990594 C T EMILIN3 Missense_Mutation p.A539T 0.37 tolerated(0.44) benign(0.017) TCGA-EB-A3Y7-01 20 40733329 40733329 G A PTPRT Silent p.I1140I 0.34 TCGA-EB-A3Y7-01 20 43585097 43585097 G A TOMM34 Missense_Mutation p.L53F 0.23 deleterious(0) probably_damaging(0.992) TCGA-EB-A3Y7-01 20 43752384 43752384 C T WFDC12 3'UTR 0.20 TCGA-EB-A3Y7-01 20 43836268 43836268 A T SEMG1 Missense_Mutation p.K110N 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A3Y7-01 20 43837149 43837149 A T SEMG1 Missense_Mutation p.K404I 0.22 deleterious(0.02) possibly_damaging(0.478) TCGA-EB-A3Y7-01 20 43837265 43837265 G A SEMG1 Missense_Mutation p.D443N 0.32 tolerated(0.5) benign(0.011) TCGA-EB-A3Y7-01 20 43851480 43851480 G A SEMG2 Missense_Mutation p.E403K 0.32 tolerated(0.16) benign(0.446) TCGA-EB-A3Y7-01 20 43926885 43926885 G A MATN4 Missense_Mutation p.R451C 0.28 probably_damaging(0.994) TCGA-EB-A3Y7-01 20 44003923 44003923 C T TP53TG5 Missense_Mutation p.R175K 0.25 tolerated(0.35) benign(0.038) TCGA-EB-A3Y7-01 20 44162942 44162942 G A WFDC6 3'UTR 0.25 TCGA-EB-A3Y7-01 20 45131444 45131444 C T ZNF334 Missense_Mutation p.M178I 0.36 tolerated(0.17) benign(0.001) TCGA-EB-A3Y7-01 20 45801439 45801439 G A EYA2 Silent p.V374V 0.23 TCGA-EB-A3Y7-01 20 47588883 47588883 C T ARFGEF2 Silent p.F482F 0.19 TCGA-EB-A3Y7-01 20 47768181 47768181 G A STAU1 Missense_Mutation p.H150Y 0.24 deleterious(0.02) probably_damaging(0.955) TCGA-EB-A3Y7-01 20 49366490 49366490 C T PARD6B Missense_Mutation p.S195F 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 20 52192387 52192387 G A ZNF217 Silent p.F972F 0.24 TCGA-EB-A3Y7-01 20 58544043 58544043 C T CDH26 Nonsense_Mutation p.Q31* 0.21 TCGA-EB-A3Y7-01 20 60551375 60551375 G A TAF4 Missense_Mutation p.S1036L 0.25 benign(0.062) TCGA-EB-A3Y7-01 20 61834702 61834702 G A YTHDF1 Missense_Mutation p.S197F 0.24 deleterious(0.01) benign(0.139) TCGA-EB-A3Y7-01 20 62837080 62837080 G A MYT1 Silent p.S108S 0.35 TCGA-EB-A3Y7-01 20 62839438 62839438 G A MYT1 Missense_Mutation p.E297K 0.31 benign(0.218) TCGA-EB-A3Y7-01 20 8722194 8722194 G A PLCB1 Missense_Mutation p.E833K 0.27 deleterious(0.04) benign(0.328) TCGA-EB-A3Y7-01 20 9546864 9546864 G T PAK7 Silent p.P386P 0.22 TCGA-EB-A3Y7-01 21 15352143 15352143 C T ANKRD20A11P RNA 0.17 TCGA-EB-A3Y7-01 21 30968800 30968800 C T GRIK1-AS2 3'UTR 0.24 TCGA-EB-A3Y7-01 21 31538314 31538314 C T CLDN17 Missense_Mutation p.D208N 0.19 tolerated(0.47) benign(0.001) TCGA-EB-A3Y7-01 21 33032063 33032063 T C SOD1 5'UTR 0.31 TCGA-EB-A3Y7-01 21 33686945 33686945 G A MRAP 3'Flank 0.25 TCGA-EB-A3Y7-01 21 34011391 34011391 G A SYNJ1 Missense_Mutation p.P1287S 0.23 tolerated_low_confidence(0.08) benign(0.133) TCGA-EB-A3Y7-01 21 38098612 38098612 G A SIM2 Missense_Mutation p.D246N 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y7-01 21 38858780 38858780 A T DYRK1A Silent p.A176A 0.28 TCGA-EB-A3Y7-01 21 39087261 39087261 G A KCNJ6 Missense_Mutation p.H67Y 0.31 tolerated(0.31) probably_damaging(0.981) TCGA-EB-A3Y7-01 21 39087276 39087276 T G KCNJ6 Missense_Mutation p.K62Q 0.26 tolerated(0.47) benign(0.178) TCGA-EB-A3Y7-01 21 41450695 41450695 A T DSCAM Missense_Mutation p.Y1544N 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 21 41450752 41450752 G A DSCAM Nonsense_Mutation p.Q1525* 0.30 TCGA-EB-A3Y7-01 21 42769569 42769569 T C MX2 Missense_Mutation p.V367A 0.29 deleterious(0) possibly_damaging(0.67) TCGA-EB-A3Y7-01 21 43999855 43999855 C T SLC37A1 Missense_Mutation p.R511C 0.16 deleterious(0) probably_damaging(0.97) TCGA-EB-A3Y7-01 21 45053174 45053174 G A HSF2BP Silent p.V140V 0.34 TCGA-EB-A3Y7-01 21 45826648 45826648 G A TRPM2 Missense_Mutation p.G988S 0.64 tolerated(0.21) benign(0.273) TCGA-EB-A3Y7-01 21 46057401 46057401 C T KRTAP10-10 Missense_Mutation p.P23S 0.30 deleterious(0.02) benign(0) TCGA-EB-A3Y7-01 21 46603350 46603350 C T ADARB1 Nonsense_Mutation p.Q441* 0.33 TCGA-EB-A3Y7-01 21 47329397 47329397 G A PCBP3 Silent p.R156R 0.27 TCGA-EB-A3Y7-01 21 47704322 47704322 C T MCM3AP Silent p.R293R 0.24 TCGA-EB-A3Y7-01 21 47704323 47704323 C T MCM3AP Missense_Mutation p.R293K 0.24 deleterious(0.01) benign(0.299) TCGA-EB-A3Y7-01 22 16287928 16287928 C T POTEH 5'UTR 0.22 TCGA-EB-A3Y7-01 22 17288945 17288945 C T XKR3 Missense_Mutation p.E7K 0.33 tolerated(0.27) possibly_damaging(0.636) TCGA-EB-A3Y7-01 22 18301650 18301650 G A MICAL3 Silent p.P1259P 0.32 TCGA-EB-A3Y7-01 22 19839744 19839744 G A C22orf29 Missense_Mutation p.P14L 0.28 tolerated_low_confidence(0.05) probably_damaging(0.918) TCGA-EB-A3Y7-01 22 24759283 24759283 C A SPECC1L Missense_Mutation p.P933H 0.20 deleterious(0.02) possibly_damaging(0.553) TCGA-EB-A3Y7-01 22 29383180 29383180 C T ZNRF3 Silent p.V139V 0.24 TCGA-EB-A3Y7-01 22 29383181 29383181 C T ZNRF3 Silent p.L140L 0.25 TCGA-EB-A3Y7-01 22 31008936 31008936 C T TCN2 Missense_Mutation p.L112F 0.26 deleterious(0) possibly_damaging(0.704) TCGA-EB-A3Y7-01 22 32546336 32546336 G A C22orf42 Silent p.V208V 0.22 TCGA-EB-A3Y7-01 22 37695333 37695333 C T CYTH4 Silent p.L140L 0.29 TCGA-EB-A3Y7-01 22 38201588 38201588 C T H1F0 Missense_Mutation p.P13S 0.22 deleterious(0.04) possibly_damaging(0.857) TCGA-EB-A3Y7-01 22 38379576 38379576 G A SOX10 Silent p.I72I 0.31 TCGA-EB-A3Y7-01 22 40283618 40283618 G A ENTHD1 Silent p.F45F 0.27 TCGA-EB-A3Y7-01 22 41919926 41919926 C T ACO2 Missense_Mutation p.A488V 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 22 41919927 41919927 C T ACO2 Silent p.A488A 0.38 TCGA-EB-A3Y7-01 22 41936800 41936800 C A POLR3H Splice_Site p.X38_splice 0.18 TCGA-EB-A3Y7-01 22 46657116 46657116 C T PKDREJ Missense_Mutation p.D702N 0.22 deleterious(0.03) probably_damaging(0.946) TCGA-EB-A3Y7-01 22 46681159 46681159 A C TTC38 Missense_Mutation p.T273P 0.21 tolerated(0.06) benign(0.038) TCGA-EB-A3Y7-01 22 50719308 50719308 G A PLXNB2 Silent p.F1286F 0.28 TCGA-EB-A3Y7-01 2 101652567 101652567 A T TBC1D8 Missense_Mutation p.C491S 0.25 tolerated(0.34) possibly_damaging(0.889) TCGA-EB-A3Y7-01 2 101652568 101652568 C T TBC1D8 Silent p.V490V 0.26 TCGA-EB-A3Y7-01 2 103281750 103281750 C T SLC9A2 Silent p.F315F 0.26 TCGA-EB-A3Y7-01 2 106498219 106498219 C T NCK2 Missense_Mutation p.T221I 0.26 tolerated(0.48) benign(0.009) TCGA-EB-A3Y7-01 2 107040008 107040008 G A RGPD3 Missense_Mutation p.S1472F 0.21 tolerated(0.07) benign(0.002) TCGA-EB-A3Y7-01 2 108489341 108489341 G A RGPD4 Missense_Mutation p.M1627I 0.21 tolerated_low_confidence(0.11) benign(0.001) TCGA-EB-A3Y7-01 2 108618424 108618424 A T SLC5A7 Missense_Mutation p.K223N 0.23 tolerated(0.62) benign(0.004) TCGA-EB-A3Y7-01 2 108622547 108622547 C T SLC5A7 Missense_Mutation p.L262F 0.31 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y7-01 2 109086302 109086302 C T GCC2 Nonsense_Mutation p.Q173* 0.25 TCGA-EB-A3Y7-01 2 109489911 109489911 C T CCDC138 Silent p.S566S 0.24 TCGA-EB-A3Y7-01 2 111789222 111789222 G A ACOXL Missense_Mutation p.D434N 0.31 deleterious(0.02) possibly_damaging(0.669) TCGA-EB-A3Y7-01 2 114398994 114398994 C T RABL2A Silent p.F157F 0.21 TCGA-EB-A3Y7-01 2 114699760 114699760 C T ACTR3 Intron 0.26 TCGA-EB-A3Y7-01 2 122494478 122494478 C T NIFK 5'UTR 0.17 TCGA-EB-A3Y7-01 2 131704087 131704087 G A ARHGEF4 Nonsense_Mutation p.W102* 0.30 TCGA-EB-A3Y7-01 2 132905712 132905712 C T ANKRD30BL 3'UTR 0.26 TCGA-EB-A3Y7-01 2 137928373 137928373 C T THSD7B Missense_Mutation p.H530Y 0.20 deleterious(0.02) benign(0.291) TCGA-EB-A3Y7-01 2 138330067 138330067 C A THSD7B Missense_Mutation p.L1125I 0.30 deleterious(0.03) unknown(0) TCGA-EB-A3Y7-01 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.28 tolerated(0.95) unknown(0) TCGA-EB-A3Y7-01 2 149226808 149226808 C T MBD5 Silent p.T432T 0.38 TCGA-EB-A3Y7-01 2 152573941 152573941 G T NEB Missense_Mutation p.Q271K 0.17 possibly_damaging(0.524) TCGA-EB-A3Y7-01 2 160806181 160806181 C T PLA2R1 Missense_Mutation p.G1216E 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 2 160811739 160811739 C T PLA2R1 Missense_Mutation p.G1091D 0.20 tolerated(0.1) benign(0.026) TCGA-EB-A3Y7-01 2 163124007 163124007 G A IFIH1 Silent p.I960I 0.25 TCGA-EB-A3Y7-01 2 166152569 166152569 A G SCN2A Missense_Mutation p.E79G 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 2 166179874 166179874 A C SCN2A Missense_Mutation p.Q627P 0.25 tolerated(0.1) possibly_damaging(0.907) TCGA-EB-A3Y7-01 2 168102316 168102316 G A XIRP2 Missense_Mutation p.E1472K 0.25 benign(0.06) TCGA-EB-A3Y7-01 2 169758955 169758955 G A G6PC2 Nonsense_Mutation p.W73* 0.29 TCGA-EB-A3Y7-01 2 169842648 169842648 C T ABCB11 Missense_Mutation p.G352E 0.29 tolerated(0.78) benign(0.002) TCGA-EB-A3Y7-01 2 170053486 170053486 G A LRP2 Missense_Mutation p.P2878L 0.28 possibly_damaging(0.521) TCGA-EB-A3Y7-01 2 170115727 170115727 C T LRP2 Missense_Mutation p.G774E 0.30 benign(0.077) TCGA-EB-A3Y7-01 2 170366384 170366384 C T KLHL41 Silent p.F32F 0.23 TCGA-EB-A3Y7-01 2 170366961 170366961 C T KLHL41 Missense_Mutation p.R225C 0.23 deleterious(0) possibly_damaging(0.693) TCGA-EB-A3Y7-01 2 175436505 175436505 G A WIPF1 Missense_Mutation p.S343L 0.22 tolerated(0.41) benign(0.055) TCGA-EB-A3Y7-01 2 178326706 178326706 C T AGPS Missense_Mutation p.S319L 0.16 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 2 179424634 179424634 G A TTN Missense_Mutation p.P28742L 0.27 TCGA-EB-A3Y7-01 2 179435608 179435608 C T TTN Missense_Mutation p.R25084Q 0.23 TCGA-EB-A3Y7-01 2 179436049 179436049 C T TTN Missense_Mutation p.G24937E 0.27 TCGA-EB-A3Y7-01 2 179438953 179438953 C G TTN Missense_Mutation p.G23969A 0.15 TCGA-EB-A3Y7-01 2 179442846 179442846 C T TTN Missense_Mutation p.R22799K 0.29 TCGA-EB-A3Y7-01 2 179463295 179463295 C T TTN Missense_Mutation p.G19017R 0.16 TCGA-EB-A3Y7-01 2 179466079 179466079 A C TTN Missense_Mutation p.Y18549D 0.28 TCGA-EB-A3Y7-01 2 179476318 179476318 C T TTN Missense_Mutation p.G16880S 0.33 TCGA-EB-A3Y7-01 2 179477263 179477263 G A TTN Silent p.I16663I 0.22 TCGA-EB-A3Y7-01 2 179486272 179486272 G A TTN Silent p.H15093H 0.34 TCGA-EB-A3Y7-01 2 179542438 179542438 C T TTN Missense_Mutation p.E11401K 0.31 TCGA-EB-A3Y7-01 2 179578626 179578626 G A TTN Missense_Mutation p.S8920L 0.43 TCGA-EB-A3Y7-01 2 179582076 179582076 G A TTN Missense_Mutation p.P8462L 0.35 TCGA-EB-A3Y7-01 2 179585223 179585223 C T TTN Missense_Mutation p.D7756N 0.33 TCGA-EB-A3Y7-01 2 179586714 179586714 C T TTN Missense_Mutation p.G7559E 0.26 TCGA-EB-A3Y7-01 2 179604270 179604270 C T TTN Missense_Mutation p.E4564K 0.25 TCGA-EB-A3Y7-01 2 179610707 179610707 C T TTN Intron 0.30 TCGA-EB-A3Y7-01 2 179633464 179633464 C T TTN Silent p.G3033G 0.20 TCGA-EB-A3Y7-01 2 180838387 180838387 G A CWC22 Nonsense_Mutation p.R242* 0.21 TCGA-EB-A3Y7-01 2 18112294 18112294 T A KCNS3 Missense_Mutation p.F7I 0.30 deleterious(0.01) benign(0.045) TCGA-EB-A3Y7-01 2 181846925 181846925 T C UBE2E3 Silent p.S52S 0.24 TCGA-EB-A3Y7-01 2 186673115 186673115 G A FSIP2 Missense_Mutation p.R6450K 0.27 benign(0.014) TCGA-EB-A3Y7-01 2 189907882 189907882 G A COL5A2 Missense_Mutation p.P1156S 0.33 unknown(0) TCGA-EB-A3Y7-01 2 190428583 190428583 C T SLC40A1 Missense_Mutation p.G377R 0.45 tolerated(0.08) possibly_damaging(0.873) TCGA-EB-A3Y7-01 2 190619038 190619038 C A OSGEPL1 Nonsense_Mutation p.E215* 0.45 TCGA-EB-A3Y7-01 2 191523919 191523919 C T NAB1 Missense_Mutation p.P6L 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 2 196741424 196741424 C T DNAH7 Splice_Site p.X1988_splice 0.26 TCGA-EB-A3Y7-01 2 196837110 196837110 G A DNAH7 Silent p.F638F 0.25 TCGA-EB-A3Y7-01 2 201437076 201437076 C T SGOL2 Silent p.I669I 0.22 TCGA-EB-A3Y7-01 2 201464445 201464445 G A AOX1 Missense_Mutation p.D138N 0.34 deleterious(0.04) benign(0.297) TCGA-EB-A3Y7-01 2 203420145 203420145 C A BMPR2 Nonsense_Mutation p.S586* 0.25 TCGA-EB-A3Y7-01 2 203622061 203622061 C T FAM117B Silent p.S410S 0.35 TCGA-EB-A3Y7-01 2 21225858 21225858 C T APOB Missense_Mutation p.D4146N 0.24 benign(0.002) TCGA-EB-A3Y7-01 2 21231109 21231109 T A APOB Silent p.I2877I 0.29 TCGA-EB-A3Y7-01 2 21234321 21234321 C T APOB Missense_Mutation p.D1807N 0.31 possibly_damaging(0.518) TCGA-EB-A3Y7-01 2 21234493 21234493 C T APOB Missense_Mutation p.M1749I 0.29 benign(0.007) TCGA-EB-A3Y7-01 2 214174840 214174840 C T SPAG16 Missense_Mutation p.L113F 0.36 tolerated(0.23) possibly_damaging(0.824) TCGA-EB-A3Y7-01 2 217148305 217148305 G A MARCH4 Missense_Mutation p.P222S 0.20 deleterious(0.02) possibly_damaging(0.727) TCGA-EB-A3Y7-01 2 219360507 219360507 A G USP37 Missense_Mutation p.V483A 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3Y7-01 2 227876983 227876983 C T COL4A4 Missense_Mutation p.R1416K 0.26 unknown(0) TCGA-EB-A3Y7-01 2 228162509 228162509 C T COL4A3 Silent p.L1229L 0.25 TCGA-EB-A3Y7-01 2 230456386 230456386 G A DNER Silent p.I165I 0.26 TCGA-EB-A3Y7-01 2 231157430 231157430 G A SP140 Missense_Mutation p.G632E 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 2 232392916 232392916 C T NMUR1 Silent p.R272R 0.24 TCGA-EB-A3Y7-01 2 233245175 233245175 C T ALPP Silent p.L280L 0.26 TCGA-EB-A3Y7-01 2 234112876 234112876 C T INPP5D Missense_Mutation p.S1015F 0.36 deleterious(0) possibly_damaging(0.622) TCGA-EB-A3Y7-01 2 238925255 238925255 C T UBE2F Missense_Mutation p.P88S 0.26 tolerated(0.06) probably_damaging(0.933) TCGA-EB-A3Y7-01 2 239306219 239306219 C T TRAF3IP1 Silent p.I603I 0.32 TCGA-EB-A3Y7-01 2 241405643 241405643 C T GPC1 Missense_Mutation p.P538L 0.33 tolerated(0.47) benign(0) TCGA-EB-A3Y7-01 2 241622208 241622208 G A AQP12B Missense_Mutation p.T16I 0.24 tolerated(0.12) benign(0.017) TCGA-EB-A3Y7-01 2 241969873 241969873 G A SNED1 Missense_Mutation p.R129Q 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A3Y7-01 2 242062183 242062183 G A PASK Silent p.F1012F 0.26 TCGA-EB-A3Y7-01 2 24303886 24303886 C T TP53I3 Missense_Mutation p.G141E 0.27 deleterious(0.04) benign(0.063) TCGA-EB-A3Y7-01 2 24413540 24413540 G A FAM228A 3'UTR 0.56 TCGA-EB-A3Y7-01 2 27167644 27167644 C T DPYSL5 Missense_Mutation p.R521W 0.33 deleterious(0) benign(0.399) TCGA-EB-A3Y7-01 2 27479691 27479691 G A SLC30A3 Missense_Mutation p.P283L 0.26 deleterious(0) benign(0.021) TCGA-EB-A3Y7-01 2 29383308 29383308 C T CLIP4 Silent p.F503F 0.29 TCGA-EB-A3Y7-01 2 30998885 30998885 C T CAPN13 Missense_Mutation p.G100R 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 2 30998886 30998886 C T CAPN13 Silent p.L99L 0.21 TCGA-EB-A3Y7-01 2 32689819 32689819 C T BIRC6 Silent p.F1728F 0.35 TCGA-EB-A3Y7-01 2 32824950 32824950 C T BIRC6 Missense_Mutation p.L4659F 0.33 probably_damaging(0.999) TCGA-EB-A3Y7-01 2 33500931 33500931 C T LTBP1 Missense_Mutation p.A978V 0.26 deleterious(0.01) benign(0.07) TCGA-EB-A3Y7-01 2 38178765 38178765 C T RMDN2 Missense_Mutation p.S136F 0.28 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-EB-A3Y7-01 2 38916981 38916981 A G GALM Silent p.E193E 0.21 TCGA-EB-A3Y7-01 2 44508548 44508548 C T SLC3A1 Silent p.F211F 0.36 TCGA-EB-A3Y7-01 2 44547576 44547576 G A SLC3A1 Missense_Mutation p.R619K 0.31 tolerated(0.96) benign(0.001) TCGA-EB-A3Y7-01 2 48018165 48018165 C A MSH6 Silent p.I120I 0.34 TCGA-EB-A3Y7-01 2 48018166 48018166 C T MSH6 Missense_Mutation p.R121C 0.34 deleterious(0) probably_damaging(0.94) TCGA-EB-A3Y7-01 2 61468711 61468711 G A USP34 Missense_Mutation p.S2254L 0.27 deleterious(0) possibly_damaging(0.732) TCGA-EB-A3Y7-01 2 69093461 69093461 C T BMP10 Missense_Mutation p.G193R 0.19 tolerated(0.14) possibly_damaging(0.734) TCGA-EB-A3Y7-01 2 70165441 70165441 C T MXD1 3'UTR 0.27 TCGA-EB-A3Y7-01 2 71185208 71185208 C T ATP6V1B1 Silent p.T69T 0.25 TCGA-EB-A3Y7-01 2 71376437 71376437 C T MPHOSPH10 Nonsense_Mutation p.Q584* 0.21 TCGA-EB-A3Y7-01 2 71417122 71417122 G A PAIP2B Silent p.F56F 0.36 TCGA-EB-A3Y7-01 2 7179793 7179793 C T RNF144A Missense_Mutation p.L261F 0.27 tolerated(0.09) benign(0.379) TCGA-EB-A3Y7-01 2 71887719 71887719 G A DYSF Silent p.G1647G 0.29 TCGA-EB-A3Y7-01 2 74477643 74477643 A G SLC4A5 Missense_Mutation p.F494L 0.29 tolerated(0.99) benign(0.257) TCGA-EB-A3Y7-01 2 74699807 74699807 G A MRPL53 5'UTR 0.22 TCGA-EB-A3Y7-01 2 76975718 76975718 G A LRRTM4 3'UTR 0.29 TCGA-EB-A3Y7-01 2 79314675 79314675 C T REG1B Missense_Mutation p.G22S 0.35 deleterious(0.03) possibly_damaging(0.855) TCGA-EB-A3Y7-01 2 85276756 85276756 A G KCMF1 Missense_Mutation p.Q290R 0.24 tolerated(0.09) benign(0.009) TCGA-EB-A3Y7-01 2 88396303 88396303 G A SMYD1 Silent p.K296K 0.27 TCGA-EB-A3Y7-01 2 98996643 98996643 C T CNGA3 Missense_Mutation p.S74L 0.23 tolerated(0.35) benign(0.158) TCGA-EB-A3Y7-01 3 101572106 101572106 C T NFKBIZ Missense_Mutation p.P246S 0.26 tolerated_low_confidence(0.31) benign(0.005) TCGA-EB-A3Y7-01 3 10362792 10362792 G A SEC13 5'UTR 0.18 TCGA-EB-A3Y7-01 3 105271375 105271375 T C ALCAM Missense_Mutation p.L537P 0.26 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y7-01 3 107097085 107097085 G A CCDC54 Missense_Mutation p.M217I 0.31 tolerated(1) benign(0) TCGA-EB-A3Y7-01 3 108229371 108229371 G A MYH15 Silent p.L23L 0.24 TCGA-EB-A3Y7-01 3 108409839 108409839 G A DZIP3 Intron 0.47 TCGA-EB-A3Y7-01 3 108690227 108690227 G A MORC1 Missense_Mutation p.P834S 0.20 deleterious(0.01) benign(0.098) TCGA-EB-A3Y7-01 3 109047785 109047785 G A DPPA4 Missense_Mutation p.P277L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 3 109052816 109052816 C T DPPA4 Missense_Mutation p.E27K 0.30 tolerated(0.14) benign(0.029) TCGA-EB-A3Y7-01 3 10975791 10975791 G A SLC6A11 Missense_Mutation p.G505D 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 3 11067256 11067256 T G SLC6A1 Missense_Mutation p.L279R 0.24 deleterious(0) possibly_damaging(0.883) TCGA-EB-A3Y7-01 3 11071014 11071014 G A SLC6A1 Silent p.L433L 0.29 TCGA-EB-A3Y7-01 3 111368577 111368577 C T CD96 Missense_Mutation p.P561L 0.32 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 3 111427086 111427086 C T PLCXD2 Silent p.F159F 0.31 TCGA-EB-A3Y7-01 3 11301138 11301138 C T HRH1 Missense_Mutation p.R139C 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 3 113114674 113114674 C T WDR52 Missense_Mutation p.E605K 0.24 tolerated(0.14) benign(0.444) TCGA-EB-A3Y7-01 3 113890711 113890711 G A DRD3 Silent p.I43I 0.33 TCGA-EB-A3Y7-01 3 119133337 119133337 C T ARHGAP31 Missense_Mutation p.S854F 0.29 tolerated(0.07) benign(0.001) TCGA-EB-A3Y7-01 3 121415121 121415121 A G GOLGB1 Missense_Mutation p.S1417P 0.27 possibly_damaging(0.844) TCGA-EB-A3Y7-01 3 121712369 121712369 A G ILDR1 Silent p.N409N 0.24 TCGA-EB-A3Y7-01 3 121774339 121774339 G A CD86 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0.063) TCGA-EB-A3Y7-01 3 124438146 124438146 C T RP11-71H17.7 5'Flank 0.20 TCGA-EB-A3Y7-01 3 124810354 124810354 G A SLC12A8 Missense_Mutation p.T617I 0.38 deleterious(0) possibly_damaging(0.774) TCGA-EB-A3Y7-01 3 126138579 126138579 G A CCDC37 Silent p.K277K 0.33 TCGA-EB-A3Y7-01 3 126155263 126155263 G A CCDC37 3'UTR 0.28 TCGA-EB-A3Y7-01 3 12845062 12845062 G A CAND2 Silent p.K48K 0.20 TCGA-EB-A3Y7-01 3 130187686 130187686 C T COL6A5 Missense_Mutation p.P2280S 0.24 tolerated(0.49) benign(0.009) TCGA-EB-A3Y7-01 3 130289789 130289789 G A COL6A6 Silent p.K843K 0.13 TCGA-EB-A3Y7-01 3 139894815 139894815 C T CLSTN2 Silent p.I44I 0.28 TCGA-EB-A3Y7-01 3 140866008 140866008 T G SPSB4 Missense_Mutation p.L240R 0.19 deleterious(0) possibly_damaging(0.614) TCGA-EB-A3Y7-01 3 14175300 14175300 C T TMEM43 Missense_Mutation p.L192F 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A3Y7-01 3 142681328 142681328 A T PAQR9 Missense_Mutation p.L284Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 3 142840684 142840684 C T CHST2 Silent p.I342I 0.60 TCGA-EB-A3Y7-01 3 147120535 147120535 C T ZIC4 Missense_Mutation p.R67Q 0.28 tolerated_low_confidence(0.15) possibly_damaging(0.885) TCGA-EB-A3Y7-01 3 148459216 148459216 C T AGTR1 Missense_Mutation p.H132Y 0.21 deleterious(0.05) benign(0.11) TCGA-EB-A3Y7-01 3 151545536 151545536 C T AADAC Missense_Mutation p.S259L 0.24 deleterious(0.02) possibly_damaging(0.521) TCGA-EB-A3Y7-01 3 155200266 155200266 C T PLCH1 Silent p.E1191E 0.19 TCGA-EB-A3Y7-01 3 156423002 156423002 G A TIPARP 3'UTR 0.41 TCGA-EB-A3Y7-01 3 156423003 156423003 G A TIPARP 3'UTR 0.40 TCGA-EB-A3Y7-01 3 164751193 164751193 G A SI Missense_Mutation p.S852L 0.20 tolerated(0.11) benign(0.027) TCGA-EB-A3Y7-01 3 166960300 166960300 C T ZBBX Missense_Mutation p.E796K 0.17 deleterious(0.02) possibly_damaging(0.713) TCGA-EB-A3Y7-01 3 167183367 167183367 C T SERPINI2 Silent p.Q191Q 0.27 TCGA-EB-A3Y7-01 3 167512410 167512410 G A SERPINI1 Missense_Mutation p.E227K 0.25 tolerated(0.61) benign(0.23) TCGA-EB-A3Y7-01 3 167745528 167745528 T C GOLIM4 Silent p.E537E 0.29 TCGA-EB-A3Y7-01 3 169814929 169814929 T A PHC3 3'UTR 0.28 TCGA-EB-A3Y7-01 3 169953057 169953057 T C PRKCI Silent p.F47F 0.23 TCGA-EB-A3Y7-01 3 172165709 172165709 G A GHSR Silent p.F165F 0.34 TCGA-EB-A3Y7-01 3 183824064 183824064 G A HTR3E Silent p.G384G 0.29 TCGA-EB-A3Y7-01 3 184093374 184093374 C T THPO Missense_Mutation p.V53I 0.28 tolerated(0.45) benign(0.007) TCGA-EB-A3Y7-01 3 184299166 184299166 C T EPHB3 Missense_Mutation p.S953F 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A3Y7-01 3 184571773 184571773 T A VPS8 Nonsense_Mutation p.L317* 0.30 TCGA-EB-A3Y7-01 3 184633212 184633212 C T VPS8 Missense_Mutation p.R778W 0.39 deleterious(0) probably_damaging(0.993) TCGA-EB-A3Y7-01 3 185229341 185229341 C T LIPH Missense_Mutation p.M413I 0.22 tolerated(0.49) benign(0.002) TCGA-EB-A3Y7-01 3 189584508 189584508 G A TP63 Silent p.E268E 0.43 TCGA-EB-A3Y7-01 3 195517644 195517644 G A MUC4 Silent p.S269S 0.31 TCGA-EB-A3Y7-01 3 19554658 19554658 G A KCNH8 Missense_Mutation p.G759E 0.28 tolerated(0.29) possibly_damaging(0.52) TCGA-EB-A3Y7-01 3 197703559 197703559 C T LMLN Silent p.P174P 0.24 TCGA-EB-A3Y7-01 3 20181736 20181736 A T KAT2B Silent p.I628I 0.15 TCGA-EB-A3Y7-01 3 20181737 20181737 C T KAT2B Missense_Mutation p.P629S 0.15 tolerated(0.13) benign(0.09) TCGA-EB-A3Y7-01 3 29476278 29476278 C T RBMS3 Silent p.P40P 0.33 TCGA-EB-A3Y7-01 3 32932869 32932869 C T TRIM71 Nonsense_Mutation p.Q725* 0.20 TCGA-EB-A3Y7-01 3 33166049 33166049 G A CRTAP Silent p.K257K 0.29 TCGA-EB-A3Y7-01 3 35756928 35756928 C T ARPP21 Intron 0.23 TCGA-EB-A3Y7-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.25 deleterious(0.01) possibly_damaging(0.452) TCGA-EB-A3Y7-01 3 43381904 43381904 C T SNRK Missense_Mutation p.S286L 0.28 deleterious(0.01) possibly_damaging(0.601) TCGA-EB-A3Y7-01 3 44607049 44607051 CTC - ZKSCAN7 In_Frame_Del p.P167del 0.10 TCGA-EB-A3Y7-01 3 47361202 47361202 C T KLHL18 Silent p.F63F 0.28 TCGA-EB-A3Y7-01 3 4741624 4741624 A C ITPR1 Missense_Mutation p.Q1497P 0.22 deleterious(0) probably_damaging(0.99) TCGA-EB-A3Y7-01 3 48465047 48465047 G A PLXNB1 Missense_Mutation p.P325L 0.24 deleterious(0) possibly_damaging(0.733) TCGA-EB-A3Y7-01 3 4856811 4856811 G A ITPR1 Silent p.L2577L 0.25 TCGA-EB-A3Y7-01 3 49459563 49459563 G A AMT Missense_Mutation p.L78F 0.31 deleterious(0) possibly_damaging(0.5) TCGA-EB-A3Y7-01 3 51398015 51398015 C T DOCK3 Missense_Mutation p.S1653F 0.39 tolerated(0.21) possibly_damaging(0.553) TCGA-EB-A3Y7-01 3 51679161 51679161 C T RAD54L2 Missense_Mutation p.P858S 0.30 deleterious(0.03) possibly_damaging(0.652) TCGA-EB-A3Y7-01 3 52811720 52811720 C T ITIH1 Missense_Mutation p.S30L 0.29 tolerated(0.45) benign(0.001) TCGA-EB-A3Y7-01 3 52950208 52950208 G A SFMBT1 Missense_Mutation p.H480Y 0.26 tolerated(0.48) benign(0.062) TCGA-EB-A3Y7-01 3 62278913 62278913 A G PTPRG Silent p.V1423V 0.33 TCGA-EB-A3Y7-01 3 64601679 64601679 C T ADAMTS9 Missense_Mutation p.G994E 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-EB-A3Y7-01 3 65415652 65415652 C T MAGI1 Silent p.V570V 0.26 TCGA-EB-A3Y7-01 3 67053683 67053683 G A KBTBD8 Missense_Mutation p.A98T 0.29 deleterious(0.04) benign(0.099) TCGA-EB-A3Y7-01 3 68788299 68788299 C T FAM19A4 Missense_Mutation p.G113E 0.25 deleterious(0.05) possibly_damaging(0.896) TCGA-EB-A3Y7-01 3 69112244 69112244 G A UBA3 Silent p.S194S 0.26 TCGA-EB-A3Y7-01 3 74334467 74334467 G A CNTN3 Missense_Mutation p.T898I 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A3Y7-01 3 87302655 87302655 G A CHMP2B Missense_Mutation p.G176R 0.28 deleterious(0) possibly_damaging(0.465) TCGA-EB-A3Y7-01 3 89528675 89528675 G A EPHA3 3'UTR 0.26 TCGA-EB-A3Y7-01 3 9483374 9483374 G A SETD5 Missense_Mutation p.G303E 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 3 95374302 95374302 T C MTHFD2P1 RNA 0.27 TCGA-EB-A3Y7-01 3 96706495 96706495 G A EPHA6 Missense_Mutation p.D258N 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-EB-A3Y7-01 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 3 97202810 97202810 C T EPHA6 Missense_Mutation p.P703S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y7-01 3 9783763 9783763 C T BRPF1 Missense_Mutation p.L637F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 3 99567893 99567893 C T FILIP1L Missense_Mutation p.G876E 0.21 deleterious(0.03) probably_damaging(0.909) TCGA-EB-A3Y7-01 3 9970272 9970272 C G IL17RC Silent p.L427L 0.26 TCGA-EB-A3Y7-01 4 100235198 100235198 C T ADH1B Missense_Mutation p.G203E 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 4 100268954 100268954 G A ADH1C Missense_Mutation p.S23F 0.29 benign(0.111) TCGA-EB-A3Y7-01 4 100503174 100503174 C G MTTP Silent p.R58R 0.32 TCGA-EB-A3Y7-01 4 10078985 10078985 C T WDR1 Missense_Mutation p.D553N 0.21 deleterious(0) probably_damaging(0.954) TCGA-EB-A3Y7-01 4 107846968 107846968 G C DKK2 Missense_Mutation p.R121G 0.30 tolerated(0.22) probably_damaging(0.995) TCGA-EB-A3Y7-01 4 109839343 109839343 C T COL25A1 Silent p.G255G 0.25 TCGA-EB-A3Y7-01 4 110670693 110670693 G A CFI Nonsense_Mutation p.R336* 0.18 TCGA-EB-A3Y7-01 4 114276671 114276671 C T ANK2 Silent p.D2299D 0.25 TCGA-EB-A3Y7-01 4 115997595 115997595 G A NDST4 Missense_Mutation p.P200S 0.25 tolerated(0.14) benign(0.022) TCGA-EB-A3Y7-01 4 118975987 118975987 G A NDST3 Missense_Mutation p.D308N 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 4 123333892 123333892 G A ADAD1 Missense_Mutation p.E393K 0.22 tolerated(0.05) benign(0.175) TCGA-EB-A3Y7-01 4 126336719 126336719 G A FAT4 Missense_Mutation p.E2201K 0.20 possibly_damaging(0.472) TCGA-EB-A3Y7-01 4 129012157 129012157 T C LARP1B Silent p.S120S 0.27 TCGA-EB-A3Y7-01 4 129120679 129120679 C T LARP1B Missense_Mutation p.P697S 0.33 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y7-01 4 129120680 129120680 C T LARP1B Missense_Mutation p.P697L 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 4 138442673 138442673 G A PCDH18 Missense_Mutation p.P973L 0.31 deleterious(0.02) benign(0.021) TCGA-EB-A3Y7-01 4 141327125 141327125 G A CLGN Silent p.F130F 0.26 TCGA-EB-A3Y7-01 4 153897364 153897364 C T FHDC1 Missense_Mutation p.P974L 0.17 tolerated(0.07) benign(0.004) TCGA-EB-A3Y7-01 4 156632084 156632084 C T GUCY1A3 Missense_Mutation p.S256F 0.32 tolerated(0.11) possibly_damaging(0.753) TCGA-EB-A3Y7-01 4 156773469 156773469 C T ASIC5 Splice_Site p.X196_splice 0.28 TCGA-EB-A3Y7-01 4 157732129 157732129 T C PDGFC Missense_Mutation p.I119V 0.25 tolerated(0.32) benign(0.004) TCGA-EB-A3Y7-01 4 158073936 158073936 C T GLRB Missense_Mutation p.S324F 0.27 deleterious(0) probably_damaging(0.964) TCGA-EB-A3Y7-01 4 158224711 158224711 C T GRIA2 Silent p.S79S 0.25 TCGA-EB-A3Y7-01 4 160251152 160251152 T C RAPGEF2 Missense_Mutation p.I270T 0.30 deleterious(0) probably_damaging(0.992) TCGA-EB-A3Y7-01 4 1656720 1656720 G A FAM53A Silent p.F289F 0.15 TCGA-EB-A3Y7-01 4 167021925 167021925 C T TLL1 Missense_Mutation p.S980L 0.28 deleterious(0.02) benign(0.172) TCGA-EB-A3Y7-01 4 167021931 167021931 T A TLL1 Nonsense_Mutation p.L982* 0.27 TCGA-EB-A3Y7-01 4 169354194 169354194 C T DDX60L Missense_Mutation p.G456E 0.33 deleterious(0) probably_damaging(0.991) TCGA-EB-A3Y7-01 4 169846139 169846139 G A PALLD Missense_Mutation p.G1090R 0.29 tolerated(0.05) probably_damaging(0.962) TCGA-EB-A3Y7-01 4 175897050 175897050 G A ADAM29 Missense_Mutation p.G125E 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 4 189026024 189026024 C G TRIML2 Missense_Mutation p.L34F 0.06 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y7-01 4 25270077 25270077 G A PI4K2B Nonsense_Mutation p.W364* 0.33 TCGA-EB-A3Y7-01 4 38798249 38798249 G A TLR1 Missense_Mutation p.P735L 0.22 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 4 38829475 38829475 A G TLR6 Silent p.F540F 0.27 TCGA-EB-A3Y7-01 4 40121767 40121767 A G N4BP2 Missense_Mutation p.E679G 0.31 tolerated(0.1) probably_damaging(0.998) TCGA-EB-A3Y7-01 4 47663740 47663740 C T CORIN Missense_Mutation p.E575K 0.14 tolerated(0.11) benign(0.028) TCGA-EB-A3Y7-01 4 47788754 47788754 G A CORIN Missense_Mutation p.H133Y 0.29 tolerated(0.15) benign(0.002) TCGA-EB-A3Y7-01 4 48173409 48173409 G A TEC Silent p.L101L 0.16 TCGA-EB-A3Y7-01 4 55156515 55156515 T C PDGFRA Silent p.S972S 0.30 TCGA-EB-A3Y7-01 4 55593610 55593610 T C KIT Missense_Mutation p.V559A 0.19 deleterious(0) probably_damaging(0.912) TCGA-EB-A3Y7-01 4 5691060 5691060 G A EVC2 Missense_Mutation p.S177L 0.30 deleterious(0.01) benign(0.001) TCGA-EB-A3Y7-01 4 68691556 68691556 C T TMPRSS11D Missense_Mutation p.R330K 0.21 tolerated(1) benign(0.015) TCGA-EB-A3Y7-01 4 69513069 69513069 A T UGT2B15 Missense_Mutation p.I449N 0.27 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 4 70080209 70080209 G A UGT2B11 Missense_Mutation p.P78S 0.26 tolerated(0.08) benign(0.192) TCGA-EB-A3Y7-01 4 70462099 70462099 C T UGT2A1 Missense_Mutation p.E289K 0.24 deleterious(0.01) possibly_damaging(0.692) TCGA-EB-A3Y7-01 4 70512783 70512783 G A UGT2A1 Missense_Mutation p.P194S 0.23 deleterious(0.01) probably_damaging(1) TCGA-EB-A3Y7-01 4 70707801 70707801 G A SULT1E1 Missense_Mutation p.H266Y 0.25 tolerated(0.41) benign(0.23) TCGA-EB-A3Y7-01 4 71232595 71232595 C T SMR3A Missense_Mutation p.P97S 0.24 tolerated_low_confidence(0.19) unknown(0) TCGA-EB-A3Y7-01 4 71232663 71232663 C T SMR3A Silent p.F119F 0.38 TCGA-EB-A3Y7-01 4 71398177 71398177 C T AMTN Nonsense_Mutation p.Q209* 0.15 TCGA-EB-A3Y7-01 4 71510369 71510369 G A ENAM Missense_Mutation p.D1076N 0.27 tolerated(0.91) benign(0.001) TCGA-EB-A3Y7-01 4 73013082 73013082 C T NPFFR2 Silent p.I374I 0.24 TCGA-EB-A3Y7-01 4 73156632 73156632 G A ADAMTS3 Silent p.S957S 0.18 TCGA-EB-A3Y7-01 4 74736306 74736306 C T CXCL1 3'UTR 0.19 TCGA-EB-A3Y7-01 4 77250050 77250050 C A CCDC158 Intron 0.29 TCGA-EB-A3Y7-01 4 77700249 77700249 C T SHROOM3 Silent p.P1970P 0.24 TCGA-EB-A3Y7-01 4 79321885 79321885 C T FRAS1 Intron 0.13 TCGA-EB-A3Y7-01 4 79343025 79343025 G A FRAS1 Missense_Mutation p.E1517K 0.28 possibly_damaging(0.842) TCGA-EB-A3Y7-01 4 80246598 80246598 T G NAA11 Missense_Mutation p.Y145S 0.22 deleterious(0) probably_damaging(0.939) TCGA-EB-A3Y7-01 4 85748118 85748118 C T WDFY3 Missense_Mutation p.E325K 0.22 tolerated(0.61) benign(0.053) TCGA-EB-A3Y7-01 4 87968531 87968531 C T AFF1 Missense_Mutation p.P282S 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-EB-A3Y7-01 4 88091628 88091628 G A KLHL8 Missense_Mutation p.R450C 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 4 88977295 88977295 C T PKD2 Nonsense_Mutation p.R592* 0.30 TCGA-EB-A3Y7-01 4 96199457 96199457 C T UNC5C Missense_Mutation p.E183K 0.20 tolerated(0.23) benign(0.34) TCGA-EB-A3Y7-01 4 96761247 96761247 C T PDHA2 5'UTR 0.50 TCGA-EB-A3Y7-01 5 101575033 101575033 C T SLCO4C1 Missense_Mutation p.D646N 0.18 tolerated(0.2) possibly_damaging(0.519) TCGA-EB-A3Y7-01 5 1032271 1032271 T C NKD2 Missense_Mutation p.L49P 0.35 tolerated(0.14) benign(0.059) TCGA-EB-A3Y7-01 5 11111120 11111120 G A CTNND2 Silent p.L771L 0.33 TCGA-EB-A3Y7-01 5 115351451 115351451 T G AQPEP Silent p.A915A 0.21 TCGA-EB-A3Y7-01 5 11565118 11565118 G A CTNND2 Silent p.I75I 0.27 TCGA-EB-A3Y7-01 5 118968512 118968512 G A FAM170A Missense_Mutation p.G47E 0.22 tolerated(0.27) benign(0.128) TCGA-EB-A3Y7-01 5 121758933 121758933 T G SNCAIP Silent p.S167S 0.11 TCGA-EB-A3Y7-01 5 127680179 127680179 G A FBN2 Missense_Mutation p.P1081S 0.17 tolerated(0.18) benign(0.377) TCGA-EB-A3Y7-01 5 127727777 127727777 T A FBN2 Missense_Mutation p.T513S 0.28 tolerated(0.07) possibly_damaging(0.698) TCGA-EB-A3Y7-01 5 135286957 135286957 G A LECT2 Nonsense_Mutation p.Q82* 0.29 TCGA-EB-A3Y7-01 5 135382101 135382101 G A TGFBI Missense_Mutation p.E126K 0.19 deleterious(0.03) benign(0.307) TCGA-EB-A3Y7-01 5 13729599 13729599 C T DNAH5 Silent p.L3944L 0.22 TCGA-EB-A3Y7-01 5 139751868 139751868 C T SLC4A9 Silent p.V928V 0.24 TCGA-EB-A3Y7-01 5 140167680 140167680 G A PCDHA1 Missense_Mutation p.G602D 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EB-A3Y7-01 5 140175466 140175466 G A PCDHA2 Missense_Mutation p.G306E 0.31 deleterious_low_confidence(0.01) benign(0.106) TCGA-EB-A3Y7-01 5 140176899 140176899 G A PCDHA2 Missense_Mutation p.E784K 0.30 tolerated_low_confidence(0.09) benign(0.015) TCGA-EB-A3Y7-01 5 140209086 140209086 G A PCDHA6 Silent p.P470P 0.39 TCGA-EB-A3Y7-01 5 140221805 140221805 G A PCDHA8 Missense_Mutation p.G300E 0.35 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EB-A3Y7-01 5 140237292 140237292 C T PCDHA10 Silent p.F553F 0.29 TCGA-EB-A3Y7-01 5 140249602 140249602 G A PCDHA11 Missense_Mutation p.G305E 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-EB-A3Y7-01 5 140262692 140262692 C T PCDHA13 Missense_Mutation p.S280L 0.30 tolerated_low_confidence(0.06) benign(0.307) TCGA-EB-A3Y7-01 5 140263889 140263889 C T PCDHA13 Missense_Mutation p.S679L 0.23 deleterious_low_confidence(0.04) benign(0.001) TCGA-EB-A3Y7-01 5 140348542 140348542 T G PCDHAC2 Missense_Mutation p.C731G 0.22 tolerated(0.07) probably_damaging(0.99) TCGA-EB-A3Y7-01 5 140431454 140431454 C T PCDHB1 Silent p.F133F 0.30 TCGA-EB-A3Y7-01 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A3Y7-01 5 140530763 140530763 G A PCDHB6 Missense_Mutation p.E309K 0.32 tolerated(0.71) benign(0.003) TCGA-EB-A3Y7-01 5 140554702 140554702 C T PCDHB7 Silent p.F762F 0.27 TCGA-EB-A3Y7-01 5 140563101 140563101 G A PCDHB16 Missense_Mutation p.D323N 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A3Y7-01 5 140588650 140588650 T G PCDHB12 Missense_Mutation p.S57R 0.24 tolerated_low_confidence(0.22) benign(0.002) TCGA-EB-A3Y7-01 5 140699447 140699447 G A TAF7 Silent p.I55I 0.30 TCGA-EB-A3Y7-01 5 140735572 140735572 C T PCDHGA4 Missense_Mutation p.P269S 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.649) TCGA-EB-A3Y7-01 5 140746144 140746144 C T PCDHGA5 Silent p.F749F 0.23 TCGA-EB-A3Y7-01 5 140784918 140784918 C T PCDHGA9 Missense_Mutation p.P800L 0.24 tolerated_low_confidence(0.64) benign(0.001) TCGA-EB-A3Y7-01 5 145894432 145894432 C T GPR151 Silent p.G415G 0.26 TCGA-EB-A3Y7-01 5 146971145 146971145 G A JAKMIP2 3'UTR 0.30 TCGA-EB-A3Y7-01 5 148431805 148431805 T A SH3TC2 Splice_Site p.X18_splice 0.24 TCGA-EB-A3Y7-01 5 148929728 148929728 A G CSNK1A1 Missense_Mutation p.L47P 0.25 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-EB-A3Y7-01 5 149506143 149506143 G A PDGFRB Silent p.I538I 0.16 TCGA-EB-A3Y7-01 5 150028973 150028973 C T SYNPO Missense_Mutation p.S623F 0.21 deleterious(0) probably_damaging(0.982) TCGA-EB-A3Y7-01 5 150886965 150886965 C T FAT2 Silent p.R4089R 0.34 TCGA-EB-A3Y7-01 5 154394579 154394579 C T KIF4B Missense_Mutation p.S387F 0.27 deleterious(0) possibly_damaging(0.806) TCGA-EB-A3Y7-01 5 154395139 154395139 G A KIF4B Missense_Mutation p.E574K 0.19 deleterious(0.02) benign(0.242) TCGA-EB-A3Y7-01 5 156592810 156592810 G A FAM71B Missense_Mutation p.P124S 0.16 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y7-01 5 156592943 156592943 G A FAM71B Silent p.P79P 0.23 TCGA-EB-A3Y7-01 5 156675946 156675946 G A ITK Missense_Mutation p.G574R 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 5 160047475 160047475 G A ATP10B Silent p.G765G 0.34 TCGA-EB-A3Y7-01 5 162910234 162910234 T C HMMR Intron 0.35 TCGA-EB-A3Y7-01 5 167937622 167937622 C T RARS Silent p.R461R 0.24 TCGA-EB-A3Y7-01 5 168098448 168098448 G C SLIT3 Silent p.G1294G 0.26 TCGA-EB-A3Y7-01 5 170160844 170160844 T C KCNIP1 Missense_Mutation p.M193T 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-EB-A3Y7-01 5 170346514 170346514 C T RANBP17 Missense_Mutation p.P391S 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A3Y7-01 5 170346515 170346515 C T RANBP17 Missense_Mutation p.P391L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 5 176721376 176721376 T G NSD1 Missense_Mutation p.V2336G 0.19 deleterious_low_confidence(0) benign(0.075) TCGA-EB-A3Y7-01 5 179565103 179565103 G A RASGEF1C 5'UTR 0.39 TCGA-EB-A3Y7-01 5 179669645 179669645 G A MAPK9 Missense_Mutation p.P267S 0.24 tolerated(0.07) benign(0.018) TCGA-EB-A3Y7-01 5 180432828 180432828 G A BTNL3 Missense_Mutation p.E453K 0.30 tolerated(0.2) benign(0.002) TCGA-EB-A3Y7-01 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.27 tolerated(0.31) possibly_damaging(0.72) TCGA-EB-A3Y7-01 5 31317817 31317817 T C CDH6 Silent p.Y556Y 0.31 TCGA-EB-A3Y7-01 5 37195974 37195974 G A C5orf42 Missense_Mutation p.S1266F 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A3Y7-01 5 40936581 40936581 G A C7 Missense_Mutation p.G141E 0.27 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y7-01 5 41004894 41004894 T G MROH2B Silent p.A1331A 0.25 TCGA-EB-A3Y7-01 5 41039606 41039606 A G MROH2B Silent p.L669L 0.18 TCGA-EB-A3Y7-01 5 41047823 41047823 C T MROH2B Silent p.Q576Q 0.44 TCGA-EB-A3Y7-01 5 41153929 41153929 G C C6 Missense_Mutation p.S758C 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-EB-A3Y7-01 5 42719119 42719119 G A GHR Missense_Mutation p.G504S 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-EB-A3Y7-01 5 5146384 5146384 A T ADAMTS16 Missense_Mutation p.H106L 0.31 deleterious(0.02) benign(0.008) TCGA-EB-A3Y7-01 5 52371081 52371081 T A ITGA2 Missense_Mutation p.N924K 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 5 56777365 56777365 G A ACTBL2 3'UTR 0.24 TCGA-EB-A3Y7-01 5 6749729 6749729 A C PAPD7 Missense_Mutation p.K299T 0.31 tolerated(0.43) benign(0.297) TCGA-EB-A3Y7-01 5 67591043 67591043 G C PIK3R1 Missense_Mutation p.E546Q 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A3Y7-01 5 75954316 75954316 C T IQGAP2 Missense_Mutation p.R785C 0.21 tolerated(0.07) probably_damaging(0.932) TCGA-EB-A3Y7-01 5 79027299 79027299 C T CMYA5 Missense_Mutation p.S904L 0.21 possibly_damaging(0.587) TCGA-EB-A3Y7-01 5 79034227 79034227 A G CMYA5 Silent p.E3213E 0.26 TCGA-EB-A3Y7-01 5 82816125 82816125 G A VCAN Missense_Mutation p.G667E 0.32 tolerated(0.21) benign(0.059) TCGA-EB-A3Y7-01 5 94852863 94852863 G A TTC37 Missense_Mutation p.H760Y 0.35 tolerated(0.05) benign(0.222) TCGA-EB-A3Y7-01 5 95224520 95224520 G A ELL2 3'UTR 0.35 TCGA-EB-A3Y7-01 5 96219594 96219594 G A ERAP2 Missense_Mutation p.R225Q 0.27 tolerated(0.08) probably_damaging(0.957) TCGA-EB-A3Y7-01 5 96224935 96224935 C T ERAP2 Missense_Mutation p.A299V 0.35 deleterious(0.01) possibly_damaging(0.772) TCGA-EB-A3Y7-01 6 100395765 100395765 G A MCHR2 Missense_Mutation p.L89F 0.20 deleterious(0.05) probably_damaging(1) TCGA-EB-A3Y7-01 6 10924775 10924775 G A SYCP2L Missense_Mutation p.M373I 0.17 tolerated(1) benign(0) TCGA-EB-A3Y7-01 6 111543493 111543493 C T SLC16A10 3'UTR 0.31 TCGA-EB-A3Y7-01 6 117113413 117113413 G A GPRC6A Silent p.T891T 0.07 TCGA-EB-A3Y7-01 6 117700239 117700239 A T ROS1 Silent p.A860A 0.18 TCGA-EB-A3Y7-01 6 128135054 128135054 G A THEMIS Silent p.I244I 0.39 TCGA-EB-A3Y7-01 6 128505828 128505828 C T PTPRK Missense_Mutation p.G304E 0.39 deleterious(0) probably_damaging(0.994) TCGA-EB-A3Y7-01 6 131902504 131902504 G A ARG1 Missense_Mutation p.E159K 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-EB-A3Y7-01 6 136704887 136704887 G A MAP7 Missense_Mutation p.L209F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 6 138550983 138550983 C T KIAA1244 Silent p.I138I 0.13 TCGA-EB-A3Y7-01 6 158296126 158296126 C T SNX9 Missense_Mutation p.S73L 0.40 deleterious(0.05) benign(0.354) TCGA-EB-A3Y7-01 6 159636160 159636160 G A FNDC1 Missense_Mutation p.R215Q 0.31 tolerated(0.12) unknown(0) TCGA-EB-A3Y7-01 6 159687132 159687132 G A FNDC1 Nonsense_Mutation p.W1767* 0.34 TCGA-EB-A3Y7-01 6 160328341 160328341 G A MAS1 Silent p.T118T 0.42 TCGA-EB-A3Y7-01 6 160328644 160328644 G A MAS1 Nonsense_Mutation p.W219* 0.42 TCGA-EB-A3Y7-01 6 160829790 160829790 G A SLC22A3 Missense_Mutation p.E232K 0.41 deleterious(0) probably_damaging(0.984) TCGA-EB-A3Y7-01 6 167550790 167550790 C T CCR6 Missense_Mutation p.R358W 0.07 deleterious(0) possibly_damaging(0.841) TCGA-EB-A3Y7-01 6 24447179 24447179 C T GPLD1 Nonsense_Mutation p.W569* 0.21 TCGA-EB-A3Y7-01 6 25492194 25492194 C T LRRC16A Missense_Mutation p.R388C 0.25 deleterious(0) possibly_damaging(0.841) TCGA-EB-A3Y7-01 6 26158830 26158830 C T HIST1H2BD Intron 0.29 TCGA-EB-A3Y7-01 6 2678585 2678585 G A MYLK4 Silent p.F303F 0.22 TCGA-EB-A3Y7-01 6 28403833 28403833 C T ZSCAN23 Missense_Mutation p.E71K 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-EB-A3Y7-01 6 28542523 28542523 C T SCAND3 Missense_Mutation p.M653I 0.23 tolerated_low_confidence(0.24) benign(0.002) TCGA-EB-A3Y7-01 6 28554272 28554272 C T SCAND3 Missense_Mutation p.E75K 0.32 tolerated_low_confidence(0.17) benign(0.014) TCGA-EB-A3Y7-01 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.21 deleterious(0.02) benign(0.022) TCGA-EB-A3Y7-01 6 29274616 29274616 C T OR14J1 Silent p.D50D 0.25 TCGA-EB-A3Y7-01 6 29275427 29275427 C G OR14J1 Missense_Mutation p.L321V 0.19 tolerated_low_confidence(0.15) benign(0.003) TCGA-EB-A3Y7-01 6 29430323 29430323 G A OR2H1 Silent p.Q259Q 0.28 TCGA-EB-A3Y7-01 6 30080485 30080485 T G TRIM31 Missense_Mutation p.H33P 0.25 deleterious(0) probably_damaging(0.996) TCGA-EB-A3Y7-01 6 30867720 30867720 A T DDR1 3'UTR 0.34 TCGA-EB-A3Y7-01 6 31584651 31584651 A G AIF1 Missense_Mutation p.K140E 0.25 tolerated(0.24) probably_damaging(0.91) TCGA-EB-A3Y7-01 6 31686818 31686818 G A LY6G6C 3'UTR 0.25 TCGA-EB-A3Y7-01 6 31695997 31695997 G A DDAH2 Missense_Mutation p.R182C 0.17 deleterious(0.01) possibly_damaging(0.827) TCGA-EB-A3Y7-01 6 31963740 31963740 C T C4A Missense_Mutation p.A1080V 0.13 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 6 32026057 32026057 G C TNXB Missense_Mutation p.P2535A 0.25 benign(0.356) TCGA-EB-A3Y7-01 6 32030173 32030173 G A TNXB Missense_Mutation p.T2310I 0.39 probably_damaging(0.994) TCGA-EB-A3Y7-01 6 32039860 32039860 G A TNXB Missense_Mutation p.P1633S 0.27 probably_damaging(0.941) TCGA-EB-A3Y7-01 6 32818256 32818256 G A TAP1 Silent p.S423S 0.27 TCGA-EB-A3Y7-01 6 32820001 32820001 G A TAP1 Silent p.F303F 0.31 TCGA-EB-A3Y7-01 6 33152008 33152008 C T COL11A2 Intron 0.24 TCGA-EB-A3Y7-01 6 33648215 33648215 C T ITPR3 Missense_Mutation p.T1445I 0.14 tolerated(0.19) benign(0.005) TCGA-EB-A3Y7-01 6 35928662 35928662 G A SLC26A8 Silent p.I532I 0.26 TCGA-EB-A3Y7-01 6 40359793 40359793 C T LRFN2 Silent p.T753T 0.28 TCGA-EB-A3Y7-01 6 42796397 42796397 C T GLTSCR1L Missense_Mutation p.S109F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 6 43097974 43097974 C T PTK7 Silent p.T167T 0.20 TCGA-EB-A3Y7-01 6 43250705 43250705 G A TTBK1 Missense_Mutation p.E743K 0.36 benign(0.048) TCGA-EB-A3Y7-01 6 43308569 43308569 C T ZNF318 Missense_Mutation p.E1152K 0.19 probably_damaging(0.998) TCGA-EB-A3Y7-01 6 43589882 43589882 T G GTPBP2 Missense_Mutation p.E497A 0.28 tolerated(0.37) benign(0.114) TCGA-EB-A3Y7-01 6 44143993 44143993 C T CAPN11 Missense_Mutation p.H307Y 0.23 tolerated(0.46) benign(0.008) TCGA-EB-A3Y7-01 6 44279970 44279970 G A AARS2 Missense_Mutation p.P92S 0.17 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 6 46108006 46108006 A G ENPP4 Missense_Mutation p.N229S 0.37 tolerated(0.74) benign(0.004) TCGA-EB-A3Y7-01 6 46977613 46977613 G A GPR110 Silent p.L520L 0.31 TCGA-EB-A3Y7-01 6 49703304 49703304 C T CRISP3 Missense_Mutation p.E87K 0.34 tolerated(0.18) benign(0.005) TCGA-EB-A3Y7-01 6 51913400 51913400 C T PKHD1 Missense_Mutation p.G766E 0.27 tolerated(0.19) benign(0.049) TCGA-EB-A3Y7-01 6 51934282 51934282 C T PKHD1 Missense_Mutation p.D251N 0.25 deleterious(0) benign(0.159) TCGA-EB-A3Y7-01 6 56351925 56351925 G A DST Silent p.T4385T 0.28 TCGA-EB-A3Y7-01 6 69349230 69349230 C T BAI3 Silent p.P221P 0.30 TCGA-EB-A3Y7-01 6 72967929 72967929 C T RIMS1 Missense_Mutation p.R958C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 6 73100385 73100385 G A RIMS1 Silent p.Q1484Q 0.26 TCGA-EB-A3Y7-01 6 73110325 73110325 C T RIMS1 Missense_Mutation p.S1663L 0.06 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 6 74079088 74079088 G A OOEP Missense_Mutation p.P71S 0.48 tolerated(0.23) probably_damaging(0.947) TCGA-EB-A3Y7-01 6 76419325 76419325 C T SENP6 Silent p.F933F 0.27 TCGA-EB-A3Y7-01 6 7880648 7880648 G A BMP6 3'UTR 0.35 TCGA-EB-A3Y7-01 6 8420999 8420999 A G SLC35B3 Missense_Mutation p.F213L 0.20 deleterious(0) probably_damaging(0.988) TCGA-EB-A3Y7-01 6 87968115 87968115 C T ZNF292 Missense_Mutation p.P1590S 0.33 tolerated_low_confidence(1) benign(0.002) TCGA-EB-A3Y7-01 6 88854820 88854820 G A CNR1 Silent p.F58F 0.37 TCGA-EB-A3Y7-01 6 90455232 90455232 C T MDN1 Missense_Mutation p.E1340K 0.24 benign(0.01) TCGA-EB-A3Y7-01 6 90604581 90604581 G A GJA10 Missense_Mutation p.D132N 0.36 tolerated(0.05) benign(0.013) TCGA-EB-A3Y7-01 6 90660867 90660867 G A BACH2 Missense_Mutation p.P320S 0.26 tolerated_low_confidence(0.2) benign(0.025) TCGA-EB-A3Y7-01 7 100218594 100218594 G A TFR2 Silent p.S764S 0.29 TCGA-EB-A3Y7-01 7 100385680 100385680 G A ZAN Silent p.R2382R 0.39 TCGA-EB-A3Y7-01 7 100552455 100552455 C T MUC3A Silent p.S402S 0.18 TCGA-EB-A3Y7-01 7 100675097 100675097 G A MUC17 Missense_Mutation p.E134K 0.30 benign(0.004) TCGA-EB-A3Y7-01 7 102574462 102574462 G A LRRC17 Silent p.R34R 0.34 TCGA-EB-A3Y7-01 7 102738975 102738975 T G ARMC10 Missense_Mutation p.V336G 0.13 deleterious(0) possibly_damaging(0.833) TCGA-EB-A3Y7-01 7 103202337 103202337 C T RELN Silent p.A1758A 0.19 TCGA-EB-A3Y7-01 7 113522183 113522183 C T PPP1R3A Missense_Mutation p.D293N 0.21 deleterious(0.02) probably_damaging(0.917) TCGA-EB-A3Y7-01 7 116528214 116528214 C T CAPZA2 Missense_Mutation p.P25S 0.17 deleterious(0.04) probably_damaging(0.989) TCGA-EB-A3Y7-01 7 117431261 117431261 G A CTTNBP2 Silent p.A663A 0.41 TCGA-EB-A3Y7-01 7 119915211 119915211 C T KCND2 Silent p.F175F 0.36 TCGA-EB-A3Y7-01 7 120935521 120935521 T G CPED1 Missense_Mutation p.Y966D 0.21 tolerated(0.21) benign(0.062) TCGA-EB-A3Y7-01 7 121651265 121651265 A G PTPRZ1 Missense_Mutation p.E722G 0.23 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-EB-A3Y7-01 7 122337852 122337852 G A RNF133 Missense_Mutation p.P374L 0.27 deleterious(0) possibly_damaging(0.541) TCGA-EB-A3Y7-01 7 122338483 122338483 A T RNF133 Missense_Mutation p.F164I 0.20 deleterious(0.03) benign(0.037) TCGA-EB-A3Y7-01 7 122635376 122635376 T G TAS2R16 Missense_Mutation p.I105L 0.32 deleterious(0.01) benign(0.023) TCGA-EB-A3Y7-01 7 122787340 122787340 G A SLC13A1 Nonsense_Mutation p.R229* 0.32 TCGA-EB-A3Y7-01 7 123152398 123152398 C A IQUB Intron 0.34 TCGA-EB-A3Y7-01 7 129120669 129120669 C T STRIP2 Missense_Mutation p.S663F 0.19 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 7 129946646 129946646 G A CPA4 Missense_Mutation p.R204K 0.30 tolerated(1) benign(0) TCGA-EB-A3Y7-01 7 129946647 129946647 G A CPA4 Silent p.R204R 0.31 TCGA-EB-A3Y7-01 7 130370160 130370160 C T TSGA13 5'UTR 0.24 TCGA-EB-A3Y7-01 7 131196054 131196054 G A PODXL Missense_Mutation p.A80V 0.41 deleterious_low_confidence(0.02) benign(0.049) TCGA-EB-A3Y7-01 7 134896289 134896289 G A WDR91 5'Flank 0.16 TCGA-EB-A3Y7-01 7 136700863 136700863 C T CHRM2 Silent p.I417I 0.29 TCGA-EB-A3Y7-01 7 137761296 137761296 C T AKR1D1 Missense_Mutation p.P11L 0.17 tolerated(0.12) benign(0.044) TCGA-EB-A3Y7-01 7 137798510 137798510 A T AKR1D1 Missense_Mutation p.E310D 0.33 tolerated(0.51) benign(0) TCGA-EB-A3Y7-01 7 138313099 138313099 G A SVOPL Silent p.I291I 0.31 TCGA-EB-A3Y7-01 7 138764404 138764404 A T ZC3HAV1 Missense_Mutation p.F428Y 0.30 tolerated(0.07) benign(0.096) TCGA-EB-A3Y7-01 7 139168259 139168259 G A KLRG2 Missense_Mutation p.P44S 0.24 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-EB-A3Y7-01 7 139838968 139838968 G A KDM7A Missense_Mutation p.H73Y 0.32 tolerated(0.09) benign(0.026) TCGA-EB-A3Y7-01 7 142000804 142000804 C T TRBV2 5'UTR 0.28 TCGA-EB-A3Y7-01 7 142001122 142001122 G A TRBV2 Missense_Mutation p.E39K 0.38 TCGA-EB-A3Y7-01 7 142231995 142231995 C T TRBV10-1 Missense_Mutation p.A10T 0.35 tolerated(0.16) benign(0.014) TCGA-EB-A3Y7-01 7 142364205 142364205 G A TRBV24-1 5'UTR 0.25 TCGA-EB-A3Y7-01 7 142626175 142626175 C T TRPV5 Silent p.E176E 0.26 TCGA-EB-A3Y7-01 7 142636625 142636625 G A C7orf34 5'UTR 0.28 TCGA-EB-A3Y7-01 7 142650914 142650914 C T KEL Missense_Mutation p.E352K 0.25 tolerated(0.55) benign(0.012) TCGA-EB-A3Y7-01 7 142723760 142723760 A C OR9A2 Missense_Mutation p.W154G 0.27 tolerated(0.43) probably_damaging(1) TCGA-EB-A3Y7-01 7 142724016 142724016 C T OR9A2 Silent p.L68L 0.26 TCGA-EB-A3Y7-01 7 143175682 143175682 C T TAS2R41 Silent p.F239F 0.32 TCGA-EB-A3Y7-01 7 143421478 143421478 C T FAM115C Silent p.I731I 0.24 TCGA-EB-A3Y7-01 7 143453312 143453312 C T CTAGE6 Silent p.R480R 0.16 TCGA-EB-A3Y7-01 7 143453313 143453313 C T CTAGE6 Missense_Mutation p.R480K 0.17 tolerated(0.39) benign(0.073) TCGA-EB-A3Y7-01 7 143747769 143747769 T A OR2A5 Missense_Mutation p.I92N 0.34 deleterious(0) probably_damaging(0.968) TCGA-EB-A3Y7-01 7 143771310 143771310 G A OR2A25 5'UTR 0.22 TCGA-EB-A3Y7-01 7 143793046 143793046 G A OR2A12 Silent p.P282P 0.28 TCGA-EB-A3Y7-01 7 143793126 143793126 C T OR2A12 Missense_Mutation p.S309L 0.28 deleterious(0.04) benign(0.002) TCGA-EB-A3Y7-01 7 143806678 143806678 G A OR2A2 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.01) benign(0.38) TCGA-EB-A3Y7-01 7 14758216 14758216 G A DGKB Silent p.V139V 0.36 TCGA-EB-A3Y7-01 7 149497419 149497419 C T SSPO RNA 0.44 TCGA-EB-A3Y7-01 7 149508081 149508081 C T SSPO RNA 0.26 TCGA-EB-A3Y7-01 7 150034168 150034168 C T LRRC61 Missense_Mutation p.S73F 0.34 deleterious(0.01) possibly_damaging(0.678) TCGA-EB-A3Y7-01 7 150094978 150094978 G T ZNF775 Missense_Mutation p.G470V 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 7 1513255 1513255 G A INTS1 Silent p.T1968T 0.32 TCGA-EB-A3Y7-01 7 151873396 151873396 G A KMT2C Silent p.L3048L 0.33 TCGA-EB-A3Y7-01 7 157985162 157985162 C T PTPRN2 Missense_Mutation p.E136K 0.28 tolerated(0.2) benign(0.004) TCGA-EB-A3Y7-01 7 195722 195722 C T FAM20C Silent p.I258I 0.17 TCGA-EB-A3Y7-01 7 21760446 21760446 C T DNAH11 Missense_Mutation p.A2420V 0.19 possibly_damaging(0.89) TCGA-EB-A3Y7-01 7 23809328 23809328 G A STK31 Missense_Mutation p.E556K 0.29 tolerated(0.61) benign(0.011) TCGA-EB-A3Y7-01 7 24718782 24718782 G A MPP6 Missense_Mutation p.D383N 0.18 tolerated(0.46) benign(0.06) TCGA-EB-A3Y7-01 7 24727318 24727318 G A MPP6 3'UTR 0.23 TCGA-EB-A3Y7-01 7 27147736 27147736 T C HOXA3 Missense_Mutation p.N377S 0.17 tolerated(0.88) benign(0.142) TCGA-EB-A3Y7-01 7 28547253 28547253 G A CREB5 Silent p.T63T 0.24 TCGA-EB-A3Y7-01 7 31142890 31142890 C T ADCYAP1R1 Silent p.F390F 0.31 TCGA-EB-A3Y7-01 7 31378734 31378734 C T NEUROD6 Missense_Mutation p.R50K 0.27 tolerated(0.93) benign(0) TCGA-EB-A3Y7-01 7 37382352 37382352 C T ELMO1 5'UTR 0.29 TCGA-EB-A3Y7-01 7 44578700 44578700 G A NPC1L1 Silent p.F432F 0.31 TCGA-EB-A3Y7-01 7 48314737 48314737 G A ABCA13 Nonsense_Mutation p.W1825* 0.17 TCGA-EB-A3Y7-01 7 56007100 56007100 A G ZNF713 Missense_Mutation p.N232D 0.16 deleterious(0.02) benign(0.054) TCGA-EB-A3Y7-01 7 63726928 63726928 G A ZNF679 Missense_Mutation p.S306N 0.15 tolerated(1) possibly_damaging(0.587) TCGA-EB-A3Y7-01 7 63982018 63982018 G A ZNF680 Missense_Mutation p.H372Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 7 69583186 69583186 C T AUTS2 Silent p.F197F 0.25 TCGA-EB-A3Y7-01 7 76062950 76062950 C T ZP3 Silent p.I233I 0.25 TCGA-EB-A3Y7-01 7 81600076 81600076 G A CACNA2D1 Intron 0.33 TCGA-EB-A3Y7-01 7 82453568 82453568 G A PCLO Silent p.F4860F 0.28 TCGA-EB-A3Y7-01 7 82545253 82545253 C T PCLO Missense_Mutation p.E4017K 0.26 unknown(0) TCGA-EB-A3Y7-01 7 82579150 82579150 G A PCLO Missense_Mutation p.S3585F 0.36 unknown(0) TCGA-EB-A3Y7-01 7 82582947 82582947 T A PCLO Missense_Mutation p.K2441I 0.19 unknown(0) TCGA-EB-A3Y7-01 7 82595743 82595743 C T PCLO Missense_Mutation p.D1121N 0.20 unknown(0) TCGA-EB-A3Y7-01 7 83590727 83590727 C T SEMA3A Missense_Mutation p.R759K 0.23 tolerated(0.13) probably_damaging(0.986) TCGA-EB-A3Y7-01 7 83764183 83764183 C T SEMA3A Missense_Mutation p.R66Q 0.37 tolerated(0.21) possibly_damaging(0.751) TCGA-EB-A3Y7-01 7 86416204 86416204 A T GRM3 Nonsense_Mutation p.K366* 0.19 TCGA-EB-A3Y7-01 7 8791150 8791150 C T NXPH1 Silent p.S189S 0.17 TCGA-EB-A3Y7-01 7 87911886 87911886 G A STEAP4 Intron 0.32 TCGA-EB-A3Y7-01 7 88964781 88964781 G A ZNF804B Missense_Mutation p.D829N 0.26 tolerated(0.19) possibly_damaging(0.743) TCGA-EB-A3Y7-01 7 88965476 88965476 A G ZNF804B Silent p.Q1060Q 0.29 TCGA-EB-A3Y7-01 7 89983834 89983834 C T GTPBP10 Missense_Mutation p.S97L 0.38 tolerated(0.05) benign(0.385) TCGA-EB-A3Y7-01 7 91730267 91730267 C T AKAP9 Missense_Mutation p.S3665F 0.29 probably_damaging(0.943) TCGA-EB-A3Y7-01 7 92733748 92733748 G A SAMD9 Missense_Mutation p.P555S 0.32 deleterious(0) probably_damaging(0.989) TCGA-EB-A3Y7-01 7 92940548 92940548 T C CCDC132 Silent p.L607L 0.33 TCGA-EB-A3Y7-01 7 94059789 94059789 G A COL1A2 3'UTR 0.37 TCGA-EB-A3Y7-01 7 98497042 98497042 C T TRRAP Intron 0.25 TCGA-EB-A3Y7-01 7 99459255 99459255 C T CYP3A43 Missense_Mutation p.A349V 0.30 tolerated(0.15) benign(0.081) TCGA-EB-A3Y7-01 8 101563076 101563076 G A ANKRD46 Intron 0.25 TCGA-EB-A3Y7-01 8 10387043 10387043 G A PRSS55 Missense_Mutation p.G61R 0.30 tolerated(0.5) benign(0.017) TCGA-EB-A3Y7-01 8 10469304 10469304 G A RP1L1 Silent p.S768S 0.25 TCGA-EB-A3Y7-01 8 10470176 10470176 C T RP1L1 Missense_Mutation p.D478N 0.35 possibly_damaging(0.621) TCGA-EB-A3Y7-01 8 10480109 10480109 C T RP1L1 Silent p.G201G 0.23 TCGA-EB-A3Y7-01 8 108334151 108334151 G A ANGPT1 Missense_Mutation p.L261F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A3Y7-01 8 110477334 110477334 C T PKHD1L1 Missense_Mutation p.S2758F 0.21 deleterious(0) probably_damaging(0.952) TCGA-EB-A3Y7-01 8 113323281 113323281 C T CSMD3 Missense_Mutation p.G2604E 0.30 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 8 113347592 113347592 G A CSMD3 Silent p.F2377F 0.18 TCGA-EB-A3Y7-01 8 11412914 11412914 G A BLK Silent p.Q231Q 0.24 TCGA-EB-A3Y7-01 8 11420586 11420586 G A BLK Missense_Mutation p.E427K 0.26 deleterious(0.03) probably_damaging(1) TCGA-EB-A3Y7-01 8 120118089 120118089 G A COLEC10 Missense_Mutation p.E165K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 8 120118434 120118434 C T COLEC10 3'UTR 0.14 TCGA-EB-A3Y7-01 8 120602772 120602772 G A ENPP2 Nonsense_Mutation p.R446* 0.20 TCGA-EB-A3Y7-01 8 124265909 124265909 G A ZHX1 Missense_Mutation p.P760S 0.27 tolerated(0.22) benign(0.293) TCGA-EB-A3Y7-01 8 124988293 124988293 C T FER1L6 Missense_Mutation p.P280L 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 8 133044195 133044195 C T OC90 Missense_Mutation p.E322K 0.21 deleterious(0) possibly_damaging(0.801) TCGA-EB-A3Y7-01 8 133053771 133053771 C T OC90 Splice_Site p.X115_splice 0.21 TCGA-EB-A3Y7-01 8 133973262 133973262 C T TG Missense_Mutation p.P1804L 0.25 tolerated(0.41) benign(0.004) TCGA-EB-A3Y7-01 8 134239680 134239680 C T WISP1 Silent p.Y277Y 0.21 TCGA-EB-A3Y7-01 8 135614806 135614806 C T ZFAT Missense_Mutation p.E386K 0.36 deleterious(0.03) possibly_damaging(0.63) TCGA-EB-A3Y7-01 8 139165175 139165175 C A FAM135B Nonsense_Mutation p.E515* 0.35 TCGA-EB-A3Y7-01 8 13948082 13948082 G A SGCZ Missense_Mutation p.S270L 0.22 tolerated(0.23) benign(0.03) TCGA-EB-A3Y7-01 8 142176407 142176407 G A DENND3 Missense_Mutation p.D478N 0.25 deleterious(0.03) probably_damaging(0.945) TCGA-EB-A3Y7-01 8 142367885 142367885 C T GPR20 Missense_Mutation p.G47S 0.22 tolerated(0.65) benign(0.001) TCGA-EB-A3Y7-01 8 142487537 142487537 G A MROH5 3'UTR 0.31 TCGA-EB-A3Y7-01 8 142500285 142500285 G A MROH5 3'Flank 0.40 TCGA-EB-A3Y7-01 8 143310837 143310837 G A TSNARE1 3'UTR 0.18 TCGA-EB-A3Y7-01 8 144522284 144522284 G A ZC3H3 Silent p.S914S 0.36 TCGA-EB-A3Y7-01 8 144672217 144672217 G A EEF1D Missense_Mutation p.T12I 0.30 deleterious(0.01) possibly_damaging(0.646) TCGA-EB-A3Y7-01 8 17133945 17133945 C T VPS37A Missense_Mutation p.P228S 0.25 tolerated(0.1) benign(0.403) TCGA-EB-A3Y7-01 8 17157233 17157233 T A MTMR7 3'UTR 0.31 TCGA-EB-A3Y7-01 8 17169017 17169017 C T MTMR7 Intron 0.25 TCGA-EB-A3Y7-01 8 18258350 18258350 C T NAT2 Silent p.L279L 0.25 TCGA-EB-A3Y7-01 8 21846536 21846536 G A XPO7 Missense_Mutation p.G604S 0.14 tolerated(0.3) benign(0.061) TCGA-EB-A3Y7-01 8 24242034 24242034 C T ADAMDEC1 Missense_Mutation p.S6F 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A3Y7-01 8 24324357 24324357 G A ADAM7 Silent p.V145V 0.18 TCGA-EB-A3Y7-01 8 27516404 27516404 G T SCARA3 Silent p.R239R 0.26 TCGA-EB-A3Y7-01 8 27917999 27917999 C T NUGGC Silent p.R347R 0.26 TCGA-EB-A3Y7-01 8 29195942 29195942 G A DUSP4 Missense_Mutation p.A219V 0.22 tolerated(0.19) benign(0.101) TCGA-EB-A3Y7-01 8 30695336 30695336 T A TEX15 Missense_Mutation p.N2439Y 0.23 tolerated(0.05) possibly_damaging(0.507) TCGA-EB-A3Y7-01 8 35402022 35402022 C T UNC5D Intron 0.21 TCGA-EB-A3Y7-01 8 38297836 38297836 G A FGFR1 Intron 0.31 TCGA-EB-A3Y7-01 8 38883394 38883394 G A ADAM9 Silent p.G329G 0.23 TCGA-EB-A3Y7-01 8 39613372 39613372 G A ADAM2 Missense_Mutation p.P558S 0.25 tolerated(0.51) benign(0.007) TCGA-EB-A3Y7-01 8 39785582 39785582 G A IDO1 Missense_Mutation p.E364K 0.16 tolerated(0.88) benign(0.002) TCGA-EB-A3Y7-01 8 41573349 41573349 G A ANK1 Missense_Mutation p.H508Y 0.20 deleterious(0) benign(0.037) TCGA-EB-A3Y7-01 8 41753881 41753881 T C ANK1 Missense_Mutation p.K40E 0.17 tolerated(0.08) benign(0.205) TCGA-EB-A3Y7-01 8 41791982 41791982 G A KAT6A Silent p.A1252A 0.30 TCGA-EB-A3Y7-01 8 55537394 55537394 G A RP1 Missense_Mutation p.D318N 0.21 deleterious(0.03) possibly_damaging(0.572) TCGA-EB-A3Y7-01 8 55539434 55539434 G A RP1 Missense_Mutation p.D998N 0.25 tolerated(0.39) benign(0.016) TCGA-EB-A3Y7-01 8 55540487 55540487 G A RP1 Missense_Mutation p.E1349K 0.26 deleterious(0.04) benign(0.147) TCGA-EB-A3Y7-01 8 69699715 69699715 C T C8orf34 Missense_Mutation p.P498L 0.17 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EB-A3Y7-01 8 73480293 73480293 C T KCNB2 Silent p.L108L 0.30 TCGA-EB-A3Y7-01 8 73849751 73849751 G A KCNB2 Missense_Mutation p.E721K 0.24 tolerated_low_confidence(0.23) benign(0.044) TCGA-EB-A3Y7-01 8 75757656 75757656 C T PI15 Missense_Mutation p.H189Y 0.22 tolerated(0.09) possibly_damaging(0.478) TCGA-EB-A3Y7-01 8 87392992 87392992 C T WWP1 Silent p.F36F 0.12 TCGA-EB-A3Y7-01 8 88885139 88885139 G A DCAF4L2 Missense_Mutation p.S354F 0.25 deleterious(0.04) probably_damaging(0.982) TCGA-EB-A3Y7-01 8 93029462 93029462 G A RUNX1T1 Missense_Mutation p.P84L 0.26 deleterious(0) probably_damaging(0.935) TCGA-EB-A3Y7-01 8 94770710 94770710 G A TMEM67 Splice_Site p.X105_splice 0.30 TCGA-EB-A3Y7-01 8 95272517 95272517 C T GEM Missense_Mutation p.G72E 0.33 tolerated(0.26) benign(0) TCGA-EB-A3Y7-01 8 95680357 95680357 G A ESRP1 Missense_Mutation p.G371E 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 8 98703334 98703334 G A MTDH Nonsense_Mutation p.W322* 0.43 TCGA-EB-A3Y7-01 9 101816876 101816876 G A COL15A1 Missense_Mutation p.G990E 0.60 deleterious(0.05) probably_damaging(0.998) TCGA-EB-A3Y7-01 9 101829200 101829200 G A COL15A1 Missense_Mutation p.D1230N 0.25 tolerated(0.11) benign(0.407) TCGA-EB-A3Y7-01 9 113169469 113169469 C T SVEP1 Missense_Mutation p.G2804E 0.55 probably_damaging(1) TCGA-EB-A3Y7-01 9 113212435 113212435 C T SVEP1 Missense_Mutation p.G1336E 0.49 probably_damaging(1) TCGA-EB-A3Y7-01 9 113704206 113704206 G A LPAR1 Silent p.F96F 0.22 TCGA-EB-A3Y7-01 9 125391789 125391789 G A OR1B1 Missense_Mutation p.S9L 0.58 deleterious(0) possibly_damaging(0.761) TCGA-EB-A3Y7-01 9 131271342 131271342 C T GLE1 Missense_Mutation p.S96F 0.68 deleterious(0) benign(0.013) TCGA-EB-A3Y7-01 9 132590527 132590527 G A C9orf78 Silent p.S261S 0.59 TCGA-EB-A3Y7-01 9 134343098 134343098 C T PRRC2B Silent p.S623S 0.60 TCGA-EB-A3Y7-01 9 139273212 139273212 G A SNAPC4 Missense_Mutation p.L1023F 0.62 tolerated(0.08) benign(0.089) TCGA-EB-A3Y7-01 9 139297304 139297304 A G SDCCAG3 Missense_Mutation p.V415A 0.14 deleterious(0.01) probably_damaging(0.924) TCGA-EB-A3Y7-01 9 140076234 140076234 A G ANAPC2 Missense_Mutation p.L456P 0.50 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 9 14812864 14812864 C T FREM1 Missense_Mutation p.D947N 0.26 tolerated(0.08) benign(0.036) TCGA-EB-A3Y7-01 9 14812989 14812989 C T FREM1 Missense_Mutation p.G905E 0.28 tolerated(1) benign(0.008) TCGA-EB-A3Y7-01 9 16436535 16436535 G A BNC2 Missense_Mutation p.P553S 0.25 tolerated(0.5) benign(0.113) TCGA-EB-A3Y7-01 9 17464579 17464579 T C CNTLN Silent p.S1163S 0.43 TCGA-EB-A3Y7-01 9 21206580 21206580 T G IFNA10 Silent p.R173R 0.26 TCGA-EB-A3Y7-01 9 21350622 21350622 T G IFNA6 Missense_Mutation p.N89H 0.23 tolerated(0.26) benign(0.04) TCGA-EB-A3Y7-01 9 34996273 34996273 G C DNAJB5 Missense_Mutation p.G189R 0.19 deleterious(0) probably_damaging(0.962) TCGA-EB-A3Y7-01 9 36083473 36083473 A G RECK Missense_Mutation p.E184G 0.34 tolerated(0.05) benign(0.104) TCGA-EB-A3Y7-01 9 37302206 37302206 C T ZCCHC7 Missense_Mutation p.S211F 0.27 tolerated(0.24) benign(0) TCGA-EB-A3Y7-01 9 377135 377135 C T DOCK8 Silent p.L788L 0.25 TCGA-EB-A3Y7-01 9 37740892 37740892 C T FRMPD1 Intron 0.17 TCGA-EB-A3Y7-01 9 39177374 39177374 T A CNTNAP3 Nonsense_Mutation p.K290* 0.30 TCGA-EB-A3Y7-01 9 5358200 5358200 A T PLGRKT 3'UTR 0.20 TCGA-EB-A3Y7-01 9 6330309 6330309 C T TPD52L3 3'UTR 0.23 TCGA-EB-A3Y7-01 9 73235165 73235165 C A TRPM3 Missense_Mutation p.M640I 0.54 deleterious(0.02) possibly_damaging(0.652) TCGA-EB-A3Y7-01 9 77457219 77457219 C T TRPM6 Missense_Mutation p.D65N 0.58 tolerated(0.11) benign(0.022) TCGA-EB-A3Y7-01 9 92020282 92020282 G A SEMA4D Silent p.I30I 0.55 TCGA-EB-A3Y7-01 X 101615563 101615563 C T NXF2B Missense_Mutation p.E614K 0.17 tolerated(0.22) benign(0.031) TCGA-EB-A3Y7-01 X 101620224 101620224 G A NXF2B Nonsense_Mutation p.R408* 0.16 TCGA-EB-A3Y7-01 X 103268141 103268141 C T H2BFWT Missense_Mutation p.G31E 0.30 tolerated(1) benign(0) TCGA-EB-A3Y7-01 X 106221338 106221338 G A MORC4 Missense_Mutation p.S343F 0.39 deleterious(0.02) benign(0.019) TCGA-EB-A3Y7-01 X 106844446 106844446 C T FRMPD3 Silent p.F1092F 0.42 TCGA-EB-A3Y7-01 X 110653301 110653301 C T DCX Missense_Mutation p.G190E 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 X 117079569 117079569 G A KLHL13 Intron 0.35 TCGA-EB-A3Y7-01 X 119389042 119389042 C T ZBTB33 Missense_Mutation p.S591F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A3Y7-01 X 125299173 125299173 G A DCAF12L2 Silent p.I245I 0.46 TCGA-EB-A3Y7-01 X 127185577 127185577 G A ACTRT1 Silent p.F203F 0.37 TCGA-EB-A3Y7-01 X 12938554 12938554 G A TLR8 Silent p.S465S 0.38 TCGA-EB-A3Y7-01 X 130419042 130419042 T G IGSF1 Intron 0.29 TCGA-EB-A3Y7-01 X 135960194 135960194 C T RBMX Missense_Mutation p.E90K 0.28 tolerated(0.14) benign(0.007) TCGA-EB-A3Y7-01 X 138669938 138669938 C T MCF2 Missense_Mutation p.R896K 0.29 tolerated(0.47) benign(0.001) TCGA-EB-A3Y7-01 X 140967032 140967032 G A MAGEC3 Silent p.G110G 0.67 TCGA-EB-A3Y7-01 X 150156416 150156416 T C HMGB3 3'UTR 0.42 TCGA-EB-A3Y7-01 X 151303134 151303134 C T MAGEA10 Missense_Mutation p.G320E 0.33 deleterious(0.05) benign(0.437) TCGA-EB-A3Y7-01 X 153761231 153761231 G A G6PD Missense_Mutation p.P356L 0.41 deleterious(0.01) possibly_damaging(0.513) TCGA-EB-A3Y7-01 X 153924272 153924272 G A GAB3 Missense_Mutation p.P484S 0.42 tolerated(0.21) benign(0.171) TCGA-EB-A3Y7-01 X 18230714 18230714 G A BEND2 Missense_Mutation p.P155S 0.28 tolerated(0.66) benign(0.046) TCGA-EB-A3Y7-01 X 20034380 20034380 G A MAP7D2 Silent p.A492A 0.25 TCGA-EB-A3Y7-01 X 22291877 22291877 C T ZNF645 Missense_Mutation p.P257S 0.36 tolerated(0.34) possibly_damaging(0.685) TCGA-EB-A3Y7-01 X 23410648 23410648 G T PTCHD1 Missense_Mutation p.G338V 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 X 24228681 24228681 C T ZFX Missense_Mutation p.R536C 0.44 deleterious(0) benign(0.089) TCGA-EB-A3Y7-01 X 2856249 2856249 G A ARSE Silent p.I392I 0.46 TCGA-EB-A3Y7-01 X 29973313 29973313 C T IL1RAPL1 Silent p.I489I 0.28 TCGA-EB-A3Y7-01 X 30236690 30236690 C T MAGEB2 Intron 0.32 TCGA-EB-A3Y7-01 X 37029348 37029348 A G FAM47C Silent p.E955E 0.47 TCGA-EB-A3Y7-01 X 37850431 37850431 C T CXorf27 Silent p.S113S 0.45 TCGA-EB-A3Y7-01 X 46360239 46360239 C T ZNF674 Missense_Mutation p.S262N 0.25 deleterious(0.04) benign(0.015) TCGA-EB-A3Y7-01 X 47774931 47774931 C T ZNF81 Missense_Mutation p.H296Y 0.34 tolerated(0.19) benign(0.404) TCGA-EB-A3Y7-01 X 52847217 52847217 G A XAGE5 Missense_Mutation p.E103K 0.30 deleterious(0.05) benign(0.01) TCGA-EB-A3Y7-01 X 56291766 56291766 T C KLF8 Missense_Mutation p.F79L 0.31 tolerated(0.46) benign(0.004) TCGA-EB-A3Y7-01 X 5811248 5811248 G A NLGN4X Silent p.F687F 0.35 TCGA-EB-A3Y7-01 X 5821147 5821147 C T NLGN4X Missense_Mutation p.M524I 0.43 tolerated(0.08) benign(0.182) TCGA-EB-A3Y7-01 X 5821525 5821525 G A NLGN4X Silent p.S398S 0.39 TCGA-EB-A3Y7-01 X 65412091 65412091 C T HEPH Missense_Mutation p.P449S 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A3Y7-01 X 66863104 66863104 G A AR Silent p.E541E 0.41 TCGA-EB-A3Y7-01 X 72667097 72667097 G A CDX4 Missense_Mutation p.G3E 0.45 tolerated(0.07) benign(0.005) TCGA-EB-A3Y7-01 X 73047574 73047574 A C XIST RNA 0.22 TCGA-EB-A3Y7-01 X 73963061 73963061 G A KIAA2022 Missense_Mutation p.S444F 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A3Y7-01 X 83129544 83129544 C T CYLC1 Missense_Mutation p.P610S 0.36 tolerated(0.15) possibly_damaging(0.767) TCGA-EB-A3Y7-01 X 83371295 83371295 C T RPS6KA6 Missense_Mutation p.G317E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A3Y7-01 X 84510685 84510685 C T ZNF711 Missense_Mutation p.S167L 0.36 tolerated(0.41) possibly_damaging(0.674) TCGA-EB-A3Y7-01 X 8565084 8565084 G A KAL1 Silent p.L178L 0.27 TCGA-EB-A3Y7-01 X 92965055 92965055 G A FAM133A Missense_Mutation p.E213K 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A41A-01 10 1038509 1038509 T C GTPBP4 Silent p.I43I 0.51 TCGA-EB-A41A-01 10 104572632 104572632 C T WBP1L Silent p.A212A 0.47 TCGA-EB-A41A-01 10 106118213 106118213 G A CCDC147 Missense_Mutation p.E42K 0.50 deleterious(0.03) possibly_damaging(0.767) TCGA-EB-A41A-01 10 106124613 106124613 G A CCDC147 Missense_Mutation p.R188Q 0.33 tolerated(0.3) benign(0.003) TCGA-EB-A41A-01 10 106899195 106899195 G A SORCS3 Missense_Mutation p.R418Q 0.41 tolerated(0.07) benign(0.025) TCGA-EB-A41A-01 10 107005301 107005301 C T SORCS3 Missense_Mutation p.P957L 0.34 deleterious(0) probably_damaging(0.978) TCGA-EB-A41A-01 10 1149760 1149760 C T WDR37 Silent p.L315L 0.53 TCGA-EB-A41A-01 10 115335708 115335708 G A HABP2 Silent p.G92G 0.39 TCGA-EB-A41A-01 10 115351989 115351989 G A NRAP Silent p.F1536F 0.39 TCGA-EB-A41A-01 10 116195988 116195988 C T ABLIM1 3'UTR 0.45 TCGA-EB-A41A-01 10 116307423 116307423 C T ABLIM1 Silent p.G262G 0.33 TCGA-EB-A41A-01 10 118386491 118386491 C T PNLIPRP2 Silent p.F149F 0.42 TCGA-EB-A41A-01 10 119100522 119100522 G A PDZD8 Missense_Mutation p.R322C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 10 12071456 12071456 G A UPF2 Missense_Mutation p.R145C 0.43 deleterious(0) possibly_damaging(0.838) TCGA-EB-A41A-01 10 123247617 123247617 C T FGFR2 Missense_Mutation p.R626Q 0.50 deleterious(0) possibly_damaging(0.763) TCGA-EB-A41A-01 10 123846469 123846469 C T TACC2 Missense_Mutation p.S1485F 0.42 possibly_damaging(0.851) TCGA-EB-A41A-01 10 123969945 123969945 G A TACC2 Missense_Mutation p.G2002D 0.32 probably_damaging(0.99) TCGA-EB-A41A-01 10 124457359 124457359 C T C10orf120 Missense_Mutation p.D300N 0.47 tolerated(0.21) benign(0.292) TCGA-EB-A41A-01 10 124907786 124907786 C T HMX2 5'UTR 0.50 TCGA-EB-A41A-01 10 126490351 126490351 G A FAM175B 5'Flank 0.49 TCGA-EB-A41A-01 10 127459124 127459124 C T MMP21 Nonsense_Mutation p.W339* 0.37 TCGA-EB-A41A-01 10 1279655 1279655 G A ADARB2 Silent p.P498P 0.47 TCGA-EB-A41A-01 10 128114656 128114656 G A C10orf90 Silent p.I655I 0.33 TCGA-EB-A41A-01 10 12940626 12940626 C T CCDC3 Silent p.K201K 0.37 TCGA-EB-A41A-01 10 131646724 131646724 C T EBF3 Missense_Mutation p.D345N 0.40 deleterious(0.03) probably_damaging(0.926) TCGA-EB-A41A-01 10 134219189 134219189 C T PWWP2B Silent p.P395P 0.42 TCGA-EB-A41A-01 10 135026287 135026287 C T KNDC1 Missense_Mutation p.T1435I 0.42 deleterious(0) possibly_damaging(0.603) TCGA-EB-A41A-01 10 135371687 135371687 G T SYCE1 Silent p.I101I 0.40 TCGA-EB-A41A-01 10 1405382 1405382 G A ADARB2 Silent p.F306F 0.55 TCGA-EB-A41A-01 10 15646290 15646290 C A ITGA8 Nonsense_Mutation p.E679* 0.36 TCGA-EB-A41A-01 10 15730005 15730005 C T ITGA8 Missense_Mutation p.E126K 0.41 tolerated(0.06) possibly_damaging(0.844) TCGA-EB-A41A-01 10 17156138 17156138 G A CUBN Silent p.S257S 0.24 TCGA-EB-A41A-01 10 17271484 17271484 G A VIM Silent p.A21A 0.44 TCGA-EB-A41A-01 10 18885165 18885165 G A NSUN6 Missense_Mutation p.T250I 0.40 deleterious(0.05) possibly_damaging(0.872) TCGA-EB-A41A-01 10 20500617 20500617 C T PLXDC2 Missense_Mutation p.R361C 0.45 deleterious(0) probably_damaging(0.984) TCGA-EB-A41A-01 10 25861749 25861749 G A GPR158 Silent p.G562G 0.38 TCGA-EB-A41A-01 10 25887005 25887005 C T GPR158 Missense_Mutation p.S817F 0.39 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 10 28233255 28233255 G A ARMC4 Missense_Mutation p.P547S 0.54 tolerated(0.18) benign(0.022) TCGA-EB-A41A-01 10 28250644 28250644 C T ARMC4 Silent p.R413R 0.33 TCGA-EB-A41A-01 10 28491182 28491182 G A MPP7 Missense_Mutation p.A19V 0.39 tolerated(0.08) benign(0.005) TCGA-EB-A41A-01 10 30318049 30318049 G A KIAA1462 Missense_Mutation p.P343L 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 10 31134230 31134230 G A ZNF438 Missense_Mutation p.S716F 0.45 tolerated(0.47) possibly_damaging(0.837) TCGA-EB-A41A-01 10 37430875 37430875 C T ANKRD30A Silent p.F294F 0.47 TCGA-EB-A41A-01 10 38242626 38242626 G A ZNF25 Missense_Mutation p.S100L 0.37 tolerated(0.21) benign(0.054) TCGA-EB-A41A-01 10 43015181 43015181 G A ZNF37BP RNA 0.39 TCGA-EB-A41A-01 10 43871510 43871510 C T FXYD4 Silent p.I81I 0.36 TCGA-EB-A41A-01 10 44873247 44873247 G A CXCL12 Missense_Mutation p.R125C 0.35 deleterious_low_confidence(0.03) probably_damaging(0.941) TCGA-EB-A41A-01 10 45602488 45602488 G A RSU1P2 RNA 0.46 TCGA-EB-A41A-01 10 45652564 45652564 G A RP11-445N18.7 RNA 0.29 TCGA-EB-A41A-01 10 45877933 45877933 G A ALOX5 Silent p.V51V 0.33 TCGA-EB-A41A-01 10 48371155 48371155 C T ZNF488 Missense_Mutation p.S208L 0.35 tolerated(1) probably_damaging(0.981) TCGA-EB-A41A-01 10 48413860 48413860 G A GDF2 Silent p.F336F 0.30 TCGA-EB-A41A-01 10 48429240 48429240 C T GDF10 Missense_Mutation p.D216N 0.52 tolerated(0.55) benign(0.037) TCGA-EB-A41A-01 10 50121667 50121667 G A LRRC18 Silent p.P178P 0.40 TCGA-EB-A41A-01 10 50122237 50122237 C T LRRC18 5'UTR 0.38 TCGA-EB-A41A-01 10 50227649 50227649 C T VSTM4 3'UTR 0.37 TCGA-EB-A41A-01 10 50966505 50966505 C T OGDHL Missense_Mutation p.G45D 0.41 tolerated(0.27) benign(0) TCGA-EB-A41A-01 10 52103748 52103748 C T SGMS1 Missense_Mutation p.D43N 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 10 54011359 54011359 A G PRKG1 Missense_Mutation p.N369S 0.29 tolerated(0.68) benign(0) TCGA-EB-A41A-01 10 54053691 54053691 G A PRKG1 3'UTR 0.42 TCGA-EB-A41A-01 10 54074829 54074829 G A DKK1 Silent p.G130G 0.44 TCGA-EB-A41A-01 10 55700623 55700623 C T PCDH15 Intron 0.37 TCGA-EB-A41A-01 10 55826612 55826612 C T PCDH15 Missense_Mutation p.D709N 0.34 deleterious(0.02) possibly_damaging(0.829) TCGA-EB-A41A-01 10 61443904 61443904 C T SLC16A9 Missense_Mutation p.G49E 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 10 61819602 61819602 T C ANK3 Intron 0.39 TCGA-EB-A41A-01 10 61829167 61829167 C T ANK3 Silent p.V3824V 0.42 TCGA-EB-A41A-01 10 61835899 61835899 C T ANK3 Silent p.P1580P 0.48 TCGA-EB-A41A-01 10 61840292 61840292 C T ANK3 Intron 0.13 TCGA-EB-A41A-01 10 61868730 61868730 G A ANK3 Missense_Mutation p.P1011S 0.33 possibly_damaging(0.766) TCGA-EB-A41A-01 10 61956379 61956379 C T ANK3 Missense_Mutation p.G565E 0.44 probably_damaging(1) TCGA-EB-A41A-01 10 61994510 61994510 C T ANK3 Missense_Mutation p.R278K 0.35 probably_damaging(0.996) TCGA-EB-A41A-01 10 6472834 6472834 G A PRKCQ Missense_Mutation p.R635W 0.49 tolerated(0.05) possibly_damaging(0.472) TCGA-EB-A41A-01 10 71391539 71391539 G A C10orf35 Missense_Mutation p.D14N 0.38 deleterious(0.05) benign(0.01) TCGA-EB-A41A-01 10 72509720 72509720 G T ADAMTS14 Silent p.L805L 0.50 TCGA-EB-A41A-01 10 73827435 73827435 G T SPOCK2 Missense_Mutation p.F215L 0.37 deleterious(0) possibly_damaging(0.787) TCGA-EB-A41A-01 10 75849098 75849098 T C VCL Silent p.D389D 0.38 TCGA-EB-A41A-01 10 7762851 7762851 G A ITIH2 Silent p.L221L 0.45 TCGA-EB-A41A-01 10 7762901 7762901 C T ITIH2 Missense_Mutation p.P238L 0.44 tolerated(0.48) benign(0.012) TCGA-EB-A41A-01 10 7791188 7791188 G A ITIH2 Missense_Mutation p.G911E 0.40 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 10 78868242 78868242 C T KCNMA1 Missense_Mutation p.R407K 0.51 tolerated(1) benign(0.063) TCGA-EB-A41A-01 10 79742503 79742503 G A POLR3A Missense_Mutation p.H1168Y 0.37 tolerated(1) benign(0.003) TCGA-EB-A41A-01 10 81680759 81680759 G A MBL1P RNA 0.58 TCGA-EB-A41A-01 10 82330031 82330031 G A SH2D4B Silent p.E102E 0.47 TCGA-EB-A41A-01 10 84738853 84738853 C T NRG3 Silent p.D520D 0.25 TCGA-EB-A41A-01 10 90045123 90045123 C T RNLS Silent p.K339K 0.40 TCGA-EB-A41A-01 10 90484384 90484384 C T LIPK Silent p.N28N 0.25 TCGA-EB-A41A-01 10 90492169 90492169 C T LIPK Intron 0.41 TCGA-EB-A41A-01 10 90537838 90537838 C T LIPN Missense_Mutation p.L346F 0.33 tolerated(0.21) probably_damaging(1) TCGA-EB-A41A-01 10 90733155 90733155 C T ACTA2 Intron 0.56 TCGA-EB-A41A-01 10 91200880 91200880 G A SLC16A12 Silent p.L145L 0.38 TCGA-EB-A41A-01 10 91203550 91203550 C T SLC16A12 Nonsense_Mutation p.W89* 0.46 TCGA-EB-A41A-01 10 91465176 91465176 C T KIF20B Missense_Mutation p.S42F 0.33 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 10 93390459 93390459 G A PPP1R3C Missense_Mutation p.S60L 0.41 deleterious(0) benign(0.083) TCGA-EB-A41A-01 10 95557177 95557177 G A LGI1 Missense_Mutation p.D431N 0.41 deleterious(0.02) probably_damaging(1) TCGA-EB-A41A-01 10 95720205 95720205 C T PIPSL RNA 0.43 TCGA-EB-A41A-01 10 95791303 95791303 G A PLCE1 Missense_Mutation p.G167E 0.40 tolerated_low_confidence(0.1) possibly_damaging(0.548) TCGA-EB-A41A-01 10 96535179 96535179 G A CYP2C19 Missense_Mutation p.E122K 0.47 tolerated(0.06) benign(0.094) TCGA-EB-A41A-01 10 96541613 96541613 C T CYP2C19 Silent p.F226F 0.33 TCGA-EB-A41A-01 10 96541701 96541701 G A CYP2C19 Missense_Mutation p.D256N 0.50 deleterious(0.03) benign(0.21) TCGA-EB-A41A-01 10 96798741 96798741 G A CYP2C8 Missense_Mutation p.P402S 0.38 tolerated(0.07) benign(0.128) TCGA-EB-A41A-01 10 96967144 96967144 G A C10orf129 Missense_Mutation p.G195R 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A41A-01 10 98154978 98154978 G A TLL2 Silent p.I564I 0.37 TCGA-EB-A41A-01 11 101347261 101347261 C T TRPC6 Missense_Mutation p.M505I 0.41 deleterious(0.02) benign(0.081) TCGA-EB-A41A-01 11 101353867 101353867 C T TRPC6 Missense_Mutation p.M441I 0.46 deleterious(0.01) probably_damaging(0.943) TCGA-EB-A41A-01 11 103107239 103107239 T C DYNC2H1 Missense_Mutation p.S3264P 0.44 probably_damaging(0.998) TCGA-EB-A41A-01 11 103814345 103814345 G A PDGFD Missense_Mutation p.P203S 0.28 tolerated(0.12) benign(0.011) TCGA-EB-A41A-01 11 10506464 10506464 C T AMPD3 Silent p.L238L 0.45 TCGA-EB-A41A-01 11 106558135 106558135 T C GUCY1A2 3'UTR 0.44 TCGA-EB-A41A-01 11 108380511 108380511 C A EXPH5 Missense_Mutation p.G1908V 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 11 110007852 110007852 C T ZC3H12C Silent p.Y162Y 0.59 TCGA-EB-A41A-01 11 113085183 113085183 C T NCAM1 Missense_Mutation p.P396S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 11 113103461 113103461 G A NCAM1 Missense_Mutation p.D532N 0.43 deleterious(0.01) possibly_damaging(0.893) TCGA-EB-A41A-01 11 113934978 113934978 G A ZBTB16 Missense_Mutation p.R319Q 0.33 tolerated(0.59) benign(0.02) TCGA-EB-A41A-01 11 116692165 116692165 G A APOA4 Silent p.P203P 0.44 TCGA-EB-A41A-01 11 117314740 117314740 C T DSCAML1 Missense_Mutation p.E1302K 0.33 tolerated(0.23) probably_damaging(0.961) TCGA-EB-A41A-01 11 117376385 117376385 G A DSCAML1 Missense_Mutation p.P676S 0.12 tolerated(0.2) possibly_damaging(0.786) TCGA-EB-A41A-01 11 117403231 117403231 C T DSCAML1 Missense_Mutation p.R233K 0.38 tolerated(0.27) possibly_damaging(0.747) TCGA-EB-A41A-01 11 117647613 117647613 C T DSCAML1 Missense_Mutation p.R195K 0.44 tolerated(0.47) benign(0.013) TCGA-EB-A41A-01 11 118919815 118919815 G A HYOU1 Missense_Mutation p.P636L 0.40 tolerated(0.14) benign(0.143) TCGA-EB-A41A-01 11 118949307 118949307 C T VPS11 Silent p.S651S 0.37 TCGA-EB-A41A-01 11 119168174 119168174 C T CBL Missense_Mutation p.T745I 0.29 tolerated_low_confidence(0.3) benign(0.008) TCGA-EB-A41A-01 11 120319046 120319046 C A ARHGEF12 Missense_Mutation p.P576T 0.43 deleterious(0) probably_damaging(0.968) TCGA-EB-A41A-01 11 120745922 120745922 C T GRIK4 Silent p.I378I 0.40 TCGA-EB-A41A-01 11 121414325 121414325 G A SORL1 Missense_Mutation p.G585D 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-EB-A41A-01 11 121437753 121437753 C T SORL1 Missense_Mutation p.P1052S 0.39 tolerated(0.28) benign(0.005) TCGA-EB-A41A-01 11 121489550 121489550 C T SORL1 Missense_Mutation p.S1891L 0.41 tolerated(0.14) benign(0.016) TCGA-EB-A41A-01 11 123814354 123814354 C T OR6T1 Silent p.R64R 0.42 TCGA-EB-A41A-01 11 123893749 123893749 C T OR10G9 Silent p.F10F 0.33 TCGA-EB-A41A-01 11 124012338 124012338 C T VWA5A Missense_Mutation p.P638L 0.44 tolerated(0.29) benign(0.001) TCGA-EB-A41A-01 11 1256389 1256389 A G MUC5B Missense_Mutation p.H902R 0.36 unknown(0) TCGA-EB-A41A-01 11 125647340 125647340 C T PATE2 Silent p.T93T 0.37 TCGA-EB-A41A-01 11 1263202 1263202 G A MUC5B Missense_Mutation p.A1698T 0.27 unknown(0) TCGA-EB-A41A-01 11 1270665 1270665 G A MUC5B Silent p.G4185G 0.35 TCGA-EB-A41A-01 11 128781480 128781480 C T KCNJ5 Silent p.F104F 0.35 TCGA-EB-A41A-01 11 129246025 129246025 C T BARX2 Missense_Mutation p.S32F 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 11 130131072 130131072 G A ZBTB44 Missense_Mutation p.P233S 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A41A-01 11 130278672 130278672 G A ADAMTS8 Silent p.F638F 0.42 TCGA-EB-A41A-01 11 132180044 132180044 C T NTM Missense_Mutation p.P234S 0.39 tolerated(0.81) benign(0.002) TCGA-EB-A41A-01 11 15247221 15247221 G A INSC Silent p.G386G 0.25 TCGA-EB-A41A-01 11 1651429 1651429 G A KRTAP5-5 Missense_Mutation p.G120D 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A41A-01 11 17491664 17491664 G A ABCC8 Silent p.F132F 0.43 TCGA-EB-A41A-01 11 17809879 17809879 G A SERGEF Missense_Mutation p.P377L 0.46 tolerated(0.54) benign(0.011) TCGA-EB-A41A-01 11 18159207 18159207 G A MRGPRX3 Missense_Mutation p.R153Q 0.47 deleterious(0.02) benign(0.003) TCGA-EB-A41A-01 11 18751288 18751288 G A PTPN5 Silent p.P469P 0.39 TCGA-EB-A41A-01 11 18955621 18955621 G A MRGPRX1 Silent p.F237F 0.48 TCGA-EB-A41A-01 11 2429012 2429012 C T TRPM5 Missense_Mutation p.M971I 0.49 tolerated(0.5) possibly_damaging(0.819) TCGA-EB-A41A-01 11 2594114 2594114 C T KCNQ1 Silent p.L273L 0.39 TCGA-EB-A41A-01 11 33564971 33564971 C T KIAA1549L Missense_Mutation p.P324L 0.47 tolerated_low_confidence(0.2) benign(0.004) TCGA-EB-A41A-01 11 33667465 33667465 C T KIAA1549L Silent p.H1584H 0.47 TCGA-EB-A41A-01 11 35454298 35454298 G A PAMR1 Missense_Mutation p.S607F 0.45 tolerated(0.08) benign(0.016) TCGA-EB-A41A-01 11 3659949 3659949 G A ART5 3'UTR 0.41 TCGA-EB-A41A-01 11 40137170 40137170 C T LRRC4C Missense_Mutation p.D225N 0.33 tolerated(0.11) benign(0.068) TCGA-EB-A41A-01 11 4389258 4389258 G A OR52B4 Missense_Mutation p.R90C 0.36 tolerated(0.18) benign(0.002) TCGA-EB-A41A-01 11 44940788 44940788 G A TSPAN18 Silent p.K119K 0.28 TCGA-EB-A41A-01 11 4567174 4567174 C T OR52M1 Silent p.L252L 0.41 TCGA-EB-A41A-01 11 45924510 45924510 C T MAPK8IP1 Missense_Mutation p.P398S 0.42 tolerated(0.09) benign(0.084) TCGA-EB-A41A-01 11 46334010 46334010 G A CREB3L1 Silent p.R296R 0.38 TCGA-EB-A41A-01 11 4661314 4661314 C T OR51D1 Silent p.F98F 0.44 TCGA-EB-A41A-01 11 4674830 4674830 C T OR51E1 3'UTR 0.50 TCGA-EB-A41A-01 11 46912014 46912014 G A LRP4 Missense_Mutation p.P577S 0.39 deleterious(0.03) possibly_damaging(0.906) TCGA-EB-A41A-01 11 47185762 47185762 G A C11orf49 3'Flank 0.45 TCGA-EB-A41A-01 11 47187050 47187050 G A ARFGAP2 Missense_Mutation p.R517C 0.47 deleterious(0.03) possibly_damaging(0.832) TCGA-EB-A41A-01 11 47753016 47753016 C T FNBP4 Missense_Mutation p.E640K 0.46 deleterious(0.04) possibly_damaging(0.585) TCGA-EB-A41A-01 11 48267123 48267123 C T OR4X2 Silent p.F156F 0.43 TCGA-EB-A41A-01 11 48285606 48285606 C T OR4X1 Missense_Mutation p.S65F 0.51 deleterious(0) probably_damaging(0.954) TCGA-EB-A41A-01 11 4903300 4903300 C T OR51T1 Silent p.L84L 0.41 TCGA-EB-A41A-01 11 4936693 4936693 G A OR51G2 Silent p.F67F 0.44 TCGA-EB-A41A-01 11 4944966 4944966 G A OR51G1 Missense_Mutation p.L202F 0.42 tolerated(0.06) possibly_damaging(0.78) TCGA-EB-A41A-01 11 49831529 49831529 G A RP11-707M1.1 RNA 0.44 TCGA-EB-A41A-01 11 49831850 49831850 G A RP11-707M1.1 RNA 0.51 TCGA-EB-A41A-01 11 5013262 5013262 C T MMP26 Nonsense_Mutation p.Q222* 0.39 TCGA-EB-A41A-01 11 5021013 5021013 G A OR51L1 Silent p.G267G 0.50 TCGA-EB-A41A-01 11 5068656 5068656 C T OR52J3 Nonsense_Mutation p.R301* 0.32 TCGA-EB-A41A-01 11 5221390 5221390 G A OR51V1 Missense_Mutation p.H181Y 0.40 deleterious(0.01) possibly_damaging(0.904) TCGA-EB-A41A-01 11 5221421 5221421 G A OR51V1 Silent p.I170I 0.31 TCGA-EB-A41A-01 11 5221595 5221595 G A OR51V1 Silent p.F112F 0.46 TCGA-EB-A41A-01 11 5275619 5275619 C T HBG2 Missense_Mutation p.G73E 0.23 tolerated(0.2) possibly_damaging(0.866) TCGA-EB-A41A-01 11 5290854 5290854 G A HBE1 Silent p.L49L 0.39 TCGA-EB-A41A-01 11 5322418 5322418 C T OR51B4 Missense_Mutation p.M253I 0.38 tolerated(1) benign(0) TCGA-EB-A41A-01 11 5323061 5323061 C T OR51B4 Missense_Mutation p.G39E 0.36 deleterious(0.01) probably_damaging(0.927) TCGA-EB-A41A-01 11 5364610 5364610 C T OR51B5 Missense_Mutation p.E49K 0.43 tolerated(0.12) benign(0.001) TCGA-EB-A41A-01 11 5530445 5530445 C T UBQLN3 Missense_Mutation p.G115E 0.33 tolerated(0.14) benign(0.043) TCGA-EB-A41A-01 11 55321856 55321856 C T OR4C15 Missense_Mutation p.P25L 0.43 tolerated_low_confidence(0.13) benign(0) TCGA-EB-A41A-01 11 555069 555069 G A C11orf35 Silent p.L606L 0.36 TCGA-EB-A41A-01 11 555070 555070 G A C11orf35 Silent p.A605A 0.38 TCGA-EB-A41A-01 11 55541205 55541205 G A OR5D13 Missense_Mutation p.G98S 0.46 tolerated(0.13) benign(0.023) TCGA-EB-A41A-01 11 55579597 55579597 C T OR5L1 Silent p.L219L 0.36 TCGA-EB-A41A-01 11 55595193 55595193 C T OR5L2 Missense_Mutation p.L167F 0.39 deleterious(0.05) benign(0.226) TCGA-EB-A41A-01 11 55681124 55681124 C T OR5W2 3'Flank 0.50 TCGA-EB-A41A-01 11 55798780 55798780 G A OR5AS1 Missense_Mutation p.D296N 0.46 deleterious(0.01) probably_damaging(0.931) TCGA-EB-A41A-01 11 55927669 55927669 T C OR8K5 Missense_Mutation p.N42S 0.43 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EB-A41A-01 11 55927766 55927766 T C OR8K5 Missense_Mutation p.T10A 0.42 tolerated_low_confidence(0.1) benign(0.156) TCGA-EB-A41A-01 11 55999986 55999986 T A OR5T2 Missense_Mutation p.I226F 0.38 deleterious(0) probably_damaging(0.958) TCGA-EB-A41A-01 11 56057807 56057807 G A OR8H1 Silent p.L244L 0.47 TCGA-EB-A41A-01 11 56230749 56230749 C T OR5M9 Missense_Mutation p.M43I 0.41 deleterious(0.05) benign(0.023) TCGA-EB-A41A-01 11 57080073 57080073 C G TNKS1BP1 Missense_Mutation p.G697R 0.32 deleterious(0.01) benign(0.413) TCGA-EB-A41A-01 11 5730610 5730610 T C TRIM22 Missense_Mutation p.I410T 0.49 deleterious(0.02) probably_damaging(0.955) TCGA-EB-A41A-01 11 57313775 57313775 G A SMTNL1 Silent p.K399K 0.24 TCGA-EB-A41A-01 11 5758341 5758341 G A OR56B1 Missense_Mutation p.D199N 0.53 deleterious(0.05) probably_damaging(0.996) TCGA-EB-A41A-01 11 5776150 5776150 C T OR52N4 Silent p.P60P 0.51 TCGA-EB-A41A-01 11 57995867 57995867 G A OR10Q1 Silent p.L161L 0.57 TCGA-EB-A41A-01 11 5809569 5809569 G A OR52N1 Missense_Mutation p.P160S 0.40 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 11 5809570 5809570 G A OR52N1 Silent p.I159I 0.40 TCGA-EB-A41A-01 11 58206959 58206959 G A OR5B12 Silent p.T222T 0.45 TCGA-EB-A41A-01 11 58392013 58392013 C T CNTF 3'UTR 0.12 TCGA-EB-A41A-01 11 58604858 58604858 C T GLYATL2 Missense_Mutation p.D67N 0.38 tolerated(0.06) probably_damaging(0.915) TCGA-EB-A41A-01 11 58722360 58722360 C T GLYATL1 Nonsense_Mutation p.Q133* 0.42 TCGA-EB-A41A-01 11 58723110 58723110 G A GLYATL1 Silent p.Q204Q 0.46 TCGA-EB-A41A-01 11 58919354 58919354 C T FAM111A Silent p.T71T 0.11 TCGA-EB-A41A-01 11 59189578 59189578 G A OR5A2 Silent p.I283I 0.29 TCGA-EB-A41A-01 11 59245655 59245655 C T OR4D10 Silent p.F251F 0.48 TCGA-EB-A41A-01 11 59271740 59271740 G A OR4D11 Missense_Mutation p.G231E 0.37 tolerated(1) benign(0) TCGA-EB-A41A-01 11 59282568 59282568 C T OR4D9 Silent p.F61F 0.40 TCGA-EB-A41A-01 11 5969086 5969086 C T OR56A3 Silent p.L170L 0.42 TCGA-EB-A41A-01 11 6048423 6048423 G A OR56A1 Missense_Mutation p.S171F 0.40 deleterious(0) possibly_damaging(0.452) TCGA-EB-A41A-01 11 60780969 60780969 G A CD6 Missense_Mutation p.G409R 0.35 deleterious(0) probably_damaging(0.972) TCGA-EB-A41A-01 11 61572177 61572177 T A FADS1 Missense_Mutation p.I345F 0.55 tolerated(0.32) benign(0.012) TCGA-EB-A41A-01 11 62299885 62299885 G A AHNAK Silent p.A668A 0.47 TCGA-EB-A41A-01 11 62327791 62327791 T C EEF1G Silent p.E331E 0.35 TCGA-EB-A41A-01 11 62362495 62362495 G A MTA2 Missense_Mutation p.P511S 0.36 tolerated(0.79) benign(0.001) TCGA-EB-A41A-01 11 6239109 6239109 G A FAM160A2 Silent p.C583C 0.48 TCGA-EB-A41A-01 11 62458846 62458846 G T BSCL2 Missense_Mutation p.A304D 0.38 deleterious(0) possibly_damaging(0.462) TCGA-EB-A41A-01 11 62458847 62458847 C T BSCL2 Missense_Mutation p.A304T 0.37 tolerated(0.09) benign(0.091) TCGA-EB-A41A-01 11 62554186 62554186 G T TAF6L Missense_Mutation p.E429D 0.47 tolerated_low_confidence(0.56) benign(0.001) TCGA-EB-A41A-01 11 62569098 62569098 G A NXF1 Silent p.I215I 0.38 TCGA-EB-A41A-01 11 63059014 63059014 G A SLC22A10 Nonsense_Mutation p.W135* 0.46 TCGA-EB-A41A-01 11 63141135 63141135 C T SLC22A9 Missense_Mutation p.L176F 0.46 tolerated(0.19) possibly_damaging(0.539) TCGA-EB-A41A-01 11 63283826 63283826 G A LGALS12 Silent p.R325R 0.38 TCGA-EB-A41A-01 11 64708113 64708113 C T C11orf85 Missense_Mutation p.G160E 0.41 tolerated(0.84) benign(0.219) TCGA-EB-A41A-01 11 6503075 6503075 C T TIMM10B Missense_Mutation p.A43V 0.43 tolerated(0.29) benign(0.124) TCGA-EB-A41A-01 11 65088791 65088791 C T CDC42EP2 Missense_Mutation p.S141F 0.53 deleterious(0.03) benign(0.169) TCGA-EB-A41A-01 11 65108013 65108013 C T DPF2 Missense_Mutation p.P64S 0.49 deleterious(0) possibly_damaging(0.608) TCGA-EB-A41A-01 11 65373427 65373427 G A MAP3K11 Nonsense_Mutation p.Q577* 0.38 TCGA-EB-A41A-01 11 65792797 65792797 G A CATSPER1 Missense_Mutation p.H352Y 0.46 tolerated(0.14) benign(0.439) TCGA-EB-A41A-01 11 66134957 66134957 G A SLC29A2 Silent p.T237T 0.35 TCGA-EB-A41A-01 11 67226143 67226143 G A CABP4 3'UTR 0.39 TCGA-EB-A41A-01 11 67376146 67376146 C T NDUFV1 Silent p.F93F 0.38 TCGA-EB-A41A-01 11 6816268 6816268 C T OR6A2 Silent p.V224V 0.28 TCGA-EB-A41A-01 11 6891794 6891794 C T OR10A2 Missense_Mutation p.P270L 0.43 deleterious(0) probably_damaging(0.981) TCGA-EB-A41A-01 11 6913327 6913327 G A OR2D2 Silent p.I135I 0.45 TCGA-EB-A41A-01 11 71164258 71164258 G T NADSYN1 5'UTR 0.36 TCGA-EB-A41A-01 11 71164259 71164259 G T NADSYN1 5'UTR 0.36 TCGA-EB-A41A-01 11 71276969 71276969 G A KRTAP5-10 Silent p.G112G 0.40 TCGA-EB-A41A-01 11 71712732 71712732 G A IL18BP Intron 0.40 TCGA-EB-A41A-01 11 71727516 71727516 A G NUMA1 Silent p.L394L 0.42 TCGA-EB-A41A-01 11 71949405 71949405 G C INPPL1 3'UTR 0.14 TCGA-EB-A41A-01 11 72145596 72145596 G A CLPB 5'UTR 0.41 TCGA-EB-A41A-01 11 73441840 73441840 G A RAB6A Silent p.F33F 0.36 TCGA-EB-A41A-01 11 75852180 75852180 C T UVRAG Missense_Mutation p.S608F 0.37 tolerated_low_confidence(0.73) benign(0.004) TCGA-EB-A41A-01 11 77728004 77728004 G A KCTD14 Missense_Mutation p.R135W 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 11 77930162 77930162 G A GAB2 3'UTR 0.67 TCGA-EB-A41A-01 11 7949304 7949304 C T OR10A6 Missense_Mutation p.M302I 0.45 tolerated(0.26) benign(0) TCGA-EB-A41A-01 11 7981739 7981739 G A NLRP10 Missense_Mutation p.H474Y 0.43 tolerated(0.72) benign(0.001) TCGA-EB-A41A-01 11 8008846 8008846 C T EIF3F 5'UTR 0.42 TCGA-EB-A41A-01 11 88780774 88780774 G A GRM5 Silent p.I89I 0.41 TCGA-EB-A41A-01 11 89421791 89421791 C T FOLH1B RNA 0.34 TCGA-EB-A41A-01 11 89774731 89774731 C T TRIM49C 3'UTR 0.40 TCGA-EB-A41A-01 11 92532853 92532853 G A FAT3 Missense_Mutation p.G2225E 0.32 probably_damaging(1) TCGA-EB-A41A-01 11 94316683 94316683 C T PIWIL4 Silent p.L195L 0.39 TCGA-EB-A41A-01 11 94353008 94353008 C T PIWIL4 Missense_Mutation p.P751S 0.19 tolerated(0.14) possibly_damaging(0.516) TCGA-EB-A41A-01 12 10005967 10005967 C T CLEC2B Missense_Mutation p.D128N 0.36 tolerated(0.1) benign(0.218) TCGA-EB-A41A-01 12 100551324 100551324 C T AC010203.1 5'Flank 0.14 TCGA-EB-A41A-01 12 100551335 100551335 C T AC010203.1 5'Flank 0.39 TCGA-EB-A41A-01 12 100603890 100603890 C T ACTR6 Missense_Mutation p.P140L 0.44 tolerated(0.07) possibly_damaging(0.628) TCGA-EB-A41A-01 12 100774643 100774643 C T SLC17A8 Missense_Mutation p.S89F 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 12 101493471 101493471 G A ANO4 Missense_Mutation p.G673R 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 12 101505376 101505376 C T ANO4 Missense_Mutation p.L745F 0.34 deleterious(0.03) probably_damaging(0.972) TCGA-EB-A41A-01 12 103232893 103232893 G A PAH 3'UTR 0.37 TCGA-EB-A41A-01 12 104046352 104046352 G A STAB2 Missense_Mutation p.D426N 0.35 tolerated(0.62) benign(0.094) TCGA-EB-A41A-01 12 104492139 104492139 C T HCFC2 Missense_Mutation p.P587S 0.44 tolerated(0.09) benign(0.006) TCGA-EB-A41A-01 12 105260242 105260242 C T SLC41A2 Nonsense_Mutation p.W381* 0.47 TCGA-EB-A41A-01 12 105282888 105282888 C T SLC41A2 Missense_Mutation p.G268E 0.43 tolerated(0.15) benign(0.367) TCGA-EB-A41A-01 12 105557937 105557937 C T KIAA1033 Missense_Mutation p.S1069L 0.40 deleterious(0) possibly_damaging(0.69) TCGA-EB-A41A-01 12 107090072 107090072 C T RFX4 Silent p.F236F 0.55 TCGA-EB-A41A-01 12 10777375 10777375 G A STYK1 Silent p.L267L 0.46 TCGA-EB-A41A-01 12 107937907 107937907 A G BTBD11 Missense_Mutation p.Q494R 0.42 tolerated(0.53) benign(0.032) TCGA-EB-A41A-01 12 108043195 108043195 C T BTBD11 Intron 0.50 TCGA-EB-A41A-01 12 108642202 108642202 C T WSCD2 3'UTR 0.23 TCGA-EB-A41A-01 12 109604784 109604784 C T ACACB Missense_Mutation p.R258W 0.41 tolerated(0.11) possibly_damaging(0.587) TCGA-EB-A41A-01 12 10978191 10978191 C T TAS2R10 Missense_Mutation p.M226I 0.41 tolerated(0.2) possibly_damaging(0.773) TCGA-EB-A41A-01 12 111779729 111779729 C T CUX2 Silent p.P1177P 0.42 TCGA-EB-A41A-01 12 11214555 11214555 G A TAS2R46 Silent p.F113F 0.41 TCGA-EB-A41A-01 12 112666033 112666033 A G HECTD4 Silent p.T2092T 0.30 TCGA-EB-A41A-01 12 112910842 112910842 C T PTPN11 Missense_Mutation p.P284L 0.42 deleterious(0.02) benign(0.1) TCGA-EB-A41A-01 12 113405808 113405808 A G OAS3 Missense_Mutation p.Y978C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 12 114793239 114793239 C T TBX5 3'UTR 0.80 TCGA-EB-A41A-01 12 114837332 114837332 G A TBX5 Silent p.F116F 0.54 TCGA-EB-A41A-01 12 11506312 11506312 C T PRB1 Missense_Mutation p.G109E 0.43 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A41A-01 12 117703169 117703169 G A NOS1 Silent p.F696F 0.50 TCGA-EB-A41A-01 12 117768201 117768201 C T NOS1 Missense_Mutation p.G225E 0.46 deleterious_low_confidence(0.01) benign(0.138) TCGA-EB-A41A-01 12 119926651 119926651 G A CCDC60 Silent p.V179V 0.42 TCGA-EB-A41A-01 12 121164928 121164928 C T ACADS Missense_Mutation p.A49V 0.39 tolerated(0.07) benign(0.04) TCGA-EB-A41A-01 12 122190100 122190100 C T TMEM120B Silent p.A144A 0.49 TCGA-EB-A41A-01 12 122657009 122657009 C T IL31 Missense_Mutation p.D149N 0.11 tolerated(0.25) benign(0.069) TCGA-EB-A41A-01 12 122862043 122862043 G A CLIP1 Missense_Mutation p.P184S 0.50 tolerated(0.52) benign(0.011) TCGA-EB-A41A-01 12 124172707 124172707 T C TCTN2 Missense_Mutation p.Y292H 0.50 deleterious(0.03) benign(0.119) TCGA-EB-A41A-01 12 124268530 124268530 G A DNAH10 Missense_Mutation p.E285K 0.15 possibly_damaging(0.752) TCGA-EB-A41A-01 12 124496707 124496707 C A ZNF664 Missense_Mutation p.P6T 0.20 tolerated(0.13) benign(0) TCGA-EB-A41A-01 12 124496709 124496709 C T ZNF664 Silent p.P6P 0.18 TCGA-EB-A41A-01 12 126139214 126139214 G A TMEM132B Silent p.Q1065Q 0.39 TCGA-EB-A41A-01 12 128899737 128899737 G A TMEM132C Silent p.R182R 0.47 TCGA-EB-A41A-01 12 129559446 129559446 C T TMEM132D Silent p.A758A 0.32 TCGA-EB-A41A-01 12 129569319 129569319 G A TMEM132D Intron 0.64 TCGA-EB-A41A-01 12 131569132 131569132 G A GPR133 Missense_Mutation p.G532E 0.34 deleterious(0.05) probably_damaging(0.986) TCGA-EB-A41A-01 12 132426061 132426061 C T PUS1 Missense_Mutation p.P257S 0.41 deleterious(0) probably_damaging(0.911) TCGA-EB-A41A-01 12 133201183 133201183 G A POLE 3'UTR 0.56 TCGA-EB-A41A-01 12 133764560 133764560 C T ZNF268 Missense_Mutation p.P46S 0.50 tolerated_low_confidence(0.48) benign(0.002) TCGA-EB-A41A-01 12 13716857 13716857 G C GRIN2B Missense_Mutation p.I1105M 0.34 tolerated(0.06) probably_damaging(0.988) TCGA-EB-A41A-01 12 13716878 13716878 G A GRIN2B Silent p.S1098S 0.48 TCGA-EB-A41A-01 12 14664638 14664638 C T PLBD1 Silent p.L284L 0.38 TCGA-EB-A41A-01 12 18891941 18891941 T C CAPZA3 Silent p.L247L 0.41 TCGA-EB-A41A-01 12 20874944 20874944 C T SLCO1C1 Missense_Mutation p.P328S 0.39 tolerated(0.47) benign(0.006) TCGA-EB-A41A-01 12 21427460 21427460 C T SLCO1A2 Missense_Mutation p.G579E 0.39 deleterious(0) probably_damaging(0.986) TCGA-EB-A41A-01 12 21918509 21918509 G A KCNJ8 3'UTR 0.21 TCGA-EB-A41A-01 12 22028628 22028628 A G ABCC9 Silent p.G684G 0.44 TCGA-EB-A41A-01 12 2224643 2224643 C T CACNA1C Silent p.P101P 0.07 TCGA-EB-A41A-01 12 25034302 25034302 A G BCAT1 Missense_Mutation p.I120T 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-EB-A41A-01 12 25148948 25148948 C T C12orf77 Missense_Mutation p.G67E 0.29 tolerated_low_confidence(0.21) benign(0.058) TCGA-EB-A41A-01 12 25263070 25263070 G A CASC1 Silent p.V628V 0.31 TCGA-EB-A41A-01 12 266857 266857 C T IQSEC3 Nonsense_Mutation p.R814* 0.47 TCGA-EB-A41A-01 12 26775274 26775274 G A ITPR2 Missense_Mutation p.H1063Y 0.39 deleterious(0.03) possibly_damaging(0.806) TCGA-EB-A41A-01 12 2786884 2786884 C T CACNA1C Intron 0.39 TCGA-EB-A41A-01 12 2908382 2908382 G A FKBP4 Missense_Mutation p.E215K 0.51 deleterious(0) probably_damaging(0.95) TCGA-EB-A41A-01 12 31632894 31632894 G A DENND5B Missense_Mutation p.S178F 0.37 deleterious(0.03) possibly_damaging(0.836) TCGA-EB-A41A-01 12 32137490 32137490 G T KIAA1551 Nonsense_Mutation p.E1201* 0.35 TCGA-EB-A41A-01 12 39994485 39994485 G A ABCD2 Missense_Mutation p.P512S 0.41 deleterious(0) benign(0.36) TCGA-EB-A41A-01 12 40044126 40044126 G A C12orf40 Missense_Mutation p.R219Q 0.42 tolerated(1) benign(0) TCGA-EB-A41A-01 12 40114614 40114614 C T C12orf40 Missense_Mutation p.S507L 0.46 tolerated(1) benign(0.001) TCGA-EB-A41A-01 12 41327645 41327645 G A CNTN1 Missense_Mutation p.G317E 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 12 41587911 41587911 G A PDZRN4 Missense_Mutation p.G255E 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A41A-01 12 41966563 41966563 G A PDZRN4 Missense_Mutation p.G661E 0.38 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 12 43777662 43777662 C T ADAMTS20 Missense_Mutation p.R1524Q 0.41 tolerated(0.76) benign(0.006) TCGA-EB-A41A-01 12 45410265 45410265 G A DBX2 Missense_Mutation p.P275L 0.39 deleterious(0) benign(0.393) TCGA-EB-A41A-01 12 4543396 4543396 G A FGF6 Silent p.F204F 0.54 TCGA-EB-A41A-01 12 45568118 45568118 G A PLEKHA8P1 RNA 0.38 TCGA-EB-A41A-01 12 46244473 46244473 C T ARID2 Missense_Mutation p.T856I 0.39 deleterious_low_confidence(0.01) benign(0.074) TCGA-EB-A41A-01 12 46244667 46244667 C T ARID2 Missense_Mutation p.P921S 0.39 tolerated_low_confidence(0.42) benign(0.004) TCGA-EB-A41A-01 12 47629132 47629132 C T PCED1B Missense_Mutation p.R96C 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 12 47630056 47630056 C T PCED1B Missense_Mutation p.R404C 0.47 tolerated(0.18) benign(0) TCGA-EB-A41A-01 12 48482967 48482967 G A SENP1 Intron 0.39 TCGA-EB-A41A-01 12 48578238 48578238 C G C12orf68 Missense_Mutation p.F111L 0.45 tolerated_low_confidence(0.7) benign(0.001) TCGA-EB-A41A-01 12 48866516 48866516 C T ANP32D Silent p.F23F 0.29 TCGA-EB-A41A-01 12 48886772 48886772 G A C12orf54 Missense_Mutation p.R79K 0.33 tolerated(0.68) benign(0.104) TCGA-EB-A41A-01 12 49162803 49162803 G A ADCY6 Missense_Mutation p.R1100W 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 12 4920414 4920414 G A KCNA6 Missense_Mutation p.D403N 0.45 tolerated(0.37) possibly_damaging(0.54) TCGA-EB-A41A-01 12 49391945 49391945 C T DDN Silent p.R238R 0.39 TCGA-EB-A41A-01 12 49412648 49412648 G A PRKAG1 5'Flank 0.50 TCGA-EB-A41A-01 12 49942790 49942790 G A KCNH3 Silent p.E434E 0.30 TCGA-EB-A41A-01 12 51115160 51115160 G A DIP2B Silent p.V1049V 0.39 TCGA-EB-A41A-01 12 52710317 52710317 C G KRT83 Missense_Mutation p.E326Q 0.33 deleterious(0.01) possibly_damaging(0.841) TCGA-EB-A41A-01 12 52863032 52863032 G A KRT6C Silent p.V503V 0.30 TCGA-EB-A41A-01 12 52942077 52942077 G T KRT71 Missense_Mutation p.H279Q 0.36 tolerated(0.22) probably_damaging(0.961) TCGA-EB-A41A-01 12 53240568 53240568 C T KRT78 Missense_Mutation p.D214N 0.42 deleterious(0) probably_damaging(0.99) TCGA-EB-A41A-01 12 53421572 53421572 G A EIF4B Missense_Mutation p.R225Q 0.40 deleterious(0.01) benign(0.238) TCGA-EB-A41A-01 12 53621199 53621199 G A RARG Missense_Mutation p.P44L 0.42 tolerated_low_confidence(0.08) benign(0.001) TCGA-EB-A41A-01 12 53693481 53693481 C T C12orf10 5'UTR 0.45 TCGA-EB-A41A-01 12 54971308 54971308 C T PPP1R1A 3'Flank 0.43 TCGA-EB-A41A-01 12 55248385 55248385 C T MUCL1 Silent p.L7L 0.49 TCGA-EB-A41A-01 12 55356859 55356859 C T TESPA1 Missense_Mutation p.E275K 0.40 deleterious(0) possibly_damaging(0.886) TCGA-EB-A41A-01 12 55361663 55361663 C T TESPA1 Missense_Mutation p.G74R 0.52 deleterious(0.04) benign(0.258) TCGA-EB-A41A-01 12 55420256 55420256 G - NEUROD4 Frame_Shift_Del p.G12Efs*3 0.30 TCGA-EB-A41A-01 12 55523827 55523827 C T OR9K2 Missense_Mutation p.S92F 0.39 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 12 55688881 55688881 G A OR6C6 Missense_Mutation p.L46F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-EB-A41A-01 12 55794637 55794637 G A OR6C65 Missense_Mutation p.E109K 0.36 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EB-A41A-01 12 55794805 55794805 G A OR6C65 Missense_Mutation p.D165N 0.43 deleterious_low_confidence(0.02) probably_damaging(0.923) TCGA-EB-A41A-01 12 55863568 55863568 C T OR6C70 Missense_Mutation p.D119N 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A41A-01 12 55863590 55863590 G A OR6C70 Silent p.F111F 0.40 TCGA-EB-A41A-01 12 55887034 55887034 G A OR6C68 Silent p.R291R 0.32 TCGA-EB-A41A-01 12 56749512 56749512 G A STAT2 Nonsense_Mutation p.Q121* 0.33 TCGA-EB-A41A-01 12 57111495 57111495 G A NACA Intron 0.39 TCGA-EB-A41A-01 12 57111496 57111496 G A NACA Intron 0.40 TCGA-EB-A41A-01 12 57407165 57407165 C T TAC3 Silent p.K72K 0.50 TCGA-EB-A41A-01 12 57407167 57407167 T C TAC3 Missense_Mutation p.K72E 0.51 deleterious(0.03) benign(0.074) TCGA-EB-A41A-01 12 57454686 57454686 G A TMEM194A Silent p.L341L 0.41 TCGA-EB-A41A-01 12 57648631 57648631 G A R3HDM2 Silent p.S952S 0.38 TCGA-EB-A41A-01 12 57850015 57850015 G A INHBE Missense_Mutation p.G146E 0.42 tolerated(0.07) benign(0.185) TCGA-EB-A41A-01 12 57963835 57963835 G A KIF5A Missense_Mutation p.E395K 0.40 tolerated(0.35) benign(0.022) TCGA-EB-A41A-01 12 5941751 5941751 C T ANO2 Missense_Mutation p.G214R 0.41 tolerated(0.61) benign(0.004) TCGA-EB-A41A-01 12 6161740 6161740 C T VWF Missense_Mutation p.E719K 0.35 tolerated(0.1) benign(0.037) TCGA-EB-A41A-01 12 6710107 6710108 - T CHD4 Frame_Shift_Ins p.R305Afs*2 0.29 TCGA-EB-A41A-01 12 6772304 6772304 G A ING4 5'UTR 0.41 TCGA-EB-A41A-01 12 69109499 69109499 C T NUP107 Silent p.I354I 0.44 TCGA-EB-A41A-01 12 69109500 69109500 C T NUP107 Missense_Mutation p.R355C 0.43 deleterious(0) probably_damaging(0.982) TCGA-EB-A41A-01 12 69127276 69127276 C T NUP107 Missense_Mutation p.P716S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 12 69140310 69140310 C T SLC35E3 Silent p.F51F 0.25 TCGA-EB-A41A-01 12 6965611 6965611 C T USP5 Missense_Mutation p.P194L 0.32 deleterious(0.03) possibly_damaging(0.503) TCGA-EB-A41A-01 12 6972356 6972356 C T USP5 Missense_Mutation p.S590F 0.38 deleterious(0.05) probably_damaging(0.931) TCGA-EB-A41A-01 12 7022029 7022029 C T LRRC23 Silent p.Y298Y 0.41 TCGA-EB-A41A-01 12 70949918 70949918 C T PTPRB Silent p.K1575K 0.39 TCGA-EB-A41A-01 12 70953034 70953034 G A PTPRB Intron 0.42 TCGA-EB-A41A-01 12 71531763 71531763 G A TSPAN8 Silent p.F138F 0.43 TCGA-EB-A41A-01 12 71533514 71533514 C T TSPAN8 Missense_Mutation p.E80K 0.13 deleterious(0.03) probably_damaging(1) TCGA-EB-A41A-01 12 7188156 7188156 C T C1R Missense_Mutation p.E548K 0.58 tolerated(0.69) benign(0.001) TCGA-EB-A41A-01 12 7548908 7548908 G A CD163L1 Silent p.G611G 0.43 TCGA-EB-A41A-01 12 75875685 75875685 G A GLIPR1 Silent p.R82R 0.37 TCGA-EB-A41A-01 12 75897712 75897712 G A KRR1 Missense_Mutation p.P268L 0.36 deleterious(0.03) probably_damaging(0.993) TCGA-EB-A41A-01 12 7639511 7639511 C T CD163 Missense_Mutation p.E708K 0.45 tolerated(0.12) benign(0.009) TCGA-EB-A41A-01 12 77216283 77216283 C T ZDHHC17 Missense_Mutation p.S290F 0.45 tolerated(0.6) probably_damaging(0.979) TCGA-EB-A41A-01 12 7890057 7890057 C T CLEC4C Missense_Mutation p.D117N 0.46 deleterious(0.03) benign(0.016) TCGA-EB-A41A-01 12 79679689 79679689 G A SYT1 Missense_Mutation p.G97R 0.41 tolerated(0.1) possibly_damaging(0.558) TCGA-EB-A41A-01 12 81101552 81101552 A T MYF6 Missense_Mutation p.E18D 0.41 tolerated(0.82) benign(0.028) TCGA-EB-A41A-01 12 81110986 81110986 C T MYF5 Silent p.G48G 0.41 TCGA-EB-A41A-01 12 81111096 81111096 G A MYF5 Missense_Mutation p.R85Q 0.54 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 12 81593145 81593145 G A ACSS3 Missense_Mutation p.E426K 0.52 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 12 81719572 81719572 G A PPFIA2 Nonsense_Mutation p.R876* 0.34 TCGA-EB-A41A-01 12 83251299 83251299 T C TMTC2 Silent p.V198V 0.44 TCGA-EB-A41A-01 12 89998001 89998001 G A ATP2B1 Silent p.F855F 0.38 TCGA-EB-A41A-01 12 91347246 91347246 C T CCER1 3'UTR 0.38 TCGA-EB-A41A-01 12 91347349 91347349 G A CCER1 Missense_Mutation p.P391S 0.46 tolerated(0.06) unknown(0) TCGA-EB-A41A-01 12 91371890 91371890 C T EPYC Silent p.G105G 0.44 TCGA-EB-A41A-01 12 9307339 9307339 G A PZP Missense_Mutation p.S1216F 0.37 deleterious(0) possibly_damaging(0.803) TCGA-EB-A41A-01 12 94631572 94631572 A T PLXNC1 Nonsense_Mutation p.K705* 0.38 TCGA-EB-A41A-01 12 95694185 95694185 C T VEZT Silent p.Y692Y 0.38 TCGA-EB-A41A-01 12 95927909 95927909 G A USP44 Missense_Mutation p.L42F 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 12 97073455 97073455 G A C12orf55 Missense_Mutation p.E1881K 0.41 tolerated(0.16) benign(0.013) TCGA-EB-A41A-01 12 97102570 97102570 C T C12orf55 Missense_Mutation p.P2238L 0.52 tolerated(0.17) benign(0) TCGA-EB-A41A-01 12 97137616 97137616 C T C12orf55 Silent p.F2495F 0.55 TCGA-EB-A41A-01 12 98126404 98126404 G A RP11-1016B18.1 RNA 0.75 TCGA-EB-A41A-01 12 98927146 98927146 C T TMPO Missense_Mutation p.P371S 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EB-A41A-01 13 101753175 101753175 C T NALCN Missense_Mutation p.G1041E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EB-A41A-01 13 103698526 103698526 G A SLC10A2 Missense_Mutation p.S335L 0.35 tolerated(0.08) benign(0.001) TCGA-EB-A41A-01 13 106119381 106119381 G A DAOA Intron 0.39 TCGA-EB-A41A-01 13 113736850 113736850 A T MCF2L Missense_Mutation p.H662L 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 13 113773019 113773019 G A F7 Missense_Mutation p.M366I 0.30 tolerated(0.18) possibly_damaging(0.676) TCGA-EB-A41A-01 13 114193713 114193713 C T TMCO3 Silent p.F527F 0.45 TCGA-EB-A41A-01 13 19748020 19748020 C T TUBA3C Missense_Mutation p.E446K 0.43 deleterious_low_confidence(0.02) unknown(0) TCGA-EB-A41A-01 13 23910909 23910909 G A SACS Missense_Mutation p.P2369L 0.44 probably_damaging(0.999) TCGA-EB-A41A-01 13 25171741 25171741 C T RP11-556N21.1 RNA 0.50 TCGA-EB-A41A-01 13 25373588 25373588 C T RNF17 Silent p.I485I 0.40 TCGA-EB-A41A-01 13 28841302 28841302 C T PAN3 Silent p.I548I 0.49 TCGA-EB-A41A-01 13 28880898 28880898 G A FLT1 Silent p.G1244G 0.55 TCGA-EB-A41A-01 13 29599766 29599766 G A MTUS2 Missense_Mutation p.D321N 0.47 deleterious(0) benign(0.003) TCGA-EB-A41A-01 13 32863824 32863824 T A FRY Missense_Mutation p.F2842I 0.47 tolerated(0.35) possibly_damaging(0.562) TCGA-EB-A41A-01 13 33635228 33635228 G A KL Missense_Mutation p.R671Q 0.36 tolerated(0.53) benign(0.294) TCGA-EB-A41A-01 13 35644114 35644114 G A NBEA Missense_Mutation p.G437R 0.34 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 13 37439743 37439743 A C SMAD9 Missense_Mutation p.C312G 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 13 37569729 37569729 G A ALG5 Missense_Mutation p.S24F 0.40 tolerated(0.7) benign(0.194) TCGA-EB-A41A-01 13 38160385 38160385 G A POSTN Silent p.A262A 0.36 TCGA-EB-A41A-01 13 38357408 38357408 C T TRPC4 Silent p.R21R 0.47 TCGA-EB-A41A-01 13 39266512 39266512 C T FREM2 Silent p.F1677F 0.53 TCGA-EB-A41A-01 13 39357241 39357241 C T FREM2 Silent p.S1892S 0.37 TCGA-EB-A41A-01 13 43918835 43918835 C T ENOX1 Missense_Mutation p.R292Q 0.28 deleterious(0.03) benign(0.096) TCGA-EB-A41A-01 13 45010861 45010861 G A TSC22D1 Intron 0.47 TCGA-EB-A41A-01 13 45975333 45975333 G A SLC25A30 Missense_Mutation p.L167F 0.37 tolerated(0.06) possibly_damaging(0.486) TCGA-EB-A41A-01 13 50204770 50204770 G A ARL11 Missense_Mutation p.D63N 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 13 52676241 52676241 T G NEK5 Missense_Mutation p.Y266S 0.43 deleterious(0) benign(0.314) TCGA-EB-A41A-01 13 53617255 53617255 C T OLFM4 Missense_Mutation p.L196F 0.46 tolerated(0.12) benign(0.062) TCGA-EB-A41A-01 13 60545020 60545020 G T DIAPH3 Missense_Mutation p.P642H 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-EB-A41A-01 13 67799944 67799944 G A PCDH9 Missense_Mutation p.P877S 0.41 tolerated(0.32) probably_damaging(0.985) TCGA-EB-A41A-01 13 72063265 72063265 G A DACH1 Missense_Mutation p.S531F 0.33 possibly_damaging(0.637) TCGA-EB-A41A-01 13 73347911 73347911 G A DIS3 Missense_Mutation p.R384C 0.44 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 13 76395310 76395310 A G LMO7 Intron 0.27 TCGA-EB-A41A-01 13 77672205 77672205 G A MYCBP2 Silent p.A2990A 0.46 TCGA-EB-A41A-01 13 84453688 84453688 C T SLITRK1 Missense_Mutation p.R652Q 0.47 tolerated(0.54) benign(0.417) TCGA-EB-A41A-01 13 84454643 84454643 G A SLITRK1 Missense_Mutation p.P334S 0.41 tolerated(0.06) benign(0.002) TCGA-EB-A41A-01 13 93518787 93518787 T A GPC5 3'UTR 0.32 TCGA-EB-A41A-01 13 97600357 97600357 C T RP11-65L19.4 5'Flank 0.33 TCGA-EB-A41A-01 13 99538846 99538846 G A DOCK9 Silent p.F692F 0.34 TCGA-EB-A41A-01 14 100384146 100384146 C T EML1 Missense_Mutation p.P613S 0.80 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 14 100604201 100604201 C T EVL Intron 0.73 TCGA-EB-A41A-01 14 105408872 105408872 G A AHNAK2 Missense_Mutation p.P4306S 0.73 probably_damaging(0.998) TCGA-EB-A41A-01 14 105416297 105416297 G A AHNAK2 Missense_Mutation p.P1831S 0.10 possibly_damaging(0.905) TCGA-EB-A41A-01 14 106173589 106173589 C T IGHA1 Silent p.Q326Q 0.37 TCGA-EB-A41A-01 14 19377629 19377629 G A OR11H12 Missense_Mutation p.M12I 0.34 deleterious(0.02) benign(0.291) TCGA-EB-A41A-01 14 19553914 19553914 G A POTEG Missense_Mutation p.M166I 0.18 tolerated(0.16) benign(0.001) TCGA-EB-A41A-01 14 19563653 19563653 C T POTEG Intron 0.33 TCGA-EB-A41A-01 14 19573100 19573100 G A POTEG Missense_Mutation p.E400K 0.08 tolerated(1) benign(0) TCGA-EB-A41A-01 14 19988478 19988478 G A POTEM 3'UTR 0.32 TCGA-EB-A41A-01 14 20215789 20215789 C T OR4Q3 Missense_Mutation p.S68F 0.33 deleterious(0) probably_damaging(0.924) TCGA-EB-A41A-01 14 20216025 20216025 C T OR4Q3 Missense_Mutation p.L147F 0.26 tolerated(0.39) benign(0.002) TCGA-EB-A41A-01 14 20296113 20296113 G T OR4N2 Missense_Mutation p.C169F 0.22 deleterious(0) possibly_damaging(0.656) TCGA-EB-A41A-01 14 20404214 20404214 T G OR4K1 Missense_Mutation p.L130R 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 14 20443780 20443780 G A OR4K15 Missense_Mutation p.E35K 0.49 deleterious(0.01) possibly_damaging(0.484) TCGA-EB-A41A-01 14 20502207 20502207 G A OR4K13 Silent p.F237F 0.44 TCGA-EB-A41A-01 14 20612589 20612589 G A OR4N5 Missense_Mutation p.G232E 0.40 deleterious(0.02) probably_damaging(0.928) TCGA-EB-A41A-01 14 20779894 20779894 G A CCNB1IP1 Missense_Mutation p.P217S 0.44 tolerated_low_confidence(0.16) benign(0.011) TCGA-EB-A41A-01 14 20844358 20844358 G A TEP1 Missense_Mutation p.P2052S 0.34 tolerated(0.25) benign(0.212) TCGA-EB-A41A-01 14 20856071 20856071 G A TEP1 Nonsense_Mutation p.Q893* 0.35 TCGA-EB-A41A-01 14 21109333 21109333 T G OR6S1 Missense_Mutation p.Q173P 0.43 tolerated(1) benign(0.023) TCGA-EB-A41A-01 14 21162264 21162264 C T ANG 3'UTR 0.56 TCGA-EB-A41A-01 14 21488736 21488736 G T NDRG2 Missense_Mutation p.N158K 0.29 tolerated(0.5) benign(0.011) TCGA-EB-A41A-01 14 21488738 21488738 T C NDRG2 Missense_Mutation p.N158D 0.29 tolerated(0.45) benign(0.054) TCGA-EB-A41A-01 14 21490974 21490974 G A NDRG2 Intron 0.55 TCGA-EB-A41A-01 14 21860951 21860951 G A CHD8 Silent p.N2162N 0.42 TCGA-EB-A41A-01 14 22102213 22102213 G A OR10G2 Silent p.F262F 0.51 TCGA-EB-A41A-01 14 22315252 22315252 C T TRAV8-2 Nonsense_Mutation p.Q64* 0.34 TCGA-EB-A41A-01 14 22392586 22392586 G A TRAV14DV4 Missense_Mutation p.E37K 0.53 TCGA-EB-A41A-01 14 22447351 22447351 C T TRAV8-6 Missense_Mutation p.A111V 0.41 tolerated(0.1) possibly_damaging(0.819) TCGA-EB-A41A-01 14 22459025 22459025 C T TRAV16 Silent p.S59S 0.43 TCGA-EB-A41A-01 14 22564730 22564730 C T TRDV1 Missense_Mutation p.P61S 0.49 tolerated(0.18) benign(0.103) TCGA-EB-A41A-01 14 23244743 23244743 G T SLC7A7 Missense_Mutation p.F335L 0.44 deleterious(0.01) benign(0.309) TCGA-EB-A41A-01 14 23282435 23282435 G A SLC7A7 Missense_Mutation p.S58F 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 14 23862881 23862881 C T MYH6 Silent p.E974E 0.36 TCGA-EB-A41A-01 14 23887522 23887522 C T MYH7 Missense_Mutation p.E1356K 0.59 deleterious(0) probably_damaging(0.966) TCGA-EB-A41A-01 14 23894155 23894155 G A MYH7 Silent p.F834F 0.44 TCGA-EB-A41A-01 14 24791866 24791866 G A ADCY4 Silent p.F797F 0.33 TCGA-EB-A41A-01 14 24877634 24877634 G A NYNRIN Missense_Mutation p.R253K 0.43 tolerated_low_confidence(0.22) benign(0) TCGA-EB-A41A-01 14 28733793 28733793 G A BNIP3P1 RNA 0.43 TCGA-EB-A41A-01 14 28734115 28734115 T C BNIP3P1 RNA 0.42 TCGA-EB-A41A-01 14 31084664 31084664 C T G2E3 Missense_Mutation p.L595F 0.43 deleterious(0.05) possibly_damaging(0.762) TCGA-EB-A41A-01 14 31582641 31582641 G A HECTD1 Missense_Mutation p.S1969F 0.36 deleterious_low_confidence(0.03) benign(0.088) TCGA-EB-A41A-01 14 31782215 31782215 A G AL136418.1 3'Flank 0.41 TCGA-EB-A41A-01 14 33015923 33015923 G A AKAP6 Silent p.K688K 0.38 TCGA-EB-A41A-01 14 33242996 33242996 C T AKAP6 Missense_Mutation p.P1162L 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-EB-A41A-01 14 35576562 35576562 C T PPP2R3C Missense_Mutation p.R174K 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A41A-01 14 36982375 36982375 C T SFTA3 5'UTR 0.34 TCGA-EB-A41A-01 14 38679305 38679305 G A SSTR1 Silent p.G237G 0.48 TCGA-EB-A41A-01 14 39722057 39722057 C T MIA2 Missense_Mutation p.T558I 0.44 tolerated(0.06) benign(0.036) TCGA-EB-A41A-01 14 52741619 52741619 C T PTGDR Silent p.F339F 0.21 TCGA-EB-A41A-01 14 57960436 57960436 C T C14orf105 5'UTR 0.12 TCGA-EB-A41A-01 14 58055999 58055999 G A SLC35F4 Silent p.F210F 0.14 TCGA-EB-A41A-01 14 63174334 63174334 G A KCNH5 Silent p.P953P 0.33 TCGA-EB-A41A-01 14 63417050 63417050 G A KCNH5 Silent p.Y390Y 0.83 TCGA-EB-A41A-01 14 64935557 64935557 G A AKAP5 Missense_Mutation p.D149N 0.75 deleterious(0.02) benign(0.283) TCGA-EB-A41A-01 14 67525599 67525599 A T GPHN Intron 0.67 TCGA-EB-A41A-01 14 70478257 70478257 G T SMOC1 Missense_Mutation p.D305Y 0.73 deleterious(0) probably_damaging(0.942) TCGA-EB-A41A-01 14 70478281 70478281 C T SMOC1 Missense_Mutation p.P313S 0.74 tolerated(0.11) benign(0.019) TCGA-EB-A41A-01 14 70633522 70633522 G A SLC8A3 Missense_Mutation p.H540Y 0.65 deleterious(0.02) benign(0.104) TCGA-EB-A41A-01 14 70634318 70634318 G A SLC8A3 Silent p.I274I 0.78 TCGA-EB-A41A-01 14 70990735 70990735 G A ADAM20 Missense_Mutation p.P297L 0.77 tolerated(0.34) benign(0.077) TCGA-EB-A41A-01 14 71134378 71134378 C T TTC9 Silent p.Y168Y 0.77 TCGA-EB-A41A-01 14 72985117 72985117 G A RGS6 Missense_Mutation p.V384I 0.68 tolerated(0.12) benign(0.059) TCGA-EB-A41A-01 14 74876036 74876036 C T SYNDIG1L Missense_Mutation p.E138K 0.71 tolerated(0.06) benign(0.129) TCGA-EB-A41A-01 14 75248725 75248725 C T YLPM1 Missense_Mutation p.S660L 0.74 possibly_damaging(0.519) TCGA-EB-A41A-01 14 81743713 81743713 G A STON2 Missense_Mutation p.H648Y 0.71 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 14 92959883 92959883 C T SLC24A4 Missense_Mutation p.L594F 0.83 tolerated(0.1) benign(0.396) TCGA-EB-A41A-01 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.86 TCGA-EB-A41A-01 14 94152932 94152932 G A UNC79 Silent p.A2140A 0.78 TCGA-EB-A41A-01 14 94756607 94756607 G A SERPINA10 Silent p.A108A 0.81 TCGA-EB-A41A-01 15 101595186 101595187 - A LRRK1 Frame_Shift_Ins p.I1366Nfs*21 0.23 TCGA-EB-A41A-01 15 101862792 101862792 A G PCSK6 Missense_Mutation p.C799R 0.54 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 15 20170204 20170204 A G IGHV1OR15-9 Missense_Mutation p.L23P 0.44 deleterious(0.01) possibly_damaging(0.902) TCGA-EB-A41A-01 15 20657796 20657796 G A HERC2P3 RNA 0.42 TCGA-EB-A41A-01 15 20874882 20874882 C T NBEAP1 RNA 0.20 TCGA-EB-A41A-01 15 22368760 22368760 T C OR4M2 Missense_Mutation p.L62P 0.30 deleterious(0) probably_damaging(0.926) TCGA-EB-A41A-01 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.23 deleterious(0.01) benign(0.037) TCGA-EB-A41A-01 15 22382962 22382962 C T OR4N4 Missense_Mutation p.L164F 0.28 tolerated(0.26) probably_damaging(0.931) TCGA-EB-A41A-01 15 22383492 22383492 C T OR4N4 3'UTR 0.33 TCGA-EB-A41A-01 15 22473046 22473046 C T IGHV4OR15-8 Silent p.G75G 0.15 TCGA-EB-A41A-01 15 24921359 24921359 G A NPAP1 Silent p.R115R 0.48 TCGA-EB-A41A-01 15 25222160 25222160 G A SNRPN Missense_Mutation p.G135E 0.28 tolerated(0.07) possibly_damaging(0.788) TCGA-EB-A41A-01 15 25223622 25223622 C T SNRPN 3'UTR 0.42 TCGA-EB-A41A-01 15 25438320 25438320 C T SNORD115-11 3'Flank 0.30 TCGA-EB-A41A-01 15 25442614 25442614 G A SNORD115-14 3'Flank 0.39 TCGA-EB-A41A-01 15 25468401 25468401 G A SNORD115-29 RNA 0.37 TCGA-EB-A41A-01 15 26806142 26806142 C T GABRB3 Silent p.Q339Q 0.38 TCGA-EB-A41A-01 15 26825509 26825509 G A GABRB3 Silent p.I213I 0.45 TCGA-EB-A41A-01 15 28260046 28260046 G A OCA2 Missense_Mutation p.S307F 0.33 tolerated(0.47) benign(0.005) TCGA-EB-A41A-01 15 28519449 28519449 G A HERC2 Missense_Mutation p.S263F 0.53 benign(0) TCGA-EB-A41A-01 15 31341701 31341701 C A TRPM1 Missense_Mutation p.L500F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41A-01 15 37329107 37329107 G A MEIS2 Missense_Mutation p.P270S 0.42 tolerated(0.86) benign(0.017) TCGA-EB-A41A-01 15 39887644 39887644 G A THBS1 3'UTR 0.40 TCGA-EB-A41A-01 15 42374521 42374521 A G PLA2G4D Silent p.L247L 0.45 TCGA-EB-A41A-01 15 42734577 42734577 G A ZNF106 Missense_Mutation p.P1130S 0.36 tolerated(0.32) benign(0.282) TCGA-EB-A41A-01 15 43262760 43262760 G A UBR1 Missense_Mutation p.S1472F 0.39 tolerated(0.15) benign(0.245) TCGA-EB-A41A-01 15 43512939 43512939 C T EPB42 Missense_Mutation p.G29R 0.43 tolerated(0.08) benign(0.086) TCGA-EB-A41A-01 15 43814002 43814002 G A MAP1A Missense_Mutation p.E111K 0.34 probably_damaging(0.997) TCGA-EB-A41A-01 15 43816018 43816018 C T MAP1A Missense_Mutation p.P783S 0.41 benign(0.009) TCGA-EB-A41A-01 15 43816458 43816458 G A MAP1A Silent p.G929G 0.53 TCGA-EB-A41A-01 15 43831670 43831670 C T PPIP5K1 Nonsense_Mutation p.W1166* 0.50 TCGA-EB-A41A-01 15 45393034 45393034 G A DUOX2 Missense_Mutation p.S975F 0.42 tolerated(0.13) benign(0.153) TCGA-EB-A41A-01 15 50897100 50897100 T C TRPM7 Missense_Mutation p.Q984R 0.33 deleterious(0.02) possibly_damaging(0.771) TCGA-EB-A41A-01 15 51293367 51293367 T C AP4E1 Silent p.I1080I 0.43 TCGA-EB-A41A-01 15 51980459 51980459 G A SCG3 Missense_Mutation p.D134N 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A41A-01 15 52497298 52497298 C T MYO5C Silent p.L1528L 0.42 TCGA-EB-A41A-01 15 52561999 52561999 C T MYO5C Silent p.V297V 0.37 TCGA-EB-A41A-01 15 54305970 54305970 G A UNC13C Silent p.Q290Q 0.38 TCGA-EB-A41A-01 15 54307831 54307831 G A UNC13C Missense_Mutation p.E911K 0.38 tolerated_low_confidence(0.14) benign(0.011) TCGA-EB-A41A-01 15 54527271 54527271 C T UNC13C Missense_Mutation p.R1039C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A41A-01 15 54542603 54542603 G A UNC13C Missense_Mutation p.E1137K 0.51 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-EB-A41A-01 15 54916039 54916039 C T UNC13C Silent p.R2082R 0.37 TCGA-EB-A41A-01 15 64067393 64067393 G A HERC1 Missense_Mutation p.H144Y 0.42 benign(0.044) TCGA-EB-A41A-01 15 65347442 65347442 G A RASL12 Missense_Mutation p.S199F 0.42 deleterious(0.03) benign(0.009) TCGA-EB-A41A-01 15 65491422 65491422 G A CILP Missense_Mutation p.P401L 0.46 deleterious(0.01) benign(0.146) TCGA-EB-A41A-01 15 65682606 65682606 G A IGDCC4 Silent p.S765S 0.47 TCGA-EB-A41A-01 15 66030131 66030131 G A DENND4A Silent p.H318H 0.64 TCGA-EB-A41A-01 15 66030132 66030132 T A DENND4A Missense_Mutation p.H318L 0.64 deleterious(0) probably_damaging(0.959) TCGA-EB-A41A-01 15 68119358 68119358 G A SKOR1 Missense_Mutation p.G505S 0.35 tolerated_low_confidence(0.07) benign(0.015) TCGA-EB-A41A-01 15 68491924 68491924 G A CALML4 Missense_Mutation p.P87S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 15 69237976 69237976 C T SPESP1 Missense_Mutation p.H35Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 15 73552641 73552641 C T NEO1 Missense_Mutation p.L745F 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 15 73636111 73636111 C T HCN4 Missense_Mutation p.G275E 0.31 deleterious(0.03) possibly_damaging(0.472) TCGA-EB-A41A-01 15 74327562 74327562 C T PML Intron 0.21 TCGA-EB-A41A-01 15 74636221 74636221 G A CYP11A1 Silent p.P246P 0.47 TCGA-EB-A41A-01 15 75013768 75013768 G A CYP1A1 Silent p.I343I 0.38 TCGA-EB-A41A-01 15 76075489 76075489 G A RN7SL319P 5'Flank 0.48 TCGA-EB-A41A-01 15 77472554 77472554 G A PEAK1 Missense_Mutation p.S572L 0.46 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 15 79749087 79749087 C T KIAA1024 Missense_Mutation p.P200S 0.46 tolerated(1) benign(0.026) TCGA-EB-A41A-01 15 79750482 79750482 C T KIAA1024 Missense_Mutation p.H665Y 0.45 tolerated(0.1) benign(0.027) TCGA-EB-A41A-01 15 82563957 82563957 C T FAM154B Missense_Mutation p.P23S 0.36 deleterious(0.04) probably_damaging(0.979) TCGA-EB-A41A-01 15 83784653 83784653 G A TM6SF1 Missense_Mutation p.D85N 0.37 deleterious(0) probably_damaging(0.962) TCGA-EB-A41A-01 15 84581974 84581974 G A ADAMTSL3 Missense_Mutation p.G611S 0.27 deleterious(0.02) benign(0.19) TCGA-EB-A41A-01 15 84581975 84581975 G T ADAMTSL3 Missense_Mutation p.G611V 0.27 deleterious(0) probably_damaging(0.924) TCGA-EB-A41A-01 15 84694139 84694139 G A ADAMTSL3 Missense_Mutation p.R1536K 0.43 tolerated(0.35) benign(0.008) TCGA-EB-A41A-01 15 85447362 85447362 C T SLC28A1 Silent p.L166L 0.36 TCGA-EB-A41A-01 15 87217627 87217627 C T AGBL1 Silent p.L1015L 0.42 TCGA-EB-A41A-01 15 89417125 89417125 G A ACAN Silent p.K2462K 0.39 TCGA-EB-A41A-01 15 90784826 90784826 C T GDPGP1 Missense_Mutation p.P229L 0.31 tolerated(0.74) benign(0.201) TCGA-EB-A41A-01 15 90801341 90801341 A C TTLL13 Missense_Mutation p.E336A 0.43 deleterious(0.05) benign(0.312) TCGA-EB-A41A-01 15 91432603 91432603 C T FES Missense_Mutation p.R246W 0.40 deleterious(0.01) possibly_damaging(0.556) TCGA-EB-A41A-01 15 91433653 91433653 G A FES Missense_Mutation p.R420K 0.39 tolerated(0.48) benign(0.006) TCGA-EB-A41A-01 15 91835848 91835848 C T SV2B 3'UTR 0.44 TCGA-EB-A41A-01 15 97328464 97328464 A T SPATA8 3'UTR 0.27 TCGA-EB-A41A-01 15 99251235 99251235 A T IGF1R Missense_Mutation p.D180V 0.39 deleterious(0) probably_damaging(0.995) TCGA-EB-A41A-01 15 99671110 99671110 G A SYNM Missense_Mutation p.V848M 0.43 deleterious(0.01) possibly_damaging(0.799) TCGA-EB-A41A-01 16 1020924 1020924 C T LMF1 Silent p.K19K 0.50 TCGA-EB-A41A-01 16 10273882 10273882 C T GRIN2A Silent p.G129G 0.06 TCGA-EB-A41A-01 16 10524591 10524591 G A ATF7IP2 Silent p.L38L 0.53 TCGA-EB-A41A-01 16 11001114 11001114 G A CIITA Missense_Mutation p.E589K 0.30 tolerated(0.29) benign(0.138) TCGA-EB-A41A-01 16 112783 112783 A G RHBDF1 Missense_Mutation p.F262S 0.86 deleterious(0.04) probably_damaging(0.967) TCGA-EB-A41A-01 16 14015938 14015938 C T ERCC4 Silent p.R86R 0.29 TCGA-EB-A41A-01 16 14989556 14989556 G A NOMO1 3'UTR 0.31 TCGA-EB-A41A-01 16 16205434 16205434 C T ABCC1 Missense_Mutation p.S1025L 0.48 tolerated(0.81) benign(0.012) TCGA-EB-A41A-01 16 16248591 16248591 C T ABCC6 Missense_Mutation p.D1368N 0.43 deleterious(0) probably_damaging(0.99) TCGA-EB-A41A-01 16 16267245 16267245 G A ABCC6 Missense_Mutation p.P895S 0.32 tolerated(0.46) benign(0.002) TCGA-EB-A41A-01 16 16272806 16272806 C T ABCC6 Missense_Mutation p.G755E 0.48 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 16 16291952 16291952 C T ABCC6 Missense_Mutation p.E422K 0.33 deleterious(0) benign(0.41) TCGA-EB-A41A-01 16 19234463 19234463 C T SYT17 Nonsense_Mutation p.Q350* 0.31 TCGA-EB-A41A-01 16 1961847 1961847 C - HS3ST6 Frame_Shift_Del p.G227Efs*12 0.28 TCGA-EB-A41A-01 16 20423012 20423012 T G ACSM5 Splice_Site p.X68_splice 0.40 TCGA-EB-A41A-01 16 20566767 20566767 C T ACSM2B Missense_Mutation p.M140I 0.46 deleterious(0) possibly_damaging(0.743) TCGA-EB-A41A-01 16 20648554 20648554 G A ACSM1 Intron 0.40 TCGA-EB-A41A-01 16 20651861 20651861 G A ACSM1 Silent p.V346V 0.37 TCGA-EB-A41A-01 16 21053352 21053352 G A DNAH3 Silent p.L1545L 0.40 TCGA-EB-A41A-01 16 21065813 21065813 G A DNAH3 Nonsense_Mutation p.Q1323* 0.41 TCGA-EB-A41A-01 16 21080785 21080785 C T DNAH3 Missense_Mutation p.R1111K 0.35 tolerated(0.19) benign(0.032) TCGA-EB-A41A-01 16 21698901 21698901 G A OTOA Silent p.G189G 0.52 TCGA-EB-A41A-01 16 21771986 21771986 G A OTOA 3'UTR 0.31 TCGA-EB-A41A-01 16 23546328 23546328 C T EARS2 Missense_Mutation p.R280K 0.45 tolerated(1) benign(0.004) TCGA-EB-A41A-01 16 23641041 23641041 G A PALB2 Missense_Mutation p.P812S 0.44 tolerated(0.27) possibly_damaging(0.483) TCGA-EB-A41A-01 16 23721859 23721859 C T ERN2 Missense_Mutation p.E119K 0.41 tolerated(0.31) benign(0.002) TCGA-EB-A41A-01 16 24104109 24104109 C T PRKCB Intron 0.19 TCGA-EB-A41A-01 16 24105553 24105553 G A PRKCB Silent p.R252R 0.46 TCGA-EB-A41A-01 16 25258636 25258636 G A ZKSCAN2 Missense_Mutation p.S294F 0.36 tolerated(0.13) benign(0.099) TCGA-EB-A41A-01 16 26147551 26147551 G A HS3ST4 Silent p.Q451Q 0.23 TCGA-EB-A41A-01 16 27802764 27802764 G A GSG1L Missense_Mutation p.S308F 0.33 deleterious_low_confidence(0.04) benign(0.374) TCGA-EB-A41A-01 16 2815990 2815990 C T SRRM2 Missense_Mutation p.H1821Y 0.36 unknown(0) TCGA-EB-A41A-01 16 2871483 2871483 C T PRSS21 Silent p.I274I 0.29 TCGA-EB-A41A-01 16 28841951 28841951 C T ATXN2L Silent p.I350I 0.43 TCGA-EB-A41A-01 16 28975094 28975094 C T NFATC2IP Silent p.S390S 0.39 TCGA-EB-A41A-01 16 29872497 29872497 G A CDIPT Missense_Mutation p.P88S 0.35 deleterious(0) probably_damaging(0.967) TCGA-EB-A41A-01 16 29891289 29891289 G A SEZ6L2 Missense_Mutation p.S490L 0.39 tolerated(0.08) benign(0.052) TCGA-EB-A41A-01 16 30005464 30005464 C T HIRIP3 Silent p.E334E 0.48 TCGA-EB-A41A-01 16 30676391 30676391 C T FBRS Silent p.F533F 0.25 TCGA-EB-A41A-01 16 30735880 30735880 C T SRCAP Missense_Mutation p.P1712L 0.36 probably_damaging(0.981) TCGA-EB-A41A-01 16 30749732 30749732 C T SRCAP Missense_Mutation p.P2791S 0.46 unknown(0) TCGA-EB-A41A-01 16 312218 312218 C T ITFG3 Missense_Mutation p.P279S 0.77 tolerated(0.72) benign(0.377) TCGA-EB-A41A-01 16 31501778 31501778 G A SLC5A2 Silent p.P647P 0.12 TCGA-EB-A41A-01 16 3254288 3254288 C T OR1F1 Silent p.L14L 0.43 TCGA-EB-A41A-01 16 3293396 3293396 A G MEFV Silent p.N697N 0.38 TCGA-EB-A41A-01 16 3304686 3304686 C T MEFV Missense_Mutation p.E128K 0.35 tolerated(0.2) benign(0.04) TCGA-EB-A41A-01 16 3614950 3614950 C T NLRC3 Missense_Mutation p.D77N 0.36 deleterious(0.04) possibly_damaging(0.889) TCGA-EB-A41A-01 16 3639925 3639925 G A SLX4 Silent p.F1238F 0.35 TCGA-EB-A41A-01 16 426433 426433 G A TMEM8A Silent p.T309T 0.25 TCGA-EB-A41A-01 16 4383380 4383380 G A GLIS2 Missense_Mutation p.V69M 0.41 tolerated_low_confidence(0.11) benign(0.088) TCGA-EB-A41A-01 16 46781710 46781710 G A MYLK3 Silent p.F132F 0.40 TCGA-EB-A41A-01 16 47162359 47162359 G A NETO2 Missense_Mutation p.R120C 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 16 48125114 48125114 C A ABCC12 Nonsense_Mutation p.G1068* 0.41 TCGA-EB-A41A-01 16 48142399 48142399 C T ABCC12 Missense_Mutation p.G775R 0.38 deleterious(0) probably_damaging(0.991) TCGA-EB-A41A-01 16 48249190 48249190 G A ABCC11 Silent p.I339I 0.44 TCGA-EB-A41A-01 16 4926995 4926995 C T UBN1 Missense_Mutation p.P1050S 0.40 tolerated(1) benign(0.008) TCGA-EB-A41A-01 16 4945296 4945296 G A PPL Missense_Mutation p.P403L 0.14 deleterious(0) possibly_damaging(0.843) TCGA-EB-A41A-01 16 49669613 49669613 G A ZNF423 Silent p.T1150T 0.39 TCGA-EB-A41A-01 16 49670610 49670610 G A ZNF423 Missense_Mutation p.A818V 0.16 tolerated(0.37) benign(0.224) TCGA-EB-A41A-01 16 49670840 49670840 C T ZNF423 Silent p.V741V 0.37 TCGA-EB-A41A-01 16 53674968 53674968 C T RPGRIP1L Missense_Mutation p.D979N 0.40 tolerated(0.09) probably_damaging(0.987) TCGA-EB-A41A-01 16 55562320 55562320 G A LPCAT2 Missense_Mutation p.G115S 0.41 tolerated(0.48) benign(0.017) TCGA-EB-A41A-01 16 55730180 55730180 C T SLC6A2 Silent p.T397T 0.39 TCGA-EB-A41A-01 16 56624826 56624826 G A MT3 Missense_Mutation p.E58K 0.31 tolerated_low_confidence(0.8) unknown(0) TCGA-EB-A41A-01 16 56906298 56906298 C T SLC12A3 Silent p.S296S 0.33 TCGA-EB-A41A-01 16 57095528 57095528 A G NLRC5 Splice_Site p.X1357_splice 0.41 TCGA-EB-A41A-01 16 57417073 57417073 G A CX3CL1 3'UTR 0.38 TCGA-EB-A41A-01 16 57741518 57741518 C T CCDC135 Silent p.F335F 0.42 TCGA-EB-A41A-01 16 599095 599095 C T CAPN15 Missense_Mutation p.P518S 0.77 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 16 61687772 61687772 G A CDH8 Missense_Mutation p.P714S 0.51 tolerated(0.45) benign(0.001) TCGA-EB-A41A-01 16 64984768 64984768 C T CDH11 Missense_Mutation p.G599E 0.42 deleterious(0.02) benign(0.004) TCGA-EB-A41A-01 16 64984769 64984769 C T CDH11 Missense_Mutation p.G599R 0.43 deleterious(0.02) benign(0.326) TCGA-EB-A41A-01 16 66429990 66429990 G A CDH5 Missense_Mutation p.G416S 0.47 tolerated(0.1) possibly_damaging(0.72) TCGA-EB-A41A-01 16 66919119 66919119 C T PDP2 Missense_Mutation p.A311V 0.41 tolerated(0.06) benign(0.247) TCGA-EB-A41A-01 16 67375966 67375966 G A LRRC36 Silent p.R59R 0.40 TCGA-EB-A41A-01 16 67694231 67694231 G A ACD Missense_Mutation p.L51F 0.31 tolerated_low_confidence(0.07) benign(0.047) TCGA-EB-A41A-01 16 67912304 67912304 C T EDC4 Missense_Mutation p.S349F 0.42 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 16 68021761 68021761 C T DPEP2 Silent p.V400V 0.35 TCGA-EB-A41A-01 16 68405587 68405587 C T SMPD3 Silent p.Q166Q 0.39 TCGA-EB-A41A-01 16 69199508 69199508 G T CIRH1A Intron 0.25 TCGA-EB-A41A-01 16 69381718 69381718 T C TMED6 Silent p.Q154Q 0.43 TCGA-EB-A41A-01 16 69458751 69458751 C T CYB5B Silent p.F55F 0.42 TCGA-EB-A41A-01 16 70162741 70162741 C T PDPR Missense_Mutation p.S139F 0.20 tolerated(0.35) possibly_damaging(0.879) TCGA-EB-A41A-01 16 70219854 70219854 C T CLEC18C Silent p.T426T 0.23 TCGA-EB-A41A-01 16 70884537 70884537 G A HYDIN Silent p.F4155F 0.48 TCGA-EB-A41A-01 16 70917840 70917840 G A HYDIN Missense_Mutation p.A3321V 0.48 possibly_damaging(0.866) TCGA-EB-A41A-01 16 70954501 70954501 C T HYDIN Missense_Mutation p.G2593E 0.41 benign(0.001) TCGA-EB-A41A-01 16 70954537 70954537 C T HYDIN Nonsense_Mutation p.W2581* 0.42 TCGA-EB-A41A-01 16 71149676 71149676 G A HYDIN Missense_Mutation p.S417L 0.48 probably_damaging(0.948) TCGA-EB-A41A-01 16 71186578 71186578 G A HYDIN Silent p.I275I 0.27 TCGA-EB-A41A-01 16 71186680 71186680 G A HYDIN Silent p.F241F 0.46 TCGA-EB-A41A-01 16 71212852 71212852 C T HYDIN Silent p.L120L 0.43 TCGA-EB-A41A-01 16 71570877 71570877 G A CHST4 Silent p.R99R 0.48 TCGA-EB-A41A-01 16 71571180 71571180 C T CHST4 Silent p.I200I 0.39 TCGA-EB-A41A-01 16 71663283 71663283 G A MARVELD3 Missense_Mutation p.E161K 0.32 deleterious(0.03) benign(0.21) TCGA-EB-A41A-01 16 71663352 71663352 G A MARVELD3 Missense_Mutation p.G184R 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 16 72170394 72170394 G A PMFBP1 Nonsense_Mutation p.Q386* 0.52 TCGA-EB-A41A-01 16 72184525 72184525 G A PMFBP1 Silent p.L206L 0.41 TCGA-EB-A41A-01 16 77325347 77325347 C T ADAMTS18 Missense_Mutation p.R1073K 0.44 tolerated(0.12) benign(0.044) TCGA-EB-A41A-01 16 77465432 77465432 C T ADAMTS18 Silent p.R85R 0.37 TCGA-EB-A41A-01 16 77465433 77465433 C T ADAMTS18 Missense_Mutation p.R85K 0.37 deleterious(0.02) probably_damaging(0.941) TCGA-EB-A41A-01 16 78005753 78005753 G A VAT1L Missense_Mutation p.E362K 0.40 tolerated(0.05) possibly_damaging(0.906) TCGA-EB-A41A-01 16 78005774 78005774 G A VAT1L Missense_Mutation p.D369N 0.44 deleterious(0.04) possibly_damaging(0.877) TCGA-EB-A41A-01 16 81224305 81224305 G A PKD1L2 Nonsense_Mutation p.Q74* 0.40 TCGA-EB-A41A-01 16 819555 819555 C T MSLNL Missense_Mutation p.G1012E 0.89 possibly_damaging(0.883) TCGA-EB-A41A-01 16 83065799 83065799 G A CDH13 Silent p.G161G 0.42 TCGA-EB-A41A-01 16 83378568 83378568 G A CDH13 Silent p.R293R 0.41 TCGA-EB-A41A-01 16 84203512 84203512 G A DNAAF1 Missense_Mutation p.E360K 0.37 tolerated(0.21) benign(0.039) TCGA-EB-A41A-01 16 84806183 84806183 C T USP10 Missense_Mutation p.P679S 0.39 deleterious(0.02) probably_damaging(1) TCGA-EB-A41A-01 16 984382 984382 G A LMF1 Intron 0.94 TCGA-EB-A41A-01 17 10346787 10346787 C T MYH4 Missense_Mutation p.E1909K 0.42 deleterious(0) possibly_damaging(0.803) TCGA-EB-A41A-01 17 10359133 10359133 G A MYH4 Missense_Mutation p.P685L 0.39 deleterious(0) probably_damaging(0.931) TCGA-EB-A41A-01 17 10400485 10400485 C T MYH1 Silent p.Q1519Q 0.34 TCGA-EB-A41A-01 17 10401153 10401153 C T MYH1 Silent p.T1421T 0.35 TCGA-EB-A41A-01 17 10429162 10429162 C T MYH2 Missense_Mutation p.E1407K 0.37 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 17 10447315 10447315 C T MYH2 Silent p.G184G 0.42 TCGA-EB-A41A-01 17 10545581 10545581 G A MYH3 Silent p.F645F 0.35 TCGA-EB-A41A-01 17 11554538 11554538 G A DNAH9 Missense_Mutation p.M750I 0.47 benign(0.002) TCGA-EB-A41A-01 17 11592972 11592972 C T DNAH9 Missense_Mutation p.S1278F 0.31 benign(0.04) TCGA-EB-A41A-01 17 11737961 11737961 G A DNAH9 Missense_Mutation p.D3085N 0.41 benign(0.049) TCGA-EB-A41A-01 17 12656204 12656204 G A MYOCD Nonsense_Mutation p.W533* 0.41 TCGA-EB-A41A-01 17 15967405 15967405 G A NCOR1 Missense_Mutation p.S1733F 0.39 benign(0.398) TCGA-EB-A41A-01 17 16691384 16691384 C T CCDC144A 3'UTR 0.25 TCGA-EB-A41A-01 17 16843819 16843819 G A TNFRSF13B Missense_Mutation p.P151L 0.41 tolerated(0.29) benign(0.002) TCGA-EB-A41A-01 17 1684648 1684648 G A SMYD4 Nonsense_Mutation p.Q783* 0.39 TCGA-EB-A41A-01 17 17039558 17039558 T C MPRIP Missense_Mutation p.V177A 0.41 tolerated(0.15) probably_damaging(0.997) TCGA-EB-A41A-01 17 17715992 17715992 C T SREBF1 Missense_Mutation p.D1160N 0.48 deleterious(0) probably_damaging(0.944) TCGA-EB-A41A-01 17 18040898 18040898 G A MYO15A Missense_Mutation p.D1594N 0.26 unknown(0) TCGA-EB-A41A-01 17 19316928 19316928 C T RNF112 Silent p.S253S 0.22 TCGA-EB-A41A-01 17 19646650 19646650 C T ALDH3A1 Missense_Mutation p.E97K 0.38 tolerated(0.17) benign(0.405) TCGA-EB-A41A-01 17 2594038 2594038 C T CLUH Silent p.V1260V 0.50 TCGA-EB-A41A-01 17 25976025 25976025 G A LGALS9 3'UTR 0.45 TCGA-EB-A41A-01 17 2605261 2605261 A G CLUH Missense_Mutation p.V151A 0.38 tolerated(0.12) benign(0.038) TCGA-EB-A41A-01 17 26968909 26968909 G A KIAA0100 Missense_Mutation p.S255L 0.09 tolerated(0.07) benign(0.001) TCGA-EB-A41A-01 17 27239712 27239712 G A PHF12 Missense_Mutation p.P626L 0.38 deleterious(0.01) benign(0.039) TCGA-EB-A41A-01 17 27284429 27284429 G A SEZ6 Missense_Mutation p.L811F 0.43 deleterious(0) possibly_damaging(0.903) TCGA-EB-A41A-01 17 28512340 28512340 T C NSRP1 Missense_Mutation p.V442A 0.48 tolerated_low_confidence(0.81) benign(0.002) TCGA-EB-A41A-01 17 29486111 29486111 G A NF1 Silent p.G96G 0.36 TCGA-EB-A41A-01 17 29533315 29533315 C T NF1 Nonsense_Mutation p.R440* 0.39 TCGA-EB-A41A-01 17 29679433 29679433 G A NF1 Splice_Site p.X2539_splice 0.40 TCGA-EB-A41A-01 17 3029915 3029915 G A OR1G1 Missense_Mutation p.H311Y 0.51 tolerated(1) benign(0.068) TCGA-EB-A41A-01 17 3181392 3181392 C T OR3A2 Missense_Mutation p.D280N 0.48 deleterious(0.01) possibly_damaging(0.517) TCGA-EB-A41A-01 17 32955605 32955605 C T TMEM132E Missense_Mutation p.T251I 0.43 deleterious(0.02) possibly_damaging(0.648) TCGA-EB-A41A-01 17 3324422 3324422 C T OR3A3 Silent p.Y187Y 0.32 TCGA-EB-A41A-01 17 33513459 33513459 G A UNC45B Missense_Mutation p.E893K 0.44 deleterious(0) possibly_damaging(0.844) TCGA-EB-A41A-01 17 33680441 33680441 G A SLFN11 Silent p.I612I 0.39 TCGA-EB-A41A-01 17 3397738 3397738 C T ASPA Silent p.I243I 0.41 TCGA-EB-A41A-01 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.16 TCGA-EB-A41A-01 17 34852062 34852062 G T MYO19 3'UTR 0.38 TCGA-EB-A41A-01 17 3539558 3539558 A T SHPK 5'UTR 0.60 TCGA-EB-A41A-01 17 35614625 35614625 G A ACACA Missense_Mutation p.S609L 0.45 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A41A-01 17 3595136 3595136 C T P2RX5 Intron 0.50 TCGA-EB-A41A-01 17 36047316 36047316 G A HNF1B 3'UTR 0.45 TCGA-EB-A41A-01 17 36093780 36093780 C T HNF1B Missense_Mutation p.M193I 0.33 tolerated(0.21) benign(0) TCGA-EB-A41A-01 17 36214821 36214821 C T YWHAEP7 RNA 0.73 TCGA-EB-A41A-01 17 36353744 36353744 A C RP11-1407O15.2 Missense_Mutation p.L373V 0.13 TCGA-EB-A41A-01 17 36486182 36486182 C T GPR179 Silent p.A1090A 0.39 TCGA-EB-A41A-01 17 37340059 37340059 G T CACNB1 Silent p.V319V 0.53 TCGA-EB-A41A-01 17 37627970 37627970 C T CDK12 Missense_Mutation p.P629S 0.46 probably_damaging(0.998) TCGA-EB-A41A-01 17 38183281 38183281 G A MED24 Silent p.L513L 0.56 TCGA-EB-A41A-01 17 38555128 38555128 G A TOP2A Missense_Mutation p.S1117F 0.38 deleterious(0) possibly_damaging(0.797) TCGA-EB-A41A-01 17 38644855 38644855 C T TNS4 Missense_Mutation p.S269N 0.42 deleterious(0.02) benign(0.025) TCGA-EB-A41A-01 17 38978632 38978632 C T KRT10 Missense_Mutation p.G69D 0.41 deleterious_low_confidence(0.02) unknown(0) TCGA-EB-A41A-01 17 39084581 39084581 G A KRT23 Missense_Mutation p.P277L 0.44 tolerated(0.11) benign(0.133) TCGA-EB-A41A-01 17 39412185 39412185 C T KRTAP9-9 3'UTR 0.51 TCGA-EB-A41A-01 17 39506834 39506834 G A KRT33A Silent p.F62F 0.31 TCGA-EB-A41A-01 17 39521174 39521174 G A KRT33B Silent p.I318I 0.40 TCGA-EB-A41A-01 17 39671853 39671853 G A KRT15 Missense_Mutation p.A373V 0.38 tolerated(0.11) benign(0.081) TCGA-EB-A41A-01 17 39967278 39967278 G A LEPREL4 Silent p.F208F 0.45 TCGA-EB-A41A-01 17 4016064 4016064 G A ZZEF1 Missense_Mutation p.S302F 0.33 deleterious(0) probably_damaging(0.992) TCGA-EB-A41A-01 17 41143388 41143388 C T RUNDC1 Silent p.S499S 0.38 TCGA-EB-A41A-01 17 41245731 41245731 G A BRCA1 Missense_Mutation p.P606L 0.36 tolerated(0.06) benign(0.093) TCGA-EB-A41A-01 17 41585285 41585285 C T DHX8 Nonsense_Mutation p.R740* 0.43 TCGA-EB-A41A-01 17 42165061 42165061 G A HDAC5 Missense_Mutation p.L536F 0.35 tolerated(0.15) probably_damaging(0.994) TCGA-EB-A41A-01 17 42336556 42336556 G A SLC4A1 Missense_Mutation p.A284V 0.53 deleterious(0) probably_damaging(0.939) TCGA-EB-A41A-01 17 42925351 42925351 G A HIGD1B 5'UTR 0.31 TCGA-EB-A41A-01 17 4349375 4349375 C T SPNS3 Silent p.I145I 0.40 TCGA-EB-A41A-01 17 45012442 45012442 C T GOSR2 Silent p.S128S 0.40 TCGA-EB-A41A-01 17 45568400 45568400 G A MRPL45P2 RNA 0.38 TCGA-EB-A41A-01 17 4576290 4576290 G A PELP1 Missense_Mutation p.H666Y 0.42 benign(0.152) TCGA-EB-A41A-01 17 46627660 46627660 C T HOXB3 3'UTR 0.32 TCGA-EB-A41A-01 17 46805399 46805399 C T HOXB13 Missense_Mutation p.G186E 0.41 deleterious(0.02) benign(0.272) TCGA-EB-A41A-01 17 47119686 47119686 G A IGF2BP1 Missense_Mutation p.E342K 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A41A-01 17 47233932 47233932 C T B4GALNT2 Silent p.L215L 0.39 TCGA-EB-A41A-01 17 47583863 47583863 C T NGFR Silent p.S137S 0.29 TCGA-EB-A41A-01 17 4848235 4848235 C T RNF167 Missense_Mutation p.P326L 0.51 deleterious(0.04) possibly_damaging(0.878) TCGA-EB-A41A-01 17 4858424 4858424 G A ENO3 Missense_Mutation p.E167K 0.29 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EB-A41A-01 17 48746762 48746762 T G ABCC3 Missense_Mutation p.L705R 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 17 4883899 4883899 G A CAMTA2 Missense_Mutation p.H263Y 0.44 deleterious(0) probably_damaging(0.956) TCGA-EB-A41A-01 17 50235182 50235182 G A CA10 5'UTR 0.43 TCGA-EB-A41A-01 17 5298237 5298237 G A NUP88 Silent p.I452I 0.44 TCGA-EB-A41A-01 17 5308430 5308430 C T NUP88 Missense_Mutation p.G331R 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 17 5436295 5436295 G A NLRP1 Missense_Mutation p.S1048F 0.19 tolerated(0.06) benign(0.027) TCGA-EB-A41A-01 17 54554962 54554962 G A ANKFN1 Silent p.K632K 0.39 TCGA-EB-A41A-01 17 56232561 56232561 G A OR4D1 Missense_Mutation p.G16E 0.39 tolerated(0.06) possibly_damaging(0.847) TCGA-EB-A41A-01 17 56291629 56291629 G A MKS1 Missense_Mutation p.P212L 0.36 deleterious(0.01) possibly_damaging(0.735) TCGA-EB-A41A-01 17 56589763 56589763 G T MTMR4 Missense_Mutation p.D66E 0.33 tolerated(0.77) benign(0.37) TCGA-EB-A41A-01 17 57851153 57851153 C T VMP1 Silent p.F207F 0.41 TCGA-EB-A41A-01 17 58292111 58292111 G A USP32 Missense_Mutation p.P631L 0.12 deleterious(0.02) possibly_damaging(0.534) TCGA-EB-A41A-01 17 58292112 58292112 G A USP32 Missense_Mutation p.P631S 0.12 tolerated(0.12) possibly_damaging(0.45) TCGA-EB-A41A-01 17 59560639 59560639 G A TBX4 Missense_Mutation p.G467E 0.35 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EB-A41A-01 17 5984130 5984130 C T WSCD1 Missense_Mutation p.P51L 0.25 tolerated(0.21) benign(0.012) TCGA-EB-A41A-01 17 60779046 60779046 C T MARCH10 3'UTR 0.40 TCGA-EB-A41A-01 17 61607835 61607835 G A KCNH6 Missense_Mutation p.E203K 0.31 tolerated(0.1) possibly_damaging(0.642) TCGA-EB-A41A-01 17 62473925 62473925 T C POLG2 3'UTR 0.57 TCGA-EB-A41A-01 17 62796158 62796158 G A PLEKHM1P RNA 0.37 TCGA-EB-A41A-01 17 62854903 62854903 G A LRRC37A3 Silent p.L1601L 0.31 TCGA-EB-A41A-01 17 6331746 6331746 G A AIPL1 Silent p.H119H 0.29 TCGA-EB-A41A-01 17 6381970 6381970 G A PITPNM3 Missense_Mutation p.S225F 0.26 deleterious(0) possibly_damaging(0.897) TCGA-EB-A41A-01 17 65021106 65021106 C T CACNG4 Silent p.F145F 0.47 TCGA-EB-A41A-01 17 6683376 6683376 C T FBXO39 Silent p.F63F 0.35 TCGA-EB-A41A-01 17 6683799 6683799 C T FBXO39 Silent p.F204F 0.41 TCGA-EB-A41A-01 17 685604 685604 C T RNMTL1 5'UTR 0.48 TCGA-EB-A41A-01 17 6982078 6982078 C T CLEC10A Silent p.Q18Q 0.25 TCGA-EB-A41A-01 17 71426727 71426727 G A SDK2 Silent p.P502P 0.32 TCGA-EB-A41A-01 17 72363832 72363832 G A GPR142 Missense_Mutation p.G63E 0.31 tolerated_low_confidence(0.28) benign(0) TCGA-EB-A41A-01 17 72363833 72363833 G A GPR142 Silent p.G63G 0.31 TCGA-EB-A41A-01 17 72436422 72436422 C T GPRC5C Silent p.I214I 0.53 TCGA-EB-A41A-01 17 72739294 72739294 G A RAB37 Silent p.R96R 0.39 TCGA-EB-A41A-01 17 7329988 7329988 G A C17orf74 Silent p.L226L 0.46 TCGA-EB-A41A-01 17 7359208 7359208 C T CHRNB1 Missense_Mutation p.S438F 0.41 deleterious(0) possibly_damaging(0.811) TCGA-EB-A41A-01 17 73745107 73745107 C T ITGB4 Silent p.T1099T 0.29 TCGA-EB-A41A-01 17 73753676 73753676 C A ITGB4 3'UTR 0.49 TCGA-EB-A41A-01 17 73832457 73832457 G A UNC13D Missense_Mutation p.T451I 0.33 tolerated(0.08) benign(0.102) TCGA-EB-A41A-01 17 73870539 73870539 G A TRIM47 3'UTR 0.44 TCGA-EB-A41A-01 17 74011410 74011410 C T EVPL Silent p.Q642Q 0.56 TCGA-EB-A41A-01 17 74071051 74071051 C T GALR2 Silent p.P29P 0.53 TCGA-EB-A41A-01 17 74396598 74396598 T C UBE2O Missense_Mutation p.T310A 0.52 tolerated(0.7) benign(0.031) TCGA-EB-A41A-01 17 75398220 75398220 C T SEPT9 Silent p.L52L 0.40 TCGA-EB-A41A-01 17 7578371 7578371 C T TP53 Missense_Mutation p.G187S 0.33 tolerated(0.21) possibly_damaging(0.528) TCGA-EB-A41A-01 17 76451887 76451887 G A DNAH17 Missense_Mutation p.R3323C 0.36 probably_damaging(0.999) TCGA-EB-A41A-01 17 76482090 76482090 C T DNAH17 Nonsense_Mutation p.W2395* 0.53 TCGA-EB-A41A-01 17 7671494 7671494 G A DNAH2 Missense_Mutation p.E1284K 0.41 probably_damaging(0.911) TCGA-EB-A41A-01 17 7720897 7720897 C T DNAH2 Missense_Mutation p.P3347S 0.49 benign(0.028) TCGA-EB-A41A-01 17 7736216 7736216 G A DNAH2 Silent p.V4316V 0.40 TCGA-EB-A41A-01 17 78599592 78599592 C T RPTOR Silent p.I88I 0.58 TCGA-EB-A41A-01 17 7915874 7915874 G A GUCY2D Missense_Mutation p.G688E 0.42 tolerated(0.41) possibly_damaging(0.486) TCGA-EB-A41A-01 17 79408979 79408979 C T RP11-1055B8.7 Missense_Mutation p.R202W 0.18 probably_damaging(0.997) TCGA-EB-A41A-01 17 80726295 80726295 G A TBCD Splice_Site p.X146_splice 0.40 TCGA-EB-A41A-01 17 8132758 8132758 G A CTC1 Silent p.P1006P 0.50 TCGA-EB-A41A-01 17 8222142 8222142 G A ARHGEF15 Silent p.G649G 0.44 TCGA-EB-A41A-01 17 8656492 8656492 G A SPDYE4 Silent p.H226H 0.31 TCGA-EB-A41A-01 17 9764483 9764483 G A GLP2R Nonsense_Mutation p.W318* 0.39 TCGA-EB-A41A-01 18 12351356 12351356 G A AFG3L2 Silent p.L459L 0.49 TCGA-EB-A41A-01 18 12859247 12859247 G A PTPN2 Nonsense_Mutation p.R26* 0.50 TCGA-EB-A41A-01 18 13049821 13049821 G A CEP192 Missense_Mutation p.S983N 0.56 deleterious(0) probably_damaging(0.957) TCGA-EB-A41A-01 18 13092489 13092489 C T CEP192 Missense_Mutation p.L2073F 0.51 tolerated(0.35) benign(0.126) TCGA-EB-A41A-01 18 13387668 13387668 C T LDLRAD4 5'UTR 0.28 TCGA-EB-A41A-01 18 14105516 14105516 G A ZNF519 Silent p.I341I 0.25 TCGA-EB-A41A-01 18 22048792 22048792 C T HRH4 Silent p.F78F 0.24 TCGA-EB-A41A-01 18 22804879 22804879 C T ZNF521 Silent p.E1001E 0.58 TCGA-EB-A41A-01 18 28574047 28574047 C T DSC3 3'UTR 0.21 TCGA-EB-A41A-01 18 28604431 28604431 C T DSC3 Missense_Mutation p.G220E 0.19 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 18 28711771 28711771 T C DSC1 Missense_Mutation p.N758S 0.26 tolerated(0.17) benign(0.181) TCGA-EB-A41A-01 18 28712366 28712366 G A DSC1 Intron 0.47 TCGA-EB-A41A-01 18 28719764 28719764 G A DSC1 Missense_Mutation p.S537F 0.55 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 18 28736037 28736037 G A DSC1 Missense_Mutation p.S147L 0.60 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 18 28935384 28935384 G A DSG1 3'UTR 0.48 TCGA-EB-A41A-01 18 29041314 29041314 G A DSG3 Missense_Mutation p.G313E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 18 29104445 29104445 G A DSG2 Missense_Mutation p.R242K 0.67 tolerated(0.9) benign(0.023) TCGA-EB-A41A-01 18 29848706 29848706 G A GAREM Missense_Mutation p.P587S 0.61 tolerated(0.57) benign(0.356) TCGA-EB-A41A-01 18 29867604 29867604 G A GAREM Missense_Mutation p.P319L 0.61 tolerated(0.79) benign(0.005) TCGA-EB-A41A-01 18 30093396 30093396 C T WBP11P1 RNA 0.62 TCGA-EB-A41A-01 18 30254666 30254666 G A KLHL14 Missense_Mutation p.A614V 0.54 deleterious(0.01) benign(0.086) TCGA-EB-A41A-01 18 31318739 31318739 G A ASXL3 Silent p.E457E 0.61 TCGA-EB-A41A-01 18 31320012 31320012 G A ASXL3 Missense_Mutation p.E882K 0.60 benign(0.345) TCGA-EB-A41A-01 18 31325484 31325484 G A ASXL3 Missense_Mutation p.S1891N 0.65 benign(0.216) TCGA-EB-A41A-01 18 44261958 44261958 C T ST8SIA5 Silent p.V213V 0.65 TCGA-EB-A41A-01 18 44561172 44561172 C T TCEB3B Missense_Mutation p.R155K 0.24 tolerated(0.21) probably_damaging(0.952) TCGA-EB-A41A-01 18 46284667 46284667 T C CTIF Missense_Mutation p.V321A 0.28 tolerated_low_confidence(0.6) benign(0.001) TCGA-EB-A41A-01 18 47405374 47405374 C T MYO5B Missense_Mutation p.E1073K 0.45 deleterious(0.02) possibly_damaging(0.694) TCGA-EB-A41A-01 18 47918471 47918471 C T SKA1 Missense_Mutation p.R208C 0.25 tolerated(0.1) benign(0.028) TCGA-EB-A41A-01 18 48444529 48444529 G A ME2 Missense_Mutation p.R227H 0.51 deleterious(0.04) possibly_damaging(0.906) TCGA-EB-A41A-01 18 50929253 50929253 G A DCC Silent p.G975G 0.30 TCGA-EB-A41A-01 18 52556612 52556612 G A RAB27B Missense_Mutation p.E209K 0.53 tolerated(0.32) benign(0.002) TCGA-EB-A41A-01 18 52924566 52924566 C T TCF4 Missense_Mutation p.E478K 0.61 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 18 55282936 55282936 C T NARS Silent p.K93K 0.61 TCGA-EB-A41A-01 18 61324524 61324524 C T SERPINB3 Missense_Mutation p.E198K 0.56 tolerated(0.15) benign(0.285) TCGA-EB-A41A-01 18 61328379 61328379 C T SERPINB3 Silent p.E24E 0.59 TCGA-EB-A41A-01 18 61377522 61377522 C T SERPINB11 Missense_Mutation p.S32L 0.57 deleterious(0.01) benign(0.005) TCGA-EB-A41A-01 18 6138254 6138254 G A L3MBTL4 Missense_Mutation p.P380S 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A41A-01 18 61621669 61621669 G A HMSD Missense_Mutation p.E34K 0.32 tolerated(0.56) benign(0.065) TCGA-EB-A41A-01 18 63530262 63530262 G A CDH7 Intron 0.48 TCGA-EB-A41A-01 18 66504328 66504328 C T CCDC102B Nonsense_Mutation p.R110* 0.34 TCGA-EB-A41A-01 18 66564590 66564590 G A CCDC102B Silent p.K396K 0.29 TCGA-EB-A41A-01 18 67425032 67425032 C T DOK6 Missense_Mutation p.S260L 0.06 tolerated(0.09) benign(0.025) TCGA-EB-A41A-01 18 76753621 76753621 C T SALL3 Missense_Mutation p.P544S 0.30 tolerated(0.12) possibly_damaging(0.564) TCGA-EB-A41A-01 18 8798261 8798261 C T SOGA2 Missense_Mutation p.T803I 0.34 tolerated(0.07) benign(0.019) TCGA-EB-A41A-01 18 9254895 9254895 C T ANKRD12 Missense_Mutation p.P544S 0.38 deleterious_low_confidence(0.04) benign(0.208) TCGA-EB-A41A-01 19 1005509 1005509 G A GRIN3B Missense_Mutation p.G670E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 19 10127765 10127765 G A RDH8 Missense_Mutation p.E66K 0.56 tolerated(0.13) benign(0.06) TCGA-EB-A41A-01 19 10397803 10397803 C T ICAM4 Missense_Mutation p.L39F 0.25 tolerated_low_confidence(0.19) benign(0.272) TCGA-EB-A41A-01 19 110712 110712 G A OR4F17 Missense_Mutation p.D12N 0.12 tolerated(1) benign(0.001) TCGA-EB-A41A-01 19 11468409 11468409 C T DKFZP761J1410 Silent p.F20F 0.38 TCGA-EB-A41A-01 19 11545695 11545695 C T CCDC151 Nonsense_Mutation p.W48* 0.44 TCGA-EB-A41A-01 19 11891339 11891339 C T ZNF441 Missense_Mutation p.P234S 0.44 tolerated(0.86) benign(0.022) TCGA-EB-A41A-01 19 12089301 12089301 C T ZNF763 Nonsense_Mutation p.R191* 0.40 TCGA-EB-A41A-01 19 12223031 12223031 C T ZNF788 Silent p.P223P 0.33 TCGA-EB-A41A-01 19 1231251 1231251 G - C19orf26 Frame_Shift_Del p.Q335Sfs*55 0.34 TCGA-EB-A41A-01 19 14705449 14705449 G A CLEC17A Missense_Mutation p.E106K 0.38 tolerated(1) benign(0) TCGA-EB-A41A-01 19 1556843 1556843 G A MEX3D Silent p.I225I 0.25 TCGA-EB-A41A-01 19 15575055 15575055 G A RASAL3 Missense_Mutation p.R39C 0.33 deleterious(0) benign(0.069) TCGA-EB-A41A-01 19 15587196 15587196 C T PGLYRP2 Silent p.K95K 0.44 TCGA-EB-A41A-01 19 15733127 15733127 C T CYP4F8 Intron 0.37 TCGA-EB-A41A-01 19 15740024 15740024 C T CYP4F8 RNA 0.35 TCGA-EB-A41A-01 19 15838877 15838877 C T OR10H2 Silent p.S8S 0.35 TCGA-EB-A41A-01 19 16008305 16008305 G C CYP4F2 Nonsense_Mutation p.Y39* 0.22 TCGA-EB-A41A-01 19 16872934 16872934 G A NWD1 Silent p.L706L 0.34 TCGA-EB-A41A-01 19 17122432 17122432 C T CPAMD8 Missense_Mutation p.D182N 0.30 deleterious(0.02) probably_damaging(1) TCGA-EB-A41A-01 19 17720746 17720746 C T UNC13A Intron 0.35 TCGA-EB-A41A-01 19 17720841 17720841 G A UNC13A Silent p.I1573I 0.46 TCGA-EB-A41A-01 19 18099283 18099283 G A KCNN1 Silent p.K373K 0.35 TCGA-EB-A41A-01 19 18104317 18104317 C T KCNN1 Silent p.I442I 0.47 TCGA-EB-A41A-01 19 18119527 18119527 G A ARRDC2 Silent p.G94G 0.37 TCGA-EB-A41A-01 19 18119528 18119528 G A ARRDC2 Missense_Mutation p.E95K 0.37 tolerated(0.09) benign(0.058) TCGA-EB-A41A-01 19 18242762 18242762 C T MAST3 Silent p.P463P 0.50 TCGA-EB-A41A-01 19 19153641 19153641 C T ARMC6 Missense_Mutation p.P51S 0.31 tolerated(0.08) benign(0.072) TCGA-EB-A41A-01 19 19168457 19168457 C T ARMC6 3'UTR 0.39 TCGA-EB-A41A-01 19 19260221 19260221 C T MEF2B Silent p.R24R 0.24 TCGA-EB-A41A-01 19 19655007 19655007 C G CILP2 Silent p.V551V 0.38 TCGA-EB-A41A-01 19 20003133 20003133 G A ZNF253 Silent p.K359K 0.40 TCGA-EB-A41A-01 19 21477268 21477268 G A ZNF708 Missense_Mutation p.P167L 0.10 tolerated(0.27) benign(0.139) TCGA-EB-A41A-01 19 22157551 22157551 G A ZNF208 Silent p.F95F 0.41 TCGA-EB-A41A-01 19 22271951 22271951 G A ZNF257 Missense_Mutation p.A467T 0.46 deleterious(0.03) benign(0.364) TCGA-EB-A41A-01 19 22942286 22942286 C T ZNF99 Missense_Mutation p.G142E 0.35 tolerated(0.84) benign(0.002) TCGA-EB-A41A-01 19 22952122 22952122 G A ZNF99 Missense_Mutation p.S3L 0.38 tolerated(0.78) benign(0.159) TCGA-EB-A41A-01 19 23926911 23926911 C T ZNF681 Missense_Mutation p.E481K 0.40 tolerated(0.14) possibly_damaging(0.874) TCGA-EB-A41A-01 19 30936603 30936603 G A ZNF536 Missense_Mutation p.E712K 0.34 deleterious(0.02) probably_damaging(0.991) TCGA-EB-A41A-01 19 3207776 3207776 C T NCLN 3'UTR 0.59 TCGA-EB-A41A-01 19 36035917 36035917 G C GAPDHS Intron 0.37 TCGA-EB-A41A-01 19 362266 362266 G A THEG Silent p.A358A 0.36 TCGA-EB-A41A-01 19 36322216 36322216 C T NPHS1 Silent p.R1123R 0.48 TCGA-EB-A41A-01 19 36430389 36430389 A T LRFN3 Missense_Mutation p.Q21L 0.53 tolerated(0.73) unknown(0) TCGA-EB-A41A-01 19 36831234 36831234 G A ZFP14 Silent p.H498H 0.36 TCGA-EB-A41A-01 19 37734219 37734219 A T ZNF383 Missense_Mutation p.T361S 0.39 tolerated(0.11) benign(0.059) TCGA-EB-A41A-01 19 38610197 38610197 C T SIPA1L3 Missense_Mutation p.S848F 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 19 38948817 38948817 C T RYR1 Silent p.G684G 0.40 TCGA-EB-A41A-01 19 38987556 38987556 G A RYR1 Missense_Mutation p.E2285K 0.35 benign(0.027) TCGA-EB-A41A-01 19 39292352 39292352 G A LGALS4 3'UTR 0.34 TCGA-EB-A41A-01 19 40095258 40095258 C T LGALS13 Missense_Mutation p.P11L 0.34 tolerated(0.62) benign(0.021) TCGA-EB-A41A-01 19 40360866 40360866 C T FCGBP Missense_Mutation p.R5181Q 0.39 benign(0.183) TCGA-EB-A41A-01 19 40521419 40521419 C T ZNF546 Missense_Mutation p.P748S 0.44 deleterious(0.01) probably_damaging(0.935) TCGA-EB-A41A-01 19 41243659 41243659 C T ITPKC Silent p.F611F 0.44 TCGA-EB-A41A-01 19 41597792 41597792 C T CYP2A13 Silent p.S270S 0.35 TCGA-EB-A41A-01 19 41712663 41712663 C T CYP2S1 3'UTR 0.56 TCGA-EB-A41A-01 19 41758290 41758290 C T AXL Silent p.F582F 0.40 TCGA-EB-A41A-01 19 42085802 42085802 C T CEACAM21 Missense_Mutation p.S174F 0.46 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A41A-01 19 42222168 42222168 G A CEACAM5 Silent p.G453G 0.33 TCGA-EB-A41A-01 19 42480654 42480654 C T ATP1A3 Missense_Mutation p.E683K 0.09 tolerated(0.18) possibly_damaging(0.553) TCGA-EB-A41A-01 19 42486143 42486143 G A ATP1A3 Missense_Mutation p.T383I 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 19 42600307 42600307 G A POU2F2 Missense_Mutation p.P197L 0.54 deleterious(0) possibly_damaging(0.527) TCGA-EB-A41A-01 19 4298269 4298269 C T TMIGD2 Silent p.A40A 0.54 TCGA-EB-A41A-01 19 43243162 43243162 C T PSG3 Silent p.G48G 0.46 TCGA-EB-A41A-01 19 43420354 43420354 C T PSG6 Missense_Mutation p.G117E 0.42 deleterious(0) probably_damaging(0.992) TCGA-EB-A41A-01 19 43585056 43585056 C T PSG2 Missense_Mutation p.G136E 0.35 deleterious(0) probably_damaging(0.987) TCGA-EB-A41A-01 19 43585170 43585170 C T PSG2 Missense_Mutation p.R98Q 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A41A-01 19 43698696 43698696 C T PSG4 Missense_Mutation p.G347R 0.41 tolerated(0.11) probably_damaging(1) TCGA-EB-A41A-01 19 44470395 44470395 C T ZNF221 Silent p.V247V 0.44 TCGA-EB-A41A-01 19 44635578 44635578 C T ZNF225 Missense_Mutation p.H271Y 0.45 tolerated(0.74) benign(0.196) TCGA-EB-A41A-01 19 44662418 44662418 A T ZNF234 3'UTR 0.41 TCGA-EB-A41A-01 19 44679006 44679006 C A ZNF226 Intron 0.28 TCGA-EB-A41A-01 19 45391591 45391591 C T PVRL2 Silent p.S524S 0.36 TCGA-EB-A41A-01 19 45535846 45535846 C T RELB Missense_Mutation p.S349F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 19 46387783 46387783 G A IRF2BP1 Missense_Mutation p.P417L 0.50 tolerated(0.19) benign(0) TCGA-EB-A41A-01 19 46832684 46832684 C T HIF3A Missense_Mutation p.P554L 0.40 deleterious_low_confidence(0) benign(0.357) TCGA-EB-A41A-01 19 47228113 47228113 G A STRN4 Silent p.I522I 0.55 TCGA-EB-A41A-01 19 47354127 47354127 G A AP2S1 5'UTR 0.55 TCGA-EB-A41A-01 19 48800297 48800297 G A CCDC114 Missense_Mutation p.S650F 0.39 deleterious(0.02) probably_damaging(0.919) TCGA-EB-A41A-01 19 48955974 48955974 C T GRWD1 Missense_Mutation p.P345S 0.52 tolerated(0.09) possibly_damaging(0.461) TCGA-EB-A41A-01 19 49055521 49055521 C G SULT2B1 Silent p.P4P 0.42 TCGA-EB-A41A-01 19 49173971 49173971 G A NTN5 Silent p.I91I 0.33 TCGA-EB-A41A-01 19 49300448 49300448 C T BCAT2 Missense_Mutation p.V280M 0.33 deleterious(0) benign(0.292) TCGA-EB-A41A-01 19 49436946 49436946 G A DHDH 5'UTR 0.31 TCGA-EB-A41A-01 19 50086803 50086803 C T PRRG2 Silent p.V30V 0.41 TCGA-EB-A41A-01 19 50285871 50285871 C T AP2A1 Silent p.A121A 0.28 TCGA-EB-A41A-01 19 50461738 50461738 G A SIGLEC11 Silent p.L485L 0.33 TCGA-EB-A41A-01 19 50462137 50462137 C T SIGLEC11 Missense_Mutation p.G376S 0.36 deleterious(0.01) possibly_damaging(0.877) TCGA-EB-A41A-01 19 50549870 50549870 C T ZNF473 Missense_Mutation p.H724Y 0.42 deleterious(0.03) benign(0.365) TCGA-EB-A41A-01 19 50984138 50984138 C T EMC10 Intron 0.38 TCGA-EB-A41A-01 19 51301246 51301246 G A C19orf48 3'UTR 0.36 TCGA-EB-A41A-01 19 51563736 51563736 G A KLK13 Silent p.L65L 0.41 TCGA-EB-A41A-01 19 52023214 52023214 G A SIGLEC6 3'UTR 0.40 TCGA-EB-A41A-01 19 5206734 5206734 G A PTPRS 3'UTR 0.54 TCGA-EB-A41A-01 19 52132740 52132740 C T SIGLEC5 Missense_Mutation p.E191K 0.25 tolerated(0.76) benign(0.016) TCGA-EB-A41A-01 19 52146405 52146405 G A SIGLEC14 3'UTR 0.50 TCGA-EB-A41A-01 19 52146491 52146491 G A SIGLEC14 3'UTR 0.46 TCGA-EB-A41A-01 19 52658239 52658239 G A ZNF836 Silent p.F899F 0.36 TCGA-EB-A41A-01 19 53015379 53015379 C T ZNF578 Missense_Mutation p.S582L 0.31 tolerated_low_confidence(0.61) benign(0) TCGA-EB-A41A-01 19 53057934 53057934 C T ZNF808 Missense_Mutation p.H589Y 0.44 deleterious(0) probably_damaging(0.981) TCGA-EB-A41A-01 19 53383907 53383907 G A ZNF320 Missense_Mutation p.P491L 0.16 deleterious(0) benign(0.119) TCGA-EB-A41A-01 19 53643921 53643921 G A ZNF347 Silent p.V721V 0.40 TCGA-EB-A41A-01 19 54140084 54140084 C T DPRX Missense_Mutation p.P140S 0.42 tolerated(0.53) benign(0.006) TCGA-EB-A41A-01 19 54214279 54214279 G A MIR524 RNA 0.39 TCGA-EB-A41A-01 19 54238155 54238155 G A MIR518D RNA 0.48 TCGA-EB-A41A-01 19 54444857 54444857 C T CACNG7 Silent p.F186F 0.37 TCGA-EB-A41A-01 19 54445685 54445685 C T CACNG7 3'UTR 0.49 TCGA-EB-A41A-01 19 54496152 54496152 C T CACNG6 Silent p.F7F 0.18 TCGA-EB-A41A-01 19 54600173 54600173 C T OSCAR Missense_Mutation p.D121N 0.50 tolerated(0.3) benign(0.335) TCGA-EB-A41A-01 19 54848886 54848886 G A LILRA4 Missense_Mutation p.S246F 0.48 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 19 55107865 55107865 C T LILRA1 Silent p.A390A 0.45 TCGA-EB-A41A-01 19 55107866 55107866 C T LILRA1 Missense_Mutation p.H391Y 0.46 tolerated(0.07) probably_damaging(0.99) TCGA-EB-A41A-01 19 55143633 55143633 G A LILRB1 Silent p.S202S 0.43 TCGA-EB-A41A-01 19 55144201 55144201 C T LILRB1 Silent p.I316I 0.39 TCGA-EB-A41A-01 19 55298072 55298072 C T KIR2DL1 3'Flank 0.38 TCGA-EB-A41A-01 19 56041145 56041145 G A SBK2 Silent p.G334G 0.46 TCGA-EB-A41A-01 19 56241343 56241343 G A NLRP9 Silent p.L616L 0.39 TCGA-EB-A41A-01 19 56297069 56297069 C T NLRP11 Silent p.L1008L 0.39 TCGA-EB-A41A-01 19 56443402 56443402 C T NLRP13 Missense_Mutation p.M92I 0.35 deleterious(0.01) benign(0.444) TCGA-EB-A41A-01 19 56539409 56539409 G A NLRP5 Missense_Mutation p.E604K 0.31 tolerated(0.28) benign(0.028) TCGA-EB-A41A-01 19 56952976 56952976 C T ZNF667 Missense_Mutation p.R463K 0.35 tolerated(0.09) probably_damaging(0.948) TCGA-EB-A41A-01 19 57327691 57327691 G A PEG3 Missense_Mutation p.H707Y 0.52 tolerated(0.3) possibly_damaging(0.863) TCGA-EB-A41A-01 19 57329149 57329149 C T PEG3 Missense_Mutation p.R276K 0.47 deleterious(0.01) possibly_damaging(0.831) TCGA-EB-A41A-01 19 5763275 5763275 G A CATSPERD Missense_Mutation p.E493K 0.40 tolerated(0.1) benign(0.117) TCGA-EB-A41A-01 19 57646415 57646415 C T ZIM3 Silent p.R430R 0.45 TCGA-EB-A41A-01 19 58153572 58153572 C T ZNF211 3'UTR 0.40 TCGA-EB-A41A-01 19 58232733 58232733 G A ZNF671 Missense_Mutation p.L241F 0.48 tolerated(1) benign(0.009) TCGA-EB-A41A-01 19 5831230 5831230 G A FUT6 3'UTR 0.47 TCGA-EB-A41A-01 19 58388327 58388327 G A ZNF814 Silent p.Y40Y 0.42 TCGA-EB-A41A-01 19 58439317 58439317 G A ZNF418 Missense_Mutation p.P78S 0.44 tolerated(1) benign(0.009) TCGA-EB-A41A-01 19 621069 621069 G A POLRMT Nonsense_Mutation p.Q877* 0.37 TCGA-EB-A41A-01 19 652849 652849 G A RNF126 Silent p.I37I 0.35 TCGA-EB-A41A-01 19 6664934 6664934 C T TNFSF14 3'UTR 0.34 TCGA-EB-A41A-01 19 6751278 6751278 G A TRIP10 3'UTR 0.38 TCGA-EB-A41A-01 19 7122668 7122668 C T INSR Silent p.A1162A 0.45 TCGA-EB-A41A-01 19 7516115 7516115 C T ARHGEF18 Silent p.Y418Y 0.36 TCGA-EB-A41A-01 19 7809871 7809871 C T CD209 Missense_Mutation p.E286K 0.35 deleterious(0.04) benign(0.173) TCGA-EB-A41A-01 19 7830729 7830729 C T CLEC4M Silent p.T140T 0.32 TCGA-EB-A41A-01 19 8032476 8032476 G A ELAVL1 Missense_Mutation p.P210L 0.41 deleterious(0.01) possibly_damaging(0.859) TCGA-EB-A41A-01 19 830879 830879 G T AZU1 Missense_Mutation p.D178Y 0.41 tolerated(1) possibly_damaging(0.547) TCGA-EB-A41A-01 19 8530370 8530370 A G HNRNPM Missense_Mutation p.R201G 0.38 deleterious(0.01) possibly_damaging(0.704) TCGA-EB-A41A-01 19 8563369 8563369 C T PRAM1 Silent p.R441R 0.29 TCGA-EB-A41A-01 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.39 tolerated(0.13) benign(0.153) TCGA-EB-A41A-01 19 8933441 8933441 C G ZNF558 Intron 0.42 TCGA-EB-A41A-01 19 8976789 8976789 C T MUC16 Missense_Mutation p.G14093S 0.31 probably_damaging(0.956) TCGA-EB-A41A-01 19 9007833 9007833 G A MUC16 Missense_Mutation p.R13131W 0.29 benign(0.329) TCGA-EB-A41A-01 19 9049605 9049605 C T MUC16 Missense_Mutation p.E10676K 0.42 benign(0.001) TCGA-EB-A41A-01 19 9056775 9056775 G A MUC16 Missense_Mutation p.P10224L 0.44 benign(0.007) TCGA-EB-A41A-01 19 9056776 9056776 G A MUC16 Missense_Mutation p.P10224S 0.44 benign(0) TCGA-EB-A41A-01 19 9065577 9065577 G A MUC16 Missense_Mutation p.S7290F 0.34 unknown(0) TCGA-EB-A41A-01 19 9068354 9068354 C T MUC16 Silent p.L6364L 0.33 TCGA-EB-A41A-01 19 9068830 9068830 C T MUC16 Missense_Mutation p.D6206N 0.32 unknown(0) TCGA-EB-A41A-01 19 9074898 9074898 G A MUC16 Missense_Mutation p.P4183L 0.41 unknown(0) TCGA-EB-A41A-01 19 9087098 9087098 C T MUC16 Missense_Mutation p.D1573N 0.39 unknown(0) TCGA-EB-A41A-01 19 9204508 9204508 G A OR1M1 Silent p.R196R 0.36 TCGA-EB-A41A-01 19 9325258 9325258 G A OR7D4 Nonsense_Mutation p.Q86* 0.37 TCGA-EB-A41A-01 19 9801498 9801498 C T ZNF812 Silent p.G227G 0.42 TCGA-EB-A41A-01 1 100203670 100203670 G A FRRS1 Missense_Mutation p.S244F 0.60 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 1 100366321 100366321 C T AGL Silent p.Y1164Y 0.60 TCGA-EB-A41A-01 1 10335516 10335516 C T KIF1B Missense_Mutation p.P299S 0.72 deleterious(0) probably_damaging(0.984) TCGA-EB-A41A-01 1 104114279 104114279 C T AMY2B Missense_Mutation p.P19S 0.54 deleterious(0.05) benign(0.315) TCGA-EB-A41A-01 1 104163287 104163287 G A AMY2A Missense_Mutation p.E287K 0.27 tolerated(0.21) probably_damaging(0.968) TCGA-EB-A41A-01 1 10473274 10473274 C T PGD Silent p.S270S 0.72 TCGA-EB-A41A-01 1 109273354 109273354 G A FNDC7 Silent p.V561V 0.63 TCGA-EB-A41A-01 1 109795402 109795402 G A CELSR2 Missense_Mutation p.A901T 0.31 tolerated(0.07) benign(0.021) TCGA-EB-A41A-01 1 110883833 110883833 T A RBM15 Silent p.A602A 0.61 TCGA-EB-A41A-01 1 114964187 114964187 G A TRIM33 Silent p.S644S 0.25 TCGA-EB-A41A-01 1 116202393 116202393 A G VANGL1 Missense_Mutation p.Q68R 0.24 tolerated(0.22) benign(0.032) TCGA-EB-A41A-01 1 117146392 117146392 G A IGSF3 Missense_Mutation p.S513L 0.22 tolerated(0.29) benign(0.02) TCGA-EB-A41A-01 1 117297532 117297532 G A CD2 Missense_Mutation p.G114E 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 117618239 117618239 C T TTF2 Missense_Mutation p.R345C 0.32 tolerated(0.08) benign(0.018) TCGA-EB-A41A-01 1 118539017 118539017 G A SPAG17 Nonsense_Mutation p.Q1677* 0.54 TCGA-EB-A41A-01 1 119929401 119929401 G A HAO2 Missense_Mutation p.G240S 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 1 12082472 12082472 C T MIIP Silent p.I145I 0.75 TCGA-EB-A41A-01 1 12294287 12294287 C T VPS13D 5'UTR 0.78 TCGA-EB-A41A-01 1 1275649 1275649 G A DVL1 Silent p.I249I 0.77 TCGA-EB-A41A-01 1 12907815 12907815 C T HNRNPCL1 Missense_Mutation p.D110N 0.17 tolerated(0.19) benign(0.025) TCGA-EB-A41A-01 1 12908204 12908204 C T HNRNPCL1 5'UTR 0.12 TCGA-EB-A41A-01 1 142713656 142713656 G A RP11-417J8.6 RNA 0.19 TCGA-EB-A41A-01 1 144852334 144852334 G A PDE4DIP 3'UTR 0.15 TCGA-EB-A41A-01 1 144863421 144863421 G A PDE4DIP Silent p.L1994L 0.13 TCGA-EB-A41A-01 1 144930705 144930705 C T PDE4DIP Intron 0.28 TCGA-EB-A41A-01 1 145416446 145416446 C T HFE2 Missense_Mutation p.S264L 0.25 tolerated(0.28) benign(0.034) TCGA-EB-A41A-01 1 145532258 145532258 G A ITGA10 Missense_Mutation p.G301E 0.23 deleterious(0) probably_damaging(0.944) TCGA-EB-A41A-01 1 148346878 148346878 G A NBPF20 Intron 0.18 TCGA-EB-A41A-01 1 149879757 149879757 A G SV2A Missense_Mutation p.Y461H 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A41A-01 1 150484178 150484178 C T ECM1 Silent p.F345F 0.61 TCGA-EB-A41A-01 1 150802450 150802450 G A ARNT Missense_Mutation p.S321F 0.55 deleterious(0.02) possibly_damaging(0.498) TCGA-EB-A41A-01 1 151259209 151259209 A T ZNF687 Missense_Mutation p.T148S 0.57 tolerated(0.81) benign(0.001) TCGA-EB-A41A-01 1 151786028 151786028 G A RORC Silent p.F334F 0.36 TCGA-EB-A41A-01 1 152186567 152186567 C T HRNR Missense_Mutation p.G2513D 0.24 unknown(0) TCGA-EB-A41A-01 1 152276152 152276152 G A FLG Missense_Mutation p.S3737F 0.62 unknown(0) TCGA-EB-A41A-01 1 152325932 152325932 C T FLG2 Missense_Mutation p.E1444K 0.59 benign(0.004) TCGA-EB-A41A-01 1 152326071 152326071 C T FLG2 Silent p.E1397E 0.10 TCGA-EB-A41A-01 1 152327830 152327830 C T FLG2 Missense_Mutation p.G811E 0.28 unknown(0) TCGA-EB-A41A-01 1 152329201 152329201 C T FLG2 Missense_Mutation p.G354E 0.54 unknown(0) TCGA-EB-A41A-01 1 152329880 152329880 C T FLG2 Missense_Mutation p.G128S 0.64 unknown(0) TCGA-EB-A41A-01 1 152331356 152331356 G A FLG2 Missense_Mutation p.T2I 0.61 unknown(0) TCGA-EB-A41A-01 1 152538479 152538479 T C LCE3E Missense_Mutation p.N69S 0.62 tolerated_low_confidence(0.18) unknown(0) TCGA-EB-A41A-01 1 153029048 153029048 G A SPRR2A Missense_Mutation p.P55L 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EB-A41A-01 1 153043004 153043004 G A SPRR2B 3'UTR 0.34 TCGA-EB-A41A-01 1 153963243 153963243 C T RPS27 5'UTR 0.64 TCGA-EB-A41A-01 1 153984830 153984830 G A NUP210L Missense_Mutation p.S1557L 0.31 tolerated(0.09) probably_damaging(0.955) TCGA-EB-A41A-01 1 154680443 154680443 G A KCNN3 3'UTR 0.27 TCGA-EB-A41A-01 1 155206068 155206068 G A GBA Nonsense_Mutation p.R398* 0.27 TCGA-EB-A41A-01 1 155234036 155234036 G A CLK2 Missense_Mutation p.P400L 0.57 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 155450948 155450948 G A ASH1L Silent p.P571P 0.65 TCGA-EB-A41A-01 1 155735978 155735978 G A GON4L Missense_Mutation p.P1096S 0.32 tolerated_low_confidence(0.16) probably_damaging(0.991) TCGA-EB-A41A-01 1 156445004 156445004 G A MEF2D Missense_Mutation p.S301F 0.22 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 1 156816394 156816394 C A INSRR Missense_Mutation p.R576L 0.29 deleterious(0) benign(0.414) TCGA-EB-A41A-01 1 156823854 156823854 G A INSRR Silent p.L109L 0.35 TCGA-EB-A41A-01 1 156878754 156878754 A G PEAR1 Missense_Mutation p.N446S 0.56 deleterious(0.02) benign(0.22) TCGA-EB-A41A-01 1 156884534 156884534 G A PEAR1 Missense_Mutation p.D1020N 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 157497478 157497478 C T FCRL5 Missense_Mutation p.G630E 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 1 157551398 157551398 C T FCRL4 Missense_Mutation p.G391E 0.31 deleterious(0.02) possibly_damaging(0.829) TCGA-EB-A41A-01 1 158226577 158226577 G A CD1A Silent p.V202V 0.58 TCGA-EB-A41A-01 1 158390293 158390293 G A OR10K2 Missense_Mutation p.R122C 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A41A-01 1 158390349 158390349 G A OR10K2 Missense_Mutation p.S103F 0.65 tolerated(1) benign(0.003) TCGA-EB-A41A-01 1 158580967 158580967 T A SPTA1 3'UTR 0.35 TCGA-EB-A41A-01 1 158592929 158592929 G A SPTA1 Silent p.I1988I 0.64 TCGA-EB-A41A-01 1 158615103 158615103 C T SPTA1 Missense_Mutation p.D1357N 0.30 tolerated(0.58) benign(0.011) TCGA-EB-A41A-01 1 158632529 158632529 G A SPTA1 Silent p.I809I 0.25 TCGA-EB-A41A-01 1 158637774 158637774 C T SPTA1 Missense_Mutation p.E638K 0.56 tolerated(0.2) benign(0.002) TCGA-EB-A41A-01 1 158648325 158648325 C T SPTA1 Splice_Site p.X227_splice 0.69 TCGA-EB-A41A-01 1 158670427 158670427 G A OR6K2 Nonsense_Mutation p.R6* 0.56 TCGA-EB-A41A-01 1 158687515 158687515 G A OR6K3 Missense_Mutation p.R131C 0.56 deleterious(0) benign(0.119) TCGA-EB-A41A-01 1 158746611 158746611 C T OR6N2 Missense_Mutation p.R272Q 0.32 tolerated(0.08) benign(0.133) TCGA-EB-A41A-01 1 158813786 158813786 G A MNDA Silent p.R148R 0.25 TCGA-EB-A41A-01 1 158815382 158815382 G A MNDA Silent p.Q192Q 0.28 TCGA-EB-A41A-01 1 15906613 15906613 G A AGMAT Missense_Mutation p.P167L 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 159272169 159272169 G A FCER1A Missense_Mutation p.M5I 0.25 tolerated(0.07) benign(0.023) TCGA-EB-A41A-01 1 159276024 159276024 C T FCER1A Missense_Mutation p.T193I 0.33 tolerated(0.17) benign(0.09) TCGA-EB-A41A-01 1 159284008 159284008 C T OR10J3 Missense_Mutation p.G148R 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A41A-01 1 159409656 159409656 C T OR10J1 Silent p.I36I 0.26 TCGA-EB-A41A-01 1 159558299 159558299 C T APCS Missense_Mutation p.S158F 0.49 deleterious(0) probably_damaging(0.96) TCGA-EB-A41A-01 1 159799772 159799772 C G SLAMF8 Missense_Mutation p.L53V 0.55 tolerated(0.1) possibly_damaging(0.871) TCGA-EB-A41A-01 1 159805039 159805039 G A SLAMF8 Missense_Mutation p.D283N 0.34 tolerated_low_confidence(0.15) benign(0.015) TCGA-EB-A41A-01 1 160151741 160151741 G A ATP1A4 Silent p.G963G 0.24 TCGA-EB-A41A-01 1 160282899 160282899 G A COPA Missense_Mutation p.P301S 0.24 deleterious(0.01) benign(0.266) TCGA-EB-A41A-01 1 160719796 160719796 G A SLAMF7 Missense_Mutation p.E188K 0.27 tolerated(0.34) benign(0.158) TCGA-EB-A41A-01 1 16074047 16074047 C T TMEM82 Missense_Mutation p.P318S 0.78 tolerated(0.19) benign(0.023) TCGA-EB-A41A-01 1 161018287 161018287 C T ARHGAP30 Missense_Mutation p.D842N 0.31 deleterious_low_confidence(0.01) benign(0.081) TCGA-EB-A41A-01 1 161021476 161021476 G A ARHGAP30 Missense_Mutation p.P350S 0.62 tolerated(0.35) benign(0.014) TCGA-EB-A41A-01 1 161166320 161166320 G A ADAMTS4 Intron 0.64 TCGA-EB-A41A-01 1 161199501 161199501 C T NR1I3 3'UTR 0.26 TCGA-EB-A41A-01 1 161336031 161336031 G C C1orf192 Missense_Mutation p.A43G 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-EB-A41A-01 1 161495333 161495333 C T HSPA6 Silent p.F295F 0.50 TCGA-EB-A41A-01 1 161771939 161771939 C T ATF6 Silent p.V262V 0.25 TCGA-EB-A41A-01 1 16458322 16458322 G A EPHA2 Missense_Mutation p.S790F 0.79 deleterious(0) possibly_damaging(0.854) TCGA-EB-A41A-01 1 165175151 165175151 C T LMX1A Missense_Mutation p.R313Q 0.27 tolerated(0.83) benign(0.002) TCGA-EB-A41A-01 1 16577669 16577669 G A FBXO42 Silent p.A550A 0.75 TCGA-EB-A41A-01 1 16577670 16577670 G A FBXO42 Missense_Mutation p.A550V 0.76 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-EB-A41A-01 1 167064182 167064182 C G DUSP27 Missense_Mutation p.S32R 0.31 deleterious(0) possibly_damaging(0.878) TCGA-EB-A41A-01 1 16719944 16719944 C T SZRD1 Missense_Mutation p.P108L 0.60 deleterious(0) possibly_damaging(0.879) TCGA-EB-A41A-01 1 167663357 167663357 G A RCSD1 Missense_Mutation p.A98T 0.23 tolerated(0.33) benign(0.025) TCGA-EB-A41A-01 1 167666580 167666580 G A RCSD1 Missense_Mutation p.R240K 0.62 deleterious(0) possibly_damaging(0.876) TCGA-EB-A41A-01 1 167805697 167805697 G A ADCY10 Silent p.I1053I 0.55 TCGA-EB-A41A-01 1 168282258 168282258 T A TBX19 3'UTR 0.46 TCGA-EB-A41A-01 1 168282259 168282259 C T TBX19 3'UTR 0.45 TCGA-EB-A41A-01 1 169364355 169364355 G A CCDC181 Missense_Mutation p.S486F 0.32 deleterious(0) benign(0.422) TCGA-EB-A41A-01 1 169394075 169394075 C T CCDC181 Missense_Mutation p.E31K 0.49 tolerated(0.05) probably_damaging(0.94) TCGA-EB-A41A-01 1 171080110 171080110 G A FMO3 Missense_Mutation p.E267K 0.31 tolerated(0.14) benign(0.168) TCGA-EB-A41A-01 1 171311041 171311041 C T FMO4 3'UTR 0.56 TCGA-EB-A41A-01 1 172501615 172501615 G A SUCO 5'Flank 0.36 TCGA-EB-A41A-01 1 173883952 173883952 C T SERPINC1 Missense_Mutation p.M49I 0.57 tolerated(0.16) benign(0.004) TCGA-EB-A41A-01 1 175375835 175375835 C T TNR Missense_Mutation p.E6K 0.56 deleterious_low_confidence(0.04) benign(0.069) TCGA-EB-A41A-01 1 175375900 175375900 G A TNR 5'UTR 0.39 TCGA-EB-A41A-01 1 176563735 176563735 G A PAPPA2 Missense_Mutation p.G332E 0.39 deleterious(0.02) probably_damaging(0.965) TCGA-EB-A41A-01 1 176709187 176709187 C T PAPPA2 Missense_Mutation p.H1336Y 0.54 tolerated(1) benign(0.001) TCGA-EB-A41A-01 1 176759108 176759108 G A PAPPA2 Missense_Mutation p.E1627K 0.56 tolerated(0.5) benign(0.001) TCGA-EB-A41A-01 1 176915099 176915099 C T ASTN1 Missense_Mutation p.E738K 0.28 tolerated(0.11) probably_damaging(0.96) TCGA-EB-A41A-01 1 17701943 17701943 C T PADI6 RNA 1.00 TCGA-EB-A41A-01 1 17708551 17708551 G A PADI6 RNA 0.77 TCGA-EB-A41A-01 1 177250208 177250208 G A BRINP2 Silent p.G632G 0.67 TCGA-EB-A41A-01 1 177937101 177937101 G A SEC16B Missense_Mutation p.P6S 0.12 tolerated(0.08) possibly_damaging(0.55) TCGA-EB-A41A-01 1 181762859 181762859 C T CACNA1E Missense_Mutation p.P1986L 0.25 tolerated(0.05) benign(0.319) TCGA-EB-A41A-01 1 181767432 181767432 C T CACNA1E Missense_Mutation p.T2135I 0.56 deleterious(0.03) possibly_damaging(0.507) TCGA-EB-A41A-01 1 182617391 182617391 C T RGS8 Missense_Mutation p.E99K 0.26 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 1 185880852 185880852 C T HMCN1 Silent p.I280I 0.56 TCGA-EB-A41A-01 1 186062681 186062681 C T HMCN1 Missense_Mutation p.S3359L 0.53 probably_damaging(0.993) TCGA-EB-A41A-01 1 186276837 186276837 G A PRG4 Silent p.E662E 0.28 TCGA-EB-A41A-01 1 18661491 18661491 C T IGSF21 Silent p.F137F 0.82 TCGA-EB-A41A-01 1 18703405 18703405 G A IGSF21 Missense_Mutation p.E405K 0.71 tolerated(0.07) probably_damaging(0.997) TCGA-EB-A41A-01 1 190195314 190195314 G A BRINP3 Missense_Mutation p.P287S 0.59 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 1 196303142 196303142 C T KCNT2 Missense_Mutation p.G611D 0.21 deleterious(0.03) benign(0.08) TCGA-EB-A41A-01 1 196303143 196303143 C T KCNT2 Missense_Mutation p.G611S 0.20 tolerated(0.51) benign(0.004) TCGA-EB-A41A-01 1 196716270 196716270 G A CFH Missense_Mutation p.E1175K 0.59 tolerated(0.17) benign(0.037) TCGA-EB-A41A-01 1 196952032 196952032 C T CFHR5 Missense_Mutation p.P26S 0.60 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A41A-01 1 197032007 197032007 G A F13B Missense_Mutation p.S82F 0.62 deleterious(0.02) benign(0.151) TCGA-EB-A41A-01 1 197070446 197070446 G A ASPM Silent p.L2645L 0.26 TCGA-EB-A41A-01 1 197396928 197396928 G A CRB1 Missense_Mutation p.E825K 0.63 deleterious(0.05) benign(0.007) TCGA-EB-A41A-01 1 197398615 197398615 C T CRB1 Missense_Mutation p.R905W 0.25 deleterious(0.02) benign(0.004) TCGA-EB-A41A-01 1 197404357 197404357 G A CRB1 Missense_Mutation p.E1122K 0.61 tolerated(0.25) benign(0.008) TCGA-EB-A41A-01 1 200860707 200860707 G A C1orf106 5'Flank 0.50 TCGA-EB-A41A-01 1 200882775 200882775 G A C1orf106 3'UTR 0.42 TCGA-EB-A41A-01 1 201332569 201332569 G A TNNT2 Intron 0.57 TCGA-EB-A41A-01 1 203672833 203672833 G A ATP2B4 Missense_Mutation p.G331R 0.59 deleterious(0.02) probably_damaging(0.92) TCGA-EB-A41A-01 1 204129706 204129706 G A REN Silent p.L158L 0.55 TCGA-EB-A41A-01 1 204410631 204410631 G A PIK3C2B Missense_Mutation p.P1073S 0.47 tolerated(0.08) benign(0.092) TCGA-EB-A41A-01 1 206651584 206651584 C T IKBKE Silent p.F298F 0.58 TCGA-EB-A41A-01 1 207305068 207305068 C T C4BPA Missense_Mutation p.P356L 0.38 tolerated(0.07) possibly_damaging(0.82) TCGA-EB-A41A-01 1 207697275 207697275 C T CR1 Silent p.G269G 0.46 TCGA-EB-A41A-01 1 209789968 209789968 C T LAMB3 Missense_Mutation p.G1077E 0.57 tolerated(0.14) possibly_damaging(0.548) TCGA-EB-A41A-01 1 209791266 209791266 C T LAMB3 Missense_Mutation p.D1013N 0.60 tolerated(0.22) benign(0.008) TCGA-EB-A41A-01 1 20991137 20991137 G A KIF17 Silent p.I1010I 0.73 TCGA-EB-A41A-01 1 212799827 212799827 C T FAM71A Silent p.N536N 0.57 TCGA-EB-A41A-01 1 214209138 214209138 C T PROX1 Silent p.F725F 0.57 TCGA-EB-A41A-01 1 216073536 216073536 G A USH2A Missense_Mutation p.S2492L 0.53 benign(0.243) TCGA-EB-A41A-01 1 220091969 220091969 G A SLC30A10 Intron 0.28 TCGA-EB-A41A-01 1 22303559 22303559 C T CELA3B Silent p.L9L 0.76 TCGA-EB-A41A-01 1 223286264 223286264 T C TLR5 Missense_Mutation p.N37S 0.12 tolerated(0.12) benign(0.092) TCGA-EB-A41A-01 1 223465954 223465954 G A SUSD4 Missense_Mutation p.P63L 0.60 deleterious(0.04) benign(0.198) TCGA-EB-A41A-01 1 228111911 228111911 T A WNT9A Missense_Mutation p.E181D 0.27 tolerated(0.43) benign(0.001) TCGA-EB-A41A-01 1 230401076 230401076 T C GALNT2 Missense_Mutation p.V468A 0.21 tolerated(0.17) possibly_damaging(0.78) TCGA-EB-A41A-01 1 230459184 230459184 G A PGBD5 Missense_Mutation p.S452F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A41A-01 1 231339654 231339654 C T TRIM67 Missense_Mutation p.R526C 0.28 deleterious(0) probably_damaging(0.963) TCGA-EB-A41A-01 1 233802629 233802629 C T KCNK1 Missense_Mutation p.S215F 0.26 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 1 23420749 23420749 G A LUZP1 Silent p.A2A 0.77 TCGA-EB-A41A-01 1 236735822 236735822 A G HEATR1 Missense_Mutation p.V1199A 0.33 tolerated(0.9) benign(0.004) TCGA-EB-A41A-01 1 240072257 240072257 C T CHRM3 Silent p.I502I 0.23 TCGA-EB-A41A-01 1 240371745 240371745 C T FMN2 Silent p.P1211P 0.54 TCGA-EB-A41A-01 1 240374523 240374523 G A FMN2 Silent p.T1351T 0.24 TCGA-EB-A41A-01 1 240939352 240939352 C T RGS7 3'UTR 0.30 TCGA-EB-A41A-01 1 241262017 241262017 G A RGS7 Missense_Mutation p.P42S 0.31 tolerated(0.08) probably_damaging(0.994) TCGA-EB-A41A-01 1 241713040 241713040 G C KMO Missense_Mutation p.R63P 0.49 deleterious(0.01) possibly_damaging(0.88) TCGA-EB-A41A-01 1 241749995 241749995 C T KMO Silent p.C324C 0.27 TCGA-EB-A41A-01 1 242052799 242052799 C T EXO1 Missense_Mutation p.P813L 0.53 deleterious(0) probably_damaging(0.985) TCGA-EB-A41A-01 1 242253243 242253243 C T PLD5 Silent p.P508P 0.28 TCGA-EB-A41A-01 1 243303361 243303361 G A CEP170 Missense_Mutation p.P1370S 0.53 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 1 243419325 243419325 C T SDCCAG8 5'Flank 0.54 TCGA-EB-A41A-01 1 24432568 24432568 C T MYOM3 Splice_Site p.X135_splice 0.59 TCGA-EB-A41A-01 1 247769251 247769251 C T OR2G3 Missense_Mutation p.R122W 0.58 deleterious(0) probably_damaging(0.983) TCGA-EB-A41A-01 1 247769295 247769295 G A OR2G3 Missense_Mutation p.M136I 0.57 deleterious(0.03) benign(0.134) TCGA-EB-A41A-01 1 247769354 247769354 C T OR2G3 Missense_Mutation p.S156F 0.57 deleterious(0) probably_damaging(0.972) TCGA-EB-A41A-01 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.28 deleterious(0.04) benign(0.335) TCGA-EB-A41A-01 1 248129203 248129203 C A OR2AK2 Missense_Mutation p.N190K 0.53 deleterious(0.01) benign(0.327) TCGA-EB-A41A-01 1 248309347 248309347 G A OR2M5 Missense_Mutation p.A300T 0.23 deleterious(0) possibly_damaging(0.616) TCGA-EB-A41A-01 1 248402697 248402697 G A OR2M4 Missense_Mutation p.G156E 0.59 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 1 248512738 248512738 C T OR14C36 Missense_Mutation p.S221L 0.22 deleterious(0.04) probably_damaging(0.966) TCGA-EB-A41A-01 1 248551092 248551092 C T OR2T6 Silent p.F61F 0.58 TCGA-EB-A41A-01 1 248637322 248637322 C T OR2T3 Missense_Mutation p.T224I 0.57 tolerated(0.06) benign(0.126) TCGA-EB-A41A-01 1 248637323 248637323 C T OR2T3 Silent p.T224T 0.56 TCGA-EB-A41A-01 1 248813436 248813436 G A OR2T27 Silent p.L250L 0.08 TCGA-EB-A41A-01 1 248845049 248845049 A G OR14I1 Missense_Mutation p.V186A 0.27 tolerated(0.78) benign(0.006) TCGA-EB-A41A-01 1 248845119 248845119 G A OR14I1 Missense_Mutation p.R163W 0.24 tolerated(0.19) benign(0.001) TCGA-EB-A41A-01 1 26509846 26509846 G A CNKSR1 Missense_Mutation p.D232N 0.64 tolerated(0.23) benign(0.006) TCGA-EB-A41A-01 1 26515119 26515119 C T CNKSR1 Missense_Mutation p.H541Y 0.22 tolerated(0.55) benign(0.333) TCGA-EB-A41A-01 1 26594983 26594983 C T CEP85 Missense_Mutation p.R451C 0.22 deleterious(0) probably_damaging(0.928) TCGA-EB-A41A-01 1 31479912 31479912 T A PUM1 Missense_Mutation p.E157V 0.31 deleterious(0) benign(0.034) TCGA-EB-A41A-01 1 33272092 33272092 G A YARS Silent p.P167P 0.33 TCGA-EB-A41A-01 1 34401380 34401380 G A CSMD2 Silent p.F191F 0.55 TCGA-EB-A41A-01 1 34662917 34662917 G A C1orf94 Missense_Mutation p.E138K 0.57 tolerated(0.97) benign(0.001) TCGA-EB-A41A-01 1 35223225 35223225 G A GJB5 Silent p.R98R 0.54 TCGA-EB-A41A-01 1 35474515 35474515 G A ZMYM6 Silent p.F501F 0.59 TCGA-EB-A41A-01 1 36552305 36552305 C T TEKT2 Silent p.C163C 0.61 TCGA-EB-A41A-01 1 36752078 36752078 C T THRAP3 Missense_Mutation p.P83S 0.28 deleterious(0) unknown(0) TCGA-EB-A41A-01 1 3742372 3742372 G A CEP104 Missense_Mutation p.H772Y 0.70 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 38227506 38227506 G A EPHA10 Missense_Mutation p.R141C 0.32 tolerated(0.19) possibly_damaging(0.606) TCGA-EB-A41A-01 1 38227533 38227533 C T EPHA10 Missense_Mutation p.E132K 0.56 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 1 38288302 38288302 G A MTF1 Missense_Mutation p.P420S 0.25 tolerated(0.38) probably_damaging(0.997) TCGA-EB-A41A-01 1 39377005 39377005 C T RHBDL2 Missense_Mutation p.G166E 0.54 deleterious(0) probably_damaging(0.973) TCGA-EB-A41A-01 1 41298774 41298774 C T KCNQ4 Silent p.I534I 0.26 TCGA-EB-A41A-01 1 41304175 41304175 G A KCNQ4 Missense_Mutation p.V690I 0.48 tolerated(0.11) benign(0.076) TCGA-EB-A41A-01 1 42050037 42050037 G A HIVEP3 Silent p.L144L 0.11 TCGA-EB-A41A-01 1 44084814 44084814 C T PTPRF Silent p.F1529F 0.62 TCGA-EB-A41A-01 1 45474001 45474001 G A HECTD3 Intron 0.66 TCGA-EB-A41A-01 1 47284593 47284593 T C CYP4B1 3'UTR 0.29 TCGA-EB-A41A-01 1 47512182 47512182 G A CYP4X1 Missense_Mutation p.E373K 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 47533301 47533301 C T CYP4Z1 Missense_Mutation p.P47S 0.63 deleterious(0.02) probably_damaging(0.96) TCGA-EB-A41A-01 1 47691438 47691438 C T TAL1 Silent p.T41T 0.62 TCGA-EB-A41A-01 1 50574749 50574749 G A ELAVL4 Intron 0.23 TCGA-EB-A41A-01 1 52851606 52851606 G A ORC1 Missense_Mutation p.P467S 0.73 deleterious(0.01) benign(0.265) TCGA-EB-A41A-01 1 53741415 53741415 G A LRP8 Silent p.T298T 0.30 TCGA-EB-A41A-01 1 54678283 54678283 C T MRPL37 Silent p.I314I 0.58 TCGA-EB-A41A-01 1 57233514 57233514 C T C1orf168 Missense_Mutation p.E351K 0.24 tolerated(0.1) benign(0.397) TCGA-EB-A41A-01 1 57258380 57258380 G C C1orf168 Missense_Mutation p.P36A 0.62 tolerated(0.11) benign(0.228) TCGA-EB-A41A-01 1 57395032 57395032 G A C8B 3'UTR 0.35 TCGA-EB-A41A-01 1 57409465 57409465 T C C8B Missense_Mutation p.K380E 0.26 tolerated(0.06) benign(0.012) TCGA-EB-A41A-01 1 59041972 59041972 A G TACSTD2 Missense_Mutation p.V286A 0.26 deleterious(0.03) benign(0.159) TCGA-EB-A41A-01 1 62739232 62739232 C T KANK4 Missense_Mutation p.G515E 0.32 tolerated(0.38) benign(0) TCGA-EB-A41A-01 1 64027383 64027383 A C EFCAB7 Missense_Mutation p.N451T 0.29 tolerated(0.06) possibly_damaging(0.502) TCGA-EB-A41A-01 1 64515463 64515463 C T ROR1 Silent p.T88T 0.33 TCGA-EB-A41A-01 1 66098896 66098896 C T LEPR Intron 0.19 TCGA-EB-A41A-01 1 6639326 6639326 C A TAS1R1 Silent p.G736G 0.73 TCGA-EB-A41A-01 1 66838142 66838142 G A PDE4B Silent p.L664L 0.54 TCGA-EB-A41A-01 1 70587525 70587525 C T LRRC7 Silent p.F1523F 0.52 TCGA-EB-A41A-01 1 71318539 71318539 C T PTGER3 Missense_Mutation p.E370K 0.27 tolerated(0.32) benign(0) TCGA-EB-A41A-01 1 78478829 78478829 C T DNAJB4 Silent p.F102F 0.32 TCGA-EB-A41A-01 1 79386028 79386028 C T ELTD1 Missense_Mutation p.G434E 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 8073547 8073547 C T ERRFI1 Missense_Mutation p.G371E 0.73 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 1 85655855 85655855 A C SYDE2 Silent p.P442P 0.61 TCGA-EB-A41A-01 1 87031693 87031693 G A CLCA4 Missense_Mutation p.G315E 0.64 tolerated(0.06) benign(0.434) TCGA-EB-A41A-01 1 87043668 87043668 C T CLCA4 Missense_Mutation p.R679W 0.51 tolerated(0.26) benign(0.003) TCGA-EB-A41A-01 1 87810578 87810578 C G LMO4 3'UTR 0.74 TCGA-EB-A41A-01 1 9009479 9009479 C T CA6 Silent p.P79P 0.10 TCGA-EB-A41A-01 1 9067391 9067391 G A SLC2A7 Silent p.I390I 0.66 TCGA-EB-A41A-01 1 91861874 91861874 C T HFM1 Missense_Mutation p.E54K 0.16 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-EB-A41A-01 1 92149380 92149380 G A TGFBR3 Silent p.S824S 0.20 TCGA-EB-A41A-01 1 93812348 93812348 T C DR1 Missense_Mutation p.L49P 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-EB-A41A-01 1 94480247 94480247 C T ABCA4 Splice_Site p.X1771_splice 0.30 TCGA-EB-A41A-01 1 94502711 94502711 G A ABCA4 Missense_Mutation p.P1268L 0.30 deleterious(0.01) possibly_damaging(0.754) TCGA-EB-A41A-01 1 94568678 94568678 C T ABCA4 Missense_Mutation p.D155N 0.17 tolerated(0.09) benign(0.016) TCGA-EB-A41A-01 1 94674448 94674448 G A ARHGAP29 Silent p.F150F 0.55 TCGA-EB-A41A-01 1 97770838 97770838 C T DPYD Missense_Mutation p.R759Q 0.28 tolerated(0.15) benign(0.063) TCGA-EB-A41A-01 1 98187151 98187151 G A DPYD Missense_Mutation p.S133F 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 20 10265407 10265407 G A SNAP25 Silent p.L50L 0.29 TCGA-EB-A41A-01 20 10393935 10393935 G A MKKS Silent p.I76I 0.44 TCGA-EB-A41A-01 20 13269245 13269245 G A ISM1 Silent p.G234G 0.29 TCGA-EB-A41A-01 20 13756547 13756547 A G ESF1 Missense_Mutation p.L336S 0.38 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 20 14307246 14307246 G A FLRT3 Missense_Mutation p.R303C 0.45 deleterious(0) possibly_damaging(0.846) TCGA-EB-A41A-01 20 1551740 1551740 C T SIRPB1 Silent p.E265E 0.34 TCGA-EB-A41A-01 20 18005279 18005279 C T OVOL2 3'UTR 0.40 TCGA-EB-A41A-01 20 18477878 18477878 G A RBBP9 5'UTR 0.44 TCGA-EB-A41A-01 20 19673952 19673952 C T SLC24A3 Silent p.F458F 0.43 TCGA-EB-A41A-01 20 20079400 20079400 C T C20orf26 Silent p.F267F 0.41 TCGA-EB-A41A-01 20 20150059 20150059 C T C20orf26 Missense_Mutation p.T447I 0.07 tolerated(0.12) benign(0.203) TCGA-EB-A41A-01 20 20150090 20150090 G A C20orf26 Silent p.R457R 0.32 TCGA-EB-A41A-01 20 20269303 20269303 C T C20orf26 Silent p.A949A 0.43 TCGA-EB-A41A-01 20 20322515 20322515 C T C20orf26 Missense_Mutation p.R1155C 0.41 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 20 210460 210460 C T DEFB129 3'UTR 0.10 TCGA-EB-A41A-01 20 2321273 2321273 G A TGM3 3'UTR 0.45 TCGA-EB-A41A-01 20 23432486 23432486 C T CST11 Silent p.T100T 0.33 TCGA-EB-A41A-01 20 23965793 23965793 C T GGTLC1 3'UTR 0.33 TCGA-EB-A41A-01 20 2559842 2559842 C T TMC2 Silent p.I232I 0.29 TCGA-EB-A41A-01 20 2845063 2845063 C T VPS16 Silent p.F591F 0.41 TCGA-EB-A41A-01 20 29961070 29961070 C T DEFB118 3'UTR 0.67 TCGA-EB-A41A-01 20 29978300 29978300 G A DEFB119 5'Flank 0.43 TCGA-EB-A41A-01 20 30053355 30053355 G A DEFB124 Missense_Mutation p.S57F 0.42 deleterious_low_confidence(0.03) benign(0.096) TCGA-EB-A41A-01 20 30745606 30745606 C T TM9SF4 Missense_Mutation p.P447S 0.42 tolerated(0.4) benign(0.006) TCGA-EB-A41A-01 20 30753342 30753342 C T TM9SF4 3'UTR 0.37 TCGA-EB-A41A-01 20 31041120 31041120 T - C20orf112 Frame_Shift_Del p.N251Tfs*5 0.29 TCGA-EB-A41A-01 20 31375078 31375078 C T DNMT3B Missense_Mutation p.P159S 0.16 tolerated_low_confidence(0.92) benign(0.003) TCGA-EB-A41A-01 20 31671373 31671373 C T BPIFB4 Missense_Mutation p.R124C 0.41 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-EB-A41A-01 20 31827711 31827711 G A BPIFA1 Silent p.V141V 0.45 TCGA-EB-A41A-01 20 33329294 33329294 G A NCOA6 Missense_Mutation p.S1589F 0.36 probably_damaging(0.998) TCGA-EB-A41A-01 20 33346673 33346673 G A NCOA6 Missense_Mutation p.S193F 0.38 probably_damaging(0.981) TCGA-EB-A41A-01 20 33568446 33568446 C T MYH7B Silent p.S178S 0.33 TCGA-EB-A41A-01 20 3674184 3674184 T G SIGLEC1 Missense_Mutation p.T1140P 0.41 deleterious(0) probably_damaging(0.962) TCGA-EB-A41A-01 20 36870211 36870211 G A KIAA1755 Nonsense_Mutation p.Q108* 0.39 TCGA-EB-A41A-01 20 3765347 3765347 A G CENPB Missense_Mutation p.L595P 0.40 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-EB-A41A-01 20 3838336 3838336 C T MAVS Missense_Mutation p.L58F 0.42 deleterious(0.05) possibly_damaging(0.637) TCGA-EB-A41A-01 20 39801155 39801155 C T PLCG1 Silent p.F1000F 0.43 TCGA-EB-A41A-01 20 40827982 40827982 C T PTPRT Missense_Mutation p.E797K 0.39 tolerated(0.44) benign(0.214) TCGA-EB-A41A-01 20 40827983 40827983 C T PTPRT Silent p.R796R 0.39 TCGA-EB-A41A-01 20 42196586 42196586 G A SGK2 Missense_Mutation p.A119T 0.36 tolerated(0.19) benign(0.003) TCGA-EB-A41A-01 20 428547 428547 G A TBC1D20 Missense_Mutation p.P81L 0.47 tolerated(0.89) benign(0.001) TCGA-EB-A41A-01 20 43047108 43047108 G A HNF4A Missense_Mutation p.G231E 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 20 43723342 43723342 C A KCNS1 3'UTR 0.44 TCGA-EB-A41A-01 20 43851563 43851563 C T SEMG2 Silent p.S430S 0.43 TCGA-EB-A41A-01 20 43933123 43933123 C T MATN4 Missense_Mutation p.G130S 0.41 probably_damaging(0.95) TCGA-EB-A41A-01 20 45130860 45130860 C T ZNF334 Missense_Mutation p.G373E 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 20 45131119 45131119 G A ZNF334 Missense_Mutation p.H287Y 0.41 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 20 46307544 46307544 G A SULF2 Missense_Mutation p.P357S 0.44 tolerated(0.12) probably_damaging(1) TCGA-EB-A41A-01 20 46365593 46365593 G A SULF2 Missense_Mutation p.P90L 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 20 46365594 46365594 G A SULF2 Missense_Mutation p.P90S 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 20 4680239 4680239 C T PRNP Missense_Mutation p.L125F 0.44 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 20 49194954 49194954 C T PTPN1 Intron 0.43 TCGA-EB-A41A-01 20 49620811 49620811 G A KCNG1 Missense_Mutation p.P436L 0.41 tolerated(0.66) probably_damaging(0.997) TCGA-EB-A41A-01 20 49620812 49620812 G A KCNG1 Missense_Mutation p.P436S 0.41 tolerated(0.12) probably_damaging(0.993) TCGA-EB-A41A-01 20 51870209 51870209 G A TSHZ2 Missense_Mutation p.G71E 0.35 tolerated(0.18) possibly_damaging(0.888) TCGA-EB-A41A-01 20 60866818 60866818 C T OSBPL2 Missense_Mutation p.R437W 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 20 60885991 60885991 G A LAMA5 Silent p.S3416S 0.50 TCGA-EB-A41A-01 20 61039994 61039994 G A GATA5 Silent p.F364F 0.40 TCGA-EB-A41A-01 20 61040517 61040517 G A GATA5 Missense_Mutation p.S306F 0.33 deleterious(0) benign(0.444) TCGA-EB-A41A-01 20 61513517 61513517 G A DIDO1 Missense_Mutation p.P1264L 0.45 probably_damaging(0.998) TCGA-EB-A41A-01 20 61574527 61574527 C T GID8 Missense_Mutation p.H103Y 0.16 deleterious(0.03) benign(0.314) TCGA-EB-A41A-01 20 62038586 62038586 C T KCNQ2 Missense_Mutation p.R677Q 0.47 tolerated(0.07) possibly_damaging(0.579) TCGA-EB-A41A-01 20 62196247 62196247 G A HELZ2 Missense_Mutation p.P1310S 0.38 tolerated(1) benign(0.001) TCGA-EB-A41A-01 20 62407174 62407174 G A ZBTB46 Missense_Mutation p.A360V 0.37 tolerated(0.15) benign(0.005) TCGA-EB-A41A-01 20 62517393 62517393 T C TPD52L2 Silent p.F167F 0.40 TCGA-EB-A41A-01 21 10862657 10862657 C T IGHV1OR21-1 Silent p.V12V 0.08 TCGA-EB-A41A-01 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.11 tolerated(0.06) benign(0.063) TCGA-EB-A41A-01 21 10942959 10942959 G A TPTE Missense_Mutation p.H210Y 0.08 tolerated(0.7) benign(0.017) TCGA-EB-A41A-01 21 10942983 10942983 G A TPTE Silent p.L202L 0.13 TCGA-EB-A41A-01 21 11020874 11020874 C T BAGE2 RNA 0.13 TCGA-EB-A41A-01 21 11026742 11026742 C T BAGE2 RNA 0.14 TCGA-EB-A41A-01 21 11029674 11029674 G A BAGE2 RNA 0.07 TCGA-EB-A41A-01 21 11039415 11039415 C T BAGE2 RNA 0.06 TCGA-EB-A41A-01 21 11039421 11039421 C T BAGE2 RNA 0.06 TCGA-EB-A41A-01 21 11058273 11058273 C T BAGE2 RNA 0.07 TCGA-EB-A41A-01 21 14982959 14982959 G A POTED Missense_Mutation p.R137Q 0.80 tolerated(0.45) benign(0.01) TCGA-EB-A41A-01 21 15538731 15538731 G A LIPI Missense_Mutation p.P250S 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-EB-A41A-01 21 15918538 15918539 - T SAMSN1 Intron 0.30 TCGA-EB-A41A-01 21 19647617 19647617 G A TMPRSS15 Missense_Mutation p.P934L 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 21 34924274 34924274 C T SON Missense_Mutation p.P913S 0.46 possibly_damaging(0.641) TCGA-EB-A41A-01 21 35229048 35229048 G A ITSN1 Missense_Mutation p.D1224N 0.41 deleterious(0) benign(0.403) TCGA-EB-A41A-01 21 39086751 39086752 - A KCNJ6 Frame_Shift_Ins p.I237Yfs*33 0.31 TCGA-EB-A41A-01 21 39671949 39671949 C T KCNJ15 Missense_Mutation p.H256Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 21 40778102 40778102 C T LCA5L Silent p.G573G 0.40 TCGA-EB-A41A-01 21 41450723 41450723 G A DSCAM Silent p.I1534I 0.36 TCGA-EB-A41A-01 21 41559170 41559170 G A DSCAM Silent p.P889P 0.34 TCGA-EB-A41A-01 21 41559171 41559171 G A DSCAM Missense_Mutation p.P889L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41A-01 21 42064860 42064860 G A DSCAM Silent p.V128V 0.51 TCGA-EB-A41A-01 21 43711285 43711285 G A ABCG1 Missense_Mutation p.A505T 0.17 deleterious(0) possibly_damaging(0.897) TCGA-EB-A41A-01 21 43833320 43833320 C T UBASH3A Missense_Mutation p.S181F 0.44 deleterious(0) possibly_damaging(0.824) TCGA-EB-A41A-01 21 43999910 43999910 C T SLC37A1 Missense_Mutation p.P529L 0.55 tolerated_low_confidence(0.24) benign(0.002) TCGA-EB-A41A-01 21 44182286 44182286 C T PDE9A Silent p.L393L 0.44 TCGA-EB-A41A-01 21 44482443 44482443 G A CBS Silent p.I339I 0.30 TCGA-EB-A41A-01 21 44485521 44485521 G A CBS Silent p.I214I 0.46 TCGA-EB-A41A-01 21 46596376 46596376 G A ADARB1 Missense_Mutation p.E254K 0.41 deleterious(0.03) probably_damaging(0.986) TCGA-EB-A41A-01 21 46705812 46705812 C T POFUT2 Missense_Mutation p.G55S 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 21 46900038 46900038 C T COL18A1 Missense_Mutation p.P636S 0.47 unknown(0) TCGA-EB-A41A-01 21 46900039 46900039 C T COL18A1 Missense_Mutation p.P636L 0.47 unknown(0) TCGA-EB-A41A-01 21 46945788 46945788 G A SLC19A1 Silent p.T412T 0.21 TCGA-EB-A41A-01 21 47418065 47418065 G A COL6A1 Missense_Mutation p.E519K 0.45 tolerated(0.63) probably_damaging(0.93) TCGA-EB-A41A-01 21 47809287 47809287 C T PCNT Nonsense_Mutation p.Q1261* 0.42 TCGA-EB-A41A-01 22 16287813 16287813 C T POTEH Missense_Mutation p.G25S 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EB-A41A-01 22 16287928 16287928 C T POTEH 5'UTR 0.17 TCGA-EB-A41A-01 22 21332267 21332267 C T AIFM3 Missense_Mutation p.P484S 0.64 tolerated(0.57) possibly_damaging(0.621) TCGA-EB-A41A-01 22 21344792 21344792 C T LZTR1 Nonsense_Mutation p.Q257* 0.24 TCGA-EB-A41A-01 22 22277365 22277365 G A PPM1F 3'UTR 0.11 TCGA-EB-A41A-01 22 22661564 22661564 C T BMS1P20 RNA 0.14 TCGA-EB-A41A-01 22 23165518 23165518 C T IGLV2-8 Missense_Mutation p.S30F 0.77 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A41A-01 22 23165519 23165519 C T IGLV2-8 Silent p.S30S 0.78 TCGA-EB-A41A-01 22 24219284 24219284 C T AP000350.10 Silent p.L119L 0.77 TCGA-EB-A41A-01 22 24829703 24829703 C T ADORA2A Missense_Mutation p.R111W 0.80 deleterious(0) possibly_damaging(0.636) TCGA-EB-A41A-01 22 26423248 26423248 G A MYO18B Silent p.K2436K 0.73 TCGA-EB-A41A-01 22 26932302 26932302 G A TPST2 Silent p.P331P 0.43 TCGA-EB-A41A-01 22 29456683 29456683 A T C22orf31 Missense_Mutation p.I51N 0.79 tolerated_low_confidence(0.06) benign(0.406) TCGA-EB-A41A-01 22 30951160 30951160 G A GAL3ST1 Missense_Mutation p.A351V 0.58 deleterious(0.01) probably_damaging(0.943) TCGA-EB-A41A-01 22 32589187 32589187 G A RFPL2 Intron 0.27 TCGA-EB-A41A-01 22 35812784 35812784 G A MCM5 Missense_Mutation p.E523K 0.70 tolerated(0.13) benign(0.349) TCGA-EB-A41A-01 22 36537052 36537052 T A APOL3 3'UTR 0.82 TCGA-EB-A41A-01 22 37699389 37699389 G A CYTH4 Silent p.V214V 0.68 TCGA-EB-A41A-01 22 39219261 39219261 G A NPTXR Nonsense_Mutation p.Q369* 0.93 TCGA-EB-A41A-01 22 41244301 41244301 G A ST13 Silent p.L81L 0.78 TCGA-EB-A41A-01 22 41573426 41573426 A C EP300 Missense_Mutation p.Q1904P 0.08 possibly_damaging(0.84) TCGA-EB-A41A-01 22 41832492 41832492 A - TOB2 Frame_Shift_Del p.F286Lfs*42 0.96 TCGA-EB-A41A-01 22 42992243 42992243 G A POLDIP3 Silent p.S254S 0.67 TCGA-EB-A41A-01 22 43089704 43089704 G A A4GALT Missense_Mutation p.S85L 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41A-01 22 44681404 44681404 G A KIAA1644 Missense_Mutation p.P168L 0.83 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A41A-01 22 46860045 46860045 G A CELSR1 Nonsense_Mutation p.Q1248* 0.10 TCGA-EB-A41A-01 2 102835453 102835453 G A IL1RL2 Silent p.K255K 0.39 TCGA-EB-A41A-01 2 103281650 103281650 G A SLC9A2 Missense_Mutation p.G282E 0.40 deleterious(0) probably_damaging(0.932) TCGA-EB-A41A-01 2 103310937 103310937 C T SLC9A2 Missense_Mutation p.A497V 0.35 deleterious(0.01) benign(0.004) TCGA-EB-A41A-01 2 103317545 103317545 G A SLC9A2 Missense_Mutation p.D535N 0.28 tolerated(0.73) benign(0.004) TCGA-EB-A41A-01 2 107007391 107007391 G A PLGLA RNA 0.28 TCGA-EB-A41A-01 2 107007392 107007392 G A PLGLA RNA 0.28 TCGA-EB-A41A-01 2 107040462 107040462 C T RGPD3 Missense_Mutation p.E1321K 0.32 tolerated(0.17) benign(0.124) TCGA-EB-A41A-01 2 107459984 107459984 G A ST6GAL2 Silent p.F150F 0.36 TCGA-EB-A41A-01 2 108627267 108627267 G A SLC5A7 Missense_Mutation p.D565N 0.48 tolerated_low_confidence(0.18) benign(0) TCGA-EB-A41A-01 2 10863043 10863043 A C ATP6V1C2 Missense_Mutation p.N23T 0.19 tolerated(0.07) benign(0.285) TCGA-EB-A41A-01 2 109399125 109399125 C T RANBP2 Missense_Mutation p.S3059L 0.39 deleterious(0) possibly_damaging(0.682) TCGA-EB-A41A-01 2 11053443 11053443 C T KCNF1 Silent p.I297I 0.54 TCGA-EB-A41A-01 2 110962620 110962620 G A NPHP1 5'Flank 0.38 TCGA-EB-A41A-01 2 111408297 111408297 G A BUB1 Missense_Mutation p.R677C 0.11 tolerated(0.16) benign(0.001) TCGA-EB-A41A-01 2 113138418 113138418 G A RGPD8 Missense_Mutation p.L1682F 0.31 tolerated_low_confidence(0.11) possibly_damaging(0.645) TCGA-EB-A41A-01 2 113147053 113147053 C T RGPD8 Missense_Mutation p.E1157K 0.18 deleterious(0.04) probably_damaging(0.977) TCGA-EB-A41A-01 2 113670559 113670559 T A IL37 5'UTR 0.44 TCGA-EB-A41A-01 2 113764255 113764255 G A IL36A Missense_Mutation p.G69R 0.41 tolerated(0.18) benign(0.088) TCGA-EB-A41A-01 2 113940513 113940513 C T PSD4 Silent p.I160I 0.36 TCGA-EB-A41A-01 2 114195348 114195348 C T CBWD2 5'UTR 0.27 TCGA-EB-A41A-01 2 114195349 114195349 C T CBWD2 5'UTR 0.28 TCGA-EB-A41A-01 2 120385353 120385353 C T PCDP1 Silent p.S547S 0.40 TCGA-EB-A41A-01 2 121107018 121107018 C T INHBB Silent p.F264F 0.40 TCGA-EB-A41A-01 2 121745873 121745873 G A GLI2 Missense_Mutation p.E795K 0.82 tolerated(0.06) possibly_damaging(0.824) TCGA-EB-A41A-01 2 125405445 125405445 G A CNTNAP5 Missense_Mutation p.E662K 0.41 deleterious(0.02) benign(0.371) TCGA-EB-A41A-01 2 1263153 1263153 C T SNTG2 Silent p.F339F 0.36 TCGA-EB-A41A-01 2 130872849 130872849 G A POTEF Silent p.L192L 0.12 TCGA-EB-A41A-01 2 131688755 131688755 G A ARHGEF4 Silent p.Q75Q 0.45 TCGA-EB-A41A-01 2 133175449 133175449 G A GPR39 Silent p.R278R 0.42 TCGA-EB-A41A-01 2 135960482 135960482 G A ZRANB3 Missense_Mutation p.H1021Y 0.54 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 2 136545942 136545942 C T LCT Silent p.G1912G 0.35 TCGA-EB-A41A-01 2 136575298 136575298 G A LCT Silent p.V440V 0.44 TCGA-EB-A41A-01 2 136873274 136873274 T A CXCR4 Missense_Mutation p.K79M 0.46 deleterious(0.02) possibly_damaging(0.904) TCGA-EB-A41A-01 2 141473590 141473590 G A LRP1B Missense_Mutation p.S1992F 0.40 possibly_damaging(0.788) TCGA-EB-A41A-01 2 141777573 141777573 C T LRP1B Missense_Mutation p.E630K 0.42 possibly_damaging(0.549) TCGA-EB-A41A-01 2 1426855 1426855 G A TPO Missense_Mutation p.E45K 0.33 tolerated(0.37) benign(0.006) TCGA-EB-A41A-01 2 145158826 145158826 C T ZEB2 Missense_Mutation p.E286K 0.37 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 2 149227016 149227016 C T MBD5 Missense_Mutation p.P502S 0.44 deleterious(0) possibly_damaging(0.803) TCGA-EB-A41A-01 2 152236078 152236078 G C TNFAIP6 3'UTR 0.36 TCGA-EB-A41A-01 2 152427053 152427053 G A NEB Silent p.I5692I 0.31 TCGA-EB-A41A-01 2 152496506 152496506 C T NEB Silent p.V2918V 0.39 TCGA-EB-A41A-01 2 152518750 152518750 C T NEB Missense_Mutation p.E1957K 0.40 probably_damaging(0.915) TCGA-EB-A41A-01 2 152554088 152554088 G A NEB Silent p.L409L 0.48 TCGA-EB-A41A-01 2 152580830 152580830 G A NEB Missense_Mutation p.P186S 0.27 possibly_damaging(0.709) TCGA-EB-A41A-01 2 153514483 153514483 G A PRPF40A Missense_Mutation p.R874W 0.60 deleterious(0.01) unknown(0) TCGA-EB-A41A-01 2 153535902 153535902 G A PRPF40A Missense_Mutation p.R181C 0.45 deleterious(0.03) probably_damaging(0.978) TCGA-EB-A41A-01 2 154800906 154800906 G A GALNT13 Splice_Site 0.55 TCGA-EB-A41A-01 2 154996894 154996894 G A GALNT13 Missense_Mutation p.A63T 0.43 deleterious(0.01) possibly_damaging(0.461) TCGA-EB-A41A-01 2 162273369 162273369 C T TBR1 Missense_Mutation p.P150S 0.41 tolerated(0.53) probably_damaging(0.968) TCGA-EB-A41A-01 2 162751222 162751222 C T SLC4A10 Missense_Mutation p.R410C 0.54 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 2 162870933 162870933 G A DPP4 Missense_Mutation p.S537F 0.38 deleterious(0.02) probably_damaging(0.964) TCGA-EB-A41A-01 2 163051247 163051247 G A FAP Missense_Mutation p.P472S 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 2 163291710 163291710 C T KCNH7 Missense_Mutation p.G651D 0.41 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 2 165351035 165351035 C T GRB14 Splice_Site p.X461_splice 0.42 TCGA-EB-A41A-01 2 165793870 165793870 C T SLC38A11 Missense_Mutation p.G147S 0.37 tolerated(0.41) benign(0.011) TCGA-EB-A41A-01 2 165997477 165997477 G A SCN3A Missense_Mutation p.S568F 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A41A-01 2 166847802 166847802 C T SCN1A Missense_Mutation p.E1995K 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.876) TCGA-EB-A41A-01 2 166868650 166868650 G A SCN1A Missense_Mutation p.A1283V 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A41A-01 2 166892867 166892867 C G SCN1A Missense_Mutation p.R1040S 0.40 tolerated(0.22) benign(0.184) TCGA-EB-A41A-01 2 167055231 167055231 C T SCN9A Missense_Mutation p.R1962K 0.43 tolerated_low_confidence(1) benign(0.001) TCGA-EB-A41A-01 2 167284417 167284417 C T SCN7A Missense_Mutation p.G912R 0.43 tolerated(0.63) benign(0.005) TCGA-EB-A41A-01 2 168100507 168100507 G A XIRP2 Missense_Mutation p.G869S 0.34 probably_damaging(1) TCGA-EB-A41A-01 2 168106341 168106341 G A XIRP2 Silent p.G2813G 0.40 TCGA-EB-A41A-01 2 168725972 168725972 C T B3GALT1 Silent p.I141I 0.41 TCGA-EB-A41A-01 2 168726189 168726189 C T B3GALT1 Missense_Mutation p.R214W 0.33 deleterious(0.03) probably_damaging(0.973) TCGA-EB-A41A-01 2 169985288 169985288 G A LRP2 Missense_Mutation p.S4618L 0.41 benign(0.113) TCGA-EB-A41A-01 2 170151172 170151172 T C LRP2 Missense_Mutation p.N159S 0.40 benign(0.282) TCGA-EB-A41A-01 2 170470973 170470973 G A PPIG Splice_Site p.X126_splice 0.44 TCGA-EB-A41A-01 2 171811210 171811210 C T GORASP2 Missense_Mutation p.P206L 0.35 deleterious(0.02) benign(0) TCGA-EB-A41A-01 2 171867950 171867950 G A TLK1 Missense_Mutation p.P450L 0.37 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 2 172585282 172585282 C T DYNC1I2 Missense_Mutation p.S438F 0.44 deleterious(0) possibly_damaging(0.707) TCGA-EB-A41A-01 2 175324620 175324620 G A GPR155 Missense_Mutation p.S586F 0.07 tolerated(0.11) benign(0.181) TCGA-EB-A41A-01 2 17692210 17692210 G A RAD51AP2 Missense_Mutation p.P1114L 0.16 deleterious(0) benign(0.098) TCGA-EB-A41A-01 2 176982186 176982186 G A HOXD10 Missense_Mutation p.E209K 0.32 tolerated(0.5) benign(0) TCGA-EB-A41A-01 2 177036896 177036896 A G HOXD3 Missense_Mutation p.N398S 0.33 tolerated(0.9) possibly_damaging(0.874) TCGA-EB-A41A-01 2 179393407 179393407 C T TTN Missense_Mutation p.D35691N 0.40 TCGA-EB-A41A-01 2 179404091 179404091 G A TTN Intron 0.43 TCGA-EB-A41A-01 2 179418802 179418802 C T TTN Missense_Mutation p.G29679E 0.43 TCGA-EB-A41A-01 2 179422000 179422001 - CT TTN Frame_Shift_Ins p.V29330Efs*72 0.27 TCGA-EB-A41A-01 2 179425838 179425838 C T TTN Missense_Mutation p.E28341K 0.40 TCGA-EB-A41A-01 2 179427599 179427599 A T TTN Missense_Mutation p.S27754T 0.44 TCGA-EB-A41A-01 2 179430883 179430883 C T TTN Missense_Mutation p.G26659E 0.40 TCGA-EB-A41A-01 2 179458716 179458716 C T TTN Silent p.R19468R 0.37 TCGA-EB-A41A-01 2 179468656 179468656 C T TTN Missense_Mutation p.G18253E 0.47 TCGA-EB-A41A-01 2 179477564 179477564 C T TTN Silent p.V16628V 0.33 TCGA-EB-A41A-01 2 179477793 179477793 G A TTN Missense_Mutation p.P16552L 0.36 TCGA-EB-A41A-01 2 179480413 179480413 C T TTN Missense_Mutation p.E16139K 0.31 TCGA-EB-A41A-01 2 179480415 179480415 C T TTN Missense_Mutation p.G16138E 0.31 TCGA-EB-A41A-01 2 179498021 179498021 C T TTN Missense_Mutation p.G14327R 0.42 TCGA-EB-A41A-01 2 179547541 179547541 C T TTN Missense_Mutation p.E10993K 0.40 TCGA-EB-A41A-01 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.52 TCGA-EB-A41A-01 2 179580394 179580394 A T TTN Missense_Mutation p.W8583R 0.38 TCGA-EB-A41A-01 2 179588871 179588871 C T TTN Splice_Site p.X7039_splice 0.24 TCGA-EB-A41A-01 2 179595520 179595520 C T TTN Splice_Site p.X5914_splice 0.43 TCGA-EB-A41A-01 2 179614899 179614899 C T TTN Intron 0.36 TCGA-EB-A41A-01 2 179615363 179615363 C T TTN Intron 0.40 TCGA-EB-A41A-01 2 179638751 179638751 C T TTN Missense_Mutation p.E2382K 0.46 TCGA-EB-A41A-01 2 179640795 179640795 C T TTN Silent p.R1932R 0.39 TCGA-EB-A41A-01 2 179647762 179647762 A C TTN Silent p.G957G 0.38 TCGA-EB-A41A-01 2 179665278 179665278 C T TTN Missense_Mutation p.E143K 0.39 TCGA-EB-A41A-01 2 179702427 179702427 C T CCDC141 Silent p.G1173G 0.43 TCGA-EB-A41A-01 2 182423429 182423429 G A CERKL Silent p.V254V 0.34 TCGA-EB-A41A-01 2 183104905 183104905 C T PDE1A Silent p.K110K 0.34 TCGA-EB-A41A-01 2 185802353 185802353 G A ZNF804A Missense_Mutation p.D744N 0.44 tolerated(0.08) benign(0.135) TCGA-EB-A41A-01 2 186680154 186680154 G A FSIP2 Missense_Mutation p.M6883I 0.50 probably_damaging(0.97) TCGA-EB-A41A-01 2 188210949 188210949 C T CALCRL Missense_Mutation p.E450K 0.40 deleterious(0.04) benign(0.009) TCGA-EB-A41A-01 2 189855065 189855065 C T COL3A1 Silent p.F259F 0.38 TCGA-EB-A41A-01 2 189875398 189875398 C T COL3A1 Missense_Mutation p.P1346S 0.38 unknown(0) TCGA-EB-A41A-01 2 190437583 190437583 C T SLC40A1 Missense_Mutation p.G126R 0.50 deleterious(0) probably_damaging(0.93) TCGA-EB-A41A-01 2 192701089 192701089 G A SDPR Nonsense_Mutation p.Q280* 0.40 TCGA-EB-A41A-01 2 193044321 193044321 G A TMEFF2 Intron 0.34 TCGA-EB-A41A-01 2 19553358 19553358 G A OSR1 Missense_Mutation p.S70F 0.17 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-EB-A41A-01 2 196689091 196689091 C T DNAH7 Missense_Mutation p.G3060E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EB-A41A-01 2 196698946 196698946 G A DNAH7 Silent p.I3028I 0.40 TCGA-EB-A41A-01 2 197870635 197870635 C G ANKRD44 Splice_Site p.X686_splice 0.40 TCGA-EB-A41A-01 2 200137218 200137218 G A SATB2 Missense_Mutation p.P640S 0.48 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 2 201876190 201876190 G A FAM126B Silent p.I113I 0.43 TCGA-EB-A41A-01 2 202000749 202000749 C T CFLAR Nonsense_Mutation p.Q148* 0.42 TCGA-EB-A41A-01 2 202550653 202550653 G T MPP4 Missense_Mutation p.Q161K 0.33 tolerated(1) benign(0.008) TCGA-EB-A41A-01 2 203424585 203424585 C T BMPR2 Silent p.S1011S 0.52 TCGA-EB-A41A-01 2 206265756 206265756 G A PARD3B Missense_Mutation p.D822N 0.42 deleterious(0) benign(0.359) TCGA-EB-A41A-01 2 206659854 206659854 C T NRP2 3'UTR 0.33 TCGA-EB-A41A-01 2 206869256 206869256 G A INO80D Nonsense_Mutation p.Q974* 0.38 TCGA-EB-A41A-01 2 207454132 207454132 G A ADAM23 Splice_Site p.X618_splice 0.46 TCGA-EB-A41A-01 2 208994267 208994267 G T CRYGC Missense_Mutation p.N50K 0.36 deleterious(0.02) possibly_damaging(0.836) TCGA-EB-A41A-01 2 209036794 209036794 G A C2orf80 Silent p.P124P 0.45 TCGA-EB-A41A-01 2 209190269 209190269 C T PIKFYVE Missense_Mutation p.P912S 0.36 tolerated_low_confidence(0.86) benign(0) TCGA-EB-A41A-01 2 209190270 209190270 C T PIKFYVE Missense_Mutation p.P912L 0.37 tolerated_low_confidence(0.34) benign(0) TCGA-EB-A41A-01 2 211302426 211302426 G A LANCL1 Silent p.I287I 0.36 TCGA-EB-A41A-01 2 21225343 21225343 C T APOB Silent p.L4317L 0.47 TCGA-EB-A41A-01 2 21229248 21229248 C T APOB Missense_Mutation p.G3498R 0.38 probably_damaging(0.939) TCGA-EB-A41A-01 2 218999528 218999528 G A CXCR2 Missense_Mutation p.E2K 0.43 tolerated_low_confidence(0.25) benign(0.018) TCGA-EB-A41A-01 2 219679845 219679845 G A CYP27A1 3'UTR 0.41 TCGA-EB-A41A-01 2 220326617 220326617 C T SPEG Silent p.S818S 0.20 TCGA-EB-A41A-01 2 225651759 225651759 G A DOCK10 Missense_Mutation p.R1879C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 2 227896736 227896736 C T COL4A4 Missense_Mutation p.G1248R 0.38 unknown(0) TCGA-EB-A41A-01 2 228153875 228153875 G A COL4A3 Missense_Mutation p.G964E 0.48 unknown(0) TCGA-EB-A41A-01 2 228883146 228883146 G T SPHKAP Silent p.P808P 0.23 TCGA-EB-A41A-01 2 228883926 228883926 G A SPHKAP Silent p.S548S 0.40 TCGA-EB-A41A-01 2 228884867 228884867 C T SPHKAP Missense_Mutation p.E235K 0.38 deleterious(0) probably_damaging(0.937) TCGA-EB-A41A-01 2 228892229 228892229 C T SPHKAP Missense_Mutation p.D93N 0.53 deleterious(0.04) benign(0.046) TCGA-EB-A41A-01 2 230377560 230377560 C T DNER Silent p.A362A 0.37 TCGA-EB-A41A-01 2 230636299 230636299 G A TRIP12 Missense_Mutation p.S1840L 0.38 deleterious(0) probably_damaging(0.992) TCGA-EB-A41A-01 2 233246359 233246359 G T ALPP Missense_Mutation p.A488S 0.35 tolerated(0.21) probably_damaging(0.983) TCGA-EB-A41A-01 2 234638043 234638043 C T UGT1A3 Missense_Mutation p.R91C 0.38 tolerated(0.05) possibly_damaging(0.67) TCGA-EB-A41A-01 2 234678278 234678278 G A UGT1A10 Intron 0.35 TCGA-EB-A41A-01 2 234678279 234678279 G A UGT1A10 Intron 0.38 TCGA-EB-A41A-01 2 237374145 237374145 C T IQCA1 Intron 0.56 TCGA-EB-A41A-01 2 238245121 238245121 C T COL6A3 Silent p.T2874T 0.40 TCGA-EB-A41A-01 2 238277457 238277457 C T COL6A3 Missense_Mutation p.G1550E 0.37 probably_damaging(0.998) TCGA-EB-A41A-01 2 238289811 238289811 C T COL6A3 Silent p.G548G 0.41 TCGA-EB-A41A-01 2 239016464 239016464 G A ESPNL Silent p.R235R 0.56 TCGA-EB-A41A-01 2 242396195 242396195 C T FARP2 Missense_Mutation p.S482F 0.41 tolerated(0.74) benign(0.003) TCGA-EB-A41A-01 2 242396196 242396196 C T FARP2 Silent p.S482S 0.40 TCGA-EB-A41A-01 2 26684664 26684664 C T OTOF Silent p.K1811K 0.42 TCGA-EB-A41A-01 2 27361066 27361066 G A C2orf53 Silent p.L44L 0.44 TCGA-EB-A41A-01 2 27447261 27447261 C T CAD Missense_Mutation p.P386L 0.43 tolerated(0.09) benign(0) TCGA-EB-A41A-01 2 27695119 27695119 G A IFT172 Missense_Mutation p.R508C 0.28 deleterious(0) probably_damaging(0.979) TCGA-EB-A41A-01 2 28828773 28828773 G A PLB1 Silent p.Q1005Q 0.42 TCGA-EB-A41A-01 2 28852029 28852029 G A PLB1 Silent p.G1265G 0.46 TCGA-EB-A41A-01 2 29258408 29258408 G A FAM179A Silent p.R768R 0.30 TCGA-EB-A41A-01 2 31147119 31147119 C T GALNT14 Missense_Mutation p.E421K 0.43 tolerated(0.56) possibly_damaging(0.46) TCGA-EB-A41A-01 2 31805913 31805913 G A SRD5A2 RNA 0.33 TCGA-EB-A41A-01 2 32475054 32475054 C T NLRC4 Missense_Mutation p.A627T 0.44 tolerated(1) benign(0.001) TCGA-EB-A41A-01 2 32481904 32481904 G A NLRC4 5'UTR 0.41 TCGA-EB-A41A-01 2 32602682 32602682 C T BIRC6 Nonsense_Mutation p.Q118* 0.50 TCGA-EB-A41A-01 2 32640582 32640582 C A BIRC6 Missense_Mutation p.D741E 0.45 probably_damaging(0.988) TCGA-EB-A41A-01 2 33740145 33740145 G A RASGRP3 5'UTR 0.48 TCGA-EB-A41A-01 2 37395162 37395162 C T SULT6B1 Silent p.Q238Q 0.44 TCGA-EB-A41A-01 2 38224644 38224644 A C RMDN2 Missense_Mutation p.H522P 0.42 deleterious(0.01) possibly_damaging(0.561) TCGA-EB-A41A-01 2 40656001 40656001 C T SLC8A1 Missense_Mutation p.E474K 0.40 tolerated(0.15) benign(0.205) TCGA-EB-A41A-01 2 40656437 40656437 C T SLC8A1 Silent p.R328R 0.42 TCGA-EB-A41A-01 2 43971025 43971025 A G PLEKHH2 Missense_Mutation p.N1151S 0.42 deleterious(0.03) benign(0.254) TCGA-EB-A41A-01 2 46574083 46574083 T C EPAS1 Missense_Mutation p.V33A 0.44 deleterious(0) probably_damaging(0.984) TCGA-EB-A41A-01 2 48914966 48914966 G A LHCGR Missense_Mutation p.S657L 0.47 deleterious(0.01) benign(0.011) TCGA-EB-A41A-01 2 50758449 50758449 G A NRXN1 Silent p.L795L 0.38 TCGA-EB-A41A-01 2 55403062 55403062 A T CLHC1 Missense_Mutation p.V542E 0.33 deleterious(0) possibly_damaging(0.52) TCGA-EB-A41A-01 2 55403063 55403063 C T CLHC1 Missense_Mutation p.V542M 0.32 tolerated(0.42) benign(0.016) TCGA-EB-A41A-01 2 55887307 55887307 G A PNPT1 Silent p.F423F 0.50 TCGA-EB-A41A-01 2 55912144 55912144 G A PNPT1 Missense_Mutation p.P113S 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 2 56145039 56145039 C T EFEMP1 Missense_Mutation p.G93E 0.41 tolerated(1) benign(0.008) TCGA-EB-A41A-01 2 60773232 60773232 G A BCL11A Missense_Mutation p.P87S 0.22 tolerated(0.59) benign(0.029) TCGA-EB-A41A-01 2 60773233 60773233 G A BCL11A Silent p.S86S 0.23 TCGA-EB-A41A-01 2 61118849 61118849 A G REL Silent p.E14E 0.36 TCGA-EB-A41A-01 2 69002331 69002331 G A ARHGAP25 Intron 0.35 TCGA-EB-A41A-01 2 7035934 7035934 G A RSAD2 Missense_Mutation p.G316E 0.30 deleterious(0.02) possibly_damaging(0.831) TCGA-EB-A41A-01 2 70890513 70890513 G A ADD2 3'UTR 0.35 TCGA-EB-A41A-01 2 72359593 72359593 G A CYP26B1 Silent p.F434F 0.35 TCGA-EB-A41A-01 2 74044001 74044001 G A C2orf78 Missense_Mutation p.R884K 0.43 tolerated(0.1) benign(0.373) TCGA-EB-A41A-01 2 74750093 74750093 G A DQX1 Missense_Mutation p.P398L 0.40 deleterious(0.03) benign(0.424) TCGA-EB-A41A-01 2 75907426 75907426 G A GCFC2 Missense_Mutation p.L569F 0.34 deleterious(0) benign(0.428) TCGA-EB-A41A-01 2 79347982 79347982 C T REG1A 5'UTR 0.46 TCGA-EB-A41A-01 2 85066330 85066330 C T TRABD2A Missense_Mutation p.V263M 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 2 86067203 86067203 C T ST3GAL5 3'UTR 0.29 TCGA-EB-A41A-01 2 86373206 86373206 C T IMMT Missense_Mutation p.E550K 0.40 deleterious(0) probably_damaging(0.986) TCGA-EB-A41A-01 2 89246925 89246925 G A IGKV1-5 Missense_Mutation p.S82L 0.41 deleterious(0.01) benign(0.324) TCGA-EB-A41A-01 2 89399515 89399515 C T IGKV1-16 Missense_Mutation p.G63E 0.33 deleterious(0.01) possibly_damaging(0.537) TCGA-EB-A41A-01 2 8998703 8998703 C A MBOAT2 3'UTR 0.27 TCGA-EB-A41A-01 2 97007851 97007851 C T NCAPH Silent p.S112S 0.45 TCGA-EB-A41A-01 2 97368118 97368118 G A LMAN2L 3'Flank 0.42 TCGA-EB-A41A-01 2 97513995 97513995 G A ANKRD39 3'UTR 0.38 TCGA-EB-A41A-01 2 98797648 98797648 G A VWA3B Silent p.P428P 0.45 TCGA-EB-A41A-01 2 98797649 98797649 G A VWA3B Missense_Mutation p.E429K 0.45 deleterious(0.03) possibly_damaging(0.558) TCGA-EB-A41A-01 2 99448879 99448879 C T KIAA1211L Missense_Mutation p.D158N 0.58 deleterious(0) possibly_damaging(0.741) TCGA-EB-A41A-01 3 100963176 100963176 A G IMPG2 Missense_Mutation p.Y667H 0.47 tolerated(0.59) benign(0.003) TCGA-EB-A41A-01 3 102153903 102153903 C T ZPLD1 5'UTR 0.54 TCGA-EB-A41A-01 3 102153987 102153987 G A ZPLD1 Missense_Mutation p.G10E 0.40 tolerated_low_confidence(0.06) benign(0) TCGA-EB-A41A-01 3 105250889 105250889 C T ALCAM Silent p.L146L 0.42 TCGA-EB-A41A-01 3 108568044 108568044 G A TRAT1 Missense_Mutation p.M82I 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 3 10970963 10970963 G A SLC6A11 Missense_Mutation p.E437K 0.48 tolerated(0.11) probably_damaging(0.998) TCGA-EB-A41A-01 3 111368561 111368561 C T CD96 Missense_Mutation p.P556S 0.42 tolerated(0.31) benign(0.236) TCGA-EB-A41A-01 3 111685491 111685491 G A PHLDB2 Missense_Mutation p.E1037K 0.36 deleterious(0) possibly_damaging(0.834) TCGA-EB-A41A-01 3 111844099 111844099 C T GCSAM Missense_Mutation p.E67K 0.33 tolerated(0.34) benign(0.001) TCGA-EB-A41A-01 3 111985166 111985166 C T SLC9C1 Missense_Mutation p.G266E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 3 120673805 120673805 C T STXBP5L Missense_Mutation p.P70S 0.31 deleterious(0) possibly_damaging(0.723) TCGA-EB-A41A-01 3 120760619 120760619 G A STXBP5L Silent p.L120L 0.42 TCGA-EB-A41A-01 3 121616315 121616315 C T SLC15A2 Missense_Mutation p.L92F 0.43 tolerated(0.07) possibly_damaging(0.515) TCGA-EB-A41A-01 3 121646614 121646614 G A SLC15A2 Silent p.R378R 0.35 TCGA-EB-A41A-01 3 121973036 121973036 C T CASR 5'UTR 0.31 TCGA-EB-A41A-01 3 121973124 121973124 G A CASR Missense_Mutation p.G30R 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 3 121973135 121973135 C T CASR Silent p.I33I 0.53 TCGA-EB-A41A-01 3 122003508 122003508 G A CASR Missense_Mutation p.G913R 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.891) TCGA-EB-A41A-01 3 124449230 124449230 G A UMPS 5'UTR 0.33 TCGA-EB-A41A-01 3 124449231 124449231 G A UMPS 5'UTR 0.32 TCGA-EB-A41A-01 3 124829059 124829059 G A SLC12A8 Missense_Mutation p.P345S 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 3 125828828 125828828 C T ALDH1L1 Missense_Mutation p.G779E 0.43 deleterious(0) possibly_damaging(0.521) TCGA-EB-A41A-01 3 126708317 126708317 C T PLXNA1 Missense_Mutation p.S294L 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 3 12790159 12790159 G A TMEM40 Missense_Mutation p.S69F 0.37 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-EB-A41A-01 3 128755913 128755913 G A EFCC1 Missense_Mutation p.E515K 0.32 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 3 131624181 131624181 G A CPNE4 Missense_Mutation p.S36F 0.41 deleterious(0.02) possibly_damaging(0.828) TCGA-EB-A41A-01 3 138174084 138174084 T C ESYT3 Missense_Mutation p.F140L 0.43 tolerated(0.23) benign(0.001) TCGA-EB-A41A-01 3 138738873 138738873 G A PRR23B Missense_Mutation p.P211S 0.43 tolerated(0.13) benign(0.34) TCGA-EB-A41A-01 3 140178575 140178575 G A CLSTN2 Missense_Mutation p.E396K 0.36 tolerated(0.15) benign(0.17) TCGA-EB-A41A-01 3 140265354 140265354 C T CLSTN2 Intron 0.42 TCGA-EB-A41A-01 3 140396972 140396972 G A TRIM42 5'UTR 0.40 TCGA-EB-A41A-01 3 142539803 142539803 C T PCOLCE2 Missense_Mutation p.G345E 0.41 deleterious(0.04) probably_damaging(0.986) TCGA-EB-A41A-01 3 14549187 14549187 C T GRIP2 RNA 0.44 TCGA-EB-A41A-01 3 145913020 145913020 C T PLSCR4 Nonsense_Mutation p.W279* 0.43 TCGA-EB-A41A-01 3 14862351 14862351 C T FGD5 Silent p.S591S 0.41 TCGA-EB-A41A-01 3 149039176 149039176 C T TM4SF18 3'UTR 0.45 TCGA-EB-A41A-01 3 150911442 150911442 C T MED12L Missense_Mutation p.P712S 0.37 deleterious(0.01) benign(0.088) TCGA-EB-A41A-01 3 154834534 154834534 G A MME Nonsense_Mutation p.W174* 0.35 TCGA-EB-A41A-01 3 155199350 155199350 C T PLCH1 Missense_Mutation p.D1497N 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 3 15762492 15762492 G A ANKRD28 Missense_Mutation p.A279V 0.43 deleterious(0) probably_damaging(0.979) TCGA-EB-A41A-01 3 158428644 158428644 T C RARRES1 Missense_Mutation p.T140A 0.47 tolerated(1) benign(0.002) TCGA-EB-A41A-01 3 16217159 16217159 C T GALNT15 Silent p.I167I 0.31 TCGA-EB-A41A-01 3 164733018 164733018 G A SI Missense_Mutation p.P1298S 0.40 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 3 164741506 164741506 G A SI Missense_Mutation p.S984L 0.44 tolerated(0.44) benign(0.001) TCGA-EB-A41A-01 3 164750437 164750437 C T SI Missense_Mutation p.G870E 0.47 tolerated(0.12) possibly_damaging(0.504) TCGA-EB-A41A-01 3 16633556 16633556 C T DAZL Splice_Site p.X298_splice 0.49 TCGA-EB-A41A-01 3 167170732 167170732 C T SERPINI2 Missense_Mutation p.G319E 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 3 168838894 168838894 G A MECOM Missense_Mutation p.S238L 0.48 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 3 169099125 169099125 G A MECOM Silent p.P99P 0.38 TCGA-EB-A41A-01 3 169664561 169664561 G A RP11-379K17.4 RNA 0.43 TCGA-EB-A41A-01 3 169831265 169831265 G T PHC3 Silent p.R746R 0.27 TCGA-EB-A41A-01 3 170198106 170198106 C T SLC7A14 Nonsense_Mutation p.W655* 0.40 TCGA-EB-A41A-01 3 170744530 170744530 C T SLC2A2 5'UTR 0.45 TCGA-EB-A41A-01 3 175520934 175520934 G A NAALADL2 Silent p.Q777Q 0.41 TCGA-EB-A41A-01 3 183754305 183754305 C T HTR3D Intron 0.46 TCGA-EB-A41A-01 3 184008046 184008046 G A ECE2 Missense_Mutation p.E637K 0.41 tolerated(0.24) benign(0.212) TCGA-EB-A41A-01 3 184059406 184059406 C T FAM131A Intron 0.45 TCGA-EB-A41A-01 3 184090893 184090893 C T THPO Missense_Mutation p.R157Q 0.42 tolerated(0.31) possibly_damaging(0.551) TCGA-EB-A41A-01 3 184922264 184922264 G A EHHADH Missense_Mutation p.P284S 0.42 tolerated(0.09) benign(0.3) TCGA-EB-A41A-01 3 186006575 186006575 G A DGKG Silent p.S156S 0.32 TCGA-EB-A41A-01 3 186006576 186006576 G A DGKG Missense_Mutation p.S156F 0.31 deleterious(0.01) benign(0.27) TCGA-EB-A41A-01 3 186335000 186335000 T G AHSG Missense_Mutation p.V145G 0.46 deleterious(0) probably_damaging(0.923) TCGA-EB-A41A-01 3 186944261 186944261 C T MASP1 Missense_Mutation p.D497N 0.39 tolerated(0.28) benign(0.008) TCGA-EB-A41A-01 3 189028313 189028313 C T TPRG1 Silent p.F206F 0.37 TCGA-EB-A41A-01 3 189704595 189704595 C T LEPREL1 Silent p.G390G 0.32 TCGA-EB-A41A-01 3 193048957 193048957 C T ATP13A5 Silent p.Q472Q 0.22 TCGA-EB-A41A-01 3 193159356 193159356 C T ATP13A4 Missense_Mutation p.D780N 0.44 tolerated(0.56) benign(0.068) TCGA-EB-A41A-01 3 194118881 194118881 G A GP5 Missense_Mutation p.S44F 0.13 deleterious(0.01) benign(0.044) TCGA-EB-A41A-01 3 197402363 197402363 G A KIAA0226 Silent p.I890I 0.43 TCGA-EB-A41A-01 3 197665573 197665573 G A IQCG Missense_Mutation p.P121S 0.45 tolerated(0.31) benign(0.04) TCGA-EB-A41A-01 3 2613177 2613177 G A CNTN4 5'UTR 0.52 TCGA-EB-A41A-01 3 33686385 33686385 G A CLASP2 Silent p.F242F 0.47 TCGA-EB-A41A-01 3 36484872 36484872 G A STAC Missense_Mutation p.R43Q 0.42 deleterious(0) benign(0.232) TCGA-EB-A41A-01 3 36872902 36872902 C T TRANK1 Silent p.R2680R 0.48 TCGA-EB-A41A-01 3 36874255 36874255 G A TRANK1 Silent p.F2229F 0.32 TCGA-EB-A41A-01 3 36896919 36896919 G A TRANK1 Missense_Mutation p.H1388Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 3 36897258 36897258 C T TRANK1 Missense_Mutation p.V1275M 0.39 deleterious(0.05) possibly_damaging(0.863) TCGA-EB-A41A-01 3 36898081 36898081 C T TRANK1 Silent p.T1000T 0.37 TCGA-EB-A41A-01 3 38601809 38601809 C T SCN5A Silent p.G1358G 0.39 TCGA-EB-A41A-01 3 38760228 38760228 G A SCN10A Silent p.F1199F 0.42 TCGA-EB-A41A-01 3 38798174 38798174 C T SCN10A Silent p.K427K 0.43 TCGA-EB-A41A-01 3 38835232 38835232 C G SCN10A Silent p.R90R 0.41 TCGA-EB-A41A-01 3 3887340 3887340 C T LRRN1 Silent p.L339L 0.40 TCGA-EB-A41A-01 3 38888670 38888670 C T SCN11A Missense_Mutation p.E1631K 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A41A-01 3 38889189 38889189 G A SCN11A Missense_Mutation p.P1458S 0.30 tolerated(1) probably_damaging(1) TCGA-EB-A41A-01 3 38938428 38938428 C T SCN11A Missense_Mutation p.E771K 0.45 deleterious(0) probably_damaging(0.959) TCGA-EB-A41A-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.14 deleterious(0) probably_damaging(0.954) TCGA-EB-A41A-01 3 42448729 42448729 C T LYZL4 Silent p.V5V 0.29 TCGA-EB-A41A-01 3 42730445 42730445 C T KLHL40 Silent p.L502L 0.40 TCGA-EB-A41A-01 3 44893724 44893724 G A KIF15 Missense_Mutation p.V1333M 0.36 tolerated(0.08) benign(0.039) TCGA-EB-A41A-01 3 45127066 45127066 A G CDCP1 3'UTR 0.52 TCGA-EB-A41A-01 3 45518045 45518045 C T LARS2 Missense_Mutation p.S315L 0.37 tolerated(0.37) benign(0.004) TCGA-EB-A41A-01 3 46244820 46244820 G A CCR1 Missense_Mutation p.P329S 0.45 tolerated(0.06) probably_damaging(0.952) TCGA-EB-A41A-01 3 46245133 46245133 C T CCR1 Silent p.K224K 0.47 TCGA-EB-A41A-01 3 46415557 46415557 G A CCR5 3'UTR 0.44 TCGA-EB-A41A-01 3 46783974 46783974 C T PRSS45 Missense_Mutation p.G185S 0.41 tolerated(0.13) benign(0.221) TCGA-EB-A41A-01 3 4733026 4733026 G A ITPR1 Missense_Mutation p.E1328K 0.69 deleterious(0) probably_damaging(0.99) TCGA-EB-A41A-01 3 4842142 4842142 G A ITPR1 Nonsense_Mutation p.W2307* 0.40 TCGA-EB-A41A-01 3 4856811 4856811 G A ITPR1 Silent p.L2577L 0.36 TCGA-EB-A41A-01 3 4859884 4859884 C T ITPR1 Silent p.T2647T 0.28 TCGA-EB-A41A-01 3 48623783 48623783 G A COL7A1 Missense_Mutation p.R1178C 0.45 unknown(0) TCGA-EB-A41A-01 3 48697308 48697308 G A CELSR3 Silent p.D920D 0.44 TCGA-EB-A41A-01 3 49070620 49070620 C T QRICH1 Missense_Mutation p.E610K 0.51 deleterious(0.01) benign(0.257) TCGA-EB-A41A-01 3 49095047 49095047 G A QRICH1 Nonsense_Mutation p.Q196* 0.45 TCGA-EB-A41A-01 3 49294820 49294820 C T CCDC36 3'UTR 0.51 TCGA-EB-A41A-01 3 49693900 49693900 G A BSN Missense_Mutation p.G2304E 0.60 unknown(0) TCGA-EB-A41A-01 3 50293704 50293704 C T GNAI2 Missense_Mutation p.T182I 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 3 50332230 50332230 G A HYAL3 Silent p.F268F 0.45 TCGA-EB-A41A-01 3 50402813 50402813 G A CACNA2D2 Silent p.A1031A 0.50 TCGA-EB-A41A-01 3 51718487 51718487 C T TEX264 Missense_Mutation p.S106L 0.31 tolerated(0.06) possibly_damaging(0.837) TCGA-EB-A41A-01 3 51897323 51897323 C T IQCF2 Silent p.L144L 0.36 TCGA-EB-A41A-01 3 52453896 52453896 C T PHF7 Silent p.F78F 0.40 TCGA-EB-A41A-01 3 52469738 52469738 G C SEMA3G Missense_Mutation p.R744G 0.47 deleterious(0.01) benign(0.176) TCGA-EB-A41A-01 3 52557692 52557692 C T STAB1 Missense_Mutation p.R2439C 0.49 deleterious(0.04) benign(0.164) TCGA-EB-A41A-01 3 52821115 52821115 G A ITIH1 Missense_Mutation p.D630N 0.32 tolerated(0.12) benign(0.014) TCGA-EB-A41A-01 3 52831940 52831940 G A ITIH3 Silent p.G219G 0.38 TCGA-EB-A41A-01 3 53912384 53912384 C A ACTR8 Missense_Mutation p.Q135H 0.43 deleterious(0) probably_damaging(0.99) TCGA-EB-A41A-01 3 54933881 54933881 C T CACNA2D3 Missense_Mutation p.S812F 0.37 deleterious(0.01) possibly_damaging(0.877) TCGA-EB-A41A-01 3 56207477 56207477 C T ERC2 Missense_Mutation p.M382I 0.41 deleterious(0.02) benign(0.1) TCGA-EB-A41A-01 3 58124041 58124041 G A FLNB Missense_Mutation p.E1663K 0.44 tolerated(0.06) possibly_damaging(0.603) TCGA-EB-A41A-01 3 62177279 62177279 T A PTPRG Missense_Mutation p.N390K 0.38 deleterious(0.04) benign(0.155) TCGA-EB-A41A-01 3 62177280 62177280 G A PTPRG Missense_Mutation p.E391K 0.40 tolerated(0.06) possibly_damaging(0.477) TCGA-EB-A41A-01 3 67054151 67054151 C T KBTBD8 Missense_Mutation p.P254S 0.47 tolerated(0.13) probably_damaging(0.986) TCGA-EB-A41A-01 3 69053576 69053576 G A EOGT Silent p.I191I 0.46 TCGA-EB-A41A-01 3 70000994 70000994 A C MITF Missense_Mutation p.R298S 0.28 deleterious(0) possibly_damaging(0.885) TCGA-EB-A41A-01 3 74411080 74411080 G A CNTN3 Missense_Mutation p.S442F 0.34 tolerated(0.2) benign(0.015) TCGA-EB-A41A-01 3 77614213 77614213 G A ROBO2 Silent p.A613A 0.45 TCGA-EB-A41A-01 3 88040298 88040298 G A HTR1F Silent p.R133R 0.31 TCGA-EB-A41A-01 3 88199122 88199122 C T C3orf38 5'UTR 0.61 TCGA-EB-A41A-01 3 88205210 88205210 C T C3orf38 Missense_Mutation p.R139C 0.41 tolerated(0.11) benign(0.01) TCGA-EB-A41A-01 3 89391114 89391114 G A EPHA3 Missense_Mutation p.V394M 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41A-01 3 9066986 9066986 G A SRGAP3 Missense_Mutation p.S546F 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 3 98109795 98109795 G A OR5K3 Missense_Mutation p.E96K 0.37 deleterious(0.01) possibly_damaging(0.844) TCGA-EB-A41A-01 3 9825779 9825779 G A TADA3 Missense_Mutation p.R347C 0.38 deleterious(0) possibly_damaging(0.87) TCGA-EB-A41A-01 4 100349245 100349245 C T ADH7 Missense_Mutation p.D136N 0.42 tolerated(0.28) benign(0.046) TCGA-EB-A41A-01 4 100458902 100458902 C T C4orf17 Missense_Mutation p.S208L 0.41 tolerated(0.28) benign(0.002) TCGA-EB-A41A-01 4 100463338 100463338 G A C4orf17 3'UTR 0.41 TCGA-EB-A41A-01 4 10084769 10084769 G A WDR1 Missense_Mutation p.S358F 0.73 tolerated(0.61) possibly_damaging(0.516) TCGA-EB-A41A-01 4 102816508 102816508 A G BANK1 Missense_Mutation p.H317R 0.31 tolerated(0.44) benign(0.004) TCGA-EB-A41A-01 4 103189198 103189198 C T SLC39A8 Silent p.K293K 0.33 TCGA-EB-A41A-01 4 103723746 103723746 G A UBE2D3 Missense_Mutation p.P59L 0.54 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EB-A41A-01 4 103827792 103827792 G A SLC9B1 Nonsense_Mutation p.Q366* 0.50 TCGA-EB-A41A-01 4 104066992 104066992 T G CENPE Silent p.V1469V 0.42 TCGA-EB-A41A-01 4 104510988 104510988 C T TACR3 Missense_Mutation p.D417N 0.47 tolerated(0.06) benign(0.002) TCGA-EB-A41A-01 4 109681459 109681459 G A ETNPPL Silent p.P20P 0.50 TCGA-EB-A41A-01 4 110791660 110791660 C T LRIT3 Silent p.L585L 0.34 TCGA-EB-A41A-01 4 111397891 111397891 G A ENPEP Silent p.K107K 0.40 TCGA-EB-A41A-01 4 111398141 111398141 G A ENPEP Missense_Mutation p.E191K 0.45 tolerated(0.77) benign(0.007) TCGA-EB-A41A-01 4 113362506 113362506 C T ALPK1 3'UTR 0.38 TCGA-EB-A41A-01 4 114823575 114823575 C T ARSJ Missense_Mutation p.G552E 0.52 deleterious(0.03) probably_damaging(0.957) TCGA-EB-A41A-01 4 115544291 115544291 C T UGT8 Silent p.F85F 0.39 TCGA-EB-A41A-01 4 115997965 115997965 C T NDST4 Silent p.T76T 0.47 TCGA-EB-A41A-01 4 118975793 118975793 A G NDST3 Missense_Mutation p.N243S 0.47 tolerated(0.61) benign(0.089) TCGA-EB-A41A-01 4 123274980 123274980 C T KIAA1109 Missense_Mutation p.H4705Y 0.32 benign(0.133) TCGA-EB-A41A-01 4 126241294 126241294 G A FAT4 Missense_Mutation p.G1243E 0.45 probably_damaging(0.999) TCGA-EB-A41A-01 4 126373768 126373768 G A FAT4 Missense_Mutation p.C3866Y 0.31 probably_damaging(0.999) TCGA-EB-A41A-01 4 126411667 126411667 C T FAT4 Missense_Mutation p.P4564S 0.41 probably_damaging(0.998) TCGA-EB-A41A-01 4 126412548 126412548 G A FAT4 Silent p.R4857R 0.40 TCGA-EB-A41A-01 4 134073301 134073301 C T PCDH10 Missense_Mutation p.S669F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 4 138453002 138453002 C T PCDH18 Missense_Mutation p.E81K 0.11 tolerated(0.65) probably_damaging(0.95) TCGA-EB-A41A-01 4 144940465 144940465 A T GYPB 5'UTR 0.42 TCGA-EB-A41A-01 4 146823430 146823430 G A ZNF827 Silent p.V327V 0.39 TCGA-EB-A41A-01 4 151504439 151504439 C T MAB21L2 Silent p.F86F 0.43 TCGA-EB-A41A-01 4 156634363 156634363 C T GUCY1A3 Silent p.L400L 0.46 TCGA-EB-A41A-01 4 156864334 156864334 G A CTSO Missense_Mutation p.S73F 0.40 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 4 158256915 158256915 C T GRIA2 Silent p.I453I 0.34 TCGA-EB-A41A-01 4 162306804 162306804 G A FSTL5 3'UTR 0.62 TCGA-EB-A41A-01 4 16504379 16504379 C T LDB2 Missense_Mutation p.E337K 0.44 tolerated(0.15) benign(0.047) TCGA-EB-A41A-01 4 16504428 16504428 G A LDB2 Silent p.I320I 0.40 TCGA-EB-A41A-01 4 166986958 166986958 G A TLL1 Missense_Mutation p.E711K 0.42 tolerated(0.08) possibly_damaging(0.568) TCGA-EB-A41A-01 4 169105716 169105716 G A ANXA10 Missense_Mutation p.G264S 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A41A-01 4 169632828 169632828 C T PALLD Missense_Mutation p.S573F 0.25 tolerated(0.09) possibly_damaging(0.781) TCGA-EB-A41A-01 4 1732988 1732988 C T TACC3 Silent p.A517A 0.38 TCGA-EB-A41A-01 4 175898146 175898146 G A ADAM29 Silent p.R490R 0.41 TCGA-EB-A41A-01 4 175899014 175899014 C T ADAM29 Missense_Mutation p.P780S 0.44 tolerated(0.81) unknown(0) TCGA-EB-A41A-01 4 177114714 177114714 G A SPATA4 Silent p.L80L 0.49 TCGA-EB-A41A-01 4 17839312 17839312 C G NCAPG Missense_Mutation p.P785R 0.40 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 4 178897012 178897012 G A LINC01098 Missense_Mutation p.G72E 0.41 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-EB-A41A-01 4 1825473 1825473 G A LETM1 Silent p.I410I 0.42 TCGA-EB-A41A-01 4 183522154 183522154 C T TENM3 Missense_Mutation p.H197Y 0.39 tolerated_low_confidence(0.12) benign(0.415) TCGA-EB-A41A-01 4 183652188 183652188 G A TENM3 Missense_Mutation p.D955N 0.47 deleterious(0.03) possibly_damaging(0.811) TCGA-EB-A41A-01 4 185074732 185074732 C T ENPP6 Silent p.R132R 0.45 TCGA-EB-A41A-01 4 185074738 185074738 G A ENPP6 Silent p.A130A 0.43 TCGA-EB-A41A-01 4 186083918 186083918 G A KIAA1430 3'UTR 0.64 TCGA-EB-A41A-01 4 187179265 187179265 G A KLKB1 Missense_Mutation p.E606K 0.51 tolerated(0.12) benign(0.374) TCGA-EB-A41A-01 4 20525502 20525502 C T SLIT2 Missense_Mutation p.S417L 0.44 tolerated(0.11) benign(0.121) TCGA-EB-A41A-01 4 20526788 20526788 C T SLIT2 Silent p.F485F 0.34 TCGA-EB-A41A-01 4 20619271 20619271 G A SLIT2 Missense_Mutation p.R1449Q 0.40 tolerated(1) benign(0.049) TCGA-EB-A41A-01 4 22749125 22749125 G A GBA3 Missense_Mutation p.E165K 0.39 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 4 22749181 22749181 C T GBA3 Silent p.I183I 0.39 TCGA-EB-A41A-01 4 22820411 22820411 G A GBA3 Nonsense_Mutation p.W425* 0.44 TCGA-EB-A41A-01 4 23815563 23815563 C T PPARGC1A Missense_Mutation p.E515K 0.40 tolerated(0.1) probably_damaging(0.939) TCGA-EB-A41A-01 4 25419792 25419792 C T ANAPC4 Missense_Mutation p.R739C 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 4 25821553 25821553 G A SEL1L3 Missense_Mutation p.P434S 0.56 deleterious(0.01) possibly_damaging(0.611) TCGA-EB-A41A-01 4 3230735 3230735 C T HTT Missense_Mutation p.S2703F 0.38 benign(0.013) TCGA-EB-A41A-01 4 3449301 3449301 G A HGFAC Missense_Mutation p.E480K 0.38 deleterious(0.01) possibly_damaging(0.797) TCGA-EB-A41A-01 4 36160998 36160998 C T ARAP2 Missense_Mutation p.G858R 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-EB-A41A-01 4 38798695 38798695 G A TLR1 Silent p.I586I 0.39 TCGA-EB-A41A-01 4 38828899 38828899 G A TLR6 Silent p.I732I 0.46 TCGA-EB-A41A-01 4 39217564 39217564 T G WDR19 Missense_Mutation p.D355E 0.40 tolerated(0.26) benign(0.127) TCGA-EB-A41A-01 4 39450282 39450282 G A KLB Silent p.K1037K 0.34 TCGA-EB-A41A-01 4 40440224 40440224 G A RBM47 Silent p.D229D 0.38 TCGA-EB-A41A-01 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.37 TCGA-EB-A41A-01 4 42895386 42895386 G A GRXCR1 Missense_Mutation p.D35N 0.44 deleterious(0) probably_damaging(0.982) TCGA-EB-A41A-01 4 4419179 4419179 C T NSG1 3'UTR 0.42 TCGA-EB-A41A-01 4 46042977 46042977 C T GABRG1 3'UTR 0.44 TCGA-EB-A41A-01 4 46252553 46252553 C T GABRA2 Silent p.P376P 0.42 TCGA-EB-A41A-01 4 47655644 47655644 C T CORIN Missense_Mutation p.G590E 0.43 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 4 47746427 47746427 C T CORIN Missense_Mutation p.G264E 0.38 tolerated(0.28) benign(0.162) TCGA-EB-A41A-01 4 48529989 48529989 G A FRYL Missense_Mutation p.S2380L 0.43 deleterious(0) probably_damaging(0.992) TCGA-EB-A41A-01 4 5016889 5016889 G A CYTL1 Missense_Mutation p.R134C 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.701) TCGA-EB-A41A-01 4 54344824 54344824 C T LNX1 Missense_Mutation p.G524E 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 4 55962423 55962423 G A KDR Missense_Mutation p.L901F 0.45 deleterious(0) probably_damaging(0.99) TCGA-EB-A41A-01 4 55962427 55962427 G A KDR Silent p.V899V 0.42 TCGA-EB-A41A-01 4 5624436 5624436 G A EVC2 Silent p.L777L 0.41 TCGA-EB-A41A-01 4 65175550 65175550 C T TECRL Silent p.L217L 0.39 TCGA-EB-A41A-01 4 6588737 6588737 C T MAN2B2 Missense_Mutation p.L136F 0.40 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 4 66197696 66197696 G A EPHA5 Silent p.T1001T 0.38 TCGA-EB-A41A-01 4 66230878 66230878 C T EPHA5 Missense_Mutation p.G698E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 4 67142633 67142633 C T MIR1269A RNA 0.55 TCGA-EB-A41A-01 4 68409894 68409894 T A CENPC Missense_Mutation p.Y13F 0.18 deleterious(0) possibly_damaging(0.82) TCGA-EB-A41A-01 4 68693236 68693236 T C TMPRSS11D Missense_Mutation p.N232S 0.43 tolerated(0.19) benign(0.011) TCGA-EB-A41A-01 4 69101961 69101961 C T TMPRSS11B Missense_Mutation p.D50N 0.32 tolerated(0.21) benign(0.012) TCGA-EB-A41A-01 4 69817335 69817335 C T UGT2A3 Silent p.V48V 0.32 TCGA-EB-A41A-01 4 69817454 69817454 C T UGT2A3 Missense_Mutation p.V9I 0.38 tolerated(0.14) benign(0.101) TCGA-EB-A41A-01 4 69962910 69962910 C T UGT2B7 Silent p.F224F 0.44 TCGA-EB-A41A-01 4 70160558 70160558 G A UGT2B28 3'UTR 0.43 TCGA-EB-A41A-01 4 70361469 70361469 C T UGT2B4 Missense_Mutation p.M37I 0.44 tolerated(0.94) benign(0.006) TCGA-EB-A41A-01 4 70709896 70709896 G A SULT1E1 Missense_Mutation p.S252L 0.41 deleterious(0) probably_damaging(0.927) TCGA-EB-A41A-01 4 71275235 71275235 C T PROL1 Missense_Mutation p.P64S 0.47 tolerated_low_confidence(0.91) possibly_damaging(0.803) TCGA-EB-A41A-01 4 71396861 71396861 G A AMTN Missense_Mutation p.A155T 0.47 tolerated(0.27) probably_damaging(0.998) TCGA-EB-A41A-01 4 71532202 71532202 C T IGJ Silent p.K2K 0.26 TCGA-EB-A41A-01 4 72897833 72897833 G A NPFFR2 Nonsense_Mutation p.W72* 0.40 TCGA-EB-A41A-01 4 73161499 73161499 G A ADAMTS3 Silent p.F865F 0.51 TCGA-EB-A41A-01 4 74459210 74459210 G A RASSF6 Missense_Mutation p.S114F 0.49 deleterious(0) benign(0.043) TCGA-EB-A41A-01 4 74863996 74863996 C T CXCL5 Missense_Mutation p.G57R 0.51 tolerated(0.22) benign(0.032) TCGA-EB-A41A-01 4 76523288 76523288 A G CDKL2 Silent p.V331V 0.38 TCGA-EB-A41A-01 4 76711919 76711919 C T USO1 Silent p.I405I 0.34 TCGA-EB-A41A-01 4 76794427 76794427 C T PPEF2 Silent p.E453E 0.40 TCGA-EB-A41A-01 4 76805850 76805850 C T PPEF2 Missense_Mutation p.D215N 0.45 tolerated(1) possibly_damaging(0.529) TCGA-EB-A41A-01 4 77018808 77018808 G A ART3 Missense_Mutation p.E265K 0.33 tolerated(0.15) benign(0.217) TCGA-EB-A41A-01 4 77084453 77084453 G A SCARB2 Silent p.I441I 0.60 TCGA-EB-A41A-01 4 77288491 77288491 C T CCDC158 Missense_Mutation p.E596K 0.43 tolerated(0.84) probably_damaging(0.979) TCGA-EB-A41A-01 4 77288886 77288886 G A CCDC158 Missense_Mutation p.S464F 0.55 deleterious(0) probably_damaging(0.992) TCGA-EB-A41A-01 4 77661510 77661510 G A SHROOM3 Silent p.R728R 0.43 TCGA-EB-A41A-01 4 77663034 77663034 C T SHROOM3 Silent p.V1236V 0.68 TCGA-EB-A41A-01 4 79440614 79440614 G T FRAS1 Missense_Mutation p.D3507Y 0.40 probably_damaging(0.976) TCGA-EB-A41A-01 4 81967791 81967791 C T BMP3 Missense_Mutation p.P406S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 4 8584282 8584282 G A GPR78 Silent p.Q231Q 0.51 TCGA-EB-A41A-01 4 85974 85974 T A Z95704.2 RNA 0.19 TCGA-EB-A41A-01 4 87694022 87694022 C T PTPN13 Missense_Mutation p.H1759Y 0.41 tolerated(1) benign(0.002) TCGA-EB-A41A-01 4 87749214 87749214 G A SLC10A6 Silent p.F231F 0.52 TCGA-EB-A41A-01 4 88584229 88584229 C T DMP1 Silent p.L433L 0.40 TCGA-EB-A41A-01 4 90874310 90874310 G A MMRN1 Missense_Mutation p.G1143E 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 4 95494522 95494522 C T PDLIM5 Missense_Mutation p.P90L 0.43 deleterious(0.04) benign(0.141) TCGA-EB-A41A-01 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.39 tolerated(0.54) benign(0.001) TCGA-EB-A41A-01 4 983005 983005 C T SLC26A1 Silent p.K574K 0.45 TCGA-EB-A41A-01 5 101572487 101572487 C T SLCO4C1 3'UTR 0.43 TCGA-EB-A41A-01 5 101592900 101592900 A G SLCO4C1 Missense_Mutation p.V463A 0.44 tolerated(0.23) benign(0.05) TCGA-EB-A41A-01 5 10973428 10973428 C T CTNND2 3'UTR 0.70 TCGA-EB-A41A-01 5 10973664 10973664 G A CTNND2 Silent p.S1193S 0.32 TCGA-EB-A41A-01 5 111615997 111615997 G A EPB41L4A Silent p.T76T 0.11 TCGA-EB-A41A-01 5 114462246 114462246 T C TRIM36 Missense_Mutation p.E714G 0.59 deleterious(0) probably_damaging(0.932) TCGA-EB-A41A-01 5 118560418 118560418 C T DMXL1 Silent p.A2743A 0.30 TCGA-EB-A41A-01 5 118860982 118860982 T G HSD17B4 Splice_Site p.X550_splice 0.38 TCGA-EB-A41A-01 5 121786416 121786416 G A SNCAIP Missense_Mutation p.G625E 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 121799288 121799288 C T SNCAIP 3'UTR 0.50 TCGA-EB-A41A-01 5 122337743 122337743 C T SNX24 Intron 0.42 TCGA-EB-A41A-01 5 122364492 122364492 G A PPIC Silent p.I101I 0.40 TCGA-EB-A41A-01 5 125820208 125820208 C T GRAMD3 Missense_Mutation p.P336L 0.41 tolerated(0.16) benign(0.039) TCGA-EB-A41A-01 5 128302151 128302151 G A SLC27A6 Silent p.T107T 0.43 TCGA-EB-A41A-01 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.32 TCGA-EB-A41A-01 5 128844930 128844930 T A ADAMTS19 Missense_Mutation p.I297N 0.37 tolerated(0.07) benign(0.434) TCGA-EB-A41A-01 5 131657895 131657895 A T SLC22A4 Missense_Mutation p.K224M 0.40 deleterious(0.03) probably_damaging(0.926) TCGA-EB-A41A-01 5 133451705 133451705 C T TCF7 Missense_Mutation p.P141L 0.30 tolerated(1) probably_damaging(0.991) TCGA-EB-A41A-01 5 133451706 133451706 C T TCF7 Silent p.P141P 0.30 TCGA-EB-A41A-01 5 134782703 134782703 C T C5orf20 Silent p.G32G 0.35 TCGA-EB-A41A-01 5 134785116 134785116 T C TIFAB 3'UTR 0.19 TCGA-EB-A41A-01 5 135692461 135692461 C T TRPC7 Silent p.E205E 0.44 TCGA-EB-A41A-01 5 135692590 135692590 G A TRPC7 Silent p.S162S 0.40 TCGA-EB-A41A-01 5 13716727 13716727 C T DNAH5 Missense_Mutation p.D4260N 0.54 possibly_damaging(0.822) TCGA-EB-A41A-01 5 137486537 137486537 G A BRD8 Missense_Mutation p.P1006L 0.40 tolerated_low_confidence(0.15) benign(0) TCGA-EB-A41A-01 5 13753350 13753350 C T DNAH5 Missense_Mutation p.E3622K 0.32 possibly_damaging(0.621) TCGA-EB-A41A-01 5 13769122 13769122 C T DNAH5 Missense_Mutation p.E3282K 0.39 possibly_damaging(0.621) TCGA-EB-A41A-01 5 13780963 13780963 C A DNAH5 Missense_Mutation p.V2976F 0.39 benign(0.004) TCGA-EB-A41A-01 5 13865994 13865994 G A DNAH5 Missense_Mutation p.R1380W 0.33 possibly_damaging(0.689) TCGA-EB-A41A-01 5 13876838 13876838 T A DNAH5 Silent p.V1117V 0.38 TCGA-EB-A41A-01 5 13931251 13931251 C T DNAH5 Missense_Mutation p.E54K 0.40 benign(0.418) TCGA-EB-A41A-01 5 139741747 139741747 C T SLC4A9 Missense_Mutation p.S260F 0.60 deleterious(0) benign(0.195) TCGA-EB-A41A-01 5 140057276 140057276 G A HARS Silent p.F231F 0.40 TCGA-EB-A41A-01 5 140167159 140167159 G A PCDHA1 Silent p.R428R 0.34 TCGA-EB-A41A-01 5 140174460 140174460 G A PCDHA2 5'Flank 0.50 TCGA-EB-A41A-01 5 140221502 140221502 C T PCDHA8 Missense_Mutation p.S199F 0.43 tolerated_low_confidence(0.7) benign(0.012) TCGA-EB-A41A-01 5 140221951 140221951 G A PCDHA8 Missense_Mutation p.E349K 0.40 deleterious_low_confidence(0.05) benign(0.018) TCGA-EB-A41A-01 5 140227909 140227909 C T PCDHA9 5'UTR 0.49 TCGA-EB-A41A-01 5 140227938 140227938 C T PCDHA9 5'UTR 0.49 TCGA-EB-A41A-01 5 140227939 140227939 C T PCDHA9 5'UTR 0.49 TCGA-EB-A41A-01 5 140263078 140263078 C T PCDHA13 Silent p.L409L 0.14 TCGA-EB-A41A-01 5 140347704 140347704 C T PCDHAC2 Silent p.S451S 0.41 TCGA-EB-A41A-01 5 140347758 140347758 C T PCDHAC2 Silent p.F469F 0.37 TCGA-EB-A41A-01 5 140347943 140347943 T A PCDHAC2 Missense_Mutation p.L531H 0.35 deleterious(0) probably_damaging(0.928) TCGA-EB-A41A-01 5 140476783 140476783 G A PCDHB2 3'UTR 0.38 TCGA-EB-A41A-01 5 140501728 140501728 G A PCDHB4 Missense_Mutation p.D50N 0.37 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-EB-A41A-01 5 140502463 140502463 G A PCDHB4 Missense_Mutation p.E295K 0.47 tolerated(0.12) benign(0.026) TCGA-EB-A41A-01 5 140515291 140515291 G A PCDHB5 Missense_Mutation p.R92Q 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.846) TCGA-EB-A41A-01 5 140515899 140515899 G A PCDHB5 Missense_Mutation p.E295K 0.40 tolerated_low_confidence(0.12) benign(0.001) TCGA-EB-A41A-01 5 140554039 140554039 G A PCDHB7 Silent p.L541L 0.41 TCGA-EB-A41A-01 5 140554809 140554809 A T PCDHB7 3'UTR 0.15 TCGA-EB-A41A-01 5 140558834 140558834 G A PCDHB8 Missense_Mutation p.E407K 0.24 tolerated_low_confidence(0.08) benign(0.011) TCGA-EB-A41A-01 5 140580853 140580853 C T PCDHB11 Silent p.S502S 0.37 TCGA-EB-A41A-01 5 140595237 140595237 C T PCDHB13 Silent p.F514F 0.39 TCGA-EB-A41A-01 5 140595361 140595361 G A PCDHB13 Missense_Mutation p.D556N 0.35 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-EB-A41A-01 5 140604092 140604092 G A PCDHB14 Missense_Mutation p.D339N 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A41A-01 5 140615971 140615971 C T PCDHB18 RNA 0.43 TCGA-EB-A41A-01 5 140626644 140626644 C T PCDHB15 Missense_Mutation p.L500F 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.5) TCGA-EB-A41A-01 5 140682711 140682711 G A SLC25A2 Missense_Mutation p.S241F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 5 140683056 140683056 G A SLC25A2 Missense_Mutation p.P126L 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 140718799 140718799 G A PCDHGA2 Silent p.A87A 0.38 TCGA-EB-A41A-01 5 140723999 140723999 C T PCDHGA3 Silent p.F133F 0.45 TCGA-EB-A41A-01 5 140729876 140729876 C T PCDHGB1 Missense_Mutation p.P17S 0.50 tolerated(0.5) benign(0.021) TCGA-EB-A41A-01 5 140745415 140745415 C T PCDHGA5 Silent p.S506S 0.46 TCGA-EB-A41A-01 5 140788100 140788100 G A PCDHGB6 Missense_Mutation p.E111K 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A41A-01 5 140798393 140798393 G A PCDHGB7 Missense_Mutation p.D323N 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 140801482 140801482 C T PCDHGA11 Missense_Mutation p.R230C 0.41 deleterious_low_confidence(0.03) benign(0.042) TCGA-EB-A41A-01 5 140855818 140855818 C A PCDHGC3 Missense_Mutation p.F45L 0.41 deleterious(0.01) benign(0.174) TCGA-EB-A41A-01 5 140953192 140953192 G A DIAPH1 Missense_Mutation p.P742L 0.39 unknown(0) TCGA-EB-A41A-01 5 141325150 141325150 C T PCDH12 Silent p.L1117L 0.33 TCGA-EB-A41A-01 5 14364806 14364806 C T TRIO Nonsense_Mutation p.Q879* 0.36 TCGA-EB-A41A-01 5 14465771 14465771 C T TRIO Intron 0.51 TCGA-EB-A41A-01 5 145379709 145379709 G A SH3RF2 Missense_Mutation p.R156K 0.26 deleterious(0.01) benign(0.232) TCGA-EB-A41A-01 5 145522608 145522608 G A LARS Silent p.F639F 0.36 TCGA-EB-A41A-01 5 148384386 148384386 G A SH3TC2 Missense_Mutation p.T1252I 0.37 tolerated(0.2) benign(0.003) TCGA-EB-A41A-01 5 149314161 149314161 C T PDE6A Missense_Mutation p.D199N 0.41 tolerated(0.97) benign(0.005) TCGA-EB-A41A-01 5 149754576 149754576 C T TCOF1 Silent p.S446S 0.31 TCGA-EB-A41A-01 5 150110993 150110993 G A DCTN4 Missense_Mutation p.T206I 0.40 tolerated(0.16) benign(0.004) TCGA-EB-A41A-01 5 150901481 150901481 C T FAT2 Missense_Mutation p.R3558Q 0.38 benign(0.009) TCGA-EB-A41A-01 5 151234635 151234635 C T GLRA1 Silent p.K221K 0.47 TCGA-EB-A41A-01 5 151784185 151784185 G A NMUR2 Missense_Mutation p.L164F 0.41 deleterious(0.03) probably_damaging(0.992) TCGA-EB-A41A-01 5 151784755 151784755 G A NMUR2 5'UTR 0.64 TCGA-EB-A41A-01 5 153190586 153190586 G A GRIA1 Missense_Mutation p.G851D 0.35 tolerated_low_confidence(0.13) benign(0.115) TCGA-EB-A41A-01 5 156907966 156907966 C T ADAM19 Silent p.S916S 0.29 TCGA-EB-A41A-01 5 15937001 15937001 G A FBXL7 Silent p.V394V 0.42 TCGA-EB-A41A-01 5 159840983 159840983 A G SLU7 Missense_Mutation p.S110P 0.48 tolerated(0.88) benign(0.001) TCGA-EB-A41A-01 5 159992876 159992876 C T ATP10B Missense_Mutation p.G1324R 0.37 tolerated(0.25) benign(0.027) TCGA-EB-A41A-01 5 160059207 160059207 C T ATP10B Missense_Mutation p.G517S 0.43 tolerated(0.41) benign(0.084) TCGA-EB-A41A-01 5 161116303 161116303 C T GABRA6 Missense_Mutation p.P164S 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 161580431 161580431 C T GABRG2 3'UTR 0.43 TCGA-EB-A41A-01 5 168151478 168151478 C T SLIT3 Missense_Mutation p.G761E 0.51 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A41A-01 5 168180103 168180103 C T SLIT3 Silent p.L610L 0.35 TCGA-EB-A41A-01 5 168201266 168201266 G A SLIT3 Silent p.F423F 0.35 TCGA-EB-A41A-01 5 168250332 168250332 G A SLIT3 Missense_Mutation p.L188F 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 169535629 169535629 C T FOXI1 3'UTR 0.47 TCGA-EB-A41A-01 5 170723000 170723000 C T RANBP17 Missense_Mutation p.S1051F 0.51 tolerated(0.37) benign(0.049) TCGA-EB-A41A-01 5 175110764 175110764 C T HRH2 Silent p.V176V 0.49 TCGA-EB-A41A-01 5 176002100 176002100 G A CDHR2 Missense_Mutation p.G171R 0.43 tolerated(0.51) benign(0.067) TCGA-EB-A41A-01 5 176002428 176002428 G A CDHR2 Splice_Site p.X256_splice 0.34 TCGA-EB-A41A-01 5 176003139 176003139 C T CDHR2 Missense_Mutation p.R383C 0.35 deleterious(0) possibly_damaging(0.901) TCGA-EB-A41A-01 5 176517766 176517766 G A FGFR4 Missense_Mutation p.D126N 0.33 deleterious(0.04) benign(0.009) TCGA-EB-A41A-01 5 178311167 178311167 C T ZNF354B Missense_Mutation p.H572Y 0.33 deleterious(0) probably_damaging(0.98) TCGA-EB-A41A-01 5 178392598 178392598 C T ZNF454 Missense_Mutation p.S398F 0.39 tolerated(0.27) probably_damaging(0.982) TCGA-EB-A41A-01 5 179193523 179193523 T A MAML1 Missense_Mutation p.N504K 0.35 tolerated(0.15) benign(0.044) TCGA-EB-A41A-01 5 179407171 179407171 G A RNF130 Silent p.A241A 0.40 TCGA-EB-A41A-01 5 1879826 1879826 G A IRX4 Silent p.I176I 0.33 TCGA-EB-A41A-01 5 23509642 23509642 G A PRDM9 Missense_Mutation p.D45N 0.46 deleterious_low_confidence(0) benign(0.066) TCGA-EB-A41A-01 5 23527595 23527595 G A PRDM9 Missense_Mutation p.G800R 0.45 deleterious(0) unknown(0) TCGA-EB-A41A-01 5 24487744 24487744 C T CDH10 3'UTR 0.44 TCGA-EB-A41A-01 5 32235106 32235106 A C MTMR12 Missense_Mutation p.F492V 0.44 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 5 32783059 32783059 C T NPR3 Missense_Mutation p.P451S 0.30 tolerated(0.1) benign(0.089) TCGA-EB-A41A-01 5 33457490 33457490 T C TARS Silent p.D355D 0.39 TCGA-EB-A41A-01 5 33457491 33457491 C T TARS Missense_Mutation p.H356Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 5 35774065 35774065 G A SPEF2 Silent p.R1340R 0.38 TCGA-EB-A41A-01 5 35779418 35779418 C T SPEF2 Nonsense_Mutation p.R1473* 0.15 TCGA-EB-A41A-01 5 35856996 35856996 C T IL7R 5'UTR 0.43 TCGA-EB-A41A-01 5 35876527 35876527 C T IL7R Missense_Mutation p.S440F 0.56 tolerated(0.71) benign(0.045) TCGA-EB-A41A-01 5 35954336 35954336 G A UGT3A1 Silent p.L514L 0.38 TCGA-EB-A41A-01 5 38903986 38903986 T G OSMR Missense_Mutation p.Y332D 0.39 deleterious(0.02) benign(0.001) TCGA-EB-A41A-01 5 40958182 40958182 G A C7 Silent p.V436V 0.30 TCGA-EB-A41A-01 5 40964861 40964861 C T C7 Missense_Mutation p.P590S 0.38 tolerated(0.15) probably_damaging(0.968) TCGA-EB-A41A-01 5 40998130 40998130 G A MROH2B 3'UTR 0.58 TCGA-EB-A41A-01 5 41382512 41382512 C T PLCXD3 Nonsense_Mutation p.W76* 0.38 TCGA-EB-A41A-01 5 476139 476139 C T SLC9A3 Silent p.E712E 0.50 TCGA-EB-A41A-01 5 49701568 49701568 C T EMB Silent p.G197G 0.41 TCGA-EB-A41A-01 5 53409087 53409087 G A ARL15 Missense_Mutation p.P136L 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 5 54403740 54403740 G A GZMA Missense_Mutation p.E112K 0.43 tolerated(0.1) benign(0.171) TCGA-EB-A41A-01 5 54424406 54424406 G A CDC20B Missense_Mutation p.A246V 0.38 deleterious(0.03) possibly_damaging(0.692) TCGA-EB-A41A-01 5 57790312 57790312 T A GAPT 5'UTR 0.56 TCGA-EB-A41A-01 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.43 TCGA-EB-A41A-01 5 65288542 65288543 - A ERBB2IP 5'UTR p.M1? 0.30 TCGA-EB-A41A-01 5 70948563 70948563 C T MCCC2 Missense_Mutation p.P519L 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EB-A41A-01 5 72373276 72373276 C T FCHO2 Silent p.I601I 0.42 TCGA-EB-A41A-01 5 75927723 75927723 G A IQGAP2 Missense_Mutation p.G551E 0.39 tolerated(1) benign(0) TCGA-EB-A41A-01 5 75960977 75960977 C T IQGAP2 Nonsense_Mutation p.Q886* 0.36 TCGA-EB-A41A-01 5 76173582 76173582 C T S100Z Silent p.F75F 0.35 TCGA-EB-A41A-01 5 76932975 76932975 C T OTP Missense_Mutation p.G40S 0.62 tolerated_low_confidence(0.15) benign(0.036) TCGA-EB-A41A-01 5 7709439 7709439 C T ADCY2 Missense_Mutation p.P506L 0.32 deleterious(0) probably_damaging(0.982) TCGA-EB-A41A-01 5 78423706 78423706 G A BHMT Missense_Mutation p.E313K 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A41A-01 5 79025527 79025527 C T CMYA5 Silent p.S313S 0.37 TCGA-EB-A41A-01 5 79026456 79026456 C T CMYA5 Missense_Mutation p.A623V 0.40 benign(0.054) TCGA-EB-A41A-01 5 79026818 79026818 C T CMYA5 Missense_Mutation p.P744S 0.53 benign(0.337) TCGA-EB-A41A-01 5 79030152 79030152 C T CMYA5 Missense_Mutation p.S1855L 0.42 benign(0.001) TCGA-EB-A41A-01 5 79031486 79031486 G A CMYA5 Missense_Mutation p.E2300K 0.38 probably_damaging(0.956) TCGA-EB-A41A-01 5 82815665 82815665 C T VCAN Missense_Mutation p.P514S 0.46 tolerated(1) benign(0.001) TCGA-EB-A41A-01 5 82816274 82816274 G A VCAN Missense_Mutation p.E717K 0.33 tolerated(0.17) benign(0.025) TCGA-EB-A41A-01 5 89949127 89949127 C T GPR98 Missense_Mutation p.P1246S 0.47 benign(0) TCGA-EB-A41A-01 5 90041520 90041520 C T GPR98 Missense_Mutation p.P3628S 0.38 probably_damaging(0.968) TCGA-EB-A41A-01 5 90055394 90055394 G A GPR98 Missense_Mutation p.E4037K 0.32 probably_damaging(0.973) TCGA-EB-A41A-01 5 9119232 9119232 C T SEMA5A Nonsense_Mutation p.W601* 0.28 TCGA-EB-A41A-01 5 9224869 9224869 G A SEMA5A Missense_Mutation p.P188L 0.34 deleterious(0.01) probably_damaging(0.942) TCGA-EB-A41A-01 6 100368857 100368857 C T MCHR2 Missense_Mutation p.E328K 0.48 tolerated(0.34) benign(0.002) TCGA-EB-A41A-01 6 100368858 100368858 C T MCHR2 Silent p.K327K 0.47 TCGA-EB-A41A-01 6 107019922 107019922 C T RTN4IP1 Silent p.L380L 0.47 TCGA-EB-A41A-01 6 108041967 108041967 G A SCML4 Silent p.L305L 0.43 TCGA-EB-A41A-01 6 108070977 108070977 G A SCML4 Missense_Mutation p.P66L 0.32 deleterious(0.04) possibly_damaging(0.814) TCGA-EB-A41A-01 6 108232564 108232564 G A SEC63 Missense_Mutation p.L204F 0.35 deleterious(0.02) possibly_damaging(0.729) TCGA-EB-A41A-01 6 109225533 109225533 C T ARMC2 Silent p.L316L 0.38 TCGA-EB-A41A-01 6 10942960 10942960 G A SYCP2L Silent p.L645L 0.27 TCGA-EB-A41A-01 6 109816585 109816585 G A AK9 Missense_Mutation p.P1792S 0.57 deleterious(0.05) benign(0.063) TCGA-EB-A41A-01 6 110086255 110086255 C T FIG4 Missense_Mutation p.R492C 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 6 110943347 110943347 G A CDK19 Missense_Mutation p.P352S 0.45 tolerated(0.06) benign(0.403) TCGA-EB-A41A-01 6 117198958 117198958 G A RFX6 Splice_Site p.X75_splice 0.47 TCGA-EB-A41A-01 6 117248363 117248363 C T RFX6 Missense_Mutation p.P687S 0.44 tolerated_low_confidence(0.14) benign(0.003) TCGA-EB-A41A-01 6 117248364 117248364 C T RFX6 Missense_Mutation p.P687L 0.40 tolerated_low_confidence(0.07) benign(0.06) TCGA-EB-A41A-01 6 117663617 117663617 G A ROS1 Missense_Mutation p.P1539S 0.44 tolerated(0.83) benign(0.004) TCGA-EB-A41A-01 6 117706913 117706913 G A ROS1 Missense_Mutation p.A746V 0.38 tolerated(0.3) benign(0.01) TCGA-EB-A41A-01 6 119300560 119300560 C T FAM184A Missense_Mutation p.E809K 0.56 deleterious(0.02) possibly_damaging(0.674) TCGA-EB-A41A-01 6 119569512 119569512 C T MAN1A1 Missense_Mutation p.R302Q 0.25 deleterious(0.01) possibly_damaging(0.877) TCGA-EB-A41A-01 6 12120155 12120155 G T HIVEP1 Nonsense_Mutation p.E43* 0.28 TCGA-EB-A41A-01 6 121412104 121412104 G A TBC1D32 Silent p.F1183F 0.45 TCGA-EB-A41A-01 6 125232150 125232150 A T RP11-510H23.1 RNA 0.26 TCGA-EB-A41A-01 6 127912702 127912702 G A C6orf58 Missense_Mutation p.E310K 0.28 tolerated_low_confidence(0.41) benign(0.117) TCGA-EB-A41A-01 6 129618869 129618869 C T LAMA2 Missense_Mutation p.P966S 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A41A-01 6 129637084 129637084 G A LAMA2 Missense_Mutation p.E1305K 0.33 tolerated(0.12) possibly_damaging(0.79) TCGA-EB-A41A-01 6 130762051 130762051 G A TMEM200A Missense_Mutation p.D162N 0.34 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 6 130762175 130762175 C T TMEM200A Missense_Mutation p.S203L 0.38 deleterious(0.02) benign(0.122) TCGA-EB-A41A-01 6 136475314 136475314 G A PDE7B Splice_Site p.X193_splice 0.30 TCGA-EB-A41A-01 6 136494986 136494986 C T PDE7B Nonsense_Mutation p.R255* 0.42 TCGA-EB-A41A-01 6 136582427 136582427 C T BCLAF1 Silent p.K911K 0.13 TCGA-EB-A41A-01 6 137245937 137245937 G A SLC35D3 3'UTR 0.64 TCGA-EB-A41A-01 6 137323255 137323255 C T IL20RA Missense_Mutation p.E368K 0.32 tolerated(0.09) benign(0.03) TCGA-EB-A41A-01 6 139175272 139175272 C T ECT2L Silent p.F393F 0.49 TCGA-EB-A41A-01 6 139488168 139488168 C T HECA Missense_Mutation p.P340L 0.37 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-EB-A41A-01 6 139488169 139488169 C T HECA Silent p.P340P 0.37 TCGA-EB-A41A-01 6 139563879 139563879 C T TXLNB Silent p.Q613Q 0.43 TCGA-EB-A41A-01 6 139564370 139564370 C A TXLNB Nonsense_Mutation p.E450* 0.54 TCGA-EB-A41A-01 6 144806570 144806570 C A UTRN Missense_Mutation p.T1246N 0.43 tolerated(0.93) benign(0.005) TCGA-EB-A41A-01 6 145161881 145161881 G A UTRN Missense_Mutation p.E3395K 0.54 deleterious_low_confidence(0.02) benign(0.15) TCGA-EB-A41A-01 6 146256071 146256071 G A SHPRH Missense_Mutation p.R988C 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 6 150267602 150267602 C T ULBP2 Silent p.F148F 0.43 TCGA-EB-A41A-01 6 152651872 152651872 G A SYNE1 Nonsense_Mutation p.R4650* 0.45 TCGA-EB-A41A-01 6 152711527 152711527 C T SYNE1 Missense_Mutation p.E2689K 0.48 possibly_damaging(0.493) TCGA-EB-A41A-01 6 152771804 152771804 C T SYNE1 Silent p.R1117R 0.18 TCGA-EB-A41A-01 6 154567818 154567818 C T IPCEF1 Silent p.K51K 0.40 TCGA-EB-A41A-01 6 155469249 155469249 C T TIAM2 Silent p.T603T 0.40 TCGA-EB-A41A-01 6 155761178 155761178 A G NOX3 Missense_Mutation p.F194L 0.50 tolerated(0.41) benign(0.003) TCGA-EB-A41A-01 6 157522451 157522451 C T ARID1B Silent p.L1575L 0.43 TCGA-EB-A41A-01 6 158487540 158487540 C T SYNJ2 Silent p.I530I 0.50 TCGA-EB-A41A-01 6 158514004 158514004 A G SYNJ2 Silent p.E1204E 0.37 TCGA-EB-A41A-01 6 158569980 158569980 G A SERAC1 Missense_Mutation p.A91V 0.40 tolerated(0.69) benign(0) TCGA-EB-A41A-01 6 160998276 160998276 C T LPA Missense_Mutation p.R1508Q 0.43 tolerated(0.34) benign(0.005) TCGA-EB-A41A-01 6 161020604 161020604 C T LPA Missense_Mutation p.G1072E 0.34 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 6 165827045 165827045 C T PDE10A Missense_Mutation p.E408K 0.47 deleterious(0) probably_damaging(0.969) TCGA-EB-A41A-01 6 167549917 167549917 G A CCR6 Missense_Mutation p.V67M 0.49 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 6 167571311 167571311 G A GPR31 Silent p.F3F 0.35 TCGA-EB-A41A-01 6 167754435 167754435 T C TTLL2 Silent p.V349V 0.48 TCGA-EB-A41A-01 6 170697488 170697488 C T FAM120B Silent p.F799F 0.45 TCGA-EB-A41A-01 6 17826103 17826103 G A KIF13A Missense_Mutation p.P561L 0.26 tolerated(0.41) benign(0.001) TCGA-EB-A41A-01 6 24357871 24357871 G A KAAG1 Missense_Mutation p.D2N 0.24 tolerated_low_confidence(0.36) possibly_damaging(0.908) TCGA-EB-A41A-01 6 25777051 25777051 C T SLC17A4 Missense_Mutation p.P378S 0.25 tolerated(0.52) benign(0.147) TCGA-EB-A41A-01 6 25777294 25777294 G A SLC17A4 Intron 0.41 TCGA-EB-A41A-01 6 25799016 25799016 G A SLC17A1 Silent p.L467L 0.53 TCGA-EB-A41A-01 6 25861881 25861881 C T SLC17A3 Missense_Mutation p.R199Q 0.24 tolerated(0.06) possibly_damaging(0.577) TCGA-EB-A41A-01 6 26392564 26392564 C T BTN2A2 Intron 0.25 TCGA-EB-A41A-01 6 26638546 26638546 G A ZNF322 Missense_Mutation p.T79I 0.19 deleterious(0.02) probably_damaging(0.924) TCGA-EB-A41A-01 6 2779649 2779649 C T WRNIP1 Missense_Mutation p.S470F 0.25 deleterious(0.02) benign(0.023) TCGA-EB-A41A-01 6 27799111 27799111 G A HIST1H4K Silent p.N65N 0.29 TCGA-EB-A41A-01 6 27925324 27925324 C T OR2B6 Silent p.F102F 0.11 TCGA-EB-A41A-01 6 28227182 28227182 G A NKAPL Silent p.E11E 0.28 TCGA-EB-A41A-01 6 28227361 28227361 C T NKAPL Missense_Mutation p.S71L 0.28 deleterious(0.03) unknown(0) TCGA-EB-A41A-01 6 28542797 28542797 C T SCAND3 Missense_Mutation p.R562K 0.37 tolerated_low_confidence(0.82) benign(0) TCGA-EB-A41A-01 6 28871750 28871750 G A TRIM27 3'UTR 0.11 TCGA-EB-A41A-01 6 29054207 29054207 C T OR2B3 Missense_Mutation p.M273I 0.21 tolerated(0.12) benign(0.012) TCGA-EB-A41A-01 6 29323225 29323225 G A OR5V1 Missense_Mutation p.L250F 0.25 deleterious(0) probably_damaging(0.971) TCGA-EB-A41A-01 6 30078227 30078227 C T TRIM31 Missense_Mutation p.E248K 0.29 tolerated(0.46) benign(0.018) TCGA-EB-A41A-01 6 30627369 30627369 C T DHX16 Silent p.Q629Q 0.62 TCGA-EB-A41A-01 6 30698779 30698779 C T FLOT1 Silent p.R274R 0.29 TCGA-EB-A41A-01 6 30954436 30954436 G A MUC21 Missense_Mutation p.A162T 0.60 tolerated(0.59) unknown(0) TCGA-EB-A41A-01 6 31696511 31696511 G A DDAH2 Silent p.V103V 0.24 TCGA-EB-A41A-01 6 31727214 31727214 G T MSH5 Nonsense_Mutation p.E474* 0.18 TCGA-EB-A41A-01 6 31759511 31759511 G A VARS Missense_Mutation p.P326S 0.27 tolerated(0.43) benign(0.001) TCGA-EB-A41A-01 6 32085407 32085407 G A ATF6B Missense_Mutation p.L497F 0.53 tolerated(0.11) probably_damaging(0.993) TCGA-EB-A41A-01 6 32552021 32552021 C T HLA-DRB1 Missense_Mutation p.V79M 0.40 deleterious(0.01) possibly_damaging(0.664) TCGA-EB-A41A-01 6 32609164 32609164 G A HLA-DQA1 Missense_Mutation p.G54R 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A41A-01 6 32726638 32726638 G A HLA-DQB2 Missense_Mutation p.T212I 0.25 deleterious(0.03) benign(0.014) TCGA-EB-A41A-01 6 32782954 32782954 C T HLA-DOB Silent p.L76L 0.30 TCGA-EB-A41A-01 6 33131437 33131437 G A COL11A2 3'UTR 0.21 TCGA-EB-A41A-01 6 33146491 33146491 C T COL11A2 Missense_Mutation p.G476R 0.25 probably_damaging(0.996) TCGA-EB-A41A-01 6 33148450 33148450 C T COL11A2 Missense_Mutation p.E341K 0.33 possibly_damaging(0.486) TCGA-EB-A41A-01 6 33288354 33288354 G A DAXX Silent p.L352L 0.29 TCGA-EB-A41A-01 6 33288355 33288355 T A DAXX Silent p.A351A 0.28 TCGA-EB-A41A-01 6 33290781 33290781 G T DAXX 5'UTR 0.33 TCGA-EB-A41A-01 6 33290782 33290782 C T DAXX 5'UTR 0.31 TCGA-EB-A41A-01 6 34100785 34100785 G A GRM4 Silent p.I163I 0.25 TCGA-EB-A41A-01 6 348139 348139 C T DUSP22 Silent p.I100I 0.22 TCGA-EB-A41A-01 6 35543561 35543561 C T FKBP5 3'UTR 0.34 TCGA-EB-A41A-01 6 35959447 35959447 C T SLC26A8 Missense_Mutation p.E311K 0.58 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 36103816 36103816 C T MAPK13 Silent p.V146V 0.28 TCGA-EB-A41A-01 6 36270136 36270136 C T PNPLA1 Missense_Mutation p.P425L 0.26 deleterious_low_confidence(0.04) benign(0.025) TCGA-EB-A41A-01 6 36334240 36334240 G A ETV7 3'UTR 0.32 TCGA-EB-A41A-01 6 36652113 36652113 C T CDKN1A Missense_Mutation p.P79S 0.31 tolerated(0.61) benign(0.002) TCGA-EB-A41A-01 6 36978766 36978766 C T FGD2 Silent p.I106I 0.21 TCGA-EB-A41A-01 6 37299002 37299002 C T TBC1D22B 3'UTR 0.62 TCGA-EB-A41A-01 6 37606088 37606088 A T MDGA1 Missense_Mutation p.I890N 0.19 deleterious(0) probably_damaging(0.929) TCGA-EB-A41A-01 6 38858436 38858436 G A DNAH8 Missense_Mutation p.G2611R 0.21 probably_damaging(0.983) TCGA-EB-A41A-01 6 38905874 38905874 G A DNAH8 Silent p.E3679E 0.27 TCGA-EB-A41A-01 6 39282605 39282605 C T KCNK16 3'UTR 0.43 TCGA-EB-A41A-01 6 39507906 39507906 G A KIF6 Silent p.S506S 0.27 TCGA-EB-A41A-01 6 41126774 41126774 T C TREM2 Silent p.P171P 0.27 TCGA-EB-A41A-01 6 42231306 42231306 C T TRERF1 Missense_Mutation p.E546K 0.27 deleterious(0.01) benign(0.292) TCGA-EB-A41A-01 6 42975938 42975938 G A PPP2R5D Splice_Site p.X286_splice 0.23 TCGA-EB-A41A-01 6 43170848 43170848 T G CUL9 Missense_Mutation p.V1252G 0.23 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 6 43222323 43222323 G A TTBK1 Silent p.R170R 0.19 TCGA-EB-A41A-01 6 43322722 43322722 G A ZNF318 Missense_Mutation p.P784S 0.32 possibly_damaging(0.557) TCGA-EB-A41A-01 6 43484868 43484868 G A POLR1C Silent p.V7V 0.28 TCGA-EB-A41A-01 6 43484869 43484869 G A POLR1C Missense_Mutation p.E8K 0.28 tolerated(0.08) benign(0.04) TCGA-EB-A41A-01 6 44230295 44230295 A G NFKBIE Splice_Site p.X295_splice 0.27 TCGA-EB-A41A-01 6 46593244 46593244 A G CYP39A1 Missense_Mutation p.V281A 0.27 tolerated(0.14) benign(0.034) TCGA-EB-A41A-01 6 46609933 46609933 C T CYP39A1 Missense_Mutation p.E94K 0.21 tolerated(0.1) benign(0.029) TCGA-EB-A41A-01 6 46626610 46626610 C T SLC25A27 Intron 0.66 TCGA-EB-A41A-01 6 46793098 46793098 C T MEP1A Missense_Mutation p.P216S 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 47681972 47681972 G A GPR115 Missense_Mutation p.E331K 0.57 tolerated(0.29) benign(0.014) TCGA-EB-A41A-01 6 49754076 49754076 C T PGK2 Silent p.K275K 0.27 TCGA-EB-A41A-01 6 49754118 49754118 C T PGK2 Silent p.E261E 0.28 TCGA-EB-A41A-01 6 49754532 49754532 G A PGK2 Silent p.R123R 0.30 TCGA-EB-A41A-01 6 49754838 49754838 C T PGK2 Missense_Mutation p.M21I 0.29 tolerated(0.97) benign(0.01) TCGA-EB-A41A-01 6 49928133 49928133 G A DEFB114 Missense_Mutation p.R28C 0.24 deleterious_low_confidence(0) benign(0) TCGA-EB-A41A-01 6 49986673 49986673 C T DEFB110 3'UTR 0.26 TCGA-EB-A41A-01 6 50740563 50740563 G A TFAP2D Missense_Mutation p.E449K 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-EB-A41A-01 6 51908447 51908447 C T PKHD1 Missense_Mutation p.V933I 0.30 tolerated(0.06) benign(0.181) TCGA-EB-A41A-01 6 52101834 52101834 G A IL17F Silent p.V129V 0.23 TCGA-EB-A41A-01 6 52992974 52992974 G A GCM1 3'UTR 0.31 TCGA-EB-A41A-01 6 53747701 53747701 C T LRRC1 Missense_Mutation p.P125S 0.22 tolerated(0.31) benign(0.369) TCGA-EB-A41A-01 6 54025323 54025323 C T MLIP Missense_Mutation p.P254S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41A-01 6 54173405 54173405 G A TINAG Missense_Mutation p.M19I 0.30 tolerated_low_confidence(0.07) benign(0.03) TCGA-EB-A41A-01 6 54804623 54804623 C T FAM83B Missense_Mutation p.S285L 0.08 tolerated(0.36) benign(0.027) TCGA-EB-A41A-01 6 54805411 54805411 C T FAM83B Missense_Mutation p.P548S 0.23 tolerated(0.52) benign(0.288) TCGA-EB-A41A-01 6 55113572 55113572 G A HCRTR2 Nonsense_Mutation p.W120* 0.29 TCGA-EB-A41A-01 6 55119985 55119985 C T HCRTR2 Missense_Mutation p.R152W 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 55120037 55120037 C T HCRTR2 Missense_Mutation p.A169V 0.36 deleterious(0) probably_damaging(0.971) TCGA-EB-A41A-01 6 55300395 55300395 G A HMGCLL1 3'UTR 0.45 TCGA-EB-A41A-01 6 55378951 55378951 G A HMGCLL1 Missense_Mutation p.S176F 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 55638882 55638882 G A BMP5 Missense_Mutation p.S331F 0.26 tolerated(0.06) benign(0.308) TCGA-EB-A41A-01 6 55684513 55684513 C T BMP5 Missense_Mutation p.R208Q 0.18 tolerated(0.41) benign(0.168) TCGA-EB-A41A-01 6 56044681 56044681 C T COL21A1 Missense_Mutation p.G112E 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 56483759 56483759 G A DST Intron 0.34 TCGA-EB-A41A-01 6 57512723 57512723 C T PRIM2 3'UTR 0.18 TCGA-EB-A41A-01 6 62390845 62390845 G A KHDRBS2 3'UTR 0.17 TCGA-EB-A41A-01 6 62611258 62611258 G A KHDRBS2 Missense_Mutation p.R168C 0.41 tolerated(0.18) benign(0.139) TCGA-EB-A41A-01 6 62757815 62757815 G A KHDRBS2 Silent p.L102L 0.45 TCGA-EB-A41A-01 6 62887190 62887190 C T KHDRBS2 Missense_Mutation p.G40E 0.48 tolerated(0.88) benign(0) TCGA-EB-A41A-01 6 637842 637842 G A EXOC2 5'UTR 0.24 TCGA-EB-A41A-01 6 63990075 63990075 C T LGSN Missense_Mutation p.D461N 0.47 tolerated(0.09) benign(0.091) TCGA-EB-A41A-01 6 6625170 6625170 G A LY86 Missense_Mutation p.D50N 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 6 69728383 69728383 G A BAI3 Missense_Mutation p.G700E 0.43 tolerated(0.21) possibly_damaging(0.879) TCGA-EB-A41A-01 6 70064217 70064217 C T BAI3 Silent p.I1184I 0.31 TCGA-EB-A41A-01 6 70098619 70098619 C T BAI3 Missense_Mutation p.P1469S 0.44 tolerated(0.25) probably_damaging(0.932) TCGA-EB-A41A-01 6 7230971 7230971 C T RREB1 Missense_Mutation p.P880L 0.06 deleterious(0.01) benign(0.287) TCGA-EB-A41A-01 6 7290091 7290091 G A SSR1 3'UTR 0.31 TCGA-EB-A41A-01 6 73110447 73110447 C T RIMS1 3'Flank 0.20 TCGA-EB-A41A-01 6 73904830 73904830 C T KCNQ5 Missense_Mutation p.S850F 0.38 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EB-A41A-01 6 74104634 74104634 C T DDX43 Silent p.S2S 0.46 TCGA-EB-A41A-01 6 7584921 7584921 G A DSP Missense_Mutation p.E2476K 0.26 probably_damaging(0.998) TCGA-EB-A41A-01 6 75858121 75858121 G A COL12A1 Nonsense_Mutation p.R1414* 0.42 TCGA-EB-A41A-01 6 75898081 75898081 C T COL12A1 Missense_Mutation p.E332K 0.50 probably_damaging(0.991) TCGA-EB-A41A-01 6 76022447 76022447 C T FILIP1 Missense_Mutation p.R1034Q 0.43 tolerated(0.2) probably_damaging(0.97) TCGA-EB-A41A-01 6 76023673 76023673 T C FILIP1 Silent p.E625E 0.43 TCGA-EB-A41A-01 6 76600944 76600944 G A MYO6 Splice_Site p.X956_splice 0.27 TCGA-EB-A41A-01 6 76657234 76657234 C T IMPG1 Missense_Mutation p.R614Q 0.29 tolerated(1) benign(0.101) TCGA-EB-A41A-01 6 76744407 76744407 C T IMPG1 Silent p.E133E 0.38 TCGA-EB-A41A-01 6 83848462 83848462 C T DOPEY1 Silent p.F1567F 0.39 TCGA-EB-A41A-01 6 86324884 86324884 A - SYNCRIP Frame_Shift_Del p.Y488Mfs*74 0.33 TCGA-EB-A41A-01 6 87725311 87725311 C T HTR1E Missense_Mutation p.R87C 0.40 deleterious(0.02) possibly_damaging(0.505) TCGA-EB-A41A-01 6 90605360 90605360 C T GJA10 Silent p.D391D 0.38 TCGA-EB-A41A-01 6 90605361 90605361 C T GJA10 Missense_Mutation p.P392S 0.38 tolerated(0.47) benign(0.002) TCGA-EB-A41A-01 6 93953119 93953119 C T EPHA7 3'UTR 0.66 TCGA-EB-A41A-01 6 94120243 94120243 G A EPHA7 Nonsense_Mutation p.Q270* 0.48 TCGA-EB-A41A-01 6 96652077 96652077 C T FUT9 Missense_Mutation p.S349F 0.43 deleterious(0.02) possibly_damaging(0.507) TCGA-EB-A41A-01 6 9897203 9897203 C T OFCC1 Intron 0.38 TCGA-EB-A41A-01 6 9903665 9903665 C T OFCC1 Intron 0.25 TCGA-EB-A41A-01 7 100084776 100084776 G A NYAP1 Missense_Mutation p.G134E 0.30 tolerated(0.08) benign(0.122) TCGA-EB-A41A-01 7 100085888 100085888 C T NYAP1 Missense_Mutation p.P182S 0.44 tolerated(0.41) benign(0.033) TCGA-EB-A41A-01 7 100086959 100086959 G A NYAP1 Missense_Mutation p.D539N 0.45 tolerated(0.16) possibly_damaging(0.548) TCGA-EB-A41A-01 7 100349887 100349887 C T ZAN Missense_Mutation p.P720L 0.43 benign(0.003) TCGA-EB-A41A-01 7 100417784 100417784 G A EPHB4 Missense_Mutation p.P315S 0.40 tolerated(0.15) benign(0.002) TCGA-EB-A41A-01 7 100488959 100488959 C T ACHE Silent p.G518G 0.45 TCGA-EB-A41A-01 7 103179761 103179761 C T RELN Missense_Mutation p.G2315E 0.43 tolerated(0.1) probably_damaging(1) TCGA-EB-A41A-01 7 103183194 103183194 C T RELN Missense_Mutation p.D2219N 0.50 tolerated(0.11) probably_damaging(0.998) TCGA-EB-A41A-01 7 103322663 103322663 C T RELN Missense_Mutation p.E397K 0.39 deleterious(0.03) probably_damaging(0.98) TCGA-EB-A41A-01 7 106509723 106509723 G A PIK3CG Missense_Mutation p.E573K 0.42 tolerated(0.14) benign(0.348) TCGA-EB-A41A-01 7 107115402 107115402 A G GPR22 Silent p.K299K 0.39 TCGA-EB-A41A-01 7 107678038 107678038 C T LAMB4 Missense_Mutation p.E1492K 0.48 deleterious(0.02) possibly_damaging(0.859) TCGA-EB-A41A-01 7 108524062 108524062 C T C7orf66 3'UTR 0.43 TCGA-EB-A41A-01 7 11445947 11445947 G A THSD7A Missense_Mutation p.S1406F 0.44 tolerated(0.13) benign(0.396) TCGA-EB-A41A-01 7 119914618 119914618 G A KCND2 5'UTR 0.27 TCGA-EB-A41A-01 7 121651886 121651886 C T PTPRZ1 Missense_Mutation p.A929V 0.40 deleterious_low_confidence(0.05) benign(0.011) TCGA-EB-A41A-01 7 122809260 122809260 G A SLC13A1 Silent p.V165V 0.25 TCGA-EB-A41A-01 7 123517147 123517147 C T HYAL4 Missense_Mutation p.P462S 0.48 tolerated(1) benign(0.001) TCGA-EB-A41A-01 7 128481310 128481310 G A FLNC Missense_Mutation p.E634K 0.45 tolerated(0.08) possibly_damaging(0.881) TCGA-EB-A41A-01 7 128484075 128484075 G A FLNC Missense_Mutation p.E983K 0.41 tolerated(0.07) benign(0.314) TCGA-EB-A41A-01 7 128494966 128494966 G A FLNC Missense_Mutation p.G2379S 0.15 deleterious(0) probably_damaging(0.948) TCGA-EB-A41A-01 7 128585919 128585919 G A IRF5 Silent p.G72G 0.32 TCGA-EB-A41A-01 7 129770632 129770632 G A KLHDC10 3'UTR 0.49 TCGA-EB-A41A-01 7 130025132 130025132 C T CPA1 Silent p.L311L 0.41 TCGA-EB-A41A-01 7 131878822 131878822 A C PLXNA4 Missense_Mutation p.M952R 0.29 deleterious(0) benign(0.021) TCGA-EB-A41A-01 7 132192761 132192761 G A PLXNA4 Missense_Mutation p.S231L 0.47 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 7 133876441 133876441 G A LRGUK Missense_Mutation p.E457K 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 7 134217804 134217804 G A AKR1B10 Missense_Mutation p.G134R 0.42 deleterious(0.03) benign(0.005) TCGA-EB-A41A-01 7 134896313 134896313 G A WDR91 5'Flank 0.47 TCGA-EB-A41A-01 7 138264004 138264004 C T TRIM24 Missense_Mutation p.S771F 0.39 deleterious(0.05) benign(0.193) TCGA-EB-A41A-01 7 138601801 138601801 G A KIAA1549 Silent p.F857F 0.29 TCGA-EB-A41A-01 7 138602273 138602273 G A KIAA1549 Missense_Mutation p.S700F 0.33 deleterious(0) possibly_damaging(0.907) TCGA-EB-A41A-01 7 139754484 139754484 G A PARP12 Silent p.I280I 0.33 TCGA-EB-A41A-01 7 140218403 140218403 C T DENND2A 3'UTR 0.55 TCGA-EB-A41A-01 7 140394651 140394651 C T ADCK2 3'UTR 0.53 TCGA-EB-A41A-01 7 141464672 141464674 CTT - TAS2R3 In_Frame_Del p.F241del 0.50 TCGA-EB-A41A-01 7 141619313 141619313 C T OR9A4 Missense_Mutation p.P213L 0.38 tolerated(0.75) possibly_damaging(0.521) TCGA-EB-A41A-01 7 141619579 141619579 C T OR9A4 Missense_Mutation p.R302W 0.38 deleterious(0.04) benign(0.021) TCGA-EB-A41A-01 7 141722220 141722220 G A MGAM Missense_Mutation p.R288K 0.29 deleterious(0.03) benign(0.246) TCGA-EB-A41A-01 7 141730287 141730287 C T MGAM Silent p.I449I 0.35 TCGA-EB-A41A-01 7 142176776 142176776 G A TRBV7-4 Silent p.L5L 0.51 TCGA-EB-A41A-01 7 142197742 142197742 C T TRBV11-2 RNA 0.38 TCGA-EB-A41A-01 7 142250978 142250978 G A TRBV6-4 Silent p.I23I 0.38 TCGA-EB-A41A-01 7 142334237 142334237 G A TRBV20-1 5'UTR 0.48 TCGA-EB-A41A-01 7 142364268 142364268 A C TRBV24-1 Missense_Mutation p.Y12S 0.48 tolerated(0.19) benign(0.004) TCGA-EB-A41A-01 7 142479926 142479926 G A PRSS3P2 RNA 0.45 TCGA-EB-A41A-01 7 142622683 142622683 G A TRPV5 Missense_Mutation p.R355C 0.36 tolerated(0.14) benign(0.033) TCGA-EB-A41A-01 7 142658153 142658153 G A KEL Missense_Mutation p.H88Y 0.38 tolerated(0.18) benign(0.002) TCGA-EB-A41A-01 7 142658926 142658926 C T KEL Missense_Mutation p.E13K 0.35 tolerated_low_confidence(0.48) benign(0.011) TCGA-EB-A41A-01 7 143028362 143028362 G A CLCN1 Missense_Mutation p.M339I 0.36 deleterious(0.02) possibly_damaging(0.842) TCGA-EB-A41A-01 7 143053639 143053639 G A FAM131B 3'UTR 0.49 TCGA-EB-A41A-01 7 143096771 143096771 C T EPHA1 Missense_Mutation p.E270K 0.34 tolerated(0.21) possibly_damaging(0.804) TCGA-EB-A41A-01 7 143175559 143175559 C T TAS2R41 Silent p.V198V 0.46 TCGA-EB-A41A-01 7 143175683 143175683 C T TAS2R41 Missense_Mutation p.L240F 0.43 tolerated(0.1) possibly_damaging(0.549) TCGA-EB-A41A-01 7 143747631 143747631 G A OR2A5 Missense_Mutation p.G46E 0.43 deleterious(0.03) benign(0.031) TCGA-EB-A41A-01 7 143806855 143806855 C T OR2A2 Silent p.F60F 0.38 TCGA-EB-A41A-01 7 143956099 143956099 C T OR2A7 Missense_Mutation p.G208E 0.32 deleterious(0.01) probably_damaging(1) TCGA-EB-A41A-01 7 144060064 144060064 C T ARHGEF5 Missense_Mutation p.P101L 0.25 tolerated(0.07) benign(0.038) TCGA-EB-A41A-01 7 144062569 144062569 C T ARHGEF5 Missense_Mutation p.S936F 0.24 deleterious(0.05) benign(0.132) TCGA-EB-A41A-01 7 144068391 144068391 G A ARHGEF5 Silent p.Q1223Q 0.12 TCGA-EB-A41A-01 7 147092805 147092805 G A CNTNAP2 Missense_Mutation p.E535K 0.42 tolerated(0.31) benign(0.03) TCGA-EB-A41A-01 7 1480225 1480225 A G MICALL2 Splice_Site p.X602_splice 0.21 TCGA-EB-A41A-01 7 150417963 150417963 C T GIMAP1 Silent p.L291L 0.57 TCGA-EB-A41A-01 7 151265922 151265922 G A PRKAG2 Silent p.F371F 0.41 TCGA-EB-A41A-01 7 151664306 151664306 G A GALNTL5 5'UTR 0.49 TCGA-EB-A41A-01 7 151699961 151699961 G A GALNTL5 Missense_Mutation p.G274E 0.44 deleterious(0.02) probably_damaging(1) TCGA-EB-A41A-01 7 151962208 151962208 G A KMT2C Missense_Mutation p.H367Y 0.05 probably_damaging(0.995) TCGA-EB-A41A-01 7 156436587 156436587 G A RNF32 Splice_Site p.X5_splice 0.35 TCGA-EB-A41A-01 7 156469374 156469374 A T RNF32 3'UTR 0.27 TCGA-EB-A41A-01 7 156469375 156469375 A T RNF32 3'UTR 0.26 TCGA-EB-A41A-01 7 157985097 157985097 G A PTPRN2 Silent p.F157F 0.35 TCGA-EB-A41A-01 7 16714191 16714191 C T BZW2 Silent p.I71I 0.45 TCGA-EB-A41A-01 7 18066503 18066503 C T PRPS1L1 Silent p.R301R 0.39 TCGA-EB-A41A-01 7 18669075 18669075 C T HDAC9 Missense_Mutation p.S256L 0.37 deleterious(0.01) benign(0.311) TCGA-EB-A41A-01 7 18687434 18687434 G A HDAC9 Silent p.Q354Q 0.46 TCGA-EB-A41A-01 7 23239997 23239997 C T NUPL2 Missense_Mutation p.S302L 0.48 deleterious(0) possibly_damaging(0.86) TCGA-EB-A41A-01 7 24880379 24880379 G A OSBPL3 Silent p.V475V 0.44 TCGA-EB-A41A-01 7 2577881 2577881 G A BRAT1 Missense_Mutation p.P763L 0.32 tolerated(0.56) benign(0.006) TCGA-EB-A41A-01 7 26225006 26225006 A G NFE2L3 Missense_Mutation p.N563S 0.45 deleterious(0.03) possibly_damaging(0.685) TCGA-EB-A41A-01 7 27134044 27134044 G A HOXA1 3'UTR 0.32 TCGA-EB-A41A-01 7 31617566 31617566 G A CCDC129 Missense_Mutation p.E256K 0.43 tolerated(0.09) possibly_damaging(0.557) TCGA-EB-A41A-01 7 31862830 31862830 C T PDE1C Missense_Mutation p.R540Q 0.35 tolerated(0.07) probably_damaging(0.936) TCGA-EB-A41A-01 7 32110064 32110064 C T PDE1C Intron 0.45 TCGA-EB-A41A-01 7 34125549 34125549 C T BMPER Silent p.S530S 0.45 TCGA-EB-A41A-01 7 35244085 35244085 G A TBX20 Nonsense_Mutation p.R334* 0.57 TCGA-EB-A41A-01 7 37951777 37951777 A T SFRP4 Nonsense_Mutation p.C245* 0.14 TCGA-EB-A41A-01 7 37951818 37951818 G A SFRP4 Nonsense_Mutation p.R232* 0.17 TCGA-EB-A41A-01 7 38259166 38259166 G A STARD3NL Missense_Mutation p.R185K 0.37 tolerated(0.44) possibly_damaging(0.867) TCGA-EB-A41A-01 7 38356925 38356925 C T TRGV9 Missense_Mutation p.G20D 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A41A-01 7 38424361 38424361 G A AMPH 3'UTR 0.48 TCGA-EB-A41A-01 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.46 tolerated(0.1) possibly_damaging(0.816) TCGA-EB-A41A-01 7 44048446 44048446 G A SPDYE1 3'UTR 0.83 TCGA-EB-A41A-01 7 44104758 44104758 G A PGAM2 Missense_Mutation p.P124L 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A41A-01 7 44148712 44148712 C T AEBP1 Missense_Mutation p.P342L 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EB-A41A-01 7 44180665 44180665 C T MYL7 Silent p.R4R 0.46 TCGA-EB-A41A-01 7 47814580 47814580 C T PKD1L1 3'UTR 0.42 TCGA-EB-A41A-01 7 47898405 47898405 C T PKD1L1 Missense_Mutation p.V1410M 0.39 tolerated(0.06) benign(0.03) TCGA-EB-A41A-01 7 47937734 47937734 C T PKD1L1 Missense_Mutation p.D708N 0.42 tolerated(0.35) possibly_damaging(0.465) TCGA-EB-A41A-01 7 50611760 50611760 C T DDC Silent p.R8R 0.45 TCGA-EB-A41A-01 7 53104265 53104265 C T POM121L12 3'UTR 0.33 TCGA-EB-A41A-01 7 54636770 54636770 T A VSTM2A Missense_Mutation p.L235M 0.43 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-EB-A41A-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.28 TCGA-EB-A41A-01 7 6054871 6054871 C T AIMP2 Missense_Mutation p.S77F 0.46 deleterious(0) probably_damaging(0.987) TCGA-EB-A41A-01 7 62751964 62751964 G A ZNF733P RNA 0.34 TCGA-EB-A41A-01 7 63720615 63720615 G A ZNF679 Missense_Mutation p.R19K 0.40 tolerated(0.08) probably_damaging(0.992) TCGA-EB-A41A-01 7 63726580 63726580 G A ZNF679 Missense_Mutation p.G190D 0.32 tolerated(0.17) possibly_damaging(0.674) TCGA-EB-A41A-01 7 63981447 63981447 A G ZNF680 3'UTR 0.39 TCGA-EB-A41A-01 7 64168822 64168822 C T ZNF107 Missense_Mutation p.H714Y 0.37 deleterious(0.02) probably_damaging(0.909) TCGA-EB-A41A-01 7 66515031 66515031 C T TYW1 Silent p.L360L 0.41 TCGA-EB-A41A-01 7 72412527 72412527 C T POM121 Silent p.I400I 0.41 TCGA-EB-A41A-01 7 72683322 72683322 C T GTF2IRD2P1 RNA 0.33 TCGA-EB-A41A-01 7 73245425 73245425 G A CLDN4 5'UTR 0.36 TCGA-EB-A41A-01 7 73280166 73280166 G A WBSCR28 Missense_Mutation p.G254E 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A41A-01 7 75398903 75398903 C A CCL26 3'UTR 0.73 TCGA-EB-A41A-01 7 75608800 75608800 A T POR Missense_Mutation p.Q90L 0.26 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 7 76908122 76908122 G A CCDC146 Silent p.R498R 0.43 TCGA-EB-A41A-01 7 80427427 80427427 G A SEMA3C Missense_Mutation p.P371L 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 7 80427429 80427429 A T SEMA3C Silent p.I370I 0.43 TCGA-EB-A41A-01 7 80440014 80440014 G C SEMA3C Missense_Mutation p.Q151E 0.37 tolerated(1) benign(0.197) TCGA-EB-A41A-01 7 82389990 82389990 G A PCLO Nonsense_Mutation p.R5085* 0.48 TCGA-EB-A41A-01 7 82390042 82390042 T A PCLO Missense_Mutation p.K5067N 0.40 unknown(0) TCGA-EB-A41A-01 7 82544594 82544594 G A PCLO Silent p.L4236L 0.31 TCGA-EB-A41A-01 7 82581512 82581512 C T PCLO Silent p.V2919V 0.38 TCGA-EB-A41A-01 7 82583260 82583260 C T PCLO Missense_Mutation p.E2337K 0.42 unknown(0) TCGA-EB-A41A-01 7 82764655 82764655 T C PCLO Silent p.E737E 0.45 TCGA-EB-A41A-01 7 82784369 82784369 G A PCLO Missense_Mutation p.P530S 0.42 possibly_damaging(0.803) TCGA-EB-A41A-01 7 84685073 84685073 G A SEMA3D Missense_Mutation p.S274F 0.38 tolerated(0.12) benign(0.21) TCGA-EB-A41A-01 7 86394390 86394390 G A GRM3 5'UTR 0.33 TCGA-EB-A41A-01 7 86493793 86493793 G A GRM3 3'UTR 0.47 TCGA-EB-A41A-01 7 86990745 86990745 C T CROT Missense_Mutation p.R122C 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 7 87179598 87179598 C T ABCB1 Silent p.L413L 0.50 TCGA-EB-A41A-01 7 87912207 87912207 G A STEAP4 Missense_Mutation p.R245C 0.51 deleterious(0.01) possibly_damaging(0.677) TCGA-EB-A41A-01 7 91682179 91682179 C T AKAP9 Silent p.D1836D 0.41 TCGA-EB-A41A-01 7 92730681 92730681 G A SAMD9 Missense_Mutation p.S1577F 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 7 94035004 94035004 G A COL1A2 Missense_Mutation p.G169E 0.36 unknown(0) TCGA-EB-A41A-01 7 94055158 94055158 C T COL1A2 Missense_Mutation p.R978C 0.59 unknown(0) TCGA-EB-A41A-01 7 94917905 94917905 G A PPP1R9A Missense_Mutation p.E1263K 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A41A-01 7 97935801 97935801 C T BAIAP2L1 Silent p.T397T 0.45 TCGA-EB-A41A-01 7 98254427 98254427 C T NPTX2 Silent p.I279I 0.38 TCGA-EB-A41A-01 7 98995508 98995508 C T PDAP1 Missense_Mutation p.R155Q 0.36 tolerated(0.09) benign(0.005) TCGA-EB-A41A-01 8 101932911 101932911 G A YWHAZ 3'UTR 0.39 TCGA-EB-A41A-01 8 10466836 10466836 G A RP1L1 Missense_Mutation p.P1591L 0.44 unknown(0) TCGA-EB-A41A-01 8 106814336 106814336 C T ZFPM2 Missense_Mutation p.P676S 0.42 tolerated(0.72) benign(0.001) TCGA-EB-A41A-01 8 106814337 106814337 C T ZFPM2 Missense_Mutation p.P676L 0.41 tolerated(0.09) benign(0.046) TCGA-EB-A41A-01 8 106814526 106814526 G A ZFPM2 Missense_Mutation p.R739K 0.35 tolerated(0.29) probably_damaging(0.986) TCGA-EB-A41A-01 8 108913239 108913239 G A RSPO2 3'UTR 0.47 TCGA-EB-A41A-01 8 108973025 108973025 C T RSPO2 Missense_Mutation p.D102N 0.40 deleterious(0) possibly_damaging(0.888) TCGA-EB-A41A-01 8 110100179 110100179 C T TRHR Silent p.I146I 0.39 TCGA-EB-A41A-01 8 110397839 110397839 G A PKHD1L1 Silent p.G183G 0.38 TCGA-EB-A41A-01 8 110413811 110413811 G A PKHD1L1 Missense_Mutation p.G456E 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A41A-01 8 110441590 110441590 G A PKHD1L1 Missense_Mutation p.G1008R 0.33 deleterious(0) probably_damaging(0.959) TCGA-EB-A41A-01 8 110487395 110487395 G A PKHD1L1 Missense_Mutation p.G2885E 0.36 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 8 110510783 110510783 G A PKHD1L1 Silent p.R3564R 0.48 TCGA-EB-A41A-01 8 11189656 11189656 T C SLC35G5 3'UTR 0.08 TCGA-EB-A41A-01 8 113317143 113317143 A G CSMD3 Silent p.V2691V 0.39 TCGA-EB-A41A-01 8 113326251 113326251 G A CSMD3 Missense_Mutation p.S2527F 0.37 tolerated(0.07) probably_damaging(0.961) TCGA-EB-A41A-01 8 113353855 113353855 C T CSMD3 Missense_Mutation p.R2168Q 0.29 tolerated(0.23) benign(0.166) TCGA-EB-A41A-01 8 113364747 113364747 G A CSMD3 Silent p.S2051S 0.35 TCGA-EB-A41A-01 8 113418778 113418778 C T CSMD3 Nonsense_Mutation p.W1928* 0.40 TCGA-EB-A41A-01 8 113421248 113421248 C T CSMD3 Silent p.Q1803Q 0.46 TCGA-EB-A41A-01 8 118159302 118159302 G A SLC30A8 Missense_Mutation p.E61K 0.38 tolerated(0.22) benign(0.309) TCGA-EB-A41A-01 8 120575151 120575151 G C ENPP2 Silent p.L841L 0.46 TCGA-EB-A41A-01 8 120744391 120744391 G A TAF2 Missense_Mutation p.P1125S 0.41 tolerated_low_confidence(0.75) benign(0) TCGA-EB-A41A-01 8 121239517 121239517 A C COL14A1 Missense_Mutation p.E688A 0.33 tolerated(0.31) probably_damaging(0.999) TCGA-EB-A41A-01 8 121344399 121344399 G A COL14A1 Missense_Mutation p.G1560E 0.58 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 8 121381620 121381620 G A COL14A1 Missense_Mutation p.G1736E 0.49 deleterious(0) possibly_damaging(0.798) TCGA-EB-A41A-01 8 123964219 123964219 G A ZHX2 Missense_Mutation p.E157K 0.47 deleterious(0.01) benign(0.221) TCGA-EB-A41A-01 8 124195365 124195365 C T FAM83A Missense_Mutation p.A90V 0.38 tolerated(0.22) benign(0.029) TCGA-EB-A41A-01 8 125110103 125110103 C T FER1L6 Missense_Mutation p.S1621L 0.35 deleterious(0.03) possibly_damaging(0.582) TCGA-EB-A41A-01 8 12952444 12952444 C T DLC1 Missense_Mutation p.G1117E 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 8 13072254 13072254 C T DLC1 Intron 0.44 TCGA-EB-A41A-01 8 13258985 13258985 G A DLC1 Silent p.H389H 0.29 TCGA-EB-A41A-01 8 13258986 13258986 T A DLC1 Missense_Mutation p.H389L 0.30 tolerated_low_confidence(0.06) benign(0.075) TCGA-EB-A41A-01 8 133141558 133141558 C T KCNQ3 Missense_Mutation p.G857E 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 8 133899318 133899318 C T TG Silent p.F567F 0.39 TCGA-EB-A41A-01 8 133961154 133961154 G A TG Silent p.V1789V 0.43 TCGA-EB-A41A-01 8 139277969 139277969 G A FAM135B Missense_Mutation p.H92Y 0.51 deleterious(0) benign(0.183) TCGA-EB-A41A-01 8 14022146 14022146 G A SGCZ Silent p.L164L 0.40 TCGA-EB-A41A-01 8 141595313 141595313 T C AGO2 Silent p.L40L 0.45 TCGA-EB-A41A-01 8 142222497 142222497 A - SLC45A4 Frame_Shift_Del p.V650Wfs*8 0.34 TCGA-EB-A41A-01 8 142228733 142228733 G A SLC45A4 Missense_Mutation p.H285Y 0.36 tolerated(0.06) benign(0.306) TCGA-EB-A41A-01 8 144991392 144991392 G A PLEC Silent p.S4336S 0.45 TCGA-EB-A41A-01 8 145095956 145095956 G A SPATC1 Silent p.V418V 0.48 TCGA-EB-A41A-01 8 145112517 145112517 G A OPLAH Missense_Mutation p.S419F 0.60 deleterious(0.01) benign(0.051) TCGA-EB-A41A-01 8 145622994 145622994 C T CPSF1 Missense_Mutation p.S725N 0.55 tolerated(0.37) benign(0.036) TCGA-EB-A41A-01 8 146225113 146225113 G A ZNF252P-AS1 5'Flank 0.42 TCGA-EB-A41A-01 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.33 deleterious(0) probably_damaging(0.973) TCGA-EB-A41A-01 8 16001120 16001120 C T MSR1 Missense_Mutation p.G327E 0.37 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 8 1616571 1616571 G A DLGAP2 Silent p.V549V 0.43 TCGA-EB-A41A-01 8 16850796 16850796 C T FGF20 Missense_Mutation p.E141K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 8 17417904 17417904 C T SLC7A2 Missense_Mutation p.P496S 0.44 tolerated(0.37) benign(0.004) TCGA-EB-A41A-01 8 20110744 20110744 G A LZTS1 Missense_Mutation p.S233F 0.53 deleterious(0.03) probably_damaging(0.965) TCGA-EB-A41A-01 8 2020574 2020574 G A MYOM2 Missense_Mutation p.E315K 0.52 tolerated(0.23) possibly_damaging(0.801) TCGA-EB-A41A-01 8 22432304 22432304 G T SORBS3 3'UTR 0.56 TCGA-EB-A41A-01 8 22432305 22432305 G T SORBS3 3'UTR 0.58 TCGA-EB-A41A-01 8 23174531 23174531 G A LOXL2 Missense_Mutation p.H523Y 0.41 deleterious(0.01) probably_damaging(0.943) TCGA-EB-A41A-01 8 24178897 24178897 C T ADAM28 Intron 0.60 TCGA-EB-A41A-01 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.35 TCGA-EB-A41A-01 8 24349474 24349474 T G ADAM7 Missense_Mutation p.M472R 0.45 deleterious(0.04) benign(0.009) TCGA-EB-A41A-01 8 27094340 27094340 G A STMN4 3'UTR 0.50 TCGA-EB-A41A-01 8 2813245 2813245 C T CSMD1 Missense_Mutation p.R3287K 0.14 benign(0.011) TCGA-EB-A41A-01 8 2965247 2965247 G A CSMD1 Silent p.F2276F 0.34 TCGA-EB-A41A-01 8 30402332 30402332 C T RBPMS Intron 0.50 TCGA-EB-A41A-01 8 3046501 3046501 C T CSMD1 Missense_Mutation p.G1811S 0.75 probably_damaging(1) TCGA-EB-A41A-01 8 30705811 30705811 G A TEX15 Silent p.F241F 0.38 TCGA-EB-A41A-01 8 33454896 33454896 G A DUSP26 Silent p.F46F 0.38 TCGA-EB-A41A-01 8 35579897 35579897 C T UNC5D Silent p.F429F 0.42 TCGA-EB-A41A-01 8 3611539 3611539 G A CSMD1 Missense_Mutation p.P282S 0.28 probably_damaging(0.999) TCGA-EB-A41A-01 8 37687441 37687441 C T GPR124 Silent p.S209S 0.35 TCGA-EB-A41A-01 8 37732620 37732620 G A RAB11FIP1 Silent p.S345S 0.37 TCGA-EB-A41A-01 8 37823755 37823755 G A ADRB3 Missense_Mutation p.S78L 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 8 39564406 39564406 G A ADAM18 Missense_Mutation p.G667E 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 8 39845455 39845455 C T IDO2 Missense_Mutation p.A185V 0.29 tolerated(0.35) benign(0) TCGA-EB-A41A-01 8 40532287 40532287 C T ZMAT4 Silent p.K171K 0.37 TCGA-EB-A41A-01 8 41580682 41580682 G A ANK1 Silent p.I323I 0.33 TCGA-EB-A41A-01 8 41832248 41832248 G A KAT6A Missense_Mutation p.R486C 0.35 probably_damaging(0.97) TCGA-EB-A41A-01 8 42231804 42231804 C T DKK4 Silent p.T163T 0.42 TCGA-EB-A41A-01 8 42586849 42586849 C T CHRNB3 Silent p.V133V 0.48 TCGA-EB-A41A-01 8 42587228 42587228 G A CHRNB3 Missense_Mutation p.D260N 0.40 tolerated(0.16) probably_damaging(1) TCGA-EB-A41A-01 8 4495021 4495021 G A CSMD1 Missense_Mutation p.P49S 0.40 probably_damaging(0.999) TCGA-EB-A41A-01 8 48691161 48691161 G A PRKDC Silent p.F3903F 0.33 TCGA-EB-A41A-01 8 52733170 52733170 G A PCMTD1 Missense_Mutation p.A272V 0.05 tolerated(0.38) benign(0.002) TCGA-EB-A41A-01 8 54147467 54147467 C T OPRK1 Silent p.V154V 0.41 TCGA-EB-A41A-01 8 55533752 55533752 C T RP1 Missense_Mutation p.L76F 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 8 55541799 55541799 C T RP1 Missense_Mutation p.S1786L 0.38 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 8 57228600 57228600 C T SDR16C5 Missense_Mutation p.E103K 0.37 deleterious(0.04) possibly_damaging(0.872) TCGA-EB-A41A-01 8 57353764 57353764 C T PENK 3'UTR 0.38 TCGA-EB-A41A-01 8 57358328 57358328 A T PENK Intron 0.42 TCGA-EB-A41A-01 8 61654280 61654280 G A CHD7 Missense_Mutation p.G97R 0.48 probably_damaging(0.956) TCGA-EB-A41A-01 8 61654281 61654281 G A CHD7 Missense_Mutation p.G97E 0.48 probably_damaging(0.931) TCGA-EB-A41A-01 8 61766054 61766054 C T CHD7 Missense_Mutation p.P2257L 0.30 benign(0.001) TCGA-EB-A41A-01 8 62468495 62468495 G A ASPH Silent p.I508I 0.38 TCGA-EB-A41A-01 8 67012334 67012334 G A DNAJC5B 3'UTR 0.29 TCGA-EB-A41A-01 8 67790898 67790898 C T MCMDC2 Missense_Mutation p.L191F 0.14 deleterious(0) probably_damaging(0.981) TCGA-EB-A41A-01 8 6794302 6794302 C T DEFA4 Silent p.Q40Q 0.41 TCGA-EB-A41A-01 8 68931864 68931864 A G PREX2 Silent p.E98E 0.37 TCGA-EB-A41A-01 8 69445306 69445306 T C C8orf34 Missense_Mutation p.F343L 0.41 deleterious(0.03) probably_damaging(0.971) TCGA-EB-A41A-01 8 69621237 69621237 G A C8orf34 Missense_Mutation p.G417E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 8 69621293 69621293 G A C8orf34 Missense_Mutation p.E436K 0.39 tolerated(0.43) benign(0.015) TCGA-EB-A41A-01 8 70515839 70515839 C T SULF1 Nonsense_Mutation p.R399* 0.35 TCGA-EB-A41A-01 8 70617443 70617443 G A SLCO5A1 Missense_Mutation p.A482V 0.40 deleterious(0.04) possibly_damaging(0.516) TCGA-EB-A41A-01 8 71646654 71646654 G A XKR9 Missense_Mutation p.E373K 0.27 deleterious(0.02) benign(0.118) TCGA-EB-A41A-01 8 73480108 73480108 G A KCNB2 Missense_Mutation p.E47K 0.45 deleterious(0.03) probably_damaging(0.981) TCGA-EB-A41A-01 8 73848520 73848520 G A KCNB2 Silent p.R310R 0.41 TCGA-EB-A41A-01 8 75157273 75157273 G A JPH1 Missense_Mutation p.P466S 0.38 tolerated(0.12) possibly_damaging(0.539) TCGA-EB-A41A-01 8 77617145 77617145 G A ZFHX4 Silent p.R274R 0.39 TCGA-EB-A41A-01 8 77763459 77763459 C T ZFHX4 Silent p.F1434F 0.42 TCGA-EB-A41A-01 8 77767036 77767036 G A ZFHX4 Missense_Mutation p.D2627N 0.49 probably_damaging(0.914) TCGA-EB-A41A-01 8 77767140 77767140 G A ZFHX4 Silent p.R2661R 0.43 TCGA-EB-A41A-01 8 77767673 77767673 C T ZFHX4 Missense_Mutation p.P2839L 0.30 benign(0.09) TCGA-EB-A41A-01 8 80549044 80549044 G A STMN2 Silent p.K9K 0.41 TCGA-EB-A41A-01 8 80567214 80567214 G A STMN2 Missense_Mutation p.E133K 0.37 deleterious(0.04) possibly_damaging(0.873) TCGA-EB-A41A-01 8 82627088 82627088 G A ZFAND1 Silent p.I103I 0.44 TCGA-EB-A41A-01 8 87679199 87679199 A T CNGB3 Missense_Mutation p.L269Q 0.41 deleterious(0) probably_damaging(0.979) TCGA-EB-A41A-01 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.46 deleterious(0.03) possibly_damaging(0.564) TCGA-EB-A41A-01 8 90967748 90967748 G A NBN Missense_Mutation p.S387F 0.47 tolerated(0.3) benign(0.013) TCGA-EB-A41A-01 8 92972505 92972505 C T RUNX1T1 Missense_Mutation p.G605R 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A41A-01 8 93023266 93023266 G A RUNX1T1 Silent p.N185N 0.38 TCGA-EB-A41A-01 8 95384472 95384472 G A RAD54B Missense_Mutation p.P887S 0.35 tolerated(0.13) benign(0.15) TCGA-EB-A41A-01 9 100890493 100890493 G A CORO2A Missense_Mutation p.P377L 0.46 deleterious(0) probably_damaging(0.958) TCGA-EB-A41A-01 9 101235571 101235571 C T GABBR2 Missense_Mutation p.E286K 0.44 tolerated(0.68) benign(0.004) TCGA-EB-A41A-01 9 101751478 101751478 G A COL15A1 Missense_Mutation p.G248R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A41A-01 9 103204408 103204408 C T MSANTD3 Missense_Mutation p.S63F 0.43 tolerated(0.44) probably_damaging(0.939) TCGA-EB-A41A-01 9 104048405 104048405 C T LPPR1 Missense_Mutation p.S91F 0.41 tolerated(0.22) benign(0.347) TCGA-EB-A41A-01 9 104133389 104133389 G A BAAT Missense_Mutation p.P100S 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A41A-01 9 104170392 104170392 C T ZNF189 Silent p.F114F 0.49 TCGA-EB-A41A-01 9 104170521 104170521 T C ZNF189 Silent p.F157F 0.49 TCGA-EB-A41A-01 9 104356723 104356723 C T PPP3R2 Missense_Mutation p.E164K 0.29 tolerated(0.06) benign(0.012) TCGA-EB-A41A-01 9 107298345 107298345 G A OR13C3 Silent p.F250F 0.41 TCGA-EB-A41A-01 9 107331726 107331726 C T OR13C8 Missense_Mutation p.S93F 0.39 deleterious(0.01) benign(0.004) TCGA-EB-A41A-01 9 107456920 107456920 G A OR13D1 Missense_Mutation p.G73E 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 9 111618135 111618135 G A ACTL7B Missense_Mutation p.P26S 0.37 tolerated(0.23) benign(0.002) TCGA-EB-A41A-01 9 111618136 111618136 G A ACTL7B Silent p.G25G 0.36 TCGA-EB-A41A-01 9 111976055 111976055 G A EPB41L4B Silent p.A559A 0.50 TCGA-EB-A41A-01 9 112143933 112143933 G A PTPN3 Missense_Mutation p.S888L 0.29 deleterious(0.05) benign(0.375) TCGA-EB-A41A-01 9 112899152 112899152 C T PALM2-AKAP2 Missense_Mutation p.S443L 0.32 deleterious(0) possibly_damaging(0.611) TCGA-EB-A41A-01 9 113238357 113238357 G C SVEP1 Intron 0.38 TCGA-EB-A41A-01 9 113703966 113703966 G A LPAR1 Silent p.I176I 0.36 TCGA-EB-A41A-01 9 114486106 114486106 C T C9orf84 Silent p.R576R 0.22 TCGA-EB-A41A-01 9 114490282 114490282 C T C9orf84 Missense_Mutation p.E425K 0.36 tolerated(0.07) benign(0.193) TCGA-EB-A41A-01 9 115567111 115567111 C T SNX30 Missense_Mutation p.S71L 0.22 deleterious(0.01) benign(0.122) TCGA-EB-A41A-01 9 116154484 116154484 T A ALAD Intron 0.32 TCGA-EB-A41A-01 9 117846589 117846589 G A TNC Missense_Mutation p.T677I 0.39 deleterious(0) possibly_damaging(0.673) TCGA-EB-A41A-01 9 123165338 123165338 G A CDK5RAP2 Missense_Mutation p.P1685S 0.41 tolerated(0.14) benign(0.017) TCGA-EB-A41A-01 9 123535038 123535038 C G FBXW2 Missense_Mutation p.E300D 0.50 tolerated(0.29) benign(0.001) TCGA-EB-A41A-01 9 125152546 125152546 G A PTGS1 Missense_Mutation p.E456K 0.43 tolerated(0.45) benign(0.005) TCGA-EB-A41A-01 9 125330498 125330498 G A OR1L8 Silent p.L87L 0.42 TCGA-EB-A41A-01 9 125330661 125330661 G A OR1L8 Silent p.F32F 0.39 TCGA-EB-A41A-01 9 125424437 125424437 C T OR1L1 Missense_Mutation p.S148F 0.43 deleterious(0.01) benign(0.208) TCGA-EB-A41A-01 9 125563331 125563331 G A OR1K1 Silent p.R310R 0.41 TCGA-EB-A41A-01 9 127253477 127253477 C T NR5A1 Missense_Mutation p.G341S 0.31 deleterious(0.02) possibly_damaging(0.595) TCGA-EB-A41A-01 9 130569893 130569893 C T FPGS Missense_Mutation p.L224F 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A41A-01 9 134952890 134952890 G A MED27 Missense_Mutation p.P96L 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-EB-A41A-01 9 136082624 136082624 C T OBP2B Missense_Mutation p.G126E 0.41 deleterious(0.02) possibly_damaging(0.887) TCGA-EB-A41A-01 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.43 benign(0.399) TCGA-EB-A41A-01 9 137779082 137779082 G A FCN2 Missense_Mutation p.G255R 0.50 tolerated(0.47) benign(0.073) TCGA-EB-A41A-01 9 138557560 138557560 G A LCN9 Missense_Mutation p.G146E 0.41 deleterious(0) probably_damaging(0.993) TCGA-EB-A41A-01 9 138713720 138713720 G A CAMSAP1 Silent p.P929P 0.45 TCGA-EB-A41A-01 9 139265344 139265344 C T CARD9 Silent p.Q192Q 0.38 TCGA-EB-A41A-01 9 139313576 139313576 C T PMPCA Intron 0.35 TCGA-EB-A41A-01 9 139972890 139972890 C T UAP1L1 Intron 0.18 TCGA-EB-A41A-01 9 140242630 140242630 G A EXD3 Missense_Mutation p.R631C 0.50 deleterious(0) probably_damaging(0.98) TCGA-EB-A41A-01 9 14720328 14720328 C T CER1 Silent p.G188G 0.81 TCGA-EB-A41A-01 9 14801837 14801837 G A FREM1 Silent p.S1169S 0.87 TCGA-EB-A41A-01 9 14806713 14806713 C T FREM1 Missense_Mutation p.E1074K 0.88 deleterious(0) probably_damaging(0.996) TCGA-EB-A41A-01 9 16436006 16436006 G A BNC2 Missense_Mutation p.S729L 0.75 deleterious(0.03) possibly_damaging(0.493) TCGA-EB-A41A-01 9 18680361 18680361 C T ADAMTSL1 Silent p.I396I 0.76 TCGA-EB-A41A-01 9 2039611 2039611 C T SMARCA2 Silent p.P167P 0.08 TCGA-EB-A41A-01 9 21077223 21077223 C T IFNB1 3'UTR 0.96 TCGA-EB-A41A-01 9 23701596 23701596 G A ELAVL2 Missense_Mutation p.S165L 0.74 deleterious(0) probably_damaging(0.995) TCGA-EB-A41A-01 9 26961971 26961971 C T IFT74 Silent p.A2A 0.67 TCGA-EB-A41A-01 9 27950530 27950530 C T LINGO2 Missense_Mutation p.R47Q 0.81 tolerated(0.1) probably_damaging(0.99) TCGA-EB-A41A-01 9 32542801 32542801 C A TOPORS Silent p.L574L 0.76 TCGA-EB-A41A-01 9 33385622 33385622 G A AQP7 Intron 0.13 TCGA-EB-A41A-01 9 33442038 33442038 C T AQP3 3'UTR 0.70 TCGA-EB-A41A-01 9 34405955 34405955 G A FAM219A Missense_Mutation p.A23V 0.79 deleterious_low_confidence(0.01) benign(0.325) TCGA-EB-A41A-01 9 35802771 35802771 C T NPR2 Missense_Mutation p.R620C 0.83 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 9 35812184 35812184 A G SPAG8 5'UTR 0.75 TCGA-EB-A41A-01 9 35853724 35853724 C T TMEM8B Missense_Mutation p.P436S 0.71 tolerated(0.17) benign(0.003) TCGA-EB-A41A-01 9 37740427 37740427 C T FRMPD1 Silent p.G634G 0.36 TCGA-EB-A41A-01 9 407018 407018 C T DOCK8 Missense_Mutation p.T1160I 0.73 tolerated(0.27) possibly_damaging(0.846) TCGA-EB-A41A-01 9 6595050 6595050 T A GLDC Missense_Mutation p.R409W 0.74 deleterious(0) possibly_damaging(0.796) TCGA-EB-A41A-01 9 71628617 71628617 G A PRKACG Missense_Mutation p.S131F 0.33 deleterious(0) probably_damaging(0.986) TCGA-EB-A41A-01 9 7165326 7165326 A T KDM4C Missense_Mutation p.Y957F 0.74 tolerated(1) probably_damaging(0.997) TCGA-EB-A41A-01 9 73167935 73167935 C T TRPM3 Silent p.S1121S 0.50 TCGA-EB-A41A-01 9 73376575 73376575 C T TRPM3 Missense_Mutation p.R405Q 0.31 tolerated(0.66) possibly_damaging(0.823) TCGA-EB-A41A-01 9 75524537 75524537 G A ALDH1A1 Silent p.L447L 0.41 TCGA-EB-A41A-01 9 77257587 77257587 C T RORB Missense_Mutation p.P165S 0.32 tolerated(0.05) possibly_damaging(0.54) TCGA-EB-A41A-01 9 77300631 77300631 A C RORB 3'UTR 0.36 TCGA-EB-A41A-01 9 77365615 77365615 C T TRPM6 Nonsense_Mutation p.W1674* 0.41 TCGA-EB-A41A-01 9 77377070 77377070 G A TRPM6 Missense_Mutation p.S1506L 0.42 tolerated_low_confidence(0.31) benign(0.001) TCGA-EB-A41A-01 9 77442781 77442781 C T TRPM6 Missense_Mutation p.D252N 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 9 77631222 77631222 G A C9orf41 Silent p.I184I 0.37 TCGA-EB-A41A-01 9 79325136 79325136 G A PRUNE2 Missense_Mutation p.S685L 0.36 tolerated(0.27) benign(0.252) TCGA-EB-A41A-01 9 8375977 8375977 G A PTPRD Silent p.T1540T 0.86 TCGA-EB-A41A-01 9 84302253 84302253 G A TLE1 Missense_Mutation p.H41Y 0.62 deleterious(0) possibly_damaging(0.794) TCGA-EB-A41A-01 9 84562561 84562561 C T RP11-383M4.6 Intron 0.47 TCGA-EB-A41A-01 9 84564780 84564780 C T RP11-383M4.6 Intron 0.40 TCGA-EB-A41A-01 9 84607252 84607252 C T SPATA31D1 Missense_Mutation p.H623Y 0.48 tolerated(0.1) benign(0.097) TCGA-EB-A41A-01 9 88937312 88937312 G A ZCCHC6 Nonsense_Mutation p.Q986* 0.51 TCGA-EB-A41A-01 9 95165765 95165765 C T OGN 5'UTR 0.45 TCGA-EB-A41A-01 9 96021271 96021271 C T WNK2 Missense_Mutation p.P814L 0.43 possibly_damaging(0.713) TCGA-EB-A41A-01 9 99266064 99266064 T A CDC14B Missense_Mutation p.I490F 0.38 deleterious(0.03) benign(0.092) TCGA-EB-A41A-01 X 101092490 101092490 G A NXF5 Silent p.L352L 0.85 TCGA-EB-A41A-01 X 101095986 101095986 A C NXF5 Splice_Site p.X160_splice 0.84 TCGA-EB-A41A-01 X 104464411 104464411 C T TEX13A Missense_Mutation p.G156E 0.90 tolerated(1) benign(0.006) TCGA-EB-A41A-01 X 105193573 105193573 G A NRK Missense_Mutation p.E1455K 0.90 tolerated(0.52) benign(0.006) TCGA-EB-A41A-01 X 107403095 107403095 C T COL4A6 Intron 0.86 TCGA-EB-A41A-01 X 111019630 111019630 C T TRPC5 Missense_Mutation p.D945N 0.81 deleterious_low_confidence(0.03) probably_damaging(0.956) TCGA-EB-A41A-01 X 111090573 111090573 G A TRPC5 Missense_Mutation p.S490L 0.89 deleterious(0.04) probably_damaging(0.914) TCGA-EB-A41A-01 X 123199776 123199776 G A STAG2 Silent p.K692K 0.77 TCGA-EB-A41A-01 X 123514403 123514403 C T TENM1 Missense_Mutation p.E2728K 0.89 tolerated(0.1) benign(0.087) TCGA-EB-A41A-01 X 129537820 129537820 T C RBMX2 Missense_Mutation p.F56L 0.91 deleterious(0.03) possibly_damaging(0.861) TCGA-EB-A41A-01 X 130218329 130218329 G A ARHGAP36 Silent p.A232A 0.96 TCGA-EB-A41A-01 X 130409123 130409123 C T IGSF1 Missense_Mutation p.E1113K 0.86 tolerated(0.31) benign(0.007) TCGA-EB-A41A-01 X 130417192 130417192 C T IGSF1 Missense_Mutation p.M238I 0.89 tolerated(0.3) benign(0.037) TCGA-EB-A41A-01 X 131212942 131212942 C T FRMD7 Missense_Mutation p.G368E 0.83 deleterious(0) probably_damaging(1) TCGA-EB-A41A-01 X 1321393 1321393 G A CRLF2 Missense_Mutation p.S121F 0.41 deleterious(0.02) benign(0.082) TCGA-EB-A41A-01 X 135047201 135047201 G A MMGT1 Silent p.L126L 0.90 TCGA-EB-A41A-01 X 135428366 135428366 G A GPR112 Missense_Mutation p.R834K 0.85 tolerated(0.28) benign(0.002) TCGA-EB-A41A-01 X 135431097 135431097 C T GPR112 Silent p.I1744I 0.82 TCGA-EB-A41A-01 X 135432503 135432503 C T GPR112 Missense_Mutation p.S2213L 0.23 deleterious(0.03) benign(0.008) TCGA-EB-A41A-01 X 13775886 13775886 C T OFD1 Silent p.L507L 0.94 TCGA-EB-A41A-01 X 138708465 138708465 A G MCF2 Silent p.L252L 0.80 TCGA-EB-A41A-01 X 140993368 140993368 G A MAGEC1 Missense_Mutation p.G60R 0.94 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EB-A41A-01 X 140995111 140995111 C T MAGEC1 Missense_Mutation p.P641S 0.83 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-EB-A41A-01 X 140995945 140995945 C T MAGEC1 Missense_Mutation p.L919F 0.84 deleterious(0) unknown(0) TCGA-EB-A41A-01 X 141290867 141290867 G A MAGEC2 Missense_Mutation p.P303S 0.85 deleterious(0) possibly_damaging(0.506) TCGA-EB-A41A-01 X 144337316 144337316 G A SPANXN1 Silent p.L67L 0.89 TCGA-EB-A41A-01 X 147743998 147743998 G A AFF2 Silent p.G250G 0.88 TCGA-EB-A41A-01 X 148797769 148797769 C T MAGEA11 Missense_Mutation p.S208L 0.86 tolerated(0.37) benign(0.047) TCGA-EB-A41A-01 X 151424252 151424252 C T GABRA3 Missense_Mutation p.M183I 0.83 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A41A-01 X 151514146 151514146 G A GABRA3 Missense_Mutation p.P57S 0.93 tolerated(0.24) benign(0.002) TCGA-EB-A41A-01 X 151870266 151870266 G A MAGEA6 3'UTR 0.83 TCGA-EB-A41A-01 X 151936014 151936014 C T MAGEA3 Silent p.G51G 0.66 TCGA-EB-A41A-01 X 152937017 152937017 G A PNCK Silent p.T258T 0.86 TCGA-EB-A41A-01 X 153133779 153133779 G A L1CAM Nonsense_Mutation p.Q561* 0.90 TCGA-EB-A41A-01 X 153133780 153133780 G A L1CAM Silent p.L560L 0.91 TCGA-EB-A41A-01 X 154159300 154159300 G A F8 Missense_Mutation p.S922F 0.86 deleterious(0.04) possibly_damaging(0.529) TCGA-EB-A41A-01 X 17040363 17040363 C T REPS2 Missense_Mutation p.S172F 0.33 tolerated(0.06) benign(0.14) TCGA-EB-A41A-01 X 18183173 18183173 C A BEND2 Nonsense_Mutation p.E786* 0.82 TCGA-EB-A41A-01 X 22117189 22117189 C T PHEX Silent p.I333I 0.85 TCGA-EB-A41A-01 X 23723131 23723131 T A ACOT9 Silent p.S362S 0.90 TCGA-EB-A41A-01 X 27998691 27998691 G A DCAF8L1 Missense_Mutation p.S254F 0.86 deleterious(0.01) possibly_damaging(0.707) TCGA-EB-A41A-01 X 27999275 27999275 G A DCAF8L1 Silent p.F59F 0.88 TCGA-EB-A41A-01 X 30577791 30577791 C T CXorf21 Missense_Mutation p.D228N 0.84 deleterious(0) probably_damaging(0.994) TCGA-EB-A41A-01 X 3229626 3229626 C T MXRA5 Silent p.L2206L 0.85 TCGA-EB-A41A-01 X 3240279 3240279 C T MXRA5 Silent p.R1149R 0.82 TCGA-EB-A41A-01 X 34148192 34148192 C T FAM47A Missense_Mutation p.G735E 0.05 deleterious(0) probably_damaging(0.998) TCGA-EB-A41A-01 X 34149499 34149499 C T FAM47A Silent p.G299G 0.79 TCGA-EB-A41A-01 X 34962748 34962748 C T FAM47B Silent p.G600G 0.87 TCGA-EB-A41A-01 X 37587034 37587034 G A XK Silent p.E218E 0.90 TCGA-EB-A41A-01 X 37665691 37665691 G A CYBB Missense_Mutation p.D456N 0.83 tolerated(0.11) possibly_damaging(0.457) TCGA-EB-A41A-01 X 39932456 39932456 T A BCOR Missense_Mutation p.T715S 0.83 deleterious(0.01) benign(0.129) TCGA-EB-A41A-01 X 47775939 47775939 C T ZNF81 Missense_Mutation p.H632Y 0.93 deleterious(0) probably_damaging(0.997) TCGA-EB-A41A-01 X 48763643 48763643 G A SLC35A2 Intron 0.70 TCGA-EB-A41A-01 X 48837717 48837717 G T GRIPAP1 Missense_Mutation p.L614I 0.75 probably_damaging(0.952) TCGA-EB-A41A-01 X 50136216 50136216 C T DGKK RNA 0.96 TCGA-EB-A41A-01 X 51150608 51150608 C T CXorf67 Missense_Mutation p.P247L 1.00 tolerated(0.4) possibly_damaging(0.451) TCGA-EB-A41A-01 X 55650469 55650469 C T FOXR2 Missense_Mutation p.P109S 0.17 tolerated(0.21) benign(0.176) TCGA-EB-A41A-01 X 55650834 55650834 G A FOXR2 Nonsense_Mutation p.W230* 0.86 TCGA-EB-A41A-01 X 69177016 69177016 G A EDA Intron 0.75 TCGA-EB-A41A-01 X 7171379 7171379 T C STS Splice_Site p.X51_splice 0.95 TCGA-EB-A41A-01 X 71830897 71830897 T A PHKA1 Missense_Mutation p.K836I 0.79 deleterious(0) benign(0.256) TCGA-EB-A41A-01 X 77913641 77913641 C T ZCCHC5 Missense_Mutation p.D93N 0.79 tolerated_low_confidence(0.14) benign(0.01) TCGA-EB-A41A-01 X 78618637 78618637 C T ITM2A Splice_Site p.X82_splice 0.83 TCGA-EB-A41A-01 X 84526787 84526787 G A ZNF711 Missense_Mutation p.E747K 0.84 deleterious(0.01) possibly_damaging(0.463) TCGA-EB-A41A-01 X 84561340 84561340 C T POF1B Splice_Site p.X389_splice 0.89 TCGA-EB-A41A-01 X 91090595 91090595 G A PCDH11X Missense_Mutation p.R31Q 0.90 tolerated(0.39) possibly_damaging(0.49) TCGA-EB-A41A-01 X 99551470 99551470 G A PCDH19 Silent p.T1084T 0.79 TCGA-EB-A41A-01 X 99551471 99551471 G A PCDH19 Missense_Mutation p.T1084I 0.80 deleterious_low_confidence(0.04) benign(0.01) TCGA-EB-A41A-01 X 99551716 99551716 G A PCDH19 Silent p.V1002V 0.86 TCGA-EB-A41A-01 Y 14869163 14869163 C T USP9Y Silent p.L488L 0.92 TCGA-EB-A41A-01 Y 3447449 3447449 G A TGIF2LY Missense_Mutation p.G55E 0.80 deleterious(0.02) benign(0.012) TCGA-EB-A41A-01 Y 3447612 3447612 C T TGIF2LY Silent p.L109L 0.85 TCGA-EB-A41A-01 Y 4924756 4924756 G A PCDH11Y 5'UTR 0.84 TCGA-EB-A41B-01 10 106019544 106019546 GTT - GSTO1 In_Frame_Del p.L119del 0.32 TCGA-EB-A41B-01 10 106160654 106160654 G A CCDC147 Missense_Mutation p.E678K 0.41 deleterious(0.03) benign(0.043) TCGA-EB-A41B-01 10 112839005 112839005 C T ADRA2A Silent p.S417S 0.36 TCGA-EB-A41B-01 10 115337888 115337888 G A HABP2 Silent p.G184G 0.32 TCGA-EB-A41B-01 10 123842403 123842403 G A TACC2 Missense_Mutation p.E130K 0.37 benign(0.105) TCGA-EB-A41B-01 10 123845639 123845639 G A TACC2 Missense_Mutation p.M1208I 0.44 benign(0.008) TCGA-EB-A41B-01 10 124361322 124361322 C T DMBT1 Missense_Mutation p.S1118F 0.33 deleterious(0.02) unknown(0) TCGA-EB-A41B-01 10 129899843 129899843 G A MKI67 Silent p.S3128S 0.35 TCGA-EB-A41B-01 10 133948659 133948659 G A JAKMIP3 Missense_Mutation p.E322K 0.45 deleterious(0.01) benign(0.206) TCGA-EB-A41B-01 10 15701046 15701046 G A ITGA8 Silent p.I300I 0.34 TCGA-EB-A41B-01 10 17276785 17276785 C T VIM Missense_Mutation p.L326F 0.43 tolerated(0.12) probably_damaging(0.983) TCGA-EB-A41B-01 10 24833228 24833228 G A KIAA1217 Missense_Mutation p.E1677K 0.34 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 10 24908899 24908899 G A ARHGAP21 Missense_Mutation p.S642L 0.46 deleterious(0.05) benign(0.005) TCGA-EB-A41B-01 10 25887462 25887462 G A GPR158 Silent p.K969K 0.37 TCGA-EB-A41B-01 10 26446413 26446413 C T MYO3A Missense_Mutation p.H990Y 0.37 deleterious(0) possibly_damaging(0.472) TCGA-EB-A41B-01 10 26463194 26463194 G A MYO3A Missense_Mutation p.R1334K 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-EB-A41B-01 10 26825136 26825136 G A APBB1IP Missense_Mutation p.G345E 0.40 tolerated(0.06) probably_damaging(1) TCGA-EB-A41B-01 10 46028729 46028729 G A MARCH8 5'UTR 0.47 TCGA-EB-A41B-01 10 48388731 48388731 G A RBP3 Missense_Mutation p.P716L 0.55 tolerated(0.33) possibly_damaging(0.713) TCGA-EB-A41B-01 10 50732569 50732569 T C ERCC6-PGBD3 Missense_Mutation p.T303A 0.38 tolerated_low_confidence(0.07) benign(0.064) TCGA-EB-A41B-01 10 50902484 50902484 C T C10orf53 Intron 0.24 TCGA-EB-A41B-01 10 61926409 61926409 G A ANK3 Missense_Mutation p.R852C 0.33 benign(0.033) TCGA-EB-A41B-01 10 61973199 61973199 G A ANK3 Nonsense_Mutation p.R323* 0.43 TCGA-EB-A41B-01 10 62023696 62023696 C T ANK3 Missense_Mutation p.G199E 0.34 probably_damaging(1) TCGA-EB-A41B-01 10 62023697 62023697 C T ANK3 Missense_Mutation p.G199R 0.36 probably_damaging(1) TCGA-EB-A41B-01 10 6527216 6527216 C T PRKCQ Missense_Mutation p.D306N 0.42 tolerated(0.13) benign(0.018) TCGA-EB-A41B-01 10 70776244 70776244 C T KIAA1279 3'UTR 0.67 TCGA-EB-A41B-01 10 71175796 71175796 C T TACR2 Missense_Mutation p.S95N 0.41 deleterious(0.02) possibly_damaging(0.895) TCGA-EB-A41B-01 10 74768012 74768012 G A P4HA1 Nonsense_Mutation p.R525* 0.28 TCGA-EB-A41B-01 10 75542922 75542922 C T CHCHD1 Missense_Mutation p.P112S 0.52 deleterious(0.03) probably_damaging(1) TCGA-EB-A41B-01 10 96447961 96447961 G A CYP2C18 Silent p.G137G 0.51 TCGA-EB-A41B-01 10 96466541 96466541 G A CYP2C18 Missense_Mutation p.V215I 0.44 tolerated(0.35) benign(0.008) TCGA-EB-A41B-01 10 96827404 96827404 C T CYP2C8 Missense_Mutation p.M71I 0.41 tolerated(0.39) benign(0.041) TCGA-EB-A41B-01 10 98408561 98408561 C T PIK3AP1 Missense_Mutation p.G347E 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 10 99683141 99683141 G A CRTAC1 Silent p.T146T 0.51 TCGA-EB-A41B-01 11 102713279 102713279 C T MMP3 Missense_Mutation p.D128N 0.70 tolerated(0.35) benign(0.002) TCGA-EB-A41B-01 11 118209899 118209899 C T CD3D Missense_Mutation p.G165E 0.75 tolerated(0.5) benign(0.083) TCGA-EB-A41B-01 11 121384980 121384980 G A SORL1 Silent p.E387E 0.72 TCGA-EB-A41B-01 11 121448080 121448080 G A SORL1 Missense_Mutation p.R1184K 0.61 tolerated(0.28) probably_damaging(0.989) TCGA-EB-A41B-01 11 124440328 124440328 C T OR8A1 Missense_Mutation p.L122F 0.68 deleterious(0.03) possibly_damaging(0.846) TCGA-EB-A41B-01 11 17793787 17793787 G A KCNC1 Silent p.T382T 0.09 TCGA-EB-A41B-01 11 26463542 26463542 C T ANO3 Nonsense_Mutation p.Q42* 0.46 TCGA-EB-A41B-01 11 30900213 30900213 C T DCDC1 Missense_Mutation p.R1757Q 0.35 deleterious(0.03) benign(0.417) TCGA-EB-A41B-01 11 31327180 31327180 G A DCDC1 Missense_Mutation p.P246S 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 11 4510137 4510137 C T OR52K1 Missense_Mutation p.P3S 0.44 tolerated(0.71) benign(0.003) TCGA-EB-A41B-01 11 4661102 4661102 G A OR51D1 Missense_Mutation p.G28S 0.47 deleterious(0.01) possibly_damaging(0.751) TCGA-EB-A41B-01 11 49168236 49168236 C T FOLH1 3'UTR 0.50 TCGA-EB-A41B-01 11 4944756 4944756 G A OR51G1 Missense_Mutation p.R272C 0.40 deleterious(0.02) possibly_damaging(0.717) TCGA-EB-A41B-01 11 51515396 51515396 G A OR4C46 Missense_Mutation p.G39R 0.42 deleterious_low_confidence(0.03) benign(0.327) TCGA-EB-A41B-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.40 deleterious(0.02) benign(0.046) TCGA-EB-A41B-01 11 55062994 55062994 C T TRIM51HP RNA 0.42 TCGA-EB-A41B-01 11 55136040 55136040 G A OR4A15 Missense_Mutation p.M227I 0.41 deleterious_low_confidence(0.04) benign(0.019) TCGA-EB-A41B-01 11 5529653 5529653 C T UBQLN3 Missense_Mutation p.R379K 0.40 deleterious(0.04) benign(0.116) TCGA-EB-A41B-01 11 55682049 55682049 C T OR5W2 Missense_Mutation p.E4K 0.37 tolerated(0.52) benign(0.007) TCGA-EB-A41B-01 11 55703593 55703593 G A OR5I1 Missense_Mutation p.S95F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EB-A41B-01 11 56113787 56113787 C T OR8K1 Silent p.F91F 0.38 TCGA-EB-A41B-01 11 56431785 56431785 C T OR5AR1 Silent p.F208F 0.44 TCGA-EB-A41B-01 11 56468355 56468355 C T OR9G1 Silent p.S164S 0.17 TCGA-EB-A41B-01 11 56949344 56949344 G A LRRC55 5'UTR 0.56 TCGA-EB-A41B-01 11 57004104 57004104 G A APLNR Silent p.F125F 0.50 TCGA-EB-A41B-01 11 57070044 57070044 G A TNKS1BP1 Silent p.T1524T 0.56 TCGA-EB-A41B-01 11 57070045 57070045 G A TNKS1BP1 Missense_Mutation p.T1524I 0.58 deleterious(0.02) possibly_damaging(0.663) TCGA-EB-A41B-01 11 5731012 5731012 C T TRIM22 3'UTR 0.59 TCGA-EB-A41B-01 11 58391524 58391524 G A CNTF Silent p.L44L 0.67 TCGA-EB-A41B-01 11 5841694 5841694 G A OR52N2 Silent p.G43G 0.44 TCGA-EB-A41B-01 11 60707110 60707110 C T SLC15A3 Missense_Mutation p.G426E 0.83 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 11 66291262 66291262 C T BBS1 Missense_Mutation p.S340F 0.13 tolerated(0.2) benign(0.404) TCGA-EB-A41B-01 11 66291263 66291263 C T BBS1 Silent p.S340S 0.13 TCGA-EB-A41B-01 11 68664015 68664015 G A MRPL21 Missense_Mutation p.L122F 0.12 tolerated(0.08) benign(0.361) TCGA-EB-A41B-01 11 68664016 68664016 G A MRPL21 Silent p.D121D 0.12 TCGA-EB-A41B-01 11 68675694 68675694 C T IGHMBP2 Missense_Mutation p.S113L 0.81 tolerated(0.58) benign(0.006) TCGA-EB-A41B-01 11 72535155 72535155 A G ATG16L2 Missense_Mutation p.K292R 0.14 tolerated(0.26) benign(0.156) TCGA-EB-A41B-01 11 77734242 77734242 G A KCTD14 Silent p.T18T 0.12 TCGA-EB-A41B-01 11 7982172 7982172 C T NLRP10 Silent p.T329T 0.38 TCGA-EB-A41B-01 11 83344262 83344262 G A DLG2 Silent p.L644L 0.13 TCGA-EB-A41B-01 11 85447645 85447645 G A SYTL2 Missense_Mutation p.P161L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41B-01 11 89774444 89774444 G A TRIM49C Missense_Mutation p.R362Q 0.31 tolerated(0.11) benign(0.017) TCGA-EB-A41B-01 11 89868802 89868802 C T NAALAD2 Missense_Mutation p.S53F 0.41 deleterious(0.01) possibly_damaging(0.565) TCGA-EB-A41B-01 11 92257826 92257826 G A FAT3 Missense_Mutation p.D1107N 0.50 probably_damaging(1) TCGA-EB-A41B-01 11 92573830 92573830 G A FAT3 Missense_Mutation p.E3491K 0.32 benign(0.377) TCGA-EB-A41B-01 11 94917562 94917562 G A SESN3 Intron 0.42 TCGA-EB-A41B-01 12 108013926 108013926 C T BTBD11 Silent p.I872I 0.41 TCGA-EB-A41B-01 12 113334680 113334680 C T RPH3A 3'UTR 0.25 TCGA-EB-A41B-01 12 117964916 117964916 C T KSR2 Missense_Mutation p.G604E 0.39 tolerated(0.49) benign(0.003) TCGA-EB-A41B-01 12 119916966 119916966 C T CCDC60 Missense_Mutation p.H137Y 0.42 tolerated(0.56) benign(0.02) TCGA-EB-A41B-01 12 123201348 123201348 G T HCAR3 5'UTR 0.52 TCGA-EB-A41B-01 12 123424809 123424809 G A ABCB9 Missense_Mutation p.P531L 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 12 12966263 12966263 C T DDX47 5'Flank 0.47 TCGA-EB-A41B-01 12 131593385 131593385 G A GPR133 Silent p.E668E 0.40 TCGA-EB-A41B-01 12 132395326 132395326 C T ULK1 Missense_Mutation p.S310F 0.45 deleterious(0.04) probably_damaging(0.996) TCGA-EB-A41B-01 12 133721109 133721109 C T CTD-2140B24.4 Missense_Mutation p.R11W 0.42 deleterious(0.01) unknown(0) TCGA-EB-A41B-01 12 18234107 18234107 C T RERGL 3'UTR 0.47 TCGA-EB-A41B-01 12 247544 247544 C T IQSEC3 Missense_Mutation p.R339C 0.52 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 12 27571035 27571035 G C ARNTL2 Missense_Mutation p.E560D 0.38 tolerated(0.05) probably_damaging(0.997) TCGA-EB-A41B-01 12 2764351 2764351 C T CACNA1C Silent p.I1441I 0.47 TCGA-EB-A41B-01 12 2786342 2786342 G A CACNA1C Silent p.Q1685Q 0.44 TCGA-EB-A41B-01 12 2786857 2786857 G A CACNA1C Intron 0.58 TCGA-EB-A41B-01 12 33560122 33560122 C T SYT10 Missense_Mutation p.E227K 0.35 tolerated(0.26) benign(0.073) TCGA-EB-A41B-01 12 51853752 51853752 G A SLC4A8 Missense_Mutation p.M291I 0.37 deleterious(0.02) benign(0.118) TCGA-EB-A41B-01 12 51865128 51865128 C T SLC4A8 Silent p.F572F 0.43 TCGA-EB-A41B-01 12 52284716 52284716 C T ANKRD33 Missense_Mutation p.P329L 0.47 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 12 55524412 55524412 C T OR9K2 Missense_Mutation p.P287L 0.41 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 12 56211541 56211541 C T RP11-762I7.5 Intron 0.28 TCGA-EB-A41B-01 12 65460504 65460504 G A WIF1 Missense_Mutation p.P216L 0.35 deleterious(0) possibly_damaging(0.525) TCGA-EB-A41B-01 12 6646281 6646281 G A GAPDH Silent p.G114G 0.42 TCGA-EB-A41B-01 12 66638416 66638416 C T IRAK3 Silent p.I346I 0.46 TCGA-EB-A41B-01 12 6777167 6777167 G A ZNF384 Nonsense_Mutation p.Q483* 0.46 TCGA-EB-A41B-01 12 6976778 6976778 C T TPI1 Silent p.N53N 0.15 TCGA-EB-A41B-01 12 72893278 72893278 G A TRHDE Missense_Mutation p.E484K 0.29 tolerated(1) benign(0.124) TCGA-EB-A41B-01 12 75444834 75444834 G A KCNC2 Silent p.I317I 0.34 TCGA-EB-A41B-01 12 79747381 79747381 G A SYT1 Missense_Mutation p.D304N 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-EB-A41B-01 12 81675205 81675205 C T PPFIA2 Missense_Mutation p.A1015T 0.31 deleterious(0.01) probably_damaging(0.939) TCGA-EB-A41B-01 12 82752021 82752021 G A CCDC59 Silent p.F45F 0.34 TCGA-EB-A41B-01 12 86373133 86373133 C T MGAT4C Silent p.R457R 0.41 TCGA-EB-A41B-01 12 8673834 8673834 G A CLEC4D Silent p.R205R 0.40 TCGA-EB-A41B-01 12 994460 994460 C T WNK1 Missense_Mutation p.S1497L 0.41 tolerated_low_confidence(0.38) benign(0.009) TCGA-EB-A41B-01 13 110802669 110802669 G A COL4A1 3'UTR 0.25 TCGA-EB-A41B-01 13 29601028 29601028 G A MTUS2 Silent p.K741K 0.20 TCGA-EB-A41B-01 13 36241532 36241532 C T NBEA Missense_Mutation p.T2808I 0.73 deleterious(0) possibly_damaging(0.856) TCGA-EB-A41B-01 13 42460114 42460114 G A VWA8 Missense_Mutation p.S306F 0.73 tolerated(0.07) benign(0.008) TCGA-EB-A41B-01 14 106236653 106236653 G A IGHG3 Missense_Mutation p.P138L 0.49 tolerated(0.3) benign(0) TCGA-EB-A41B-01 14 31353845 31353845 G A COCH Missense_Mutation p.G239E 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 14 52481856 52481856 C T NID2 Missense_Mutation p.G1056R 0.14 deleterious(0) probably_damaging(0.982) TCGA-EB-A41B-01 14 55434047 55434047 G A WDHD1 Missense_Mutation p.S710F 0.40 deleterious(0) benign(0.396) TCGA-EB-A41B-01 14 65246467 65246467 G A SPTB Silent p.I1483I 0.77 TCGA-EB-A41B-01 14 76045416 76045416 C T FLVCR2 Missense_Mutation p.S34L 0.74 deleterious_low_confidence(0.01) benign(0.001) TCGA-EB-A41B-01 14 88477824 88477824 G A GPR65 Silent p.R211R 0.70 TCGA-EB-A41B-01 14 89647069 89647069 G A FOXN3 Missense_Mutation p.P298L 0.67 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A41B-01 15 20496740 20496740 C T CHEK2P2 RNA 0.09 TCGA-EB-A41B-01 15 20588632 20588632 C T HERC2P3 RNA 0.12 TCGA-EB-A41B-01 15 22332687 22332687 C T RP11-69H14.6 RNA 0.18 TCGA-EB-A41B-01 15 24921625 24921625 G A NPAP1 Missense_Mutation p.S204N 0.46 tolerated(0.07) benign(0.331) TCGA-EB-A41B-01 15 26806258 26806258 G A GABRB3 Missense_Mutation p.P301S 0.33 tolerated(0.89) probably_damaging(1) TCGA-EB-A41B-01 15 30053379 30053379 G A TJP1 Missense_Mutation p.H325Y 0.29 tolerated(0.59) benign(0.002) TCGA-EB-A41B-01 15 34649668 34649668 G A NUTM1 Silent p.R1125R 0.36 TCGA-EB-A41B-01 15 41195002 41195002 C T VPS18 Silent p.F795F 0.30 TCGA-EB-A41B-01 15 41770814 41770814 C T RTF1 Silent p.I603I 0.37 TCGA-EB-A41B-01 15 55919318 55919318 C T PRTG Missense_Mutation p.G939R 0.39 deleterious(0) probably_damaging(0.91) TCGA-EB-A41B-01 15 59323751 59323751 C T RNF111 Nonsense_Mutation p.R244* 0.47 TCGA-EB-A41B-01 15 64737208 64737208 C T TRIP4 Missense_Mutation p.P527S 0.51 deleterious(0.03) possibly_damaging(0.856) TCGA-EB-A41B-01 15 67713640 67713640 G A IQCH Missense_Mutation p.E744K 0.55 deleterious(0) possibly_damaging(0.892) TCGA-EB-A41B-01 15 74610954 74610954 C T CCDC33 Intron 0.43 TCGA-EB-A41B-01 15 79339322 79339322 C T RASGRF1 Missense_Mutation p.G215D 0.40 deleterious(0) probably_damaging(0.961) TCGA-EB-A41B-01 16 1271968 1271968 C T TPSG1 Silent p.V262V 0.42 TCGA-EB-A41B-01 16 1545593 1545593 G A TELO2 Silent p.R194R 0.41 TCGA-EB-A41B-01 16 16255397 16255397 G A ABCC6 Silent p.L1177L 0.40 TCGA-EB-A41B-01 16 20043449 20043449 C T GPR139 Missense_Mutation p.G224R 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 16 20376823 20376823 G A PDILT Nonsense_Mutation p.Q386* 0.39 TCGA-EB-A41B-01 16 2125865 2125865 A C TSC2 Missense_Mutation p.I871L 0.33 tolerated(0.06) benign(0.145) TCGA-EB-A41B-01 16 21739600 21739600 G A OTOA Missense_Mutation p.M685I 0.41 tolerated(0.18) benign(0.001) TCGA-EB-A41B-01 16 24226084 24226084 G A PRKCB Missense_Mutation p.E657K 0.34 tolerated(0.75) benign(0.002) TCGA-EB-A41B-01 16 28892329 28892329 G A ATP2A1 Missense_Mutation p.G105R 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 16 31012260 31012260 G A STX1B Missense_Mutation p.S90F 0.40 deleterious(0.01) possibly_damaging(0.678) TCGA-EB-A41B-01 16 32077472 32077472 C T IGHV3OR16-9 Silent p.F29F 0.22 TCGA-EB-A41B-01 16 4412726 4412726 G A CORO7 Missense_Mutation p.S430F 0.40 deleterious(0.02) probably_damaging(0.927) TCGA-EB-A41B-01 16 51175082 51175082 G A SALL1 Missense_Mutation p.P351S 0.73 tolerated(0.2) benign(0.038) TCGA-EB-A41B-01 16 51175496 51175496 C T SALL1 Missense_Mutation p.E213K 0.74 tolerated(0.49) benign(0.04) TCGA-EB-A41B-01 16 57113043 57113043 C T NLRC5 Silent p.I1721I 0.75 TCGA-EB-A41B-01 16 68104927 68104927 C T DUS2 Silent p.A242A 0.74 TCGA-EB-A41B-01 16 68104928 68104928 C T DUS2 Nonsense_Mutation p.R243* 0.74 TCGA-EB-A41B-01 16 71061540 71061540 C T HYDIN Missense_Mutation p.D1003N 0.71 probably_damaging(0.981) TCGA-EB-A41B-01 16 71318599 71318599 G A CMTR2 Nonsense_Mutation p.Q409* 0.68 TCGA-EB-A41B-01 16 71674572 71674572 G A MARVELD3 Missense_Mutation p.R292Q 0.73 deleterious(0) benign(0.009) TCGA-EB-A41B-01 16 84691051 84691051 C T KLHL36 Missense_Mutation p.A213V 0.71 tolerated(0.3) benign(0.024) TCGA-EB-A41B-01 16 84691052 84691052 C T KLHL36 Silent p.A213A 0.71 TCGA-EB-A41B-01 16 85100903 85100903 G A KIAA0513 Missense_Mutation p.E76K 0.74 tolerated(0.34) benign(0.231) TCGA-EB-A41B-01 16 9923364 9923364 G A GRIN2A Silent p.F641F 0.36 TCGA-EB-A41B-01 17 10307704 10307704 C T MYH8 Silent p.E877E 0.79 TCGA-EB-A41B-01 17 11556311 11556311 C T DNAH9 Missense_Mutation p.L863F 0.35 possibly_damaging(0.823) TCGA-EB-A41B-01 17 12666389 12666389 G A MYOCD Splice_Site p.X797_splice 0.72 TCGA-EB-A41B-01 17 18044116 18044116 C T MYO15A Silent p.F1792F 0.70 TCGA-EB-A41B-01 17 28890411 28890411 C T TBC1D29 Missense_Mutation p.R141W 0.38 deleterious_low_confidence(0.03) benign(0.001) TCGA-EB-A41B-01 17 3594962 3594962 G A P2RX5 Silent p.V88V 0.72 TCGA-EB-A41B-01 17 37687033 37687033 C T CDK12 Missense_Mutation p.P1313S 0.31 benign(0.012) TCGA-EB-A41B-01 17 39775896 39775896 C T KRT17 Missense_Mutation p.D417N 0.47 tolerated(0.11) benign(0.134) TCGA-EB-A41B-01 17 41598905 41598905 C T DHX8 Missense_Mutation p.R1079C 0.31 deleterious(0) possibly_damaging(0.896) TCGA-EB-A41B-01 17 44414708 44414708 G A LRRC37A Missense_Mutation p.E1636K 0.17 deleterious(0.03) benign(0.012) TCGA-EB-A41B-01 17 51900988 51900988 G A KIF2B Silent p.L198L 0.32 TCGA-EB-A41B-01 17 55478757 55478757 G A MSI2 Silent p.K110K 0.46 TCGA-EB-A41B-01 17 56382920 56382920 G A BZRAP1 Missense_Mutation p.S1781F 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 17 59147340 59147342 AAG - BCAS3 Intron 0.14 TCGA-EB-A41B-01 17 62036697 62036697 G A SCN4A Silent p.I649I 0.50 TCGA-EB-A41B-01 17 72915624 72915624 C T USH1G Missense_Mutation p.R436Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 17 73725444 73725444 G A ITGB4 Missense_Mutation p.G222E 0.37 tolerated(0.18) benign(0.068) TCGA-EB-A41B-01 17 75212564 75212564 C T SEC14L1 Intron 0.54 TCGA-EB-A41B-01 17 77040030 77040030 C T C1QTNF1 Intron 0.30 TCGA-EB-A41B-01 17 79171640 79171640 T A AZI1 Nonsense_Mutation p.K507* 0.53 TCGA-EB-A41B-01 17 8701183 8701183 G A MFSD6L Missense_Mutation p.P419L 0.71 tolerated(0.81) benign(0.009) TCGA-EB-A41B-01 18 22057601 22057601 C T HRH4 3'UTR 0.71 TCGA-EB-A41B-01 18 24496954 24496954 G A CHST9 Missense_Mutation p.H201Y 0.40 deleterious(0.01) possibly_damaging(0.876) TCGA-EB-A41B-01 18 28714577 28714577 C T DSC1 Missense_Mutation p.D612N 0.33 tolerated(0.09) possibly_damaging(0.737) TCGA-EB-A41B-01 18 28991308 28991308 G A DSG4 Missense_Mutation p.G770E 0.38 tolerated(0.06) benign(0.371) TCGA-EB-A41B-01 18 29102104 29102104 G A DSG2 Silent p.S194S 0.33 TCGA-EB-A41B-01 18 29111185 29111185 A T DSG2 Missense_Mutation p.D417V 0.46 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 18 30092668 30092668 G A WBP11P1 RNA 0.34 TCGA-EB-A41B-01 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.47 benign(0.006) TCGA-EB-A41B-01 18 51056987 51056987 G A DCC Missense_Mutation p.M1436I 0.47 deleterious(0) probably_damaging(0.981) TCGA-EB-A41B-01 18 6243355 6243355 G A L3MBTL4 Missense_Mutation p.S133F 0.55 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 18 71815885 71815885 C T TIMM21 5'UTR 0.24 TCGA-EB-A41B-01 18 7231273 7231273 G A LRRC30 Missense_Mutation p.R46Q 0.45 tolerated(0.44) benign(0.008) TCGA-EB-A41B-01 19 14034157 14034157 C T CC2D1A Silent p.A551A 0.46 TCGA-EB-A41B-01 19 15538162 15538162 G A WIZ Missense_Mutation p.R238W 0.35 deleterious(0) possibly_damaging(0.711) TCGA-EB-A41B-01 19 15658923 15658923 G A CYP4F22 Missense_Mutation p.D381N 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 19 16000359 16000359 G A CYP4F2 Silent p.H264H 0.45 TCGA-EB-A41B-01 19 17049247 17049247 C T CPAMD8 Missense_Mutation p.V982I 0.32 tolerated(0.83) benign(0.007) TCGA-EB-A41B-01 19 17339746 17339746 G A OCEL1 3'UTR 0.40 TCGA-EB-A41B-01 19 2876264 2876264 A C ZNF556 Silent p.R102R 0.40 TCGA-EB-A41B-01 19 35775910 35775910 C T HAMP Missense_Mutation p.H74Y 0.32 tolerated(1) benign(0.009) TCGA-EB-A41B-01 19 36349665 36349665 C T KIRREL2 Missense_Mutation p.P141S 0.35 tolerated(0.12) probably_damaging(0.942) TCGA-EB-A41B-01 19 3905454 3905454 C T ATCAY Silent p.F53F 0.40 TCGA-EB-A41B-01 19 4217291 4217291 C T ANKRD24 Missense_Mutation p.P712S 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-EB-A41B-01 19 43433624 43433624 G A PSG7 Missense_Mutation p.R227C 0.40 deleterious(0.03) possibly_damaging(0.828) TCGA-EB-A41B-01 19 51462326 51462326 G A KLK6 3'UTR 0.47 TCGA-EB-A41B-01 19 51995067 51995067 G A SIGLEC12 Missense_Mutation p.S539F 0.33 tolerated(0.33) possibly_damaging(0.898) TCGA-EB-A41B-01 19 53301729 53301729 G A ZNF28 3'UTR 0.54 TCGA-EB-A41B-01 19 54209512 54209512 C T MIR526A1 RNA 0.34 TCGA-EB-A41B-01 19 54264410 54264410 G A MIR516A2 RNA 0.35 TCGA-EB-A41B-01 19 54745696 54745696 C T LILRA6 Silent p.G138G 0.27 TCGA-EB-A41B-01 19 54754629 54754629 G A LILRB5 3'UTR 0.40 TCGA-EB-A41B-01 19 54803168 54803168 G A LILRA3 Missense_Mutation p.S170F 0.41 deleterious(0) probably_damaging(0.984) TCGA-EB-A41B-01 19 55451765 55451765 C T NLRP7 Missense_Mutation p.G141E 0.37 tolerated(0.2) benign(0.134) TCGA-EB-A41B-01 19 56319229 56319229 G A NLRP11 Missense_Mutation p.R665C 0.38 deleterious(0) possibly_damaging(0.858) TCGA-EB-A41B-01 19 56363626 56363626 C T NLRP4 Silent p.I60I 0.40 TCGA-EB-A41B-01 19 57133861 57133861 C T ZNF71 Silent p.I402I 0.48 TCGA-EB-A41B-01 19 7675788 7675788 C T CAMSAP3 Silent p.A367A 0.52 TCGA-EB-A41B-01 19 7833749 7833749 G A CLEC4M Missense_Mutation p.E359K 0.28 deleterious(0) probably_damaging(0.993) TCGA-EB-A41B-01 19 8807924 8807924 C T ACTL9 Silent p.R376R 0.49 TCGA-EB-A41B-01 19 9058260 9058260 G A MUC16 Missense_Mutation p.S9729F 0.42 unknown(0) TCGA-EB-A41B-01 19 9067908 9067908 G A MUC16 Missense_Mutation p.S6513F 0.38 unknown(0) TCGA-EB-A41B-01 19 9089612 9089612 C T MUC16 Missense_Mutation p.D735N 0.47 unknown(0) TCGA-EB-A41B-01 19 9868696 9868696 G A ZNF846 Missense_Mutation p.L353F 0.38 deleterious(0) probably_damaging(0.99) TCGA-EB-A41B-01 1 111667448 111667448 C T DRAM2 Silent p.E85E 0.44 TCGA-EB-A41B-01 1 111966211 111966211 C T OVGP1 Missense_Mutation p.R146K 0.82 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A41B-01 1 118530493 118530493 G A SPAG17 Missense_Mutation p.S1878F 0.89 deleterious(0.02) benign(0.435) TCGA-EB-A41B-01 1 119925542 119925542 C T HAO2 Missense_Mutation p.R46C 0.89 deleterious(0.03) possibly_damaging(0.763) TCGA-EB-A41B-01 1 1275124 1275124 G A DVL1 Silent p.S326S 0.95 TCGA-EB-A41B-01 1 14107155 14107155 C T PRDM2 Silent p.S955S 0.76 TCGA-EB-A41B-01 1 144952024 144952024 C T PDE4DIP Intron 0.35 TCGA-EB-A41B-01 1 153744415 153744415 A T INTS3 Missense_Mutation p.N899I 0.93 deleterious(0.02) benign(0.347) TCGA-EB-A41B-01 1 155148412 155148412 T G TRIM46 Missense_Mutation p.V125G 0.91 deleterious(0) benign(0.003) TCGA-EB-A41B-01 1 156812212 156812212 C T INSRR Missense_Mutation p.R1072Q 0.90 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 1 157068549 157068549 C T ETV3L Silent p.G145G 0.92 TCGA-EB-A41B-01 1 159169599 159169599 G A CADM3 Silent p.V371V 0.90 TCGA-EB-A41B-01 1 173594003 173594003 G A ANKRD45 Missense_Mutation p.S218F 0.82 deleterious(0) benign(0.256) TCGA-EB-A41B-01 1 176054928 176054928 C A RFWD2 Missense_Mutation p.R375S 0.43 deleterious(0.01) benign(0.408) TCGA-EB-A41B-01 1 176563922 176563922 C T PAPPA2 Silent p.P394P 0.85 TCGA-EB-A41B-01 1 207236005 207236005 C T PFKFB2 Silent p.S84S 0.86 TCGA-EB-A41B-01 1 223284112 223284112 G A TLR5 Silent p.I754I 0.62 TCGA-EB-A41B-01 1 229729998 229729998 G A TAF5L 3'UTR 0.54 TCGA-EB-A41B-01 1 231374566 231374566 G A C1orf131 Intron 0.71 TCGA-EB-A41B-01 1 233515125 233515125 C T MLK4 Silent p.P791P 0.75 TCGA-EB-A41B-01 1 240370649 240370649 C T FMN2 Missense_Mutation p.S846F 0.86 unknown(0) TCGA-EB-A41B-01 1 247695113 247695113 C T OR2C3 Missense_Mutation p.G234E 0.91 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 1 247902152 247902152 C T OR14K1 Missense_Mutation p.S79F 0.92 tolerated(0.13) benign(0.012) TCGA-EB-A41B-01 1 248366863 248366863 C T OR2M3 Missense_Mutation p.S165F 0.90 deleterious(0.02) benign(0.185) TCGA-EB-A41B-01 1 248436359 248436359 G A OR2T33 Missense_Mutation p.A253V 0.73 deleterious(0.02) possibly_damaging(0.794) TCGA-EB-A41B-01 1 248813978 248813978 C T OR2T27 Missense_Mutation p.D70N 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 1 34102044 34102044 C T CSMD2 Missense_Mutation p.E1589K 0.80 tolerated(0.98) benign(0.007) TCGA-EB-A41B-01 1 37270541 37270541 G A GRIK3 Intron 0.88 TCGA-EB-A41B-01 1 47264800 47264800 G A CYP4B1 Nonsense_Mutation p.W16* 0.75 TCGA-EB-A41B-01 1 47650754 47650754 C T PDZK1IP1 Missense_Mutation p.M64I 0.91 tolerated(0.2) benign(0.033) TCGA-EB-A41B-01 1 57192176 57192176 G A C1orf168 Missense_Mutation p.S625L 0.87 deleterious(0.05) possibly_damaging(0.795) TCGA-EB-A41B-01 1 60019826 60019826 G A FGGY Missense_Mutation p.G277D 0.88 tolerated(0.14) benign(0.008) TCGA-EB-A41B-01 1 62916296 62916298 CTT - USP1 In_Frame_Del p.L669del 0.88 TCGA-EB-A41B-01 1 74670874 74670874 A G FPGT Silent p.L381L 0.93 TCGA-EB-A41B-01 1 75037176 75037176 C T C1orf173 Silent p.E1406E 0.85 TCGA-EB-A41B-01 1 75072338 75072338 C T C1orf173 Missense_Mutation p.G479E 0.80 tolerated(0.29) benign(0.126) TCGA-EB-A41B-01 1 78024421 78024422 AT - AK5 3'UTR 0.43 TCGA-EB-A41B-01 1 82416126 82416126 G A LPHN2 Silent p.R484R 0.37 TCGA-EB-A41B-01 1 85418182 85418182 G A MCOLN2 Silent p.S199S 0.94 TCGA-EB-A41B-01 20 21492547 21492547 C T NKX2-2 3'UTR 0.42 TCGA-EB-A41B-01 20 23545541 23545541 G A CST9L 3'UTR 0.39 TCGA-EB-A41B-01 20 24524126 24524126 G A SYNDIG1 Silent p.G131G 0.43 TCGA-EB-A41B-01 20 25456957 25456957 G A NINL Silent p.T990T 0.42 TCGA-EB-A41B-01 20 3065310 3065310 G A AVP Missense_Mutation p.T4I 0.40 tolerated(0.15) benign(0.025) TCGA-EB-A41B-01 20 34240839 34240839 G A RBM12 Silent p.P802P 0.41 TCGA-EB-A41B-01 20 3682164 3682164 G A SIGLEC1 Silent p.I451I 0.41 TCGA-EB-A41B-01 20 41306568 41306568 C T PTPRT Missense_Mutation p.R364Q 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 20 43929760 43929760 C T MATN4 Missense_Mutation p.D291N 0.44 benign(0.248) TCGA-EB-A41B-01 20 44641100 44641100 C T MMP9 Silent p.F403F 0.41 TCGA-EB-A41B-01 20 45194949 45194949 G A SLC13A3 Silent p.I471I 0.44 TCGA-EB-A41B-01 20 49214124 49214124 C T FAM65C Missense_Mutation p.G591S 0.36 tolerated(0.62) benign(0.003) TCGA-EB-A41B-01 20 5294904 5294904 C T PROKR2 Missense_Mutation p.D38N 0.47 tolerated(0.3) benign(0.003) TCGA-EB-A41B-01 20 56137858 56137858 G A PCK1 Silent p.R171R 0.41 TCGA-EB-A41B-01 20 57570805 57570806 CT - CTSZ Frame_Shift_Del p.G271Lfs*10 0.23 TCGA-EB-A41B-01 20 57598943 57598943 A T TUBB1 Missense_Mutation p.K154M 0.44 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-EB-A41B-01 20 5903280 5903280 G A CHGB Missense_Mutation p.D164N 0.53 tolerated(0.22) benign(0.009) TCGA-EB-A41B-01 20 6100193 6100193 T G FERMT1 Silent p.S3S 0.45 TCGA-EB-A41B-01 21 11047502 11047502 T C BAGE2 RNA 0.09 TCGA-EB-A41B-01 21 15537558 15537558 G A LIPI Missense_Mutation p.S317L 0.46 deleterious(0.02) possibly_damaging(0.58) TCGA-EB-A41B-01 21 31802855 31802855 C T KRTAP13-4 Missense_Mutation p.R88W 0.41 deleterious(0.01) possibly_damaging(0.773) TCGA-EB-A41B-01 21 41455851 41455851 C T DSCAM Silent p.G1405G 0.47 TCGA-EB-A41B-01 21 43796670 43796670 C T TMPRSS3 Missense_Mutation p.G392S 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 21 45679424 45679424 G A DNMT3L Silent p.F80F 0.42 TCGA-EB-A41B-01 22 36960648 36960648 G A CACNG2 Missense_Mutation p.S241L 0.79 deleterious(0) probably_damaging(0.921) TCGA-EB-A41B-01 22 38271929 38271929 C T EIF3L Nonsense_Mutation p.Q330* 0.74 TCGA-EB-A41B-01 22 41075535 41075535 C T MCHR1 Missense_Mutation p.P29L 0.27 deleterious_low_confidence(0.01) benign(0.025) TCGA-EB-A41B-01 22 41075536 41075536 C T MCHR1 Silent p.P29P 0.26 TCGA-EB-A41B-01 22 50307148 50307148 G A ALG12 Silent p.F60F 0.30 TCGA-EB-A41B-01 22 50615729 50615729 C T PANX2 Silent p.I196I 0.75 TCGA-EB-A41B-01 2 107041475 107041475 C T RGPD3 Missense_Mutation p.G983E 0.30 deleterious(0.04) benign(0.05) TCGA-EB-A41B-01 2 113785663 113785663 C T IL36B Intron 0.47 TCGA-EB-A41B-01 2 11780761 11780761 C T GREB1 3'UTR 0.60 TCGA-EB-A41B-01 2 128495477 128495477 G A WDR33 Intron 0.14 TCGA-EB-A41B-01 2 133541592 133541592 G A NCKAP5 Missense_Mutation p.P931L 0.46 tolerated(0.35) benign(0.066) TCGA-EB-A41B-01 2 135756509 135756509 C T MAP3K19 Missense_Mutation p.E125K 0.36 tolerated(0.26) possibly_damaging(0.637) TCGA-EB-A41B-01 2 137852460 137852460 C T THSD7B Missense_Mutation p.S323F 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-EB-A41B-01 2 137917885 137917885 C T THSD7B Missense_Mutation p.S491L 0.45 deleterious(0.03) possibly_damaging(0.504) TCGA-EB-A41B-01 2 141460020 141460020 C T LRP1B Silent p.P2042P 0.49 TCGA-EB-A41B-01 2 166027021 166027021 C T SCN3A Missense_Mutation p.R101Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 2 166894480 166894480 C T SCN1A Missense_Mutation p.D918N 0.47 tolerated(0.12) benign(0.017) TCGA-EB-A41B-01 2 169850304 169850304 C T ABCB11 Missense_Mutation p.G234R 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 2 170034531 170034531 G A LRP2 Missense_Mutation p.S3392F 0.35 probably_damaging(0.985) TCGA-EB-A41B-01 2 171356256 171356256 G A MYO3B Missense_Mutation p.G1076E 0.55 deleterious(0) benign(0.097) TCGA-EB-A41B-01 2 172926379 172926379 C T METAP1D Missense_Mutation p.P65L 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 2 179431307 179431307 C T TTN Missense_Mutation p.E26518K 0.47 TCGA-EB-A41B-01 2 179440704 179440704 C T TTN Silent p.L23385L 0.39 TCGA-EB-A41B-01 2 179587962 179587962 G A TTN Missense_Mutation p.P7258S 0.45 TCGA-EB-A41B-01 2 179595316 179595316 C T TTN Missense_Mutation p.E5982K 0.43 TCGA-EB-A41B-01 2 179615321 179615321 G A TTN Intron 0.32 TCGA-EB-A41B-01 2 196722144 196722144 C T DNAH7 Missense_Mutation p.E2791K 0.39 deleterious(0) probably_damaging(0.992) TCGA-EB-A41B-01 2 198570721 198570721 G A MARS2 Missense_Mutation p.E198K 0.49 deleterious(0) probably_damaging(0.934) TCGA-EB-A41B-01 2 202002571 202002571 C T CFLAR Intron 0.47 TCGA-EB-A41B-01 2 209025650 209025650 C T CRYGA Missense_Mutation p.E135K 0.39 deleterious(0.01) possibly_damaging(0.769) TCGA-EB-A41B-01 2 211512710 211512710 C T CPS1 Missense_Mutation p.R1095C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 2 21228467 21228467 A G APOB Missense_Mutation p.V3758A 0.29 benign(0.338) TCGA-EB-A41B-01 2 21230290 21230290 G A APOB Silent p.F3150F 0.30 TCGA-EB-A41B-01 2 21232149 21232149 C T APOB Missense_Mutation p.E2531K 0.29 possibly_damaging(0.452) TCGA-EB-A41B-01 2 212568865 212568865 G A ERBB4 Missense_Mutation p.S418F 0.48 deleterious(0) probably_damaging(0.991) TCGA-EB-A41B-01 2 226447283 226447283 C T NYAP2 Missense_Mutation p.P384S 0.42 tolerated(0.46) benign(0.272) TCGA-EB-A41B-01 2 234106777 234106777 C T INPP5D Silent p.I898I 0.52 TCGA-EB-A41B-01 2 238289841 238289841 C T COL6A3 Silent p.T538T 0.42 TCGA-EB-A41B-01 2 238475760 238475760 G A PRLH Missense_Mutation p.R69Q 0.49 tolerated(0.38) benign(0.036) TCGA-EB-A41B-01 2 26690266 26690266 G A OTOF Silent p.P1398P 0.65 TCGA-EB-A41B-01 2 29296694 29296694 C T C2orf71 Nonsense_Mutation p.W145* 0.39 TCGA-EB-A41B-01 2 40342678 40342678 G A SLC8A1 Silent p.F879F 0.34 TCGA-EB-A41B-01 2 55436561 55436561 G A CLHC1 Nonsense_Mutation p.Q265* 0.59 TCGA-EB-A41B-01 2 74077540 74077540 C T STAMBP Missense_Mutation p.P302L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 2 95772168 95772168 C T MRPS5 Silent p.E224E 0.26 TCGA-EB-A41B-01 2 95944791 95944791 C T PROM2 Silent p.F391F 0.41 TCGA-EB-A41B-01 3 102187883 102187883 C T ZPLD1 Silent p.F295F 0.37 TCGA-EB-A41B-01 3 10428176 10428176 G A ATP2B2 Missense_Mutation p.L310F 0.48 tolerated(0.06) benign(0.15) TCGA-EB-A41B-01 3 108072515 108072515 G A HHLA2 Silent p.G102G 0.42 TCGA-EB-A41B-01 3 108634990 108634990 G A GUCA1C Silent p.I142I 0.38 TCGA-EB-A41B-01 3 111766770 111766770 C T TMPRSS7 Silent p.T179T 0.44 TCGA-EB-A41B-01 3 121341459 121341459 C T FBXO40 Missense_Mutation p.L395F 0.41 tolerated(0.06) possibly_damaging(0.8) TCGA-EB-A41B-01 3 121613331 121613331 C T SLC15A2 Missense_Mutation p.P3L 0.43 tolerated_low_confidence(0.06) benign(0.001) TCGA-EB-A41B-01 3 122808133 122808133 C T PDIA5 Missense_Mutation p.S54F 0.38 tolerated(0.33) possibly_damaging(0.899) TCGA-EB-A41B-01 3 122808134 122808134 C T PDIA5 Silent p.S54S 0.38 TCGA-EB-A41B-01 3 12447433 12447433 G A PPARG Silent p.E224E 0.38 TCGA-EB-A41B-01 3 128707752 128707752 C T KIAA1257 Missense_Mutation p.G91E 0.37 tolerated(0.06) probably_damaging(0.97) TCGA-EB-A41B-01 3 132086741 132086741 C T ACPP 3'UTR 0.43 TCGA-EB-A41B-01 3 132319283 132319283 G A ACKR4 Silent p.E14E 0.41 TCGA-EB-A41B-01 3 132319284 132319284 G A ACKR4 Missense_Mutation p.E15K 0.41 tolerated(0.09) benign(0.075) TCGA-EB-A41B-01 3 135979356 135979356 A T PCCB Silent p.A156A 0.21 TCGA-EB-A41B-01 3 140275450 140275450 C T CLSTN2 Silent p.S590S 0.41 TCGA-EB-A41B-01 3 142269130 142269130 G A ATR Silent p.S940S 0.45 TCGA-EB-A41B-01 3 151105887 151105887 G A MED12L Missense_Mutation p.G1758E 0.45 tolerated(0.19) possibly_damaging(0.651) TCGA-EB-A41B-01 3 160135717 160135717 C T SMC4 Silent p.L548L 0.33 TCGA-EB-A41B-01 3 160135718 160135718 C G SMC4 Missense_Mutation p.P549A 0.34 deleterious(0.01) benign(0.241) TCGA-EB-A41B-01 3 169099056 169099056 C T MECOM Silent p.R122R 0.38 TCGA-EB-A41B-01 3 172834933 172834933 C A SPATA16 Nonsense_Mutation p.G197* 0.40 TCGA-EB-A41B-01 3 183013108 183013108 G A MCF2L2 Missense_Mutation p.T552I 0.36 tolerated(0.21) benign(0.035) TCGA-EB-A41B-01 3 184299156 184299156 G A EPHB3 Missense_Mutation p.G950R 0.36 deleterious(0) probably_damaging(0.983) TCGA-EB-A41B-01 3 190158117 190158117 G A TMEM207 Nonsense_Mutation p.Q74* 0.51 TCGA-EB-A41B-01 3 192517264 192517264 G A MB21D2 Silent p.D129D 0.38 TCGA-EB-A41B-01 3 194118240 194118240 G A GP5 Missense_Mutation p.P258S 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 3 35763107 35763107 G A ARPP21 Missense_Mutation p.D302N 0.45 deleterious(0) benign(0.239) TCGA-EB-A41B-01 3 36897983 36897983 C T TRANK1 Missense_Mutation p.R1033Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 3 38833586 38833586 G A SCN10A Missense_Mutation p.P115L 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-EB-A41B-01 3 391186 391186 C T CHL1 Silent p.F331F 0.41 TCGA-EB-A41B-01 3 39373977 39373977 G A CCR8 Missense_Mutation p.G52E 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 3 42727939 42727939 G A KLHL40 Missense_Mutation p.G277R 0.33 tolerated(0.12) benign(0.089) TCGA-EB-A41B-01 3 46757139 46757139 G A PRSS50 Missense_Mutation p.A119V 0.41 deleterious(0.03) probably_damaging(0.977) TCGA-EB-A41B-01 3 48420972 48420972 G A FBXW12 Missense_Mutation p.G233D 0.47 tolerated(0.38) benign(0.076) TCGA-EB-A41B-01 3 48699210 48699210 G A CELSR3 Silent p.F286F 0.39 TCGA-EB-A41B-01 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.34 TCGA-EB-A41B-01 3 54958704 54958704 C T LRTM1 Nonsense_Mutation p.W182* 0.43 TCGA-EB-A41B-01 3 55021772 55021772 C T CACNA2D3 Silent p.S894S 0.35 TCGA-EB-A41B-01 3 55107493 55107493 C T CACNA2D3 Silent p.I1003I 0.32 TCGA-EB-A41B-01 3 98188933 98188933 G A OR5K1 Silent p.S171S 0.41 TCGA-EB-A41B-01 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.64 TCGA-EB-A41B-01 4 138453134 138453134 C T PCDH18 Missense_Mutation p.E37K 0.06 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 4 151520200 151520200 G A LRBA Missense_Mutation p.S2002L 0.64 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 4 166935632 166935632 G A TLL1 Missense_Mutation p.G321D 0.15 deleterious(0.03) benign(0.216) TCGA-EB-A41B-01 4 175897790 175897790 G A ADAM29 Missense_Mutation p.G372S 0.19 tolerated(0.61) benign(0.03) TCGA-EB-A41B-01 4 175898947 175898947 C T ADAM29 Silent p.S757S 0.66 TCGA-EB-A41B-01 4 38016353 38016353 C T TBC1D1 Missense_Mutation p.P214L 0.49 tolerated(0.41) benign(0) TCGA-EB-A41B-01 4 48563535 48563535 G A FRYL Missense_Mutation p.S1272F 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 4 52944959 52944959 C T SPATA18 Missense_Mutation p.S360L 0.50 tolerated(0.1) probably_damaging(0.947) TCGA-EB-A41B-01 4 70707655 70707655 G A SULT1E1 3'UTR 0.83 TCGA-EB-A41B-01 4 74477518 74477518 C T RASSF6 Missense_Mutation p.E31K 0.13 tolerated_low_confidence(1) benign(0) TCGA-EB-A41B-01 4 80246563 80246563 C T NAA11 Missense_Mutation p.E157K 0.09 tolerated(0.05) benign(0.066) TCGA-EB-A41B-01 4 80246696 80246696 C T NAA11 Silent p.R112R 0.53 TCGA-EB-A41B-01 4 8235122 8235122 G A SH3TC1 Missense_Mutation p.R1055Q 0.57 tolerated(0.09) benign(0.12) TCGA-EB-A41B-01 4 94547443 94547443 C T GRID2 Silent p.F739F 0.69 TCGA-EB-A41B-01 4 94693236 94693236 G A GRID2 Missense_Mutation p.E871K 0.61 tolerated(0.14) probably_damaging(0.926) TCGA-EB-A41B-01 4 98761974 98761974 G A STPG2 Missense_Mutation p.S385F 0.10 deleterious(0) probably_damaging(0.983) TCGA-EB-A41B-01 5 112899684 112899684 C T YTHDC2 Silent p.I857I 0.45 TCGA-EB-A41B-01 5 112899685 112899685 C T YTHDC2 Missense_Mutation p.L858F 0.45 deleterious(0) probably_damaging(0.998) TCGA-EB-A41B-01 5 121786790 121786790 C T SNCAIP Missense_Mutation p.P750S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A41B-01 5 135587547 135587547 C T TRPC7 Missense_Mutation p.E457K 0.37 deleterious(0) possibly_damaging(0.562) TCGA-EB-A41B-01 5 13922356 13922356 G A DNAH5 Missense_Mutation p.P174S 0.25 possibly_damaging(0.641) TCGA-EB-A41B-01 5 139745124 139745124 A T SLC4A9 Silent p.I581I 0.25 TCGA-EB-A41B-01 5 140227985 140227985 G A PCDHA9 5'UTR 0.29 TCGA-EB-A41B-01 5 140250386 140250386 G A PCDHA11 Silent p.A566A 0.42 TCGA-EB-A41B-01 5 140475116 140475116 C T PCDHB2 Missense_Mutation p.L248F 0.38 tolerated_low_confidence(0.28) benign(0.013) TCGA-EB-A41B-01 5 140581660 140581660 C T PCDHB11 Silent p.I771I 0.41 TCGA-EB-A41B-01 5 140784699 140784699 C A PCDHGA9 Missense_Mutation p.A727D 0.53 deleterious_low_confidence(0.04) benign(0.041) TCGA-EB-A41B-01 5 147024497 147024497 G A JAKMIP2 Silent p.L333L 0.36 TCGA-EB-A41B-01 5 147491423 147491423 C T SPINK5 Silent p.I595I 0.44 TCGA-EB-A41B-01 5 150701465 150701465 C T SLC36A2 Intron 0.50 TCGA-EB-A41B-01 5 150722465 150722465 G A SLC36A2 Missense_Mutation p.H142Y 0.49 tolerated(0.26) probably_damaging(0.931) TCGA-EB-A41B-01 5 151784073 151784073 G A NMUR2 Missense_Mutation p.S201L 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-EB-A41B-01 5 151784168 151784168 G A NMUR2 Silent p.I169I 0.43 TCGA-EB-A41B-01 5 160757985 160757985 A C GABRB2 Missense_Mutation p.Y328D 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 5 161931 161931 G A PLEKHG4B Missense_Mutation p.E485K 0.35 tolerated(0.13) benign(0.004) TCGA-EB-A41B-01 5 178359120 178359120 C T ZFP2 Missense_Mutation p.P269L 0.35 deleterious(0.01) probably_damaging(1) TCGA-EB-A41B-01 5 180166600 180166600 G A OR2Y1 Silent p.F153F 0.43 TCGA-EB-A41B-01 5 21975243 21975243 C T CDH12 Silent p.L161L 0.35 TCGA-EB-A41B-01 5 24593722 24593722 G A CDH10 Intron 0.30 TCGA-EB-A41B-01 5 26890537 26890537 T C CDH9 Missense_Mutation p.N464D 0.35 tolerated(0.87) possibly_damaging(0.492) TCGA-EB-A41B-01 5 26890604 26890604 G A CDH9 Silent p.F441F 0.38 TCGA-EB-A41B-01 5 26915832 26915832 C T CDH9 Silent p.S143S 0.46 TCGA-EB-A41B-01 5 31526580 31526580 G A DROSHA Missense_Mutation p.P154S 0.32 tolerated_low_confidence(0.3) possibly_damaging(0.857) TCGA-EB-A41B-01 5 33577051 33577051 G A ADAMTS12 Missense_Mutation p.S1027F 0.37 tolerated(0.09) benign(0.219) TCGA-EB-A41B-01 5 42719517 42719517 C T GHR Silent p.I636I 0.35 TCGA-EB-A41B-01 5 482759 482759 A T SLC9A3 Missense_Mutation p.F420L 0.33 deleterious(0) benign(0.37) TCGA-EB-A41B-01 5 54696175 54696175 C T SKIV2L2 Nonsense_Mutation p.R803* 0.40 TCGA-EB-A41B-01 5 75428020 75428020 C T SV2C Missense_Mutation p.R149C 0.33 deleterious(0) probably_damaging(0.976) TCGA-EB-A41B-01 5 90046365 90046365 C T GPR98 Intron 0.38 TCGA-EB-A41B-01 5 90052422 90052422 G A GPR98 Missense_Mutation p.G3911E 0.38 probably_damaging(0.994) TCGA-EB-A41B-01 5 90124847 90124847 G A GPR98 Silent p.Q5485Q 0.38 TCGA-EB-A41B-01 6 105526370 105526370 G A LIN28B Silent p.Q155Q 0.48 TCGA-EB-A41B-01 6 105526452 105526452 G C LIN28B Missense_Mutation p.E183Q 0.41 deleterious_low_confidence(0.01) benign(0.058) TCGA-EB-A41B-01 6 105526626 105526626 G C LIN28B Missense_Mutation p.G241R 0.35 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EB-A41B-01 6 10882082 10882082 G A GCM2 5'UTR 0.84 TCGA-EB-A41B-01 6 137329785 137329785 G A IL20RA Silent p.P225P 0.33 TCGA-EB-A41B-01 6 149699271 149699271 C T TAB2 Missense_Mutation p.H74Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-EB-A41B-01 6 151789844 151789844 C T C6orf211 Missense_Mutation p.H309Y 0.29 deleterious(0.01) benign(0.1) TCGA-EB-A41B-01 6 155764506 155764506 C T NOX3 Nonsense_Mutation p.W129* 0.44 TCGA-EB-A41B-01 6 161010654 161010654 C T LPA Missense_Mutation p.R1293K 0.37 tolerated(0.43) probably_damaging(0.981) TCGA-EB-A41B-01 6 161139418 161139419 CA - PLG Frame_Shift_Del p.T295Lfs*13 0.32 TCGA-EB-A41B-01 6 161173248 161173248 G A PLG Missense_Mutation p.E743K 0.44 deleterious(0) probably_damaging(0.998) TCGA-EB-A41B-01 6 26045863 26045863 C T HIST1H3C Silent p.I75I 0.78 TCGA-EB-A41B-01 6 31083824 31083824 C T CDSN Missense_Mutation p.G523E 0.91 tolerated_low_confidence(0.11) probably_damaging(0.912) TCGA-EB-A41B-01 6 31107563 31107563 C T PSORS1C1 Missense_Mutation p.P105S 0.82 tolerated_low_confidence(0.09) benign(0.012) TCGA-EB-A41B-01 6 31963519 31963519 C T C4A Missense_Mutation p.R1060W 0.76 deleterious(0) probably_damaging(0.992) TCGA-EB-A41B-01 6 32037503 32037503 G A TNXB Missense_Mutation p.S1805F 0.94 possibly_damaging(0.614) TCGA-EB-A41B-01 6 32260606 32260606 G A C6orf10 3'UTR 0.90 TCGA-EB-A41B-01 6 33373044 33373044 T C KIFC1 Missense_Mutation p.I391T 0.85 deleterious(0) probably_damaging(0.928) TCGA-EB-A41B-01 6 38843398 38843398 C T DNAH8 Missense_Mutation p.S2334F 0.91 benign(0.373) TCGA-EB-A41B-01 6 38881630 38881630 G A DNAH8 Missense_Mutation p.D3072N 0.88 benign(0.005) TCGA-EB-A41B-01 6 42641897 42641897 C T UBR2 Missense_Mutation p.P1406L 0.90 deleterious(0.01) benign(0.382) TCGA-EB-A41B-01 6 42858347 42858347 G A C6orf226 Silent p.P60P 0.81 TCGA-EB-A41B-01 6 42858348 42858348 G A C6orf226 Missense_Mutation p.P60L 0.81 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EB-A41B-01 6 56496733 56496733 G A DST Missense_Mutation p.P767L 0.52 probably_damaging(1) TCGA-EB-A41B-01 6 66205332 66205332 C T EYS 5'UTR 0.46 TCGA-EB-A41B-01 6 70966516 70966516 C T COL9A1 Silent p.R486R 0.45 TCGA-EB-A41B-01 7 100350186 100350186 G A ZAN Missense_Mutation p.E820K 0.41 unknown(0) TCGA-EB-A41B-01 7 100861343 100861343 G A ZNHIT1 5'UTR 0.36 TCGA-EB-A41B-01 7 106797452 106797452 C T PRKAR2B Silent p.F314F 0.42 TCGA-EB-A41B-01 7 112462317 112462317 G A C7orf60 Missense_Mutation p.P234S 0.45 deleterious(0.02) probably_damaging(0.954) TCGA-EB-A41B-01 7 127722010 127722010 C T SND1 Intron 0.41 TCGA-EB-A41B-01 7 138602793 138602793 G A KIAA1549 Missense_Mutation p.R527C 0.59 deleterious(0.04) benign(0.394) TCGA-EB-A41B-01 7 138602794 138602794 G A KIAA1549 Silent p.G526G 0.59 TCGA-EB-A41B-01 7 141478946 141478946 C T TAS2R4 Missense_Mutation p.P220S 0.47 deleterious(0) probably_damaging(0.997) TCGA-EB-A41B-01 7 141539280 141539280 C T PRSS37 Splice_Site p.X12_splice 0.52 TCGA-EB-A41B-01 7 142239650 142239650 C T TRBV9 Missense_Mutation p.G77E 0.41 deleterious(0.03) possibly_damaging(0.521) TCGA-EB-A41B-01 7 142334240 142334240 G A TRBV20-1 5'UTR 0.44 TCGA-EB-A41B-01 7 142622563 142622563 C T TRPV5 Intron 0.36 TCGA-EB-A41B-01 7 143771361 143771361 C T OR2A25 Missense_Mutation p.P17S 0.39 tolerated(1) benign(0.064) TCGA-EB-A41B-01 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.49 tolerated(1) benign(0.006) TCGA-EB-A41B-01 7 148524301 148524301 G A EZH2 Missense_Mutation p.S228F 0.42 deleterious(0.01) possibly_damaging(0.564) TCGA-EB-A41B-01 7 150034480 150034480 G A LRRC61 Missense_Mutation p.R177Q 0.42 tolerated(0.18) benign(0.028) TCGA-EB-A41B-01 7 150873259 150873259 G A ASB10 Silent p.L448L 0.44 TCGA-EB-A41B-01 7 151873700 151873700 G A KMT2C Silent p.S2946S 0.36 TCGA-EB-A41B-01 7 16902252 16902252 C A AGR3 Missense_Mutation p.D70Y 0.31 deleterious(0.04) probably_damaging(0.947) TCGA-EB-A41B-01 7 16902253 16902253 C T AGR3 Silent p.E69E 0.31 TCGA-EB-A41B-01 7 25175507 25175507 C G C7orf31 3'UTR 0.47 TCGA-EB-A41B-01 7 29963608 29963608 C T SCRN1 Missense_Mutation p.D424N 0.38 tolerated(0.1) probably_damaging(0.997) TCGA-EB-A41B-01 7 31692233 31692233 C T CCDC129 Silent p.I1001I 0.40 TCGA-EB-A41B-01 7 34888123 34888123 C T NPSR1 Silent p.F291F 0.39 TCGA-EB-A41B-01 7 36373727 36373727 C T KIAA0895 Nonsense_Mutation p.W348* 0.46 TCGA-EB-A41B-01 7 36763840 36763843 TCTC - AOAH 5'UTR 0.51 TCGA-EB-A41B-01 7 39472825 39472825 C T POU6F2 Silent p.I392I 0.29 TCGA-EB-A41B-01 7 5540436 5540436 G A FBXL18 Silent p.L488L 0.67 TCGA-EB-A41B-01 7 82996899 82996899 C T SEMA3E 3'UTR 0.33 TCGA-EB-A41B-01 7 94540698 94540698 G A PPP1R9A Missense_Mutation p.E425K 0.44 tolerated(0.08) possibly_damaging(0.615) TCGA-EB-A41B-01 7 98257818 98257818 C T NPTX2 Silent p.I391I 0.47 TCGA-EB-A41B-01 8 10468104 10468104 C T RP1L1 Silent p.L1168L 0.73 TCGA-EB-A41B-01 8 113649061 113649061 G A CSMD3 Silent p.L1234L 0.61 TCGA-EB-A41B-01 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.11 tolerated(0.46) benign(0.348) TCGA-EB-A41B-01 8 139164533 139164533 C T FAM135B Missense_Mutation p.E729K 0.38 deleterious(0) probably_damaging(0.998) TCGA-EB-A41B-01 8 139164685 139164685 C T FAM135B Missense_Mutation p.R678K 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A41B-01 8 144657657 144657657 G C NAPRT1 Silent p.T409T 0.64 TCGA-EB-A41B-01 8 144940435 144940435 G A EPPK1 Silent p.L2329L 0.11 TCGA-EB-A41B-01 8 145094817 145094817 C T SPATC1 Silent p.F73F 0.59 TCGA-EB-A41B-01 8 18658873 18658873 A C PSD3 Missense_Mutation p.S644A 0.62 tolerated(0.68) benign(0.116) TCGA-EB-A41B-01 8 22938498 22938498 G A RP11-875O11.2 Intron 0.71 TCGA-EB-A41B-01 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.62 probably_damaging(0.999) TCGA-EB-A41B-01 8 35541202 35541202 C T UNC5D Silent p.I236I 0.81 TCGA-EB-A41B-01 8 38677202 38677202 C T TACC1 Missense_Mutation p.S147F 0.73 deleterious(0) possibly_damaging(0.764) TCGA-EB-A41B-01 8 39079153 39079153 G A ADAM32 Missense_Mutation p.D420N 0.56 tolerated(0.31) benign(0.309) TCGA-EB-A41B-01 8 53571458 53571458 G A RB1CC1 Missense_Mutation p.P590S 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A41B-01 8 55540336 55540336 C T RP1 Silent p.F1298F 0.63 TCGA-EB-A41B-01 8 69358701 69358701 G A C8orf34 Intron 0.50 TCGA-EB-A41B-01 8 82371429 82371429 C T FABP9 Missense_Mutation p.E73K 0.57 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A41B-01 8 92378934 92378934 G A SLC26A7 Missense_Mutation p.D539N 0.15 tolerated(0.28) benign(0.016) TCGA-EB-A41B-01 8 96047698 96047698 C T NDUFAF6 Missense_Mutation p.S105F 0.56 deleterious(0) probably_damaging(0.971) TCGA-EB-A41B-01 8 99146235 99146235 C T POP1 Missense_Mutation p.A265V 0.51 tolerated(0.12) benign(0.288) TCGA-EB-A41B-01 9 101125000 101125000 C T GABBR2 Missense_Mutation p.M630I 0.42 tolerated(0.45) benign(0.006) TCGA-EB-A41B-01 9 104432941 104432941 C T GRIN3A Missense_Mutation p.E585K 0.41 tolerated(0.16) probably_damaging(0.998) TCGA-EB-A41B-01 9 105767081 105767081 G A CYLC2 Silent p.R95R 0.41 TCGA-EB-A41B-01 9 107289440 107289440 G A OR13C4 Silent p.L17L 0.40 TCGA-EB-A41B-01 9 113547936 113547936 G A MUSK Silent p.R572R 0.33 TCGA-EB-A41B-01 9 114486106 114486106 C T C9orf84 Silent p.R576R 0.38 TCGA-EB-A41B-01 9 117169022 117169022 A G DFNB31 Missense_Mutation p.S617P 0.29 deleterious(0.01) possibly_damaging(0.602) TCGA-EB-A41B-01 9 130511660 130511660 G A SH2D3C Silent p.F323F 0.50 TCGA-EB-A41B-01 9 133967055 133967055 C T LAMC3 Nonsense_Mutation p.Q1537* 0.25 TCGA-EB-A41B-01 9 135690035 135690035 C T AK8 Silent p.K323K 0.18 TCGA-EB-A41B-01 9 139391690 139391690 G A NOTCH1 Silent p.A2167A 0.27 TCGA-EB-A41B-01 9 40704187 40704187 G A SPATA31A3 Missense_Mutation p.G615E 0.77 tolerated(0.65) possibly_damaging(0.774) TCGA-EB-A41B-01 9 990639 990639 C T DMRT3 Silent p.P351P 0.69 TCGA-EB-A41B-01 X 100364926 100364926 G C CENPI Missense_Mutation p.R177P 0.29 tolerated(0.11) benign(0.025) TCGA-EB-A41B-01 X 10102582 10102582 G A WWC3 Silent p.T903T 0.42 TCGA-EB-A41B-01 X 106016203 106016203 C T RNF128 Missense_Mutation p.S182F 0.41 deleterious(0.03) possibly_damaging(0.839) TCGA-EB-A41B-01 X 106410910 106410910 C T NUP62CL Missense_Mutation p.E55K 0.41 tolerated(0.68) benign(0.05) TCGA-EB-A41B-01 X 107224914 107224914 C T TEX13B Nonsense_Mutation p.W148* 0.41 TCGA-EB-A41B-01 X 108911460 108911460 G A ACSL4 Silent p.V436V 0.48 TCGA-EB-A41B-01 X 110951451 110951451 C T ALG13 Missense_Mutation p.P194S 0.41 tolerated_low_confidence(0.57) benign(0) TCGA-EB-A41B-01 X 111914451 111914451 T A LHFPL1 Silent p.G56G 0.42 TCGA-EB-A41B-01 X 115569056 115569056 G A SLC6A14 Missense_Mutation p.M49I 0.41 tolerated(0.17) benign(0.276) TCGA-EB-A41B-01 X 118284430 118284430 C T KIAA1210 Missense_Mutation p.G38E 0.35 tolerated_low_confidence(0.16) possibly_damaging(0.84) TCGA-EB-A41B-01 X 118604373 118604373 C T SLC25A5 Silent p.I212I 0.38 TCGA-EB-A41B-01 X 123034483 123034483 C T XIAP Silent p.L414L 0.36 TCGA-EB-A41B-01 X 135432293 135432293 G A GPR112 Missense_Mutation p.G2143D 0.43 deleterious(0.04) benign(0.11) TCGA-EB-A41B-01 X 135579801 135579801 C T HTATSF1 5'UTR 0.39 TCGA-EB-A41B-01 X 139038210 139038210 G A CXorf66 Missense_Mutation p.R311C 0.38 deleterious(0.05) benign(0.193) TCGA-EB-A41B-01 X 142718824 142718824 G A SLITRK4 Missense_Mutation p.S34L 0.36 deleterious(0.01) probably_damaging(0.95) TCGA-EB-A41B-01 X 144905163 144905163 G A SLITRK2 Missense_Mutation p.G407E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A41B-01 X 144906357 144906357 G A SLITRK2 Missense_Mutation p.G805E 0.40 tolerated(0.06) benign(0.334) TCGA-EB-A41B-01 X 149787595 149787595 C T MTM1 Missense_Mutation p.P143S 0.40 deleterious(0) possibly_damaging(0.781) TCGA-EB-A41B-01 X 151896630 151896630 G A MAGEA12 3'Flank 0.41 TCGA-EB-A41B-01 X 153137687 153137687 C T L1CAM Missense_Mutation p.R107K 0.45 tolerated(0.31) benign(0.007) TCGA-EB-A41B-01 X 15349684 15349684 C T PIGA Silent p.T123T 0.44 TCGA-EB-A41B-01 X 155004369 155004369 C T SPRY3 Missense_Mutation p.P279L 0.45 deleterious(0) benign(0.03) TCGA-EB-A41B-01 X 2408704 2408704 G A ZBED1 Silent p.P19P 0.37 TCGA-EB-A41B-01 X 35944221 35944221 G A CXorf22 Missense_Mutation p.E113K 0.42 deleterious(0.01) probably_damaging(0.95) TCGA-EB-A41B-01 X 47774848 47774848 C T ZNF81 Missense_Mutation p.P268L 0.51 tolerated(0.11) benign(0.202) TCGA-EB-A41B-01 X 49054237 49054237 A C SYP Missense_Mutation p.V55G 0.42 deleterious(0) probably_damaging(0.994) TCGA-EB-A41B-01 X 50052246 50052246 G A CCNB3 Silent p.E359E 0.35 TCGA-EB-A41B-01 X 53277358 53277358 G A IQSEC2 Silent p.F840F 0.45 TCGA-EB-A41B-01 X 54957644 54957644 C T TRO 3'UTR 0.36 TCGA-EB-A41B-01 X 57618848 57618848 G A ZXDB Missense_Mutation p.E123K 0.55 tolerated_low_confidence(0.3) benign(0) TCGA-EB-A41B-01 X 69595988 69595988 G A KIF4A Missense_Mutation p.M654I 0.39 tolerated(0.09) possibly_damaging(0.66) TCGA-EB-A41B-01 X 69829020 69829020 C T TEX11 Silent p.V615V 0.38 TCGA-EB-A41B-01 X 70823758 70823758 G A ACRC Missense_Mutation p.D211N 0.41 unknown(0) TCGA-EB-A41B-01 X 73960801 73960801 C T KIAA2022 Silent p.R1197R 0.35 TCGA-EB-A41B-01 X 77528539 77528539 G A CYSLTR1 Silent p.I235I 0.36 TCGA-EB-A41B-01 X 79698179 79698179 G A FAM46D Silent p.V47V 0.34 TCGA-EB-A41B-01 X 91873772 91873772 G A PCDH11X Missense_Mutation p.D1293N 0.41 tolerated_low_confidence(0.12) benign(0.01) TCGA-EB-A42Y-01 10 89717766 89717766 T G PTEN Missense_Mutation p.M264R 0.43 deleterious(0.01) benign(0.016) TCGA-EB-A42Y-01 10 93699825 93699825 T A BTAF1 Splice_Site p.X85_splice 0.49 TCGA-EB-A42Y-01 10 97969640 97969640 T C BLNK Missense_Mutation p.T234A 0.47 tolerated(0.83) benign(0.001) TCGA-EB-A42Y-01 11 119148884 119148895 TGAATTATACTG - CBL In_Frame_Del p.L370_E373del 0.91 TCGA-EB-A42Y-01 11 11986189 11986189 C T DKK3 Missense_Mutation p.R292H 0.43 tolerated(0.5) benign(0.003) TCGA-EB-A42Y-01 11 123677045 123677045 T C OR6M1 Missense_Mutation p.S5G 0.83 deleterious(0) benign(0.009) TCGA-EB-A42Y-01 11 5510842 5510842 G T OR52D1 Missense_Mutation p.E302D 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A42Y-01 11 6231215 6231215 G A C11orf42 Missense_Mutation p.G70S 0.45 tolerated(0.39) benign(0.014) TCGA-EB-A42Y-01 12 112512562 112512562 A C NAA25 Missense_Mutation p.D261E 0.43 deleterious(0) probably_damaging(0.957) TCGA-EB-A42Y-01 12 131484963 131484963 G A GPR133 Silent p.L334L 0.36 TCGA-EB-A42Y-01 12 13716493 13716493 T G GRIN2B Missense_Mutation p.T1227P 0.38 tolerated(0.12) benign(0) TCGA-EB-A42Y-01 12 27542935 27542935 A G ARNTL2 Intron 0.21 TCGA-EB-A42Y-01 12 51888783 51888783 A C SLC4A8 Missense_Mutation p.I942L 0.38 deleterious(0.01) benign(0.423) TCGA-EB-A42Y-01 12 52943994 52943994 C T KRT71 Missense_Mutation p.E159K 0.30 deleterious(0.01) possibly_damaging(0.648) TCGA-EB-A42Y-01 12 53433859 53433859 C T EIF4B Intron 0.43 TCGA-EB-A42Y-01 12 95676136 95676136 G T VEZT Silent p.R348R 0.05 TCGA-EB-A42Y-01 13 114193672 114193672 G C TMCO3 Missense_Mutation p.V514L 0.42 tolerated(0.26) benign(0.026) TCGA-EB-A42Y-01 13 33635349 33635349 G T KL Missense_Mutation p.W711C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A42Y-01 13 99574349 99574349 G A DOCK9 Silent p.L180L 0.38 TCGA-EB-A42Y-01 14 99642005 99642005 G A BCL11B Missense_Mutation p.R390W 0.44 deleterious(0) probably_damaging(0.996) TCGA-EB-A42Y-01 15 25492497 25492497 G A SNORD115-42 RNA 0.44 TCGA-EB-A42Y-01 15 45387215 45387215 C G DUOX2 Missense_Mutation p.E1438D 0.76 tolerated(0.17) possibly_damaging(0.834) TCGA-EB-A42Y-01 15 75015123 75015123 G A CYP1A1 Missense_Mutation p.R106W 0.41 deleterious(0) possibly_damaging(0.9) TCGA-EB-A42Y-01 16 1034823 1034823 G A SOX8 Missense_Mutation p.D260N 0.35 deleterious(0.01) possibly_damaging(0.86) TCGA-EB-A42Y-01 16 68160464 68160464 G T NFATC3 Missense_Mutation p.G451V 0.43 deleterious(0.01) probably_damaging(1) TCGA-EB-A42Y-01 16 83250981 83250981 A G CDH13 Missense_Mutation p.K219R 0.11 tolerated(1) benign(0.01) TCGA-EB-A42Y-01 16 919893 919893 G A LMF1 Missense_Mutation p.A469V 0.62 deleterious(0.05) probably_damaging(0.972) TCGA-EB-A42Y-01 17 10428079 10428079 G A MYH2 Missense_Mutation p.L1656F 0.50 deleterious(0.03) benign(0.12) TCGA-EB-A42Y-01 17 73657119 73657119 A C RECQL5 Missense_Mutation p.V301G 0.07 deleterious(0) probably_damaging(0.958) TCGA-EB-A42Y-01 18 72999873 72999873 C T TSHZ1 Silent p.L792L 0.31 TCGA-EB-A42Y-01 1 111146526 111146526 G A KCNA2 Silent p.L293L 0.47 TCGA-EB-A42Y-01 1 12353756 12353756 C T VPS13D Nonsense_Mutation p.Q2010* 0.47 TCGA-EB-A42Y-01 1 15793953 15793953 G A CELA2A Missense_Mutation p.G238R 0.55 tolerated(0.08) possibly_damaging(0.621) TCGA-EB-A42Y-01 1 171303595 171303595 C T FMO4 Silent p.I291I 0.41 TCGA-EB-A42Y-01 1 196876133 196876133 T G CFHR4 Silent p.G193G 0.48 TCGA-EB-A42Y-01 1 23762469 23762469 G A ASAP3 Missense_Mutation p.R542C 0.38 deleterious(0) possibly_damaging(0.838) TCGA-EB-A42Y-01 1 242013869 242013869 A G EXO1 Missense_Mutation p.K48E 0.06 deleterious(0.01) possibly_damaging(0.633) TCGA-EB-A42Y-01 1 31437519 31437519 A C PUM1 Splice_Site p.X775_splice 0.48 TCGA-EB-A42Y-01 1 78340633 78340633 C A FAM73A Missense_Mutation p.R595S 0.50 deleterious(0) probably_damaging(0.953) TCGA-EB-A42Y-01 1 97839149 97839149 C T DPYD Missense_Mutation p.G676R 0.31 deleterious(0) probably_damaging(0.932) TCGA-EB-A42Y-01 20 30674488 30674488 C T HCK Missense_Mutation p.S298L 0.56 deleterious(0) possibly_damaging(0.891) TCGA-EB-A42Y-01 21 34029011 34029011 T G SYNJ1 Missense_Mutation p.E966D 0.42 tolerated(0.12) possibly_damaging(0.517) TCGA-EB-A42Y-01 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.42 tolerated(0.11) probably_damaging(0.993) TCGA-EB-A42Y-01 22 37692046 37692046 G T CYTH4 Missense_Mutation p.M58I 0.33 tolerated(0.33) benign(0.005) TCGA-EB-A42Y-01 22 38369705 38369715 ACTGGGGGCGG - SOX10 Frame_Shift_Del p.R397* 0.29 TCGA-EB-A42Y-01 22 41605600 41605600 C T L3MBTL2 Intron 0.46 TCGA-EB-A42Y-01 2 168107974 168107974 G A XIRP2 Missense_Mutation p.G3358R 0.29 probably_damaging(0.999) TCGA-EB-A42Y-01 2 179490119 179490119 A T TTN Missense_Mutation p.V14810D 0.39 TCGA-EB-A42Y-01 2 179615517 179615517 A C TTN Intron 0.41 TCGA-EB-A42Y-01 2 190444550 190444550 G A SLC40A1 Missense_Mutation p.L34F 0.41 deleterious(0) benign(0.247) TCGA-EB-A42Y-01 2 201477495 201477495 C T AOX1 Missense_Mutation p.S476F 0.08 deleterious(0) possibly_damaging(0.76) TCGA-EB-A42Y-01 2 208632890 208632890 A C FZD5 Missense_Mutation p.C192G 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-EB-A42Y-01 2 216236929 216236929 T A FN1 Missense_Mutation p.Q2139H 0.36 deleterious(0.05) benign(0.012) TCGA-EB-A42Y-01 2 233321902 233321902 C G ALPI Missense_Mutation p.A173G 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A42Y-01 2 242695202 242695202 C G D2HGDH Intron 0.32 TCGA-EB-A42Y-01 3 119134952 119134952 G T ARHGAP31 Missense_Mutation p.L1392F 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A42Y-01 3 121650513 121650513 A C SLC15A2 Missense_Mutation p.E564D 0.39 tolerated(0.39) benign(0.001) TCGA-EB-A42Y-01 3 149243902 149243902 G A WWTR1 Missense_Mutation p.H306Y 0.27 deleterious(0) possibly_damaging(0.456) TCGA-EB-A42Y-01 3 169664004 169664004 C T RP11-379K17.4 RNA 0.32 TCGA-EB-A42Y-01 3 172538029 172538029 G C ECT2 3'UTR 0.46 TCGA-EB-A42Y-01 3 26751195 26751195 C T LRRC3B Missense_Mutation p.S11F 0.31 deleterious(0.01) possibly_damaging(0.888) TCGA-EB-A42Y-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.47 deleterious(0) probably_damaging(0.954) TCGA-EB-A42Y-01 4 27010414 27010414 T G STIM2 Missense_Mutation p.L435V 0.47 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A42Y-01 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.50 deleterious(0) probably_damaging(1) TCGA-EB-A42Y-01 5 1079555 1079555 G C SLC12A7 Missense_Mutation p.P452A 0.10 deleterious(0) probably_damaging(0.973) TCGA-EB-A42Y-01 5 1079596 1079596 G C SLC12A7 Nonsense_Mutation p.S438* 0.09 TCGA-EB-A42Y-01 5 174869336 174869336 G A DRD1 Missense_Mutation p.P256L 0.30 tolerated(0.08) benign(0.005) TCGA-EB-A42Y-01 5 26890037 26890037 C A CDH9 Missense_Mutation p.V474F 0.15 deleterious(0.02) possibly_damaging(0.771) TCGA-EB-A42Y-01 5 33937492 33937492 C T RXFP3 Missense_Mutation p.A216V 0.30 tolerated(0.63) benign(0.002) TCGA-EB-A42Y-01 5 45262800 45262800 C G HCN1 Missense_Mutation p.M632I 0.25 deleterious(0) possibly_damaging(0.838) TCGA-EB-A42Y-01 7 117398016 117398016 G A CTTNBP2 Missense_Mutation p.P1061S 0.11 tolerated(0.77) benign(0.005) TCGA-EB-A42Y-01 7 48311414 48311414 G A ABCA13 Missense_Mutation p.M717I 0.40 benign(0.008) TCGA-EB-A42Y-01 7 94147545 94147545 T A CASD1 Missense_Mutation p.H87Q 0.28 tolerated(0.15) benign(0.004) TCGA-EB-A42Y-01 8 131812721 131812721 C T ADCY8 Missense_Mutation p.G1004E 0.33 deleterious(0.04) probably_damaging(1) TCGA-EB-A42Y-01 8 55534850 55534850 T G RP1 Splice_Site p.X263_splice 0.35 TCGA-EB-A42Y-01 8 99963767 99963767 C T OSR2 Silent p.P259P 0.13 TCGA-EB-A42Y-01 9 104239214 104239214 C T TMEM246 Missense_Mutation p.R54H 0.47 deleterious(0.03) benign(0.027) TCGA-EB-A42Y-01 9 14806720 14806720 G A FREM1 Silent p.G1071G 0.43 TCGA-EB-A42Y-01 9 21367998 21367998 C T IFNA13 Silent p.S4S 0.40 TCGA-EB-A42Y-01 X 153580602 153580602 T C FLNA Missense_Mutation p.H2239R 0.88 tolerated(0.12) benign(0.019) TCGA-EB-A42Y-01 X 35984826 35984826 A C CXorf22 Missense_Mutation p.I519L 0.62 tolerated(0.05) benign(0.013) TCGA-EB-A42Y-01 X 48054551 48054551 T G SSX5 Missense_Mutation p.Q28H 0.76 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EB-A42Y-01 X 53574852 53574852 T C HUWE1 Missense_Mutation p.Q3473R 0.27 benign(0) TCGA-EB-A42Z-01 10 100150679 100150679 G A PYROXD2 Intron 0.27 TCGA-EB-A42Z-01 10 100152312 100152312 C T PYROXD2 Silent p.K313K 0.28 TCGA-EB-A42Z-01 10 25313374 25313374 C A THNSL1 Missense_Mutation p.P408T 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 10 5042629 5042629 C T AKR1C2 Intron 0.67 TCGA-EB-A42Z-01 10 96480165 96480165 C A CYP2C18 Missense_Mutation p.Q278K 0.27 tolerated(0.59) benign(0.003) TCGA-EB-A42Z-01 10 96748622 96748622 G A CYP2C9 Missense_Mutation p.G437E 0.54 deleterious(0) probably_damaging(0.996) TCGA-EB-A42Z-01 10 96827345 96827345 C T CYP2C8 Missense_Mutation p.G91E 0.23 deleterious(0.01) possibly_damaging(0.708) TCGA-EB-A42Z-01 10 98411281 98411281 C T PIK3AP1 Silent p.V280V 0.52 TCGA-EB-A42Z-01 11 102992106 102992106 C T DYNC2H1 Nonsense_Mutation p.R456* 0.70 TCGA-EB-A42Z-01 11 10521700 10521700 C T AMPD3 Missense_Mutation p.P551L 0.36 deleterious(0.02) benign(0.248) TCGA-EB-A42Z-01 11 124294202 124294202 G A OR8B4 Missense_Mutation p.T189I 0.77 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-EB-A42Z-01 11 13721894 13721894 G T FAR1 Missense_Mutation p.D74Y 0.50 deleterious(0) benign(0.022) TCGA-EB-A42Z-01 11 46722559 46722559 G A ZNF408 5'UTR 0.31 TCGA-EB-A42Z-01 11 5345264 5345264 C T OR51B2 Silent p.R88R 0.40 TCGA-EB-A42Z-01 11 55340310 55340310 C T OR4C16 Missense_Mutation p.S236F 0.39 deleterious(0.01) benign(0.232) TCGA-EB-A42Z-01 11 62373585 62373585 G A EML3 Missense_Mutation p.R536C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A42Z-01 12 106633346 106633346 G A CKAP4 Missense_Mutation p.S422F 0.41 deleterious(0.01) possibly_damaging(0.861) TCGA-EB-A42Z-01 12 108686584 108686584 G A CMKLR1 Silent p.F52F 0.46 TCGA-EB-A42Z-01 12 124416315 124416315 C T DNAH10 Missense_Mutation p.S4232L 0.74 benign(0.046) TCGA-EB-A42Z-01 12 53185114 53185114 G A KRT3 Silent p.L471L 0.64 TCGA-EB-A42Z-01 12 57605312 57605312 C T LRP1 Silent p.V4378V 0.49 TCGA-EB-A42Z-01 12 57858949 57858949 T A GLI1 Missense_Mutation p.F149I 0.37 tolerated(0.06) benign(0.14) TCGA-EB-A42Z-01 12 8377401 8377401 C T FAM90A1 Missense_Mutation p.G10R 0.25 tolerated(0.84) possibly_damaging(0.696) TCGA-EB-A42Z-01 13 113798367 113798367 C T F10 Silent p.I235I 0.36 TCGA-EB-A42Z-01 14 105846165 105846165 C G PACS2 Missense_Mutation p.P350R 0.30 deleterious(0.04) probably_damaging(1) TCGA-EB-A42Z-01 14 70497071 70497071 C T SMOC1 3'UTR 0.47 TCGA-EB-A42Z-01 14 70855211 70855211 G A SYNJ2BP Silent p.L59L 0.39 TCGA-EB-A42Z-01 15 43748790 43748790 G T TP53BP1 Silent p.I672I 0.41 TCGA-EB-A42Z-01 15 44914522 44914522 A T SPG11 Missense_Mutation p.N780K 0.41 tolerated(0.09) benign(0.002) TCGA-EB-A42Z-01 15 49663536 49663536 G A FAM227B Missense_Mutation p.S358F 0.41 tolerated(0.74) benign(0.001) TCGA-EB-A42Z-01 15 50171585 50171585 C T ATP8B4 Silent p.G923G 0.27 TCGA-EB-A42Z-01 15 50171586 50171586 C T ATP8B4 Missense_Mutation p.G923E 0.27 deleterious(0) probably_damaging(0.976) TCGA-EB-A42Z-01 15 74630382 74630382 G A CYP11A1 Silent p.L499L 0.32 TCGA-EB-A42Z-01 15 83331954 83331954 G A AP3B2 Silent p.P824P 0.32 TCGA-EB-A42Z-01 16 1962089 1962089 G A HS3ST6 Silent p.I146I 0.25 TCGA-EB-A42Z-01 16 23703314 23703314 C T ERN2 Nonsense_Mutation p.W830* 0.42 TCGA-EB-A42Z-01 16 28500660 28500660 G A CLN3 Missense_Mutation p.A58V 0.08 deleterious(0) probably_damaging(0.967) TCGA-EB-A42Z-01 16 2903149 2903149 C T PRSS22 Missense_Mutation p.G300E 0.45 tolerated(0.22) benign(0.003) TCGA-EB-A42Z-01 16 31478032 31478032 G T ARMC5 Missense_Mutation p.R877L 0.59 deleterious(0.02) probably_damaging(0.953) TCGA-EB-A42Z-01 16 4664904 4664904 C T UBALD1 5'UTR 0.50 TCGA-EB-A42Z-01 16 61747764 61747764 G A CDH8 Silent p.F545F 0.37 TCGA-EB-A42Z-01 17 26881367 26881367 G A PIGS Silent p.F513F 0.43 TCGA-EB-A42Z-01 17 26904706 26904706 C T SPAG5 3'UTR 0.40 TCGA-EB-A42Z-01 17 61895704 61895704 C T DDX42 Silent p.D921D 0.36 TCGA-EB-A42Z-01 17 7328983 7328983 C A C17orf74 5'UTR 0.48 TCGA-EB-A42Z-01 18 2891242 2891242 G A EMILIN2 Missense_Mutation p.E373K 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A42Z-01 19 14141628 14141628 C T RLN3 Silent p.A99A 0.50 TCGA-EB-A42Z-01 19 19351414 19351414 T C NCAN Missense_Mutation p.F1138L 0.33 tolerated(0.3) probably_damaging(0.992) TCGA-EB-A42Z-01 19 282216 282216 T C PPAP2C Missense_Mutation p.Y233C 0.52 deleterious(0) probably_damaging(0.986) TCGA-EB-A42Z-01 19 38910653 38910653 G A RASGRP4 Silent p.L170L 0.48 TCGA-EB-A42Z-01 19 50155945 50155945 G C SCAF1 Missense_Mutation p.G767R 0.75 unknown(0) TCGA-EB-A42Z-01 19 51656392 51656392 G A SIGLEC7 Missense_Mutation p.E432K 0.35 tolerated(0.09) benign(0.252) TCGA-EB-A42Z-01 19 53014631 53014631 C T ZNF578 Missense_Mutation p.H333Y 0.30 deleterious(0) possibly_damaging(0.494) TCGA-EB-A42Z-01 19 54625942 54625942 C T PRPF31 Missense_Mutation p.P130L 0.39 tolerated(0.48) possibly_damaging(0.511) TCGA-EB-A42Z-01 19 56223294 56223294 G C NLRP9 Missense_Mutation p.I905M 0.37 deleterious(0.01) benign(0.01) TCGA-EB-A42Z-01 19 56424275 56424275 G T NLRP13 Missense_Mutation p.P303Q 0.35 deleterious(0) probably_damaging(0.993) TCGA-EB-A42Z-01 19 5684800 5684800 C T HSD11B1L Intron 0.39 TCGA-EB-A42Z-01 19 57175014 57175014 C T ZNF835 Missense_Mutation p.G518E 0.43 deleterious_low_confidence(0) benign(0.044) TCGA-EB-A42Z-01 19 9048836 9048836 C T MUC16 Missense_Mutation p.G10932E 0.39 benign(0) TCGA-EB-A42Z-01 1 150255600 150255600 C T C1orf51 5'UTR 0.30 TCGA-EB-A42Z-01 1 151316245 151316245 G A RFX5 Silent p.I223I 0.42 TCGA-EB-A42Z-01 1 157659663 157659663 C T FCRL3 Missense_Mutation p.G579R 0.43 deleterious(0.03) probably_damaging(0.924) TCGA-EB-A42Z-01 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.45 deleterious(0.05) benign(0.049) TCGA-EB-A42Z-01 1 171086346 171086346 C T FMO3 Missense_Mutation p.P455S 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 1 176659520 176659520 C T PAPPA2 Silent p.F795F 0.42 TCGA-EB-A42Z-01 1 200959121 200959121 C T KIF21B Silent p.L1027L 0.42 TCGA-EB-A42Z-01 1 234536942 234536942 C T TARBP1 Silent p.K1352K 0.67 TCGA-EB-A42Z-01 1 249110787 249110787 C T SH3BP5L Silent p.G107G 0.08 TCGA-EB-A42Z-01 1 40981102 40981102 C T EXO5 Missense_Mutation p.H296Y 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A42Z-01 1 62676069 62676069 C T L1TD1 Silent p.P541P 0.30 TCGA-EB-A42Z-01 20 10273547 10273547 G A SNAP25 Intron 0.43 TCGA-EB-A42Z-01 20 2464742 2464742 G A ZNF343 Missense_Mutation p.R289C 0.48 deleterious(0) probably_damaging(0.912) TCGA-EB-A42Z-01 20 31583499 31583499 C T SUN5 Missense_Mutation p.E154K 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A42Z-01 20 8717816 8717816 G A PLCB1 Missense_Mutation p.E729K 0.35 deleterious(0) probably_damaging(0.957) TCGA-EB-A42Z-01 21 30330842 30330842 C T LTN1 Silent p.L917L 0.32 TCGA-EB-A42Z-01 21 46021655 46021655 C T KRTAP10-7 3'UTR 0.41 TCGA-EB-A42Z-01 22 23114985 23114985 G A IGLV3-12 Missense_Mutation p.G86E 0.07 deleterious(0.03) benign(0.397) TCGA-EB-A42Z-01 22 26400778 26400778 C T MYO18B Missense_Mutation p.P2143S 0.36 deleterious(0.03) benign(0.204) TCGA-EB-A42Z-01 22 29999986 29999986 C T NF2 5'UTR 0.53 TCGA-EB-A42Z-01 22 30416327 30416327 C T MTMR3 Silent p.P893P 0.45 TCGA-EB-A42Z-01 22 31266492 31266492 C T OSBP2 Silent p.S310S 0.42 TCGA-EB-A42Z-01 22 37485814 37485814 G A TMPRSS6 Missense_Mutation p.R223C 0.21 deleterious(0) possibly_damaging(0.88) TCGA-EB-A42Z-01 22 37903859 37903859 C T CARD10 Missense_Mutation p.E390K 0.42 deleterious(0) benign(0.017) TCGA-EB-A42Z-01 22 40080504 40080504 G A CACNA1I Splice_Site p.X2009_splice 0.45 TCGA-EB-A42Z-01 22 42388750 42388750 C A SEPT3 Missense_Mutation p.P283Q 0.42 tolerated(0.05) possibly_damaging(0.624) TCGA-EB-A42Z-01 22 46641032 46641032 G A CDPF1 Missense_Mutation p.A110V 0.36 tolerated(0.3) benign(0.004) TCGA-EB-A42Z-01 2 141110585 141110585 C T LRP1B Missense_Mutation p.G3863R 0.44 probably_damaging(0.988) TCGA-EB-A42Z-01 2 167055739 167055739 C T SCN9A Missense_Mutation p.D1793N 0.39 tolerated(0.09) benign(0.173) TCGA-EB-A42Z-01 2 182783380 182783380 C T SSFA2 Missense_Mutation p.S948L 0.39 tolerated(0.08) benign(0.036) TCGA-EB-A42Z-01 2 183792896 183792896 C A NCKAP1 Missense_Mutation p.L1049F 0.31 deleterious(0.02) benign(0.041) TCGA-EB-A42Z-01 2 220100289 220100289 C T ANKZF1 Silent p.Y595Y 0.46 TCGA-EB-A42Z-01 2 238950059 238950059 C T UBE2F 3'UTR 0.29 TCGA-EB-A42Z-01 2 25965349 25965349 G A ASXL2 Missense_Mutation p.P1286L 0.54 deleterious(0) possibly_damaging(0.77) TCGA-EB-A42Z-01 2 27529115 27529115 C T TRIM54 Missense_Mutation p.R343W 0.41 deleterious(0) possibly_damaging(0.888) TCGA-EB-A42Z-01 2 30955377 30955377 C G CAPN13 Missense_Mutation p.R618S 0.28 deleterious(0) probably_damaging(0.978) TCGA-EB-A42Z-01 2 74317022 74317022 A T TET3 Splice_Site p.X828_splice 0.41 TCGA-EB-A42Z-01 2 74459660 74459660 C T SLC4A5 Missense_Mutation p.D904N 0.42 tolerated(1) probably_damaging(0.928) TCGA-EB-A42Z-01 2 97278218 97278218 A T KANSL3 Missense_Mutation p.V332E 0.46 deleterious(0) possibly_damaging(0.631) TCGA-EB-A42Z-01 3 121001176 121001176 C T STXBP5L Missense_Mutation p.S725F 0.37 tolerated(0.11) benign(0.013) TCGA-EB-A42Z-01 3 121341061 121341061 G A FBXO40 Missense_Mutation p.G262D 0.48 tolerated(0.21) benign(0.003) TCGA-EB-A42Z-01 3 121980683 121980683 C T CASR Silent p.I267I 0.43 TCGA-EB-A42Z-01 3 124113992 124113992 G A KALRN Nonsense_Mutation p.W656* 0.50 TCGA-EB-A42Z-01 3 12613781 12613781 C T MKRN2 Missense_Mutation p.A184V 0.36 deleterious(0.02) benign(0.143) TCGA-EB-A42Z-01 3 12978144 12978144 G A IQSEC1 Silent p.A138A 0.47 TCGA-EB-A42Z-01 3 139237310 139237310 C T RBP1 Missense_Mutation p.E165K 0.39 tolerated(0.58) possibly_damaging(0.716) TCGA-EB-A42Z-01 3 139297755 139297755 C T NMNAT3 Silent p.E47E 0.39 TCGA-EB-A42Z-01 3 140785560 140785560 A G SPSB4 Missense_Mutation p.K205R 0.46 tolerated(0.19) benign(0.102) TCGA-EB-A42Z-01 3 194063279 194063279 C T CPN2 Silent p.T51T 0.34 TCGA-EB-A42Z-01 3 195451735 195451735 C T MUC20 Silent p.S87S 0.19 TCGA-EB-A42Z-01 3 42244228 42244228 C T TRAK1 Silent p.I576I 0.41 TCGA-EB-A42Z-01 3 44609471 44609471 T G ZKSCAN7 Silent p.T220T 0.17 TCGA-EB-A42Z-01 3 49020365 49020365 G A ARIH2 Missense_Mutation p.E455K 0.35 deleterious(0) probably_damaging(0.986) TCGA-EB-A42Z-01 3 51264790 51264790 C T DOCK3 Missense_Mutation p.P485L 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 3 93755394 93755394 A C ARL13B Splice_Site p.X163_splice 0.41 TCGA-EB-A42Z-01 4 140394000 140394000 T C RAB33B Missense_Mutation p.L137P 0.41 tolerated(0.06) benign(0.012) TCGA-EB-A42Z-01 4 41652434 41652434 G A LIMCH1 Missense_Mutation p.G564R 0.29 deleterious(0.01) benign(0.32) TCGA-EB-A42Z-01 4 55138642 55138642 C T PDGFRA Missense_Mutation p.T440M 0.38 tolerated(1) benign(0.003) TCGA-EB-A42Z-01 4 5754592 5754592 G A EVC Silent p.A376A 0.38 TCGA-EB-A42Z-01 4 75937920 75937920 C T PARM1 Missense_Mutation p.S110L 0.40 tolerated(0.75) benign(0.004) TCGA-EB-A42Z-01 4 84337916 84338121 4:84337916-84338121 ATCTAGT HELQ Splice_Site p.X1022_splice 0.08 TCGA-EB-A42Z-01 5 121787063 121787063 G A SNCAIP Missense_Mutation p.G841S 0.31 tolerated(0.16) benign(0.023) TCGA-EB-A42Z-01 5 140530310 140530310 G A PCDHB6 Missense_Mutation p.D158N 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 5 156381609 156381609 C T TIMD4 Missense_Mutation p.G73R 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 5 73205720 73205720 G A ARHGEF28 Missense_Mutation p.E1549K 0.36 tolerated(0.19) possibly_damaging(0.554) TCGA-EB-A42Z-01 6 145119000 145119000 A T UTRN Missense_Mutation p.D3040V 0.38 deleterious(0) probably_damaging(0.997) TCGA-EB-A42Z-01 6 30314530 30314530 C T RPP21 Silent p.S144S 0.76 TCGA-EB-A42Z-01 6 55266715 55266715 C T GFRAL 3'UTR 0.45 TCGA-EB-A42Z-01 6 55266758 55266758 C A GFRAL 3'UTR 0.43 TCGA-EB-A42Z-01 6 84649789 84649789 G C CYB5R4 Missense_Mutation p.V375L 0.37 tolerated(0.14) benign(0.047) TCGA-EB-A42Z-01 6 84649805 84649805 G A CYB5R4 Missense_Mutation p.G380D 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 7 100013927 100013927 C T ZCWPW1 Splice_Site p.X211_splice 0.50 TCGA-EB-A42Z-01 7 107262588 107262588 A G BCAP29 3'UTR 0.21 TCGA-EB-A42Z-01 7 115581000 115581000 G A TFEC Intron 0.25 TCGA-EB-A42Z-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.62 deleterious(0) probably_damaging(0.967) TCGA-EB-A42Z-01 7 141799531 141799531 A C MGAM Missense_Mutation p.H1727P 0.35 tolerated(0.17) benign(0.097) TCGA-EB-A42Z-01 7 142641808 142641808 C T KEL Silent p.A445A 0.53 TCGA-EB-A42Z-01 7 143929631 143929631 G A OR2A42 Silent p.L102L 0.53 TCGA-EB-A42Z-01 7 38402741 38402741 C T TRGV2 Silent p.T26T 0.50 TCGA-EB-A42Z-01 7 6196639 6196651 GGATGGAAAGCAG - USP42 Frame_Shift_Del p.E1301Tfs*23 0.31 TCGA-EB-A42Z-01 7 93540176 93540176 C T GNGT1 Silent p.I57I 0.27 TCGA-EB-A42Z-01 8 10465565 10465565 C T RP1L1 Missense_Mutation p.E2015K 0.73 unknown(0) TCGA-EB-A42Z-01 8 109252269 109252269 G A EIF3E Silent p.L81L 0.29 TCGA-EB-A42Z-01 8 121262884 121262884 G A COL14A1 Silent p.V877V 0.29 TCGA-EB-A42Z-01 8 123965933 123965933 C T ZHX2 Missense_Mutation p.P728L 0.27 tolerated(0.26) benign(0.001) TCGA-EB-A42Z-01 8 15978067 15978067 C T MSR1 Missense_Mutation p.G361E 0.78 deleterious(0) probably_damaging(1) TCGA-EB-A42Z-01 8 27328671 27328671 G A CHRNA2 5'UTR 0.69 TCGA-EB-A42Z-01 8 36666254 36666254 C T KCNU1 Silent p.S225S 0.62 TCGA-EB-A42Z-01 8 70617301 70617301 A C SLCO5A1 Missense_Mutation p.I529M 0.44 deleterious(0.01) benign(0.439) TCGA-EB-A42Z-01 9 108123570 108123570 C T SLC44A1 Missense_Mutation p.R287W 0.44 deleterious(0) possibly_damaging(0.513) TCGA-EB-A42Z-01 9 118969804 118969804 C T PAPPA Silent p.F516F 0.28 TCGA-EB-A42Z-01 9 131715049 131715049 C T RP11-101E3.5 Intron 0.49 TCGA-EB-A42Z-01 9 131765234 131765234 C A NUP188 Missense_Mutation p.H1426N 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A42Z-01 9 135458121 135458121 G A BARHL1 5'UTR 0.38 TCGA-EB-A42Z-01 9 138594141 138594141 G T KCNT1 Missense_Mutation p.V13F 0.39 deleterious_low_confidence(0.01) benign(0.028) TCGA-EB-A42Z-01 X 105279124 105279124 C T SERPINA7 Nonsense_Mutation p.W292* 0.82 TCGA-EB-A42Z-01 X 151138714 151138714 G A GABRE Missense_Mutation p.R73C 0.84 deleterious(0.02) possibly_damaging(0.679) TCGA-EB-A42Z-01 X 55028697 55028697 C T APEX2 Silent p.F85F 0.92 TCGA-EB-A42Z-01 X 71360146 71360146 C T NHSL2 Silent p.L916L 0.78 TCGA-EB-A42Z-01 X 83357100 83357100 C T RPS6KA6 Missense_Mutation p.G574E 0.24 tolerated(0.06) benign(0.102) TCGA-EB-A430-01 10 105174066 105174066 C T PDCD11 Silent p.I450I 0.48 TCGA-EB-A430-01 10 116048750 116048750 G A VWA2 Missense_Mutation p.V542I 0.46 deleterious(0.04) possibly_damaging(0.901) TCGA-EB-A430-01 10 131959074 131959074 C T GLRX3 Silent p.I97I 0.66 TCGA-EB-A430-01 10 16877063 16877063 G A CUBN Missense_Mutation p.H3438Y 0.40 tolerated(0.28) benign(0.097) TCGA-EB-A430-01 10 17195400 17195400 G A TRDMT1 Intron 0.46 TCGA-EB-A430-01 10 23482639 23482639 C T PTF1A Missense_Mutation p.P264L 0.32 deleterious(0.01) unknown(0) TCGA-EB-A430-01 10 26243883 26243883 G A MYO3A Silent p.G83G 0.33 TCGA-EB-A430-01 10 28023530 28023530 C T MKX Silent p.L231L 0.34 TCGA-EB-A430-01 10 28024150 28024150 C T MKX Missense_Mutation p.D168N 0.35 tolerated(0.07) probably_damaging(0.998) TCGA-EB-A430-01 10 28224012 28224012 C T ARMC4 Missense_Mutation p.G808R 0.31 deleterious(0.05) possibly_damaging(0.903) TCGA-EB-A430-01 10 30318098 30318098 C T KIAA1462 Missense_Mutation p.E327K 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A430-01 10 37430723 37430723 G A ANKRD30A Missense_Mutation p.E244K 0.25 tolerated(0.2) possibly_damaging(0.636) TCGA-EB-A430-01 10 43596108 43596108 C T RET Missense_Mutation p.T92I 0.39 deleterious_low_confidence(0) benign(0.233) TCGA-EB-A430-01 10 45799890 45799890 G A OR13A1 Intron 0.33 TCGA-EB-A430-01 10 50857568 50857568 G A CHAT Missense_Mutation p.R466K 0.33 tolerated(1) benign(0.006) TCGA-EB-A430-01 10 61827755 61827755 G A ANK3 Missense_Mutation p.P4086L 0.30 probably_damaging(0.997) TCGA-EB-A430-01 10 61830360 61830360 A C ANK3 Missense_Mutation p.L3427V 0.35 probably_damaging(0.952) TCGA-EB-A430-01 10 70703013 70703013 G A DDX50 Silent p.Q645Q 0.28 TCGA-EB-A430-01 11 102818663 102818663 C T MMP13 Missense_Mutation p.D390N 0.52 tolerated(0.66) benign(0.001) TCGA-EB-A430-01 11 1083069 1083069 G A MUC2 Missense_Mutation p.D657N 0.27 probably_damaging(0.962) TCGA-EB-A430-01 11 113661650 113661650 C T ATF4P4 RNA 0.25 TCGA-EB-A430-01 11 118374333 118374333 C T KMT2A Missense_Mutation p.P2576S 0.58 benign(0.079) TCGA-EB-A430-01 11 128332407 128332407 C T ETS1 Missense_Mutation p.G436D 0.55 deleterious(0) probably_damaging(0.956) TCGA-EB-A430-01 11 30255117 30255117 G A FSHB Missense_Mutation p.D54N 0.36 tolerated(0.05) possibly_damaging(0.523) TCGA-EB-A430-01 11 45832452 45832452 C T SLC35C1 Missense_Mutation p.P221S 0.45 deleterious(0.04) possibly_damaging(0.759) TCGA-EB-A430-01 11 45891085 45891085 C T CRY2 Missense_Mutation p.S325F 0.19 deleterious(0) probably_damaging(0.995) TCGA-EB-A430-01 11 46897091 46897091 C T LRP4 Missense_Mutation p.G1281S 0.18 tolerated(0.9) benign(0.001) TCGA-EB-A430-01 11 47711663 47711663 G A AGBL2 Silent p.F532F 0.21 TCGA-EB-A430-01 11 48346845 48346845 C T OR4C3 Missense_Mutation p.S118F 0.06 deleterious(0.03) benign(0.178) TCGA-EB-A430-01 11 5067968 5067968 T A OR52J3 Silent p.I71I 0.19 TCGA-EB-A430-01 11 5275535 5275535 G A HBG2 Missense_Mutation p.P101L 0.12 deleterious(0) possibly_damaging(0.79) TCGA-EB-A430-01 11 5461845 5461845 C T OR51I1 Silent p.E300E 0.47 TCGA-EB-A430-01 11 55339669 55339669 G A OR4C16 Silent p.K22K 0.37 TCGA-EB-A430-01 11 56431966 56431966 G A OR5AR1 Missense_Mutation p.D269N 0.42 tolerated(0.06) benign(0.026) TCGA-EB-A430-01 11 5862259 5862259 G A OR52E6 Missense_Mutation p.P290L 0.56 deleterious(0.01) possibly_damaging(0.894) TCGA-EB-A430-01 11 5968604 5968604 T A OR56A3 Missense_Mutation p.S10T 0.72 tolerated(0.45) benign(0.002) TCGA-EB-A430-01 11 61205222 61205222 A G SDHAF2 Silent p.P54P 0.18 TCGA-EB-A430-01 11 6129969 6129969 C T OR56B4 3'UTR 0.52 TCGA-EB-A430-01 11 62430766 62430766 C T C11orf48 Missense_Mutation p.A235T 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.908) TCGA-EB-A430-01 11 62568807 62568807 G A NXF1 Silent p.I264I 0.27 TCGA-EB-A430-01 11 62620469 62620469 G A SLC3A2 5'Flank 0.40 TCGA-EB-A430-01 11 64022912 64022912 C T PLCB3 Missense_Mutation p.P171L 0.21 deleterious(0) probably_damaging(0.93) TCGA-EB-A430-01 11 66191876 66191876 C T NPAS4 Silent p.T505T 0.41 TCGA-EB-A430-01 11 75146533 75146533 G A GDPD5 3'UTR 0.21 TCGA-EB-A430-01 11 76062219 76062219 G A PRKRIR Missense_Mutation p.P659S 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A430-01 11 8752548 8752548 C T ST5 Missense_Mutation p.A97T 0.05 tolerated_low_confidence(0.65) benign(0) TCGA-EB-A430-01 11 89891358 89891358 G A NAALAD2 Missense_Mutation p.R281Q 0.50 tolerated(0.18) benign(0) TCGA-EB-A430-01 12 101005784 101005784 C T GAS2L3 Missense_Mutation p.P104S 0.34 deleterious(0.02) benign(0.082) TCGA-EB-A430-01 12 10223798 10223798 G A CLEC1A 3'UTR 0.31 TCGA-EB-A430-01 12 10342740 10342740 T G TMEM52B 3'UTR 0.34 TCGA-EB-A430-01 12 104373722 104373722 A T TDG Nonsense_Mutation p.K94* 0.07 TCGA-EB-A430-01 12 107083118 107083118 T C RFX4 Silent p.T224T 0.19 TCGA-EB-A430-01 12 111785936 111785936 C T CUX2 Missense_Mutation p.S1423F 0.35 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-EB-A430-01 12 113532927 113532927 C T DTX1 Silent p.F489F 0.44 TCGA-EB-A430-01 12 121600297 121600297 C T P2RX7 Silent p.P169P 0.44 TCGA-EB-A430-01 12 122716622 122716622 G A VPS33A 3'UTR 0.31 TCGA-EB-A430-01 12 130855797 130855797 A C PIWIL1 Missense_Mutation p.N800H 0.36 tolerated(0.1) possibly_damaging(0.748) TCGA-EB-A430-01 12 13906468 13906468 C T GRIN2B Missense_Mutation p.D265N 0.34 tolerated(1) probably_damaging(0.982) TCGA-EB-A430-01 12 21971084 21971084 C G ABCC9 Silent p.T1257T 0.26 TCGA-EB-A430-01 12 30881671 30881671 T G CAPRIN2 Missense_Mutation p.I565L 0.28 tolerated(0.55) benign(0.01) TCGA-EB-A430-01 12 43826592 43826592 C T ADAMTS20 Missense_Mutation p.E915K 0.40 tolerated(0.11) benign(0.067) TCGA-EB-A430-01 12 48723511 48723511 G A H1FNT Missense_Mutation p.R146K 0.29 tolerated(0.32) benign(0.14) TCGA-EB-A430-01 12 48738482 48738482 G A ZNF641 Silent p.P154P 0.38 TCGA-EB-A430-01 12 48884616 48884616 C T C12orf54 Nonsense_Mutation p.R64* 0.43 TCGA-EB-A430-01 12 54964031 54964031 G A PDE1B Missense_Mutation p.D162N 0.31 tolerated(0.07) benign(0.048) TCGA-EB-A430-01 12 7639546 7639546 G A CD163 Missense_Mutation p.S696L 0.34 deleterious(0.01) benign(0.052) TCGA-EB-A430-01 12 7843299 7843299 A G GDF3 Silent p.G90G 0.43 TCGA-EB-A430-01 12 81613796 81613796 G A ACSS3 Missense_Mutation p.M485I 0.29 tolerated(0.05) benign(0.11) TCGA-EB-A430-01 12 8688796 8688796 G A CLEC4E Silent p.F126F 0.21 TCGA-EB-A430-01 12 91358079 91358079 C T EPYC Missense_Mutation p.E275K 0.29 tolerated(0.07) benign(0.087) TCGA-EB-A430-01 12 91363837 91363837 C T EPYC Missense_Mutation p.R261Q 0.34 tolerated(0.31) benign(0.009) TCGA-EB-A430-01 12 96688890 96688901 TACAGAAACAGC - CDK17 Splice_Site p.X292_splice 0.16 TCGA-EB-A430-01 13 111368055 111368055 C T ING1 Missense_Mutation p.P89S 0.31 tolerated_low_confidence(0.37) benign(0) TCGA-EB-A430-01 13 111368056 111368056 C T ING1 Missense_Mutation p.P89L 0.33 deleterious_low_confidence(0.03) benign(0) TCGA-EB-A430-01 13 29600221 29600221 G A MTUS2 Silent p.G472G 0.27 TCGA-EB-A430-01 13 45563313 45563313 G A NUFIP1 Missense_Mutation p.P87S 0.36 deleterious_low_confidence(0.02) benign(0.073) TCGA-EB-A430-01 13 49762735 49762735 G A FNDC3A Missense_Mutation p.R637Q 0.22 deleterious(0.01) possibly_damaging(0.79) TCGA-EB-A430-01 13 52676362 52676362 G T NEK5 Missense_Mutation p.P226T 0.34 tolerated(0.19) possibly_damaging(0.458) TCGA-EB-A430-01 13 76382001 76382001 G A LMO7 Missense_Mutation p.E295K 0.17 tolerated(0.05) benign(0.077) TCGA-EB-A430-01 13 76415947 76415947 C G LMO7 Missense_Mutation p.Q1054E 0.20 tolerated(0.27) possibly_damaging(0.519) TCGA-EB-A430-01 13 84453936 84453936 G A SLITRK1 Silent p.F569F 0.29 TCGA-EB-A430-01 14 101005380 101005380 C T BEGAIN Silent p.P236P 0.32 TCGA-EB-A430-01 14 106109970 106109970 G A IGHG2 Silent p.S216S 0.32 TCGA-EB-A430-01 14 20020123 20020123 G A POTEM Missense_Mutation p.P33L 0.26 deleterious_low_confidence(0.04) probably_damaging(0.981) TCGA-EB-A430-01 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.26 deleterious(0) possibly_damaging(0.796) TCGA-EB-A430-01 14 20871992 20871992 G A TEP1 Missense_Mutation p.R362C 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 14 21488717 21488717 C T NDRG2 Missense_Mutation p.G165S 0.28 tolerated(0.05) possibly_damaging(0.556) TCGA-EB-A430-01 14 23817427 23817427 C A SLC22A17 Nonsense_Mutation p.E261* 0.40 TCGA-EB-A430-01 14 24788604 24788604 G A ADCY4 Silent p.I924I 0.31 TCGA-EB-A430-01 14 39703289 39703289 C T MIA2 5'UTR 0.15 TCGA-EB-A430-01 14 45414960 45414960 G A KLHL28 Missense_Mutation p.P58S 0.36 tolerated(0.12) probably_damaging(0.955) TCGA-EB-A430-01 14 59730346 59730346 G A DAAM1 Missense_Mutation p.E51K 0.32 deleterious(0.01) unknown(0) TCGA-EB-A430-01 14 61924338 61924338 C T PRKCH Silent p.L407L 0.35 TCGA-EB-A430-01 14 63269214 63269214 C T KCNH5 Missense_Mutation p.R552Q 0.27 tolerated(0.06) possibly_damaging(0.852) TCGA-EB-A430-01 14 64854953 64854953 G A MTHFD1 5'Flank 0.38 TCGA-EB-A430-01 14 65289681 65289681 C T SPTB Silent p.R44R 0.40 TCGA-EB-A430-01 14 67567606 67567606 G A GPHN Missense_Mutation p.G424E 0.36 deleterious(0.01) probably_damaging(1) TCGA-EB-A430-01 14 71197432 71197432 G A MAP3K9 Missense_Mutation p.R1008W 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 14 73959321 73959321 G T HEATR4 Intron 0.37 TCGA-EB-A430-01 14 74060573 74060573 G A ACOT4 Missense_Mutation p.E209K 0.20 deleterious(0.03) probably_damaging(1) TCGA-EB-A430-01 14 76231053 76231053 T C TTLL5 Missense_Mutation p.L549P 0.40 deleterious(0) probably_damaging(0.933) TCGA-EB-A430-01 14 79933704 79933704 G C NRXN3 Missense_Mutation p.D762H 0.39 deleterious(0) unknown(0) TCGA-EB-A430-01 14 81609793 81609793 G A TSHR Missense_Mutation p.G464E 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 14 88693758 88693758 G A KCNK10 Silent p.I214I 0.37 TCGA-EB-A430-01 14 89154685 89154685 C T EML5 Missense_Mutation p.R891K 0.30 tolerated(1) benign(0.001) TCGA-EB-A430-01 14 90651311 90651311 G A KCNK13 Missense_Mutation p.M397I 0.34 deleterious(0.01) possibly_damaging(0.459) TCGA-EB-A430-01 15 20488755 20488755 G A CHEK2P2 RNA 0.16 TCGA-EB-A430-01 15 20495390 20495390 C T CHEK2P2 RNA 0.14 TCGA-EB-A430-01 15 24921036 24921036 T C NPAP1 Missense_Mutation p.F8L 0.65 tolerated_low_confidence(1) benign(0.294) TCGA-EB-A430-01 15 25315651 25315651 C T SNORD116-8 RNA 0.28 TCGA-EB-A430-01 15 43045290 43045290 C T TTBK2 Silent p.E718E 0.31 TCGA-EB-A430-01 15 50534545 50534545 A G HDC Missense_Mutation p.I634T 0.37 tolerated_low_confidence(0.25) benign(0.027) TCGA-EB-A430-01 15 54025254 54025254 C T WDR72 Silent p.T31T 0.36 TCGA-EB-A430-01 15 66824698 66824698 T C ZWILCH Silent p.I423I 0.39 TCGA-EB-A430-01 15 74181422 74181422 T - TBC1D21 Frame_Shift_Del p.L331* 0.21 TCGA-EB-A430-01 15 74326804 74326804 C T PML Intron 0.27 TCGA-EB-A430-01 15 74326805 74326805 C T PML Intron 0.27 TCGA-EB-A430-01 15 74468143 74468143 C T ISLR Missense_Mutation p.P315L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A430-01 15 74473797 74473797 C T STRA6 Missense_Mutation p.R547Q 0.29 deleterious(0.03) possibly_damaging(0.761) TCGA-EB-A430-01 15 75705148 75705148 G A SIN3A Missense_Mutation p.P238S 0.46 tolerated(0.4) benign(0.003) TCGA-EB-A430-01 15 86278331 86278331 G A AKAP13 Missense_Mutation p.R2468K 0.32 deleterious(0.03) probably_damaging(0.937) TCGA-EB-A430-01 15 90280815 90280815 T A WDR93 Missense_Mutation p.F540L 0.41 deleterious(0.03) probably_damaging(0.97) TCGA-EB-A430-01 16 11369782 11369782 C T PRM2 Missense_Mutation p.R95K 0.38 unknown(0) TCGA-EB-A430-01 16 1262038 1262038 C T CACNA1H Silent p.V1553V 0.30 TCGA-EB-A430-01 16 15501843 15501843 C T MPV17L Silent p.V155V 0.30 TCGA-EB-A430-01 16 4466526 4466526 G A CORO7 5'UTR 0.28 TCGA-EB-A430-01 16 4466527 4466527 G A CORO7 5'UTR 0.28 TCGA-EB-A430-01 16 47143405 47143405 G A NETO2 Missense_Mutation p.S291F 0.58 tolerated(0.07) benign(0.064) TCGA-EB-A430-01 16 51175273 51175273 G A SALL1 Missense_Mutation p.S287F 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A430-01 16 67262476 67262476 G A TMEM208 Missense_Mutation p.E81K 0.28 deleterious(0.02) possibly_damaging(0.627) TCGA-EB-A430-01 16 74443458 74443458 G A CLEC18B Silent p.I440I 0.17 TCGA-EB-A430-01 16 90124441 90124441 C T PRDM7 3'UTR 0.57 TCGA-EB-A430-01 17 10398311 10398311 C T MYH1 Silent p.L1801L 0.61 TCGA-EB-A430-01 17 10428151 10428151 C T MYH2 Missense_Mutation p.E1632K 0.49 deleterious(0) probably_damaging(0.986) TCGA-EB-A430-01 17 11666799 11666799 G A DNAH9 Silent p.Q2346Q 0.58 TCGA-EB-A430-01 17 11687031 11687031 C T DNAH9 Missense_Mutation p.T2596M 0.53 probably_damaging(0.997) TCGA-EB-A430-01 17 18882973 18882973 C T FAM83G Missense_Mutation p.R235Q 0.59 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 17 26822711 26822711 C T SLC13A2 Silent p.T498T 0.39 TCGA-EB-A430-01 17 26883892 26883892 G A PIGS Missense_Mutation p.P345S 0.45 tolerated(0.08) benign(0.292) TCGA-EB-A430-01 17 3448530 3448530 G A TRPV3 Missense_Mutation p.P52L 0.65 deleterious(0.04) possibly_damaging(0.56) TCGA-EB-A430-01 17 41063317 41063317 C T G6PC Silent p.S316S 0.29 TCGA-EB-A430-01 17 41719219 41719219 G A MEOX1 3'UTR 0.35 TCGA-EB-A430-01 17 42800254 42800254 C T DBF4B Missense_Mutation p.S30F 0.28 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-EB-A430-01 17 43347890 43347890 G A MAP3K14-AS1 3'Flank 0.36 TCGA-EB-A430-01 17 46608194 46608194 G A HOXB1 Missense_Mutation p.H25Y 0.39 deleterious(0.04) benign(0.419) TCGA-EB-A430-01 17 47004478 47004478 T C UBE2Z Silent p.H349H 0.39 TCGA-EB-A430-01 17 47299945 47299945 G A ABI3 Silent p.K323K 0.33 TCGA-EB-A430-01 17 56435334 56435334 G A RNF43 Silent p.S601S 0.27 TCGA-EB-A430-01 17 56435335 56435335 G T RNF43 Missense_Mutation p.S601Y 0.27 tolerated_low_confidence(0.33) benign(0.004) TCGA-EB-A430-01 17 56729236 56729236 G A TEX14 Missense_Mutation p.L43F 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 17 60742008 60742008 C T MRC2 Missense_Mutation p.P73L 0.41 tolerated(0.06) benign(0.021) TCGA-EB-A430-01 17 65988212 65988212 C T C17orf58 Silent p.R37R 0.32 TCGA-EB-A430-01 17 66982433 66982433 G A ABCA9 Silent p.P1360P 0.38 TCGA-EB-A430-01 17 71389811 71389811 C T SDK2 Silent p.Q1262Q 0.41 TCGA-EB-A430-01 17 7557429 7557429 G A ATP1B2 Missense_Mutation p.E136K 0.62 tolerated(0.69) benign(0.047) TCGA-EB-A430-01 17 78280057 78280057 C T RNF213 Missense_Mutation p.S739F 0.17 benign(0.054) TCGA-EB-A430-01 17 79409762 79409762 C T RP11-1055B8.7 Missense_Mutation p.P463S 0.41 benign(0.046) TCGA-EB-A430-01 17 79662080 79662080 C T HGS Missense_Mutation p.P368S 0.37 tolerated(0.12) probably_damaging(0.979) TCGA-EB-A430-01 17 79686870 79686870 C T SLC25A10 Missense_Mutation p.H248Y 0.32 tolerated(0.14) benign(0.18) TCGA-EB-A430-01 17 9536216 9536216 G A WDR16 Missense_Mutation p.G396S 0.59 deleterious(0.02) possibly_damaging(0.738) TCGA-EB-A430-01 18 21121299 21121299 G A NPC1 Missense_Mutation p.L782F 0.25 deleterious(0) benign(0.169) TCGA-EB-A430-01 18 21533018 21533018 G A LAMA3 Silent p.Q3267Q 0.35 TCGA-EB-A430-01 18 25568558 25568558 A G CDH2 Silent p.A557A 0.45 TCGA-EB-A430-01 18 31537312 31537312 A C NOL4 Missense_Mutation p.M469R 0.28 tolerated(0.07) benign(0.013) TCGA-EB-A430-01 18 43534617 43534617 C T EPG5 Missense_Mutation p.E251K 0.32 tolerated(0.12) probably_damaging(0.953) TCGA-EB-A430-01 18 51820709 51820709 G C POLI Missense_Mutation p.D699H 0.14 deleterious_low_confidence(0.03) benign(0.021) TCGA-EB-A430-01 18 57136744 57136744 G A CCBE1 Missense_Mutation p.R121W 0.39 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 18 61171037 61171037 C T SERPINB5 3'UTR 0.33 TCGA-EB-A430-01 18 61322719 61322719 G A SERPINB3 3'UTR 0.24 TCGA-EB-A430-01 18 63430033 63430033 T G CDH7 5'UTR 0.21 TCGA-EB-A430-01 18 70450945 70450945 C T NETO1 Missense_Mutation p.R279Q 0.31 tolerated(0.05) benign(0.2) TCGA-EB-A430-01 18 7231993 7231993 G A LRRC30 Missense_Mutation p.G286E 0.29 tolerated(0.26) probably_damaging(1) TCGA-EB-A430-01 18 72999314 72999314 A G TSHZ1 Missense_Mutation p.N606S 0.34 tolerated(1) benign(0) TCGA-EB-A430-01 19 12976590 12976590 T C MAST1 Missense_Mutation p.S622P 0.22 deleterious(0) possibly_damaging(0.664) TCGA-EB-A430-01 19 14749103 14749103 G A EMR3 Missense_Mutation p.A433V 0.21 deleterious(0) possibly_damaging(0.538) TCGA-EB-A430-01 19 16060344 16060344 A C OR10H4 Missense_Mutation p.H176P 0.25 tolerated(0.09) possibly_damaging(0.892) TCGA-EB-A430-01 19 16345240 16345240 C T AP1M1 Silent p.T434T 0.67 TCGA-EB-A430-01 19 17922930 17922930 G A B3GNT3 Silent p.%3D 0.63 TCGA-EB-A430-01 19 18710534 18710534 C T CRLF1 Missense_Mutation p.G80R 0.42 tolerated(0.09) probably_damaging(1) TCGA-EB-A430-01 19 20807720 20807720 G A ZNF626 Silent p.A321A 0.38 TCGA-EB-A430-01 19 21991238 21991238 C A ZNF43 Missense_Mutation p.G534V 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-EB-A430-01 19 2214636 2214636 T C DOT1L Intron 0.17 TCGA-EB-A430-01 19 22154808 22154808 A G ZNF208 Missense_Mutation p.F1010L 0.29 deleterious(0) probably_damaging(0.925) TCGA-EB-A430-01 19 22375890 22375890 G A ZNF676 Silent p.L20L 0.36 TCGA-EB-A430-01 19 22939966 22939966 G A ZNF99 3'Flank 0.12 TCGA-EB-A430-01 19 33517487 33517487 G A RHPN2 Silent p.F79F 0.41 TCGA-EB-A430-01 19 35523450 35523450 G A SCN1B Missense_Mutation p.G20D 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A430-01 19 37416129 37416129 C T ZNF568 Missense_Mutation p.S35F 0.36 tolerated(0.71) benign(0) TCGA-EB-A430-01 19 38573667 38573667 C T SIPA1L3 Missense_Mutation p.R488W 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A430-01 19 39006788 39006788 C T RYR1 Silent p.L3206L 0.50 TCGA-EB-A430-01 19 39915142 39915142 C T PLEKHG2 Silent p.I1123I 0.25 TCGA-EB-A430-01 19 40395860 40395860 T G FCGBP Missense_Mutation p.T2513P 0.14 benign(0.149) TCGA-EB-A430-01 19 42085847 42085847 G A CEACAM21 Missense_Mutation p.R189K 0.30 tolerated(0.07) possibly_damaging(0.838) TCGA-EB-A430-01 19 42132129 42132129 G A CEACAM4 Silent p.I90I 0.18 TCGA-EB-A430-01 19 4217174 4217174 G A ANKRD24 Missense_Mutation p.E673K 0.30 tolerated_low_confidence(0.07) benign(0.007) TCGA-EB-A430-01 19 4298091 4298091 C T TMIGD2 Missense_Mutation p.D100N 0.69 tolerated(0.18) probably_damaging(0.945) TCGA-EB-A430-01 19 43575909 43575909 C A PSG2 Missense_Mutation p.V303F 0.40 deleterious(0.01) benign(0.202) TCGA-EB-A430-01 19 47861238 47861238 G T DHX34 Missense_Mutation p.R378L 0.27 deleterious(0) possibly_damaging(0.72) TCGA-EB-A430-01 19 49993931 49993931 C T RPL13A Intron 0.19 TCGA-EB-A430-01 19 51729165 51729165 G A CD33 Silent p.P175P 0.41 TCGA-EB-A430-01 19 51986578 51986578 C T CEACAM18 Silent p.C388C 0.43 TCGA-EB-A430-01 19 54503006 54503006 C T CACNG6 Silent p.A175A 0.40 TCGA-EB-A430-01 19 55106763 55106763 C T LILRA1 Missense_Mutation p.P186L 0.41 deleterious(0.04) probably_damaging(0.954) TCGA-EB-A430-01 19 55450870 55450870 C T NLRP7 Silent p.G439G 0.33 TCGA-EB-A430-01 19 55508782 55508782 C T NLRP2 Missense_Mutation p.P993S 0.22 tolerated(0.47) benign(0.023) TCGA-EB-A430-01 19 55508783 55508783 C T NLRP2 Missense_Mutation p.P993L 0.22 tolerated(0.37) benign(0.183) TCGA-EB-A430-01 19 55543745 55543745 G A GP6 Silent p.S29S 0.38 TCGA-EB-A430-01 19 55591124 55591124 T C EPS8L1 Silent p.L62L 0.41 TCGA-EB-A430-01 19 55614817 55614817 G A PPP1R12C Silent p.L231L 0.21 TCGA-EB-A430-01 19 55813012 55813013 - A BRSK1 Frame_Shift_Ins p.R273Kfs*70 0.38 TCGA-EB-A430-01 19 56701421 56701421 G A ZSCAN5B Silent p.A421A 0.32 TCGA-EB-A430-01 19 56735006 56735006 C T ZSCAN5A Silent p.R194R 0.30 TCGA-EB-A430-01 19 58213352 58213352 A G ZNF154 Missense_Mutation p.V322A 0.36 deleterious(0.03) probably_damaging(0.932) TCGA-EB-A430-01 19 6432083 6432083 C T SLC25A41 Missense_Mutation p.D114N 0.60 deleterious(0) probably_damaging(0.957) TCGA-EB-A430-01 19 7805410 7805410 A G CD209 3'UTR 0.56 TCGA-EB-A430-01 19 8176611 8176611 T G FBN3 Missense_Mutation p.R1335S 0.21 tolerated(0.06) benign(0.005) TCGA-EB-A430-01 19 886159 886159 A G MED16 Missense_Mutation p.F164L 0.37 deleterious(0.01) benign(0.418) TCGA-EB-A430-01 19 9017514 9017514 C T MUC16 Missense_Mutation p.E12604K 0.68 possibly_damaging(0.582) TCGA-EB-A430-01 19 9048383 9048383 G A MUC16 Missense_Mutation p.S11083L 0.18 benign(0.402) TCGA-EB-A430-01 19 9236773 9236773 A C OR7G3 Missense_Mutation p.L285R 0.38 deleterious(0) benign(0.157) TCGA-EB-A430-01 19 9237504 9237504 C T OR7G3 Silent p.G41G 0.58 TCGA-EB-A430-01 1 103496791 103496791 G A COL11A1 Nonsense_Mutation p.Q221* 0.26 TCGA-EB-A430-01 1 107950319 107950319 C T NTNG1 Missense_Mutation p.S359F 0.22 deleterious(0.05) benign(0.035) TCGA-EB-A430-01 1 110022185 110022185 G A SYPL2 3'UTR 0.35 TCGA-EB-A430-01 1 110030288 110030288 C T ATXN7L2 Missense_Mutation p.P188S 0.33 tolerated(0.48) benign(0.008) TCGA-EB-A430-01 1 12836184 12836184 C T PRAMEF12 Silent p.F262F 0.23 TCGA-EB-A430-01 1 12856119 12856119 G A PRAMEF1 Missense_Mutation p.E467K 0.10 tolerated(0.38) possibly_damaging(0.54) TCGA-EB-A430-01 1 12919887 12919887 G T PRAMEF2 Missense_Mutation p.E209D 0.32 tolerated(0.31) benign(0.177) TCGA-EB-A430-01 1 12979762 12979762 C T PRAMEF7 Silent p.I318I 0.26 TCGA-EB-A430-01 1 147381031 147381031 C T GJA8 Nonsense_Mutation p.Q317* 0.24 TCGA-EB-A430-01 1 150445417 150445417 C T RPRD2 Silent p.L1331L 0.21 TCGA-EB-A430-01 1 150789286 150789286 G A ARNT Missense_Mutation p.P594S 0.19 tolerated_low_confidence(0.56) benign(0.16) TCGA-EB-A430-01 1 151512809 151512809 A T TUFT1 5'UTR 0.14 TCGA-EB-A430-01 1 151773552 151773552 G A LINGO4 Silent p.F543F 0.11 TCGA-EB-A430-01 1 152128659 152128659 G A RPTN Missense_Mutation p.H306Y 0.20 tolerated(0.09) benign(0.033) TCGA-EB-A430-01 1 154744645 154744645 G A KCNN3 Silent p.I418I 0.18 TCGA-EB-A430-01 1 155264286 155264286 C T PKLR Missense_Mutation p.E318K 0.66 deleterious(0) possibly_damaging(0.86) TCGA-EB-A430-01 1 1562489 1562489 C G MIB2 Missense_Mutation p.Q541E 0.19 tolerated(0.32) probably_damaging(0.995) TCGA-EB-A430-01 1 158300698 158300698 A G CD1B Silent p.S72S 0.15 TCGA-EB-A430-01 1 158326582 158326582 C T CD1E Nonsense_Mutation p.Q355* 0.32 TCGA-EB-A430-01 1 158654955 158654955 G A SPTA1 Silent p.I69I 0.32 TCGA-EB-A430-01 1 15894599 15894599 C T DNAJC16 Missense_Mutation p.S759F 0.36 deleterious(0.04) probably_damaging(0.929) TCGA-EB-A430-01 1 159175395 159175395 C T DARC Silent p.L58L 0.43 TCGA-EB-A430-01 1 161130935 161130935 C T USP21 Silent p.L169L 0.38 TCGA-EB-A430-01 1 165173242 165173242 C T LMX1A Missense_Mutation p.D342N 0.28 tolerated(0.06) probably_damaging(0.941) TCGA-EB-A430-01 1 16560109 16560109 G A RSG1 Missense_Mutation p.T88I 0.37 tolerated(0.27) benign(0.018) TCGA-EB-A430-01 1 1686902 1686902 G A NADK Missense_Mutation p.P345L 0.34 deleterious(0) probably_damaging(0.982) TCGA-EB-A430-01 1 1686903 1686903 G A NADK Missense_Mutation p.P345S 0.34 deleterious(0) probably_damaging(0.998) TCGA-EB-A430-01 1 169510307 169510307 G A F5 Missense_Mutation p.P1341S 0.30 tolerated_low_confidence(0.14) probably_damaging(0.998) TCGA-EB-A430-01 1 178482356 178482356 A T TEX35 Silent p.T11T 0.32 TCGA-EB-A430-01 1 179380393 179380393 G A AXDND1 Missense_Mutation p.A408T 0.38 deleterious(0) possibly_damaging(0.811) TCGA-EB-A430-01 1 179816679 179816679 A C TOR1AIP2 Missense_Mutation p.W216G 0.31 deleterious(0.01) possibly_damaging(0.674) TCGA-EB-A430-01 1 183221625 183221625 G A NMNAT2 3'UTR 0.50 TCGA-EB-A430-01 1 196928040 196928040 G A CFHR2 Missense_Mutation p.E215K 0.11 tolerated(0.36) benign(0.011) TCGA-EB-A430-01 1 198704380 198704380 A G PTPRC Missense_Mutation p.N801S 0.24 deleterious(0) probably_damaging(0.986) TCGA-EB-A430-01 1 207086375 207086375 G A FAIM3 Missense_Mutation p.S129L 0.33 tolerated(0.16) benign(0.001) TCGA-EB-A430-01 1 214209143 214209143 C T PROX1 Missense_Mutation p.S727F 0.64 deleterious(0) probably_damaging(0.997) TCGA-EB-A430-01 1 22974015 22974015 C T C1QC Silent p.T159T 0.18 TCGA-EB-A430-01 1 230372422 230372422 C T GALNT2 Silent p.L186L 0.34 TCGA-EB-A430-01 1 24421410 24421410 G A MYOM3 Silent p.P287P 0.35 TCGA-EB-A430-01 1 248367283 248367283 T C OR2M3 Missense_Mutation p.L305S 0.32 deleterious(0) benign(0.128) TCGA-EB-A430-01 1 26506822 26506822 C T CNKSR1 Intron 0.36 TCGA-EB-A430-01 1 3328320 3328320 C T PRDM16 Missense_Mutation p.P520L 0.31 deleterious(0) probably_damaging(0.98) TCGA-EB-A430-01 1 34164422 34164422 C T CSMD2 Missense_Mutation p.G1246S 0.22 deleterious(0) probably_damaging(0.991) TCGA-EB-A430-01 1 34276406 34276406 G A CSMD2 Missense_Mutation p.P422S 0.25 deleterious(0.03) probably_damaging(1) TCGA-EB-A430-01 1 35485075 35485075 G A ZMYM6 Nonsense_Mutation p.Q103* 0.25 TCGA-EB-A430-01 1 38079395 38079395 C T RSPO1 Silent p.R202R 0.23 TCGA-EB-A430-01 1 39781267 39781267 C T MACF1 Missense_Mutation p.P1123L 0.36 possibly_damaging(0.893) TCGA-EB-A430-01 1 40705264 40705264 T G RLF Silent p.G1630G 0.29 TCGA-EB-A430-01 1 43913845 43913845 C T SZT2 Missense_Mutation p.P3163L 0.33 tolerated(0.46) benign(0.002) TCGA-EB-A430-01 1 47399664 47399664 C T CYP4A11 Silent p.E392E 0.27 TCGA-EB-A430-01 1 47505115 47505115 C T CYP4X1 Silent p.I328I 0.29 TCGA-EB-A430-01 1 57489238 57489238 A T DAB1 Missense_Mutation p.S287R 0.33 tolerated(0.33) benign(0.206) TCGA-EB-A430-01 1 6257784 6257785 - T RPL22 Frame_Shift_Ins p.K16Efs*9 0.30 TCGA-EB-A430-01 1 75172072 75172072 C T CRYZ Missense_Mutation p.G300S 0.32 tolerated(0.07) benign(0.118) TCGA-EB-A430-01 1 75684339 75684339 G A SLC44A5 Silent p.T455T 0.44 TCGA-EB-A430-01 1 85331371 85331371 C T LPAR3 Missense_Mutation p.V145M 0.32 tolerated(0.12) probably_damaging(1) TCGA-EB-A430-01 1 89579900 89579900 G A GBP2 Silent p.A316A 0.42 TCGA-EB-A430-01 1 9791880 9791880 C T CLSTN1 Silent p.P834P 0.27 TCGA-EB-A430-01 20 21378002 21378002 G A NKX2-4 Silent p.S12S 0.33 TCGA-EB-A430-01 20 21687310 21687310 C T PAX1 Missense_Mutation p.T174I 0.52 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 20 24959419 24959419 G A APMAP Silent p.S104S 0.56 TCGA-EB-A430-01 20 30458380 30458380 C T DUSP15 5'UTR 0.70 TCGA-EB-A430-01 20 39316997 39316997 T C MAFB Missense_Mutation p.H165R 0.67 tolerated(0.4) benign(0.026) TCGA-EB-A430-01 20 39317166 39317166 C T MAFB Missense_Mutation p.E109K 0.22 deleterious(0) probably_damaging(0.973) TCGA-EB-A430-01 20 4168139 4168139 C T SMOX 3'UTR 0.58 TCGA-EB-A430-01 20 44676716 44676716 G A SLC12A5 Silent p.K691K 0.29 TCGA-EB-A430-01 20 45353965 45353965 C T SLC2A10 Missense_Mutation p.S97F 0.22 deleterious(0) probably_damaging(0.998) TCGA-EB-A430-01 20 470430 470430 A C CSNK2A1 Nonsense_Mutation p.Y239* 0.14 TCGA-EB-A430-01 20 57769414 57769414 C T ZNF831 Missense_Mutation p.P1114S 0.63 tolerated(0.13) possibly_damaging(0.561) TCGA-EB-A430-01 21 30378954 30378954 C T RWDD2B Nonsense_Mutation p.W248* 0.35 TCGA-EB-A430-01 21 33368105 33368105 A T HUNK Nonsense_Mutation p.K444* 0.22 TCGA-EB-A430-01 21 35258649 35258649 G A ITSN1 Silent p.T1634T 0.45 TCGA-EB-A430-01 21 36259466 36259466 G A RUNX1 Intron 0.11 TCGA-EB-A430-01 21 37833237 37833237 C T CLDN14 3'UTR 0.50 TCGA-EB-A430-01 21 39087124 39087124 C T KCNJ6 Nonsense_Mutation p.W112* 0.27 TCGA-EB-A430-01 21 39672255 39672255 G A KCNJ15 Missense_Mutation p.E358K 0.24 tolerated(0.3) unknown(0) TCGA-EB-A430-01 21 43161481 43161481 G A RIPK4 Silent p.I624I 0.33 TCGA-EB-A430-01 21 46012195 46012195 G T KRTAP10-6 Nonsense_Mutation p.C57* 0.17 TCGA-EB-A430-01 22 19130241 19130241 G A DGCR14 Missense_Mutation p.P101L 0.30 tolerated(0.09) probably_damaging(1) TCGA-EB-A430-01 22 26689100 26689100 G A SEZ6L Missense_Mutation p.E275K 0.43 tolerated(0.41) possibly_damaging(0.747) TCGA-EB-A430-01 22 30127441 30127441 G A CABP7 3'UTR 0.54 TCGA-EB-A430-01 22 30860859 30860859 G A SEC14L3 Silent p.L204L 0.42 TCGA-EB-A430-01 22 31529903 31529903 C T INPP5J Missense_Mutation p.S472L 0.21 tolerated(0.06) benign(0.129) TCGA-EB-A430-01 22 37770734 37770734 G A ELFN2 Missense_Mutation p.L281F 0.43 tolerated(0.59) benign(0.223) TCGA-EB-A430-01 22 38373873 38373873 C T SOX10 Splice_Site p.X233_splice 0.26 TCGA-EB-A430-01 22 38373874 38373874 C T SOX10 Missense_Mutation p.G233S 0.27 tolerated(0.05) probably_damaging(0.941) TCGA-EB-A430-01 22 39884910 39884910 G A MGAT3 Missense_Mutation p.G520R 0.55 deleterious_low_confidence(0.01) benign(0.051) TCGA-EB-A430-01 22 41556696 41556696 C T EP300 Missense_Mutation p.S1214F 0.35 possibly_damaging(0.885) TCGA-EB-A430-01 22 43088926 43088926 C T A4GALT Silent p.T344T 0.44 TCGA-EB-A430-01 22 50893056 50893056 G A SBF1 Missense_Mutation p.P1643L 0.32 tolerated(0.35) benign(0.027) TCGA-EB-A430-01 2 10269209 10269209 G A RRM2 Missense_Mutation p.M375I 0.55 deleterious_low_confidence(0.03) benign(0.043) TCGA-EB-A430-01 2 103136376 103136376 G A SLC9A4 Missense_Mutation p.D594N 0.31 tolerated(0.14) benign(0.013) TCGA-EB-A430-01 2 113670641 113670641 G A IL37 Missense_Mutation p.E18K 0.38 deleterious(0.02) probably_damaging(0.941) TCGA-EB-A430-01 2 120388191 120388191 C T PCDP1 Missense_Mutation p.H593Y 0.33 tolerated(0.13) benign(0.06) TCGA-EB-A430-01 2 125671770 125671770 G A CNTNAP5 Missense_Mutation p.E1276K 0.30 tolerated(0.73) probably_damaging(0.997) TCGA-EB-A430-01 2 128346131 128346131 G A MYO7B Splice_Site p.X618_splice 0.34 TCGA-EB-A430-01 2 158962636 158962636 C T UPP2 Missense_Mutation p.P87S 0.35 tolerated(0.05) probably_damaging(0.997) TCGA-EB-A430-01 2 160807914 160807914 G A PLA2R1 Silent p.S1159S 0.21 TCGA-EB-A430-01 2 170127610 170127610 C T LRP2 Silent p.Q708Q 0.42 TCGA-EB-A430-01 2 175311446 175311446 G A GPR155 Nonsense_Mutation p.Q636* 0.23 TCGA-EB-A430-01 2 179440911 179440911 G A TTN Silent p.I23316I 0.31 TCGA-EB-A430-01 2 179467008 179467008 C T TTN Splice_Site p.X18374_splice 0.29 TCGA-EB-A430-01 2 179467009 179467009 C T TTN Missense_Mutation p.E18374K 0.29 TCGA-EB-A430-01 2 179542513 179542513 C T TTN Missense_Mutation p.E11376K 0.37 TCGA-EB-A430-01 2 179641459 179641459 G A TTN Missense_Mutation p.S1711F 0.29 TCGA-EB-A430-01 2 179733897 179733897 C T CCDC141 Missense_Mutation p.D781N 0.45 deleterious(0.05) benign(0.105) TCGA-EB-A430-01 2 185803485 185803485 C T ZNF804A Missense_Mutation p.T1121I 0.36 deleterious(0) probably_damaging(0.981) TCGA-EB-A430-01 2 186672471 186672471 T C FSIP2 Silent p.V6235V 0.51 TCGA-EB-A430-01 2 190922148 190922148 G A MSTN Missense_Mutation p.P322S 0.35 deleterious(0) possibly_damaging(0.632) TCGA-EB-A430-01 2 197183811 197183811 G A HECW2 Silent p.L601L 0.44 TCGA-EB-A430-01 2 197656111 197656111 C T GTF3C3 Missense_Mutation p.R162Q 0.41 deleterious(0) possibly_damaging(0.741) TCGA-EB-A430-01 2 198355012 198355012 A G HSPD1 Missense_Mutation p.V293A 0.26 tolerated(0.21) possibly_damaging(0.559) TCGA-EB-A430-01 2 201533398 201533398 C T AOX1 Missense_Mutation p.P1224S 0.19 deleterious(0.02) possibly_damaging(0.817) TCGA-EB-A430-01 2 203591027 203591027 C T FAM117B Nonsense_Mutation p.R301* 0.20 TCGA-EB-A430-01 2 204045234 204045234 T G NBEAL1 Missense_Mutation p.N2169K 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 2 212488718 212488718 G A ERBB4 Missense_Mutation p.R711C 0.28 deleterious(0.02) probably_damaging(0.976) TCGA-EB-A430-01 2 213921659 213921659 C T IKZF2 Missense_Mutation p.E102K 0.40 tolerated(0.45) possibly_damaging(0.512) TCGA-EB-A430-01 2 217012832 217012832 C T XRCC5 Silent p.P501P 0.18 TCGA-EB-A430-01 2 219602568 219602568 A G TTLL4 Missense_Mutation p.K57E 0.15 tolerated(0.1) benign(0.007) TCGA-EB-A430-01 2 223507637 223507637 G A FARSB Missense_Mutation p.P68S 0.38 deleterious(0.02) possibly_damaging(0.635) TCGA-EB-A430-01 2 226516259 226516259 C T NYAP2 Missense_Mutation p.S647L 0.41 deleterious_low_confidence(0.03) benign(0.295) TCGA-EB-A430-01 2 228155552 228155552 G A COL4A3 Missense_Mutation p.G1054R 0.23 unknown(0) TCGA-EB-A430-01 2 230253102 230253102 G A DNER Silent p.C578C 0.43 TCGA-EB-A430-01 2 234402192 234402192 G A USP40 Silent p.F943F 0.50 TCGA-EB-A430-01 2 234526430 234526430 G A UGT1A8 Missense_Mutation p.G26E 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A430-01 2 238726726 238726726 G A RBM44 Silent p.S389S 0.43 TCGA-EB-A430-01 2 25458594 25458595 - A DNMT3A Frame_Shift_Ins p.W860Lfs*4 0.35 TCGA-EB-A430-01 2 29296428 29296428 C T C2orf71 Missense_Mutation p.G234R 0.22 tolerated(0.09) benign(0.222) TCGA-EB-A430-01 2 29296429 29296429 C A C2orf71 Missense_Mutation p.L233F 0.23 deleterious(0) probably_damaging(0.996) TCGA-EB-A430-01 2 43965500 43965500 T G PLEKHH2 Missense_Mutation p.N988K 0.29 deleterious(0) possibly_damaging(0.703) TCGA-EB-A430-01 2 62450370 62450370 T G B3GNT2 Missense_Mutation p.C339G 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 2 74475553 74475553 C T SLC4A5 Missense_Mutation p.G572R 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A430-01 2 74747158 74747158 G A DQX1 Missense_Mutation p.A500V 0.17 deleterious(0.03) benign(0.01) TCGA-EB-A430-01 2 87016468 87016468 A C CD8A Silent p.V201V 0.30 TCGA-EB-A430-01 2 95481750 95481750 C T ANKRD20A8P Intron 0.23 TCGA-EB-A430-01 2 96799182 96799182 G A ASTL Missense_Mutation p.S146F 0.38 deleterious(0) possibly_damaging(0.874) TCGA-EB-A430-01 3 108072555 108072555 G A HHLA2 Missense_Mutation p.E116K 0.27 deleterious(0.03) benign(0.227) TCGA-EB-A430-01 3 108363309 108363309 C T DZIP3 Silent p.F480F 0.32 TCGA-EB-A430-01 3 109031524 109031524 C T DPPA2 Missense_Mutation p.E17K 0.40 deleterious(0.04) benign(0.143) TCGA-EB-A430-01 3 111658403 111658403 G A PHLDB2 Missense_Mutation p.E738K 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A430-01 3 113302262 113302262 G A SIDT1 Missense_Mutation p.D252N 0.23 deleterious(0.02) possibly_damaging(0.809) TCGA-EB-A430-01 3 119545525 119545525 G A GSK3B 3'Flank 0.56 TCGA-EB-A430-01 3 130992377 130992377 C T NEK11 Silent p.F559F 0.29 TCGA-EB-A430-01 3 141328324 141328324 C T RASA2 Missense_Mutation p.S763F 0.30 deleterious(0) possibly_damaging(0.832) TCGA-EB-A430-01 3 150460058 150460058 G A SIAH2 Missense_Mutation p.S282L 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 3 164908219 164908219 C T SLITRK3 Missense_Mutation p.E134K 0.32 deleterious(0.03) probably_damaging(0.993) TCGA-EB-A430-01 3 168849246 168849246 G A MECOM Missense_Mutation p.P71L 0.34 tolerated(0.11) benign(0.005) TCGA-EB-A430-01 3 182871567 182871567 G A LAMP3 Missense_Mutation p.S221L 0.34 tolerated(0.07) benign(0.179) TCGA-EB-A430-01 3 184009960 184009960 C T ECE2 Silent p.F862F 0.30 TCGA-EB-A430-01 3 185184743 185184743 G A MAP3K13 Silent p.Q545Q 0.30 TCGA-EB-A430-01 3 185237043 185237043 G A LIPH Missense_Mutation p.S258F 0.12 deleterious(0) probably_damaging(0.995) TCGA-EB-A430-01 3 193016960 193016960 G A ATP13A5 Silent p.L936L 0.38 TCGA-EB-A430-01 3 193049065 193049065 G A ATP13A5 Silent p.I436I 0.38 TCGA-EB-A430-01 3 195594947 195594947 G A TNK2 Missense_Mutation p.A804V 0.47 tolerated_low_confidence(0.24) benign(0.005) TCGA-EB-A430-01 3 197508692 197508692 C T FYTTD1 Missense_Mutation p.T290M 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 3 38163216 38163216 G A DLEC1 Missense_Mutation p.R1655Q 0.27 tolerated(0.17) benign(0.036) TCGA-EB-A430-01 3 38888526 38888526 G A SCN11A Missense_Mutation p.R1679C 0.36 deleterious(0) probably_damaging(0.923) TCGA-EB-A430-01 3 42956252 42956252 C T ZNF662 Silent p.F255F 0.16 TCGA-EB-A430-01 3 45800590 45800590 G A SLC6A20 Silent p.A553A 0.32 TCGA-EB-A430-01 3 46937273 46937273 G A PTH1R Missense_Mutation p.G76E 0.26 tolerated(0.07) benign(0.004) TCGA-EB-A430-01 3 49212334 49212334 G A KLHDC8B Missense_Mutation p.G234E 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 3 49898218 49898218 G A CAMKV Missense_Mutation p.L236F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 3 52257747 52257747 G A TLR9 Silent p.L349L 0.37 TCGA-EB-A430-01 3 52549028 52549028 G A STAB1 Silent p.R1277R 0.36 TCGA-EB-A430-01 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.29 TCGA-EB-A430-01 3 61989096 61989096 G A PTPRG Silent p.V148V 0.33 TCGA-EB-A430-01 3 73111848 73111848 C T EBLN2 Missense_Mutation p.L206F 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-EB-A430-01 3 8787320 8787320 C A CAV3 Missense_Mutation p.L75M 0.31 deleterious(0.01) possibly_damaging(0.837) TCGA-EB-A430-01 3 88039902 88039902 G A HTR1F Translation_Start_Site p.M1? 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A430-01 3 97851618 97851618 C T OR5H1 Missense_Mutation p.P26L 0.32 tolerated(0.81) benign(0.013) TCGA-EB-A430-01 4 108870613 108870613 C T CYP2U1 Nonsense_Mutation p.R466* 0.29 TCGA-EB-A430-01 4 146086315 146086315 G A OTUD4 Missense_Mutation p.S45F 0.38 deleterious(0) probably_damaging(0.947) TCGA-EB-A430-01 4 158256885 158256885 G A GRIA2 Silent p.E443E 0.45 TCGA-EB-A430-01 4 1746454 1746454 C T TACC3 Silent p.I782I 0.56 TCGA-EB-A430-01 4 183522201 183522201 G A TENM3 Silent p.R212R 0.49 TCGA-EB-A430-01 4 188924640 188924640 G A ZFP42 Missense_Mutation p.V227I 0.45 tolerated(0.24) benign(0) TCGA-EB-A430-01 4 266289 266289 C T ZNF732 Silent p.R119R 0.31 TCGA-EB-A430-01 4 69692192 69692192 G A UGT2B10 Nonsense_Mutation p.W355* 0.53 TCGA-EB-A430-01 4 74453587 74453587 G A RASSF6 Missense_Mutation p.P150S 0.49 tolerated(0.35) benign(0.036) TCGA-EB-A430-01 4 74863796 74863796 C T CXCL5 Missense_Mutation p.G87R 0.53 deleterious(0.02) benign(0.175) TCGA-EB-A430-01 4 94159577 94159577 C T GRID2 Missense_Mutation p.P394L 0.53 deleterious(0) probably_damaging(0.911) TCGA-EB-A430-01 5 11364989 11364989 G A CTNND2 Silent p.A397A 0.26 TCGA-EB-A430-01 5 114462380 114462380 G A TRIM36 Silent p.F669F 0.29 TCGA-EB-A430-01 5 129520822 129520822 T C CHSY3 Missense_Mutation p.S663P 0.36 tolerated(0.15) benign(0.008) TCGA-EB-A430-01 5 137289908 137289908 G A FAM13B Silent p.F533F 0.28 TCGA-EB-A430-01 5 138661967 138661967 A T MATR3 Missense_Mutation p.K829N 0.35 deleterious(0) possibly_damaging(0.541) TCGA-EB-A430-01 5 140220944 140220944 G A PCDHA8 Missense_Mutation p.R13Q 0.36 tolerated_low_confidence(0.58) benign(0.004) TCGA-EB-A430-01 5 140502223 140502223 G A PCDHB4 Missense_Mutation p.D215N 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A430-01 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.38 deleterious(0.04) benign(0.008) TCGA-EB-A430-01 5 141511443 141511443 T A NDFIP1 Missense_Mutation p.I45N 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-EB-A430-01 5 149374406 149374406 C T TIGD6 Missense_Mutation p.M502I 0.49 tolerated(0.34) benign(0.002) TCGA-EB-A430-01 5 156766193 156766193 C T CYFIP2 Silent p.I812I 0.29 TCGA-EB-A430-01 5 167379611 167379611 G A TENM2 Missense_Mutation p.S244N 0.22 tolerated_low_confidence(0.37) benign(0.016) TCGA-EB-A430-01 5 178634626 178634626 T C ADAMTS2 Missense_Mutation p.H260R 0.37 tolerated(0.06) benign(0.231) TCGA-EB-A430-01 5 31305313 31305313 C T CDH6 Silent p.T344T 0.29 TCGA-EB-A430-01 5 31305314 31305314 C T CDH6 Missense_Mutation p.L345F 0.27 tolerated(0.31) benign(0.062) TCGA-EB-A430-01 5 35700639 35700639 C T SPEF2 Missense_Mutation p.P728L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.38 deleterious(0.01) probably_damaging(0.912) TCGA-EB-A430-01 5 45461956 45461956 C T HCN1 Missense_Mutation p.E335K 0.28 tolerated(1) benign(0.001) TCGA-EB-A430-01 5 462402 462402 G A EXOC3 Missense_Mutation p.E545K 0.30 deleterious(0.04) probably_damaging(0.973) TCGA-EB-A430-01 5 73205313 73205313 G A ARHGEF28 Missense_Mutation p.G1413D 0.45 deleterious(0.03) possibly_damaging(0.461) TCGA-EB-A430-01 5 76722396 76722396 G A PDE8B 3'UTR 0.47 TCGA-EB-A430-01 5 78587109 78587109 C T JMY Missense_Mutation p.A505V 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A430-01 5 79361262 79361262 G A THBS4 Missense_Mutation p.G386R 0.27 deleterious(0.02) probably_damaging(1) TCGA-EB-A430-01 5 95018646 95018646 G C SPATA9 5'UTR 0.15 TCGA-EB-A430-01 5 95765009 95765009 C T PCSK1 Missense_Mutation p.E65K 0.43 tolerated(0.7) benign(0.004) TCGA-EB-A430-01 5 9629202 9629202 A C TAS2R1 3'UTR 0.45 TCGA-EB-A430-01 6 10874853 10874853 G A GCM2 Missense_Mutation p.P299L 0.37 tolerated(0.21) benign(0.01) TCGA-EB-A430-01 6 10990062 10990062 G A ELOVL2 Silent p.F213F 0.27 TCGA-EB-A430-01 6 117708985 117708985 C T ROS1 Missense_Mutation p.G658S 0.49 tolerated(0.13) probably_damaging(0.938) TCGA-EB-A430-01 6 130761907 130761907 C T TMEM200A Missense_Mutation p.R114C 0.50 deleterious(0.01) benign(0.373) TCGA-EB-A430-01 6 132910399 132910399 G A TAAR5 Missense_Mutation p.P143S 0.42 deleterious(0.05) probably_damaging(0.94) TCGA-EB-A430-01 6 136599728 136599728 C T BCLAF1 Nonsense_Mutation p.W97* 0.24 TCGA-EB-A430-01 6 151939319 151939319 G A CCDC170 3'UTR 0.55 TCGA-EB-A430-01 6 26502153 26502153 C T BTN1A1 Silent p.L139L 0.21 TCGA-EB-A430-01 6 28872089 28872089 G A TRIM27 Nonsense_Mutation p.Q434* 0.30 TCGA-EB-A430-01 6 29323035 29323035 G A OR5V1 Missense_Mutation p.S313F 0.28 tolerated_low_confidence(0.14) benign(0.001) TCGA-EB-A430-01 6 34101012 34101012 G A GRM4 Missense_Mutation p.R88C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 6 35705811 35705811 A G ARMC12 Silent p.A84A 0.35 TCGA-EB-A430-01 6 41712480 41712480 G A PGC Silent p.F42F 0.30 TCGA-EB-A430-01 6 52141932 52141932 G A MCM3 Silent p.I411I 0.37 TCGA-EB-A430-01 6 53986346 53986346 C T MLIP Silent p.F55F 0.30 TCGA-EB-A430-01 6 70926736 70926736 C T COL9A1 Missense_Mutation p.R877Q 0.59 benign(0.121) TCGA-EB-A430-01 6 87725246 87725246 C T HTR1E Missense_Mutation p.A65V 0.57 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 6 90499510 90499510 G A MDN1 Missense_Mutation p.P407S 0.42 possibly_damaging(0.781) TCGA-EB-A430-01 6 99790802 99790803 - A FAXC Frame_Shift_Ins p.Y125Lfs*6 0.24 TCGA-EB-A430-01 7 100189396 100189396 G A FBXO24 Silent p.K181K 0.42 TCGA-EB-A430-01 7 100350642 100350642 C T ZAN Missense_Mutation p.P972S 0.35 unknown(0) TCGA-EB-A430-01 7 100350643 100350643 C T ZAN Missense_Mutation p.P972L 0.35 unknown(0) TCGA-EB-A430-01 7 111846750 111846750 C T ZNF277 5'UTR 0.50 TCGA-EB-A430-01 7 116960716 116960716 C T WNT2 Nonsense_Mutation p.W72* 0.37 TCGA-EB-A430-01 7 127669886 127669886 C T LRRC4 Missense_Mutation p.E270K 0.44 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A430-01 7 128494698 128494698 G A FLNC Missense_Mutation p.G2320E 0.55 tolerated(0.11) probably_damaging(1) TCGA-EB-A430-01 7 138264082 138264082 C T TRIM24 Missense_Mutation p.S797F 0.31 tolerated(0.15) benign(0.06) TCGA-EB-A430-01 7 138732434 138732434 G A ZC3HAV1 Missense_Mutation p.S872L 0.49 tolerated(1) benign(0) TCGA-EB-A430-01 7 139416379 139416379 G A HIPK2 Missense_Mutation p.P152L 0.26 deleterious(0.02) benign(0.004) TCGA-EB-A430-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.54 deleterious(0) probably_damaging(0.967) TCGA-EB-A430-01 7 141672737 141672737 G A TAS2R38 Silent p.S251S 0.31 TCGA-EB-A430-01 7 141708471 141708471 G A MGAM Missense_Mutation p.R98Q 0.31 deleterious(0.01) probably_damaging(0.919) TCGA-EB-A430-01 7 142013383 142013383 C T TRBV4-1 Nonsense_Mutation p.R80* 0.42 TCGA-EB-A430-01 7 142510476 142510476 C T TRBV30 Missense_Mutation p.G44R 0.43 deleterious(0) probably_damaging(0.99) TCGA-EB-A430-01 7 142654986 142654986 C A KEL Missense_Mutation p.Q200H 0.45 deleterious(0.02) probably_damaging(0.93) TCGA-EB-A430-01 7 150164341 150164341 C T GIMAP8 Silent p.L185L 0.27 TCGA-EB-A430-01 7 150498808 150498808 C T TMEM176A Missense_Mutation p.S57L 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 7 151845985 151845985 C - KMT2C Frame_Shift_Del p.E4343Kfs*13 0.28 TCGA-EB-A430-01 7 31123775 31123775 G A ADCYAP1R1 Silent p.R116R 0.39 TCGA-EB-A430-01 7 39247098 39247098 G A POU6F2 Silent p.Q130Q 0.25 TCGA-EB-A430-01 7 42012084 42012084 G A GLI3 Missense_Mutation p.P652L 0.43 tolerated(0.33) possibly_damaging(0.611) TCGA-EB-A430-01 7 43360327 43360327 C T HECW1 Missense_Mutation p.S149L 0.29 tolerated(0.25) probably_damaging(0.998) TCGA-EB-A430-01 7 43508618 43508618 G A HECW1 Missense_Mutation p.D1005N 0.44 deleterious(0) probably_damaging(0.985) TCGA-EB-A430-01 7 45632499 45632499 G A ADCY1 Missense_Mutation p.E261K 0.32 tolerated(0.11) benign(0.141) TCGA-EB-A430-01 7 48146999 48146999 A G UPP1 Missense_Mutation p.K230E 0.45 tolerated(1) benign(0.001) TCGA-EB-A430-01 7 63538645 63538645 C T ZNF727 Silent p.T406T 0.48 TCGA-EB-A430-01 7 72848928 72848928 G A FZD9 Silent p.E197E 0.57 TCGA-EB-A430-01 7 72849776 72849776 C T FZD9 Missense_Mutation p.A480V 0.35 deleterious(0.03) possibly_damaging(0.843) TCGA-EB-A430-01 7 74211681 74211681 A T GTF2IRD2 Missense_Mutation p.F724I 0.56 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A430-01 7 81714125 81714125 C T CACNA2D1 Silent p.Q206Q 0.43 TCGA-EB-A430-01 7 82764720 82764720 G A PCLO Missense_Mutation p.P716S 0.33 unknown(0) TCGA-EB-A430-01 7 86415686 86415686 C T GRM3 Missense_Mutation p.P193L 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A430-01 7 86415789 86415789 C T GRM3 Silent p.I227I 0.43 TCGA-EB-A430-01 7 92098549 92098549 G A ERVW-1 Nonsense_Mutation p.R383* 0.44 TCGA-EB-A430-01 7 92764958 92764958 C T SAMD9L Silent p.K109K 0.33 TCGA-EB-A430-01 8 105509456 105509456 C T LRP12 Missense_Mutation p.G442S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 8 110416793 110416793 G A PKHD1L1 Missense_Mutation p.E462K 0.37 tolerated(0.09) benign(0.168) TCGA-EB-A430-01 8 116617101 116617101 T G TRPS1 Missense_Mutation p.Q365H 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.898) TCGA-EB-A430-01 8 123964219 123964219 G A ZHX2 Missense_Mutation p.E157K 0.29 deleterious(0.01) benign(0.221) TCGA-EB-A430-01 8 139890185 139890185 C T COL22A1 Missense_Mutation p.D156N 0.38 unknown(0) TCGA-EB-A430-01 8 145947433 145947433 G A ZNF251 Missense_Mutation p.P538S 0.33 tolerated(0.08) possibly_damaging(0.641) TCGA-EB-A430-01 8 27989810 27989810 G A ELP3 Silent p.K265K 0.35 TCGA-EB-A430-01 8 41561563 41561563 C T ANK1 Missense_Mutation p.S797N 0.45 deleterious(0.01) benign(0.052) TCGA-EB-A430-01 8 59851890 59851890 C T TOX Missense_Mutation p.G128R 0.45 deleterious(0) probably_damaging(0.997) TCGA-EB-A430-01 8 6874222 6874222 C T DEFA3 Missense_Mutation p.E51K 0.15 tolerated(0.22) benign(0.003) TCGA-EB-A430-01 8 69002868 69002868 A C PREX2 Missense_Mutation p.N723T 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A430-01 8 69017544 69017544 C T PREX2 Intron 0.24 TCGA-EB-A430-01 8 95404065 95404065 G A RAD54B Silent p.I527I 0.45 TCGA-EB-A430-01 8 9609151 9609151 C T TNKS Silent p.A955A 0.36 TCGA-EB-A430-01 8 99101873 99101873 G A C8orf47 Missense_Mutation p.G210R 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-EB-A430-01 8 99101874 99101874 G A C8orf47 Missense_Mutation p.G210E 0.32 tolerated(0.15) probably_damaging(0.988) TCGA-EB-A430-01 9 104125257 104125257 C T BAAT Missense_Mutation p.G237E 0.35 deleterious(0) probably_damaging(0.997) TCGA-EB-A430-01 9 104190802 104190802 C T ALDOB Missense_Mutation p.D110N 0.38 deleterious(0.01) possibly_damaging(0.482) TCGA-EB-A430-01 9 105767845 105767845 A T CYLC2 Missense_Mutation p.E311V 0.21 deleterious(0) unknown(0) TCGA-EB-A430-01 9 111617672 111617672 G A ACTL7B Missense_Mutation p.S180F 0.16 tolerated(0.06) possibly_damaging(0.857) TCGA-EB-A430-01 9 113170725 113170725 G A SVEP1 Silent p.P2385P 0.31 TCGA-EB-A430-01 9 113233760 113233760 G A SVEP1 Missense_Mutation p.P961L 0.19 probably_damaging(0.988) TCGA-EB-A430-01 9 116037987 116037987 C T PRPF4 5'UTR 0.22 TCGA-EB-A430-01 9 125330300 125330300 G A OR1L8 Missense_Mutation p.P153S 0.34 tolerated(1) benign(0.07) TCGA-EB-A430-01 9 125486595 125486595 G A OR1L4 Silent p.G109G 0.45 TCGA-EB-A430-01 9 130677091 130677091 G A ST6GALNAC4 Silent p.S14S 0.38 TCGA-EB-A430-01 9 133760430 133760430 C T ABL1 Missense_Mutation p.P937L 0.26 deleterious_low_confidence(0.03) benign(0.002) TCGA-EB-A430-01 9 139391526 139391526 G A NOTCH1 Missense_Mutation p.P2222L 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A430-01 9 139391527 139391527 G A NOTCH1 Missense_Mutation p.P2222S 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A430-01 9 139399982 139399982 C T NOTCH1 Missense_Mutation p.E1456K 0.57 tolerated(0.52) benign(0.002) TCGA-EB-A430-01 9 139934479 139934479 C T NPDC1 Missense_Mutation p.D277N 0.28 deleterious(0) possibly_damaging(0.89) TCGA-EB-A430-01 9 19093291 19093291 C A HAUS6 Missense_Mutation p.G105V 0.46 deleterious(0) probably_damaging(0.984) TCGA-EB-A430-01 9 32784796 32784796 C T TMEM215 Silent p.I205I 0.45 TCGA-EB-A430-01 9 441409 441409 G A DOCK8 Missense_Mutation p.V1783I 0.29 tolerated(0.66) benign(0.001) TCGA-EB-A430-01 9 78547326 78547326 A C PCSK5 Missense_Mutation p.Y75S 0.20 tolerated(0.06) possibly_damaging(0.632) TCGA-EB-A430-01 9 78923611 78923611 G A PCSK5 Missense_Mutation p.G1192R 0.22 deleterious(0.04) benign(0.01) TCGA-EB-A430-01 9 90500129 90500129 C T SPATA31E1 Missense_Mutation p.P243S 0.44 tolerated(0.38) benign(0.391) TCGA-EB-A430-01 9 91628400 91628400 C T SHC3 Missense_Mutation p.E583K 0.47 deleterious(0.01) benign(0.037) TCGA-EB-A430-01 X 101092788 101092788 C T NXF5 Silent p.K295K 0.64 TCGA-EB-A430-01 X 106184680 106184680 A T MORC4 3'UTR 0.71 TCGA-EB-A430-01 X 107431189 107431189 G A COL4A6 Silent p.I553I 0.69 TCGA-EB-A430-01 X 138672022 138672022 C T MCF2 Missense_Mutation p.G857D 0.71 deleterious(0.04) possibly_damaging(0.493) TCGA-EB-A430-01 X 153073876 153073876 C T PDZD4 Missense_Mutation p.E79K 0.69 deleterious(0.02) benign(0.337) TCGA-EB-A430-01 X 154157566 154157566 G T F8 Missense_Mutation p.P1500Q 0.80 deleterious(0.02) benign(0.001) TCGA-EB-A430-01 X 16170454 16170454 C T GRPR Missense_Mutation p.H281Y 0.70 deleterious(0) probably_damaging(0.999) TCGA-EB-A430-01 X 19380941 19380941 C T MAP3K15 Silent p.E1198E 0.72 TCGA-EB-A430-01 X 26213259 26213259 G T MAGEB6 3'UTR 0.77 TCGA-EB-A430-01 X 3028268 3028268 C T ARSF Silent p.A455A 0.55 TCGA-EB-A430-01 X 3240267 3240267 C T MXRA5 Silent p.G1153G 0.68 TCGA-EB-A430-01 X 62885866 62885866 A C ARHGEF9 Missense_Mutation p.L319R 0.60 deleterious(0) probably_damaging(0.998) TCGA-EB-A430-01 X 73960983 73960983 G A KIAA2022 Nonsense_Mutation p.Q1137* 0.74 TCGA-EB-A430-01 X 73961235 73961235 G A KIAA2022 Silent p.L1053L 0.63 TCGA-EB-A430-01 X 89177323 89177323 A C TGIF2LX Missense_Mutation p.E80A 0.70 tolerated(0.06) probably_damaging(0.989) TCGA-EB-A431-01 10 100011405 100011405 C T LOXL4 Missense_Mutation p.G669D 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 10 100011406 100011406 C T LOXL4 Missense_Mutation p.G669S 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A431-01 10 102250018 102250018 G A SEC31B Silent p.F904F 0.24 TCGA-EB-A431-01 10 103827386 103827386 C T HPS6 Missense_Mutation p.P719S 0.39 tolerated(0.16) benign(0.006) TCGA-EB-A431-01 10 104264044 104264044 C T SUFU Silent p.Y45Y 0.19 TCGA-EB-A431-01 10 104497550 104497550 C T SFXN2 3'UTR 0.27 TCGA-EB-A431-01 10 104596821 104596821 C T CYP17A1 Splice_Site p.X99_splice 0.31 TCGA-EB-A431-01 10 105184791 105184791 C T PDCD11 Silent p.S938S 0.24 TCGA-EB-A431-01 10 105330765 105330765 C T NEURL1 Silent p.I74I 0.24 TCGA-EB-A431-01 10 11299807 11299807 C T CELF2 Silent p.I170I 0.30 TCGA-EB-A431-01 10 115973216 115973216 C T TDRD1 Missense_Mutation p.S648F 0.46 tolerated(0.13) benign(0.311) TCGA-EB-A431-01 10 116606080 116606080 C T FAM160B1 Missense_Mutation p.P451L 0.42 tolerated(0.44) benign(0.055) TCGA-EB-A431-01 10 117024753 117024753 G A ATRNL1 Missense_Mutation p.G591R 0.19 tolerated(0.11) probably_damaging(1) TCGA-EB-A431-01 10 120967393 120967393 C T GRK5 5'UTR 0.50 TCGA-EB-A431-01 10 1230938 1230938 G A ADARB2 Missense_Mutation p.P636S 0.19 tolerated(0.19) benign(0.014) TCGA-EB-A431-01 10 123846930 123846930 G A TACC2 Missense_Mutation p.E1639K 0.14 benign(0.07) TCGA-EB-A431-01 10 123985898 123985898 G A TACC2 Silent p.P2542P 0.22 TCGA-EB-A431-01 10 124183730 124183730 C T PLEKHA1 Missense_Mutation p.R233C 0.18 deleterious(0.02) probably_damaging(0.99) TCGA-EB-A431-01 10 124273726 124273726 G A HTRA1 Missense_Mutation p.D432N 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 124358371 124358371 C T DMBT1 Missense_Mutation p.S1013F 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A431-01 10 125521553 125521553 C T CPXM2 Missense_Mutation p.E538K 0.23 tolerated(0.06) benign(0.446) TCGA-EB-A431-01 10 126301941 126301941 G A LHPP 3'UTR 0.34 TCGA-EB-A431-01 10 127737999 127737999 G A ADAM12 Silent p.I583I 0.46 TCGA-EB-A431-01 10 127738224 127738224 G A ADAM12 Missense_Mutation p.P545S 0.43 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 10 128193397 128193397 G A C10orf90 Silent p.P124P 0.19 TCGA-EB-A431-01 10 129691019 129691019 G A CLRN3 Silent p.F10F 0.13 TCGA-EB-A431-01 10 129869120 129869120 T C PTPRE Silent p.L448L 0.10 TCGA-EB-A431-01 10 13214639 13214639 C T MCM10 Missense_Mutation p.R157W 0.28 deleterious(0.02) possibly_damaging(0.586) TCGA-EB-A431-01 10 134628363 134628363 C T TTC40 Silent p.A2391A 0.28 TCGA-EB-A431-01 10 134660720 134660720 C T TTC40 Missense_Mutation p.E2020K 0.42 tolerated(0.41) benign(0.005) TCGA-EB-A431-01 10 134664755 134664755 G A TTC40 Missense_Mutation p.L1877F 0.20 tolerated(0.16) benign(0.016) TCGA-EB-A431-01 10 134942227 134942227 G A GPR123 Missense_Mutation p.G299R 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 135369161 135369161 G A SYCE1 Missense_Mutation p.A257V 0.18 deleterious(0.04) benign(0.019) TCGA-EB-A431-01 10 14882145 14882145 C T HSPA14 Silent p.I70I 0.24 TCGA-EB-A431-01 10 14882146 14882146 C T HSPA14 Silent p.L71L 0.21 TCGA-EB-A431-01 10 15263059 15263059 C T FAM171A1 Missense_Mutation p.G252E 0.22 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 10 15646282 15646282 T G ITGA8 Missense_Mutation p.E681D 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 10 15646283 15646283 T G ITGA8 Missense_Mutation p.E681A 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 18250618 18250618 C T SLC39A12 Missense_Mutation p.H124Y 0.16 deleterious(0) probably_damaging(0.968) TCGA-EB-A431-01 10 21101786 21101786 C T NEBL Silent p.R810R 0.39 TCGA-EB-A431-01 10 21147271 21147271 C T NEBL Silent p.V267V 0.32 TCGA-EB-A431-01 10 24508808 24508808 C T KIAA1217 Silent p.I108I 0.39 TCGA-EB-A431-01 10 24727398 24727398 G A KIAA1217 Missense_Mutation p.G279E 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 24762205 24762205 C T KIAA1217 Missense_Mutation p.R299C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 10 25839938 25839938 C T GPR158 Missense_Mutation p.R480C 0.26 deleterious(0) possibly_damaging(0.881) TCGA-EB-A431-01 10 27537728 27537728 C T RP11-85G18.6 Intron 0.27 TCGA-EB-A431-01 10 27551988 27551988 G A ARMC4P1 RNA 0.42 TCGA-EB-A431-01 10 28149659 28149659 C T ARMC4 Silent p.L972L 0.27 TCGA-EB-A431-01 10 28250509 28250509 C T ARMC4 Silent p.V458V 0.12 TCGA-EB-A431-01 10 29578145 29578145 G A LYZL1 Silent p.R33R 0.43 TCGA-EB-A431-01 10 29773697 29773697 G A SVIL Nonsense_Mutation p.Q1615* 0.41 TCGA-EB-A431-01 10 30318664 30318664 C T KIAA1462 Missense_Mutation p.G138E 0.25 tolerated(0.16) benign(0.397) TCGA-EB-A431-01 10 3150963 3150963 C T PFKP Missense_Mutation p.P314L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 34626240 34626240 G A PARD3 Silent p.F844F 0.12 TCGA-EB-A431-01 10 38343838 38343838 C T ZNF33A Silent p.L262L 0.25 TCGA-EB-A431-01 10 43089078 43089078 G A ZNF33B Silent p.P440P 0.23 TCGA-EB-A431-01 10 49617959 49617959 C T MAPK8 Missense_Mutation p.S97F 0.18 deleterious(0) possibly_damaging(0.646) TCGA-EB-A431-01 10 50315735 50315735 C T VSTM4 Missense_Mutation p.D121N 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 10 5037646 5037646 C T AKR1C2 Silent p.E237E 0.23 TCGA-EB-A431-01 10 50723688 50723688 G A ERCC6-PGBD3 Silent p.F959F 0.21 TCGA-EB-A431-01 10 50873105 50873105 G A CHAT 3'UTR 0.23 TCGA-EB-A431-01 10 52573735 52573735 C T A1CF Missense_Mutation p.G410E 0.27 deleterious(0.05) possibly_damaging(0.844) TCGA-EB-A431-01 10 5415859 5415859 T C UCN3 Missense_Mutation p.F59S 0.30 tolerated(0.14) benign(0) TCGA-EB-A431-01 10 5496380 5496380 C T NET1 Silent p.F307F 0.37 TCGA-EB-A431-01 10 55582010 55582010 G A PCDH15 Missense_Mutation p.P1828S 0.35 tolerated_low_confidence(0.74) unknown(0) TCGA-EB-A431-01 10 60998422 60998423 - T PHYHIPL Frame_Shift_Ins p.Y187Lfs*3 0.20 TCGA-EB-A431-01 10 61005156 61005156 C T PHYHIPL Silent p.T312T 0.45 TCGA-EB-A431-01 10 61844524 61844524 C T ANK3 Missense_Mutation p.E1304K 0.46 probably_damaging(0.93) TCGA-EB-A431-01 10 61926616 61926616 C T ANK3 Silent p.T839T 0.40 TCGA-EB-A431-01 10 62149192 62149192 C T ANK3 Silent p.R35R 0.51 TCGA-EB-A431-01 10 62544606 62544606 C T CDK1 Missense_Mutation p.P61S 0.13 deleterious(0.04) benign(0.31) TCGA-EB-A431-01 10 69934077 69934077 C A MYPN Missense_Mutation p.P743Q 0.26 deleterious(0.01) possibly_damaging(0.838) TCGA-EB-A431-01 10 70520823 70520823 C T CCAR1 Silent p.S660S 0.19 TCGA-EB-A431-01 10 70525792 70525792 C T CCAR1 Silent p.L752L 0.18 TCGA-EB-A431-01 10 70992863 70992863 C T HKDC1 Missense_Mutation p.P157S 0.22 tolerated(0.11) possibly_damaging(0.88) TCGA-EB-A431-01 10 71010396 71010396 G A HKDC1 Missense_Mutation p.M608I 0.20 tolerated(0.17) benign(0.005) TCGA-EB-A431-01 10 72195290 72195290 C T NODAL Missense_Mutation p.E215K 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-EB-A431-01 10 72195291 72195291 C T NODAL Nonsense_Mutation p.W214* 0.26 TCGA-EB-A431-01 10 72509663 72509663 G A ADAMTS14 Silent p.L786L 0.42 TCGA-EB-A431-01 10 73082626 73082626 C T SLC29A3 Missense_Mutation p.P39S 0.24 tolerated_low_confidence(0.17) benign(0.022) TCGA-EB-A431-01 10 73377025 73377025 C T CDH23 Silent p.L337L 0.17 TCGA-EB-A431-01 10 74326545 74326545 G A MICU1 Missense_Mutation p.R3C 0.23 tolerated_low_confidence(0.05) benign(0.017) TCGA-EB-A431-01 10 74806855 74806855 G A P4HA1 Missense_Mutation p.P302L 0.13 deleterious(0.02) benign(0.279) TCGA-EB-A431-01 10 75239181 75239181 C T PPP3CB Silent p.V60V 0.21 TCGA-EB-A431-01 10 75550803 75550803 C T ZSWIM8 Missense_Mutation p.P338S 0.24 deleterious(0) probably_damaging(0.994) TCGA-EB-A431-01 10 78709080 78709080 C T KCNMA1 Silent p.V826V 0.36 TCGA-EB-A431-01 10 79565452 79565452 A G DLG5 Missense_Mutation p.F1712S 0.47 deleterious(0.01) possibly_damaging(0.513) TCGA-EB-A431-01 10 81061902 81061902 C T ZMIZ1 Silent p.S686S 0.17 TCGA-EB-A431-01 10 85965660 85965660 G A CDHR1 Missense_Mutation p.E314K 0.21 deleterious(0) possibly_damaging(0.687) TCGA-EB-A431-01 10 86008671 86008671 C T RGR Missense_Mutation p.S81F 0.26 tolerated(0.1) benign(0.026) TCGA-EB-A431-01 10 88769144 88769144 C T RP11-96C23.10 3'Flank 0.25 TCGA-EB-A431-01 10 90034669 90034669 A T RNLS 3'UTR 0.28 TCGA-EB-A431-01 10 90988067 90988067 G A LIPA Silent p.F106F 0.18 TCGA-EB-A431-01 10 94397260 94397260 C T KIF11 Silent p.N706N 0.33 TCGA-EB-A431-01 10 94397261 94397261 C T KIF11 Silent p.L707L 0.32 TCGA-EB-A431-01 10 94712050 94712050 C T EXOC6 Silent p.F479F 0.11 TCGA-EB-A431-01 10 94712051 94712051 C T EXOC6 Missense_Mutation p.P480S 0.11 deleterious(0) possibly_damaging(0.812) TCGA-EB-A431-01 10 95372905 95372905 G A PDE6C Silent p.G141G 0.25 TCGA-EB-A431-01 10 95394563 95394563 C T PDE6C Silent p.L390L 0.14 TCGA-EB-A431-01 10 95720799 95720799 C T PIPSL RNA 0.20 TCGA-EB-A431-01 10 97452723 97452723 G A TCTN3 Silent p.F151F 0.34 TCGA-EB-A431-01 10 97983714 97983714 G T BLNK Silent p.P131P 0.22 TCGA-EB-A431-01 10 98080535 98080535 G A DNTT Missense_Mutation p.G223D 0.49 tolerated(0.65) benign(0.002) TCGA-EB-A431-01 10 99025671 99025671 C G ARHGAP19 Missense_Mutation p.G90R 0.21 tolerated(0.19) benign(0.336) TCGA-EB-A431-01 11 102239042 102239042 C T BIRC2 Missense_Mutation p.H377Y 0.28 tolerated(0.11) benign(0.021) TCGA-EB-A431-01 11 102649403 102649403 C T MMP10 Missense_Mutation p.G192R 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 11 10327194 10327194 T G ADM 5'UTR 0.47 TCGA-EB-A431-01 11 105795390 105795390 G A GRIA4 Missense_Mutation p.G581E 0.31 tolerated(0.09) benign(0.024) TCGA-EB-A431-01 11 10781728 10781728 C T CTR9 Missense_Mutation p.R201C 0.23 deleterious(0) possibly_damaging(0.895) TCGA-EB-A431-01 11 10785918 10785918 C A CTR9 Missense_Mutation p.P450T 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A431-01 11 10822290 10822290 G A EIF4G2 Silent p.L544L 0.16 TCGA-EB-A431-01 11 1084320 1084320 A T MUC2 Nonsense_Mutation p.K818* 0.17 TCGA-EB-A431-01 11 111753318 111753318 C T C11orf1 Missense_Mutation p.S91F 0.46 deleterious(0.03) probably_damaging(1) TCGA-EB-A431-01 11 111845647 111845647 G A DIXDC1 Missense_Mutation p.R199Q 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 11 113075216 113075216 G A NCAM1 Silent p.V171V 0.41 TCGA-EB-A431-01 11 1157524 1157524 C T MUC5AC Silent p.F235F 0.18 TCGA-EB-A431-01 11 117389425 117389425 C T DSCAML1 Silent p.G482G 0.39 TCGA-EB-A431-01 11 118107914 118107914 G A MPZL3 Missense_Mutation p.S101F 0.46 tolerated(0.05) benign(0.072) TCGA-EB-A431-01 11 119548317 119548317 G A PVRL1 Silent p.I227I 0.32 TCGA-EB-A431-01 11 120980156 120980156 C T TECTA Silent p.F145F 0.47 TCGA-EB-A431-01 11 123601499 123601499 G A ZNF202 Missense_Mutation p.S33F 0.36 tolerated(0.09) probably_damaging(0.935) TCGA-EB-A431-01 11 123753996 123753996 T G TMEM225 Missense_Mutation p.K176T 0.38 tolerated(0.32) benign(0) TCGA-EB-A431-01 11 123847694 123847694 G A OR10S1 Silent p.I235I 0.68 TCGA-EB-A431-01 11 124489801 124489801 C T PANX3 Silent p.L383L 0.31 TCGA-EB-A431-01 11 124793326 124793326 C T HEPACAM Missense_Mutation p.R238K 0.52 deleterious(0.03) benign(0.025) TCGA-EB-A431-01 11 124805848 124805848 G C HEPACAM Missense_Mutation p.P19A 0.48 tolerated(0.64) benign(0.001) TCGA-EB-A431-01 11 1271019 1271019 G A MUC5B Silent p.R4303R 0.30 TCGA-EB-A431-01 11 1629276 1629276 G A KRTAP5-3 Missense_Mutation p.R114C 0.44 deleterious(0.05) unknown(0) TCGA-EB-A431-01 11 1643027 1643027 C T KRTAP5-4 Silent p.G99G 0.10 TCGA-EB-A431-01 11 17496519 17496519 G A ABCC8 Silent p.F68F 0.20 TCGA-EB-A431-01 11 17548858 17548858 C T USH1C Silent p.R136R 0.31 TCGA-EB-A431-01 11 18537661 18537661 G A TSG101 Missense_Mutation p.P60S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 11 18537662 18537662 G A TSG101 Silent p.I59I 0.28 TCGA-EB-A431-01 11 18741636 18741636 C T IGSF22 Missense_Mutation p.D165N 0.19 tolerated(0.07) benign(0.056) TCGA-EB-A431-01 11 20139837 20139837 C T NAV2 3'UTR 0.25 TCGA-EB-A431-01 11 21555950 21555950 A G NELL1 Missense_Mutation p.E559G 0.48 tolerated(0.15) benign(0.013) TCGA-EB-A431-01 11 22707215 22707215 G A GAS2 Silent p.G49G 0.23 TCGA-EB-A431-01 11 2428508 2428508 C T TRPM5 Missense_Mutation p.G987S 0.41 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 11 26587338 26587338 C T MUC15 Missense_Mutation p.G50E 0.18 tolerated_low_confidence(0.41) possibly_damaging(0.479) TCGA-EB-A431-01 11 280862 280862 G A NLRP6 Silent p.K376K 0.17 TCGA-EB-A431-01 11 280863 280863 G A NLRP6 Missense_Mutation p.E377K 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A431-01 11 298634 298634 G A IFITM5 Missense_Mutation p.A89V 0.45 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 11 35456345 35456345 C T PAMR1 Silent p.G464G 0.29 TCGA-EB-A431-01 11 3849110 3849110 G A RHOG Missense_Mutation p.P87S 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 11 396968 396968 C T PKP3 Missense_Mutation p.P156L 0.25 tolerated(0.23) benign(0.013) TCGA-EB-A431-01 11 43421444 43421444 C T TTC17 Silent p.L355L 0.14 TCGA-EB-A431-01 11 43861598 43861598 A G HSD17B12 Missense_Mutation p.K223R 0.36 tolerated(0.21) benign(0.102) TCGA-EB-A431-01 11 44297166 44297166 G A ALX4 Missense_Mutation p.S170F 0.19 deleterious(0) probably_damaging(0.979) TCGA-EB-A431-01 11 44297195 44297195 G A ALX4 Silent p.S160S 0.16 TCGA-EB-A431-01 11 4510542 4510542 C T OR52K1 Silent p.L138L 0.27 TCGA-EB-A431-01 11 45671555 45671555 G A CHST1 Missense_Mutation p.R307W 0.49 deleterious(0) probably_damaging(0.959) TCGA-EB-A431-01 11 4567192 4567192 A C OR52M1 Missense_Mutation p.I258L 0.34 tolerated(0.07) benign(0.158) TCGA-EB-A431-01 11 46398649 46398649 C T DGKZ Silent p.I931I 0.16 TCGA-EB-A431-01 11 46567235 46567235 G A AMBRA1 Missense_Mutation p.A157V 0.21 tolerated_low_confidence(0.7) possibly_damaging(0.763) TCGA-EB-A431-01 11 46765517 46765517 G A CKAP5 3'UTR 0.31 TCGA-EB-A431-01 11 46772952 46772952 G A CKAP5 Missense_Mutation p.P1756S 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 11 47372994 47372994 C T MYBPC3 Missense_Mutation p.E30K 0.57 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EB-A431-01 11 48239225 48239225 G A OR4B1 Silent p.R288R 0.26 TCGA-EB-A431-01 11 4904108 4904108 G A OR51T1 Missense_Mutation p.D354N 0.29 tolerated_low_confidence(0.26) benign(0.004) TCGA-EB-A431-01 11 4929481 4929481 G A OR51A7 Silent p.K294K 0.42 TCGA-EB-A431-01 11 49598271 49598271 C T RP11-707M1.1 RNA 0.25 TCGA-EB-A431-01 11 4967632 4967632 C T OR51A4 Silent p.K233K 0.20 TCGA-EB-A431-01 11 5080082 5080082 G A OR52E2 Missense_Mutation p.S259F 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 11 5173183 5173183 G A OR52A1 Silent p.T139T 0.24 TCGA-EB-A431-01 11 5254170 5254170 G A HBD 3'UTR 0.25 TCGA-EB-A431-01 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.12 deleterious(0.04) probably_damaging(0.987) TCGA-EB-A431-01 11 5364610 5364610 C T OR51B5 Missense_Mutation p.E49K 0.29 tolerated(0.12) benign(0.001) TCGA-EB-A431-01 11 5444164 5444164 C T OR51Q1 Missense_Mutation p.S245F 0.29 deleterious(0) probably_damaging(0.987) TCGA-EB-A431-01 11 5475152 5475152 G A OR51I2 Missense_Mutation p.G145D 0.21 deleterious(0) probably_damaging(0.965) TCGA-EB-A431-01 11 55065549 55065549 G A TRIM51HP RNA 0.50 TCGA-EB-A431-01 11 5510573 5510573 G A OR52D1 Missense_Mutation p.D213N 0.34 deleterious(0.03) probably_damaging(1) TCGA-EB-A431-01 11 55136274 55136274 T A OR4A15 Missense_Mutation p.F305L 0.20 tolerated_low_confidence(0.14) benign(0.007) TCGA-EB-A431-01 11 55594778 55594778 C T OR5L2 Silent p.F28F 0.17 TCGA-EB-A431-01 11 55904960 55904960 G A OR8J3 Missense_Mutation p.P79S 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 11 56057802 56057802 C T OR8H1 Missense_Mutation p.G246E 0.26 deleterious(0) probably_damaging(0.97) TCGA-EB-A431-01 11 56086143 56086143 G A OR8K3 Missense_Mutation p.D121N 0.18 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-EB-A431-01 11 56229998 56229998 C T OR5M9 Missense_Mutation p.D294N 0.40 deleterious(0.02) benign(0.12) TCGA-EB-A431-01 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.14 TCGA-EB-A431-01 11 56949796 56949796 C T LRRC55 Silent p.S143S 0.30 TCGA-EB-A431-01 11 5718514 5718514 G A TRIM22 Missense_Mutation p.E154K 0.25 tolerated(0.39) probably_damaging(0.967) TCGA-EB-A431-01 11 5799487 5799487 G A OR52N5 Silent p.L126L 0.48 TCGA-EB-A431-01 11 5809942 5809942 G A OR52N1 Silent p.T35T 0.22 TCGA-EB-A431-01 11 58190315 58190315 G A OR5B2 Silent p.A140A 0.21 TCGA-EB-A431-01 11 58207002 58207002 G A OR5B12 Missense_Mutation p.S208F 0.43 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-EB-A431-01 11 58379782 58379782 C T ZFP91 Missense_Mutation p.P297S 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A431-01 11 58604556 58604556 T A GLYATL2 Missense_Mutation p.E136D 0.18 tolerated(0.35) benign(0.007) TCGA-EB-A431-01 11 5878443 5878443 G A OR52E8 Missense_Mutation p.P164S 0.22 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 11 59210993 59210993 C T OR5A1 Silent p.L118L 0.24 TCGA-EB-A431-01 11 59271830 59271830 C T OR4D11 Missense_Mutation p.P261L 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 11 5969438 5969438 C T OR56A3 Missense_Mutation p.P288S 0.32 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A431-01 11 59837711 59837711 G A MS4A3 3'UTR 0.22 TCGA-EB-A431-01 11 598398 598398 C T PHRF1 Missense_Mutation p.S307F 0.23 deleterious(0) probably_damaging(0.994) TCGA-EB-A431-01 11 60637129 60637129 C T ZP1 Silent p.S146S 0.24 TCGA-EB-A431-01 11 608545 608545 C T PHRF1 Missense_Mutation p.S1029L 0.19 deleterious(0.01) possibly_damaging(0.776) TCGA-EB-A431-01 11 62300842 62300842 G A AHNAK Silent p.I349I 0.45 TCGA-EB-A431-01 11 6245613 6245613 G A FAM160A2 Missense_Mutation p.S45F 0.21 deleterious(0) probably_damaging(0.914) TCGA-EB-A431-01 11 63177336 63177336 G A SLC22A9 3'UTR 0.15 TCGA-EB-A431-01 11 63883808 63883808 G A FLRT1 Silent p.V23V 0.53 TCGA-EB-A431-01 11 63885270 63885270 G A FLRT1 Missense_Mutation p.E511K 0.23 tolerated(0.15) benign(0.135) TCGA-EB-A431-01 11 64390376 64390376 C T NRXN2 Missense_Mutation p.G1341E 0.23 deleterious(0) probably_damaging(0.98) TCGA-EB-A431-01 11 64416264 64416264 G A NRXN2 Silent p.L1075L 0.26 TCGA-EB-A431-01 11 6461429 6461429 A T HPX Missense_Mutation p.F101Y 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A431-01 11 64677198 64677198 G A ATG2A Missense_Mutation p.P688S 0.18 tolerated(0.11) benign(0.012) TCGA-EB-A431-01 11 64695306 64695306 C T PPP2R5B Silent p.P143P 0.24 TCGA-EB-A431-01 11 64891988 64891988 C T MRPL49 Silent p.G31G 0.36 TCGA-EB-A431-01 11 65046208 65046208 C T POLA2 Missense_Mutation p.P157S 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 11 65272655 65272655 C T MALAT1 RNA 0.23 TCGA-EB-A431-01 11 67402307 67402307 G A TBX10 Silent p.P119P 0.22 TCGA-EB-A431-01 11 674722 674722 G A DEAF1 Silent p.P439P 0.32 TCGA-EB-A431-01 11 674723 674723 G A DEAF1 Missense_Mutation p.P439L 0.32 deleterious(0.03) possibly_damaging(0.776) TCGA-EB-A431-01 11 6789526 6789526 G A OR2AG2 Silent p.V221V 0.32 TCGA-EB-A431-01 11 68475888 68475888 T A MTL5 Missense_Mutation p.K472I 0.30 deleterious(0) possibly_damaging(0.868) TCGA-EB-A431-01 11 72492130 72492130 A C STARD10 Missense_Mutation p.F33V 0.22 deleterious(0) benign(0.229) TCGA-EB-A431-01 11 73620622 73620622 C T PAAF1 Silent p.S237S 0.41 TCGA-EB-A431-01 11 73712523 73712523 G A UCP3 Silent p.F291F 0.30 TCGA-EB-A431-01 11 74873735 74873735 G A SLCO2B1 Missense_Mutation p.E18K 0.37 deleterious(0.04) benign(0.055) TCGA-EB-A431-01 11 7530854 7530854 G A OLFML1 Missense_Mutation p.G215E 0.51 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 11 76814244 76814244 C T OMP Missense_Mutation p.A120V 0.18 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EB-A431-01 11 76893173 76893173 C T MYO7A Silent p.L1027L 0.23 TCGA-EB-A431-01 11 76903282 76903282 G A MYO7A Missense_Mutation p.V1371M 0.30 deleterious(0) possibly_damaging(0.647) TCGA-EB-A431-01 11 8161563 8161563 G A RIC3 Missense_Mutation p.P101L 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 11 828713 828713 G A EFCAB4A Missense_Mutation p.E36K 0.28 deleterious(0) probably_damaging(0.936) TCGA-EB-A431-01 11 8732742 8732742 C T ST5 Missense_Mutation p.E737K 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-EB-A431-01 11 94113357 94113357 C T GPR83 Silent p.K410K 0.37 TCGA-EB-A431-01 11 94113358 94113358 T A GPR83 Missense_Mutation p.K410M 0.35 deleterious(0) possibly_damaging(0.664) TCGA-EB-A431-01 12 100720413 100720413 C T SCYL2 Missense_Mutation p.S508L 0.18 deleterious(0.01) benign(0.15) TCGA-EB-A431-01 12 102045139 102045139 G A MYBPC1 Silent p.E473E 0.21 TCGA-EB-A431-01 12 104056731 104056731 G A STAB2 Silent p.P659P 0.52 TCGA-EB-A431-01 12 105151336 105151336 C T CHST11 Missense_Mutation p.H272Y 0.22 deleterious(0.02) possibly_damaging(0.609) TCGA-EB-A431-01 12 108685499 108685499 C A CMKLR1 3'UTR 0.33 TCGA-EB-A431-01 12 109055900 109055900 G A CORO1C Missense_Mutation p.S118F 0.16 deleterious(0.01) possibly_damaging(0.683) TCGA-EB-A431-01 12 110024576 110024576 C T MVK Missense_Mutation p.H217Y 0.22 tolerated(0.08) benign(0.009) TCGA-EB-A431-01 12 110230202 110230202 G A TRPV4 Silent p.L619L 0.15 TCGA-EB-A431-01 12 110234393 110234393 G A TRPV4 Silent p.S423S 0.27 TCGA-EB-A431-01 12 110240892 110240892 G A TRPV4 Missense_Mutation p.R206C 0.18 deleterious(0) benign(0.005) TCGA-EB-A431-01 12 110240893 110240893 G A TRPV4 Silent p.G205G 0.17 TCGA-EB-A431-01 12 110466277 110466277 C T ANKRD13A Intron 0.11 TCGA-EB-A431-01 12 111319064 111319064 C T CCDC63 Missense_Mutation p.R273C 0.50 deleterious(0) probably_damaging(0.96) TCGA-EB-A431-01 12 111785626 111785626 G A CUX2 Missense_Mutation p.E1320K 0.26 tolerated_low_confidence(0.11) benign(0.005) TCGA-EB-A431-01 12 112585891 112585891 C T TRAFD1 Missense_Mutation p.P314L 0.29 deleterious(0.02) possibly_damaging(0.864) TCGA-EB-A431-01 12 117710272 117710272 G A NOS1 Missense_Mutation p.A586V 0.21 deleterious(0) possibly_damaging(0.857) TCGA-EB-A431-01 12 117768518 117768518 G A NOS1 Silent p.T119T 0.25 TCGA-EB-A431-01 12 119937894 119937894 G A CCDC60 Missense_Mutation p.G190E 0.24 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 12 119937958 119937958 C T CCDC60 Silent p.F211F 0.79 TCGA-EB-A431-01 12 120611912 120611912 G A GCN1L1 Silent p.I385I 0.18 TCGA-EB-A431-01 12 121177255 121177255 C T ACADS 3'UTR 0.36 TCGA-EB-A431-01 12 122413480 122413480 C T WDR66 Silent p.L965L 0.31 TCGA-EB-A431-01 12 122413481 122413481 C T WDR66 Missense_Mutation p.R966C 0.31 tolerated(0.07) benign(0.097) TCGA-EB-A431-01 12 123262119 123262119 C T CCDC62 Nonsense_Mutation p.R40* 0.17 TCGA-EB-A431-01 12 123340686 123340686 C T HIP1R Nonsense_Mutation p.Q430* 0.29 TCGA-EB-A431-01 12 124071410 124071410 C T TMED2 Silent p.S99S 0.28 TCGA-EB-A431-01 12 124118247 124118247 T G EIF2B1 5'UTR 0.35 TCGA-EB-A431-01 12 124359881 124359881 G A DNAH10 Missense_Mutation p.R2563Q 0.17 benign(0.206) TCGA-EB-A431-01 12 12483048 12483048 G A MANSC1 Silent p.L403L 0.27 TCGA-EB-A431-01 12 126138159 126138159 C T TMEM132B Missense_Mutation p.P714S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 12 129569278 129569278 G A TMEM132D Intron 0.31 TCGA-EB-A431-01 12 130185017 130185017 G A TMEM132D Silent p.I102I 0.25 TCGA-EB-A431-01 12 130841494 130841494 C T PIWIL1 Missense_Mutation p.S479F 0.16 deleterious(0.01) possibly_damaging(0.794) TCGA-EB-A431-01 12 130919362 130919362 C T RIMBP2 Missense_Mutation p.E707K 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 12 131471681 131471681 G A GPR133 Missense_Mutation p.E178K 0.30 deleterious(0.01) probably_damaging(0.951) TCGA-EB-A431-01 12 13233579 13233579 C T KIAA1467 3'UTR 0.25 TCGA-EB-A431-01 12 132398367 132398367 C T ULK1 Silent p.S411S 0.21 TCGA-EB-A431-01 12 132534888 132534888 C T EP400 Silent p.L2407L 0.19 TCGA-EB-A431-01 12 14689583 14689583 G A PLBD1 Missense_Mutation p.P207L 0.14 tolerated(0.06) possibly_damaging(0.712) TCGA-EB-A431-01 12 15733008 15733008 G A PTPRO Missense_Mutation p.E986K 0.31 tolerated(0.17) benign(0.174) TCGA-EB-A431-01 12 15818773 15818773 G A EPS8 Missense_Mutation p.P218L 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 12 18552648 18552648 G A PIK3C2G Missense_Mutation p.E687K 0.18 deleterious(0.05) benign(0.314) TCGA-EB-A431-01 12 2061788 2061788 G A DCP1B Nonsense_Mutation p.Q440* 0.37 TCGA-EB-A431-01 12 20792812 20792812 C T PDE3A Silent p.L724L 0.14 TCGA-EB-A431-01 12 20803457 20803457 G A PDE3A Missense_Mutation p.D950N 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.20 deleterious(0) probably_damaging(0.993) TCGA-EB-A431-01 12 2595382 2595382 C T CACNA1C Silent p.F290F 0.23 TCGA-EB-A431-01 12 2702491 2702491 C T CACNA1C Silent p.F881F 0.14 TCGA-EB-A431-01 12 2706605 2706605 C T CACNA1C Silent p.I952I 0.28 TCGA-EB-A431-01 12 27069111 27069111 G A ASUN Missense_Mutation p.R358C 0.24 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 12 27069112 27069112 A C ASUN Silent p.G357G 0.23 TCGA-EB-A431-01 12 2968039 2968039 G A FOXM1 Missense_Mutation p.S724F 0.28 tolerated(0.05) possibly_damaging(0.73) TCGA-EB-A431-01 12 32137076 32137076 C T KIAA1551 Missense_Mutation p.P1063S 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 12 33031228 33031228 G A PKP2 Missense_Mutation p.R196C 0.34 deleterious(0) probably_damaging(0.97) TCGA-EB-A431-01 12 33538124 33538124 C T SYT10 Missense_Mutation p.D394N 0.36 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 12 40258627 40258627 G A SLC2A13 Missense_Mutation p.S419F 0.57 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 12 40668655 40668655 G T LRRK2 Splice_Site p.X601_splice 0.25 TCGA-EB-A431-01 12 432368 432368 G A KDM5A Missense_Mutation p.R719C 0.53 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 12 4479941 4479941 G A FGF23 Silent p.F108F 0.21 TCGA-EB-A431-01 12 46594906 46594906 G A SLC38A1 Silent p.A326A 0.33 TCGA-EB-A431-01 12 46633487 46633487 C T SLC38A1 Missense_Mutation p.E33K 0.24 tolerated(0.27) benign(0.206) TCGA-EB-A431-01 12 47629785 47629785 C T PCED1B Silent p.L313L 0.28 TCGA-EB-A431-01 12 48468176 48468176 G A SENP1 Missense_Mutation p.H291Y 0.15 tolerated(0.44) benign(0) TCGA-EB-A431-01 12 4870250 4870250 G A GALNT8 Missense_Mutation p.E434K 0.28 deleterious(0) possibly_damaging(0.676) TCGA-EB-A431-01 12 48963761 48963761 G A LALBA Missense_Mutation p.P15S 0.39 tolerated(0.12) benign(0.033) TCGA-EB-A431-01 12 49168221 49168221 G A ADCY6 Silent p.S749S 0.42 TCGA-EB-A431-01 12 49169835 49169835 G A ADCY6 Missense_Mutation p.R573W 0.20 deleterious(0) probably_damaging(0.991) TCGA-EB-A431-01 12 49218504 49218504 C T CACNB3 Missense_Mutation p.P154S 0.14 deleterious(0.02) benign(0.354) TCGA-EB-A431-01 12 49425497 49425497 G A KMT2D Missense_Mutation p.P4331S 0.22 unknown(0) TCGA-EB-A431-01 12 50190616 50190616 G A NCKAP5L Silent p.L343L 0.24 TCGA-EB-A431-01 12 5020958 5020958 G A KCNA1 Silent p.K138K 0.17 TCGA-EB-A431-01 12 51442117 51442117 C T LETMD1 5'Flank 0.20 TCGA-EB-A431-01 12 51865141 51865141 C T SLC4A8 Missense_Mutation p.L577F 0.19 deleterious(0.03) probably_damaging(1) TCGA-EB-A431-01 12 52100487 52100487 C T SCN8A Silent p.S541S 0.43 TCGA-EB-A431-01 12 52312843 52312843 G A ACVRL1 Missense_Mutation p.V441M 0.23 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 12 52574367 52574367 C T KRT80 Missense_Mutation p.R199Q 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-EB-A431-01 12 52699979 52699979 G A KRT86 Missense_Mutation p.E388K 0.23 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 12 52757894 52757894 G A KRT85 Silent p.A248A 0.46 TCGA-EB-A431-01 12 53007540 53007540 C T KRT73 Missense_Mutation p.V306I 0.20 deleterious(0.04) benign(0.181) TCGA-EB-A431-01 12 53010066 53010066 G A KRT73 Silent p.I182I 0.18 TCGA-EB-A431-01 12 53068808 53068808 C T KRT1 3'UTR 0.17 TCGA-EB-A431-01 12 53165724 53165724 C T KRT76 Silent p.K398K 0.23 TCGA-EB-A431-01 12 53202631 53202631 G A KRT4 Silent p.L280L 0.62 TCGA-EB-A431-01 12 53205639 53205639 C T KRT4 Silent p.L195L 0.45 TCGA-EB-A431-01 12 53567532 53567532 G A CSAD Missense_Mutation p.P19S 0.35 tolerated_low_confidence(0.3) benign(0.032) TCGA-EB-A431-01 12 53839812 53839812 C T PRR13 Missense_Mutation p.S139F 0.57 tolerated_low_confidence(0.16) unknown(0) TCGA-EB-A431-01 12 54686197 54686197 G A NFE2 Silent p.F361F 0.69 TCGA-EB-A431-01 12 55039412 55039412 C T DCD Silent p.R59R 0.14 TCGA-EB-A431-01 12 55039413 55039413 C T DCD Missense_Mutation p.R59K 0.14 tolerated_low_confidence(0.67) benign(0.14) TCGA-EB-A431-01 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-EB-A431-01 12 56031087 56031087 A C OR10P1 Missense_Mutation p.S138R 0.18 deleterious(0.01) benign(0.197) TCGA-EB-A431-01 12 56625136 56625136 C T SLC39A5 Silent p.V26V 0.23 TCGA-EB-A431-01 12 56742739 56742739 G A STAT2 Silent p.D515D 0.17 TCGA-EB-A431-01 12 57038852 57038852 A G ATP5B Intron 0.22 TCGA-EB-A431-01 12 57109933 57109933 G A NACA Missense_Mutation p.P641L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-EB-A431-01 12 57111380 57111380 G A NACA Intron 0.15 TCGA-EB-A431-01 12 57585270 57585270 C T LRP1 Silent p.I2468I 0.15 TCGA-EB-A431-01 12 57961392 57961392 G A KIF5A Silent p.G235G 0.20 TCGA-EB-A431-01 12 58007169 58007169 C T ARHGEF25 Intron 0.27 TCGA-EB-A431-01 12 58018355 58018355 T G SLC26A10 Intron 0.25 TCGA-EB-A431-01 12 58151834 58151834 C T MARCH9 Intron 0.31 TCGA-EB-A431-01 12 6128270 6128270 G A VWF Silent p.F1438F 0.25 TCGA-EB-A431-01 12 6204669 6204669 G A VWF Missense_Mutation p.P205L 0.26 tolerated(0.07) benign(0.015) TCGA-EB-A431-01 12 6204741 6204741 G A VWF Missense_Mutation p.T181I 0.18 deleterious(0.03) probably_damaging(0.974) TCGA-EB-A431-01 12 6428054 6428054 C T PLEKHG6 Intron 0.22 TCGA-EB-A431-01 12 6457212 6457212 G A SCNN1A Missense_Mutation p.P672S 0.29 tolerated(0.48) benign(0.004) TCGA-EB-A431-01 12 64679749 64679749 C T C12orf56 Missense_Mutation p.R242K 0.32 deleterious(0.03) possibly_damaging(0.799) TCGA-EB-A431-01 12 6570038 6570038 G A TAPBPL Missense_Mutation p.G409R 0.32 deleterious(0) probably_damaging(0.979) TCGA-EB-A431-01 12 66786546 66786546 C T GRIP1 Missense_Mutation p.S675N 0.25 deleterious(0) possibly_damaging(0.854) TCGA-EB-A431-01 12 6700880 6700880 G A CHD4 Missense_Mutation p.R1068C 0.18 deleterious(0) possibly_damaging(0.876) TCGA-EB-A431-01 12 68595678 68595678 C T IL26 Missense_Mutation p.E155K 0.30 deleterious(0) possibly_damaging(0.589) TCGA-EB-A431-01 12 69120309 69120309 C T NUP107 Missense_Mutation p.S536F 0.68 deleterious(0.03) possibly_damaging(0.701) TCGA-EB-A431-01 12 6935405 6935405 C T GPR162 Missense_Mutation p.R368C 0.19 deleterious(0) possibly_damaging(0.818) TCGA-EB-A431-01 12 7066933 7066933 C T PTPN6 Silent p.V397V 0.28 TCGA-EB-A431-01 12 72366312 72366312 C T TPH2 Missense_Mutation p.P208S 0.39 deleterious(0) possibly_damaging(0.547) TCGA-EB-A431-01 12 7254530 7254530 G A C1RL Missense_Mutation p.L152F 0.27 tolerated(0.6) benign(0.02) TCGA-EB-A431-01 12 7285598 7285598 C T CLSTN3 Intron 0.60 TCGA-EB-A431-01 12 7457016 7457016 G A ACSM4 Nonsense_Mutation p.W30* 0.23 TCGA-EB-A431-01 12 7473398 7473398 G A ACSM4 Silent p.K333K 0.29 TCGA-EB-A431-01 12 7528464 7528464 C T CD163L1 Missense_Mutation p.D840N 0.32 tolerated(0.17) benign(0.14) TCGA-EB-A431-01 12 7586098 7586098 C T CD163L1 Missense_Mutation p.R106K 0.33 deleterious(0.04) benign(0.018) TCGA-EB-A431-01 12 7640083 7640083 C T CD163 Missense_Mutation p.G641E 0.17 tolerated(0.09) benign(0.35) TCGA-EB-A431-01 12 78444685 78444685 C T NAV3 Silent p.S758S 0.12 TCGA-EB-A431-01 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.26 tolerated(0.06) possibly_damaging(0.542) TCGA-EB-A431-01 12 7945562 7945562 C T NANOG Silent p.S56S 0.24 TCGA-EB-A431-01 12 81719615 81719615 C T PPFIA2 Silent p.E861E 0.47 TCGA-EB-A431-01 12 88376927 88376927 C T C12orf50 Missense_Mutation p.R391Q 0.18 deleterious(0.01) benign(0.211) TCGA-EB-A431-01 12 91445196 91445196 C T KERA Missense_Mutation p.G329E 0.35 deleterious(0) probably_damaging(0.96) TCGA-EB-A431-01 12 9354971 9354971 G A PZP Intron 0.20 TCGA-EB-A431-01 12 96384281 96384281 C T HAL Missense_Mutation p.G249R 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 13 100523245 100523245 C T CLYBL Missense_Mutation p.P286S 0.67 deleterious(0.03) possibly_damaging(0.74) TCGA-EB-A431-01 13 110814670 110814670 C T COL4A1 Missense_Mutation p.D1457N 0.46 unknown(0) TCGA-EB-A431-01 13 20048155 20048155 G A TPTE2 Silent p.F97F 0.21 TCGA-EB-A431-01 13 23910931 23910931 G A SACS Missense_Mutation p.H2362Y 0.25 benign(0.017) TCGA-EB-A431-01 13 31498641 31498641 G A MEDAG 3'UTR 0.17 TCGA-EB-A431-01 13 32768380 32768380 C T FRY Missense_Mutation p.S1231F 0.35 deleterious(0) probably_damaging(0.979) TCGA-EB-A431-01 13 33635443 33635443 C T KL Nonsense_Mutation p.Q743* 0.24 TCGA-EB-A431-01 13 33703977 33703977 C T STARD13 Silent p.G279G 0.20 TCGA-EB-A431-01 13 35644898 35644898 C T NBEA Missense_Mutation p.H494Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 13 39265883 39265883 C T FREM2 Missense_Mutation p.H1468Y 0.24 deleterious(0.04) benign(0.304) TCGA-EB-A431-01 13 41650183 41650183 C T WBP4 Missense_Mutation p.S189F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 13 41767331 41767331 G A KBTBD7 Missense_Mutation p.P355S 0.18 tolerated(0.27) benign(0.407) TCGA-EB-A431-01 13 49039343 49039343 C T RB1 Silent p.P776P 0.23 TCGA-EB-A431-01 13 49073883 49073883 G A RCBTB2 Missense_Mutation p.R420C 0.23 deleterious(0) possibly_damaging(0.727) TCGA-EB-A431-01 13 50279880 50279880 A C KPNA3 Missense_Mutation p.C417G 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 13 52439468 52439468 G A CCDC70 Intron 0.27 TCGA-EB-A431-01 13 52439989 52439989 G A CCDC70 Missense_Mutation p.E159K 0.33 deleterious(0) probably_damaging(0.924) TCGA-EB-A431-01 13 52520438 52520438 G A ATP7B Silent p.P1014P 0.29 TCGA-EB-A431-01 13 58206708 58206708 C T PCDH17 Missense_Mutation p.L10F 0.44 tolerated(0.06) benign(0.005) TCGA-EB-A431-01 13 67802121 67802121 A T PCDH9 Missense_Mutation p.I151N 0.35 deleterious(0) probably_damaging(0.99) TCGA-EB-A431-01 13 72063167 72063167 C T DACH1 Missense_Mutation p.G564R 0.34 benign(0.211) TCGA-EB-A431-01 13 93879629 93879629 C T GPC6 5'UTR 0.28 TCGA-EB-A431-01 13 96485297 96485297 G A UGGT2 Missense_Mutation p.P1471L 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 13 99362124 99362124 T A SLC15A1 Missense_Mutation p.K314N 0.47 tolerated(0.81) benign(0.001) TCGA-EB-A431-01 13 99519711 99519711 G A DOCK9 Missense_Mutation p.P1085L 0.54 tolerated(0.2) benign(0.025) TCGA-EB-A431-01 14 100380551 100380551 C T EML1 Silent p.A529A 0.19 TCGA-EB-A431-01 14 100613057 100613057 C T DEGS2 3'UTR 0.69 TCGA-EB-A431-01 14 101201053 101201053 C T DLK1 Silent p.I324I 0.31 TCGA-EB-A431-01 14 101449268 101449268 C T SNORD114-22 RNA 0.56 TCGA-EB-A431-01 14 101513724 101513724 C T MIR539 RNA 0.46 TCGA-EB-A431-01 14 102027870 102027870 G A DIO3 Missense_Mutation p.E13K 0.18 tolerated_low_confidence(0.16) benign(0.049) TCGA-EB-A431-01 14 104490994 104490994 C T TDRD9 Missense_Mutation p.L899F 0.23 tolerated(0.38) benign(0.021) TCGA-EB-A431-01 14 105054105 105054105 C T C14orf180 Missense_Mutation p.P44L 0.75 deleterious(0.03) probably_damaging(0.988) TCGA-EB-A431-01 14 105180906 105180906 C T INF2 Missense_Mutation p.S1136F 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EB-A431-01 14 105861034 105861034 C T PACS2 3'UTR 0.61 TCGA-EB-A431-01 14 106586400 106586400 C T IGHV3-13 Missense_Mutation p.G29S 0.54 deleterious_low_confidence(0.01) benign(0.176) TCGA-EB-A431-01 14 106667749 106667749 C T IGHV3-20 Silent p.G61G 0.31 TCGA-EB-A431-01 14 106994006 106994006 C T IGHV3-48 Missense_Mutation p.M53I 0.64 deleterious_low_confidence(0.02) benign(0.062) TCGA-EB-A431-01 14 107078521 107078521 C T IGHV1-58 Missense_Mutation p.G68E 0.59 possibly_damaging(0.5) TCGA-EB-A431-01 14 107199151 107199151 G A IGHV3-72 Silent p.F46F 0.62 TCGA-EB-A431-01 14 19574200 19574200 G A POTEG Missense_Mutation p.M419I 0.38 tolerated(0.14) benign(0.001) TCGA-EB-A431-01 14 20389661 20389661 G A OR4K5 Missense_Mutation p.R299K 0.35 tolerated(0.7) benign(0.001) TCGA-EB-A431-01 14 20502406 20502406 G A OR4K13 Missense_Mutation p.P171L 0.52 deleterious(0) possibly_damaging(0.862) TCGA-EB-A431-01 14 20586509 20586509 C T OR4K17 Missense_Mutation p.P315L 0.35 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 14 21360026 21360026 C T RNASE3 Nonsense_Mutation p.R61* 0.62 TCGA-EB-A431-01 14 21462981 21462981 T A METTL17 Missense_Mutation p.F266Y 0.25 tolerated(0.44) benign(0.133) TCGA-EB-A431-01 14 21793077 21793077 C T RPGRIP1 Missense_Mutation p.S688L 0.33 tolerated(0.05) possibly_damaging(0.821) TCGA-EB-A431-01 14 22090685 22090685 G A TRAV1-1 Missense_Mutation p.M97I 0.67 tolerated(0.49) benign(0.012) TCGA-EB-A431-01 14 22133434 22133434 C T OR4E2 Silent p.I46I 0.63 TCGA-EB-A431-01 14 22476278 22476278 C T TRAV19 Missense_Mutation p.R70C 0.55 deleterious(0.05) benign(0.105) TCGA-EB-A431-01 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.31 tolerated_low_confidence(0.11) benign(0.004) TCGA-EB-A431-01 14 23894098 23894098 C T MYH7 Silent p.K853K 0.31 TCGA-EB-A431-01 14 23938907 23938907 G A NGDN 5'UTR 0.51 TCGA-EB-A431-01 14 23938908 23938908 G A NGDN 5'UTR 0.51 TCGA-EB-A431-01 14 24807743 24807743 C T RIPK3 Missense_Mutation p.G168R 0.43 tolerated(0.29) benign(0.392) TCGA-EB-A431-01 14 24897527 24897527 G A CBLN3 Missense_Mutation p.H129Y 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A431-01 14 26941582 26941582 G A NOVA1 Missense_Mutation p.P155S 0.83 tolerated(0.17) unknown(0) TCGA-EB-A431-01 14 36125020 36125020 G A RALGAPA1 Missense_Mutation p.S1324F 0.59 deleterious(0) possibly_damaging(0.864) TCGA-EB-A431-01 14 45473543 45473543 C T FAM179B Missense_Mutation p.S873L 0.35 tolerated(0.06) benign(0.013) TCGA-EB-A431-01 14 50176463 50176463 C T KLHDC1 Silent p.S68S 0.68 TCGA-EB-A431-01 14 52734706 52734706 C T PTGDR Silent p.P58P 0.25 TCGA-EB-A431-01 14 56757077 56757077 C T PELI2 Missense_Mutation p.T200I 0.31 tolerated(0.4) benign(0.291) TCGA-EB-A431-01 14 58953768 58953768 C T KIAA0586 Missense_Mutation p.P1116L 0.65 deleterious(0) probably_damaging(0.964) TCGA-EB-A431-01 14 59113049 59113049 C T DACT1 Missense_Mutation p.H570Y 0.27 deleterious(0.01) benign(0.409) TCGA-EB-A431-01 14 62207603 62207603 G A HIF1A Missense_Mutation p.S621N 0.33 tolerated(0.33) benign(0.002) TCGA-EB-A431-01 14 63417184 63417184 C T KCNH5 Missense_Mutation p.A346T 0.76 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 14 70713106 70713106 G A ADAM21P1 RNA 0.46 TCGA-EB-A431-01 14 70713107 70713107 G A ADAM21P1 RNA 0.46 TCGA-EB-A431-01 14 73422349 73422349 C T DCAF4 Missense_Mutation p.S375F 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 14 73720551 73720551 C T PAPLN Missense_Mutation p.A368V 0.63 tolerated(0.06) possibly_damaging(0.682) TCGA-EB-A431-01 14 73987679 73987679 C T HEATR4 Missense_Mutation p.D316N 0.30 tolerated(0.13) benign(0.048) TCGA-EB-A431-01 14 73987680 73987680 C T HEATR4 Silent p.E315E 0.29 TCGA-EB-A431-01 14 74876383 74876383 G A SYNDIG1L Missense_Mutation p.P22L 0.62 tolerated(0.65) benign(0.036) TCGA-EB-A431-01 14 74976483 74976483 G A LTBP2 Silent p.A1077A 0.63 TCGA-EB-A431-01 14 75276987 75276987 C T YLPM1 Missense_Mutation p.R1698C 0.43 probably_damaging(0.978) TCGA-EB-A431-01 14 76249582 76249582 C T TTLL5 Missense_Mutation p.H899Y 0.23 tolerated(0.66) benign(0.315) TCGA-EB-A431-01 14 76621053 76621053 C T GPATCH2L Missense_Mutation p.S116F 0.30 tolerated(0.58) probably_damaging(0.948) TCGA-EB-A431-01 14 76965164 76965164 C T ESRRB Intron 0.16 TCGA-EB-A431-01 14 77242566 77242566 G A VASH1 Missense_Mutation p.D288N 0.15 tolerated(0.12) benign(0.087) TCGA-EB-A431-01 14 77705806 77705806 C T TMEM63C Silent p.V259V 0.44 TCGA-EB-A431-01 14 81744344 81744344 C T STON2 Silent p.K437K 0.60 TCGA-EB-A431-01 14 90429700 90429700 C T TDP1 Missense_Mutation p.S81F 0.58 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-EB-A431-01 14 92088211 92088211 G A CATSPERB Silent p.L667L 0.30 TCGA-EB-A431-01 14 92136196 92136196 G A CATSPERB Missense_Mutation p.H417Y 0.69 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 14 94756848 94756848 G A SERPINA10 Missense_Mutation p.S28L 0.62 tolerated(0.25) benign(0.152) TCGA-EB-A431-01 14 94770903 94770903 C T SERPINA6 Missense_Mutation p.G357D 0.61 tolerated(0.08) possibly_damaging(0.654) TCGA-EB-A431-01 14 96131359 96131359 G A TCL6 RNA 0.45 TCGA-EB-A431-01 14 96917772 96917772 C T AK7 Silent p.D321D 0.25 TCGA-EB-A431-01 14 99641339 99641339 C T BCL11B Missense_Mutation p.E612K 0.26 deleterious(0.04) benign(0.067) TCGA-EB-A431-01 14 99641751 99641751 C T BCL11B Missense_Mutation p.M474I 0.27 deleterious(0) probably_damaging(0.985) TCGA-EB-A431-01 15 100332360 100332361 GG A AC090825.1 5'Flank 0.17 TCGA-EB-A431-01 15 101775564 101775564 C T CHSY1 Missense_Mutation p.R180H 0.13 deleterious(0) benign(0.416) TCGA-EB-A431-01 15 102198024 102198024 G A TARSL2 Silent p.I703I 0.24 TCGA-EB-A431-01 15 20170153 20170153 G A IGHV1OR15-9 Missense_Mutation p.S40F 0.34 deleterious(0.01) probably_damaging(0.955) TCGA-EB-A431-01 15 23443526 23443526 G A AC100757.1 5'Flank 0.41 TCGA-EB-A431-01 15 23890790 23890790 C T MAGEL2 Silent p.P97P 0.21 TCGA-EB-A431-01 15 24922244 24922244 C T NPAP1 Silent p.S410S 0.38 TCGA-EB-A431-01 15 24922455 24922455 G A NPAP1 Missense_Mutation p.G481R 0.12 tolerated(0.05) probably_damaging(0.93) TCGA-EB-A431-01 15 24922456 24922456 G A NPAP1 Missense_Mutation p.G481E 0.12 tolerated(0.26) benign(0.206) TCGA-EB-A431-01 15 24922816 24922816 C A NPAP1 Missense_Mutation p.P601Q 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-EB-A431-01 15 25434598 25434598 G T SNORD115-11 RNA 0.15 TCGA-EB-A431-01 15 25479302 25479302 C T SNORD115-33 3'Flank 0.19 TCGA-EB-A431-01 15 25620815 25620815 G A UBE3A Missense_Mutation p.S56F 0.15 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 15 28459414 28459414 G A HERC2 Silent p.S2121S 0.30 TCGA-EB-A431-01 15 31294925 31294925 G A TRPM1 Silent p.F1343F 0.37 TCGA-EB-A431-01 15 32450613 32450613 G A CHRNA7 Missense_Mutation p.G229E 0.18 tolerated(0.21) benign(0.264) TCGA-EB-A431-01 15 34640749 34640749 C T NUTM1 Missense_Mutation p.S199F 0.17 deleterious(0) probably_damaging(0.964) TCGA-EB-A431-01 15 34649626 34649626 G A NUTM1 Silent p.Q1111Q 0.22 TCGA-EB-A431-01 15 35529790 35529790 G A ANP32AP1 RNA 0.24 TCGA-EB-A431-01 15 39892985 39892985 C T FSIP1 3'UTR 0.36 TCGA-EB-A431-01 15 40094426 40094426 C T GPR176 Missense_Mutation p.R152K 0.20 tolerated(0.92) benign(0.381) TCGA-EB-A431-01 15 40475946 40475946 C T BUB1B Silent p.L205L 0.17 TCGA-EB-A431-01 15 40662562 40662562 G A DISP2 3'UTR 0.24 TCGA-EB-A431-01 15 40662616 40662616 C T DISP2 3'UTR 0.17 TCGA-EB-A431-01 15 41106185 41106185 C T ZFYVE19 Silent p.L418L 0.19 TCGA-EB-A431-01 15 41863828 41863828 C T TYRO3 Missense_Mutation p.L566F 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 15 42166142 42166142 G A SPTBN5 Silent p.I1597I 0.48 TCGA-EB-A431-01 15 42434879 42434879 G A PLA2G4F Nonsense_Mutation p.R726* 0.62 TCGA-EB-A431-01 15 43473391 43473391 T G TMEM62 Missense_Mutation p.F500C 0.11 deleterious(0.04) benign(0.004) TCGA-EB-A431-01 15 43548796 43548796 C T TGM5 Nonsense_Mutation p.W175* 0.18 TCGA-EB-A431-01 15 43712768 43712768 G A TP53BP1 Silent p.F1472F 0.31 TCGA-EB-A431-01 15 44806847 44806847 C T CTDSPL2 Nonsense_Mutation p.Q341* 0.22 TCGA-EB-A431-01 15 45386869 45386869 G A DUOX2 Silent p.F1472F 0.16 TCGA-EB-A431-01 15 48829839 48829839 G A FBN1 Silent p.F235F 0.15 TCGA-EB-A431-01 15 49935604 49935604 T G DTWD1 Silent p.L248L 0.42 TCGA-EB-A431-01 15 50546416 50546416 G A HDC Silent p.L211L 0.22 TCGA-EB-A431-01 15 50888521 50888521 G A TRPM7 Missense_Mutation p.P1074L 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 15 52356617 52356617 C T MAPK6 Missense_Mutation p.S529F 0.17 deleterious_low_confidence(0.03) benign(0.159) TCGA-EB-A431-01 15 54306787 54306787 G A UNC13C Missense_Mutation p.D563N 0.37 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-EB-A431-01 15 54307319 54307319 C T UNC13C Missense_Mutation p.S740F 0.17 tolerated_low_confidence(0.06) benign(0.002) TCGA-EB-A431-01 15 54630558 54630558 G A UNC13C Splice_Site p.X1529_splice 0.20 TCGA-EB-A431-01 15 54630614 54630614 G A UNC13C Missense_Mutation p.R1547K 0.20 tolerated_low_confidence(1) benign(0.039) TCGA-EB-A431-01 15 58467161 58467161 G A AQP9 Missense_Mutation p.E141K 0.59 tolerated(0.06) possibly_damaging(0.733) TCGA-EB-A431-01 15 59934455 59934455 G A GTF2A2 Silent p.L62L 0.24 TCGA-EB-A431-01 15 62232944 62232944 G A VPS13C Missense_Mutation p.P1835S 0.57 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 15 62989974 62989974 C T TLN2 Silent p.S460S 0.15 TCGA-EB-A431-01 15 63555829 63555829 C T RAB8B 3'UTR 0.26 TCGA-EB-A431-01 15 63618451 63618451 C T CA12 3'UTR 0.24 TCGA-EB-A431-01 15 65108449 65108449 G A PIF1 3'UTR 0.24 TCGA-EB-A431-01 15 65892171 65892171 G A VWA9 Missense_Mutation p.P86S 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-EB-A431-01 15 66857072 66857072 C T LCTL Missense_Mutation p.G75E 0.54 deleterious(0.01) benign(0.25) TCGA-EB-A431-01 15 67692517 67692517 G A IQCH Missense_Mutation p.M657I 0.31 tolerated(0.51) benign(0.009) TCGA-EB-A431-01 15 68119352 68119352 C T SKOR1 Missense_Mutation p.P503S 0.23 deleterious_low_confidence(0.01) benign(0.193) TCGA-EB-A431-01 15 69079845 69079845 C T ANP32A Silent p.G78G 0.46 TCGA-EB-A431-01 15 69561262 69561262 C T GLCE Silent p.G511G 0.46 TCGA-EB-A431-01 15 72189840 72189840 G A MYO9A Silent p.P1668P 0.17 TCGA-EB-A431-01 15 72638969 72638969 G A HEXA Missense_Mutation p.A410V 0.30 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A431-01 15 72958033 72958033 G A GOLGA6B Missense_Mutation p.G564S 0.19 tolerated(0.41) probably_damaging(0.935) TCGA-EB-A431-01 15 73558715 73558715 C T NEO1 Silent p.I819I 0.48 TCGA-EB-A431-01 15 74180060 74180060 G A TBC1D21 Missense_Mutation p.G293R 0.17 tolerated(0.15) benign(0.052) TCGA-EB-A431-01 15 74284463 74284463 G A STOML1 Silent p.S34S 0.14 TCGA-EB-A431-01 15 75042167 75042167 G T CYP1A2 Missense_Mutation p.G30C 0.35 tolerated(0.18) possibly_damaging(0.482) TCGA-EB-A431-01 15 75042488 75042488 C T CYP1A2 Missense_Mutation p.R137W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 15 75044133 75044133 C T CYP1A2 Missense_Mutation p.S327F 0.45 tolerated(0.1) possibly_damaging(0.453) TCGA-EB-A431-01 15 76075529 76075529 G A RN7SL319P 5'Flank 0.09 TCGA-EB-A431-01 15 76170311 76170311 C T UBE2Q2 Missense_Mutation p.S228L 0.51 deleterious(0) possibly_damaging(0.879) TCGA-EB-A431-01 15 76209645 76209645 C T FBXO22 Missense_Mutation p.P180S 0.62 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 15 76633484 76633484 G A ISL2 Missense_Mutation p.G269R 0.10 deleterious(0.03) probably_damaging(0.984) TCGA-EB-A431-01 15 79058520 79058520 G A ADAMTS7 Missense_Mutation p.P1245S 0.11 tolerated(0.68) benign(0.003) TCGA-EB-A431-01 15 79058521 79058521 G A ADAMTS7 Silent p.S1244S 0.10 TCGA-EB-A431-01 15 79069818 79069818 C T ADAMTS7 Missense_Mutation p.G479R 0.27 deleterious(0) probably_damaging(0.931) TCGA-EB-A431-01 15 79304855 79304855 C T RASGRF1 Missense_Mutation p.G614E 0.46 tolerated(1) benign(0.003) TCGA-EB-A431-01 15 80845042 80845042 C T ARNT2 Missense_Mutation p.S339F 0.21 deleterious(0) probably_damaging(0.97) TCGA-EB-A431-01 15 80845043 80845043 C T ARNT2 Silent p.S339S 0.21 TCGA-EB-A431-01 15 81171181 81171181 G A KIAA1199 Missense_Mutation p.V72I 0.15 tolerated(0.1) benign(0.047) TCGA-EB-A431-01 15 81229049 81229049 G A KIAA1199 Missense_Mutation p.R1015Q 0.22 tolerated(0.29) benign(0.002) TCGA-EB-A431-01 15 86124902 86124902 C T AKAP13 Silent p.L1201L 0.24 TCGA-EB-A431-01 15 86940730 86940730 C T AGBL1 Silent p.I790I 0.20 TCGA-EB-A431-01 15 88472375 88472375 G A NTRK3 Intron 0.19 TCGA-EB-A431-01 15 88483956 88483956 G A NTRK3 Silent p.I538I 0.09 TCGA-EB-A431-01 15 88799408 88799408 G A NTRK3 Intron 0.30 TCGA-EB-A431-01 15 89398514 89398514 G A ACAN Missense_Mutation p.D900N 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A431-01 15 89744054 89744054 C T ABHD2 3'UTR 0.19 TCGA-EB-A431-01 15 89753625 89753625 T A RLBP1 Missense_Mutation p.E282V 0.06 tolerated(0.07) benign(0.007) TCGA-EB-A431-01 15 89805055 89805055 T A FANCI Missense_Mutation p.V150E 0.64 tolerated(1) benign(0) TCGA-EB-A431-01 15 90020801 90020801 G A RHCG Silent p.I353I 0.10 TCGA-EB-A431-01 15 90190149 90190149 G A KIF7 Missense_Mutation p.P567L 0.13 deleterious(0) possibly_damaging(0.764) TCGA-EB-A431-01 15 90342782 90342782 C T ANPEP Missense_Mutation p.D610N 0.14 tolerated(0.57) benign(0.001) TCGA-EB-A431-01 15 90344760 90344760 G A ANPEP Missense_Mutation p.P550S 0.16 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 15 90774220 90774220 G A CIB1 Missense_Mutation p.T167I 0.07 deleterious(0.03) probably_damaging(1) TCGA-EB-A431-01 15 91424898 91424898 C T FURIN Silent p.I725I 0.06 TCGA-EB-A431-01 15 91428316 91428316 G A FES Missense_Mutation p.G14E 0.07 tolerated(1) benign(0.015) TCGA-EB-A431-01 15 91513659 91513659 G T PRC1 Missense_Mutation p.S516Y 0.04 tolerated(0.46) possibly_damaging(0.811) TCGA-EB-A431-01 15 91795105 91795105 G A SV2B Missense_Mutation p.D170N 0.06 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 15 92459540 92459540 C T SLCO3A1 Silent p.I166I 0.48 TCGA-EB-A431-01 15 92977603 92977603 C T ST8SIA2 Silent p.I96I 0.22 TCGA-EB-A431-01 15 93015490 93015490 G A C15orf32 Missense_Mutation p.G38R 0.06 tolerated_low_confidence(0.2) benign(0.182) TCGA-EB-A431-01 15 93015491 93015491 G A C15orf32 Missense_Mutation p.G38E 0.06 tolerated_low_confidence(1) benign(0.003) TCGA-EB-A431-01 15 93015564 93015564 C T C15orf32 Silent p.A62A 0.16 TCGA-EB-A431-01 15 93609214 93609214 G A RGMA Intron 0.20 TCGA-EB-A431-01 15 94841486 94841486 C T MCTP2 5'Flank 0.19 TCGA-EB-A431-01 15 94943183 94943183 G A MCTP2 Missense_Mutation p.E642K 0.17 deleterious(0.02) possibly_damaging(0.486) TCGA-EB-A431-01 15 95013640 95013640 C T MCTP2 Silent p.F813F 0.45 TCGA-EB-A431-01 16 10524487 10524487 C T ATF7IP2 Missense_Mutation p.P4S 0.49 tolerated(0.16) benign(0.406) TCGA-EB-A431-01 16 11001416 11001416 G A CIITA Silent p.A689A 0.47 TCGA-EB-A431-01 16 11220068 11220068 T A CLEC16A Intron 0.27 TCGA-EB-A431-01 16 1128891 1128891 C T SSTR5 Missense_Mutation p.S8F 0.48 tolerated(0.06) benign(0.003) TCGA-EB-A431-01 16 12875119 12875119 G A CPPED1 Missense_Mutation p.A71V 0.31 deleterious(0.04) probably_damaging(0.919) TCGA-EB-A431-01 16 14951475 14951475 C T NOMO1 Missense_Mutation p.P395S 0.55 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 16 15967478 15967478 A T FOPNL Silent p.L106L 0.62 TCGA-EB-A431-01 16 16215966 16215966 C T ABCC1 Silent p.I1175I 0.15 TCGA-EB-A431-01 16 16276733 16276733 C T ABCC6 Silent p.G666G 0.06 TCGA-EB-A431-01 16 16357074 16357074 T G NOMO3 Splice_Site p.X513_splice 0.41 TCGA-EB-A431-01 16 1715107 1715107 C T CRAMP1L Missense_Mutation p.S907F 0.19 deleterious(0) probably_damaging(0.987) TCGA-EB-A431-01 16 1812849 1812849 C T MAPK8IP3 Silent p.L579L 0.30 TCGA-EB-A431-01 16 19020694 19020694 C T TMC7 Missense_Mutation p.L90F 0.49 deleterious(0.01) benign(0.252) TCGA-EB-A431-01 16 19027793 19027793 G A TMC7 Missense_Mutation p.M111I 0.20 tolerated(0.85) benign(0.002) TCGA-EB-A431-01 16 19032984 19032984 C T TMC7 Missense_Mutation p.S165F 0.40 tolerated(0.23) possibly_damaging(0.704) TCGA-EB-A431-01 16 19047037 19047037 G A TMC7 Silent p.E299E 0.51 TCGA-EB-A431-01 16 19451539 19451539 G A TMC5 Missense_Mutation p.R60K 0.43 tolerated_low_confidence(0.1) benign(0.261) TCGA-EB-A431-01 16 20373828 20373828 G A PDILT Silent p.S438S 0.46 TCGA-EB-A431-01 16 20387498 20387498 G A PDILT Silent p.V145V 0.57 TCGA-EB-A431-01 16 20990868 20990868 C T DNAH3 Silent p.E2620E 0.42 TCGA-EB-A431-01 16 21212827 21212827 G A ZP2 Silent p.F519F 0.19 TCGA-EB-A431-01 16 2147900 2147900 G A PKD1 Missense_Mutation p.S3379F 0.38 probably_damaging(0.95) TCGA-EB-A431-01 16 22268607 22268607 C T EEF2K Missense_Mutation p.H268Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 16 23080226 23080226 G A USP31 Missense_Mutation p.S1067F 0.13 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-EB-A431-01 16 23226058 23226058 T A SCNN1G Missense_Mutation p.F507I 0.17 deleterious(0) probably_damaging(0.936) TCGA-EB-A431-01 16 23535604 23535604 G A EARS2 3'UTR 0.26 TCGA-EB-A431-01 16 23563520 23563520 C T EARS2 Missense_Mutation p.R82H 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 16 23700962 23700962 C T PLK1 Missense_Mutation p.L525F 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A431-01 16 24372711 24372711 G T CACNG3 Missense_Mutation p.A159S 0.16 tolerated(0.73) possibly_damaging(0.789) TCGA-EB-A431-01 16 2579508 2579508 C T AMDHD2 Nonsense_Mutation p.Q422* 0.47 TCGA-EB-A431-01 16 2762732 2762732 G A PRSS27 Silent p.A254A 0.27 TCGA-EB-A431-01 16 2812342 2812342 C T SRRM2 Missense_Mutation p.R605W 0.32 unknown(0) TCGA-EB-A431-01 16 28618277 28618277 C T SULT1A1 Missense_Mutation p.G165E 0.27 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 16 2881920 2881920 C T ZG16B Silent p.F129F 0.31 TCGA-EB-A431-01 16 28997730 28997730 C T LAT Silent p.S127S 0.43 TCGA-EB-A431-01 16 30364789 30364789 G A CD2BP2 Silent p.T236T 0.18 TCGA-EB-A431-01 16 30409857 30409857 T C ZNF48 Missense_Mutation p.L429S 0.54 tolerated(0.4) probably_damaging(0.994) TCGA-EB-A431-01 16 30521683 30521683 C T ITGAL Missense_Mutation p.P837L 0.07 deleterious(0.01) benign(0.3) TCGA-EB-A431-01 16 30529015 30529015 G A ITGAL Missense_Mutation p.D1008N 0.23 tolerated(0.61) benign(0.002) TCGA-EB-A431-01 16 30740881 30740881 C T SRCAP Nonsense_Mutation p.Q2039* 0.21 TCGA-EB-A431-01 16 30977133 30977133 C T SETD1A Missense_Mutation p.P644L 0.54 possibly_damaging(0.908) TCGA-EB-A431-01 16 31012882 31012882 G A STX1B Missense_Mutation p.R25W 0.35 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A431-01 16 31150422 31150422 G A PRSS36 3'UTR 0.25 TCGA-EB-A431-01 16 3119355 3119355 G A IL32 Silent p.%3D 0.08 TCGA-EB-A431-01 16 31335980 31335980 C T ITGAM Silent p.I723I 0.69 TCGA-EB-A431-01 16 313370 313370 C T ITFG3 Missense_Mutation p.R361C 0.17 tolerated(0.09) probably_damaging(0.949) TCGA-EB-A431-01 16 31483505 31483505 C T TGFB1I1 5'UTR 0.59 TCGA-EB-A431-01 16 31483506 31483506 C T TGFB1I1 5'UTR 0.59 TCGA-EB-A431-01 16 33020849 33020849 G A IGHV3OR16-8 Missense_Mutation p.R86Q 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-EB-A431-01 16 396796 396796 G A AXIN1 Missense_Mutation p.S77F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 16 4254615 4254615 C T SRL Missense_Mutation p.E28K 0.24 tolerated_low_confidence(0.67) benign(0.034) TCGA-EB-A431-01 16 48201518 48201518 C T ABCC11 Silent p.L1315L 0.44 TCGA-EB-A431-01 16 49670431 49670431 C T ZNF423 Missense_Mutation p.D878N 0.51 tolerated(0.22) benign(0.098) TCGA-EB-A431-01 16 50118112 50118112 C T HEATR3 Silent p.S400S 0.29 TCGA-EB-A431-01 16 5053488 5053488 G A SEC14L5 Missense_Mutation p.E406K 0.43 deleterious(0.01) benign(0.008) TCGA-EB-A431-01 16 5110367 5110367 C T C16orf89 Silent p.L143L 0.31 TCGA-EB-A431-01 16 51174373 51174373 G A SALL1 Missense_Mutation p.P587L 0.47 deleterious(0.02) benign(0.275) TCGA-EB-A431-01 16 53337877 53337877 C T CHD9 Missense_Mutation p.L1987F 0.54 benign(0.279) TCGA-EB-A431-01 16 57917979 57917979 G A CNGB1 3'UTR 0.23 TCGA-EB-A431-01 16 57917980 57917980 G A CNGB1 3'UTR 0.23 TCGA-EB-A431-01 16 624314 624314 C T PIGQ Silent p.F80F 0.40 TCGA-EB-A431-01 16 66942207 66942207 C T CDH16 3'UTR 0.50 TCGA-EB-A431-01 16 66972137 66972137 C T CES2 Missense_Mutation p.P156S 0.25 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 16 67208748 67208748 G A NOL3 Silent p.Q170Q 0.67 TCGA-EB-A431-01 16 67289062 67289062 C T SLC9A5 Missense_Mutation p.S210F 0.70 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 16 68405833 68405833 G A SMPD3 Silent p.F84F 0.75 TCGA-EB-A431-01 16 70030056 70030056 G A PDXDC2P RNA 0.25 TCGA-EB-A431-01 16 705221 705221 C T WDR90 Intron 0.59 TCGA-EB-A431-01 16 70955013 70955013 C T HYDIN Silent p.R2422R 0.24 TCGA-EB-A431-01 16 71101260 71101260 C T HYDIN Missense_Mutation p.E670K 0.19 probably_damaging(0.97) TCGA-EB-A431-01 16 71318434 71318434 A C CMTR2 Missense_Mutation p.F464V 0.26 tolerated(0.14) benign(0.146) TCGA-EB-A431-01 16 715626 715626 C T WDR90 Intron 0.26 TCGA-EB-A431-01 16 72845663 72845663 G A ZFHX3 Missense_Mutation p.P1226L 0.70 benign(0.018) TCGA-EB-A431-01 16 75269650 75269650 G A BCAR1 Missense_Mutation p.P429S 0.88 tolerated(0.3) probably_damaging(0.952) TCGA-EB-A431-01 16 75563607 75563607 G A CHST5 Missense_Mutation p.P226S 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 16 81167179 81167179 C T PKD1L2 RNA 0.12 TCGA-EB-A431-01 16 81167180 81167180 T C PKD1L2 RNA 0.12 TCGA-EB-A431-01 16 822691 822691 C T MSLNL Missense_Mutation p.E806K 0.62 benign(0.381) TCGA-EB-A431-01 16 825539 825539 C T MSLNL Missense_Mutation p.E408K 0.66 benign(0.083) TCGA-EB-A431-01 16 84215258 84215258 G A TAF1C Missense_Mutation p.P349L 0.30 tolerated(0.08) probably_damaging(0.979) TCGA-EB-A431-01 16 87451093 87451093 G A ZCCHC14 Silent p.P315P 0.32 TCGA-EB-A431-01 16 89351399 89351399 G A ANKRD11 Silent p.S517S 0.28 TCGA-EB-A431-01 16 89351400 89351400 G A ANKRD11 Missense_Mutation p.S517F 0.29 probably_damaging(0.962) TCGA-EB-A431-01 16 9858153 9858153 T G GRIN2A Missense_Mutation p.K1083T 0.25 deleterious(0.05) probably_damaging(0.984) TCGA-EB-A431-01 17 10295225 10295225 A G MYH8 Missense_Mutation p.S1880P 0.68 deleterious(0) possibly_damaging(0.529) TCGA-EB-A431-01 17 10307866 10307866 G A MYH8 Silent p.A823A 0.39 TCGA-EB-A431-01 17 10398360 10398360 C T MYH1 Missense_Mutation p.R1785Q 0.33 deleterious(0) probably_damaging(0.929) TCGA-EB-A431-01 17 10399471 10399471 C T MYH1 Splice_Site p.X1656_splice 0.59 TCGA-EB-A431-01 17 10399699 10399699 C T MYH1 Silent p.E1608E 0.60 TCGA-EB-A431-01 17 10401121 10401121 A G MYH1 Missense_Mutation p.L1432P 0.69 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 17 10419298 10419298 C T MYH1 Silent p.E150E 0.25 TCGA-EB-A431-01 17 10433037 10433037 C T MYH2 Silent p.E987E 0.28 TCGA-EB-A431-01 17 10446214 10446214 C T MYH2 Silent p.S294S 0.31 TCGA-EB-A431-01 17 10538311 10538311 G A MYH3 Missense_Mutation p.S1401F 0.65 deleterious(0) benign(0.197) TCGA-EB-A431-01 17 11725359 11725359 C T DNAH9 Missense_Mutation p.R2944W 0.50 probably_damaging(0.99) TCGA-EB-A431-01 17 12011195 12011195 C T MAP2K4 Missense_Mutation p.P201L 0.21 deleterious(0) probably_damaging(0.969) TCGA-EB-A431-01 17 12666901 12666901 C T MYOCD Silent p.F967F 0.29 TCGA-EB-A431-01 17 12896263 12896263 G A ELAC2 Missense_Mutation p.R785W 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 17 17697867 17697867 C T RAI1 Silent p.A535A 0.54 TCGA-EB-A431-01 17 17699077 17699077 C T RAI1 Nonsense_Mutation p.Q939* 0.24 TCGA-EB-A431-01 17 20363728 20363728 C T LGALS9B Missense_Mutation p.G23E 0.52 deleterious(0) probably_damaging(0.989) TCGA-EB-A431-01 17 26861448 26861448 G A FOXN1 Missense_Mutation p.G343S 0.12 tolerated(0.05) probably_damaging(0.995) TCGA-EB-A431-01 17 26943944 26943944 G A KIAA0100 Missense_Mutation p.P1995L 0.23 deleterious(0) probably_damaging(0.972) TCGA-EB-A431-01 17 27028622 27028622 C T SUPT6H Silent p.L1720L 0.19 TCGA-EB-A431-01 17 27028623 27028623 C A SUPT6H Missense_Mutation p.L1721M 0.19 tolerated(0.07) possibly_damaging(0.831) TCGA-EB-A431-01 17 30348330 30348330 C T LRRC37B Silent p.L55L 0.18 TCGA-EB-A431-01 17 30349303 30349303 T C LRRC37B Missense_Mutation p.S380P 0.23 tolerated(0.15) probably_damaging(0.958) TCGA-EB-A431-01 17 3119415 3119415 C A OR1A1 Silent p.S167S 0.74 TCGA-EB-A431-01 17 32685087 32685087 G A CCL13 Silent p.K78K 0.24 TCGA-EB-A431-01 17 33513609 33513609 C T UNC45B 3'UTR 0.31 TCGA-EB-A431-01 17 33738808 33738808 G A SLFN12 Missense_Mutation p.S429F 0.63 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 17 34106267 34106267 G A MMP28 Nonsense_Mutation p.R58* 0.44 TCGA-EB-A431-01 17 3432136 3432136 C T TRPV3 Missense_Mutation p.E466K 0.23 tolerated(0.87) benign(0.002) TCGA-EB-A431-01 17 34397833 34397833 C T CCL18 Missense_Mutation p.L32F 0.38 tolerated(1) benign(0.028) TCGA-EB-A431-01 17 35627660 35627660 G A ACACA Silent p.F367F 0.35 TCGA-EB-A431-01 17 36487415 36487415 C T GPR179 Splice_Site p.X680_splice 0.39 TCGA-EB-A431-01 17 38816459 38816459 C T KRT222 Missense_Mutation p.E76K 0.42 tolerated(0.45) benign(0.362) TCGA-EB-A431-01 17 39135169 39135169 G A KRT40 Silent p.I361I 0.39 TCGA-EB-A431-01 17 39279796 39279796 G A KRTAP4-12 Silent p.P193P 0.16 TCGA-EB-A431-01 17 39503160 39503160 T G KRT33A Missense_Mutation p.E271A 0.14 deleterious(0) probably_damaging(0.911) TCGA-EB-A431-01 17 39538563 39538563 C T KRT34 Missense_Mutation p.R21K 0.09 tolerated_low_confidence(0.12) benign(0.001) TCGA-EB-A431-01 17 39538564 39538564 T A KRT34 Nonsense_Mutation p.R21* 0.09 TCGA-EB-A431-01 17 39597163 39597163 G A KRT38 Missense_Mutation p.S4F 0.17 tolerated(0.46) benign(0.001) TCGA-EB-A431-01 17 39644581 39644581 C T KRT36 Missense_Mutation p.E205K 0.45 deleterious(0.04) possibly_damaging(0.492) TCGA-EB-A431-01 17 39661325 39661325 C T KRT13 Missense_Mutation p.E160K 0.17 deleterious(0.02) benign(0.223) TCGA-EB-A431-01 17 39670410 39670410 C T KRT15 Intron 0.17 TCGA-EB-A431-01 17 39740029 39740029 C T KRT14 Missense_Mutation p.E304K 0.37 tolerated(0.31) benign(0.021) TCGA-EB-A431-01 17 39880954 39880954 C T HAP1 Silent p.%3D 0.19 TCGA-EB-A431-01 17 39978594 39978594 G A FKBP10 Silent p.K561K 0.50 TCGA-EB-A431-01 17 40065902 40065902 G A ACLY Silent p.L133L 0.14 TCGA-EB-A431-01 17 42255665 42255665 G A ASB16 Silent p.L423L 0.28 TCGA-EB-A431-01 17 42255666 42255666 G A ASB16 Missense_Mutation p.G424R 0.29 deleterious(0.03) possibly_damaging(0.534) TCGA-EB-A431-01 17 42338027 42338027 C T SLC4A1 Missense_Mutation p.E109K 0.21 deleterious(0.02) benign(0.03) TCGA-EB-A431-01 17 42744504 42744504 G A C17orf104 Missense_Mutation p.E409K 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 17 42759409 42759409 G A CCDC43 Silent p.A130A 0.15 TCGA-EB-A431-01 17 43368078 43368078 G A MAP3K14 RNA 0.12 TCGA-EB-A431-01 17 44060805 44060805 C T MAPT Missense_Mutation p.P212L 0.26 tolerated(0.31) benign(0) TCGA-EB-A431-01 17 4461943 4461943 C T GGT6 Silent p.G283G 0.33 TCGA-EB-A431-01 17 45380161 45380161 G A ITGB3 Missense_Mutation p.E697K 0.14 tolerated(0.11) probably_damaging(0.953) TCGA-EB-A431-01 17 45916994 45916994 C T SCRN2 Silent p.R124R 0.18 TCGA-EB-A431-01 17 46054136 46054136 C G CDK5RAP3 Missense_Mutation p.S286C 0.20 deleterious(0.01) possibly_damaging(0.684) TCGA-EB-A431-01 17 46259804 46259804 G A SKAP1 Missense_Mutation p.P195S 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A431-01 17 47018295 47018295 G A SNF8 Missense_Mutation p.P79S 0.14 deleterious(0) possibly_damaging(0.822) TCGA-EB-A431-01 17 47210386 47210386 G A B4GALNT2 5'UTR 0.17 TCGA-EB-A431-01 17 47247070 47247070 C T B4GALNT2 Missense_Mutation p.H561Y 0.10 tolerated(0.12) benign(0.02) TCGA-EB-A431-01 17 47656700 47656700 G A NXPH3 3'UTR 0.27 TCGA-EB-A431-01 17 48046976 48046976 C T DLX4 Silent p.S48S 0.14 TCGA-EB-A431-01 17 48212613 48212613 G A PPP1R9B 3'UTR 0.21 TCGA-EB-A431-01 17 48212639 48212639 G A PPP1R9B 3'UTR 0.24 TCGA-EB-A431-01 17 48267915 48267915 G A COL1A1 Missense_Mutation p.R796C 0.13 unknown(0) TCGA-EB-A431-01 17 48453106 48453106 G T EME1 Missense_Mutation p.Q179H 0.22 deleterious(0.01) possibly_damaging(0.896) TCGA-EB-A431-01 17 48650203 48650203 C T CACNA1G Silent p.I345I 0.11 TCGA-EB-A431-01 17 48680522 48680522 G A CACNA1G Silent p.L1377L 0.25 TCGA-EB-A431-01 17 48741202 48741202 G A ABCC3 Missense_Mutation p.G387S 0.09 tolerated(0.21) probably_damaging(0.962) TCGA-EB-A431-01 17 48823997 48823997 C T LUC7L3 Nonsense_Mutation p.R358* 0.12 TCGA-EB-A431-01 17 49711004 49711004 G A CA10 Missense_Mutation p.S266F 0.07 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 17 4994885 4994885 C T ZFP3 Missense_Mutation p.P29L 0.25 tolerated(0.66) benign(0.022) TCGA-EB-A431-01 17 5485230 5485230 C T NLRP1 Missense_Mutation p.A201T 0.22 tolerated(0.27) benign(0.321) TCGA-EB-A431-01 17 54935974 54935974 G A DGKE Missense_Mutation p.G411E 0.44 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 17 55191864 55191864 C T AKAP1 Silent p.N716N 0.28 TCGA-EB-A431-01 17 56166735 56166735 C T DYNLL2 3'UTR 0.50 TCGA-EB-A431-01 17 56247766 56247766 C T OR4D2 Silent p.I250I 0.28 TCGA-EB-A431-01 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.13 TCGA-EB-A431-01 17 56344924 56344924 C T LPO Silent p.F636F 0.39 TCGA-EB-A431-01 17 58422887 58422887 G A USP32 Silent p.F47F 0.08 TCGA-EB-A431-01 17 58504103 58504103 C T C17orf64 Silent p.L118L 0.18 TCGA-EB-A431-01 17 58511324 58511324 C T C17orf64 3'Flank 0.23 TCGA-EB-A431-01 17 59445710 59445710 C T BCAS3 Silent p.T831T 0.12 TCGA-EB-A431-01 17 60348314 60348314 C A TBC1D3P2 Intron 0.08 TCGA-EB-A431-01 17 60493650 60493650 G A EFCAB3 Missense_Mutation p.R478K 0.30 tolerated(0.17) probably_damaging(0.98) TCGA-EB-A431-01 17 61392013 61392013 C T TANC2 Missense_Mutation p.P401L 0.13 deleterious(0.01) possibly_damaging(0.88) TCGA-EB-A431-01 17 61611576 61611576 C T KCNH6 Silent p.R335R 0.13 TCGA-EB-A431-01 17 61885166 61885166 C T DDX42 Missense_Mutation p.P310L 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 17 61949486 61949486 C T CSH2 Silent p.%3D 0.50 TCGA-EB-A431-01 17 61972598 61972598 G A CSH1 Intron 0.08 TCGA-EB-A431-01 17 61987536 61987536 G A CSHL1 Nonsense_Mutation p.Q153* 0.18 TCGA-EB-A431-01 17 61987545 61987545 C T CSHL1 Missense_Mutation p.E150K 0.23 deleterious(0.05) probably_damaging(0.985) TCGA-EB-A431-01 17 62018049 62018049 C T SCN4A 3'UTR 0.19 TCGA-EB-A431-01 17 62028952 62028952 G T SCN4A Missense_Mutation p.N895K 0.21 tolerated(0.2) benign(0.011) TCGA-EB-A431-01 17 62028953 62028953 T A SCN4A Missense_Mutation p.N895I 0.22 deleterious(0.05) possibly_damaging(0.654) TCGA-EB-A431-01 17 62050110 62050110 C T SCN4A Missense_Mutation p.R31Q 0.26 deleterious(0.01) benign(0.019) TCGA-EB-A431-01 17 62265727 62265727 G A TEX2 Missense_Mutation p.T749I 0.13 tolerated(0.18) benign(0.016) TCGA-EB-A431-01 17 62265765 62265765 A C TEX2 Silent p.P736P 0.21 TCGA-EB-A431-01 17 63221195 63221195 C T RGS9 Missense_Mutation p.P495S 0.12 tolerated_low_confidence(0.14) probably_damaging(0.941) TCGA-EB-A431-01 17 64222231 64222231 G A APOH Missense_Mutation p.P85S 0.15 tolerated(0.08) probably_damaging(0.991) TCGA-EB-A431-01 17 64873523 64873523 G A CACNG5 Missense_Mutation p.G25S 0.27 tolerated(0.31) probably_damaging(0.995) TCGA-EB-A431-01 17 65074360 65074360 A C HELZ 3'UTR 0.26 TCGA-EB-A431-01 17 66878805 66878805 C T ABCA8 Missense_Mutation p.D1215N 0.09 deleterious(0) possibly_damaging(0.45) TCGA-EB-A431-01 17 66913580 66913580 A T ABCA8 Missense_Mutation p.F647Y 0.12 deleterious(0.02) benign(0.049) TCGA-EB-A431-01 17 66920894 66920894 G A ABCA8 Missense_Mutation p.H464Y 0.15 deleterious(0.02) benign(0.018) TCGA-EB-A431-01 17 67079036 67079036 G A ABCA6 Missense_Mutation p.P1532S 0.14 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 17 67133595 67133595 G A ABCA6 Missense_Mutation p.S48F 0.09 tolerated(0.19) probably_damaging(0.973) TCGA-EB-A431-01 17 67298951 67298951 G A ABCA5 Missense_Mutation p.L343F 0.52 tolerated(0.14) probably_damaging(0.991) TCGA-EB-A431-01 17 68128918 68128918 G A KCNJ16 Silent p.R230R 0.22 TCGA-EB-A431-01 17 70943901 70943901 G A SLC39A11 Silent p.S140S 0.22 TCGA-EB-A431-01 17 7132919 7132919 G A DVL2 Silent p.P245P 0.31 TCGA-EB-A431-01 17 71415410 71415410 G A SDK2 Missense_Mutation p.P694L 0.20 deleterious(0.02) probably_damaging(0.938) TCGA-EB-A431-01 17 72436372 72436372 G A GPRC5C Missense_Mutation p.G198S 0.09 tolerated(0.2) probably_damaging(0.998) TCGA-EB-A431-01 17 72758144 72758144 C T SLC9A3R1 Intron 0.06 TCGA-EB-A431-01 17 7324716 7324716 C T SPEM1 Missense_Mutation p.P241L 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-EB-A431-01 17 7330410 7330410 C T C17orf74 Missense_Mutation p.S367F 0.25 tolerated(0.05) probably_damaging(0.919) TCGA-EB-A431-01 17 73486351 73486351 C T KIAA0195 Missense_Mutation p.P331S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 17 7369506 7369506 G A ZBTB4 Silent p.P205P 0.27 TCGA-EB-A431-01 17 73745120 73745120 G A ITGB4 Missense_Mutation p.D1104N 0.23 deleterious(0.01) benign(0.005) TCGA-EB-A431-01 17 73748625 73748625 G A ITGB4 Missense_Mutation p.G1359S 0.15 tolerated_low_confidence(0.22) benign(0.021) TCGA-EB-A431-01 17 73999323 73999323 C T CDK3 Silent p.L212L 0.44 TCGA-EB-A431-01 17 74133899 74133899 C T FOXJ1 Silent p.E267E 0.14 TCGA-EB-A431-01 17 74934147 74934147 C T MGAT5B Silent p.P511P 0.32 TCGA-EB-A431-01 17 74936623 74936623 C T MGAT5B Missense_Mutation p.S584F 0.20 tolerated(0.56) probably_damaging(0.979) TCGA-EB-A431-01 17 75316401 75316401 C T SEPT9 Intron 0.12 TCGA-EB-A431-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.68 TCGA-EB-A431-01 17 7605836 7605836 C T WRAP53 Missense_Mutation p.P377L 0.61 deleterious(0.03) probably_damaging(0.981) TCGA-EB-A431-01 17 7611794 7611794 G A EFNB3 Missense_Mutation p.G153R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 17 76399825 76399825 C T PGS1 Missense_Mutation p.P353S 0.31 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 17 76490720 76490720 G A DNAH17 Silent p.F2061F 0.19 TCGA-EB-A431-01 17 76499039 76499039 C T DNAH17 Missense_Mutation p.E1667K 0.17 benign(0.034) TCGA-EB-A431-01 17 76799723 76799723 G A USP36 Missense_Mutation p.P852S 0.16 tolerated_low_confidence(1) benign(0.108) TCGA-EB-A431-01 17 76818060 76818060 G A USP36 Missense_Mutation p.T239I 0.30 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 17 76851924 76851924 G A TIMP2 Missense_Mutation p.P163L 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-EB-A431-01 17 77073515 77073515 C T ENGASE Silent p.I50I 0.15 TCGA-EB-A431-01 17 7755877 7755877 C T KDM6B Silent p.I1511I 0.35 TCGA-EB-A431-01 17 78082361 78082361 C T GAA Silent p.I383I 0.38 TCGA-EB-A431-01 17 78110071 78110071 G A EIF4A3 Silent p.I349I 0.12 TCGA-EB-A431-01 17 78936356 78936356 C T RPTOR Missense_Mutation p.P1263L 0.33 tolerated(0.12) possibly_damaging(0.859) TCGA-EB-A431-01 17 78936357 78936357 C T RPTOR Silent p.P1263P 0.33 TCGA-EB-A431-01 17 79173560 79173560 G A AZI1 Missense_Mutation p.R328W 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 17 79173561 79173561 G A AZI1 Silent p.A327A 0.49 TCGA-EB-A431-01 17 79803104 79803104 G A P4HB Silent p.V454V 0.10 TCGA-EB-A431-01 17 80923545 80923545 G A B3GNTL1 Silent p.P194P 0.45 TCGA-EB-A431-01 17 80992912 80992912 G A B3GNTL1 Missense_Mutation p.S114L 0.14 tolerated(0.06) benign(0.192) TCGA-EB-A431-01 17 9490067 9490067 C T WDR16 Missense_Mutation p.S108F 0.46 deleterious(0.02) possibly_damaging(0.654) TCGA-EB-A431-01 17 9490068 9490068 C T WDR16 Silent p.S108S 0.43 TCGA-EB-A431-01 17 9729409 9729409 C T GLP2R Missense_Mutation p.P10L 0.87 deleterious_low_confidence(0) unknown(0) TCGA-EB-A431-01 17 9791260 9791260 G A GLP2R Silent p.V432V 0.28 TCGA-EB-A431-01 18 19780747 19780747 C T GATA6 Silent p.S583S 0.19 TCGA-EB-A431-01 18 19997356 19997356 G A CTAGE1 Missense_Mutation p.S140F 0.28 deleterious(0) possibly_damaging(0.813) TCGA-EB-A431-01 18 21209916 21209916 C T ANKRD29 Splice_Site p.X144_splice 0.50 TCGA-EB-A431-01 18 21427614 21427614 G A LAMA3 Missense_Mutation p.R1373Q 0.40 benign(0.054) TCGA-EB-A431-01 18 21437856 21437856 G A LAMA3 Silent p.G1395G 0.61 TCGA-EB-A431-01 18 28654776 28654776 G A DSC2 Silent p.P587P 0.64 TCGA-EB-A431-01 18 28711522 28711522 C T DSC1 Intron 0.42 TCGA-EB-A431-01 18 28723658 28723658 C T DSC1 Missense_Mutation p.D346N 0.28 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 18 28919773 28919773 G A DSG1 Missense_Mutation p.R491K 0.65 tolerated(0.85) benign(0.001) TCGA-EB-A431-01 18 28992948 28992948 C T DSG4 Missense_Mutation p.P857L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 18 29039917 29039917 C T DSG3 Silent p.F209F 0.73 TCGA-EB-A431-01 18 30950052 30950052 G A CCDC178 Nonsense_Mutation p.Q104* 0.23 TCGA-EB-A431-01 18 44013205 44013205 C T RNF165 Silent p.F38F 0.33 TCGA-EB-A431-01 18 44030317 44030317 G A RNF165 Missense_Mutation p.G225E 0.66 deleterious(0) possibly_damaging(0.743) TCGA-EB-A431-01 18 44260436 44260436 G A ST8SIA5 Missense_Mutation p.R234C 0.35 possibly_damaging(0.579) TCGA-EB-A431-01 18 48331554 48331554 G A MRO Silent p.I147I 0.61 TCGA-EB-A431-01 18 59158012 59158012 G A CDH20 Missense_Mutation p.D76N 0.64 deleterious(0.05) possibly_damaging(0.513) TCGA-EB-A431-01 18 61323052 61323052 C T SERPINB3 Missense_Mutation p.E338K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 18 63527019 63527019 G A CDH7 Missense_Mutation p.D524N 0.68 deleterious(0.01) benign(0.054) TCGA-EB-A431-01 18 66678234 66678234 G A CCDC102B Missense_Mutation p.E443K 0.50 deleterious(0.04) benign(0.103) TCGA-EB-A431-01 18 6978295 6978295 C T LAMA1 Silent p.A2030A 0.62 TCGA-EB-A431-01 18 70450954 70450954 C T NETO1 Missense_Mutation p.R276Q 0.54 tolerated(0.15) probably_damaging(0.946) TCGA-EB-A431-01 18 74154336 74154336 G A ZNF516 Silent p.T225T 0.28 TCGA-EB-A431-01 18 77894282 77894282 C T ADNP2 Missense_Mutation p.S329F 0.35 deleterious(0.01) possibly_damaging(0.898) TCGA-EB-A431-01 18 8784255 8784255 C T SOGA2 Missense_Mutation p.P382L 0.31 tolerated(0.08) probably_damaging(0.972) TCGA-EB-A431-01 19 10071469 10071469 G A COL5A3 Missense_Mutation p.S1650F 0.34 unknown(0) TCGA-EB-A431-01 19 10091776 10091776 C T COL5A3 Silent p.E831E 0.27 TCGA-EB-A431-01 19 1057385 1057385 C T ABCA7 Missense_Mutation p.P1613S 0.27 tolerated(0.43) benign(0.284) TCGA-EB-A431-01 19 10794364 10794364 C T ILF3 Missense_Mutation p.P639L 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A431-01 19 11233876 11233876 G A LDLR Missense_Mutation p.E723K 0.28 tolerated(0.9) benign(0.002) TCGA-EB-A431-01 19 11558261 11558261 C T PRKCSH Missense_Mutation p.P286L 0.17 deleterious(0.04) possibly_damaging(0.856) TCGA-EB-A431-01 19 11565405 11565405 C T ELAVL3 Missense_Mutation p.G347D 0.29 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 19 11565406 11565406 C T ELAVL3 Missense_Mutation p.G347S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 19 11942540 11942540 C T ZNF440 Silent p.S183S 0.29 TCGA-EB-A431-01 19 12188248 12188248 C T ZNF844 3'UTR 0.50 TCGA-EB-A431-01 19 13084298 13084298 C T DAND5 Silent p.T140T 0.34 TCGA-EB-A431-01 19 13246057 13246057 C T NACC1 Silent p.F12F 0.29 TCGA-EB-A431-01 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.24 TCGA-EB-A431-01 19 14562765 14562765 C T PKN1 Silent p.A371A 0.23 TCGA-EB-A431-01 19 14562766 14562766 C T PKN1 Missense_Mutation p.R372W 0.23 deleterious(0) possibly_damaging(0.894) TCGA-EB-A431-01 19 14674799 14674799 C T TECR Silent p.F91F 0.32 TCGA-EB-A431-01 19 15053156 15053156 C T OR7C2 Missense_Mutation p.P286S 0.33 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EB-A431-01 19 15073051 15073051 C T SLC1A6 Missense_Mutation p.G233E 0.31 tolerated(0.7) benign(0.025) TCGA-EB-A431-01 19 15073052 15073052 C T SLC1A6 Missense_Mutation p.G233R 0.32 tolerated(0.3) possibly_damaging(0.562) TCGA-EB-A431-01 19 15586733 15586733 C T PGLYRP2 Missense_Mutation p.D250N 0.36 tolerated(0.07) possibly_damaging(0.452) TCGA-EB-A431-01 19 15728902 15728902 C T AD000091.2 5'Flank 0.32 TCGA-EB-A431-01 19 16025132 16025132 G A CYP4F11 Silent p.P460P 0.26 TCGA-EB-A431-01 19 16025675 16025675 G A CYP4F11 Silent p.T382T 0.27 TCGA-EB-A431-01 19 16243106 16243106 C T RAB8A Missense_Mutation p.L206F 0.27 deleterious_low_confidence(0.03) benign(0.078) TCGA-EB-A431-01 19 17088270 17088270 G A CPAMD8 Missense_Mutation p.L603F 0.38 tolerated(0.11) benign(0.063) TCGA-EB-A431-01 19 17306100 17306100 C T MYO9B Silent p.P1288P 0.19 TCGA-EB-A431-01 19 17394684 17394684 C T ANKLE1 Nonsense_Mutation p.R371* 0.38 TCGA-EB-A431-01 19 19545912 19545912 C T GATAD2A Intron 0.32 TCGA-EB-A431-01 19 1978999 1978999 G A CSNK1G2 Missense_Mutation p.D197N 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 19 2097455 2097455 C T IZUMO4 Missense_Mutation p.R111W 0.24 tolerated(0.11) probably_damaging(0.988) TCGA-EB-A431-01 19 21990741 21990741 G A ZNF43 Missense_Mutation p.H700Y 0.25 deleterious(0.03) benign(0.446) TCGA-EB-A431-01 19 24310058 24310058 C T ZNF254 Missense_Mutation p.S419L 0.38 deleterious(0.02) benign(0.105) TCGA-EB-A431-01 19 3002450 3002450 C A TLE2 Nonsense_Mutation p.E650* 0.36 TCGA-EB-A431-01 19 30935963 30935963 G A ZNF536 Silent p.L498L 0.36 TCGA-EB-A431-01 19 31039670 31039670 G A ZNF536 Silent p.A1048A 0.16 TCGA-EB-A431-01 19 31039975 31039975 C T ZNF536 Missense_Mutation p.P1150L 0.27 deleterious_low_confidence(0.01) benign(0.118) TCGA-EB-A431-01 19 3293438 3293438 C T CELF5 Silent p.P484P 0.42 TCGA-EB-A431-01 19 34263618 34263618 C T CHST8 Missense_Mutation p.P309S 0.24 tolerated(0.07) benign(0.009) TCGA-EB-A431-01 19 35863100 35863100 C T GPR42 Missense_Mutation p.S280F 0.59 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 19 36430377 36430377 C T LRFN3 Missense_Mutation p.S17L 0.16 tolerated(0.14) unknown(0) TCGA-EB-A431-01 19 37006034 37006034 A T ZNF260 Missense_Mutation p.F36Y 0.21 deleterious(0.02) benign(0.032) TCGA-EB-A431-01 19 37117868 37117868 T A ZNF382 Missense_Mutation p.C357S 0.37 deleterious(0) probably_damaging(0.984) TCGA-EB-A431-01 19 37647194 37647194 G A CTC-454I21.3 Missense_Mutation p.P34S 0.31 tolerated(0.11) possibly_damaging(0.633) TCGA-EB-A431-01 19 38851140 38851140 C T CATSPERG Silent p.L540L 0.44 TCGA-EB-A431-01 19 38876690 38876690 C T GGN Silent p.R404R 0.50 TCGA-EB-A431-01 19 38911562 38911562 G A RASGRP4 Silent p.I121I 0.37 TCGA-EB-A431-01 19 38993177 38993177 G A RYR1 Missense_Mutation p.A2549T 0.25 benign(0.066) TCGA-EB-A431-01 19 39384160 39384160 G A SIRT2 Silent p.F40F 0.44 TCGA-EB-A431-01 19 39760141 39760141 C T IFNL2 Missense_Mutation p.P95L 0.47 tolerated(0.07) benign(0.355) TCGA-EB-A431-01 19 39868415 39868415 C T SAMD4B Silent p.P465P 0.24 TCGA-EB-A431-01 19 40978546 40978546 G A SPTBN4 Silent p.G6G 0.33 TCGA-EB-A431-01 19 41271057 41271057 C T SNRPA Silent p.S278S 0.17 TCGA-EB-A431-01 19 4157161 4157161 C T CREB3L3 Missense_Mutation p.S109F 0.32 deleterious(0.03) benign(0.31) TCGA-EB-A431-01 19 4157162 4157162 C T CREB3L3 Silent p.S109S 0.30 TCGA-EB-A431-01 19 4157164 4157164 C T CREB3L3 Missense_Mutation p.P110L 0.30 tolerated(0.09) benign(0.006) TCGA-EB-A431-01 19 41798325 41798325 C T HNRNPUL1 Missense_Mutation p.S392F 0.31 deleterious(0) unknown(0) TCGA-EB-A431-01 19 42190975 42190975 C T CEACAM7 Missense_Mutation p.G81E 0.38 deleterious(0.02) probably_damaging(0.965) TCGA-EB-A431-01 19 42219167 42219167 C T CEACAM5 Silent p.L234L 0.30 TCGA-EB-A431-01 19 42399518 42399518 C T ARHGEF1 Missense_Mutation p.S340F 0.30 deleterious(0.02) possibly_damaging(0.898) TCGA-EB-A431-01 19 42794675 42794675 C T CIC Silent p.S585S 0.31 TCGA-EB-A431-01 19 43097936 43097936 C T CEACAM8 Missense_Mutation p.D61N 0.33 tolerated(1) benign(0.006) TCGA-EB-A431-01 19 43358117 43358117 G A PSG10P RNA 0.31 TCGA-EB-A431-01 19 43371250 43371250 C T PSG1 3'Flank 0.20 TCGA-EB-A431-01 19 43382152 43382152 C T PSG1 Missense_Mutation p.E115K 0.31 tolerated(0.74) benign(0.007) TCGA-EB-A431-01 19 43579626 43579626 C T PSG2 Missense_Mutation p.E197K 0.31 tolerated(0.93) benign(0.002) TCGA-EB-A431-01 19 43965657 43965657 A C LYPD3 Missense_Mutation p.L296W 0.31 deleterious_low_confidence(0.03) benign(0.015) TCGA-EB-A431-01 19 45165150 45165150 C T PVR 3'UTR 0.27 TCGA-EB-A431-01 19 45322338 45322338 A T BCAM Missense_Mutation p.E454D 0.28 tolerated(0.16) benign(0.01) TCGA-EB-A431-01 19 45856518 45856518 G A ERCC2 Silent p.A580A 0.35 TCGA-EB-A431-01 19 46124480 46124480 G A EML2 Silent p.F570F 0.38 TCGA-EB-A431-01 19 46195242 46195242 C T SNRPD2 5'UTR 0.26 TCGA-EB-A431-01 19 47226080 47226080 G A STRN4 Silent p.S638S 0.28 TCGA-EB-A431-01 19 48715041 48715041 G A CARD8 Silent p.L514L 0.25 TCGA-EB-A431-01 19 48715042 48715042 G A CARD8 Silent p.A513A 0.25 TCGA-EB-A431-01 19 49005706 49005706 G A LMTK3 Missense_Mutation p.H289Y 0.26 benign(0.316) TCGA-EB-A431-01 19 49183487 49183487 G A RN7SL345P 5'Flank 0.25 TCGA-EB-A431-01 19 49376623 49376623 T C PPP1R15A Missense_Mutation p.W45R 0.26 deleterious(0) probably_damaging(0.969) TCGA-EB-A431-01 19 49425739 49425739 G A NUCB1 3'UTR 0.17 TCGA-EB-A431-01 19 50169132 50169132 C T BCL2L12 Missense_Mutation p.R18W 0.35 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A431-01 19 50905565 50905565 C T POLD1 Silent p.I231I 0.35 TCGA-EB-A431-01 19 50946841 50946841 G A MYBPC2 Silent p.K331K 0.47 TCGA-EB-A431-01 19 51017866 51017866 G A ASPDH 5'Flank 0.22 TCGA-EB-A431-01 19 51293669 51293669 G A ACPT 5'Flank 0.36 TCGA-EB-A431-01 19 5135530 5135530 C T KDM4B Missense_Mutation p.P756S 0.43 benign(0.201) TCGA-EB-A431-01 19 51628527 51628527 C T SIGLEC9 Missense_Mutation p.T99I 0.34 tolerated(0.05) benign(0.131) TCGA-EB-A431-01 19 51728499 51728499 C T CD33 Silent p.F21F 0.21 TCGA-EB-A431-01 19 51919293 51919293 G T SIGLEC10 Missense_Mutation p.L295I 0.33 deleterious(0) probably_damaging(0.973) TCGA-EB-A431-01 19 52129284 52129284 C T SIGLEC5 Splice_Site p.X488_splice 0.42 TCGA-EB-A431-01 19 52129285 52129285 C T SIGLEC5 Silent p.S488S 0.42 TCGA-EB-A431-01 19 52146913 52146913 G A SIGLEC14 Missense_Mutation p.S342F 0.71 tolerated(0.71) benign(0.078) TCGA-EB-A431-01 19 5215312 5215312 G A PTPRS Nonsense_Mutation p.Q1436* 0.31 TCGA-EB-A431-01 19 52955063 52955063 G A ZNF578 5'Flank 0.11 TCGA-EB-A431-01 19 53057054 53057054 C T ZNF808 Silent p.S295S 0.24 TCGA-EB-A431-01 19 53058510 53058510 C T ZNF808 Missense_Mutation p.H781Y 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A431-01 19 53303922 53303922 G A ZNF28 Silent p.F392F 0.26 TCGA-EB-A431-01 19 53619674 53619674 C T ZNF415 Missense_Mutation p.D10N 0.33 deleterious(0) possibly_damaging(0.908) TCGA-EB-A431-01 19 53854211 53854211 C T ZNF845 Missense_Mutation p.H95Y 0.33 tolerated(0.55) possibly_damaging(0.541) TCGA-EB-A431-01 19 54203316 54203316 G T MIR518F RNA 0.16 TCGA-EB-A431-01 19 54466587 54466587 G A CACNG8 Missense_Mutation p.G64E 0.27 tolerated(0.84) benign(0.004) TCGA-EB-A431-01 19 54545183 54545183 C T VSTM1 Silent p.E180E 0.36 TCGA-EB-A431-01 19 54697191 54697191 T A TSEN34 Missense_Mutation p.S303T 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 19 55175917 55175917 C T LILRB4 Silent p.P212P 0.38 TCGA-EB-A431-01 19 55331329 55331329 G C KIR3DL1 Missense_Mutation p.D173H 0.27 tolerated(0.24) benign(0.055) TCGA-EB-A431-01 19 55331446 55331446 C T KIR3DL1 Missense_Mutation p.P212S 0.19 deleterious(0.05) benign(0.069) TCGA-EB-A431-01 19 55386809 55386809 C T FCAR Nonsense_Mutation p.Q20* 0.32 TCGA-EB-A431-01 19 55399494 55399494 A T FCAR Missense_Mutation p.E161V 0.32 deleterious(0) probably_damaging(0.977) TCGA-EB-A431-01 19 55399626 55399626 C T FCAR Missense_Mutation p.S205F 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 19 55707973 55707973 C T PTPRH Missense_Mutation p.R725Q 0.31 benign(0.001) TCGA-EB-A431-01 19 56047462 56047462 G A SBK2 Missense_Mutation p.P67L 0.31 deleterious(0.04) benign(0.136) TCGA-EB-A431-01 19 56423566 56423566 G A NLRP13 Silent p.F539F 0.32 TCGA-EB-A431-01 19 56952682 56952682 C T ZNF667 Missense_Mutation p.G561E 0.19 deleterious(0.04) probably_damaging(1) TCGA-EB-A431-01 19 57335922 57335922 G A PEG3 Silent p.I34I 0.37 TCGA-EB-A431-01 19 5749173 5749173 C T CATSPERD Silent p.I322I 0.36 TCGA-EB-A431-01 19 57647019 57647019 C T ZIM3 Missense_Mutation p.G229E 0.26 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 19 57649949 57649949 C T ZIM3 Silent p.E11E 0.41 TCGA-EB-A431-01 19 57666693 57666693 C T DUXA Silent p.R162R 0.27 TCGA-EB-A431-01 19 57744905 57744905 C T AURKC Silent p.N171N 0.18 TCGA-EB-A431-01 19 57876316 57876316 C T TRAPPC2P1 Nonsense_Mutation p.Q39* 0.29 TCGA-EB-A431-01 19 58018845 58018845 C T ZNF773 3'UTR 0.50 TCGA-EB-A431-01 19 58419881 58419881 G A ZNF417 3'UTR 0.25 TCGA-EB-A431-01 19 5844642 5844642 C T FUT3 Nonsense_Mutation p.W70* 0.39 TCGA-EB-A431-01 19 58499640 58499640 G A ZNF606 Missense_Mutation p.S112F 0.21 deleterious(0.02) benign(0.061) TCGA-EB-A431-01 19 58551877 58551877 G A ZSCAN1 Missense_Mutation p.G144R 0.34 tolerated(0.9) benign(0.002) TCGA-EB-A431-01 19 5867109 5867109 C T FUT5 Missense_Mutation p.V210M 0.29 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 19 58945019 58945019 G A ZNF132 Missense_Mutation p.P598S 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 19 59073705 59073705 G A MZF1 Missense_Mutation p.H647Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-EB-A431-01 19 59073706 59073706 G A MZF1 Silent p.I646I 0.38 TCGA-EB-A431-01 19 6001834 6001834 G A RFX2 Silent p.S617S 0.30 TCGA-EB-A431-01 19 619591 619591 G A POLRMT Missense_Mutation p.P1021S 0.30 deleterious(0.04) probably_damaging(0.951) TCGA-EB-A431-01 19 6733920 6733920 G A GPR108 Missense_Mutation p.P185L 0.47 tolerated(0.36) benign(0.001) TCGA-EB-A431-01 19 6904145 6904145 C T EMR1 Missense_Mutation p.H301Y 0.22 tolerated(0.45) benign(0.148) TCGA-EB-A431-01 19 757699 757699 G A MISP Silent p.V251V 0.23 TCGA-EB-A431-01 19 7619109 7619109 C T PNPLA6 Missense_Mutation p.L816F 0.28 deleterious(0) possibly_damaging(0.605) TCGA-EB-A431-01 19 7676661 7676661 C T CAMSAP3 Missense_Mutation p.R455C 0.56 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 19 7830542 7830542 C T CLEC4M Missense_Mutation p.S78F 0.45 tolerated(0.09) probably_damaging(0.992) TCGA-EB-A431-01 19 8137961 8137961 G A FBN3 Silent p.F2641F 0.24 TCGA-EB-A431-01 19 8319380 8319380 C T CERS4 Intron 0.49 TCGA-EB-A431-01 19 8436168 8436168 G A ANGPTL4 Silent p.G267G 0.26 TCGA-EB-A431-01 19 8660973 8660973 T A ADAMTS10 Missense_Mutation p.I441F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 19 8953661 8953661 G A MBD3L1 Missense_Mutation p.G103R 0.28 tolerated(0.48) benign(0.079) TCGA-EB-A431-01 19 9019313 9019313 C T MUC16 Missense_Mutation p.G12525E 0.21 possibly_damaging(0.679) TCGA-EB-A431-01 19 9024180 9024180 C T MUC16 Silent p.V12364V 0.30 TCGA-EB-A431-01 19 9058777 9058777 C T MUC16 Missense_Mutation p.D9557N 0.26 unknown(0) TCGA-EB-A431-01 19 9064799 9064799 G A MUC16 Silent p.T7549T 0.28 TCGA-EB-A431-01 19 9066182 9066182 G A MUC16 Silent p.P7088P 0.39 TCGA-EB-A431-01 19 9067633 9067633 C T MUC16 Missense_Mutation p.E6605K 0.30 unknown(0) TCGA-EB-A431-01 19 9070319 9070319 G A MUC16 Silent p.A5709A 0.29 TCGA-EB-A431-01 19 9071657 9071657 T A MUC16 Missense_Mutation p.K5263N 0.22 unknown(0) TCGA-EB-A431-01 19 9074385 9074385 G A MUC16 Missense_Mutation p.S4354L 0.23 unknown(0) TCGA-EB-A431-01 19 9082654 9082654 G A MUC16 Missense_Mutation p.S3054L 0.19 unknown(0) TCGA-EB-A431-01 19 9083224 9083224 G A MUC16 Missense_Mutation p.S2864F 0.25 unknown(0) TCGA-EB-A431-01 19 9089417 9089417 C T MUC16 Missense_Mutation p.E800K 0.26 unknown(0) TCGA-EB-A431-01 19 9089977 9089977 C T MUC16 Missense_Mutation p.G613E 0.33 unknown(0) TCGA-EB-A431-01 19 9213689 9213689 C T OR7G2 Silent p.T98T 0.34 TCGA-EB-A431-01 19 9361812 9361812 C T OR7E24 Silent p.L31L 0.24 TCGA-EB-A431-01 19 9406944 9406944 G A ZNF699 Missense_Mutation p.T379I 0.34 tolerated(0.1) possibly_damaging(0.45) TCGA-EB-A431-01 19 9764272 9764272 C T ZNF562 Missense_Mutation p.G212S 0.24 tolerated(0.49) benign(0.254) TCGA-EB-A431-01 19 990243 990243 C T WDR18 Missense_Mutation p.S159F 0.42 deleterious(0.01) possibly_damaging(0.738) TCGA-EB-A431-01 1 101190185 101190185 C A VCAM1 Missense_Mutation p.P223T 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 1 101190335 101190335 A T VCAM1 Missense_Mutation p.N273Y 0.35 tolerated(0.07) probably_damaging(1) TCGA-EB-A431-01 1 103348803 103348803 G A COL11A1 Silent p.F1641F 0.24 TCGA-EB-A431-01 1 107691340 107691340 G A NTNG1 Missense_Mutation p.G42E 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-EB-A431-01 1 109325077 109325077 C T STXBP3 Silent p.I281I 0.23 TCGA-EB-A431-01 1 11008568 11008568 C T C1orf127 Missense_Mutation p.E542K 0.38 deleterious(0.01) possibly_damaging(0.627) TCGA-EB-A431-01 1 11009823 11009823 G A C1orf127 Missense_Mutation p.P383L 0.50 tolerated(0.32) benign(0.004) TCGA-EB-A431-01 1 110155604 110155604 C T GNAT2 5'UTR 0.34 TCGA-EB-A431-01 1 110301182 110301182 G A EPS8L3 Missense_Mutation p.P190S 0.20 tolerated(0.33) benign(0.048) TCGA-EB-A431-01 1 110302413 110302413 C T EPS8L3 Missense_Mutation p.E48K 0.11 tolerated(1) benign(0) TCGA-EB-A431-01 1 111061056 111061056 C T KCNA10 Silent p.R118R 0.20 TCGA-EB-A431-01 1 11115918 11115918 G A SRM Missense_Mutation p.P229S 0.25 tolerated(0.05) possibly_damaging(0.533) TCGA-EB-A431-01 1 11137451 11137451 G A EXOSC10 Missense_Mutation p.P617L 0.10 tolerated(0.2) benign(0.001) TCGA-EB-A431-01 1 112234012 112234012 T G RAP1A Silent p.G10G 0.12 TCGA-EB-A431-01 1 112524464 112524464 G A KCND3 Silent p.F295F 0.24 TCGA-EB-A431-01 1 11298537 11298537 G A MTOR Missense_Mutation p.H642Y 0.17 tolerated(0.46) benign(0.193) TCGA-EB-A431-01 1 113635860 113635860 C T LRIG2 Missense_Mutation p.P113L 0.29 deleterious(0.02) possibly_damaging(0.74) TCGA-EB-A431-01 1 114193659 114193659 C T MAGI3 Silent p.P757P 0.18 TCGA-EB-A431-01 1 114442487 114442487 G A AP4B1 Intron 0.31 TCGA-EB-A431-01 1 114442488 114442488 G A AP4B1 Intron 0.31 TCGA-EB-A431-01 1 114504973 114504973 C T HIPK1 Silent p.F672F 0.22 TCGA-EB-A431-01 1 114523943 114523943 C T OLFML3 Missense_Mutation p.P258L 0.47 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 1 115118354 115118354 G T BCAS2 Silent p.P92P 0.31 TCGA-EB-A431-01 1 115398181 115398181 C T SYCP1 Silent p.S32S 0.23 TCGA-EB-A431-01 1 117297090 117297090 T C CD2 5'UTR 0.20 TCGA-EB-A431-01 1 117311293 117311293 C T CD2 Missense_Mutation p.P315L 0.18 deleterious(0.01) benign(0.163) TCGA-EB-A431-01 1 117634561 117634561 T G TTF2 Missense_Mutation p.L932V 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 1177978 1177978 G A FAM132A Missense_Mutation p.L287F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 1 118623790 118623790 G A SPAG17 Missense_Mutation p.P715S 0.50 tolerated(0.49) benign(0.007) TCGA-EB-A431-01 1 120266046 120266046 T C PHGDH Missense_Mutation p.M113T 0.23 deleterious(0) probably_damaging(0.99) TCGA-EB-A431-01 1 12342936 12342936 T G VPS13D Missense_Mutation p.L1593V 0.23 possibly_damaging(0.709) TCGA-EB-A431-01 1 12378153 12378153 T A VPS13D Missense_Mutation p.F2391L 0.26 possibly_damaging(0.702) TCGA-EB-A431-01 1 12836141 12836141 T A PRAMEF12 Missense_Mutation p.L248Q 0.16 tolerated(0.44) benign(0.001) TCGA-EB-A431-01 1 12908149 12908149 G A HNRNPCL1 5'UTR 0.10 TCGA-EB-A431-01 1 12919635 12919635 C T PRAMEF2 Silent p.F125F 0.23 TCGA-EB-A431-01 1 12941959 12941959 G A PRAMEF4 Silent p.I197I 0.09 TCGA-EB-A431-01 1 13669068 13669068 G A PRAMEF14 Missense_Mutation p.S421F 0.31 deleterious(0.02) possibly_damaging(0.476) TCGA-EB-A431-01 1 13695728 13695728 G A PRAMEF19 Missense_Mutation p.P413S 0.31 probably_damaging(0.999) TCGA-EB-A431-01 1 13695740 13695740 G A PRAMEF19 Silent p.L409L 0.14 TCGA-EB-A431-01 1 1394582 1394582 C T ATAD3C Silent p.F261F 0.12 TCGA-EB-A431-01 1 145290446 145290446 C T NOTCH2NL 3'Flank 0.04 TCGA-EB-A431-01 1 145415566 145415566 C T HFE2 Missense_Mutation p.P129S 0.50 tolerated(0.26) benign(0.425) TCGA-EB-A431-01 1 145598600 145598600 G T POLR3C Missense_Mutation p.P298H 0.19 tolerated(0.05) probably_damaging(0.948) TCGA-EB-A431-01 1 146420120 146420120 C T NBPF12 Missense_Mutation p.S958L 0.27 benign(0.006) TCGA-EB-A431-01 1 149908170 149908170 C T MTMR11 Intron 0.76 TCGA-EB-A431-01 1 149908171 149908171 C T MTMR11 Intron 0.75 TCGA-EB-A431-01 1 150065677 150065677 C T VPS45 Missense_Mutation p.H476Y 0.16 deleterious(0.01) benign(0.018) TCGA-EB-A431-01 1 151110230 151110230 A C SEMA6C Missense_Mutation p.F238C 0.49 deleterious(0) probably_damaging(0.945) TCGA-EB-A431-01 1 151205082 151205082 C T PIP5K1A Missense_Mutation p.S181F 0.10 deleterious(0) probably_damaging(0.961) TCGA-EB-A431-01 1 151336878 151336878 G A SELENBP1 3'UTR 0.43 TCGA-EB-A431-01 1 151499454 151499454 C T CGN Silent p.L589L 0.38 TCGA-EB-A431-01 1 151785433 151785433 G A RORC Silent p.L425L 0.43 TCGA-EB-A431-01 1 152057925 152057925 C T TCHHL1 Missense_Mutation p.E745K 0.23 tolerated(0.22) benign(0.031) TCGA-EB-A431-01 1 152127776 152127776 C T RPTN Missense_Mutation p.G600E 0.23 tolerated(0.2) benign(0.109) TCGA-EB-A431-01 1 152128490 152128490 C T RPTN Missense_Mutation p.G362D 0.42 tolerated(0.13) benign(0.188) TCGA-EB-A431-01 1 152283244 152283244 A G FLG Missense_Mutation p.I1373T 0.36 benign(0.415) TCGA-EB-A431-01 1 152487938 152487938 C T CRCT1 Missense_Mutation p.P27S 0.36 unknown(0) TCGA-EB-A431-01 1 152573540 152573540 C T LCE3C 3'UTR 0.33 TCGA-EB-A431-01 1 152595450 152595450 C T LCE3A Missense_Mutation p.E44K 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A431-01 1 152800119 152800119 G A LCE1A Silent p.G57G 0.23 TCGA-EB-A431-01 1 152883933 152883933 G A IVL Missense_Mutation p.D554N 0.50 deleterious_low_confidence(0.02) unknown(0) TCGA-EB-A431-01 1 153270342 153270342 G A PGLYRP3 3'UTR 0.21 TCGA-EB-A431-01 1 153270343 153270343 G A PGLYRP3 3'UTR 0.20 TCGA-EB-A431-01 1 153347001 153347001 C T S100A12 Missense_Mutation p.G23E 0.20 deleterious(0.03) probably_damaging(0.919) TCGA-EB-A431-01 1 153362702 153362702 G A S100A8 Silent p.V53V 0.22 TCGA-EB-A431-01 1 154841609 154841609 C T KCNN3 Missense_Mutation p.E278K 0.27 deleterious(0.03) probably_damaging(0.987) TCGA-EB-A431-01 1 156011741 156011741 G A UBQLN4 Missense_Mutation p.P463L 0.40 deleterious(0) probably_damaging(0.992) TCGA-EB-A431-01 1 156347944 156347944 G A RHBG Intron 0.13 TCGA-EB-A431-01 1 156376745 156376745 C T C1orf61 Intron 0.19 TCGA-EB-A431-01 1 156642832 156642832 G A NES Missense_Mutation p.P383L 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 156823912 156823912 C T INSRR Missense_Mutation p.G90E 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 157494248 157494248 G A FCRL5 Missense_Mutation p.S687F 0.47 deleterious(0) possibly_damaging(0.528) TCGA-EB-A431-01 1 157514170 157514170 G A FCRL5 Silent p.S242S 0.25 TCGA-EB-A431-01 1 158323802 158323802 C T CD1E Silent p.F8F 0.43 TCGA-EB-A431-01 1 158390148 158390148 G A OR10K2 Missense_Mutation p.S170F 0.11 tolerated(0.05) possibly_damaging(0.79) TCGA-EB-A431-01 1 158517435 158517435 C T OR6Y1 Nonsense_Mutation p.W154* 0.10 TCGA-EB-A431-01 1 158585182 158585182 C T SPTA1 Silent p.K2204K 0.24 TCGA-EB-A431-01 1 158669854 158669854 T G OR6K2 Missense_Mutation p.I197L 0.17 tolerated(0.17) benign(0.261) TCGA-EB-A431-01 1 158725577 158725577 G A OR6K6 Missense_Mutation p.M324I 0.15 tolerated(0.71) benign(0.008) TCGA-EB-A431-01 1 158747291 158747291 G C OR6N2 Missense_Mutation p.I45M 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-EB-A431-01 1 158815793 158815793 G A MNDA Silent p.K329K 0.36 TCGA-EB-A431-01 1 159163685 159163685 T A CADM3 Missense_Mutation p.D216E 0.38 tolerated(0.25) benign(0.321) TCGA-EB-A431-01 1 159505103 159505103 C T OR10J5 Missense_Mutation p.G232D 0.26 deleterious(0) probably_damaging(0.987) TCGA-EB-A431-01 1 159505164 159505164 G A OR10J5 Silent p.L212L 0.17 TCGA-EB-A431-01 1 159888561 159888561 G A TAGLN2 3'UTR 0.17 TCGA-EB-A431-01 1 159888595 159888595 G A TAGLN2 Missense_Mutation p.L199F 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-EB-A431-01 1 160011960 160011960 G A KCNJ10 Silent p.F121F 0.38 TCGA-EB-A431-01 1 160151741 160151741 G A ATP1A4 Silent p.G963G 0.32 TCGA-EB-A431-01 1 160313082 160313082 C T NCSTN 5'UTR 0.12 TCGA-EB-A431-01 1 16060300 16060300 C T PLEKHM2 Silent p.L977L 0.14 TCGA-EB-A431-01 1 161010648 161010648 G A USF1 Missense_Mutation p.P192L 0.44 deleterious(0.01) benign(0.098) TCGA-EB-A431-01 1 161049388 161049388 C T PVRL4 Missense_Mutation p.R144Q 0.30 tolerated(0.42) benign(0.029) TCGA-EB-A431-01 1 161132472 161132472 C T USP21 Silent p.F283F 0.20 TCGA-EB-A431-01 1 161160826 161160826 C T ADAMTS4 3'UTR 0.25 TCGA-EB-A431-01 1 161167986 161167986 C T ADAMTS4 Nonsense_Mutation p.W144* 0.34 TCGA-EB-A431-01 1 161681097 161681097 C T FCRLA Missense_Mutation p.T134I 0.37 tolerated(0.5) possibly_damaging(0.67) TCGA-EB-A431-01 1 161681098 161681098 C T FCRLA Silent p.T134T 0.38 TCGA-EB-A431-01 1 16261246 16261246 C T SPEN Silent p.I2837I 0.52 TCGA-EB-A431-01 1 163117106 163117106 G A RGS5 3'UTR 0.56 TCGA-EB-A431-01 1 16577146 16577146 G A FBXO42 3'UTR 0.22 TCGA-EB-A431-01 1 169510360 169510360 G A F5 Missense_Mutation p.P1323L 0.18 deleterious_low_confidence(0.03) benign(0.011) TCGA-EB-A431-01 1 169513575 169513575 G A F5 Missense_Mutation p.P645L 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 173454548 173454548 C T PRDX6 Missense_Mutation p.P101S 0.38 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A431-01 1 17420171 17420171 C T PADI2 Nonsense_Mutation p.W140* 0.25 TCGA-EB-A431-01 1 174417261 174417261 C T GPR52 Silent p.S4S 0.30 TCGA-EB-A431-01 1 175372678 175372678 C T TNR Missense_Mutation p.E192K 0.37 tolerated(0.17) benign(0.152) TCGA-EB-A431-01 1 176564652 176564652 G A PAPPA2 Missense_Mutation p.D638N 0.43 tolerated(0.34) benign(0.435) TCGA-EB-A431-01 1 176863828 176863828 C T ASTN1 Missense_Mutation p.G937E 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 176915099 176915099 C T ASTN1 Missense_Mutation p.E738K 0.41 tolerated(0.11) probably_damaging(0.96) TCGA-EB-A431-01 1 176927535 176927535 G A ASTN1 Missense_Mutation p.P561L 0.54 deleterious(0) possibly_damaging(0.571) TCGA-EB-A431-01 1 17939556 17939556 T C ARHGEF10L Missense_Mutation p.S205P 0.13 deleterious(0.03) possibly_damaging(0.889) TCGA-EB-A431-01 1 179564869 179564869 G A TDRD5 Silent p.P249P 0.32 TCGA-EB-A431-01 1 17966743 17966743 C T ARHGEF10L Missense_Mutation p.P740S 0.42 deleterious(0.01) possibly_damaging(0.764) TCGA-EB-A431-01 1 179834370 179834370 G A TOR1AIP2 Intron 0.31 TCGA-EB-A431-01 1 180756944 180756944 C T XPR1 Silent p.F59F 0.19 TCGA-EB-A431-01 1 180897502 180897502 C T KIAA1614 Intron 0.33 TCGA-EB-A431-01 1 180959154 180959154 G T STX6 Missense_Mutation p.S152Y 0.28 deleterious(0) possibly_damaging(0.613) TCGA-EB-A431-01 1 18149627 18149627 C T ACTL8 Missense_Mutation p.P42S 0.39 tolerated(0.24) probably_damaging(0.977) TCGA-EB-A431-01 1 182551259 182551259 G A RNASEL Silent p.F567F 0.37 TCGA-EB-A431-01 1 182827877 182827877 C T DHX9 Missense_Mutation p.P304S 0.40 tolerated(0.63) benign(0.052) TCGA-EB-A431-01 1 183112025 183112025 C T LAMC1 3'UTR 0.44 TCGA-EB-A431-01 1 183559354 183559354 G A NCF2 Silent p.S37S 0.42 TCGA-EB-A431-01 1 1849777 1849777 C T TMEM52 Silent p.Q88Q 0.35 TCGA-EB-A431-01 1 186908283 186908283 G A PLA2G4A Nonsense_Mutation p.W280* 0.41 TCGA-EB-A431-01 1 18703305 18703305 C T IGSF21 Silent p.F371F 0.36 TCGA-EB-A431-01 1 190067866 190067866 G A BRINP3 Missense_Mutation p.S528F 0.20 deleterious(0.01) possibly_damaging(0.726) TCGA-EB-A431-01 1 190195350 190195350 C T BRINP3 Missense_Mutation p.E275K 0.36 tolerated(0.27) benign(0.001) TCGA-EB-A431-01 1 19447784 19447784 G A UBR4 Missense_Mutation p.S3347F 0.24 benign(0) TCGA-EB-A431-01 1 19449389 19449389 G A UBR4 Missense_Mutation p.R3252W 0.35 probably_damaging(0.944) TCGA-EB-A431-01 1 19449390 19449390 G A UBR4 Silent p.L3251L 0.35 TCGA-EB-A431-01 1 19486765 19486765 G A UBR4 Missense_Mutation p.S1806F 0.32 benign(0.252) TCGA-EB-A431-01 1 196642220 196642220 A G CFH Silent p.R57R 0.44 TCGA-EB-A431-01 1 197397047 197397047 C T CRB1 Silent p.F864F 0.30 TCGA-EB-A431-01 1 197876360 197876360 C T C1orf53 3'UTR 0.30 TCGA-EB-A431-01 1 198691586 198691586 T A PTPRC Silent p.I567I 0.20 TCGA-EB-A431-01 1 198711126 198711126 C T PTPRC Silent p.F844F 0.34 TCGA-EB-A431-01 1 200528536 200528536 C T KIF14 Missense_Mutation p.M1425I 0.38 tolerated(0.33) benign(0.001) TCGA-EB-A431-01 1 200869279 200869279 A T C1orf106 Missense_Mutation p.E76D 0.26 tolerated(0.09) probably_damaging(0.976) TCGA-EB-A431-01 1 201030407 201030407 C T CACNA1S Silent p.L1081L 0.37 TCGA-EB-A431-01 1 201035359 201035359 T C CACNA1S Missense_Mutation p.K915E 0.17 deleterious(0) possibly_damaging(0.79) TCGA-EB-A431-01 1 201778349 201778349 G A NAV1 Missense_Mutation p.R1422Q 0.32 deleterious(0.02) probably_damaging(0.937) TCGA-EB-A431-01 1 203014966 203014966 C T PPFIA4 Intron 0.41 TCGA-EB-A431-01 1 203054943 203054943 G A MYOG Silent p.P49P 0.37 TCGA-EB-A431-01 1 203311547 203311547 C T FMOD Missense_Mutation p.G352E 0.16 deleterious(0) probably_damaging(0.981) TCGA-EB-A431-01 1 204588349 204588349 C T LRRN2 Missense_Mutation p.E258K 0.29 tolerated(0.15) benign(0.02) TCGA-EB-A431-01 1 20471158 20471158 G A PLA2G2F Missense_Mutation p.E134K 0.31 tolerated(0.21) possibly_damaging(0.777) TCGA-EB-A431-01 1 204971739 204971739 A T NFASC Missense_Mutation p.K1051I 0.47 tolerated(0.16) unknown(0) TCGA-EB-A431-01 1 205767084 205767084 C T SLC41A1 Missense_Mutation p.E314K 0.38 tolerated(0.12) benign(0.129) TCGA-EB-A431-01 1 205767085 205767085 C T SLC41A1 Silent p.R313R 0.38 TCGA-EB-A431-01 1 205819216 205819216 C T PM20D1 5'UTR 0.62 TCGA-EB-A431-01 1 207103589 207103589 G T PIGR 3'UTR 0.71 TCGA-EB-A431-01 1 207639886 207639886 C T CR2 Missense_Mutation p.S25F 0.49 deleterious(0) possibly_damaging(0.488) TCGA-EB-A431-01 1 207741276 207741276 C T CR1 Missense_Mutation p.P1354S 0.20 tolerated(0.06) possibly_damaging(0.714) TCGA-EB-A431-01 1 212798358 212798358 G T FAM71A Nonsense_Mutation p.E47* 0.21 TCGA-EB-A431-01 1 212798958 212798958 G A FAM71A Missense_Mutation p.D247N 0.45 tolerated(0.42) benign(0.01) TCGA-EB-A431-01 1 214638147 214638147 G A PTPN14 5'UTR 0.27 TCGA-EB-A431-01 1 21546549 21546549 G A ECE1 Missense_Mutation p.R738W 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 215960037 215960037 C T USH2A Silent p.G3454G 0.47 TCGA-EB-A431-01 1 216256814 216256814 C T USH2A Missense_Mutation p.G1761E 0.10 probably_damaging(0.993) TCGA-EB-A431-01 1 216371671 216371671 C T USH2A Missense_Mutation p.R1356K 0.46 benign(0.011) TCGA-EB-A431-01 1 216405327 216405327 G A USH2A Silent p.D987D 0.14 TCGA-EB-A431-01 1 223568522 223568522 G A C1orf65 Missense_Mutation p.E569K 0.17 deleterious(0.01) probably_damaging(0.933) TCGA-EB-A431-01 1 22412950 22412950 G A CDC42 Missense_Mutation p.R66K 0.18 deleterious(0.03) benign(0.05) TCGA-EB-A431-01 1 22446990 22446990 C T WNT4 Silent p.R203R 0.38 TCGA-EB-A431-01 1 224475589 224475589 G A NVL Missense_Mutation p.S561F 0.11 deleterious(0.03) benign(0.396) TCGA-EB-A431-01 1 227441847 227441847 A C CDC42BPA Missense_Mutation p.F63C 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-EB-A431-01 1 227618273 227618273 T A CTD-2090I13.1 RNA 0.38 TCGA-EB-A431-01 1 22902919 22902919 C T EPHA8 Silent p.N123N 0.22 TCGA-EB-A431-01 1 22974214 22974214 G A C1QC Missense_Mutation p.D226N 0.25 tolerated(0.05) benign(0.003) TCGA-EB-A431-01 1 230795218 230795218 C T COG2 Silent p.F27F 0.55 TCGA-EB-A431-01 1 233394228 233394228 C T PCNXL2 Silent p.T460T 0.70 TCGA-EB-A431-01 1 234041307 234041307 G A SLC35F3 Missense_Mutation p.R29Q 0.65 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-EB-A431-01 1 23519924 23519924 C T HTR1D Silent p.G263G 0.22 TCGA-EB-A431-01 1 238090225 238090225 C T RP11-193H5.1 RNA 0.45 TCGA-EB-A431-01 1 241728295 241728295 G A KMO Missense_Mutation p.M208I 0.54 deleterious(0.04) benign(0.305) TCGA-EB-A431-01 1 242511437 242511437 G A PLD5 Silent p.L99L 0.29 TCGA-EB-A431-01 1 242511543 242511543 G A PLD5 Missense_Mutation p.S64F 0.76 deleterious(0) probably_damaging(0.956) TCGA-EB-A431-01 1 246810663 246810663 C T CNST Missense_Mutation p.P387L 0.63 tolerated(0.25) possibly_damaging(0.642) TCGA-EB-A431-01 1 247587777 247587777 C T NLRP3 Silent p.A344A 0.58 TCGA-EB-A431-01 1 248039296 248039296 C T TRIM58 Silent p.V322V 0.62 TCGA-EB-A431-01 1 248402633 248402633 C T OR2M4 Missense_Mutation p.L135F 0.54 deleterious(0.04) benign(0.242) TCGA-EB-A431-01 1 248616405 248616405 T A OR2T2 Missense_Mutation p.F103I 0.13 deleterious(0.01) benign(0.097) TCGA-EB-A431-01 1 248617031 248617031 C T OR2T2 Silent p.S311S 0.32 TCGA-EB-A431-01 1 248637290 248637290 C T OR2T3 Silent p.L213L 0.77 TCGA-EB-A431-01 1 26517248 26517248 C T CATSPER4 Missense_Mutation p.P44S 0.30 tolerated_low_confidence(0.89) benign(0.016) TCGA-EB-A431-01 1 26524858 26524858 C G CATSPER4 Missense_Mutation p.L254V 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 27432322 27432322 G A SLC9A1 Intron 0.18 TCGA-EB-A431-01 1 27701270 27701270 G A FCN3 Silent p.L14L 0.09 TCGA-EB-A431-01 1 28607407 28607407 C T SESN2 3'UTR 0.56 TCGA-EB-A431-01 1 29189408 29189408 C T OPRD1 Silent p.R244R 0.28 TCGA-EB-A431-01 1 32096337 32096337 G A PEF1 Silent p.I244I 0.41 TCGA-EB-A431-01 1 32148937 32148937 G A COL16A1 Nonsense_Mutation p.Q805* 0.31 TCGA-EB-A431-01 1 3342209 3342209 C T PRDM16 Missense_Mutation p.H1002Y 0.25 deleterious(0) probably_damaging(0.962) TCGA-EB-A431-01 1 33998726 33998726 G A CSMD2 Silent p.F3221F 0.38 TCGA-EB-A431-01 1 34003125 34003125 G A CSMD2 Missense_Mutation p.S3095F 0.23 tolerated(0.41) benign(0.014) TCGA-EB-A431-01 1 34046479 34046479 G A CSMD2 Silent p.L2423L 0.21 TCGA-EB-A431-01 1 3411056 3411056 G A MEGF6 Silent p.P1336P 0.29 TCGA-EB-A431-01 1 34330088 34330088 C T HMGB4 Missense_Mutation p.S99F 0.14 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 1 35320859 35320859 G A SMIM12 3'UTR 0.19 TCGA-EB-A431-01 1 3551793 3551793 G A WRAP73 Silent p.S223S 0.16 TCGA-EB-A431-01 1 36360811 36360811 C T AGO1 Missense_Mutation p.P321S 0.19 tolerated(0.08) benign(0.373) TCGA-EB-A431-01 1 37282875 37282875 G A GRIK3 Missense_Mutation p.S626F 0.61 deleterious(0) probably_damaging(0.983) TCGA-EB-A431-01 1 37337828 37337828 G A GRIK3 Silent p.F231F 0.24 TCGA-EB-A431-01 1 3755542 3755542 G A CEP104 Silent p.L293L 0.19 TCGA-EB-A431-01 1 38078583 38078583 C T RSPO1 Silent p.R212R 0.34 TCGA-EB-A431-01 1 38355378 38355378 G A INPP5B Silent p.S216S 0.18 TCGA-EB-A431-01 1 40544245 40544245 G A PPT1 Missense_Mutation p.P238L 0.54 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 1 40703598 40703598 C T RLF Missense_Mutation p.S1075L 0.61 deleterious(0.02) benign(0.138) TCGA-EB-A431-01 1 40705455 40705455 C T RLF Missense_Mutation p.P1694L 0.14 tolerated(0.76) benign(0) TCGA-EB-A431-01 1 40775636 40775636 C T COL9A2 Missense_Mutation p.G274S 0.17 deleterious(0.01) possibly_damaging(0.855) TCGA-EB-A431-01 1 41094951 41094951 G A RIMS3 Missense_Mutation p.S189F 0.59 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-EB-A431-01 1 41098844 41098844 G A RIMS3 Silent p.F123F 0.23 TCGA-EB-A431-01 1 42049243 42049243 G A HIVEP3 Missense_Mutation p.T409I 0.15 probably_damaging(0.998) TCGA-EB-A431-01 1 43748474 43748474 C T C1orf210 Silent p.R108R 0.58 TCGA-EB-A431-01 1 43885493 43885493 C T SZT2 Missense_Mutation p.S323F 0.24 deleterious(0) probably_damaging(0.965) TCGA-EB-A431-01 1 43885494 43885494 C T SZT2 Silent p.S323S 0.23 TCGA-EB-A431-01 1 43891598 43891598 C T SZT2 Silent p.P969P 0.18 TCGA-EB-A431-01 1 44035263 44035263 G A PTPRF Missense_Mutation p.E128K 0.15 tolerated(0.07) benign(0.016) TCGA-EB-A431-01 1 45980212 45980212 G A PRDX1 Nonsense_Mutation p.Q161* 0.55 TCGA-EB-A431-01 1 46494544 46494544 G A MAST2 Silent p.L719L 0.51 TCGA-EB-A431-01 1 46659334 46659334 A T POMGNT1 Intron 0.25 TCGA-EB-A431-01 1 46977718 46977718 C T DMBX1 Missense_Mutation p.S229F 0.21 tolerated(0.45) probably_damaging(0.945) TCGA-EB-A431-01 1 53974864 53974864 C T GLIS1 Missense_Mutation p.G545E 0.24 deleterious(0.02) benign(0.439) TCGA-EB-A431-01 1 54060070 54060070 G A GLIS1 Missense_Mutation p.P169L 0.38 tolerated(0.05) probably_damaging(0.998) TCGA-EB-A431-01 1 55224465 55224465 G A PARS2 Missense_Mutation p.P124S 0.17 tolerated(1) benign(0.015) TCGA-EB-A431-01 1 55598348 55598348 G A USP24 Missense_Mutation p.S1136F 0.23 deleterious(0.01) benign(0.151) TCGA-EB-A431-01 1 56977725 56977725 G A PPAP2B Missense_Mutation p.R245C 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 56990164 56990164 G A PPAP2B Silent p.N120N 0.30 TCGA-EB-A431-01 1 57157076 57157076 G A PRKAA2 Silent p.V82V 0.47 TCGA-EB-A431-01 1 62739150 62739150 G A KANK4 Silent p.L542L 0.26 TCGA-EB-A431-01 1 64089081 64089081 C T PGM1 5'UTR 0.21 TCGA-EB-A431-01 1 66062172 66062172 G A LEPR Missense_Mutation p.D249N 0.18 tolerated(0.11) benign(0.175) TCGA-EB-A431-01 1 66067341 66067341 C T LEPR Missense_Mutation p.R421C 0.17 deleterious(0) probably_damaging(0.971) TCGA-EB-A431-01 1 67109305 67109305 T A SGIP1 Missense_Mutation p.I121N 0.46 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 1 67109306 67109306 T A SGIP1 Silent p.I121I 0.48 TCGA-EB-A431-01 1 67303398 67303398 G A WDR78 Missense_Mutation p.P526S 0.24 deleterious(0) possibly_damaging(0.842) TCGA-EB-A431-01 1 70257747 70257747 C T LRRC7 Silent p.L71L 0.22 TCGA-EB-A431-01 1 70493934 70493934 G A LRRC7 Silent p.V587V 0.47 TCGA-EB-A431-01 1 78479070 78479070 C T DNAJB4 Nonsense_Mutation p.R183* 0.38 TCGA-EB-A431-01 1 7907921 7907921 C T UTS2 Missense_Mutation p.D109N 0.39 tolerated(0.1) probably_damaging(0.948) TCGA-EB-A431-01 1 82409249 82409249 G A LPHN2 Missense_Mutation p.E332K 0.18 deleterious(0.01) possibly_damaging(0.804) TCGA-EB-A431-01 1 82445571 82445571 G A LPHN2 Missense_Mutation p.V997M 0.35 tolerated(0.35) probably_damaging(0.92) TCGA-EB-A431-01 1 8420788 8420788 G A RERE Missense_Mutation p.H927Y 0.27 unknown(0) TCGA-EB-A431-01 1 86313446 86313446 C T COL24A1 Missense_Mutation p.G1122R 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 86375655 86375655 G A COL24A1 Missense_Mutation p.P883L 0.31 deleterious(0.05) probably_damaging(0.976) TCGA-EB-A431-01 1 90058694 90058694 G A LRRC8B 3'UTR 0.33 TCGA-EB-A431-01 1 90398923 90398923 C T LRRC8D Missense_Mutation p.S99F 0.27 tolerated(0.08) benign(0.172) TCGA-EB-A431-01 1 90400075 90400075 C T LRRC8D Missense_Mutation p.P483L 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 906159 906159 G A PLEKHN1 Intron 0.53 TCGA-EB-A431-01 1 92445161 92445161 T A BRDT Silent p.I378I 0.27 TCGA-EB-A431-01 1 94578550 94578550 G A ABCA4 Missense_Mutation p.P47S 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 1 94667336 94667336 T C ARHGAP29 Silent p.K407K 0.18 TCGA-EB-A431-01 20 1961444 1961444 T G PDYN Missense_Mutation p.K97T 0.41 deleterious(0.03) benign(0.098) TCGA-EB-A431-01 20 19664914 19664914 C T SLC24A3 Silent p.I332I 0.59 TCGA-EB-A431-01 20 23669594 23669594 G A CST4 Silent p.L5L 0.45 TCGA-EB-A431-01 20 25457027 25457027 G A NINL Missense_Mutation p.S967L 0.47 tolerated(0.15) benign(0.001) TCGA-EB-A431-01 20 29847349 29847349 G A DEFB115 Missense_Mutation p.E61K 0.28 tolerated(0.9) benign(0) TCGA-EB-A431-01 20 29993905 29993905 G A DEFB121 Silent p.V17V 0.29 TCGA-EB-A431-01 20 30227862 30227862 G A COX4I2 Missense_Mutation p.G70E 0.42 deleterious(0) probably_damaging(0.993) TCGA-EB-A431-01 20 30227868 30227868 G A COX4I2 Nonsense_Mutation p.W72* 0.41 TCGA-EB-A431-01 20 30689246 30689246 C T HCK Missense_Mutation p.P502L 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 20 31656706 31656706 C T BPIFB3 Missense_Mutation p.S359F 0.29 deleterious(0.02) benign(0.076) TCGA-EB-A431-01 20 31897539 31897539 C T BPIFB1 Missense_Mutation p.S474F 0.36 deleterious(0) possibly_damaging(0.809) TCGA-EB-A431-01 20 32369149 32369149 C T ZNF341 Silent p.L552L 0.30 TCGA-EB-A431-01 20 33570325 33570325 C T MYH7B Silent p.V239V 0.21 TCGA-EB-A431-01 20 33577572 33577572 G A MYH7B Silent p.E581E 0.16 TCGA-EB-A431-01 20 33585423 33585423 G A MYH7B Missense_Mutation p.E1285K 0.43 possibly_damaging(0.803) TCGA-EB-A431-01 20 34022160 34022160 C T GDF5 Silent p.R351R 0.43 TCGA-EB-A431-01 20 34241899 34241899 A T RBM12 Missense_Mutation p.F449Y 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-EB-A431-01 20 34242626 34242626 G A RBM12 Missense_Mutation p.P207S 0.20 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A431-01 20 3529890 3529890 C T ATRN Silent p.L339L 0.26 TCGA-EB-A431-01 20 3529891 3529891 C T ATRN Missense_Mutation p.P340S 0.25 tolerated(0.4) benign(0.038) TCGA-EB-A431-01 20 35690558 35690558 G A RBL1 Missense_Mutation p.R338C 0.18 tolerated(0.23) benign(0.241) TCGA-EB-A431-01 20 35742522 35742522 G A MROH8 Silent p.S881S 0.38 TCGA-EB-A431-01 20 36869135 36869135 G A KIAA1755 Silent p.P466P 0.42 TCGA-EB-A431-01 20 36997697 36997697 C T LBP Missense_Mutation p.P347L 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A431-01 20 39979003 39979003 C T LPIN3 Silent p.P356P 0.32 TCGA-EB-A431-01 20 40050216 40050216 G A CHD6 Nonsense_Mutation p.Q1687* 0.28 TCGA-EB-A431-01 20 40733217 40733217 C T PTPRT Missense_Mutation p.E1178K 0.18 deleterious(0) probably_damaging(0.98) TCGA-EB-A431-01 20 41101087 41101087 G A PTPRT Silent p.T423T 0.22 TCGA-EB-A431-01 20 41420107 41420107 C T PTPRT Splice_Site p.X72_splice 0.44 TCGA-EB-A431-01 20 42199313 42199313 C T SGK2 Silent p.Y199Y 0.15 TCGA-EB-A431-01 20 44174380 44174380 C T EPPIN-WFDC6 Missense_Mutation p.E41K 0.21 tolerated(0.06) benign(0.299) TCGA-EB-A431-01 20 44351096 44351096 G A SPINT4 Silent p.A30A 0.18 TCGA-EB-A431-01 20 44523713 44523713 C T CTSA Silent p.N361N 0.43 TCGA-EB-A431-01 20 45315729 45315729 A G TP53RK Missense_Mutation p.L142S 0.21 deleterious(0) probably_damaging(0.977) TCGA-EB-A431-01 20 48600620 48600620 C T SNAI1 Silent p.S114S 0.20 TCGA-EB-A431-01 20 48600845 48600845 C G SNAI1 Missense_Mutation p.F189L 0.31 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 20 50139769 50139769 G A NFATC2 Silent p.S337S 0.22 TCGA-EB-A431-01 20 5086943 5086943 G A TMEM230 Missense_Mutation p.P101L 0.35 deleterious(0.04) benign(0.12) TCGA-EB-A431-01 20 55033825 55033825 C T CASS4 3'UTR 0.77 TCGA-EB-A431-01 20 55033826 55033826 C T CASS4 3'UTR 0.77 TCGA-EB-A431-01 20 56140668 56140668 C T PCK1 Silent p.P559P 0.65 TCGA-EB-A431-01 20 58475311 58475311 G A SYCP2 Missense_Mutation p.P429L 0.28 tolerated(0.08) benign(0.066) TCGA-EB-A431-01 20 5903218 5903218 C T CHGB Missense_Mutation p.P143L 0.67 tolerated(0.18) benign(0.073) TCGA-EB-A431-01 20 60887333 60887333 G A LAMA5 Missense_Mutation p.R3134C 0.56 benign(0.253) TCGA-EB-A431-01 20 60921246 60921246 C T LAMA5 Silent p.T436T 0.82 TCGA-EB-A431-01 20 61945215 61945215 C T COL20A1 Missense_Mutation p.P777L 0.86 tolerated(0.35) benign(0.03) TCGA-EB-A431-01 20 62421849 62421849 C T ZBTB46 Missense_Mutation p.D88N 0.35 deleterious(0.05) probably_damaging(0.996) TCGA-EB-A431-01 20 62422069 62422069 G A ZBTB46 Silent p.Y14Y 0.35 TCGA-EB-A431-01 20 948621 948621 G A RSPO4 Silent p.I80I 0.50 TCGA-EB-A431-01 20 9510431 9510431 C T LAMP5 Silent p.I269I 0.61 TCGA-EB-A431-01 20 9520098 9520098 G A PAK7 3'UTR 0.60 TCGA-EB-A431-01 21 10862642 10862642 C T IGHV1OR21-1 Silent p.I7I 0.10 TCGA-EB-A431-01 21 10951412 10951412 G A TPTE Silent p.F100F 0.11 TCGA-EB-A431-01 21 11026821 11026821 G A BAGE2 RNA 0.13 TCGA-EB-A431-01 21 11029671 11029671 G A BAGE2 RNA 0.07 TCGA-EB-A431-01 21 11038800 11038800 G A BAGE2 RNA 0.15 TCGA-EB-A431-01 21 11038949 11038949 G A BAGE2 RNA 0.06 TCGA-EB-A431-01 21 11039010 11039010 C T BAGE2 RNA 0.08 TCGA-EB-A431-01 21 15326390 15326390 C T ANKRD20A11P RNA 0.18 TCGA-EB-A431-01 21 22370872 22370872 C T NCAM2 5'UTR 0.44 TCGA-EB-A431-01 21 27840739 27840739 C T CYYR1 3'UTR 0.19 TCGA-EB-A431-01 21 30400220 30400220 C T USP16 5'UTR 0.13 TCGA-EB-A431-01 21 32638596 32638596 G A TIAM1 Silent p.S231S 0.56 TCGA-EB-A431-01 21 32639034 32639034 G A TIAM1 Silent p.F85F 0.20 TCGA-EB-A431-01 21 35254664 35254664 C T ITSN1 Missense_Mutation p.L1487F 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A431-01 21 39755657 39755657 G A ERG Missense_Mutation p.R377C 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 21 41710048 41710048 C T DSCAM Missense_Mutation p.S588N 0.35 deleterious(0.02) probably_damaging(0.969) TCGA-EB-A431-01 21 42629149 42629149 C T BACE2 Missense_Mutation p.P400L 0.22 tolerated(0.08) benign(0.285) TCGA-EB-A431-01 21 43298834 43298834 G A PRDM15 Missense_Mutation p.P128L 0.20 deleterious_low_confidence(0) benign(0) TCGA-EB-A431-01 21 43547193 43547193 C T UMODL1 Missense_Mutation p.P1252L 0.14 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 21 44427659 44427677 CAGAAGGAGTGAGCCCTCC - PKNOX1 Frame_Shift_Del p.E38Lfs*24 0.19 TCGA-EB-A431-01 21 44492152 44492152 C T CBS Missense_Mutation p.R51K 0.48 tolerated(0.86) benign(0.001) TCGA-EB-A431-01 21 45094993 45094993 C T RRP1B Silent p.F166F 0.28 TCGA-EB-A431-01 21 45535577 45535577 C T PWP2 Silent p.Y204Y 0.34 TCGA-EB-A431-01 21 45811297 45811297 C T TRPM2 Missense_Mutation p.P528L 0.21 deleterious(0.01) possibly_damaging(0.616) TCGA-EB-A431-01 21 45978389 45978389 G A KRTAP10-3 Silent p.G70G 0.51 TCGA-EB-A431-01 21 45993945 45993945 C T KRTAP10-4 Missense_Mutation p.P104S 0.13 tolerated(0.1) unknown(0) TCGA-EB-A431-01 21 46057908 46057908 C T KRTAP10-10 Missense_Mutation p.L192F 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 21 46077903 46077903 C T KRTAP12-3 Missense_Mutation p.H3Y 0.20 deleterious(0.04) benign(0.138) TCGA-EB-A431-01 21 46086818 46086818 G A KRTAP12-2 5'UTR 0.43 TCGA-EB-A431-01 21 47541502 47541502 C T COL6A2 Silent p.P497P 0.11 TCGA-EB-A431-01 21 47614446 47614446 G A LSS Silent p.I649I 0.26 TCGA-EB-A431-01 21 47981686 47981686 C T DIP2A Missense_Mutation p.P1353S 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A431-01 21 48064312 48064312 C T PRMT2 Missense_Mutation p.P80L 0.15 deleterious(0) probably_damaging(0.934) TCGA-EB-A431-01 22 16449579 16449579 T A OR11H1 Missense_Mutation p.M76L 0.33 tolerated(0.1) benign(0) TCGA-EB-A431-01 22 17073462 17073462 C T CCT8L2 5'UTR 0.24 TCGA-EB-A431-01 22 17308477 17308477 C T HSFY1P1 RNA 0.67 TCGA-EB-A431-01 22 17630532 17630532 G A CECR5 Missense_Mutation p.S77F 0.31 deleterious(0.01) possibly_damaging(0.796) TCGA-EB-A431-01 22 17669279 17669279 G A CECR1 Missense_Mutation p.P344L 0.29 deleterious(0.05) probably_damaging(0.966) TCGA-EB-A431-01 22 19175507 19175507 C T CLTCL1 Missense_Mutation p.E1474K 0.46 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 22 19865664 19865664 A C TXNRD2 Missense_Mutation p.F465C 0.34 deleterious(0) probably_damaging(0.986) TCGA-EB-A431-01 22 20073669 20073669 C T DGCR8 Silent p.L61L 0.22 TCGA-EB-A431-01 22 20074187 20074187 C T DGCR8 Missense_Mutation p.A234V 0.17 tolerated(0.19) benign(0.002) TCGA-EB-A431-01 22 20074188 20074188 C T DGCR8 Silent p.A234A 0.18 TCGA-EB-A431-01 22 21288339 21288339 C T CRKL Missense_Mutation p.S195F 0.28 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 22 22749788 22749788 G A IGLV7-43 Silent p.E104E 0.25 TCGA-EB-A431-01 22 22869216 22869216 C T ZNF280A Missense_Mutation p.E247K 0.26 tolerated(0.86) benign(0.002) TCGA-EB-A431-01 22 22892567 22892567 G A PRAME Silent p.L178L 0.53 TCGA-EB-A431-01 22 23438221 23438221 C T GNAZ Silent p.P113P 0.15 TCGA-EB-A431-01 22 24919696 24919696 C T UPB1 Silent p.L342L 0.21 TCGA-EB-A431-01 22 25243716 25243716 G A SGSM1 Silent p.E85E 0.23 TCGA-EB-A431-01 22 25603032 25603032 C T CRYBB3 Silent p.F163F 0.14 TCGA-EB-A431-01 22 25623916 25623916 G A CRYBB2 Silent p.R90R 0.45 TCGA-EB-A431-01 22 26348290 26348290 G A MYO18B Silent p.Q1957Q 0.21 TCGA-EB-A431-01 22 26895328 26895328 C T TFIP11 Silent p.E357E 0.59 TCGA-EB-A431-01 22 27026306 27026306 G A CRYBA4 Nonsense_Mutation p.W149* 0.23 TCGA-EB-A431-01 22 29885196 29885196 G A NEFH Missense_Mutation p.E523K 0.15 tolerated(0.06) unknown(0) TCGA-EB-A431-01 22 29935384 29935384 G C THOC5 Silent p.V178V 0.50 TCGA-EB-A431-01 22 30639987 30639987 C T LIF Missense_Mutation p.D88N 0.17 tolerated(0.43) benign(0.047) TCGA-EB-A431-01 22 30639988 30639988 C T LIF Silent p.T87T 0.15 TCGA-EB-A431-01 22 30862971 30862971 C T SEC14L3 Missense_Mutation p.E173K 0.23 tolerated(0.1) benign(0.386) TCGA-EB-A431-01 22 31289498 31289498 G A OSBP2 Missense_Mutation p.R680K 0.30 tolerated(0.39) benign(0.401) TCGA-EB-A431-01 22 31669487 31669487 C T LIMK2 Silent p.L515L 0.14 TCGA-EB-A431-01 22 32352173 32352173 C T YWHAH Silent p.L45L 0.39 TCGA-EB-A431-01 22 32828438 32828438 G A BPIFC Silent p.T357T 0.17 TCGA-EB-A431-01 22 32841898 32841898 G A BPIFC Missense_Mutation p.P154S 0.52 tolerated(0.14) probably_damaging(1) TCGA-EB-A431-01 22 33402639 33402639 G A SYN3 Silent p.F3F 0.07 TCGA-EB-A431-01 22 35782688 35782688 C A HMOX1 Missense_Mutation p.A52D 0.41 deleterious(0.01) possibly_damaging(0.844) TCGA-EB-A431-01 22 35804452 35804452 C T MCM5 Silent p.P216P 0.22 TCGA-EB-A431-01 22 36537946 36537946 G A APOL3 Missense_Mutation p.R171C 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-EB-A431-01 22 36681241 36681241 G A MYH9 Silent p.S1803S 0.37 TCGA-EB-A431-01 22 36897298 36897298 G A FOXRED2 Silent p.F402F 0.36 TCGA-EB-A431-01 22 37707513 37707513 G A CYTH4 Missense_Mutation p.G301E 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 22 38121320 38121320 C T TRIOBP Silent p.P919P 0.21 TCGA-EB-A431-01 22 38321817 38321817 C T MICALL1 Missense_Mutation p.A411V 0.27 tolerated(0.2) benign(0.118) TCGA-EB-A431-01 22 38321818 38321818 C T MICALL1 Silent p.A411A 0.27 TCGA-EB-A431-01 22 39262714 39262714 G A CBX6 Missense_Mutation p.P247S 0.27 tolerated(0.51) benign(0.004) TCGA-EB-A431-01 22 39411728 39411728 C T APOBEC3C Missense_Mutation p.S49F 0.31 tolerated(0.76) benign(0.01) TCGA-EB-A431-01 22 39772070 39772070 C T SYNGR1 Silent p.F117F 0.16 TCGA-EB-A431-01 22 39773604 39773604 G A SYNGR1 Intron 0.39 TCGA-EB-A431-01 22 39996589 39996589 G A CACNA1I Missense_Mutation p.G138E 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 22 40055851 40055851 G A CACNA1I Silent p.Q866Q 0.25 TCGA-EB-A431-01 22 40059813 40059813 C T CACNA1I Silent p.A1188A 0.11 TCGA-EB-A431-01 22 40139958 40139958 G A ENTHD1 Missense_Mutation p.S517F 0.21 deleterious(0) probably_damaging(0.935) TCGA-EB-A431-01 22 40364148 40364148 G A GRAP2 Missense_Mutation p.D188N 0.20 tolerated(0.06) possibly_damaging(0.764) TCGA-EB-A431-01 22 40417534 40417534 G A FAM83F Missense_Mutation p.M340I 0.32 deleterious(0.01) benign(0.284) TCGA-EB-A431-01 22 41974862 41974862 G A PMM1 Silent p.F166F 0.22 TCGA-EB-A431-01 22 42141933 42141933 C T MEI1 Missense_Mutation p.P528L 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-EB-A431-01 22 42150040 42150040 T G MEI1 Silent p.P647P 0.22 TCGA-EB-A431-01 22 42390837 42390837 C T SEPT3 Intron 0.19 TCGA-EB-A431-01 22 42910224 42910224 G A RRP7A Silent p.L215L 0.09 TCGA-EB-A431-01 22 43089247 43089247 G A A4GALT Silent p.F237F 0.25 TCGA-EB-A431-01 22 43089294 43089294 C T A4GALT Missense_Mutation p.A222T 0.28 deleterious(0.01) possibly_damaging(0.874) TCGA-EB-A431-01 22 43089295 43089295 C T A4GALT Silent p.L221L 0.28 TCGA-EB-A431-01 22 43972186 43972186 G A EFCAB6 Silent p.F1137F 0.11 TCGA-EB-A431-01 22 43996075 43996075 G A EFCAB6 Missense_Mutation p.S917L 0.13 tolerated(0.08) benign(0.288) TCGA-EB-A431-01 22 44586492 44586492 C T PARVG Silent p.F150F 0.10 TCGA-EB-A431-01 22 44692683 44692683 G A KIAA1644 Silent p.L50L 0.12 TCGA-EB-A431-01 22 45312300 45312300 G A PHF21B Missense_Mutation p.P142S 0.11 tolerated_low_confidence(0.07) benign(0.343) TCGA-EB-A431-01 22 45599849 45599849 G A KIAA0930 Silent p.T183T 0.18 TCGA-EB-A431-01 22 45691461 45691461 G A UPK3A Missense_Mutation p.G242E 0.11 tolerated(0.34) probably_damaging(0.989) TCGA-EB-A431-01 22 45758822 45758822 G A SMC1B Silent p.I835I 0.25 TCGA-EB-A431-01 22 45959050 45959050 G A FBLN1 Intron 0.14 TCGA-EB-A431-01 22 50279178 50279178 C T ZBED4 Missense_Mutation p.S623F 0.23 deleterious(0.03) benign(0.078) TCGA-EB-A431-01 22 50553569 50553569 G A MOV10L1 Missense_Mutation p.G385R 0.14 tolerated(0.53) benign(0.002) TCGA-EB-A431-01 22 50720702 50720702 G A PLXNB2 Silent p.L1010L 0.16 TCGA-EB-A431-01 22 50902970 50902970 G A SBF1 Silent p.P543P 0.16 TCGA-EB-A431-01 22 50906820 50906820 G A SBF1 Silent p.P42P 0.36 TCGA-EB-A431-01 22 50941960 50941960 G A LMF2 Missense_Mutation p.R662W 0.33 tolerated(0.2) benign(0.002) TCGA-EB-A431-01 2 100210592 100210592 G A AFF3 Missense_Mutation p.P536S 0.71 tolerated(0.32) benign(0.006) TCGA-EB-A431-01 2 101580612 101580612 C T NPAS2 Missense_Mutation p.R231C 0.39 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 2 101582127 101582127 C T NPAS2 Missense_Mutation p.P269L 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 103317614 103317614 A T SLC9A2 Nonsense_Mutation p.K558* 0.23 TCGA-EB-A431-01 2 105473243 105473243 C T POU3F3 Silent p.F425F 0.35 TCGA-EB-A431-01 2 10584230 10584230 G A ODC1 Missense_Mutation p.P147L 0.28 deleterious(0.02) benign(0.227) TCGA-EB-A431-01 2 108488514 108488514 G A RGPD4 Missense_Mutation p.E1352K 0.66 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 2 109399281 109399281 C T RANBP2 Missense_Mutation p.S3111F 0.55 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 112536282 112536282 C T ANAPC1 Silent p.E1785E 0.11 TCGA-EB-A431-01 2 113420516 113420516 A T SLC20A1 Missense_Mutation p.M652L 0.28 tolerated(0.89) benign(0.002) TCGA-EB-A431-01 2 113763579 113763579 G A IL36A Silent p.G13G 0.33 TCGA-EB-A431-01 2 113890498 113890498 G A IL1RN 3'UTR 0.69 TCGA-EB-A431-01 2 113940670 113940670 G A PSD4 Missense_Mutation p.E213K 0.67 deleterious_low_confidence(0.01) benign(0.231) TCGA-EB-A431-01 2 119600483 119600483 G A EN1 3'UTR 0.29 TCGA-EB-A431-01 2 119600484 119600484 G A EN1 3'UTR 0.29 TCGA-EB-A431-01 2 119739211 119739211 C T MARCO Missense_Mutation p.P294S 0.72 tolerated(0.07) possibly_damaging(0.876) TCGA-EB-A431-01 2 128477558 128477558 G A WDR33 Missense_Mutation p.P681S 0.76 tolerated_low_confidence(0.08) unknown(0) TCGA-EB-A431-01 2 131520820 131520820 C T AMER3 Missense_Mutation p.S392L 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 131522018 131522018 G A AMER3 Silent p.L791L 0.33 TCGA-EB-A431-01 2 131975995 131975995 C T POTEE Missense_Mutation p.S7F 0.58 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EB-A431-01 2 135712018 135712018 C T CCNT2 Missense_Mutation p.P665S 0.66 tolerated(0.14) probably_damaging(0.997) TCGA-EB-A431-01 2 136594257 136594257 G T LCT Silent p.S161S 0.16 TCGA-EB-A431-01 2 137988616 137988616 G A THSD7B Missense_Mutation p.E576K 0.32 tolerated(0.09) possibly_damaging(0.801) TCGA-EB-A431-01 2 138759652 138759652 C T HNMT Missense_Mutation p.S106L 0.44 tolerated(0.08) possibly_damaging(0.582) TCGA-EB-A431-01 2 153476151 153476151 C T FMNL2 Missense_Mutation p.P586S 0.70 possibly_damaging(0.803) TCGA-EB-A431-01 2 155102488 155102488 C T GALNT13 Missense_Mutation p.P284S 0.52 deleterious(0) possibly_damaging(0.529) TCGA-EB-A431-01 2 158165122 158165122 G A GALNT5 Missense_Mutation p.G855E 0.34 tolerated(0.34) benign(0.039) TCGA-EB-A431-01 2 158272554 158272554 G A CYTIP Nonsense_Mutation p.R239* 0.59 TCGA-EB-A431-01 2 161029190 161029190 C T ITGB6 Missense_Mutation p.D271N 0.23 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 2 163360988 163360988 C T KCNH7 Missense_Mutation p.D365N 0.28 deleterious(0.04) benign(0.081) TCGA-EB-A431-01 2 163393492 163393492 C T KCNH7 Missense_Mutation p.E136K 0.32 tolerated(0.86) benign(0.002) TCGA-EB-A431-01 2 165551061 165551061 G A COBLL1 Silent p.S985S 0.28 TCGA-EB-A431-01 2 166908299 166908299 C T SCN1A Silent p.V298V 0.33 TCGA-EB-A431-01 2 167163512 167163512 G A SCN9A Missense_Mutation p.P111S 0.75 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A431-01 2 167330398 167330398 G A SCN7A Silent p.P118P 0.34 TCGA-EB-A431-01 2 170417084 170417084 G A FASTKD1 Missense_Mutation p.H262Y 0.38 tolerated(0.21) benign(0.229) TCGA-EB-A431-01 2 171716373 171716373 G A GAD1 Missense_Mutation p.R589K 0.25 deleterious(0.04) possibly_damaging(0.86) TCGA-EB-A431-01 2 175618428 175618428 C T CHRNA1 Missense_Mutation p.G219E 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 176981827 176981827 G A HOXD10 Missense_Mutation p.R89Q 0.28 deleterious(0) probably_damaging(0.99) TCGA-EB-A431-01 2 179408788 179408788 G A TTN Missense_Mutation p.A32028V 0.17 TCGA-EB-A431-01 2 179408964 179408964 C T TTN Missense_Mutation p.E31998K 0.73 TCGA-EB-A431-01 2 179417578 179417578 C T TTN Missense_Mutation p.E30017K 0.70 TCGA-EB-A431-01 2 179429135 179429135 C T TTN Missense_Mutation p.E27242K 0.23 TCGA-EB-A431-01 2 179434109 179434109 C T TTN Missense_Mutation p.E25584K 0.69 TCGA-EB-A431-01 2 179598590 179598590 C A TTN Missense_Mutation p.D5176Y 0.29 TCGA-EB-A431-01 2 179614044 179614044 C T TTN Intron 0.64 TCGA-EB-A431-01 2 179616512 179616512 G A TTN Intron 0.58 TCGA-EB-A431-01 2 182394344 182394344 C T ITGA4 Missense_Mutation p.T836I 0.33 tolerated(0.19) benign(0.178) TCGA-EB-A431-01 2 187698678 187698678 G A ZSWIM2 Missense_Mutation p.R275C 0.70 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 189868786 189868786 C T COL3A1 Missense_Mutation p.P914S 0.27 unknown(0) TCGA-EB-A431-01 2 189910627 189910627 G A COL5A2 Missense_Mutation p.R1070C 0.24 unknown(0) TCGA-EB-A431-01 2 189945763 189945763 G A COL5A2 Missense_Mutation p.R287C 0.57 probably_damaging(0.991) TCGA-EB-A431-01 2 192273810 192273810 C T MYO1B Missense_Mutation p.S891F 0.36 deleterious(0) possibly_damaging(0.845) TCGA-EB-A431-01 2 1926532 1926532 G A MYT1L Silent p.L337L 0.60 TCGA-EB-A431-01 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.59 TCGA-EB-A431-01 2 196651890 196651890 T A DNAH7 Missense_Mutation p.E3574D 0.61 tolerated(0.59) benign(0.243) TCGA-EB-A431-01 2 196825609 196825609 G A DNAH7 Missense_Mutation p.R756C 0.72 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A431-01 2 196825610 196825610 T A DNAH7 Missense_Mutation p.Q755H 0.72 tolerated(0.22) possibly_damaging(0.796) TCGA-EB-A431-01 2 1983503 1983503 C T MYT1L Missense_Mutation p.G16E 0.23 deleterious(0) unknown(0) TCGA-EB-A431-01 2 204599649 204599649 C T CD28 3'UTR 0.32 TCGA-EB-A431-01 2 206641283 206641283 G A NRP2 Intron 0.52 TCGA-EB-A431-01 2 207175506 207175506 G T ZDBF2 Missense_Mutation p.R2085M 0.57 tolerated(0.1) possibly_damaging(0.507) TCGA-EB-A431-01 2 219695588 219695588 C T PRKAG3 Nonsense_Mutation p.W37* 0.59 TCGA-EB-A431-01 2 220136072 220136072 C T TUBA4B RNA 0.34 TCGA-EB-A431-01 2 220337806 220337806 C T SPEG Silent p.L1379L 0.37 TCGA-EB-A431-01 2 220354476 220354476 C T SPEG Silent p.A2912A 0.72 TCGA-EB-A431-01 2 226446814 226446814 C T NYAP2 Silent p.S227S 0.36 TCGA-EB-A431-01 2 227729386 227729386 G C RHBDD1 5'UTR 0.57 TCGA-EB-A431-01 2 227896750 227896750 G A COL4A4 Missense_Mutation p.P1243L 0.17 unknown(0) TCGA-EB-A431-01 2 227896751 227896751 G A COL4A4 Missense_Mutation p.P1243S 0.17 unknown(0) TCGA-EB-A431-01 2 229046343 229046343 G A SPHKAP 5'UTR 0.27 TCGA-EB-A431-01 2 229890381 229890381 C T PID1 Silent p.E238E 0.25 TCGA-EB-A431-01 2 232143139 232143139 C G ARMC9 Missense_Mutation p.L507V 0.73 deleterious(0) probably_damaging(0.943) TCGA-EB-A431-01 2 233995312 233995312 C T INPP5D Missense_Mutation p.P207S 0.68 deleterious(0.05) probably_damaging(1) TCGA-EB-A431-01 2 234436094 234436094 T A USP40 Nonsense_Mutation p.K573* 0.32 TCGA-EB-A431-01 2 234580612 234580612 C T UGT1A9 Missense_Mutation p.P11L 0.61 tolerated(0.41) benign(0.002) TCGA-EB-A431-01 2 234681093 234681093 C T UGT1A4 Missense_Mutation p.A498V 0.66 tolerated(0.13) probably_damaging(0.999) TCGA-EB-A431-01 2 234750649 234750649 G A HJURP Silent p.T259T 0.35 TCGA-EB-A431-01 2 237489510 237489510 C T ACKR3 Silent p.F134F 0.31 TCGA-EB-A431-01 2 238973090 238973090 C T SCLY Missense_Mutation p.P69L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 239353082 239353082 C T ASB1 Silent p.I198I 0.29 TCGA-EB-A431-01 2 242054518 242054518 G A PASK Silent p.F1091F 0.75 TCGA-EB-A431-01 2 242098640 242098640 C T PPP1R7 Missense_Mutation p.R106C 0.61 deleterious(0) possibly_damaging(0.751) TCGA-EB-A431-01 2 26707403 26707403 T A OTOF Nonsense_Mutation p.K382* 0.25 TCGA-EB-A431-01 2 27566214 27566214 G A GTF3C2 Missense_Mutation p.P70S 0.28 tolerated_low_confidence(0.13) benign(0.006) TCGA-EB-A431-01 2 27728607 27728607 C T GCKR Missense_Mutation p.S258F 0.76 tolerated(0.07) benign(0.258) TCGA-EB-A431-01 2 28849340 28849340 G A PLB1 Missense_Mutation p.G1209R 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 29240740 29240740 C T FAM179A Silent p.I426I 0.38 TCGA-EB-A431-01 2 31596736 31596736 C T XDH Intron 0.50 TCGA-EB-A431-01 2 37035878 37035878 C T VIT Silent p.A551A 0.37 TCGA-EB-A431-01 2 39664106 39664106 G A MAP4K3 Missense_Mutation p.S8F 0.31 deleterious(0) probably_damaging(0.977) TCGA-EB-A431-01 2 44586749 44586749 G A PREPL Missense_Mutation p.H36Y 0.33 tolerated_low_confidence(0.58) benign(0.069) TCGA-EB-A431-01 2 50318524 50318524 T A NRXN1 Missense_Mutation p.R1259W 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 2 50318525 50318525 C A NRXN1 Silent p.T1258T 0.32 TCGA-EB-A431-01 2 53941622 53941622 T C ASB3 Silent p.E328E 0.70 TCGA-EB-A431-01 2 53941624 53941624 C T ASB3 Missense_Mutation p.E328K 0.70 tolerated(0.51) benign(0.002) TCGA-EB-A431-01 2 53977980 53977980 A T ASB3 Missense_Mutation p.L134I 0.22 tolerated(0.08) benign(0.424) TCGA-EB-A431-01 2 60688775 60688775 C T BCL11A Missense_Mutation p.M424I 0.58 deleterious(0) benign(0.019) TCGA-EB-A431-01 2 68607890 68607890 C T PLEK Silent p.D78D 0.59 TCGA-EB-A431-01 2 68622964 68622964 C T PLEK 3'UTR 0.23 TCGA-EB-A431-01 2 69172486 69172486 G A GKN2 3'UTR 0.66 TCGA-EB-A431-01 2 71797023 71797023 G A DYSF Missense_Mutation p.G980R 0.38 deleterious(0) probably_damaging(0.982) TCGA-EB-A431-01 2 76975731 76975731 G A LRRTM4 3'UTR 0.77 TCGA-EB-A431-01 2 79313967 79313967 C T REG1B Missense_Mutation p.E52K 0.50 tolerated(0.76) benign(0.251) TCGA-EB-A431-01 2 86832295 86832295 A T RNF103 Silent p.L243L 0.21 TCGA-EB-A431-01 2 89197133 89197133 C T IGKV5-2 Missense_Mutation p.P60S 0.29 tolerated(0.09) probably_damaging(0.995) TCGA-EB-A431-01 2 89399797 89399797 C T IGKV1-16 Missense_Mutation p.G11R 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-EB-A431-01 2 90139135 90139135 G A IGKV1D-16 Missense_Mutation p.G11R 0.08 tolerated(0.05) probably_damaging(0.972) TCGA-EB-A431-01 2 9528646 9528646 C T ASAP2 Missense_Mutation p.P785L 0.57 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 2 96780866 96780866 G A ADRA2B Silent p.L341L 0.27 TCGA-EB-A431-01 3 108541715 108541715 G A TRAT1 5'UTR 0.26 TCGA-EB-A431-01 3 108568012 108568012 G A TRAT1 Splice_Site p.X72_splice 0.18 TCGA-EB-A431-01 3 109028157 109028157 C T DPPA2 Missense_Mutation p.E68K 0.26 tolerated(0.47) benign(0.001) TCGA-EB-A431-01 3 111603144 111603144 C T PHLDB2 Missense_Mutation p.P74S 0.23 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-EB-A431-01 3 111927084 111927084 C T SLC9C1 Missense_Mutation p.E643K 0.46 deleterious(0.03) probably_damaging(0.913) TCGA-EB-A431-01 3 112724519 112724519 A T C3orf17 Missense_Mutation p.I523N 0.43 tolerated(0.63) benign(0.006) TCGA-EB-A431-01 3 113655185 113655185 G A GRAMD1C Missense_Mutation p.R510Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 3 1189707 1189707 G A CNTN6 Nonsense_Mutation p.W5* 0.27 TCGA-EB-A431-01 3 120394643 120394643 C T HGD Missense_Mutation p.G28E 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-EB-A431-01 3 121206691 121206691 G A POLQ Missense_Mutation p.S1696F 0.21 tolerated(0.74) benign(0.004) TCGA-EB-A431-01 3 121341989 121341989 T G FBXO40 Missense_Mutation p.N571K 0.28 deleterious(0.03) benign(0.005) TCGA-EB-A431-01 3 121342001 121342001 C T FBXO40 Silent p.S575S 0.23 TCGA-EB-A431-01 3 121345595 121345595 A T FBXO40 Missense_Mutation p.E656D 0.20 tolerated(1) benign(0.001) TCGA-EB-A431-01 3 121649722 121649722 C T SLC15A2 Missense_Mutation p.S530F 0.21 deleterious(0.02) benign(0.008) TCGA-EB-A431-01 3 122003054 122003054 C T CASR Silent p.Y761Y 0.16 TCGA-EB-A431-01 3 122277240 122277240 A G PARP9 Silent p.F30F 0.26 TCGA-EB-A431-01 3 122645520 122645520 T C SEMA5B Silent p.P339P 0.13 TCGA-EB-A431-01 3 123332963 123332963 C T MYLK Missense_Mutation p.E1912K 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EB-A431-01 3 123987705 123987705 C T KALRN Missense_Mutation p.S189F 0.45 deleterious(0) possibly_damaging(0.847) TCGA-EB-A431-01 3 124053173 124053173 C T KALRN Missense_Mutation p.S491F 0.27 deleterious(0) possibly_damaging(0.785) TCGA-EB-A431-01 3 124449234 124449234 G A UMPS 5'UTR 0.24 TCGA-EB-A431-01 3 12458228 12458228 C T PPARG Missense_Mutation p.S282F 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 124746350 124746350 G A HEG1 Silent p.A204A 0.19 TCGA-EB-A431-01 3 124807214 124807214 C T SLC12A8 Missense_Mutation p.G641E 0.15 deleterious(0) probably_damaging(0.992) TCGA-EB-A431-01 3 1269605 1269605 G A CNTN6 Missense_Mutation p.G96S 0.22 deleterious(0) probably_damaging(0.984) TCGA-EB-A431-01 3 127393292 127393292 C T ABTB1 Missense_Mutation p.P39S 0.61 deleterious(0.02) possibly_damaging(0.789) TCGA-EB-A431-01 3 127540619 127540619 G A MGLL Missense_Mutation p.P25S 0.18 tolerated(0.18) benign(0.025) TCGA-EB-A431-01 3 127682170 127682170 C T KBTBD12 Missense_Mutation p.S544F 0.18 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A431-01 3 129289910 129289910 G A PLXND1 Silent p.P1191P 0.27 TCGA-EB-A431-01 3 130159278 130159278 C T COL6A5 Silent p.F2032F 0.47 TCGA-EB-A431-01 3 130454764 130454764 A G PIK3R4 Silent p.F272F 0.18 TCGA-EB-A431-01 3 130694321 130694321 C A ATP2C1 Missense_Mutation p.A554E 0.22 tolerated(1) benign(0.041) TCGA-EB-A431-01 3 131418796 131418796 G A CPNE4 Missense_Mutation p.S130F 0.33 deleterious(0) benign(0.259) TCGA-EB-A431-01 3 132071618 132071618 C T ACPP Missense_Mutation p.L307F 0.30 tolerated(0.11) benign(0.347) TCGA-EB-A431-01 3 134084701 134084701 G A AMOTL2 Nonsense_Mutation p.Q413* 0.30 TCGA-EB-A431-01 3 134226074 134226074 C T CEP63 Silent p.I56I 0.16 TCGA-EB-A431-01 3 136221611 136221611 G A STAG1 Silent p.L229L 0.22 TCGA-EB-A431-01 3 136729059 136729059 C T IL20RB Silent p.I310I 0.29 TCGA-EB-A431-01 3 137483998 137483998 A C SOX14 Missense_Mutation p.K124N 0.21 tolerated(0.09) possibly_damaging(0.636) TCGA-EB-A431-01 3 13916465 13916465 A G WNT7A Missense_Mutation p.F93L 0.17 deleterious(0.03) possibly_damaging(0.85) TCGA-EB-A431-01 3 141289854 141289854 C T RASA2 Missense_Mutation p.P322S 0.27 tolerated(0.31) benign(0.07) TCGA-EB-A431-01 3 142123791 142123791 G A XRN1 Missense_Mutation p.P614L 0.15 tolerated(0.08) benign(0.017) TCGA-EB-A431-01 3 14958792 14958792 G A FGD5 Missense_Mutation p.D1148N 0.19 deleterious(0.05) probably_damaging(0.909) TCGA-EB-A431-01 3 150917098 150917098 G A GPR171 Missense_Mutation p.L26F 0.24 deleterious(0.01) possibly_damaging(0.866) TCGA-EB-A431-01 3 151155591 151155591 C T IGSF10 Missense_Mutation p.R2253K 0.37 tolerated(0.29) benign(0.303) TCGA-EB-A431-01 3 151598351 151598351 G A SUCNR1 Nonsense_Mutation p.W7* 0.35 TCGA-EB-A431-01 3 158261980 158261980 C T RSRC1 Silent p.I307I 0.35 TCGA-EB-A431-01 3 158422641 158422641 C T RARRES1 Nonsense_Mutation p.W204* 0.11 TCGA-EB-A431-01 3 159707958 159707958 C T IL12A Silent p.L41L 0.36 TCGA-EB-A431-01 3 161221247 161221247 G A OTOL1 Silent p.G317G 0.36 TCGA-EB-A431-01 3 164907323 164907323 A C SLITRK3 Silent p.S432S 0.21 TCGA-EB-A431-01 3 167245757 167245757 G C WDR49 Missense_Mutation p.L467V 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A431-01 3 167246952 167246952 G A WDR49 Missense_Mutation p.A413V 0.18 deleterious(0) possibly_damaging(0.863) TCGA-EB-A431-01 3 168833622 168833622 C T MECOM Missense_Mutation p.G557R 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 169664110 169664110 A G RP11-379K17.4 RNA 0.14 TCGA-EB-A431-01 3 172533400 172533400 C T ECT2 Missense_Mutation p.L803F 0.16 tolerated(0.51) probably_damaging(0.999) TCGA-EB-A431-01 3 172607438 172607438 G A SPATA16 Silent p.F544F 0.28 TCGA-EB-A431-01 3 172766857 172766857 C T SPATA16 Missense_Mutation p.E214K 0.17 tolerated(1) possibly_damaging(0.486) TCGA-EB-A431-01 3 179605524 179605524 C T PEX5L Missense_Mutation p.D83N 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A431-01 3 182554145 182554145 C T ATP11B Nonsense_Mutation p.R147* 0.21 TCGA-EB-A431-01 3 183097128 183097128 C T MCF2L2 Missense_Mutation p.E78K 0.24 tolerated(0.26) benign(0.199) TCGA-EB-A431-01 3 183493851 183493851 C T YEATS2 Silent p.G839G 0.26 TCGA-EB-A431-01 3 183898381 183898381 C T AP2M1 Intron 0.27 TCGA-EB-A431-01 3 184049273 184049273 C T EIF4G1 Missense_Mutation p.T1432I 0.24 tolerated(0.12) benign(0.065) TCGA-EB-A431-01 3 185167835 185167835 G A MAP3K13 Missense_Mutation p.M386I 0.19 tolerated(0.08) possibly_damaging(0.475) TCGA-EB-A431-01 3 186256605 186256605 G A CRYGS Silent p.F139F 0.43 TCGA-EB-A431-01 3 186917510 186917510 G A RTP1 Silent p.E148E 0.42 TCGA-EB-A431-01 3 192992935 192992935 C T ATP13A5 Missense_Mutation p.G1185R 0.21 tolerated(0.5) benign(0.033) TCGA-EB-A431-01 3 193166058 193166058 C T ATP13A4 Missense_Mutation p.E697K 0.10 tolerated(0.96) benign(0.006) TCGA-EB-A431-01 3 193177001 193177001 A G ATP13A4 Missense_Mutation p.F515L 0.21 tolerated(0.17) benign(0.022) TCGA-EB-A431-01 3 194373795 194373795 G A LSG1 Missense_Mutation p.S279F 0.27 tolerated(0.05) benign(0.001) TCGA-EB-A431-01 3 195594499 195594499 G A TNK2 Silent p.F953F 0.23 TCGA-EB-A431-01 3 197009702 197009702 A T DLG1 Missense_Mutation p.Y56N 0.19 deleterious(0) probably_damaging(0.991) TCGA-EB-A431-01 3 197401903 197401903 G A KIAA0226 Silent p.L969L 0.15 TCGA-EB-A431-01 3 25665134 25665134 G A TOP2B Missense_Mutation p.P862S 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 27161293 27161293 G A NEK10 Missense_Mutation p.R1107C 0.15 deleterious(0.03) benign(0.311) TCGA-EB-A431-01 3 27326381 27326381 C T NEK10 Missense_Mutation p.E621K 0.54 tolerated(0.05) benign(0.16) TCGA-EB-A431-01 3 27758942 27758942 G A EOMES Silent p.A560A 0.23 TCGA-EB-A431-01 3 2928890 2928890 G A CNTN4 Missense_Mutation p.G308R 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 3072591 3072591 G A CNTN4 Missense_Mutation p.G572E 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 30875362 30875362 G A GADL1 Missense_Mutation p.L345F 0.51 deleterious(0.04) probably_damaging(0.97) TCGA-EB-A431-01 3 31871659 31871659 G A OSBPL10 Missense_Mutation p.S201F 0.27 deleterious(0.05) benign(0.26) TCGA-EB-A431-01 3 33602313 33602313 G A CLASP2 Missense_Mutation p.L981F 0.27 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 3 35725539 35725539 G A ARPP21 Intron 0.21 TCGA-EB-A431-01 3 36780251 36780251 G A DCLK3 5'UTR 0.38 TCGA-EB-A431-01 3 36897004 36897004 G A TRANK1 Silent p.S1359S 0.22 TCGA-EB-A431-01 3 36897663 36897663 G A TRANK1 Missense_Mutation p.P1140S 0.25 tolerated(0.45) benign(0.034) TCGA-EB-A431-01 3 38592933 38592933 G A SCN5A Missense_Mutation p.R1644C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 3 38651333 38651333 G A SCN5A Silent p.L276L 0.26 TCGA-EB-A431-01 3 38739944 38739944 C T SCN10A Silent p.A1589A 0.29 TCGA-EB-A431-01 3 38812792 38812792 C T SCN10A Missense_Mutation p.D193N 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 39184682 39184682 G A CSRNP1 Missense_Mutation p.P545L 0.24 deleterious(0.02) possibly_damaging(0.568) TCGA-EB-A431-01 3 39226565 39226565 G A XIRP1 Missense_Mutation p.P1458S 0.45 tolerated(0.44) benign(0.008) TCGA-EB-A431-01 3 39228789 39228789 G A XIRP1 Silent p.I716I 0.34 TCGA-EB-A431-01 3 39307287 39307287 G A CX3CR1 Silent p.I270I 0.55 TCGA-EB-A431-01 3 39307305 39307305 C T CX3CR1 Silent p.L264L 0.24 TCGA-EB-A431-01 3 39374607 39374607 C T CCR8 Missense_Mutation p.S262F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A431-01 3 401995 401995 C T CHL1 Silent p.F398F 0.21 TCGA-EB-A431-01 3 40231720 40231720 G A MYRIP Silent p.R477R 0.51 TCGA-EB-A431-01 3 40433670 40433670 G A ENTPD3 Intron 0.40 TCGA-EB-A431-01 3 42906179 42906179 G A ACKR2 Missense_Mutation p.S62N 0.54 deleterious(0.02) benign(0.03) TCGA-EB-A431-01 3 43640067 43640067 G A ANO10 Silent p.I143I 0.22 TCGA-EB-A431-01 3 44986686 44986686 G A ZDHHC3 Silent p.I135I 0.29 TCGA-EB-A431-01 3 45776851 45776851 C T SACM1L Nonsense_Mutation p.Q409* 0.21 TCGA-EB-A431-01 3 46245202 46245202 C T CCR1 Silent p.L201L 0.33 TCGA-EB-A431-01 3 4703923 4703923 G T ITPR1 Missense_Mutation p.R455M 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A431-01 3 47632182 47632182 G A SMARCC1 Silent p.P1063P 0.24 TCGA-EB-A431-01 3 48612238 48612238 C T COL7A1 Missense_Mutation p.G2114S 0.12 unknown(0) TCGA-EB-A431-01 3 48684312 48684312 G A CELSR3 Silent p.V2393V 0.25 TCGA-EB-A431-01 3 49548002 49548002 C T DAG1 Missense_Mutation p.P12L 0.40 tolerated_low_confidence(0.51) probably_damaging(0.987) TCGA-EB-A431-01 3 49662653 49662653 C T BSN Missense_Mutation p.S157F 0.21 unknown(0) TCGA-EB-A431-01 3 49680548 49680548 A G BSN Missense_Mutation p.N494S 0.21 unknown(0) TCGA-EB-A431-01 3 49698762 49698762 G A BSN Missense_Mutation p.E3162K 0.46 unknown(0) TCGA-EB-A431-01 3 49699339 49699339 C T BSN Missense_Mutation p.S3354F 0.30 unknown(0) TCGA-EB-A431-01 3 49700806 49700806 G A BSN Missense_Mutation p.A3739T 0.26 unknown(0) TCGA-EB-A431-01 3 49939861 49939861 G A MST1R Silent p.L394L 0.22 TCGA-EB-A431-01 3 50405653 50405653 C T CACNA2D2 Missense_Mutation p.D694N 0.42 tolerated(0.1) benign(0.023) TCGA-EB-A431-01 3 50405654 50405654 C T CACNA2D2 Silent p.K693K 0.43 TCGA-EB-A431-01 3 52027712 52027712 G A RPL29 3'UTR 0.30 TCGA-EB-A431-01 3 52360859 52360859 C T DNAH1 Silent p.T230T 0.17 TCGA-EB-A431-01 3 52412615 52412615 C T DNAH1 Intron 0.12 TCGA-EB-A431-01 3 52549467 52549467 G A STAB1 Missense_Mutation p.R1298Q 0.27 deleterious(0.04) benign(0.023) TCGA-EB-A431-01 3 52554978 52554978 G A STAB1 Nonsense_Mutation p.W1955* 0.45 TCGA-EB-A431-01 3 52562081 52562081 G A NT5DC2 Silent p.I260I 0.17 TCGA-EB-A431-01 3 52833931 52833931 A T ITIH3 Nonsense_Mutation p.K357* 0.13 TCGA-EB-A431-01 3 52839834 52839834 G A ITIH3 Silent p.V628V 0.27 TCGA-EB-A431-01 3 52940138 52940138 G A SFMBT1 Silent p.F817F 0.25 TCGA-EB-A431-01 3 53779852 53779852 G A CACNA1D Silent p.G1059G 0.50 TCGA-EB-A431-01 3 54958874 54958874 C T LRTM1 Missense_Mutation p.E126K 0.34 tolerated(0.18) benign(0.023) TCGA-EB-A431-01 3 56173566 56173566 C T ERC2 Missense_Mutation p.E482K 0.22 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 3 56468960 56468960 G A ERC2 Missense_Mutation p.R26C 0.26 deleterious(0) probably_damaging(0.988) TCGA-EB-A431-01 3 58109091 58109091 C T FLNB Missense_Mutation p.P1133L 0.25 deleterious(0.04) benign(0.257) TCGA-EB-A431-01 3 58154266 58154266 A G FLNB Missense_Mutation p.E2464G 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 3 58552407 58552407 C T FAM107A Missense_Mutation p.E115K 0.20 tolerated(0.29) benign(0.025) TCGA-EB-A431-01 3 62317022 62317022 C T C3orf14 Missense_Mutation p.S67L 0.31 tolerated(0.13) possibly_damaging(0.616) TCGA-EB-A431-01 3 64627611 64627611 G A ADAMTS9 Missense_Mutation p.S590F 0.40 deleterious(0.01) possibly_damaging(0.701) TCGA-EB-A431-01 3 68587923 68587923 G A FAM19A1 Silent p.G92G 0.20 TCGA-EB-A431-01 3 7188272 7188272 G A GRM7 Nonsense_Mutation p.W218* 0.20 TCGA-EB-A431-01 3 72427589 72427589 G A RYBP Missense_Mutation p.R301C 0.37 deleterious(0) probably_damaging(0.942) TCGA-EB-A431-01 3 73453413 73453413 G A PDZRN3 Missense_Mutation p.S351F 0.28 tolerated(0.3) benign(0.057) TCGA-EB-A431-01 3 77623762 77623762 G A ROBO2 Missense_Mutation p.R711Q 0.41 tolerated(0.35) possibly_damaging(0.602) TCGA-EB-A431-01 3 86010722 86010722 G A CADM2 Missense_Mutation p.D292N 0.23 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 3 86996099 86996099 G A VGLL3 3'UTR 0.30 TCGA-EB-A431-01 3 8787362 8787362 G A CAV3 Missense_Mutation p.G89S 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 3 97887590 97887590 G A OR5H15 Missense_Mutation p.G16E 0.15 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 3 98189371 98189371 G A OR5K1 3'UTR 0.18 TCGA-EB-A431-01 3 99513167 99513167 G A COL8A1 Missense_Mutation p.G141E 0.14 deleterious(0.01) unknown(0) TCGA-EB-A431-01 3 99513430 99513430 G A COL8A1 Missense_Mutation p.G229R 0.19 deleterious(0) unknown(0) TCGA-EB-A431-01 3 99513807 99513807 C T COL8A1 Silent p.G354G 0.53 TCGA-EB-A431-01 3 99513808 99513808 T A COL8A1 Missense_Mutation p.F355I 0.53 tolerated(0.23) unknown(0) TCGA-EB-A431-01 4 100062792 100062792 G A ADH4 Silent p.I54I 0.28 TCGA-EB-A431-01 4 100201349 100201349 G A ADH1A Missense_Mutation p.P306S 0.33 deleterious(0.04) probably_damaging(0.937) TCGA-EB-A431-01 4 102984267 102984267 G A BANK1 Silent p.G728G 0.44 TCGA-EB-A431-01 4 103590153 103590153 G A MANBA Silent p.F428F 0.27 TCGA-EB-A431-01 4 107845334 107845334 G A DKK2 Missense_Mutation p.S186L 0.20 deleterious(0) probably_damaging(0.966) TCGA-EB-A431-01 4 108816622 108816622 C T SGMS2 5'UTR 0.40 TCGA-EB-A431-01 4 109782128 109782128 C T COL25A1 Splice_Site p.X400_splice 0.22 TCGA-EB-A431-01 4 111441454 111441454 G A ENPEP Silent p.K553K 0.30 TCGA-EB-A431-01 4 114274757 114274757 G A ANK2 Silent p.K1661K 0.22 TCGA-EB-A431-01 4 119064768 119064768 C T NDST3 Missense_Mutation p.P490S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 4 119951203 119951203 G A SYNPO2 Missense_Mutation p.E425K 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A431-01 4 119952886 119952886 G A SYNPO2 Missense_Mutation p.D986N 0.37 tolerated(0.13) possibly_damaging(0.697) TCGA-EB-A431-01 4 120528233 120528233 G A PDE5A Silent p.F124F 0.52 TCGA-EB-A431-01 4 123664681 123664681 T C BBS12 Missense_Mutation p.L545S 0.35 deleterious(0) probably_damaging(0.978) TCGA-EB-A431-01 4 1244316 1244316 G A CTBP1 5'Flank 0.16 TCGA-EB-A431-01 4 125631632 125631632 A G ANKRD50 Missense_Mutation p.M12T 0.33 tolerated_low_confidence(0.14) possibly_damaging(0.775) TCGA-EB-A431-01 4 126240420 126240420 C T FAT4 Missense_Mutation p.L952F 0.29 benign(0.361) TCGA-EB-A431-01 4 126411587 126411587 C T FAT4 Missense_Mutation p.P4537L 0.32 benign(0.355) TCGA-EB-A431-01 4 1388279 1388279 C T CRIPAK 5'UTR 0.32 TCGA-EB-A431-01 4 140810583 140810583 G A MAML3 Silent p.R669R 0.27 TCGA-EB-A431-01 4 147561695 147561695 G A POU4F2 Nonsense_Mutation p.W322* 0.29 TCGA-EB-A431-01 4 149075789 149075789 C T NR3C2 Missense_Mutation p.D760N 0.37 deleterious(0) possibly_damaging(0.842) TCGA-EB-A431-01 4 15067977 15067977 A T CPEB2 Silent p.P1026P 0.54 TCGA-EB-A431-01 4 151124995 151124995 C T DCLK2 Missense_Mutation p.S354F 0.18 tolerated(0.1) probably_damaging(0.967) TCGA-EB-A431-01 4 151170731 151170731 C T DCLK2 Silent p.S673S 0.30 TCGA-EB-A431-01 4 151604815 151604815 G A LRBA Missense_Mutation p.H1937Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 4 151827063 151827063 C T LRBA Missense_Mutation p.G561E 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 153573855 153573855 G T TMEM154 Missense_Mutation p.L97I 0.24 tolerated(0.58) benign(0.021) TCGA-EB-A431-01 4 153864408 153864408 C T FHDC1 Missense_Mutation p.P67S 0.42 deleterious(0.05) probably_damaging(0.992) TCGA-EB-A431-01 4 153896066 153896066 C T FHDC1 Silent p.L541L 0.46 TCGA-EB-A431-01 4 154271221 154271221 G A MND1 Silent p.K3K 0.23 TCGA-EB-A431-01 4 154626295 154626295 C T TLR2 Missense_Mutation p.P746S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 162306998 162306998 C T FSTL5 Silent p.K815K 0.28 TCGA-EB-A431-01 4 166924661 166924661 G A TLL1 Missense_Mutation p.E251K 0.19 deleterious(0.02) probably_damaging(0.963) TCGA-EB-A431-01 4 169105801 169105801 G A ANXA10 Missense_Mutation p.R292Q 0.26 tolerated(0.55) benign(0.058) TCGA-EB-A431-01 4 169158913 169158913 A T DDX60 Missense_Mutation p.F1400I 0.21 deleterious(0) possibly_damaging(0.764) TCGA-EB-A431-01 4 177098264 177098264 G A WDR17 Missense_Mutation p.E1208K 0.23 tolerated(0.25) probably_damaging(0.989) TCGA-EB-A431-01 4 17805166 17805166 G T DCAF16 Missense_Mutation p.S200Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-EB-A431-01 4 183664489 183664489 C T TENM3 Silent p.I1182I 0.13 TCGA-EB-A431-01 4 186544089 186544089 C T SORBS2 Missense_Mutation p.D928N 0.36 tolerated(0.06) possibly_damaging(0.854) TCGA-EB-A431-01 4 186570649 186570649 G A SORBS2 Nonsense_Mutation p.R281* 0.12 TCGA-EB-A431-01 4 187004080 187004080 C T TLR3 Silent p.L414L 0.36 TCGA-EB-A431-01 4 187196998 187196998 C T F11 Silent p.L181L 0.38 TCGA-EB-A431-01 4 188924424 188924424 G A ZFP42 Missense_Mutation p.G155R 0.36 deleterious(0.02) probably_damaging(0.925) TCGA-EB-A431-01 4 189022389 189022389 A T TRIML2 Missense_Mutation p.F51I 0.36 tolerated(0.08) possibly_damaging(0.606) TCGA-EB-A431-01 4 20620695 20620695 T G SLIT2 3'UTR 0.53 TCGA-EB-A431-01 4 2087431 2087431 C T POLN Silent p.Q702Q 0.18 TCGA-EB-A431-01 4 2272490 2272490 G A ZFYVE28 Missense_Mutation p.H876Y 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 22749428 22749428 G A GBA3 Missense_Mutation p.E266K 0.41 deleterious(0.03) benign(0.028) TCGA-EB-A431-01 4 2306220 2306220 G A ZFYVE28 Missense_Mutation p.P616L 0.33 tolerated_low_confidence(0.05) benign(0.008) TCGA-EB-A431-01 4 25026467 25026467 G A LGI2 Missense_Mutation p.R130C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 4 25777909 25777909 C T SEL1L3 Missense_Mutation p.E887K 0.46 tolerated(0.14) benign(0.298) TCGA-EB-A431-01 4 27004568 27004568 G A STIM2 Missense_Mutation p.E275K 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-EB-A431-01 4 3495251 3495251 G A DOK7 3'UTR 0.42 TCGA-EB-A431-01 4 38691476 38691476 C T KLF3 Missense_Mutation p.S224F 0.47 tolerated(0.06) benign(0.332) TCGA-EB-A431-01 4 40778120 40778120 G A NSUN7 Missense_Mutation p.D294N 0.21 deleterious(0.02) probably_damaging(0.933) TCGA-EB-A431-01 4 41600975 41600975 C T LIMCH1 Silent p.L92L 0.14 TCGA-EB-A431-01 4 42965087 42965087 G A GRXCR1 Missense_Mutation p.R188Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 4 46305627 46305627 C T GABRA2 Missense_Mutation p.E236K 0.18 deleterious(0.01) benign(0.219) TCGA-EB-A431-01 4 47593093 47593093 C T ATP10D Missense_Mutation p.P1326S 0.18 tolerated(0.05) possibly_damaging(0.831) TCGA-EB-A431-01 4 48136182 48136182 G A TXK Silent p.I2I 0.19 TCGA-EB-A431-01 4 49032923 49032923 A T CWH43 Missense_Mutation p.E485V 0.22 deleterious(0) probably_damaging(0.988) TCGA-EB-A431-01 4 5018646 5018646 G A CYTL1 Missense_Mutation p.P82S 0.31 tolerated(0.61) benign(0) TCGA-EB-A431-01 4 52861599 52861599 C T LRRC66 Missense_Mutation p.R530K 0.29 tolerated(0.39) benign(0.017) TCGA-EB-A431-01 4 55138563 55138563 C T PDGFRA Missense_Mutation p.P414S 0.19 deleterious(0.03) benign(0.164) TCGA-EB-A431-01 4 55970916 55970916 C T KDR Missense_Mutation p.M627I 0.29 deleterious(0.02) benign(0.002) TCGA-EB-A431-01 4 57181943 57181943 C T KIAA1211 Missense_Mutation p.P759S 0.55 tolerated(0.18) possibly_damaging(0.803) TCGA-EB-A431-01 4 57839469 57839469 G A NOA1 Missense_Mutation p.P454S 0.21 tolerated(0.66) benign(0.071) TCGA-EB-A431-01 4 5966815 5966815 G A C4orf50 Missense_Mutation p.S646L 0.49 deleterious(0.04) possibly_damaging(0.797) TCGA-EB-A431-01 4 62542648 62542648 C T LPHN3 Missense_Mutation p.P125L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 4 62599194 62599194 G A LPHN3 Missense_Mutation p.D373N 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 654278 654278 C T PDE6B Missense_Mutation p.T497I 0.43 tolerated(0.06) benign(0.001) TCGA-EB-A431-01 4 657980 657980 C T PDE6B Missense_Mutation p.S700F 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A431-01 4 68459045 68459045 C T STAP1 Missense_Mutation p.P266L 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 6863241 6863241 C T KIAA0232 Missense_Mutation p.P378S 0.23 tolerated(0.37) benign(0.004) TCGA-EB-A431-01 4 69179937 69179937 G A YTHDC1 Silent p.D688D 0.25 TCGA-EB-A431-01 4 69693229 69693229 C T UGT2B10 Silent p.L424L 0.30 TCGA-EB-A431-01 4 69811088 69811088 G A UGT2A3 Missense_Mutation p.P267L 0.21 deleterious(0.01) probably_damaging(1) TCGA-EB-A431-01 4 70066197 70066197 C T UGT2B11 Nonsense_Mutation p.W517* 0.38 TCGA-EB-A431-01 4 70146908 70146908 G A UGT2B28 Silent p.K230K 0.23 TCGA-EB-A431-01 4 70359494 70359494 C T UGT2B4 Missense_Mutation p.D263N 0.48 tolerated(0.06) benign(0.118) TCGA-EB-A431-01 4 71347381 71347381 C T MUC7 Missense_Mutation p.P307L 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A431-01 4 71465272 71465272 G A AMBN Missense_Mutation p.G68E 0.46 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 4 71522180 71522180 C T IGJ Missense_Mutation p.E116K 0.28 deleterious(0.01) benign(0.015) TCGA-EB-A431-01 4 72222858 72222858 G A SLC4A4 Silent p.G228G 0.24 TCGA-EB-A431-01 4 72306417 72306417 C T SLC4A4 Missense_Mutation p.P298S 0.19 deleterious(0.02) probably_damaging(0.967) TCGA-EB-A431-01 4 74274316 74274316 C T ALB Silent p.T92T 0.11 TCGA-EB-A431-01 4 74282008 74282008 G A ALB Silent p.Q409Q 0.26 TCGA-EB-A431-01 4 75937858 75937858 G A PARM1 Silent p.E89E 0.19 TCGA-EB-A431-01 4 76797776 76797776 C T PPEF2 Missense_Mutation p.M328I 0.26 tolerated(0.26) benign(0.02) TCGA-EB-A431-01 4 78085662 78085662 C T CCNG2 Intron 0.16 TCGA-EB-A431-01 4 8038002 8038002 G A ABLIM2 Silent p.I307I 0.22 TCGA-EB-A431-01 4 8082418 8082418 G A ABLIM2 Missense_Mutation p.A189V 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 4 81866016 81866016 C T C4orf22 Nonsense_Mutation p.Q194* 0.09 TCGA-EB-A431-01 4 82348843 82348843 G A RASGEF1B 3'UTR 0.47 TCGA-EB-A431-01 4 85742573 85742573 A G WDFY3 Missense_Mutation p.F419L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 4 8621162 8621162 C T CPZ Missense_Mutation p.H593Y 0.52 tolerated(1) benign(0.017) TCGA-EB-A431-01 4 88534073 88534073 T G DSPP Missense_Mutation p.S245R 0.29 probably_damaging(0.987) TCGA-EB-A431-01 4 9785072 9785072 G A DRD5 Silent p.P473P 0.67 TCGA-EB-A431-01 5 108672937 108672937 G A PJA2 Missense_Mutation p.P708S 0.16 deleterious_low_confidence(0) unknown(0) TCGA-EB-A431-01 5 108691661 108691661 G A PJA2 Silent p.F573F 0.44 TCGA-EB-A431-01 5 10973513 10973513 C T CTNND2 3'UTR 0.65 TCGA-EB-A431-01 5 110409110 110409110 C T TSLP Intron 0.20 TCGA-EB-A431-01 5 110835658 110835658 G A STARD4 Missense_Mutation p.P182S 0.22 deleterious(0) probably_damaging(0.983) TCGA-EB-A431-01 5 114473274 114473274 A T TRIM36 Missense_Mutation p.F303I 0.32 tolerated(0.88) probably_damaging(0.997) TCGA-EB-A431-01 5 118525493 118525493 C A DMXL1 Missense_Mutation p.S2409Y 0.26 deleterious(0.02) benign(0.035) TCGA-EB-A431-01 5 1239656 1239656 T C SLC6A18 Missense_Mutation p.F275S 0.17 deleterious(0) probably_damaging(0.984) TCGA-EB-A431-01 5 127728915 127728915 G A FBN2 Missense_Mutation p.P460S 0.38 tolerated(0.12) benign(0.16) TCGA-EB-A431-01 5 130778182 130778182 G A RAPGEF6 Missense_Mutation p.S1165F 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A431-01 5 131915751 131915751 C T RAD50 Missense_Mutation p.P250L 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 5 134102706 134102706 C T DDX46 Silent p.S102S 0.14 TCGA-EB-A431-01 5 135583257 135583257 G A TRPC7 Silent p.F582F 0.17 TCGA-EB-A431-01 5 135651434 135651434 C T TRPC7 Missense_Mutation p.D272N 0.42 deleterious(0.03) benign(0.062) TCGA-EB-A431-01 5 136974685 136974685 G A KLHL3 Silent p.L392L 0.16 TCGA-EB-A431-01 5 13714589 13714589 C T DNAH5 Silent p.E4350E 0.24 TCGA-EB-A431-01 5 13766229 13766229 G A DNAH5 Silent p.I3319I 0.18 TCGA-EB-A431-01 5 137665301 137665301 A C CDC25C Missense_Mutation p.L77R 0.48 deleterious(0) possibly_damaging(0.793) TCGA-EB-A431-01 5 137681138 137681138 C T FAM53C Missense_Mutation p.S254F 0.18 deleterious(0) probably_damaging(0.919) TCGA-EB-A431-01 5 13769176 13769176 C T DNAH5 Missense_Mutation p.D3264N 0.39 possibly_damaging(0.822) TCGA-EB-A431-01 5 13830279 13830279 G A DNAH5 Silent p.N2035N 0.27 TCGA-EB-A431-01 5 13886106 13886106 C T DNAH5 Missense_Mutation p.E904K 0.33 benign(0.092) TCGA-EB-A431-01 5 13919390 13919390 C T DNAH5 Nonsense_Mutation p.W290* 0.16 TCGA-EB-A431-01 5 13922221 13922221 C T DNAH5 Missense_Mutation p.E219K 0.47 benign(0.292) TCGA-EB-A431-01 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.19 possibly_damaging(0.555) TCGA-EB-A431-01 5 140166278 140166278 G A PCDHA1 Missense_Mutation p.G135S 0.20 tolerated_low_confidence(0.43) benign(0.001) TCGA-EB-A431-01 5 140167390 140167390 G A PCDHA1 Silent p.S505S 0.23 TCGA-EB-A431-01 5 140167698 140167698 C T PCDHA1 Missense_Mutation p.S608F 0.29 tolerated_low_confidence(0.08) probably_damaging(0.975) TCGA-EB-A431-01 5 140182649 140182649 C T PCDHA3 Missense_Mutation p.R623C 0.33 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-EB-A431-01 5 140187497 140187497 T C PCDHA4 Missense_Mutation p.F242S 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A431-01 5 140188900 140188900 C A PCDHA4 Missense_Mutation p.L710I 0.26 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EB-A431-01 5 140221922 140221922 G A PCDHA8 Missense_Mutation p.R339K 0.16 tolerated_low_confidence(0.37) benign(0) TCGA-EB-A431-01 5 140229903 140229903 C T PCDHA9 Missense_Mutation p.S608L 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-EB-A431-01 5 140249718 140249718 G A PCDHA11 Missense_Mutation p.D344N 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A431-01 5 140348652 140348652 G C PCDHAC2 Missense_Mutation p.R767S 0.42 tolerated(0.09) benign(0.218) TCGA-EB-A431-01 5 140431764 140431764 G A PCDHB1 Missense_Mutation p.D237N 0.28 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 5 140481595 140481595 C T PCDHB3 Silent p.I454I 0.18 TCGA-EB-A431-01 5 140530082 140530082 G T PCDHB6 Missense_Mutation p.D82Y 0.19 deleterious(0) benign(0.43) TCGA-EB-A431-01 5 140531943 140531943 C T PCDHB6 Missense_Mutation p.S702L 0.27 deleterious_low_confidence(0) benign(0.209) TCGA-EB-A431-01 5 140557814 140557814 G A PCDHB8 Missense_Mutation p.V67I 0.29 tolerated_low_confidence(0.58) benign(0.139) TCGA-EB-A431-01 5 140558185 140558185 G A PCDHB8 Silent p.R190R 0.12 TCGA-EB-A431-01 5 140559171 140559171 C T PCDHB8 Missense_Mutation p.S519L 0.10 deleterious_low_confidence(0) benign(0.276) TCGA-EB-A431-01 5 140574249 140574249 C T PCDHB10 Silent p.L708L 0.32 TCGA-EB-A431-01 5 140580245 140580245 G A PCDHB11 Missense_Mutation p.E300K 0.51 deleterious_low_confidence(0.01) benign(0.101) TCGA-EB-A431-01 5 140724476 140724476 C T PCDHGA3 Silent p.F292F 0.30 TCGA-EB-A431-01 5 140736223 140736223 C T PCDHGA4 Nonsense_Mutation p.R486* 0.25 TCGA-EB-A431-01 5 140742014 140742014 C T PCDHGB2 Missense_Mutation p.T771I 0.25 deleterious(0.01) benign(0.062) TCGA-EB-A431-01 5 140751055 140751055 C T PCDHGB3 Missense_Mutation p.A365V 0.29 tolerated(1) benign(0.001) TCGA-EB-A431-01 5 140811165 140811165 C T PCDHGA12 Missense_Mutation p.S280F 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.517) TCGA-EB-A431-01 5 1409191 1409191 G A SLC6A3 Missense_Mutation p.S483F 0.17 deleterious(0) probably_damaging(0.992) TCGA-EB-A431-01 5 141059772 141059772 G A ARAP3 Silent p.P94P 0.14 TCGA-EB-A431-01 5 141248739 141248739 G A PCDH1 Missense_Mutation p.R100C 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 5 141304153 141304153 C T KIAA0141 Silent p.P13P 0.19 TCGA-EB-A431-01 5 142264914 142264914 G A ARHGAP26 Missense_Mutation p.E146K 0.26 deleterious(0) possibly_damaging(0.621) TCGA-EB-A431-01 5 14487582 14487582 C T TRIO Missense_Mutation p.S2282L 0.55 benign(0.001) TCGA-EB-A431-01 5 145393604 145393604 C T SH3RF2 Missense_Mutation p.P347S 0.23 tolerated(0.47) benign(0.035) TCGA-EB-A431-01 5 145862239 145862239 C T TCERG1 Silent p.V657V 0.25 TCGA-EB-A431-01 5 14610487 14610487 T C FAM105A 3'UTR 0.18 TCGA-EB-A431-01 5 146773588 146773588 G A DPYSL3 3'UTR 0.20 TCGA-EB-A431-01 5 147281206 147281206 G A C5orf46 Silent p.S67S 0.18 TCGA-EB-A431-01 5 149216604 149216604 C T PPARGC1B Silent p.H862H 0.45 TCGA-EB-A431-01 5 149457785 149457785 G A CSF1R Silent p.L207L 0.21 TCGA-EB-A431-01 5 149677329 149677329 C T ARSI Silent p.T386T 0.41 TCGA-EB-A431-01 5 149772279 149772279 C T TCOF1 Missense_Mutation p.P1176S 0.13 deleterious(0.05) possibly_damaging(0.55) TCGA-EB-A431-01 5 153026503 153026503 C T GRIA1 Missense_Mutation p.S89F 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 5 153190634 153190634 C T GRIA1 Missense_Mutation p.S867L 0.42 deleterious_low_confidence(0.01) benign(0.075) TCGA-EB-A431-01 5 154395794 154395794 C T KIF4B Missense_Mutation p.P792L 0.46 deleterious(0.03) possibly_damaging(0.806) TCGA-EB-A431-01 5 155490 155490 G A PLEKHG4B Missense_Mutation p.E358K 0.20 tolerated(0.28) benign(0.285) TCGA-EB-A431-01 5 156479423 156479423 C T HAVCR1 Missense_Mutation p.V208I 0.13 tolerated(0.28) unknown(0) TCGA-EB-A431-01 5 156590190 156590190 C T FAM71B Silent p.G362G 0.20 TCGA-EB-A431-01 5 156592780 156592780 C T FAM71B Missense_Mutation p.D134N 0.22 tolerated(0.3) benign(0.08) TCGA-EB-A431-01 5 156655310 156655310 G A ITK Missense_Mutation p.E218K 0.38 deleterious(0.05) possibly_damaging(0.474) TCGA-EB-A431-01 5 156671278 156671278 C T ITK Silent p.L413L 0.19 TCGA-EB-A431-01 5 156899960 156899960 C T NIPAL4 Missense_Mutation p.H465Y 0.22 tolerated_low_confidence(0.29) benign(0.002) TCGA-EB-A431-01 5 156924024 156924024 G A ADAM19 Missense_Mutation p.S491F 0.19 deleterious(0) probably_damaging(0.979) TCGA-EB-A431-01 5 162900236 162900236 C T HMMR Silent p.L234L 0.57 TCGA-EB-A431-01 5 167671462 167671462 G A TENM2 Missense_Mutation p.R1853Q 0.24 tolerated(0.21) probably_damaging(0.998) TCGA-EB-A431-01 5 167674779 167674779 G A TENM2 Missense_Mutation p.E2279K 0.54 tolerated(0.07) possibly_damaging(0.522) TCGA-EB-A431-01 5 168180053 168180053 C T SLIT3 Missense_Mutation p.G627D 0.38 deleterious(0.04) probably_damaging(0.995) TCGA-EB-A431-01 5 168222545 168222545 C T SLIT3 Missense_Mutation p.G325E 0.17 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 5 169673169 169673169 G A C5orf58 3'UTR 0.24 TCGA-EB-A431-01 5 170345741 170345741 C T RANBP17 Missense_Mutation p.H327Y 0.31 deleterious(0.03) benign(0.001) TCGA-EB-A431-01 5 172341787 172341787 C T ERGIC1 Silent p.I107I 0.34 TCGA-EB-A431-01 5 172745154 172745154 C T STC2 Missense_Mutation p.G202E 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 5 17354212 17354212 C T CTD-2139B15.2 Intron 0.16 TCGA-EB-A431-01 5 175992320 175992320 C T CDHR2 Intron 0.18 TCGA-EB-A431-01 5 176395857 176395857 A G UIMC1 Missense_Mutation p.L300S 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 5 176409486 176409486 G A UIMC1 Missense_Mutation p.S44F 0.22 deleterious(0) probably_damaging(0.985) TCGA-EB-A431-01 5 178392768 178392768 C T ZNF454 Missense_Mutation p.L455F 0.16 deleterious(0) probably_damaging(0.993) TCGA-EB-A431-01 5 178417606 178417606 C T GRM6 Silent p.R333R 0.39 TCGA-EB-A431-01 5 180050984 180050984 G A FLT4 Missense_Mutation p.P500L 0.22 tolerated(0.08) possibly_damaging(0.678) TCGA-EB-A431-01 5 180326198 180326198 C T BTNL8 5'UTR 0.22 TCGA-EB-A431-01 5 180326199 180326199 C T BTNL8 5'UTR 0.23 TCGA-EB-A431-01 5 26988453 26988453 C T CDH9 5'UTR 0.16 TCGA-EB-A431-01 5 32230004 32230004 G A MTMR12 Silent p.F708F 0.60 TCGA-EB-A431-01 5 33624432 33624432 C T ADAMTS12 Missense_Mutation p.D683N 0.17 tolerated(0.22) benign(0.025) TCGA-EB-A431-01 5 33881254 33881254 C T ADAMTS12 Silent p.G153G 0.34 TCGA-EB-A431-01 5 35003948 35003948 G A AGXT2 Missense_Mutation p.P453S 0.68 tolerated(0.18) benign(0.009) TCGA-EB-A431-01 5 35070273 35070273 C T PRLR Missense_Mutation p.G213E 0.22 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 5 35070274 35070274 C T PRLR Missense_Mutation p.G213R 0.20 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 5 3599623 3599623 G A IRX1 Silent p.K187K 0.45 TCGA-EB-A431-01 5 36035744 36035744 C T UGT3A2 3'UTR 0.28 TCGA-EB-A431-01 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.57 TCGA-EB-A431-01 5 36301446 36301446 C T RANBP3L Missense_Mutation p.E25K 0.55 tolerated(0.18) benign(0.011) TCGA-EB-A431-01 5 36629616 36629616 C T SLC1A3 Silent p.S82S 0.22 TCGA-EB-A431-01 5 38338860 38338860 C T EGFLAM Missense_Mutation p.L90F 0.20 deleterious_low_confidence(0.03) benign(0.098) TCGA-EB-A431-01 5 38482239 38482239 G A LIFR Missense_Mutation p.P918S 0.18 tolerated(0.36) benign(0.069) TCGA-EB-A431-01 5 38486081 38486081 A G LIFR Silent p.G779G 0.10 TCGA-EB-A431-01 5 39315915 39315915 C T C9 Missense_Mutation p.E278K 0.26 tolerated(0.24) benign(0.05) TCGA-EB-A431-01 5 39390658 39390658 G A DAB2 Missense_Mutation p.P117L 0.10 deleterious(0.04) possibly_damaging(0.513) TCGA-EB-A431-01 5 41015530 41015530 T A MROH2B Missense_Mutation p.S979C 0.63 tolerated(0.1) benign(0.007) TCGA-EB-A431-01 5 41019020 41019020 C T MROH2B Missense_Mutation p.E848K 0.58 tolerated(0.25) benign(0.041) TCGA-EB-A431-01 5 41186276 41186276 C T C6 Missense_Mutation p.V208I 0.17 tolerated(0.1) benign(0.055) TCGA-EB-A431-01 5 41201694 41201694 G A C6 Missense_Mutation p.P89L 0.71 deleterious(0.04) possibly_damaging(0.828) TCGA-EB-A431-01 5 41911244 41911244 G A C5orf51 Missense_Mutation p.R150K 0.29 tolerated(1) benign(0.001) TCGA-EB-A431-01 5 5186282 5186282 C T ADAMTS16 Missense_Mutation p.T294I 0.50 deleterious(0.04) probably_damaging(0.941) TCGA-EB-A431-01 5 5186283 5186283 C T ADAMTS16 Silent p.T294T 0.49 TCGA-EB-A431-01 5 53814535 53814535 C T SNX18 Silent p.F251F 0.35 TCGA-EB-A431-01 5 54416363 54416363 G A CDC20B Missense_Mutation p.P411S 0.16 deleterious(0) probably_damaging(0.973) TCGA-EB-A431-01 5 55250661 55250661 G A IL6ST Missense_Mutation p.T476I 0.20 tolerated(0.07) benign(0.005) TCGA-EB-A431-01 5 56527021 56527021 C T GPBP1 Missense_Mutation p.S102F 0.45 tolerated(0.52) possibly_damaging(0.632) TCGA-EB-A431-01 5 63256910 63256910 C T HTR1A Missense_Mutation p.V213I 0.44 tolerated(0.47) probably_damaging(0.912) TCGA-EB-A431-01 5 64314198 64314198 C T CWC27 3'UTR 0.70 TCGA-EB-A431-01 5 65349290 65349290 C T ERBB2IP Missense_Mutation p.S715L 0.27 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A431-01 5 66441132 66441132 C T MAST4 Missense_Mutation p.P1007S 0.15 benign(0.015) TCGA-EB-A431-01 5 66441133 66441133 C T MAST4 Missense_Mutation p.P1007L 0.15 benign(0.008) TCGA-EB-A431-01 5 70247828 70247828 C T SMN1 Intron 0.12 TCGA-EB-A431-01 5 74097447 74097447 G A FAM169A Missense_Mutation p.S307F 0.26 deleterious(0.04) possibly_damaging(0.488) TCGA-EB-A431-01 5 75427623 75427623 G A SV2C Silent p.K16K 0.20 TCGA-EB-A431-01 5 75954357 75954357 C T IQGAP2 Silent p.F798F 0.34 TCGA-EB-A431-01 5 75993911 75993911 G A IQGAP2 Missense_Mutation p.E1436K 0.17 deleterious(0.05) benign(0.392) TCGA-EB-A431-01 5 76128895 76128895 T A F2RL1 Missense_Mutation p.F155I 0.22 deleterious(0) probably_damaging(0.991) TCGA-EB-A431-01 5 76173582 76173582 C T S100Z Silent p.F75F 0.32 TCGA-EB-A431-01 5 79465227 79465227 G A SERINC5 Silent p.L232L 0.25 TCGA-EB-A431-01 5 80640034 80640034 C T ACOT12 Missense_Mutation p.D309N 0.21 deleterious(0) possibly_damaging(0.883) TCGA-EB-A431-01 5 80640035 80640035 C T ACOT12 Splice_Site p.X309_splice 0.22 TCGA-EB-A431-01 5 81606007 81606007 C T ATP6AP1L Missense_Mutation p.P38S 0.23 tolerated(0.41) benign(0.067) TCGA-EB-A431-01 5 878596 878596 A T BRD9 Missense_Mutation p.F382Y 0.11 tolerated(0.85) benign(0.008) TCGA-EB-A431-01 5 90070088 90070088 C T GPR98 Missense_Mutation p.S4124L 0.18 possibly_damaging(0.587) TCGA-EB-A431-01 5 90083966 90083966 G A GPR98 Missense_Mutation p.G4578R 0.40 probably_damaging(0.996) TCGA-EB-A431-01 5 96058407 96058407 G A CAST Intron 0.28 TCGA-EB-A431-01 5 9629378 9629378 C T TAS2R1 Missense_Mutation p.R256K 0.17 tolerated(0.1) benign(0.065) TCGA-EB-A431-01 6 102069821 102069821 C T GRIK2 Intron 0.67 TCGA-EB-A431-01 6 102266332 102266332 C T GRIK2 Missense_Mutation p.R431C 0.40 deleterious(0.01) possibly_damaging(0.826) TCGA-EB-A431-01 6 106553132 106553132 G A PRDM1 Missense_Mutation p.G366D 0.36 tolerated(0.31) benign(0.082) TCGA-EB-A431-01 6 108768474 108768474 C T LACE1 Missense_Mutation p.P289S 0.57 tolerated(0.16) benign(0.009) TCGA-EB-A431-01 6 10898251 10898251 C T SYCP2L Missense_Mutation p.S115F 0.15 deleterious(0.03) benign(0.128) TCGA-EB-A431-01 6 10927502 10927502 G A SYCP2L Missense_Mutation p.E448K 0.18 tolerated(0.12) benign(0.055) TCGA-EB-A431-01 6 117244292 117244292 C T RFX6 Missense_Mutation p.S487L 0.49 deleterious(0.01) possibly_damaging(0.877) TCGA-EB-A431-01 6 117252545 117252545 G A RFX6 Missense_Mutation p.G888E 0.32 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EB-A431-01 6 12122404 12122404 C T HIVEP1 Silent p.F792F 0.13 TCGA-EB-A431-01 6 12125274 12125274 C T HIVEP1 Missense_Mutation p.S1749F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 6 125597203 125597203 G A HDDC2 3'UTR 0.56 TCGA-EB-A431-01 6 129381003 129381003 G A LAMA2 Missense_Mutation p.E120K 0.55 deleterious(0.03) benign(0.045) TCGA-EB-A431-01 6 130762616 130762616 C T TMEM200A Missense_Mutation p.S350F 0.38 deleterious(0.02) possibly_damaging(0.451) TCGA-EB-A431-01 6 133013533 133013533 G A VNN1 Silent p.F339F 0.57 TCGA-EB-A431-01 6 133013537 133013537 A T VNN1 Missense_Mutation p.F338Y 0.53 tolerated(1) probably_damaging(0.954) TCGA-EB-A431-01 6 134328036 134328036 C T SLC2A12 Missense_Mutation p.G494E 0.56 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 6 136599171 136599171 C T BCLAF1 Missense_Mutation p.R283Q 0.21 tolerated(0.17) benign(0.417) TCGA-EB-A431-01 6 139564373 139564373 C T TXLNB Missense_Mutation p.E449K 0.39 tolerated(0.11) possibly_damaging(0.904) TCGA-EB-A431-01 6 149691194 149691194 C T TAB2 Missense_Mutation p.P21S 0.48 deleterious(0.02) benign(0.292) TCGA-EB-A431-01 6 152560826 152560826 G A SYNE1 Silent p.L6637L 0.57 TCGA-EB-A431-01 6 153078278 153078278 G A VIP 3'UTR 0.42 TCGA-EB-A431-01 6 154439956 154439956 G A OPRM1 3'Flank 0.18 TCGA-EB-A431-01 6 154727573 154727573 G A CNKSR3 Missense_Mutation p.S528F 0.37 deleterious_low_confidence(0.02) benign(0.267) TCGA-EB-A431-01 6 157527315 157527315 C T ARID1B Silent p.L1680L 0.32 TCGA-EB-A431-01 6 158483096 158483096 G A SYNJ2 Missense_Mutation p.G343S 0.30 tolerated(0.09) possibly_damaging(0.579) TCGA-EB-A431-01 6 159029457 159029457 C T TMEM181 Missense_Mutation p.L393F 0.37 tolerated(0.06) probably_damaging(0.98) TCGA-EB-A431-01 6 159653655 159653655 G A FNDC1 Missense_Mutation p.G704E 0.54 tolerated_low_confidence(0.7) unknown(0) TCGA-EB-A431-01 6 160490958 160490958 C T IGF2R Silent p.L1437L 0.17 TCGA-EB-A431-01 6 160913840 160913840 G A LPAL2 RNA 0.26 TCGA-EB-A431-01 6 161012087 161012087 G A LPA Missense_Mutation p.P1226S 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A431-01 6 165703553 165703553 G A C6orf118 Missense_Mutation p.S375L 0.33 tolerated(0.1) benign(0.076) TCGA-EB-A431-01 6 166902340 166902340 C T RPS6KA2 Silent p.R304R 0.19 TCGA-EB-A431-01 6 166902341 166902341 C T RPS6KA2 Missense_Mutation p.R304Q 0.19 deleterious(0) probably_damaging(0.927) TCGA-EB-A431-01 6 167719447 167719447 G A UNC93A Silent p.V295V 0.47 TCGA-EB-A431-01 6 17637606 17637606 G A NUP153 Missense_Mutation p.P748S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A431-01 6 17779846 17779846 C T KIF13A Missense_Mutation p.E1306K 0.18 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 6 22569993 22569993 G A HDGFL1 Silent p.K63K 0.29 TCGA-EB-A431-01 6 24475459 24475459 C T GPLD1 Missense_Mutation p.D111N 0.23 tolerated(0.53) benign(0.094) TCGA-EB-A431-01 6 25689736 25689736 G A SCGN Silent p.E203E 0.19 TCGA-EB-A431-01 6 25868580 25868580 C T SLC17A3 Silent p.R12R 0.28 TCGA-EB-A431-01 6 25926068 25926068 C T SLC17A2 5'UTR 0.22 TCGA-EB-A431-01 6 27216925 27216925 C T PRSS16 Silent p.S128S 0.39 TCGA-EB-A431-01 6 27879792 27879792 G A OR2B2 Silent p.F102F 0.45 TCGA-EB-A431-01 6 27879911 27879911 G A OR2B2 Missense_Mutation p.L63F 0.12 deleterious(0) probably_damaging(0.974) TCGA-EB-A431-01 6 28227403 28227403 C A NKAPL Missense_Mutation p.S85Y 0.19 tolerated(0.09) unknown(0) TCGA-EB-A431-01 6 28327654 28327654 C T ZKSCAN3 Silent p.I97I 0.12 TCGA-EB-A431-01 6 28474096 28474096 C T GPX6 Missense_Mutation p.G118S 0.14 tolerated(0.77) possibly_damaging(0.861) TCGA-EB-A431-01 6 28963254 28963254 G A ZNF311 Nonsense_Mutation p.Q509* 0.15 TCGA-EB-A431-01 6 29275232 29275232 G A OR14J1 Missense_Mutation p.E256K 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-EB-A431-01 6 29275257 29275257 C T OR14J1 Missense_Mutation p.S264F 0.37 deleterious(0.03) benign(0.17) TCGA-EB-A431-01 6 29342195 29342195 G A OR12D3 Silent p.T290T 0.33 TCGA-EB-A431-01 6 29407902 29407902 C T OR10C1 Missense_Mutation p.T37I 0.42 tolerated(0.71) benign(0.018) TCGA-EB-A431-01 6 3006773 3006773 C T NQO2 5'UTR 0.41 TCGA-EB-A431-01 6 30114962 30114962 G A TRIM40 Silent p.K185K 0.39 TCGA-EB-A431-01 6 30114963 30114963 G A TRIM40 Missense_Mutation p.E186K 0.39 tolerated(0.47) benign(0.01) TCGA-EB-A431-01 6 30671610 30671610 G A MDC1 Missense_Mutation p.H1784Y 0.17 deleterious(0.01) benign(0.006) TCGA-EB-A431-01 6 30883591 30883591 C T VARS2 Silent p.S181S 0.44 TCGA-EB-A431-01 6 31097351 31097351 G A PSORS1C1 5'UTR 0.37 TCGA-EB-A431-01 6 31541065 31541065 C T LTA Silent p.P71P 0.40 TCGA-EB-A431-01 6 31612751 31612751 G A BAG6 Silent p.P453P 0.19 TCGA-EB-A431-01 6 31612752 31612752 G A BAG6 Missense_Mutation p.P453L 0.19 deleterious(0) probably_damaging(0.994) TCGA-EB-A431-01 6 31922210 31922210 G A NELFE Missense_Mutation p.S251L 0.38 deleterious(0.01) benign(0.184) TCGA-EB-A431-01 6 31922212 31922212 A T NELFE Missense_Mutation p.D250E 0.37 deleterious(0.04) unknown(0) TCGA-EB-A431-01 6 32166241 32166241 C T NOTCH4 Silent p.Q1571Q 0.39 TCGA-EB-A431-01 6 32166772 32166772 C T NOTCH4 Missense_Mutation p.R1489Q 0.37 tolerated(0.23) benign(0.025) TCGA-EB-A431-01 6 32187927 32187927 C T NOTCH4 Missense_Mutation p.D432N 0.38 tolerated(0.83) probably_damaging(1) TCGA-EB-A431-01 6 32188758 32188758 G A NOTCH4 Missense_Mutation p.P266S 0.29 tolerated(0.1) benign(0.035) TCGA-EB-A431-01 6 32713022 32713022 G A HLA-DQA2 Missense_Mutation p.E57K 0.15 tolerated(0.06) benign(0.226) TCGA-EB-A431-01 6 32974467 32974467 A T HLA-DOA 3'UTR 0.42 TCGA-EB-A431-01 6 33134523 33134523 C T COL11A2 Missense_Mutation p.G1352S 0.17 unknown(0) TCGA-EB-A431-01 6 33136303 33136303 C T COL11A2 Missense_Mutation p.G1232E 0.16 unknown(0) TCGA-EB-A431-01 6 33140318 33140318 C T COL11A2 Missense_Mutation p.E877K 0.41 possibly_damaging(0.486) TCGA-EB-A431-01 6 33143390 33143390 C T COL11A2 Silent p.P693P 0.19 TCGA-EB-A431-01 6 33163700 33163700 G A RXRB Silent p.V369V 0.44 TCGA-EB-A431-01 6 33368154 33368154 C T KIFC1 Intron 0.36 TCGA-EB-A431-01 6 33374114 33374114 C T KIFC1 Missense_Mutation p.P560S 0.16 tolerated(0.09) benign(0.014) TCGA-EB-A431-01 6 36168431 36168431 C T BRPF3 Missense_Mutation p.S111F 0.12 deleterious(0.01) possibly_damaging(0.83) TCGA-EB-A431-01 6 36172462 36172462 C T BRPF3 Silent p.S492S 0.11 TCGA-EB-A431-01 6 36298439 36298439 G A C6orf222 Missense_Mutation p.P10L 0.20 deleterious(0.05) probably_damaging(0.958) TCGA-EB-A431-01 6 36766013 36766013 G A CPNE5 Silent p.F111F 0.27 TCGA-EB-A431-01 6 37618032 37618032 C T MDGA1 Missense_Mutation p.G488R 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A431-01 6 38690955 38690955 G A DNAH8 5'UTR 0.46 TCGA-EB-A431-01 6 38906695 38906695 C T DNAH8 Missense_Mutation p.L3763F 0.30 possibly_damaging(0.606) TCGA-EB-A431-01 6 39513431 39513431 G A KIF6 Silent p.D405D 0.17 TCGA-EB-A431-01 6 39851782 39851782 G T DAAM2 Missense_Mutation p.Q630H 0.25 deleterious(0) possibly_damaging(0.54) TCGA-EB-A431-01 6 401555 401555 C T IRF4 Missense_Mutation p.P293S 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 6 4099425 4099425 G A C6orf201 Missense_Mutation p.V93I 0.18 tolerated(0.22) probably_damaging(0.971) TCGA-EB-A431-01 6 41162470 41162470 G A TREML2 Missense_Mutation p.P160S 0.14 tolerated(0.08) benign(0.346) TCGA-EB-A431-01 6 4130909 4130909 G A C6orf201 3'UTR 0.12 TCGA-EB-A431-01 6 41712210 41712210 T G PGC Missense_Mutation p.N85H 0.13 deleterious(0.01) benign(0.153) TCGA-EB-A431-01 6 43128550 43128550 C T PTK7 Silent p.P1056P 0.28 TCGA-EB-A431-01 6 43266381 43266381 G A SLC22A7 Silent p.G95G 0.21 TCGA-EB-A431-01 6 43266382 43266382 G A SLC22A7 Missense_Mutation p.E96K 0.21 tolerated(0.91) benign(0.018) TCGA-EB-A431-01 6 43266471 43266471 C T SLC22A7 Silent p.S125S 0.14 TCGA-EB-A431-01 6 43538391 43538391 G A XPO5 Missense_Mutation p.L157F 0.15 tolerated(0.14) probably_damaging(0.98) TCGA-EB-A431-01 6 44197193 44197193 C T SLC29A1 Silent p.F32F 0.46 TCGA-EB-A431-01 6 46658108 46658108 A T TDRD6 Missense_Mutation p.Y748F 0.26 tolerated(0.66) benign(0.009) TCGA-EB-A431-01 6 46830690 46830690 G A GPR116 Nonsense_Mutation p.Q712* 0.24 TCGA-EB-A431-01 6 47253976 47253976 G A TNFRSF21 Missense_Mutation p.P151L 0.21 deleterious(0.03) benign(0.222) TCGA-EB-A431-01 6 47846162 47846162 G A PTCHD4 Silent p.F806F 0.23 TCGA-EB-A431-01 6 49666204 49666204 C T CRISP2 Silent p.E96E 0.26 TCGA-EB-A431-01 6 49754407 49754407 G A PGK2 Missense_Mutation p.A165V 0.22 deleterious(0) probably_damaging(0.976) TCGA-EB-A431-01 6 51768809 51768809 C T PKHD1 Nonsense_Mutation p.W2280* 0.22 TCGA-EB-A431-01 6 52870054 52870054 A T ICK Missense_Mutation p.F598I 0.38 tolerated(0.18) benign(0.266) TCGA-EB-A431-01 6 53785517 53785517 C T LRRC1 Silent p.I458I 0.34 TCGA-EB-A431-01 6 5545545 5545545 C T FARS2 Missense_Mutation p.S346F 0.35 deleterious(0.04) benign(0.002) TCGA-EB-A431-01 6 6182295 6182295 C A F13A1 Missense_Mutation p.G462V 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 6 70064163 70064163 G T BAI3 Missense_Mutation p.Q1166H 0.43 deleterious(0.03) possibly_damaging(0.453) TCGA-EB-A431-01 6 70733538 70733538 G A COL19A1 Missense_Mutation p.G349E 0.29 deleterious(0.02) unknown(0) TCGA-EB-A431-01 6 71012663 71012663 C T COL9A1 5'UTR 0.37 TCGA-EB-A431-01 6 7229776 7229776 C T RREB1 Missense_Mutation p.P482S 0.21 tolerated(0.12) possibly_damaging(0.486) TCGA-EB-A431-01 6 7230906 7230906 C T RREB1 Silent p.P858P 0.35 TCGA-EB-A431-01 6 73100387 73100387 C T RIMS1 Missense_Mutation p.P1485L 0.42 deleterious(0) probably_damaging(0.914) TCGA-EB-A431-01 6 7404246 7404246 C T RIOK1 Silent p.I280I 0.17 TCGA-EB-A431-01 6 7581130 7581130 G A DSP Silent p.Q1569Q 0.43 TCGA-EB-A431-01 6 7880648 7880648 G A BMP6 3'UTR 0.13 TCGA-EB-A431-01 6 8430148 8430148 G A SLC35B3 Silent p.F82F 0.19 TCGA-EB-A431-01 6 88854010 88854010 C T CNR1 Silent p.Q328Q 0.48 TCGA-EB-A431-01 6 96651324 96651324 C T FUT9 Missense_Mutation p.S98L 0.42 tolerated(0.16) benign(0.101) TCGA-EB-A431-01 7 100085872 100085872 C T NYAP1 Silent p.F176F 0.41 TCGA-EB-A431-01 7 100252710 100252710 C T ACTL6B Missense_Mutation p.D101N 0.54 tolerated(0.13) benign(0.062) TCGA-EB-A431-01 7 100346083 100346083 C T ZAN Silent p.F413F 0.40 TCGA-EB-A431-01 7 100388730 100388730 C T ZAN Silent p.F2507F 0.19 TCGA-EB-A431-01 7 100551957 100551957 C A MUC3A Silent p.S236S 0.18 TCGA-EB-A431-01 7 100678489 100678489 A G MUC17 Silent p.E1264E 0.18 TCGA-EB-A431-01 7 100679360 100679360 C T MUC17 Missense_Mutation p.P1555S 0.24 unknown(0) TCGA-EB-A431-01 7 100679883 100679883 C T MUC17 Missense_Mutation p.S1729L 0.35 probably_damaging(0.972) TCGA-EB-A431-01 7 100839176 100839176 G A MOGAT3 3'UTR 0.39 TCGA-EB-A431-01 7 101844896 101844896 C T CUX1 Silent p.A784A 0.19 TCGA-EB-A431-01 7 103629587 103629587 C T RELN Missense_Mutation p.E73K 0.14 deleterious(0.03) benign(0.376) TCGA-EB-A431-01 7 103824604 103824604 G A ORC5 Missense_Mutation p.P234S 0.33 tolerated(0.82) benign(0.001) TCGA-EB-A431-01 7 105669022 105669022 C T CDHR3 Silent p.V766V 0.36 TCGA-EB-A431-01 7 107315441 107315441 C T SLC26A4 Missense_Mutation p.P218S 0.21 tolerated(0.48) probably_damaging(1) TCGA-EB-A431-01 7 107430113 107430113 C T SLC26A3 Silent p.R197R 0.25 TCGA-EB-A431-01 7 107689770 107689770 C T LAMB4 Splice_Site p.X1374_splice 0.36 TCGA-EB-A431-01 7 107832251 107832251 C T NRCAM Missense_Mutation p.D609N 0.35 tolerated(0.28) benign(0.003) TCGA-EB-A431-01 7 111368641 111368641 C T DOCK4 Missense_Mutation p.G1864S 0.14 tolerated_low_confidence(0.65) possibly_damaging(0.462) TCGA-EB-A431-01 7 111540581 111540581 G A DOCK4 Silent p.S443S 0.35 TCGA-EB-A431-01 7 113519829 113519829 C T PPP1R3A Missense_Mutation p.D440N 0.39 tolerated(0.15) benign(0.128) TCGA-EB-A431-01 7 114284856 114284856 A C FOXP2 Intron 0.29 TCGA-EB-A431-01 7 11521455 11521455 C T THSD7A Silent p.Q659Q 0.27 TCGA-EB-A431-01 7 11676374 11676374 C T THSD7A Silent p.V135V 0.24 TCGA-EB-A431-01 7 117304772 117304772 C T CFTR Missense_Mutation p.P1332S 0.34 tolerated(0.08) possibly_damaging(0.714) TCGA-EB-A431-01 7 120979052 120979052 G A WNT16 Missense_Mutation p.D251N 0.19 tolerated(0.09) benign(0.008) TCGA-EB-A431-01 7 120991240 120991240 A T FAM3C Missense_Mutation p.F184Y 0.32 deleterious(0) probably_damaging(0.96) TCGA-EB-A431-01 7 121636504 121636504 G A PTPRZ1 Missense_Mutation p.E333K 0.36 deleterious(0) possibly_damaging(0.801) TCGA-EB-A431-01 7 123267166 123267166 G A ASB15 Missense_Mutation p.G234S 0.42 tolerated(0.19) benign(0.377) TCGA-EB-A431-01 7 127973380 127973380 G A RBM28 Missense_Mutation p.P328L 0.15 deleterious(0) benign(0.412) TCGA-EB-A431-01 7 128491562 128491562 G A FLNC Missense_Mutation p.D1908N 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 7 128645159 128645159 G A TNPO3 Missense_Mutation p.R203C 0.34 deleterious(0) benign(0.15) TCGA-EB-A431-01 7 130368455 130368455 C T TSGA13 Missense_Mutation p.G27R 0.31 tolerated(0.37) probably_damaging(0.979) TCGA-EB-A431-01 7 131815153 131815153 G A PLXNA4 3'UTR 0.44 TCGA-EB-A431-01 7 131832678 131832678 C T PLXNA4 Silent p.R1615R 0.23 TCGA-EB-A431-01 7 131866946 131866946 T A PLXNA4 Silent p.G1054G 0.41 TCGA-EB-A431-01 7 132193153 132193153 G A PLXNA4 Silent p.I100I 0.32 TCGA-EB-A431-01 7 139797366 139797366 G A KDM7A Silent p.S665S 0.47 TCGA-EB-A431-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EB-A431-01 7 141301038 141301038 C A AGK Silent p.A85A 0.20 TCGA-EB-A431-01 7 141536960 141536960 C T PRSS37 Silent p.R173R 0.14 TCGA-EB-A431-01 7 141672566 141672566 C T TAS2R38 Silent p.V308V 0.46 TCGA-EB-A431-01 7 141755813 141755813 C T MGAM Missense_Mutation p.S1166F 0.24 tolerated(0.29) possibly_damaging(0.62) TCGA-EB-A431-01 7 142028429 142028429 C T TRBV6-1 Nonsense_Mutation p.R55* 0.34 TCGA-EB-A431-01 7 142162381 142162381 G A TRBV6-6 5'UTR 0.33 TCGA-EB-A431-01 7 14216493 14216493 C T DGKB Missense_Mutation p.G760R 0.22 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 7 142326802 142326802 G A TRBV19 Missense_Mutation p.E34K 0.38 tolerated(0.09) possibly_damaging(0.768) TCGA-EB-A431-01 7 142334740 142334740 G A TRBV20-1 Silent p.P54P 0.37 TCGA-EB-A431-01 7 142378838 142378838 A C MTRNR2L6 3'Flank 0.40 TCGA-EB-A431-01 7 142458485 142458485 C T PRSS1 Silent p.S40S 0.06 TCGA-EB-A431-01 7 142479988 142479988 C T PRSS3P2 RNA 0.25 TCGA-EB-A431-01 7 142499027 142499027 G A TRBC2 Missense_Mutation p.G102R 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A431-01 7 142566006 142566006 G A EPHB6 Silent p.V642V 0.20 TCGA-EB-A431-01 7 142575001 142575001 G A TRPV6 Silent p.N127N 0.16 TCGA-EB-A431-01 7 142639603 142639603 C T KEL Missense_Mutation p.R652K 0.58 tolerated(1) benign(0.158) TCGA-EB-A431-01 7 142880922 142880922 G A TAS2R39 Silent p.V137V 0.38 TCGA-EB-A431-01 7 142919854 142919854 G A TAS2R40 Missense_Mutation p.G228E 0.21 tolerated(1) benign(0.002) TCGA-EB-A431-01 7 143175703 143175703 C T TAS2R41 Silent p.S246S 0.16 TCGA-EB-A431-01 7 143657606 143657606 C T OR2F1 Silent p.L181L 0.34 TCGA-EB-A431-01 7 143657981 143657981 G A OR2F1 Nonsense_Mutation p.W306* 0.33 TCGA-EB-A431-01 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.16 deleterious(0.03) benign(0.003) TCGA-EB-A431-01 7 143956539 143956539 G A OR2A7 Silent p.F61F 0.18 TCGA-EB-A431-01 7 144062304 144062304 C T ARHGEF5 Missense_Mutation p.P848S 0.08 tolerated(0.54) benign(0.003) TCGA-EB-A431-01 7 148106497 148106497 C T CNTNAP2 Missense_Mutation p.P1244S 0.15 tolerated(0.66) benign(0.003) TCGA-EB-A431-01 7 148903910 148903910 C T ZNF282 Silent p.S236S 0.19 TCGA-EB-A431-01 7 149152511 149152511 G A ZNF777 Silent p.A201A 0.43 TCGA-EB-A431-01 7 149417945 149417945 C T KRBA1 Silent p.S58S 0.25 TCGA-EB-A431-01 7 149418604 149418604 C A KRBA1 Silent p.V148V 0.32 TCGA-EB-A431-01 7 149497433 149497433 C T SSPO RNA 0.18 TCGA-EB-A431-01 7 150440140 150440140 C T GIMAP5 Missense_Mutation p.H305Y 0.42 tolerated_low_confidence(0.61) benign(0.035) TCGA-EB-A431-01 7 150749305 150749305 G A ASIC3 Missense_Mutation p.R480K 0.20 tolerated(0.49) benign(0.02) TCGA-EB-A431-01 7 151372603 151372603 G A PRKAG2 Missense_Mutation p.S196F 0.45 deleterious(0) possibly_damaging(0.713) TCGA-EB-A431-01 7 151866309 151866309 G A KMT2C Missense_Mutation p.S3160F 0.45 probably_damaging(0.998) TCGA-EB-A431-01 7 18801781 18801781 G A HDAC9 Missense_Mutation p.R682Q 0.34 tolerated(0.23) probably_damaging(0.979) TCGA-EB-A431-01 7 2949728 2949728 G A CARD11 Silent p.I1072I 0.49 TCGA-EB-A431-01 7 3681621 3681621 G A SDK1 Silent p.R199R 0.28 TCGA-EB-A431-01 7 37298869 37298869 G A ELMO1 Silent p.L110L 0.36 TCGA-EB-A431-01 7 38431577 38431577 G A AMPH Silent p.N550N 0.30 TCGA-EB-A431-01 7 38466582 38466582 G A AMPH Missense_Mutation p.S396F 0.17 deleterious(0.01) possibly_damaging(0.738) TCGA-EB-A431-01 7 38530661 38530661 G A AMPH Missense_Mutation p.P129S 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 7 42065859 42065859 G A GLI3 Missense_Mutation p.P394L 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-EB-A431-01 7 42065860 42065860 G T GLI3 Missense_Mutation p.P394T 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-EB-A431-01 7 43484526 43484526 G A HECW1 Silent p.A585A 0.24 TCGA-EB-A431-01 7 44042272 44042272 G A SPDYE1 Missense_Mutation p.E115K 0.33 tolerated(0.28) benign(0.284) TCGA-EB-A431-01 7 44056033 44056033 G A POLR2J4 Intron 0.25 TCGA-EB-A431-01 7 44298504 44298504 G A CAMK2B Missense_Mutation p.S81F 0.09 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-EB-A431-01 7 48313031 48313031 C T ABCA13 Silent p.S1256S 0.32 TCGA-EB-A431-01 7 48313032 48313032 C T ABCA13 Missense_Mutation p.L1257F 0.35 benign(0.022) TCGA-EB-A431-01 7 48467395 48467395 G A ABCA13 Silent p.K4164K 0.11 TCGA-EB-A431-01 7 5104868 5104868 C T RBAK Missense_Mutation p.P594L 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 7 51096303 51096303 C T COBL Silent p.G830G 0.34 TCGA-EB-A431-01 7 5410522 5410522 G A TNRC18 Missense_Mutation p.R1235W 0.29 benign(0.112) TCGA-EB-A431-01 7 54617801 54617801 G A VSTM2A Missense_Mutation p.R191Q 0.20 tolerated(0.12) benign(0.003) TCGA-EB-A431-01 7 55220290 55220290 C T EGFR Missense_Mutation p.S227F 0.38 tolerated(0.65) possibly_damaging(0.502) TCGA-EB-A431-01 7 55238344 55238344 C T EGFR Intron 0.47 TCGA-EB-A431-01 7 55248936 55248936 C T EGFR Intron 0.20 TCGA-EB-A431-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.22 TCGA-EB-A431-01 7 6042189 6042189 G C PMS2 Missense_Mutation p.I144M 0.23 tolerated(0.07) benign(0.358) TCGA-EB-A431-01 7 64646884 64646884 T C INTS4L1 RNA 0.12 TCGA-EB-A431-01 7 65159994 65159994 A T INTS4L2 RNA 0.29 TCGA-EB-A431-01 7 6797395 6797395 C T RSPH10B2 Silent p.S29S 0.23 TCGA-EB-A431-01 7 70597897 70597897 G A WBSCR17 Missense_Mutation p.D37N 0.15 deleterious_low_confidence(0.03) benign(0.035) TCGA-EB-A431-01 7 70853249 70853249 C T WBSCR17 Silent p.L151L 0.14 TCGA-EB-A431-01 7 71134991 71134991 G A WBSCR17 Missense_Mutation p.R434K 0.35 deleterious(0.03) possibly_damaging(0.899) TCGA-EB-A431-01 7 72922787 72922787 A C BAZ1B Missense_Mutation p.F80C 0.18 deleterious(0) probably_damaging(0.99) TCGA-EB-A431-01 7 73021965 73021965 C T MLXIPL Silent p.V146V 0.21 TCGA-EB-A431-01 7 73280029 73280029 C T WBSCR28 Silent p.T208T 0.30 TCGA-EB-A431-01 7 73459563 73459563 C T ELN Missense_Mutation p.P161S 0.14 unknown(0) TCGA-EB-A431-01 7 74565198 74565198 C T GTF2IRD2B 3'UTR 0.18 TCGA-EB-A431-01 7 7480456 7480456 C T COL28A1 Missense_Mutation p.G563R 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 7 7530240 7530240 C T COL28A1 Missense_Mutation p.G355E 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 7 76026867 76026867 C T SRCRB4D Missense_Mutation p.G279D 0.61 deleterious(0.02) possibly_damaging(0.539) TCGA-EB-A431-01 7 8125855 8125855 C T GLCCI1 Missense_Mutation p.S444L 0.22 tolerated(0.25) probably_damaging(0.962) TCGA-EB-A431-01 7 82475947 82475947 G A PCLO Silent p.D4589D 0.40 TCGA-EB-A431-01 7 83023623 83023623 G A SEMA3E Missense_Mutation p.S497F 0.40 deleterious(0) probably_damaging(0.986) TCGA-EB-A431-01 7 83643665 83643665 G A SEMA3A Missense_Mutation p.P224S 0.46 deleterious(0) probably_damaging(0.991) TCGA-EB-A431-01 7 87399966 87399966 T G RUNDC3B Silent p.T250T 0.32 TCGA-EB-A431-01 7 87780584 87780584 G A ADAM22 Missense_Mutation p.G544R 0.25 deleterious(0.01) possibly_damaging(0.48) TCGA-EB-A431-01 7 87913477 87913477 C T STEAP4 Silent p.L36L 0.36 TCGA-EB-A431-01 7 87913481 87913481 C T STEAP4 Missense_Mutation p.G35E 0.16 deleterious(0) probably_damaging(0.969) TCGA-EB-A431-01 7 88965751 88965751 C T ZNF804B Missense_Mutation p.P1152L 0.39 deleterious(0) probably_damaging(0.952) TCGA-EB-A431-01 7 89915686 89915686 C T C7orf63 Silent p.G543G 0.31 TCGA-EB-A431-01 7 91674419 91674419 C T AKAP9 Missense_Mutation p.L1754F 0.19 probably_damaging(0.948) TCGA-EB-A431-01 7 91690648 91690648 C T AKAP9 Silent p.S1892S 0.30 TCGA-EB-A431-01 7 92085780 92085780 C T GATAD1 Silent p.P238P 0.42 TCGA-EB-A431-01 7 92244552 92244552 G A CDK6 Silent p.L295L 0.18 TCGA-EB-A431-01 7 92732660 92732660 G A SAMD9 Silent p.L917L 0.25 TCGA-EB-A431-01 7 92734705 92734705 G A SAMD9 Missense_Mutation p.H236Y 0.30 deleterious(0.01) benign(0.194) TCGA-EB-A431-01 7 92734891 92734891 G A SAMD9 Missense_Mutation p.R174C 0.27 deleterious(0.05) possibly_damaging(0.831) TCGA-EB-A431-01 7 92763562 92763562 C T SAMD9L Missense_Mutation p.E575K 0.30 tolerated(0.09) benign(0.209) TCGA-EB-A431-01 7 92764266 92764266 G A SAMD9L Missense_Mutation p.S340L 0.44 tolerated(0.1) benign(0.26) TCGA-EB-A431-01 7 93055585 93055585 G T CALCR 3'UTR 0.26 TCGA-EB-A431-01 7 94166830 94166830 C A CASD1 Missense_Mutation p.P297H 0.18 tolerated(0.56) probably_damaging(0.995) TCGA-EB-A431-01 7 94181669 94181669 C T CASD1 Missense_Mutation p.S655F 0.10 deleterious(0) probably_damaging(0.995) TCGA-EB-A431-01 7 95001533 95001533 C T PON3 Missense_Mutation p.D107N 0.14 tolerated(0.14) possibly_damaging(0.666) TCGA-EB-A431-01 7 96650194 96650194 G A DLX5 Missense_Mutation p.P242S 0.32 tolerated(0.25) probably_damaging(0.968) TCGA-EB-A431-01 7 97863118 97863118 G A TECPR1 Silent p.L429L 0.41 TCGA-EB-A431-01 7 98508732 98508732 C T TRRAP Silent p.I615I 0.41 TCGA-EB-A431-01 7 98946518 98946518 C T ARPC1A Missense_Mutation p.L146F 0.21 deleterious(0.03) benign(0.137) TCGA-EB-A431-01 7 99312187 99312187 C T CYP3A7 Silent p.E263E 0.34 TCGA-EB-A431-01 7 99312248 99312248 C T CYP3A7 Missense_Mutation p.R243K 0.17 tolerated(1) benign(0.001) TCGA-EB-A431-01 7 99332660 99332660 C T CYP3A7 Silent p.L19L 0.44 TCGA-EB-A431-01 7 99869515 99869515 G A GATS Missense_Mutation p.S31F 0.32 tolerated(0.26) benign(0.005) TCGA-EB-A431-01 7 99956512 99956512 C T PILRB Silent p.S88S 0.10 TCGA-EB-A431-01 8 100443865 100443865 G A VPS13B Nonsense_Mutation p.W1061* 0.21 TCGA-EB-A431-01 8 100443867 100443867 A T VPS13B Missense_Mutation p.N1062I 0.21 deleterious(0.01) benign(0.028) TCGA-EB-A431-01 8 100514036 100514036 C A VPS13B Missense_Mutation p.P1331H 0.16 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 8 102381832 102381832 G A NACAP1 RNA 0.12 TCGA-EB-A431-01 8 103358598 103358598 G A UBR5 Missense_Mutation p.S201F 0.15 deleterious(0) probably_damaging(0.977) TCGA-EB-A431-01 8 103573050 103573050 G A ODF1 Missense_Mutation p.D231N 0.16 tolerated_low_confidence(0.37) possibly_damaging(0.539) TCGA-EB-A431-01 8 10469098 10469098 G A RP1L1 Missense_Mutation p.A837V 0.47 benign(0.066) TCGA-EB-A431-01 8 10480590 10480590 C T RP1L1 Missense_Mutation p.R41Q 0.17 probably_damaging(0.988) TCGA-EB-A431-01 8 104922564 104922564 G A RIMS2 Intron 0.12 TCGA-EB-A431-01 8 10583504 10583504 G A SOX7 Missense_Mutation p.S356F 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A431-01 8 106814722 106814722 G A ZFPM2 Silent p.T804T 0.29 TCGA-EB-A431-01 8 106815070 106815070 G A ZFPM2 Silent p.G920G 0.13 TCGA-EB-A431-01 8 10756072 10756072 C T XKR6 Missense_Mutation p.R439Q 0.30 deleterious(0.02) benign(0.421) TCGA-EB-A431-01 8 10756377 10756377 G A XKR6 Silent p.S337S 0.20 TCGA-EB-A431-01 8 110099751 110099751 G A TRHR Missense_Mutation p.E4K 0.07 tolerated(0.91) benign(0.001) TCGA-EB-A431-01 8 110100064 110100064 G A TRHR Missense_Mutation p.G108E 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 8 110100426 110100426 G T TRHR Nonsense_Mutation p.E229* 0.24 TCGA-EB-A431-01 8 11172495 11172495 C T MTMR9 Silent p.S345S 0.29 TCGA-EB-A431-01 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.25 tolerated(0.46) benign(0.348) TCGA-EB-A431-01 8 11996051 11996051 C T USP17L2 Silent p.R73R 0.13 TCGA-EB-A431-01 8 121219213 121219213 G A COL14A1 Silent p.T357T 0.40 TCGA-EB-A431-01 8 121262927 121262927 G A COL14A1 Missense_Mutation p.G892R 0.24 deleterious(0) probably_damaging(0.985) TCGA-EB-A431-01 8 121262928 121262928 G A COL14A1 Missense_Mutation p.G892E 0.24 deleterious(0) probably_damaging(0.978) TCGA-EB-A431-01 8 121298204 121298204 C T COL14A1 Missense_Mutation p.H1358Y 0.40 deleterious(0) possibly_damaging(0.514) TCGA-EB-A431-01 8 121381620 121381620 G A COL14A1 Missense_Mutation p.G1736E 0.29 deleterious(0) possibly_damaging(0.798) TCGA-EB-A431-01 8 124993032 124993032 C T FER1L6 Missense_Mutation p.S464L 0.47 tolerated(0.1) benign(0.018) TCGA-EB-A431-01 8 125072843 125072843 C T FER1L6 Missense_Mutation p.R1014W 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 8 128428581 128428581 G A POU5F1B Missense_Mutation p.R157K 0.21 deleterious(0) probably_damaging(0.994) TCGA-EB-A431-01 8 131916182 131916182 C T ADCY8 Missense_Mutation p.E583K 0.16 tolerated(0.1) benign(0.414) TCGA-EB-A431-01 8 134225241 134225241 C T WISP1 Silent p.L68L 0.44 TCGA-EB-A431-01 8 135614561 135614561 G A ZFAT Silent p.F467F 0.26 TCGA-EB-A431-01 8 139149502 139149502 C T FAM135B Silent p.G1301G 0.23 TCGA-EB-A431-01 8 139158265 139158265 C T FAM135B Silent p.K1159K 0.20 TCGA-EB-A431-01 8 139158266 139158266 T C FAM135B Missense_Mutation p.K1159R 0.20 deleterious(0.04) possibly_damaging(0.533) TCGA-EB-A431-01 8 139165308 139165308 C T FAM135B Missense_Mutation p.M470I 0.40 tolerated(1) benign(0.001) TCGA-EB-A431-01 8 13947885 13947885 G A SGCZ 3'UTR 0.43 TCGA-EB-A431-01 8 139601619 139601619 C G COL22A1 Missense_Mutation p.E1586D 0.46 unknown(0) TCGA-EB-A431-01 8 139890060 139890060 G A COL22A1 Silent p.V197V 0.29 TCGA-EB-A431-01 8 14022128 14022128 C T SGCZ Missense_Mutation p.D170N 0.31 tolerated(0.54) benign(0.205) TCGA-EB-A431-01 8 140631221 140631221 G A KCNK9 Silent p.F135F 0.12 TCGA-EB-A431-01 8 142185496 142185496 C T DENND3 Silent p.L745L 0.19 TCGA-EB-A431-01 8 144297320 144297320 C T GPIHBP1 Missense_Mutation p.S161F 0.19 tolerated(0.21) benign(0.144) TCGA-EB-A431-01 8 144332051 144332051 C T ZFP41 Missense_Mutation p.T13I 0.36 tolerated(0.06) benign(0.024) TCGA-EB-A431-01 8 144645035 144645035 C T GSDMD Silent p.S472S 0.26 TCGA-EB-A431-01 8 144874996 144874996 G A SCRIB Silent p.S1353S 0.21 TCGA-EB-A431-01 8 144885708 144885708 G A SCRIB Missense_Mutation p.R1150W 0.44 probably_damaging(0.997) TCGA-EB-A431-01 8 144945495 144945495 G A EPPK1 Missense_Mutation p.L643F 0.31 probably_damaging(1) TCGA-EB-A431-01 8 145004365 145004365 G A PLEC Silent p.S990S 0.25 TCGA-EB-A431-01 8 145004366 145004366 G A PLEC Missense_Mutation p.S990F 0.25 unknown(0) TCGA-EB-A431-01 8 145019402 145019402 G A PLEC Intron 0.39 TCGA-EB-A431-01 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.25 deleterious(0) probably_damaging(0.973) TCGA-EB-A431-01 8 16850499 16850499 C T FGF20 3'UTR 0.50 TCGA-EB-A431-01 8 18257710 18257710 G A NAT2 Missense_Mutation p.G66E 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 8 18393341 18393341 G A PSD3 Missense_Mutation p.S1019F 0.12 deleterious(0) probably_damaging(0.969) TCGA-EB-A431-01 8 18622975 18622975 G A PSD3 Missense_Mutation p.S719F 0.24 deleterious(0) benign(0.351) TCGA-EB-A431-01 8 2020537 2020537 G A MYOM2 Silent p.L302L 0.23 TCGA-EB-A431-01 8 21984571 21984571 C T HR Missense_Mutation p.G462R 0.20 tolerated(0.43) benign(0.045) TCGA-EB-A431-01 8 22428684 22428684 C T SORBS3 Missense_Mutation p.R565C 0.21 tolerated(0.05) possibly_damaging(0.776) TCGA-EB-A431-01 8 24178886 24178886 G A ADAM28 Intron 0.69 TCGA-EB-A431-01 8 24810297 24810297 C T CTD-2168K21.2 5'Flank 0.32 TCGA-EB-A431-01 8 25132911 25132911 C T DOCK5 Missense_Mutation p.P60S 0.26 deleterious(0) probably_damaging(0.953) TCGA-EB-A431-01 8 26722416 26722416 G A ADRA1A Missense_Mutation p.S24F 0.20 tolerated(0.07) benign(0.004) TCGA-EB-A431-01 8 27097601 27097601 C T STMN4 Missense_Mutation p.E160K 0.50 tolerated(0.09) probably_damaging(0.923) TCGA-EB-A431-01 8 27888834 27888834 C T NUGGC Missense_Mutation p.E612K 0.20 tolerated(0.08) benign(0.025) TCGA-EB-A431-01 8 28321268 28321268 G A FBXO16 Missense_Mutation p.S68F 0.11 deleterious(0) possibly_damaging(0.62) TCGA-EB-A431-01 8 2965252 2965252 C T CSMD1 Missense_Mutation p.D2275N 0.38 possibly_damaging(0.756) TCGA-EB-A431-01 8 30705509 30705509 G A TEX15 Missense_Mutation p.P342L 0.52 tolerated(0.16) benign(0.058) TCGA-EB-A431-01 8 32453371 32453371 G A NRG1 Missense_Mutation p.M42I 0.16 tolerated(0.13) benign(0.016) TCGA-EB-A431-01 8 35541160 35541160 G A UNC5D Silent p.R222R 0.13 TCGA-EB-A431-01 8 35647928 35647928 C T UNC5D Silent p.N903N 0.45 TCGA-EB-A431-01 8 36671744 36671744 C T KCNU1 Missense_Mutation p.P251L 0.15 deleterious(0.01) possibly_damaging(0.712) TCGA-EB-A431-01 8 36673203 36673203 G A KCNU1 Silent p.K331K 0.34 TCGA-EB-A431-01 8 3889520 3889520 G A CSMD1 Missense_Mutation p.P173S 0.21 benign(0.001) TCGA-EB-A431-01 8 42050647 42050647 G A PLAT Silent p.F19F 0.18 TCGA-EB-A431-01 8 42302195 42302195 G A SLC20A2 Silent p.F233F 0.24 TCGA-EB-A431-01 8 42693393 42693393 T A THAP1 Missense_Mutation p.L118F 0.21 tolerated(0.66) benign(0.289) TCGA-EB-A431-01 8 43197399 43197399 G A POTEA RNA 0.27 TCGA-EB-A431-01 8 48736523 48736523 G A PRKDC Missense_Mutation p.R2939C 0.18 probably_damaging(0.969) TCGA-EB-A431-01 8 55533948 55533948 C T RP1 Missense_Mutation p.P141L 0.23 tolerated(0.29) benign(0.028) TCGA-EB-A431-01 8 55541928 55541928 C T RP1 Missense_Mutation p.P1829L 0.15 deleterious(0) probably_damaging(0.911) TCGA-EB-A431-01 8 55542401 55542401 G A RP1 Missense_Mutation p.D1987N 0.41 tolerated(0.98) benign(0.012) TCGA-EB-A431-01 8 56435946 56435946 C G XKR4 Silent p.A371A 0.41 TCGA-EB-A431-01 8 62212631 62212631 C T CLVS1 Missense_Mutation p.A82V 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A431-01 8 6378740 6378740 T A ANGPT2 Missense_Mutation p.E253V 0.16 deleterious(0) possibly_damaging(0.772) TCGA-EB-A431-01 8 6378889 6378889 G C ANGPT2 Missense_Mutation p.I203M 0.26 deleterious(0.02) benign(0.002) TCGA-EB-A431-01 8 67047294 67047294 G A TRIM55 Silent p.L137L 0.21 TCGA-EB-A431-01 8 67064725 67064725 C T TRIM55 Missense_Mutation p.P367S 0.30 tolerated(1) benign(0) TCGA-EB-A431-01 8 67086709 67086709 G A TRIM55 Missense_Mutation p.G510R 0.24 deleterious_low_confidence(0) benign(0.01) TCGA-EB-A431-01 8 67968826 67968826 G A COPS5 Missense_Mutation p.P196L 0.35 deleterious(0.01) benign(0.049) TCGA-EB-A431-01 8 67968827 67968827 G A COPS5 Missense_Mutation p.P196S 0.33 tolerated(0.14) benign(0.141) TCGA-EB-A431-01 8 68139441 68139441 G A ARFGEF1 Missense_Mutation p.H1283Y 0.40 tolerated(0.31) benign(0.232) TCGA-EB-A431-01 8 68965339 68965339 C T PREX2 Silent p.F317F 0.39 TCGA-EB-A431-01 8 69009423 69009423 G A PREX2 Missense_Mutation p.S847N 0.11 tolerated(0.28) probably_damaging(0.977) TCGA-EB-A431-01 8 6914202 6914202 G A DEFA5 Silent p.I6I 0.13 TCGA-EB-A431-01 8 69358572 69358572 G A C8orf34 Missense_Mutation p.G162R 0.16 deleterious(0) probably_damaging(0.997) TCGA-EB-A431-01 8 70539514 70539514 G A SULF1 Silent p.K640K 0.24 TCGA-EB-A431-01 8 70585230 70585230 C T SLCO5A1 Silent p.E807E 0.27 TCGA-EB-A431-01 8 70667669 70667669 C T SLCO5A1 Silent p.K416K 0.21 TCGA-EB-A431-01 8 70981430 70981430 C T PRDM14 Silent p.A222A 0.19 TCGA-EB-A431-01 8 71069075 71069075 G A NCOA2 Missense_Mutation p.P509S 0.28 deleterious(0.05) probably_damaging(0.981) TCGA-EB-A431-01 8 72129059 72129059 G A EYA1 Missense_Mutation p.P410S 0.43 tolerated(0.66) benign(0.147) TCGA-EB-A431-01 8 72754824 72754824 T A MSC 3'UTR 0.18 TCGA-EB-A431-01 8 74922288 74922288 G A LY96 Missense_Mutation p.M85I 0.43 tolerated(0.88) benign(0.01) TCGA-EB-A431-01 8 7752221 7752221 C T DEFB4A 5'UTR 0.09 TCGA-EB-A431-01 8 77767055 77767055 A C ZFHX4 Missense_Mutation p.K2633T 0.09 probably_damaging(0.986) TCGA-EB-A431-01 8 80831189 80831189 G A MRPS28 3'UTR 0.21 TCGA-EB-A431-01 8 86360413 86360413 G A CA3 3'UTR 0.43 TCGA-EB-A431-01 8 87755859 87755859 C G CNGB3 5'UTR 0.14 TCGA-EB-A431-01 8 88365992 88365992 C T CNBD1 Silent p.I427I 0.35 TCGA-EB-A431-01 8 88886169 88886169 C T DCAF4L2 Missense_Mutation p.E11K 0.16 deleterious(0.02) benign(0.117) TCGA-EB-A431-01 8 89339334 89339334 G A MMP16 Silent p.V34V 0.24 TCGA-EB-A431-01 8 95158228 95158228 G A CDH17 Missense_Mutation p.R699W 0.22 tolerated(0.19) benign(0.004) TCGA-EB-A431-01 8 9623898 9623898 C T TNKS Missense_Mutation p.P1235S 0.17 tolerated(0.1) probably_damaging(0.986) TCGA-EB-A431-01 9 101156531 101156531 C T GABBR2 Missense_Mutation p.R435K 0.39 tolerated(0.89) benign(0) TCGA-EB-A431-01 9 101542534 101542534 G A ANKS6 Silent p.P435P 0.28 TCGA-EB-A431-01 9 101542535 101542535 G A ANKS6 Missense_Mutation p.P435L 0.27 tolerated(0.14) benign(0.006) TCGA-EB-A431-01 9 104079713 104079713 C T LPPR1 Missense_Mutation p.P294S 0.22 tolerated(0.41) benign(0.001) TCGA-EB-A431-01 9 104193153 104193153 G A ALDOB Missense_Mutation p.P6L 0.14 deleterious(0.02) benign(0.236) TCGA-EB-A431-01 9 104193154 104193154 G C ALDOB Missense_Mutation p.P6A 0.17 tolerated(0.05) benign(0.011) TCGA-EB-A431-01 9 104375782 104375782 G A GRIN3A Missense_Mutation p.S881F 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A431-01 9 104433302 104433302 G A GRIN3A Silent p.F464F 0.19 TCGA-EB-A431-01 9 104449477 104449477 G A GRIN3A Silent p.P235P 0.26 TCGA-EB-A431-01 9 104449478 104449478 G A GRIN3A Missense_Mutation p.P235L 0.26 tolerated(0.07) benign(0.098) TCGA-EB-A431-01 9 107266630 107266630 G A OR13F1 Silent p.A29A 0.46 TCGA-EB-A431-01 9 107288614 107288614 G A OR13C4 Missense_Mutation p.P293S 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A431-01 9 107332146 107332146 G A OR13C8 Missense_Mutation p.G233E 0.23 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 9 107360982 107360982 G A OR13C5 Missense_Mutation p.S238F 0.38 tolerated(1) benign(0.001) TCGA-EB-A431-01 9 107568553 107568553 G A ABCA1 Missense_Mutation p.P1478L 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-EB-A431-01 9 111625232 111625232 A G ACTL7A Silent p.G210G 0.22 TCGA-EB-A431-01 9 111693446 111693446 G A IKBKAP 5'UTR 0.30 TCGA-EB-A431-01 9 113166749 113166749 G A SVEP1 Missense_Mutation p.S3175F 0.43 benign(0.072) TCGA-EB-A431-01 9 113170187 113170187 C T SVEP1 Missense_Mutation p.G2565S 0.39 probably_damaging(1) TCGA-EB-A431-01 9 113170290 113170290 G A SVEP1 Silent p.L2530L 0.16 TCGA-EB-A431-01 9 113637696 113637696 C T LPAR1 3'UTR 0.60 TCGA-EB-A431-01 9 113703941 113703941 C T LPAR1 Missense_Mutation p.G185S 0.44 tolerated(0.09) probably_damaging(1) TCGA-EB-A431-01 9 115950674 115950674 G A FKBP15 Missense_Mutation p.S424L 0.46 deleterious(0.04) benign(0.008) TCGA-EB-A431-01 9 117002512 117002512 G A COL27A1 Missense_Mutation p.D914N 0.36 unknown(0) TCGA-EB-A431-01 9 117104348 117104348 G A AKNA Missense_Mutation p.P1272L 0.26 tolerated(0.07) possibly_damaging(0.798) TCGA-EB-A431-01 9 117826345 117826345 C T TNC Missense_Mutation p.E1164K 0.52 tolerated(0.38) benign(0.002) TCGA-EB-A431-01 9 119382666 119382666 G A ASTN2 Silent p.I992I 0.51 TCGA-EB-A431-01 9 121929881 121929881 C T BRINP1 Silent p.K589K 0.43 TCGA-EB-A431-01 9 121976306 121976306 C T BRINP1 Silent p.E271E 0.26 TCGA-EB-A431-01 9 123199634 123199634 G A CDK5RAP2 Silent p.F1298F 0.20 TCGA-EB-A431-01 9 123628356 123628356 G A PHF19 Silent p.C243C 0.25 TCGA-EB-A431-01 9 124936863 124936863 G A MORN5 Silent p.T132T 0.39 TCGA-EB-A431-01 9 125148982 125148982 G A PTGS1 Missense_Mutation p.D423N 0.13 tolerated(0.09) benign(0.079) TCGA-EB-A431-01 9 125438296 125438296 G A OR1L3 Missense_Mutation p.M296I 0.24 tolerated(0.21) benign(0.033) TCGA-EB-A431-01 9 125562836 125562836 G A OR1K1 Silent p.L145L 0.13 TCGA-EB-A431-01 9 127566451 127566451 A G OLFML2A Missense_Mutation p.N333S 0.19 tolerated(0.72) benign(0.039) TCGA-EB-A431-01 9 128094858 128094858 T A GAPVD1 Missense_Mutation p.F793Y 0.22 tolerated_low_confidence(0.21) probably_damaging(0.99) TCGA-EB-A431-01 9 129154390 129154390 C T MVB12B Missense_Mutation p.P152L 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A431-01 9 129831618 129831618 C T RALGPS1 Missense_Mutation p.P198L 0.29 deleterious(0) probably_damaging(0.992) TCGA-EB-A431-01 9 130167013 130167013 C T SLC2A8 Intron 0.30 TCGA-EB-A431-01 9 130630268 130630268 G A AK1 3'UTR 0.49 TCGA-EB-A431-01 9 130630269 130630269 G A AK1 3'UTR 0.49 TCGA-EB-A431-01 9 130700160 130700160 C T DPM2 5'UTR 0.15 TCGA-EB-A431-01 9 131150102 131150102 C T URM1 Silent p.I38I 0.53 TCGA-EB-A431-01 9 131568238 131568238 C T TBC1D13 Missense_Mutation p.S340F 0.28 deleterious(0) possibly_damaging(0.696) TCGA-EB-A431-01 9 132510994 132510994 G A PTGES Missense_Mutation p.A50V 0.32 tolerated(0.12) probably_damaging(0.92) TCGA-EB-A431-01 9 133352336 133352336 G A ASS1 Missense_Mutation p.E226K 0.35 tolerated(0.08) benign(0.016) TCGA-EB-A431-01 9 133498099 133498099 C T FUBP3 Missense_Mutation p.S259F 0.47 tolerated(0.25) benign(0.073) TCGA-EB-A431-01 9 133512435 133512435 C T FUBP3 3'UTR 0.12 TCGA-EB-A431-01 9 133750428 133750428 C T ABL1 Missense_Mutation p.S439F 0.20 deleterious(0) probably_damaging(0.987) TCGA-EB-A431-01 9 133760588 133760588 C T ABL1 Missense_Mutation p.P990S 0.13 tolerated_low_confidence(0.2) benign(0.307) TCGA-EB-A431-01 9 134049632 134049632 C A NUP214 Silent p.L1028L 0.21 TCGA-EB-A431-01 9 134346364 134346364 C T PRRC2B Missense_Mutation p.P701S 0.28 tolerated(0.28) probably_damaging(0.999) TCGA-EB-A431-01 9 134350999 134350999 C T PRRC2B Silent p.L1161L 0.23 TCGA-EB-A431-01 9 134386721 134386721 C T POMT1 Intron 0.27 TCGA-EB-A431-01 9 135201838 135201838 A T SETX Missense_Mutation p.F1716Y 0.23 tolerated(0.19) probably_damaging(0.968) TCGA-EB-A431-01 9 135201882 135201882 G A SETX Silent p.F1701F 0.14 TCGA-EB-A431-01 9 135277525 135277525 G A TTF1 Silent p.N228N 0.40 TCGA-EB-A431-01 9 136031458 136031458 G A GBGT1 Intron 0.25 TCGA-EB-A431-01 9 136230503 136230503 G A SURF4 Missense_Mutation p.P226S 0.19 tolerated(0.23) possibly_damaging(0.677) TCGA-EB-A431-01 9 136271942 136271942 G C REXO4 3'UTR 0.31 TCGA-EB-A431-01 9 136338637 136338637 G A SLC2A6 Silent p.G374G 0.55 TCGA-EB-A431-01 9 136402577 136402577 C A ADAMTSL2 Silent p.A47A 0.30 TCGA-EB-A431-01 9 136654407 136654407 G A VAV2 Missense_Mutation p.S416F 0.54 deleterious(0) probably_damaging(0.948) TCGA-EB-A431-01 9 136857249 136857249 G A VAV2 Missense_Mutation p.S51F 0.37 deleterious(0.05) possibly_damaging(0.544) TCGA-EB-A431-01 9 137779311 137779311 G A FCN2 3'UTR 0.71 TCGA-EB-A431-01 9 138416994 138416994 G A LCN1 Silent p.G174G 0.14 TCGA-EB-A431-01 9 139369770 139369770 G A SEC16A Silent p.S766S 0.36 TCGA-EB-A431-01 9 139369771 139369771 G A SEC16A Missense_Mutation p.S766F 0.36 deleterious(0.05) possibly_damaging(0.805) TCGA-EB-A431-01 9 139371741 139371741 G A SEC16A Silent p.P109P 0.23 TCGA-EB-A431-01 9 139391598 139391598 G A NOTCH1 Missense_Mutation p.S2198L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A431-01 9 139412267 139412267 G A NOTCH1 Missense_Mutation p.P460S 0.17 deleterious(0.02) probably_damaging(1) TCGA-EB-A431-01 9 139910781 139910781 G A ABCA2 Silent p.S1022S 0.20 TCGA-EB-A431-01 9 139937542 139937542 A G NPDC1 Intron 0.19 TCGA-EB-A431-01 9 141016374 141016374 C T CACNA1B Missense_Mutation p.H2315Y 0.21 tolerated(0.32) probably_damaging(0.993) TCGA-EB-A431-01 9 27950174 27950174 C T LINGO2 Missense_Mutation p.V166I 0.43 deleterious(0.01) probably_damaging(0.967) TCGA-EB-A431-01 9 35700363 35700363 G A TLN1 Missense_Mutation p.S2162F 0.44 deleterious(0) benign(0.158) TCGA-EB-A431-01 9 71152295 71152295 C T TMEM252 Silent p.L131L 0.39 TCGA-EB-A431-01 9 77377379 77377379 G A TRPM6 Missense_Mutation p.P1403L 0.36 tolerated_low_confidence(0.17) benign(0.002) TCGA-EB-A431-01 9 77377854 77377854 T C TRPM6 Missense_Mutation p.T1245A 0.49 tolerated(0.37) benign(0.002) TCGA-EB-A431-01 9 77400934 77400934 G A TRPM6 Silent p.F925F 0.28 TCGA-EB-A431-01 9 79321651 79321651 C T PRUNE2 Missense_Mutation p.E1847K 0.70 tolerated(0.33) benign(0.006) TCGA-EB-A431-01 9 79324818 79324818 G A PRUNE2 Missense_Mutation p.P791L 0.42 deleterious(0.05) benign(0.075) TCGA-EB-A431-01 9 79520997 79520997 T A PRUNE2 5'UTR 0.70 TCGA-EB-A431-01 9 8518119 8518119 G A PTPRD Silent p.V424V 0.45 TCGA-EB-A431-01 9 87570348 87570348 G A NTRK2 Silent p.R696R 0.33 TCGA-EB-A431-01 9 90499872 90499872 T A SPATA31E1 Nonsense_Mutation p.L157* 0.22 TCGA-EB-A431-01 9 91793242 91793242 G A SHC3 Missense_Mutation p.P45L 0.45 tolerated(0.09) benign(0.039) TCGA-EB-A431-01 9 93375576 93375576 G A DIRAS2 Silent p.I178I 0.64 TCGA-EB-A431-01 9 93641166 93641166 C T SYK Silent p.T504T 0.26 TCGA-EB-A431-01 9 95610657 95610657 G A ZNF484 Missense_Mutation p.R140C 0.17 deleterious(0.05) benign(0.27) TCGA-EB-A431-01 9 96051656 96051656 C T WNK2 Silent p.P1577P 0.30 TCGA-EB-A431-01 9 97082649 97082649 C T NUTM2F Silent p.E403E 0.16 TCGA-EB-A431-01 X 102317923 102317923 C T BEX1 Missense_Mutation p.E94K 0.62 tolerated(0.06) possibly_damaging(0.528) TCGA-EB-A431-01 X 105153206 105153206 C T NRK Nonsense_Mutation p.Q526* 0.65 TCGA-EB-A431-01 X 105449714 105449714 C T MUM1L1 Silent p.L97L 0.61 TCGA-EB-A431-01 X 106064148 106064148 G A TBC1D8B Missense_Mutation p.E95K 0.57 deleterious(0.02) benign(0.434) TCGA-EB-A431-01 X 107225087 107225087 G T TEX13B Missense_Mutation p.Q91K 0.60 tolerated(0.08) benign(0.267) TCGA-EB-A431-01 X 107225088 107225088 C T TEX13B Silent p.V90V 0.60 TCGA-EB-A431-01 X 115590144 115590144 G A SLC6A14 3'UTR 0.70 TCGA-EB-A431-01 X 118222401 118222401 G A KIAA1210 Missense_Mutation p.S931L 0.84 deleterious(0.03) benign(0.3) TCGA-EB-A431-01 X 118284365 118284365 C T KIAA1210 Missense_Mutation p.G60R 0.25 tolerated_low_confidence(0.17) benign(0.361) TCGA-EB-A431-01 X 123019668 123019668 T C XIAP Silent p.F52F 0.60 TCGA-EB-A431-01 X 123780625 123780625 T A TENM1 Missense_Mutation p.N539Y 0.61 deleterious(0) possibly_damaging(0.84) TCGA-EB-A431-01 X 127185183 127185183 C T ACTRT1 Missense_Mutation p.D335N 0.58 tolerated(0.07) benign(0.078) TCGA-EB-A431-01 X 129148218 129148218 C T BCORL1 Silent p.L490L 0.38 TCGA-EB-A431-01 X 129149995 129149995 C T BCORL1 Missense_Mutation p.R1083W 0.30 probably_damaging(0.977) TCGA-EB-A431-01 X 132092468 132092468 G A HS6ST2 Missense_Mutation p.P55S 0.81 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-EB-A431-01 X 134494444 134494444 C T ZNF449 Missense_Mutation p.R334W 0.44 tolerated(0.11) benign(0.006) TCGA-EB-A431-01 X 135430047 135430047 G A GPR112 Silent p.V1394V 0.23 TCGA-EB-A431-01 X 135430106 135430106 C T GPR112 Missense_Mutation p.S1414L 0.45 deleterious(0) probably_damaging(0.996) TCGA-EB-A431-01 X 135432151 135432151 G A GPR112 Missense_Mutation p.D2096N 0.65 tolerated(0.1) benign(0.042) TCGA-EB-A431-01 X 135469957 135469957 C T GPR112 Missense_Mutation p.S2612L 0.33 deleterious(0.01) possibly_damaging(0.748) TCGA-EB-A431-01 X 13636087 13636087 G A EGFL6 Missense_Mutation p.M339I 0.64 tolerated(0.2) benign(0.002) TCGA-EB-A431-01 X 138678917 138678917 C T MCF2 Missense_Mutation p.E766K 0.38 tolerated(0.23) benign(0.15) TCGA-EB-A431-01 X 139865941 139865941 C T CDR1 Silent p.R197R 0.73 TCGA-EB-A431-01 X 140996152 140996152 C T MAGEC1 Silent p.L988L 0.76 TCGA-EB-A431-01 X 141291407 141291407 C T MAGEC2 Missense_Mutation p.D123N 0.41 deleterious(0.05) benign(0.265) TCGA-EB-A431-01 X 144904339 144904339 C T SLITRK2 Silent p.G132G 0.72 TCGA-EB-A431-01 X 151303337 151303337 C T MAGEA10 Missense_Mutation p.M252I 0.58 tolerated(0.55) benign(0.122) TCGA-EB-A431-01 X 151821475 151821475 C T GABRQ Missense_Mutation p.L544F 0.82 tolerated(0.14) possibly_damaging(0.849) TCGA-EB-A431-01 X 151935230 151935230 C T MAGEA3 Missense_Mutation p.E313K 0.43 tolerated(0.21) benign(0.025) TCGA-EB-A431-01 X 152482500 152482500 G A MAGEA1 Missense_Mutation p.L171F 0.83 deleterious(0.04) possibly_damaging(0.618) TCGA-EB-A431-01 X 153648589 153648589 C T TAZ Missense_Mutation p.P229S 0.51 deleterious(0.02) probably_damaging(0.978) TCGA-EB-A431-01 X 154157375 154157375 G A F8 Missense_Mutation p.P1564S 0.77 tolerated(0.13) benign(0.118) TCGA-EB-A431-01 X 1584466 1584466 C T P2RY8 Missense_Mutation p.R329K 0.51 tolerated(0.2) benign(0.227) TCGA-EB-A431-01 X 17819414 17819414 G A RAI2 Silent p.P239P 0.56 TCGA-EB-A431-01 X 31165421 31165421 A T DMD Missense_Mutation p.L3590I 0.65 possibly_damaging(0.567) TCGA-EB-A431-01 X 37027179 37027179 C T FAM47C Silent p.S232S 0.63 TCGA-EB-A431-01 X 37027539 37027539 C T FAM47C Silent p.S352S 0.76 TCGA-EB-A431-01 X 38268275 38268275 G A OTC Missense_Mutation p.M288I 0.52 tolerated(0.19) benign(0.012) TCGA-EB-A431-01 X 47307369 47307369 G A ZNF41 Silent p.I600I 0.69 TCGA-EB-A431-01 X 48206418 48206418 G A SSX3 3'UTR 0.35 TCGA-EB-A431-01 X 48369807 48369807 C T PORCN Silent p.F87F 0.87 TCGA-EB-A431-01 X 48826246 48826246 C T KCND1 Missense_Mutation p.E145K 0.24 deleterious(0.01) benign(0.045) TCGA-EB-A431-01 X 48896834 48896834 G A TFE3 Missense_Mutation p.S111L 0.64 deleterious(0) unknown(0) TCGA-EB-A431-01 X 49074219 49074219 T G CACNA1F Missense_Mutation p.E1039D 0.80 tolerated(0.06) benign(0.379) TCGA-EB-A431-01 X 49958758 49958758 C T AKAP4 Silent p.Q202Q 0.79 TCGA-EB-A431-01 X 49961578 49961578 G A AKAP4 Silent p.I80I 0.78 TCGA-EB-A431-01 X 52844184 52844184 C T XAGE5 Missense_Mutation p.P83S 0.85 tolerated(0.1) benign(0.003) TCGA-EB-A431-01 X 53574695 53574695 G A HUWE1 Silent p.T3525T 0.70 TCGA-EB-A431-01 X 54978520 54978520 C T PFKFB1 Missense_Mutation p.D222N 0.50 benign(0.011) TCGA-EB-A431-01 X 69639608 69639608 C T KIF4A Missense_Mutation p.P1157L 0.73 deleterious_low_confidence(0) benign(0.162) TCGA-EB-A431-01 X 72673455 72673455 G A CDX4 Missense_Mutation p.R202K 0.69 tolerated(0.06) probably_damaging(0.987) TCGA-EB-A431-01 X 73963314 73963314 C T KIAA2022 Missense_Mutation p.D360N 0.68 deleterious(0.01) probably_damaging(0.969) TCGA-EB-A431-01 X 79286048 79286048 C A TBX22 Missense_Mutation p.P334H 0.69 tolerated(0.06) probably_damaging(0.994) TCGA-EB-A431-01 X 91642806 91642806 C T PCDH11X Missense_Mutation p.H1073Y 0.57 tolerated(0.19) benign(0.136) TCGA-EB-A431-01 X 99551222 99551222 C T PCDH19 3'UTR 0.64 TCGA-EB-A44N-01 10 17085910 17085910 G A CUBN Missense_Mutation p.R1249C 0.31 deleterious(0.03) probably_damaging(0.954) TCGA-EB-A44N-01 10 33140809 33140809 C T C10ORF68 Missense_Mutation p.P567S 0.22 tolerated(1) benign(0.001) TCGA-EB-A44N-01 10 52066885 52066885 C T SGMS1 3'UTR 0.19 TCGA-EB-A44N-01 10 52619604 52619604 G A A1CF Intron 0.21 TCGA-EB-A44N-01 10 72083623 72083623 G A LRRC20 Silent p.I132I 0.26 TCGA-EB-A44N-01 10 73121980 73121980 C T SLC29A3 Missense_Mutation p.P348L 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 11 108383918 108383918 G A EXPH5 Silent p.V772V 0.19 TCGA-EB-A44N-01 11 118106283 118106283 G A MPZL3 Missense_Mutation p.S158F 0.19 deleterious(0) probably_damaging(0.961) TCGA-EB-A44N-01 11 125618506 125618506 C T PATE1 Missense_Mutation p.P87S 0.16 deleterious(0.04) benign(0.361) TCGA-EB-A44N-01 11 33563987 33563987 C T KIAA1549L 5'UTR 0.19 TCGA-EB-A44N-01 11 45245939 45245939 T C PRDM11 Missense_Mutation p.F305S 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 11 45949528 45949528 G A GYLTL1B Silent p.P554P 0.11 TCGA-EB-A44N-01 11 47350760 47350760 C T MADD 3'UTR 0.17 TCGA-EB-A44N-01 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.09 tolerated(0.09) benign(0.141) TCGA-EB-A44N-01 11 5322705 5322705 G A OR51B4 Missense_Mutation p.L158F 0.09 tolerated(1) benign(0.034) TCGA-EB-A44N-01 11 59282893 59282893 G A OR4D9 Missense_Mutation p.G170R 0.09 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 11 63231041 63231041 C T HRASLS5 Silent p.A258A 0.07 TCGA-EB-A44N-01 11 7111147 7111147 C T RBMXL2 Missense_Mutation p.R266C 0.07 deleterious(0.02) possibly_damaging(0.689) TCGA-EB-A44N-01 12 111748431 111748431 C T CUX2 Silent p.F615F 0.08 TCGA-EB-A44N-01 12 125396255 125396255 G A UBC 3'UTR 0.20 TCGA-EB-A44N-01 12 130648636 130648636 C T FZD10 Silent p.V383V 0.16 TCGA-EB-A44N-01 12 130927048 130927048 G A RIMBP2 Silent p.D266D 0.19 TCGA-EB-A44N-01 12 132325291 132325291 C T MMP17 Missense_Mutation p.P199L 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 12 13232840 13232840 T A KIAA1467 Missense_Mutation p.M587K 0.25 tolerated(0.39) benign(0.3) TCGA-EB-A44N-01 12 132512040 132512040 C T EP400 Silent p.A1691A 0.20 TCGA-EB-A44N-01 12 48258890 48258890 G A VDR Nonsense_Mutation p.R123* 0.17 TCGA-EB-A44N-01 12 49723650 49723650 C T TROAP Missense_Mutation p.A392V 0.16 deleterious(0) probably_damaging(0.977) TCGA-EB-A44N-01 12 55026970 55026970 C A LACRT Missense_Mutation p.G36W 0.09 deleterious_low_confidence(0.04) probably_damaging(0.984) TCGA-EB-A44N-01 13 28622457 28622457 C T FLT3 Missense_Mutation p.R387Q 0.13 tolerated(1) benign(0) TCGA-EB-A44N-01 13 95816686 95816686 A C ABCC4 Silent p.A707A 0.22 TCGA-EB-A44N-01 14 107211006 107211006 C T IGHV3-73 Missense_Mutation p.D95N 0.23 tolerated_low_confidence(1) probably_damaging(0.952) TCGA-EB-A44N-01 14 23816838 23816838 G A SLC22A17 Silent p.A349A 0.19 TCGA-EB-A44N-01 14 31107399 31107399 G A SCFD1 Silent p.L127L 0.32 TCGA-EB-A44N-01 14 59789865 59789865 G T DAAM1 Silent p.L232L 0.11 TCGA-EB-A44N-01 14 59789868 59789868 T C DAAM1 Silent p.V233V 0.11 TCGA-EB-A44N-01 14 77236315 77236315 C T VASH1 Missense_Mutation p.P107S 0.13 deleterious(0) probably_damaging(0.998) TCGA-EB-A44N-01 14 91805735 91805735 G A CCDC88C Silent p.S232S 0.18 TCGA-EB-A44N-01 15 22383185 22383185 C T OR4N4 Missense_Mutation p.S238F 0.09 deleterious(0.01) probably_damaging(1) TCGA-EB-A44N-01 15 24922731 24922731 C T NPAP1 Missense_Mutation p.P573S 0.21 tolerated(0.36) benign(0.07) TCGA-EB-A44N-01 15 59373274 59373274 A T RNF111 Silent p.I696I 0.22 TCGA-EB-A44N-01 15 67457361 67457361 C T SMAD3 Missense_Mutation p.A112V 0.13 deleterious(0.03) possibly_damaging(0.551) TCGA-EB-A44N-01 15 82574481 82574481 T C FAM154B Missense_Mutation p.L92P 0.10 tolerated(0.07) possibly_damaging(0.841) TCGA-EB-A44N-01 15 88472466 88472466 C T NTRK3 Missense_Mutation p.D697N 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 16 14041863 14041863 C T ERCC4 Missense_Mutation p.P804S 0.15 tolerated(0.06) benign(0.057) TCGA-EB-A44N-01 16 1961924 1961924 C T HS3ST6 Silent p.L201L 0.08 TCGA-EB-A44N-01 16 20873639 20873639 A C DCUN1D3 Missense_Mutation p.D74E 0.08 tolerated(0.76) benign(0.002) TCGA-EB-A44N-01 16 4042360 4042360 G A ADCY9 Missense_Mutation p.S665F 0.10 tolerated(0.14) benign(0.158) TCGA-EB-A44N-01 16 58538520 58538520 G A NDRG4 Silent p.V165V 0.09 TCGA-EB-A44N-01 16 71570874 71570874 A T CHST4 Silent p.I98I 0.18 TCGA-EB-A44N-01 16 84778965 84778965 C T USP10 Missense_Mutation p.S293L 0.18 tolerated_low_confidence(0.33) benign(0.007) TCGA-EB-A44N-01 17 10300222 10300222 C T MYH8 Silent p.T1420T 0.27 TCGA-EB-A44N-01 17 10428625 10428625 C T MYH2 Silent p.G1526G 0.10 TCGA-EB-A44N-01 17 19284560 19284560 C T MAPK7 Silent p.F346F 0.08 TCGA-EB-A44N-01 17 25639378 25639378 C T WSB1 Missense_Mutation p.L417F 0.12 deleterious(0) probably_damaging(0.998) TCGA-EB-A44N-01 17 30302607 30302607 C T SUZ12 Missense_Mutation p.S233F 0.19 deleterious(0) possibly_damaging(0.844) TCGA-EB-A44N-01 17 3144209 3144209 G A OR1D4 RNA 0.17 TCGA-EB-A44N-01 17 33469070 33469070 A G NLE1 Silent p.G30G 0.26 TCGA-EB-A44N-01 17 33679659 33679659 C T SLFN11 Missense_Mutation p.D808N 0.11 deleterious(0.05) benign(0.317) TCGA-EB-A44N-01 17 36552187 36552187 C T SOCS7 Missense_Mutation p.S571F 0.12 deleterious_low_confidence(0.02) benign(0.335) TCGA-EB-A44N-01 17 3661109 3661109 G A ITGAE Missense_Mutation p.S304F 0.16 deleterious(0) possibly_damaging(0.804) TCGA-EB-A44N-01 17 3769274 3769274 G A CAMKK1 Missense_Mutation p.S496F 0.21 deleterious(0) probably_damaging(0.985) TCGA-EB-A44N-01 17 38179446 38179446 G A MED24 Missense_Mutation p.H730Y 0.20 tolerated(0.14) possibly_damaging(0.699) TCGA-EB-A44N-01 17 58740465 58740467 CTC TT PPM1D Frame_Shift_Del p.A457Vfs*8 0.11 TCGA-EB-A44N-01 17 61988296 61988296 C T CSHL1 Intron 0.19 TCGA-EB-A44N-01 17 6690673 6690673 G A FBXO39 Missense_Mutation p.E419K 0.21 tolerated(0.1) benign(0.05) TCGA-EB-A44N-01 17 71410896 71410896 G A SDK2 Missense_Mutation p.P791S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44N-01 17 73569096 73569096 T G LLGL2 Missense_Mutation p.V821G 0.12 deleterious(0) possibly_damaging(0.493) TCGA-EB-A44N-01 17 73727018 73727018 C T ITGB4 Silent p.I355I 0.18 TCGA-EB-A44N-01 18 43205818 43205818 C T SLC14A2 Silent p.I107I 0.18 TCGA-EB-A44N-01 18 43243768 43243768 C T SLC14A2 Missense_Mutation p.P457L 0.16 tolerated_low_confidence(0.19) benign(0.034) TCGA-EB-A44N-01 18 47788478 47788478 G A CCDC11 Missense_Mutation p.R61C 0.13 tolerated(0.16) benign(0.015) TCGA-EB-A44N-01 19 11978438 11978438 C T ZNF439 Missense_Mutation p.P185L 0.18 tolerated(0.14) benign(0.017) TCGA-EB-A44N-01 19 13409936 13409936 C T CACNA1A Silent p.K837K 0.14 TCGA-EB-A44N-01 19 22271564 22271564 C T ZNF257 Missense_Mutation p.H338Y 0.20 deleterious(0.01) possibly_damaging(0.896) TCGA-EB-A44N-01 19 37310509 37310509 C T ZNF790 Missense_Mutation p.R246K 0.23 tolerated(0.12) benign(0.142) TCGA-EB-A44N-01 19 42187860 42187860 C T CEACAM7 Missense_Mutation p.V188I 0.20 tolerated(0.21) benign(0.299) TCGA-EB-A44N-01 19 42187861 42187861 C T CEACAM7 Silent p.L187L 0.20 TCGA-EB-A44N-01 19 42311277 42311277 C T CEACAM3 Intron 0.14 TCGA-EB-A44N-01 19 50984231 50984231 A G EMC10 Silent p.K225K 0.13 TCGA-EB-A44N-01 19 55331194 55331194 G A KIR3DL1 Missense_Mutation p.A128T 0.17 deleterious(0) probably_damaging(0.974) TCGA-EB-A44N-01 19 55817624 55817624 C T BRSK1 Missense_Mutation p.P632L 0.12 deleterious(0.01) benign(0.275) TCGA-EB-A44N-01 19 57641421 57641421 C T USP29 Nonsense_Mutation p.Q460* 0.16 TCGA-EB-A44N-01 19 58438142 58438142 G A ZNF418 Silent p.L469L 0.16 TCGA-EB-A44N-01 19 6937383 6937383 G A EMR1 Silent p.G837G 0.22 TCGA-EB-A44N-01 19 9049206 9049206 G A MUC16 Nonsense_Mutation p.R10809* 0.13 TCGA-EB-A44N-01 1 117633178 117633178 C T TTF2 Nonsense_Mutation p.Q841* 0.23 TCGA-EB-A44N-01 1 147230966 147230966 C G GJA5 Silent p.V127V 0.16 TCGA-EB-A44N-01 1 150463090 150463090 C T TARS2 Missense_Mutation p.S134F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44N-01 1 155269944 155269944 C A PKLR Silent p.L76L 0.33 TCGA-EB-A44N-01 1 160970516 160970516 G A F11R Missense_Mutation p.S98F 0.13 deleterious(0) probably_damaging(0.965) TCGA-EB-A44N-01 1 169698738 169698738 C T SELE Nonsense_Mutation p.W264* 0.17 TCGA-EB-A44N-01 1 171303725 171303725 C T FMO4 Missense_Mutation p.P335S 0.19 deleterious(0.03) possibly_damaging(0.9) TCGA-EB-A44N-01 1 176915072 176915072 C T ASTN1 Missense_Mutation p.G747R 0.08 tolerated(0.25) benign(0.347) TCGA-EB-A44N-01 1 179815146 179815146 G A TOR1AIP2 3'UTR 0.25 TCGA-EB-A44N-01 1 181480520 181480520 C T CACNA1E Missense_Mutation p.P129L 0.12 deleterious(0.02) possibly_damaging(0.908) TCGA-EB-A44N-01 1 196682875 196682875 C T CFH Silent p.S449S 0.39 TCGA-EB-A44N-01 1 203186139 203186139 G A CHIT1 Missense_Mutation p.L427F 0.40 deleterious(0.03) probably_damaging(0.954) TCGA-EB-A44N-01 1 208227799 208227799 G A PLXNA2 Silent p.F941F 0.26 TCGA-EB-A44N-01 1 215987133 215987133 C T USH2A Silent p.Q3228Q 0.30 TCGA-EB-A44N-01 1 228432246 228432246 G A OBSCN Missense_Mutation p.R1244K 0.24 benign(0.009) TCGA-EB-A44N-01 1 22903196 22903196 G A EPHA8 Missense_Mutation p.E216K 0.27 deleterious(0.02) benign(0.006) TCGA-EB-A44N-01 1 248367179 248367179 G A OR2M3 Silent p.Q270Q 0.16 TCGA-EB-A44N-01 1 248487730 248487730 G A OR2M7 Silent p.L47L 0.15 TCGA-EB-A44N-01 1 248525721 248525721 T C OR2T4 Missense_Mutation p.V280A 0.15 deleterious(0.01) possibly_damaging(0.521) TCGA-EB-A44N-01 1 3639990 3639990 T A TP73 Missense_Mutation p.V230D 0.18 tolerated(0.05) possibly_damaging(0.793) TCGA-EB-A44N-01 1 38197087 38197087 C T EPHA10 Silent p.G553G 0.11 TCGA-EB-A44N-01 1 40627211 40627211 C T RLF Missense_Mutation p.S47L 0.27 tolerated_low_confidence(0.13) benign(0.002) TCGA-EB-A44N-01 1 41486228 41486228 C T SLFNL1 Silent p.T35T 0.15 TCGA-EB-A44N-01 1 43779573 43779573 A - TIE1 Frame_Shift_Del p.T782Pfs*35 0.10 TCGA-EB-A44N-01 1 45509063 45509063 G A ZSWIM5 Silent p.S479S 0.21 TCGA-EB-A44N-01 1 45797951 45797951 G A MUTYH Missense_Mutation p.R271W 0.19 deleterious(0) probably_damaging(0.996) TCGA-EB-A44N-01 1 45797952 45797952 G A MUTYH Silent p.A270A 0.18 TCGA-EB-A44N-01 1 55464759 55464759 C T BSND 5'UTR 0.15 TCGA-EB-A44N-01 1 64643703 64643703 C T ROR1 Missense_Mutation p.P660L 0.12 deleterious(0) benign(0.297) TCGA-EB-A44N-01 1 70736559 70736559 G A ANKRD13C Missense_Mutation p.P492L 0.22 deleterious(0) benign(0.075) TCGA-EB-A44N-01 20 5927180 5927180 C T TRMT6 Splice_Site p.X43_splice 0.32 TCGA-EB-A44N-01 21 30318518 30318518 T A LTN1 Silent p.I1239I 0.22 TCGA-EB-A44N-01 21 31802784 31802784 C T KRTAP13-4 Missense_Mutation p.S64F 0.09 deleterious(0.02) possibly_damaging(0.521) TCGA-EB-A44N-01 21 37605217 37605217 C T DOPEY2 Silent p.N822N 0.15 TCGA-EB-A44N-01 21 41561163 41561163 G A DSCAM Missense_Mutation p.P787S 0.13 deleterious(0.01) benign(0.21) TCGA-EB-A44N-01 22 24122672 24122672 C T MMP11 Silent p.I155I 0.15 TCGA-EB-A44N-01 22 38155495 38155495 C G TRIOBP Intron 0.13 TCGA-EB-A44N-01 2 112566676 112566676 A T ANAPC1 Missense_Mutation p.L1227H 0.13 deleterious(0) probably_damaging(0.997) TCGA-EB-A44N-01 2 113416587 113416587 G T SLC20A1 Nonsense_Mutation p.G322* 0.08 TCGA-EB-A44N-01 2 138400118 138400118 C A THSD7B Missense_Mutation p.P1290H 0.12 deleterious(0) unknown(0) TCGA-EB-A44N-01 2 170502561 170502561 C T CCDC173 Silent p.S483S 0.18 TCGA-EB-A44N-01 2 179569643 179569643 T C TTN Silent p.E9885E 0.11 TCGA-EB-A44N-01 2 179638752 179638752 C T TTN Silent p.L2381L 0.09 TCGA-EB-A44N-01 2 182542579 182542579 C T NEUROD1 Missense_Mutation p.D337N 0.15 deleterious(0) benign(0.167) TCGA-EB-A44N-01 2 18765443 18765443 C T NT5C1B Missense_Mutation p.E328K 0.24 tolerated(0.06) benign(0.014) TCGA-EB-A44N-01 2 198948940 198948940 G A PLCL1 Silent p.E233E 0.25 TCGA-EB-A44N-01 2 227662920 227662920 G A IRS1 Silent p.L179L 0.08 TCGA-EB-A44N-01 2 232378297 232378297 C T LINC00471 RNA 0.22 TCGA-EB-A44N-01 2 242430480 242430480 C T FARP2 Missense_Mutation p.R837W 0.18 deleterious(0.03) possibly_damaging(0.832) TCGA-EB-A44N-01 2 3196257 3196257 G A TSSC1 Missense_Mutation p.S306L 0.13 tolerated(0.05) possibly_damaging(0.885) TCGA-EB-A44N-01 2 37571958 37571958 G A QPCT Silent p.G28G 0.17 TCGA-EB-A44N-01 2 90060884 90060884 C T IGKV6D-21 Silent p.V77V 0.14 TCGA-EB-A44N-01 3 10979981 10979981 G A SLC6A11 Missense_Mutation p.G598S 0.21 tolerated(0.73) possibly_damaging(0.629) TCGA-EB-A44N-01 3 111603012 111603012 G A PHLDB2 Missense_Mutation p.D30N 0.14 tolerated_low_confidence(0.31) benign(0.003) TCGA-EB-A44N-01 3 120998723 120998723 G A STXBP5L Missense_Mutation p.G677E 0.12 tolerated(0.14) possibly_damaging(0.792) TCGA-EB-A44N-01 3 122459496 122459496 A G HSPBAP1 Missense_Mutation p.F388S 0.11 deleterious(0) probably_damaging(0.973) TCGA-EB-A44N-01 3 150903121 150903121 C T MED12L Missense_Mutation p.A500V 0.10 tolerated(0.26) possibly_damaging(0.582) TCGA-EB-A44N-01 3 193209188 193209188 C T ATP13A4 Splice_Site p.X178_splice 0.16 TCGA-EB-A44N-01 3 38347692 38347692 G A SLC22A14 Missense_Mutation p.V59M 0.12 tolerated(0.1) benign(0.346) TCGA-EB-A44N-01 3 38770069 38770069 G A SCN10A Silent p.I868I 0.32 TCGA-EB-A44N-01 3 46415173 46415173 C T CCR5 Silent p.F260F 0.13 TCGA-EB-A44N-01 3 48573845 48573845 G A PFKFB4 Silent p.N228N 0.17 TCGA-EB-A44N-01 3 58084500 58084500 T C FLNB Silent p.L404L 0.15 TCGA-EB-A44N-01 4 156757907 156757907 G A ASIC5 Missense_Mutation p.S390F 0.12 deleterious(0.01) possibly_damaging(0.774) TCGA-EB-A44N-01 4 167020509 167020509 G A TLL1 Missense_Mutation p.G913R 0.22 tolerated(0.19) benign(0.367) TCGA-EB-A44N-01 4 177142627 177142627 G A ASB5 Missense_Mutation p.S170F 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A44N-01 4 38775501 38775501 C T TLR10 Missense_Mutation p.E571K 0.12 tolerated(0.1) benign(0.188) TCGA-EB-A44N-01 4 40123395 40123395 C T N4BP2 Missense_Mutation p.P1222S 0.13 tolerated(0.87) probably_damaging(0.999) TCGA-EB-A44N-01 4 49032867 49032867 G A CWH43 Silent p.E466E 0.08 TCGA-EB-A44N-01 4 5735093 5735093 G A EVC Silent p.L211L 0.14 TCGA-EB-A44N-01 4 70461989 70461989 G A UGT2A1 Silent p.A325A 0.11 TCGA-EB-A44N-01 4 98902346 98902346 G A STPG2 Nonsense_Mutation p.R246* 0.12 TCGA-EB-A44N-01 5 11082853 11082854 CA T CTNND2 Frame_Shift_Del p.A915Rfs*23 0.09 TCGA-EB-A44N-01 5 112770108 112770108 G A TSSK1B Silent p.L143L 0.17 TCGA-EB-A44N-01 5 121739528 121739528 G A SNCAIP Missense_Mutation p.R33Q 0.09 deleterious(0) probably_damaging(0.99) TCGA-EB-A44N-01 5 13794105 13794105 C T DNAH5 Silent p.K2650K 0.33 TCGA-EB-A44N-01 5 140730651 140730651 C T PCDHGB1 Missense_Mutation p.T275I 0.11 tolerated(0.07) possibly_damaging(0.6) TCGA-EB-A44N-01 5 141008818 141008818 G A HDAC3 Nonsense_Mutation p.Q178* 0.16 TCGA-EB-A44N-01 5 161116710 161116710 G A GABRA6 Missense_Mutation p.E200K 0.12 tolerated(0.55) benign(0.422) TCGA-EB-A44N-01 5 21760756 21760756 C T CDH12 Missense_Mutation p.R515Q 0.15 tolerated(0.2) benign(0.005) TCGA-EB-A44N-01 5 40964912 40964912 G A C7 Missense_Mutation p.G607R 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A44N-01 5 41005017 41005017 C T MROH2B Missense_Mutation p.M1290I 0.19 tolerated(0.17) benign(0.067) TCGA-EB-A44N-01 5 41061770 41061770 G A MROH2B Missense_Mutation p.P173S 0.12 tolerated(0.08) probably_damaging(0.943) TCGA-EB-A44N-01 5 41313733 41313733 C T PLCXD3 Missense_Mutation p.E318K 0.17 tolerated_low_confidence(0.16) benign(0.001) TCGA-EB-A44N-01 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.14 TCGA-EB-A44N-01 5 80409703 80409703 G A RASGRF2 Missense_Mutation p.D812N 0.18 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A44N-01 6 136494965 136494965 C T PDE7B Nonsense_Mutation p.R248* 0.21 TCGA-EB-A44N-01 6 29231794 29231794 C T XXbac-BPG308J9.3 RNA 0.08 TCGA-EB-A44N-01 6 31125283 31125283 G A CCHCR1 Missense_Mutation p.P32L 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A44N-01 6 39545914 39545914 C T KIF6 Missense_Mutation p.E367K 0.12 deleterious(0) possibly_damaging(0.902) TCGA-EB-A44N-01 6 56044741 56044741 C T COL21A1 Missense_Mutation p.G92E 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-EB-A44N-01 6 75858109 75858109 C T COL12A1 Missense_Mutation p.E1418K 0.26 probably_damaging(0.998) TCGA-EB-A44N-01 6 94120360 94120360 G A EPHA7 Nonsense_Mutation p.R231* 0.21 TCGA-EB-A44N-01 7 116963113 116963113 G C WNT2 5'UTR 0.23 TCGA-EB-A44N-01 7 129658543 129658543 G A ZC3HC1 Silent p.F490F 0.11 TCGA-EB-A44N-01 7 137339517 137339517 T C DGKI Silent p.K233K 0.13 TCGA-EB-A44N-01 7 140246656 140246656 G A DENND2A Silent p.F707F 0.17 TCGA-EB-A44N-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.12 deleterious(0) probably_damaging(0.967) TCGA-EB-A44N-01 7 141708363 141708363 C T MGAM Missense_Mutation p.P62L 0.14 tolerated(0.14) benign(0.002) TCGA-EB-A44N-01 7 150164190 150164190 G A GIMAP8 Missense_Mutation p.R135Q 0.28 tolerated(0.15) benign(0.148) TCGA-EB-A44N-01 7 150164371 150164371 G A GIMAP8 Silent p.T195T 0.19 TCGA-EB-A44N-01 7 151921636 151921636 C T KMT2C Silent p.G1014G 0.19 TCGA-EB-A44N-01 7 45743216 45743216 C T ADCY1 Silent p.S863S 0.08 TCGA-EB-A44N-01 7 57194300 57194300 C T ZNF479 Silent p.L55L 0.08 TCGA-EB-A44N-01 7 98545883 98545883 C T TRRAP Silent p.L1523L 0.22 TCGA-EB-A44N-01 8 100712025 100712025 C T VPS13B Nonsense_Mutation p.Q2132* 0.09 TCGA-EB-A44N-01 8 10464494 10464494 G A RP1L1 Silent p.L2372L 0.18 TCGA-EB-A44N-01 8 38287422 38287422 G A FGFR1 Missense_Mutation p.H79Y 0.11 tolerated(1) benign(0.004) TCGA-EB-A44N-01 8 39466601 39466601 G A ADAM18 Missense_Mutation p.E77K 0.15 tolerated(0.94) benign(0.198) TCGA-EB-A44N-01 8 41529904 41529904 G A ANK1 Silent p.T1729T 0.18 TCGA-EB-A44N-01 8 69028072 69028072 G T PREX2 Missense_Mutation p.K1077N 0.13 tolerated(0.07) possibly_damaging(0.603) TCGA-EB-A44N-01 9 101156461 101156461 G A GABBR2 Silent p.F458F 0.24 TCGA-EB-A44N-01 9 101812152 101812152 C T COL15A1 Missense_Mutation p.P960L 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A44N-01 9 133364772 133364772 C T ASS1 Silent p.I297I 0.10 TCGA-EB-A44N-01 9 138714853 138714853 G A CAMSAP1 Missense_Mutation p.P552S 0.13 tolerated(0.22) benign(0.009) TCGA-EB-A44N-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.12 TCGA-EB-A44N-01 9 36651786 36651786 C T MELK Missense_Mutation p.A322V 0.17 tolerated(0.06) benign(0.24) TCGA-EB-A44N-01 9 72082882 72082882 G A APBA1 Missense_Mutation p.P447S 0.18 deleterious(0.02) possibly_damaging(0.848) TCGA-EB-A44N-01 9 84532331 84532331 G A SPATA31D5P RNA 0.20 TCGA-EB-A44N-01 9 87482295 87482295 G A NTRK2 Missense_Mutation p.E528K 0.09 deleterious(0) probably_damaging(0.997) TCGA-EB-A44N-01 X 17153524 17153524 C T REPS2 Silent p.V601V 0.33 TCGA-EB-A44N-01 X 2773086 2773086 C T GYG2 Missense_Mutation p.P157L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A44N-01 X 37027666 37027666 C T FAM47C Missense_Mutation p.P395S 0.29 tolerated(0.07) benign(0.115) TCGA-EB-A44N-01 X 40498317 40498317 A G CXorf38 Silent p.L139L 0.21 TCGA-EB-A44N-01 X 77913440 77913440 C T ZCCHC5 Missense_Mutation p.D160N 0.23 tolerated(0.43) benign(0.007) TCGA-EB-A44N-01 Y 14851524 14851524 T A USP9Y Missense_Mutation p.F461L 0.42 deleterious(0) probably_damaging(0.995) TCGA-EB-A44O-01 10 125804247 125804247 C T CHST15 Silent p.G245G 0.70 TCGA-EB-A44O-01 10 135053636 135053636 C T VENTX Silent p.S201S 0.70 TCGA-EB-A44O-01 10 13652101 13652101 C T PRPF18 Silent p.I142I 0.39 TCGA-EB-A44O-01 10 22618176 22618176 C T BMI1 Missense_Mutation p.P229L 0.27 deleterious(0.01) benign(0.031) TCGA-EB-A44O-01 10 27450034 27450034 C T MASTL Missense_Mutation p.P159L 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 10 28250559 28250559 C T ARMC4 Missense_Mutation p.E442K 0.28 deleterious(0.03) probably_damaging(0.968) TCGA-EB-A44O-01 10 28345419 28345419 T C MPP7 Missense_Mutation p.K514R 0.38 tolerated(1) benign(0.007) TCGA-EB-A44O-01 10 28378660 28378660 C T MPP7 Missense_Mutation p.E355K 0.36 tolerated(0.05) probably_damaging(0.997) TCGA-EB-A44O-01 10 30318556 30318556 C T KIAA1462 Missense_Mutation p.R174Q 0.37 deleterious(0.02) probably_damaging(0.973) TCGA-EB-A44O-01 10 37490241 37490241 G A ANKRD30A Missense_Mutation p.G897R 0.32 tolerated(0.35) benign(0.336) TCGA-EB-A44O-01 10 44052973 44052973 C T ZNF239 Silent p.G185G 0.30 TCGA-EB-A44O-01 10 45907730 45907730 G A ALOX5 Missense_Mutation p.G175R 0.31 tolerated(0.3) possibly_damaging(0.73) TCGA-EB-A44O-01 10 46959986 46959986 G A SYT15 3'Flank 0.13 TCGA-EB-A44O-01 10 48429471 48429471 G A GDF10 Missense_Mutation p.P139S 0.35 tolerated(0.09) possibly_damaging(0.811) TCGA-EB-A44O-01 10 50863200 50863200 G A CHAT Missense_Mutation p.G565E 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 10 50953396 50953396 C T OGDHL Silent p.E541E 0.40 TCGA-EB-A44O-01 10 50958897 50958897 C T OGDHL Missense_Mutation p.G295E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 10 52575908 52575908 T A A1CF Missense_Mutation p.Q341H 0.44 tolerated(0.92) benign(0.002) TCGA-EB-A44O-01 10 60150558 60150558 C T TFAM Missense_Mutation p.R159C 0.56 deleterious(0.02) probably_damaging(1) TCGA-EB-A44O-01 10 71392759 71392759 C T C10orf35 Missense_Mutation p.R104C 0.84 deleterious(0) probably_damaging(0.997) TCGA-EB-A44O-01 10 73121771 73121771 G A SLC29A3 Silent p.Q278Q 0.62 TCGA-EB-A44O-01 10 73121772 73121772 G A SLC29A3 Missense_Mutation p.D279N 0.62 tolerated(0.19) possibly_damaging(0.589) TCGA-EB-A44O-01 10 88419664 88419664 C T OPN4 Silent p.T282T 0.67 TCGA-EB-A44O-01 10 90356554 90356554 C T LIPJ Missense_Mutation p.S195L 0.66 tolerated(0.2) benign(0.087) TCGA-EB-A44O-01 10 94223639 94223639 C A IDE Missense_Mutation p.M870I 0.61 tolerated(0.17) benign(0.01) TCGA-EB-A44O-01 10 95720556 95720556 T A PIPSL RNA 0.62 TCGA-EB-A44O-01 10 96698442 96698442 G A CYP2C9 Translation_Start_Site p.M1? 0.68 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A44O-01 11 100064266 100064266 G A CNTN5 Silent p.V585V 0.55 TCGA-EB-A44O-01 11 106810303 106810303 G A GUCY1A2 Silent p.C363C 0.52 TCGA-EB-A44O-01 11 107832686 107832686 C T RAB39A Missense_Mutation p.S81F 0.67 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 11 108302523 108302523 T C C11orf65 Missense_Mutation p.R42G 0.77 deleterious(0.01) possibly_damaging(0.65) TCGA-EB-A44O-01 11 113775607 113775607 C T HTR3B 5'UTR 0.87 TCGA-EB-A44O-01 11 118014667 118014667 G A SCN4B Missense_Mutation p.S115F 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 11 119028986 119028986 C T ABCG4 Missense_Mutation p.L371F 0.67 tolerated(0.69) benign(0.001) TCGA-EB-A44O-01 11 18266923 18266923 C T SAA2 3'UTR 0.39 TCGA-EB-A44O-01 11 1950370 1950370 G A TNNT3 Missense_Mutation p.E35K 0.44 tolerated(0.13) unknown(0) TCGA-EB-A44O-01 11 22397579 22397579 G A SLC17A6 Missense_Mutation p.R409K 0.32 tolerated(1) benign(0.001) TCGA-EB-A44O-01 11 45672090 45672116 GTAGAGGCTCCGCAGGAGGTCGCGGCT - CHST1 In_Frame_Del p.S120_Y128del 0.22 TCGA-EB-A44O-01 11 4703813 4703813 G A OR51E2 Silent p.I43I 0.29 TCGA-EB-A44O-01 11 49597954 49597954 C T RP11-707M1.1 RNA 0.44 TCGA-EB-A44O-01 11 49974046 49974046 C T OR4C13 Silent p.I24I 0.38 TCGA-EB-A44O-01 11 5274477 5274477 C T HBG2 3'UTR 0.46 TCGA-EB-A44O-01 11 55433022 55433022 C G OR4C6 Missense_Mutation p.P127R 0.50 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EB-A44O-01 11 55944371 55944371 C T OR5J2 Missense_Mutation p.S93F 0.65 deleterious(0) possibly_damaging(0.878) TCGA-EB-A44O-01 11 57583408 57583408 C T CTNND1 Silent p.L944L 0.75 TCGA-EB-A44O-01 11 5878832 5878832 C T OR52E8 Missense_Mutation p.G34E 0.36 deleterious(0) probably_damaging(0.984) TCGA-EB-A44O-01 11 61205130 61205130 C T SDHAF2 Missense_Mutation p.P24S 0.60 tolerated(0.1) benign(0.425) TCGA-EB-A44O-01 11 62602941 62602941 C T WDR74 Missense_Mutation p.G194R 0.67 deleterious(0.04) benign(0.024) TCGA-EB-A44O-01 11 6424892 6424892 G A APBB1 Silent p.P294P 0.43 TCGA-EB-A44O-01 11 65273697 65273697 C T MALAT1 RNA 0.74 TCGA-EB-A44O-01 11 67256877 67256877 C T AIP Missense_Mutation p.A140V 0.73 deleterious(0.01) benign(0.021) TCGA-EB-A44O-01 11 6867051 6867051 C T OR10A5 Silent p.I46I 0.40 TCGA-EB-A44O-01 11 7064760 7064760 G A NLRP14 Silent p.G501G 0.31 TCGA-EB-A44O-01 11 7960609 7960609 G A OR10A3 Silent p.I153I 0.41 TCGA-EB-A44O-01 11 8161740 8161740 C T RIC3 Missense_Mutation p.G42E 0.50 tolerated(0.05) probably_damaging(0.998) TCGA-EB-A44O-01 11 88924452 88924452 C T TYR Missense_Mutation p.P301L 0.60 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 11 994111 994111 G T AP2A2 Nonsense_Mutation p.E608* 0.34 TCGA-EB-A44O-01 12 101603399 101603399 G A SLC5A8 Silent p.S76S 0.39 TCGA-EB-A44O-01 12 102158017 102158017 G A GNPTAB Missense_Mutation p.P893L 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 12 108004000 108004000 G A BTBD11 Silent p.L559L 0.50 TCGA-EB-A44O-01 12 108004001 108004001 G A BTBD11 Missense_Mutation p.D560N 0.50 deleterious(0.04) probably_damaging(1) TCGA-EB-A44O-01 12 108603920 108603920 G A WSCD2 Missense_Mutation p.E174K 0.39 deleterious(0.02) benign(0.328) TCGA-EB-A44O-01 12 109629475 109629475 G A ACACB Silent p.V734V 0.22 TCGA-EB-A44O-01 12 109865368 109865368 G A MYO1H Silent p.R626R 0.34 TCGA-EB-A44O-01 12 109937506 109937506 T A UBE3B Missense_Mutation p.L337M 0.42 deleterious(0.03) benign(0.04) TCGA-EB-A44O-01 12 111785386 111785386 C T CUX2 Missense_Mutation p.P1240S 0.38 tolerated(0.1) benign(0.042) TCGA-EB-A44O-01 12 11420704 11420704 C T PRB3 Missense_Mutation p.G160E 0.34 tolerated(0.13) unknown(0) TCGA-EB-A44O-01 12 11420767 11420767 C T PRB3 Missense_Mutation p.G139E 0.28 tolerated(0.2) unknown(0) TCGA-EB-A44O-01 12 119772863 119772863 G A CCDC60 5'UTR 0.62 TCGA-EB-A44O-01 12 120622640 120622640 G A GCN1L1 Silent p.L58L 0.39 TCGA-EB-A44O-01 12 12315147 12315147 G A LRP6 Silent p.L753L 0.45 TCGA-EB-A44O-01 12 124265679 124265679 G A DNAH10 Missense_Mutation p.G164E 0.41 benign(0.007) TCGA-EB-A44O-01 12 130855925 130855925 G A PIWIL1 Intron 0.46 TCGA-EB-A44O-01 12 130898849 130898849 C T RIMBP2 Missense_Mutation p.D825N 0.38 tolerated(0.33) benign(0.04) TCGA-EB-A44O-01 12 14650601 14650601 C T ATF7IP Missense_Mutation p.P1136L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EB-A44O-01 12 18241854 18241854 C T RERGL Missense_Mutation p.G31E 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 12 21329711 21329711 T C SLCO1B1 Missense_Mutation p.Y121H 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 12 25259905 25259905 G A LRMP Missense_Mutation p.E393K 0.26 deleterious(0.04) benign(0.193) TCGA-EB-A44O-01 12 39760939 39760939 A G KIF21A Silent p.L210L 0.38 TCGA-EB-A44O-01 12 39760948 39760948 A C KIF21A Missense_Mutation p.L207V 0.36 tolerated(0.18) possibly_damaging(0.718) TCGA-EB-A44O-01 12 43858402 43858402 G A ADAMTS20 Missense_Mutation p.P501S 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 12 4791444 4791444 C T NDUFA9 Missense_Mutation p.P292S 0.33 tolerated(0.19) benign(0.057) TCGA-EB-A44O-01 12 49422858 49422858 C T KMT2D Missense_Mutation p.R4746Q 0.61 unknown(0) TCGA-EB-A44O-01 12 51590696 51590696 G A POU6F1 5'UTR 0.47 TCGA-EB-A44O-01 12 52981550 52981550 A C KRT72 Missense_Mutation p.L392R 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 12 53509210 53509210 C T SOAT2 Silent p.F160F 0.36 TCGA-EB-A44O-01 12 55038502 55038502 G A DCD Silent p.L110L 0.31 TCGA-EB-A44O-01 12 6128044 6128044 A G VWF Missense_Mutation p.F1514L 0.29 deleterious(0) possibly_damaging(0.796) TCGA-EB-A44O-01 12 6772303 6772303 G A ING4 5'UTR 0.38 TCGA-EB-A44O-01 12 6923438 6923438 G A CD4 Silent p.K115K 0.39 TCGA-EB-A44O-01 12 71155354 71155354 C A PTPRR Missense_Mutation p.G175V 0.32 tolerated(0.06) possibly_damaging(0.717) TCGA-EB-A44O-01 12 81101891 81101891 G A MYF6 Silent p.V131V 0.37 TCGA-EB-A44O-01 12 8375244 8375244 C G FAM90A1 Missense_Mutation p.S190T 0.46 deleterious(0.04) possibly_damaging(0.718) TCGA-EB-A44O-01 12 9317869 9317869 C T PZP Missense_Mutation p.G785S 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44O-01 12 96374447 96374447 C T HAL Missense_Mutation p.R469K 0.46 deleterious(0.01) probably_damaging(0.914) TCGA-EB-A44O-01 13 110434413 110434413 A G IRS2 Silent p.L1330L 0.21 TCGA-EB-A44O-01 13 113731386 113731386 C T MCF2L Silent p.F507F 0.21 TCGA-EB-A44O-01 13 29599885 29599885 G A MTUS2 Silent p.G360G 0.51 TCGA-EB-A44O-01 13 32367040 32367040 G A RXFP2 Missense_Mutation p.G534E 0.24 deleterious(0.01) possibly_damaging(0.771) TCGA-EB-A44O-01 13 48547442 48547442 G A SUCLA2 Missense_Mutation p.P207L 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-EB-A44O-01 13 48547523 48547523 G A SUCLA2 Missense_Mutation p.P180L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 13 84454977 84454977 G A SLITRK1 Silent p.S222S 0.51 TCGA-EB-A44O-01 14 101493169 101493169 G A MIR329-1 RNA 0.63 TCGA-EB-A44O-01 14 106641848 106641848 C T IGHV1-18 Silent p.Q22Q 0.74 TCGA-EB-A44O-01 14 106926373 106926373 G A IGHV3-43 Missense_Mutation p.R57C 0.41 deleterious_low_confidence(0.03) benign(0.246) TCGA-EB-A44O-01 14 22102902 22102902 G A OR10G2 Silent p.L33L 0.65 TCGA-EB-A44O-01 14 24543449 24543449 G T CPNE6 Intron 0.53 TCGA-EB-A44O-01 14 26918129 26918129 A G NOVA1 Missense_Mutation p.I187T 0.62 deleterious(0) unknown(0) TCGA-EB-A44O-01 14 72961876 72961876 G A RGS6 Missense_Mutation p.E291K 0.66 deleterious(0.01) benign(0.25) TCGA-EB-A44O-01 14 73238462 73238462 C T DPF3 Missense_Mutation p.E58K 0.69 deleterious(0.01) possibly_damaging(0.801) TCGA-EB-A44O-01 14 94128992 94128992 C T UNC79 Nonsense_Mutation p.Q2052* 0.81 TCGA-EB-A44O-01 14 96129891 96129891 C T TCL6 RNA 0.67 TCGA-EB-A44O-01 15 20170069 20170069 C T IGHV1OR15-9 Missense_Mutation p.G68E 0.29 deleterious(0.01) probably_damaging(0.917) TCGA-EB-A44O-01 15 25423900 25423900 A C SNORD115-5 RNA 0.33 TCGA-EB-A44O-01 15 25453247 25453247 C T SNORD115-21 RNA 0.35 TCGA-EB-A44O-01 15 34080639 34080639 C T RYR3 Silent p.I3270I 0.38 TCGA-EB-A44O-01 15 37100621 37100621 G A C15orf41 Silent p.T271T 0.28 TCGA-EB-A44O-01 15 40588755 40588755 C T PLCB2 Missense_Mutation p.E523K 0.43 deleterious(0.03) probably_damaging(0.987) TCGA-EB-A44O-01 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.46 TCGA-EB-A44O-01 15 40914977 40914977 C T CASC5 Missense_Mutation p.P865S 0.38 tolerated(0.15) benign(0.19) TCGA-EB-A44O-01 15 41148137 41148137 C T SPINT1 Missense_Mutation p.P405S 0.44 tolerated(0.24) benign(0.1) TCGA-EB-A44O-01 15 42041780 42041780 A C MGA Missense_Mutation p.K1992T 0.39 tolerated_low_confidence(0.07) benign(0.003) TCGA-EB-A44O-01 15 43525429 43525429 A T TGM5 Missense_Mutation p.I708N 0.41 deleterious(0) probably_damaging(0.993) TCGA-EB-A44O-01 15 43814680 43814680 C T MAP1A Missense_Mutation p.R337W 0.38 probably_damaging(0.997) TCGA-EB-A44O-01 15 45453114 45453114 G A DUOX1 Missense_Mutation p.G1261E 0.42 tolerated(0.24) benign(0.025) TCGA-EB-A44O-01 15 48445986 48445986 C T MYEF2 Intron 0.25 TCGA-EB-A44O-01 15 48756111 48756111 C T FBN1 Missense_Mutation p.G1684R 0.40 probably_damaging(1) TCGA-EB-A44O-01 15 51676022 51676022 G A GLDN Silent p.L158L 0.22 TCGA-EB-A44O-01 15 53957769 53957769 C T WDR72 Silent p.K654K 0.26 TCGA-EB-A44O-01 15 58840674 58840674 G A LIPC Silent p.K318K 0.53 TCGA-EB-A44O-01 15 65343882 65343882 C T SLC51B Silent p.L43L 0.36 TCGA-EB-A44O-01 15 65917301 65917301 C T SLC24A1 Missense_Mutation p.P295S 0.44 possibly_damaging(0.857) TCGA-EB-A44O-01 15 68118697 68118697 G A SKOR1 Silent p.E363E 0.44 TCGA-EB-A44O-01 15 74335532 74335532 C T PML Intron 0.30 TCGA-EB-A44O-01 15 77021078 77021078 C T SCAPER Missense_Mutation p.E675K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44O-01 15 79082015 79082038 GGGGCAGGCACAGTACCTGTGCCC - ADAMTS7 Splice_Site p.X391_splice 0.26 TCGA-EB-A44O-01 15 81199168 81199168 G A KIAA1199 Missense_Mutation p.G526S 0.43 deleterious(0.03) probably_damaging(1) TCGA-EB-A44O-01 15 89762196 89762196 C T RLBP1 Missense_Mutation p.G4E 0.38 tolerated_low_confidence(1) benign(0.002) TCGA-EB-A44O-01 15 89762197 89762197 C T RLBP1 Missense_Mutation p.G4R 0.32 tolerated_low_confidence(0.49) benign(0.051) TCGA-EB-A44O-01 15 91423330 91423330 C T FURIN Silent p.I461I 0.37 TCGA-EB-A44O-01 15 91801768 91801768 C T SV2B Missense_Mutation p.P301L 0.35 deleterious(0) probably_damaging(0.968) TCGA-EB-A44O-01 15 97328408 97328408 G A SPATA8 3'UTR 0.46 TCGA-EB-A44O-01 16 12618688 12618688 C T SNX29 Missense_Mutation p.P770S 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A44O-01 16 1393017 1393017 T G BAIAP3 Missense_Mutation p.L457R 0.17 tolerated(0.1) benign(0.018) TCGA-EB-A44O-01 16 1395287 1395287 C T BAIAP3 Missense_Mutation p.P695S 0.54 tolerated(0.81) benign(0.097) TCGA-EB-A44O-01 16 1395288 1395288 C T BAIAP3 Missense_Mutation p.P695L 0.54 tolerated(0.55) benign(0.097) TCGA-EB-A44O-01 16 18851151 18851151 G A SMG1 Missense_Mutation p.R2272C 0.25 deleterious(0) probably_damaging(0.98) TCGA-EB-A44O-01 16 19653728 19653728 G A C16orf62 Missense_Mutation p.E688K 0.49 tolerated(0.09) benign(0.067) TCGA-EB-A44O-01 16 20554584 20554584 C T ACSM2B Missense_Mutation p.E428K 0.34 tolerated(0.1) benign(0) TCGA-EB-A44O-01 16 20803331 20803331 C T ACSM3 Missense_Mutation p.P445L 0.40 deleterious(0.03) probably_damaging(1) TCGA-EB-A44O-01 16 21092985 21092985 C T DNAH3 Missense_Mutation p.E981K 0.48 tolerated(0.53) benign(0.269) TCGA-EB-A44O-01 16 21156549 21156549 G A DNAH3 Missense_Mutation p.T134I 0.28 tolerated_low_confidence(0.15) benign(0.001) TCGA-EB-A44O-01 16 2158925 2158925 G A PKD1 Silent p.A2081A 0.38 TCGA-EB-A44O-01 16 2218111 2218111 G A TRAF7 Missense_Mutation p.R58K 0.48 tolerated_low_confidence(0.12) benign(0.02) TCGA-EB-A44O-01 16 24373172 24373172 C T CACNG3 Silent p.T312T 0.38 TCGA-EB-A44O-01 16 2881908 2881908 C T ZG16B Silent p.A125A 0.49 TCGA-EB-A44O-01 16 30128324 30128324 G A MAPK3 Missense_Mutation p.A303V 0.29 deleterious(0) possibly_damaging(0.525) TCGA-EB-A44O-01 16 31477723 31477723 T G ARMC5 Missense_Mutation p.F774C 0.48 deleterious(0) probably_damaging(0.995) TCGA-EB-A44O-01 16 50357541 50357541 A C BRD7 Nonsense_Mutation p.L467* 0.62 TCGA-EB-A44O-01 16 51175900 51175900 G A SALL1 Missense_Mutation p.P78L 0.68 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A44O-01 16 58301395 58301395 A G CCDC113 Missense_Mutation p.K266E 0.57 tolerated(0.96) benign(0.103) TCGA-EB-A44O-01 16 74725333 74725333 G A MLKL Silent p.I188I 0.67 TCGA-EB-A44O-01 16 85132769 85132769 G A FAM92B 3'UTR 0.73 TCGA-EB-A44O-01 16 8889845 8889845 G A TMEM186 Silent p.F202F 0.33 TCGA-EB-A44O-01 16 90161555 90161555 C T TUBB8P7 RNA 0.35 TCGA-EB-A44O-01 17 10354196 10354196 C T MYH4 Silent p.Q1294Q 0.54 TCGA-EB-A44O-01 17 10354649 10354649 C T MYH4 Missense_Mutation p.E1287K 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44O-01 17 10366895 10366895 G A MYH4 Silent p.T238T 0.69 TCGA-EB-A44O-01 17 10366896 10366896 G A MYH4 Missense_Mutation p.T238I 0.70 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 17 10541402 10541402 G A MYH3 Silent p.I1229I 0.78 TCGA-EB-A44O-01 17 11696890 11696890 C T DNAH9 Missense_Mutation p.S2711L 0.83 benign(0.031) TCGA-EB-A44O-01 17 1399994 1399994 G A INPP5K Missense_Mutation p.P356L 0.67 tolerated(0.67) benign(0) TCGA-EB-A44O-01 17 1399995 1399995 G T INPP5K Missense_Mutation p.P356T 0.67 tolerated(0.63) benign(0.003) TCGA-EB-A44O-01 17 1451683 1451683 T A PITPNA Splice_Site p.X66_splice 0.66 TCGA-EB-A44O-01 17 17053473 17053473 G A MPRIP Missense_Mutation p.G431R 0.63 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 17 17053474 17053474 G A MPRIP Missense_Mutation p.G431E 0.62 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 17 18023348 18023348 C T MYO15A Missense_Mutation p.P412S 0.67 possibly_damaging(0.641) TCGA-EB-A44O-01 17 18668108 18668108 G A FBXW10 Missense_Mutation p.G496E 0.70 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 17 26962191 26962191 G A KIAA0100 Missense_Mutation p.P805L 0.69 tolerated(0.33) benign(0.021) TCGA-EB-A44O-01 17 28643638 28643638 G A TMIGD1 3'UTR 0.64 TCGA-EB-A44O-01 17 3494592 3494592 C T SHPK Missense_Mutation p.D114N 0.64 tolerated(0.65) probably_damaging(0.952) TCGA-EB-A44O-01 17 36093645 36093645 C T HNF1B Nonsense_Mutation p.W238* 0.70 TCGA-EB-A44O-01 17 38122014 38122014 A G GSDMA Missense_Mutation p.D25G 0.75 tolerated(0.1) benign(0.333) TCGA-EB-A44O-01 17 40836130 40836130 C G CNTNAP1 Missense_Mutation p.I82M 0.55 deleterious(0) probably_damaging(0.973) TCGA-EB-A44O-01 17 40836131 40836131 C T CNTNAP1 Missense_Mutation p.R83W 0.55 deleterious(0.02) probably_damaging(0.975) TCGA-EB-A44O-01 17 41903159 41903159 G A MPP3 Silent p.L192L 0.44 TCGA-EB-A44O-01 17 43003571 43003571 T C KIF18B Intron 0.35 TCGA-EB-A44O-01 17 45924715 45924715 C A SP6 Missense_Mutation p.G361W 0.70 deleterious(0.01) possibly_damaging(0.515) TCGA-EB-A44O-01 17 48153021 48153021 C T ITGA3 Silent p.A532A 0.39 TCGA-EB-A44O-01 17 48614448 48614448 C T EPN3 Silent p.S177S 0.43 TCGA-EB-A44O-01 17 61558990 61558990 C T ACE Missense_Mutation p.P337S 0.36 tolerated(0.29) benign(0.208) TCGA-EB-A44O-01 17 66033232 66033232 C T KPNA2 5'UTR 0.42 TCGA-EB-A44O-01 17 67079132 67079132 G A ABCA6 Silent p.L1500L 0.37 TCGA-EB-A44O-01 17 67079133 67079133 G A ABCA6 Silent p.H1499H 0.37 TCGA-EB-A44O-01 17 70643722 70643722 C T SLC39A11 3'UTR 0.44 TCGA-EB-A44O-01 17 70643723 70643723 C T SLC39A11 Silent p.%3D 0.47 TCGA-EB-A44O-01 17 72691364 72691364 G A CD300LF Silent p.S248S 0.40 TCGA-EB-A44O-01 17 76118725 76118725 G A TMC6 Silent p.A396A 0.39 TCGA-EB-A44O-01 17 76511081 76511081 C T DNAH17 Nonsense_Mutation p.W1292* 0.36 TCGA-EB-A44O-01 17 76968644 76968644 G A LGALS3BP Nonsense_Mutation p.Q258* 0.36 TCGA-EB-A44O-01 17 78163600 78163600 C T CARD14 Nonsense_Mutation p.R298* 0.29 TCGA-EB-A44O-01 17 79256034 79256034 G A SLC38A10 Silent p.S152S 0.35 TCGA-EB-A44O-01 17 79651110 79651110 G T HGS Missense_Mutation p.S5I 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A44O-01 18 14779961 14779961 C T ANKRD30B Nonsense_Mutation p.Q475* 0.15 TCGA-EB-A44O-01 18 19996209 19996209 C T CTAGE1 Silent p.R522R 0.45 TCGA-EB-A44O-01 18 28923530 28923530 C T DSG1 Missense_Mutation p.P602L 0.25 deleterious(0.01) benign(0.055) TCGA-EB-A44O-01 18 30092777 30092777 C T WBP11P1 RNA 0.21 TCGA-EB-A44O-01 18 31538298 31538298 C T NOL4 Missense_Mutation p.G381R 0.33 deleterious(0.01) probably_damaging(0.916) TCGA-EB-A44O-01 18 52551593 52551593 G A RAB27B Missense_Mutation p.R90K 0.39 deleterious(0) possibly_damaging(0.705) TCGA-EB-A44O-01 18 57103219 57103219 A T CCBE1 Missense_Mutation p.M381K 0.40 tolerated(0.14) benign(0.013) TCGA-EB-A44O-01 18 59221457 59221457 C T CDH20 Silent p.H645H 0.39 TCGA-EB-A44O-01 18 6311607 6311607 C T L3MBTL4 Silent p.R6R 0.37 TCGA-EB-A44O-01 18 67231792 67231792 C T DOK6 Missense_Mutation p.P46S 0.41 tolerated(0.55) benign(0.023) TCGA-EB-A44O-01 18 70502529 70502529 T G NETO1 Intron 0.35 TCGA-EB-A44O-01 18 76754633 76754633 C T SALL3 Missense_Mutation p.S881L 0.40 deleterious(0.01) possibly_damaging(0.705) TCGA-EB-A44O-01 19 10116265 10116265 C T COL5A3 Missense_Mutation p.G188E 0.77 unknown(0) TCGA-EB-A44O-01 19 110771 110771 C T OR4F17 Silent p.I31I 0.14 TCGA-EB-A44O-01 19 11234012 11234012 C T LDLR Missense_Mutation p.S768F 0.64 deleterious(0) possibly_damaging(0.62) TCGA-EB-A44O-01 19 12866516 12866516 G A BEST2 Missense_Mutation p.D268N 0.65 tolerated(0.2) benign(0.013) TCGA-EB-A44O-01 19 13423526 13423526 G A CACNA1A Missense_Mutation p.T542M 0.29 probably_damaging(0.968) TCGA-EB-A44O-01 19 14247206 14247206 G A ASF1B Silent p.P21P 0.72 TCGA-EB-A44O-01 19 15121771 15121771 C T CCDC105 Missense_Mutation p.T45I 0.75 deleterious(0.01) possibly_damaging(0.632) TCGA-EB-A44O-01 19 15383878 15383878 C A BRD4 Missense_Mutation p.L11F 0.38 unknown(0) TCGA-EB-A44O-01 19 15839576 15839576 C T OR10H2 Silent p.T241T 0.60 TCGA-EB-A44O-01 19 17895003 17895003 C T FCHO1 Missense_Mutation p.P729S 0.70 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44O-01 19 17895004 17895004 C T FCHO1 Missense_Mutation p.P729L 0.70 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 19 3179172 3179172 G T S1PR4 Missense_Mutation p.A128S 0.56 deleterious(0.01) possibly_damaging(0.643) TCGA-EB-A44O-01 19 35176579 35176579 C T ZNF302 3'UTR 0.62 TCGA-EB-A44O-01 19 35176580 35176580 C T ZNF302 3'UTR 0.62 TCGA-EB-A44O-01 19 36276361 36276361 C T ARHGAP33 Silent p.L640L 0.79 TCGA-EB-A44O-01 19 39914883 39914883 C T PLEKHG2 Missense_Mutation p.P1037L 0.80 tolerated_low_confidence(0.06) benign(0.025) TCGA-EB-A44O-01 19 40316715 40316715 G A DYRK1B Silent p.S510S 0.71 TCGA-EB-A44O-01 19 41782115 41782115 C T HNRNPUL1 Missense_Mutation p.P233L 0.81 deleterious(0.02) unknown(0) TCGA-EB-A44O-01 19 42090748 42090748 T C CEACAM21 Missense_Mutation p.L250P 0.88 tolerated(0.06) benign(0.014) TCGA-EB-A44O-01 19 42857929 42857929 C T MEGF8 Missense_Mutation p.A1188V 0.73 deleterious(0.01) possibly_damaging(0.674) TCGA-EB-A44O-01 19 43372489 43372489 C T PSG1 Missense_Mutation p.R336K 0.72 tolerated(1) benign(0.009) TCGA-EB-A44O-01 19 43979659 43979659 T A PHLDB3 Missense_Mutation p.Y609F 0.79 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A44O-01 19 44118464 44118464 G A ZNF428 5'UTR 0.79 TCGA-EB-A44O-01 19 4941617 4941617 C T UHRF1 RNA 0.69 TCGA-EB-A44O-01 19 50204796 50204796 G A CPT1C Missense_Mutation p.D200N 0.94 tolerated(0.38) benign(0.006) TCGA-EB-A44O-01 19 52031437 52031437 G A SIGLEC6 Silent p.F361F 0.77 TCGA-EB-A44O-01 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.75 deleterious(0.03) benign(0.227) TCGA-EB-A44O-01 19 5831597 5831597 G A FUT6 Missense_Mutation p.R328C 0.72 tolerated(0.07) benign(0.117) TCGA-EB-A44O-01 19 58578414 58578414 C T ZNF135 Missense_Mutation p.H212Y 0.80 tolerated(0.9) benign(0.009) TCGA-EB-A44O-01 19 7615505 7615505 C T PNPLA6 Silent p.G692G 0.91 TCGA-EB-A44O-01 19 7831617 7831617 G A CLEC4M Missense_Mutation p.R287Q 0.88 tolerated(0.09) probably_damaging(0.994) TCGA-EB-A44O-01 19 8564138 8564138 G A PRAM1 Missense_Mutation p.S185F 0.84 tolerated(0.72) benign(0.005) TCGA-EB-A44O-01 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.70 tolerated(0.13) benign(0.153) TCGA-EB-A44O-01 19 8841890 8841890 C T OR2Z1 Missense_Mutation p.P167L 0.70 deleterious(0) possibly_damaging(0.828) TCGA-EB-A44O-01 19 9090102 9090102 G A MUC16 Silent p.T571T 0.85 TCGA-EB-A44O-01 19 9236693 9236693 G A OR7G3 Missense_Mutation p.H312Y 0.89 tolerated_low_confidence(0.18) benign(0) TCGA-EB-A44O-01 19 9453517 9453517 C T ZNF559 Missense_Mutation p.P464S 0.90 deleterious(0.02) probably_damaging(0.98) TCGA-EB-A44O-01 1 110162859 110162859 C T AMPD2 5'Flank 0.70 TCGA-EB-A44O-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.66 deleterious(0.01) benign(0.045) TCGA-EB-A44O-01 1 117078713 117078713 G A CD58 Missense_Mutation p.R168C 0.64 tolerated(0.06) benign(0.398) TCGA-EB-A44O-01 1 118165806 118165806 C T FAM46C Nonsense_Mutation p.Q106* 0.64 TCGA-EB-A44O-01 1 12343269 12343269 G A VPS13D Missense_Mutation p.E1704K 0.77 benign(0.004) TCGA-EB-A44O-01 1 151112551 151112551 G A SEMA6C Missense_Mutation p.S45F 0.32 deleterious(0.01) possibly_damaging(0.683) TCGA-EB-A44O-01 1 151774170 151774170 C T LINGO4 Silent p.Q337Q 0.84 TCGA-EB-A44O-01 1 152188211 152188211 C T HRNR Missense_Mutation p.G1965D 0.11 unknown(0) TCGA-EB-A44O-01 1 152282145 152282145 C T FLG Silent p.Q1739Q 0.85 TCGA-EB-A44O-01 1 154544235 154544235 C T CHRNB2 Silent p.I312I 0.79 TCGA-EB-A44O-01 1 155217952 155217952 G A FAM189B Silent p.S574S 0.75 TCGA-EB-A44O-01 1 157512925 157512925 G A FCRL5 Missense_Mutation p.P283S 0.82 tolerated(0.16) benign(0.015) TCGA-EB-A44O-01 1 158064458 158064458 G T KIRREL Missense_Mutation p.V608L 0.80 deleterious(0) benign(0.301) TCGA-EB-A44O-01 1 158617450 158617450 C T SPTA1 Missense_Mutation p.D1259N 0.83 tolerated(0.1) probably_damaging(0.94) TCGA-EB-A44O-01 1 16070999 16070999 C T TMEM82 Silent p.F227F 0.83 TCGA-EB-A44O-01 1 16725252 16725252 C T SPATA21 3'UTR 0.75 TCGA-EB-A44O-01 1 17706476 17706476 G A PADI6 RNA 0.71 TCGA-EB-A44O-01 1 181727944 181727944 C T CACNA1E Silent p.I1515I 0.80 TCGA-EB-A44O-01 1 196963330 196963330 C T CFHR5 Missense_Mutation p.S184L 0.78 deleterious(0) benign(0) TCGA-EB-A44O-01 1 201187757 201187757 C T IGFN1 Missense_Mutation p.S3290L 0.82 possibly_damaging(0.864) TCGA-EB-A44O-01 1 203185937 203185937 C T CHIT1 3'UTR 0.73 TCGA-EB-A44O-01 1 204408122 204408122 C T PIK3C2B Missense_Mutation p.D1153N 0.67 deleterious(0) probably_damaging(0.914) TCGA-EB-A44O-01 1 2082309 2082309 A G PRKCZ Silent p.R256R 0.88 TCGA-EB-A44O-01 1 22902734 22902734 G A EPHA8 Missense_Mutation p.E62K 0.76 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A44O-01 1 233091382 233091382 C T NTPCR Silent p.T38T 0.96 TCGA-EB-A44O-01 1 233515384 233515384 C T MLK4 Missense_Mutation p.P878S 0.74 tolerated(0.09) benign(0.043) TCGA-EB-A44O-01 1 234529414 234529414 G A TARBP1 Silent p.I1471I 0.74 TCGA-EB-A44O-01 1 241964519 241964519 G A WDR64 3'UTR 0.91 TCGA-EB-A44O-01 1 247588812 247588812 G A NLRP3 Silent p.K689K 0.77 TCGA-EB-A44O-01 1 247769582 247769582 A C OR2G3 Missense_Mutation p.E232A 0.78 tolerated(0.76) benign(0.01) TCGA-EB-A44O-01 1 247902182 247902182 C T OR14K1 Missense_Mutation p.S89F 0.71 tolerated(0.05) benign(0.028) TCGA-EB-A44O-01 1 26795609 26795609 C A DHDDS Missense_Mutation p.T331N 0.83 tolerated_low_confidence(0.45) benign(0.087) TCGA-EB-A44O-01 1 32193052 32193052 G A BAI2 Missense_Mutation p.P1576L 0.80 tolerated(0.17) benign(0) TCGA-EB-A44O-01 1 32203093 32203093 G A BAI2 Silent p.F972F 0.87 TCGA-EB-A44O-01 1 34076762 34076762 C T CSMD2 Missense_Mutation p.M2034I 0.56 tolerated(0.11) benign(0.042) TCGA-EB-A44O-01 1 34158591 34158591 G A CSMD2 Missense_Mutation p.P1291S 0.83 deleterious(0.05) benign(0.261) TCGA-EB-A44O-01 1 34383841 34383841 G A CSMD2 Silent p.F218F 0.31 TCGA-EB-A44O-01 1 43119538 43119538 G A CCDC30 Missense_Mutation p.E731K 0.78 tolerated(0.32) benign(0.004) TCGA-EB-A44O-01 1 46654695 46654695 G A POMGNT1 Intron 0.65 TCGA-EB-A44O-01 1 47512160 47512160 G A CYP4X1 Silent p.S365S 0.82 TCGA-EB-A44O-01 1 55167895 55167895 G A MROH7 Missense_Mutation p.E1140K 0.89 deleterious(0) possibly_damaging(0.897) TCGA-EB-A44O-01 1 62593688 62593688 A G INADL Silent p.G1696G 0.77 TCGA-EB-A44O-01 1 62910742 62910742 G C USP1 Missense_Mutation p.Q297H 0.69 deleterious(0.05) benign(0.03) TCGA-EB-A44O-01 1 75037423 75037423 C T C1orf173 Missense_Mutation p.G1324E 0.64 tolerated(0.13) benign(0.129) TCGA-EB-A44O-01 1 7724638 7724638 C T CAMTA1 Silent p.F677F 0.81 TCGA-EB-A44O-01 1 77557973 77557973 G A PIGK 3'UTR 0.86 TCGA-EB-A44O-01 1 9910679 9910679 G A CTNNBIP1 3'UTR 0.78 TCGA-EB-A44O-01 20 10273826 10273826 G A SNAP25 Missense_Mutation p.E61K 0.32 deleterious(0.02) benign(0.037) TCGA-EB-A44O-01 20 16348248 16348248 G A KIF16B Missense_Mutation p.S1241F 0.42 deleterious_low_confidence(0) benign(0.202) TCGA-EB-A44O-01 20 25201907 25201907 C T ENTPD6 Missense_Mutation p.P328L 0.39 deleterious(0.04) benign(0.367) TCGA-EB-A44O-01 20 2593905 2593905 C T TMC2 Silent p.F603F 0.41 TCGA-EB-A44O-01 20 31622896 31622896 C T BPIFB6 Silent p.P154P 0.20 TCGA-EB-A44O-01 20 32354689 32354689 C T ZNF341 Missense_Mutation p.P412S 0.43 tolerated(0.1) benign(0.392) TCGA-EB-A44O-01 20 32354690 32354690 C T ZNF341 Missense_Mutation p.P412L 0.43 deleterious(0.03) possibly_damaging(0.474) TCGA-EB-A44O-01 20 34129830 34129830 C T ERGIC3 5'UTR 0.55 TCGA-EB-A44O-01 20 3677862 3677862 C G SIGLEC1 Silent p.L750L 0.29 TCGA-EB-A44O-01 20 37380858 37380858 C T ACTR5 Silent p.Y230Y 0.33 TCGA-EB-A44O-01 20 37570695 37570695 C T FAM83D Missense_Mutation p.L223F 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 20 40034120 40034120 G A CHD6 Missense_Mutation p.P2421S 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 20 41076933 41076933 C T PTPRT Missense_Mutation p.G496E 0.44 tolerated(0.1) benign(0.002) TCGA-EB-A44O-01 20 45131133 45131133 C T ZNF334 Missense_Mutation p.R282Q 0.35 tolerated(0.42) probably_damaging(0.988) TCGA-EB-A44O-01 20 45644851 45644851 C T EYA2 Silent p.S110S 0.47 TCGA-EB-A44O-01 20 49225200 49225200 C T FAM65C Missense_Mutation p.E250K 0.39 deleterious(0) possibly_damaging(0.896) TCGA-EB-A44O-01 20 56934720 56934720 C T RAB22A Silent p.L182L 0.43 TCGA-EB-A44O-01 20 57769071 57769071 T G ZNF831 Silent p.G999G 0.23 TCGA-EB-A44O-01 20 5843778 5843778 G A C20orf196 Missense_Mutation p.R96Q 0.38 deleterious(0.04) possibly_damaging(0.74) TCGA-EB-A44O-01 20 8689338 8689338 G A PLCB1 Missense_Mutation p.E397K 0.29 deleterious(0) benign(0.222) TCGA-EB-A44O-01 20 9546766 9546766 G A PAK7 Missense_Mutation p.S419F 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A44O-01 20 9561395 9561395 G A PAK7 Silent p.S129S 0.37 TCGA-EB-A44O-01 21 10862996 10862996 G A IGHV1OR21-1 Missense_Mutation p.A98T 0.17 deleterious(0.04) possibly_damaging(0.549) TCGA-EB-A44O-01 21 10998270 10998270 C T TPTE RNA 0.34 TCGA-EB-A44O-01 21 15323422 15323422 T A ANKRD20A11P RNA 0.48 TCGA-EB-A44O-01 21 27938590 27938590 G A CYYR1 Silent p.I57I 0.35 TCGA-EB-A44O-01 21 34066550 34066550 T C SYNJ1 Silent p.Q298Q 0.42 TCGA-EB-A44O-01 21 38597842 38597842 G A DSCR3 3'UTR 0.27 TCGA-EB-A44O-01 21 38597843 38597843 G A DSCR3 3'UTR 0.27 TCGA-EB-A44O-01 21 38597844 38597844 G T DSCR3 3'UTR 0.27 TCGA-EB-A44O-01 21 39087408 39087408 C T KCNJ6 Missense_Mutation p.D18N 0.42 tolerated_low_confidence(0.77) benign(0) TCGA-EB-A44O-01 21 43319386 43319386 G A C2CD2 Missense_Mutation p.S549F 0.36 tolerated(0.16) benign(0.006) TCGA-EB-A44O-01 21 45706903 45706903 C T AIRE Missense_Mutation p.A117V 0.31 deleterious(0.05) benign(0.14) TCGA-EB-A44O-01 22 16256638 16256638 C T POTEH 3'UTR 0.18 TCGA-EB-A44O-01 22 16449110 16449110 G A OR11H1 Missense_Mutation p.S232F 0.28 deleterious(0) possibly_damaging(0.68) TCGA-EB-A44O-01 22 20940083 20940083 C T MED15 Missense_Mutation p.P734S 0.33 deleterious(0) probably_damaging(0.988) TCGA-EB-A44O-01 22 20940084 20940084 C T MED15 Missense_Mutation p.P734L 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-EB-A44O-01 22 21998528 21998528 G A SDF2L1 3'UTR 0.39 TCGA-EB-A44O-01 22 23114864 23114864 A T IGLV3-12 Missense_Mutation p.I46F 0.35 tolerated(0.08) possibly_damaging(0.852) TCGA-EB-A44O-01 22 29683075 29683075 C T EWSR1 Nonsense_Mutation p.Q255* 0.37 TCGA-EB-A44O-01 22 36545094 36545094 C T APOL3 Intron 0.32 TCGA-EB-A44O-01 22 37154423 37154423 G A IFT27 Missense_Mutation p.H165Y 0.38 tolerated(1) benign(0.003) TCGA-EB-A44O-01 22 37154424 37154424 G T IFT27 Missense_Mutation p.F164L 0.38 deleterious(0.04) possibly_damaging(0.593) TCGA-EB-A44O-01 22 37334178 37334178 C T CSF2RB Silent p.S776S 0.36 TCGA-EB-A44O-01 22 37533707 37533707 C T IL2RB Missense_Mutation p.E153K 0.43 tolerated(0.86) benign(0) TCGA-EB-A44O-01 22 37770740 37770740 C T ELFN2 Missense_Mutation p.E279K 0.51 tolerated(0.88) benign(0.03) TCGA-EB-A44O-01 22 40343132 40343132 G A GRAP2 Missense_Mutation p.D8N 0.35 deleterious(0) probably_damaging(0.996) TCGA-EB-A44O-01 22 40417759 40417759 C T FAM83F Silent p.S415S 0.33 TCGA-EB-A44O-01 22 50720628 50720628 G A PLXNB2 Silent p.S1034S 0.43 TCGA-EB-A44O-01 22 50899620 50899620 C T SBF1 Missense_Mutation p.D979N 0.35 deleterious(0.01) possibly_damaging(0.466) TCGA-EB-A44O-01 2 100209921 100209921 G A AFF3 Silent p.I759I 0.39 TCGA-EB-A44O-01 2 102793137 102793137 G A IL1R1 Missense_Mutation p.R543Q 0.31 tolerated(0.6) benign(0.001) TCGA-EB-A44O-01 2 103040854 103040854 C T IL18RAP Missense_Mutation p.P187S 0.29 tolerated(0.27) benign(0.041) TCGA-EB-A44O-01 2 103322324 103322324 G A SLC9A2 Missense_Mutation p.R666Q 0.24 deleterious(0.04) possibly_damaging(0.801) TCGA-EB-A44O-01 2 108875272 108875272 G A SULT1C3 Silent p.E203E 0.50 TCGA-EB-A44O-01 2 113885249 113885249 C T IL1RN Intron 0.53 TCGA-EB-A44O-01 2 121746841 121746841 G A GLI2 Silent p.V1117V 0.39 TCGA-EB-A44O-01 2 121989456 121989456 G A TFCP2L1 Silent p.I429I 0.33 TCGA-EB-A44O-01 2 137814383 137814383 G A THSD7B Missense_Mutation p.R178Q 0.34 tolerated(1) possibly_damaging(0.846) TCGA-EB-A44O-01 2 137814384 137814384 G A THSD7B Silent p.R178R 0.33 TCGA-EB-A44O-01 2 138030160 138030160 G A THSD7B Missense_Mutation p.G775E 0.42 deleterious(0) probably_damaging(0.969) TCGA-EB-A44O-01 2 139428970 139428970 C T NXPH2 Missense_Mutation p.G106E 0.30 deleterious(0.02) probably_damaging(1) TCGA-EB-A44O-01 2 143913059 143913059 T A ARHGAP15 5'UTR 0.33 TCGA-EB-A44O-01 2 152544146 152544146 G A NEB Silent p.T839T 0.48 TCGA-EB-A44O-01 2 152554150 152554150 C T NEB Missense_Mutation p.E389K 0.49 possibly_damaging(0.485) TCGA-EB-A44O-01 2 166223779 166223779 G A SCN2A Silent p.G1191G 0.18 TCGA-EB-A44O-01 2 166894377 166894377 C T SCN1A Nonsense_Mutation p.W952* 0.34 TCGA-EB-A44O-01 2 168099259 168099259 C T XIRP2 Missense_Mutation p.P453S 0.46 possibly_damaging(0.604) TCGA-EB-A44O-01 2 170662013 170662013 G A SSB Silent p.R32R 0.29 TCGA-EB-A44O-01 2 171240255 171240255 C T MYO3B Silent p.S407S 0.37 TCGA-EB-A44O-01 2 177036942 177036942 C T HOXD3 Silent p.L413L 0.44 TCGA-EB-A44O-01 2 17897484 17897484 T C SMC6 Missense_Mutation p.Q465R 0.33 tolerated(0.18) benign(0.007) TCGA-EB-A44O-01 2 179411202 179411202 C T TTN Missense_Mutation p.R31619Q 0.41 TCGA-EB-A44O-01 2 179430961 179430961 A C TTN Missense_Mutation p.F26633C 0.40 TCGA-EB-A44O-01 2 179455156 179455156 A G TTN Silent p.F20432F 0.46 TCGA-EB-A44O-01 2 179489212 179489212 G A TTN Missense_Mutation p.S14932F 0.44 TCGA-EB-A44O-01 2 179599569 179599569 C T TTN Missense_Mutation p.V5028I 0.47 TCGA-EB-A44O-01 2 179612465 179612465 G A TTN Intron 0.35 TCGA-EB-A44O-01 2 182358123 182358123 G A ITGA4 Missense_Mutation p.G409R 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 2 187627173 187627173 G A FAM171B Missense_Mutation p.D702N 0.57 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 2 1921109 1921109 G A MYT1L Missense_Mutation p.P494S 0.37 tolerated(0.71) benign(0.006) TCGA-EB-A44O-01 2 196718129 196718129 C T DNAH7 Missense_Mutation p.D2907N 0.21 deleterious(0.01) possibly_damaging(0.558) TCGA-EB-A44O-01 2 196825484 196825484 T C DNAH7 Silent p.E797E 0.34 TCGA-EB-A44O-01 2 201305434 201305434 C T SPATS2L Missense_Mutation p.R239C 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 2 204599767 204599767 C T CD28 3'UTR 0.38 TCGA-EB-A44O-01 2 209179989 209179989 G A PIKFYVE Nonsense_Mutation p.W633* 0.43 TCGA-EB-A44O-01 2 21225563 21225563 G A APOB Missense_Mutation p.S4244F 0.38 benign(0.015) TCGA-EB-A44O-01 2 21233793 21233793 G A APOB Missense_Mutation p.L1983F 0.37 benign(0.011) TCGA-EB-A44O-01 2 21237341 21237341 G A APOB Missense_Mutation p.P1274L 0.36 probably_damaging(0.997) TCGA-EB-A44O-01 2 215812267 215812267 A T ABCA12 Missense_Mutation p.L2373H 0.55 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 2 215843107 215843107 G A ABCA12 Silent p.S1687S 0.32 TCGA-EB-A44O-01 2 219290484 219290484 C T VIL1 Silent p.V99V 0.31 TCGA-EB-A44O-01 2 219290485 219290485 C T VIL1 Nonsense_Mutation p.Q100* 0.30 TCGA-EB-A44O-01 2 228157962 228157962 G A COL4A3 Missense_Mutation p.G1089D 0.35 unknown(0) TCGA-EB-A44O-01 2 228884218 228884218 A T SPHKAP Missense_Mutation p.V451D 0.35 deleterious(0) probably_damaging(0.986) TCGA-EB-A44O-01 2 230377595 230377595 C T DNER Missense_Mutation p.D351N 0.40 tolerated(0.22) benign(0.049) TCGA-EB-A44O-01 2 233198666 233198666 C T DIS3L2 Silent p.V709V 0.35 TCGA-EB-A44O-01 2 238296739 238296739 T C COL6A3 Silent p.V266V 0.48 TCGA-EB-A44O-01 2 242265483 242265483 C T SEPT2 Nonsense_Mutation p.R29* 0.41 TCGA-EB-A44O-01 2 242757862 242757862 G A NEU4 Missense_Mutation p.E328K 0.25 tolerated(0.69) benign(0.011) TCGA-EB-A44O-01 2 242757947 242757947 G A NEU4 Missense_Mutation p.G356D 0.36 tolerated(0.55) possibly_damaging(0.51) TCGA-EB-A44O-01 2 24307208 24307208 A T TP53I3 5'UTR 0.24 TCGA-EB-A44O-01 2 24413519 24413519 C T FAM228A 3'UTR 0.50 TCGA-EB-A44O-01 2 27695224 27695224 G A IFT172 Silent p.L473L 0.51 TCGA-EB-A44O-01 2 31637536 31637536 C T XDH 5'UTR 0.47 TCGA-EB-A44O-01 2 32772969 32772969 A T BIRC6 Missense_Mutation p.Y4288F 0.43 probably_damaging(0.98) TCGA-EB-A44O-01 2 3502615 3502615 G A ADI1 3'UTR 0.48 TCGA-EB-A44O-01 2 3502616 3502616 G A ADI1 3'UTR 0.48 TCGA-EB-A44O-01 2 3687883 3687883 C T COLEC11 Missense_Mutation p.S111F 0.31 deleterious(0.03) benign(0.35) TCGA-EB-A44O-01 2 70901909 70901909 C T ADD2 Missense_Mutation p.D548N 0.43 tolerated(0.49) benign(0.032) TCGA-EB-A44O-01 2 73448969 73448969 C T SMYD5 Missense_Mutation p.R185C 0.52 tolerated(0.06) possibly_damaging(0.809) TCGA-EB-A44O-01 2 73677047 73677047 C T ALMS1 Silent p.D1130D 0.38 TCGA-EB-A44O-01 2 73677048 73677048 C T ALMS1 Nonsense_Mutation p.Q1131* 0.38 TCGA-EB-A44O-01 2 85923104 85923104 G A GNLY Silent p.Q60Q 0.50 TCGA-EB-A44O-01 2 8871120 8871120 G A KIDINS220 Silent p.T1682T 0.52 TCGA-EB-A44O-01 2 8871981 8871981 G A KIDINS220 Silent p.S1395S 0.45 TCGA-EB-A44O-01 2 95815791 95815791 G A ZNF514 Missense_Mutation p.L147F 0.35 tolerated(0.7) benign(0.125) TCGA-EB-A44O-01 2 97866208 97866208 G T ANKRD36 Missense_Mutation p.D935Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-EB-A44O-01 3 101298752 101298752 C T PCNP Silent p.L61L 0.37 TCGA-EB-A44O-01 3 108100366 108100366 C T MYH15 3'UTR 0.38 TCGA-EB-A44O-01 3 111317014 111317014 C T CD96 Silent p.I301I 0.38 TCGA-EB-A44O-01 3 113672800 113672800 C T ZDHHC23 Silent p.L139L 0.42 TCGA-EB-A44O-01 3 11600048 11600048 G A VGLL4 Silent p.S291S 0.39 TCGA-EB-A44O-01 3 122004029 122004029 G A CASR Silent p.V1086V 0.38 TCGA-EB-A44O-01 3 122634333 122634333 C T SEMA5B Missense_Mutation p.G702S 0.36 deleterious(0.01) probably_damaging(1) TCGA-EB-A44O-01 3 124998088 124998088 G A ZNF148 Missense_Mutation p.L155F 0.34 tolerated(0.07) probably_damaging(0.973) TCGA-EB-A44O-01 3 126916150 126916150 C T C3orf56 Missense_Mutation p.R208C 0.38 tolerated(0.23) possibly_damaging(0.835) TCGA-EB-A44O-01 3 134256013 134256013 C T CEP63 Missense_Mutation p.S153L 0.40 deleterious(0) probably_damaging(0.989) TCGA-EB-A44O-01 3 148458807 148458807 G A AGTR1 5'UTR 0.42 TCGA-EB-A44O-01 3 148601470 148601470 G A CPA3 Silent p.T283T 0.61 TCGA-EB-A44O-01 3 14949147 14949147 G A FGD5 Missense_Mutation p.E1089K 0.42 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 3 15297906 15297906 T A SH3BP5 Intron 0.38 TCGA-EB-A44O-01 3 155232632 155232632 C T PLCH1 Silent p.R492R 0.58 TCGA-EB-A44O-01 3 155232633 155232633 C T PLCH1 Missense_Mutation p.R492K 0.58 tolerated(0.49) probably_damaging(0.997) TCGA-EB-A44O-01 3 15563124 15563124 G A COLQ Silent p.V3V 0.50 TCGA-EB-A44O-01 3 156422503 156422503 T C TIPARP Silent p.F519F 0.34 TCGA-EB-A44O-01 3 159606666 159606666 G A IQCJ-SCHIP1 Missense_Mutation p.D494N 0.57 tolerated(0.11) probably_damaging(0.996) TCGA-EB-A44O-01 3 169540534 169540534 C T LRRIQ4 Silent p.L275L 0.29 TCGA-EB-A44O-01 3 172835152 172835152 C T SPATA16 Missense_Mutation p.E124K 0.37 deleterious(0) possibly_damaging(0.486) TCGA-EB-A44O-01 3 182853510 182853510 C T LAMP3 Missense_Mutation p.G371E 0.46 deleterious(0) probably_damaging(0.992) TCGA-EB-A44O-01 3 183909041 183909041 G A ABCF3 Missense_Mutation p.V523M 0.38 deleterious(0) possibly_damaging(0.635) TCGA-EB-A44O-01 3 194081266 194081266 G A LRRC15 Silent p.F175F 0.44 TCGA-EB-A44O-01 3 32932868 32932868 C T TRIM71 Silent p.I724I 0.32 TCGA-EB-A44O-01 3 33135768 33135768 C T TMPPE 5'UTR 0.31 TCGA-EB-A44O-01 3 36884182 36884182 G A TRANK1 Silent p.F1693F 0.33 TCGA-EB-A44O-01 3 38519889 38519889 C T ACVR2B Silent p.S182S 0.35 TCGA-EB-A44O-01 3 38936095 38936095 C T SCN11A Missense_Mutation p.E922K 0.37 tolerated(0.39) probably_damaging(0.957) TCGA-EB-A44O-01 3 38951638 38951638 C T SCN11A Silent p.T340T 0.29 TCGA-EB-A44O-01 3 40567279 40567279 A C ZNF621 5'UTR 0.46 TCGA-EB-A44O-01 3 42729787 42729787 G A KLHL40 Missense_Mutation p.D436N 0.41 tolerated(0.05) benign(0.024) TCGA-EB-A44O-01 3 42735229 42735229 G A HHATL Silent p.T376T 0.52 TCGA-EB-A44O-01 3 42956562 42956562 G A ZNF662 Missense_Mutation p.E359K 0.31 tolerated(0.13) probably_damaging(0.997) TCGA-EB-A44O-01 3 45127279 45127279 A G CDCP1 Silent p.L788L 0.43 TCGA-EB-A44O-01 3 47084094 47084094 G A SETD2 Nonsense_Mutation p.R2399* 0.36 TCGA-EB-A44O-01 3 47461025 47461025 G A SCAP Missense_Mutation p.S578F 0.34 deleterious(0) possibly_damaging(0.498) TCGA-EB-A44O-01 3 48460709 48460709 G A PLXNB1 Missense_Mutation p.P926S 0.12 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 3 49691442 49691442 C T BSN Missense_Mutation p.P1485S 0.37 unknown(0) TCGA-EB-A44O-01 3 50255423 50255423 C T SLC38A3 RNA 0.39 TCGA-EB-A44O-01 3 52485525 52485525 G A TNNC1 Silent p.I112I 0.33 TCGA-EB-A44O-01 3 58118610 58118610 G A FLNB Missense_Mutation p.G1520E 0.38 deleterious(0) probably_damaging(0.911) TCGA-EB-A44O-01 3 73433930 73433930 G A PDZRN3 Missense_Mutation p.S596F 0.33 deleterious(0.01) benign(0.139) TCGA-EB-A44O-01 3 7503379 7503379 C T GRM7 Silent p.I495I 0.34 TCGA-EB-A44O-01 3 77542409 77542409 C T ROBO2 Missense_Mutation p.L244F 0.38 deleterious(0.02) possibly_damaging(0.849) TCGA-EB-A44O-01 3 77645799 77645799 G A ROBO2 Missense_Mutation p.D934N 0.38 tolerated(0.18) possibly_damaging(0.539) TCGA-EB-A44O-01 3 9746673 9746673 C T CPNE9 Silent p.F85F 0.43 TCGA-EB-A44O-01 4 102751345 102751345 C T BANK1 Nonsense_Mutation p.Q151* 0.46 TCGA-EB-A44O-01 4 103949903 103949903 C T SLC9B2 Splice_Site p.X464_splice 0.29 TCGA-EB-A44O-01 4 106155139 106155139 C T TET2 Silent p.L14L 0.33 TCGA-EB-A44O-01 4 106155140 106155140 T C TET2 Missense_Mutation p.L14P 0.33 deleterious(0) probably_damaging(0.99) TCGA-EB-A44O-01 4 106155236 106155236 C T TET2 Missense_Mutation p.P46L 0.44 tolerated(0.29) benign(0.002) TCGA-EB-A44O-01 4 107956795 107956795 G A DKK2 5'UTR 0.47 TCGA-EB-A44O-01 4 108575937 108575937 G A PAPSS1 Missense_Mutation p.R339C 0.40 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A44O-01 4 110447419 110447419 C T SEC24B Silent p.V943V 0.36 TCGA-EB-A44O-01 4 11401503 11401503 C T HS3ST1 Missense_Mutation p.D43N 0.42 tolerated(0.46) benign(0.001) TCGA-EB-A44O-01 4 114823339 114823339 G A ARSJ 3'UTR 0.39 TCGA-EB-A44O-01 4 119252906 119252906 G A PRSS12 Silent p.A312A 0.47 TCGA-EB-A44O-01 4 119951685 119951685 G A SYNPO2 Missense_Mutation p.M585I 0.40 tolerated(0.41) benign(0.003) TCGA-EB-A44O-01 4 122853476 122853476 C T TRPC3 Missense_Mutation p.E313K 0.39 tolerated(0.4) benign(0.129) TCGA-EB-A44O-01 4 123202732 123202732 C T KIAA1109 Missense_Mutation p.S2947F 0.38 benign(0.11) TCGA-EB-A44O-01 4 126411327 126411327 C T FAT4 Silent p.T4450T 0.50 TCGA-EB-A44O-01 4 138442314 138442314 G A PCDH18 Missense_Mutation p.P1093S 0.45 tolerated(0.16) probably_damaging(0.999) TCGA-EB-A44O-01 4 141590897 141590897 G A TBC1D9 Missense_Mutation p.A443V 0.33 tolerated(0.4) benign(0.054) TCGA-EB-A44O-01 4 144918732 144918732 C T GYPB Silent p.T77T 0.25 TCGA-EB-A44O-01 4 146071774 146071774 G A OTUD4 Missense_Mutation p.P319S 0.27 tolerated(0.32) benign(0.015) TCGA-EB-A44O-01 4 149357477 149357477 G A NR3C2 Missense_Mutation p.A179V 0.41 deleterious_low_confidence(0.04) benign(0.036) TCGA-EB-A44O-01 4 153897274 153897274 C T FHDC1 Missense_Mutation p.S944F 0.42 deleterious(0) probably_damaging(0.94) TCGA-EB-A44O-01 4 157689089 157689089 G A PDGFC Missense_Mutation p.R253C 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 4 164247735 164247735 T A NPY1R 5'UTR 0.40 TCGA-EB-A44O-01 4 166243303 166243303 T A KLHL2 3'UTR 0.45 TCGA-EB-A44O-01 4 169317203 169317203 G A DDX60L Silent p.F1188F 0.58 TCGA-EB-A44O-01 4 169321994 169321994 C T DDX60L Silent p.R1158R 0.58 TCGA-EB-A44O-01 4 175898316 175898316 C T ADAM29 Missense_Mutation p.S547L 0.38 tolerated(0.15) benign(0.081) TCGA-EB-A44O-01 4 178882004 178882004 A C LINC01098 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.019) TCGA-EB-A44O-01 4 184930731 184930731 C T STOX2 Missense_Mutation p.S247F 0.28 tolerated(0.15) probably_damaging(0.929) TCGA-EB-A44O-01 4 185012432 185012432 C T ENPP6 Nonsense_Mutation p.W407* 0.31 TCGA-EB-A44O-01 4 38016144 38016144 C T TBC1D1 Silent p.I144I 0.46 TCGA-EB-A44O-01 4 38776440 38776440 C T TLR10 Missense_Mutation p.D258N 0.44 tolerated(0.46) benign(0.15) TCGA-EB-A44O-01 4 40045296 40045296 C T RP11-333E13.4 RNA 0.30 TCGA-EB-A44O-01 4 41015864 41015864 G A APBB2 Nonsense_Mutation p.Q191* 0.37 TCGA-EB-A44O-01 4 65275027 65275027 C T TECRL Missense_Mutation p.A15T 0.61 deleterious_low_confidence(0.03) benign(0.001) TCGA-EB-A44O-01 4 69344587 69344587 C T TMPRSS11E Nonsense_Mutation p.R330* 0.76 TCGA-EB-A44O-01 4 69962444 69962444 C T UGT2B7 Missense_Mutation p.S69L 0.34 tolerated(0.09) benign(0.008) TCGA-EB-A44O-01 4 70351077 70351077 C T UGT2B4 Missense_Mutation p.G387R 0.43 deleterious(0.02) probably_damaging(1) TCGA-EB-A44O-01 4 74347548 74347548 C T AFM Missense_Mutation p.S19F 0.40 deleterious(0.05) unknown(0) TCGA-EB-A44O-01 4 79362440 79362440 A G FRAS1 Missense_Mutation p.N1885S 0.50 probably_damaging(0.936) TCGA-EB-A44O-01 4 79393421 79393421 C T FRAS1 Missense_Mutation p.P2487S 0.39 probably_damaging(0.959) TCGA-EB-A44O-01 4 79428724 79428724 G A FRAS1 Missense_Mutation p.E3156K 0.34 benign(0.191) TCGA-EB-A44O-01 4 83838899 83838899 C T THAP9 Missense_Mutation p.R512C 0.39 deleterious(0) probably_damaging(0.98) TCGA-EB-A44O-01 4 85594031 85594031 C T WDFY3 Missense_Mutation p.R3524Q 0.40 tolerated_low_confidence(0.11) benign(0.023) TCGA-EB-A44O-01 5 101597712 101597712 G A SLCO4C1 Nonsense_Mutation p.R309* 0.68 TCGA-EB-A44O-01 5 118970272 118970272 C T FAM170A Nonsense_Mutation p.Q277* 0.68 TCGA-EB-A44O-01 5 138714356 138714356 C T SLC23A1 Missense_Mutation p.G368D 0.75 deleterious(0) probably_damaging(0.991) TCGA-EB-A44O-01 5 140187261 140187261 G A PCDHA4 Silent p.G163G 0.66 TCGA-EB-A44O-01 5 140221050 140221050 C T PCDHA8 Silent p.I48I 0.75 TCGA-EB-A44O-01 5 140348079 140348079 C A PCDHAC2 Silent p.A576A 0.49 TCGA-EB-A44O-01 5 140348080 140348080 C T PCDHAC2 Missense_Mutation p.P577S 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 5 151784108 151784108 G A NMUR2 Silent p.F189F 0.55 TCGA-EB-A44O-01 5 154396858 154396858 C T KIF4B Missense_Mutation p.P1147S 0.59 deleterious(0.05) probably_damaging(0.918) TCGA-EB-A44O-01 5 167895974 167895974 C T WWC1 Silent p.F1104F 0.70 TCGA-EB-A44O-01 5 176318163 176318163 C A HK3 Missense_Mutation p.G97W 0.52 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 5 176318164 176318164 C T HK3 Silent p.L96L 0.52 TCGA-EB-A44O-01 5 176941974 176941974 C T DDX41 Silent p.E247E 0.68 TCGA-EB-A44O-01 5 180335889 180335889 C T BTNL8 Missense_Mutation p.S118F 0.71 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A44O-01 5 19483659 19483659 T C CDH18 Missense_Mutation p.N545D 0.93 deleterious(0) benign(0.415) TCGA-EB-A44O-01 5 24535366 24535366 C T CDH10 Silent p.P223P 0.65 TCGA-EB-A44O-01 5 37815977 37815977 C T GDNF Missense_Mutation p.E155K 0.64 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 5 41176619 41176619 C T C6 Missense_Mutation p.D376N 0.68 deleterious(0) probably_damaging(0.997) TCGA-EB-A44O-01 5 5237176 5237176 G A ADAMTS16 Silent p.E706E 0.65 TCGA-EB-A44O-01 5 53751954 53751954 G A HSPB3 Missense_Mutation p.R112K 0.62 deleterious(0) probably_damaging(0.994) TCGA-EB-A44O-01 5 68568843 68568843 C T CDK7 Missense_Mutation p.P280L 0.71 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 5 75886364 75886364 G A IQGAP2 Missense_Mutation p.E258K 0.61 tolerated(0.86) benign(0.04) TCGA-EB-A44O-01 6 100403900 100403900 C T MCHR2 Missense_Mutation p.G42R 0.71 deleterious(0) possibly_damaging(0.739) TCGA-EB-A44O-01 6 10903145 10903145 C T SYCP2L Missense_Mutation p.P197L 0.30 deleterious(0) probably_damaging(0.988) TCGA-EB-A44O-01 6 110763731 110763731 C T SLC22A16 Missense_Mutation p.R300Q 0.75 deleterious(0) probably_damaging(0.961) TCGA-EB-A44O-01 6 111696526 111696526 A G REV3L Missense_Mutation p.M1011T 0.64 deleterious(0) benign(0.083) TCGA-EB-A44O-01 6 119510976 119510976 G A MAN1A1 Silent p.L467L 0.67 TCGA-EB-A44O-01 6 122768396 122768396 G A SERINC1 Missense_Mutation p.P289S 0.60 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A44O-01 6 126176341 126176341 T G NCOA7 Missense_Mutation p.L76V 0.69 deleterious(0.04) possibly_damaging(0.607) TCGA-EB-A44O-01 6 143094815 143094815 G A HIVEP2 Missense_Mutation p.S354F 0.62 deleterious(0.02) possibly_damaging(0.602) TCGA-EB-A44O-01 6 158294191 158294191 C T SNX9 Missense_Mutation p.P53S 0.65 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 6 17772199 17772199 A G KIF13A Silent p.P1472P 0.34 TCGA-EB-A44O-01 6 24437486 24437486 C T GPLD1 Silent p.V684V 0.39 TCGA-EB-A44O-01 6 25726524 25726524 G A HIST1H2AA Missense_Mutation p.R78C 0.33 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-EB-A44O-01 6 26056369 26056369 C T HIST1H1C Silent p.T96T 0.34 TCGA-EB-A44O-01 6 26184302 26184302 G A HIST1H2BE Silent p.R93R 0.32 TCGA-EB-A44O-01 6 26197395 26197395 C T HIST1H3D Silent p.K28K 0.52 TCGA-EB-A44O-01 6 27115285 27115285 G A HIST1H2AH Silent p.K126K 0.50 TCGA-EB-A44O-01 6 27222512 27222512 C T PRSS16 Silent p.L397L 0.37 TCGA-EB-A44O-01 6 28327306 28327306 C T ZKSCAN3 5'UTR 0.41 TCGA-EB-A44O-01 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.29 deleterious(0.02) benign(0.022) TCGA-EB-A44O-01 6 292526 292526 C T DUSP22 5'UTR 0.32 TCGA-EB-A44O-01 6 29637989 29637989 A T MOG Intron 0.43 TCGA-EB-A44O-01 6 31748868 31748868 G A VARS Silent p.H859H 0.44 TCGA-EB-A44O-01 6 32008951 32008951 C T CYP21A2 3'UTR 0.62 TCGA-EB-A44O-01 6 32011333 32011333 A G TNXB Missense_Mutation p.V273A 0.32 tolerated(1) benign(0.016) TCGA-EB-A44O-01 6 32046827 32046827 G A RNA5SP206 5'Flank 0.26 TCGA-EB-A44O-01 6 35255538 35255538 G A ZNF76 Silent p.E116E 0.36 TCGA-EB-A44O-01 6 36653666 36653666 T C CDKN1A 3'UTR 0.33 TCGA-EB-A44O-01 6 4099326 4099326 C T C6orf201 Missense_Mutation p.P60S 0.33 tolerated(0.05) possibly_damaging(0.882) TCGA-EB-A44O-01 6 42146071 42146071 G A GUCA1A Silent p.K85K 0.41 TCGA-EB-A44O-01 6 47563740 47563740 C T CD2AP Missense_Mutation p.P418S 0.38 tolerated(0.73) possibly_damaging(0.761) TCGA-EB-A44O-01 6 49753784 49753784 C T PGK2 Missense_Mutation p.G373S 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 6 51941127 51941127 G A PKHD1 Missense_Mutation p.S132F 0.24 deleterious(0) probably_damaging(0.994) TCGA-EB-A44O-01 6 55113565 55113565 G A HCRTR2 Missense_Mutation p.E118K 0.41 deleterious(0) probably_damaging(0.934) TCGA-EB-A44O-01 6 56469097 56469097 C T DST Intron 0.62 TCGA-EB-A44O-01 6 73952133 73952133 G A KHDC1 Silent p.I109I 0.53 TCGA-EB-A44O-01 6 85446516 85446516 G A TBX18 Missense_Mutation p.P571S 0.83 tolerated_low_confidence(0.68) probably_damaging(0.994) TCGA-EB-A44O-01 6 87969757 87969757 C T ZNF292 Missense_Mutation p.A2137V 0.91 deleterious(0) probably_damaging(0.994) TCGA-EB-A44O-01 7 100348394 100348394 G A ZAN Missense_Mutation p.E466K 0.41 benign(0.064) TCGA-EB-A44O-01 7 100681084 100681084 C T MUC17 Silent p.S2129S 0.36 TCGA-EB-A44O-01 7 100694941 100694941 G A MUC17 Missense_Mutation p.V4308M 0.52 unknown(0) TCGA-EB-A44O-01 7 107340565 107340565 C T SLC26A4 Missense_Mutation p.S551F 0.37 tolerated(0.05) possibly_damaging(0.591) TCGA-EB-A44O-01 7 115590950 115590950 G A TFEC Missense_Mutation p.L165F 0.39 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 7 117874919 117874919 G A ANKRD7 Silent p.A153A 0.41 TCGA-EB-A44O-01 7 127235498 127235498 C T FSCN3 Silent p.C94C 0.47 TCGA-EB-A44O-01 7 128445940 128445940 C T CCDC136 Silent p.S358S 0.42 TCGA-EB-A44O-01 7 128445941 128445941 C T CCDC136 Missense_Mutation p.H359Y 0.43 deleterious(0.05) benign(0.017) TCGA-EB-A44O-01 7 130145062 130145062 G A MEST 3'UTR 0.61 TCGA-EB-A44O-01 7 131848993 131848993 C T PLXNA4 Missense_Mutation p.E1470K 0.43 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 7 137206693 137206693 G A DGKI Missense_Mutation p.R723C 0.40 deleterious(0) probably_damaging(0.998) TCGA-EB-A44O-01 7 138447094 138447094 C T ATP6V0A4 Missense_Mutation p.G168E 0.40 tolerated(0.33) probably_damaging(0.911) TCGA-EB-A44O-01 7 141731546 141731546 G A MGAM Missense_Mutation p.E513K 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A44O-01 7 143141217 143141217 G A TAS2R60 Silent p.R224R 0.33 TCGA-EB-A44O-01 7 149152272 149152272 G A ZNF777 Missense_Mutation p.P281L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 7 150094412 150094412 C T ZNF775 Silent p.F281F 0.38 TCGA-EB-A44O-01 7 21747413 21747413 G A DNAH11 Missense_Mutation p.G2222S 0.30 probably_damaging(0.998) TCGA-EB-A44O-01 7 27187309 27187309 G A HOXA6 Silent p.S20S 0.33 TCGA-EB-A44O-01 7 30491516 30491516 G A NOD1 Missense_Mutation p.P506L 0.25 tolerated(0.37) benign(0.005) TCGA-EB-A44O-01 7 33313484 33313484 T C BBS9 Missense_Mutation p.M311T 0.30 tolerated(0.29) benign(0.004) TCGA-EB-A44O-01 7 34697904 34697904 G A NPSR1 5'UTR 0.40 TCGA-EB-A44O-01 7 38402650 38402650 G A TRGV2 Nonsense_Mutation p.Q57* 0.42 TCGA-EB-A44O-01 7 38402961 38402961 G A TRGV2 5'UTR 0.33 TCGA-EB-A44O-01 7 43680234 43680234 G A COA1 Silent p.V93V 0.36 TCGA-EB-A44O-01 7 44178465 44178465 C T MYL7 3'UTR 0.42 TCGA-EB-A44O-01 7 44737297 44737297 C T OGDH Silent p.I758I 0.42 TCGA-EB-A44O-01 7 50467960 50467960 G A IKZF1 Missense_Mutation p.D357N 0.46 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A44O-01 7 56007278 56007278 A G ZNF713 Missense_Mutation p.H291R 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A44O-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.26 deleterious(0) possibly_damaging(0.869) TCGA-EB-A44O-01 7 75877519 75877519 G A SRRM3 Missense_Mutation p.E83K 0.20 deleterious(0) unknown(0) TCGA-EB-A44O-01 7 76916807 76916807 C T CCDC146 Silent p.F776F 0.50 TCGA-EB-A44O-01 7 86493647 86493647 C T GRM3 Silent p.L872L 0.34 TCGA-EB-A44O-01 7 8790682 8790682 G A NXPH1 Silent p.L33L 0.30 TCGA-EB-A44O-01 7 88424205 88424205 C T C7orf62 Missense_Mutation p.E18K 0.26 deleterious_low_confidence(0.02) benign(0.12) TCGA-EB-A44O-01 7 92760569 92760569 G A SAMD9L Silent p.S1572S 0.39 TCGA-EB-A44O-01 7 92763976 92763976 C T SAMD9L Missense_Mutation p.E437K 0.32 deleterious(0) probably_damaging(0.994) TCGA-EB-A44O-01 7 92826826 92826826 G A HEPACAM2 Silent p.F370F 0.22 TCGA-EB-A44O-01 7 94540585 94540585 C T PPP1R9A Missense_Mutation p.S387L 0.43 tolerated(0.32) benign(0.002) TCGA-EB-A44O-01 7 99773899 99773899 G A GPC2 Nonsense_Mutation p.R86* 0.27 TCGA-EB-A44O-01 7 99773900 99773900 G A GPC2 Silent p.F85F 0.33 TCGA-EB-A44O-01 8 101152946 101152946 C T FBXO43 Missense_Mutation p.M512I 0.46 tolerated(0.73) benign(0.002) TCGA-EB-A44O-01 8 10465622 10465622 C T RP1L1 Missense_Mutation p.E1996K 0.39 unknown(0) TCGA-EB-A44O-01 8 113933969 113933969 G A CSMD3 Missense_Mutation p.T507I 0.24 tolerated(0.1) benign(0.062) TCGA-EB-A44O-01 8 11405611 11405611 G A BLK Silent p.G82G 0.26 TCGA-EB-A44O-01 8 11994738 11994738 C T USP17L2 Missense_Mutation p.R511K 0.32 tolerated(0.11) benign(0.055) TCGA-EB-A44O-01 8 11994959 11994959 C T USP17L2 Nonsense_Mutation p.W437* 0.24 TCGA-EB-A44O-01 8 121170430 121170430 G A COL14A1 Nonsense_Mutation p.W50* 0.28 TCGA-EB-A44O-01 8 124664776 124664776 A G KLHL38 Silent p.L131L 0.26 TCGA-EB-A44O-01 8 130789652 130789652 G A GSDMC Missense_Mutation p.S61F 0.40 deleterious(0) probably_damaging(0.995) TCGA-EB-A44O-01 8 136554976 136554976 C T KHDRBS3 Missense_Mutation p.S96F 0.24 deleterious(0) probably_damaging(0.981) TCGA-EB-A44O-01 8 139164899 139164899 A T FAM135B Missense_Mutation p.S607T 0.44 tolerated(0.3) benign(0.004) TCGA-EB-A44O-01 8 139164901 139164901 G A FAM135B Missense_Mutation p.S606F 0.44 deleterious(0.03) benign(0.033) TCGA-EB-A44O-01 8 144406777 144406777 G A TOP1MT Missense_Mutation p.P232S 0.35 deleterious(0.04) probably_damaging(0.94) TCGA-EB-A44O-01 8 15519684 15519684 C T TUSC3 Missense_Mutation p.P196L 0.41 deleterious(0.01) possibly_damaging(0.714) TCGA-EB-A44O-01 8 22458639 22458639 C T C8orf58 Silent p.S95S 0.50 TCGA-EB-A44O-01 8 23159540 23159540 C T LOXL2 Silent p.Q711Q 0.33 TCGA-EB-A44O-01 8 23538747 23538747 G A NKX3-1 Missense_Mutation p.P231L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 8 24253233 24253233 G A ADAMDEC1 Missense_Mutation p.E122K 0.38 tolerated(0.27) benign(0.095) TCGA-EB-A44O-01 8 24324318 24324318 C T ADAM7 Silent p.F132F 0.41 TCGA-EB-A44O-01 8 24324469 24324469 G A ADAM7 Missense_Mutation p.D183N 0.34 tolerated(0.27) benign(0.012) TCGA-EB-A44O-01 8 25718687 25718687 C T EBF2 Missense_Mutation p.R407K 0.47 deleterious(0.04) possibly_damaging(0.815) TCGA-EB-A44O-01 8 28384774 28384774 C A FZD3 Missense_Mutation p.P166H 0.35 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 8 28574866 28574866 C T EXTL3 Silent p.F430F 0.48 TCGA-EB-A44O-01 8 29927323 29927323 T A TMEM66 Missense_Mutation p.I179F 0.41 deleterious(0) possibly_damaging(0.857) TCGA-EB-A44O-01 8 36776397 36776397 C T KCNU1 Missense_Mutation p.P860S 0.51 deleterious(0.01) benign(0.382) TCGA-EB-A44O-01 8 40389657 40389657 G A ZMAT4 3'UTR 0.42 TCGA-EB-A44O-01 8 67428287 67428287 C T C8orf46 Silent p.T200T 0.31 TCGA-EB-A44O-01 8 67976655 67976655 G A CSPP1 Missense_Mutation p.A8T 0.41 tolerated_low_confidence(0.17) benign(0.139) TCGA-EB-A44O-01 8 77763237 77763237 G A ZFHX4 Nonsense_Mutation p.W1360* 0.33 TCGA-EB-A44O-01 8 81555290 81555290 G A ZNF704 Silent p.P369P 0.18 TCGA-EB-A44O-01 8 87679236 87679236 C T CNGB3 Missense_Mutation p.D257N 0.28 deleterious(0) probably_damaging(0.994) TCGA-EB-A44O-01 8 88365972 88365972 A T CNBD1 Nonsense_Mutation p.K421* 0.61 TCGA-EB-A44O-01 8 94934315 94934315 C T PDP1 Missense_Mutation p.P35S 0.27 deleterious_low_confidence(0.04) benign(0.173) TCGA-EB-A44O-01 9 100888951 100888951 G A CORO2A Silent p.S442S 0.35 TCGA-EB-A44O-01 9 101168388 101168388 C T GABBR2 Silent p.G424G 0.47 TCGA-EB-A44O-01 9 101594193 101594193 C T GALNT12 Missense_Mutation p.P291S 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 9 107267114 107267114 G A OR13F1 Missense_Mutation p.D191N 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-EB-A44O-01 9 108366510 108366510 G A FKTN Silent p.R128R 0.31 TCGA-EB-A44O-01 9 112705405 112705405 G A PALM2 Missense_Mutation p.M312I 0.29 deleterious(0) possibly_damaging(0.779) TCGA-EB-A44O-01 9 113212403 113212403 C T SVEP1 Missense_Mutation p.D1347N 0.34 benign(0.107) TCGA-EB-A44O-01 9 114695129 114695129 A G UGCG Missense_Mutation p.K346R 0.33 tolerated(0.09) benign(0.274) TCGA-EB-A44O-01 9 116812406 116812406 G A ZNF618 Missense_Mutation p.D849N 0.30 tolerated(0.41) possibly_damaging(0.709) TCGA-EB-A44O-01 9 117139164 117139164 G A AKNA Missense_Mutation p.P308L 0.24 deleterious(0) probably_damaging(0.971) TCGA-EB-A44O-01 9 120475859 120475859 G A TLR4 Missense_Mutation p.E485K 0.39 tolerated(0.05) benign(0.001) TCGA-EB-A44O-01 9 123527023 123527023 C T FBXW2 Silent p.R393R 0.33 TCGA-EB-A44O-01 9 124751486 124751486 G A TTLL11 Silent p.P509P 0.30 TCGA-EB-A44O-01 9 125288700 125288700 C T OR1N1 Silent p.R291R 0.39 TCGA-EB-A44O-01 9 125673691 125673691 G A ZBTB6 Missense_Mutation p.H221Y 0.44 deleterious(0.01) benign(0.024) TCGA-EB-A44O-01 9 125772784 125772784 C T RABGAP1 Missense_Mutation p.P509L 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-EB-A44O-01 9 130485459 130485459 C T TTC16 Missense_Mutation p.A240V 0.43 deleterious(0) probably_damaging(0.986) TCGA-EB-A44O-01 9 131375668 131375668 C T SPTAN1 Silent p.A1684A 0.48 TCGA-EB-A44O-01 9 131455201 131455201 C T SET Silent p.L158L 0.39 TCGA-EB-A44O-01 9 133370305 133370305 C T ASS1 Missense_Mutation p.S341F 0.34 deleterious(0) probably_damaging(0.997) TCGA-EB-A44O-01 9 135042377 135042377 G A NTNG2 Silent p.K53K 0.34 TCGA-EB-A44O-01 9 136263182 136263182 G A C9orf96 Missense_Mutation p.G361S 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-EB-A44O-01 9 138395565 138395565 C T MRPS2 Silent p.A159A 0.34 TCGA-EB-A44O-01 9 138606540 138606540 C T KCNT1 Silent p.G76G 0.33 TCGA-EB-A44O-01 9 139652367 139652367 G A LCN8 Missense_Mutation p.R6W 0.48 tolerated(0.19) benign(0.001) TCGA-EB-A44O-01 9 139652368 139652368 G A LCN8 Silent p.D5D 0.48 TCGA-EB-A44O-01 9 139756684 139756684 G A EDF1 3'UTR 0.40 TCGA-EB-A44O-01 9 139802543 139802543 C T TRAF2 Missense_Mutation p.P130S 0.30 tolerated(0.14) benign(0.006) TCGA-EB-A44O-01 9 139911698 139911698 G A ABCA2 Nonsense_Mutation p.R835* 0.46 TCGA-EB-A44O-01 9 139911699 139911699 G A ABCA2 Silent p.I834I 0.47 TCGA-EB-A44O-01 9 140082264 140082264 G A ANAPC2 Missense_Mutation p.R137C 0.26 deleterious(0.04) benign(0.28) TCGA-EB-A44O-01 9 141016158 141016158 C T CACNA1B Missense_Mutation p.P2243S 0.32 tolerated(0.52) benign(0.018) TCGA-EB-A44O-01 9 141070903 141070903 G A TUBBP5 RNA 0.30 TCGA-EB-A44O-01 9 14720310 14720310 A C CER1 Missense_Mutation p.H194Q 0.65 tolerated(0.06) benign(0.107) TCGA-EB-A44O-01 9 17787503 17787503 G A SH3GL2 Missense_Mutation p.E153K 0.73 deleterious(0) possibly_damaging(0.633) TCGA-EB-A44O-01 9 21350502 21350502 C T IFNA6 Missense_Mutation p.V129M 0.68 tolerated(0.13) benign(0.149) TCGA-EB-A44O-01 9 21971092 21971096 CCCTC - CDKN2A Frame_Shift_Del p.E88Lfs*30 0.53 TCGA-EB-A44O-01 9 35689733 35689733 C T TPM2 Missense_Mutation p.D28N 0.66 deleterious(0.05) benign(0.026) TCGA-EB-A44O-01 9 35793992 35793992 G A NPR2 Silent p.L255L 0.52 TCGA-EB-A44O-01 9 37744542 37744542 G T FRMPD1 Missense_Mutation p.R838I 0.79 deleterious(0) probably_damaging(0.999) TCGA-EB-A44O-01 9 77377994 77377994 T C TRPM6 Missense_Mutation p.K1198R 0.46 deleterious(0.02) benign(0.162) TCGA-EB-A44O-01 9 8492909 8492909 C T PTPRD Missense_Mutation p.G807E 0.63 deleterious(0.02) probably_damaging(0.99) TCGA-EB-A44O-01 9 90503026 90503026 G A SPATA31E1 Silent p.R1208R 0.38 TCGA-EB-A44O-01 X 10188710 10188710 G A CLCN4 Missense_Mutation p.R662K 0.80 tolerated(0.28) benign(0.005) TCGA-EB-A44O-01 X 101912264 101912264 C T GPRASP1 Silent p.S1141S 0.80 TCGA-EB-A44O-01 X 103495026 103495026 G A ESX1 Silent p.P368P 0.68 TCGA-EB-A44O-01 X 11187687 11187687 C T ARHGAP6 Missense_Mutation p.E583K 0.70 deleterious(0) possibly_damaging(0.844) TCGA-EB-A44O-01 X 130416992 130416992 C T IGSF1 Missense_Mutation p.G305D 0.73 tolerated(0.11) probably_damaging(0.976) TCGA-EB-A44O-01 X 134185763 134185763 G A FAM127B 3'UTR 0.86 TCGA-EB-A44O-01 X 152991508 152991508 C T ABCD1 Missense_Mutation p.P263S 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 X 152991509 152991509 C T ABCD1 Missense_Mutation p.P263L 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A44O-01 X 20062514 20062514 T C MAP7D2 Missense_Mutation p.K283E 0.84 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A44O-01 X 50051941 50051941 G A CCNB3 Missense_Mutation p.E258K 0.72 tolerated(0.5) benign(0.105) TCGA-EB-A44O-01 X 73961589 73961589 G A KIAA2022 Missense_Mutation p.P935S 0.81 tolerated(0.38) benign(0.009) TCGA-EB-A44P-01 10 102987032 102987032 C T LBX1 Missense_Mutation p.D281N 0.61 deleterious_low_confidence(0) unknown(0) TCGA-EB-A44P-01 10 103988837 103988837 C T ELOVL3 Missense_Mutation p.A214V 0.86 tolerated(0.52) benign(0.048) TCGA-EB-A44P-01 10 104175826 104175826 G A PSD Silent p.I235I 0.67 TCGA-EB-A44P-01 10 114185150 114185150 G A ACSL5 Missense_Mutation p.G606R 0.62 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 10 114202024 114202024 G A ZDHHC6 Missense_Mutation p.L149F 0.89 tolerated(0.4) benign(0.044) TCGA-EB-A44P-01 10 129902716 129902716 G A MKI67 Missense_Mutation p.S2463F 0.65 deleterious(0) possibly_damaging(0.661) TCGA-EB-A44P-01 10 22898620 22898620 G A PIP4K2A Silent p.I57I 0.68 TCGA-EB-A44P-01 10 72307181 72307181 C T PALD1 Silent p.I747I 0.67 TCGA-EB-A44P-01 10 89690801 89690801 A G PTEN Splice_Site p.X70_splice 0.74 TCGA-EB-A44P-01 10 95994022 95994022 C T PLCE1 Missense_Mutation p.L723F 0.50 tolerated(0.11) benign(0.032) TCGA-EB-A44P-01 11 113076866 113076866 G A NCAM1 Missense_Mutation p.E257K 0.36 deleterious(0) probably_damaging(0.996) TCGA-EB-A44P-01 11 114278242 114278242 C T RBM7 Missense_Mutation p.P172S 0.34 tolerated(0.09) benign(0.139) TCGA-EB-A44P-01 11 117094835 117094835 T A PCSK7 Missense_Mutation p.N338I 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 11 121037467 121037467 G A TECTA Missense_Mutation p.G1855E 0.29 deleterious(0.05) probably_damaging(0.989) TCGA-EB-A44P-01 11 124794732 124794732 G C HEPACAM Missense_Mutation p.L107V 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A44P-01 11 1502019 1502019 G A MOB2 Silent p.F69F 0.50 TCGA-EB-A44P-01 11 22696349 22696349 G A GAS2 Intron 0.36 TCGA-EB-A44P-01 11 22696351 22696351 G A GAS2 Intron 0.36 TCGA-EB-A44P-01 11 33123833 33123833 G A CSTF3 Missense_Mutation p.P239L 0.39 deleterious(0.01) possibly_damaging(0.696) TCGA-EB-A44P-01 11 372665 372665 G A B4GALNT4 Missense_Mutation p.E87K 0.36 deleterious(0.03) possibly_damaging(0.57) TCGA-EB-A44P-01 11 47200523 47200523 G A PACSIN3 Missense_Mutation p.P320L 0.37 tolerated(0.19) benign(0.033) TCGA-EB-A44P-01 11 4790977 4790977 G A OR51F1 Silent p.L57L 0.28 TCGA-EB-A44P-01 11 4928960 4928960 G A OR51A7 Missense_Mutation p.D121N 0.39 deleterious(0) probably_damaging(0.995) TCGA-EB-A44P-01 11 4945486 4945486 C T OR51G1 Nonsense_Mutation p.W28* 0.34 TCGA-EB-A44P-01 11 50003858 50003858 G A OR4C12 Silent p.F60F 0.38 TCGA-EB-A44P-01 11 55038319 55038319 C T TRIM48 3'UTR 0.41 TCGA-EB-A44P-01 11 55541690 55541690 C T OR5D13 Silent p.F259F 0.37 TCGA-EB-A44P-01 11 55872644 55872644 G A OR8H2 Silent p.G42G 0.34 TCGA-EB-A44P-01 11 55905072 55905072 C T OR8J3 Silent p.G41G 0.46 TCGA-EB-A44P-01 11 56380221 56380221 C T OR5M1 Missense_Mutation p.G253E 0.36 deleterious(0) possibly_damaging(0.489) TCGA-EB-A44P-01 11 60230563 60230563 C A MS4A1 Missense_Mutation p.T83N 0.28 tolerated(0.18) possibly_damaging(0.719) TCGA-EB-A44P-01 11 65638014 65638014 C T EFEMP2 Silent p.E161E 0.38 TCGA-EB-A44P-01 11 68837917 68837917 C T TPCN2 Silent p.S283S 0.33 TCGA-EB-A44P-01 11 70332969 70332969 G A SHANK2 Silent p.S1144S 0.33 TCGA-EB-A44P-01 11 71715345 71715345 G A NUMA1 Nonsense_Mutation p.R2017* 0.32 TCGA-EB-A44P-01 11 73997285 73997285 G A P4HA3 Silent p.T307T 0.44 TCGA-EB-A44P-01 11 76372238 76372238 C T LRRC32 Silent p.G133G 0.38 TCGA-EB-A44P-01 11 78387423 78387423 C T TENM4 Missense_Mutation p.R1757Q 0.37 tolerated(0.31) possibly_damaging(0.493) TCGA-EB-A44P-01 11 82645000 82645000 C T C11orf82 Missense_Mutation p.P874S 0.38 tolerated(0.4) benign(0.201) TCGA-EB-A44P-01 11 9052323 9052323 G A SCUBE2 Nonsense_Mutation p.Q718* 0.44 TCGA-EB-A44P-01 11 92086673 92086673 A G FAT3 Silent p.A465A 0.35 TCGA-EB-A44P-01 11 9215197 9215197 C A DENND5A Silent p.T327T 0.32 TCGA-EB-A44P-01 11 93822029 93822029 G A HEPHL1 Missense_Mutation p.G730E 0.42 tolerated(1) benign(0.342) TCGA-EB-A44P-01 12 111801085 111801085 G A FAM109A Silent p.F62F 0.33 TCGA-EB-A44P-01 12 114397165 114397165 C T RBM19 Silent p.Q141Q 0.29 TCGA-EB-A44P-01 12 117655918 117655918 C T NOS1 Missense_Mutation p.E1442K 0.40 deleterious(0) probably_damaging(0.998) TCGA-EB-A44P-01 12 123352008 123352008 C T VPS37B Silent p.Q171Q 0.47 TCGA-EB-A44P-01 12 124915283 124915283 C T NCOR2 Silent p.K311K 0.38 TCGA-EB-A44P-01 12 21995340 21995340 C T ABCC9 Missense_Mutation p.M1127I 0.29 tolerated(0.1) benign(0.001) TCGA-EB-A44P-01 12 29624844 29624844 G A OVCH1 Missense_Mutation p.P583S 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 12 43925874 43925874 G A ADAMTS20 Missense_Mutation p.S193F 0.39 tolerated(0.08) benign(0.037) TCGA-EB-A44P-01 12 4848348 4848348 C T GALNT8 Missense_Mutation p.P177S 0.41 tolerated(0.22) benign(0.043) TCGA-EB-A44P-01 12 54905837 54905837 G A NCKAP1L Missense_Mutation p.D297N 0.34 deleterious(0) benign(0.375) TCGA-EB-A44P-01 12 56031545 56031545 C T OR10P1 Silent p.I290I 0.34 TCGA-EB-A44P-01 13 19752485 19752485 C T TUBA3C Silent p.L92L 0.40 TCGA-EB-A44P-01 13 24895217 24895217 C T C1QTNF9 Missense_Mutation p.L105F 0.48 tolerated(0.76) benign(0.003) TCGA-EB-A44P-01 13 27829489 27829489 T C RPL21 Silent p.V80V 0.47 TCGA-EB-A44P-01 13 39586889 39586889 G A PROSER1 Missense_Mutation p.L834F 0.44 deleterious(0) probably_damaging(0.998) TCGA-EB-A44P-01 13 40175213 40175213 G A LHFP Silent p.F47F 0.41 TCGA-EB-A44P-01 13 49830000 49830000 C T CDADC1 Missense_Mutation p.P68L 0.38 tolerated_low_confidence(0.82) benign(0.008) TCGA-EB-A44P-01 13 49830001 49830001 C T CDADC1 Silent p.P68P 0.37 TCGA-EB-A44P-01 13 51952464 51952464 G A INTS6 Missense_Mutation p.L505F 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A44P-01 14 105222013 105222013 C T SIVA1 Silent p.D55D 0.30 TCGA-EB-A44P-01 14 105349666 105349666 C T CEP170B Missense_Mutation p.S291F 0.31 deleterious(0) probably_damaging(0.97) TCGA-EB-A44P-01 14 20296445 20296445 C T OR4N2 Missense_Mutation p.P280S 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A44P-01 14 20928415 20928415 G A TMEM55B Missense_Mutation p.P133S 0.26 deleterious(0.01) probably_damaging(0.935) TCGA-EB-A44P-01 14 23844835 23844835 T C IL25 Silent p.L94L 0.32 TCGA-EB-A44P-01 14 24798697 24798697 C T ADCY4 Silent p.G420G 0.35 TCGA-EB-A44P-01 14 24798698 24798698 C T ADCY4 Missense_Mutation p.G420E 0.34 tolerated(0.1) possibly_damaging(0.821) TCGA-EB-A44P-01 14 50625331 50625331 T G SOS2 Missense_Mutation p.Y629S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 14 51383426 51383426 G A PYGL Silent p.H342H 0.26 TCGA-EB-A44P-01 14 51383723 51383723 G A PYGL Missense_Mutation p.S319F 0.27 tolerated(0.35) benign(0.31) TCGA-EB-A44P-01 14 55819043 55819043 C T FBXO34 Silent p.S645S 0.36 TCGA-EB-A44P-01 14 70712532 70712532 C T ADAM21P1 RNA 0.38 TCGA-EB-A44P-01 14 74514754 74514754 C T CCDC176 Missense_Mutation p.H257Y 0.50 deleterious(0.02) benign(0.382) TCGA-EB-A44P-01 14 76957962 76957962 C T ESRRB Silent p.L320L 0.23 TCGA-EB-A44P-01 14 77880280 77880280 G A NOXRED1 Silent p.L116L 0.25 TCGA-EB-A44P-01 14 93673509 93673509 C T UBR7 5'UTR 0.33 TCGA-EB-A44P-01 15 25419986 25419986 C T SNORD115-3 5'Flank 0.31 TCGA-EB-A44P-01 15 25468246 25468246 C T SNORD115-27 3'Flank 0.53 TCGA-EB-A44P-01 15 34651893 34651893 G T LPCAT4 Silent p.G432G 0.33 TCGA-EB-A44P-01 15 34651894 34651894 C T LPCAT4 Missense_Mutation p.G432D 0.33 tolerated(0.46) possibly_damaging(0.669) TCGA-EB-A44P-01 15 40751526 40751526 C T BAHD1 Missense_Mutation p.P288L 0.43 tolerated(1) benign(0.001) TCGA-EB-A44P-01 15 42452873 42452873 G A VPS39 3'UTR 0.45 TCGA-EB-A44P-01 15 45556932 45556932 A G SLC28A2 Missense_Mutation p.Y223C 0.22 deleterious(0) possibly_damaging(0.643) TCGA-EB-A44P-01 15 50294350 50294350 C T ATP8B4 Missense_Mutation p.G169E 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 15 50294351 50294351 C T ATP8B4 Missense_Mutation p.G169R 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 15 66615186 66615186 T C DIS3L Silent p.N496N 0.31 TCGA-EB-A44P-01 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.41 deleterious(0) probably_damaging(0.976) TCGA-EB-A44P-01 15 89843040 89843040 A G FANCI Silent p.L882L 0.39 TCGA-EB-A44P-01 15 99500673 99500673 C T IGF1R 3'UTR 0.35 TCGA-EB-A44P-01 16 1259380 1259380 G A CACNA1H Missense_Mutation p.D1238N 0.25 tolerated(0.1) benign(0.008) TCGA-EB-A44P-01 16 20673143 20673143 C T ACSM1 Missense_Mutation p.R322Q 0.34 deleterious(0.04) benign(0.426) TCGA-EB-A44P-01 16 20787246 20787246 C T ACSM3 Missense_Mutation p.S102F 0.36 tolerated(0.32) benign(0.006) TCGA-EB-A44P-01 16 2511174 2511174 C T C16orf59 Missense_Mutation p.A185V 0.40 tolerated(0.38) benign(0.011) TCGA-EB-A44P-01 16 2511175 2511175 C T C16orf59 Silent p.A185A 0.40 TCGA-EB-A44P-01 16 30978284 30978284 C T SETD1A Missense_Mutation p.S862F 0.36 possibly_damaging(0.831) TCGA-EB-A44P-01 16 31368378 31368378 C T ITGAX Silent p.L92L 0.32 TCGA-EB-A44P-01 16 31539946 31539946 C T AHSP Silent p.F81F 0.26 TCGA-EB-A44P-01 16 3487175 3487175 T C ZNF597 Missense_Mutation p.Q175R 0.39 tolerated(0.21) probably_damaging(0.91) TCGA-EB-A44P-01 16 4924931 4924931 C T UBN1 Silent p.S840S 0.45 TCGA-EB-A44P-01 16 50332867 50332867 C T ADCY7 Missense_Mutation p.S334L 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 16 55719076 55719076 C G SLC6A2 Missense_Mutation p.H222Q 0.36 tolerated(0.2) possibly_damaging(0.746) TCGA-EB-A44P-01 16 56904075 56904075 C T SLC12A3 Silent p.F223F 0.26 TCGA-EB-A44P-01 16 57765217 57765217 C T CCDC135 3'UTR 0.35 TCGA-EB-A44P-01 16 67991680 67991680 G A SLC12A4 Missense_Mutation p.S172F 0.29 deleterious(0) probably_damaging(0.978) TCGA-EB-A44P-01 16 70163017 70163017 C T PDPR Missense_Mutation p.S200F 0.17 deleterious(0.04) possibly_damaging(0.683) TCGA-EB-A44P-01 16 83998800 83998800 C T OSGIN1 Missense_Mutation p.P208S 0.45 tolerated(0.61) benign(0.026) TCGA-EB-A44P-01 16 84209775 84209775 C T DNAAF1 Silent p.P645P 0.33 TCGA-EB-A44P-01 17 10267724 10267724 C T MYH13 Missense_Mutation p.D42N 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-EB-A44P-01 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.42 tolerated(0.12) benign(0.252) TCGA-EB-A44P-01 17 12844428 12844428 A G ARHGAP44 Missense_Mutation p.N213S 0.34 tolerated(0.3) benign(0.038) TCGA-EB-A44P-01 17 16220068 16220068 C T PIGL Intron 0.23 TCGA-EB-A44P-01 17 18881273 18881273 C T FAM83G Missense_Mutation p.G569E 0.34 tolerated(0.69) benign(0.003) TCGA-EB-A44P-01 17 18882890 18882890 C T FAM83G Missense_Mutation p.G263R 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 17 26918842 26918842 G A SPAG5 Silent p.N437N 0.32 TCGA-EB-A44P-01 17 27018067 27018067 C T SUPT6H Missense_Mutation p.P1207S 0.26 tolerated(0.14) benign(0.119) TCGA-EB-A44P-01 17 27237296 27237296 T A PHF12 Silent p.S769S 0.29 TCGA-EB-A44P-01 17 3144091 3144091 G A OR1D4 RNA 0.18 TCGA-EB-A44P-01 17 33772265 33772265 C T SLFN13 Missense_Mutation p.M145I 0.56 deleterious(0.04) benign(0.007) TCGA-EB-A44P-01 17 37809935 37809935 C T STARD3 Missense_Mutation p.R51C 0.06 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 17 38179567 38179567 G A MED24 Silent p.S689S 0.21 TCGA-EB-A44P-01 17 38906841 38906841 G A KRT25 Silent p.S322S 0.34 TCGA-EB-A44P-01 17 39983726 39983726 C T NT5C3B Silent p.G240G 0.38 TCGA-EB-A44P-01 17 40993547 40993547 C T PSME3 Silent p.I252I 0.22 TCGA-EB-A44P-01 17 4462866 4462866 G A GGT6 Silent p.I110I 0.32 TCGA-EB-A44P-01 17 5064849 5064849 C T USP6 Missense_Mutation p.P952L 0.39 deleterious_low_confidence(0.03) benign(0.378) TCGA-EB-A44P-01 17 53084916 53084916 C T STXBP4 Silent p.S208S 0.37 TCGA-EB-A44P-01 17 55729465 55729465 C T MSI2 Missense_Mutation p.P245S 0.37 tolerated(0.16) benign(0.065) TCGA-EB-A44P-01 17 59763418 59763418 G A BRIP1 Missense_Mutation p.S895F 0.48 deleterious(0.02) possibly_damaging(0.623) TCGA-EB-A44P-01 17 62818034 62818034 A G RNU7-115P 3'Flank 0.17 TCGA-EB-A44P-01 17 71398134 71398134 G C SDK2 Silent p.P877P 0.55 TCGA-EB-A44P-01 17 73055678 73055678 C T KCTD2 Missense_Mutation p.S205F 0.41 deleterious(0) probably_damaging(0.944) TCGA-EB-A44P-01 17 73055679 73055679 C T KCTD2 Silent p.S205S 0.41 TCGA-EB-A44P-01 17 79612587 79612587 C T TSPAN10 Silent p.L202L 0.55 TCGA-EB-A44P-01 17 79988658 79988658 A C LRRC45 Silent p.R664R 0.67 TCGA-EB-A44P-01 17 80044361 80044361 G A FASN Silent p.A1167A 0.37 TCGA-EB-A44P-01 18 21136463 21136463 G A NPC1 Missense_Mutation p.S357L 0.30 deleterious(0.01) possibly_damaging(0.716) TCGA-EB-A44P-01 18 31325072 31325072 C T ASXL3 Silent p.L1754L 0.41 TCGA-EB-A44P-01 18 47479668 47479668 C T MYO5B Missense_Mutation p.V572M 0.35 deleterious(0.01) possibly_damaging(0.886) TCGA-EB-A44P-01 18 59217413 59217413 G A CDH20 Silent p.L617L 0.47 TCGA-EB-A44P-01 18 61471527 61471527 G A SERPINB7 Missense_Mutation p.M267I 0.44 deleterious(0.01) possibly_damaging(0.615) TCGA-EB-A44P-01 18 72245447 72245447 G A CNDP1 Missense_Mutation p.G351E 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 18 73000094 73000094 C T TSHZ1 Missense_Mutation p.T866I 0.38 deleterious(0) probably_damaging(0.979) TCGA-EB-A44P-01 19 10385469 10385469 C T ICAM1 Silent p.S32S 0.29 TCGA-EB-A44P-01 19 14024394 14024394 C T CC2D1A Missense_Mutation p.P231S 0.24 tolerated(0.1) benign(0.052) TCGA-EB-A44P-01 19 14024395 14024395 C T CC2D1A Missense_Mutation p.P231L 0.26 deleterious(0.03) benign(0.03) TCGA-EB-A44P-01 19 15375507 15375507 G A BRD4 Missense_Mutation p.P307L 0.33 possibly_damaging(0.713) TCGA-EB-A44P-01 19 15807303 15807303 C T CYP4F12 Missense_Mutation p.P460S 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 19 17743617 17743617 G A UNC13A Silent p.F1134F 0.28 TCGA-EB-A44P-01 19 21300274 21300274 T C ZNF714 Silent p.P268P 0.33 TCGA-EB-A44P-01 19 22154181 22154181 G A ZNF208 Missense_Mutation p.H1219Y 0.38 deleterious(0) possibly_damaging(0.692) TCGA-EB-A44P-01 19 37005999 37005999 T C ZNF260 Missense_Mutation p.M48V 0.35 tolerated(0.14) benign(0.002) TCGA-EB-A44P-01 19 37676177 37676177 G A ZNF585B Silent p.G754G 0.32 TCGA-EB-A44P-01 19 37903914 37903914 G A ZNF569 Missense_Mutation p.P549L 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 19 41008083 41008083 G A SPTBN4 Missense_Mutation p.E316K 0.46 tolerated(0.28) benign(0.137) TCGA-EB-A44P-01 19 43439669 43439669 G A PSG7 Missense_Mutation p.S106F 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 19 4537995 4537995 G A LRG1 Missense_Mutation p.A334V 0.43 tolerated(0.08) benign(0.088) TCGA-EB-A44P-01 19 47259861 47259861 C T FKRP Missense_Mutation p.S385L 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-EB-A44P-01 19 47503969 47503969 G A ARHGAP35 3'UTR 0.33 TCGA-EB-A44P-01 19 49900955 49900955 G A CCDC155 Missense_Mutation p.E150K 0.40 deleterious(0) possibly_damaging(0.79) TCGA-EB-A44P-01 19 50482401 50482401 C T VRK3 Missense_Mutation p.D459N 0.24 tolerated(0.19) benign(0.006) TCGA-EB-A44P-01 19 51132756 51132756 G A SYT3 Missense_Mutation p.T359I 0.35 deleterious(0) probably_damaging(0.991) TCGA-EB-A44P-01 19 51466682 51466682 G A KLK6 Silent p.I107I 0.21 TCGA-EB-A44P-01 19 53793264 53793264 C T BIRC8 Missense_Mutation p.G122R 0.30 deleterious(0) probably_damaging(0.968) TCGA-EB-A44P-01 19 53959453 53959453 C T ZNF761 RNA 0.38 TCGA-EB-A44P-01 19 54745716 54745716 G A LILRA6 Missense_Mutation p.P132S 0.22 deleterious(0.01) possibly_damaging(0.89) TCGA-EB-A44P-01 19 54818767 54818767 C T LILRA5 Silent p.V277V 0.33 TCGA-EB-A44P-01 19 55106812 55106812 G A LILRA1 Silent p.S202S 0.46 TCGA-EB-A44P-01 19 56156226 56156226 G A ZNF581 Missense_Mutation p.E97K 0.40 tolerated(0.35) benign(0.19) TCGA-EB-A44P-01 19 56515291 56515291 C T NLRP5 Missense_Mutation p.S91L 0.41 tolerated(0.78) benign(0.006) TCGA-EB-A44P-01 19 57133826 57133826 T C ZNF71 Missense_Mutation p.F391L 0.43 deleterious(0) probably_damaging(0.985) TCGA-EB-A44P-01 19 5729925 5729925 C T CATSPERD Silent p.L82L 0.49 TCGA-EB-A44P-01 19 57803216 57803216 C T ZNF460 Missense_Mutation p.T436I 0.44 tolerated(0.35) possibly_damaging(0.718) TCGA-EB-A44P-01 19 629923 629923 G A POLRMT Missense_Mutation p.P147S 0.42 tolerated(0.75) benign(0) TCGA-EB-A44P-01 19 8842237 8842237 C T OR2Z1 Missense_Mutation p.P283S 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 19 8953826 8953826 G A MBD3L1 Missense_Mutation p.E158K 0.29 tolerated(0.38) probably_damaging(0.977) TCGA-EB-A44P-01 19 9070233 9070233 G A MUC16 Missense_Mutation p.A5738V 0.41 unknown(0) TCGA-EB-A44P-01 19 9296743 9296743 G A OR7D2 Missense_Mutation p.D96N 0.39 deleterious_low_confidence(0.03) benign(0.004) TCGA-EB-A44P-01 19 9492313 9492313 T G ZNF177 Missense_Mutation p.S436A 0.39 deleterious(0.02) probably_damaging(0.987) TCGA-EB-A44P-01 19 994337 994337 C T WDR18 Silent p.A431A 0.35 TCGA-EB-A44P-01 1 112042569 112042569 T A ADORA3 Intron 0.33 TCGA-EB-A44P-01 1 117484366 117484366 C T PTGFRN Missense_Mutation p.P27S 0.25 tolerated(0.17) possibly_damaging(0.794) TCGA-EB-A44P-01 1 12337004 12337004 T A VPS13D Missense_Mutation p.V1120E 0.48 probably_damaging(0.996) TCGA-EB-A44P-01 1 12475169 12475169 G C VPS13D Missense_Mutation p.L4020F 0.43 probably_damaging(0.994) TCGA-EB-A44P-01 1 148932909 148932909 C T RP11-14N7.2 RNA 0.07 TCGA-EB-A44P-01 1 149916177 149916177 C G OTUD7B Missense_Mutation p.G704A 0.44 tolerated_low_confidence(0.39) benign(0.001) TCGA-EB-A44P-01 1 150788882 150788882 C T ARNT Silent p.R601R 0.41 TCGA-EB-A44P-01 1 152281546 152281546 G A FLG Missense_Mutation p.S1939F 0.36 possibly_damaging(0.485) TCGA-EB-A44P-01 1 152659481 152659481 C T LCE2B Silent p.G54G 0.44 TCGA-EB-A44P-01 1 153954574 153954574 C T RAB13 3'UTR 0.29 TCGA-EB-A44P-01 1 158261958 158261958 G A CD1C Missense_Mutation p.G138E 0.36 deleterious(0) probably_damaging(0.992) TCGA-EB-A44P-01 1 158435393 158435393 C T OR10K1 Silent p.V14V 0.50 TCGA-EB-A44P-01 1 16736184 16736184 G A SPATA21 Silent p.L167L 0.40 TCGA-EB-A44P-01 1 171173094 171173094 C T FMO2 Missense_Mutation p.R240C 0.36 tolerated(0.18) possibly_damaging(0.564) TCGA-EB-A44P-01 1 17964446 17964446 C T ARHGEF10L Missense_Mutation p.A664V 0.38 tolerated(0.07) benign(0.23) TCGA-EB-A44P-01 1 186925345 186925345 A T PLA2G4A Missense_Mutation p.E483V 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A44P-01 1 18808346 18808346 G A KLHDC7A Missense_Mutation p.D291N 0.32 deleterious(0.04) benign(0.139) TCGA-EB-A44P-01 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.39 deleterious(0) possibly_damaging(0.871) TCGA-EB-A44P-01 1 196918617 196918617 G A CFHR2 Missense_Mutation p.G31R 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 1 196927079 196927079 C T CFHR2 Silent p.F163F 0.42 TCGA-EB-A44P-01 1 196928177 196928177 G A CFHR2 Silent p.G260G 0.36 TCGA-EB-A44P-01 1 202710610 202710610 G A KDM5B Silent p.L944L 0.35 TCGA-EB-A44P-01 1 202710611 202710611 G A KDM5B Silent p.D943D 0.34 TCGA-EB-A44P-01 1 20474949 20474949 C T PLA2G2F 3'UTR 0.65 TCGA-EB-A44P-01 1 216538295 216538295 C T USH2A Missense_Mutation p.G262S 0.32 possibly_damaging(0.702) TCGA-EB-A44P-01 1 222801814 222801814 G A MIA3 Missense_Mutation p.A418T 0.32 tolerated(0.37) benign(0.003) TCGA-EB-A44P-01 1 223438036 223438036 C G SUSD4 Silent p.A220A 0.40 TCGA-EB-A44P-01 1 223959522 223959522 C T CAPN2 Missense_Mutation p.P639S 0.04 tolerated(0.16) benign(0.02) TCGA-EB-A44P-01 1 23111169 23111169 G A EPHB2 Silent p.K137K 0.40 TCGA-EB-A44P-01 1 231829808 231829808 A - DISC1 Frame_Shift_Del p.S102Vfs*7 0.11 TCGA-EB-A44P-01 1 233394378 233394378 A G PCNXL2 Silent p.A410A 0.43 TCGA-EB-A44P-01 1 23520477 23520477 G A HTR1D Missense_Mutation p.S79F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 1 240370455 240370455 C T FMN2 Silent p.F781F 0.44 TCGA-EB-A44P-01 1 24201640 24201640 G A CNR2 Silent p.I156I 0.43 TCGA-EB-A44P-01 1 247769700 247769700 G A OR2G3 Silent p.G271G 0.48 TCGA-EB-A44P-01 1 248004442 248004442 C T OR11L1 Missense_Mutation p.G253R 0.31 deleterious(0) probably_damaging(0.998) TCGA-EB-A44P-01 1 248308599 248308599 C T OR2M5 Silent p.Y50Y 0.31 TCGA-EB-A44P-01 1 36786686 36786686 C T SH3D21 Silent p.S743S 0.50 TCGA-EB-A44P-01 1 6266692 6266692 G A RNF207 Missense_Mutation p.E33K 0.57 tolerated(0.15) benign(0.047) TCGA-EB-A44P-01 1 67313308 67313308 G A WDR78 Missense_Mutation p.H384Y 0.15 deleterious(0.02) benign(0.163) TCGA-EB-A44P-01 1 86921125 86921125 T G CLCA2 Missense_Mutation p.I916S 0.40 tolerated(0.07) benign(0.393) TCGA-EB-A44P-01 1 95538487 95538487 G A ALG14 5'UTR 0.35 TCGA-EB-A44P-01 20 34802308 34802308 G A EPB41L1 Silent p.R738R 0.21 TCGA-EB-A44P-01 20 36859657 36859657 C T KIAA1755 Nonsense_Mutation p.W606* 0.50 TCGA-EB-A44P-01 20 44099042 44099042 G A WFDC2 Silent p.E31E 0.62 TCGA-EB-A44P-01 20 49565190 49565190 G T DPM1 Missense_Mutation p.P91T 0.34 tolerated(0.09) benign(0.101) TCGA-EB-A44P-01 20 50226691 50226691 G A ATP9A Missense_Mutation p.S862F 0.31 deleterious(0.04) possibly_damaging(0.707) TCGA-EB-A44P-01 20 52774074 52774074 A G CYP24A1 Silent p.F429F 0.29 TCGA-EB-A44P-01 20 60469970 60469970 T C CDH4 Missense_Mutation p.V352A 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A44P-01 20 62858828 62858828 G A MYT1 Silent p.R863R 0.30 TCGA-EB-A44P-01 21 41450905 41450905 C T DSCAM Splice_Site p.X1474_splice 0.17 TCGA-EB-A44P-01 21 47954546 47954546 G A DIP2A Missense_Mutation p.A530T 0.23 tolerated(0.36) benign(0.062) TCGA-EB-A44P-01 22 23090175 23090175 G A IGLV3-16 Silent p.R38R 0.30 TCGA-EB-A44P-01 22 23915632 23915632 G A IGLL1 Missense_Mutation p.P155S 0.26 tolerated_low_confidence(0.36) benign(0.099) TCGA-EB-A44P-01 22 24584053 24584053 C T SUSD2 Missense_Mutation p.T764I 0.31 tolerated(0.45) benign(0.044) TCGA-EB-A44P-01 22 24584054 24584054 C T SUSD2 Silent p.T764T 0.30 TCGA-EB-A44P-01 22 26692987 26692987 C T SEZ6L Missense_Mutation p.S368F 0.27 deleterious(0.04) probably_damaging(1) TCGA-EB-A44P-01 22 38206012 38206012 C T GCAT Missense_Mutation p.H85Y 0.38 tolerated_low_confidence(0.42) benign(0.002) TCGA-EB-A44P-01 22 40417436 40417436 G A FAM83F Missense_Mutation p.G308S 0.32 tolerated(0.39) benign(0.045) TCGA-EB-A44P-01 22 40417437 40417437 G A FAM83F Missense_Mutation p.G308D 0.32 tolerated(0.06) benign(0.197) TCGA-EB-A44P-01 22 42174851 42174851 C T MEI1 Intron 0.62 TCGA-EB-A44P-01 22 46652735 46652735 A T PKDREJ Missense_Mutation p.V2162D 0.38 deleterious(0) probably_damaging(0.966) TCGA-EB-A44P-01 22 46657221 46657221 C T PKDREJ Missense_Mutation p.A667T 0.39 deleterious(0) benign(0.435) TCGA-EB-A44P-01 22 46859827 46859827 G A CELSR1 Silent p.S1320S 0.28 TCGA-EB-A44P-01 22 50499909 50499909 G A MLC1 3'UTR 0.33 TCGA-EB-A44P-01 22 50599200 50599200 C T MOV10L1 Silent p.I1136I 0.31 TCGA-EB-A44P-01 2 100368697 100368697 G A AFF3 Missense_Mutation p.P355S 0.41 tolerated(0.3) benign(0.043) TCGA-EB-A44P-01 2 103300663 103300663 C T SLC9A2 Silent p.I431I 0.41 TCGA-EB-A44P-01 2 110927431 110927431 G A NPHP1 Silent p.I158I 0.46 TCGA-EB-A44P-01 2 112608370 112608370 G A ANAPC1 Missense_Mutation p.L545F 0.44 tolerated(0.28) possibly_damaging(0.593) TCGA-EB-A44P-01 2 113955327 113955327 G A PSD4 Missense_Mutation p.G821R 0.48 deleterious(0) probably_damaging(0.987) TCGA-EB-A44P-01 2 113994256 113994256 C T PAX8 Missense_Mutation p.G274R 0.36 tolerated(0.07) possibly_damaging(0.738) TCGA-EB-A44P-01 2 121740317 121740317 C T GLI2 Missense_Mutation p.S515F 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 2 125671778 125671778 A T CNTNAP5 Missense_Mutation p.E1278D 0.46 tolerated(0.06) benign(0.021) TCGA-EB-A44P-01 2 128387252 128387252 G A MYO7B Missense_Mutation p.D1527N 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 2 130831830 130831830 C T POTEF Missense_Mutation p.R1072H 0.33 deleterious_low_confidence(0.02) probably_damaging(0.921) TCGA-EB-A44P-01 2 131487206 131487206 C T GPR148 Missense_Mutation p.S161F 0.26 deleterious(0.01) possibly_damaging(0.776) TCGA-EB-A44P-01 2 133541577 133541577 G A NCKAP5 Missense_Mutation p.S936F 0.43 deleterious(0) probably_damaging(0.938) TCGA-EB-A44P-01 2 136548227 136548227 C T LCT Splice_Site p.X1779_splice 0.43 TCGA-EB-A44P-01 2 136548228 136548228 C T LCT Missense_Mutation p.A1779T 0.43 deleterious(0) probably_damaging(0.998) TCGA-EB-A44P-01 2 141110552 141110552 G A LRP1B Nonsense_Mutation p.Q3874* 0.43 TCGA-EB-A44P-01 2 15307151 15307151 G A NBAS 3'UTR 0.21 TCGA-EB-A44P-01 2 162751222 162751222 C T SLC4A10 Missense_Mutation p.R410C 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 2 16742485 16742485 C T FAM49A Missense_Mutation p.E192K 0.27 tolerated(0.33) benign(0.142) TCGA-EB-A44P-01 2 174074452 174074452 T A MLTK Intron 0.39 TCGA-EB-A44P-01 2 179479390 179479390 C T TTN Missense_Mutation p.G16284E 0.22 TCGA-EB-A44P-01 2 179641823 179641823 C T TTN Intron 0.32 TCGA-EB-A44P-01 2 186670303 186670304 - A FSIP2 Frame_Shift_Ins p.N5514Kfs*23 0.27 TCGA-EB-A44P-01 2 190557878 190557878 C T ANKAR Missense_Mutation p.P428S 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 2 20153665 20153665 G A WDR35 Missense_Mutation p.R455C 0.43 deleterious(0) possibly_damaging(0.77) TCGA-EB-A44P-01 2 210557364 210557364 C T MAP2 Missense_Mutation p.S157L 0.43 tolerated_low_confidence(0.12) benign(0.007) TCGA-EB-A44P-01 2 211515115 211515115 G A CPS1 Missense_Mutation p.E1151K 0.40 tolerated(0.38) benign(0.053) TCGA-EB-A44P-01 2 216904052 216904052 G A PECR Silent p.D286D 0.37 TCGA-EB-A44P-01 2 216965283 216965283 C T TMEM169 3'UTR 0.33 TCGA-EB-A44P-01 2 218712620 218712620 G A TNS1 Missense_Mutation p.L749F 0.24 tolerated(0.45) benign(0.003) TCGA-EB-A44P-01 2 220338526 220338526 C T SPEG Missense_Mutation p.R1450W 0.38 probably_damaging(0.953) TCGA-EB-A44P-01 2 224822170 224822170 C T MRPL44 5'UTR 0.33 TCGA-EB-A44P-01 2 227875029 227875029 C T COL4A4 Missense_Mutation p.G1508S 0.45 unknown(0) TCGA-EB-A44P-01 2 228883353 228883353 C T SPHKAP Silent p.K739K 0.33 TCGA-EB-A44P-01 2 230910935 230910935 C A SLC16A14 Missense_Mutation p.G303C 0.40 tolerated(0.09) probably_damaging(0.984) TCGA-EB-A44P-01 2 230911188 230911188 T C SLC16A14 Silent p.P218P 0.36 TCGA-EB-A44P-01 2 233899687 233899687 G A NEU2 Missense_Mutation p.E355K 0.40 deleterious(0.01) probably_damaging(0.943) TCGA-EB-A44P-01 2 29222135 29222135 G A FAM179A Silent p.K76K 0.50 TCGA-EB-A44P-01 2 56227909 56227909 C T MIR216B RNA 0.33 TCGA-EB-A44P-01 2 70052642 70052642 G A ANXA4 Missense_Mutation p.D321N 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-EB-A44P-01 2 74709479 74709479 G A CCDC142 Silent p.L162L 0.38 TCGA-EB-A44P-01 2 86270136 86270136 C T POLR1A Silent p.E1106E 0.29 TCGA-EB-A44P-01 2 95940496 95940496 C T PROM2 Missense_Mutation p.R55C 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-EB-A44P-01 2 96950181 96950181 G A SNRNP200 Missense_Mutation p.S1436F 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 3 111873889 111873889 A G SLC9C1 Silent p.V1124V 0.42 TCGA-EB-A44P-01 3 112969628 112969628 C T BOC Silent p.A108A 0.30 TCGA-EB-A44P-01 3 121707229 121707229 C T ILDR1 Silent p.R542R 0.50 TCGA-EB-A44P-01 3 121822654 121822654 G A CD86 Missense_Mutation p.M120I 0.34 tolerated(0.12) benign(0.035) TCGA-EB-A44P-01 3 122003369 122003369 G A CASR Silent p.K866K 0.53 TCGA-EB-A44P-01 3 124449234 124449234 G A UMPS 5'UTR 0.44 TCGA-EB-A44P-01 3 126916061 126916061 C T C3orf56 Missense_Mutation p.P178L 0.28 tolerated(0.22) possibly_damaging(0.851) TCGA-EB-A44P-01 3 13364912 13364912 C T NUP210 Silent p.Q1555Q 0.40 TCGA-EB-A44P-01 3 134079153 134079153 G A AMOTL2 Silent p.L560L 0.31 TCGA-EB-A44P-01 3 134079154 134079154 G A AMOTL2 Silent p.I559I 0.31 TCGA-EB-A44P-01 3 150690481 150690481 C T CLRN1 Silent p.Q5Q 0.35 TCGA-EB-A44P-01 3 156422763 156422763 C T TIPARP Missense_Mutation p.P606L 0.33 deleterious(0) probably_damaging(0.996) TCGA-EB-A44P-01 3 160155970 160155970 T C TRIM59 Silent p.V334V 0.38 TCGA-EB-A44P-01 3 183961398 183961398 G A ALG3 Missense_Mutation p.S318L 0.17 tolerated(0.15) benign(0.009) TCGA-EB-A44P-01 3 184010126 184010126 G T ECE2 3'UTR 0.30 TCGA-EB-A44P-01 3 186006556 186006556 C T DGKG Missense_Mutation p.D163N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44P-01 3 189582083 189582083 G A TP63 Silent p.K214K 0.40 TCGA-EB-A44P-01 3 190105939 190105939 G A CLDN16 Missense_Mutation p.A11T 0.26 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EB-A44P-01 3 33438579 33438579 C T UBP1 Missense_Mutation p.G410D 0.21 deleterious(0) probably_damaging(0.997) TCGA-EB-A44P-01 3 36485125 36485125 G A STAC Missense_Mutation p.M127I 0.49 deleterious(0.02) probably_damaging(0.977) TCGA-EB-A44P-01 3 38793718 38793718 C T SCN10A Missense_Mutation p.D583N 0.42 tolerated(0.2) benign(0.04) TCGA-EB-A44P-01 3 39171776 39171776 G A TTC21A Missense_Mutation p.R756K 0.53 tolerated(1) benign(0.02) TCGA-EB-A44P-01 3 42906332 42906332 G A ACKR2 Missense_Mutation p.G113E 0.40 tolerated(0.08) probably_damaging(0.999) TCGA-EB-A44P-01 3 46945255 46945255 G A PTH1R 3'UTR 0.45 TCGA-EB-A44P-01 3 48608328 48608328 C T COL7A1 Missense_Mutation p.G2413E 0.43 probably_damaging(0.999) TCGA-EB-A44P-01 3 52263076 52263076 G A TWF2 Missense_Mutation p.P342S 0.40 tolerated(0.12) benign(0.146) TCGA-EB-A44P-01 3 52263077 52263077 G A TWF2 Silent p.G341G 0.40 TCGA-EB-A44P-01 3 55922446 55922446 C T ERC2 Silent p.R845R 0.33 TCGA-EB-A44P-01 3 93595858 93595858 C T PROS1 Missense_Mutation p.D608N 0.39 tolerated(0.28) benign(0.075) TCGA-EB-A44P-01 4 104510867 104510867 G A TACR3 Missense_Mutation p.P457L 0.30 tolerated(0.2) benign(0.006) TCGA-EB-A44P-01 4 104510868 104510868 G T TACR3 Missense_Mutation p.P457T 0.29 tolerated(0.25) benign(0.212) TCGA-EB-A44P-01 4 120528212 120528212 C T PDE5A Silent p.K131K 0.38 TCGA-EB-A44P-01 4 122770018 122770018 G A BBS7 Silent p.I305I 0.41 TCGA-EB-A44P-01 4 123270690 123270690 G A KIAA1109 Missense_Mutation p.M4508I 0.25 probably_damaging(0.992) TCGA-EB-A44P-01 4 126411434 126411434 G A FAT4 Missense_Mutation p.G4486E 0.45 possibly_damaging(0.548) TCGA-EB-A44P-01 4 142053612 142053612 C T RNF150 Nonsense_Mutation p.W117* 0.38 TCGA-EB-A44P-01 4 153896105 153896105 C T FHDC1 Silent p.F554F 0.41 TCGA-EB-A44P-01 4 155718052 155718052 C T RBM46 Missense_Mutation p.P50S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 4 155749207 155749207 C T RBM46 Silent p.A530A 0.35 TCGA-EB-A44P-01 4 46099262 46099262 G A GABRG1 Missense_Mutation p.S70L 0.30 tolerated(0.06) possibly_damaging(0.649) TCGA-EB-A44P-01 4 48996765 48996765 G A CWH43 Missense_Mutation p.G214E 0.44 deleterious(0.02) probably_damaging(0.941) TCGA-EB-A44P-01 4 5141682 5141682 G A STK32B Missense_Mutation p.G35R 0.33 deleterious(0) probably_damaging(0.967) TCGA-EB-A44P-01 4 55981468 55981468 G A KDR Missense_Mutation p.L157F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 4 69096965 69096965 C T TMPRSS11B Silent p.L214L 0.33 TCGA-EB-A44P-01 4 70824644 70824644 C T CSN2 Missense_Mutation p.D43N 0.31 deleterious(0.04) benign(0.021) TCGA-EB-A44P-01 4 70824645 70824645 C T CSN2 Silent p.E42E 0.31 TCGA-EB-A44P-01 4 70864190 70864190 C T STATH Silent p.L12L 0.38 TCGA-EB-A44P-01 4 71275436 71275436 C T PROL1 Missense_Mutation p.L131F 0.33 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-EB-A44P-01 4 72631198 72631198 C T GC Missense_Mutation p.D161N 0.40 tolerated(0.05) benign(0.071) TCGA-EB-A44P-01 5 102310126 102310126 C T PAM Missense_Mutation p.P490L 0.37 tolerated(0.13) probably_damaging(0.996) TCGA-EB-A44P-01 5 121786837 121786837 C T SNCAIP Silent p.G765G 0.39 TCGA-EB-A44P-01 5 137089423 137089423 C T HNRNPA0 Silent p.E111E 0.46 TCGA-EB-A44P-01 5 13729599 13729599 C T DNAH5 Silent p.L3944L 0.40 TCGA-EB-A44P-01 5 137906690 137906690 G A HSPA9 Silent p.L123L 0.39 TCGA-EB-A44P-01 5 139251379 139251379 C T NRG2 Missense_Mutation p.E347K 0.41 tolerated(0.05) possibly_damaging(0.707) TCGA-EB-A44P-01 5 140167369 140167369 G A PCDHA1 Silent p.R498R 0.36 TCGA-EB-A44P-01 5 140167370 140167370 G A PCDHA1 Missense_Mutation p.V499M 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-EB-A44P-01 5 140187629 140187629 C T PCDHA4 Missense_Mutation p.S286L 0.32 tolerated_low_confidence(0.54) benign(0.072) TCGA-EB-A44P-01 5 140240953 140240953 C T AC005609.1 3'UTR 0.50 TCGA-EB-A44P-01 5 140554400 140554400 C T PCDHB7 Silent p.L662L 0.07 TCGA-EB-A44P-01 5 140558879 140558879 A T PCDHB8 Missense_Mutation p.I422F 0.07 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-EB-A44P-01 5 140594626 140594626 G A PCDHB13 Missense_Mutation p.E311K 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A44P-01 5 140625546 140625546 C T PCDHB15 Missense_Mutation p.P134S 0.54 tolerated_low_confidence(0.35) benign(0.001) TCGA-EB-A44P-01 5 140762691 140762691 C T PCDHGA7 Silent p.F75F 0.52 TCGA-EB-A44P-01 5 146775220 146775220 G T DPYSL3 Missense_Mutation p.T623N 0.46 deleterious(0.05) benign(0.342) TCGA-EB-A44P-01 5 147929810 147929810 G A HTR4 Silent p.F14F 0.26 TCGA-EB-A44P-01 5 154396482 154396482 C T KIF4B Silent p.I1021I 0.30 TCGA-EB-A44P-01 5 159682595 159682595 G A CCNJL Missense_Mutation p.S283F 0.35 deleterious(0.05) possibly_damaging(0.521) TCGA-EB-A44P-01 5 160047512 160047512 C T ATP10B Missense_Mutation p.G753D 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A44P-01 5 167627132 167627132 T C TENM2 Silent p.A1142A 0.50 TCGA-EB-A44P-01 5 168678429 168678429 T C SLIT3 Missense_Mutation p.K78E 0.21 tolerated(0.2) possibly_damaging(0.579) TCGA-EB-A44P-01 5 169267785 169267785 G A DOCK2 Missense_Mutation p.E910K 0.48 tolerated(0.47) benign(0.065) TCGA-EB-A44P-01 5 176759164 176759164 G A LMAN2 Silent p.L332L 0.53 TCGA-EB-A44P-01 5 179318495 179318495 G A TBC1D9B Silent p.L310L 0.32 TCGA-EB-A44P-01 5 35065985 35065985 G A PRLR Missense_Mutation p.L359F 0.57 deleterious(0.02) benign(0.055) TCGA-EB-A44P-01 5 35871202 35871202 G A IL7R Missense_Mutation p.G142R 0.43 tolerated(0.14) benign(0.003) TCGA-EB-A44P-01 5 36985459 36985459 A T NIPBL Missense_Mutation p.K726I 0.27 deleterious_low_confidence(0.01) benign(0.425) TCGA-EB-A44P-01 5 45262037 45262037 C A HCN1 Missense_Mutation p.A887S 0.21 tolerated_low_confidence(0.64) benign(0.004) TCGA-EB-A44P-01 5 68830651 68830651 C T OCLN Missense_Mutation p.S341F 0.35 tolerated(0.7) benign(0.006) TCGA-EB-A44P-01 5 68830652 68830652 C T OCLN Silent p.S341S 0.34 TCGA-EB-A44P-01 5 72874881 72874881 A G UTP15 Missense_Mutation p.I396V 0.29 tolerated(1) benign(0.007) TCGA-EB-A44P-01 5 90052344 90052344 C G GPR98 Missense_Mutation p.S3885C 0.25 possibly_damaging(0.669) TCGA-EB-A44P-01 5 95730697 95730697 C T PCSK1 Silent p.V585V 0.33 TCGA-EB-A44P-01 6 106552809 106552809 C T PRDM1 Silent p.S258S 0.64 TCGA-EB-A44P-01 6 117114236 117114236 C T GPRC6A Missense_Mutation p.R617K 0.74 tolerated(0.6) benign(0.027) TCGA-EB-A44P-01 6 118598702 118598702 G A SLC35F1 Nonsense_Mutation p.W280* 0.05 TCGA-EB-A44P-01 6 121526264 121526264 G A TBC1D32 Missense_Mutation p.R843C 0.57 deleterious(0.01) benign(0.014) TCGA-EB-A44P-01 6 142539822 142539822 C T VTA1 3'UTR 0.53 TCGA-EB-A44P-01 6 153073383 153073383 C T VIP Missense_Mutation p.S24L 0.68 tolerated(1) benign(0) TCGA-EB-A44P-01 6 160668298 160668298 G A SLC22A2 Missense_Mutation p.S292F 0.66 deleterious(0) probably_damaging(0.982) TCGA-EB-A44P-01 6 22570045 22570045 G A HDGFL1 Missense_Mutation p.E81K 0.35 deleterious(0) probably_damaging(0.985) TCGA-EB-A44P-01 6 22570069 22570069 C T HDGFL1 Nonsense_Mutation p.Q89* 0.38 TCGA-EB-A44P-01 6 3154051 3154051 G A TUBB2A 3'UTR 0.33 TCGA-EB-A44P-01 6 32188317 32188317 C T NOTCH4 Missense_Mutation p.V342M 0.39 tolerated(0.08) probably_damaging(1) TCGA-EB-A44P-01 6 35255471 35255471 C T ZNF76 Missense_Mutation p.S94F 0.35 deleterious(0) probably_damaging(0.959) TCGA-EB-A44P-01 6 46133271 46133271 T C ENPP5 Missense_Mutation p.T287A 0.45 tolerated(0.85) benign(0.001) TCGA-EB-A44P-01 6 52657684 52657684 G A GSTA1 Silent p.S172S 0.35 TCGA-EB-A44P-01 6 53010368 53010368 C T GCM1 Silent p.V21V 0.48 TCGA-EB-A44P-01 6 66205081 66205081 G A EYS Missense_Mutation p.P75S 0.51 deleterious_low_confidence(0.02) benign(0.199) TCGA-EB-A44P-01 6 74104638 74104638 C T DDX43 Missense_Mutation p.H4Y 0.20 deleterious_low_confidence(0.03) benign(0.014) TCGA-EB-A44P-01 6 7565663 7565663 C T DSP Silent p.I283I 0.37 TCGA-EB-A44P-01 6 76782143 76782143 G A IMPG1 Silent p.T21T 0.17 TCGA-EB-A44P-01 7 100383690 100383690 G A ZAN Silent p.G2301G 0.41 TCGA-EB-A44P-01 7 100551674 100551674 G A MUC3A Missense_Mutation p.G142E 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-EB-A44P-01 7 134254274 134254274 G A AKR1B15 Missense_Mutation p.G143E 0.33 deleterious(0.02) possibly_damaging(0.624) TCGA-EB-A44P-01 7 138417772 138417772 C G ATP6V0A4 Silent p.L586L 0.38 TCGA-EB-A44P-01 7 138719370 138719370 C T ZC3HAV1L Silent p.L140L 0.34 TCGA-EB-A44P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EB-A44P-01 7 141491063 141491063 C A TAS2R5 3'UTR 0.32 TCGA-EB-A44P-01 7 142481913 142481913 G A PRSS3P2 Splice_Site 0.28 TCGA-EB-A44P-01 7 143048830 143048830 G A CLCN1 Silent p.R913R 0.36 TCGA-EB-A44P-01 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.29 tolerated(0.95) benign(0) TCGA-EB-A44P-01 7 20739463 20739463 G A ABCB5 Missense_Mutation p.D724N 0.32 tolerated(0.09) benign(0.072) TCGA-EB-A44P-01 7 21550945 21550945 C T SP4 3'UTR 0.32 TCGA-EB-A44P-01 7 21826358 21826358 G A DNAH11 Nonsense_Mutation p.W3245* 0.40 TCGA-EB-A44P-01 7 2583247 2583247 C T BRAT1 Silent p.V260V 0.33 TCGA-EB-A44P-01 7 43916580 43916580 G A URGCP Missense_Mutation p.P828S 0.33 tolerated(0.1) benign(0.007) TCGA-EB-A44P-01 7 4722446 4722446 C T FOXK1 Silent p.F169F 0.55 TCGA-EB-A44P-01 7 48068433 48068433 C T SUN3 Missense_Mutation p.E35K 0.35 tolerated_low_confidence(0.3) benign(0.025) TCGA-EB-A44P-01 7 55273210 55273210 C T EGFR Missense_Mutation p.P1178L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 7 57188367 57188367 C T ZNF479 Nonsense_Mutation p.W252* 0.35 TCGA-EB-A44P-01 7 88962723 88962723 G A ZNF804B Missense_Mutation p.E143K 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-EB-A44P-01 7 99631442 99631442 T G ZKSCAN1 Missense_Mutation p.C438W 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 7 99818389 99818389 C T PVRIG Silent p.A201A 0.35 TCGA-EB-A44P-01 7 99818390 99818390 C A PVRIG Missense_Mutation p.P202T 0.35 tolerated(1) probably_damaging(0.991) TCGA-EB-A44P-01 8 103323714 103323714 A T UBR5 Missense_Mutation p.I810N 0.37 tolerated(0.08) possibly_damaging(0.731) TCGA-EB-A44P-01 8 103327038 103327038 G A UBR5 Missense_Mutation p.P610S 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-EB-A44P-01 8 133492810 133492810 C T KCNQ3 5'UTR 0.36 TCGA-EB-A44P-01 8 142506556 142506556 C T MROH5 Missense_Mutation p.M7I 0.41 tolerated_low_confidence(0.15) benign(0.055) TCGA-EB-A44P-01 8 143784646 143784646 C T LY6K Missense_Mutation p.R119C 0.29 tolerated(0.06) possibly_damaging(0.847) TCGA-EB-A44P-01 8 145583947 145583947 C T SLC52A2 Silent p.D265D 0.30 TCGA-EB-A44P-01 8 26227663 26227663 G A PPP2R2A Missense_Mutation p.G370R 0.69 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 8 32505384 32505384 G A NRG1 Intron 0.38 TCGA-EB-A44P-01 8 32505385 32505385 G A NRG1 Intron 0.38 TCGA-EB-A44P-01 8 48691030 48691030 G A PRKDC Missense_Mutation p.S3947F 0.30 probably_damaging(0.99) TCGA-EB-A44P-01 8 48855781 48855781 G A PRKDC Silent p.S318S 0.27 TCGA-EB-A44P-01 8 55538281 55538281 C T RP1 Silent p.T613T 0.31 TCGA-EB-A44P-01 8 76459901 76459901 G A HNF4G Missense_Mutation p.G113R 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 8 87242405 87242405 G A SLC7A13 Silent p.S34S 0.26 TCGA-EB-A44P-01 9 111641742 111641742 T A IKBKAP Missense_Mutation p.N1186Y 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-EB-A44P-01 9 132640700 132640700 C T USP20 Silent p.F831F 0.57 TCGA-EB-A44P-01 9 135866461 135866461 G T GFI1B 3'UTR 0.41 TCGA-EB-A44P-01 9 138011718 138011718 C T OLFM1 Silent p.P366P 0.33 TCGA-EB-A44P-01 9 18622285 18622285 T C ADAMTSL1 Silent p.D173D 0.31 TCGA-EB-A44P-01 9 21384687 21384687 C T IFNA2 3'UTR 0.44 TCGA-EB-A44P-01 9 21440990 21440990 T A IFNA1 Missense_Mutation p.C162S 0.35 deleterious(0) probably_damaging(0.994) TCGA-EB-A44P-01 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.81 deleterious(0) probably_damaging(1) TCGA-EB-A44P-01 9 32541774 32541774 C T TOPORS Missense_Mutation p.D917N 0.39 tolerated(0.06) unknown(0) TCGA-EB-A44P-01 9 32634732 32634732 C T TAF1L Silent p.R282R 0.41 TCGA-EB-A44P-01 9 35792814 35792814 C T NPR2 Missense_Mutation p.R137C 0.41 tolerated(0.05) possibly_damaging(0.892) TCGA-EB-A44P-01 9 35826156 35826156 C T FAM221B Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.997) TCGA-EB-A44P-01 9 39109254 39109254 C T CNTNAP3 Silent p.K756K 0.22 TCGA-EB-A44P-01 9 79118393 79118393 G A GCNT1 Missense_Mutation p.G366S 0.44 deleterious(0.02) probably_damaging(1) TCGA-EB-A44P-01 9 79118394 79118394 G A GCNT1 Missense_Mutation p.G366D 0.44 tolerated(0.06) probably_damaging(1) TCGA-EB-A44P-01 9 84235405 84235405 G A TLE1 Missense_Mutation p.S221F 0.26 deleterious(0.03) possibly_damaging(0.566) TCGA-EB-A44P-01 9 86482655 86482655 C T KIF27 Missense_Mutation p.E960K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A44P-01 9 86482656 86482656 C T KIF27 Silent p.K959K 0.31 TCGA-EB-A44P-01 9 86506413 86506413 C T KIF27 Missense_Mutation p.E536K 0.56 deleterious(0.01) benign(0.051) TCGA-EB-A44P-01 9 95285037 95285037 A G ECM2 Silent p.L38L 0.28 TCGA-EB-A44P-01 9 990888 990888 G A DMRT3 Silent p.R434R 0.39 TCGA-EB-A44P-01 X 100604666 100604666 C T BTK 3'UTR 0.43 TCGA-EB-A44P-01 X 10094318 10094318 T C WWC3 Missense_Mutation p.V693A 0.37 deleterious(0.02) benign(0.358) TCGA-EB-A44P-01 X 106016299 106016299 C T RNF128 Missense_Mutation p.S214F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A44P-01 X 106806386 106806386 G A FRMPD3 Missense_Mutation p.E391K 0.24 deleterious(0) probably_damaging(0.993) TCGA-EB-A44P-01 X 107920803 107920803 C T COL4A5 Silent p.G1294G 0.40 TCGA-EB-A44P-01 X 107924123 107924123 G A COL4A5 Missense_Mutation p.G1342R 0.40 probably_damaging(0.999) TCGA-EB-A44P-01 X 109924822 109924822 C T CHRDL1 Silent p.T348T 0.39 TCGA-EB-A44P-01 X 110544889 110544889 C T DCX 3'UTR 0.35 TCGA-EB-A44P-01 X 111020135 111020135 T C TRPC5 Silent p.E776E 0.39 TCGA-EB-A44P-01 X 12708415 12708415 C T FRMPD4 Silent p.L261L 0.42 TCGA-EB-A44P-01 X 127185882 127185882 T G ACTRT1 Missense_Mutation p.S102R 0.41 tolerated(0.13) probably_damaging(0.928) TCGA-EB-A44P-01 X 132160569 132160569 G A USP26 Silent p.P560P 0.33 TCGA-EB-A44P-01 X 132473317 132473317 C T GPC4 Missense_Mutation p.M71I 0.45 deleterious(0) probably_damaging(0.968) TCGA-EB-A44P-01 X 134292195 134292195 A G CT55 Missense_Mutation p.S156P 0.42 tolerated(0.2) possibly_damaging(0.695) TCGA-EB-A44P-01 X 134856796 134856796 G A CT45A1 3'UTR 0.03 TCGA-EB-A44P-01 X 137793226 137793226 C G FGF13 Intron 0.45 TCGA-EB-A44P-01 X 139865605 139865605 C T CDR1 3'UTR 0.50 TCGA-EB-A44P-01 X 139866023 139866023 C T CDR1 Missense_Mutation p.G170E 0.32 tolerated(0.28) benign(0.165) TCGA-EB-A44P-01 X 142803923 142803923 C T SPANXN2 5'UTR 0.44 TCGA-EB-A44P-01 X 153063533 153063533 G A SSR4 Missense_Mutation p.R120K 0.30 deleterious(0) probably_damaging(0.93) TCGA-EB-A44P-01 X 153063534 153063534 G A SSR4 Silent p.R120R 0.29 TCGA-EB-A44P-01 X 18283722 18283722 G A SCML2 Missense_Mutation p.P311S 0.43 tolerated(0.12) benign(0.006) TCGA-EB-A44P-01 X 27999382 27999382 C T DCAF8L1 Missense_Mutation p.E24K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-EB-A44P-01 X 3228050 3228050 G A MXRA5 Missense_Mutation p.P2732S 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A44P-01 X 34960954 34960954 G A FAM47B Silent p.G2G 0.46 TCGA-EB-A44P-01 X 48631879 48631879 C T GLOD5 3'UTR 0.24 TCGA-EB-A44P-01 X 48814363 48814363 C T OTUD5 Missense_Mutation p.G157E 0.75 tolerated(0.22) benign(0.383) TCGA-EB-A44P-01 X 5821259 5821259 G A NLGN4X Missense_Mutation p.S487L 0.29 deleterious(0) probably_damaging(0.925) TCGA-EB-A44P-01 X 83352802 83352802 G A RPS6KA6 Missense_Mutation p.L611F 0.38 deleterious(0.03) possibly_damaging(0.812) TCGA-EB-A44P-01 X 84559402 84559402 C T POF1B Missense_Mutation p.E505K 0.35 deleterious(0) probably_damaging(0.997) TCGA-EB-A44Q-06 10 103347150 103347150 G A POLL 5'UTR 0.32 TCGA-EB-A44Q-06 10 47087305 47087305 C T NPY4R Silent p.F174F 0.15 TCGA-EB-A44Q-06 11 10626023 10626023 C A MRVI1 Missense_Mutation p.A558S 0.10 tolerated(0.07) probably_damaging(0.998) TCGA-EB-A44Q-06 11 119149238 119149238 T A CBL Missense_Mutation p.C416S 0.50 deleterious(0) probably_damaging(0.998) TCGA-EB-A44Q-06 12 120580428 120580428 G T GCN1L1 Silent p.S1904S 0.15 TCGA-EB-A44Q-06 12 120583078 120583078 G A GCN1L1 Silent p.D1668D 0.16 TCGA-EB-A44Q-06 12 121017080 121017080 G A POP5 3'UTR 0.07 TCGA-EB-A44Q-06 12 121476582 121476582 C G OASL Missense_Mutation p.V65L 0.43 tolerated(0.12) benign(0.003) TCGA-EB-A44Q-06 12 124229192 124229192 C T ATP6V0A2 Silent p.L459L 0.05 TCGA-EB-A44Q-06 12 21995254 21995254 G A ABCC9 Missense_Mutation p.A1156V 0.32 deleterious(0) benign(0.287) TCGA-EB-A44Q-06 12 47181792 47181792 C T SLC38A4 Missense_Mutation p.G78E 0.28 deleterious(0) probably_damaging(0.995) TCGA-EB-A44Q-06 12 53241731 53241731 A T KRT78 Missense_Mutation p.L187M 0.16 deleterious(0.01) probably_damaging(1) TCGA-EB-A44Q-06 12 53241809 53241809 C G KRT78 Missense_Mutation p.V161L 0.14 tolerated(1) benign(0.022) TCGA-EB-A44Q-06 12 56721416 56721416 C T PAN2 Splice_Site p.X218_splice 0.36 TCGA-EB-A44Q-06 12 58197150 58197150 G T AVIL Silent p.V614V 0.04 TCGA-EB-A44Q-06 13 42763340 42763340 G A DGKH Missense_Mutation p.V603I 0.23 tolerated(0.28) benign(0.001) TCGA-EB-A44Q-06 14 24590600 24590600 G A DCAF11 Missense_Mutation p.D425N 0.30 tolerated(0.05) probably_damaging(0.948) TCGA-EB-A44Q-06 16 15931838 15931838 G A MYH11 Missense_Mutation p.A91V 0.16 probably_damaging(0.998) TCGA-EB-A44Q-06 16 31424258 31424258 G T ITGAD Missense_Mutation p.V603L 0.31 deleterious(0) probably_damaging(0.925) TCGA-EB-A44Q-06 16 8996279 8996279 G A USP7 Nonsense_Mutation p.R634* 0.15 TCGA-EB-A44Q-06 17 15535885 15535885 G C RP11-385D13.1 Missense_Mutation p.T318S 0.38 tolerated_low_confidence(0.1) benign(0.388) TCGA-EB-A44Q-06 17 27899412 27899412 C T TP53I13 Missense_Mutation p.P256S 0.24 tolerated(0.32) benign(0.034) TCGA-EB-A44Q-06 17 7187860 7187860 G A SLC2A4 Missense_Mutation p.D262N 0.17 tolerated(0.14) benign(0.012) TCGA-EB-A44Q-06 17 74078028 74078028 G A ZACN Missense_Mutation p.G316R 0.43 tolerated(0.44) probably_damaging(0.925) TCGA-EB-A44Q-06 18 29056182 29056182 A G DSG3 Missense_Mutation p.T987A 0.38 tolerated(0.24) benign(0.021) TCGA-EB-A44Q-06 19 2210753 2210753 T G DOT1L Missense_Mutation p.M417R 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.884) TCGA-EB-A44Q-06 19 42795785 42795785 C G CIC Missense_Mutation p.P925R 0.35 probably_damaging(0.987) TCGA-EB-A44Q-06 19 53304464 53304464 C T ZNF28 Missense_Mutation p.E212K 0.26 tolerated(0.05) possibly_damaging(0.872) TCGA-EB-A44Q-06 1 100152488 100152488 T C PALMD Silent p.S123S 0.20 TCGA-EB-A44Q-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.44 deleterious(0) benign(0.109) TCGA-EB-A44Q-06 1 156132735 156132735 G A SEMA4A Nonsense_Mutation p.W328* 0.23 TCGA-EB-A44Q-06 1 205350636 205350636 C T LEMD1 3'UTR 0.29 TCGA-EB-A44Q-06 1 22903371 22903371 T C EPHA8 Missense_Mutation p.V274A 0.57 tolerated(0.17) benign(0.053) TCGA-EB-A44Q-06 1 24019189 24019189 C A RPL11 Missense_Mutation p.L33M 0.28 deleterious(0) probably_damaging(0.99) TCGA-EB-A44Q-06 1 94471026 94471026 G A ABCA4 Nonsense_Mutation p.R2040* 0.27 TCGA-EB-A44Q-06 20 18576794 18576794 C T DTD1 Silent p.F93F 0.34 TCGA-EB-A44Q-06 21 41710218 41710218 C A DSCAM Silent p.P531P 0.06 TCGA-EB-A44Q-06 21 42843894 42843894 G A TMPRSS2 Missense_Mutation p.P342L 0.42 deleterious(0) probably_damaging(0.923) TCGA-EB-A44Q-06 21 45670710 45670710 C A DNMT3L Missense_Mutation p.A298S 0.38 tolerated(0.05) possibly_damaging(0.723) TCGA-EB-A44Q-06 22 24323152 24323153 - A GSTT2 Frame_Shift_Ins p.E44Gfs*18 0.14 TCGA-EB-A44Q-06 22 30780394 30780394 G A RNF215 Silent p.L226L 0.26 TCGA-EB-A44Q-06 2 26698274 26698274 C T OTOF Missense_Mutation p.D1027N 0.20 tolerated(0.15) benign(0.026) TCGA-EB-A44Q-06 2 61430335 61430335 G C USP34 Missense_Mutation p.H3150D 0.31 tolerated(1) benign(0.001) TCGA-EB-A44Q-06 2 9083352 9083352 C A MBOAT2 Missense_Mutation p.C88F 0.08 tolerated(0.71) benign(0.064) TCGA-EB-A44Q-06 3 47043969 47043969 C T NBEAL2 Missense_Mutation p.R1754W 0.36 deleterious(0) probably_damaging(0.973) TCGA-EB-A44Q-06 3 97677915 97677915 C G MINA Missense_Mutation p.V221L 0.23 tolerated(0.14) benign(0.009) TCGA-EB-A44Q-06 4 166981296 166981296 A C TLL1 Silent p.R655R 0.27 TCGA-EB-A44Q-06 5 14474120 14474120 G T TRIO Missense_Mutation p.M1999I 0.07 benign(0.037) TCGA-EB-A44Q-06 5 45262677 45262677 C A HCN1 Silent p.L673L 0.31 TCGA-EB-A44Q-06 5 5182346 5182346 C T ADAMTS16 Nonsense_Mutation p.Q231* 0.76 TCGA-EB-A44Q-06 5 64872830 64872830 A G PPWD1 Missense_Mutation p.E365G 0.27 deleterious(0.01) possibly_damaging(0.551) TCGA-EB-A44Q-06 5 77805791 77805791 G A LHFPL2 Silent p.C82C 0.36 TCGA-EB-A44Q-06 7 137363356 137363356 C T DGKI Missense_Mutation p.V185I 0.13 deleterious(0.05) benign(0.012) TCGA-EB-A44Q-06 8 86393017 86393017 A G CA2 Silent p.%3D 0.13 TCGA-EB-A44Q-06 8 87241944 87241944 T C SLC7A13 Missense_Mutation p.E188G 0.22 deleterious(0.01) possibly_damaging(0.906) TCGA-EB-A44Q-06 9 84549507 84549507 C T RP11-383M4.6 Intron 0.41 TCGA-EB-A44Q-06 X 125299816 125299816 G C DCAF12L2 Missense_Mutation p.A31G 0.09 tolerated(0.27) benign(0.005) TCGA-EB-A44Q-06 X 84525723 84525723 T G ZNF711 Missense_Mutation p.F392C 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A44R-06 10 18289716 18289716 C G SLC39A12 Missense_Mutation p.T574R 0.17 deleterious(0) probably_damaging(0.998) TCGA-EB-A44R-06 10 48371226 48371226 A G ZNF488 Missense_Mutation p.T232A 0.30 tolerated(1) benign(0) TCGA-EB-A44R-06 11 126301339 126301339 C T KIRREL3 Silent p.A557A 0.24 TCGA-EB-A44R-06 11 5462323 5462323 T C OR51I1 Missense_Mutation p.N141S 0.31 tolerated(1) benign(0.005) TCGA-EB-A44R-06 11 63520108 63520108 C G RTN3 Missense_Mutation p.D956E 0.25 deleterious(0.01) probably_damaging(1) TCGA-EB-A44R-06 12 107386774 107386774 G A CRY1 Silent p.G542G 0.09 TCGA-EB-A44R-06 12 112123498 112123498 G A BRAP Intron 0.18 TCGA-EB-A44R-06 12 120589192 120589192 G C GCN1L1 Missense_Mutation p.Q1356E 0.19 probably_damaging(0.986) TCGA-EB-A44R-06 12 49421874 49421874 G A KMT2D Silent p.I4811I 0.11 TCGA-EB-A44R-06 12 58145430 58145430 C T CDK4 Missense_Mutation p.R24H 0.24 deleterious(0) probably_damaging(0.911) TCGA-EB-A44R-06 13 31711467 31711467 C T HSPH1 Missense_Mutation p.M855I 0.11 deleterious(0.01) benign(0.073) TCGA-EB-A44R-06 13 48985942 48985942 C T LPAR6 Missense_Mutation p.M206I 0.12 tolerated(0.26) benign(0.05) TCGA-EB-A44R-06 13 58208165 58208165 C T PCDH17 Silent p.L495L 0.11 TCGA-EB-A44R-06 13 61084778 61084778 A T TDRD3 Missense_Mutation p.R344W 0.63 deleterious(0) probably_damaging(0.999) TCGA-EB-A44R-06 14 91367019 91367019 A G RPS6KA5 Missense_Mutation p.L394P 0.30 deleterious(0.01) benign(0.248) TCGA-EB-A44R-06 16 1568356 1568356 G A IFT140 Missense_Mutation p.T1348M 0.19 tolerated(0.16) benign(0.007) TCGA-EB-A44R-06 16 20422908 20422908 G C ACSM5 Missense_Mutation p.K34N 0.22 tolerated(0.63) benign(0.066) TCGA-EB-A44R-06 16 2514205 2514205 T G C16orf59 Missense_Mutation p.L377R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A44R-06 16 61761040 61761040 G A CDH8 Silent p.S498S 0.22 TCGA-EB-A44R-06 16 71713371 71713371 C T PHLPP2 Missense_Mutation p.E320K 0.53 tolerated(0.09) possibly_damaging(0.738) TCGA-EB-A44R-06 16 8941703 8941703 G A PMM2 3'UTR 0.23 TCGA-EB-A44R-06 17 62238236 62238236 G C TEX2 Missense_Mutation p.T917S 0.13 deleterious(0.01) probably_damaging(1) TCGA-EB-A44R-06 17 79615001 79615001 G A TSPAN10 Missense_Mutation p.E249K 0.18 deleterious(0.03) possibly_damaging(0.502) TCGA-EB-A44R-06 17 7990713 7990713 C A ALOX12B Silent p.S16S 0.30 TCGA-EB-A44R-06 19 14141641 14141641 C T RLN3 Nonsense_Mutation p.R104* 0.18 TCGA-EB-A44R-06 19 2811639 2811639 C T THOP1 Silent p.Y605Y 0.22 TCGA-EB-A44R-06 19 37209935 37209936 - A ZNF567 Frame_Shift_Ins p.L75Tfs*7 0.18 TCGA-EB-A44R-06 19 37974922 37974922 G A ZNF570 Missense_Mutation p.G133D 0.21 tolerated(0.96) benign(0.001) TCGA-EB-A44R-06 19 39994710 39994710 G C DLL3 Splice_Site p.X218_splice 0.18 TCGA-EB-A44R-06 1 100949960 100949960 A T CDC14A Missense_Mutation p.I364F 0.24 deleterious(0.03) possibly_damaging(0.565) TCGA-EB-A44R-06 1 115258744 115258744 C T NRAS Missense_Mutation p.G13D 0.87 deleterious(0.05) benign(0.004) TCGA-EB-A44R-06 1 162762536 162762536 A G HSD17B7 Silent p.A41A 0.31 TCGA-EB-A44R-06 1 170508539 170508539 A G GORAB Missense_Mutation p.T109A 0.08 tolerated(0.91) benign(0.001) TCGA-EB-A44R-06 1 17084270 17084270 C T MST1L RNA 0.06 TCGA-EB-A44R-06 1 171076936 171076936 G A FMO3 Missense_Mutation p.G148R 0.27 deleterious(0) probably_damaging(0.976) TCGA-EB-A44R-06 1 175304874 175304874 C A TNR Missense_Mutation p.G1202W 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A44R-06 1 176525788 176525788 C G PAPPA2 Missense_Mutation p.D110E 0.07 tolerated_low_confidence(0.32) benign(0.058) TCGA-EB-A44R-06 1 182827968 182827968 C A DHX9 Missense_Mutation p.P334H 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A44R-06 1 214170989 214170989 T G PROX1 Missense_Mutation p.F371V 0.41 tolerated(0.23) possibly_damaging(0.453) TCGA-EB-A44R-06 1 33276308 33276308 T C YARS Silent p.E88E 0.11 TCGA-EB-A44R-06 1 34258076 34258076 G T CSMD2 Missense_Mutation p.L460M 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A44R-06 1 982066 982066 C T AGRN Silent p.S1067S 0.14 TCGA-EB-A44R-06 22 17589456 17589456 C T IL17RA Silent p.R449R 0.11 TCGA-EB-A44R-06 22 40797677 40797677 C A SGSM3 Missense_Mutation p.Q30K 0.08 tolerated(0.05) benign(0.037) TCGA-EB-A44R-06 2 196621001 196621001 T G DNAH7 Silent p.A3814A 0.21 TCGA-EB-A44R-06 2 21230961 21230961 C A APOB Missense_Mutation p.G2927W 0.34 probably_damaging(1) TCGA-EB-A44R-06 2 234622111 234622111 G A UGT1A5 Silent p.A158A 0.22 TCGA-EB-A44R-06 2 46770278 46770278 C T RHOQ Silent p.N31N 0.10 TCGA-EB-A44R-06 3 193081035 193081035 G T ATP13A5 Missense_Mutation p.P125Q 0.15 tolerated(0.11) probably_damaging(1) TCGA-EB-A44R-06 3 31789497 31789497 G A OSBPL10 Missense_Mutation p.S282F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A44R-06 3 39225750 39225750 C T XIRP1 Silent p.V1729V 0.28 TCGA-EB-A44R-06 4 100532572 100532572 T C MTTP Missense_Mutation p.F651L 0.21 tolerated(0.29) benign(0.003) TCGA-EB-A44R-06 4 183600816 183600816 C A TENM3 Intron 0.17 TCGA-EB-A44R-06 4 3123134 3123134 T C HTT Silent p.R416R 0.17 TCGA-EB-A44R-06 4 437304 437304 C T ZNF721 Missense_Mutation p.A318T 0.06 deleterious(0.03) benign(0.003) TCGA-EB-A44R-06 5 101834475 101834475 G A SLCO6A1 Missense_Mutation p.A25V 0.18 tolerated(0.11) possibly_damaging(0.602) TCGA-EB-A44R-06 5 126860242 126860242 T G PRRC1 Silent p.S41S 0.30 TCGA-EB-A44R-06 5 140011717 140011717 C T CD14 Silent p.S284S 0.16 TCGA-EB-A44R-06 5 140719816 140719816 T C PCDHGA2 Silent p.D426D 0.18 TCGA-EB-A44R-06 5 140773913 140773913 C T PCDHGA8 Silent p.T511T 0.56 TCGA-EB-A44R-06 6 147631261 147631261 C T STXBP5 Missense_Mutation p.T320I 0.20 deleterious(0.01) possibly_damaging(0.532) TCGA-EB-A44R-06 6 30522855 30522855 C G GNL1 Missense_Mutation p.R118P 0.20 tolerated(0.09) benign(0.079) TCGA-EB-A44R-06 6 38879298 38879298 T C DNAH8 Silent p.G3048G 0.49 TCGA-EB-A44R-06 6 54735162 54735162 T C FAM83B Silent p.L40L 0.34 TCGA-EB-A44R-06 7 11514055 11514055 T C THSD7A Missense_Mutation p.T720A 0.06 tolerated(1) benign(0.001) TCGA-EB-A44R-06 7 19748461 19748461 G A TWISTNB Missense_Mutation p.S60L 0.07 deleterious(0.05) benign(0.116) TCGA-EB-A44R-06 7 34182916 34182916 G T BMPER Missense_Mutation p.R607L 0.23 deleterious(0.01) probably_damaging(0.926) TCGA-EB-A44R-06 8 10692194 10692194 C A SOX7 Missense_Mutation p.M37I 0.15 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-EB-A44R-06 8 1998896 1998896 G C MYOM2 Missense_Mutation p.V6L 0.11 tolerated(0.68) benign(0.002) TCGA-EB-A44R-06 8 40532282 40532282 G A ZMAT4 Missense_Mutation p.A173V 0.46 deleterious(0.01) possibly_damaging(0.833) TCGA-EB-A44R-06 9 73478014 73478014 C T TRPM3 Missense_Mutation p.R91H 0.48 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A44R-06 X 151128426 151128426 C T GABRE Missense_Mutation p.M223I 0.77 tolerated(0.78) probably_damaging(0.932) TCGA-EB-A4IQ-01 10 124672476 124672476 G A FAM24A 3'UTR 0.70 TCGA-EB-A4IQ-01 10 97396902 97396902 A G ALDH18A1 Missense_Mutation p.L169P 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A4IQ-01 11 14063135 14063135 G A SPON1 RNA 0.33 TCGA-EB-A4IQ-01 14 21238708 21238708 T G EDDM3B Silent p.V133V 0.37 TCGA-EB-A4IQ-01 15 43827034 43827034 G A PPIP5K1 Silent p.I1380I 0.26 TCGA-EB-A4IQ-01 16 89180886 89180886 C T ACSF3 Missense_Mutation p.R373C 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A4IQ-01 1 39889762 39889762 C T MACF1 Silent p.G3342G 0.10 TCGA-EB-A4IQ-01 1 45294274 45294274 C T PTCH2 Silent p.T498T 0.24 TCGA-EB-A4IQ-01 20 62705241 62705241 G A RGS19 Silent p.L207L 0.05 TCGA-EB-A4IQ-01 20 8862406 8862406 C T PLCB1 Silent p.S1187S 0.12 TCGA-EB-A4IQ-01 21 11038797 11038797 T C BAGE2 RNA 0.10 TCGA-EB-A4IQ-01 2 152490209 152490209 C T NEB Missense_Mutation p.D3125N 0.29 probably_damaging(0.957) TCGA-EB-A4IQ-01 4 115767006 115767006 G A NDST4 Silent p.P696P 0.32 TCGA-EB-A4IQ-01 5 57750746 57750746 T C PLK2 Missense_Mutation p.T620A 0.35 deleterious(0) possibly_damaging(0.51) TCGA-EB-A4IQ-01 6 166580164 166580164 C T T Silent p.S129S 0.16 TCGA-EB-A4IQ-01 7 150714208 150714208 A G ATG9B Missense_Mutation p.V735A 0.29 tolerated(0.31) possibly_damaging(0.529) TCGA-EB-A4IQ-01 8 139838954 139838954 G A COL22A1 Missense_Mutation p.R306W 0.35 unknown(0) TCGA-EB-A4IQ-01 9 21216993 21216993 G T IFNA16 Silent p.L104L 0.24 TCGA-EB-A4IQ-01 X 109696380 109696380 G C RGAG1 Missense_Mutation p.M845I 0.38 tolerated(0.19) benign(0.01) TCGA-EB-A4IQ-01 X 129362988 129362988 G A ZNF280C Silent p.C370C 0.21 TCGA-EB-A4IQ-01 X 140953275 140953275 G T MAGEC3 Missense_Mutation p.D48Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-EB-A4IQ-01 X 154221393 154221393 C A F8 Missense_Mutation p.R140M 0.06 tolerated(0.12) benign(0.043) TCGA-EB-A4IS-01 10 106976856 106976856 G A SORCS3 Missense_Mutation p.A904T 0.20 tolerated(0.18) benign(0.431) TCGA-EB-A4IS-01 10 121212236 121212236 G A GRK5 Silent p.V486V 0.25 TCGA-EB-A4IS-01 10 1230943 1230943 G A ADARB2 Missense_Mutation p.S634L 0.45 deleterious(0) possibly_damaging(0.858) TCGA-EB-A4IS-01 10 129537091 129537091 G A FOXI2 Silent p.G273G 0.29 TCGA-EB-A4IS-01 10 15639266 15639266 C T ITGA8 Missense_Mutation p.M717I 0.27 deleterious(0.03) benign(0.314) TCGA-EB-A4IS-01 10 26241146 26241146 T A MYO3A Missense_Mutation p.F36Y 0.39 tolerated(0.99) benign(0.14) TCGA-EB-A4IS-01 10 45941245 45941245 G A ALOX5 3'UTR 0.33 TCGA-EB-A4IS-01 10 50952732 50952732 G A OGDHL Silent p.L566L 0.46 TCGA-EB-A4IS-01 10 55700682 55700682 G A PCDH15 Missense_Mutation p.S1059F 0.13 tolerated(0.14) benign(0.038) TCGA-EB-A4IS-01 10 61831043 61831043 G A ANK3 Missense_Mutation p.P3199L 0.24 probably_damaging(0.994) TCGA-EB-A4IS-01 10 61831044 61831044 G A ANK3 Missense_Mutation p.P3199S 0.26 probably_damaging(0.992) TCGA-EB-A4IS-01 10 61835340 61835340 A C ANK3 Missense_Mutation p.F1767V 0.22 benign(0.004) TCGA-EB-A4IS-01 10 72100374 72100374 G A LRRC20 Missense_Mutation p.T56I 0.30 tolerated(0.1) possibly_damaging(0.507) TCGA-EB-A4IS-01 10 82329938 82329938 C T SH2D4B Silent p.L71L 0.30 TCGA-EB-A4IS-01 11 103908354 103908354 G A DDI1 Missense_Mutation p.M268I 0.15 deleterious(0.02) probably_damaging(0.931) TCGA-EB-A4IS-01 11 104819285 104819285 G A CASP4 Silent p.F300F 0.32 TCGA-EB-A4IS-01 11 10540570 10540570 A T RNF141 Intron 0.27 TCGA-EB-A4IS-01 11 105924856 105924856 G A KBTBD3 Missense_Mutation p.S187F 0.28 deleterious(0.02) probably_damaging(0.918) TCGA-EB-A4IS-01 11 1096334 1096334 C T MUC2 Missense_Mutation p.T2120M 0.19 unknown(0) TCGA-EB-A4IS-01 11 111590639 111590639 C T SIK2 Silent p.A469A 0.12 TCGA-EB-A4IS-01 11 118986926 118986926 C T C2CD2L Missense_Mutation p.S695F 0.38 deleterious(0.01) probably_damaging(0.951) TCGA-EB-A4IS-01 11 124012337 124012337 C T VWA5A Missense_Mutation p.P638S 0.28 tolerated(0.39) benign(0.002) TCGA-EB-A4IS-01 11 128680623 128680623 C A FLI1 Missense_Mutation p.Q367K 0.08 deleterious(0) probably_damaging(0.953) TCGA-EB-A4IS-01 11 129785672 129785672 G A PRDM10 Silent p.L807L 0.31 TCGA-EB-A4IS-01 11 132399018 132399018 G A OPCML Silent p.L155L 0.12 TCGA-EB-A4IS-01 11 132399019 132399019 G A OPCML Silent p.T154T 0.12 TCGA-EB-A4IS-01 11 1718720 1718720 C T KRTAP5-6 Missense_Mutation p.S82F 0.28 deleterious_low_confidence(0.05) unknown(0) TCGA-EB-A4IS-01 11 17537831 17537831 C T USH1C Missense_Mutation p.G406E 0.50 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EB-A4IS-01 11 20112483 20112483 G A NAV2 Missense_Mutation p.M1916I 0.15 deleterious(0.04) probably_damaging(0.956) TCGA-EB-A4IS-01 11 20112485 20112485 A G NAV2 Missense_Mutation p.K1917R 0.14 deleterious(0) probably_damaging(0.993) TCGA-EB-A4IS-01 11 21250989 21250989 C T NELL1 Missense_Mutation p.T513I 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-EB-A4IS-01 11 26620532 26620532 G A ANO3 Missense_Mutation p.G553E 0.21 deleterious(0.04) probably_damaging(1) TCGA-EB-A4IS-01 11 32438053 32438053 C T WT1 Nonsense_Mutation p.W328* 0.15 TCGA-EB-A4IS-01 11 32953892 32953892 C T QSER1 Missense_Mutation p.S234F 0.20 deleterious(0) benign(0.377) TCGA-EB-A4IS-01 11 34156132 34156132 G A NAT10 Missense_Mutation p.G637E 0.25 tolerated(0.18) benign(0.141) TCGA-EB-A4IS-01 11 34184278 34184278 G A ABTB2 Missense_Mutation p.A688V 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 11 34485777 34485777 A T CAT Missense_Mutation p.T441S 0.15 tolerated(1) benign(0.003) TCGA-EB-A4IS-01 11 400005 400005 G A PKP3 Missense_Mutation p.D438N 0.19 deleterious(0.02) possibly_damaging(0.664) TCGA-EB-A4IS-01 11 40135956 40135956 C T LRRC4C Missense_Mutation p.M629I 0.11 deleterious_low_confidence(0.01) benign(0.002) TCGA-EB-A4IS-01 11 43427388 43427388 C T TTC17 Missense_Mutation p.P550S 0.22 deleterious(0) possibly_damaging(0.642) TCGA-EB-A4IS-01 11 43427389 43427389 C T TTC17 Missense_Mutation p.P550L 0.22 deleterious(0) possibly_damaging(0.521) TCGA-EB-A4IS-01 11 45671831 45671831 C T CHST1 Missense_Mutation p.D215N 0.17 tolerated(0.38) probably_damaging(1) TCGA-EB-A4IS-01 11 46884198 46884198 G A LRP4 Missense_Mutation p.P1782S 0.08 tolerated(0.14) benign(0.115) TCGA-EB-A4IS-01 11 4703870 4703870 G A OR51E2 Silent p.F24F 0.14 TCGA-EB-A4IS-01 11 48346880 48346880 C T OR4C3 Missense_Mutation p.H130Y 0.15 deleterious(0.01) benign(0.081) TCGA-EB-A4IS-01 11 48510647 48510647 C T OR4A47 Silent p.I101I 0.22 TCGA-EB-A4IS-01 11 4929481 4929481 G A OR51A7 Silent p.K294K 0.15 TCGA-EB-A4IS-01 11 5080314 5080314 C T OR52E2 Missense_Mutation p.E182K 0.12 deleterious(0.01) probably_damaging(1) TCGA-EB-A4IS-01 11 55062969 55062969 T A TRIM51HP RNA 0.26 TCGA-EB-A4IS-01 11 55433486 55433486 C A OR4C6 Missense_Mutation p.P282T 0.30 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EB-A4IS-01 11 56000423 56000423 C T OR5T2 Missense_Mutation p.G80E 0.30 deleterious(0) benign(0.417) TCGA-EB-A4IS-01 11 5841871 5841871 G A OR52N2 Silent p.Q102Q 0.33 TCGA-EB-A4IS-01 11 5878756 5878756 C T OR52E8 Silent p.Q59Q 0.25 TCGA-EB-A4IS-01 11 59620489 59620489 G A TCN1 Missense_Mutation p.R421C 0.10 deleterious(0.01) benign(0.17) TCGA-EB-A4IS-01 11 59620490 59620490 G A TCN1 Silent p.V420V 0.10 TCGA-EB-A4IS-01 11 59940566 59940566 C T MS4A6A Missense_Mutation p.E224K 0.23 deleterious(0) probably_damaging(0.993) TCGA-EB-A4IS-01 11 6191051 6191051 G A OR52B2 Missense_Mutation p.P169L 0.13 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A4IS-01 11 62384058 62384058 G C B3GAT3 Missense_Mutation p.R277G 0.16 tolerated(0.11) benign(0.013) TCGA-EB-A4IS-01 11 62747348 62747348 G A SLC22A6 Silent p.I370I 0.13 TCGA-EB-A4IS-01 11 62782218 62782218 C T SLC22A8 Silent p.E71E 0.17 TCGA-EB-A4IS-01 11 63487923 63487923 C T RTN3 Missense_Mutation p.S650F 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A4IS-01 11 63487924 63487924 C T RTN3 Silent p.S650S 0.26 TCGA-EB-A4IS-01 11 63883877 63883877 G A FLRT1 Silent p.T46T 0.32 TCGA-EB-A4IS-01 11 63883878 63883878 G A FLRT1 Missense_Mutation p.E47K 0.31 tolerated(0.5) benign(0.013) TCGA-EB-A4IS-01 11 64023076 64023076 C T PLCB3 Silent p.L195L 0.12 TCGA-EB-A4IS-01 11 64622857 64622857 G A EHD1 Silent p.Y339Y 0.19 TCGA-EB-A4IS-01 11 65486682 65486682 G C KAT5 3'UTR 0.35 TCGA-EB-A4IS-01 11 66113976 66113976 G A B3GNT1 Silent p.F347F 0.26 TCGA-EB-A4IS-01 11 66192177 66192177 C G NPAS4 Missense_Mutation p.P606A 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A4IS-01 11 67767143 67767143 C T UNC93B1 Missense_Mutation p.G134R 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 11 67926251 67926251 G A SUV420H1 Missense_Mutation p.P521L 0.14 deleterious(0.03) benign(0.06) TCGA-EB-A4IS-01 11 67926252 67926252 G A SUV420H1 Missense_Mutation p.P521S 0.14 tolerated(1) benign(0.001) TCGA-EB-A4IS-01 11 69978066 69978066 C T ANO1 Missense_Mutation p.P380L 0.21 deleterious(0) possibly_damaging(0.869) TCGA-EB-A4IS-01 11 7618866 7618866 C T PPFIBP2 Nonsense_Mutation p.Q150* 0.27 TCGA-EB-A4IS-01 11 7960392 7960392 G A OR10A3 Silent p.L226L 0.22 TCGA-EB-A4IS-01 11 82536106 82536106 G A PRCP Silent p.L466L 0.16 TCGA-EB-A4IS-01 11 93088625 93088625 A T CCDC67 Missense_Mutation p.M40L 0.18 tolerated(0.05) probably_damaging(0.936) TCGA-EB-A4IS-01 12 102590799 102590799 C T PMCH Missense_Mutation p.D134N 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A4IS-01 12 121746388 121746388 G A ANAPC5 Silent p.Y721Y 0.23 TCGA-EB-A4IS-01 12 124288315 124288315 A T DNAH10 Missense_Mutation p.I790L 0.12 benign(0.056) TCGA-EB-A4IS-01 12 124421922 124421922 C T CCDC92 Missense_Mutation p.E227K 0.10 tolerated(0.27) possibly_damaging(0.631) TCGA-EB-A4IS-01 12 126138492 126138492 G A TMEM132B Missense_Mutation p.E825K 0.14 tolerated(0.15) possibly_damaging(0.851) TCGA-EB-A4IS-01 12 132688134 132688134 G A GALNT9 Silent p.A27A 0.35 TCGA-EB-A4IS-01 12 132688163 132688163 G A GALNT9 Missense_Mutation p.P18S 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 12 13906319 13906319 G A GRIN2B Silent p.I314I 0.21 TCGA-EB-A4IS-01 12 15262099 15262099 G A RERG Missense_Mutation p.S182F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 12 18499676 18499676 C T PIK3C2G Missense_Mutation p.P511S 0.12 tolerated(0.18) benign(0.012) TCGA-EB-A4IS-01 12 18499677 18499677 C T PIK3C2G Missense_Mutation p.P511L 0.12 deleterious(0.04) benign(0.018) TCGA-EB-A4IS-01 12 18872381 18872381 G A PLCZ1 Missense_Mutation p.L185F 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-EB-A4IS-01 12 18891609 18891609 G A CAPZA3 Missense_Mutation p.G136E 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 12 22796732 22796732 C T ETNK1 Silent p.G153G 0.27 TCGA-EB-A4IS-01 12 29908761 29908761 G A TMTC1 Silent p.F204F 0.32 TCGA-EB-A4IS-01 12 32136376 32136376 C T KIAA1551 Silent p.T829T 0.22 TCGA-EB-A4IS-01 12 39980086 39980086 G A ABCD2 Missense_Mutation p.L554F 0.21 tolerated(0.1) benign(0.056) TCGA-EB-A4IS-01 12 46316926 46316926 A G SCAF11 Silent p.S1306S 0.15 TCGA-EB-A4IS-01 12 48739252 48739252 C T ZNF641 Silent p.L108L 0.18 TCGA-EB-A4IS-01 12 49425644 49425644 G A KMT2D Nonsense_Mutation p.R4282* 0.09 TCGA-EB-A4IS-01 12 50616159 50616159 T - LIMA1 Frame_Shift_Del p.N92Tfs*17 0.16 TCGA-EB-A4IS-01 12 51853752 51853752 G A SLC4A8 Missense_Mutation p.M291I 0.20 deleterious(0.02) benign(0.118) TCGA-EB-A4IS-01 12 52754584 52754584 C A KRT85 3'UTR 0.23 TCGA-EB-A4IS-01 12 52960824 52960824 C T KRT74 Missense_Mutation p.G507R 0.32 deleterious_low_confidence(0.02) benign(0.126) TCGA-EB-A4IS-01 12 54348980 54348980 G A HOXC12 Silent p.E89E 0.20 TCGA-EB-A4IS-01 12 54686568 54686568 G A NFE2 Missense_Mutation p.P238S 0.15 tolerated(0.05) possibly_damaging(0.612) TCGA-EB-A4IS-01 12 55421006 55421006 G A NEUROD4 Silent p.G261G 0.16 TCGA-EB-A4IS-01 12 57860100 57860100 G A GLI1 Silent p.R280R 0.20 TCGA-EB-A4IS-01 12 57922304 57922304 G A MBD6 Silent p.K927K 0.11 TCGA-EB-A4IS-01 12 64041132 64041132 G A DPY19L2 Missense_Mutation p.S201F 0.12 tolerated(0.66) benign(0.008) TCGA-EB-A4IS-01 12 68551724 68551724 C T IFNG Missense_Mutation p.R112Q 0.09 tolerated(0.3) benign(0.002) TCGA-EB-A4IS-01 12 80014972 80014972 C T PAWR Missense_Mutation p.E178K 0.14 deleterious(0.01) possibly_damaging(0.749) TCGA-EB-A4IS-01 12 80732899 80732899 G A OTOGL Silent p.Q1626Q 0.29 TCGA-EB-A4IS-01 12 9009814 9009814 G A A2ML1 Missense_Mutation p.S968N 0.30 tolerated(0.3) benign(0.014) TCGA-EB-A4IS-01 12 92814806 92814806 C T CLLU1OS Missense_Mutation p.E96K 0.27 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EB-A4IS-01 12 95228785 95228785 G A MIR492 3'Flank 0.23 TCGA-EB-A4IS-01 13 108882071 108882071 T C ABHD13 Missense_Mutation p.S169P 0.35 deleterious(0.01) possibly_damaging(0.555) TCGA-EB-A4IS-01 13 114531652 114531652 G A GAS6 Silent p.V392V 0.26 TCGA-EB-A4IS-01 13 19999087 19999087 C T TPTE2 Missense_Mutation p.R489K 0.29 tolerated(0.06) possibly_damaging(0.53) TCGA-EB-A4IS-01 13 29008254 29008254 G A FLT1 Missense_Mutation p.T206I 0.17 tolerated(0.42) benign(0.013) TCGA-EB-A4IS-01 13 33628324 33628324 G A KL Missense_Mutation p.E414K 0.18 deleterious(0) probably_damaging(0.991) TCGA-EB-A4IS-01 13 33634925 33634925 C T KL Missense_Mutation p.S570F 0.25 tolerated(0.13) benign(0.033) TCGA-EB-A4IS-01 13 35770194 35770194 G A NBEA Silent p.L1707L 0.13 TCGA-EB-A4IS-01 13 42264381 42264381 G A VWA8 Silent p.I1299I 0.09 TCGA-EB-A4IS-01 13 42875398 42875398 C T AKAP11 Missense_Mutation p.P839L 0.15 tolerated(0.16) benign(0.287) TCGA-EB-A4IS-01 13 50586194 50586194 G A TRIM13 Missense_Mutation p.G43R 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A4IS-01 13 76395371 76395371 G A LMO7 Missense_Mutation p.D523N 0.28 tolerated(0.06) possibly_damaging(0.831) TCGA-EB-A4IS-01 13 97485123 97485123 C T HS6ST3 Missense_Mutation p.L363F 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A4IS-01 14 105418833 105418833 G A AHNAK2 Silent p.S985S 0.22 TCGA-EB-A4IS-01 14 105418834 105418834 G A AHNAK2 Missense_Mutation p.S985F 0.22 possibly_damaging(0.808) TCGA-EB-A4IS-01 14 106236190 106236190 G A IGHG3 Silent p.F205F 0.15 TCGA-EB-A4IS-01 14 106691941 106691941 C T IGHV3-21 Missense_Mutation p.G28E 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-EB-A4IS-01 14 106963009 106963009 C T IGHV1-45 Silent p.R91R 0.32 TCGA-EB-A4IS-01 14 20295949 20295949 C T OR4N2 Silent p.L114L 0.10 TCGA-EB-A4IS-01 14 21161793 21161793 G A ANG Missense_Mutation p.A24T 0.31 tolerated(0.19) benign(0.098) TCGA-EB-A4IS-01 14 31535349 31535349 C T AP4S1 5'UTR 0.34 TCGA-EB-A4IS-01 14 38723753 38723753 C T CLEC14A 3'UTR 0.07 TCGA-EB-A4IS-01 14 45693277 45693277 G A MIS18BP1 Missense_Mutation p.S838F 0.30 deleterious(0) benign(0.403) TCGA-EB-A4IS-01 14 52905928 52905928 G A TXNDC16 Missense_Mutation p.H730Y 0.32 deleterious(0.01) benign(0.001) TCGA-EB-A4IS-01 14 55604098 55604100 GAC - LGALS3 In_Frame_Del p.D3del 0.15 TCGA-EB-A4IS-01 14 58056015 58056015 C T SLC35F4 Nonsense_Mutation p.W205* 0.22 TCGA-EB-A4IS-01 14 63174573 63174573 G A KCNH5 Missense_Mutation p.R874C 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EB-A4IS-01 14 63179367 63179367 G A KCNH5 Intron 0.36 TCGA-EB-A4IS-01 14 68248219 68248219 G A ZFYVE26 Missense_Mutation p.P1467L 0.11 tolerated(0.15) benign(0.019) TCGA-EB-A4IS-01 14 70263783 70263783 G A SLC10A1 Silent p.I30I 0.15 TCGA-EB-A4IS-01 14 76330135 76330135 C T TTLL5 Missense_Mutation p.A1151V 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 14 77576282 77576282 C T CIPC Silent p.T88T 0.33 TCGA-EB-A4IS-01 14 93117951 93117951 C T RIN3 Missense_Mutation p.P186L 0.17 tolerated(0.43) unknown(0) TCGA-EB-A4IS-01 14 93760709 93760709 G A BTBD7 Silent p.I219I 0.10 TCGA-EB-A4IS-01 14 94395531 94395531 C T FAM181A 3'UTR 0.14 TCGA-EB-A4IS-01 14 96772020 96772020 G A ATG2B Missense_Mutation p.R1547C 0.06 deleterious(0) probably_damaging(0.993) TCGA-EB-A4IS-01 15 100215612 100215612 T C MEF2A Silent p.L209L 0.11 TCGA-EB-A4IS-01 15 100692836 100692836 G A ADAMTS17 Missense_Mutation p.T485I 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A4IS-01 15 31294199 31294199 T G TRPM1 Silent p.P1585P 0.27 TCGA-EB-A4IS-01 15 31294201 31294201 G T TRPM1 Missense_Mutation p.P1585T 0.27 deleterious_low_confidence(0.01) benign(0.075) TCGA-EB-A4IS-01 15 34376473 34376473 C A EMC7 3'UTR 0.32 TCGA-EB-A4IS-01 15 34649405 34649405 A G NUTM1 Missense_Mutation p.S1038G 0.21 tolerated(0.15) benign(0.015) TCGA-EB-A4IS-01 15 40398134 40398134 G A BMF Missense_Mutation p.L52F 0.27 tolerated(0.12) benign(0.019) TCGA-EB-A4IS-01 15 41772897 41772897 C T RTF1 3'UTR 0.39 TCGA-EB-A4IS-01 15 45388239 45388239 G A DUOX2 Silent p.F1289F 0.20 TCGA-EB-A4IS-01 15 45658338 45658338 G A GATM Missense_Mutation p.S295F 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A4IS-01 15 48808503 48808503 G A FBN1 Missense_Mutation p.P402S 0.14 benign(0.051) TCGA-EB-A4IS-01 15 52416749 52416749 T G GNB5 Missense_Mutation p.H366P 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A4IS-01 15 52611301 52611301 G A MYO5A Silent p.L1705L 0.08 TCGA-EB-A4IS-01 15 54916089 54916089 G A UNC13C Missense_Mutation p.R2099K 0.26 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-EB-A4IS-01 15 56958729 56958729 G A ZNF280D Missense_Mutation p.R620C 0.10 tolerated(0.13) possibly_damaging(0.677) TCGA-EB-A4IS-01 15 62209576 62209576 C T VPS13C Silent p.R2673R 0.07 TCGA-EB-A4IS-01 15 63991031 63991031 C G HERC1 Missense_Mutation p.G1601R 0.15 possibly_damaging(0.828) TCGA-EB-A4IS-01 15 64791500 64791500 T A ZNF609 5'UTR 0.40 TCGA-EB-A4IS-01 15 67528372 67528372 G A AAGAB Silent p.I132I 0.27 TCGA-EB-A4IS-01 15 72968607 72968607 C T HIGD2B Missense_Mutation p.E37K 0.16 deleterious(0.02) benign(0.065) TCGA-EB-A4IS-01 15 74178913 74178913 G A TBC1D21 Missense_Mutation p.R246H 0.08 deleterious(0.05) benign(0.027) TCGA-EB-A4IS-01 15 74178914 74178914 T A TBC1D21 Silent p.R246R 0.08 TCGA-EB-A4IS-01 15 75341549 75341549 C T PPCDC Silent p.F196F 0.23 TCGA-EB-A4IS-01 15 76523697 76523697 A G ETFA Silent p.L287L 0.37 TCGA-EB-A4IS-01 15 84651504 84651504 G T ADAMTSL3 Missense_Mutation p.D1042Y 0.18 deleterious(0.01) benign(0.139) TCGA-EB-A4IS-01 15 89402035 89402035 C T ACAN Silent p.V2073V 0.13 TCGA-EB-A4IS-01 16 10273945 10273945 G A GRIN2A Silent p.A108A 0.09 TCGA-EB-A4IS-01 16 1250392 1250392 C T CACNA1H Missense_Mutation p.P314S 0.30 tolerated(0.09) benign(0.053) TCGA-EB-A4IS-01 16 1250393 1250393 C T CACNA1H Missense_Mutation p.P314L 0.33 deleterious(0.02) benign(0.186) TCGA-EB-A4IS-01 16 1259342 1259342 C T CACNA1H Missense_Mutation p.P1225L 0.23 tolerated(0.15) probably_damaging(0.919) TCGA-EB-A4IS-01 16 18602531 18602531 G A ABCC6P1 RNA 0.16 TCGA-EB-A4IS-01 16 19195320 19195320 G A SYT17 Missense_Mutation p.E268K 0.28 tolerated(0.1) possibly_damaging(0.592) TCGA-EB-A4IS-01 16 19490826 19490826 C T TMC5 Missense_Mutation p.S748F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 16 19547658 19547658 C T CCP110 Missense_Mutation p.P223S 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A4IS-01 16 19567048 19567048 G A C16orf62 Silent p.G88G 0.21 TCGA-EB-A4IS-01 16 20430781 20430781 G A ACSM5 Intron 0.28 TCGA-EB-A4IS-01 16 2156471 2156471 C T PKD1 Missense_Mutation p.G2473R 0.30 probably_damaging(0.999) TCGA-EB-A4IS-01 16 2257215 2257215 C T MLST8 Nonsense_Mutation p.Q148* 0.20 TCGA-EB-A4IS-01 16 27460701 27460701 G A IL21R 3'UTR 0.36 TCGA-EB-A4IS-01 16 27781295 27781295 C T KIAA0556 Silent p.F1363F 0.19 TCGA-EB-A4IS-01 16 2882181 2882181 G A ZG16B 3'UTR 0.23 TCGA-EB-A4IS-01 16 30035639 30035639 C T C16orf92 3'UTR 0.40 TCGA-EB-A4IS-01 16 30198152 30198152 G A CORO1A Missense_Mutation p.D113N 0.11 tolerated(0.08) benign(0.047) TCGA-EB-A4IS-01 16 30567174 30567174 G A ZNF764 Silent p.L190L 0.30 TCGA-EB-A4IS-01 16 30974848 30974848 C T SETD1A Silent p.F204F 0.33 TCGA-EB-A4IS-01 16 3454589 3454589 C G ZNF174 Missense_Mutation p.P189R 0.17 tolerated(0.06) benign(0.117) TCGA-EB-A4IS-01 16 3454590 3454590 C T ZNF174 Silent p.P189P 0.17 TCGA-EB-A4IS-01 16 50813875 50813875 G A CYLD Missense_Mutation p.E480K 0.29 deleterious(0.04) benign(0.03) TCGA-EB-A4IS-01 16 53476659 53476659 G A RBL2 Missense_Mutation p.R154K 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 16 53686783 53686783 G A RPGRIP1L Silent p.L606L 0.20 TCGA-EB-A4IS-01 16 56598995 56598995 C T MT4 5'UTR 0.22 TCGA-EB-A4IS-01 16 61687550 61687550 C T CDH8 Missense_Mutation p.E788K 0.30 deleterious(0.04) probably_damaging(0.993) TCGA-EB-A4IS-01 16 624599 624599 C T PIGQ Silent p.L175L 0.36 TCGA-EB-A4IS-01 16 66946460 66946460 C T CDH16 Missense_Mutation p.E436K 0.26 tolerated(0.14) benign(0.166) TCGA-EB-A4IS-01 16 70534965 70534965 G A COG4 Missense_Mutation p.T364I 0.20 deleterious(0) possibly_damaging(0.835) TCGA-EB-A4IS-01 16 70557415 70557415 G A COG4 Missense_Mutation p.P11L 0.20 deleterious_low_confidence(0.03) benign(0.002) TCGA-EB-A4IS-01 16 70557416 70557416 G A COG4 Missense_Mutation p.P11S 0.20 tolerated_low_confidence(0.25) benign(0.002) TCGA-EB-A4IS-01 16 71663315 71663315 A T MARVELD3 Silent p.G171G 0.22 TCGA-EB-A4IS-01 16 71663316 71663316 C T MARVELD3 Nonsense_Mutation p.R172* 0.22 TCGA-EB-A4IS-01 16 75563587 75563587 G A CHST5 Silent p.S232S 0.28 TCGA-EB-A4IS-01 16 77398203 77398203 G A ADAMTS18 Missense_Mutation p.S285L 0.13 deleterious(0.04) probably_damaging(0.964) TCGA-EB-A4IS-01 16 84270451 84270451 G T KCNG4 Missense_Mutation p.P214Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4IS-01 16 84270452 84270452 G A KCNG4 Missense_Mutation p.P214S 0.31 deleterious(0) probably_damaging(0.997) TCGA-EB-A4IS-01 16 88876198 88876198 G A APRT Silent p.L151L 0.10 TCGA-EB-A4IS-01 16 89704650 89704650 C T DPEP1 3'UTR 0.38 TCGA-EB-A4IS-01 17 10323480 10323480 G A MYH8 Missense_Mutation p.S22L 0.27 deleterious(0.01) possibly_damaging(0.739) TCGA-EB-A4IS-01 17 10348605 10348605 G A MYH4 Silent p.I1748I 0.24 TCGA-EB-A4IS-01 17 11513721 11513721 C T DNAH9 Missense_Mutation p.S208F 0.30 benign(0.002) TCGA-EB-A4IS-01 17 16049688 16049688 A C NCOR1 Splice_Site p.X361_splice 0.13 TCGA-EB-A4IS-01 17 18167550 18167550 C T MIEF2 Silent p.I290I 0.29 TCGA-EB-A4IS-01 17 2601589 2601589 G A CLUH Missense_Mutation p.T483M 0.39 deleterious(0.03) probably_damaging(0.978) TCGA-EB-A4IS-01 17 26800805 26800805 G A SLC13A2 Silent p.L25L 0.16 TCGA-EB-A4IS-01 17 27010017 27010017 G A SUPT6H Silent p.Q595Q 0.23 TCGA-EB-A4IS-01 17 29553544 29553544 C T NF1 Missense_Mutation p.P698L 0.24 tolerated(0.34) probably_damaging(0.991) TCGA-EB-A4IS-01 17 33769300 33769300 G C SLFN13 Missense_Mutation p.P402A 0.31 deleterious(0.05) benign(0.017) TCGA-EB-A4IS-01 17 34261727 34261727 G A LYZL6 3'UTR 0.37 TCGA-EB-A4IS-01 17 34862940 34862940 G A MYO19 Silent p.L502L 0.18 TCGA-EB-A4IS-01 17 39038877 39038877 C T KRT20 Silent p.R140R 0.17 TCGA-EB-A4IS-01 17 39596955 39596955 G A KRT38 Silent p.C73C 0.23 TCGA-EB-A4IS-01 17 39596993 39596993 G A KRT38 Missense_Mutation p.P61S 0.14 tolerated(0.23) benign(0.098) TCGA-EB-A4IS-01 17 41003741 41003741 C T AOC3 Silent p.I127I 0.21 TCGA-EB-A4IS-01 17 47921434 47921434 C T TAC4 Missense_Mutation p.R70Q 0.14 tolerated(0.35) benign(0.437) TCGA-EB-A4IS-01 17 48655766 48655766 G A CACNA1G Silent p.R714R 0.30 TCGA-EB-A4IS-01 17 5085329 5085329 G C ZNF594 Silent p.T741T 0.19 TCGA-EB-A4IS-01 17 5463050 5463050 C T NLRP1 Silent p.L322L 0.25 TCGA-EB-A4IS-01 17 60005217 60005217 G A INTS2 Intron 0.07 TCGA-EB-A4IS-01 17 60351222 60351222 T C TBC1D3P2 RNA 0.23 TCGA-EB-A4IS-01 17 61623078 61623078 G A KCNH6 Missense_Mutation p.E934K 0.17 tolerated_low_confidence(0.18) benign(0.005) TCGA-EB-A4IS-01 17 61958248 61958248 C T GH2 Missense_Mutation p.E114K 0.13 tolerated(0.24) probably_damaging(0.995) TCGA-EB-A4IS-01 17 62781357 62781357 G A hsa-mir-6080 5'Flank 0.16 TCGA-EB-A4IS-01 17 6329165 6329165 G A AIPL1 Intron 0.37 TCGA-EB-A4IS-01 17 6663903 6663903 A G XAF1 Missense_Mutation p.Q135R 0.24 tolerated(0.08) possibly_damaging(0.615) TCGA-EB-A4IS-01 17 67249754 67249754 G A ABCA5 Missense_Mutation p.P1459S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 17 7195347 7195347 G A YBX2 Nonsense_Mutation p.Q123* 0.28 TCGA-EB-A4IS-01 17 7228266 7228266 C T NEURL4 Silent p.L555L 0.20 TCGA-EB-A4IS-01 17 74097455 74097455 G A EXOC7 Missense_Mutation p.P105L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 17 74732963 74732963 G A SRSF2 Missense_Mutation p.R94C 0.27 tolerated(0.05) possibly_damaging(0.698) TCGA-EB-A4IS-01 17 74771116 74771116 T G MFSD11 Silent p.R304R 0.31 TCGA-EB-A4IS-01 17 7722072 7722072 G A DNAH2 Missense_Mutation p.E3550K 0.23 probably_damaging(0.986) TCGA-EB-A4IS-01 17 79094702 79094702 C T AATK Missense_Mutation p.E1012K 0.44 tolerated(0.22) benign(0.006) TCGA-EB-A4IS-01 17 79419746 79419746 C T RP11-1055B8.7 Intron 0.28 TCGA-EB-A4IS-01 17 81042776 81042776 G A METRNL Intron 0.27 TCGA-EB-A4IS-01 17 9632391 9632391 C T USP43 3'UTR 0.16 TCGA-EB-A4IS-01 18 19345796 19345796 G A MIB1 Nonsense_Mutation p.W98* 0.27 TCGA-EB-A4IS-01 18 19996371 19996371 T C CTAGE1 Silent p.E468E 0.26 TCGA-EB-A4IS-01 18 21125066 21125066 G A NPC1 Missense_Mutation p.S602F 0.20 deleterious(0.05) benign(0.022) TCGA-EB-A4IS-01 18 21328004 21328004 C T LAMA3 Missense_Mutation p.S182L 0.15 benign(0.004) TCGA-EB-A4IS-01 18 25572674 25572674 C T CDH2 Missense_Mutation p.R430Q 0.23 tolerated(0.4) benign(0.152) TCGA-EB-A4IS-01 18 28576762 28576762 C T DSC3 Missense_Mutation p.G830S 0.23 deleterious(0.02) benign(0.43) TCGA-EB-A4IS-01 18 28598708 28598708 C T DSC3 Missense_Mutation p.G334E 0.24 deleterious(0) probably_damaging(0.989) TCGA-EB-A4IS-01 18 28714649 28714649 C T DSC1 Missense_Mutation p.E588K 0.50 tolerated(1) benign(0) TCGA-EB-A4IS-01 18 29340365 29340365 G A SLC25A52 Missense_Mutation p.P97L 0.27 deleterious(0.02) benign(0.403) TCGA-EB-A4IS-01 18 31324832 31324832 G A ASXL3 Missense_Mutation p.E1674K 0.38 benign(0.185) TCGA-EB-A4IS-01 18 43216976 43216976 G A SLC14A2 Silent p.L224L 0.24 TCGA-EB-A4IS-01 18 43479502 43479502 A G EPG5 Missense_Mutation p.V1559A 0.26 deleterious(0.03) probably_damaging(0.932) TCGA-EB-A4IS-01 18 44268882 44268882 C T ST8SIA5 Silent p.K104K 0.14 TCGA-EB-A4IS-01 18 44268883 44268883 C T ST8SIA5 Splice_Site p.X104_splice 0.14 TCGA-EB-A4IS-01 18 44585982 44585982 G A KATNAL2 Missense_Mutation p.R97K 0.26 tolerated(0.9) benign(0.001) TCGA-EB-A4IS-01 18 52265336 52265336 C T DYNAP Missense_Mutation p.S198F 0.18 deleterious_low_confidence(0) unknown(0) TCGA-EB-A4IS-01 18 52942858 52942858 C T TCF4 Missense_Mutation p.E363K 0.22 tolerated(0.05) benign(0.199) TCGA-EB-A4IS-01 18 60986008 60986008 G A BCL2 5'UTR 0.18 TCGA-EB-A4IS-01 18 60986009 60986009 T A BCL2 5'UTR 0.19 TCGA-EB-A4IS-01 18 6264003 6264003 C T L3MBTL4 Nonsense_Mutation p.W54* 0.07 TCGA-EB-A4IS-01 18 72343410 72343410 G T ZNF407 Silent p.L145L 0.28 TCGA-EB-A4IS-01 18 76753570 76753570 G A SALL3 Missense_Mutation p.G527R 0.33 deleterious(0) probably_damaging(0.964) TCGA-EB-A4IS-01 19 10224938 10224938 C T PPAN-P2RY11 Missense_Mutation p.P637S 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EB-A4IS-01 19 10398498 10398498 C T ICAM4 Missense_Mutation p.H202Y 0.19 deleterious_low_confidence(0) benign(0.152) TCGA-EB-A4IS-01 19 11304351 11304351 G A KANK2 Silent p.L135L 0.28 TCGA-EB-A4IS-01 19 11892470 11892470 G A ZNF441 Missense_Mutation p.G611R 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A4IS-01 19 12767424 12767424 G A MAN2B1 Silent p.F535F 0.11 TCGA-EB-A4IS-01 19 15536360 15536360 G A WIZ Missense_Mutation p.A434V 0.13 tolerated(0.08) possibly_damaging(0.855) TCGA-EB-A4IS-01 19 15839057 15839057 C T OR10H2 Silent p.V68V 0.18 TCGA-EB-A4IS-01 19 16799018 16799018 C T TMEM38A Missense_Mutation p.P246S 0.22 tolerated(0.48) benign(0.142) TCGA-EB-A4IS-01 19 17654374 17654374 C T FAM129C Silent p.I527I 0.09 TCGA-EB-A4IS-01 19 1785615 1785615 G A ATP8B3 Silent p.A1082A 0.17 TCGA-EB-A4IS-01 19 1785616 1785616 G A ATP8B3 Missense_Mutation p.A1082V 0.15 deleterious(0.01) possibly_damaging(0.715) TCGA-EB-A4IS-01 19 1828138 1828138 G A REXO1 Missense_Mutation p.P217L 0.16 tolerated(0.11) benign(0.046) TCGA-EB-A4IS-01 19 18376911 18376911 G A KIAA1683 Missense_Mutation p.S480L 0.26 tolerated(0.33) benign(0.366) TCGA-EB-A4IS-01 19 21240381 21240381 C T ZNF430 Missense_Mutation p.H423Y 0.21 deleterious(0.02) probably_damaging(1) TCGA-EB-A4IS-01 19 22940532 22940532 G A ZNF99 Missense_Mutation p.H727Y 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-EB-A4IS-01 19 30935695 30935695 C T ZNF536 Missense_Mutation p.P409L 0.27 tolerated(0.57) benign(0.092) TCGA-EB-A4IS-01 19 33991859 33991859 G A PEPD Silent p.V126V 0.31 TCGA-EB-A4IS-01 19 35996873 35996873 G A DMKN Missense_Mutation p.P352S 0.19 tolerated(0.31) unknown(0) TCGA-EB-A4IS-01 19 3759811 3759811 G A APBA3 Missense_Mutation p.S151F 0.26 deleterious(0.04) benign(0.045) TCGA-EB-A4IS-01 19 40398306 40398306 C T FCGBP Missense_Mutation p.D2221N 0.19 possibly_damaging(0.831) TCGA-EB-A4IS-01 19 40885670 40885670 C T HIPK4 Missense_Mutation p.D559N 0.25 tolerated_low_confidence(0.12) benign(0.001) TCGA-EB-A4IS-01 19 41630625 41630625 C T CYP2F1 Silent p.A322A 0.23 TCGA-EB-A4IS-01 19 41919965 41919965 C T BCKDHA Silent p.S129S 0.19 TCGA-EB-A4IS-01 19 4207943 4207943 C T ANKRD24 Silent p.A270A 0.45 TCGA-EB-A4IS-01 19 44891161 44891161 G A ZNF285 Nonsense_Mutation p.Q416* 0.33 TCGA-EB-A4IS-01 19 45175893 45175893 C T CEACAM19 Silent p.L27L 0.23 TCGA-EB-A4IS-01 19 46347328 46347328 C T SYMPK Missense_Mutation p.M269I 0.22 tolerated(0.24) benign(0.007) TCGA-EB-A4IS-01 19 47230774 47230774 C T STRN4 Missense_Mutation p.G402R 0.11 deleterious(0.03) probably_damaging(1) TCGA-EB-A4IS-01 19 47870327 47870327 C T DHX34 Silent p.L561L 0.28 TCGA-EB-A4IS-01 19 47870341 47870341 C T DHX34 Missense_Mutation p.A566V 0.19 deleterious(0) probably_damaging(0.966) TCGA-EB-A4IS-01 19 47870342 47870342 C T DHX34 Silent p.A566A 0.20 TCGA-EB-A4IS-01 19 48250288 48250288 G A GLTSCR2 Missense_Mutation p.G97R 0.33 tolerated(0.31) benign(0.02) TCGA-EB-A4IS-01 19 48382302 48382302 C T SULT2A1 Silent p.E186E 0.18 TCGA-EB-A4IS-01 19 49224060 49224060 G A RASIP1 Missense_Mutation p.P963S 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EB-A4IS-01 19 49714803 49714803 C T TRPM4 3'UTR 0.25 TCGA-EB-A4IS-01 19 50148380 50148380 G T SCAF1 Missense_Mutation p.A33S 0.12 unknown(0) TCGA-EB-A4IS-01 19 50360315 50360315 C T PTOV1 Silent p.F214F 0.21 TCGA-EB-A4IS-01 19 50411602 50411602 A T NUP62 Missense_Mutation p.I488N 0.18 deleterious(0) probably_damaging(0.91) TCGA-EB-A4IS-01 19 52520388 52520388 G A ZNF614 Missense_Mutation p.P155S 0.31 tolerated(1) benign(0.004) TCGA-EB-A4IS-01 19 52869134 52869134 C T ZNF610 Missense_Mutation p.S168F 0.21 tolerated(0.72) benign(0.001) TCGA-EB-A4IS-01 19 53432307 53432307 A G ZNF321P Missense_Mutation p.I184T 0.19 tolerated(0.2) benign(0.073) TCGA-EB-A4IS-01 19 53856783 53856783 T G ZNF845 Missense_Mutation p.F952C 0.48 deleterious(0) probably_damaging(0.936) TCGA-EB-A4IS-01 19 54312879 54312879 C T NLRP12 Silent p.A678A 0.09 TCGA-EB-A4IS-01 19 54649535 54649535 C T CNOT3 Silent p.L229L 0.33 TCGA-EB-A4IS-01 19 55365471 55365471 C T KIR3DL2 Missense_Mutation p.P209S 0.28 tolerated(0.05) benign(0.017) TCGA-EB-A4IS-01 19 55494764 55494764 C T NLRP2 Silent p.A566A 0.38 TCGA-EB-A4IS-01 19 56041171 56041171 C T SBK2 Missense_Mutation p.G326R 0.25 tolerated(0.07) probably_damaging(1) TCGA-EB-A4IS-01 19 56515201 56515201 C T NLRP5 Missense_Mutation p.S61F 0.20 deleterious(0) probably_damaging(0.99) TCGA-EB-A4IS-01 19 571510 571510 C T BSG 5'Flank 0.24 TCGA-EB-A4IS-01 19 57670630 57670630 C T DUXA Missense_Mutation p.R66Q 0.23 tolerated(0.12) benign(0.089) TCGA-EB-A4IS-01 19 58564905 58564905 C T ZSCAN1 Missense_Mutation p.P238L 0.19 tolerated(0.22) benign(0.002) TCGA-EB-A4IS-01 19 58564906 58564906 C T ZSCAN1 Silent p.P238P 0.18 TCGA-EB-A4IS-01 19 6147644 6147644 G A ACSBG2 Silent p.Q85Q 0.19 TCGA-EB-A4IS-01 19 6147645 6147645 T A ACSBG2 Missense_Mutation p.Y86N 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 19 6227094 6227094 C T MLLT1 Missense_Mutation p.G147E 0.19 deleterious(0.03) benign(0.186) TCGA-EB-A4IS-01 19 6227095 6227095 C T MLLT1 Missense_Mutation p.G147R 0.18 deleterious(0) possibly_damaging(0.885) TCGA-EB-A4IS-01 19 6713197 6713197 C T C3 Intron 0.33 TCGA-EB-A4IS-01 19 7806027 7806027 C T CD209 3'UTR 0.29 TCGA-EB-A4IS-01 19 853268 853268 C T ELANE Silent p.V77V 0.29 TCGA-EB-A4IS-01 19 9065994 9065994 G A MUC16 Missense_Mutation p.S7151L 0.24 unknown(0) TCGA-EB-A4IS-01 19 9066578 9066578 G A MUC16 Silent p.T6956T 0.24 TCGA-EB-A4IS-01 19 9083882 9083882 G A MUC16 Missense_Mutation p.P2645S 0.20 unknown(0) TCGA-EB-A4IS-01 19 9237290 9237290 C T OR7G3 Missense_Mutation p.G113R 0.32 deleterious(0.02) benign(0.445) TCGA-EB-A4IS-01 19 9272036 9272036 C T ZNF317 Missense_Mutation p.S572F 0.25 tolerated(0.31) probably_damaging(0.926) TCGA-EB-A4IS-01 1 100155067 100155067 C T PALMD Silent p.F417F 0.33 TCGA-EB-A4IS-01 1 104162178 104162178 C T AMY2A Silent p.V172V 0.13 TCGA-EB-A4IS-01 1 104202982 104202982 G A AMY1A Silent p.K293K 0.16 TCGA-EB-A4IS-01 1 10711033 10711033 C T CASZ1 Silent p.Q927Q 0.19 TCGA-EB-A4IS-01 1 110201639 110201639 C T GSTM4 Silent p.F158F 0.27 TCGA-EB-A4IS-01 1 111663232 111663232 G A DRAM2 Silent p.I141I 0.15 TCGA-EB-A4IS-01 1 11317043 11317043 G T MTOR Silent p.R151R 0.29 TCGA-EB-A4IS-01 1 118523903 118523903 T C SPAG17 Silent p.K1998K 0.33 TCGA-EB-A4IS-01 1 145115842 145115842 G T SEC22B RNA 0.06 TCGA-EB-A4IS-01 1 145416734 145416734 C T HFE2 Missense_Mutation p.S360F 0.17 deleterious(0) probably_damaging(0.987) TCGA-EB-A4IS-01 1 152129337 152129337 G A RPTN Nonsense_Mutation p.Q80* 0.10 TCGA-EB-A4IS-01 1 152188321 152188321 A G HRNR Silent p.S1928S 0.02 TCGA-EB-A4IS-01 1 153065972 153065972 C T SPRR2E 3'UTR 0.37 TCGA-EB-A4IS-01 1 153346314 153346314 G A S100A12 Missense_Mutation p.H90Y 0.37 deleterious(0.02) possibly_damaging(0.831) TCGA-EB-A4IS-01 1 157488500 157488500 C A FCRL5 Silent p.V911V 0.26 TCGA-EB-A4IS-01 1 15767060 15767060 C T CTRC Silent p.F68F 0.22 TCGA-EB-A4IS-01 1 158390374 158390374 G A OR10K2 Silent p.L95L 0.38 TCGA-EB-A4IS-01 1 158627317 158627317 C T SPTA1 Missense_Mutation p.E919K 0.07 deleterious(0) possibly_damaging(0.869) TCGA-EB-A4IS-01 1 158746540 158746540 C T OR6N2 Missense_Mutation p.E296K 0.26 deleterious(0.01) benign(0.049) TCGA-EB-A4IS-01 1 158908910 158908910 G A PYHIN1 Missense_Mutation p.R151K 0.21 tolerated(1) benign(0.026) TCGA-EB-A4IS-01 1 159505705 159505705 G A OR10J5 Silent p.F31F 0.14 TCGA-EB-A4IS-01 1 160260356 160260356 G A COPA Missense_Mutation p.P1190S 0.23 tolerated(0.14) benign(0.014) TCGA-EB-A4IS-01 1 161068482 161068482 G A KLHDC9 Missense_Mutation p.E53K 0.19 tolerated(0.3) benign(0.016) TCGA-EB-A4IS-01 1 16257381 16257381 A T SPEN Missense_Mutation p.K1549I 0.10 probably_damaging(0.997) TCGA-EB-A4IS-01 1 165218847 165218847 G A LMX1A Silent p.F98F 0.17 TCGA-EB-A4IS-01 1 168153290 168153290 G A TIPRL Silent p.V85V 0.12 TCGA-EB-A4IS-01 1 169842890 169842890 G A SCYL3 Silent p.L157L 0.35 TCGA-EB-A4IS-01 1 175086161 175086161 G A TNN Missense_Mutation p.D736N 0.30 deleterious(0) probably_damaging(0.981) TCGA-EB-A4IS-01 1 175365764 175365764 C T TNR Missense_Mutation p.E386K 0.17 tolerated(0.06) possibly_damaging(0.803) TCGA-EB-A4IS-01 1 18023862 18023862 C T ARHGEF10L Missense_Mutation p.P1276L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 1 180907803 180907803 C T KIAA1614 Silent p.S958S 0.09 TCGA-EB-A4IS-01 1 180907804 180907804 C T KIAA1614 Silent p.L959L 0.09 TCGA-EB-A4IS-01 1 181702080 181702080 C T CACNA1E Missense_Mutation p.P953L 0.23 tolerated(0.1) benign(0.001) TCGA-EB-A4IS-01 1 183515287 183515287 C T SMG7 Missense_Mutation p.P807S 0.38 deleterious_low_confidence(0.02) benign(0.242) TCGA-EB-A4IS-01 1 185878583 185878583 G A HMCN1 Missense_Mutation p.E246K 0.20 possibly_damaging(0.899) TCGA-EB-A4IS-01 1 186043930 186043930 A C HMCN1 Missense_Mutation p.K2733Q 0.38 benign(0.36) TCGA-EB-A4IS-01 1 186375275 186375275 C T C1orf27 Missense_Mutation p.T354I 0.32 deleterious(0.04) benign(0.091) TCGA-EB-A4IS-01 1 18809873 18809873 C T KLHDC7A 3'UTR 0.15 TCGA-EB-A4IS-01 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.22 tolerated(0.27) possibly_damaging(0.788) TCGA-EB-A4IS-01 1 196973942 196973942 T G CFHR5 Missense_Mutation p.N494K 0.29 tolerated(0.53) probably_damaging(0.999) TCGA-EB-A4IS-01 1 197030924 197030924 C T F13B Silent p.R147R 0.37 TCGA-EB-A4IS-01 1 198672472 198672472 G A PTPRC Missense_Mutation p.G210E 0.21 tolerated(0.79) benign(0.079) TCGA-EB-A4IS-01 1 202457679 202457679 A C PPP1R12B Silent p.V623V 0.27 TCGA-EB-A4IS-01 1 202911260 202911260 C A ADIPOR1 Missense_Mutation p.G298C 0.09 deleterious(0) possibly_damaging(0.696) TCGA-EB-A4IS-01 1 204511992 204511992 C T MDM4 Silent p.L198L 0.41 TCGA-EB-A4IS-01 1 205027169 205027169 G A CNTN2 Missense_Mutation p.R64Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4IS-01 1 205027170 205027170 G A CNTN2 Silent p.R64R 0.24 TCGA-EB-A4IS-01 1 209961817 209961817 G A IRF6 Missense_Mutation p.P451L 0.29 deleterious(0.02) benign(0.001) TCGA-EB-A4IS-01 1 21231412 21231412 G A EIF4G3 Silent p.T522T 0.11 TCGA-EB-A4IS-01 1 222919965 222919965 C T FAM177B Silent p.I26I 0.18 TCGA-EB-A4IS-01 1 226180625 226180625 C T SDE2 Missense_Mutation p.G106E 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 1 226411643 226411643 C T MIXL1 Silent p.R87R 0.12 TCGA-EB-A4IS-01 1 226829796 226829796 G A ITPKB Silent p.A759A 0.34 TCGA-EB-A4IS-01 1 228432259 228432259 C T OBSCN Silent p.H1248H 0.19 TCGA-EB-A4IS-01 1 228432260 228432260 C T OBSCN Silent p.L1249L 0.20 TCGA-EB-A4IS-01 1 237729900 237729900 A T RYR2 Missense_Mutation p.E1083V 0.22 probably_damaging(0.909) TCGA-EB-A4IS-01 1 237791261 237791261 G A RYR2 Silent p.T2107T 0.27 TCGA-EB-A4IS-01 1 238050087 238050087 G A ZP4 Missense_Mutation p.R275C 0.40 deleterious(0.04) probably_damaging(0.93) TCGA-EB-A4IS-01 1 245848836 245848836 G A KIF26B Missense_Mutation p.D851N 0.16 deleterious(0.02) unknown(0) TCGA-EB-A4IS-01 1 247150761 247150761 G A ZNF695 Silent p.F352F 0.22 TCGA-EB-A4IS-01 1 248023993 248023993 G A TRIM58 Silent p.G165G 0.17 TCGA-EB-A4IS-01 1 248487278 248487278 A C OR2M7 Missense_Mutation p.V198G 0.29 tolerated(0.1) benign(0.191) TCGA-EB-A4IS-01 1 26507084 26507084 G A CNKSR1 Missense_Mutation p.E65K 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 1 26688387 26688387 G C ZNF683 Missense_Mutation p.H424D 0.27 deleterious(0) probably_damaging(0.951) TCGA-EB-A4IS-01 1 27426990 27426990 A G SLC9A1 Silent p.A752A 0.28 TCGA-EB-A4IS-01 1 27736695 27736695 G A WASF2 Missense_Mutation p.P277L 0.12 tolerated(0.17) unknown(0) TCGA-EB-A4IS-01 1 28527726 28527726 G A DNAJC8 3'UTR 0.29 TCGA-EB-A4IS-01 1 33248017 33248017 G A YARS Missense_Mutation p.P344S 0.07 tolerated(0.06) benign(0.023) TCGA-EB-A4IS-01 1 33402877 33402877 C T RNF19B Intron 0.13 TCGA-EB-A4IS-01 1 33799745 33799745 G A PHC2 Silent p.I568I 0.11 TCGA-EB-A4IS-01 1 36479616 36479616 C T AGO3 Missense_Mutation p.A458V 0.14 tolerated(0.08) benign(0.019) TCGA-EB-A4IS-01 1 40307398 40307398 G A TRIT1 3'UTR 0.13 TCGA-EB-A4IS-01 1 40307399 40307399 G A TRIT1 3'UTR 0.13 TCGA-EB-A4IS-01 1 41236337 41236337 C T NFYC Intron 0.20 TCGA-EB-A4IS-01 1 43855557 43855557 C T SZT2 5'Flank 0.38 TCGA-EB-A4IS-01 1 43904693 43904693 C T SZT2 Silent p.L2184L 0.29 TCGA-EB-A4IS-01 1 45292945 45292945 C T PTCH2 Missense_Mutation p.G803E 0.36 deleterious(0) probably_damaging(0.994) TCGA-EB-A4IS-01 1 54060312 54060312 G A GLIS1 Silent p.S88S 0.28 TCGA-EB-A4IS-01 1 6253009 6253009 C A RPL22 Nonsense_Mutation p.E75* 0.37 TCGA-EB-A4IS-01 1 71318529 71318529 C T PTGER3 Missense_Mutation p.G373E 0.24 deleterious_low_confidence(0) benign(0.044) TCGA-EB-A4IS-01 1 7837252 7837252 G A VAMP3 Silent p.K35K 0.20 TCGA-EB-A4IS-01 1 7980927 7980927 G A TNFRSF9 Missense_Mutation p.P246S 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 1 84668480 84668480 T A PRKACB Missense_Mutation p.S300T 0.25 tolerated(0.1) benign(0.003) TCGA-EB-A4IS-01 1 92446921 92446921 G A BRDT Missense_Mutation p.R616K 0.11 tolerated(1) benign(0.001) TCGA-EB-A4IS-01 1 93826215 93826215 C T DR1 3'UTR 0.45 TCGA-EB-A4IS-01 1 95710055 95710055 A G RWDD3 Missense_Mutation p.E125G 0.11 tolerated(0.18) benign(0.011) TCGA-EB-A4IS-01 20 1145691 1145691 C T PSMF1 Silent p.L261L 0.08 TCGA-EB-A4IS-01 20 1286517 1286517 C T SNPH Missense_Mutation p.P435L 0.62 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 20 15210680 15210680 C T MACROD2 Silent p.L171L 0.23 TCGA-EB-A4IS-01 20 23065708 23065708 C T CD93 Silent p.E374E 0.21 TCGA-EB-A4IS-01 20 2638719 2638719 C T NOP56 Missense_Mutation p.L522F 0.31 tolerated_low_confidence(0.05) benign(0.012) TCGA-EB-A4IS-01 20 3653274 3653274 C T ADAM33 Splice_Site p.X438_splice 0.16 TCGA-EB-A4IS-01 20 36641225 36641225 G A TTI1 Missense_Mutation p.L332F 0.21 tolerated(0.06) probably_damaging(0.949) TCGA-EB-A4IS-01 20 37464744 37464744 G A PPP1R16B Missense_Mutation p.G59D 0.30 tolerated(0.3) benign(0.004) TCGA-EB-A4IS-01 20 40042035 40042035 G A CHD6 Missense_Mutation p.P2354S 0.20 tolerated(0.22) probably_damaging(0.999) TCGA-EB-A4IS-01 20 42788274 42788274 C T JPH2 Missense_Mutation p.E385K 0.36 deleterious(0) possibly_damaging(0.793) TCGA-EB-A4IS-01 20 43752462 43752462 C T WFDC12 3'UTR 0.21 TCGA-EB-A4IS-01 20 43836757 43836757 C T SEMG1 Silent p.L273L 0.37 TCGA-EB-A4IS-01 20 44472223 44472223 G A ACOT8 Missense_Mutation p.H262Y 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 20 46305285 46305285 G A SULF2 Silent p.L445L 0.38 TCGA-EB-A4IS-01 20 55949909 55949909 C T RAE1 Intron 0.24 TCGA-EB-A4IS-01 20 57599791 57599791 G C TUBB1 Missense_Mutation p.E437Q 0.08 deleterious_low_confidence(0.02) benign(0.009) TCGA-EB-A4IS-01 20 62193515 62193515 G A HELZ2 Missense_Mutation p.P2147S 0.35 deleterious(0) possibly_damaging(0.717) TCGA-EB-A4IS-01 20 62193516 62193516 G A HELZ2 Silent p.I2146I 0.35 TCGA-EB-A4IS-01 20 62370125 62370125 T G LIME1 Missense_Mutation p.Y254D 0.24 deleterious(0.02) probably_damaging(0.955) TCGA-EB-A4IS-01 20 62595446 62595446 G A ZNF512B Silent p.A486A 0.31 TCGA-EB-A4IS-01 21 10862636 10862636 G A IGHV1OR21-1 Nonsense_Mutation p.W5* 0.08 TCGA-EB-A4IS-01 21 10921986 10921986 C T TPTE Missense_Mutation p.G346E 0.21 deleterious(0) probably_damaging(0.994) TCGA-EB-A4IS-01 21 27372498 27372498 C G APP Splice_Site p.X289_splice 0.09 TCGA-EB-A4IS-01 21 34003978 34003978 G A SYNJ1 Missense_Mutation p.P1389L 0.26 tolerated_low_confidence(0.27) benign(0.007) TCGA-EB-A4IS-01 21 34003979 34003979 G A SYNJ1 Missense_Mutation p.P1389S 0.28 tolerated_low_confidence(0.8) benign(0.012) TCGA-EB-A4IS-01 21 39086790 39086790 C T KCNJ6 Missense_Mutation p.V224I 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-EB-A4IS-01 21 43274688 43274688 G A PRDM15 Silent p.G541G 0.15 TCGA-EB-A4IS-01 21 47664722 47664722 C T MCM3AP Silent p.G1679G 0.31 TCGA-EB-A4IS-01 21 47686994 47686994 G A MCM3AP Silent p.T897T 0.61 TCGA-EB-A4IS-01 22 26166122 26166122 C T MYO18B Nonsense_Mutation p.Q520* 0.47 TCGA-EB-A4IS-01 22 26849097 26849097 G A HPS4 3'UTR 0.56 TCGA-EB-A4IS-01 22 30857429 30857429 C T SEC14L3 Missense_Mutation p.G317R 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 22 32589092 32589092 C A RFPL2 Missense_Mutation p.C118F 0.41 tolerated(0.54) possibly_damaging(0.723) TCGA-EB-A4IS-01 22 38374047 38374047 G A SOX10 Missense_Mutation p.P175L 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A4IS-01 22 42606724 42606724 G A TCF20 Missense_Mutation p.P1530S 0.37 probably_damaging(0.96) TCGA-EB-A4IS-01 22 46657456 46657456 C T PKDREJ Silent p.R588R 0.56 TCGA-EB-A4IS-01 22 50727260 50727260 G A PLXNB2 Missense_Mutation p.S431F 0.44 deleterious(0.01) possibly_damaging(0.863) TCGA-EB-A4IS-01 2 101009849 101009849 G A CHST10 Missense_Mutation p.P310L 0.13 tolerated(0.11) benign(0.02) TCGA-EB-A4IS-01 2 107459978 107459978 G A ST6GAL2 Silent p.S152S 0.09 TCGA-EB-A4IS-01 2 108626906 108626906 C T SLC5A7 Silent p.F444F 0.07 TCGA-EB-A4IS-01 2 113420624 113420624 G T SLC20A1 3'UTR 0.28 TCGA-EB-A4IS-01 2 125660611 125660611 G A CNTNAP5 Missense_Mutation p.E1196K 0.29 deleterious(0.02) possibly_damaging(0.606) TCGA-EB-A4IS-01 2 128867249 128867249 T G UGGT1 Missense_Mutation p.F150L 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-EB-A4IS-01 2 136569980 136569980 G A LCT Missense_Mutation p.L752F 0.29 deleterious(0) possibly_damaging(0.889) TCGA-EB-A4IS-01 2 136575445 136575445 G A LCT Silent p.S391S 0.30 TCGA-EB-A4IS-01 2 137928454 137928454 G A THSD7B Missense_Mutation p.G557R 0.34 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A4IS-01 2 138169367 138169367 G A THSD7B Missense_Mutation p.G962S 0.32 deleterious(0) probably_damaging(0.931) TCGA-EB-A4IS-01 2 138169368 138169368 G A THSD7B Missense_Mutation p.G962D 0.33 deleterious(0) probably_damaging(0.969) TCGA-EB-A4IS-01 2 141607745 141607745 C T LRP1B Nonsense_Mutation p.W1622* 0.12 TCGA-EB-A4IS-01 2 152382559 152382559 C T NEB Silent p.K7358K 0.19 TCGA-EB-A4IS-01 2 152419175 152419175 C T NEB Missense_Mutation p.E6281K 0.27 possibly_damaging(0.78) TCGA-EB-A4IS-01 2 158412723 158412723 G A ACVR1C Silent p.S142S 0.33 TCGA-EB-A4IS-01 2 165551675 165551675 C T COBLL1 Missense_Mutation p.E781K 0.29 deleterious(0) possibly_damaging(0.906) TCGA-EB-A4IS-01 2 166003454 166003454 G A SCN3A Missense_Mutation p.S489L 0.13 deleterious(0.02) probably_damaging(0.943) TCGA-EB-A4IS-01 2 16769383 16769383 C T FAM49A Missense_Mutation p.G2E 0.32 deleterious(0) probably_damaging(0.947) TCGA-EB-A4IS-01 2 179398154 179398154 C T TTN Nonsense_Mutation p.W34396* 0.28 TCGA-EB-A4IS-01 2 179427855 179427855 C T TTN Silent p.E27668E 0.24 TCGA-EB-A4IS-01 2 179433511 179433511 C T TTN Missense_Mutation p.R25783Q 0.15 TCGA-EB-A4IS-01 2 179449483 179449483 C T TTN Missense_Mutation p.E21629K 0.14 TCGA-EB-A4IS-01 2 179538385 179538385 T C TTN Silent p.K11587K 0.21 TCGA-EB-A4IS-01 2 179598099 179598099 G A TTN Silent p.Y5307Y 0.15 TCGA-EB-A4IS-01 2 189898825 189898825 C T COL5A2 Missense_Mutation p.V1491I 0.08 unknown(0) TCGA-EB-A4IS-01 2 197002303 197002303 G A STK17B Silent p.S329S 0.09 TCGA-EB-A4IS-01 2 198508932 198508932 G A RFTN2 Silent p.L130L 0.24 TCGA-EB-A4IS-01 2 208841442 208841442 G A PLEKHM3 Silent p.S493S 0.39 TCGA-EB-A4IS-01 2 21228752 21228752 C T APOB Missense_Mutation p.G3663E 0.16 probably_damaging(0.978) TCGA-EB-A4IS-01 2 21239448 21239448 T C APOB Silent p.Q1065Q 0.15 TCGA-EB-A4IS-01 2 212530049 212530049 C A ERBB4 Missense_Mutation p.G624W 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 2 212989568 212989568 G T ERBB4 Missense_Mutation p.A48D 0.14 deleterious(0.02) benign(0.019) TCGA-EB-A4IS-01 2 218954061 218954061 G A RUFY4 Missense_Mutation p.R550Q 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-EB-A4IS-01 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.12 deleterious(0) probably_damaging(0.954) TCGA-EB-A4IS-01 2 222301209 222301209 G A EPHA4 Silent p.I752I 0.20 TCGA-EB-A4IS-01 2 228883076 228883076 C T SPHKAP Missense_Mutation p.E832K 0.12 tolerated(0.73) benign(0.05) TCGA-EB-A4IS-01 2 233349916 233349916 C T ECEL1 Missense_Mutation p.S283N 0.24 tolerated(0.17) probably_damaging(0.998) TCGA-EB-A4IS-01 2 241685279 241685279 G A KIF1A Silent p.L1084L 0.12 TCGA-EB-A4IS-01 2 24300518 24300518 G T TP53I3 Silent p.I310I 0.18 TCGA-EB-A4IS-01 2 25973054 25973054 G A ASXL2 Silent p.F457F 0.28 TCGA-EB-A4IS-01 2 27282176 27282176 C T AGBL5 Missense_Mutation p.P665S 0.10 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-EB-A4IS-01 2 27373088 27373088 C G TCF23 Missense_Mutation p.P107R 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 2 32476005 32476005 G A NLRC4 Nonsense_Mutation p.R310* 0.30 TCGA-EB-A4IS-01 2 32476006 32476006 G A NLRC4 Silent p.I309I 0.30 TCGA-EB-A4IS-01 2 43984263 43984263 G A PLEKHH2 Silent p.E1267E 0.14 TCGA-EB-A4IS-01 2 44549970 44549970 C T PREPL Silent p.T640T 0.26 TCGA-EB-A4IS-01 2 50699436 50699436 C T NRXN1 Missense_Mutation p.G1122R 0.23 deleterious(0) possibly_damaging(0.905) TCGA-EB-A4IS-01 2 54880844 54880844 C T SPTBN1 Silent p.A1892A 0.12 TCGA-EB-A4IS-01 2 64327545 64327545 G A PELI1 Missense_Mutation p.T97I 0.26 deleterious(0) possibly_damaging(0.789) TCGA-EB-A4IS-01 2 68274371 68274371 G A C1D Silent p.S24S 0.18 TCGA-EB-A4IS-01 2 69045040 69045040 A C ARHGAP25 Missense_Mutation p.N306T 0.14 deleterious(0) probably_damaging(0.984) TCGA-EB-A4IS-01 2 74362670 74362670 G A BOLA3 3'UTR 0.09 TCGA-EB-A4IS-01 2 84800642 84800642 G A DNAH6 Missense_Mutation p.E619K 0.12 deleterious(0.03) benign(0.168) TCGA-EB-A4IS-01 2 89339753 89339753 T C IGKV1-12 Missense_Mutation p.T107A 0.18 tolerated(0.07) benign(0.022) TCGA-EB-A4IS-01 3 108380723 108380723 G A DZIP3 Splice_Site p.X734_splice 0.25 TCGA-EB-A4IS-01 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 3 111958764 111958764 G A SLC9C1 Missense_Mutation p.L457F 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-EB-A4IS-01 3 111958765 111958765 G A SLC9C1 Silent p.A456A 0.21 TCGA-EB-A4IS-01 3 112299604 112299604 G A SLC35A5 Missense_Mutation p.E214K 0.09 tolerated(0.73) benign(0.099) TCGA-EB-A4IS-01 3 112300032 112300032 C T SLC35A5 Silent p.S356S 0.15 TCGA-EB-A4IS-01 3 114058043 114058043 G A ZBTB20 Nonsense_Mutation p.R679* 0.09 TCGA-EB-A4IS-01 3 121151191 121151191 A T POLQ Missense_Mutation p.I2578K 0.16 deleterious(0) probably_damaging(0.978) TCGA-EB-A4IS-01 3 121345544 121345544 C T FBXO40 Silent p.I639I 0.21 TCGA-EB-A4IS-01 3 128707645 128707645 C T KIAA1257 Missense_Mutation p.D127N 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-EB-A4IS-01 3 130717162 130717162 C T ATP2C1 Nonsense_Mutation p.R840* 0.21 TCGA-EB-A4IS-01 3 133336016 133336016 G A TOPBP1 Silent p.H1249H 0.19 TCGA-EB-A4IS-01 3 133485236 133485236 C T TF Missense_Mutation p.P482L 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 3 133485237 133485237 C T TF Silent p.P482P 0.26 TCGA-EB-A4IS-01 3 13383561 13383561 G A NUP210 Silent p.F1009F 0.12 TCGA-EB-A4IS-01 3 136573686 136573686 G A SLC35G2 Silent p.R128R 0.17 TCGA-EB-A4IS-01 3 141497056 141497056 G A GRK7 5'UTR 0.32 TCGA-EB-A4IS-01 3 141497057 141497057 G T GRK7 5'UTR 0.32 TCGA-EB-A4IS-01 3 1418728 1418728 G A CNTN6 Missense_Mutation p.G712E 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 3 142681053 142681053 T C PAQR9 Missense_Mutation p.K376E 0.14 tolerated_low_confidence(0.09) benign(0) TCGA-EB-A4IS-01 3 154042090 154042090 C T DHX36 Missense_Mutation p.G39D 0.13 tolerated(1) probably_damaging(0.931) TCGA-EB-A4IS-01 3 167414821 167414821 G A PDCD10 Missense_Mutation p.R82C 0.30 deleterious(0) probably_damaging(0.991) TCGA-EB-A4IS-01 3 184105217 184105217 C T CHRD Silent p.P801P 0.32 TCGA-EB-A4IS-01 3 189612120 189612120 T C TP63 Silent p.S624S 0.12 TCGA-EB-A4IS-01 3 194790815 194790815 C T XXYLT1 Missense_Mutation p.E271K 0.35 tolerated(0.24) benign(0.178) TCGA-EB-A4IS-01 3 195516131 195516131 G A MUC4 Missense_Mutation p.H774Y 0.18 unknown(0) TCGA-EB-A4IS-01 3 2928815 2928815 C T CNTN4 Missense_Mutation p.P283S 0.08 deleterious(0.01) possibly_damaging(0.75) TCGA-EB-A4IS-01 3 36873661 36873661 C T TRANK1 Nonsense_Mutation p.W2427* 0.13 TCGA-EB-A4IS-01 3 38138100 38138100 G A DLEC1 Missense_Mutation p.D738N 0.18 tolerated(0.28) benign(0.011) TCGA-EB-A4IS-01 3 38738864 38738864 C T SCN10A Missense_Mutation p.M1949I 0.06 tolerated_low_confidence(0.11) benign(0) TCGA-EB-A4IS-01 3 38798333 38798333 C T SCN10A Missense_Mutation p.M374I 0.10 tolerated(0.07) benign(0.123) TCGA-EB-A4IS-01 3 42264480 42264480 A T TRAK1 Nonsense_Mutation p.K705* 0.34 TCGA-EB-A4IS-01 3 42727451 42727451 C T KLHL40 Missense_Mutation p.P114L 0.16 deleterious(0) probably_damaging(0.925) TCGA-EB-A4IS-01 3 44611958 44611958 C T ZKSCAN7 Silent p.S452S 0.36 TCGA-EB-A4IS-01 3 47374755 47374755 C T KLHL18 Missense_Mutation p.L237F 0.10 deleterious(0.02) benign(0.29) TCGA-EB-A4IS-01 3 52263740 52263740 G A TLR9 Silent p.S134S 0.14 TCGA-EB-A4IS-01 3 52811620 52811620 G A ITIH1 5'UTR 0.15 TCGA-EB-A4IS-01 3 56657115 56657115 A G FAM208A 3'UTR 0.08 TCGA-EB-A4IS-01 3 57282366 57282366 C T APPL1 Missense_Mutation p.L284F 0.11 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 3 65342558 65342558 C T MAGI1 Missense_Mutation p.R1295Q 0.07 tolerated(0.12) benign(0.275) TCGA-EB-A4IS-01 3 78666819 78666819 C T ROBO1 Silent p.L1416L 0.10 TCGA-EB-A4IS-01 3 9711175 9711175 C T MTMR14 Nonsense_Mutation p.R185* 0.19 TCGA-EB-A4IS-01 4 10445280 10445280 G A ZNF518B Silent p.T891T 0.21 TCGA-EB-A4IS-01 4 114276687 114276687 G A ANK2 Missense_Mutation p.E2305K 0.15 benign(0.007) TCGA-EB-A4IS-01 4 121702361 121702361 C T PRDM5 Silent p.K460K 0.15 TCGA-EB-A4IS-01 4 122722487 122722487 C T EXOSC9 5'UTR 0.39 TCGA-EB-A4IS-01 4 122853753 122853753 G A TRPC3 Silent p.F220F 0.28 TCGA-EB-A4IS-01 4 126238178 126238178 C T FAT4 Silent p.S204S 0.30 TCGA-EB-A4IS-01 4 126370307 126370307 G A FAT4 Missense_Mutation p.M2712I 0.32 benign(0) TCGA-EB-A4IS-01 4 13616159 13616159 C A BOD1L1 Nonsense_Mutation p.E279* 0.31 TCGA-EB-A4IS-01 4 140810355 140810355 G A MAML3 Intron 0.16 TCGA-EB-A4IS-01 4 156135589 156135589 C T NPY2R Silent p.F166F 0.21 TCGA-EB-A4IS-01 4 159092156 159092156 G C FAM198B Silent p.T124T 0.19 TCGA-EB-A4IS-01 4 169143026 169143026 G A DDX60 Silent p.L1611L 0.12 TCGA-EB-A4IS-01 4 176622896 176622896 T A GPM6A Missense_Mutation p.K20N 0.16 deleterious(0) possibly_damaging(0.798) TCGA-EB-A4IS-01 4 1807634 1807634 G T FGFR3 Silent p.V603V 0.24 TCGA-EB-A4IS-01 4 183600831 183600831 G A TENM3 Missense_Mutation p.E447K 0.28 tolerated(0.28) possibly_damaging(0.636) TCGA-EB-A4IS-01 4 184368027 184368027 C T CDKN2AIP Missense_Mutation p.A397V 0.17 deleterious(0.01) unknown(0) TCGA-EB-A4IS-01 4 187524991 187524991 G A FAT1 Silent p.V3563V 0.33 TCGA-EB-A4IS-01 4 189026387 189026387 C T TRIML2 5'UTR 0.16 TCGA-EB-A4IS-01 4 289909 289909 G A ZNF732 Silent p.F13F 0.09 TCGA-EB-A4IS-01 4 37592683 37592683 T C C4orf19 3'UTR 0.30 TCGA-EB-A4IS-01 4 40776320 40776320 G A NSUN7 Missense_Mutation p.R176Q 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 4 42415028 42415028 C T ATP8A1 Missense_Mutation p.G1134R 0.19 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 4 44691374 44691374 T G GUF1 Missense_Mutation p.S384A 0.26 tolerated(1) probably_damaging(0.99) TCGA-EB-A4IS-01 4 46930495 46930495 C T GABRA4 Missense_Mutation p.G471E 0.11 tolerated_low_confidence(0.14) benign(0.012) TCGA-EB-A4IS-01 4 47571147 47571147 G A ATP10D Silent p.V1049V 0.22 TCGA-EB-A4IS-01 4 48032152 48032152 C T NIPAL1 Missense_Mutation p.S110F 0.17 deleterious(0.02) probably_damaging(1) TCGA-EB-A4IS-01 4 52860648 52860648 G A LRRC66 Missense_Mutation p.S847L 0.18 tolerated(0.26) benign(0.012) TCGA-EB-A4IS-01 4 6865107 6865107 G A KIAA0232 Missense_Mutation p.D1000N 0.33 deleterious(0.01) possibly_damaging(0.464) TCGA-EB-A4IS-01 4 71472389 71472389 G A AMBN Missense_Mutation p.G429E 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-EB-A4IS-01 4 71701973 71701973 G A GRSF1 Missense_Mutation p.P139L 0.25 deleterious(0.01) benign(0.001) TCGA-EB-A4IS-01 4 77116903 77116903 C T SCARB2 Missense_Mutation p.G78R 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 4 7714457 7714457 C T SORCS2 Intron 0.22 TCGA-EB-A4IS-01 4 84234394 84234394 C T HPSE Silent p.L182L 0.11 TCGA-EB-A4IS-01 4 85672726 85672726 G A WDFY3 Silent p.F1961F 0.28 TCGA-EB-A4IS-01 4 90857733 90857733 G A MMRN1 Missense_Mutation p.E968K 0.21 tolerated(0.07) benign(0.342) TCGA-EB-A4IS-01 4 93511326 93511326 C T GRID2 Missense_Mutation p.R45C 0.13 deleterious(0) probably_damaging(0.978) TCGA-EB-A4IS-01 4 94316852 94316852 C T GRID2 Missense_Mutation p.T447I 0.11 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 4 95206159 95206159 C T SMARCAD1 Silent p.S988S 0.14 TCGA-EB-A4IS-01 4 95508169 95508169 C T PDLIM5 Intron 0.28 TCGA-EB-A4IS-01 4 96075805 96075805 C T BMPR1B Missense_Mutation p.S527F 0.27 deleterious(0.03) possibly_damaging(0.722) TCGA-EB-A4IS-01 4 96075806 96075806 C T BMPR1B Silent p.S527S 0.27 TCGA-EB-A4IS-01 5 102342683 102342683 C T PAM Missense_Mutation p.P661L 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-EB-A4IS-01 5 110459516 110459516 C T WDR36 Missense_Mutation p.P777L 0.08 tolerated(0.06) possibly_damaging(0.78) TCGA-EB-A4IS-01 5 127671160 127671160 C T FBN2 Silent p.G1278G 0.11 TCGA-EB-A4IS-01 5 134782166 134782166 G A C5orf20 Silent p.S211S 0.22 TCGA-EB-A4IS-01 5 140202739 140202739 C T PCDHA5 Missense_Mutation p.T460I 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.634) TCGA-EB-A4IS-01 5 140476542 140476542 C T PCDHB2 Missense_Mutation p.S723L 0.11 tolerated_low_confidence(0.05) benign(0.013) TCGA-EB-A4IS-01 5 140720848 140720848 C T PCDHGA2 Silent p.F770F 0.34 TCGA-EB-A4IS-01 5 140750624 140750624 C T PCDHGB3 Silent p.S221S 0.24 TCGA-EB-A4IS-01 5 145631424 145631424 C T RBM27 Missense_Mutation p.T477I 0.27 tolerated(0.4) benign(0.005) TCGA-EB-A4IS-01 5 145631425 145631425 C A RBM27 Silent p.T477T 0.27 TCGA-EB-A4IS-01 5 147488380 147488380 G A SPINK5 Missense_Mutation p.V558I 0.11 tolerated(0.06) possibly_damaging(0.792) TCGA-EB-A4IS-01 5 147889227 147889227 G A HTR4 Missense_Mutation p.P290S 0.24 tolerated(0.32) probably_damaging(0.96) TCGA-EB-A4IS-01 5 147889228 147889228 G A HTR4 Silent p.V289V 0.24 TCGA-EB-A4IS-01 5 150080542 150080542 C T RBM22 Silent p.A2A 0.10 TCGA-EB-A4IS-01 5 151166205 151166205 C T G3BP1 Silent p.P8P 0.29 TCGA-EB-A4IS-01 5 151166206 151166206 C T G3BP1 Silent p.L9L 0.29 TCGA-EB-A4IS-01 5 154394142 154394142 C T KIF4B Silent p.L241L 0.31 TCGA-EB-A4IS-01 5 156590199 156590199 C T FAM71B Silent p.S359S 0.18 TCGA-EB-A4IS-01 5 156592873 156592873 C T FAM71B Missense_Mutation p.G103S 0.15 tolerated(0.44) benign(0.027) TCGA-EB-A4IS-01 5 167882394 167882394 C T WWC1 Missense_Mutation p.P898S 0.17 tolerated(0.3) benign(0.025) TCGA-EB-A4IS-01 5 169805786 169805786 G A KCNMB1 Silent p.F166F 0.27 TCGA-EB-A4IS-01 5 176309036 176309036 C T HK3 Missense_Mutation p.G716S 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 5 32053956 32053956 G A PDZD2 Missense_Mutation p.G623R 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 5 35955855 35955855 C T UGT3A1 Missense_Mutation p.G396E 0.17 tolerated(0.91) benign(0.009) TCGA-EB-A4IS-01 5 41149399 41149399 C T C6 Missense_Mutation p.S856N 0.29 deleterious(0) probably_damaging(0.983) TCGA-EB-A4IS-01 5 72183972 72183972 T G TNPO1 Missense_Mutation p.D457E 0.16 tolerated(0.07) benign(0.028) TCGA-EB-A4IS-01 5 82838004 82838004 C T VCAN Missense_Mutation p.S3061F 0.07 tolerated(1) benign(0.146) TCGA-EB-A4IS-01 5 87492144 87492144 A T TMEM161B Missense_Mutation p.F450I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A4IS-01 5 89949514 89949514 G A GPR98 Missense_Mutation p.D1375N 0.14 probably_damaging(0.945) TCGA-EB-A4IS-01 5 90012538 90012538 C T GPR98 Nonsense_Mutation p.R3147* 0.21 TCGA-EB-A4IS-01 5 94275871 94275871 C T MCTP1 Missense_Mutation p.D364N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4IS-01 5 96512941 96512941 C T RIOK2 Missense_Mutation p.R126K 0.34 deleterious(0) probably_damaging(0.98) TCGA-EB-A4IS-01 6 102069868 102069868 G A GRIK2 Missense_Mutation p.E54K 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 6 107070704 107070704 G A RTN4IP1 Missense_Mutation p.P139S 0.29 tolerated(0.15) probably_damaging(0.964) TCGA-EB-A4IS-01 6 109481892 109481892 C T CEP57L1 Silent p.I378I 0.42 TCGA-EB-A4IS-01 6 117609578 117609578 C T ROS1 3'UTR 0.31 TCGA-EB-A4IS-01 6 117718148 117718148 G A ROS1 Nonsense_Mutation p.Q237* 0.16 TCGA-EB-A4IS-01 6 12123937 12123937 C T HIVEP1 Silent p.S1303S 0.36 TCGA-EB-A4IS-01 6 130475993 130475993 G A SAMD3 Missense_Mutation p.P334S 0.28 tolerated(0.06) probably_damaging(0.973) TCGA-EB-A4IS-01 6 130762727 130762727 C T TMEM200A Missense_Mutation p.S387F 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A4IS-01 6 13185043 13185043 G A PHACTR1 Missense_Mutation p.S112N 0.18 tolerated(0.31) possibly_damaging(0.827) TCGA-EB-A4IS-01 6 146708083 146708083 G A GRM1 Missense_Mutation p.E554K 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-EB-A4IS-01 6 148861632 148861632 C T SASH1 Silent p.L717L 0.24 TCGA-EB-A4IS-01 6 152642893 152642893 G A SYNE1 Missense_Mutation p.P5349L 0.37 probably_damaging(0.999) TCGA-EB-A4IS-01 6 158541472 158541472 G A SERAC1 Missense_Mutation p.P384L 0.16 deleterious(0) probably_damaging(0.996) TCGA-EB-A4IS-01 6 160526076 160526076 C T IGF2R Missense_Mutation p.S2479F 0.20 deleterious(0) possibly_damaging(0.815) TCGA-EB-A4IS-01 6 161551978 161551978 G A AGPAT4 3'UTR 0.16 TCGA-EB-A4IS-01 6 168352615 168352615 C T MLLT4 Silent p.A1520A 0.17 TCGA-EB-A4IS-01 6 170627863 170627863 C T FAM120B Missense_Mutation p.P462L 0.26 tolerated_low_confidence(0.17) unknown(0) TCGA-EB-A4IS-01 6 17850625 17850625 C T KIF13A Missense_Mutation p.E216K 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-EB-A4IS-01 6 26413320 26413320 C T BTN3A1 Intron 0.27 TCGA-EB-A4IS-01 6 30128214 30128214 G A TRIM10 Missense_Mutation p.P141L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4IS-01 6 31130407 31130407 C T TCF19 Silent p.F317F 0.20 TCGA-EB-A4IS-01 6 31600510 31600510 C T PRRC2A Missense_Mutation p.P1354S 0.27 unknown(0) TCGA-EB-A4IS-01 6 31926872 31926872 G A SKIV2L 5'UTR 0.42 TCGA-EB-A4IS-01 6 31948483 31948483 C T STK19 Silent p.L322L 0.25 TCGA-EB-A4IS-01 6 32139098 32139098 C T AGPAT1 Missense_Mutation p.R59Q 0.19 deleterious(0.01) benign(0.266) TCGA-EB-A4IS-01 6 35423924 35423924 C T FANCE Missense_Mutation p.P217S 0.14 tolerated(0.37) benign(0.099) TCGA-EB-A4IS-01 6 35922986 35922986 G A SLC26A8 Silent p.I725I 0.25 TCGA-EB-A4IS-01 6 36269778 36269778 G A PNPLA1 Missense_Mutation p.G306R 0.20 deleterious(0.01) benign(0.081) TCGA-EB-A4IS-01 6 38758136 38758136 A G DNAH8 Silent p.Q695Q 0.25 TCGA-EB-A4IS-01 6 41162268 41162268 G A TREML2 Missense_Mutation p.S227F 0.20 tolerated(0.37) benign(0.023) TCGA-EB-A4IS-01 6 46826784 46826784 C T GPR116 Silent p.T952T 0.13 TCGA-EB-A4IS-01 6 46976810 46976810 G A GPR110 Silent p.I787I 0.20 TCGA-EB-A4IS-01 6 56819251 56819251 C T BEND6 5'Flank 0.38 TCGA-EB-A4IS-01 6 56819252 56819252 C T BEND6 5'Flank 0.38 TCGA-EB-A4IS-01 6 63995572 63995572 G A LGSN Missense_Mutation p.R84C 0.25 deleterious(0.01) possibly_damaging(0.717) TCGA-EB-A4IS-01 6 70040442 70040442 G A BAI3 Missense_Mutation p.G1027E 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 6 71003879 71003879 A T COL9A1 Silent p.V229V 0.19 TCGA-EB-A4IS-01 6 73821101 73821101 G A KCNQ5 Missense_Mutation p.R367K 0.27 deleterious(0.03) possibly_damaging(0.841) TCGA-EB-A4IS-01 6 73919583 73919583 G A RP11-257K9.8 3'UTR 0.33 TCGA-EB-A4IS-01 6 74227972 74227972 G A EEF1A1 Missense_Mutation p.H349Y 0.21 deleterious_low_confidence(0.02) benign(0.026) TCGA-EB-A4IS-01 6 84862782 84862782 G A KIAA1009 Silent p.A1037A 0.20 TCGA-EB-A4IS-01 6 84862783 84862783 G A KIAA1009 Missense_Mutation p.A1037V 0.20 tolerated(0.12) benign(0.094) TCGA-EB-A4IS-01 6 88854774 88854774 C T CNR1 Missense_Mutation p.D74N 0.30 tolerated_low_confidence(0.29) benign(0.027) TCGA-EB-A4IS-01 7 100225925 100225925 G A TFR2 Silent p.F465F 0.16 TCGA-EB-A4IS-01 7 100678595 100678595 A T MUC17 Missense_Mutation p.T1300S 0.21 unknown(0) TCGA-EB-A4IS-01 7 100683425 100683425 C T MUC17 Missense_Mutation p.P2910S 0.22 possibly_damaging(0.78) TCGA-EB-A4IS-01 7 117307056 117307056 G A CFTR Missense_Mutation p.R1446K 0.19 tolerated(0.22) benign(0.001) TCGA-EB-A4IS-01 7 126173043 126173043 A T GRM8 Missense_Mutation p.I798N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 7 128040226 128040226 G A IMPDH1 Missense_Mutation p.P266L 0.26 tolerated(0.07) benign(0.02) TCGA-EB-A4IS-01 7 137271876 137271876 C T DGKI Silent p.G464G 0.25 TCGA-EB-A4IS-01 7 138968652 138968652 T A UBN2 Missense_Mutation p.S1001T 0.34 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-EB-A4IS-01 7 140301735 140301735 C T DENND2A Missense_Mutation p.D155N 0.25 tolerated(0.11) probably_damaging(0.915) TCGA-EB-A4IS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-EB-A4IS-01 7 141734624 141734624 C T MGAM Missense_Mutation p.L648F 0.21 deleterious(0) probably_damaging(0.994) TCGA-EB-A4IS-01 7 142099508 142099508 G A TRBV7-8 Silent p.I98I 0.08 TCGA-EB-A4IS-01 7 144097313 144097313 G A NOBOX Missense_Mutation p.P313S 0.23 deleterious(0.03) probably_damaging(0.936) TCGA-EB-A4IS-01 7 147674957 147674957 G A CNTNAP2 Silent p.R753R 0.10 TCGA-EB-A4IS-01 7 149502620 149502620 C T SSPO RNA 0.11 TCGA-EB-A4IS-01 7 149515023 149515023 G A SSPO RNA 0.21 TCGA-EB-A4IS-01 7 155090268 155090268 C T INSIG1 Silent p.L91L 0.31 TCGA-EB-A4IS-01 7 158325469 158325469 T A PTPRN2 Intron 0.25 TCGA-EB-A4IS-01 7 23830533 23830533 G A STK31 Missense_Mutation p.D910N 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 7 32209435 32209435 C T PDE1C Silent p.Q90Q 0.20 TCGA-EB-A4IS-01 7 44804987 44804987 C T ZMIZ2 Missense_Mutation p.P684L 0.20 deleterious(0) benign(0.241) TCGA-EB-A4IS-01 7 45753582 45753582 G A ADCY1 Silent p.G1116G 0.26 TCGA-EB-A4IS-01 7 5569190 5569190 G A ACTB Silent p.S33S 0.21 TCGA-EB-A4IS-01 7 64864851 64864851 C A ZNF92 3'UTR 0.25 TCGA-EB-A4IS-01 7 72987747 72987747 G A TBL2 Silent p.T167T 0.34 TCGA-EB-A4IS-01 7 72987748 72987748 G A TBL2 Missense_Mutation p.T167I 0.33 tolerated(0.22) benign(0.002) TCGA-EB-A4IS-01 7 73932595 73932595 C T GTF2IRD1 Missense_Mutation p.P215L 0.11 tolerated(0.26) benign(0.022) TCGA-EB-A4IS-01 7 73932596 73932596 C T GTF2IRD1 Silent p.P215P 0.11 TCGA-EB-A4IS-01 7 81591769 81591769 T G CACNA2D1 Silent p.R941R 0.38 TCGA-EB-A4IS-01 7 81591770 81591770 C T CACNA2D1 Missense_Mutation p.R941Q 0.38 tolerated(0.09) benign(0.131) TCGA-EB-A4IS-01 7 82582407 82582407 G A PCLO Missense_Mutation p.S2621F 0.21 unknown(0) TCGA-EB-A4IS-01 7 82764646 82764646 G A PCLO Silent p.V740V 0.21 TCGA-EB-A4IS-01 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.27 tolerated(0.05) probably_damaging(0.997) TCGA-EB-A4IS-01 7 86416042 86416042 G A GRM3 Missense_Mutation p.G312S 0.27 tolerated(0.08) possibly_damaging(0.891) TCGA-EB-A4IS-01 7 87060865 87060865 G T ABCB4 Missense_Mutation p.T583N 0.09 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 8 120774820 120774820 A C TAF2 Missense_Mutation p.M798R 0.20 deleterious(0) benign(0.044) TCGA-EB-A4IS-01 8 124094997 124094997 C T TBC1D31 Missense_Mutation p.R94C 0.19 deleterious(0.01) possibly_damaging(0.677) TCGA-EB-A4IS-01 8 125047526 125047526 G A FER1L6 Silent p.G765G 0.20 TCGA-EB-A4IS-01 8 125061968 125061968 G A FER1L6 Missense_Mutation p.D949N 0.20 deleterious(0) possibly_damaging(0.896) TCGA-EB-A4IS-01 8 139691909 139691909 C T COL22A1 Missense_Mutation p.G1008E 0.15 unknown(0) TCGA-EB-A4IS-01 8 144239646 144239646 C A LY6H 3'UTR 0.21 TCGA-EB-A4IS-01 8 144944414 144944414 C T EPPK1 Missense_Mutation p.R1003Q 0.19 benign(0.006) TCGA-EB-A4IS-01 8 144946505 144946505 G A EPPK1 Missense_Mutation p.T306I 0.17 benign(0.02) TCGA-EB-A4IS-01 8 20038380 20038380 G A SLC18A1 Silent p.L32L 0.24 TCGA-EB-A4IS-01 8 20072466 20072466 C T ATP6V1B2 Silent p.T355T 0.22 TCGA-EB-A4IS-01 8 22475940 22475940 G A CCAR2 Missense_Mutation p.G718S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 8 22938900 22938900 C T RP11-875O11.2 RNA 0.15 TCGA-EB-A4IS-01 8 24250784 24250784 G A ADAMDEC1 Missense_Mutation p.E73K 0.16 tolerated(0.09) benign(0.059) TCGA-EB-A4IS-01 8 24810395 24810395 G A CTD-2168K21.2 5'Flank 0.28 TCGA-EB-A4IS-01 8 30702583 30702583 G A TEX15 Silent p.F1317F 0.18 TCGA-EB-A4IS-01 8 33371044 33371044 A T TTI2 5'UTR 0.12 TCGA-EB-A4IS-01 8 49833813 49833813 G A SNAI2 Silent p.S4S 0.23 TCGA-EB-A4IS-01 8 55541273 55541273 C T RP1 Missense_Mutation p.P1611S 0.27 tolerated(0.75) benign(0.007) TCGA-EB-A4IS-01 8 57079269 57079269 G A PLAG1 Missense_Mutation p.P346S 0.25 tolerated(0.62) benign(0.043) TCGA-EB-A4IS-01 8 57080774 57080774 G A PLAG1 Missense_Mutation p.P19S 0.27 tolerated(0.15) probably_damaging(0.968) TCGA-EB-A4IS-01 8 6782433 6782433 G A DEFA6 Silent p.F70F 0.30 TCGA-EB-A4IS-01 8 73480448 73480448 G A KCNB2 Missense_Mutation p.R160Q 0.08 tolerated(0.09) benign(0.139) TCGA-EB-A4IS-01 8 74917117 74917117 C T LY96 Missense_Mutation p.P67S 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A4IS-01 8 98991178 98991178 C T MATN2 Silent p.S341S 0.24 TCGA-EB-A4IS-01 9 101904856 101904856 T G TGFBR1 Missense_Mutation p.Y282D 0.28 deleterious(0) probably_damaging(0.991) TCGA-EB-A4IS-01 9 114476878 114476878 G C C9orf84 Missense_Mutation p.I690M 0.50 deleterious(0) benign(0.445) TCGA-EB-A4IS-01 9 125681195 125681195 G A ZBTB26 Missense_Mutation p.S340F 0.32 deleterious(0) possibly_damaging(0.871) TCGA-EB-A4IS-01 9 130947941 130947941 G A CIZ1 Missense_Mutation p.S158F 0.09 deleterious(0) possibly_damaging(0.878) TCGA-EB-A4IS-01 9 140001789 140001789 C T MAN1B1 Missense_Mutation p.L552F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A4IS-01 9 140001791 140001791 C A MAN1B1 Silent p.L552L 0.34 TCGA-EB-A4IS-01 9 140100160 140100160 C T NDOR1 5'UTR 0.42 TCGA-EB-A4IS-01 9 140100161 140100161 C T NDOR1 5'UTR 0.42 TCGA-EB-A4IS-01 9 140772636 140772636 T C CACNA1B Missense_Mutation p.V84A 0.21 deleterious(0) benign(0.02) TCGA-EB-A4IS-01 9 14842327 14842327 C T FREM1 Silent p.G575G 0.22 TCGA-EB-A4IS-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 9 23704986 23704986 C A ELAVL2 Missense_Mutation p.K139N 0.37 tolerated(0.22) benign(0.011) TCGA-EB-A4IS-01 9 32633044 32633044 C T TAF1L Missense_Mutation p.R845Q 0.30 deleterious(0.04) benign(0.037) TCGA-EB-A4IS-01 9 34343217 34343217 G A NUDT2 Missense_Mutation p.G75R 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A4IS-01 9 35870205 35870205 T C OR13J1 Missense_Mutation p.N65S 0.32 deleterious(0) benign(0.427) TCGA-EB-A4IS-01 9 79862172 79862172 C T VPS13A Intron 0.32 TCGA-EB-A4IS-01 9 84607231 84607231 C T SPATA31D1 Missense_Mutation p.L616F 0.30 tolerated(0.29) possibly_damaging(0.903) TCGA-EB-A4IS-01 9 91686137 91686137 A T SHC3 Missense_Mutation p.S254T 0.29 deleterious(0) probably_damaging(0.997) TCGA-EB-A4IS-01 X 100626688 100626688 C T BTK Missense_Mutation p.R81K 0.60 tolerated(0.55) benign(0.001) TCGA-EB-A4IS-01 X 100912350 100912350 G A ARMCX2 Silent p.V75V 0.45 TCGA-EB-A4IS-01 X 101091709 101091709 G A NXF5 Intron 0.46 TCGA-EB-A4IS-01 X 101826401 101826401 C T NXF4 RNA 0.64 TCGA-EB-A4IS-01 X 107869502 107869502 G A COL4A5 Missense_Mutation p.G1057R 0.55 unknown(0) TCGA-EB-A4IS-01 X 107911634 107911634 C T COL4A5 Silent p.F1230F 0.45 TCGA-EB-A4IS-01 X 111078209 111078209 G A TRPC5 Silent p.S612S 0.41 TCGA-EB-A4IS-01 X 117742078 117742078 G A DOCK11 Missense_Mutation p.D909N 0.53 deleterious(0.03) benign(0.146) TCGA-EB-A4IS-01 X 120181835 120181835 G A GLUD2 Silent p.R99R 0.53 TCGA-EB-A4IS-01 X 123518165 123518165 G A TENM1 Nonsense_Mutation p.R2206* 0.51 TCGA-EB-A4IS-01 X 123518166 123518166 G A TENM1 Silent p.L2205L 0.51 TCGA-EB-A4IS-01 X 129519149 129519149 G A GPR119 Silent p.A91A 0.20 TCGA-EB-A4IS-01 X 129519150 129519150 G A GPR119 Missense_Mutation p.A91V 0.21 deleterious(0.03) possibly_damaging(0.836) TCGA-EB-A4IS-01 X 135439873 135439873 G A GPR112 Missense_Mutation p.R2313K 0.45 tolerated(0.32) benign(0.012) TCGA-EB-A4IS-01 X 138679654 138679654 C T MCF2 Missense_Mutation p.D750N 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A4IS-01 X 140994865 140994865 C T MAGEC1 Silent p.L559L 0.53 TCGA-EB-A4IS-01 X 147106386 147106386 G A FMR1NB Missense_Mutation p.E212K 0.55 tolerated(1) possibly_damaging(0.502) TCGA-EB-A4IS-01 X 150349046 150349046 G A GPR50 Missense_Mutation p.E331K 0.45 tolerated(0.08) possibly_damaging(0.504) TCGA-EB-A4IS-01 X 150844576 150844576 G A PASD1 Silent p.L761L 0.46 TCGA-EB-A4IS-01 X 26212683 26212683 C T MAGEB6 Silent p.T240T 0.29 TCGA-EB-A4IS-01 X 34148613 34148613 C T FAM47A Missense_Mutation p.V595I 0.59 tolerated(0.36) benign(0.023) TCGA-EB-A4IS-01 X 48163047 48163047 C T SSX9 RNA 0.27 TCGA-EB-A4IS-01 X 55479047 55479047 C T MAGEH1 Silent p.P80P 0.70 TCGA-EB-A4IS-01 X 65427054 65427054 T C HEPH Missense_Mutation p.L824P 0.69 deleterious(0) probably_damaging(0.999) TCGA-EB-A4IS-01 X 69255270 69255270 C T EDA Silent p.F329F 0.29 TCGA-EB-A4IS-01 X 71493688 71493688 C T RPS4X Silent p.E165E 0.78 TCGA-EB-A4OY-01 10 105420799 105420799 G C SH3PXD2A Missense_Mutation p.N182K 0.20 deleterious(0.03) probably_damaging(0.96) TCGA-EB-A4OY-01 11 67803764 67803764 G T NDUFS8 Silent p.R139R 0.24 TCGA-EB-A4OY-01 12 121426830 121426830 C T HNF1A Missense_Mutation p.A174V 0.20 tolerated(0.22) benign(0.167) TCGA-EB-A4OY-01 12 123339674 123339674 A C HIP1R Missense_Mutation p.E284A 0.27 deleterious(0.04) possibly_damaging(0.685) TCGA-EB-A4OY-01 12 133732769 133732769 A C ZNF10 Missense_Mutation p.K313Q 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A4OY-01 12 53045434 53045434 C T KRT2 Missense_Mutation p.V165M 0.24 deleterious(0.04) possibly_damaging(0.906) TCGA-EB-A4OY-01 12 53664186 53664186 C T ESPL1 Nonsense_Mutation p.Q390* 0.21 TCGA-EB-A4OY-01 12 98992445 98992445 C T SLC25A3 Missense_Mutation p.A203V 0.27 tolerated(0.12) benign(0.075) TCGA-EB-A4OY-01 13 19751332 19751332 C A TUBA3C Missense_Mutation p.R264L 0.38 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EB-A4OY-01 14 22133491 22133491 T C OR4E2 Silent p.N65N 0.19 TCGA-EB-A4OY-01 14 53619556 53619556 C G DDHD1 Missense_Mutation p.E87D 0.10 tolerated_low_confidence(0.31) benign(0.006) TCGA-EB-A4OY-01 14 71209102 71209102 C A MAP3K9 Missense_Mutation p.K511N 0.19 deleterious(0) possibly_damaging(0.87) TCGA-EB-A4OY-01 15 44941192 44941192 T C SPG11 Missense_Mutation p.I492V 0.28 tolerated(1) benign(0.047) TCGA-EB-A4OY-01 15 65918233 65918233 T C SLC24A1 Silent p.H605H 0.06 TCGA-EB-A4OY-01 16 30006059 30006059 G C HIRIP3 Nonsense_Mutation p.S136* 0.07 TCGA-EB-A4OY-01 16 48594763 48594763 T C N4BP1 Silent p.R597R 0.16 TCGA-EB-A4OY-01 16 53726072 53726072 G A RPGRIP1L Silent p.Y145Y 0.32 TCGA-EB-A4OY-01 17 33520479 33520479 C T SLC35G3 Missense_Mutation p.C283Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4OY-01 17 38152483 38152483 C G PSMD3 Silent p.G456G 0.23 TCGA-EB-A4OY-01 17 4017708 4017708 T G ZZEF1 Missense_Mutation p.K251Q 0.32 tolerated(0.27) possibly_damaging(0.646) TCGA-EB-A4OY-01 17 43008985 43008985 C T KIF18B Missense_Mutation p.G501E 0.20 tolerated(1) benign(0.006) TCGA-EB-A4OY-01 17 4857004 4857004 C A ENO3 Intron 0.16 TCGA-EB-A4OY-01 17 57134361 57134361 A T TRIM37 Missense_Mutation p.N358K 0.18 deleterious(0.02) probably_damaging(0.973) TCGA-EB-A4OY-01 17 7830986 7830986 T G KCNAB3 Missense_Mutation p.I105L 0.24 tolerated(0.14) probably_damaging(0.999) TCGA-EB-A4OY-01 17 8219100 8219100 G A ARHGEF15 Silent p.V483V 0.09 TCGA-EB-A4OY-01 19 15079275 15079275 G A SLC1A6 Missense_Mutation p.R130W 0.26 tolerated(0.07) possibly_damaging(0.767) TCGA-EB-A4OY-01 19 15132166 15132166 G A CCDC105 Silent p.A292A 0.11 TCGA-EB-A4OY-01 19 4504899 4504899 T C PLIN4 Missense_Mutation p.S1241G 0.24 tolerated(0.48) benign(0.02) TCGA-EB-A4OY-01 19 49971706 49971706 G A ALDH16A1 Silent p.P669P 0.09 TCGA-EB-A4OY-01 19 55284920 55284920 C A KIR2DL1 Missense_Mutation p.T69N 0.12 tolerated(0.34) probably_damaging(0.998) TCGA-EB-A4OY-01 19 56487562 56487562 T A NLRP8 Missense_Mutation p.N923K 0.15 deleterious(0) possibly_damaging(0.792) TCGA-EB-A4OY-01 1 109273432 109273432 T G FNDC7 Silent p.T587T 0.19 TCGA-EB-A4OY-01 1 150468960 150468960 C G TARS2 Missense_Mutation p.N259K 0.12 deleterious(0) possibly_damaging(0.672) TCGA-EB-A4OY-01 1 228474605 228474605 G A OBSCN Missense_Mutation p.G3566R 0.14 possibly_damaging(0.606) TCGA-EB-A4OY-01 1 27240111 27240111 A T NR0B2 Missense_Mutation p.F107L 0.21 deleterious(0.05) possibly_damaging(0.777) TCGA-EB-A4OY-01 20 46262832 46262832 C T NCOA3 Silent p.F335F 0.16 TCGA-EB-A4OY-01 20 47580376 47580376 A G ARFGEF2 Missense_Mutation p.D283G 0.15 tolerated(0.16) benign(0.027) TCGA-EB-A4OY-01 20 49511038 49511038 T C ADNP Silent p.T71T 0.16 TCGA-EB-A4OY-01 21 43319241 43319241 G A C2CD2 Silent p.V597V 0.05 TCGA-EB-A4OY-01 21 43321836 43321836 C T C2CD2 Silent p.S485S 0.15 TCGA-EB-A4OY-01 21 46086466 46086466 A G KRTAP12-2 Missense_Mutation p.V113A 0.17 tolerated(0.55) possibly_damaging(0.711) TCGA-EB-A4OY-01 22 43831006 43831006 G A MPPED1 Missense_Mutation p.V93I 0.17 deleterious(0) possibly_damaging(0.874) TCGA-EB-A4OY-01 22 45749907 45749907 A G SMC1B Missense_Mutation p.I1075T 0.15 tolerated(0.27) benign(0.087) TCGA-EB-A4OY-01 2 220112399 220112399 C T STK16 Missense_Mutation p.R193W 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A4OY-01 2 239253162 239253162 C G TRAF3IP1 Nonsense_Mutation p.S395* 0.25 TCGA-EB-A4OY-01 3 164781303 164781303 T G SI Missense_Mutation p.Q278H 0.16 tolerated(1) benign(0.013) TCGA-EB-A4OY-01 3 43756543 43756543 A G ABHD5 Missense_Mutation p.T256A 0.15 tolerated(0.12) benign(0.009) TCGA-EB-A4OY-01 3 50414955 50414955 G A CACNA2D2 Silent p.G523G 0.13 TCGA-EB-A4OY-01 4 103867814 103867814 A G SLC9B1 Missense_Mutation p.L172P 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A4OY-01 4 83778132 83778132 G A SEC31A Silent p.F618F 0.53 TCGA-EB-A4OY-01 5 109049257 109049257 T G MAN2A1 Missense_Mutation p.L58V 0.25 deleterious(0.02) benign(0.082) TCGA-EB-A4OY-01 5 126993477 126993477 C G CTXN3 3'UTR 0.09 TCGA-EB-A4OY-01 5 150076186 150076186 G A RBM22 Missense_Mutation p.R152W 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-EB-A4OY-01 5 58287686 58287686 T G PDE4D Missense_Mutation p.K387N 0.53 tolerated_low_confidence(0.14) benign(0.001) TCGA-EB-A4OY-01 6 12292703 12292703 A G EDN1 Missense_Mutation p.Y65C 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A4OY-01 6 131937080 131937080 A G MED23 Silent p.D281D 0.07 TCGA-EB-A4OY-01 6 18207632 18207632 T C KDM1B Missense_Mutation p.S323P 0.08 deleterious(0) unknown(0) TCGA-EB-A4OY-01 6 31696023 31696023 C T DDAH2 Missense_Mutation p.R173H 0.15 deleterious(0) probably_damaging(0.947) TCGA-EB-A4OY-01 6 36334419 36334419 C A ETV7 3'UTR 0.16 TCGA-EB-A4OY-01 6 83847482 83847482 A T DOPEY1 Missense_Mutation p.I1241F 0.17 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-EB-A4OY-01 7 113518628 113518628 C T PPP1R3A Missense_Mutation p.G840E 0.16 deleterious(0.02) benign(0.049) TCGA-EB-A4OY-01 7 114299424 114299424 C G FOXP2 Missense_Mutation p.N519K 0.19 deleterious(0) unknown(0) TCGA-EB-A4OY-01 7 134878103 134878103 C T WDR91 Silent p.S513S 0.09 TCGA-EB-A4OY-01 7 82784630 82784630 G A PCLO Nonsense_Mutation p.Q443* 0.15 TCGA-EB-A4OY-01 8 100523393 100523393 C A VPS13B Missense_Mutation p.T1454K 0.13 deleterious(0) probably_damaging(0.966) TCGA-EB-A4OY-01 8 29207480 29207480 T C DUSP4 Missense_Mutation p.I106V 0.40 tolerated(1) benign(0.002) TCGA-EB-A4OY-01 8 95479763 95479763 C T RAD54B Missense_Mutation p.R2K 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EB-A4OY-01 9 117359956 117359956 A G ATP6V1G1 Missense_Mutation p.D97G 0.21 tolerated(0.25) benign(0.007) TCGA-EB-A4OY-01 9 136269951 136269951 G A C9orf96 Missense_Mutation p.G591S 0.16 tolerated(0.52) benign(0.006) TCGA-EB-A4OY-01 9 90311961 90311961 C T DAPK1 Missense_Mutation p.P818L 0.09 deleterious(0.01) possibly_damaging(0.714) TCGA-EB-A4OY-01 X 154133231 154133231 T C F8 Missense_Mutation p.D1814G 0.12 tolerated(0.15) benign(0.21) TCGA-EB-A4OY-01 X 23933851 23933851 T C CXorf58 Missense_Mutation p.V84A 0.19 deleterious(0.04) possibly_damaging(0.833) TCGA-EB-A4OZ-01 12 6619640 6619640 G A NCAPD2 Intron 0.07 TCGA-EB-A4OZ-01 14 24035813 24035813 T C AP1G2 Missense_Mutation p.E96G 0.09 deleterious(0) probably_damaging(0.999) TCGA-EB-A4OZ-01 14 65239464 65239464 G T SPTB Missense_Mutation p.S1796Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A4OZ-01 15 42371952 42371952 A G PLA2G4D Missense_Mutation p.M367T 0.15 deleterious(0) probably_damaging(0.934) TCGA-EB-A4OZ-01 16 20435364 20435364 C A ACSM5 Silent p.P298P 0.15 TCGA-EB-A4OZ-01 19 56435981 56435981 T G NLRP13 Missense_Mutation p.E144D 0.07 tolerated(0.46) benign(0.01) TCGA-EB-A4OZ-01 1 157803157 157803157 C T CD5L Silent p.G288G 0.08 TCGA-EB-A4OZ-01 1 201081402 201081402 C A CACNA1S Missense_Mutation p.E22D 0.08 tolerated(0.45) benign(0.119) TCGA-EB-A4OZ-01 1 230807286 230807286 T G COG2 Missense_Mutation p.S267A 0.13 tolerated(0.26) benign(0.003) TCGA-EB-A4OZ-01 2 100210296 100210296 C T AFF3 Silent p.A634A 0.14 TCGA-EB-A4OZ-01 2 71896855 71896855 A T DYSF Missense_Mutation p.Q1921H 0.13 deleterious(0) probably_damaging(0.917) TCGA-EB-A4OZ-01 3 52551564 52551564 A G STAB1 Splice_Site p.X1522_splice 0.10 TCGA-EB-A4OZ-01 6 111210061 111210061 G C AMD1 Missense_Mutation p.E67Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-EB-A4OZ-01 7 40220558 40220558 T C SUGCT Missense_Mutation p.I45T 0.10 tolerated(0.67) benign(0.002) TCGA-EB-A4OZ-01 8 67546931 67546931 A G VCPIP1 Silent p.P1158P 0.06 TCGA-EB-A4OZ-01 X 140985282 140985282 G T MAGEC3 Intron 0.08 TCGA-EB-A4P0-01 10 111648282 111648282 C T XPNPEP1 Missense_Mutation p.D163N 0.80 deleterious(0.02) possibly_damaging(0.862) TCGA-EB-A4P0-01 10 117884746 117884746 C T GFRA1 Silent p.T252T 0.70 TCGA-EB-A4P0-01 10 51464939 51464939 C A AGAP7 Missense_Mutation p.R506M 0.13 tolerated(0.33) benign(0.002) TCGA-EB-A4P0-01 10 61012746 61012746 C T FAM13C Missense_Mutation p.D449N 0.78 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A4P0-01 10 71025513 71025513 G A HKDC1 Missense_Mutation p.G849R 0.65 tolerated(0.05) benign(0.018) TCGA-EB-A4P0-01 10 96797060 96797060 C T CYP2C8 Missense_Mutation p.R433Q 0.90 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A4P0-01 10 99969446 99969446 C T R3HCC1L Silent p.A525A 0.74 TCGA-EB-A4P0-01 11 101833124 101833124 C T KIAA1377 Missense_Mutation p.P453L 0.17 tolerated(0.13) benign(0.081) TCGA-EB-A4P0-01 11 120008570 120008570 C T TRIM29 Missense_Mutation p.G57D 0.08 deleterious_low_confidence(0) benign(0.424) TCGA-EB-A4P0-01 11 121492954 121492954 G A SORL1 Missense_Mutation p.E2050K 0.68 deleterious(0.04) possibly_damaging(0.777) TCGA-EB-A4P0-01 11 32663547 32663547 C T CCDC73 Missense_Mutation p.E341K 0.62 deleterious(0.02) possibly_damaging(0.903) TCGA-EB-A4P0-01 11 47746167 47746167 G A FNBP4 Silent p.P724P 0.16 TCGA-EB-A4P0-01 11 48510565 48510565 C T OR4A47 Missense_Mutation p.S74F 0.11 deleterious_low_confidence(0) benign(0.211) TCGA-EB-A4P0-01 11 5686820 5686820 T C TRIM5 Intron 0.59 TCGA-EB-A4P0-01 11 57982358 57982358 T A OR1S1 Missense_Mutation p.Y48N 0.22 deleterious(0) possibly_damaging(0.847) TCGA-EB-A4P0-01 11 61544786 61544786 G A MYRF Silent p.R547R 0.33 TCGA-EB-A4P0-01 11 69625109 69625109 C T FGF3 Silent p.S228S 0.23 TCGA-EB-A4P0-01 11 75316930 75316930 C T MAP6 Silent p.A413A 0.31 TCGA-EB-A4P0-01 11 75852180 75852180 C T UVRAG Missense_Mutation p.S608F 0.29 tolerated_low_confidence(0.73) benign(0.004) TCGA-EB-A4P0-01 11 76162908 76162908 A T C11orf30 Missense_Mutation p.E26V 0.12 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EB-A4P0-01 11 82643599 82643599 G A C11orf82 Missense_Mutation p.D407N 0.35 tolerated(0.32) benign(0.022) TCGA-EB-A4P0-01 12 131569131 131569131 G A GPR133 Missense_Mutation p.G532R 0.47 deleterious(0.04) possibly_damaging(0.833) TCGA-EB-A4P0-01 12 133249282 133249282 G A POLE Silent p.Y539Y 0.09 TCGA-EB-A4P0-01 12 27845736 27845736 T G PPFIBP1 Nonsense_Mutation p.L986* 0.14 TCGA-EB-A4P0-01 12 2968469 2968469 G A FOXM1 Missense_Mutation p.R581W 0.08 deleterious(0) probably_damaging(0.995) TCGA-EB-A4P0-01 12 51759241 51759241 C T GALNT6 Missense_Mutation p.E263K 0.54 tolerated(0.06) possibly_damaging(0.672) TCGA-EB-A4P0-01 12 56232489 56232489 C T MMP19 Missense_Mutation p.E266K 0.21 tolerated(0.13) possibly_damaging(0.585) TCGA-EB-A4P0-01 12 56713271 56713271 C G PAN2 Missense_Mutation p.V1035L 0.28 deleterious(0) probably_damaging(0.986) TCGA-EB-A4P0-01 12 77423956 77423956 G A E2F7 Silent p.S513S 0.62 TCGA-EB-A4P0-01 13 113771799 113771799 G A F7 Missense_Mutation p.V232M 0.49 tolerated(0.22) benign(0.053) TCGA-EB-A4P0-01 13 20039669 20039669 A T TPTE2 Missense_Mutation p.I183N 0.46 deleterious(0) probably_damaging(0.949) TCGA-EB-A4P0-01 13 25399880 25399880 G A RNF17 Missense_Mutation p.D739N 0.25 deleterious(0) probably_damaging(0.989) TCGA-EB-A4P0-01 13 25486802 25486802 T C CENPJ Missense_Mutation p.N121S 0.48 tolerated(0.42) benign(0.01) TCGA-EB-A4P0-01 13 28141911 28141911 G A LNX2 Missense_Mutation p.P241S 0.38 deleterious(0.03) probably_damaging(1) TCGA-EB-A4P0-01 13 70275875 70275875 C A KLHL1 Missense_Mutation p.G736W 0.22 deleterious(0) probably_damaging(0.997) TCGA-EB-A4P0-01 14 105181010 105181010 G A INF2 Missense_Mutation p.D1171N 0.11 tolerated_low_confidence(0.14) unknown(0) TCGA-EB-A4P0-01 14 105936405 105936405 G A MTA1 Silent p.K667K 0.37 TCGA-EB-A4P0-01 14 106207967 106207967 G A IGHG1 Missense_Mutation p.P279L 0.33 deleterious(0) possibly_damaging(0.827) TCGA-EB-A4P0-01 14 20345076 20345076 C T OR4K2 Missense_Mutation p.S217L 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 14 23854227 23854227 C T MYH6 Silent p.K1729K 0.44 TCGA-EB-A4P0-01 14 73137777 73137777 C T DPF3 3'UTR 0.45 TCGA-EB-A4P0-01 15 40758302 40758302 C T BAHD1 Silent p.H772H 0.30 TCGA-EB-A4P0-01 15 41058048 41058048 C T GCHFR Silent p.G20G 0.38 TCGA-EB-A4P0-01 15 42052717 42052717 T A MGA Missense_Mutation p.I2463N 0.48 deleterious(0) probably_damaging(0.998) TCGA-EB-A4P0-01 15 42185662 42185662 G A SPTBN5 Missense_Mutation p.L12F 0.57 probably_damaging(0.983) TCGA-EB-A4P0-01 15 45562402 45562402 G A SLC28A2 Missense_Mutation p.E526K 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 15 82336140 82336140 G A MEX3B Silent p.P357P 0.39 TCGA-EB-A4P0-01 15 86311959 86311959 G A KLHL25 Silent p.Y361Y 0.17 TCGA-EB-A4P0-01 15 86808062 86808062 G A AGBL1 Missense_Mutation p.V508I 0.40 tolerated(0.21) benign(0.015) TCGA-EB-A4P0-01 15 94841937 94841937 G A MCTP2 Missense_Mutation p.G148E 0.40 tolerated(1) benign(0.001) TCGA-EB-A4P0-01 16 1816398 1816398 C G MAPK8IP3 Missense_Mutation p.P935R 0.38 tolerated(0.35) benign(0) TCGA-EB-A4P0-01 16 20352644 20352644 C T UMOD Missense_Mutation p.R449K 0.55 deleterious(0.01) benign(0.055) TCGA-EB-A4P0-01 16 20976586 20976586 T G DNAH3 Missense_Mutation p.I2874L 0.46 deleterious(0.02) benign(0.32) TCGA-EB-A4P0-01 16 27504601 27504601 T A GTF3C1 Missense_Mutation p.E932V 0.28 deleterious(0) possibly_damaging(0.634) TCGA-EB-A4P0-01 16 30094130 30094130 T A PPP4C Missense_Mutation p.Y89N 0.47 tolerated(0.16) benign(0.047) TCGA-EB-A4P0-01 16 31282366 31282366 C T ITGAM Silent p.V173V 0.45 TCGA-EB-A4P0-01 16 31478085 31478085 C T ARMC5 Missense_Mutation p.P895S 0.27 deleterious(0.03) possibly_damaging(0.801) TCGA-EB-A4P0-01 16 3526276 3526276 C T NAA60 Missense_Mutation p.L17F 0.43 tolerated(1) benign(0) TCGA-EB-A4P0-01 16 66997463 66997463 C T CES3 Silent p.S119S 0.35 TCGA-EB-A4P0-01 16 75263520 75263520 G A BCAR1 Silent p.A880A 0.21 TCGA-EB-A4P0-01 17 10399321 10399321 G A MYH1 Silent p.I1705I 0.23 TCGA-EB-A4P0-01 17 10440553 10440553 C T MYH2 Missense_Mutation p.G632R 0.38 tolerated(0.22) benign(0.002) TCGA-EB-A4P0-01 17 12666697 12666697 C T MYOCD Silent p.F899F 0.44 TCGA-EB-A4P0-01 17 26822696 26822696 G A SLC13A2 Silent p.L493L 0.42 TCGA-EB-A4P0-01 17 26883947 26883947 G A PIGS Silent p.L326L 0.46 TCGA-EB-A4P0-01 17 3627889 3627889 C T GSG2 Silent p.S220S 0.33 TCGA-EB-A4P0-01 17 39723904 39723904 C T KRT9 Missense_Mutation p.G498D 0.68 tolerated_low_confidence(0.29) unknown(0) TCGA-EB-A4P0-01 17 40652809 40652809 C T ATP6V0A1 Silent p.I595I 0.15 TCGA-EB-A4P0-01 17 40825199 40825199 G A PLEKHH3 Missense_Mutation p.A255V 0.20 tolerated(0.52) unknown(0) TCGA-EB-A4P0-01 17 42882898 42882898 G A GJC1 Silent p.I96I 0.51 TCGA-EB-A4P0-01 17 4714224 4714224 C T PLD2 Missense_Mutation p.R330W 0.21 deleterious(0) probably_damaging(0.965) TCGA-EB-A4P0-01 17 47284003 47284003 G A GNGT2 3'UTR 0.47 TCGA-EB-A4P0-01 17 56388494 56388494 C T BZRAP1 Silent p.E1054E 0.29 TCGA-EB-A4P0-01 17 72306269 72306269 C T DNAI2 Silent p.T487T 0.42 TCGA-EB-A4P0-01 17 7504810 7504810 G A FXR2 Silent p.L193L 0.35 TCGA-EB-A4P0-01 17 76476804 76476804 G A DNAH17 Missense_Mutation p.P2558S 0.15 probably_damaging(0.996) TCGA-EB-A4P0-01 17 76476805 76476805 G A DNAH17 Silent p.N2557N 0.15 TCGA-EB-A4P0-01 17 79225062 79225062 G A SLC38A10 Intron 0.39 TCGA-EB-A4P0-01 17 80039897 80039897 C T FASN Missense_Mutation p.E2051K 0.09 deleterious(0.03) benign(0.009) TCGA-EB-A4P0-01 17 9632275 9632275 C T USP43 Nonsense_Mutation p.R1114* 0.41 TCGA-EB-A4P0-01 18 163367 163367 C T USP14 Missense_Mutation p.P26S 0.54 deleterious(0.01) probably_damaging(0.959) TCGA-EB-A4P0-01 18 6093469 6093469 G A L3MBTL4 Missense_Mutation p.R420C 0.42 deleterious(0.02) benign(0.007) TCGA-EB-A4P0-01 19 10439588 10439588 G A RAVER1 Silent p.F179F 0.29 TCGA-EB-A4P0-01 19 11287481 11287481 T G KANK2 Silent p.S519S 0.21 TCGA-EB-A4P0-01 19 13394150 13394150 C T CACNA1A Missense_Mutation p.M1251I 0.59 benign(0) TCGA-EB-A4P0-01 19 3964974 3964974 G A DAPK3 Silent p.I26I 0.55 TCGA-EB-A4P0-01 19 41522588 41522588 G A CYP2B6 Silent p.A444A 0.28 TCGA-EB-A4P0-01 19 41522589 41522589 G A CYP2B6 Missense_Mutation p.E445K 0.27 deleterious(0) probably_damaging(0.974) TCGA-EB-A4P0-01 19 42354506 42354506 G A DMRTC2 Intron 0.59 TCGA-EB-A4P0-01 19 4694776 4694776 G A DPP9 Silent p.L471L 0.48 TCGA-EB-A4P0-01 19 49167833 49167833 C T NTN5 Intron 0.58 TCGA-EB-A4P0-01 19 49993751 49993751 C T RPL13A Silent p.L58L 0.39 TCGA-EB-A4P0-01 19 49993752 49993752 C T RPL13A Missense_Mutation p.R59C 0.40 deleterious(0.05) benign(0.055) TCGA-EB-A4P0-01 19 52327897 52327897 C A FPR3 Missense_Mutation p.P299Q 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 19 54417819 54417819 G A CACNG7 Missense_Mutation p.E88K 0.26 deleterious(0) benign(0.375) TCGA-EB-A4P0-01 19 54444846 54444846 G A CACNG7 Missense_Mutation p.A183T 0.47 deleterious(0) possibly_damaging(0.619) TCGA-EB-A4P0-01 19 56369821 56369821 G A NLRP4 Silent p.E354E 0.66 TCGA-EB-A4P0-01 19 56531793 56531793 A C NLRP5 Missense_Mutation p.E225D 0.26 tolerated(0.63) benign(0) TCGA-EB-A4P0-01 19 8976763 8976763 G A MUC16 Silent p.S14101S 0.26 TCGA-EB-A4P0-01 19 9089089 9089089 G A MUC16 Missense_Mutation p.A909V 0.57 unknown(0) TCGA-EB-A4P0-01 19 9801205 9801205 C T ZNF812 Missense_Mutation p.R325Q 0.21 tolerated(0.06) benign(0.088) TCGA-EB-A4P0-01 1 145115950 145115950 G A SEC22B RNA 0.08 TCGA-EB-A4P0-01 1 151787772 151787772 C T RORC Missense_Mutation p.G143E 0.31 tolerated(0.82) benign(0.001) TCGA-EB-A4P0-01 1 153043216 153043216 C T SPRR2B Missense_Mutation p.E34K 0.47 deleterious_low_confidence(0.05) unknown(0) TCGA-EB-A4P0-01 1 153314209 153314209 G A PGLYRP4 Silent p.I173I 0.52 TCGA-EB-A4P0-01 1 154310052 154310052 A T ATP8B2 Intron 0.39 TCGA-EB-A4P0-01 1 155629344 155629344 G A YY1AP1 3'UTR 0.55 TCGA-EB-A4P0-01 1 157773887 157773887 C T FCRL1 Missense_Mutation p.A23T 0.34 tolerated(0.13) benign(0.257) TCGA-EB-A4P0-01 1 158449920 158449920 A C OR10R2 Missense_Mutation p.I85L 0.52 tolerated(0.07) benign(0.02) TCGA-EB-A4P0-01 1 159897973 159897973 C T IGSF9 Missense_Mutation p.E1069K 0.56 tolerated(0.12) possibly_damaging(0.715) TCGA-EB-A4P0-01 1 169519975 169519975 G A F5 Silent p.I433I 0.53 TCGA-EB-A4P0-01 1 169566395 169566395 G A SELP Silent p.L575L 0.27 TCGA-EB-A4P0-01 1 17690148 17690148 C T PADI4 Silent p.I630I 0.26 TCGA-EB-A4P0-01 1 18554414 18554414 G A IGSF21 Silent p.E31E 0.53 TCGA-EB-A4P0-01 1 202287330 202287330 A C LGR6 Silent p.G633G 0.31 TCGA-EB-A4P0-01 1 225702498 225702498 G A ENAH Missense_Mutation p.P340S 0.80 tolerated_low_confidence(0.29) probably_damaging(0.993) TCGA-EB-A4P0-01 1 230921727 230921727 G A CAPN9 Silent p.R494R 0.33 TCGA-EB-A4P0-01 1 24147024 24147024 G A HMGCL Silent p.P40P 0.57 TCGA-EB-A4P0-01 1 247875536 247875536 G A OR6F1 Silent p.I174I 0.57 TCGA-EB-A4P0-01 1 249151476 249151476 C T ZNF692 Silent p.R149R 0.61 TCGA-EB-A4P0-01 1 38226942 38226942 C A EPHA10 Intron 0.35 TCGA-EB-A4P0-01 1 38226943 38226943 C T EPHA10 Intron 0.34 TCGA-EB-A4P0-01 1 62235003 62235003 C T INADL Missense_Mutation p.L145F 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 1 78383291 78383291 T C NEXN Missense_Mutation p.V23A 0.21 deleterious(0) probably_damaging(0.967) TCGA-EB-A4P0-01 20 23424629 23424629 G A CSTL1 Missense_Mutation p.R93K 0.44 tolerated(1) benign(0.092) TCGA-EB-A4P0-01 20 31678525 31678525 C T BPIFB4 Silent p.L355L 0.52 TCGA-EB-A4P0-01 20 33513521 33513521 G A ACSS2 Missense_Mutation p.G573S 0.38 deleterious(0.01) probably_damaging(1) TCGA-EB-A4P0-01 20 3844977 3844978 - C MAVS Frame_Shift_Ins p.R236Qfs*35 0.33 TCGA-EB-A4P0-01 20 46331365 46331365 G T SULF2 Silent p.P155P 0.38 TCGA-EB-A4P0-01 20 46331366 46331366 G A SULF2 Missense_Mutation p.P155L 0.38 deleterious(0.03) possibly_damaging(0.794) TCGA-EB-A4P0-01 20 49626326 49626326 C T KCNG1 Missense_Mutation p.E184K 0.25 tolerated(0.27) benign(0.037) TCGA-EB-A4P0-01 20 5545717 5545717 C T GPCPD1 Silent p.V425V 0.16 TCGA-EB-A4P0-01 20 57429105 57429105 G A GNAS Missense_Mutation p.S262N 0.53 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A4P0-01 20 57766962 57766962 A G ZNF831 Silent p.Q296Q 0.31 TCGA-EB-A4P0-01 20 62292755 62292755 C T RTEL1 Silent p.A69A 0.36 TCGA-EB-A4P0-01 20 62292756 62292756 C T RTEL1 Missense_Mutation p.R70C 0.35 deleterious(0.04) benign(0.071) TCGA-EB-A4P0-01 22 36122480 36122480 C A APOL5 Missense_Mutation p.T122N 0.56 deleterious(0.02) benign(0.227) TCGA-EB-A4P0-01 22 50657146 50657146 C T TUBGCP6 Missense_Mutation p.E1603K 0.90 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 2 103274214 103274214 C T SLC9A2 Missense_Mutation p.P161S 0.55 tolerated(0.11) probably_damaging(0.927) TCGA-EB-A4P0-01 2 108608605 108608605 A T SLC5A7 Silent p.A74A 0.15 TCGA-EB-A4P0-01 2 113539266 113539266 C T IL1A Silent p.G78G 0.40 TCGA-EB-A4P0-01 2 118771535 118771535 G A CCDC93 Missense_Mutation p.P13S 0.44 tolerated_low_confidence(0.11) benign(0.009) TCGA-EB-A4P0-01 2 119751973 119751973 G A MARCO Silent p.Q480Q 0.35 TCGA-EB-A4P0-01 2 136511780 136511780 C T UBXN4 Missense_Mutation p.P89L 0.62 deleterious(0.03) probably_damaging(0.928) TCGA-EB-A4P0-01 2 149270450 149270450 C T MBD5 Silent p.I1475I 0.23 TCGA-EB-A4P0-01 2 168103766 168103766 G A XIRP2 Missense_Mutation p.G1955E 0.69 benign(0.045) TCGA-EB-A4P0-01 2 182360570 182360570 G A ITGA4 Silent p.T482T 0.31 TCGA-EB-A4P0-01 2 187709466 187709466 G A ZSWIM2 Silent p.F87F 0.38 TCGA-EB-A4P0-01 2 206659773 206659773 C T NRP2 Silent p.S929S 0.33 TCGA-EB-A4P0-01 2 219254675 219254675 C T SLC11A1 Missense_Mutation p.S293F 0.57 tolerated(1) benign(0.006) TCGA-EB-A4P0-01 2 234851231 234851231 C T TRPM8 Missense_Mutation p.L180F 0.23 tolerated(0.19) benign(0.001) TCGA-EB-A4P0-01 2 242396267 242396267 C T FARP2 Missense_Mutation p.S506F 0.49 deleterious(0.02) benign(0.019) TCGA-EB-A4P0-01 2 27375673 27375673 C T TCF23 Missense_Mutation p.P195S 0.22 tolerated(1) benign(0) TCGA-EB-A4P0-01 2 28627033 28627033 C T FOSL2 Silent p.I54I 0.60 TCGA-EB-A4P0-01 2 44104796 44104796 G A ABCG8 Missense_Mutation p.G618E 0.44 tolerated(0.1) probably_damaging(0.935) TCGA-EB-A4P0-01 2 63660937 63660937 G A WDPCP Missense_Mutation p.S256F 0.30 tolerated(0.06) probably_damaging(0.981) TCGA-EB-A4P0-01 2 63660941 63660941 T A WDPCP Missense_Mutation p.I255F 0.29 deleterious(0.01) possibly_damaging(0.905) TCGA-EB-A4P0-01 2 74653396 74653396 G A RTKN Missense_Mutation p.R556C 0.53 deleterious_low_confidence(0) benign(0.28) TCGA-EB-A4P0-01 2 74686626 74686626 C T WBP1 Intron 0.91 TCGA-EB-A4P0-01 2 80101286 80101286 T G CTNNA2 Missense_Mutation p.S224A 0.26 tolerated(0.06) benign(0.049) TCGA-EB-A4P0-01 2 88425707 88425707 C T FABP1 Silent p.G76G 0.56 TCGA-EB-A4P0-01 2 99012480 99012480 C A CNGA3 Silent p.R283R 0.30 TCGA-EB-A4P0-01 3 125876238 125876238 G A ALDH1L1 Missense_Mutation p.T169I 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A4P0-01 3 126734107 126734107 G A PLXNA1 Silent p.L986L 0.34 TCGA-EB-A4P0-01 3 128292237 128292237 G A C3orf27 Silent p.T112T 0.35 TCGA-EB-A4P0-01 3 128707715 128707715 G A KIAA1257 Silent p.H103H 0.57 TCGA-EB-A4P0-01 3 131261439 131261439 C T CPNE4 Missense_Mutation p.D501N 0.24 deleterious(0) probably_damaging(0.989) TCGA-EB-A4P0-01 3 138289886 138289886 G A CEP70 Nonsense_Mutation p.Q92* 0.22 TCGA-EB-A4P0-01 3 16419257 16419257 G A RFTN1 Missense_Mutation p.P265L 0.67 tolerated(0.5) benign(0.004) TCGA-EB-A4P0-01 3 190967844 190967844 A G OSTN Silent p.P112P 0.23 TCGA-EB-A4P0-01 3 21467127 21467127 C T ZNF385D Missense_Mutation p.G237R 0.39 tolerated(0.11) probably_damaging(0.996) TCGA-EB-A4P0-01 3 31705658 31705658 C T OSBPL10 Silent p.K721K 0.62 TCGA-EB-A4P0-01 3 38061817 38061817 C T PLCD1 Missense_Mutation p.A42T 0.32 tolerated(0.34) benign(0.002) TCGA-EB-A4P0-01 3 45152286 45152286 G A CDCP1 Silent p.L235L 0.50 TCGA-EB-A4P0-01 3 46306885 46306885 C T CCR3 Missense_Mutation p.S100L 0.24 deleterious(0) probably_damaging(0.983) TCGA-EB-A4P0-01 3 48265928 48265928 G A CAMP Missense_Mutation p.D99N 0.22 deleterious(0.01) benign(0.037) TCGA-EB-A4P0-01 3 49405907 49405907 G A RHOA Silent p.T77T 0.57 TCGA-EB-A4P0-01 3 49568701 49568701 G A DAG1 Missense_Mutation p.E253K 0.51 tolerated(0.11) probably_damaging(0.994) TCGA-EB-A4P0-01 3 52256222 52256222 G A TLR9 Missense_Mutation p.R858W 0.32 deleterious(0.02) benign(0.014) TCGA-EB-A4P0-01 3 52457363 52457363 A G PHF7 3'UTR 0.25 TCGA-EB-A4P0-01 3 7503367 7503367 T C GRM7 Silent p.G491G 0.60 TCGA-EB-A4P0-01 3 8661680 8661680 G A SSUH2 Silent p.I334I 0.61 TCGA-EB-A4P0-01 3 93692606 93692606 G A PROS1 5'UTR 0.43 TCGA-EB-A4P0-01 4 110442710 110442710 G A SEC24B Silent p.Q812Q 0.62 TCGA-EB-A4P0-01 4 151231444 151231444 T C LRBA Missense_Mutation p.N2607D 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A4P0-01 4 153573855 153573855 G A TMEM154 Missense_Mutation p.L97F 0.47 tolerated(0.84) benign(0.001) TCGA-EB-A4P0-01 4 153864232 153864232 C T FHDC1 Missense_Mutation p.S8F 0.45 deleterious(0) possibly_damaging(0.879) TCGA-EB-A4P0-01 4 164393288 164393288 G A TKTL2 Silent p.V533V 0.29 TCGA-EB-A4P0-01 4 2306448 2306448 G A ZFYVE28 Missense_Mutation p.P540L 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-EB-A4P0-01 4 3231699 3231699 C T HTT Missense_Mutation p.P2732L 0.56 benign(0.291) TCGA-EB-A4P0-01 4 41605892 41605892 G A LIMCH1 Silent p.K115K 0.43 TCGA-EB-A4P0-01 4 44709886 44709886 C A GNPDA2 Nonsense_Mutation p.E218* 0.31 TCGA-EB-A4P0-01 4 57873154 57873154 G A POLR2B Missense_Mutation p.A464T 0.21 tolerated(0.4) possibly_damaging(0.833) TCGA-EB-A4P0-01 4 72313378 72313378 C T SLC4A4 Silent p.L327L 0.56 TCGA-EB-A4P0-01 4 85530645 85530645 C G CDS1 Missense_Mutation p.I103M 0.17 deleterious(0.03) benign(0.171) TCGA-EB-A4P0-01 5 110407633 110407633 G A TSLP Silent p.R15R 0.49 TCGA-EB-A4P0-01 5 114462430 114462430 T C TRIM36 Missense_Mutation p.N653D 0.63 tolerated(0.6) benign(0.079) TCGA-EB-A4P0-01 5 13916475 13916475 G A DNAH5 Silent p.I393I 0.50 TCGA-EB-A4P0-01 5 140181539 140181539 G A PCDHA3 Missense_Mutation p.E253K 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A4P0-01 5 140208719 140208719 C T PCDHA6 Missense_Mutation p.P348L 0.20 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-EB-A4P0-01 5 140793017 140793017 G T PCDHGA10 Missense_Mutation p.G92V 0.22 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-EB-A4P0-01 5 143545126 143545126 G A YIPF5 Silent p.V51V 0.28 TCGA-EB-A4P0-01 5 178408714 178408714 C T GRM6 Missense_Mutation p.A860T 0.57 tolerated(0.09) benign(0.007) TCGA-EB-A4P0-01 5 179147437 179147437 C T CANX Missense_Mutation p.P353L 0.58 deleterious(0.01) probably_damaging(1) TCGA-EB-A4P0-01 5 35793339 35793339 C T SPEF2 Missense_Mutation p.P1545S 0.48 deleterious(0) probably_damaging(0.997) TCGA-EB-A4P0-01 5 50685762 50685762 A C ISL1 Missense_Mutation p.K254T 0.32 tolerated(0.15) benign(0.015) TCGA-EB-A4P0-01 5 55168220 55168220 C T IL31RA Missense_Mutation p.A132V 0.23 deleterious(0.02) possibly_damaging(0.657) TCGA-EB-A4P0-01 5 70308713 70308713 C A NAIP Missense_Mutation p.E10D 0.78 tolerated(0.22) benign(0.009) TCGA-EB-A4P0-01 5 70308714 70308714 T A NAIP Missense_Mutation p.E10V 0.77 deleterious(0.02) possibly_damaging(0.572) TCGA-EB-A4P0-01 6 128330388 128330388 C T PTPRK Silent p.V740V 0.33 TCGA-EB-A4P0-01 6 133014418 133014418 G A VNN1 Missense_Mutation p.P191S 0.55 deleterious(0.04) probably_damaging(0.989) TCGA-EB-A4P0-01 6 155450656 155450656 G C TIAM2 Missense_Mutation p.G100A 0.76 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-EB-A4P0-01 6 158485773 158485773 G A SYNJ2 Silent p.G450G 0.27 TCGA-EB-A4P0-01 6 26246906 26246906 G A HIST1H4G 3'UTR 0.25 TCGA-EB-A4P0-01 6 29395223 29395223 C T OR11A1 Missense_Mutation p.A66T 0.45 deleterious(0.01) benign(0.104) TCGA-EB-A4P0-01 6 35773622 35773622 G A LHFPL5 Missense_Mutation p.A59T 0.53 tolerated(0.33) possibly_damaging(0.832) TCGA-EB-A4P0-01 6 35923264 35923264 C T SLC26A8 Missense_Mutation p.D633N 0.25 tolerated(0.12) benign(0.091) TCGA-EB-A4P0-01 6 53986293 53986293 C T MLIP Missense_Mutation p.P38S 0.48 deleterious(0) probably_damaging(0.998) TCGA-EB-A4P0-01 6 55198719 55198719 G A GFRAL Missense_Mutation p.G98E 0.48 tolerated(0.07) possibly_damaging(0.882) TCGA-EB-A4P0-01 6 55620477 55620477 G A BMP5 Missense_Mutation p.H407Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A4P0-01 6 56765285 56765285 G A DST Silent p.I117I 0.36 TCGA-EB-A4P0-01 6 70944551 70944551 C T COL9A1 Silent p.R735R 0.24 TCGA-EB-A4P0-01 6 75890845 75890845 A C COL12A1 Missense_Mutation p.N658K 0.28 benign(0.01) TCGA-EB-A4P0-01 7 103126682 103126682 C T RELN Silent p.R3315R 0.42 TCGA-EB-A4P0-01 7 104715152 104715152 C T KMT2E Nonsense_Mutation p.Q207* 0.44 TCGA-EB-A4P0-01 7 136587937 136587937 G A CHRM2 Intron 0.39 TCGA-EB-A4P0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-EB-A4P0-01 7 150936810 150936810 A G SMARCD3 Missense_Mutation p.I399T 0.29 deleterious(0) probably_damaging(0.996) TCGA-EB-A4P0-01 7 157364156 157364156 G A PTPRN2 Missense_Mutation p.S938F 0.33 deleterious(0) probably_damaging(0.99) TCGA-EB-A4P0-01 7 38530661 38530661 G A AMPH Missense_Mutation p.P129S 0.53 deleterious(0) probably_damaging(1) TCGA-EB-A4P0-01 7 45223063 45223063 C T RAMP3 3'UTR 0.55 TCGA-EB-A4P0-01 7 45223064 45223064 C T RAMP3 3'UTR 0.53 TCGA-EB-A4P0-01 7 55872986 55872986 C T SEPT14 Missense_Mutation p.E362K 0.47 tolerated(0.05) benign(0.043) TCGA-EB-A4P0-01 7 98552848 98552848 C T TRRAP Missense_Mutation p.T1946I 0.38 probably_damaging(0.989) TCGA-EB-A4P0-01 7 98552849 98552849 C T TRRAP Silent p.T1946T 0.37 TCGA-EB-A4P0-01 8 100568857 100568857 C T VPS13B Missense_Mutation p.A1667V 0.29 deleterious(0) probably_damaging(0.935) TCGA-EB-A4P0-01 8 108334251 108334251 T G ANGPT1 Silent p.T227T 0.49 TCGA-EB-A4P0-01 8 110455210 110455210 C T PKHD1L1 Missense_Mutation p.H1477Y 0.43 tolerated(1) benign(0) TCGA-EB-A4P0-01 8 124710786 124710786 A G ANXA13 Missense_Mutation p.V108A 0.18 tolerated(0.1) benign(0.274) TCGA-EB-A4P0-01 8 128750683 128750683 C T MYC Missense_Mutation p.P74S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A4P0-01 8 139603675 139603675 C T COL22A1 Missense_Mutation p.G1562E 0.43 unknown(0) TCGA-EB-A4P0-01 8 143784546 143784546 C T LY6K Silent p.C85C 0.29 TCGA-EB-A4P0-01 8 23167379 23167379 G A LOXL2 Missense_Mutation p.T561I 0.31 tolerated(0.05) possibly_damaging(0.853) TCGA-EB-A4P0-01 8 3081376 3081376 C T CSMD1 Silent p.G1453G 0.42 TCGA-EB-A4P0-01 8 39634676 39634676 G A ADAM2 Missense_Mutation p.P299L 0.49 deleterious(0) probably_damaging(0.961) TCGA-EB-A4P0-01 8 55538903 55538903 C T RP1 Missense_Mutation p.H821Y 0.41 tolerated(0.08) benign(0.097) TCGA-EB-A4P0-01 8 63976876 63976876 C T TTPA Splice_Site p.X185_splice 0.56 TCGA-EB-A4P0-01 8 74204012 74204012 A T RPL7 Missense_Mutation p.W142R 0.51 deleterious(0.03) benign(0.046) TCGA-EB-A4P0-01 8 90982597 90982597 G A NBN Silent p.L297L 0.57 TCGA-EB-A4P0-01 9 102747302 102747302 G C ERP44 Missense_Mutation p.L356V 0.75 deleterious(0) probably_damaging(0.927) TCGA-EB-A4P0-01 9 131329157 131329157 C T SPTAN1 Silent p.F46F 0.57 TCGA-EB-A4P0-01 9 138416998 138416998 G A LCN1 Missense_Mutation p.D176N 0.90 tolerated(0.7) benign(0.018) TCGA-EB-A4P0-01 9 138837772 138837772 G A UBAC1 Missense_Mutation p.P206S 0.75 tolerated(0.36) possibly_damaging(0.897) TCGA-EB-A4P0-01 X 117880973 117880973 T G IL13RA1 Missense_Mutation p.C95W 0.88 deleterious(0.01) probably_damaging(0.933) TCGA-EB-A4P0-01 X 140995321 140995321 C T MAGEC1 Missense_Mutation p.P711S 0.91 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EB-A4P0-01 X 141291192 141291192 G A MAGEC2 Silent p.G194G 0.87 TCGA-EB-A4P0-01 X 149639299 149639299 C T MAMLD1 Missense_Mutation p.P460L 0.94 deleterious(0) possibly_damaging(0.858) TCGA-EB-A4P0-01 X 52842245 52842245 G A XAGE5 Missense_Mutation p.D52N 0.86 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A4P0-01 X 67940184 67940184 C T STARD8 Silent p.I656I 0.81 TCGA-EB-A4XL-01 10 102676482 102676482 G A FAM178A Missense_Mutation p.A114T 0.22 tolerated(0.06) benign(0.011) TCGA-EB-A4XL-01 10 102789760 102789760 G A PDZD7 Missense_Mutation p.P73S 0.24 deleterious(0) probably_damaging(0.931) TCGA-EB-A4XL-01 10 103906742 103906742 C T PPRC1 Silent p.I1331I 0.21 TCGA-EB-A4XL-01 10 107022245 107022245 C T SORCS3 Silent p.V1200V 0.59 TCGA-EB-A4XL-01 10 117228699 117228699 G A ATRNL1 Missense_Mutation p.E1172K 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-EB-A4XL-01 10 118314974 118314974 A T PNLIP Nonsense_Mutation p.K256* 0.47 TCGA-EB-A4XL-01 10 123845760 123845760 G A TACC2 Missense_Mutation p.E1249K 0.26 benign(0.026) TCGA-EB-A4XL-01 10 125506316 125506316 C T CPXM2 Silent p.L745L 0.55 TCGA-EB-A4XL-01 10 125506454 125506454 G A CPXM2 Silent p.S699S 0.22 TCGA-EB-A4XL-01 10 30317710 30317710 C T KIAA1462 Missense_Mutation p.S456N 0.43 tolerated(0.22) benign(0.23) TCGA-EB-A4XL-01 10 30336657 30336657 C T KIAA1462 Missense_Mutation p.G29R 0.31 tolerated(0.15) possibly_damaging(0.713) TCGA-EB-A4XL-01 10 34671594 34671594 C T PARD3 Missense_Mutation p.A425T 0.12 tolerated(0.41) benign(0.001) TCGA-EB-A4XL-01 10 47087529 47087529 A C NPY4R Missense_Mutation p.H249P 0.10 tolerated(0.09) benign(0) TCGA-EB-A4XL-01 10 48389662 48389662 C T RBP3 Missense_Mutation p.E406K 0.48 tolerated(0.13) benign(0.008) TCGA-EB-A4XL-01 10 49400749 49400749 C T FRMPD2 Missense_Mutation p.G715R 0.29 tolerated(0.7) benign(0.006) TCGA-EB-A4XL-01 10 50121757 50121757 C T LRRC18 Silent p.E148E 0.41 TCGA-EB-A4XL-01 10 5541490 5541490 A C CALML5 5'UTR 0.29 TCGA-EB-A4XL-01 10 64159620 64159620 C T ZNF365 Intron 0.38 TCGA-EB-A4XL-01 10 72285869 72285882 CAAGGTGGCCCCTG - PALD1 Frame_Shift_Del p.K55Cfs*14 0.33 TCGA-EB-A4XL-01 10 73330618 73330618 G A CDH23 Missense_Mutation p.M232I 0.16 tolerated(0.33) benign(0.031) TCGA-EB-A4XL-01 10 73330619 73330619 G A CDH23 Missense_Mutation p.D233N 0.16 tolerated(0.38) benign(0.057) TCGA-EB-A4XL-01 10 7682777 7682777 C T ITIH5 Missense_Mutation p.R114K 0.25 tolerated(1) benign(0.008) TCGA-EB-A4XL-01 10 96702146 96702146 C T CYP2C9 Intron 0.17 TCGA-EB-A4XL-01 10 97916065 97916065 T A ZNF518A RNA 0.50 TCGA-EB-A4XL-01 10 97918389 97918389 C T ZNF518A RNA 0.15 TCGA-EB-A4XL-01 10 98376468 98376468 C T PIK3AP1 Missense_Mutation p.E648K 0.27 deleterious(0) probably_damaging(0.994) TCGA-EB-A4XL-01 10 99695952 99695952 G A CRTAC1 Silent p.F132F 0.45 TCGA-EB-A4XL-01 11 101323826 101323826 C T TRPC6 Missense_Mutation p.E886K 0.72 deleterious(0.02) possibly_damaging(0.826) TCGA-EB-A4XL-01 11 108188196 108188196 C T ATM Missense_Mutation p.H2099Y 0.56 tolerated(0.27) benign(0.005) TCGA-EB-A4XL-01 11 117374561 117374561 C T DSCAML1 Silent p.K846K 0.76 TCGA-EB-A4XL-01 11 118390478 118390478 C T KMT2A Silent p.H3764H 0.06 TCGA-EB-A4XL-01 11 128843815 128843815 T A ARHGAP32 Intron 0.27 TCGA-EB-A4XL-01 11 128843835 128843835 T G ARHGAP32 Intron 0.30 TCGA-EB-A4XL-01 11 14300838 14300838 G A RRAS2 3'UTR 0.43 TCGA-EB-A4XL-01 11 19204126 19204126 G A CSRP3 3'UTR 0.45 TCGA-EB-A4XL-01 11 4127300 4127300 C T RRM1 Nonsense_Mutation p.Q45* 0.35 TCGA-EB-A4XL-01 11 43908189 43908189 C T ALKBH3 Silent p.P84P 0.51 TCGA-EB-A4XL-01 11 4566673 4566673 G A OR52M1 Missense_Mutation p.G85R 0.53 deleterious(0.01) benign(0.258) TCGA-EB-A4XL-01 11 47176775 47176775 T A C11orf49 Missense_Mutation p.D138E 0.39 deleterious(0.03) probably_damaging(0.962) TCGA-EB-A4XL-01 11 4791058 4791058 G A OR51F1 Silent p.S30S 0.23 TCGA-EB-A4XL-01 11 48510706 48510706 A T OR4A47 Missense_Mutation p.Y121F 0.55 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-EB-A4XL-01 11 5079916 5079916 C T OR52E2 Missense_Mutation p.M314I 0.35 tolerated_low_confidence(0.63) benign(0) TCGA-EB-A4XL-01 11 5080066 5080066 G C OR52E2 Silent p.R264R 0.41 TCGA-EB-A4XL-01 11 55038355 55038355 C T TRIM48 3'UTR 0.23 TCGA-EB-A4XL-01 11 55681990 55681990 C T OR5W2 Missense_Mutation p.M23I 0.40 tolerated(0.23) benign(0.002) TCGA-EB-A4XL-01 11 55682013 55682013 C T OR5W2 Missense_Mutation p.G16R 0.29 deleterious(0) possibly_damaging(0.89) TCGA-EB-A4XL-01 11 55861122 55861122 C T OR8I2 Silent p.F113F 0.43 TCGA-EB-A4XL-01 11 55861700 55861700 G A OR8I2 Missense_Mutation p.R306K 0.24 tolerated(1) benign(0.002) TCGA-EB-A4XL-01 11 56086283 56086283 C T OR8K3 Silent p.S167S 0.46 TCGA-EB-A4XL-01 11 59609928 59609928 G A GIF Missense_Mutation p.P167S 0.37 tolerated(0.08) benign(0.128) TCGA-EB-A4XL-01 11 607077 607077 T A PHRF1 Missense_Mutation p.F540I 0.06 tolerated(0.08) benign(0.343) TCGA-EB-A4XL-01 11 61511464 61511464 G A DAGLA Missense_Mutation p.E878K 0.35 tolerated_low_confidence(0.28) benign(0.028) TCGA-EB-A4XL-01 11 62567807 62567807 G A NXF1 Intron 0.38 TCGA-EB-A4XL-01 11 65266485 65266485 C T MALAT1 RNA 0.35 TCGA-EB-A4XL-01 11 66333814 66333814 G A CTSF Silent p.A223A 0.41 TCGA-EB-A4XL-01 11 67059570 67059570 C T ANKRD13D Missense_Mutation p.P217L 0.35 deleterious(0.02) benign(0.2) TCGA-EB-A4XL-01 11 67786664 67786664 G A ALDH3B1 Silent p.S139S 0.38 TCGA-EB-A4XL-01 11 74800495 74800495 G A OR2AT4 Silent p.S88S 0.40 TCGA-EB-A4XL-01 11 92532058 92532058 G A FAT3 Missense_Mutation p.G1960E 0.58 probably_damaging(1) TCGA-EB-A4XL-01 12 10603647 10603647 C T KLRC1 Missense_Mutation p.E37K 0.43 deleterious(0.02) benign(0.333) TCGA-EB-A4XL-01 12 106734677 106734677 G A TCP11L2 Missense_Mutation p.E406K 0.42 tolerated(0.13) possibly_damaging(0.895) TCGA-EB-A4XL-01 12 109286781 109286781 T A DAO Missense_Mutation p.F159Y 0.45 deleterious(0) possibly_damaging(0.864) TCGA-EB-A4XL-01 12 110930957 110930957 G A VPS29 Missense_Mutation p.P96L 0.50 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 12 111085685 111085685 C T TCTN1 Silent p.F589F 0.28 TCGA-EB-A4XL-01 12 111748330 111748330 G A CUX2 Missense_Mutation p.G582R 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 12 111748331 111748331 G A CUX2 Missense_Mutation p.G582E 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 12 113545893 113545893 G A RASAL1 Silent p.A504A 0.54 TCGA-EB-A4XL-01 12 117660595 117660595 C T NOS1 Silent p.E1334E 0.32 TCGA-EB-A4XL-01 12 120536876 120536876 G A RAB35 Missense_Mutation p.H104Y 0.46 tolerated(0.07) benign(0.02) TCGA-EB-A4XL-01 12 120998648 120998648 C T RNF10 Missense_Mutation p.P363S 0.40 tolerated(0.18) benign(0.047) TCGA-EB-A4XL-01 12 126138441 126138441 C T TMEM132B Missense_Mutation p.R808W 0.48 deleterious(0.02) probably_damaging(0.976) TCGA-EB-A4XL-01 12 132529956 132529956 C T EP400 Missense_Mutation p.R2293C 0.49 unknown(0) TCGA-EB-A4XL-01 12 14767830 14767830 C T GUCY2C Silent p.Q1006Q 0.45 TCGA-EB-A4XL-01 12 18891381 18891381 C T CAPZA3 Missense_Mutation p.S60F 0.40 tolerated(1) benign(0) TCGA-EB-A4XL-01 12 21054378 21054378 G A SLCO1B3 Silent p.R614R 0.36 TCGA-EB-A4XL-01 12 284114 284114 C T IQSEC3 Missense_Mutation p.P1155L 0.57 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EB-A4XL-01 12 41831708 41831708 G A PDZRN4 Intron 0.29 TCGA-EB-A4XL-01 12 43770434 43770434 C T ADAMTS20 Missense_Mutation p.G1673E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 12 44782145 44782145 G A TMEM117 Nonsense_Mutation p.W412* 0.23 TCGA-EB-A4XL-01 12 47186842 47186842 C T SLC38A4 Missense_Mutation p.E5K 0.42 deleterious(0.03) possibly_damaging(0.715) TCGA-EB-A4XL-01 12 52652164 52652164 G A KRT121P RNA 0.44 TCGA-EB-A4XL-01 12 53096980 53096980 C A KRT77 Missense_Mutation p.S80I 0.38 tolerated(0.11) probably_damaging(0.979) TCGA-EB-A4XL-01 12 57081927 57081927 G A PTGES3 5'UTR 0.42 TCGA-EB-A4XL-01 12 6881968 6881968 C T LAG3 5'UTR 0.26 TCGA-EB-A4XL-01 12 7639169 7639169 A C CD163 Missense_Mutation p.I795S 0.43 deleterious(0) possibly_damaging(0.891) TCGA-EB-A4XL-01 12 8051572 8051572 C T NANOGP1 RNA 0.25 TCGA-EB-A4XL-01 12 81102635 81102635 G A MYF6 Missense_Mutation p.D209N 0.35 deleterious(0) benign(0.048) TCGA-EB-A4XL-01 12 8374351 8374351 C T FAM90A1 3'UTR 0.46 TCGA-EB-A4XL-01 12 86373909 86373909 G A MGAT4C Missense_Mutation p.R199C 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 12 9345151 9345151 C T PZP Missense_Mutation p.R480K 0.34 tolerated(0.89) benign(0.013) TCGA-EB-A4XL-01 12 97093816 97093816 G A C12orf55 Missense_Mutation p.G2140E 0.38 deleterious(0) benign(0.002) TCGA-EB-A4XL-01 13 100523249 100523249 C T CLYBL Missense_Mutation p.S287F 0.60 deleterious(0) possibly_damaging(0.853) TCGA-EB-A4XL-01 13 103701646 103701646 G A SLC10A2 Silent p.F304F 0.40 TCGA-EB-A4XL-01 13 110864021 110864021 C T COL4A1 Splice_Site p.X148_splice 0.41 TCGA-EB-A4XL-01 13 23778013 23778013 G A SGCG Silent p.V60V 0.25 TCGA-EB-A4XL-01 13 23911985 23911985 C T SACS Silent p.K2010K 0.42 TCGA-EB-A4XL-01 13 40297477 40297477 C G COG6 Missense_Mutation p.A531G 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-EB-A4XL-01 13 64321086 64321086 T G AL445989.1 Silent p.G51G 0.45 TCGA-EB-A4XL-01 13 84455786 84455786 G A SLITRK1 5'UTR 0.29 TCGA-EB-A4XL-01 14 101512845 101512845 C T MIR487B RNA 0.42 TCGA-EB-A4XL-01 14 104026328 104026328 C T BAG5 Missense_Mutation p.D433N 0.41 deleterious(0) probably_damaging(0.997) TCGA-EB-A4XL-01 14 105420946 105420946 G A AHNAK2 Missense_Mutation p.S281L 0.32 benign(0.214) TCGA-EB-A4XL-01 14 106667663 106667663 G A IGHV3-20 Missense_Mutation p.S90F 0.37 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-EB-A4XL-01 14 106725254 106725254 G A IGHV3-23 Silent p.L100L 0.23 TCGA-EB-A4XL-01 14 106733415 106733415 C T IGHV1-24 Missense_Mutation p.G27E 0.40 deleterious(0.01) possibly_damaging(0.905) TCGA-EB-A4XL-01 14 106733416 106733416 C T IGHV1-24 Missense_Mutation p.G27R 0.39 deleterious(0) probably_damaging(0.993) TCGA-EB-A4XL-01 14 22090064 22090064 G A TRAV1-1 Missense_Mutation p.G3E 0.32 tolerated(0.07) benign(0.003) TCGA-EB-A4XL-01 14 23006617 23006617 T G TRAJ7 Missense_Mutation p.V18G 0.34 unknown(0) TCGA-EB-A4XL-01 14 23609808 23609808 C T SLC7A8 Silent p.K220K 0.40 TCGA-EB-A4XL-01 14 37145457 37145457 C T PAX9 Missense_Mutation p.P276S 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.478) TCGA-EB-A4XL-01 14 42355855 42355855 T C LRFN5 Silent p.F9F 0.28 TCGA-EB-A4XL-01 14 52520943 52520943 G A NID2 Silent p.S288S 0.36 TCGA-EB-A4XL-01 14 63316496 63316496 G A KCNH5 Missense_Mutation p.H482Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-EB-A4XL-01 14 63316497 63316497 G A KCNH5 Silent p.Y481Y 0.33 TCGA-EB-A4XL-01 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.37 TCGA-EB-A4XL-01 14 67878763 67878763 A C PLEK2 Missense_Mutation p.V5G 0.21 tolerated(0.38) possibly_damaging(0.608) TCGA-EB-A4XL-01 14 69256541 69256541 G A ZFP36L1 Silent p.T242T 0.26 TCGA-EB-A4XL-01 14 70926189 70926189 C T ADAM21 Missense_Mutation p.S658F 0.36 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A4XL-01 14 73659564 73659564 C T PSEN1 Missense_Mutation p.S254L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 14 75551185 75551185 G A NEK9 3'UTR 0.34 TCGA-EB-A4XL-01 14 90755032 90755032 G A NRDE2 Missense_Mutation p.P896L 0.39 tolerated(0.06) benign(0.006) TCGA-EB-A4XL-01 14 92088080 92088080 C T CATSPERB Nonsense_Mutation p.W711* 0.34 TCGA-EB-A4XL-01 14 94048650 94048650 G A UNC79 Silent p.G744G 0.21 TCGA-EB-A4XL-01 14 94053106 94053106 G A UNC79 Missense_Mutation p.E785K 0.46 deleterious(0.05) benign(0.084) TCGA-EB-A4XL-01 15 101592063 101592063 C A LRRK1 Missense_Mutation p.T1196K 0.45 tolerated(0.49) benign(0.166) TCGA-EB-A4XL-01 15 20488780 20488780 G A CHEK2P2 RNA 0.09 TCGA-EB-A4XL-01 15 22332530 22332530 G A RP11-69H14.6 RNA 0.14 TCGA-EB-A4XL-01 15 24922389 24922389 C T NPAP1 Missense_Mutation p.P459S 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A4XL-01 15 25472080 25472080 G A SNORD115-33 5'Flank 0.42 TCGA-EB-A4XL-01 15 42173353 42173353 G A SPTBN5 Missense_Mutation p.P846L 0.07 benign(0.054) TCGA-EB-A4XL-01 15 45847976 45847976 G A RP11-96O20.2 5'Flank 0.31 TCGA-EB-A4XL-01 15 48577374 48577374 G T SLC12A1 Nonsense_Mutation p.E853* 0.40 TCGA-EB-A4XL-01 15 55838811 55838811 G A PYGO1 Missense_Mutation p.P224S 0.45 tolerated(0.09) benign(0.009) TCGA-EB-A4XL-01 15 57918084 57918084 C T GCOM1 Silent p.G173G 0.29 TCGA-EB-A4XL-01 15 74751055 74751055 G A UBL7 Nonsense_Mutation p.Q52* 0.41 TCGA-EB-A4XL-01 15 77346606 77346606 C A TSPAN3 Missense_Mutation p.D116Y 0.33 deleterious(0.01) possibly_damaging(0.653) TCGA-EB-A4XL-01 15 78566696 78566696 C T DNAJA4 Silent p.D221D 0.32 TCGA-EB-A4XL-01 15 87066160 87066160 G A AGBL1 Missense_Mutation p.R846Q 0.47 deleterious(0.02) benign(0.418) TCGA-EB-A4XL-01 15 95013586 95013586 C T MCTP2 Silent p.F795F 0.45 TCGA-EB-A4XL-01 16 21065780 21065780 G A DNAH3 Nonsense_Mutation p.R1334* 0.20 TCGA-EB-A4XL-01 16 2150220 2150220 G A PKD1 Missense_Mutation p.S3220L 0.14 probably_damaging(0.999) TCGA-EB-A4XL-01 16 2358623 2358623 G A ABCA3 Silent p.A371A 0.36 TCGA-EB-A4XL-01 16 2819159 2819159 C T SRRM2 Missense_Mutation p.S2632F 0.42 probably_damaging(0.962) TCGA-EB-A4XL-01 16 3406253 3406253 C T OR2C1 Missense_Mutation p.L105F 0.38 deleterious(0.03) benign(0.059) TCGA-EB-A4XL-01 16 3486500 3486500 G A ZNF597 Missense_Mutation p.T400I 0.39 tolerated(0.06) probably_damaging(0.968) TCGA-EB-A4XL-01 16 48337165 48337165 G A LONP2 Missense_Mutation p.G582R 0.17 tolerated(0.1) benign(0.209) TCGA-EB-A4XL-01 16 55530916 55530916 G A MMP2 Silent p.P517P 0.23 TCGA-EB-A4XL-01 16 56947335 56947335 C T SLC12A3 3'UTR 0.45 TCGA-EB-A4XL-01 16 57687991 57687991 G C GPR56 Missense_Mutation p.W238C 0.22 deleterious(0) probably_damaging(0.976) TCGA-EB-A4XL-01 16 68373835 68373835 C T PRMT7 Silent p.A297A 0.57 TCGA-EB-A4XL-01 16 68405226 68405226 C T SMPD3 Missense_Mutation p.G287R 0.26 deleterious(0) possibly_damaging(0.573) TCGA-EB-A4XL-01 16 7760684 7760684 C T RBFOX1 Silent p.L398L 0.20 TCGA-EB-A4XL-01 16 8866748 8866748 C T ABAT Missense_Mutation p.R310W 0.43 deleterious(0.01) benign(0.036) TCGA-EB-A4XL-01 16 9857944 9857944 C T GRIN2A Missense_Mutation p.D1153N 0.40 deleterious(0.02) possibly_damaging(0.606) TCGA-EB-A4XL-01 17 10312881 10312881 C T MYH8 Missense_Mutation p.E538K 0.44 deleterious(0) probably_damaging(0.996) TCGA-EB-A4XL-01 17 10357901 10357901 T C MYH4 Missense_Mutation p.K888E 0.43 deleterious(0) probably_damaging(0.995) TCGA-EB-A4XL-01 17 10366710 10366710 G A MYH4 Silent p.F250F 0.41 TCGA-EB-A4XL-01 17 10408197 10408197 C T MYH1 Missense_Mutation p.R874K 0.41 tolerated(0.13) benign(0.005) TCGA-EB-A4XL-01 17 11701013 11701013 G A DNAH9 Missense_Mutation p.E2775K 0.33 benign(0.028) TCGA-EB-A4XL-01 17 11725780 11725780 G A DNAH9 Missense_Mutation p.G2959E 0.37 probably_damaging(0.997) TCGA-EB-A4XL-01 17 18168060 18168060 G A MIEF2 Silent p.E460E 0.39 TCGA-EB-A4XL-01 17 19476152 19476152 C T SLC47A1 Silent p.L488L 0.45 TCGA-EB-A4XL-01 17 20406444 20406444 C T RP11-434D2.7 3'Flank 0.21 TCGA-EB-A4XL-01 17 21215468 21215468 C T MAP2K3 Silent p.I263I 0.21 TCGA-EB-A4XL-01 17 25924423 25924423 C T KSR1 Missense_Mutation p.P340S 0.40 tolerated(0.39) possibly_damaging(0.821) TCGA-EB-A4XL-01 17 25924424 25924424 C T KSR1 Missense_Mutation p.P340L 0.40 deleterious(0.05) benign(0.071) TCGA-EB-A4XL-01 17 3324783 3324783 G A OR3A3 Missense_Mutation p.G308S 0.47 tolerated(0.08) benign(0.022) TCGA-EB-A4XL-01 17 3806905 3806905 G A P2RX1 Missense_Mutation p.A182V 0.32 deleterious(0.01) possibly_damaging(0.768) TCGA-EB-A4XL-01 17 38643425 38643425 C T TNS4 Missense_Mutation p.G384E 0.39 tolerated(0.11) benign(0.169) TCGA-EB-A4XL-01 17 4536554 4536554 G A ALOX15 Silent p.F435F 0.29 TCGA-EB-A4XL-01 17 4577948 4577948 C T PELP1 Missense_Mutation p.G480E 0.37 probably_damaging(0.935) TCGA-EB-A4XL-01 17 4577949 4577949 C T PELP1 Missense_Mutation p.G480R 0.38 probably_damaging(0.972) TCGA-EB-A4XL-01 17 48355965 48355965 G A TMEM92 Silent p.E48E 0.49 TCGA-EB-A4XL-01 17 48605560 48605560 C T MYCBPAP Missense_Mutation p.S822F 0.24 deleterious(0) probably_damaging(0.989) TCGA-EB-A4XL-01 17 48605561 48605561 C T MYCBPAP Silent p.S822S 0.24 TCGA-EB-A4XL-01 17 5462939 5462939 G A NLRP1 Silent p.D359D 0.36 TCGA-EB-A4XL-01 17 56565652 56565652 G A HSF5 5'UTR 0.56 TCGA-EB-A4XL-01 17 66352821 66352821 G A ARSG Missense_Mutation p.D194N 0.33 tolerated(0.33) benign(0.03) TCGA-EB-A4XL-01 17 67081799 67081799 C T ABCA6 Missense_Mutation p.M1332I 0.42 tolerated(0.05) benign(0.057) TCGA-EB-A4XL-01 17 6945477 6945477 G A SLC16A11 Silent p.L342L 0.36 TCGA-EB-A4XL-01 17 72878688 72878688 G A FADS6 Silent p.L170L 0.40 TCGA-EB-A4XL-01 17 72916370 72916370 G A USH1G Silent p.S187S 0.42 TCGA-EB-A4XL-01 17 72959133 72959133 G A HID1 Missense_Mutation p.S144F 0.40 deleterious(0.01) possibly_damaging(0.595) TCGA-EB-A4XL-01 17 76046879 76046879 C T TNRC6C Missense_Mutation p.S579F 0.39 deleterious(0) possibly_damaging(0.694) TCGA-EB-A4XL-01 17 76853695 76853695 G A TIMP2 Missense_Mutation p.T125I 0.43 tolerated(0.06) benign(0.4) TCGA-EB-A4XL-01 17 80040803 80040803 G A FASN Silent p.S1918S 0.45 TCGA-EB-A4XL-01 17 80040804 80040804 G A FASN Missense_Mutation p.S1918F 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A4XL-01 17 9680519 9680519 G A DHRS7C Missense_Mutation p.R189C 0.41 deleterious(0) probably_damaging(0.995) TCGA-EB-A4XL-01 18 14479173 14479173 C T CXADRP3 RNA 0.30 TCGA-EB-A4XL-01 18 29055987 29055987 A T DSG3 Missense_Mutation p.I922F 0.26 deleterious(0.01) benign(0.398) TCGA-EB-A4XL-01 18 29055989 29055989 C T DSG3 Silent p.I922I 0.26 TCGA-EB-A4XL-01 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.28 benign(0.006) TCGA-EB-A4XL-01 18 31537407 31537407 G A NOL4 Silent p.I437I 0.62 TCGA-EB-A4XL-01 18 43248361 43248361 G A SLC14A2 Missense_Mutation p.G652E 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 18 46447857 46447857 G A SMAD7 Missense_Mutation p.P389L 0.58 deleterious(0) possibly_damaging(0.772) TCGA-EB-A4XL-01 18 46447858 46447858 G A SMAD7 Missense_Mutation p.P389S 0.56 deleterious(0) probably_damaging(0.997) TCGA-EB-A4XL-01 18 51025756 51025756 A G DCC Silent p.R1329R 0.17 TCGA-EB-A4XL-01 18 59221832 59221832 G A CDH20 Silent p.S770S 0.58 TCGA-EB-A4XL-01 18 61166520 61166520 G A SERPINB5 Silent p.K245K 0.26 TCGA-EB-A4XL-01 18 61390285 61390285 G A SERPINB11 Missense_Mutation p.M277I 0.64 deleterious(0.01) possibly_damaging(0.568) TCGA-EB-A4XL-01 18 76755144 76755144 C T SALL3 Silent p.S1051S 0.23 TCGA-EB-A4XL-01 19 10071003 10071003 G A COL5A3 3'UTR 0.32 TCGA-EB-A4XL-01 19 10489041 10489041 G A TYK2 Silent p.P14P 0.37 TCGA-EB-A4XL-01 19 10624884 10624884 G A S1PR5 Silent p.F268F 0.46 TCGA-EB-A4XL-01 19 11727949 11727949 C T ZNF627 Missense_Mutation p.R211C 0.36 deleterious(0.02) probably_damaging(0.948) TCGA-EB-A4XL-01 19 11793458 11793458 G A ZNF833P RNA 0.26 TCGA-EB-A4XL-01 19 12090224 12090224 C T ZNF763 3'UTR 0.32 TCGA-EB-A4XL-01 19 1615573 1615573 G A TCF3 Intron 0.42 TCGA-EB-A4XL-01 19 16899909 16899909 G A NWD1 Missense_Mutation p.D950N 0.42 deleterious(0.04) benign(0.347) TCGA-EB-A4XL-01 19 17088303 17088303 G A CPAMD8 Missense_Mutation p.L592F 0.44 tolerated(0.17) probably_damaging(0.984) TCGA-EB-A4XL-01 19 17322820 17322820 C T MYO9B 3'UTR 0.38 TCGA-EB-A4XL-01 19 1881297 1881297 G A ABHD17A Missense_Mutation p.P90L 0.25 tolerated(0.8) benign(0.001) TCGA-EB-A4XL-01 19 19232200 19232200 G A TMEM161A Silent p.P277P 0.50 TCGA-EB-A4XL-01 19 19257566 19257566 C T MEF2B Silent p.G220G 0.38 TCGA-EB-A4XL-01 19 22379436 22379436 C T ZNF676 5'UTR 0.35 TCGA-EB-A4XL-01 19 3011088 3011088 G A TLE2 Missense_Mutation p.P315L 0.35 deleterious(0.01) possibly_damaging(0.743) TCGA-EB-A4XL-01 19 362102 362102 G A THEG 3'UTR 0.31 TCGA-EB-A4XL-01 19 3760036 3760036 G A APBA3 Missense_Mutation p.P76L 0.42 tolerated_low_confidence(0.11) benign(0.043) TCGA-EB-A4XL-01 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.37 deleterious(0.04) benign(0.382) TCGA-EB-A4XL-01 19 38229622 38229622 G A ZNF573 Missense_Mutation p.A590V 0.39 deleterious(0.03) benign(0.055) TCGA-EB-A4XL-01 19 38230047 38230047 T A ZNF573 Missense_Mutation p.K448N 0.38 deleterious(0.01) benign(0.006) TCGA-EB-A4XL-01 19 3823293 3823293 G A ZFR2 Missense_Mutation p.P441L 0.42 tolerated(0.15) benign(0.017) TCGA-EB-A4XL-01 19 40578021 40578021 G A ZNF780A 3'Flank 0.77 TCGA-EB-A4XL-01 19 43373139 43373139 C T PSG1 Missense_Mutation p.E253K 0.37 tolerated(0.2) probably_damaging(0.96) TCGA-EB-A4XL-01 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.39 tolerated(0.18) possibly_damaging(0.507) TCGA-EB-A4XL-01 19 44130945 44130945 C T CADM4 Missense_Mutation p.E164K 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A4XL-01 19 44130946 44130946 C T CADM4 Silent p.K163K 0.38 TCGA-EB-A4XL-01 19 44303919 44303919 C T LYPD5 Missense_Mutation p.M44I 0.29 tolerated(0.22) benign(0.005) TCGA-EB-A4XL-01 19 44891305 44891305 C T ZNF285 Missense_Mutation p.G368R 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-EB-A4XL-01 19 44932430 44932430 C T ZNF229 3'UTR 0.40 TCGA-EB-A4XL-01 19 45381888 45381888 G A PVRL2 Intron 0.18 TCGA-EB-A4XL-01 19 45731240 45731240 G A EXOC3L2 Silent p.F95F 0.31 TCGA-EB-A4XL-01 19 46387879 46387879 G A IRF2BP1 Missense_Mutation p.P385L 0.49 deleterious(0) possibly_damaging(0.908) TCGA-EB-A4XL-01 19 48565296 48565296 G A PLA2G4C Missense_Mutation p.L416F 0.42 deleterious(0.01) probably_damaging(0.926) TCGA-EB-A4XL-01 19 52327243 52327243 G A FPR3 Missense_Mutation p.R81Q 0.50 tolerated(0.24) benign(0.001) TCGA-EB-A4XL-01 19 52496743 52496743 C T ZNF615 Missense_Mutation p.G540E 0.48 tolerated(1) probably_damaging(0.992) TCGA-EB-A4XL-01 19 55143472 55143472 G A LILRB1 Missense_Mutation p.V149M 0.40 tolerated(0.19) benign(0.008) TCGA-EB-A4XL-01 19 55743298 55743298 G A PPP6R1 Silent p.S726S 0.33 TCGA-EB-A4XL-01 19 56733458 56733458 C T ZSCAN5A Missense_Mutation p.G326E 0.20 tolerated(0.09) benign(0.194) TCGA-EB-A4XL-01 19 57089029 57089029 G A ZNF470 Missense_Mutation p.G411E 0.49 deleterious(0.05) probably_damaging(1) TCGA-EB-A4XL-01 19 57328349 57328349 G A PEG3 Silent p.I487I 0.37 TCGA-EB-A4XL-01 19 57642000 57642000 G A USP29 Missense_Mutation p.D653N 0.46 tolerated(1) possibly_damaging(0.772) TCGA-EB-A4XL-01 19 58018198 58018198 G A ZNF773 Silent p.R245R 0.31 TCGA-EB-A4XL-01 19 9071642 9071642 C T MUC16 Silent p.T5268T 0.42 TCGA-EB-A4XL-01 19 9074690 9074690 C T MUC16 Missense_Mutation p.M4252I 0.19 unknown(0) TCGA-EB-A4XL-01 19 9089060 9089060 C T MUC16 Missense_Mutation p.E919K 0.42 unknown(0) TCGA-EB-A4XL-01 19 9226302 9226302 G A OR7G1 Silent p.L46L 0.23 TCGA-EB-A4XL-01 19 9361791 9361791 C T OR7E24 Silent p.L24L 0.45 TCGA-EB-A4XL-01 19 9524606 9524606 G A ZNF266 Missense_Mutation p.S332F 0.47 tolerated(0.25) possibly_damaging(0.854) TCGA-EB-A4XL-01 19 9806868 9806868 G A ZNF812 5'UTR 0.27 TCGA-EB-A4XL-01 1 100185200 100185200 C T FRRS1 Missense_Mutation p.R337Q 0.33 tolerated(0.66) benign(0.021) TCGA-EB-A4XL-01 1 101186280 101186280 G A VCAM1 Missense_Mutation p.E105K 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 1 103364511 103364511 C T COL11A1 Missense_Mutation p.E1376K 0.33 unknown(0) TCGA-EB-A4XL-01 1 109394291 109394291 T G AKNAD1 Intron 0.38 TCGA-EB-A4XL-01 1 112524937 112524937 C T KCND3 Missense_Mutation p.D138N 0.29 deleterious(0) benign(0.38) TCGA-EB-A4XL-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.33 deleterious(0.01) benign(0.045) TCGA-EB-A4XL-01 1 115256531 115256531 T C NRAS Silent p.G60G 0.33 TCGA-EB-A4XL-01 1 115256556 115256556 A C NRAS Missense_Mutation p.L52W 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 1 115615589 115615589 G A TSPAN2 Missense_Mutation p.R37W 0.38 deleterious(0.02) probably_damaging(1) TCGA-EB-A4XL-01 1 12888357 12888357 C T PRAMEF11 Missense_Mutation p.R56K 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-EB-A4XL-01 1 144814761 144814761 C A NBPF9 Silent p.S132S 0.38 TCGA-EB-A4XL-01 1 144814762 144814762 C T NBPF9 Missense_Mutation p.R133C 0.38 tolerated(0.26) benign(0.003) TCGA-EB-A4XL-01 1 144859976 144859976 G A PDE4DIP Silent p.H2036H 0.21 TCGA-EB-A4XL-01 1 147410859 147410859 C T GPR89B Missense_Mutation p.S45F 0.18 deleterious(0) probably_damaging(0.954) TCGA-EB-A4XL-01 1 151993765 151993765 C T NBPF18P RNA 0.42 TCGA-EB-A4XL-01 1 152058541 152058541 G A TCHHL1 Silent p.F539F 0.42 TCGA-EB-A4XL-01 1 152278979 152278979 C T FLG Missense_Mutation p.G2795R 0.26 possibly_damaging(0.584) TCGA-EB-A4XL-01 1 152283065 152283065 C T FLG Missense_Mutation p.E1433K 0.50 benign(0.292) TCGA-EB-A4XL-01 1 153065951 153065951 G A SPRR2E 3'UTR 0.46 TCGA-EB-A4XL-01 1 155988122 155988122 G A SSR2 Missense_Mutation p.P65S 0.44 tolerated(0.36) possibly_damaging(0.757) TCGA-EB-A4XL-01 1 156812855 156812855 C T INSRR Missense_Mutation p.E1023K 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A4XL-01 1 156917997 156917997 G A ARHGEF11 Missense_Mutation p.P710L 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 1 158323769 158323769 C A CD1E 5'UTR 0.37 TCGA-EB-A4XL-01 1 159856305 159856305 T C CCDC19 Missense_Mutation p.I255V 0.41 tolerated(0.12) benign(0.019) TCGA-EB-A4XL-01 1 159856453 159856453 G A CCDC19 Silent p.A205A 0.36 TCGA-EB-A4XL-01 1 161126782 161126782 C T UFC1 Silent p.L56L 0.39 TCGA-EB-A4XL-01 1 161335373 161335373 C T C1orf192 Silent p.Q97Q 0.44 TCGA-EB-A4XL-01 1 161335374 161335374 T G C1orf192 Missense_Mutation p.Q97P 0.44 deleterious(0.03) possibly_damaging(0.447) TCGA-EB-A4XL-01 1 174200367 174200367 G T RABGAP1L Missense_Mutation p.C139F 0.43 deleterious(0.01) benign(0.141) TCGA-EB-A4XL-01 1 177001794 177001794 G A ASTN1 Silent p.R221R 0.23 TCGA-EB-A4XL-01 1 177133719 177133719 C T ASTN1 Missense_Mutation p.E32K 0.45 deleterious_low_confidence(0.01) benign(0.218) TCGA-EB-A4XL-01 1 179064435 179064435 G A TOR3A 3'UTR 0.49 TCGA-EB-A4XL-01 1 179081458 179081458 G C ABL2 Missense_Mutation p.S546C 0.21 deleterious(0) probably_damaging(0.994) TCGA-EB-A4XL-01 1 180772748 180772748 G A XPR1 Splice_Site p.X149_splice 0.53 TCGA-EB-A4XL-01 1 180772749 180772749 T A XPR1 Splice_Site p.X149_splice 0.55 TCGA-EB-A4XL-01 1 180914514 180914514 C T KIAA1614 Silent p.G1121G 0.17 TCGA-EB-A4XL-01 1 200869275 200869275 G A C1orf106 Missense_Mutation p.G75E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 1 200944728 200944728 C T KIF21B Missense_Mutation p.D1505N 0.49 deleterious(0) probably_damaging(0.979) TCGA-EB-A4XL-01 1 20097050 20097050 A C TMCO4 Missense_Mutation p.F123V 0.21 tolerated(0.06) benign(0.135) TCGA-EB-A4XL-01 1 206758717 206758717 G A RASSF5 Intron 0.54 TCGA-EB-A4XL-01 1 207647629 207647629 G A CR2 Missense_Mutation p.E762K 0.18 tolerated(0.14) benign(0.024) TCGA-EB-A4XL-01 1 211842668 211842668 G A NEK2 Missense_Mutation p.H258Y 0.52 tolerated(1) benign(0) TCGA-EB-A4XL-01 1 211842669 211842669 G A NEK2 Silent p.Y257Y 0.50 TCGA-EB-A4XL-01 1 212799916 212799916 C T FAM71A Missense_Mutation p.A566V 0.29 tolerated(1) benign(0.001) TCGA-EB-A4XL-01 1 220805572 220805572 G A MARK1 Missense_Mutation p.D347N 0.38 tolerated(0.05) benign(0.001) TCGA-EB-A4XL-01 1 222922866 222922866 C T FAM177B Nonsense_Mutation p.Q101* 0.35 TCGA-EB-A4XL-01 1 223284407 223284407 G A TLR5 Missense_Mutation p.T656I 0.42 tolerated(0.12) benign(0.004) TCGA-EB-A4XL-01 1 231060694 231060694 G A TTC13 Silent p.V538V 0.47 TCGA-EB-A4XL-01 1 233344377 233344377 A G PCNXL2 Missense_Mutation p.L917P 0.38 deleterious(0) probably_damaging(0.976) TCGA-EB-A4XL-01 1 233394635 233394635 C T PCNXL2 Missense_Mutation p.E325K 0.55 tolerated_low_confidence(0.44) benign(0.001) TCGA-EB-A4XL-01 1 236189429 236189429 G A NID1 Missense_Mutation p.S584F 0.14 deleterious(0.02) benign(0.301) TCGA-EB-A4XL-01 1 240071404 240071404 C T CHRM3 Missense_Mutation p.P218L 0.47 tolerated(0.07) benign(0.017) TCGA-EB-A4XL-01 1 247588907 247588907 G A NLRP3 Intron 0.21 TCGA-EB-A4XL-01 1 247694899 247694899 C T OR2C3 Missense_Mutation p.M305I 0.53 tolerated(0.21) benign(0) TCGA-EB-A4XL-01 1 248308603 248308603 G T OR2M5 Missense_Mutation p.D52Y 0.19 deleterious(0.02) benign(0.112) TCGA-EB-A4XL-01 1 248616503 248616503 C T OR2T2 Silent p.L135L 0.24 TCGA-EB-A4XL-01 1 33549701 33549701 G A ADC Silent p.L84L 0.36 TCGA-EB-A4XL-01 1 34033226 34033226 G A CSMD2 Missense_Mutation p.H2760Y 0.31 deleterious(0.03) probably_damaging(0.931) TCGA-EB-A4XL-01 1 35259951 35259951 G A GJA4 Missense_Mutation p.G46D 0.37 deleterious(0.01) benign(0.011) TCGA-EB-A4XL-01 1 39919411 39919411 G A MACF1 Silent p.V4866V 0.35 TCGA-EB-A4XL-01 1 43201582 43201582 G A CLDN19 Missense_Mutation p.P198L 0.50 tolerated(0.31) benign(0.014) TCGA-EB-A4XL-01 1 48701526 48701526 G A SLC5A9 Missense_Mutation p.E448K 0.36 deleterious(0) probably_damaging(0.997) TCGA-EB-A4XL-01 1 53544534 53544534 G A PODN Missense_Mutation p.R499Q 0.30 tolerated(0.09) possibly_damaging(0.477) TCGA-EB-A4XL-01 1 57399048 57399048 G A C8B Silent p.H504H 0.37 TCGA-EB-A4XL-01 1 64643925 64643925 C T ROR1 Missense_Mutation p.S734F 0.49 deleterious(0.03) possibly_damaging(0.622) TCGA-EB-A4XL-01 1 76343953 76343953 T A MSH4 Missense_Mutation p.F497Y 0.44 tolerated(0.15) benign(0.014) TCGA-EB-A4XL-01 1 7798107 7798107 C A CAMTA1 Missense_Mutation p.N1249K 0.21 deleterious_low_confidence(0) benign(0.146) TCGA-EB-A4XL-01 1 92177850 92177850 C T TGFBR3 Missense_Mutation p.E706K 0.36 deleterious(0) probably_damaging(0.964) TCGA-EB-A4XL-01 1 98348924 98348924 G A DPYD Silent p.L16L 0.30 TCGA-EB-A4XL-01 20 10279986 10279986 C T SNAP25 Missense_Mutation p.L160F 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 20 10621555 10621555 C T JAG1 Silent p.G1025G 0.33 TCGA-EB-A4XL-01 20 13260469 13260469 C T ISM1 Silent p.F189F 0.28 TCGA-EB-A4XL-01 20 1456777 1456777 C T SIRPB2 3'UTR 0.42 TCGA-EB-A4XL-01 20 1532542 1532542 C T SIRPD Silent p.R72R 0.45 TCGA-EB-A4XL-01 20 20033166 20033166 C T CRNKL1 Missense_Mutation p.G102R 0.50 deleterious_low_confidence(0) benign(0) TCGA-EB-A4XL-01 20 2641562 2641562 G A IDH3B Missense_Mutation p.R131W 0.06 deleterious(0.02) probably_damaging(0.912) TCGA-EB-A4XL-01 20 29961031 29961031 G A DEFB118 3'UTR 0.43 TCGA-EB-A4XL-01 20 31600686 31600686 C A BPIFB2 Missense_Mutation p.A94E 0.35 tolerated(0.06) possibly_damaging(0.876) TCGA-EB-A4XL-01 20 31600687 31600687 A G BPIFB2 Silent p.A94A 0.34 TCGA-EB-A4XL-01 20 33330469 33330469 G A NCOA6 Silent p.F1197F 0.38 TCGA-EB-A4XL-01 20 3649514 3649514 C T ADAM33 3'UTR 0.34 TCGA-EB-A4XL-01 20 39832083 39832083 G A ZHX3 Missense_Mutation p.L492F 0.42 tolerated(0.12) benign(0.071) TCGA-EB-A4XL-01 20 39832084 39832084 G A ZHX3 Silent p.F491F 0.41 TCGA-EB-A4XL-01 20 39992307 39992307 G A EMILIN3 Missense_Mutation p.S162F 0.35 tolerated(0.2) benign(0.252) TCGA-EB-A4XL-01 20 47266709 47266709 G A PREX1 Silent p.P951P 0.39 TCGA-EB-A4XL-01 20 60348222 60348222 C T CDH4 Missense_Mutation p.P187L 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A4XL-01 20 61524287 61524287 C T DIDO1 Silent p.E1043E 0.35 TCGA-EB-A4XL-01 20 62178612 62178612 C T SRMS Missense_Mutation p.E69K 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A4XL-01 20 9416211 9416211 C T PLCB4 Silent p.I831I 0.40 TCGA-EB-A4XL-01 20 9457363 9457363 G A PLCB4 Splice_Site p.X1154_splice 0.43 TCGA-EB-A4XL-01 21 41711119 41711119 G T DSCAM Missense_Mutation p.D478E 0.43 deleterious(0.01) probably_damaging(1) TCGA-EB-A4XL-01 21 47614453 47614453 G A LSS Missense_Mutation p.S647F 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 22 26423263 26423263 C T MYO18B Silent p.F2441F 0.40 TCGA-EB-A4XL-01 22 28193077 28193077 G A MN1 Missense_Mutation p.P1152L 0.33 probably_damaging(0.999) TCGA-EB-A4XL-01 22 32587155 32587155 C T RFPL2 Silent p.V247V 0.03 TCGA-EB-A4XL-01 22 32756423 32756423 G A RFPL3 Silent p.V186V 0.18 TCGA-EB-A4XL-01 22 40366930 40366930 C T GRAP2 Silent p.L279L 0.34 TCGA-EB-A4XL-01 2 107459825 107459825 G A ST6GAL2 Silent p.F203F 0.41 TCGA-EB-A4XL-01 2 111881427 111881427 C T BCL2L11 Silent p.S35S 0.34 TCGA-EB-A4XL-01 2 112529970 112529970 G A ANAPC1 Silent p.L1889L 0.36 TCGA-EB-A4XL-01 2 116101408 116101408 C T DPP10 Missense_Mutation p.S68L 0.35 tolerated(0.33) benign(0.001) TCGA-EB-A4XL-01 2 131103679 131103679 C T IMP4 Missense_Mutation p.S228L 0.48 deleterious(0.01) benign(0.05) TCGA-EB-A4XL-01 2 131487620 131487620 G A GPR148 Nonsense_Mutation p.W299* 0.38 TCGA-EB-A4XL-01 2 133175326 133175326 C T GPR39 Silent p.S237S 0.43 TCGA-EB-A4XL-01 2 135741278 135741278 C T MAP3K19 Missense_Mutation p.G1064S 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 2 136579486 136579486 C T LCT Intron 0.46 TCGA-EB-A4XL-01 2 136579487 136579487 C T LCT Intron 0.43 TCGA-EB-A4XL-01 2 137814719 137814719 C T THSD7B Missense_Mutation p.S290L 0.15 tolerated(0.18) possibly_damaging(0.846) TCGA-EB-A4XL-01 2 141259322 141259322 A C LRP1B Missense_Mutation p.N2928K 0.46 benign(0.403) TCGA-EB-A4XL-01 2 152512897 152512897 G A NEB Missense_Mutation p.H2089Y 0.36 probably_damaging(0.999) TCGA-EB-A4XL-01 2 166172139 166172139 T G SCN2A Silent p.S514S 0.25 TCGA-EB-A4XL-01 2 169690785 169690785 C T NOSTRIN Nonsense_Mutation p.Q152* 0.36 TCGA-EB-A4XL-01 2 171242778 171242778 G A MYO3B Missense_Mutation p.G457E 0.38 deleterious(0) probably_damaging(0.992) TCGA-EB-A4XL-01 2 171358304 171358304 G A MYO3B Missense_Mutation p.G1100E 0.35 deleterious(0) probably_damaging(0.928) TCGA-EB-A4XL-01 2 179412748 179412748 G A TTN Missense_Mutation p.S31202F 0.37 TCGA-EB-A4XL-01 2 179560091 179560091 T G TTN Silent p.A10418A 0.20 TCGA-EB-A4XL-01 2 179603068 179603068 C T TTN Silent p.R4704R 0.40 TCGA-EB-A4XL-01 2 179633423 179633423 G A TTN Missense_Mutation p.S3047L 0.43 TCGA-EB-A4XL-01 2 179634890 179634890 C T TTN Silent p.R2846R 0.29 TCGA-EB-A4XL-01 2 179721084 179721084 T A CCDC141 Missense_Mutation p.N922I 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 2 186670609 186670609 G A FSIP2 Missense_Mutation p.G5615R 0.17 benign(0.006) TCGA-EB-A4XL-01 2 189962046 189962046 C T COL5A2 Missense_Mutation p.G138E 0.42 probably_damaging(0.999) TCGA-EB-A4XL-01 2 202590132 202590132 G T ALS2 Missense_Mutation p.D1098E 0.36 tolerated(0.06) possibly_damaging(0.562) TCGA-EB-A4XL-01 2 204304026 204304026 C A RAPH1 3'UTR 0.70 TCGA-EB-A4XL-01 2 205986450 205986450 G A PARD3B Silent p.L314L 0.36 TCGA-EB-A4XL-01 2 206023576 206023576 G A PARD3B Intron 0.06 TCGA-EB-A4XL-01 2 207171573 207171573 G A ZDBF2 Missense_Mutation p.R774Q 0.42 tolerated(0.19) possibly_damaging(0.614) TCGA-EB-A4XL-01 2 212812260 212812260 G A ERBB4 Missense_Mutation p.R106C 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 2 215802303 215802303 C T ABCA12 Silent p.K2491K 0.33 TCGA-EB-A4XL-01 2 219694905 219694905 C T PRKAG3 Silent p.E143E 0.38 TCGA-EB-A4XL-01 2 223781102 223781102 A G ACSL3 Silent p.G148G 0.45 TCGA-EB-A4XL-01 2 227872981 227872981 G A COL4A4 Missense_Mutation p.P1521L 0.39 unknown(0) TCGA-EB-A4XL-01 2 227895189 227895189 G A COL4A4 Missense_Mutation p.P1315S 0.36 unknown(0) TCGA-EB-A4XL-01 2 228883266 228883266 G A SPHKAP Silent p.S768S 0.40 TCGA-EB-A4XL-01 2 229890307 229890307 C T PID1 3'UTR 0.32 TCGA-EB-A4XL-01 2 229890308 229890308 C T PID1 3'UTR 0.33 TCGA-EB-A4XL-01 2 234591344 234591344 G A UGT1A7 Missense_Mutation p.R254Q 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-EB-A4XL-01 2 234669352 234669352 T C UGT1A8 Intron 0.35 TCGA-EB-A4XL-01 2 234775147 234775147 G A MSL3P1 RNA 0.29 TCGA-EB-A4XL-01 2 27566257 27566257 G A GTF3C2 Silent p.T55T 0.42 TCGA-EB-A4XL-01 2 27802990 27802990 G A C2orf16 Missense_Mutation p.R1184K 0.34 tolerated(0.06) benign(0.007) TCGA-EB-A4XL-01 2 32422814 32422814 T A SLC30A6 Missense_Mutation p.L235H 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 2 32743947 32743947 C T BIRC6 Missense_Mutation p.H3853Y 0.48 probably_damaging(0.979) TCGA-EB-A4XL-01 2 40342430 40342430 G A SLC8A1 Missense_Mutation p.S962F 0.40 deleterious(0) probably_damaging(0.992) TCGA-EB-A4XL-01 2 43871819 43871819 G T PLEKHH2 Nonsense_Mutation p.E3* 0.31 TCGA-EB-A4XL-01 2 49190146 49190146 G A FSHR Missense_Mutation p.S605F 0.35 deleterious(0) probably_damaging(0.955) TCGA-EB-A4XL-01 2 87042739 87042739 C T CD8B Silent p.L241L 0.40 TCGA-EB-A4XL-01 3 121724150 121724150 C T ILDR1 Missense_Mutation p.G107E 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 3 122334584 122334584 T A PARP15 Intron 0.36 TCGA-EB-A4XL-01 3 123987880 123987880 G A KALRN Silent p.R247R 0.33 TCGA-EB-A4XL-01 3 124165040 124165040 C T KALRN Missense_Mutation p.R1114C 0.45 deleterious(0.03) probably_damaging(0.975) TCGA-EB-A4XL-01 3 125833420 125833420 G A ALDH1L1 Missense_Mutation p.L698F 0.35 deleterious(0.04) possibly_damaging(0.462) TCGA-EB-A4XL-01 3 126071390 126071390 G A KLF15 Missense_Mutation p.P126S 0.50 tolerated(0.82) benign(0.01) TCGA-EB-A4XL-01 3 13367344 13367344 G A NUP210 Missense_Mutation p.S1532F 0.34 deleterious(0.03) benign(0.125) TCGA-EB-A4XL-01 3 1339598 1339598 G A CNTN6 Silent p.K228K 0.30 TCGA-EB-A4XL-01 3 1444161 1444161 A T CNTN6 Nonsense_Mutation p.K993* 0.24 TCGA-EB-A4XL-01 3 14862611 14862611 C T FGD5 Missense_Mutation p.S678F 0.36 tolerated(0.06) probably_damaging(0.981) TCGA-EB-A4XL-01 3 150931517 150931517 C T P2RY14 Nonsense_Mutation p.W196* 0.35 TCGA-EB-A4XL-01 3 164764781 164764781 G A SI Missense_Mutation p.P579S 0.60 tolerated(0.11) benign(0.015) TCGA-EB-A4XL-01 3 164780173 164780173 G A SI Nonsense_Mutation p.Q336* 0.40 TCGA-EB-A4XL-01 3 172607409 172607409 C T SPATA16 Missense_Mutation p.R554Q 0.38 deleterious(0.01) benign(0.417) TCGA-EB-A4XL-01 3 180322292 180322292 C T TTC14 Missense_Mutation p.H200Y 0.28 deleterious(0.01) possibly_damaging(0.78) TCGA-EB-A4XL-01 3 18438772 18438772 G A SATB1 Missense_Mutation p.S217F 0.39 deleterious(0) probably_damaging(0.937) TCGA-EB-A4XL-01 3 190025976 190025976 C T CLDN1 3'UTR 0.28 TCGA-EB-A4XL-01 3 190025977 190025977 C T CLDN1 3'UTR 0.28 TCGA-EB-A4XL-01 3 3084079 3084079 G A CNTN4 Silent p.K828K 0.23 TCGA-EB-A4XL-01 3 32933082 32933082 C T TRIM71 Missense_Mutation p.R796C 0.46 deleterious(0) probably_damaging(0.991) TCGA-EB-A4XL-01 3 35778720 35778720 A C ARPP21 Missense_Mutation p.T470P 0.36 tolerated(0.29) benign(0.005) TCGA-EB-A4XL-01 3 36871054 36871054 C T TRANK1 Splice_Site p.X2893_splice 0.38 TCGA-EB-A4XL-01 3 36871055 36871055 C T TRANK1 Missense_Mutation p.G2893S 0.36 deleterious(0.01) probably_damaging(0.958) TCGA-EB-A4XL-01 3 36874981 36874981 C T TRANK1 Silent p.E1987E 0.38 TCGA-EB-A4XL-01 3 38739232 38739232 C T SCN10A Missense_Mutation p.E1827K 0.42 deleterious(0) probably_damaging(0.961) TCGA-EB-A4XL-01 3 38904752 38904752 C T SCN11A Silent p.K1330K 0.41 TCGA-EB-A4XL-01 3 440739 440739 G A CHL1 Nonsense_Mutation p.W1098* 0.36 TCGA-EB-A4XL-01 3 51378726 51378726 A G DOCK3 Silent p.L1275L 0.32 TCGA-EB-A4XL-01 3 51456272 51456272 A C VPRBP Missense_Mutation p.C670G 0.19 deleterious(0.04) benign(0.395) TCGA-EB-A4XL-01 3 52455730 52455730 C T PHF7 Missense_Mutation p.P214S 0.38 tolerated(0.13) probably_damaging(0.962) TCGA-EB-A4XL-01 3 52548415 52548415 G A STAB1 Missense_Mutation p.G1194E 0.33 deleterious(0) probably_damaging(0.995) TCGA-EB-A4XL-01 3 56468986 56468986 C T ERC2 Missense_Mutation p.R17K 0.32 deleterious(0.01) possibly_damaging(0.867) TCGA-EB-A4XL-01 3 89498386 89498386 C T EPHA3 Silent p.I786I 0.43 TCGA-EB-A4XL-01 3 97356825 97356825 G A EPHA6 Missense_Mutation p.A895T 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 3 9799458 9799458 C T CAMK1 Missense_Mutation p.G329R 0.44 tolerated(0.09) benign(0.372) TCGA-EB-A4XL-01 3 99514138 99514138 G A COL8A1 Missense_Mutation p.G465R 0.52 deleterious(0) unknown(0) TCGA-EB-A4XL-01 4 101108941 101108941 G A DDIT4L Missense_Mutation p.R159C 0.29 tolerated(0.51) benign(0.001) TCGA-EB-A4XL-01 4 108871477 108871477 C T CYP2U1 Silent p.F511F 0.25 TCGA-EB-A4XL-01 4 110884429 110884429 G A EGF Silent p.L471L 0.38 TCGA-EB-A4XL-01 4 122254176 122254176 G A QRFPR Silent p.I199I 0.05 TCGA-EB-A4XL-01 4 138451479 138451479 G A PCDH18 Silent p.I588I 0.37 TCGA-EB-A4XL-01 4 138451705 138451705 G A PCDH18 Missense_Mutation p.S513F 0.40 deleterious(0) probably_damaging(0.925) TCGA-EB-A4XL-01 4 140651766 140651766 G A MAML3 Missense_Mutation p.P712L 0.27 benign(0.309) TCGA-EB-A4XL-01 4 140651767 140651767 G A MAML3 Missense_Mutation p.P712S 0.27 benign(0.242) TCGA-EB-A4XL-01 4 146059680 146059680 G A OTUD4 Silent p.F684F 0.40 TCGA-EB-A4XL-01 4 153691754 153691754 G A TIGD4 Missense_Mutation p.R135C 0.37 deleterious(0) probably_damaging(0.998) TCGA-EB-A4XL-01 4 156752997 156752997 C T ASIC5 Missense_Mutation p.V436M 0.34 tolerated(0.29) benign(0.098) TCGA-EB-A4XL-01 4 157684347 157684347 C T PDGFC Silent p.L311L 0.43 TCGA-EB-A4XL-01 4 157771481 157771481 C T PDGFC Missense_Mutation p.R69K 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A4XL-01 4 165962343 165962343 G A TRIM60 Silent p.R373R 0.34 TCGA-EB-A4XL-01 4 174448335 174448335 G A HAND2 3'UTR 0.38 TCGA-EB-A4XL-01 4 175897197 175897197 G A ADAM29 Missense_Mutation p.R174Q 0.40 tolerated(1) benign(0) TCGA-EB-A4XL-01 4 176594872 176594872 C T GPM6A Missense_Mutation p.D116N 0.41 deleterious(0.01) possibly_damaging(0.759) TCGA-EB-A4XL-01 4 186998199 186998199 C T TLR3 Silent p.P142P 0.34 TCGA-EB-A4XL-01 4 26756521 26756521 A G TBC1D19 Silent p.L511L 0.35 TCGA-EB-A4XL-01 4 41016329 41016329 G A APBB2 Missense_Mutation p.P36S 0.42 tolerated(0.13) probably_damaging(0.999) TCGA-EB-A4XL-01 4 62862036 62862036 C T LPHN3 Silent p.F1020F 0.36 TCGA-EB-A4XL-01 4 69434073 69434073 C T UGT2B17 Missense_Mutation p.E44K 0.35 deleterious(0.04) benign(0.029) TCGA-EB-A4XL-01 4 69535833 69535833 G A UGT2B15 Silent p.P168P 0.12 TCGA-EB-A4XL-01 4 7012499 7012499 C T TBC1D14 Silent p.D546D 0.35 TCGA-EB-A4XL-01 4 7012500 7012500 C G TBC1D14 Missense_Mutation p.H547D 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A4XL-01 4 71200751 71200751 C T CABS1 5'UTR 0.52 TCGA-EB-A4XL-01 4 71275679 71275679 C T PROL1 Missense_Mutation p.P212S 0.28 deleterious_low_confidence(0) unknown(0) TCGA-EB-A4XL-01 4 71347149 71347149 G A MUC7 Missense_Mutation p.A230T 0.44 tolerated(0.52) unknown(0) TCGA-EB-A4XL-01 4 9784754 9784754 G A DRD5 Silent p.K367K 0.48 TCGA-EB-A4XL-01 5 112349021 112349021 C T DCP2 Missense_Mutation p.A368V 0.40 tolerated_low_confidence(0.1) benign(0.046) TCGA-EB-A4XL-01 5 114552644 114552644 G A PGGT1B Silent p.N290N 0.33 TCGA-EB-A4XL-01 5 121187722 121187722 G A FTMT Missense_Mutation p.V22M 0.49 tolerated_low_confidence(0.06) benign(0.275) TCGA-EB-A4XL-01 5 128864288 128864288 A C ADAMTS19 Missense_Mutation p.K410Q 0.11 tolerated(0.3) benign(0.148) TCGA-EB-A4XL-01 5 131647748 131647748 G A SLC22A4 Intron 0.44 TCGA-EB-A4XL-01 5 132160466 132160466 G A SHROOM1 Missense_Mutation p.P361L 0.39 tolerated(0.25) benign(0.01) TCGA-EB-A4XL-01 5 135207559 135207559 C T SLC25A48 Intron 0.25 TCGA-EB-A4XL-01 5 135692946 135692946 C T TRPC7 Missense_Mutation p.E44K 0.33 deleterious(0) benign(0.417) TCGA-EB-A4XL-01 5 140250856 140250856 C T PCDHA11 Missense_Mutation p.S723L 0.57 deleterious_low_confidence(0.02) benign(0.11) TCGA-EB-A4XL-01 5 140554513 140554513 C T PCDHB7 Silent p.F699F 0.23 TCGA-EB-A4XL-01 5 140596039 140596039 G A PCDHB13 Missense_Mutation p.E782K 0.54 tolerated_low_confidence(0.19) benign(0.007) TCGA-EB-A4XL-01 5 140773798 140773798 C T PCDHGA8 Missense_Mutation p.S473F 0.82 deleterious_low_confidence(0) benign(0.43) TCGA-EB-A4XL-01 5 141244525 141244525 G A PCDH1 Silent p.F457F 0.71 TCGA-EB-A4XL-01 5 145895521 145895521 C T GPR151 Silent p.V52V 0.70 TCGA-EB-A4XL-01 5 147488359 147488359 G A SPINK5 Missense_Mutation p.G551R 0.76 tolerated(0.34) benign(0.062) TCGA-EB-A4XL-01 5 149513293 149513293 A T PDGFRB Missense_Mutation p.F264I 0.61 tolerated(0.29) benign(0.287) TCGA-EB-A4XL-01 5 153056638 153056638 C T GRIA1 Missense_Mutation p.R326C 0.70 deleterious(0) probably_damaging(0.989) TCGA-EB-A4XL-01 5 174156631 174156631 G A MSX2 3'UTR 0.84 TCGA-EB-A4XL-01 5 34933970 34933970 C T DNAJC21 Nonsense_Mutation p.Q50* 0.21 TCGA-EB-A4XL-01 5 35759725 35759725 G A SPEF2 Missense_Mutation p.G1175E 0.39 deleterious(0) benign(0.444) TCGA-EB-A4XL-01 5 36985129 36985129 G A NIPBL Missense_Mutation p.S616N 0.18 tolerated_low_confidence(0.76) benign(0) TCGA-EB-A4XL-01 5 38486011 38486011 C T LIFR Missense_Mutation p.G803S 0.34 tolerated(0.24) possibly_damaging(0.788) TCGA-EB-A4XL-01 5 38528884 38528884 C T LIFR Nonsense_Mutation p.W67* 0.31 TCGA-EB-A4XL-01 5 41038915 41038915 G A MROH2B Missense_Mutation p.P713S 0.44 deleterious(0) probably_damaging(0.984) TCGA-EB-A4XL-01 5 45262291 45262291 G A HCN1 Missense_Mutation p.S802F 0.42 tolerated_low_confidence(0.7) benign(0.146) TCGA-EB-A4XL-01 5 54320636 54320636 G A GZMK Splice_Site p.X71_splice 0.42 TCGA-EB-A4XL-01 5 61648537 61648537 T A KIF2A Missense_Mutation p.S153T 0.13 tolerated(0.33) benign(0.005) TCGA-EB-A4XL-01 5 63256907 63256907 G A HTR1A Missense_Mutation p.L214F 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 5 65346688 65346688 C T ERBB2IP Missense_Mutation p.P661S 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-EB-A4XL-01 5 65349733 65349733 C T ERBB2IP Missense_Mutation p.P863S 0.31 tolerated(0.09) benign(0.012) TCGA-EB-A4XL-01 5 70308353 70308353 C T NAIP Silent p.K130K 0.22 TCGA-EB-A4XL-01 5 78612101 78612101 G C JMY Missense_Mutation p.A980P 0.28 deleterious(0.02) possibly_damaging(0.636) TCGA-EB-A4XL-01 5 79025507 79025507 C T CMYA5 Missense_Mutation p.L307F 0.49 benign(0.199) TCGA-EB-A4XL-01 5 79616218 79616218 G A SPZ1 Missense_Mutation p.E62K 0.33 tolerated(0.33) benign(0.396) TCGA-EB-A4XL-01 5 90106814 90106814 G A GPR98 Missense_Mutation p.R5246Q 0.37 possibly_damaging(0.602) TCGA-EB-A4XL-01 5 93076362 93076362 G A POU5F2 Missense_Mutation p.P303L 0.51 tolerated(0.09) possibly_damaging(0.713) TCGA-EB-A4XL-01 6 100898194 100898194 C T SIM1 Silent p.G99G 0.37 TCGA-EB-A4XL-01 6 105726220 105726220 C T PREP Silent p.V644V 0.37 TCGA-EB-A4XL-01 6 111213950 111213950 C T AMD1 Missense_Mutation p.R210C 0.44 tolerated(0.2) benign(0.015) TCGA-EB-A4XL-01 6 118015232 118015232 G A NUS1 Missense_Mutation p.E194K 0.06 deleterious(0.03) possibly_damaging(0.643) TCGA-EB-A4XL-01 6 124979502 124979502 G A NKAIN2 Silent p.V148V 0.43 TCGA-EB-A4XL-01 6 125231936 125231936 T C RP11-510H23.1 RNA 0.24 TCGA-EB-A4XL-01 6 126243897 126243897 G A NCOA7 Missense_Mutation p.G814R 0.47 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 6 128643452 128643452 G A PTPRK Missense_Mutation p.S76F 0.33 deleterious(0) benign(0.228) TCGA-EB-A4XL-01 6 130762608 130762608 G A TMEM200A Silent p.R347R 0.41 TCGA-EB-A4XL-01 6 13228185 13228185 A T PHACTR1 Missense_Mutation p.N375I 0.38 deleterious(0) possibly_damaging(0.449) TCGA-EB-A4XL-01 6 135768153 135768153 G A AHI1 Missense_Mutation p.P591L 0.38 deleterious(0.02) benign(0.02) TCGA-EB-A4XL-01 6 139095027 139095027 C T CCDC28A Silent p.T72T 0.43 TCGA-EB-A4XL-01 6 144837380 144837380 G A UTRN Missense_Mutation p.E1754K 0.35 tolerated(0.15) benign(0.015) TCGA-EB-A4XL-01 6 146756034 146756034 C T GRM1 3'UTR 0.27 TCGA-EB-A4XL-01 6 147684633 147684633 C T STXBP5 Missense_Mutation p.P903L 0.49 deleterious(0.01) benign(0.314) TCGA-EB-A4XL-01 6 150386762 150386762 C A ULBP3 Nonsense_Mutation p.G134* 0.41 TCGA-EB-A4XL-01 6 152806003 152806003 C G SYNE1 Missense_Mutation p.L384F 0.46 benign(0.359) TCGA-EB-A4XL-01 6 157522286 157522286 C T ARID1B Nonsense_Mutation p.Q1520* 0.43 TCGA-EB-A4XL-01 6 159420903 159420903 G A RSPH3 Missense_Mutation p.P36S 0.36 tolerated_low_confidence(0.08) benign(0.003) TCGA-EB-A4XL-01 6 159650885 159650885 G A FNDC1 Missense_Mutation p.G407R 0.41 deleterious(0) unknown(0) TCGA-EB-A4XL-01 6 161557644 161557644 C T AGPAT4 Missense_Mutation p.M355I 0.36 tolerated(0.09) possibly_damaging(0.715) TCGA-EB-A4XL-01 6 167570384 167570384 G A GPR31 Silent p.F312F 0.43 TCGA-EB-A4XL-01 6 24489775 24489775 G A GPLD1 5'UTR 0.39 TCGA-EB-A4XL-01 6 25556980 25556980 G A LRRC16A Missense_Mutation p.E882K 0.33 tolerated(0.16) benign(0.158) TCGA-EB-A4XL-01 6 27925897 27925897 G A OR2B6 Silent p.R293R 0.35 TCGA-EB-A4XL-01 6 28251801 28251801 C T PGBD1 Nonsense_Mutation p.Q71* 0.41 TCGA-EB-A4XL-01 6 28541122 28541122 G A SCAND3 Silent p.I848I 0.37 TCGA-EB-A4XL-01 6 29054661 29054661 C T OR2B3 Missense_Mutation p.R122K 0.36 deleterious(0) possibly_damaging(0.701) TCGA-EB-A4XL-01 6 30881663 30881663 T A GTF2H4 Missense_Mutation p.L431H 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A4XL-01 6 31743848 31743848 C T VWA7 Missense_Mutation p.G136R 0.41 deleterious(0) probably_damaging(0.929) TCGA-EB-A4XL-01 6 31855424 31855424 G A EHMT2 Silent p.L647L 0.36 TCGA-EB-A4XL-01 6 36168552 36168552 G A BRPF3 Silent p.E151E 0.40 TCGA-EB-A4XL-01 6 38879280 38879280 C T DNAH8 Silent p.Y3042Y 0.21 TCGA-EB-A4XL-01 6 49574863 49574863 C T RHAG Missense_Mutation p.G380S 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 6 51889986 51889986 C T PKHD1 Missense_Mutation p.R1541K 0.49 tolerated(0.46) benign(0.02) TCGA-EB-A4XL-01 6 55216162 55216162 C T GFRAL Missense_Mutation p.P161L 0.39 tolerated(1) benign(0.001) TCGA-EB-A4XL-01 6 56035873 56035873 C T COL21A1 Missense_Mutation p.D232N 0.41 deleterious(0) probably_damaging(0.987) TCGA-EB-A4XL-01 6 76063300 76063300 T C FILIP1 Missense_Mutation p.N195S 0.45 tolerated(0.32) benign(0.097) TCGA-EB-A4XL-01 6 79577273 79577273 G A IRAK1BP1 5'UTR 0.42 TCGA-EB-A4XL-01 6 79577274 79577274 G A IRAK1BP1 5'UTR 0.42 TCGA-EB-A4XL-01 6 85472391 85472391 G A TBX18 Missense_Mutation p.A123V 0.49 tolerated(0.33) benign(0) TCGA-EB-A4XL-01 6 88125550 88125550 C T C6ORF165 Missense_Mutation p.L144F 0.42 deleterious(0.03) probably_damaging(0.937) TCGA-EB-A4XL-01 7 100683243 100683243 C T MUC17 Missense_Mutation p.S2849L 0.36 unknown(0) TCGA-EB-A4XL-01 7 100686175 100686175 G A MUC17 Silent p.V3826V 0.41 TCGA-EB-A4XL-01 7 100861343 100861343 G A ZNHIT1 5'UTR 0.64 TCGA-EB-A4XL-01 7 101844962 101844962 C T CUX1 Silent p.D806D 0.43 TCGA-EB-A4XL-01 7 103162557 103162557 G A RELN Missense_Mutation p.S2527F 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-EB-A4XL-01 7 103252111 103252111 C T RELN Missense_Mutation p.V948M 0.41 deleterious(0) possibly_damaging(0.883) TCGA-EB-A4XL-01 7 122337825 122337825 C T RNF133 3'UTR 0.37 TCGA-EB-A4XL-01 7 130038816 130038816 C T CEP41 Silent p.Q346Q 0.36 TCGA-EB-A4XL-01 7 135276343 135276343 G T NUP205 Missense_Mutation p.S540I 0.30 deleterious(0.05) benign(0.056) TCGA-EB-A4XL-01 7 137761181 137761181 C T AKR1D1 5'Flank 0.42 TCGA-EB-A4XL-01 7 137801472 137801472 C T AKR1D1 3'UTR 0.42 TCGA-EB-A4XL-01 7 138969268 138969268 C T UBN2 Missense_Mutation p.P1206L 0.32 deleterious_low_confidence(0) benign(0.003) TCGA-EB-A4XL-01 7 142111499 142111499 G A TRBV5-7 Silent p.F79F 0.36 TCGA-EB-A4XL-01 7 142197742 142197742 C T TRBV11-2 RNA 0.41 TCGA-EB-A4XL-01 7 142564759 142564759 G A EPHB6 Silent p.R561R 0.45 TCGA-EB-A4XL-01 7 14620503 14620503 G A DGKB Silent p.C532C 0.31 TCGA-EB-A4XL-01 7 148801553 148801553 G A ZNF425 Silent p.F470F 0.37 TCGA-EB-A4XL-01 7 154863220 154863220 C T HTR5A Missense_Mutation p.S204F 0.42 deleterious(0) probably_damaging(0.987) TCGA-EB-A4XL-01 7 158896490 158896490 G A VIPR2 Silent p.F105F 0.38 TCGA-EB-A4XL-01 7 17373552 17373552 G A AHR Missense_Mutation p.G241E 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 7 20766748 20766748 T G ABCB5 Missense_Mutation p.L904R 0.38 deleterious(0) probably_damaging(0.997) TCGA-EB-A4XL-01 7 2473535 2473535 T G CHST12 3'UTR 0.14 TCGA-EB-A4XL-01 7 26883681 26883681 C T SKAP2 Missense_Mutation p.R92Q 0.38 tolerated(0.29) benign(0.317) TCGA-EB-A4XL-01 7 27185451 27185451 G A HOXA6 Silent p.F176F 0.40 TCGA-EB-A4XL-01 7 31904654 31904654 C T PDE1C Missense_Mutation p.V278M 0.48 tolerated(0.08) possibly_damaging(0.474) TCGA-EB-A4XL-01 7 55268104 55268104 C T EGFR Nonsense_Mutation p.Q982* 0.48 TCGA-EB-A4XL-01 7 57188819 57188819 C T ZNF479 Silent p.Q101Q 0.33 TCGA-EB-A4XL-01 7 64639780 64639780 G A INTS4L1 RNA 0.17 TCGA-EB-A4XL-01 7 75034278 75034278 A G TRIM73 Missense_Mutation p.T218A 0.39 tolerated(0.84) benign(0.003) TCGA-EB-A4XL-01 7 8126141 8126141 C T GLCCI1 Silent p.I539I 0.41 TCGA-EB-A4XL-01 7 86415978 86415978 C T GRM3 Silent p.R290R 0.41 TCGA-EB-A4XL-01 7 86825970 86825970 G A TMEM243 Silent p.F113F 0.39 TCGA-EB-A4XL-01 7 8790976 8790976 G A NXPH1 Silent p.V131V 0.37 TCGA-EB-A4XL-01 7 93090193 93090193 C T CALCR Missense_Mutation p.M230I 0.37 tolerated(1) benign(0.004) TCGA-EB-A4XL-01 7 99063768 99063768 G A ATP5J2 5'UTR 0.42 TCGA-EB-A4XL-01 7 99578383 99578383 C T AZGP1 5'Flank 0.36 TCGA-EB-A4XL-01 8 101563346 101563346 C T ANKRD46 Intron 0.40 TCGA-EB-A4XL-01 8 101563347 101563347 C T ANKRD46 Intron 0.40 TCGA-EB-A4XL-01 8 10390533 10390533 A T PRSS55 Missense_Mutation p.K239M 0.33 tolerated(0.06) benign(0.268) TCGA-EB-A4XL-01 8 10468816 10468816 C T RP1L1 Missense_Mutation p.G931E 0.30 possibly_damaging(0.697) TCGA-EB-A4XL-01 8 10755738 10755738 T C XKR6 Silent p.Q550Q 0.41 TCGA-EB-A4XL-01 8 110980337 110980337 C T KCNV1 Missense_Mutation p.G495R 0.50 deleterious(0) possibly_damaging(0.893) TCGA-EB-A4XL-01 8 11188893 11188893 C T SLC35G5 Missense_Mutation p.P93L 0.04 deleterious(0.01) probably_damaging(1) TCGA-EB-A4XL-01 8 11415477 11415477 T C BLK Missense_Mutation p.L320P 0.33 deleterious(0) probably_damaging(0.98) TCGA-EB-A4XL-01 8 120116050 120116050 G A COLEC10 Missense_Mutation p.D120N 0.37 tolerated(0.05) probably_damaging(1) TCGA-EB-A4XL-01 8 121293252 121293252 C T COL14A1 Missense_Mutation p.P1260S 0.43 tolerated(0.53) benign(0.008) TCGA-EB-A4XL-01 8 133182647 133182647 G A KCNQ3 Missense_Mutation p.P390L 0.30 tolerated(0.38) benign(0.014) TCGA-EB-A4XL-01 8 133182648 133182648 G A KCNQ3 Missense_Mutation p.P390S 0.27 tolerated(0.69) benign(0.014) TCGA-EB-A4XL-01 8 139144933 139144933 T C FAM135B Missense_Mutation p.N1375S 0.35 deleterious(0) possibly_damaging(0.884) TCGA-EB-A4XL-01 8 139838948 139838948 C T COL22A1 Missense_Mutation p.E308K 0.38 unknown(0) TCGA-EB-A4XL-01 8 144940786 144940786 C T EPPK1 Silent p.E2212E 0.34 TCGA-EB-A4XL-01 8 145101540 145101540 C T SPATC1 Missense_Mutation p.P487S 0.33 tolerated(0.1) probably_damaging(0.983) TCGA-EB-A4XL-01 8 145649123 145649123 G A VPS28 3'UTR 0.27 TCGA-EB-A4XL-01 8 17169094 17169094 C T MTMR7 Missense_Mutation p.D343N 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 8 18257978 18257978 G A NAT2 Silent p.E155E 0.52 TCGA-EB-A4XL-01 8 30948416 30948416 C T WRN Missense_Mutation p.S596F 0.44 deleterious(0) probably_damaging(0.988) TCGA-EB-A4XL-01 8 36766833 36766833 G A KCNU1 Missense_Mutation p.R704Q 0.32 tolerated(0.05) probably_damaging(0.944) TCGA-EB-A4XL-01 8 37720287 37720287 G A RAB11FIP1 3'UTR 0.26 TCGA-EB-A4XL-01 8 39142340 39142340 G A ADAM32 3'UTR 0.32 TCGA-EB-A4XL-01 8 42587626 42587626 G A CHRNB3 Silent p.L392L 0.39 TCGA-EB-A4XL-01 8 53071483 53071483 T C ST18 Missense_Mutation p.N594S 0.43 tolerated(0.35) benign(0.052) TCGA-EB-A4XL-01 8 61764632 61764632 C T CHD7 Missense_Mutation p.S1907L 0.32 probably_damaging(0.983) TCGA-EB-A4XL-01 8 6793414 6793414 C T DEFA4 3'UTR 0.33 TCGA-EB-A4XL-01 8 70501331 70501331 C T SULF1 Missense_Mutation p.S230L 0.31 deleterious(0) benign(0.445) TCGA-EB-A4XL-01 8 73480016 73480016 C T KCNB2 Missense_Mutation p.S16L 0.18 deleterious(0.04) benign(0.116) TCGA-EB-A4XL-01 8 77767768 77767768 C T ZFHX4 Missense_Mutation p.P2871S 0.47 possibly_damaging(0.778) TCGA-EB-A4XL-01 8 88886083 88886083 G A DCAF4L2 Silent p.F39F 0.42 TCGA-EB-A4XL-01 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.37 deleterious(0.03) benign(0.185) TCGA-EB-A4XL-01 8 95262514 95262514 G A GEM 3'UTR 0.54 TCGA-EB-A4XL-01 9 101797333 101797333 G A COL15A1 Missense_Mutation p.G706E 0.68 deleterious(0) probably_damaging(0.999) TCGA-EB-A4XL-01 9 104357266 104357266 C T PPP3R2 5'UTR 0.56 TCGA-EB-A4XL-01 9 104433302 104433302 G A GRIN3A Silent p.F464F 0.61 TCGA-EB-A4XL-01 9 113173608 113173608 C T SVEP1 Missense_Mutation p.R2128K 0.62 benign(0.118) TCGA-EB-A4XL-01 9 113276376 113276376 C T SVEP1 Silent p.S325S 0.80 TCGA-EB-A4XL-01 9 136208418 136208418 G A MED22 Silent p.P180P 0.67 TCGA-EB-A4XL-01 9 136208419 136208419 G A MED22 Missense_Mutation p.P180L 0.67 tolerated_low_confidence(0.07) benign(0.021) TCGA-EB-A4XL-01 9 139313516 139313516 C T PMPCA Silent p.I407I 0.54 TCGA-EB-A4XL-01 9 27109405 27109405 C T TEK 5'UTR 0.75 TCGA-EB-A4XL-01 9 27359173 27359173 C T MOB3B Silent p.R160R 0.58 TCGA-EB-A4XL-01 9 33798588 33798588 G A PRSS3 Missense_Mutation p.G244S 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A4XL-01 9 368195 368195 C T DOCK8 Intron 0.58 TCGA-EB-A4XL-01 9 74485004 74485004 G A ABHD17B Silent p.F214F 0.72 TCGA-EB-A4XL-01 9 8486293 8486293 G A PTPRD Nonsense_Mutation p.Q842* 0.79 TCGA-EB-A4XL-01 9 93650119 93650119 G A SYK Missense_Mutation p.S557N 0.67 deleterious(0) probably_damaging(0.998) TCGA-EB-A4XL-01 9 97367781 97367781 C T FBP1 Silent p.G261G 0.50 TCGA-EB-A4XL-01 X 101857201 101857201 G A ARMCX5 Silent p.L44L 0.40 TCGA-EB-A4XL-01 X 114536577 114536577 G A LUZP4 Missense_Mutation p.E38K 0.34 tolerated(1) benign(0.001) TCGA-EB-A4XL-01 X 115304612 115304612 C T AGTR2 Missense_Mutation p.T360I 0.37 deleterious(0.05) benign(0.141) TCGA-EB-A4XL-01 X 118230490 118230490 A T KIAA1210 Missense_Mutation p.N411K 0.45 deleterious(0.01) possibly_damaging(0.723) TCGA-EB-A4XL-01 X 118767428 118767428 C T SEPT6 Silent p.R328R 0.38 TCGA-EB-A4XL-01 X 128630798 128630798 C T SMARCA1 Missense_Mutation p.E519K 0.40 deleterious(0) possibly_damaging(0.858) TCGA-EB-A4XL-01 X 129201019 129201019 C T ELF4 Missense_Mutation p.E557K 0.38 tolerated(0.06) probably_damaging(0.985) TCGA-EB-A4XL-01 X 129201020 129201020 C T ELF4 Missense_Mutation p.M556I 0.38 tolerated(0.43) benign(0.009) TCGA-EB-A4XL-01 X 129498724 129498724 C T SLC25A14 Silent p.F239F 0.43 TCGA-EB-A4XL-01 X 129519128 129519128 C T GPR119 Silent p.L98L 0.38 TCGA-EB-A4XL-01 X 130222778 130222778 G A ARHGAP36 3'UTR 0.15 TCGA-EB-A4XL-01 X 132351902 132351902 G A TFDP3 Missense_Mutation p.S129F 0.31 deleterious(0) benign(0.414) TCGA-EB-A4XL-01 X 134033426 134033426 C T MOSPD1 Missense_Mutation p.G13E 0.48 deleterious(0.02) probably_damaging(1) TCGA-EB-A4XL-01 X 135431423 135431423 C T GPR112 Missense_Mutation p.S1853F 0.43 tolerated(0.47) benign(0.017) TCGA-EB-A4XL-01 X 150345295 150345295 G A GPR50 Silent p.A34A 0.35 TCGA-EB-A4XL-01 X 152807247 152807247 G A ATP2B3 Nonsense_Mutation p.W176* 0.35 TCGA-EB-A4XL-01 X 153129912 153129912 G A L1CAM Missense_Mutation p.L1063F 0.37 tolerated(0.5) benign(0.089) TCGA-EB-A4XL-01 X 153762566 153762566 G A G6PD Missense_Mutation p.L241F 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 X 154115752 154115752 G A F8A1 Missense_Mutation p.G368E 0.15 deleterious(0) probably_damaging(0.969) TCGA-EB-A4XL-01 X 154157927 154157927 C T F8 Missense_Mutation p.E1380K 0.40 tolerated(0.59) benign(0.001) TCGA-EB-A4XL-01 X 1761851 1761851 G A ASMT Missense_Mutation p.D356N 0.44 tolerated(0.41) benign(0.02) TCGA-EB-A4XL-01 X 3228588 3228588 G A MXRA5 Silent p.I2552I 0.26 TCGA-EB-A4XL-01 X 3235707 3235707 G A MXRA5 Silent p.H2005H 0.34 TCGA-EB-A4XL-01 X 44109674 44109674 C T EFHC2 Silent p.E208E 0.29 TCGA-EB-A4XL-01 X 51150200 51150200 G A CXorf67 Missense_Mutation p.G111E 0.41 tolerated(0.7) possibly_damaging(0.479) TCGA-EB-A4XL-01 X 53566684 53566684 G A HUWE1 Silent p.L3856L 0.25 TCGA-EB-A4XL-01 X 53674496 53674496 C T HUWE1 Missense_Mutation p.D56N 0.40 probably_damaging(0.987) TCGA-EB-A4XL-01 X 54836575 54836575 G A MAGED2 Missense_Mutation p.E156K 0.52 tolerated(0.14) benign(0.025) TCGA-EB-A4XL-01 X 54985298 54985298 C T PFKFB1 Missense_Mutation p.E149K 0.43 possibly_damaging(0.638) TCGA-EB-A4XL-01 X 55650545 55650545 C T FOXR2 Missense_Mutation p.S134F 0.33 deleterious(0.03) benign(0.142) TCGA-EB-A4XL-01 X 55650546 55650546 C T FOXR2 Silent p.S134S 0.32 TCGA-EB-A4XL-01 X 65427153 65427153 C T HEPH Missense_Mutation p.P857L 0.44 tolerated(0.11) benign(0.001) TCGA-EB-A4XL-01 X 70145565 70145565 C T SLC7A3 3'UTR 0.47 TCGA-EB-A4XL-01 X 73042197 73042197 G A XIST RNA 0.70 TCGA-EB-A4XL-01 X 77529009 77529009 G A CYSLTR1 Missense_Mutation p.R79C 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 X 79937584 79937584 C T BRWD3 Silent p.G1469G 0.33 TCGA-EB-A4XL-01 X 84526291 84526291 G A ZNF711 Silent p.L581L 0.29 TCGA-EB-A4XL-01 X 84526770 84526770 G A ZNF711 Missense_Mutation p.G741E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 X 84534345 84534345 G A POF1B 3'UTR 0.35 TCGA-EB-A4XL-01 X 91133572 91133572 A T PCDH11X Missense_Mutation p.N778I 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A4XL-01 X 92965324 92965324 C T FAM133A 3'UTR 0.36 TCGA-EB-A4XL-01 X 92965325 92965325 T C FAM133A 3'UTR 0.36 TCGA-EB-A51B-01 10 100150648 100150648 G A PYROXD2 Intron 0.71 TCGA-EB-A51B-01 10 100150649 100150649 G A PYROXD2 Intron 0.72 TCGA-EB-A51B-01 10 102676443 102676443 C T FAM178A Missense_Mutation p.P101S 0.69 tolerated(0.13) benign(0.009) TCGA-EB-A51B-01 10 102676444 102676444 C T FAM178A Missense_Mutation p.P101L 0.69 tolerated(0.15) benign(0.005) TCGA-EB-A51B-01 10 126681793 126681793 G A CTBP2 Silent p.T879T 0.78 TCGA-EB-A51B-01 10 15639226 15639226 G A ITGA8 Missense_Mutation p.P731S 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 10 27431336 27431336 G A YME1L1 Missense_Mutation p.S194L 0.30 tolerated(0.14) benign(0.015) TCGA-EB-A51B-01 10 28420536 28420536 C T MPP7 Missense_Mutation p.E134K 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-EB-A51B-01 10 31138976 31138976 G A ZNF438 Missense_Mutation p.P120S 0.54 deleterious(0) probably_damaging(0.999) TCGA-EB-A51B-01 10 35858128 35858128 C T CCNY 3'UTR 0.46 TCGA-EB-A51B-01 10 50854713 50854713 C T CHAT Missense_Mutation p.S425F 0.21 deleterious(0) probably_damaging(0.987) TCGA-EB-A51B-01 10 50854714 50854714 C T CHAT Silent p.S425S 0.19 TCGA-EB-A51B-01 10 5435839 5435839 C T TUBAL3 Missense_Mutation p.G328R 0.24 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EB-A51B-01 10 61007318 61007318 G A FAM13C 3'UTR 0.23 TCGA-EB-A51B-01 10 61829835 61829835 G A ANK3 Missense_Mutation p.P3602S 0.30 probably_damaging(0.992) TCGA-EB-A51B-01 10 96114846 96114846 G A NOC3L Silent p.I190I 0.37 TCGA-EB-A51B-01 11 1017260 1017260 C T MUC6 Silent p.L1847L 0.10 TCGA-EB-A51B-01 11 102195891 102195891 G A BIRC3 Silent p.P217P 0.25 TCGA-EB-A51B-01 11 1026071 1026071 C T MUC6 Missense_Mutation p.E873K 0.67 unknown(0) TCGA-EB-A51B-01 11 102824935 102824935 C T MMP13 Missense_Mutation p.G196E 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 11 10585833 10585833 C T LYVE1 Silent p.K58K 0.36 TCGA-EB-A51B-01 11 108788771 108788771 T C DDX10 Intron 0.54 TCGA-EB-A51B-01 11 118133256 118133256 C T MPZL2 Nonsense_Mutation p.W111* 0.10 TCGA-EB-A51B-01 11 119146716 119146716 C T CBL Silent p.F293F 0.21 TCGA-EB-A51B-01 11 119146717 119146717 C T CBL Missense_Mutation p.R294W 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 11 3069176 3069176 G A CARS Silent p.A27A 0.52 TCGA-EB-A51B-01 11 3069177 3069177 G A CARS Missense_Mutation p.A27V 0.52 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-EB-A51B-01 11 47370021 47370021 G A MYBPC3 Silent p.S242S 0.28 TCGA-EB-A51B-01 11 5153195 5153195 G A OR52A5 Silent p.I226I 0.29 TCGA-EB-A51B-01 11 5254151 5254151 G A HBD 3'UTR 0.31 TCGA-EB-A51B-01 11 5344541 5344541 C T OR51B2 3'UTR 0.36 TCGA-EB-A51B-01 11 55136139 55136139 G A OR4A15 Silent p.G260G 0.56 TCGA-EB-A51B-01 11 55579229 55579229 G A OR5L1 Missense_Mutation p.G96E 0.23 tolerated(0.16) benign(0.023) TCGA-EB-A51B-01 11 57982862 57982862 G A OR1S1 Missense_Mutation p.G216S 0.72 deleterious(0.01) probably_damaging(1) TCGA-EB-A51B-01 11 62346358 62346358 C T TUT1 Missense_Mutation p.E317K 0.21 deleterious(0.01) possibly_damaging(0.628) TCGA-EB-A51B-01 11 62592809 62592809 C T STX5 Silent p.S181S 0.59 TCGA-EB-A51B-01 11 6265620 6265620 G A CNGA4 Missense_Mutation p.G570E 0.53 deleterious_low_confidence(0) benign(0.06) TCGA-EB-A51B-01 11 62761058 62761058 C T SLC22A8 Missense_Mutation p.G456E 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 11 64338484 64338484 G A SLC22A11 Silent p.E541E 0.21 TCGA-EB-A51B-01 11 65048559 65048559 G A POLA2 Missense_Mutation p.G281S 0.29 deleterious(0) possibly_damaging(0.633) TCGA-EB-A51B-01 11 65048560 65048560 G A POLA2 Missense_Mutation p.G281D 0.26 deleterious(0) probably_damaging(0.961) TCGA-EB-A51B-01 11 65715137 65715137 G A TSGA10IP RNA 0.43 TCGA-EB-A51B-01 11 65819825 65819825 C T SF3B2 5'UTR 0.46 TCGA-EB-A51B-01 11 7111429 7111429 C T RBMXL2 Missense_Mutation p.P360S 0.50 deleterious(0.03) unknown(0) TCGA-EB-A51B-01 11 71725702 71725702 G A NUMA1 Silent p.P949P 0.52 TCGA-EB-A51B-01 11 723339 723339 C T EPS8L2 Silent p.S480S 0.25 TCGA-EB-A51B-01 11 799411 799411 G A PIDD Missense_Mutation p.R877C 0.52 deleterious(0.02) benign(0.021) TCGA-EB-A51B-01 11 799412 799412 G C PIDD Silent p.G876G 0.54 TCGA-EB-A51B-01 11 82875408 82875408 C T PCF11 Silent p.L223L 0.38 TCGA-EB-A51B-01 12 109876413 109876413 G A MYO1H Missense_Mutation p.R745Q 0.43 tolerated(0.93) benign(0) TCGA-EB-A51B-01 12 10999652 10999652 G A PRR4 3'UTR 0.24 TCGA-EB-A51B-01 12 110206421 110206421 C T FAM222A Silent p.S229S 0.36 TCGA-EB-A51B-01 12 113379623 113379623 G A OAS3 Missense_Mutation p.M142I 0.45 tolerated(0.13) benign(0.003) TCGA-EB-A51B-01 12 113379624 113379624 G A OAS3 Missense_Mutation p.D143N 0.45 tolerated(0.1) probably_damaging(0.999) TCGA-EB-A51B-01 12 113534765 113534765 C T DTX1 3'UTR 0.47 TCGA-EB-A51B-01 12 113825624 113825624 C T PLBD2 Silent p.I505I 0.36 TCGA-EB-A51B-01 12 118293376 118293376 G A KSR2 Missense_Mutation p.S110F 0.77 deleterious(0.04) benign(0.089) TCGA-EB-A51B-01 12 120198756 120198756 C T CIT Missense_Mutation p.S803N 0.34 deleterious(0.01) benign(0.066) TCGA-EB-A51B-01 12 122691368 122691368 C T B3GNT4 Silent p.F190F 0.25 TCGA-EB-A51B-01 12 122745979 122745979 G A VPS33A Silent p.G104G 0.29 TCGA-EB-A51B-01 12 122757566 122757566 C T CLIP1 Silent p.E1391E 0.39 TCGA-EB-A51B-01 12 123476369 123476369 G A PITPNM2 Intron 0.44 TCGA-EB-A51B-01 12 126138367 126138367 G A TMEM132B Missense_Mutation p.G783E 0.47 deleterious(0) possibly_damaging(0.895) TCGA-EB-A51B-01 12 133306513 133306513 T C ANKLE2 Silent p.G745G 0.20 TCGA-EB-A51B-01 12 13717143 13717143 G A GRIN2B Missense_Mutation p.P1010L 0.18 tolerated(0.15) benign(0.055) TCGA-EB-A51B-01 12 14766098 14766098 C T GUCY2C Missense_Mutation p.E1059K 0.26 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-EB-A51B-01 12 18435655 18435655 C T PIK3C2G Missense_Mutation p.P214S 0.44 deleterious(0.02) possibly_damaging(0.863) TCGA-EB-A51B-01 12 18435661 18435661 A T PIK3C2G Missense_Mutation p.M216L 0.42 tolerated(0.2) benign(0.003) TCGA-EB-A51B-01 12 18854584 18854584 C T PLCZ1 Intron 0.32 TCGA-EB-A51B-01 12 1994045 1994045 G A CACNA2D4 Silent p.F387F 0.40 TCGA-EB-A51B-01 12 2797713 2797713 G A CACNA1C Missense_Mutation p.R2010Q 0.46 tolerated_low_confidence(0.26) benign(0.001) TCGA-EB-A51B-01 12 2797854 2797854 G A CACNA1C Missense_Mutation p.R2057Q 0.15 tolerated_low_confidence(0.08) benign(0.016) TCGA-EB-A51B-01 12 32977045 32977045 G A PKP2 Silent p.D580D 0.16 TCGA-EB-A51B-01 12 33003729 33003729 C T PKP2 Missense_Mutation p.R450K 0.46 tolerated(0.14) benign(0.05) TCGA-EB-A51B-01 12 45742035 45742035 G A ANO6 Silent p.R211R 0.50 TCGA-EB-A51B-01 12 4736410 4736410 G A AKAP3 Missense_Mutation p.A553V 0.43 tolerated(0.08) probably_damaging(1) TCGA-EB-A51B-01 12 49416624 49416624 C T KMT2D Missense_Mutation p.A5363T 0.38 unknown(0) TCGA-EB-A51B-01 12 49416625 49416625 C T KMT2D Silent p.K5362K 0.37 TCGA-EB-A51B-01 12 5020886 5020886 C T KCNA1 Silent p.S114S 0.46 TCGA-EB-A51B-01 12 50358804 50358804 G A AQP5 Silent p.A214A 0.21 TCGA-EB-A51B-01 12 53207986 53207986 C T KRT4 5'UTR 0.44 TCGA-EB-A51B-01 12 53679970 53679970 C T ESPL1 Silent p.L1150L 0.29 TCGA-EB-A51B-01 12 55714832 55714832 C T OR6C1 Missense_Mutation p.S150L 0.44 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EB-A51B-01 12 56397982 56397982 C T SUOX Missense_Mutation p.S270F 0.38 deleterious(0) probably_damaging(0.92) TCGA-EB-A51B-01 12 57881750 57881750 C T MARS 5'UTR 0.33 TCGA-EB-A51B-01 12 64746774 64746774 G A C12orf56 Silent p.I105I 0.30 TCGA-EB-A51B-01 12 6666540 6666540 G A NOP2 Silent p.A719A 0.42 TCGA-EB-A51B-01 12 6666541 6666541 G A NOP2 Missense_Mutation p.A719V 0.43 tolerated_low_confidence(0.06) benign(0.248) TCGA-EB-A51B-01 12 70729308 70729308 C T CNOT2 Missense_Mutation p.P247L 0.35 tolerated(0.08) probably_damaging(0.963) TCGA-EB-A51B-01 12 70933765 70933765 G A PTPRB Missense_Mutation p.R1878C 0.33 deleterious(0) probably_damaging(0.944) TCGA-EB-A51B-01 12 7531843 7531843 C T CD163L1 Missense_Mutation p.G701E 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 12 7842881 7842881 G A GDF3 Missense_Mutation p.H230Y 0.37 tolerated(0.51) possibly_damaging(0.697) TCGA-EB-A51B-01 12 7900051 7900051 C T CLEC4C 5'UTR 0.15 TCGA-EB-A51B-01 12 7900052 7900052 C T CLEC4C 5'UTR 0.17 TCGA-EB-A51B-01 12 79813085 79813085 T C SYT1 Intron 0.50 TCGA-EB-A51B-01 12 82070581 82070581 C T PPFIA2 Missense_Mutation p.A98T 0.52 tolerated_low_confidence(0.44) benign(0.003) TCGA-EB-A51B-01 12 82070582 82070582 C T PPFIA2 Silent p.G97G 0.52 TCGA-EB-A51B-01 13 113873280 113873280 C T CUL4A Missense_Mutation p.H96Y 0.28 tolerated(0.24) benign(0.001) TCGA-EB-A51B-01 13 20279857 20279857 C T PSPC1 Missense_Mutation p.G444E 0.17 deleterious(0.01) possibly_damaging(0.559) TCGA-EB-A51B-01 13 24895747 24895747 G A C1QTNF9 Missense_Mutation p.M281I 0.30 tolerated(0.38) benign(0.048) TCGA-EB-A51B-01 13 25744578 25744578 G A AMER2 Missense_Mutation p.P394S 0.35 tolerated(0.39) possibly_damaging(0.755) TCGA-EB-A51B-01 13 26402277 26402277 G A ATP8A2 Missense_Mutation p.G901R 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A51B-01 13 33629422 33629422 T G KL Missense_Mutation p.F523L 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-EB-A51B-01 13 37014201 37014201 A G CCNA1 Missense_Mutation p.M327V 0.11 deleterious(0) probably_damaging(0.997) TCGA-EB-A51B-01 13 39588584 39588584 A G PROSER1 Missense_Mutation p.S269P 0.36 tolerated(0.08) benign(0.076) TCGA-EB-A51B-01 13 43537421 43537421 G A EPSTI1 Silent p.L153L 0.18 TCGA-EB-A51B-01 13 43788061 43788061 C T ENOX1 3'UTR 0.33 TCGA-EB-A51B-01 13 47354130 47354130 G A ESD Silent p.L180L 0.44 TCGA-EB-A51B-01 14 102898342 102898342 G A TECPR2 Missense_Mutation p.E432K 0.21 deleterious(0.04) possibly_damaging(0.579) TCGA-EB-A51B-01 14 104206763 104206763 C T PPP1R13B Missense_Mutation p.E664K 0.22 deleterious(0) probably_damaging(0.953) TCGA-EB-A51B-01 14 106053636 106053636 G A IGHA2 Missense_Mutation p.P221S 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A51B-01 14 106926406 106926406 A C IGHV3-43 Missense_Mutation p.F46V 0.08 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-EB-A51B-01 14 20483180 20483180 G A OR4K14 Missense_Mutation p.S58F 0.52 deleterious_low_confidence(0.01) benign(0.053) TCGA-EB-A51B-01 14 24729186 24729186 G A TGM1 Missense_Mutation p.T279I 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A51B-01 14 32561993 32561993 C T ARHGAP5 Silent p.S706S 0.59 TCGA-EB-A51B-01 14 60212602 60212602 G A RTN1 Missense_Mutation p.P280L 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 14 62199181 62199181 C T HIF1A Silent p.R297R 0.22 TCGA-EB-A51B-01 14 64522739 64522739 C T SYNE2 Silent p.S3274S 0.12 TCGA-EB-A51B-01 14 67664905 67664905 C T FAM71D Silent p.T9T 0.53 TCGA-EB-A51B-01 14 72139205 72139205 G A SIPA1L1 Silent p.Q990Q 0.56 TCGA-EB-A51B-01 14 74035839 74035839 G C ACOT2 5'UTR 0.31 TCGA-EB-A51B-01 14 92278766 92278766 G A TC2N Missense_Mutation p.S64F 0.18 deleterious(0) probably_damaging(0.921) TCGA-EB-A51B-01 14 94754734 94754734 C T SERPINA10 Missense_Mutation p.G294E 0.28 deleterious(0) probably_damaging(0.958) TCGA-EB-A51B-01 14 94756836 94756836 G T SERPINA10 Missense_Mutation p.P32Q 0.25 tolerated(0.65) benign(0.126) TCGA-EB-A51B-01 14 94844687 94844687 T A SERPINA1 3'UTR 0.50 TCGA-EB-A51B-01 14 96152926 96152926 C T TCL1B Missense_Mutation p.P41L 0.56 tolerated(0.1) probably_damaging(0.948) TCGA-EB-A51B-01 14 97022679 97022679 C T PAPOLA Missense_Mutation p.P645S 0.53 tolerated(0.25) possibly_damaging(0.573) TCGA-EB-A51B-01 15 100214652 100214652 C T MEF2A Missense_Mutation p.P151S 0.34 tolerated(0.08) probably_damaging(0.986) TCGA-EB-A51B-01 15 102515249 102515249 C T WASH3P 3'Flank 0.36 TCGA-EB-A51B-01 15 102515250 102515250 C T WASH3P 3'Flank 0.36 TCGA-EB-A51B-01 15 24924383 24924383 C G NPAP1 Missense_Mutation p.I1123M 0.19 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-EB-A51B-01 15 25221517 25221517 G A SNRPN Missense_Mutation p.G74E 0.18 deleterious(0) probably_damaging(0.999) TCGA-EB-A51B-01 15 40595557 40595557 C T PLCB2 Missense_Mutation p.E55K 0.44 deleterious(0) probably_damaging(0.994) TCGA-EB-A51B-01 15 41961969 41961969 C T MGA Missense_Mutation p.R293C 0.30 tolerated(0.05) benign(0.006) TCGA-EB-A51B-01 15 43621953 43621953 C G LCMT2 Silent p.L245L 0.12 TCGA-EB-A51B-01 15 43820849 43820849 G A MAP1A Nonsense_Mutation p.W2393* 0.30 TCGA-EB-A51B-01 15 43820850 43820850 G A MAP1A Nonsense_Mutation p.W2393* 0.30 TCGA-EB-A51B-01 15 78473277 78473277 C T ACSBG1 Missense_Mutation p.G358E 0.51 deleterious(0) probably_damaging(0.997) TCGA-EB-A51B-01 15 81173387 81173387 G A KIAA1199 Missense_Mutation p.G176E 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-EB-A51B-01 16 20337739 20337739 C T GP2 Missense_Mutation p.M5I 0.30 tolerated_low_confidence(0.2) benign(0.023) TCGA-EB-A51B-01 16 20974934 20974934 G A DNAH3 Silent p.V3424V 0.49 TCGA-EB-A51B-01 16 2284186 2284186 G A E4F1 Missense_Mutation p.A464T 0.19 tolerated(0.61) benign(0.002) TCGA-EB-A51B-01 16 26147552 26147552 G A HS3ST4 Missense_Mutation p.E452K 0.44 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EB-A51B-01 16 27374335 27374335 C T IL4R Silent p.L554L 0.46 TCGA-EB-A51B-01 16 2809610 2809610 C T SRRM2 Missense_Mutation p.H261Y 0.26 unknown(0) TCGA-EB-A51B-01 16 28877437 28877437 G A SH2B1 Missense_Mutation p.E8K 0.42 tolerated_low_confidence(0.11) probably_damaging(0.958) TCGA-EB-A51B-01 16 29675047 29675047 G A SPN 5'UTR 0.41 TCGA-EB-A51B-01 16 29906596 29906596 G A SEZ6L2 Silent p.F279F 0.38 TCGA-EB-A51B-01 16 30535828 30535828 G T ZNF768 3'UTR 0.48 TCGA-EB-A51B-01 16 31155072 31155072 C T PRSS36 Silent p.R269R 0.39 TCGA-EB-A51B-01 16 3254288 3254288 C T OR1F1 Silent p.L14L 0.55 TCGA-EB-A51B-01 16 33020504 33020504 T A IGHV3OR16-8 Missense_Mutation p.F3L 0.38 tolerated_low_confidence(0.61) benign(0.005) TCGA-EB-A51B-01 16 3349348 3349348 T A TIGD7 Missense_Mutation p.I423F 0.34 tolerated(0.24) benign(0.282) TCGA-EB-A51B-01 16 3801795 3801795 A C CREBBP Missense_Mutation p.C1237W 0.22 unknown(0) TCGA-EB-A51B-01 16 48264362 48264362 G A ABCC11 Silent p.F74F 0.50 TCGA-EB-A51B-01 16 49670603 49670603 G A ZNF423 Silent p.I820I 0.44 TCGA-EB-A51B-01 16 54319238 54319238 G A IRX3 Silent p.L185L 0.38 TCGA-EB-A51B-01 16 57509054 57509054 C T DOK4 Missense_Mutation p.E123K 0.42 deleterious(0.01) benign(0.174) TCGA-EB-A51B-01 16 66974223 66974223 C T CES2 Silent p.I238I 0.42 TCGA-EB-A51B-01 16 67188513 67188513 G A TRADD 3'UTR 0.40 TCGA-EB-A51B-01 16 67701324 67701324 G T C16orf86 Silent p.G76G 0.42 TCGA-EB-A51B-01 16 71218876 71218876 G A HYDIN Silent p.F51F 0.38 TCGA-EB-A51B-01 16 72153074 72153074 G A PMFBP1 3'UTR 0.22 TCGA-EB-A51B-01 16 8906921 8906921 C G PMM2 Missense_Mutation p.D199E 0.17 tolerated(0.85) benign(0.004) TCGA-EB-A51B-01 16 89253873 89253873 G A CDH15 Missense_Mutation p.D234N 0.43 deleterious(0.01) probably_damaging(0.938) TCGA-EB-A51B-01 16 89293871 89293871 C T ZNF778 Missense_Mutation p.P364L 0.23 deleterious(0) benign(0.012) TCGA-EB-A51B-01 16 89712948 89712948 G A CHMP1A Nonsense_Mutation p.Q186* 0.58 TCGA-EB-A51B-01 16 89712949 89712949 G A CHMP1A Silent p.D185D 0.55 TCGA-EB-A51B-01 17 10305102 10305102 C T MYH8 Missense_Mutation p.E897K 0.47 deleterious(0) benign(0.333) TCGA-EB-A51B-01 17 18023201 18023201 C T MYO15A Missense_Mutation p.P363S 0.26 possibly_damaging(0.641) TCGA-EB-A51B-01 17 21318657 21318657 G A KCNJ12 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-EB-A51B-01 17 26731913 26731913 C T SLC46A1 Missense_Mutation p.A268T 0.47 tolerated(0.2) probably_damaging(1) TCGA-EB-A51B-01 17 3030377 3030377 G A OR1G1 Missense_Mutation p.L157F 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A51B-01 17 3119569 3119569 C T OR1A1 Nonsense_Mutation p.R219* 0.31 TCGA-EB-A51B-01 17 39019439 39019439 C A KRT12 Missense_Mutation p.V418F 0.38 deleterious(0) possibly_damaging(0.903) TCGA-EB-A51B-01 17 40476813 40476813 C T STAT3 Missense_Mutation p.E506K 0.54 tolerated(0.08) possibly_damaging(0.646) TCGA-EB-A51B-01 17 41020246 41020246 C A AOC4P RNA 0.30 TCGA-EB-A51B-01 17 43473887 43473887 G A ARHGAP27 Silent p.F372F 0.33 TCGA-EB-A51B-01 17 4462026 4462026 C T GGT6 Missense_Mutation p.A256T 0.54 tolerated(0.05) possibly_damaging(0.739) TCGA-EB-A51B-01 17 46655253 46655253 G A HOXB4 Silent p.P143P 0.24 TCGA-EB-A51B-01 17 46655254 46655254 G A HOXB4 Missense_Mutation p.P143L 0.24 deleterious(0) probably_damaging(0.994) TCGA-EB-A51B-01 17 4876996 4876996 G A CAMTA2 Silent p.S718S 0.43 TCGA-EB-A51B-01 17 4876997 4876997 G T CAMTA2 Missense_Mutation p.S718Y 0.43 tolerated(0.46) benign(0.003) TCGA-EB-A51B-01 17 55196373 55196373 C T AKAP1 Silent p.L869L 0.48 TCGA-EB-A51B-01 17 62025334 62025334 C T SCN4A Missense_Mutation p.M1078I 0.45 tolerated(0.18) benign(0.001) TCGA-EB-A51B-01 17 72310316 72310316 G A DNAI2 Silent p.G593G 0.23 TCGA-EB-A51B-01 17 7239897 7239897 C T ACAP1 5'UTR 0.62 TCGA-EB-A51B-01 17 7239898 7239898 C T ACAP1 5'UTR 0.62 TCGA-EB-A51B-01 17 73923544 73923544 G A FBF1 Missense_Mutation p.S142F 0.36 tolerated(0.05) benign(0.387) TCGA-EB-A51B-01 17 74004869 74004869 C T EVPL Missense_Mutation p.D1473N 0.38 tolerated(0.37) benign(0.007) TCGA-EB-A51B-01 17 74625272 74625272 C T ST6GALNAC1 Missense_Mutation p.G218E 0.23 benign(0.015) TCGA-EB-A51B-01 17 7467091 7467091 C T SENP3 Missense_Mutation p.P233L 0.32 tolerated(0.06) benign(0.026) TCGA-EB-A51B-01 17 76134190 76134190 C T TMC8 Missense_Mutation p.T485I 0.48 tolerated(0.13) benign(0.21) TCGA-EB-A51B-01 17 76134191 76134191 C T TMC8 Silent p.T485T 0.48 TCGA-EB-A51B-01 17 76450578 76450578 C T DNAH17 Silent p.L3446L 0.41 TCGA-EB-A51B-01 17 77705077 77705077 G A ENPP7 Missense_Mutation p.R59Q 0.31 tolerated(0.77) benign(0.036) TCGA-EB-A51B-01 17 77769860 77769860 A G CBX8 Missense_Mutation p.L81P 0.35 deleterious(0) probably_damaging(0.979) TCGA-EB-A51B-01 17 8170087 8170087 C T PFAS Silent p.F946F 0.20 TCGA-EB-A51B-01 18 14524956 14524956 C T POTEC Missense_Mutation p.E385K 0.41 deleterious(0.03) probably_damaging(0.952) TCGA-EB-A51B-01 18 21402330 21402330 C T LAMA3 Missense_Mutation p.P807S 0.45 benign(0.022) TCGA-EB-A51B-01 18 29102104 29102104 G A DSG2 Silent p.S194S 0.29 TCGA-EB-A51B-01 18 31538309 31538309 G T NOL4 Nonsense_Mutation p.S377* 0.33 TCGA-EB-A51B-01 18 52551645 52551645 C T RAB27B Silent p.F107F 0.27 TCGA-EB-A51B-01 18 55319798 55319798 C T ATP8B1 Missense_Mutation p.G1060E 0.31 tolerated(0.31) probably_damaging(0.985) TCGA-EB-A51B-01 18 65178580 65178580 G A DSEL Missense_Mutation p.S1099L 0.68 tolerated(0.22) benign(0.002) TCGA-EB-A51B-01 18 70417313 70417313 C T NETO1 Missense_Mutation p.D509N 0.25 deleterious_low_confidence(0.04) benign(0.107) TCGA-EB-A51B-01 18 72223684 72223684 C T CNDP1 Nonsense_Mutation p.Q46* 0.29 TCGA-EB-A51B-01 19 1466619 1466619 G A APC2 Missense_Mutation p.E1107K 0.62 benign(0.011) TCGA-EB-A51B-01 19 15547671 15547671 T A WIZ Missense_Mutation p.T159S 0.25 tolerated(1) benign(0.003) TCGA-EB-A51B-01 19 18649228 18649228 G A FKBP8 Silent p.P190P 0.52 TCGA-EB-A51B-01 19 1912852 1912852 C T ADAT3 Missense_Mutation p.P269L 0.09 tolerated(0.73) benign(0.01) TCGA-EB-A51B-01 19 23836315 23836315 G A ZNF675 Missense_Mutation p.H474Y 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-EB-A51B-01 19 24097750 24097750 G A ZNF726 5'UTR 0.59 TCGA-EB-A51B-01 19 2733148 2733148 G T SLC39A3 Silent p.V182V 0.52 TCGA-EB-A51B-01 19 33333084 33333084 C T SLC7A9 Missense_Mutation p.R405K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A51B-01 19 37879643 37879643 C A ZNF527 Missense_Mutation p.T231K 0.21 deleterious(0.04) benign(0.009) TCGA-EB-A51B-01 19 40364273 40364273 C T FCGBP Missense_Mutation p.G4790D 0.20 possibly_damaging(0.549) TCGA-EB-A51B-01 19 40487243 40487243 G A PSMC4 3'UTR 0.55 TCGA-EB-A51B-01 19 42265982 42265982 C T CEACAM6 Missense_Mutation p.S270F 0.19 tolerated(0.17) benign(0.39) TCGA-EB-A51B-01 19 43228175 43228175 G C PSG3 Missense_Mutation p.P416A 0.53 deleterious(0.02) benign(0.02) TCGA-EB-A51B-01 19 44276176 44276176 G A KCNN4 Silent p.I265I 0.28 TCGA-EB-A51B-01 19 44417708 44417708 A G ZNF45 Missense_Mutation p.L627P 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 19 48967701 48967701 C T KCNJ14 Silent p.L326L 0.37 TCGA-EB-A51B-01 19 49300256 49300256 G A BCAT2 Silent p.L288L 0.55 TCGA-EB-A51B-01 19 49536437 49536437 C T CGB2 Nonsense_Mutation p.R151* 0.25 TCGA-EB-A51B-01 19 52469126 52469126 G A ZNF350 Missense_Mutation p.P194S 0.41 tolerated(0.52) benign(0.146) TCGA-EB-A51B-01 19 53885788 53885788 C T ZNF525 3'UTR 0.28 TCGA-EB-A51B-01 19 53960288 53960288 G A ZNF761 RNA 0.60 TCGA-EB-A51B-01 19 54140172 54140172 C T DPRX Missense_Mutation p.S169F 0.47 deleterious(0.02) probably_damaging(0.936) TCGA-EB-A51B-01 19 54254480 54254480 C T MIR522 RNA 0.20 TCGA-EB-A51B-01 19 54401235 54401235 C T PRKCG Missense_Mutation p.S321F 0.24 deleterious(0.04) benign(0.396) TCGA-EB-A51B-01 19 54705103 54705103 G A RPS9 Silent p.R17R 0.28 TCGA-EB-A51B-01 19 54782907 54782907 C T LILRB2 Missense_Mutation p.E239K 0.41 tolerated(0.19) possibly_damaging(0.672) TCGA-EB-A51B-01 19 56369671 56369671 G A NLRP4 Silent p.E304E 0.25 TCGA-EB-A51B-01 19 56539582 56539582 G A NLRP5 Silent p.V661V 0.36 TCGA-EB-A51B-01 19 6707887 6707887 C T C3 Silent p.K633K 0.49 TCGA-EB-A51B-01 19 757839 757839 G A MISP Missense_Mutation p.R298H 0.50 deleterious(0) probably_damaging(0.998) TCGA-EB-A51B-01 19 7807776 7807776 C T CD209 3'UTR 0.30 TCGA-EB-A51B-01 19 7810970 7810970 G A CD209 Missense_Mutation p.S61F 0.51 tolerated(0.2) benign(0.024) TCGA-EB-A51B-01 19 8808658 8808658 G T ACTL9 Missense_Mutation p.L132M 0.39 tolerated(0.48) benign(0.076) TCGA-EB-A51B-01 1 103461570 103461570 C T COL11A1 Missense_Mutation p.G757E 0.14 unknown(0) TCGA-EB-A51B-01 1 109143272 109143272 C G FAM102B Missense_Mutation p.I74M 0.11 deleterious(0.03) possibly_damaging(0.798) TCGA-EB-A51B-01 1 110207689 110207689 G A GSTM4 3'Flank 0.37 TCGA-EB-A51B-01 1 110950446 110950446 T A LAMTOR5 Missense_Mutation p.S15C 0.51 tolerated_low_confidence(0.07) possibly_damaging(0.843) TCGA-EB-A51B-01 1 11103052 11103052 G A MASP2 Missense_Mutation p.P257S 0.35 deleterious(0) probably_damaging(0.981) TCGA-EB-A51B-01 1 114397107 114397107 A G PTPN22 Silent p.L246L 0.38 TCGA-EB-A51B-01 1 116574244 116574244 T C SLC22A15 Intron 0.35 TCGA-EB-A51B-01 1 12835260 12835260 G T PRAMEF12 Missense_Mutation p.G84W 0.49 deleterious(0) probably_damaging(0.998) TCGA-EB-A51B-01 1 142713770 142713770 C T RP11-417J8.6 RNA 0.41 TCGA-EB-A51B-01 1 145281472 145281472 C T NOTCH2NL Silent p.G134G 0.09 TCGA-EB-A51B-01 1 145537767 145537767 G A ITGA10 Missense_Mutation p.A869T 0.37 tolerated(0.37) benign(0.178) TCGA-EB-A51B-01 1 145763736 145763736 A C PDZK1 3'UTR 0.27 TCGA-EB-A51B-01 1 152128064 152128064 C T RPTN Missense_Mutation p.G504E 0.44 deleterious(0.04) benign(0.017) TCGA-EB-A51B-01 1 152280839 152280839 C T FLG Missense_Mutation p.G2175R 0.31 probably_damaging(0.953) TCGA-EB-A51B-01 1 153723631 153723631 C T INTS3 Silent p.L215L 0.42 TCGA-EB-A51B-01 1 157491023 157491023 C T FCRL5 Missense_Mutation p.D767N 0.43 deleterious(0.01) probably_damaging(1) TCGA-EB-A51B-01 1 159898665 159898665 C T IGSF9 Missense_Mutation p.G838E 0.40 tolerated(0.08) benign(0.206) TCGA-EB-A51B-01 1 160523894 160523894 G A CD84 Missense_Mutation p.S144F 0.35 tolerated(0.2) benign(0.119) TCGA-EB-A51B-01 1 160797708 160797708 C T LY9 3'UTR 0.35 TCGA-EB-A51B-01 1 160919934 160919934 G A ITLN2 Missense_Mutation p.S208L 0.38 tolerated(0.37) benign(0) TCGA-EB-A51B-01 1 161167923 161167923 C T ADAMTS4 Silent p.L165L 0.47 TCGA-EB-A51B-01 1 16458332 16458332 C T EPHA2 Missense_Mutation p.E787K 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 1 16458333 16458333 C T EPHA2 Silent p.P786P 0.47 TCGA-EB-A51B-01 1 165877113 165877113 G A UCK2 3'UTR 0.45 TCGA-EB-A51B-01 1 1687947 1687947 C T NADK Missense_Mutation p.R310Q 0.36 deleterious(0.05) benign(0.121) TCGA-EB-A51B-01 1 16901046 16901046 G A NBPF1 Silent p.V778V 0.18 TCGA-EB-A51B-01 1 170961341 170961341 G A MROH9 Silent p.Q355Q 0.28 TCGA-EB-A51B-01 1 179523730 179523730 C T AXDND1 3'UTR 0.45 TCGA-EB-A51B-01 1 180794456 180794456 C T XPR1 Silent p.S370S 0.42 TCGA-EB-A51B-01 1 180794457 180794457 C T XPR1 Missense_Mutation p.R371W 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 1 181687199 181687199 G A CACNA1E Missense_Mutation p.E512K 0.48 deleterious(0) possibly_damaging(0.621) TCGA-EB-A51B-01 1 183895505 183895505 C A RGL1 3'UTR 0.45 TCGA-EB-A51B-01 1 1848285 1848285 C T CALML6 Silent p.F116F 0.42 TCGA-EB-A51B-01 1 186072715 186072715 G A HMCN1 Nonsense_Mutation p.W3562* 0.41 TCGA-EB-A51B-01 1 186072717 186072717 A G HMCN1 Missense_Mutation p.M3563V 0.43 benign(0.086) TCGA-EB-A51B-01 1 19166502 19166502 G A TAS1R2 Missense_Mutation p.P704L 0.44 tolerated(0.06) possibly_damaging(0.651) TCGA-EB-A51B-01 1 196695999 196695999 C T CFH Missense_Mutation p.S722L 0.43 tolerated(0.17) benign(0.016) TCGA-EB-A51B-01 1 197404448 197404448 G A CRB1 Missense_Mutation p.G1152E 0.45 deleterious(0) probably_damaging(0.973) TCGA-EB-A51B-01 1 201338950 201338950 C T TNNT2 Intron 0.45 TCGA-EB-A51B-01 1 201859657 201859657 C T SHISA4 Silent p.F107F 0.42 TCGA-EB-A51B-01 1 204985602 204985602 G A NFASC Missense_Mutation p.E1220K 0.35 tolerated(0.16) unknown(0) TCGA-EB-A51B-01 1 20987847 20987847 C T DDOST Silent p.R16R 0.38 TCGA-EB-A51B-01 1 21175972 21175972 T C EIF4G3 Missense_Mutation p.E1225G 0.33 deleterious(0) probably_damaging(0.914) TCGA-EB-A51B-01 1 213170562 213170562 C T ANGEL2 Missense_Mutation p.R473Q 0.38 tolerated(0.14) benign(0.382) TCGA-EB-A51B-01 1 214815043 214815043 C T CENPF Missense_Mutation p.S1121F 0.38 benign(0.032) TCGA-EB-A51B-01 1 223567211 223567211 C T C1orf65 Missense_Mutation p.P132S 0.54 tolerated(0.28) benign(0.003) TCGA-EB-A51B-01 1 223567212 223567212 C T C1orf65 Missense_Mutation p.P132L 0.61 deleterious(0.05) benign(0.058) TCGA-EB-A51B-01 1 226109765 226109765 G A PYCR2 Silent p.F111F 0.48 TCGA-EB-A51B-01 1 232581477 232581477 C T SIPA1L2 Missense_Mutation p.G1051S 0.46 tolerated(0.47) probably_damaging(0.927) TCGA-EB-A51B-01 1 236920801 236920801 T C ACTN2 Missense_Mutation p.W724R 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 1 24201604 24201604 G A CNR2 Silent p.P168P 0.27 TCGA-EB-A51B-01 1 248685518 248685518 G A OR2G6 Missense_Mutation p.D191N 0.42 tolerated(0.11) possibly_damaging(0.776) TCGA-EB-A51B-01 1 248756835 248756835 G A OR2T10 Missense_Mutation p.P79S 0.39 deleterious(0) possibly_damaging(0.725) TCGA-EB-A51B-01 1 26142113 26142113 C T SEPN1 Silent p.F559F 0.43 TCGA-EB-A51B-01 1 26515384 26515384 C A CNKSR1 Missense_Mutation p.N604K 0.38 deleterious(0.01) possibly_damaging(0.717) TCGA-EB-A51B-01 1 26515385 26515385 C T CNKSR1 Nonsense_Mutation p.R605* 0.39 TCGA-EB-A51B-01 1 26644652 26644652 C G UBXN11 5'UTR 0.47 TCGA-EB-A51B-01 1 26737320 26737320 G A LIN28A 5'UTR 0.27 TCGA-EB-A51B-01 1 27190291 27190291 C T SFN Silent p.T196T 0.43 TCGA-EB-A51B-01 1 27239925 27239925 C T NR0B2 Silent p.L169L 0.31 TCGA-EB-A51B-01 1 27875792 27875792 G A AHDC1 Silent p.P945P 0.29 TCGA-EB-A51B-01 1 27875793 27875793 G A AHDC1 Missense_Mutation p.P945L 0.28 deleterious(0.02) possibly_damaging(0.851) TCGA-EB-A51B-01 1 28864356 28864356 C T RCC1 Missense_Mutation p.A399V 0.38 deleterious(0) benign(0.153) TCGA-EB-A51B-01 1 34663286 34663286 G A C1orf94 Missense_Mutation p.D261N 0.37 deleterious(0) benign(0.001) TCGA-EB-A51B-01 1 36921471 36921471 G C MRPS15 Missense_Mutation p.A231G 0.17 deleterious(0.02) benign(0.427) TCGA-EB-A51B-01 1 37325527 37325527 G A GRIK3 Missense_Mutation p.S293L 0.46 tolerated(0.26) benign(0.007) TCGA-EB-A51B-01 1 40777205 40777205 G A COL9A2 Silent p.T162T 0.34 TCGA-EB-A51B-01 1 42045924 42045924 G A HIVEP3 Silent p.L1515L 0.19 TCGA-EB-A51B-01 1 42880380 42880380 C T RIMKLA Missense_Mutation p.P304L 0.40 deleterious(0) possibly_damaging(0.613) TCGA-EB-A51B-01 1 45079876 45079876 C T RNF220 Missense_Mutation p.P222L 0.42 deleterious(0.01) probably_damaging(0.946) TCGA-EB-A51B-01 1 51778482 51778482 A G TTC39A Splice_Site p.X97_splice 0.42 TCGA-EB-A51B-01 1 67424567 67424567 G A MIER1 Missense_Mutation p.D179N 0.44 deleterious(0.04) possibly_damaging(0.573) TCGA-EB-A51B-01 20 20031117 20031118 CC TTT CRNKL1 Frame_Shift_Ins p.R228Kfs*5 0.09 TCGA-EB-A51B-01 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.15 deleterious_low_confidence(0) benign(0.022) TCGA-EB-A51B-01 20 29961031 29961031 G A DEFB118 3'UTR 0.43 TCGA-EB-A51B-01 20 30602748 30602748 C T CCM2L Silent p.A24A 0.14 TCGA-EB-A51B-01 20 31596457 31596457 T C BPIFB2 Missense_Mutation p.V26A 0.31 tolerated(0.14) possibly_damaging(0.885) TCGA-EB-A51B-01 20 31659972 31659972 C T BPIFB3 Silent p.N441N 0.12 TCGA-EB-A51B-01 20 42635286 42635286 G A TOX2 Missense_Mutation p.E89K 0.62 tolerated(0.11) benign(0.15) TCGA-EB-A51B-01 20 46256670 46256670 G A NCOA3 Silent p.L242L 0.28 TCGA-EB-A51B-01 20 47688942 47688942 C T CSE1L Silent p.A296A 0.25 TCGA-EB-A51B-01 20 5283383 5283383 C T PROKR2 Splice_Site p.X153_splice 0.41 TCGA-EB-A51B-01 20 61598853 61598853 C T SLC17A9 3'UTR 0.27 TCGA-EB-A51B-01 20 853450 853450 C T ANGPT4 3'UTR 0.44 TCGA-EB-A51B-01 21 10971324 10971324 C T TPTE Silent p.A11A 0.21 TCGA-EB-A51B-01 21 11098869 11098869 C T BAGE2 RNA 0.27 TCGA-EB-A51B-01 21 46896348 46896348 C T COL18A1 Silent p.S474S 0.79 TCGA-EB-A51B-01 22 16287413 16287413 C T POTEH Missense_Mutation p.G158E 0.28 tolerated(0.6) benign(0.033) TCGA-EB-A51B-01 22 21342298 21342298 G A LZTR1 Splice_Site p.X134_splice 0.65 TCGA-EB-A51B-01 22 21342299 21342299 G A LZTR1 Missense_Mutation p.G134E 0.66 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 22 22842827 22842827 C T ZNF280B Silent p.P299P 0.33 TCGA-EB-A51B-01 22 25294085 25294085 C T SGSM1 Silent p.G778G 0.70 TCGA-EB-A51B-01 22 25294086 25294086 C T SGSM1 Missense_Mutation p.L779F 0.71 tolerated(0.42) benign(0.002) TCGA-EB-A51B-01 22 26423397 26423397 C T MYO18B Missense_Mutation p.S2486L 0.72 deleterious_low_confidence(0.04) benign(0.06) TCGA-EB-A51B-01 22 29177147 29177148 GA - CCDC117 Frame_Shift_Del p.E151Dfs*2 0.48 TCGA-EB-A51B-01 22 37578411 37578411 G A C1QTNF6 Silent p.I218I 0.75 TCGA-EB-A51B-01 22 42177662 42177662 G A MEI1 Intron 0.29 TCGA-EB-A51B-01 22 51009389 51009389 G A CPT1B Silent p.I653I 0.21 TCGA-EB-A51B-01 22 51042399 51042399 C T MAPK8IP2 Missense_Mutation p.S224L 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EB-A51B-01 2 108487568 108487568 C T RGPD4 Silent p.I1036I 0.45 TCGA-EB-A51B-01 2 125627284 125627284 C T CNTNAP5 Silent p.F1126F 0.16 TCGA-EB-A51B-01 2 130930247 130930247 G A SMPD4 Missense_Mutation p.P192L 0.44 deleterious(0.01) benign(0.007) TCGA-EB-A51B-01 2 136579755 136579755 G A LCT Intron 0.72 TCGA-EB-A51B-01 2 141356342 141356342 C T LRP1B Missense_Mutation p.G2351E 0.21 probably_damaging(0.982) TCGA-EB-A51B-01 2 141459715 141459715 A T LRP1B Silent p.S2099S 0.17 TCGA-EB-A51B-01 2 153486365 153486365 G A FMNL2 Missense_Mutation p.M832I 0.48 benign(0.043) TCGA-EB-A51B-01 2 158156131 158156131 C T GALNT5 Missense_Mutation p.P690L 0.21 deleterious(0) probably_damaging(0.992) TCGA-EB-A51B-01 2 168725754 168725754 G A B3GALT1 Missense_Mutation p.E69K 0.53 deleterious(0.01) probably_damaging(0.972) TCGA-EB-A51B-01 2 179437668 179437668 G A TTN Silent p.I24397I 0.52 TCGA-EB-A51B-01 2 179595231 179595231 C T TTN Splice_Site p.X6010_splice 0.13 TCGA-EB-A51B-01 2 179611041 179611041 C T TTN Intron 0.40 TCGA-EB-A51B-01 2 179638965 179638965 C T TTN Silent p.G2342G 0.17 TCGA-EB-A51B-01 2 183104921 183104921 A C PDE1A Missense_Mutation p.M105R 0.29 tolerated(0.14) probably_damaging(0.931) TCGA-EB-A51B-01 2 190569801 190569801 T G ANKAR Silent p.V587V 0.29 TCGA-EB-A51B-01 2 190640401 190640401 G A ORMDL1 Silent p.F72F 0.63 TCGA-EB-A51B-01 2 207407976 207407976 G T ADAM23 Splice_Site p.X219_splice 0.20 TCGA-EB-A51B-01 2 217541468 217541468 G A IGFBP5 3'UTR 0.33 TCGA-EB-A51B-01 2 219619213 219619213 C T TTLL4 3'UTR 0.38 TCGA-EB-A51B-01 2 237489319 237489319 C T ACKR3 Nonsense_Mutation p.Q71* 0.29 TCGA-EB-A51B-01 2 240111737 240111737 G A HDAC4 Missense_Mutation p.P44L 0.23 deleterious(0.01) benign(0.434) TCGA-EB-A51B-01 2 241570077 241570077 G A GPR35 Silent p.G267G 0.43 TCGA-EB-A51B-01 2 242815277 242815277 G A CXXC11 Missense_Mutation p.E524K 0.23 deleterious(0.01) benign(0.216) TCGA-EB-A51B-01 2 27151123 27151123 G A DPYSL5 Missense_Mutation p.G201S 0.22 tolerated(0.41) benign(0.262) TCGA-EB-A51B-01 2 28635328 28635328 C T FOSL2 3'UTR 0.25 TCGA-EB-A51B-01 2 33173961 33173961 C T LTBP1 Missense_Mutation p.R172W 0.24 deleterious(0) benign(0.394) TCGA-EB-A51B-01 2 54872391 54872391 G A SPTBN1 Missense_Mutation p.R1432Q 0.45 tolerated(0.06) possibly_damaging(0.532) TCGA-EB-A51B-01 2 54872392 54872392 G A SPTBN1 Silent p.R1432R 0.43 TCGA-EB-A51B-01 2 69569375 69569375 A T GFPT1 Nonsense_Mutation p.L371* 0.56 TCGA-EB-A51B-01 2 71741042 71741042 G A DYSF Silent p.Q250Q 0.54 TCGA-EB-A51B-01 2 87140996 87140996 G A RGPD1 5'Flank 0.35 TCGA-EB-A51B-01 2 87140997 87140997 G A RGPD1 5'Flank 0.35 TCGA-EB-A51B-01 2 8871010 8871010 G A KIDINS220 Missense_Mutation p.P1719L 0.25 deleterious_low_confidence(0.05) benign(0.017) TCGA-EB-A51B-01 2 8871011 8871011 G A KIDINS220 Missense_Mutation p.P1719S 0.20 tolerated_low_confidence(0.94) benign(0) TCGA-EB-A51B-01 2 89036173 89036173 C T RPIA Nonsense_Mutation p.R240* 0.50 TCGA-EB-A51B-01 2 9017164 9017164 G A MBOAT2 Missense_Mutation p.P229L 0.08 deleterious(0) probably_damaging(0.994) TCGA-EB-A51B-01 2 9017165 9017165 G A MBOAT2 Missense_Mutation p.P229S 0.10 deleterious(0.01) probably_damaging(0.913) TCGA-EB-A51B-01 2 96078285 96078285 C T FAHD2A Silent p.V263V 0.25 TCGA-EB-A51B-01 2 98844762 98844762 G A VWA3B Nonsense_Mutation p.W706* 0.60 TCGA-EB-A51B-01 2 98986517 98986517 C T CNGA3 Missense_Mutation p.R27C 0.21 tolerated_low_confidence(0.08) benign(0.002) TCGA-EB-A51B-01 3 113003677 113003677 T C BOC Missense_Mutation p.Y979H 0.77 tolerated(0.57) benign(0.001) TCGA-EB-A51B-01 3 11301946 11301946 A G HRH1 Missense_Mutation p.N408S 0.50 tolerated(0.2) benign(0.084) TCGA-EB-A51B-01 3 11402204 11402204 C T ATG7 Silent p.I543I 0.18 TCGA-EB-A51B-01 3 1394023 1394023 G A CNTN6 Silent p.E460E 0.33 TCGA-EB-A51B-01 3 148596518 148596518 C T CPA3 Missense_Mutation p.P153S 0.66 tolerated(0.26) benign(0.129) TCGA-EB-A51B-01 3 157034961 157034961 A G VEPH1 Missense_Mutation p.F589L 0.67 tolerated(0.31) benign(0.018) TCGA-EB-A51B-01 3 184079358 184079358 C T CLCN2 5'UTR 0.75 TCGA-EB-A51B-01 3 184567736 184567736 G A VPS8 Missense_Mutation p.D227N 0.60 deleterious(0.01) probably_damaging(1) TCGA-EB-A51B-01 3 186274440 186274440 C T TBCCD1 Missense_Mutation p.R206Q 0.78 tolerated(0.3) benign(0.001) TCGA-EB-A51B-01 3 197665517 197665517 G A IQCG Silent p.F139F 0.37 TCGA-EB-A51B-01 3 24188252 24188252 C T THRB Missense_Mutation p.G149E 0.37 tolerated(0.19) benign(0.074) TCGA-EB-A51B-01 3 3078899 3078899 C T CNTN4 Missense_Mutation p.T660I 0.44 deleterious(0) probably_damaging(0.968) TCGA-EB-A51B-01 3 432839 432839 G A CHL1 Missense_Mutation p.G930R 0.33 deleterious(0) probably_damaging(0.998) TCGA-EB-A51B-01 3 44636412 44636412 G A ZNF660 Missense_Mutation p.E243K 0.35 deleterious(0.02) benign(0.161) TCGA-EB-A51B-01 3 46414851 46414851 G A CCR5 Nonsense_Mutation p.W153* 0.45 TCGA-EB-A51B-01 3 46414852 46414852 G A CCR5 Nonsense_Mutation p.W153* 0.44 TCGA-EB-A51B-01 3 47468694 47468694 C T SCAP Silent p.R230R 0.39 TCGA-EB-A51B-01 3 47468695 47468695 C T SCAP Missense_Mutation p.R230K 0.40 deleterious(0.02) benign(0.049) TCGA-EB-A51B-01 3 48929423 48929423 A G SLC25A20 Missense_Mutation p.L63P 0.40 deleterious(0) possibly_damaging(0.811) TCGA-EB-A51B-01 3 49688171 49688171 G A BSN Missense_Mutation p.G549R 0.47 unknown(0) TCGA-EB-A51B-01 3 49688172 49688172 G A BSN Missense_Mutation p.G549E 0.46 unknown(0) TCGA-EB-A51B-01 3 50617942 50617942 C T HEMK1 3'UTR 0.54 TCGA-EB-A51B-01 3 52417878 52417878 C T DNAH1 Missense_Mutation p.P2718L 0.25 probably_damaging(1) TCGA-EB-A51B-01 3 52417879 52417879 C T DNAH1 Silent p.P2718P 0.24 TCGA-EB-A51B-01 3 52860021 52860021 G A ITIH4 Missense_Mutation p.R214W 0.46 tolerated(0.18) possibly_damaging(0.556) TCGA-EB-A51B-01 3 81635304 81635304 G A GBE1 Missense_Mutation p.S425F 0.35 deleterious(0.01) benign(0.14) TCGA-EB-A51B-01 3 87027950 87027950 C A VGLL3 Missense_Mutation p.K43N 0.40 deleterious(0.03) probably_damaging(0.959) TCGA-EB-A51B-01 3 89390910 89390910 C T EPHA3 Missense_Mutation p.P326S 0.28 deleterious(0) probably_damaging(0.998) TCGA-EB-A51B-01 4 115891723 115891723 C T NDST4 Missense_Mutation p.E362K 0.39 tolerated(0.61) benign(0.062) TCGA-EB-A51B-01 4 1343438 1343438 C T UVSSA Silent p.F75F 0.47 TCGA-EB-A51B-01 4 135121568 135121568 C T PABPC4L Missense_Mutation p.D261N 0.67 deleterious(0.05) benign(0.059) TCGA-EB-A51B-01 4 13606323 13606323 G A BOD1L1 Missense_Mutation p.P734L 0.27 benign(0) TCGA-EB-A51B-01 4 153897458 153897458 C T FHDC1 Silent p.A1005A 0.32 TCGA-EB-A51B-01 4 155533881 155533881 C T FGG 5'Flank 0.43 TCGA-EB-A51B-01 4 156135104 156135104 G A NPY2R Missense_Mutation p.G5S 0.40 tolerated_low_confidence(0.16) benign(0.05) TCGA-EB-A51B-01 4 166232654 166232654 G A KLHL2 Missense_Mutation p.E430K 0.34 tolerated(0.31) benign(0.102) TCGA-EB-A51B-01 4 173730554 173730554 C T GALNTL6 Missense_Mutation p.S199F 0.23 deleterious(0.01) benign(0.252) TCGA-EB-A51B-01 4 187455260 187455260 G A MTNR1A Silent p.I212I 0.23 TCGA-EB-A51B-01 4 23814432 23814432 C T PPARGC1A Missense_Mutation p.E653K 0.43 deleterious(0.01) unknown(0) TCGA-EB-A51B-01 4 24838991 24838991 G A CCDC149 Missense_Mutation p.S174F 0.33 tolerated(0.06) possibly_damaging(0.694) TCGA-EB-A51B-01 4 3215792 3215792 G A HTT Silent p.V2294V 0.37 TCGA-EB-A51B-01 4 3215793 3215793 G A HTT Missense_Mutation p.V2295I 0.36 benign(0.001) TCGA-EB-A51B-01 4 3319474 3319474 C T RGS12 Missense_Mutation p.T526I 0.42 tolerated(0.18) benign(0.023) TCGA-EB-A51B-01 4 41668624 41668624 C T LIMCH1 Missense_Mutation p.P728L 0.37 tolerated(0.05) probably_damaging(0.987) TCGA-EB-A51B-01 4 48081940 48081940 G A TXK Missense_Mutation p.H388Y 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 4 48170626 48170626 G A TEC Missense_Mutation p.P158S 0.37 tolerated(0.06) benign(0.017) TCGA-EB-A51B-01 4 70513273 70513273 A C UGT2A1 Silent p.G30G 0.18 TCGA-EB-A51B-01 4 78532280 78532280 G A CXCL13 3'UTR 0.35 TCGA-EB-A51B-01 4 81967228 81967228 G A BMP3 Missense_Mutation p.G218E 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A51B-01 4 85758126 85758126 G A WDFY3 Missense_Mutation p.P178S 0.49 tolerated(0.46) benign(0.003) TCGA-EB-A51B-01 4 89627964 89627964 C T HERC3 Silent p.I1002I 0.51 TCGA-EB-A51B-01 5 121799264 121799264 C T SNCAIP 3'UTR 0.31 TCGA-EB-A51B-01 5 125939612 125939612 C T PHAX Silent p.S149S 0.55 TCGA-EB-A51B-01 5 127681121 127681121 C T FBN2 Missense_Mutation p.E1049K 0.55 tolerated(0.84) benign(0.01) TCGA-EB-A51B-01 5 127872120 127872120 G A FBN2 Silent p.L104L 0.56 TCGA-EB-A51B-01 5 128368961 128368961 G A SLC27A6 Missense_Mutation p.E616K 0.16 tolerated(0.78) benign(0.011) TCGA-EB-A51B-01 5 131007197 131007197 C T FNIP1 Splice_Site p.X980_splice 0.22 TCGA-EB-A51B-01 5 131007198 131007198 C T FNIP1 Missense_Mutation p.G980E 0.21 tolerated(0.23) probably_damaging(1) TCGA-EB-A51B-01 5 132652217 132652217 C T FSTL4 Silent p.V179V 0.50 TCGA-EB-A51B-01 5 140181387 140181387 G A PCDHA3 Missense_Mutation p.R202Q 0.65 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EB-A51B-01 5 140257021 140257021 G A PCDHA12 Missense_Mutation p.G655D 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A51B-01 5 150722532 150722532 G A SLC36A2 Silent p.P119P 0.49 TCGA-EB-A51B-01 5 153181915 153181915 G A GRIA1 Splice_Site p.X806_splice 0.17 TCGA-EB-A51B-01 5 15935300 15935300 C T FBXL7 Intron 0.39 TCGA-EB-A51B-01 5 172518026 172518026 C T CREBRF Missense_Mutation p.L282F 0.50 tolerated_low_confidence(0.7) benign(0.093) TCGA-EB-A51B-01 5 176306397 176306397 C T UNC5A Silent p.F757F 0.27 TCGA-EB-A51B-01 5 35010104 35010104 C T AGXT2 Splice_Site p.X446_splice 0.20 TCGA-EB-A51B-01 5 39383060 39383060 C T DAB2 Missense_Mutation p.G334E 0.26 deleterious(0.04) possibly_damaging(0.78) TCGA-EB-A51B-01 5 42718672 42718672 G A GHR Missense_Mutation p.E355K 0.33 tolerated(0.06) probably_damaging(0.991) TCGA-EB-A51B-01 5 5146405 5146405 G A ADAMTS16 Missense_Mutation p.R113K 0.22 tolerated(1) benign(0.004) TCGA-EB-A51B-01 5 78322276 78322276 C T DMGDH Missense_Mutation p.E721K 0.27 deleterious(0.03) possibly_damaging(0.856) TCGA-EB-A51B-01 5 79033779 79033779 C T CMYA5 Missense_Mutation p.S3064F 0.17 benign(0.106) TCGA-EB-A51B-01 5 80388680 80388680 C T RASGRF2 Missense_Mutation p.S484L 0.29 tolerated(0.06) benign(0.102) TCGA-EB-A51B-01 5 90124881 90124881 C T GPR98 Missense_Mutation p.L5497F 0.32 possibly_damaging(0.86) TCGA-EB-A51B-01 5 95748039 95748039 C T PCSK1 Missense_Mutation p.E289K 0.30 tolerated(0.12) possibly_damaging(0.794) TCGA-EB-A51B-01 5 96314972 96314972 T C LNPEP Silent p.G50G 0.22 TCGA-EB-A51B-01 6 10749493 10749493 C T TMEM14B Silent p.L5L 0.42 TCGA-EB-A51B-01 6 117113328 117113328 G A GPRC6A Nonsense_Mutation p.R920* 0.37 TCGA-EB-A51B-01 6 122743397 122743397 C T HSF2 Missense_Mutation p.P262S 0.29 tolerated(0.11) benign(0.014) TCGA-EB-A51B-01 6 130505281 130505281 G A SAMD3 Silent p.A207A 0.47 TCGA-EB-A51B-01 6 132196918 132196918 C T ENPP1 Silent p.A546A 0.35 TCGA-EB-A51B-01 6 138618076 138618076 C T KIAA1244 Missense_Mutation p.A1211V 0.38 deleterious(0) probably_damaging(0.916) TCGA-EB-A51B-01 6 152746600 152746600 G A SYNE1 Missense_Mutation p.S1728F 0.45 benign(0.219) TCGA-EB-A51B-01 6 162622218 162622218 C T PARK2 Missense_Mutation p.G160E 0.20 deleterious(0.01) probably_damaging(1) TCGA-EB-A51B-01 6 24596303 24596303 C T KIAA0319 Missense_Mutation p.G200E 0.34 tolerated(0.25) benign(0.022) TCGA-EB-A51B-01 6 25845673 25845673 G A SLC17A3 Silent p.Y478Y 0.36 TCGA-EB-A51B-01 6 26370823 26370823 C T BTN3A2 Missense_Mutation p.S236F 0.36 tolerated(0.24) probably_damaging(0.999) TCGA-EB-A51B-01 6 28060422 28060422 G A ZNF165 3'Flank 0.19 TCGA-EB-A51B-01 6 29080470 29080470 G A OR2J3 Missense_Mutation p.G268E 0.32 tolerated(0.23) benign(0.011) TCGA-EB-A51B-01 6 31431535 31431535 C T HCP5 RNA 0.38 TCGA-EB-A51B-01 6 32137278 32137278 G A AGPAT1 Intron 0.42 TCGA-EB-A51B-01 6 34309730 34309730 C T NUDT3 Missense_Mutation p.S40N 0.44 deleterious(0.04) possibly_damaging(0.876) TCGA-EB-A51B-01 6 36446908 36446908 C T KCTD20 Missense_Mutation p.P149S 0.30 tolerated(1) benign(0.17) TCGA-EB-A51B-01 6 36446909 36446909 C T KCTD20 Missense_Mutation p.P149L 0.30 tolerated(0.14) possibly_damaging(0.752) TCGA-EB-A51B-01 6 36995837 36995837 G A FGD2 Silent p.K622K 0.23 TCGA-EB-A51B-01 6 37622656 37622656 C T MDGA1 Missense_Mutation p.S211N 0.38 tolerated(1) benign(0.426) TCGA-EB-A51B-01 6 41754766 41754766 G A PRICKLE4 Missense_Mutation p.G352R 0.48 deleterious(0) probably_damaging(0.988) TCGA-EB-A51B-01 6 43106612 43106612 C T PTK7 Silent p.P426P 0.36 TCGA-EB-A51B-01 6 43193770 43193770 C T DNPH1 Splice_Site p.X126_splice 0.44 TCGA-EB-A51B-01 6 43193771 43193771 C T DNPH1 Missense_Mutation p.V126M 0.43 tolerated(0.14) possibly_damaging(0.552) TCGA-EB-A51B-01 6 46644183 46644183 C T SLC25A27 Missense_Mutation p.P322S 0.42 tolerated(1) benign(0.001) TCGA-EB-A51B-01 6 46867793 46867793 C T GPR116 Missense_Mutation p.E44K 0.26 tolerated(0.36) benign(0.004) TCGA-EB-A51B-01 6 74150146 74150146 C T MB21D1 Silent p.R300R 0.41 TCGA-EB-A51B-01 6 75801223 75801223 C T COL12A1 Missense_Mutation p.G2890R 0.36 probably_damaging(1) TCGA-EB-A51B-01 6 76589650 76589650 C T MYO6 Missense_Mutation p.P731S 0.36 tolerated(0.06) unknown(0) TCGA-EB-A51B-01 6 83847699 83847699 C T DOPEY1 Missense_Mutation p.S1313F 0.49 deleterious(0.05) benign(0.019) TCGA-EB-A51B-01 7 100687042 100687042 G A MUC17 Silent p.T4115T 0.47 TCGA-EB-A51B-01 7 103474028 103474028 G A RELN Silent p.F143F 0.42 TCGA-EB-A51B-01 7 105207536 105207536 T G EFCAB10 Intron 0.39 TCGA-EB-A51B-01 7 113518848 113518848 C T PPP1R3A Missense_Mutation p.E767K 0.15 deleterious(0.04) possibly_damaging(0.465) TCGA-EB-A51B-01 7 113519756 113519756 C T PPP1R3A Missense_Mutation p.G464E 0.30 tolerated(0.21) benign(0.008) TCGA-EB-A51B-01 7 115581802 115581802 G A TFEC Intron 0.43 TCGA-EB-A51B-01 7 121691929 121691929 C T PTPRZ1 Missense_Mutation p.S2063L 0.22 deleterious(0) possibly_damaging(0.68) TCGA-EB-A51B-01 7 126173369 126173369 G A GRM8 Silent p.F689F 0.37 TCGA-EB-A51B-01 7 128138111 128138111 G C METTL2B Missense_Mutation p.R277S 0.39 deleterious(0.02) benign(0.141) TCGA-EB-A51B-01 7 129847843 129847843 G A SSMEM1 Silent p.K31K 0.41 TCGA-EB-A51B-01 7 138453967 138453967 C T ATP6V0A4 Silent p.R49R 0.37 TCGA-EB-A51B-01 7 141730199 141730199 G A MGAM Missense_Mutation p.R420K 0.33 tolerated(1) benign(0.013) TCGA-EB-A51B-01 7 142021269 142021269 C T TRBV5-1 Silent p.F83F 0.37 TCGA-EB-A51B-01 7 146471365 146471365 A T CNTNAP2 Nonsense_Mutation p.K34* 0.39 TCGA-EB-A51B-01 7 22184806 22184806 C T RAPGEF5 Missense_Mutation p.G528E 0.28 tolerated(0.27) possibly_damaging(0.886) TCGA-EB-A51B-01 7 32110031 32110031 G A PDE1C Intron 0.37 TCGA-EB-A51B-01 7 37901645 37901645 G A NME8 Missense_Mutation p.E96K 0.43 deleterious(0.01) benign(0.108) TCGA-EB-A51B-01 7 37934075 37934075 C T NME8 Silent p.I469I 0.36 TCGA-EB-A51B-01 7 42977019 42977019 C T MRPL32 Silent p.I137I 0.35 TCGA-EB-A51B-01 7 5920487 5920487 C T OCM 5'UTR 0.44 TCGA-EB-A51B-01 7 86479721 86479721 G A GRM3 Silent p.L809L 0.46 TCGA-EB-A51B-01 7 891082 891082 G A SUN1 Silent p.T240T 0.33 TCGA-EB-A51B-01 7 891083 891083 G A SUN1 Missense_Mutation p.A241T 0.29 tolerated(0.06) benign(0.009) TCGA-EB-A51B-01 7 97488605 97488605 G A ASNS Missense_Mutation p.S198F 0.43 tolerated(0.72) benign(0.006) TCGA-EB-A51B-01 7 98560035 98560035 C T TRRAP Missense_Mutation p.P2265S 0.40 benign(0.004) TCGA-EB-A51B-01 7 99146017 99146017 G A FAM200A Missense_Mutation p.S5L 0.17 deleterious_low_confidence(0) benign(0.007) TCGA-EB-A51B-01 7 99957135 99957135 C T PILRB Silent p.L210L 0.40 TCGA-EB-A51B-01 8 105367173 105367173 C T DCSTAMP Silent p.I366I 0.48 TCGA-EB-A51B-01 8 106815787 106815787 C T ZFPM2 3'UTR 0.53 TCGA-EB-A51B-01 8 118811915 118811915 C T EXT1 3'UTR 0.41 TCGA-EB-A51B-01 8 141572682 141572682 C T AGO2 Missense_Mutation p.V130M 0.39 deleterious(0) probably_damaging(0.937) TCGA-EB-A51B-01 8 141572683 141572683 C T AGO2 Silent p.K129K 0.39 TCGA-EB-A51B-01 8 143996558 143996558 C T CYP11B2 Missense_Mutation p.D167N 0.49 deleterious(0) probably_damaging(0.99) TCGA-EB-A51B-01 8 143996559 143996559 C T CYP11B2 Silent p.R166R 0.50 TCGA-EB-A51B-01 8 144877503 144877503 C T SCRIB Missense_Mutation p.E1239K 0.31 benign(0.234) TCGA-EB-A51B-01 8 145111521 145111521 C T OPLAH Missense_Mutation p.R615Q 0.18 tolerated(0.33) benign(0.048) TCGA-EB-A51B-01 8 145235341 145235341 C T MROH1 Silent p.V159V 0.36 TCGA-EB-A51B-01 8 146003505 146003505 C T ZNF34 Silent p.E47E 0.14 TCGA-EB-A51B-01 8 22460730 22460730 G A C8orf58 Missense_Mutation p.E337K 0.28 tolerated(0.06) benign(0.09) TCGA-EB-A51B-01 8 23179790 23179790 G A LOXL2 Silent p.I385I 0.49 TCGA-EB-A51B-01 8 23186041 23186041 C T LOXL2 Missense_Mutation p.G335E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 8 26510895 26510895 T C DPYSL2 Missense_Mutation p.S537P 0.25 deleterious(0) probably_damaging(0.956) TCGA-EB-A51B-01 8 27361207 27361207 C A EPHX2 Silent p.I91I 0.48 TCGA-EB-A51B-01 8 2830821 2830821 C T CSMD1 Missense_Mutation p.G2914E 0.43 probably_damaging(0.999) TCGA-EB-A51B-01 8 29194616 29194616 G A DUSP4 Missense_Mutation p.S371F 0.52 deleterious(0.01) possibly_damaging(0.88) TCGA-EB-A51B-01 8 2967763 2967763 G A CSMD1 Silent p.L2175L 0.48 TCGA-EB-A51B-01 8 38090689 38090689 C T DDHD2 Silent p.F59F 0.51 TCGA-EB-A51B-01 8 42823319 42823320 - AC HOOK3 Frame_Shift_Ins p.A363Tfs*14 0.26 TCGA-EB-A51B-01 8 57354361 57354361 C T PENK Missense_Mutation p.E92K 0.40 tolerated(0.16) benign(0.15) TCGA-EB-A51B-01 8 67039403 67039403 G A TRIM55 5'UTR 0.27 TCGA-EB-A51B-01 8 87242136 87242136 A T SLC7A13 Missense_Mutation p.F124Y 0.25 tolerated(1) benign(0.005) TCGA-EB-A51B-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.40 deleterious(0.02) possibly_damaging(0.887) TCGA-EB-A51B-01 8 95686668 95686668 A G ESRP1 Missense_Mutation p.N529D 0.29 deleterious(0.02) possibly_damaging(0.52) TCGA-EB-A51B-01 9 105767654 105767654 A G CYLC2 Silent p.G247G 0.44 TCGA-EB-A51B-01 9 112141813 112141813 G A PTPN3 3'UTR 0.38 TCGA-EB-A51B-01 9 118950332 118950332 G A PAPPA Missense_Mutation p.D439N 0.32 deleterious(0.01) possibly_damaging(0.822) TCGA-EB-A51B-01 9 127572580 127572580 C T OLFML2A Silent p.F616F 0.46 TCGA-EB-A51B-01 9 138714209 138714209 C T CAMSAP1 Silent p.G766G 0.40 TCGA-EB-A51B-01 9 138714210 138714210 C T CAMSAP1 Missense_Mutation p.G766E 0.40 tolerated(0.23) possibly_damaging(0.686) TCGA-EB-A51B-01 9 140082901 140082901 G C ANAPC2 Missense_Mutation p.S28R 0.32 deleterious(0.01) benign(0.276) TCGA-EB-A51B-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.89 TCGA-EB-A51B-01 9 73028056 73028056 G A KLF9 Missense_Mutation p.P75L 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-EB-A51B-01 9 78936366 78936366 G A PCSK5 Missense_Mutation p.E1278K 0.42 tolerated(1) benign(0.004) TCGA-EB-A51B-01 9 79320043 79320043 C T PRUNE2 Missense_Mutation p.D2383N 0.41 tolerated(0.48) benign(0.009) TCGA-EB-A51B-01 9 84530398 84530398 G T SPATA31D5P RNA 0.37 TCGA-EB-A51B-01 9 88270057 88270057 C T AGTPBP1 Splice_Site p.X323_splice 0.29 TCGA-EB-A51B-01 9 88270058 88270058 C T AGTPBP1 Missense_Mutation p.V323M 0.29 deleterious(0.04) probably_damaging(0.979) TCGA-EB-A51B-01 9 88650472 88650472 G A GOLM1 Missense_Mutation p.R276W 0.41 deleterious(0.02) benign(0.14) TCGA-EB-A51B-01 9 88650474 88650474 C G GOLM1 Missense_Mutation p.G275A 0.40 tolerated(0.1) probably_damaging(0.959) TCGA-EB-A51B-01 X 102885076 102885076 C T TCEAL1 Silent p.L78L 0.74 TCGA-EB-A51B-01 X 104440408 104440408 G A IL1RAPL2 Missense_Mutation p.G112R 0.89 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 X 129629709 129629709 G A RP1-274L7.1 Intron 0.89 TCGA-EB-A51B-01 X 135431372 135431372 T C GPR112 Missense_Mutation p.F1836S 0.86 tolerated(0.08) benign(0.009) TCGA-EB-A51B-01 X 150348263 150348263 C T GPR50 Missense_Mutation p.L70F 0.88 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 X 155003869 155003869 C T SPRY3 Silent p.I112I 0.75 TCGA-EB-A51B-01 X 37027473 37027473 C T FAM47C Silent p.L330L 0.85 TCGA-EB-A51B-01 X 37027474 37027474 C T FAM47C Missense_Mutation p.H331Y 0.85 tolerated(1) benign(0.036) TCGA-EB-A51B-01 X 37029653 37029653 A G FAM47C 3'UTR 0.89 TCGA-EB-A51B-01 X 53268462 53268462 G A IQSEC2 Silent p.F1010F 0.89 TCGA-EB-A51B-01 X 65417626 65417626 C T HEPH Missense_Mutation p.L589F 0.75 deleterious(0) probably_damaging(1) TCGA-EB-A51B-01 X 68058520 68058520 C A EFNB1 Silent p.I63I 0.75 TCGA-EB-A51B-01 X 70511790 70511790 C T NONO Missense_Mutation p.H106Y 0.85 deleterious(0) benign(0.149) TCGA-EB-A51B-01 X 77528683 77528683 C T CYSLTR1 Silent p.L187L 0.80 TCGA-EB-A51B-01 X 77912512 77912512 C T ZCCHC5 Missense_Mutation p.G469E 1.00 deleterious(0.02) possibly_damaging(0.79) TCGA-EB-A51B-01 X 99657519 99657519 C T PCDH19 Intron 0.43 TCGA-EB-A550-01 10 104592755 104592755 G A CYP17A1 Missense_Mutation p.P322S 0.24 deleterious(0) probably_damaging(0.975) TCGA-EB-A550-01 10 124600826 124600826 A C CUZD1 Missense_Mutation p.V34G 0.31 tolerated(0.11) benign(0.007) TCGA-EB-A550-01 10 124600827 124600827 C A CUZD1 Missense_Mutation p.V34F 0.31 deleterious(0) benign(0.047) TCGA-EB-A550-01 10 3824023 3824023 C T KLF6 Nonsense_Mutation p.W162* 0.24 TCGA-EB-A550-01 10 3824024 3824024 C T KLF6 Nonsense_Mutation p.W162* 0.24 TCGA-EB-A550-01 10 52067885 52067885 A G SGMS1 Missense_Mutation p.Y307H 0.33 deleterious(0) probably_damaging(0.997) TCGA-EB-A550-01 10 82191833 82191833 C T FAM213A Missense_Mutation p.T223I 0.36 tolerated(0.09) benign(0.004) TCGA-EB-A550-01 11 123894642 123894642 C T OR10G9 Missense_Mutation p.S308F 0.21 tolerated(0.11) benign(0.001) TCGA-EB-A550-01 11 5080467 5080467 G A OR52E2 Missense_Mutation p.P131S 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 11 56431593 56431593 C T OR5AR1 Silent p.L144L 0.24 TCGA-EB-A550-01 11 66191400 66191400 C T NPAS4 Missense_Mutation p.P347S 0.18 tolerated(0.65) benign(0) TCGA-EB-A550-01 11 67200124 67200124 G A RPS6KB2 Missense_Mutation p.A171T 0.19 deleterious(0.04) probably_damaging(0.913) TCGA-EB-A550-01 11 71821348 71821348 C T LRTOMT 3'UTR 0.23 TCGA-EB-A550-01 11 7670766 7670766 G A PPFIBP2 Missense_Mutation p.D668N 0.20 deleterious(0.01) probably_damaging(1) TCGA-EB-A550-01 12 119588891 119588891 G A SRRM4 Silent p.R382R 0.17 TCGA-EB-A550-01 12 120763732 120763732 C A PLA2G1B Missense_Mutation p.L42F 0.17 tolerated(0.14) benign(0.013) TCGA-EB-A550-01 12 12966284 12966284 C T DDX47 5'UTR 0.32 TCGA-EB-A550-01 12 18658304 18658304 G A PIK3C2G Missense_Mutation p.D1037N 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 12 52306956 52306956 C T ACVRL1 Silent p.T45T 0.42 TCGA-EB-A550-01 12 53086243 53086243 G A KRT77 Silent p.I463I 0.19 TCGA-EB-A550-01 12 53233007 53233007 C T KRT78 Missense_Mutation p.D485N 0.28 tolerated(0.18) benign(0.053) TCGA-EB-A550-01 12 55641256 55641256 G A OR6C74 Missense_Mutation p.R62Q 0.25 tolerated_low_confidence(0.17) benign(0.03) TCGA-EB-A550-01 12 56087097 56087097 G A ITGA7 Missense_Mutation p.S851F 0.18 tolerated(0.7) probably_damaging(0.986) TCGA-EB-A550-01 12 57351223 57351223 G A RDH16 Silent p.F8F 0.23 TCGA-EB-A550-01 12 57911098 57911098 G A DDIT3 Missense_Mutation p.S54L 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-EB-A550-01 12 58135734 58135734 G A AGAP2 5'Flank 0.18 TCGA-EB-A550-01 12 6936054 6936054 G A GPR162 Silent p.E484E 0.18 TCGA-EB-A550-01 12 70003916 70003916 G A LRRC10 Missense_Mutation p.R235C 0.24 tolerated(0.06) benign(0.016) TCGA-EB-A550-01 12 9006811 9006811 G A A2ML1 Missense_Mutation p.R893Q 0.22 tolerated(0.4) benign(0.005) TCGA-EB-A550-01 12 91498098 91498098 T C LUM Splice_Site p.X288_splice 0.20 TCGA-EB-A550-01 12 91558474 91558474 C T DCN Missense_Mutation p.D78N 0.35 tolerated(0.68) benign(0.002) TCGA-EB-A550-01 12 96388575 96388575 C T HAL Splice_Site p.X112_splice 0.20 TCGA-EB-A550-01 13 103718381 103718381 G A SLC10A2 Silent p.L73L 0.27 TCGA-EB-A550-01 13 109475533 109475533 A - MYO16 Frame_Shift_Del p.M315* 0.23 TCGA-EB-A550-01 14 101200728 101200728 C T DLK1 Missense_Mutation p.P216L 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 14 104641721 104641721 G A KIF26A Missense_Mutation p.G866R 0.24 tolerated(0.72) benign(0.011) TCGA-EB-A550-01 14 104641722 104641722 G A KIF26A Missense_Mutation p.G866E 0.24 tolerated(1) possibly_damaging(0.454) TCGA-EB-A550-01 14 20249337 20249337 C T OR4M1 Missense_Mutation p.P286S 0.12 deleterious(0.01) possibly_damaging(0.725) TCGA-EB-A550-01 14 20444047 20444047 C T OR4K15 Nonsense_Mutation p.Q124* 0.13 TCGA-EB-A550-01 14 23344754 23344754 C T LRP10 Silent p.F199F 0.17 TCGA-EB-A550-01 15 101436085 101436085 C T ALDH1A3 Intron 0.33 TCGA-EB-A550-01 15 78403578 78403578 G A CIB2 Missense_Mutation p.P43S 0.22 tolerated(0.09) probably_damaging(0.969) TCGA-EB-A550-01 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.24 TCGA-EB-A550-01 16 24579195 24579195 C T RBBP6 Missense_Mutation p.R679C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EB-A550-01 16 2580240 2580240 C T CEMP1 3'UTR 0.28 TCGA-EB-A550-01 16 29922437 29922437 G - KCTD13 Frame_Shift_Del p.F206Sfs*59 0.13 TCGA-EB-A550-01 16 56536350 56536350 C T BBS2 Missense_Mutation p.G320D 0.15 tolerated(0.18) benign(0.02) TCGA-EB-A550-01 16 56977274 56977274 C T HERPUD1 3'UTR 0.25 TCGA-EB-A550-01 16 71674477 71674477 G A MARVELD3 Silent p.T260T 0.29 TCGA-EB-A550-01 16 74927706 74927706 G A WDR59 Missense_Mutation p.S624L 0.23 tolerated(0.11) benign(0.387) TCGA-EB-A550-01 16 76482014 76482014 T A CNTNAP4 Missense_Mutation p.M190K 0.22 tolerated(0.13) benign(0.024) TCGA-EB-A550-01 16 84492783 84492783 C T ATP2C2 Silent p.F735F 0.21 TCGA-EB-A550-01 17 21319683 21319683 G A KCNJ12 Silent p.S343S 0.07 TCGA-EB-A550-01 17 26732083 26732083 G A SLC46A1 Missense_Mutation p.P211L 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 17 62856762 62856762 G A LRRC37A3 Missense_Mutation p.L1168F 0.22 deleterious(0.04) benign(0.029) TCGA-EB-A550-01 17 6511782 6511782 G A KIAA0753 Missense_Mutation p.A572V 0.26 tolerated(0.12) probably_damaging(0.994) TCGA-EB-A550-01 17 8133615 8133615 G A CTC1 Missense_Mutation p.S977F 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 18 44030342 44030342 C T RNF165 Silent p.S233S 0.12 TCGA-EB-A550-01 18 61390440 61390440 C T SERPINB11 Missense_Mutation p.S329L 0.21 deleterious(0) probably_damaging(0.982) TCGA-EB-A550-01 18 76755107 76755107 C T SALL3 Missense_Mutation p.P1039L 0.19 tolerated(0.3) possibly_damaging(0.507) TCGA-EB-A550-01 19 15276724 15276724 G A NOTCH3 Silent p.A1847A 0.26 TCGA-EB-A550-01 19 16899927 16899927 C T NWD1 Missense_Mutation p.P956S 0.15 tolerated(0.4) benign(0.02) TCGA-EB-A550-01 19 17104397 17104397 C T CPAMD8 Splice_Site p.X413_splice 0.12 TCGA-EB-A550-01 19 19369410 19369410 C T HAPLN4 Missense_Mutation p.G247R 0.16 tolerated(0.06) possibly_damaging(0.734) TCGA-EB-A550-01 19 38189269 38189269 G A ZNF607 Missense_Mutation p.S588F 0.19 deleterious(0) benign(0.396) TCGA-EB-A550-01 19 4054818 4054818 G A ZBTB7A Missense_Mutation p.A138V 0.29 tolerated(0.3) benign(0.263) TCGA-EB-A550-01 19 50248613 50248613 C T TSKS Missense_Mutation p.E345K 0.16 tolerated(0.26) probably_damaging(0.996) TCGA-EB-A550-01 19 50367329 50367329 C A PNKP Splice_Site p.X213_splice 0.27 TCGA-EB-A550-01 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.35 tolerated(0.21) benign(0.065) TCGA-EB-A550-01 19 51532576 51532576 C T KLK12 Intron 0.20 TCGA-EB-A550-01 19 52793648 52793648 C T ZNF766 Missense_Mutation p.L202F 0.19 tolerated(0.09) possibly_damaging(0.886) TCGA-EB-A550-01 19 53219157 53219157 G A ZNF611 5'UTR 0.38 TCGA-EB-A550-01 19 53472713 53472713 G A ZNF702P RNA 0.18 TCGA-EB-A550-01 19 55106710 55106710 G T LILRA1 Silent p.L168L 0.17 TCGA-EB-A550-01 19 5590294 5590294 G A SAFB2 Silent p.P840P 0.25 TCGA-EB-A550-01 19 9058884 9058884 G A MUC16 Missense_Mutation p.S9521F 0.27 unknown(0) TCGA-EB-A550-01 1 110293386 110293386 C T EPS8L3 Missense_Mutation p.G557R 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 1 110293387 110293387 C T EPS8L3 Silent p.T556T 0.26 TCGA-EB-A550-01 1 111998750 111998750 C T ATP5F1 Missense_Mutation p.S89F 0.19 deleterious(0) probably_damaging(0.992) TCGA-EB-A550-01 1 153954931 153954931 G A RAB13 Intron 0.22 TCGA-EB-A550-01 1 1688130 1688130 G A NADK Intron 0.25 TCGA-EB-A550-01 1 173596219 173596219 G A ANKRD45 Silent p.L192L 0.14 TCGA-EB-A550-01 1 177133537 177133537 G A ASTN1 Silent p.F92F 0.24 TCGA-EB-A550-01 1 17949615 17949615 C T ARHGEF10L Missense_Mutation p.S382F 0.22 deleterious(0) probably_damaging(0.99) TCGA-EB-A550-01 1 205901003 205901003 G A SLC26A9 Silent p.L179L 0.32 TCGA-EB-A550-01 1 241262043 241262043 C A RGS7 Missense_Mutation p.R33L 0.15 tolerated(0.21) probably_damaging(0.986) TCGA-EB-A550-01 1 247751758 247751758 C T OR2G2 Missense_Mutation p.L33F 0.24 tolerated(0.18) benign(0.005) TCGA-EB-A550-01 1 34070982 34070982 G A CSMD2 Silent p.T2146T 0.21 TCGA-EB-A550-01 1 43898777 43898777 C T SZT2 Missense_Mutation p.S1850L 0.20 deleterious_low_confidence(0.04) benign(0.003) TCGA-EB-A550-01 1 47515883 47515883 C T CYP4X1 3'UTR 0.22 TCGA-EB-A550-01 1 57340760 57340760 G A C8A Missense_Mutation p.E104K 0.35 deleterious(0) possibly_damaging(0.752) TCGA-EB-A550-01 20 1559106 1559106 G A RP4-576H24.4 Missense_Mutation p.S103F 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 20 18724872 18724872 C G DTD1 Missense_Mutation p.D202E 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EB-A550-01 20 25057064 25057064 C T VSX1 Missense_Mutation p.G311S 0.23 tolerated(0.49) benign(0.004) TCGA-EB-A550-01 20 33460478 33460478 C T GGT7 Silent p.E47E 0.31 TCGA-EB-A550-01 20 36870158 36870158 G A KIAA1755 Silent p.S125S 0.17 TCGA-EB-A550-01 20 4163061 4163061 C T SMOX Missense_Mutation p.S312L 0.26 deleterious(0) benign(0.034) TCGA-EB-A550-01 20 43743647 43743647 C T WFDC5 Silent p.K26K 0.27 TCGA-EB-A550-01 20 44506581 44506581 G A ZSWIM3 Missense_Mutation p.E462K 0.21 tolerated(0.59) benign(0.019) TCGA-EB-A550-01 20 44750474 44750474 C G CD40 Missense_Mutation p.P23A 0.19 tolerated(0.97) benign(0.001) TCGA-EB-A550-01 20 46264964 46264964 C - NCOA3 Frame_Shift_Del p.P612Lfs*26 0.18 TCGA-EB-A550-01 20 62594108 62594108 G A ZNF512B Silent p.S665S 0.18 TCGA-EB-A550-01 21 15561542 15561542 C T LIPI Missense_Mutation p.G103E 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 21 15599275 15599275 C T RBM11 Silent p.S169S 0.21 TCGA-EB-A550-01 21 30934048 30934048 C T GRIK1 Silent p.L751L 0.20 TCGA-EB-A550-01 22 19747110 19747110 G A TBX1 5'UTR 0.17 TCGA-EB-A550-01 22 19920006 19920006 G A TXNRD2 Intron 0.21 TCGA-EB-A550-01 22 21989380 21989380 C T CCDC116 Missense_Mutation p.T343I 0.14 tolerated(0.15) benign(0.019) TCGA-EB-A550-01 22 37334340 37334340 C T CSF2RB Silent p.P830P 0.18 TCGA-EB-A550-01 22 38245372 38245372 G A EIF3L 5'UTR 0.24 TCGA-EB-A550-01 22 51010634 51010634 C T CPT1B Missense_Mutation p.E486K 0.20 deleterious(0.01) possibly_damaging(0.855) TCGA-EB-A550-01 2 128622694 128622694 G A AMMECR1L Missense_Mutation p.P303S 0.05 tolerated_low_confidence(0.5) benign(0.41) TCGA-EB-A550-01 2 14774189 14774189 T A FAM84A Missense_Mutation p.L29Q 0.29 tolerated(0.13) probably_damaging(0.995) TCGA-EB-A550-01 2 169764717 169764717 C T G6PC2 3'Flank 0.21 TCGA-EB-A550-01 2 178545628 178545628 C T PDE11A Silent p.R783R 0.18 TCGA-EB-A550-01 2 179192983 179192983 G A OSBPL6 Missense_Mutation p.E66K 0.23 tolerated(0.31) probably_damaging(0.969) TCGA-EB-A550-01 2 179614018 179614018 G A TTN Intron 0.25 TCGA-EB-A550-01 2 207173136 207173136 C T ZDBF2 Missense_Mutation p.S1295F 0.12 deleterious(0.03) possibly_damaging(0.485) TCGA-EB-A550-01 2 212426738 212426738 G A ERBB4 Nonsense_Mutation p.Q793* 0.22 TCGA-EB-A550-01 2 234079225 234079225 G T INPP5D Missense_Mutation p.R613S 0.22 tolerated(0.1) benign(0.047) TCGA-EB-A550-01 2 234591195 234591195 G A UGT1A7 Silent p.K204K 0.20 TCGA-EB-A550-01 2 3743897 3743897 T G ALLC Missense_Mutation p.W234G 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 2 58425741 58425741 G A FANCL Silent p.S176S 0.21 TCGA-EB-A550-01 2 61420083 61420083 G A USP34 Missense_Mutation p.H3181Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-EB-A550-01 2 70124573 70124573 C T SNRNP27 Silent p.S111S 0.30 TCGA-EB-A550-01 2 71891488 71891488 C T DYSF Silent p.I1698I 0.22 TCGA-EB-A550-01 2 73799895 73799895 C T ALMS1 Missense_Mutation p.R3630C 0.21 probably_damaging(0.995) TCGA-EB-A550-01 2 90212207 90212207 C T IGKV3D-11 Missense_Mutation p.P100L 0.24 deleterious(0.02) benign(0.028) TCGA-EB-A550-01 3 10401577 10401577 G A ATP2B2 Silent p.I630I 0.36 TCGA-EB-A550-01 3 121195573 121195573 G A POLQ Silent p.F2073F 0.28 TCGA-EB-A550-01 3 122003857 122003857 G A CASR Missense_Mutation p.G1029E 0.23 tolerated_low_confidence(0.09) benign(0.001) TCGA-EB-A550-01 3 122056434 122056434 G A CSTA Missense_Mutation p.G36E 0.22 tolerated(1) benign(0.002) TCGA-EB-A550-01 3 123633876 123633876 G A CCDC14 Missense_Mutation p.T830I 0.13 tolerated(0.31) probably_damaging(0.934) TCGA-EB-A550-01 3 128200131 128200131 C T GATA2 Missense_Mutation p.G392R 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A550-01 3 130422667 130422667 T C PIK3R4 Missense_Mutation p.R1000G 0.23 tolerated(0.39) benign(0.372) TCGA-EB-A550-01 3 134670623 134670623 G A EPHB1 Silent p.Q178Q 0.18 TCGA-EB-A550-01 3 195516407 195516407 C A MUC4 Missense_Mutation p.V682F 0.17 unknown(0) TCGA-EB-A550-01 3 195518235 195518235 A G MUC4 Silent p.A72A 0.25 TCGA-EB-A550-01 3 40553961 40553961 C T ZNF620 Missense_Mutation p.P74S 0.18 tolerated(0.12) benign(0.117) TCGA-EB-A550-01 4 100463301 100463301 G C C4orf17 3'UTR 0.23 TCGA-EB-A550-01 4 119035960 119035960 G A NDST3 Splice_Site p.X357_splice 0.17 TCGA-EB-A550-01 4 122068228 122068228 G A TNIP3 Silent p.S314S 0.17 TCGA-EB-A550-01 4 126411851 126411851 C T FAT4 Missense_Mutation p.A4625V 0.26 probably_damaging(0.99) TCGA-EB-A550-01 4 81207860 81207860 C T FGF5 3'UTR 0.28 TCGA-EB-A550-01 5 13928218 13928218 C A DNAH5 Nonsense_Mutation p.E88* 0.27 TCGA-EB-A550-01 5 140032718 140032718 C T IK Silent p.P131P 0.14 TCGA-EB-A550-01 5 143853385 143853385 C T KCTD16 Missense_Mutation p.P332L 0.24 deleterious(0) probably_damaging(0.997) TCGA-EB-A550-01 5 154300922 154300922 T G GEMIN5 Silent p.P481P 0.26 TCGA-EB-A550-01 5 176315850 176315850 G A HK3 Silent p.I310I 0.20 TCGA-EB-A550-01 5 21760756 21760756 C T CDH12 Missense_Mutation p.R515Q 0.22 tolerated(0.2) benign(0.005) TCGA-EB-A550-01 5 32087504 32087504 C G PDZD2 Missense_Mutation p.T1317S 0.15 tolerated(0.1) benign(0.004) TCGA-EB-A550-01 5 60060139 60060139 C T ELOVL7 Silent p.K138K 0.25 TCGA-EB-A550-01 5 79026920 79026920 G A CMYA5 Missense_Mutation p.V778M 0.14 benign(0.01) TCGA-EB-A550-01 6 116757367 116757367 C T DSE Missense_Mutation p.P579L 0.21 deleterious(0.03) benign(0.009) TCGA-EB-A550-01 6 128134491 128134491 C T THEMIS Missense_Mutation p.G432E 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 6 134349655 134349655 G A SLC2A12 Silent p.S436S 0.22 TCGA-EB-A550-01 6 161006178 161006178 G A LPA Nonsense_Mutation p.R1397* 0.17 TCGA-EB-A550-01 6 167708133 167708133 C T UNC93A Silent p.I72I 0.24 TCGA-EB-A550-01 6 26124558 26124559 - C HIST1H2AC Frame_Shift_Ins p.L34Pfs*4 0.13 TCGA-EB-A550-01 6 31778966 31778966 C T HSPA1L Missense_Mutation p.V262M 0.25 tolerated_low_confidence(0.06) probably_damaging(0.919) TCGA-EB-A550-01 6 52054098 52054098 G A IL17A 3'UTR 0.21 TCGA-EB-A550-01 6 56044540 56044540 C T COL21A1 Missense_Mutation p.R159K 0.23 tolerated(0.07) probably_damaging(0.946) TCGA-EB-A550-01 6 74104737 74104737 C T DDX43 Nonsense_Mutation p.R37* 0.21 TCGA-EB-A550-01 6 84233612 84233612 C T PRSS35 Missense_Mutation p.S151F 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A550-01 7 102137396 102137396 G A RASA4B Silent p.S251S 0.22 TCGA-EB-A550-01 7 126173578 126173578 C T GRM8 Missense_Mutation p.E620K 0.15 deleterious(0) probably_damaging(0.998) TCGA-EB-A550-01 7 129813639 129813667 CACATTCTTTTAGGAGAGGTTTATACCTG - TMEM209 Splice_Site p.X486_splice 0.21 TCGA-EB-A550-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-EB-A550-01 7 18066457 18066457 G A PRPS1L1 Missense_Mutation p.P317S 0.19 deleterious(0) possibly_damaging(0.749) TCGA-EB-A550-01 7 18669001 18669001 C T HDAC9 Silent p.S231S 0.13 TCGA-EB-A550-01 7 20199085 20199085 G A MACC1 Missense_Mutation p.P300L 0.18 tolerated(0.05) possibly_damaging(0.894) TCGA-EB-A550-01 7 27142142 27142142 C T HOXA2 5'UTR 0.23 TCGA-EB-A550-01 7 2946124 2946124 G A CARD11 3'UTR 0.25 TCGA-EB-A550-01 7 73456957 73456957 C T ELN Silent p.F82F 0.31 TCGA-EB-A550-01 8 139144854 139144854 T A FAM135B Silent p.G1401G 0.25 TCGA-EB-A550-01 8 1581015 1581015 G A DLGAP2 Missense_Mutation p.G458E 0.15 tolerated(0.18) probably_damaging(0.925) TCGA-EB-A550-01 8 26627893 26627893 C T ADRA1A Missense_Mutation p.D392N 0.17 tolerated_low_confidence(0.13) benign(0.004) TCGA-EB-A550-01 8 39537685 39537685 G A ADAM18 Missense_Mutation p.M587I 0.29 tolerated(0.34) benign(0.009) TCGA-EB-A550-01 8 67759432 67759432 C T SGK3 Missense_Mutation p.P360L 0.19 deleterious(0) possibly_damaging(0.736) TCGA-EB-A550-01 9 103002397 103002397 C T INVS Missense_Mutation p.P224L 0.23 deleterious(0) benign(0.395) TCGA-EB-A550-01 9 107332290 107332290 C T OR13C8 Missense_Mutation p.S281F 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-EB-A550-01 9 112153452 112153452 C T PTPN3 Missense_Mutation p.G691E 0.19 deleterious(0.04) benign(0.018) TCGA-EB-A550-01 9 125289086 125289086 G A OR1N1 Missense_Mutation p.R163W 0.21 deleterious(0.01) benign(0.005) TCGA-EB-A550-01 9 125390938 125390938 G A OR1B1 Missense_Mutation p.P293S 0.24 deleterious(0.01) benign(0.163) TCGA-EB-A550-01 9 32632916 32632916 G A TAF1L Missense_Mutation p.R888C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EB-A550-01 9 74526475 74526475 A G C9orf85 5'UTR 0.26 TCGA-EB-A550-01 X 102529127 102529127 C T TCEAL5 Missense_Mutation p.R122K 0.22 tolerated(0.93) probably_damaging(0.999) TCGA-EB-A550-01 X 134186149 134186149 G A FAM127B 5'UTR 0.32 TCGA-EB-A550-01 X 140996515 140996515 G A MAGEC1 Missense_Mutation p.D1109N 0.29 deleterious(0.01) unknown(0) TCGA-EB-A550-01 X 141291469 141291469 G A MAGEC2 Missense_Mutation p.S102F 0.21 deleterious(0) probably_damaging(0.951) TCGA-EB-A550-01 X 152158703 152158703 C T PNMA5 3'UTR 0.23 TCGA-EB-A550-01 X 17047688 17047688 G A REPS2 Missense_Mutation p.G238E 0.21 deleterious(0.05) possibly_damaging(0.544) TCGA-EB-A550-01 X 2184893 2184893 G A DHRSX Missense_Mutation p.L162F 0.24 deleterious(0.02) probably_damaging(1) TCGA-EB-A550-01 X 22002481 22002481 T C SMS Silent p.F270F 0.23 TCGA-EB-A550-01 X 3235586 3235586 G A MXRA5 Missense_Mutation p.P2046S 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A550-01 X 3239627 3239627 C T MXRA5 Missense_Mutation p.E1367K 0.26 tolerated(0.31) benign(0.005) TCGA-EB-A550-01 X 3573287 3573287 T C PRKX Missense_Mutation p.I168V 0.19 tolerated(0.14) benign(0.315) TCGA-EB-A550-01 X 37935925 37935925 G A SYTL5 Silent p.R220R 0.20 TCGA-EB-A550-01 X 48382408 48382408 C T EBP Silent p.F83F 0.25 TCGA-EB-A550-01 X 48751090 48751090 G A TIMM17B Silent p.F197F 0.21 TCGA-EB-A550-01 X 48976135 48976135 G A GPKOW Silent p.P163P 0.24 TCGA-EB-A550-01 X 49022655 49022655 G A MAGIX Missense_Mutation p.E308K 0.23 tolerated(0.14) possibly_damaging(0.711) TCGA-EB-A550-01 X 50118002 50118002 C T DGKK RNA 0.27 TCGA-EB-A550-01 X 50377847 50377847 C T SHROOM4 Missense_Mutation p.R409H 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A550-01 X 50659378 50659378 C A BMP15 Missense_Mutation p.P317Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-EB-A550-01 X 73070984 73070984 C T XIST RNA 0.21 TCGA-EB-A550-01 X 84342630 84342630 G A APOOL Missense_Mutation p.M251I 0.36 tolerated(0.11) benign(0.005) TCGA-EB-A550-01 X 91873700 91873700 C T PCDH11X Missense_Mutation p.R1269C 0.27 deleterious_low_confidence(0.01) benign(0.002) TCGA-EB-A551-01 10 103901068 103901068 C T PPRC1 Missense_Mutation p.P935S 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.504) TCGA-EB-A551-01 10 106924108 106924108 T A SORCS3 Missense_Mutation p.S594T 0.23 tolerated(1) benign(0.145) TCGA-EB-A551-01 10 116048759 116048759 G A VWA2 Missense_Mutation p.E545K 0.22 deleterious(0.02) benign(0.19) TCGA-EB-A551-01 10 123274651 123274651 G A FGFR2 Missense_Mutation p.P424S 0.22 deleterious(0) possibly_damaging(0.819) TCGA-EB-A551-01 10 123954588 123954588 G A TACC2 Silent p.P1956P 0.25 TCGA-EB-A551-01 10 124339111 124339111 G A DMBT1 Missense_Mutation p.A233T 0.24 tolerated(0.08) possibly_damaging(0.573) TCGA-EB-A551-01 10 125506412 125506412 C T CPXM2 Silent p.R713R 0.22 TCGA-EB-A551-01 10 125506413 125506413 C T CPXM2 Missense_Mutation p.R713K 0.22 tolerated(0.7) benign(0.174) TCGA-EB-A551-01 10 127697639 127697639 A T FANK1 Missense_Mutation p.N289I 0.20 deleterious(0) probably_damaging(0.966) TCGA-EB-A551-01 10 128859995 128859995 C T DOCK1 Silent p.I779I 0.38 TCGA-EB-A551-01 10 133107494 133107494 G A TCERG1L Silent p.V137V 0.37 TCGA-EB-A551-01 10 134912145 134912145 G C GPR123 Missense_Mutation p.A45P 0.22 deleterious(0.03) possibly_damaging(0.889) TCGA-EB-A551-01 10 20436798 20436798 C T PLXDC2 Silent p.L250L 0.14 TCGA-EB-A551-01 10 26463396 26463396 G A MYO3A Silent p.E1401E 0.20 TCGA-EB-A551-01 10 30318009 30318009 G A KIAA1462 Silent p.P356P 0.19 TCGA-EB-A551-01 10 30318010 30318010 G A KIAA1462 Missense_Mutation p.P356L 0.19 deleterious(0) probably_damaging(0.991) TCGA-EB-A551-01 10 30653795 30653795 A C AL161651.1 3'Flank 0.29 TCGA-EB-A551-01 10 43615055 43615055 G A RET Silent p.G823G 0.24 TCGA-EB-A551-01 10 43619149 43619149 C T RET Silent p.I944I 0.21 TCGA-EB-A551-01 10 47087528 47087528 C T NPY4R Missense_Mutation p.H249Y 0.06 deleterious(0.02) benign(0.047) TCGA-EB-A551-01 10 53814261 53814261 A G PRKG1 Silent p.G260G 0.20 TCGA-EB-A551-01 10 61832013 61832013 G A ANK3 Missense_Mutation p.H2876Y 0.18 benign(0.069) TCGA-EB-A551-01 10 62547884 62547884 T C CDK1 Silent p.L129L 0.18 TCGA-EB-A551-01 10 62547926 62547926 A T CDK1 Nonsense_Mutation p.K143* 0.12 TCGA-EB-A551-01 10 69991095 69991095 C G ATOH7 Missense_Mutation p.E114Q 0.15 deleterious(0) possibly_damaging(0.882) TCGA-EB-A551-01 10 70243342 70243342 G A SLC25A16 Silent p.T282T 0.19 TCGA-EB-A551-01 10 70644586 70644586 G A STOX1 Missense_Mutation p.R345Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 10 75936578 75936578 G A ADK Intron 0.21 TCGA-EB-A551-01 10 78943231 78943231 G A KCNMA1 Silent p.F252F 0.22 TCGA-EB-A551-01 10 8006663 8006663 G A TAF3 Missense_Mutation p.R397Q 0.22 deleterious(0) possibly_damaging(0.793) TCGA-EB-A551-01 10 81058192 81058192 C T ZMIZ1 Silent p.Y507Y 0.17 TCGA-EB-A551-01 10 94409668 94409668 T A KIF11 Missense_Mutation p.D949E 0.14 tolerated(1) benign(0.004) TCGA-EB-A551-01 11 118133675 118133675 G A MPZL2 Missense_Mutation p.R66C 0.26 deleterious(0) probably_damaging(0.976) TCGA-EB-A551-01 11 11977655 11977655 C T USP47 Missense_Mutation p.P1266L 0.16 deleterious(0) probably_damaging(0.948) TCGA-EB-A551-01 11 124267040 124267040 C T OR8B3 Missense_Mutation p.D70N 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A551-01 11 1269216 1269216 G A MUC5B Silent p.T3702T 0.15 TCGA-EB-A551-01 11 1774624 1774624 C T CTSD 3'UTR 0.22 TCGA-EB-A551-01 11 20530048 20530048 G A PRMT3 3'UTR 0.33 TCGA-EB-A551-01 11 27384779 27384779 G A CCDC34 5'UTR 0.36 TCGA-EB-A551-01 11 43913596 43913596 A G ALKBH3 Missense_Mutation p.T126A 0.24 tolerated(0.36) benign(0.034) TCGA-EB-A551-01 11 4661245 4661245 C A OR51D1 Missense_Mutation p.F75L 0.16 deleterious(0.01) benign(0.02) TCGA-EB-A551-01 11 4661754 4661754 G A OR51D1 Missense_Mutation p.R245K 0.21 tolerated(0.38) benign(0.002) TCGA-EB-A551-01 11 47355259 47355259 G A MYBPC3 Silent p.P1013P 0.16 TCGA-EB-A551-01 11 48267111 48267111 C T OR4X2 Silent p.I152I 0.20 TCGA-EB-A551-01 11 4967519 4967519 G A OR51A4 Missense_Mutation p.P271L 0.17 deleterious(0.04) benign(0.168) TCGA-EB-A551-01 11 5410669 5410669 T G OR51M1 Missense_Mutation p.L14R 0.22 deleterious(0.02) possibly_damaging(0.667) TCGA-EB-A551-01 11 55135722 55135722 C T OR4A15 Silent p.S121S 0.21 TCGA-EB-A551-01 11 55406622 55406622 C T OR4P4 Silent p.F263F 0.25 TCGA-EB-A551-01 11 55681153 55681153 T A OR5W2 Missense_Mutation p.K302N 0.21 deleterious(0.04) benign(0.027) TCGA-EB-A551-01 11 5632384 5632384 A C TRIM6 Missense_Mutation p.T455P 0.22 tolerated(0.12) benign(0.066) TCGA-EB-A551-01 11 58207172 58207172 G A OR5B12 Silent p.F151F 0.17 TCGA-EB-A551-01 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.22 TCGA-EB-A551-01 11 6048610 6048610 A G OR56A1 Missense_Mutation p.F109L 0.20 deleterious(0.02) probably_damaging(0.952) TCGA-EB-A551-01 11 68201220 68201220 G A LRP5 Missense_Mutation p.C1305Y 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 11 73066620 73066620 G A ARHGEF17 Missense_Mutation p.D1166N 0.24 tolerated(0.44) possibly_damaging(0.772) TCGA-EB-A551-01 11 83770385 83770385 C T DLG2 Missense_Mutation p.E298K 0.30 tolerated(0.05) probably_damaging(0.975) TCGA-EB-A551-01 12 100660852 100660852 C T DEPDC4 Translation_Start_Site p.M1? 0.22 tolerated_low_confidence(0.22) benign(0.019) TCGA-EB-A551-01 12 10205295 10205295 G A CLEC9A Silent p.E3E 0.20 TCGA-EB-A551-01 12 108010919 108010919 G A BTBD11 Silent p.E685E 0.16 TCGA-EB-A551-01 12 108985515 108985515 C T TMEM119 Silent p.G215G 0.16 TCGA-EB-A551-01 12 123286316 123286316 C T CCDC62 Silent p.S541S 0.23 TCGA-EB-A551-01 12 124821423 124821423 C T NCOR2 Silent p.K1997K 0.11 TCGA-EB-A551-01 12 130184374 130184374 C T TMEM132D Missense_Mutation p.E317K 0.09 deleterious(0.02) benign(0.098) TCGA-EB-A551-01 12 15661592 15661592 C T PTPRO Missense_Mutation p.S452F 0.08 deleterious(0) probably_damaging(0.99) TCGA-EB-A551-01 12 18435547 18435547 A G PIK3C2G Missense_Mutation p.T178A 0.23 tolerated_low_confidence(0.7) benign(0) TCGA-EB-A551-01 12 1943459 1943459 A T LRTM2 Missense_Mutation p.T229S 0.11 tolerated(0.56) benign(0.178) TCGA-EB-A551-01 12 27113474 27113474 C T FGFR1OP2 Silent p.S141S 0.10 TCGA-EB-A551-01 12 40760814 40760814 T C LRRK2 Missense_Mutation p.L2466P 0.18 tolerated(0.14) benign(0.03) TCGA-EB-A551-01 12 43944924 43944924 G A ADAMTS20 Missense_Mutation p.R81C 0.16 deleterious(0) probably_damaging(0.988) TCGA-EB-A551-01 12 44136280 44136280 C T PUS7L Missense_Mutation p.A448T 0.10 deleterious(0) possibly_damaging(0.529) TCGA-EB-A551-01 12 50039604 50039604 G A FMNL3 Silent p.P1026P 0.16 TCGA-EB-A551-01 12 50039605 50039605 G A FMNL3 Missense_Mutation p.P1026L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-EB-A551-01 12 52200647 52200647 G A SCN8A Missense_Mutation p.E1793K 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-EB-A551-01 12 53186080 53186080 C T KRT3 Silent p.Q377Q 0.16 TCGA-EB-A551-01 12 54943697 54943697 A T PDE1B Missense_Mutation p.E14V 0.08 deleterious_low_confidence(0.01) benign(0.403) TCGA-EB-A551-01 12 56221800 56221800 G A DNAJC14 Missense_Mutation p.P215S 0.09 tolerated(0.13) benign(0.052) TCGA-EB-A551-01 12 67699631 67699631 C T CAND1 Missense_Mutation p.S728L 0.19 tolerated(0.22) benign(0.021) TCGA-EB-A551-01 12 72038804 72038804 C T ZFC3H1 Missense_Mutation p.A378T 0.26 deleterious(0) probably_damaging(0.992) TCGA-EB-A551-01 12 7463332 7463332 G A ACSM4 Missense_Mutation p.E204K 0.24 tolerated(0.17) benign(0.084) TCGA-EB-A551-01 12 7640024 7640024 C T CD163 Missense_Mutation p.D661N 0.23 tolerated(0.66) benign(0.07) TCGA-EB-A551-01 12 7848086 7848086 C T GDF3 Missense_Mutation p.G80E 0.27 deleterious(0) probably_damaging(0.989) TCGA-EB-A551-01 12 99837539 99837539 C T ANKS1B Missense_Mutation p.R496K 0.20 tolerated(0.26) benign(0.175) TCGA-EB-A551-01 13 102379059 102379059 G A FGF14 Silent p.A175A 0.20 TCGA-EB-A551-01 13 103704997 103704997 C T SLC10A2 Nonsense_Mutation p.W186* 0.20 TCGA-EB-A551-01 13 39266413 39266413 G A FREM2 Missense_Mutation p.M1644I 0.23 tolerated(0.1) benign(0.024) TCGA-EB-A551-01 13 43474449 43474449 C T EPSTI1 Missense_Mutation p.R282K 0.21 tolerated(0.15) benign(0.046) TCGA-EB-A551-01 13 48955457 48955457 G A RB1 Missense_Mutation p.A525T 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-EB-A551-01 13 49649426 49649426 T C FNDC3A Missense_Mutation p.V34A 0.25 deleterious(0) benign(0.001) TCGA-EB-A551-01 13 78335167 78335167 G T SLAIN1 Missense_Mutation p.R376L 0.17 deleterious(0) possibly_damaging(0.858) TCGA-EB-A551-01 13 99091066 99091066 C T FARP1 Silent p.I761I 0.21 TCGA-EB-A551-01 14 20216300 20216300 C T OR4Q3 Silent p.F238F 0.13 TCGA-EB-A551-01 14 20216515 20216515 C T OR4Q3 Missense_Mutation p.P310L 0.21 tolerated_low_confidence(1) benign(0) TCGA-EB-A551-01 14 20444192 20444192 C T OR4K15 Missense_Mutation p.S172L 0.27 deleterious(0) possibly_damaging(0.794) TCGA-EB-A551-01 14 20502391 20502391 C T OR4K13 Missense_Mutation p.S176N 0.24 tolerated(0.19) benign(0.06) TCGA-EB-A551-01 14 21486619 21486619 G A NDRG2 Silent p.L286L 0.26 TCGA-EB-A551-01 14 22133434 22133434 C T OR4E2 Silent p.I46I 0.25 TCGA-EB-A551-01 14 22133575 22133575 C T OR4E2 Silent p.S93S 0.30 TCGA-EB-A551-01 14 79181133 79181133 C T NRXN3 Silent p.F192F 0.25 TCGA-EB-A551-01 14 90651132 90651132 G A KCNK13 Missense_Mutation p.D338N 0.21 deleterious(0.02) possibly_damaging(0.58) TCGA-EB-A551-01 14 92058250 92058250 C T CATSPERB Missense_Mutation p.D936N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A551-01 14 96131359 96131359 G A TCL6 RNA 0.42 TCGA-EB-A551-01 15 25307485 25307485 G A SNORD116-5 RNA 0.25 TCGA-EB-A551-01 15 25479233 25479233 G A SNORD115-33 3'Flank 0.22 TCGA-EB-A551-01 15 41689288 41689288 C T NDUFAF1 5'UTR 0.27 TCGA-EB-A551-01 15 42116130 42116130 C T MAPKBP1 Missense_Mutation p.P1368S 0.24 tolerated(0.16) benign(0.002) TCGA-EB-A551-01 15 43821949 43821949 C T MAP1A Missense_Mutation p.R2713C 0.20 probably_damaging(0.998) TCGA-EB-A551-01 15 44175970 44175970 T C FRMD5 Missense_Mutation p.T356A 0.30 tolerated(0.06) benign(0.055) TCGA-EB-A551-01 15 52646082 52646082 G A MYO5A Missense_Mutation p.R1185C 0.27 deleterious(0.02) benign(0.009) TCGA-EB-A551-01 15 52646083 52646083 G A MYO5A Silent p.L1184L 0.27 TCGA-EB-A551-01 15 52897344 52897344 G A FAM214A Missense_Mutation p.L816F 0.34 deleterious(0) probably_damaging(0.982) TCGA-EB-A551-01 15 63555797 63555797 C T RAB8B Silent p.F201F 0.27 TCGA-EB-A551-01 15 73636093 73636093 G A HCN4 Missense_Mutation p.P281L 0.16 deleterious(0.02) benign(0.126) TCGA-EB-A551-01 15 73996575 73996577 CAC TA CD276 Frame_Shift_Del p.T378Rfs*2 0.27 TCGA-EB-A551-01 15 75641541 75641541 C T NEIL1 Silent p.L99L 0.08 TCGA-EB-A551-01 15 80762760 80762760 C T ARNT2 Silent p.F132F 0.12 TCGA-EB-A551-01 15 85400185 85400185 C T ALPK3 Missense_Mutation p.P941L 0.17 tolerated_low_confidence(0.12) benign(0.004) TCGA-EB-A551-01 15 86189127 86189127 G A AKAP13 Missense_Mutation p.S1439N 0.41 deleterious(0.02) benign(0.052) TCGA-EB-A551-01 15 90172280 90172280 C T KIF7 Silent p.L1197L 0.22 TCGA-EB-A551-01 16 12798702 12798702 G A CPPED1 Missense_Mutation p.S165F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 16 1842365 1842365 C T IGFALS Silent p.V56V 0.24 TCGA-EB-A551-01 16 21069510 21069510 C T DNAH3 Missense_Mutation p.R1274Q 0.10 deleterious(0) probably_damaging(0.995) TCGA-EB-A551-01 16 22149816 22149816 C T VWA3A Missense_Mutation p.P759S 0.16 tolerated(0.46) benign(0.022) TCGA-EB-A551-01 16 25189507 25189507 C T LCMT1 3'UTR 0.42 TCGA-EB-A551-01 16 27454357 27454357 G A IL21R Missense_Mutation p.E143K 0.20 deleterious(0.03) benign(0.057) TCGA-EB-A551-01 16 2815945 2815945 T G SRRM2 Missense_Mutation p.S1806A 0.18 unknown(0) TCGA-EB-A551-01 16 28515210 28515210 C T IL27 Missense_Mutation p.A65T 0.14 deleterious(0.01) possibly_damaging(0.641) TCGA-EB-A551-01 16 28515211 28515211 C T IL27 Silent p.Q64Q 0.14 TCGA-EB-A551-01 16 2980813 2980813 A G FLYWCH1 Missense_Mutation p.E242G 0.14 tolerated(0.08) benign(0.057) TCGA-EB-A551-01 16 29891314 29891314 G A SEZ6L2 Missense_Mutation p.R482C 0.20 deleterious(0.04) possibly_damaging(0.86) TCGA-EB-A551-01 16 30749104 30749104 C T SRCAP Silent p.P2581P 0.16 TCGA-EB-A551-01 16 31427835 31427835 C T ITGAD Silent p.T789T 0.14 TCGA-EB-A551-01 16 31471015 31471015 G A ARMC5 Missense_Mutation p.G57E 0.30 deleterious(0) unknown(0) TCGA-EB-A551-01 16 31927110 31927110 C T ZNF267 Missense_Mutation p.H514Y 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-EB-A551-01 16 50388358 50388358 G A BRD7 Nonsense_Mutation p.Q142* 0.41 TCGA-EB-A551-01 16 67692058 67692058 G A ACD Missense_Mutation p.P432L 0.26 deleterious(0) possibly_damaging(0.804) TCGA-EB-A551-01 16 70897051 70897051 C T HYDIN Missense_Mutation p.E3836K 0.33 possibly_damaging(0.801) TCGA-EB-A551-01 16 815696 815696 C T MSLN Silent p.I267I 0.16 TCGA-EB-A551-01 17 12647580 12647580 C T MYOCD Silent p.H266H 0.31 TCGA-EB-A551-01 17 1959984 1959984 G A HIC1 Silent p.T19T 0.20 TCGA-EB-A551-01 17 3143989 3143989 G A OR1D4 RNA 0.15 TCGA-EB-A551-01 17 46846566 46846566 C T TTLL6 Missense_Mutation p.E821K 0.16 tolerated(0.32) benign(0.029) TCGA-EB-A551-01 17 5042402 5042402 C T USP6 Intron 0.18 TCGA-EB-A551-01 17 60767532 60767532 G A MRC2 Missense_Mutation p.R1253Q 0.18 tolerated(0.4) benign(0.07) TCGA-EB-A551-01 17 61607531 61607531 C T KCNH6 Silent p.F129F 0.29 TCGA-EB-A551-01 17 7330636 7330636 G A C17orf74 Silent p.P442P 0.15 TCGA-EB-A551-01 17 73809246 73809246 A G UNK Missense_Mutation p.Y237C 0.36 deleterious(0) probably_damaging(0.988) TCGA-EB-A551-01 17 74013928 74013928 C T EVPL Silent p.L534L 0.22 TCGA-EB-A551-01 17 7734088 7734088 G A DNAH2 Nonsense_Mutation p.W4053* 0.26 TCGA-EB-A551-01 17 7734089 7734089 G A DNAH2 Nonsense_Mutation p.W4053* 0.26 TCGA-EB-A551-01 17 80790377 80790377 C T ZNF750 5'UTR 0.17 TCGA-EB-A551-01 17 9631401 9631401 G A USP43 Silent p.K822K 0.24 TCGA-EB-A551-01 18 12028097 12028097 C T IMPA2 Silent p.T182T 0.09 TCGA-EB-A551-01 18 21413915 21413915 C T LAMA3 Silent p.L983L 0.14 TCGA-EB-A551-01 18 24442278 24442278 C T AQP4 Silent p.V105V 0.15 TCGA-EB-A551-01 18 24496451 24496451 C T CHST9 Silent p.G368G 0.20 TCGA-EB-A551-01 18 28671037 28671037 G A DSC2 Missense_Mutation p.S143L 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 18 32707010 32707010 G A MAPRE2 Missense_Mutation p.D237N 0.10 tolerated(0.55) benign(0.026) TCGA-EB-A551-01 18 43262428 43262428 G A SLC14A2 Missense_Mutation p.E903K 0.15 tolerated(1) benign(0.16) TCGA-EB-A551-01 18 51057112 51057112 C T DCC 3'UTR 0.15 TCGA-EB-A551-01 18 52258559 52258559 G A DYNAP Missense_Mutation p.E42K 0.10 tolerated(0.35) benign(0.021) TCGA-EB-A551-01 18 55144023 55144023 G A ONECUT2 3'UTR 0.29 TCGA-EB-A551-01 19 12979587 12979587 G A MAST1 Silent p.E899E 0.40 TCGA-EB-A551-01 19 22271256 22271256 G A ZNF257 Missense_Mutation p.G235E 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A551-01 19 35842709 35842709 C T FFAR1 Silent p.A85A 0.29 TCGA-EB-A551-01 19 38876120 38876120 G T GGN Nonsense_Mutation p.C594* 0.24 TCGA-EB-A551-01 19 41512843 41512843 C T CYP2B6 Missense_Mutation p.S173F 0.21 tolerated(0.47) possibly_damaging(0.744) TCGA-EB-A551-01 19 42355696 42355696 C T DMRTC2 Nonsense_Mutation p.R346* 0.27 TCGA-EB-A551-01 19 43372053 43372053 G A PSG1 3'UTR 0.29 TCGA-EB-A551-01 19 44610685 44610685 C T ZNF224 Silent p.F124F 0.26 TCGA-EB-A551-01 19 49206380 49206380 G A FUT2 Missense_Mutation p.G56E 0.20 tolerated(1) benign(0.008) TCGA-EB-A551-01 19 50461906 50461906 C T SIGLEC11 Missense_Mutation p.V453M 0.23 deleterious(0) probably_damaging(0.987) TCGA-EB-A551-01 19 51165351 51165351 G A SHANK1 Silent p.F2119F 0.32 TCGA-EB-A551-01 19 5222734 5222734 G A PTPRS Silent p.P1023P 0.55 TCGA-EB-A551-01 19 53993751 53993751 G A ZNF813 Missense_Mutation p.E89K 0.27 tolerated(0.16) benign(0.076) TCGA-EB-A551-01 19 55451223 55451223 C T NLRP7 Missense_Mutation p.E322K 0.37 deleterious(0.05) probably_damaging(0.949) TCGA-EB-A551-01 19 8661241 8661241 C T ADAMTS10 Silent p.E380E 0.50 TCGA-EB-A551-01 19 9059200 9059200 G A MUC16 Missense_Mutation p.P9416S 0.29 unknown(0) TCGA-EB-A551-01 19 9061397 9061397 C T MUC16 Silent p.G8683G 0.43 TCGA-EB-A551-01 19 9065681 9065681 C T MUC16 Silent p.V7255V 0.49 TCGA-EB-A551-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.26 deleterious(0.01) benign(0.045) TCGA-EB-A551-01 1 115576630 115576630 C T TSHB Silent p.L67L 0.22 TCGA-EB-A551-01 1 151497296 151497296 A G CGN Silent p.E516E 0.29 TCGA-EB-A551-01 1 151773511 151773511 C T LINGO4 Nonsense_Mutation p.W557* 0.20 TCGA-EB-A551-01 1 152276398 152276398 C T FLG Missense_Mutation p.G3655E 0.23 unknown(0) TCGA-EB-A551-01 1 152276399 152276399 C T FLG Missense_Mutation p.G3655R 0.23 unknown(0) TCGA-EB-A551-01 1 152277249 152277249 G A FLG Silent p.S3371S 0.45 TCGA-EB-A551-01 1 152281175 152281175 C T FLG Missense_Mutation p.G2063R 0.24 probably_damaging(0.953) TCGA-EB-A551-01 1 152323624 152323624 G A FLG2 Missense_Mutation p.S2213F 0.18 probably_damaging(0.981) TCGA-EB-A551-01 1 154988852 154988852 G A ZBTB7B Silent p.K471K 0.24 TCGA-EB-A551-01 1 155112476 155112476 C A DPM3 Missense_Mutation p.A111S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 1 15766991 15766991 C T CTRC Silent p.I45I 0.12 TCGA-EB-A551-01 1 158436043 158436043 C T OR10K1 Missense_Mutation p.S231F 0.20 deleterious(0) possibly_damaging(0.701) TCGA-EB-A551-01 1 159409854 159409854 C T OR10J1 Silent p.P102P 0.20 TCGA-EB-A551-01 1 160654648 160654648 G A CD48 Intron 0.23 TCGA-EB-A551-01 1 16529044 16529044 G A ARHGEF19 Missense_Mutation p.H645Y 0.15 tolerated(0.15) benign(0.005) TCGA-EB-A551-01 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.38 deleterious(0.02) benign(0.036) TCGA-EB-A551-01 1 180063037 180063037 G A CEP350 Silent p.E2599E 0.26 TCGA-EB-A551-01 1 180243777 180243777 G A LHX4 3'UTR 0.22 TCGA-EB-A551-01 1 182641986 182641986 C T RGS8 5'UTR 0.14 TCGA-EB-A551-01 1 18809386 18809386 C T KLHDC7A Silent p.F637F 0.66 TCGA-EB-A551-01 1 18809486 18809486 G A KLHDC7A Missense_Mutation p.E671K 0.12 deleterious(0) possibly_damaging(0.755) TCGA-EB-A551-01 1 190067261 190067261 G A BRINP3 Missense_Mutation p.H730Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-EB-A551-01 1 198266337 198266337 C T NEK7 Silent p.Y255Y 0.12 TCGA-EB-A551-01 1 201052336 201052336 G A CACNA1S Silent p.I449I 0.31 TCGA-EB-A551-01 1 206821067 206821067 C T DYRK3 Missense_Mutation p.A175V 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-EB-A551-01 1 209824318 209824318 G A LAMB3 5'UTR 0.21 TCGA-EB-A551-01 1 216595254 216595254 G A USH2A Missense_Mutation p.P142L 0.12 benign(0.02) TCGA-EB-A551-01 1 223286310 223286310 G A TLR5 Missense_Mutation p.P22S 0.13 tolerated(0.88) benign(0.009) TCGA-EB-A551-01 1 240072008 240072008 T C CHRM3 Silent p.S419S 0.24 TCGA-EB-A551-01 1 240601402 240601402 T C FMN2 Missense_Mutation p.L1651P 0.43 benign(0.127) TCGA-EB-A551-01 1 248004823 248004823 T C OR11L1 Missense_Mutation p.I126V 0.17 tolerated(0.19) benign(0.017) TCGA-EB-A551-01 1 33985079 33985079 G A CSMD2 3'UTR 0.33 TCGA-EB-A551-01 1 43672527 43672527 T C WDR65 Missense_Mutation p.V560A 0.27 tolerated(0.19) benign(0.106) TCGA-EB-A551-01 1 45228242 45228242 C T KIF2C Missense_Mutation p.S628F 0.29 deleterious(0) probably_damaging(0.985) TCGA-EB-A551-01 1 47406997 47406997 G A CYP4A11 Missense_Mutation p.L37F 0.50 tolerated(0.24) benign(0.008) TCGA-EB-A551-01 1 57340745 57340745 G A C8A Missense_Mutation p.D99N 0.28 deleterious(0.01) possibly_damaging(0.846) TCGA-EB-A551-01 1 57422541 57422541 C T C8B Missense_Mutation p.E98K 0.24 tolerated(0.08) benign(0.382) TCGA-EB-A551-01 1 70300527 70300527 G A LRRC7 Missense_Mutation p.E151K 0.08 deleterious(0) probably_damaging(0.978) TCGA-EB-A551-01 1 74957860 74957860 G A TNNI3K Missense_Mutation p.G855E 0.25 tolerated_low_confidence(0.08) benign(0.422) TCGA-EB-A551-01 1 86960073 86960073 C T CLCA1 Silent p.A628A 0.32 TCGA-EB-A551-01 20 10629238 10629238 G A JAG1 Nonsense_Mutation p.Q510* 0.21 TCGA-EB-A551-01 20 1559237 1559237 G A RP4-576H24.4 Silent p.I59I 0.23 TCGA-EB-A551-01 20 33588607 33588607 G A MYH7B Missense_Mutation p.A1781T 0.17 benign(0.006) TCGA-EB-A551-01 20 42788535 42788535 C T JPH2 Missense_Mutation p.D298N 0.26 deleterious(0.03) probably_damaging(1) TCGA-EB-A551-01 20 43851450 43851450 C T SEMG2 Missense_Mutation p.P393S 0.33 tolerated(0.09) probably_damaging(0.996) TCGA-EB-A551-01 20 50342356 50342356 A T ATP9A Splice_Site p.X109_splice 0.17 TCGA-EB-A551-01 20 54824193 54824193 C T MC3R Silent p.I98I 0.20 TCGA-EB-A551-01 20 60885527 60885527 G A LAMA5 Silent p.G3516G 0.13 TCGA-EB-A551-01 21 10944788 10944788 C T TPTE Splice_Site p.X149_splice 0.10 TCGA-EB-A551-01 21 11047521 11047521 C T BAGE2 RNA 0.06 TCGA-EB-A551-01 21 15535805 15535805 C T LIPI Missense_Mutation p.R335K 0.21 tolerated(0.86) benign(0.023) TCGA-EB-A551-01 21 17199325 17199325 C T USP25 Missense_Mutation p.S499L 0.15 tolerated(0.09) benign(0.213) TCGA-EB-A551-01 21 17250704 17250704 G A USP25 Silent p.P1026P 0.18 TCGA-EB-A551-01 21 22910210 22910210 C T NCAM2 Missense_Mutation p.P816S 0.29 tolerated(0.05) benign(0.011) TCGA-EB-A551-01 21 38593668 38593668 A G DSCR3 3'Flank 0.23 TCGA-EB-A551-01 21 44589345 44589345 C T CRYAA Missense_Mutation p.P46S 0.15 deleterious(0.04) probably_damaging(0.964) TCGA-EB-A551-01 21 45876556 45876556 C T LRRC3 Missense_Mutation p.S10L 0.13 tolerated(0.13) benign(0.002) TCGA-EB-A551-01 21 47542827 47542827 G A COL6A2 Silent p.G549G 0.19 TCGA-EB-A551-01 22 16449102 16449102 G A OR11H1 Missense_Mutation p.L235F 0.38 deleterious(0.01) possibly_damaging(0.658) TCGA-EB-A551-01 22 22664166 22664166 G A BMS1P20 RNA 0.05 TCGA-EB-A551-01 22 22930962 22930962 C T IGLV2-33 Missense_Mutation p.H53Y 0.40 tolerated_low_confidence(1) benign(0) TCGA-EB-A551-01 22 26242165 26242165 G A MYO18B Missense_Mutation p.R1156K 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 22 35463043 35463043 C T ISX 5'UTR 0.28 TCGA-EB-A551-01 22 37524354 37524354 G A IL2RB Missense_Mutation p.P480S 0.33 tolerated(0.18) possibly_damaging(0.453) TCGA-EB-A551-01 22 38891817 38891817 A C DDX17 Missense_Mutation p.I288M 0.20 deleterious(0.04) possibly_damaging(0.757) TCGA-EB-A551-01 22 42793914 42793914 G A NFAM1 Missense_Mutation p.P205S 0.17 tolerated(0.3) benign(0.131) TCGA-EB-A551-01 22 45281771 45281771 G A PHF21B Silent p.I415I 0.18 TCGA-EB-A551-01 22 50689354 50689354 C T HDAC10 Intron 0.32 TCGA-EB-A551-01 2 103300733 103300733 C T SLC9A2 Missense_Mutation p.P455S 0.18 tolerated(0.06) probably_damaging(1) TCGA-EB-A551-01 2 107007371 107007371 C T PLGLA RNA 0.17 TCGA-EB-A551-01 2 110873301 110873301 G A MALL Silent p.F23F 0.19 TCGA-EB-A551-01 2 125627312 125627312 A G CNTNAP5 Missense_Mutation p.R1136G 0.29 deleterious(0) possibly_damaging(0.744) TCGA-EB-A551-01 2 130878131 130878131 C T POTEF 5'UTR 0.20 TCGA-EB-A551-01 2 133539545 133539545 C T NCKAP5 Silent p.T1613T 0.22 TCGA-EB-A551-01 2 160833922 160833922 G A PLA2R1 Silent p.V758V 0.23 TCGA-EB-A551-01 2 160898594 160898594 C T PLA2R1 Nonsense_Mutation p.W203* 0.22 TCGA-EB-A551-01 2 1670013 1670013 G A PXDN Missense_Mutation p.H422Y 0.19 tolerated(0.44) benign(0.014) TCGA-EB-A551-01 2 167319026 167319026 C T SCN7A Missense_Mutation p.G319E 0.20 deleterious(0.02) probably_damaging(1) TCGA-EB-A551-01 2 169938086 169938086 G A DHRS9 5'UTR 0.28 TCGA-EB-A551-01 2 171675156 171675156 C T GAD1 Missense_Mutation p.P19S 0.22 tolerated_low_confidence(0.06) benign(0.073) TCGA-EB-A551-01 2 171702028 171702028 C G GAD1 Missense_Mutation p.S255C 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A551-01 2 179435608 179435608 C T TTN Missense_Mutation p.R25084Q 0.23 TCGA-EB-A551-01 2 179702423 179702423 C T CCDC141 Missense_Mutation p.E1175K 0.16 tolerated(0.14) benign(0) TCGA-EB-A551-01 2 192701396 192701396 G A SDPR Silent p.S177S 0.17 TCGA-EB-A551-01 2 20205697 20205697 G A MATN3 Nonsense_Mutation p.Q200* 0.17 TCGA-EB-A551-01 2 207170182 207170182 G A ZDBF2 Silent p.P310P 0.16 TCGA-EB-A551-01 2 210557853 210557853 G A MAP2 Missense_Mutation p.G320E 0.29 tolerated_low_confidence(0.06) probably_damaging(0.939) TCGA-EB-A551-01 2 219513971 219513971 G A ZNF142 Silent p.H220H 0.21 TCGA-EB-A551-01 2 219513972 219513972 T A ZNF142 Missense_Mutation p.H220L 0.21 deleterious(0.01) benign(0.227) TCGA-EB-A551-01 2 225266263 225266263 C T FAM124B Missense_Mutation p.E75K 0.25 deleterious(0.03) benign(0.004) TCGA-EB-A551-01 2 234652078 234652078 G A UGT1A10 Intron 0.21 TCGA-EB-A551-01 2 29246029 29246029 A G FAM179A Missense_Mutation p.H530R 0.40 deleterious(0.02) possibly_damaging(0.897) TCGA-EB-A551-01 2 31189098 31189098 G T GALNT14 Missense_Mutation p.R129S 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-EB-A551-01 2 42284434 42284434 C T PKDCC Silent p.S432S 0.14 TCGA-EB-A551-01 2 45169477 45169477 C T SIX3 Silent p.S78S 0.23 TCGA-EB-A551-01 2 46739216 46739216 C T ATP6V1E2 Missense_Mutation p.R212Q 0.25 deleterious(0.05) possibly_damaging(0.499) TCGA-EB-A551-01 2 68620305 68620305 G A PLEK Silent p.R258R 0.28 TCGA-EB-A551-01 2 73717313 73717313 A G ALMS1 Missense_Mutation p.T2742A 0.17 possibly_damaging(0.904) TCGA-EB-A551-01 2 74185952 74185952 C T DGUOK 3'UTR 0.31 TCGA-EB-A551-01 2 74689971 74689971 C T MOGS Silent p.G315G 0.21 TCGA-EB-A551-01 2 75720473 75720473 C T EVA1A Silent p.E116E 0.24 TCGA-EB-A551-01 2 89399792 89399792 G A IGKV1-16 Silent p.L12L 0.21 TCGA-EB-A551-01 2 89976386 89976386 G A IGKV2D-30 Missense_Mutation p.R86K 0.20 tolerated(0.05) benign(0.283) TCGA-EB-A551-01 2 90139140 90139140 C T IGKV1D-16 Silent p.L12L 0.06 TCGA-EB-A551-01 2 95481750 95481750 C T ANKRD20A8P Intron 0.19 TCGA-EB-A551-01 2 98341558 98341558 G A ZAP70 Missense_Mutation p.E136K 0.21 tolerated(0.14) benign(0.096) TCGA-EB-A551-01 3 107520049 107520049 A T BBX Missense_Mutation p.T887S 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-EB-A551-01 3 112991943 112991943 C T BOC Missense_Mutation p.S330F 0.19 deleterious(0) possibly_damaging(0.853) TCGA-EB-A551-01 3 113377752 113377752 G A KIAA2018 Missense_Mutation p.P926L 0.16 benign(0.002) TCGA-EB-A551-01 3 113379081 113379081 G A KIAA2018 Missense_Mutation p.S483F 0.28 possibly_damaging(0.58) TCGA-EB-A551-01 3 113672716 113672716 C T ZDHHC23 Missense_Mutation p.L111F 0.21 deleterious(0.02) benign(0.103) TCGA-EB-A551-01 3 119886213 119886213 C T GPR156 Missense_Mutation p.R704Q 0.30 tolerated(0.66) benign(0) TCGA-EB-A551-01 3 134920469 134920469 G A EPHB1 Missense_Mutation p.D762N 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A551-01 3 138255915 138255915 C T CEP70 Intron 0.19 TCGA-EB-A551-01 3 142567141 142567141 C T PCOLCE2 Missense_Mutation p.M122I 0.18 tolerated(0.14) benign(0.02) TCGA-EB-A551-01 3 145796966 145796966 C T PLOD2 Silent p.R479R 0.23 TCGA-EB-A551-01 3 150293442 150293442 G A EIF2A Missense_Mutation p.E464K 0.12 tolerated(0.09) benign(0.089) TCGA-EB-A551-01 3 173998973 173998973 T G NLGN1 Missense_Mutation p.I784M 0.21 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-EB-A551-01 3 184769805 184769805 G A VPS8 Missense_Mutation p.E1427K 0.16 tolerated(0.09) benign(0.031) TCGA-EB-A551-01 3 193220354 193220354 G A ATP13A4 Silent p.L103L 0.16 TCGA-EB-A551-01 3 26751443 26751443 A G LRRC3B Missense_Mutation p.N94D 0.18 tolerated(1) benign(0.015) TCGA-EB-A551-01 3 26751445 26751445 C A LRRC3B Missense_Mutation p.N94K 0.17 deleterious(0.01) possibly_damaging(0.542) TCGA-EB-A551-01 3 30713295 30713295 G A TGFBR2 Missense_Mutation p.R232Q 0.28 tolerated(0.34) benign(0.001) TCGA-EB-A551-01 3 36873252 36873252 G A TRANK1 Missense_Mutation p.P2564S 0.33 tolerated(0.06) probably_damaging(1) TCGA-EB-A551-01 3 39166640 39166665 GGGAAGTCTGAGGTCAGAGCTCCCTG - TTC21A Splice_Site p.X403_splice 0.15 TCGA-EB-A551-01 3 44952571 44952571 G A TGM4 Missense_Mutation p.M576I 0.14 tolerated(0.43) benign(0.003) TCGA-EB-A551-01 3 48717534 48717534 C T NCKIPSD Silent p.E407E 0.22 TCGA-EB-A551-01 3 49699191 49699191 C T BSN Missense_Mutation p.L3305F 0.24 unknown(0) TCGA-EB-A551-01 3 54930914 54930914 G A CACNA2D3 Intron 0.25 TCGA-EB-A551-01 3 64526881 64526881 G A ADAMTS9 Missense_Mutation p.P1804L 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 3 8787316 8787316 C T CAV3 Silent p.Y73Y 0.14 TCGA-EB-A551-01 3 9730737 9730737 C T MTMR14 Silent p.V468V 0.15 TCGA-EB-A551-01 3 9874820 9874820 C T TTLL3 Silent p.I672I 0.16 TCGA-EB-A551-01 3 9874821 9874821 C T TTLL3 Missense_Mutation p.R673W 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-EB-A551-01 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.13 probably_damaging(1) TCGA-EB-A551-01 4 108868674 108868674 T C CYP2U1 Silent p.H423H 0.11 TCGA-EB-A551-01 4 113540076 113540076 G A C4orf21 Silent p.F374F 0.10 TCGA-EB-A551-01 4 128626749 128626749 T C INTU Missense_Mutation p.Y524H 0.11 deleterious(0.03) possibly_damaging(0.723) TCGA-EB-A551-01 4 147830235 147830235 C T TTC29 Missense_Mutation p.D115N 0.11 deleterious(0) possibly_damaging(0.507) TCGA-EB-A551-01 4 156632310 156632310 C T GUCY1A3 Silent p.I331I 0.22 TCGA-EB-A551-01 4 159569687 159569687 C T RXFP1 Missense_Mutation p.S598F 0.17 deleterious(0) possibly_damaging(0.61) TCGA-EB-A551-01 4 170345807 170345807 G A NEK1 Missense_Mutation p.S1040F 0.12 deleterious(0.01) benign(0.065) TCGA-EB-A551-01 4 175238605 175238605 A G CEP44 Intron 0.27 TCGA-EB-A551-01 4 183960120 183960120 C T FAM92A1P2 RNA 0.16 TCGA-EB-A551-01 4 187557879 187557879 C T FAT1 Missense_Mutation p.D1278N 0.15 probably_damaging(1) TCGA-EB-A551-01 4 23833320 23833320 C T PPARGC1A Missense_Mutation p.D97N 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A551-01 4 26641802 26641802 T C TBC1D19 Missense_Mutation p.F158S 0.25 deleterious(0) probably_damaging(0.953) TCGA-EB-A551-01 4 38942624 38942624 C T FAM114A1 Silent p.I524I 0.17 TCGA-EB-A551-01 4 48496302 48496302 C T ZAR1 3'UTR 0.13 TCGA-EB-A551-01 4 5798815 5798815 C T EVC Silent p.L651L 0.11 TCGA-EB-A551-01 4 68810245 68810245 C T TMPRSS11A Missense_Mutation p.E82K 0.05 deleterious(0.05) benign(0.172) TCGA-EB-A551-01 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.11 tolerated(0.16) probably_damaging(0.975) TCGA-EB-A551-01 4 8401376 8401376 G A ACOX3 Silent p.F260F 0.25 TCGA-EB-A551-01 4 843544 843544 C T GAK Missense_Mutation p.E1285K 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 5 102343254 102343254 G A PAM Missense_Mutation p.R703Q 0.30 deleterious(0) probably_damaging(0.97) TCGA-EB-A551-01 5 114466380 114466380 C T TRIM36 Missense_Mutation p.E581K 0.31 deleterious(0.01) possibly_damaging(0.856) TCGA-EB-A551-01 5 118485498 118485498 C T DMXL1 Missense_Mutation p.H1326Y 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 5 1212501 1212501 G A SLC6A19 Missense_Mutation p.D189N 0.29 tolerated(0.12) benign(0.103) TCGA-EB-A551-01 5 127714545 127714545 C T FBN2 Missense_Mutation p.D548N 0.25 tolerated(0.08) probably_damaging(0.979) TCGA-EB-A551-01 5 132535009 132535009 C T FSTL4 Silent p.G769G 0.33 TCGA-EB-A551-01 5 137226229 137226229 G A PKD2L2 Missense_Mutation p.E31K 0.18 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 5 13780949 13780949 G A DNAH5 Silent p.I2980I 0.29 TCGA-EB-A551-01 5 140248790 140248790 C T PCDHA11 Silent p.S34S 0.33 TCGA-EB-A551-01 5 140431911 140431911 G A PCDHB1 Missense_Mutation p.E286K 0.38 tolerated(0.09) possibly_damaging(0.473) TCGA-EB-A551-01 5 140482381 140482381 G A PCDHB3 Silent p.R716R 0.19 TCGA-EB-A551-01 5 140515736 140515736 C T PCDHB5 Silent p.P240P 0.15 TCGA-EB-A551-01 5 140558990 140558990 C T PCDHB8 Silent p.L459L 0.09 TCGA-EB-A551-01 5 140604337 140604337 G A PCDHB14 Silent p.T420T 0.22 TCGA-EB-A551-01 5 140755365 140755365 C T PCDHGA6 Missense_Mutation p.S572F 0.23 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EB-A551-01 5 145895479 145895479 C T GPR151 Nonsense_Mutation p.W66* 0.18 TCGA-EB-A551-01 5 145895480 145895480 C T GPR151 Nonsense_Mutation p.W66* 0.18 TCGA-EB-A551-01 5 147486667 147486667 C T SPINK5 Missense_Mutation p.P516L 0.33 deleterious(0.04) probably_damaging(1) TCGA-EB-A551-01 5 147790301 147790301 G A FBXO38 Missense_Mutation p.G356R 0.17 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 5 149264387 149264387 C T PDE6A Missense_Mutation p.E628K 0.26 deleterious(0) probably_damaging(0.992) TCGA-EB-A551-01 5 149583514 149583514 C T SLC6A7 Silent p.F415F 0.27 TCGA-EB-A551-01 5 149583515 149583515 C T SLC6A7 Missense_Mutation p.P416S 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-EB-A551-01 5 161324247 161324247 C T GABRA1 Missense_Mutation p.P397L 0.23 tolerated(0.43) probably_damaging(0.999) TCGA-EB-A551-01 5 16177951 16177951 G A MARCH11 Missense_Mutation p.R193W 0.30 deleterious(0) probably_damaging(0.995) TCGA-EB-A551-01 5 167631565 167631565 G A TENM2 Missense_Mutation p.D1255N 0.21 deleterious(0) probably_damaging(0.971) TCGA-EB-A551-01 5 168127630 168127630 C T SLIT3 Missense_Mutation p.G967R 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 5 178358539 178358539 C T ZFP2 Silent p.N75N 0.28 TCGA-EB-A551-01 5 178392798 178392798 G A ZNF454 Missense_Mutation p.E465K 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A551-01 5 21755706 21755706 G A CDH12 Missense_Mutation p.L627F 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-EB-A551-01 5 35876643 35876643 G A IL7R 3'UTR 0.13 TCGA-EB-A551-01 5 35968221 35968221 C T UGT3A1 Missense_Mutation p.E71K 0.31 tolerated(0.57) benign(0.074) TCGA-EB-A551-01 5 37309274 37309274 G A NUP155 Silent p.S908S 0.17 TCGA-EB-A551-01 5 37309276 37309276 T A NUP155 Missense_Mutation p.S908C 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A551-01 5 39134399 39134399 C T FYB Silent p.L586L 0.16 TCGA-EB-A551-01 5 39153643 39153643 G A FYB Missense_Mutation p.P410L 0.20 tolerated(0.19) benign(0.022) TCGA-EB-A551-01 5 40945466 40945466 G A C7 Missense_Mutation p.G245E 0.32 tolerated(0.75) benign(0.001) TCGA-EB-A551-01 5 41000433 41000433 C T MROH2B Missense_Mutation p.M1457I 0.20 tolerated(0.51) benign(0) TCGA-EB-A551-01 5 5232557 5232557 C A ADAMTS16 Missense_Mutation p.S593Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-EB-A551-01 5 68513586 68513586 C T MRPS36 5'Flank 0.17 TCGA-EB-A551-01 5 75893395 75893395 G A IQGAP2 Missense_Mutation p.E347K 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A551-01 5 82815632 82815632 G A VCAN Missense_Mutation p.E503K 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-EB-A551-01 5 82835764 82835764 C T VCAN Silent p.L2314L 0.38 TCGA-EB-A551-01 5 876253 876253 C G BRD9 Missense_Mutation p.G449A 0.24 tolerated(0.26) benign(0.1) TCGA-EB-A551-01 6 100382286 100382286 T C MCHR2 Missense_Mutation p.K232R 0.21 tolerated(0.14) possibly_damaging(0.793) TCGA-EB-A551-01 6 110759929 110759929 G A SLC22A16 Silent p.I435I 0.13 TCGA-EB-A551-01 6 117114271 117114271 G A GPRC6A Silent p.I605I 0.14 TCGA-EB-A551-01 6 133013495 133013495 C T VNN1 Missense_Mutation p.G352E 0.29 deleterious(0.02) possibly_damaging(0.721) TCGA-EB-A551-01 6 25670232 25670232 C T SCGN Silent p.F133F 0.17 TCGA-EB-A551-01 6 26271337 26271337 G A HIST1H3G Silent p.A92A 0.19 TCGA-EB-A551-01 6 2680505 2680505 C T MYLK4 Silent p.V236V 0.17 TCGA-EB-A551-01 6 28270008 28270008 C T PGBD1 Missense_Mutation p.R793W 0.27 tolerated(0.1) benign(0) TCGA-EB-A551-01 6 42196293 42196293 C T TRERF1 Silent p.T1131T 0.24 TCGA-EB-A551-01 6 43643271 43643271 G A MRPS18A Silent p.H112H 0.21 TCGA-EB-A551-01 6 46661625 46661625 G A TDRD6 Missense_Mutation p.M1920I 0.28 tolerated(1) benign(0) TCGA-EB-A551-01 6 72006064 72006064 G A OGFRL1 Missense_Mutation p.E149K 0.14 tolerated(0.11) probably_damaging(0.95) TCGA-EB-A551-01 6 74533264 74533264 T G CD109 Silent p.P1415P 0.20 TCGA-EB-A551-01 7 121624065 121624065 T G PTPRZ1 Nonsense_Mutation p.Y274* 0.25 TCGA-EB-A551-01 7 142423688 142423688 C T TRBV27 Silent p.%3D 0.24 TCGA-EB-A551-01 7 142626658 142626658 G A TRPV5 Nonsense_Mutation p.Q118* 0.19 TCGA-EB-A551-01 7 142658103 142658103 G A KEL Silent p.F104F 0.22 TCGA-EB-A551-01 7 142836649 142836649 G A PIP Missense_Mutation p.E119K 0.19 tolerated(0.13) probably_damaging(0.99) TCGA-EB-A551-01 7 143956090 143956090 G A OR2A7 Missense_Mutation p.S211F 0.11 tolerated(0.11) benign(0.12) TCGA-EB-A551-01 7 144059788 144059788 G A ARHGEF5 Missense_Mutation p.G9E 0.14 tolerated(0.13) benign(0.024) TCGA-EB-A551-01 7 147600773 147600773 C T CNTNAP2 Missense_Mutation p.P739S 0.31 tolerated(0.87) benign(0.002) TCGA-EB-A551-01 7 148106514 148106514 A C CNTNAP2 Missense_Mutation p.Q1249H 0.19 deleterious(0) benign(0.243) TCGA-EB-A551-01 7 149474077 149474077 C T ZNF467 5'Flank 0.32 TCGA-EB-A551-01 7 150163924 150163924 C T GIMAP8 Silent p.I46I 0.20 TCGA-EB-A551-01 7 150389482 150389482 T G GIMAP2 Missense_Mutation p.S36R 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 7 151970842 151970842 G A KMT2C Silent p.F320F 0.04 TCGA-EB-A551-01 7 157049721 157049721 C T UBE3C Missense_Mutation p.P1022S 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A551-01 7 24849437 24849437 A G OSBPL3 Missense_Mutation p.V769A 0.22 deleterious(0.01) benign(0.202) TCGA-EB-A551-01 7 2976817 2976817 C T CARD11 Missense_Mutation p.E399K 0.07 tolerated(0.06) possibly_damaging(0.608) TCGA-EB-A551-01 7 44556885 44556885 G A NPC1L1 Nonsense_Mutation p.R1097* 0.21 TCGA-EB-A551-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.17 TCGA-EB-A551-01 7 73249126 73249126 G A WBSCR27 Missense_Mutation p.P229S 0.18 tolerated_low_confidence(0.16) benign(0.036) TCGA-EB-A551-01 7 93098082 93098082 G A CALCR Missense_Mutation p.H174Y 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-EB-A551-01 7 99473805 99473805 C T OR2AE1 Silent p.L284L 0.23 TCGA-EB-A551-01 7 99697648 99697648 C T MCM7 Missense_Mutation p.G34R 0.19 tolerated(0.5) benign(0.005) TCGA-EB-A551-01 7 99697662 99697662 T G MCM7 Missense_Mutation p.K29T 0.19 tolerated(0.17) benign(0.275) TCGA-EB-A551-01 8 103663588 103663588 G A KLF10 Silent p.P324P 0.16 TCGA-EB-A551-01 8 104427535 104427535 T C DCAF13 Missense_Mutation p.V106A 0.14 tolerated_low_confidence(0.4) benign(0) TCGA-EB-A551-01 8 113240985 113240985 C T CSMD3 Missense_Mutation p.R3655K 0.20 deleterious(0) benign(0.387) TCGA-EB-A551-01 8 125987928 125987928 A T ZNF572 Missense_Mutation p.M16L 0.13 tolerated(1) benign(0) TCGA-EB-A551-01 8 126091083 126091083 C T KIAA0196 Missense_Mutation p.R203K 0.08 tolerated(0.44) benign(0.37) TCGA-EB-A551-01 8 130777983 130777983 T C GSDMC Missense_Mutation p.N154S 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A551-01 8 139732998 139732998 C T COL22A1 Missense_Mutation p.G780E 0.14 probably_damaging(1) TCGA-EB-A551-01 8 142444979 142444979 G A PTP4A3 3'Flank 0.20 TCGA-EB-A551-01 8 143747187 143747187 G A JRK RNA 0.65 TCGA-EB-A551-01 8 145947432 145947432 G A ZNF251 Missense_Mutation p.P538L 0.06 deleterious(0.01) possibly_damaging(0.713) TCGA-EB-A551-01 8 145947433 145947433 G A ZNF251 Missense_Mutation p.P538S 0.05 tolerated(0.08) possibly_damaging(0.641) TCGA-EB-A551-01 8 17927343 17927343 G A ASAH1 Silent p.F103F 0.28 TCGA-EB-A551-01 8 2092727 2092727 G A MYOM2 Missense_Mutation p.G1407D 0.12 tolerated(0.08) benign(0.193) TCGA-EB-A551-01 8 35541246 35541246 G A UNC5D Splice_Site p.X251_splice 0.29 TCGA-EB-A551-01 8 35583740 35583740 C T UNC5D Silent p.I458I 0.21 TCGA-EB-A551-01 8 38271542 38271542 C T FGFR1 Splice_Site p.X760_splice 0.14 TCGA-EB-A551-01 8 48878827 48878827 C T MCM4 Nonsense_Mutation p.Q305* 0.23 TCGA-EB-A551-01 8 61713053 61713053 C T CHD7 Missense_Mutation p.S782F 0.16 probably_damaging(0.982) TCGA-EB-A551-01 8 63659542 63659542 G A NKAIN3 Missense_Mutation p.E109K 0.10 tolerated(0.05) probably_damaging(0.999) TCGA-EB-A551-01 8 65494154 65494154 C T BHLHE22 Silent p.I269I 0.20 TCGA-EB-A551-01 8 77616640 77616640 C T ZFHX4 Missense_Mutation p.P106L 0.13 possibly_damaging(0.851) TCGA-EB-A551-01 9 104170952 104170952 C T ZNF189 Missense_Mutation p.S301L 0.31 deleterious(0.01) possibly_damaging(0.723) TCGA-EB-A551-01 9 110084296 110084296 G A RAD23B Silent p.V238V 0.32 TCGA-EB-A551-01 9 110084297 110084297 G A RAD23B Missense_Mutation p.V239I 0.32 tolerated(0.19) benign(0.306) TCGA-EB-A551-01 9 114124235 114124235 A G KIAA0368 3'UTR 0.27 TCGA-EB-A551-01 9 117826075 117826075 C T TNC Missense_Mutation p.E1254K 0.29 tolerated(0.13) benign(0.012) TCGA-EB-A551-01 9 130541006 130541006 C T SH2D3C 5'UTR 0.12 TCGA-EB-A551-01 9 130658597 130658597 G A ST6GALNAC6 Missense_Mutation p.S14F 0.26 benign(0.305) TCGA-EB-A551-01 9 137990286 137990286 A T OLFM1 Missense_Mutation p.Y186F 0.26 tolerated(0.2) possibly_damaging(0.636) TCGA-EB-A551-01 9 137990287 137990287 C T OLFM1 Silent p.Y186Y 0.25 TCGA-EB-A551-01 9 139911437 139911437 G A ABCA2 Missense_Mutation p.T898I 0.23 tolerated(0.73) benign(0.06) TCGA-EB-A551-01 9 20926337 20926337 C T FOCAD Missense_Mutation p.S1000F 0.31 tolerated(0.12) benign(0.003) TCGA-EB-A551-01 9 35042882 35042882 G A C9orf131 Missense_Mutation p.A86T 0.24 tolerated(0.07) benign(0.221) TCGA-EB-A551-01 9 35802590 35802590 C T NPR2 Missense_Mutation p.R601C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A551-01 9 36118893 36118893 C T RECK Missense_Mutation p.S798F 0.27 tolerated(0.71) benign(0.086) TCGA-EB-A551-01 9 3829379 3829379 G A GLIS3 Missense_Mutation p.P863S 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A551-01 9 5044429 5044429 G A JAK2 Missense_Mutation p.S126N 0.39 tolerated(0.73) benign(0) TCGA-EB-A551-01 9 916806 916806 G A DMRT1 Missense_Mutation p.R289K 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A551-01 X 103359063 103359063 G A ZCCHC18 Missense_Mutation p.M87I 0.32 tolerated(0.1) benign(0.009) TCGA-EB-A551-01 X 105178250 105178250 G A NRK Missense_Mutation p.E1106K 0.25 tolerated(0.05) benign(0.167) TCGA-EB-A551-01 X 110491869 110491869 G A CAPN6 Missense_Mutation p.P471L 0.23 deleterious(0) probably_damaging(0.975) TCGA-EB-A551-01 X 111078253 111078253 C T TRPC5 Missense_Mutation p.E598K 0.24 tolerated(0.1) benign(0.396) TCGA-EB-A551-01 X 12708430 12708430 G A FRMPD4 Silent p.Q266Q 0.19 TCGA-EB-A551-01 X 12708431 12708431 G A FRMPD4 Missense_Mutation p.E267K 0.19 deleterious(0.01) possibly_damaging(0.76) TCGA-EB-A551-01 X 140995563 140995563 C T MAGEC1 Silent p.L791L 0.21 TCGA-EB-A551-01 X 14861685 14861685 A T FANCB 3'UTR 0.14 TCGA-EB-A551-01 X 1505432 1505432 G A SLC25A6 3'UTR 0.19 TCGA-EB-A551-01 X 1505433 1505433 G A SLC25A6 3'UTR 0.19 TCGA-EB-A551-01 X 17710574 17710574 C T NHS Missense_Mutation p.R280C 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A551-01 X 29973323 29973323 G A IL1RAPL1 Missense_Mutation p.E493K 0.22 tolerated(0.36) probably_damaging(0.997) TCGA-EB-A551-01 X 30326527 30326527 C T NR0B1 Silent p.Q318Q 0.19 TCGA-EB-A551-01 X 41524629 41524629 C T CASK Nonsense_Mutation p.W203* 0.21 TCGA-EB-A551-01 X 48895921 48895921 G A TFE3 Missense_Mutation p.A194V 0.14 deleterious(0.01) possibly_damaging(0.499) TCGA-EB-A551-01 X 49063549 49063549 G A CACNA1F Silent p.F1727F 0.21 TCGA-EB-A551-01 X 49689804 49689804 G A CLCN5 5'UTR 0.24 TCGA-EB-A551-01 X 50377160 50377160 G C SHROOM4 Missense_Mutation p.S638C 0.21 deleterious(0.05) benign(0.004) TCGA-EB-A551-01 X 53228021 53228021 C T KDM5C Missense_Mutation p.V765I 0.22 tolerated(0.31) benign(0.005) TCGA-EB-A551-01 X 65392408 65392408 C T HEPH Missense_Mutation p.P181S 0.15 tolerated(0.06) probably_damaging(0.994) TCGA-EB-A551-01 X 69649816 69649816 G A GDPD2 Missense_Mutation p.G404R 0.19 tolerated(0.39) benign(0.018) TCGA-EB-A551-01 X 70823914 70823914 G A ACRC Missense_Mutation p.E263K 0.15 unknown(0) TCGA-EB-A551-01 X 73061268 73061268 A G XIST RNA 0.16 TCGA-EB-A551-01 X 75650632 75650632 G A MAGEE1 Missense_Mutation p.G770E 0.20 tolerated(0.57) probably_damaging(1) TCGA-EB-A551-01 X 84510501 84510501 G A ZNF711 Missense_Mutation p.E106K 0.21 tolerated_low_confidence(0.59) probably_damaging(0.955) TCGA-EB-A553-01 10 105147410 105147410 G A TAF5 Missense_Mutation p.V714I 0.54 tolerated(1) benign(0.107) TCGA-EB-A553-01 10 115335708 115335708 G A HABP2 Silent p.G92G 0.28 TCGA-EB-A553-01 10 16962020 16962020 G A CUBN Missense_Mutation p.P2255S 0.79 tolerated(0.38) benign(0.014) TCGA-EB-A553-01 10 31816237 31816237 C T ZEB1 3'UTR 0.70 TCGA-EB-A553-01 10 50708721 50708721 C A ERCC6 Missense_Mutation p.R516S 0.24 deleterious(0.03) benign(0.292) TCGA-EB-A553-01 10 5415704 5415704 C T UCN3 Silent p.F7F 0.73 TCGA-EB-A553-01 10 61846476 61846484 CCTTTGTAT - ANK3 In_Frame_Del p.Y1234_G1236del 0.32 TCGA-EB-A553-01 10 75095266 75095266 T G TTC18 Missense_Mutation p.N270T 0.46 tolerated(0.71) benign(0.085) TCGA-EB-A553-01 10 79767502 79767502 C G POLR3A Missense_Mutation p.D678H 0.25 tolerated(0.1) possibly_damaging(0.537) TCGA-EB-A553-01 10 94834291 94834291 T C CYP26A1 Splice_Site p.X138_splice 0.30 TCGA-EB-A553-01 10 99968068 99968068 C A R3HCC1L Missense_Mutation p.P66Q 0.25 tolerated(0.06) benign(0.245) TCGA-EB-A553-01 11 1011141 1011141 C T AP2A2 3'UTR 0.31 TCGA-EB-A553-01 11 101953919 101953919 G C C11orf70 Missense_Mutation p.D265H 0.27 deleterious(0.04) benign(0.001) TCGA-EB-A553-01 11 102650393 102650393 G A MMP10 Silent p.I63I 0.36 TCGA-EB-A553-01 11 118375064 118375064 C T KMT2A Silent p.S2819S 0.26 TCGA-EB-A553-01 11 118772216 118772216 G A BCL9L Missense_Mutation p.R746W 0.29 probably_damaging(0.991) TCGA-EB-A553-01 11 118772217 118772217 G A BCL9L Silent p.G745G 0.27 TCGA-EB-A553-01 11 119549160 119549160 C T PVRL1 Missense_Mutation p.G132D 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 11 121000450 121000450 C T TECTA Missense_Mutation p.T824I 0.25 tolerated(0.2) benign(0.063) TCGA-EB-A553-01 11 121444982 121444982 C T SORL1 Missense_Mutation p.R1124C 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A553-01 11 121485604 121485604 C T SORL1 Missense_Mutation p.S1815F 0.26 deleterious(0.05) benign(0.011) TCGA-EB-A553-01 11 1263073 1263073 G A MUC5B Missense_Mutation p.E1655K 0.21 unknown(0) TCGA-EB-A553-01 11 18723576 18723576 C G TMEM86A 3'UTR 0.19 TCGA-EB-A553-01 11 18738549 18738549 T C IGSF22 Splice_Site p.X325_splice 0.30 TCGA-EB-A553-01 11 26584708 26584708 C T MUC15 Missense_Mutation p.D294N 0.27 tolerated(0.1) possibly_damaging(0.908) TCGA-EB-A553-01 11 27141292 27141292 C T BBOX1 Missense_Mutation p.P246S 0.36 deleterious(0.02) benign(0.127) TCGA-EB-A553-01 11 4615507 4615507 C T OR52I1 Missense_Mutation p.S80F 0.25 deleterious(0) possibly_damaging(0.883) TCGA-EB-A553-01 11 48146655 48146655 C T PTPRJ Missense_Mutation p.P337L 0.25 deleterious(0.03) benign(0.048) TCGA-EB-A553-01 11 55322290 55322290 G A OR4C15 Missense_Mutation p.A170T 0.29 tolerated_low_confidence(0.09) benign(0.039) TCGA-EB-A553-01 11 55872999 55872999 G A OR8H2 Missense_Mutation p.V161I 0.23 tolerated(0.52) benign(0.002) TCGA-EB-A553-01 11 57564120 57564120 G A CTNND1 Silent p.R204R 0.31 TCGA-EB-A553-01 11 6292675 6292675 C T CCKBR Missense_Mutation p.R416C 0.30 tolerated(0.08) possibly_damaging(0.556) TCGA-EB-A553-01 11 6411788 6411788 G A SMPD1 5'UTR 0.31 TCGA-EB-A553-01 11 64658877 64658877 C T ATG2A 3'Flank 0.35 TCGA-EB-A553-01 11 64695896 64695896 C T PPP2R5B Missense_Mutation p.R241W 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-EB-A553-01 11 65108530 65108530 C T DPF2 Missense_Mutation p.P96L 0.23 tolerated(0.7) benign(0.008) TCGA-EB-A553-01 11 82924107 82924107 T A ANKRD42 Intron 0.40 TCGA-EB-A553-01 11 836823 836823 G A CD151 Missense_Mutation p.A111T 0.33 deleterious(0) probably_damaging(0.958) TCGA-EB-A553-01 11 89413823 89413823 G A FOLH1B RNA 0.21 TCGA-EB-A553-01 12 100813813 100813813 G A SLC17A8 Missense_Mutation p.G549E 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 12 101018530 101018530 C T GAS2L3 Silent p.G649G 0.19 TCGA-EB-A553-01 12 106500199 106500199 G A NUAK1 Silent p.I115I 0.18 TCGA-EB-A553-01 12 10766047 10766047 G A MAGOHB Missense_Mutation p.R29W 0.23 deleterious(0) possibly_damaging(0.641) TCGA-EB-A553-01 12 113629450 113629450 C G RITA1 Missense_Mutation p.P213R 0.24 deleterious(0.02) probably_damaging(0.948) TCGA-EB-A553-01 12 120597670 120597670 G A GCN1L1 Missense_Mutation p.S903F 0.24 possibly_damaging(0.656) TCGA-EB-A553-01 12 122399997 122399997 G A WDR66 Silent p.R807R 0.19 TCGA-EB-A553-01 12 125900207 125900207 C T TMEM132B Missense_Mutation p.P359S 0.07 tolerated(0.41) benign(0.086) TCGA-EB-A553-01 12 130847658 130847658 G A PIWIL1 Missense_Mutation p.D722N 0.17 tolerated(0.08) benign(0.063) TCGA-EB-A553-01 12 131466576 131466576 C T GPR133 Missense_Mutation p.S153F 0.16 tolerated(0.2) benign(0.033) TCGA-EB-A553-01 12 132490671 132490671 C T EP400 Missense_Mutation p.P984S 0.10 unknown(0) TCGA-EB-A553-01 12 132551986 132551986 C T EP400 Silent p.A2943A 0.22 TCGA-EB-A553-01 12 19410385 19410385 A G PLEKHA5 Missense_Mutation p.K151E 0.37 deleterious(0) probably_damaging(0.989) TCGA-EB-A553-01 12 46246591 46246591 C T ARID2 Missense_Mutation p.P1562L 0.14 deleterious(0.01) benign(0.415) TCGA-EB-A553-01 12 49164710 49164710 G A ADCY6 Missense_Mutation p.T1032M 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 12 52307352 52307352 C T ACVRL1 Missense_Mutation p.P108L 0.55 tolerated(0.6) benign(0) TCGA-EB-A553-01 12 52818075 52818075 A T KRT75 3'UTR 0.31 TCGA-EB-A553-01 12 53232906 53232906 G A KRT78 Silent p.I518I 0.38 TCGA-EB-A553-01 12 54925303 54925303 T A NCKAP1L Missense_Mutation p.L878H 0.44 deleterious(0) probably_damaging(0.992) TCGA-EB-A553-01 12 55715094 55715094 C T OR6C1 Silent p.S237S 0.50 TCGA-EB-A553-01 12 57398251 57398251 C T ZBTB39 Missense_Mutation p.E151K 0.18 tolerated(0.63) benign(0.041) TCGA-EB-A553-01 12 64827280 64827280 T G XPOT Missense_Mutation p.N783K 0.19 tolerated(0.1) benign(0.04) TCGA-EB-A553-01 12 67698933 67698933 C T CAND1 Silent p.I495I 0.22 TCGA-EB-A553-01 12 69094622 69094622 T G NUP107 Silent p.A223A 0.20 TCGA-EB-A553-01 12 81239560 81239560 T C LIN7A Silent p.E144E 0.25 TCGA-EB-A553-01 13 25262510 25262510 C T ATP12A Silent p.S94S 0.47 TCGA-EB-A553-01 13 41943342 41943342 C T NAA16 Nonsense_Mutation p.Q624* 0.67 TCGA-EB-A553-01 13 42189112 42189112 C T VWA8 Missense_Mutation p.G1574R 0.59 deleterious(0) probably_damaging(0.997) TCGA-EB-A553-01 13 48919262 48919262 A - RB1 Frame_Shift_Del p.V144Lfs*9 0.28 TCGA-EB-A553-01 14 102900832 102900832 C T TECPR2 Silent p.L560L 0.41 TCGA-EB-A553-01 14 106877714 106877714 G A IGHV4-39 Nonsense_Mutation p.R94* 0.38 TCGA-EB-A553-01 14 19553461 19553461 G T POTEG Missense_Mutation p.K15N 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EB-A553-01 14 20215876 20215876 G A OR4Q3 Missense_Mutation p.G97E 0.20 deleterious(0.03) probably_damaging(0.957) TCGA-EB-A553-01 14 20482523 20482523 G A OR4K14 Missense_Mutation p.T277I 0.19 deleterious(0.02) benign(0.366) TCGA-EB-A553-01 14 22293950 22293950 G A TRAV10 Silent p.R18R 0.47 TCGA-EB-A553-01 14 23016520 23016520 C G TRAC Missense_Mutation p.F25L 0.23 tolerated(0.16) benign(0.044) TCGA-EB-A553-01 14 23392335 23392335 G A PRMT5 Silent p.S470S 0.20 TCGA-EB-A553-01 14 23897092 23897092 G A MYH7 Silent p.I530I 0.22 TCGA-EB-A553-01 14 28733889 28733889 G A BNIP3P1 RNA 0.38 TCGA-EB-A553-01 14 31382819 31382819 T C STRN3 Missense_Mutation p.M429V 0.19 tolerated(0.08) benign(0.022) TCGA-EB-A553-01 14 35872415 35872415 A C NFKBIA Missense_Mutation p.L163R 0.19 deleterious(0) probably_damaging(0.995) TCGA-EB-A553-01 14 39543653 39543653 G A SEC23A Missense_Mutation p.L357F 0.19 deleterious(0.01) possibly_damaging(0.54) TCGA-EB-A553-01 14 52505549 52505549 T G NID2 Missense_Mutation p.N725H 0.13 tolerated(0.09) benign(0.168) TCGA-EB-A553-01 14 65246616 65246616 C T SPTB Missense_Mutation p.E1434K 0.36 deleterious(0.04) possibly_damaging(0.895) TCGA-EB-A553-01 14 68260384 68260384 G A ZFYVE26 Missense_Mutation p.P832S 0.33 tolerated(0.11) benign(0.029) TCGA-EB-A553-01 14 73750930 73750930 G C NUMB Missense_Mutation p.Q270E 0.21 tolerated(0.12) benign(0.264) TCGA-EB-A553-01 14 92088198 92088198 A T CATSPERB Missense_Mutation p.L672I 0.44 tolerated(0.28) benign(0.05) TCGA-EB-A553-01 14 99723868 99723868 C T BCL11B Missense_Mutation p.E123K 0.15 deleterious(0.01) benign(0.097) TCGA-EB-A553-01 15 25475833 25475833 C T SNORD115-33 5'Flank 0.38 TCGA-EB-A553-01 15 30008956 30008956 T C TJP1 Missense_Mutation p.Y1354C 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EB-A553-01 15 45394012 45394012 C T DUOX2 Missense_Mutation p.G944S 0.39 tolerated(0.08) benign(0.424) TCGA-EB-A553-01 15 65490771 65490771 C T CILP Missense_Mutation p.G618E 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 15 68642977 68642977 C T ITGA11 Silent p.G346G 0.31 TCGA-EB-A553-01 15 70358493 70358493 G A TLE3 Missense_Mutation p.P146L 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A553-01 15 75248413 75248413 C T RPP25 Missense_Mutation p.R171K 0.26 tolerated(0.16) possibly_damaging(0.899) TCGA-EB-A553-01 15 77329519 77329519 G A PSTPIP1 3'UTR 0.26 TCGA-EB-A553-01 16 10567375 10567375 C T ATF7IP2 Missense_Mutation p.P489L 0.19 tolerated(0.25) benign(0.027) TCGA-EB-A553-01 16 28877922 28877922 C T SH2B1 Silent p.I169I 0.29 TCGA-EB-A553-01 16 3169515 3169515 A G ZNF205 Missense_Mutation p.E285G 0.30 tolerated(0.3) benign(0.003) TCGA-EB-A553-01 16 3306552 3306552 G T MEFV Silent p.T12T 0.58 TCGA-EB-A553-01 16 3406348 3406348 G A OR2C1 Missense_Mutation p.M136I 0.30 tolerated(0.06) benign(0.073) TCGA-EB-A553-01 16 66431926 66431926 G A CDH5 Missense_Mutation p.E468K 0.26 tolerated(0.81) benign(0.088) TCGA-EB-A553-01 16 66951562 66951562 G A CDH16 Missense_Mutation p.P38S 0.42 deleterious(0) probably_damaging(0.963) TCGA-EB-A553-01 16 70363264 70363264 C T DDX19B Missense_Mutation p.S226F 0.57 tolerated(0.86) benign(0.308) TCGA-EB-A553-01 16 70934991 70934991 G A HYDIN Silent p.T2988T 0.13 TCGA-EB-A553-01 16 74923643 74923643 G A WDR59 Missense_Mutation p.P718L 0.20 deleterious(0) possibly_damaging(0.797) TCGA-EB-A553-01 17 10247210 10247210 C T MYH13 Missense_Mutation p.D601N 0.51 deleterious(0) possibly_damaging(0.817) TCGA-EB-A553-01 17 10310251 10310251 G T MYH8 Missense_Mutation p.H671N 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-EB-A553-01 17 13399762 13399762 G A HS3ST3A1 Missense_Mutation p.R325C 0.16 deleterious(0) probably_damaging(0.931) TCGA-EB-A553-01 17 27904665 27904665 G A GIT1 Nonsense_Mutation p.Q336* 0.52 TCGA-EB-A553-01 17 33738920 33738920 G A SLFN12 Missense_Mutation p.P392S 0.25 deleterious(0.04) probably_damaging(0.946) TCGA-EB-A553-01 17 34072073 34072073 G A GAS2L2 Silent p.L815L 0.48 TCGA-EB-A553-01 17 37882009 37882009 G A ERBB2 Silent p.G925G 0.53 TCGA-EB-A553-01 17 39596836 39596836 T G KRT38 Missense_Mutation p.D113A 0.52 deleterious(0.01) probably_damaging(0.942) TCGA-EB-A553-01 17 39882119 39882119 G A HAP1 Silent p.S466S 0.22 TCGA-EB-A553-01 17 46862498 46862498 C T TTLL6 Silent p.R609R 0.25 TCGA-EB-A553-01 17 48614177 48614177 C T EPN3 Missense_Mutation p.T87M 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 17 48917423 48917423 C T WFIKKN2 Silent p.N258N 0.23 TCGA-EB-A553-01 17 71386497 71386497 C G SDK2 Missense_Mutation p.R1374P 0.24 deleterious(0) probably_damaging(0.976) TCGA-EB-A553-01 17 7674161 7674161 G A DNAH2 Silent p.K1424K 0.25 TCGA-EB-A553-01 17 79495838 79495838 C T FSCN2 Missense_Mutation p.P94L 0.62 tolerated(0.32) benign(0.393) TCGA-EB-A553-01 17 8192610 8192610 G A RANGRF Missense_Mutation p.A77T 0.55 deleterious(0.01) benign(0.024) TCGA-EB-A553-01 18 13387603 13387603 C T LDLRAD4 5'UTR 0.12 TCGA-EB-A553-01 18 28609492 28609492 G A DSC3 Missense_Mutation p.P153S 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 18 47364118 47364118 G A MYO5B Missense_Mutation p.T1636I 0.55 deleterious(0.02) benign(0.024) TCGA-EB-A553-01 18 7231671 7231671 C T LRRC30 Missense_Mutation p.P179S 0.63 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 19 11406870 11406870 G A TSPAN16 5'UTR 0.25 TCGA-EB-A553-01 19 12243515 12243515 G A ZNF20 Missense_Mutation p.H496Y 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 19 12825642 12825642 G A TNPO2 Silent p.L295L 0.10 TCGA-EB-A553-01 19 14000019 14000019 G A C19orf57 Silent p.F550F 0.21 TCGA-EB-A553-01 19 14001068 14001068 A G C19orf57 Silent p.L201L 0.27 TCGA-EB-A553-01 19 15073097 15073097 A G SLC1A6 Missense_Mutation p.S218P 0.19 tolerated(0.14) possibly_damaging(0.521) TCGA-EB-A553-01 19 15806988 15806988 G A CYP4F12 Missense_Mutation p.D423N 0.20 tolerated(0.19) benign(0.001) TCGA-EB-A553-01 19 16630476 16630476 C T CHERP Missense_Mutation p.R838K 0.19 tolerated(0.18) unknown(0) TCGA-EB-A553-01 19 19766002 19766002 G A ATP13A1 Silent p.V527V 0.19 TCGA-EB-A553-01 19 20295164 20295164 G A ZNF486 Splice_Site p.X11_splice 0.19 TCGA-EB-A553-01 19 2255220 2255220 C A JSRP1 Nonsense_Mutation p.E32* 0.12 TCGA-EB-A553-01 19 281378 281378 G A PPAP2C 3'Flank 0.28 TCGA-EB-A553-01 19 3542860 3542860 G A MFSD12 Silent p.P512P 0.09 TCGA-EB-A553-01 19 36236335 36236335 C T PSENEN 5'UTR 0.26 TCGA-EB-A553-01 19 36243806 36243806 C T LIN37 Intron 0.44 TCGA-EB-A553-01 19 38189673 38189673 T A ZNF607 Missense_Mutation p.E453D 0.52 tolerated(0.09) benign(0.075) TCGA-EB-A553-01 19 38655486 38655486 C T SIPA1L3 Missense_Mutation p.S1383F 0.52 deleterious(0.03) benign(0.24) TCGA-EB-A553-01 19 39212329 39212329 G A ACTN4 Splice_Site p.X481_splice 0.26 TCGA-EB-A553-01 19 39396029 39396029 C T NFKBIB Missense_Mutation p.P158L 0.28 tolerated_low_confidence(0.07) benign(0.002) TCGA-EB-A553-01 19 39819581 39819581 C T GMFG Intron 0.37 TCGA-EB-A553-01 19 40408594 40408594 G A FCGBP Silent p.F1415F 0.25 TCGA-EB-A553-01 19 40521751 40521751 C T ZNF546 3'UTR 0.36 TCGA-EB-A553-01 19 40901313 40901313 C T PRX Silent p.E982E 0.27 TCGA-EB-A553-01 19 42797210 42797210 C T CIC Missense_Mutation p.S1191F 0.52 probably_damaging(0.962) TCGA-EB-A553-01 19 42797211 42797211 C T CIC Silent p.S1191S 0.49 TCGA-EB-A553-01 19 4364187 4364187 C A SH3GL1 Missense_Mutation p.M121I 0.24 tolerated(0.07) possibly_damaging(0.593) TCGA-EB-A553-01 19 43922110 43922110 C A TEX101 Missense_Mutation p.P176T 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A553-01 19 4418031 4418031 C T CHAF1A Silent p.F325F 0.37 TCGA-EB-A553-01 19 45579557 45579557 C T ZNF296 Missense_Mutation p.M25I 0.20 tolerated_low_confidence(0.08) benign(0.058) TCGA-EB-A553-01 19 46190861 46190861 C A SNRPD2 Missense_Mutation p.G103W 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A553-01 19 47879795 47879795 C T DHX34 Silent p.A859A 0.50 TCGA-EB-A553-01 19 49245503 49245503 T G IZUMO1 Missense_Mutation p.Q188P 0.20 deleterious(0.03) benign(0.43) TCGA-EB-A553-01 19 49573937 49573937 G A KCNA7 Missense_Mutation p.P252S 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 19 49878176 49878176 G A DKKL1 Missense_Mutation p.G207E 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.713) TCGA-EB-A553-01 19 50119027 50119027 C T PRR12 Missense_Mutation p.P1683L 0.29 unknown(0) TCGA-EB-A553-01 19 50165248 50165248 C T IRF3 Silent p.K313K 0.23 TCGA-EB-A553-01 19 52090126 52090126 T G ZNF175 Missense_Mutation p.M181R 0.20 deleterious(0.01) benign(0.02) TCGA-EB-A553-01 19 52876394 52876394 G T ZNF880 Nonsense_Mutation p.E15* 0.15 TCGA-EB-A553-01 19 54723007 54723007 T A LILRB3 Missense_Mutation p.R473W 0.23 tolerated(0.19) possibly_damaging(0.78) TCGA-EB-A553-01 19 54848942 54848942 C T LILRA4 Silent p.L227L 0.30 TCGA-EB-A553-01 19 55143065 55143065 G A LILRB1 Missense_Mutation p.R62K 0.47 tolerated(1) benign(0.001) TCGA-EB-A553-01 19 55175844 55175844 T C LILRB4 Missense_Mutation p.V188A 0.19 tolerated(1) benign(0.001) TCGA-EB-A553-01 19 56531747 56531747 C T NLRP5 Missense_Mutation p.S210L 0.51 tolerated(0.2) benign(0.001) TCGA-EB-A553-01 19 56704063 56704063 C T ZSCAN5B Missense_Mutation p.R120Q 0.45 deleterious(0.04) benign(0.101) TCGA-EB-A553-01 19 57641084 57641084 G A USP29 Silent p.K347K 0.18 TCGA-EB-A553-01 19 58384854 58384854 C T ZNF814 Missense_Mutation p.G635E 0.05 tolerated(0.12) probably_damaging(0.999) TCGA-EB-A553-01 19 58549307 58549307 G A ZSCAN1 Missense_Mutation p.E35K 0.29 deleterious(0) probably_damaging(0.997) TCGA-EB-A553-01 19 7168070 7168070 T C INSR Missense_Mutation p.T507A 0.21 deleterious(0.01) benign(0.161) TCGA-EB-A553-01 19 7675465 7675465 C T CAMSAP3 Silent p.S315S 0.24 TCGA-EB-A553-01 19 7806367 7806367 A G CD209 3'UTR 0.21 TCGA-EB-A553-01 19 808727 808727 C T PTBP1 Silent p.F476F 0.20 TCGA-EB-A553-01 19 9048950 9048950 G A MUC16 Missense_Mutation p.P10894L 0.19 benign(0.001) TCGA-EB-A553-01 19 9061069 9061069 G A MUC16 Missense_Mutation p.H8793Y 0.48 unknown(0) TCGA-EB-A553-01 19 9071105 9071105 C T MUC16 Silent p.S5447S 0.18 TCGA-EB-A553-01 19 9090567 9090567 C T MUC16 Silent p.E416E 0.19 TCGA-EB-A553-01 1 103544382 103544382 G A COL11A1 Missense_Mutation p.P107L 0.36 probably_damaging(0.998) TCGA-EB-A553-01 1 109944642 109944642 T G PSMA5 Missense_Mutation p.D240A 0.22 tolerated(0.41) benign(0) TCGA-EB-A553-01 1 11008327 11008327 A C C1orf127 Missense_Mutation p.V622G 0.30 tolerated(0.12) benign(0.021) TCGA-EB-A553-01 1 112524968 112524968 G A KCND3 Silent p.I127I 0.36 TCGA-EB-A553-01 1 11907408 11907408 C T NPPA Missense_Mutation p.G71E 0.19 tolerated(0.07) benign(0.124) TCGA-EB-A553-01 1 1262281 1262281 C T GLTPD1 5'UTR 0.26 TCGA-EB-A553-01 1 13474959 13474959 G A PRAMEF18 Silent p.S390S 0.29 TCGA-EB-A553-01 1 147380991 147380991 G A GJA8 Silent p.K303K 0.43 TCGA-EB-A553-01 1 149908093 149908093 G A MTMR11 Silent p.P32P 0.66 TCGA-EB-A553-01 1 153276334 153276334 C A PGLYRP3 Missense_Mutation p.K176N 0.70 deleterious(0.04) probably_damaging(0.924) TCGA-EB-A553-01 1 153749147 153749147 C T SLC27A3 Missense_Mutation p.S321F 0.35 tolerated(0.1) probably_damaging(0.973) TCGA-EB-A553-01 1 153932521 153932521 G A SLC39A1 3'UTR 0.15 TCGA-EB-A553-01 1 155026807 155026807 C T ADAM15 Missense_Mutation p.T146I 0.15 deleterious(0.01) benign(0.351) TCGA-EB-A553-01 1 156640955 156640955 G A NES Missense_Mutation p.P1009S 0.17 tolerated(0.41) benign(0.02) TCGA-EB-A553-01 1 156777007 156777007 C T SH2D2A Missense_Mutation p.R388K 0.56 tolerated_low_confidence(0.19) benign(0.027) TCGA-EB-A553-01 1 156907218 156907218 C T ARHGEF11 Missense_Mutation p.M1421I 0.55 tolerated_low_confidence(0.22) benign(0) TCGA-EB-A553-01 1 159923405 159923405 C T SLAMF9 Missense_Mutation p.E29K 0.18 deleterious(0.02) possibly_damaging(0.511) TCGA-EB-A553-01 1 16091674 16091674 C T FBLIM1 Missense_Mutation p.P66S 0.22 tolerated(0.36) benign(0.022) TCGA-EB-A553-01 1 161144929 161144929 G A B4GALT3 Missense_Mutation p.R115C 0.53 deleterious(0.01) possibly_damaging(0.893) TCGA-EB-A553-01 1 169511239 169511239 C T F5 Missense_Mutation p.R1030Q 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 1 17046559 17046559 C T ESPNP RNA 0.10 TCGA-EB-A553-01 1 175087712 175087712 A C TNN Missense_Mutation p.Q801P 0.18 tolerated(0.07) benign(0.167) TCGA-EB-A553-01 1 178411872 178411872 C T RASAL2 Silent p.A330A 0.44 TCGA-EB-A553-01 1 179660033 179660033 G A TDRD5 Silent p.R1021R 0.20 TCGA-EB-A553-01 1 181767893 181767893 G A CACNA1E Missense_Mutation p.G2289R 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-EB-A553-01 1 184767251 184767251 T G FAM129A Missense_Mutation p.E543A 0.48 deleterious(0.01) possibly_damaging(0.493) TCGA-EB-A553-01 1 196311216 196311216 G A KCNT2 Missense_Mutation p.H516Y 0.11 deleterious(0.02) benign(0.026) TCGA-EB-A553-01 1 197446863 197446863 C T CRB1 Missense_Mutation p.L1359F 0.64 tolerated(0.1) possibly_damaging(0.538) TCGA-EB-A553-01 1 202984110 202984110 C T TMEM183A Missense_Mutation p.S154F 0.15 deleterious(0) probably_damaging(0.971) TCGA-EB-A553-01 1 205129291 205129291 G C DSTYK Missense_Mutation p.P686A 0.21 deleterious(0.01) benign(0.192) TCGA-EB-A553-01 1 205290681 205290681 C T NUAK2 Missense_Mutation p.G26R 0.17 tolerated_low_confidence(0.07) benign(0.079) TCGA-EB-A553-01 1 207076457 207076457 T C IL24 3'UTR 0.16 TCGA-EB-A553-01 1 226076544 226076544 C T LEFTY1 Missense_Mutation p.G75R 0.15 tolerated(0.57) probably_damaging(0.992) TCGA-EB-A553-01 1 228109473 228109473 G A WNT9A Missense_Mutation p.P282S 0.62 tolerated(0.19) benign(0.183) TCGA-EB-A553-01 1 228528463 228528463 C T OBSCN Silent p.C6814C 0.17 TCGA-EB-A553-01 1 230503753 230503753 C T PGBD5 Intron 0.15 TCGA-EB-A553-01 1 23520188 23520188 G A HTR1D Silent p.F175F 0.24 TCGA-EB-A553-01 1 235866078 235866078 G A LYST Missense_Mutation p.T3448I 0.66 deleterious(0.01) benign(0.329) TCGA-EB-A553-01 1 248551136 248551136 C T OR2T6 Missense_Mutation p.T76I 0.60 tolerated(0.15) probably_damaging(0.939) TCGA-EB-A553-01 1 32842193 32842193 G A BSDC1 Missense_Mutation p.P293S 0.23 tolerated(0.08) possibly_damaging(0.615) TCGA-EB-A553-01 1 36282581 36282581 C T AGO4 Missense_Mutation p.P40S 0.26 deleterious(0) possibly_damaging(0.795) TCGA-EB-A553-01 1 39879935 39879935 C T KIAA0754 Missense_Mutation p.S1197F 0.28 unknown(0) TCGA-EB-A553-01 1 40434031 40434031 G A MFSD2A Missense_Mutation p.D425N 0.30 tolerated(0.07) probably_damaging(0.995) TCGA-EB-A553-01 1 42647664 42647664 G A FOXJ3 Silent p.L559L 0.33 TCGA-EB-A553-01 1 42922612 42922612 C T PPCS Missense_Mutation p.P126S 0.23 tolerated(0.13) benign(0.178) TCGA-EB-A553-01 1 53755252 53755252 G A LRP8 Silent p.S118S 0.47 TCGA-EB-A553-01 1 55464724 55464724 T C BSND 5'UTR 0.44 TCGA-EB-A553-01 1 59041840 59041840 C T TACSTD2 3'UTR 0.27 TCGA-EB-A553-01 1 67633791 67633791 C T IL23R 5'UTR 0.27 TCGA-EB-A553-01 1 71318539 71318539 C T PTGER3 Missense_Mutation p.E370K 0.21 tolerated(0.32) benign(0) TCGA-EB-A553-01 1 74507120 74507120 C T LRRIQ3 Missense_Mutation p.E499K 0.28 tolerated(0.13) benign(0.012) TCGA-EB-A553-01 1 75038834 75038834 C A C1orf173 Missense_Mutation p.G854W 0.24 deleterious(0) possibly_damaging(0.498) TCGA-EB-A553-01 1 75681480 75681480 C T SLC44A5 Missense_Mutation p.E563K 0.20 deleterious(0) probably_damaging(0.938) TCGA-EB-A553-01 1 89587652 89587652 C T GBP2 5'UTR 0.27 TCGA-EB-A553-01 20 42213775 42213775 C T SGK2 3'UTR 0.81 TCGA-EB-A553-01 20 44685155 44685155 C T SLC12A5 Missense_Mutation p.P1044L 0.15 tolerated(0.25) benign(0.001) TCGA-EB-A553-01 20 49236621 49236621 G A FAM65C Silent p.S53S 0.11 TCGA-EB-A553-01 20 50048763 50048763 G A NFATC2 Silent p.L855L 0.27 TCGA-EB-A553-01 20 61952392 61952392 G C COL20A1 Missense_Mutation p.V1061L 0.75 tolerated(0.12) benign(0.001) TCGA-EB-A553-01 20 9498876 9498876 G A LAMP5 Splice_Site p.X222_splice 0.58 TCGA-EB-A553-01 20 9546683 9546683 C T PAK7 Missense_Mutation p.E447K 0.33 tolerated(0.2) probably_damaging(0.951) TCGA-EB-A553-01 20 9546684 9546684 C T PAK7 Silent p.R446R 0.32 TCGA-EB-A553-01 21 22804576 22804576 A C NCAM2 Missense_Mutation p.K543N 0.15 tolerated(0.15) probably_damaging(0.974) TCGA-EB-A553-01 21 31654675 31654675 A C KRTAP24-1 Missense_Mutation p.C192W 0.26 tolerated(0.12) benign(0) TCGA-EB-A553-01 21 43916349 43916349 A C RSPH1 5'UTR 0.18 TCGA-EB-A553-01 22 31531775 31531775 G A PLA2G3 Silent p.N488N 0.74 TCGA-EB-A553-01 22 50722577 50722577 G A PLXNB2 Silent p.I749I 0.61 TCGA-EB-A553-01 22 51237414 51237414 G A RPL23AP82 RNA 0.11 TCGA-EB-A553-01 2 109384360 109384360 G C RANBP2 Silent p.R2455R 0.14 TCGA-EB-A553-01 2 110372897 110372897 T A SOWAHC Missense_Mutation p.D277E 0.31 tolerated(0.13) benign(0.038) TCGA-EB-A553-01 2 113088848 113088848 C T ZC3H6 Missense_Mutation p.P785S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A553-01 2 116594303 116594303 A C DPP10 Silent p.I725I 0.21 TCGA-EB-A553-01 2 120718393 120718393 C T PTPN4 Missense_Mutation p.P715L 0.41 deleterious(0) possibly_damaging(0.592) TCGA-EB-A553-01 2 153405571 153405572 - T FMNL2 Frame_Shift_Ins p.R108Kfs*10 0.17 TCGA-EB-A553-01 2 155711759 155711759 A T KCNJ3 Silent p.G480G 0.21 TCGA-EB-A553-01 2 166896038 166896038 G A SCN1A Silent p.F828F 0.39 TCGA-EB-A553-01 2 167085475 167085475 A C SCN9A Missense_Mutation p.V1300G 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 2 171572790 171572790 C A SP5 Missense_Mutation p.P25T 0.13 deleterious(0.01) possibly_damaging(0.641) TCGA-EB-A553-01 2 175612819 175612819 C T CHRNA1 3'UTR 0.53 TCGA-EB-A553-01 2 179399356 179399356 T C TTN Missense_Mutation p.T33996A 0.21 TCGA-EB-A553-01 2 179434096 179434096 C T TTN Missense_Mutation p.G25588E 0.28 TCGA-EB-A553-01 2 179581978 179581978 C T TTN Missense_Mutation p.E8495K 0.41 TCGA-EB-A553-01 2 186672566 186672566 T A FSIP2 Missense_Mutation p.I6267K 0.23 possibly_damaging(0.816) TCGA-EB-A553-01 2 198950624 198950624 C T PLCL1 Missense_Mutation p.R795C 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 2 210557689 210557689 G A MAP2 Nonsense_Mutation p.W265* 0.22 TCGA-EB-A553-01 2 220366636 220366636 C T GMPPA Silent p.I102I 0.16 TCGA-EB-A553-01 2 230377642 230377642 G A DNER Missense_Mutation p.S335F 0.16 tolerated(1) benign(0.003) TCGA-EB-A553-01 2 233272081 233272081 G A ALPPL2 Missense_Mutation p.M90I 0.15 deleterious(0) benign(0.222) TCGA-EB-A553-01 2 233633146 233633146 C T KCNJ13 Missense_Mutation p.E280K 0.19 tolerated(0.13) probably_damaging(0.965) TCGA-EB-A553-01 2 240048223 240048223 G A HDAC4 Nonsense_Mutation p.Q483* 0.46 TCGA-EB-A553-01 2 24194228 24194228 G T UBXN2A Nonsense_Mutation p.E42* 0.29 TCGA-EB-A553-01 2 27325020 27325020 G A CGREF1 Missense_Mutation p.S96F 0.20 deleterious(0) probably_damaging(0.987) TCGA-EB-A553-01 2 29295565 29295565 C T C2orf71 Silent p.R521R 0.18 TCGA-EB-A553-01 2 31625971 31625971 C G XDH Missense_Mutation p.G47A 0.15 deleterious(0.02) possibly_damaging(0.651) TCGA-EB-A553-01 2 44999183 44999183 G A CAMKMT Silent p.K301K 0.14 TCGA-EB-A553-01 2 47703538 47703538 C T MSH2 Nonsense_Mutation p.R680* 0.26 TCGA-EB-A553-01 2 61468711 61468711 G A USP34 Missense_Mutation p.S2254L 0.60 deleterious(0) possibly_damaging(0.732) TCGA-EB-A553-01 2 75115083 75115083 T C HK2 Missense_Mutation p.L758P 0.19 deleterious(0) probably_damaging(0.986) TCGA-EB-A553-01 2 77745537 77745537 C T LRRTM4 Silent p.V486V 0.15 TCGA-EB-A553-01 2 97751483 97751483 G A FAHD2B Missense_Mutation p.T213I 0.38 deleterious(0) probably_damaging(0.962) TCGA-EB-A553-01 3 108072446 108072446 C T HHLA2 Silent p.D79D 0.15 TCGA-EB-A553-01 3 108100345 108100345 A G MYH15 3'UTR 0.26 TCGA-EB-A553-01 3 108282084 108282084 C T KIAA1524 Missense_Mutation p.R508H 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A553-01 3 111432904 111432904 G A PLCXD2 Silent p.A265A 0.46 TCGA-EB-A553-01 3 111685471 111685471 C T PHLDB2 Missense_Mutation p.S1030L 0.14 tolerated(0.15) benign(0.016) TCGA-EB-A553-01 3 111898453 111898453 T C SLC9C1 Silent p.G948G 0.12 TCGA-EB-A553-01 3 121207090 121207090 G A POLQ Missense_Mutation p.S1563F 0.21 deleterious(0) probably_damaging(0.936) TCGA-EB-A553-01 3 121980615 121980615 C A CASR Missense_Mutation p.Q245K 0.16 tolerated(0.69) possibly_damaging(0.764) TCGA-EB-A553-01 3 126261424 126261424 G A CHST13 3'UTR 0.30 TCGA-EB-A553-01 3 127429458 127429458 C T MGLL Silent p.G187G 0.33 TCGA-EB-A553-01 3 140277662 140277662 C T CLSTN2 Silent p.F668F 0.21 TCGA-EB-A553-01 3 14862499 14862499 G A FGD5 Missense_Mutation p.D641N 0.22 deleterious(0.02) benign(0.298) TCGA-EB-A553-01 3 149245639 149245639 C T WWTR1 Missense_Mutation p.D297N 0.14 deleterious(0) possibly_damaging(0.673) TCGA-EB-A553-01 3 164735407 164735407 G A SI Missense_Mutation p.R1230C 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A553-01 3 167512427 167512427 C G SERPINI1 Silent p.S232S 0.18 TCGA-EB-A553-01 3 184910508 184910508 G T EHHADH Missense_Mutation p.P560T 0.36 deleterious(0.05) probably_damaging(0.995) TCGA-EB-A553-01 3 185339635 185339635 T G SENP2 Missense_Mutation p.C490G 0.16 deleterious(0.04) probably_damaging(0.979) TCGA-EB-A553-01 3 195595288 195595288 C A TNK2 Silent p.L690L 0.24 TCGA-EB-A553-01 3 196675080 196675080 A C PIGZ Missense_Mutation p.F230V 0.12 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 3 197409405 197409405 G A KIAA0226 Missense_Mutation p.R688C 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 3 35748500 35748500 G A ARPP21 Missense_Mutation p.E241K 0.47 deleterious(0.03) benign(0.376) TCGA-EB-A553-01 3 36778846 36778846 C T DCLK3 Silent p.Q435Q 0.21 TCGA-EB-A553-01 3 38565421 38565421 C T EXOG Silent p.P225P 0.45 TCGA-EB-A553-01 3 48730417 48730417 C T IP6K2 Missense_Mutation p.R133H 0.23 tolerated(0.34) benign(0.135) TCGA-EB-A553-01 3 49152671 49152671 G A USP19 Missense_Mutation p.S669F 0.14 deleterious(0.01) probably_damaging(0.93) TCGA-EB-A553-01 3 50363547 50363547 C G TUSC2 3'UTR 0.44 TCGA-EB-A553-01 3 56026099 56026099 G A ERC2 Silent p.I747I 0.19 TCGA-EB-A553-01 3 74350637 74350637 C T CNTN3 Silent p.V669V 0.29 TCGA-EB-A553-01 3 89391084 89391084 C T EPHA3 Missense_Mutation p.P384S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A553-01 3 98188954 98188954 C T OR5K1 Silent p.Y178Y 0.39 TCGA-EB-A553-01 4 115769369 115769369 A C NDST4 Splice_Site p.X647_splice 0.15 TCGA-EB-A553-01 4 122728717 122728717 C T EXOSC9 Missense_Mutation p.P182L 0.46 deleterious(0) benign(0.281) TCGA-EB-A553-01 4 123868522 123868522 T C SPATA5 Silent p.D531D 0.25 TCGA-EB-A553-01 4 126238098 126238098 C T FAT4 Missense_Mutation p.R178C 0.19 possibly_damaging(0.631) TCGA-EB-A553-01 4 126238692 126238692 G A FAT4 Missense_Mutation p.V376M 0.21 probably_damaging(0.999) TCGA-EB-A553-01 4 164507014 164507014 G A MARCH1 Missense_Mutation p.R104C 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A553-01 4 169049306 169049306 C T ANXA10 Silent p.L30L 0.11 TCGA-EB-A553-01 4 177142371 177142371 C T ASB5 Missense_Mutation p.G202E 0.50 deleterious(0) probably_damaging(0.998) TCGA-EB-A553-01 4 56482528 56482528 G A NMU Silent p.L66L 0.16 TCGA-EB-A553-01 4 5990146 5990146 C T C4orf50 Silent p.E451E 0.53 TCGA-EB-A553-01 4 78087100 78087100 T C CCNG2 3'UTR 0.21 TCGA-EB-A553-01 4 80990644 80990644 G A ANTXR2 Missense_Mutation p.S81F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 5 121187822 121187822 C T FTMT Missense_Mutation p.S55F 0.56 tolerated(0.26) benign(0.365) TCGA-EB-A553-01 5 127782225 127782225 A C FBN2 Missense_Mutation p.C301G 0.29 deleterious(0) benign(0.001) TCGA-EB-A553-01 5 137235267 137235267 G C PKD2L2 Missense_Mutation p.R196P 0.29 deleterious(0.04) possibly_damaging(0.53) TCGA-EB-A553-01 5 13786455 13786455 T C DNAH5 Missense_Mutation p.T2885A 0.17 benign(0.217) TCGA-EB-A553-01 5 13807752 13807752 T G DNAH5 Missense_Mutation p.H2612P 0.21 possibly_damaging(0.537) TCGA-EB-A553-01 5 13817760 13817760 C T DNAH5 Silent p.A2295A 0.47 TCGA-EB-A553-01 5 138860786 138860786 G A TMEM173 Silent p.L123L 0.26 TCGA-EB-A553-01 5 138941371 138941371 C T UBE2D2 5'UTR 0.33 TCGA-EB-A553-01 5 140175678 140175678 C T PCDHA2 Missense_Mutation p.R377C 0.32 tolerated_low_confidence(0.05) benign(0.044) TCGA-EB-A553-01 5 140482547 140482547 C T PCDHB3 Missense_Mutation p.P772S 0.52 tolerated_low_confidence(0.09) benign(0.301) TCGA-EB-A553-01 5 140554032 140554032 C T PCDHB7 Missense_Mutation p.P539L 0.28 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EB-A553-01 5 140798510 140798510 C T PCDHGB7 Missense_Mutation p.P362S 0.54 tolerated(0.22) benign(0.07) TCGA-EB-A553-01 5 14508057 14508057 T G TRIO Silent p.A2940A 0.14 TCGA-EB-A553-01 5 150275188 150275188 C A ZNF300 Missense_Mutation p.G554V 0.33 tolerated(0.41) probably_damaging(0.933) TCGA-EB-A553-01 5 176831286 176831286 C T F12 Missense_Mutation p.R310K 0.26 tolerated(0.56) benign(0) TCGA-EB-A553-01 5 178139609 178139609 G A ZNF354A Nonsense_Mutation p.R424* 0.20 TCGA-EB-A553-01 5 1879778 1879778 C T IRX4 Nonsense_Mutation p.W192* 0.27 TCGA-EB-A553-01 5 19747328 19747328 G C CDH18 Missense_Mutation p.D82E 0.23 deleterious(0.02) probably_damaging(0.938) TCGA-EB-A553-01 5 23526679 23526679 G T PRDM9 Missense_Mutation p.M494I 0.29 tolerated(0.31) benign(0.004) TCGA-EB-A553-01 5 26988454 26988454 A C CDH9 5'UTR 0.25 TCGA-EB-A553-01 5 32090360 32090360 C T PDZD2 Missense_Mutation p.P2269L 0.36 tolerated(1) benign(0) TCGA-EB-A553-01 5 32090361 32090361 C T PDZD2 Silent p.P2269P 0.36 TCGA-EB-A553-01 5 34933922 34933922 A T DNAJC21 Nonsense_Mutation p.K34* 0.55 TCGA-EB-A553-01 5 35065441 35065441 G A PRLR Missense_Mutation p.P540L 0.25 tolerated(0.26) benign(0.012) TCGA-EB-A553-01 5 3600196 3600196 A C IRX1 Silent p.A378A 0.45 TCGA-EB-A553-01 5 38953653 38953653 A G RICTOR Silent p.N900N 0.21 TCGA-EB-A553-01 5 41160444 41160444 C T C6 Missense_Mutation p.R495K 0.39 tolerated(0.56) benign(0.023) TCGA-EB-A553-01 5 75427918 75427918 G A SV2C Missense_Mutation p.D115N 0.32 tolerated(0.12) benign(0.238) TCGA-EB-A553-01 5 76934393 76934393 G A OTP 5'UTR 0.62 TCGA-EB-A553-01 5 96011259 96011259 C A CAST Missense_Mutation p.T31N 0.24 tolerated_low_confidence(0.47) benign(0.004) TCGA-EB-A553-01 6 10874452 10874452 G A GCM2 Missense_Mutation p.P433S 0.24 tolerated_low_confidence(0.15) benign(0.154) TCGA-EB-A553-01 6 117996799 117996799 G T NUS1 5'UTR 0.29 TCGA-EB-A553-01 6 121482100 121482100 G T TBC1D32 Silent p.L891L 0.62 TCGA-EB-A553-01 6 121769004 121769004 C T GJA1 Silent p.F337F 0.22 TCGA-EB-A553-01 6 136590601 136590601 C T BCLAF1 Silent p.K731K 0.08 TCGA-EB-A553-01 6 139265137 139265137 G A REPS1 Nonsense_Mutation p.R257* 0.55 TCGA-EB-A553-01 6 150387045 150387045 G A ULBP3 Silent p.F114F 0.24 TCGA-EB-A553-01 6 157505553 157505553 C T ARID1B Silent p.L1178L 0.31 TCGA-EB-A553-01 6 157505554 157505554 C T ARID1B Nonsense_Mutation p.Q1179* 0.30 TCGA-EB-A553-01 6 159653438 159653438 C T FNDC1 Missense_Mutation p.R632C 0.47 deleterious_low_confidence(0) unknown(0) TCGA-EB-A553-01 6 27107294 27107294 C T HIST1H4I Silent p.D69D 0.31 TCGA-EB-A553-01 6 31079682 31079682 G A C6orf15 Missense_Mutation p.P152S 0.26 tolerated(0.08) probably_damaging(0.932) TCGA-EB-A553-01 6 31583327 31583327 C A AIF1 Missense_Mutation p.Q19K 0.27 tolerated(0.19) benign(0.06) TCGA-EB-A553-01 6 33147551 33147551 C T COL11A2 Missense_Mutation p.G378D 0.15 probably_damaging(0.969) TCGA-EB-A553-01 6 33147552 33147552 C G COL11A2 Missense_Mutation p.G378R 0.16 probably_damaging(0.979) TCGA-EB-A553-01 6 46851970 46851970 C T GPR116 Missense_Mutation p.E123K 0.23 deleterious(0.01) benign(0.334) TCGA-EB-A553-01 6 55300375 55300375 C T HMGCLL1 3'UTR 0.31 TCGA-EB-A553-01 6 56462777 56462777 T C DST Missense_Mutation p.S1363G 0.35 probably_damaging(0.96) TCGA-EB-A553-01 6 70071199 70071199 T G BAI3 Missense_Mutation p.V1345G 0.63 tolerated(0.4) benign(0.018) TCGA-EB-A553-01 6 7585319 7585319 T C DSP Silent p.S2608S 0.65 TCGA-EB-A553-01 6 7585866 7585866 C T DSP Missense_Mutation p.R2791C 0.38 probably_damaging(0.997) TCGA-EB-A553-01 6 80877487 80877487 G A BCKDHB Missense_Mutation p.E146K 0.58 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 6 97247435 97247435 G A GPR63 Missense_Mutation p.S58F 0.59 deleterious(0.05) benign(0.001) TCGA-EB-A553-01 7 127014801 127014801 C G ZNF800 Missense_Mutation p.E197Q 0.10 tolerated(0.52) benign(0.009) TCGA-EB-A553-01 7 128582271 128582271 C T IRF5 Missense_Mutation p.P46S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A553-01 7 138921784 138921784 G A UBN2 Missense_Mutation p.D168N 0.15 tolerated(0.08) benign(0.003) TCGA-EB-A553-01 7 139661859 139661859 C T TBXAS1 Missense_Mutation p.P368S 0.55 tolerated(0.4) benign(0.003) TCGA-EB-A553-01 7 140374045 140374045 C T ADCK2 Silent p.L305L 0.20 TCGA-EB-A553-01 7 140374050 140374050 C T ADCK2 Missense_Mutation p.S307F 0.19 deleterious(0.01) benign(0.022) TCGA-EB-A553-01 7 140374051 140374051 C T ADCK2 Silent p.S307S 0.20 TCGA-EB-A553-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-EB-A553-01 7 141427324 141427324 C T WEE2 Intron 0.14 TCGA-EB-A553-01 7 142574936 142574936 C A TRPV6 Missense_Mutation p.G149V 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 7 146471421 146471421 C T CNTNAP2 Silent p.S52S 0.47 TCGA-EB-A553-01 7 150027740 150027740 G A ZBED6CL Missense_Mutation p.G83R 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A553-01 7 150324797 150324797 C A GIMAP6 3'UTR 0.12 TCGA-EB-A553-01 7 150417988 150417988 C T GIMAP1 Missense_Mutation p.A299V 0.47 tolerated_low_confidence(0.2) benign(0.002) TCGA-EB-A553-01 7 151135048 151135048 G A CRYGN Intron 0.20 TCGA-EB-A553-01 7 26233279 26233279 C T HNRNPA2B1 Missense_Mutation p.G265R 0.36 tolerated(0.15) benign(0.041) TCGA-EB-A553-01 7 31121325 31121325 C T ADCYAP1R1 Intron 0.47 TCGA-EB-A553-01 7 35673969 35673969 C T HERPUD2 Missense_Mutation p.V338I 0.16 tolerated(0.52) benign(0.003) TCGA-EB-A553-01 7 47947802 47947802 C T PKD1L1 Missense_Mutation p.G425E 0.53 deleterious(0.03) benign(0.388) TCGA-EB-A553-01 7 62752259 62752259 G A ZNF733P RNA 0.35 TCGA-EB-A553-01 7 77762249 77762249 G A MAGI2 Missense_Mutation p.P1054S 0.18 tolerated(0.07) benign(0.023) TCGA-EB-A553-01 7 86794313 86794313 T G DMTF1 Missense_Mutation p.V19G 0.24 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-EB-A553-01 7 97823258 97823258 G C LMTK2 Missense_Mutation p.D1161H 0.17 tolerated(0.12) benign(0.021) TCGA-EB-A553-01 7 99381735 99381735 G T CYP3A4 5'UTR 0.40 TCGA-EB-A553-01 7 99690928 99690928 C T MCM7 Missense_Mutation p.G649R 0.14 tolerated(0.59) benign(0.002) TCGA-EB-A553-01 8 100493830 100493830 C T VPS13B Nonsense_Mutation p.Q1224* 0.48 TCGA-EB-A553-01 8 133673812 133673812 C T LRRC6 Silent p.E24E 0.18 TCGA-EB-A553-01 8 141310678 141310678 C T TRAPPC9 Missense_Mutation p.R651Q 0.22 tolerated(0.21) possibly_damaging(0.683) TCGA-EB-A553-01 8 144522426 144522426 G A ZC3H3 Missense_Mutation p.P867L 0.33 tolerated(0.22) benign(0.357) TCGA-EB-A553-01 8 144945812 144945812 G A EPPK1 Missense_Mutation p.S537F 0.14 possibly_damaging(0.836) TCGA-EB-A553-01 8 40011172 40011172 G A C8orf4 Missense_Mutation p.E41K 0.61 tolerated(0.13) probably_damaging(0.979) TCGA-EB-A553-01 8 67047244 67047244 C T TRIM55 Nonsense_Mutation p.Q121* 0.43 TCGA-EB-A553-01 8 69104733 69104733 T C PREX2 Missense_Mutation p.I1526T 0.16 deleterious(0) benign(0.024) TCGA-EB-A553-01 8 92982920 92982920 A T RUNX1T1 Missense_Mutation p.L513Q 0.61 deleterious(0.04) possibly_damaging(0.905) TCGA-EB-A553-01 9 107331787 107331787 G T OR13C8 Missense_Mutation p.M113I 0.21 tolerated(0.13) benign(0.001) TCGA-EB-A553-01 9 107367801 107367801 C T OR13C2 Silent p.V36V 0.28 TCGA-EB-A553-01 9 113265480 113265480 G A SVEP1 Missense_Mutation p.L441F 0.50 probably_damaging(1) TCGA-EB-A553-01 9 140110573 140110573 C T NDOR1 Missense_Mutation p.L537F 0.24 deleterious(0.01) possibly_damaging(0.807) TCGA-EB-A553-01 9 14307321 14307321 G A NFIB Missense_Mutation p.L77F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EB-A553-01 9 22006193 22006193 C T CDKN2B Silent p.A70A 0.22 TCGA-EB-A553-01 9 34512373 34512373 G C DNAI1 Silent p.V480V 0.24 TCGA-EB-A553-01 9 34649004 34649004 C T GALT Missense_Mutation p.S277F 0.41 tolerated(0.06) possibly_damaging(0.467) TCGA-EB-A553-01 9 34649005 34649005 C T GALT Silent p.S277S 0.42 TCGA-EB-A553-01 9 71549961 71549961 G A PIP5K1B Missense_Mutation p.A453T 0.22 tolerated(0.3) benign(0.003) TCGA-EB-A553-01 9 78796463 78796463 A C PCSK5 Missense_Mutation p.N718T 0.19 deleterious(0.03) benign(0.394) TCGA-EB-A553-01 9 96051635 96051635 G A WNK2 Silent p.S1570S 0.12 TCGA-EB-A553-01 9 96051636 96051636 G A WNK2 Missense_Mutation p.D1571N 0.12 unknown(0) TCGA-EB-A553-01 X 105855852 105855852 T A CXorf57 Nonsense_Mutation p.L181* 0.35 TCGA-EB-A553-01 X 107224452 107224452 G A TEX13B Missense_Mutation p.S266F 0.34 tolerated(0.56) benign(0.066) TCGA-EB-A553-01 X 123779112 123779112 C T TENM1 Missense_Mutation p.G586E 0.74 deleterious(0) probably_damaging(0.997) TCGA-EB-A553-01 X 135482222 135482222 T C GPR112 Missense_Mutation p.V2841A 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A553-01 X 152823641 152823641 C T ATP2B3 Silent p.I835I 0.75 TCGA-EB-A553-01 X 153225451 153225451 G T HCFC1 Missense_Mutation p.P416T 0.67 tolerated(0.08) probably_damaging(0.994) TCGA-EB-A553-01 X 25014063 25014063 C T POLA1 Missense_Mutation p.S1462F 0.75 deleterious_low_confidence(0) benign(0.259) TCGA-EB-A553-01 X 46434386 46434386 C T CHST7 Silent p.F340F 0.55 TCGA-EB-A553-01 X 48675031 48675031 C T HDAC6 Silent p.L594L 0.71 TCGA-EB-A553-01 X 54224806 54224806 G A WNK3 Missense_Mutation p.P1785L 0.42 deleterious_low_confidence(0) benign(0.025) TCGA-EB-A553-01 X 54959755 54959755 G A PFKFB1 3'UTR 0.86 TCGA-EB-A553-01 X 55052314 55052314 G A ALAS2 Silent p.I40I 0.28 TCGA-EB-A553-01 X 64139075 64139075 C T ZC4H2 Silent p.E136E 0.58 TCGA-EB-A553-01 X 71359783 71359783 G A NHSL2 Silent p.K795K 0.35 TCGA-EB-A553-01 X 71360307 71360307 G C NHSL2 Missense_Mutation p.S970T 0.20 tolerated(0.1) benign(0.005) TCGA-EB-A553-01 X 73062598 73062598 G A XIST RNA 0.68 TCGA-EB-A57M-01 11 102826367 102826367 G A MMP13 Missense_Mutation p.P23L 0.03 tolerated(0.1) benign(0.003) TCGA-EB-A57M-01 11 108196953 108196953 G C ATM Splice_Site p.X2325_splice 0.51 TCGA-EB-A57M-01 11 6592235 6592235 C T DNHD1 Missense_Mutation p.T4498M 0.10 benign(0.075) TCGA-EB-A57M-01 11 78372521 78372521 C T TENM4 Missense_Mutation p.M2508I 0.11 tolerated(0.52) benign(0.001) TCGA-EB-A57M-01 11 78380168 78380168 C A TENM4 Missense_Mutation p.D2408Y 0.18 deleterious(0) probably_damaging(0.954) TCGA-EB-A57M-01 11 78380288 78380288 C T TENM4 Missense_Mutation p.A2368T 0.12 deleterious(0) probably_damaging(0.994) TCGA-EB-A57M-01 11 78380919 78380919 C A TENM4 Missense_Mutation p.E2157D 0.16 deleterious(0) probably_damaging(0.913) TCGA-EB-A57M-01 11 78380925 78380925 C A TENM4 Missense_Mutation p.Q2155H 0.14 deleterious(0) probably_damaging(0.993) TCGA-EB-A57M-01 11 82989807 82989807 C G CCDC90B Missense_Mutation p.D96H 0.38 deleterious(0) probably_damaging(0.991) TCGA-EB-A57M-01 11 82991211 82991211 C T CCDC90B Missense_Mutation p.A65T 0.35 tolerated(0.07) possibly_damaging(0.838) TCGA-EB-A57M-01 11 82991220 82991220 C G CCDC90B Missense_Mutation p.D62H 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A57M-01 11 82991241 82991241 C T CCDC90B Missense_Mutation p.E55K 0.34 tolerated(0.32) possibly_damaging(0.507) TCGA-EB-A57M-01 13 28127364 28127364 T C LNX2 Missense_Mutation p.M587V 0.26 tolerated(0.1) benign(0.206) TCGA-EB-A57M-01 13 39265493 39265493 T G FREM2 Missense_Mutation p.S1338A 0.44 tolerated(0.12) benign(0.001) TCGA-EB-A57M-01 16 3349757 3349757 G A TIGD7 Silent p.D286D 0.30 TCGA-EB-A57M-01 16 71675021 71675021 A C MARVELD3 3'UTR 0.67 TCGA-EB-A57M-01 16 825590 825590 A T MSLNL Missense_Mutation p.W391R 0.18 benign(0.013) TCGA-EB-A57M-01 17 30693707 30693710 AAGT - ZNF207 Frame_Shift_Del p.S285Qfs*38 0.13 TCGA-EB-A57M-01 17 40321635 40321635 G A KCNH4 Missense_Mutation p.R484C 0.09 deleterious(0) possibly_damaging(0.772) TCGA-EB-A57M-01 17 76212766 76212766 G C AC087645.1 Missense_Mutation p.D277E 0.14 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-EB-A57M-01 19 18329228 18329228 G A PDE4C Silent p.H382H 0.06 TCGA-EB-A57M-01 19 35719087 35719087 C T FAM187B Missense_Mutation p.R166H 0.06 deleterious(0) benign(0.005) TCGA-EB-A57M-01 19 49494741 49494741 C T GYS1 Splice_Site p.X40_splice 0.05 TCGA-EB-A57M-01 19 50165584 50165584 C T IRF3 Silent p.E201E 0.08 TCGA-EB-A57M-01 19 9236941 9236941 G T OR7G3 Missense_Mutation p.P229Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-EB-A57M-01 1 162325027 162325027 A T NOS1AP Missense_Mutation p.T216S 0.21 tolerated(0.2) benign(0.051) TCGA-EB-A57M-01 1 26107512 26107512 T A MAN1C1 Missense_Mutation p.I520N 0.04 deleterious(0) probably_damaging(0.927) TCGA-EB-A57M-01 20 34800252 34800252 C T EPB41L1 Missense_Mutation p.P713L 0.10 tolerated(0.18) benign(0.002) TCGA-EB-A57M-01 21 47831449 47831449 A T PCNT Missense_Mutation p.Q1821L 0.15 benign(0.403) TCGA-EB-A57M-01 21 47831454 47831454 C G PCNT Missense_Mutation p.R1823G 0.15 possibly_damaging(0.726) TCGA-EB-A57M-01 2 113943774 113943774 G C PSD4 Missense_Mutation p.A524P 0.50 deleterious(0) possibly_damaging(0.665) TCGA-EB-A57M-01 2 186672004 186672004 G A FSIP2 Missense_Mutation p.A6080T 0.13 benign(0.166) TCGA-EB-A57M-01 2 31489524 31489524 T G EHD3 Missense_Mutation p.L521R 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A57M-01 2 32475156 32475156 C T NLRC4 Missense_Mutation p.D593N 0.36 tolerated(0.18) benign(0.048) TCGA-EB-A57M-01 2 9458656 9458656 C G ASAP2 Missense_Mutation p.Q117E 0.17 deleterious(0) benign(0.02) TCGA-EB-A57M-01 3 121414449 121414449 C A GOLGB1 Missense_Mutation p.V1641L 0.11 benign(0.021) TCGA-EB-A57M-01 3 141644533 141644533 C T ATP1B3 Missense_Mutation p.A277V 0.22 tolerated(1) benign(0.002) TCGA-EB-A57M-01 3 45077303 45077303 G T CLEC3B Missense_Mutation p.D166Y 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A57M-01 3 74350629 74350630 TC - CNTN3 Frame_Shift_Del p.E672Ifs*7 0.11 TCGA-EB-A57M-01 4 110384573 110384573 C A SEC24B Missense_Mutation p.P217Q 0.30 deleterious_low_confidence(0.01) benign(0.329) TCGA-EB-A57M-01 4 47563064 47563064 G A ATP10D Missense_Mutation p.M880I 0.11 tolerated(0.53) benign(0.002) TCGA-EB-A57M-01 4 47939474 47939474 G T CNGA1 Missense_Mutation p.A415D 0.05 deleterious(0.03) possibly_damaging(0.481) TCGA-EB-A57M-01 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A57M-01 5 150901209 150901209 G A FAT2 Missense_Mutation p.R3649W 0.42 probably_damaging(1) TCGA-EB-A57M-01 5 156349163 156349163 G A TIMD4 Missense_Mutation p.A320V 0.08 tolerated(0.13) benign(0.041) TCGA-EB-A57M-01 5 156635998 156635998 G A ITK Silent p.P79P 0.28 TCGA-EB-A57M-01 5 23526497 23526497 G T PRDM9 Missense_Mutation p.D434Y 0.16 tolerated(0.12) benign(0.276) TCGA-EB-A57M-01 5 36680565 36680565 G A SLC1A3 Missense_Mutation p.R388K 0.29 deleterious(0) possibly_damaging(0.588) TCGA-EB-A57M-01 5 37173872 37173877 CATTTC AATTT C5orf42 Frame_Shift_Del p.E2051Kfs*5 0.18 TCGA-EB-A57M-01 5 37173934 37173934 C T C5orf42 Missense_Mutation p.E2032K 0.10 deleterious(0.05) possibly_damaging(0.474) TCGA-EB-A57M-01 5 74872667 74872667 C T POLK Silent p.Y201Y 0.38 TCGA-EB-A57M-01 6 13584311 13584311 G A SIRT5 5'UTR 0.53 TCGA-EB-A57M-01 6 152576787 152576787 C T SYNE1 Missense_Mutation p.R6400H 0.11 benign(0.003) TCGA-EB-A57M-01 6 26156603 26156603 C T HIST1H1E 5'UTR 0.07 TCGA-EB-A57M-01 6 30861184 30861184 G A DDR1 Missense_Mutation p.R444H 0.11 deleterious(0.04) possibly_damaging(0.707) TCGA-EB-A57M-01 7 130025091 130025091 A T CPA1 Missense_Mutation p.N298Y 0.05 deleterious(0) probably_damaging(0.95) TCGA-EB-A57M-01 7 20180699 20180699 A G MACC1 Missense_Mutation p.L810P 0.06 deleterious(0) probably_damaging(0.999) TCGA-EB-A57M-01 7 82546073 82546073 C A PCLO Missense_Mutation p.M3743I 0.04 unknown(0) TCGA-EB-A57M-01 7 90419893 90419893 A G CDK14 Missense_Mutation p.N139S 0.20 deleterious(0.04) benign(0.171) TCGA-EB-A57M-01 8 10465813 10465813 T A RP1L1 Missense_Mutation p.E1932V 0.10 unknown(0) TCGA-EB-A57M-01 8 38146118 38146118 C T WHSC1L1 Missense_Mutation p.A1130T 0.34 deleterious(0) probably_damaging(0.998) TCGA-EB-A57M-01 9 139393443 139393443 A G NOTCH1 Missense_Mutation p.S2030P 0.12 deleterious(0.04) probably_damaging(1) TCGA-EB-A5FP-01 10 103531316 103531316 G A FGF8 Silent p.I116I 0.61 TCGA-EB-A5FP-01 10 104175852 104175852 C T PSD Missense_Mutation p.E227K 0.68 deleterious_low_confidence(0) benign(0.437) TCGA-EB-A5FP-01 10 122348819 122348819 C T PPAPDC1A Silent p.S207S 0.84 TCGA-EB-A5FP-01 10 124361432 124361432 G A DMBT1 Missense_Mutation p.D1155N 0.70 tolerated(0.06) probably_damaging(0.998) TCGA-EB-A5FP-01 10 23270289 23270289 C T ARMC3 Missense_Mutation p.H313Y 0.64 deleterious(0) possibly_damaging(0.846) TCGA-EB-A5FP-01 10 24822089 24822089 C T KIAA1217 Missense_Mutation p.P1113S 0.73 deleterious(0.02) possibly_damaging(0.615) TCGA-EB-A5FP-01 10 25887805 25887805 G A GPR158 Missense_Mutation p.D1084N 0.71 tolerated(0.29) benign(0.013) TCGA-EB-A5FP-01 10 28149630 28149630 G A ARMC4 Missense_Mutation p.A982V 0.71 deleterious(0) possibly_damaging(0.871) TCGA-EB-A5FP-01 10 46999626 46999626 C T GPRIN2 Missense_Mutation p.A249V 0.33 tolerated(0.31) benign(0.012) TCGA-EB-A5FP-01 10 46999627 46999627 C T GPRIN2 Silent p.A249A 0.33 TCGA-EB-A5FP-01 10 50121772 50121772 C T LRRC18 Silent p.L143L 0.65 TCGA-EB-A5FP-01 10 7627883 7627883 G A ITIH5 Silent p.H363H 0.39 TCGA-EB-A5FP-01 10 77158747 77158747 G A ZNF503 Silent p.A567A 0.79 TCGA-EB-A5FP-01 10 87628917 87628917 G A GRID1 Silent p.I267I 0.75 TCGA-EB-A5FP-01 10 92508952 92508952 C T HTR7 Silent p.R313R 0.71 TCGA-EB-A5FP-01 10 98188433 98188433 C T TLL2 Missense_Mutation p.R198K 0.82 tolerated(0.09) benign(0.013) TCGA-EB-A5FP-01 11 106810489 106810489 G A GUCY1A2 Silent p.I301I 0.46 TCGA-EB-A5FP-01 11 111657057 111657057 G A ALG9 3'UTR 0.39 TCGA-EB-A5FP-01 11 113286217 113286217 G A DRD2 Missense_Mutation p.R217C 0.40 deleterious(0) probably_damaging(0.988) TCGA-EB-A5FP-01 11 117279608 117279608 C T CEP164 Silent p.A1204A 0.34 TCGA-EB-A5FP-01 11 1220120 1220120 G A MUC5AC RNA 0.10 TCGA-EB-A5FP-01 11 123810339 123810339 C T OR4D5 Missense_Mutation p.H6Y 0.40 tolerated(1) benign(0.001) TCGA-EB-A5FP-01 11 123894601 123894601 G A OR10G9 Silent p.V294V 0.33 TCGA-EB-A5FP-01 11 12886424 12886424 C T TEAD1 Missense_Mutation p.R103C 0.33 deleterious(0) probably_damaging(0.995) TCGA-EB-A5FP-01 11 134252878 134252878 G A B3GAT1 Missense_Mutation p.S215F 0.46 deleterious(0) probably_damaging(0.998) TCGA-EB-A5FP-01 11 18231727 18231727 G A RP11-113D6.10 3'UTR 0.43 TCGA-EB-A5FP-01 11 26725165 26725165 C T SLC5A12 Missense_Mutation p.G245E 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 11 27016471 27016471 C T FIBIN Missense_Mutation p.S133L 0.40 tolerated_low_confidence(0.09) probably_damaging(0.995) TCGA-EB-A5FP-01 11 34135361 34135361 C T NAT10 Silent p.L157L 0.27 TCGA-EB-A5FP-01 11 47193054 47193054 C T ARFGAP2 Silent p.E288E 0.38 TCGA-EB-A5FP-01 11 47267111 47267111 G A ACP2 Missense_Mutation p.P155S 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 11 4936223 4936223 G A OR51G2 Missense_Mutation p.A224V 0.30 tolerated(1) benign(0.032) TCGA-EB-A5FP-01 11 552638 552638 C T LRRC56 Silent p.V417V 0.47 TCGA-EB-A5FP-01 11 58317506 58317506 G A LPXN Silent p.P205P 0.42 TCGA-EB-A5FP-01 11 58920169 58920169 C T FAM111A Missense_Mutation p.S343L 0.35 tolerated(0.39) benign(0.001) TCGA-EB-A5FP-01 11 59211250 59211250 C T OR5A1 Silent p.F203F 0.46 TCGA-EB-A5FP-01 11 62559436 62559436 C G TMEM223 Missense_Mutation p.G11R 0.59 tolerated_low_confidence(0.71) benign(0.003) TCGA-EB-A5FP-01 11 6292136 6292136 G A CCKBR Intron 0.56 TCGA-EB-A5FP-01 11 64117137 64117137 C T CCDC88B Silent p.F953F 0.20 TCGA-EB-A5FP-01 11 64117138 64117138 C T CCDC88B Nonsense_Mutation p.Q954* 0.20 TCGA-EB-A5FP-01 11 6541303 6541303 C T DNHD1 Silent p.L586L 0.50 TCGA-EB-A5FP-01 11 67171735 67171735 C T TBC1D10C Missense_Mutation p.S21F 0.44 deleterious(0) probably_damaging(0.993) TCGA-EB-A5FP-01 11 6816325 6816325 G A OR6A2 Silent p.F205F 0.39 TCGA-EB-A5FP-01 11 71907223 71907223 C T FOLR1 3'UTR 0.40 TCGA-EB-A5FP-01 11 72288403 72288403 G A PDE2A 3'UTR 0.32 TCGA-EB-A5FP-01 11 73997411 73997411 C T P4HA3 Silent p.R265R 0.41 TCGA-EB-A5FP-01 11 7722922 7722922 C T OVCH2 Silent p.G220G 0.48 TCGA-EB-A5FP-01 11 7817749 7817749 G A OR5P2 Silent p.F247F 0.43 TCGA-EB-A5FP-01 11 78440669 78440669 G A TENM4 Missense_Mutation p.S1053F 0.48 deleterious(0.04) benign(0.035) TCGA-EB-A5FP-01 11 93129436 93129436 C T CCDC67 Missense_Mutation p.T424I 0.44 tolerated(0.5) possibly_damaging(0.691) TCGA-EB-A5FP-01 11 94918623 94918623 G A SESN3 Silent p.L187L 0.39 TCGA-EB-A5FP-01 12 100169397 100169397 G A ANKS1B Missense_Mutation p.P297L 0.29 tolerated(0.05) benign(0.009) TCGA-EB-A5FP-01 12 104489342 104489342 G C HCFC2 Splice_Site p.X556_splice 0.53 TCGA-EB-A5FP-01 12 105428098 105428098 C T ALDH1L2 Missense_Mutation p.D742N 0.47 deleterious(0.02) benign(0.327) TCGA-EB-A5FP-01 12 107236477 107236477 C G RIC8B Missense_Mutation p.P316R 0.41 deleterious(0) benign(0.202) TCGA-EB-A5FP-01 12 108642182 108642182 G A WSCD2 3'UTR 0.50 TCGA-EB-A5FP-01 12 109288105 109288105 G A DAO Missense_Mutation p.D192N 0.19 deleterious(0) probably_damaging(0.975) TCGA-EB-A5FP-01 12 109889441 109889441 G A KCTD10 Missense_Mutation p.H301Y 0.46 deleterious_low_confidence(0) benign(0.403) TCGA-EB-A5FP-01 12 112673351 112673351 G A HECTD4 Silent p.I1748I 0.59 TCGA-EB-A5FP-01 12 117658007 117658007 C T NOS1 Missense_Mutation p.G1382E 0.26 tolerated(0.31) possibly_damaging(0.836) TCGA-EB-A5FP-01 12 117658008 117658008 C T NOS1 Missense_Mutation p.G1382R 0.27 tolerated(0.26) benign(0.211) TCGA-EB-A5FP-01 12 119943076 119943076 C T CCDC60 Missense_Mutation p.S284L 0.30 deleterious(0.04) benign(0.226) TCGA-EB-A5FP-01 12 132334550 132334550 C T MMP17 Missense_Mutation p.P470S 0.38 tolerated(1) benign(0.098) TCGA-EB-A5FP-01 12 1749036 1749036 C T WNT5B Missense_Mutation p.A172V 0.27 deleterious(0.01) possibly_damaging(0.903) TCGA-EB-A5FP-01 12 18891340 18891340 C T CAPZA3 Silent p.H46H 0.52 TCGA-EB-A5FP-01 12 3103987 3103987 C T TEAD4 Missense_Mutation p.P19S 0.34 deleterious(0.01) possibly_damaging(0.528) TCGA-EB-A5FP-01 12 3103988 3103988 C T TEAD4 Missense_Mutation p.P19L 0.33 deleterious(0) possibly_damaging(0.61) TCGA-EB-A5FP-01 12 42858400 42858400 C T PRICKLE1 Missense_Mutation p.G479E 0.44 tolerated(0.07) probably_damaging(1) TCGA-EB-A5FP-01 12 44915955 44915955 C T NELL2 Missense_Mutation p.G718E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 12 48723755 48723755 G A H1FNT Silent p.P227P 0.40 TCGA-EB-A5FP-01 12 52162753 52162753 C T SCN8A Silent p.I1002I 0.50 TCGA-EB-A5FP-01 12 58139636 58139636 C T TSPAN31 Missense_Mutation p.L58F 0.59 tolerated(0.23) benign(0.257) TCGA-EB-A5FP-01 12 6858106 6858106 G A MLF2 Missense_Mutation p.S201F 0.48 tolerated(0.19) benign(0.197) TCGA-EB-A5FP-01 12 6939883 6939883 C T LEPREL2 Missense_Mutation p.P311S 0.22 deleterious(0.03) benign(0.029) TCGA-EB-A5FP-01 12 70932725 70932725 G A PTPRB Nonsense_Mutation p.R1950* 0.53 TCGA-EB-A5FP-01 12 7469784 7469784 G A ACSM4 Missense_Mutation p.M224I 0.21 deleterious(0.04) benign(0.248) TCGA-EB-A5FP-01 12 75804348 75804348 C T GLIPR1L2 Silent p.G123G 0.47 TCGA-EB-A5FP-01 12 7980198 7980198 C T SLC2A14 Missense_Mutation p.E276K 0.34 deleterious(0.02) possibly_damaging(0.827) TCGA-EB-A5FP-01 12 8082387 8082387 C T SLC2A3 Missense_Mutation p.E252K 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-EB-A5FP-01 12 81719571 81719571 C T PPFIA2 Missense_Mutation p.R876Q 0.32 deleterious(0) possibly_damaging(0.569) TCGA-EB-A5FP-01 12 8377378 8377378 G A FAM90A1 Silent p.A17A 0.20 TCGA-EB-A5FP-01 12 86199629 86199629 G A RASSF9 Silent p.I53I 0.27 TCGA-EB-A5FP-01 12 8667851 8667851 C T CLEC4D Silent p.P16P 0.45 TCGA-EB-A5FP-01 12 93100530 93100530 C T C12orf74 Silent p.A41A 0.45 TCGA-EB-A5FP-01 12 9717819 9717819 C T RP11-726G1.1 RNA 0.74 TCGA-EB-A5FP-01 13 27241707 27241707 G C WASF3 Missense_Mutation p.D108H 0.10 deleterious(0) probably_damaging(0.982) TCGA-EB-A5FP-01 13 32823810 32823810 C T FRY Missense_Mutation p.P2386S 0.07 deleterious(0.03) probably_damaging(1) TCGA-EB-A5FP-01 13 49039149 49039179 TTGATCAAAGAAGAGGAGTATGATTCTATTA - RB1 Frame_Shift_Del p.L743* 0.65 TCGA-EB-A5FP-01 13 99047654 99047654 G A FARP1 Silent p.A446A 0.16 TCGA-EB-A5FP-01 14 105416256 105416256 G A AHNAK2 Silent p.A1844A 0.40 TCGA-EB-A5FP-01 14 106174454 106174454 G A IGHA1 Missense_Mutation p.P112L 0.33 tolerated(0.28) benign(0.007) TCGA-EB-A5FP-01 14 106586539 106586539 C T IGHV3-13 Intron 0.44 TCGA-EB-A5FP-01 14 106805624 106805624 G A IGHV4-31 Silent p.F7F 0.23 TCGA-EB-A5FP-01 14 20248980 20248980 C T OR4M1 Missense_Mutation p.P167S 0.43 deleterious(0.01) probably_damaging(1) TCGA-EB-A5FP-01 14 22337072 22337072 C T TRAV13-1 Silent p.F10F 0.53 TCGA-EB-A5FP-01 14 22476271 22476271 C T TRAV19 Silent p.F67F 0.55 TCGA-EB-A5FP-01 14 45624018 45624018 C T FANCM Silent p.I434I 0.20 TCGA-EB-A5FP-01 14 59951170 59951170 G A JKAMP 5'UTR 0.33 TCGA-EB-A5FP-01 14 60581743 60581743 C T PCNXL4 Silent p.F73F 0.48 TCGA-EB-A5FP-01 14 60585321 60585321 C T PCNXL4 Missense_Mutation p.A384V 0.40 deleterious(0.02) probably_damaging(0.937) TCGA-EB-A5FP-01 14 61919987 61919987 C T PRKCH Silent p.A292A 0.45 TCGA-EB-A5FP-01 14 65234457 65234457 A C SPTB Missense_Mutation p.I2048S 0.40 deleterious(0) possibly_damaging(0.799) TCGA-EB-A5FP-01 14 69256433 69256433 G A ZFP36L1 Silent p.L278L 0.44 TCGA-EB-A5FP-01 14 71576522 71576522 G A PCNX Missense_Mutation p.R2299Q 0.42 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EB-A5FP-01 14 74186187 74186187 G A ELMSAN1 Silent p.I985I 0.33 TCGA-EB-A5FP-01 14 95029918 95029918 C A SERPINA4 Missense_Mutation p.N33K 0.41 tolerated(0.17) benign(0.024) TCGA-EB-A5FP-01 14 95090279 95090279 C T SERPINA3 3'UTR 0.44 TCGA-EB-A5FP-01 14 96917848 96917848 G A AK7 Missense_Mutation p.G347R 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 14 99640787 99640787 C T BCL11B Missense_Mutation p.D796N 0.38 deleterious(0) benign(0.053) TCGA-EB-A5FP-01 15 20489461 20489461 C T CHEK2P2 RNA 0.07 TCGA-EB-A5FP-01 15 22368704 22368704 C T OR4M2 Silent p.I43I 0.17 TCGA-EB-A5FP-01 15 22382565 22382565 C T OR4N4 Silent p.I31I 0.16 TCGA-EB-A5FP-01 15 22473173 22473173 G A IGHV4OR15-8 Missense_Mutation p.P33L 0.11 deleterious(0.01) possibly_damaging(0.726) TCGA-EB-A5FP-01 15 23114279 23114279 C A RP11-566K19.6 RNA 0.47 TCGA-EB-A5FP-01 15 24921298 24921298 G A NPAP1 Missense_Mutation p.R95K 0.49 tolerated(1) benign(0.068) TCGA-EB-A5FP-01 15 24921299 24921299 G A NPAP1 Silent p.R95R 0.46 TCGA-EB-A5FP-01 15 32449891 32449891 G A CHRNA7 Nonsense_Mutation p.W200* 0.92 TCGA-EB-A5FP-01 15 41801262 41801262 G A LTK Missense_Mutation p.P355S 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A5FP-01 15 41828393 41828393 G A RPAP1 Silent p.A118A 0.44 TCGA-EB-A5FP-01 15 42361069 42361069 G A PLA2G4D Silent p.T767T 0.41 TCGA-EB-A5FP-01 15 42364019 42364019 C T PLA2G4D Missense_Mutation p.G509E 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 15 43527848 43527848 G A TGM5 Silent p.F511F 0.39 TCGA-EB-A5FP-01 15 45047410 45047410 C T TRIM69 Missense_Mutation p.P107S 0.46 tolerated(0.51) benign(0.008) TCGA-EB-A5FP-01 15 49327685 49327685 G A SECISBP2L Missense_Mutation p.P125L 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 15 50833271 50833271 G A USP50 Missense_Mutation p.P212L 0.41 deleterious(0.03) probably_damaging(1) TCGA-EB-A5FP-01 15 52188633 52188633 C T TMOD3 Silent p.T215T 0.29 TCGA-EB-A5FP-01 15 52879396 52879396 G A FAM214A Silent p.S943S 0.29 TCGA-EB-A5FP-01 15 65319317 65319317 G A MTFMT Missense_Mutation p.P91S 0.38 tolerated(0.14) possibly_damaging(0.635) TCGA-EB-A5FP-01 15 65347153 65347153 G A RASL12 3'UTR 0.43 TCGA-EB-A5FP-01 15 66729163 66729163 C T MAP2K1 Missense_Mutation p.P124L 0.42 deleterious(0) probably_damaging(0.995) TCGA-EB-A5FP-01 15 73562546 73562546 C T NEO1 Missense_Mutation p.T897I 0.35 deleterious(0.01) probably_damaging(1) TCGA-EB-A5FP-01 15 91578400 91578400 C T AC068831.10 RNA 0.28 TCGA-EB-A5FP-01 16 16180682 16180682 G A ABCC1 Missense_Mutation p.G765D 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A5FP-01 16 17211801 17211801 G A XYLT1 Silent p.F753F 0.34 TCGA-EB-A5FP-01 16 19883961 19883961 G A GPRC5B Silent p.I69I 0.42 TCGA-EB-A5FP-01 16 20975383 20975383 C T DNAH3 Missense_Mutation p.E3275K 0.44 tolerated(0.42) benign(0.086) TCGA-EB-A5FP-01 16 21737921 21737921 C T OTOA Missense_Mutation p.S653F 0.49 tolerated(0.7) benign(0.013) TCGA-EB-A5FP-01 16 25251253 25251253 G A ZKSCAN2 Missense_Mutation p.L930F 0.38 deleterious(0.02) benign(0.297) TCGA-EB-A5FP-01 16 29906757 29906757 C T SEZ6L2 Missense_Mutation p.E226K 0.40 tolerated(0.1) benign(0.261) TCGA-EB-A5FP-01 16 32891869 32891869 G A SLC6A10P RNA 0.42 TCGA-EB-A5FP-01 16 3434377 3434377 C A ZSCAN32 Intron 0.29 TCGA-EB-A5FP-01 16 47722954 47722954 G A PHKB Nonsense_Mutation p.W878* 0.45 TCGA-EB-A5FP-01 16 48201044 48201044 C T ABCC11 3'UTR 0.47 TCGA-EB-A5FP-01 16 51171240 51171240 G A SALL1 Missense_Mutation p.S1253F 0.36 deleterious(0) probably_damaging(0.998) TCGA-EB-A5FP-01 16 56926025 56926025 G A SLC12A3 Missense_Mutation p.G800E 0.37 tolerated(0.76) benign(0.001) TCGA-EB-A5FP-01 16 57719742 57719742 C T GPR97 Missense_Mutation p.L482F 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 16 58035441 58035441 C T USB1 Silent p.S18S 0.46 TCGA-EB-A5FP-01 16 68010058 68010058 C T DPEP3 Missense_Mutation p.E415K 0.46 deleterious(0.04) benign(0.416) TCGA-EB-A5FP-01 16 69985308 69985308 C T CLEC18A Silent p.L13L 0.32 TCGA-EB-A5FP-01 16 70390100 70390100 G A DDX19A Silent p.R81R 0.80 TCGA-EB-A5FP-01 16 70989452 70989452 C T HYDIN Splice_Site p.X2048_splice 0.35 TCGA-EB-A5FP-01 16 71012930 71012930 C T HYDIN Missense_Mutation p.E1509K 0.22 benign(0.058) TCGA-EB-A5FP-01 16 71668215 71668215 C T MARVELD3 Intron 0.38 TCGA-EB-A5FP-01 16 72821358 72821358 G A ZFHX3 Missense_Mutation p.S3606F 0.58 unknown(0) TCGA-EB-A5FP-01 16 830195 830195 G A MSLNL Missense_Mutation p.P269L 0.32 probably_damaging(0.958) TCGA-EB-A5FP-01 16 830819 830819 G A MSLNL Missense_Mutation p.P61L 0.38 benign(0) TCGA-EB-A5FP-01 16 9017204 9017204 G A USP7 Missense_Mutation p.S84L 0.34 deleterious(0.01) possibly_damaging(0.668) TCGA-EB-A5FP-01 17 10250059 10250059 G A MYH13 Silent p.L401L 0.37 TCGA-EB-A5FP-01 17 10435045 10435045 C T MYH2 Missense_Mutation p.E868K 0.33 tolerated(0.38) benign(0.015) TCGA-EB-A5FP-01 17 10447097 10447097 G A MYH2 Silent p.I224I 0.40 TCGA-EB-A5FP-01 17 11592945 11592945 A C DNAH9 Missense_Mutation p.E1269A 0.43 benign(0.271) TCGA-EB-A5FP-01 17 12860056 12860056 C T ARHGAP44 Silent p.F445F 0.39 TCGA-EB-A5FP-01 17 27959445 27959445 G A SSH2 Missense_Mutation p.R896C 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A5FP-01 17 2901664 2901664 C T RAP1GAP2 Silent p.S398S 0.68 TCGA-EB-A5FP-01 17 33802331 33802331 G A SLFN12L Missense_Mutation p.L460F 0.47 deleterious(0.01) probably_damaging(0.965) TCGA-EB-A5FP-01 17 33802332 33802332 G A SLFN12L Silent p.V459V 0.46 TCGA-EB-A5FP-01 17 36872712 36872712 C T MLLT6 Missense_Mutation p.P377S 0.44 tolerated(0.87) unknown(0) TCGA-EB-A5FP-01 17 37187477 37187477 C T CTD-2206N4.2 5'Flank 0.42 TCGA-EB-A5FP-01 17 38133236 38133236 C T GSDMA Silent p.D421D 0.38 TCGA-EB-A5FP-01 17 39254277 39254277 G A KRTAP4-8 Silent p.C20C 0.46 TCGA-EB-A5FP-01 17 39551735 39551735 C T KRT31 Silent p.V243V 0.40 TCGA-EB-A5FP-01 17 40985824 40985824 C T PSME3 Intron 0.45 TCGA-EB-A5FP-01 17 41008456 41008456 G A AOC3 Silent p.G727G 0.45 TCGA-EB-A5FP-01 17 41222962 41222962 G A BRCA1 Silent p.L1678L 0.41 TCGA-EB-A5FP-01 17 41939175 41939175 G A CD300LG Missense_Mutation p.E299K 0.23 tolerated(0.08) possibly_damaging(0.625) TCGA-EB-A5FP-01 17 42807320 42807320 C T DBF4B Silent p.S91S 0.41 TCGA-EB-A5FP-01 17 42807321 42807321 C T DBF4B Missense_Mutation p.R92C 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-EB-A5FP-01 17 4646624 4646624 G A ZMYND15 Missense_Mutation p.E391K 0.74 tolerated(0.09) probably_damaging(0.989) TCGA-EB-A5FP-01 17 46867322 46867322 G A TTLL6 Silent p.F457F 0.52 TCGA-EB-A5FP-01 17 51902427 51902427 G A KIF2B 3'UTR 0.56 TCGA-EB-A5FP-01 17 56638929 56638929 G A TEX14 Missense_Mutation p.P1416L 0.44 tolerated(0.11) benign(0.008) TCGA-EB-A5FP-01 17 61570991 61570991 A G ACE Missense_Mutation p.N1036S 0.38 deleterious(0.03) benign(0.02) TCGA-EB-A5FP-01 17 63221659 63221659 C T RGS9 Intron 0.39 TCGA-EB-A5FP-01 17 72709031 72709031 C T CD300LF 5'UTR 0.36 TCGA-EB-A5FP-01 17 72709032 72709032 C T CD300LF 5'UTR 0.36 TCGA-EB-A5FP-01 17 73316468 73316468 G A GRB2 Missense_Mutation p.P212L 0.35 deleterious(0.04) benign(0.11) TCGA-EB-A5FP-01 17 73488620 73488620 G A KIAA0195 Silent p.E554E 0.37 TCGA-EB-A5FP-01 17 74001451 74001451 C T CDK3 Missense_Mutation p.P289S 0.53 tolerated_low_confidence(0.57) benign(0.001) TCGA-EB-A5FP-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.85 TCGA-EB-A5FP-01 17 76136987 76136987 C T TMC8 Missense_Mutation p.P659S 0.45 tolerated(0.64) benign(0.013) TCGA-EB-A5FP-01 17 7696104 7696104 C T DNAH2 Silent p.I2425I 0.84 TCGA-EB-A5FP-01 17 79612584 79612584 C T TSPAN10 Silent p.F201F 0.32 TCGA-EB-A5FP-01 18 14852066 14852066 G A ANKRD30B Missense_Mutation p.E1256K 0.42 deleterious(0) probably_damaging(0.953) TCGA-EB-A5FP-01 18 20877855 20877855 C T TMEM241 3'UTR 0.33 TCGA-EB-A5FP-01 18 21197786 21197786 G A ANKRD29 Silent p.G211G 0.35 TCGA-EB-A5FP-01 18 21422447 21422447 C G LAMA3 Missense_Mutation p.P1142R 0.50 benign(0.078) TCGA-EB-A5FP-01 18 28659876 28659876 C T DSC2 Missense_Mutation p.D534N 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 18 28714536 28714536 A T DSC1 Missense_Mutation p.D625E 0.26 tolerated(0.07) benign(0.156) TCGA-EB-A5FP-01 18 28923534 28923534 G A DSG1 Silent p.Q603Q 0.36 TCGA-EB-A5FP-01 18 31251830 31251830 G A ASXL3 Missense_Mutation p.G239R 0.29 probably_damaging(1) TCGA-EB-A5FP-01 18 40503686 40503686 C T RIT2 Missense_Mutation p.E93K 0.39 deleterious(0.05) probably_damaging(0.998) TCGA-EB-A5FP-01 18 43212418 43212418 C T SLC14A2 Missense_Mutation p.P209S 0.34 deleterious(0) possibly_damaging(0.84) TCGA-EB-A5FP-01 18 44560364 44560364 C T TCEB3B Nonsense_Mutation p.W424* 0.36 TCGA-EB-A5FP-01 18 48256178 48256178 C T MAPK4 Missense_Mutation p.P573L 0.45 deleterious_low_confidence(0) benign(0.136) TCGA-EB-A5FP-01 18 56202594 56202594 G A ALPK2 Missense_Mutation p.P1609S 0.44 tolerated(0.08) possibly_damaging(0.743) TCGA-EB-A5FP-01 18 60795886 60795886 G A BCL2 Missense_Mutation p.T231I 0.44 deleterious(0) possibly_damaging(0.89) TCGA-EB-A5FP-01 18 65179995 65179995 C T DSEL Missense_Mutation p.M627I 0.48 tolerated(0.34) benign(0.012) TCGA-EB-A5FP-01 18 77171113 77171113 C T NFATC1 Missense_Mutation p.H267Y 0.51 deleterious(0.02) benign(0.209) TCGA-EB-A5FP-01 19 13264475 13264475 C T IER2 Missense_Mutation p.R159C 0.75 tolerated(0.07) probably_damaging(0.91) TCGA-EB-A5FP-01 19 15740130 15740130 G A CYP4F8 RNA 0.50 TCGA-EB-A5FP-01 19 17057989 17057989 G A CPAMD8 Missense_Mutation p.P900S 0.75 tolerated(0.22) possibly_damaging(0.669) TCGA-EB-A5FP-01 19 19655604 19655604 C T CILP2 Silent p.T750T 0.62 TCGA-EB-A5FP-01 19 20003224 20003224 C T ZNF253 Missense_Mutation p.H390Y 0.84 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A5FP-01 19 35556773 35556773 G A HPN Missense_Mutation p.G351D 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 19 37734148 37734148 C T ZNF383 Missense_Mutation p.P337L 0.40 tolerated(0.09) probably_damaging(0.999) TCGA-EB-A5FP-01 19 38774391 38774391 T A SPINT2 Missense_Mutation p.N77K 0.48 deleterious(0) probably_damaging(0.987) TCGA-EB-A5FP-01 19 40900204 40900204 G A PRX Missense_Mutation p.P1352L 0.30 deleterious(0.03) possibly_damaging(0.851) TCGA-EB-A5FP-01 19 43411239 43411239 G A PSG6 Missense_Mutation p.P359S 0.45 tolerated(0.08) probably_damaging(1) TCGA-EB-A5FP-01 19 43586745 43586745 C T PSG2 5'UTR 0.46 TCGA-EB-A5FP-01 19 43763263 43763263 G A PSG9 Missense_Mutation p.T245I 0.39 deleterious(0.04) benign(0.073) TCGA-EB-A5FP-01 19 47280252 47280252 G A SLC1A5 Silent p.I456I 0.50 TCGA-EB-A5FP-01 19 50548927 50548927 G A ZNF473 Silent p.G409G 0.45 TCGA-EB-A5FP-01 19 51022222 51022222 G A LRRC4B Nonsense_Mutation p.Q250* 0.37 TCGA-EB-A5FP-01 19 51379771 51379771 G A KLK2 Missense_Mutation p.E84K 0.40 deleterious(0.01) possibly_damaging(0.863) TCGA-EB-A5FP-01 19 51462453 51462453 C T KLK6 Silent p.T234T 0.38 TCGA-EB-A5FP-01 19 51649133 51649133 G A SIGLEC7 Missense_Mutation p.S261N 0.38 deleterious(0.01) benign(0.288) TCGA-EB-A5FP-01 19 52824988 52824988 C T ZNF480 Missense_Mutation p.S162F 0.39 tolerated(0.13) probably_damaging(0.996) TCGA-EB-A5FP-01 19 53014536 53014536 C T ZNF578 Missense_Mutation p.S301F 0.44 tolerated(0.58) possibly_damaging(0.693) TCGA-EB-A5FP-01 19 7755042 7755042 C T FCER2 Intron 0.72 TCGA-EB-A5FP-01 19 9060773 9060773 C T MUC16 Missense_Mutation p.M8891I 0.71 unknown(0) TCGA-EB-A5FP-01 19 9074350 9074350 A T MUC16 Missense_Mutation p.F4366I 0.76 unknown(0) TCGA-EB-A5FP-01 1 103400100 103400100 C T COL11A1 Missense_Mutation p.E1169K 0.37 unknown(0) TCGA-EB-A5FP-01 1 103471841 103471841 G A COL11A1 Missense_Mutation p.P572S 0.38 unknown(0) TCGA-EB-A5FP-01 1 110754769 110754769 C T KCNC4 Silent p.F216F 0.67 TCGA-EB-A5FP-01 1 111690389 111690389 C T CEPT1 Missense_Mutation p.S18F 0.56 tolerated_low_confidence(0.16) benign(0) TCGA-EB-A5FP-01 1 111854319 111854319 C T CHIA Missense_Mutation p.L12F 0.37 tolerated(0.12) possibly_damaging(0.587) TCGA-EB-A5FP-01 1 1164180 1164180 G A SDF4 5'UTR 0.53 TCGA-EB-A5FP-01 1 12806401 12806401 C T C1orf158 Missense_Mutation p.P8L 0.39 tolerated(0.06) probably_damaging(0.982) TCGA-EB-A5FP-01 1 12835736 12835736 G A PRAMEF12 Nonsense_Mutation p.W113* 0.38 TCGA-EB-A5FP-01 1 1309109 1309109 G A AURKAIP1 3'Flank 0.28 TCGA-EB-A5FP-01 1 14107381 14107381 C T PRDM2 Missense_Mutation p.P1031S 0.41 unknown(0) TCGA-EB-A5FP-01 1 150526312 150526312 G A ADAMTSL4 Missense_Mutation p.R282Q 0.52 tolerated(0.13) benign(0.022) TCGA-EB-A5FP-01 1 152128293 152128293 C T RPTN Missense_Mutation p.G428S 0.35 tolerated(0.1) benign(0.152) TCGA-EB-A5FP-01 1 152325089 152325089 C T FLG2 Missense_Mutation p.G1725R 0.32 probably_damaging(0.953) TCGA-EB-A5FP-01 1 152552341 152552341 C T LCE3D Silent p.K24K 0.30 TCGA-EB-A5FP-01 1 156843485 156843485 C T NTRK1 Missense_Mutation p.S304F 0.45 deleterious(0) probably_damaging(0.973) TCGA-EB-A5FP-01 1 161011928 161011928 G A USF1 Missense_Mutation p.P85L 0.44 deleterious(0.01) benign(0.098) TCGA-EB-A5FP-01 1 161022151 161022151 C T ARHGAP30 Missense_Mutation p.D315N 0.54 deleterious(0.02) benign(0.044) TCGA-EB-A5FP-01 1 167511322 167511322 G A CREG1 3'UTR 0.53 TCGA-EB-A5FP-01 1 169578900 169578900 G A SELP Missense_Mutation p.P392L 0.38 deleterious(0.04) possibly_damaging(0.86) TCGA-EB-A5FP-01 1 186008983 186008993 CTGTTTCTAGT - HMCN1 Frame_Shift_Del p.P2051Lfs*3 0.45 TCGA-EB-A5FP-01 1 197008410 197008410 G A F13B 3'UTR 0.29 TCGA-EB-A5FP-01 1 197024887 197024887 G A F13B Missense_Mutation p.R438C 0.38 tolerated(0.1) possibly_damaging(0.849) TCGA-EB-A5FP-01 1 198665871 198665871 C T PTPRC Missense_Mutation p.P44L 0.50 tolerated_low_confidence(1) benign(0.003) TCGA-EB-A5FP-01 1 198685878 198685878 G A PTPRC Silent p.T453T 0.37 TCGA-EB-A5FP-01 1 198725214 198725214 G A PTPRC Silent p.K1275K 0.37 TCGA-EB-A5FP-01 1 201355818 201355818 C T LAD1 Missense_Mutation p.R224K 0.43 tolerated(0.5) benign(0.034) TCGA-EB-A5FP-01 1 213061837 213061837 C T FLVCR1 Silent p.F438F 0.44 TCGA-EB-A5FP-01 1 213415998 213415998 C T RPS6KC1 Missense_Mutation p.P970S 0.13 deleterious(0.01) probably_damaging(1) TCGA-EB-A5FP-01 1 215847452 215847452 G A USH2A Missense_Mutation p.P4601S 0.54 probably_damaging(0.929) TCGA-EB-A5FP-01 1 216019169 216019169 C T USH2A Missense_Mutation p.G3018R 0.34 probably_damaging(0.984) TCGA-EB-A5FP-01 1 216173863 216173863 A C USH2A Missense_Mutation p.C2123G 0.38 probably_damaging(1) TCGA-EB-A5FP-01 1 220100392 220100392 C T SLC30A10 Silent p.K232K 0.37 TCGA-EB-A5FP-01 1 223465884 223465884 T G SUSD4 Missense_Mutation p.Q86H 0.49 deleterious(0.04) probably_damaging(0.963) TCGA-EB-A5FP-01 1 228444593 228444593 G A OBSCN Silent p.G1609G 0.52 TCGA-EB-A5FP-01 1 22902811 22902811 C T EPHA8 Silent p.S87S 0.41 TCGA-EB-A5FP-01 1 240286601 240286601 G A FMN2 Missense_Mutation p.E580K 0.60 unknown(0) TCGA-EB-A5FP-01 1 2452566 2452566 G A PANK4 Silent p.D132D 0.39 TCGA-EB-A5FP-01 1 24687524 24687524 G A STPG1 Missense_Mutation p.P249S 0.51 tolerated(0.39) benign(0.11) TCGA-EB-A5FP-01 1 247769773 247769773 G A OR2G3 Missense_Mutation p.D296N 0.41 deleterious(0.01) possibly_damaging(0.77) TCGA-EB-A5FP-01 1 248844898 248844898 G A OR14I1 Silent p.F236F 0.45 TCGA-EB-A5FP-01 1 26627455 26627455 G A UBXN11 Missense_Mutation p.S54F 0.38 deleterious(0) possibly_damaging(0.885) TCGA-EB-A5FP-01 1 3407057 3407057 G A MEGF6 3'UTR 0.44 TCGA-EB-A5FP-01 1 34666582 34666582 G A C1orf94 Missense_Mutation p.G407R 0.48 tolerated_low_confidence(0.16) benign(0.187) TCGA-EB-A5FP-01 1 36939176 36939176 A C CSF3R Missense_Mutation p.V178G 0.49 deleterious(0) possibly_damaging(0.826) TCGA-EB-A5FP-01 1 37941127 37941127 C T ZC3H12A Silent p.V10V 0.48 TCGA-EB-A5FP-01 1 40433515 40433515 A T MFSD2A Missense_Mutation p.S392C 0.42 deleterious(0) probably_damaging(0.943) TCGA-EB-A5FP-01 1 40627186 40627186 C T RLF Missense_Mutation p.P39S 0.37 tolerated_low_confidence(0.33) benign(0) TCGA-EB-A5FP-01 1 43273012 43273012 G A CCDC23 3'UTR 0.36 TCGA-EB-A5FP-01 1 43770680 43770680 C T TIE1 Missense_Mutation p.P73S 0.37 tolerated(0.9) benign(0.001) TCGA-EB-A5FP-01 1 46976737 46976737 C T DMBX1 Missense_Mutation p.T155I 0.32 deleterious(0.04) benign(0.048) TCGA-EB-A5FP-01 1 46976738 46976738 C T DMBX1 Silent p.T155T 0.31 TCGA-EB-A5FP-01 1 47489428 47489428 G A CYP4X1 5'UTR 0.50 TCGA-EB-A5FP-01 1 52991649 52991649 G A ZCCHC11 Missense_Mutation p.P102S 0.40 tolerated_low_confidence(0.13) benign(0.046) TCGA-EB-A5FP-01 1 53995593 53995593 C T GLIS1 Silent p.L276L 0.37 TCGA-EB-A5FP-01 1 70820885 70820885 C T HHLA3 Intron 0.19 TCGA-EB-A5FP-01 1 75055111 75055111 G A C1orf173 Intron 0.40 TCGA-EB-A5FP-01 1 75684215 75684215 G A SLC44A5 Missense_Mutation p.P497S 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 1 78031309 78031309 G A ZZZ3 3'UTR 0.37 TCGA-EB-A5FP-01 1 93998573 93998573 C T FNBP1L Missense_Mutation p.S245L 0.47 deleterious(0.02) benign(0.373) TCGA-EB-A5FP-01 20 13763291 13763291 T A ESF1 Nonsense_Mutation p.K166* 0.34 TCGA-EB-A5FP-01 20 168710 168710 C T DEFB128 Silent p.R33R 0.48 TCGA-EB-A5FP-01 20 23065386 23065386 C T CD93 Missense_Mutation p.D482N 0.37 tolerated(0.47) benign(0.002) TCGA-EB-A5FP-01 20 2843991 2843991 C T VPS16 Missense_Mutation p.L475F 0.51 tolerated(0.06) benign(0.035) TCGA-EB-A5FP-01 20 32336726 32336726 C T ZNF341 Intron 0.35 TCGA-EB-A5FP-01 20 34278473 34278473 G A NFS1 Silent p.F141F 0.36 TCGA-EB-A5FP-01 20 40733246 40733246 G A PTPRT Missense_Mutation p.P1168L 0.44 deleterious(0) probably_damaging(0.997) TCGA-EB-A5FP-01 20 43926645 43926645 C T MATN4 Missense_Mutation p.E498K 0.28 possibly_damaging(0.759) TCGA-EB-A5FP-01 20 58348435 58348435 C T PHACTR3 Missense_Mutation p.H285Y 0.39 tolerated(0.06) probably_damaging(0.987) TCGA-EB-A5FP-01 20 5904651 5904651 C T CHGB Missense_Mutation p.P621S 0.51 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 20 62701533 62701533 C T TCEA2 Intron 0.34 TCGA-EB-A5FP-01 20 644914 644914 C T SCRT2 Missense_Mutation p.D109N 0.64 deleterious(0.03) benign(0.055) TCGA-EB-A5FP-01 21 38537883 38537883 C T TTC3 Missense_Mutation p.P1123S 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 21 41539173 41539173 G A DSCAM Missense_Mutation p.S997L 0.46 deleterious(0) possibly_damaging(0.507) TCGA-EB-A5FP-01 21 41559180 41559180 G T DSCAM Missense_Mutation p.P886Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-EB-A5FP-01 22 18379508 18379508 G A MICAL3 Silent p.V396V 0.40 TCGA-EB-A5FP-01 22 22385758 22385758 C T IGLV4-69 Missense_Mutation p.P83S 0.48 tolerated(0.06) possibly_damaging(0.602) TCGA-EB-A5FP-01 22 23047216 23047216 C T IGLV3-22 Missense_Mutation p.S85L 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A5FP-01 22 29628339 29628339 C T EMID1 Silent p.P257P 0.44 TCGA-EB-A5FP-01 22 32555079 32555079 C T C22orf42 Missense_Mutation p.A42T 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.682) TCGA-EB-A5FP-01 22 32756848 32756848 G A RFPL3 3'UTR 0.29 TCGA-EB-A5FP-01 22 37334195 37334195 A G CSF2RB Missense_Mutation p.N782S 0.31 tolerated(0.16) benign(0.006) TCGA-EB-A5FP-01 22 41783396 41783396 G A TEF Missense_Mutation p.A67T 0.47 tolerated(0.27) benign(0.232) TCGA-EB-A5FP-01 22 42189838 42189838 C T MEI1 Silent p.D1117D 0.24 TCGA-EB-A5FP-01 22 43575640 43575640 G A TTLL12 Silent p.P275P 0.46 TCGA-EB-A5FP-01 22 50895538 50895538 G A SBF1 Missense_Mutation p.P1277S 0.53 tolerated(0.86) benign(0.001) TCGA-EB-A5FP-01 22 50926108 50926108 C T MIOX Silent p.D38D 0.41 TCGA-EB-A5FP-01 2 102835540 102835540 G A IL1RL2 Silent p.V284V 0.50 TCGA-EB-A5FP-01 2 130831825 130831825 A G POTEF Missense_Mutation p.C1074R 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A5FP-01 2 133542894 133542894 C T NCKAP5 Missense_Mutation p.R497K 0.53 tolerated(0.16) possibly_damaging(0.631) TCGA-EB-A5FP-01 2 135741363 135741363 C T MAP3K19 Silent p.R1035R 0.62 TCGA-EB-A5FP-01 2 136574958 136574958 C T LCT Missense_Mutation p.G554S 0.22 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 2 141816481 141816481 C T LRP1B Missense_Mutation p.R460Q 0.20 benign(0.238) TCGA-EB-A5FP-01 2 152484039 152484039 C T NEB Missense_Mutation p.D3381N 0.26 probably_damaging(1) TCGA-EB-A5FP-01 2 175624067 175624067 G A CHRNA1 Silent p.L76L 0.51 TCGA-EB-A5FP-01 2 179397418 179397418 G A TTN Missense_Mutation p.P34642S 0.30 TCGA-EB-A5FP-01 2 179454435 179454435 C T TTN Missense_Mutation p.E20673K 0.56 TCGA-EB-A5FP-01 2 179494084 179494084 C T TTN Missense_Mutation p.E14790K 0.68 TCGA-EB-A5FP-01 2 179548796 179548796 C T TTN Silent p.P10912P 0.21 TCGA-EB-A5FP-01 2 179566258 179566258 C T TTN Missense_Mutation p.E10199K 0.18 TCGA-EB-A5FP-01 2 179664277 179664277 G A TTN Missense_Mutation p.S284L 0.30 TCGA-EB-A5FP-01 2 196682499 196682499 C T DNAH7 Missense_Mutation p.G3116R 0.25 deleterious(0) probably_damaging(0.996) TCGA-EB-A5FP-01 2 206023536 206023536 C T PARD3B Intron 0.55 TCGA-EB-A5FP-01 2 207171490 207171490 C T ZDBF2 Silent p.S746S 0.26 TCGA-EB-A5FP-01 2 208986540 208986540 C T CRYGD Missense_Mutation p.E128K 0.58 deleterious(0.02) benign(0.32) TCGA-EB-A5FP-01 2 216262558 216262558 G A FN1 Missense_Mutation p.P1121L 0.31 tolerated(0.05) probably_damaging(1) TCGA-EB-A5FP-01 2 218999718 218999718 G A CXCR2 Missense_Mutation p.G65E 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 2 219222367 219222367 G A C2orf62 Missense_Mutation p.E77K 0.19 tolerated(0.07) benign(0.158) TCGA-EB-A5FP-01 2 220039815 220039815 G A CNPPD1 Silent p.S92S 0.13 TCGA-EB-A5FP-01 2 220312840 220312840 C T SPEG Silent p.S320S 0.67 TCGA-EB-A5FP-01 2 228858281 228858281 G A SPHKAP Nonsense_Mutation p.Q1564* 0.48 TCGA-EB-A5FP-01 2 229890265 229890265 C T PID1 3'UTR 0.57 TCGA-EB-A5FP-01 2 233244522 233244522 C T ALPP Missense_Mutation p.P178L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5FP-01 2 238285713 238285713 C T COL6A3 Silent p.Q924Q 0.26 TCGA-EB-A5FP-01 2 27456286 27456286 G A CAD Missense_Mutation p.R1033Q 0.07 deleterious(0.01) possibly_damaging(0.845) TCGA-EB-A5FP-01 2 27805502 27805502 G A C2orf16 3'UTR 0.29 TCGA-EB-A5FP-01 2 27908014 27908014 G A SLC4A1AP Silent p.E662E 0.28 TCGA-EB-A5FP-01 2 30682518 30682518 C T LCLAT1 Missense_Mutation p.P14S 0.17 deleterious_low_confidence(0) benign(0.002) TCGA-EB-A5FP-01 2 32476293 32476293 C T NLRC4 Missense_Mutation p.E214K 0.54 deleterious(0.01) benign(0.134) TCGA-EB-A5FP-01 2 37454865 37454865 T G CEBPZ Missense_Mutation p.N491H 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5FP-01 2 50723127 50723127 C T NRXN1 Missense_Mutation p.D1036N 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A5FP-01 2 54024932 54024932 G A ERLEC1 Missense_Mutation p.E164K 0.51 tolerated(0.21) benign(0.219) TCGA-EB-A5FP-01 2 64139727 64139727 G A VPS54 Nonsense_Mutation p.R831* 0.24 TCGA-EB-A5FP-01 2 74275305 74275305 C T TET3 Missense_Mutation p.P619L 0.40 deleterious(0) benign(0.065) TCGA-EB-A5FP-01 2 74320073 74320073 C T TET3 Silent p.V893V 0.78 TCGA-EB-A5FP-01 2 89292043 89292043 C T IGKV1-8 Missense_Mutation p.G77E 0.24 deleterious(0.01) possibly_damaging(0.537) TCGA-EB-A5FP-01 2 89340012 89340012 G A IGKV1-12 Silent p.S20S 0.30 TCGA-EB-A5FP-01 3 108117498 108117498 G A MYH15 Missense_Mutation p.L1727F 0.44 deleterious(0) probably_damaging(0.979) TCGA-EB-A5FP-01 3 108219053 108219053 G A MYH15 Silent p.V156V 0.41 TCGA-EB-A5FP-01 3 109023367 109023367 G A DPPA2 Missense_Mutation p.S270F 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A5FP-01 3 119133091 119133091 G A ARHGAP31 Missense_Mutation p.G772E 0.12 tolerated(0.26) benign(0.005) TCGA-EB-A5FP-01 3 119301215 119301215 C T ADPRH Missense_Mutation p.L67F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 3 121575880 121575880 C T EAF2 Nonsense_Mutation p.Q121* 0.42 TCGA-EB-A5FP-01 3 122414467 122414467 C T PARP14 Missense_Mutation p.P265S 0.38 deleterious(0.02) possibly_damaging(0.792) TCGA-EB-A5FP-01 3 126726729 126726729 C T PLXNA1 Silent p.F695F 0.35 TCGA-EB-A5FP-01 3 127340026 127340026 C T MCM2 Silent p.A853A 0.50 TCGA-EB-A5FP-01 3 14712409 14712409 C T CCDC174 Missense_Mutation p.S371F 0.49 tolerated(0.32) possibly_damaging(0.831) TCGA-EB-A5FP-01 3 14960269 14960269 C T FGD5 Silent p.R1166R 0.39 TCGA-EB-A5FP-01 3 151017982 151017982 G A GPR87 5'UTR 0.45 TCGA-EB-A5FP-01 3 183681181 183681181 G A ABCC5 Nonsense_Mutation p.Q743* 0.39 TCGA-EB-A5FP-01 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.40 deleterious(0) probably_damaging(0.992) TCGA-EB-A5FP-01 3 195505314 195505314 G A MUC4 Missense_Mutation p.P4268L 0.30 possibly_damaging(0.843) TCGA-EB-A5FP-01 3 32932697 32932697 C T TRIM71 Silent p.I667I 0.47 TCGA-EB-A5FP-01 3 36869822 36869822 C T TRANK1 Missense_Mutation p.G2908S 0.42 tolerated(0.2) benign(0.169) TCGA-EB-A5FP-01 3 36898779 36898779 C T TRANK1 Missense_Mutation p.D768N 0.38 tolerated(0.22) benign(0.001) TCGA-EB-A5FP-01 3 38592772 38592772 G A SCN5A Silent p.F1697F 0.34 TCGA-EB-A5FP-01 3 38738934 38738934 C T SCN10A Missense_Mutation p.R1926K 0.45 tolerated(0.76) benign(0.033) TCGA-EB-A5FP-01 3 44441989 44441989 C T TCAIM Missense_Mutation p.S343F 0.33 deleterious(0.01) benign(0.029) TCGA-EB-A5FP-01 3 46754406 46754406 C T PRSS50 Silent p.R302R 0.48 TCGA-EB-A5FP-01 3 49050929 49050929 T G WDR6 Silent p.G684G 0.51 TCGA-EB-A5FP-01 3 49753020 49753020 C T RNF123 Missense_Mutation p.S1008F 0.32 deleterious(0) possibly_damaging(0.868) TCGA-EB-A5FP-01 3 53326676 53326676 G A DCP1A Missense_Mutation p.P269L 0.24 tolerated(0.47) benign(0.005) TCGA-EB-A5FP-01 3 53810932 53810932 C T CACNA1D Silent p.I1532I 0.45 TCGA-EB-A5FP-01 3 55107860 55107860 G A CACNA2D3 Missense_Mutation p.E1053K 0.33 tolerated(0.19) benign(0.058) TCGA-EB-A5FP-01 3 56114910 56114910 C T ERC2 Missense_Mutation p.E526K 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 3 62189056 62189056 C T PTPRG Silent p.F529F 0.58 TCGA-EB-A5FP-01 3 64587752 64587752 G A ADAMTS9 Silent p.C1295C 0.44 TCGA-EB-A5FP-01 4 100207988 100207988 C T ADH1A Intron 0.38 TCGA-EB-A5FP-01 4 110885621 110885621 A G EGF Silent p.T501T 0.48 TCGA-EB-A5FP-01 4 115997941 115997941 C T NDST4 Silent p.V84V 0.48 TCGA-EB-A5FP-01 4 120116928 120116928 C T RP11-455G16.1 Missense_Mutation p.R81Q 0.38 deleterious_low_confidence(0.04) benign(0.008) TCGA-EB-A5FP-01 4 123317444 123317444 C T ADAD1 Silent p.I212I 0.39 TCGA-EB-A5FP-01 4 147861050 147861050 C T TTC29 5'UTR 0.36 TCGA-EB-A5FP-01 4 156784810 156784810 G A ASIC5 Missense_Mutation p.S46F 0.31 deleterious(0) probably_damaging(0.997) TCGA-EB-A5FP-01 4 158256830 158256830 C T GRIA2 Missense_Mutation p.P425L 0.50 deleterious(0.04) benign(0.418) TCGA-EB-A5FP-01 4 162577523 162577523 C T FSTL5 Missense_Mutation p.R284K 0.38 deleterious(0.01) possibly_damaging(0.504) TCGA-EB-A5FP-01 4 167675755 167675755 C T SPOCK3 Missense_Mutation p.E282K 0.46 deleterious(0) probably_damaging(0.997) TCGA-EB-A5FP-01 4 1824800 1824800 G A LETM1 Missense_Mutation p.A464V 0.42 tolerated(0.31) benign(0.005) TCGA-EB-A5FP-01 4 25784008 25784008 C T SEL1L3 Nonsense_Mutation p.W771* 0.45 TCGA-EB-A5FP-01 4 36126551 36126551 C T ARAP2 Missense_Mutation p.A1227T 0.32 tolerated(0.83) benign(0.008) TCGA-EB-A5FP-01 4 40440485 40440485 G A RBM47 Silent p.L142L 0.35 TCGA-EB-A5FP-01 4 41694399 41694399 G A LIMCH1 Missense_Mutation p.R1075K 0.42 tolerated(0.09) probably_damaging(0.997) TCGA-EB-A5FP-01 4 46930529 46930529 G A GABRA4 Nonsense_Mutation p.R460* 0.47 TCGA-EB-A5FP-01 4 47560197 47560197 G A ATP10D Missense_Mutation p.V781I 0.41 deleterious(0.04) probably_damaging(0.956) TCGA-EB-A5FP-01 4 55127427 55127427 G A PDGFRA Missense_Mutation p.R72K 0.39 tolerated(1) benign(0.034) TCGA-EB-A5FP-01 4 62599156 62599156 C T LPHN3 Missense_Mutation p.S360L 0.61 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A5FP-01 4 68939683 68939683 G A TMPRSS11F Silent p.I109I 0.77 TCGA-EB-A5FP-01 4 75959144 75959144 T C PARM1 Missense_Mutation p.F274S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 4 8021971 8021971 G A ABLIM2 Missense_Mutation p.P443S 0.37 tolerated(0.33) benign(0.002) TCGA-EB-A5FP-01 4 85707250 85707250 G A WDFY3 Missense_Mutation p.S1315L 0.48 tolerated(0.13) benign(0.007) TCGA-EB-A5FP-01 4 87115518 87115518 T C MAPK10 Missense_Mutation p.T13A 0.44 tolerated_low_confidence(0.32) benign(0) TCGA-EB-A5FP-01 4 95508169 95508169 C T PDLIM5 Intron 0.46 TCGA-EB-A5FP-01 5 101599431 101599431 C T SLCO4C1 Missense_Mutation p.G286R 0.85 deleterious(0) probably_damaging(0.952) TCGA-EB-A5FP-01 5 128365303 128365303 T C SLC27A6 Missense_Mutation p.I529T 0.71 tolerated(0.6) benign(0.023) TCGA-EB-A5FP-01 5 131528616 131528616 G A P4HA2 3'UTR 0.83 TCGA-EB-A5FP-01 5 13817768 13817768 G A DNAH5 Missense_Mutation p.P2293S 0.37 possibly_damaging(0.876) TCGA-EB-A5FP-01 5 13841027 13841027 G A DNAH5 Silent p.I1899I 0.26 TCGA-EB-A5FP-01 5 140572699 140572699 C T PCDHB10 Missense_Mutation p.P192S 0.76 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EB-A5FP-01 5 140720927 140720927 C T PCDHGA2 Silent p.L797L 0.82 TCGA-EB-A5FP-01 5 140720928 140720928 T C PCDHGA2 Missense_Mutation p.L797P 0.80 tolerated_low_confidence(0.06) benign(0.046) TCGA-EB-A5FP-01 5 140773736 140773736 C T PCDHGA8 Silent p.F452F 0.75 TCGA-EB-A5FP-01 5 1422089 1422089 C T SLC6A3 Missense_Mutation p.D232N 0.36 tolerated(0.16) benign(0.341) TCGA-EB-A5FP-01 5 14420124 14420124 C T TRIO Missense_Mutation p.H1733Y 0.26 benign(0.002) TCGA-EB-A5FP-01 5 14498697 14498697 C T TRIO Silent p.I2760I 0.43 TCGA-EB-A5FP-01 5 156746815 156746815 G A CYFIP2 Missense_Mutation p.E442K 0.85 deleterious(0) possibly_damaging(0.491) TCGA-EB-A5FP-01 5 176812796 176812796 C T SLC34A1 Silent p.V18V 0.67 TCGA-EB-A5FP-01 5 19571687 19571687 C T CDH18 Splice_Site p.X418_splice 0.49 TCGA-EB-A5FP-01 5 6754886 6754886 C T PAPD7 Missense_Mutation p.S486F 0.47 deleterious_low_confidence(0.01) benign(0.309) TCGA-EB-A5FP-01 6 106553202 106553202 C T PRDM1 Silent p.Y389Y 0.72 TCGA-EB-A5FP-01 6 106969113 106969113 G A AIM1 Missense_Mutation p.D936N 0.81 tolerated(0.72) benign(0.004) TCGA-EB-A5FP-01 6 10924775 10924775 G A SYCP2L Missense_Mutation p.M373I 0.26 tolerated(1) benign(0) TCGA-EB-A5FP-01 6 116580085 116580085 T C TSPYL4 5'Flank 0.39 TCGA-EB-A5FP-01 6 13321193 13321193 G A TBC1D7 Missense_Mutation p.R110C 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A5FP-01 6 136597494 136597494 C T BCLAF1 Missense_Mutation p.G390E 0.24 tolerated(0.92) benign(0.165) TCGA-EB-A5FP-01 6 146350780 146350780 G A GRM1 Missense_Mutation p.G43R 0.79 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 6 158505046 158505046 A G SYNJ2 Silent p.E1016E 0.75 TCGA-EB-A5FP-01 6 26032157 26032157 C T HIST1H3B Silent p.P44P 0.32 TCGA-EB-A5FP-01 6 26107904 26107904 C T HIST1H1T Missense_Mutation p.D140N 0.38 tolerated(0.06) benign(0.014) TCGA-EB-A5FP-01 6 28297448 28297448 C T ZSCAN31 Missense_Mutation p.E5K 0.26 tolerated(0.23) benign(0.102) TCGA-EB-A5FP-01 6 28543030 28543030 G A SCAND3 Silent p.F484F 0.30 TCGA-EB-A5FP-01 6 28966547 28966547 G A ZNF311 Missense_Mutation p.P127S 0.22 tolerated(0.75) benign(0.018) TCGA-EB-A5FP-01 6 29141737 29141737 G A OR2J2 Missense_Mutation p.G109R 0.31 deleterious(0) probably_damaging(0.991) TCGA-EB-A5FP-01 6 29639248 29639248 C T MOG 3'UTR 0.15 TCGA-EB-A5FP-01 6 29692214 29692214 T C HLA-F Missense_Mutation p.L200P 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A5FP-01 6 30131818 30131818 G A TRIM15 Silent p.L119L 0.27 TCGA-EB-A5FP-01 6 31617057 31617057 G A BAG6 Silent p.P114P 0.25 TCGA-EB-A5FP-01 6 31868434 31868434 G A ZBTB12 Silent p.L217L 0.26 TCGA-EB-A5FP-01 6 32008241 32008241 C T CYP21A2 Missense_Mutation p.S333F 0.16 deleterious(0.04) benign(0.111) TCGA-EB-A5FP-01 6 33652666 33652666 G A ITPR3 Silent p.Q1751Q 0.29 TCGA-EB-A5FP-01 6 33652667 33652667 G A ITPR3 Missense_Mutation p.E1752K 0.29 tolerated(0.11) benign(0.441) TCGA-EB-A5FP-01 6 348894 348894 G A DUSP22 Intron 0.10 TCGA-EB-A5FP-01 6 35477051 35477051 C T TULP1 Missense_Mutation p.E253K 0.34 tolerated(0.1) benign(0.121) TCGA-EB-A5FP-01 6 37348955 37348955 C T RNF8 Silent p.F422F 0.24 TCGA-EB-A5FP-01 6 4099316 4099316 G A C6orf201 Silent p.P56P 0.28 TCGA-EB-A5FP-01 6 43316182 43316182 G A ZNF318 Silent p.I984I 0.41 TCGA-EB-A5FP-01 6 44254094 44254094 C T TCTE1 Nonsense_Mutation p.W151* 0.43 TCGA-EB-A5FP-01 6 46856186 46856186 C T GPR116 Missense_Mutation p.E72K 0.34 tolerated(0.4) possibly_damaging(0.717) TCGA-EB-A5FP-01 6 50016328 50016328 C T DEFB112 Missense_Mutation p.E13K 0.33 deleterious(0.02) unknown(0) TCGA-EB-A5FP-01 6 73933460 73933460 C T KHDC1L 3'UTR 0.44 TCGA-EB-A5FP-01 6 74073548 74073548 C T KHDC3L Missense_Mutation p.R207C 0.47 tolerated(0.07) benign(0.34) TCGA-EB-A5FP-01 6 75799970 75799970 C T COL12A1 Missense_Mutation p.D2933N 0.42 probably_damaging(0.995) TCGA-EB-A5FP-01 6 83921611 83921611 C T ME1 3'UTR 0.36 TCGA-EB-A5FP-01 6 89814845 89814845 G A SRSF12 Missense_Mutation p.L137F 0.29 tolerated(0.61) benign(0) TCGA-EB-A5FP-01 6 90312801 90312801 C T ANKRD6 Silent p.I91I 0.20 TCGA-EB-A5FP-01 6 93955066 93955066 G A EPHA7 Silent p.F944F 0.43 TCGA-EB-A5FP-01 7 100246260 100246260 C T ACTL6B Silent p.G196G 0.30 TCGA-EB-A5FP-01 7 100693850 100693850 G A MUC17 Missense_Mutation p.E4270K 0.35 unknown(0) TCGA-EB-A5FP-01 7 102079408 102079408 G A ORAI2 Missense_Mutation p.S2N 0.55 deleterious_low_confidence(0.02) possibly_damaging(0.827) TCGA-EB-A5FP-01 7 126079148 126079148 C T GRM8 3'UTR 0.26 TCGA-EB-A5FP-01 7 126542662 126542662 C T GRM8 Missense_Mutation p.E364K 0.27 deleterious(0.02) benign(0.031) TCGA-EB-A5FP-01 7 12666376 12666376 G A SCIN Silent p.Q383Q 0.43 TCGA-EB-A5FP-01 7 127235596 127235596 C T FSCN3 Missense_Mutation p.S127F 0.52 deleterious(0.01) probably_damaging(0.931) TCGA-EB-A5FP-01 7 134635258 134635258 C T CALD1 Missense_Mutation p.S643F 0.54 deleterious(0.03) probably_damaging(0.983) TCGA-EB-A5FP-01 7 135307611 135307611 T C NUP205 Missense_Mutation p.Y1473H 0.62 deleterious(0) probably_damaging(0.999) TCGA-EB-A5FP-01 7 139706944 139706944 G A TBXAS1 Silent p.V443V 0.34 TCGA-EB-A5FP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.59 deleterious(0) probably_damaging(0.967) TCGA-EB-A5FP-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.59 deleterious(0) possibly_damaging(0.838) TCGA-EB-A5FP-01 7 142008598 142008598 C T TRBV3-1 Missense_Mutation p.S24F 0.61 tolerated(0.12) benign(0.012) TCGA-EB-A5FP-01 7 143140996 143140996 C T TAS2R60 Missense_Mutation p.L151F 0.61 tolerated(0.52) benign(0.002) TCGA-EB-A5FP-01 7 143793049 143793049 C T OR2A12 Silent p.I283I 0.59 TCGA-EB-A5FP-01 7 150269602 150269602 C T GIMAP4 Silent p.F148F 0.21 TCGA-EB-A5FP-01 7 150389748 150389748 C T GIMAP2 Missense_Mutation p.A125V 0.23 tolerated(0.06) benign(0.293) TCGA-EB-A5FP-01 7 150501522 150501522 C T TMEM176A Silent p.L210L 0.59 TCGA-EB-A5FP-01 7 18631235 18631235 C T HDAC9 Missense_Mutation p.S171F 0.52 tolerated(0.29) possibly_damaging(0.617) TCGA-EB-A5FP-01 7 24874229 24874229 G A OSBPL3 Missense_Mutation p.S541F 0.54 deleterious(0) probably_damaging(0.997) TCGA-EB-A5FP-01 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.61 TCGA-EB-A5FP-01 7 37780115 37780115 C T GPR141 Silent p.F40F 0.57 TCGA-EB-A5FP-01 7 44189567 44189567 C T GCK Splice_Site p.X194_splice 0.60 TCGA-EB-A5FP-01 7 44805773 44805773 C T ZMIZ2 Silent p.F751F 0.34 TCGA-EB-A5FP-01 7 47849166 47849166 G A PKD1L1 Silent p.L2531L 0.61 TCGA-EB-A5FP-01 7 54617709 54617709 C T VSTM2A Silent p.F160F 0.31 TCGA-EB-A5FP-01 7 6797468 6797468 G A RSPH10B2 Missense_Mutation p.E54K 0.31 tolerated(0.05) benign(0.336) TCGA-EB-A5FP-01 7 73009966 73009966 C T MLXIPL Splice_Site p.X770_splice 0.64 TCGA-EB-A5FP-01 8 103564169 103564169 C T ODF1 Missense_Mutation p.P72S 0.58 tolerated_low_confidence(0.1) benign(0.098) TCGA-EB-A5FP-01 8 105261746 105261746 G A RIMS2 Silent p.K1207K 0.51 TCGA-EB-A5FP-01 8 124988215 124988215 G A FER1L6 Missense_Mutation p.G254E 0.23 deleterious(0.01) possibly_damaging(0.818) TCGA-EB-A5FP-01 8 131859746 131859746 A T ADCY8 Missense_Mutation p.F809Y 0.39 tolerated(0.75) benign(0.002) TCGA-EB-A5FP-01 8 134144186 134144186 T C TG Missense_Mutation p.S2665P 0.24 deleterious(0) probably_damaging(0.944) TCGA-EB-A5FP-01 8 135649738 135649738 G A ZFAT Silent p.I138I 0.39 TCGA-EB-A5FP-01 8 15967562 15967562 G A MSR1 3'UTR 0.50 TCGA-EB-A5FP-01 8 16007814 16007814 G A MSR1 Missense_Mutation p.P302L 0.49 deleterious(0.01) possibly_damaging(0.905) TCGA-EB-A5FP-01 8 24350570 24350570 G A ADAM7 Missense_Mutation p.G557E 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 8 24359078 24359078 C T ADAM7 Missense_Mutation p.H733Y 0.69 deleterious(0.04) benign(0.03) TCGA-EB-A5FP-01 8 27927140 27927140 C T NUGGC Missense_Mutation p.V60I 0.50 tolerated(0.3) benign(0.015) TCGA-EB-A5FP-01 8 37996539 37996539 C T ASH2L Missense_Mutation p.H613Y 0.17 tolerated(0.59) benign(0.438) TCGA-EB-A5FP-01 8 39776353 39776353 C T IDO1 Missense_Mutation p.A108V 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 8 63938771 63938771 A G GGH Silent p.L149L 0.31 TCGA-EB-A5FP-01 8 68170405 68170405 C T ARFGEF1 Missense_Mutation p.E786K 0.36 deleterious(0.01) possibly_damaging(0.884) TCGA-EB-A5FP-01 8 68930098 68930098 G A PREX2 Missense_Mutation p.M53I 0.46 tolerated(1) benign(0.001) TCGA-EB-A5FP-01 8 70585477 70585477 G A SLCO5A1 Missense_Mutation p.S725F 0.23 deleterious(0.04) possibly_damaging(0.673) TCGA-EB-A5FP-01 9 100963902 100963902 G A TBC1D2 Silent p.P772P 0.39 TCGA-EB-A5FP-01 9 108097886 108097886 C T SLC44A1 Silent p.N104N 0.32 TCGA-EB-A5FP-01 9 108456997 108456997 C T TMEM38B Missense_Mutation p.P19L 0.51 tolerated(0.06) benign(0.209) TCGA-EB-A5FP-01 9 123904428 123904428 C T CNTRL Silent p.H917H 0.38 TCGA-EB-A5FP-01 9 125316101 125316101 C T OR1N2 Missense_Mutation p.T218I 0.40 tolerated(0.69) benign(0.004) TCGA-EB-A5FP-01 9 136305625 136305625 C T ADAMTS13 Silent p.L649L 0.24 TCGA-EB-A5FP-01 9 137623401 137623401 G A COL5A1 Silent p.T408T 0.43 TCGA-EB-A5FP-01 9 140622918 140622918 C T EHMT1 Missense_Mutation p.P254S 0.43 tolerated_low_confidence(0.12) benign(0.009) TCGA-EB-A5FP-01 9 19379559 19379559 G A RPS6 Missense_Mutation p.R22C 0.38 tolerated(0.27) benign(0.009) TCGA-EB-A5FP-01 9 19379560 19379560 T A RPS6 Missense_Mutation p.E21D 0.38 tolerated(0.2) benign(0.03) TCGA-EB-A5FP-01 9 32631466 32631466 G A TAF1L Missense_Mutation p.P1371L 0.43 tolerated(0.24) benign(0.199) TCGA-EB-A5FP-01 9 34661534 34661534 C T IL11RA 3'UTR 0.37 TCGA-EB-A5FP-01 9 35752024 35752024 C T RGP1 Silent p.V278V 0.28 TCGA-EB-A5FP-01 9 36105181 36105181 C T RECK Missense_Mutation p.P493S 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5FP-01 9 80932643 80932643 C T PSAT1 Silent p.A264A 0.51 TCGA-EB-A5FP-01 9 8341825 8341825 G A PTPRD Silent p.I1605I 0.43 TCGA-EB-A5FP-01 9 94486956 94486956 G A ROR2 Missense_Mutation p.S607F 0.46 deleterious(0) probably_damaging(0.983) TCGA-EB-A5FP-01 9 99691249 99691249 T C NUTM2G 5'Flank 0.42 TCGA-EB-A5FP-01 X 106171857 106171857 C T CLDN2 Silent p.F133F 0.44 TCGA-EB-A5FP-01 X 106172097 106172097 A G CLDN2 Silent p.Q213Q 0.44 TCGA-EB-A5FP-01 X 112022866 112022866 G A AMOT Missense_Mutation p.S839F 0.41 unknown(0) TCGA-EB-A5FP-01 X 117959966 117959966 G A ZCCHC12 Silent p.P253P 0.40 TCGA-EB-A5FP-01 X 129270669 129270669 G A AIFM1 Silent p.S371S 0.39 TCGA-EB-A5FP-01 X 134481331 134481331 G A ZNF449 Silent p.E96E 0.44 TCGA-EB-A5FP-01 X 134989123 134989123 G A SAGE1 Missense_Mutation p.E259K 0.44 tolerated(0.22) benign(0.244) TCGA-EB-A5FP-01 X 140984736 140984736 G A MAGEC3 Missense_Mutation p.G398S 0.75 tolerated(0.11) benign(0.092) TCGA-EB-A5FP-01 X 150913086 150913086 C G CNGA2 3'UTR 0.56 TCGA-EB-A5FP-01 X 151130975 151130975 C T GABRE Silent p.K161K 0.48 TCGA-EB-A5FP-01 X 153524320 153524320 C T TKTL1 Silent p.I36I 0.33 TCGA-EB-A5FP-01 X 18234782 18234782 C T BEND2 Missense_Mutation p.E33K 0.37 tolerated_low_confidence(0.07) benign(0.011) TCGA-EB-A5FP-01 X 23411506 23411506 C T PTCHD1 Missense_Mutation p.S624L 0.45 tolerated(0.3) benign(0.014) TCGA-EB-A5FP-01 X 24024803 24024803 C T KLHL15 Missense_Mutation p.G3E 0.30 deleterious(0) possibly_damaging(0.466) TCGA-EB-A5FP-01 X 34962583 34962583 G A FAM47B Silent p.R545R 0.42 TCGA-EB-A5FP-01 X 37028482 37028482 C T FAM47C Missense_Mutation p.P667S 0.33 tolerated(0.43) benign(0.006) TCGA-EB-A5FP-01 X 37653049 37653049 C T CYBB Nonsense_Mutation p.R157* 0.46 TCGA-EB-A5FP-01 X 37655208 37655208 C T CYBB Missense_Mutation p.P163L 0.44 deleterious(0.01) benign(0.371) TCGA-EB-A5FP-01 X 49179741 49179741 G A GAGE12J Missense_Mutation p.M23I 0.09 tolerated(0.07) benign(0.01) TCGA-EB-A5FP-01 X 50052395 50052395 G A CCNB3 Missense_Mutation p.G409E 0.50 tolerated(0.85) benign(0.065) TCGA-EB-A5FP-01 X 50085299 50085299 C T CCNB3 Silent p.L1205L 0.52 TCGA-EB-A5FP-01 X 53641589 53641589 C T HUWE1 Missense_Mutation p.E723K 0.42 possibly_damaging(0.761) TCGA-EB-A5FP-01 X 62569906 62569906 C T SPIN4 3'UTR 0.43 TCGA-EB-A5FP-01 X 64722444 64722444 G A ZC3H12B Silent p.Q622Q 0.32 TCGA-EB-A5FP-01 X 69478255 69478255 G A P2RY4 3'UTR 0.40 TCGA-EB-A5FP-01 X 69516874 69516874 G A KIF4A Missense_Mutation p.G88R 0.52 deleterious(0) probably_damaging(1) TCGA-EB-A5FP-01 X 70347230 70347230 C T MED12 Missense_Mutation p.S965F 0.34 possibly_damaging(0.772) TCGA-EB-A5FP-01 X 79277889 79277889 G A TBX22 Missense_Mutation p.G41R 0.39 tolerated(0.57) benign(0.003) TCGA-EB-A5FP-01 X 79698960 79698960 G A FAM46D Missense_Mutation p.E308K 0.41 tolerated(0.05) benign(0.07) TCGA-EB-A5FP-01 X 8565237 8565237 G A KAL1 Silent p.L127L 0.29 TCGA-EB-A5FP-01 X 85994853 85994853 C T DACH2 Missense_Mutation p.P403L 0.38 tolerated(0.11) benign(0.411) TCGA-EB-A5KH-06 10 21101818 21101818 C T NEBL Missense_Mutation p.V800I 0.51 tolerated(0.07) benign(0.034) TCGA-EB-A5KH-06 10 7659195 7659195 C T ITIH5 Missense_Mutation p.A235T 0.33 tolerated(0.09) possibly_damaging(0.461) TCGA-EB-A5KH-06 12 48119208 48119208 G A ENDOU 5'UTR 0.52 TCGA-EB-A5KH-06 12 51857414 51857414 C G SLC4A8 Missense_Mutation p.P422R 0.39 deleterious(0.03) benign(0.062) TCGA-EB-A5KH-06 14 35777206 35777206 C G PSMA6 Missense_Mutation p.A28G 0.44 deleterious(0) probably_damaging(0.952) TCGA-EB-A5KH-06 15 28000615 28000615 C T OCA2 Silent p.L812L 0.73 TCGA-EB-A5KH-06 15 40912859 40912859 C A CASC5 Missense_Mutation p.R159S 0.67 deleterious(0.04) benign(0.008) TCGA-EB-A5KH-06 15 65681244 65681244 G A IGDCC4 Missense_Mutation p.P870L 0.06 tolerated(0.06) probably_damaging(1) TCGA-EB-A5KH-06 15 73541507 73541507 T A NEO1 Missense_Mutation p.N571K 0.40 tolerated(0.36) possibly_damaging(0.558) TCGA-EB-A5KH-06 16 15133876 15133876 G A NTAN1 Missense_Mutation p.R197W 0.40 deleterious(0) probably_damaging(0.956) TCGA-EB-A5KH-06 17 18023161 18023161 C T MYO15A Silent p.Y349Y 0.50 TCGA-EB-A5KH-06 17 3324275 3324275 C A OR3A3 Silent p.P138P 0.10 TCGA-EB-A5KH-06 17 40818881 40818881 C A TUBG2 3'UTR 0.20 TCGA-EB-A5KH-06 17 55194271 55194271 G A AKAP1 Missense_Mutation p.S828N 0.53 tolerated(1) benign(0.023) TCGA-EB-A5KH-06 17 7623091 7623091 C G DNAH2 Silent p.G13G 0.48 TCGA-EB-A5KH-06 19 14520732 14520732 G T DDX39A Intron 0.44 TCGA-EB-A5KH-06 19 36369552 36369552 G A APLP1 Missense_Mutation p.R549Q 0.44 tolerated(0.55) benign(0.001) TCGA-EB-A5KH-06 19 39926579 39926579 A C RPS16 5'UTR 0.47 TCGA-EB-A5KH-06 19 53913899 53913899 G C ZNF765 3'UTR 0.55 TCGA-EB-A5KH-06 19 6697540 6697540 C T C3 Missense_Mutation p.A871T 0.40 tolerated(0.21) benign(0.032) TCGA-EB-A5KH-06 1 12907886 12907886 G A HNRNPCL1 Missense_Mutation p.A86V 0.10 tolerated(0.11) benign(0.082) TCGA-EB-A5KH-06 1 144220808 144220808 T G NBPF8 Missense_Mutation p.D3576E 0.14 benign(0.005) TCGA-EB-A5KH-06 1 59126880 59126880 T C MYSM1 Missense_Mutation p.I764V 0.61 deleterious(0.04) benign(0.103) TCGA-EB-A5KH-06 22 19125792 19125792 C G DGCR14 Silent p.L287L 0.10 TCGA-EB-A5KH-06 22 21800912 21800912 C G HIC2 Silent p.L576L 0.10 TCGA-EB-A5KH-06 22 21800996 21800996 C A HIC2 Silent p.L604L 0.09 TCGA-EB-A5KH-06 22 21801022 21801022 C A HIC2 Missense_Mutation p.S613Y 0.08 deleterious(0) possibly_damaging(0.831) TCGA-EB-A5KH-06 22 30857300 30857300 C T SEC14L3 Missense_Mutation p.V360I 0.16 tolerated(0.43) possibly_damaging(0.796) TCGA-EB-A5KH-06 22 35659074 35659074 G A HMGXB4 Missense_Mutation p.C12Y 0.27 tolerated_low_confidence(0.18) benign(0.312) TCGA-EB-A5KH-06 22 38823853 38823853 C T KCNJ4 Silent p.A95A 0.29 TCGA-EB-A5KH-06 2 128366325 128366325 G A MYO7B Missense_Mutation p.A896T 0.42 tolerated(0.42) benign(0.007) TCGA-EB-A5KH-06 2 16085650 16085650 G T MYCN Nonsense_Mutation p.E276* 0.46 TCGA-EB-A5KH-06 2 209106743 209106743 G A IDH1 Silent p.D275D 0.43 TCGA-EB-A5KH-06 2 219029815 219029815 A C CXCR1 Nonsense_Mutation p.Y40* 0.38 TCGA-EB-A5KH-06 3 139065880 139065880 G A MRPS22 Silent p.L111L 0.26 TCGA-EB-A5KH-06 3 141011797 141011797 G A ACPL2 Missense_Mutation p.R398K 0.13 tolerated(0.28) possibly_damaging(0.773) TCGA-EB-A5KH-06 3 38835308 38835308 T G SCN10A Missense_Mutation p.K65T 0.13 tolerated(0.63) benign(0.011) TCGA-EB-A5KH-06 3 49294652 49294652 G T CCDC36 Missense_Mutation p.K574N 0.89 deleterious(0.05) benign(0.273) TCGA-EB-A5KH-06 4 153896923 153896924 - C FHDC1 Frame_Shift_Ins p.G830Wfs*11 0.40 TCGA-EB-A5KH-06 4 39739109 39739109 G A UBE2K Missense_Mutation p.G45R 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A5KH-06 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.69 deleterious(0) probably_damaging(1) TCGA-EB-A5KH-06 4 78527014 78527014 G A CXCL13 5'UTR 0.31 TCGA-EB-A5KH-06 5 112154666 112154666 G A APC Missense_Mutation p.E313K 0.14 probably_damaging(0.985) TCGA-EB-A5KH-06 5 1201755 1201755 C T SLC6A19 5'UTR 0.17 TCGA-EB-A5KH-06 5 55088573 55088573 G A DDX4 Missense_Mutation p.M469I 0.36 deleterious(0.01) possibly_damaging(0.786) TCGA-EB-A5KH-06 6 44227996 44227996 C T NFKBIE Silent p.A407A 0.37 TCGA-EB-A5KH-06 6 47254252 47254252 C T TNFRSF21 Missense_Mutation p.R59H 0.19 tolerated(0.22) benign(0.005) TCGA-EB-A5KH-06 7 143701507 143701507 C T OR6B1 Missense_Mutation p.L140F 0.34 tolerated(0.22) benign(0.133) TCGA-EB-A5KH-06 7 23808761 23808761 C T STK31 Missense_Mutation p.R522C 0.65 tolerated(0.16) benign(0.002) TCGA-EB-A5KH-06 8 110984699 110984699 C T KCNV1 Missense_Mutation p.R260H 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A5KH-06 8 11994707 11994707 G C USP17L2 Missense_Mutation p.H521Q 0.25 tolerated(0.59) benign(0.005) TCGA-EB-A5KH-06 8 144406680 144406680 A G TOP1MT Missense_Mutation p.M264T 0.23 tolerated(0.08) benign(0.381) TCGA-EB-A5KH-06 8 82630420 82630420 A T ZFAND1 Missense_Mutation p.F32Y 0.64 deleterious(0.03) benign(0.439) TCGA-EB-A5KH-06 9 116303599 116303599 G T RGS3 Intron 0.49 TCGA-EB-A5KH-06 X 36163042 36163042 G T CHDC2 3'UTR 1.00 TCGA-EB-A5SE-01 10 106960899 106960899 G A SORCS3 Missense_Mutation p.E717K 0.86 tolerated(0.09) benign(0.165) TCGA-EB-A5SE-01 10 115337882 115337882 C T HABP2 Silent p.F182F 0.89 TCGA-EB-A5SE-01 10 23611456 23611456 G A C10orf67 Missense_Mutation p.S114F 0.92 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A5SE-01 10 25755615 25755615 G A GPR158 Silent p.T457T 0.74 TCGA-EB-A5SE-01 10 35842087 35842087 C T CCNY Silent p.I240I 0.63 TCGA-EB-A5SE-01 10 49409343 49409343 G A FRMPD2 Silent p.L628L 0.87 TCGA-EB-A5SE-01 10 5014828 5014828 G A AKR1C1 Missense_Mutation p.A245T 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5SE-01 10 50870760 50870760 G A CHAT Missense_Mutation p.E637K 0.86 tolerated(0.15) benign(0.378) TCGA-EB-A5SE-01 10 63212599 63212599 G A TMEM26 Intron 0.80 TCGA-EB-A5SE-01 10 69881796 69881796 G A MYPN Missense_Mutation p.D201N 0.78 tolerated(0.51) benign(0.001) TCGA-EB-A5SE-01 10 70450888 70450888 C T TET1 Missense_Mutation p.L1910F 0.83 tolerated(0.09) probably_damaging(0.954) TCGA-EB-A5SE-01 10 98823975 98823975 G A SLIT1 Silent p.I193I 0.86 TCGA-EB-A5SE-01 11 10603436 10603436 C T MRVI1 Missense_Mutation p.E780K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5SE-01 11 113697977 113697977 G A USP28 Missense_Mutation p.P389S 0.40 tolerated(0.06) probably_damaging(0.919) TCGA-EB-A5SE-01 11 11398885 11398885 C T GALNT18 Missense_Mutation p.R274Q 0.44 tolerated(0.34) benign(0.331) TCGA-EB-A5SE-01 11 118498881 118498881 C T PHLDB1 Missense_Mutation p.R448W 0.38 deleterious(0) possibly_damaging(0.816) TCGA-EB-A5SE-01 11 11964207 11964207 C T USP47 Missense_Mutation p.T812I 0.32 deleterious(0.05) benign(0.143) TCGA-EB-A5SE-01 11 12380020 12380020 G A MICALCL Silent p.R694R 0.51 TCGA-EB-A5SE-01 11 1269218 1269218 C T MUC5B Missense_Mutation p.T3703I 0.46 unknown(0) TCGA-EB-A5SE-01 11 130278836 130278836 C T ADAMTS8 Splice_Site p.X584_splice 0.38 TCGA-EB-A5SE-01 11 18232101 18232101 G A RP11-113D6.10 3'UTR 0.29 TCGA-EB-A5SE-01 11 34474670 34474670 C T CAT Missense_Mutation p.P172S 0.54 deleterious(0.01) possibly_damaging(0.873) TCGA-EB-A5SE-01 11 35211490 35211490 C T CD44 Missense_Mutation p.S182F 0.33 deleterious(0.02) benign(0.111) TCGA-EB-A5SE-01 11 3688687 3688687 G A CHRNA10 Missense_Mutation p.P224S 0.32 tolerated(0.12) probably_damaging(0.98) TCGA-EB-A5SE-01 11 3688688 3688688 G A CHRNA10 Silent p.Y223Y 0.32 TCGA-EB-A5SE-01 11 3741981 3741981 C T NUP98 Missense_Mutation p.G741R 0.37 deleterious(0) benign(0.432) TCGA-EB-A5SE-01 11 40136073 40136073 G A LRRC4C Silent p.I590I 0.42 TCGA-EB-A5SE-01 11 44640763 44640763 C T CD82 3'UTR 0.61 TCGA-EB-A5SE-01 11 4471266 4471266 C T OR52K2 Nonsense_Mutation p.Q233* 0.47 TCGA-EB-A5SE-01 11 4566790 4566790 C T OR52M1 Missense_Mutation p.R124C 0.39 deleterious(0.01) benign(0.066) TCGA-EB-A5SE-01 11 45672382 45672382 A T CHST1 Missense_Mutation p.F31Y 0.31 tolerated(0.52) benign(0.332) TCGA-EB-A5SE-01 11 55032387 55032387 C T TRIM48 Missense_Mutation p.S19F 0.49 tolerated(0.06) possibly_damaging(0.568) TCGA-EB-A5SE-01 11 56057994 56057994 G A OR8H1 Missense_Mutation p.P182L 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-EB-A5SE-01 11 56086282 56086282 C T OR8K3 Missense_Mutation p.S167F 0.44 deleterious_low_confidence(0.03) benign(0.307) TCGA-EB-A5SE-01 11 57182141 57182141 C T SLC43A3 Missense_Mutation p.G336D 0.40 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SE-01 11 58275104 58275104 C T OR5B21 Missense_Mutation p.A159T 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-EB-A5SE-01 11 5863101 5863101 G A OR52E6 Silent p.F9F 0.41 TCGA-EB-A5SE-01 11 58660160 58660160 G A GLYATL1P2 RNA 0.37 TCGA-EB-A5SE-01 11 61290703 61290703 C T SYT7 Silent p.V392V 0.42 TCGA-EB-A5SE-01 11 62298168 62298168 G A AHNAK Missense_Mutation p.P1241S 0.38 possibly_damaging(0.55) TCGA-EB-A5SE-01 11 62751472 62751472 G A SLC22A6 Silent p.S139S 0.52 TCGA-EB-A5SE-01 11 65561697 65561697 G A OVOL1 Missense_Mutation p.G99D 0.47 tolerated(0.26) benign(0.033) TCGA-EB-A5SE-01 11 65732014 65732014 C T SART1 Missense_Mutation p.P134S 0.41 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SE-01 11 66063092 66063092 G A TMEM151A Missense_Mutation p.G459S 0.47 tolerated(0.2) benign(0.061) TCGA-EB-A5SE-01 11 70009453 70009453 G A ANO1 Intron 0.56 TCGA-EB-A5SE-01 11 73686708 73686708 G A UCP2 Missense_Mutation p.P215S 0.43 tolerated(0.12) benign(0.261) TCGA-EB-A5SE-01 11 92592355 92592355 G A FAT3 Missense_Mutation p.G3842E 0.27 probably_damaging(1) TCGA-EB-A5SE-01 11 93836183 93836183 G A HEPHL1 Silent p.V893V 0.44 TCGA-EB-A5SE-01 12 104645310 104645310 G A TXNRD1 Missense_Mutation p.D33N 0.29 tolerated_low_confidence(0.41) benign(0.008) TCGA-EB-A5SE-01 12 106897900 106897900 T C POLR3B Missense_Mutation p.L1047P 0.35 deleterious(0) probably_damaging(0.994) TCGA-EB-A5SE-01 12 112676911 112676911 G A HECTD4 Silent p.A1599A 0.45 TCGA-EB-A5SE-01 12 113425079 113425079 C T OAS2 Silent p.I138I 0.46 TCGA-EB-A5SE-01 12 117768973 117768973 G A NOS1 5'Flank 0.44 TCGA-EB-A5SE-01 12 120634627 120634627 C T RPLP0 Silent p.K301K 0.45 TCGA-EB-A5SE-01 12 121437400 121437400 C T HNF1A Missense_Mutation p.P580S 0.28 tolerated_low_confidence(0.28) benign(0.003) TCGA-EB-A5SE-01 12 132471144 132471144 C T EP400 Missense_Mutation p.P672L 0.42 unknown(0) TCGA-EB-A5SE-01 12 133252035 133252035 T C POLE Missense_Mutation p.D392G 0.44 tolerated(0.13) benign(0.345) TCGA-EB-A5SE-01 12 13716776 13716776 G A GRIN2B Silent p.F1132F 0.49 TCGA-EB-A5SE-01 12 1963158 1963158 G A CACNA2D4 Silent p.P735P 0.35 TCGA-EB-A5SE-01 12 24736484 24736484 G A LINC00477 RNA 0.50 TCGA-EB-A5SE-01 12 49308219 49308219 G A CCDC65 Silent p.E111E 0.39 TCGA-EB-A5SE-01 12 52788920 52788920 G A KRT82 Missense_Mutation p.L461F 0.55 tolerated(0.32) possibly_damaging(0.726) TCGA-EB-A5SE-01 12 54686621 54686621 C T NFE2 Missense_Mutation p.G220E 0.35 tolerated(0.19) possibly_damaging(0.734) TCGA-EB-A5SE-01 12 57849580 57849580 G A INHBE Silent p.G87G 0.42 TCGA-EB-A5SE-01 12 58196065 58196065 G T AVIL Missense_Mutation p.Q677K 0.50 deleterious(0.02) benign(0.027) TCGA-EB-A5SE-01 12 6675298 6675298 G A NOP2 Missense_Mutation p.S148F 0.38 deleterious(0) possibly_damaging(0.704) TCGA-EB-A5SE-01 12 68707496 68707496 G A MDM1 Missense_Mutation p.L513F 0.47 deleterious(0) probably_damaging(0.983) TCGA-EB-A5SE-01 12 70065275 70065275 G A BEST3 Missense_Mutation p.P345S 0.36 deleterious(0) benign(0.358) TCGA-EB-A5SE-01 12 7636240 7636240 G A CD163 Silent p.S937S 0.40 TCGA-EB-A5SE-01 12 80732954 80732954 C T OTOGL Silent p.L1645L 0.45 TCGA-EB-A5SE-01 12 97157951 97157951 C T C12orf55 Missense_Mutation p.S2688F 0.23 deleterious(0.01) benign(0.004) TCGA-EB-A5SE-01 13 101844394 101844394 G A NALCN Silent p.S546S 0.52 TCGA-EB-A5SE-01 13 28841264 28841264 T C PAN3 Silent p.L536L 0.41 TCGA-EB-A5SE-01 13 39263570 39263570 G A FREM2 Missense_Mutation p.D697N 0.44 deleterious(0) benign(0.044) TCGA-EB-A5SE-01 13 73335837 73335837 G A DIS3 Missense_Mutation p.R820W 0.06 deleterious(0) benign(0.066) TCGA-EB-A5SE-01 13 94482746 94482746 C T GPC6 Missense_Mutation p.T220I 0.44 deleterious(0) benign(0.42) TCGA-EB-A5SE-01 13 99554154 99554154 C A DOCK9 Nonsense_Mutation p.G461* 0.20 TCGA-EB-A5SE-01 13 99896856 99896856 G C UBAC2 Missense_Mutation p.A123P 0.32 tolerated(0.15) benign(0.011) TCGA-EB-A5SE-01 14 104570712 104570712 C T ASPG Silent p.T275T 0.38 TCGA-EB-A5SE-01 14 105415094 105415094 G A AHNAK2 Missense_Mutation p.L2232F 0.45 benign(0.43) TCGA-EB-A5SE-01 14 105929534 105929534 C T MTA1 Missense_Mutation p.S319L 0.45 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SE-01 14 106733339 106733339 G A IGHV1-24 Silent p.S52S 0.25 TCGA-EB-A5SE-01 14 19574276 19574276 G A POTEG Missense_Mutation p.G445R 0.12 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SE-01 14 21862493 21862493 G A CHD8 Missense_Mutation p.H1848Y 0.46 tolerated(1) benign(0.295) TCGA-EB-A5SE-01 14 55881090 55881090 G A TBPL2 3'UTR 0.41 TCGA-EB-A5SE-01 14 72152207 72152207 C T SIPA1L1 Missense_Mutation p.S1078L 0.44 tolerated(0.18) benign(0) TCGA-EB-A5SE-01 14 76446913 76446913 G A TGFB3 Silent p.F108F 0.45 TCGA-EB-A5SE-01 14 79181271 79181271 C T NRXN3 Silent p.I238I 0.43 TCGA-EB-A5SE-01 14 99865013 99865013 G A SETD3 3'UTR 0.42 TCGA-EB-A5SE-01 15 20645810 20645810 G A HERC2P3 RNA 0.21 TCGA-EB-A5SE-01 15 42041375 42041375 C T MGA Missense_Mutation p.S1857L 0.43 tolerated(0.13) probably_damaging(0.997) TCGA-EB-A5SE-01 15 42742899 42742899 G A ZNF106 Missense_Mutation p.P501L 0.42 deleterious(0.01) benign(0.021) TCGA-EB-A5SE-01 15 44065237 44065237 T C ELL3 3'UTR 0.29 TCGA-EB-A5SE-01 15 45656192 45656192 G A GATM Silent p.S355S 0.37 TCGA-EB-A5SE-01 15 52404609 52404609 C T BCL2L10 Silent p.G105G 0.42 TCGA-EB-A5SE-01 15 72690700 72690700 C T TMEM202 Silent p.F11F 0.32 TCGA-EB-A5SE-01 15 75047479 75047479 G A CYP1A2 3'UTR 0.44 TCGA-EB-A5SE-01 15 77407528 77407528 G A PEAK1 Missense_Mutation p.P1404L 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5SE-01 15 89182577 89182577 C T ISG20 5'UTR 0.36 TCGA-EB-A5SE-01 16 1536420 1536420 C T PTX4 Silent p.E314E 0.46 TCGA-EB-A5SE-01 16 19547953 19547953 C T CCP110 Missense_Mutation p.S321L 0.52 deleterious(0.02) benign(0.125) TCGA-EB-A5SE-01 16 21213056 21213056 G A ZP2 Missense_Mutation p.P492L 0.42 deleterious(0.05) benign(0.072) TCGA-EB-A5SE-01 16 28331906 28331906 C T SBK1 Silent p.L313L 0.70 TCGA-EB-A5SE-01 16 3190713 3190713 G A ZNF213 Missense_Mutation p.E249K 0.29 tolerated(0.31) benign(0.002) TCGA-EB-A5SE-01 16 50349480 50349480 G A BRD7 3'Flank 0.37 TCGA-EB-A5SE-01 16 51174664 51174664 C T SALL1 Missense_Mutation p.G490E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SE-01 16 67233170 67233170 A G ELMO3 Missense_Mutation p.T34A 0.58 tolerated_low_confidence(0.37) benign(0) TCGA-EB-A5SE-01 16 70698939 70698939 C T FLJ00418 Missense_Mutation p.S83F 0.52 unknown(0) TCGA-EB-A5SE-01 16 70698940 70698940 C T FLJ00418 Silent p.S83S 0.46 TCGA-EB-A5SE-01 16 74487084 74487084 C T GLG1 Missense_Mutation p.R1174Q 0.41 tolerated(0.24) benign(0.024) TCGA-EB-A5SE-01 17 10428920 10428920 C T MYH2 Nonsense_Mutation p.W1462* 0.43 TCGA-EB-A5SE-01 17 10430364 10430364 G A MYH2 Missense_Mutation p.S1294L 0.63 tolerated(0.19) benign(0.185) TCGA-EB-A5SE-01 17 10534974 10534974 C T MYH3 Missense_Mutation p.R1747K 0.29 deleterious(0.03) benign(0) TCGA-EB-A5SE-01 17 14110524 14110524 C T COX10 Silent p.P442P 0.37 TCGA-EB-A5SE-01 17 1538237 1538237 C T SCARF1 Missense_Mutation p.A770T 0.55 tolerated(0.13) benign(0.101) TCGA-EB-A5SE-01 17 17701056 17701056 C T RAI1 Silent p.F1598F 0.44 TCGA-EB-A5SE-01 17 18062612 18062612 C T MYO15A Silent p.I3060I 0.41 TCGA-EB-A5SE-01 17 2323331 2323331 C T METTL16 Missense_Mutation p.R541K 0.05 tolerated_low_confidence(0.66) benign(0.023) TCGA-EB-A5SE-01 17 27421956 27421956 C T MYO18A Missense_Mutation p.E1503K 0.46 tolerated(0.22) possibly_damaging(0.803) TCGA-EB-A5SE-01 17 27889630 27889630 G A ABHD15 Silent p.S452S 0.35 TCGA-EB-A5SE-01 17 27889631 27889631 G A ABHD15 Missense_Mutation p.S452F 0.36 tolerated(0.11) benign(0.252) TCGA-EB-A5SE-01 17 3118921 3118921 G A OR1A1 Missense_Mutation p.E3K 0.24 tolerated(0.92) benign(0.003) TCGA-EB-A5SE-01 17 38251709 38251709 C T NR1D1 Silent p.K412K 0.38 TCGA-EB-A5SE-01 17 3984759 3984759 G A ZZEF1 Missense_Mutation p.L914F 0.51 deleterious(0.04) probably_damaging(0.964) TCGA-EB-A5SE-01 17 39871808 39871808 G A GAST Silent p.R40R 0.38 TCGA-EB-A5SE-01 17 40939505 40939505 G A WNK4 Silent p.E562E 0.48 TCGA-EB-A5SE-01 17 41019620 41019620 C T AOC4P RNA 0.40 TCGA-EB-A5SE-01 17 43333087 43333087 G A SPATA32 Silent p.S154S 0.41 TCGA-EB-A5SE-01 17 4576330 4576330 G A PELP1 Silent p.P652P 0.44 TCGA-EB-A5SE-01 17 4623873 4623873 C T ARRB2 Intron 0.60 TCGA-EB-A5SE-01 17 46669719 46669719 C T HOXB5 Missense_Mutation p.R221Q 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 17 4686149 4686149 G A TM4SF5 Silent p.A132A 0.28 TCGA-EB-A5SE-01 17 48193070 48193070 G A SAMD14 Missense_Mutation p.S227F 0.44 deleterious(0.02) possibly_damaging(0.807) TCGA-EB-A5SE-01 17 56573474 56573474 G A MTMR4 Missense_Mutation p.P677S 0.49 tolerated_low_confidence(0.84) benign(0.001) TCGA-EB-A5SE-01 17 58235475 58235475 T C CA4 Silent p.N189N 0.51 TCGA-EB-A5SE-01 17 64684512 64684512 C T PRKCA Missense_Mutation p.S260F 0.38 deleterious(0.04) probably_damaging(0.95) TCGA-EB-A5SE-01 17 74078483 74078483 C T EXOC7 3'UTR 0.30 TCGA-EB-A5SE-01 17 77082330 77082330 C T ENGASE Missense_Mutation p.R711C 0.36 tolerated(0.33) benign(0) TCGA-EB-A5SE-01 17 77768504 77768504 G A CBX8 Missense_Mutation p.T367I 0.46 deleterious(0) possibly_damaging(0.507) TCGA-EB-A5SE-01 17 7950260 7950260 G A ALOX15B Silent p.L441L 0.56 TCGA-EB-A5SE-01 17 8701726 8701726 G A MFSD6L Missense_Mutation p.S238F 0.50 tolerated(0.09) benign(0.063) TCGA-EB-A5SE-01 18 19780794 19780794 C T GATA6 3'UTR 0.56 TCGA-EB-A5SE-01 18 28588421 28588421 C T DSC3 Missense_Mutation p.R445K 0.30 tolerated(0.98) benign(0.038) TCGA-EB-A5SE-01 18 47398540 47398540 C T MYO5B Silent p.L1200L 0.43 TCGA-EB-A5SE-01 18 52265196 52265196 C T DYNAP Silent p.S151S 0.37 TCGA-EB-A5SE-01 18 55027393 55027393 G A ST8SIA3 Missense_Mutation p.G343E 0.36 possibly_damaging(0.902) TCGA-EB-A5SE-01 18 56165323 56165323 C T ALPK2 Missense_Mutation p.G2085E 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 18 61233923 61233923 C T SERPINB12 Silent p.F299F 0.43 TCGA-EB-A5SE-01 19 1235998 1235998 G A C19orf26 Silent p.P34P 0.47 TCGA-EB-A5SE-01 19 12502142 12502142 C T ZNF799 Missense_Mutation p.R357K 0.36 tolerated(0.2) benign(0.197) TCGA-EB-A5SE-01 19 12984532 12984532 C T MAST1 Silent p.L1187L 0.46 TCGA-EB-A5SE-01 19 14159865 14159865 C T IL27RA Missense_Mutation p.S405F 0.32 deleterious(0) benign(0.3) TCGA-EB-A5SE-01 19 16008252 16008252 C T CYP4F2 Missense_Mutation p.R57Q 0.43 tolerated(0.14) benign(0.013) TCGA-EB-A5SE-01 19 16275656 16275656 C T CIB3 Missense_Mutation p.G139R 0.29 tolerated(0.24) benign(0.16) TCGA-EB-A5SE-01 19 17654439 17654439 A G FAM129C Missense_Mutation p.K549R 0.31 tolerated(0.57) benign(0.245) TCGA-EB-A5SE-01 19 19339370 19339370 G A NCAN Missense_Mutation p.E981K 0.46 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A5SE-01 19 22952108 22952108 C T ZNF99 Missense_Mutation p.D8N 0.41 deleterious(0) probably_damaging(0.99) TCGA-EB-A5SE-01 19 33321443 33321443 C T SLC7A9 3'UTR 0.42 TCGA-EB-A5SE-01 19 34263251 34263251 G A CHST8 Silent p.V186V 0.45 TCGA-EB-A5SE-01 19 35231525 35231525 C G ZNF181 Nonsense_Mutation p.S80* 0.33 TCGA-EB-A5SE-01 19 35231795 35231795 T G ZNF181 Missense_Mutation p.L170R 0.34 deleterious(0.05) benign(0.241) TCGA-EB-A5SE-01 19 36259305 36259305 G T C19orf55 Splice_Site 0.32 TCGA-EB-A5SE-01 19 36940769 36940769 C T ZNF566 Missense_Mutation p.E124K 0.47 tolerated(0.33) benign(0.008) TCGA-EB-A5SE-01 19 37203746 37203746 C T ZNF567 Missense_Mutation p.S36L 0.24 tolerated(0.25) possibly_damaging(0.613) TCGA-EB-A5SE-01 19 38023375 38023375 G A ZNF793 Missense_Mutation p.V45I 0.30 tolerated(0.48) benign(0.07) TCGA-EB-A5SE-01 19 42753108 42753108 G A ERF Missense_Mutation p.R386C 0.17 deleterious(0) probably_damaging(0.935) TCGA-EB-A5SE-01 19 43257510 43257510 A T PSG8 3'Flank 0.62 TCGA-EB-A5SE-01 19 43697511 43697511 G A PSG4 3'UTR 0.25 TCGA-EB-A5SE-01 19 44056203 44056203 G A XRCC1 Missense_Mutation p.R350W 0.38 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SE-01 19 46215527 46215527 G A FBXO46 Silent p.F409F 0.41 TCGA-EB-A5SE-01 19 48378023 48378023 G C SULT2A1 Missense_Mutation p.N212K 0.89 deleterious(0.02) possibly_damaging(0.575) TCGA-EB-A5SE-01 19 54756804 54756804 G A LILRB5 Silent p.F468F 0.86 TCGA-EB-A5SE-01 19 55692991 55692991 G A PTPRH 3'UTR 0.84 TCGA-EB-A5SE-01 19 56732824 56732824 T A ZSCAN5A 3'UTR 0.93 TCGA-EB-A5SE-01 19 757739 757739 C T MISP Missense_Mutation p.P265S 0.39 tolerated(0.26) benign(0.441) TCGA-EB-A5SE-01 19 9056557 9056557 C T MUC16 Missense_Mutation p.A10297T 0.34 benign(0.092) TCGA-EB-A5SE-01 19 9058359 9058359 C T MUC16 Missense_Mutation p.G9696E 0.40 unknown(0) TCGA-EB-A5SE-01 1 110260076 110260076 G A GSTM5 3'UTR 0.49 TCGA-EB-A5SE-01 1 111494584 111494584 T C LRIF1 Missense_Mutation p.K308E 0.62 deleterious(0) possibly_damaging(0.801) TCGA-EB-A5SE-01 1 1460671 1460671 C A ATAD3A Silent p.T470T 0.42 TCGA-EB-A5SE-01 1 152326774 152326774 G A FLG2 Missense_Mutation p.S1163L 0.62 unknown(0) TCGA-EB-A5SE-01 1 155156314 155156314 C T TRIM46 Missense_Mutation p.A643V 0.52 tolerated(0.08) benign(0.367) TCGA-EB-A5SE-01 1 156347822 156347822 C T RHBG Missense_Mutation p.S139F 0.50 deleterious(0) probably_damaging(0.975) TCGA-EB-A5SE-01 1 159410169 159410169 C T OR10J1 Silent p.I207I 0.27 TCGA-EB-A5SE-01 1 169495230 169495230 C T F5 Silent p.K1875K 0.23 TCGA-EB-A5SE-01 1 169677859 169677859 G A SELL Silent p.C70C 0.57 TCGA-EB-A5SE-01 1 17331559 17331559 G A ATP13A2 Silent p.S99S 0.53 TCGA-EB-A5SE-01 1 174200446 174200446 C T RABGAP1L Silent p.P165P 0.24 TCGA-EB-A5SE-01 1 176526136 176526136 C T PAPPA2 Silent p.S226S 0.62 TCGA-EB-A5SE-01 1 181727100 181727100 C T CACNA1E Silent p.F1449F 0.58 TCGA-EB-A5SE-01 1 183869323 183869323 C T RGL1 Silent p.L459L 0.60 TCGA-EB-A5SE-01 1 18809934 18809934 C T KLHDC7A 3'UTR 0.33 TCGA-EB-A5SE-01 1 19611602 19611602 A T AKR7A3 Missense_Mutation p.Y172N 0.48 deleterious(0) probably_damaging(0.986) TCGA-EB-A5SE-01 1 19611603 19611603 C T AKR7A3 Missense_Mutation p.M171I 0.47 tolerated(0.28) benign(0.17) TCGA-EB-A5SE-01 1 201868835 201868835 C G LMOD1 Missense_Mutation p.E436Q 0.71 probably_damaging(0.997) TCGA-EB-A5SE-01 1 201970534 201970534 C T RNPEP Missense_Mutation p.T412I 0.18 tolerated(0.51) benign(0.167) TCGA-EB-A5SE-01 1 202123317 202123317 C T PTPN7 Silent p.K306K 0.61 TCGA-EB-A5SE-01 1 204115774 204115774 G A ETNK2 Missense_Mutation p.P213S 0.29 tolerated(0.19) benign(0.024) TCGA-EB-A5SE-01 1 205031573 205031573 G A CNTN2 Silent p.R372R 0.22 TCGA-EB-A5SE-01 1 205116643 205116643 G A DSTYK 3'UTR 0.21 TCGA-EB-A5SE-01 1 205890931 205890931 G A SLC26A9 Silent p.P606P 0.25 TCGA-EB-A5SE-01 1 20960316 20960316 G A PINK1 Missense_Mutation p.C92Y 0.69 deleterious(0.02) benign(0.001) TCGA-EB-A5SE-01 1 228247843 228247843 C T WNT3A 3'UTR 0.47 TCGA-EB-A5SE-01 1 228335363 228335363 G A GUK1 Silent p.V167V 0.05 TCGA-EB-A5SE-01 1 24413262 24413262 G A MYOM3 Missense_Mutation p.S557F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SE-01 1 247875174 247875174 T C OR6F1 Missense_Mutation p.K295R 0.26 tolerated(0.32) benign(0.048) TCGA-EB-A5SE-01 1 247978344 247978344 C T OR14A16 Missense_Mutation p.E230K 0.28 tolerated(0.05) benign(0.05) TCGA-EB-A5SE-01 1 248344193 248344193 G A OR2M2 Missense_Mutation p.M302I 0.60 deleterious(0.01) benign(0.006) TCGA-EB-A5SE-01 1 248616785 248616785 G A OR2T2 Missense_Mutation p.M229I 0.28 deleterious(0.04) benign(0.01) TCGA-EB-A5SE-01 1 27099905 27099905 C T ARID1A Missense_Mutation p.R1262C 0.47 unknown(0) TCGA-EB-A5SE-01 1 27240186 27240186 C T NR0B2 Silent p.Q82Q 0.44 TCGA-EB-A5SE-01 1 36752311 36752311 C T THRAP3 Silent p.S160S 0.39 TCGA-EB-A5SE-01 1 40881966 40881966 C T SMAP2 Missense_Mutation p.S267F 0.40 deleterious(0) possibly_damaging(0.691) TCGA-EB-A5SE-01 1 43317029 43317029 C T ZNF691 Missense_Mutation p.H165Y 0.50 deleterious(0) probably_damaging(0.997) TCGA-EB-A5SE-01 1 45088459 45088459 G C RNF220 Missense_Mutation p.K268N 0.38 tolerated(0.05) benign(0.216) TCGA-EB-A5SE-01 1 46746939 46746939 C T LRRC41 Silent p.E538E 0.44 TCGA-EB-A5SE-01 1 51767281 51767281 T A TTC39A Missense_Mutation p.Y343F 0.27 tolerated(0.09) benign(0.238) TCGA-EB-A5SE-01 1 55512301 55512301 G A PCSK9 Missense_Mutation p.D169N 0.30 tolerated(0.37) benign(0.002) TCGA-EB-A5SE-01 1 66081782 66081782 G A LEPR Missense_Mutation p.G696E 0.51 tolerated(0.18) benign(0.411) TCGA-EB-A5SE-01 1 74835079 74835079 C T FPGT-TNNI3K Nonsense_Mutation p.R607* 0.49 TCGA-EB-A5SE-01 1 7845570 7845570 C T PER3 Silent p.F66F 0.44 TCGA-EB-A5SE-01 1 79386016 79386016 G A ELTD1 Missense_Mutation p.S438L 0.59 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 20 18505092 18505092 C T SEC23B Missense_Mutation p.P128S 0.42 deleterious(0.02) possibly_damaging(0.728) TCGA-EB-A5SE-01 20 23066818 23066818 G A CD93 Silent p.S4S 0.78 TCGA-EB-A5SE-01 20 42328426 42328426 C T MYBL2 Silent p.V231V 0.41 TCGA-EB-A5SE-01 20 43052848 43052848 C T HNF4A Silent p.F361F 0.35 TCGA-EB-A5SE-01 20 489234 489234 G A CSNK2A1 5'UTR 0.55 TCGA-EB-A5SE-01 20 50407222 50407222 G A SALL4 Silent p.G600G 0.51 TCGA-EB-A5SE-01 20 51870939 51870939 G A TSHZ2 Silent p.S314S 0.44 TCGA-EB-A5SE-01 20 61391531 61391531 G C NTSR1 Missense_Mutation p.R390T 0.43 tolerated(0.12) benign(0.055) TCGA-EB-A5SE-01 20 61938855 61938855 C T COL20A1 Silent p.F170F 0.30 TCGA-EB-A5SE-01 20 62333528 62333528 G A ARFRP1 Silent p.S102S 0.40 TCGA-EB-A5SE-01 20 9438089 9438089 G A PLCB4 Missense_Mutation p.E997K 0.32 tolerated(0.38) possibly_damaging(0.716) TCGA-EB-A5SE-01 21 33887212 33887212 C T EVA1C Silent p.S346S 0.37 TCGA-EB-A5SE-01 21 41385231 41385231 G A DSCAM Silent p.S1923S 0.33 TCGA-EB-A5SE-01 21 41496209 41496209 G A DSCAM Silent p.S1203S 0.09 TCGA-EB-A5SE-01 21 43279754 43279754 G A PRDM15 Silent p.P326P 0.29 TCGA-EB-A5SE-01 22 18378061 18378061 G A MICAL3 Missense_Mutation p.R480W 0.33 probably_damaging(0.976) TCGA-EB-A5SE-01 22 22890661 22890661 C T PRAME Missense_Mutation p.G453D 0.44 deleterious(0.01) possibly_damaging(0.903) TCGA-EB-A5SE-01 22 41533698 41533698 C T EP300 Missense_Mutation p.P555L 0.49 unknown(0) TCGA-EB-A5SE-01 22 43623419 43623419 G A SCUBE1 Missense_Mutation p.P390S 0.64 tolerated(0.36) benign(0.064) TCGA-EB-A5SE-01 22 46762942 46762942 C T CELSR1 Missense_Mutation p.G2718E 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 22 50354965 50354965 G T PIM3 Splice_Site p.X66_splice 0.25 TCGA-EB-A5SE-01 2 113785678 113785678 C T IL36B Intron 0.45 TCGA-EB-A5SE-01 2 119735476 119735476 G A MARCO Missense_Mutation p.G244E 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5SE-01 2 138030215 138030215 C T THSD7B Silent p.S793S 0.24 TCGA-EB-A5SE-01 2 1426855 1426855 G A TPO Missense_Mutation p.E45K 0.37 tolerated(0.37) benign(0.006) TCGA-EB-A5SE-01 2 155099294 155099294 T G GALNT13 Missense_Mutation p.L188V 0.39 deleterious(0) probably_damaging(0.912) TCGA-EB-A5SE-01 2 155295184 155295184 C T GALNT13 Silent p.I492I 0.47 TCGA-EB-A5SE-01 2 155711613 155711613 G A KCNJ3 Missense_Mutation p.D432N 0.49 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-EB-A5SE-01 2 163144837 163144837 G A IFIH1 Silent p.S301S 0.35 TCGA-EB-A5SE-01 2 168110632 168110632 C T XIRP2 Missense_Mutation p.S3549L 0.58 probably_damaging(0.999) TCGA-EB-A5SE-01 2 179434448 179434448 G A TTN Silent p.L25471L 0.27 TCGA-EB-A5SE-01 2 179441453 179441453 C T TTN Missense_Mutation p.G23173E 0.43 TCGA-EB-A5SE-01 2 196709832 196709832 C G DNAH7 Missense_Mutation p.D2947H 0.24 deleterious(0.03) possibly_damaging(0.595) TCGA-EB-A5SE-01 2 215818782 215818782 G A ABCA12 Missense_Mutation p.P2148L 0.07 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 2 220423044 220423044 C T OBSL1 Missense_Mutation p.E1122K 0.26 deleterious(0.01) possibly_damaging(0.734) TCGA-EB-A5SE-01 2 226447030 226447030 C T NYAP2 Silent p.P299P 0.50 TCGA-EB-A5SE-01 2 231774600 231774600 G A GPR55 3'UTR 0.38 TCGA-EB-A5SE-01 2 233620964 233620964 C T GIGYF2 Missense_Mutation p.A100V 0.41 benign(0.241) TCGA-EB-A5SE-01 2 234238158 234238158 C T SAG Missense_Mutation p.P223L 0.50 deleterious(0) possibly_damaging(0.622) TCGA-EB-A5SE-01 2 241722490 241722490 C T KIF1A Missense_Mutation p.G279S 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A5SE-01 2 242793294 242793294 G A PDCD1 Silent p.S261S 0.38 TCGA-EB-A5SE-01 2 242793418 242793418 G A PDCD1 Missense_Mutation p.S220F 0.50 deleterious(0) possibly_damaging(0.564) TCGA-EB-A5SE-01 2 29451825 29451825 C T ALK Missense_Mutation p.G914R 0.64 tolerated(0.07) probably_damaging(0.999) TCGA-EB-A5SE-01 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.46 TCGA-EB-A5SE-01 2 3392243 3392243 C T TRAPPC12 Silent p.I283I 0.66 TCGA-EB-A5SE-01 2 47380147 47380147 G A C2orf61 Silent p.A30A 0.50 TCGA-EB-A5SE-01 2 89292150 89292150 G A IGKV1-8 Silent p.I41I 0.41 TCGA-EB-A5SE-01 2 90193280 90193280 G A IGKV1D-13 Silent p.L69L 0.16 TCGA-EB-A5SE-01 2 97494860 97494860 C T CNNM3 Missense_Mutation p.T683I 0.41 tolerated(0.09) benign(0.01) TCGA-EB-A5SE-01 3 114058231 114058231 G A ZBTB20 Missense_Mutation p.S616F 0.85 deleterious(0) probably_damaging(0.99) TCGA-EB-A5SE-01 3 12458381 12458381 G A PPARG Missense_Mutation p.G333D 0.78 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A5SE-01 3 170784365 170784365 C T TNIK Missense_Mutation p.A1287T 0.83 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SE-01 3 186954254 186954254 C T MASP1 Missense_Mutation p.V469M 0.74 tolerated(0.16) probably_damaging(0.946) TCGA-EB-A5SE-01 3 48491531 48491531 C T ATRIP Silent p.F112F 0.80 TCGA-EB-A5SE-01 3 49568863 49568863 C T DAG1 Missense_Mutation p.P307S 0.40 tolerated(0.45) probably_damaging(0.953) TCGA-EB-A5SE-01 3 51982569 51982569 C T PARP3 3'UTR 0.57 TCGA-EB-A5SE-01 3 54420781 54420781 G A CACNA2D3 Missense_Mutation p.E121K 0.23 tolerated(0.08) possibly_damaging(0.527) TCGA-EB-A5SE-01 4 100237264 100237264 G T ADH1B Missense_Mutation p.P120T 0.29 tolerated(0.43) benign(0.036) TCGA-EB-A5SE-01 4 122853681 122853681 C T TRPC3 Silent p.Q244Q 0.48 TCGA-EB-A5SE-01 4 159493933 159493933 C T RXFP1 Silent p.L45L 0.48 TCGA-EB-A5SE-01 4 175896912 175896912 C T ADAM29 Missense_Mutation p.P79L 0.53 deleterious(0) possibly_damaging(0.649) TCGA-EB-A5SE-01 4 187454983 187454983 C T MTNR1A Missense_Mutation p.E305K 0.42 deleterious(0) possibly_damaging(0.889) TCGA-EB-A5SE-01 4 3133098 3133098 C T HTT Missense_Mutation p.S691L 0.38 possibly_damaging(0.734) TCGA-EB-A5SE-01 4 36212230 36212230 C T ARAP2 Silent p.Q423Q 0.49 TCGA-EB-A5SE-01 4 38776432 38776432 G A TLR10 Silent p.F260F 0.40 TCGA-EB-A5SE-01 4 40339314 40339314 G A CHRNA9 Missense_Mutation p.D100N 0.46 tolerated(0.48) possibly_damaging(0.721) TCGA-EB-A5SE-01 4 5642528 5642528 G A EVC2 Silent p.L395L 0.44 TCGA-EB-A5SE-01 4 77283442 77283442 C T CCDC158 Silent p.K619K 0.39 TCGA-EB-A5SE-01 4 77303873 77303873 C T CCDC158 Silent p.R268R 0.36 TCGA-EB-A5SE-01 4 77631427 77631427 C T SHROOM3 Missense_Mutation p.R148W 0.45 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SE-01 4 94006333 94006333 C T GRID2 Silent p.L144L 0.46 TCGA-EB-A5SE-01 5 127623010 127623010 C G FBN2 Missense_Mutation p.K2290N 0.38 tolerated(0.08) possibly_damaging(0.568) TCGA-EB-A5SE-01 5 128977626 128977626 G A ADAMTS19 Missense_Mutation p.M609I 0.38 tolerated(0.09) benign(0.085) TCGA-EB-A5SE-01 5 134364803 134364803 G A PITX1 Missense_Mutation p.S204F 0.42 deleterious(0) probably_damaging(0.997) TCGA-EB-A5SE-01 5 137528294 137528294 C T CDC23 Silent p.Q355Q 0.39 TCGA-EB-A5SE-01 5 13769687 13769687 C T DNAH5 Missense_Mutation p.E3215K 0.07 possibly_damaging(0.621) TCGA-EB-A5SE-01 5 13901540 13901540 C T DNAH5 Missense_Mutation p.G625R 0.26 probably_damaging(0.988) TCGA-EB-A5SE-01 5 140049145 140049145 G A WDR55 Nonsense_Mutation p.W353* 0.40 TCGA-EB-A5SE-01 5 140249494 140249494 G A PCDHA11 Missense_Mutation p.R269Q 0.57 tolerated_low_confidence(0.23) benign(0.044) TCGA-EB-A5SE-01 5 140503739 140503739 C T PCDHB4 Missense_Mutation p.S720L 0.46 tolerated_low_confidence(0.05) benign(0.046) TCGA-EB-A5SE-01 5 140581023 140581023 C T PCDHB11 Missense_Mutation p.P559L 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A5SE-01 5 140594040 140594040 C T PCDHB13 Silent p.F115F 0.20 TCGA-EB-A5SE-01 5 140718536 140718536 G A PCDHGA1 Intron 0.33 TCGA-EB-A5SE-01 5 140735654 140735654 C T PCDHGA4 Missense_Mutation p.S296F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-EB-A5SE-01 5 147281131 147281131 C T C5orf46 Intron 0.60 TCGA-EB-A5SE-01 5 159640801 159640801 G A FABP6 Missense_Mutation p.R37K 0.38 tolerated_low_confidence(0.08) benign(0.001) TCGA-EB-A5SE-01 5 159776621 159776621 G A C1QTNF2 Missense_Mutation p.P183S 0.38 tolerated(0.1) unknown(0) TCGA-EB-A5SE-01 5 178408731 178408731 C T GRM6 Missense_Mutation p.R854Q 0.45 deleterious(0.01) benign(0.065) TCGA-EB-A5SE-01 5 21802475 21802475 G A CDH12 Missense_Mutation p.L353F 0.33 tolerated(0.12) benign(0.289) TCGA-EB-A5SE-01 5 32090247 32090247 C T PDZD2 Silent p.S2231S 0.39 TCGA-EB-A5SE-01 5 34042970 34042970 G A C1QTNF3 Silent p.P87P 0.41 TCGA-EB-A5SE-01 5 40999866 40999866 C T MROH2B Missense_Mutation p.E1500K 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-EB-A5SE-01 5 90020726 90020726 G A GPR98 Missense_Mutation p.E3276K 0.36 possibly_damaging(0.636) TCGA-EB-A5SE-01 5 96127814 96127814 C T ERAP1 Missense_Mutation p.E424K 0.34 tolerated(0.06) possibly_damaging(0.559) TCGA-EB-A5SE-01 6 128134093 128134093 C T THEMIS Missense_Mutation p.E565K 0.60 tolerated(0.15) benign(0.009) TCGA-EB-A5SE-01 6 152644623 152644623 G A SYNE1 Missense_Mutation p.R5303W 0.69 probably_damaging(0.912) TCGA-EB-A5SE-01 6 167728728 167728728 C T UNC93A Missense_Mutation p.R388C 0.68 deleterious(0) possibly_damaging(0.71) TCGA-EB-A5SE-01 6 18139929 18139929 G A TPMT Missense_Mutation p.S129L 0.60 tolerated(0.09) benign(0.058) TCGA-EB-A5SE-01 6 22569936 22569936 G A HDGFL1 Silent p.G44G 0.56 TCGA-EB-A5SE-01 6 2623880 2623880 G A C6orf195 Silent p.S59S 0.53 TCGA-EB-A5SE-01 6 28541349 28541349 G A SCAND3 Missense_Mutation p.P773S 0.32 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-EB-A5SE-01 6 28967775 28967775 T C ZNF311 Silent p.G47G 0.63 TCGA-EB-A5SE-01 6 29342395 29342395 G A OR12D3 Silent p.L224L 0.27 TCGA-EB-A5SE-01 6 31855876 31855876 G A EHMT2 Missense_Mutation p.P563S 0.25 tolerated(0.18) benign(0.224) TCGA-EB-A5SE-01 6 33289715 33289715 C T DAXX 5'UTR 0.20 TCGA-EB-A5SE-01 6 33384521 33384521 A G CUTA Missense_Mutation p.I168T 0.68 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SE-01 6 3850601 3850601 G A FAM50B Missense_Mutation p.E186K 0.21 deleterious(0.04) possibly_damaging(0.598) TCGA-EB-A5SE-01 6 41900346 41900346 C T BYSL Missense_Mutation p.R406W 0.34 deleterious(0) probably_damaging(0.986) TCGA-EB-A5SE-01 6 49754516 49754516 C T PGK2 Missense_Mutation p.E129K 0.25 deleterious(0.01) possibly_damaging(0.656) TCGA-EB-A5SE-01 6 52992897 52992897 G A GCM1 3'UTR 0.38 TCGA-EB-A5SE-01 6 84772692 84772692 A T MRAP2 Missense_Mutation p.T70S 0.55 tolerated(0.26) probably_damaging(0.994) TCGA-EB-A5SE-01 6 87967673 87967673 C T ZNF292 Silent p.F1442F 0.73 TCGA-EB-A5SE-01 6 90450000 90450000 G A MDN1 Missense_Mutation p.R1516C 0.72 possibly_damaging(0.625) TCGA-EB-A5SE-01 6 93953121 93953121 C T EPHA7 3'UTR 0.80 TCGA-EB-A5SE-01 6 93953122 93953122 C T EPHA7 3'UTR 0.73 TCGA-EB-A5SE-01 7 100304533 100304533 C T POP7 Missense_Mutation p.P27L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5SE-01 7 103338453 103338453 C G RELN Missense_Mutation p.Q330H 0.68 deleterious(0) probably_damaging(0.986) TCGA-EB-A5SE-01 7 103338454 103338454 T G RELN Missense_Mutation p.Q330P 0.69 deleterious(0) probably_damaging(0.979) TCGA-EB-A5SE-01 7 107600072 107600072 G A LAMB1 Intron 0.71 TCGA-EB-A5SE-01 7 116918113 116918113 G A WNT2 3'UTR 0.27 TCGA-EB-A5SE-01 7 117232082 117232082 G A CFTR Missense_Mutation p.E621K 0.17 deleterious(0.03) benign(0) TCGA-EB-A5SE-01 7 139092031 139092031 G A LUC7L2 Missense_Mutation p.D274N 0.80 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SE-01 7 139258054 139258054 G A HIPK2 Silent p.S1072S 0.71 TCGA-EB-A5SE-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.75 deleterious(0) probably_damaging(0.967) TCGA-EB-A5SE-01 7 142028401 142028401 T G TRBV6-1 Missense_Mutation p.D45E 0.20 tolerated(0.13) possibly_damaging(0.894) TCGA-EB-A5SE-01 7 142364669 142364669 C T TRBV24-1 Missense_Mutation p.P102S 0.70 tolerated(0.22) benign(0.223) TCGA-EB-A5SE-01 7 14378242 14378242 C T DGKB Missense_Mutation p.G675R 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 7 143807596 143807596 G A OR2A2 Silent p.K307K 0.15 TCGA-EB-A5SE-01 7 148801424 148801424 G A ZNF425 Silent p.L513L 0.12 TCGA-EB-A5SE-01 7 150218029 150218029 C T GIMAP7 3'UTR 0.12 TCGA-EB-A5SE-01 7 150690942 150690942 G A NOS3 Silent p.L17L 0.19 TCGA-EB-A5SE-01 7 154237647 154237647 G A DPP6 Missense_Mutation p.G163E 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 7 1607478 1607478 G C PSMG3 Missense_Mutation p.I75M 0.18 tolerated(0.11) possibly_damaging(0.775) TCGA-EB-A5SE-01 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.38 tolerated(0.1) possibly_damaging(0.816) TCGA-EB-A5SE-01 7 41729866 41729866 G A INHBA Silent p.F221F 0.43 TCGA-EB-A5SE-01 7 50468178 50468178 C T IKZF1 Silent p.F429F 0.31 TCGA-EB-A5SE-01 7 94230005 94230005 G A SGCE Silent p.V330V 0.29 TCGA-EB-A5SE-01 7 99693081 99693081 G A MCM7 Silent p.H536H 0.17 TCGA-EB-A5SE-01 7 99693082 99693082 T A MCM7 Missense_Mutation p.H536L 0.16 deleterious(0) probably_damaging(0.989) TCGA-EB-A5SE-01 8 100832315 100832315 C T VPS13B Missense_Mutation p.P3012S 0.41 deleterious(0.01) possibly_damaging(0.641) TCGA-EB-A5SE-01 8 125035755 125035755 C T FER1L6 Silent p.I735I 0.41 TCGA-EB-A5SE-01 8 143866648 143866648 G A LY6D Missense_Mutation p.P126S 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A5SE-01 8 144650333 144650333 C T MROH6 Silent p.L581L 0.38 TCGA-EB-A5SE-01 8 22474945 22474945 C T CCAR2 Missense_Mutation p.L620F 0.43 tolerated(0.68) benign(0.067) TCGA-EB-A5SE-01 8 22864826 22864826 C T RHOBTB2 Silent p.G378G 0.40 TCGA-EB-A5SE-01 8 25745418 25745418 G A EBF2 Silent p.I274I 0.38 TCGA-EB-A5SE-01 8 2855612 2855612 C T CSMD1 Silent p.T2766T 0.40 TCGA-EB-A5SE-01 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.40 TCGA-EB-A5SE-01 8 48848431 48848431 C A PRKDC Missense_Mutation p.E436D 0.42 probably_damaging(0.999) TCGA-EB-A5SE-01 8 62371063 62371063 G A CLVS1 Silent p.S313S 0.48 TCGA-EB-A5SE-01 8 77896063 77896063 C T PEX2 Missense_Mutation p.E118K 0.54 deleterious(0) possibly_damaging(0.896) TCGA-EB-A5SE-01 8 94747588 94747588 G A RBM12B Missense_Mutation p.R351C 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A5SE-01 9 104357199 104357199 C T PPP3R2 Missense_Mutation p.G5E 0.52 deleterious(0) probably_damaging(0.993) TCGA-EB-A5SE-01 9 104449125 104449125 G A GRIN3A Missense_Mutation p.R353C 0.42 deleterious(0.02) benign(0.386) TCGA-EB-A5SE-01 9 107379976 107379976 C T OR13C9 Silent p.R170R 0.43 TCGA-EB-A5SE-01 9 111679871 111679871 G A IKBKAP Missense_Mutation p.L274F 0.42 deleterious(0.03) probably_damaging(0.993) TCGA-EB-A5SE-01 9 111947816 111947816 C T EPB41L4B Missense_Mutation p.E791K 0.30 deleterious_low_confidence(0.04) benign(0.196) TCGA-EB-A5SE-01 9 112166836 112166836 G A PTPN3 Silent p.F615F 0.56 TCGA-EB-A5SE-01 9 117185685 117185685 C T DFNB31 Missense_Mutation p.G512E 0.40 deleterious(0.02) benign(0.174) TCGA-EB-A5SE-01 9 117185686 117185686 C T DFNB31 Missense_Mutation p.G512R 0.40 tolerated(0.09) benign(0.336) TCGA-EB-A5SE-01 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.39 tolerated(0.12) benign(0.004) TCGA-EB-A5SE-01 9 124116909 124116909 G A STOM Missense_Mutation p.R70C 0.45 deleterious(0.03) benign(0.431) TCGA-EB-A5SE-01 9 133799688 133799688 G A FIBCD1 Silent p.P216P 0.45 TCGA-EB-A5SE-01 9 135863856 135863856 G A GFI1B Splice_Site p.X170_splice 0.40 TCGA-EB-A5SE-01 9 136917538 136917538 T C BRD3 Missense_Mutation p.M81V 0.37 deleterious(0) benign(0.365) TCGA-EB-A5SE-01 9 16436784 16436784 G A BNC2 Nonsense_Mutation p.R470* 0.39 TCGA-EB-A5SE-01 9 33923424 33923424 G A UBAP2 Missense_Mutation p.P950L 0.39 deleterious(0.01) unknown(0) TCGA-EB-A5SE-01 9 34500828 34500828 C T DNAI1 Missense_Mutation p.A337V 0.47 deleterious(0.01) possibly_damaging(0.811) TCGA-EB-A5SE-01 9 34662686 34662686 T C CCL27 5'UTR 0.33 TCGA-EB-A5SE-01 9 38396604 38396604 G A ALDH1B1 Missense_Mutation p.G287S 0.42 deleterious(0.02) probably_damaging(1) TCGA-EB-A5SE-01 9 77282747 77282747 G A RORB Silent p.K347K 0.38 TCGA-EB-A5SE-01 X 105280808 105280808 G A SERPINA7 Missense_Mutation p.S81F 0.83 deleterious(0) probably_damaging(1) TCGA-EB-A5SE-01 X 108636231 108636231 C T GUCY2F Silent p.R826R 0.78 TCGA-EB-A5SE-01 X 122460008 122460008 G A GRIA3 Missense_Mutation p.E214K 0.88 tolerated(0.11) probably_damaging(1) TCGA-EB-A5SE-01 X 132730587 132730587 T A GPC3 Missense_Mutation p.D508V 0.92 deleterious(0.04) benign(0.305) TCGA-EB-A5SE-01 X 1544511 1544511 C T ASMTL Missense_Mutation p.D323N 0.41 deleterious(0.03) possibly_damaging(0.889) TCGA-EB-A5SF-01 12 102071077 102071077 G A MYBPC1 Missense_Mutation p.G998E 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A5SF-01 12 5154030 5154030 C T KCNA5 Silent p.I239I 0.32 TCGA-EB-A5SF-01 12 7174404 7174404 C T C1S Missense_Mutation p.S350F 0.22 deleterious(0) probably_damaging(0.994) TCGA-EB-A5SF-01 14 20296101 20296101 G C OR4N2 Missense_Mutation p.R165P 0.17 tolerated(0.8) benign(0.038) TCGA-EB-A5SF-01 15 45951156 45951156 G A SQRDL Missense_Mutation p.R12H 0.18 tolerated_low_confidence(0.27) benign(0.001) TCGA-EB-A5SF-01 17 14683245 14683245 C T AC005863.1 RNA 0.30 TCGA-EB-A5SF-01 17 66511682 66511683 - AT PRKAR1A Frame_Shift_Ins p.A48Dfs*82 0.27 TCGA-EB-A5SF-01 18 29118773 29118773 C T DSG2 Silent p.L571L 0.22 TCGA-EB-A5SF-01 18 32823176 32823176 T A ZNF397 Missense_Mutation p.S159T 0.23 tolerated(0.6) benign(0.075) TCGA-EB-A5SF-01 19 1482932 1482932 G A PCSK4 Silent p.T553T 0.44 TCGA-EB-A5SF-01 19 42354740 42354740 C T DMRTC2 Silent p.I321I 0.32 TCGA-EB-A5SF-01 19 45285749 45285749 G C CBLC Splice_Site p.X260_splice 0.50 TCGA-EB-A5SF-01 19 45480719 45480719 T C CLPTM1 Splice_Site p.X196_splice 0.36 TCGA-EB-A5SF-01 19 57869174 57869174 A G ZNF304 Missense_Mutation p.N646S 0.39 tolerated(1) benign(0.007) TCGA-EB-A5SF-01 1 120462957 120462957 G A NOTCH2 Nonsense_Mutation p.Q1792* 0.11 TCGA-EB-A5SF-01 1 144931601 144931601 G A PDE4DIP Intron 0.08 TCGA-EB-A5SF-01 2 143742727 143742727 T C KYNU Silent p.D268D 0.32 TCGA-EB-A5SF-01 2 179396850 179396850 G A TTN Missense_Mutation p.S34831L 0.36 TCGA-EB-A5SF-01 2 99900827 99900827 G A LYG1 3'UTR 0.31 TCGA-EB-A5SF-01 5 1278834 1278834 C T TERT Silent p.Q736Q 0.24 TCGA-EB-A5SF-01 5 1280341 1280341 C T TERT Missense_Mutation p.D628N 0.21 tolerated(1) benign(0.002) TCGA-EB-A5SF-01 5 17275436 17275436 G A BASP1 Silent p.P37P 0.11 TCGA-EB-A5SF-01 5 19721457 19721457 T G CDH18 Silent p.T214T 0.08 TCGA-EB-A5SF-01 5 37179517 37179517 G A C5orf42 Silent p.F1922F 0.27 TCGA-EB-A5SF-01 5 37179530 37179530 G T C5orf42 Missense_Mutation p.S1918Y 0.26 deleterious(0.01) benign(0.435) TCGA-EB-A5SF-01 5 38932037 38932037 C G OSMR Missense_Mutation p.I755M 0.19 deleterious(0.01) possibly_damaging(0.595) TCGA-EB-A5SF-01 5 38932592 38932592 C T OSMR Silent p.I774I 0.22 TCGA-EB-A5SF-01 5 38932986 38932986 C G OSMR Missense_Mutation p.L794V 0.18 tolerated(0.11) benign(0.051) TCGA-EB-A5SF-01 5 38933185 38933185 C G OSMR Missense_Mutation p.T860S 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A5SF-01 5 38933286 38933286 C T OSMR Silent p.L894L 0.20 TCGA-EB-A5SF-01 5 38933362 38933362 C T OSMR Missense_Mutation p.S919F 0.19 deleterious(0) probably_damaging(0.982) TCGA-EB-A5SF-01 6 138584292 138584292 G A KIAA1244 Missense_Mutation p.D558N 0.29 tolerated(0.3) benign(0.244) TCGA-EB-A5SF-01 6 27101004 27101005 - A HIST1H2AG Frame_Shift_Ins p.L52Hfs*71 0.25 TCGA-EB-A5SF-01 6 31901989 31901989 C T C2 Silent p.N254N 0.25 TCGA-EB-A5SF-01 6 73102473 73102473 C A RIMS1 Missense_Mutation p.Q1527K 0.26 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SF-01 7 150027415 150027415 G T ZBED6CL 5'UTR 0.25 TCGA-EB-A5SF-01 7 150769149 150769149 C T SLC4A2 Missense_Mutation p.R821C 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A5SF-01 7 4823016 4823016 G A AP5Z1 Missense_Mutation p.E146K 0.26 deleterious(0) probably_damaging(0.972) TCGA-EB-A5SF-01 7 48319406 48319406 A C ABCA13 Missense_Mutation p.E2872A 0.35 benign(0.002) TCGA-EB-A5SF-01 8 67356885 67356885 C G ADHFE1 Silent p.S85S 0.29 TCGA-EB-A5SF-01 9 123313098 123313098 T C CDK5RAP2 Missense_Mutation p.H93R 0.25 deleterious(0) possibly_damaging(0.537) TCGA-EB-A5SF-01 9 130566807 130566807 C T FPGS Silent p.I99I 0.38 TCGA-EB-A5SF-01 9 140082963 140082963 C A ANAPC2 Missense_Mutation p.A8S 0.42 tolerated_low_confidence(0.31) benign(0.001) TCGA-EB-A5SF-01 X 142718512 142718512 G A SLITRK4 Missense_Mutation p.A138V 0.40 tolerated(0.97) probably_damaging(0.996) TCGA-EB-A5SG-06 10 101639890 101639890 G A DNMBP Missense_Mutation p.P1409L 0.11 tolerated(0.59) benign(0.001) TCGA-EB-A5SG-06 10 104140354 104140354 C T GBF1 Missense_Mutation p.P1694L 0.11 tolerated(0.33) benign(0.001) TCGA-EB-A5SG-06 10 122348866 122348866 G A PPAPDC1A Missense_Mutation p.R223K 0.06 deleterious(0) possibly_damaging(0.893) TCGA-EB-A5SG-06 10 127437977 127437977 C T EDRF1 Intron 0.14 TCGA-EB-A5SG-06 10 15255781 15255781 G A FAM171A1 Silent p.V602V 0.06 TCGA-EB-A5SG-06 10 26589854 26589854 G A GAD2 Silent p.L574L 0.13 TCGA-EB-A5SG-06 10 38647312 38647312 G A HSD17B7P2 RNA 0.11 TCGA-EB-A5SG-06 10 46122157 46122157 C T ZFAND4 Missense_Mutation p.G372R 0.15 tolerated(0.47) probably_damaging(0.989) TCGA-EB-A5SG-06 10 47086948 47086948 G A NPY4R Silent p.G55G 0.04 TCGA-EB-A5SG-06 10 61842455 61842455 A T ANK3 Missense_Mutation p.F1414Y 0.13 probably_damaging(0.993) TCGA-EB-A5SG-06 10 61967799 61967799 C T ANK3 Missense_Mutation p.A397T 0.07 probably_damaging(0.999) TCGA-EB-A5SG-06 10 63852711 63852711 C T ARID5B Silent p.Y1163Y 0.11 TCGA-EB-A5SG-06 10 63852712 63852712 C T ARID5B Missense_Mutation p.P1164S 0.10 deleterious(0) probably_damaging(0.986) TCGA-EB-A5SG-06 10 71075669 71075669 C T HK1 Intron 0.09 TCGA-EB-A5SG-06 10 75574908 75574908 G A CAMK2G Silent p.L512L 0.09 TCGA-EB-A5SG-06 10 87487642 87487642 C T GRID1 Nonsense_Mutation p.W501* 0.13 TCGA-EB-A5SG-06 10 93723839 93723839 C T BTAF1 Silent p.P470P 0.14 TCGA-EB-A5SG-06 10 95720835 95720835 C T PIPSL RNA 0.10 TCGA-EB-A5SG-06 10 96827110 96827110 G A CYP2C8 Silent p.I112I 0.12 TCGA-EB-A5SG-06 10 99150185 99150185 G A RRP12 Missense_Mutation p.P250S 0.12 deleterious(0) probably_damaging(0.925) TCGA-EB-A5SG-06 11 101762145 101762145 A T ANGPTL5 Missense_Mutation p.N344K 0.04 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 11 10648027 10648027 A G MRVI1 Missense_Mutation p.I285T 0.20 tolerated(0.42) benign(0.001) TCGA-EB-A5SG-06 11 120348914 120348914 T C ARHGEF12 Silent p.S1194S 0.10 TCGA-EB-A5SG-06 11 129756296 129756296 G A NFRKB Silent p.C140C 0.12 TCGA-EB-A5SG-06 11 17418785 17418785 G A ABCC8 Missense_Mutation p.H1315Y 0.17 deleterious(0.01) benign(0) TCGA-EB-A5SG-06 11 5322936 5322936 C T OR51B4 Missense_Mutation p.G81S 0.15 tolerated(0.09) benign(0.039) TCGA-EB-A5SG-06 11 55038462 55038462 C T TRIM48 3'UTR 0.28 TCGA-EB-A5SG-06 11 55322867 55322867 C T OR4C15 Missense_Mutation p.S362F 0.29 deleterious_low_confidence(0.02) benign(0.246) TCGA-EB-A5SG-06 11 5537108 5537108 C T UBQLNL Missense_Mutation p.M188I 0.11 tolerated(0.46) benign(0.003) TCGA-EB-A5SG-06 11 56058503 56058503 G A OR8H1 Silent p.F12F 0.13 TCGA-EB-A5SG-06 11 62487585 62487585 G A HNRNPUL2 Missense_Mutation p.P564S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 11 62984833 62984833 G A SLC22A25 Silent p.L261L 0.24 TCGA-EB-A5SG-06 11 66631274 66631274 G A PC Missense_Mutation p.L447F 0.10 deleterious(0) probably_damaging(0.983) TCGA-EB-A5SG-06 11 66631275 66631275 G A PC Silent p.A446A 0.11 TCGA-EB-A5SG-06 12 100173666 100173666 A G ANKS1B Missense_Mutation p.I277T 0.12 deleterious(0) probably_damaging(0.972) TCGA-EB-A5SG-06 12 103240729 103240729 C T PAH Missense_Mutation p.E305K 0.10 deleterious(0) probably_damaging(0.991) TCGA-EB-A5SG-06 12 106460542 106460542 C T NUAK1 3'UTR 0.17 TCGA-EB-A5SG-06 12 106903195 106903195 C T POLR3B Intron 0.12 TCGA-EB-A5SG-06 12 108600113 108600113 C T WSCD2 Nonsense_Mutation p.R144* 0.14 TCGA-EB-A5SG-06 12 108923975 108923975 G A SART3 Missense_Mutation p.P620L 0.09 tolerated(0.18) benign(0.01) TCGA-EB-A5SG-06 12 11461315 11461315 C T PRB4 Missense_Mutation p.G201E 0.09 tolerated_low_confidence(0.21) unknown(0) TCGA-EB-A5SG-06 12 122669236 122669236 C T LRRC43 Silent p.F107F 0.08 TCGA-EB-A5SG-06 12 21918537 21918537 C T KCNJ8 3'UTR 0.21 TCGA-EB-A5SG-06 12 31815175 31815175 C T METTL20 Silent p.Y96Y 0.09 TCGA-EB-A5SG-06 12 43771331 43771331 C T ADAMTS20 Missense_Mutation p.R1611K 0.14 tolerated(0.06) benign(0.108) TCGA-EB-A5SG-06 12 51089141 51089141 A T DIP2B Missense_Mutation p.K604I 0.15 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SG-06 12 52714916 52714916 G A KRT83 Silent p.F68F 0.06 TCGA-EB-A5SG-06 12 55795213 55795213 G A OR6C65 Missense_Mutation p.E301K 0.16 tolerated_low_confidence(0.07) benign(0.001) TCGA-EB-A5SG-06 12 55820223 55820223 G A OR6C76 Silent p.R62R 0.08 TCGA-EB-A5SG-06 12 58160754 58160754 G A CYP27B1 Missense_Mutation p.S24F 0.08 deleterious(0.01) benign(0.007) TCGA-EB-A5SG-06 12 63195720 63195720 G T PPM1H Missense_Mutation p.S211Y 0.07 deleterious(0.03) probably_damaging(0.935) TCGA-EB-A5SG-06 12 66641908 66641908 C T IRAK3 Missense_Mutation p.S583F 0.09 deleterious_low_confidence(0) benign(0.038) TCGA-EB-A5SG-06 12 72936121 72936121 C T TRHDE Silent p.F546F 0.13 TCGA-EB-A5SG-06 12 7531821 7531821 C T CD163L1 Silent p.Q708Q 0.09 TCGA-EB-A5SG-06 12 7531843 7531843 C T CD163L1 Missense_Mutation p.G701E 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 12 7883438 7883438 C T CLEC4C Missense_Mutation p.R151Q 0.14 tolerated(0.28) possibly_damaging(0.745) TCGA-EB-A5SG-06 13 103279436 103279436 C T TPP2 Missense_Mutation p.P287S 0.13 deleterious(0) probably_damaging(0.914) TCGA-EB-A5SG-06 13 31722561 31722561 A G HSPH1 Silent p.V398V 0.07 TCGA-EB-A5SG-06 13 49281077 49281077 C T CYSLTR2 Missense_Mutation p.P42S 0.09 tolerated(0.51) probably_damaging(1) TCGA-EB-A5SG-06 13 52989937 52989937 G A VPS36 3'UTR 0.11 TCGA-EB-A5SG-06 14 101515032 101515032 C T MIR544A RNA 0.12 TCGA-EB-A5SG-06 14 106845446 106845446 C T IGHV3-35 Silent p.R76R 0.11 TCGA-EB-A5SG-06 14 22985275 22985275 C T TRAJ27 Silent p.T9T 0.10 TCGA-EB-A5SG-06 14 30135411 30135411 G A PRKD1 Missense_Mutation p.S136F 0.12 deleterious(0.02) possibly_damaging(0.66) TCGA-EB-A5SG-06 14 36302296 36302296 C T BRMS1L Missense_Mutation p.R116C 0.23 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SG-06 14 64746761 64746761 C T ESR2 Missense_Mutation p.G158E 0.13 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SG-06 14 65253758 65253758 C T SPTB Silent p.K975K 0.11 TCGA-EB-A5SG-06 14 67431911 67431911 C T GPHN Missense_Mutation p.P278S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 14 72431560 72431560 G A RGS6 Missense_Mutation p.E18K 0.11 tolerated_low_confidence(0.09) benign(0.027) TCGA-EB-A5SG-06 14 80669529 80669529 C T DIO2 Missense_Mutation p.G145R 0.20 tolerated(0.37) possibly_damaging(0.786) TCGA-EB-A5SG-06 14 92258768 92258768 G A TC2N Silent p.T330T 0.11 TCGA-EB-A5SG-06 14 93995633 93995633 G A UNC79 Missense_Mutation p.D175N 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-EB-A5SG-06 14 94756928 94756928 C T SERPINA10 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) unknown(0) TCGA-EB-A5SG-06 14 97347544 97347544 A G VRK1 Silent p.%3D 0.26 TCGA-EB-A5SG-06 15 23811429 23811429 C T MKRN3 Missense_Mutation p.S167F 0.21 tolerated(0.1) benign(0.03) TCGA-EB-A5SG-06 15 34551103 34551103 G A SLC12A6 Missense_Mutation p.R152C 0.13 deleterious(0) probably_damaging(0.915) TCGA-EB-A5SG-06 15 54914599 54914599 C T UNC13C Missense_Mutation p.H2061Y 0.09 tolerated_low_confidence(0.07) benign(0.005) TCGA-EB-A5SG-06 15 64017527 64017527 A G HERC1 Missense_Mutation p.F1178L 0.17 benign(0.001) TCGA-EB-A5SG-06 15 65678271 65678271 G A IGDCC4 Silent p.P1026P 0.15 TCGA-EB-A5SG-06 15 67479753 67479753 C T SMAD3 Nonsense_Mutation p.Q354* 0.11 TCGA-EB-A5SG-06 15 72432498 72432498 C T SENP8 Silent p.F178F 0.11 TCGA-EB-A5SG-06 15 78485862 78485862 C T ACSBG1 Missense_Mutation p.E217K 0.12 tolerated(0.14) benign(0.232) TCGA-EB-A5SG-06 15 78888994 78888994 C T CHRNA3 Silent p.G490G 0.16 TCGA-EB-A5SG-06 15 78888995 78888995 C T CHRNA3 Missense_Mutation p.G490E 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 15 84690343 84690343 G A ADAMTSL3 Silent p.A1485A 0.14 TCGA-EB-A5SG-06 16 1254209 1254209 C T CACNA1H Silent p.V734V 0.15 TCGA-EB-A5SG-06 16 20487038 20487038 G A ACSM2A Silent p.E347E 0.07 TCGA-EB-A5SG-06 16 2546500 2546500 C T RP11-20I23.1 Silent p.I117I 0.11 TCGA-EB-A5SG-06 16 28878334 28878334 G A SH2B1 Missense_Mutation p.E307K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 16 29993025 29993025 C T TAOK2 Silent p.A233A 0.06 TCGA-EB-A5SG-06 16 31049305 31049305 C T STX4 Missense_Mutation p.S146F 0.20 deleterious(0.02) probably_damaging(0.949) TCGA-EB-A5SG-06 16 3165541 3165541 G A ZNF205 Silent p.K81K 0.12 TCGA-EB-A5SG-06 16 3255030 3255030 C T OR1F1 Missense_Mutation p.P262S 0.13 deleterious(0.03) possibly_damaging(0.562) TCGA-EB-A5SG-06 16 601394 601394 C T CAPN15 Missense_Mutation p.S720F 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 16 85954861 85954861 C T IRF8 Silent p.F418F 0.06 TCGA-EB-A5SG-06 17 10321968 10321968 A G MYH8 Silent p.L169L 0.18 TCGA-EB-A5SG-06 17 10427124 10427124 G A MYH2 Silent p.L1751L 0.08 TCGA-EB-A5SG-06 17 11659918 11659918 C T DNAH9 Silent p.L2258L 0.07 TCGA-EB-A5SG-06 17 16024455 16024455 G A NCOR1 Missense_Mutation p.S588F 0.07 probably_damaging(0.997) TCGA-EB-A5SG-06 17 18541698 18541698 C T TBC1D28 Silent p.A105A 0.08 TCGA-EB-A5SG-06 17 29857406 29857406 C T RAB11FIP4 Silent p.L572L 0.09 TCGA-EB-A5SG-06 17 39115076 39115076 G A KRT39 Missense_Mutation p.P418L 0.09 deleterious(0.04) benign(0.024) TCGA-EB-A5SG-06 17 42636342 42636342 C T FZD2 Missense_Mutation p.S429F 0.10 tolerated(0.62) benign(0.034) TCGA-EB-A5SG-06 17 47284154 47284154 G A GNGT2 Missense_Mutation p.P59S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 17 62043903 62043903 C T SCN4A Silent p.G346G 0.14 TCGA-EB-A5SG-06 17 7643748 7643748 G A DNAH2 Missense_Mutation p.G463R 0.11 benign(0.02) TCGA-EB-A5SG-06 17 7643749 7643749 G A DNAH2 Missense_Mutation p.G463E 0.10 benign(0.261) TCGA-EB-A5SG-06 17 76802333 76802333 G A USP36 Silent p.L707L 0.10 TCGA-EB-A5SG-06 17 7811260 7811260 C G CHD3 Missense_Mutation p.P1751R 0.08 possibly_damaging(0.804) TCGA-EB-A5SG-06 18 19763002 19763002 G A GATA6 Missense_Mutation p.G540R 0.10 tolerated(0.09) benign(0.039) TCGA-EB-A5SG-06 18 31318615 31318615 C T ASXL3 Missense_Mutation p.P416L 0.10 benign(0.193) TCGA-EB-A5SG-06 18 40850235 40850235 C T SYT4 3'UTR 0.16 TCGA-EB-A5SG-06 18 40850236 40850236 C T SYT4 3'UTR 0.15 TCGA-EB-A5SG-06 18 50705382 50705382 G A DCC Missense_Mutation p.G490E 0.14 tolerated(0.7) benign(0.094) TCGA-EB-A5SG-06 18 67816141 67816141 G A RTTN Missense_Mutation p.P769S 0.05 tolerated(0.12) benign(0.01) TCGA-EB-A5SG-06 19 10080598 10080598 C T COL5A3 Missense_Mutation p.G1313S 0.10 unknown(0) TCGA-EB-A5SG-06 19 10467257 10467257 C T TYK2 Silent p.R868R 0.06 TCGA-EB-A5SG-06 19 16000404 16000404 G A CYP4F2 Silent p.L249L 0.10 TCGA-EB-A5SG-06 19 19825212 19825212 C T ZNF14 Missense_Mutation p.E30K 0.09 tolerated(0.26) benign(0.001) TCGA-EB-A5SG-06 19 22379442 22379442 C T ZNF676 5'UTR 0.07 TCGA-EB-A5SG-06 19 2832427 2832427 C T ZNF554 Missense_Mutation p.S127F 0.07 tolerated(0.24) benign(0) TCGA-EB-A5SG-06 19 2853485 2853485 C T ZNF555 Silent p.H474H 0.08 TCGA-EB-A5SG-06 19 31039166 31039166 C T ZNF536 Silent p.V880V 0.12 TCGA-EB-A5SG-06 19 36577688 36577688 C T WDR62 Missense_Mutation p.S581F 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 19 38160808 38160808 C T ZNF781 Missense_Mutation p.R81K 0.11 deleterious(0) possibly_damaging(0.901) TCGA-EB-A5SG-06 19 41807520 41807520 C T HNRNPUL1 Missense_Mutation p.P533L 0.12 deleterious(0) unknown(0) TCGA-EB-A5SG-06 19 42853729 42853729 C T MEGF8 Missense_Mutation p.P726S 0.16 tolerated(0.63) benign(0.127) TCGA-EB-A5SG-06 19 46313906 46313906 C T RSPH6A Silent p.R281R 0.13 TCGA-EB-A5SG-06 19 51728780 51728780 C T CD33 Missense_Mutation p.S115L 0.12 tolerated(0.11) benign(0.206) TCGA-EB-A5SG-06 19 52249686 52249686 T C FPR1 Missense_Mutation p.K188E 0.08 tolerated(1) benign(0) TCGA-EB-A5SG-06 19 53741127 53741127 G A ZNF677 Missense_Mutation p.H285Y 0.10 deleterious(0) probably_damaging(0.964) TCGA-EB-A5SG-06 19 55687184 55687184 C T SYT5 Missense_Mutation p.D145N 0.09 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SG-06 19 55687185 55687185 C T SYT5 Silent p.S144S 0.09 TCGA-EB-A5SG-06 19 56363518 56363518 G A NLRP4 Silent p.R24R 0.08 TCGA-EB-A5SG-06 19 57326575 57326575 G A PEG3 Missense_Mutation p.H1079Y 0.08 tolerated(0.25) benign(0.006) TCGA-EB-A5SG-06 19 58117801 58117801 C T ZNF530 Missense_Mutation p.S303F 0.13 tolerated(0.23) benign(0.361) TCGA-EB-A5SG-06 19 58490031 58490031 T C ZNF606 Missense_Mutation p.I673V 0.08 tolerated(0.17) benign(0.219) TCGA-EB-A5SG-06 19 9204238 9204238 C T OR1M1 Silent p.F106F 0.12 TCGA-EB-A5SG-06 19 9578875 9578875 C T ZNF560 Missense_Mutation p.D250N 0.12 tolerated(0.19) possibly_damaging(0.811) TCGA-EB-A5SG-06 1 10239580 10239580 C T UBE4B Silent p.P1269P 0.04 TCGA-EB-A5SG-06 1 110026626 110026626 G A ATXN7L2 Silent p.R17R 0.17 TCGA-EB-A5SG-06 1 113059863 113059863 C T WNT2B Missense_Mutation p.R268C 0.08 deleterious(0) probably_damaging(0.93) TCGA-EB-A5SG-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.16 tolerated(0.06) benign(0.006) TCGA-EB-A5SG-06 1 117158957 117158957 G A IGSF3 Nonsense_Mutation p.Q56* 0.17 TCGA-EB-A5SG-06 1 153085163 153085163 G A SPRR2F Missense_Mutation p.P16L 0.06 unknown(0) TCGA-EB-A5SG-06 1 156876099 156876099 T A PEAR1 Silent p.R113R 0.14 TCGA-EB-A5SG-06 1 157516835 157516835 C T FCRL5 Missense_Mutation p.E69K 0.08 tolerated(0.26) benign(0.192) TCGA-EB-A5SG-06 1 157559173 157559173 G T FCRL4 Missense_Mutation p.T43N 0.09 deleterious(0) probably_damaging(0.995) TCGA-EB-A5SG-06 1 158436086 158436086 C A OR10K1 Silent p.L245L 0.10 TCGA-EB-A5SG-06 1 158624456 158624456 C T SPTA1 Missense_Mutation p.R994Q 0.12 deleterious(0.03) benign(0.057) TCGA-EB-A5SG-06 1 158644202 158644202 C T SPTA1 Missense_Mutation p.D423N 0.09 tolerated(0.13) possibly_damaging(0.531) TCGA-EB-A5SG-06 1 163044187 163044187 C T RGS4 Missense_Mutation p.A249V 0.04 deleterious(0.02) probably_damaging(0.969) TCGA-EB-A5SG-06 1 171504724 171504724 C T PRRC2C Silent p.F675F 0.10 TCGA-EB-A5SG-06 1 185267166 185267166 G A IVNS1ABP 3'UTR 0.07 TCGA-EB-A5SG-06 1 196648872 196648872 G A CFH Missense_Mutation p.G247R 0.11 tolerated(0.13) possibly_damaging(0.532) TCGA-EB-A5SG-06 1 201965455 201965455 C T RNPEP Intron 0.17 TCGA-EB-A5SG-06 1 209879168 209879168 G A HSD11B1 Missense_Mutation p.G34E 0.09 deleterious(0) probably_damaging(0.95) TCGA-EB-A5SG-06 1 21798162 21798162 C T NBPF3 Missense_Mutation p.L183F 0.11 tolerated(0.1) possibly_damaging(0.86) TCGA-EB-A5SG-06 1 225155458 225155458 C T DNAH14 Intron 0.14 TCGA-EB-A5SG-06 1 227843440 227843440 G A ZNF678 Missense_Mutation p.G497S 0.10 tolerated(0.09) benign(0.141) TCGA-EB-A5SG-06 1 228434305 228434305 G A OBSCN Silent p.L1370L 0.07 TCGA-EB-A5SG-06 1 22974268 22974268 C T C1QC Missense_Mutation p.P244S 0.07 deleterious(0) possibly_damaging(0.593) TCGA-EB-A5SG-06 1 248059443 248059443 C T OR2W3 Silent p.I185I 0.13 TCGA-EB-A5SG-06 1 248569574 248569574 G A OR2T1 Silent p.G93G 0.05 TCGA-EB-A5SG-06 1 26610879 26610879 G A UBXN11 Missense_Mutation p.A316V 0.07 tolerated(0.34) benign(0.01) TCGA-EB-A5SG-06 1 27120996 27120996 C T PIGV Silent p.L157L 0.19 TCGA-EB-A5SG-06 1 34191063 34191063 A G CSMD2 Missense_Mutation p.V821A 0.09 tolerated(0.56) benign(0.098) TCGA-EB-A5SG-06 1 44595357 44595357 C T KLF17 Silent p.P138P 0.19 TCGA-EB-A5SG-06 1 46978179 46978179 C T DMBX1 3'UTR 0.19 TCGA-EB-A5SG-06 1 47079024 47079024 G T MOB3C Silent p.A42A 0.11 TCGA-EB-A5SG-06 1 57161811 57161811 G A PRKAA2 Missense_Mutation p.R256Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 1 57169951 57169951 C T PRKAA2 Missense_Mutation p.H366Y 0.12 tolerated(0.12) benign(0.313) TCGA-EB-A5SG-06 1 6285225 6285225 T C ICMT Missense_Mutation p.H257R 0.06 deleterious(0.01) benign(0.002) TCGA-EB-A5SG-06 1 70225987 70225987 C T LRRC7 Missense_Mutation p.L34F 0.09 deleterious(0) probably_damaging(0.997) TCGA-EB-A5SG-06 1 85564319 85564319 A G WDR63 Missense_Mutation p.H486R 0.11 deleterious(0.02) possibly_damaging(0.824) TCGA-EB-A5SG-06 1 981877 981877 C T AGRN Silent p.L1004L 0.25 TCGA-EB-A5SG-06 20 16354929 16354929 G A KIF16B Missense_Mutation p.S1108L 0.08 tolerated_low_confidence(0.12) possibly_damaging(0.476) TCGA-EB-A5SG-06 20 31657762 31657762 G A BPIFB3 Splice_Site p.X406_splice 0.12 TCGA-EB-A5SG-06 20 36869848 36869848 G A KIAA1755 Missense_Mutation p.P229S 0.17 tolerated(0.89) benign(0.004) TCGA-EB-A5SG-06 20 44670118 44670118 C T SLC12A5 Silent p.F358F 0.10 TCGA-EB-A5SG-06 20 49458308 49458308 C T BCAS4 Silent p.F120F 0.10 TCGA-EB-A5SG-06 21 41447001 41447001 C T DSCAM Silent p.R1617R 0.10 TCGA-EB-A5SG-06 21 41447002 41447002 C T DSCAM Missense_Mutation p.R1617Q 0.10 deleterious(0) possibly_damaging(0.627) TCGA-EB-A5SG-06 21 41710036 41710036 G A DSCAM Missense_Mutation p.T592I 0.06 tolerated(0.1) possibly_damaging(0.507) TCGA-EB-A5SG-06 21 43711742 43711742 C T ABCG1 Silent p.I555I 0.11 TCGA-EB-A5SG-06 21 45810877 45810877 G A TRPM2 Missense_Mutation p.S470N 0.14 deleterious(0) probably_damaging(0.933) TCGA-EB-A5SG-06 21 45950945 45950945 C T TSPEAR Missense_Mutation p.R205K 0.12 tolerated(0.17) benign(0.135) TCGA-EB-A5SG-06 21 46696962 46696962 G A POFUT2 Silent p.I267I 0.16 TCGA-EB-A5SG-06 22 19171090 19171090 G A CLTCL1 Missense_Mutation p.A1547V 0.21 tolerated(0.37) benign(0.005) TCGA-EB-A5SG-06 22 21150466 21150466 C T PI4KA Missense_Mutation p.E749K 0.17 deleterious(0) probably_damaging(0.988) TCGA-EB-A5SG-06 22 24898472 24898472 C T UPB1 Intron 0.10 TCGA-EB-A5SG-06 22 26423485 26423485 C T MYO18B Silent p.I2515I 0.20 TCGA-EB-A5SG-06 22 37524694 37524694 G A IL2RB Silent p.F366F 0.28 TCGA-EB-A5SG-06 22 38041380 38041380 C T SH3BP1 Missense_Mutation p.P263S 0.13 tolerated(0.05) benign(0.074) TCGA-EB-A5SG-06 22 38934372 38934372 C A DMC1 Missense_Mutation p.G235C 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 22 40366957 40366957 G T GRAP2 Missense_Mutation p.D288Y 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 22 41257305 41257305 C T DNAJB7 Missense_Mutation p.G232S 0.26 tolerated(0.16) benign(0.044) TCGA-EB-A5SG-06 22 41973927 41973927 C T PMM1 Missense_Mutation p.G184E 0.36 deleterious(0.02) possibly_damaging(0.794) TCGA-EB-A5SG-06 22 44892893 44892893 G A LDOC1L Missense_Mutation p.R182W 0.36 deleterious(0.02) benign(0.333) TCGA-EB-A5SG-06 22 46346011 46346011 C T WNT7B Silent p.V29V 0.13 TCGA-EB-A5SG-06 2 102957138 102957138 C T IL1RL1 Missense_Mutation p.L154F 0.09 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 2 112592422 112592422 A G ANAPC1 Missense_Mutation p.Y715H 0.20 tolerated(0.27) possibly_damaging(0.862) TCGA-EB-A5SG-06 2 112686787 112686787 T A MERTK Nonsense_Mutation p.L51* 0.13 TCGA-EB-A5SG-06 2 118583061 118583061 C T DDX18 Silent p.F469F 0.10 TCGA-EB-A5SG-06 2 119739964 119739964 G A MARCO Silent p.L347L 0.13 TCGA-EB-A5SG-06 2 128179007 128179007 C T PROC Silent p.F73F 0.08 TCGA-EB-A5SG-06 2 135920326 135920326 G A RAB3GAP1 Missense_Mutation p.E799K 0.18 tolerated(0.05) possibly_damaging(0.838) TCGA-EB-A5SG-06 2 149226605 149226605 C T MBD5 Missense_Mutation p.P365S 0.10 deleterious(0.01) possibly_damaging(0.803) TCGA-EB-A5SG-06 2 155711355 155711355 C T KCNJ3 Missense_Mutation p.H346Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 2 160605324 160605324 C T MARCH7 Missense_Mutation p.P508L 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-EB-A5SG-06 2 162696385 162696385 G A SLC4A10 Missense_Mutation p.D122N 0.11 deleterious(0.02) possibly_damaging(0.505) TCGA-EB-A5SG-06 2 166003297 166003297 C T SCN3A Missense_Mutation p.M541I 0.14 tolerated(0.73) benign(0.001) TCGA-EB-A5SG-06 2 179427377 179427377 C T TTN Missense_Mutation p.E27828K 0.10 TCGA-EB-A5SG-06 2 201474026 201474026 A C AOX1 Intron 0.11 TCGA-EB-A5SG-06 2 207827333 207827333 G A CPO Missense_Mutation p.E258K 0.16 deleterious(0.01) benign(0.35) TCGA-EB-A5SG-06 2 215812177 215812177 G A ABCA12 Missense_Mutation p.A2403V 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 2 215843182 215843182 C T ABCA12 Silent p.L1662L 0.14 TCGA-EB-A5SG-06 2 219855672 219855672 G A CRYBA2 Silent p.F116F 0.14 TCGA-EB-A5SG-06 2 220408029 220408029 C A CHPF Nonsense_Mutation p.E78* 0.09 TCGA-EB-A5SG-06 2 227942690 227942690 C T COL4A4 Missense_Mutation p.G636D 0.12 probably_damaging(0.989) TCGA-EB-A5SG-06 2 231742193 231742193 C T ITM2C Silent p.L214L 0.13 TCGA-EB-A5SG-06 2 234346951 234346951 G T DGKD Missense_Mutation p.K337N 0.09 deleterious(0.02) probably_damaging(0.983) TCGA-EB-A5SG-06 2 239169512 239169512 G A PER2 Missense_Mutation p.S500F 0.14 deleterious(0) probably_damaging(0.987) TCGA-EB-A5SG-06 2 24483983 24483983 G A ITSN2 Missense_Mutation p.H892Y 0.10 tolerated(1) unknown(0) TCGA-EB-A5SG-06 2 27165450 27165450 C T DPYSL5 Silent p.F424F 0.08 TCGA-EB-A5SG-06 2 27373233 27373233 G A TCF23 Silent p.K155K 0.10 TCGA-EB-A5SG-06 2 27800747 27800747 C T C2orf16 Silent p.L436L 0.07 TCGA-EB-A5SG-06 2 32476105 32476105 G A NLRC4 Silent p.I276I 0.12 TCGA-EB-A5SG-06 2 39213377 39213377 G A SOS1 Missense_Mutation p.S1197L 0.12 tolerated_low_confidence(0.13) benign(0.011) TCGA-EB-A5SG-06 2 58315490 58315490 T G VRK2 Missense_Mutation p.V120G 0.08 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SG-06 2 71651808 71651808 C T ZNF638 Missense_Mutation p.P1518L 0.09 tolerated(0.46) benign(0.125) TCGA-EB-A5SG-06 2 80529798 80529798 C T LRRTM1 Missense_Mutation p.D383N 0.22 tolerated(0.59) benign(0.038) TCGA-EB-A5SG-06 2 90260089 90260089 A G IGKV1D-8 Silent p.K64K 0.16 TCGA-EB-A5SG-06 3 10146064 10146064 C T FANCD2OS Missense_Mutation p.R132K 0.14 tolerated(1) benign(0) TCGA-EB-A5SG-06 3 113002394 113002394 G C BOC Silent p.L856L 0.17 TCGA-EB-A5SG-06 3 121605305 121605305 C T EAF2 3'UTR 0.18 TCGA-EB-A5SG-06 3 121707234 121707234 C T ILDR1 Missense_Mutation p.G541R 0.10 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SG-06 3 1414548 1414548 G A CNTN6 Silent p.R565R 0.05 TCGA-EB-A5SG-06 3 151055765 151055765 T A P2RY12 Missense_Mutation p.N290I 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 3 16250049 16250049 G A GALNT15 Nonsense_Mutation p.W317* 0.12 TCGA-EB-A5SG-06 3 179322377 179322377 T C MRPL47 Silent p.R12R 0.13 TCGA-EB-A5SG-06 3 183823942 183823942 C T HTR3E Silent p.L344L 0.14 TCGA-EB-A5SG-06 3 184075410 184075410 C T CLCN2 Missense_Mutation p.G257E 0.21 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SG-06 3 189038588 189038588 C T TPRG1 Silent p.A269A 0.18 TCGA-EB-A5SG-06 3 35786040 35786040 C T ARPP21 Intron 0.14 TCGA-EB-A5SG-06 3 38908950 38908950 C T SCN11A Splice_Site p.X1272_splice 0.14 TCGA-EB-A5SG-06 3 39230323 39230323 G A XIRP1 Missense_Mutation p.S205F 0.11 deleterious(0.01) probably_damaging(0.921) TCGA-EB-A5SG-06 3 47374649 47374649 C T KLHL18 Silent p.V201V 0.19 TCGA-EB-A5SG-06 3 48266136 48266136 G A CAMP Missense_Mutation p.R121K 0.14 tolerated(1) benign(0.003) TCGA-EB-A5SG-06 3 48622173 48622173 C T COL7A1 Silent p.G1347G 0.16 TCGA-EB-A5SG-06 3 49737164 49737164 C T RNF123 Missense_Mutation p.L315F 0.12 deleterious(0.01) possibly_damaging(0.478) TCGA-EB-A5SG-06 3 49932731 49932731 G A MST1R Missense_Mutation p.S1047F 0.19 deleterious(0.02) benign(0.25) TCGA-EB-A5SG-06 3 53842755 53842755 C T CACNA1D Silent p.F1963F 0.17 TCGA-EB-A5SG-06 3 60522612 60522612 C T FHIT Silent p.R28R 0.15 TCGA-EB-A5SG-06 3 68055846 68055846 C T FAM19A1 Missense_Mutation p.S26F 0.15 tolerated(0.23) benign(0.205) TCGA-EB-A5SG-06 3 77147193 77147193 C T ROBO2 Silent p.P46P 0.15 TCGA-EB-A5SG-06 3 97731240 97731240 C T GABRR3 RNA 0.13 TCGA-EB-A5SG-06 3 97983156 97983156 C T OR5H6 Nonsense_Mutation p.Q10* 0.07 TCGA-EB-A5SG-06 4 100131402 100131402 C T ADH6 Missense_Mutation p.G135E 0.22 deleterious(0) probably_damaging(0.989) TCGA-EB-A5SG-06 4 10445648 10445648 G A ZNF518B Missense_Mutation p.P769S 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-EB-A5SG-06 4 114823932 114823932 G A ARSJ Missense_Mutation p.S433F 0.11 tolerated(0.05) probably_damaging(0.992) TCGA-EB-A5SG-06 4 126239895 126239895 G A FAT4 Missense_Mutation p.A777T 0.06 probably_damaging(1) TCGA-EB-A5SG-06 4 134072586 134072586 C T PCDH10 Silent p.L431L 0.08 TCGA-EB-A5SG-06 4 134084242 134084242 C T PCDH10 Missense_Mutation p.R970C 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5SG-06 4 141789475 141789475 C T RNF150 Silent p.E419E 0.08 TCGA-EB-A5SG-06 4 17910842 17910842 G A LCORL Missense_Mutation p.S186L 0.08 tolerated(0.07) probably_damaging(0.942) TCGA-EB-A5SG-06 4 37846151 37846151 C T PGM2 Missense_Mutation p.P296S 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 4 42509070 42509070 G A ATP8A1 Silent p.I683I 0.06 TCGA-EB-A5SG-06 4 55976644 55976644 C T KDR Missense_Mutation p.G394E 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 4 70080454 70080454 G A UGT2B11 5'Flank 0.14 TCGA-EB-A5SG-06 4 70823220 70823220 C T CSN2 Silent p.L149L 0.24 TCGA-EB-A5SG-06 4 71024221 71024221 C T C4orf40 Silent p.F84F 0.07 TCGA-EB-A5SG-06 4 71024222 71024222 C T C4orf40 Missense_Mutation p.P85S 0.07 tolerated(0.28) benign(0.096) TCGA-EB-A5SG-06 4 73951085 73951085 G A ANKRD17 Missense_Mutation p.S2347L 0.10 benign(0.043) TCGA-EB-A5SG-06 4 74719578 74719578 G A PF4V1 Missense_Mutation p.S60N 0.09 tolerated(0.45) benign(0.115) TCGA-EB-A5SG-06 4 75312457 75312457 G A AREG Missense_Mutation p.E90K 0.06 deleterious(0.01) possibly_damaging(0.81) TCGA-EB-A5SG-06 4 8465746 8465746 T G TRMT44 Missense_Mutation p.F413C 0.11 deleterious(0) probably_damaging(0.95) TCGA-EB-A5SG-06 4 860793 860793 G A GAK Silent p.A941A 0.09 TCGA-EB-A5SG-06 4 87728918 87728918 C T PTPN13 Silent p.I2322I 0.12 TCGA-EB-A5SG-06 4 9784136 9784136 C T DRD5 Silent p.V161V 0.09 TCGA-EB-A5SG-06 5 101815988 101815988 T A SLCO6A1 Missense_Mutation p.K170I 0.14 deleterious(0.01) benign(0.013) TCGA-EB-A5SG-06 5 126783338 126783338 C T MEGF10 Missense_Mutation p.P940S 0.12 tolerated(0.41) benign(0.007) TCGA-EB-A5SG-06 5 133914780 133914780 G T JADE2 Missense_Mutation p.V716L 0.12 tolerated(0.29) benign(0.001) TCGA-EB-A5SG-06 5 13824412 13824412 G A DNAH5 Silent p.L2159L 0.10 TCGA-EB-A5SG-06 5 13891128 13891128 T C DNAH5 Missense_Mutation p.Q845R 0.08 benign(0) TCGA-EB-A5SG-06 5 140256892 140256892 A T PCDHA12 Missense_Mutation p.Q612L 0.12 tolerated_low_confidence(0.26) benign(0.064) TCGA-EB-A5SG-06 5 140530093 140530093 A T PCDHB6 Silent p.L85L 0.06 TCGA-EB-A5SG-06 5 140740132 140740132 G A PCDHGB2 Missense_Mutation p.E144K 0.06 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.10 deleterious(0.04) benign(0.008) TCGA-EB-A5SG-06 5 145317513 145317513 G A SH3RF2 Missense_Mutation p.D8N 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-EB-A5SG-06 5 149618263 149618263 C T CAMK2A Missense_Mutation p.V356M 0.25 tolerated_low_confidence(0.06) benign(0.125) TCGA-EB-A5SG-06 5 154393573 154393573 G A KIF4B Missense_Mutation p.D52N 0.15 tolerated(0.15) probably_damaging(1) TCGA-EB-A5SG-06 5 156592675 156592675 C T FAM71B Missense_Mutation p.E169K 0.11 deleterious(0) possibly_damaging(0.657) TCGA-EB-A5SG-06 5 156916114 156916114 C T ADAM19 Missense_Mutation p.R774Q 0.17 tolerated(0.08) probably_damaging(0.993) TCGA-EB-A5SG-06 5 160031010 160031010 C T ATP10B Missense_Mutation p.D1067N 0.08 tolerated(0.05) benign(0.077) TCGA-EB-A5SG-06 5 161580383 161580383 G A GABRG2 3'UTR 0.11 TCGA-EB-A5SG-06 5 162898386 162898386 A C HMMR Missense_Mutation p.Q189H 0.08 deleterious(0.04) benign(0.117) TCGA-EB-A5SG-06 5 178408800 178408800 G A GRM6 Missense_Mutation p.S831F 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-EB-A5SG-06 5 178506291 178506291 C T ZNF354C Silent p.T286T 0.07 TCGA-EB-A5SG-06 5 179564974 179564974 C T RASGEF1C Missense_Mutation p.E27K 0.16 tolerated(0.36) benign(0.019) TCGA-EB-A5SG-06 5 35014121 35014121 A C AGXT2 Missense_Mutation p.F356C 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5SG-06 5 42719616 42719616 T A GHR 3'UTR 0.10 TCGA-EB-A5SG-06 5 635648 635648 C T CEP72 Missense_Mutation p.P285S 0.08 tolerated(0.14) benign(0.002) TCGA-EB-A5SG-06 5 71756610 71756610 G A ZNF366 Silent p.I238I 0.14 TCGA-EB-A5SG-06 5 78338188 78338188 G A DMGDH Missense_Mutation p.P371S 0.15 deleterious(0) probably_damaging(0.992) TCGA-EB-A5SG-06 5 96253237 96253237 G A ERAP2 Silent p.T937T 0.16 TCGA-EB-A5SG-06 6 107232089 107232089 C T MIR587 RNA 0.10 TCGA-EB-A5SG-06 6 132938776 132938776 C T TAAR2 Missense_Mutation p.G190D 0.10 tolerated(0.88) benign(0.358) TCGA-EB-A5SG-06 6 152832211 152832211 C T SYNE1 Missense_Mutation p.D113N 0.12 probably_damaging(0.96) TCGA-EB-A5SG-06 6 153043126 153043126 C T MYCT1 Missense_Mutation p.S149F 0.09 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SG-06 6 26407991 26407991 C T BTN3A1 Nonsense_Mutation p.Q176* 0.27 TCGA-EB-A5SG-06 6 31728487 31728487 G A MSH5 Missense_Mutation p.M611I 0.29 deleterious(0.01) possibly_damaging(0.46) TCGA-EB-A5SG-06 6 32024404 32024404 C T TNXB Missense_Mutation p.G2701D 0.21 benign(0.006) TCGA-EB-A5SG-06 6 38690828 38690828 G A DNAH8 5'Flank 0.25 TCGA-EB-A5SG-06 6 42237025 42237025 C T TRERF1 Missense_Mutation p.A102T 0.04 tolerated_low_confidence(0.99) benign(0.014) TCGA-EB-A5SG-06 6 44121814 44121814 C T TMEM63B Silent p.F705F 0.08 TCGA-EB-A5SG-06 6 54735396 54735396 G A FAM83B Missense_Mutation p.G118S 0.21 tolerated(0.6) benign(0.006) TCGA-EB-A5SG-06 6 7310170 7310170 C T SSR1 Missense_Mutation p.E58K 0.18 tolerated(0.21) possibly_damaging(0.596) TCGA-EB-A5SG-06 7 115614248 115614248 G A TFEC Silent p.D81D 0.06 TCGA-EB-A5SG-06 7 141672517 141672517 G A TAS2R38 Missense_Mutation p.H325Y 0.09 tolerated(0.43) benign(0.001) TCGA-EB-A5SG-06 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A5SG-06 7 142247275 142247275 C T TRBV7-3 Missense_Mutation p.G61S 0.05 TCGA-EB-A5SG-06 7 150163900 150163900 C T GIMAP8 Silent p.S38S 0.11 TCGA-EB-A5SG-06 7 150174357 150174357 C T GIMAP8 Missense_Mutation p.S496F 0.15 tolerated(0.12) benign(0.151) TCGA-EB-A5SG-06 7 150439501 150439501 G A GIMAP5 Missense_Mutation p.D92N 0.08 tolerated(0.12) possibly_damaging(0.5) TCGA-EB-A5SG-06 7 2771220 2771220 G A GNA12 Silent p.S247S 0.16 TCGA-EB-A5SG-06 7 43351456 43351456 A G HECW1 Missense_Mutation p.Y41C 0.08 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EB-A5SG-06 7 8099816 8099816 A C GLCCI1 Missense_Mutation p.I302L 0.06 tolerated(1) benign(0.046) TCGA-EB-A5SG-06 7 82545691 82545691 G A PCLO Nonsense_Mutation p.Q3871* 0.03 TCGA-EB-A5SG-06 7 86394656 86394656 G A GRM3 Silent p.G65G 0.11 TCGA-EB-A5SG-06 7 97770818 97770818 C T LMTK2 Missense_Mutation p.S114L 0.07 deleterious(0.01) benign(0.434) TCGA-EB-A5SG-06 8 101232634 101232634 C T SPAG1 Nonsense_Mutation p.Q555* 0.11 TCGA-EB-A5SG-06 8 106810973 106810973 C T ZFPM2 Missense_Mutation p.S254F 0.12 deleterious(0.03) probably_damaging(0.966) TCGA-EB-A5SG-06 8 106813949 106813949 G A ZFPM2 Missense_Mutation p.G547R 0.07 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 8 10683697 10683697 G A SOX7 Missense_Mutation p.S120F 0.21 deleterious(0) possibly_damaging(0.667) TCGA-EB-A5SG-06 8 110592286 110592286 G A SYBU Intron 0.11 TCGA-EB-A5SG-06 8 113277661 113277661 C T CSMD3 Missense_Mutation p.G3223R 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-EB-A5SG-06 8 116616206 116616206 G A TRPS1 Silent p.L664L 0.12 TCGA-EB-A5SG-06 8 139601575 139601575 G A COL22A1 Missense_Mutation p.P1601L 0.14 unknown(0) TCGA-EB-A5SG-06 8 143784537 143784537 G A LY6K Silent p.A82A 0.12 TCGA-EB-A5SG-06 8 144804368 144804368 G C MAPK15 Missense_Mutation p.V528L 0.24 deleterious(0.02) benign(0.036) TCGA-EB-A5SG-06 8 145535878 145535878 C T HSF1 Missense_Mutation p.P364S 0.17 tolerated(0.19) benign(0.005) TCGA-EB-A5SG-06 8 145661735 145661735 G A TONSL Missense_Mutation p.P694L 0.09 deleterious(0.04) possibly_damaging(0.804) TCGA-EB-A5SG-06 8 145722746 145722746 G A PPP1R16A Missense_Mutation p.E57K 0.17 tolerated(0.67) benign(0.001) TCGA-EB-A5SG-06 8 19362901 19362901 C T CSGALNACT1 Missense_Mutation p.D149N 0.06 tolerated(0.65) possibly_damaging(0.702) TCGA-EB-A5SG-06 8 25766067 25766067 A T EBF2 Missense_Mutation p.F186I 0.10 deleterious(0) possibly_damaging(0.852) TCGA-EB-A5SG-06 8 3008995 3008995 G A CSMD1 Silent p.I1985I 0.10 TCGA-EB-A5SG-06 8 3216757 3216757 C T CSMD1 Missense_Mutation p.G1074E 0.06 probably_damaging(1) TCGA-EB-A5SG-06 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.10 tolerated(0.85) benign(0.006) TCGA-EB-A5SG-06 8 79627472 79627472 C T ZC2HC1A Nonsense_Mutation p.R241* 0.24 TCGA-EB-A5SG-06 8 87235215 87235215 T C SLC7A13 Missense_Mutation p.E268G 0.08 deleterious(0) probably_damaging(0.975) TCGA-EB-A5SG-06 8 92378928 92378928 C T SLC26A7 Missense_Mutation p.L537F 0.12 tolerated(0.65) benign(0.004) TCGA-EB-A5SG-06 9 107288828 107288828 G A OR13C4 Silent p.I221I 0.11 TCGA-EB-A5SG-06 9 116135985 116135985 A C HDHD3 Missense_Mutation p.L217R 0.09 tolerated(0.5) benign(0.049) TCGA-EB-A5SG-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.09 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 9 34658540 34658540 C T IL11RA Silent p.L224L 0.13 TCGA-EB-A5SG-06 9 71628885 71628885 C T PRKACG Missense_Mutation p.D42N 0.14 tolerated(0.16) benign(0.071) TCGA-EB-A5SG-06 9 78774027 78774027 G A PCSK5 Missense_Mutation p.G520E 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A5SG-06 X 109924753 109924753 C T CHRDL1 Silent p.E371E 0.14 TCGA-EB-A5SG-06 X 12939520 12939520 G A TLR8 Missense_Mutation p.M787I 0.11 tolerated(1) benign(0.001) TCGA-EB-A5SG-06 X 132440125 132440125 A C GPC4 Missense_Mutation p.M312R 0.12 deleterious(0) probably_damaging(0.986) TCGA-EB-A5SG-06 X 135593638 135593638 T C HTATSF1 Silent p.G578G 0.08 TCGA-EB-A5SG-06 X 150842500 150842500 C T PASD1 Missense_Mutation p.P673S 0.10 tolerated(0.07) possibly_damaging(0.803) TCGA-EB-A5SG-06 X 151303844 151303844 A C MAGEA10 Silent p.P83P 0.14 TCGA-EB-A5SG-06 X 153416405 153416405 C T OPN1LW Silent p.G130G 0.12 TCGA-EB-A5SG-06 X 30254637 30254637 C T MAGEB3 Missense_Mutation p.P199L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5SG-06 X 5811151 5811151 C T NLGN4X Missense_Mutation p.D720N 0.11 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-EB-A5SG-06 X 70149553 70149553 G A SLC7A3 Missense_Mutation p.L99F 0.21 deleterious(0.05) possibly_damaging(0.766) TCGA-EB-A5SG-06 X 75004287 75004287 C T MAGEE2 Nonsense_Mutation p.W200* 0.12 TCGA-EB-A5SH-06 10 129905305 129905305 T C MKI67 Missense_Mutation p.H1600R 0.08 tolerated(0.12) benign(0.039) TCGA-EB-A5SH-06 10 134523902 134523902 A G INPP5A Missense_Mutation p.T197A 0.45 tolerated(0.15) benign(0.072) TCGA-EB-A5SH-06 11 117076907 117076907 A T PCSK7 Missense_Mutation p.S722T 0.13 deleterious_low_confidence(0) benign(0.242) TCGA-EB-A5SH-06 11 48267357 48267357 C A OR4X2 Silent p.S234S 0.42 TCGA-EB-A5SH-06 11 67925597 67925597 T A SUV420H1 Missense_Mutation p.N739I 0.06 deleterious(0.01) benign(0.323) TCGA-EB-A5SH-06 11 68359131 68359131 G A PPP6R3 Missense_Mutation p.E625K 0.11 tolerated(0.07) probably_damaging(0.994) TCGA-EB-A5SH-06 11 68703735 68703735 G T IGHMBP2 Missense_Mutation p.R596M 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A5SH-06 11 68703893 68703893 G T IGHMBP2 Nonsense_Mutation p.E649* 0.09 TCGA-EB-A5SH-06 11 77835256 77835256 G C ALG8 Missense_Mutation p.T60S 0.03 tolerated(0.05) possibly_damaging(0.734) TCGA-EB-A5SH-06 12 102158806 102158806 G A GNPTAB Missense_Mutation p.T630I 0.29 tolerated(0.18) benign(0.003) TCGA-EB-A5SH-06 12 10783871 10783871 C A STYK1 Missense_Mutation p.W75L 0.18 tolerated(0.66) benign(0.002) TCGA-EB-A5SH-06 12 53553931 53553931 C T CSAD Missense_Mutation p.R407H 0.29 tolerated(0.95) probably_damaging(0.999) TCGA-EB-A5SH-06 12 70954675 70954675 T G PTPRB Missense_Mutation p.N1403T 0.28 deleterious(0.01) possibly_damaging(0.826) TCGA-EB-A5SH-06 12 70954677 70954677 C T PTPRB Silent p.R1402R 0.28 TCGA-EB-A5SH-06 12 70956853 70956853 C G PTPRB Missense_Mutation p.E1313D 0.30 tolerated(0.26) benign(0.02) TCGA-EB-A5SH-06 14 103941514 103941514 T C MARK3 Silent p.I483I 0.15 TCGA-EB-A5SH-06 14 39627505 39627505 A C TRAPPC6B Missense_Mutation p.L84R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SH-06 14 52477677 52477677 G T NID2 Silent p.A1213A 0.11 TCGA-EB-A5SH-06 14 70924319 70924319 C A ADAM21 Missense_Mutation p.Q35K 0.12 deleterious(0.01) benign(0.115) TCGA-EB-A5SH-06 14 72936747 72936747 G A RGS6 Silent p.A164A 0.19 TCGA-EB-A5SH-06 14 99876485 99876485 C T SETD3 Intron 0.24 TCGA-EB-A5SH-06 15 54586172 54586172 C A UNC13C Missense_Mutation p.H1300N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EB-A5SH-06 15 57731669 57731669 G A CGNL1 Missense_Mutation p.S491N 0.33 tolerated(0.7) benign(0.002) TCGA-EB-A5SH-06 15 88679759 88679759 C T NTRK3 Missense_Mutation p.G235E 0.13 deleterious(0) probably_damaging(0.99) TCGA-EB-A5SH-06 16 24202490 24202490 G A PRKCB Missense_Mutation p.R601Q 0.22 deleterious(0.05) possibly_damaging(0.821) TCGA-EB-A5SH-06 16 66919782 66919782 C A PDP2 3'UTR 0.41 TCGA-EB-A5SH-06 17 2595709 2595709 G A CLUH Missense_Mutation p.A1130V 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A5SH-06 18 28916432 28916432 T C DSG1 Missense_Mutation p.V374A 0.20 deleterious(0) probably_damaging(0.996) TCGA-EB-A5SH-06 18 48190290 48190290 C T MAPK4 5'UTR 0.19 TCGA-EB-A5SH-06 19 19735015 19735015 C T LPAR2 3'UTR 0.37 TCGA-EB-A5SH-06 19 22154697 22154697 G - ZNF208 Frame_Shift_Del p.H1047Ifs*87 0.19 TCGA-EB-A5SH-06 19 43529170 43529170 G T PSG11 Missense_Mutation p.Q35K 0.13 deleterious(0.03) possibly_damaging(0.532) TCGA-EB-A5SH-06 19 43680070 43680070 C T PSG5 Missense_Mutation p.D221N 0.23 tolerated(1) benign(0.075) TCGA-EB-A5SH-06 19 51768619 51768619 C G SIGLECL1 Intron 0.18 TCGA-EB-A5SH-06 19 54754879 54754879 T G LILRB5 Intron 0.11 TCGA-EB-A5SH-06 19 58187713 58187713 G T ZSCAN4 Missense_Mutation p.R67M 0.19 deleterious(0.01) possibly_damaging(0.478) TCGA-EB-A5SH-06 19 58772365 58772365 G T ZNF544 Missense_Mutation p.Q131H 0.24 tolerated(0.1) benign(0.002) TCGA-EB-A5SH-06 19 59060877 59060877 A G TRIM28 Silent p.P614P 0.24 TCGA-EB-A5SH-06 19 8841458 8841458 C G OR2Z1 Nonsense_Mutation p.S23* 0.08 TCGA-EB-A5SH-06 19 8841570 8841570 C T OR2Z1 Silent p.Y60Y 0.09 TCGA-EB-A5SH-06 19 8841638 8841638 C T OR2Z1 Missense_Mutation p.S83L 0.08 tolerated(0.31) benign(0.02) TCGA-EB-A5SH-06 19 8841900 8841900 C A OR2Z1 Silent p.A170A 0.15 TCGA-EB-A5SH-06 1 114397667 114397667 G T PTPN22 Missense_Mutation p.T182N 0.43 tolerated(0.12) possibly_damaging(0.716) TCGA-EB-A5SH-06 1 11708839 11708839 C G FBXO2 Missense_Mutation p.R268P 0.19 tolerated(0.14) probably_damaging(0.991) TCGA-EB-A5SH-06 1 14075930 14075930 G A PRDM2 Silent p.E153E 0.06 TCGA-EB-A5SH-06 1 158637678 158637678 C T SPTA1 Missense_Mutation p.E670K 0.25 tolerated(1) benign(0.001) TCGA-EB-A5SH-06 1 166960634 166960634 T A MAEL Missense_Mutation p.L82Q 0.13 tolerated(0.24) benign(0.003) TCGA-EB-A5SH-06 1 179620045 179620045 G A TDRD5 Missense_Mutation p.C615Y 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A5SH-06 1 204242842 204242842 G A PLEKHA6 Missense_Mutation p.T5I 0.22 deleterious(0.01) benign(0.082) TCGA-EB-A5SH-06 1 22973880 22973880 C G C1QC Nonsense_Mutation p.Y114* 0.46 TCGA-EB-A5SH-06 1 240256802 240256802 C A FMN2 Missense_Mutation p.P465T 0.10 unknown(0) TCGA-EB-A5SH-06 1 240371445 240371445 C T FMN2 Silent p.P1111P 0.17 TCGA-EB-A5SH-06 1 247712413 247712413 A C GCSAML 5'UTR 0.12 TCGA-EB-A5SH-06 1 44686326 44686326 A C DMAP1 3'UTR 0.16 TCGA-EB-A5SH-06 1 57431546 57431546 T A C8B Missense_Mutation p.S26C 0.23 tolerated(0.18) benign(0.006) TCGA-EB-A5SH-06 1 9990459 9990460 - T LZIC Frame_Shift_Ins p.*191Mfs*8 0.28 TCGA-EB-A5SH-06 20 19665842 19665842 C A SLC24A3 Silent p.P387P 0.20 TCGA-EB-A5SH-06 20 23545513 23545513 C T CST9L 3'UTR 0.60 TCGA-EB-A5SH-06 20 24524121 24524121 G T SYNDIG1 Missense_Mutation p.D130Y 0.57 deleterious(0) probably_damaging(0.982) TCGA-EB-A5SH-06 20 50140170 50140170 G A NFATC2 Nonsense_Mutation p.Q204* 0.35 TCGA-EB-A5SH-06 21 34861655 34861655 G T DNAJC28 Missense_Mutation p.L16M 0.16 tolerated(0.06) benign(0.031) TCGA-EB-A5SH-06 21 34955849 34955849 G A DONSON Silent p.I303I 0.22 TCGA-EB-A5SH-06 21 41300918 41300918 A G PCP4 Missense_Mutation p.K24R 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-EB-A5SH-06 21 43542949 43542949 C T UMODL1 Missense_Mutation p.P1074S 0.22 tolerated(0.33) possibly_damaging(0.803) TCGA-EB-A5SH-06 22 41075545 41075545 C G MCHR1 Missense_Mutation p.N32K 0.18 tolerated_low_confidence(0.28) benign(0.003) TCGA-EB-A5SH-06 22 41753382 41753382 T C ZC3H7B Silent p.G961G 0.21 TCGA-EB-A5SH-06 2 158991470 158991470 A G UPP2 3'UTR 0.18 TCGA-EB-A5SH-06 2 179470323 179470323 T C TTN Missense_Mutation p.E17900G 0.11 TCGA-EB-A5SH-06 2 179537370 179537370 G T TTN Missense_Mutation p.P11616Q 0.30 TCGA-EB-A5SH-06 2 20205600 20205600 A G MATN3 Missense_Mutation p.M232T 0.24 tolerated(0.35) benign(0.005) TCGA-EB-A5SH-06 2 207041072 207041072 G A GPR1 Silent p.N300N 0.20 TCGA-EB-A5SH-06 2 226447369 226447369 G C NYAP2 Silent p.S412S 0.17 TCGA-EB-A5SH-06 2 231109750 231109750 G T SP140 Nonsense_Mutation p.G207* 0.33 TCGA-EB-A5SH-06 2 39664094 39664094 G C MAP4K3 Missense_Mutation p.P12R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5SH-06 2 43926926 43926926 C A PLEKHH2 Missense_Mutation p.Q277K 0.37 tolerated(0.5) benign(0) TCGA-EB-A5SH-06 2 6990085 6990085 G A CMPK2 Missense_Mutation p.R416W 0.12 deleterious(0) possibly_damaging(0.693) TCGA-EB-A5SH-06 3 168833460 168833460 G T MECOM Missense_Mutation p.Q611K 0.30 tolerated(0.8) benign(0.138) TCGA-EB-A5SH-06 3 196083484 196083484 G A UBXN7 3'UTR 0.38 TCGA-EB-A5SH-06 3 38593010 38593010 G A SCN5A Missense_Mutation p.S1618F 0.31 deleterious(0) possibly_damaging(0.782) TCGA-EB-A5SH-06 3 41266125 41266125 C A CTNNB1 Missense_Mutation p.T41N 0.26 deleterious(0.03) probably_damaging(0.95) TCGA-EB-A5SH-06 3 65425655 65425655 G T MAGI1 Missense_Mutation p.P390Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A5SH-06 4 111539828 111539828 C G PITX2 Missense_Mutation p.R143P 0.70 deleterious(0) probably_damaging(1) TCGA-EB-A5SH-06 4 173150852 173150852 G A GALNTL6 Missense_Mutation p.D62N 0.11 tolerated(0.18) benign(0.012) TCGA-EB-A5SH-06 4 47408892 47408892 A G GABRB1 Silent p.K343K 0.22 TCGA-EB-A5SH-06 4 55592028 55592028 C G KIT Missense_Mutation p.S451C 0.91 deleterious(0) benign(0.431) TCGA-EB-A5SH-06 4 73161465 73161465 C A ADAMTS3 Missense_Mutation p.D877Y 0.81 deleterious(0) probably_damaging(0.992) TCGA-EB-A5SH-06 5 110730424 110730424 T A CAMK4 Missense_Mutation p.Y135N 0.32 deleterious(0.04) probably_damaging(0.992) TCGA-EB-A5SH-06 5 140557962 140557962 A G PCDHB8 Missense_Mutation p.E116G 0.22 deleterious_low_confidence(0.03) benign(0.041) TCGA-EB-A5SH-06 5 146752778 146752778 T C STK32A Missense_Mutation p.V275A 0.35 deleterious(0) benign(0.111) TCGA-EB-A5SH-06 5 159781846 159781846 C T C1QTNF2 Missense_Mutation p.G103E 0.23 deleterious(0) unknown(0) TCGA-EB-A5SH-06 5 160039894 160039894 G A ATP10B Missense_Mutation p.P898S 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-EB-A5SH-06 6 143074615 143074615 C T HIVEP2 Missense_Mutation p.E2324K 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-EB-A5SH-06 6 143081031 143081031 T A HIVEP2 Nonsense_Mutation p.R2132* 0.23 TCGA-EB-A5SH-06 6 143081032 143081032 A G HIVEP2 Silent p.P2131P 0.23 TCGA-EB-A5SH-06 6 155606317 155606317 C A TFB1M Missense_Mutation p.G214V 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A5SH-06 6 34256451 34256451 G T NUDT3 3'UTR 0.12 TCGA-EB-A5SH-06 6 34256561 34256561 G C NUDT3 Missense_Mutation p.S163C 0.13 deleterious_low_confidence(0.01) benign(0.21) TCGA-EB-A5SH-06 6 34256606 34256606 G C NUDT3 Nonsense_Mutation p.S148* 0.14 TCGA-EB-A5SH-06 6 35923164 35923164 G A SLC26A8 Missense_Mutation p.S666L 0.16 tolerated(0.09) possibly_damaging(0.745) TCGA-EB-A5SH-06 6 42227383 42227383 G T TRERF1 Silent p.R655R 0.10 TCGA-EB-A5SH-06 7 100958505 100958505 C A RABL5 Missense_Mutation p.E156D 0.31 tolerated(0.82) benign(0.001) TCGA-EB-A5SH-06 7 142659379 142659379 G A KEL 5'UTR 0.20 TCGA-EB-A5SH-06 7 146829394 146829394 A G CNTNAP2 Missense_Mutation p.T381A 0.23 tolerated(0.13) benign(0.017) TCGA-EB-A5SH-06 7 154684072 154684072 C T DPP6 Missense_Mutation p.T827I 0.23 tolerated(0.43) benign(0.106) TCGA-EB-A5SH-06 7 2108849 2108849 G A MAD1L1 Missense_Mutation p.R400W 0.23 deleterious(0) probably_damaging(0.975) TCGA-EB-A5SH-06 7 56128613 56128614 - CATT CCT6A Frame_Shift_Ins p.L444Ffs*16 0.29 TCGA-EB-A5SH-06 7 97922751 97922752 - TG BAIAP2L1 3'UTR 0.38 TCGA-EB-A5SH-06 8 132968066 132968066 T A EFR3A Silent p.P230P 0.12 TCGA-EB-A5SH-06 8 144998583 144998583 C G PLEC Missense_Mutation p.K1975N 0.28 unknown(0) TCGA-EB-A5SH-06 8 55534057 55534057 C A RP1 Silent p.T177T 0.15 TCGA-EB-A5SH-06 8 56270384 56270384 T G XKR4 Missense_Mutation p.L318R 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A5SH-06 9 112963752 112963752 C T C9orf152 Missense_Mutation p.G66R 0.32 tolerated(0.09) benign(0.139) TCGA-EB-A5SH-06 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.30 TCGA-EB-A5SH-06 9 43133229 43133229 C T ANKRD20A3 Splice_Site p.X68_splice 0.16 TCGA-EB-A5SH-06 9 79318636 79318636 C A PRUNE2 Missense_Mutation p.Q2631H 0.18 tolerated(0.18) benign(0.03) TCGA-EB-A5SH-06 9 84531589 84531589 C T SPATA31D5P RNA 0.33 TCGA-EB-A5SH-06 X 100656776 100656776 G T GLA Missense_Mutation p.L131I 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-EB-A5SH-06 X 102337096 102337096 C A NXF3 Intron 0.20 TCGA-EB-A5SH-06 X 106397398 106397398 T A NUP62CL Missense_Mutation p.Q91H 0.24 tolerated(0.05) benign(0.429) TCGA-EB-A5SH-06 X 111698455 111698455 C A ZCCHC16 Missense_Mutation p.H167N 0.27 tolerated(0.06) benign(0) TCGA-EB-A5SH-06 X 12728642 12728642 C T FRMPD4 Missense_Mutation p.A532V 0.21 tolerated(0.08) benign(0.034) TCGA-EB-A5SH-06 X 138678912 138678912 C A MCF2 Silent p.L767L 0.25 TCGA-EB-A5SH-06 X 17165594 17165594 C G REPS2 Missense_Mutation p.T658S 0.23 tolerated(0.35) possibly_damaging(0.885) TCGA-EB-A5SH-06 X 26157360 26157360 C A MAGEB18 Missense_Mutation p.S86R 0.24 tolerated(0.21) benign(0.012) TCGA-EB-A5SH-06 X 70613284 70613284 G A TAF1 Missense_Mutation p.R1082H 0.16 deleterious(0.04) benign(0.022) TCGA-EB-A5SH-06 X 77381339 77381339 C A PGK1 3'UTR 0.24 TCGA-EB-A5SH-06 X 80375311 80375311 T A HMGN5 Silent p.A7A 0.19 TCGA-EB-A5UL-06 10 103530212 103530212 G A FGF8 Silent p.F203F 0.26 TCGA-EB-A5UL-06 10 106015023 106015023 G A GSTO1 Missense_Mutation p.G46E 0.16 deleterious(0.02) possibly_damaging(0.53) TCGA-EB-A5UL-06 10 106037800 106037800 C T GSTO2 Missense_Mutation p.P98S 0.46 deleterious(0.03) possibly_damaging(0.846) TCGA-EB-A5UL-06 10 1175199 1175199 C T WDR37 Missense_Mutation p.P467L 0.28 tolerated(0.07) benign(0.059) TCGA-EB-A5UL-06 10 123239527 123239527 C T FGFR2 Silent p.L771L 0.18 TCGA-EB-A5UL-06 10 126715037 126715037 G A CTBP2 Missense_Mutation p.P431L 0.29 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-EB-A5UL-06 10 129906710 129906710 G A MKI67 Missense_Mutation p.P1132S 0.43 tolerated(0.13) possibly_damaging(0.489) TCGA-EB-A5UL-06 10 134622165 134622165 G T TTC40 Missense_Mutation p.F2636L 0.29 tolerated_low_confidence(0.76) benign(0.002) TCGA-EB-A5UL-06 10 134906683 134906683 A T GPR123 Intron 0.38 TCGA-EB-A5UL-06 10 17271935 17271935 G A VIM Missense_Mutation p.E172K 0.20 deleterious(0.03) probably_damaging(0.941) TCGA-EB-A5UL-06 10 27703008 27703008 C T PTCHD3 Missense_Mutation p.G58R 0.43 tolerated_low_confidence(0.2) probably_damaging(0.979) TCGA-EB-A5UL-06 10 3201173 3201173 G A PITRM1 Missense_Mutation p.P357S 0.15 deleterious(0) probably_damaging(0.98) TCGA-EB-A5UL-06 10 43606732 43606732 C T RET Silent p.A447A 0.19 TCGA-EB-A5UL-06 10 46999128 46999128 G A GPRIN2 Missense_Mutation p.R83Q 0.10 tolerated(1) benign(0.003) TCGA-EB-A5UL-06 10 46999656 46999656 C T GPRIN2 Missense_Mutation p.P259L 0.11 deleterious(0.02) benign(0.115) TCGA-EB-A5UL-06 10 55943354 55943354 C A PCDH15 Splice_Site p.X481_splice 0.20 TCGA-EB-A5UL-06 10 75277247 75277247 C A USP54 Silent p.G979G 0.07 TCGA-EB-A5UL-06 10 7842043 7842043 T G ATP5C1 Missense_Mutation p.V209G 0.16 deleterious(0) benign(0.205) TCGA-EB-A5UL-06 10 88718556 88718556 G A SNCG Silent p.K34K 0.18 TCGA-EB-A5UL-06 10 91177851 91177851 C T IFIT5 Nonsense_Mutation p.Q299* 0.38 TCGA-EB-A5UL-06 10 98145939 98145939 C T TLL2 Missense_Mutation p.G629E 0.34 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UL-06 11 103092762 103092762 C T DYNC2H1 Silent p.F3037F 0.33 TCGA-EB-A5UL-06 11 114453573 114453573 G A NXPE4 Silent p.T89T 0.25 TCGA-EB-A5UL-06 11 118245671 118245671 C T UBE4A Missense_Mutation p.P400S 0.20 tolerated(0.75) benign(0.324) TCGA-EB-A5UL-06 11 120169026 120169026 C T POU2F3 Missense_Mutation p.P64L 0.31 tolerated(0.26) benign(0.005) TCGA-EB-A5UL-06 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.21 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-EB-A5UL-06 11 18755128 18755128 G A PTPN5 Missense_Mutation p.S352F 0.25 deleterious(0) probably_damaging(0.986) TCGA-EB-A5UL-06 11 2190934 2190934 G A TH Silent p.F117F 0.21 TCGA-EB-A5UL-06 11 25071647 25071647 C T LUZP2 Missense_Mutation p.P277S 0.32 tolerated(0.78) benign(0.118) TCGA-EB-A5UL-06 11 31815594 31815594 C T PAX6 Missense_Mutation p.E265K 0.33 deleterious(0) probably_damaging(0.951) TCGA-EB-A5UL-06 11 46726603 46726603 C A ZNF408 Silent p.S451S 0.22 TCGA-EB-A5UL-06 11 46750213 46750213 G A F2 Splice_Site p.X433_splice 0.19 TCGA-EB-A5UL-06 11 46920197 46920197 G A LRP4 Silent p.F236F 0.22 TCGA-EB-A5UL-06 11 4903346 4903346 C A OR51T1 Missense_Mutation p.L100I 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A5UL-06 11 49208268 49208268 T C FOLH1 Silent p.E189E 0.07 TCGA-EB-A5UL-06 11 557449 557449 G A C11orf35 Silent p.A221A 0.50 TCGA-EB-A5UL-06 11 55873216 55873216 G A OR8H2 Missense_Mutation p.G233E 0.31 deleterious(0) possibly_damaging(0.658) TCGA-EB-A5UL-06 11 5730400 5730400 C T TRIM22 Missense_Mutation p.S340F 0.12 tolerated(0.61) benign(0.41) TCGA-EB-A5UL-06 11 63987250 63987250 C G FERMT3 Silent p.L356L 0.38 TCGA-EB-A5UL-06 11 64571809 64571809 G T MEN1 Silent p.L615L 0.36 TCGA-EB-A5UL-06 11 65401774 65401774 T G PCNXL3 Missense_Mutation p.F1550V 0.27 deleterious(0) probably_damaging(0.98) TCGA-EB-A5UL-06 11 66325257 66325257 G A CTD-3074O7.2 3'Flank 0.35 TCGA-EB-A5UL-06 11 68326071 68326071 C T PPP6R3 Missense_Mutation p.H257Y 0.43 deleterious(0) benign(0.212) TCGA-EB-A5UL-06 11 74414498 74414498 G A CHRDL2 Silent p.H266H 0.50 TCGA-EB-A5UL-06 11 78368945 78368945 C T TENM4 3'UTR 0.25 TCGA-EB-A5UL-06 11 89391840 89391840 A G FOLH1B 5'Flank 0.27 TCGA-EB-A5UL-06 12 106633346 106633346 G A CKAP4 Missense_Mutation p.S422F 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-EB-A5UL-06 12 109046152 109046152 G A CORO1C Silent p.S299S 0.35 TCGA-EB-A5UL-06 12 113403550 113403550 G A OAS3 Missense_Mutation p.G802D 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 12 113557192 113557192 C T RASAL1 Nonsense_Mutation p.W162* 0.31 TCGA-EB-A5UL-06 12 11420865 11420865 T C PRB3 Silent p.G106G 0.07 TCGA-EB-A5UL-06 12 117217066 117217066 C T RNFT2 Silent p.I265I 0.31 TCGA-EB-A5UL-06 12 117691498 117691498 C T NOS1 Missense_Mutation p.D899N 0.30 tolerated(0.72) benign(0.027) TCGA-EB-A5UL-06 12 117698398 117698398 C T NOS1 Missense_Mutation p.A747T 0.34 tolerated(0.08) benign(0.194) TCGA-EB-A5UL-06 12 117718530 117718530 C T NOS1 Silent p.E508E 0.10 TCGA-EB-A5UL-06 12 117718532 117718532 C T NOS1 Missense_Mutation p.E508K 0.09 deleterious(0.03) benign(0.399) TCGA-EB-A5UL-06 12 124358207 124358207 C T DNAH10 Missense_Mutation p.P2512S 0.29 possibly_damaging(0.513) TCGA-EB-A5UL-06 12 124358208 124358208 C T DNAH10 Missense_Mutation p.P2512L 0.26 possibly_damaging(0.513) TCGA-EB-A5UL-06 12 129563084 129563084 T C TMEM132D Missense_Mutation p.K704E 0.06 deleterious(0.01) possibly_damaging(0.89) TCGA-EB-A5UL-06 12 13221575 13221575 C T KIAA1467 Missense_Mutation p.P433L 0.20 tolerated(0.54) benign(0.092) TCGA-EB-A5UL-06 12 13715825 13715825 C T GRIN2B Silent p.G1449G 0.27 TCGA-EB-A5UL-06 12 14849409 14849409 C T GUCY2C 5'UTR 0.37 TCGA-EB-A5UL-06 12 18234202 18234202 T A RERGL Nonsense_Mutation p.K181* 0.21 TCGA-EB-A5UL-06 12 18891239 18891239 A T CAPZA3 Nonsense_Mutation p.R13* 0.05 TCGA-EB-A5UL-06 12 21733377 21733377 G A GYS2 Missense_Mutation p.P68S 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 12 29608202 29608202 C T OVCH1 Nonsense_Mutation p.W806* 0.41 TCGA-EB-A5UL-06 12 30867933 30867933 T C CAPRIN2 Silent p.R820R 0.21 TCGA-EB-A5UL-06 12 45169860 45169860 G C NELL2 Missense_Mutation p.T329S 0.12 tolerated(0.19) benign(0.174) TCGA-EB-A5UL-06 12 47629042 47629042 C T PCED1B Nonsense_Mutation p.Q66* 0.27 TCGA-EB-A5UL-06 12 48110143 48110143 G A ENDOU Missense_Mutation p.L231F 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UL-06 12 5155058 5155058 C T KCNA5 Missense_Mutation p.P582L 0.10 deleterious_low_confidence(0.03) benign(0.002) TCGA-EB-A5UL-06 12 53164932 53164932 G A KRT76 Silent p.A445A 0.20 TCGA-EB-A5UL-06 12 55524417 55524417 A T OR9K2 Nonsense_Mutation p.R289* 0.13 TCGA-EB-A5UL-06 12 55714842 55714842 C T OR6C1 Silent p.I153I 0.15 TCGA-EB-A5UL-06 12 56428793 56428793 C T IKZF4 Missense_Mutation p.P479L 0.56 tolerated(0.16) benign(0.002) TCGA-EB-A5UL-06 12 56428794 56428794 C T IKZF4 Silent p.P479P 0.56 TCGA-EB-A5UL-06 12 56429091 56429091 C T IKZF4 Silent p.V578V 0.11 TCGA-EB-A5UL-06 12 56528177 56528177 C T ESYT1 Silent p.L543L 0.10 TCGA-EB-A5UL-06 12 57351007 57351007 C T RDH16 Silent p.V80V 0.45 TCGA-EB-A5UL-06 12 57441807 57441807 G A MYO1A Nonsense_Mutation p.Q66* 0.16 TCGA-EB-A5UL-06 12 57490328 57490328 C T STAT6 3'UTR 0.28 TCGA-EB-A5UL-06 12 57600439 57600439 C T LRP1 Missense_Mutation p.S3925F 0.31 probably_damaging(0.994) TCGA-EB-A5UL-06 12 57868244 57868244 G A ARHGAP9 Missense_Mutation p.S582F 0.07 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 12 654081 654081 C T B4GALNT3 Missense_Mutation p.P161S 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 12 68642498 68642498 A T IL22 3'UTR 0.11 TCGA-EB-A5UL-06 12 72666940 72666940 G A TRHDE Missense_Mutation p.E128K 0.29 tolerated(0.82) benign(0.026) TCGA-EB-A5UL-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.35 TCGA-EB-A5UL-06 12 7942198 7942198 C T NANOG 5'UTR 0.13 TCGA-EB-A5UL-06 12 8212039 8212039 C T C3AR1 Missense_Mutation p.R248K 0.04 tolerated(0.89) benign(0.001) TCGA-EB-A5UL-06 12 85500321 85500321 G A LRRIQ1 Nonsense_Mutation p.W1102* 0.26 TCGA-EB-A5UL-06 12 9321521 9321521 G A PZP Missense_Mutation p.S684L 0.25 tolerated(1) benign(0.002) TCGA-EB-A5UL-06 12 96356164 96356164 G A AMDHD1 Missense_Mutation p.S282N 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5UL-06 13 106142360 106142360 C T DAOA Missense_Mutation p.T131I 0.23 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-EB-A5UL-06 13 19751121 19751121 G A TUBA3C Silent p.T334T 0.05 TCGA-EB-A5UL-06 13 25478124 25478124 G C CENPJ Missense_Mutation p.A922G 0.52 deleterious(0.01) benign(0.437) TCGA-EB-A5UL-06 13 27216397 27216397 G A WASF3 Splice_Site 0.37 TCGA-EB-A5UL-06 13 29599955 29599955 G A MTUS2 Missense_Mutation p.G384R 0.43 deleterious(0.05) benign(0.099) TCGA-EB-A5UL-06 13 46287885 46287885 A T SPERT Missense_Mutation p.K242M 0.30 deleterious(0) possibly_damaging(0.834) TCGA-EB-A5UL-06 13 52542710 52542710 C T ATP7B Missense_Mutation p.G526E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 13 53624176 53624176 C T OLFM4 Missense_Mutation p.S268F 0.07 deleterious(0.02) probably_damaging(0.951) TCGA-EB-A5UL-06 13 58207422 58207422 T C PCDH17 Missense_Mutation p.Y248H 0.13 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UL-06 13 58298965 58298965 G A PCDH17 Missense_Mutation p.R1006Q 0.19 tolerated(0.14) benign(0.233) TCGA-EB-A5UL-06 13 60413502 60413502 G A DIAPH3 Missense_Mutation p.P940S 0.06 tolerated(0.11) benign(0.004) TCGA-EB-A5UL-06 13 60545107 60545107 G A DIAPH3 Missense_Mutation p.P613L 0.08 tolerated(0.07) possibly_damaging(0.493) TCGA-EB-A5UL-06 13 61987197 61987197 C T PCDH20 Silent p.V345V 0.09 TCGA-EB-A5UL-06 13 72204733 72204733 G A DACH1 Nonsense_Mutation p.Q363* 0.23 TCGA-EB-A5UL-06 14 38265520 38265520 G A TTC6 Missense_Mutation p.M1271I 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-EB-A5UL-06 14 39650381 39650381 T A PNN Missense_Mutation p.S490T 0.27 tolerated_low_confidence(0.49) benign(0.015) TCGA-EB-A5UL-06 14 39650382 39650382 C G PNN Missense_Mutation p.S490C 0.24 tolerated_low_confidence(0.09) benign(0.184) TCGA-EB-A5UL-06 14 39650383 39650383 C T PNN Silent p.S490S 0.24 TCGA-EB-A5UL-06 14 47342753 47342753 C G MDGA2 Missense_Mutation p.G879R 0.23 deleterious(0) probably_damaging(0.982) TCGA-EB-A5UL-06 14 53100254 53100254 G A GPR137C Missense_Mutation p.V292I 0.40 tolerated(0.33) benign(0.003) TCGA-EB-A5UL-06 14 70926354 70926354 C T ADAM21 Missense_Mutation p.P713L 0.19 tolerated(0.11) benign(0.003) TCGA-EB-A5UL-06 14 73989171 73989171 G A HEATR4 Missense_Mutation p.S229F 0.35 tolerated(0.19) benign(0.168) TCGA-EB-A5UL-06 14 75376523 75376523 C T RPS6KL1 Silent p.R331R 0.47 TCGA-EB-A5UL-06 14 86088594 86088594 C T FLRT2 Missense_Mutation p.P246S 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 14 89206788 89206788 C T EML5 Silent p.G218G 0.36 TCGA-EB-A5UL-06 14 91681796 91681796 C T C14orf159 Silent p.L538L 0.29 TCGA-EB-A5UL-06 14 94139701 94139701 G A UNC79 Missense_Mutation p.R2076Q 0.51 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UL-06 14 94935942 94935942 A G SERPINA9 Missense_Mutation p.L97P 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 15 20876534 20876534 C A NBEAP1 RNA 0.08 TCGA-EB-A5UL-06 15 23052681 23052681 G A NIPA1 Missense_Mutation p.A131V 0.08 tolerated(0.34) benign(0.002) TCGA-EB-A5UL-06 15 24921754 24921754 G A NPAP1 Missense_Mutation p.G247E 0.35 tolerated(0.07) possibly_damaging(0.853) TCGA-EB-A5UL-06 15 25436578 25436578 A G SNORD115-12 RNA 0.29 TCGA-EB-A5UL-06 15 25928525 25928525 G A ATP10A Missense_Mutation p.P1134S 0.38 deleterious(0) probably_damaging(0.983) TCGA-EB-A5UL-06 15 40588498 40588498 G A PLCB2 Silent p.A565A 0.24 TCGA-EB-A5UL-06 15 40708539 40708539 C A IVD Silent p.A375A 0.09 TCGA-EB-A5UL-06 15 40914789 40914789 C T CASC5 Missense_Mutation p.P802L 0.16 deleterious(0) possibly_damaging(0.888) TCGA-EB-A5UL-06 15 42375496 42375496 C T PLA2G4D Missense_Mutation p.G191E 0.24 deleterious(0.03) benign(0.181) TCGA-EB-A5UL-06 15 43821242 43821242 C T MAP1A Missense_Mutation p.S2524F 0.34 probably_damaging(0.999) TCGA-EB-A5UL-06 15 45454089 45454089 G A DUOX1 Missense_Mutation p.R1337Q 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UL-06 15 45454090 45454090 G A DUOX1 Silent p.R1337R 0.12 TCGA-EB-A5UL-06 15 45782997 45782997 G A SLC30A4 Silent p.I207I 0.30 TCGA-EB-A5UL-06 15 48500146 48500146 G A SLC12A1 Missense_Mutation p.G77E 0.29 tolerated(0.08) possibly_damaging(0.732) TCGA-EB-A5UL-06 15 59911080 59911080 C T GCNT3 Nonsense_Mutation p.Q215* 0.14 TCGA-EB-A5UL-06 15 62989953 62989953 G A TLN2 Silent p.P453P 0.32 TCGA-EB-A5UL-06 15 63353404 63353404 C T TPM1 Nonsense_Mutation p.R191* 0.43 TCGA-EB-A5UL-06 15 65490069 65490069 G A CILP Missense_Mutation p.P852L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 15 65495735 65495735 C T CILP Silent p.K331K 0.09 TCGA-EB-A5UL-06 15 72020956 72020956 G A THSD4 Missense_Mutation p.E476K 0.18 deleterious(0.02) benign(0.36) TCGA-EB-A5UL-06 15 72030342 72030342 G A THSD4 Silent p.G634G 0.11 TCGA-EB-A5UL-06 15 72459431 72459431 C T GRAMD2 Silent p.V125V 0.21 TCGA-EB-A5UL-06 15 74467763 74467763 C T ISLR Silent p.I188I 0.14 TCGA-EB-A5UL-06 15 74468480 74468480 C T ISLR Silent p.S427S 0.21 TCGA-EB-A5UL-06 15 75498827 75498827 G C C15orf39 Silent p.L146L 0.08 TCGA-EB-A5UL-06 15 75632213 75632213 C T COMMD4 Silent p.L185L 0.39 TCGA-EB-A5UL-06 15 76463419 76463419 C T C15orf27 Missense_Mutation p.A200V 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UL-06 15 84506853 84506853 G A ADAMTSL3 Missense_Mutation p.D205N 0.26 deleterious(0.02) benign(0.135) TCGA-EB-A5UL-06 15 86807791 86807791 G A AGBL1 Silent p.P417P 0.39 TCGA-EB-A5UL-06 15 90342782 90342782 C T ANPEP Missense_Mutation p.D610N 0.34 tolerated(0.57) benign(0.001) TCGA-EB-A5UL-06 16 11870214 11870214 G A ZC3H7A Missense_Mutation p.L183F 0.15 tolerated(0.72) benign(0.001) TCGA-EB-A5UL-06 16 1502836 1502836 C T CLCN7 Missense_Mutation p.A425T 0.29 tolerated(0.07) benign(0.393) TCGA-EB-A5UL-06 16 19058518 19058518 C T TMC7 Missense_Mutation p.L563F 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A5UL-06 16 20043064 20043064 G A GPR139 Missense_Mutation p.S352F 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EB-A5UL-06 16 20570715 20570715 C T ACSM2B Missense_Mutation p.E78K 0.21 deleterious(0) possibly_damaging(0.879) TCGA-EB-A5UL-06 16 20673152 20673152 G A ACSM1 Missense_Mutation p.S319F 0.13 deleterious(0.01) benign(0.037) TCGA-EB-A5UL-06 16 23546250 23546250 G A EARS2 Missense_Mutation p.S306F 0.28 deleterious(0) benign(0.393) TCGA-EB-A5UL-06 16 28331720 28331720 C T SBK1 Silent p.F251F 0.23 TCGA-EB-A5UL-06 16 30133193 30133193 C T MAPK3 Missense_Mutation p.G102D 0.10 tolerated(0.39) benign(0.027) TCGA-EB-A5UL-06 16 30779532 30779532 C T RNF40 Missense_Mutation p.P554S 0.30 tolerated(0.81) benign(0.001) TCGA-EB-A5UL-06 16 4431850 4431850 G A VASN Silent p.E324E 0.13 TCGA-EB-A5UL-06 16 46702913 46702913 G A VPS35 Missense_Mutation p.R526C 0.23 deleterious(0.04) benign(0.071) TCGA-EB-A5UL-06 16 53191433 53191433 C T CHD9 Missense_Mutation p.H478Y 0.22 benign(0.341) TCGA-EB-A5UL-06 16 597758 597758 C G CAPN15 Missense_Mutation p.T307S 0.19 tolerated_low_confidence(0.77) benign(0.001) TCGA-EB-A5UL-06 16 61823256 61823256 C T CDH8 Missense_Mutation p.E470K 0.35 tolerated(0.11) possibly_damaging(0.828) TCGA-EB-A5UL-06 16 61823266 61823266 G A CDH8 Silent p.I466I 0.16 TCGA-EB-A5UL-06 16 67321007 67321007 C T PLEKHG4 Silent p.S1010S 0.18 TCGA-EB-A5UL-06 16 68598373 68598373 C T ZFP90 Silent p.A561A 0.37 TCGA-EB-A5UL-06 16 70905965 70905965 G A HYDIN Missense_Mutation p.S3689L 0.28 benign(0) TCGA-EB-A5UL-06 16 72993824 72993824 G A ZFHX3 Missense_Mutation p.P74L 0.31 benign(0.002) TCGA-EB-A5UL-06 16 81077755 81077755 A G ATMIN Missense_Mutation p.E551G 0.17 tolerated(0.14) benign(0.001) TCGA-EB-A5UL-06 16 81193307 81193307 C A PKD1L2 RNA 0.40 TCGA-EB-A5UL-06 16 85112545 85112545 C A KIAA0513 Missense_Mutation p.P280T 0.06 deleterious(0.02) benign(0.14) TCGA-EB-A5UL-06 17 1479899 1479899 G A SLC43A2 Missense_Mutation p.P514S 0.42 deleterious(0.01) possibly_damaging(0.721) TCGA-EB-A5UL-06 17 15965063 15965063 C A NCOR1 Nonsense_Mutation p.E1845* 0.22 TCGA-EB-A5UL-06 17 17696911 17696911 C T RAI1 Missense_Mutation p.P217S 0.21 tolerated(0.12) benign(0.064) TCGA-EB-A5UL-06 17 18023102 18023102 G A MYO15A Missense_Mutation p.D330N 0.51 possibly_damaging(0.555) TCGA-EB-A5UL-06 17 26938429 26938429 G A SGK494 Silent p.F294F 0.40 TCGA-EB-A5UL-06 17 27837968 27837968 C T TAOK1 Silent p.S554S 0.52 TCGA-EB-A5UL-06 17 38928152 38928152 G A KRT26 Missense_Mutation p.L72F 0.15 tolerated(0.54) possibly_damaging(0.626) TCGA-EB-A5UL-06 17 38955845 38955845 G A KRT28 Silent p.L101L 0.13 TCGA-EB-A5UL-06 17 40265610 40265610 C T KAT2A 3'UTR 0.33 TCGA-EB-A5UL-06 17 4461724 4461724 C T GGT6 Silent p.V356V 0.37 TCGA-EB-A5UL-06 17 46628027 46628027 G T HOXB3 Missense_Mutation p.P322H 0.15 deleterious(0.03) benign(0.396) TCGA-EB-A5UL-06 17 54403646 54403646 G A ANKFN1 Missense_Mutation p.D43N 0.68 tolerated_low_confidence(0.33) benign(0.057) TCGA-EB-A5UL-06 17 56320340 56320340 G A LPO Intron 0.06 TCGA-EB-A5UL-06 17 56811484 56811484 G A RAD51C Silent p.Q344Q 0.73 TCGA-EB-A5UL-06 17 56811485 56811485 G A RAD51C Missense_Mutation p.G345R 0.79 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UL-06 17 56833374 56833374 C T PPM1E Missense_Mutation p.P6S 0.57 deleterious_low_confidence(0) unknown(0) TCGA-EB-A5UL-06 17 67522831 67522831 G C MAP2K6 Missense_Mutation p.V288L 0.13 tolerated(0.29) benign(0.152) TCGA-EB-A5UL-06 17 7224553 7224553 C T NEURL4 Missense_Mutation p.G1080S 0.40 tolerated(0.54) benign(0.001) TCGA-EB-A5UL-06 17 73274334 73274334 G T SLC25A19 Missense_Mutation p.T181N 0.11 deleterious(0) possibly_damaging(0.807) TCGA-EB-A5UL-06 17 74308964 74308964 G A PRPSAP1 Missense_Mutation p.S329F 0.15 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UL-06 17 7681646 7681646 C T DNAH2 Silent p.S1800S 0.43 TCGA-EB-A5UL-06 17 78321333 78321333 G A RNF213 Silent p.P3066P 0.63 TCGA-EB-A5UL-06 17 78919516 78919516 C T RPTOR Silent p.V1025V 0.39 TCGA-EB-A5UL-06 17 78919517 78919517 C T RPTOR Missense_Mutation p.P1026S 0.39 deleterious(0.01) possibly_damaging(0.851) TCGA-EB-A5UL-06 17 8243540 8243540 C A ODF4 Silent p.S57S 0.15 TCGA-EB-A5UL-06 17 9676088 9676088 C T DHRS7C Nonsense_Mutation p.W242* 0.40 TCGA-EB-A5UL-06 18 19996183 19996183 G A CTAGE1 Missense_Mutation p.P531L 0.16 tolerated(0.06) probably_damaging(0.987) TCGA-EB-A5UL-06 18 29054139 29054139 G A DSG3 Missense_Mutation p.M719I 0.21 tolerated(0.4) benign(0.009) TCGA-EB-A5UL-06 18 31311980 31311980 G A ASXL3 Missense_Mutation p.E310K 0.23 possibly_damaging(0.847) TCGA-EB-A5UL-06 18 3215039 3215039 G A MYOM1 Silent p.F61F 0.42 TCGA-EB-A5UL-06 18 47101807 47101807 G A LIPG Missense_Mutation p.D214N 0.25 tolerated(0.42) benign(0.17) TCGA-EB-A5UL-06 18 50734115 50734115 C T DCC Nonsense_Mutation p.R597* 0.22 TCGA-EB-A5UL-06 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.10 tolerated(0.12) probably_damaging(0.998) TCGA-EB-A5UL-06 18 59895603 59895603 C T KIAA1468 Missense_Mutation p.P407L 0.17 tolerated(0.41) benign(0.001) TCGA-EB-A5UL-06 18 61323087 61323087 G A SERPINB3 Missense_Mutation p.S326F 0.22 deleterious(0) probably_damaging(0.993) TCGA-EB-A5UL-06 18 72998544 72998544 C T TSHZ1 Silent p.N349N 0.35 TCGA-EB-A5UL-06 18 77105508 77105508 C T ATP9B Silent p.P851P 0.37 TCGA-EB-A5UL-06 18 77659242 77659242 G A KCNG2 Missense_Mutation p.G276E 0.14 deleterious(0.04) probably_damaging(0.993) TCGA-EB-A5UL-06 18 9557371 9557371 G A PPP4R1 Nonsense_Mutation p.R680* 0.16 TCGA-EB-A5UL-06 19 110764 110764 G A OR4F17 Missense_Mutation p.G29E 0.22 deleterious(0) benign(0.075) TCGA-EB-A5UL-06 19 11303658 11303658 G A KANK2 Silent p.A366A 0.15 TCGA-EB-A5UL-06 19 12883636 12883636 G A HOOK2 Nonsense_Mutation p.Q116* 0.11 TCGA-EB-A5UL-06 19 1360163 1360163 C T MUM1 Silent p.P82P 0.07 TCGA-EB-A5UL-06 19 14037523 14037523 C T CC2D1A Silent p.F686F 0.15 TCGA-EB-A5UL-06 19 14037524 14037524 C A CC2D1A Missense_Mutation p.P687T 0.13 deleterious(0.02) probably_damaging(0.99) TCGA-EB-A5UL-06 19 15198407 15198407 C T OR1I1 Silent p.F177F 0.12 TCGA-EB-A5UL-06 19 15654826 15654826 A G CYP4F22 Silent p.E328E 0.17 TCGA-EB-A5UL-06 19 15795921 15795921 C T CYP4F12 Silent p.N343N 0.32 TCGA-EB-A5UL-06 19 17370465 17370465 G A USHBP1 Missense_Mutation p.P282L 0.14 tolerated(0.39) benign(0.162) TCGA-EB-A5UL-06 19 17628188 17628188 C T PGLS Missense_Mutation p.P163L 0.20 deleterious(0.01) benign(0.297) TCGA-EB-A5UL-06 19 17985483 17985483 G A SLC5A5 Silent p.L162L 0.19 TCGA-EB-A5UL-06 19 20807376 20807376 T C ZNF626 Missense_Mutation p.Q436R 0.17 tolerated(0.54) benign(0.001) TCGA-EB-A5UL-06 19 22846965 22846965 G A ZNF492 Missense_Mutation p.G165E 0.13 tolerated(0.29) probably_damaging(0.999) TCGA-EB-A5UL-06 19 23415043 23415043 T C ZNF724P Missense_Mutation p.Q19R 0.18 deleterious(0.02) possibly_damaging(0.728) TCGA-EB-A5UL-06 19 2438167 2438167 G A LMNB2 Silent p.F226F 0.16 TCGA-EB-A5UL-06 19 30934665 30934665 G A ZNF536 Missense_Mutation p.E66K 0.14 deleterious_low_confidence(0.03) benign(0.242) TCGA-EB-A5UL-06 19 36207628 36207628 T G ZBTB32 Missense_Mutation p.C480G 0.19 tolerated_low_confidence(0.72) unknown(0) TCGA-EB-A5UL-06 19 36297576 36297576 C T PRODH2 Splice_Site p.X354_splice 0.19 TCGA-EB-A5UL-06 19 36883943 36883943 T G ZFP82 Silent p.L433L 0.19 TCGA-EB-A5UL-06 19 38572412 38572412 C T SIPA1L3 Silent p.P69P 0.16 TCGA-EB-A5UL-06 19 40430449 40430449 C T FCGBP Missense_Mutation p.M498I 0.39 benign(0.241) TCGA-EB-A5UL-06 19 41601665 41601665 G A CYP2A13 Missense_Mutation p.G435E 0.11 deleterious(0) probably_damaging(0.987) TCGA-EB-A5UL-06 19 41601861 41601861 G A CYP2A13 3'UTR 0.07 TCGA-EB-A5UL-06 19 43428872 43428872 A G PSG7 3'UTR 0.29 TCGA-EB-A5UL-06 19 43523192 43523192 G A PSG11 Missense_Mutation p.P147S 0.49 tolerated(0.09) probably_damaging(0.997) TCGA-EB-A5UL-06 19 47241454 47241454 G A STRN4 Nonsense_Mutation p.Q143* 0.27 TCGA-EB-A5UL-06 19 47241455 47241455 G A STRN4 Silent p.N142N 0.27 TCGA-EB-A5UL-06 19 49510575 49510575 A G RUVBL2 Missense_Mutation p.I138V 0.11 tolerated(0.1) benign(0.059) TCGA-EB-A5UL-06 19 49867985 49867985 C T DKKL1 Nonsense_Mutation p.Q53* 0.11 TCGA-EB-A5UL-06 19 52130930 52130930 C T SIGLEC5 Missense_Mutation p.R356Q 0.46 tolerated(0.3) benign(0.379) TCGA-EB-A5UL-06 19 52469189 52469189 G A ZNF350 Missense_Mutation p.H173Y 0.46 tolerated(0.35) benign(0.009) TCGA-EB-A5UL-06 19 54297224 54297224 C T NLRP12 3'UTR 0.56 TCGA-EB-A5UL-06 19 5587889 5587889 G A SAFB2 Silent p.A876A 0.16 TCGA-EB-A5UL-06 19 5653155 5653155 C T SAFB Silent p.A441A 0.11 TCGA-EB-A5UL-06 19 5866709 5866709 G A FUT5 Missense_Mutation p.S343F 0.23 tolerated(0.24) benign(0.002) TCGA-EB-A5UL-06 19 59010623 59010623 C T SLC27A5 Intron 0.33 TCGA-EB-A5UL-06 19 7811348 7811348 T G CD209 Missense_Mutation p.Q59P 0.18 tolerated(0.09) benign(0.003) TCGA-EB-A5UL-06 19 8203090 8203090 C T FBN3 Missense_Mutation p.R379Q 0.10 tolerated(0.59) benign(0.012) TCGA-EB-A5UL-06 19 855687 855687 G A ELANE Missense_Mutation p.G164R 0.27 tolerated(0.37) benign(0.004) TCGA-EB-A5UL-06 19 9058106 9058106 G A MUC16 Silent p.T9780T 0.25 TCGA-EB-A5UL-06 19 9226362 9226362 G A OR7G1 Silent p.I26I 0.13 TCGA-EB-A5UL-06 1 100154714 100154714 G A PALMD Missense_Mutation p.E300K 0.18 tolerated(0.15) benign(0.002) TCGA-EB-A5UL-06 1 112524501 112524501 G A KCND3 Missense_Mutation p.S283F 0.50 deleterious(0) possibly_damaging(0.788) TCGA-EB-A5UL-06 1 114511114 114511114 G A HIPK1 Missense_Mutation p.S872N 0.51 tolerated(0.18) benign(0.168) TCGA-EB-A5UL-06 1 115167889 115167889 T C DENND2C Silent p.E239E 0.52 TCGA-EB-A5UL-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.48 deleterious(0.01) benign(0.045) TCGA-EB-A5UL-06 1 116609279 116609279 C T SLC22A15 Missense_Mutation p.R502C 0.22 tolerated(0.07) possibly_damaging(0.507) TCGA-EB-A5UL-06 1 12726437 12726437 C T AADACL4 Silent p.G305G 0.43 TCGA-EB-A5UL-06 1 12820967 12820967 G A C1orf158 3'UTR 0.43 TCGA-EB-A5UL-06 1 13911978 13911978 A G PDPN Intron 0.12 TCGA-EB-A5UL-06 1 149915967 149915967 G A OTUD7B Missense_Mutation p.S774F 0.30 deleterious_low_confidence(0.02) benign(0.157) TCGA-EB-A5UL-06 1 150940569 150940569 G A CERS2 Nonsense_Mutation p.R134* 0.21 TCGA-EB-A5UL-06 1 150940570 150940570 G A CERS2 Silent p.F133F 0.20 TCGA-EB-A5UL-06 1 152323914 152323914 C T FLG2 Silent p.G2116G 0.13 TCGA-EB-A5UL-06 1 152323915 152323915 C T FLG2 Missense_Mutation p.G2116E 0.12 benign(0.177) TCGA-EB-A5UL-06 1 152733095 152733095 C T KPRP Missense_Mutation p.P344L 0.35 deleterious(0.01) possibly_damaging(0.738) TCGA-EB-A5UL-06 1 155448478 155448478 G A ASH1L Missense_Mutation p.P1395S 0.20 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-EB-A5UL-06 1 156812956 156812956 G A INSRR Missense_Mutation p.S989F 0.22 deleterious(0.02) benign(0.055) TCGA-EB-A5UL-06 1 158325930 158325930 G A CD1E Intron 0.33 TCGA-EB-A5UL-06 1 160492959 160492959 G A SLAMF6 Silent p.L8L 0.25 TCGA-EB-A5UL-06 1 161276675 161276675 C T MPZ Missense_Mutation p.E91K 0.08 tolerated(0.69) benign(0.005) TCGA-EB-A5UL-06 1 165173226 165173226 T A LMX1A Missense_Mutation p.N347I 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-EB-A5UL-06 1 167798536 167798536 T C ADCY10 Missense_Mutation p.N1240S 0.04 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UL-06 1 168278023 168278023 G A TBX19 Silent p.S320S 0.25 TCGA-EB-A5UL-06 1 17046488 17046488 G A ESPNP RNA 0.06 TCGA-EB-A5UL-06 1 171501964 171501964 A G PRRC2C Silent p.L577L 0.14 TCGA-EB-A5UL-06 1 175306679 175306679 G A TNR Silent p.D1173D 0.25 TCGA-EB-A5UL-06 1 17567127 17567127 C G PADI1 Intron 0.32 TCGA-EB-A5UL-06 1 176526002 176526002 G A PAPPA2 Missense_Mutation p.E182K 0.23 tolerated_low_confidence(0.35) benign(0.001) TCGA-EB-A5UL-06 1 179887286 179887286 A T TOR1AIP1 Missense_Mutation p.D555V 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 1 18149839 18149839 G A ACTL8 Silent p.K112K 0.17 TCGA-EB-A5UL-06 1 183907865 183907865 A G COLGALT2 3'UTR 0.14 TCGA-EB-A5UL-06 1 186925441 186925441 C T PLA2G4A Missense_Mutation p.S515F 0.30 deleterious(0.02) benign(0.006) TCGA-EB-A5UL-06 1 18808875 18808875 G A KLHDC7A Missense_Mutation p.R467H 0.16 deleterious(0) probably_damaging(0.988) TCGA-EB-A5UL-06 1 196295881 196295881 C A KCNT2 Nonsense_Mutation p.E748* 0.14 TCGA-EB-A5UL-06 1 197036389 197036389 C T F13B 5'UTR 0.21 TCGA-EB-A5UL-06 1 200880953 200880953 C T C1orf106 Silent p.P444P 0.11 TCGA-EB-A5UL-06 1 200967693 200967693 G A KIF21B Silent p.F632F 0.34 TCGA-EB-A5UL-06 1 201016272 201016272 G A CACNA1S Missense_Mutation p.R1547W 0.13 deleterious(0) probably_damaging(0.993) TCGA-EB-A5UL-06 1 201195154 201195154 C T IGFN1 Silent p.P3563P 0.19 TCGA-EB-A5UL-06 1 201980309 201980309 C T ELF3 Silent p.F15F 0.28 TCGA-EB-A5UL-06 1 202777350 202777350 A C KDM5B Silent p.P28P 0.27 TCGA-EB-A5UL-06 1 202777351 202777351 G A KDM5B Missense_Mutation p.P28L 0.29 deleterious(0.01) unknown(0) TCGA-EB-A5UL-06 1 206649565 206649565 C T IKBKE Missense_Mutation p.R134C 0.08 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 1 215932006 215932006 C T USH2A Missense_Mutation p.E3774K 0.09 benign(0.013) TCGA-EB-A5UL-06 1 22073613 22073613 G A USP48 Missense_Mutation p.T313I 0.12 deleterious(0) possibly_damaging(0.808) TCGA-EB-A5UL-06 1 220824054 220824054 A T MARK1 Missense_Mutation p.K521N 0.15 deleterious(0) possibly_damaging(0.546) TCGA-EB-A5UL-06 1 228504556 228504556 A T OBSCN Missense_Mutation p.S5435C 0.31 possibly_damaging(0.777) TCGA-EB-A5UL-06 1 228559909 228559909 C T OBSCN Missense_Mutation p.P8101S 0.33 benign(0.058) TCGA-EB-A5UL-06 1 233750003 233750003 G A KCNK1 Missense_Mutation p.G29D 0.14 deleterious(0.03) possibly_damaging(0.844) TCGA-EB-A5UL-06 1 23756347 23756347 A T ASAP3 3'UTR 0.24 TCGA-EB-A5UL-06 1 24387573 24387573 C T MYOM3 Splice_Site p.X1324_splice 0.25 TCGA-EB-A5UL-06 1 248308755 248308755 C T OR2M5 Silent p.F102F 0.32 TCGA-EB-A5UL-06 1 26737300 26737300 G A LIN28A 5'UTR 0.21 TCGA-EB-A5UL-06 1 29611308 29611308 C T PTPRU Silent p.L749L 0.15 TCGA-EB-A5UL-06 1 34128622 34128622 T G CSMD2 Missense_Mutation p.S1335R 0.12 tolerated(0.08) benign(0.088) TCGA-EB-A5UL-06 1 3756225 3756225 C A CEP104 Nonsense_Mutation p.E228* 0.09 TCGA-EB-A5UL-06 1 41101626 41101626 G A RIMS3 Silent p.S107S 0.15 TCGA-EB-A5UL-06 1 45292715 45292715 G A PTCH2 Missense_Mutation p.P852S 0.27 tolerated(0.26) benign(0.004) TCGA-EB-A5UL-06 1 45980606 45980606 G A PRDX1 Missense_Mutation p.P108S 0.12 tolerated(0.31) benign(0.015) TCGA-EB-A5UL-06 1 47582349 47582349 G A CYP4Z1 Missense_Mutation p.E432K 0.22 deleterious(0.04) benign(0.055) TCGA-EB-A5UL-06 1 52879611 52879611 C T PRPF38A Missense_Mutation p.R224C 0.18 tolerated(0.07) unknown(0) TCGA-EB-A5UL-06 1 53975665 53975665 G A GLIS1 Missense_Mutation p.P465L 0.29 deleterious(0.02) benign(0.327) TCGA-EB-A5UL-06 1 54645014 54645014 G A CYB5RL Silent p.L184L 0.34 TCGA-EB-A5UL-06 1 57169955 57169955 C T PRKAA2 Missense_Mutation p.P367L 0.27 deleterious(0.02) possibly_damaging(0.889) TCGA-EB-A5UL-06 1 59787382 59787382 C T FGGY Missense_Mutation p.S54F 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 1 6212510 6212510 A T CHD5 Missense_Mutation p.F278I 0.10 tolerated(0.08) benign(0.165) TCGA-EB-A5UL-06 1 62330003 62330003 G A INADL Missense_Mutation p.E845K 0.29 tolerated(0.08) benign(0.044) TCGA-EB-A5UL-06 1 6311561 6311561 G A GPR153 Silent p.D272D 0.36 TCGA-EB-A5UL-06 1 65874423 65874423 G A DNAJC6 Missense_Mutation p.R864K 0.32 tolerated(0.13) probably_damaging(0.982) TCGA-EB-A5UL-06 1 78184297 78184297 A C USP33 Missense_Mutation p.V605G 0.05 deleterious(0) possibly_damaging(0.555) TCGA-EB-A5UL-06 20 10030861 10030861 G A ANKEF1 Splice_Site p.X548_splice 0.23 TCGA-EB-A5UL-06 20 1460494 1460494 C T SIRPB2 Missense_Mutation p.R101Q 0.18 tolerated(0.82) benign(0.015) TCGA-EB-A5UL-06 20 1551573 1551573 G A SIRPB1 Missense_Mutation p.A321V 0.15 tolerated(0.06) benign(0.151) TCGA-EB-A5UL-06 20 18143519 18143519 C T CSRP2BP Missense_Mutation p.S534F 0.27 tolerated(0.1) benign(0.013) TCGA-EB-A5UL-06 20 20243646 20243646 G A C20orf26 Missense_Mutation p.R792K 0.14 tolerated(0.32) benign(0.004) TCGA-EB-A5UL-06 20 21687255 21687255 G A PAX1 Missense_Mutation p.E156K 0.09 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 20 23065183 23065183 G A CD93 Silent p.I549I 0.29 TCGA-EB-A5UL-06 20 2774947 2774947 G A CPXM1 Silent p.F698F 0.46 TCGA-EB-A5UL-06 20 2998506 2998506 G A PTPRA Missense_Mutation p.E330K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A5UL-06 20 3005129 3005129 C T PTPRA Silent p.V492V 0.15 TCGA-EB-A5UL-06 20 30060796 30060796 G A DEFB124 Silent p.F7F 0.12 TCGA-EB-A5UL-06 20 3128187 3128187 G A FASTKD5 Silent p.L510L 0.19 TCGA-EB-A5UL-06 20 34021681 34021681 C T GDF5 3'UTR 0.17 TCGA-EB-A5UL-06 20 34021881 34021881 C T GDF5 Silent p.T444T 0.42 TCGA-EB-A5UL-06 20 3652111 3652111 G T ADAM33 Silent p.A646A 0.22 TCGA-EB-A5UL-06 20 40141507 40141507 G A CHD6 Missense_Mutation p.S277F 0.40 deleterious(0) probably_damaging(0.912) TCGA-EB-A5UL-06 20 43042383 43042383 G A HNF4A Silent p.E145E 0.14 TCGA-EB-A5UL-06 20 43936803 43936803 C T RBPJL Missense_Mutation p.P15S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-EB-A5UL-06 20 44439731 44439731 C T DNTTIP1 Missense_Mutation p.S296F 0.12 tolerated(0.09) benign(0.094) TCGA-EB-A5UL-06 20 45188578 45188578 G A SLC13A3 3'UTR 0.16 TCGA-EB-A5UL-06 20 45633718 45633718 C T EYA2 Missense_Mutation p.S98F 0.13 deleterious(0.01) possibly_damaging(0.809) TCGA-EB-A5UL-06 20 47865792 47865792 C A ZNFX1 Missense_Mutation p.G1257C 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 20 47989977 47989977 C T KCNB1 Missense_Mutation p.G707E 0.16 tolerated_low_confidence(1) benign(0.186) TCGA-EB-A5UL-06 20 57428441 57428441 G A GNAS Missense_Mutation p.A41T 0.44 deleterious_low_confidence(0.04) unknown(0) TCGA-EB-A5UL-06 21 33362482 33362482 C T HUNK Missense_Mutation p.A433V 0.11 tolerated_low_confidence(0.18) benign(0.05) TCGA-EB-A5UL-06 21 39580279 39580279 G A DSCR10 RNA 0.17 TCGA-EB-A5UL-06 21 45786783 45786783 C T TRPM2 Silent p.F190F 0.38 TCGA-EB-A5UL-06 21 46077965 46077965 C T KRTAP12-3 Silent p.S23S 0.35 TCGA-EB-A5UL-06 21 47361640 47361640 C T PCBP3 3'UTR 0.10 TCGA-EB-A5UL-06 22 18382265 18382265 G A MICAL3 Silent p.F299F 0.30 TCGA-EB-A5UL-06 22 18905833 18905833 G A PRODH Missense_Mutation p.H475Y 0.08 deleterious(0.05) benign(0.047) TCGA-EB-A5UL-06 22 19502376 19502376 C T CDC45 Missense_Mutation p.S473F 0.41 deleterious(0) probably_damaging(0.979) TCGA-EB-A5UL-06 22 23437892 23437892 C T GNAZ Missense_Mutation p.R4W 0.32 tolerated(0.1) probably_damaging(0.965) TCGA-EB-A5UL-06 22 26423240 26423240 G A MYO18B Missense_Mutation p.E2434K 0.36 deleterious(0.03) benign(0.166) TCGA-EB-A5UL-06 22 29611579 29611579 G A EMID1 Nonsense_Mutation p.W93* 0.25 TCGA-EB-A5UL-06 22 31532893 31532893 C T PLA2G3 Splice_Site p.X400_splice 0.23 TCGA-EB-A5UL-06 22 31534276 31534276 C T PLA2G3 Nonsense_Mutation p.W256* 0.23 TCGA-EB-A5UL-06 22 36587426 36587426 C T APOL4 Silent p.R250R 0.26 TCGA-EB-A5UL-06 22 36623971 36623971 T C APOL2 Missense_Mutation p.T165A 0.18 tolerated(0.19) benign(0.022) TCGA-EB-A5UL-06 22 37603702 37603702 G A SSTR3 Silent p.I47I 0.10 TCGA-EB-A5UL-06 22 39966806 39966806 G A CACNA1I Missense_Mutation p.A17T 0.44 tolerated_low_confidence(0.45) unknown(0) TCGA-EB-A5UL-06 22 40073418 40073418 A C CACNA1I Missense_Mutation p.K1643Q 0.20 deleterious(0.04) possibly_damaging(0.727) TCGA-EB-A5UL-06 22 42209358 42209358 C T CCDC134 Missense_Mutation p.S134F 0.23 tolerated(0.08) probably_damaging(0.996) TCGA-EB-A5UL-06 22 42537686 42537686 C T NDUFA6-AS1 3'Flank 0.11 TCGA-EB-A5UL-06 22 42607377 42607377 G A TCF20 Missense_Mutation p.P1312L 0.14 benign(0.158) TCGA-EB-A5UL-06 22 42607378 42607378 G A TCF20 Missense_Mutation p.P1312S 0.14 benign(0.011) TCGA-EB-A5UL-06 22 43272327 43272327 G A PACSIN2 Silent p.Y388Y 0.24 TCGA-EB-A5UL-06 22 50716104 50716104 G A PLXNB2 Silent p.V1704V 0.25 TCGA-EB-A5UL-06 22 50926457 50926457 G A MIOX Missense_Mutation p.R107Q 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 22 51160283 51160283 C T SHANK3 Missense_Mutation p.P1357L 0.21 benign(0.01) TCGA-EB-A5UL-06 2 102965706 102965706 G T IL1RL1 Missense_Mutation p.D429Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 2 107049701 107049701 G T RGPD3 Nonsense_Mutation p.S749* 0.15 TCGA-EB-A5UL-06 2 107459632 107459632 C T ST6GAL2 Missense_Mutation p.E268K 0.44 probably_damaging(0.941) TCGA-EB-A5UL-06 2 108624964 108624964 A G SLC5A7 Silent p.T313T 0.11 TCGA-EB-A5UL-06 2 109088547 109088547 G A GCC2 Missense_Mutation p.R921K 0.17 tolerated(0.09) benign(0.003) TCGA-EB-A5UL-06 2 125175121 125175121 C A CNTNAP5 Silent p.P161P 0.16 TCGA-EB-A5UL-06 2 130929996 130929996 G A SMPD4 Silent p.F234F 0.16 TCGA-EB-A5UL-06 2 133403025 133403025 G A GPR39 Missense_Mutation p.R403K 0.21 tolerated(0.37) benign(0.001) TCGA-EB-A5UL-06 2 136566574 136566574 C A LCT Nonsense_Mutation p.E1115* 0.22 TCGA-EB-A5UL-06 2 138330013 138330013 G A THSD7B Missense_Mutation p.D1107N 0.34 tolerated(0.19) unknown(0) TCGA-EB-A5UL-06 2 138421106 138421106 G A THSD7B Missense_Mutation p.D1541N 0.47 tolerated(0.09) unknown(0) TCGA-EB-A5UL-06 2 1488424 1488424 G A TPO Silent p.Q465Q 0.16 TCGA-EB-A5UL-06 2 149226897 149226897 C T MBD5 Missense_Mutation p.S462L 0.22 deleterious(0) possibly_damaging(0.504) TCGA-EB-A5UL-06 2 152128175 152128175 A C NMI Missense_Mutation p.S236A 0.20 deleterious(0.01) benign(0.097) TCGA-EB-A5UL-06 2 165586572 165586572 G A COBLL1 Missense_Mutation p.P95L 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 2 165987910 165987910 G A SCN3A Silent p.F803F 0.12 TCGA-EB-A5UL-06 2 169417815 169417815 G A CERS6 Silent p.T130T 0.14 TCGA-EB-A5UL-06 2 170127589 170127589 G A LRP2 Silent p.S715S 0.24 TCGA-EB-A5UL-06 2 179485339 179485339 C T TTN Silent p.R15303R 0.15 TCGA-EB-A5UL-06 2 179516203 179516203 T G TTN Missense_Mutation p.K13175T 0.20 TCGA-EB-A5UL-06 2 179552841 179552841 C T TTN Missense_Mutation p.E10770K 0.15 TCGA-EB-A5UL-06 2 179610611 179610611 C T TTN Intron 0.17 TCGA-EB-A5UL-06 2 179640771 179640771 C T TTN Silent p.R1940R 0.20 TCGA-EB-A5UL-06 2 179643732 179643732 T G TTN Missense_Mutation p.E1359D 0.10 TCGA-EB-A5UL-06 2 179702087 179702087 A T CCDC141 Missense_Mutation p.F1287I 0.17 deleterious(0.03) benign(0.192) TCGA-EB-A5UL-06 2 190670413 190670413 T C PMS1 Silent p.F117F 0.06 TCGA-EB-A5UL-06 2 190742075 190742075 G A PMS1 Missense_Mutation p.M904I 0.10 deleterious(0.05) benign(0.049) TCGA-EB-A5UL-06 2 206166306 206166306 G A PARD3B Silent p.T775T 0.19 TCGA-EB-A5UL-06 2 207620021 207620021 C T MDH1B Missense_Mutation p.A208T 0.24 deleterious(0) possibly_damaging(0.844) TCGA-EB-A5UL-06 2 210658513 210658513 C T UNC80 Missense_Mutation p.H290Y 0.38 possibly_damaging(0.516) TCGA-EB-A5UL-06 2 213872200 213872200 G A IKZF2 Missense_Mutation p.H489Y 0.22 deleterious(0) benign(0.424) TCGA-EB-A5UL-06 2 214878744 214878744 C T SPAG16 Silent p.S490S 0.13 TCGA-EB-A5UL-06 2 215440576 215440576 G A VWC2L 3'UTR 0.38 TCGA-EB-A5UL-06 2 219423410 219423410 A T USP37 Intron 0.17 TCGA-EB-A5UL-06 2 220355525 220355525 G A SPEG Missense_Mutation p.G3078S 0.12 benign(0.044) TCGA-EB-A5UL-06 2 224842293 224842293 G A SERPINE2 Missense_Mutation p.P387L 0.12 deleterious(0) probably_damaging(0.982) TCGA-EB-A5UL-06 2 226446754 226446754 C T NYAP2 Silent p.F207F 0.10 TCGA-EB-A5UL-06 2 228157946 228157946 G A COL4A3 Missense_Mutation p.E1084K 0.13 unknown(0) TCGA-EB-A5UL-06 2 230456371 230456371 C T DNER Silent p.Q170Q 0.44 TCGA-EB-A5UL-06 2 233272030 233272030 C T ALPPL2 Silent p.I73I 0.13 TCGA-EB-A5UL-06 2 239054411 239054411 T A KLHL30 Missense_Mutation p.M363K 0.24 deleterious(0) possibly_damaging(0.794) TCGA-EB-A5UL-06 2 242757930 242757953 GCAGCCTCGGGGGGATGGCCCCAG - NEU4 In_Frame_Del p.R353_P360del 0.28 TCGA-EB-A5UL-06 2 242758178 242758178 C G NEU4 Missense_Mutation p.S433C 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 2 27804745 27804745 C T C2orf16 Missense_Mutation p.P1769L 0.19 tolerated(0.11) benign(0.014) TCGA-EB-A5UL-06 2 31457456 31457456 G A EHD3 5'UTR 0.23 TCGA-EB-A5UL-06 2 31457457 31457457 G A EHD3 5'UTR 0.23 TCGA-EB-A5UL-06 2 38960712 38960712 G A GALM 3'UTR 0.20 TCGA-EB-A5UL-06 2 40656238 40656238 C T SLC8A1 Missense_Mutation p.E395K 0.21 tolerated(0.1) possibly_damaging(0.536) TCGA-EB-A5UL-06 2 54851971 54851971 G A SPTBN1 Missense_Mutation p.E405K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5UL-06 2 61236123 61236123 G A PUS10 Silent p.L52L 0.20 TCGA-EB-A5UL-06 3 111785270 111785270 C T TMPRSS7 Silent p.S403S 0.28 TCGA-EB-A5UL-06 3 113847728 113847728 G A DRD3 Silent p.F346F 0.24 TCGA-EB-A5UL-06 3 113890705 113890705 G A DRD3 Silent p.F45F 0.21 TCGA-EB-A5UL-06 3 114014634 114014634 G A TIGIT Missense_Mutation p.D102N 0.28 deleterious(0.03) probably_damaging(1) TCGA-EB-A5UL-06 3 120959317 120959317 C T STXBP5L Missense_Mutation p.L455F 0.31 tolerated(0.07) possibly_damaging(0.551) TCGA-EB-A5UL-06 3 121351304 121351304 G A HCLS1 Missense_Mutation p.P372L 0.28 tolerated(0.54) possibly_damaging(0.713) TCGA-EB-A5UL-06 3 12194959 12194959 G A TIMP4 3'UTR 0.14 TCGA-EB-A5UL-06 3 12200284 12200284 C G TIMP4 Silent p.A19A 0.16 TCGA-EB-A5UL-06 3 122632481 122632481 G A SEMA5B Missense_Mutation p.S781F 0.36 deleterious(0.04) possibly_damaging(0.694) TCGA-EB-A5UL-06 3 122645310 122645310 G A SEMA5B Silent p.Y409Y 0.16 TCGA-EB-A5UL-06 3 124646490 124646490 G A MUC13 Missense_Mutation p.P134S 0.07 tolerated(0.31) benign(0) TCGA-EB-A5UL-06 3 125828935 125828935 C T ALDH1L1 Silent p.K743K 0.10 TCGA-EB-A5UL-06 3 126202263 126202263 C T UROC1 Silent p.P673P 0.19 TCGA-EB-A5UL-06 3 128199961 128199961 G A GATA2 Silent p.H448H 0.47 TCGA-EB-A5UL-06 3 133119318 133119318 G A BFSP2 Missense_Mutation p.E131K 0.06 tolerated(0.21) probably_damaging(0.938) TCGA-EB-A5UL-06 3 134670822 134670822 G A EPHB1 Missense_Mutation p.E245K 0.16 tolerated(0.06) possibly_damaging(0.858) TCGA-EB-A5UL-06 3 134898705 134898705 C T EPHB1 Missense_Mutation p.S588F 0.24 tolerated(0.41) possibly_damaging(0.786) TCGA-EB-A5UL-06 3 142511691 142511691 A T TRPC1 Missense_Mutation p.D488V 0.28 tolerated(0.05) possibly_damaging(0.502) TCGA-EB-A5UL-06 3 147131324 147131324 G A ZIC1 Missense_Mutation p.E444K 0.08 deleterious(0) possibly_damaging(0.905) TCGA-EB-A5UL-06 3 150877744 150877744 G A MED12L Missense_Mutation p.M321I 0.27 tolerated(0.64) benign(0.002) TCGA-EB-A5UL-06 3 155200072 155200072 G A PLCH1 Missense_Mutation p.P1256L 0.19 tolerated_low_confidence(0.08) benign(0.339) TCGA-EB-A5UL-06 3 157820545 157820545 A G SHOX2 Silent p.F183F 0.07 TCGA-EB-A5UL-06 3 158364577 158364577 T C GFM1 Missense_Mutation p.L138S 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 3 159995214 159995214 G A IFT80 Missense_Mutation p.S660L 0.19 tolerated(0.14) benign(0.048) TCGA-EB-A5UL-06 3 17052819 17052819 C T PLCL2 Missense_Mutation p.P535S 0.20 deleterious(0.04) probably_damaging(0.951) TCGA-EB-A5UL-06 3 183777966 183777966 G A HTR3C Silent p.G390G 0.26 TCGA-EB-A5UL-06 3 184700833 184700833 G A VPS8 Missense_Mutation p.S1179N 0.41 tolerated(0.25) benign(0.005) TCGA-EB-A5UL-06 3 185879415 185879415 G A DGKG Missense_Mutation p.P752S 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 3 186953388 186953388 G A MASP1 3'UTR 0.50 TCGA-EB-A5UL-06 3 194080161 194080161 C G LRRC15 Missense_Mutation p.G544R 0.09 deleterious(0) possibly_damaging(0.9) TCGA-EB-A5UL-06 3 195447909 195447909 C T MUC20 Missense_Mutation p.L11F 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A5UL-06 3 29781274 29781274 G A RBMS3 Missense_Mutation p.E155K 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 3 3886862 3886862 G A LRRN1 Silent p.L179L 0.23 TCGA-EB-A5UL-06 3 7348231 7348231 C T GRM7 Missense_Mutation p.L309F 0.21 tolerated(0.15) benign(0.025) TCGA-EB-A5UL-06 3 87017853 87017853 G A VGLL3 Missense_Mutation p.P275L 0.08 deleterious(0) possibly_damaging(0.543) TCGA-EB-A5UL-06 3 97124035 97124035 C T EPHA6 Nonsense_Mutation p.Q550* 0.27 TCGA-EB-A5UL-06 3 97167461 97167461 T G EPHA6 Missense_Mutation p.V594G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5UL-06 3 9789167 9789167 G A BRPF1 3'UTR 0.38 TCGA-EB-A5UL-06 4 100504674 100504674 G T MTTP Missense_Mutation p.K131N 0.09 deleterious(0) probably_damaging(0.959) TCGA-EB-A5UL-06 4 109674142 109674142 C T ETNPPL Missense_Mutation p.G176E 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 4 11401063 11401063 C A HS3ST1 Missense_Mutation p.K189N 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A5UL-06 4 121958627 121958627 G A NDNF Missense_Mutation p.P167S 0.25 tolerated(0.55) probably_damaging(0.914) TCGA-EB-A5UL-06 4 1389530 1389530 C T CRIPAK Silent p.L411L 0.35 TCGA-EB-A5UL-06 4 144361297 144361297 A G GAB1 Silent p.P449P 0.37 TCGA-EB-A5UL-06 4 144361299 144361299 T A GAB1 Missense_Mutation p.M450K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 4 149357561 149357561 G A NR3C2 Missense_Mutation p.P151L 0.08 deleterious_low_confidence(0.01) benign(0.048) TCGA-EB-A5UL-06 4 153896865 153896865 A T FHDC1 Missense_Mutation p.M808L 0.14 tolerated(1) benign(0.001) TCGA-EB-A5UL-06 4 169632953 169632953 C T PALLD Missense_Mutation p.P615S 0.38 tolerated(0.22) benign(0.001) TCGA-EB-A5UL-06 4 173804030 173804030 G A GALNTL6 Missense_Mutation p.G338E 0.40 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 4 1746530 1746530 C T TACC3 Nonsense_Mutation p.Q808* 0.21 TCGA-EB-A5UL-06 4 25316963 25316963 C T ZCCHC4 Silent p.A90A 0.31 TCGA-EB-A5UL-06 4 25835099 25835099 C T SEL1L3 Missense_Mutation p.G318D 0.10 tolerated(0.61) benign(0.259) TCGA-EB-A5UL-06 4 26756568 26756568 G A TBC1D19 Silent p.%3D 0.12 TCGA-EB-A5UL-06 4 36149272 36149272 T G ARAP2 Silent p.R1033R 0.13 TCGA-EB-A5UL-06 4 39929628 39929628 G A PDS5A Missense_Mutation p.R99C 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 4 47405721 47405721 C T GABRB1 Silent p.V276V 0.30 TCGA-EB-A5UL-06 4 66280088 66280088 G A EPHA5 Missense_Mutation p.S534L 0.43 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A5UL-06 4 74124036 74124036 T C ANKRD17 Missense_Mutation p.E117G 0.04 benign(0.403) TCGA-EB-A5UL-06 5 122343598 122343598 C T SNX24 3'UTR 0.27 TCGA-EB-A5UL-06 5 131396680 131396680 G A IL3 Silent p.G61G 0.21 TCGA-EB-A5UL-06 5 134782113 134782113 G A C5orf20 Missense_Mutation p.P229L 0.17 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EB-A5UL-06 5 140167135 140167135 C T PCDHA1 Silent p.V420V 0.25 TCGA-EB-A5UL-06 5 140187583 140187583 G A PCDHA4 Missense_Mutation p.E271K 0.18 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-EB-A5UL-06 5 140209973 140209973 A G PCDHA6 Missense_Mutation p.K766R 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.889) TCGA-EB-A5UL-06 5 140241137 140241137 A C AC005609.1 3'UTR 0.15 TCGA-EB-A5UL-06 5 140263791 140263791 C T PCDHA13 Silent p.R646R 0.15 TCGA-EB-A5UL-06 5 140558223 140558223 G A PCDHB8 Missense_Mutation p.R203Q 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-EB-A5UL-06 5 140590082 140590082 G A PCDHB12 Missense_Mutation p.D535N 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A5UL-06 5 1422077 1422077 G A SLC6A3 Missense_Mutation p.P236S 0.27 deleterious(0.04) probably_damaging(0.984) TCGA-EB-A5UL-06 5 143586400 143586400 C T KCTD16 Silent p.S41S 0.19 TCGA-EB-A5UL-06 5 150029215 150029215 C T SYNPO Missense_Mutation p.R704C 0.22 deleterious(0) probably_damaging(0.984) TCGA-EB-A5UL-06 5 150275940 150275940 A C ZNF300 Missense_Mutation p.H303Q 0.09 tolerated(0.1) benign(0.182) TCGA-EB-A5UL-06 5 170736487 170736487 G T TLX3 Missense_Mutation p.G40C 0.31 tolerated(0.08) benign(0.31) TCGA-EB-A5UL-06 5 176516672 176516672 G A FGFR4 Silent p.E23E 0.26 TCGA-EB-A5UL-06 5 176813004 176813004 G A SLC34A1 Silent p.P42P 0.09 TCGA-EB-A5UL-06 5 176813005 176813005 G A SLC34A1 Missense_Mutation p.G43R 0.09 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-EB-A5UL-06 5 40854355 40854355 C T CARD6 Missense_Mutation p.S974F 0.28 deleterious(0.05) benign(0.36) TCGA-EB-A5UL-06 5 41039576 41039576 C T MROH2B Missense_Mutation p.E679K 0.45 tolerated(0.2) benign(0.019) TCGA-EB-A5UL-06 5 71739540 71739540 T G ZNF366 3'UTR 0.19 TCGA-EB-A5UL-06 5 75581618 75581618 G A SV2C Missense_Mutation p.D354N 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UL-06 5 75597248 75597248 C T SV2C Silent p.F626F 0.21 TCGA-EB-A5UL-06 5 75597249 75597249 C T SV2C Missense_Mutation p.L627F 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 5 78734972 78734972 C T HOMER1 Missense_Mutation p.E130K 0.21 tolerated(0.86) benign(0.03) TCGA-EB-A5UL-06 5 89938673 89938673 G A GPR98 Missense_Mutation p.E790K 0.18 possibly_damaging(0.636) TCGA-EB-A5UL-06 5 90041078 90041078 C T GPR98 Missense_Mutation p.P3589S 0.17 probably_damaging(0.992) TCGA-EB-A5UL-06 6 10877478 10877478 A G GCM2 Missense_Mutation p.S80P 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A5UL-06 6 110726086 110726086 G A DDO Nonsense_Mutation p.R145* 0.42 TCGA-EB-A5UL-06 6 133785973 133785973 A C EYA4 Missense_Mutation p.T261P 0.22 tolerated(0.11) possibly_damaging(0.733) TCGA-EB-A5UL-06 6 142399728 142399728 A G NMBR Silent p.N245N 0.26 TCGA-EB-A5UL-06 6 142399729 142399729 T A NMBR Missense_Mutation p.N245I 0.26 deleterious(0) possibly_damaging(0.863) TCGA-EB-A5UL-06 6 154568615 154568615 G A IPCEF1 Missense_Mutation p.P15L 0.37 deleterious(0) benign(0.394) TCGA-EB-A5UL-06 6 154568616 154568616 G A IPCEF1 Missense_Mutation p.P15S 0.37 tolerated(0.83) benign(0.042) TCGA-EB-A5UL-06 6 18258628 18258628 G A DEK Missense_Mutation p.L52F 0.27 deleterious(0.02) benign(0.188) TCGA-EB-A5UL-06 6 25701567 25701567 C T SCGN 3'UTR 0.28 TCGA-EB-A5UL-06 6 25726741 25726741 C T HIST1H2AA Silent p.G5G 0.18 TCGA-EB-A5UL-06 6 27420654 27420654 C T ZNF184 Silent p.G228G 0.04 TCGA-EB-A5UL-06 6 29365202 29365202 C T OR12D2 Silent p.S242S 0.17 TCGA-EB-A5UL-06 6 2948628 2948628 G A SERPINB6 Silent p.F345F 0.29 TCGA-EB-A5UL-06 6 31477560 31477560 G C MICB Missense_Mutation p.E342D 0.05 tolerated(0.21) probably_damaging(0.979) TCGA-EB-A5UL-06 6 31541284 31541284 C T LTA Silent p.F144F 0.31 TCGA-EB-A5UL-06 6 31914840 31914840 C T CFB Missense_Mutation p.P621S 0.45 tolerated(0.78) benign(0.012) TCGA-EB-A5UL-06 6 31975146 31975146 G A C4A 3'Flank 0.12 TCGA-EB-A5UL-06 6 32974972 32974972 G A HLA-DOA Missense_Mutation p.P212S 0.34 tolerated(0.07) benign(0.159) TCGA-EB-A5UL-06 6 33541565 33541565 G C BAK1 3'UTR 0.20 TCGA-EB-A5UL-06 6 35554884 35554884 G A FKBP5 Missense_Mutation p.S256F 0.18 deleterious(0.03) benign(0.391) TCGA-EB-A5UL-06 6 36169300 36169300 C T BRPF3 Missense_Mutation p.P401S 0.18 tolerated(0.35) benign(0.08) TCGA-EB-A5UL-06 6 38828377 38828377 C T DNAH8 Missense_Mutation p.R1818C 0.26 probably_damaging(1) TCGA-EB-A5UL-06 6 41011331 41011331 G A TSPO2 Missense_Mutation p.G70E 0.14 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UL-06 6 42162358 42162358 C T GUCA1B Silent p.K67K 0.28 TCGA-EB-A5UL-06 6 43013087 43013087 C A CUL7 Silent p.T1056T 0.08 TCGA-EB-A5UL-06 6 51889700 51889700 C T PKHD1 Silent p.L1636L 0.31 TCGA-EB-A5UL-06 6 57512603 57512603 C T PRIM2 3'UTR 0.07 TCGA-EB-A5UL-06 6 66053984 66053984 C T EYS Missense_Mutation p.D516N 0.45 tolerated(0.5) benign(0) TCGA-EB-A5UL-06 6 70042896 70042896 G A BAI3 Missense_Mutation p.A1062T 0.32 deleterious(0.02) benign(0.41) TCGA-EB-A5UL-06 6 75875285 75875285 G A COL12A1 Missense_Mutation p.S974L 0.33 probably_damaging(0.997) TCGA-EB-A5UL-06 6 83075656 83075656 G A TPBG Silent p.P326P 0.28 TCGA-EB-A5UL-06 6 83075657 83075657 G A TPBG Missense_Mutation p.E327K 0.28 tolerated(0.17) benign(0.088) TCGA-EB-A5UL-06 6 83754240 83754240 G A UBE3D Silent p.F168F 0.13 TCGA-EB-A5UL-06 6 88855056 88855056 C T CNR1 Intron 0.33 TCGA-EB-A5UL-06 7 100678470 100678470 C T MUC17 Missense_Mutation p.S1258F 0.13 unknown(0) TCGA-EB-A5UL-06 7 100701293 100701293 C T MUC17 Nonsense_Mutation p.Q4484* 0.16 TCGA-EB-A5UL-06 7 100731199 100731199 C T TRIM56 Silent p.C202C 0.12 TCGA-EB-A5UL-06 7 107688540 107688540 C T LAMB4 Missense_Mutation p.G1380E 0.22 tolerated(0.11) benign(0.091) TCGA-EB-A5UL-06 7 111981074 111981074 C T ZNF277 Missense_Mutation p.P386L 0.14 deleterious(0.03) possibly_damaging(0.733) TCGA-EB-A5UL-06 7 122634823 122634823 C T TAS2R16 Missense_Mutation p.G289E 0.28 tolerated(1) benign(0.066) TCGA-EB-A5UL-06 7 128034345 128034345 G A IMPDH1 Missense_Mutation p.H589Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UL-06 7 134853736 134853736 G A C7orf49 5'UTR 0.25 TCGA-EB-A5UL-06 7 138958809 138958809 G A UBN2 Nonsense_Mutation p.W654* 0.43 TCGA-EB-A5UL-06 7 139092010 139092010 G T LUC7L2 Missense_Mutation p.D267Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 7 141765569 141765569 C T MGAM Intron 0.36 TCGA-EB-A5UL-06 7 141773931 141773931 G A MGAM Intron 0.12 TCGA-EB-A5UL-06 7 142651282 142651282 C T KEL Missense_Mutation p.D305N 0.10 tolerated(0.4) benign(0.035) TCGA-EB-A5UL-06 7 143701854 143701854 C A OR6B1 Missense_Mutation p.F255L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 7 144101650 144101650 G A NOBOX Missense_Mutation p.S70L 0.47 deleterious_low_confidence(0) benign(0.013) TCGA-EB-A5UL-06 7 14880842 14880842 G A DGKB Missense_Mutation p.S16F 0.29 deleterious(0.04) benign(0.142) TCGA-EB-A5UL-06 7 1522258 1522258 C T INTS1 Silent p.S1209S 0.15 TCGA-EB-A5UL-06 7 154143320 154143320 C T DPP6 Missense_Mutation p.P89S 0.36 tolerated(0.06) probably_damaging(0.983) TCGA-EB-A5UL-06 7 157370803 157370803 G A PTPRN2 Silent p.I842I 0.49 TCGA-EB-A5UL-06 7 2473033 2473033 C T CHST12 Silent p.S253S 0.15 TCGA-EB-A5UL-06 7 24738754 24738754 C T DFNA5 Missense_Mutation p.R461K 0.43 tolerated(0.46) benign(0.209) TCGA-EB-A5UL-06 7 27148121 27148121 C T HOXA3 Missense_Mutation p.D249N 0.30 deleterious(0) possibly_damaging(0.727) TCGA-EB-A5UL-06 7 30693066 30693066 G A CRHR2 3'UTR 0.25 TCGA-EB-A5UL-06 7 6624812 6624812 T G ZDHHC4 Missense_Mutation p.V221G 0.38 deleterious(0) benign(0.345) TCGA-EB-A5UL-06 7 72413237 72413237 C T POM121 Missense_Mutation p.S637F 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A5UL-06 7 76984935 76984935 G A GSAP Missense_Mutation p.H353Y 0.39 tolerated(0.11) benign(0.02) TCGA-EB-A5UL-06 7 80088100 80088100 C T GNAT3 Missense_Mutation p.E318K 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A5UL-06 7 82583161 82583161 C T PCLO Missense_Mutation p.E2370K 0.10 unknown(0) TCGA-EB-A5UL-06 7 92760770 92760770 G A SAMD9L Silent p.S1505S 0.12 TCGA-EB-A5UL-06 7 99454465 99454465 G T CYP3A43 Missense_Mutation p.D270Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UL-06 8 104054585 104054585 C T ATP6V1C1 Silent p.V50V 0.32 TCGA-EB-A5UL-06 8 113323217 113323217 A T CSMD3 Silent p.P2625P 0.16 TCGA-EB-A5UL-06 8 124518793 124518793 A G FBXO32 Missense_Mutation p.F225L 0.21 tolerated(1) benign(0.001) TCGA-EB-A5UL-06 8 139153554 139153554 G A FAM135B Missense_Mutation p.S1226L 0.29 deleterious(0.02) possibly_damaging(0.751) TCGA-EB-A5UL-06 8 143365802 143365802 G A TSNARE1 Silent p.S445S 0.13 TCGA-EB-A5UL-06 8 143921887 143921887 C T GML Missense_Mutation p.L12F 0.14 tolerated(0.09) unknown(0) TCGA-EB-A5UL-06 8 17157340 17157340 G A MTMR7 3'UTR 0.19 TCGA-EB-A5UL-06 8 17743002 17743002 G A FGL1 Missense_Mutation p.S21L 0.21 tolerated(0.34) benign(0) TCGA-EB-A5UL-06 8 22107920 22107920 C T POLR3D Silent p.S362S 0.30 TCGA-EB-A5UL-06 8 24193159 24193159 G A ADAM28 Intron 0.21 TCGA-EB-A5UL-06 8 26510829 26510829 C T DPYSL2 Missense_Mutation p.P515S 0.16 tolerated(0.06) benign(0.24) TCGA-EB-A5UL-06 8 28017827 28017827 T C ELP3 Silent p.L447L 0.10 TCGA-EB-A5UL-06 8 37630369 37630369 T C PROSC Missense_Mutation p.L139S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UL-06 8 38065264 38065264 C T BAG4 Missense_Mutation p.P205S 0.17 tolerated(0.1) benign(0.019) TCGA-EB-A5UL-06 8 38275784 38275784 C T FGFR1 Silent p.E495E 0.20 TCGA-EB-A5UL-06 8 41518963 41518963 T G ANK1 Intron 0.15 TCGA-EB-A5UL-06 8 42587504 42587504 C T CHRNB3 Missense_Mutation p.H352Y 0.17 tolerated(0.77) possibly_damaging(0.609) TCGA-EB-A5UL-06 8 53084615 53084615 C T ST18 Missense_Mutation p.G269D 0.20 tolerated(0.28) benign(0.001) TCGA-EB-A5UL-06 8 53084616 53084616 C T ST18 Missense_Mutation p.G269S 0.20 tolerated(0.38) benign(0.001) TCGA-EB-A5UL-06 8 69002832 69002832 C T PREX2 Missense_Mutation p.A711V 0.10 tolerated(0.24) possibly_damaging(0.842) TCGA-EB-A5UL-06 8 8235435 8235435 C T SGK223 Missense_Mutation p.V162I 0.24 benign(0.112) TCGA-EB-A5UL-06 8 95262811 95262811 C T GEM Silent p.G206G 0.19 TCGA-EB-A5UL-06 9 100092778 100092778 A G CCDC180 Missense_Mutation p.E712G 0.13 tolerated(0.15) benign(0.297) TCGA-EB-A5UL-06 9 110250264 110250264 C T KLF4 Silent p.S137S 0.31 TCGA-EB-A5UL-06 9 111899872 111899872 C T FRRS1L Missense_Mutation p.A300T 0.17 tolerated(0.81) benign(0.002) TCGA-EB-A5UL-06 9 114176709 114176709 C G KIAA0368 Missense_Mutation p.G841R 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A5UL-06 9 116837244 116837244 T A AMBP Missense_Mutation p.K111N 0.47 tolerated(0.7) benign(0.02) TCGA-EB-A5UL-06 9 117139581 117139581 C T AKNA Missense_Mutation p.R169K 0.24 tolerated(0.4) benign(0.079) TCGA-EB-A5UL-06 9 120474738 120474738 G C TLR4 Missense_Mutation p.G111A 0.19 tolerated(0.41) probably_damaging(0.997) TCGA-EB-A5UL-06 9 121930123 121930123 C T BRINP1 Missense_Mutation p.E509K 0.15 deleterious(0) possibly_damaging(0.905) TCGA-EB-A5UL-06 9 130509465 130509465 G A SH2D3C Missense_Mutation p.P409S 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A5UL-06 9 130982352 130982354 CCC TT DNM1 Frame_Shift_Del p.P226Sfs*10 0.31 TCGA-EB-A5UL-06 9 131476520 131476520 G A PKN3 Missense_Mutation p.A453T 0.18 tolerated(1) benign(0.098) TCGA-EB-A5UL-06 9 134074074 134074074 C T NUP214 Silent p.V1731V 0.19 TCGA-EB-A5UL-06 9 135926235 135926235 C G GTF3C5 Missense_Mutation p.P213R 0.12 tolerated(0.09) benign(0.078) TCGA-EB-A5UL-06 9 135973898 135973898 A C RALGDS 3'UTR 0.40 TCGA-EB-A5UL-06 9 136200572 136200572 G A SURF6 Silent p.I125I 0.15 TCGA-EB-A5UL-06 9 137620554 137620554 C T COL5A1 Silent p.Y275Y 0.34 TCGA-EB-A5UL-06 9 139740250 139740250 C T C9orf172 Missense_Mutation p.P462S 0.32 tolerated(0.19) benign(0.047) TCGA-EB-A5UL-06 9 34552752 34552752 C T CNTFR Nonsense_Mutation p.W290* 0.28 TCGA-EB-A5UL-06 9 3828306 3828306 G A GLIS3 Missense_Mutation p.P920L 0.19 tolerated(0.78) possibly_damaging(0.726) TCGA-EB-A5UL-06 9 5361160 5361160 G A PLGRKT Silent p.F80F 0.22 TCGA-EB-A5UL-06 9 93650893 93650893 C T SYK Silent p.L607L 0.29 TCGA-EB-A5UL-06 9 98638274 98638274 C A ERCC6L2 5'UTR 0.45 TCGA-EB-A5UL-06 X 104999313 104999313 C T IL1RAPL2 Silent p.I445I 0.28 TCGA-EB-A5UL-06 X 105152738 105152738 G A NRK Missense_Mutation p.E370K 0.29 tolerated_low_confidence(0.07) benign(0.234) TCGA-EB-A5UL-06 X 105152793 105152793 G A NRK Missense_Mutation p.G388E 0.41 deleterious(0.02) possibly_damaging(0.56) TCGA-EB-A5UL-06 X 123785786 123785786 T G TENM1 Silent p.V519V 0.47 TCGA-EB-A5UL-06 X 125686565 125686565 C G DCAF12L1 Missense_Mutation p.R9S 0.31 tolerated(0.06) benign(0.231) TCGA-EB-A5UL-06 X 130412495 130412495 G A IGSF1 Missense_Mutation p.H666Y 0.56 tolerated(0.24) probably_damaging(0.998) TCGA-EB-A5UL-06 X 140994042 140994042 C T MAGEC1 Silent p.F284F 0.30 TCGA-EB-A5UL-06 X 1428420 1428420 C T CSF2RA 3'UTR 0.30 TCGA-EB-A5UL-06 X 14937839 14937839 C T MOSPD2 Nonsense_Mutation p.Q489* 0.54 TCGA-EB-A5UL-06 X 153585864 153585864 G A FLNA Missense_Mutation p.P1628L 0.59 deleterious(0.01) possibly_damaging(0.872) TCGA-EB-A5UL-06 X 23897032 23897032 C A APOO Missense_Mutation p.Q79H 0.38 deleterious(0) probably_damaging(0.971) TCGA-EB-A5UL-06 X 3239262 3239262 C T MXRA5 Missense_Mutation p.M1488I 0.27 tolerated(0.22) benign(0) TCGA-EB-A5UL-06 X 35974126 35974126 C T CXorf22 Missense_Mutation p.P408L 0.58 deleterious(0) probably_damaging(0.995) TCGA-EB-A5UL-06 X 39933022 39933022 G A BCOR Missense_Mutation p.S526L 0.49 tolerated(0.53) benign(0.001) TCGA-EB-A5UL-06 X 41043842 41043842 T C USP9X Silent p.L1158L 0.77 TCGA-EB-A5UL-06 X 45059938 45059938 C T CXorf36 Missense_Mutation p.R45K 0.18 tolerated_low_confidence(0.74) benign(0.021) TCGA-EB-A5UL-06 X 70602452 70602452 C T TAF1 Missense_Mutation p.S555F 0.30 tolerated(0.69) possibly_damaging(0.857) TCGA-EB-A5UM-01 10 102747982 102747982 C T C10orf2 Silent p.L5L 0.35 TCGA-EB-A5UM-01 10 113920500 113920500 C T GPAM Missense_Mutation p.G541R 0.10 tolerated(0.1) probably_damaging(0.953) TCGA-EB-A5UM-01 10 116046208 116046208 C T VWA2 Missense_Mutation p.P503L 0.32 deleterious(0.02) probably_damaging(0.924) TCGA-EB-A5UM-01 10 116734118 116734118 G A TRUB1 Missense_Mutation p.R256K 0.31 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UM-01 10 124608757 124608757 C T CUZD1 5'UTR 0.18 TCGA-EB-A5UM-01 10 124813301 124813301 C T ACADSB 3'UTR 0.42 TCGA-EB-A5UM-01 10 125426527 125426527 C T GPR26 Missense_Mutation p.H202Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 10 127760187 127760187 C T ADAM12 Silent p.R397R 0.26 TCGA-EB-A5UM-01 10 135080885 135080885 G A ADAM8 Missense_Mutation p.P764S 0.16 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UM-01 10 15255128 15255128 G A FAM171A1 Missense_Mutation p.S820L 0.41 tolerated(0.21) benign(0.081) TCGA-EB-A5UM-01 10 18242413 18242413 G A SLC39A12 Missense_Mutation p.E70K 0.24 tolerated(0.12) benign(0.41) TCGA-EB-A5UM-01 10 20500609 20500609 G A PLXDC2 Missense_Mutation p.G358E 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UM-01 10 22045606 22045606 C T DNAJC1 3'UTR 0.32 TCGA-EB-A5UM-01 10 26792174 26792174 G A APBB1IP Missense_Mutation p.E168K 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A5UM-01 10 61831288 61831288 G A ANK3 Silent p.I3117I 0.35 TCGA-EB-A5UM-01 10 64573331 64573331 T C EGR2 Missense_Mutation p.E356G 0.38 deleterious(0) possibly_damaging(0.72) TCGA-EB-A5UM-01 10 70332442 70332442 C T TET1 Missense_Mutation p.S116F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 10 71871413 71871413 G A H2AFY2 Missense_Mutation p.E365K 0.33 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UM-01 10 72292493 72292493 G A PALD1 Silent p.T250T 0.34 TCGA-EB-A5UM-01 10 76735447 76735447 C T KAT6B Missense_Mutation p.S451L 0.34 benign(0.066) TCGA-EB-A5UM-01 10 76803759 76803759 G A DUPD1 Missense_Mutation p.R73C 0.33 deleterious(0.01) benign(0.219) TCGA-EB-A5UM-01 10 7765505 7765505 C T ITIH2 Missense_Mutation p.S320F 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 10 79745903 79745903 G A POLR3A Silent p.F972F 0.26 TCGA-EB-A5UM-01 10 86001186 86001186 C T LRIT1 Missense_Mutation p.A4T 0.39 tolerated(0.16) possibly_damaging(0.554) TCGA-EB-A5UM-01 10 88459044 88459044 T A LDB3 Intron 0.32 TCGA-EB-A5UM-01 10 88704978 88704978 C T MMRN2 Missense_Mutation p.E150K 0.38 deleterious(0.03) benign(0.086) TCGA-EB-A5UM-01 10 90356597 90356597 C T LIPJ Silent p.F209F 0.29 TCGA-EB-A5UM-01 10 90966332 90966332 C T CH25H Missense_Mutation p.D240N 0.29 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UM-01 10 92509171 92509171 C T HTR7 Silent p.T240T 0.35 TCGA-EB-A5UM-01 10 92678690 92678690 G A ANKRD1 Silent p.L129L 0.30 TCGA-EB-A5UM-01 10 95347040 95347040 C T FFAR4 Missense_Mutation p.R270C 0.35 deleterious(0) probably_damaging(0.932) TCGA-EB-A5UM-01 10 95791092 95791092 G A PLCE1 Missense_Mutation p.D97N 0.42 tolerated_low_confidence(0.1) benign(0.002) TCGA-EB-A5UM-01 10 96012146 96012146 G A PLCE1 Missense_Mutation p.R1057Q 0.33 tolerated(0.09) possibly_damaging(0.848) TCGA-EB-A5UM-01 10 96201713 96201713 G A TBC1D12 Nonsense_Mutation p.W344* 0.38 TCGA-EB-A5UM-01 10 96350468 96350468 C T HELLS Missense_Mutation p.R568C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 10 97031403 97031403 G T PDLIM1 Missense_Mutation p.L79I 0.30 deleterious(0.02) possibly_damaging(0.58) TCGA-EB-A5UM-01 10 99344520 99344520 G A PI4K2A Silent p.R20R 0.12 TCGA-EB-A5UM-01 10 99969332 99969332 G A R3HCC1L Silent p.L487L 0.28 TCGA-EB-A5UM-01 10 99969333 99969333 G A R3HCC1L Missense_Mutation p.D488N 0.30 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 10 99969334 99969334 A T R3HCC1L Missense_Mutation p.D488V 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 11 1026397 1026397 C T MUC6 Missense_Mutation p.E826K 0.29 unknown(0) TCGA-EB-A5UM-01 11 1081669 1081669 G A MUC2 Missense_Mutation p.G533S 0.28 probably_damaging(0.998) TCGA-EB-A5UM-01 11 10823691 10823691 G A EIF4G2 Missense_Mutation p.R402C 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UM-01 11 1093885 1093885 G A MUC2 Missense_Mutation p.G1902R 0.37 unknown(0) TCGA-EB-A5UM-01 11 113286220 113286220 G A DRD2 Missense_Mutation p.L216F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 11 114112908 114112908 C T ZBTB16 Silent p.F491F 0.41 TCGA-EB-A5UM-01 11 117985983 117985983 G A TMPRSS4 Silent p.V380V 0.13 TCGA-EB-A5UM-01 11 121058694 121058694 C T TECTA Silent p.S2051S 0.25 TCGA-EB-A5UM-01 11 122650289 122650289 C T UBASH3B Missense_Mutation p.P163S 0.31 tolerated(0.34) probably_damaging(0.972) TCGA-EB-A5UM-01 11 1271141 1271141 C T MUC5B Missense_Mutation p.P4344L 0.21 benign(0.003) TCGA-EB-A5UM-01 11 1279559 1279559 G A MUC5B Splice_Site p.X5519_splice 0.21 TCGA-EB-A5UM-01 11 128844001 128844001 G A ARHGAP32 Intron 0.27 TCGA-EB-A5UM-01 11 130278705 130278705 G A ADAMTS8 Silent p.C627C 0.34 TCGA-EB-A5UM-01 11 134076610 134076610 G A NCAPD3 Silent p.F300F 0.22 TCGA-EB-A5UM-01 11 1579116 1579116 G A DUSP8 Silent p.I243I 0.33 TCGA-EB-A5UM-01 11 1642939 1642939 C T KRTAP5-4 Missense_Mutation p.G129R 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-EB-A5UM-01 11 18478224 18478224 C T LDHAL6A 5'UTR 0.44 TCGA-EB-A5UM-01 11 30033920 30033920 G A KCNA4 Silent p.F102F 0.27 TCGA-EB-A5UM-01 11 30253455 30253455 G A FSHB Silent p.K2K 0.24 TCGA-EB-A5UM-01 11 3424150 3424150 G A TSSC2 RNA 0.57 TCGA-EB-A5UM-01 11 3661381 3661381 C T ART5 Missense_Mutation p.G93E 0.35 deleterious(0.02) possibly_damaging(0.562) TCGA-EB-A5UM-01 11 36614241 36614241 C T RAG2 Missense_Mutation p.R493K 0.36 tolerated(1) possibly_damaging(0.815) TCGA-EB-A5UM-01 11 4104571 4104571 C T STIM1 Silent p.F439F 0.33 TCGA-EB-A5UM-01 11 4566549 4566549 G A OR52M1 Silent p.G43G 0.32 TCGA-EB-A5UM-01 11 46388880 46388880 C A DGKZ Silent p.P256P 0.27 TCGA-EB-A5UM-01 11 48346845 48346845 C T OR4C3 Missense_Mutation p.S118F 0.13 deleterious(0.03) benign(0.178) TCGA-EB-A5UM-01 11 4842843 4842843 C T OR51F2 Silent p.F76F 0.34 TCGA-EB-A5UM-01 11 49208241 49208241 C T FOLH1 Silent p.G198G 0.25 TCGA-EB-A5UM-01 11 49831844 49831844 C T RP11-707M1.1 RNA 0.14 TCGA-EB-A5UM-01 11 5020857 5020857 C T OR51L1 Silent p.F215F 0.32 TCGA-EB-A5UM-01 11 51412038 51412038 G A OR4A5 Missense_Mutation p.R120C 0.25 deleterious_low_confidence(0.03) benign(0.035) TCGA-EB-A5UM-01 11 5461959 5461959 C T OR51I1 Missense_Mutation p.M262I 0.36 tolerated(0.25) benign(0.076) TCGA-EB-A5UM-01 11 5475368 5475368 C T OR51I2 Missense_Mutation p.S217F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 11 5536874 5536874 C T UBQLNL Silent p.G266G 0.31 TCGA-EB-A5UM-01 11 5701270 5701270 G A TRIM5 Silent p.S46S 0.25 TCGA-EB-A5UM-01 11 57995639 57995639 C T OR10Q1 Missense_Mutation p.E237K 0.44 tolerated(0.07) benign(0.127) TCGA-EB-A5UM-01 11 58034973 58034973 G A OR10W1 Missense_Mutation p.P120S 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 11 61557337 61557337 G A TMEM258 Missense_Mutation p.S57F 0.33 deleterious(0.02) benign(0.104) TCGA-EB-A5UM-01 11 62284730 62284730 G A AHNAK Missense_Mutation p.S5720F 0.33 probably_damaging(0.999) TCGA-EB-A5UM-01 11 63174006 63174006 C T SLC22A9 Missense_Mutation p.H371Y 0.25 deleterious(0) probably_damaging(0.934) TCGA-EB-A5UM-01 11 65788408 65788408 G A CATSPER1 Missense_Mutation p.L601F 0.24 tolerated(0.07) possibly_damaging(0.679) TCGA-EB-A5UM-01 11 66099995 66099995 G A RIN1 Missense_Mutation p.R702C 0.37 deleterious(0.02) benign(0.081) TCGA-EB-A5UM-01 11 7022616 7022616 G A ZNF214 Missense_Mutation p.R100C 0.34 tolerated(0.06) benign(0.001) TCGA-EB-A5UM-01 11 71927862 71927862 G A FOLR2 5'UTR 0.40 TCGA-EB-A5UM-01 11 75152211 75152211 G A GDPD5 Silent p.I490I 0.44 TCGA-EB-A5UM-01 11 77412442 77412442 G A RSF1 Missense_Mutation p.P611L 0.34 tolerated_low_confidence(0.44) benign(0.049) TCGA-EB-A5UM-01 11 77775323 77775323 G A THRSP Silent p.Q132Q 0.14 TCGA-EB-A5UM-01 11 7847435 7847435 G A OR5P3 Missense_Mutation p.L29F 0.27 deleterious(0.03) benign(0.09) TCGA-EB-A5UM-01 11 792389 792389 G A SLC25A22 Silent p.S219S 0.28 TCGA-EB-A5UM-01 11 792390 792390 G A SLC25A22 Missense_Mutation p.S219F 0.30 deleterious(0.05) benign(0.035) TCGA-EB-A5UM-01 11 7982181 7982181 G A NLRP10 Silent p.S326S 0.38 TCGA-EB-A5UM-01 11 803399 803399 C T PIDD Missense_Mutation p.E162K 0.36 tolerated(0.39) probably_damaging(0.932) TCGA-EB-A5UM-01 11 837513 837513 C T CD151 Silent p.I170I 0.33 TCGA-EB-A5UM-01 11 8959407 8959407 C T ASCL3 Missense_Mutation p.R101Q 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 11 8959517 8959517 G A ASCL3 Silent p.I64I 0.35 TCGA-EB-A5UM-01 12 122862265 122862265 G A CLIP1 Nonsense_Mutation p.Q110* 0.63 TCGA-EB-A5UM-01 12 13102842 13102842 C T GPRC5D Silent p.V159V 0.53 TCGA-EB-A5UM-01 12 14766139 14766139 T C GUCY2C Missense_Mutation p.Q1045R 0.50 tolerated(1) benign(0) TCGA-EB-A5UM-01 12 20766564 20766564 C T PDE3A Missense_Mutation p.S400L 0.53 tolerated(0.08) benign(0.069) TCGA-EB-A5UM-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.51 deleterious(0.01) benign(0.279) TCGA-EB-A5UM-01 12 25380278 25380278 A C KRAS Silent p.G60G 0.52 TCGA-EB-A5UM-01 12 26714700 26714700 A G ITPR2 Silent p.L1606L 0.13 TCGA-EB-A5UM-01 12 2711115 2711115 C T CACNA1C Silent p.S1003S 0.22 TCGA-EB-A5UM-01 12 31600667 31600667 G A DENND5B Missense_Mutation p.P556S 0.36 deleterious(0.01) probably_damaging(0.973) TCGA-EB-A5UM-01 12 39994500 39994500 G A ABCD2 Missense_Mutation p.L507F 0.08 deleterious(0.01) benign(0.13) TCGA-EB-A5UM-01 12 40078671 40078671 G A C12orf40 Missense_Mutation p.G430E 0.14 tolerated(0.26) benign(0.299) TCGA-EB-A5UM-01 12 48063895 48063895 G A RPAP3 Silent p.S507S 0.10 TCGA-EB-A5UM-01 12 48884600 48884600 G A C12orf54 Silent p.Q58Q 0.10 TCGA-EB-A5UM-01 12 50474494 50474494 C T ASIC1 Silent p.P473P 0.10 TCGA-EB-A5UM-01 12 52163718 52163718 C T SCN8A Missense_Mutation p.P1147S 0.42 tolerated(0.34) benign(0.026) TCGA-EB-A5UM-01 12 52908816 52908816 C A KRT5 Silent p.L561L 0.10 TCGA-EB-A5UM-01 12 53068901 53068901 C T KRT1 3'UTR 0.13 TCGA-EB-A5UM-01 12 53238457 53238457 G A KRT78 Silent p.S269S 0.13 TCGA-EB-A5UM-01 12 55641265 55641265 C T OR6C74 Missense_Mutation p.S65L 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EB-A5UM-01 12 56848172 56848172 G A MIP Missense_Mutation p.L76F 0.49 tolerated(0.11) probably_damaging(0.995) TCGA-EB-A5UM-01 12 56848174 56848174 A T MIP Missense_Mutation p.F75Y 0.49 tolerated(0.24) benign(0.156) TCGA-EB-A5UM-01 12 5939642 5939642 C T ANO2 Missense_Mutation p.E263K 0.38 deleterious(0.01) benign(0.075) TCGA-EB-A5UM-01 12 6094773 6094773 C T VWF Missense_Mutation p.G2286E 0.41 tolerated(0.14) probably_damaging(0.993) TCGA-EB-A5UM-01 12 64895232 64895232 C T TBK1 3'UTR 0.76 TCGA-EB-A5UM-01 12 7016547 7016547 C T LRRC23 Missense_Mutation p.R187W 0.50 deleterious(0) probably_damaging(0.988) TCGA-EB-A5UM-01 12 71551479 71551479 C T TSPAN8 5'UTR 0.72 TCGA-EB-A5UM-01 12 7242295 7242295 C T C1R Silent p.G152G 0.29 TCGA-EB-A5UM-01 12 7633762 7633762 G A CD163 Missense_Mutation p.S1113F 0.28 tolerated(0.11) possibly_damaging(0.653) TCGA-EB-A5UM-01 12 81112769 81112769 C T MYF5 Missense_Mutation p.T236I 0.66 tolerated(0.21) benign(0.001) TCGA-EB-A5UM-01 12 8375212 8375212 C T FAM90A1 Missense_Mutation p.E201K 0.26 tolerated(0.44) benign(0.024) TCGA-EB-A5UM-01 12 8376712 8376712 C T FAM90A1 Missense_Mutation p.E75K 0.49 tolerated(1) benign(0.001) TCGA-EB-A5UM-01 12 96292383 96292383 G A CCDC38 Nonsense_Mutation p.R166* 0.65 TCGA-EB-A5UM-01 13 110831649 110831649 C T COL4A1 Silent p.A771A 0.36 TCGA-EB-A5UM-01 13 19755913 19755913 C A TUBA3C 5'UTR 0.17 TCGA-EB-A5UM-01 13 32850603 32850603 C T FRY Silent p.L2763L 0.31 TCGA-EB-A5UM-01 13 49852569 49852569 C T CDADC1 Silent p.F378F 0.39 TCGA-EB-A5UM-01 13 76391391 76391391 G A LMO7 Missense_Mutation p.E448K 0.32 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UM-01 14 105407986 105407986 G A AHNAK2 Missense_Mutation p.P4601L 0.14 benign(0.054) TCGA-EB-A5UM-01 14 105410338 105410340 GCA CT AHNAK2 Frame_Shift_Del p.P3818Qfs*20 0.24 TCGA-EB-A5UM-01 14 106236253 106236253 G A IGHG3 Silent p.S184S 0.33 TCGA-EB-A5UM-01 14 106237585 106237585 G A IGHG3 Silent p.F53F 0.35 TCGA-EB-A5UM-01 14 106692132 106692132 C T IGHV3-21 5'UTR 0.29 TCGA-EB-A5UM-01 14 107035167 107035167 G A IGHV5-51 5'UTR 0.43 TCGA-EB-A5UM-01 14 21795958 21795958 C T RPGRIP1 Missense_Mutation p.P963S 0.28 tolerated(0.39) benign(0.007) TCGA-EB-A5UM-01 14 21966562 21966562 G A TOX4 3'UTR 0.34 TCGA-EB-A5UM-01 14 22975681 22975681 T G TRAJ35 Missense_Mutation p.L19V 0.34 unknown(0) TCGA-EB-A5UM-01 14 23816925 23816925 G A SLC22A17 Silent p.A320A 0.28 TCGA-EB-A5UM-01 14 23816926 23816926 G A SLC22A17 Missense_Mutation p.A320V 0.28 deleterious(0) possibly_damaging(0.671) TCGA-EB-A5UM-01 14 23848716 23848716 C T CMTM5 3'UTR 0.41 TCGA-EB-A5UM-01 14 24734913 24734913 G A RABGGTA Missense_Mutation p.L538F 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A5UM-01 14 24787976 24787976 G A ADCY4 Missense_Mutation p.H989Y 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-EB-A5UM-01 14 24795359 24795359 G A ADCY4 Silent p.P527P 0.30 TCGA-EB-A5UM-01 14 24839795 24839795 C T NFATC4 Silent p.I460I 0.20 TCGA-EB-A5UM-01 14 51382635 51382635 C T PYGL Missense_Mutation p.E383K 0.10 deleterious(0.01) possibly_damaging(0.56) TCGA-EB-A5UM-01 14 52486840 52486840 G A NID2 Missense_Mutation p.P911S 0.32 tolerated(0.05) probably_damaging(0.911) TCGA-EB-A5UM-01 14 53525209 53525209 G A DDHD1 Missense_Mutation p.P660S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 14 61912445 61912445 G A PRKCH Splice_Site p.X205_splice 0.36 TCGA-EB-A5UM-01 14 64699906 64699906 C T ESR2 Silent p.P514P 0.23 TCGA-EB-A5UM-01 14 68191250 68191250 G A RDH12 Silent p.V43V 0.25 TCGA-EB-A5UM-01 14 70989852 70989852 G A ADAM20 Silent p.F591F 0.46 TCGA-EB-A5UM-01 14 77703049 77703049 G A TMEM63C Missense_Mutation p.G209R 0.36 tolerated(0.42) benign(0.005) TCGA-EB-A5UM-01 14 91757385 91757385 C T CCDC88C Missense_Mutation p.E1386K 0.70 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 14 94756633 94756633 A T SERPINA10 Missense_Mutation p.F100I 0.10 tolerated(0.3) possibly_damaging(0.628) TCGA-EB-A5UM-01 14 95056479 95056479 C T SERPINA5 Nonsense_Mutation p.Q241* 0.34 TCGA-EB-A5UM-01 14 95109925 95109925 G A SERPINA13P RNA 0.67 TCGA-EB-A5UM-01 15 101109757 101109757 G A LINS Nonsense_Mutation p.Q654* 0.29 TCGA-EB-A5UM-01 15 22969243 22969243 C T CYFIP1 Silent p.A823A 0.25 TCGA-EB-A5UM-01 15 24921866 24921866 G A NPAP1 Silent p.E284E 0.39 TCGA-EB-A5UM-01 15 24924230 24924230 G A NPAP1 Silent p.G1072G 0.35 TCGA-EB-A5UM-01 15 31793921 31793921 C T OTUD7A Missense_Mutation p.M374I 0.37 deleterious(0) probably_damaging(0.943) TCGA-EB-A5UM-01 15 34015004 34015004 G A RYR3 Silent p.G2236G 0.26 TCGA-EB-A5UM-01 15 34015005 34015005 G A RYR3 Missense_Mutation p.G2237R 0.27 probably_damaging(1) TCGA-EB-A5UM-01 15 34102825 34102825 C T RYR3 Missense_Mutation p.S3391F 0.47 benign(0.033) TCGA-EB-A5UM-01 15 42058882 42058882 C T MGA Missense_Mutation p.P2868S 0.38 tolerated(0.57) benign(0.005) TCGA-EB-A5UM-01 15 42059266 42059266 G A MGA Missense_Mutation p.V2996I 0.36 deleterious(0.04) benign(0.234) TCGA-EB-A5UM-01 15 44198110 44198110 C T FRMD5 Missense_Mutation p.G156D 0.50 tolerated(0.36) probably_damaging(1) TCGA-EB-A5UM-01 15 50209151 50209151 C T ATP8B4 Silent p.V707V 0.30 TCGA-EB-A5UM-01 15 51291441 51291441 C T AP4E1 Missense_Mutation p.S1026L 0.53 tolerated(0.25) benign(0.026) TCGA-EB-A5UM-01 15 65214141 65214141 C T ANKDD1A Silent p.L97L 0.33 TCGA-EB-A5UM-01 15 65625748 65625748 G A IGDCC3 Missense_Mutation p.R277C 0.44 deleterious(0.03) possibly_damaging(0.709) TCGA-EB-A5UM-01 15 67665766 67665766 C T IQCH Missense_Mutation p.S456L 0.34 deleterious(0) probably_damaging(0.992) TCGA-EB-A5UM-01 15 71549017 71549017 C T THSD4 Silent p.F326F 0.30 TCGA-EB-A5UM-01 15 72190946 72190946 G A MYO9A Missense_Mutation p.P1300S 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-EB-A5UM-01 15 73866084 73866084 C T NPTN Silent p.Q253Q 0.41 TCGA-EB-A5UM-01 15 74468145 74468145 G A ISLR Missense_Mutation p.D316N 0.48 tolerated(0.53) benign(0.012) TCGA-EB-A5UM-01 15 76588000 76588000 T C ETFA Missense_Mutation p.T40A 0.10 tolerated(0.84) benign(0.002) TCGA-EB-A5UM-01 15 84442363 84442363 G A ADAMTSL3 Missense_Mutation p.G93E 0.29 deleterious(0) probably_damaging(0.975) TCGA-EB-A5UM-01 15 86284490 86284490 C T AKAP13 Missense_Mutation p.R2612C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 15 86286850 86286850 C T AKAP13 Missense_Mutation p.P2733L 0.34 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UM-01 15 89002879 89002879 G A MRPL46 Silent p.L269L 0.35 TCGA-EB-A5UM-01 15 89392670 89392670 G A ACAN Silent p.G578G 0.21 TCGA-EB-A5UM-01 15 90213254 90213254 C T PLIN1 Silent p.E185E 0.31 TCGA-EB-A5UM-01 15 91456116 91456116 C T MAN2A2 Missense_Mutation p.P827S 0.27 tolerated(0.46) possibly_damaging(0.904) TCGA-EB-A5UM-01 16 19058513 19058513 C T TMC7 Missense_Mutation p.S561L 0.35 tolerated(0.06) probably_damaging(0.943) TCGA-EB-A5UM-01 16 1996982 1996982 G A RPL3L Missense_Mutation p.A269V 0.33 deleterious(0.04) benign(0.359) TCGA-EB-A5UM-01 16 20999337 20999337 C T DNAH3 Missense_Mutation p.D2218N 0.33 tolerated(0.2) benign(0.009) TCGA-EB-A5UM-01 16 2164604 2164604 G A PKD1 Missense_Mutation p.S807F 0.57 benign(0.018) TCGA-EB-A5UM-01 16 2321824 2321824 C T RNPS1 5'Flank 0.37 TCGA-EB-A5UM-01 16 23646997 23646997 C T PALB2 Silent p.E290E 0.31 TCGA-EB-A5UM-01 16 24372725 24372725 C T CACNG3 Silent p.D163D 0.33 TCGA-EB-A5UM-01 16 27777647 27777647 A G KIAA0556 Missense_Mutation p.N1276S 0.32 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UM-01 16 28497800 28497800 G A CLN3 Missense_Mutation p.S182F 0.50 deleterious(0) possibly_damaging(0.882) TCGA-EB-A5UM-01 16 31088233 31088233 C T ZNF646 Silent p.A196A 0.09 TCGA-EB-A5UM-01 16 31308909 31308909 C T ITGAM Silent p.I477I 0.38 TCGA-EB-A5UM-01 16 31434740 31434740 G A ITGAD Missense_Mutation p.G976E 0.25 tolerated(0.47) benign(0.047) TCGA-EB-A5UM-01 16 3304407 3304407 G A MEFV Missense_Mutation p.P221S 0.29 tolerated(0.92) benign(0.012) TCGA-EB-A5UM-01 16 334953 334953 G A PDIA2 Missense_Mutation p.D206N 0.32 tolerated(0.21) benign(0.013) TCGA-EB-A5UM-01 16 50327351 50327351 C T ADCY7 Silent p.D258D 0.07 TCGA-EB-A5UM-01 16 50815202 50815202 C T CYLD Missense_Mutation p.R522W 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 16 5105333 5105333 C T C16orf89 Missense_Mutation p.G261D 0.28 deleterious(0.01) possibly_damaging(0.701) TCGA-EB-A5UM-01 16 55866947 55866947 G A CES1 Silent p.I7I 0.44 TCGA-EB-A5UM-01 16 68849478 68849478 C T CDH1 Missense_Mutation p.P461S 0.38 deleterious(0.03) benign(0.329) TCGA-EB-A5UM-01 16 70305756 70305756 G A AARS Missense_Mutation p.A200V 0.28 tolerated(0.09) benign(0.143) TCGA-EB-A5UM-01 16 70977848 70977848 G A HYDIN Missense_Mutation p.S2179F 0.19 benign(0.082) TCGA-EB-A5UM-01 16 71015453 71015453 G A HYDIN Nonsense_Mutation p.Q1451* 0.26 TCGA-EB-A5UM-01 16 81324154 81324154 C T BCMO1 Missense_Mutation p.S539F 0.11 deleterious_low_confidence(0.02) benign(0.259) TCGA-EB-A5UM-01 16 83636148 83636148 G A CDH13 Silent p.T397T 0.39 TCGA-EB-A5UM-01 16 84270436 84270436 G A KCNG4 Missense_Mutation p.P219L 0.22 deleterious(0.02) possibly_damaging(0.651) TCGA-EB-A5UM-01 16 88722829 88722829 G A MVD Intron 0.50 TCGA-EB-A5UM-01 16 8873373 8873373 G A ABAT Missense_Mutation p.R436Q 0.32 tolerated(0.33) benign(0.014) TCGA-EB-A5UM-01 16 9857878 9857878 C T GRIN2A Missense_Mutation p.E1175K 0.32 tolerated(0.52) benign(0.282) TCGA-EB-A5UM-01 17 11784563 11784563 C T DNAH9 Missense_Mutation p.P3547S 0.39 possibly_damaging(0.457) TCGA-EB-A5UM-01 17 1538496 1538496 C T SCARF1 Silent p.E683E 0.27 TCGA-EB-A5UM-01 17 1579804 1579804 G A PRPF8 Silent p.L795L 0.34 TCGA-EB-A5UM-01 17 15989660 15989660 G A NCOR1 Missense_Mutation p.P1038L 0.35 probably_damaging(0.999) TCGA-EB-A5UM-01 17 17723494 17723494 G A SREBF1 Silent p.L175L 0.38 TCGA-EB-A5UM-01 17 18024936 18024936 C T MYO15A Missense_Mutation p.S941F 0.43 unknown(0) TCGA-EB-A5UM-01 17 20108047 20108047 C A SPECC1 Missense_Mutation p.L229I 0.35 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UM-01 17 20354881 20354881 G A LGALS9B Silent p.V278V 0.44 TCGA-EB-A5UM-01 17 2202686 2202686 C T SMG6 Missense_Mutation p.R454Q 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A5UM-01 17 27580694 27580694 G A CRYBA1 Missense_Mutation p.E132K 0.26 tolerated(0.06) probably_damaging(0.933) TCGA-EB-A5UM-01 17 27816699 27816699 T A TAOK1 Missense_Mutation p.L225I 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-EB-A5UM-01 17 28890309 28890309 C T TBC1D29 Missense_Mutation p.P107S 0.41 tolerated(0.2) probably_damaging(0.986) TCGA-EB-A5UM-01 17 3181692 3181692 G A OR3A2 Missense_Mutation p.P180S 0.25 tolerated(0.26) benign(0.122) TCGA-EB-A5UM-01 17 33502996 33503016 GGCACTGTGTGACAACCCAAA - UNC45B In_Frame_Del p.A659_K665del 0.12 TCGA-EB-A5UM-01 17 33680822 33680822 G T SLFN11 Missense_Mutation p.D485E 0.44 tolerated(0.6) benign(0.025) TCGA-EB-A5UM-01 17 33769049 33769049 G T SLFN13 Missense_Mutation p.D485E 0.08 tolerated(0.54) benign(0.025) TCGA-EB-A5UM-01 17 34072116 34072116 G A GAS2L2 Silent p.A800A 0.45 TCGA-EB-A5UM-01 17 3493353 3493353 G A SHPK Silent p.I264I 0.33 TCGA-EB-A5UM-01 17 36935647 36935647 A G PIP4K2B Missense_Mutation p.Y215H 0.40 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UM-01 17 39521086 39521086 G A KRT33B Missense_Mutation p.R348W 0.40 tolerated(0.05) possibly_damaging(0.597) TCGA-EB-A5UM-01 17 42475504 42475504 G A GPATCH8 Missense_Mutation p.P1314L 0.34 deleterious(0.03) unknown(0) TCGA-EB-A5UM-01 17 4348419 4348419 C T SPNS3 Silent p.L120L 0.31 TCGA-EB-A5UM-01 17 4576243 4576243 G A PELP1 Silent p.G681G 0.33 TCGA-EB-A5UM-01 17 4578480 4578480 G A PELP1 Missense_Mutation p.R390W 0.38 probably_damaging(0.997) TCGA-EB-A5UM-01 17 48192969 48192969 G A SAMD14 Missense_Mutation p.P261S 0.36 deleterious(0.02) possibly_damaging(0.731) TCGA-EB-A5UM-01 17 48275130 48275130 C T COL1A1 Missense_Mutation p.R220Q 0.33 unknown(0) TCGA-EB-A5UM-01 17 48677162 48677162 C T CACNA1G Missense_Mutation p.A1211V 0.39 tolerated(0.53) benign(0.001) TCGA-EB-A5UM-01 17 55027863 55027863 G A COIL Missense_Mutation p.S247F 0.31 deleterious(0.01) possibly_damaging(0.854) TCGA-EB-A5UM-01 17 65882413 65882413 C A BPTF Intron 0.15 TCGA-EB-A5UM-01 17 65909225 65909225 A T BPTF Missense_Mutation p.Y1742F 0.10 possibly_damaging(0.885) TCGA-EB-A5UM-01 17 65909227 65909227 T C BPTF Missense_Mutation p.F1743L 0.10 probably_damaging(0.995) TCGA-EB-A5UM-01 17 67178853 67178853 G A ABCA10 Missense_Mutation p.S865F 0.36 deleterious(0.01) benign(0.25) TCGA-EB-A5UM-01 17 7220821 7220821 G A NEURL4 Missense_Mutation p.A1426V 0.40 deleterious(0.02) benign(0.004) TCGA-EB-A5UM-01 17 76424696 76424696 G T DNAH17 Silent p.V4160V 0.29 TCGA-EB-A5UM-01 17 76458958 76458958 C T DNAH17 Missense_Mutation p.G3034S 0.26 probably_damaging(0.982) TCGA-EB-A5UM-01 17 78219056 78219056 G A SLC26A11 Splice_Site p.X366_splice 0.32 TCGA-EB-A5UM-01 17 7950363 7950363 G A ALOX15B Missense_Mutation p.D476N 0.23 deleterious(0) possibly_damaging(0.836) TCGA-EB-A5UM-01 17 80280143 80280143 G A SECTM1 Missense_Mutation p.S214F 0.25 deleterious_low_confidence(0.01) benign(0.07) TCGA-EB-A5UM-01 17 8449901 8449901 G A MYH10 Silent p.V413V 0.31 TCGA-EB-A5UM-01 17 8732089 8732089 C T PIK3R6 Missense_Mutation p.G370R 0.28 deleterious(0.04) probably_damaging(1) TCGA-EB-A5UM-01 18 10672748 10672748 C T PIEZO2 Missense_Mutation p.E2649K 0.49 tolerated(0.05) possibly_damaging(0.466) TCGA-EB-A5UM-01 18 21402259 21402259 C T LAMA3 Missense_Mutation p.S783F 0.16 benign(0.193) TCGA-EB-A5UM-01 18 21456268 21456268 C T LAMA3 Missense_Mutation p.P1670L 0.36 benign(0.17) TCGA-EB-A5UM-01 18 30517989 30517989 C T CCDC178 Missense_Mutation p.E864K 0.47 tolerated(0.18) benign(0.109) TCGA-EB-A5UM-01 18 3141943 3141943 C T MYOM1 Silent p.V673V 0.21 TCGA-EB-A5UM-01 18 31523130 31523130 G A NOL4 Missense_Mutation p.P481S 0.37 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UM-01 18 3597055 3597055 T A DLGAP1 Intron 0.16 TCGA-EB-A5UM-01 18 42531217 42531217 G A SETBP1 Missense_Mutation p.G638R 0.29 tolerated(0.19) possibly_damaging(0.894) TCGA-EB-A5UM-01 18 44589437 44589437 C T KATNAL2 Missense_Mutation p.P143L 0.24 tolerated(0.08) benign(0.365) TCGA-EB-A5UM-01 18 47812544 47812544 G A CXXC1 Missense_Mutation p.R103W 0.36 deleterious(0) probably_damaging(0.928) TCGA-EB-A5UM-01 18 48190310 48190310 C T MAPK4 5'UTR 0.37 TCGA-EB-A5UM-01 18 56587329 56587329 C T ZNF532 Missense_Mutation p.P604S 0.34 deleterious(0) probably_damaging(0.94) TCGA-EB-A5UM-01 18 7231409 7231409 G A LRRC30 Silent p.G91G 0.28 TCGA-EB-A5UM-01 18 72999558 72999558 C T TSHZ1 Silent p.I687I 0.31 TCGA-EB-A5UM-01 18 77475254 77475254 C T CTDP1 Silent p.V598V 0.27 TCGA-EB-A5UM-01 19 1014471 1014471 G A TMEM259 Missense_Mutation p.A76V 0.36 deleterious(0.04) probably_damaging(1) TCGA-EB-A5UM-01 19 1085685 1085685 G A HMHA1 Missense_Mutation p.D1047N 0.20 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-EB-A5UM-01 19 11446427 11446427 G A RAB3D Silent p.I87I 0.33 TCGA-EB-A5UM-01 19 13033454 13033454 G A FARSA 3'UTR 0.35 TCGA-EB-A5UM-01 19 13221031 13221031 G A TRMT1 Silent p.F320F 0.37 TCGA-EB-A5UM-01 19 15296072 15296072 G A NOTCH3 Silent p.V764V 0.36 TCGA-EB-A5UM-01 19 16942392 16942392 C T SIN3B Silent p.P105P 0.35 TCGA-EB-A5UM-01 19 17533138 17533138 C T MVB12A Intron 0.38 TCGA-EB-A5UM-01 19 20728144 20728144 C T ZNF737 Missense_Mutation p.E289K 0.22 tolerated(0.05) benign(0.034) TCGA-EB-A5UM-01 19 21300841 21300841 T G ZNF714 Missense_Mutation p.C457W 0.26 deleterious(0) possibly_damaging(0.818) TCGA-EB-A5UM-01 19 33089019 33089019 C T ANKRD27 3'UTR 0.28 TCGA-EB-A5UM-01 19 33698385 33698385 C T LRP3 Silent p.P739P 0.29 TCGA-EB-A5UM-01 19 3823269 3823269 G A ZFR2 Missense_Mutation p.P449L 0.20 deleterious(0.03) possibly_damaging(0.74) TCGA-EB-A5UM-01 19 3823270 3823270 G A ZFR2 Missense_Mutation p.P449S 0.21 deleterious(0) probably_damaging(0.988) TCGA-EB-A5UM-01 19 39308216 39308216 C T AC104534.3 Splice_Site p.X287_splice 0.42 TCGA-EB-A5UM-01 19 40406061 40406061 C T FCGBP Splice_Site p.X1596_splice 0.33 TCGA-EB-A5UM-01 19 40412019 40412019 G A FCGBP Silent p.T1203T 0.40 TCGA-EB-A5UM-01 19 41351977 41351977 A T CYP2A6 Missense_Mutation p.F286Y 0.24 probably_damaging(1) TCGA-EB-A5UM-01 19 42492256 42492256 G A ATP1A3 Silent p.A76A 0.32 TCGA-EB-A5UM-01 19 42599998 42599998 C T POU2F2 Silent p.L249L 0.34 TCGA-EB-A5UM-01 19 42931036 42931036 G A LIPE Missense_Mutation p.A89V 0.32 deleterious_low_confidence(0.01) benign(0.021) TCGA-EB-A5UM-01 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.34 tolerated(0.29) possibly_damaging(0.621) TCGA-EB-A5UM-01 19 44981505 44981505 G A ZNF180 Missense_Mutation p.S398F 0.33 deleterious(0.04) probably_damaging(0.975) TCGA-EB-A5UM-01 19 45021080 45021080 C T CEACAM20 RNA 0.33 TCGA-EB-A5UM-01 19 45448481 45448481 C T APOC4 Silent p.F101F 0.36 TCGA-EB-A5UM-01 19 46289540 46289540 G A DMWD Missense_Mutation p.P405L 0.38 tolerated(0.25) benign(0.033) TCGA-EB-A5UM-01 19 46825046 46825046 C T HIF3A Silent p.P386P 0.40 TCGA-EB-A5UM-01 19 49004380 49004380 C T LMTK3 Missense_Mutation p.E371K 0.33 probably_damaging(0.999) TCGA-EB-A5UM-01 19 49377267 49377267 C T PPP1R15A Silent p.S259S 0.39 TCGA-EB-A5UM-01 19 49640091 49640091 C T PPFIA3 Silent p.S592S 0.50 TCGA-EB-A5UM-01 19 51890437 51890437 C T LIM2 Nonsense_Mutation p.W87* 0.20 TCGA-EB-A5UM-01 19 51918540 51918540 C T SIGLEC10 Missense_Mutation p.V409I 0.23 tolerated(0.23) benign(0.181) TCGA-EB-A5UM-01 19 51958926 51958926 C T SIGLEC8 Missense_Mutation p.G266E 0.19 tolerated(0.74) benign(0.079) TCGA-EB-A5UM-01 19 52869958 52869958 C T ZNF610 Missense_Mutation p.L443F 0.32 deleterious(0.02) probably_damaging(0.975) TCGA-EB-A5UM-01 19 53611914 53611914 G A ZNF415 Missense_Mutation p.H462Y 0.29 deleterious(0.01) possibly_damaging(0.708) TCGA-EB-A5UM-01 19 54080199 54080199 A T ZNF331 Missense_Mutation p.N129Y 0.24 deleterious(0) benign(0.259) TCGA-EB-A5UM-01 19 54135382 54135382 C T DPRX Missense_Mutation p.R8C 0.40 tolerated(0.07) benign(0.197) TCGA-EB-A5UM-01 19 54313481 54313481 C T NLRP12 Missense_Mutation p.E478K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UM-01 19 54314350 54314350 C T NLRP12 Missense_Mutation p.G188E 0.34 tolerated(0.6) benign(0.045) TCGA-EB-A5UM-01 19 54544181 54544181 C T VSTM1 3'UTR 0.19 TCGA-EB-A5UM-01 19 55144091 55144091 G A LILRB1 Missense_Mutation p.A280T 0.36 deleterious(0.02) benign(0.08) TCGA-EB-A5UM-01 19 55175434 55175434 G A LILRB4 Missense_Mutation p.C98Y 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 19 55341806 55341806 T C KIR3DL1 3'UTR 0.33 TCGA-EB-A5UM-01 19 55451188 55451188 G A NLRP7 Silent p.F333F 0.30 TCGA-EB-A5UM-01 19 56544059 56544059 G A NLRP5 Missense_Mutation p.D787N 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-EB-A5UM-01 19 56953625 56953625 G A ZNF667 Missense_Mutation p.H247Y 0.28 tolerated(0.05) benign(0.069) TCGA-EB-A5UM-01 19 57326279 57326279 G A PEG3 Silent p.F1177F 0.32 TCGA-EB-A5UM-01 19 5784243 5784243 G A CTB-54O9.9 3'UTR 0.33 TCGA-EB-A5UM-01 19 5789499 5789499 G A DUS3L Missense_Mutation p.R207C 0.20 tolerated(0.13) benign(0.004) TCGA-EB-A5UM-01 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.11 deleterious(0) possibly_damaging(0.891) TCGA-EB-A5UM-01 19 6665077 6665077 G C TNFSF14 Missense_Mutation p.R195G 0.35 deleterious(0.01) benign(0.075) TCGA-EB-A5UM-01 19 8137961 8137961 G A FBN3 Silent p.F2641F 0.38 TCGA-EB-A5UM-01 19 8176593 8176593 G A FBN3 Silent p.V1341V 0.28 TCGA-EB-A5UM-01 19 9024197 9024197 G A MUC16 Missense_Mutation p.P12359S 0.24 benign(0.095) TCGA-EB-A5UM-01 19 9047620 9047620 C A MUC16 Silent p.V11337V 0.10 TCGA-EB-A5UM-01 19 9059063 9059063 G A MUC16 Silent p.V9461V 0.37 TCGA-EB-A5UM-01 19 9062027 9062027 G A MUC16 Silent p.I8473I 0.33 TCGA-EB-A5UM-01 19 9088326 9088326 G T MUC16 Silent p.P1163P 0.29 TCGA-EB-A5UM-01 19 9577844 9577844 T A ZNF560 Missense_Mutation p.R593S 0.31 tolerated(0.23) benign(0.015) TCGA-EB-A5UM-01 1 100964712 100964712 C T CDC14A Missense_Mutation p.P550L 0.56 tolerated_low_confidence(0.6) benign(0.001) TCGA-EB-A5UM-01 1 109477459 109477459 C T CLCC1 Missense_Mutation p.V497I 0.64 tolerated(0.22) benign(0.01) TCGA-EB-A5UM-01 1 109867706 109867706 G T SORT1 Missense_Mutation p.S550Y 0.56 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 1 11015073 11015073 G A C1orf127 Missense_Mutation p.P317S 0.51 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A5UM-01 1 111991257 111991257 T A WDR77 Silent p.L95L 0.55 TCGA-EB-A5UM-01 1 118628677 118628677 G A SPAG17 Missense_Mutation p.P544S 0.53 deleterious(0) probably_damaging(0.923) TCGA-EB-A5UM-01 1 120050039 120050039 C T HSD3B1 5'UTR 0.43 TCGA-EB-A5UM-01 1 148343694 148343694 G A NBPF20 Silent p.L131L 0.24 TCGA-EB-A5UM-01 1 149902735 149902735 G A MTMR11 Silent p.T471T 0.34 TCGA-EB-A5UM-01 1 152057868 152057868 G A TCHHL1 Missense_Mutation p.P764S 0.35 tolerated(0.32) benign(0.023) TCGA-EB-A5UM-01 1 152129112 152129112 C T RPTN Missense_Mutation p.D155N 0.33 tolerated(0.08) benign(0.285) TCGA-EB-A5UM-01 1 152484240 152484240 C T LCE5A Missense_Mutation p.S77F 0.25 tolerated_low_confidence(0.19) unknown(0) TCGA-EB-A5UM-01 1 152595494 152595494 G A LCE3A Missense_Mutation p.S29F 0.43 deleterious_low_confidence(0) unknown(0) TCGA-EB-A5UM-01 1 154841787 154841787 C T KCNN3 Silent p.E218E 0.27 TCGA-EB-A5UM-01 1 159683618 159683618 G A CRP Silent p.I124I 0.34 TCGA-EB-A5UM-01 1 160811413 160811413 C T CD244 Missense_Mutation p.G114R 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 1 16378885 16378885 G A CLCNKB Missense_Mutation p.R534Q 0.41 tolerated(0.24) benign(0.095) TCGA-EB-A5UM-01 1 16809841 16809841 G A CROCCP3 RNA 0.56 TCGA-EB-A5UM-01 1 176671860 176671860 G A PAPPA2 Silent p.G1118G 0.33 TCGA-EB-A5UM-01 1 176934317 176934317 G A ASTN1 Missense_Mutation p.P527L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A5UM-01 1 177001830 177001830 G A ASTN1 Silent p.I209I 0.54 TCGA-EB-A5UM-01 1 177001844 177001844 G A ASTN1 Missense_Mutation p.P205S 0.25 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-EB-A5UM-01 1 179620128 179620128 G A TDRD5 Missense_Mutation p.E643K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 1 183189970 183189970 G A LAMC2 Missense_Mutation p.G172S 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-EB-A5UM-01 1 186282759 186282759 T A TPR 3'UTR 0.28 TCGA-EB-A5UM-01 1 197008438 197008438 C T F13B 3'UTR 0.24 TCGA-EB-A5UM-01 1 197065158 197065158 C - ASPM Frame_Shift_Del p.G2986Vfs*7 0.09 TCGA-EB-A5UM-01 1 200968576 200968576 C T KIF21B Missense_Mutation p.E596K 0.18 tolerated(0.16) probably_damaging(0.955) TCGA-EB-A5UM-01 1 203708958 203708958 A G ATP2B4 Silent p.L1198L 0.14 TCGA-EB-A5UM-01 1 207737267 207737267 C A CR1 Missense_Mutation p.N1215K 0.34 tolerated(0.96) possibly_damaging(0.695) TCGA-EB-A5UM-01 1 212002577 212002577 C T LPGAT1 Missense_Mutation p.R21K 0.33 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UM-01 1 216074149 216074149 G A USH2A Missense_Mutation p.P2467S 0.27 possibly_damaging(0.741) TCGA-EB-A5UM-01 1 217793706 217793706 C T GPATCH2 Silent p.Q64Q 0.36 TCGA-EB-A5UM-01 1 223284515 223284515 G A TLR5 Missense_Mutation p.S620F 0.26 deleterious(0) probably_damaging(0.955) TCGA-EB-A5UM-01 1 233497904 233497904 G A MLK4 Missense_Mutation p.D473N 0.31 tolerated(0.07) benign(0.337) TCGA-EB-A5UM-01 1 235922707 235922707 G C LYST Missense_Mutation p.S2149C 0.33 tolerated_low_confidence(0.19) benign(0.149) TCGA-EB-A5UM-01 1 248616908 248616908 G A OR2T2 Silent p.E270E 0.27 TCGA-EB-A5UM-01 1 248685473 248685473 C T OR2G6 Missense_Mutation p.H176Y 0.45 deleterious(0) probably_damaging(0.981) TCGA-EB-A5UM-01 1 36937959 36937959 C T CSF3R Missense_Mutation p.E293K 0.60 tolerated(0.23) benign(0.11) TCGA-EB-A5UM-01 1 38185697 38185697 C T EPHA10 Missense_Mutation p.E816K 0.49 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 1 45296551 45296551 G T PTCH2 Missense_Mutation p.P261Q 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 1 47614387 47614387 G A CYP4A22 Missense_Mutation p.R493Q 0.66 tolerated(1) benign(0.086) TCGA-EB-A5UM-01 1 50885069 50885069 G A DMRTA2 Silent p.A299A 0.52 TCGA-EB-A5UM-01 1 62734131 62734131 G A KANK4 Missense_Mutation p.P687S 0.63 tolerated(1) possibly_damaging(0.857) TCGA-EB-A5UM-01 1 6512044 6512044 C T ESPN Missense_Mutation p.A738V 0.56 deleterious(0.03) benign(0.371) TCGA-EB-A5UM-01 1 74492586 74492586 C T LRRIQ3 Missense_Mutation p.A596T 0.27 tolerated(0.3) benign(0.091) TCGA-EB-A5UM-01 1 8390616 8390616 G A SLC45A1 Missense_Mutation p.D355N 0.52 tolerated(0.1) probably_damaging(0.923) TCGA-EB-A5UM-01 20 13866978 13866978 G A SEL1L2 Nonsense_Mutation p.Q286* 0.31 TCGA-EB-A5UM-01 20 2375099 2375099 G A TGM6 Silent p.G3G 0.25 TCGA-EB-A5UM-01 20 2384227 2384227 G A TGM6 Missense_Mutation p.G365D 0.31 deleterious(0) probably_damaging(0.931) TCGA-EB-A5UM-01 20 25319919 25319919 G A ABHD12 Missense_Mutation p.P87L 0.56 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 20 30738490 30738490 C T TM9SF4 Missense_Mutation p.L385F 0.04 deleterious(0.03) possibly_damaging(0.464) TCGA-EB-A5UM-01 20 33632470 33632470 A T TRPC4AP Missense_Mutation p.S235T 0.11 tolerated(0.57) benign(0.142) TCGA-EB-A5UM-01 20 35742482 35742482 G A MROH8 Missense_Mutation p.P895S 0.28 tolerated(0.32) benign(0.009) TCGA-EB-A5UM-01 20 36012616 36012616 C T SRC Silent p.P20P 0.36 TCGA-EB-A5UM-01 20 40757460 40757460 G A PTPRT Silent p.S927S 0.21 TCGA-EB-A5UM-01 20 40979308 40979308 C A PTPRT Missense_Mutation p.V609L 0.13 deleterious(0) benign(0.022) TCGA-EB-A5UM-01 20 47990747 47990747 C T KCNB1 Missense_Mutation p.M450I 0.15 tolerated(0.23) benign(0.002) TCGA-EB-A5UM-01 20 52192508 52192508 G A ZNF217 Missense_Mutation p.P932L 0.20 deleterious(0.03) benign(0.367) TCGA-EB-A5UM-01 20 57290282 57290282 C T NPEPL1 Missense_Mutation p.S491F 0.36 tolerated(0.07) benign(0.043) TCGA-EB-A5UM-01 20 57430004 57430004 C T GNAS Missense_Mutation p.R562C 0.26 tolerated_low_confidence(0.21) benign(0) TCGA-EB-A5UM-01 20 5903508 5903508 G A CHGB Missense_Mutation p.G240R 0.38 tolerated(0.66) benign(0.186) TCGA-EB-A5UM-01 20 60909244 60909244 G A LAMA5 Nonsense_Mutation p.Q913* 0.29 TCGA-EB-A5UM-01 20 60909245 60909245 G A LAMA5 Silent p.V912V 0.29 TCGA-EB-A5UM-01 20 61951495 61951495 C T COL20A1 Silent p.F1007F 0.64 TCGA-EB-A5UM-01 20 62593692 62593692 G A ZNF512B Silent p.N733N 0.12 TCGA-EB-A5UM-01 20 9561572 9561572 G A PAK7 Silent p.I70I 0.46 TCGA-EB-A5UM-01 21 22881354 22881354 G A NCAM2 Missense_Mutation p.E754K 0.25 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UM-01 21 30961298 30961298 C T GRIK1 Missense_Mutation p.G477E 0.08 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 21 31654961 31654961 G A KRTAP24-1 Missense_Mutation p.S97F 0.40 deleterious(0.02) benign(0.297) TCGA-EB-A5UM-01 21 31768817 31768817 C T KRTAP13-1 Missense_Mutation p.P138L 0.42 deleterious(0) probably_damaging(0.987) TCGA-EB-A5UM-01 21 32119366 32119366 C T KRTAP21-2 Missense_Mutation p.G52E 0.39 deleterious_low_confidence(0) unknown(0) TCGA-EB-A5UM-01 21 33785321 33785321 G T EVA1C Missense_Mutation p.G54C 0.33 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UM-01 21 33949112 33949112 G A TCP10L Missense_Mutation p.P207L 0.32 deleterious(0) possibly_damaging(0.787) TCGA-EB-A5UM-01 21 34927067 34927067 C T SON Missense_Mutation p.R1844C 0.32 unknown(0) TCGA-EB-A5UM-01 21 42843805 42843805 G A TMPRSS2 Missense_Mutation p.P372S 0.22 tolerated(0.14) possibly_damaging(0.775) TCGA-EB-A5UM-01 21 43241446 43241446 G A PRDM15 Silent p.N1045N 0.23 TCGA-EB-A5UM-01 21 44592193 44592193 T A CRYAA Missense_Mutation p.Y109N 0.29 deleterious(0) possibly_damaging(0.89) TCGA-EB-A5UM-01 21 46047074 46047074 C T KRTAP10-9 5'UTR 0.37 TCGA-EB-A5UM-01 21 46074412 46074412 G A KRTAP12-4 Silent p.P40P 0.19 TCGA-EB-A5UM-01 21 46875713 46875713 G A COL18A1 Missense_Mutation p.G90D 0.21 unknown(0) TCGA-EB-A5UM-01 22 16256542 16256542 C T POTEH 3'UTR 0.20 TCGA-EB-A5UM-01 22 19747196 19747196 G A TBX1 Missense_Mutation p.M10I 0.28 tolerated_low_confidence(0.12) unknown(0) TCGA-EB-A5UM-01 22 23438119 23438119 C T GNAZ Silent p.D79D 0.13 TCGA-EB-A5UM-01 22 24829621 24829621 C T ADORA2A Silent p.F83F 0.22 TCGA-EB-A5UM-01 22 24906739 24906739 G A UPB1 Silent p.T129T 0.20 TCGA-EB-A5UM-01 22 26164456 26164456 G A MYO18B Silent p.K191K 0.27 TCGA-EB-A5UM-01 22 26690285 26690285 C T SEZ6L Missense_Mutation p.P288L 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 22 26860145 26860145 G A HPS4 Missense_Mutation p.P484L 0.24 tolerated(0.24) benign(0.007) TCGA-EB-A5UM-01 22 32480537 32480537 G A SLC5A1 Missense_Mutation p.R259K 0.13 tolerated(0.06) benign(0.02) TCGA-EB-A5UM-01 22 32480540 32480540 C A SLC5A1 Missense_Mutation p.A260D 0.13 tolerated(0.24) benign(0.012) TCGA-EB-A5UM-01 22 32480541 32480541 C T SLC5A1 Silent p.A260A 0.14 TCGA-EB-A5UM-01 22 32550266 32550266 C T C22orf42 Nonsense_Mutation p.W91* 0.33 TCGA-EB-A5UM-01 22 36650971 36650971 T A APOL1 Intron 0.06 TCGA-EB-A5UM-01 22 38040904 38040904 C T SH3BP1 Missense_Mutation p.R239C 0.61 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 22 39440985 39440985 C T APOBEC3F Missense_Mutation p.L71F 0.56 tolerated(0.05) benign(0.073) TCGA-EB-A5UM-01 22 39770350 39770350 C T SYNGR1 Silent p.I43I 0.13 TCGA-EB-A5UM-01 22 50942041 50942041 C G LMF2 Missense_Mutation p.A635P 0.31 tolerated(0.48) benign(0.014) TCGA-EB-A5UM-01 2 102504367 102504367 T C MAP4K4 Missense_Mutation p.V1155A 0.37 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-EB-A5UM-01 2 105858877 105858877 G A GPR45 Missense_Mutation p.E188K 0.47 tolerated(0.47) benign(0.044) TCGA-EB-A5UM-01 2 108487204 108487204 C T RGPD4 Missense_Mutation p.S915F 0.26 deleterious(0) probably_damaging(0.921) TCGA-EB-A5UM-01 2 109088034 109088034 T C GCC2 Missense_Mutation p.V750A 0.37 tolerated(0.86) benign(0.001) TCGA-EB-A5UM-01 2 10924542 10924542 G A ATP6V1C2 3'Flank 0.50 TCGA-EB-A5UM-01 2 113331210 113331210 C T POLR1B Silent p.L781L 0.40 TCGA-EB-A5UM-01 2 11716655 11716655 G A GREB1 Missense_Mutation p.G211S 0.33 tolerated(0.08) benign(0.105) TCGA-EB-A5UM-01 2 11761070 11761070 C T GREB1 Silent p.L1362L 0.28 TCGA-EB-A5UM-01 2 120221824 120221824 G A SCTR Missense_Mutation p.H171Y 0.36 deleterious(0) probably_damaging(0.91) TCGA-EB-A5UM-01 2 120439309 120439309 C T TMEM177 Missense_Mutation p.R294C 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 2 128184767 128184767 G A PROC Missense_Mutation p.M255I 0.31 tolerated(0.06) benign(0.023) TCGA-EB-A5UM-01 2 128247517 128247517 C A IWS1 Nonsense_Mutation p.E684* 0.36 TCGA-EB-A5UM-01 2 128392192 128392192 G A MYO7B Missense_Mutation p.D1857N 0.25 tolerated(0.06) possibly_damaging(0.735) TCGA-EB-A5UM-01 2 128522429 128522429 G A WDR33 Missense_Mutation p.A200V 0.35 deleterious(0.01) unknown(0) TCGA-EB-A5UM-01 2 132021806 132021806 G A POTEE Silent p.E926E 0.07 TCGA-EB-A5UM-01 2 133174954 133174954 C T GPR39 Silent p.F113F 0.35 TCGA-EB-A5UM-01 2 135743692 135743692 G A MAP3K19 Missense_Mutation p.S917F 0.47 tolerated(0.11) benign(0.059) TCGA-EB-A5UM-01 2 137872796 137872796 G A THSD7B Silent p.G434G 0.42 TCGA-EB-A5UM-01 2 143715241 143715241 G A KYNU Missense_Mutation p.G180E 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 2 149247552 149247552 C T MBD5 Missense_Mutation p.H1218Y 0.31 tolerated_low_confidence(0.28) unknown(0) TCGA-EB-A5UM-01 2 152303088 152303088 C T RIF1 Missense_Mutation p.S748F 0.26 tolerated(0.06) benign(0.211) TCGA-EB-A5UM-01 2 152322315 152322315 C T RIF1 Missense_Mutation p.S2094F 0.40 tolerated_low_confidence(0.1) benign(0.004) TCGA-EB-A5UM-01 2 152432779 152432779 C T NEB Silent p.Q5598Q 0.33 TCGA-EB-A5UM-01 2 160035579 160035579 G A TANC1 Silent p.R805R 0.10 TCGA-EB-A5UM-01 2 160843735 160843735 C T PLA2R1 Missense_Mutation p.E657K 0.32 tolerated(0.52) benign(0.003) TCGA-EB-A5UM-01 2 163361167 163361167 C T KCNH7 Missense_Mutation p.G305E 0.39 deleterious(0) benign(0.178) TCGA-EB-A5UM-01 2 1638092 1638092 C T PXDN Missense_Mutation p.G1442R 0.40 deleterious(0) probably_damaging(0.989) TCGA-EB-A5UM-01 2 168104167 168104167 G T XIRP2 Missense_Mutation p.V2089F 0.44 possibly_damaging(0.6) TCGA-EB-A5UM-01 2 179483200 179483200 C T TTN Missense_Mutation p.R15662H 0.29 TCGA-EB-A5UM-01 2 179598213 179598213 C T TTN Silent p.L5269L 0.24 TCGA-EB-A5UM-01 2 179615969 179615969 G A TTN Intron 0.33 TCGA-EB-A5UM-01 2 196720612 196720612 C T DNAH7 Missense_Mutation p.E2840K 0.27 tolerated(0.15) benign(0.047) TCGA-EB-A5UM-01 2 196729107 196729107 G A DNAH7 Silent p.L2424L 0.31 TCGA-EB-A5UM-01 2 196825468 196825468 A G DNAH7 Missense_Mutation p.Y803H 0.31 tolerated(0.15) benign(0.076) TCGA-EB-A5UM-01 2 197172730 197172730 C T HECW2 Silent p.P838P 0.48 TCGA-EB-A5UM-01 2 202633601 202633601 G A ALS2 Missense_Mutation p.S3L 0.30 deleterious_low_confidence(0.04) benign(0.001) TCGA-EB-A5UM-01 2 20402469 20402469 G A SDC1 3'UTR 0.29 TCGA-EB-A5UM-01 2 204082087 204082087 C T NBEAL1 3'UTR 0.30 TCGA-EB-A5UM-01 2 207527733 207527733 C T DYTN Silent p.K509K 0.28 TCGA-EB-A5UM-01 2 21231517 21231517 G A APOB Silent p.F2741F 0.33 TCGA-EB-A5UM-01 2 21233283 21233283 C T APOB Missense_Mutation p.E2153K 0.56 benign(0.156) TCGA-EB-A5UM-01 2 212543850 212543850 G C ERBB4 Missense_Mutation p.P517A 0.23 deleterious(0.03) benign(0.016) TCGA-EB-A5UM-01 2 218925164 218925164 C T CXCR2P1 RNA 0.35 TCGA-EB-A5UM-01 2 219610920 219610920 C G TTLL4 Missense_Mutation p.S647C 0.31 deleterious(0.03) possibly_damaging(0.632) TCGA-EB-A5UM-01 2 220159702 220159702 G A PTPRN Silent p.F890F 0.23 TCGA-EB-A5UM-01 2 220285619 220285619 G A DES Missense_Mutation p.E323K 0.25 deleterious(0) possibly_damaging(0.85) TCGA-EB-A5UM-01 2 231077626 231077626 G A SP110 Missense_Mutation p.P145S 0.37 tolerated(0.1) possibly_damaging(0.803) TCGA-EB-A5UM-01 2 232790347 232790347 G A NPPC Missense_Mutation p.P57S 0.58 tolerated(0.39) possibly_damaging(0.641) TCGA-EB-A5UM-01 2 234343481 234343481 C T DGKD Missense_Mutation p.P174S 0.43 deleterious(0.04) probably_damaging(0.969) TCGA-EB-A5UM-01 2 234359631 234359631 C T DGKD Missense_Mutation p.S701F 0.39 deleterious(0.02) benign(0.02) TCGA-EB-A5UM-01 2 234581226 234581226 G A UGT1A9 Missense_Mutation p.E216K 0.37 deleterious(0.04) benign(0.192) TCGA-EB-A5UM-01 2 234627932 234627932 C T UGT1A4 Missense_Mutation p.L156F 0.32 deleterious(0) possibly_damaging(0.74) TCGA-EB-A5UM-01 2 241631724 241631724 C T AQP12A Silent p.L119L 0.15 TCGA-EB-A5UM-01 2 242793446 242793446 C T PDCD1 Missense_Mutation p.E211K 0.31 deleterious(0.04) benign(0.388) TCGA-EB-A5UM-01 2 26532936 26532936 T G GPR113 Missense_Mutation p.Q1039P 0.28 tolerated(0.13) benign(0.004) TCGA-EB-A5UM-01 2 27457424 27457424 C T CAD Silent p.V1219V 0.31 TCGA-EB-A5UM-01 2 27799810 27799810 G A C2orf16 Missense_Mutation p.R124K 0.34 tolerated(0.22) benign(0.001) TCGA-EB-A5UM-01 2 37041353 37041353 C T VIT Missense_Mutation p.A644V 0.32 deleterious(0.02) possibly_damaging(0.477) TCGA-EB-A5UM-01 2 48915275 48915275 C T LHCGR Missense_Mutation p.R554Q 0.26 tolerated(0.37) benign(0.023) TCGA-EB-A5UM-01 2 56611435 56611435 C T CCDC85A Missense_Mutation p.S536L 0.41 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-EB-A5UM-01 2 64321759 64321759 G A PELI1 3'UTR 0.40 TCGA-EB-A5UM-01 2 67630398 67630398 C T ETAA1 Missense_Mutation p.A195V 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 2 70918050 70918050 C T ADD2 Missense_Mutation p.M239I 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A5UM-01 2 74906936 74906936 T G SEMA4F Missense_Mutation p.V638G 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-EB-A5UM-01 2 90108975 90108975 G A IGKV6D-41 Silent p.S80S 0.36 TCGA-EB-A5UM-01 2 98274416 98274416 C T ACTR1B Silent p.T305T 0.35 TCGA-EB-A5UM-01 2 99907697 99907697 T A LYG1 Intron 0.40 TCGA-EB-A5UM-01 3 100071283 100071283 C T NIT2 Missense_Mutation p.S207F 0.27 deleterious(0) probably_damaging(0.944) TCGA-EB-A5UM-01 3 108219114 108219114 G A MYH15 Missense_Mutation p.S136L 0.35 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UM-01 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A5UM-01 3 114014634 114014634 G A TIGIT Missense_Mutation p.D102N 0.31 deleterious(0.03) probably_damaging(1) TCGA-EB-A5UM-01 3 118942929 118942929 A G B4GALT4 Missense_Mutation p.V217A 0.32 tolerated(0.07) probably_damaging(0.976) TCGA-EB-A5UM-01 3 121973120 121973120 G A CASR Silent p.K28K 0.39 TCGA-EB-A5UM-01 3 125726068 125726068 C T SLC41A3 Missense_Mutation p.V419M 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 3 126135159 126135159 G A CCDC37 Missense_Mutation p.E76K 0.23 deleterious(0) possibly_damaging(0.798) TCGA-EB-A5UM-01 3 126261355 126261355 C T CHST13 Silent p.F320F 0.24 TCGA-EB-A5UM-01 3 127983613 127983613 C T EEFSEC Missense_Mutation p.P259S 0.43 deleterious(0.04) probably_damaging(0.941) TCGA-EB-A5UM-01 3 128182165 128182165 G A DNAJB8 5'UTR 0.43 TCGA-EB-A5UM-01 3 128199886 128199886 G A GATA2 Silent p.S473S 0.17 TCGA-EB-A5UM-01 3 129123215 129123215 G A EFCAB12 Silent p.F427F 0.46 TCGA-EB-A5UM-01 3 130427306 130427306 G A PIK3R4 Silent p.L788L 0.33 TCGA-EB-A5UM-01 3 135809486 135809486 A G PPP2R3A Silent p.E968E 0.40 TCGA-EB-A5UM-01 3 142561867 142561867 G A PCOLCE2 Missense_Mutation p.L158F 0.21 deleterious(0) probably_damaging(0.993) TCGA-EB-A5UM-01 3 14745865 14745865 G A C3orf20 Nonsense_Mutation p.W300* 0.32 TCGA-EB-A5UM-01 3 150127545 150127545 C T TSC22D2 Silent p.G136G 0.34 TCGA-EB-A5UM-01 3 150263527 150263527 C T SERP1 Nonsense_Mutation p.W41* 0.33 TCGA-EB-A5UM-01 3 150263528 150263528 C T SERP1 Nonsense_Mutation p.W41* 0.33 TCGA-EB-A5UM-01 3 156763240 156763240 A G LEKR1 Missense_Mutation p.S594G 0.26 tolerated(0.34) benign(0) TCGA-EB-A5UM-01 3 171969266 171969266 C T FNDC3B Missense_Mutation p.P242L 0.22 tolerated(0.08) benign(0) TCGA-EB-A5UM-01 3 175520922 175520922 T A NAALADL2 Silent p.I773I 0.26 TCGA-EB-A5UM-01 3 195938245 195938245 C T ZDHHC19 5'UTR 0.32 TCGA-EB-A5UM-01 3 37055986 37055986 C T MLH1 Silent p.S247S 0.31 TCGA-EB-A5UM-01 3 46001021 46001021 G A FYCO1 Missense_Mutation p.L1151F 0.55 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 3 4808358 4808358 G A ITPR1 Missense_Mutation p.D1882N 0.32 tolerated(0.11) benign(0.125) TCGA-EB-A5UM-01 3 48677424 48677424 C T CELSR3 Silent p.S3198S 0.24 TCGA-EB-A5UM-01 3 50289961 50289961 C T GNAI2 Silent p.P98P 0.29 TCGA-EB-A5UM-01 3 51475776 51475776 G A VPRBP Silent p.D217D 0.33 TCGA-EB-A5UM-01 3 51967526 51967526 G A RRP9 Missense_Mutation p.S475F 0.40 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-EB-A5UM-01 3 52859943 52859943 G A ITIH4 Missense_Mutation p.R240C 0.34 deleterious(0) probably_damaging(0.995) TCGA-EB-A5UM-01 3 53262348 53262348 G A TKT Missense_Mutation p.P483S 0.32 tolerated(0.08) possibly_damaging(0.895) TCGA-EB-A5UM-01 3 54952855 54952855 C T LRTM1 Silent p.R223R 0.38 TCGA-EB-A5UM-01 3 56114906 56114906 A T ERC2 Missense_Mutation p.I527N 0.36 deleterious(0) probably_damaging(0.968) TCGA-EB-A5UM-01 3 57131823 57131823 G A IL17RD Silent p.A636A 0.27 TCGA-EB-A5UM-01 4 103592546 103592546 G A MANBA Silent p.L374L 0.28 TCGA-EB-A5UM-01 4 107956806 107956806 G A DKK2 5'UTR 0.41 TCGA-EB-A5UM-01 4 109670468 109670468 G A ETNPPL Missense_Mutation p.P285S 0.28 deleterious(0.03) probably_damaging(0.986) TCGA-EB-A5UM-01 4 110670740 110670740 G A CFI Missense_Mutation p.S320L 0.35 deleterious(0) benign(0.099) TCGA-EB-A5UM-01 4 111427899 111427899 C T ENPEP Missense_Mutation p.S342F 0.60 deleterious(0.01) possibly_damaging(0.824) TCGA-EB-A5UM-01 4 115998159 115998159 G A NDST4 Nonsense_Mutation p.R12* 0.55 TCGA-EB-A5UM-01 4 123844233 123844233 C T SPATA5 5'UTR 0.38 TCGA-EB-A5UM-01 4 130030875 130030875 C T C4orf33 Intron 0.44 TCGA-EB-A5UM-01 4 146576528 146576528 C T MMAA Missense_Mutation p.A400V 0.46 tolerated(0.35) benign(0.001) TCGA-EB-A5UM-01 4 156281378 156281378 G A MAP9 Missense_Mutation p.P331L 0.30 deleterious(0.03) possibly_damaging(0.736) TCGA-EB-A5UM-01 4 156618000 156618000 G A GUCY1A3 5'UTR 0.44 TCGA-EB-A5UM-01 4 159573121 159573123 CCT TC RXFP1 Frame_Shift_Del p.P730Sfs*3 0.32 TCGA-EB-A5UM-01 4 159573197 159573197 C T RXFP1 Missense_Mutation p.S755F 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.781) TCGA-EB-A5UM-01 4 164393849 164393849 C T TKTL2 Silent p.T346T 0.38 TCGA-EB-A5UM-01 4 16510261 16510261 G A LDB2 Missense_Mutation p.S263F 0.18 deleterious(0) probably_damaging(0.99) TCGA-EB-A5UM-01 4 167012377 167012377 G A TLL1 Missense_Mutation p.R847Q 0.27 deleterious(0.04) benign(0.384) TCGA-EB-A5UM-01 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.44 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UM-01 4 175898140 175898140 G A ADAM29 Silent p.K488K 0.23 TCGA-EB-A5UM-01 4 185012385 185012385 G A ENPP6 Missense_Mutation p.P423L 0.41 tolerated(0.72) benign(0) TCGA-EB-A5UM-01 4 187000064 187000064 A G TLR3 Missense_Mutation p.E171G 0.18 tolerated(0.12) benign(0.04) TCGA-EB-A5UM-01 4 187004356 187004356 C T TLR3 Missense_Mutation p.R506C 0.21 tolerated(0.14) benign(0.354) TCGA-EB-A5UM-01 4 38126600 38126600 G A TBC1D1 Missense_Mutation p.G994R 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 4 39876020 39876020 G A PDS5A Silent p.P722P 0.34 TCGA-EB-A5UM-01 4 5624545 5624545 G A EVC2 Silent p.T740T 0.25 TCGA-EB-A5UM-01 4 69533852 69533852 C T UGT2B15 Missense_Mutation p.R260Q 0.31 deleterious(0.03) possibly_damaging(0.474) TCGA-EB-A5UM-01 4 7002915 7002915 C T TBC1D14 Missense_Mutation p.P403S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 4 71067174 71067174 C T ODAM Missense_Mutation p.P178S 0.42 deleterious(0.03) probably_damaging(0.932) TCGA-EB-A5UM-01 4 71067175 71067175 C T ODAM Missense_Mutation p.P178L 0.42 deleterious(0.03) probably_damaging(0.958) TCGA-EB-A5UM-01 4 71628238 71628238 C T RUFY3 Missense_Mutation p.P61S 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A5UM-01 4 71840938 71840938 T C MOB1B Missense_Mutation p.I120T 0.48 deleterious(0.02) probably_damaging(0.983) TCGA-EB-A5UM-01 4 74276060 74276060 C T ALB Missense_Mutation p.S216L 0.20 tolerated(0.38) benign(0.041) TCGA-EB-A5UM-01 4 79343054 79343054 C T FRAS1 Silent p.I1526I 0.37 TCGA-EB-A5UM-01 4 80327881 80327881 G A GK2 Nonsense_Mutation p.Q492* 0.30 TCGA-EB-A5UM-01 4 81967420 81967420 C T BMP3 Missense_Mutation p.S282F 0.25 deleterious(0) possibly_damaging(0.62) TCGA-EB-A5UM-01 4 8217908 8217908 G A SH3TC1 Silent p.E184E 0.38 TCGA-EB-A5UM-01 4 8229273 8229273 G A SH3TC1 Missense_Mutation p.E618K 0.30 deleterious(0.01) possibly_damaging(0.779) TCGA-EB-A5UM-01 4 88767406 88767406 A G MEPE Missense_Mutation p.I462M 0.44 tolerated(0.2) benign(0.308) TCGA-EB-A5UM-01 4 94006392 94006392 C T GRID2 Missense_Mutation p.A164V 0.23 tolerated(0.37) benign(0.158) TCGA-EB-A5UM-01 4 94006393 94006393 C T GRID2 Silent p.A164A 0.23 TCGA-EB-A5UM-01 5 10227484 10227484 G A FAM173B 3'UTR 0.50 TCGA-EB-A5UM-01 5 115822613 115822613 G A SEMA6A Missense_Mutation p.S265F 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 5 126993252 126993252 C T CTXN3 Silent p.P13P 0.42 TCGA-EB-A5UM-01 5 127636570 127636570 C T FBN2 Silent p.L2035L 0.39 TCGA-EB-A5UM-01 5 128983534 128983534 C T ADAMTS19 Missense_Mutation p.P644L 0.26 tolerated(0.26) benign(0.002) TCGA-EB-A5UM-01 5 131042224 131042224 A G FNIP1 Missense_Mutation p.L265S 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5UM-01 5 131528728 131528728 G A P4HA2 Missense_Mutation p.P528L 0.26 deleterious(0) probably_damaging(0.918) TCGA-EB-A5UM-01 5 131528729 131528729 G A P4HA2 Missense_Mutation p.P528S 0.26 deleterious(0.02) possibly_damaging(0.881) TCGA-EB-A5UM-01 5 131915024 131915024 C T RAD50 Silent p.V127V 0.49 TCGA-EB-A5UM-01 5 1338022 1338022 C T CLPTM1L Silent p.L225L 0.22 TCGA-EB-A5UM-01 5 13794162 13794162 C T DNAH5 Silent p.T2631T 0.24 TCGA-EB-A5UM-01 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.38 deleterious_low_confidence(0.02) benign(0.081) TCGA-EB-A5UM-01 5 140208483 140208483 G A PCDHA6 Silent p.R269R 0.24 TCGA-EB-A5UM-01 5 140475020 140475020 G A PCDHB2 Missense_Mutation p.A216T 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A5UM-01 5 140559097 140559097 C T PCDHB8 Silent p.P494P 0.11 TCGA-EB-A5UM-01 5 140594824 140594824 G A PCDHB13 Missense_Mutation p.G377R 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.48) TCGA-EB-A5UM-01 5 140605201 140605201 C T PCDHB14 Silent p.F708F 0.38 TCGA-EB-A5UM-01 5 140699265 140699265 G A TAF7 Missense_Mutation p.P116L 0.27 tolerated(0.79) possibly_damaging(0.742) TCGA-EB-A5UM-01 5 140730217 140730217 C T PCDHGB1 Silent p.F130F 0.14 TCGA-EB-A5UM-01 5 145379738 145379738 G A SH3RF2 Missense_Mutation p.E166K 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A5UM-01 5 145838586 145838586 C T TCERG1 Missense_Mutation p.A193V 0.29 tolerated_low_confidence(0.08) unknown(0) TCGA-EB-A5UM-01 5 14681618 14681618 C T FAM105B Missense_Mutation p.R124C 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 5 148748036 148748036 C T PCYOX1L Missense_Mutation p.P435L 0.40 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UM-01 5 157078279 157078279 C T SOX30 Missense_Mutation p.G270R 0.30 deleterious(0.04) possibly_damaging(0.685) TCGA-EB-A5UM-01 5 161580111 161580111 G A GABRG2 Missense_Mutation p.D429N 0.36 tolerated(0.34) possibly_damaging(0.772) TCGA-EB-A5UM-01 5 172571543 172571543 C T BNIP1 5'UTR 0.33 TCGA-EB-A5UM-01 5 172750341 172750341 C T STC2 Silent p.R129R 0.33 TCGA-EB-A5UM-01 5 175306914 175306914 G A CPLX2 Missense_Mutation p.E91K 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A5UM-01 5 176523630 176523630 G A FGFR4 Missense_Mutation p.E681K 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 5 179554661 179554661 G A RASGEF1C Missense_Mutation p.P221L 0.34 deleterious(0) possibly_damaging(0.859) TCGA-EB-A5UM-01 5 23522810 23522810 G A PRDM9 Missense_Mutation p.G233E 0.29 deleterious(0.03) possibly_damaging(0.603) TCGA-EB-A5UM-01 5 26881162 26881162 C T CDH9 3'UTR 0.33 TCGA-EB-A5UM-01 5 26902715 26902715 C T CDH9 Missense_Mutation p.E375K 0.27 tolerated(0.23) benign(0.295) TCGA-EB-A5UM-01 5 35965875 35965875 G A UGT3A1 Silent p.F152F 0.32 TCGA-EB-A5UM-01 5 40716594 40716594 G A TTC33 Nonsense_Mutation p.R148* 0.32 TCGA-EB-A5UM-01 5 41018442 41018442 C T MROH2B Splice_Site p.X921_splice 0.38 TCGA-EB-A5UM-01 5 41149447 41149447 C T C6 Missense_Mutation p.G840D 0.36 tolerated(0.68) benign(0.021) TCGA-EB-A5UM-01 5 50090055 50090055 T A PARP8 Missense_Mutation p.F251Y 0.43 deleterious(0.01) benign(0.012) TCGA-EB-A5UM-01 5 54281129 54281129 C T ESM1 Missense_Mutation p.D73N 0.48 tolerated(0.16) probably_damaging(0.986) TCGA-EB-A5UM-01 5 89939763 89939763 G T GPR98 Silent p.V899V 0.29 TCGA-EB-A5UM-01 6 116973262 116973262 G A ZUFSP Missense_Mutation p.S352F 0.50 deleterious(0) possibly_damaging(0.683) TCGA-EB-A5UM-01 6 12120528 12120528 C T HIVEP1 Missense_Mutation p.S167F 0.15 deleterious(0) probably_damaging(0.968) TCGA-EB-A5UM-01 6 12120529 12120529 C T HIVEP1 Silent p.S167S 0.15 TCGA-EB-A5UM-01 6 144109959 144109959 G A PHACTR2 Missense_Mutation p.R586Q 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A5UM-01 6 160921913 160921913 G A LPAL2 RNA 0.53 TCGA-EB-A5UM-01 6 170632308 170632308 C T FAM120B Nonsense_Mutation p.R626* 0.64 TCGA-EB-A5UM-01 6 25966938 25966938 G A TRIM38 Missense_Mutation p.R63Q 0.25 tolerated(0.2) benign(0.094) TCGA-EB-A5UM-01 6 29625051 29625051 T - MOG Frame_Shift_Del p.L22Pfs*13 0.62 TCGA-EB-A5UM-01 6 30681431 30681431 G A MDC1 Missense_Mutation p.P194L 0.56 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UM-01 6 32187921 32187921 C T NOTCH4 Missense_Mutation p.D434N 0.19 tolerated(0.06) probably_damaging(1) TCGA-EB-A5UM-01 6 33679350 33679350 G A UQCC2 Silent p.A38A 0.07 TCGA-EB-A5UM-01 6 35911952 35911952 G A SLC26A8 Missense_Mutation p.R880W 0.60 tolerated_low_confidence(0.19) benign(0.061) TCGA-EB-A5UM-01 6 36106769 36106769 G A MAPK13 Missense_Mutation p.E319K 0.26 tolerated(0.51) benign(0.128) TCGA-EB-A5UM-01 6 37250042 37250042 C T TBC1D22B Missense_Mutation p.S168L 0.19 deleterious(0.01) benign(0.034) TCGA-EB-A5UM-01 6 42236018 42236018 C T TRERF1 Silent p.A437A 0.71 TCGA-EB-A5UM-01 6 42848633 42848633 C T RPL7L1 Silent p.L17L 0.21 TCGA-EB-A5UM-01 6 42883815 42883815 G A PTCRA Missense_Mutation p.G3D 0.18 deleterious_low_confidence(0.04) unknown(0) TCGA-EB-A5UM-01 6 43190535 43190535 G A CUL9 Missense_Mutation p.V2351M 0.12 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UM-01 6 46803250 46803250 G A MEP1A Missense_Mutation p.G683D 0.19 deleterious(0) probably_damaging(0.989) TCGA-EB-A5UM-01 6 46977219 46977219 A C GPR110 Missense_Mutation p.V651G 0.25 tolerated(0.4) benign(0.01) TCGA-EB-A5UM-01 6 47847072 47847072 G A PTCHD4 Missense_Mutation p.S503F 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-EB-A5UM-01 6 51523985 51523985 G A PKHD1 Missense_Mutation p.H3647Y 0.06 tolerated(1) benign(0) TCGA-EB-A5UM-01 6 51523986 51523986 T A PKHD1 Silent p.S3646S 0.06 TCGA-EB-A5UM-01 6 51523988 51523988 A G PKHD1 Missense_Mutation p.S3646P 0.06 deleterious(0.05) benign(0.014) TCGA-EB-A5UM-01 6 51913404 51913404 C T PKHD1 Missense_Mutation p.E765K 0.31 deleterious(0.02) benign(0.13) TCGA-EB-A5UM-01 6 5216901 5216901 G A LYRM4 Nonsense_Mutation p.Q53* 0.18 TCGA-EB-A5UM-01 6 52615393 52615393 C T GSTA2 Silent p.R217R 0.17 TCGA-EB-A5UM-01 6 52995617 52995617 C T GCM1 Missense_Mutation p.G185E 0.11 tolerated(0.36) benign(0.002) TCGA-EB-A5UM-01 6 70964873 70964873 G A COL9A1 Missense_Mutation p.P531S 0.48 probably_damaging(0.995) TCGA-EB-A5UM-01 6 7880488 7880488 C T BMP6 Missense_Mutation p.A485V 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 6 83933494 83933494 G A ME1 Silent p.F478F 0.30 TCGA-EB-A5UM-01 6 87967440 87967440 A T ZNF292 Nonsense_Mutation p.K1365* 0.64 TCGA-EB-A5UM-01 7 100276357 100276357 G A GNB2 Missense_Mutation p.G319E 0.29 deleterious(0.02) probably_damaging(0.934) TCGA-EB-A5UM-01 7 100276358 100276358 G A GNB2 Silent p.G319G 0.29 TCGA-EB-A5UM-01 7 100682230 100682230 T C MUC17 Silent p.S2511S 0.37 TCGA-EB-A5UM-01 7 100701424 100701424 C T MUC17 3'UTR 0.33 TCGA-EB-A5UM-01 7 107323675 107323675 G A SLC26A4 Missense_Mutation p.G265D 0.41 tolerated(0.51) possibly_damaging(0.474) TCGA-EB-A5UM-01 7 107434952 107434952 C T SLC26A3 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EB-A5UM-01 7 117375330 117375330 G A CTTNBP2 Silent p.F1227F 0.24 TCGA-EB-A5UM-01 7 123256301 123256301 G A ASB15 Missense_Mutation p.R45K 0.17 tolerated(1) benign(0.002) TCGA-EB-A5UM-01 7 133824223 133824223 G A LRGUK Missense_Mutation p.G147E 0.33 tolerated(0.42) benign(0.037) TCGA-EB-A5UM-01 7 141738391 141738391 C T MGAM Silent p.L764L 0.21 TCGA-EB-A5UM-01 7 141750572 141750572 C T MGAM Missense_Mutation p.L905F 0.26 tolerated(0.17) benign(0.018) TCGA-EB-A5UM-01 7 144097292 144097292 C T NOBOX Missense_Mutation p.G320R 0.30 deleterious(0.02) benign(0.177) TCGA-EB-A5UM-01 7 150389580 150389580 G A GIMAP2 Missense_Mutation p.G69E 0.17 tolerated(0.16) benign(0.091) TCGA-EB-A5UM-01 7 150706110 150706110 C T NOS3 Silent p.Y735Y 0.17 TCGA-EB-A5UM-01 7 16823129 16823129 G A TSPAN13 3'UTR 0.37 TCGA-EB-A5UM-01 7 17833826 17833826 C T SNX13 Missense_Mutation p.R906K 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 7 17890585 17890585 G A SNX13 Silent p.I280I 0.29 TCGA-EB-A5UM-01 7 21856288 21856288 G A DNAH11 Missense_Mutation p.M3519I 0.23 benign(0) TCGA-EB-A5UM-01 7 23191727 23191727 G A KLHL7 Missense_Mutation p.E279K 0.28 tolerated(0.78) benign(0.004) TCGA-EB-A5UM-01 7 31013747 31013747 G A GHRHR Missense_Mutation p.G249S 0.42 deleterious(0.01) possibly_damaging(0.687) TCGA-EB-A5UM-01 7 37252991 37252991 G A ELMO1 Silent p.T301T 0.29 TCGA-EB-A5UM-01 7 65842436 65842436 C T LINC00174 RNA 0.30 TCGA-EB-A5UM-01 7 75583414 75583414 C T POR Missense_Mutation p.S35L 0.18 tolerated(0.42) benign(0.102) TCGA-EB-A5UM-01 7 88963486 88963486 G A ZNF804B Missense_Mutation p.S397N 0.36 tolerated(0.38) benign(0.009) TCGA-EB-A5UM-01 7 91714954 91714954 C T AKAP9 Missense_Mutation p.S2993F 0.25 possibly_damaging(0.872) TCGA-EB-A5UM-01 7 92762752 92762752 G A SAMD9L Missense_Mutation p.P845S 0.34 deleterious(0) benign(0.11) TCGA-EB-A5UM-01 7 97851721 97851721 G A TECPR1 Missense_Mutation p.S1014F 0.55 deleterious(0) probably_damaging(0.932) TCGA-EB-A5UM-01 8 10584016 10584016 G A SOX7 Silent p.F185F 0.25 TCGA-EB-A5UM-01 8 106456604 106456604 G A ZFPM2 Missense_Mutation p.G99E 0.44 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UM-01 8 119945315 119945315 G A TNFRSF11B Silent p.P85P 0.31 TCGA-EB-A5UM-01 8 120114596 120114596 G T COLEC10 Missense_Mutation p.G101V 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 8 139164537 139164537 G A FAM135B Silent p.S727S 0.21 TCGA-EB-A5UM-01 8 144943684 144943684 G A EPPK1 Silent p.G1246G 0.50 TCGA-EB-A5UM-01 8 145135312 145135312 C T EXOSC4 Silent p.G182G 0.30 TCGA-EB-A5UM-01 8 145135313 145135313 C T EXOSC4 Missense_Mutation p.P183S 0.32 deleterious(0.03) benign(0.326) TCGA-EB-A5UM-01 8 145533233 145533233 G A HSF1 Missense_Mutation p.G107S 0.35 deleterious(0) probably_damaging(0.993) TCGA-EB-A5UM-01 8 145533234 145533234 G A HSF1 Missense_Mutation p.G107D 0.33 deleterious(0) possibly_damaging(0.791) TCGA-EB-A5UM-01 8 16021760 16021760 C T MSR1 Missense_Mutation p.E211K 0.42 tolerated(0.27) benign(0.341) TCGA-EB-A5UM-01 8 17920722 17920722 T C ASAH1 Missense_Mutation p.R175G 0.35 deleterious(0) probably_damaging(0.993) TCGA-EB-A5UM-01 8 1842561 1842561 A C ARHGEF10 Missense_Mutation p.Q421H 0.35 tolerated(0.13) benign(0.018) TCGA-EB-A5UM-01 8 24326280 24326280 G A ADAM7 Missense_Mutation p.G194S 0.33 tolerated(0.98) benign(0) TCGA-EB-A5UM-01 8 25341653 25341653 C T CDCA2 Missense_Mutation p.S431F 0.35 deleterious(0) benign(0.376) TCGA-EB-A5UM-01 8 28997699 28997699 G A KIF13B Missense_Mutation p.R832W 0.37 deleterious(0) possibly_damaging(0.544) TCGA-EB-A5UM-01 8 3200887 3200887 G A CSMD1 Missense_Mutation p.S1187F 0.26 probably_damaging(0.999) TCGA-EB-A5UM-01 8 42608352 42608352 C T CHRNA6 Silent p.Q485Q 0.35 TCGA-EB-A5UM-01 8 52258406 52258406 G A PXDNL Missense_Mutation p.H1335Y 0.14 tolerated(0.08) benign(0.003) TCGA-EB-A5UM-01 8 62475374 62475374 A G ASPH Silent p.L456L 0.35 TCGA-EB-A5UM-01 8 65537001 65537001 A C CYP7B1 Missense_Mutation p.L73R 0.30 tolerated(0.21) probably_damaging(0.998) TCGA-EB-A5UM-01 8 66617088 66617088 C T MTFR1 Silent p.L147L 0.29 TCGA-EB-A5UM-01 8 68981310 68981310 G A PREX2 Missense_Mutation p.R461K 0.32 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UM-01 8 77766856 77766856 C T ZFHX4 Missense_Mutation p.H2567Y 0.32 possibly_damaging(0.73) TCGA-EB-A5UM-01 8 85686841 85686841 C T RALYL Missense_Mutation p.P108L 0.31 tolerated(0.26) benign(0.116) TCGA-EB-A5UM-01 8 94767108 94767108 G A TMEM67 5'UTR 0.30 TCGA-EB-A5UM-01 9 100076998 100076998 C T CCDC180 Silent p.S273S 0.73 TCGA-EB-A5UM-01 9 114304771 114304771 G A ZNF483 Missense_Mutation p.G519E 0.44 tolerated(0.05) probably_damaging(0.986) TCGA-EB-A5UM-01 9 121929956 121929956 G A BRINP1 Silent p.V564V 0.56 TCGA-EB-A5UM-01 9 130569553 130569553 C T FPGS Silent p.F189F 0.38 TCGA-EB-A5UM-01 9 131476847 131476847 C T PKN3 Silent p.F496F 0.18 TCGA-EB-A5UM-01 9 134351241 134351241 C T PRRC2B Missense_Mutation p.S1242F 0.32 tolerated(0.07) possibly_damaging(0.498) TCGA-EB-A5UM-01 9 134351242 134351242 C T PRRC2B Silent p.S1242S 0.31 TCGA-EB-A5UM-01 9 138517973 138517973 C T GLT6D1 Missense_Mutation p.E67K 0.40 tolerated(0.09) possibly_damaging(0.474) TCGA-EB-A5UM-01 9 138518031 138518031 C T GLT6D1 Silent p.T47T 0.33 TCGA-EB-A5UM-01 9 139092476 139092476 C T LHX3 Missense_Mutation p.R73H 0.39 deleterious(0) possibly_damaging(0.829) TCGA-EB-A5UM-01 9 139877848 139877848 G A LCNL1 5'UTR 0.67 TCGA-EB-A5UM-01 9 140392578 140392578 C T PNPLA7 Missense_Mutation p.R626Q 0.34 deleterious(0) probably_damaging(0.988) TCGA-EB-A5UM-01 9 140938325 140938325 C T CACNA1B Missense_Mutation p.S1129F 0.31 deleterious(0) probably_damaging(0.961) TCGA-EB-A5UM-01 9 2718272 2718272 C T KCNV2 Missense_Mutation p.P178L 0.37 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UM-01 9 32634363 32634363 C T TAF1L Silent p.R405R 0.22 TCGA-EB-A5UM-01 9 33068879 33068879 G A SMU1 Silent p.A148A 0.33 TCGA-EB-A5UM-01 9 33443475 33443475 G A AQP3 Intron 0.22 TCGA-EB-A5UM-01 9 35074205 35074205 G A FANCG Missense_Mutation p.P590L 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 9 35813677 35813677 C T HINT2 Silent p.K62K 0.36 TCGA-EB-A5UM-01 9 37746649 37746649 G A FRMPD1 Silent p.S1540S 0.30 TCGA-EB-A5UM-01 9 79320977 79320977 C T PRUNE2 Nonsense_Mutation p.W2071* 0.13 TCGA-EB-A5UM-01 9 79325832 79325832 C T PRUNE2 Missense_Mutation p.G453E 0.36 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UM-01 9 97333856 97333856 T A FBP2 Missense_Mutation p.D152V 0.56 deleterious(0.01) probably_damaging(0.955) TCGA-EB-A5UM-01 9 97380116 97380116 G A FBP1 Silent p.P120P 0.26 TCGA-EB-A5UM-01 9 99691304 99691304 G A NUTM2G 5'UTR 0.51 TCGA-EB-A5UM-01 X 106186377 106186377 C T MORC4 Missense_Mutation p.E582K 0.25 deleterious(0.04) benign(0.066) TCGA-EB-A5UM-01 X 107978401 107978401 C T IRS4 Missense_Mutation p.E392K 0.22 deleterious(0.03) benign(0.106) TCGA-EB-A5UM-01 X 111155629 111155629 C T TRPC5 Missense_Mutation p.E264K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 X 114880436 114880436 T A PLS3 Missense_Mutation p.I436N 0.29 deleterious(0) possibly_damaging(0.795) TCGA-EB-A5UM-01 X 117817113 117817113 A T DOCK11 Missense_Mutation p.Y2012F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 X 118250624 118250624 T A KIAA1210 Missense_Mutation p.K162M 0.57 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UM-01 X 12940158 12940158 C T TLR8 Missense_Mutation p.S1000F 0.26 deleterious(0) probably_damaging(0.995) TCGA-EB-A5UM-01 X 130218948 130218948 G A ARHGAP36 Missense_Mutation p.D289N 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 X 130220344 130220344 G A ARHGAP36 Nonsense_Mutation p.W441* 0.38 TCGA-EB-A5UM-01 X 135323382 135323382 C T MAP7D3 Missense_Mutation p.D158N 0.27 tolerated(0.31) probably_damaging(0.928) TCGA-EB-A5UM-01 X 1424524 1424524 G A CSF2RA Intron 0.32 TCGA-EB-A5UM-01 X 151821244 151821244 C T GABRQ Missense_Mutation p.R467C 0.35 tolerated_low_confidence(0.2) benign(0.007) TCGA-EB-A5UM-01 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.24 TCGA-EB-A5UM-01 X 152959641 152959641 C T SLC6A8 Silent p.Y437Y 0.45 TCGA-EB-A5UM-01 X 153039360 153039360 G A PLXNB3 Missense_Mutation p.R1132Q 0.32 tolerated(0.37) benign(0.005) TCGA-EB-A5UM-01 X 153039361 153039361 G A PLXNB3 Silent p.R1132R 0.33 TCGA-EB-A5UM-01 X 153073973 153073973 C T PDZD4 Silent p.V46V 0.12 TCGA-EB-A5UM-01 X 153596421 153596421 G A FLNA Silent p.I137I 0.19 TCGA-EB-A5UM-01 X 154019329 154019329 C A MPP1 Missense_Mutation p.G114W 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A5UM-01 X 17744871 17744871 C A NHS Missense_Mutation p.P861H 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A5UM-01 X 17819351 17819351 G C RAI2 Missense_Mutation p.F260L 0.13 tolerated(0.64) unknown(0) TCGA-EB-A5UM-01 X 19443774 19443774 C T MAP3K15 Silent p.G438G 0.34 TCGA-EB-A5UM-01 X 20212314 20212314 G A RPS6KA3 Missense_Mutation p.S160F 0.37 tolerated(0.1) probably_damaging(1) TCGA-EB-A5UM-01 X 3030235 3030235 C T ARSF Missense_Mutation p.H471Y 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5UM-01 X 3240130 3240130 G A MXRA5 Missense_Mutation p.S1199F 0.37 tolerated(0.32) benign(0.122) TCGA-EB-A5UM-01 X 37027639 37027639 C T FAM47C Missense_Mutation p.R386C 0.31 deleterious(0.01) benign(0.001) TCGA-EB-A5UM-01 X 41333814 41333814 G A NYX Missense_Mutation p.G370S 0.33 tolerated(0.11) possibly_damaging(0.581) TCGA-EB-A5UM-01 X 47498365 47498365 C T ELK1 Missense_Mutation p.G195R 0.62 tolerated(0.24) benign(0.017) TCGA-EB-A5UM-01 X 49192697 49192697 G A GAGE13 Silent p.P70P 0.19 TCGA-EB-A5UM-01 X 55784716 55784716 G A RRAGB Silent p.R355R 0.19 TCGA-EB-A5UM-01 X 5821596 5821596 C T NLGN4X Missense_Mutation p.E375K 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UM-01 X 68382057 68382057 C T PJA1 Missense_Mutation p.R342Q 0.24 tolerated(0.31) benign(0.312) TCGA-EB-A5UM-01 X 70465286 70465286 C A ZMYM3 Silent p.L970L 0.26 TCGA-EB-A5UM-01 X 72433738 72433738 C T NAP1L2 Silent p.V197V 0.32 TCGA-EB-A5UM-01 X 74282223 74282223 C T ABCB7 Silent p.K626K 0.28 TCGA-EB-A5UM-01 X 83128270 83128270 C T CYLC1 Missense_Mutation p.S185F 0.17 tolerated(0.73) possibly_damaging(0.683) TCGA-EB-A5UM-01 X 92964704 92964704 A C FAM133A Missense_Mutation p.K96Q 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A5UN-06 10 106074847 106074847 G A ITPRIP Silent p.F321F 0.19 TCGA-EB-A5UN-06 10 106960904 106960904 G A SORCS3 Silent p.R718R 0.26 TCGA-EB-A5UN-06 10 125426025 125426025 G A GPR26 Silent p.A34A 0.38 TCGA-EB-A5UN-06 10 125426026 125426026 G A GPR26 Missense_Mutation p.D35N 0.42 deleterious(0) possibly_damaging(0.777) TCGA-EB-A5UN-06 10 133954044 133954044 G A JAKMIP3 Silent p.T478T 0.27 TCGA-EB-A5UN-06 10 134012476 134012476 G A DPYSL4 Splice_Site p.X271_splice 0.32 TCGA-EB-A5UN-06 10 16919090 16919090 G A CUBN Missense_Mutation p.S2971F 0.19 tolerated(0.13) probably_damaging(0.925) TCGA-EB-A5UN-06 10 17152941 17152941 G A CUBN Missense_Mutation p.S331F 0.27 tolerated(1) benign(0.001) TCGA-EB-A5UN-06 10 21115400 21115400 C T NEBL Silent p.K615K 0.17 TCGA-EB-A5UN-06 10 3124597 3124597 C T PFKP Missense_Mutation p.R44C 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 10 37506719 37506719 G A ANKRD30A Silent p.R1004R 0.11 TCGA-EB-A5UN-06 10 43622078 43622078 G A RET Missense_Mutation p.G1032D 0.25 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-EB-A5UN-06 10 46999184 46999184 G A GPRIN2 Missense_Mutation p.G102S 0.14 tolerated(0.07) benign(0.209) TCGA-EB-A5UN-06 10 46999699 46999699 G A GPRIN2 Silent p.Q273Q 0.12 TCGA-EB-A5UN-06 10 5541266 5541266 C T CALML5 Missense_Mutation p.E46K 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A5UN-06 10 55582844 55582844 A C PCDH15 Missense_Mutation p.F1550V 0.25 tolerated_low_confidence(0.15) benign(0.003) TCGA-EB-A5UN-06 10 5789305 5789305 G A FAM208B Silent p.E1307E 0.18 TCGA-EB-A5UN-06 10 5922267 5922267 G A ANKRD16 Nonsense_Mutation p.R308* 0.37 TCGA-EB-A5UN-06 10 61432570 61432570 G A SLC16A9 Missense_Mutation p.P100S 0.31 tolerated(0.26) possibly_damaging(0.758) TCGA-EB-A5UN-06 10 64159355 64159355 G A ZNF365 Intron 0.21 TCGA-EB-A5UN-06 10 69571160 69571160 C T DNAJC12 Intron 0.21 TCGA-EB-A5UN-06 10 70404865 70404865 C T TET1 Silent p.F793F 0.29 TCGA-EB-A5UN-06 10 79745092 79745092 C T POLR3A Silent p.Q1026Q 0.31 TCGA-EB-A5UN-06 10 8006232 8006232 A G TAF3 Silent p.A253A 0.22 TCGA-EB-A5UN-06 10 863796 863796 G A LARP4B Missense_Mutation p.P522S 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-EB-A5UN-06 10 90332736 90332736 G A RNLS Silent p.S150S 0.27 TCGA-EB-A5UN-06 10 95279520 95279520 G A CEP55 Missense_Mutation p.E383K 0.21 deleterious(0) possibly_damaging(0.596) TCGA-EB-A5UN-06 10 95517885 95517885 G A LGI1 5'UTR 0.35 TCGA-EB-A5UN-06 10 95791381 95791381 T C PLCE1 Missense_Mutation p.V193A 0.20 tolerated_low_confidence(0.39) benign(0.001) TCGA-EB-A5UN-06 10 96495130 96495130 G A CYP2C18 Missense_Mutation p.D468N 0.31 tolerated(0.1) benign(0.061) TCGA-EB-A5UN-06 10 98111142 98111142 T A OPALIN Missense_Mutation p.K22I 0.30 tolerated_low_confidence(0.17) possibly_damaging(0.844) TCGA-EB-A5UN-06 11 100064255 100064255 G A CNTN5 Missense_Mutation p.E582K 0.27 deleterious(0) possibly_damaging(0.861) TCGA-EB-A5UN-06 11 102196011 102196011 C T BIRC3 Silent p.A257A 0.11 TCGA-EB-A5UN-06 11 102646024 102646024 G A MMP10 Missense_Mutation p.P321S 0.16 tolerated(0.8) benign(0.001) TCGA-EB-A5UN-06 11 105924695 105924695 C T KBTBD3 Missense_Mutation p.V241M 0.21 deleterious(0.01) possibly_damaging(0.842) TCGA-EB-A5UN-06 11 10651259 10651259 C T MRVI1 Splice_Site p.X134_splice 0.19 TCGA-EB-A5UN-06 11 113286191 113286191 G A DRD2 Silent p.T225T 0.16 TCGA-EB-A5UN-06 11 114401507 114401507 C T NXPE1 5'UTR 0.17 TCGA-EB-A5UN-06 11 119170216 119170216 G A CBL Missense_Mutation p.G816S 0.17 tolerated_low_confidence(0.34) benign(0.004) TCGA-EB-A5UN-06 11 121428098 121428098 C T SORL1 Missense_Mutation p.L883F 0.21 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 11 123676613 123676613 C T OR6M1 Missense_Mutation p.G149R 0.22 deleterious(0) probably_damaging(0.992) TCGA-EB-A5UN-06 11 1267248 1267248 G A MUC5B Silent p.R3046R 0.17 TCGA-EB-A5UN-06 11 1275410 1275410 G A MUC5B Missense_Mutation p.M5102I 0.15 unknown(0) TCGA-EB-A5UN-06 11 128781897 128781897 G A KCNJ5 Silent p.Q243Q 0.24 TCGA-EB-A5UN-06 11 17035682 17035682 C T PLEKHA7 Missense_Mutation p.M51I 0.23 tolerated(0.18) benign(0.014) TCGA-EB-A5UN-06 11 17414513 17414513 G A ABCC8 3'UTR 0.17 TCGA-EB-A5UN-06 11 17482058 17482058 C T ABCC8 Missense_Mutation p.E330K 0.22 tolerated(0.36) benign(0.029) TCGA-EB-A5UN-06 11 18579815 18579815 G A UEVLD Silent p.D225D 0.17 TCGA-EB-A5UN-06 11 18955729 18955729 C T MRGPRX1 Silent p.R201R 0.12 TCGA-EB-A5UN-06 11 19077810 19077810 C T MRGPRX2 Missense_Mutation p.G47E 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-EB-A5UN-06 11 20129301 20129301 C T NAV2 Silent p.L2370L 0.21 TCGA-EB-A5UN-06 11 31653795 31653795 T C ELP4 Missense_Mutation p.I257T 0.15 deleterious(0) possibly_damaging(0.772) TCGA-EB-A5UN-06 11 35287294 35287294 C T SLC1A2 Missense_Mutation p.R478K 0.24 deleterious(0) probably_damaging(0.936) TCGA-EB-A5UN-06 11 43941499 43941499 A T ALKBH3 Missense_Mutation p.E267V 0.26 tolerated(0.12) benign(0.279) TCGA-EB-A5UN-06 11 45671184 45671184 C T CHST1 3'UTR 0.19 TCGA-EB-A5UN-06 11 45949039 45949039 C T GYLTL1B Missense_Mutation p.P500L 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 11 46745000 46745000 C T F2 Missense_Mutation p.T164I 0.16 tolerated(0.3) benign(0.008) TCGA-EB-A5UN-06 11 4825126 4825126 A G OR52R1 Missense_Mutation p.F162S 0.21 tolerated(0.05) possibly_damaging(0.597) TCGA-EB-A5UN-06 11 4903827 4903827 G A OR51T1 Missense_Mutation p.R260Q 0.31 tolerated(0.18) benign(0.19) TCGA-EB-A5UN-06 11 49597954 49597954 C T RP11-707M1.1 RNA 0.14 TCGA-EB-A5UN-06 11 5020480 5020480 G A OR51L1 Missense_Mutation p.D90N 0.18 tolerated(1) benign(0.004) TCGA-EB-A5UN-06 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.24 tolerated(1) benign(0.04) TCGA-EB-A5UN-06 11 56344874 56344874 C T OR5M10 Silent p.V108V 0.24 TCGA-EB-A5UN-06 11 56510999 56510999 G A OR9G4 Silent p.L97L 0.30 TCGA-EB-A5UN-06 11 56756481 56756481 C T OR5AK2 Silent p.F31F 0.15 TCGA-EB-A5UN-06 11 5862234 5862234 T C OR52E6 Silent p.K298K 0.19 TCGA-EB-A5UN-06 11 60563046 60563046 G C MS4A10 Missense_Mutation p.E171Q 0.23 tolerated(0.06) possibly_damaging(0.859) TCGA-EB-A5UN-06 11 6231373 6231373 G A C11orf42 Silent p.K122K 0.23 TCGA-EB-A5UN-06 11 62377144 62377144 G A EML3 Silent p.S197S 0.26 TCGA-EB-A5UN-06 11 63487686 63487686 T G RTN3 Missense_Mutation p.I571S 0.21 tolerated(0.22) benign(0.004) TCGA-EB-A5UN-06 11 63487688 63487688 C T RTN3 Missense_Mutation p.L572F 0.21 tolerated(0.08) possibly_damaging(0.777) TCGA-EB-A5UN-06 11 63885560 63885560 G A FLRT1 Silent p.K607K 0.18 TCGA-EB-A5UN-06 11 64338523 64338523 C T SLC22A11 3'UTR 0.22 TCGA-EB-A5UN-06 11 64418973 64418973 G A NRXN2 Missense_Mutation p.P891L 0.24 tolerated(0.89) possibly_damaging(0.895) TCGA-EB-A5UN-06 11 65617484 65617484 G T SNX32 Nonsense_Mutation p.E79* 0.24 TCGA-EB-A5UN-06 11 66083787 66083787 C G CD248 Missense_Mutation p.D238H 0.15 deleterious(0) possibly_damaging(0.903) TCGA-EB-A5UN-06 11 66620010 66620010 C T PC Silent p.Q575Q 0.23 TCGA-EB-A5UN-06 11 66834233 66834233 G T RHOD Missense_Mutation p.R82L 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 11 6867476 6867476 T C OR10A5 Missense_Mutation p.L188P 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 11 69514186 69514186 G A FGF19 Silent p.F165F 0.17 TCGA-EB-A5UN-06 11 70184524 70184524 C T PPFIA1 Silent p.D512D 0.31 TCGA-EB-A5UN-06 11 70333466 70333466 G A SHANK2 Missense_Mutation p.R979C 0.21 deleterious(0) possibly_damaging(0.721) TCGA-EB-A5UN-06 11 70333467 70333467 G A SHANK2 Silent p.F978F 0.21 TCGA-EB-A5UN-06 11 7064949 7064949 G A NLRP14 Missense_Mutation p.M564I 0.12 tolerated(0.97) benign(0.002) TCGA-EB-A5UN-06 11 71150108 71150108 A T DHCR7 Missense_Mutation p.F216L 0.14 tolerated(0.52) benign(0.012) TCGA-EB-A5UN-06 11 76062847 76062847 A G PRKRIR Silent p.D449D 0.16 TCGA-EB-A5UN-06 11 7981715 7981715 C T NLRP10 Missense_Mutation p.E482K 0.25 tolerated(0.07) benign(0.008) TCGA-EB-A5UN-06 11 82991202 82991202 G A CCDC90B Nonsense_Mutation p.Q68* 0.26 TCGA-EB-A5UN-06 11 85447645 85447645 G A SYTL2 Missense_Mutation p.P161L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A5UN-06 11 88780633 88780633 G A GRM5 Silent p.S136S 0.23 TCGA-EB-A5UN-06 11 89537590 89537590 G A TRIM49 Silent p.P16P 0.15 TCGA-EB-A5UN-06 11 92533644 92533644 G A FAT3 Missense_Mutation p.A2489T 0.20 probably_damaging(0.961) TCGA-EB-A5UN-06 11 92569765 92569765 G A FAT3 Missense_Mutation p.G3374R 0.15 probably_damaging(1) TCGA-EB-A5UN-06 11 92573798 92573798 C T FAT3 Missense_Mutation p.P3480L 0.30 probably_damaging(0.981) TCGA-EB-A5UN-06 11 94204801 94204801 A - MRE11A Frame_Shift_Del p.Y262Ifs*19 0.09 TCGA-EB-A5UN-06 12 108589840 108589840 G A WSCD2 Silent p.R77R 0.17 TCGA-EB-A5UN-06 12 110944415 110944415 C T RAD9B Missense_Mutation p.S102F 0.21 deleterious(0.03) possibly_damaging(0.804) TCGA-EB-A5UN-06 12 112116993 112116993 G A BRAP Missense_Mutation p.P199S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UN-06 12 112186239 112186239 C T ACAD10 Silent p.I899I 0.18 TCGA-EB-A5UN-06 12 117014259 117014259 T C MAP1LC3B2 3'UTR 0.40 TCGA-EB-A5UN-06 12 117662831 117662831 G A NOS1 Silent p.I1306I 0.19 TCGA-EB-A5UN-06 12 118198813 118198813 C A KSR2 Intron 0.17 TCGA-EB-A5UN-06 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.15 probably_damaging(0.996) TCGA-EB-A5UN-06 12 125396965 125396965 G A UBC Silent p.L451L 0.17 TCGA-EB-A5UN-06 12 129822207 129822207 T G TMEM132D Missense_Mutation p.D424A 0.15 deleterious(0.02) possibly_damaging(0.856) TCGA-EB-A5UN-06 12 14613832 14613832 T A ATF7IP Missense_Mutation p.S854R 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-EB-A5UN-06 12 14794032 14794032 G A GUCY2C Silent p.S684S 0.21 TCGA-EB-A5UN-06 12 15656964 15656964 C T PTPRO Nonsense_Mutation p.R410* 0.19 TCGA-EB-A5UN-06 12 15669713 15669713 G A PTPRO Silent p.K534K 0.16 TCGA-EB-A5UN-06 12 18234369 18234369 C T RERGL Missense_Mutation p.R125Q 0.23 tolerated(0.81) benign(0.004) TCGA-EB-A5UN-06 12 18889190 18889190 G A PLCZ1 Missense_Mutation p.R34W 0.30 deleterious(0) possibly_damaging(0.517) TCGA-EB-A5UN-06 12 2676915 2676915 C T CACNA1C Missense_Mutation p.S617F 0.31 deleterious(0) probably_damaging(0.949) TCGA-EB-A5UN-06 12 30866796 30866796 G A CAPRIN2 Missense_Mutation p.P842S 0.11 tolerated(0.07) benign(0.209) TCGA-EB-A5UN-06 12 32945316 32945316 C T PKP2 3'UTR 0.19 TCGA-EB-A5UN-06 12 33579307 33579307 T G SYT10 Missense_Mutation p.N92T 0.32 tolerated(0.33) benign(0.05) TCGA-EB-A5UN-06 12 45417530 45417530 C T DBX2 Missense_Mutation p.R216Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 12 48240500 48240500 C G VDR Missense_Mutation p.D333H 0.19 deleterious(0.04) probably_damaging(0.967) TCGA-EB-A5UN-06 12 48723377 48723377 G A H1FNT Silent p.R101R 0.16 TCGA-EB-A5UN-06 12 4872467 4872467 G A GALNT8 Missense_Mutation p.E470K 0.18 tolerated(0.82) benign(0.001) TCGA-EB-A5UN-06 12 50045917 50045917 G A FMNL3 Nonsense_Mutation p.R468* 0.25 TCGA-EB-A5UN-06 12 52771817 52771817 C T KRT84 3'UTR 0.19 TCGA-EB-A5UN-06 12 52946569 52946569 G A KRT71 Missense_Mutation p.P98L 0.17 tolerated(0.11) benign(0.011) TCGA-EB-A5UN-06 12 53170629 53170629 C T KRT76 Silent p.G149G 0.14 TCGA-EB-A5UN-06 12 53452878 53452878 C T TENC1 Nonsense_Mutation p.Q495* 0.23 TCGA-EB-A5UN-06 12 54688960 54688960 C T NFE2 Missense_Mutation p.E25K 0.23 deleterious(0.01) benign(0.125) TCGA-EB-A5UN-06 12 54802557 54802557 C T ITGA5 Missense_Mutation p.G225E 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 12 55250568 55250568 G A MUCL1 Missense_Mutation p.D39N 0.31 tolerated_low_confidence(0.18) unknown(0) TCGA-EB-A5UN-06 12 55420545 55420545 G A NEUROD4 Missense_Mutation p.D108N 0.16 deleterious(0) probably_damaging(0.975) TCGA-EB-A5UN-06 12 56755113 56755113 G A APOF Silent p.L293L 0.15 TCGA-EB-A5UN-06 12 57351242 57351242 C T RDH16 Nonsense_Mutation p.W2* 0.23 TCGA-EB-A5UN-06 12 57865714 57865714 C T GLI1 Missense_Mutation p.S1064F 0.20 deleterious(0.03) possibly_damaging(0.474) TCGA-EB-A5UN-06 12 57865815 57865815 G T GLI1 Nonsense_Mutation p.E1098* 0.14 TCGA-EB-A5UN-06 12 58112150 58112150 C T OS9 Silent p.L452L 0.19 TCGA-EB-A5UN-06 12 6030305 6030305 C T ANO2 Silent p.L141L 0.25 TCGA-EB-A5UN-06 12 64678484 64678484 C T C12orf56 Missense_Mutation p.E264K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 12 68052132 68052132 C T DYRK2 Missense_Mutation p.S482F 0.25 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UN-06 12 68696517 68696517 G A MDM1 Missense_Mutation p.P619S 0.23 tolerated(0.37) benign(0.119) TCGA-EB-A5UN-06 12 6965272 6965272 C T USP5 Silent p.A132A 0.19 TCGA-EB-A5UN-06 12 7050044 7050044 C T ATN1 Silent p.A1072A 0.16 TCGA-EB-A5UN-06 12 7639517 7639517 G A CD163 Missense_Mutation p.P706S 0.21 tolerated(1) benign(0.014) TCGA-EB-A5UN-06 12 80764355 80764355 G A OTOGL Silent p.G2198G 0.26 TCGA-EB-A5UN-06 12 8197475 8197475 C T FOXJ2 Silent p.I246I 0.24 TCGA-EB-A5UN-06 12 85674156 85674156 C T ALX1 Silent p.S39S 0.23 TCGA-EB-A5UN-06 12 8691819 8691819 C T CLEC4E Missense_Mutation p.G72R 0.30 tolerated(0.12) possibly_damaging(0.671) TCGA-EB-A5UN-06 12 91449339 91449339 G A KERA Silent p.A240A 0.23 TCGA-EB-A5UN-06 12 9161635 9161635 G A KLRG1 Nonsense_Mutation p.W141* 0.20 TCGA-EB-A5UN-06 12 95907507 95907507 C T METAP2 Missense_Mutation p.R422C 0.16 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UN-06 12 96361620 96361620 G A AMDHD1 Silent p.%3D 0.44 TCGA-EB-A5UN-06 13 100425195 100425195 G A CLYBL Silent p.K60K 0.27 TCGA-EB-A5UN-06 13 110838731 110838731 C T COL4A1 Splice_Site p.X633_splice 0.24 TCGA-EB-A5UN-06 13 110838732 110838732 C T COL4A1 Missense_Mutation p.G633S 0.24 possibly_damaging(0.855) TCGA-EB-A5UN-06 13 20220820 20220820 A T MPHOSPH8 Missense_Mutation p.I203F 0.36 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-EB-A5UN-06 13 28124527 28124527 G A LNX2 Missense_Mutation p.P627L 0.30 deleterious(0) probably_damaging(0.938) TCGA-EB-A5UN-06 13 28608267 28608267 A T FLT3 Missense_Mutation p.Y597N 0.37 deleterious(0.01) benign(0.102) TCGA-EB-A5UN-06 13 29287571 29287571 G A SLC46A3 Silent p.F102F 0.23 TCGA-EB-A5UN-06 13 66878979 66878979 C T PCDH9 Silent p.V1174V 0.31 TCGA-EB-A5UN-06 13 95055478 95055478 G A GPC6 3'UTR 0.32 TCGA-EB-A5UN-06 14 101533120 101533120 C T MIR656 RNA 0.26 TCGA-EB-A5UN-06 14 102829220 102829220 G A CINP 5'Flank 0.19 TCGA-EB-A5UN-06 14 103566814 103566814 C T EXOC3L4 Silent p.S86S 0.20 TCGA-EB-A5UN-06 14 106322144 106322144 C T IGHM Silent p.L60L 0.21 TCGA-EB-A5UN-06 14 106357576 106357576 C T IGHD6-19 Translation_Start_Site p.G1? 0.11 unknown(0) TCGA-EB-A5UN-06 14 106452697 106452697 C T IGHV1-2 Missense_Mutation p.D109N 0.24 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UN-06 14 106453086 106453086 G A IGHV1-2 Silent p.I7I 0.14 TCGA-EB-A5UN-06 14 106494429 106494429 G A IGHV2-5 Silent p.I21I 0.17 TCGA-EB-A5UN-06 14 106518618 106518618 C T IGHV3-7 Missense_Mutation p.G45R 0.22 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-EB-A5UN-06 14 107170163 107170163 G A IGHV1-69 Missense_Mutation p.S40F 0.14 deleterious(0.01) possibly_damaging(0.583) TCGA-EB-A5UN-06 14 107170347 107170347 G A IGHV1-69 Silent p.F7F 0.10 TCGA-EB-A5UN-06 14 20216065 20216065 A C OR4Q3 Missense_Mutation p.Q160P 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5UN-06 14 20345013 20345013 G A OR4K2 Missense_Mutation p.G196D 0.16 tolerated(0.24) probably_damaging(0.969) TCGA-EB-A5UN-06 14 20978835 20978835 G A RNASE10 Missense_Mutation p.V69M 0.26 tolerated(0.06) benign(0.076) TCGA-EB-A5UN-06 14 20978836 20978836 T G RNASE10 Missense_Mutation p.V69G 0.25 deleterious(0) benign(0.229) TCGA-EB-A5UN-06 14 21789532 21789532 C G RPGRIP1 Missense_Mutation p.L528V 0.28 tolerated(0.07) possibly_damaging(0.905) TCGA-EB-A5UN-06 14 22280037 22280037 G A TRAV9-1 Missense_Mutation p.G76R 0.17 tolerated(0.13) benign(0.061) TCGA-EB-A5UN-06 14 22315260 22315260 C T TRAV8-2 Silent p.L66L 0.17 TCGA-EB-A5UN-06 14 22392741 22392741 C T TRAV14DV4 Silent p.F88F 0.18 TCGA-EB-A5UN-06 14 22476351 22476351 C T TRAV19 Missense_Mutation p.S94F 0.17 tolerated(0.1) benign(0.149) TCGA-EB-A5UN-06 14 24885474 24885474 T C NYNRIN Missense_Mutation p.F1507L 0.21 tolerated(0.18) probably_damaging(0.986) TCGA-EB-A5UN-06 14 31404389 31404389 G A STRN3 Missense_Mutation p.S323L 0.25 tolerated(0.06) probably_damaging(0.978) TCGA-EB-A5UN-06 14 51398398 51398398 C T PYGL Missense_Mutation p.G174E 0.25 deleterious(0) probably_damaging(0.989) TCGA-EB-A5UN-06 14 58047965 58047965 C T SLC35F4 Nonsense_Mutation p.W294* 0.12 TCGA-EB-A5UN-06 14 58048034 58048034 C T SLC35F4 Silent p.K271K 0.14 TCGA-EB-A5UN-06 14 63447709 63447709 C T KCNH5 Missense_Mutation p.G275R 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 14 64676296 64676296 G A SYNE2 Silent p.E6180E 0.09 TCGA-EB-A5UN-06 14 70926354 70926354 C T ADAM21 Missense_Mutation p.P713L 0.13 tolerated(0.11) benign(0.003) TCGA-EB-A5UN-06 14 73137988 73137988 C G DPF3 Silent p.T310T 0.27 TCGA-EB-A5UN-06 14 74061780 74061780 G A ACOT4 Missense_Mutation p.G230S 0.18 tolerated(0.2) probably_damaging(1) TCGA-EB-A5UN-06 14 74824745 74824745 C T VRTN Missense_Mutation p.P420L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 14 79111549 79111549 G A NRXN3 5'UTR 0.18 TCGA-EB-A5UN-06 14 81380709 81380709 C T CEP128 Missense_Mutation p.R64Q 0.22 tolerated(1) benign(0.004) TCGA-EB-A5UN-06 14 91662738 91662738 C T C14orf159 Silent p.I405I 0.16 TCGA-EB-A5UN-06 14 93118861 93118861 C T RIN3 Silent p.A489A 0.15 TCGA-EB-A5UN-06 14 93185098 93185098 G A LGMN Missense_Mutation p.S77F 0.21 deleterious(0) benign(0.03) TCGA-EB-A5UN-06 14 94423295 94423295 G A ASB2 Intron 0.13 TCGA-EB-A5UN-06 14 95085773 95085773 C T SERPINA3 Silent p.T295T 0.14 TCGA-EB-A5UN-06 14 95108212 95108212 T A SERPINA13P RNA 0.23 TCGA-EB-A5UN-06 14 96792135 96792135 G A ATG2B Missense_Mutation p.S763F 0.20 deleterious(0.02) possibly_damaging(0.641) TCGA-EB-A5UN-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.16 deleterious(0) probably_damaging(0.931) TCGA-EB-A5UN-06 15 28519457 28519457 G A HERC2 Silent p.F260F 0.13 TCGA-EB-A5UN-06 15 29561250 29561250 C T NDNL2 Silent p.K220K 0.19 TCGA-EB-A5UN-06 15 34638215 34638215 G A NUTM1 5'UTR 0.21 TCGA-EB-A5UN-06 15 39874923 39874923 C T THBS1 Silent p.I199I 0.15 TCGA-EB-A5UN-06 15 42109904 42109904 G A MAPKBP1 Silent p.T631T 0.30 TCGA-EB-A5UN-06 15 43656271 43656271 G A ZSCAN29 Missense_Mutation p.S511F 0.23 tolerated(0.21) benign(0.219) TCGA-EB-A5UN-06 15 43748530 43748530 G A TP53BP1 Missense_Mutation p.S759F 0.22 tolerated_low_confidence(0.31) benign(0.03) TCGA-EB-A5UN-06 15 43749143 43749143 G A TP53BP1 Missense_Mutation p.P555S 0.27 tolerated(0.17) probably_damaging(0.915) TCGA-EB-A5UN-06 15 50489848 50489848 G A SLC27A2 Nonsense_Mutation p.W210* 0.16 TCGA-EB-A5UN-06 15 51535153 51535153 G A CYP19A1 Intron 0.24 TCGA-EB-A5UN-06 15 52539765 52539765 G A MYO5C Nonsense_Mutation p.Q591* 0.22 TCGA-EB-A5UN-06 15 54305841 54305841 T C UNC13C Silent p.F247F 0.21 TCGA-EB-A5UN-06 15 54590048 54590048 G A UNC13C Missense_Mutation p.R1343Q 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EB-A5UN-06 15 54793035 54793035 C T UNC13C Silent p.F1720F 0.19 TCGA-EB-A5UN-06 15 63449644 63449644 G A RPS27L 5'UTR 0.25 TCGA-EB-A5UN-06 15 64381011 64381011 G A FAM96A Missense_Mutation p.T55I 0.23 deleterious(0) benign(0.186) TCGA-EB-A5UN-06 15 66777374 66777374 G A MAP2K1 Nonsense_Mutation p.W247* 0.25 TCGA-EB-A5UN-06 15 66792663 66792663 G A RPL4 Silent p.S295S 0.15 TCGA-EB-A5UN-06 15 69325614 69325614 C T NOX5 Silent p.I284I 0.21 TCGA-EB-A5UN-06 15 72195405 72195405 C T MYO9A Splice_Site p.X960_splice 0.11 TCGA-EB-A5UN-06 15 73635748 73635748 C T HCN4 Missense_Mutation p.R396Q 0.27 deleterious(0) unknown(0) TCGA-EB-A5UN-06 15 76019449 76019449 C T ODF3L1 Silent p.H131H 0.17 TCGA-EB-A5UN-06 15 78385034 78385034 G A SH2D7 Silent p.E36E 0.27 TCGA-EB-A5UN-06 15 78770709 78770709 G A IREB2 Silent p.Q422Q 0.23 TCGA-EB-A5UN-06 15 78927802 78927802 G A CHRNB4 Silent p.S61S 0.17 TCGA-EB-A5UN-06 15 81234615 81234615 G A KIAA1199 Silent p.E1212E 0.25 TCGA-EB-A5UN-06 15 85334079 85334079 G A ZNF592 Silent p.E788E 0.16 TCGA-EB-A5UN-06 15 88423561 88423561 C T NTRK3 Silent p.V758V 0.16 TCGA-EB-A5UN-06 15 90167012 90167012 A T TICRR Missense_Mutation p.L1157F 0.17 tolerated(0.28) benign(0.022) TCGA-EB-A5UN-06 15 99473510 99473510 C T IGF1R Missense_Mutation p.P978S 0.36 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UN-06 15 99473511 99473511 C T IGF1R Missense_Mutation p.P978L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 16 11830040 11830040 A G TXNDC11 Missense_Mutation p.S102P 0.23 tolerated(0.18) possibly_damaging(0.618) TCGA-EB-A5UN-06 16 1370212 1370212 C T UBE2I Silent p.Y87Y 0.14 TCGA-EB-A5UN-06 16 1712502 1712502 C T CRAMP1L Missense_Mutation p.P809S 0.20 tolerated(0.39) benign(0.086) TCGA-EB-A5UN-06 16 19883871 19883871 G A GPRC5B Silent p.F99F 0.18 TCGA-EB-A5UN-06 16 20043797 20043797 C T GPR139 Missense_Mutation p.E108K 0.27 deleterious(0) probably_damaging(0.995) TCGA-EB-A5UN-06 16 21051232 21051232 C T DNAH3 Missense_Mutation p.D1558N 0.25 tolerated(0.17) probably_damaging(0.986) TCGA-EB-A5UN-06 16 22132392 22132392 C T VWA3A Missense_Mutation p.S407F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 16 2230998 2230998 G A CASKIN1 Missense_Mutation p.L791F 0.20 possibly_damaging(0.544) TCGA-EB-A5UN-06 16 22358245 22358245 G A CDR2 3'UTR 0.25 TCGA-EB-A5UN-06 16 23226476 23226476 G C SCNN1G Missense_Mutation p.V546L 0.20 tolerated(0.96) benign(0.328) TCGA-EB-A5UN-06 16 23695342 23695342 C T PLK1 Missense_Mutation p.P323L 0.22 deleterious(0) probably_damaging(0.91) TCGA-EB-A5UN-06 16 23712415 23712415 C T ERN2 Silent p.E456E 0.28 TCGA-EB-A5UN-06 16 23769008 23769008 C T CHP2 3'UTR 0.17 TCGA-EB-A5UN-06 16 27751961 27751961 C T KIAA0556 Silent p.P781P 0.24 TCGA-EB-A5UN-06 16 30486837 30486837 C T ITGAL Missense_Mutation p.S88F 0.21 tolerated(0.17) benign(0.013) TCGA-EB-A5UN-06 16 30664424 30664424 G A PRR14 Silent p.E168E 0.33 TCGA-EB-A5UN-06 16 31087763 31087763 G A ZNF646 Missense_Mutation p.E40K 0.17 deleterious(0) benign(0.263) TCGA-EB-A5UN-06 16 31141913 31141913 C T KAT8 Silent p.S381S 0.14 TCGA-EB-A5UN-06 16 31228283 31228283 A G PYDC1 Missense_Mutation p.F23L 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 16 31487870 31487870 C T TGFB1I1 Silent p.P319P 0.27 TCGA-EB-A5UN-06 16 3306467 3306467 G A MEFV Missense_Mutation p.P41S 0.23 deleterious(0.05) probably_damaging(1) TCGA-EB-A5UN-06 16 3639232 3639232 G A SLX4 Silent p.S1469S 0.25 TCGA-EB-A5UN-06 16 3712001 3712001 C T TRAP1 Missense_Mutation p.E643K 0.32 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UN-06 16 47697641 47697641 C T PHKB Missense_Mutation p.L778F 0.19 tolerated(0.65) benign(0.092) TCGA-EB-A5UN-06 16 48292628 48292628 C T LONP2 Missense_Mutation p.P234S 0.23 tolerated(0.73) benign(0) TCGA-EB-A5UN-06 16 4903027 4903027 G T UBN1 Missense_Mutation p.D37Y 0.14 deleterious(0) possibly_damaging(0.825) TCGA-EB-A5UN-06 16 50707908 50707908 G A SNX20 Silent p.F120F 0.26 TCGA-EB-A5UN-06 16 53532426 53532426 G A AKTIP Missense_Mutation p.S42F 0.19 deleterious(0.03) benign(0.016) TCGA-EB-A5UN-06 16 55600989 55600989 C T CAPNS2 Silent p.V107V 0.20 TCGA-EB-A5UN-06 16 56501149 56501149 C T OGFOD1 Missense_Mutation p.R244W 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 16 67038030 67038030 C T CES4A Missense_Mutation p.P328L 0.23 tolerated(0.06) benign(0.013) TCGA-EB-A5UN-06 16 69752310 69752310 C T NQO1 Missense_Mutation p.M45I 0.17 deleterious(0.02) benign(0.157) TCGA-EB-A5UN-06 16 70732604 70732604 G A VAC14 Missense_Mutation p.T591I 0.17 tolerated(0.07) benign(0.209) TCGA-EB-A5UN-06 16 71101260 71101260 C T HYDIN Missense_Mutation p.E670K 0.15 probably_damaging(0.97) TCGA-EB-A5UN-06 16 71780616 71780616 G A AP1G1 Intron 0.18 TCGA-EB-A5UN-06 16 74425673 74425673 C T NPIPB15 Missense_Mutation p.P343S 0.08 deleterious_low_confidence(0.04) benign(0.377) TCGA-EB-A5UN-06 16 76523744 76523744 T C CNTNAP4 Missense_Mutation p.Y609H 0.24 deleterious(0.04) probably_damaging(0.91) TCGA-EB-A5UN-06 16 836074 836074 G A RPUSD1 Missense_Mutation p.P272L 0.24 tolerated_low_confidence(0.31) benign(0.055) TCGA-EB-A5UN-06 16 84070350 84070350 G A SLC38A8 Silent p.I115I 0.18 TCGA-EB-A5UN-06 16 87741977 87741977 C T KLHDC4 Missense_Mutation p.E515K 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-EB-A5UN-06 16 88747755 88747755 G A SNAI3 Silent p.A148A 0.24 TCGA-EB-A5UN-06 16 89661987 89661987 C T CPNE7 Silent p.F580F 0.22 TCGA-EB-A5UN-06 16 89869692 89869692 G A FANCA Missense_Mutation p.T256I 0.15 tolerated(0.18) possibly_damaging(0.507) TCGA-EB-A5UN-06 17 10418208 10418208 C T MYH1 Silent p.R170R 0.33 TCGA-EB-A5UN-06 17 10435015 10435015 C T MYH2 Missense_Mutation p.E878K 0.25 deleterious(0.03) possibly_damaging(0.562) TCGA-EB-A5UN-06 17 27225771 27225771 G A DHRS13 Silent p.I274I 0.16 TCGA-EB-A5UN-06 17 27287980 27287980 C T SEZ6 Missense_Mutation p.G418R 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 17 29162117 29162117 C T ATAD5 Missense_Mutation p.P340S 0.18 deleterious(0.02) possibly_damaging(0.78) TCGA-EB-A5UN-06 17 2935717 2935717 G A RAP1GAP2 3'UTR 0.42 TCGA-EB-A5UN-06 17 30207592 30207592 C T UTP6 Missense_Mutation p.E323K 0.21 deleterious(0.01) benign(0.394) TCGA-EB-A5UN-06 17 33498383 33498383 G A UNC45B Missense_Mutation p.V580M 0.19 deleterious(0) probably_damaging(0.953) TCGA-EB-A5UN-06 17 33689848 33689848 C T SLFN11 Missense_Mutation p.E327K 0.24 tolerated(0.65) benign(0.074) TCGA-EB-A5UN-06 17 33951553 33951553 C T AP2B1 Silent p.F221F 0.21 TCGA-EB-A5UN-06 17 35310360 35310360 G A AATF Missense_Mutation p.S153N 0.23 tolerated(0.72) benign(0.004) TCGA-EB-A5UN-06 17 36490664 36490664 C T GPR179 Silent p.S569S 0.15 TCGA-EB-A5UN-06 17 38859625 38859625 C T KRT24 Silent p.G107G 0.22 TCGA-EB-A5UN-06 17 38911187 38911187 C T KRT25 Missense_Mutation p.G113S 0.19 tolerated(0.3) benign(0.088) TCGA-EB-A5UN-06 17 39642774 39642774 G A KRT36 Missense_Mutation p.P420S 0.17 tolerated(0.31) benign(0.048) TCGA-EB-A5UN-06 17 40065285 40065285 G C ACLY Missense_Mutation p.F191L 0.11 tolerated(0.75) benign(0.003) TCGA-EB-A5UN-06 17 40837254 40837254 C T CNTNAP1 Silent p.F177F 0.20 TCGA-EB-A5UN-06 17 41006661 41006661 C T AOC3 Silent p.H599H 0.14 TCGA-EB-A5UN-06 17 42336598 42336598 C T SLC4A1 Missense_Mutation p.G270E 0.15 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UN-06 17 42824448 42824448 C T DBF4B Intron 0.18 TCGA-EB-A5UN-06 17 43220921 43220921 C T ACBD4 Silent p.F313F 0.21 TCGA-EB-A5UN-06 17 47583929 47583929 C T NGFR Silent p.N159N 0.11 TCGA-EB-A5UN-06 17 48266790 48266790 C T COL1A1 Missense_Mutation p.G926D 0.14 unknown(0) TCGA-EB-A5UN-06 17 48266791 48266791 C T COL1A1 Missense_Mutation p.G926S 0.14 unknown(0) TCGA-EB-A5UN-06 17 48616258 48616258 C T EPN3 Missense_Mutation p.A232V 0.12 tolerated(0.95) benign(0.004) TCGA-EB-A5UN-06 17 51900899 51900899 G A KIF2B Missense_Mutation p.E169K 0.20 deleterious(0.04) benign(0.26) TCGA-EB-A5UN-06 17 5284731 5284731 A C RABEP1 Missense_Mutation p.R806S 0.27 tolerated(0.42) possibly_damaging(0.595) TCGA-EB-A5UN-06 17 54923082 54923082 C T DGKE Missense_Mutation p.P219L 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 17 59445711 59445711 C T BCAS3 Silent p.L832L 0.16 TCGA-EB-A5UN-06 17 61466797 61466797 C T TANC2 Silent p.F907F 0.28 TCGA-EB-A5UN-06 17 61766961 61766961 C T MAP3K3 Missense_Mutation p.P341L 0.12 deleterious(0) probably_damaging(0.984) TCGA-EB-A5UN-06 17 61882449 61882449 G A DDX42 Missense_Mutation p.E214K 0.15 tolerated(0.1) benign(0.185) TCGA-EB-A5UN-06 17 62782684 62782684 C T hsa-mir-6080 5'Flank 0.24 TCGA-EB-A5UN-06 17 65346451 65346451 G A PSMD12 Missense_Mutation p.A100V 0.38 deleterious(0) possibly_damaging(0.858) TCGA-EB-A5UN-06 17 66267713 66267713 G A SLC16A6 Silent p.F196F 0.19 TCGA-EB-A5UN-06 17 66526524 66526524 C T PRKAR1A Silent p.G360G 0.12 TCGA-EB-A5UN-06 17 66526525 66526525 C T PRKAR1A Missense_Mutation p.P361S 0.11 deleterious(0) possibly_damaging(0.841) TCGA-EB-A5UN-06 17 67267416 67267416 C A ABCA5 Missense_Mutation p.D927Y 0.19 deleterious(0.01) benign(0.169) TCGA-EB-A5UN-06 17 72310381 72310381 T A DNAI2 3'UTR 0.20 TCGA-EB-A5UN-06 17 72539108 72539108 G A CD300C Missense_Mutation p.S140F 0.20 deleterious(0.01) possibly_damaging(0.806) TCGA-EB-A5UN-06 17 73239173 73239173 G A GGA3 Missense_Mutation p.P167S 0.20 tolerated(0.16) possibly_damaging(0.572) TCGA-EB-A5UN-06 17 73502388 73502388 C G CASKIN2 Missense_Mutation p.E242Q 0.14 tolerated(0.18) benign(0.286) TCGA-EB-A5UN-06 17 73815766 73815766 G A UNK Silent p.E516E 0.26 TCGA-EB-A5UN-06 17 74005451 74005451 C T EVPL Missense_Mutation p.E1279K 0.26 tolerated(0.14) possibly_damaging(0.783) TCGA-EB-A5UN-06 17 7484901 7484901 C T CD68 3'UTR 0.24 TCGA-EB-A5UN-06 17 75471618 75471618 G A SEPT9 Intron 0.23 TCGA-EB-A5UN-06 17 7736405 7736405 G A DNAH2 Missense_Mutation p.R4332Q 0.17 benign(0.094) TCGA-EB-A5UN-06 17 78195534 78195534 G A SLC26A11 Missense_Mutation p.G59S 0.18 deleterious(0.02) probably_damaging(0.91) TCGA-EB-A5UN-06 17 78272244 78272244 G A RNF213 Nonsense_Mutation p.W712* 0.24 TCGA-EB-A5UN-06 17 78403604 78403604 C T ENDOV Missense_Mutation p.P271S 0.15 tolerated_low_confidence(0.11) possibly_damaging(0.851) TCGA-EB-A5UN-06 17 79225101 79225101 G A SLC38A10 Intron 0.22 TCGA-EB-A5UN-06 17 79615126 79615126 C T TSPAN10 Silent p.N290N 0.22 TCGA-EB-A5UN-06 17 79615127 79615127 C T TSPAN10 Silent p.L291L 0.24 TCGA-EB-A5UN-06 17 8157353 8157353 T C PFAS Missense_Mutation p.L33P 0.37 deleterious(0.01) possibly_damaging(0.615) TCGA-EB-A5UN-06 18 2926801 2926801 C A LPIN2 Silent p.L571L 0.26 TCGA-EB-A5UN-06 18 29867603 29867603 G A GAREM Silent p.P319P 0.32 TCGA-EB-A5UN-06 18 29867604 29867604 G A GAREM Missense_Mutation p.P319L 0.31 tolerated(0.79) benign(0.005) TCGA-EB-A5UN-06 18 30092307 30092307 C T WBP11P1 RNA 0.26 TCGA-EB-A5UN-06 18 43217136 43217136 G A SLC14A2 Missense_Mutation p.E278K 0.26 tolerated(0.27) benign(0.044) TCGA-EB-A5UN-06 18 61228353 61228353 G A SERPINB12 Silent p.T140T 0.26 TCGA-EB-A5UN-06 18 66541973 66541973 C T CCDC102B Missense_Mutation p.S335F 0.28 tolerated(0.26) benign(0.037) TCGA-EB-A5UN-06 18 67231720 67231720 C T DOK6 Intron 0.23 TCGA-EB-A5UN-06 18 67365742 67365742 A T DOK6 Missense_Mutation p.N171I 0.33 deleterious(0) benign(0.31) TCGA-EB-A5UN-06 18 67365743 67365743 T A DOK6 Missense_Mutation p.N171K 0.36 deleterious(0.01) benign(0.13) TCGA-EB-A5UN-06 18 67425091 67425091 G A DOK6 Missense_Mutation p.E280K 0.28 deleterious(0.01) benign(0.023) TCGA-EB-A5UN-06 18 74091704 74091704 G A ZNF516 Missense_Mutation p.S789F 0.21 deleterious(0.04) possibly_damaging(0.627) TCGA-EB-A5UN-06 18 74649138 74649138 C T ZNF236 Missense_Mutation p.P1539S 0.31 tolerated(0.11) benign(0.009) TCGA-EB-A5UN-06 18 8244167 8244167 G A PTPRM Silent p.E804E 0.22 TCGA-EB-A5UN-06 18 8244168 8244168 G A PTPRM Missense_Mutation p.A805T 0.23 tolerated(0.11) benign(0.02) TCGA-EB-A5UN-06 19 10893729 10893729 C T DNM2 Missense_Mutation p.S261F 0.13 deleterious(0) probably_damaging(0.98) TCGA-EB-A5UN-06 19 12460491 12460491 A T ZNF442 3'UTR 0.26 TCGA-EB-A5UN-06 19 1270987 1270987 G A CIRBP Missense_Mutation p.E19K 0.24 tolerated(0.05) possibly_damaging(0.773) TCGA-EB-A5UN-06 19 14034382 14034382 C T CC2D1A Nonsense_Mutation p.Q596* 0.24 TCGA-EB-A5UN-06 19 14157323 14157323 C T IL27RA Missense_Mutation p.P345L 0.22 tolerated(0.07) benign(0.253) TCGA-EB-A5UN-06 19 14263205 14263205 G A LPHN1 Missense_Mutation p.R1194C 0.24 deleterious(0) probably_damaging(0.959) TCGA-EB-A5UN-06 19 1466297 1466297 T A APC2 Nonsense_Mutation p.Y999* 0.35 TCGA-EB-A5UN-06 19 14749053 14749053 T C EMR3 Missense_Mutation p.N450D 0.22 deleterious(0) possibly_damaging(0.855) TCGA-EB-A5UN-06 19 15073119 15073119 G A SLC1A6 Silent p.T210T 0.19 TCGA-EB-A5UN-06 19 15364508 15364508 G A BRD4 Intron 0.16 TCGA-EB-A5UN-06 19 15533976 15533976 T C WIZ Missense_Mutation p.I766V 0.21 deleterious(0) probably_damaging(0.982) TCGA-EB-A5UN-06 19 15728930 15728930 C T AD000091.2 5'Flank 0.17 TCGA-EB-A5UN-06 19 16666131 16666131 G A SLC35E1 Silent p.I278I 0.17 TCGA-EB-A5UN-06 19 17476536 17476536 G A PLVAP Silent p.I246I 0.22 TCGA-EB-A5UN-06 19 18378106 18378106 G A KIAA1683 Missense_Mutation p.L82F 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-EB-A5UN-06 19 19327829 19327829 G A NCAN Missense_Mutation p.E23K 0.22 tolerated(0.19) benign(0.003) TCGA-EB-A5UN-06 19 19339057 19339057 G A NCAN Silent p.L876L 0.16 TCGA-EB-A5UN-06 19 19748830 19748830 G A GMIP Missense_Mutation p.R276C 0.36 tolerated(0.09) possibly_damaging(0.779) TCGA-EB-A5UN-06 19 2413897 2413897 C A TMPRSS9 Missense_Mutation p.A451D 0.15 deleterious(0.04) benign(0.187) TCGA-EB-A5UN-06 19 2413898 2413898 C T TMPRSS9 Silent p.A451A 0.14 TCGA-EB-A5UN-06 19 34818913 34818913 G A KIAA0355 Missense_Mutation p.E321K 0.16 deleterious(0) probably_damaging(0.953) TCGA-EB-A5UN-06 19 37309964 37309964 C T ZNF790 Missense_Mutation p.G428R 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-EB-A5UN-06 19 37441472 37441472 C G ZNF568 Missense_Mutation p.P473A 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A5UN-06 19 38057121 38057121 C T ZNF571 Nonsense_Mutation p.W70* 0.22 TCGA-EB-A5UN-06 19 38945959 38945959 G A RYR1 Missense_Mutation p.E509K 0.18 possibly_damaging(0.809) TCGA-EB-A5UN-06 19 3937266 3937266 A T NMRK2 Missense_Mutation p.D49V 0.22 tolerated(0.14) benign(0.27) TCGA-EB-A5UN-06 19 3937267 3937267 C T NMRK2 Silent p.D49D 0.21 TCGA-EB-A5UN-06 19 40715072 40715072 G A MAP3K10 Missense_Mutation p.G500R 0.20 tolerated(0.36) possibly_damaging(0.771) TCGA-EB-A5UN-06 19 40889814 40889814 A G HIPK4 Missense_Mutation p.L233P 0.22 tolerated(0.08) benign(0.286) TCGA-EB-A5UN-06 19 40947918 40947918 C T SERTAD3 Missense_Mutation p.A24T 0.24 tolerated(0.79) benign(0.002) TCGA-EB-A5UN-06 19 42354506 42354506 G A DMRTC2 Intron 0.45 TCGA-EB-A5UN-06 19 43429979 43429979 G A PSG7 Missense_Mutation p.R397C 0.43 deleterious(0.01) possibly_damaging(0.828) TCGA-EB-A5UN-06 19 43762236 43762236 G A PSG9 Intron 0.36 TCGA-EB-A5UN-06 19 43965817 43965817 G A LYPD3 Missense_Mutation p.P243S 0.48 tolerated(0.13) benign(0.116) TCGA-EB-A5UN-06 19 4433433 4433433 C T CHAF1A Missense_Mutation p.P857L 0.19 tolerated(0.09) benign(0.062) TCGA-EB-A5UN-06 19 45515469 45515469 C T RELB Missense_Mutation p.R147C 0.38 deleterious(0) probably_damaging(0.98) TCGA-EB-A5UN-06 19 4685642 4685642 G A DPP9 Missense_Mutation p.P676L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 19 49547370 49547370 G C CGB5 5'UTR 0.35 TCGA-EB-A5UN-06 19 49797753 49797753 C T SLC6A16 Silent p.K429K 0.35 TCGA-EB-A5UN-06 19 50156434 50156434 G A SCAF1 Missense_Mutation p.G930R 0.62 unknown(0) TCGA-EB-A5UN-06 19 50918806 50918806 C T POLD1 Silent p.S892S 0.39 TCGA-EB-A5UN-06 19 51015409 51015409 G A ASPDH Silent p.F264F 0.44 TCGA-EB-A5UN-06 19 52439373 52439373 C T ZNF613 5'UTR 0.33 TCGA-EB-A5UN-06 19 53669055 53669055 C T ZNF665 Missense_Mutation p.G230R 0.39 tolerated(0.15) benign(0.254) TCGA-EB-A5UN-06 19 53669101 53669101 G A ZNF665 Silent p.A214A 0.46 TCGA-EB-A5UN-06 19 54722532 54722532 C G LILRB3 Missense_Mutation p.V508L 0.12 tolerated(0.15) benign(0.242) TCGA-EB-A5UN-06 19 54974109 54974109 G A LENG9 Nonsense_Mutation p.Q223* 0.41 TCGA-EB-A5UN-06 19 54974110 54974110 G A LENG9 Silent p.H222H 0.40 TCGA-EB-A5UN-06 19 55441955 55441955 G A NLRP7 Silent p.L908L 0.37 TCGA-EB-A5UN-06 19 55494714 55494714 C T NLRP2 Silent p.L550L 0.52 TCGA-EB-A5UN-06 19 56421973 56421973 G A NLRP13 Silent p.L746L 0.16 TCGA-EB-A5UN-06 19 57175232 57175232 G A ZNF835 Silent p.P445P 0.36 TCGA-EB-A5UN-06 19 5831649 5831649 C T FUT6 Silent p.K310K 0.06 TCGA-EB-A5UN-06 19 5844153 5844153 G A FUT3 Missense_Mutation p.T233I 0.19 tolerated(0.16) benign(0.086) TCGA-EB-A5UN-06 19 58564951 58564951 G A ZSCAN1 Silent p.R253R 0.42 TCGA-EB-A5UN-06 19 58928607 58928607 C T ZNF584 Missense_Mutation p.P241L 0.54 deleterious(0.01) probably_damaging(0.992) TCGA-EB-A5UN-06 19 6833197 6833197 C T VAV1 Missense_Mutation p.S504F 0.17 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UN-06 19 7677204 7677204 G A CAMSAP3 Missense_Mutation p.E636K 0.12 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UN-06 19 7809953 7809953 C T CD209 Nonsense_Mutation p.W258* 0.20 TCGA-EB-A5UN-06 19 7809954 7809954 C T CD209 Nonsense_Mutation p.W258* 0.21 TCGA-EB-A5UN-06 19 8196549 8196549 C T FBN3 Missense_Mutation p.G627S 0.20 deleterious(0.01) possibly_damaging(0.895) TCGA-EB-A5UN-06 19 855735 855735 C G ELANE Missense_Mutation p.L180V 0.19 tolerated(0.25) benign(0.118) TCGA-EB-A5UN-06 19 8564181 8564181 C T PRAM1 Missense_Mutation p.D171N 0.22 tolerated_low_confidence(0.22) probably_damaging(0.982) TCGA-EB-A5UN-06 19 8604875 8604875 C T MYO1F Missense_Mutation p.G550R 0.20 tolerated(0.2) benign(0.004) TCGA-EB-A5UN-06 19 9026203 9026203 G A MUC16 Silent p.V12261V 0.24 TCGA-EB-A5UN-06 19 9046630 9046630 C T MUC16 Silent p.G11667G 0.20 TCGA-EB-A5UN-06 19 9058049 9058049 G A MUC16 Silent p.I9799I 0.28 TCGA-EB-A5UN-06 19 9061992 9061992 G A MUC16 Missense_Mutation p.P8485L 0.17 unknown(0) TCGA-EB-A5UN-06 19 9068001 9068001 G A MUC16 Missense_Mutation p.S6482L 0.19 unknown(0) TCGA-EB-A5UN-06 19 9068306 9068306 G A MUC16 Silent p.S6380S 0.26 TCGA-EB-A5UN-06 19 9076401 9076401 C T MUC16 Missense_Mutation p.R3682K 0.22 unknown(0) TCGA-EB-A5UN-06 19 9085991 9085991 G A MUC16 Missense_Mutation p.P1942S 0.17 unknown(0) TCGA-EB-A5UN-06 19 9087601 9087601 G A MUC16 Missense_Mutation p.S1405L 0.19 unknown(0) TCGA-EB-A5UN-06 19 9089904 9089904 G A MUC16 Silent p.S637S 0.16 TCGA-EB-A5UN-06 19 9361911 9361911 C T OR7E24 Silent p.I64I 0.18 TCGA-EB-A5UN-06 1 101379246 101379246 A T SLC30A7 Missense_Mutation p.N180I 0.24 tolerated(0.09) possibly_damaging(0.552) TCGA-EB-A5UN-06 1 109840162 109840162 C T MYBPHL Silent p.G104G 0.21 TCGA-EB-A5UN-06 1 110169022 110169022 C T AMPD2 Silent p.V222V 0.17 TCGA-EB-A5UN-06 1 111060331 111060331 C T KCNA10 Missense_Mutation p.G360E 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 1 111060332 111060332 C T KCNA10 Missense_Mutation p.G360R 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 1 11184597 11184597 G A MTOR Missense_Mutation p.T2207I 0.28 deleterious(0) benign(0.095) TCGA-EB-A5UN-06 1 112043145 112043145 C T ADORA3 Intron 0.19 TCGA-EB-A5UN-06 1 11333957 11333957 C T UBIAD1 Silent p.D123D 0.27 TCGA-EB-A5UN-06 1 11333958 11333958 C T UBIAD1 Nonsense_Mutation p.R124* 0.28 TCGA-EB-A5UN-06 1 113459826 113459826 G A SLC16A1 Missense_Mutation p.P401L 0.18 deleterious(0.02) benign(0.429) TCGA-EB-A5UN-06 1 115829272 115829272 G A NGF Missense_Mutation p.R49C 0.13 deleterious(0.02) possibly_damaging(0.855) TCGA-EB-A5UN-06 1 116666736 116666736 C T MAB21L3 Missense_Mutation p.A80V 0.12 tolerated(0.1) benign(0.068) TCGA-EB-A5UN-06 1 116666737 116666737 C T MAB21L3 Silent p.A80A 0.12 TCGA-EB-A5UN-06 1 120345646 120345646 C T REG4 Intron 0.42 TCGA-EB-A5UN-06 1 12885201 12885201 G T PRAMEF11 Missense_Mutation p.L304I 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UN-06 1 12908029 12908029 G A HNRNPCL1 Silent p.S38S 0.08 TCGA-EB-A5UN-06 1 145115925 145115925 G A SEC22B RNA 0.05 TCGA-EB-A5UN-06 1 146658698 146658698 T G FMO5 Missense_Mutation p.L461F 0.19 tolerated(0.13) benign(0.021) TCGA-EB-A5UN-06 1 147380100 147380100 C T GJA8 Silent p.F6F 0.15 TCGA-EB-A5UN-06 1 149857799 149857799 C A HIST2H2BE 3'UTR 0.26 TCGA-EB-A5UN-06 1 150131313 150131313 C T PLEKHO1 Silent p.I275I 0.13 TCGA-EB-A5UN-06 1 150531497 150531497 G A ADAMTSL4 Silent p.G873G 0.17 TCGA-EB-A5UN-06 1 150795679 150795679 G A ARNT Missense_Mutation p.T462I 0.35 deleterious(0.03) possibly_damaging(0.8) TCGA-EB-A5UN-06 1 152188086 152188086 C T HRNR Missense_Mutation p.G2007R 0.09 unknown(0) TCGA-EB-A5UN-06 1 152192667 152192667 G A HRNR Nonsense_Mutation p.Q480* 0.16 TCGA-EB-A5UN-06 1 152192669 152192669 G A HRNR Missense_Mutation p.T479I 0.17 unknown(0) TCGA-EB-A5UN-06 1 152287816 152287816 C T FLG Silent p.K39K 0.15 TCGA-EB-A5UN-06 1 152325478 152325478 C T FLG2 Missense_Mutation p.R1595Q 0.30 benign(0.07) TCGA-EB-A5UN-06 1 155014007 155014007 G A DCST1 Silent p.R222R 0.38 TCGA-EB-A5UN-06 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EB-A5UN-06 1 155629362 155629362 G A YY1AP1 3'UTR 0.15 TCGA-EB-A5UN-06 1 155838526 155838526 G A SYT11 Missense_Mutation p.D269N 0.32 tolerated(0.09) possibly_damaging(0.735) TCGA-EB-A5UN-06 1 156011333 156011333 G A UBQLN4 Silent p.A532A 0.09 TCGA-EB-A5UN-06 1 1563124 1563124 G A MIB2 Missense_Mutation p.S647N 0.21 tolerated(0.95) benign(0.433) TCGA-EB-A5UN-06 1 1572332 1572332 G A CDK11B Missense_Mutation p.S579F 0.22 unknown(0) TCGA-EB-A5UN-06 1 157665255 157665255 C T FCRL3 Silent p.G425G 0.31 TCGA-EB-A5UN-06 1 157736713 157736713 C T FCRL2 Missense_Mutation p.G404E 0.15 tolerated(0.09) possibly_damaging(0.536) TCGA-EB-A5UN-06 1 158548901 158548901 C T OR10X1 Silent p.V263V 0.28 TCGA-EB-A5UN-06 1 158595957 158595957 G A SPTA1 Silent p.F1963F 0.13 TCGA-EB-A5UN-06 1 158645977 158645977 G A SPTA1 Missense_Mutation p.R356C 0.33 tolerated(0.06) benign(0.262) TCGA-EB-A5UN-06 1 158817575 158817575 G A MNDA Missense_Mutation p.D349N 0.38 deleterious(0.03) probably_damaging(0.913) TCGA-EB-A5UN-06 1 159283589 159283589 G A OR10J3 Silent p.P287P 0.13 TCGA-EB-A5UN-06 1 159923199 159923199 G A SLAMF9 Silent p.I97I 0.15 TCGA-EB-A5UN-06 1 16056393 16056393 C T PLEKHM2 Missense_Mutation p.A726V 0.22 tolerated(0.1) probably_damaging(0.947) TCGA-EB-A5UN-06 1 161595991 161595991 C T FCGR3B Missense_Mutation p.G210E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 1 161721744 161721744 C T DUSP12 Missense_Mutation p.R183C 0.29 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 1 16264444 16264444 C T SPEN Silent p.I3549I 0.17 TCGA-EB-A5UN-06 1 16388595 16388595 C T FAM131C Silent p.V89V 0.21 TCGA-EB-A5UN-06 1 164790855 164790855 G A PBX1 Missense_Mutation p.G398S 0.36 tolerated(0.51) benign(0.002) TCGA-EB-A5UN-06 1 16935121 16935121 G A NBPF1 5'UTR 0.07 TCGA-EB-A5UN-06 1 174781025 174781025 G A RABGAP1L Missense_Mutation p.R756K 0.38 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 1 175046525 175046525 C T TNN 5'UTR 0.34 TCGA-EB-A5UN-06 1 180974552 180974552 C T STX6 Nonsense_Mutation p.W28* 0.26 TCGA-EB-A5UN-06 1 192335065 192335065 C T RGS21 Silent p.F90F 0.18 TCGA-EB-A5UN-06 1 19500082 19500082 G A UBR4 Silent p.L1006L 0.22 TCGA-EB-A5UN-06 1 1956995 1956995 G A GABRD Silent p.R96R 0.21 TCGA-EB-A5UN-06 1 197008429 197008429 A - F13B 3'UTR 0.12 TCGA-EB-A5UN-06 1 197086955 197086955 C T ASPM Silent p.L1343L 0.21 TCGA-EB-A5UN-06 1 197396988 197396988 G A CRB1 Missense_Mutation p.G845S 0.18 tolerated(0.08) possibly_damaging(0.504) TCGA-EB-A5UN-06 1 197407819 197407819 G T CRB1 Intron 0.36 TCGA-EB-A5UN-06 1 197411159 197411159 A G CRB1 Intron 0.24 TCGA-EB-A5UN-06 1 200948729 200948729 G A KIF21B Missense_Mutation p.S1365F 0.15 deleterious(0) possibly_damaging(0.762) TCGA-EB-A5UN-06 1 203148994 203148994 G A CHI3L1 Silent p.F302F 0.46 TCGA-EB-A5UN-06 1 207642192 207642192 G A CR2 Missense_Mutation p.E228K 0.38 tolerated(0.84) benign(0.012) TCGA-EB-A5UN-06 1 210857182 210857182 G A KCNH1 Missense_Mutation p.S804F 0.11 deleterious(0.04) benign(0.07) TCGA-EB-A5UN-06 1 21890535 21890535 G A ALPL Silent p.G158G 0.15 TCGA-EB-A5UN-06 1 223178170 223178170 C T DISP1 Missense_Mutation p.P1144L 0.35 tolerated(1) possibly_damaging(0.542) TCGA-EB-A5UN-06 1 228492251 228492251 C T OBSCN Silent p.A4750A 0.19 TCGA-EB-A5UN-06 1 228553833 228553833 C T OBSCN Silent p.A7331A 0.20 TCGA-EB-A5UN-06 1 230493007 230493007 G A PGBD5 Missense_Mutation p.P62L 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EB-A5UN-06 1 23233374 23233374 G A EPHB2 Missense_Mutation p.G688D 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 1 232629367 232629367 G A SIPA1L2 Missense_Mutation p.P508L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 1 233297093 233297093 C T PCNXL2 Nonsense_Mutation p.W1097* 0.12 TCGA-EB-A5UN-06 1 23519645 23519645 G T HTR1D Nonsense_Mutation p.Y356* 0.20 TCGA-EB-A5UN-06 1 235292166 235292166 C T TOMM20 5'UTR 0.42 TCGA-EB-A5UN-06 1 236766515 236766515 A C HEATR1 Missense_Mutation p.S102A 0.30 deleterious(0.03) possibly_damaging(0.844) TCGA-EB-A5UN-06 1 23779235 23779235 G A ASAP3 Silent p.F126F 0.28 TCGA-EB-A5UN-06 1 240256817 240256817 C T FMN2 Missense_Mutation p.R470W 0.15 unknown(0) TCGA-EB-A5UN-06 1 240256871 240256871 G A FMN2 Missense_Mutation p.E488K 0.25 unknown(0) TCGA-EB-A5UN-06 1 240371788 240371788 C T FMN2 Missense_Mutation p.P1226S 0.13 benign(0.005) TCGA-EB-A5UN-06 1 247464290 247464290 T C ZNF496 Missense_Mutation p.E432G 0.12 deleterious(0) possibly_damaging(0.522) TCGA-EB-A5UN-06 1 248684970 248684970 C T OR2G6 Missense_Mutation p.S8F 0.15 tolerated(0.3) benign(0.013) TCGA-EB-A5UN-06 1 248685429 248685429 C T OR2G6 Missense_Mutation p.S161F 0.14 tolerated(0.07) possibly_damaging(0.752) TCGA-EB-A5UN-06 1 248757031 248757031 G A OR2T10 Silent p.F13F 0.18 TCGA-EB-A5UN-06 1 249144584 249144587 CTGT - ZNF692 Frame_Shift_Del p.D466Vfs*15 0.16 TCGA-EB-A5UN-06 1 26582163 26582163 G A CEP85 Missense_Mutation p.R237Q 0.09 tolerated(0.72) benign(0.013) TCGA-EB-A5UN-06 1 27427696 27427696 G A SLC9A1 Missense_Mutation p.S703L 0.18 deleterious(0.01) benign(0.344) TCGA-EB-A5UN-06 1 29064829 29064829 C T YTHDF2 Silent p.Y37Y 0.23 TCGA-EB-A5UN-06 1 31212743 31212743 G A LAPTM5 Silent p.I100I 0.17 TCGA-EB-A5UN-06 1 32636331 32636331 C A KPNA6 Missense_Mutation p.Q483K 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 1 34174908 34174908 C T CSMD2 Intron 0.27 TCGA-EB-A5UN-06 1 34684425 34684425 G A C1orf94 3'UTR 0.20 TCGA-EB-A5UN-06 1 35227399 35227399 G A GJB4 Missense_Mutation p.E182K 0.20 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UN-06 1 35259868 35259868 G A GJA4 Silent p.S18S 0.24 TCGA-EB-A5UN-06 1 36380973 36380973 C T AGO1 Missense_Mutation p.P620S 0.20 deleterious(0.04) probably_damaging(1) TCGA-EB-A5UN-06 1 36492878 36492878 C T AGO3 Missense_Mutation p.P524S 0.19 deleterious(0) possibly_damaging(0.881) TCGA-EB-A5UN-06 1 36564320 36564320 G A COL8A2 Missense_Mutation p.P321L 0.08 deleterious(0.03) unknown(0) TCGA-EB-A5UN-06 1 38184467 38184467 G A EPHA10 Silent p.D926D 0.15 TCGA-EB-A5UN-06 1 38446274 38446274 G A SF3A3 Missense_Mutation p.T225I 0.13 tolerated(0.17) benign(0.005) TCGA-EB-A5UN-06 1 40945130 40945130 G A ZFP69 Missense_Mutation p.E33K 0.20 tolerated(0.05) benign(0.025) TCGA-EB-A5UN-06 1 43317339 43317339 C T ZNF691 Missense_Mutation p.S268F 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 1 44128686 44128686 C T KDM4A Missense_Mutation p.S184F 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 1 47279899 47279899 G A CYP4B1 Missense_Mutation p.R265Q 0.18 deleterious(0) probably_damaging(0.945) TCGA-EB-A5UN-06 1 47515682 47515682 G A CYP4X1 Missense_Mutation p.G456R 0.23 deleterious(0) possibly_damaging(0.838) TCGA-EB-A5UN-06 1 47534359 47534359 C T CYP4Z1 Silent p.P81P 0.20 TCGA-EB-A5UN-06 1 47611995 47611995 G A CYP4A22 Intron 0.25 TCGA-EB-A5UN-06 1 6214931 6214931 C T CHD5 Silent p.K178K 0.18 TCGA-EB-A5UN-06 1 64644345 64644345 C T ROR1 Missense_Mutation p.S874L 0.15 deleterious_low_confidence(0.03) benign(0.084) TCGA-EB-A5UN-06 1 66087096 66087096 C T LEPR Missense_Mutation p.S851F 0.24 tolerated(0.13) benign(0.167) TCGA-EB-A5UN-06 1 66713311 66713311 G A PDE4B Silent p.S150S 0.18 TCGA-EB-A5UN-06 1 70736566 70736566 G A ANKRD13C Missense_Mutation p.L490F 0.17 tolerated(0.06) probably_damaging(0.961) TCGA-EB-A5UN-06 1 79411970 79411970 G A ELTD1 Missense_Mutation p.T105I 0.24 tolerated_low_confidence(0.05) probably_damaging(0.976) TCGA-EB-A5UN-06 1 85331815 85331815 G A LPAR3 5'UTR 0.17 TCGA-EB-A5UN-06 1 86048681 86048681 C T CYR61 Missense_Mutation p.P368S 0.16 tolerated(0.25) benign(0.231) TCGA-EB-A5UN-06 1 87102564 87102564 C T RP4-651E10.4 Intron 0.15 TCGA-EB-A5UN-06 1 92979427 92979427 G A EVI5 Missense_Mutation p.S740F 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EB-A5UN-06 20 13090785 13090785 A G SPTLC3 Missense_Mutation p.R285G 0.22 deleterious(0) probably_damaging(0.932) TCGA-EB-A5UN-06 20 1517819 1517819 G C SIRPD Missense_Mutation p.R187G 0.20 unknown(0) TCGA-EB-A5UN-06 20 15210698 15210698 C T MACROD2 Silent p.I177I 0.21 TCGA-EB-A5UN-06 20 20246169 20246169 C T C20orf26 Intron 0.25 TCGA-EB-A5UN-06 20 23066273 23066273 C T CD93 Missense_Mutation p.G186D 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 20 30408203 30408203 G A MYLK2 Silent p.K109K 0.19 TCGA-EB-A5UN-06 20 30785018 30785018 G A PLAGL2 Missense_Mutation p.S243L 0.12 tolerated(0.05) probably_damaging(0.921) TCGA-EB-A5UN-06 20 34220242 34220242 C G CPNE1 Silent p.G130G 0.29 TCGA-EB-A5UN-06 20 34817259 34817259 C T EPB41L1 Silent p.S881S 0.15 TCGA-EB-A5UN-06 20 36572546 36572546 C T VSTM2L Missense_Mutation p.S169F 0.22 deleterious(0.01) possibly_damaging(0.596) TCGA-EB-A5UN-06 20 39832378 39832378 G A ZHX3 Silent p.T393T 0.16 TCGA-EB-A5UN-06 20 41419837 41419837 G A PTPRT Nonsense_Mutation p.Q162* 0.20 TCGA-EB-A5UN-06 20 42089159 42089159 C T SRSF6 Nonsense_Mutation p.R199* 0.14 TCGA-EB-A5UN-06 20 44520618 44520618 C T CTSA Silent p.P104P 0.24 TCGA-EB-A5UN-06 20 45224911 45224911 G A SLC13A3 Missense_Mutation p.R227C 0.19 deleterious(0.01) benign(0.082) TCGA-EB-A5UN-06 20 47741137 47741137 G A STAU1 Intron 0.17 TCGA-EB-A5UN-06 20 47863846 47863846 G A ZNFX1 Silent p.A1905A 0.21 TCGA-EB-A5UN-06 20 5282980 5282980 G A PROKR2 Silent p.C287C 0.25 TCGA-EB-A5UN-06 20 53208265 53208265 G A DOK5 Missense_Mutation p.V174I 0.17 tolerated(0.1) benign(0.006) TCGA-EB-A5UN-06 20 5528247 5528247 G A GPCPD1 3'UTR 0.15 TCGA-EB-A5UN-06 20 62599268 62599268 G A ZNF512B Silent p.L12L 0.18 TCGA-EB-A5UN-06 20 9401956 9401956 C T PLCB4 Nonsense_Mutation p.Q711* 0.20 TCGA-EB-A5UN-06 20 9402088 9402088 G A PLCB4 Missense_Mutation p.E755K 0.23 deleterious(0) probably_damaging(0.997) TCGA-EB-A5UN-06 21 11038949 11038949 G A BAGE2 RNA 0.05 TCGA-EB-A5UN-06 21 27284212 27284212 G A APP Missense_Mutation p.P584S 0.30 tolerated(0.8) benign(0.05) TCGA-EB-A5UN-06 21 31768820 31768820 C T KRTAP13-1 Missense_Mutation p.S139F 0.17 tolerated(0.08) benign(0.119) TCGA-EB-A5UN-06 21 34660440 34660440 C T IL10RB Silent p.I226I 0.21 TCGA-EB-A5UN-06 21 34889735 34889735 C T GART Missense_Mutation p.R628K 0.19 deleterious(0) possibly_damaging(0.878) TCGA-EB-A5UN-06 21 37612221 37612221 C T DOPEY2 Missense_Mutation p.S1012F 0.21 deleterious(0) possibly_damaging(0.863) TCGA-EB-A5UN-06 21 41561106 41561106 C T DSCAM Missense_Mutation p.E806K 0.24 tolerated(0.23) benign(0.044) TCGA-EB-A5UN-06 21 47821564 47821564 G A PCNT Missense_Mutation p.G1631S 0.17 probably_damaging(0.934) TCGA-EB-A5UN-06 22 17472821 17472821 C T GAB4 Missense_Mutation p.M140I 0.17 deleterious(0) possibly_damaging(0.537) TCGA-EB-A5UN-06 22 22314047 22314047 G A TOP3B Silent p.A572A 0.17 TCGA-EB-A5UN-06 22 25623925 25623925 C T CRYBB2 Silent p.S93S 0.21 TCGA-EB-A5UN-06 22 26083537 26083537 G A ADRBK2 Missense_Mutation p.G287D 0.16 deleterious(0) probably_damaging(0.983) TCGA-EB-A5UN-06 22 26902769 26902769 T C TFIP11 Missense_Mutation p.K112R 0.24 tolerated(0.6) benign(0.009) TCGA-EB-A5UN-06 22 31998230 31998230 G A SFI1 Nonsense_Mutation p.W526* 0.20 TCGA-EB-A5UN-06 22 32495248 32495248 C T SLC5A1 Silent p.F453F 0.20 TCGA-EB-A5UN-06 22 32914104 32914104 G A SYN3 Silent p.P512P 0.18 TCGA-EB-A5UN-06 22 36908515 36908515 G A EIF3D Silent p.L447L 0.20 TCGA-EB-A5UN-06 22 37334044 37334044 C T CSF2RB Missense_Mutation p.P732S 0.22 tolerated(0.14) benign(0.391) TCGA-EB-A5UN-06 22 37524587 37524587 C T IL2RB Missense_Mutation p.G402E 0.26 tolerated(0.08) benign(0.095) TCGA-EB-A5UN-06 22 41545778 41545778 G A EP300 Missense_Mutation p.S798N 0.25 unknown(0) TCGA-EB-A5UN-06 22 41895783 41895783 C A ACO2 Silent p.A30A 0.22 TCGA-EB-A5UN-06 22 42032642 42032642 C T XRCC6 Missense_Mutation p.L153F 0.18 deleterious(0.01) benign(0.386) TCGA-EB-A5UN-06 22 43230294 43230294 G A ARFGAP3 Missense_Mutation p.P144L 0.20 deleterious(0.02) benign(0.102) TCGA-EB-A5UN-06 2 103128688 103128688 C T SLC9A4 Silent p.I505I 0.16 TCGA-EB-A5UN-06 2 103281723 103281723 C T SLC9A2 Silent p.I306I 0.17 TCGA-EB-A5UN-06 2 105654530 105654530 C T MRPS9 5'UTR 0.23 TCGA-EB-A5UN-06 2 105897098 105897098 G A TGFBRAP1 Missense_Mutation p.P402S 0.15 deleterious(0) probably_damaging(0.992) TCGA-EB-A5UN-06 2 105897099 105897099 G A TGFBRAP1 Silent p.H401H 0.15 TCGA-EB-A5UN-06 2 107459983 107459983 G A ST6GAL2 Missense_Mutation p.P151S 0.14 benign(0.035) TCGA-EB-A5UN-06 2 108489172 108489172 G A RGPD4 Missense_Mutation p.G1571E 0.19 deleterious(0.03) probably_damaging(1) TCGA-EB-A5UN-06 2 11273482 11273482 G A C2orf50 Missense_Mutation p.G8R 0.16 tolerated(0.07) benign(0.04) TCGA-EB-A5UN-06 2 112944728 112944728 C T FBLN7 Missense_Mutation p.P322L 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 2 113830325 113830325 C T IL1F10 Missense_Mutation p.L4F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A5UN-06 2 119732105 119732105 G A MARCO Missense_Mutation p.G193R 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 2 120834608 120834608 C T EPB41L5 Silent p.F189F 0.23 TCGA-EB-A5UN-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 2 128528457 128528457 T G WDR33 Silent p.A33A 0.22 TCGA-EB-A5UN-06 2 130951677 130951677 C T TUBA3E Silent p.G246G 0.07 TCGA-EB-A5UN-06 2 132021752 132021752 C T POTEE Silent p.I908I 0.09 TCGA-EB-A5UN-06 2 132238004 132238004 G A TUBA3D Silent p.G246G 0.14 TCGA-EB-A5UN-06 2 132558489 132558489 C T C2orf27B Missense_Mutation p.G8R 0.22 deleterious_low_confidence(0) unknown(0) TCGA-EB-A5UN-06 2 141751568 141751568 G A LRP1B Silent p.N880N 0.22 TCGA-EB-A5UN-06 2 157414076 157414076 C T GPD2 Silent p.L383L 0.11 TCGA-EB-A5UN-06 2 158300366 158300366 C T CYTIP Missense_Mutation p.R56Q 0.20 tolerated(0.06) possibly_damaging(0.836) TCGA-EB-A5UN-06 2 160031622 160031622 C T TANC1 Silent p.L554L 0.21 TCGA-EB-A5UN-06 2 160239206 160239206 C T BAZ2B Missense_Mutation p.R1290Q 0.18 possibly_damaging(0.884) TCGA-EB-A5UN-06 2 162661030 162661030 C G SLC4A10 Missense_Mutation p.R68G 0.18 tolerated(0.43) benign(0.239) TCGA-EB-A5UN-06 2 167128972 167128972 G A SCN9A Silent p.S1085S 0.19 TCGA-EB-A5UN-06 2 167149862 167149862 G A SCN9A Missense_Mutation p.T329I 0.21 tolerated(0.81) benign(0.003) TCGA-EB-A5UN-06 2 167289094 167289094 C T SCN7A Missense_Mutation p.D776N 0.28 tolerated(0.14) benign(0.006) TCGA-EB-A5UN-06 2 168105419 168105419 G A XIRP2 Missense_Mutation p.G2506E 0.18 benign(0.001) TCGA-EB-A5UN-06 2 170058237 170058237 C T LRP2 Missense_Mutation p.E2785K 0.16 probably_damaging(0.997) TCGA-EB-A5UN-06 2 170425747 170425747 G A FASTKD1 Silent p.A131A 0.20 TCGA-EB-A5UN-06 2 178385996 178385996 G A AGPS Splice_Site p.X566_splice 0.17 TCGA-EB-A5UN-06 2 178385997 178385997 G A AGPS Silent p.R566R 0.17 TCGA-EB-A5UN-06 2 179418389 179418389 C T TTN Nonsense_Mutation p.W29781* 0.10 TCGA-EB-A5UN-06 2 179426465 179426465 C T TTN Missense_Mutation p.E28132K 0.11 TCGA-EB-A5UN-06 2 179432170 179432170 C A TTN Missense_Mutation p.G26230V 0.23 TCGA-EB-A5UN-06 2 179432171 179432171 C A TTN Nonsense_Mutation p.G26230* 0.23 TCGA-EB-A5UN-06 2 179472625 179472625 G A TTN Missense_Mutation p.T17630I 0.18 TCGA-EB-A5UN-06 2 179494158 179494158 C T TTN Missense_Mutation p.G14765D 0.14 TCGA-EB-A5UN-06 2 180819009 180819009 G A CWC22 Missense_Mutation p.R538C 0.17 deleterious(0) probably_damaging(0.985) TCGA-EB-A5UN-06 2 180846525 180846525 G C CWC22 Missense_Mutation p.P136A 0.18 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 2 183050710 183050710 G A PDE1A Silent p.S491S 0.31 TCGA-EB-A5UN-06 2 188245205 188245205 C T CALCRL Missense_Mutation p.E133K 0.32 tolerated(0.05) benign(0.012) TCGA-EB-A5UN-06 2 190922010 190922010 C T MSTN Missense_Mutation p.V368I 0.13 deleterious(0.01) possibly_damaging(0.702) TCGA-EB-A5UN-06 2 191301950 191301950 G A MFSD6 Missense_Mutation p.D399N 0.20 tolerated(0.28) benign(0.003) TCGA-EB-A5UN-06 2 196729055 196729055 G A DNAH7 Missense_Mutation p.R2442C 0.23 deleterious(0) possibly_damaging(0.528) TCGA-EB-A5UN-06 2 202334695 202334695 C T STRADB Missense_Mutation p.S38F 0.25 deleterious(0.03) benign(0.005) TCGA-EB-A5UN-06 2 207174302 207174302 C T ZDBF2 Missense_Mutation p.H1684Y 0.11 deleterious(0.04) benign(0.002) TCGA-EB-A5UN-06 2 207559598 207559598 G A DYTN Silent p.Y241Y 0.18 TCGA-EB-A5UN-06 2 207572096 207572096 C T DYTN Missense_Mutation p.E76K 0.15 tolerated(0.1) benign(0.063) TCGA-EB-A5UN-06 2 211082779 211082779 C T ACADL Missense_Mutation p.G94E 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 2 211421375 211421375 C T CPS1 Intron 0.50 TCGA-EB-A5UN-06 2 21230306 21230306 G A APOB Missense_Mutation p.P3145L 0.18 benign(0.042) TCGA-EB-A5UN-06 2 212483982 212483982 C T ERBB4 Missense_Mutation p.G741R 0.10 deleterious(0.02) probably_damaging(0.937) TCGA-EB-A5UN-06 2 215843757 215843757 T C ABCA12 Missense_Mutation p.N1583S 0.13 tolerated(0.38) benign(0.005) TCGA-EB-A5UN-06 2 218939975 218939975 G A RUFY4 Missense_Mutation p.E274K 0.25 tolerated(0.19) benign(0.017) TCGA-EB-A5UN-06 2 219029299 219029299 G A CXCR1 Silent p.I212I 0.20 TCGA-EB-A5UN-06 2 219118746 219118746 C T ARPC2 3'UTR 0.27 TCGA-EB-A5UN-06 2 219561253 219561253 C T STK36 Missense_Mutation p.R839W 0.24 tolerated(0.19) possibly_damaging(0.677) TCGA-EB-A5UN-06 2 220090285 220090285 G A ATG9A Silent p.L74L 0.17 TCGA-EB-A5UN-06 2 220396842 220396842 G A ASIC4 Missense_Mutation p.E410K 0.15 tolerated(0.15) benign(0.179) TCGA-EB-A5UN-06 2 228399626 228399626 C T AGFG1 Missense_Mutation p.P388S 0.13 deleterious(0.01) possibly_damaging(0.844) TCGA-EB-A5UN-06 2 228564173 228564173 T C SLC19A3 Silent p.Q86Q 0.25 TCGA-EB-A5UN-06 2 230911199 230911199 C T SLC16A14 Missense_Mutation p.G215S 0.27 tolerated(1) benign(0.006) TCGA-EB-A5UN-06 2 231108486 231108486 G T SP140 Silent p.V177V 0.24 TCGA-EB-A5UN-06 2 231368904 231368904 C T SP100 Missense_Mutation p.P590L 0.24 deleterious(0) benign(0.139) TCGA-EB-A5UN-06 2 232143165 232143165 C T ARMC9 Silent p.N515N 0.20 TCGA-EB-A5UN-06 2 232321181 232321181 G A NCL Intron 0.16 TCGA-EB-A5UN-06 2 232656505 232656505 C T COPS7B Silent p.Y75Y 0.16 TCGA-EB-A5UN-06 2 233393058 233393058 C T CHRND Silent p.L110L 0.15 TCGA-EB-A5UN-06 2 233393059 233393059 C T CHRND Missense_Mutation p.P111S 0.15 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UN-06 2 234580994 234580994 G A UGT1A9 Silent p.K138K 0.10 TCGA-EB-A5UN-06 2 24929947 24929947 C T NCOA1 Silent p.I536I 0.16 TCGA-EB-A5UN-06 2 27745336 27745336 G A GCKR Missense_Mutation p.G528R 0.18 deleterious(0) possibly_damaging(0.807) TCGA-EB-A5UN-06 2 27804281 27804281 C T C2orf16 Silent p.H1614H 0.17 TCGA-EB-A5UN-06 2 27911627 27911627 C T SLC4A1AP Missense_Mutation p.P755L 0.12 deleterious(0.05) benign(0.007) TCGA-EB-A5UN-06 2 28752264 28752264 G A PLB1 Missense_Mutation p.D136N 0.07 tolerated(0.52) benign(0.001) TCGA-EB-A5UN-06 2 30457355 30457355 G A LBH Silent p.K37K 0.27 TCGA-EB-A5UN-06 2 31165103 31165103 C T GALNT14 Missense_Mutation p.D304N 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-EB-A5UN-06 2 32117132 32117132 C - MEMO1 Frame_Shift_Del p.G170Efs*8 0.18 TCGA-EB-A5UN-06 2 32475885 32475885 C T NLRC4 Missense_Mutation p.G350S 0.26 deleterious(0.02) probably_damaging(1) TCGA-EB-A5UN-06 2 46986117 46986117 C T SOCS5 Nonsense_Mutation p.Q150* 0.18 TCGA-EB-A5UN-06 2 48874108 48874108 G A STON1-GTF2A1L Missense_Mutation p.R1006K 0.24 tolerated(0.86) benign(0.015) TCGA-EB-A5UN-06 2 54128674 54128674 C T PSME4 Missense_Mutation p.G1033E 0.23 deleterious(0) benign(0.318) TCGA-EB-A5UN-06 2 55467224 55467224 A G MTIF2 Missense_Mutation p.I598T 0.30 deleterious(0) possibly_damaging(0.882) TCGA-EB-A5UN-06 2 56210147 56210147 G A MIR217 RNA 0.16 TCGA-EB-A5UN-06 2 62132845 62132845 C A COMMD1 Missense_Mutation p.P11H 0.25 tolerated(0.06) possibly_damaging(0.678) TCGA-EB-A5UN-06 2 64147048 64147048 C A VPS54 Silent p.G711G 0.30 TCGA-EB-A5UN-06 2 73680996 73680996 C T ALMS1 Missense_Mutation p.P2447S 0.14 probably_damaging(0.99) TCGA-EB-A5UN-06 2 75100425 75100425 A T HK2 Missense_Mutation p.K173M 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 2 75100426 75100426 G A HK2 Silent p.K173K 0.24 TCGA-EB-A5UN-06 2 95601066 95601066 C T AC097374.2 RNA 0.15 TCGA-EB-A5UN-06 3 102183090 102183090 C T ZPLD1 Silent p.F268F 0.22 TCGA-EB-A5UN-06 3 10391870 10391870 C T ATP2B2 Missense_Mutation p.R777Q 0.14 tolerated(0.28) possibly_damaging(0.821) TCGA-EB-A5UN-06 3 108163629 108163629 C T MYH15 Missense_Mutation p.G858E 0.22 tolerated(1) benign(0.197) TCGA-EB-A5UN-06 3 113655146 113655146 A T GRAMD1C Missense_Mutation p.N497I 0.23 deleterious(0.02) possibly_damaging(0.655) TCGA-EB-A5UN-06 3 113858523 113858523 T G DRD3 Missense_Mutation p.I183L 0.21 tolerated(0.17) possibly_damaging(0.734) TCGA-EB-A5UN-06 3 121740937 121740937 C T ILDR1 5'UTR 0.31 TCGA-EB-A5UN-06 3 122004138 122004138 G A CASR 3'UTR 0.19 TCGA-EB-A5UN-06 3 12447430 12447430 G A PPARG Silent p.A223A 0.18 TCGA-EB-A5UN-06 3 127336856 127336856 C T MCM2 Missense_Mutation p.L649F 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 3 130715580 130715580 C T ATP2C1 Missense_Mutation p.P762L 0.23 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UN-06 3 133098794 133098794 C T TMEM108 Missense_Mutation p.P80L 0.24 deleterious_low_confidence(0) benign(0.01) TCGA-EB-A5UN-06 3 133478150 133478150 G A TF Missense_Mutation p.E394K 0.28 tolerated(0.09) probably_damaging(0.996) TCGA-EB-A5UN-06 3 134322355 134322355 C T KY 3'UTR 0.16 TCGA-EB-A5UN-06 3 140407065 140407065 C G TRIM42 Missense_Mutation p.T514R 0.24 tolerated(0.08) benign(0.003) TCGA-EB-A5UN-06 3 148871434 148871434 C T HPS3 Missense_Mutation p.L467F 0.23 tolerated(0.05) probably_damaging(0.986) TCGA-EB-A5UN-06 3 149039266 149039266 C T TM4SF18 Silent p.%3D 0.32 TCGA-EB-A5UN-06 3 154024015 154024015 G A DHX36 Missense_Mutation p.R295C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 3 160786633 160786633 C T PPM1L Silent p.V257V 0.29 TCGA-EB-A5UN-06 3 16217018 16217018 C T GALNT15 Silent p.I120I 0.17 TCGA-EB-A5UN-06 3 164785182 164785182 A G SI Missense_Mutation p.V194A 0.22 deleterious(0.02) benign(0.033) TCGA-EB-A5UN-06 3 164907233 164907233 G A SLITRK3 Silent p.F462F 0.19 TCGA-EB-A5UN-06 3 169555273 169555273 G A LRRIQ4 Missense_Mutation p.A513T 0.13 deleterious(0.02) possibly_damaging(0.743) TCGA-EB-A5UN-06 3 169574594 169574594 C T LRRC31 Missense_Mutation p.G185E 0.19 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 3 170828506 170828506 G A TNIK Nonsense_Mutation p.R761* 0.21 TCGA-EB-A5UN-06 3 179605503 179605503 T C PEX5L Missense_Mutation p.K90E 0.20 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-EB-A5UN-06 3 184090582 184090582 A T THPO Missense_Mutation p.F261I 0.24 tolerated_low_confidence(0.06) benign(0.026) TCGA-EB-A5UN-06 3 184090583 184090583 G A THPO Silent p.L260L 0.24 TCGA-EB-A5UN-06 3 184100246 184100246 G A CHRD Missense_Mutation p.A257T 0.26 tolerated(0.57) possibly_damaging(0.893) TCGA-EB-A5UN-06 3 184298376 184298376 C T EPHB3 Missense_Mutation p.P787S 0.20 tolerated(0.33) benign(0.001) TCGA-EB-A5UN-06 3 193188721 193188721 C T ATP13A4 Silent p.G290G 0.25 TCGA-EB-A5UN-06 3 193188722 193188722 C A ATP13A4 Missense_Mutation p.G290V 0.24 tolerated(0.09) probably_damaging(0.988) TCGA-EB-A5UN-06 3 194408835 194408835 C T FAM43A 3'UTR 0.25 TCGA-EB-A5UN-06 3 196311241 196311241 G A FBXO45 3'UTR 0.26 TCGA-EB-A5UN-06 3 196539713 196539713 T A PAK2 Missense_Mutation p.F309Y 0.32 tolerated(1) benign(0.019) TCGA-EB-A5UN-06 3 21706467 21706467 G A ZNF385D Missense_Mutation p.P26S 0.26 tolerated(0.1) benign(0.098) TCGA-EB-A5UN-06 3 32995255 32995255 C T CCR4 Missense_Mutation p.S114F 0.19 deleterious(0) possibly_damaging(0.851) TCGA-EB-A5UN-06 3 36873796 36873796 G A TRANK1 Silent p.Y2382Y 0.15 TCGA-EB-A5UN-06 3 37458885 37458885 G A C3orf35 Missense_Mutation p.G43E 0.16 deleterious_low_confidence(0.03) benign(0) TCGA-EB-A5UN-06 3 38655261 38655261 C T SCN5A Intron 0.22 TCGA-EB-A5UN-06 3 44843419 44843419 C T KIF15 Missense_Mutation p.R488C 0.19 tolerated(0.05) benign(0.051) TCGA-EB-A5UN-06 3 45153728 45153728 C T CDCP1 Missense_Mutation p.D168N 0.16 tolerated(0.19) benign(0.023) TCGA-EB-A5UN-06 3 46008477 46008477 C T FYCO1 Silent p.G783G 0.25 TCGA-EB-A5UN-06 3 47045759 47045759 T C NBEAL2 Missense_Mutation p.I2025T 0.18 tolerated(0.33) benign(0) TCGA-EB-A5UN-06 3 47894815 47894815 G A MAP4 Silent p.L1097L 0.14 TCGA-EB-A5UN-06 3 4856821 4856821 G T ITPR1 Missense_Mutation p.V2581F 0.24 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 3 50402202 50402202 G A CACNA2D2 Silent p.F1116F 0.17 TCGA-EB-A5UN-06 3 51395391 51395391 G T DOCK3 Splice_Site p.X1590_splice 0.12 TCGA-EB-A5UN-06 3 51895873 51895873 G A IQCF2 Splice_Site p.X7_splice 0.21 TCGA-EB-A5UN-06 3 52558578 52558578 G A NT5DC2 Missense_Mutation p.P528S 0.19 tolerated(0.09) probably_damaging(1) TCGA-EB-A5UN-06 3 52610608 52610609 - T PBRM1 Frame_Shift_Ins p.E1189Rfs*6 0.12 TCGA-EB-A5UN-06 3 52675975 52675975 A T PBRM1 Nonsense_Mutation p.L361* 0.19 TCGA-EB-A5UN-06 3 52741807 52741807 G A SPCS1 Silent p.K163K 0.20 TCGA-EB-A5UN-06 3 54798353 54798353 G A CACNA2D3 Nonsense_Mutation p.W452* 0.20 TCGA-EB-A5UN-06 3 54952866 54952866 C T LRTM1 Missense_Mutation p.D220N 0.32 deleterious(0.05) benign(0.059) TCGA-EB-A5UN-06 3 69111322 69111322 A G UBA3 Silent p.F234F 0.23 TCGA-EB-A5UN-06 3 69245468 69245468 A T FRMD4B Missense_Mutation p.L391Q 0.21 deleterious(0.01) benign(0.406) TCGA-EB-A5UN-06 3 8983349 8983349 A T RAD18 Missense_Mutation p.F136I 0.14 deleterious(0) benign(0.313) TCGA-EB-A5UN-06 3 9094734 9094734 C T SRGAP3 Missense_Mutation p.E434K 0.19 deleterious(0) probably_damaging(0.987) TCGA-EB-A5UN-06 3 93780185 93780185 G A DHFRL1 Silent p.T57T 0.21 TCGA-EB-A5UN-06 3 96963003 96963003 C A EPHA6 Missense_Mutation p.S493Y 0.33 tolerated(0.45) probably_damaging(0.929) TCGA-EB-A5UN-06 3 9782566 9782566 C T BRPF1 Missense_Mutation p.P555S 0.16 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 3 97984040 97984040 G A OR5H6 Missense_Mutation p.M304I 0.19 tolerated(0.58) benign(0) TCGA-EB-A5UN-06 3 98241566 98241566 G A CLDND1 Intron 0.38 TCGA-EB-A5UN-06 4 100787272 100787272 G A DAPP1 Nonsense_Mutation p.W256* 0.20 TCGA-EB-A5UN-06 4 123377646 123377646 G A IL2 5'UTR 0.39 TCGA-EB-A5UN-06 4 129764135 129764135 C T JADE1 Missense_Mutation p.S27F 0.17 deleterious(0) probably_damaging(0.972) TCGA-EB-A5UN-06 4 140640579 140640579 G A MAML3 Silent p.F1105F 0.16 TCGA-EB-A5UN-06 4 144801563 144801563 C T GYPE Splice_Site p.X46_splice 0.16 TCGA-EB-A5UN-06 4 151682955 151682955 G A LRBA Silent p.I1875I 0.18 TCGA-EB-A5UN-06 4 152096573 152096573 G A SH3D19 5'UTR 0.16 TCGA-EB-A5UN-06 4 153691684 153691684 G A TIGD4 Missense_Mutation p.P158L 0.36 tolerated(0.09) benign(0.08) TCGA-EB-A5UN-06 4 153691685 153691685 G A TIGD4 Missense_Mutation p.P158S 0.37 tolerated(0.53) benign(0.08) TCGA-EB-A5UN-06 4 153896248 153896248 C T FHDC1 Missense_Mutation p.P602L 0.19 tolerated(0.29) benign(0.032) TCGA-EB-A5UN-06 4 155507313 155507313 C T FGA Missense_Mutation p.G423E 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-EB-A5UN-06 4 15841722 15841722 G A CD38 Missense_Mutation p.G245S 0.19 tolerated(0.07) benign(0.005) TCGA-EB-A5UN-06 4 159790331 159790331 C T FNIP2 Missense_Mutation p.P848L 0.27 deleterious(0.04) benign(0.02) TCGA-EB-A5UN-06 4 162307109 162307109 C T FSTL5 Missense_Mutation p.M778I 0.22 tolerated(0.1) benign(0) TCGA-EB-A5UN-06 4 162402212 162402212 C T FSTL5 Missense_Mutation p.R523K 0.19 deleterious(0.02) possibly_damaging(0.867) TCGA-EB-A5UN-06 4 162577539 162577539 G A FSTL5 Missense_Mutation p.P279S 0.27 deleterious(0.02) probably_damaging(0.973) TCGA-EB-A5UN-06 4 166261466 166261466 C T MSMO1 Missense_Mutation p.H209Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-EB-A5UN-06 4 166963247 166963247 C T TLL1 Missense_Mutation p.R444C 0.22 deleterious(0.01) possibly_damaging(0.662) TCGA-EB-A5UN-06 4 169060731 169060731 G A ANXA10 Silent p.R65R 0.32 TCGA-EB-A5UN-06 4 175897997 175897997 C T ADAM29 Missense_Mutation p.L441F 0.22 deleterious(0.01) possibly_damaging(0.738) TCGA-EB-A5UN-06 4 177605183 177605183 C T VEGFC Missense_Mutation p.R386Q 0.17 tolerated(0.33) possibly_damaging(0.649) TCGA-EB-A5UN-06 4 177632798 177632798 C T VEGFC Missense_Mutation p.E187K 0.24 deleterious(0.03) probably_damaging(0.926) TCGA-EB-A5UN-06 4 17805784 17805784 G A DCAF16 5'UTR 0.20 TCGA-EB-A5UN-06 4 183714468 183714468 C T TENM3 Nonsense_Mutation p.R2215* 0.17 TCGA-EB-A5UN-06 4 185138934 185138934 G A ENPP6 Silent p.A13A 0.32 TCGA-EB-A5UN-06 4 188924718 188924718 G A ZFP42 Missense_Mutation p.G253R 0.14 deleterious(0.01) probably_damaging(1) TCGA-EB-A5UN-06 4 189022274 189022274 G A TRIML2 Missense_Mutation p.T89I 0.27 tolerated(0.08) benign(0.005) TCGA-EB-A5UN-06 4 1993356 1993356 G A NELFA Silent p.S110S 0.20 TCGA-EB-A5UN-06 4 25677759 25677759 C T SLC34A2 Silent p.I487I 0.28 TCGA-EB-A5UN-06 4 25831751 25831751 C T SEL1L3 Missense_Mutation p.D376N 0.32 tolerated(0.39) benign(0.012) TCGA-EB-A5UN-06 4 3225270 3225270 G A HTT Silent p.L2536L 0.18 TCGA-EB-A5UN-06 4 3451138 3451138 C T HGFAC Missense_Mutation p.P654S 0.19 tolerated_low_confidence(0.09) benign(0.047) TCGA-EB-A5UN-06 4 36179621 36179621 C T ARAP2 Missense_Mutation p.R562K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A5UN-06 4 36230273 36230273 G A ARAP2 Missense_Mutation p.S279F 0.20 deleterious(0) possibly_damaging(0.836) TCGA-EB-A5UN-06 4 467795 467795 G A ZNF721 Intron 0.12 TCGA-EB-A5UN-06 4 48537810 48537810 T C FRYL Missense_Mutation p.N2143S 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-EB-A5UN-06 4 48993969 48993969 G A CWH43 Missense_Mutation p.G125R 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 4 69696683 69696683 C T UGT2B10 3'UTR 0.35 TCGA-EB-A5UN-06 4 70080427 70080427 C T UGT2B11 Nonsense_Mutation p.W5* 0.20 TCGA-EB-A5UN-06 4 74353459 74353459 T A AFM Missense_Mutation p.Y212N 0.24 tolerated(0.85) probably_damaging(0.926) TCGA-EB-A5UN-06 4 74364955 74364955 G A AFM Missense_Mutation p.D472N 0.22 deleterious(0) probably_damaging(0.917) TCGA-EB-A5UN-06 4 74453617 74453617 G A RASSF6 Missense_Mutation p.R140C 0.21 tolerated(0.06) possibly_damaging(0.453) TCGA-EB-A5UN-06 4 77691829 77691829 G A SHROOM3 Silent p.A1800A 0.15 TCGA-EB-A5UN-06 4 79371302 79371302 A G FRAS1 Intron 0.16 TCGA-EB-A5UN-06 4 82095970 82095970 C T PRKG2 Missense_Mutation p.G202E 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 4 8229239 8229239 C T SH3TC1 Silent p.N606N 0.16 TCGA-EB-A5UN-06 4 8229240 8229240 C T SH3TC1 Silent p.L607L 0.15 TCGA-EB-A5UN-06 4 88577678 88577678 G A DMP1 Missense_Mutation p.G12R 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 4 88584266 88584266 G A DMP1 Missense_Mutation p.E446K 0.26 deleterious(0.01) unknown(0) TCGA-EB-A5UN-06 4 90830522 90830522 G A MMRN1 Nonsense_Mutation p.W240* 0.15 TCGA-EB-A5UN-06 4 951687 951687 C T TMEM175 Silent p.T306T 0.14 TCGA-EB-A5UN-06 5 102888015 102888015 G A NUDT12 Missense_Mutation p.S394F 0.22 deleterious(0) probably_damaging(0.994) TCGA-EB-A5UN-06 5 110818504 110818504 G A CAMK4 Missense_Mutation p.D284N 0.18 tolerated(0.19) possibly_damaging(0.753) TCGA-EB-A5UN-06 5 112769744 112769744 C T TSSK1B Missense_Mutation p.E265K 0.13 tolerated(0.06) benign(0.418) TCGA-EB-A5UN-06 5 118970297 118970297 G A FAM170A Missense_Mutation p.G285E 0.23 tolerated(1) benign(0.001) TCGA-EB-A5UN-06 5 130769249 130769249 G A RAPGEF6 Missense_Mutation p.S1291F 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A5UN-06 5 132087641 132087641 A G SEPT8 3'UTR 0.21 TCGA-EB-A5UN-06 5 136974639 136974639 T C KLHL3 Intron 0.19 TCGA-EB-A5UN-06 5 13780996 13780996 G A DNAH5 Silent p.L2965L 0.15 TCGA-EB-A5UN-06 5 138700376 138700376 C T PAIP2 Nonsense_Mutation p.Q88* 0.33 TCGA-EB-A5UN-06 5 139908073 139908073 C T ANKHD1 Missense_Mutation p.P1848S 0.18 possibly_damaging(0.716) TCGA-EB-A5UN-06 5 140347456 140347456 G A PCDHAC2 Missense_Mutation p.D369N 0.17 deleterious(0) benign(0.071) TCGA-EB-A5UN-06 5 140558153 140558153 C T PCDHB8 Missense_Mutation p.R180W 0.11 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-EB-A5UN-06 5 140572659 140572659 C T PCDHB10 Silent p.F178F 0.21 TCGA-EB-A5UN-06 5 140594351 140594351 G A PCDHB13 Missense_Mutation p.G219D 0.09 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-EB-A5UN-06 5 140595200 140595200 C T PCDHB13 Missense_Mutation p.S502F 0.22 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-EB-A5UN-06 5 140595485 140595485 G A PCDHB13 Missense_Mutation p.G597D 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EB-A5UN-06 5 140725448 140725448 C T PCDHGA3 Silent p.L616L 0.20 TCGA-EB-A5UN-06 5 140769655 140769655 C T PCDHGB4 Missense_Mutation p.S735F 0.19 tolerated(0.14) benign(0.125) TCGA-EB-A5UN-06 5 140784211 140784211 C T PCDHGA9 Silent p.Y564Y 0.15 TCGA-EB-A5UN-06 5 140784212 140784212 C T PCDHGA9 Missense_Mutation p.P565S 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EB-A5UN-06 5 140794045 140794045 C A PCDHGA10 Missense_Mutation p.P435T 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.63) TCGA-EB-A5UN-06 5 141335818 141335818 G A PCDH12 Silent p.F533F 0.24 TCGA-EB-A5UN-06 5 145393468 145393468 C T SH3RF2 Silent p.I301I 0.24 TCGA-EB-A5UN-06 5 149360294 149360294 C T SLC26A2 Missense_Mutation p.P380S 0.24 tolerated(0.33) benign(0.119) TCGA-EB-A5UN-06 5 154394626 154394626 A G KIF4B Missense_Mutation p.S403G 0.21 deleterious(0.02) probably_damaging(0.928) TCGA-EB-A5UN-06 5 160114984 160114984 G A ATP10B Missense_Mutation p.P33L 0.26 tolerated(0.25) benign(0.013) TCGA-EB-A5UN-06 5 161119161 161119161 G A GABRA6 Silent p.V347V 0.14 TCGA-EB-A5UN-06 5 169015402 169015402 C T SPDL1 5'UTR 0.14 TCGA-EB-A5UN-06 5 169108827 169108827 T C DOCK2 Missense_Mutation p.F184L 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-EB-A5UN-06 5 169129343 169129343 A G DOCK2 Missense_Mutation p.Q432R 0.23 deleterious(0.04) benign(0.441) TCGA-EB-A5UN-06 5 169810726 169810726 G A KCNMB1 Missense_Mutation p.A88V 0.23 tolerated(0.89) benign(0.301) TCGA-EB-A5UN-06 5 176520456 176520456 G A FGFR4 Missense_Mutation p.R434Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-EB-A5UN-06 5 178358927 178358927 G A ZFP2 Missense_Mutation p.E205K 0.17 tolerated(0.07) benign(0.422) TCGA-EB-A5UN-06 5 179200914 179200914 C T MAML1 Missense_Mutation p.P696L 0.20 deleterious(0.04) benign(0.13) TCGA-EB-A5UN-06 5 180030182 180030182 C T FLT4 3'UTR 0.16 TCGA-EB-A5UN-06 5 180374646 180374646 T G BTNL8 Intron 0.20 TCGA-EB-A5UN-06 5 22078763 22078763 G A CDH12 Missense_Mutation p.S8F 0.12 tolerated(0.7) probably_damaging(0.962) TCGA-EB-A5UN-06 5 34913671 34913671 G A RAD1 Nonsense_Mutation p.Q71* 0.23 TCGA-EB-A5UN-06 5 35776457 35776457 G A SPEF2 Missense_Mutation p.E1393K 0.22 deleterious(0) possibly_damaging(0.534) TCGA-EB-A5UN-06 5 38869131 38869131 C T OSMR Intron 0.22 TCGA-EB-A5UN-06 5 43161961 43161961 C T ZNF131 Missense_Mutation p.H294Y 0.19 tolerated(0.11) benign(0.038) TCGA-EB-A5UN-06 5 453640 453640 C T EXOC3 Missense_Mutation p.H174Y 0.26 tolerated(0.37) benign(0.099) TCGA-EB-A5UN-06 5 64447749 64447749 C T ADAMTS6 Missense_Mutation p.A1090T 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A5UN-06 5 68413171 68413172 - T SLC30A5 Frame_Shift_Ins p.A465Cfs*6 0.17 TCGA-EB-A5UN-06 5 72469578 72469578 G A TMEM174 Missense_Mutation p.G170R 0.22 deleterious(0.01) possibly_damaging(0.847) TCGA-EB-A5UN-06 5 75587134 75587134 G C SV2C Missense_Mutation p.R409P 0.21 tolerated(0.08) probably_damaging(0.932) TCGA-EB-A5UN-06 5 77805832 77805832 G A LHFPL2 Missense_Mutation p.R69W 0.22 deleterious(0) probably_damaging(0.972) TCGA-EB-A5UN-06 5 79378933 79378933 A G THBS4 Missense_Mutation p.Q952R 0.22 tolerated(0.98) benign(0) TCGA-EB-A5UN-06 5 80409702 80409702 G A RASGRF2 Silent p.V811V 0.24 TCGA-EB-A5UN-06 5 88018643 88018643 G A MEF2C Silent p.D410D 0.21 TCGA-EB-A5UN-06 5 90050888 90050888 C T GPR98 Silent p.F3822F 0.14 TCGA-EB-A5UN-06 5 90052378 90052378 G A GPR98 Missense_Mutation p.M3896I 0.21 benign(0.031) TCGA-EB-A5UN-06 5 95733140 95733140 C T PCSK1 Missense_Mutation p.R541Q 0.28 tolerated(0.2) benign(0.391) TCGA-EB-A5UN-06 6 106553250 106553250 G A PRDM1 Silent p.S405S 0.24 TCGA-EB-A5UN-06 6 117252575 117252575 C T RFX6 Missense_Mutation p.T898I 0.37 tolerated_low_confidence(0.09) benign(0.172) TCGA-EB-A5UN-06 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.20 TCGA-EB-A5UN-06 6 13365152 13365152 G A GFOD1 Silent p.T332T 0.17 TCGA-EB-A5UN-06 6 170592531 170592531 G A DLL1 Silent p.I612I 0.24 TCGA-EB-A5UN-06 6 28268829 28268829 C T PGBD1 Missense_Mutation p.P400S 0.22 tolerated(0.13) probably_damaging(0.997) TCGA-EB-A5UN-06 6 28501756 28501756 T A GPX5 Missense_Mutation p.S160T 0.18 deleterious(0.03) benign(0.007) TCGA-EB-A5UN-06 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.18 TCGA-EB-A5UN-06 6 29055001 29055010 GGGAGCTCTC AGGGGGGTTTA OR2B3 Nonsense_Mutation p.E6* 0.11 TCGA-EB-A5UN-06 6 32039998 32039998 C T TNXB Missense_Mutation p.D1587N 0.25 possibly_damaging(0.697) TCGA-EB-A5UN-06 6 32816429 32816429 C T TAP1 Silent p.Q582Q 0.14 TCGA-EB-A5UN-06 6 34496597 34496597 G A PACSIN1 Silent p.K133K 0.22 TCGA-EB-A5UN-06 6 35392117 35392117 C T PPARD Silent p.I213I 0.28 TCGA-EB-A5UN-06 6 35715112 35715112 C T ARMC12 Silent p.L200L 0.18 TCGA-EB-A5UN-06 6 36106191 36106191 G A MAPK13 Silent p.T244T 0.20 TCGA-EB-A5UN-06 6 36270247 36270247 G A PNPLA1 Splice_Site p.X462_splice 0.25 TCGA-EB-A5UN-06 6 37443126 37443126 C T CMTR1 Silent p.I658I 0.19 TCGA-EB-A5UN-06 6 38791428 38791428 C T DNAH8 Missense_Mutation p.P1054S 0.21 benign(0.002) TCGA-EB-A5UN-06 6 42647465 42647465 C T UBR2 Missense_Mutation p.P1538L 0.16 tolerated(0.22) benign(0.001) TCGA-EB-A5UN-06 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.17 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-EB-A5UN-06 6 55128616 55128616 G A HCRTR2 Missense_Mutation p.R253Q 0.19 tolerated(0.49) benign(0.028) TCGA-EB-A5UN-06 6 62687980 62687980 G A KHDRBS2 Silent p.F158F 0.28 TCGA-EB-A5UN-06 6 63990574 63990574 C T LGSN Silent p.R294R 0.54 TCGA-EB-A5UN-06 6 73900302 73900302 G A KCNQ5 Missense_Mutation p.M547I 0.38 deleterious(0) benign(0.193) TCGA-EB-A5UN-06 6 74063703 74063703 G A DPPA5 Silent p.L55L 0.25 TCGA-EB-A5UN-06 6 8417167 8417167 G A SLC35B3 Missense_Mutation p.S312F 0.17 tolerated(0.18) possibly_damaging(0.61) TCGA-EB-A5UN-06 6 84233157 84233157 C T PRSS35 5'UTR 0.19 TCGA-EB-A5UN-06 6 90491189 90491189 T C MDN1 Silent p.A524A 0.26 TCGA-EB-A5UN-06 7 100371061 100371061 C T ZAN Missense_Mutation p.S1860F 0.39 unknown(0) TCGA-EB-A5UN-06 7 100373013 100373013 C T ZAN Missense_Mutation p.S1947F 0.37 unknown(0) TCGA-EB-A5UN-06 7 107420172 107420172 C T SLC26A3 Missense_Mutation p.G450R 0.28 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 7 116918271 116918271 C T WNT2 Missense_Mutation p.E341K 0.15 tolerated(0.33) possibly_damaging(0.622) TCGA-EB-A5UN-06 7 121650776 121650776 C T PTPRZ1 Missense_Mutation p.S559F 0.37 deleterious_low_confidence(0) benign(0.189) TCGA-EB-A5UN-06 7 127253538 127253538 G C PAX4 Missense_Mutation p.A196G 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-EB-A5UN-06 7 128355670 128355670 C T FAM71F1 Missense_Mutation p.L59F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 7 129658435 129658435 G A ZC3HC1 3'UTR 0.12 TCGA-EB-A5UN-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-EB-A5UN-06 7 141490303 141490303 A T TAS2R5 Missense_Mutation p.I48F 0.35 deleterious(0.01) possibly_damaging(0.735) TCGA-EB-A5UN-06 7 141750583 141750583 G A MGAM Silent p.E908E 0.37 TCGA-EB-A5UN-06 7 142605727 142605727 C T TRPV5 Missense_Mutation p.G715R 0.31 tolerated(0.1) benign(0.099) TCGA-EB-A5UN-06 7 142650981 142650981 C T KEL Silent p.L329L 0.17 TCGA-EB-A5UN-06 7 142651317 142651317 C T KEL Missense_Mutation p.R293Q 0.36 tolerated(1) benign(0.011) TCGA-EB-A5UN-06 7 142836783 142836783 A T PIP 3'UTR 0.17 TCGA-EB-A5UN-06 7 143141131 143141131 C T TAS2R60 Missense_Mutation p.P196S 0.17 tolerated(0.33) benign(0.049) TCGA-EB-A5UN-06 7 144098263 144098263 C T NOBOX Silent p.G240G 0.20 TCGA-EB-A5UN-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.14 deleterious(0) possibly_damaging(0.466) TCGA-EB-A5UN-06 7 1478547 1478547 G A MICALL2 Missense_Mutation p.P684L 0.19 tolerated(0.12) possibly_damaging(0.847) TCGA-EB-A5UN-06 7 148947312 148947312 G A ZNF212 Silent p.E29E 0.10 TCGA-EB-A5UN-06 7 149992437 149992437 C T ACTR3C Splice_Site 0.24 TCGA-EB-A5UN-06 7 150217904 150217904 G A GIMAP7 Nonsense_Mutation p.W281* 0.27 TCGA-EB-A5UN-06 7 150696117 150696117 A G NOS3 Silent p.P300P 0.12 TCGA-EB-A5UN-06 7 150696118 150696118 G A NOS3 Missense_Mutation p.E301K 0.12 deleterious(0.02) benign(0.029) TCGA-EB-A5UN-06 7 154862632 154862632 C T HTR5A Missense_Mutation p.T8I 0.31 deleterious(0.01) benign(0.209) TCGA-EB-A5UN-06 7 27135528 27135528 C T HOXA1 Missense_Mutation p.D2N 0.32 tolerated(0.05) probably_damaging(0.991) TCGA-EB-A5UN-06 7 27934844 27934844 G A JAZF1 Missense_Mutation p.P127L 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-EB-A5UN-06 7 31735236 31735236 G A PPP1R17 Splice_Site p.X79_splice 0.18 TCGA-EB-A5UN-06 7 34698152 34698152 C T NPSR1 Missense_Mutation p.S43F 0.14 deleterious(0) probably_damaging(0.991) TCGA-EB-A5UN-06 7 36616188 36616188 G A AOAH Missense_Mutation p.S338L 0.13 deleterious(0.01) probably_damaging(0.933) TCGA-EB-A5UN-06 7 41729970 41729970 C T INHBA Missense_Mutation p.D187N 0.28 tolerated(0.06) benign(0.395) TCGA-EB-A5UN-06 7 50444480 50444480 G A IKZF1 Missense_Mutation p.R137K 0.42 deleterious(0) possibly_damaging(0.867) TCGA-EB-A5UN-06 7 53103866 53103866 G A POM121L12 Missense_Mutation p.E168K 0.17 tolerated(0.27) possibly_damaging(0.801) TCGA-EB-A5UN-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.32 TCGA-EB-A5UN-06 7 57528829 57528829 C T ZNF716 Missense_Mutation p.S221F 0.22 deleterious(0) possibly_damaging(0.871) TCGA-EB-A5UN-06 7 65439597 65439597 G A GUSB Missense_Mutation p.P387L 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 7 66240222 66240222 G A KCTD7 Missense_Mutation p.R63Q 0.20 tolerated(0.21) possibly_damaging(0.545) TCGA-EB-A5UN-06 7 72658023 72658023 C T GTF2IRD2P1 RNA 0.29 TCGA-EB-A5UN-06 7 72658675 72658675 C T GTF2IRD2P1 RNA 0.19 TCGA-EB-A5UN-06 7 73933935 73933935 C T GTF2IRD1 Nonsense_Mutation p.R300* 0.22 TCGA-EB-A5UN-06 7 76828952 76828952 C T FGL2 Silent p.G53G 0.16 TCGA-EB-A5UN-06 7 82545906 82545906 C T PCLO Missense_Mutation p.R3799Q 0.18 unknown(0) TCGA-EB-A5UN-06 7 82546056 82546056 C T PCLO Missense_Mutation p.R3749K 0.16 unknown(0) TCGA-EB-A5UN-06 7 82585471 82585471 T A PCLO Nonsense_Mutation p.K1600* 0.17 TCGA-EB-A5UN-06 7 82764424 82764424 G A PCLO Silent p.S814S 0.34 TCGA-EB-A5UN-06 7 87848225 87848225 G A SRI Silent p.P28P 0.20 TCGA-EB-A5UN-06 7 87848226 87848226 G A SRI Missense_Mutation p.P28L 0.20 tolerated(0.24) unknown(0) TCGA-EB-A5UN-06 7 92732887 92732887 C T SAMD9 Missense_Mutation p.E842K 0.22 tolerated(0.09) benign(0.065) TCGA-EB-A5UN-06 7 94038103 94038103 C T COL1A2 Missense_Mutation p.P254S 0.18 unknown(0) TCGA-EB-A5UN-06 7 99654990 99654990 G C ZSCAN21 Missense_Mutation p.E121Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 8 101074939 101074939 C T RGS22 Missense_Mutation p.G465E 0.10 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 8 104897613 104897613 G A RIMS2 Silent p.S262S 0.20 TCGA-EB-A5UN-06 8 108276515 108276515 C T ANGPT1 Missense_Mutation p.D424N 0.17 tolerated(0.57) benign(0.021) TCGA-EB-A5UN-06 8 121357652 121357652 C T COL14A1 Missense_Mutation p.P1643S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A5UN-06 8 121379449 121379449 T C COL14A1 Missense_Mutation p.V1706A 0.19 tolerated(0.07) benign(0.09) TCGA-EB-A5UN-06 8 121457312 121457312 G A MRPL13 Missense_Mutation p.P8L 0.16 tolerated(0.06) benign(0.022) TCGA-EB-A5UN-06 8 121457313 121457313 G A MRPL13 Missense_Mutation p.P8S 0.16 tolerated(0.24) benign(0.002) TCGA-EB-A5UN-06 8 123964611 123964611 G A ZHX2 Silent p.P287P 0.25 TCGA-EB-A5UN-06 8 124096405 124096405 C T TBC1D31 Missense_Mutation p.T115I 0.23 deleterious(0) possibly_damaging(0.821) TCGA-EB-A5UN-06 8 124096406 124096406 C T TBC1D31 Silent p.T115T 0.22 TCGA-EB-A5UN-06 8 133740183 133740183 C T TMEM71 Silent p.K160K 0.21 TCGA-EB-A5UN-06 8 144297289 144297289 G A GPIHBP1 Missense_Mutation p.G151S 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-EB-A5UN-06 8 18432754 18432754 C T PSD3 Silent p.L841L 0.21 TCGA-EB-A5UN-06 8 21938871 21938871 C T DMTN Missense_Mutation p.S372F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EB-A5UN-06 8 24167679 24167679 C T ADAM28 Silent p.N77N 0.14 TCGA-EB-A5UN-06 8 24321470 24321470 C T ADAM7 Silent p.I103I 0.24 TCGA-EB-A5UN-06 8 25266340 25266340 G A DOCK5 Missense_Mutation p.R1763K 0.18 tolerated(0.1) possibly_damaging(0.614) TCGA-EB-A5UN-06 8 25337599 25337599 C T CDCA2 Silent p.L331L 0.12 TCGA-EB-A5UN-06 8 26623663 26623663 C T ADRA1A Intron 0.16 TCGA-EB-A5UN-06 8 27509101 27509101 C T SCARA3 Silent p.F61F 0.17 TCGA-EB-A5UN-06 8 3200906 3200906 G A CSMD1 Silent p.L1181L 0.15 TCGA-EB-A5UN-06 8 33454823 33454823 G A DUSP26 Missense_Mutation p.L71F 0.32 deleterious(0) probably_damaging(0.969) TCGA-EB-A5UN-06 8 39872801 39872801 C T IDO2 Missense_Mutation p.P315S 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A5UN-06 8 49832489 49832489 G A SNAI2 Silent p.P197P 0.19 TCGA-EB-A5UN-06 8 49832490 49832490 G A SNAI2 Missense_Mutation p.P197L 0.19 deleterious(0) probably_damaging(0.945) TCGA-EB-A5UN-06 8 52387649 52387649 C T PXDNL Missense_Mutation p.E193K 0.17 tolerated(0.26) benign(0.013) TCGA-EB-A5UN-06 8 57224833 57224833 G A SDR16C5 Silent p.V116V 0.19 TCGA-EB-A5UN-06 8 69400281 69400281 G A C8orf34 Missense_Mutation p.D254N 0.16 tolerated(0.05) possibly_damaging(0.871) TCGA-EB-A5UN-06 8 72128987 72128987 A G EYA1 Silent p.L434L 0.20 TCGA-EB-A5UN-06 8 76463644 76463644 G A HNF4G Missense_Mutation p.R125K 0.17 tolerated(0.09) benign(0.391) TCGA-EB-A5UN-06 8 76476207 76476207 C T HNF4G Intron 0.17 TCGA-EB-A5UN-06 8 77767503 77767503 G A ZFHX4 Silent p.E2782E 0.19 TCGA-EB-A5UN-06 8 8235485 8235485 G A SGK223 Missense_Mutation p.P145L 0.14 possibly_damaging(0.778) TCGA-EB-A5UN-06 8 86575269 86575269 G A REXO1L1P Missense_Mutation p.A153V 0.16 tolerated(0.18) benign(0.001) TCGA-EB-A5UN-06 8 92301426 92301426 C T SLC26A7 Missense_Mutation p.P86S 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 8 93017275 93017275 G A RUNX1T1 Intron 0.37 TCGA-EB-A5UN-06 8 93029504 93029504 G A RUNX1T1 Missense_Mutation p.P70L 0.19 tolerated(0.33) probably_damaging(0.999) TCGA-EB-A5UN-06 8 93029589 93029589 G A RUNX1T1 Missense_Mutation p.R42C 0.23 deleterious_low_confidence(0.03) probably_damaging(0.969) TCGA-EB-A5UN-06 8 95186335 95186335 C T CDH17 Missense_Mutation p.R193Q 0.23 tolerated(0.48) benign(0.015) TCGA-EB-A5UN-06 8 9610104 9610104 G A TNKS Missense_Mutation p.E1041K 0.17 tolerated(0.06) benign(0.325) TCGA-EB-A5UN-06 9 100257989 100257989 C G TDRD7 Missense_Mutation p.R1041G 0.20 deleterious(0) benign(0.361) TCGA-EB-A5UN-06 9 102591178 102591178 C T NR4A3 Missense_Mutation p.S296L 0.30 tolerated(0.2) possibly_damaging(0.457) TCGA-EB-A5UN-06 9 104390554 104390554 C T GRIN3A Missense_Mutation p.G828R 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A5UN-06 9 104432634 104432634 A T GRIN3A Missense_Mutation p.I687N 0.30 deleterious(0) probably_damaging(0.977) TCGA-EB-A5UN-06 9 117240938 117240938 G A DFNB31 Silent p.I244I 0.24 TCGA-EB-A5UN-06 9 117849292 117849292 C T TNC Missense_Mutation p.E240K 0.19 tolerated(0.09) benign(0.19) TCGA-EB-A5UN-06 9 119976926 119976926 C T ASTN2 Silent p.K242K 0.31 TCGA-EB-A5UN-06 9 121976381 121976381 G A BRINP1 Silent p.A246A 0.20 TCGA-EB-A5UN-06 9 125377696 125377696 G A OR1Q1 Missense_Mutation p.R227Q 0.30 tolerated(0.08) benign(0.006) TCGA-EB-A5UN-06 9 126128249 126128249 G A CRB2 Missense_Mutation p.G158R 0.38 deleterious(0) unknown(0) TCGA-EB-A5UN-06 9 129102878 129102878 C T MVB12B Missense_Mutation p.S58F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 9 130191122 130191122 C T ZNF79 Missense_Mutation p.P10S 0.28 tolerated(0.17) benign(0.011) TCGA-EB-A5UN-06 9 136913320 136913320 G A BRD3 Missense_Mutation p.S324F 0.18 deleterious(0) probably_damaging(0.992) TCGA-EB-A5UN-06 9 137671962 137671962 C T COL5A1 Silent p.I800I 0.26 TCGA-EB-A5UN-06 9 139905886 139905886 G A ABCA2 Silent p.F1924F 0.36 TCGA-EB-A5UN-06 9 139911159 139911159 G A ABCA2 Silent p.F930F 0.20 TCGA-EB-A5UN-06 9 27455150 27455150 T G MOB3B Missense_Mutation p.E133D 0.23 tolerated(0.74) benign(0.001) TCGA-EB-A5UN-06 9 78938185 78938185 G A PCSK5 Silent p.K1413K 0.26 TCGA-EB-A5UN-06 X 100548010 100548010 G A TAF7L Silent p.L8L 0.40 TCGA-EB-A5UN-06 X 105168803 105168803 G A NRK Missense_Mutation p.S1032N 0.52 tolerated_low_confidence(0.23) benign(0.003) TCGA-EB-A5UN-06 X 109931906 109931906 G A CHRDL1 Missense_Mutation p.H302Y 0.36 deleterious(0.03) possibly_damaging(0.811) TCGA-EB-A5UN-06 X 111155630 111155630 C T TRPC5 Silent p.R263R 0.49 TCGA-EB-A5UN-06 X 120007815 120007815 C T CT47B1 Missense_Mutation p.E279K 0.44 tolerated(0.1) unknown(0) TCGA-EB-A5UN-06 X 122756648 122756648 G A THOC2 Missense_Mutation p.P1249L 0.48 tolerated(0.33) benign(0.002) TCGA-EB-A5UN-06 X 122756649 122756649 G A THOC2 Missense_Mutation p.P1249S 0.52 tolerated(0.6) benign(0.034) TCGA-EB-A5UN-06 X 123540248 123540248 C T TENM1 Missense_Mutation p.E1692K 0.35 tolerated(0.48) benign(0.01) TCGA-EB-A5UN-06 X 135431321 135431321 C T GPR112 Missense_Mutation p.S1819L 0.44 tolerated(1) benign(0.001) TCGA-EB-A5UN-06 X 139047614 139047614 T A CXorf66 Missense_Mutation p.K14N 0.39 deleterious(0.02) benign(0) TCGA-EB-A5UN-06 X 142795189 142795189 C T SPANXN2 Silent p.E163E 0.39 TCGA-EB-A5UN-06 X 153191630 153191630 C T ARHGAP4 Silent p.R9R 0.67 TCGA-EB-A5UN-06 X 154159616 154159616 G C F8 Missense_Mutation p.P817A 0.43 tolerated(0.11) benign(0.196) TCGA-EB-A5UN-06 X 1742107 1742107 G A ASMT Missense_Mutation p.V49M 0.28 deleterious(0) probably_damaging(0.988) TCGA-EB-A5UN-06 X 2139170 2139170 G A DHRSX Missense_Mutation p.S302F 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-EB-A5UN-06 X 228120 228120 G A GTPBP6 Missense_Mutation p.S135F 0.21 deleterious(0) probably_damaging(0.995) TCGA-EB-A5UN-06 X 24608151 24608151 C T PCYT1B Missense_Mutation p.E159K 0.35 tolerated(0.53) benign(0.034) TCGA-EB-A5UN-06 X 26212773 26212773 C T MAGEB6 Silent p.L270L 0.40 TCGA-EB-A5UN-06 X 26212987 26212987 G A MAGEB6 Missense_Mutation p.V342M 0.39 deleterious(0.01) benign(0.291) TCGA-EB-A5UN-06 X 27766703 27766703 G A DCAF8L2 Missense_Mutation p.R564Q 0.55 deleterious(0.02) probably_damaging(0.914) TCGA-EB-A5UN-06 X 47775619 47775619 C T ZNF81 Missense_Mutation p.S525F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 X 53112163 53112163 C T TSPYL2 Silent p.D161D 0.21 TCGA-EB-A5UN-06 X 69890232 69890232 C T TEX11 Missense_Mutation p.D474N 0.41 deleterious(0.01) benign(0.441) TCGA-EB-A5UN-06 X 71358661 71358661 G A NHSL2 Silent p.G421G 0.57 TCGA-EB-A5UN-06 X 73047452 73047452 G A XIST RNA 0.50 TCGA-EB-A5UN-06 X 73959937 73959937 C T KIAA2022 Silent p.L1485L 0.30 TCGA-EB-A5UN-06 X 73963897 73963897 C T KIAA2022 Silent p.L165L 0.48 TCGA-EB-A5UN-06 X 75650056 75650056 G A MAGEE1 Missense_Mutation p.G578E 0.62 tolerated(0.11) probably_damaging(0.945) TCGA-EB-A5UN-06 X 76920202 76920202 G A ATRX Missense_Mutation p.S1292L 0.27 benign(0.147) TCGA-EB-A5UN-06 X 78010799 78010799 C T LPAR4 Nonsense_Mutation p.R145* 0.33 TCGA-EB-A5UN-06 X 84526385 84526385 C T ZNF711 Missense_Mutation p.H613Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-EB-A5UN-06 X 89177073 89177073 G A TGIF2LX 5'UTR 0.44 TCGA-EB-A5UN-06 X 9000383 9000383 C T FAM9B Missense_Mutation p.G50R 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A5VU-01 11 4824704 4824704 C A OR52R1 Missense_Mutation p.G303W 0.32 tolerated(0.09) benign(0) TCGA-EB-A5VU-01 11 61511203 61511203 A T DAGLA Missense_Mutation p.S791C 0.35 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EB-A5VU-01 12 55794987 55794987 G A OR6C65 Silent p.K225K 0.15 TCGA-EB-A5VU-01 14 86089288 86089288 A T FLRT2 Missense_Mutation p.H477L 0.31 deleterious(0.04) benign(0.102) TCGA-EB-A5VU-01 15 91422045 91422045 C T FURIN Missense_Mutation p.R298W 0.16 deleterious(0.03) probably_damaging(0.989) TCGA-EB-A5VU-01 16 30365235 30365235 T C CD2BP2 Missense_Mutation p.D121G 0.16 deleterious(0) probably_damaging(0.974) TCGA-EB-A5VU-01 16 57559858 57559858 C T CCDC102A Missense_Mutation p.R256Q 0.14 tolerated(1) benign(0.043) TCGA-EB-A5VU-01 17 10397671 10397671 C T MYH1 Silent p.A1889A 0.34 TCGA-EB-A5VU-01 17 46670620 46670620 G A HOXB5 Missense_Mutation p.P142L 0.40 tolerated(0.28) benign(0.001) TCGA-EB-A5VU-01 18 70209136 70209136 C T CBLN2 Missense_Mutation p.R87H 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-EB-A5VU-01 19 22940904 22940904 T C ZNF99 Missense_Mutation p.N603D 0.25 tolerated(0.25) benign(0.302) TCGA-EB-A5VU-01 19 45016106 45016106 G T CEACAM20 RNA 0.22 TCGA-EB-A5VU-01 19 5222727 5222727 G A PTPRS Missense_Mutation p.R1026C 0.27 deleterious(0.02) possibly_damaging(0.634) TCGA-EB-A5VU-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.80 tolerated(0.06) benign(0.006) TCGA-EB-A5VU-01 1 11589864 11589864 G A PTCHD2 Missense_Mutation p.A984T 0.21 tolerated_low_confidence(0.15) possibly_damaging(0.587) TCGA-EB-A5VU-01 1 144864276 144864276 C T PDE4DIP Missense_Mutation p.R1940Q 0.08 tolerated(0.32) benign(0.032) TCGA-EB-A5VU-01 1 16378230 16378230 G T CLCNKB Silent p.G441G 0.42 TCGA-EB-A5VU-01 1 2541242 2541242 C T MMEL1 Silent p.P107P 0.39 TCGA-EB-A5VU-01 1 53416510 53416510 G A SCP2 Missense_Mutation p.A95T 0.23 deleterious(0) benign(0.16) TCGA-EB-A5VU-01 1 94476824 94476824 G A ABCA4 Missense_Mutation p.R1860W 0.23 deleterious(0) benign(0.077) TCGA-EB-A5VU-01 20 42162936 42162936 A G L3MBTL1 Missense_Mutation p.S516G 0.28 tolerated(1) benign(0.001) TCGA-EB-A5VU-01 20 44506338 44506338 G A ZSWIM3 Missense_Mutation p.V381I 0.07 tolerated(0.16) benign(0.042) TCGA-EB-A5VU-01 20 44839049 44839049 G A CDH22 Missense_Mutation p.R395W 0.05 deleterious(0.01) benign(0.001) TCGA-EB-A5VU-01 20 53092524 53092524 C T DOK5 Silent p.Y13Y 0.66 TCGA-EB-A5VU-01 20 60768483 60768483 C T MTG2 Missense_Mutation p.P3S 0.05 tolerated_low_confidence(0.11) benign(0.025) TCGA-EB-A5VU-01 20 60847240 60847240 G A OSBPL2 Silent p.R106R 0.09 TCGA-EB-A5VU-01 20 60847256 60847256 G A OSBPL2 Missense_Mutation p.E112K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EB-A5VU-01 20 60847303 60847303 G A OSBPL2 Silent p.L127L 0.06 TCGA-EB-A5VU-01 20 60847309 60847309 G A OSBPL2 Silent p.R129R 0.05 TCGA-EB-A5VU-01 20 60937519 60937519 C G LAMA5 Missense_Mutation p.Q129H 0.11 probably_damaging(1) TCGA-EB-A5VU-01 20 62187019 62187019 G T C20orf195 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0.02) benign(0.11) TCGA-EB-A5VU-01 20 62187046 62187046 G C C20orf195 Silent p.L10L 0.06 TCGA-EB-A5VU-01 20 62187088 62187088 G T C20orf195 Missense_Mutation p.Q24H 0.06 tolerated(0.08) possibly_damaging(0.465) TCGA-EB-A5VU-01 20 62187101 62187101 G A C20orf195 Missense_Mutation p.D29N 0.06 tolerated(0.35) benign(0.015) TCGA-EB-A5VU-01 20 62853291 62853291 C T MYT1 Nonsense_Mutation p.Q763* 0.15 TCGA-EB-A5VU-01 20 62867928 62867928 C T MYT1 Missense_Mutation p.A973V 0.13 possibly_damaging(0.868) TCGA-EB-A5VU-01 20 62867971 62867971 C A MYT1 Silent p.V987V 0.12 TCGA-EB-A5VU-01 20 62868740 62868740 C T MYT1 Silent p.S1030S 0.11 TCGA-EB-A5VU-01 20 62871173 62871173 C A MYT1 Missense_Mutation p.Q1052K 0.14 possibly_damaging(0.72) TCGA-EB-A5VU-01 20 62871241 62871241 C T MYT1 Silent p.I1074I 0.14 TCGA-EB-A5VU-01 20 62871771 62871771 C G MYT1 Missense_Mutation p.I1112M 0.17 probably_damaging(0.998) TCGA-EB-A5VU-01 20 62871846 62871846 C T MYT1 3'UTR 0.16 TCGA-EB-A5VU-01 20 62871933 62871933 C T MYT1 3'UTR 0.13 TCGA-EB-A5VU-01 21 39212999 39212999 C A KCNJ6 5'UTR 0.17 TCGA-EB-A5VU-01 2 161349987 161349987 G T RBMS1 5'UTR 0.23 TCGA-EB-A5VU-01 2 179702378 179702378 C T CCDC141 Missense_Mutation p.G1190S 0.37 tolerated(1) benign(0.006) TCGA-EB-A5VU-01 2 31628791 31628791 C G XDH Missense_Mutation p.A28P 0.26 tolerated(0.24) possibly_damaging(0.555) TCGA-EB-A5VU-01 2 72945329 72945329 C T EXOC6B Missense_Mutation p.R191Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-EB-A5VU-01 2 86509339 86509339 G A REEP1 Missense_Mutation p.A27V 0.19 deleterious(0) probably_damaging(0.979) TCGA-EB-A5VU-01 3 33481323 33481323 C G UBP1 Missense_Mutation p.K6N 0.22 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-EB-A5VU-01 4 6611721 6611721 G A MAN2B2 Missense_Mutation p.G735S 0.15 deleterious(0.03) possibly_damaging(0.868) TCGA-EB-A5VU-01 4 67841 67841 T A Z95704.1 3'Flank 0.50 TCGA-EB-A5VU-01 4 67846 67846 C A Z95704.1 3'Flank 0.52 TCGA-EB-A5VU-01 6 42237199 42237199 C T TRERF1 Missense_Mutation p.G44R 0.38 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-EB-A5VU-01 7 100238434 100238434 C T TFR2 Silent p.L116L 0.30 TCGA-EB-A5VU-01 7 100369619 100369619 G A ZAN Missense_Mutation p.A1801T 0.19 unknown(0) TCGA-EB-A5VU-01 7 127251181 127251181 G T PAX4 Silent p.A323A 0.12 TCGA-EB-A5VU-01 7 140386991 140386991 C G ADCK2 Missense_Mutation p.P503A 0.45 tolerated(1) benign(0) TCGA-EB-A5VU-01 7 23163401 23163401 G A KLHL7 Silent p.T42T 0.24 TCGA-EB-A5VU-01 7 38725478 38725478 C A FAM183B Missense_Mutation p.R43L 0.39 tolerated(0.13) benign(0.016) TCGA-EB-A5VU-01 7 98254390 98254390 C T NPTX2 Missense_Mutation p.P267L 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A5VU-01 8 141557595 141557595 C G AGO2 Missense_Mutation p.V574L 0.20 tolerated(0.35) benign(0.022) TCGA-EB-A5VU-01 8 39666977 39666977 T A ADAM2 Missense_Mutation p.Q174H 0.14 tolerated(0.13) benign(0.001) TCGA-EB-A5VU-01 9 66459862 66459862 T C RP11-262H14.1 RNA 0.32 TCGA-EB-A5VU-01 9 66459863 66459863 G A RP11-262H14.1 RNA 0.32 TCGA-EB-A6L9-06 11 56344734 56344734 T C OR5M10 Missense_Mutation p.N155S 0.12 tolerated(0.84) benign(0.047) TCGA-EB-A6L9-06 11 66360426 66360426 G T CCDC87 Missense_Mutation p.P21T 0.20 deleterious(0) probably_damaging(0.998) TCGA-EB-A6L9-06 13 21357905 21357905 C G XPO4 Missense_Mutation p.E1138Q 0.07 deleterious(0.04) possibly_damaging(0.772) TCGA-EB-A6L9-06 14 106173575 106173575 C T IGHA1 Missense_Mutation p.R331H 0.18 tolerated(0.1) possibly_damaging(0.847) TCGA-EB-A6L9-06 14 66135996 66135996 G A FUT8 Silent p.V211V 0.10 TCGA-EB-A6L9-06 14 73464799 73464799 C T ZFYVE1 Silent p.T236T 0.05 TCGA-EB-A6L9-06 15 41148987 41148987 C T SPINT1 Silent p.V468V 0.05 TCGA-EB-A6L9-06 16 2139941 2139942 TG - PKD1 Frame_Shift_Del p.T4233Rfs*152 0.14 TCGA-EB-A6L9-06 17 43592322 43592322 G A LRRC37A4P RNA 0.16 TCGA-EB-A6L9-06 19 11598443 11598443 C T ZNF653 Missense_Mutation p.V279M 0.05 deleterious(0) possibly_damaging(0.831) TCGA-EB-A6L9-06 19 19824960 19824960 C A ZNF14 Missense_Mutation p.G44V 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-EB-A6L9-06 19 23926951 23926951 T C ZNF681 Silent p.T467T 0.11 TCGA-EB-A6L9-06 19 41600994 41600994 C T CYP2A13 Missense_Mutation p.P431L 0.13 deleterious(0.01) probably_damaging(1) TCGA-EB-A6L9-06 19 48976636 48976636 G A CYTH2 Splice_Site p.X145_splice 0.10 TCGA-EB-A6L9-06 19 5787318 5787318 C A DUS3L Missense_Mutation p.G423C 0.20 tolerated(0.08) possibly_damaging(0.518) TCGA-EB-A6L9-06 1 160104348 160104348 T C ATP1A2 Silent p.G634G 0.07 TCGA-EB-A6L9-06 1 236910965 236910965 A G ACTN2 Splice_Site p.X469_splice 0.13 TCGA-EB-A6L9-06 20 1286074 1286074 C T SNPH Silent p.F287F 0.07 TCGA-EB-A6L9-06 20 5902991 5902991 C T CHGB Silent p.D67D 0.10 TCGA-EB-A6L9-06 2 113955151 113955151 C T PSD4 Silent p.G799G 0.11 TCGA-EB-A6L9-06 2 236708163 236708163 C T AGAP1 Silent p.F318F 0.15 TCGA-EB-A6L9-06 3 170611121 170611121 A - EIF5A2 3'UTR 0.08 TCGA-EB-A6L9-06 4 74364894 74364894 C T AFM Silent p.G451G 0.09 TCGA-EB-A6L9-06 5 174939195 174939195 C T SFXN1 Nonsense_Mutation p.Q198* 0.10 TCGA-EB-A6L9-06 5 24492935 24492935 C A CDH10 Missense_Mutation p.D539Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-EB-A6L9-06 7 102733074 102733077 TTAC - ARMC10 Frame_Shift_Del p.T229Efs*10 0.12 TCGA-EB-A6L9-06 7 141760113 141760113 C G MGAM Silent p.V1354V 0.16 TCGA-EB-A6L9-06 8 145052111 145052111 C T PARP10 Missense_Mutation p.A899T 0.12 tolerated(0.09) benign(0.335) TCGA-EB-A6L9-06 8 41456600 41456600 C A AGPAT6 5'UTR 0.16 TCGA-EB-A6L9-06 9 72933446 72933446 G A SMC5 Missense_Mutation p.R608Q 0.05 tolerated(0.48) benign(0.003) TCGA-EB-A6L9-06 9 85862715 85862715 T C FRMD3 3'UTR 0.05 TCGA-EB-A6QY-01 10 104172287 104172287 C T PSD Silent p.L533L 0.42 TCGA-EB-A6QY-01 10 106927045 106927045 C T SORCS3 Silent p.F613F 0.35 TCGA-EB-A6QY-01 10 117075198 117075198 C T ATRNL1 Missense_Mutation p.L997F 0.42 deleterious(0.03) possibly_damaging(0.854) TCGA-EB-A6QY-01 10 129903501 129903501 G A MKI67 Silent p.F2201F 0.37 TCGA-EB-A6QY-01 10 17891694 17891694 G A MRC1L1 Missense_Mutation p.R392K 0.24 benign(0.168) TCGA-EB-A6QY-01 10 18827157 18827157 G A CACNB2 Missense_Mutation p.E451K 0.43 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QY-01 10 28409144 28409144 G A MPP7 Missense_Mutation p.P289L 0.53 deleterious(0) possibly_damaging(0.742) TCGA-EB-A6QY-01 10 33137621 33137621 C T C10ORF68 Silent p.I533I 0.32 TCGA-EB-A6QY-01 10 35928840 35928840 G A FZD8 Silent p.S506S 0.31 TCGA-EB-A6QY-01 10 37442569 37442569 A C ANKRD30A Missense_Mutation p.K537Q 0.24 tolerated(0.56) benign(0.094) TCGA-EB-A6QY-01 10 50315700 50315700 G A VSTM4 Silent p.I132I 0.42 TCGA-EB-A6QY-01 10 52071085 52071085 C T SGMS1 Missense_Mutation p.G278R 0.36 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 10 54074331 54074331 C T DKK1 Missense_Mutation p.P46L 0.37 deleterious(0.03) benign(0.013) TCGA-EB-A6QY-01 10 5435701 5435701 C T TUBAL3 Missense_Mutation p.D374N 0.48 deleterious_low_confidence(0.01) benign(0.181) TCGA-EB-A6QY-01 10 5498608 5498608 T A NET1 Missense_Mutation p.L481Q 0.41 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 10 5951200 5951200 C T FBXO18 Silent p.L372L 0.42 TCGA-EB-A6QY-01 10 6483959 6483959 G A PRKCQ Missense_Mutation p.P578S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 10 92631694 92631694 G A RPP30 5'Flank 0.44 TCGA-EB-A6QY-01 10 95791377 95791377 G A PLCE1 Missense_Mutation p.E192K 0.40 tolerated_low_confidence(0.16) benign(0.002) TCGA-EB-A6QY-01 10 97127449 97127449 G A SORBS1 Missense_Mutation p.A638V 0.23 deleterious(0.01) benign(0.066) TCGA-EB-A6QY-01 10 98742090 98742090 C T C10orf12 Missense_Mutation p.P315S 0.43 deleterious(0.02) benign(0.22) TCGA-EB-A6QY-01 10 99640024 99640024 C T CRTAC1 Missense_Mutation p.D601N 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.61) TCGA-EB-A6QY-01 11 100061971 100061971 C T CNTN5 Missense_Mutation p.S565L 0.17 tolerated(0.17) benign(0.16) TCGA-EB-A6QY-01 11 10516501 10516501 G A AMPD3 Missense_Mutation p.G406E 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 11 108385014 108385014 C T EXPH5 Missense_Mutation p.R407K 0.33 tolerated(0.34) benign(0.061) TCGA-EB-A6QY-01 11 113103967 113103967 C T NCAM1 Missense_Mutation p.L590F 0.39 tolerated(0.22) probably_damaging(0.997) TCGA-EB-A6QY-01 11 118374090 118374090 C T KMT2A Missense_Mutation p.L2495F 0.52 possibly_damaging(0.732) TCGA-EB-A6QY-01 11 118773520 118773520 G A BCL9L Missense_Mutation p.P311L 0.55 possibly_damaging(0.908) TCGA-EB-A6QY-01 11 118978846 118978846 C T DPAGT1 5'UTR 0.15 TCGA-EB-A6QY-01 11 118978847 118978847 C T DPAGT1 5'UTR 0.15 TCGA-EB-A6QY-01 11 119063924 119063924 C T CCDC153 Missense_Mutation p.E96K 0.53 tolerated(1) benign(0.027) TCGA-EB-A6QY-01 11 120201160 120201160 C T TMEM136 Missense_Mutation p.A247V 0.47 tolerated(0.23) benign(0.017) TCGA-EB-A6QY-01 11 120769243 120769243 C T GRIK4 Silent p.I389I 0.38 TCGA-EB-A6QY-01 11 120823586 120823586 C T GRIK4 Missense_Mutation p.S538F 0.14 deleterious(0) possibly_damaging(0.87) TCGA-EB-A6QY-01 11 120823587 120823587 C T GRIK4 Silent p.S538S 0.13 TCGA-EB-A6QY-01 11 126110778 126110778 C T FAM118B Missense_Mutation p.P60S 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A6QY-01 11 1267247 1267247 G T MUC5B Missense_Mutation p.R3046M 0.19 unknown(0) TCGA-EB-A6QY-01 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.37 TCGA-EB-A6QY-01 11 20636294 20636294 C T SLC6A5 Missense_Mutation p.P352L 0.43 tolerated(0.13) benign(0.14) TCGA-EB-A6QY-01 11 2436581 2436581 C T TRPM5 Missense_Mutation p.E417K 0.46 tolerated(0.23) benign(0.002) TCGA-EB-A6QY-01 11 27114756 27114756 G A BBOX1 Missense_Mutation p.D126N 0.36 tolerated(0.27) benign(0.009) TCGA-EB-A6QY-01 11 4091302 4091302 C T STIM1 Silent p.I220I 0.41 TCGA-EB-A6QY-01 11 4388918 4388918 G A OR52B4 Missense_Mutation p.S203F 0.33 tolerated(0.77) benign(0.002) TCGA-EB-A6QY-01 11 4968024 4968024 C T OR51A4 Missense_Mutation p.E103K 0.20 deleterious(0.02) possibly_damaging(0.861) TCGA-EB-A6QY-01 11 55419106 55419106 G A OR4S2 Missense_Mutation p.A243T 0.37 tolerated(1) benign(0.09) TCGA-EB-A6QY-01 11 56949342 56949342 G T LRRC55 5'UTR 0.49 TCGA-EB-A6QY-01 11 57947751 57947751 G A OR9Q1 Missense_Mutation p.E279K 0.43 deleterious(0) benign(0.001) TCGA-EB-A6QY-01 11 57995562 57995562 G A OR10Q1 Silent p.L262L 0.42 TCGA-EB-A6QY-01 11 58477327 58477327 C T GLYAT Missense_Mutation p.S268N 0.23 tolerated(0.57) benign(0.005) TCGA-EB-A6QY-01 11 59422996 59422996 C T PATL1 Missense_Mutation p.R344K 0.64 tolerated(0.25) probably_damaging(0.992) TCGA-EB-A6QY-01 11 60561522 60561522 C T MS4A10 Silent p.L146L 0.43 TCGA-EB-A6QY-01 11 60635194 60635194 C T ZP1 Missense_Mutation p.P54S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 11 68517825 68517825 C T MTL5 Missense_Mutation p.E102K 0.55 deleterious_low_confidence(0.05) benign(0.02) TCGA-EB-A6QY-01 11 71259483 71259483 C T KRTAP5-9 5'UTR 0.67 TCGA-EB-A6QY-01 11 74800002 74800002 C T OR2AT4 Missense_Mutation p.V253M 0.49 deleterious(0) probably_damaging(0.978) TCGA-EB-A6QY-01 11 76872039 76872039 C T MYO7A Silent p.F407F 0.35 TCGA-EB-A6QY-01 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.28 tolerated(0.24) possibly_damaging(0.761) TCGA-EB-A6QY-01 12 104123926 104123926 C T STAB2 Silent p.I1705I 0.20 TCGA-EB-A6QY-01 12 106824097 106824097 C T POLR3B Missense_Mutation p.T437I 0.32 deleterious(0) probably_damaging(0.988) TCGA-EB-A6QY-01 12 110246110 110246110 C T TRPV4 Missense_Mutation p.E184K 0.35 deleterious(0.03) benign(0.098) TCGA-EB-A6QY-01 12 110641706 110641706 A T IFT81 Missense_Mutation p.Y532F 0.30 tolerated(0.05) benign(0.082) TCGA-EB-A6QY-01 12 118293309 118293309 C T KSR2 Silent p.E132E 0.19 TCGA-EB-A6QY-01 12 119592060 119592060 C T SRRM4 Silent p.P468P 0.26 TCGA-EB-A6QY-01 12 123482005 123482005 C T PITPNM2 Missense_Mutation p.G447S 0.33 tolerated(0.63) probably_damaging(0.999) TCGA-EB-A6QY-01 12 124323139 124323139 G A DNAH10 Missense_Mutation p.R1562K 0.09 probably_damaging(0.979) TCGA-EB-A6QY-01 12 124414273 124414273 C T DNAH10 Silent p.I4075I 0.43 TCGA-EB-A6QY-01 12 129558729 129558729 G A TMEM132D Silent p.F997F 0.26 TCGA-EB-A6QY-01 12 132688178 132688178 C T GALNT9 Missense_Mutation p.E13K 0.21 deleterious(0.03) benign(0.048) TCGA-EB-A6QY-01 12 15814976 15814976 C T EPS8 Missense_Mutation p.R265H 0.25 deleterious(0) benign(0.063) TCGA-EB-A6QY-01 12 2027417 2027417 C T CACNA2D4 Missense_Mutation p.E75K 0.17 deleterious(0.05) benign(0.104) TCGA-EB-A6QY-01 12 21172288 21172288 G A SLCO1B7 Missense_Mutation p.M64I 0.29 tolerated(0.33) benign(0.002) TCGA-EB-A6QY-01 12 21712081 21712081 C T GYS2 Missense_Mutation p.D418N 0.22 tolerated(0.2) benign(0) TCGA-EB-A6QY-01 12 2675610 2675610 C T CACNA1C Missense_Mutation p.R511W 0.45 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 12 2721228 2721228 G A CACNA1C Intron 0.24 TCGA-EB-A6QY-01 12 33559928 33559928 A C SYT10 Silent p.T291T 0.24 TCGA-EB-A6QY-01 12 41967294 41967294 C T PDZRN4 Missense_Mutation p.P905S 0.11 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QY-01 12 46243818 46243818 G A ARID2 Splice_Site p.X638_splice 0.25 TCGA-EB-A6QY-01 12 4722930 4722930 G A DYRK4 3'UTR 0.29 TCGA-EB-A6QY-01 12 47471132 47471132 C T AMIGO2 3'UTR 0.39 TCGA-EB-A6QY-01 12 49229976 49229976 G A DDX23 Missense_Mutation p.T437I 0.30 deleterious(0) probably_damaging(0.967) TCGA-EB-A6QY-01 12 49258632 49258632 C T RND1 Missense_Mutation p.E48K 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-EB-A6QY-01 12 49578721 49578721 G A TUBA1A 3'UTR 0.20 TCGA-EB-A6QY-01 12 5155026 5155026 G A KCNA5 Silent p.E571E 0.38 TCGA-EB-A6QY-01 12 51749610 51749610 C T GALNT6 Missense_Mutation p.E579K 0.24 deleterious(0.04) possibly_damaging(0.766) TCGA-EB-A6QY-01 12 53457201 53457201 G A TENC1 Missense_Mutation p.R1364K 0.31 tolerated(0.5) benign(0.006) TCGA-EB-A6QY-01 12 53586521 53586521 G A ITGB7 Silent p.L634L 0.35 TCGA-EB-A6QY-01 12 54396601 54396601 G A HOXC9 3'UTR 0.14 TCGA-EB-A6QY-01 12 55759766 55759766 G A OR6C75 Missense_Mutation p.R291K 0.27 deleterious_low_confidence(0.01) benign(0.301) TCGA-EB-A6QY-01 12 55863920 55863920 C T OR6C70 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.01) benign(0.291) TCGA-EB-A6QY-01 12 5848517 5848517 T A ANO2 Missense_Mutation p.Y463F 0.18 tolerated(0.07) probably_damaging(0.997) TCGA-EB-A6QY-01 12 6091156 6091156 G A VWF Silent p.A2361A 0.35 TCGA-EB-A6QY-01 12 65640146 65640146 G A LEMD3 3'UTR 0.27 TCGA-EB-A6QY-01 12 6782468 6782468 G A ZNF384 Silent p.I275I 0.33 TCGA-EB-A6QY-01 12 6806467 6806467 C T PIANP Missense_Mutation p.G170E 0.13 tolerated_low_confidence(0.11) probably_damaging(0.969) TCGA-EB-A6QY-01 12 6806468 6806468 C T PIANP Missense_Mutation p.G170R 0.12 tolerated_low_confidence(0.21) probably_damaging(0.98) TCGA-EB-A6QY-01 12 6859119 6859119 A T MLF2 Missense_Mutation p.S152T 0.34 deleterious(0) benign(0.349) TCGA-EB-A6QY-01 12 70066717 70066717 C T BEST3 Missense_Mutation p.G299E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 12 7302200 7302200 C T CLSTN3 Missense_Mutation p.P719L 0.31 deleterious(0.03) benign(0.033) TCGA-EB-A6QY-01 12 7632474 7632474 C T CD163 Silent p.G1154G 0.23 TCGA-EB-A6QY-01 12 7640269 7640269 C T CD163 Missense_Mutation p.R579K 0.24 tolerated(0.14) probably_damaging(0.997) TCGA-EB-A6QY-01 12 7654045 7654045 C T CD163 Silent p.K49K 0.27 TCGA-EB-A6QY-01 12 7848075 7848075 G A GDF3 Missense_Mutation p.R84C 0.24 deleterious(0) probably_damaging(0.977) TCGA-EB-A6QY-01 12 7867947 7867947 G A DPPA3 Missense_Mutation p.G84E 0.24 deleterious(0) probably_damaging(0.995) TCGA-EB-A6QY-01 12 7869769 7869769 G A DPPA3 3'UTR 0.33 TCGA-EB-A6QY-01 12 85680646 85680646 C T ALX1 Nonsense_Mutation p.R183* 0.24 TCGA-EB-A6QY-01 12 86198758 86198758 T G RASSF9 Missense_Mutation p.K344Q 0.12 tolerated(0.21) benign(0.096) TCGA-EB-A6QY-01 12 91502687 91502687 C T LUM Missense_Mutation p.D24N 0.22 tolerated(0.11) benign(0.003) TCGA-EB-A6QY-01 12 95867830 95867830 C T METAP2 5'UTR 0.24 TCGA-EB-A6QY-01 12 96077378 96077378 A T NTN4 Silent p.R430R 0.29 TCGA-EB-A6QY-01 13 111134961 111134961 G A COL4A2 Missense_Mutation p.G953R 0.45 possibly_damaging(0.732) TCGA-EB-A6QY-01 13 111134963 111134963 A G COL4A2 Silent p.G953G 0.44 TCGA-EB-A6QY-01 13 21006353 21006353 G A CRYL1 Missense_Mutation p.A174V 0.36 tolerated_low_confidence(0.07) benign(0.016) TCGA-EB-A6QY-01 13 25374621 25374621 C T RNF17 Silent p.I569I 0.21 TCGA-EB-A6QY-01 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.37 tolerated(0.2) benign(0.002) TCGA-EB-A6QY-01 13 32351572 32351572 C T RXFP2 Missense_Mutation p.S234F 0.38 deleterious(0) possibly_damaging(0.514) TCGA-EB-A6QY-01 13 53624248 53624248 C T OLFM4 Missense_Mutation p.P292L 0.41 deleterious(0) probably_damaging(0.986) TCGA-EB-A6QY-01 13 96599411 96599411 G A UGGT2 Silent p.F519F 0.37 TCGA-EB-A6QY-01 14 103601678 103601678 C T TNFAIP2 Missense_Mutation p.S649F 0.43 deleterious(0) probably_damaging(0.996) TCGA-EB-A6QY-01 14 105413034 105413034 G A AHNAK2 Silent p.V2918V 0.48 TCGA-EB-A6QY-01 14 106174431 106174431 G A IGHA1 Missense_Mutation p.P120S 0.23 tolerated(0.58) benign(0.006) TCGA-EB-A6QY-01 14 22294209 22294209 G A TRAV10 Missense_Mutation p.D105N 0.13 deleterious(0.02) possibly_damaging(0.907) TCGA-EB-A6QY-01 14 23511481 23511481 G A PSMB11 Missense_Mutation p.G16E 0.46 tolerated(0.35) benign(0) TCGA-EB-A6QY-01 14 24590672 24590672 C T DCAF11 Missense_Mutation p.H449Y 0.35 tolerated(0.92) benign(0.001) TCGA-EB-A6QY-01 14 25043576 25043576 C T CTSG Missense_Mutation p.D157N 0.43 tolerated(0.56) benign(0.053) TCGA-EB-A6QY-01 14 28734000 28734000 G A BNIP3P1 RNA 0.40 TCGA-EB-A6QY-01 14 30099986 30099986 G A PRKD1 Missense_Mutation p.P545L 0.38 tolerated(0.56) benign(0.002) TCGA-EB-A6QY-01 14 36841100 36841100 T A DPPA3P2 RNA 0.10 TCGA-EB-A6QY-01 14 64469451 64469451 C T SYNE2 Missense_Mutation p.S1267F 0.31 benign(0.176) TCGA-EB-A6QY-01 14 69522176 69522176 G A DCAF5 Silent p.V409V 0.19 TCGA-EB-A6QY-01 14 70171406 70171406 C T KIAA0247 Silent p.L135L 0.48 TCGA-EB-A6QY-01 14 71137803 71137803 G A TTC9 Silent p.V200V 0.32 TCGA-EB-A6QY-01 14 77294658 77294658 G A C14orf166B Missense_Mutation p.R38Q 0.38 tolerated(0.28) benign(0.001) TCGA-EB-A6QY-01 14 92920275 92920275 C T SLC24A4 Silent p.P304P 0.49 TCGA-EB-A6QY-01 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.36 TCGA-EB-A6QY-01 14 94912922 94912922 G A SERPINA11 Silent p.F221F 0.43 TCGA-EB-A6QY-01 15 101887907 101887907 C G PCSK6 Intron 0.10 TCGA-EB-A6QY-01 15 20170333 20170333 G A IGHV1OR15-9 Silent p.L8L 0.29 TCGA-EB-A6QY-01 15 20657727 20657727 G A HERC2P3 RNA 0.10 TCGA-EB-A6QY-01 15 23932116 23932116 C T NDN Silent p.P83P 0.35 TCGA-EB-A6QY-01 15 25299426 25299426 C T SNORD116-2 RNA 0.26 TCGA-EB-A6QY-01 15 25477438 25477438 C T SNORD115-33 3'Flank 0.22 TCGA-EB-A6QY-01 15 27128704 27128704 G C GABRA5 Missense_Mutation p.R166P 0.25 deleterious(0) probably_damaging(0.941) TCGA-EB-A6QY-01 15 33905547 33905547 C T RYR3 Silent p.F776F 0.12 TCGA-EB-A6QY-01 15 34065794 34065794 G A RYR3 Missense_Mutation p.G3039R 0.53 possibly_damaging(0.866) TCGA-EB-A6QY-01 15 43484963 43484963 A T CCNDBP1 Missense_Mutation p.I295L 0.25 tolerated(1) benign(0.281) TCGA-EB-A6QY-01 15 43815813 43815813 G A MAP1A Silent p.E714E 0.16 TCGA-EB-A6QY-01 15 49303951 49303951 G A SECISBP2L Missense_Mutation p.P614L 0.35 deleterious(0.04) benign(0.016) TCGA-EB-A6QY-01 15 50534838 50534838 C T HDC Silent p.R536R 0.25 TCGA-EB-A6QY-01 15 50544627 50544627 C T HDC Missense_Mutation p.M347I 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A6QY-01 15 54435225 54435225 T A UNC13C Silent p.S998S 0.22 TCGA-EB-A6QY-01 15 58465385 58465385 C G AQP9 Silent p.T119T 0.28 TCGA-EB-A6QY-01 15 65273318 65273318 C A SPG21 Missense_Mutation p.A37S 0.29 tolerated(0.43) benign(0.205) TCGA-EB-A6QY-01 15 67835639 67835639 C G MAP2K5 5'UTR 0.26 TCGA-EB-A6QY-01 15 72956900 72956900 G A GOLGA6B Intron 0.40 TCGA-EB-A6QY-01 15 75499397 75499397 C T C15orf39 Silent p.P336P 0.31 TCGA-EB-A6QY-01 15 79277318 79277318 G A RASGRF1 Intron 0.17 TCGA-EB-A6QY-01 15 90347591 90347591 C T ANPEP Missense_Mutation p.G358R 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 15 92988086 92988086 G A ST8SIA2 Missense_Mutation p.E257K 0.30 benign(0.244) TCGA-EB-A6QY-01 16 14972641 14972641 C T NOMO1 Missense_Mutation p.R903C 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 16 16110374 16110374 C T ABCC1 Missense_Mutation p.R171C 0.12 deleterious(0) probably_damaging(0.953) TCGA-EB-A6QY-01 16 18555041 18555041 G A NOMO2 Silent p.P211P 0.12 TCGA-EB-A6QY-01 16 19509341 19509341 G A TMC5 3'UTR 0.25 TCGA-EB-A6QY-01 16 1995507 1995507 G A RPL3L Missense_Mutation p.A387V 0.31 tolerated(0.07) benign(0.001) TCGA-EB-A6QY-01 16 20781352 20781352 G A ACSM3 5'UTR 0.33 TCGA-EB-A6QY-01 16 20976407 20976407 T A DNAH3 Silent p.V2933V 0.30 TCGA-EB-A6QY-01 16 21214509 21214509 G A ZP2 Missense_Mutation p.R346W 0.30 deleterious(0.02) benign(0.209) TCGA-EB-A6QY-01 16 22926948 22926948 G A HS3ST2 3'UTR 0.28 TCGA-EB-A6QY-01 16 23424780 23424780 C T COG7 Silent p.Q466Q 0.14 TCGA-EB-A6QY-01 16 28331516 28331516 C T SBK1 Silent p.F183F 0.22 TCGA-EB-A6QY-01 16 28488814 28488814 C T CLN3 3'UTR 0.24 TCGA-EB-A6QY-01 16 29994573 29994573 C T TAOK2 Missense_Mutation p.P394S 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.604) TCGA-EB-A6QY-01 16 3079316 3079316 C T CCDC64B Missense_Mutation p.E358K 0.16 tolerated(0.07) benign(0.161) TCGA-EB-A6QY-01 16 338149 338149 G A AXIN1 Silent p.I854I 0.29 TCGA-EB-A6QY-01 16 3487533 3487533 C T ZNF597 Missense_Mutation p.E56K 0.16 tolerated(0.17) benign(0.031) TCGA-EB-A6QY-01 16 3633497 3633497 G A SLX4 Missense_Mutation p.P1585L 0.26 tolerated(0.06) benign(0.387) TCGA-EB-A6QY-01 16 4731686 4731686 C T MGRN1 Silent p.L423L 0.34 TCGA-EB-A6QY-01 16 48119612 48119612 C T ABCC12 Missense_Mutation p.M1240I 0.26 tolerated(0.47) benign(0.009) TCGA-EB-A6QY-01 16 66643739 66643739 G A CMTM3 Intron 0.25 TCGA-EB-A6QY-01 16 66956215 66956215 C A RRAD Nonsense_Mutation p.E231* 0.28 TCGA-EB-A6QY-01 16 67577102 67577102 C T FAM65A Missense_Mutation p.R825C 0.40 deleterious(0) possibly_damaging(0.689) TCGA-EB-A6QY-01 16 67692883 67692883 G A ACD Missense_Mutation p.P284L 0.33 deleterious(0) possibly_damaging(0.835) TCGA-EB-A6QY-01 16 68026971 68026971 G A DPEP2 Missense_Mutation p.P49S 0.15 tolerated_low_confidence(0.16) benign(0.001) TCGA-EB-A6QY-01 16 69184445 69184445 A G CIRH1A Silent p.E248E 0.29 TCGA-EB-A6QY-01 16 70891749 70891749 G A HYDIN Missense_Mutation p.H4052Y 0.29 possibly_damaging(0.607) TCGA-EB-A6QY-01 16 72107825 72107825 G A HPR Missense_Mutation p.G14R 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A6QY-01 16 72142735 72142735 C T DHX38 Missense_Mutation p.P1098S 0.32 deleterious(0.02) probably_damaging(0.956) TCGA-EB-A6QY-01 16 81161541 81161541 G A PKD1L2 RNA 0.12 TCGA-EB-A6QY-01 16 823199 823199 T C MSLNL Missense_Mutation p.N690S 0.29 benign(0.444) TCGA-EB-A6QY-01 16 88722739 88722739 T A MVD Intron 0.34 TCGA-EB-A6QY-01 16 8891677 8891677 G A PMM2 5'UTR 0.25 TCGA-EB-A6QY-01 16 8987851 8987851 G A USP7 3'UTR 0.29 TCGA-EB-A6QY-01 17 10299769 10299769 C T MYH8 Missense_Mutation p.E1511K 0.21 deleterious(0.01) benign(0.11) TCGA-EB-A6QY-01 17 10300146 10300146 C T MYH8 Missense_Mutation p.D1446N 0.31 deleterious(0.02) benign(0.077) TCGA-EB-A6QY-01 17 10398257 10398257 C T MYH1 Silent p.L1819L 0.29 TCGA-EB-A6QY-01 17 12620673 12620673 C T MYOCD Missense_Mutation p.S63F 0.16 tolerated(0.76) benign(0.22) TCGA-EB-A6QY-01 17 16703667 16703667 C T CCDC144A 3'UTR 0.09 TCGA-EB-A6QY-01 17 18832139 18832139 G A PRPSAP2 Missense_Mutation p.D274N 0.38 tolerated(0.07) benign(0.016) TCGA-EB-A6QY-01 17 28652084 28652084 G A TMIGD1 Silent p.F130F 0.12 TCGA-EB-A6QY-01 17 30615924 30615924 C T RHBDL3 Silent p.I136I 0.38 TCGA-EB-A6QY-01 17 33998878 33998878 G A AP2B1 Missense_Mutation p.G713R 0.34 deleterious(0) possibly_damaging(0.887) TCGA-EB-A6QY-01 17 3513866 3513866 C T SHPK Silent p.Q475Q 0.34 TCGA-EB-A6QY-01 17 36462576 36462576 G - MRPL45 Frame_Shift_Del p.E147Kfs*6 0.20 TCGA-EB-A6QY-01 17 3655127 3655127 G A ITGAE Silent p.P570P 0.26 TCGA-EB-A6QY-01 17 36997544 36997544 C T C17orf98 Silent p.R33R 0.26 TCGA-EB-A6QY-01 17 37826546 37826546 G A PNMT Silent p.R251R 0.36 TCGA-EB-A6QY-01 17 37949117 37949117 C T IKZF3 Missense_Mutation p.G78E 0.29 tolerated(0.51) benign(0.005) TCGA-EB-A6QY-01 17 38182899 38182899 C A MED24 Splice_Site p.X603_splice 0.36 TCGA-EB-A6QY-01 17 39580269 39580269 G A KRT37 Intron 0.26 TCGA-EB-A6QY-01 17 39671621 39671621 C T KRT15 Intron 0.16 TCGA-EB-A6QY-01 17 3978583 3978583 G A ZZEF1 Silent p.F1125F 0.22 TCGA-EB-A6QY-01 17 40925451 40925451 G A VPS25 5'Flank 0.33 TCGA-EB-A6QY-01 17 40937303 40937303 C T WNK4 Silent p.L427L 0.12 TCGA-EB-A6QY-01 17 42335930 42335930 C T SLC4A1 Missense_Mutation p.G313D 0.32 tolerated(0.37) benign(0.017) TCGA-EB-A6QY-01 17 43922304 43922304 G A SPPL2C Missense_Mutation p.G11D 0.39 tolerated(0.23) benign(0.319) TCGA-EB-A6QY-01 17 48151560 48151560 C T ITGA3 Missense_Mutation p.S433F 0.41 deleterious(0) probably_damaging(0.994) TCGA-EB-A6QY-01 17 48437523 48437523 T A XYLT2 Silent p.A823A 0.10 TCGA-EB-A6QY-01 17 4859344 4859344 C T ENO3 Missense_Mutation p.P325S 0.33 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EB-A6QY-01 17 48596442 48596442 G A MYCBPAP Missense_Mutation p.D297N 0.38 tolerated(0.37) probably_damaging(0.969) TCGA-EB-A6QY-01 17 48703949 48703949 C T CACNA1G Missense_Mutation p.P2324L 0.31 tolerated_low_confidence(0.14) benign(0.003) TCGA-EB-A6QY-01 17 54671944 54671944 C T NOG Silent p.I120I 0.29 TCGA-EB-A6QY-01 17 56084664 56084664 G A SRSF1 5'UTR 0.40 TCGA-EB-A6QY-01 17 56342325 56342325 G A LPO Missense_Mutation p.M503I 0.17 tolerated(1) benign(0.004) TCGA-EB-A6QY-01 17 56386575 56386575 G A BZRAP1 Missense_Mutation p.S1353F 0.24 tolerated(0.07) benign(0.003) TCGA-EB-A6QY-01 17 58123502 58123502 A G HEATR6 Missense_Mutation p.I953T 0.34 tolerated(0.06) possibly_damaging(0.632) TCGA-EB-A6QY-01 17 59556032 59556032 C T TBX4 Silent p.I198I 0.32 TCGA-EB-A6QY-01 17 59560294 59560294 G A TBX4 Missense_Mutation p.R352Q 0.18 deleterious(0.03) possibly_damaging(0.544) TCGA-EB-A6QY-01 17 59962332 59962332 A G INTS2 Silent p.S681S 0.20 TCGA-EB-A6QY-01 17 60837289 60837289 G A MARCH10 Missense_Mutation p.P97S 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 17 61623020 61623020 C T KCNH6 Silent p.S914S 0.08 TCGA-EB-A6QY-01 17 66871429 66871429 G A ABCA8 Missense_Mutation p.L1495F 0.31 deleterious(0.01) possibly_damaging(0.846) TCGA-EB-A6QY-01 17 7017673 7017673 G A ASGR2 Intron 0.65 TCGA-EB-A6QY-01 17 76499049 76499049 G A DNAH17 Silent p.T1663T 0.37 TCGA-EB-A6QY-01 17 78032415 78032415 G A CCDC40 Missense_Mutation p.E428K 0.30 deleterious(0) benign(0.403) TCGA-EB-A6QY-01 17 80153149 80153149 C T CCDC57 Missense_Mutation p.R203Q 0.22 tolerated(0.19) benign(0) TCGA-EB-A6QY-01 18 25543412 25543412 C T CDH2 Missense_Mutation p.R808Q 0.25 deleterious(0) possibly_damaging(0.688) TCGA-EB-A6QY-01 18 28610986 28610986 T C DSC3 Missense_Mutation p.K103E 0.31 tolerated(0.61) benign(0.018) TCGA-EB-A6QY-01 18 29044289 29044289 C T DSG3 Silent p.I405I 0.26 TCGA-EB-A6QY-01 18 31226315 31226315 G A ASXL3 Missense_Mutation p.G118E 0.24 benign(0.04) TCGA-EB-A6QY-01 18 3164368 3164368 G A MYOM1 Missense_Mutation p.S470F 0.11 deleterious(0.01) probably_damaging(0.944) TCGA-EB-A6QY-01 18 335158 335158 C T COLEC12 Missense_Mutation p.G467E 0.06 deleterious(0) unknown(0) TCGA-EB-A6QY-01 18 47110128 47110128 G A LIPG Missense_Mutation p.G454R 0.15 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 18 50451649 50451649 C T DCC Silent p.S298S 0.28 TCGA-EB-A6QY-01 18 50929253 50929253 G A DCC Silent p.G975G 0.32 TCGA-EB-A6QY-01 18 55288939 55288939 C T NARS Splice_Site p.X4_splice 0.22 TCGA-EB-A6QY-01 18 56939713 56939713 C A RAX Silent p.T141T 0.31 TCGA-EB-A6QY-01 18 61310445 61310445 G A SERPINB4 Missense_Mutation p.H58Y 0.31 tolerated(0.17) possibly_damaging(0.466) TCGA-EB-A6QY-01 18 63477162 63477162 G A CDH7 Missense_Mutation p.D145N 0.28 deleterious(0) possibly_damaging(0.844) TCGA-EB-A6QY-01 18 76753956 76753956 G A SALL3 Silent p.S655S 0.11 TCGA-EB-A6QY-01 18 9936135 9936135 G T VAPA Silent p.P87P 0.31 TCGA-EB-A6QY-01 19 10473032 10473034 ACG CA TYK2 Frame_Shift_Del p.R527Gfs*12 0.21 TCGA-EB-A6QY-01 19 10883162 10883162 C T DNM2 Silent p.A81A 0.20 TCGA-EB-A6QY-01 19 12807456 12807456 C T FBXW9 5'UTR 0.17 TCGA-EB-A6QY-01 19 13216316 13216316 G A TRMT1 Missense_Mutation p.P563L 0.21 tolerated(0.16) benign(0.001) TCGA-EB-A6QY-01 19 14938300 14938300 A T OR7A5 Missense_Mutation p.Y252N 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A6QY-01 19 14938302 14938302 A T OR7A5 Missense_Mutation p.F251Y 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-EB-A6QY-01 19 15564297 15564297 C T RASAL3 Missense_Mutation p.G764E 0.25 tolerated(0.35) benign(0.023) TCGA-EB-A6QY-01 19 18943063 18943063 C T UPF1 Silent p.F15F 0.09 TCGA-EB-A6QY-01 19 19655436 19655436 G A CILP2 Silent p.E694E 0.26 TCGA-EB-A6QY-01 19 2037813 2037813 G A MKNK2 3'UTR 0.15 TCGA-EB-A6QY-01 19 21991433 21991433 A G ZNF43 Missense_Mutation p.L469P 0.11 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 19 24097745 24097745 T A ZNF726 5'UTR 0.14 TCGA-EB-A6QY-01 19 33703484 33703484 G A SLC7A10 Silent p.F190F 0.21 TCGA-EB-A6QY-01 19 34791575 34791575 C T KIAA0355 Missense_Mutation p.A66V 0.28 tolerated_low_confidence(0.33) benign(0.04) TCGA-EB-A6QY-01 19 34960190 34960190 A G UBA2 3'UTR 0.40 TCGA-EB-A6QY-01 19 35769649 35769649 C T USF2 Missense_Mutation p.S259L 0.18 deleterious(0) probably_damaging(0.993) TCGA-EB-A6QY-01 19 39949493 39949493 C T SUPT5H Missense_Mutation p.R119C 0.23 tolerated(0.18) benign(0.028) TCGA-EB-A6QY-01 19 40540260 40540260 G A ZNF780B 3'UTR 0.38 TCGA-EB-A6QY-01 19 40872586 40872586 G A PLD3 Missense_Mutation p.E33K 0.15 tolerated(0.05) benign(0.037) TCGA-EB-A6QY-01 19 41206328 41206328 G A ADCK4 Missense_Mutation p.R308W 0.28 deleterious(0.03) probably_damaging(0.96) TCGA-EB-A6QY-01 19 41727828 41727828 C T AXL Silent p.A151A 0.13 TCGA-EB-A6QY-01 19 42085690 42085690 G A CEACAM21 Intron 0.22 TCGA-EB-A6QY-01 19 42636553 42636553 G A POU2F2 Missense_Mutation p.S4F 0.23 tolerated_low_confidence(0.08) benign(0.113) TCGA-EB-A6QY-01 19 44377640 44377640 G A ZNF404 Silent p.P242P 0.36 TCGA-EB-A6QY-01 19 44515346 44515346 C T ZNF230 Silent p.V385V 0.34 TCGA-EB-A6QY-01 19 44832101 44832101 G A ZNF112 Missense_Mutation p.H743Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 19 46318870 46318870 G A SYMPK Missense_Mutation p.P1258L 0.21 deleterious_low_confidence(0) benign(0.007) TCGA-EB-A6QY-01 19 48978196 48978196 C T CYTH2 Silent p.L266L 0.26 TCGA-EB-A6QY-01 19 49090499 49090499 G A SULT2B1 Missense_Mutation p.M76I 0.24 tolerated(0.05) probably_damaging(0.981) TCGA-EB-A6QY-01 19 49967936 49967936 C T ALDH16A1 Silent p.S495S 0.32 TCGA-EB-A6QY-01 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.23 TCGA-EB-A6QY-01 19 50209359 50209359 C T CPT1C Silent p.P386P 0.28 TCGA-EB-A6QY-01 19 51140868 51140868 T A SYT3 5'UTR 0.40 TCGA-EB-A6QY-01 19 51361469 51361469 G A KLK3 Missense_Mutation p.E131K 0.31 tolerated(0.75) benign(0.011) TCGA-EB-A6QY-01 19 51527526 51527526 C T KLK11 Missense_Mutation p.E112K 0.37 tolerated(1) benign(0.018) TCGA-EB-A6QY-01 19 52023306 52023306 C T SIGLEC6 3'UTR 0.26 TCGA-EB-A6QY-01 19 52271931 52271931 C T FPR2 Missense_Mutation p.T7I 0.25 tolerated(1) benign(0.001) TCGA-EB-A6QY-01 19 52399744 52399744 G A ZNF649 Silent p.I73I 0.18 TCGA-EB-A6QY-01 19 52448724 52448724 C T ZNF613 Missense_Mutation p.H530Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-EB-A6QY-01 19 52919816 52919816 C T ZNF528 Missense_Mutation p.H571Y 0.22 deleterious(0) possibly_damaging(0.649) TCGA-EB-A6QY-01 19 53304755 53304755 C T ZNF28 Missense_Mutation p.E115K 0.17 tolerated(0.98) benign(0.021) TCGA-EB-A6QY-01 19 53381433 53381433 T A ZNF320 3'UTR 0.16 TCGA-EB-A6QY-01 19 53884968 53884968 G A ZNF525 Missense_Mutation p.G379E 0.29 deleterious(0.01) benign(0.035) TCGA-EB-A6QY-01 19 54515526 54515526 C T CACNG6 3'UTR 0.34 TCGA-EB-A6QY-01 19 55741856 55741856 G A PPP6R1 3'UTR 0.26 TCGA-EB-A6QY-01 19 56321157 56321157 G A NLRP11 Silent p.F273F 0.37 TCGA-EB-A6QY-01 19 56321383 56321383 C T NLRP11 Missense_Mutation p.S198N 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A6QY-01 19 56701769 56701769 G A ZSCAN5B Silent p.S305S 0.29 TCGA-EB-A6QY-01 19 56701771 56701771 A T ZSCAN5B Missense_Mutation p.S305T 0.29 tolerated(0.85) possibly_damaging(0.676) TCGA-EB-A6QY-01 19 56934906 56934906 G A ZNF583 Silent p.E293E 0.14 TCGA-EB-A6QY-01 19 57086093 57086093 C T ZNF470 Silent p.L92L 0.13 TCGA-EB-A6QY-01 19 58153404 58153404 C T ZNF211 Missense_Mutation p.S582F 0.21 tolerated(0.26) possibly_damaging(0.88) TCGA-EB-A6QY-01 19 58477955 58477955 G A C19orf18 Missense_Mutation p.S105L 0.23 deleterious(0.01) possibly_damaging(0.776) TCGA-EB-A6QY-01 19 5904923 5904923 C T VMAC Nonsense_Mutation p.Q8* 0.30 TCGA-EB-A6QY-01 19 6919597 6919597 G A EMR1 Missense_Mutation p.E487K 0.21 deleterious(0) benign(0.259) TCGA-EB-A6QY-01 19 8152832 8152832 C T FBN3 Splice_Site p.X2166_splice 0.23 TCGA-EB-A6QY-01 19 8661969 8661969 G A ADAMTS10 Silent p.F314F 0.17 TCGA-EB-A6QY-01 19 8841397 8841397 G A OR2Z1 Missense_Mutation p.D3N 0.15 tolerated(0.57) benign(0.001) TCGA-EB-A6QY-01 19 9048527 9048527 G A MUC16 Missense_Mutation p.S11035L 0.20 benign(0.092) TCGA-EB-A6QY-01 19 9063836 9063836 G A MUC16 Silent p.S7870S 0.14 TCGA-EB-A6QY-01 19 9065699 9065699 C T MUC16 Silent p.R7249R 0.18 TCGA-EB-A6QY-01 19 9084569 9084569 G A MUC16 Missense_Mutation p.P2416S 0.22 unknown(0) TCGA-EB-A6QY-01 19 9091606 9091606 G A MUC16 Missense_Mutation p.S70L 0.18 unknown(0) TCGA-EB-A6QY-01 19 9237580 9237580 C T OR7G3 Missense_Mutation p.G16E 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-EB-A6QY-01 1 101200091 101200091 C A VCAM1 Missense_Mutation p.P609H 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 1 10228307 10228307 C T UBE4B Silent p.V1104V 0.38 TCGA-EB-A6QY-01 1 103354435 103354435 G A COL11A1 Missense_Mutation p.P1502L 0.26 unknown(0) TCGA-EB-A6QY-01 1 10403317 10403317 C T KIF1B Silent p.F1174F 0.08 TCGA-EB-A6QY-01 1 10479790 10479790 C T PGD Missense_Mutation p.S479L 0.12 deleterious(0) benign(0.285) TCGA-EB-A6QY-01 1 10715808 10715808 G A CASZ1 Silent p.S521S 0.31 TCGA-EB-A6QY-01 1 110030330 110030330 C T ATXN7L2 Missense_Mutation p.P202S 0.28 tolerated(0.12) benign(0.005) TCGA-EB-A6QY-01 1 112042488 112042488 C T ADORA3 Intron 0.08 TCGA-EB-A6QY-01 1 112999875 112999875 T C CTTNBP2NL Silent p.P587P 0.24 TCGA-EB-A6QY-01 1 11575526 11575526 G A PTCHD2 Silent p.L518L 0.15 TCGA-EB-A6QY-01 1 117311124 117311124 G A CD2 Missense_Mutation p.E259K 0.40 tolerated(0.49) benign(0.065) TCGA-EB-A6QY-01 1 119474373 119474373 G A TBX15 5'UTR 0.28 TCGA-EB-A6QY-01 1 120301771 120301771 G A HMGCS2 Missense_Mutation p.R274C 0.27 tolerated(0.27) probably_damaging(0.99) TCGA-EB-A6QY-01 1 12034841 12034841 C T PLOD1 Silent p.I720I 0.28 TCGA-EB-A6QY-01 1 12919980 12919980 C T PRAMEF2 Silent p.S240S 0.20 TCGA-EB-A6QY-01 1 13497756 13497756 C T PRAMEF16 Silent p.L351L 0.25 TCGA-EB-A6QY-01 1 13940211 13940211 G A PDPN Missense_Mutation p.V197I 0.16 tolerated(0.27) benign(0.053) TCGA-EB-A6QY-01 1 150459936 150459936 T G TARS2 Missense_Mutation p.Y4D 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.493) TCGA-EB-A6QY-01 1 151070470 151070470 C T GABPB2 Missense_Mutation p.T205I 0.07 deleterious(0.02) benign(0.066) TCGA-EB-A6QY-01 1 151105749 151105749 G A SEMA6C Silent p.S700S 0.12 TCGA-EB-A6QY-01 1 151140650 151140650 T A SCNM1 Silent p.L143L 0.10 TCGA-EB-A6QY-01 1 151372152 151372152 C T PSMB4 Missense_Mutation p.S30F 0.24 deleterious(0.03) benign(0.059) TCGA-EB-A6QY-01 1 151372153 151372153 C T PSMB4 Silent p.S30S 0.24 TCGA-EB-A6QY-01 1 152058366 152058366 C T TCHHL1 Missense_Mutation p.G598R 0.30 tolerated(0.52) benign(0.104) TCGA-EB-A6QY-01 1 152193161 152193161 C A HRNR Missense_Mutation p.G315V 0.24 unknown(0) TCGA-EB-A6QY-01 1 152279710 152279710 T G FLG Missense_Mutation p.Q2551P 0.24 probably_damaging(0.968) TCGA-EB-A6QY-01 1 152285476 152285476 C T FLG Missense_Mutation p.G629E 0.37 possibly_damaging(0.78) TCGA-EB-A6QY-01 1 153042991 153042991 C T SPRR2B 3'UTR 0.29 TCGA-EB-A6QY-01 1 153177332 153177332 A G LELP1 Missense_Mutation p.E50G 0.35 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-EB-A6QY-01 1 153963240 153963240 T A RPS27 5'UTR 0.40 TCGA-EB-A6QY-01 1 154919033 154919033 C T PBXIP1 Missense_Mutation p.E373K 0.21 tolerated(0.62) benign(0.086) TCGA-EB-A6QY-01 1 154919034 154919034 C T PBXIP1 Silent p.R372R 0.21 TCGA-EB-A6QY-01 1 155204987 155204987 G A GBA Missense_Mutation p.R502C 0.10 deleterious(0) possibly_damaging(0.759) TCGA-EB-A6QY-01 1 155204988 155204988 G T GBA Missense_Mutation p.N501K 0.10 deleterious(0) probably_damaging(0.997) TCGA-EB-A6QY-01 1 156509680 156509680 C T IQGAP3 Missense_Mutation p.E948K 0.09 deleterious(0.02) benign(0.019) TCGA-EB-A6QY-01 1 156643249 156643249 G A NES Nonsense_Mutation p.Q327* 0.34 TCGA-EB-A6QY-01 1 157504315 157504315 G A FCRL5 Intron 0.20 TCGA-EB-A6QY-01 1 15813918 15813918 G A CELA2B Missense_Mutation p.D260N 0.26 tolerated(0.08) benign(0.02) TCGA-EB-A6QY-01 1 158325852 158325852 G A CD1E Silent p.V287V 0.09 TCGA-EB-A6QY-01 1 158914763 158914763 C T PYHIN1 Silent p.T430T 0.33 TCGA-EB-A6QY-01 1 162351633 162351633 C T C1orf226 Intron 0.37 TCGA-EB-A6QY-01 1 165860484 165860484 T A UCK2 Missense_Mutation p.I94N 0.37 deleterious(0) probably_damaging(0.994) TCGA-EB-A6QY-01 1 16935123 16935123 G A NBPF1 5'UTR 0.08 TCGA-EB-A6QY-01 1 169391536 169391536 C T CCDC181 Missense_Mutation p.E45K 0.15 tolerated(0.05) probably_damaging(0.948) TCGA-EB-A6QY-01 1 16957416 16957416 G A CROCCP2 RNA 0.12 TCGA-EB-A6QY-01 1 170521301 170521301 T C GORAB Silent p.L295L 0.15 TCGA-EB-A6QY-01 1 170695443 170695443 C T PRRX1 Missense_Mutation p.S167F 0.16 deleterious(0.04) possibly_damaging(0.809) TCGA-EB-A6QY-01 1 171083457 171083457 C T FMO3 Missense_Mutation p.P380S 0.37 tolerated(0.07) possibly_damaging(0.859) TCGA-EB-A6QY-01 1 173499181 173499181 T A SLC9C2 Missense_Mutation p.I726L 0.35 tolerated(0.78) benign(0.007) TCGA-EB-A6QY-01 1 17690103 17690103 G A PADI4 Silent p.K615K 0.38 TCGA-EB-A6QY-01 1 177249650 177249650 C T BRINP2 Silent p.P446P 0.10 TCGA-EB-A6QY-01 1 178848039 178848039 A C RALGPS2 Missense_Mutation p.I250L 0.19 tolerated(1) benign(0.001) TCGA-EB-A6QY-01 1 180217425 180217425 C T LHX4 Missense_Mutation p.P28S 0.26 deleterious(0.03) benign(0.078) TCGA-EB-A6QY-01 1 181768005 181768005 C T CACNA1E 3'UTR 0.20 TCGA-EB-A6QY-01 1 196438179 196438179 A T KCNT2 Missense_Mutation p.I135N 0.20 deleterious(0) benign(0.394) TCGA-EB-A6QY-01 1 196883754 196883754 C T CFHR4 Missense_Mutation p.S436F 0.28 deleterious(0) possibly_damaging(0.554) TCGA-EB-A6QY-01 1 201046051 201046051 G A CACNA1S Silent p.F608F 0.19 TCGA-EB-A6QY-01 1 201869748 201869748 C T LMOD1 Silent p.K131K 0.32 TCGA-EB-A6QY-01 1 202403897 202403897 G A PPP1R12B Splice_Site p.X418_splice 0.17 TCGA-EB-A6QY-01 1 203015082 203015082 T G PPFIA4 Missense_Mutation p.N31K 0.19 deleterious(0.03) possibly_damaging(0.46) TCGA-EB-A6QY-01 1 20440448 20440448 G A PLA2G2D 3'UTR 0.21 TCGA-EB-A6QY-01 1 204970377 204970377 C T NFASC Silent p.F1033F 0.26 TCGA-EB-A6QY-01 1 204985639 204985639 C T NFASC Missense_Mutation p.P1232L 0.25 deleterious(0) unknown(0) TCGA-EB-A6QY-01 1 20517502 20517502 C T UBXN10 Nonsense_Mutation p.Q150* 0.33 TCGA-EB-A6QY-01 1 207263650 207263650 C T C4BPB Intron 0.25 TCGA-EB-A6QY-01 1 207760774 207760774 G A CR1 Silent p.T1858T 0.08 TCGA-EB-A6QY-01 1 20945011 20945011 G A CDA Missense_Mutation p.E131K 0.35 deleterious(0.02) benign(0.028) TCGA-EB-A6QY-01 1 21011497 21011497 G A KIF17 Missense_Mutation p.S679L 0.20 tolerated_low_confidence(0.42) benign(0.001) TCGA-EB-A6QY-01 1 21133714 21133714 G T EIF4G3 3'UTR 0.35 TCGA-EB-A6QY-01 1 213032220 213032220 C T FLVCR1 Silent p.T142T 0.14 TCGA-EB-A6QY-01 1 21599381 21599381 C T ECE1 Missense_Mutation p.E102K 0.26 tolerated(0.21) benign(0.023) TCGA-EB-A6QY-01 1 220870079 220870079 G A C1orf115 3'UTR 0.32 TCGA-EB-A6QY-01 1 235324299 235324299 T A RBM34 Missense_Mutation p.E46V 0.33 tolerated(0.05) benign(0.041) TCGA-EB-A6QY-01 1 235324598 235324598 C T RBM34 5'UTR 0.16 TCGA-EB-A6QY-01 1 235715233 235715233 G A GNG4 3'UTR 0.14 TCGA-EB-A6QY-01 1 243493840 243493840 A T SDCCAG8 Splice_Site p.X357_splice 0.36 TCGA-EB-A6QY-01 1 247004266 247004266 G A AHCTF1 Missense_Mutation p.P2224S 0.38 deleterious(0) probably_damaging(0.939) TCGA-EB-A6QY-01 1 247582028 247582028 C T NLRP3 5'UTR 0.31 TCGA-EB-A6QY-01 1 247587978 247587978 C T NLRP3 Silent p.I411I 0.28 TCGA-EB-A6QY-01 1 247729254 247729254 C T GCSAML Missense_Mutation p.S54F 0.45 deleterious(0.04) benign(0.17) TCGA-EB-A6QY-01 1 248004680 248004680 C T OR11L1 Silent p.Q173Q 0.30 TCGA-EB-A6QY-01 1 2492999 2492999 C T TNFRSF14 Intron 0.33 TCGA-EB-A6QY-01 1 27057849 27057849 C T ARID1A Silent p.S519S 0.30 TCGA-EB-A6QY-01 1 27089606 27089606 T G ARID1A Silent p.P854P 0.12 TCGA-EB-A6QY-01 1 27089607 27089607 C T ARID1A Missense_Mutation p.P855S 0.12 unknown(0) TCGA-EB-A6QY-01 1 27661929 27661929 C T TMEM222 Missense_Mutation p.T200I 0.24 tolerated(0.29) benign(0.003) TCGA-EB-A6QY-01 1 27661930 27661930 C T TMEM222 Silent p.T200T 0.23 TCGA-EB-A6QY-01 1 2938261 2938261 C T ACTRT2 Missense_Mutation p.P4L 0.22 tolerated(0.09) benign(0.017) TCGA-EB-A6QY-01 1 31346055 31346055 C T SDC3 3'UTR 0.21 TCGA-EB-A6QY-01 1 32202036 32202036 G A BAI2 Intron 0.27 TCGA-EB-A6QY-01 1 32202037 32202037 G A BAI2 Intron 0.27 TCGA-EB-A6QY-01 1 33366906 33366906 C T TMEM54 5'UTR 0.47 TCGA-EB-A6QY-01 1 33366907 33366907 C T TMEM54 5'UTR 0.47 TCGA-EB-A6QY-01 1 34209185 34209185 G A CSMD2 Silent p.T583T 0.11 TCGA-EB-A6QY-01 1 36809543 36809543 G A STK40 Missense_Mutation p.R308W 0.26 deleterious(0) possibly_damaging(0.79) TCGA-EB-A6QY-01 1 36821017 36821017 G A STK40 Silent p.I120I 0.31 TCGA-EB-A6QY-01 1 37346257 37346257 G A GRIK3 Silent p.T176T 0.29 TCGA-EB-A6QY-01 1 40092578 40092578 C T HEYL Silent p.L196L 0.14 TCGA-EB-A6QY-01 1 40735762 40735762 T A ZMPSTE24 Missense_Mutation p.F197Y 0.13 tolerated(0.1) benign(0.042) TCGA-EB-A6QY-01 1 41107390 41107390 G A RIMS3 Missense_Mutation p.P70S 0.22 tolerated_low_confidence(1) benign(0.006) TCGA-EB-A6QY-01 1 42671524 42671524 G A FOXJ3 Missense_Mutation p.P180L 0.35 deleterious(0.02) possibly_damaging(0.709) TCGA-EB-A6QY-01 1 43855557 43855557 C T SZT2 5'Flank 0.23 TCGA-EB-A6QY-01 1 46978221 46978221 G A DMBX1 3'UTR 0.27 TCGA-EB-A6QY-01 1 46978222 46978222 T A DMBX1 3'UTR 0.25 TCGA-EB-A6QY-01 1 47046283 47046283 G A MKNK1 Silent p.T51T 0.26 TCGA-EB-A6QY-01 1 57480770 57480770 C T DAB1 Missense_Mutation p.M410I 0.31 tolerated(0.48) benign(0.001) TCGA-EB-A6QY-01 1 6209093 6209093 C T CHD5 Missense_Mutation p.E402K 0.18 deleterious(0.04) benign(0.061) TCGA-EB-A6QY-01 1 66098964 66098964 C T LEPR Intron 0.44 TCGA-EB-A6QY-01 1 75055120 75055120 T A C1orf173 Intron 0.37 TCGA-EB-A6QY-01 1 75055654 75055654 C T C1orf173 Missense_Mutation p.E613K 0.30 tolerated(0.18) benign(0.109) TCGA-EB-A6QY-01 1 75699774 75699774 C T SLC44A5 Silent p.T250T 0.37 TCGA-EB-A6QY-01 1 78024411 78024411 C T AK5 3'UTR 0.46 TCGA-EB-A6QY-01 1 78325006 78325006 A T FAM73A Missense_Mutation p.M375L 0.24 tolerated(1) benign(0.01) TCGA-EB-A6QY-01 1 9018991 9018991 C T CA6 Missense_Mutation p.S144F 0.33 deleterious(0) probably_damaging(0.963) TCGA-EB-A6QY-01 1 92789933 92789933 G A RPAP2 Splice_Site p.X485_splice 0.28 TCGA-EB-A6QY-01 20 1559139 1559139 G A RP4-576H24.4 Missense_Mutation p.S92L 0.17 deleterious(0.01) possibly_damaging(0.609) TCGA-EB-A6QY-01 20 22562904 22562904 C T FOXA2 Missense_Mutation p.G326R 0.27 tolerated(0.52) benign(0.143) TCGA-EB-A6QY-01 20 30898119 30898119 C T KIF3B Missense_Mutation p.S180F 0.42 deleterious(0) probably_damaging(0.983) TCGA-EB-A6QY-01 20 33447399 33447399 G A GGT7 Silent p.R287R 0.15 TCGA-EB-A6QY-01 20 36932735 36932735 C T BPI Missense_Mutation p.S41F 0.41 deleterious(0) probably_damaging(0.979) TCGA-EB-A6QY-01 20 43048392 43048392 G A HNF4A Silent p.P256P 0.28 TCGA-EB-A6QY-01 20 44538245 44538245 G A PLTP Missense_Mutation p.S132F 0.19 tolerated(0.06) benign(0.139) TCGA-EB-A6QY-01 20 44685136 44685136 G A SLC12A5 Missense_Mutation p.A1038T 0.17 tolerated(0.17) benign(0.022) TCGA-EB-A6QY-01 20 48600606 48600606 C T SNAI1 Missense_Mutation p.P110S 0.45 tolerated(0.31) benign(0.002) TCGA-EB-A6QY-01 20 49224966 49224966 C T FAM65C Missense_Mutation p.E302K 0.08 deleterious(0) probably_damaging(0.995) TCGA-EB-A6QY-01 20 50225140 50225140 G A ATP9A Missense_Mutation p.P888S 0.43 deleterious(0) possibly_damaging(0.904) TCGA-EB-A6QY-01 20 55111330 55111330 G A FAM209B Missense_Mutation p.E118K 0.20 tolerated(0.16) benign(0.122) TCGA-EB-A6QY-01 20 56285569 56285569 G A PMEPA1 5'Flank 0.19 TCGA-EB-A6QY-01 20 58342363 58342363 G A PHACTR3 Missense_Mutation p.E222K 0.12 tolerated(0.52) benign(0.341) TCGA-EB-A6QY-01 20 5933142 5933142 C T MCM8 Missense_Mutation p.P74L 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 20 60884836 60884836 G A LAMA5 Silent p.T3628T 0.20 TCGA-EB-A6QY-01 20 62701677 62701677 C T TCEA2 Silent p.S194S 0.20 TCGA-EB-A6QY-01 20 853495 853495 G A ANGPT4 3'UTR 0.43 TCGA-EB-A6QY-01 21 10908843 10908843 G A TPTE Missense_Mutation p.S501F 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-EB-A6QY-01 21 33065634 33065634 G A SCAF4 Missense_Mutation p.P496S 0.31 possibly_damaging(0.901) TCGA-EB-A6QY-01 21 35821832 35821832 G A KCNE1 Missense_Mutation p.S34F 0.31 deleterious(0.03) benign(0.033) TCGA-EB-A6QY-01 21 41301048 41301048 C T PCP4 3'UTR 0.33 TCGA-EB-A6QY-01 21 42720628 42720628 C T FAM3B Missense_Mutation p.P199S 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 21 43277345 43277345 G A PRDM15 Silent p.F441F 0.23 TCGA-EB-A6QY-01 21 44152052 44152052 C T PDE9A Silent p.I145I 0.38 TCGA-EB-A6QY-01 21 46896340 46896340 G A COL18A1 Missense_Mutation p.E472K 0.26 unknown(0) TCGA-EB-A6QY-01 21 46900687 46900687 G C COL18A1 Missense_Mutation p.G689A 0.08 possibly_damaging(0.899) TCGA-EB-A6QY-01 22 17280810 17280810 C T XKR3 Missense_Mutation p.R147K 0.26 tolerated(0.94) possibly_damaging(0.694) TCGA-EB-A6QY-01 22 17308674 17308674 C T HSFY1P1 RNA 0.12 TCGA-EB-A6QY-01 22 17589202 17589202 C T IL17RA Silent p.L365L 0.12 TCGA-EB-A6QY-01 22 18301532 18301532 G A MICAL3 Nonsense_Mutation p.Q1299* 0.12 TCGA-EB-A6QY-01 22 19393353 19393353 A T HIRA Missense_Mutation p.V118E 0.33 tolerated(0.06) possibly_damaging(0.899) TCGA-EB-A6QY-01 22 25625439 25625439 C T CRYBB2 Missense_Mutation p.P115S 0.23 tolerated(0.24) benign(0.08) TCGA-EB-A6QY-01 22 26997985 26997985 C T CRYBB1 Missense_Mutation p.D145N 0.23 deleterious(0.02) benign(0.04) TCGA-EB-A6QY-01 22 26997986 26997986 C T CRYBB1 Splice_Site p.X145_splice 0.22 TCGA-EB-A6QY-01 22 29445491 29445491 C T ZNRF3 Missense_Mutation p.S441F 0.26 deleterious(0.02) probably_damaging(0.929) TCGA-EB-A6QY-01 22 30780445 30780445 G A RNF215 Silent p.S209S 0.26 TCGA-EB-A6QY-01 22 30780446 30780446 G A RNF215 Missense_Mutation p.S209F 0.26 tolerated(0.72) possibly_damaging(0.822) TCGA-EB-A6QY-01 22 30888078 30888078 C T SEC14L4 Silent p.G243G 0.21 TCGA-EB-A6QY-01 22 31283578 31283578 G A OSBP2 Missense_Mutation p.A425T 0.23 tolerated(0.35) benign(0.003) TCGA-EB-A6QY-01 22 31484557 31484557 G A SMTN Missense_Mutation p.E87K 0.34 deleterious(0) probably_damaging(0.987) TCGA-EB-A6QY-01 22 31854531 31854531 G A EIF4ENIF1 Missense_Mutation p.P298L 0.36 deleterious(0.01) possibly_damaging(0.691) TCGA-EB-A6QY-01 22 36889817 36889817 G A FOXRED2 Missense_Mutation p.P553L 0.24 tolerated(0.39) benign(0.003) TCGA-EB-A6QY-01 22 37414441 37414441 C T TST Silent p.R111R 0.35 TCGA-EB-A6QY-01 22 39448686 39448686 G A APOBEC3F Missense_Mutation p.E370K 0.29 tolerated(0.62) benign(0.12) TCGA-EB-A6QY-01 22 41924413 41924413 C T POLR3H 3'UTR 0.32 TCGA-EB-A6QY-01 22 45309837 45309837 G A PHF21B Silent p.I232I 0.29 TCGA-EB-A6QY-01 22 45312478 45312478 G A PHF21B Silent p.L82L 0.35 TCGA-EB-A6QY-01 22 46327050 46327050 G A WNT7B Silent p.F166F 0.28 TCGA-EB-A6QY-01 22 50216833 50216833 G A BRD1 Missense_Mutation p.S378F 0.09 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 22 50941845 50941845 G A LMF2 Missense_Mutation p.S700L 0.43 tolerated(0.18) benign(0.005) TCGA-EB-A6QY-01 2 103090133 103090133 G A SLC9A4 5'UTR 0.30 TCGA-EB-A6QY-01 2 103149105 103149105 G A SLC9A4 Silent p.R785R 0.35 TCGA-EB-A6QY-01 2 107052681 107052681 C T RGPD3 Silent p.L552L 0.24 TCGA-EB-A6QY-01 2 108488520 108488520 G A RGPD4 Missense_Mutation p.E1354K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QY-01 2 111921785 111921785 C T BCL2L11 Missense_Mutation p.R192C 0.31 deleterious(0) probably_damaging(0.991) TCGA-EB-A6QY-01 2 113993096 113993096 G A PAX8 Missense_Mutation p.P321L 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-EB-A6QY-01 2 113993097 113993097 G A PAX8 Missense_Mutation p.P321S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A6QY-01 2 11593719 11593719 A T E2F6 Missense_Mutation p.H123Q 0.13 tolerated(0.12) probably_damaging(0.968) TCGA-EB-A6QY-01 2 120395918 120395918 C T PCDP1 Silent p.P686P 0.15 TCGA-EB-A6QY-01 2 121745792 121745792 C T GLI2 Silent p.L768L 0.27 TCGA-EB-A6QY-01 2 130877993 130877993 G A POTEF Silent p.F32F 0.35 TCGA-EB-A6QY-01 2 136479565 136479565 C A R3HDM1 Missense_Mutation p.P950T 0.39 tolerated(1) benign(0.003) TCGA-EB-A6QY-01 2 141130601 141130601 C T LRP1B Missense_Mutation p.E3582K 0.12 possibly_damaging(0.621) TCGA-EB-A6QY-01 2 148733484 148733484 T A ORC4 Missense_Mutation p.E15V 0.42 deleterious_low_confidence(0) benign(0.279) TCGA-EB-A6QY-01 2 152695712 152695712 G A CACNB4 Missense_Mutation p.S495L 0.27 deleterious_low_confidence(0.05) benign(0.034) TCGA-EB-A6QY-01 2 160714933 160714933 T C LY75-CD302 Missense_Mutation p.I775V 0.19 tolerated(0.2) benign(0.007) TCGA-EB-A6QY-01 2 163003868 163003868 C T GCG Silent p.R83R 0.18 TCGA-EB-A6QY-01 2 167298082 167298082 C T SCN7A Missense_Mutation p.D661N 0.39 tolerated(0.4) benign(0.094) TCGA-EB-A6QY-01 2 168105658 168105658 G A XIRP2 Missense_Mutation p.E2586K 0.40 benign(0.014) TCGA-EB-A6QY-01 2 17696727 17696727 C T RAD51AP2 Missense_Mutation p.E986K 0.35 tolerated(0.1) benign(0.136) TCGA-EB-A6QY-01 2 179439478 179439478 C T TTN Missense_Mutation p.G23794E 0.31 TCGA-EB-A6QY-01 2 179452278 179452278 C T TTN Missense_Mutation p.G21253E 0.23 TCGA-EB-A6QY-01 2 179569015 179569015 G A TTN Missense_Mutation p.L10028F 0.30 TCGA-EB-A6QY-01 2 179611630 179611630 G A TTN Intron 0.19 TCGA-EB-A6QY-01 2 185802974 185802974 C T ZNF804A Missense_Mutation p.P951S 0.22 tolerated(0.16) probably_damaging(0.992) TCGA-EB-A6QY-01 2 188223969 188223969 G A CALCRL Missense_Mutation p.A271V 0.25 deleterious(0) possibly_damaging(0.587) TCGA-EB-A6QY-01 2 197172675 197172675 C T HECW2 Missense_Mutation p.E857K 0.20 deleterious(0) benign(0.434) TCGA-EB-A6QY-01 2 197183520 197183520 C T HECW2 Silent p.Q698Q 0.17 TCGA-EB-A6QY-01 2 197674109 197674109 C T C2orf66 Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.18) benign(0.001) TCGA-EB-A6QY-01 2 201719762 201719762 G A CLK1 Missense_Mutation p.L411F 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A6QY-01 2 203407041 203407041 C T BMPR2 Silent p.S428S 0.34 TCGA-EB-A6QY-01 2 203620288 203620288 C T FAM117B Missense_Mutation p.P330S 0.16 tolerated(0.08) possibly_damaging(0.526) TCGA-EB-A6QY-01 2 208986558 208986558 G A CRYGD Missense_Mutation p.H122Y 0.14 tolerated(0.36) benign(0.015) TCGA-EB-A6QY-01 2 21225002 21225002 T C APOB Missense_Mutation p.N4431S 0.19 benign(0) TCGA-EB-A6QY-01 2 21227269 21227269 G A APOB Missense_Mutation p.H3987Y 0.30 possibly_damaging(0.516) TCGA-EB-A6QY-01 2 21228550 21228550 G A APOB Silent p.F3730F 0.14 TCGA-EB-A6QY-01 2 21235463 21235463 A T APOB Missense_Mutation p.L1426Q 0.17 probably_damaging(0.998) TCGA-EB-A6QY-01 2 215809747 215809747 A G ABCA12 Missense_Mutation p.S2441P 0.31 deleterious(0.01) possibly_damaging(0.739) TCGA-EB-A6QY-01 2 218954016 218954016 C T RUFY4 Missense_Mutation p.S535F 0.20 deleterious(0) possibly_damaging(0.823) TCGA-EB-A6QY-01 2 219558670 219558670 C T STK36 Missense_Mutation p.S767F 0.23 deleterious(0) possibly_damaging(0.841) TCGA-EB-A6QY-01 2 220044923 220044923 C T FAM134A Missense_Mutation p.H171Y 0.29 tolerated(0.97) probably_damaging(0.995) TCGA-EB-A6QY-01 2 228153880 228153880 C T COL4A3 Missense_Mutation p.P966S 0.42 unknown(0) TCGA-EB-A6QY-01 2 228860234 228860234 C T SPHKAP Missense_Mutation p.R1542Q 0.33 deleterious(0.04) benign(0.048) TCGA-EB-A6QY-01 2 231135334 231135334 G A SP140 Missense_Mutation p.G493E 0.14 tolerated(0.12) possibly_damaging(0.566) TCGA-EB-A6QY-01 2 231404082 231404082 C T SP100 Missense_Mutation p.S732F 0.31 tolerated(0.05) benign(0) TCGA-EB-A6QY-01 2 231404083 231404083 C T SP100 Silent p.S732S 0.32 TCGA-EB-A6QY-01 2 232079626 232079626 G A ARMC9 Missense_Mutation p.R87Q 0.35 tolerated(0.13) benign(0.408) TCGA-EB-A6QY-01 2 232389930 232389930 C T NMUR1 Missense_Mutation p.E369K 0.31 tolerated(0.14) benign(0.008) TCGA-EB-A6QY-01 2 232393552 232393552 G A NMUR1 Silent p.F60F 0.11 TCGA-EB-A6QY-01 2 233245457 233245457 C T ALPP Silent p.L330L 0.27 TCGA-EB-A6QY-01 2 233756081 233756081 T C NGEF Missense_Mutation p.K420R 0.35 deleterious(0) possibly_damaging(0.811) TCGA-EB-A6QY-01 2 233756082 233756082 T A NGEF Nonsense_Mutation p.K420* 0.35 TCGA-EB-A6QY-01 2 238257018 238257018 C T COL6A3 Missense_Mutation p.G2314R 0.34 unknown(0) TCGA-EB-A6QY-01 2 238259780 238259780 C T COL6A3 Missense_Mutation p.G2270E 0.06 unknown(0) TCGA-EB-A6QY-01 2 238296802 238296802 G A COL6A3 Silent p.F245F 0.23 TCGA-EB-A6QY-01 2 238785922 238785922 C T RAMP1 Missense_Mutation p.R37W 0.34 deleterious(0.01) possibly_damaging(0.476) TCGA-EB-A6QY-01 2 27449086 27449086 G T CAD Nonsense_Mutation p.E644* 0.38 TCGA-EB-A6QY-01 2 27730158 27730158 A G GCKR Missense_Mutation p.K375E 0.10 tolerated(1) benign(0.006) TCGA-EB-A6QY-01 2 31010032 31010032 C T CAPN13 Missense_Mutation p.E54K 0.17 tolerated(0.77) benign(0.044) TCGA-EB-A6QY-01 2 36668569 36668569 G A CRIM1 Missense_Mutation p.G225E 0.23 deleterious(0.01) possibly_damaging(0.476) TCGA-EB-A6QY-01 2 38956698 38956698 G A GALM Missense_Mutation p.G212E 0.28 deleterious(0) probably_damaging(0.948) TCGA-EB-A6QY-01 2 39008901 39008901 C T GEMIN6 Missense_Mutation p.P124L 0.15 tolerated(0.3) benign(0.002) TCGA-EB-A6QY-01 2 39944346 39944346 G A TMEM178A Silent p.R283R 0.20 TCGA-EB-A6QY-01 2 45651 45651 G A FAM110C Silent p.T245T 0.37 TCGA-EB-A6QY-01 2 51254859 51254859 G A NRXN1 Missense_Mutation p.R185C 0.26 deleterious(0.05) benign(0.371) TCGA-EB-A6QY-01 2 54876311 54876311 A T SPTBN1 Missense_Mutation p.D1729V 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 2 55200318 55200318 G A RTN4 Missense_Mutation p.P1185S 0.21 deleterious(0) probably_damaging(0.979) TCGA-EB-A6QY-01 2 61189966 61189966 G A PUS10 Silent p.F261F 0.17 TCGA-EB-A6QY-01 2 61610449 61610449 G A USP34 Missense_Mutation p.P259L 0.28 tolerated(0.16) benign(0.43) TCGA-EB-A6QY-01 2 66670075 66670075 C T MEIS1 Silent p.S175S 0.24 TCGA-EB-A6QY-01 2 73118518 73118518 C A SPR Missense_Mutation p.S213Y 0.21 deleterious(0) possibly_damaging(0.822) TCGA-EB-A6QY-01 2 74042590 74042590 G A C2orf78 Missense_Mutation p.E414K 0.30 tolerated(0.14) benign(0.058) TCGA-EB-A6QY-01 2 76975930 76975930 G A LRRTM4 Missense_Mutation p.P555L 0.21 tolerated_low_confidence(0.25) benign(0) TCGA-EB-A6QY-01 2 86434315 86434315 C T MRPL35 Silent p.P81P 0.29 TCGA-EB-A6QY-01 2 88367411 88367411 G A SMYD1 Missense_Mutation p.E10K 0.12 tolerated(0.11) benign(0.012) TCGA-EB-A6QY-01 2 95945693 95945693 G A PROM2 Missense_Mutation p.D459N 0.25 deleterious(0) probably_damaging(0.991) TCGA-EB-A6QY-01 3 101177837 101177837 G A SENP7 Silent p.I82I 0.27 TCGA-EB-A6QY-01 3 108353762 108353762 C T DZIP3 Silent p.F287F 0.29 TCGA-EB-A6QY-01 3 108788535 108788535 G A MORC1 Silent p.F253F 0.23 TCGA-EB-A6QY-01 3 114057944 114057944 C T ZBTB20 Missense_Mutation p.G712R 0.32 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-EB-A6QY-01 3 119134553 119134553 G A ARHGAP31 Silent p.K1259K 0.37 TCGA-EB-A6QY-01 3 121641968 121641968 G A SLC15A2 Missense_Mutation p.D317N 0.26 deleterious(0) possibly_damaging(0.838) TCGA-EB-A6QY-01 3 121707244 121707244 G A ILDR1 Silent p.S537S 0.25 TCGA-EB-A6QY-01 3 122001020 122001020 G A CASR Missense_Mutation p.G567R 0.27 deleterious(0.04) benign(0.33) TCGA-EB-A6QY-01 3 122001021 122001021 G A CASR Missense_Mutation p.G567E 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-EB-A6QY-01 3 123014946 123014946 G A ADCY5 Silent p.F1016F 0.09 TCGA-EB-A6QY-01 3 129694684 129694684 G A TRH Missense_Mutation p.A9T 0.44 tolerated(0.2) benign(0.072) TCGA-EB-A6QY-01 3 130095080 130095080 G A COL6A5 Missense_Mutation p.G23E 0.20 tolerated(0.36) benign(0.002) TCGA-EB-A6QY-01 3 130464009 130464009 A C PIK3R4 Missense_Mutation p.S18R 0.34 tolerated(0.11) benign(0.328) TCGA-EB-A6QY-01 3 133099670 133099670 C T TMEM108 Missense_Mutation p.S372F 0.33 deleterious(0.03) benign(0.011) TCGA-EB-A6QY-01 3 151166543 151166543 G A IGSF10 Missense_Mutation p.P409L 0.32 tolerated(0.19) benign(0.002) TCGA-EB-A6QY-01 3 154889936 154889936 G A MME Missense_Mutation p.E671K 0.30 tolerated(0.59) benign(0.006) TCGA-EB-A6QY-01 3 155203370 155203370 G A PLCH1 Missense_Mutation p.P925S 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 3 158980379 158980379 C T IQCJ-SCHIP1 Silent p.P66P 0.22 TCGA-EB-A6QY-01 3 160958945 160958945 C T NMD3 Silent p.L289L 0.17 TCGA-EB-A6QY-01 3 169574279 169574279 G A LRRC31 Missense_Mutation p.P223L 0.30 tolerated(0.37) benign(0.013) TCGA-EB-A6QY-01 3 182987826 182987826 G A B3GNT5 Silent p.K80K 0.24 TCGA-EB-A6QY-01 3 183368980 183368980 C T KLHL24 Missense_Mutation p.P279L 0.12 tolerated(0.06) benign(0.062) TCGA-EB-A6QY-01 3 184295192 184295192 C T EPHB3 Silent p.S472S 0.32 TCGA-EB-A6QY-01 3 187003629 187003629 T A MASP1 Missense_Mutation p.E74V 0.12 deleterious(0) benign(0.03) TCGA-EB-A6QY-01 3 195488399 195488399 G A MUC4 Missense_Mutation p.P4857L 0.28 possibly_damaging(0.908) TCGA-EB-A6QY-01 3 197670664 197670664 T C IQCG Silent p.R89R 0.22 TCGA-EB-A6QY-01 3 32411396 32411396 C T CMTM8 Silent p.T153T 0.46 TCGA-EB-A6QY-01 3 3887871 3887871 G A LRRN1 Missense_Mutation p.V516I 0.38 tolerated(0.07) possibly_damaging(0.651) TCGA-EB-A6QY-01 3 39225864 39225864 G A XIRP1 Silent p.N1691N 0.35 TCGA-EB-A6QY-01 3 39307635 39307635 G A CX3CR1 Silent p.V154V 0.55 TCGA-EB-A6QY-01 3 44763673 44763673 G A ZNF502 Missense_Mutation p.R455K 0.16 deleterious(0.03) probably_damaging(0.949) TCGA-EB-A6QY-01 3 49060173 49060173 C T NDUFAF3 Silent p.S103S 0.41 TCGA-EB-A6QY-01 3 49060174 49060174 C T NDUFAF3 Missense_Mutation p.L104F 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-EB-A6QY-01 3 52476303 52476303 G A SEMA3G Silent p.F119F 0.30 TCGA-EB-A6QY-01 3 52540858 52540858 A T STAB1 Missense_Mutation p.I661F 0.45 deleterious(0) benign(0.126) TCGA-EB-A6QY-01 3 52775445 52775445 T A NEK4 Missense_Mutation p.D692V 0.42 deleterious(0) probably_damaging(0.939) TCGA-EB-A6QY-01 3 52848273 52848273 G A ITIH4 Missense_Mutation p.L860F 0.25 tolerated(0.36) benign(0.052) TCGA-EB-A6QY-01 3 58178401 58178401 G A DNASE1L3 3'UTR 0.37 TCGA-EB-A6QY-01 3 66502032 66502032 C T LRIG1 Missense_Mutation p.A106T 0.46 tolerated(0.49) benign(0.004) TCGA-EB-A6QY-01 3 67568738 67568738 C T SUCLG2 Missense_Mutation p.G198E 0.08 deleterious(0) probably_damaging(0.997) TCGA-EB-A6QY-01 3 72890269 72890269 G A SHQ1 Missense_Mutation p.S138L 0.39 deleterious(0.03) benign(0.027) TCGA-EB-A6QY-01 3 97467544 97467544 G A EPHA6 Silent p.%3D 0.14 TCGA-EB-A6QY-01 3 97852232 97852232 G A OR5H1 Missense_Mutation p.D231N 0.25 tolerated(0.34) benign(0.102) TCGA-EB-A6QY-01 4 100208729 100208729 G A ADH1A Missense_Mutation p.R38C 0.24 deleterious(0.04) benign(0.377) TCGA-EB-A6QY-01 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.24 probably_damaging(1) TCGA-EB-A6QY-01 4 103556037 103556037 G A MANBA Missense_Mutation p.L775F 0.20 deleterious(0.03) benign(0.167) TCGA-EB-A6QY-01 4 104027372 104027372 G A CENPE 3'UTR 0.31 TCGA-EB-A6QY-01 4 110932525 110932525 G A EGF Missense_Mutation p.E1180K 0.32 deleterious_low_confidence(0.04) benign(0.002) TCGA-EB-A6QY-01 4 11401099 11401099 G A HS3ST1 Silent p.F177F 0.17 TCGA-EB-A6QY-01 4 119951779 119951779 C T SYNPO2 Missense_Mutation p.P617S 0.27 deleterious(0.04) possibly_damaging(0.905) TCGA-EB-A6QY-01 4 120072152 120072152 T A MYOZ2 Missense_Mutation p.Y68N 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 4 122068286 122068286 C T TNIP3 Missense_Mutation p.R295Q 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-EB-A6QY-01 4 123854603 123854625 TATGGAAATTAATGAAGAAGAAC - SPATA5 Frame_Shift_Del p.M153Dfs*49 0.25 TCGA-EB-A6QY-01 4 126370128 126370128 G A FAT4 Missense_Mutation p.E2653K 0.26 benign(0.021) TCGA-EB-A6QY-01 4 126373088 126373088 G A FAT4 Silent p.Q3639Q 0.29 TCGA-EB-A6QY-01 4 143033749 143033749 A G INPP4B Missense_Mutation p.V741A 0.22 deleterious(0) possibly_damaging(0.72) TCGA-EB-A6QY-01 4 154626166 154626166 C T TLR2 Missense_Mutation p.L703F 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 4 156618049 156618049 G A GUCY1A3 Silent p.K10K 0.43 TCGA-EB-A6QY-01 4 158065067 158065067 C T GLRB Missense_Mutation p.S287F 0.48 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QY-01 4 15841660 15841660 G A CD38 Missense_Mutation p.S224N 0.24 tolerated(0.13) probably_damaging(0.965) TCGA-EB-A6QY-01 4 1807569 1807569 G C FGFR3 Missense_Mutation p.D582H 0.11 deleterious(0.01) benign(0.179) TCGA-EB-A6QY-01 4 183713475 183713475 G A TENM3 Missense_Mutation p.D1884N 0.47 deleterious(0.02) possibly_damaging(0.821) TCGA-EB-A6QY-01 4 185550514 185550514 G A CASP3 Missense_Mutation p.S249F 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-EB-A6QY-01 4 20620574 20620574 C T SLIT2 Missense_Mutation p.S1511F 0.30 deleterious(0) probably_damaging(0.994) TCGA-EB-A6QY-01 4 23815899 23815899 C T PPARGC1A Missense_Mutation p.E403K 0.34 tolerated(0.44) benign(0.313) TCGA-EB-A6QY-01 4 25378924 25378924 G A ANAPC4 5'UTR 0.30 TCGA-EB-A6QY-01 4 3494982 3494982 G A DOK7 Silent p.Q423Q 0.34 TCGA-EB-A6QY-01 4 679663 679663 G A MFSD7 Silent p.S182S 0.25 TCGA-EB-A6QY-01 4 70346451 70346451 G A UGT2B4 Silent p.F496F 0.31 TCGA-EB-A6QY-01 4 71201164 71201164 C T CABS1 Silent p.S136S 0.26 TCGA-EB-A6QY-01 4 76489822 76489822 G A C4orf26 3'Flank 0.30 TCGA-EB-A6QY-01 4 76523295 76523295 G A CDKL2 Missense_Mutation p.S329F 0.14 tolerated(0.07) benign(0.418) TCGA-EB-A6QY-01 4 7677815 7677815 C T SORCS2 Silent p.F400F 0.40 TCGA-EB-A6QY-01 4 77817420 77817420 C T SOWAHB Missense_Mutation p.R528Q 0.30 deleterious(0.01) benign(0.238) TCGA-EB-A6QY-01 4 79188074 79188074 C T FRAS1 Silent p.P258P 0.31 TCGA-EB-A6QY-01 4 82013572 82013572 C G PRKG2 Missense_Mutation p.A721P 0.29 tolerated(0.28) possibly_damaging(0.451) TCGA-EB-A6QY-01 4 82073145 82073145 C T PRKG2 Missense_Mutation p.G352R 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 4 83349429 83349429 A C HNRNPDL Splice_Site p.X204_splice 0.26 TCGA-EB-A6QY-01 4 83557880 83557880 C T SCD5 Silent p.L222L 0.35 TCGA-EB-A6QY-01 4 8584333 8584333 G A GPR78 Silent p.A248A 0.25 TCGA-EB-A6QY-01 4 86898 86898 C T Z95704.2 RNA 0.30 TCGA-EB-A6QY-01 5 101774462 101774462 G A SLCO6A1 Silent p.L379L 0.18 TCGA-EB-A6QY-01 5 115361802 115361802 G T AQPEP Missense_Mutation p.R987M 0.12 deleterious(0) possibly_damaging(0.503) TCGA-EB-A6QY-01 5 129070703 129070703 G A ADAMTS19 Missense_Mutation p.E1125K 0.22 tolerated(0.07) possibly_damaging(0.665) TCGA-EB-A6QY-01 5 1335173 1335173 G T CLPTM1L Missense_Mutation p.F265L 0.22 tolerated(0.61) benign(0.004) TCGA-EB-A6QY-01 5 135610433 135610433 G A TRPC7 Silent p.F352F 0.18 TCGA-EB-A6QY-01 5 13719166 13719166 G A DNAH5 Silent p.F4108F 0.26 TCGA-EB-A6QY-01 5 13727678 13727678 G A DNAH5 Missense_Mutation p.L3991F 0.12 possibly_damaging(0.849) TCGA-EB-A6QY-01 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.19 TCGA-EB-A6QY-01 5 137781055 137781055 G A REEP2 Missense_Mutation p.E184K 0.17 tolerated(0.06) benign(0.069) TCGA-EB-A6QY-01 5 13824400 13824400 G A DNAH5 Missense_Mutation p.R2163W 0.19 possibly_damaging(0.898) TCGA-EB-A6QY-01 5 140168101 140168101 C T PCDHA1 Silent p.S742S 0.17 TCGA-EB-A6QY-01 5 140242889 140242889 C T AC005609.1 Silent p.Q29Q 0.17 TCGA-EB-A6QY-01 5 140257298 140257298 T C PCDHA12 Silent p.S747S 0.18 TCGA-EB-A6QY-01 5 140308635 140308635 C T PCDHAC1 Missense_Mutation p.R720C 0.20 tolerated(0.13) benign(0.002) TCGA-EB-A6QY-01 5 140348896 140348896 G A PCDHAC2 Missense_Mutation p.E849K 0.22 tolerated(0.7) benign(0.011) TCGA-EB-A6QY-01 5 140432572 140432572 C T PCDHB1 Missense_Mutation p.S506F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 5 140558604 140558604 G A PCDHB8 Missense_Mutation p.G330E 0.10 deleterious_low_confidence(0.03) benign(0.149) TCGA-EB-A6QY-01 5 140562543 140562543 G A PCDHB16 Missense_Mutation p.E137K 0.17 tolerated_low_confidence(0.06) benign(0.066) TCGA-EB-A6QY-01 5 140711179 140711179 G A PCDHGA1 Missense_Mutation p.E310K 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EB-A6QY-01 5 149212551 149212551 C T PPARGC1B Silent p.P305P 0.24 TCGA-EB-A6QY-01 5 149433614 149433614 C T CSF1R 3'UTR 0.31 TCGA-EB-A6QY-01 5 149433615 149433615 T A CSF1R 3'UTR 0.29 TCGA-EB-A6QY-01 5 149449540 149449540 T A CSF1R Missense_Mutation p.Q469L 0.18 deleterious(0.01) benign(0.1) TCGA-EB-A6QY-01 5 150276384 150276384 C T ZNF300 Silent p.E155E 0.15 TCGA-EB-A6QY-01 5 150578631 150578631 C T CCDC69 Silent p.R82R 0.19 TCGA-EB-A6QY-01 5 150723809 150723809 G A SLC36A2 Missense_Mutation p.H62Y 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 5 151784662 151784662 C T NMUR2 Missense_Mutation p.E5K 0.17 tolerated(0.12) benign(0.004) TCGA-EB-A6QY-01 5 156741465 156741465 G A CYFIP2 Missense_Mutation p.M382I 0.13 tolerated(0.21) benign(0.152) TCGA-EB-A6QY-01 5 160753430 160753430 G A GABRB2 Missense_Mutation p.T379I 0.24 tolerated(0.36) benign(0.003) TCGA-EB-A6QY-01 5 167841479 167841479 C T WWC1 Silent p.F356F 0.30 TCGA-EB-A6QY-01 5 176942259 176942259 G A DDX41 Missense_Mutation p.A191V 0.25 tolerated(0.14) benign(0.272) TCGA-EB-A6QY-01 5 177022285 177022285 C T TMED9 Silent p.F192F 0.20 TCGA-EB-A6QY-01 5 178541139 178541139 G A ADAMTS2 Missense_Mutation p.T1122I 0.16 deleterious(0.02) possibly_damaging(0.512) TCGA-EB-A6QY-01 5 180424481 180424481 G A BTNL3 Silent p.L222L 0.31 TCGA-EB-A6QY-01 5 205679 205679 G A CCDC127 Silent p.I172I 0.16 TCGA-EB-A6QY-01 5 23527429 23527429 G A PRDM9 Silent p.G744G 0.19 TCGA-EB-A6QY-01 5 24488044 24488044 G A CDH10 Missense_Mutation p.R699W 0.19 deleterious(0) probably_damaging(0.993) TCGA-EB-A6QY-01 5 24537739 24537739 G A CDH10 Silent p.I92I 0.10 TCGA-EB-A6QY-01 5 35066012 35066012 C T PRLR Missense_Mutation p.G350S 0.23 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 5 36226646 36226646 G A NADK2 Missense_Mutation p.R137C 0.20 deleterious(0) probably_damaging(0.983) TCGA-EB-A6QY-01 5 41018492 41018492 C T MROH2B Missense_Mutation p.R905K 0.27 deleterious(0) probably_damaging(0.99) TCGA-EB-A6QY-01 5 41181595 41181595 C T C6 Missense_Mutation p.E265K 0.20 tolerated(0.83) benign(0) TCGA-EB-A6QY-01 5 42565979 42565979 G A GHR Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-EB-A6QY-01 5 434558 434558 C T AHRR Missense_Mutation p.T590I 0.16 deleterious(0.02) possibly_damaging(0.66) TCGA-EB-A6QY-01 5 52404428 52404428 G A MOCS2 5'UTR 0.16 TCGA-EB-A6QY-01 5 74016474 74016474 G A HEXB Silent p.R505R 0.15 TCGA-EB-A6QY-01 5 79031486 79031486 G A CMYA5 Missense_Mutation p.E2300K 0.22 probably_damaging(0.956) TCGA-EB-A6QY-01 5 81613845 81613845 G A ATP6AP1L Missense_Mutation p.R134Q 0.18 tolerated(1) benign(0.011) TCGA-EB-A6QY-01 5 82834175 82834175 G A VCAN Missense_Mutation p.E1785K 0.16 tolerated(0.37) benign(0.293) TCGA-EB-A6QY-01 5 88056823 88056823 G A MEF2C Silent p.I146I 0.16 TCGA-EB-A6QY-01 5 89981652 89981652 C T GPR98 Silent p.I2110I 0.15 TCGA-EB-A6QY-01 5 98216817 98216817 G A CHD1 Missense_Mutation p.P1008L 0.19 deleterious(0.02) benign(0.014) TCGA-EB-A6QY-01 6 100382375 100382375 C T MCHR2 Silent p.T202T 0.25 TCGA-EB-A6QY-01 6 102307351 102307351 C T GRIK2 Missense_Mutation p.R503C 0.24 deleterious(0) possibly_damaging(0.826) TCGA-EB-A6QY-01 6 117121854 117121854 C T GPRC6A Missense_Mutation p.E481K 0.16 tolerated(0.43) benign(0.345) TCGA-EB-A6QY-01 6 117724304 117724304 C T ROS1 Missense_Mutation p.G192E 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 6 12120187 12120187 C T HIVEP1 Silent p.I53I 0.29 TCGA-EB-A6QY-01 6 127771005 127771005 G A KIAA0408 Silent p.S180S 0.22 TCGA-EB-A6QY-01 6 131225641 131225641 G A EPB41L2 Missense_Mutation p.P298L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 6 133048119 133048119 A T VNN3 Intron 0.12 TCGA-EB-A6QY-01 6 133070914 133070914 G A VNN2 Missense_Mutation p.L431F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 6 135768299 135768299 C T AHI1 Splice_Site p.X543_splice 0.29 TCGA-EB-A6QY-01 6 136901482 136901482 G A MAP3K5 Silent p.I1158I 0.25 TCGA-EB-A6QY-01 6 152621832 152621832 G A SYNE1 Missense_Mutation p.P5876S 0.29 probably_damaging(0.999) TCGA-EB-A6QY-01 6 155450761 155450761 G A TIAM2 Missense_Mutation p.G135E 0.26 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EB-A6QY-01 6 155451261 155451261 C T TIAM2 Silent p.L302L 0.22 TCGA-EB-A6QY-01 6 155732481 155732481 C T NOX3 Nonsense_Mutation p.W441* 0.29 TCGA-EB-A6QY-01 6 159181711 159181711 G A SYTL3 Missense_Mutation p.E450K 0.23 deleterious(0) possibly_damaging(0.881) TCGA-EB-A6QY-01 6 159653023 159653023 G A FNDC1 Silent p.V493V 0.31 TCGA-EB-A6QY-01 6 159653480 159653480 G A FNDC1 Missense_Mutation p.D646N 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-EB-A6QY-01 6 160240152 160240152 G A PNLDC1 Missense_Mutation p.D467N 0.44 tolerated(0.59) benign(0.149) TCGA-EB-A6QY-01 6 160471585 160471585 C T IGF2R Silent p.L865L 0.23 TCGA-EB-A6QY-01 6 161139847 161139847 C T PLG Missense_Mutation p.S358F 0.32 deleterious(0.04) benign(0.015) TCGA-EB-A6QY-01 6 167753838 167753838 C T TTLL2 Silent p.T150T 0.14 TCGA-EB-A6QY-01 6 24786076 24786076 C T GMNN 3'UTR 0.29 TCGA-EB-A6QY-01 6 28053558 28053558 C T ZNF165 Silent p.I100I 0.21 TCGA-EB-A6QY-01 6 28333859 28333859 G A ZKSCAN3 Missense_Mutation p.E472K 0.27 tolerated(0.15) benign(0.137) TCGA-EB-A6QY-01 6 30955860 30955860 T A MUC21 Silent p.P530P 0.26 TCGA-EB-A6QY-01 6 32187988 32187988 G A NOTCH4 Silent p.P411P 0.29 TCGA-EB-A6QY-01 6 33371118 33371118 C T KIFC1 Missense_Mutation p.P93L 0.25 tolerated(0.07) benign(0.394) TCGA-EB-A6QY-01 6 35980105 35980105 G A SLC26A8 Missense_Mutation p.P78L 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 6 37600798 37600798 G A MDGA1 3'UTR 0.25 TCGA-EB-A6QY-01 6 38802408 38802408 G A DNAH8 Silent p.Q1235Q 0.24 TCGA-EB-A6QY-01 6 43127542 43127542 C T PTK7 Missense_Mutation p.R972C 0.27 deleterious(0) probably_damaging(0.988) TCGA-EB-A6QY-01 6 43250912 43250912 G A TTBK1 Missense_Mutation p.D812N 0.62 probably_damaging(0.99) TCGA-EB-A6QY-01 6 47649280 47649280 G A GPR111 Missense_Mutation p.E329K 0.31 deleterious(0.05) possibly_damaging(0.856) TCGA-EB-A6QY-01 6 47650309 47650309 G A GPR111 Missense_Mutation p.D672N 0.11 tolerated(0.13) benign(0.024) TCGA-EB-A6QY-01 6 49574607 49574607 C T RHAG Missense_Mutation p.G389E 0.12 tolerated(0.07) possibly_damaging(0.849) TCGA-EB-A6QY-01 6 49578814 49578814 G A RHAG Silent p.V330V 0.14 TCGA-EB-A6QY-01 6 50682897 50682897 C T TFAP2D Silent p.S36S 0.28 TCGA-EB-A6QY-01 6 52054165 52054165 C T IL17A 3'UTR 0.20 TCGA-EB-A6QY-01 6 52697654 52697654 C T GSTA5 Intron 0.25 TCGA-EB-A6QY-01 6 57512666 57512666 G A PRIM2 3'UTR 0.07 TCGA-EB-A6QY-01 6 656720 656720 G A HUS1B Silent p.L75L 0.14 TCGA-EB-A6QY-01 6 70639578 70639578 G A COL19A1 Missense_Mutation p.G218S 0.16 tolerated(0.55) unknown(0) TCGA-EB-A6QY-01 6 70935679 70935679 G A COL9A1 Missense_Mutation p.P846L 0.12 probably_damaging(0.975) TCGA-EB-A6QY-01 6 70948979 70948979 C T COL9A1 Missense_Mutation p.G697E 0.12 probably_damaging(1) TCGA-EB-A6QY-01 6 72889418 72889418 A T RIMS1 Silent p.V204V 0.28 TCGA-EB-A6QY-01 6 75844494 75844494 G A COL12A1 Silent p.S1824S 0.31 TCGA-EB-A6QY-01 6 76419319 76419319 C T SENP6 Silent p.V931V 0.22 TCGA-EB-A6QY-01 6 78172544 78172544 C T HTR1B Missense_Mutation p.E193K 0.33 tolerated(0.71) benign(0.108) TCGA-EB-A6QY-01 7 100172588 100172588 G A LRCH4 3'UTR 0.25 TCGA-EB-A6QY-01 7 100212784 100212784 C T MOSPD3 Missense_Mutation p.T229I 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A6QY-01 7 100280640 100280640 G A GIGYF1 Nonsense_Mutation p.R803* 0.26 TCGA-EB-A6QY-01 7 100281485 100281485 G A GIGYF1 Missense_Mutation p.S642L 0.25 deleterious(0) unknown(0) TCGA-EB-A6QY-01 7 103038419 103038419 C T SLC26A5 Missense_Mutation p.E311K 0.19 tolerated(0.39) benign(0.243) TCGA-EB-A6QY-01 7 105662855 105662855 C T CDHR3 Silent p.V679V 0.12 TCGA-EB-A6QY-01 7 107601010 107601010 C T LAMB1 Missense_Mutation p.E732K 0.08 tolerated(0.07) possibly_damaging(0.507) TCGA-EB-A6QY-01 7 108155457 108155457 T C PNPLA8 Missense_Mutation p.Y160C 0.13 tolerated(0.12) benign(0.006) TCGA-EB-A6QY-01 7 115580532 115580532 G A TFEC 3'UTR 0.09 TCGA-EB-A6QY-01 7 116859152 116859152 C T ST7 Missense_Mutation p.P474S 0.06 deleterious(0.03) probably_damaging(0.932) TCGA-EB-A6QY-01 7 120884255 120884255 G A CPED1 Splice_Site p.X725_splice 0.22 TCGA-EB-A6QY-01 7 121943798 121943798 C T FEZF1 Missense_Mutation p.E232K 0.38 deleterious(0.02) benign(0.411) TCGA-EB-A6QY-01 7 123092785 123092785 C T IQUB 3'UTR 0.47 TCGA-EB-A6QY-01 7 123324492 123324492 G A WASL 3'UTR 0.50 TCGA-EB-A6QY-01 7 132481316 132481316 A T CHCHD3 Missense_Mutation p.C183S 0.20 deleterious(0) probably_damaging(0.96) TCGA-EB-A6QY-01 7 133041176 133041176 T C EXOC4 Silent p.L286L 0.15 TCGA-EB-A6QY-01 7 134215427 134215427 G A AKR1B10 Silent p.K33K 0.18 TCGA-EB-A6QY-01 7 136699632 136699632 C T CHRM2 Missense_Mutation p.S7F 0.17 tolerated(0.2) unknown(0) TCGA-EB-A6QY-01 7 137792215 137792215 G A AKR1D1 Silent p.G248G 0.42 TCGA-EB-A6QY-01 7 138447651 138447651 G A ATP6V0A4 Silent p.F137F 0.49 TCGA-EB-A6QY-01 7 139416130 139416130 G A HIPK2 Missense_Mutation p.S235F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 7 139796474 139796474 C T KDM7A Missense_Mutation p.R752K 0.51 tolerated(0.97) benign(0.021) TCGA-EB-A6QY-01 7 139796475 139796475 T C KDM7A Missense_Mutation p.R752G 0.51 tolerated(0.54) benign(0.001) TCGA-EB-A6QY-01 7 140156591 140156591 T C MKRN1 Missense_Mutation p.I283V 0.06 tolerated(0.1) benign(0.107) TCGA-EB-A6QY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EB-A6QY-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.38 deleterious(0) possibly_damaging(0.838) TCGA-EB-A6QY-01 7 141752115 141752115 G A MGAM Missense_Mutation p.D943N 0.32 tolerated(0.91) benign(0) TCGA-EB-A6QY-01 7 142001122 142001122 G A TRBV2 Missense_Mutation p.E39K 0.40 TCGA-EB-A6QY-01 7 142334729 142334729 C T TRBV20-1 Missense_Mutation p.R51C 0.23 deleterious(0.04) possibly_damaging(0.862) TCGA-EB-A6QY-01 7 142448143 142448143 C T TRBV29-1 Silent p.L8L 0.23 TCGA-EB-A6QY-01 7 142448667 142448667 C T TRBV29-1 Silent p.N87N 0.45 TCGA-EB-A6QY-01 7 142650984 142650984 G A KEL Silent p.S328S 0.24 TCGA-EB-A6QY-01 7 142836741 142836741 G A PIP 3'UTR 0.23 TCGA-EB-A6QY-01 7 142960542 142960542 G A GSTK1 5'Flank 0.45 TCGA-EB-A6QY-01 7 144228212 144228212 G A TPK1 Intron 0.33 TCGA-EB-A6QY-01 7 1488268 1488268 C T MICALL2 Missense_Mutation p.G108S 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-EB-A6QY-01 7 149520532 149520532 G A SSPO RNA 0.12 TCGA-EB-A6QY-01 7 149575854 149575854 G A ATP6V0E2 Intron 0.19 TCGA-EB-A6QY-01 7 149575855 149575855 G A ATP6V0E2 Intron 0.20 TCGA-EB-A6QY-01 7 150269289 150269289 G A GIMAP4 Missense_Mutation p.S44N 0.12 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 7 150325035 150325035 C T GIMAP6 Silent p.E217E 0.43 TCGA-EB-A6QY-01 7 150325506 150325506 G A GIMAP6 Silent p.I60I 0.22 TCGA-EB-A6QY-01 7 150416142 150416142 G C GIMAP1 Missense_Mutation p.G3R 0.08 tolerated(0.08) benign(0.247) TCGA-EB-A6QY-01 7 150417986 150417986 G A GIMAP1 Silent p.E298E 0.55 TCGA-EB-A6QY-01 7 150774127 150774127 G A FASTK Intron 0.21 TCGA-EB-A6QY-01 7 155598990 155598990 C T SHH Missense_Mutation p.E188K 0.10 deleterious(0.01) benign(0.032) TCGA-EB-A6QY-01 7 1855793 1855793 G A MAD1L1 Silent p.I690I 0.45 TCGA-EB-A6QY-01 7 19015541 19015541 G A HDAC9 Silent p.V1045V 0.27 TCGA-EB-A6QY-01 7 21778402 21778402 G A DNAH11 Missense_Mutation p.D2584N 0.27 probably_damaging(1) TCGA-EB-A6QY-01 7 23802485 23802485 A C STK31 Missense_Mutation p.E453D 0.23 tolerated(0.33) benign(0.011) TCGA-EB-A6QY-01 7 31378400 31378400 G A NEUROD6 Silent p.F161F 0.26 TCGA-EB-A6QY-01 7 31918653 31918653 G A PDE1C Silent p.F187F 0.25 TCGA-EB-A6QY-01 7 33644824 33644824 G A BBS9 Missense_Mutation p.G884R 0.28 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-EB-A6QY-01 7 36552673 36552673 C T AOAH 3'UTR 0.23 TCGA-EB-A6QY-01 7 43827525 43827525 T C BLVRA Missense_Mutation p.V12A 0.29 tolerated(0.28) probably_damaging(0.999) TCGA-EB-A6QY-01 7 44268587 44268587 G A CAMK2B Intron 0.27 TCGA-EB-A6QY-01 7 44805121 44805121 C T ZMIZ2 Missense_Mutation p.P729S 0.16 tolerated(0.07) benign(0.309) TCGA-EB-A6QY-01 7 45932719 45932719 G A IGFBP1 3'UTR 0.09 TCGA-EB-A6QY-01 7 47921588 47921588 C T PKD1L1 Missense_Mutation p.G1121S 0.19 tolerated(0.3) benign(0.245) TCGA-EB-A6QY-01 7 5391507 5391507 G A TNRC18 Nonsense_Mutation p.R1805* 0.12 TCGA-EB-A6QY-01 7 64389396 64389396 C T ZNF273 Missense_Mutation p.H564Y 0.27 tolerated(0.06) probably_damaging(0.97) TCGA-EB-A6QY-01 7 6825591 6825591 G A RSPH10B2 Missense_Mutation p.M590I 0.14 tolerated(0.22) benign(0.001) TCGA-EB-A6QY-01 7 71177250 71177250 C T WBSCR17 3'UTR 0.19 TCGA-EB-A6QY-01 7 72412623 72412623 C T POM121 Silent p.S432S 0.20 TCGA-EB-A6QY-01 7 73790392 73790392 A C CLIP2 Missense_Mutation p.K554T 0.30 tolerated(0.43) benign(0.083) TCGA-EB-A6QY-01 7 810213 810213 C T HEATR2 Missense_Mutation p.S630F 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-EB-A6QY-01 7 81624209 81624209 C T CACNA2D1 Missense_Mutation p.R570K 0.10 tolerated(0.96) benign(0.002) TCGA-EB-A6QY-01 7 82508724 82508724 C T PCLO Missense_Mutation p.G4528E 0.47 unknown(0) TCGA-EB-A6QY-01 7 82579626 82579626 C A PCLO Missense_Mutation p.M3426I 0.15 unknown(0) TCGA-EB-A6QY-01 7 82585116 82585116 G A PCLO Missense_Mutation p.S1718L 0.12 unknown(0) TCGA-EB-A6QY-01 7 92733606 92733606 G A SAMD9 Missense_Mutation p.S602L 0.26 deleterious(0) benign(0.282) TCGA-EB-A6QY-01 7 95726852 95726852 C T DYNC1I1 Missense_Mutation p.R629C 0.06 deleterious(0) possibly_damaging(0.841) TCGA-EB-A6QY-01 8 10583362 10583362 G A SOX7 Silent p.L403L 0.39 TCGA-EB-A6QY-01 8 11174302 11174302 C T MTMR9 Missense_Mutation p.P412S 0.48 deleterious(0.03) possibly_damaging(0.762) TCGA-EB-A6QY-01 8 123965057 123965057 C T ZHX2 Missense_Mutation p.P436L 0.47 tolerated(0.23) benign(0.001) TCGA-EB-A6QY-01 8 12973167 12973167 C T DLC1 Splice_Site p.X450_splice 0.48 TCGA-EB-A6QY-01 8 132051905 132051905 C T ADCY8 Silent p.V225V 0.41 TCGA-EB-A6QY-01 8 133152347 133152347 A C KCNQ3 Missense_Mutation p.L515R 0.47 deleterious(0) probably_damaging(0.951) TCGA-EB-A6QY-01 8 139189598 139189598 C T FAM135B Silent p.Q365Q 0.25 TCGA-EB-A6QY-01 8 139263157 139263157 C T FAM135B Missense_Mutation p.D157N 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 8 142146802 142146802 C T DENND3 Silent p.L19L 0.21 TCGA-EB-A6QY-01 8 143996574 143996574 C A CYP11B2 Silent p.V161V 0.12 TCGA-EB-A6QY-01 8 144943440 144943440 G A EPPK1 Missense_Mutation p.P1328S 0.24 benign(0.001) TCGA-EB-A6QY-01 8 145584375 145584375 T G SLC52A2 Splice_Site p.X375_splice 0.15 TCGA-EB-A6QY-01 8 145617309 145617309 C T ADCK5 Missense_Mutation p.P372S 0.22 tolerated(0.13) benign(0.015) TCGA-EB-A6QY-01 8 18490237 18490237 G A PSD3 Missense_Mutation p.R766C 0.33 deleterious(0) probably_damaging(0.953) TCGA-EB-A6QY-01 8 24775972 24775972 T G NEFM Silent p.G868G 0.39 TCGA-EB-A6QY-01 8 42033371 42033371 C T PLAT 3'UTR 0.50 TCGA-EB-A6QY-01 8 52323836 52323836 C T PXDNL Missense_Mutation p.G679E 0.44 deleterious(0.03) possibly_damaging(0.686) TCGA-EB-A6QY-01 8 61736465 61736465 G A CHD7 Missense_Mutation p.D1090N 0.27 probably_damaging(0.998) TCGA-EB-A6QY-01 8 65537031 65537031 C T CYP7B1 Missense_Mutation p.R63Q 0.44 tolerated(0.78) benign(0.012) TCGA-EB-A6QY-01 8 67039554 67039554 G A TRIM55 Missense_Mutation p.M17I 0.37 deleterious(0.02) possibly_damaging(0.77) TCGA-EB-A6QY-01 8 67040682 67040682 C T TRIM55 Silent p.I104I 0.40 TCGA-EB-A6QY-01 9 104130565 104130565 C T BAAT Missense_Mutation p.G169D 0.26 tolerated(0.37) benign(0.043) TCGA-EB-A6QY-01 9 104307077 104307077 G A RNF20 Silent p.Q219Q 0.24 TCGA-EB-A6QY-01 9 107289308 107289308 G A OR13C4 Silent p.F61F 0.25 TCGA-EB-A6QY-01 9 109734536 109734536 C T ZNF462 Silent p.S2226S 0.28 TCGA-EB-A6QY-01 9 113208209 113208209 C T SVEP1 Missense_Mutation p.M1457I 0.28 probably_damaging(0.909) TCGA-EB-A6QY-01 9 115421707 115421707 C T KIAA1958 Silent p.F503F 0.41 TCGA-EB-A6QY-01 9 120053654 120053654 G A ASTN2 Missense_Mutation p.P194L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-EB-A6QY-01 9 121929400 121929400 G A BRINP1 Missense_Mutation p.L750F 0.42 deleterious(0.04) probably_damaging(0.969) TCGA-EB-A6QY-01 9 12695537 12695537 A G TYRP1 Silent p.L136L 0.40 TCGA-EB-A6QY-01 9 12695653 12695653 A T TYRP1 Missense_Mutation p.N175I 0.41 deleterious(0.01) possibly_damaging(0.602) TCGA-EB-A6QY-01 9 130434349 130434349 C T STXBP1 Missense_Mutation p.S328F 0.31 deleterious(0) possibly_damaging(0.877) TCGA-EB-A6QY-01 9 131670550 131670550 G A LRRC8A Silent p.K369K 0.45 TCGA-EB-A6QY-01 9 135702290 135702290 G A AK8 Silent p.I236I 0.30 TCGA-EB-A6QY-01 9 139734199 139734199 C T RABL6 Silent p.G605G 0.35 TCGA-EB-A6QY-01 9 139915144 139915144 A G ABCA2 Splice_Site p.X422_splice 0.29 TCGA-EB-A6QY-01 9 140331063 140331063 G A ENTPD8 Silent p.L232L 0.23 TCGA-EB-A6QY-01 9 140344688 140344688 T C NSMF Missense_Mutation p.Y419C 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A6QY-01 9 140777439 140777439 G A CACNA1B Intron 0.13 TCGA-EB-A6QY-01 9 14868973 14868973 C T FREM1 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.003) TCGA-EB-A6QY-01 9 18622332 18622332 G A ADAMTSL1 Missense_Mutation p.R189Q 0.51 deleterious(0) probably_damaging(0.963) TCGA-EB-A6QY-01 9 21206796 21206796 C T IFNA10 Missense_Mutation p.E101K 0.41 deleterious(0.01) benign(0.063) TCGA-EB-A6QY-01 9 33265001 33265001 G A CHMP5 5'UTR 0.25 TCGA-EB-A6QY-01 9 340284 340284 C T DOCK8 Missense_Mutation p.P548S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QY-01 9 4567723 4567723 A T SLC1A1 Missense_Mutation p.T180S 0.15 tolerated(0.28) benign(0.032) TCGA-EB-A6QY-01 9 77112897 77112897 G A RORB Missense_Mutation p.R2Q 0.12 deleterious(0.04) benign(0.017) TCGA-EB-A6QY-01 9 77377635 77377635 C T TRPM6 Missense_Mutation p.E1318K 0.27 tolerated_low_confidence(0.28) benign(0.005) TCGA-EB-A6QY-01 9 77703530 77703530 G T OSTF1 5'UTR 0.38 TCGA-EB-A6QY-01 9 98242860 98242860 G A PTCH1 Missense_Mutation p.P253S 0.33 tolerated(0.73) benign(0.011) TCGA-EB-A6QY-01 X 105450931 105450931 G A MUM1L1 Silent p.R502R 0.51 TCGA-EB-A6QY-01 X 110576366 110576366 C T DCX Missense_Mutation p.D322N 0.54 deleterious(0.04) probably_damaging(0.977) TCGA-EB-A6QY-01 X 12736670 12736670 C T FRMPD4 Missense_Mutation p.S1242F 0.41 deleterious_low_confidence(0.01) benign(0.372) TCGA-EB-A6QY-01 X 1317520 1317520 G A CRLF2 Missense_Mutation p.S182F 0.35 tolerated(0.86) benign(0.007) TCGA-EB-A6QY-01 X 136113488 136113488 A G GPR101 Missense_Mutation p.F116L 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A6QY-01 X 1407502 1407502 G A CSF2RA Missense_Mutation p.G104R 0.33 tolerated(0.71) benign(0.001) TCGA-EB-A6QY-01 X 140967099 140967099 G A MAGEC3 Missense_Mutation p.E133K 0.50 tolerated_low_confidence(0.32) benign(0.003) TCGA-EB-A6QY-01 X 142967575 142967575 G A UBE2NL Missense_Mutation p.D125N 0.50 tolerated(0.1) benign(0.019) TCGA-EB-A6QY-01 X 153038712 153038712 C T PLXNB3 Silent p.I1001I 0.27 TCGA-EB-A6QY-01 X 155171561 155171561 C T VAMP7 Missense_Mutation p.H181Y 0.27 tolerated(0.12) benign(0.291) TCGA-EB-A6QY-01 X 15596435 15596435 G A ACE2 Silent p.I358I 0.58 TCGA-EB-A6QY-01 X 24229062 24229062 A T ZFX Nonsense_Mutation p.K663* 0.42 TCGA-EB-A6QY-01 X 34148347 34148347 C T FAM47A Silent p.S683S 0.35 TCGA-EB-A6QY-01 X 69424192 69424192 G A DGAT2L6 Missense_Mutation p.E229K 0.64 deleterious(0) possibly_damaging(0.529) TCGA-EB-A6QY-01 X 73524122 73524122 C T ZCCHC13 Silent p.F7F 0.73 TCGA-EB-A6QY-01 X 78010424 78010424 C T LPAR4 Missense_Mutation p.P20S 0.55 tolerated_low_confidence(0.76) benign(0.001) TCGA-EB-A6QY-01 X 84510375 84510375 C T ZNF711 Missense_Mutation p.H64Y 0.56 deleterious(0.05) benign(0.03) TCGA-EB-A6QZ-01 10 127755288 127755288 G A ADAM12 Nonsense_Mutation p.Q474* 0.83 TCGA-EB-A6QZ-01 10 129906958 129906958 C T MKI67 Missense_Mutation p.G1049E 0.83 tolerated(0.23) benign(0.009) TCGA-EB-A6QZ-01 10 135053190 135053190 G A VENTX Silent p.K84K 0.91 TCGA-EB-A6QZ-01 10 16967624 16967624 G A CUBN Missense_Mutation p.P2141S 0.82 tolerated(0.26) benign(0.038) TCGA-EB-A6QZ-01 10 30316861 30316861 C T KIAA1462 Missense_Mutation p.G739D 0.72 tolerated(0.69) possibly_damaging(0.576) TCGA-EB-A6QZ-01 10 90707056 90707056 T C ACTA2 Missense_Mutation p.I73V 0.84 tolerated_low_confidence(0.1) benign(0.011) TCGA-EB-A6QZ-01 11 100141879 100141879 C A CNTN5 Silent p.P740P 0.46 TCGA-EB-A6QZ-01 11 108009679 108009689 AACAGAGGATC - ACAT1 Frame_Shift_Del p.R165Tfs*8 0.42 TCGA-EB-A6QZ-01 11 1081807 1081807 G A MUC2 Missense_Mutation p.E579K 0.47 probably_damaging(0.983) TCGA-EB-A6QZ-01 11 117667814 117667814 C T DSCAML1 Missense_Mutation p.R54K 0.46 tolerated_low_confidence(0.19) unknown(0) TCGA-EB-A6QZ-01 11 118343093 118343093 C T KMT2A Nonsense_Mutation p.R407* 0.45 TCGA-EB-A6QZ-01 11 124189313 124189313 T G OR8D2 Missense_Mutation p.K261Q 0.49 tolerated(0.67) possibly_damaging(0.898) TCGA-EB-A6QZ-01 11 124623816 124623816 C T ESAM Missense_Mutation p.S300N 0.93 tolerated(0.06) benign(0.001) TCGA-EB-A6QZ-01 11 19259605 19259605 G A E2F8 Silent p.I30I 0.33 TCGA-EB-A6QZ-01 11 27016585 27016585 C T FIBIN Missense_Mutation p.S171F 0.42 deleterious_low_confidence(0.04) benign(0.192) TCGA-EB-A6QZ-01 11 373058 373058 C T B4GALNT4 Silent p.S159S 0.54 TCGA-EB-A6QZ-01 11 380152 380152 G A B4GALNT4 Missense_Mutation p.G889R 0.30 deleterious(0) unknown(0) TCGA-EB-A6QZ-01 11 380153 380153 G A B4GALNT4 Missense_Mutation p.G889E 0.30 deleterious(0) unknown(0) TCGA-EB-A6QZ-01 11 5529744 5529744 A G UBQLN3 Silent p.L349L 0.42 TCGA-EB-A6QZ-01 11 556900 556900 C T C11orf35 Missense_Mutation p.R304Q 0.28 tolerated(0.98) benign(0.003) TCGA-EB-A6QZ-01 11 56020522 56020522 G A OR5T3 Missense_Mutation p.G283R 0.32 deleterious(0) possibly_damaging(0.873) TCGA-EB-A6QZ-01 11 57077340 57077340 C T TNKS1BP1 Missense_Mutation p.E949K 0.37 deleterious(0.02) benign(0.05) TCGA-EB-A6QZ-01 11 59630082 59630082 T C TCN1 Missense_Mutation p.K125E 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 11 62299326 62299326 T C AHNAK Missense_Mutation p.K855E 0.42 probably_damaging(0.92) TCGA-EB-A6QZ-01 11 64880977 64880977 G A TM7SF2 Missense_Mutation p.D172N 0.43 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 11 65787838 65787838 C T CATSPER1 Missense_Mutation p.D672N 0.34 deleterious(0) probably_damaging(0.989) TCGA-EB-A6QZ-01 11 67267718 67267718 C T PITPNM1 Missense_Mutation p.G272E 0.87 tolerated(0.7) benign(0.12) TCGA-EB-A6QZ-01 11 71277010 71277010 C T KRTAP5-10 Missense_Mutation p.S126F 0.86 unknown(0) TCGA-EB-A6QZ-01 11 71806576 71806576 G A LRTOMT Intron 0.44 TCGA-EB-A6QZ-01 11 88068216 88068216 C T CTSC Silent p.Q69Q 0.87 TCGA-EB-A6QZ-01 12 11546699 11546699 C T PRB2 Missense_Mutation p.G105R 0.31 deleterious(0) unknown(0) TCGA-EB-A6QZ-01 12 117653050 117653050 G A NOS1 3'Flank 0.43 TCGA-EB-A6QZ-01 12 120499606 120499606 C T CCDC64 Silent p.I246I 0.69 TCGA-EB-A6QZ-01 12 123479984 123479984 G A PITPNM2 Missense_Mutation p.S669F 0.34 tolerated(0.08) probably_damaging(0.996) TCGA-EB-A6QZ-01 12 124411309 124411309 G A DNAH10 Missense_Mutation p.R3898Q 0.38 benign(0.025) TCGA-EB-A6QZ-01 12 14940156 14940156 T C WBP11 Missense_Mutation p.K590R 0.41 tolerated(0.11) probably_damaging(0.939) TCGA-EB-A6QZ-01 12 18872527 18872527 C T PLCZ1 Missense_Mutation p.R136K 0.31 tolerated(0.2) possibly_damaging(0.9) TCGA-EB-A6QZ-01 12 1943583 1943583 C T LRTM2 Missense_Mutation p.T270I 0.55 tolerated(0.48) benign(0.071) TCGA-EB-A6QZ-01 12 21032478 21032478 C T SLCO1B3 Missense_Mutation p.S415L 0.51 tolerated(0.07) benign(0.052) TCGA-EB-A6QZ-01 12 41966562 41966562 G A PDZRN4 Missense_Mutation p.G661R 0.46 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 12 4702298 4702298 G A DYRK4 Silent p.T83T 0.46 TCGA-EB-A6QZ-01 12 4919741 4919741 C T KCNA6 Silent p.I178I 0.41 TCGA-EB-A6QZ-01 12 4919910 4919910 C T KCNA6 Missense_Mutation p.H235Y 0.44 tolerated(0.52) benign(0.002) TCGA-EB-A6QZ-01 12 52566882 52566882 G A KRT80 Silent p.I299I 0.36 TCGA-EB-A6QZ-01 12 54971042 54971042 C T PDE1B Missense_Mutation p.S514F 0.51 deleterious(0.02) possibly_damaging(0.831) TCGA-EB-A6QZ-01 12 55725998 55725998 G C OR6C3 Missense_Mutation p.D172H 0.46 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EB-A6QZ-01 12 62104018 62104018 T C FAM19A2 3'UTR 0.36 TCGA-EB-A6QZ-01 12 6219720 6219720 G A VWF Silent p.L118L 0.36 TCGA-EB-A6QZ-01 12 6499337 6499337 C T LTBR Silent p.F287F 0.38 TCGA-EB-A6QZ-01 12 6499338 6499338 C T LTBR Missense_Mutation p.P288S 0.38 deleterious(0.03) possibly_damaging(0.833) TCGA-EB-A6QZ-01 12 675055 675055 G A NINJ2 Intron 0.38 TCGA-EB-A6QZ-01 12 7043473 7043473 C T ATN1 Silent p.A54A 0.38 TCGA-EB-A6QZ-01 12 71029629 71029629 G A PTPRB Silent p.P91P 0.62 TCGA-EB-A6QZ-01 12 7525992 7525992 G A CD163L1 Silent p.S1218S 0.45 TCGA-EB-A6QZ-01 12 7640184 7640184 G A CD163 Silent p.L607L 0.54 TCGA-EB-A6QZ-01 12 77257053 77257053 A T CSRP2 Missense_Mutation p.Y62N 0.53 deleterious(0) probably_damaging(0.991) TCGA-EB-A6QZ-01 12 7970586 7970586 C T SLC2A14 Silent p.L395L 0.22 TCGA-EB-A6QZ-01 12 86198613 86198613 C T RASSF9 Missense_Mutation p.G392E 0.47 tolerated(0.36) benign(0.005) TCGA-EB-A6QZ-01 13 102379153 102379153 A C FGF14 Missense_Mutation p.F144C 0.41 deleterious(0) probably_damaging(0.917) TCGA-EB-A6QZ-01 13 29599994 29599995 GG - MTUS2 Frame_Shift_Del p.E398Afs*19 0.34 TCGA-EB-A6QZ-01 13 32745285 32745285 A G FRY Missense_Mutation p.M677V 0.43 tolerated(0.43) benign(0) TCGA-EB-A6QZ-01 13 72049847 72049847 C T DACH1 Missense_Mutation p.V671I 0.39 benign(0.022) TCGA-EB-A6QZ-01 13 88328648 88328648 C T SLITRK5 Silent p.R335R 0.31 TCGA-EB-A6QZ-01 14 104206492 104206492 G A PPP1R13B Missense_Mutation p.T754I 0.46 tolerated(0.2) benign(0.003) TCGA-EB-A6QZ-01 14 106780757 106780757 G A IGHV4-28 Missense_Mutation p.T36I 0.31 deleterious(0.03) possibly_damaging(0.717) TCGA-EB-A6QZ-01 14 106926250 106926250 G A IGHV3-43 Silent p.L98L 0.35 TCGA-EB-A6QZ-01 14 22564892 22564892 G A TRDV1 Missense_Mutation p.E115K 0.85 deleterious(0) possibly_damaging(0.709) TCGA-EB-A6QZ-01 14 23862667 23862667 C T MYH6 Missense_Mutation p.E997K 0.87 deleterious(0) possibly_damaging(0.566) TCGA-EB-A6QZ-01 14 24040638 24040638 G A JPH4 Silent p.S434S 0.78 TCGA-EB-A6QZ-01 14 24040639 24040639 G A JPH4 Missense_Mutation p.S434F 0.79 tolerated(0.05) benign(0.276) TCGA-EB-A6QZ-01 14 24901146 24901146 C T KHNYN Missense_Mutation p.P227S 0.75 tolerated(0.45) benign(0.003) TCGA-EB-A6QZ-01 14 34269520 34269520 C T NPAS3 Silent p.P669P 0.83 TCGA-EB-A6QZ-01 14 36946189 36946189 G A SFTA3 Missense_Mutation p.S83L 0.76 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EB-A6QZ-01 14 70714155 70714155 G A ADAM21P1 RNA 0.36 TCGA-EB-A6QZ-01 14 74823854 74823854 T G VRTN Missense_Mutation p.M123R 0.57 deleterious(0) probably_damaging(0.99) TCGA-EB-A6QZ-01 14 96706581 96706581 A T BDKRB2 Intron 0.11 TCGA-EB-A6QZ-01 14 99641476 99641476 C T BCL11B Missense_Mutation p.R566H 0.44 tolerated(0.67) benign(0.086) TCGA-EB-A6QZ-01 14 99927678 99927678 C T SETD3 Splice_Site p.X66_splice 0.49 TCGA-EB-A6QZ-01 14 99932055 99932055 T C SETD3 Missense_Mutation p.S30G 0.41 tolerated(0.2) benign(0.031) TCGA-EB-A6QZ-01 15 25330355 25330355 G A SNORD116-18 5'Flank 0.45 TCGA-EB-A6QZ-01 15 36983917 36983917 G A C15orf41 Silent p.R126R 0.40 TCGA-EB-A6QZ-01 15 50168634 50168634 G A ATP8B4 Silent p.F956F 0.41 TCGA-EB-A6QZ-01 15 54005089 54005089 C T WDR72 Splice_Site p.X198_splice 0.32 TCGA-EB-A6QZ-01 15 66416254 66416254 G A MEGF11 Silent p.F61F 0.41 TCGA-EB-A6QZ-01 15 75189870 75189870 T C MPI Silent p.T357T 0.30 TCGA-EB-A6QZ-01 15 85326436 85326436 C T ZNF592 Missense_Mutation p.A177V 0.40 tolerated(0.13) benign(0.049) TCGA-EB-A6QZ-01 16 20871197 20871197 G A DCUN1D3 3'UTR 0.39 TCGA-EB-A6QZ-01 16 20944734 20944734 C T DNAH3 Silent p.T4031T 0.43 TCGA-EB-A6QZ-01 16 30456871 30456871 A T SEPHS2 Missense_Mutation p.Sec60R 0.40 TCGA-EB-A6QZ-01 16 3169293 3169293 C T ZNF205 Missense_Mutation p.S211F 0.50 tolerated(0.06) benign(0.006) TCGA-EB-A6QZ-01 16 3454838 3454838 C T ZNF174 Intron 0.31 TCGA-EB-A6QZ-01 16 55361531 55361531 C T IRX6 Silent p.R149R 0.45 TCGA-EB-A6QZ-01 16 66785526 66785526 C T DYNC1LI2 5'UTR 0.47 TCGA-EB-A6QZ-01 16 71571304 71571304 C T CHST4 Missense_Mutation p.P242S 0.39 tolerated(0.35) probably_damaging(0.95) TCGA-EB-A6QZ-01 16 72090482 72090482 G A HP Missense_Mutation p.V48I 0.32 tolerated(0.22) benign(0.134) TCGA-EB-A6QZ-01 16 846742 846742 C G CHTF18 Missense_Mutation p.P828A 0.55 deleterious(0) benign(0.445) TCGA-EB-A6QZ-01 16 88552350 88552350 C T ZFPM1 Missense_Mutation p.S15F 0.47 deleterious(0) benign(0.183) TCGA-EB-A6QZ-01 16 89789952 89789952 G A ZNF276 Missense_Mutation p.D281N 0.53 tolerated(0.38) benign(0.018) TCGA-EB-A6QZ-01 16 9010994 9010994 G A USP7 Missense_Mutation p.T247I 0.48 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QZ-01 17 10298460 10298460 C T MYH8 Missense_Mutation p.G1651E 0.40 tolerated(0.09) benign(0.028) TCGA-EB-A6QZ-01 17 10354189 10354189 C T MYH4 Missense_Mutation p.E1297K 0.31 deleterious(0) possibly_damaging(0.852) TCGA-EB-A6QZ-01 17 10404651 10404651 C T MYH1 Missense_Mutation p.E1172K 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A6QZ-01 17 10432131 10432131 G A MYH2 Missense_Mutation p.A1207V 0.40 deleterious(0.01) possibly_damaging(0.651) TCGA-EB-A6QZ-01 17 10542883 10542883 C T MYH3 Silent p.E973E 0.39 TCGA-EB-A6QZ-01 17 11511565 11511565 A C DNAH9 Missense_Mutation p.Q179H 0.07 benign(0.005) TCGA-EB-A6QZ-01 17 34072985 34072985 G A GAS2L2 Missense_Mutation p.R511C 0.28 tolerated(0.14) benign(0.002) TCGA-EB-A6QZ-01 17 36093664 36093664 C A HNF1B Missense_Mutation p.R232L 0.43 deleterious(0) probably_damaging(0.994) TCGA-EB-A6QZ-01 17 38569054 38569054 G A TOP2A Missense_Mutation p.S249F 0.58 deleterious(0) probably_damaging(0.962) TCGA-EB-A6QZ-01 17 41150612 41150612 C T RPL27 5'UTR 0.46 TCGA-EB-A6QZ-01 17 41150613 41150613 C T RPL27 5'UTR 0.50 TCGA-EB-A6QZ-01 17 42992473 42992473 C T GFAP Missense_Mutation p.D128N 0.53 deleterious(0) probably_damaging(0.988) TCGA-EB-A6QZ-01 17 44108837 44108837 C A KANSL1 3'UTR 0.44 TCGA-EB-A6QZ-01 17 44845874 44845874 C T WNT3 Missense_Mutation p.G294S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A6QZ-01 17 4802086 4802086 C T CHRNE Missense_Mutation p.G476E 0.52 tolerated(0.46) possibly_damaging(0.548) TCGA-EB-A6QZ-01 17 48072363 48072363 C T DLX3 5'UTR 0.55 TCGA-EB-A6QZ-01 17 48655877 48655877 C T CACNA1G Silent p.I751I 0.37 TCGA-EB-A6QZ-01 17 54534321 54534321 G A ANKFN1 Missense_Mutation p.R439Q 0.50 deleterious(0) probably_damaging(0.976) TCGA-EB-A6QZ-01 17 54925412 54925412 G A DGKE Missense_Mutation p.D292N 0.60 tolerated(0.23) benign(0.077) TCGA-EB-A6QZ-01 17 57697426 57697426 G A CLTC 5'UTR 0.71 TCGA-EB-A6QZ-01 17 61776464 61776464 C T LIMD2 Intron 0.50 TCGA-EB-A6QZ-01 17 63578 63578 G A RPH3AL 3'UTR 0.39 TCGA-EB-A6QZ-01 17 7699819 7699819 A G DNAH2 Missense_Mutation p.N2571S 0.42 benign(0.084) TCGA-EB-A6QZ-01 17 80367249 80367249 C T OGFOD3 Missense_Mutation p.G140R 0.45 deleterious(0) probably_damaging(0.994) TCGA-EB-A6QZ-01 18 14779981 14779981 C T ANKRD30B Silent p.S481S 0.09 TCGA-EB-A6QZ-01 18 21141474 21141474 G A NPC1 Missense_Mutation p.R161W 0.52 deleterious(0.01) possibly_damaging(0.596) TCGA-EB-A6QZ-01 18 29052363 29052363 G A DSG3 Missense_Mutation p.E672K 0.40 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QZ-01 18 29055904 29055904 G A DSG3 Missense_Mutation p.G894E 0.47 tolerated(0.77) benign(0.006) TCGA-EB-A6QZ-01 18 31324822 31324822 T C ASXL3 Silent p.S1670S 0.05 TCGA-EB-A6QZ-01 18 55351389 55351389 C T ATP8B1 Silent p.G503G 0.32 TCGA-EB-A6QZ-01 18 60582234 60582234 C T PHLPP1 Missense_Mutation p.P933S 0.53 deleterious(0.05) probably_damaging(1) TCGA-EB-A6QZ-01 18 619340 619340 G A CLUL1 Silent p.K78K 0.45 TCGA-EB-A6QZ-01 19 10088273 10088273 G A COL5A3 Silent p.S1041S 0.38 TCGA-EB-A6QZ-01 19 11038601 11038601 G A YIPF2 Silent p.T22T 0.43 TCGA-EB-A6QZ-01 19 11038602 11038602 G A YIPF2 Missense_Mutation p.T22I 0.43 deleterious(0.01) benign(0.365) TCGA-EB-A6QZ-01 19 11917104 11917104 C T ZNF491 Silent p.F112F 0.46 TCGA-EB-A6QZ-01 19 12155349 12155349 C T ZNF878 Silent p.R289R 0.36 TCGA-EB-A6QZ-01 19 13419020 13419020 G A CACNA1A Silent p.S609S 0.47 TCGA-EB-A6QZ-01 19 16268501 16268501 T C HSH2D 3'Flank 0.26 TCGA-EB-A6QZ-01 19 16918577 16918577 C T NWD1 Missense_Mutation p.S1306F 0.32 deleterious(0) possibly_damaging(0.789) TCGA-EB-A6QZ-01 19 22271817 22271817 A G ZNF257 Missense_Mutation p.K422R 0.05 tolerated(0.06) possibly_damaging(0.651) TCGA-EB-A6QZ-01 19 36124043 36124043 C T RBM42 Silent p.A191A 0.45 TCGA-EB-A6QZ-01 19 36124044 36124044 C T RBM42 Missense_Mutation p.L192F 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-EB-A6QZ-01 19 371295 371295 C G THEG Silent p.R221R 0.35 TCGA-EB-A6QZ-01 19 39433258 39433258 C T FBXO17 Missense_Mutation p.R276H 0.04 tolerated(0.07) probably_damaging(0.996) TCGA-EB-A6QZ-01 19 39805230 39805230 G A LRFN1 Silent p.F249F 0.28 TCGA-EB-A6QZ-01 19 41430338 41430338 C T CYP2B7P RNA 0.43 TCGA-EB-A6QZ-01 19 42795740 42795740 C T CIC Missense_Mutation p.P910L 0.41 benign(0.017) TCGA-EB-A6QZ-01 19 43433643 43433643 C T PSG7 Silent p.R220R 0.50 TCGA-EB-A6QZ-01 19 43699349 43699349 A C PSG4 Missense_Mutation p.C262W 0.43 deleterious(0) possibly_damaging(0.892) TCGA-EB-A6QZ-01 19 44378101 44378101 C T ZNF404 Missense_Mutation p.D89N 0.38 tolerated(0.55) benign(0.025) TCGA-EB-A6QZ-01 19 44933589 44933589 G T ZNF229 Missense_Mutation p.P456H 0.50 deleterious(0.01) possibly_damaging(0.557) TCGA-EB-A6QZ-01 19 44933724 44933724 C T ZNF229 Missense_Mutation p.G411E 0.52 deleterious(0.02) probably_damaging(1) TCGA-EB-A6QZ-01 19 45315517 45315517 C T BCAM Missense_Mutation p.P101L 0.38 deleterious(0.02) benign(0.41) TCGA-EB-A6QZ-01 19 48945500 48945500 T C GRIN2D Missense_Mutation p.M845T 0.36 deleterious(0) possibly_damaging(0.675) TCGA-EB-A6QZ-01 19 49110152 49110152 C T SPACA4 5'UTR 0.44 TCGA-EB-A6QZ-01 19 50496144 50496144 G A VRK3 Silent p.I312I 0.34 TCGA-EB-A6QZ-01 19 52003316 52003316 G A SIGLEC12 Silent p.L222L 0.31 TCGA-EB-A6QZ-01 19 53793269 53793269 C T BIRC8 Missense_Mutation p.R120Q 0.37 tolerated(0.55) benign(0.01) TCGA-EB-A6QZ-01 19 53855644 53855644 C T ZNF845 Silent p.I572I 0.47 TCGA-EB-A6QZ-01 19 54197669 54197669 G A MIR526B RNA 0.51 TCGA-EB-A6QZ-01 19 54228765 54228765 G A MIR516B2 RNA 0.40 TCGA-EB-A6QZ-01 19 54545604 54545604 G A VSTM1 Silent p.V138V 0.41 TCGA-EB-A6QZ-01 19 54561718 54561718 G A VSTM1 Missense_Mutation p.S66F 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-EB-A6QZ-01 19 56196873 56196873 C G EPN1 Missense_Mutation p.R225G 0.38 deleterious(0) unknown(0) TCGA-EB-A6QZ-01 19 56388469 56388469 A C NLRP4 Missense_Mutation p.D878A 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A6QZ-01 19 57088911 57088911 G C ZNF470 Missense_Mutation p.D372H 0.51 deleterious(0) probably_damaging(0.995) TCGA-EB-A6QZ-01 19 5713200 5713200 G A LONP1 Missense_Mutation p.H195Y 0.34 tolerated(0.1) possibly_damaging(0.793) TCGA-EB-A6QZ-01 19 9213827 9213827 G A OR7G2 Silent p.F52F 0.35 TCGA-EB-A6QZ-01 19 9488949 9488949 G A ZNF177 5'UTR 0.41 TCGA-EB-A6QZ-01 1 102271725 102271725 C T OLFM3 Silent p.L202L 0.40 TCGA-EB-A6QZ-01 1 10713615 10713615 G A CASZ1 Silent p.T833T 0.49 TCGA-EB-A6QZ-01 1 11076934 11076934 C T TARDBP Missense_Mutation p.S91L 0.45 tolerated(0.1) benign(0.011) TCGA-EB-A6QZ-01 1 111996905 111996905 C T ATP5F1 Silent p.Y50Y 0.44 TCGA-EB-A6QZ-01 1 111996918 111996918 C T ATP5F1 Missense_Mutation p.R55C 0.40 deleterious(0.03) benign(0.028) TCGA-EB-A6QZ-01 1 149762969 149762969 C T FCGR1A Missense_Mutation p.L341F 0.37 tolerated(0.45) benign(0.035) TCGA-EB-A6QZ-01 1 155018676 155018676 G A DCST1 Missense_Mutation p.A450T 0.38 tolerated(0.12) benign(0.084) TCGA-EB-A6QZ-01 1 156626103 156626103 G A BCAN Missense_Mutation p.G658S 0.45 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 1 158326177 158326177 G A CD1E Intron 0.44 TCGA-EB-A6QZ-01 1 159038358 159038358 C T AIM2 Silent p.K132K 0.42 TCGA-EB-A6QZ-01 1 160313082 160313082 C T NCSTN 5'UTR 0.53 TCGA-EB-A6QZ-01 1 165721392 165721392 G A TMCO1 Silent p.S141S 0.38 TCGA-EB-A6QZ-01 1 174219699 174219699 C T RABGAP1L Silent p.T268T 0.36 TCGA-EB-A6QZ-01 1 174219700 174219700 C T RABGAP1L Missense_Mutation p.P269S 0.36 tolerated(0.13) benign(0.041) TCGA-EB-A6QZ-01 1 200971309 200971309 T C KIF21B Missense_Mutation p.N461S 0.40 tolerated(0.17) benign(0.001) TCGA-EB-A6QZ-01 1 202097698 202097698 G A GPR37L1 3'UTR 0.61 TCGA-EB-A6QZ-01 1 202566023 202566023 G A SYT2 Silent p.I374I 0.44 TCGA-EB-A6QZ-01 1 213009290 213009290 G A C1orf227 Missense_Mutation p.P68S 0.48 tolerated(0.06) possibly_damaging(0.803) TCGA-EB-A6QZ-01 1 22005848 22005848 C T USP48 3'UTR 0.41 TCGA-EB-A6QZ-01 1 227842965 227842965 C T ZNF678 Silent p.S338S 0.40 TCGA-EB-A6QZ-01 1 2435743 2435743 C T PLCH2 3'UTR 0.53 TCGA-EB-A6QZ-01 1 24434973 24434973 G A MYOM3 Missense_Mutation p.R52C 0.18 deleterious(0) possibly_damaging(0.614) TCGA-EB-A6QZ-01 1 24447751 24447751 T C IL22RA1 Silent p.K423K 0.46 TCGA-EB-A6QZ-01 1 248436232 248436232 C T OR2T33 Silent p.V295V 0.42 TCGA-EB-A6QZ-01 1 35370718 35370718 G A DLGAP3 Silent p.F89F 0.36 TCGA-EB-A6QZ-01 1 36553376 36553376 C T TEKT2 Silent p.I349I 0.31 TCGA-EB-A6QZ-01 1 47276533 47276533 G A CYP4B1 Silent p.P78P 0.48 TCGA-EB-A6QZ-01 1 47606502 47606502 C T CYP4A22 Silent p.F82F 0.44 TCGA-EB-A6QZ-01 1 47612021 47612021 G A CYP4A22 Intron 0.62 TCGA-EB-A6QZ-01 1 53453763 53453763 C T SCP2 Missense_Mutation p.P346S 0.45 deleterious(0) probably_damaging(0.99) TCGA-EB-A6QZ-01 1 54417686 54417686 T A LRRC42 Missense_Mutation p.L5H 0.49 deleterious(0) probably_damaging(0.99) TCGA-EB-A6QZ-01 1 55277497 55277497 G A C1orf177 Missense_Mutation p.E171K 0.45 tolerated(0.65) benign(0.144) TCGA-EB-A6QZ-01 1 55473906 55473906 G A BSND Missense_Mutation p.G190S 0.32 tolerated(0.18) probably_damaging(0.981) TCGA-EB-A6QZ-01 1 55527199 55527199 G A PCSK9 Silent p.K611K 0.36 TCGA-EB-A6QZ-01 1 65309857 65309857 C A JAK1 Nonsense_Mutation p.E765* 0.43 TCGA-EB-A6QZ-01 1 68906581 68906581 A T RPE65 Missense_Mutation p.F200I 0.49 tolerated(0.4) benign(0.019) TCGA-EB-A6QZ-01 1 70486792 70486792 G A LRRC7 Missense_Mutation p.E471K 0.34 deleterious(0) benign(0.086) TCGA-EB-A6QZ-01 1 72400930 72400930 C T NEGR1 Missense_Mutation p.G81R 0.42 deleterious(0) probably_damaging(0.993) TCGA-EB-A6QZ-01 1 87025615 87025615 G T CLCA4 Missense_Mutation p.D54Y 0.17 deleterious(0) probably_damaging(0.91) TCGA-EB-A6QZ-01 20 10286841 10286841 G A SNAP25 Missense_Mutation p.G206D 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A6QZ-01 20 13797545 13797545 C T NDUFAF5 Missense_Mutation p.S296L 0.42 deleterious(0.01) possibly_damaging(0.613) TCGA-EB-A6QZ-01 20 26084080 26084080 G A NCOR1P1 RNA 0.22 TCGA-EB-A6QZ-01 20 33594310 33594310 G A TRPC4AP Silent p.L585L 0.46 TCGA-EB-A6QZ-01 20 39990834 39990834 C T EMILIN3 Missense_Mutation p.G459R 0.51 tolerated(0.49) benign(0.016) TCGA-EB-A6QZ-01 20 40116347 40116347 G A CHD6 Silent p.T653T 0.46 TCGA-EB-A6QZ-01 20 42635229 42635229 C T TOX2 Missense_Mutation p.P70S 0.38 deleterious(0) probably_damaging(0.995) TCGA-EB-A6QZ-01 20 58571597 58571597 G C CDH26 Intron 0.40 TCGA-EB-A6QZ-01 21 31655131 31655131 G A KRTAP24-1 Silent p.S40S 0.40 TCGA-EB-A6QZ-01 21 32624370 32624370 C T TIAM1 Missense_Mutation p.G367S 0.41 tolerated(0.72) benign(0.066) TCGA-EB-A6QZ-01 21 41160105 41160105 C T IGSF5 Nonsense_Mutation p.Q316* 0.32 TCGA-EB-A6QZ-01 21 42080588 42080588 G A DSCAM Silent p.I51I 0.37 TCGA-EB-A6QZ-01 22 20128527 20128527 C T ZDHHC8 Missense_Mutation p.R296C 0.42 deleterious(0) possibly_damaging(0.847) TCGA-EB-A6QZ-01 22 22324585 22324585 G A TOP3B Missense_Mutation p.T193I 0.44 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QZ-01 22 23742697 23742697 C T ZDHHC8P1 RNA 0.41 TCGA-EB-A6QZ-01 22 27003979 27003979 G A CRYBB1 Silent p.V102V 0.26 TCGA-EB-A6QZ-01 22 29833664 29833664 A T RFPL1 5'Flank 0.50 TCGA-EB-A6QZ-01 22 30824731 30824731 C T MTFP1 3'UTR 0.47 TCGA-EB-A6QZ-01 22 30824732 30824732 C T MTFP1 3'UTR 0.49 TCGA-EB-A6QZ-01 22 31487256 31487256 C T SMTN Missense_Mutation p.P416L 0.29 deleterious(0) probably_damaging(0.968) TCGA-EB-A6QZ-01 22 36587498 36587498 G T APOL4 Silent p.P226P 0.48 TCGA-EB-A6QZ-01 22 43608537 43608537 C T SCUBE1 Silent p.V705V 0.40 TCGA-EB-A6QZ-01 2 102956661 102956661 G A IL1RL1 Missense_Mutation p.E126K 0.39 tolerated(0.24) possibly_damaging(0.61) TCGA-EB-A6QZ-01 2 103120167 103120167 G A SLC9A4 Splice_Site p.X327_splice 0.52 TCGA-EB-A6QZ-01 2 109380511 109380511 T C RANBP2 Silent p.F1172F 0.51 TCGA-EB-A6QZ-01 2 119735075 119735075 G A MARCO Silent p.G214G 0.32 TCGA-EB-A6QZ-01 2 136111037 136111037 C T ZRANB3 Silent p.Q114Q 0.59 TCGA-EB-A6QZ-01 2 141457909 141457909 C T LRP1B Missense_Mutation p.G2237S 0.46 possibly_damaging(0.855) TCGA-EB-A6QZ-01 2 141625327 141625327 G A LRP1B Missense_Mutation p.H1471Y 0.48 benign(0) TCGA-EB-A6QZ-01 2 145147407 145147407 C T ZEB2 Missense_Mutation p.E1086K 0.53 deleterious(0) probably_damaging(0.978) TCGA-EB-A6QZ-01 2 145147408 145147408 C T ZEB2 Silent p.A1085A 0.53 TCGA-EB-A6QZ-01 2 163000624 163000624 G A GCG Missense_Mutation p.S150F 0.36 deleterious(0) probably_damaging(0.981) TCGA-EB-A6QZ-01 2 168726366 168726366 C T B3GALT1 Nonsense_Mutation p.R273* 0.51 TCGA-EB-A6QZ-01 2 170029612 170029612 C T LRP2 Missense_Mutation p.G3713S 0.46 possibly_damaging(0.718) TCGA-EB-A6QZ-01 2 172822971 172822971 C T HAT1 Missense_Mutation p.T218I 0.51 tolerated(0.74) benign(0.215) TCGA-EB-A6QZ-01 2 177036457 177036457 G A HOXD3 Missense_Mutation p.D252N 0.35 deleterious(0) benign(0) TCGA-EB-A6QZ-01 2 179603056 179603056 G A TTN Silent p.P4708P 0.21 TCGA-EB-A6QZ-01 2 179603057 179603057 G A TTN Missense_Mutation p.P4708L 0.21 TCGA-EB-A6QZ-01 2 186673435 186673435 G A FSIP2 Missense_Mutation p.D6557N 0.44 benign(0.006) TCGA-EB-A6QZ-01 2 187693133 187693133 G A ZSWIM2 Missense_Mutation p.P494S 0.58 tolerated(0.22) benign(0.305) TCGA-EB-A6QZ-01 2 196740510 196740510 G A DNAH7 Missense_Mutation p.P2059S 0.53 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QZ-01 2 203682235 203682235 G A ICA1L Missense_Mutation p.S197F 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-EB-A6QZ-01 2 203846897 203846897 A G CARF Missense_Mutation p.I598V 0.29 tolerated_low_confidence(0.96) benign(0.002) TCGA-EB-A6QZ-01 2 206165251 206165251 C T PARD3B Intron 0.42 TCGA-EB-A6QZ-01 2 21232573 21232573 G A APOB Silent p.Y2389Y 0.37 TCGA-EB-A6QZ-01 2 219222261 219222261 G A C2orf62 Silent p.K41K 0.47 TCGA-EB-A6QZ-01 2 219892656 219892656 C T CCDC108 Missense_Mutation p.D643N 0.56 tolerated(0.07) benign(0.233) TCGA-EB-A6QZ-01 2 233715079 233715079 G A GIGYF2 Silent p.K1285K 0.56 TCGA-EB-A6QZ-01 2 242572482 242572482 C T THAP4 Missense_Mutation p.E364K 0.29 deleterious(0.04) benign(0.004) TCGA-EB-A6QZ-01 2 26806672 26806672 C T CIB4 Missense_Mutation p.M141I 0.41 tolerated(0.2) benign(0.001) TCGA-EB-A6QZ-01 2 27481769 27481769 C T SLC30A3 Silent p.E43E 0.41 TCGA-EB-A6QZ-01 2 58386811 58386838 GCTTTATTTTTTCTCTGAAGATGATACC - VRK2 Missense_Mutation 0.23 TCGA-EB-A6QZ-01 2 69757182 69757182 G C AAK1 Missense_Mutation p.P277A 0.29 deleterious(0) unknown(0) TCGA-EB-A6QZ-01 2 96944310 96944310 G A SNRNP200 Silent p.Y1821Y 0.26 TCGA-EB-A6QZ-01 2 97363878 97363878 G A FER1L5 RNA 0.57 TCGA-EB-A6QZ-01 2 97532091 97532091 C T SEMA4C Missense_Mutation p.G63R 0.50 tolerated(0.31) probably_damaging(0.941) TCGA-EB-A6QZ-01 3 108672519 108672519 G A GUCA1C Missense_Mutation p.P31S 0.85 deleterious(0) probably_damaging(0.993) TCGA-EB-A6QZ-01 3 108836856 108836856 G A MORC1 Silent p.F17F 0.75 TCGA-EB-A6QZ-01 3 112648265 112648265 C T CD200R1 Missense_Mutation p.E98K 0.92 tolerated(0.47) probably_damaging(0.994) TCGA-EB-A6QZ-01 3 13612761 13612761 G A FBLN2 Silent p.R302R 1.00 TCGA-EB-A6QZ-01 3 141326576 141326576 G A RASA2 Missense_Mutation p.E664K 0.75 tolerated(0.25) benign(0.423) TCGA-EB-A6QZ-01 3 141904626 141904626 G A GK5 Intron 0.82 TCGA-EB-A6QZ-01 3 142172059 142172059 G A ATR Silent p.L2558L 0.88 TCGA-EB-A6QZ-01 3 155198604 155198604 T A PLCH1 3'UTR 0.75 TCGA-EB-A6QZ-01 3 172835147 172835147 C T SPATA16 Missense_Mutation p.M125I 0.83 tolerated(0.27) benign(0.001) TCGA-EB-A6QZ-01 3 178546007 178546007 C T KCNMB2 Missense_Mutation p.S90F 0.83 tolerated(0.09) probably_damaging(0.948) TCGA-EB-A6QZ-01 3 42733407 42733407 C T KLHL40 Silent p.V596V 0.83 TCGA-EB-A6QZ-01 3 48455158 48455158 G A PLXNB1 Missense_Mutation p.P1486S 0.80 deleterious(0) probably_damaging(0.998) TCGA-EB-A6QZ-01 3 52817260 52817260 G A ITIH1 Missense_Mutation p.G377E 0.88 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QZ-01 4 100504592 100504592 G A MTTP Missense_Mutation p.G104E 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A6QZ-01 4 126411653 126411653 C T FAT4 Missense_Mutation p.P4559L 0.37 probably_damaging(0.998) TCGA-EB-A6QZ-01 4 128732660 128732660 C T HSPA4L Missense_Mutation p.R483C 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 4 153573855 153573855 G A TMEM154 Missense_Mutation p.L97F 0.42 tolerated(0.84) benign(0.001) TCGA-EB-A6QZ-01 4 156268877 156268877 A G MAP9 3'UTR 0.52 TCGA-EB-A6QZ-01 4 157999217 157999217 C T GLRB Missense_Mutation p.S14F 0.44 tolerated_low_confidence(0.08) benign(0.136) TCGA-EB-A6QZ-01 4 162307376 162307376 G T FSTL5 Missense_Mutation p.F689L 0.16 tolerated(0.63) benign(0.004) TCGA-EB-A6QZ-01 4 185074772 185074772 C G ENPP6 Missense_Mutation p.G119A 0.42 deleterious(0.01) probably_damaging(1) TCGA-EB-A6QZ-01 4 25005729 25005729 C T LGI2 Missense_Mutation p.D328N 0.45 deleterious(0.01) probably_damaging(1) TCGA-EB-A6QZ-01 4 40351137 40351137 G T CHRNA9 Nonsense_Mutation p.E202* 0.50 TCGA-EB-A6QZ-01 4 44177004 44177004 T A KCTD8 Missense_Mutation p.N409Y 0.40 deleterious(0.04) probably_damaging(0.99) TCGA-EB-A6QZ-01 4 48490573 48490573 G A SLC10A4 Missense_Mutation p.G311S 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 4 52752763 52752763 A T DCUN1D4 Missense_Mutation p.M125L 0.40 deleterious(0.01) benign(0.126) TCGA-EB-A6QZ-01 4 57182478 57182478 C T KIAA1211 Missense_Mutation p.P937L 0.47 tolerated(0.37) possibly_damaging(0.851) TCGA-EB-A6QZ-01 4 6051580 6051580 A G JAKMIP1 Missense_Mutation p.L643P 0.53 deleterious(0.02) probably_damaging(1) TCGA-EB-A6QZ-01 4 73956716 73956716 C T ANKRD17 Missense_Mutation p.R2210K 0.40 benign(0.007) TCGA-EB-A6QZ-01 4 74274453 74274453 G A ALB Missense_Mutation p.R138Q 0.50 tolerated(0.33) benign(0) TCGA-EB-A6QZ-01 4 75938153 75938153 G A PARM1 Missense_Mutation p.G188R 0.49 tolerated(0.07) benign(0.006) TCGA-EB-A6QZ-01 4 85741318 85741318 G A WDFY3 Missense_Mutation p.S538L 0.38 tolerated(0.34) benign(0.001) TCGA-EB-A6QZ-01 5 100231378 100231378 G A ST8SIA4 Silent p.S75S 0.40 TCGA-EB-A6QZ-01 5 100231379 100231379 G A ST8SIA4 Missense_Mutation p.S75F 0.39 probably_damaging(0.962) TCGA-EB-A6QZ-01 5 109065199 109065199 A G MAN2A1 Missense_Mutation p.K231R 0.32 tolerated(0.76) benign(0.198) TCGA-EB-A6QZ-01 5 111066729 111066729 G A NREP Silent p.V76V 0.46 TCGA-EB-A6QZ-01 5 112384984 112384984 C T MCC Missense_Mutation p.E821K 0.52 deleterious(0) probably_damaging(0.98) TCGA-EB-A6QZ-01 5 112769450 112769450 C T TSSK1B Missense_Mutation p.E363K 0.47 deleterious_low_confidence(0.01) benign(0) TCGA-EB-A6QZ-01 5 118970109 118970109 G A FAM170A Silent p.V222V 0.46 TCGA-EB-A6QZ-01 5 121188472 121188472 C T FTMT 3'UTR 0.35 TCGA-EB-A6QZ-01 5 126758424 126758424 C T MEGF10 Silent p.H551H 0.28 TCGA-EB-A6QZ-01 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.48 benign(0) TCGA-EB-A6QZ-01 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.45 TCGA-EB-A6QZ-01 5 140625626 140625626 G A PCDHB15 Silent p.L160L 0.55 TCGA-EB-A6QZ-01 5 140762830 140762830 G A PCDHGA7 Missense_Mutation p.E122K 0.51 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EB-A6QZ-01 5 140798899 140798899 C T PCDHGB7 Silent p.L491L 0.42 TCGA-EB-A6QZ-01 5 141242917 141242917 C T PCDH1 Silent p.V993V 0.91 TCGA-EB-A6QZ-01 5 14477000 14477000 C T TRIO Intron 0.41 TCGA-EB-A6QZ-01 5 173382928 173382928 T C CPEB4 Missense_Mutation p.Y660H 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A6QZ-01 5 175795841 175795841 G A ARL10 Nonsense_Mutation p.W139* 0.37 TCGA-EB-A6QZ-01 5 178138951 178138951 G A ZNF354A 3'UTR 0.48 TCGA-EB-A6QZ-01 5 179755296 179755296 C T GFPT2 Missense_Mutation p.G193R 0.39 deleterious(0) benign(0.385) TCGA-EB-A6QZ-01 5 179998424 179998424 G A CNOT6 Missense_Mutation p.D485N 0.55 tolerated(0.11) benign(0.014) TCGA-EB-A6QZ-01 5 180374522 180374522 C T BTNL8 Silent p.F228F 0.44 TCGA-EB-A6QZ-01 5 180377187 180377187 G T BTNL8 Silent p.L382L 0.46 TCGA-EB-A6QZ-01 5 19747051 19747051 C T CDH18 Missense_Mutation p.G175S 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A6QZ-01 5 31305348 31305348 C T CDH6 Missense_Mutation p.P356L 0.39 tolerated(0.05) benign(0.04) TCGA-EB-A6QZ-01 5 41051174 41051174 T C MROH2B Missense_Mutation p.N417D 0.50 tolerated(0.12) benign(0.007) TCGA-EB-A6QZ-01 5 87501742 87501742 A G TMEM161B Missense_Mutation p.F230S 0.51 deleterious(0.01) benign(0.082) TCGA-EB-A6QZ-01 5 89979602 89979602 C T GPR98 Missense_Mutation p.S1955F 0.46 probably_damaging(0.962) TCGA-EB-A6QZ-01 5 89979993 89979993 G A GPR98 Silent p.A2085A 0.53 TCGA-EB-A6QZ-01 5 94830395 94830395 G A TTC37 Missense_Mutation p.L1265F 0.41 tolerated(0.05) benign(0.12) TCGA-EB-A6QZ-01 6 152722325 152722325 G A SYNE1 Missense_Mutation p.S2326L 0.83 benign(0.003) TCGA-EB-A6QZ-01 6 163235288 163235288 C T PACRG Missense_Mutation p.S89L 0.83 tolerated(0.23) benign(0.322) TCGA-EB-A6QZ-01 6 26413772 26413772 A G BTN3A1 Missense_Mutation p.D465G 0.47 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 6 31730939 31730939 C T SAPCD1 Silent p.F36F 0.43 TCGA-EB-A6QZ-01 6 36294348 36294348 C T C6orf222 Silent p.K325K 0.40 TCGA-EB-A6QZ-01 6 3850771 3850778 CATCCTGC - FAM50B Frame_Shift_Del p.I243Afs*28 0.50 TCGA-EB-A6QZ-01 6 43251674 43251674 G A TTBK1 Missense_Mutation p.G1066S 0.47 probably_damaging(0.998) TCGA-EB-A6QZ-01 6 53761687 53761687 T C LRRC1 Silent p.N188N 0.55 TCGA-EB-A6QZ-01 6 55929411 55929411 C A COL21A1 Nonsense_Mutation p.G713* 0.54 TCGA-EB-A6QZ-01 6 56044618 56044618 C T COL21A1 Missense_Mutation p.R133Q 0.46 deleterious(0.01) probably_damaging(1) TCGA-EB-A6QZ-01 6 56323690 56323690 G T DST 3'UTR 0.55 TCGA-EB-A6QZ-01 6 74063752 74063752 G A DPPA5 Missense_Mutation p.P39L 0.79 deleterious(0.01) benign(0.138) TCGA-EB-A6QZ-01 7 100732093 100732093 G A TRIM56 Silent p.R500R 0.40 TCGA-EB-A6QZ-01 7 119915286 119915286 C T KCND2 Silent p.I200I 0.28 TCGA-EB-A6QZ-01 7 128488930 128488930 T G FLNC Missense_Mutation p.S1607R 0.53 tolerated(0.12) possibly_damaging(0.713) TCGA-EB-A6QZ-01 7 130038601 130038601 G C CEP41 3'UTR 0.31 TCGA-EB-A6QZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-EB-A6QZ-01 7 141722237 141722237 G A MGAM Missense_Mutation p.G294R 0.35 tolerated(0.13) benign(0.013) TCGA-EB-A6QZ-01 7 142104519 142104519 G A TRBV6-9 Missense_Mutation p.S12F 0.30 tolerated(0.09) benign(0.005) TCGA-EB-A6QZ-01 7 142168459 142168459 G A TRBV5-4 Silent p.F88F 0.38 TCGA-EB-A6QZ-01 7 142566474 142566474 C T EPHB6 Missense_Mutation p.P755S 0.36 tolerated(1) possibly_damaging(0.646) TCGA-EB-A6QZ-01 7 150327191 150327191 G A GIMAP6 Missense_Mutation p.P14S 0.37 tolerated(0.14) unknown(0) TCGA-EB-A6QZ-01 7 20198549 20198549 C T MACC1 Missense_Mutation p.E479K 0.51 tolerated(0.18) benign(0.01) TCGA-EB-A6QZ-01 7 39379403 39379403 C T POU6F2 Missense_Mutation p.P225L 0.30 tolerated_low_confidence(0.65) unknown(0) TCGA-EB-A6QZ-01 7 56155395 56155395 A G PHKG1 Missense_Mutation p.V53A 0.33 tolerated(0.07) benign(0.012) TCGA-EB-A6QZ-01 7 82545020 82545020 G A PCLO Silent p.F4094F 0.47 TCGA-EB-A6QZ-01 7 82545021 82545021 A T PCLO Missense_Mutation p.F4094Y 0.47 unknown(0) TCGA-EB-A6QZ-01 7 82582113 82582113 C T PCLO Missense_Mutation p.G2719E 0.35 unknown(0) TCGA-EB-A6QZ-01 7 82784829 82784829 A T PCLO Silent p.T376T 0.07 TCGA-EB-A6QZ-01 7 82997054 82997054 C T SEMA3E Missense_Mutation p.E726K 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A6QZ-01 7 98460820 98460820 C T TMEM130 Missense_Mutation p.G97S 0.56 tolerated(0.35) benign(0.131) TCGA-EB-A6QZ-01 8 106431422 106431422 G A ZFPM2 Missense_Mutation p.E31K 0.49 tolerated(0.73) benign(0.003) TCGA-EB-A6QZ-01 8 113585828 113585828 A G CSMD3 Missense_Mutation p.M1315T 0.47 deleterious(0.03) benign(0.328) TCGA-EB-A6QZ-01 8 125551345 125551345 C T TATDN1 5'Flank 0.42 TCGA-EB-A6QZ-01 8 22442859 22442859 G A PDLIM2 Missense_Mutation p.G413S 0.46 tolerated(0.05) possibly_damaging(0.757) TCGA-EB-A6QZ-01 8 24259557 24259557 G A ADAMDEC1 Silent p.G424G 0.42 TCGA-EB-A6QZ-01 8 24350570 24350570 G A ADAM7 Missense_Mutation p.G557E 0.48 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 8 27394339 27394339 G A EPHX2 Silent p.R403R 0.45 TCGA-EB-A6QZ-01 8 39872921 39872921 G A IDO2 Missense_Mutation p.E355K 0.48 tolerated(0.27) benign(0.012) TCGA-EB-A6QZ-01 8 73849751 73849751 G A KCNB2 Missense_Mutation p.E721K 0.44 tolerated_low_confidence(0.23) benign(0.044) TCGA-EB-A6QZ-01 8 77616502 77616502 C T ZFHX4 Missense_Mutation p.A60V 0.50 benign(0) TCGA-EB-A6QZ-01 8 77616503 77616503 C T ZFHX4 Silent p.A60A 0.50 TCGA-EB-A6QZ-01 8 86572808 86572808 C G REXO1L1P 3'UTR 0.50 TCGA-EB-A6QZ-01 8 87151851 87151851 C T ATP6V0D2 Silent p.I156I 0.42 TCGA-EB-A6QZ-01 8 93017319 93017319 C T RUNX1T1 Intron 0.43 TCGA-EB-A6QZ-01 9 107361542 107361542 C T OR13C5 Silent p.L51L 0.63 TCGA-EB-A6QZ-01 9 115024776 115024776 G A PTBP3 Missense_Mutation p.P186L 0.80 tolerated(0.05) benign(0.079) TCGA-EB-A6QZ-01 9 115024777 115024777 G A PTBP3 Missense_Mutation p.P186S 0.80 tolerated(0.39) benign(0.014) TCGA-EB-A6QZ-01 9 116930345 116930345 G A COL27A1 Silent p.L170L 0.92 TCGA-EB-A6QZ-01 9 126144500 126144500 G A DENND1A Silent p.A747A 0.71 TCGA-EB-A6QZ-01 9 14819311 14819311 C T FREM1 Missense_Mutation p.G823R 0.81 deleterious(0) probably_damaging(1) TCGA-EB-A6QZ-01 9 2182173 2182173 A T SMARCA2 Silent p.L1464L 0.83 TCGA-EB-A6QZ-01 9 33467424 33467424 G A NOL6 Missense_Mutation p.L565F 0.82 deleterious(0) possibly_damaging(0.782) TCGA-EB-A6QZ-01 9 39085709 39085709 G A CNTNAP3 Intron 0.90 TCGA-EB-A6QZ-01 X 10094257 10094257 A T WWC3 Nonsense_Mutation p.R673* 0.79 TCGA-EB-A6QZ-01 X 105150455 105150455 C T NRK Silent p.F298F 0.80 TCGA-EB-A6QZ-01 X 107170294 107170294 C T MID2 Silent p.T733T 0.73 TCGA-EB-A6QZ-01 X 132833921 132833921 A C GPC3 Splice_Site p.X412_splice 0.80 TCGA-EB-A6QZ-01 X 151303278 151303278 G A MAGEA10 Missense_Mutation p.T272I 0.82 deleterious(0) probably_damaging(0.986) TCGA-EB-A6QZ-01 X 151366229 151366229 G A GABRA3 Silent p.F269F 0.79 TCGA-EB-A6QZ-01 X 19021223 19021223 C T GPR64 Silent p.R657R 0.79 TCGA-EB-A6QZ-01 X 3239874 3239874 C T MXRA5 Silent p.L1284L 0.81 TCGA-EB-A6QZ-01 X 47861996 47861996 G A ZNF182 Intron 0.79 TCGA-EB-A6QZ-01 X 48652655 48652655 C T GATA1 3'UTR 0.69 TCGA-EB-A6QZ-01 X 76938536 76938536 G A ATRX Missense_Mutation p.L738F 0.85 probably_damaging(0.997) TCGA-EB-A6R0-01 10 131506272 131506272 C T MGMT Missense_Mutation p.P111L 0.67 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 10 16941139 16941139 G A CUBN Silent p.S2818S 0.18 TCGA-EB-A6R0-01 10 27702444 27702444 C T PTCHD3 Missense_Mutation p.G246R 0.59 tolerated(0.09) benign(0.121) TCGA-EB-A6R0-01 10 44139642 44139642 G A ZNF32 Silent p.F226F 0.65 TCGA-EB-A6R0-01 10 54040620 54040620 C T PRKG1 Missense_Mutation p.S492F 0.65 deleterious(0.01) possibly_damaging(0.622) TCGA-EB-A6R0-01 10 63760013 63760013 C T ARID5B Silent p.I222I 0.58 TCGA-EB-A6R0-01 10 64974053 64974053 G A JMJD1C Missense_Mutation p.S625F 0.71 deleterious(0) possibly_damaging(0.474) TCGA-EB-A6R0-01 10 89717673 89717674 - AC PTEN Frame_Shift_Ins p.R234Hfs*23 0.41 TCGA-EB-A6R0-01 10 91099144 91099144 C T IFIT3 Silent p.L244L 0.58 TCGA-EB-A6R0-01 11 1020233 1020233 G A MUC6 Missense_Mutation p.P1222L 0.30 unknown(0) TCGA-EB-A6R0-01 11 1083068 1083068 G A MUC2 Silent p.K656K 0.31 TCGA-EB-A6R0-01 11 1083069 1083069 G T MUC2 Missense_Mutation p.D657Y 0.31 probably_damaging(0.987) TCGA-EB-A6R0-01 11 113775635 113775635 C T HTR3B 5'UTR 0.33 TCGA-EB-A6R0-01 11 113934829 113934829 G A ZBTB16 Silent p.G269G 0.40 TCGA-EB-A6R0-01 11 113934830 113934830 G A ZBTB16 Missense_Mutation p.D270N 0.41 tolerated(0.12) benign(0.023) TCGA-EB-A6R0-01 11 120348212 120348212 C T ARHGEF12 Missense_Mutation p.S1170L 0.43 deleterious_low_confidence(0.04) benign(0.071) TCGA-EB-A6R0-01 11 124761347 124761347 G A ROBO4 Missense_Mutation p.P599L 0.38 tolerated(0.5) probably_damaging(0.999) TCGA-EB-A6R0-01 11 17464764 17464764 G A ABCC8 Silent p.F476F 0.42 TCGA-EB-A6R0-01 11 2154070 2154070 G A IGF2 3'UTR 0.36 TCGA-EB-A6R0-01 11 46393294 46393294 T G DGKZ Missense_Mutation p.F455C 0.37 deleterious(0.02) probably_damaging(0.971) TCGA-EB-A6R0-01 11 4673852 4673852 C T OR51E1 Silent p.F32F 0.35 TCGA-EB-A6R0-01 11 56185235 56185235 G A OR5R1 Silent p.F158F 0.39 TCGA-EB-A6R0-01 11 56954995 56954995 G A LRRC55 3'UTR 0.29 TCGA-EB-A6R0-01 11 57137380 57137380 C T P2RX3 Silent p.I368I 0.37 TCGA-EB-A6R0-01 11 58035342 58035342 G A OR10W1 5'UTR 0.22 TCGA-EB-A6R0-01 11 58723372 58723372 C T GLYATL1 Missense_Mutation p.P292S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A6R0-01 11 59830066 59830066 G A MS4A3 Nonsense_Mutation p.W94* 0.35 TCGA-EB-A6R0-01 11 62744182 62744182 C T SLC22A6 3'UTR 0.36 TCGA-EB-A6R0-01 11 65319531 65319531 G A LTBP3 Silent p.F481F 0.44 TCGA-EB-A6R0-01 11 66193563 66193563 G A NPAS4 3'UTR 0.44 TCGA-EB-A6R0-01 11 68517939 68517939 G A MTL5 Silent p.L64L 0.19 TCGA-EB-A6R0-01 11 68747582 68747582 G A MRGPRD Silent p.L292L 0.35 TCGA-EB-A6R0-01 11 72552558 72552558 G A FCHSD2 Missense_Mutation p.P666L 0.44 tolerated(0.05) possibly_damaging(0.905) TCGA-EB-A6R0-01 11 74415604 74415604 G A CHRDL2 Silent p.I226I 0.40 TCGA-EB-A6R0-01 11 92085738 92085738 C G FAT3 Missense_Mutation p.L154V 0.12 probably_damaging(0.997) TCGA-EB-A6R0-01 11 92085769 92085769 C G FAT3 Missense_Mutation p.S164C 0.15 probably_damaging(0.997) TCGA-EB-A6R0-01 11 92085892 92085892 C T FAT3 Missense_Mutation p.S205L 0.10 possibly_damaging(0.515) TCGA-EB-A6R0-01 11 92085914 92085914 C A FAT3 Silent p.V212V 0.12 TCGA-EB-A6R0-01 11 92085963 92085963 C G FAT3 Missense_Mutation p.L229V 0.18 probably_damaging(0.999) TCGA-EB-A6R0-01 11 92086292 92086292 C G FAT3 Silent p.P338P 0.29 TCGA-EB-A6R0-01 11 93844112 93844112 G A HEPHL1 Missense_Mutation p.G1030E 0.32 deleterious(0) probably_damaging(0.993) TCGA-EB-A6R0-01 11 94231498 94231498 C T ANKRD49 Missense_Mutation p.L174F 0.41 tolerated(0.74) benign(0.002) TCGA-EB-A6R0-01 12 10602539 10602539 G A KLRC1 Missense_Mutation p.S104F 0.20 tolerated(0.06) benign(0.049) TCGA-EB-A6R0-01 12 108686465 108686465 A T CMKLR1 Missense_Mutation p.L92H 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A6R0-01 12 110009501 110009501 G A MMAB Missense_Mutation p.S50L 0.46 tolerated(0.18) benign(0.004) TCGA-EB-A6R0-01 12 110246104 110246104 G A TRPV4 Nonsense_Mutation p.R186* 0.44 TCGA-EB-A6R0-01 12 115121125 115121125 A G TBX3 5'UTR 0.43 TCGA-EB-A6R0-01 12 120621919 120621919 G A GCN1L1 Missense_Mutation p.P105S 0.31 possibly_damaging(0.761) TCGA-EB-A6R0-01 12 125834278 125834278 G A TMEM132B Missense_Mutation p.M111I 0.38 deleterious(0.02) benign(0.012) TCGA-EB-A6R0-01 12 132562293 132562293 G A EP400 3'UTR 0.46 TCGA-EB-A6R0-01 12 14577124 14577124 C T ATF7IP Missense_Mutation p.P92L 0.29 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-EB-A6R0-01 12 20868142 20868142 G A SLCO1C1 Missense_Mutation p.G200E 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 12 32491875 32491875 G A BICD1 Missense_Mutation p.R909Q 0.38 tolerated_low_confidence(0.17) probably_damaging(0.945) TCGA-EB-A6R0-01 12 44782132 44782132 G A TMEM117 Missense_Mutation p.G408R 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 12 44782133 44782133 G A TMEM117 Missense_Mutation p.G408E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EB-A6R0-01 12 48736873 48736873 G A ZNF641 Silent p.F400F 0.39 TCGA-EB-A6R0-01 12 48866542 48866542 G A ANP32D Missense_Mutation p.G32D 0.38 deleterious(0) possibly_damaging(0.8) TCGA-EB-A6R0-01 12 48877045 48877045 C T C12orf54 5'UTR 0.43 TCGA-EB-A6R0-01 12 48962875 48962875 G A LALBA Silent p.I94I 0.35 TCGA-EB-A6R0-01 12 48962902 48962902 G A LALBA Silent p.V85V 0.34 TCGA-EB-A6R0-01 12 49319105 49319105 C T FKBP11 Missense_Mutation p.R36Q 0.27 tolerated(0.3) benign(0.011) TCGA-EB-A6R0-01 12 50149438 50149438 G A TMBIM6 Silent p.L120L 0.37 TCGA-EB-A6R0-01 12 5021087 5021087 C T KCNA1 Silent p.I181I 0.43 TCGA-EB-A6R0-01 12 52908750 52908750 G A KRT5 Silent p.S583S 0.31 TCGA-EB-A6R0-01 12 53494577 53494577 G A IGFBP6 Missense_Mutation p.R139K 0.42 tolerated(0.76) benign(0.005) TCGA-EB-A6R0-01 12 54676220 54676220 G A HNRNPA1 Missense_Mutation p.R178K 0.39 tolerated(0.15) benign(0.12) TCGA-EB-A6R0-01 12 551273 551273 C T CCDC77 3'UTR 0.50 TCGA-EB-A6R0-01 12 55863714 55863714 G A OR6C70 Missense_Mutation p.S70L 0.35 tolerated_low_confidence(0.15) benign(0.005) TCGA-EB-A6R0-01 12 56030754 56030754 C T OR10P1 Silent p.L27L 0.38 TCGA-EB-A6R0-01 12 56088041 56088041 C T ITGA7 Missense_Mutation p.G815R 0.33 deleterious(0.02) benign(0.422) TCGA-EB-A6R0-01 12 56092572 56092572 G A ITGA7 Missense_Mutation p.P311L 0.32 tolerated(0.09) probably_damaging(0.969) TCGA-EB-A6R0-01 12 56428804 56428804 C T IKZF4 Missense_Mutation p.P483S 0.36 tolerated(0.52) benign(0.002) TCGA-EB-A6R0-01 12 56995394 56995394 G A BAZ2A Missense_Mutation p.P1338L 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-EB-A6R0-01 12 56995395 56995395 G A BAZ2A Missense_Mutation p.P1338S 0.40 tolerated(0.31) probably_damaging(0.998) TCGA-EB-A6R0-01 12 57397463 57397463 C T ZBTB39 Nonsense_Mutation p.W413* 0.41 TCGA-EB-A6R0-01 12 57454696 57454696 G A TMEM194A Missense_Mutation p.P338L 0.35 tolerated(0.1) probably_damaging(0.995) TCGA-EB-A6R0-01 12 57641969 57641969 G A STAC3 Missense_Mutation p.H149Y 0.36 deleterious(0) benign(0.03) TCGA-EB-A6R0-01 12 6058122 6058122 C T VWF 3'UTR 0.40 TCGA-EB-A6R0-01 12 62688066 62688066 G T USP15 Missense_Mutation p.D66Y 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-EB-A6R0-01 12 6472997 6472997 G A SCNN1A Intron 0.30 TCGA-EB-A6R0-01 12 66747232 66747232 G A GRIP1 Missense_Mutation p.L990F 0.34 tolerated(0.38) benign(0.246) TCGA-EB-A6R0-01 12 81593149 81593149 G A ACSS3 Missense_Mutation p.R427Q 0.24 deleterious(0) benign(0.231) TCGA-EB-A6R0-01 12 9147719 9147719 C T KLRG1 Silent p.S64S 0.47 TCGA-EB-A6R0-01 13 103718247 103718247 C T SLC10A2 Nonsense_Mutation p.W118* 0.31 TCGA-EB-A6R0-01 13 32910710 32910710 C T BRCA2 Missense_Mutation p.P740S 0.43 deleterious(0.02) benign(0.135) TCGA-EB-A6R0-01 13 33681035 33681035 G A STARD13 Silent p.T1028T 0.36 TCGA-EB-A6R0-01 13 48571129 48571129 G A SUCLA2 Silent p.N40N 0.37 TCGA-EB-A6R0-01 13 70281853 70281853 G A KLHL1 Silent p.L697L 0.39 TCGA-EB-A6R0-01 14 103566602 103566602 C T EXOC3L4 Missense_Mutation p.P16S 0.25 tolerated(0.12) benign(0.064) TCGA-EB-A6R0-01 14 103566603 103566603 C T EXOC3L4 Missense_Mutation p.P16L 0.25 deleterious(0.02) benign(0.06) TCGA-EB-A6R0-01 14 106174289 106174289 C T IGHA1 Missense_Mutation p.G167E 0.38 tolerated(0.07) possibly_damaging(0.814) TCGA-EB-A6R0-01 14 106174290 106174290 C T IGHA1 Missense_Mutation p.G167R 0.36 deleterious(0) probably_damaging(0.99) TCGA-EB-A6R0-01 14 106552703 106552703 G A IGHV3-9 Silent p.F9F 0.33 TCGA-EB-A6R0-01 14 107218810 107218810 C T IGHV3-74 Missense_Mutation p.D73N 0.39 tolerated_low_confidence(0.32) benign(0.003) TCGA-EB-A6R0-01 14 20002242 20002242 C T POTEM Missense_Mutation p.E394K 0.19 deleterious(0.02) benign(0.036) TCGA-EB-A6R0-01 14 23854206 23854206 C T MYH6 Silent p.L1736L 0.43 TCGA-EB-A6R0-01 14 23863082 23863082 G A MYH6 Silent p.C907C 0.45 TCGA-EB-A6R0-01 14 24534407 24534407 C T LRRC16B Silent p.C1107C 0.35 TCGA-EB-A6R0-01 14 24884840 24884840 C T NYNRIN Silent p.F1295F 0.20 TCGA-EB-A6R0-01 14 26917742 26917742 G A NOVA1 Missense_Mutation p.T316I 0.38 tolerated(0.09) benign(0.001) TCGA-EB-A6R0-01 14 39815204 39815204 T G CTAGE5 Missense_Mutation p.F648C 0.40 deleterious(0.03) benign(0.047) TCGA-EB-A6R0-01 14 52735054 52735054 C T PTGDR Silent p.F174F 0.36 TCGA-EB-A6R0-01 14 65009010 65009010 C T HSPA2 Silent p.F481F 0.31 TCGA-EB-A6R0-01 14 65268025 65268025 G A SPTB Silent p.I247I 0.30 TCGA-EB-A6R0-01 14 73727421 73727421 G A PAPLN Missense_Mutation p.G637R 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 14 76330191 76330191 C T TTLL5 Nonsense_Mutation p.R1170* 0.32 TCGA-EB-A6R0-01 14 78325491 78325491 C T ADCK1 Nonsense_Mutation p.Q98* 0.47 TCGA-EB-A6R0-01 14 80997169 80997169 T A CEP128 Missense_Mutation p.D981V 0.11 deleterious(0) possibly_damaging(0.888) TCGA-EB-A6R0-01 14 94914523 94914523 G A SERPINA11 Missense_Mutation p.P197S 0.36 deleterious(0.03) benign(0.197) TCGA-EB-A6R0-01 14 96782876 96782876 G A ATG2B Missense_Mutation p.H1119Y 0.33 deleterious(0) possibly_damaging(0.838) TCGA-EB-A6R0-01 15 101529456 101529456 G A LRRK1 Silent p.G205G 0.44 TCGA-EB-A6R0-01 15 101845417 101845417 G A PCSK6 3'UTR 0.45 TCGA-EB-A6R0-01 15 20644372 20644372 G A HERC2P3 RNA 0.21 TCGA-EB-A6R0-01 15 22368906 22368906 G A OR4M2 Missense_Mutation p.E111K 0.13 tolerated(0.06) probably_damaging(0.997) TCGA-EB-A6R0-01 15 25458673 25458673 C T SNORD115-22 3'Flank 0.36 TCGA-EB-A6R0-01 15 25463551 25463551 G A SNORD115-27 5'Flank 0.35 TCGA-EB-A6R0-01 15 28460913 28460913 G A HERC2 Missense_Mutation p.R2022W 0.32 possibly_damaging(0.619) TCGA-EB-A6R0-01 15 43815528 43815528 G A MAP1A Silent p.E619E 0.42 TCGA-EB-A6R0-01 15 54556543 54556543 A C UNC13C Missense_Mutation p.Q1209P 0.55 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EB-A6R0-01 15 59323288 59323288 C T RNF111 Silent p.L89L 0.32 TCGA-EB-A6R0-01 15 62538711 62538711 G A AC126323.1 5'Flank 0.33 TCGA-EB-A6R0-01 15 73848703 73848703 G A C15orf60 Missense_Mutation p.G203R 0.31 tolerated(0.06) benign(0.048) TCGA-EB-A6R0-01 15 74738490 74738490 C A UBL7 Missense_Mutation p.A362S 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A6R0-01 15 85164887 85164887 C T ZSCAN2 Silent p.S487S 0.30 TCGA-EB-A6R0-01 15 89872201 89872201 G A POLG Silent p.S332S 0.36 TCGA-EB-A6R0-01 15 89872202 89872202 G A POLG Missense_Mutation p.S332F 0.38 tolerated(0.4) benign(0.187) TCGA-EB-A6R0-01 15 91292603 91292603 C T BLM Silent p.F35F 0.38 TCGA-EB-A6R0-01 16 11001317 11001317 C T CIITA Silent p.A656A 0.21 TCGA-EB-A6R0-01 16 11001318 11001318 C T CIITA Silent p.L657L 0.21 TCGA-EB-A6R0-01 16 1712516 1712516 C T CRAMP1L Silent p.L813L 0.39 TCGA-EB-A6R0-01 16 2122880 2122880 C T TSC2 Nonsense_Mutation p.R751* 0.34 TCGA-EB-A6R0-01 16 21854859 21854859 G T NPIPB4 Silent p.S131S 0.12 TCGA-EB-A6R0-01 16 24802845 24802845 C T TNRC6A Missense_Mutation p.A961V 0.28 deleterious(0.01) benign(0.424) TCGA-EB-A6R0-01 16 28331516 28331516 C T SBK1 Silent p.F183F 0.35 TCGA-EB-A6R0-01 16 2871568 2871568 C T PRSS21 Missense_Mutation p.P303S 0.26 tolerated(0.21) unknown(0) TCGA-EB-A6R0-01 16 30594016 30594016 G A ZNF785 Silent p.I361I 0.40 TCGA-EB-A6R0-01 16 53190711 53190711 C T CHD9 Missense_Mutation p.P237L 0.32 benign(0.072) TCGA-EB-A6R0-01 16 56875699 56875699 C T NUP93 Missense_Mutation p.P768L 0.35 tolerated(0.34) benign(0.006) TCGA-EB-A6R0-01 16 57054729 57054729 C T NLRC5 Silent p.F35F 0.35 TCGA-EB-A6R0-01 16 57731937 57731937 G A CCDC135 Missense_Mutation p.A26T 0.38 tolerated_low_confidence(0.08) unknown(0) TCGA-EB-A6R0-01 16 57918242 57918242 C T CNGB1 Silent p.G1194G 0.33 TCGA-EB-A6R0-01 16 66997444 66997444 G A CES3 Missense_Mutation p.G113E 0.33 tolerated(0.64) benign(0.093) TCGA-EB-A6R0-01 16 67261022 67261022 C T TMEM208 5'UTR 0.45 TCGA-EB-A6R0-01 16 71610272 71610272 G A TAT Missense_Mutation p.S16L 0.61 tolerated_low_confidence(0.06) benign(0.077) TCGA-EB-A6R0-01 16 77389932 77389932 C T ADAMTS18 Silent p.K455K 0.61 TCGA-EB-A6R0-01 17 18220216 18220216 C T SMCR8 Silent p.L371L 0.38 TCGA-EB-A6R0-01 17 18284933 18284933 G A EVPLL Missense_Mutation p.E79K 0.26 deleterious(0.01) probably_damaging(0.913) TCGA-EB-A6R0-01 17 18661778 18661778 G A FBXW10 Missense_Mutation p.E465K 0.24 tolerated(0.52) benign(0.327) TCGA-EB-A6R0-01 17 21730718 21730718 C T UBBP4 Missense_Mutation p.T7I 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-EB-A6R0-01 17 21730719 21730719 C T UBBP4 Silent p.T7T 0.38 TCGA-EB-A6R0-01 17 3343629 3343629 G A SPATA22 Missense_Mutation p.R302C 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 17 40693051 40693051 C T NAGLU Missense_Mutation p.P283L 0.40 deleterious(0.03) possibly_damaging(0.672) TCGA-EB-A6R0-01 17 45699267 45699267 C T NPEPPS Missense_Mutation p.A914V 0.37 tolerated_low_confidence(0.1) benign(0.05) TCGA-EB-A6R0-01 17 5009643 5009643 G A ZNF232 Missense_Mutation p.P271S 0.32 tolerated(0.43) possibly_damaging(0.803) TCGA-EB-A6R0-01 17 56232705 56232705 G A OR4D1 Missense_Mutation p.R64Q 0.39 tolerated(0.39) benign(0.015) TCGA-EB-A6R0-01 17 59480532 59480532 C T TBX2 Silent p.T258T 0.27 TCGA-EB-A6R0-01 17 61271431 61271431 C T TANC2 Silent p.L97L 0.38 TCGA-EB-A6R0-01 17 62081178 62081178 C T ICAM2 Missense_Mutation p.E159K 0.47 tolerated(0.58) benign(0) TCGA-EB-A6R0-01 17 72428112 72428112 C T GPRC5C 5'UTR 0.40 TCGA-EB-A6R0-01 17 72541039 72541039 C T CD300C Missense_Mutation p.G37R 0.36 tolerated(0.18) probably_damaging(0.952) TCGA-EB-A6R0-01 17 73732202 73732202 C T ITGB4 Silent p.P576P 0.40 TCGA-EB-A6R0-01 17 73733715 73733715 C T ITGB4 Missense_Mutation p.A737V 0.35 deleterious(0.01) benign(0.033) TCGA-EB-A6R0-01 17 74057633 74057633 C T SRP68 Missense_Mutation p.G195E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EB-A6R0-01 17 7475968 7475968 C T SENP3 3'Flank 0.25 TCGA-EB-A6R0-01 17 7605808 7605808 G A WRAP53 Missense_Mutation p.G368R 0.51 deleterious(0) probably_damaging(0.986) TCGA-EB-A6R0-01 17 76399860 76399860 C T PGS1 Silent p.I364I 0.41 TCGA-EB-A6R0-01 17 7701538 7701538 G A DNAH2 Missense_Mutation p.G2765D 0.37 probably_damaging(0.994) TCGA-EB-A6R0-01 17 79278699 79278699 G A LINC00482 RNA 0.48 TCGA-EB-A6R0-01 17 79507977 79507977 C T C17orf70 Splice_Site p.X839_splice 0.31 TCGA-EB-A6R0-01 17 79864051 79864051 C T PCYT2 Silent p.E272E 0.33 TCGA-EB-A6R0-01 17 8170376 8170376 C T PFAS Silent p.L1000L 0.37 TCGA-EB-A6R0-01 17 9739745 9739745 G A GLP2R Missense_Mutation p.G112E 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 18 12720575 12720575 T C PSMG2 Silent p.L158L 0.61 TCGA-EB-A6R0-01 18 28720061 28720061 T G DSC1 Missense_Mutation p.Q488H 0.38 deleterious(0) possibly_damaging(0.549) TCGA-EB-A6R0-01 18 31803214 31803214 C T NOL4 Missense_Mutation p.E2K 0.43 tolerated_low_confidence(0.34) probably_damaging(0.979) TCGA-EB-A6R0-01 18 31803215 31803215 C T NOL4 Translation_Start_Site p.M1? 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.758) TCGA-EB-A6R0-01 18 55274424 55274424 A T NARS Missense_Mutation p.F315I 0.35 deleterious(0) probably_damaging(0.992) TCGA-EB-A6R0-01 18 60036100 60036100 C T TNFRSF11A Missense_Mutation p.P317L 0.38 tolerated(0.09) benign(0.113) TCGA-EB-A6R0-01 18 6971961 6971961 A G LAMA1 Missense_Mutation p.V2265A 0.45 deleterious(0.04) possibly_damaging(0.714) TCGA-EB-A6R0-01 19 10106293 10106293 C T COL5A3 Missense_Mutation p.G512S 0.23 unknown(0) TCGA-EB-A6R0-01 19 11040197 11040197 C T C19orf52 Missense_Mutation p.P201L 0.39 tolerated(0.11) benign(0.004) TCGA-EB-A6R0-01 19 11123688 11123688 G A SMARCA4 Missense_Mutation p.E780K 0.38 probably_damaging(0.999) TCGA-EB-A6R0-01 19 11762821 11762821 C T ZNF833P RNA 0.36 TCGA-EB-A6R0-01 19 13264502 13264502 G A IER2 Missense_Mutation p.E168K 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A6R0-01 19 15166846 15166846 G A CASP14 Silent p.R225R 0.35 TCGA-EB-A6R0-01 19 15342594 15342594 C T EPHX3 Missense_Mutation p.E108K 0.36 deleterious(0) possibly_damaging(0.903) TCGA-EB-A6R0-01 19 22000746 22000746 T C ZNF43 Missense_Mutation p.Q58R 0.36 tolerated(0.06) benign(0.298) TCGA-EB-A6R0-01 19 35829244 35829244 C T CD22 Missense_Mutation p.L387F 0.39 tolerated(0.54) benign(0.035) TCGA-EB-A6R0-01 19 35832288 35832288 C T CD22 Missense_Mutation p.S517F 0.46 deleterious(0.03) possibly_damaging(0.726) TCGA-EB-A6R0-01 19 35832289 35832289 C T CD22 Silent p.S517S 0.45 TCGA-EB-A6R0-01 19 36334400 36334400 G A NPHS1 Missense_Mutation p.P770S 0.39 tolerated(0.32) benign(0.349) TCGA-EB-A6R0-01 19 36362812 36362812 G A APLP1 Missense_Mutation p.D242N 0.41 tolerated(0.37) benign(0.189) TCGA-EB-A6R0-01 19 37643255 37643255 G A ZNF585A Missense_Mutation p.H461Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-EB-A6R0-01 19 38103904 38103904 G A ZNF540 Missense_Mutation p.G575S 0.38 deleterious(0.05) probably_damaging(0.994) TCGA-EB-A6R0-01 19 39966764 39966764 T G SUPT5H Missense_Mutation p.V1023G 0.34 deleterious(0) benign(0.347) TCGA-EB-A6R0-01 19 4117509 4117509 C T MAP2K2 Missense_Mutation p.D71N 0.41 tolerated(0.07) benign(0.275) TCGA-EB-A6R0-01 19 41497309 41497309 G A CYP2B6 Silent p.G33G 0.34 TCGA-EB-A6R0-01 19 42085709 42085709 C T CEACAM21 Missense_Mutation p.S143L 0.32 tolerated(0.17) benign(0.014) TCGA-EB-A6R0-01 19 4216990 4216990 C T ANKRD24 Silent p.T611T 0.32 TCGA-EB-A6R0-01 19 44513320 44513320 C T ZNF230 Missense_Mutation p.S76L 0.39 tolerated(0.11) benign(0.011) TCGA-EB-A6R0-01 19 4513417 4513417 C T PLIN4 Silent p.G171G 0.39 TCGA-EB-A6R0-01 19 46443951 46443951 C T NOVA2 Missense_Mutation p.V217M 0.55 deleterious(0) unknown(0) TCGA-EB-A6R0-01 19 47572547 47572547 G A ZC3H4 Missense_Mutation p.P734S 0.38 unknown(0) TCGA-EB-A6R0-01 19 4818213 4818213 G A TICAM1 Silent p.I59I 0.54 TCGA-EB-A6R0-01 19 49631370 49631370 G A PPFIA3 Silent p.Q80Q 0.31 TCGA-EB-A6R0-01 19 50155938 50155938 G A SCAF1 Silent p.R764R 0.45 TCGA-EB-A6R0-01 19 50906773 50906773 C T POLD1 Silent p.I387I 0.38 TCGA-EB-A6R0-01 19 51021323 51021323 C T LRRC4B Silent p.T549T 0.42 TCGA-EB-A6R0-01 19 51411723 51411723 C T KLK4 Silent p.V168V 0.39 TCGA-EB-A6R0-01 19 51411917 51411917 G A KLK4 Silent p.T131T 0.43 TCGA-EB-A6R0-01 19 52272604 52272604 G A FPR2 Silent p.K231K 0.33 TCGA-EB-A6R0-01 19 52538108 52538108 C T ZNF432 Missense_Mutation p.R275H 0.31 tolerated(0.32) benign(0.019) TCGA-EB-A6R0-01 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.42 tolerated(0.26) probably_damaging(0.999) TCGA-EB-A6R0-01 19 55086340 55086340 C G LILRA2 Silent p.R165R 0.31 TCGA-EB-A6R0-01 19 55143386 55143386 G A LILRB1 Missense_Mutation p.G120E 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-EB-A6R0-01 19 57088341 57088341 C T ZNF470 Missense_Mutation p.H182Y 0.29 tolerated(0.58) benign(0.305) TCGA-EB-A6R0-01 19 5748189 5748189 T C CATSPERD Missense_Mutation p.V276A 0.35 tolerated(0.06) probably_damaging(0.93) TCGA-EB-A6R0-01 19 5748190 5748190 C T CATSPERD Silent p.V276V 0.35 TCGA-EB-A6R0-01 19 5748191 5748191 C G CATSPERD Missense_Mutation p.R277G 0.33 tolerated(0.35) benign(0.433) TCGA-EB-A6R0-01 19 57646552 57646552 G A ZIM3 Missense_Mutation p.H385Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-EB-A6R0-01 19 5783704 5783704 G A PRR22 Missense_Mutation p.P185L 0.19 deleterious(0) benign(0.018) TCGA-EB-A6R0-01 19 6426478 6426478 G A SLC25A41 Silent p.P345P 0.28 TCGA-EB-A6R0-01 19 9204418 9204418 C T OR1M1 Silent p.L166L 0.41 TCGA-EB-A6R0-01 19 9578790 9578790 A G ZNF560 Missense_Mutation p.L278S 0.41 tolerated(0.6) possibly_damaging(0.86) TCGA-EB-A6R0-01 1 1018303 1018303 G A C1orf159 Silent p.F189F 0.40 TCGA-EB-A6R0-01 1 102290680 102290680 G A OLFM3 Missense_Mutation p.T165I 0.46 tolerated(0.21) benign(0.002) TCGA-EB-A6R0-01 1 104113014 104113014 C T AMY2B Intron 0.21 TCGA-EB-A6R0-01 1 110581824 110581824 C T STRIP1 Missense_Mutation p.T119I 0.18 tolerated(0.19) benign(0.002) TCGA-EB-A6R0-01 1 12428572 12428572 G A VPS13D Missense_Mutation p.G3500R 0.48 possibly_damaging(0.801) TCGA-EB-A6R0-01 1 12815748 12815748 G A C1orf158 Silent p.G70G 0.43 TCGA-EB-A6R0-01 1 152777866 152777866 G A LCE1C Missense_Mutation p.P30L 0.56 tolerated_low_confidence(0.18) unknown(0) TCGA-EB-A6R0-01 1 153410797 153410797 G A S100A7L2 Silent p.I14I 0.49 TCGA-EB-A6R0-01 1 156622474 156622474 C T BCAN Missense_Mutation p.P578S 0.22 tolerated(0.08) benign(0.027) TCGA-EB-A6R0-01 1 156811992 156811992 C A INSRR Missense_Mutation p.M1103I 0.47 deleterious(0) probably_damaging(0.996) TCGA-EB-A6R0-01 1 160249280 160249280 G A PEX19 3'UTR 0.54 TCGA-EB-A6R0-01 1 161069391 161069391 G A KLHDC9 Missense_Mutation p.E231K 0.31 deleterious(0.02) benign(0.11) TCGA-EB-A6R0-01 1 17965132 17965132 C T ARHGEF10L Missense_Mutation p.H707Y 0.53 deleterious(0) benign(0.162) TCGA-EB-A6R0-01 1 197072410 197072410 T C ASPM Missense_Mutation p.K1991E 0.46 tolerated(0.21) benign(0.05) TCGA-EB-A6R0-01 1 197390404 197390404 C T CRB1 Silent p.I482I 0.39 TCGA-EB-A6R0-01 1 197890479 197890479 C T LHX9 Silent p.S141S 0.44 TCGA-EB-A6R0-01 1 205350876 205350876 G A LEMD1 Silent p.F152F 0.45 TCGA-EB-A6R0-01 1 205500561 205500561 C T CDK18 3'UTR 0.54 TCGA-EB-A6R0-01 1 207753909 207753909 C T CR1 Missense_Mutation p.P1723S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A6R0-01 1 215955440 215955440 C T USH2A Missense_Mutation p.E3562K 0.23 benign(0.111) TCGA-EB-A6R0-01 1 223286310 223286310 G A TLR5 Missense_Mutation p.P22S 0.33 tolerated(0.88) benign(0.009) TCGA-EB-A6R0-01 1 224345374 224345374 C T FBXO28 Missense_Mutation p.P345S 0.46 tolerated(0.22) benign(0.42) TCGA-EB-A6R0-01 1 224495926 224495926 G A NVL Missense_Mutation p.R128W 0.50 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EB-A6R0-01 1 227152834 227152834 C T ADCK3 Missense_Mutation p.P104L 0.38 tolerated_low_confidence(0.11) benign(0.034) TCGA-EB-A6R0-01 1 22846707 22846707 A T ZBTB40 Missense_Mutation p.H996L 0.43 deleterious(0) possibly_damaging(0.537) TCGA-EB-A6R0-01 1 240969496 240969496 C T RGS7 Missense_Mutation p.D405N 0.48 deleterious(0.01) benign(0.286) TCGA-EB-A6R0-01 1 2409971 2409971 G A PLCH2 Missense_Mutation p.G34S 0.33 tolerated(0.5) benign(0.05) TCGA-EB-A6R0-01 1 247588838 247588838 G A NLRP3 Missense_Mutation p.G698D 0.36 tolerated(0.31) benign(0.157) TCGA-EB-A6R0-01 1 46752028 46752028 G A LRRC41 Silent p.L167L 0.45 TCGA-EB-A6R0-01 1 52704247 52704247 C T ZFYVE9 Silent p.F386F 0.24 TCGA-EB-A6R0-01 1 62718764 62718764 C T KANK4 Missense_Mutation p.G886E 0.25 deleterious(0) benign(0.169) TCGA-EB-A6R0-01 1 62740499 62740499 G A KANK4 Missense_Mutation p.P93S 0.28 tolerated(0.37) benign(0.027) TCGA-EB-A6R0-01 1 79412050 79412050 T G ELTD1 Silent p.T78T 0.26 TCGA-EB-A6R0-01 20 1559154 1559154 C T RP4-576H24.4 Missense_Mutation p.R87Q 0.85 deleterious(0.01) possibly_damaging(0.884) TCGA-EB-A6R0-01 20 1592331 1592331 C T SIRPB1 Intron 0.81 TCGA-EB-A6R0-01 20 17596615 17596615 C T RRBP1 Missense_Mutation p.D870N 0.46 tolerated(0.55) possibly_damaging(0.728) TCGA-EB-A6R0-01 20 24523737 24523737 G A SYNDIG1 Missense_Mutation p.D2N 0.32 deleterious_low_confidence(0.04) benign(0.068) TCGA-EB-A6R0-01 20 25004125 25004125 C T ACSS1 Missense_Mutation p.D262N 0.49 tolerated(0.31) benign(0.008) TCGA-EB-A6R0-01 20 32000486 32000486 G C SNTA1 Silent p.V268V 0.20 TCGA-EB-A6R0-01 20 34022080 34022080 C T GDF5 Missense_Mutation p.R378Q 0.32 deleterious(0) benign(0.106) TCGA-EB-A6R0-01 20 3640518 3640518 G A GFRA4 3'Flank 0.55 TCGA-EB-A6R0-01 20 36640801 36640801 C T TTI1 Missense_Mutation p.R473K 0.33 tolerated(0.45) benign(0.005) TCGA-EB-A6R0-01 20 37005464 37005464 C T LBP 3'UTR 0.55 TCGA-EB-A6R0-01 20 41076895 41076895 G A PTPRT Missense_Mutation p.P509S 0.47 deleterious(0) possibly_damaging(0.82) TCGA-EB-A6R0-01 20 41514573 41514573 C T PTPRT Splice_Site p.X30_splice 0.54 TCGA-EB-A6R0-01 20 50701526 50701526 G A ZFP64 Missense_Mutation p.S503F 0.44 deleterious(0) probably_damaging(0.996) TCGA-EB-A6R0-01 20 58883571 58883571 C T MIR646 RNA 0.36 TCGA-EB-A6R0-01 20 60883209 60883209 C T ADRM1 Missense_Mutation p.T330I 0.38 deleterious(0) unknown(0) TCGA-EB-A6R0-01 20 60989205 60989205 C T RBBP8NL Missense_Mutation p.G401E 0.42 tolerated(0.27) benign(0.201) TCGA-EB-A6R0-01 20 61460130 61460130 G A COL9A3 Silent p.K305K 0.21 TCGA-EB-A6R0-01 20 61537212 61537212 G T DIDO1 Intron 0.51 TCGA-EB-A6R0-01 20 61945100 61945100 G A COL20A1 Missense_Mutation p.V739M 0.35 tolerated(0.13) benign(0.065) TCGA-EB-A6R0-01 21 10933918 10933918 C T TPTE Missense_Mutation p.E321K 0.19 tolerated(0.08) possibly_damaging(0.574) TCGA-EB-A6R0-01 21 10934071 10934071 G A TPTE Silent p.I302I 0.16 TCGA-EB-A6R0-01 21 10942962 10942962 A T TPTE Missense_Mutation p.F209I 0.12 tolerated(0.18) benign(0.004) TCGA-EB-A6R0-01 21 10971337 10971337 G A TPTE Missense_Mutation p.P7L 0.19 deleterious_low_confidence(0.01) benign(0.013) TCGA-EB-A6R0-01 21 10998232 10998232 C T TPTE RNA 0.16 TCGA-EB-A6R0-01 21 11047514 11047514 C T BAGE2 RNA 0.09 TCGA-EB-A6R0-01 21 15599305 15599305 T G RBM11 Missense_Mutation p.D179E 0.35 tolerated_low_confidence(0.12) unknown(0) TCGA-EB-A6R0-01 21 15599306 15599306 C T RBM11 Missense_Mutation p.L180F 0.35 tolerated_low_confidence(0.44) unknown(0) TCGA-EB-A6R0-01 21 40250688 40250688 G A AF064858.6 RNA 0.35 TCGA-EB-A6R0-01 21 40636502 40636502 G A BRWD1 Missense_Mutation p.P590L 0.39 deleterious(0) probably_damaging(0.991) TCGA-EB-A6R0-01 21 43412114 43412114 G A ZBTB21 Silent p.P697P 0.36 TCGA-EB-A6R0-01 21 43783496 43783496 G A TFF1 Missense_Mutation p.R36C 0.35 deleterious(0.01) possibly_damaging(0.892) TCGA-EB-A6R0-01 21 43783497 43783497 G A TFF1 Silent p.P35P 0.35 TCGA-EB-A6R0-01 21 44108053 44108053 C T PDE9A Missense_Mutation p.T56I 0.29 tolerated(0.14) benign(0.004) TCGA-EB-A6R0-01 21 47981665 47981665 C T DIP2A Missense_Mutation p.R1346C 0.33 deleterious(0) probably_damaging(0.993) TCGA-EB-A6R0-01 21 47985766 47985766 C T DIP2A Silent p.F1435F 0.38 TCGA-EB-A6R0-01 22 16267014 16267014 C T POTEH Missense_Mutation p.G479S 0.13 deleterious(0.02) probably_damaging(0.969) TCGA-EB-A6R0-01 22 26164639 26164639 G A MYO18B Silent p.E252E 0.70 TCGA-EB-A6R0-01 22 30768245 30768245 C T CCDC157 Silent p.A435A 0.32 TCGA-EB-A6R0-01 22 30768246 30768246 C T CCDC157 Missense_Mutation p.R436C 0.35 deleterious(0) probably_damaging(0.995) TCGA-EB-A6R0-01 22 36587487 36587487 G A APOL4 Missense_Mutation p.S230F 0.53 deleterious(0) probably_damaging(0.996) TCGA-EB-A6R0-01 22 50941889 50941889 G A LMF2 Silent p.A685A 0.70 TCGA-EB-A6R0-01 2 136570134 136570134 G A LCT Silent p.I700I 0.52 TCGA-EB-A6R0-01 2 136579665 136579665 A C LCT Missense_Mutation p.I304R 0.22 deleterious(0.04) benign(0.014) TCGA-EB-A6R0-01 2 137814460 137814460 C T THSD7B Missense_Mutation p.R204C 0.15 deleterious(0) probably_damaging(0.992) TCGA-EB-A6R0-01 2 138163260 138163260 C T THSD7B Missense_Mutation p.L860F 0.49 deleterious(0.04) possibly_damaging(0.765) TCGA-EB-A6R0-01 2 141202246 141202246 C T LRP1B Missense_Mutation p.E3354K 0.11 benign(0.292) TCGA-EB-A6R0-01 2 141747174 141747174 G A LRP1B Silent p.I899I 0.09 TCGA-EB-A6R0-01 2 178969079 178969079 T A CYCTP RNA 0.20 TCGA-EB-A6R0-01 2 179454891 179454891 T A TTN Nonsense_Mutation p.K20521* 0.13 TCGA-EB-A6R0-01 2 179583502 179583502 G A TTN Missense_Mutation p.P8142L 0.41 TCGA-EB-A6R0-01 2 187703786 187703786 C T ZSWIM2 Missense_Mutation p.E132K 0.15 tolerated(0.21) possibly_damaging(0.848) TCGA-EB-A6R0-01 2 192280873 192280873 C T MYO1B Silent p.L1064L 0.47 TCGA-EB-A6R0-01 2 201434636 201434636 C T SGOL2 Intron 0.23 TCGA-EB-A6R0-01 2 213872194 213872194 C T IKZF2 Missense_Mutation p.G491S 0.46 deleterious(0) possibly_damaging(0.619) TCGA-EB-A6R0-01 2 219000690 219000690 C T CXCR2 3'UTR 0.10 TCGA-EB-A6R0-01 2 224856533 224856533 G A SERPINE2 Silent p.S236S 0.18 TCGA-EB-A6R0-01 2 227896691 227896691 G A COL4A4 Nonsense_Mutation p.Q1263* 0.38 TCGA-EB-A6R0-01 2 239176763 239176763 G A PER2 Nonsense_Mutation p.Q301* 0.09 TCGA-EB-A6R0-01 2 241404087 241404087 T A GPC1 Missense_Mutation p.V313D 0.71 deleterious(0) possibly_damaging(0.882) TCGA-EB-A6R0-01 2 26684616 26684616 C T OTOF Silent p.R1827R 0.46 TCGA-EB-A6R0-01 2 3197843 3197843 C T TSSC1 Missense_Mutation p.D250N 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-EB-A6R0-01 2 39249722 39249722 T C SOS1 Missense_Mutation p.H616R 0.14 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 2 39249731 39249731 A C SOS1 Missense_Mutation p.L613R 0.13 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 2 56420531 56420531 A G CCDC85A Missense_Mutation p.E399G 0.29 deleterious(0) benign(0.118) TCGA-EB-A6R0-01 2 63666900 63666900 T C WDPCP Missense_Mutation p.I164V 0.44 tolerated(0.21) probably_damaging(0.982) TCGA-EB-A6R0-01 2 71206311 71206312 - C ANKRD53 Frame_Shift_Ins p.R87Pfs*3 0.35 TCGA-EB-A6R0-01 2 74687855 74687855 C T WBP1 3'UTR 0.53 TCGA-EB-A6R0-01 3 108813892 108813892 C T MORC1 Nonsense_Mutation p.W149* 0.67 TCGA-EB-A6R0-01 3 108813893 108813893 C T MORC1 Nonsense_Mutation p.W149* 0.63 TCGA-EB-A6R0-01 3 11059024 11059024 G A SLC6A1 Missense_Mutation p.D43N 0.35 deleterious(0.01) benign(0.318) TCGA-EB-A6R0-01 3 121340634 121340634 C T FBXO40 Missense_Mutation p.P120S 0.35 tolerated(0.54) benign(0.133) TCGA-EB-A6R0-01 3 128780776 128780776 C T GP9 Missense_Mutation p.S65F 0.41 deleterious(0) probably_damaging(0.968) TCGA-EB-A6R0-01 3 129267901 129267901 C T H1FOO Missense_Mutation p.P146S 0.30 tolerated(0.17) benign(0.111) TCGA-EB-A6R0-01 3 130283929 130283929 C T COL6A6 Silent p.F251F 0.30 TCGA-EB-A6R0-01 3 130449167 130449167 C T PIK3R4 Missense_Mutation p.G524R 0.36 tolerated(0.62) benign(0.203) TCGA-EB-A6R0-01 3 13378310 13378310 C T NUP210 Missense_Mutation p.D1221N 0.29 deleterious(0) benign(0.334) TCGA-EB-A6R0-01 3 13378311 13378311 C T NUP210 Silent p.L1220L 0.30 TCGA-EB-A6R0-01 3 141884297 141884297 G A GK5 3'UTR 0.33 TCGA-EB-A6R0-01 3 151012994 151012994 C T GPR87 Missense_Mutation p.E14K 0.33 tolerated_low_confidence(0.14) benign(0.015) TCGA-EB-A6R0-01 3 15283043 15283043 C T CAPN7 Missense_Mutation p.P579L 0.39 deleterious(0.05) possibly_damaging(0.706) TCGA-EB-A6R0-01 3 16242149 16242149 G A GALNT15 Missense_Mutation p.E244K 0.37 tolerated(0.12) possibly_damaging(0.815) TCGA-EB-A6R0-01 3 172025191 172025191 C T FNDC3B Missense_Mutation p.S367F 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 3 180369256 180369256 G A CCDC39 Missense_Mutation p.T367I 0.50 deleterious(0) possibly_damaging(0.817) TCGA-EB-A6R0-01 3 192078232 192078232 C T FGF12 Missense_Mutation p.E99K 0.33 deleterious(0.01) possibly_damaging(0.472) TCGA-EB-A6R0-01 3 24003829 24003829 A G NR1D2 Silent p.Q293Q 0.35 TCGA-EB-A6R0-01 3 32399018 32399018 C T CMTM8 Nonsense_Mutation p.Q101* 0.37 TCGA-EB-A6R0-01 3 38739144 38739144 G A SCN10A Missense_Mutation p.T1856I 0.41 tolerated(0.52) benign(0.066) TCGA-EB-A6R0-01 3 42572294 42572294 C T VIPR1 Silent p.V220V 0.38 TCGA-EB-A6R0-01 3 46399257 46399257 A T CCR2 Missense_Mutation p.Y80F 0.40 tolerated(0.08) benign(0.174) TCGA-EB-A6R0-01 3 47859514 47859514 C T DHX30 Missense_Mutation p.R11W 0.42 deleterious_low_confidence(0) benign(0.287) TCGA-EB-A6R0-01 3 48618755 48618755 C T COL7A1 Missense_Mutation p.G1613R 0.42 unknown(0) TCGA-EB-A6R0-01 3 49897295 49897295 G A CAMKV Missense_Mutation p.T321I 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-EB-A6R0-01 3 51863460 51863460 G A IQCF3 5'UTR 0.26 TCGA-EB-A6R0-01 3 52398945 52398945 C T DNAH1 Missense_Mutation p.P1810S 0.37 probably_damaging(0.998) TCGA-EB-A6R0-01 3 54952473 54952473 G A LRTM1 3'UTR 0.34 TCGA-EB-A6R0-01 4 100266053 100266053 G A ADH1C Missense_Mutation p.S178L 0.34 possibly_damaging(0.464) TCGA-EB-A6R0-01 4 100738096 100738096 G A DAPP1 Missense_Mutation p.G9E 0.29 tolerated_low_confidence(0.42) benign(0.001) TCGA-EB-A6R0-01 4 125591547 125591547 G A ANKRD50 Missense_Mutation p.A962V 0.38 tolerated(0.3) benign(0.124) TCGA-EB-A6R0-01 4 155488836 155488836 C T FGB Silent p.N194N 0.46 TCGA-EB-A6R0-01 4 158256915 158256915 C T GRIA2 Silent p.I453I 0.45 TCGA-EB-A6R0-01 4 162307613 162307613 G A FSTL5 Intron 0.30 TCGA-EB-A6R0-01 4 164272421 164272421 G A NPY5R Silent p.G332G 0.34 TCGA-EB-A6R0-01 4 25005432 25005432 G - LGI2 Frame_Shift_Del p.R427Efs*20 0.32 TCGA-EB-A6R0-01 4 39347067 39347067 G A RFC1 Silent p.F54F 0.31 TCGA-EB-A6R0-01 4 41750451 41750451 G A PHOX2B Silent p.S59S 0.34 TCGA-EB-A6R0-01 4 47562984 47562984 T A ATP10D Missense_Mutation p.Y854N 0.33 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 4 69972896 69972896 C T UGT2B7 Silent p.L336L 0.35 TCGA-EB-A6R0-01 4 70156400 70156400 C T UGT2B28 Missense_Mutation p.P394L 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 4 70359453 70359453 G A UGT2B4 Silent p.F276F 0.32 TCGA-EB-A6R0-01 4 72317017 72317017 C T SLC4A4 Missense_Mutation p.R441W 0.50 deleterious(0.01) possibly_damaging(0.466) TCGA-EB-A6R0-01 4 79420928 79420928 C T FRAS1 Missense_Mutation p.P3057S 0.36 benign(0.103) TCGA-EB-A6R0-01 4 9943595 9943595 G A SLC2A9 Silent p.L252L 0.41 TCGA-EB-A6R0-01 5 110814206 110814206 G A CAMK4 Splice_Site p.X276_splice 0.38 TCGA-EB-A6R0-01 5 111540140 111540140 G A EPB41L4A Silent p.F436F 0.32 TCGA-EB-A6R0-01 5 120022129 120022129 C T PRR16 Missense_Mutation p.H191Y 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A6R0-01 5 121188183 121188183 G A FTMT Silent p.L175L 0.34 TCGA-EB-A6R0-01 5 130775297 130775297 G A RAPGEF6 Missense_Mutation p.S1249F 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EB-A6R0-01 5 134782525 134782525 C T C5orf20 Missense_Mutation p.G92R 0.27 tolerated_low_confidence(0.55) benign(0.021) TCGA-EB-A6R0-01 5 137419667 137419667 C T WNT8A 5'Flank 0.41 TCGA-EB-A6R0-01 5 140236438 140236438 G A PCDHA10 Missense_Mutation p.D269N 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-EB-A6R0-01 5 140307683 140307683 C T PCDHAC1 Silent p.P402P 0.39 TCGA-EB-A6R0-01 5 140616347 140616347 G A PCDHB18 RNA 0.39 TCGA-EB-A6R0-01 5 140741753 140741753 C T PCDHGB2 Missense_Mutation p.P684L 0.38 deleterious(0.04) benign(0.029) TCGA-EB-A6R0-01 5 151239359 151239359 G A GLRA1 Missense_Mutation p.L155F 0.42 deleterious(0.05) possibly_damaging(0.723) TCGA-EB-A6R0-01 5 156908007 156908007 G A ADAM19 Missense_Mutation p.P903S 0.39 tolerated_low_confidence(0.06) benign(0.09) TCGA-EB-A6R0-01 5 15928576 15928576 C T FBXL7 Silent p.S235S 0.49 TCGA-EB-A6R0-01 5 15936668 15936668 C T FBXL7 Silent p.F283F 0.33 TCGA-EB-A6R0-01 5 161119169 161119169 C T GABRA6 Missense_Mutation p.S350L 0.34 tolerated(0.28) benign(0.226) TCGA-EB-A6R0-01 5 1878354 1878354 G A IRX4 Missense_Mutation p.S430F 0.70 deleterious(0) probably_damaging(0.99) TCGA-EB-A6R0-01 5 23527434 23527434 A T PRDM9 Missense_Mutation p.K746M 0.34 deleterious(0) probably_damaging(0.997) TCGA-EB-A6R0-01 5 32087274 32087274 G A PDZD2 Silent p.G1240G 0.35 TCGA-EB-A6R0-01 5 35010214 35010214 A G AGXT2 Missense_Mutation p.V410A 0.38 deleterious(0) possibly_damaging(0.85) TCGA-EB-A6R0-01 5 35910576 35910576 A G CAPSL Silent p.N69N 0.33 TCGA-EB-A6R0-01 5 35965769 35965769 G A UGT3A1 Missense_Mutation p.P188S 0.31 tolerated(0.41) benign(0) TCGA-EB-A6R0-01 5 42718612 42718612 G A GHR Missense_Mutation p.E335K 0.33 tolerated(0.05) probably_damaging(0.953) TCGA-EB-A6R0-01 5 75954302 75954302 C T IQGAP2 Missense_Mutation p.P780L 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 5 80381692 80381692 C T RASGRF2 Silent p.S411S 0.34 TCGA-EB-A6R0-01 5 80608505 80608505 T C ZCCHC9 3'UTR 0.39 TCGA-EB-A6R0-01 6 117243304 117243304 G A RFX6 Missense_Mutation p.R476K 0.36 tolerated(1) benign(0.004) TCGA-EB-A6R0-01 6 118887310 118887311 TC A CEP85L Frame_Shift_Del p.G137Vfs*12 0.32 TCGA-EB-A6R0-01 6 127902402 127902402 G A C6orf58 Missense_Mutation p.D217N 0.38 tolerated(0.31) benign(0.044) TCGA-EB-A6R0-01 6 128540108 128540108 C T PTPRK Missense_Mutation p.R276Q 0.37 tolerated(0.31) possibly_damaging(0.552) TCGA-EB-A6R0-01 6 129637295 129637295 G A LAMA2 Missense_Mutation p.G1346E 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 6 132029932 132029932 G A CTAGE9 Silent p.F742F 0.31 TCGA-EB-A6R0-01 6 151914317 151914317 C T CCDC170 Missense_Mutation p.R457W 0.35 deleterious(0) probably_damaging(0.921) TCGA-EB-A6R0-01 6 152476174 152476174 G A SYNE1 Silent p.I7994I 0.39 TCGA-EB-A6R0-01 6 157495228 157495228 C T ARID1B Missense_Mutation p.P1038S 0.23 benign(0.02) TCGA-EB-A6R0-01 6 160679389 160679389 G A SLC22A2 Missense_Mutation p.S134F 0.48 deleterious(0) probably_damaging(0.981) TCGA-EB-A6R0-01 6 163483255 163483255 C T PACRG Missense_Mutation p.P122L 0.39 deleterious(0) possibly_damaging(0.873) TCGA-EB-A6R0-01 6 26045966 26045966 C T HIST1H3C Silent p.L110L 0.50 TCGA-EB-A6R0-01 6 27775605 27775605 C G HIST1H2BL Missense_Mutation p.G27A 0.35 deleterious_low_confidence(0.03) benign(0.032) TCGA-EB-A6R0-01 6 29455236 29455236 G A MAS1L Silent p.F148F 0.45 TCGA-EB-A6R0-01 6 31846753 31846753 C T SLC44A4 Missense_Mutation p.G2E 0.26 deleterious(0.02) probably_damaging(0.979) TCGA-EB-A6R0-01 6 33174609 33174609 C T SLC39A7 3'Flank 0.50 TCGA-EB-A6R0-01 6 36297917 36297917 A T C6orf222 Nonsense_Mutation p.L184* 0.41 TCGA-EB-A6R0-01 6 36922491 36922491 C T PI16 5'UTR 0.18 TCGA-EB-A6R0-01 6 41160558 41160558 C T TREML2 Nonsense_Mutation p.W289* 0.45 TCGA-EB-A6R0-01 6 42185546 42185546 G A MRPS10 Silent p.L14L 0.44 TCGA-EB-A6R0-01 6 43307371 43307371 G A ZNF318 Silent p.P1455P 0.37 TCGA-EB-A6R0-01 6 43480870 43480870 G A YIPF3 Silent p.F201F 0.35 TCGA-EB-A6R0-01 6 49754491 49754491 C T PGK2 Missense_Mutation p.G137E 0.37 deleterious(0) possibly_damaging(0.86) TCGA-EB-A6R0-01 6 51923258 51923258 G A PKHD1 Missense_Mutation p.H459Y 0.38 tolerated(0.19) benign(0.009) TCGA-EB-A6R0-01 6 55378951 55378951 G A HMGCLL1 Missense_Mutation p.S176F 0.35 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 6 56472750 56472750 A G DST Intron 0.29 TCGA-EB-A6R0-01 6 62604680 62604680 G A KHDRBS2 Missense_Mutation p.R224W 0.44 deleterious(0) probably_damaging(0.94) TCGA-EB-A6R0-01 6 73951088 73951088 C T KHDC1 3'UTR 0.31 TCGA-EB-A6R0-01 6 76124489 76124489 C T FILIP1 Missense_Mutation p.R67Q 0.40 tolerated(0.47) benign(0.005) TCGA-EB-A6R0-01 6 84290301 84290301 C T SNAP91 Missense_Mutation p.D723N 0.43 tolerated(0.06) probably_damaging(0.987) TCGA-EB-A6R0-01 7 100459200 100459200 C T SLC12A9 Silent p.F510F 0.39 TCGA-EB-A6R0-01 7 100459201 100459201 C T SLC12A9 Missense_Mutation p.H511Y 0.39 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 7 100677772 100677772 C T MUC17 Silent p.P1025P 0.39 TCGA-EB-A6R0-01 7 100685187 100685187 C T MUC17 Missense_Mutation p.S3497L 0.35 possibly_damaging(0.587) TCGA-EB-A6R0-01 7 105645086 105645086 G A CDHR3 Silent p.V335V 0.14 TCGA-EB-A6R0-01 7 113518470 113518470 C T PPP1R3A Missense_Mutation p.D893N 0.37 tolerated(0.17) benign(0.01) TCGA-EB-A6R0-01 7 122033621 122033621 C T CADPS2 Missense_Mutation p.G921E 0.47 deleterious(0) probably_damaging(0.988) TCGA-EB-A6R0-01 7 138305846 138305846 C T SVOPL Missense_Mutation p.G433E 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A6R0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-EB-A6R0-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.52 deleterious(0) possibly_damaging(0.838) TCGA-EB-A6R0-01 7 141423004 141423004 G A WEE2 Silent p.K317K 0.26 TCGA-EB-A6R0-01 7 141490215 141490215 C T TAS2R5 Silent p.L18L 0.26 TCGA-EB-A6R0-01 7 141758122 141758122 C T MGAM Silent p.I1271I 0.55 TCGA-EB-A6R0-01 7 141758123 141758123 C T MGAM Missense_Mutation p.P1272S 0.55 deleterious(0.01) probably_damaging(1) TCGA-EB-A6R0-01 7 142168898 142168898 G A TRBV5-4 5'UTR 0.22 TCGA-EB-A6R0-01 7 142231820 142231820 C T TRBV10-1 Missense_Mutation p.E33K 0.29 tolerated(1) benign(0.003) TCGA-EB-A6R0-01 7 143141419 143141419 C T TAS2R60 Missense_Mutation p.H292Y 0.21 deleterious(0.04) benign(0.046) TCGA-EB-A6R0-01 7 143747715 143747715 C T OR2A5 Missense_Mutation p.S74F 0.29 deleterious(0) benign(0.112) TCGA-EB-A6R0-01 7 151257701 151257701 G A PRKAG2 Silent p.V529V 0.25 TCGA-EB-A6R0-01 7 158325497 158325497 G A PTPRN2 Intron 0.24 TCGA-EB-A6R0-01 7 34125493 34125493 G A BMPER Missense_Mutation p.D512N 0.33 tolerated(0.06) benign(0.289) TCGA-EB-A6R0-01 7 35129997 35129997 C T DPY19L2P1 RNA 0.47 TCGA-EB-A6R0-01 7 43351625 43351625 C T HECW1 Silent p.V97V 0.32 TCGA-EB-A6R0-01 7 57522804 57522804 G A ZNF716 Silent p.L64L 0.34 TCGA-EB-A6R0-01 7 71571178 71571178 C T CALN1 Missense_Mutation p.E116K 0.45 deleterious(0.02) benign(0.32) TCGA-EB-A6R0-01 7 72721450 72721450 G A NSUN5 Silent p.S147S 0.30 TCGA-EB-A6R0-01 7 72721451 72721451 G A NSUN5 Missense_Mutation p.S147F 0.30 tolerated(0.28) benign(0.006) TCGA-EB-A6R0-01 7 73450896 73450896 G A ELN Missense_Mutation p.G49R 0.38 unknown(0) TCGA-EB-A6R0-01 7 73450897 73450897 G A ELN Missense_Mutation p.G49E 0.37 unknown(0) TCGA-EB-A6R0-01 7 79764401 79764401 G A GNAI1 5'UTR 0.30 TCGA-EB-A6R0-01 7 81624251 81624251 C T CACNA2D1 Missense_Mutation p.R556Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A6R0-01 7 87760658 87760658 C T ADAM22 Silent p.A300A 0.43 TCGA-EB-A6R0-01 7 93101739 93101739 C T CALCR Missense_Mutation p.R144Q 0.40 deleterious(0.04) benign(0.011) TCGA-EB-A6R0-01 7 97949375 97949375 T C BAIAP2L1 Missense_Mutation p.M115V 0.44 deleterious(0.01) possibly_damaging(0.823) TCGA-EB-A6R0-01 7 99123458 99123458 G A ZKSCAN5 Missense_Mutation p.M265I 0.35 tolerated(0.35) benign(0.005) TCGA-EB-A6R0-01 7 99312301 99312301 G A CYP3A7 Silent p.V225V 0.35 TCGA-EB-A6R0-01 8 101727727 101727727 C T PABPC1 Missense_Mutation p.M202I 0.28 tolerated(0.12) benign(0.004) TCGA-EB-A6R0-01 8 106814337 106814337 C T ZFPM2 Missense_Mutation p.P676L 0.50 tolerated(0.09) benign(0.046) TCGA-EB-A6R0-01 8 110431459 110431459 G A PKHD1L1 Missense_Mutation p.G832R 0.46 deleterious(0) possibly_damaging(0.527) TCGA-EB-A6R0-01 8 110487451 110487451 G A PKHD1L1 Missense_Mutation p.D2904N 0.40 deleterious(0.01) benign(0.111) TCGA-EB-A6R0-01 8 113275929 113275929 G A CSMD3 Silent p.F3267F 0.41 TCGA-EB-A6R0-01 8 121238957 121238957 G A COL14A1 Silent p.G652G 0.45 TCGA-EB-A6R0-01 8 121706025 121706025 G A SNTB1 Missense_Mutation p.S232L 0.35 tolerated(0.24) benign(0.004) TCGA-EB-A6R0-01 8 131916027 131916027 C T ADCY8 Silent p.G634G 0.52 TCGA-EB-A6R0-01 8 135669945 135669945 G A ZFAT Missense_Mutation p.L19F 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A6R0-01 8 144733000 144733000 G A ZNF623 Missense_Mutation p.E320K 0.41 tolerated(0.19) probably_damaging(0.973) TCGA-EB-A6R0-01 8 22049656 22049656 C T BMP1 Missense_Mutation p.P391L 0.37 deleterious(0.04) benign(0.248) TCGA-EB-A6R0-01 8 22049657 22049657 C T BMP1 Silent p.P391P 0.37 TCGA-EB-A6R0-01 8 30700698 30700698 G A TEX15 Missense_Mutation p.P1946S 0.42 tolerated(1) benign(0.001) TCGA-EB-A6R0-01 8 30700844 30700844 C T TEX15 Nonsense_Mutation p.W1897* 0.34 TCGA-EB-A6R0-01 8 35425626 35425626 C T UNC5D Silent p.V111V 0.30 TCGA-EB-A6R0-01 8 39027517 39027517 G A ADAM32 Splice_Site p.X305_splice 0.35 TCGA-EB-A6R0-01 8 41519349 41519349 G A ANK1 Intron 0.34 TCGA-EB-A6R0-01 8 71553247 71553247 G A LACTB2 Nonsense_Mutation p.Q211* 0.46 TCGA-EB-A6R0-01 8 8239118 8239118 G A SGK223 Missense_Mutation p.P47L 0.40 probably_damaging(0.915) TCGA-EB-A6R0-01 8 86573756 86573756 G A REXO1L1P Silent p.R657R 0.33 TCGA-EB-A6R0-01 9 100433475 100433475 G A NCBP1 Silent p.Q789Q 0.59 TCGA-EB-A6R0-01 9 100433476 100433476 G A NCBP1 Missense_Mutation p.A790T 0.61 deleterious(0.01) benign(0.175) TCGA-EB-A6R0-01 9 104433336 104433336 C T GRIN3A Missense_Mutation p.G453D 0.63 tolerated(0.15) benign(0.005) TCGA-EB-A6R0-01 9 107361225 107361225 G T OR13C5 Missense_Mutation p.A157E 0.58 deleterious(0) possibly_damaging(0.734) TCGA-EB-A6R0-01 9 115336903 115336903 C T KIAA1958 Silent p.S181S 0.71 TCGA-EB-A6R0-01 9 117783347 117783347 C T TNC 3'UTR 0.64 TCGA-EB-A6R0-01 9 13222414 13222414 G C MPDZ Missense_Mutation p.L189V 0.81 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A6R0-01 9 139616654 139616654 G A FAM69B Silent p.R128R 0.76 TCGA-EB-A6R0-01 9 14851467 14851467 C T FREM1 Missense_Mutation p.E323K 0.79 tolerated(0.12) possibly_damaging(0.566) TCGA-EB-A6R0-01 9 18928258 18928258 G A FAM154A Missense_Mutation p.T406I 0.38 deleterious(0) probably_damaging(0.994) TCGA-EB-A6R0-01 9 35754072 35754072 C T MSMP Missense_Mutation p.G19R 0.87 tolerated(0.1) benign(0.01) TCGA-EB-A6R0-01 9 4860309 4860309 G A RCL1 3'UTR 0.24 TCGA-EB-A6R0-01 9 69112983 69112983 C T RP11-87H9.3 5'Flank 0.18 TCGA-EB-A6R0-01 9 87285838 87285838 G C NTRK2 Missense_Mutation p.E59Q 0.56 tolerated(0.55) benign(0.098) TCGA-EB-A6R0-01 9 95481509 95481509 C T BICD2 Missense_Mutation p.R473H 0.34 tolerated(0.14) possibly_damaging(0.832) TCGA-EB-A6R0-01 9 95840246 95840246 G A SUSD3 Silent p.V132V 0.65 TCGA-EB-A6R0-01 X 106171669 106171669 C T CLDN2 Silent p.L71L 0.39 TCGA-EB-A6R0-01 X 107414084 107414084 C T COL4A6 Missense_Mutation p.G1115E 0.37 probably_damaging(1) TCGA-EB-A6R0-01 X 111095577 111095577 C T TRPC5 Missense_Mutation p.M442I 0.44 tolerated(0.08) probably_damaging(0.957) TCGA-EB-A6R0-01 X 11162096 11162096 T C ARHGAP6 Intron 0.41 TCGA-EB-A6R0-01 X 115304540 115304540 C T AGTR2 Missense_Mutation p.P336L 0.43 tolerated(0.7) benign(0.003) TCGA-EB-A6R0-01 X 118220953 118220953 C T KIAA1210 Missense_Mutation p.G1414S 0.32 tolerated(0.86) benign(0.006) TCGA-EB-A6R0-01 X 119005117 119005117 G A RNF113A Missense_Mutation p.R154W 0.35 deleterious(0) benign(0.429) TCGA-EB-A6R0-01 X 119037548 119037548 C T AKAP14 Missense_Mutation p.S87L 0.41 tolerated(0.8) benign(0.175) TCGA-EB-A6R0-01 X 130408128 130408128 G A IGSF1 Silent p.I1273I 0.35 TCGA-EB-A6R0-01 X 134988616 134988616 C T SAGE1 Silent p.V214V 0.43 TCGA-EB-A6R0-01 X 135764942 135764942 G A ARHGEF6 Missense_Mutation p.P485L 0.34 tolerated(0.07) benign(0.378) TCGA-EB-A6R0-01 X 142596737 142596737 C T SPANXN3 Silent p.E111E 0.37 TCGA-EB-A6R0-01 X 148037687 148037687 G A AFF2 Silent p.V704V 0.04 TCGA-EB-A6R0-01 X 150840906 150840906 G A PASD1 Silent p.Q563Q 0.41 TCGA-EB-A6R0-01 X 152935939 152935939 G A PNCK Silent p.L418L 0.40 TCGA-EB-A6R0-01 X 153186550 153186550 C A ARHGAP4 Silent p.T166T 0.15 TCGA-EB-A6R0-01 X 153224882 153224882 G A HCFC1 Missense_Mutation p.T502I 0.42 deleterious(0) probably_damaging(0.993) TCGA-EB-A6R0-01 X 153689679 153689679 C T PLXNA3 Missense_Mutation p.P279S 0.27 deleterious(0.05) probably_damaging(1) TCGA-EB-A6R0-01 X 154493617 154493617 G A RAB39B 5'UTR 0.43 TCGA-EB-A6R0-01 X 20043088 20043088 C T MAP7D2 Missense_Mutation p.E465K 0.36 tolerated(0.07) unknown(0) TCGA-EB-A6R0-01 X 25025476 25025476 G A ARX Silent p.F400F 0.25 TCGA-EB-A6R0-01 X 31089490 31089490 G A FTHL17 3'UTR 0.35 TCGA-EB-A6R0-01 X 37029196 37029196 G A FAM47C Missense_Mutation p.E905K 0.36 tolerated(0.43) possibly_damaging(0.79) TCGA-EB-A6R0-01 X 48374125 48374125 C T PORCN Missense_Mutation p.R323C 0.41 deleterious(0.01) possibly_damaging(0.892) TCGA-EB-A6R0-01 X 49028420 49028420 G A PLP2 Missense_Mutation p.G25R 0.21 deleterious(0) probably_damaging(0.977) TCGA-EB-A6R0-01 X 49143506 49143506 C T PPP1R3F Missense_Mutation p.S785F 0.38 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-EB-A6R0-01 X 50213085 50213085 G A DGKK RNA 0.39 TCGA-EB-A6R0-01 X 50377196 50377196 G A SHROOM4 Missense_Mutation p.P626L 0.41 tolerated(0.34) benign(0.004) TCGA-EB-A6R0-01 X 51239395 51239395 G A NUDT11 5'UTR 0.33 TCGA-EB-A6R0-01 X 55650841 55650841 C T FOXR2 Missense_Mutation p.P233S 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-EB-A6R0-01 X 57458437 57458437 C T FAAH2 Silent p.I361I 0.29 TCGA-EB-A6R0-01 X 601614 601614 G A SHOX Splice_Site p.X182_splice 0.44 TCGA-EB-A6R0-01 X 69626816 69626816 A C KIF4A Missense_Mutation p.E1049A 0.33 deleterious(0.04) benign(0.018) TCGA-EB-A6R0-01 X 73068904 73068904 G A XIST RNA 0.07 TCGA-EB-A6R0-01 X 84525149 84525149 A G ZNF711 Missense_Mutation p.T369A 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-EB-A82B-01 10 123970727 123970727 G A TACC2 Missense_Mutation p.V2263I 0.29 possibly_damaging(0.885) TCGA-EB-A82B-01 10 75206316 75206316 C T PPP3CB Missense_Mutation p.R402Q 0.31 deleterious(0.02) probably_damaging(0.96) TCGA-EB-A82B-01 11 57382032 57382032 G A SERPING1 Missense_Mutation p.R494Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-EB-A82B-01 11 6415697 6415697 T C SMPD1 Missense_Mutation p.C586R 0.24 deleterious(0) probably_damaging(0.998) TCGA-EB-A82B-01 11 66330539 66330539 C T CTSF 3'Flank 0.06 TCGA-EB-A82B-01 11 74904488 74904488 G A SLCO2B1 Missense_Mutation p.R434Q 0.14 deleterious(0) probably_damaging(0.968) TCGA-EB-A82B-01 11 86152385 86152385 T C ME3 Missense_Mutation p.Y584C 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A82B-01 12 114836416 114836416 G A TBX5 Missense_Mutation p.L158F 0.20 deleterious(0.02) possibly_damaging(0.902) TCGA-EB-A82B-01 12 56364863 56364863 G T CDK2 Missense_Mutation p.E208D 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-EB-A82B-01 12 6131104 6131104 G A VWF Silent p.V1212V 0.33 TCGA-EB-A82B-01 12 6657267 6657267 C T IFFO1 Silent p.R473R 0.13 TCGA-EB-A82B-01 12 68595624 68595624 T C IL26 3'UTR 0.05 TCGA-EB-A82B-01 13 88328009 88328009 C T SLITRK5 Silent p.T122T 0.20 TCGA-EB-A82B-01 14 106321876 106321876 G A IGHM Missense_Mutation p.R120C 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-EB-A82B-01 14 20296092 20296092 T G OR4N2 Missense_Mutation p.L162R 0.08 deleterious(0) probably_damaging(0.912) TCGA-EB-A82B-01 14 20389697 20389697 T C OR4K5 Missense_Mutation p.I311T 0.04 tolerated(0.11) benign(0.001) TCGA-EB-A82B-01 14 23858083 23858083 T C MYH6 Missense_Mutation p.E1387G 0.31 deleterious(0) probably_damaging(0.938) TCGA-EB-A82B-01 15 75012940 75012940 G A CYP1A1 Missense_Mutation p.R477W 0.16 deleterious(0) possibly_damaging(0.846) TCGA-EB-A82B-01 16 20556548 20556548 G A ACSM2B Silent p.P404P 0.33 TCGA-EB-A82B-01 16 24919327 24919327 C A SLC5A11 Missense_Mutation p.P437T 0.31 deleterious(0) probably_damaging(0.996) TCGA-EB-A82B-01 17 29662034 29662034 G A NF1 Nonsense_Mutation p.W1997* 0.36 TCGA-EB-A82B-01 17 29665757 29665757 C G NF1 Nonsense_Mutation p.Y2285* 0.20 TCGA-EB-A82B-01 17 30800818 30800818 G A PSMD11 Splice_Site p.X215_splice 0.18 TCGA-EB-A82B-01 17 39041111 39041111 G A KRT20 Silent p.N109N 0.24 TCGA-EB-A82B-01 17 72277988 72277988 G A DNAI2 Missense_Mutation p.R11H 0.12 deleterious(0.01) possibly_damaging(0.823) TCGA-EB-A82B-01 18 21805159 21805159 G A OSBPL1A Missense_Mutation p.S483F 0.19 tolerated(0.17) probably_damaging(0.928) TCGA-EB-A82B-01 19 12461709 12461709 A G ZNF442 Silent p.T230T 0.30 TCGA-EB-A82B-01 19 19010490 19010490 A C COPE Nonstop_Mutation p.*309Gext*55 0.30 TCGA-EB-A82B-01 19 20727432 20727432 G A ZNF737 Missense_Mutation p.T526I 0.14 tolerated(0.19) benign(0.003) TCGA-EB-A82B-01 19 21106095 21106095 T C ZNF85 5'UTR 0.07 TCGA-EB-A82B-01 19 40023344 40023344 C T EID2B Silent p.R33R 0.14 TCGA-EB-A82B-01 19 55340833 55340833 C T KIR3DL1 Missense_Mutation p.H340Y 0.26 tolerated(0.19) possibly_damaging(0.806) TCGA-EB-A82B-01 19 56736350 56736350 C A ZSCAN5A Silent p.L22L 0.16 TCGA-EB-A82B-01 1 152279002 152279002 C T FLG Missense_Mutation p.R2787H 0.05 benign(0.046) TCGA-EB-A82B-01 1 152538682 152538682 C T LCE3E Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.36) unknown(0) TCGA-EB-A82B-01 1 158648306 158648306 G A SPTA1 Missense_Mutation p.P233S 0.13 tolerated(0.4) benign(0.034) TCGA-EB-A82B-01 1 182355410 182355410 G A GLUL Silent p.N152N 0.09 TCGA-EB-A82B-01 1 19209660 19209660 G A ALDH4A1 Silent p.F212F 0.09 TCGA-EB-A82B-01 1 202288091 202288091 G A LGR6 Missense_Mutation p.R887Q 0.14 tolerated(0.78) benign(0.001) TCGA-EB-A82B-01 1 205760782 205760782 G A SLC41A1 Missense_Mutation p.P474L 0.07 deleterious(0) probably_damaging(0.999) TCGA-EB-A82B-01 1 24447679 24447679 C T IL22RA1 Silent p.L447L 0.10 TCGA-EB-A82B-01 1 6191728 6191728 G A CHD5 Silent p.T1075T 0.13 TCGA-EB-A82B-01 20 60498530 60498530 A C CDH4 Silent p.R466R 0.12 TCGA-EB-A82B-01 21 34120883 34120884 TA - PAXBP1 Frame_Shift_Del p.Y617Hfs*24 0.11 TCGA-EB-A82B-01 22 19752582 19752582 C T TBX1 Silent p.T262T 0.14 TCGA-EB-A82B-01 22 29833742 29833742 G T RFPL1 5'Flank 0.14 TCGA-EB-A82B-01 22 36702469 36702469 G A MYH9 Silent p.H676H 0.15 TCGA-EB-A82B-01 2 166231267 166231267 C G SCN2A Missense_Mutation p.L1349V 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A82B-01 2 220150689 220150689 C T DNAJB2 3'UTR 0.24 TCGA-EB-A82B-01 2 40657128 40657128 C T SLC8A1 Missense_Mutation p.R98Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-EB-A82B-01 3 10975852 10975852 G A SLC6A11 Silent p.A525A 0.13 TCGA-EB-A82B-01 3 74411049 74411049 C T CNTN3 Silent p.E452E 0.25 TCGA-EB-A82B-01 4 164393079 164393079 C G TKTL2 Missense_Mutation p.S603T 0.20 tolerated(0.29) benign(0.014) TCGA-EB-A82B-01 4 3432135 3432136 - T RGS12 Frame_Shift_Ins p.E1192* 0.20 TCGA-EB-A82B-01 5 140255991 140255991 G A PCDHA12 Missense_Mutation p.E312K 0.13 tolerated_low_confidence(0.21) benign(0.127) TCGA-EB-A82B-01 5 149630302 149630304 GTT - CAMK2A In_Frame_Del p.N255del 0.18 TCGA-EB-A82B-01 5 176631152 176631152 C T NSD1 Silent p.Y365Y 0.12 TCGA-EB-A82B-01 5 41313863 41313863 A C PLCXD3 Silent p.P274P 0.27 TCGA-EB-A82B-01 5 86708690 86708690 C - CCNH 5'UTR 0.19 TCGA-EB-A82B-01 6 144858761 144858761 C T UTRN Silent p.L2093L 0.23 TCGA-EB-A82B-01 6 31903780 31903780 C T C2 Silent p.N310N 0.35 TCGA-EB-A82B-01 6 56505000 56505000 C G DST Missense_Mutation p.E274Q 0.08 possibly_damaging(0.89) TCGA-EB-A82B-01 6 62390898 62390898 T A KHDRBS2 Silent p.G340G 0.05 TCGA-EB-A82B-01 7 106830713 106830713 C A HBP1 Missense_Mutation p.P340T 0.53 deleterious(0.03) probably_damaging(0.952) TCGA-EB-A82B-01 7 142247223 142247223 C T TRBV7-3 Missense_Mutation p.G78E 0.14 TCGA-EB-A82B-01 8 2057239 2057239 C T MYOM2 Missense_Mutation p.R1033C 0.05 deleterious(0.02) probably_damaging(1) TCGA-EB-A82B-01 8 29197708 29197708 C T DUSP4 Silent p.K162K 0.53 TCGA-EB-A82B-01 9 127620288 127620288 C T RPL35 Missense_Mutation p.R94Q 0.29 tolerated(0.18) benign(0.001) TCGA-EB-A82B-01 9 894000 894001 - T DMRT1 Frame_Shift_Ins p.Y210Lfs*29 0.18 TCGA-EB-A82B-01 X 19983490 19983490 C A CXorf23 Missense_Mutation p.G316C 0.26 deleterious(0) probably_damaging(0.959) TCGA-EB-A82C-01 11 108098533 108098533 C T ATM Nonsense_Mutation p.R35* 0.67 TCGA-EB-A82C-01 11 18955787 18955787 G A MRGPRX1 Missense_Mutation p.A182V 0.30 tolerated(0.09) benign(0.047) TCGA-EB-A82C-01 11 5364465 5364465 G A OR51B5 Missense_Mutation p.S97F 0.30 tolerated(0.16) benign(0.002) TCGA-EB-A82C-01 11 58034514 58034514 T C OR10W1 Missense_Mutation p.T273A 0.53 deleterious(0) possibly_damaging(0.625) TCGA-EB-A82C-01 11 63681760 63681760 C T RCOR2 Silent p.E216E 0.47 TCGA-EB-A82C-01 11 66113671 66113671 A C B3GNT1 Missense_Mutation p.L366R 0.14 deleterious(0) probably_damaging(0.999) TCGA-EB-A82C-01 14 64518647 64518647 C T SYNE2 Silent p.L2672L 0.34 TCGA-EB-A82C-01 14 89168805 89168805 G A EML5 Silent p.Y741Y 0.18 TCGA-EB-A82C-01 15 22382989 22382989 C A OR4N4 Missense_Mutation p.Q173K 0.10 tolerated(0.84) benign(0.012) TCGA-EB-A82C-01 15 43340605 43340605 A T UBR1 Silent p.I508I 0.50 TCGA-EB-A82C-01 15 43340606 43340606 A C UBR1 Missense_Mutation p.I508S 0.50 deleterious(0) possibly_damaging(0.48) TCGA-EB-A82C-01 16 20788885 20788885 C T ACSM3 Silent p.N207N 0.54 TCGA-EB-A82C-01 16 2493730 2493730 A G CCNF Silent p.L286L 0.25 TCGA-EB-A82C-01 16 2493741 2493741 C G CCNF Missense_Mutation p.S290C 0.25 tolerated(0.09) possibly_damaging(0.518) TCGA-EB-A82C-01 16 67210641 67210641 C A KIAA0895L 3'UTR 0.32 TCGA-EB-A82C-01 17 29553477 29553478 - C NF1 Frame_Shift_Ins p.I679Dfs*21 0.52 TCGA-EB-A82C-01 17 38552584 38552584 G A TOP2A Missense_Mutation p.T1224I 0.83 deleterious(0.01) possibly_damaging(0.786) TCGA-EB-A82C-01 18 14106023 14106023 A G ZNF519 Silent p.H172H 0.15 TCGA-EB-A82C-01 18 47500940 47500940 C A MYO5B Nonsense_Mutation p.E368* 0.21 TCGA-EB-A82C-01 19 55144540 55144540 G A LILRB1 Silent p.L344L 0.09 TCGA-EB-A82C-01 19 55341925 55341925 G A KIR3DL1 3'UTR 0.24 TCGA-EB-A82C-01 19 55718180 55718180 G A PTPRH Nonsense_Mutation p.R77* 0.18 TCGA-EB-A82C-01 1 154456628 154456628 G A SHE Silent p.H495H 0.08 TCGA-EB-A82C-01 1 71478002 71478002 G A PTGER3 Nonsense_Mutation p.R355* 0.20 TCGA-EB-A82C-01 20 42825591 42825591 A T OSER1 3'UTR 0.27 TCGA-EB-A82C-01 20 60911800 60911800 G T LAMA5 Missense_Mutation p.A736D 0.38 benign(0.115) TCGA-EB-A82C-01 21 30961226 30961226 T C GRIK1 Missense_Mutation p.D501G 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A82C-01 21 34072313 34072313 G A SYNJ1 Missense_Mutation p.S144L 0.25 deleterious(0.01) possibly_damaging(0.783) TCGA-EB-A82C-01 2 167060877 167060877 C T SCN9A Missense_Mutation p.R1488Q 0.61 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A82C-01 2 212295732 212295732 C T ERBB4 Missense_Mutation p.D861N 0.32 deleterious(0) probably_damaging(0.956) TCGA-EB-A82C-01 2 226273634 226273634 A G NYAP2 Missense_Mutation p.E13G 0.62 tolerated(0.19) benign(0.06) TCGA-EB-A82C-01 2 238991896 238991896 G A SCLY Missense_Mutation p.G270D 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A82C-01 2 27455537 27455537 T G CAD Missense_Mutation p.V956G 0.77 deleterious(0) probably_damaging(1) TCGA-EB-A82C-01 4 164466832 164466832 C T MARCH1 Missense_Mutation p.V163I 0.32 tolerated(0.64) benign(0.002) TCGA-EB-A82C-01 5 90050853 90050853 G A GPR98 Missense_Mutation p.D3811N 0.34 probably_damaging(0.956) TCGA-EB-A82C-01 6 10730948 10730948 C T TMEM14C 3'UTR 0.32 TCGA-EB-A82C-01 6 137245251 137245251 C T SLC35D3 Missense_Mutation p.P223L 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A82C-01 6 30140172 30140172 G A TRIM15 3'UTR 0.16 TCGA-EB-A82C-01 6 36979615 36979615 G A FGD2 Missense_Mutation p.R171Q 0.48 tolerated(0.1) benign(0.042) TCGA-EB-A82C-01 7 148495743 148495743 G A CUL1 Missense_Mutation p.E704K 0.21 deleterious(0) probably_damaging(0.995) TCGA-EB-A82C-01 7 150490287 150490287 C A TMEM176B Silent p.V163V 0.26 TCGA-EB-A82C-01 7 65557766 65557766 C T ASL Missense_Mutation p.S421L 0.25 tolerated(0.22) benign(0.004) TCGA-EB-A82C-01 9 99582040 99582040 T A ZNF782 Missense_Mutation p.I89F 0.16 tolerated(0.29) benign(0.001) TCGA-EB-A82C-01 X 100879864 100879864 G A ARMCX3 5'UTR 0.39 TCGA-EB-A82C-01 X 107377615 107377615 A T ATG4A Silent p.G147G 0.39 TCGA-EB-A82C-01 X 13780562 13780562 A G OFD1 Silent p.E829E 0.44 TCGA-EB-A82C-01 X 150348253 150348253 C T GPR50 Silent p.F66F 0.36 TCGA-EB-A82C-01 X 63405946 63405946 G T AMER1 3'UTR 0.45 TCGA-EB-A82C-01 X 70349657 70349657 C A MED12 Silent p.A1273A 0.30 TCGA-EB-A85I-01 10 105799264 105799264 G A COL17A1 Silent p.F945F 0.26 TCGA-EB-A85I-01 10 15879309 15879309 G A FAM188A Missense_Mutation p.S157L 0.52 tolerated(0.22) benign(0.129) TCGA-EB-A85I-01 10 26446268 26446268 G T MYO3A Missense_Mutation p.M941I 0.17 deleterious(0) possibly_damaging(0.842) TCGA-EB-A85I-01 10 50531647 50531647 G A C10orf71 Missense_Mutation p.D353N 0.33 tolerated(0.06) probably_damaging(0.928) TCGA-EB-A85I-01 10 5496225 5496225 C T NET1 Intron 0.48 TCGA-EB-A85I-01 10 55582658 55582658 C T PCDH15 Missense_Mutation p.E1612K 0.28 tolerated_low_confidence(0.56) benign(0.005) TCGA-EB-A85I-01 10 56138626 56138626 C T PCDH15 Silent p.K78K 0.32 TCGA-EB-A85I-01 10 73466659 73466659 G A C10orf105 3'Flank 0.31 TCGA-EB-A85I-01 10 75479043 75479043 G A RP11-574K11.28 RNA 0.39 TCGA-EB-A85I-01 10 86259661 86259661 T C CCSER2 Missense_Mutation p.W786R 0.26 deleterious(0.05) benign(0.002) TCGA-EB-A85I-01 10 92508761 92508761 G A HTR7 Missense_Mutation p.S377F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EB-A85I-01 10 95126152 95126152 C T MYOF Missense_Mutation p.R917K 0.39 tolerated(1) benign(0.004) TCGA-EB-A85I-01 11 101761976 101761976 C T ANGPTL5 3'UTR 0.23 TCGA-EB-A85I-01 11 102575416 102575416 C T MMP27 Missense_Mutation p.E65K 0.27 tolerated(0.08) benign(0.028) TCGA-EB-A85I-01 11 10580680 10580680 C T LYVE1 Missense_Mutation p.R316Q 0.24 deleterious(0.03) possibly_damaging(0.487) TCGA-EB-A85I-01 11 124121064 124121064 C T OR8G1 Silent p.I214I 0.28 TCGA-EB-A85I-01 11 26582681 26582681 T C MUC15 Silent p.P339P 0.24 TCGA-EB-A85I-01 11 46341910 46341910 G A CREB3L1 Missense_Mutation p.E452K 0.19 deleterious(0.01) benign(0.146) TCGA-EB-A85I-01 11 46407283 46407283 G A CHRM4 Silent p.A275A 0.27 TCGA-EB-A85I-01 11 48239237 48239237 G A OR4B1 Silent p.V292V 0.28 TCGA-EB-A85I-01 11 4842843 4842843 C T OR51F2 Silent p.F76F 0.21 TCGA-EB-A85I-01 11 4945291 4945291 C T OR51G1 Silent p.E93E 0.15 TCGA-EB-A85I-01 11 5275536 5275536 G A HBG2 Missense_Mutation p.P101S 0.18 deleterious(0.03) possibly_damaging(0.614) TCGA-EB-A85I-01 11 55065635 55065635 G A TRIM51HP RNA 0.20 TCGA-EB-A85I-01 11 55587575 55587575 C T OR5D18 Missense_Mutation p.S157F 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-EB-A85I-01 11 56019965 56019965 C T OR5T3 Missense_Mutation p.S97L 0.29 deleterious(0) probably_damaging(0.988) TCGA-EB-A85I-01 11 56114089 56114089 C T OR8K1 Missense_Mutation p.S192F 0.19 deleterious_low_confidence(0.05) benign(0.199) TCGA-EB-A85I-01 11 56258826 56258826 C A OR5M8 Missense_Mutation p.L7F 0.20 tolerated(0.05) benign(0.125) TCGA-EB-A85I-01 11 62567729 62567729 G A NXF1 Intron 0.50 TCGA-EB-A85I-01 11 63149725 63149725 G A SLC22A9 Missense_Mutation p.R350K 0.21 deleterious(0.01) benign(0.314) TCGA-EB-A85I-01 11 65266181 65266181 G A MALAT1 RNA 0.26 TCGA-EB-A85I-01 11 71276699 71276699 G A KRTAP5-10 Silent p.G22G 0.30 TCGA-EB-A85I-01 11 77885184 77885184 G A KCTD21 Silent p.S139S 0.22 TCGA-EB-A85I-01 11 7961026 7961026 G A OR10A3 Silent p.L14L 0.19 TCGA-EB-A85I-01 11 7982729 7982729 C T NLRP10 Missense_Mutation p.E144K 0.10 deleterious(0.05) benign(0.061) TCGA-EB-A85I-01 11 85445325 85445325 G A SYTL2 Silent p.I348I 0.21 TCGA-EB-A85I-01 11 86518768 86518768 G T PRSS23 Missense_Mutation p.W28L 0.27 tolerated(0.72) benign(0.048) TCGA-EB-A85I-01 11 88027598 88027598 G A CTSC Missense_Mutation p.P323L 0.16 deleterious(0) probably_damaging(0.994) TCGA-EB-A85I-01 11 88027600 88027600 G A CTSC Silent p.F322F 0.16 TCGA-EB-A85I-01 11 92086003 92086003 G A FAT3 Missense_Mutation p.G242E 0.19 probably_damaging(1) TCGA-EB-A85I-01 12 10746493 10746493 G A KLRAP1 RNA 0.26 TCGA-EB-A85I-01 12 109678939 109678939 C T ACACB Silent p.L1625L 0.27 TCGA-EB-A85I-01 12 120622684 120622684 G A GCN1L1 Missense_Mutation p.P43L 0.27 probably_damaging(0.997) TCGA-EB-A85I-01 12 123467229 123467229 C T ARL6IP4 3'UTR 0.23 TCGA-EB-A85I-01 12 31267793 31267793 G A RP11-551L14.1 RNA 0.24 TCGA-EB-A85I-01 12 40020160 40020160 C T C12orf40 Missense_Mutation p.R8W 0.33 deleterious(0) probably_damaging(0.985) TCGA-EB-A85I-01 12 71972583 71972583 G A LGR5 Splice_Site p.X427_splice 0.28 TCGA-EB-A85I-01 12 80746127 80746127 G T OTOGL Missense_Mutation p.W1764L 0.24 tolerated(0.54) benign(0.016) TCGA-EB-A85I-01 12 8376640 8376640 C T FAM90A1 Missense_Mutation p.D99N 0.18 tolerated(0.44) benign(0.142) TCGA-EB-A85I-01 12 93100709 93100709 C A C12orf74 Missense_Mutation p.P101H 0.18 deleterious(0) probably_damaging(0.935) TCGA-EB-A85I-01 12 93100710 93100710 C A C12orf74 Silent p.P101P 0.18 TCGA-EB-A85I-01 12 95603582 95603582 C T FGD6 Missense_Mutation p.R493Q 0.22 deleterious(0) possibly_damaging(0.477) TCGA-EB-A85I-01 13 102030933 102030933 A G NALCN Silent p.S121S 0.09 TCGA-EB-A85I-01 13 58298952 58298952 G A PCDH17 Missense_Mutation p.G1002R 0.25 deleterious(0) probably_damaging(0.962) TCGA-EB-A85I-01 13 72147103 72147103 G A DACH1 Missense_Mutation p.P392S 0.21 possibly_damaging(0.885) TCGA-EB-A85I-01 13 84455258 84455258 G A SLITRK1 Silent p.L129L 0.26 TCGA-EB-A85I-01 13 86369476 86369476 C T SLITRK6 Missense_Mutation p.E390K 0.40 deleterious(0.05) probably_damaging(0.984) TCGA-EB-A85I-01 14 20528262 20528262 G A OR4L1 Missense_Mutation p.R20Q 0.23 deleterious(0.03) benign(0) TCGA-EB-A85I-01 14 20585856 20585856 C T OR4K17 Silent p.L97L 0.23 TCGA-EB-A85I-01 14 22459082 22459082 C T TRAV16 Silent p.F78F 0.14 TCGA-EB-A85I-01 14 24884942 24884942 C T NYNRIN Silent p.L1329L 0.24 TCGA-EB-A85I-01 14 31855777 31855777 G C HEATR5A Silent p.A105A 0.23 TCGA-EB-A85I-01 14 51192660 51192660 G A NIN Missense_Mutation p.P2068L 0.27 tolerated_low_confidence(0.08) probably_damaging(0.991) TCGA-EB-A85I-01 14 74376081 74376081 C T ZNF410 Silent p.G334G 0.36 TCGA-EB-A85I-01 14 77294696 77294696 T A C14orf166B Missense_Mutation p.S51T 0.53 tolerated(0.21) benign(0.001) TCGA-EB-A85I-01 14 77931933 77931933 C T AHSA1 Missense_Mutation p.P205S 0.38 tolerated(0.1) benign(0.217) TCGA-EB-A85I-01 14 95058431 95058431 G A SERPINA5 Missense_Mutation p.G359E 0.34 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 15 102197201 102197201 G A TARSL2 Silent p.D728D 0.11 TCGA-EB-A85I-01 15 23441121 23441121 C T AC100757.1 5'Flank 0.15 TCGA-EB-A85I-01 15 25514854 25514854 C T SNORD115-48 5'Flank 0.32 TCGA-EB-A85I-01 15 34158806 34158806 T G AVEN 3'UTR 0.28 TCGA-EB-A85I-01 15 42042616 42042616 C T MGA Nonsense_Mutation p.Q2271* 0.19 TCGA-EB-A85I-01 15 42716214 42716214 G A ZNF106 Silent p.V1722V 0.22 TCGA-EB-A85I-01 15 43318842 43318842 G A UBR1 Missense_Mutation p.H818Y 0.23 deleterious(0.03) possibly_damaging(0.737) TCGA-EB-A85I-01 15 59911871 59911871 G A GCNT3 3'UTR 0.23 TCGA-EB-A85I-01 15 64689831 64689831 G A TRIP4 Silent p.K144K 0.29 TCGA-EB-A85I-01 15 89755133 89755133 C T RLBP1 Splice_Site p.X176_splice 0.42 TCGA-EB-A85I-01 15 90171993 90171993 G A KIF7 Missense_Mutation p.S1230L 0.07 tolerated(0.39) benign(0) TCGA-EB-A85I-01 16 1816231 1816231 C T MAPK8IP3 Silent p.A879A 0.17 TCGA-EB-A85I-01 16 20043909 20043909 A C GPR139 Silent p.A70A 0.20 TCGA-EB-A85I-01 16 20803429 20803429 G A ACSM3 Missense_Mutation p.D478N 0.29 deleterious(0.01) possibly_damaging(0.524) TCGA-EB-A85I-01 16 27455940 27455940 C T IL21R Silent p.S195S 0.26 TCGA-EB-A85I-01 16 27974492 27974492 G A GSG1L Missense_Mutation p.P128S 0.18 deleterious(0) possibly_damaging(0.844) TCGA-EB-A85I-01 16 30018250 30018250 C T DOC2A Missense_Mutation p.G245E 0.12 tolerated(0.37) benign(0.004) TCGA-EB-A85I-01 16 5141824 5141824 A T FAM86A Missense_Mutation p.S105T 0.31 tolerated(0.3) benign(0.039) TCGA-EB-A85I-01 16 53403351 53403351 C T RP11-44F14.1 RNA 0.32 TCGA-EB-A85I-01 16 56545143 56545143 G A BBS2 Silent p.S133S 0.20 TCGA-EB-A85I-01 16 68264918 68264918 G A ESRP2 Missense_Mutation p.P575L 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-EB-A85I-01 16 70292118 70292118 G A AARS Silent p.A665A 0.25 TCGA-EB-A85I-01 16 84872032 84872032 C T CRISPLD2 5'UTR 0.13 TCGA-EB-A85I-01 17 11572920 11572920 C T DNAH9 Silent p.L1054L 0.28 TCGA-EB-A85I-01 17 34079577 34079577 G A GAS2L2 Missense_Mutation p.S98F 0.33 tolerated(0.35) benign(0.056) TCGA-EB-A85I-01 17 39786706 39786706 C T KRT42P RNA 0.29 TCGA-EB-A85I-01 17 39786707 39786707 C T KRT42P RNA 0.29 TCGA-EB-A85I-01 17 41244930 41244930 G A BRCA1 Missense_Mutation p.S873L 0.26 deleterious(0) probably_damaging(0.997) TCGA-EB-A85I-01 17 47656771 47656771 G A NXPH3 3'UTR 0.24 TCGA-EB-A85I-01 17 4841131 4841131 G A SLC25A11 Missense_Mutation p.P284S 0.21 deleterious(0) probably_damaging(0.982) TCGA-EB-A85I-01 17 61560891 61560891 C T ACE Missense_Mutation p.H520Y 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 17 6683600 6683600 G A FBXO39 Missense_Mutation p.R138H 0.24 tolerated(0.08) benign(0.15) TCGA-EB-A85I-01 17 72740446 72740446 G A RAB37 Splice_Site p.X128_splice 0.24 TCGA-EB-A85I-01 17 7907352 7907352 C T GUCY2D Missense_Mutation p.R302C 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 18 76754193 76754193 C T SALL3 Silent p.P734P 0.19 TCGA-EB-A85I-01 19 13035291 13035291 G T FARSA Silent p.P415P 0.32 TCGA-EB-A85I-01 19 15124546 15124546 G A CCDC105 Silent p.R211R 0.18 TCGA-EB-A85I-01 19 15918614 15918614 G A OR10H1 Silent p.I78I 0.31 TCGA-EB-A85I-01 19 2476339 2476339 G A GADD45B 5'UTR 0.20 TCGA-EB-A85I-01 19 2877650 2877650 G A ZNF556 Missense_Mutation p.E232K 0.20 tolerated(0.42) possibly_damaging(0.507) TCGA-EB-A85I-01 19 35758251 35758251 A G LSR Missense_Mutation p.S510G 0.57 tolerated(0.1) benign(0.019) TCGA-EB-A85I-01 19 3816756 3816756 G A ZFR2 Silent p.N673N 0.21 TCGA-EB-A85I-01 19 38189810 38189810 G A ZNF607 Missense_Mutation p.L408F 0.21 deleterious(0.05) probably_damaging(0.925) TCGA-EB-A85I-01 19 42492240 42492240 C T ATP1A3 Missense_Mutation p.A82T 0.18 tolerated(0.23) possibly_damaging(0.574) TCGA-EB-A85I-01 19 44223980 44223980 G A IRGC Missense_Mutation p.E424K 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.525) TCGA-EB-A85I-01 19 55177886 55177886 C T LILRB4 Silent p.F329F 0.39 TCGA-EB-A85I-01 19 57326599 57326599 C T PEG3 Missense_Mutation p.E1071K 0.39 tolerated(0.83) benign(0.006) TCGA-EB-A85I-01 19 5867302 5867302 C T FUT5 Nonsense_Mutation p.W145* 0.26 TCGA-EB-A85I-01 19 7913848 7913848 C T EVI5L Silent p.I123I 0.22 TCGA-EB-A85I-01 19 8953658 8953658 G A MBD3L1 Missense_Mutation p.G102S 0.29 tolerated(0.08) benign(0.354) TCGA-EB-A85I-01 19 8976759 8976759 C T MUC16 Missense_Mutation p.E14103K 0.24 probably_damaging(0.991) TCGA-EB-A85I-01 19 9005665 9005665 G A MUC16 Silent p.I13247I 0.32 TCGA-EB-A85I-01 19 9075243 9075243 G A MUC16 Missense_Mutation p.S4068L 0.30 unknown(0) TCGA-EB-A85I-01 19 9091516 9091516 C T MUC16 Missense_Mutation p.R100K 0.21 unknown(0) TCGA-EB-A85I-01 19 9236979 9236979 G A OR7G3 Silent p.F216F 0.22 TCGA-EB-A85I-01 19 9362720 9362720 C T OR7E24 Missense_Mutation p.P334L 0.27 deleterious_low_confidence(0) benign(0.145) TCGA-EB-A85I-01 1 112525301 112525301 G A KCND3 Silent p.A16A 0.34 TCGA-EB-A85I-01 1 115537665 115537665 G A SYCP1 3'UTR 0.26 TCGA-EB-A85I-01 1 115615626 115615626 C T TSPAN2 Silent p.L24L 0.44 TCGA-EB-A85I-01 1 15420700 15420700 C A KAZN Missense_Mutation p.T416K 0.25 tolerated(0.21) benign(0.067) TCGA-EB-A85I-01 1 155171798 155171798 C T THBS3 Missense_Mutation p.D376N 0.30 tolerated(0.24) benign(0.01) TCGA-EB-A85I-01 1 156874559 156874559 G A PEAR1 Missense_Mutation p.E41K 0.18 deleterious(0) probably_damaging(0.921) TCGA-EB-A85I-01 1 167404559 167404559 C T CD247 Intron 0.11 TCGA-EB-A85I-01 1 1685536 1685536 G A NADK Missense_Mutation p.S497L 0.34 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A85I-01 1 169776995 169776995 C T C1orf112 Silent p.S209S 0.28 TCGA-EB-A85I-01 1 171510699 171510699 C A PRRC2C Missense_Mutation p.S1363Y 0.25 unknown(0) TCGA-EB-A85I-01 1 176998824 176998824 C T ASTN1 Missense_Mutation p.D356N 0.23 deleterious_low_confidence(0) benign(0.385) TCGA-EB-A85I-01 1 180044215 180044215 C T CEP350 Silent p.L1876L 0.36 TCGA-EB-A85I-01 1 181549761 181549761 C T CACNA1E Missense_Mutation p.P267L 0.23 deleterious(0) possibly_damaging(0.908) TCGA-EB-A85I-01 1 183542320 183542320 C T NCF2 Silent p.T203T 0.28 TCGA-EB-A85I-01 1 196977766 196977766 C T CFHR5 Nonsense_Mutation p.R555* 0.16 TCGA-EB-A85I-01 1 198666028 198666028 T C PTPRC Silent p.F96F 0.25 TCGA-EB-A85I-01 1 201020188 201020188 G A CACNA1S Missense_Mutation p.P1346L 0.26 deleterious(0.02) possibly_damaging(0.908) TCGA-EB-A85I-01 1 201842075 201842076 - T IPO9 Frame_Shift_Ins p.K900* 0.17 TCGA-EB-A85I-01 1 202391803 202391803 C T PPP1R12B Missense_Mutation p.P160S 0.18 deleterious(0) probably_damaging(0.976) TCGA-EB-A85I-01 1 205901032 205901032 G A SLC26A9 Silent p.L170L 0.27 TCGA-EB-A85I-01 1 23191674 23191674 C T EPHB2 Silent p.F424F 0.17 TCGA-EB-A85I-01 1 233161007 233161007 C T PCNXL2 Nonsense_Mutation p.W1497* 0.31 TCGA-EB-A85I-01 1 235916430 235916430 A G LYST Silent p.C2458C 0.45 TCGA-EB-A85I-01 1 237167454 237167454 C T MT1HL1 3'UTR 0.25 TCGA-EB-A85I-01 1 238090465 238090465 C A RP11-193H5.1 RNA 0.26 TCGA-EB-A85I-01 1 241953994 241953994 C T WDR64 Missense_Mutation p.P988L 0.33 deleterious(0.01) possibly_damaging(0.615) TCGA-EB-A85I-01 1 247719725 247719725 C T GCSAML Nonsense_Mutation p.Q16* 0.19 TCGA-EB-A85I-01 1 248004239 248004239 G A OR11L1 Silent p.F320F 0.16 TCGA-EB-A85I-01 1 34011770 34011770 G A CSMD2 Silent p.I2845I 0.24 TCGA-EB-A85I-01 1 34174761 34174761 G A CSMD2 Silent p.I1128I 0.23 TCGA-EB-A85I-01 1 41215314 41215314 C T NFYC Nonsense_Mutation p.R83* 0.28 TCGA-EB-A85I-01 1 42620510 42620510 G A GUCA2B Missense_Mutation p.E84K 0.22 tolerated(0.07) possibly_damaging(0.593) TCGA-EB-A85I-01 1 47398409 47398409 G A CYP4A11 Intron 0.25 TCGA-EB-A85I-01 1 54417800 54417800 C T LRRC42 Missense_Mutation p.P43L 0.22 deleterious(0) possibly_damaging(0.717) TCGA-EB-A85I-01 1 57399055 57399055 G A C8B Missense_Mutation p.S502F 0.25 deleterious(0) possibly_damaging(0.851) TCGA-EB-A85I-01 20 36775138 36775138 G A TGM2 Silent p.F280F 0.30 TCGA-EB-A85I-01 20 3781709 3781709 C T CDC25B Missense_Mutation p.A225V 0.26 tolerated(0.14) benign(0.305) TCGA-EB-A85I-01 20 3846631 3846631 C T MAVS Missense_Mutation p.A487V 0.05 tolerated(0.18) benign(0.002) TCGA-EB-A85I-01 20 4848520 4848520 C T SLC23A2 Missense_Mutation p.G418R 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 20 49225065 49225065 C T FAM65C Missense_Mutation p.E269K 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 20 50406677 50406677 G A SALL4 Missense_Mutation p.T782I 0.31 deleterious(0.02) benign(0.005) TCGA-EB-A85I-01 20 50408293 50408293 G A SALL4 Silent p.A243A 0.18 TCGA-EB-A85I-01 20 51871819 51871819 G A TSHZ2 Missense_Mutation p.D608N 0.30 tolerated(0.2) benign(0.111) TCGA-EB-A85I-01 20 61982232 61982232 C T CHRNA4 Missense_Mutation p.M177I 0.25 deleterious(0.03) probably_damaging(0.992) TCGA-EB-A85I-01 20 9400475 9400475 C T PLCB4 Silent p.F679F 0.26 TCGA-EB-A85I-01 21 10933874 10933874 C T TPTE Silent p.A335A 0.09 TCGA-EB-A85I-01 21 30307472 30307472 A T LTN1 Missense_Mutation p.S1658T 0.25 tolerated(0.13) benign(0.026) TCGA-EB-A85I-01 21 30409706 30409706 C T USP16 Silent p.P186P 0.19 TCGA-EB-A85I-01 21 33684030 33684030 G A MRAP Missense_Mutation p.S81N 0.24 tolerated(0.23) benign(0.008) TCGA-EB-A85I-01 21 41163935 41163935 G A IGSF5 Silent p.K319K 0.17 TCGA-EB-A85I-01 21 45714330 45714330 C T AIRE Missense_Mutation p.P483S 0.27 tolerated(0.18) benign(0.025) TCGA-EB-A85I-01 2 103095386 103095386 C T SLC9A4 Silent p.F115F 0.32 TCGA-EB-A85I-01 2 103124573 103124573 C T SLC9A4 Missense_Mutation p.R412W 0.36 deleterious(0) probably_damaging(0.999) TCGA-EB-A85I-01 2 108998331 108998331 T C SULT1C4 Missense_Mutation p.S95P 0.30 tolerated(0.67) benign(0.001) TCGA-EB-A85I-01 2 112725806 112725806 C T MERTK Missense_Mutation p.P313S 0.22 deleterious(0.05) possibly_damaging(0.728) TCGA-EB-A85I-01 2 136624295 136624295 G A MCM6 Missense_Mutation p.R207C 0.15 deleterious(0) probably_damaging(0.997) TCGA-EB-A85I-01 2 138208522 138208522 C T THSD7B Nonsense_Mutation p.R1023* 0.31 TCGA-EB-A85I-01 2 138378201 138378201 G A THSD7B Missense_Mutation p.R1238K 0.28 tolerated(0.32) unknown(0) TCGA-EB-A85I-01 2 155098601 155098601 C T GALNT13 Missense_Mutation p.H124Y 0.23 deleterious(0) possibly_damaging(0.873) TCGA-EB-A85I-01 2 166930132 166930132 C T SCN1A 5'Flank 0.32 TCGA-EB-A85I-01 2 170031832 170031832 G A LRP2 Missense_Mutation p.L3547F 0.21 possibly_damaging(0.601) TCGA-EB-A85I-01 2 179587934 179587934 C G TTN Missense_Mutation p.G7267A 0.18 TCGA-EB-A85I-01 2 209358331 209358331 G A PTH2R Missense_Mutation p.E534K 0.19 tolerated(0.2) benign(0.001) TCGA-EB-A85I-01 2 219494299 219494299 G A PLCD4 Silent p.G344G 0.24 TCGA-EB-A85I-01 2 220161970 220161970 C T PTPRN Silent p.T691T 0.18 TCGA-EB-A85I-01 2 226447151 226447151 C T NYAP2 Missense_Mutation p.P340S 0.29 deleterious(0) probably_damaging(0.966) TCGA-EB-A85I-01 2 228886507 228886507 G A SPHKAP Missense_Mutation p.S206F 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 2 234869577 234869577 G A TRPM8 Missense_Mutation p.R507Q 0.21 tolerated(0.27) benign(0.107) TCGA-EB-A85I-01 2 242793265 242793265 G A PDCD1 Missense_Mutation p.P271L 0.27 tolerated(1) benign(0.007) TCGA-EB-A85I-01 2 27016188 27016188 C T CENPA 3'UTR 0.31 TCGA-EB-A85I-01 2 27505716 27505716 C T TRIM54 Silent p.I39I 0.25 TCGA-EB-A85I-01 2 29225418 29225418 G A FAM179A Silent p.G148G 0.17 TCGA-EB-A85I-01 2 37268287 37268287 G T HEATR5B Missense_Mutation p.P949T 0.23 deleterious(0.04) benign(0.055) TCGA-EB-A85I-01 2 47637421 47637421 C T MSH2 Silent p.S185S 0.30 TCGA-EB-A85I-01 2 60687472 60687472 G A BCL11A 3'UTR 0.38 TCGA-EB-A85I-01 2 68622940 68622940 G T PLEK Missense_Mutation p.G349W 0.20 deleterious(0) probably_damaging(0.994) TCGA-EB-A85I-01 2 70890494 70890494 G A ADD2 3'UTR 0.28 TCGA-EB-A85I-01 2 79253911 79253911 C T REG3G Missense_Mutation p.P50L 0.19 tolerated(0.08) benign(0) TCGA-EB-A85I-01 2 88424041 88424041 G A FABP1 Missense_Mutation p.T102I 0.23 tolerated(0.08) benign(0.131) TCGA-EB-A85I-01 2 95815961 95815961 G A ZNF514 Missense_Mutation p.S90F 0.26 tolerated(0.16) benign(0.036) TCGA-EB-A85I-01 3 126062588 126062588 G A KLF15 Silent p.S411S 0.18 TCGA-EB-A85I-01 3 126062589 126062589 G A KLF15 Missense_Mutation p.S411F 0.18 deleterious(0.01) benign(0.032) TCGA-EB-A85I-01 3 126153199 126153199 G A CCDC37 Missense_Mutation p.A535T 0.18 deleterious(0.05) benign(0.259) TCGA-EB-A85I-01 3 126268686 126268686 G A C3orf22 3'UTR 0.25 TCGA-EB-A85I-01 3 131261413 131261413 C T CPNE4 Silent p.R509R 0.25 TCGA-EB-A85I-01 3 13659728 13659728 C T FBLN2 Missense_Mutation p.H628Y 0.20 deleterious(0) benign(0.306) TCGA-EB-A85I-01 3 138738962 138738962 G A PRR23B Missense_Mutation p.S181F 0.13 tolerated(0.49) benign(0.037) TCGA-EB-A85I-01 3 160150278 160150278 C T SMC4 Missense_Mutation p.P1169S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EB-A85I-01 3 186507852 186507852 T C RFC4 Missense_Mutation p.E333G 0.17 tolerated(0.17) possibly_damaging(0.493) TCGA-EB-A85I-01 3 38350536 38350536 C T SLC22A14 Silent p.I289I 0.22 TCGA-EB-A85I-01 3 38651298 38651298 G A SCN5A Silent p.L287L 0.25 TCGA-EB-A85I-01 3 48732787 48732787 C T IP6K2 5'UTR 0.42 TCGA-EB-A85I-01 3 48956276 48956276 G T ARIH2OS Missense_Mutation p.P103T 0.44 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EB-A85I-01 3 49896722 49896722 C T CAMKV 3'UTR 0.25 TCGA-EB-A85I-01 4 100065431 100065431 C T ADH4 5'UTR 0.29 TCGA-EB-A85I-01 4 100203562 100203562 C T ADH1A Missense_Mutation p.E257K 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EB-A85I-01 4 110662246 110662246 C T CFI Missense_Mutation p.D519N 0.30 deleterious(0) probably_damaging(0.996) TCGA-EB-A85I-01 4 126370716 126370716 G A FAT4 Missense_Mutation p.D2849N 0.23 probably_damaging(1) TCGA-EB-A85I-01 4 13588091 13588091 G A BOD1L1 Missense_Mutation p.P2788S 0.30 benign(0.038) TCGA-EB-A85I-01 4 141543844 141543844 G A TBC1D9 Silent p.G1102G 0.07 TCGA-EB-A85I-01 4 151114356 151114356 C T DCLK2 Missense_Mutation p.R275C 0.16 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 4 151160891 151160891 C T DCLK2 Intron 0.17 TCGA-EB-A85I-01 4 175897635 175897635 A G ADAM29 Missense_Mutation p.N320S 0.22 tolerated(0.08) benign(0.03) TCGA-EB-A85I-01 4 6611711 6611711 A T MAN2B2 Silent p.S731S 0.21 TCGA-EB-A85I-01 4 74282062 74282062 C T ALB Silent p.F427F 0.10 TCGA-EB-A85I-01 4 88085204 88085204 C A KLHL8 Missense_Mutation p.S522I 0.26 deleterious(0.01) possibly_damaging(0.898) TCGA-EB-A85I-01 5 123977003 123977003 G A ZNF608 Silent p.H1464H 0.25 TCGA-EB-A85I-01 5 13727743 13727743 C T DNAH5 Nonsense_Mutation p.W3969* 0.24 TCGA-EB-A85I-01 5 13817703 13817703 A G DNAH5 Silent p.D2314D 0.25 TCGA-EB-A85I-01 5 140214062 140214062 C T PCDHA7 Missense_Mutation p.H32Y 0.30 deleterious_low_confidence(0) benign(0.24) TCGA-EB-A85I-01 5 140572393 140572393 C T PCDHB10 Silent p.L90L 0.37 TCGA-EB-A85I-01 5 162945257 162945257 C T MAT2B Missense_Mutation p.S298F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EB-A85I-01 5 170346472 170346472 C T RANBP17 Missense_Mutation p.H377Y 0.23 tolerated(0.34) benign(0.293) TCGA-EB-A85I-01 5 176314210 176314210 C A HK3 Missense_Mutation p.G577W 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 5 23522423 23522423 G A PRDM9 Silent p.K173K 0.18 TCGA-EB-A85I-01 5 36985776 36985776 C T NIPBL Nonsense_Mutation p.R832* 0.15 TCGA-EB-A85I-01 5 37121782 37121782 G A C5orf42 Missense_Mutation p.P2987L 0.21 deleterious(0.02) benign(0.046) TCGA-EB-A85I-01 5 40999837 40999837 G A MROH2B Silent p.S1509S 0.18 TCGA-EB-A85I-01 5 49699256 49699256 C T EMB Silent p.V211V 0.27 TCGA-EB-A85I-01 5 82834010 82834010 G A VCAN Missense_Mutation p.G1730R 0.22 tolerated(0.77) benign(0.037) TCGA-EB-A85I-01 6 109993185 109993185 G A AK9 Missense_Mutation p.P90S 0.21 tolerated(0.26) possibly_damaging(0.749) TCGA-EB-A85I-01 6 128151036 128151036 C T THEMIS Missense_Mutation p.M98I 0.21 tolerated(0.86) benign(0.004) TCGA-EB-A85I-01 6 130407386 130407386 C T L3MBTL3 Silent p.H503H 0.22 TCGA-EB-A85I-01 6 157496138 157496138 C T ARID1B Intron 0.22 TCGA-EB-A85I-01 6 31640007 31640007 C T CSNK2B-LY6G5B-1181 3'UTR 0.15 TCGA-EB-A85I-01 6 31939316 31939316 G A DXO Missense_Mutation p.P46L 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 6 32943170 32943170 A T BRD2 Nonsense_Mutation p.K115* 0.24 TCGA-EB-A85I-01 6 42584997 42584997 G A UBR2 Missense_Mutation p.R401K 0.32 tolerated(1) benign(0) TCGA-EB-A85I-01 6 54219339 54219339 C T TINAG Silent p.F385F 0.29 TCGA-EB-A85I-01 6 56006598 56006598 C T COL21A1 Silent p.G509G 0.14 TCGA-EB-A85I-01 6 85446331 85446331 C T TBX18 3'UTR 0.35 TCGA-EB-A85I-01 6 96651266 96651266 C T FUT9 Missense_Mutation p.L79F 0.23 tolerated(0.18) benign(0.174) TCGA-EB-A85I-01 7 102738898 102738898 C T ARMC10 Silent p.F310F 0.12 TCGA-EB-A85I-01 7 108155249 108155250 AT G PNPLA8 Frame_Shift_Del p.H229Pfs*13 0.25 TCGA-EB-A85I-01 7 137092670 137092670 G A DGKI Silent p.Y965Y 0.10 TCGA-EB-A85I-01 7 138738728 138738728 G T ZC3HAV1 Silent p.L767L 0.18 TCGA-EB-A85I-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EB-A85I-01 7 141734517 141734517 G A MGAM Missense_Mutation p.R612H 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A85I-01 7 141734636 141734636 C T MGAM Missense_Mutation p.P652S 0.12 deleterious(0.04) benign(0.177) TCGA-EB-A85I-01 7 14216364 14216364 T C DGKB Intron 0.32 TCGA-EB-A85I-01 7 142637774 142637774 C T C7orf34 3'UTR 0.50 TCGA-EB-A85I-01 7 143632581 143632581 C T OR2F2 Missense_Mutation p.L86F 0.39 tolerated(0.05) possibly_damaging(0.728) TCGA-EB-A85I-01 7 143657228 143657228 C T OR2F1 Silent p.L55L 0.22 TCGA-EB-A85I-01 7 149559185 149559185 C T ZNF862 Missense_Mutation p.S979F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A85I-01 7 4249712 4249712 C T SDK1 Silent p.N1819N 0.23 TCGA-EB-A85I-01 7 43547680 43547680 G A HECW1 Silent p.R1272R 0.25 TCGA-EB-A85I-01 7 88962845 88962845 C T ZNF804B Silent p.S183S 0.16 TCGA-EB-A85I-01 7 92730882 92730882 G A SAMD9 Missense_Mutation p.S1510F 0.51 tolerated(0.13) benign(0.004) TCGA-EB-A85I-01 7 93067543 93067543 C A CALCR Missense_Mutation p.R315M 0.10 deleterious(0) probably_damaging(0.999) TCGA-EB-A85I-01 7 98498286 98498286 C T TRRAP Silent p.F280F 0.31 TCGA-EB-A85I-01 8 10469420 10469420 G T RP1L1 Missense_Mutation p.Q730K 0.09 benign(0.259) TCGA-EB-A85I-01 8 106811112 106811112 C T ZFPM2 Silent p.F300F 0.18 TCGA-EB-A85I-01 8 108973045 108973045 C T RSPO2 Missense_Mutation p.R95K 0.21 tolerated(1) benign(0.05) TCGA-EB-A85I-01 8 109254052 109254052 G A EIF3E Missense_Mutation p.L61F 0.22 deleterious(0) probably_damaging(0.996) TCGA-EB-A85I-01 8 110477426 110477426 C T PKHD1L1 Missense_Mutation p.R2789C 0.20 deleterious(0) probably_damaging(0.989) TCGA-EB-A85I-01 8 140743451 140743451 C A TRAPPC9 Silent p.S1198S 0.48 TCGA-EB-A85I-01 8 144942984 144942984 C T EPPK1 Missense_Mutation p.A1480T 0.19 benign(0.003) TCGA-EB-A85I-01 8 17447031 17447031 G A PDGFRL Missense_Mutation p.R37K 0.26 tolerated(0.64) benign(0.003) TCGA-EB-A85I-01 8 23225866 23225866 C T LOXL2 5'UTR 0.23 TCGA-EB-A85I-01 8 41550342 41550342 G A ANK1 Silent p.L1269L 0.20 TCGA-EB-A85I-01 8 42038061 42038062 - C PLAT Frame_Shift_Ins p.I345Hfs*44 0.09 TCGA-EB-A85I-01 8 48840393 48840393 G A PRKDC Missense_Mutation p.L733F 0.23 possibly_damaging(0.481) TCGA-EB-A85I-01 8 52744066 52744066 G A PCMTD1 Missense_Mutation p.S215L 0.22 deleterious(0) possibly_damaging(0.898) TCGA-EB-A85I-01 8 65494196 65494196 C T BHLHE22 Silent p.I283I 0.19 TCGA-EB-A85I-01 8 80992646 80992646 G A TPD52 Missense_Mutation p.P15S 0.35 tolerated(0.06) probably_damaging(0.989) TCGA-EB-A85I-01 8 82606620 82606620 A T SLC10A5 Silent p.S196S 0.20 TCGA-EB-A85I-01 8 87683190 87683190 C T CNGB3 Missense_Mutation p.E159K 0.21 tolerated(0.09) probably_damaging(0.93) TCGA-EB-A85I-01 8 97318745 97318745 G A PTDSS1 Missense_Mutation p.R323K 0.22 deleterious(0) probably_damaging(0.975) TCGA-EB-A85I-01 9 116997913 116997913 C T COL27A1 Missense_Mutation p.P867L 0.26 unknown(0) TCGA-EB-A85I-01 9 135944087 135944087 C T CEL Silent p.V311V 0.17 TCGA-EB-A85I-01 9 138377655 138377655 C T PPP1R26 Silent p.T433T 0.24 TCGA-EB-A85I-01 9 140361908 140361908 C T PNPLA7 Missense_Mutation p.G967D 0.21 deleterious(0) probably_damaging(0.995) TCGA-EB-A85I-01 9 18829902 18829902 G A ADAMTSL1 Silent p.P1392P 0.33 TCGA-EB-A85I-01 9 27950186 27950186 C G LINGO2 Missense_Mutation p.D162H 0.25 deleterious(0) probably_damaging(0.999) TCGA-EB-A85I-01 9 27950487 27950487 G A LINGO2 Silent p.I61I 0.47 TCGA-EB-A85I-01 9 79875113 79875113 A G VPS13A Silent p.E800E 0.39 TCGA-EB-A85I-01 9 90585732 90585732 G A CDK20 Silent p.S153S 0.33 TCGA-EB-A85I-01 X 137749921 137749921 G A FGF13 Intron 0.67 TCGA-EB-A85I-01 X 142795495 142795495 C T SPANXN2 Silent p.T61T 0.54 TCGA-EB-A85I-01 X 152226240 152226240 A G PNMA3 Silent p.Q276Q 0.47 TCGA-EB-A85I-01 X 3238530 3238530 G A MXRA5 Silent p.F1732F 0.52 TCGA-EB-A85I-01 X 3238532 3238532 A C MXRA5 Missense_Mutation p.F1732V 0.53 deleterious(0.01) possibly_damaging(0.521) TCGA-EB-A85I-01 X 34962060 34962060 C T FAM47B Missense_Mutation p.T371I 0.35 tolerated(0.1) benign(0.022) TCGA-EB-A85I-01 X 34962671 34962671 G A FAM47B Missense_Mutation p.E575K 0.53 tolerated(0.53) benign(0.011) TCGA-EB-A85I-01 X 36162877 36162877 C T CHDC2 Missense_Mutation p.S487F 0.58 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EB-A85I-01 X 38212025 38212025 C T OTC Missense_Mutation p.R26W 0.44 tolerated(0.21) benign(0) TCGA-EB-A85J-01 10 102255232 102255232 G A SEC31B Silent p.P794P 0.18 TCGA-EB-A85J-01 10 115374612 115374612 C T NRAP Missense_Mutation p.E1058K 0.17 deleterious(0.05) benign(0.347) TCGA-EB-A85J-01 10 120354644 120354644 G A PRLHR Missense_Mutation p.S38L 0.19 tolerated(0.17) benign(0) TCGA-EB-A85J-01 10 123845831 123845831 G A TACC2 Silent p.G1272G 0.23 TCGA-EB-A85J-01 10 134591179 134591179 C T INPP5A Missense_Mutation p.P328S 0.16 deleterious(0) probably_damaging(0.96) TCGA-EB-A85J-01 10 22045673 22045673 G A DNAJC1 Silent p.I536I 0.28 TCGA-EB-A85J-01 10 31750116 31750116 G A ZEB1 Missense_Mutation p.G70E 0.21 tolerated(1) benign(0.001) TCGA-EB-A85J-01 10 37508529 37508529 G A ANKRD30A Missense_Mutation p.E1241K 0.30 tolerated(0.64) benign(0.001) TCGA-EB-A85J-01 10 46250449 46250449 C A FAM21C Missense_Mutation p.P436T 0.19 tolerated(0.13) benign(0.133) TCGA-EB-A85J-01 10 50256559 50256559 C T VSTM4 Missense_Mutation p.E247K 0.22 tolerated(0.33) benign(0.025) TCGA-EB-A85J-01 10 50272765 50272765 C T VSTM4 Silent p.V217V 0.21 TCGA-EB-A85J-01 10 50943353 50943353 C T OGDHL Missense_Mutation p.R985K 0.25 tolerated(1) benign(0) TCGA-EB-A85J-01 10 52566385 52566385 G A A1CF 3'UTR 0.47 TCGA-EB-A85J-01 10 55755361 55755361 G A PCDH15 Intron 0.19 TCGA-EB-A85J-01 10 61815736 61815736 C T ANK3 Missense_Mutation p.E4249K 0.26 probably_damaging(0.952) TCGA-EB-A85J-01 10 82348428 82348428 C T SH2D4B Missense_Mutation p.R180C 0.07 deleterious(0.02) benign(0.221) TCGA-EB-A85J-01 10 85993977 85993977 C T LRIT1 Silent p.R249R 0.27 TCGA-EB-A85J-01 10 96466699 96466699 C T CYP2C18 Silent p.F267F 0.20 TCGA-EB-A85J-01 10 96748852 96748852 C T CYP2C9 3'UTR 0.34 TCGA-EB-A85J-01 10 96998422 96998422 C T PDLIM1 Missense_Mutation p.G236R 0.31 tolerated(0.13) probably_damaging(0.972) TCGA-EB-A85J-01 10 97099063 97099063 G A SORBS1 Missense_Mutation p.R898W 0.33 deleterious(0) probably_damaging(0.998) TCGA-EB-A85J-01 10 98109492 98109492 C T OPALIN Missense_Mutation p.R55Q 0.05 tolerated_low_confidence(0.11) possibly_damaging(0.776) TCGA-EB-A85J-01 10 98743944 98743944 C T C10orf12 Missense_Mutation p.P933S 0.25 tolerated(0.18) probably_damaging(0.986) TCGA-EB-A85J-01 10 99343475 99343475 C T ANKRD2 Missense_Mutation p.A359V 0.22 tolerated_low_confidence(0.12) benign(0.006) TCGA-EB-A85J-01 10 99343476 99343476 C T ANKRD2 Silent p.A359A 0.26 TCGA-EB-A85J-01 10 99527511 99527511 C T SFRP5 Silent p.K238K 0.13 TCGA-EB-A85J-01 11 101834167 101834167 T C KIAA1377 Missense_Mutation p.C801R 0.06 deleterious(0.02) benign(0) TCGA-EB-A85J-01 11 10783595 10783595 C T CTR9 Silent p.F281F 0.16 TCGA-EB-A85J-01 11 117391973 117391973 G A DSCAML1 Missense_Mutation p.S422F 0.29 tolerated(0.35) benign(0.316) TCGA-EB-A85J-01 11 121367655 121367655 G A SORL1 Missense_Mutation p.R279Q 0.27 tolerated(0.45) possibly_damaging(0.525) TCGA-EB-A85J-01 11 123810547 123810547 C T OR4D5 Missense_Mutation p.S75F 0.08 deleterious(0.04) possibly_damaging(0.48) TCGA-EB-A85J-01 11 124412648 124412648 C T OR8B12 Silent p.R301R 0.23 TCGA-EB-A85J-01 11 19077647 19077647 G A MRGPRX2 Silent p.F101F 0.09 TCGA-EB-A85J-01 11 403755 403755 G A PKP3 Silent p.R687R 0.09 TCGA-EB-A85J-01 11 43515454 43515454 G A TTC17 Silent p.%3D 0.06 TCGA-EB-A85J-01 11 4674239 4674239 C G OR51E1 Silent p.P161P 0.22 TCGA-EB-A85J-01 11 48346871 48346871 T C OR4C3 Missense_Mutation p.F127L 0.12 deleterious(0) probably_damaging(0.997) TCGA-EB-A85J-01 11 48510378 48510378 C T OR4A47 Missense_Mutation p.L12F 0.18 tolerated_low_confidence(0.05) benign(0.077) TCGA-EB-A85J-01 11 49194919 49194919 C T FOLH1 Silent p.L405L 0.05 TCGA-EB-A85J-01 11 55563927 55563927 T G OR5D14 Missense_Mutation p.V299G 0.05 deleterious(0) probably_damaging(0.98) TCGA-EB-A85J-01 11 5602226 5602226 G A OR52B6 Silent p.L40L 0.08 TCGA-EB-A85J-01 11 56113563 56113563 G A OR8K1 Missense_Mutation p.E17K 0.27 deleterious_low_confidence(0) benign(0.41) TCGA-EB-A85J-01 11 56344538 56344538 G A OR5M10 Silent p.F220F 0.33 TCGA-EB-A85J-01 11 58189905 58189905 G A OR5B2 Missense_Mutation p.A277V 0.31 deleterious_low_confidence(0.01) benign(0.038) TCGA-EB-A85J-01 11 58601914 58601914 C T GLYATL2 Silent p.K291K 0.34 TCGA-EB-A85J-01 11 59814625 59814625 A T OOSP2 3'UTR 0.14 TCGA-EB-A85J-01 11 60075743 60075743 C T MS4A4A 3'UTR 0.30 TCGA-EB-A85J-01 11 64820980 64820980 C G NAALADL1 Missense_Mutation p.R354P 0.31 deleterious(0.01) benign(0.001) TCGA-EB-A85J-01 11 70281209 70281209 G A CTTN Missense_Mutation p.G495R 0.10 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 11 7960227 7960227 G A OR10A3 Missense_Mutation p.L281F 0.23 tolerated(0.12) possibly_damaging(0.521) TCGA-EB-A85J-01 11 7981482 7981482 C T NLRP10 Silent p.R559R 0.38 TCGA-EB-A85J-01 12 101551128 101551128 C T SLC5A8 Missense_Mutation p.D588N 0.21 tolerated(0.13) benign(0.064) TCGA-EB-A85J-01 12 108931935 108931935 G A SART3 Silent p.N369N 0.19 TCGA-EB-A85J-01 12 109881406 109881406 G A MYO1H Missense_Mutation p.V910M 0.28 deleterious(0) probably_damaging(0.971) TCGA-EB-A85J-01 12 110813939 110813939 G A ANAPC7 Silent p.I514I 0.25 TCGA-EB-A85J-01 12 119961582 119961582 G A CCDC60 Silent p.E396E 0.30 TCGA-EB-A85J-01 12 124358213 124358213 G A DNAH10 Missense_Mutation p.G2514R 0.24 probably_damaging(0.994) TCGA-EB-A85J-01 12 130921784 130921784 C T RIMBP2 Missense_Mutation p.R553Q 0.25 tolerated(0.89) benign(0.08) TCGA-EB-A85J-01 12 133245308 133245308 C T POLE Missense_Mutation p.D647N 0.17 tolerated(0.27) benign(0.032) TCGA-EB-A85J-01 12 13716110 13716110 G A GRIN2B Silent p.S1354S 0.39 TCGA-EB-A85J-01 12 14976308 14976308 C T C12orf60 Missense_Mutation p.P147S 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 12 1740601 1740601 G A WNT5B Splice_Site p.X27_splice 0.31 TCGA-EB-A85J-01 12 21995304 21995304 G A ABCC9 Silent p.L1139L 0.19 TCGA-EB-A85J-01 12 29709839 29709839 G A TMTC1 Missense_Mutation p.L543F 0.18 tolerated(0.08) benign(0.16) TCGA-EB-A85J-01 12 42853776 42853776 A T PRICKLE1 Nonsense_Mutation p.Y777* 0.30 TCGA-EB-A85J-01 12 56030711 56030711 C T OR10P1 Silent p.F12F 0.27 TCGA-EB-A85J-01 12 57860091 57860091 G A GLI1 Silent p.R277R 0.15 TCGA-EB-A85J-01 12 62938739 62938739 T A MON2 Missense_Mutation p.I843N 0.25 deleterious(0) probably_damaging(0.964) TCGA-EB-A85J-01 12 71551497 71551497 A C TSPAN8 5'UTR 0.08 TCGA-EB-A85J-01 12 78583811 78583811 C T NAV3 Missense_Mutation p.P2013S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 12 8374397 8374397 G A FAM90A1 3'UTR 0.21 TCGA-EB-A85J-01 12 8376722 8376722 C T FAM90A1 Silent p.P71P 0.20 TCGA-EB-A85J-01 12 93150150 93150150 G A PLEKHG7 Missense_Mutation p.G228E 0.07 tolerated(0.07) possibly_damaging(0.634) TCGA-EB-A85J-01 12 96181168 96181168 C T NTN4 Missense_Mutation p.R45Q 0.22 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 12 978050 978050 C T WNK1 Intron 0.04 TCGA-EB-A85J-01 13 29600554 29600554 C T MTUS2 Silent p.P583P 0.27 TCGA-EB-A85J-01 13 31540489 31540489 C T TEX26 Silent p.F200F 0.19 TCGA-EB-A85J-01 13 45582944 45582944 C T GPALPP1 Missense_Mutation p.P113L 0.38 deleterious(0) probably_damaging(0.992) TCGA-EB-A85J-01 13 58209238 58209238 T A PCDH17 Missense_Mutation p.I853K 0.22 tolerated(0.16) possibly_damaging(0.63) TCGA-EB-A85J-01 13 67802118 67802118 G A PCDH9 Missense_Mutation p.P152L 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 13 73650063 73650063 C T KLF5 3'UTR 0.21 TCGA-EB-A85J-01 13 95279513 95279513 G C GPR180 3'UTR 0.43 TCGA-EB-A85J-01 13 97485053 97485053 G A HS6ST3 Silent p.Q339Q 0.08 TCGA-EB-A85J-01 13 99489850 99489850 C G DOCK9 Silent p.S1381S 0.32 TCGA-EB-A85J-01 14 101348311 101348311 C T RTL1 Missense_Mutation p.E939K 0.30 deleterious(0) probably_damaging(0.996) TCGA-EB-A85J-01 14 104129168 104129168 C T KLC1 Missense_Mutation p.P234L 0.12 deleterious(0) probably_damaging(0.944) TCGA-EB-A85J-01 14 106208335 106208335 G A IGHG1 Missense_Mutation p.L189F 0.33 deleterious(0.03) possibly_damaging(0.523) TCGA-EB-A85J-01 14 107083706 107083706 G A IGHV4-59 5'UTR 0.40 TCGA-EB-A85J-01 14 20295949 20295949 C T OR4N2 Silent p.L114L 0.18 TCGA-EB-A85J-01 14 20344490 20344490 G A OR4K2 Missense_Mutation p.E22K 0.11 tolerated(0.08) benign(0.011) TCGA-EB-A85J-01 14 20344588 20344588 C T OR4K2 Silent p.H54H 0.12 TCGA-EB-A85J-01 14 20389635 20389635 G A OR4K5 Silent p.R290R 0.12 TCGA-EB-A85J-01 14 22133479 22133479 C T OR4E2 Silent p.F61F 0.24 TCGA-EB-A85J-01 14 22409720 22409720 G A TRAV9-2 Silent p.T70T 0.23 TCGA-EB-A85J-01 14 23564461 23564461 C T ACIN1 Missense_Mutation p.G12E 0.36 benign(0.019) TCGA-EB-A85J-01 14 26917075 26917075 G A NOVA1 3'UTR 0.22 TCGA-EB-A85J-01 14 33292880 33292880 C T AKAP6 Missense_Mutation p.S1954F 0.25 deleterious(0.02) benign(0.082) TCGA-EB-A85J-01 14 58917344 58917344 C T KIAA0586 Missense_Mutation p.P390S 0.37 tolerated(0.05) possibly_damaging(0.453) TCGA-EB-A85J-01 14 60581562 60581562 C T PCNXL4 Silent p.F44F 0.28 TCGA-EB-A85J-01 14 65241875 65241875 C T SPTB Missense_Mutation p.E1604K 0.25 deleterious(0) possibly_damaging(0.771) TCGA-EB-A85J-01 14 81744771 81744771 G A STON2 Missense_Mutation p.S295F 0.23 tolerated_low_confidence(0.07) benign(0.024) TCGA-EB-A85J-01 14 93408208 93408208 G A ITPK1 Missense_Mutation p.H315Y 0.23 tolerated(0.21) possibly_damaging(0.626) TCGA-EB-A85J-01 14 94912882 94912882 C T SERPINA11 Missense_Mutation p.D235N 0.20 tolerated(0.13) benign(0.062) TCGA-EB-A85J-01 15 102346469 102346469 C T OR4F6 Nonsense_Mutation p.R183* 0.25 TCGA-EB-A85J-01 15 22369026 22369026 G A OR4M2 Missense_Mutation p.G151R 0.08 deleterious(0) probably_damaging(0.98) TCGA-EB-A85J-01 15 22369027 22369027 G A OR4M2 Missense_Mutation p.G151E 0.08 deleterious(0) probably_damaging(0.96) TCGA-EB-A85J-01 15 25332697 25332697 G A SNORD116-23 5'Flank 0.36 TCGA-EB-A85J-01 15 25432742 25432742 C T SNORD115-10 RNA 0.23 TCGA-EB-A85J-01 15 25616906 25616906 C T UBE3A Missense_Mutation p.E142K 0.32 tolerated(0.49) benign(0.005) TCGA-EB-A85J-01 15 30025405 30025405 G A TJP1 Silent p.F543F 0.04 TCGA-EB-A85J-01 15 31776558 31776558 C T OTUD7A Missense_Mutation p.E574K 0.33 deleterious(0.01) benign(0.416) TCGA-EB-A85J-01 15 31822944 31822944 C T OTUD7A Silent p.G206G 0.21 TCGA-EB-A85J-01 15 51773578 51773578 G A DMXL2 Missense_Mutation p.P1909S 0.19 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 15 59500904 59500904 G A MYO1E Silent p.F502F 0.20 TCGA-EB-A85J-01 15 72190117 72190117 G A MYO9A Missense_Mutation p.S1576F 0.20 deleterious_low_confidence(0) benign(0.035) TCGA-EB-A85J-01 15 78909471 78909471 C T CHRNA3 Nonsense_Mutation p.W91* 0.26 TCGA-EB-A85J-01 15 79080706 79080706 G A ADAMTS7 Nonsense_Mutation p.Q397* 0.19 TCGA-EB-A85J-01 15 79356790 79356790 C T RASGRF1 Missense_Mutation p.E119K 0.06 tolerated(0.08) possibly_damaging(0.856) TCGA-EB-A85J-01 15 90785114 90785114 G A GDPGP1 Missense_Mutation p.G325D 0.17 tolerated(0.52) benign(0.39) TCGA-EB-A85J-01 16 10788188 10788188 A C TEKT5 Missense_Mutation p.N181K 0.32 tolerated(0.84) benign(0.004) TCGA-EB-A85J-01 16 20451716 20451716 G A ACSM5 Silent p.R569R 0.10 TCGA-EB-A85J-01 16 3100466 3100466 C T MMP25 Missense_Mutation p.H194Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-EB-A85J-01 16 3860648 3860648 G A CREBBP Missense_Mutation p.P311S 0.29 benign(0.171) TCGA-EB-A85J-01 16 56902212 56902212 C T SLC12A3 Missense_Mutation p.R145C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 16 70906062 70906062 G A HYDIN Nonsense_Mutation p.Q3657* 0.30 TCGA-EB-A85J-01 16 72166731 72166731 C T PMFBP1 Missense_Mutation p.E455K 0.38 tolerated(0.15) benign(0.034) TCGA-EB-A85J-01 16 78064472 78064472 G A CLEC3A Missense_Mutation p.E119K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 16 85952329 85952329 C T IRF8 Missense_Mutation p.A303V 0.39 tolerated(0.34) benign(0.403) TCGA-EB-A85J-01 16 87365000 87365000 G A FBXO31 Missense_Mutation p.S505F 0.14 tolerated(0.58) probably_damaging(0.989) TCGA-EB-A85J-01 17 10355528 10355528 T C MYH4 Silent p.E1156E 0.19 TCGA-EB-A85J-01 17 10401223 10401223 G A MYH1 Missense_Mutation p.A1398V 0.12 tolerated(0.11) benign(0.246) TCGA-EB-A85J-01 17 11593438 11593438 G A DNAH9 Missense_Mutation p.M1433I 0.25 benign(0.07) TCGA-EB-A85J-01 17 11827196 11827196 G A DNAH9 Missense_Mutation p.E3939K 0.24 probably_damaging(0.998) TCGA-EB-A85J-01 17 1585473 1585473 G A PRPF8 Silent p.F128F 0.42 TCGA-EB-A85J-01 17 15961014 15961014 G A NCOR1 Missense_Mutation p.S2069F 0.18 benign(0.125) TCGA-EB-A85J-01 17 1680578 1680578 C G SERPINF1 Missense_Mutation p.N365K 0.31 tolerated(0.32) possibly_damaging(0.647) TCGA-EB-A85J-01 17 17119785 17119785 G A FLCN Silent p.I403I 0.17 TCGA-EB-A85J-01 17 2966371 2966371 G A OR1D5 Silent p.L177L 0.50 TCGA-EB-A85J-01 17 34074229 34074229 C A GAS2L2 Missense_Mutation p.R297S 0.21 deleterious(0.03) benign(0.063) TCGA-EB-A85J-01 17 37264473 37264473 G A PLXDC1 Silent p.I165I 0.07 TCGA-EB-A85J-01 17 38567453 38567453 G A TOP2A Missense_Mutation p.P371S 0.20 deleterious(0) probably_damaging(0.996) TCGA-EB-A85J-01 17 39522799 39522799 G A KRT33B Silent p.L171L 0.09 TCGA-EB-A85J-01 17 39578641 39578641 C T KRT37 Missense_Mutation p.E260K 0.24 deleterious(0.02) benign(0.113) TCGA-EB-A85J-01 17 39659341 39659341 C T KRT13 Missense_Mutation p.E249K 0.29 tolerated(0.11) probably_damaging(0.999) TCGA-EB-A85J-01 17 41001157 41001157 C T AOC2 Missense_Mutation p.P548L 0.23 deleterious(0) probably_damaging(0.98) TCGA-EB-A85J-01 17 42337899 42337899 G A SLC4A1 Missense_Mutation p.L120F 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-EB-A85J-01 17 43363834 43363834 G A MAP3K14 RNA 0.44 TCGA-EB-A85J-01 17 45822322 45822322 C T TBX21 Nonsense_Mutation p.R400* 0.21 TCGA-EB-A85J-01 17 46423352 46423352 C T SKAP1 Silent p.Q65Q 0.25 TCGA-EB-A85J-01 17 46673729 46673729 C T HOXB6 3'UTR 0.20 TCGA-EB-A85J-01 17 53026937 53026937 C T TOM1L1 Missense_Mutation p.A414V 0.19 deleterious(0.03) benign(0.063) TCGA-EB-A85J-01 17 55752334 55752334 C T MSI2 Silent p.G264G 0.30 TCGA-EB-A85J-01 17 56277680 56277680 G A EPX Silent p.L544L 0.26 TCGA-EB-A85J-01 17 56658989 56658989 C T TEX14 Missense_Mutation p.E1098K 0.29 tolerated(0.34) possibly_damaging(0.521) TCGA-EB-A85J-01 17 61994640 61994640 G A GH1 3'UTR 0.27 TCGA-EB-A85J-01 17 62796648 62796648 G A PLEKHM1P RNA 0.20 TCGA-EB-A85J-01 17 66303731 66303731 G A ARSG Missense_Mutation p.G33R 0.06 tolerated(0.27) benign(0.091) TCGA-EB-A85J-01 17 6683980 6683980 G A FBXO39 Missense_Mutation p.G265R 0.27 tolerated(0.54) benign(0.099) TCGA-EB-A85J-01 17 73497988 73497988 C T CASKIN2 Missense_Mutation p.S1056N 0.15 tolerated(0.41) benign(0.003) TCGA-EB-A85J-01 17 78084624 78084624 C T GAA Silent p.F512F 0.08 TCGA-EB-A85J-01 18 13742617 13742617 C T RNMT Missense_Mutation p.P369S 0.29 deleterious(0) probably_damaging(0.996) TCGA-EB-A85J-01 18 28914084 28914084 C T DSG1 Silent p.F308F 0.24 TCGA-EB-A85J-01 18 28992903 28992903 G A DSG4 Nonsense_Mutation p.W842* 0.05 TCGA-EB-A85J-01 18 29036974 29036974 G A DSG3 Missense_Mutation p.E35K 0.28 deleterious(0.04) benign(0.055) TCGA-EB-A85J-01 18 50683829 50683829 G A DCC Silent p.A455A 0.32 TCGA-EB-A85J-01 18 52946829 52946829 G A TCF4 Missense_Mutation p.S305F 0.32 deleterious(0) probably_damaging(0.994) TCGA-EB-A85J-01 18 6974941 6974941 G A LAMA1 Missense_Mutation p.P2195L 0.14 tolerated(0.14) benign(0.232) TCGA-EB-A85J-01 18 6974942 6974942 G A LAMA1 Missense_Mutation p.P2195S 0.15 tolerated(0.52) benign(0.023) TCGA-EB-A85J-01 18 7231395 7231395 C T LRRC30 Missense_Mutation p.P87S 0.31 deleterious(0.02) benign(0.3) TCGA-EB-A85J-01 19 10506852 10506852 G A CDC37 Nonsense_Mutation p.Q44* 0.07 TCGA-EB-A85J-01 19 11892814 11892814 T C ZNF441 3'UTR 0.29 TCGA-EB-A85J-01 19 12430541 12430541 C T ZNF563 Missense_Mutation p.E100K 0.24 tolerated(0.18) benign(0.313) TCGA-EB-A85J-01 19 15918764 15918764 G A OR10H1 Silent p.F28F 0.18 TCGA-EB-A85J-01 19 18120503 18120503 G A ARRDC2 Missense_Mutation p.G198R 0.19 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 19 23544835 23544835 G A ZNF91 Missense_Mutation p.H316Y 0.33 deleterious(0.01) benign(0.136) TCGA-EB-A85J-01 19 35827024 35827024 C T CD22 Silent p.S166S 0.07 TCGA-EB-A85J-01 19 36342372 36342372 C T NPHS1 Silent p.G87G 0.17 TCGA-EB-A85J-01 19 40366527 40366527 G A FCGBP Silent p.L4569L 0.19 TCGA-EB-A85J-01 19 41455151 41455151 G A AC092071.1 3'Flank 0.21 TCGA-EB-A85J-01 19 42474693 42474693 G A ATP1A3 Silent p.G768G 0.18 TCGA-EB-A85J-01 19 42799021 42799021 C T CIC Missense_Mutation p.P1502L 0.24 probably_damaging(0.981) TCGA-EB-A85J-01 19 43411190 43411190 C T PSG6 Missense_Mutation p.G375E 0.02 deleterious(0.01) probably_damaging(0.994) TCGA-EB-A85J-01 19 43579518 43579518 G A PSG2 Silent p.L233L 0.26 TCGA-EB-A85J-01 19 43708046 43708046 G T PSG4 Missense_Mutation p.T141N 0.22 tolerated(0.22) benign(0.107) TCGA-EB-A85J-01 19 43708083 43708083 C T PSG4 Missense_Mutation p.D129N 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-EB-A85J-01 19 43968475 43968475 A G LYPD3 Splice_Site p.X71_splice 0.25 TCGA-EB-A85J-01 19 45024618 45024618 C T CEACAM20 RNA 0.20 TCGA-EB-A85J-01 19 4538858 4538858 G A LRG1 Silent p.F46F 0.19 TCGA-EB-A85J-01 19 47422239 47422239 C T ARHGAP35 Nonsense_Mutation p.Q103* 0.31 TCGA-EB-A85J-01 19 47823988 47823988 C T C5AR1 Silent p.L318L 0.08 TCGA-EB-A85J-01 19 4950750 4950750 C T UHRF1 RNA 0.28 TCGA-EB-A85J-01 19 49933747 49933747 G A SLC17A7 3'UTR 0.29 TCGA-EB-A85J-01 19 50210858 50210858 C T CPT1C Missense_Mutation p.P476L 0.32 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 19 50386268 50386268 C T TBC1D17 Silent p.F322F 0.28 TCGA-EB-A85J-01 19 5231480 5231480 G A PTPRS Missense_Mutation p.P666S 0.37 tolerated(0.68) benign(0.257) TCGA-EB-A85J-01 19 54545601 54545601 G A VSTM1 Silent p.A139A 0.32 TCGA-EB-A85J-01 19 55143633 55143633 G A LILRB1 Silent p.S202S 0.21 TCGA-EB-A85J-01 19 55805762 55805762 C T BRSK1 Silent p.L225L 0.27 TCGA-EB-A85J-01 19 57646342 57646342 C T ZIM3 Missense_Mutation p.A455T 0.20 deleterious(0.03) possibly_damaging(0.831) TCGA-EB-A85J-01 19 5776316 5776316 C T CATSPERD Missense_Mutation p.P696S 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 19 58084264 58084264 G A ZNF416 Silent p.S336S 0.05 TCGA-EB-A85J-01 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.07 TCGA-EB-A85J-01 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.07 deleterious(0) possibly_damaging(0.891) TCGA-EB-A85J-01 19 59082718 59082718 G A MZF1 Silent p.P13P 0.31 TCGA-EB-A85J-01 19 6364615 6364615 C T CLPP Missense_Mutation p.R174C 0.26 deleterious(0) probably_damaging(0.997) TCGA-EB-A85J-01 19 9045848 9045848 G A MUC16 Missense_Mutation p.S11928L 0.05 possibly_damaging(0.504) TCGA-EB-A85J-01 19 9048123 9048123 G A MUC16 Silent p.L11170L 0.13 TCGA-EB-A85J-01 19 9087286 9087286 C T MUC16 Missense_Mutation p.R1510K 0.27 unknown(0) TCGA-EB-A85J-01 19 9213883 9213883 G A OR7G2 Missense_Mutation p.L34F 0.16 tolerated(0.35) benign(0.026) TCGA-EB-A85J-01 1 110203829 110203829 C T GSTM4 Missense_Mutation p.L204F 0.20 tolerated(0.08) benign(0.01) TCGA-EB-A85J-01 1 111958958 111958958 G A OVGP1 Silent p.I381I 0.15 TCGA-EB-A85J-01 1 112042640 112042640 G A ADORA3 Intron 0.17 TCGA-EB-A85J-01 1 112042641 112042641 G A ADORA3 Intron 0.14 TCGA-EB-A85J-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.36 deleterious(0.01) benign(0.045) TCGA-EB-A85J-01 1 118166271 118166271 G A FAM46C Missense_Mutation p.E261K 0.34 tolerated(0.68) benign(0.034) TCGA-EB-A85J-01 1 119427535 119427535 G A TBX15 Silent p.L437L 0.17 TCGA-EB-A85J-01 1 120509065 120509065 T C NOTCH2 Missense_Mutation p.N501D 0.18 tolerated(0.11) probably_damaging(0.998) TCGA-EB-A85J-01 1 12907971 12907971 C T HNRNPCL1 Missense_Mutation p.D58N 0.09 tolerated(0.11) benign(0.003) TCGA-EB-A85J-01 1 149885378 149885378 G A SV2A Silent p.F5F 0.12 TCGA-EB-A85J-01 1 152286590 152286590 C T FLG Missense_Mutation p.E258K 0.14 benign(0.352) TCGA-EB-A85J-01 1 154473964 154473964 G A SHE Missense_Mutation p.S180F 0.31 deleterious(0.01) possibly_damaging(0.653) TCGA-EB-A85J-01 1 155264431 155264431 G A PKLR Silent p.V269V 0.25 TCGA-EB-A85J-01 1 155936226 155936226 G A ARHGEF2 Silent p.S107S 0.22 TCGA-EB-A85J-01 1 15773113 15773113 C T CTRC 3'UTR 0.26 TCGA-EB-A85J-01 1 158631195 158631195 C T SPTA1 Silent p.K823K 0.41 TCGA-EB-A85J-01 1 159283797 159283797 G A OR10J3 Missense_Mutation p.S218F 0.14 deleterious(0) probably_damaging(0.987) TCGA-EB-A85J-01 1 161011505 161011506 - AG USF1 Frame_Shift_Ins p.A137* 0.10 TCGA-EB-A85J-01 1 161512713 161512713 G C FCGR3A 3'UTR 0.16 TCGA-EB-A85J-01 1 161682935 161682935 C T FCRLA Missense_Mutation p.P305L 0.16 deleterious(0) probably_damaging(0.917) TCGA-EB-A85J-01 1 163117024 163117024 G A RGS5 3'UTR 0.33 TCGA-EB-A85J-01 1 171251211 171251211 G A FMO1 Missense_Mutation p.E308K 0.19 deleterious(0.03) benign(0.038) TCGA-EB-A85J-01 1 171753635 171753635 C T METTL13 Silent p.F303F 0.50 TCGA-EB-A85J-01 1 172348167 172348167 G A DNM3 Missense_Mutation p.D635N 0.63 tolerated(0.08) benign(0.133) TCGA-EB-A85J-01 1 175372678 175372678 C T TNR Missense_Mutation p.E192K 0.17 tolerated(0.17) benign(0.152) TCGA-EB-A85J-01 1 179078141 179078141 G A ABL2 Missense_Mutation p.P754L 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A85J-01 1 192628484 192628484 C T RGS13 Missense_Mutation p.S104L 0.10 tolerated(0.62) benign(0.006) TCGA-EB-A85J-01 1 196879551 196879551 T G CFHR4 Missense_Mutation p.Y313D 0.15 tolerated(0.11) possibly_damaging(0.525) TCGA-EB-A85J-01 1 196973845 196973845 C T CFHR5 Missense_Mutation p.S462L 0.10 tolerated(0.05) probably_damaging(1) TCGA-EB-A85J-01 1 201186546 201186546 G A IGFN1 Missense_Mutation p.G3243R 0.06 probably_damaging(1) TCGA-EB-A85J-01 1 201751902 201751902 C T NAV1 Silent p.S754S 0.17 TCGA-EB-A85J-01 1 202572193 202572193 C T SYT2 Silent p.E133E 0.06 TCGA-EB-A85J-01 1 203153721 203153721 C T CHI3L1 Nonsense_Mutation p.W99* 0.40 TCGA-EB-A85J-01 1 205633637 205633637 C T SLC45A3 Missense_Mutation p.E50K 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-EB-A85J-01 1 205890935 205890935 G A SLC26A9 Missense_Mutation p.A605V 0.73 tolerated(0.21) benign(0.016) TCGA-EB-A85J-01 1 207263802 207263802 G A C4BPB Missense_Mutation p.D70N 0.33 tolerated(0.89) benign(0.033) TCGA-EB-A85J-01 1 207643180 207643180 G A CR2 Missense_Mutation p.E320K 0.15 tolerated(0.21) benign(0.044) TCGA-EB-A85J-01 1 209806475 209806475 G A LAMB3 Nonsense_Mutation p.Q190* 0.08 TCGA-EB-A85J-01 1 211192377 211192377 G A KCNH1 Silent p.I260I 0.16 TCGA-EB-A85J-01 1 2116082 2116082 G A PRKCZ Missense_Mutation p.D546N 0.19 tolerated(0.06) benign(0.177) TCGA-EB-A85J-01 1 214705918 214705918 G A PTPN14 Intron 0.16 TCGA-EB-A85J-01 1 215814052 215814052 G A USH2A Missense_Mutation p.S4939L 0.10 benign(0.009) TCGA-EB-A85J-01 1 228335348 228335348 C T GUK1 Silent p.T162T 0.68 TCGA-EB-A85J-01 1 22927528 22927528 C T EPHA8 Silent p.L892L 0.24 TCGA-EB-A85J-01 1 248112339 248112339 C T OR2L8 Silent p.F60F 0.55 TCGA-EB-A85J-01 1 248263121 248263121 G A OR2L13 Nonsense_Mutation p.W148* 0.16 TCGA-EB-A85J-01 1 248263611 248263611 G A OR2L13 Missense_Mutation p.E312K 0.15 tolerated_low_confidence(0.91) benign(0.001) TCGA-EB-A85J-01 1 248308852 248308852 C T OR2M5 Missense_Mutation p.L135F 0.03 deleterious(0.04) benign(0.103) TCGA-EB-A85J-01 1 248309355 248309355 G A OR2M5 Silent p.R302R 0.14 TCGA-EB-A85J-01 1 27675587 27675587 C T SYTL1 Missense_Mutation p.S159L 0.24 tolerated(0.17) benign(0.113) TCGA-EB-A85J-01 1 34181957 34181957 T C CSMD2 Missense_Mutation p.N1009S 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-EB-A85J-01 1 38464961 38464961 C G FHL3 Missense_Mutation p.E42Q 0.26 tolerated(0.06) probably_damaging(0.988) TCGA-EB-A85J-01 1 40150270 40150270 C T HPCAL4 Silent p.G2G 0.15 TCGA-EB-A85J-01 1 44804982 44804982 G A ERI3 Missense_Mutation p.S75F 0.32 deleterious_low_confidence(0) possibly_damaging(0.462) TCGA-EB-A85J-01 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.22 TCGA-EB-A85J-01 1 78183662 78183662 G A USP33 Missense_Mutation p.S634L 0.30 deleterious(0.01) benign(0.257) TCGA-EB-A85J-01 1 8399673 8399673 C T SLC45A1 Missense_Mutation p.S632L 0.21 tolerated(0.34) benign(0.386) TCGA-EB-A85J-01 1 9027849 9027849 G A CA6 Missense_Mutation p.D235N 0.36 tolerated(0.13) benign(0.013) TCGA-EB-A85J-01 1 94939352 94939352 C T ABCD3 Silent p.F122F 0.27 TCGA-EB-A85J-01 20 1145056 1145056 C T PSMF1 Missense_Mutation p.P234S 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A85J-01 20 23420880 23420880 G A CSTL1 5'UTR 0.41 TCGA-EB-A85J-01 20 31671592 31671592 C T BPIFB4 Missense_Mutation p.L197F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A85J-01 20 33328821 33328821 G A NCOA6 Missense_Mutation p.P1747S 0.31 benign(0.016) TCGA-EB-A85J-01 20 33330544 33330544 G A NCOA6 Silent p.P1172P 0.06 TCGA-EB-A85J-01 20 33962003 33962003 G A UQCC1 Silent p.F130F 0.35 TCGA-EB-A85J-01 20 37137789 37137789 C T RALGAPB Silent p.I270I 0.43 TCGA-EB-A85J-01 20 43851742 43851742 C T SEMG2 Missense_Mutation p.S490F 0.15 deleterious(0) unknown(0) TCGA-EB-A85J-01 20 55101052 55101052 C T FAM209A Nonsense_Mutation p.R148* 0.12 TCGA-EB-A85J-01 20 60448952 60448952 G A CDH4 Missense_Mutation p.R349Q 0.40 deleterious(0) probably_damaging(0.997) TCGA-EB-A85J-01 20 60511948 60511948 G A CDH4 Missense_Mutation p.G900R 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 20 61039963 61039963 C T GATA5 Missense_Mutation p.A375T 0.49 tolerated(0.11) benign(0.166) TCGA-EB-A85J-01 20 62839674 62839674 G A MYT1 Silent p.R375R 0.06 TCGA-EB-A85J-01 20 9434089 9434089 G A PLCB4 Silent p.E980E 0.24 TCGA-EB-A85J-01 20 9520044 9520044 C T PAK7 3'UTR 0.41 TCGA-EB-A85J-01 21 10951412 10951412 G A TPTE Silent p.F100F 0.07 TCGA-EB-A85J-01 21 31588154 31588154 C T CLDN8 Nonsense_Mutation p.W30* 0.14 TCGA-EB-A85J-01 21 39427033 39427033 C T DSCR4 Nonsense_Mutation p.W91* 0.23 TCGA-EB-A85J-01 21 45389112 45389112 C T AGPAT3 Silent p.T154T 0.16 TCGA-EB-A85J-01 21 46554688 46554688 C T ADARB1 Intron 0.23 TCGA-EB-A85J-01 22 16267070 16267070 C T POTEH Missense_Mutation p.G460E 0.04 tolerated(0.11) benign(0.008) TCGA-EB-A85J-01 22 17690307 17690307 G A CECR1 Silent p.F87F 0.17 TCGA-EB-A85J-01 22 20819207 20819207 G A KLHL22 Silent p.F350F 0.20 TCGA-EB-A85J-01 22 23237571 23237571 C T IGLL5 Silent p.N114N 0.23 TCGA-EB-A85J-01 22 23627358 23627358 C T BCR Silent p.S792S 0.26 TCGA-EB-A85J-01 22 24658406 24658406 C T POM121L9P RNA 0.28 TCGA-EB-A85J-01 22 38284595 38284595 G A EIF3L 3'UTR 0.36 TCGA-EB-A85J-01 22 40417398 40417398 C T FAM83F Missense_Mutation p.S295F 0.27 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 22 41257909 41257909 C T DNAJB7 Nonsense_Mutation p.W30* 0.06 TCGA-EB-A85J-01 22 43088812 43088812 C T A4GALT 3'UTR 0.44 TCGA-EB-A85J-01 22 50898421 50898421 G A SBF1 Missense_Mutation p.R1151C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 22 50926159 50926159 C T MIOX Silent p.F55F 0.26 TCGA-EB-A85J-01 2 100903381 100903381 G A LONRF2 Missense_Mutation p.P689S 0.20 deleterious(0) benign(0.129) TCGA-EB-A85J-01 2 111666394 111666394 G A ACOXL Missense_Mutation p.E273K 0.25 tolerated(0.19) benign(0.026) TCGA-EB-A85J-01 2 113780333 113780333 G A IL36B Missense_Mutation p.S138F 0.26 tolerated_low_confidence(1) benign(0) TCGA-EB-A85J-01 2 120194697 120194697 C T TMEM37 Missense_Mutation p.A85V 0.20 deleterious(0.03) benign(0.031) TCGA-EB-A85J-01 2 141253176 141253176 C T LRP1B Missense_Mutation p.E2998K 0.05 benign(0.292) TCGA-EB-A85J-01 2 141526877 141526877 C T LRP1B Missense_Mutation p.G1888E 0.20 probably_damaging(0.931) TCGA-EB-A85J-01 2 141571330 141571330 G A LRP1B Missense_Mutation p.S1752L 0.34 benign(0.307) TCGA-EB-A85J-01 2 143799643 143799643 C T KYNU Nonsense_Mutation p.R434* 0.28 TCGA-EB-A85J-01 2 168104827 168104827 C T XIRP2 Missense_Mutation p.P2309S 0.17 probably_damaging(1) TCGA-EB-A85J-01 2 172411076 172411076 C T CYBRD1 Silent p.F200F 0.29 TCGA-EB-A85J-01 2 178981077 178981077 C T RBM45 Missense_Mutation p.S130F 0.33 deleterious(0) possibly_damaging(0.807) TCGA-EB-A85J-01 2 179441340 179441340 C T TTN Missense_Mutation p.E23211K 0.29 TCGA-EB-A85J-01 2 179547541 179547541 C T TTN Missense_Mutation p.E10993K 0.26 TCGA-EB-A85J-01 2 179629377 179629377 G A TTN Missense_Mutation p.H3289Y 0.06 TCGA-EB-A85J-01 2 179633577 179633577 C T TTN Missense_Mutation p.G2996S 0.20 TCGA-EB-A85J-01 2 186671203 186671203 G A FSIP2 Missense_Mutation p.D5813N 0.19 benign(0.057) TCGA-EB-A85J-01 2 196756437 196756437 G A DNAH7 Missense_Mutation p.S1663F 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 2 197184506 197184506 C T HECW2 Missense_Mutation p.G370R 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.771) TCGA-EB-A85J-01 2 200193615 200193615 G A SATB2 Silent p.L398L 0.21 TCGA-EB-A85J-01 2 202512489 202512489 C T MPP4 Silent p.S548S 0.17 TCGA-EB-A85J-01 2 207482312 207482312 G A ADAM23 Silent p.K820K 0.22 TCGA-EB-A85J-01 2 207575299 207575299 A G DYTN Missense_Mutation p.S15P 0.16 deleterious(0) probably_damaging(0.986) TCGA-EB-A85J-01 2 210559598 210559598 G A MAP2 Missense_Mutation p.D902N 0.30 deleterious_low_confidence(0.02) benign(0.084) TCGA-EB-A85J-01 2 210642247 210642247 C T UNC80 Silent p.F188F 0.04 TCGA-EB-A85J-01 2 219297647 219297647 C T VIL1 Silent p.I491I 0.29 TCGA-EB-A85J-01 2 220420680 220420680 G A OBSL1 Intron 0.18 TCGA-EB-A85J-01 2 226447179 226447179 A G NYAP2 Missense_Mutation p.N349S 0.20 tolerated(0.1) possibly_damaging(0.598) TCGA-EB-A85J-01 2 227919429 227919429 G A COL4A4 Missense_Mutation p.P914L 0.23 unknown(0) TCGA-EB-A85J-01 2 234669527 234669527 C T UGT1A8 Intron 0.19 TCGA-EB-A85J-01 2 237028870 237028870 G A AGAP1 Missense_Mutation p.E717K 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A85J-01 2 28762044 28762044 A C PLB1 Missense_Mutation p.S233R 0.23 tolerated(0.25) benign(0.019) TCGA-EB-A85J-01 2 31590878 31590878 C T XDH Missense_Mutation p.E716K 0.04 tolerated(0.1) benign(0.022) TCGA-EB-A85J-01 2 37121137 37121137 G A STRN Nonsense_Mutation p.R279* 0.24 TCGA-EB-A85J-01 2 49190697 49190697 A T FSHR Silent p.V421V 0.21 TCGA-EB-A85J-01 2 70933391 70933391 C T ADD2 Silent p.Q50Q 0.35 TCGA-EB-A85J-01 2 84518368 84518368 C T FUNDC2P2 RNA 0.28 TCGA-EB-A85J-01 2 87085218 87085218 G A CD8B Missense_Mutation p.P122L 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-EB-A85J-01 3 100354539 100354539 C T GPR128 Missense_Mutation p.P156S 0.22 tolerated(0.84) benign(0.001) TCGA-EB-A85J-01 3 108183551 108183551 G A MYH15 Silent p.L575L 0.08 TCGA-EB-A85J-01 3 11712783 11712783 G A VGLL4 Missense_Mutation p.P11L 0.28 tolerated_low_confidence(0.09) possibly_damaging(0.851) TCGA-EB-A85J-01 3 120469688 120469688 C T GTF2E1 Missense_Mutation p.R97C 0.07 deleterious(0) benign(0.141) TCGA-EB-A85J-01 3 121976150 121976150 C T CASR Silent p.P136P 0.49 TCGA-EB-A85J-01 3 124839485 124839485 G A SLC12A8 Missense_Mutation p.A261V 0.32 tolerated(0.05) benign(0.052) TCGA-EB-A85J-01 3 127295876 127295876 G A TPRA1 Missense_Mutation p.S101F 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 3 130188058 130188058 C T COL6A5 Silent p.L2404L 0.27 TCGA-EB-A85J-01 3 151545415 151545415 T C AADAC Missense_Mutation p.Y219H 0.21 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 3 156395590 156395590 C T TIPARP Missense_Mutation p.P35L 0.23 tolerated_low_confidence(0.91) benign(0.012) TCGA-EB-A85J-01 3 16261032 16261032 C T GALNT15 Silent p.F505F 0.23 TCGA-EB-A85J-01 3 164786915 164786915 G A SI Silent p.F108F 0.25 TCGA-EB-A85J-01 3 174814794 174814794 C T NAALADL2 Silent p.S86S 0.25 TCGA-EB-A85J-01 3 175184764 175184764 C T NAALADL2 Intron 0.25 TCGA-EB-A85J-01 3 179537722 179537722 C T PEX5L Missense_Mutation p.E289K 0.06 tolerated(0.13) probably_damaging(0.998) TCGA-EB-A85J-01 3 183225995 183225995 A T KLHL6 Missense_Mutation p.L254H 0.16 deleterious(0) probably_damaging(0.982) TCGA-EB-A85J-01 3 189038595 189038595 A G TPRG1 Missense_Mutation p.S272G 0.09 tolerated(0.26) benign(0.009) TCGA-EB-A85J-01 3 195798938 195798938 G A TFRC Missense_Mutation p.R174C 0.42 deleterious(0.02) possibly_damaging(0.448) TCGA-EB-A85J-01 3 26751688 26751688 C T LRRC3B Silent p.S175S 0.17 TCGA-EB-A85J-01 3 39230315 39230315 A C XIRP1 Missense_Mutation p.S208A 0.28 deleterious(0.02) benign(0.225) TCGA-EB-A85J-01 3 48636514 48636514 G A UQCRC1 3'UTR 0.19 TCGA-EB-A85J-01 3 49200408 49200408 G A CCDC71 Missense_Mutation p.P412S 0.24 tolerated(0.2) unknown(0) TCGA-EB-A85J-01 3 52537910 52537910 G A STAB1 Silent p.G338G 0.32 TCGA-EB-A85J-01 3 81548308 81548308 A G GBE1 Missense_Mutation p.F669L 0.44 deleterious(0.03) possibly_damaging(0.626) TCGA-EB-A85J-01 3 86114860 86114860 G A CADM2 Missense_Mutation p.R392Q 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-EB-A85J-01 3 9068650 9068650 G A SRGAP3 Silent p.V523V 0.22 TCGA-EB-A85J-01 3 96706486 96706486 G A EPHA6 Missense_Mutation p.D255N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 3 98073291 98073291 G A OR5K4 Missense_Mutation p.M198I 0.33 tolerated(0.19) benign(0.029) TCGA-EB-A85J-01 4 100257836 100257836 C T ADH1C 3'UTR 0.23 TCGA-EB-A85J-01 4 106890117 106890117 G A NPNT Silent p.L586L 0.24 TCGA-EB-A85J-01 4 114274617 114274617 C T ANK2 Missense_Mutation p.P1615S 0.10 benign(0.138) TCGA-EB-A85J-01 4 114823854 114823854 C T ARSJ Missense_Mutation p.G459E 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 4 134072051 134072051 A G PCDH10 Silent p.Q252Q 0.21 TCGA-EB-A85J-01 4 140811538 140811538 G A MAML3 Missense_Mutation p.S351F 0.28 possibly_damaging(0.866) TCGA-EB-A85J-01 4 155719190 155719190 C T RBM46 Nonsense_Mutation p.R127* 0.22 TCGA-EB-A85J-01 4 156831286 156831286 C T TDO2 Missense_Mutation p.R181C 0.26 deleterious(0.04) probably_damaging(0.922) TCGA-EB-A85J-01 4 16510216 16510216 C T LDB2 Missense_Mutation p.S278N 0.24 tolerated(0.56) benign(0.002) TCGA-EB-A85J-01 4 175898363 175898363 C T ADAM29 Missense_Mutation p.P563S 0.24 deleterious(0) probably_damaging(0.986) TCGA-EB-A85J-01 4 189020212 189020212 C T TRIML2 Missense_Mutation p.E150K 0.18 tolerated(0.18) benign(0.066) TCGA-EB-A85J-01 4 189068456 189068456 C T TRIML1 Missense_Mutation p.S446F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 4 36214106 36214106 G A ARAP2 Nonsense_Mutation p.R349* 0.19 TCGA-EB-A85J-01 4 40438601 40438601 G A RBM47 Missense_Mutation p.S396F 0.24 deleterious(0.02) possibly_damaging(0.603) TCGA-EB-A85J-01 4 47427775 47427775 G A GABRB1 Missense_Mutation p.D389N 0.30 tolerated(0.18) benign(0.066) TCGA-EB-A85J-01 4 49040157 49040157 C T CWH43 Missense_Mutation p.S588F 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-EB-A85J-01 4 52944971 52944971 C T SPATA18 Missense_Mutation p.S364F 0.25 deleterious(0) benign(0.347) TCGA-EB-A85J-01 4 69195778 69195778 G A YTHDC1 Missense_Mutation p.P431S 0.27 tolerated(0.08) probably_damaging(0.941) TCGA-EB-A85J-01 4 69416487 69416487 C T UGT2B17 Missense_Mutation p.M407I 0.24 deleterious(0.04) possibly_damaging(0.773) TCGA-EB-A85J-01 4 70066135 70066135 C T UGT2B11 3'UTR 0.30 TCGA-EB-A85J-01 4 76407666 76407666 G A RCHY1 3'UTR 0.26 TCGA-EB-A85J-01 4 88026976 88026976 C T AFF1 Missense_Mutation p.P452L 0.28 deleterious(0.03) unknown(0) TCGA-EB-A85J-01 4 95155191 95155191 C T SMARCAD1 Missense_Mutation p.S152L 0.12 tolerated_low_confidence(0.29) benign(0) TCGA-EB-A85J-01 5 115335561 115335561 G A AQPEP Missense_Mutation p.E493K 0.32 tolerated(0.06) benign(0.073) TCGA-EB-A85J-01 5 120022223 120022223 C T PRR16 Missense_Mutation p.P222L 0.32 tolerated_low_confidence(0.06) benign(0.023) TCGA-EB-A85J-01 5 122682411 122682411 G A CEP120 Silent p.S921S 0.22 TCGA-EB-A85J-01 5 126250789 126250789 C T MARCH3 Missense_Mutation p.E76K 0.39 deleterious(0) probably_damaging(0.969) TCGA-EB-A85J-01 5 134782310 134782310 C T C5orf20 Silent p.K163K 0.30 TCGA-EB-A85J-01 5 13692233 13692233 G A DNAH5 Missense_Mutation p.P4579S 0.21 possibly_damaging(0.876) TCGA-EB-A85J-01 5 137622196 137622196 C T CDC25C Missense_Mutation p.G384S 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 5 13792230 13792230 C T DNAH5 Nonsense_Mutation p.W2774* 0.20 TCGA-EB-A85J-01 5 140181914 140181914 G A PCDHA3 Missense_Mutation p.D378N 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EB-A85J-01 5 140739820 140739820 G A PCDHGB2 Missense_Mutation p.E40K 0.29 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 5 140783526 140783526 C T PCDHGA9 Missense_Mutation p.S336L 0.36 deleterious_low_confidence(0.01) benign(0.018) TCGA-EB-A85J-01 5 142586975 142586975 C T ARHGAP26 Missense_Mutation p.P734L 0.26 tolerated(0.06) possibly_damaging(0.713) TCGA-EB-A85J-01 5 145441999 145441999 C T SH3RF2 Missense_Mutation p.T642I 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 5 147784268 147784268 C T FBXO38 Missense_Mutation p.P205S 0.22 deleterious(0) probably_damaging(0.991) TCGA-EB-A85J-01 5 151784181 151784181 C T NMUR2 Missense_Mutation p.R165K 0.35 tolerated(0.16) benign(0.023) TCGA-EB-A85J-01 5 152870361 152870361 G A GRIA1 5'Flank 0.23 TCGA-EB-A85J-01 5 159992531 159992531 C T ATP10B Missense_Mutation p.G1439R 0.23 tolerated_low_confidence(0.23) benign(0.231) TCGA-EB-A85J-01 5 168690629 168690629 G A SLIT3 Intron 0.33 TCGA-EB-A85J-01 5 169535115 169535115 C T FOXI1 Missense_Mutation p.R213C 0.27 deleterious(0) probably_damaging(0.956) TCGA-EB-A85J-01 5 171554404 171554404 C T STK10 Missense_Mutation p.G115R 0.25 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 5 177419924 177419924 G A PROP1 Missense_Mutation p.S156F 0.39 deleterious(0.01) possibly_damaging(0.726) TCGA-EB-A85J-01 5 180474955 180474955 C T BTNL9 Silent p.P46P 0.23 TCGA-EB-A85J-01 5 19520867 19520867 G A CDH18 Missense_Mutation p.H471Y 0.29 tolerated(0.1) benign(0.015) TCGA-EB-A85J-01 5 23526679 23526679 G A PRDM9 Missense_Mutation p.M494I 0.38 tolerated(0.31) benign(0.004) TCGA-EB-A85J-01 5 33588896 33588896 C T ADAMTS12 Nonsense_Mutation p.W891* 0.26 TCGA-EB-A85J-01 5 35014123 35014123 G A AGXT2 Silent p.G355G 0.30 TCGA-EB-A85J-01 5 35814584 35814584 C T SPEF2 Nonsense_Mutation p.Q1800* 0.09 TCGA-EB-A85J-01 5 39289024 39289024 C T C9 Silent p.V482V 0.31 TCGA-EB-A85J-01 5 41153958 41153958 C T C6 Silent p.G748G 0.24 TCGA-EB-A85J-01 5 5182318 5182318 G A ADAMTS16 Silent p.V221V 0.23 TCGA-EB-A85J-01 5 54468804 54468804 C T CDC20B Missense_Mutation p.A9T 0.33 deleterious(0) possibly_damaging(0.676) TCGA-EB-A85J-01 5 75927849 75927849 G A IQGAP2 Missense_Mutation p.R593K 0.24 tolerated(0.79) benign(0) TCGA-EB-A85J-01 5 7831933 7831933 C T C5orf49 3'UTR 0.07 TCGA-EB-A85J-01 5 79025300 79025300 G A CMYA5 Missense_Mutation p.E238K 0.33 possibly_damaging(0.636) TCGA-EB-A85J-01 5 79351636 79351636 G A THBS4 Silent p.G107G 0.31 TCGA-EB-A85J-01 5 82833605 82833605 G A VCAN Missense_Mutation p.V1595I 0.06 tolerated(0.48) benign(0.025) TCGA-EB-A85J-01 5 9044552 9044552 G A SEMA5A Missense_Mutation p.P1013L 0.29 tolerated(0.1) benign(0.268) TCGA-EB-A85J-01 6 110935793 110935793 G A CDK19 Missense_Mutation p.S485F 0.17 deleterious_low_confidence(0) unknown(0) TCGA-EB-A85J-01 6 116879245 116879245 G A FAM26D Nonsense_Mutation p.W129* 0.17 TCGA-EB-A85J-01 6 129837508 129837508 C T LAMA2 3'UTR 0.23 TCGA-EB-A85J-01 6 131902514 131902514 G A ARG1 Missense_Mutation p.G162E 0.36 tolerated(0.29) benign(0.008) TCGA-EB-A85J-01 6 131919768 131919768 G A MED23 Missense_Mutation p.S785F 0.39 deleterious(0.03) benign(0.011) TCGA-EB-A85J-01 6 136468578 136468578 C T PDE7B Missense_Mutation p.R86C 0.28 deleterious(0.02) possibly_damaging(0.816) TCGA-EB-A85J-01 6 142691323 142691323 G A GPR126 Silent p.R154R 0.19 TCGA-EB-A85J-01 6 161587322 161587322 A G AGPAT4 Silent p.F102F 0.26 TCGA-EB-A85J-01 6 167787872 167787872 G A TCP10 Silent p.F252F 0.17 TCGA-EB-A85J-01 6 170105416 170105416 G A PHF10 Silent p.G408G 0.25 TCGA-EB-A85J-01 6 25619834 25619834 C T LRRC16A 3'UTR 0.52 TCGA-EB-A85J-01 6 25850295 25850295 C T SLC17A3 Silent p.R368R 0.04 TCGA-EB-A85J-01 6 26385530 26385530 C T BTN2A2 Missense_Mutation p.R128C 0.12 tolerated(0.2) benign(0.021) TCGA-EB-A85J-01 6 27834903 27834903 C T HIST1H1B Silent p.A135A 0.19 TCGA-EB-A85J-01 6 27925094 27925094 C T OR2B6 Missense_Mutation p.P26S 0.18 tolerated(0.25) benign(0.033) TCGA-EB-A85J-01 6 28543037 28543037 C T SCAND3 Missense_Mutation p.R482K 0.18 tolerated_low_confidence(0.33) probably_damaging(0.931) TCGA-EB-A85J-01 6 31940145 31940145 C T STK19 Missense_Mutation p.S96F 0.04 tolerated_low_confidence(0.55) benign(0.12) TCGA-EB-A85J-01 6 32803010 32803010 G A TAP2 Missense_Mutation p.S289L 0.12 deleterious(0) probably_damaging(0.995) TCGA-EB-A85J-01 6 34741241 34741241 C T SNRPC Missense_Mutation p.P125L 0.23 deleterious(0) unknown(0) TCGA-EB-A85J-01 6 35965686 35965686 G A SLC26A8 Silent p.F152F 0.14 TCGA-EB-A85J-01 6 36298121 36298121 C T C6orf222 Missense_Mutation p.R116K 0.14 tolerated(1) possibly_damaging(0.567) TCGA-EB-A85J-01 6 36842552 36842552 G A PPIL1 5'UTR 0.18 TCGA-EB-A85J-01 6 40400714 40400714 G A LRFN2 Missense_Mutation p.P47S 0.08 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 6 4049267 4049267 C T PRPF4B Silent p.A651A 0.18 TCGA-EB-A85J-01 6 4099316 4099316 G A C6orf201 Silent p.P56P 0.13 TCGA-EB-A85J-01 6 46190989 46190989 G A RCAN2 Silent p.V207V 0.14 TCGA-EB-A85J-01 6 46826166 46826166 C T GPR116 Silent p.R1158R 0.15 TCGA-EB-A85J-01 6 46846123 46846123 C T GPR116 Silent p.L352L 0.18 TCGA-EB-A85J-01 6 49676848 49676848 C T CRISP2 Missense_Mutation p.G21E 0.21 tolerated(0.11) benign(0.178) TCGA-EB-A85J-01 6 54173402 54173402 G A TINAG Nonsense_Mutation p.W18* 0.08 TCGA-EB-A85J-01 6 64421686 64421686 C T PHF3 Missense_Mutation p.S1401F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 6 80197214 80197214 C T LCA5 Missense_Mutation p.G534E 0.20 tolerated(0.22) benign(0.089) TCGA-EB-A85J-01 6 84117597 84117597 C T ME1 Silent p.E34E 0.24 TCGA-EB-A85J-01 6 86243478 86243478 A G SNX14 Missense_Mutation p.V550A 0.27 tolerated(0.32) benign(0.003) TCGA-EB-A85J-01 6 90661210 90661210 G A BACH2 Silent p.A205A 0.26 TCGA-EB-A85J-01 6 97063566 97063566 C T FHL5 Missense_Mutation p.S258F 0.23 deleterious(0) probably_damaging(0.992) TCGA-EB-A85J-01 7 104702645 104702645 G T KMT2E Nonsense_Mutation p.E36* 0.22 TCGA-EB-A85J-01 7 105135679 105135679 G A PUS7 Missense_Mutation p.P251L 0.05 deleterious(0) probably_damaging(0.995) TCGA-EB-A85J-01 7 111970166 111970166 C T ZNF277 Silent p.T232T 0.25 TCGA-EB-A85J-01 7 127013986 127013986 G A ZNF800 Silent p.G468G 0.23 TCGA-EB-A85J-01 7 141618701 141618701 C T OR9A4 Missense_Mutation p.T9I 0.17 deleterious(0.03) benign(0.003) TCGA-EB-A85J-01 7 141619304 141619304 C T OR9A4 Missense_Mutation p.S210F 0.25 deleterious(0) probably_damaging(0.988) TCGA-EB-A85J-01 7 141673226 141673226 C T TAS2R38 Silent p.L88L 0.28 TCGA-EB-A85J-01 7 142168527 142168527 A G TRBV5-4 Missense_Mutation p.F66L 0.33 tolerated(0.25) benign(0.002) TCGA-EB-A85J-01 7 142197673 142197673 C T TRBV11-2 RNA 0.06 TCGA-EB-A85J-01 7 142499093 142499093 G A TRBC2 Missense_Mutation p.E124K 0.13 tolerated(0.14) benign(0.31) TCGA-EB-A85J-01 7 142575426 142575426 G A TRPV6 Silent p.P109P 0.28 TCGA-EB-A85J-01 7 143657768 143657768 G A OR2F1 Silent p.K235K 0.24 TCGA-EB-A85J-01 7 143807307 143807307 C T OR2A2 Missense_Mutation p.S211F 0.22 tolerated(0.08) benign(0.027) TCGA-EB-A85J-01 7 144060493 144060493 G A ARHGEF5 Missense_Mutation p.G244E 0.14 tolerated(0.11) benign(0.028) TCGA-EB-A85J-01 7 146829480 146829480 C T CNTNAP2 Silent p.L409L 0.30 TCGA-EB-A85J-01 7 150489175 150489175 C T TMEM176B Missense_Mutation p.R230Q 0.17 tolerated(0.17) benign(0.426) TCGA-EB-A85J-01 7 15240953 15240953 C T AGMO Missense_Mutation p.G432E 0.28 tolerated(0.15) possibly_damaging(0.701) TCGA-EB-A85J-01 7 154379654 154379654 C T DPP6 Intron 0.15 TCGA-EB-A85J-01 7 157475473 157475473 C T PTPRN2 Missense_Mutation p.E649K 0.29 deleterious(0.04) benign(0.209) TCGA-EB-A85J-01 7 18067034 18067034 G A PRPS1L1 Silent p.I124I 0.06 TCGA-EB-A85J-01 7 18687588 18687588 G A HDAC9 Missense_Mutation p.E406K 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EB-A85J-01 7 23826237 23826237 C T STK31 Silent p.F795F 0.22 TCGA-EB-A85J-01 7 2740260 2740260 C T AMZ1 Missense_Mutation p.L59F 0.28 tolerated(0.18) benign(0.388) TCGA-EB-A85J-01 7 29983678 29983678 G A SCRN1 Silent p.F173F 0.36 TCGA-EB-A85J-01 7 5920551 5920551 G A OCM Missense_Mutation p.D11N 0.29 deleterious(0.04) probably_damaging(0.943) TCGA-EB-A85J-01 7 64863995 64863995 G A ZNF92 Missense_Mutation p.R323K 0.27 tolerated(0.46) benign(0.01) TCGA-EB-A85J-01 7 73933803 73933803 C T GTF2IRD1 Missense_Mutation p.P256S 0.22 tolerated(0.31) benign(0.039) TCGA-EB-A85J-01 7 7412710 7412710 C T COL28A1 Missense_Mutation p.E943K 0.21 tolerated(0.36) benign(0.005) TCGA-EB-A85J-01 7 82580204 82580204 C T PCLO Missense_Mutation p.E3234K 0.07 unknown(0) TCGA-EB-A85J-01 7 82583267 82583267 G A PCLO Silent p.S2334S 0.06 TCGA-EB-A85J-01 7 92730994 92730994 G A SAMD9 Missense_Mutation p.R1473C 0.08 tolerated(0.07) benign(0.102) TCGA-EB-A85J-01 7 97365661 97365661 T G TAC1 Missense_Mutation p.S114A 0.05 tolerated(0.33) benign(0.012) TCGA-EB-A85J-01 7 99434114 99434114 G A CYP3A43 Missense_Mutation p.G37E 0.24 deleterious(0) possibly_damaging(0.685) TCGA-EB-A85J-01 8 100831734 100831734 C T VPS13B Nonsense_Mutation p.Q2931* 0.06 TCGA-EB-A85J-01 8 10583914 10583914 G A SOX7 Silent p.P219P 0.28 TCGA-EB-A85J-01 8 110131690 110131690 G A TRHR 3'UTR 0.14 TCGA-EB-A85J-01 8 125078746 125078746 T C FER1L6 Silent p.I1211I 0.46 TCGA-EB-A85J-01 8 135649758 135649758 G A ZFAT Missense_Mutation p.R132W 0.11 deleterious(0.01) probably_damaging(0.913) TCGA-EB-A85J-01 8 139263137 139263137 C T FAM135B Silent p.V163V 0.27 TCGA-EB-A85J-01 8 144886891 144886891 G A SCRIB Silent p.G952G 0.32 TCGA-EB-A85J-01 8 1616637 1616637 C T DLGAP2 Silent p.S571S 0.16 TCGA-EB-A85J-01 8 24349467 24349467 C T ADAM7 Missense_Mutation p.P470S 0.18 tolerated(0.05) possibly_damaging(0.71) TCGA-EB-A85J-01 8 27097399 27097399 C T STMN4 Intron 0.20 TCGA-EB-A85J-01 8 27321398 27321398 T G CHRNA2 Missense_Mutation p.T188P 0.20 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 8 3081296 3081296 C T CSMD1 Missense_Mutation p.R1480K 0.18 benign(0.026) TCGA-EB-A85J-01 8 39604120 39604120 G A ADAM2 Missense_Mutation p.S682F 0.22 deleterious(0.01) possibly_damaging(0.707) TCGA-EB-A85J-01 8 41164328 41164328 G A SFRP1 Intron 0.16 TCGA-EB-A85J-01 8 41561907 41561907 G A ANK1 Silent p.V760V 0.18 TCGA-EB-A85J-01 8 42162746 42162746 C T IKBKB Missense_Mutation p.R144W 0.17 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 8 42178270 42178270 C T IKBKB Silent p.L532L 0.17 TCGA-EB-A85J-01 8 53044521 53044521 C T ST18 Missense_Mutation p.R888Q 0.26 deleterious(0) probably_damaging(0.989) TCGA-EB-A85J-01 8 55538745 55538745 C T RP1 Missense_Mutation p.S768F 0.18 tolerated(0.48) benign(0.002) TCGA-EB-A85J-01 8 62212666 62212666 C T CLVS1 Silent p.L94L 0.05 TCGA-EB-A85J-01 8 69028124 69028124 G A PREX2 Missense_Mutation p.E1095K 0.13 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EB-A85J-01 8 69129915 69129915 C T PREX2 Missense_Mutation p.R1557C 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-EB-A85J-01 8 73480405 73480405 G A KCNB2 Missense_Mutation p.E146K 0.16 deleterious(0) probably_damaging(0.985) TCGA-EB-A85J-01 8 73850422 73850422 G A KCNB2 3'UTR 0.32 TCGA-EB-A85J-01 8 79710318 79710318 C T IL7 Missense_Mutation p.D46N 0.15 tolerated(1) probably_damaging(0.962) TCGA-EB-A85J-01 8 8175653 8175653 G A SGK223 3'UTR 0.13 TCGA-EB-A85J-01 8 87235314 87235314 C T SLC7A13 Missense_Mutation p.R235K 0.50 tolerated(0.55) benign(0.063) TCGA-EB-A85J-01 8 88249279 88249279 G A CNBD1 Nonsense_Mutation p.W237* 0.21 TCGA-EB-A85J-01 8 92330598 92330598 G A SLC26A7 Missense_Mutation p.G211E 0.33 deleterious(0.04) possibly_damaging(0.705) TCGA-EB-A85J-01 8 94929193 94929193 G A PDP1 5'UTR 0.43 TCGA-EB-A85J-01 9 100124166 100124166 C T CCDC180 Silent p.I1258I 0.22 TCGA-EB-A85J-01 9 101787157 101787157 G A COL15A1 Missense_Mutation p.G619D 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-EB-A85J-01 9 108366727 108366727 C T FKTN Missense_Mutation p.P201S 0.19 tolerated(0.17) benign(0.064) TCGA-EB-A85J-01 9 109691019 109691019 C T ZNF462 Missense_Mutation p.S1609F 0.21 possibly_damaging(0.726) TCGA-EB-A85J-01 9 110248028 110248028 G A KLF4 3'UTR 0.19 TCGA-EB-A85J-01 9 113547826 113547826 C T MUSK Missense_Mutation p.L536F 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A85J-01 9 115422420 115422420 C T KIAA1958 3'UTR 0.42 TCGA-EB-A85J-01 9 119139868 119139868 C T PAPPA Missense_Mutation p.T1540I 0.33 deleterious(0) possibly_damaging(0.507) TCGA-EB-A85J-01 9 120476488 120476488 G A TLR4 Silent p.K694K 0.39 TCGA-EB-A85J-01 9 127302440 127302440 G A NR6A1 Silent p.I156I 0.22 TCGA-EB-A85J-01 9 135919202 135919202 C T GTF3C5 Missense_Mutation p.P154L 0.24 tolerated(0.29) benign(0.091) TCGA-EB-A85J-01 9 136518059 136518059 C T DBH Intron 0.23 TCGA-EB-A85J-01 9 137710861 137710861 C T COL5A1 Missense_Mutation p.P1470S 0.16 benign(0.126) TCGA-EB-A85J-01 9 139889649 139889649 G A CLIC3 Missense_Mutation p.A122V 0.21 tolerated(0.21) benign(0.063) TCGA-EB-A85J-01 9 23762156 23762156 G A ELAVL2 Missense_Mutation p.S26L 0.25 tolerated_low_confidence(0.08) benign(0.018) TCGA-EB-A85J-01 9 35044091 35044091 G A C9orf131 Missense_Mutation p.G489R 0.34 tolerated(0.72) possibly_damaging(0.877) TCGA-EB-A85J-01 9 40772297 40772297 G A ZNF658 Missense_Mutation p.P993L 0.06 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 9 71532628 71532628 G A PIP5K1B Silent p.Q312Q 0.23 TCGA-EB-A85J-01 9 71687740 71687740 A C FXN 3'UTR 0.31 TCGA-EB-A85J-01 9 78773966 78773966 C T PCSK5 Missense_Mutation p.R500C 0.27 deleterious(0) possibly_damaging(0.582) TCGA-EB-A85J-01 9 79118213 79118213 C T GCNT1 Nonsense_Mutation p.Q306* 0.26 TCGA-EB-A85J-01 9 79898376 79898376 T C VPS13A Missense_Mutation p.I1075T 0.21 deleterious(0) probably_damaging(0.999) TCGA-EB-A85J-01 9 88611316 88611316 C T NAA35 Missense_Mutation p.H294Y 0.06 tolerated(0.91) benign(0.002) TCGA-EB-A85J-01 9 90500243 90500243 C T SPATA31E1 Silent p.L281L 0.28 TCGA-EB-A85J-01 X 105449921 105449921 G A MUM1L1 Missense_Mutation p.D166N 0.16 tolerated(0.59) benign(0.037) TCGA-EB-A85J-01 X 107867521 107867521 G A COL4A5 Silent p.G991G 0.42 TCGA-EB-A85J-01 X 117043782 117043782 C T KLHL13 Missense_Mutation p.R286Q 0.40 deleterious(0) probably_damaging(0.989) TCGA-EB-A85J-01 X 117106771 117106771 C T KLHL13 Intron 0.33 TCGA-EB-A85J-01 X 151453191 151453191 C T GABRA3 Silent p.V93V 0.33 TCGA-EB-A85J-01 X 24229360 24229360 T C ZFX Missense_Mutation p.F762S 0.45 deleterious(0) probably_damaging(0.998) TCGA-EB-A85J-01 X 34148281 34148281 C T FAM47A Nonsense_Mutation p.W705* 0.38 TCGA-EB-A85J-01 X 34148969 34148969 G A FAM47A Missense_Mutation p.S476F 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A85J-01 X 37981353 37981353 G A SYTL5 Missense_Mutation p.G598R 0.40 deleterious(0.04) possibly_damaging(0.56) TCGA-EB-A85J-01 X 50111937 50111937 G A DGKK RNA 0.26 TCGA-EB-A85J-01 X 52842237 52842237 G A XAGE5 Missense_Mutation p.R49K 0.33 tolerated(1) benign(0.13) TCGA-EB-A85J-01 X 71886128 71886128 A C PHKA1 Missense_Mutation p.L246R 0.31 deleterious(0) probably_damaging(1) TCGA-EB-A85J-01 X 73964089 73964089 G A KIAA2022 Silent p.L101L 0.35 TCGA-EB-A85J-01 X 75004584 75004584 C T MAGEE2 Missense_Mutation p.M101I 0.46 tolerated(0.37) probably_damaging(0.954) TCGA-EB-A85J-01 X 7811553 7811553 C A VCX Silent p.A39A 0.16 TCGA-EB-A85J-01 X 84525770 84525770 C T ZNF711 Missense_Mutation p.H408Y 0.29 tolerated(0.29) benign(0.103) TCGA-EB-A85J-01 X 86873069 86873069 C T KLHL4 Nonsense_Mutation p.R288* 0.21 TCGA-EB-A97M-01 10 122660585 122660585 C T WDR11 Nonsense_Mutation p.Q888* 0.81 TCGA-EB-A97M-01 10 124377721 124377721 G A DMBT1 Missense_Mutation p.G1565S 0.69 deleterious(0.02) probably_damaging(1) TCGA-EB-A97M-01 10 126523501 126523501 C T FAM175B Silent p.P403P 0.81 TCGA-EB-A97M-01 10 24813542 24813542 C T KIAA1217 Missense_Mutation p.S916F 0.61 deleterious(0.01) benign(0.16) TCGA-EB-A97M-01 10 3150968 3150968 G A PFKP Missense_Mutation p.A316T 0.76 deleterious(0) probably_damaging(0.993) TCGA-EB-A97M-01 10 71103733 71103733 C T HK1 Missense_Mutation p.P76S 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A97M-01 10 93258708 93258708 A T HECTD2 Missense_Mutation p.N612I 0.73 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 10 95072892 95072892 G A MYOF Missense_Mutation p.P1925L 0.70 deleterious(0.05) benign(0.003) TCGA-EB-A97M-01 10 95072893 95072893 G T MYOF Missense_Mutation p.P1925T 0.70 tolerated(0.11) benign(0.005) TCGA-EB-A97M-01 11 1010983 1010983 C T AP2A2 3'UTR 0.58 TCGA-EB-A97M-01 11 119050408 119050408 C T NLRX1 Missense_Mutation p.P560S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EB-A97M-01 11 123909515 123909515 G A OR10G7 Missense_Mutation p.S65F 0.18 deleterious(0) benign(0.216) TCGA-EB-A97M-01 11 124266392 124266392 G A OR8B3 Missense_Mutation p.P286S 0.28 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-EB-A97M-01 11 124489288 124489288 G A PANX3 Silent p.R212R 0.18 TCGA-EB-A97M-01 11 125851060 125851060 G A CDON Missense_Mutation p.P1054S 0.49 tolerated(0.32) benign(0.039) TCGA-EB-A97M-01 11 130131516 130131516 G A ZBTB44 Missense_Mutation p.L85F 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A97M-01 11 30033305 30033305 C T KCNA4 Silent p.R307R 0.16 TCGA-EB-A97M-01 11 3427796 3427796 G A TSSC2 RNA 0.16 TCGA-EB-A97M-01 11 3427797 3427797 G A TSSC2 RNA 0.16 TCGA-EB-A97M-01 11 4567095 4567095 C T OR52M1 Silent p.F225F 0.45 TCGA-EB-A97M-01 11 4903802 4903802 C T OR51T1 Missense_Mutation p.R252C 0.38 tolerated(0.05) probably_damaging(0.972) TCGA-EB-A97M-01 11 5344886 5344886 G A OR51B2 Silent p.F214F 0.59 TCGA-EB-A97M-01 11 56468463 56468463 C T OR9G1 Silent p.F200F 0.33 TCGA-EB-A97M-01 11 57081012 57081012 G A TNKS1BP1 Missense_Mutation p.P384S 0.12 deleterious(0.04) benign(0.039) TCGA-EB-A97M-01 11 57373996 57373996 C T SERPING1 Silent p.F335F 0.33 TCGA-EB-A97M-01 11 64415748 64415748 C T NRXN2 Missense_Mutation p.D1116N 0.53 tolerated(0.39) probably_damaging(0.997) TCGA-EB-A97M-01 11 64978799 64978799 C T CAPN1 3'UTR 0.29 TCGA-EB-A97M-01 11 65308360 65308360 C T LTBP3 Missense_Mutation p.G987S 0.69 tolerated(0.22) possibly_damaging(0.874) TCGA-EB-A97M-01 11 67265718 67265718 C A PITPNM1 Silent p.L520L 0.41 TCGA-EB-A97M-01 11 67925101 67925101 G A SUV420H1 3'UTR 0.51 TCGA-EB-A97M-01 11 71726478 71726478 C T NUMA1 Missense_Mutation p.E691K 0.53 probably_damaging(0.998) TCGA-EB-A97M-01 11 76507568 76507568 C T TSKU Missense_Mutation p.P303L 0.26 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 11 93796705 93796705 G A HEPHL1 Silent p.R149R 0.29 TCGA-EB-A97M-01 11 9459631 9459631 C T IPO7 Missense_Mutation p.H832Y 0.54 deleterious(0) probably_damaging(0.958) TCGA-EB-A97M-01 12 102056310 102056310 C T MYBPC1 Missense_Mutation p.P711L 0.33 deleterious(0) benign(0.434) TCGA-EB-A97M-01 12 10539565 10539565 C T KLRK1 Missense_Mutation p.D29N 0.23 tolerated(0.55) benign(0.005) TCGA-EB-A97M-01 12 112237736 112237736 G C ALDH2 Silent p.L425L 0.55 TCGA-EB-A97M-01 12 113435528 113435528 G A OAS2 Silent p.R277R 0.39 TCGA-EB-A97M-01 12 119631589 119631589 C T HSPB8 Missense_Mutation p.P173S 0.44 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 12 124265661 124265661 G A DNAH10 Missense_Mutation p.R158K 0.47 benign(0.001) TCGA-EB-A97M-01 12 124320057 124320057 C T DNAH10 Silent p.I1510I 0.44 TCGA-EB-A97M-01 12 130927162 130927162 G A RIMBP2 Silent p.F228F 0.36 TCGA-EB-A97M-01 12 14792850 14792850 C T GUCY2C Missense_Mutation p.M701I 0.39 tolerated(0.28) benign(0.003) TCGA-EB-A97M-01 12 20896268 20896268 C T SLCO1C1 Missense_Mutation p.A588V 0.32 deleterious(0) probably_damaging(0.998) TCGA-EB-A97M-01 12 21036487 21036487 T C SLCO1B3 Missense_Mutation p.S545P 0.09 deleterious(0.05) possibly_damaging(0.673) TCGA-EB-A97M-01 12 49315113 49315113 G A CCDC65 Missense_Mutation p.E448K 0.35 tolerated(0.09) benign(0.278) TCGA-EB-A97M-01 12 53225222 53225222 G A KRT79 Silent p.N222N 0.44 TCGA-EB-A97M-01 12 57112652 57112652 G A NACA Intron 0.28 TCGA-EB-A97M-01 12 57881788 57881788 C T MARS 5'UTR 0.57 TCGA-EB-A97M-01 12 6562636 6562636 G A TAPBPL Missense_Mutation p.A107T 0.24 deleterious(0.01) probably_damaging(1) TCGA-EB-A97M-01 12 71002988 71002988 G A PTPRB Silent p.T280T 0.41 TCGA-EB-A97M-01 12 75436946 75436946 G A KCNC2 Missense_Mutation p.S619L 0.45 deleterious_low_confidence(0) benign(0.084) TCGA-EB-A97M-01 12 7649555 7649555 C T CD163 Missense_Mutation p.R318Q 0.41 tolerated(0.44) probably_damaging(0.934) TCGA-EB-A97M-01 12 7843093 7843093 G A GDF3 Missense_Mutation p.T159I 0.44 tolerated(0.08) benign(0.035) TCGA-EB-A97M-01 12 79685818 79685818 T A SYT1 Missense_Mutation p.L128M 0.45 tolerated(0.24) benign(0.065) TCGA-EB-A97M-01 12 9004392 9004392 G A A2ML1 Silent p.K749K 0.45 TCGA-EB-A97M-01 12 95660405 95660406 CA T VEZT Frame_Shift_Del p.T236Ifs*31 0.23 TCGA-EB-A97M-01 13 115089890 115089890 C T CHAMP1 Silent p.V191V 0.36 TCGA-EB-A97M-01 13 25831435 25831435 C T MTMR6 Missense_Mutation p.V332M 0.37 deleterious(0) probably_damaging(0.997) TCGA-EB-A97M-01 13 38248445 38248445 C T TRPC4 Missense_Mutation p.D432N 0.43 tolerated(0.29) probably_damaging(0.981) TCGA-EB-A97M-01 13 39271871 39271871 G A FREM2 Missense_Mutation p.R1737K 0.35 tolerated(0.7) benign(0.002) TCGA-EB-A97M-01 13 52549131 52549131 G A ATP7B Silent p.S75S 0.38 TCGA-EB-A97M-01 13 58240897 58240897 C T PCDH17 Silent p.C909C 0.39 TCGA-EB-A97M-01 13 75930370 75930370 A C TBC1D4 Missense_Mutation p.D396E 0.34 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 14 101349277 101349277 C T RTL1 Missense_Mutation p.E617K 0.47 tolerated(0.32) benign(0.016) TCGA-EB-A97M-01 14 20019806 20019806 C T POTEM Missense_Mutation p.D139N 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-EB-A97M-01 14 21052136 21052136 G A RNASE11 Silent p.F166F 0.38 TCGA-EB-A97M-01 14 38723952 38723952 G A CLEC14A Missense_Mutation p.H426Y 0.54 deleterious(0) possibly_damaging(0.635) TCGA-EB-A97M-01 14 47426841 47426841 G A MDGA2 Missense_Mutation p.P609S 0.42 deleterious(0.01) probably_damaging(0.962) TCGA-EB-A97M-01 14 55429864 55429864 G A WDHD1 Silent p.F779F 0.39 TCGA-EB-A97M-01 14 70517760 70517760 C T SLC8A3 Missense_Mutation p.R699K 0.32 tolerated(0.32) benign(0.222) TCGA-EB-A97M-01 14 76964716 76964716 C T ESRRB Missense_Mutation p.A406V 0.36 tolerated(0.31) benign(0.188) TCGA-EB-A97M-01 15 26026348 26026348 G A ATP10A Nonsense_Mutation p.R158* 0.50 TCGA-EB-A97M-01 15 26026349 26026349 G A ATP10A Silent p.N157N 0.50 TCGA-EB-A97M-01 15 42041652 42041652 C T MGA Silent p.L1949L 0.48 TCGA-EB-A97M-01 15 42115371 42115371 C T MAPKBP1 Silent p.P1189P 0.41 TCGA-EB-A97M-01 15 42166120 42166120 C T SPTBN5 Missense_Mutation p.E1605K 0.50 probably_damaging(0.962) TCGA-EB-A97M-01 15 51350112 51350112 C T TNFAIP8L3 Missense_Mutation p.G282E 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 15 51507285 51507285 C T CYP19A1 Missense_Mutation p.E335K 0.29 deleterious(0) possibly_damaging(0.905) TCGA-EB-A97M-01 15 51535153 51535153 G A CYP19A1 Intron 0.30 TCGA-EB-A97M-01 15 58467140 58467140 G A AQP9 Missense_Mutation p.G134R 0.42 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 15 62967475 62967475 C T TLN2 Silent p.L304L 0.42 TCGA-EB-A97M-01 15 73581565 73581565 C T NEO1 Missense_Mutation p.S1243F 0.28 deleterious(0) probably_damaging(0.968) TCGA-EB-A97M-01 15 74364648 74364648 C T GOLGA6A Missense_Mutation p.D502N 0.13 deleterious(0.03) benign(0.042) TCGA-EB-A97M-01 15 78819833 78819833 C T HYKK Nonsense_Mutation p.R197* 0.34 TCGA-EB-A97M-01 15 79760781 79760781 C T KIAA1024 3'UTR 0.56 TCGA-EB-A97M-01 15 81221461 81221461 G A KIAA1199 Missense_Mutation p.R853K 0.40 tolerated(1) benign(0.101) TCGA-EB-A97M-01 15 81571953 81571953 C T IL16 Missense_Mutation p.P307S 0.30 tolerated(0.85) benign(0.035) TCGA-EB-A97M-01 15 90348336 90348336 C T ANPEP Silent p.V290V 0.43 TCGA-EB-A97M-01 15 93016302 93016302 G A C15orf32 Nonsense_Mutation p.W165* 0.43 TCGA-EB-A97M-01 16 14755798 14755798 C T BFAR Missense_Mutation p.S278F 0.42 tolerated(0.5) possibly_damaging(0.742) TCGA-EB-A97M-01 16 19451758 19451758 G A TMC5 Missense_Mutation p.R133Q 0.42 tolerated_low_confidence(0.31) benign(0.005) TCGA-EB-A97M-01 16 24573337 24573337 C T RBBP6 Missense_Mutation p.P382S 0.40 tolerated_low_confidence(0.07) benign(0.155) TCGA-EB-A97M-01 16 24902256 24902256 G A SLC5A11 Missense_Mutation p.R244Q 0.39 tolerated(0.29) benign(0.273) TCGA-EB-A97M-01 16 30387185 30387185 C T MYLPF Silent p.S16S 0.33 TCGA-EB-A97M-01 16 46781631 46781631 C T MYLK3 Missense_Mutation p.E159K 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-EB-A97M-01 16 56377751 56377751 G A GNAO1 Silent p.E318E 0.37 TCGA-EB-A97M-01 16 57397532 57397532 C T CCL22 3'UTR 0.43 TCGA-EB-A97M-01 16 57596324 57596324 G A GPR114 Missense_Mutation p.M31I 0.37 deleterious(0.05) benign(0.043) TCGA-EB-A97M-01 16 58757778 58757778 G A GOT2 Missense_Mutation p.P40S 0.13 deleterious(0) possibly_damaging(0.771) TCGA-EB-A97M-01 16 66420925 66420925 C T CDH5 Missense_Mutation p.H142Y 0.37 tolerated(0.43) benign(0.005) TCGA-EB-A97M-01 16 67229730 67229730 G C E2F4 Missense_Mutation p.S285T 0.21 tolerated(0.18) benign(0.029) TCGA-EB-A97M-01 16 70303576 70303576 G A AARS Missense_Mutation p.R303W 0.38 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 16 716290 716290 C T WDR90 Silent p.F1560F 0.42 TCGA-EB-A97M-01 16 71898903 71898903 G A ZNF821 Missense_Mutation p.S72F 0.36 tolerated(0.06) probably_damaging(0.996) TCGA-EB-A97M-01 16 72094419 72094419 G A HP Nonsense_Mutation p.W284* 0.36 TCGA-EB-A97M-01 16 74455189 74455189 G A CLEC18B 5'UTR 0.21 TCGA-EB-A97M-01 16 88008773 88008773 C T BANP Silent p.L18L 0.30 TCGA-EB-A97M-01 17 10302161 10302161 G A MYH8 Missense_Mutation p.S1302F 0.35 deleterious(0.01) benign(0.028) TCGA-EB-A97M-01 17 10322317 10322317 G A MYH8 Missense_Mutation p.P81S 0.33 tolerated(0.26) benign(0.002) TCGA-EB-A97M-01 17 10364348 10364348 G A MYH4 Silent p.F344F 0.48 TCGA-EB-A97M-01 17 10448697 10448697 G A MYH2 Silent p.S157S 0.41 TCGA-EB-A97M-01 17 10543922 10543922 G A MYH3 Silent p.S749S 0.38 TCGA-EB-A97M-01 17 15341079 15341079 C T TVP23C-CDRT4 3'UTR 0.33 TCGA-EB-A97M-01 17 25932636 25932636 C T KSR1 Silent p.I482I 0.32 TCGA-EB-A97M-01 17 25958225 25958225 C G LGALS9 5'UTR 0.52 TCGA-EB-A97M-01 17 3772903 3772903 G A CAMKK1 Missense_Mutation p.P445S 0.36 tolerated(0.07) possibly_damaging(0.852) TCGA-EB-A97M-01 17 3840751 3840751 G A ATP2A3 Silent p.F760F 0.41 TCGA-EB-A97M-01 17 38421239 38421239 G A WIPF2 Missense_Mutation p.E271K 0.46 deleterious(0.05) benign(0.202) TCGA-EB-A97M-01 17 40327600 40327600 G A KCNH4 Silent p.T328T 0.37 TCGA-EB-A97M-01 17 41152101 41152101 A G RPL27 Missense_Mutation p.N78S 0.39 tolerated(0.24) benign(0.036) TCGA-EB-A97M-01 17 44626219 44626219 C T LRRC37A2 Silent p.T1238T 0.22 TCGA-EB-A97M-01 17 45915728 45915728 G A SCRN2 Missense_Mutation p.R343W 0.52 deleterious(0) possibly_damaging(0.776) TCGA-EB-A97M-01 17 56383220 56383220 G A BZRAP1 Missense_Mutation p.S1744L 0.32 tolerated(0.35) benign(0.001) TCGA-EB-A97M-01 17 62758575 62758575 T A hsa-mir-6080 RNA 0.49 TCGA-EB-A97M-01 17 7249602 7249602 G A ACAP1 Silent p.Q298Q 0.39 TCGA-EB-A97M-01 17 72613262 72613262 G A CD300E Missense_Mutation p.S128F 0.41 tolerated(0.78) benign(0.007) TCGA-EB-A97M-01 17 7369546 7369546 G A ZBTB4 Missense_Mutation p.P192L 0.31 possibly_damaging(0.908) TCGA-EB-A97M-01 17 7404329 7404329 C T POLR2A Missense_Mutation p.S651F 0.35 probably_damaging(0.992) TCGA-EB-A97M-01 17 76503817 76503817 G A DNAH17 Missense_Mutation p.T1432I 0.41 benign(0.002) TCGA-EB-A97M-01 17 77040029 77040029 C T C1QTNF1 Intron 0.32 TCGA-EB-A97M-01 17 78936305 78936305 C T RPTOR Missense_Mutation p.S1246L 0.38 deleterious(0.01) benign(0.002) TCGA-EB-A97M-01 17 79077429 79077429 C T BAIAP2 Missense_Mutation p.A257V 0.45 tolerated(0.48) benign(0.005) TCGA-EB-A97M-01 17 9615387 9615387 C T USP43 Missense_Mutation p.P758L 0.48 deleterious(0.02) benign(0.015) TCGA-EB-A97M-01 18 12674688 12674688 G C CEP76 Missense_Mutation p.S563C 0.19 deleterious(0.01) possibly_damaging(0.605) TCGA-EB-A97M-01 18 20577648 20577648 C T RBBP8 Silent p.T698T 0.42 TCGA-EB-A97M-01 18 21529843 21529843 G A LAMA3 Missense_Mutation p.E3156K 0.42 possibly_damaging(0.715) TCGA-EB-A97M-01 18 28662353 28662353 C T DSC2 Missense_Mutation p.E372K 0.42 deleterious(0.02) probably_damaging(0.967) TCGA-EB-A97M-01 18 28710796 28710796 G A DSC1 Intron 0.28 TCGA-EB-A97M-01 18 28737418 28737418 C T DSC1 Silent p.R89R 0.48 TCGA-EB-A97M-01 18 29121181 29121181 C G DSG2 Missense_Mutation p.C635W 0.21 deleterious(0.02) benign(0.086) TCGA-EB-A97M-01 18 29703537 29703537 G C RNF138 Missense_Mutation p.S150T 0.38 tolerated(0.42) benign(0.03) TCGA-EB-A97M-01 18 31318881 31318881 A C ASXL3 Missense_Mutation p.M505L 0.55 probably_damaging(0.963) TCGA-EB-A97M-01 18 32919811 32919811 G A ZNF24 Missense_Mutation p.H184Y 0.41 tolerated(0.3) benign(0.152) TCGA-EB-A97M-01 18 34850833 34850833 G A CELF4 Missense_Mutation p.P333S 0.48 tolerated(0.21) probably_damaging(0.999) TCGA-EB-A97M-01 18 44030261 44030261 C T RNF165 Silent p.V206V 0.32 TCGA-EB-A97M-01 18 44036533 44036533 C T RNF165 Silent p.L325L 0.38 TCGA-EB-A97M-01 18 57106791 57106791 C T CCBE1 Missense_Mutation p.G312E 0.42 deleterious(0.03) probably_damaging(1) TCGA-EB-A97M-01 18 61234130 61234130 G A SERPINB12 Silent p.S368S 0.36 TCGA-EB-A97M-01 19 10131441 10131441 G A RDH8 Missense_Mutation p.E187K 0.30 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 19 1127756 1127756 G A SBNO2 Silent p.S96S 0.39 TCGA-EB-A97M-01 19 13007762 13007762 C T GCDH Silent p.I297I 0.34 TCGA-EB-A97M-01 19 13365963 13365963 G A CACNA1A Silent p.F1567F 0.24 TCGA-EB-A97M-01 19 15917833 15917833 C T OR10H1 3'UTR 0.37 TCGA-EB-A97M-01 19 17001153 17001153 G A F2RL3 Silent p.V293V 0.36 TCGA-EB-A97M-01 19 36219766 36219767 - A KMT2B Frame_Shift_Ins p.P1556Afs*122 0.23 TCGA-EB-A97M-01 19 39191339 39191339 C T ACTN4 Silent p.L88L 0.50 TCGA-EB-A97M-01 19 39688754 39688754 G A NCCRP1 Silent p.L133L 0.37 TCGA-EB-A97M-01 19 39688755 39688755 G A NCCRP1 Missense_Mutation p.G134S 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A97M-01 19 4171659 4171659 C T CREB3L3 Missense_Mutation p.S360F 0.31 deleterious(0) probably_damaging(0.997) TCGA-EB-A97M-01 19 42791010 42791010 C T CIC Missense_Mutation p.S52F 0.43 probably_damaging(0.953) TCGA-EB-A97M-01 19 43689216 43689216 C T PSG5 Missense_Mutation p.D50N 0.43 tolerated(0.1) probably_damaging(0.975) TCGA-EB-A97M-01 19 44377153 44377153 G A ZNF404 Missense_Mutation p.H405Y 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-EB-A97M-01 19 4517592 4517592 G A PLIN4 Missense_Mutation p.A42V 0.44 tolerated(0.31) benign(0.057) TCGA-EB-A97M-01 19 45317922 45317922 C A BCAM Missense_Mutation p.T328N 0.42 tolerated(0.49) benign(0.003) TCGA-EB-A97M-01 19 4817429 4817429 G A TICAM1 Missense_Mutation p.P321S 0.47 tolerated(0.26) benign(0.001) TCGA-EB-A97M-01 19 50412032 50412032 C G NUP62 Missense_Mutation p.E345Q 0.18 tolerated(0.05) benign(0.297) TCGA-EB-A97M-01 19 50983408 50983408 C T EMC10 Missense_Mutation p.P113L 0.33 tolerated(0.08) probably_damaging(0.971) TCGA-EB-A97M-01 19 51359596 51359596 C T KLK3 Silent p.V49V 0.40 TCGA-EB-A97M-01 19 52004741 52004741 G A SIGLEC12 Nonsense_Mutation p.R83* 0.36 TCGA-EB-A97M-01 19 53473290 53473290 C T ZNF702P RNA 0.40 TCGA-EB-A97M-01 19 53652047 53652047 T A ZNF347 Missense_Mutation p.D54V 0.17 deleterious(0.03) benign(0.038) TCGA-EB-A97M-01 19 54744985 54744985 G A LILRA6 Missense_Mutation p.S226F 0.18 deleterious(0.03) probably_damaging(0.987) TCGA-EB-A97M-01 19 57743955 57743955 C T AURKC Silent p.R114R 0.38 TCGA-EB-A97M-01 19 57743956 57743956 C T AURKC Missense_Mutation p.R115W 0.39 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 19 6903936 6903936 C T EMR1 Silent p.F259F 0.42 TCGA-EB-A97M-01 19 8651135 8651135 C T ADAMTS10 Missense_Mutation p.G844D 0.46 deleterious(0) possibly_damaging(0.884) TCGA-EB-A97M-01 19 8807851 8807851 C T ACTL9 Missense_Mutation p.E401K 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-EB-A97M-01 19 9083679 9083679 G A MUC16 Silent p.I2712I 0.38 TCGA-EB-A97M-01 19 9204106 9204106 C T OR1M1 Silent p.F62F 0.49 TCGA-EB-A97M-01 1 114397111 114397111 C T PTPN22 Nonsense_Mutation p.W244* 0.21 TCGA-EB-A97M-01 1 119466167 119466167 G A TBX15 Silent p.F145F 0.34 TCGA-EB-A97M-01 1 119934870 119934870 C T HAO2 Silent p.I303I 0.49 TCGA-EB-A97M-01 1 120846064 120846064 C T FAM72B Silent p.H100H 0.25 TCGA-EB-A97M-01 1 12321091 12321091 C T VPS13D Silent p.L433L 0.57 TCGA-EB-A97M-01 1 12516147 12516147 G A VPS13D Missense_Mutation p.G4143S 0.19 probably_damaging(0.909) TCGA-EB-A97M-01 1 1273984 1273984 G A DVL1 Silent p.V394V 0.22 TCGA-EB-A97M-01 1 144873879 144873879 G A PDE4DIP Missense_Mutation p.S1693L 0.17 tolerated(0.11) benign(0.096) TCGA-EB-A97M-01 1 149877265 149877265 G A SV2A Intron 0.21 TCGA-EB-A97M-01 1 151006452 151006452 C T PRUNE Silent p.I368I 0.16 TCGA-EB-A97M-01 1 152326231 152326231 C T FLG2 Missense_Mutation p.R1344K 0.11 benign(0.001) TCGA-EB-A97M-01 1 166039691 166039691 C T FAM78B Nonsense_Mutation p.W191* 0.16 TCGA-EB-A97M-01 1 167666751 167666751 G A RCSD1 Missense_Mutation p.G297E 0.93 tolerated(0.77) benign(0.133) TCGA-EB-A97M-01 1 173878855 173878855 C T SERPINC1 Missense_Mutation p.E330K 0.70 tolerated(0.69) benign(0.043) TCGA-EB-A97M-01 1 174926633 174926633 C T RABGAP1L Nonsense_Mutation p.Q794* 0.71 TCGA-EB-A97M-01 1 176905316 176905316 C T ASTN1 Intron 0.25 TCGA-EB-A97M-01 1 182617405 182617405 G A RGS8 Missense_Mutation p.T94M 0.30 deleterious(0) probably_damaging(0.997) TCGA-EB-A97M-01 1 18703373 18703373 G A IGSF21 Missense_Mutation p.G394E 0.24 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 1 190423887 190423887 T C BRINP3 Missense_Mutation p.D45G 0.19 tolerated(0.17) probably_damaging(0.977) TCGA-EB-A97M-01 1 20005081 20005081 G A HTR6 Missense_Mutation p.G246R 0.58 tolerated(0.13) benign(0.021) TCGA-EB-A97M-01 1 230846212 230846212 G A AGT Missense_Mutation p.H129Y 0.62 deleterious(0.02) benign(0.038) TCGA-EB-A97M-01 1 230846213 230846213 G A AGT Silent p.V128V 0.62 TCGA-EB-A97M-01 1 235827302 235827302 G A LYST Missense_Mutation p.S3750L 0.52 tolerated(0.23) benign(0.062) TCGA-EB-A97M-01 1 248308899 248308899 C T OR2M5 Silent p.I150I 0.34 TCGA-EB-A97M-01 1 248436694 248436694 C T OR2T33 Silent p.R141R 0.17 TCGA-EB-A97M-01 1 26506964 26506964 G A CNKSR1 Missense_Mutation p.D25N 0.55 tolerated(0.06) possibly_damaging(0.886) TCGA-EB-A97M-01 1 28786768 28786768 T G PHACTR4 Missense_Mutation p.V89G 0.28 deleterious(0) possibly_damaging(0.76) TCGA-EB-A97M-01 1 3638638 3638638 C T TP73 Silent p.I161I 0.37 TCGA-EB-A97M-01 1 36439031 36439031 C T AGO3 Silent p.L193L 0.21 TCGA-EB-A97M-01 1 3809530 3809530 A G C1orf174 Silent p.L16L 0.48 TCGA-EB-A97M-01 1 43296182 43296182 C T ERMAP Silent p.L21L 0.67 TCGA-EB-A97M-01 1 43296183 43296183 C T ERMAP Missense_Mutation p.R22W 0.67 deleterious_low_confidence(0) benign(0.153) TCGA-EB-A97M-01 1 44474059 44474059 G A SLC6A9 Missense_Mutation p.L259F 0.57 tolerated(0.58) benign(0.014) TCGA-EB-A97M-01 1 46739339 46739339 C T RAD54L Silent p.S510S 0.40 TCGA-EB-A97M-01 1 47279921 47279921 G A CYP4B1 Silent p.E272E 0.23 TCGA-EB-A97M-01 1 47398371 47398371 C T CYP4A11 Intron 0.57 TCGA-EB-A97M-01 1 53072582 53072582 G A GPX7 Missense_Mutation p.G122D 0.29 deleterious(0.03) probably_damaging(0.958) TCGA-EB-A97M-01 1 55144996 55144996 G A MROH7 Missense_Mutation p.G704R 0.54 deleterious(0) probably_damaging(0.988) TCGA-EB-A97M-01 1 6191699 6191699 C T CHD5 Missense_Mutation p.R1085K 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-EB-A97M-01 1 70446074 70446074 G A LRRC7 Missense_Mutation p.D204N 0.63 tolerated(0.06) benign(0.001) TCGA-EB-A97M-01 1 74506967 74506967 G A LRRIQ3 Silent p.L550L 0.27 TCGA-EB-A97M-01 1 86252082 86252082 C T COL24A1 Silent p.K1338K 0.21 TCGA-EB-A97M-01 1 89834147 89834147 C T GBP6 Silent p.L13L 0.14 TCGA-EB-A97M-01 20 31577456 31577456 C T SUN5 Missense_Mutation p.E195K 0.52 tolerated(0.07) probably_damaging(0.998) TCGA-EB-A97M-01 20 37356600 37356600 T G SLC32A1 Missense_Mutation p.F299C 0.34 deleterious(0) probably_damaging(0.962) TCGA-EB-A97M-01 20 44190795 44190795 G A WFDC8 Silent p.S30S 0.33 TCGA-EB-A97M-01 20 45131628 45131628 C T ZNF334 Missense_Mutation p.G117E 0.38 tolerated(0.24) benign(0.003) TCGA-EB-A97M-01 20 47635466 47635466 C T ARFGEF2 Missense_Mutation p.P1519S 0.32 tolerated(0.69) benign(0) TCGA-EB-A97M-01 20 50140522 50140522 G A NFATC2 Silent p.F86F 0.52 TCGA-EB-A97M-01 20 54823910 54823910 C T MC3R Missense_Mutation p.S4L 0.35 deleterious_low_confidence(0) benign(0.242) TCGA-EB-A97M-01 20 55758869 55758869 G A BMP7 Silent p.R289R 0.45 TCGA-EB-A97M-01 20 62046440 62046440 G A KCNQ2 Silent p.P447P 0.29 TCGA-EB-A97M-01 20 62624794 62624794 C T PRPF6 Missense_Mutation p.R132C 0.40 deleterious(0) probably_damaging(0.952) TCGA-EB-A97M-01 21 11039421 11039421 C T BAGE2 RNA 0.06 TCGA-EB-A97M-01 21 31538695 31538695 G C CLDN17 Missense_Mutation p.R81G 0.49 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 21 35144551 35144551 A T ITSN1 Missense_Mutation p.E410V 0.29 deleterious(0.02) unknown(0) TCGA-EB-A97M-01 21 46077862 46077862 C T KRTAP12-3 5'UTR 0.51 TCGA-EB-A97M-01 21 46078070 46078070 G A KRTAP12-3 Silent p.V58V 0.40 TCGA-EB-A97M-01 22 19028601 19028601 G A DGCR2 Missense_Mutation p.H456Y 0.47 deleterious(0) benign(0.063) TCGA-EB-A97M-01 22 24466776 24466776 A T CABIN1 Missense_Mutation p.Y753F 0.38 tolerated(0.51) benign(0.001) TCGA-EB-A97M-01 22 38757489 38757489 A G RP3-449O17.1 RNA 0.38 TCGA-EB-A97M-01 22 42486844 42486844 C T NDUFA6 5'UTR 0.44 TCGA-EB-A97M-01 22 50192280 50192280 G A BRD1 Silent p.L571L 0.36 TCGA-EB-A97M-01 2 102968402 102968402 G C IL1RL1 3'UTR 0.24 TCGA-EB-A97M-01 2 105859281 105859281 C T GPR45 Silent p.I322I 0.44 TCGA-EB-A97M-01 2 108609532 108609532 C T SLC5A7 Missense_Mutation p.P133S 0.39 deleterious(0.01) probably_damaging(0.927) TCGA-EB-A97M-01 2 108863684 108863684 G A SULT1C3 Missense_Mutation p.E12K 0.38 tolerated(0.13) benign(0.133) TCGA-EB-A97M-01 2 121740293 121740293 T C GLI2 Missense_Mutation p.F507S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 2 121740294 121740294 C T GLI2 Silent p.F507F 0.42 TCGA-EB-A97M-01 2 121745807 121745807 G A GLI2 Missense_Mutation p.G773S 0.48 tolerated(1) benign(0.003) TCGA-EB-A97M-01 2 128327441 128327441 C T MYO7B Missense_Mutation p.S183L 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-EB-A97M-01 2 128471248 128471248 G A WDR33 Missense_Mutation p.P1073S 0.44 tolerated_low_confidence(0.33) possibly_damaging(0.857) TCGA-EB-A97M-01 2 128699682 128699682 G A SAP130 Silent p.S1050S 0.39 TCGA-EB-A97M-01 2 132263978 132263978 C T AC093838.4 RNA 0.43 TCGA-EB-A97M-01 2 133541515 133541515 C T NCKAP5 Missense_Mutation p.E957K 0.45 tolerated(0.25) benign(0.033) TCGA-EB-A97M-01 2 135740760 135740760 C T MAP3K19 Intron 0.49 TCGA-EB-A97M-01 2 160303361 160303361 G A BAZ2B Nonsense_Mutation p.R210* 0.45 TCGA-EB-A97M-01 2 162804176 162804176 C T SLC4A10 Missense_Mutation p.S735F 0.38 deleterious(0.01) possibly_damaging(0.882) TCGA-EB-A97M-01 2 168105429 168105429 A C XIRP2 Silent p.A2509A 0.48 TCGA-EB-A97M-01 2 170013914 170013914 C T LRP2 Missense_Mutation p.E3996K 0.43 benign(0) TCGA-EB-A97M-01 2 179440442 179440442 C T TTN Missense_Mutation p.E23473K 0.48 TCGA-EB-A97M-01 2 179584031 179584031 G A TTN Missense_Mutation p.P8029L 0.34 TCGA-EB-A97M-01 2 179640776 179640776 G A TTN Missense_Mutation p.L1939F 0.39 TCGA-EB-A97M-01 2 179640777 179640777 G A TTN Silent p.V1938V 0.40 TCGA-EB-A97M-01 2 185802581 185802581 C T ZNF804A Missense_Mutation p.H820Y 0.41 deleterious(0.05) benign(0.324) TCGA-EB-A97M-01 2 188210982 188210982 C T CALCRL Missense_Mutation p.E439K 0.42 deleterious(0) benign(0.328) TCGA-EB-A97M-01 2 219247726 219247726 C A SLC11A1 Silent p.S17S 0.44 TCGA-EB-A97M-01 2 220334001 220334001 C A SPEG Silent p.A1205A 0.44 TCGA-EB-A97M-01 2 228157926 228157926 G A COL4A3 Missense_Mutation p.G1077D 0.34 unknown(0) TCGA-EB-A97M-01 2 228769688 228769688 G A DAW1 Missense_Mutation p.G231E 0.43 deleterious(0) probably_damaging(0.998) TCGA-EB-A97M-01 2 229890487 229890487 T C PID1 Missense_Mutation p.K203R 0.42 deleterious(0.04) probably_damaging(0.994) TCGA-EB-A97M-01 2 229890526 229890526 G A PID1 Missense_Mutation p.S190F 0.38 deleterious(0) probably_damaging(0.952) TCGA-EB-A97M-01 2 238990408 238990408 C T SCLY Silent p.L189L 0.45 TCGA-EB-A97M-01 2 241713622 241713622 C T KIF1A Missense_Mutation p.D339N 0.41 deleterious(0) probably_damaging(0.993) TCGA-EB-A97M-01 2 242615512 242615512 G A DTYMK 3'UTR 0.52 TCGA-EB-A97M-01 2 46842283 46842283 C G PIGF Missense_Mutation p.K7N 0.18 deleterious(0.01) benign(0.196) TCGA-EB-A97M-01 2 48030589 48030589 G A MSH6 Missense_Mutation p.R1068Q 0.38 tolerated(0.88) benign(0) TCGA-EB-A97M-01 2 48873959 48873959 G A STON1-GTF2A1L Silent p.Q956Q 0.38 TCGA-EB-A97M-01 2 50850606 50850606 G A NRXN1 Missense_Mutation p.S360L 0.47 deleterious(0.01) possibly_damaging(0.7) TCGA-EB-A97M-01 2 64120669 64120669 C T VPS54 Silent p.G943G 0.40 TCGA-EB-A97M-01 2 73829448 73829448 G A ALMS1 Missense_Mutation p.R4083K 0.34 benign(0.064) TCGA-EB-A97M-01 2 73901078 73901078 G A ALMS1P RNA 0.32 TCGA-EB-A97M-01 2 8871746 8871746 C T KIDINS220 Missense_Mutation p.D1474N 0.46 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EB-A97M-01 2 89197297 89197297 C T IGKV5-2 Silent p.F114F 0.44 TCGA-EB-A97M-01 2 89309593 89309593 C T IGKV1-9 Silent p.G79G 0.49 TCGA-EB-A97M-01 2 89339934 89339934 C T IGKV1-12 Silent p.R46R 0.22 TCGA-EB-A97M-01 3 10382023 10382023 A C ATP2B2 Missense_Mutation p.V1047G 0.42 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 3 111426805 111426805 G A PLCXD2 Missense_Mutation p.E66K 0.64 tolerated(0.46) probably_damaging(0.955) TCGA-EB-A97M-01 3 121001165 121001165 G A STXBP5L Silent p.R721R 0.79 TCGA-EB-A97M-01 3 12194991 12194991 G A TIMP4 3'UTR 0.51 TCGA-EB-A97M-01 3 129198698 129198698 G A IFT122 Missense_Mutation p.R525H 0.68 deleterious(0) probably_damaging(0.91) TCGA-EB-A97M-01 3 14745977 14745977 C T C3orf20 Missense_Mutation p.P338S 0.41 tolerated(0.26) benign(0.023) TCGA-EB-A97M-01 3 16250076 16250076 G A GALNT15 Silent p.K326K 0.38 TCGA-EB-A97M-01 3 31871709 31871709 G A OSBPL10 Silent p.S184S 0.36 TCGA-EB-A97M-01 3 33109769 33109769 G A GLB1 Missense_Mutation p.A137V 0.33 tolerated(0.08) benign(0.413) TCGA-EB-A97M-01 3 35724381 35724381 G A ARPP21 Silent p.K57K 0.39 TCGA-EB-A97M-01 3 35833903 35833903 G A ARPP21 Missense_Mutation p.G689R 0.38 deleterious(0.01) benign(0.444) TCGA-EB-A97M-01 3 35833904 35833904 G A ARPP21 Missense_Mutation p.G689E 0.38 deleterious(0.01) benign(0.138) TCGA-EB-A97M-01 3 38597150 38597150 G A SCN5A Silent p.P1513P 0.44 TCGA-EB-A97M-01 3 38913755 38913755 C T SCN11A Missense_Mutation p.E1142K 0.37 tolerated(0.17) benign(0.006) TCGA-EB-A97M-01 3 45127208 45127208 G A CDCP1 Silent p.P811P 0.46 TCGA-EB-A97M-01 3 46492059 46492059 G A LTF Missense_Mutation p.P270S 0.36 tolerated(0.08) possibly_damaging(0.868) TCGA-EB-A97M-01 3 46755846 46755846 C T PRSS50 Missense_Mutation p.D206N 0.39 tolerated(0.42) benign(0.096) TCGA-EB-A97M-01 3 56183149 56183149 G A ERC2 Silent p.I387I 0.45 TCGA-EB-A97M-01 3 57913145 57913145 C T SLMAP 3'UTR 0.40 TCGA-EB-A97M-01 3 85961540 85961540 G A CADM2 Missense_Mutation p.E176K 0.46 tolerated(0.45) benign(0.086) TCGA-EB-A97M-01 3 9543961 9543961 C T LHFPL4 Silent p.R226R 0.40 TCGA-EB-A97M-01 4 100131451 100131451 A G ADH6 Missense_Mutation p.S119P 0.41 tolerated(0.28) benign(0.002) TCGA-EB-A97M-01 4 102791757 102791757 G A BANK1 Missense_Mutation p.E287K 0.41 tolerated(0.11) benign(0.003) TCGA-EB-A97M-01 4 103592506 103592506 G A MANBA Missense_Mutation p.R388W 0.37 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 4 120460134 120460134 C T PDE5A Missense_Mutation p.R538K 0.41 tolerated(0.7) benign(0) TCGA-EB-A97M-01 4 122854098 122854098 G A TRPC3 Silent p.R105R 0.34 TCGA-EB-A97M-01 4 153690551 153690551 C T TIGD4 3'UTR 0.50 TCGA-EB-A97M-01 4 155155852 155155852 C T DCHS2 Missense_Mutation p.G2863S 0.41 tolerated(0.35) benign(0.01) TCGA-EB-A97M-01 4 184618969 184618969 C T TRAPPC11 Silent p.L944L 0.53 TCGA-EB-A97M-01 4 22749332 22749332 C T GBA3 Missense_Mutation p.P234S 0.35 tolerated(0.11) benign(0.003) TCGA-EB-A97M-01 4 3371881 3371881 G C RGS12 Intron 0.36 TCGA-EB-A97M-01 4 3944949 3944949 C T FAM86EP RNA 0.30 TCGA-EB-A97M-01 4 46305590 46305590 C T GABRA2 Missense_Mutation p.R248K 0.48 deleterious(0) probably_damaging(0.996) TCGA-EB-A97M-01 4 47584021 47584021 C T ATP10D Silent p.P1231P 0.09 TCGA-EB-A97M-01 4 47663769 47663769 G A CORIN Missense_Mutation p.S565L 0.33 tolerated(0.15) benign(0.062) TCGA-EB-A97M-01 4 5961188 5961188 T C C4orf50 Missense_Mutation p.R723G 0.48 deleterious(0) probably_damaging(0.961) TCGA-EB-A97M-01 4 71471944 71471944 G A AMBN Missense_Mutation p.G281R 0.37 tolerated(0.07) benign(0.246) TCGA-EB-A97M-01 4 77317498 77317498 G A CCDC158 Missense_Mutation p.P71L 0.37 tolerated(0.16) probably_damaging(0.996) TCGA-EB-A97M-01 4 80899325 80899325 G A ANTXR2 Missense_Mutation p.R395C 0.42 deleterious(0) probably_damaging(0.993) TCGA-EB-A97M-01 4 81124608 81124608 G A PRDM8 Silent p.E664E 0.42 TCGA-EB-A97M-01 4 8621228 8621228 G A CPZ Missense_Mutation p.E615K 0.28 tolerated(0.15) benign(0.045) TCGA-EB-A97M-01 4 88767736 88767736 C T MEPE 3'UTR 0.36 TCGA-EB-A97M-01 4 89415370 89415370 C T HERC5 Silent p.L778L 0.42 TCGA-EB-A97M-01 4 95201808 95201808 C T SMARCAD1 Silent p.F830F 0.34 TCGA-EB-A97M-01 4 96070053 96070053 G A BMPR1B Missense_Mutation p.A441T 0.38 tolerated(0.09) possibly_damaging(0.622) TCGA-EB-A97M-01 4 96070054 96070054 C A BMPR1B Missense_Mutation p.A441D 0.38 deleterious(0) possibly_damaging(0.884) TCGA-EB-A97M-01 4 96090308 96090308 C T UNC5C 3'UTR 0.41 TCGA-EB-A97M-01 5 10992725 10992725 G A CTNND2 Missense_Mutation p.P1050L 0.43 deleterious(0) benign(0.235) TCGA-EB-A97M-01 5 112178747 112178747 C T APC Missense_Mutation p.P2486S 0.40 probably_damaging(1) TCGA-EB-A97M-01 5 137514424 137514424 C T BRD8 5'UTR 0.44 TCGA-EB-A97M-01 5 13871769 13871769 C T DNAH5 Missense_Mutation p.E1168K 0.43 benign(0.292) TCGA-EB-A97M-01 5 1401078 1401078 G A SLC6A3 Silent p.P597P 0.47 TCGA-EB-A97M-01 5 140214454 140214454 C T PCDHA7 Silent p.I162I 0.14 TCGA-EB-A97M-01 5 140228566 140228566 C T PCDHA9 Silent p.I162I 0.27 TCGA-EB-A97M-01 5 140474549 140474549 G A PCDHB2 Missense_Mutation p.G59R 0.49 tolerated_low_confidence(0.28) benign(0.021) TCGA-EB-A97M-01 5 140516338 140516338 C T PCDHB5 Missense_Mutation p.S441F 0.39 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-EB-A97M-01 5 140594226 140594226 C T PCDHB13 Silent p.S177S 0.38 TCGA-EB-A97M-01 5 140711115 140711115 G A PCDHGA1 Silent p.V288V 0.42 TCGA-EB-A97M-01 5 149510154 149510154 G A PDGFRB Missense_Mutation p.R439W 0.48 deleterious(0) possibly_damaging(0.696) TCGA-EB-A97M-01 5 149510155 149510155 G A PDGFRB Silent p.G438G 0.48 TCGA-EB-A97M-01 5 179043149 179043149 G A HNRNPH1 Silent p.G426G 0.50 TCGA-EB-A97M-01 5 180030339 180030339 G A FLT4 Silent p.S1315S 0.30 TCGA-EB-A97M-01 5 22142542 22142542 C T CDH12 Intron 0.32 TCGA-EB-A97M-01 5 33643572 33643572 C T ADAMTS12 Missense_Mutation p.V495I 0.37 tolerated(0.09) benign(0.014) TCGA-EB-A97M-01 5 34020709 34020709 G A C1QTNF3 Silent p.F313F 0.37 TCGA-EB-A97M-01 5 35957327 35957327 C T UGT3A1 Silent p.V346V 0.37 TCGA-EB-A97M-01 5 38403905 38403905 G A EGFLAM Intron 0.41 TCGA-EB-A97M-01 5 41160336 41160336 C T C6 Missense_Mutation p.R531Q 0.29 tolerated(0.05) benign(0.036) TCGA-EB-A97M-01 5 41803246 41803246 G A OXCT1 Silent p.I325I 0.43 TCGA-EB-A97M-01 5 57790709 57790709 G A GAPT Missense_Mutation p.G116R 0.37 tolerated(1) benign(0) TCGA-EB-A97M-01 5 63509892 63509892 G A RNF180 Missense_Mutation p.E247K 0.06 tolerated(0.12) benign(0.126) TCGA-EB-A97M-01 5 81574191 81574191 G A RPS23 5'UTR 0.50 TCGA-EB-A97M-01 6 12124541 12124541 C T HIVEP1 Missense_Mutation p.P1505S 0.39 tolerated(0.3) benign(0.049) TCGA-EB-A97M-01 6 128291379 128291379 G A PTPRK Missense_Mutation p.S1445L 0.70 deleterious_low_confidence(0) benign(0.053) TCGA-EB-A97M-01 6 128718723 128718723 C T PTPRK Missense_Mutation p.E71K 0.71 tolerated(0.24) benign(0.123) TCGA-EB-A97M-01 6 151914356 151914356 C T CCDC170 Missense_Mutation p.R470C 0.80 deleterious(0) probably_damaging(0.924) TCGA-EB-A97M-01 6 151917520 151917520 C T CCDC170 Silent p.L506L 0.75 TCGA-EB-A97M-01 6 161155082 161155082 C T PLG Missense_Mutation p.P548L 0.59 deleterious(0.01) possibly_damaging(0.464) TCGA-EB-A97M-01 6 167550000 167550000 C T CCR6 Silent p.L94L 0.70 TCGA-EB-A97M-01 6 30131815 30131815 C T TRIM15 Silent p.F118F 0.46 TCGA-EB-A97M-01 6 31726574 31726574 C T MSH5 Silent p.F416F 0.28 TCGA-EB-A97M-01 6 31975469 31975469 G A AL645922.1 5'Flank 0.29 TCGA-EB-A97M-01 6 32135380 32135380 G A EGFL8 Missense_Mutation p.R261Q 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-EB-A97M-01 6 32135381 32135381 G A EGFL8 Silent p.R261R 0.44 TCGA-EB-A97M-01 6 32290273 32290273 C T C6orf10 Silent p.Q190Q 0.40 TCGA-EB-A97M-01 6 33372868 33372868 C T KIFC1 Silent p.L332L 0.39 TCGA-EB-A97M-01 6 33695912 33695912 G A IP6K3 Missense_Mutation p.T122I 0.33 tolerated(0.17) benign(0.008) TCGA-EB-A97M-01 6 39286884 39286884 C G KCNK16 Missense_Mutation p.G80A 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-EB-A97M-01 6 42236163 42236163 G A TRERF1 Missense_Mutation p.P389L 0.40 tolerated_low_confidence(0.18) possibly_damaging(0.713) TCGA-EB-A97M-01 6 43325094 43325094 G A ZNF318 Missense_Mutation p.L320F 0.44 probably_damaging(0.991) TCGA-EB-A97M-01 6 43472501 43472501 G A TJAP1 Silent p.L194L 0.41 TCGA-EB-A97M-01 6 47649642 47649642 C T GPR111 Silent p.I449I 0.40 TCGA-EB-A97M-01 6 55216255 55216255 C T GFRAL Missense_Mutation p.A192V 0.44 tolerated(0.32) benign(0.069) TCGA-EB-A97M-01 6 55263984 55263984 C T GFRAL Missense_Mutation p.P320L 0.43 tolerated(0.72) benign(0.006) TCGA-EB-A97M-01 6 70092783 70092783 C T BAI3 Nonsense_Mutation p.Q1446* 0.44 TCGA-EB-A97M-01 6 70639339 70639339 G A COL19A1 Missense_Mutation p.G138E 0.36 tolerated(1) unknown(0) TCGA-EB-A97M-01 6 70926710 70926710 G A COL9A1 Missense_Mutation p.P886S 0.26 probably_damaging(1) TCGA-EB-A97M-01 6 74079022 74079022 C T OOEP Missense_Mutation p.E93K 0.48 tolerated(0.09) probably_damaging(0.994) TCGA-EB-A97M-01 6 74135062 74135062 G A MB21D1 Missense_Mutation p.P486L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 6 76744455 76744455 G A IMPG1 Silent p.I117I 0.33 TCGA-EB-A97M-01 6 80203406 80203406 C T LCA5 Missense_Mutation p.R261K 0.41 tolerated(0.95) benign(0.05) TCGA-EB-A97M-01 6 90432808 90432808 C T MDN1 Missense_Mutation p.E1945K 0.38 probably_damaging(1) TCGA-EB-A97M-01 6 96651433 96651433 G A FUT9 Missense_Mutation p.M134I 0.42 tolerated(0.17) benign(0.261) TCGA-EB-A97M-01 7 116937703 116937703 C T WNT2 Silent p.E272E 0.28 TCGA-EB-A97M-01 7 123101465 123101465 G A IQUB Silent p.L651L 0.66 TCGA-EB-A97M-01 7 143657265 143657265 C T OR2F1 Missense_Mutation p.L68F 0.41 tolerated(1) benign(0.003) TCGA-EB-A97M-01 7 144060483 144060483 C T ARHGEF5 Missense_Mutation p.R241W 0.22 deleterious(0) benign(0) TCGA-EB-A97M-01 7 149255817 149255817 G A ZNF767 RNA 0.33 TCGA-EB-A97M-01 7 30008609 30008609 C T SCRN1 Silent p.G45G 0.51 TCGA-EB-A97M-01 7 57522827 57522827 A G ZNF716 Missense_Mutation p.K72R 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-EB-A97M-01 7 57528829 57528829 C T ZNF716 Missense_Mutation p.S221F 0.47 deleterious(0) possibly_damaging(0.871) TCGA-EB-A97M-01 7 6838775 6838775 C T CCZ1B 3'UTR 0.95 TCGA-EB-A97M-01 7 82579931 82579931 T A PCLO Missense_Mutation p.T3325S 0.24 unknown(0) TCGA-EB-A97M-01 7 95167058 95167058 G A ASB4 Missense_Mutation p.G423E 0.58 deleterious(0.02) probably_damaging(0.975) TCGA-EB-A97M-01 8 103564040 103564040 G A ODF1 Missense_Mutation p.D29N 0.27 deleterious_low_confidence(0.02) probably_damaging(0.959) TCGA-EB-A97M-01 8 10756221 10756221 G A XKR6 Silent p.F389F 0.78 TCGA-EB-A97M-01 8 107719331 107719331 G A OXR1 Missense_Mutation p.E529K 0.31 tolerated(0.11) benign(0.14) TCGA-EB-A97M-01 8 108315581 108315581 C T ANGPT1 Missense_Mutation p.G275R 0.37 tolerated(0.54) benign(0.031) TCGA-EB-A97M-01 8 118183312 118183312 T C SLC30A8 Missense_Mutation p.L290P 0.32 tolerated(0.16) possibly_damaging(0.882) TCGA-EB-A97M-01 8 130789691 130789691 G A GSDMC Missense_Mutation p.S48L 0.51 tolerated(0.42) benign(0.007) TCGA-EB-A97M-01 8 142367553 142367553 G A GPR20 Silent p.G157G 0.21 TCGA-EB-A97M-01 8 16026278 16026278 C T MSR1 Missense_Mutation p.E107K 0.62 tolerated(0.27) benign(0.056) TCGA-EB-A97M-01 8 39495186 39495186 T G ADAM18 Missense_Mutation p.L264R 0.22 deleterious(0) probably_damaging(0.989) TCGA-EB-A97M-01 8 55538431 55538431 G A RP1 Silent p.K663K 0.34 TCGA-EB-A97M-01 8 62212635 62212635 G A CLVS1 Silent p.R83R 0.36 TCGA-EB-A97M-01 8 68984805 68984805 G A PREX2 Silent p.Q523Q 0.33 TCGA-EB-A97M-01 8 71128901 71128901 C T NCOA2 Missense_Mutation p.G27E 0.28 deleterious(0) probably_damaging(1) TCGA-EB-A97M-01 8 71128902 71128902 C T NCOA2 Missense_Mutation p.G27R 0.27 deleterious(0.03) probably_damaging(1) TCGA-EB-A97M-01 8 77767919 77767919 C T ZFHX4 Missense_Mutation p.S2921F 0.32 possibly_damaging(0.905) TCGA-EB-A97M-01 8 91049066 91049066 C T DECR1 Intron 0.58 TCGA-EB-A97M-01 9 104432978 104432978 G A GRIN3A Silent p.F572F 0.74 TCGA-EB-A97M-01 9 117846643 117846643 G A TNC Missense_Mutation p.T659I 0.71 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 9 131756705 131756705 C T NUP188 Missense_Mutation p.P1024L 0.68 deleterious(0) probably_damaging(0.999) TCGA-EB-A97M-01 9 139794921 139794921 C T TRAF2 Silent p.A105A 0.54 TCGA-EB-A97M-01 9 27192576 27192576 G A TEK Missense_Mutation p.E527K 0.80 deleterious(0.01) possibly_damaging(0.794) TCGA-EB-A97M-01 9 8484293 8484293 G A PTPRD Missense_Mutation p.S1080L 0.73 tolerated(0.73) benign(0.141) TCGA-EB-A97M-01 X 107938566 107938566 C T COL4A5 Missense_Mutation p.R1631C 0.86 probably_damaging(1) TCGA-EB-A97M-01 X 109697740 109697740 G A RGAG1 Missense_Mutation p.E1299K 0.85 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EB-A97M-01 X 141290989 141290989 C T MAGEC2 Missense_Mutation p.R262K 0.83 tolerated(0.11) benign(0.194) TCGA-EB-A97M-01 X 14708921 14708921 C T GLRA2 Silent p.F340F 0.89 TCGA-EB-A97M-01 X 153689771 153689771 C T PLXNA3 Silent p.G309G 0.84 TCGA-EB-A97M-01 X 29973301 29973301 G A IL1RAPL1 Silent p.R485R 0.77 TCGA-EB-A97M-01 X 36089995 36089995 G A CHDC2 Missense_Mutation p.D33N 0.53 deleterious_low_confidence(0.03) benign(0.15) TCGA-EB-A97M-01 X 54224894 54224894 C T WNK3 Missense_Mutation p.G1756R 0.74 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-EB-A97M-01 X 6069477 6069477 G A NLGN4X Missense_Mutation p.P11S 0.78 tolerated_low_confidence(0.53) probably_damaging(0.979) TCGA-EE-A17X-06 10 100016611 100016611 C T LOXL4 Missense_Mutation p.E452K 0.49 deleterious(0.01) benign(0.371) TCGA-EE-A17X-06 10 102013297 102013297 C T CWF19L1 Splice_Site p.X169_splice 0.43 TCGA-EE-A17X-06 10 103345652 103345652 T A POLL Missense_Mutation p.D126V 0.49 deleterious(0) possibly_damaging(0.796) TCGA-EE-A17X-06 10 105903397 105903397 C T WDR96 Silent p.R1315R 0.47 TCGA-EE-A17X-06 10 111890164 111890164 C T ADD3 Missense_Mutation p.P551L 0.35 deleterious(0) probably_damaging(0.946) TCGA-EE-A17X-06 10 115343036 115343036 C T HABP2 Missense_Mutation p.H386Y 0.47 tolerated(0.16) benign(0.3) TCGA-EE-A17X-06 10 115991344 115991344 C T TDRD1 3'UTR 0.38 TCGA-EE-A17X-06 10 116887370 116887370 C T ATRNL1 Missense_Mutation p.P169S 0.46 tolerated(0.12) probably_damaging(0.986) TCGA-EE-A17X-06 10 116975623 116975623 T G ATRNL1 Missense_Mutation p.V506G 0.43 deleterious(0.02) probably_damaging(0.91) TCGA-EE-A17X-06 10 118368581 118368581 G A PNLIPRP1 Missense_Mutation p.E453K 0.34 tolerated(0.32) benign(0.003) TCGA-EE-A17X-06 10 118423638 118423638 C T C10orf82 3'UTR 0.48 TCGA-EE-A17X-06 10 120514384 120514384 G A CACUL1 5'UTR 0.45 TCGA-EE-A17X-06 10 12143169 12143169 G A DHTKD1 Missense_Mutation p.G629R 0.36 deleterious(0) probably_damaging(0.974) TCGA-EE-A17X-06 10 123848060 123848060 G A TACC2 Missense_Mutation p.D1843N 0.36 benign(0.156) TCGA-EE-A17X-06 10 124402799 124402799 G A DMBT1 Missense_Mutation p.R2376Q 0.44 tolerated(0.37) probably_damaging(0.988) TCGA-EE-A17X-06 10 125514272 125514272 G A CPXM2 Missense_Mutation p.R642C 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 10 12708735 12708735 G A CAMK1D Silent p.K75K 0.42 TCGA-EE-A17X-06 10 127677178 127677178 C T FANK1 Missense_Mutation p.R84C 0.39 deleterious(0) possibly_damaging(0.804) TCGA-EE-A17X-06 10 134563050 134563050 G A INPP5A Silent p.T254T 0.31 TCGA-EE-A17X-06 10 134624457 134624457 C T TTC40 Missense_Mutation p.R2527K 0.40 tolerated(1) benign(0.001) TCGA-EE-A17X-06 10 15151041 15151041 A T NMT2 3'UTR 0.33 TCGA-EE-A17X-06 10 21185889 21185889 C T NEBL Missense_Mutation p.D51N 0.28 deleterious(0.04) benign(0.123) TCGA-EE-A17X-06 10 25887846 25887846 G A GPR158 Silent p.E1097E 0.45 TCGA-EE-A17X-06 10 25888089 25888089 C A GPR158 Silent p.T1178T 0.41 TCGA-EE-A17X-06 10 26825083 26825083 G A APBB1IP Nonsense_Mutation p.W327* 0.38 TCGA-EE-A17X-06 10 34606232 34606232 C T PARD3 Silent p.G959G 0.40 TCGA-EE-A17X-06 10 37431162 37431162 G A ANKRD30A Missense_Mutation p.R390K 0.46 tolerated(0.8) benign(0.027) TCGA-EE-A17X-06 10 43015811 43015811 G A ZNF37BP RNA 0.50 TCGA-EE-A17X-06 10 46965118 46965118 G A SYT15 Missense_Mutation p.P276L 0.12 tolerated(0.26) benign(0.216) TCGA-EE-A17X-06 10 47087158 47087158 G A NPY4R Silent p.V125V 0.13 TCGA-EE-A17X-06 10 52071152 52071152 T C SGMS1 Silent p.Q255Q 0.58 TCGA-EE-A17X-06 10 55955622 55955622 G A PCDH15 Missense_Mutation p.P376S 0.35 tolerated(0.21) possibly_damaging(0.823) TCGA-EE-A17X-06 10 61004923 61004923 G A PHYHIPL Missense_Mutation p.E235K 0.53 tolerated(0.11) probably_damaging(0.979) TCGA-EE-A17X-06 10 61830575 61830575 G T ANK3 Missense_Mutation p.S3355Y 0.42 benign(0.133) TCGA-EE-A17X-06 10 72358251 72358251 G A PRF1 Missense_Mutation p.P409L 0.41 deleterious(0) probably_damaging(0.985) TCGA-EE-A17X-06 10 72358252 72358252 G A PRF1 Missense_Mutation p.P409S 0.41 tolerated(0.59) benign(0.209) TCGA-EE-A17X-06 10 73511434 73511434 G A C10orf54 Missense_Mutation p.P297S 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A17X-06 10 74658754 74658754 C T OIT3 Missense_Mutation p.R132C 0.44 deleterious(0) possibly_damaging(0.587) TCGA-EE-A17X-06 10 76855508 76855508 G A DUSP13 Silent p.T123T 0.44 TCGA-EE-A17X-06 10 76990717 76990717 G A VDAC2 Silent p.K300K 0.31 TCGA-EE-A17X-06 10 90034757 90034757 C T RNLS Silent p.A303A 0.35 TCGA-EE-A17X-06 10 95360699 95360699 G A RBP4 Silent p.V29V 0.38 TCGA-EE-A17X-06 10 96540392 96540392 G A CYP2C19 Silent p.R206R 0.36 TCGA-EE-A17X-06 10 97791574 97791574 C T CC2D2B Intron 0.45 TCGA-EE-A17X-06 10 98923177 98923177 C T SLIT1 Missense_Mutation p.E101K 0.46 deleterious(0.01) possibly_damaging(0.747) TCGA-EE-A17X-06 10 99349867 99349867 C T C10orf62 Silent p.S71S 0.45 TCGA-EE-A17X-06 10 99661391 99661391 G A CRTAC1 Silent p.I334I 0.55 TCGA-EE-A17X-06 11 100169975 100169975 G A CNTN5 Missense_Mutation p.E823K 0.18 tolerated(0.61) probably_damaging(0.999) TCGA-EE-A17X-06 11 100962567 100962567 G A PGR Silent p.I610I 0.53 TCGA-EE-A17X-06 11 102661530 102661530 C T MMP1 Missense_Mutation p.E402K 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 11 103057112 103057112 A C DYNC2H1 Missense_Mutation p.T2259P 0.56 benign(0.005) TCGA-EE-A17X-06 11 113078697 113078697 G A NCAM1 Missense_Mutation p.D356N 0.24 deleterious(0.02) benign(0.074) TCGA-EE-A17X-06 11 116744293 116744293 G A SIK3 Silent p.G489G 0.40 TCGA-EE-A17X-06 11 119059486 119059486 C T PDZD3 Silent p.S399S 0.50 TCGA-EE-A17X-06 11 119059487 119059487 C T PDZD3 Nonsense_Mutation p.R400* 0.49 TCGA-EE-A17X-06 11 119549429 119549429 G A PVRL1 Silent p.F42F 0.62 TCGA-EE-A17X-06 11 11987501 11987501 G A DKK3 Missense_Mutation p.P229S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 11 120310856 120310856 G A ARHGEF12 Missense_Mutation p.G340R 0.39 deleterious(0) benign(0.358) TCGA-EE-A17X-06 11 121023770 121023770 C T TECTA Missense_Mutation p.S1429F 0.31 tolerated(0.69) benign(0.225) TCGA-EE-A17X-06 11 121059869 121059869 G A TECTA Silent p.R2081R 0.40 TCGA-EE-A17X-06 11 121393634 121393634 G A SORL1 Missense_Mutation p.G511E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 11 121416054 121416054 C T SORL1 Missense_Mutation p.P656L 0.35 tolerated(0.14) benign(0.367) TCGA-EE-A17X-06 11 122756873 122756873 C T C11orf63 Missense_Mutation p.H106Y 0.33 tolerated(0.57) possibly_damaging(0.555) TCGA-EE-A17X-06 11 123676143 123676143 G A OR6M1 Silent p.I305I 0.30 TCGA-EE-A17X-06 11 123908965 123908965 A C OR10G7 Silent p.L248L 0.37 TCGA-EE-A17X-06 11 124293858 124293858 G A OR8B4 Silent p.L304L 0.48 TCGA-EE-A17X-06 11 128842523 128842523 C A ARHGAP32 Missense_Mutation p.S1279I 0.24 tolerated_low_confidence(0.08) benign(0.11) TCGA-EE-A17X-06 11 130060463 130060463 G A ST14 Missense_Mutation p.G250E 0.51 deleterious(0) possibly_damaging(0.853) TCGA-EE-A17X-06 11 134048799 134048799 G A NCAPD3 Silent p.A864A 0.52 TCGA-EE-A17X-06 11 134113052 134113052 C T VPS26B Silent p.F195F 0.36 TCGA-EE-A17X-06 11 1642985 1642985 G A KRTAP5-4 Silent p.S113S 0.31 TCGA-EE-A17X-06 11 17482077 17482077 G A ABCC8 Silent p.I323I 0.41 TCGA-EE-A17X-06 11 17793727 17793727 G A KCNC1 Missense_Mutation p.M362I 0.48 tolerated(0.06) probably_damaging(0.995) TCGA-EE-A17X-06 11 18195625 18195625 C T MRGPRX4 Silent p.F274F 0.47 TCGA-EE-A17X-06 11 19197388 19197388 C T ZDHHC13 Silent p.L584L 0.40 TCGA-EE-A17X-06 11 20388938 20388938 C T HTATIP2 Intron 0.50 TCGA-EE-A17X-06 11 2170541 2170541 G A INS-IGF2 Silent p.T74T 0.45 TCGA-EE-A17X-06 11 22257768 22257768 G A ANO5 Silent p.G236G 0.46 TCGA-EE-A17X-06 11 22301197 22301197 C T ANO5 Silent p.L876L 0.33 TCGA-EE-A17X-06 11 2439583 2439583 G A TRPM5 Silent p.I240I 0.45 TCGA-EE-A17X-06 11 32663598 32663598 C T CCDC73 Missense_Mutation p.E324K 0.47 deleterious(0.04) benign(0.303) TCGA-EE-A17X-06 11 35016516 35016516 C T PDHX Missense_Mutation p.P435S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 11 3803334 3803334 G A NUP98 Missense_Mutation p.S5L 0.37 deleterious(0) unknown(0) TCGA-EE-A17X-06 11 40137212 40137212 C T LRRC4C Missense_Mutation p.E211K 0.41 tolerated(0.08) benign(0.021) TCGA-EE-A17X-06 11 40137715 40137715 C T LRRC4C Missense_Mutation p.R43Q 0.60 tolerated(0.57) benign(0.367) TCGA-EE-A17X-06 11 430322 430322 C T ANO9 Silent p.T207T 0.74 TCGA-EE-A17X-06 11 4389277 4389277 G A OR52B4 Silent p.A83A 0.37 TCGA-EE-A17X-06 11 46667426 46667426 T C ATG13 Silent p.L53L 0.52 TCGA-EE-A17X-06 11 47446711 47446711 C T PSMC3 Silent p.V82V 0.42 TCGA-EE-A17X-06 11 48286276 48286276 G A OR4X1 Silent p.R288R 0.38 TCGA-EE-A17X-06 11 4903218 4903218 C T OR51T1 Missense_Mutation p.S57F 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A17X-06 11 4944768 4944768 C T OR51G1 Missense_Mutation p.E268K 0.44 tolerated(1) benign(0.004) TCGA-EE-A17X-06 11 49974618 49974618 C T OR4C13 Missense_Mutation p.S215F 0.44 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-EE-A17X-06 11 5012670 5012670 G A MMP26 Missense_Mutation p.G180E 0.37 tolerated(0.5) benign(0.002) TCGA-EE-A17X-06 11 5020353 5020353 C T OR51L1 Silent p.I47I 0.47 TCGA-EE-A17X-06 11 5068546 5068546 G A OR52J3 Missense_Mutation p.R264Q 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 11 5461959 5461959 C T OR51I1 Missense_Mutation p.M262I 0.40 tolerated(0.25) benign(0.076) TCGA-EE-A17X-06 11 5462139 5462139 G A OR51I1 Silent p.L202L 0.50 TCGA-EE-A17X-06 11 551784 551784 T A LRRC56 Silent p.S310S 0.47 TCGA-EE-A17X-06 11 55418847 55418847 C T OR4S2 Silent p.I156I 0.43 TCGA-EE-A17X-06 11 55595333 55595333 C T OR5L2 Silent p.I213I 0.51 TCGA-EE-A17X-06 11 55927659 55927659 C T OR8K5 Missense_Mutation p.M45I 0.34 tolerated_low_confidence(0.32) benign(0.006) TCGA-EE-A17X-06 11 56043337 56043337 C T OR5T1 Missense_Mutation p.L75F 0.40 deleterious(0) possibly_damaging(0.882) TCGA-EE-A17X-06 11 56184842 56184842 G A OR5R1 Silent p.I289I 0.39 TCGA-EE-A17X-06 11 5625835 5625835 C T TRIM6 Silent p.I193I 0.41 TCGA-EE-A17X-06 11 57958679 57958679 C T OR9Q2 Silent p.S239S 0.40 TCGA-EE-A17X-06 11 5862787 5862787 C T OR52E6 Missense_Mutation p.S114N 0.42 deleterious(0) possibly_damaging(0.606) TCGA-EE-A17X-06 11 59630112 59630112 C T TCN1 Missense_Mutation p.D115N 0.21 tolerated(0.26) possibly_damaging(0.902) TCGA-EE-A17X-06 11 59939540 59939540 T A MS4A6A 3'Flank 0.50 TCGA-EE-A17X-06 11 59939543 59939543 G A MS4A6A 3'Flank 0.48 TCGA-EE-A17X-06 11 62294664 62294664 G A AHNAK Missense_Mutation p.P2409S 0.27 benign(0.047) TCGA-EE-A17X-06 11 62303492 62303492 G A AHNAK Nonsense_Mutation p.Q27* 0.45 TCGA-EE-A17X-06 11 6261336 6261336 G C CNGA4 Missense_Mutation p.R104S 0.41 deleterious(0.01) benign(0.006) TCGA-EE-A17X-06 11 62933578 62933578 C T SLC22A25 Missense_Mutation p.S408N 0.40 tolerated(0.13) benign(0.261) TCGA-EE-A17X-06 11 62948233 62948233 G A SLC22A25 Silent p.T323T 0.53 TCGA-EE-A17X-06 11 63141197 63141197 C T SLC22A9 Silent p.F196F 0.39 TCGA-EE-A17X-06 11 64599096 64599096 C T CDC42BPG Missense_Mutation p.G1062D 0.60 tolerated(0.51) probably_damaging(0.914) TCGA-EE-A17X-06 11 64726889 64726889 G A C11orf85 5'UTR 0.45 TCGA-EE-A17X-06 11 65046214 65046214 C T POLA2 Nonsense_Mutation p.Q159* 0.46 TCGA-EE-A17X-06 11 66133652 66133652 G A SLC29A2 Silent p.S306S 0.38 TCGA-EE-A17X-06 11 66192014 66192014 G A NPAS4 Silent p.E551E 0.40 TCGA-EE-A17X-06 11 6662256 6662256 G A DCHS1 Missense_Mutation p.P197S 0.47 tolerated(0.24) possibly_damaging(0.602) TCGA-EE-A17X-06 11 67200847 67200847 G A RPS6KB2 Missense_Mutation p.D279N 0.44 tolerated(0.22) probably_damaging(0.969) TCGA-EE-A17X-06 11 67286622 67286622 C T CABP2 Missense_Mutation p.M217I 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A17X-06 11 67430692 67430692 G A ALDH3B2 Silent p.L384L 0.45 TCGA-EE-A17X-06 11 6891351 6891351 C T OR10A2 Silent p.I122I 0.51 TCGA-EE-A17X-06 11 6891566 6891566 T G OR10A2 Missense_Mutation p.V194G 0.51 tolerated(0.07) possibly_damaging(0.903) TCGA-EE-A17X-06 11 7111098 7111098 G A RBMXL2 Silent p.R249R 0.28 TCGA-EE-A17X-06 11 71249145 71249145 G A KRTAP5-8 Missense_Mutation p.G15E 0.46 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A17X-06 11 71939529 71939529 C T INPPL1 Silent p.D128D 0.29 TCGA-EE-A17X-06 11 71939530 71939530 C T INPPL1 Missense_Mutation p.R129W 0.30 deleterious(0) probably_damaging(0.952) TCGA-EE-A17X-06 11 74680701 74680701 A G SPCS2 Missense_Mutation p.M151V 0.46 tolerated(0.41) benign(0.004) TCGA-EE-A17X-06 11 76371341 76371341 G A LRRC32 Silent p.G432G 0.68 TCGA-EE-A17X-06 11 77553552 77553552 C T AAMDC Missense_Mutation p.P4S 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 11 7950066 7950066 G A OR10A6 Silent p.I48I 0.48 TCGA-EE-A17X-06 11 8486289 8486289 C T STK33 Silent p.T140T 0.44 TCGA-EE-A17X-06 11 85701401 85701401 G A PICALM Missense_Mutation p.P434S 0.36 tolerated(0.14) benign(0.335) TCGA-EE-A17X-06 11 88386377 88386377 C T GRM5 Missense_Mutation p.G369E 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A17X-06 11 89421805 89421805 G A FOLH1B RNA 0.44 TCGA-EE-A17X-06 11 89892443 89892443 G A NAALAD2 Nonsense_Mutation p.W309* 0.38 TCGA-EE-A17X-06 11 92085899 92085899 C T FAT3 Silent p.H207H 0.44 TCGA-EE-A17X-06 11 92523187 92523187 G A FAT3 Missense_Mutation p.D1472N 0.40 probably_damaging(1) TCGA-EE-A17X-06 11 92523341 92523341 G A FAT3 Missense_Mutation p.R1523K 0.35 possibly_damaging(0.869) TCGA-EE-A17X-06 11 92599969 92599969 C T FAT3 Silent p.I3907I 0.42 TCGA-EE-A17X-06 11 94924756 94924756 C T SESN3 Missense_Mutation p.A52T 0.60 tolerated(0.56) probably_damaging(0.997) TCGA-EE-A17X-06 11 96117829 96117829 C T CCDC82 Missense_Mutation p.R28Q 0.43 deleterious(0) probably_damaging(0.978) TCGA-EE-A17X-06 11 99827605 99827605 C T CNTN5 Silent p.I247I 0.34 TCGA-EE-A17X-06 12 101477456 101477456 G A ANO4 Missense_Mutation p.E431K 0.35 deleterious(0) possibly_damaging(0.874) TCGA-EE-A17X-06 12 101731947 101731947 G A UTP20 Missense_Mutation p.D1254N 0.46 deleterious(0.04) benign(0.016) TCGA-EE-A17X-06 12 103984798 103984798 C T STAB2 Nonsense_Mutation p.R69* 0.45 TCGA-EE-A17X-06 12 104140468 104140468 G A STAB2 Missense_Mutation p.G2077E 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 12 110719708 110719708 C A ATP2A2 Silent p.S38S 0.35 TCGA-EE-A17X-06 12 111745042 111745042 G A CUX2 Missense_Mutation p.E364K 0.43 deleterious(0) probably_damaging(0.972) TCGA-EE-A17X-06 12 112182701 112182701 G A ACAD10 Missense_Mutation p.E688K 0.41 tolerated(0.11) benign(0.015) TCGA-EE-A17X-06 12 117685243 117685243 C T NOS1 Silent p.L945L 0.42 TCGA-EE-A17X-06 12 117768977 117768977 G A NOS1 5'Flank 0.41 TCGA-EE-A17X-06 12 118199001 118199001 G A KSR2 Silent p.I267I 0.39 TCGA-EE-A17X-06 12 123687198 123687198 G A MPHOSPH9 Missense_Mutation p.S433F 0.43 deleterious(0) probably_damaging(0.942) TCGA-EE-A17X-06 12 129559541 129559541 C T TMEM132D Missense_Mutation p.D727N 0.36 tolerated(0.12) possibly_damaging(0.622) TCGA-EE-A17X-06 12 131359257 131359257 C T RAN Silent p.F138F 0.44 TCGA-EE-A17X-06 12 13526349 13526349 G A C12orf36 Missense_Mutation p.S69L 0.48 possibly_damaging(0.519) TCGA-EE-A17X-06 12 1965396 1965396 C T CACNA2D4 Splice_Site p.X670_splice 0.44 TCGA-EE-A17X-06 12 21457408 21457408 G A SLCO1A2 Missense_Mutation p.S181F 0.49 deleterious(0) probably_damaging(0.995) TCGA-EE-A17X-06 12 22001151 22001151 C T ABCC9 Silent p.E933E 0.36 TCGA-EE-A17X-06 12 416839 416839 G A KDM5A Silent p.P1237P 0.49 TCGA-EE-A17X-06 12 45410265 45410265 G A DBX2 Missense_Mutation p.P275L 0.42 deleterious(0) benign(0.393) TCGA-EE-A17X-06 12 45410267 45410267 A T DBX2 Silent p.S274S 0.41 TCGA-EE-A17X-06 12 48920048 48920048 C T OR8S1 Missense_Mutation p.L212F 0.35 tolerated(0.18) benign(0.101) TCGA-EE-A17X-06 12 48921757 48921757 G A OR8S1 Nonsense_Mutation p.W317* 0.34 TCGA-EE-A17X-06 12 52370179 52370179 C T ACVR1B Missense_Mutation p.P134S 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A17X-06 12 52702413 52702413 C T KRT86 3'UTR 0.83 TCGA-EE-A17X-06 12 52777539 52777539 C T KRT84 Nonsense_Mutation p.W197* 0.48 TCGA-EE-A17X-06 12 53164827 53164827 C T KRT76 Silent p.V480V 0.36 TCGA-EE-A17X-06 12 53242411 53242411 G A KRT78 Missense_Mutation p.P102S 0.47 deleterious(0.03) benign(0.166) TCGA-EE-A17X-06 12 54905807 54905807 G A NCKAP1L Missense_Mutation p.G287S 0.48 tolerated(1) benign(0.07) TCGA-EE-A17X-06 12 55421390 55421390 C T NEUROD4 3'UTR 0.29 TCGA-EE-A17X-06 12 55524300 55524300 G A OR9K2 Missense_Mutation p.V250I 0.35 tolerated(1) benign(0.252) TCGA-EE-A17X-06 12 55714467 55714467 C T OR6C1 Silent p.F28F 0.38 TCGA-EE-A17X-06 12 55846618 55846618 C T OR6C2 Silent p.I207I 0.39 TCGA-EE-A17X-06 12 56397533 56397533 G A SUOX Silent p.G120G 0.45 TCGA-EE-A17X-06 12 56822793 56822793 G A TIMELESS Missense_Mutation p.S393F 0.44 deleterious(0.03) benign(0.163) TCGA-EE-A17X-06 12 56845018 56845018 C T MIP 3'UTR 0.53 TCGA-EE-A17X-06 12 57111634 57111634 G A NACA Intron 0.42 TCGA-EE-A17X-06 12 57397508 57397508 G A ZBTB39 Silent p.F398F 0.45 TCGA-EE-A17X-06 12 57424938 57424938 C T MYO1A Silent p.G790G 0.37 TCGA-EE-A17X-06 12 57911162 57911162 A C DDIT3 Missense_Mutation p.F33V 0.36 tolerated(0.6) benign(0.124) TCGA-EE-A17X-06 12 6422940 6422940 C T PLEKHG6 Missense_Mutation p.P95L 0.50 deleterious(0) possibly_damaging(0.878) TCGA-EE-A17X-06 12 67691613 67691613 C T CAND1 Silent p.A278A 0.37 TCGA-EE-A17X-06 12 71531774 71531774 C T TSPAN8 Missense_Mutation p.E135K 0.39 tolerated(0.37) benign(0.103) TCGA-EE-A17X-06 12 72017247 72017247 G C ZFC3H1 Missense_Mutation p.S1546C 0.34 tolerated(0.08) benign(0.003) TCGA-EE-A17X-06 12 7242713 7242713 G A C1R Silent p.S120S 0.41 TCGA-EE-A17X-06 12 72956810 72956810 C T TRHDE Nonsense_Mutation p.Q633* 0.50 TCGA-EE-A17X-06 12 80623121 80623121 C T OTOGL Nonsense_Mutation p.R183* 0.42 TCGA-EE-A17X-06 12 80761448 80761448 G A OTOGL Missense_Mutation p.E2138K 0.62 tolerated(0.81) benign(0.35) TCGA-EE-A17X-06 12 81101504 81101504 G A MYF6 Missense_Mutation p.M2I 0.45 deleterious(0.01) possibly_damaging(0.838) TCGA-EE-A17X-06 12 88912537 88912537 G A KITLG Silent p.I100I 0.43 TCGA-EE-A17X-06 12 92539259 92539259 G A BTG1 Missense_Mutation p.A18V 0.42 deleterious(0) possibly_damaging(0.614) TCGA-EE-A17X-06 12 97082754 97082754 C T C12orf55 Silent p.L2025L 0.34 TCGA-EE-A17X-06 12 98849624 98849624 G A SLC9A7P1 RNA 0.27 TCGA-EE-A17X-06 12 99145141 99145141 T A ANKS1B Nonsense_Mutation p.K1222* 0.44 TCGA-EE-A17X-06 12 99548138 99548138 A G ANKS1B Silent p.L819L 0.42 TCGA-EE-A17X-06 13 111109710 111109710 G A COL4A2 Missense_Mutation p.G454R 0.33 probably_damaging(1) TCGA-EE-A17X-06 13 19997285 19997285 C T TPTE2 Missense_Mutation p.E496K 0.30 deleterious(0) probably_damaging(0.93) TCGA-EE-A17X-06 13 20038604 20038604 G A TPTE2 Missense_Mutation p.P245S 0.62 deleterious(0) probably_damaging(0.927) TCGA-EE-A17X-06 13 21417979 21417979 G A XPO4 Missense_Mutation p.S168L 0.37 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A17X-06 13 25008897 25008897 G A PARP4 Missense_Mutation p.P1461L 0.20 tolerated(0.09) benign(0.003) TCGA-EE-A17X-06 13 25281489 25281489 C T ATP12A Missense_Mutation p.P810L 0.49 deleterious(0.01) benign(0.391) TCGA-EE-A17X-06 13 26116179 26116179 G A ATP8A2 Silent p.G258G 0.23 TCGA-EE-A17X-06 13 26967593 26967593 C T CDK8 Missense_Mutation p.P246S 0.39 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A17X-06 13 29600557 29600557 T A MTUS2 Silent p.P584P 0.38 TCGA-EE-A17X-06 13 36006489 36006489 C T NBEA Missense_Mutation p.S2088F 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A17X-06 13 36046664 36046664 C T NBEA Silent p.I2192I 0.46 TCGA-EE-A17X-06 13 42830421 42830421 T C FHP1 RNA 0.36 TCGA-EE-A17X-06 13 46721144 46721144 C T LCP1 Missense_Mutation p.G358E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 13 77641724 77641724 G A MYCBP2 Silent p.F4111F 0.45 TCGA-EE-A17X-06 13 88328984 88328984 G A SLITRK5 Missense_Mutation p.M447I 0.45 tolerated(0.27) benign(0.001) TCGA-EE-A17X-06 13 95055279 95055279 C T GPC6 Silent p.S492S 0.43 TCGA-EE-A17X-06 14 102793131 102793131 C T ZNF839 Silent p.S366S 0.75 TCGA-EE-A17X-06 14 105061533 105061533 G A TMEM179 Missense_Mutation p.S164F 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 14 105406625 105406625 C A AHNAK2 Missense_Mutation p.G5055W 0.33 probably_damaging(0.983) TCGA-EE-A17X-06 14 105416205 105416205 G A AHNAK2 Silent p.S1861S 0.38 TCGA-EE-A17X-06 14 105416206 105416206 G A AHNAK2 Missense_Mutation p.S1861F 0.38 benign(0) TCGA-EE-A17X-06 14 105418242 105418242 G A AHNAK2 Silent p.I1182I 0.32 TCGA-EE-A17X-06 14 106757836 106757836 C T IGHV2-26 Nonsense_Mutation p.W57* 0.23 TCGA-EE-A17X-06 14 106877887 106877887 C T IGHV4-39 Missense_Mutation p.G36E 0.46 deleterious(0.02) benign(0.422) TCGA-EE-A17X-06 14 107083659 107083659 G A IGHV4-59 Silent p.L9L 0.25 TCGA-EE-A17X-06 14 107211013 107211013 G A IGHV3-73 Silent p.S92S 0.40 TCGA-EE-A17X-06 14 20502796 20502796 C T OR4K13 Missense_Mutation p.G41E 0.50 deleterious(0) probably_damaging(0.95) TCGA-EE-A17X-06 14 20665716 20665716 C T OR11G2 Silent p.L74L 0.26 TCGA-EE-A17X-06 14 21025022 21025022 G A RNASE9 Silent p.V74V 0.36 TCGA-EE-A17X-06 14 21623849 21623849 G A OR5AU1 Silent p.S112S 0.41 TCGA-EE-A17X-06 14 21827667 21827667 G A SUPT16H Silent p.D759D 0.36 TCGA-EE-A17X-06 14 22386781 22386781 C T TRAV13-2 Missense_Mutation p.P64S 0.36 tolerated(0.08) possibly_damaging(0.841) TCGA-EE-A17X-06 14 22564685 22564685 G A TRDV1 Missense_Mutation p.E46K 0.45 deleterious(0.04) benign(0.397) TCGA-EE-A17X-06 14 23894992 23894992 C T MYH7 Missense_Mutation p.G733E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 14 23894993 23894993 C T MYH7 Missense_Mutation p.G733R 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A17X-06 14 23899827 23899827 G A MYH7 Missense_Mutation p.S314F 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A17X-06 14 26917170 26917170 C T NOVA1 Missense_Mutation p.G507S 0.27 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-EE-A17X-06 14 28733748 28733748 C T BNIP3P1 RNA 0.58 TCGA-EE-A17X-06 14 31626487 31626487 G A HECTD1 Nonsense_Mutation p.R549* 0.41 TCGA-EE-A17X-06 14 53100346 53100346 C T GPR137C Silent p.F322F 0.46 TCGA-EE-A17X-06 14 53138399 53138399 G A ERO1L Missense_Mutation p.L153F 0.39 tolerated(0.15) possibly_damaging(0.89) TCGA-EE-A17X-06 14 59798092 59798092 C T DAAM1 Missense_Mutation p.P576S 0.40 tolerated(0.33) unknown(0) TCGA-EE-A17X-06 14 60063415 60063415 C T RTN1 3'UTR 0.36 TCGA-EE-A17X-06 14 62536415 62536415 G A SYT16 Silent p.Q206Q 0.42 TCGA-EE-A17X-06 14 62551057 62551057 G A SYT16 Missense_Mutation p.M526I 0.50 tolerated(0.38) benign(0.004) TCGA-EE-A17X-06 14 64608751 64608751 C T SYNE2 Missense_Mutation p.S5084F 0.55 possibly_damaging(0.739) TCGA-EE-A17X-06 14 68934942 68934942 C T RAD51B Silent p.I337I 0.39 TCGA-EE-A17X-06 14 71444066 71444066 G A PCNX Missense_Mutation p.E338K 0.44 tolerated_low_confidence(0.77) benign(0.001) TCGA-EE-A17X-06 14 73580994 73580994 G A RBM25 Missense_Mutation p.V798I 0.31 benign(0.299) TCGA-EE-A17X-06 14 73725746 73725746 C T PAPLN Missense_Mutation p.P536S 0.47 tolerated(0.1) benign(0.343) TCGA-EE-A17X-06 14 73989186 73989186 C T HEATR4 Missense_Mutation p.R224Q 0.49 tolerated(0.62) benign(0.001) TCGA-EE-A17X-06 14 77294698 77294698 C T C14orf166B Silent p.S51S 0.50 TCGA-EE-A17X-06 14 77732563 77732563 C T NGB 3'UTR 0.43 TCGA-EE-A17X-06 14 88792909 88792909 C T KCNK10 5'Flank 0.30 TCGA-EE-A17X-06 14 92055895 92055895 C T CATSPERB Missense_Mutation p.R980K 0.37 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A17X-06 14 94088518 94088518 G A UNC79 Missense_Mutation p.E1470K 0.44 deleterious_low_confidence(0) benign(0.318) TCGA-EE-A17X-06 14 94780716 94780716 G A SERPINA6 Silent p.L90L 0.39 TCGA-EE-A17X-06 14 95081325 95081325 T A SERPINA3 Missense_Mutation p.Y183N 0.39 deleterious(0) probably_damaging(0.983) TCGA-EE-A17X-06 14 96757148 96757148 C T ATG2B Intron 0.42 TCGA-EE-A17X-06 14 99641844 99641844 G A BCL11B Silent p.I443I 0.39 TCGA-EE-A17X-06 14 99879203 99879203 G A SETD3 Intron 0.39 TCGA-EE-A17X-06 15 25335008 25335008 C T SNORD116-23 5'Flank 0.57 TCGA-EE-A17X-06 15 25616380 25616380 G A UBE3A Missense_Mutation p.P317L 0.51 deleterious(0) probably_damaging(0.992) TCGA-EE-A17X-06 15 31779660 31779660 C T OTUD7A Silent p.L420L 0.25 TCGA-EE-A17X-06 15 37184640 37184640 C T MEIS2 Missense_Mutation p.D390N 0.39 deleterious_low_confidence(0.01) benign(0.025) TCGA-EE-A17X-06 15 41372096 41372096 G A INO80 Missense_Mutation p.H312Y 0.39 tolerated(0.85) benign(0.267) TCGA-EE-A17X-06 15 41562787 41562787 G A CHP1 Missense_Mutation p.E128K 0.42 deleterious(0.01) benign(0.052) TCGA-EE-A17X-06 15 42019410 42019410 C T MGA Nonsense_Mutation p.R1155* 0.50 TCGA-EE-A17X-06 15 42041983 42041983 C T MGA Nonsense_Mutation p.Q2060* 0.40 TCGA-EE-A17X-06 15 43045282 43045282 G A TTBK2 Missense_Mutation p.P721L 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A17X-06 15 43045283 43045283 G T TTBK2 Missense_Mutation p.P721T 0.36 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A17X-06 15 45386440 45386440 G A DUOX2 Missense_Mutation p.P1519S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 15 50215660 50215660 A G ATP8B4 Silent p.Y558Y 0.38 TCGA-EE-A17X-06 15 63127947 63127947 C T TLN2 Silent p.I2380I 0.36 TCGA-EE-A17X-06 15 64967026 64967026 C T ZNF609 Missense_Mutation p.P658L 0.39 deleterious(0.04) probably_damaging(0.985) TCGA-EE-A17X-06 15 65116064 65116064 C T PIF1 Silent p.E157E 0.31 TCGA-EE-A17X-06 15 65350917 65350917 G A RASL12 Silent p.A91A 0.33 TCGA-EE-A17X-06 15 65628235 65628235 G A IGDCC3 Missense_Mutation p.R157C 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 15 71256138 71256138 C T LRRC49 Missense_Mutation p.S268F 0.48 tolerated(0.21) benign(0.121) TCGA-EE-A17X-06 15 74290467 74290467 G A PML Silent p.S84S 0.51 TCGA-EE-A17X-06 15 78453956 78453956 C T IDH3A Missense_Mutation p.P108L 0.28 tolerated(0.07) benign(0.012) TCGA-EE-A17X-06 15 80473403 80473403 C T FAH Missense_Mutation p.S361F 0.51 deleterious(0) probably_damaging(0.982) TCGA-EE-A17X-06 15 83226583 83226583 G A CPEB1 Missense_Mutation p.S178F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 15 85098251 85098251 G A UBE2Q2P1 RNA 0.36 TCGA-EE-A17X-06 15 85370756 85370756 C T ALPK3 Missense_Mutation p.T277I 0.37 tolerated(0.05) benign(0.245) TCGA-EE-A17X-06 15 89422255 89422255 G A HAPLN3 Missense_Mutation p.P247S 0.50 tolerated(0.39) benign(0.023) TCGA-EE-A17X-06 15 89449929 89449929 C T MFGE8 Silent p.K156K 0.50 TCGA-EE-A17X-06 15 98995102 98995102 C T FAM169B Missense_Mutation p.E108K 0.44 tolerated(0.16) benign(0.037) TCGA-EE-A17X-06 16 10273906 10273906 G A GRIN2A Silent p.F121F 0.44 TCGA-EE-A17X-06 16 1306943 1306943 C T TPSD1 Silent p.L134L 0.51 TCGA-EE-A17X-06 16 1719012 1719012 C T CRAMP1L Silent p.V1115V 0.60 TCGA-EE-A17X-06 16 2048188 2048188 G A ZNF598 3'UTR 0.39 TCGA-EE-A17X-06 16 20927004 20927004 G A LYRM1 Missense_Mutation p.E43K 0.30 deleterious(0.02) benign(0.3) TCGA-EE-A17X-06 16 2282530 2282530 C T E4F1 Missense_Mutation p.S228F 0.57 deleterious(0) probably_damaging(0.982) TCGA-EE-A17X-06 16 23226887 23226887 C T SCNN1G 3'UTR 0.27 TCGA-EE-A17X-06 16 2946401 2946401 C T FLYWCH2 5'UTR 0.33 TCGA-EE-A17X-06 16 30002663 30002663 C T TAOK2 3'Flank 0.52 TCGA-EE-A17X-06 16 30721875 30721875 C T SRCAP Intron 0.35 TCGA-EE-A17X-06 16 3119100 3119100 T C IL32 Missense_Mutation p.F104S 0.26 tolerated(0.2) benign(0.01) TCGA-EE-A17X-06 16 3168912 3168912 C T ZNF205 Missense_Mutation p.P164L 0.47 deleterious(0) probably_damaging(0.92) TCGA-EE-A17X-06 16 4242246 4242246 C T SRL Missense_Mutation p.G444S 0.35 tolerated(0.41) benign(0.032) TCGA-EE-A17X-06 16 4242767 4242767 C T SRL Missense_Mutation p.G270E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 16 4242768 4242768 C T SRL Missense_Mutation p.G270R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 16 4476020 4476020 C T DNAJA3 Silent p.P46P 0.50 TCGA-EE-A17X-06 16 48167670 48167670 G A ABCC12 Silent p.I352I 0.52 TCGA-EE-A17X-06 16 51174131 51174131 C T SALL1 Missense_Mutation p.E668K 0.45 deleterious(0) possibly_damaging(0.591) TCGA-EE-A17X-06 16 53279686 53279686 A T CHD9 Silent p.G1126G 0.56 TCGA-EE-A17X-06 16 57100492 57100492 C T NLRC5 Missense_Mutation p.R1430C 0.44 tolerated(0.3) benign(0.006) TCGA-EE-A17X-06 16 58031661 58031661 G A ZNF319 Missense_Mutation p.A170V 0.42 tolerated(0.16) benign(0.067) TCGA-EE-A17X-06 16 58568274 58568274 G A CNOT1 Missense_Mutation p.T1891I 0.52 deleterious(0) benign(0.165) TCGA-EE-A17X-06 16 58585169 58585169 A T CNOT1 Missense_Mutation p.I1070N 0.51 deleterious(0) benign(0.157) TCGA-EE-A17X-06 16 64982634 64982634 G A CDH11 Intron 0.33 TCGA-EE-A17X-06 16 66948226 66948226 C T CDH16 Missense_Mutation p.A225T 0.42 tolerated(0.43) benign(0.277) TCGA-EE-A17X-06 16 67006373 67006373 G A CES3 Missense_Mutation p.G469E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 16 67006383 67006383 C T CES3 Silent p.F472F 0.38 TCGA-EE-A17X-06 16 67763685 67763685 G T RANBP10 Silent p.R349R 0.47 TCGA-EE-A17X-06 16 69788587 69788587 C A NOB1 Nonsense_Mutation p.E36* 0.50 TCGA-EE-A17X-06 16 71012907 71012907 C T HYDIN Silent p.R1516R 0.28 TCGA-EE-A17X-06 16 71015379 71015379 G A HYDIN Silent p.I1475I 0.32 TCGA-EE-A17X-06 16 72164554 72164554 C T PMFBP1 Silent p.R505R 0.37 TCGA-EE-A17X-06 16 72828134 72828134 G A ZFHX3 Missense_Mutation p.P2816L 0.50 unknown(0) TCGA-EE-A17X-06 16 75276498 75276498 G A BCAR1 Missense_Mutation p.P214L 0.50 deleterious(0.02) benign(0.053) TCGA-EE-A17X-06 16 77359862 77359862 C T ADAMTS18 Missense_Mutation p.E645K 0.41 tolerated(0.77) benign(0.001) TCGA-EE-A17X-06 16 84189324 84189324 C T DNAAF1 Silent p.I237I 0.38 TCGA-EE-A17X-06 16 85100992 85100992 G A KIAA0513 Silent p.K105K 0.52 TCGA-EE-A17X-06 16 86601502 86601502 C T FOXC2 Silent p.P187P 0.41 TCGA-EE-A17X-06 16 86601503 86601503 C T FOXC2 Missense_Mutation p.P188S 0.40 tolerated(0.4) benign(0.001) TCGA-EE-A17X-06 16 89199645 89199645 C T ACSF3 Silent p.F447F 0.44 TCGA-EE-A17X-06 17 10263492 10263492 C T MYH13 Silent p.Q173Q 0.48 TCGA-EE-A17X-06 17 10353813 10353813 C T MYH4 Missense_Mutation p.E1380K 0.35 deleterious(0) benign(0.125) TCGA-EE-A17X-06 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.39 tolerated(0.12) benign(0.252) TCGA-EE-A17X-06 17 10443353 10443353 C T MYH2 Missense_Mutation p.E347K 0.39 deleterious(0) benign(0.419) TCGA-EE-A17X-06 17 10533745 10533745 C T MYH3 Missense_Mutation p.E1773K 0.26 deleterious(0.03) benign(0.093) TCGA-EE-A17X-06 17 11713572 11713572 G A DNAH9 Missense_Mutation p.A2865T 0.41 possibly_damaging(0.703) TCGA-EE-A17X-06 17 12883419 12883419 G A ARHGAP44 Missense_Mutation p.G603E 0.22 tolerated_low_confidence(0.07) benign(0.007) TCGA-EE-A17X-06 17 18654336 18654336 G A FBXW10 Silent p.V364V 0.36 TCGA-EE-A17X-06 17 18708931 18708931 C T TVP23B 3'UTR 0.58 TCGA-EE-A17X-06 17 1943100 1943100 C T DPH1 Silent p.P249P 0.41 TCGA-EE-A17X-06 17 26519196 26519196 C T NLK Missense_Mutation p.L496F 0.50 deleterious(0) probably_damaging(0.987) TCGA-EE-A17X-06 17 27437624 27437624 G A MYO18A Silent p.L973L 0.50 TCGA-EE-A17X-06 17 27899364 27899364 C T TP53I13 Missense_Mutation p.P240S 0.46 tolerated(0.2) benign(0.012) TCGA-EE-A17X-06 17 28537620 28537620 G A SLC6A4 Silent p.F454F 0.45 TCGA-EE-A17X-06 17 29483086 29483086 A T NF1 Missense_Mutation p.Y49F 0.29 tolerated(0.15) probably_damaging(0.931) TCGA-EE-A17X-06 17 29483087 29483087 C T NF1 Silent p.Y49Y 0.31 TCGA-EE-A17X-06 17 32483160 32483160 G A ASIC2 Missense_Mutation p.P131L 0.45 tolerated(0.07) benign(0.048) TCGA-EE-A17X-06 17 33513465 33513465 C T UNC45B Silent p.L895L 0.44 TCGA-EE-A17X-06 17 33772081 33772081 G A SLFN13 Missense_Mutation p.P207S 0.45 tolerated(0.47) benign(0.038) TCGA-EE-A17X-06 17 33806595 33806595 C T SLFN12L Missense_Mutation p.E212K 0.32 deleterious(0) probably_damaging(0.919) TCGA-EE-A17X-06 17 3397703 3397703 C T ASPA Missense_Mutation p.P232S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 17 36288236 36288236 G A TBC1D3F Missense_Mutation p.G108S 0.09 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A17X-06 17 36352450 36352450 C T RP11-1407O15.2 Missense_Mutation p.R446Q 0.09 TCGA-EE-A17X-06 17 38854567 38854567 C T KRT24 Silent p.K500K 0.25 TCGA-EE-A17X-06 17 38911513 38911513 C T KRT25 Missense_Mutation p.R4Q 0.38 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A17X-06 17 39122874 39122874 G A KRT39 Missense_Mutation p.R79C 0.48 tolerated(0.33) benign(0) TCGA-EE-A17X-06 17 39140424 39140424 G A KRT40 Silent p.L34L 0.56 TCGA-EE-A17X-06 17 39637025 39637025 C T KRT35 Missense_Mutation p.A109T 0.34 deleterious(0.01) possibly_damaging(0.817) TCGA-EE-A17X-06 17 39728108 39728108 C T KRT9 Missense_Mutation p.R46Q 0.33 tolerated_low_confidence(0.05) unknown(0) TCGA-EE-A17X-06 17 40178933 40178933 G A NKIRAS2 3'Flank 0.41 TCGA-EE-A17X-06 17 41004371 41004371 C T AOC3 Silent p.F337F 0.49 TCGA-EE-A17X-06 17 42849142 42849142 G A ADAM11 Silent p.G162G 0.43 TCGA-EE-A17X-06 17 43347910 43347910 A G MAP3K14-AS1 3'Flank 0.35 TCGA-EE-A17X-06 17 45669398 45669398 G A NPEPPS Missense_Mutation p.R446Q 0.12 deleterious(0) possibly_damaging(0.889) TCGA-EE-A17X-06 17 51902255 51902255 G A KIF2B Missense_Mutation p.E621K 0.45 tolerated(0.28) benign(0.002) TCGA-EE-A17X-06 17 55187450 55187450 C T AKAP1 Silent p.F593F 0.48 TCGA-EE-A17X-06 17 62487001 62487001 G A POLG2 Missense_Mutation p.P294L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 17 6554934 6554934 C T MED31 5'UTR 0.60 TCGA-EE-A17X-06 17 6589655 6589655 C T SLC13A5 Silent p.V526V 0.40 TCGA-EE-A17X-06 17 65914854 65914854 C T BPTF Silent p.S1776S 0.37 TCGA-EE-A17X-06 17 73059116 73059116 C T KCTD2 Missense_Mutation p.L256F 0.44 deleterious(0.04) benign(0.179) TCGA-EE-A17X-06 17 74562237 74562237 G A ST6GALNAC2 Silent p.A358A 0.56 TCGA-EE-A17X-06 17 74621517 74621517 G A ST6GALNAC1 Silent p.N566N 0.39 TCGA-EE-A17X-06 17 75196569 75196569 C T SEC14L1 Missense_Mutation p.P275S 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 17 76455103 76455103 G A DNAH17 Missense_Mutation p.R3267W 0.41 possibly_damaging(0.764) TCGA-EE-A17X-06 17 76455104 76455104 G A DNAH17 Silent p.S3266S 0.42 TCGA-EE-A17X-06 17 76528651 76528651 C T DNAH17 Silent p.G1009G 0.75 TCGA-EE-A17X-06 17 79219721 79219721 C T SLC38A10 Missense_Mutation p.E999K 0.44 tolerated(0.27) benign(0) TCGA-EE-A17X-06 17 8006749 8006749 G A ALOXE3 Silent p.T748T 0.51 TCGA-EE-A17X-06 17 8726794 8726794 G A PIK3R6 Silent p.S512S 0.64 TCGA-EE-A17X-06 17 8726803 8726803 C T PIK3R6 Silent p.L509L 0.40 TCGA-EE-A17X-06 17 9680581 9680581 G A DHRS7C Missense_Mutation p.S168F 0.35 deleterious(0) probably_damaging(0.971) TCGA-EE-A17X-06 18 13885332 13885332 G A MC2R Silent p.F62F 0.42 TCGA-EE-A17X-06 18 14478346 14478346 G A CXADRP3 RNA 0.55 TCGA-EE-A17X-06 18 23759033 23759033 T C PSMA8 Missense_Mutation p.V206A 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A17X-06 18 2718389 2718389 A T SMCHD1 Silent p.A805A 0.42 TCGA-EE-A17X-06 18 28913665 28913665 C T DSG1 Silent p.I266I 0.38 TCGA-EE-A17X-06 18 28916319 28916319 C T DSG1 Silent p.P336P 0.29 TCGA-EE-A17X-06 18 3090697 3090697 C T MYOM1 Missense_Mutation p.G1323E 0.48 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A17X-06 18 32459604 32459604 G A DTNA Missense_Mutation p.A608T 0.48 tolerated_low_confidence(0.62) benign(0.011) TCGA-EE-A17X-06 18 32822433 32822433 G A ZNF397 5'UTR 0.39 TCGA-EE-A17X-06 18 43311018 43311018 C T SLC14A1 Missense_Mutation p.R120W 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 18 47769285 47769285 G A CCDC11 Nonsense_Mutation p.Q400* 0.45 TCGA-EE-A17X-06 18 51025821 51025821 C T DCC Missense_Mutation p.P1351L 0.43 deleterious(0) probably_damaging(0.982) TCGA-EE-A17X-06 18 51025846 51025846 G A DCC Silent p.P1359P 0.39 TCGA-EE-A17X-06 18 59895792 59895792 T A KIAA1468 Missense_Mutation p.L470Q 0.42 tolerated(0.59) benign(0.005) TCGA-EE-A17X-06 18 60645673 60645673 C T PHLPP1 Missense_Mutation p.A1388V 0.59 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A17X-06 18 61324524 61324524 C T SERPINB3 Missense_Mutation p.E198K 0.58 tolerated(0.15) benign(0.285) TCGA-EE-A17X-06 19 10089817 10089817 C T COL5A3 Silent p.E955E 0.49 TCGA-EE-A17X-06 19 10200677 10200677 C T C19orf66 Missense_Mutation p.S113F 0.59 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A17X-06 19 10433932 10433932 C A RAVER1 Nonsense_Mutation p.G340* 0.33 TCGA-EE-A17X-06 19 11489371 11489371 A G EPOR Missense_Mutation p.F304S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 19 11832982 11832982 G A ZNF823 Missense_Mutation p.S456F 0.42 tolerated(0.08) benign(0.002) TCGA-EE-A17X-06 19 11943726 11943726 C T ZNF440 Missense_Mutation p.P579S 0.36 tolerated(0.13) benign(0.013) TCGA-EE-A17X-06 19 14208443 14208443 C A PRKACA Missense_Mutation p.W197L 0.40 deleterious(0.01) benign(0.344) TCGA-EE-A17X-06 19 14269965 14269965 C T LPHN1 Missense_Mutation p.E701K 0.36 tolerated(0.33) benign(0.102) TCGA-EE-A17X-06 19 14269966 14269966 C T LPHN1 Silent p.E700E 0.36 TCGA-EE-A17X-06 19 15366341 15366341 T A BRD4 Missense_Mutation p.D605V 0.44 possibly_damaging(0.804) TCGA-EE-A17X-06 19 15839113 15839113 C T OR10H2 Missense_Mutation p.S87F 0.22 tolerated(0.07) benign(0.02) TCGA-EE-A17X-06 19 15989695 15989695 C G CYP4F2 Silent p.A483A 0.27 TCGA-EE-A17X-06 19 16280506 16280506 C T CIB3 Missense_Mutation p.D45N 0.45 tolerated(0.41) possibly_damaging(0.449) TCGA-EE-A17X-06 19 16553012 16553014 ACG CA EPS15L1 Frame_Shift_Del p.S17Lfs*27 0.28 TCGA-EE-A17X-06 19 16908590 16908590 C T NWD1 Missense_Mutation p.R1118C 0.45 tolerated(0.06) benign(0.005) TCGA-EE-A17X-06 19 16952673 16952673 C T SIN3B Missense_Mutation p.S159F 0.51 deleterious(0.02) benign(0.167) TCGA-EE-A17X-06 19 17373466 17373466 C T USHBP1 Silent p.R179R 0.43 TCGA-EE-A17X-06 19 17488112 17488112 C T PLVAP 5'UTR 0.57 TCGA-EE-A17X-06 19 19625545 19625545 G A TSSK6 Missense_Mutation p.P231L 0.34 tolerated(0.08) benign(0.341) TCGA-EE-A17X-06 19 20117476 20117476 G A ZNF682 Missense_Mutation p.H279Y 0.46 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A17X-06 19 21300609 21300609 C T ZNF714 Missense_Mutation p.S380F 0.41 tolerated(0.27) probably_damaging(0.992) TCGA-EE-A17X-06 19 21607153 21607153 G T ZNF493 Missense_Mutation p.K564N 0.46 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A17X-06 19 22941701 22941701 C T ZNF99 Missense_Mutation p.G337E 0.47 deleterious(0.05) probably_damaging(0.993) TCGA-EE-A17X-06 19 30104870 30104870 C T POP4 Missense_Mutation p.R173C 0.53 deleterious(0.04) benign(0.035) TCGA-EE-A17X-06 19 31039364 31039364 C T ZNF536 Silent p.S946S 0.48 TCGA-EE-A17X-06 19 33698215 33698215 C T LRP3 Missense_Mutation p.P683S 0.31 tolerated_low_confidence(0.2) benign(0.015) TCGA-EE-A17X-06 19 35251394 35251394 G A ZNF599 Silent p.F104F 0.50 TCGA-EE-A17X-06 19 3738999 3738999 G A TJP3 Missense_Mutation p.D509N 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A17X-06 19 38709272 38709272 G A DPF1 Missense_Mutation p.L180F 0.43 tolerated(0.71) benign(0.382) TCGA-EE-A17X-06 19 38709273 38709273 G A DPF1 Silent p.D179D 0.45 TCGA-EE-A17X-06 19 40903777 40903777 G A PRX Missense_Mutation p.P161L 0.46 deleterious(0) possibly_damaging(0.851) TCGA-EE-A17X-06 19 41600158 41600158 C T CYP2A13 Missense_Mutation p.H328Y 0.47 tolerated(0.1) benign(0.031) TCGA-EE-A17X-06 19 42315312 42315312 G A CEACAM3 3'UTR 0.39 TCGA-EE-A17X-06 19 43237134 43237134 G A PSG3 Missense_Mutation p.P171S 0.38 deleterious(0.04) possibly_damaging(0.483) TCGA-EE-A17X-06 19 43428829 43428829 C T PSG7 3'UTR 0.17 TCGA-EE-A17X-06 19 43772076 43772076 C T PSG9 Missense_Mutation p.G97E 0.37 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A17X-06 19 44590447 44590447 C T ZNF284 Silent p.S272S 0.44 TCGA-EE-A17X-06 19 44932600 44932600 G A ZNF229 Missense_Mutation p.H786Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 19 45719416 45719416 G A EXOC3L2 Missense_Mutation p.H286Y 0.40 deleterious(0) possibly_damaging(0.828) TCGA-EE-A17X-06 19 45719417 45719417 G A EXOC3L2 Silent p.P285P 0.40 TCGA-EE-A17X-06 19 46627345 46627345 G A IGFL3 Missense_Mutation p.P50S 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A17X-06 19 49001418 49001418 C T LMTK3 Missense_Mutation p.E999K 0.47 unknown(0) TCGA-EE-A17X-06 19 49448200 49448200 G A DHDH 3'UTR 0.34 TCGA-EE-A17X-06 19 50247522 50247522 G A TSKS Missense_Mutation p.R443W 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 19 50880885 50880885 C T NR1H2 Missense_Mutation p.S8F 0.41 deleterious(0.01) unknown(0) TCGA-EE-A17X-06 19 51140704 51140704 G A SYT3 5'UTR 0.59 TCGA-EE-A17X-06 19 51274067 51274067 C T GPR32 Silent p.F70F 0.48 TCGA-EE-A17X-06 19 51518160 51518160 G A KLK10 Missense_Mutation p.L243F 0.46 deleterious(0) possibly_damaging(0.752) TCGA-EE-A17X-06 19 51631270 51631270 C T SIGLEC9 Silent p.F360F 0.52 TCGA-EE-A17X-06 19 51994858 51994858 C T SIGLEC12 3'UTR 0.42 TCGA-EE-A17X-06 19 51995067 51995067 G A SIGLEC12 Missense_Mutation p.S539F 0.55 tolerated(0.33) possibly_damaging(0.898) TCGA-EE-A17X-06 19 52249604 52249604 G A FPR1 Missense_Mutation p.S215F 0.39 tolerated(0.1) benign(0.049) TCGA-EE-A17X-06 19 53667831 53667831 G A ZNF665 Missense_Mutation p.R638C 0.36 tolerated(0.17) possibly_damaging(0.698) TCGA-EE-A17X-06 19 53770607 53770607 G A VN1R4 Silent p.F104F 0.37 TCGA-EE-A17X-06 19 53889725 53889725 C T ZNF525 3'Flank 0.55 TCGA-EE-A17X-06 19 53959621 53959621 C T ZNF761 RNA 0.31 TCGA-EE-A17X-06 19 54567132 54567132 C T VSTM1 5'UTR 0.30 TCGA-EE-A17X-06 19 55220543 55220543 G A AC098784.2 3'Flank 0.33 TCGA-EE-A17X-06 19 55363668 55363668 C T KIR3DL2 Missense_Mutation p.R96W 0.37 tolerated(0.18) benign(0.093) TCGA-EE-A17X-06 19 55401310 55401310 C T FCAR 3'UTR 0.48 TCGA-EE-A17X-06 19 56321202 56321202 G A NLRP11 Silent p.L258L 0.45 TCGA-EE-A17X-06 19 56407388 56407388 C T NLRP13 Missense_Mutation p.E1019K 0.42 tolerated(0.12) possibly_damaging(0.551) TCGA-EE-A17X-06 19 56515139 56515139 C T NLRP5 Silent p.F40F 0.44 TCGA-EE-A17X-06 19 56896237 56896237 C T ZNF582 Silent p.K183K 0.43 TCGA-EE-A17X-06 19 571517 571517 G A BSG 5'Flank 0.20 TCGA-EE-A17X-06 19 57641439 57641439 C T USP29 Missense_Mutation p.P466S 0.44 tolerated(0.09) benign(0.287) TCGA-EE-A17X-06 19 58565116 58565116 C T ZSCAN1 Silent p.I308I 0.43 TCGA-EE-A17X-06 19 59022207 59022207 C T SLC27A5 Missense_Mutation p.G260E 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 19 7267510 7267510 G A INSR Silent p.S166S 0.41 TCGA-EE-A17X-06 19 757502 757502 G A MISP Missense_Mutation p.V186I 0.40 tolerated(0.41) benign(0.2) TCGA-EE-A17X-06 19 9064001 9064001 G A MUC16 Silent p.F7815F 0.46 TCGA-EE-A17X-06 19 9065029 9065029 G A MUC16 Missense_Mutation p.P7473S 0.39 unknown(0) TCGA-EE-A17X-06 19 9075173 9075173 C T MUC16 Missense_Mutation p.M4091I 0.51 unknown(0) TCGA-EE-A17X-06 19 9077809 9077809 C T MUC16 Missense_Mutation p.E3213K 0.46 unknown(0) TCGA-EE-A17X-06 19 9361804 9361804 G A OR7E24 Missense_Mutation p.E29K 0.44 deleterious(0.04) benign(0.066) TCGA-EE-A17X-06 1 10195157 10195157 C T UBE4B Missense_Mutation p.H713Y 0.70 tolerated(0.08) benign(0.261) TCGA-EE-A17X-06 1 103491381 103491381 G A COL11A1 Intron 0.36 TCGA-EE-A17X-06 1 110141570 110141570 C A GNAI3 3'Flank 0.40 TCGA-EE-A17X-06 1 11106674 11106674 G A MASP2 Silent p.F117F 0.93 TCGA-EE-A17X-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.88 deleterious(0.01) benign(0.045) TCGA-EE-A17X-06 1 116228028 116228028 C T VANGL1 Silent p.F398F 0.89 TCGA-EE-A17X-06 1 116562312 116562312 G A SLC22A15 Missense_Mutation p.G137E 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 1 118165614 118165614 C T FAM46C Missense_Mutation p.P42S 0.85 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A17X-06 1 118424453 118424453 G A GDAP2 Missense_Mutation p.R432C 0.87 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A17X-06 1 119929351 119929351 G A HAO2 Missense_Mutation p.G223E 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 1 12711318 12711318 C T AADACL4 Silent p.I115I 0.85 TCGA-EE-A17X-06 1 12785267 12785267 C T AADACL3 Silent p.S119S 0.41 TCGA-EE-A17X-06 1 149783702 149783702 G A HIST2H2BF Silent p.A59A 0.40 TCGA-EE-A17X-06 1 150192908 150192908 G A ANP32E 3'UTR 0.38 TCGA-EE-A17X-06 1 151751311 151751311 C T TDRKH Missense_Mutation p.E245K 0.46 tolerated(0.83) benign(0.001) TCGA-EE-A17X-06 1 152058877 152058877 C T TCHHL1 Silent p.Q427Q 0.43 TCGA-EE-A17X-06 1 152127305 152127305 C T RPTN Missense_Mutation p.R757Q 0.43 tolerated(1) benign(0.001) TCGA-EE-A17X-06 1 152128157 152128157 G A RPTN Missense_Mutation p.S473F 0.41 tolerated(0.08) benign(0.071) TCGA-EE-A17X-06 1 152659456 152659456 C T LCE2B Missense_Mutation p.S46F 0.41 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A17X-06 1 153303307 153303307 C T PGLYRP4 Missense_Mutation p.R353Q 0.45 tolerated(0.42) benign(0.001) TCGA-EE-A17X-06 1 153800700 153800700 G A GATAD2B Missense_Mutation p.R42C 0.35 deleterious(0) probably_damaging(0.99) TCGA-EE-A17X-06 1 153998119 153998119 C T NUP210L Missense_Mutation p.E1341K 0.36 tolerated(1) benign(0.071) TCGA-EE-A17X-06 1 154002385 154002385 T A NUP210L Missense_Mutation p.E1281V 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 1 154002386 154002386 C T NUP210L Missense_Mutation p.E1281K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A17X-06 1 154108432 154108432 C T NUP210L Silent p.L289L 0.26 TCGA-EE-A17X-06 1 155220423 155220423 G A FAM189B Missense_Mutation p.P385L 0.38 deleterious(0) probably_damaging(0.991) TCGA-EE-A17X-06 1 155735348 155735348 G A GON4L Missense_Mutation p.P1306S 0.31 tolerated_low_confidence(0.16) probably_damaging(0.991) TCGA-EE-A17X-06 1 155742989 155742989 G A GON4L Missense_Mutation p.P788L 0.36 tolerated(0.05) possibly_damaging(0.904) TCGA-EE-A17X-06 1 156621460 156621460 G A BCAN Missense_Mutation p.E426K 0.47 tolerated(0.05) possibly_damaging(0.64) TCGA-EE-A17X-06 1 156640816 156640816 G T NES Missense_Mutation p.A1055D 0.53 deleterious(0.04) probably_damaging(0.959) TCGA-EE-A17X-06 1 156849090 156849090 G A NTRK1 Missense_Mutation p.G661E 0.44 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A17X-06 1 157803038 157803038 C T CD5L Missense_Mutation p.R328K 0.52 tolerated(0.06) probably_damaging(0.992) TCGA-EE-A17X-06 1 158262110 158262110 C T CD1C Missense_Mutation p.L189F 0.48 deleterious(0.02) benign(0.244) TCGA-EE-A17X-06 1 161200676 161200676 C T NR1I3 Missense_Mutation p.D291N 0.40 deleterious(0.01) benign(0.042) TCGA-EE-A17X-06 1 161496150 161496150 G A HSPA6 Missense_Mutation p.D568N 0.41 deleterious_low_confidence(0) benign(0.347) TCGA-EE-A17X-06 1 162487890 162487890 A G UHMK1 Splice_Site p.X342_splice 0.45 TCGA-EE-A17X-06 1 166927084 166927084 G A ILDR2 Nonsense_Mutation p.R101* 0.41 TCGA-EE-A17X-06 1 166927321 166927321 G A ILDR2 Nonsense_Mutation p.Q22* 0.38 TCGA-EE-A17X-06 1 167792263 167792263 T C ADCY10 Missense_Mutation p.D1384G 0.49 deleterious(0.01) possibly_damaging(0.881) TCGA-EE-A17X-06 1 16918441 16918441 G A NBPF1 Missense_Mutation p.P26S 0.16 tolerated(1) possibly_damaging(0.803) TCGA-EE-A17X-06 1 170688913 170688913 G A PRRX1 Silent p.R96R 0.38 TCGA-EE-A17X-06 1 172634863 172634863 G A FASLG Missense_Mutation p.E185K 0.50 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A17X-06 1 173176313 173176313 C T TNFSF4 Translation_Start_Site p.M1? 0.37 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A17X-06 1 173494046 173494046 G A SLC9C2 Missense_Mutation p.R796C 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A17X-06 1 177915597 177915597 G A SEC16B Missense_Mutation p.T578I 0.50 tolerated(0.07) possibly_damaging(0.783) TCGA-EE-A17X-06 1 178490247 178490247 C T TEX35 Intron 0.65 TCGA-EE-A17X-06 1 18152483 18152483 G A ACTL8 Silent p.K190K 0.89 TCGA-EE-A17X-06 1 182025636 182025636 A T ZNF648 Missense_Mutation p.F504I 0.41 deleterious(0) probably_damaging(0.962) TCGA-EE-A17X-06 1 183221673 183221673 G A NMNAT2 3'UTR 0.32 TCGA-EE-A17X-06 1 196757478 196757478 G A CFHR3 Missense_Mutation p.G188E 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A17X-06 1 196881899 196881899 G A CFHR4 Missense_Mutation p.E342K 0.31 tolerated(0.11) benign(0.141) TCGA-EE-A17X-06 1 200868693 200868693 G A C1orf106 Missense_Mutation p.E50K 0.47 tolerated(0.3) possibly_damaging(0.542) TCGA-EE-A17X-06 1 201190759 201190759 G A IGFN1 Silent p.T3362T 0.53 TCGA-EE-A17X-06 1 202097473 202097473 C T GPR37L1 Missense_Mutation p.T412I 0.47 deleterious(0) probably_damaging(0.943) TCGA-EE-A17X-06 1 207107923 207107923 G A PIGR Missense_Mutation p.A516V 0.35 tolerated(0.15) probably_damaging(0.959) TCGA-EE-A17X-06 1 207700144 207700144 G A CR1 Silent p.R311R 0.31 TCGA-EE-A17X-06 1 208234042 208234042 G A PLXNA2 Silent p.I909I 0.31 TCGA-EE-A17X-06 1 210415669 210415669 G A SERTAD4 Missense_Mutation p.G353E 0.37 tolerated(0.17) possibly_damaging(0.622) TCGA-EE-A17X-06 1 211545749 211545749 C T TRAF5 Missense_Mutation p.S460F 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 1 2125571 2125571 G A C1orf86 Missense_Mutation p.P22S 0.76 deleterious(0.02) unknown(0) TCGA-EE-A17X-06 1 214531261 214531261 G A PTPN14 3'UTR 0.31 TCGA-EE-A17X-06 1 217975134 217975134 C T SPATA17 Missense_Mutation p.P316L 0.52 tolerated(0.33) benign(0.104) TCGA-EE-A17X-06 1 222920392 222920392 G A FAM177B Nonsense_Mutation p.W70* 0.41 TCGA-EE-A17X-06 1 227192753 227192753 G A CDC42BPA Silent p.I1604I 0.39 TCGA-EE-A17X-06 1 231362502 231362502 C T C1orf131 Missense_Mutation p.E226K 0.34 tolerated(0.41) benign(0.125) TCGA-EE-A17X-06 1 231362503 231362503 C T C1orf131 Silent p.K225K 0.33 TCGA-EE-A17X-06 1 236212001 236212001 G A NID1 Nonsense_Mutation p.Q172* 0.39 TCGA-EE-A17X-06 1 237947970 237947970 G A RYR2 Missense_Mutation p.E4320K 0.42 probably_damaging(0.996) TCGA-EE-A17X-06 1 238090756 238090756 G A RP11-193H5.1 RNA 0.50 TCGA-EE-A17X-06 1 247902051 247902051 C T OR14K1 Silent p.L45L 0.43 TCGA-EE-A17X-06 1 247902828 247902828 G A OR14K1 Nonsense_Mutation p.W304* 0.45 TCGA-EE-A17X-06 1 247978344 247978344 C T OR14A16 Missense_Mutation p.E230K 0.53 tolerated(0.05) benign(0.05) TCGA-EE-A17X-06 1 248201969 248201969 C T OR2L2 Missense_Mutation p.R134C 0.40 tolerated(0.1) benign(0.009) TCGA-EE-A17X-06 1 248512159 248512159 C T OR14C36 Missense_Mutation p.S28F 0.41 tolerated(0.12) benign(0.001) TCGA-EE-A17X-06 1 248525497 248525497 G A OR2T4 Silent p.E205E 0.39 TCGA-EE-A17X-06 1 2494649 2494649 C G TNFRSF14 Missense_Mutation p.D263E 0.87 deleterious(0.03) benign(0.096) TCGA-EE-A17X-06 1 26877903 26877903 G A RPS6KA1 Missense_Mutation p.R117Q 0.80 deleterious(0.05) probably_damaging(0.971) TCGA-EE-A17X-06 1 33960610 33960610 C T ZSCAN20 Missense_Mutation p.A889V 0.91 tolerated(0.25) probably_damaging(0.95) TCGA-EE-A17X-06 1 34049348 34049348 G A CSMD2 Silent p.F2380F 0.44 TCGA-EE-A17X-06 1 34076734 34076734 G A CSMD2 Missense_Mutation p.P2044S 0.90 deleterious(0) probably_damaging(0.969) TCGA-EE-A17X-06 1 43392771 43392771 G T SLC2A1 Missense_Mutation p.Q474K 0.44 tolerated(0.8) benign(0.021) TCGA-EE-A17X-06 1 6209357 6209357 C T CHD5 Silent p.L370L 0.30 TCGA-EE-A17X-06 1 69729 69729 C T OR4F5 Silent p.I213I 0.19 TCGA-EE-A17X-06 1 74905264 74905264 G A TNNI3K Missense_Mutation p.E758K 0.91 deleterious(0) benign(0.43) TCGA-EE-A17X-06 1 75055579 75055579 C T C1orf173 Missense_Mutation p.E638K 0.42 tolerated(0.17) benign(0.041) TCGA-EE-A17X-06 1 75707698 75707698 G A SLC44A5 Missense_Mutation p.P174S 0.33 deleterious(0.01) possibly_damaging(0.45) TCGA-EE-A17X-06 20 11903873 11903873 C T BTBD3 Silent p.H376H 0.37 TCGA-EE-A17X-06 20 11903874 11903874 C T BTBD3 Missense_Mutation p.R377C 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A17X-06 20 1285634 1285634 G A SNPH Missense_Mutation p.E141K 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A17X-06 20 1459118 1459118 C T SIRPB2 Missense_Mutation p.G196R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 20 18142540 18142540 A T CSRP2BP Missense_Mutation p.E253D 0.38 tolerated(0.06) benign(0.378) TCGA-EE-A17X-06 20 21492579 21492579 G A NKX2-2 Silent p.A268A 0.42 TCGA-EE-A17X-06 20 23472300 23472300 G A CST8 5'UTR 0.45 TCGA-EE-A17X-06 20 25481560 25481560 G A NINL Silent p.D316D 0.45 TCGA-EE-A17X-06 20 25657189 25657189 G A ZNF337 Silent p.F245F 0.40 TCGA-EE-A17X-06 20 29623129 29623129 G A FRG1B Intron 0.04 TCGA-EE-A17X-06 20 32661652 32661652 C T RALY Silent p.Y119Y 0.39 TCGA-EE-A17X-06 20 32661653 32661653 C T RALY Missense_Mutation p.R120W 0.40 deleterious(0) benign(0.008) TCGA-EE-A17X-06 20 34571961 34571961 C T CNBD2 Silent p.F155F 0.47 TCGA-EE-A17X-06 20 39316829 39316829 A T MAFB Missense_Mutation p.V221E 0.29 deleterious(0) probably_damaging(0.992) TCGA-EE-A17X-06 20 39316830 39316830 C T MAFB Missense_Mutation p.V221M 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A17X-06 20 43053087 43053087 C A HNF4A Intron 0.09 TCGA-EE-A17X-06 20 43247052 43247052 C T PKIG 3'UTR 0.34 TCGA-EE-A17X-06 20 43247053 43247053 C T PKIG 3'UTR 0.37 TCGA-EE-A17X-06 20 43837359 43837359 G A SEMG1 3'UTR 0.48 TCGA-EE-A17X-06 20 44841652 44841652 G A CDH22 Silent p.A338A 0.30 TCGA-EE-A17X-06 20 45000553 45000553 G A ELMO2 Missense_Mutation p.S491F 0.45 deleterious(0) probably_damaging(0.91) TCGA-EE-A17X-06 20 45354326 45354326 C T SLC2A10 Silent p.S217S 0.45 TCGA-EE-A17X-06 20 48129705 48129705 C T PTGIS Missense_Mutation p.R373Q 0.43 tolerated(0.53) benign(0.049) TCGA-EE-A17X-06 20 50418824 50418824 C T SALL4 Missense_Mutation p.E42K 0.44 tolerated(0.17) benign(0.002) TCGA-EE-A17X-06 20 51871597 51871597 G A TSHZ2 Missense_Mutation p.G534R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 20 51871598 51871598 G A TSHZ2 Missense_Mutation p.G534E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 20 51871782 51871782 C T TSHZ2 Silent p.A595A 0.52 TCGA-EE-A17X-06 20 54824280 54824280 C T MC3R Silent p.S127S 0.41 TCGA-EE-A17X-06 20 54824281 54824281 C T MC3R Silent p.L128L 0.41 TCGA-EE-A17X-06 20 57768375 57768375 C T ZNF831 Silent p.P767P 0.34 TCGA-EE-A17X-06 20 6022301 6022301 C T LRRN4 Silent p.E530E 0.43 TCGA-EE-A17X-06 20 60348150 60348150 G A CDH4 Missense_Mutation p.G163E 0.41 tolerated(0.05) possibly_damaging(0.461) TCGA-EE-A17X-06 20 61429957 61429957 C T MRGBP Missense_Mutation p.P97S 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 20 61537180 61537180 G A DIDO1 Intron 0.45 TCGA-EE-A17X-06 20 62070013 62070013 C T KCNQ2 Missense_Mutation p.E330K 0.30 deleterious(0.02) benign(0.101) TCGA-EE-A17X-06 20 8678363 8678363 G A PLCB1 Missense_Mutation p.G367E 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 20 9417698 9417698 G A PLCB4 Missense_Mutation p.G876E 0.41 tolerated(0.36) benign(0.037) TCGA-EE-A17X-06 21 40190484 40190484 C T ETS2 Missense_Mutation p.S242F 0.42 tolerated(0.47) benign(0.309) TCGA-EE-A17X-06 21 41648169 41648169 A C DSCAM Missense_Mutation p.I737M 0.44 deleterious(0.01) possibly_damaging(0.863) TCGA-EE-A17X-06 21 42716438 42716438 G T FAM3B Missense_Mutation p.G108V 0.33 deleterious(0) probably_damaging(0.99) TCGA-EE-A17X-06 21 43693414 43693414 G A ABCG1 Missense_Mutation p.E136K 0.45 tolerated(0.62) benign(0.036) TCGA-EE-A17X-06 21 43863490 43863490 C T UBASH3A Missense_Mutation p.A567V 0.17 tolerated(0.71) benign(0.01) TCGA-EE-A17X-06 21 46066504 46066504 G A KRTAP10-11 Silent p.L43L 0.43 TCGA-EE-A17X-06 22 17589371 17589371 C T IL17RA Missense_Mutation p.S421L 0.43 deleterious(0.05) benign(0.391) TCGA-EE-A17X-06 22 19121953 19121953 G A DGCR14 Missense_Mutation p.P396L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 22 30683443 30683443 G A GATSL3 Silent p.I97I 0.49 TCGA-EE-A17X-06 22 30951599 30951599 C T GAL3ST1 Missense_Mutation p.D205N 0.32 tolerated(0.75) benign(0.064) TCGA-EE-A17X-06 22 31137152 31137152 C T OSBP2 Nonsense_Mutation p.Q217* 0.52 TCGA-EE-A17X-06 22 36889754 36889754 G A FOXRED2 Missense_Mutation p.P574L 0.47 deleterious(0.02) benign(0.158) TCGA-EE-A17X-06 22 37499418 37499418 C T TMPRSS6 Missense_Mutation p.G23R 0.45 deleterious(0.03) benign(0.422) TCGA-EE-A17X-06 22 38119243 38119243 G C TRIOBP Missense_Mutation p.G227A 0.43 tolerated_low_confidence(0.26) benign(0.078) TCGA-EE-A17X-06 22 39884257 39884257 C T MGAT3 Missense_Mutation p.S302L 0.51 tolerated(0.07) benign(0.166) TCGA-EE-A17X-06 22 41572330 41572330 C T EP300 Missense_Mutation p.P1620L 0.34 benign(0.181) TCGA-EE-A17X-06 22 41572331 41572331 C T EP300 Silent p.P1620P 0.35 TCGA-EE-A17X-06 22 41620754 41620754 C T L3MBTL2 Silent p.H400H 0.46 TCGA-EE-A17X-06 22 44681538 44681538 C T KIAA1644 Missense_Mutation p.M123I 0.43 tolerated(0.11) possibly_damaging(0.888) TCGA-EE-A17X-06 22 45822019 45822019 C T RIBC2 Silent p.I284I 0.50 TCGA-EE-A17X-06 2 101604668 101604668 C T NPAS2 Missense_Mutation p.P586L 0.43 tolerated(0.2) benign(0.009) TCGA-EE-A17X-06 2 102793102 102793102 G A IL1R1 Nonsense_Mutation p.W531* 0.42 TCGA-EE-A17X-06 2 103236547 103236547 C A SLC9A2 Silent p.I80I 0.44 TCGA-EE-A17X-06 2 103378691 103378691 C T TMEM182 Silent p.I5I 0.58 TCGA-EE-A17X-06 2 10350733 10350733 C T C2orf48 3'UTR 0.43 TCGA-EE-A17X-06 2 108488174 108488174 C T RGPD4 Silent p.P1238P 0.41 TCGA-EE-A17X-06 2 109381890 109381890 C T RANBP2 Missense_Mutation p.P1632L 0.46 tolerated(0.06) benign(0.113) TCGA-EE-A17X-06 2 113785477 113785477 G A IL36B Intron 0.53 TCGA-EE-A17X-06 2 113785610 113785610 G A IL36B Intron 0.50 TCGA-EE-A17X-06 2 113832361 113832361 G A IL1F10 Silent p.G60G 0.47 TCGA-EE-A17X-06 2 11427842 11427842 G A ROCK2 Silent p.V54V 0.18 TCGA-EE-A17X-06 2 116535372 116535372 G A DPP10 Silent p.L445L 0.41 TCGA-EE-A17X-06 2 121107433 121107433 G A INHBB Missense_Mutation p.E403K 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 2 131521642 131521642 C T AMER3 Missense_Mutation p.T666I 0.36 tolerated(0.12) benign(0.051) TCGA-EE-A17X-06 2 133489468 133489468 G A NCKAP5 Missense_Mutation p.S1762F 0.42 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A17X-06 2 141773438 141773438 C T LRP1B Missense_Mutation p.V673M 0.42 possibly_damaging(0.867) TCGA-EE-A17X-06 2 141777574 141777574 C T LRP1B Silent p.L629L 0.44 TCGA-EE-A17X-06 2 143973992 143973992 G T ARHGAP15 Missense_Mutation p.A92S 0.40 tolerated(0.17) benign(0.338) TCGA-EE-A17X-06 2 149248107 149248107 T A MBD5 Missense_Mutation p.L1403I 0.51 tolerated(0.1) unknown(0) TCGA-EE-A17X-06 2 152482132 152482132 C T NEB Nonsense_Mutation p.W3456* 0.38 TCGA-EE-A17X-06 2 152729006 152729006 T A CACNB4 Nonsense_Mutation p.K175* 0.36 TCGA-EE-A17X-06 2 158399337 158399337 C T ACVR1C Silent p.K327K 0.39 TCGA-EE-A17X-06 2 159107317 159107317 C T CCDC148 Silent p.K406K 0.45 TCGA-EE-A17X-06 2 163241346 163241346 G A KCNH7 Silent p.I938I 0.42 TCGA-EE-A17X-06 2 1653137 1653137 C T PXDN Silent p.T805T 0.41 TCGA-EE-A17X-06 2 165948804 165948804 C T SCN3A Nonsense_Mutation p.W1589* 0.32 TCGA-EE-A17X-06 2 166201069 166201069 G A SCN2A Missense_Mutation p.R856Q 0.47 deleterious(0) probably_damaging(0.951) TCGA-EE-A17X-06 2 166929996 166929996 C T SCN1A Missense_Mutation p.E46K 0.42 tolerated(0.07) benign(0.225) TCGA-EE-A17X-06 2 167136983 167136983 C T SCN9A Missense_Mutation p.D732N 0.59 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 2 16734264 16734264 G A FAM49A Silent p.F304F 0.40 TCGA-EE-A17X-06 2 168105732 168105732 C A XIRP2 Silent p.P2610P 0.41 TCGA-EE-A17X-06 2 168107566 168107566 C T XIRP2 Missense_Mutation p.R3222C 0.35 probably_damaging(1) TCGA-EE-A17X-06 2 170507017 170507017 C T CCDC173 Missense_Mutation p.R325Q 0.45 tolerated(0.26) benign(0.043) TCGA-EE-A17X-06 2 179427187 179427187 C T TTN Missense_Mutation p.G27891D 0.40 TCGA-EE-A17X-06 2 179453361 179453361 C T TTN Missense_Mutation p.D21031N 0.38 TCGA-EE-A17X-06 2 179469891 179469891 T A TTN Missense_Mutation p.T18005S 0.54 TCGA-EE-A17X-06 2 179475012 179475012 G A TTN Missense_Mutation p.H17081Y 0.43 TCGA-EE-A17X-06 2 179614249 179614249 G A TTN Intron 0.31 TCGA-EE-A17X-06 2 187702044 187702044 C T ZSWIM2 Silent p.G244G 0.29 TCGA-EE-A17X-06 2 188211048 188211048 G A CALCRL Missense_Mutation p.R417C 0.34 deleterious(0) possibly_damaging(0.899) TCGA-EE-A17X-06 2 189861125 189861125 G A COL3A1 Missense_Mutation p.G555E 0.29 unknown(0) TCGA-EE-A17X-06 2 192012849 192012849 G A STAT4 Silent p.P27P 0.48 TCGA-EE-A17X-06 2 196738410 196738410 G A DNAH7 Nonsense_Mutation p.R2099* 0.59 TCGA-EE-A17X-06 2 200800763 200800763 T C TYW5 Silent p.K194K 0.47 TCGA-EE-A17X-06 2 201523929 201523929 C T AOX1 Silent p.H1071H 0.46 TCGA-EE-A17X-06 2 208030259 208030259 C T KLF7 Missense_Mutation p.E12K 0.39 deleterious(0) benign(0.098) TCGA-EE-A17X-06 2 208030260 208030260 C T KLF7 Silent p.Q11Q 0.39 TCGA-EE-A17X-06 2 208773280 208773280 G A PLEKHM3 Silent p.L636L 0.43 TCGA-EE-A17X-06 2 209190482 209190482 C T PIKFYVE Missense_Mutation p.P983S 0.43 tolerated_low_confidence(0.82) benign(0.007) TCGA-EE-A17X-06 2 211163172 211163172 C T MYL1 Silent p.R92R 0.38 TCGA-EE-A17X-06 2 211457632 211457632 C T CPS1 Silent p.F378F 0.44 TCGA-EE-A17X-06 2 21229594 21229594 C T APOB Silent p.E3382E 0.40 TCGA-EE-A17X-06 2 219029360 219029360 C T CXCR1 Missense_Mutation p.G192E 0.41 deleterious(0) possibly_damaging(0.457) TCGA-EE-A17X-06 2 219562684 219562684 C T STK36 Missense_Mutation p.A1006V 0.46 tolerated(0.06) benign(0.354) TCGA-EE-A17X-06 2 219695066 219695066 C T PRKAG3 Missense_Mutation p.E90K 0.40 deleterious_low_confidence(0) benign(0.014) TCGA-EE-A17X-06 2 219695067 219695067 C T PRKAG3 Silent p.L89L 0.37 TCGA-EE-A17X-06 2 220104815 220104815 A T GLB1L Missense_Mutation p.V183E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 2 220104816 220104816 C T GLB1L Missense_Mutation p.V183M 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 2 220167369 220167369 G A PTPRN Silent p.L190L 0.46 TCGA-EE-A17X-06 2 220440064 220440064 C T INHA Missense_Mutation p.P306L 0.39 tolerated_low_confidence(0.06) benign(0.015) TCGA-EE-A17X-06 2 220500401 220500401 C T SLC4A3 Missense_Mutation p.S687F 0.45 tolerated(0.27) possibly_damaging(0.506) TCGA-EE-A17X-06 2 231033689 231033689 G A SP110 3'UTR 0.36 TCGA-EE-A17X-06 2 232035427 232035427 G A PSMD1 3'UTR 0.52 TCGA-EE-A17X-06 2 233323452 233323452 G A ALPI Missense_Mutation p.E432K 0.46 tolerated(0.13) benign(0.004) TCGA-EE-A17X-06 2 233620943 233620943 C T GIGYF2 Missense_Mutation p.S93F 0.35 probably_damaging(0.997) TCGA-EE-A17X-06 2 233995348 233995348 G A INPP5D Missense_Mutation p.E219K 0.49 tolerated(0.49) benign(0.182) TCGA-EE-A17X-06 2 241808730 241808730 G A AGXT Silent p.G103G 0.45 TCGA-EE-A17X-06 2 242002212 242002212 C T SNED1 Silent p.I754I 0.61 TCGA-EE-A17X-06 2 24290698 24290698 C T SF3B14 Silent p.K104K 0.43 TCGA-EE-A17X-06 2 27157581 27157581 A C DPYSL5 Missense_Mutation p.Y309S 0.38 deleterious(0.03) benign(0.387) TCGA-EE-A17X-06 2 27317674 27317674 G T KHK Intron 0.39 TCGA-EE-A17X-06 2 27500791 27500791 G A DNAJC5G Missense_Mutation p.D95N 0.42 deleterious(0.05) benign(0.331) TCGA-EE-A17X-06 2 27664672 27664672 C T NRBP1 Missense_Mutation p.S534F 0.52 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EE-A17X-06 2 28521344 28521344 G A BRE Missense_Mutation p.M358I 0.51 deleterious(0) probably_damaging(0.917) TCGA-EE-A17X-06 2 31483665 31483665 C T EHD3 Silent p.I264I 0.44 TCGA-EE-A17X-06 2 31572901 31572901 C T XDH Silent p.E940E 0.39 TCGA-EE-A17X-06 2 39285889 39285889 G A SOS1 Silent p.A90A 0.59 TCGA-EE-A17X-06 2 39285890 39285890 G A SOS1 Missense_Mutation p.A90V 0.59 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 2 49216169 49216169 G A FSHR Silent p.I157I 0.35 TCGA-EE-A17X-06 2 61021139 61021139 C T PAPOLG Missense_Mutation p.P601L 0.39 tolerated_low_confidence(0.09) benign(0.103) TCGA-EE-A17X-06 2 66691305 66691305 C T MEIS1 Missense_Mutation p.S232F 0.42 deleterious(0.02) possibly_damaging(0.635) TCGA-EE-A17X-06 2 69015058 69015058 C T ARHGAP25 Missense_Mutation p.L146F 0.43 deleterious(0) probably_damaging(0.959) TCGA-EE-A17X-06 2 70900138 70900138 C T ADD2 Missense_Mutation p.G581E 0.32 tolerated(0.18) probably_damaging(0.927) TCGA-EE-A17X-06 2 74041328 74041328 A G C2orf78 Silent p.Q274Q 0.41 TCGA-EE-A17X-06 2 74274088 74274088 G A TET3 Silent p.K213K 0.43 TCGA-EE-A17X-06 2 79253181 79253181 C T REG3G 5'UTR 0.37 TCGA-EE-A17X-06 2 79384420 79384420 C T REG3A Splice_Site p.X154_splice 0.42 TCGA-EE-A17X-06 2 86310264 86310264 C T POLR1A Missense_Mutation p.R253Q 0.34 tolerated(0.32) probably_damaging(1) TCGA-EE-A17X-06 2 88422628 88422628 A T FABP1 Intron 0.29 TCGA-EE-A17X-06 2 89513060 89513060 T C IGKV1-27 Missense_Mutation p.K67E 0.49 deleterious(0.03) benign(0.231) TCGA-EE-A17X-06 2 9528618 9528618 C T ASAP2 Missense_Mutation p.P776S 0.42 tolerated(0.24) benign(0.001) TCGA-EE-A17X-06 2 96040908 96040908 C T KCNIP3 Silent p.F133F 0.32 TCGA-EE-A17X-06 2 97165184 97165184 G A NEURL3 Intron 0.42 TCGA-EE-A17X-06 2 97218051 97218051 G A ARID5A 3'UTR 0.41 TCGA-EE-A17X-06 2 98744845 98744845 G A VWA3B Silent p.K282K 0.43 TCGA-EE-A17X-06 2 99012414 99012414 C G CNGA3 Missense_Mutation p.L261V 0.41 tolerated(0.11) benign(0.097) TCGA-EE-A17X-06 2 99012478 99012478 C T CNGA3 Missense_Mutation p.S282F 0.49 deleterious(0.03) benign(0.192) TCGA-EE-A17X-06 3 100073618 100073618 G A NIT2 Missense_Mutation p.G229E 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A17X-06 3 108133252 108133252 G A MYH15 Silent p.A1344A 0.43 TCGA-EE-A17X-06 3 108682332 108682333 TT - MORC1 Frame_Shift_Del p.R910Kfs*4 0.31 TCGA-EE-A17X-06 3 11067167 11067167 C T SLC6A1 Silent p.I249I 0.38 TCGA-EE-A17X-06 3 11078690 11078690 C T SLC6A1 3'UTR 0.36 TCGA-EE-A17X-06 3 111658470 111658470 C T PHLDB2 Missense_Mutation p.S760F 0.32 deleterious(0) benign(0.139) TCGA-EE-A17X-06 3 112729989 112729989 G A C3orf17 Silent p.T272T 0.39 TCGA-EE-A17X-06 3 115738374 115738374 G T LSAMP Missense_Mutation p.L168I 0.38 tolerated(0.76) benign(0.124) TCGA-EE-A17X-06 3 121303784 121303784 G A ARGFX Missense_Mutation p.E81K 0.42 tolerated(0.12) benign(0.009) TCGA-EE-A17X-06 3 121643824 121643824 C T SLC15A2 Silent p.I356I 0.25 TCGA-EE-A17X-06 3 122274967 122274967 C T PARP9 Silent p.E52E 0.41 TCGA-EE-A17X-06 3 122351038 122351038 G A PARP15 Missense_Mutation p.R515Q 0.45 tolerated(1) benign(0) TCGA-EE-A17X-06 3 122414336 122414336 C T PARP14 Missense_Mutation p.P221L 0.55 tolerated(0.23) possibly_damaging(0.792) TCGA-EE-A17X-06 3 124175505 124175505 C T KALRN Missense_Mutation p.R1260W 0.40 deleterious(0.02) possibly_damaging(0.827) TCGA-EE-A17X-06 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.47 deleterious(0.01) benign(0.226) TCGA-EE-A17X-06 3 130452686 130452686 G T PIK3R4 Missense_Mutation p.L386I 0.35 tolerated(1) benign(0.178) TCGA-EE-A17X-06 3 13377097 13377097 G A NUP210 Missense_Mutation p.P1234S 0.33 tolerated(0.16) benign(0.009) TCGA-EE-A17X-06 3 134670370 134670370 G A EPHB1 Missense_Mutation p.R94K 0.52 deleterious(0) probably_damaging(0.983) TCGA-EE-A17X-06 3 137881090 137881090 G A DBR1 Missense_Mutation p.P426S 0.43 tolerated(0.06) probably_damaging(0.96) TCGA-EE-A17X-06 3 140401461 140401461 G A TRIM42 Missense_Mutation p.E167K 0.43 tolerated(0.12) possibly_damaging(0.536) TCGA-EE-A17X-06 3 142254971 142254971 G A ATR Silent p.A1266A 0.32 TCGA-EE-A17X-06 3 14554361 14554361 G A GRIP2 RNA 0.37 TCGA-EE-A17X-06 3 161214600 161214600 G A OTOL1 Nonsense_Mutation p.W2* 0.54 TCGA-EE-A17X-06 3 168840402 168840402 C T MECOM Missense_Mutation p.S191N 0.37 deleterious(0.01) possibly_damaging(0.562) TCGA-EE-A17X-06 3 169644351 169644351 G A SAMD7 Missense_Mutation p.E101K 0.36 deleterious(0.03) benign(0.155) TCGA-EE-A17X-06 3 17053118 17053118 C T PLCL2 Silent p.I634I 0.38 TCGA-EE-A17X-06 3 171965375 171965375 C T FNDC3B Missense_Mutation p.P106L 0.49 tolerated(0.08) benign(0.418) TCGA-EE-A17X-06 3 182910879 182910879 C T MCF2L2 Missense_Mutation p.G975D 0.38 tolerated(0.36) benign(0.005) TCGA-EE-A17X-06 3 184040702 184040702 C T EIF4G1 Missense_Mutation p.P637L 0.45 deleterious(0) probably_damaging(0.931) TCGA-EE-A17X-06 3 184298380 184298380 C T EPHB3 Missense_Mutation p.S788F 0.36 deleterious(0) possibly_damaging(0.527) TCGA-EE-A17X-06 3 184298381 184298381 C T EPHB3 Silent p.S788S 0.37 TCGA-EE-A17X-06 3 186504015 186504015 A - EIF4A2 Frame_Shift_Del p.K194Rfs*11 0.23 TCGA-EE-A17X-06 3 193156358 193156358 G A ATP13A4 Missense_Mutation p.H860Y 0.47 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A17X-06 3 194081166 194081166 G A LRRC15 Missense_Mutation p.R209W 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 3 23997550 23997550 G T NR1D2 Silent p.L102L 0.39 TCGA-EE-A17X-06 3 24206923 24206923 G A THRB Intron 0.47 TCGA-EE-A17X-06 3 28476704 28476704 C T ZCWPW2 Missense_Mutation p.H146Y 0.38 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A17X-06 3 2928860 2928860 G A CNTN4 Missense_Mutation p.E298K 0.27 deleterious(0.01) benign(0.138) TCGA-EE-A17X-06 3 3137086 3137086 C T IL5RA Missense_Mutation p.G251E 0.47 tolerated(0.18) benign(0.012) TCGA-EE-A17X-06 3 32933405 32933405 G A TRIM71 3'UTR 0.57 TCGA-EE-A17X-06 3 32995250 32995250 G A CCR4 Missense_Mutation p.M112I 0.39 tolerated(0.8) benign(0) TCGA-EE-A17X-06 3 38038579 38038579 C T VILL Silent p.S154S 0.35 TCGA-EE-A17X-06 3 38592469 38592469 C T SCN5A Nonsense_Mutation p.W1798* 0.56 TCGA-EE-A17X-06 3 38739366 38739366 C T SCN10A Missense_Mutation p.R1782Q 0.35 tolerated(0.23) benign(0.002) TCGA-EE-A17X-06 3 38926777 38926777 A T SCN11A Splice_Site p.X1022_splice 0.50 TCGA-EE-A17X-06 3 38926778 38926778 C T SCN11A Splice_Site p.X1022_splice 0.50 TCGA-EE-A17X-06 3 38936125 38936125 C T SCN11A Missense_Mutation p.D912N 0.45 tolerated(0.42) possibly_damaging(0.678) TCGA-EE-A17X-06 3 43122023 43122023 G A POMGNT2 Silent p.L301L 0.52 TCGA-EE-A17X-06 3 45823701 45823701 G A SLC6A20 Missense_Mutation p.P46S 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A17X-06 3 47470026 47470026 G A SCAP Silent p.I129I 0.47 TCGA-EE-A17X-06 3 49061839 49061839 T C IMPDH2 Splice_Site p.X508_splice 0.40 TCGA-EE-A17X-06 3 49348150 49348150 G A USP4 Missense_Mutation p.S286L 0.52 tolerated(0.12) benign(0.013) TCGA-EE-A17X-06 3 49691891 49691891 C T BSN Silent p.A1634A 0.39 TCGA-EE-A17X-06 3 49950665 49950665 C T MON1A Missense_Mutation p.G136R 0.33 deleterious(0.03) probably_damaging(1) TCGA-EE-A17X-06 3 51264789 51264789 C T DOCK3 Missense_Mutation p.P485S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 3 52556346 52556346 A G STAB1 Missense_Mutation p.N2156D 0.40 deleterious(0.03) benign(0.157) TCGA-EE-A17X-06 3 52620643 52620643 C T PBRM1 Missense_Mutation p.R1037Q 0.42 deleterious(0) benign(0.417) TCGA-EE-A17X-06 3 53814129 53814129 G A CACNA1D Missense_Mutation p.R1575Q 0.53 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A17X-06 3 53857356 53857356 C T CHDH Nonsense_Mutation p.W227* 0.33 TCGA-EE-A17X-06 3 55038833 55038833 G A CACNA2D3 Missense_Mutation p.E912K 0.38 tolerated(0.37) benign(0.014) TCGA-EE-A17X-06 3 56330089 56330089 C T ERC2 Silent p.V344V 0.40 TCGA-EE-A17X-06 3 57488120 57488120 C T DNAH12 Nonsense_Mutation p.W391* 0.33 TCGA-EE-A17X-06 3 63638372 63638372 C T SNTN Silent p.G3G 0.28 TCGA-EE-A17X-06 3 63823682 63823682 G A THOC7 Nonsense_Mutation p.Q108* 0.35 TCGA-EE-A17X-06 3 66432709 66432709 T A LRIG1 Missense_Mutation p.I869F 0.42 tolerated(0.2) benign(0.006) TCGA-EE-A17X-06 3 66433778 66433778 C T LRIG1 Missense_Mutation p.G707R 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 3 66433779 66433779 C T LRIG1 Silent p.V706V 0.39 TCGA-EE-A17X-06 3 67058398 67058398 C T KBTBD8 Silent p.T465T 0.43 TCGA-EE-A17X-06 3 87276605 87276605 C T CHMP2B 5'UTR 0.43 TCGA-EE-A17X-06 3 89528570 89528570 C T EPHA3 Missense_Mutation p.T957I 0.37 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A17X-06 3 93605254 93605254 C G PROS1 Missense_Mutation p.E417Q 0.35 tolerated(0.51) benign(0.21) TCGA-EE-A17X-06 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.36 deleterious(0) possibly_damaging(0.841) TCGA-EE-A17X-06 3 9594046 9594046 G A LHFPL4 Silent p.I106I 0.49 TCGA-EE-A17X-06 3 9771260 9771260 G A CPNE9 Missense_Mutation p.D516N 0.49 tolerated(0.1) probably_damaging(0.993) TCGA-EE-A17X-06 3 97852045 97852045 C T OR5H1 Silent p.F168F 0.35 TCGA-EE-A17X-06 3 97887907 97887907 C T OR5H15 Missense_Mutation p.R122C 0.40 deleterious(0) probably_damaging(0.995) TCGA-EE-A17X-06 3 97888259 97888259 C T OR5H15 Missense_Mutation p.S239F 0.40 deleterious(0.03) possibly_damaging(0.873) TCGA-EE-A17X-06 3 9945733 9945733 C T IL17RE Missense_Mutation p.P56S 0.38 deleterious_low_confidence(0.02) benign(0.004) TCGA-EE-A17X-06 4 100228924 100228924 C T ADH1B 3'UTR 0.39 TCGA-EE-A17X-06 4 100350759 100350759 T C ADH7 Missense_Mutation p.E37G 0.43 tolerated(0.09) benign(0) TCGA-EE-A17X-06 4 100434341 100434341 C T C4orf17 Missense_Mutation p.P35S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 4 102791789 102791789 G A BANK1 Silent p.E297E 0.38 TCGA-EE-A17X-06 4 103537644 103537644 C T NFKB1 Missense_Mutation p.R935C 0.42 deleterious_low_confidence(0.01) benign(0.019) TCGA-EE-A17X-06 4 110451530 110451530 C T SEC24B Silent p.G1054G 0.48 TCGA-EE-A17X-06 4 113352004 113352004 C T ALPK1 Missense_Mutation p.P434L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 4 113362185 113362185 C T ALPK1 Silent p.F1217F 0.50 TCGA-EE-A17X-06 4 115597099 115597099 G A UGT8 Silent p.Q427Q 0.30 TCGA-EE-A17X-06 4 126241707 126241707 G A FAT4 Missense_Mutation p.E1381K 0.29 probably_damaging(0.999) TCGA-EE-A17X-06 4 126336140 126336140 C T FAT4 Missense_Mutation p.R2008W 0.44 probably_damaging(0.996) TCGA-EE-A17X-06 4 126372430 126372430 G A FAT4 Missense_Mutation p.G3420E 0.38 probably_damaging(1) TCGA-EE-A17X-06 4 141789438 141789438 C T RNF150 Missense_Mutation p.D432N 0.27 deleterious_low_confidence(0.02) benign(0.212) TCGA-EE-A17X-06 4 149075792 149075792 G A NR3C2 Missense_Mutation p.P759S 0.46 deleterious(0.01) possibly_damaging(0.644) TCGA-EE-A17X-06 4 151792567 151792567 G A LRBA Missense_Mutation p.S766L 0.40 deleterious(0) probably_damaging(0.992) TCGA-EE-A17X-06 4 152204347 152204347 C T PRSS48 Missense_Mutation p.P187L 0.39 deleterious(0.03) probably_damaging(1) TCGA-EE-A17X-06 4 154702656 154702656 C T SFRP2 Missense_Mutation p.G279R 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A17X-06 4 167983660 167983660 C T SPOCK3 Missense_Mutation p.G76E 0.48 tolerated(0.61) benign(0.272) TCGA-EE-A17X-06 4 173803993 173803993 G A GALNTL6 Missense_Mutation p.E326K 0.41 deleterious(0) possibly_damaging(0.804) TCGA-EE-A17X-06 4 1808298 1808298 G A FGFR3 Missense_Mutation p.E688K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 4 183600840 183600840 G A TENM3 Missense_Mutation p.D450N 0.43 deleterious(0.05) possibly_damaging(0.811) TCGA-EE-A17X-06 4 187004218 187004218 G A TLR3 Missense_Mutation p.E460K 0.42 tolerated(0.06) benign(0.084) TCGA-EE-A17X-06 4 187171498 187171498 C T KLKB1 Missense_Mutation p.H234Y 0.45 tolerated(0.11) probably_damaging(0.947) TCGA-EE-A17X-06 4 187205274 187205274 C T F11 Silent p.I388I 0.52 TCGA-EE-A17X-06 4 187454892 187454892 G A MTNR1A Missense_Mutation p.P335L 0.43 deleterious(0.03) benign(0.046) TCGA-EE-A17X-06 4 3189493 3189493 C T HTT Missense_Mutation p.S1702F 0.49 probably_damaging(0.995) TCGA-EE-A17X-06 4 40351400 40351400 C T CHRNA9 Silent p.I289I 0.48 TCGA-EE-A17X-06 4 40427972 40427972 G A RBM47 Silent p.F577F 0.47 TCGA-EE-A17X-06 4 42119579 42119579 C T BEND4 Missense_Mutation p.D521N 0.43 deleterious_low_confidence(0) benign(0.355) TCGA-EE-A17X-06 4 65155462 65155462 G A TECRL Silent p.F266F 0.69 TCGA-EE-A17X-06 4 69111387 69111387 C T TMPRSS11B 5'UTR 0.31 TCGA-EE-A17X-06 4 69342107 69342107 A C TMPRSS11E Missense_Mutation p.T220P 0.31 deleterious(0) possibly_damaging(0.908) TCGA-EE-A17X-06 4 70146759 70146759 G A UGT2B28 Missense_Mutation p.E181K 0.48 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A17X-06 4 70361039 70361039 C T UGT2B4 Missense_Mutation p.E181K 0.56 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A17X-06 4 74276095 74276095 C A ALB Missense_Mutation p.Q228K 0.39 tolerated(1) benign(0.002) TCGA-EE-A17X-06 4 74352687 74352687 T G AFM Missense_Mutation p.F162L 0.41 deleterious(0.02) benign(0.253) TCGA-EE-A17X-06 4 79199862 79199862 G A FRAS1 Silent p.R345R 0.43 TCGA-EE-A17X-06 4 87556443 87556443 C T PTPN13 Missense_Mutation p.R12W 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 4 906537 906537 C T GAK Missense_Mutation p.E85K 0.45 deleterious(0) probably_damaging(0.986) TCGA-EE-A17X-06 4 94547532 94547532 G A GRID2 Missense_Mutation p.G769E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 4 96199441 96199441 C T UNC5C Missense_Mutation p.C188Y 0.41 deleterious(0) probably_damaging(0.976) TCGA-EE-A17X-06 5 100147716 100147716 C T ST8SIA4 Silent p.K305K 0.79 TCGA-EE-A17X-06 5 10442315 10442315 G A ROPN1L Silent p.Q12Q 0.81 TCGA-EE-A17X-06 5 108719203 108719203 G A PJA2 5'UTR 0.91 TCGA-EE-A17X-06 5 110446899 110446899 C T WDR36 Silent p.F602F 0.80 TCGA-EE-A17X-06 5 112174607 112174607 G T APC Nonsense_Mutation p.G1106* 0.69 TCGA-EE-A17X-06 5 11236916 11236916 G A CTNND2 Missense_Mutation p.P550S 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 5 112399763 112399763 C T MCC Missense_Mutation p.D711N 0.77 deleterious(0) probably_damaging(0.991) TCGA-EE-A17X-06 5 113740319 113740319 T A KCNN2 Missense_Mutation p.I256N 0.87 deleterious(0) probably_damaging(0.965) TCGA-EE-A17X-06 5 1216695 1216695 G A SLC6A19 Missense_Mutation p.V304M 0.70 deleterious(0) possibly_damaging(0.886) TCGA-EE-A17X-06 5 127863635 127863635 C T FBN2 Missense_Mutation p.M154I 0.74 tolerated(0.06) benign(0.019) TCGA-EE-A17X-06 5 137680697 137680697 C T FAM53C Missense_Mutation p.P107L 0.74 tolerated(0.1) benign(0.088) TCGA-EE-A17X-06 5 138651821 138651821 C T MATR3 Missense_Mutation p.P358L 0.77 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A17X-06 5 139741433 139741433 C T SLC4A9 Silent p.A206A 0.87 TCGA-EE-A17X-06 5 140203161 140203161 G A PCDHA5 Missense_Mutation p.G601S 0.69 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A17X-06 5 140503930 140503930 G A PCDHB4 Missense_Mutation p.E784K 0.63 tolerated_low_confidence(0.07) benign(0.013) TCGA-EE-A17X-06 5 140531414 140531414 G A PCDHB6 Missense_Mutation p.E526K 0.83 deleterious(0) possibly_damaging(0.492) TCGA-EE-A17X-06 5 140552480 140552480 G A PCDHB7 Missense_Mutation p.G22R 0.74 tolerated_low_confidence(0.35) benign(0.017) TCGA-EE-A17X-06 5 140590315 140590315 C T PCDHB12 Silent p.P612P 0.48 TCGA-EE-A17X-06 5 140782949 140782949 G A PCDHGA9 Missense_Mutation p.E144K 0.74 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A17X-06 5 141004874 141004874 G A HDAC3 Missense_Mutation p.P373L 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 5 145878238 145878238 A G TCERG1 Missense_Mutation p.R791G 0.80 deleterious(0) unknown(0) TCGA-EE-A17X-06 5 150922489 150922489 C T FAT2 Silent p.E2733E 0.84 TCGA-EE-A17X-06 5 154394896 154394896 G A KIF4B Missense_Mutation p.E493K 0.76 tolerated(0.18) benign(0.025) TCGA-EE-A17X-06 5 161118971 161118971 C T GABRA6 Missense_Mutation p.T284I 0.78 deleterious(0) probably_damaging(0.989) TCGA-EE-A17X-06 5 161580138 161580138 C T GABRG2 Nonsense_Mutation p.Q438* 0.82 TCGA-EE-A17X-06 5 178311020 178311020 C T ZNF354B Nonsense_Mutation p.R523* 0.59 TCGA-EE-A17X-06 5 24488047 24488047 G A CDH10 Missense_Mutation p.P698S 0.81 tolerated(0.52) probably_damaging(0.992) TCGA-EE-A17X-06 5 26988490 26988490 C T CDH9 Splice_Site 0.77 TCGA-EE-A17X-06 5 35753811 35753811 G - SPEF2 Frame_Shift_Del p.W1139Cfs*8 0.41 TCGA-EE-A17X-06 5 38451535 38451535 C T EGFLAM Missense_Mutation p.L896F 0.84 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A17X-06 5 39202457 39202457 C T FYB Silent p.P212P 0.79 TCGA-EE-A17X-06 5 41176592 41176592 C T C6 Missense_Mutation p.E385K 0.92 deleterious(0.02) benign(0.052) TCGA-EE-A17X-06 5 54993677 54993677 T A SLC38A9 Missense_Mutation p.K37I 0.85 deleterious(0) possibly_damaging(0.467) TCGA-EE-A17X-06 5 65470803 65470803 C T SREK1 Missense_Mutation p.S505F 0.68 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A17X-06 5 82835116 82835116 G A VCAN Nonsense_Mutation p.W2098* 0.81 TCGA-EE-A17X-06 5 89924507 89924507 T C GPR98 Missense_Mutation p.L456P 0.83 possibly_damaging(0.902) TCGA-EE-A17X-06 5 89953983 89953983 C T GPR98 Missense_Mutation p.S1547F 0.86 probably_damaging(0.962) TCGA-EE-A17X-06 6 105609924 105609924 G A POPDC3 5'UTR 0.57 TCGA-EE-A17X-06 6 109319926 109319926 G A SESN1 Silent p.S254S 0.47 TCGA-EE-A17X-06 6 11213690 11213690 G T NEDD9 Missense_Mutation p.P95T 0.39 deleterious(0) benign(0.037) TCGA-EE-A17X-06 6 117127855 117127855 G A GPRC6A Missense_Mutation p.S338F 0.41 deleterious(0.02) benign(0.063) TCGA-EE-A17X-06 6 117248364 117248364 C T RFX6 Missense_Mutation p.P687L 0.41 tolerated_low_confidence(0.07) benign(0.06) TCGA-EE-A17X-06 6 125144388 125144388 C T NKAIN2 3'UTR 0.40 TCGA-EE-A17X-06 6 125404058 125404058 G A RNF217 3'UTR 0.54 TCGA-EE-A17X-06 6 12718995 12718995 G A PHACTR1 Missense_Mutation p.D7N 0.88 tolerated_low_confidence(0.07) possibly_damaging(0.728) TCGA-EE-A17X-06 6 128134831 128134831 A C THEMIS Missense_Mutation p.L319V 0.46 tolerated(0.07) probably_damaging(0.957) TCGA-EE-A17X-06 6 129766889 129766889 G A LAMA2 Missense_Mutation p.E2118K 0.44 tolerated(0.92) benign(0.122) TCGA-EE-A17X-06 6 130370480 130370480 G A L3MBTL3 Missense_Mutation p.M52I 0.32 tolerated(0.26) benign(0.006) TCGA-EE-A17X-06 6 137329796 137329796 C T IL20RA Missense_Mutation p.V222I 0.38 tolerated(0.09) possibly_damaging(0.585) TCGA-EE-A17X-06 6 142409773 142409773 T C NMBR Missense_Mutation p.N8S 0.36 tolerated(0.19) benign(0.007) TCGA-EE-A17X-06 6 142737022 142737022 G A GPR126 Nonsense_Mutation p.W920* 0.36 TCGA-EE-A17X-06 6 142737023 142737023 G A GPR126 Nonsense_Mutation p.W920* 0.37 TCGA-EE-A17X-06 6 155618167 155618167 C T TFB1M Missense_Mutation p.E156K 0.49 tolerated(0.24) possibly_damaging(0.844) TCGA-EE-A17X-06 6 160968946 160968946 C T LPA Missense_Mutation p.G1727R 0.35 tolerated(0.18) possibly_damaging(0.754) TCGA-EE-A17X-06 6 167754748 167754748 C T TTLL2 Missense_Mutation p.P454S 0.41 tolerated(0.15) benign(0.036) TCGA-EE-A17X-06 6 24460608 24460608 C T GPLD1 Missense_Mutation p.D303N 0.87 tolerated(0.32) benign(0.051) TCGA-EE-A17X-06 6 29691462 29691462 C T HLA-F Missense_Mutation p.T31I 0.90 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-EE-A17X-06 6 30115634 30115634 C T TRIM40 3'UTR 0.83 TCGA-EE-A17X-06 6 30515241 30515241 G A GNL1 Missense_Mutation p.S389F 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 6 32372808 32372808 T A BTNL2 Missense_Mutation p.H112L 0.86 tolerated(0.09) benign(0.155) TCGA-EE-A17X-06 6 32372809 32372809 G A BTNL2 Missense_Mutation p.H112Y 0.86 tolerated(0.66) benign(0.004) TCGA-EE-A17X-06 6 35265704 35265704 G C DEF6 Missense_Mutation p.G24A 0.79 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A17X-06 6 35558992 35558992 C T FKBP5 Missense_Mutation p.G224D 0.95 deleterious(0) probably_damaging(0.995) TCGA-EE-A17X-06 6 35610510 35610510 C T FKBP5 Missense_Mutation p.R31K 0.42 tolerated(1) benign(0.004) TCGA-EE-A17X-06 6 38704979 38704979 C T DNAH8 Missense_Mutation p.S83F 0.79 benign(0.061) TCGA-EE-A17X-06 6 38793939 38793939 G A DNAH8 Missense_Mutation p.M1068I 0.88 benign(0.002) TCGA-EE-A17X-06 6 43251561 43251561 C T TTBK1 Missense_Mutation p.S1028F 0.46 benign(0.317) TCGA-EE-A17X-06 6 43543521 43543521 C A XPO5 Missense_Mutation p.Q27H 0.43 tolerated(0.35) benign(0.01) TCGA-EE-A17X-06 6 45882144 45882144 G A CLIC5 Missense_Mutation p.L296F 0.54 deleterious(0.03) probably_damaging(0.956) TCGA-EE-A17X-06 6 46107658 46107658 G A ENPP4 Nonsense_Mutation p.W113* 0.33 TCGA-EE-A17X-06 6 46766888 46766888 C T MEP1A Missense_Mutation p.P78S 0.37 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A17X-06 6 46967867 46967867 G A GPR110 3'UTR 0.45 TCGA-EE-A17X-06 6 47221154 47221154 G A TNFRSF21 Silent p.S449S 0.40 TCGA-EE-A17X-06 6 47976640 47976640 G A PTCHD4 Nonsense_Mutation p.Q213* 0.38 TCGA-EE-A17X-06 6 54254732 54254732 T A TINAG 3'UTR 0.58 TCGA-EE-A17X-06 6 55039512 55039512 C T HCRTR2 Silent p.L43L 0.46 TCGA-EE-A17X-06 6 55990415 55990415 C T COL21A1 Missense_Mutation p.E534K 0.46 tolerated(0.65) benign(0.008) TCGA-EE-A17X-06 6 57246869 57246869 A C PRIM2 Missense_Mutation p.K199T 0.20 deleterious(0) possibly_damaging(0.679) TCGA-EE-A17X-06 6 63990574 63990574 C T LGSN Silent p.R294R 0.49 TCGA-EE-A17X-06 6 66044805 66044805 C T EYS Intron 0.29 TCGA-EE-A17X-06 6 70071218 70071218 G A BAI3 Missense_Mutation p.M1351I 0.45 tolerated(0.48) benign(0) TCGA-EE-A17X-06 6 70897937 70897937 C T COL19A1 Silent p.I1005I 0.54 TCGA-EE-A17X-06 6 71246050 71246050 C T FAM135A Silent p.T1351T 0.35 TCGA-EE-A17X-06 6 7231902 7231902 C G RREB1 Silent p.T1190T 0.28 TCGA-EE-A17X-06 6 74072820 74072820 C T KHDC3L Missense_Mutation p.R58W 0.24 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A17X-06 6 74228328 74228328 C T EEF1A1 Missense_Mutation p.G260S 0.45 deleterious_low_confidence(0.02) benign(0.285) TCGA-EE-A17X-06 6 7578051 7578051 G A DSP Missense_Mutation p.E973K 0.91 probably_damaging(0.991) TCGA-EE-A17X-06 6 84025054 84025054 C T ME1 Missense_Mutation p.E227K 0.34 deleterious(0) possibly_damaging(0.906) TCGA-EE-A17X-06 6 84234157 84234157 G A PRSS35 Missense_Mutation p.D333N 0.44 deleterious(0) possibly_damaging(0.867) TCGA-EE-A17X-06 6 84290235 84290235 G A SNAP91 Missense_Mutation p.P745S 0.38 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A17X-06 6 84303343 84303343 G A SNAP91 Missense_Mutation p.P517L 0.46 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A17X-06 6 88173777 88173777 G A C6ORF165 Missense_Mutation p.D560N 0.35 tolerated(0.61) benign(0.002) TCGA-EE-A17X-06 6 90642343 90642343 C T BACH2 Silent p.L770L 0.51 TCGA-EE-A17X-06 6 93956676 93956676 G A EPHA7 Missense_Mutation p.R854C 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A17X-06 6 96651295 96651295 C T FUT9 Silent p.I88I 0.43 TCGA-EE-A17X-06 6 97587033 97587033 T A KLHL32 Missense_Mutation p.F580I 0.49 deleterious(0) probably_damaging(0.989) TCGA-EE-A17X-06 6 99374369 99374369 G A FBXL4 Missense_Mutation p.P166S 0.32 tolerated(0.15) benign(0.092) TCGA-EE-A17X-06 6 99374370 99374370 A G FBXL4 Silent p.N165N 0.33 TCGA-EE-A17X-06 7 100483874 100483874 G A SRRT Missense_Mutation p.E489K 0.40 deleterious(0.01) benign(0.084) TCGA-EE-A17X-06 7 102665603 102665603 G A FBXL13 Silent p.S134S 0.44 TCGA-EE-A17X-06 7 102760641 102760641 C A NAPEPLD Missense_Mutation p.K108N 0.32 tolerated(0.17) benign(0.003) TCGA-EE-A17X-06 7 103197509 103197509 C T RELN Silent p.T1904T 0.41 TCGA-EE-A17X-06 7 105732271 105732271 G A SYPL1 Missense_Mutation p.P254S 0.40 tolerated(0.07) benign(0.152) TCGA-EE-A17X-06 7 113518493 113518493 A G PPP1R3A Missense_Mutation p.V885A 0.43 tolerated(0.79) benign(0.006) TCGA-EE-A17X-06 7 117251758 117251758 A G CFTR Missense_Mutation p.N1088S 0.51 tolerated(0.78) benign(0.008) TCGA-EE-A17X-06 7 120450525 120450525 G A TSPAN12 Nonsense_Mutation p.Q154* 0.52 TCGA-EE-A17X-06 7 123296126 123296126 T C LMOD2 Silent p.L37L 0.48 TCGA-EE-A17X-06 7 123600039 123600039 G A SPAM1 Intron 0.50 TCGA-EE-A17X-06 7 12666342 12666342 C T SCIN Missense_Mutation p.P372L 0.27 deleterious(0.02) benign(0.385) TCGA-EE-A17X-06 7 128478071 128478071 C T FLNC Missense_Mutation p.R334C 0.38 deleterious(0) probably_damaging(0.969) TCGA-EE-A17X-06 7 138738767 138738767 G A ZC3HAV1 Silent p.F754F 0.41 TCGA-EE-A17X-06 7 139661886 139661886 G A TBXAS1 Missense_Mutation p.E377K 0.36 deleterious(0) probably_damaging(0.989) TCGA-EE-A17X-06 7 141536110 141536110 G A PRSS37 3'UTR 0.41 TCGA-EE-A17X-06 7 141619141 141619141 C T OR9A4 Nonsense_Mutation p.Q156* 0.42 TCGA-EE-A17X-06 7 141755449 141755449 G A MGAM Missense_Mutation p.E1136K 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 7 141765557 141765557 G A MGAM Intron 0.34 TCGA-EE-A17X-06 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.44 TCGA-EE-A17X-06 7 142124340 142124340 C T TRBV6-8 Missense_Mutation p.M46I 0.36 tolerated(0.06) benign(0.137) TCGA-EE-A17X-06 7 142180696 142180696 G A TRBV6-5 Nonsense_Mutation p.R55* 0.19 TCGA-EE-A17X-06 7 142197669 142197669 C T TRBV11-2 RNA 0.38 TCGA-EE-A17X-06 7 142583159 142583159 C T TRPV6 Missense_Mutation p.E35K 0.43 tolerated(0.17) benign(0.016) TCGA-EE-A17X-06 7 142649704 142649704 C T KEL Missense_Mutation p.M365I 0.43 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A17X-06 7 143453510 143453510 C T CTAGE6 Silent p.E414E 0.21 TCGA-EE-A17X-06 7 143771310 143771310 G A OR2A25 5'UTR 0.44 TCGA-EE-A17X-06 7 143771930 143771930 G A OR2A25 Silent p.L206L 0.54 TCGA-EE-A17X-06 7 143956032 143956032 C T OR2A7 Silent p.R230R 0.34 TCGA-EE-A17X-06 7 151851222 151851222 G A KMT2C Missense_Mutation p.S4050L 0.41 benign(0.206) TCGA-EE-A17X-06 7 16823044 16823044 C T TSPAN13 Silent p.I181I 0.41 TCGA-EE-A17X-06 7 27831771 27831771 C T TAX1BP1 Silent p.R395R 0.41 TCGA-EE-A17X-06 7 29546880 29546880 C T CHN2 Missense_Mutation p.P343L 0.50 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A17X-06 7 34698005 34698005 G A NPSR1 5'UTR 0.45 TCGA-EE-A17X-06 7 36194146 36194146 C T EEPD1 Silent p.I71I 0.39 TCGA-EE-A17X-06 7 38424445 38424445 C T AMPH Missense_Mutation p.E688K 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A17X-06 7 4091411 4091411 C T SDK1 Missense_Mutation p.P954S 0.37 deleterious(0) probably_damaging(0.987) TCGA-EE-A17X-06 7 4091412 4091412 C T SDK1 Missense_Mutation p.P954L 0.37 deleterious(0) probably_damaging(0.987) TCGA-EE-A17X-06 7 47317666 47317666 G A TNS3 3'UTR 0.46 TCGA-EE-A17X-06 7 51096201 51096201 G A COBL Silent p.S864S 0.37 TCGA-EE-A17X-06 7 51096202 51096202 G A COBL Missense_Mutation p.S864F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 7 55211097 55211097 G A EGFR Missense_Mutation p.E114K 0.34 deleterious(0.04) benign(0.016) TCGA-EE-A17X-06 7 64864771 64864771 G A ZNF92 Missense_Mutation p.E582K 0.30 deleterious(0.03) benign(0.003) TCGA-EE-A17X-06 7 70252365 70252365 G A AUTS2 Missense_Mutation p.D827N 0.67 deleterious(0) possibly_damaging(0.828) TCGA-EE-A17X-06 7 71036297 71036297 C T WBSCR17 Silent p.F330F 0.37 TCGA-EE-A17X-06 7 81591339 81591339 A G CACNA2D1 Missense_Mutation p.V946A 0.40 tolerated(1) benign(0.004) TCGA-EE-A17X-06 7 82453677 82453677 G A PCLO Missense_Mutation p.P4824L 0.33 unknown(0) TCGA-EE-A17X-06 7 82579028 82579028 G A PCLO Missense_Mutation p.P3626S 0.47 unknown(0) TCGA-EE-A17X-06 7 82785026 82785026 G A PCLO Missense_Mutation p.P311S 0.55 unknown(0) TCGA-EE-A17X-06 7 87168615 87168615 C T ABCB1 Missense_Mutation p.R789Q 0.56 deleterious(0) probably_damaging(0.991) TCGA-EE-A17X-06 7 8790861 8790861 A G NXPH1 Missense_Mutation p.N93S 0.44 tolerated(0.07) possibly_damaging(0.531) TCGA-EE-A17X-06 7 92762825 92762825 G A SAMD9L Silent p.S820S 0.42 TCGA-EE-A17X-06 7 92887687 92887687 T G CCDC132 Missense_Mutation p.L187V 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A17X-06 7 94041417 94041417 G A COL1A2 Missense_Mutation p.G463E 0.30 probably_damaging(1) TCGA-EE-A17X-06 7 99217233 99217233 C T ZSCAN25 Missense_Mutation p.L2F 0.36 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A17X-06 8 101146506 101146506 C T FBXO43 Silent p.R587R 0.37 TCGA-EE-A17X-06 8 10469091 10469091 C T RP1L1 Silent p.R839R 0.48 TCGA-EE-A17X-06 8 105367210 105367210 C T DCSTAMP Missense_Mutation p.P379S 0.64 tolerated(0.31) benign(0.21) TCGA-EE-A17X-06 8 106646527 106646527 G A ZFPM2 Silent p.L158L 0.42 TCGA-EE-A17X-06 8 107782255 107782255 C T ABRA Missense_Mutation p.G55E 0.47 tolerated(0.28) benign(0.092) TCGA-EE-A17X-06 8 107782428 107782428 C T ABRA 5'UTR 0.39 TCGA-EE-A17X-06 8 110346343 110346343 A C NUDCD1 5'UTR 0.50 TCGA-EE-A17X-06 8 110478974 110478974 G A PKHD1L1 Missense_Mutation p.D2861N 0.61 tolerated(0.15) benign(0.014) TCGA-EE-A17X-06 8 113246620 113246620 C T CSMD3 Missense_Mutation p.E3572K 0.35 tolerated(0.06) benign(0.004) TCGA-EE-A17X-06 8 113303898 113303898 G A CSMD3 Missense_Mutation p.P2939S 0.37 tolerated(0.08) benign(0.222) TCGA-EE-A17X-06 8 120103388 120103388 G A COLEC10 Missense_Mutation p.G74E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 8 124266466 124266466 T C ZHX1 Missense_Mutation p.E574G 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 8 131859670 131859670 C T ADCY8 Silent p.E834E 0.27 TCGA-EE-A17X-06 8 131916126 131916126 G A ADCY8 Silent p.I601I 0.40 TCGA-EE-A17X-06 8 133899155 133899155 G A TG Missense_Mutation p.G513E 0.39 tolerated(0.73) benign(0.008) TCGA-EE-A17X-06 8 134251180 134251180 G A NDRG1 Missense_Mutation p.P376S 0.44 tolerated(0.21) benign(0.024) TCGA-EE-A17X-06 8 134256628 134256628 C T NDRG1 Silent p.A287A 0.41 TCGA-EE-A17X-06 8 144620785 144620785 G A ZC3H3 Missense_Mutation p.S251F 0.32 tolerated(0.2) benign(0.006) TCGA-EE-A17X-06 8 145947332 145947332 A T ZNF251 Nonsense_Mutation p.Y571* 0.45 TCGA-EE-A17X-06 8 17447138 17447138 G A PDGFRL Missense_Mutation p.D73N 0.42 tolerated(0.15) possibly_damaging(0.69) TCGA-EE-A17X-06 8 22547968 22547968 G A EGR3 3'UTR 0.52 TCGA-EE-A17X-06 8 23106782 23106782 C T CHMP7 Missense_Mutation p.S120F 0.35 deleterious(0) benign(0.297) TCGA-EE-A17X-06 8 24776032 24776032 G A NEFM Silent p.E888E 0.41 TCGA-EE-A17X-06 8 28218600 28218600 G A ZNF395 Silent p.L14L 0.45 TCGA-EE-A17X-06 8 28573503 28573503 C T EXTL3 5'UTR 0.34 TCGA-EE-A17X-06 8 37603117 37603117 C T ERLIN2 Intron 0.43 TCGA-EE-A17X-06 8 39626980 39626980 G A ADAM2 Silent p.F381F 0.39 TCGA-EE-A17X-06 8 39645760 39645760 G A ADAM2 Missense_Mutation p.S218L 0.17 deleterious(0.04) benign(0.063) TCGA-EE-A17X-06 8 53454993 53454993 C T FAM150A Missense_Mutation p.R68K 0.52 tolerated(0.06) benign(0.274) TCGA-EE-A17X-06 8 55542301 55542301 G A RP1 Missense_Mutation p.M1953I 0.50 tolerated(0.07) benign(0.276) TCGA-EE-A17X-06 8 63659634 63659634 C T NKAIN3 Silent p.I139I 0.61 TCGA-EE-A17X-06 8 67089270 67089270 G A CRH Missense_Mutation p.P148L 0.30 tolerated(0.4) benign(0.002) TCGA-EE-A17X-06 8 68658271 68658271 G A CPA6 Missense_Mutation p.L32F 0.47 tolerated(0.68) possibly_damaging(0.506) TCGA-EE-A17X-06 8 69011978 69011978 C T PREX2 Missense_Mutation p.S872F 0.47 deleterious(0.01) benign(0.024) TCGA-EE-A17X-06 8 73848639 73848639 C T KCNB2 Missense_Mutation p.S350F 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A17X-06 8 75263658 75263658 G A GDAP1 Silent p.E89E 0.48 TCGA-EE-A17X-06 8 87738790 87738790 C T CNGB3 Missense_Mutation p.E103K 0.44 tolerated(0.29) benign(0.007) TCGA-EE-A17X-06 8 92365223 92365223 G A SLC26A7 Nonsense_Mutation p.W438* 0.39 TCGA-EE-A17X-06 8 94794663 94794663 C T TMEM67 Missense_Mutation p.S369L 0.51 tolerated(0.16) benign(0.078) TCGA-EE-A17X-06 8 95802053 95802053 C T DPY19L4 Missense_Mutation p.P696L 0.35 tolerated(0.06) benign(0.335) TCGA-EE-A17X-06 9 104125007 104125007 G A BAAT Silent p.F320F 0.46 TCGA-EE-A17X-06 9 107332076 107332076 C T OR13C8 Missense_Mutation p.P210S 0.30 deleterious(0) possibly_damaging(0.896) TCGA-EE-A17X-06 9 107367090 107367090 C T OR13C2 Silent p.L273L 0.41 TCGA-EE-A17X-06 9 107367354 107367354 C T OR13C2 Missense_Mutation p.M185I 0.57 deleterious(0.01) benign(0.11) TCGA-EE-A17X-06 9 107457324 107457324 C T OR13D1 Missense_Mutation p.H208Y 0.41 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A17X-06 9 112145746 112145746 G A PTPN3 Missense_Mutation p.T780I 0.42 deleterious(0) probably_damaging(0.916) TCGA-EE-A17X-06 9 113192700 113192700 G A SVEP1 Missense_Mutation p.P1795L 0.29 possibly_damaging(0.656) TCGA-EE-A17X-06 9 117072929 117072929 C T COL27A1 Missense_Mutation p.S1846L 0.43 unknown(0) TCGA-EE-A17X-06 9 117798450 117798450 C T TNC Silent p.T1861T 0.38 TCGA-EE-A17X-06 9 118949457 118949457 T A PAPPA Missense_Mutation p.I147N 0.53 deleterious(0.02) benign(0) TCGA-EE-A17X-06 9 119158854 119158854 G A PAPPA Missense_Mutation p.E1615K 0.32 deleterious(0) benign(0.292) TCGA-EE-A17X-06 9 119625870 119625870 C T ASTN2 Missense_Mutation p.G627R 0.25 deleterious(0) unknown(0) TCGA-EE-A17X-06 9 120475290 120475290 A G TLR4 Missense_Mutation p.Y295C 0.49 deleterious(0.04) benign(0.102) TCGA-EE-A17X-06 9 121929941 121929941 C T BRINP1 Silent p.G569G 0.40 TCGA-EE-A17X-06 9 125563054 125563054 C T OR1K1 Missense_Mutation p.S218F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A17X-06 9 127701007 127701007 T C GOLGA1 5'UTR 0.52 TCGA-EE-A17X-06 9 130236188 130236188 C T LRSAM1 Missense_Mutation p.S243L 0.53 tolerated(0.34) benign(0) TCGA-EE-A17X-06 9 130931699 130931699 C T CIZ1 Missense_Mutation p.D711N 0.45 deleterious(0) possibly_damaging(0.652) TCGA-EE-A17X-06 9 131475654 131475654 C T PKN3 Silent p.I360I 0.36 TCGA-EE-A17X-06 9 135983586 135983586 G A RALGDS Missense_Mutation p.P329L 0.43 tolerated(0.1) unknown(0) TCGA-EE-A17X-06 9 137702118 137702118 G T COL5A1 Silent p.P1164P 0.45 TCGA-EE-A17X-06 9 139324151 139324151 G A INPP5E Silent p.S637S 0.44 TCGA-EE-A17X-06 9 139700889 139700889 C T CCDC183 Intron 0.46 TCGA-EE-A17X-06 9 139722973 139722973 T G RABL6 Nonsense_Mutation p.L114* 0.42 TCGA-EE-A17X-06 9 20874701 20874701 C T FOCAD Missense_Mutation p.P738S 0.80 tolerated(0.31) benign(0.002) TCGA-EE-A17X-06 9 71006611 71006611 G T PGM5 Nonsense_Mutation p.G287* 0.35 TCGA-EE-A17X-06 9 71628256 71628256 G A PRKACG Silent p.I251I 0.51 TCGA-EE-A17X-06 9 72046311 72046311 G A APBA1 Missense_Mutation p.H816Y 0.42 deleterious(0.02) possibly_damaging(0.883) TCGA-EE-A17X-06 9 72785459 72785459 G A MAMDC2 Silent p.E521E 0.38 TCGA-EE-A17X-06 9 77370359 77370359 C T TRPM6 Missense_Mutation p.D1606N 0.39 tolerated_low_confidence(0.13) benign(0.097) TCGA-EE-A17X-06 9 77377697 77377697 C T TRPM6 Missense_Mutation p.R1297K 0.43 tolerated_low_confidence(0.53) benign(0.001) TCGA-EE-A17X-06 9 8317926 8317926 G A PTPRD Missense_Mutation p.S1896F 0.84 deleterious(0) possibly_damaging(0.633) TCGA-EE-A17X-06 9 87486756 87486756 C T NTRK2 Intron 0.47 TCGA-EE-A17X-06 9 87636271 87636271 G A NTRK2 Missense_Mutation p.M812I 0.37 deleterious(0.01) benign(0.1) TCGA-EE-A17X-06 9 88661463 88661463 T A GOLM1 Missense_Mutation p.N130I 0.50 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A17X-06 9 93606333 93606333 C T SYK Silent p.F51F 0.52 TCGA-EE-A17X-06 9 96080313 96080313 C T WNK2 3'UTR 0.49 TCGA-EE-A17X-06 9 990863 990863 C T DMRT3 Missense_Mutation p.P426L 0.74 deleterious_low_confidence(0.04) benign(0.015) TCGA-EE-A17X-06 9 99581721 99581721 G A ZNF782 Missense_Mutation p.T195I 0.51 tolerated(0.41) benign(0.033) TCGA-EE-A17X-06 9 99581952 99581952 G A ZNF782 Missense_Mutation p.S118L 0.36 tolerated(0.95) benign(0.335) TCGA-EE-A17X-06 9 99700235 99700235 G A NUTM2G Silent p.L464L 0.35 TCGA-EE-A17X-06 X 102755324 102755324 T C RAB40A Missense_Mutation p.K121E 0.70 deleterious(0) possibly_damaging(0.648) TCGA-EE-A17X-06 X 104464658 104464658 C T TEX13A Missense_Mutation p.E142K 0.95 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A17X-06 X 106312492 106312492 G A RBM41 Silent p.T356T 0.84 TCGA-EE-A17X-06 X 107807133 107807133 C T COL4A5 Missense_Mutation p.P85S 0.83 unknown(0) TCGA-EE-A17X-06 X 108641814 108641814 C T GUCY2F Missense_Mutation p.G747S 0.89 tolerated(0.48) benign(0.077) TCGA-EE-A17X-06 X 111195414 111195414 C T TRPC5 Missense_Mutation p.E79K 0.83 deleterious(0) probably_damaging(0.991) TCGA-EE-A17X-06 X 111195505 111195505 C T TRPC5 Silent p.V48V 0.83 TCGA-EE-A17X-06 X 117079498 117079498 G A KLHL13 Missense_Mutation p.L50F 0.97 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-EE-A17X-06 X 139038683 139038683 C T CXorf66 Missense_Mutation p.G153E 0.91 tolerated(1) benign(0.012) TCGA-EE-A17X-06 X 139865642 139865642 C T CDR1 3'UTR 0.82 TCGA-EE-A17X-06 X 140335851 140335851 C T SPANXC Silent p.G31G 0.17 TCGA-EE-A17X-06 X 142596928 142596928 C T SPANXN3 Missense_Mutation p.E48K 0.95 tolerated(0.59) benign(0.054) TCGA-EE-A17X-06 X 151303095 151303095 G A MAGEA10 Missense_Mutation p.A333V 0.81 deleterious(0.02) benign(0.433) TCGA-EE-A17X-06 X 151303315 151303315 C T MAGEA10 Missense_Mutation p.E260K 0.88 tolerated(0.81) benign(0.187) TCGA-EE-A17X-06 X 153496229 153496229 C T OPN1MW2 Silent p.P319P 0.36 TCGA-EE-A17X-06 X 153762623 153762623 G A G6PD Missense_Mutation p.R222C 0.91 deleterious(0.03) benign(0.002) TCGA-EE-A17X-06 X 21627525 21627525 G A CNKSR2 Missense_Mutation p.E828K 0.93 tolerated(0.24) benign(0.206) TCGA-EE-A17X-06 X 23018312 23018312 C T DDX53 Silent p.S46S 0.85 TCGA-EE-A17X-06 X 30237372 30237372 A G MAGEB2 Silent p.E225E 0.13 TCGA-EE-A17X-06 X 34961495 34961495 C T FAM47B Missense_Mutation p.P183S 0.76 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A17X-06 X 35821044 35821044 G A MAGEB16 Missense_Mutation p.G244E 0.93 deleterious(0) probably_damaging(0.995) TCGA-EE-A17X-06 X 43637955 43637955 C T MAOB Missense_Mutation p.V371I 1.00 tolerated(0.14) benign(0.124) TCGA-EE-A17X-06 X 50659043 50659043 C T BMP15 Silent p.L205L 0.95 TCGA-EE-A17X-06 X 54783453 54783453 G A ITIH6 Silent p.F1018F 0.93 TCGA-EE-A17X-06 X 5811130 5811130 C T NLGN4X Missense_Mutation p.E727K 1.00 deleterious_low_confidence(0.01) benign(0.084) TCGA-EE-A17X-06 X 64139046 64139046 G A ZC4H2 Missense_Mutation p.P146L 0.90 tolerated(0.27) benign(0.09) TCGA-EE-A17X-06 X 77912524 77912524 G A ZCCHC5 Missense_Mutation p.A465V 0.94 tolerated(0.08) benign(0.081) TCGA-EE-A17X-06 X 78616621 78616621 C T ITM2A Missense_Mutation p.E253K 0.96 tolerated(1) benign(0.005) TCGA-EE-A17X-06 X 9000489 9000489 G A FAM9B Silent p.V14V 0.93 TCGA-EE-A17X-06 X 96139470 96139470 T A RPA4 Missense_Mutation p.L54H 0.93 deleterious(0) probably_damaging(0.958) TCGA-EE-A17Y-06 10 104140011 104140011 C T GBF1 Silent p.F1627F 0.57 TCGA-EE-A17Y-06 10 22608919 22608919 C T COMMD3 Nonsense_Mutation p.Q194* 0.52 TCGA-EE-A17Y-06 10 50966519 50966519 G C OGDHL Missense_Mutation p.F40L 0.61 tolerated(0.47) benign(0.001) TCGA-EE-A17Y-06 11 102567432 102567432 C T MMP27 Missense_Mutation p.D252N 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 11 114272447 114272447 C T RBM7 Missense_Mutation p.P42S 0.28 deleterious(0.03) benign(0.303) TCGA-EE-A17Y-06 11 12231069 12231069 C T MICAL2 Silent p.L205L 0.41 TCGA-EE-A17Y-06 11 12231070 12231070 C T MICAL2 Missense_Mutation p.P206S 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A17Y-06 11 20673876 20673876 C T SLC6A5 Silent p.T704T 0.46 TCGA-EE-A17Y-06 11 376073 376073 G A B4GALNT4 Splice_Site p.X366_splice 0.18 TCGA-EE-A17Y-06 11 376074 376074 G A B4GALNT4 Missense_Mutation p.V366M 0.18 deleterious(0) probably_damaging(0.984) TCGA-EE-A17Y-06 11 5410796 5410796 C T OR51M1 Silent p.F56F 0.13 TCGA-EE-A17Y-06 11 55579441 55579441 C T OR5L1 Missense_Mutation p.P167S 0.13 tolerated(1) benign(0.019) TCGA-EE-A17Y-06 11 56185523 56185523 G A OR5R1 Silent p.F62F 0.20 TCGA-EE-A17Y-06 11 57268284 57268284 C T SLC43A1 Missense_Mutation p.G145S 0.39 deleterious(0.03) possibly_damaging(0.687) TCGA-EE-A17Y-06 11 57373518 57373518 C T SERPING1 Missense_Mutation p.R241W 0.16 tolerated(0.19) benign(0.005) TCGA-EE-A17Y-06 11 60975069 60975069 C T PGA3 Silent p.L146L 0.37 TCGA-EE-A17Y-06 11 61543557 61543557 C T MYRF Silent p.I447I 0.27 TCGA-EE-A17Y-06 11 64138132 64138132 C T RPS6KA4 Silent p.L685L 0.50 TCGA-EE-A17Y-06 11 66287153 66287153 G A BBS1 Silent p.L219L 0.20 TCGA-EE-A17Y-06 11 68115510 68115510 G A LRP5 Missense_Mutation p.G96E 0.17 tolerated(0.1) benign(0.013) TCGA-EE-A17Y-06 11 7070914 7070914 C T NLRP14 Silent p.I712I 0.19 TCGA-EE-A17Y-06 11 76910721 76910721 C T MYO7A Silent p.F1570F 0.36 TCGA-EE-A17Y-06 11 77301464 77301464 C T AQP11 Silent p.L143L 0.39 TCGA-EE-A17Y-06 12 102813412 102813412 C T IGF1 Missense_Mutation p.D93N 0.19 tolerated(0.08) possibly_damaging(0.823) TCGA-EE-A17Y-06 12 103699889 103699889 G A C12orf42 Missense_Mutation p.S165L 0.38 tolerated(0.14) possibly_damaging(0.451) TCGA-EE-A17Y-06 12 105420355 105420355 C A ALDH1L2 Missense_Mutation p.G895V 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 12 10999770 10999770 G A PRR4 Silent p.H99H 0.35 TCGA-EE-A17Y-06 12 122691861 122691861 G A B3GNT4 Missense_Mutation p.E355K 0.26 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A17Y-06 12 130649206 130649206 C T FZD10 Silent p.I573I 0.46 TCGA-EE-A17Y-06 12 34179674 34179674 C T ALG10 Missense_Mutation p.R416C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 12 47629822 47629822 C T PCED1B Missense_Mutation p.H326Y 0.32 tolerated(1) benign(0) TCGA-EE-A17Y-06 12 51492621 51492621 A G TFCP2 Missense_Mutation p.C453R 0.32 tolerated(0.61) benign(0) TCGA-EE-A17Y-06 12 70049472 70049472 G A BEST3 Missense_Mutation p.P408S 0.33 tolerated(0.06) benign(0.311) TCGA-EE-A17Y-06 12 70981045 70981045 G A PTPRB Missense_Mutation p.P685S 0.42 deleterious(0) probably_damaging(0.94) TCGA-EE-A17Y-06 12 86198791 86198791 G A RASSF9 Missense_Mutation p.H333Y 0.29 deleterious(0.02) benign(0.047) TCGA-EE-A17Y-06 12 96691070 96691070 A G CDK17 Missense_Mutation p.I284T 0.18 tolerated(0.23) probably_damaging(0.993) TCGA-EE-A17Y-06 13 113760179 113760179 C T F7 Silent p.L8L 0.29 TCGA-EE-A17Y-06 13 25448326 25448326 C T RNF17 Missense_Mutation p.P1508S 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A17Y-06 13 25889500 25889500 G A NUPL1 Missense_Mutation p.G194R 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A17Y-06 13 26154053 26154053 C T ATP8A2 Missense_Mutation p.R659W 0.27 deleterious(0) possibly_damaging(0.888) TCGA-EE-A17Y-06 13 32913284 32913284 C T BRCA2 Missense_Mutation p.L1598F 0.28 tolerated(0.11) probably_damaging(0.965) TCGA-EE-A17Y-06 13 38211377 38211377 G A TRPC4 Missense_Mutation p.S871F 0.28 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EE-A17Y-06 13 52646132 52646132 C T NEK5 Silent p.E624E 0.38 TCGA-EE-A17Y-06 13 92345703 92345703 G A GPC5 Missense_Mutation p.M196I 0.14 tolerated(0.27) benign(0.026) TCGA-EE-A17Y-06 14 102675478 102675478 C T WDR20 Missense_Mutation p.P355L 0.50 tolerated(0.08) benign(0.017) TCGA-EE-A17Y-06 14 23865948 23865948 G A MYH6 Silent p.S749S 0.48 TCGA-EE-A17Y-06 14 51132299 51132299 G A SAV1 Missense_Mutation p.P45S 0.12 deleterious(0.01) possibly_damaging(0.782) TCGA-EE-A17Y-06 14 81296550 81296550 T C CEP128 Intron 0.40 TCGA-EE-A17Y-06 15 102346732 102346732 C T OR4F6 Silent p.F270F 0.31 TCGA-EE-A17Y-06 15 35233143 35233143 T - AQR Frame_Shift_Del p.I200Lfs*34 0.22 TCGA-EE-A17Y-06 15 38852056 38852056 C T RASGRP1 Silent p.L62L 0.18 TCGA-EE-A17Y-06 15 51830432 51830432 A G DMXL2 Silent p.G441G 0.06 TCGA-EE-A17Y-06 15 55919241 55919241 G A PRTG Silent p.I964I 0.29 TCGA-EE-A17Y-06 15 67713666 67713666 C T IQCH Silent p.V752V 0.20 TCGA-EE-A17Y-06 15 71124348 71124348 G A LARP6 3'UTR 0.19 TCGA-EE-A17Y-06 15 75042101 75042101 C T CYP1A2 Missense_Mutation p.P8S 0.28 tolerated(0.32) benign(0.031) TCGA-EE-A17Y-06 15 75042102 75042102 C T CYP1A2 Missense_Mutation p.P8L 0.29 deleterious(0.05) benign(0.03) TCGA-EE-A17Y-06 15 76634282 76634282 T C ISL2 3'UTR 0.22 TCGA-EE-A17Y-06 16 11785738 11785738 G A TXNDC11 Silent p.S436S 0.22 TCGA-EE-A17Y-06 16 2098705 2098705 C A TSC2 Missense_Mutation p.S30Y 0.24 tolerated(0.1) benign(0.139) TCGA-EE-A17Y-06 16 21854780 21854780 G A NPIPB4 Missense_Mutation p.R158C 0.14 benign(0.293) TCGA-EE-A17Y-06 16 2816697 2816697 C T SRRM2 Silent p.S2056S 0.33 TCGA-EE-A17Y-06 16 2816698 2816698 C T SRRM2 Missense_Mutation p.R2057C 0.33 unknown(0) TCGA-EE-A17Y-06 16 31501384 31501384 G A C16orf58 3'UTR 0.22 TCGA-EE-A17Y-06 16 354394 354394 G A AXIN1 Silent p.F388F 0.27 TCGA-EE-A17Y-06 16 48311272 48311272 C G LONP2 Missense_Mutation p.P422R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 16 84212771 84212771 G A TAF1C Nonsense_Mutation p.Q796* 0.41 TCGA-EE-A17Y-06 16 88904144 88904144 G A GALNS Missense_Mutation p.P151L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 16 90001226 90001226 G T TUBB3 Nonsense_Mutation p.E123* 0.26 TCGA-EE-A17Y-06 17 10317561 10317561 C T MYH8 Missense_Mutation p.G319E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 17 16120579 16120579 C G PIGL Silent p.V13V 0.23 TCGA-EE-A17Y-06 17 26652620 26652620 A G TMEM97 Missense_Mutation p.E73G 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A17Y-06 17 33501269 33501269 G A UNC45B Silent p.K615K 0.31 TCGA-EE-A17Y-06 17 33806727 33806727 C T SLFN12L Missense_Mutation p.E168K 0.29 tolerated(0.99) benign(0.003) TCGA-EE-A17Y-06 17 4020382 4020382 T C ZZEF1 Missense_Mutation p.N193S 0.30 deleterious(0) possibly_damaging(0.86) TCGA-EE-A17Y-06 17 47218632 47218632 A G B4GALNT2 Missense_Mutation p.K73R 0.30 tolerated(0.25) possibly_damaging(0.636) TCGA-EE-A17Y-06 17 7481292 7481292 C T EIF4A1 Intron 0.30 TCGA-EE-A17Y-06 17 76374745 76374745 C T PGS1 5'UTR 0.32 TCGA-EE-A17Y-06 17 76570995 76570995 C T DNAH17 Missense_Mutation p.V49I 0.22 benign(0.003) TCGA-EE-A17Y-06 17 77081744 77081744 C T ENGASE Silent p.L581L 0.26 TCGA-EE-A17Y-06 17 79517916 79517916 G A C17orf70 Missense_Mutation p.P202S 0.28 tolerated(0.22) probably_damaging(0.977) TCGA-EE-A17Y-06 17 7984161 7984161 G A AC129492.6 3'UTR 0.28 TCGA-EE-A17Y-06 18 13681927 13681927 G A FAM210A Silent p.G50G 0.14 TCGA-EE-A17Y-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.46 TCGA-EE-A17Y-06 18 44408073 44408073 G A PIAS2 Missense_Mutation p.P453S 0.22 tolerated(0.82) benign(0.009) TCGA-EE-A17Y-06 18 47511176 47511176 G A MYO5B Silent p.F286F 0.10 TCGA-EE-A17Y-06 18 5290801 5290801 G A ZBTB14 3'UTR 0.19 TCGA-EE-A17Y-06 18 56204595 56204595 C T ALPK2 Missense_Mutation p.E942K 0.39 tolerated(0.1) benign(0.343) TCGA-EE-A17Y-06 18 61309074 61309074 C T SERPINB4 Missense_Mutation p.E91K 0.16 tolerated(0.08) benign(0.172) TCGA-EE-A17Y-06 18 63489479 63489479 C T CDH7 Missense_Mutation p.P263L 0.48 deleterious(0.01) possibly_damaging(0.558) TCGA-EE-A17Y-06 18 70451055 70451055 G A NETO1 Silent p.S242S 0.42 TCGA-EE-A17Y-06 18 77895150 77895150 C T ADNP2 Silent p.A618A 0.22 TCGA-EE-A17Y-06 19 11285168 11285168 C A KANK2 Silent p.V691V 0.24 TCGA-EE-A17Y-06 19 12691317 12691317 A C ZNF490 Missense_Mutation p.H524Q 0.25 deleterious(0.02) possibly_damaging(0.882) TCGA-EE-A17Y-06 19 15754856 15754856 C T CYP4F3 Intron 0.18 TCGA-EE-A17Y-06 19 15784510 15784510 G A CYP4F12 Silent p.R57R 0.31 TCGA-EE-A17Y-06 19 16860971 16860971 C T NWD1 Silent p.L506L 0.34 TCGA-EE-A17Y-06 19 17597444 17597444 C A SLC27A1 Silent p.R80R 0.29 TCGA-EE-A17Y-06 19 19656504 19656504 C T CILP2 Silent p.A1050A 0.25 TCGA-EE-A17Y-06 19 3544870 3544870 C T MFSD12 Missense_Mutation p.V453M 0.37 possibly_damaging(0.557) TCGA-EE-A17Y-06 19 39019618 39019618 G A RYR1 Missense_Mutation p.E3688K 0.27 benign(0.064) TCGA-EE-A17Y-06 19 41600879 41600879 C T CYP2A13 Missense_Mutation p.P393S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A17Y-06 19 41754431 41754431 G A AXL Missense_Mutation p.G517D 0.39 deleterious(0) probably_damaging(0.978) TCGA-EE-A17Y-06 19 42931281 42931281 T G LIPE Silent p.S7S 0.31 TCGA-EE-A17Y-06 19 43371394 43371394 C T PSG1 3'UTR 0.25 TCGA-EE-A17Y-06 19 43371395 43371395 C T PSG1 3'UTR 0.25 TCGA-EE-A17Y-06 19 45850770 45850770 G A KLC3 Silent p.R185R 0.19 TCGA-EE-A17Y-06 19 46393958 46393958 G A MYPOP Missense_Mutation p.P375S 0.40 tolerated_low_confidence(0.39) benign(0.118) TCGA-EE-A17Y-06 19 50826917 50826917 G A KCNC3 Silent p.F431F 0.33 TCGA-EE-A17Y-06 19 53644084 53644084 G A ZNF347 Missense_Mutation p.S667L 0.30 deleterious(0.01) possibly_damaging(0.464) TCGA-EE-A17Y-06 19 55420643 55420643 C T NCR1 Missense_Mutation p.P132L 0.31 deleterious(0.04) possibly_damaging(0.762) TCGA-EE-A17Y-06 19 56896336 56896336 G A ZNF582 Silent p.P150P 0.32 TCGA-EE-A17Y-06 19 6977279 6977279 G A EMR4P RNA 0.27 TCGA-EE-A17Y-06 19 7831649 7831649 G A CLEC4M Missense_Mutation p.E298K 0.25 deleterious(0.05) probably_damaging(0.985) TCGA-EE-A17Y-06 19 9057123 9057123 C T MUC16 Missense_Mutation p.G10108E 0.37 benign(0.016) TCGA-EE-A17Y-06 19 9077090 9077090 G A MUC16 Silent p.I3452I 0.31 TCGA-EE-A17Y-06 1 153005145 153005145 A G SPRR1B 3'UTR 0.35 TCGA-EE-A17Y-06 1 158326480 158326480 C T CD1E Intron 0.37 TCGA-EE-A17Y-06 1 160260465 160260465 G A COPA Silent p.I1153I 0.26 TCGA-EE-A17Y-06 1 167095025 167095025 G A DUSP27 Silent p.G219G 0.37 TCGA-EE-A17Y-06 1 169588454 169588454 T G SELP Missense_Mutation p.N3H 0.06 deleterious_low_confidence(0.01) benign(0.296) TCGA-EE-A17Y-06 1 171251294 171251294 C T FMO1 Silent p.F335F 0.34 TCGA-EE-A17Y-06 1 173526486 173526486 G A SLC9C2 Missense_Mutation p.P403L 0.23 tolerated(0.11) probably_damaging(0.997) TCGA-EE-A17Y-06 1 180217561 180217561 G A LHX4 Missense_Mutation p.G73E 0.28 tolerated(0.57) probably_damaging(0.999) TCGA-EE-A17Y-06 1 190424032 190424032 G A BRINP3 5'UTR 0.33 TCGA-EE-A17Y-06 1 196759342 196759342 C T CFHR3 Missense_Mutation p.P261S 0.56 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A17Y-06 1 207010336 207010336 C T IL19 Silent p.L98L 0.35 TCGA-EE-A17Y-06 1 207640229 207640229 G A CR2 Silent p.G139G 0.29 TCGA-EE-A17Y-06 1 213147256 213147256 C T VASH2 Intron 0.61 TCGA-EE-A17Y-06 1 237872838 237872839 - A RYR2 Frame_Shift_Ins p.V3402Sfs*10 0.46 TCGA-EE-A17Y-06 1 244869099 244869099 C T DESI2 3'UTR 0.28 TCGA-EE-A17Y-06 1 67721573 67721573 C T IL23R Missense_Mutation p.P401L 0.52 deleterious(0) probably_damaging(0.958) TCGA-EE-A17Y-06 1 898791 898791 C T KLHL17 Missense_Mutation p.S421F 0.63 deleterious(0) probably_damaging(0.987) TCGA-EE-A17Y-06 20 1638337 1638337 G A SIRPG Silent p.P8P 0.26 TCGA-EE-A17Y-06 20 18139841 18139841 T C CSRP2BP Missense_Mutation p.V205A 0.36 tolerated(0.11) benign(0.178) TCGA-EE-A17Y-06 20 33703408 33703408 G A EDEM2 Missense_Mutation p.S522L 0.34 tolerated(0.32) benign(0) TCGA-EE-A17Y-06 20 34505530 34505530 C T PHF20 Silent p.F650F 0.33 TCGA-EE-A17Y-06 20 49626217 49626217 G A KCNG1 Missense_Mutation p.P220L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A17Y-06 20 50705006 50705006 G A ZFP64 Missense_Mutation p.P188S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A17Y-06 20 9624913 9624913 G A PAK7 Missense_Mutation p.H22Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-EE-A17Y-06 21 35467791 35467791 C T SLC5A3 Silent p.I98I 0.54 TCGA-EE-A17Y-06 22 17288961 17288961 C T XKR3 Translation_Start_Site p.M1? 0.24 deleterious(0) benign(0.107) TCGA-EE-A17Y-06 22 31330890 31330890 G A MORC2 Silent p.L629L 0.48 TCGA-EE-A17Y-06 22 31662019 31662019 C T LIMK2 Silent p.S293S 0.25 TCGA-EE-A17Y-06 22 41973224 41973224 G A PMM1 3'UTR 0.15 TCGA-EE-A17Y-06 2 113820044 113820044 G T IL36RN Missense_Mutation p.M86I 0.09 tolerated(0.15) probably_damaging(0.997) TCGA-EE-A17Y-06 2 128396772 128396772 G A LIMS2 3'UTR 0.64 TCGA-EE-A17Y-06 2 155307048 155307048 G A GALNT13 Missense_Mutation p.M552I 0.23 tolerated(0.37) benign(0) TCGA-EE-A17Y-06 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.44 tolerated(0.08) benign(0.007) TCGA-EE-A17Y-06 2 179530158 179530158 C T TTN Missense_Mutation p.E11997K 0.17 TCGA-EE-A17Y-06 2 179588785 179588785 T C TTN Silent p.V7067V 0.48 TCGA-EE-A17Y-06 2 179605623 179605623 C T TTN Missense_Mutation p.E4113K 0.51 TCGA-EE-A17Y-06 2 179605649 179605649 C T TTN Missense_Mutation p.S4104N 0.19 TCGA-EE-A17Y-06 2 179647015 179647015 C T TTN Missense_Mutation p.G1102R 0.42 TCGA-EE-A17Y-06 2 182413290 182413290 G A CERKL Missense_Mutation p.S398F 0.39 deleterious(0.01) possibly_damaging(0.463) TCGA-EE-A17Y-06 2 185803769 185803769 G A ZNF804A 3'UTR 0.16 TCGA-EE-A17Y-06 2 189864605 189864605 G A COL3A1 Missense_Mutation p.G756E 0.14 unknown(0) TCGA-EE-A17Y-06 2 196681592 196681592 G A DNAH7 Missense_Mutation p.S3174F 0.14 deleterious(0) probably_damaging(0.983) TCGA-EE-A17Y-06 2 196822000 196822000 C T DNAH7 Missense_Mutation p.M1021I 0.51 deleterious(0.04) benign(0.189) TCGA-EE-A17Y-06 2 227919421 227919421 G A COL4A4 Missense_Mutation p.P917S 0.49 unknown(0) TCGA-EE-A17Y-06 2 228401685 228401685 C T AGFG1 Nonsense_Mutation p.Q476* 0.17 TCGA-EE-A17Y-06 2 230910676 230910676 T C SLC16A14 Missense_Mutation p.N389S 0.42 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A17Y-06 2 234637997 234637997 C T UGT1A3 Silent p.F75F 0.20 TCGA-EE-A17Y-06 2 33952355 33952355 A G AC009499.1 Intron 0.61 TCGA-EE-A17Y-06 2 73449886 73449886 C T SMYD5 Nonsense_Mutation p.Q216* 0.55 TCGA-EE-A17Y-06 2 74718708 74718708 C T TTC31 Missense_Mutation p.P262L 0.59 tolerated(0.05) benign(0.01) TCGA-EE-A17Y-06 2 74718709 74718709 C T TTC31 Silent p.P262P 0.62 TCGA-EE-A17Y-06 3 112968657 112968657 G A BOC Missense_Mutation p.R3H 0.52 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A17Y-06 3 122404049 122404049 G A PARP14 Missense_Mutation p.E69K 0.55 tolerated(0.13) benign(0.063) TCGA-EE-A17Y-06 3 123376213 123376213 G T MYLK Missense_Mutation p.L1350M 0.47 deleterious(0) possibly_damaging(0.788) TCGA-EE-A17Y-06 3 124438270 124438270 C T RP11-71H17.7 5'Flank 0.43 TCGA-EE-A17Y-06 3 193854430 193854430 A T HES1 Nonsense_Mutation p.R45* 0.41 TCGA-EE-A17Y-06 3 194081290 194081290 C T LRRC15 Silent p.L167L 0.53 TCGA-EE-A17Y-06 3 3137117 3137117 G A IL5RA Missense_Mutation p.P241S 0.51 tolerated(0.07) benign(0.421) TCGA-EE-A17Y-06 3 46306898 46306898 C T CCR3 Silent p.F104F 0.49 TCGA-EE-A17Y-06 3 52521644 52521644 G A NISCH Nonsense_Mutation p.W712* 0.57 TCGA-EE-A17Y-06 3 58155360 58155360 C T FLNB Silent p.S2518S 0.44 TCGA-EE-A17Y-06 4 162841571 162841571 C T FSTL5 Missense_Mutation p.D132N 0.50 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A17Y-06 4 3495069 3495069 G A DOK7 Silent p.R452R 0.47 TCGA-EE-A17Y-06 4 47514627 47514627 G A ATP10D Missense_Mutation p.D24N 0.13 tolerated(0.31) benign(0.002) TCGA-EE-A17Y-06 4 71024103 71024103 G A C4orf40 Missense_Mutation p.R45Q 0.46 tolerated(0.6) possibly_damaging(0.776) TCGA-EE-A17Y-06 4 74350021 74350021 G A AFM Missense_Mutation p.E62K 0.48 deleterious(0) probably_damaging(0.92) TCGA-EE-A17Y-06 5 13727715 13727715 C T DNAH5 Silent p.P3978P 0.36 TCGA-EE-A17Y-06 5 137419783 137419783 G A WNT8A Missense_Mutation p.G2E 0.24 deleterious_low_confidence(0.02) benign(0.005) TCGA-EE-A17Y-06 5 13911497 13911497 G A DNAH5 Missense_Mutation p.H548Y 0.21 benign(0.415) TCGA-EE-A17Y-06 5 139193814 139193814 G A PSD2 Missense_Mutation p.G294E 0.30 tolerated(0.71) possibly_damaging(0.874) TCGA-EE-A17Y-06 5 140589663 140589663 C T PCDHB12 Missense_Mutation p.S395F 0.25 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-EE-A17Y-06 5 140603964 140603964 C T PCDHB14 Missense_Mutation p.P296L 0.29 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-EE-A17Y-06 5 151784666 151784666 C T NMUR2 Silent p.G3G 0.21 TCGA-EE-A17Y-06 5 151784667 151784667 C T NMUR2 Missense_Mutation p.G3E 0.21 tolerated_low_confidence(0.24) benign(0.034) TCGA-EE-A17Y-06 5 159661892 159661892 G A FABP6 Silent p.E152E 0.25 TCGA-EE-A17Y-06 5 160758087 160758087 C T GABRB2 Missense_Mutation p.E294K 0.26 tolerated(0.06) probably_damaging(0.99) TCGA-EE-A17Y-06 5 168123404 168123404 C T SLIT3 Missense_Mutation p.R992Q 0.18 tolerated(0.08) benign(0.028) TCGA-EE-A17Y-06 5 39202529 39202529 C T FYB Silent p.G188G 0.24 TCGA-EE-A17Y-06 5 40981538 40981538 G A C7 Missense_Mutation p.E799K 0.27 tolerated(0.21) benign(0.004) TCGA-EE-A17Y-06 5 87492003 87492003 G A TMEM161B 3'UTR 0.26 TCGA-EE-A17Y-06 6 134349725 134349725 G A SLC2A12 Missense_Mutation p.S413F 0.40 tolerated(0.12) benign(0.002) TCGA-EE-A17Y-06 6 138607931 138607931 C T KIAA1244 Missense_Mutation p.S888F 0.48 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A17Y-06 6 25798939 25798939 G A SLC17A1 Intron 0.26 TCGA-EE-A17Y-06 6 30126183 30126183 A G TRIM10 Missense_Mutation p.L250P 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A17Y-06 6 42985004 42985004 G A KLHDC3 Missense_Mutation p.R25Q 0.08 tolerated(0.2) possibly_damaging(0.733) TCGA-EE-A17Y-06 6 64408495 64408495 T A PHF3 Missense_Mutation p.N994K 0.21 tolerated(0.31) benign(0.26) TCGA-EE-A17Y-06 6 70942348 70942348 C T COL9A1 Missense_Mutation p.G814E 0.18 probably_damaging(0.998) TCGA-EE-A17Y-06 6 83933597 83933597 C T ME1 Missense_Mutation p.G444E 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A17Y-06 7 101063375 101063375 C T COL26A1 Silent p.L92L 0.33 TCGA-EE-A17Y-06 7 101840359 101840359 C T CUX1 Silent p.I567I 0.29 TCGA-EE-A17Y-06 7 117282581 117282581 C T CFTR Silent p.I1269I 0.21 TCGA-EE-A17Y-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EE-A17Y-06 7 142749478 142749478 G A OR6V1 Missense_Mutation p.G14D 0.26 deleterious(0) probably_damaging(0.994) TCGA-EE-A17Y-06 7 31855585 31855585 C T PDE1C Missense_Mutation p.G649E 0.26 tolerated_low_confidence(0.06) benign(0.046) TCGA-EE-A17Y-06 7 49842315 49842315 A T VWC2 Silent p.P235P 0.30 TCGA-EE-A17Y-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.58 TCGA-EE-A17Y-06 7 72178689 72178689 G A TYW1B Silent p.L46L 0.29 TCGA-EE-A17Y-06 8 11162449 11162449 C T MTMR9 Missense_Mutation p.L173F 0.26 deleterious(0.05) possibly_damaging(0.698) TCGA-EE-A17Y-06 8 11629028 11629028 G A NEIL2 Silent p.K24K 0.07 TCGA-EE-A17Y-06 8 124266335 124266335 C G ZHX1 Missense_Mutation p.E618Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A17Y-06 8 133192555 133192555 G A KCNQ3 Missense_Mutation p.S209F 0.25 deleterious(0) probably_damaging(0.993) TCGA-EE-A17Y-06 8 139611073 139611073 G A COL22A1 Silent p.I1418I 0.21 TCGA-EE-A17Y-06 8 22582371 22582371 C T PEBP4 Missense_Mutation p.E168K 0.18 deleterious(0) possibly_damaging(0.771) TCGA-EE-A17Y-06 8 24208805 24208805 G A ADAM28 Silent p.K720K 0.33 TCGA-EE-A17Y-06 8 24300024 24300024 C T ADAM7 Missense_Mutation p.R31C 0.25 deleterious(0) possibly_damaging(0.533) TCGA-EE-A17Y-06 8 24300054 24300054 C T ADAM7 Nonsense_Mutation p.R41* 0.25 TCGA-EE-A17Y-06 8 24324332 24324332 A G ADAM7 Missense_Mutation p.D137G 0.15 tolerated(0.22) possibly_damaging(0.874) TCGA-EE-A17Y-06 8 51571223 51571223 G A SNTG1 Silent p.K346K 0.30 TCGA-EE-A17Y-06 8 51571224 51571224 G A SNTG1 Splice_Site p.X346_splice 0.29 TCGA-EE-A17Y-06 8 73849017 73849017 C T KCNB2 Missense_Mutation p.A476V 0.24 tolerated(0.63) benign(0.008) TCGA-EE-A17Y-06 8 75276227 75276227 C T GDAP1 Silent p.G234G 0.30 TCGA-EE-A17Y-06 8 75276228 75276228 C T GDAP1 Nonsense_Mutation p.Q235* 0.31 TCGA-EE-A17Y-06 8 92330577 92330577 C T SLC26A7 Missense_Mutation p.P204L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A17Y-06 X 100532669 100532669 C T TAF7L Missense_Mutation p.E292K 0.56 deleterious(0.03) benign(0.093) TCGA-EE-A17Y-06 X 127185816 127185816 C T ACTRT1 Missense_Mutation p.E124K 0.49 deleterious(0.03) possibly_damaging(0.874) TCGA-EE-A17Y-06 X 12905615 12905615 G A TLR7 Missense_Mutation p.S663N 0.70 tolerated(0.51) benign(0.004) TCGA-EE-A17Y-06 X 135426719 135426719 C T GPR112 Missense_Mutation p.S285L 0.45 tolerated(0.13) benign(0.007) TCGA-EE-A17Y-06 X 84526007 84526007 G A ZNF711 Missense_Mutation p.E487K 0.67 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A17Z-06 10 89717727 89717727 G T PTEN Missense_Mutation p.G251V 0.95 deleterious(0) probably_damaging(0.986) TCGA-EE-A17Z-06 12 11183411 11183411 G - TAS2R31 Frame_Shift_Del p.S175* 0.08 TCGA-EE-A17Z-06 12 330229 330229 C T SLC6A13 Missense_Mutation p.R565H 0.33 tolerated(0.21) benign(0.001) TCGA-EE-A17Z-06 14 71540341 71540341 T C PCNX Silent p.P1644P 0.37 TCGA-EE-A17Z-06 14 78187103 78187103 C A SNW1 Missense_Mutation p.R400L 0.39 tolerated(0.31) benign(0.071) TCGA-EE-A17Z-06 15 99440126 99440126 G C IGF1R Missense_Mutation p.R365P 0.31 deleterious(0) probably_damaging(0.985) TCGA-EE-A17Z-06 16 14334345 14334345 C A MKL2 Intron 0.37 TCGA-EE-A17Z-06 16 72130255 72130255 G A DHX38 Missense_Mutation p.D67N 0.89 tolerated(0.3) benign(0.004) TCGA-EE-A17Z-06 17 11554609 11554609 C T DNAH9 Missense_Mutation p.A774V 0.27 benign(0.005) TCGA-EE-A17Z-06 17 43309817 43309817 G A FMNL1 Silent p.K99K 0.34 TCGA-EE-A17Z-06 19 11339679 11339679 C A DOCK6 Silent p.V917V 0.09 TCGA-EE-A17Z-06 19 14232424 14232424 G - ASF1B Frame_Shift_Del p.R108Efs*21 0.33 TCGA-EE-A17Z-06 1 161569429 161569429 C G FCGR2C Intron 0.25 TCGA-EE-A17Z-06 1 27688678 27688678 T A MAP3K6 Missense_Mutation p.D440V 0.62 deleterious(0) probably_damaging(0.996) TCGA-EE-A17Z-06 1 76877888 76877888 C G ST6GALNAC3 Missense_Mutation p.L137V 0.50 possibly_damaging(0.772) TCGA-EE-A17Z-06 1 86896584 86896584 G T CLCA2 Missense_Mutation p.G172V 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A17Z-06 20 46262905 46262905 C G NCOA3 Missense_Mutation p.R360G 0.40 deleterious(0.05) benign(0.326) TCGA-EE-A17Z-06 22 29628297 29628297 T - EMID1 Frame_Shift_Del p.G244Efs*79 0.12 TCGA-EE-A17Z-06 2 27157527 27157527 C T DPYSL5 Missense_Mutation p.A291V 0.45 deleterious(0) possibly_damaging(0.857) TCGA-EE-A17Z-06 3 47462468 47462468 T C SCAP Missense_Mutation p.M433V 0.58 tolerated(0.1) possibly_damaging(0.673) TCGA-EE-A17Z-06 5 139494456 139494458 CTT - PURA In_Frame_Del p.F233del 0.83 TCGA-EE-A17Z-06 6 132068106 132068106 G A ENPP3 3'UTR 0.33 TCGA-EE-A17Z-06 6 25983718 25983718 A G TRIM38 Missense_Mutation p.T401A 0.28 deleterious(0) possibly_damaging(0.539) TCGA-EE-A17Z-06 7 151891141 151891141 A T KMT2C Nonsense_Mutation p.L1538* 1.00 TCGA-EE-A17Z-06 8 26509836 26509836 C A DPYSL2 Missense_Mutation p.Q449K 0.13 tolerated(0.08) benign(0.239) TCGA-EE-A17Z-06 9 130965819 130965819 G A DNM1 Missense_Mutation p.G24S 0.45 deleterious(0.02) probably_damaging(0.938) TCGA-EE-A17Z-06 9 136210997 136210997 C T MED22 Silent p.E132E 0.46 TCGA-EE-A17Z-06 9 138590185 138590185 T A SOHLH1 Missense_Mutation p.E112V 0.47 deleterious(0.04) benign(0.117) TCGA-EE-A17Z-06 X 133379086 133379086 A G CCDC160 Missense_Mutation p.I86V 0.88 tolerated(0.1) benign(0.068) TCGA-EE-A17Z-06 X 24229387 24229387 C G ZFX Missense_Mutation p.T771R 0.88 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 10 112333500 112333500 T C SMC3 Missense_Mutation p.Y43H 0.46 tolerated(0.15) benign(0.005) TCGA-EE-A180-06 10 11504532 11504532 G A USP6NL Missense_Mutation p.P816S 0.41 tolerated_low_confidence(1) benign(0.006) TCGA-EE-A180-06 10 124189437 124189437 C T PLEKHA1 Missense_Mutation p.P400S 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A180-06 10 129867989 129867989 G A PTPRE Silent p.V347V 0.40 TCGA-EE-A180-06 10 17152971 17152971 G A CUBN Missense_Mutation p.P321L 0.37 tolerated(0.86) benign(0.004) TCGA-EE-A180-06 10 21148696 21148696 A C NEBL Silent p.P248P 0.43 TCGA-EE-A180-06 10 21250658 21250658 G A NEBL Silent p.I66I 0.41 TCGA-EE-A180-06 10 27422981 27422981 G A YME1L1 Silent p.N311N 0.38 TCGA-EE-A180-06 10 27702993 27702993 C T PTCHD3 Missense_Mutation p.E63K 0.40 tolerated_low_confidence(0.92) possibly_damaging(0.486) TCGA-EE-A180-06 10 35349802 35349802 C T CUL2 Missense_Mutation p.R125K 0.43 tolerated(0.51) benign(0.318) TCGA-EE-A180-06 10 37482006 37482006 G A ANKRD30A Missense_Mutation p.D787N 0.40 tolerated(0.42) possibly_damaging(0.539) TCGA-EE-A180-06 10 46961849 46961849 C T SYT15 3'Flank 0.26 TCGA-EE-A180-06 10 49409374 49409374 G A FRMPD2 Silent p.V617V 0.40 TCGA-EE-A180-06 10 49658879 49658879 G A ARHGAP22 Silent p.S447S 0.52 TCGA-EE-A180-06 10 50873054 50873054 G A CHAT Missense_Mutation p.E737K 0.40 deleterious(0.02) benign(0.013) TCGA-EE-A180-06 10 51769063 51769063 C T AGAP6 Missense_Mutation p.P393L 0.37 deleterious(0.01) benign(0.261) TCGA-EE-A180-06 10 63212550 63212550 C T TMEM26 Intron 0.42 TCGA-EE-A180-06 10 6553002 6553002 C T PRKCQ Silent p.S91S 0.34 TCGA-EE-A180-06 10 68687003 68687003 G A LRRTM3 Missense_Mutation p.R110K 0.44 tolerated(0.26) probably_damaging(0.923) TCGA-EE-A180-06 10 74034734 74034734 C T DDIT4 Silent p.L163L 0.48 TCGA-EE-A180-06 10 74886445 74886445 G A NUDT13 Missense_Mutation p.E240K 0.30 deleterious(0) probably_damaging(0.96) TCGA-EE-A180-06 10 75519788 75519788 C T SEC24C Missense_Mutation p.S165L 0.45 tolerated(0.05) benign(0.003) TCGA-EE-A180-06 10 77161015 77161015 G T ZNF503 Missense_Mutation p.P55T 0.23 deleterious(0.03) benign(0.118) TCGA-EE-A180-06 10 91162512 91162512 C T IFIT1 Silent p.A160A 0.46 TCGA-EE-A180-06 10 91196032 91196032 C T SLC16A12 Missense_Mutation p.G358E 0.48 deleterious(0.03) possibly_damaging(0.9) TCGA-EE-A180-06 10 95790940 95790940 G A PLCE1 Missense_Mutation p.R46Q 0.42 tolerated_low_confidence(1) benign(0) TCGA-EE-A180-06 11 102649474 102649474 C T MMP10 Missense_Mutation p.G168E 0.90 deleterious(0.04) possibly_damaging(0.789) TCGA-EE-A180-06 11 102825329 102825329 C T MMP13 Silent p.V123V 0.90 TCGA-EE-A180-06 11 1030958 1030958 G A MUC6 Nonsense_Mutation p.Q225* 0.28 TCGA-EE-A180-06 11 110450041 110450041 C T ARHGAP20 3'UTR 0.88 TCGA-EE-A180-06 11 111965693 111965693 G T SDHD Nonstop_Mutation p.*160Lext*3 0.54 TCGA-EE-A180-06 11 113210126 113210126 T A TTC12 Silent p.L252L 0.91 TCGA-EE-A180-06 11 113849954 113849954 G A HTR3A Splice_Site p.X80_splice 0.89 TCGA-EE-A180-06 11 1158055 1158055 C T MUC5AC Silent p.H345H 0.17 TCGA-EE-A180-06 11 117779388 117779388 G A TMPRSS13 Silent p.T407T 1.00 TCGA-EE-A180-06 11 117779389 117779389 G A TMPRSS13 Missense_Mutation p.T407I 1.00 deleterious(0.02) possibly_damaging(0.477) TCGA-EE-A180-06 11 119029561 119029561 C T ABCG4 Silent p.F453F 0.90 TCGA-EE-A180-06 11 119290135 119290135 C T THY1 Missense_Mutation p.D157N 0.94 tolerated(0.07) benign(0.042) TCGA-EE-A180-06 11 120998881 120998881 C T TECTA Missense_Mutation p.P732L 0.87 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A180-06 11 12183807 12183807 C T MICAL2 Silent p.L35L 0.50 TCGA-EE-A180-06 11 124134891 124134891 G A OR8G5 Missense_Mutation p.E57K 0.84 deleterious(0.03) benign(0.051) TCGA-EE-A180-06 11 17515900 17515900 C T USH1C Silent p.R893R 0.46 TCGA-EE-A180-06 11 20178201 20178201 G A DBX1 Silent p.S236S 0.45 TCGA-EE-A180-06 11 21581792 21581792 A G NELL1 Missense_Mutation p.N615S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 11 31128392 31128392 G A DCDC1 Missense_Mutation p.S568L 0.46 tolerated(0.21) benign(0.001) TCGA-EE-A180-06 11 31669375 31669375 C T ELP4 Silent p.N338N 0.40 TCGA-EE-A180-06 11 33667274 33667274 C T KIAA1549L Missense_Mutation p.P1521S 0.39 tolerated(0.34) benign(0) TCGA-EE-A180-06 11 3380508 3380508 G A ZNF195 Missense_Mutation p.P577L 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A180-06 11 36596731 36596731 C T RAG1 Missense_Mutation p.S626L 0.49 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EE-A180-06 11 40136444 40136444 C T LRRC4C Missense_Mutation p.D467N 0.47 tolerated(0.09) benign(0.003) TCGA-EE-A180-06 11 4407076 4407076 G A TRIM21 Silent p.I289I 0.47 TCGA-EE-A180-06 11 44130794 44130794 C T EXT2 Missense_Mutation p.P229L 0.45 tolerated(0.65) benign(0.005) TCGA-EE-A180-06 11 4566851 4566851 G C OR52M1 Missense_Mutation p.G144A 0.49 tolerated(1) benign(0.02) TCGA-EE-A180-06 11 46564027 46564027 G A AMBRA1 Nonsense_Mutation p.Q424* 0.56 TCGA-EE-A180-06 11 4674527 4674527 C T OR51E1 Silent p.F257F 0.44 TCGA-EE-A180-06 11 4703277 4703277 C T OR51E2 Missense_Mutation p.R222Q 0.44 tolerated(0.14) benign(0.017) TCGA-EE-A180-06 11 48239109 48239109 G A OR4B1 Missense_Mutation p.G250R 0.45 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A180-06 11 49831858 49831858 C T RP11-707M1.1 RNA 0.42 TCGA-EE-A180-06 11 5269676 5269676 G A HBG1 Silent p.F119F 0.33 TCGA-EE-A180-06 11 5373410 5373410 G A OR51B6 Missense_Mutation p.G225S 0.53 tolerated(0.93) benign(0.044) TCGA-EE-A180-06 11 55594854 55594854 C T OR5L2 Missense_Mutation p.R54W 0.35 deleterious(0) benign(0.001) TCGA-EE-A180-06 11 55904317 55904317 C T OR8J3 Missense_Mutation p.R293K 0.30 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A180-06 11 5632103 5632103 C T TRIM6 Missense_Mutation p.P361L 0.42 tolerated(0.78) benign(0.012) TCGA-EE-A180-06 11 56344834 56344834 G A OR5M10 Missense_Mutation p.R122C 0.28 deleterious(0.03) possibly_damaging(0.88) TCGA-EE-A180-06 11 56756888 56756888 C T OR5AK2 Missense_Mutation p.S167F 0.56 deleterious(0.02) benign(0.049) TCGA-EE-A180-06 11 5686459 5686459 G A TRIM5 Silent p.I354I 0.43 TCGA-EE-A180-06 11 5799460 5799460 A T OR52N5 Silent p.I135I 0.49 TCGA-EE-A180-06 11 57995630 57995630 G A OR10Q1 Missense_Mutation p.R240C 0.57 tolerated(0.08) benign(0.052) TCGA-EE-A180-06 11 58034854 58034854 G A OR10W1 Silent p.F159F 0.65 TCGA-EE-A180-06 11 5906360 5906360 C A OR52E4 Missense_Mutation p.L280M 0.23 tolerated(0.07) probably_damaging(0.961) TCGA-EE-A180-06 11 59348978 59348978 C T OSBP Silent p.K576K 0.28 TCGA-EE-A180-06 11 60777108 60777108 C T CD6 Silent p.F282F 0.62 TCGA-EE-A180-06 11 63233637 63233637 C T HRASLS5 Missense_Mutation p.G231E 0.65 tolerated(0.3) probably_damaging(0.997) TCGA-EE-A180-06 11 63276002 63276002 G A LGALS12 Intron 0.38 TCGA-EE-A180-06 11 63672440 63672440 C T MARK2 Missense_Mutation p.P620L 0.33 deleterious(0.01) benign(0.341) TCGA-EE-A180-06 11 64622297 64622297 G A EHD1 Silent p.F371F 0.63 TCGA-EE-A180-06 11 65321219 65321219 G A LTBP3 Nonsense_Mutation p.Q273* 0.29 TCGA-EE-A180-06 11 66100731 66100731 G A RIN1 Nonsense_Mutation p.Q625* 0.62 TCGA-EE-A180-06 11 66192208 66192208 C T NPAS4 Missense_Mutation p.P616L 0.62 deleterious(0) benign(0.078) TCGA-EE-A180-06 11 66322680 66322680 G A CTD-3074O7.2 3'Flank 0.59 TCGA-EE-A180-06 11 66631255 66631255 C T PC Missense_Mutation p.R453Q 0.34 deleterious(0) probably_damaging(0.959) TCGA-EE-A180-06 11 66807384 66807384 G A SYT12 Missense_Mutation p.G111R 0.32 deleterious_low_confidence(0) benign(0.16) TCGA-EE-A180-06 11 68518115 68518115 G A MTL5 Missense_Mutation p.P5L 0.93 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A180-06 11 68518116 68518116 G A MTL5 Missense_Mutation p.P5S 0.97 tolerated_low_confidence(0.07) unknown(0) TCGA-EE-A180-06 11 71850921 71850921 G A FOLR3 3'UTR 0.92 TCGA-EE-A180-06 11 74013522 74013522 G A P4HA3 Silent p.G153G 0.91 TCGA-EE-A180-06 11 76903241 76903241 C T MYO7A Missense_Mutation p.P1357L 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A180-06 11 7818360 7818360 G T OR5P2 Missense_Mutation p.L44I 0.56 deleterious(0.01) benign(0.32) TCGA-EE-A180-06 11 8704299 8704299 C T RPL27A 5'UTR 0.39 TCGA-EE-A180-06 11 8704300 8704300 C T RPL27A 5'UTR 0.39 TCGA-EE-A180-06 11 8947376 8947376 C T C11orf16 Missense_Mutation p.G280S 0.52 tolerated(0.4) benign(0.135) TCGA-EE-A180-06 11 92087538 92087538 G A FAT3 Missense_Mutation p.D754N 0.95 probably_damaging(1) TCGA-EE-A180-06 11 93837757 93837757 G A HEPHL1 Missense_Mutation p.G916R 0.78 tolerated(0.32) benign(0.217) TCGA-EE-A180-06 11 9861155 9861155 G A SBF2 Silent p.F1115F 0.44 TCGA-EE-A180-06 11 99690452 99690452 C T CNTN5 Missense_Mutation p.S78F 0.57 deleterious_low_confidence(0) benign(0.009) TCGA-EE-A180-06 12 10541470 10541470 G A KLRK1 5'UTR 0.45 TCGA-EE-A180-06 12 109703275 109703275 A G ACACB Missense_Mutation p.I2399V 0.53 tolerated(0.43) benign(0.001) TCGA-EE-A180-06 12 10978272 10978272 G A TAS2R10 Silent p.S199S 0.53 TCGA-EE-A180-06 12 109863822 109863822 C T MYO1H Silent p.I583I 0.27 TCGA-EE-A180-06 12 111321968 111321968 G A CCDC63 Missense_Mutation p.E330K 0.62 deleterious(0) probably_damaging(0.981) TCGA-EE-A180-06 12 111786169 111786169 C T CUX2 3'UTR 0.58 TCGA-EE-A180-06 12 112920001 112920002 - T PTPN11 Frame_Shift_Ins p.G407Wfs*39 0.19 TCGA-EE-A180-06 12 112926270 112926270 C T PTPN11 Missense_Mutation p.T468M 0.56 deleterious(0) probably_damaging(0.941) TCGA-EE-A180-06 12 117691489 117691489 C T NOS1 Missense_Mutation p.D902N 0.62 tolerated(0.15) benign(0.013) TCGA-EE-A180-06 12 122217508 122217508 G A RHOF Missense_Mutation p.R178W 0.59 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A180-06 12 124311333 124311333 C T DNAH10 Missense_Mutation p.P1309S 0.29 benign(0.11) TCGA-EE-A180-06 12 131466439 131466439 T G GPR133 Missense_Mutation p.F107L 0.67 tolerated_low_confidence(0.1) benign(0.246) TCGA-EE-A180-06 12 132405686 132405686 G A ULK1 Silent p.E1001E 0.33 TCGA-EE-A180-06 12 133225928 133225928 G A POLE Silent p.A1323A 0.36 TCGA-EE-A180-06 12 133225929 133225929 G A POLE Missense_Mutation p.A1323V 0.35 tolerated(0.12) benign(0.13) TCGA-EE-A180-06 12 16050871 16050871 C T STRAP Missense_Mutation p.H232Y 0.29 tolerated(0.09) benign(0.01) TCGA-EE-A180-06 12 336800 336800 G A SLC6A13 Missense_Mutation p.S289F 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 12 34179674 34179674 C T ALG10 Missense_Mutation p.R416C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 12 42858229 42858229 G A PRICKLE1 Missense_Mutation p.S536L 0.62 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 12 44902725 44902725 C T NELL2 Missense_Mutation p.E865K 0.62 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-EE-A180-06 12 46591542 46591542 G A SLC38A1 Silent p.I441I 0.20 TCGA-EE-A180-06 12 4737408 4737408 G A AKAP3 Silent p.I220I 0.30 TCGA-EE-A180-06 12 49445230 49445230 G A KMT2D Missense_Mutation p.R746W 0.24 unknown(0) TCGA-EE-A180-06 12 50190819 50190819 C T NCKAP5L Missense_Mutation p.G275D 0.54 tolerated_low_confidence(0.35) benign(0.28) TCGA-EE-A180-06 12 5155171 5155171 G A KCNA5 3'UTR 0.37 TCGA-EE-A180-06 12 52306883 52306883 G A ACVRL1 Missense_Mutation p.G21E 0.24 tolerated(0.26) benign(0.221) TCGA-EE-A180-06 12 52946769 52946769 G A KRT71 Silent p.S31S 0.57 TCGA-EE-A180-06 12 53242587 53242587 G A KRT78 Missense_Mutation p.S43F 0.51 deleterious(0.03) possibly_damaging(0.485) TCGA-EE-A180-06 12 53605501 53605501 G A RARG Missense_Mutation p.P442S 0.65 tolerated_low_confidence(0.17) benign(0.026) TCGA-EE-A180-06 12 55420957 55420957 G A NEUROD4 Missense_Mutation p.S245N 0.61 tolerated(0.72) benign(0.152) TCGA-EE-A180-06 12 55794744 55794744 C T OR6C65 Silent p.I144I 0.59 TCGA-EE-A180-06 12 56733928 56733928 C T IL23A 3'UTR 0.37 TCGA-EE-A180-06 12 56755236 56755236 C A APOF Missense_Mutation p.G252W 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 12 6030448 6030448 T C ANO2 Missense_Mutation p.K94E 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 12 6161810 6161810 C T VWF Missense_Mutation p.M695I 0.34 tolerated(0.06) benign(0.007) TCGA-EE-A180-06 12 6701683 6701683 G A CHD4 Nonsense_Mutation p.Q942* 0.22 TCGA-EE-A180-06 12 6701684 6701684 G A CHD4 Silent p.D941D 0.21 TCGA-EE-A180-06 12 7526034 7526034 G A CD163L1 Silent p.F1204F 0.57 TCGA-EE-A180-06 12 75601706 75601706 C T KCNC2 Missense_Mutation p.E20K 0.31 deleterious(0) benign(0.311) TCGA-EE-A180-06 12 78516170 78516170 C T NAV3 Silent p.L1400L 0.27 TCGA-EE-A180-06 12 82752017 82752017 C T CCDC59 Missense_Mutation p.G47R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 12 88390263 88390263 C T C12orf50 Silent p.G123G 0.64 TCGA-EE-A180-06 12 9317890 9317890 G A PZP Silent p.L778L 0.30 TCGA-EE-A180-06 12 96694102 96694102 T C CDK17 Missense_Mutation p.K194E 0.66 deleterious(0) possibly_damaging(0.609) TCGA-EE-A180-06 13 103436836 103436836 T - KDELC1 3'UTR 0.49 TCGA-EE-A180-06 13 20409705 20409705 G A ZMYM5 3'Flank 0.92 TCGA-EE-A180-06 13 42524105 42524105 G A VWA8 Missense_Mutation p.P70S 1.00 deleterious(0.03) possibly_damaging(0.574) TCGA-EE-A180-06 13 76395638 76395638 C T LMO7 Missense_Mutation p.P612S 0.97 deleterious(0.02) probably_damaging(1) TCGA-EE-A180-06 13 97640066 97640066 G A OXGR1 5'UTR 0.96 TCGA-EE-A180-06 14 101510585 101510585 G A MIR1185-2 RNA 0.23 TCGA-EE-A180-06 14 104561948 104561948 C T ASPG Silent p.F128F 0.56 TCGA-EE-A180-06 14 106322074 106322074 C T IGHM Missense_Mutation p.E84K 0.31 tolerated(0.37) benign(0.006) TCGA-EE-A180-06 14 106471512 106471512 C T IGHV1-3 Missense_Mutation p.E29K 0.19 deleterious(0) possibly_damaging(0.894) TCGA-EE-A180-06 14 106478214 106478214 G A IGHV4-4 Missense_Mutation p.L82F 0.19 tolerated_low_confidence(0.17) probably_damaging(0.973) TCGA-EE-A180-06 14 20692112 20692112 G A OR11H6 Missense_Mutation p.G82R 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A180-06 14 20849134 20849134 T C TEP1 Missense_Mutation p.E1573G 0.25 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A180-06 14 20869274 20869274 G A TEP1 Missense_Mutation p.S473F 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A180-06 14 21896025 21896025 C T CHD8 Intron 0.62 TCGA-EE-A180-06 14 22133747 22133747 G A OR4E2 Missense_Mutation p.G151R 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A180-06 14 22616359 22616359 G A TRAV27 Missense_Mutation p.G34R 0.21 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A180-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.60 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A180-06 14 23868031 23868031 C T MYH6 Silent p.K599K 0.27 TCGA-EE-A180-06 14 23884999 23884999 C T MYH7 Missense_Mutation p.D1666N 0.67 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A180-06 14 24473593 24473593 G A DHRS4L2 3'UTR 0.29 TCGA-EE-A180-06 14 26917883 26917883 C - NOVA1 Frame_Shift_Del p.G269Dfs*21 0.27 TCGA-EE-A180-06 14 36840940 36840940 C T DPPA3P2 RNA 0.57 TCGA-EE-A180-06 14 50100934 50100934 T C DNAAF2 Missense_Mutation p.R312G 0.34 deleterious(0) possibly_damaging(0.451) TCGA-EE-A180-06 14 55510993 55510993 C T SOCS4 Missense_Mutation p.P412S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 14 59113603 59113603 C T DACT1 Silent p.F754F 0.30 TCGA-EE-A180-06 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A180-06 14 65035145 65035145 G A PPP1R36 Silent p.K171K 0.22 TCGA-EE-A180-06 14 65035159 65035159 A C PPP1R36 Missense_Mutation p.Y176S 0.19 tolerated(0.06) possibly_damaging(0.756) TCGA-EE-A180-06 14 65268000 65268000 C T SPTB Intron 0.60 TCGA-EE-A180-06 14 65406161 65406161 C T GPX2 3'UTR 0.33 TCGA-EE-A180-06 14 67589068 67589068 G A GPHN Silent p.T574T 0.32 TCGA-EE-A180-06 14 72190408 72190408 G A SIPA1L1 Missense_Mutation p.S1439N 0.60 tolerated(0.13) probably_damaging(0.914) TCGA-EE-A180-06 14 73219993 73219993 G A DPF3 Missense_Mutation p.R94W 0.05 tolerated(0.13) probably_damaging(0.942) TCGA-EE-A180-06 14 88729750 88729750 C T KCNK10 Silent p.G66G 0.30 TCGA-EE-A180-06 14 95111385 95111385 C T SERPINA13P RNA 0.59 TCGA-EE-A180-06 14 96134489 96134489 G A TCL6 Intron 0.58 TCGA-EE-A180-06 14 96707829 96707829 G A BDKRB2 Silent p.G388G 0.31 TCGA-EE-A180-06 14 99697843 99697843 G A BCL11B Missense_Mutation p.S160F 0.36 deleterious(0.01) benign(0.081) TCGA-EE-A180-06 15 101718317 101718317 T C CHSY1 Missense_Mutation p.N562S 0.58 tolerated(0.33) benign(0.012) TCGA-EE-A180-06 15 25449539 25449539 G A SNORD115-19 RNA 0.31 TCGA-EE-A180-06 15 31358302 31358302 A G TRPM1 Missense_Mutation p.I273T 0.39 deleterious(0.01) possibly_damaging(0.616) TCGA-EE-A180-06 15 34628871 34628871 G A SLC12A6 Missense_Mutation p.P4L 0.41 tolerated_low_confidence(0.59) benign(0) TCGA-EE-A180-06 15 41388426 41388426 G A INO80 Missense_Mutation p.A28V 0.38 deleterious(0) benign(0.033) TCGA-EE-A180-06 15 44876328 44876331 GTTC TTT SPG11 Frame_Shift_Del p.N1850Kfs*6 0.27 TCGA-EE-A180-06 15 45047410 45047410 C T TRIM69 Missense_Mutation p.P107S 0.47 tolerated(0.51) benign(0.008) TCGA-EE-A180-06 15 45051047 45051047 C T TRIM69 Missense_Mutation p.L270F 0.27 deleterious(0.02) probably_damaging(1) TCGA-EE-A180-06 15 50152379 50152379 A G ATP8B4 3'UTR 0.51 TCGA-EE-A180-06 15 64970529 64970529 C T ZNF609 Missense_Mutation p.P1206L 0.39 tolerated(0.1) benign(0.149) TCGA-EE-A180-06 15 65214128 65214128 G A ANKDD1A Missense_Mutation p.M92I 0.39 deleterious(0.03) possibly_damaging(0.53) TCGA-EE-A180-06 15 68987482 68987482 G A CORO2B Missense_Mutation p.G74S 0.59 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A180-06 15 72690730 72690730 G A TMEM202 Silent p.G21G 0.28 TCGA-EE-A180-06 15 91017317 91017317 C T IQGAP1 Nonsense_Mutation p.Q843* 0.18 TCGA-EE-A180-06 15 93522380 93522380 T C CHD2 Silent p.L915L 0.59 TCGA-EE-A180-06 15 99514379 99514379 G A PGPEP1L Silent p.S10S 0.21 TCGA-EE-A180-06 16 11778030 11778030 G A TXNDC11 Missense_Mutation p.P742L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 16 1400944 1400944 G A TSR3 Silent p.D130D 0.36 TCGA-EE-A180-06 16 17232251 17232251 G A XYLT1 Silent p.S575S 0.27 TCGA-EE-A180-06 16 17235161 17235161 C T XYLT1 Missense_Mutation p.G479E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 16 1816383 1816383 C - MAPK8IP3 Frame_Shift_Del p.P931Rfs*68 0.35 TCGA-EE-A180-06 16 19195389 19195389 G C SYT17 Missense_Mutation p.G291R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 16 19522235 19522235 G A GDE1 Silent p.L157L 0.36 TCGA-EE-A180-06 16 20634840 20634840 C T ACSM1 Missense_Mutation p.E568K 0.46 tolerated(0.3) possibly_damaging(0.745) TCGA-EE-A180-06 16 2378600 2378600 G A ABCA3 5'UTR 0.54 TCGA-EE-A180-06 16 28497790 28497790 G A CLN3 Silent p.S185S 0.39 TCGA-EE-A180-06 16 28497791 28497791 G A CLN3 Missense_Mutation p.S185F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 16 28898548 28898548 C T ATP2A1 Missense_Mutation p.P195S 0.41 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A180-06 16 4431025 4431025 C T VASN Silent p.D49D 0.41 TCGA-EE-A180-06 16 46629531 46629531 G C SHCBP1 Missense_Mutation p.T466R 0.04 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A180-06 16 4944619 4944619 C T PPL Missense_Mutation p.G415S 0.49 tolerated(0.43) possibly_damaging(0.839) TCGA-EE-A180-06 16 5058535 5058535 C T SEC14L5 Silent p.A562A 0.56 TCGA-EE-A180-06 16 5064884 5064884 C T SEC14L5 Silent p.S668S 0.49 TCGA-EE-A180-06 16 5094556 5094556 C T C16orf89 3'UTR 0.62 TCGA-EE-A180-06 16 55532201 55532201 G A MMP2 Missense_Mutation p.G537E 0.30 deleterious(0.02) probably_damaging(0.91) TCGA-EE-A180-06 16 58314339 58314339 C T PRSS54 Missense_Mutation p.G326E 0.41 tolerated(0.8) benign(0) TCGA-EE-A180-06 16 66621933 66621933 G A CMTM2 Missense_Mutation p.E220K 0.40 tolerated(0.36) unknown(0) TCGA-EE-A180-06 16 66842427 66842427 G A NAE1 Missense_Mutation p.P443S 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 16 67038037 67038037 C T CES4A Silent p.D330D 0.44 TCGA-EE-A180-06 16 69366610 69366610 C G COG8 Intron 0.47 TCGA-EE-A180-06 16 700084 700084 G A WDR90 Missense_Mutation p.G66R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 16 70065808 70065808 G A MIR1972-2 3'Flank 0.32 TCGA-EE-A180-06 16 70841837 70841837 G A HYDIN Silent p.I5004I 0.40 TCGA-EE-A180-06 16 72832404 72832404 C A ZFHX3 Missense_Mutation p.V1393L 0.39 probably_damaging(0.97) TCGA-EE-A180-06 16 72984850 72984850 G A ZFHX3 Missense_Mutation p.P912S 0.44 possibly_damaging(0.824) TCGA-EE-A180-06 16 7383011 7383011 G C RBFOX1 Silent p.A3A 0.47 TCGA-EE-A180-06 16 77228347 77228347 C T MON1B Silent p.I197I 0.47 TCGA-EE-A180-06 16 82033760 82033760 G A SDR42E1 Silent p.T46T 0.40 TCGA-EE-A180-06 16 830786 830786 C T MSLNL Missense_Mutation p.R72H 0.45 benign(0.047) TCGA-EE-A180-06 16 83994304 83994304 G A OSGIN1 Missense_Mutation p.R112Q 0.35 tolerated(0.47) benign(0.001) TCGA-EE-A180-06 16 89922068 89922068 A G SPIRE2 Missense_Mutation p.I318V 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A180-06 16 90128336 90128336 G A PRDM7 Missense_Mutation p.S292F 0.42 deleterious(0) probably_damaging(0.915) TCGA-EE-A180-06 16 9857975 9857975 G A GRIN2A Silent p.P1142P 0.52 TCGA-EE-A180-06 17 10542696 10542696 G A MYH3 Silent p.A1007A 0.92 TCGA-EE-A180-06 17 27183362 27183362 C T ERAL1 Missense_Mutation p.P122S 0.95 deleterious(0) probably_damaging(0.99) TCGA-EE-A180-06 17 27448185 27448185 G A MYO18A Silent p.P472P 0.88 TCGA-EE-A180-06 17 29562694 29562694 G A NF1 Nonsense_Mutation p.W1258* 0.87 TCGA-EE-A180-06 17 33255107 33255107 A G CCT6B Missense_Mutation p.V518A 0.91 deleterious(0) probably_damaging(0.944) TCGA-EE-A180-06 17 37687572 37687572 C T CDK12 3'UTR 0.94 TCGA-EE-A180-06 17 38151308 38151308 C T PSMD3 Silent p.F361F 0.91 TCGA-EE-A180-06 17 40837994 40837994 A T CNTNAP1 Silent p.P245P 0.90 TCGA-EE-A180-06 17 43011673 43011673 C T KIF18B Silent p.L271L 0.40 TCGA-EE-A180-06 17 45234366 45234366 G A CDC27 Missense_Mutation p.S252F 0.07 deleterious(0.01) benign(0.255) TCGA-EE-A180-06 17 48273994 48273994 C T COL1A1 Missense_Mutation p.G281D 0.89 unknown(0) TCGA-EE-A180-06 17 49371371 49371371 C T UTP18 Silent p.A537A 0.82 TCGA-EE-A180-06 17 55943871 55943871 G A CUEDC1 Silent p.P376P 0.91 TCGA-EE-A180-06 17 57287389 57287389 G T SMG8 5'UTR 0.89 TCGA-EE-A180-06 17 58512742 58512742 C T C17orf64 3'Flank 1.00 TCGA-EE-A180-06 17 62121500 62121500 C T ERN1 Missense_Mutation p.D928N 0.91 tolerated(0.24) benign(0.049) TCGA-EE-A180-06 17 63534310 63534310 G A AXIN2 Intron 0.96 TCGA-EE-A180-06 17 71166472 71166472 G A SSTR2 Silent p.G338G 0.94 TCGA-EE-A180-06 17 7193752 7193752 G A YBX2 Missense_Mutation p.P188S 0.91 tolerated(0.19) possibly_damaging(0.641) TCGA-EE-A180-06 17 72541018 72541018 G A CD300C Missense_Mutation p.R44C 0.96 tolerated(0.08) benign(0.083) TCGA-EE-A180-06 17 72915624 72915624 C T USH1G Missense_Mutation p.R436Q 0.90 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 17 7386012 7386012 G A SLC35G6 Missense_Mutation p.G237S 0.91 tolerated(0.89) benign(0.097) TCGA-EE-A180-06 17 75303273 75303273 G A SEPT9 Missense_Mutation p.G24S 0.94 tolerated_low_confidence(0.5) possibly_damaging(0.855) TCGA-EE-A180-06 17 80039493 80039493 G A FASN Silent p.A2130A 0.87 TCGA-EE-A180-06 17 8243772 8243772 C T ODF4 Missense_Mutation p.L135F 0.87 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A180-06 18 12785720 12785720 G A PTPN2 3'UTR 0.31 TCGA-EE-A180-06 18 13884873 13884873 C T MC2R Missense_Mutation p.M215I 0.68 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A180-06 18 28576896 28576896 C T DSC3 Missense_Mutation p.G785E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 18 29125756 29125756 G A DSG2 Missense_Mutation p.E803K 0.24 deleterious(0.03) possibly_damaging(0.734) TCGA-EE-A180-06 18 29848109 29848109 G A GAREM Missense_Mutation p.P786S 0.60 tolerated(0.07) possibly_damaging(0.474) TCGA-EE-A180-06 18 3067469 3067469 C T MYOM1 Missense_Mutation p.D1617N 0.32 deleterious(0.05) benign(0.135) TCGA-EE-A180-06 18 33077915 33077915 C T INO80C 5'Flank 0.21 TCGA-EE-A180-06 18 34853016 34853016 C T CELF4 Missense_Mutation p.M304I 0.63 tolerated(0.21) benign(0.002) TCGA-EE-A180-06 18 42531194 42531194 C G SETBP1 Missense_Mutation p.A630G 0.54 tolerated(0.18) possibly_damaging(0.863) TCGA-EE-A180-06 18 56363682 56363682 C T MALT1 Missense_Mutation p.P154L 0.57 deleterious(0.04) probably_damaging(1) TCGA-EE-A180-06 18 61322768 61322768 G A SERPINB3 3'UTR 0.71 TCGA-EE-A180-06 18 61569069 61569069 C T SERPINB2 Missense_Mutation p.P211S 0.20 tolerated(0.06) possibly_damaging(0.742) TCGA-EE-A180-06 18 657986 657986 G A C18orf56 Missense_Mutation p.P88S 0.72 possibly_damaging(0.803) TCGA-EE-A180-06 18 66721281 66721281 G A CCDC102B Silent p.L483L 0.71 TCGA-EE-A180-06 18 77623970 77623970 C T KCNG2 Silent p.F101F 0.31 TCGA-EE-A180-06 19 1048932 1048932 C T ABCA7 Missense_Mutation p.R770W 0.51 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A180-06 19 1117449 1117449 A G SBNO2 Missense_Mutation p.L526P 0.40 tolerated(0.06) benign(0.008) TCGA-EE-A180-06 19 11510622 11510622 G A RGL3 Missense_Mutation p.S558F 0.28 deleterious(0) unknown(0) TCGA-EE-A180-06 19 13427930 13427930 G A CACNA1A Silent p.F517F 0.47 TCGA-EE-A180-06 19 14023144 14023144 C T CC2D1A Missense_Mutation p.P69S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 19 15124564 15124564 G A CCDC105 Missense_Mutation p.M217I 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A180-06 19 16060671 16060671 C T OR10H4 Missense_Mutation p.P285L 0.23 deleterious(0) possibly_damaging(0.848) TCGA-EE-A180-06 19 17759783 17759783 G A UNC13A Nonsense_Mutation p.Q512* 0.53 TCGA-EE-A180-06 19 17972140 17972140 C T RPL18A Silent p.T19T 0.51 TCGA-EE-A180-06 19 20808178 20808178 C A ZNF626 Missense_Mutation p.G169W 0.21 deleterious(0) probably_damaging(0.981) TCGA-EE-A180-06 19 22780122 22780122 C T RN7SL860P 5'Flank 0.66 TCGA-EE-A180-06 19 3179147 3179147 C T S1PR4 Silent p.F119F 0.33 TCGA-EE-A180-06 19 3281236 3281236 G A CELF5 Missense_Mutation p.D215N 0.58 deleterious(0) probably_damaging(0.965) TCGA-EE-A180-06 19 37880055 37880055 C T ZNF527 Silent p.S368S 0.28 TCGA-EE-A180-06 19 38858706 38858706 G A CATSPERG Nonsense_Mutation p.W983* 0.26 TCGA-EE-A180-06 19 38934361 38934361 C G RYR1 Missense_Mutation p.L117V 0.30 probably_damaging(0.991) TCGA-EE-A180-06 19 38964173 38964173 C T RYR1 Missense_Mutation p.P1308S 0.66 benign(0.082) TCGA-EE-A180-06 19 39515911 39515911 C T FBXO27 3'UTR 0.61 TCGA-EE-A180-06 19 39517561 39517561 G A FBXO27 Silent p.F219F 0.29 TCGA-EE-A180-06 19 39915335 39915335 G A PLEKHG2 Missense_Mutation p.D1188N 0.29 deleterious_low_confidence(0.04) benign(0.025) TCGA-EE-A180-06 19 41096275 41096275 G C SHKBP1 Missense_Mutation p.S572T 0.05 tolerated(0.18) benign(0.015) TCGA-EE-A180-06 19 42231220 42231220 G T CEACAM5 Missense_Mutation p.G698V 0.30 tolerated_low_confidence(0.23) benign(0.341) TCGA-EE-A180-06 19 42265924 42265924 C T CEACAM6 Missense_Mutation p.P251S 0.62 tolerated(0.5) benign(0.044) TCGA-EE-A180-06 19 42848673 42848673 C T MEGF8 Silent p.A623A 0.31 TCGA-EE-A180-06 19 43243030 43243030 C T PSG3 Silent p.G92G 0.24 TCGA-EE-A180-06 19 4338769 4338769 C A STAP2 5'UTR 0.10 TCGA-EE-A180-06 19 43699191 43699191 C T PSG4 Missense_Mutation p.R315Q 0.37 tolerated(0.17) possibly_damaging(0.553) TCGA-EE-A180-06 19 44492639 44492639 C T ZNF155 5'UTR 0.59 TCGA-EE-A180-06 19 44891044 44891044 G A ZNF285 Missense_Mutation p.P455S 0.57 deleterious(0.01) possibly_damaging(0.491) TCGA-EE-A180-06 19 45493754 45493754 G A CLPTM1 Missense_Mutation p.D412N 0.34 deleterious(0) probably_damaging(0.956) TCGA-EE-A180-06 19 45728119 45728119 G A EXOC3L2 Missense_Mutation p.R153W 0.81 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A180-06 19 45885815 45885815 C T PPP1R13L Silent p.Q806Q 0.28 TCGA-EE-A180-06 19 46094564 46094564 G A GPR4 Silent p.F187F 0.33 TCGA-EE-A180-06 19 47824132 47824132 C T C5AR1 3'UTR 0.54 TCGA-EE-A180-06 19 49714445 49714445 G A TRPM4 Missense_Mutation p.G1187R 0.66 tolerated(0.09) benign(0.211) TCGA-EE-A180-06 19 51020887 51020887 G A LRRC4B Missense_Mutation p.H695Y 0.27 tolerated_low_confidence(0.58) benign(0.296) TCGA-EE-A180-06 19 51219675 51219675 C T SHANK1 Missense_Mutation p.A106T 0.23 benign(0.066) TCGA-EE-A180-06 19 51527622 51527622 G A KLK11 Intron 0.35 TCGA-EE-A180-06 19 51671056 51671056 G A CTD-3187F8.14 Intron 0.41 TCGA-EE-A180-06 19 51919298 51919298 C T SIGLEC10 Missense_Mutation p.R293K 0.44 deleterious(0.05) probably_damaging(0.974) TCGA-EE-A180-06 19 53645627 53645627 A - ZNF347 Frame_Shift_Del p.Y153Tfs*6 0.41 TCGA-EE-A180-06 19 53793621 53793621 C T BIRC8 Missense_Mutation p.G3S 0.57 tolerated(0.27) benign(0) TCGA-EE-A180-06 19 55143953 55143953 C T LILRB1 Missense_Mutation p.P234S 0.52 tolerated(0.13) benign(0.047) TCGA-EE-A180-06 19 55716775 55716775 G C PTPRH Missense_Mutation p.P180A 0.60 unknown(0) TCGA-EE-A180-06 19 57646628 57646628 C T ZIM3 Silent p.G359G 0.53 TCGA-EE-A180-06 19 875301 875301 G A MED16 Missense_Mutation p.P572S 0.56 tolerated(0.13) possibly_damaging(0.876) TCGA-EE-A180-06 19 9061767 9061767 G A MUC16 Missense_Mutation p.S8560F 0.56 unknown(0) TCGA-EE-A180-06 19 9869040 9869040 G A ZNF846 Missense_Mutation p.S238F 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A180-06 1 100155125 100155125 G A PALMD Missense_Mutation p.D437N 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 109358785 109358785 G A AKNAD1 3'UTR 0.37 TCGA-EE-A180-06 1 109554018 109554018 C T WDR47 Missense_Mutation p.G224E 0.41 deleterious(0) possibly_damaging(0.636) TCGA-EE-A180-06 1 114440554 114440554 T C AP4B1 Missense_Mutation p.T404A 0.33 tolerated(0.31) benign(0.042) TCGA-EE-A180-06 1 117660703 117660703 A T TRIM45 Missense_Mutation p.I392N 0.46 deleterious(0) probably_damaging(0.971) TCGA-EE-A180-06 1 12785440 12785440 C T AADACL3 Missense_Mutation p.S177L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 145562002 145562002 C A ANKRD35 Missense_Mutation p.Q564K 0.23 tolerated(0.06) benign(0.292) TCGA-EE-A180-06 1 147230857 147230857 C T GJA5 Missense_Mutation p.E164K 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 150482583 150482583 C T ECM1 Missense_Mutation p.P131S 0.71 tolerated(0.19) benign(0.006) TCGA-EE-A180-06 1 150525609 150525609 A C ADAMTSL4 Missense_Mutation p.Q105P 0.69 tolerated(0.14) benign(0.004) TCGA-EE-A180-06 1 152278522 152278522 G A FLG Missense_Mutation p.S2947F 0.29 benign(0.083) TCGA-EE-A180-06 1 153122444 153122444 G A SPRR2G Missense_Mutation p.P48L 0.66 unknown(0) TCGA-EE-A180-06 1 153749199 153749199 C T SLC27A3 Silent p.T338T 0.63 TCGA-EE-A180-06 1 154130077 154130077 C T NUP210L 5'Flank 0.22 TCGA-EE-A180-06 1 155170795 155170795 C T THBS3 Missense_Mutation p.D481N 0.72 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 1 156508826 156508826 C T IQGAP3 Splice_Site p.X1019_splice 0.17 TCGA-EE-A180-06 1 156770350 156770350 T G PRCC 3'UTR 1.00 TCGA-EE-A180-06 1 156823982 156823982 C T INSRR Missense_Mutation p.D67N 0.63 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A180-06 1 156948003 156948003 G A ARHGEF11 Missense_Mutation p.P168L 0.67 tolerated(0.06) possibly_damaging(0.721) TCGA-EE-A180-06 1 159163824 159163824 G A CADM3 Missense_Mutation p.V263I 0.65 tolerated(0.1) possibly_damaging(0.867) TCGA-EE-A180-06 1 161128000 161128000 G T UFC1 Missense_Mutation p.G141V 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 162313646 162313646 C T NOS1AP Missense_Mutation p.R159W 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 16332626 16332626 G A C1orf64 Missense_Mutation p.G99S 0.43 tolerated(0.36) benign(0.138) TCGA-EE-A180-06 1 169582216 169582216 C T SELP Silent p.L242L 0.21 TCGA-EE-A180-06 1 17085024 17085024 G A MST1L RNA 0.13 TCGA-EE-A180-06 1 172357745 172357745 G A DNM3 Missense_Mutation p.R773K 0.22 tolerated_low_confidence(0.35) benign(0.342) TCGA-EE-A180-06 1 175049337 175049337 G A TNN Missense_Mutation p.E275K 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A180-06 1 175375428 175375428 G A TNR Silent p.I141I 0.25 TCGA-EE-A180-06 1 17592171 17592171 G A PADI3 Missense_Mutation p.D122N 0.45 deleterious(0) possibly_damaging(0.449) TCGA-EE-A180-06 1 179057065 179057065 T G TOR3A Missense_Mutation p.I220S 0.60 deleterious(0) probably_damaging(0.952) TCGA-EE-A180-06 1 180166366 180166366 G A QSOX1 3'UTR 0.73 TCGA-EE-A180-06 1 180166380 180166380 C T QSOX1 3'UTR 0.28 TCGA-EE-A180-06 1 184041309 184041310 GG - TSEN15 Frame_Shift_Del p.K124Nfs*8 0.16 TCGA-EE-A180-06 1 185175759 185175759 C T SWT1 Silent p.I612I 0.20 TCGA-EE-A180-06 1 186352158 186352158 C T C1orf27 Missense_Mutation p.S35L 0.86 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A180-06 1 196716410 196716410 G A CFH Silent p.G1221G 0.16 TCGA-EE-A180-06 1 196977706 196977706 G A CFHR5 Missense_Mutation p.D535N 0.14 deleterious(0.01) possibly_damaging(0.563) TCGA-EE-A180-06 1 201046165 201046165 G A CACNA1S Silent p.I570I 0.22 TCGA-EE-A180-06 1 201332553 201332553 G A TNNT2 Intron 0.19 TCGA-EE-A180-06 1 202984110 202984110 C T TMEM183A Missense_Mutation p.S154F 0.17 deleterious(0) probably_damaging(0.971) TCGA-EE-A180-06 1 206634404 206634404 C T SRGAP2 Missense_Mutation p.S866L 0.20 tolerated(0.16) benign(0.005) TCGA-EE-A180-06 1 207790106 207790106 G A CR1 Nonsense_Mutation p.W2283* 0.69 TCGA-EE-A180-06 1 209791975 209791975 C T LAMB3 Missense_Mutation p.E911K 0.17 tolerated(0.11) benign(0.21) TCGA-EE-A180-06 1 214705762 214705762 G A PTPN14 Intron 0.30 TCGA-EE-A180-06 1 220440023 220440023 G A RAB3GAP2 Intron 0.53 TCGA-EE-A180-06 1 222713473 222713473 C T HHIPL2 Silent p.G443G 0.20 TCGA-EE-A180-06 1 222716972 222716972 G A HHIPL2 Missense_Mutation p.S294L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 222721094 222721094 C T HHIPL2 Missense_Mutation p.G98E 0.73 tolerated(0.13) benign(0.305) TCGA-EE-A180-06 1 223177154 223177154 G A DISP1 Silent p.K805K 0.59 TCGA-EE-A180-06 1 223285313 223285313 G A TLR5 Missense_Mutation p.S354L 0.74 tolerated(0.64) benign(0.004) TCGA-EE-A180-06 1 2234765 2234765 C T SKI Silent p.F379F 0.44 TCGA-EE-A180-06 1 223567862 223567862 C G C1orf65 Missense_Mutation p.Q349E 0.11 tolerated(0.66) benign(0.163) TCGA-EE-A180-06 1 228430910 228430910 C G OBSCN Missense_Mutation p.Q1078E 0.90 benign(0.123) TCGA-EE-A180-06 1 236908040 236908040 G A ACTN2 Missense_Mutation p.R457H 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 237895406 237895406 C T RYR2 Nonsense_Mutation p.Q3666* 0.13 TCGA-EE-A180-06 1 238090447 238090447 C T RP11-193H5.1 RNA 0.12 TCGA-EE-A180-06 1 23842934 23842934 G A E2F2 Missense_Mutation p.P313L 0.42 deleterious(0) benign(0.301) TCGA-EE-A180-06 1 28599287 28599287 C T SESN2 Missense_Mutation p.P245S 0.50 tolerated(0.57) benign(0.001) TCGA-EE-A180-06 1 28599288 28599288 C T SESN2 Missense_Mutation p.P245L 0.48 tolerated(0.28) benign(0.052) TCGA-EE-A180-06 1 32096301 32096301 G A PEF1 Silent p.A256A 0.44 TCGA-EE-A180-06 1 33960900 33960900 C T ZSCAN20 Missense_Mutation p.P986S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 1 34238207 34238207 C T CSMD2 Silent p.K563K 0.35 TCGA-EE-A180-06 1 34401385 34401385 C T CSMD2 Missense_Mutation p.D190N 0.41 tolerated(0.23) benign(0.308) TCGA-EE-A180-06 1 34678000 34678000 G A C1orf94 Missense_Mutation p.G572R 0.42 deleterious(0.01) benign(0.203) TCGA-EE-A180-06 1 35223275 35223275 G A GJB5 Missense_Mutation p.R115H 0.48 tolerated(0.25) benign(0.009) TCGA-EE-A180-06 1 35223537 35223537 C T GJB5 Silent p.L202L 0.42 TCGA-EE-A180-06 1 36603473 36603473 A C TRAPPC3 Missense_Mutation p.V116G 0.38 deleterious(0) probably_damaging(0.985) TCGA-EE-A180-06 1 40235554 40235554 G A OXCT2 Silent p.T458T 0.23 TCGA-EE-A180-06 1 42619115 42619115 G A GUCA2B 5'UTR 0.38 TCGA-EE-A180-06 1 47024214 47024214 G A MKNK1 3'UTR 0.45 TCGA-EE-A180-06 1 53927249 53927249 C T DMRTB1 Silent p.A227A 0.42 TCGA-EE-A180-06 1 57185991 57185991 C T C1orf168 Silent p.E662E 0.40 TCGA-EE-A180-06 1 57206413 57206413 C T C1orf168 Missense_Mutation p.D554N 0.38 tolerated(0.14) benign(0.033) TCGA-EE-A180-06 1 57425773 57425773 C T C8B Missense_Mutation p.D57N 0.39 tolerated(0.58) benign(0.005) TCGA-EE-A180-06 1 60312778 60312778 G A HOOK1 Missense_Mutation p.E284K 0.45 deleterious(0) possibly_damaging(0.752) TCGA-EE-A180-06 1 6520166 6520166 G A ESPN Missense_Mutation p.R842Q 0.66 deleterious(0) probably_damaging(0.994) TCGA-EE-A180-06 1 75037015 75037015 C T C1orf173 Missense_Mutation p.G1460E 0.47 tolerated(0.1) benign(0.063) TCGA-EE-A180-06 1 75037720 75037720 C T C1orf173 Missense_Mutation p.G1225E 0.48 tolerated(0.23) benign(0.083) TCGA-EE-A180-06 1 75072531 75072531 C T C1orf173 Missense_Mutation p.E415K 0.41 tolerated(0.12) benign(0.26) TCGA-EE-A180-06 1 77509909 77509909 G A ST6GALNAC5 Silent p.R94R 0.43 TCGA-EE-A180-06 1 77620261 77620261 G A PIGK Missense_Mutation p.R287C 0.57 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 1 85656133 85656133 A T SYDE2 Missense_Mutation p.L350I 0.41 tolerated_low_confidence(0.09) benign(0.033) TCGA-EE-A180-06 1 874684 874684 C T SAMD11 Missense_Mutation p.P184S 0.62 tolerated(0.37) benign(0.006) TCGA-EE-A180-06 1 9009404 9009404 G A CA6 Silent p.R54R 0.42 TCGA-EE-A180-06 20 1592059 1592059 C T SIRPB1 Intron 0.64 TCGA-EE-A180-06 20 16359880 16359880 C T KIF16B Missense_Mutation p.E923K 0.28 tolerated_low_confidence(0.07) benign(0.31) TCGA-EE-A180-06 20 18022303 18022303 C T OVOL2 Missense_Mutation p.R129H 0.51 tolerated(0.08) probably_damaging(0.95) TCGA-EE-A180-06 20 2312850 2312850 G A TGM3 Silent p.T512T 0.62 TCGA-EE-A180-06 20 25187900 25187900 C T ENTPD6 Silent p.A81A 0.53 TCGA-EE-A180-06 20 25201921 25201921 G A ENTPD6 Missense_Mutation p.E333K 0.48 deleterious(0.05) benign(0.098) TCGA-EE-A180-06 20 29896336 29896336 G A DEFB116 Missense_Mutation p.A18V 0.32 tolerated(1) benign(0) TCGA-EE-A180-06 20 31607537 31607537 C T BPIFB2 Missense_Mutation p.S354F 0.19 tolerated(0.12) benign(0.166) TCGA-EE-A180-06 20 34136412 34136412 C T ERGIC3 Silent p.F204F 0.29 TCGA-EE-A180-06 20 34526952 34526952 C T PHF20 Silent p.S878S 0.24 TCGA-EE-A180-06 20 35521517 35521517 C T TLDC2 3'UTR 0.40 TCGA-EE-A180-06 20 3679989 3679989 C T SIGLEC1 Missense_Mutation p.G549E 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 20 3843000 3843000 C T MAVS Missense_Mutation p.P189S 0.34 tolerated(0.11) probably_damaging(0.995) TCGA-EE-A180-06 20 40790031 40790031 C T PTPRT Missense_Mutation p.M881I 0.29 deleterious(0) benign(0.109) TCGA-EE-A180-06 20 44642335 44642335 G A MMP9 Silent p.P550P 0.12 TCGA-EE-A180-06 20 5283043 5283043 C T PROKR2 Silent p.R266R 0.58 TCGA-EE-A180-06 20 57016033 57016033 C T VAPB Missense_Mutation p.S156F 0.41 deleterious(0.01) benign(0.284) TCGA-EE-A180-06 20 62187465 62187465 G A C20orf195 Missense_Mutation p.R150Q 0.31 tolerated(0.59) benign(0.005) TCGA-EE-A180-06 20 62626271 62626271 G A PRPF6 Silent p.R147R 0.54 TCGA-EE-A180-06 20 62631108 62631108 C T PRPF6 Missense_Mutation p.P340L 0.34 deleterious(0) benign(0.008) TCGA-EE-A180-06 20 629487 629487 G A SRXN1 Silent p.S95S 0.31 TCGA-EE-A180-06 21 41465764 41465764 G A DSCAM Missense_Mutation p.S1245F 0.40 tolerated(1) benign(0.002) TCGA-EE-A180-06 22 16287319 16287319 G A POTEH Silent p.V189V 0.21 TCGA-EE-A180-06 22 20128178 20128178 C T ZDHHC8 Silent p.T233T 0.38 TCGA-EE-A180-06 22 20128179 20128179 C T ZDHHC8 Nonsense_Mutation p.R234* 0.38 TCGA-EE-A180-06 22 22516827 22516827 G A IGLV4-60 Missense_Mutation p.V39I 0.29 tolerated(0.1) benign(0.036) TCGA-EE-A180-06 22 24122860 24122860 C T MMP11 Missense_Mutation p.H192Y 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 22 26860230 26860230 G A HPS4 Missense_Mutation p.P456S 0.55 tolerated(0.17) benign(0.093) TCGA-EE-A180-06 22 31019011 31019011 C T TCN2 Missense_Mutation p.A388V 0.32 tolerated(0.27) benign(0) TCGA-EE-A180-06 22 37452391 37452391 C T KCTD17 Silent p.I117I 0.35 TCGA-EE-A180-06 22 37678613 37678613 G A CYTH4 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.02) benign(0.058) TCGA-EE-A180-06 22 39413917 39413917 C T APOBEC3C Silent p.F107F 0.61 TCGA-EE-A180-06 22 40073355 40073355 C T CACNA1I Silent p.L1622L 0.22 TCGA-EE-A180-06 22 42276872 42276872 C T SREBF2 Silent p.L638L 0.34 TCGA-EE-A180-06 22 44892584 44892584 G A LDOC1L 3'UTR 0.58 TCGA-EE-A180-06 22 50217213 50217213 G A BRD1 Silent p.I251I 0.58 TCGA-EE-A180-06 22 51043437 51043437 C T MAPK8IP2 Silent p.L569L 0.55 TCGA-EE-A180-06 2 100623791 100623791 C A AFF3 Missense_Mutation p.Q127H 0.52 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 2 10187786 10187786 C T KLF11 Missense_Mutation p.P108S 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A180-06 2 107040302 107040302 C T RGPD3 Nonsense_Mutation p.W1374* 0.33 TCGA-EE-A180-06 2 108488418 108488418 G A RGPD4 Missense_Mutation p.E1320K 0.37 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A180-06 2 108488568 108488568 G A RGPD4 Missense_Mutation p.D1370N 0.38 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A180-06 2 113819745 113819745 C T IL36RN Silent p.L54L 0.40 TCGA-EE-A180-06 2 128351213 128351213 C T MYO7B Silent p.F746F 0.42 TCGA-EE-A180-06 2 131521956 131521956 G A AMER3 Missense_Mutation p.E771K 0.42 deleterious(0.05) benign(0.013) TCGA-EE-A180-06 2 136570375 136570375 G A LCT Missense_Mutation p.S620F 0.45 deleterious(0) possibly_damaging(0.908) TCGA-EE-A180-06 2 15694243 15694243 G A NBAS Missense_Mutation p.P77S 0.47 deleterious(0.02) possibly_damaging(0.826) TCGA-EE-A180-06 2 158272265 158272265 C T CYTIP Missense_Mutation p.G335E 0.48 tolerated(0.07) probably_damaging(1) TCGA-EE-A180-06 2 162273385 162273385 G A TBR1 Missense_Mutation p.G155E 0.49 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A180-06 2 163216050 163216050 C T GCA Silent p.F205F 0.64 TCGA-EE-A180-06 2 168097225 168097225 C T XIRP2 Missense_Mutation p.H341Y 0.50 possibly_damaging(0.844) TCGA-EE-A180-06 2 172930373 172930373 G A METAP1D Silent p.R130R 0.34 TCGA-EE-A180-06 2 17699610 17699610 C T RAD51AP2 Missense_Mutation p.D25N 0.40 tolerated(0.11) possibly_damaging(0.526) TCGA-EE-A180-06 2 179604798 179604798 G A TTN Missense_Mutation p.P4388S 0.34 TCGA-EE-A180-06 2 182392041 182392041 C T ITGA4 Missense_Mutation p.S786L 0.40 deleterious(0.03) probably_damaging(1) TCGA-EE-A180-06 2 182543039 182543039 C T NEUROD1 Silent p.L183L 0.41 TCGA-EE-A180-06 2 187627450 187627450 C T FAM171B Missense_Mutation p.S794F 0.30 deleterious(0.01) possibly_damaging(0.89) TCGA-EE-A180-06 2 187703837 187703837 G A ZSWIM2 Nonsense_Mutation p.R115* 0.38 TCGA-EE-A180-06 2 190922136 190922136 G A MSTN Silent p.L326L 0.32 TCGA-EE-A180-06 2 191843720 191843720 T G STAT1 Missense_Mutation p.M579L 0.47 tolerated(0.07) benign(0.085) TCGA-EE-A180-06 2 196762408 196762408 C T DNAH7 Missense_Mutation p.D1544N 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A180-06 2 196765044 196765044 C T DNAH7 Missense_Mutation p.A1504T 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 2 207557952 207557952 C T DYTN Silent p.Q309Q 0.42 TCGA-EE-A180-06 2 216809589 216809589 G A MREG Silent p.P214P 0.35 TCGA-EE-A180-06 2 218954061 218954061 G A RUFY4 Missense_Mutation p.R550Q 0.46 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A180-06 2 219694842 219694842 C T PRKAG3 Silent p.Q164Q 0.43 TCGA-EE-A180-06 2 220290683 220290683 G A DES Missense_Mutation p.A462T 0.48 tolerated(0.11) benign(0.004) TCGA-EE-A180-06 2 231113608 231113608 G A SP140 Missense_Mutation p.D301N 0.41 tolerated(0.22) benign(0.247) TCGA-EE-A180-06 2 233527636 233527636 G A EFHD1 Missense_Mutation p.D143N 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 2 234628299 234628299 G A UGT1A4 Missense_Mutation p.G278D 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 2 237240134 237240134 G A IQCA1 Silent p.V747V 0.42 TCGA-EE-A180-06 2 237395476 237395476 C T IQCA1 Missense_Mutation p.G239D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A180-06 2 238726609 238726609 C T RBM44 Silent p.N350N 0.56 TCGA-EE-A180-06 2 27305120 27305120 G C EMILIN1 Silent p.A227A 0.33 TCGA-EE-A180-06 2 31565048 31565048 C T XDH Splice_Site p.X1173_splice 0.47 TCGA-EE-A180-06 2 37362678 37362678 G A EIF2AK2 Missense_Mutation p.P245L 0.48 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A180-06 2 40657369 40657369 G A SLC8A1 Missense_Mutation p.H18Y 0.30 tolerated_low_confidence(0.9) benign(0.001) TCGA-EE-A180-06 2 42557083 42557083 A G EML4 Silent p.Q894Q 0.47 TCGA-EE-A180-06 2 51254887 51254887 C T NRXN1 Silent p.R175R 0.33 TCGA-EE-A180-06 2 51255021 51255021 C T NRXN1 Missense_Mutation p.D131N 0.44 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A180-06 2 61571002 61571002 G A USP34 Silent p.L816L 0.46 TCGA-EE-A180-06 2 65245733 65245733 C T SLC1A4 Silent p.V428V 0.47 TCGA-EE-A180-06 2 69049857 69049857 G A ARHGAP25 Missense_Mutation p.G529E 0.48 tolerated(0.73) benign(0.038) TCGA-EE-A180-06 2 70457969 70457969 G A TIA1 Silent p.P47P 0.42 TCGA-EE-A180-06 2 71192327 71192327 C T ATP6V1B1 3'UTR 0.85 TCGA-EE-A180-06 2 98846550 98846550 G A VWA3B Missense_Mutation p.E730K 0.37 tolerated(0.14) benign(0.206) TCGA-EE-A180-06 3 101484342 101484342 C T CEP97 Nonsense_Mutation p.Q849* 0.22 TCGA-EE-A180-06 3 10183810 10183810 C T VHL Silent p.G93G 0.53 TCGA-EE-A180-06 3 10183811 10183811 G T VHL Nonsense_Mutation p.E94* 0.52 TCGA-EE-A180-06 3 10452365 10452365 C T ATP2B2 Missense_Mutation p.E112K 0.64 tolerated(0.21) probably_damaging(0.994) TCGA-EE-A180-06 3 121383285 121383285 T C GOLGB1 3'UTR 0.92 TCGA-EE-A180-06 3 121980907 121980907 C T CASR Missense_Mutation p.S342F 0.91 tolerated(0.5) probably_damaging(0.927) TCGA-EE-A180-06 3 124837619 124837619 C T SLC12A8 Silent p.A302A 0.50 TCGA-EE-A180-06 3 130735079 130735079 G A ASTE1 Missense_Mutation p.H540Y 0.91 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 3 139346556 139346556 C T NMNAT3 5'UTR 0.43 TCGA-EE-A180-06 3 141011959 141011959 T A ACPL2 Nonsense_Mutation p.L452* 0.66 TCGA-EE-A180-06 3 1418755 1418755 G C CNTN6 Missense_Mutation p.W721S 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 3 1418756 1418756 G A CNTN6 Nonsense_Mutation p.W721* 0.22 TCGA-EE-A180-06 3 150321205 150321205 C T SELT Missense_Mutation p.A19V 0.74 deleterious(0.03) benign(0.055) TCGA-EE-A180-06 3 150321206 150321206 C T SELT Silent p.A19A 0.74 TCGA-EE-A180-06 3 16535300 16535300 G A RFTN1 Missense_Mutation p.P26L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 3 167246922 167246922 G A WDR49 Missense_Mutation p.S423L 0.47 deleterious(0.01) benign(0.124) TCGA-EE-A180-06 3 167508241 167508241 C T SERPINI1 Missense_Mutation p.S111F 0.24 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A180-06 3 183887840 183887840 C T DVL3 Silent p.A515A 0.30 TCGA-EE-A180-06 3 193082039 193082039 G A ATP13A5 Missense_Mutation p.R32W 0.28 deleterious(0) probably_damaging(0.99) TCGA-EE-A180-06 3 24003489 24003489 C T NR1D2 Missense_Mutation p.P180L 0.57 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 3 25611354 25611354 G A RARB Missense_Mutation p.R185Q 0.64 tolerated(0.25) benign(0.048) TCGA-EE-A180-06 3 26751075 26751075 G A LRRC3B 5'UTR 0.31 TCGA-EE-A180-06 3 37081681 37081681 C T MLH1 Silent p.L521L 0.62 TCGA-EE-A180-06 3 38284240 38284240 C T OXSR1 Nonsense_Mutation p.R361* 0.49 TCGA-EE-A180-06 3 38524693 38524693 C T ACVR2B Missense_Mutation p.S470F 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 3 38752339 38752339 C A SCN10A Missense_Mutation p.R1380L 0.39 deleterious(0) possibly_damaging(0.792) TCGA-EE-A180-06 3 38763757 38763757 C T SCN10A Missense_Mutation p.G1167R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 3 38781039 38781039 C T SCN10A Silent p.K749K 0.28 TCGA-EE-A180-06 3 38888345 38888345 A T SCN11A Missense_Mutation p.I1739N 0.57 deleterious(0) possibly_damaging(0.502) TCGA-EE-A180-06 3 403449 403449 C T CHL1 Silent p.F458F 0.59 TCGA-EE-A180-06 3 41267290 41267290 A G CTNNB1 Missense_Mutation p.K292E 0.31 deleterious(0) possibly_damaging(0.646) TCGA-EE-A180-06 3 46482954 46482954 C T LTF Missense_Mutation p.G559E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 3 49043552 49043552 G A P4HTM Missense_Mutation p.G468E 0.54 deleterious(0) possibly_damaging(0.882) TCGA-EE-A180-06 3 49691727 49691727 C T BSN Missense_Mutation p.P1580S 0.26 unknown(0) TCGA-EE-A180-06 3 54537612 54537612 C T CACNA2D3 Missense_Mutation p.H159Y 0.62 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 3 55107575 55107575 G A CACNA2D3 Missense_Mutation p.E1031K 0.56 deleterious(0) probably_damaging(0.991) TCGA-EE-A180-06 3 63645456 63645456 C T SNTN Silent p.F67F 0.24 TCGA-EE-A180-06 3 89390208 89390208 C T EPHA3 Silent p.S319S 0.58 TCGA-EE-A180-06 3 93780378 93780378 G A DHFRL1 5'UTR 0.28 TCGA-EE-A180-06 3 98189338 98189338 G A OR5K1 Missense_Mutation p.M306I 0.29 tolerated(0.07) benign(0) TCGA-EE-A180-06 4 104510830 104510830 G A TACR3 3'UTR 0.47 TCGA-EE-A180-06 4 106640409 106640409 G A GSTCD Missense_Mutation p.G207R 0.39 tolerated(0.56) benign(0.009) TCGA-EE-A180-06 4 110763752 110763752 C T RRH Missense_Mutation p.A283V 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 4 113527198 113527198 G A C4orf21 Missense_Mutation p.P923L 0.34 deleterious(0.01) benign(0.009) TCGA-EE-A180-06 4 119203081 119203081 C T PRSS12 3'UTR 0.35 TCGA-EE-A180-06 4 122831408 122831408 G A TRPC3 Missense_Mutation p.L565F 0.39 tolerated(0.58) benign(0.026) TCGA-EE-A180-06 4 122831409 122831409 G A TRPC3 Silent p.F564F 0.39 TCGA-EE-A180-06 4 140058811 140058811 A G ELF2 Silent p.L15L 0.43 TCGA-EE-A180-06 4 147830272 147830272 G A TTC29 Silent p.S102S 0.37 TCGA-EE-A180-06 4 152212270 152212270 G A PRSS48 Missense_Mutation p.G218S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 4 155555 155555 C T ZNF718 RNA 0.42 TCGA-EE-A180-06 4 187195349 187195349 A T F11 Missense_Mutation p.E135D 0.46 tolerated(0.11) possibly_damaging(0.903) TCGA-EE-A180-06 4 25278737 25278737 T C PI4K2B Silent p.G458G 0.51 TCGA-EE-A180-06 4 38777028 38777028 G A TLR10 Nonsense_Mutation p.Q62* 0.38 TCGA-EE-A180-06 4 40796416 40796416 C T NSUN7 Missense_Mutation p.S402F 0.51 tolerated(1) possibly_damaging(0.652) TCGA-EE-A180-06 4 40818272 40818272 C T APBB2 Missense_Mutation p.R706Q 0.39 deleterious(0) probably_damaging(0.953) TCGA-EE-A180-06 4 46099233 46099233 G A GABRG1 Missense_Mutation p.R80C 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 4 47033990 47033990 G A GABRB1 Missense_Mutation p.G47E 0.44 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A180-06 4 6107636 6107636 C T JAKMIP1 Missense_Mutation p.R63Q 0.49 tolerated(0.12) benign(0.219) TCGA-EE-A180-06 4 6325200 6325200 C T PPP2R2C Silent p.R391R 0.63 TCGA-EE-A180-06 4 6349649 6349649 G A PPP2R2C Silent p.F238F 0.36 TCGA-EE-A180-06 4 6611628 6611628 T C MAN2B2 Missense_Mutation p.Y704H 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A180-06 4 79429998 79429998 C T FRAS1 Silent p.F3206F 0.36 TCGA-EE-A180-06 4 79430112 79430112 C T FRAS1 Silent p.P3244P 0.44 TCGA-EE-A180-06 4 88085181 88085181 G A KLHL8 Nonsense_Mutation p.R530* 0.32 TCGA-EE-A180-06 4 88085182 88085182 G A KLHL8 Silent p.P529P 0.32 TCGA-EE-A180-06 4 96140241 96140241 C T UNC5C Silent p.S508S 0.54 TCGA-EE-A180-06 5 114961317 114961317 T C TMED7-TICAM2 Missense_Mutation p.K58R 0.28 tolerated_low_confidence(0.15) probably_damaging(0.997) TCGA-EE-A180-06 5 131008070 131008070 T C FNIP1 Silent p.V689V 0.30 TCGA-EE-A180-06 5 131305829 131305829 C T ACSL6 Nonsense_Mutation p.W500* 0.58 TCGA-EE-A180-06 5 13864608 13864608 C T DNAH5 Silent p.R1498R 0.59 TCGA-EE-A180-06 5 140181712 140181712 C T PCDHA3 Silent p.F310F 0.38 TCGA-EE-A180-06 5 140187362 140187362 G A PCDHA4 Missense_Mutation p.R197Q 0.52 tolerated_low_confidence(0.13) possibly_damaging(0.532) TCGA-EE-A180-06 5 140215547 140215547 G A PCDHA7 Missense_Mutation p.E527K 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.692) TCGA-EE-A180-06 5 140476681 140476681 G A PCDHB2 Silent p.L769L 0.35 TCGA-EE-A180-06 5 140529841 140529841 G A PCDHB6 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0.171) TCGA-EE-A180-06 5 140558576 140558576 G A PCDHB8 Missense_Mutation p.E321K 0.12 tolerated_low_confidence(0.27) benign(0.007) TCGA-EE-A180-06 5 140558995 140558995 C T PCDHB8 Silent p.F460F 0.11 TCGA-EE-A180-06 5 140720352 140720352 C T PCDHGA2 Missense_Mutation p.S605F 0.45 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-EE-A180-06 5 140751467 140751467 G A PCDHGB3 Silent p.S502S 0.45 TCGA-EE-A180-06 5 141335364 141335364 A C PCDH12 Missense_Mutation p.L685V 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 5 141511870 141511870 C T NDFIP1 Missense_Mutation p.T82I 0.49 deleterious(0.05) possibly_damaging(0.685) TCGA-EE-A180-06 5 145719546 145719546 G A POU4F3 Missense_Mutation p.E186K 0.53 deleterious(0) probably_damaging(0.989) TCGA-EE-A180-06 5 147040619 147040619 C T JAKMIP2 Missense_Mutation p.M173I 0.42 tolerated(0.49) possibly_damaging(0.679) TCGA-EE-A180-06 5 149759245 149759245 G A TCOF1 Missense_Mutation p.E937K 0.47 tolerated(0.19) possibly_damaging(0.881) TCGA-EE-A180-06 5 150404944 150404944 G A GPX3 Missense_Mutation p.G44E 0.44 tolerated(0.47) probably_damaging(1) TCGA-EE-A180-06 5 158140087 158140087 T C EBF1 Silent p.Q420Q 0.39 TCGA-EE-A180-06 5 159344183 159344183 G A ADRA1B Missense_Mutation p.D91N 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A180-06 5 172590856 172590856 C T BNIP1 Missense_Mutation p.L250F 0.26 tolerated(0.11) benign(0.283) TCGA-EE-A180-06 5 173316723 173316723 C T CPEB4 5'UTR 0.29 TCGA-EE-A180-06 5 176314617 176314617 G A HK3 Missense_Mutation p.H479Y 0.52 deleterious(0) possibly_damaging(0.794) TCGA-EE-A180-06 5 179320271 179320271 G A TBC1D9B Silent p.F258F 0.55 TCGA-EE-A180-06 5 21760756 21760756 C T CDH12 Missense_Mutation p.R515Q 0.60 tolerated(0.2) benign(0.005) TCGA-EE-A180-06 5 22142668 22142668 C T CDH12 Intron 0.43 TCGA-EE-A180-06 5 26881659 26881659 G A CDH9 Silent p.V652V 0.54 TCGA-EE-A180-06 5 26915863 26915863 C T CDH9 Missense_Mutation p.R133K 0.33 tolerated(0.23) benign(0.017) TCGA-EE-A180-06 5 40835358 40835358 C T RPL37 5'UTR 0.71 TCGA-EE-A180-06 5 40981622 40981622 G A C7 Missense_Mutation p.G827R 0.51 deleterious(0) probably_damaging(0.975) TCGA-EE-A180-06 5 41033206 41033206 G A MROH2B Silent p.V766V 0.15 TCGA-EE-A180-06 5 428049 428049 C T AHRR Missense_Mutation p.A301V 0.25 tolerated(0.36) benign(0.072) TCGA-EE-A180-06 5 64769497 64769497 C T ADAMTS6 Missense_Mutation p.E2K 0.67 deleterious_low_confidence(0.04) benign(0.445) TCGA-EE-A180-06 5 64769564 64769564 A G ADAMTS6 5'UTR 0.63 TCGA-EE-A180-06 5 68715373 68715373 A G MARVELD2 Missense_Mutation p.Q54R 0.55 deleterious(0.03) probably_damaging(0.91) TCGA-EE-A180-06 5 70307183 70307183 T G NAIP Missense_Mutation p.Q196P 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A180-06 5 71016486 71016486 C T CARTPT 3'UTR 0.50 TCGA-EE-A180-06 5 76171199 76171199 C T S100Z Silent p.L5L 0.74 TCGA-EE-A180-06 5 96073567 96073567 T G CAST Silent p.A197A 0.21 TCGA-EE-A180-06 6 100841572 100841572 G A SIM1 Missense_Mutation p.S454L 0.45 tolerated_low_confidence(0.23) benign(0.025) TCGA-EE-A180-06 6 107391195 107391195 G A BEND3 Silent p.F400F 0.49 TCGA-EE-A180-06 6 108985310 108985310 C T FOXO3 Missense_Mutation p.S425F 0.37 deleterious(0.04) possibly_damaging(0.791) TCGA-EE-A180-06 6 112390552 112390552 G A WISP3 Missense_Mutation p.G283E 0.33 deleterious(0.01) possibly_damaging(0.638) TCGA-EE-A180-06 6 12294300 12294300 G A EDN1 Nonsense_Mutation p.W120* 0.92 TCGA-EE-A180-06 6 128134489 128134489 C T THEMIS Missense_Mutation p.G433S 0.46 tolerated(0.26) possibly_damaging(0.604) TCGA-EE-A180-06 6 128330378 128330378 G A PTPRK Missense_Mutation p.P744S 0.42 tolerated(0.19) probably_damaging(0.994) TCGA-EE-A180-06 6 129636685 129636685 C T LAMA2 Missense_Mutation p.T1207I 0.35 tolerated(0.22) benign(0.362) TCGA-EE-A180-06 6 129636686 129636686 C T LAMA2 Silent p.T1207T 0.34 TCGA-EE-A180-06 6 13365764 13365764 G A GFOD1 Silent p.F128F 0.63 TCGA-EE-A180-06 6 152771804 152771804 C T SYNE1 Silent p.R1117R 0.40 TCGA-EE-A180-06 6 152777179 152777179 C T SYNE1 Missense_Mutation p.E857K 0.51 benign(0.22) TCGA-EE-A180-06 6 155578089 155578089 G A TIAM2 Missense_Mutation p.G1647E 0.35 tolerated_low_confidence(0.13) benign(0.018) TCGA-EE-A180-06 6 165715369 165715369 G A C6orf118 Missense_Mutation p.P148S 0.53 tolerated(0.11) benign(0.14) TCGA-EE-A180-06 6 33290751 33290752 AG - DAXX 5'UTR 0.37 TCGA-EE-A180-06 6 35754898 35754898 G A CLPSL1 Splice_Site p.X74_splice 0.22 TCGA-EE-A180-06 6 35755796 35755796 C T CLPSL1 3'UTR 0.24 TCGA-EE-A180-06 6 41248704 41248704 G A TREM1 Silent p.I198I 0.93 TCGA-EE-A180-06 6 44147820 44147820 C T CAPN11 Silent p.I520I 0.30 TCGA-EE-A180-06 6 47649585 47649585 C T GPR111 Silent p.T430T 0.42 TCGA-EE-A180-06 6 52546633 52546633 T A TMEM14A Silent p.A31A 0.45 TCGA-EE-A180-06 6 55142315 55142315 G A HCRTR2 Silent p.R300R 0.27 TCGA-EE-A180-06 6 55198717 55198717 T G GFRAL Silent p.L97L 0.45 TCGA-EE-A180-06 6 56047331 56047331 G A COL21A1 Missense_Mutation p.S29L 0.30 tolerated(0.12) benign(0.01) TCGA-EE-A180-06 6 56472573 56472573 C T DST Intron 0.41 TCGA-EE-A180-06 6 70071212 70071212 C T BAI3 Silent p.F1349F 0.46 TCGA-EE-A180-06 6 70098620 70098620 C T BAI3 Missense_Mutation p.P1469L 0.45 deleterious(0) probably_damaging(0.97) TCGA-EE-A180-06 6 7884654 7884654 C T TXNDC5 Missense_Mutation p.A372T 0.30 tolerated(0.88) benign(0.009) TCGA-EE-A180-06 6 79577201 79577201 A T IRAK1BP1 5'UTR 0.54 TCGA-EE-A180-06 6 93955113 93955113 C A EPHA7 Nonsense_Mutation p.G929* 0.43 TCGA-EE-A180-06 6 93967181 93967181 C T EPHA7 Missense_Mutation p.R724K 0.49 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A180-06 6 97063601 97063601 G A FHL5 Missense_Mutation p.E270K 0.34 tolerated(0.24) benign(0.243) TCGA-EE-A180-06 6 97587184 97587184 G A KLHL32 3'UTR 0.43 TCGA-EE-A180-06 7 100371397 100371397 C T ZAN Silent p.S1896S 0.23 TCGA-EE-A180-06 7 100817857 100817857 C T NAT16 Missense_Mutation p.D78N 0.23 tolerated(0.15) benign(0.063) TCGA-EE-A180-06 7 100849577 100849577 G T PLOD3 Silent p.S734S 0.28 TCGA-EE-A180-06 7 107692560 107692560 G A LAMB4 Missense_Mutation p.L1300F 0.25 tolerated(0.71) benign(0.128) TCGA-EE-A180-06 7 111386434 111386434 C T DOCK4 Missense_Mutation p.D1536N 0.53 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A180-06 7 116397781 116397781 G A MET Silent p.G685G 0.28 TCGA-EE-A180-06 7 116955301 116955301 C T WNT2 Missense_Mutation p.D138N 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A180-06 7 117232393 117232393 C T CFTR Silent p.I724I 0.60 TCGA-EE-A180-06 7 121682659 121682659 C T PTPRZ1 Intron 0.57 TCGA-EE-A180-06 7 131189120 131189120 C T PODXL Missense_Mutation p.D543N 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 7 137257515 137257515 G A DGKI Missense_Mutation p.P611S 0.58 tolerated(0.06) probably_damaging(0.957) TCGA-EE-A180-06 7 140111659 140111659 C T RAB19 Intron 0.25 TCGA-EE-A180-06 7 141803141 141803141 G A MGAM Missense_Mutation p.E1800K 0.21 tolerated(1) benign(0.015) TCGA-EE-A180-06 7 143771406 143771406 C T OR2A25 Silent p.L32L 0.31 TCGA-EE-A180-06 7 148514433 148514433 G A EZH2 Missense_Mutation p.P431S 0.39 tolerated(0.29) benign(0.131) TCGA-EE-A180-06 7 148767784 148767784 G A ZNF786 Missense_Mutation p.H694Y 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 7 148950957 148950957 C T ZNF212 Silent p.S313S 0.29 TCGA-EE-A180-06 7 150093982 150093982 G A ZNF775 Missense_Mutation p.G138D 0.53 tolerated(0.16) possibly_damaging(0.886) TCGA-EE-A180-06 7 150417940 150417940 G A GIMAP1 Missense_Mutation p.G283E 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A180-06 7 18631225 18631225 A T HDAC9 Nonsense_Mutation p.K168* 0.39 TCGA-EE-A180-06 7 20739455 20739455 G A ABCB5 Missense_Mutation p.G721E 0.56 tolerated(0.44) benign(0.001) TCGA-EE-A180-06 7 27187355 27187355 A G HOXA6 Missense_Mutation p.F5S 0.24 deleterious(0) probably_damaging(0.91) TCGA-EE-A180-06 7 35130058 35130058 C T DPY19L2P1 RNA 0.27 TCGA-EE-A180-06 7 37889885 37889885 G A NME8 Missense_Mutation p.R6Q 0.61 deleterious(0.03) benign(0.36) TCGA-EE-A180-06 7 43532712 43532712 C T HECW1 Missense_Mutation p.R1124C 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 7 43664264 43664264 C T STK17A Silent p.T356T 0.36 TCGA-EE-A180-06 7 45614655 45614655 C T ADCY1 Silent p.F171F 0.28 TCGA-EE-A180-06 7 47408077 47408077 G A TNS3 Silent p.A722A 0.59 TCGA-EE-A180-06 7 47930265 47930265 G A PKD1L1 Silent p.S850S 0.22 TCGA-EE-A180-06 7 4794101 4794101 C T FOXK1 Missense_Mutation p.S253F 0.29 deleterious(0) possibly_damaging(0.888) TCGA-EE-A180-06 7 57187663 57187663 G A ZNF479 Missense_Mutation p.H487Y 0.22 deleterious(0.03) benign(0.009) TCGA-EE-A180-06 7 6449868 6449868 C T DAGLB Silent p.P571P 0.40 TCGA-EE-A180-06 7 6797536 6797536 C T RSPH10B2 Silent p.S76S 0.33 TCGA-EE-A180-06 7 70236594 70236594 C T AUTS2 Silent p.G598G 0.52 TCGA-EE-A180-06 7 70236595 70236595 C T AUTS2 Missense_Mutation p.P599S 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A180-06 7 75070851 75070851 G T POM121C 5'UTR 0.72 TCGA-EE-A180-06 7 83029377 83029377 C T SEMA3E Missense_Mutation p.D445N 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 7 92247472 92247472 G A CDK6 Missense_Mutation p.P250S 0.24 tolerated(0.58) probably_damaging(0.996) TCGA-EE-A180-06 7 99306665 99306665 G A CYP3A7 Missense_Mutation p.P416S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 7 99306666 99306666 G A CYP3A7 Silent p.L415L 0.41 TCGA-EE-A180-06 7 99695821 99695821 G A MCM7 Silent p.V271V 0.32 TCGA-EE-A180-06 7 99746547 99746547 C T LAMTOR4 5'UTR 0.69 TCGA-EE-A180-06 8 103297818 103297818 G A UBR5 Missense_Mutation p.P1803S 0.89 tolerated(0.15) probably_damaging(0.986) TCGA-EE-A180-06 8 109796338 109796338 G A TMEM74 3'UTR 0.89 TCGA-EE-A180-06 8 110457557 110457557 G A PKHD1L1 Missense_Mutation p.G1820D 0.93 deleterious(0) probably_damaging(0.993) TCGA-EE-A180-06 8 131859707 131859707 G A ADCY8 Missense_Mutation p.S822F 0.90 deleterious(0.01) benign(0.089) TCGA-EE-A180-06 8 133141656 133141656 C T KCNQ3 Silent p.S824S 0.84 TCGA-EE-A180-06 8 142227206 142227206 G A SLC45A4 Missense_Mutation p.T520I 0.89 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A180-06 8 16021667 16021667 C T MSR1 Missense_Mutation p.G242R 0.32 tolerated(0.68) benign(0.018) TCGA-EE-A180-06 8 1808276 1808276 C T ARHGEF10 Missense_Mutation p.P136L 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A180-06 8 18729139 18729139 T C PSD3 Missense_Mutation p.E412G 0.61 tolerated_low_confidence(0.05) benign(0.002) TCGA-EE-A180-06 8 24298541 24298541 C T ADAM7 5'UTR 0.29 TCGA-EE-A180-06 8 25365254 25365254 A T CDCA2 Nonstop_Mutation p.*1024Yext*42 0.30 TCGA-EE-A180-06 8 39606961 39606961 A G ADAM2 Silent p.N628N 0.29 TCGA-EE-A180-06 8 52387651 52387651 C T PXDNL Missense_Mutation p.G192E 0.88 tolerated(0.19) benign(0.066) TCGA-EE-A180-06 8 52567257 52567257 C T PXDNL Silent p.L76L 0.97 TCGA-EE-A180-06 8 8234497 8234497 G A SGK223 Silent p.V474V 0.61 TCGA-EE-A180-06 8 8749117 8749117 A C MFHAS1 Nonsense_Mutation p.Y484* 0.26 TCGA-EE-A180-06 8 92972505 92972505 C T RUNX1T1 Missense_Mutation p.G605R 0.83 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A180-06 9 101804367 101804367 T A COL15A1 Missense_Mutation p.F851Y 0.44 tolerated(0.28) probably_damaging(0.973) TCGA-EE-A180-06 9 107360962 107360962 G A OR13C5 Silent p.L245L 0.47 TCGA-EE-A180-06 9 114476807 114476807 C T C9orf84 Missense_Mutation p.G714E 0.37 tolerated(0.93) benign(0.004) TCGA-EE-A180-06 9 115931888 115931888 G A FKBP15 Missense_Mutation p.S1034F 0.40 deleterious_low_confidence(0) benign(0.316) TCGA-EE-A180-06 9 116083796 116083796 G A WDR31 Silent p.T211T 0.38 TCGA-EE-A180-06 9 116083797 116083797 G A WDR31 Missense_Mutation p.T211I 0.37 deleterious(0.03) benign(0.027) TCGA-EE-A180-06 9 122075522 122075522 A T BRINP1 Missense_Mutation p.F38I 0.43 deleterious_low_confidence(0.02) benign(0.038) TCGA-EE-A180-06 9 127572526 127572526 C T OLFML2A Silent p.V598V 0.48 TCGA-EE-A180-06 9 127765843 127765843 A G SCAI Missense_Mutation p.F313L 0.53 deleterious(0) possibly_damaging(0.888) TCGA-EE-A180-06 9 130197476 130197476 C T ZNF79 Silent p.S71S 0.37 TCGA-EE-A180-06 9 130670704 130670704 G A ST6GALNAC4 Silent p.I292I 0.37 TCGA-EE-A180-06 9 135984192 135984192 G A RALGDS Missense_Mutation p.P216S 0.40 deleterious(0.01) probably_damaging(1) TCGA-EE-A180-06 9 139396750 139396750 G A NOTCH1 Silent p.P1786P 0.34 TCGA-EE-A180-06 9 139650959 139650959 G A LCN8 Intron 0.46 TCGA-EE-A180-06 9 140007854 140007854 C T DPP7 Missense_Mutation p.G194S 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A180-06 9 140450052 140450052 G A DPH7 Missense_Mutation p.S333L 0.45 deleterious(0) probably_damaging(0.979) TCGA-EE-A180-06 9 140953581 140953581 C T CACNA1B Silent p.I1508I 0.43 TCGA-EE-A180-06 9 17395016 17395016 A G CNTLN Missense_Mutation p.N855S 0.37 tolerated(0.24) benign(0.094) TCGA-EE-A180-06 9 18675859 18675859 G A ADAMTSL1 Missense_Mutation p.G364R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 9 27158109 27158109 C T TEK Silent p.I111I 0.40 TCGA-EE-A180-06 9 35846258 35846258 C T TMEM8B Missense_Mutation p.S126F 0.54 tolerated(1) benign(0.172) TCGA-EE-A180-06 9 35906748 35906748 G A HRCT1 3'UTR 0.67 TCGA-EE-A180-06 9 40702698 40702698 G A SPATA31A3 Missense_Mutation p.G119S 0.33 tolerated(0.68) probably_damaging(0.972) TCGA-EE-A180-06 9 70177149 70177149 C A FOXD4L5 Missense_Mutation p.A279S 0.23 tolerated(0.12) benign(0.067) TCGA-EE-A180-06 9 74828890 74828890 G A GDA Silent p.S187S 0.59 TCGA-EE-A180-06 9 77354349 77354349 C T TRPM6 Missense_Mutation p.R1835K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 9 96860134 96860134 G A PTPDC1 Missense_Mutation p.R427K 0.43 tolerated(0.12) benign(0.16) TCGA-EE-A180-06 9 97081905 97081905 G A NUTM2F Missense_Mutation p.T492I 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A180-06 9 99581854 99581854 T A ZNF782 Missense_Mutation p.M151L 0.44 tolerated(1) benign(0) TCGA-EE-A180-06 X 103349572 103349572 C A SLC25A53 Missense_Mutation p.M123I 0.91 tolerated(0.3) benign(0.173) TCGA-EE-A180-06 X 106482179 106482179 C T PIH1D3 Missense_Mutation p.P153S 0.80 tolerated(0.43) benign(0.05) TCGA-EE-A180-06 X 109560938 109560938 G A AMMECR1 Missense_Mutation p.S121F 1.00 tolerated(0.3) benign(0.065) TCGA-EE-A180-06 X 110654046 110654046 C T DCX Missense_Mutation p.E53K 0.91 deleterious_low_confidence(0) unknown(0) TCGA-EE-A180-06 X 131762534 131762534 C T HS6ST2 Missense_Mutation p.R552Q 0.96 tolerated_low_confidence(0.14) benign(0.006) TCGA-EE-A180-06 X 142716833 142716833 G A SLITRK4 Missense_Mutation p.H698Y 0.94 tolerated(0.07) probably_damaging(0.968) TCGA-EE-A180-06 X 151869600 151869600 C T MAGEA6 Missense_Mutation p.T97I 0.93 deleterious(0.02) benign(0.297) TCGA-EE-A180-06 X 151869780 151869780 C T MAGEA6 Missense_Mutation p.S157F 0.93 tolerated(0.3) benign(0.011) TCGA-EE-A180-06 X 153416285 153416285 G A OPN1LW Nonsense_Mutation p.W90* 0.91 TCGA-EE-A180-06 X 15827342 15827342 G A ZRSR2 Nonsense_Mutation p.W153* 0.91 TCGA-EE-A180-06 X 19984422 19984422 A G CXorf23 Silent p.S129S 0.91 TCGA-EE-A180-06 X 23945391 23945391 G A CXorf58 Silent p.R153R 0.92 TCGA-EE-A180-06 X 27998033 27998033 G A DCAF8L1 Silent p.I473I 0.95 TCGA-EE-A180-06 X 30254981 30254981 G A MAGEB3 Missense_Mutation p.E314K 0.97 deleterious(0) possibly_damaging(0.831) TCGA-EE-A180-06 X 3240236 3240236 G A MXRA5 Missense_Mutation p.H1164Y 0.87 deleterious(0.01) benign(0.335) TCGA-EE-A180-06 X 35989768 35989768 C T CXorf22 Missense_Mutation p.P679L 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A180-06 X 73071618 73071618 G A XIST RNA 0.91 TCGA-EE-A181-06 10 101829480 101829480 C T CPN1 Nonsense_Mutation p.W189* 0.21 TCGA-EE-A181-06 10 102505934 102505934 C T PAX2 5'UTR 0.33 TCGA-EE-A181-06 10 102824124 102824124 G A KAZALD1 Silent p.R206R 0.24 TCGA-EE-A181-06 10 103281544 103281544 C T BTRC Missense_Mutation p.S158F 0.21 deleterious(0) possibly_damaging(0.492) TCGA-EE-A181-06 10 103292172 103292172 C T BTRC Nonsense_Mutation p.R321* 0.27 TCGA-EE-A181-06 10 104497551 104497551 C T SFXN2 3'UTR 0.32 TCGA-EE-A181-06 10 104629864 104629864 G T AS3MT Missense_Mutation p.K22N 0.36 tolerated(0.05) benign(0.04) TCGA-EE-A181-06 10 104828438 104828438 C T CNNM2 Missense_Mutation p.A709V 0.20 deleterious(0.01) benign(0.187) TCGA-EE-A181-06 10 106737116 106737116 G A SORCS3 Silent p.E273E 0.19 TCGA-EE-A181-06 10 106916913 106916913 G A SORCS3 Silent p.G500G 0.26 TCGA-EE-A181-06 10 106961007 106961007 G A SORCS3 Missense_Mutation p.E753K 0.21 tolerated(0.22) probably_damaging(0.95) TCGA-EE-A181-06 10 112745523 112745523 G T SHOC2 Nonsense_Mutation p.G281* 0.09 TCGA-EE-A181-06 10 115533988 115533988 G A PLEKHS1 Silent p.L219L 0.26 TCGA-EE-A181-06 10 116038530 116038530 G A VWA2 Silent p.R251R 0.24 TCGA-EE-A181-06 10 116232792 116232792 C G ABLIM1 Missense_Mutation p.E407Q 0.22 tolerated(0.08) possibly_damaging(0.701) TCGA-EE-A181-06 10 116919912 116919912 G A ATRNL1 Missense_Mutation p.G314E 0.24 tolerated(0.52) benign(0.012) TCGA-EE-A181-06 10 12077174 12077174 C T UPF2 Silent p.E83E 0.16 TCGA-EE-A181-06 10 120934047 120934047 G A PRDX3 Missense_Mutation p.A76V 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A181-06 10 121432051 121432051 C T BAG3 Silent p.S264S 0.22 TCGA-EE-A181-06 10 122263349 122263349 C T PPAPDC1A Missense_Mutation p.P26S 0.15 deleterious(0.05) possibly_damaging(0.882) TCGA-EE-A181-06 10 123310941 123310941 C T FGFR2 Missense_Mutation p.E163K 0.31 deleterious(0.05) benign(0.024) TCGA-EE-A181-06 10 123843116 123843116 G A TACC2 Silent p.L367L 0.27 TCGA-EE-A181-06 10 123971130 123971130 C T TACC2 Missense_Mutation p.S2397F 0.29 probably_damaging(0.999) TCGA-EE-A181-06 10 123985898 123985898 G A TACC2 Silent p.P2542P 0.24 TCGA-EE-A181-06 10 124001492 124001492 G A TACC2 Missense_Mutation p.E2790K 0.26 probably_damaging(0.999) TCGA-EE-A181-06 10 124351962 124351962 G A DMBT1 Missense_Mutation p.G784E 0.54 tolerated(0.09) unknown(0) TCGA-EE-A181-06 10 124358388 124358388 G A DMBT1 Missense_Mutation p.D1019N 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A181-06 10 124457997 124457997 C T C10orf120 Missense_Mutation p.G87D 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 10 124458929 124458929 C T C10orf120 Splice_Site p.X59_splice 0.19 TCGA-EE-A181-06 10 124595826 124595826 T C CUZD1 Missense_Mutation p.I286M 0.17 deleterious(0) possibly_damaging(0.879) TCGA-EE-A181-06 10 125539742 125539742 C T CPXM2 Missense_Mutation p.E307K 0.25 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A181-06 10 127787064 127787064 A G ADAM12 Missense_Mutation p.V309A 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A181-06 10 129224186 129224186 G A DOCK1 Missense_Mutation p.E1588K 0.38 deleterious(0.02) possibly_damaging(0.458) TCGA-EE-A181-06 10 129902337 129902337 G A MKI67 Silent p.P2589P 0.40 TCGA-EE-A181-06 10 13264196 13264196 C T UCMA Silent p.Q108Q 0.31 TCGA-EE-A181-06 10 132891375 132891375 C T TCERG1L 3'UTR 0.21 TCGA-EE-A181-06 10 135038169 135038169 C T KNDC1 Silent p.I1675I 0.37 TCGA-EE-A181-06 10 13838548 13838548 C T FRMD4A Missense_Mutation p.E83K 0.14 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A181-06 10 14968864 14968864 G A DCLRE1C Missense_Mutation p.S317F 0.27 deleterious(0.02) possibly_damaging(0.529) TCGA-EE-A181-06 10 15325991 15325991 C T FAM171A1 Missense_Mutation p.D71N 0.30 deleterious(0) benign(0.061) TCGA-EE-A181-06 10 15648354 15648354 G A ITGA8 Missense_Mutation p.S611F 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A181-06 10 17152951 17152951 G A CUBN Missense_Mutation p.P328S 0.32 tolerated(0.4) benign(0.186) TCGA-EE-A181-06 10 17156160 17156160 C T CUBN Missense_Mutation p.G250E 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 10 17278314 17278314 C T VIM Missense_Mutation p.P432L 0.23 tolerated(0.07) benign(0.055) TCGA-EE-A181-06 10 17949596 17949596 G A MRC1L1 Nonsense_Mutation p.W1320* 0.33 TCGA-EE-A181-06 10 18250704 18250704 G A SLC39A12 Silent p.Q152Q 0.23 TCGA-EE-A181-06 10 18789875 18789875 C T CACNB2 Silent p.S197S 0.23 TCGA-EE-A181-06 10 21129735 21129735 C T NEBL Missense_Mutation p.G424E 0.15 deleterious(0.05) probably_damaging(1) TCGA-EE-A181-06 10 21414760 21414760 A G C10orf113 Missense_Mutation p.F154L 0.10 tolerated_low_confidence(0.09) benign(0.294) TCGA-EE-A181-06 10 21435296 21435296 C T C10orf113 Missense_Mutation p.E48K 0.17 tolerated_low_confidence(0.83) benign(0.001) TCGA-EE-A181-06 10 24896788 24896788 G A ARHGAP21 Missense_Mutation p.P823S 0.17 deleterious(0.04) possibly_damaging(0.652) TCGA-EE-A181-06 10 25886792 25886792 C T GPR158 Missense_Mutation p.S746L 0.15 deleterious(0) possibly_damaging(0.481) TCGA-EE-A181-06 10 25886961 25886961 C T GPR158 Silent p.S802S 0.42 TCGA-EE-A181-06 10 26508016 26508016 C T GAD2 Silent p.L111L 0.11 TCGA-EE-A181-06 10 28101452 28101452 T C ARMC4 Missense_Mutation p.R1042G 0.15 deleterious(0.01) benign(0.347) TCGA-EE-A181-06 10 28273185 28273185 C T ARMC4 Missense_Mutation p.D204N 0.27 deleterious(0) benign(0.341) TCGA-EE-A181-06 10 29812863 29812863 G A SVIL Missense_Mutation p.L894F 0.20 deleterious(0) possibly_damaging(0.729) TCGA-EE-A181-06 10 30315406 30315406 G A KIAA1462 Missense_Mutation p.P1224L 0.35 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A181-06 10 30317902 30317902 C T KIAA1462 Missense_Mutation p.G392E 0.25 tolerated(0.25) possibly_damaging(0.548) TCGA-EE-A181-06 10 31749965 31749965 G A ZEB1 Splice_Site p.X20_splice 0.13 TCGA-EE-A181-06 10 31791356 31791356 G A ZEB1 Missense_Mutation p.D135N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 10 31791374 31791374 C T ZEB1 Missense_Mutation p.P141S 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A181-06 10 31810846 31810846 C T ZEB1 Silent p.I862I 0.26 TCGA-EE-A181-06 10 32197512 32197512 G A ARHGAP12 Missense_Mutation p.S91F 0.14 tolerated(0.12) benign(0.372) TCGA-EE-A181-06 10 32580220 32580220 G T EPC1 Silent p.I282I 0.14 TCGA-EE-A181-06 10 33496571 33496571 C T NRP1 Missense_Mutation p.R563K 0.22 deleterious(0.01) possibly_damaging(0.659) TCGA-EE-A181-06 10 34648195 34648195 G A PARD3 Silent p.S649S 0.27 TCGA-EE-A181-06 10 35333706 35333706 G A CUL2 Silent p.P218P 0.15 TCGA-EE-A181-06 10 35333707 35333707 G A CUL2 Missense_Mutation p.P218L 0.15 tolerated(0.08) benign(0.016) TCGA-EE-A181-06 10 37430756 37430756 G A ANKRD30A Missense_Mutation p.E255K 0.17 tolerated(0.14) possibly_damaging(0.636) TCGA-EE-A181-06 10 38126611 38126611 A C ZNF248 Missense_Mutation p.F58V 0.27 tolerated(0.15) benign(0.087) TCGA-EE-A181-06 10 38344756 38344756 C T ZNF33A Silent p.L568L 0.21 TCGA-EE-A181-06 10 45480374 45480374 C T RASSF4 Missense_Mutation p.R163W 0.16 deleterious(0) probably_damaging(0.971) TCGA-EE-A181-06 10 45799011 45799011 C T OR13A1 Missense_Mutation p.G287E 0.22 tolerated(1) benign(0.002) TCGA-EE-A181-06 10 45938633 45938633 G A ALOX5 Missense_Mutation p.D474N 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A181-06 10 47086898 47086898 G A NPY4R Missense_Mutation p.D39N 0.10 tolerated(0.53) benign(0.009) TCGA-EE-A181-06 10 47087414 47087414 C T NPY4R Missense_Mutation p.R211C 0.10 deleterious(0) probably_damaging(0.971) TCGA-EE-A181-06 10 47087590 47087590 G A NPY4R Silent p.V269V 0.13 TCGA-EE-A181-06 10 48426745 48426745 T C GDF10 Missense_Mutation p.N421S 0.13 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 10 49482596 49482596 C T FRMPD2 Silent p.T5T 0.18 TCGA-EE-A181-06 10 50122160 50122160 G A LRRC18 Missense_Mutation p.T14I 0.30 deleterious(0) probably_damaging(0.934) TCGA-EE-A181-06 10 50122161 50122161 T A LRRC18 Missense_Mutation p.T14S 0.29 tolerated(0.1) possibly_damaging(0.524) TCGA-EE-A181-06 10 5043870 5043870 G A AKR1C2 Missense_Mutation p.P30S 0.21 tolerated(0.06) possibly_damaging(0.724) TCGA-EE-A181-06 10 50531819 50531819 C T C10orf71 Missense_Mutation p.P410L 0.23 tolerated(0.07) benign(0.006) TCGA-EE-A181-06 10 50827771 50827771 G A CHAT Missense_Mutation p.G130R 0.27 tolerated(0.07) benign(0.293) TCGA-EE-A181-06 10 50827772 50827772 G A CHAT Missense_Mutation p.G130E 0.24 tolerated(0.29) benign(0.009) TCGA-EE-A181-06 10 50964886 50964886 C T OGDHL Missense_Mutation p.R104Q 0.20 tolerated(0.59) benign(0) TCGA-EE-A181-06 10 52103686 52103686 C T SGMS1 Missense_Mutation p.M63I 0.29 tolerated(0.22) benign(0.004) TCGA-EE-A181-06 10 52603813 52603813 C T A1CF Missense_Mutation p.E65K 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 10 55849813 55849813 C T PCDH15 Missense_Mutation p.R643Q 0.18 tolerated(0.14) probably_damaging(0.98) TCGA-EE-A181-06 10 55944945 55944945 G A PCDH15 Silent p.L463L 0.19 TCGA-EE-A181-06 10 5963508 5963508 C T FBXO18 Silent p.F817F 0.19 TCGA-EE-A181-06 10 5995107 5995107 C T IL15RA Missense_Mutation p.G252E 0.26 tolerated(0.3) benign(0.007) TCGA-EE-A181-06 10 60549031 60549031 C T BICC1 Missense_Mutation p.P204S 0.20 deleterious(0) benign(0.062) TCGA-EE-A181-06 10 61011317 61011317 C T FAM13C Intron 0.16 TCGA-EE-A181-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.27 TCGA-EE-A181-06 10 61994473 61994473 T A ANK3 Silent p.R290R 0.21 TCGA-EE-A181-06 10 64136687 64136687 G A ZNF365 Silent p.R245R 0.21 TCGA-EE-A181-06 10 68280388 68280388 G A CTNNA3 Silent p.F506F 0.32 TCGA-EE-A181-06 10 70332628 70332628 C T TET1 Missense_Mutation p.P178L 0.20 tolerated(0.32) benign(0) TCGA-EE-A181-06 10 72324250 72324250 G A PALD1 Missense_Mutation p.R798K 0.33 tolerated(0.12) benign(0.133) TCGA-EE-A181-06 10 72538277 72538277 C T TBATA Intron 0.24 TCGA-EE-A181-06 10 75258467 75258467 C T USP54 Missense_Mutation p.E1659K 0.27 deleterious_low_confidence(0.05) benign(0.006) TCGA-EE-A181-06 10 75865061 75865061 C T VCL Missense_Mutation p.S795F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 10 76603188 76603188 C T KAT6B Silent p.F191F 0.26 TCGA-EE-A181-06 10 7679266 7679266 C T ITIH5 Missense_Mutation p.E193K 0.31 deleterious(0) possibly_damaging(0.864) TCGA-EE-A181-06 10 7682777 7682777 C T ITIH5 Missense_Mutation p.R114K 0.36 tolerated(1) benign(0.008) TCGA-EE-A181-06 10 76861672 76861672 C T DUSP13 Intron 0.20 TCGA-EE-A181-06 10 7750997 7750997 C T ITIH2 Nonsense_Mutation p.Q69* 0.17 TCGA-EE-A181-06 10 7763649 7763649 G A ITIH2 Missense_Mutation p.R259K 0.16 deleterious(0.04) benign(0.02) TCGA-EE-A181-06 10 7774395 7774395 G A ITIH2 Missense_Mutation p.R581K 0.11 tolerated(0.5) benign(0.002) TCGA-EE-A181-06 10 7844269 7844269 T G ATP5C1 Missense_Mutation p.V225G 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 10 79576350 79576350 G A DLG5 Silent p.I1328I 0.31 TCGA-EE-A181-06 10 79737189 79737189 G A POLR3A 3'UTR 0.26 TCGA-EE-A181-06 10 79778949 79778949 G A POLR3A Silent p.F420F 0.34 TCGA-EE-A181-06 10 79781441 79781441 C T POLR3A Splice_Site p.X350_splice 0.23 TCGA-EE-A181-06 10 8007196 8007196 C T TAF3 Missense_Mutation p.P575S 0.39 deleterious_low_confidence(0.05) probably_damaging(0.968) TCGA-EE-A181-06 10 82098873 82098873 C G DYDC1 Missense_Mutation p.E127Q 0.19 tolerated(0.08) possibly_damaging(0.791) TCGA-EE-A181-06 10 85984273 85984273 G A LRIT2 Silent p.S236S 0.12 TCGA-EE-A181-06 10 86007459 86007459 G A RGR Silent p.G64G 0.38 TCGA-EE-A181-06 10 88703301 88703301 C T MMRN2 Missense_Mutation p.E414K 0.37 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A181-06 10 90774052 90774052 C T FAS Missense_Mutation p.H285Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 10 92509192 92509192 G A HTR7 Silent p.I233I 0.23 TCGA-EE-A181-06 10 92509303 92509303 C T HTR7 Silent p.G196G 0.28 TCGA-EE-A181-06 10 93083 93083 C T TUBB8 Missense_Mutation p.D417N 0.50 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A181-06 10 93390174 93390174 T A PPP1R3C Missense_Mutation p.N155I 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 10 95116512 95116512 G A MYOF Missense_Mutation p.R1072C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 10 95191178 95191178 C T MYOF Missense_Mutation p.G111E 0.13 tolerated(0.13) possibly_damaging(0.654) TCGA-EE-A181-06 10 95372538 95372538 T G PDE6C Missense_Mutation p.F19C 0.38 deleterious(0) probably_damaging(0.968) TCGA-EE-A181-06 10 95552643 95552643 C T LGI1 Missense_Mutation p.S216L 0.41 tolerated(0.6) benign(0.001) TCGA-EE-A181-06 10 95791609 95791609 C T PLCE1 Missense_Mutation p.S269F 0.29 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-EE-A181-06 10 96006212 96006212 G A PLCE1 Missense_Mutation p.G977E 0.26 deleterious(0) probably_damaging(0.97) TCGA-EE-A181-06 10 96534882 96534882 G A CYP2C19 Missense_Mutation p.G79E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 10 96602762 96602762 G A CYP2C19 Missense_Mutation p.R377K 0.24 deleterious(0.03) benign(0.159) TCGA-EE-A181-06 10 96748604 96748604 G A CYP2C9 Missense_Mutation p.G431E 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 10 96971721 96971721 G A C10orf129 Missense_Mutation p.G281E 0.28 tolerated(1) probably_damaging(0.999) TCGA-EE-A181-06 10 97423793 97423793 G A TCTN3 3'UTR 0.31 TCGA-EE-A181-06 10 97919819 97919819 G A ZNF518A RNA 0.18 TCGA-EE-A181-06 10 98092307 98092307 C T DNTT Missense_Mutation p.P438L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 10 98362082 98362082 G A PIK3AP1 Missense_Mutation p.S772F 0.45 tolerated(0.36) benign(0.311) TCGA-EE-A181-06 10 98388183 98388183 C T PIK3AP1 Silent p.K481K 0.29 TCGA-EE-A181-06 10 98742644 98742644 C T C10orf12 Silent p.F499F 0.39 TCGA-EE-A181-06 10 98819289 98819289 C G SLIT1 Splice_Site p.X338_splice 0.45 TCGA-EE-A181-06 10 99338082 99338082 G A ANKRD2 Missense_Mutation p.R119Q 0.27 deleterious(0.04) probably_damaging(0.93) TCGA-EE-A181-06 10 99338083 99338083 G A ANKRD2 Silent p.R119R 0.27 TCGA-EE-A181-06 11 100211308 100211308 C T CNTN5 Silent p.F948F 0.30 TCGA-EE-A181-06 11 10064411 10064411 C T SBF2 Missense_Mutation p.E87K 0.13 deleterious(0) probably_damaging(0.96) TCGA-EE-A181-06 11 101834449 101834449 A C KIAA1377 Missense_Mutation p.T895P 0.21 tolerated(0.05) benign(0.077) TCGA-EE-A181-06 11 101946667 101946667 C T C11orf70 Silent p.L167L 0.12 TCGA-EE-A181-06 11 102661124 102661124 C T MMP1 3'UTR 0.33 TCGA-EE-A181-06 11 102711167 102711167 G A MMP3 Silent p.S261S 0.29 TCGA-EE-A181-06 11 102712940 102712940 C T MMP3 Silent p.G190G 0.20 TCGA-EE-A181-06 11 102822831 102822831 C T MMP13 Missense_Mutation p.G237R 0.14 tolerated(0.09) probably_damaging(1) TCGA-EE-A181-06 11 103908115 103908115 G A DDI1 Missense_Mutation p.E189K 0.26 tolerated(0.13) benign(0.027) TCGA-EE-A181-06 11 103908641 103908641 G A DDI1 Missense_Mutation p.G364E 0.14 deleterious(0.02) benign(0.039) TCGA-EE-A181-06 11 104971442 104971442 G C CARD17 Silent p.G24G 0.15 TCGA-EE-A181-06 11 105775927 105775927 G A GRIA4 Missense_Mutation p.R353Q 0.17 tolerated(0.51) benign(0.044) TCGA-EE-A181-06 11 105789468 105789468 C T GRIA4 Missense_Mutation p.H434Y 0.53 tolerated(0.9) benign(0.006) TCGA-EE-A181-06 11 105850360 105850360 G A GRIA4 Missense_Mutation p.G868E 0.16 deleterious(0.03) possibly_damaging(0.45) TCGA-EE-A181-06 11 105929663 105929663 G A KBTBD3 Silent p.F54F 0.16 TCGA-EE-A181-06 11 106579310 106579310 T A GUCY1A2 Missense_Mutation p.N671I 0.23 deleterious(0) probably_damaging(0.991) TCGA-EE-A181-06 11 107263597 107263597 G A CWF19L2 Missense_Mutation p.L548F 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 11 107299650 107299650 C G CWF19L2 Silent p.S436S 0.19 TCGA-EE-A181-06 11 108332209 108332209 G A C11orf65 Silent p.F26F 0.18 TCGA-EE-A181-06 11 108381478 108381478 C T EXPH5 Missense_Mutation p.E1586K 0.15 tolerated(1) benign(0.002) TCGA-EE-A181-06 11 110457015 110457015 G A ARHGAP20 Missense_Mutation p.S447L 0.22 tolerated(0.11) benign(0.231) TCGA-EE-A181-06 11 112014513 112014513 C T IL18 Missense_Mutation p.D130N 0.21 tolerated(0.1) benign(0.067) TCGA-EE-A181-06 11 113210175 113210175 C T TTC12 Silent p.L269L 0.26 TCGA-EE-A181-06 11 113935071 113935071 C T ZBTB16 Missense_Mutation p.S350F 0.36 tolerated(0.39) benign(0.1) TCGA-EE-A181-06 11 114568889 114568889 G A NXPE2 Silent p.K85K 0.17 TCGA-EE-A181-06 11 115109315 115109315 G A CADM1 Missense_Mutation p.S110L 0.19 deleterious(0) probably_damaging(0.942) TCGA-EE-A181-06 11 116633974 116633974 C T BUD13 Missense_Mutation p.E111K 0.17 tolerated(0.11) benign(0.091) TCGA-EE-A181-06 11 116729253 116729253 G A SIK3 Silent p.F870F 0.19 TCGA-EE-A181-06 11 117059475 117059475 C T SIDT2 Missense_Mutation p.S404F 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 11 117307868 117307868 C T DSCAML1 Missense_Mutation p.A1624T 0.26 tolerated(0.4) benign(0.005) TCGA-EE-A181-06 11 117329626 117329626 C T DSCAML1 Splice_Site p.X1198_splice 0.15 TCGA-EE-A181-06 11 117352703 117352703 C T DSCAML1 Missense_Mutation p.G905D 0.11 tolerated(0.07) possibly_damaging(0.899) TCGA-EE-A181-06 11 117374729 117374729 C T DSCAML1 Silent p.G790G 0.20 TCGA-EE-A181-06 11 117391858 117391858 G A DSCAML1 Silent p.I460I 0.19 TCGA-EE-A181-06 11 118037620 118037620 C T SCN2B Silent p.P210P 0.12 TCGA-EE-A181-06 11 118037638 118037638 C T SCN2B Silent p.T204T 0.16 TCGA-EE-A181-06 11 118209929 118209929 C T CD3D Missense_Mutation p.R155Q 0.17 deleterious(0.03) possibly_damaging(0.627) TCGA-EE-A181-06 11 118353184 118353184 C T KMT2A Missense_Mutation p.P1354S 0.53 probably_damaging(0.998) TCGA-EE-A181-06 11 118764769 118764769 C T CXCR5 Silent p.T172T 0.23 TCGA-EE-A181-06 11 118923361 118923361 G A HYOU1 Silent p.D325D 0.13 TCGA-EE-A181-06 11 119142544 119142544 T C CBL Silent p.I181I 0.21 TCGA-EE-A181-06 11 119185254 119185254 G A MCAM Silent p.P168P 0.20 TCGA-EE-A181-06 11 119243660 119243660 C T USP2 Silent p.K177K 0.25 TCGA-EE-A181-06 11 121032793 121032793 C T TECTA Silent p.A1662A 0.45 TCGA-EE-A181-06 11 121384861 121384861 G A SORL1 Missense_Mutation p.E348K 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 11 1214023 1214023 G A MUC5AC RNA 0.25 TCGA-EE-A181-06 11 121491895 121491895 C T SORL1 Silent p.I2004I 0.52 TCGA-EE-A181-06 11 122665459 122665459 G A UBASH3B Missense_Mutation p.D344N 0.18 tolerated(0.15) benign(0.118) TCGA-EE-A181-06 11 122928507 122928507 G A HSPA8 Missense_Mutation p.P626S 0.23 tolerated_low_confidence(0.26) possibly_damaging(0.641) TCGA-EE-A181-06 11 122968638 122968638 C T CLMP Silent p.L17L 0.23 TCGA-EE-A181-06 11 123508998 123508998 G A SCN3B Silent p.I160I 0.19 TCGA-EE-A181-06 11 123753896 123753896 C T TMEM225 Silent p.V209V 0.74 TCGA-EE-A181-06 11 123810615 123810615 C T OR4D5 Silent p.L98L 0.19 TCGA-EE-A181-06 11 123901121 123901121 G A OR10G8 Silent p.R264R 0.15 TCGA-EE-A181-06 11 124007356 124007356 C T VWA5A Missense_Mutation p.P534S 0.16 tolerated(1) benign(0) TCGA-EE-A181-06 11 124252431 124252431 C T OR8B2 Missense_Mutation p.G270E 0.18 tolerated_low_confidence(0.08) benign(0.132) TCGA-EE-A181-06 11 124310360 124310360 C T OR8B8 Missense_Mutation p.G208S 0.14 tolerated_low_confidence(0.2) probably_damaging(0.911) TCGA-EE-A181-06 11 124440066 124440066 A C OR8A1 Missense_Mutation p.L34F 0.16 deleterious(0.01) benign(0.242) TCGA-EE-A181-06 11 124793776 124793776 G A HEPACAM Silent p.P186P 0.44 TCGA-EE-A181-06 11 124857228 124857228 T C CCDC15 Missense_Mutation p.V369A 0.17 tolerated(1) benign(0.006) TCGA-EE-A181-06 11 1251278 1251278 C T MUC5B Missense_Mutation p.P422S 0.16 unknown(0) TCGA-EE-A181-06 11 1265536 1265536 G A MUC5B Missense_Mutation p.V2476M 0.43 unknown(0) TCGA-EE-A181-06 11 1269647 1269647 C T MUC5B Missense_Mutation p.A3846V 0.13 unknown(0) TCGA-EE-A181-06 11 1270362 1270362 G A MUC5B Silent p.T4084T 0.26 TCGA-EE-A181-06 11 128709697 128709697 C T KCNJ1 Missense_Mutation p.G167R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 11 128839676 128839676 T A ARHGAP32 Missense_Mutation p.D1797V 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 11 128851345 128851345 G A ARHGAP32 Silent p.S568S 0.23 TCGA-EE-A181-06 11 129725636 129725636 C T TMEM45B Missense_Mutation p.P140L 0.09 tolerated(0.1) benign(0.049) TCGA-EE-A181-06 11 129794919 129794919 G A PRDM10 Missense_Mutation p.S583L 0.22 tolerated(0.11) benign(0.013) TCGA-EE-A181-06 11 129814867 129814867 C T PRDM10 Silent p.P187P 0.39 TCGA-EE-A181-06 11 133801384 133801384 G C IGSF9B Silent p.A444A 0.19 TCGA-EE-A181-06 11 134018711 134018711 G A JAM3 Missense_Mutation p.E299K 0.27 tolerated(0.09) benign(0.14) TCGA-EE-A181-06 11 134118200 134118200 A G THYN1 3'UTR 0.14 TCGA-EE-A181-06 11 134217228 134217228 C T GLB1L2 Silent p.L153L 0.16 TCGA-EE-A181-06 11 15222432 15222432 C T INSC Silent p.P299P 0.27 TCGA-EE-A181-06 11 1629400 1629400 G A KRTAP5-3 Silent p.G72G 0.30 TCGA-EE-A181-06 11 17135970 17135970 G A PIK3C2A Nonsense_Mutation p.Q1087* 0.39 TCGA-EE-A181-06 11 17408360 17408360 G A KCNJ11 3'UTR 0.32 TCGA-EE-A181-06 11 17409117 17409117 G A KCNJ11 Silent p.A174A 0.22 TCGA-EE-A181-06 11 17414435 17414435 G A ABCC8 3'UTR 0.27 TCGA-EE-A181-06 11 17464409 17464409 C T ABCC8 Silent p.L496L 0.28 TCGA-EE-A181-06 11 17483345 17483345 C T ABCC8 Missense_Mutation p.E203K 0.19 tolerated(0.79) benign(0.003) TCGA-EE-A181-06 11 17483349 17483349 C G ABCC8 Silent p.P201P 0.15 TCGA-EE-A181-06 11 17809777 17809777 T A SERGEF Missense_Mutation p.D411V 0.16 deleterious_low_confidence(0.01) benign(0.1) TCGA-EE-A181-06 11 18478166 18478166 C T LDHAL6A 5'UTR 0.29 TCGA-EE-A181-06 11 18636786 18636786 C A SPTY2D1 Silent p.L345L 0.21 TCGA-EE-A181-06 11 18637278 18637278 A T SPTY2D1 Missense_Mutation p.F181L 0.22 deleterious(0.01) benign(0.002) TCGA-EE-A181-06 11 18738425 18738425 C T IGSF22 Missense_Mutation p.E366K 0.18 tolerated(0.05) possibly_damaging(0.699) TCGA-EE-A181-06 11 18955932 18955932 G C MRGPRX1 Missense_Mutation p.R134G 0.30 deleterious(0) possibly_damaging(0.877) TCGA-EE-A181-06 11 19076865 19076865 C T MRGPRX2 3'UTR 0.35 TCGA-EE-A181-06 11 19077810 19077810 C T MRGPRX2 Missense_Mutation p.G47E 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A181-06 11 19247302 19247302 C T E2F8 Missense_Mutation p.R668K 0.37 tolerated(1) benign(0.002) TCGA-EE-A181-06 11 19251093 19251093 C T E2F8 Missense_Mutation p.E601K 0.24 tolerated(0.37) benign(0.027) TCGA-EE-A181-06 11 19256297 19256297 G A E2F8 Missense_Mutation p.R254W 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 11 20486071 20486071 C T PRMT3 Silent p.I442I 0.21 TCGA-EE-A181-06 11 20529934 20529934 C T PRMT3 Missense_Mutation p.S524L 0.17 benign(0.001) TCGA-EE-A181-06 11 2423940 2423940 C T TSSC4 Missense_Mutation p.S26F 0.23 deleterious(0) probably_damaging(0.912) TCGA-EE-A181-06 11 2423941 2423941 C T TSSC4 Silent p.S26S 0.24 TCGA-EE-A181-06 11 244428 244428 C T PSMD13 Missense_Mutation p.P92S 0.18 tolerated(0.28) benign(0.086) TCGA-EE-A181-06 11 26646015 26646015 G A ANO3 Missense_Mutation p.E615K 0.14 deleterious(0.05) probably_damaging(0.95) TCGA-EE-A181-06 11 27393943 27393943 G A LGR4 Missense_Mutation p.S461F 0.17 deleterious(0.02) possibly_damaging(0.714) TCGA-EE-A181-06 11 27720984 27720984 C T BDNF Intron 0.26 TCGA-EE-A181-06 11 28112980 28112980 G A KIF18A Silent p.V188V 0.14 TCGA-EE-A181-06 11 2906618 2906618 G A CDKN1C Silent p.F34F 0.16 TCGA-EE-A181-06 11 30034230 30034230 G A KCNA4 5'UTR 0.16 TCGA-EE-A181-06 11 30946866 30946866 C T DCDC1 Missense_Mutation p.R996K 0.18 tolerated(0.07) benign(0.14) TCGA-EE-A181-06 11 33047353 33047353 C T DEPDC7 Silent p.V74V 0.17 TCGA-EE-A181-06 11 33090374 33090374 C T TCP11L1 Silent p.A432A 0.47 TCGA-EE-A181-06 11 33564636 33564636 G T KIAA1549L Missense_Mutation p.Q212H 0.20 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A181-06 11 3380778 3380778 G A ZNF195 Missense_Mutation p.T487I 0.51 tolerated(1) probably_damaging(0.965) TCGA-EE-A181-06 11 3380779 3380779 T C ZNF195 Missense_Mutation p.T487A 0.48 deleterious(0) possibly_damaging(0.648) TCGA-EE-A181-06 11 3381464 3381464 G A ZNF195 Silent p.F258F 0.19 TCGA-EE-A181-06 11 36615272 36615272 C T RAG2 Silent p.G149G 0.18 TCGA-EE-A181-06 11 3681037 3681037 G A ART1 Nonsense_Mutation p.W96* 0.24 TCGA-EE-A181-06 11 3704564 3704564 G A NUP98 Missense_Mutation p.P1595L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 11 43421508 43421508 G A TTC17 Missense_Mutation p.E377K 0.18 deleterious(0.02) benign(0.075) TCGA-EE-A181-06 11 44927961 44927961 G A TSPAN18 5'UTR 0.20 TCGA-EE-A181-06 11 4510188 4510188 C T OR52K1 Missense_Mutation p.P20S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 11 45671213 45671213 C T CHST1 3'UTR 0.24 TCGA-EE-A181-06 11 4567141 4567141 C T OR52M1 Silent p.L241L 0.23 TCGA-EE-A181-06 11 4626489 4626489 G A TRIM68 Silent p.V82V 0.16 TCGA-EE-A181-06 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.32 TCGA-EE-A181-06 11 4661402 4661402 C T OR51D1 Silent p.L128L 0.14 TCGA-EE-A181-06 11 46726799 46726799 C T ZNF408 Missense_Mutation p.L517F 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A181-06 11 46750952 46750952 G A F2 Missense_Mutation p.G499R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 11 46898047 46898047 G A LRP4 Missense_Mutation p.P1169L 0.19 deleterious(0) possibly_damaging(0.843) TCGA-EE-A181-06 11 46898048 46898048 G A LRP4 Missense_Mutation p.P1169S 0.18 deleterious(0) benign(0.208) TCGA-EE-A181-06 11 47267155 47267155 G A ACP2 Intron 0.13 TCGA-EE-A181-06 11 4825358 4825358 A G OR52R1 Silent p.L85L 0.15 TCGA-EE-A181-06 11 48266725 48266725 C T OR4X2 Silent p.L24L 0.17 TCGA-EE-A181-06 11 48285545 48285545 G A OR4X1 Missense_Mutation p.V45M 0.32 tolerated(0.05) possibly_damaging(0.646) TCGA-EE-A181-06 11 48510431 48510431 C T OR4A47 Silent p.F29F 0.24 TCGA-EE-A181-06 11 4869932 4869932 G A OR51S1 Silent p.F169F 0.44 TCGA-EE-A181-06 11 4903171 4903171 C T OR51T1 Silent p.F41F 0.24 TCGA-EE-A181-06 11 49208293 49208293 C T FOLH1 Missense_Mutation p.R181Q 0.22 deleterious(0.01) benign(0.178) TCGA-EE-A181-06 11 4928635 4928635 C T OR51A7 Silent p.F12F 0.22 TCGA-EE-A181-06 11 4929223 4929223 G A OR51A7 Silent p.L208L 0.21 TCGA-EE-A181-06 11 4968000 4968000 C T OR51A4 Missense_Mutation p.V111I 0.08 tolerated(0.42) benign(0.062) TCGA-EE-A181-06 11 49831775 49831775 T A RP11-707M1.1 RNA 0.12 TCGA-EE-A181-06 11 49974424 49974424 C T OR4C13 Silent p.G150G 0.16 TCGA-EE-A181-06 11 5068032 5068032 G A OR52J3 Missense_Mutation p.E93K 0.39 tolerated(0.07) benign(0.081) TCGA-EE-A181-06 11 5068516 5068516 T A OR52J3 Missense_Mutation p.I254N 0.20 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A181-06 11 5247954 5247954 C T HBB Missense_Mutation p.M56I 0.21 tolerated(0.2) benign(0.104) TCGA-EE-A181-06 11 5255355 5255355 C T HBD Missense_Mutation p.V61M 0.21 deleterious(0) possibly_damaging(0.908) TCGA-EE-A181-06 11 5322817 5322817 G A OR51B4 Silent p.F120F 0.28 TCGA-EE-A181-06 11 5345387 5345387 G A OR51B2 Silent p.I47I 0.19 TCGA-EE-A181-06 11 5373593 5373593 A G OR51B6 Missense_Mutation p.N286D 0.31 deleterious(0.01) possibly_damaging(0.532) TCGA-EE-A181-06 11 5443436 5443436 C T OR51Q1 Silent p.S2S 0.15 TCGA-EE-A181-06 11 55322893 55322893 T C OR4C15 Nonstop_Mutation p.*371Qext*? 0.20 TCGA-EE-A181-06 11 55340154 55340154 A T OR4C16 Missense_Mutation p.K184I 0.22 deleterious(0) possibly_damaging(0.908) TCGA-EE-A181-06 11 5536697 5536697 C T UBQLNL Silent p.Q325Q 0.39 TCGA-EE-A181-06 11 55418412 55418412 T C OR4S2 Silent p.I11I 0.21 TCGA-EE-A181-06 11 55541386 55541386 C T OR5D13 Missense_Mutation p.S158F 0.16 deleterious(0.01) benign(0.337) TCGA-EE-A181-06 11 55587330 55587330 C T OR5D18 Silent p.S75S 0.18 TCGA-EE-A181-06 11 55653632 55653632 G A TRIM51 Missense_Mutation p.E149K 0.50 tolerated(0.24) benign(0.009) TCGA-EE-A181-06 11 55873148 55873148 C T OR8H2 Silent p.S210S 0.13 TCGA-EE-A181-06 11 55999650 55999650 C T OR5T2 Missense_Mutation p.D338N 0.22 tolerated(0.09) benign(0.002) TCGA-EE-A181-06 11 55999843 55999843 C T OR5T2 Silent p.R273R 0.38 TCGA-EE-A181-06 11 5602595 5602595 C T OR52B6 Silent p.I163I 0.32 TCGA-EE-A181-06 11 56143323 56143323 C T OR8U1 Missense_Mutation p.S75F 0.26 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A181-06 11 56143526 56143526 C T OR8U1 Nonsense_Mutation p.Q143* 0.25 TCGA-EE-A181-06 11 56510580 56510580 G A OR9G4 Silent p.I236I 0.12 TCGA-EE-A181-06 11 56757090 56757090 G A OR5AK2 Silent p.R234R 0.24 TCGA-EE-A181-06 11 56757188 56757188 C T OR5AK2 Missense_Mutation p.S267F 0.17 deleterious(0.01) benign(0.119) TCGA-EE-A181-06 11 56757201 56757201 G A OR5AK2 Missense_Mutation p.M271I 0.12 deleterious(0.03) possibly_damaging(0.718) TCGA-EE-A181-06 11 56949697 56949697 C T LRRC55 Silent p.T110T 0.27 TCGA-EE-A181-06 11 57100164 57100164 G A SSRP1 Missense_Mutation p.P235S 0.21 deleterious(0.03) possibly_damaging(0.461) TCGA-EE-A181-06 11 57185259 57185259 C - SLC43A3 Frame_Shift_Del p.H212Tfs*77 0.10 TCGA-EE-A181-06 11 57563996 57563996 T G CTNND1 Missense_Mutation p.L163W 0.29 deleterious(0) probably_damaging(0.928) TCGA-EE-A181-06 11 5757749 5757749 G A OR56B1 Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.28) benign(0.019) TCGA-EE-A181-06 11 57581797 57581797 C T CTNND1 Missense_Mutation p.R885W 0.23 deleterious(0) probably_damaging(0.928) TCGA-EE-A181-06 11 5758189 5758189 C T OR56B1 Missense_Mutation p.S148F 0.17 tolerated(0.06) benign(0.014) TCGA-EE-A181-06 11 57798742 57798742 C T OR6Q1 Silent p.F106F 0.18 TCGA-EE-A181-06 11 57971349 57971349 C T OR1S2 Missense_Mutation p.S102N 0.20 tolerated(0.2) benign(0.023) TCGA-EE-A181-06 11 57983146 57983146 G A OR1S1 Missense_Mutation p.M310I 0.17 tolerated(0.18) benign(0.008) TCGA-EE-A181-06 11 58170716 58170716 G A OR5B3 Missense_Mutation p.P56L 0.21 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-EE-A181-06 11 58322362 58322362 A C LPXN Silent p.A95A 0.13 TCGA-EE-A181-06 11 5841884 5841884 C T OR52N2 Missense_Mutation p.H107Y 0.49 tolerated(0.05) probably_damaging(0.911) TCGA-EE-A181-06 11 58892634 58892634 G A FAM111B Missense_Mutation p.R355Q 0.18 tolerated(0.09) benign(0.138) TCGA-EE-A181-06 11 58919785 58919785 C T FAM111A Missense_Mutation p.A215V 0.27 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A181-06 11 59189564 59189564 G A OR5A2 Missense_Mutation p.P288L 0.27 deleterious(0) probably_damaging(0.95) TCGA-EE-A181-06 11 59210928 59210928 C T OR5A1 Missense_Mutation p.S96L 0.17 deleterious(0.01) possibly_damaging(0.721) TCGA-EE-A181-06 11 59811097 59811097 C T OOSP2 Missense_Mutation p.R74C 0.28 tolerated(0.17) benign(0.017) TCGA-EE-A181-06 11 59814475 59814475 C T OOSP2 Missense_Mutation p.P136S 0.22 deleterious(0.05) probably_damaging(0.948) TCGA-EE-A181-06 11 59814515 59814515 G A OOSP2 Missense_Mutation p.G149E 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A181-06 11 6007457 6007457 G A OR52L1 Missense_Mutation p.S235F 0.17 deleterious(0) benign(0.133) TCGA-EE-A181-06 11 6008119 6008119 C T OR52L1 Silent p.L14L 0.20 TCGA-EE-A181-06 11 60107351 60107351 C T MS4A6E Silent p.L123L 0.18 TCGA-EE-A181-06 11 60274616 60274616 C T MS4A12 3'UTR 0.18 TCGA-EE-A181-06 11 60470892 60470892 C T MS4A8 Silent p.G87G 0.34 TCGA-EE-A181-06 11 60482806 60482806 C T MS4A8 Silent p.I224I 0.15 TCGA-EE-A181-06 11 60642654 60642654 C T ZP1 Silent p.I569I 0.24 TCGA-EE-A181-06 11 60701052 60701052 G A TMEM132A Silent p.K466K 0.49 TCGA-EE-A181-06 11 60703676 60703676 C T TMEM132A Missense_Mutation p.T791I 0.20 tolerated(0.12) benign(0.075) TCGA-EE-A181-06 11 60704703 60704703 C T SLC15A3 Silent p.R578R 0.25 TCGA-EE-A181-06 11 607121 607121 C T PHRF1 Silent p.F554F 0.27 TCGA-EE-A181-06 11 61017144 61017144 C T PGA5 Silent p.I259I 0.17 TCGA-EE-A181-06 11 61093105 61093105 G A DDB1 Missense_Mutation p.A247V 0.22 tolerated(0.1) benign(0.021) TCGA-EE-A181-06 11 61188022 61188022 G A CPSF7 Silent p.I142I 0.26 TCGA-EE-A181-06 11 61541529 61541529 C T MYRF Silent p.F402F 0.25 TCGA-EE-A181-06 11 61563639 61563639 C T FEN1 Missense_Mutation p.P269L 0.15 tolerated(0.1) benign(0.018) TCGA-EE-A181-06 11 61672342 61672342 G A RAB3IL1 Silent p.L224L 0.21 TCGA-EE-A181-06 11 6191233 6191233 C T OR52B2 Missense_Mutation p.M108I 0.18 tolerated(0.08) benign(0.001) TCGA-EE-A181-06 11 62285642 62285642 G A AHNAK Missense_Mutation p.P5416L 0.20 benign(0.111) TCGA-EE-A181-06 11 62656234 62656234 C T SLC3A2 3'UTR 0.47 TCGA-EE-A181-06 11 62748520 62748520 G A SLC22A6 Missense_Mutation p.S325L 0.24 deleterious(0) possibly_damaging(0.732) TCGA-EE-A181-06 11 62749455 62749455 C T SLC22A6 Missense_Mutation p.R219Q 0.53 deleterious(0.02) possibly_damaging(0.744) TCGA-EE-A181-06 11 62752120 62752120 G A SLC22A6 Missense_Mutation p.R15C 0.25 deleterious(0) probably_damaging(0.973) TCGA-EE-A181-06 11 63065041 63065041 G A SLC22A10 Nonsense_Mutation p.W224* 0.10 TCGA-EE-A181-06 11 63277347 63277347 C T LGALS12 Missense_Mutation p.A180V 0.14 tolerated(0.08) benign(0.044) TCGA-EE-A181-06 11 639793 639793 C T DRD4 Missense_Mutation p.P182S 0.21 deleterious(0.01) unknown(0) TCGA-EE-A181-06 11 64109113 64109113 C T CCDC88B Missense_Mutation p.P192S 0.18 tolerated(0.41) probably_damaging(0.914) TCGA-EE-A181-06 11 64326684 64326684 C T SLC22A11 Silent p.S157S 0.13 TCGA-EE-A181-06 11 64329576 64329576 C T SLC22A11 Missense_Mutation p.R200W 0.21 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 11 64368231 64368231 G A SLC22A12 Silent p.Q473Q 0.31 TCGA-EE-A181-06 11 64535187 64535187 G A SF1 Missense_Mutation p.P525S 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-EE-A181-06 11 64573220 64573220 C T MEN1 Missense_Mutation p.E363K 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 11 64665342 64665342 A G ATG2A Missense_Mutation p.S1655P 0.21 deleterious(0.05) benign(0) TCGA-EE-A181-06 11 65272561 65272561 C T MALAT1 RNA 0.17 TCGA-EE-A181-06 11 65729299 65729299 G A SART1 Silent p.T16T 0.32 TCGA-EE-A181-06 11 65826746 65826746 C T SF3B2 Silent p.P419P 0.23 TCGA-EE-A181-06 11 65828151 65828151 C T SF3B2 Silent p.F576F 0.21 TCGA-EE-A181-06 11 66131787 66131788 AG - SLC29A2 Frame_Shift_Del p.F390Pfs*17 0.32 TCGA-EE-A181-06 11 66307075 66307075 G A ZDHHC24 Silent p.P260P 0.32 TCGA-EE-A181-06 11 66456164 66456164 G A SPTBN2 Missense_Mutation p.A2064V 0.25 tolerated(0.05) benign(0.078) TCGA-EE-A181-06 11 66473164 66473164 G A SPTBN2 Missense_Mutation p.P600S 0.21 tolerated(0.76) benign(0.068) TCGA-EE-A181-06 11 67075683 67075683 C T SSH3 Silent p.L308L 0.24 TCGA-EE-A181-06 11 67205905 67205905 C A CORO1B Missense_Mutation p.G471V 0.15 deleterious(0.03) benign(0.309) TCGA-EE-A181-06 11 67205906 67205906 C T CORO1B Missense_Mutation p.G471S 0.15 tolerated(0.11) benign(0.063) TCGA-EE-A181-06 11 67207678 67207678 G A CORO1B Silent p.F306F 0.26 TCGA-EE-A181-06 11 67223049 67223049 G A CABP4 Missense_Mutation p.R52Q 0.32 tolerated(0.59) benign(0.005) TCGA-EE-A181-06 11 67269420 67269420 G A PITPNM1 Missense_Mutation p.P185S 0.19 tolerated(0.12) benign(0.01) TCGA-EE-A181-06 11 67270061 67270061 G A PITPNM1 Silent p.I69I 0.16 TCGA-EE-A181-06 11 68029160 68029160 G A C11orf24 Nonsense_Mutation p.Q435* 0.19 TCGA-EE-A181-06 11 6806802 6806802 C T OR2AG1 Silent p.L178L 0.32 TCGA-EE-A181-06 11 6815912 6815912 G A OR6A2 3'UTR 0.38 TCGA-EE-A181-06 11 68478377 68478377 C G MTL5 Silent p.T433T 0.16 TCGA-EE-A181-06 11 6867534 6867534 G A OR10A5 Silent p.V207V 0.15 TCGA-EE-A181-06 11 6867535 6867535 G A OR10A5 Missense_Mutation p.V208I 0.13 tolerated(0.92) benign(0.029) TCGA-EE-A181-06 11 6898089 6898089 G A OR10A4 Missense_Mutation p.E71K 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 11 70194463 70194463 C T PPFIA1 Silent p.S700S 0.15 TCGA-EE-A181-06 11 70208401 70208401 T C PPFIA1 Missense_Mutation p.V891A 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A181-06 11 70333413 70333413 G A SHANK2 Silent p.I996I 0.22 TCGA-EE-A181-06 11 7063651 7063651 G A NLRP14 Missense_Mutation p.E132K 0.22 deleterious(0.04) possibly_damaging(0.788) TCGA-EE-A181-06 11 7070920 7070920 C T NLRP14 Silent p.F714F 0.11 TCGA-EE-A181-06 11 7110384 7110384 C T RBMXL2 Silent p.F11F 0.35 TCGA-EE-A181-06 11 71693837 71693837 C T RNF121 Missense_Mutation p.P92S 0.18 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 11 71714487 71714487 G A NUMA1 3'UTR 0.33 TCGA-EE-A181-06 11 72145596 72145596 G A CLPB 5'UTR 0.25 TCGA-EE-A181-06 11 72945942 72945942 C T P2RY2 Silent p.T246T 0.15 TCGA-EE-A181-06 11 74323981 74323981 C T POLD3 Silent p.A106A 0.44 TCGA-EE-A181-06 11 75298370 75298370 C T MAP6 Missense_Mutation p.D726N 0.17 deleterious_low_confidence(0) benign(0.011) TCGA-EE-A181-06 11 76255614 76255614 C T C11orf30 Silent p.L1007L 0.20 TCGA-EE-A181-06 11 76255615 76255615 C T C11orf30 Nonsense_Mutation p.Q1008* 0.21 TCGA-EE-A181-06 11 7818247 7818247 G A OR5P2 Silent p.F81F 0.25 TCGA-EE-A181-06 11 78380703 78380703 C T TENM4 Silent p.G2229G 0.40 TCGA-EE-A181-06 11 78437243 78437243 G A TENM4 Missense_Mutation p.S1144F 0.16 deleterious(0) possibly_damaging(0.459) TCGA-EE-A181-06 11 78440676 78440676 C T TENM4 Missense_Mutation p.E1051K 0.26 deleterious(0.01) benign(0.101) TCGA-EE-A181-06 11 7981217 7981217 C T NLRP10 Missense_Mutation p.E648K 0.23 tolerated(0.23) benign(0.011) TCGA-EE-A181-06 11 8148267 8148267 G A RIC3 Silent p.F203F 0.27 TCGA-EE-A181-06 11 84028138 84028138 C T DLG2 Intron 0.18 TCGA-EE-A181-06 11 85420375 85420375 G A SYTL2 Missense_Mutation p.P1005S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A181-06 11 85436478 85436478 G A SYTL2 Missense_Mutation p.P341L 0.17 tolerated(0.08) benign(0.006) TCGA-EE-A181-06 11 86662310 86662310 C A FZD4 Missense_Mutation p.W496C 0.23 deleterious(0.03) possibly_damaging(0.737) TCGA-EE-A181-06 11 88780834 88780834 C T GRM5 Silent p.V69V 0.32 TCGA-EE-A181-06 11 8959625 8959625 G A ASCL3 Silent p.S28S 0.37 TCGA-EE-A181-06 11 89891372 89891372 C T NAALAD2 Missense_Mutation p.P286S 0.17 deleterious(0) probably_damaging(0.987) TCGA-EE-A181-06 11 89909193 89909193 G A NAALAD2 Missense_Mutation p.G519E 0.21 deleterious(0.01) possibly_damaging(0.832) TCGA-EE-A181-06 11 9080872 9080872 T G SCUBE2 Missense_Mutation p.L356F 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 11 9202335 9202335 T C DENND5A Silent p.R478R 0.17 TCGA-EE-A181-06 11 92085467 92085467 C G FAT3 Missense_Mutation p.N63K 0.19 benign(0.006) TCGA-EE-A181-06 11 92086197 92086197 G A FAT3 Missense_Mutation p.D307N 0.17 probably_damaging(0.999) TCGA-EE-A181-06 11 92543147 92543147 C T FAT3 Missense_Mutation p.P3129L 0.14 probably_damaging(0.999) TCGA-EE-A181-06 11 92570934 92570934 C T FAT3 Missense_Mutation p.P3444S 0.22 probably_damaging(0.961) TCGA-EE-A181-06 11 92600363 92600363 C T FAT3 Silent p.L4039L 0.50 TCGA-EE-A181-06 11 92613902 92613902 C T FAT3 Nonsense_Mutation p.Q4045* 0.20 TCGA-EE-A181-06 11 93127654 93127654 G A CCDC67 Silent p.E357E 0.18 TCGA-EE-A181-06 11 93148263 93148263 G A CCDC67 Missense_Mutation p.D541N 0.19 tolerated(0.33) benign(0.011) TCGA-EE-A181-06 11 93170896 93170896 T G CCDC67 3'UTR 0.17 TCGA-EE-A181-06 11 93796841 93796841 G A HEPHL1 Missense_Mutation p.D195N 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 11 93800744 93800744 G A HEPHL1 Missense_Mutation p.M297I 0.15 tolerated(0.11) benign(0.268) TCGA-EE-A181-06 11 94533298 94533298 C T AMOTL1 Silent p.P314P 0.28 TCGA-EE-A181-06 11 9546840 9546840 G A ZNF143 Missense_Mutation p.M580I 0.26 deleterious(0.04) benign(0.001) TCGA-EE-A181-06 11 988673 988673 C T AP2A2 Missense_Mutation p.S418F 0.17 deleterious(0) possibly_damaging(0.895) TCGA-EE-A181-06 11 988674 988674 C T AP2A2 Silent p.S418S 0.16 TCGA-EE-A181-06 12 100660750 100660750 G A DEPDC4 Silent p.N35N 0.28 TCGA-EE-A181-06 12 101477456 101477456 G A ANO4 Missense_Mutation p.E431K 0.13 deleterious(0) possibly_damaging(0.874) TCGA-EE-A181-06 12 101477564 101477564 C T ANO4 Missense_Mutation p.L467F 0.18 tolerated(0.51) possibly_damaging(0.881) TCGA-EE-A181-06 12 101480470 101480470 C T ANO4 Silent p.I488I 0.20 TCGA-EE-A181-06 12 101505353 101505353 G A ANO4 Missense_Mutation p.G737E 0.23 tolerated(1) probably_damaging(1) TCGA-EE-A181-06 12 101581281 101581281 G A SLC5A8 Silent p.I282I 0.33 TCGA-EE-A181-06 12 102056135 102056135 G A MYBPC1 Splice_Site p.X653_splice 0.23 TCGA-EE-A181-06 12 102589758 102589758 A T PARPBP Missense_Mutation p.T477S 0.10 tolerated(0.26) benign(0.009) TCGA-EE-A181-06 12 102811671 102811671 G A IGF1 Silent p.I171I 0.24 TCGA-EE-A181-06 12 10313409 10313409 C T OLR1 Silent p.L180L 0.19 TCGA-EE-A181-06 12 104033936 104033936 C T STAB2 Silent p.F314F 0.38 TCGA-EE-A181-06 12 104056728 104056728 C T STAB2 Silent p.V658V 0.18 TCGA-EE-A181-06 12 104089598 104089598 C T STAB2 Silent p.I1186I 0.12 TCGA-EE-A181-06 12 104100610 104100610 A C STAB2 Missense_Mutation p.Q1346P 0.24 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A181-06 12 104126805 104126805 A C STAB2 Missense_Mutation p.I1769L 0.24 tolerated(0.12) possibly_damaging(0.883) TCGA-EE-A181-06 12 104171643 104171643 G A NT5DC3 Silent p.F537F 0.39 TCGA-EE-A181-06 12 105151427 105151427 C T CHST11 Missense_Mutation p.P302L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 106890587 106890587 C T POLR3B Missense_Mutation p.H959Y 0.17 tolerated(0.08) benign(0.091) TCGA-EE-A181-06 12 107155102 107155102 C T RFX4 Missense_Mutation p.P697L 0.23 deleterious_low_confidence(0) benign(0.155) TCGA-EE-A181-06 12 107245347 107245347 C T RIC8B Silent p.F427F 0.29 TCGA-EE-A181-06 12 10772720 10772720 G A STYK1 3'UTR 0.18 TCGA-EE-A181-06 12 10783869 10783869 C T STYK1 Missense_Mutation p.E76K 0.14 tolerated(0.18) benign(0.008) TCGA-EE-A181-06 12 10786678 10786678 A C STYK1 Missense_Mutation p.L33W 0.20 deleterious(0) possibly_damaging(0.907) TCGA-EE-A181-06 12 108686311 108686311 G A CMKLR1 Silent p.L143L 0.23 TCGA-EE-A181-06 12 109181810 109181810 G A SSH1 Missense_Mutation p.P1035L 0.12 deleterious_low_confidence(0.03) benign(0.05) TCGA-EE-A181-06 12 109945401 109945401 C T UBE3B Silent p.L495L 0.16 TCGA-EE-A181-06 12 110226501 110226501 G A TRPV4 Missense_Mutation p.P638S 0.13 tolerated(0.19) benign(0.14) TCGA-EE-A181-06 12 110495058 110495058 G A C12orf76 Missense_Mutation p.P79S 0.27 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A181-06 12 110495059 110495059 G A C12orf76 Silent p.L78L 0.26 TCGA-EE-A181-06 12 111098996 111098996 C T HVCN1 Silent p.R93R 0.44 TCGA-EE-A181-06 12 111701574 111701574 C T CUX2 Missense_Mutation p.L78F 0.19 deleterious(0) possibly_damaging(0.888) TCGA-EE-A181-06 12 111785719 111785719 C T CUX2 Missense_Mutation p.P1351S 0.11 tolerated_low_confidence(0.24) benign(0.002) TCGA-EE-A181-06 12 11183701 11183701 T A TAS2R31 Silent p.V78V 0.15 TCGA-EE-A181-06 12 112600322 112600322 G A HECTD4 Missense_Mutation p.P4230S 0.21 possibly_damaging(0.73) TCGA-EE-A181-06 12 112888197 112888197 T A PTPN11 Missense_Mutation p.F71L 0.19 deleterious(0) probably_damaging(0.963) TCGA-EE-A181-06 12 113425085 113425085 C T OAS2 Silent p.F140F 0.24 TCGA-EE-A181-06 12 113532692 113532692 C T DTX1 Silent p.G442G 0.17 TCGA-EE-A181-06 12 113543681 113543681 G A RASAL1 Silent p.V557V 0.24 TCGA-EE-A181-06 12 113565983 113565983 C T RASAL1 Silent p.R41R 0.23 TCGA-EE-A181-06 12 11461537 11461537 C T PRB4 Missense_Mutation p.G127E 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A181-06 12 11546548 11546548 G A PRB2 Missense_Mutation p.P155L 0.16 deleterious(0.01) unknown(0) TCGA-EE-A181-06 12 116421207 116421207 G A MED13L Missense_Mutation p.P1557L 0.13 deleterious(0.02) unknown(0) TCGA-EE-A181-06 12 116444160 116444160 C A MED13L Silent p.V765V 0.18 TCGA-EE-A181-06 12 117718614 117718614 C T NOS1 Nonsense_Mutation p.W480* 0.21 TCGA-EE-A181-06 12 117962911 117962911 G A KSR2 Silent p.F655F 0.14 TCGA-EE-A181-06 12 117962929 117962929 G A KSR2 Silent p.A649A 0.15 TCGA-EE-A181-06 12 117962930 117962930 G A KSR2 Missense_Mutation p.A649V 0.25 tolerated(0.09) benign(0.418) TCGA-EE-A181-06 12 118462717 118462717 C T RFC5 Silent p.I161I 0.18 TCGA-EE-A181-06 12 119631582 119631582 G A HSPB8 Silent p.Q170Q 0.17 TCGA-EE-A181-06 12 119968742 119968742 C T CCDC60 Silent p.I475I 0.28 TCGA-EE-A181-06 12 120151339 120151339 G A CIT Missense_Mutation p.S1474F 0.21 deleterious(0) possibly_damaging(0.569) TCGA-EE-A181-06 12 12022819 12022819 C T ETV6 Missense_Mutation p.R309W 0.16 deleterious(0.02) benign(0.045) TCGA-EE-A181-06 12 121248634 121248634 G A SPPL3 Missense_Mutation p.L27F 0.24 deleterious(0.01) possibly_damaging(0.804) TCGA-EE-A181-06 12 121431351 121431351 G A HNF1A Silent p.L185L 0.21 TCGA-EE-A181-06 12 121970721 121970721 G A KDM2B Silent p.F307F 0.12 TCGA-EE-A181-06 12 122213562 122213562 C T TMEM120B Silent p.F318F 0.14 TCGA-EE-A181-06 12 12277576 12277576 G A LRP6 Silent p.S1490S 0.46 TCGA-EE-A181-06 12 123201251 123201251 C T HCAR3 Missense_Mutation p.E12K 0.10 tolerated(0.77) benign(0.001) TCGA-EE-A181-06 12 123253445 123253445 G A DENR Missense_Mutation p.V177I 0.13 tolerated(0.34) possibly_damaging(0.705) TCGA-EE-A181-06 12 12339863 12339863 G A LRP6 Missense_Mutation p.P280S 0.40 deleterious(0) benign(0.044) TCGA-EE-A181-06 12 124093275 124093275 G A DDX55 Silent p.R150R 0.24 TCGA-EE-A181-06 12 124123845 124123845 T C GTF2H3 Silent p.D16D 0.29 TCGA-EE-A181-06 12 124132507 124132507 C T GTF2H3 Intron 0.19 TCGA-EE-A181-06 12 124267767 124267767 C T DNAH10 Nonsense_Mutation p.Q258* 0.15 TCGA-EE-A181-06 12 126138507 126138507 G A TMEM132B Missense_Mutation p.E830K 0.44 tolerated(0.09) possibly_damaging(0.447) TCGA-EE-A181-06 12 12815265 12815265 G A GPR19 Silent p.L40L 0.23 TCGA-EE-A181-06 12 129822329 129822329 G A TMEM132D Silent p.I383I 0.19 TCGA-EE-A181-06 12 132400954 132400954 C T ULK1 Silent p.S630S 0.25 TCGA-EE-A181-06 12 132505633 132505633 C T EP400 Missense_Mutation p.A1486V 0.14 unknown(0) TCGA-EE-A181-06 12 133252321 133252321 C T POLE Nonsense_Mutation p.W369* 0.21 TCGA-EE-A181-06 12 13720142 13720142 C T GRIN2B Silent p.K805K 0.25 TCGA-EE-A181-06 12 14982369 14982369 G A ART4 Missense_Mutation p.P294L 0.25 deleterious(0.03) benign(0.032) TCGA-EE-A181-06 12 15262186 15262186 T G RERG Missense_Mutation p.E153A 0.21 tolerated(0.51) benign(0.387) TCGA-EE-A181-06 12 18234401 18234401 C T RERGL Silent p.V114V 0.17 TCGA-EE-A181-06 12 18644479 18644479 G A PIK3C2G Missense_Mutation p.G886E 0.14 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A181-06 12 18658353 18658353 G A PIK3C2G Missense_Mutation p.G1053E 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 1940672 1940672 G A LRTM2 Missense_Mutation p.M213I 0.37 deleterious(0.04) benign(0.091) TCGA-EE-A181-06 12 21011408 21011408 G A LST3 Missense_Mutation p.G88R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 21015456 21015456 G A SLCO1B3 Missense_Mutation p.D198N 0.23 tolerated(0.11) possibly_damaging(0.866) TCGA-EE-A181-06 12 21172303 21172303 C T SLCO1B7 Silent p.F69F 0.17 TCGA-EE-A181-06 12 21331521 21331521 G A SLCO1B1 Missense_Mutation p.E165K 0.19 deleterious(0.02) benign(0.344) TCGA-EE-A181-06 12 21358869 21358869 G A SLCO1B1 Missense_Mutation p.E467K 0.14 tolerated(0.5) benign(0.029) TCGA-EE-A181-06 12 21450370 21450370 C T SLCO1A2 Missense_Mutation p.G348E 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 12 21472419 21472419 C T SLCO1A2 Intron 0.25 TCGA-EE-A181-06 12 21695464 21695464 G A GYS2 Silent p.F537F 0.29 TCGA-EE-A181-06 12 21995375 21995375 G A ABCC9 Missense_Mutation p.R1116C 0.14 deleterious(0) probably_damaging(0.931) TCGA-EE-A181-06 12 25031487 25031487 G A BCAT1 Missense_Mutation p.R175C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 26377269 26377269 C T SSPN Missense_Mutation p.S108L 0.18 deleterious(0.02) possibly_damaging(0.633) TCGA-EE-A181-06 12 27908299 27908299 T G MRPS35 Silent p.V296V 0.19 TCGA-EE-A181-06 12 29446149 29446149 A G FAR2 Intron 0.41 TCGA-EE-A181-06 12 31244760 31244760 C T DDX11 Silent p.I399I 0.15 TCGA-EE-A181-06 12 33031083 33031083 G A PKP2 Missense_Mutation p.P244L 0.13 tolerated(0.18) probably_damaging(0.951) TCGA-EE-A181-06 12 33031961 33031961 G A PKP2 Missense_Mutation p.L77F 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A181-06 12 33535331 33535331 C T SYT10 Silent p.E441E 0.18 TCGA-EE-A181-06 12 3701474 3701474 G A PRMT8 Missense_Mutation p.E353K 0.15 tolerated(0.25) benign(0.049) TCGA-EE-A181-06 12 40223908 40223908 C G SLC2A13 Missense_Mutation p.G481A 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A181-06 12 40681237 40681237 G A LRRK2 Missense_Mutation p.G862E 0.13 tolerated(0.31) benign(0.003) TCGA-EE-A181-06 12 41463807 41463807 C T CNTN1 Silent p.A1009A 0.21 TCGA-EE-A181-06 12 43822244 43822244 C T ADAMTS20 Missense_Mutation p.E1249K 0.17 tolerated(0.09) benign(0.272) TCGA-EE-A181-06 12 43858400 43858400 G A ADAMTS20 Silent p.P501P 0.19 TCGA-EE-A181-06 12 43858401 43858401 G A ADAMTS20 Missense_Mutation p.P501L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 43945032 43945032 G A ADAMTS20 Missense_Mutation p.P45S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 45410243 45410243 G A DBX2 Silent p.V282V 0.20 TCGA-EE-A181-06 12 45771870 45771870 T C ANO6 Missense_Mutation p.V401A 0.23 deleterious(0.04) possibly_damaging(0.787) TCGA-EE-A181-06 12 4634441 4634441 T C C12orf4 Missense_Mutation p.N236S 0.18 tolerated(0.37) benign(0.076) TCGA-EE-A181-06 12 4700454 4700454 G A DYRK4 Silent p.L36L 0.24 TCGA-EE-A181-06 12 47178909 47178909 T A SLC38A4 Missense_Mutation p.L126F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 12 4722944 4722944 C T DYRK4 3'UTR 0.15 TCGA-EE-A181-06 12 4722945 4722945 C T DYRK4 3'UTR 0.16 TCGA-EE-A181-06 12 4737076 4737076 G A AKAP3 Missense_Mutation p.S331L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 47471829 47471829 C T AMIGO2 Silent p.T319T 0.14 TCGA-EE-A181-06 12 47628852 47628852 C T PCED1B Silent p.I2I 0.16 TCGA-EE-A181-06 12 47629792 47629792 C T PCED1B Silent p.L316L 0.20 TCGA-EE-A181-06 12 49254900 49254900 G A RND1 Silent p.I111I 0.21 TCGA-EE-A181-06 12 49390579 49390579 G A DDN Missense_Mutation p.L694F 0.38 deleterious_low_confidence(0.03) benign(0.006) TCGA-EE-A181-06 12 49434979 49434979 C T KMT2D Missense_Mutation p.A2192T 0.31 possibly_damaging(0.844) TCGA-EE-A181-06 12 50186494 50186494 G A NCKAP5L Missense_Mutation p.P1206S 0.43 tolerated(0.26) benign(0.033) TCGA-EE-A181-06 12 51685531 51685531 C T BIN2 Silent p.G453G 0.17 TCGA-EE-A181-06 12 51846044 51846044 G A SLC4A8 Splice_Site p.X138_splice 0.24 TCGA-EE-A181-06 12 51888893 51888893 C T SLC4A8 Silent p.F978F 0.34 TCGA-EE-A181-06 12 52162718 52162718 G A SCN8A Missense_Mutation p.D991N 0.26 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 12 52200862 52200862 C T SCN8A Silent p.I1864I 0.27 TCGA-EE-A181-06 12 52387901 52387901 C T ACVR1B 3'UTR 0.21 TCGA-EE-A181-06 12 52788801 52788801 C T KRT82 Missense_Mutation p.M500I 0.29 tolerated_low_confidence(0.36) benign(0) TCGA-EE-A181-06 12 52827787 52827787 C T KRT75 Missense_Mutation p.G101E 0.16 deleterious(0) possibly_damaging(0.559) TCGA-EE-A181-06 12 52845666 52845666 C T KRT6B Missense_Mutation p.G66D 0.15 deleterious(0.01) unknown(0) TCGA-EE-A181-06 12 52944022 52944022 C T KRT71 Silent p.R149R 0.22 TCGA-EE-A181-06 12 52984626 52984626 C T KRT72 Silent p.K361K 0.14 TCGA-EE-A181-06 12 53002204 53002204 C T KRT73 Missense_Mutation p.G467S 0.32 tolerated_low_confidence(0.18) benign(0.057) TCGA-EE-A181-06 12 53041994 53041994 C T KRT2 Missense_Mutation p.R362K 0.23 tolerated(0.71) benign(0.14) TCGA-EE-A181-06 12 53185594 53185594 C T KRT3 Missense_Mutation p.E399K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 53189777 53189777 G A KRT3 Missense_Mutation p.S17F 0.22 deleterious(0) unknown(0) TCGA-EE-A181-06 12 53202105 53202105 C T KRT4 Silent p.R366R 0.12 TCGA-EE-A181-06 12 53421854 53421854 G A EIF4B Silent p.R287R 0.26 TCGA-EE-A181-06 12 53709514 53709514 C T AAAS Missense_Mutation p.E102K 0.21 tolerated(0.06) benign(0.107) TCGA-EE-A181-06 12 54686971 54686971 G A NFE2 Silent p.A103A 0.35 TCGA-EE-A181-06 12 55356625 55356625 A C TESPA1 Missense_Mutation p.L353V 0.29 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-EE-A181-06 12 55420921 55420921 G A NEUROD4 Missense_Mutation p.G233E 0.19 tolerated(0.59) benign(0.016) TCGA-EE-A181-06 12 55523961 55523961 G A OR9K2 Missense_Mutation p.G137R 0.17 deleterious(0.02) possibly_damaging(0.643) TCGA-EE-A181-06 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.25 TCGA-EE-A181-06 12 55820171 55820171 C T OR6C76 Missense_Mutation p.S45F 0.15 tolerated_low_confidence(0.07) benign(0.028) TCGA-EE-A181-06 12 55846762 55846762 C T OR6C2 Silent p.F255F 0.19 TCGA-EE-A181-06 12 55846822 55846822 T C OR6C2 Silent p.L275L 0.19 TCGA-EE-A181-06 12 55863430 55863430 C T OR6C70 Missense_Mutation p.D165N 0.22 deleterious_low_confidence(0.03) benign(0.168) TCGA-EE-A181-06 12 56088048 56088048 G A ITGA7 Silent p.S812S 0.11 TCGA-EE-A181-06 12 56188601 56188601 G A SARNP Missense_Mutation p.R123W 0.22 deleterious(0.04) benign(0.01) TCGA-EE-A181-06 12 56188603 56188603 G A SARNP Missense_Mutation p.A122V 0.18 tolerated(0.29) benign(0.014) TCGA-EE-A181-06 12 56297237 56297237 G A WIBG Missense_Mutation p.P22L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 56488219 56488219 C T ERBB3 Nonsense_Mutation p.R580* 0.26 TCGA-EE-A181-06 12 56558217 56558217 G A SMARCC2 Silent p.N1146N 0.24 TCGA-EE-A181-06 12 56811925 56811925 G A TIMELESS Silent p.S1149S 0.24 TCGA-EE-A181-06 12 56812082 56812082 G A TIMELESS Missense_Mutation p.S1097F 0.19 tolerated(0.33) probably_damaging(0.951) TCGA-EE-A181-06 12 57000471 57000471 C T BAZ2A Silent p.K715K 0.21 TCGA-EE-A181-06 12 57009263 57009263 A C BAZ2A Missense_Mutation p.C91G 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A181-06 12 57038721 57038721 G A ATP5B Missense_Mutation p.T110I 0.44 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A181-06 12 5708775 5708775 C T ANO2 Missense_Mutation p.R703Q 0.23 deleterious(0.01) benign(0.232) TCGA-EE-A181-06 12 57178711 57178711 T C HSD17B6 Missense_Mutation p.M216T 0.18 tolerated(0.64) benign(0) TCGA-EE-A181-06 12 5744470 5744470 C T ANO2 Missense_Mutation p.R555Q 0.21 deleterious(0.02) possibly_damaging(0.65) TCGA-EE-A181-06 12 57577214 57577214 C A LRP1 Silent p.P1905P 0.30 TCGA-EE-A181-06 12 57603862 57603862 C T LRP1 Missense_Mutation p.P4164S 0.21 probably_damaging(0.982) TCGA-EE-A181-06 12 57603863 57603863 C T LRP1 Missense_Mutation p.P4164L 0.24 possibly_damaging(0.895) TCGA-EE-A181-06 12 57849565 57849565 G A INHBE Silent p.G82G 0.55 TCGA-EE-A181-06 12 57865064 57865064 C T GLI1 Silent p.L847L 0.25 TCGA-EE-A181-06 12 57961391 57961391 G A KIF5A Missense_Mutation p.G235E 0.24 deleterious(0) probably_damaging(0.972) TCGA-EE-A181-06 12 6061640 6061640 C T VWF Missense_Mutation p.V2678I 0.33 tolerated(0.14) benign(0.417) TCGA-EE-A181-06 12 6128270 6128270 G A VWF Silent p.F1438F 0.19 TCGA-EE-A181-06 12 6132876 6132876 G A VWF Silent p.F1100F 0.26 TCGA-EE-A181-06 12 63042297 63042297 G A PPM1H Missense_Mutation p.P506L 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 12 66345283 66345283 C T HMGA2 Intron 0.18 TCGA-EE-A181-06 12 6701628 6701628 G A CHD4 Missense_Mutation p.A960V 0.19 deleterious(0.04) probably_damaging(0.918) TCGA-EE-A181-06 12 670597 670597 C A B4GALNT3 Missense_Mutation p.R993S 0.28 deleterious(0.05) probably_damaging(0.977) TCGA-EE-A181-06 12 68052205 68052205 C T DYRK2 Silent p.P506P 0.23 TCGA-EE-A181-06 12 69743908 69743908 G A LYZ Missense_Mutation p.E53K 0.19 deleterious(0) probably_damaging(0.988) TCGA-EE-A181-06 12 70048977 70048977 C T BEST3 Missense_Mutation p.E573K 0.19 tolerated_low_confidence(0.65) benign(0) TCGA-EE-A181-06 12 70928615 70928615 C T PTPRB Missense_Mutation p.G2068S 0.17 tolerated(1) benign(0.002) TCGA-EE-A181-06 12 70954554 70954554 C T PTPRB Silent p.T1443T 0.25 TCGA-EE-A181-06 12 71286612 71286612 G A PTPRR Silent p.S68S 0.16 TCGA-EE-A181-06 12 7172536 7172536 C T C1S Missense_Mutation p.T217I 0.22 deleterious(0.05) possibly_damaging(0.673) TCGA-EE-A181-06 12 7172537 7172537 C T C1S Silent p.T217T 0.22 TCGA-EE-A181-06 12 71977917 71977917 C T LGR5 Silent p.S709S 0.14 TCGA-EE-A181-06 12 71978225 71978225 C T LGR5 Missense_Mutation p.P812L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 72335409 72335409 G A TPH2 Missense_Mutation p.G51R 0.26 tolerated(0.43) benign(0.024) TCGA-EE-A181-06 12 72338093 72338093 T C TPH2 Missense_Mutation p.V92A 0.31 tolerated(0.49) benign(0.004) TCGA-EE-A181-06 12 72338444 72338444 C T TPH2 Missense_Mutation p.S173F 0.16 deleterious(0) possibly_damaging(0.473) TCGA-EE-A181-06 12 7249305 7249305 C T C1RL Missense_Mutation p.M382I 0.28 tolerated(0.06) benign(0.021) TCGA-EE-A181-06 12 73012738 73012738 C T TRHDE Missense_Mutation p.L752F 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A181-06 12 73056896 73056896 C T TRHDE Missense_Mutation p.T999I 0.29 tolerated(0.3) benign(0.043) TCGA-EE-A181-06 12 7476905 7476905 G A ACSM4 Missense_Mutation p.D449N 0.24 tolerated(0.36) benign(0.004) TCGA-EE-A181-06 12 75601362 75601362 G A KCNC2 Silent p.F134F 0.36 TCGA-EE-A181-06 12 7596743 7596743 G A CD163L1 5'UTR 0.15 TCGA-EE-A181-06 12 7596744 7596744 A G CD163L1 5'UTR 0.13 TCGA-EE-A181-06 12 7640497 7640497 C T CD163 Missense_Mutation p.G536E 0.33 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 12 7805350 7805350 G A APOBEC1 Silent p.I42I 0.34 TCGA-EE-A181-06 12 7883484 7883484 T G CLEC4C Silent p.R136R 0.21 TCGA-EE-A181-06 12 79679637 79679637 C T SYT1 Silent p.I79I 0.20 TCGA-EE-A181-06 12 79747310 79747310 C T SYT1 Missense_Mutation p.S280F 0.18 deleterious(0) probably_damaging(0.972) TCGA-EE-A181-06 12 81111096 81111096 G A MYF5 Missense_Mutation p.R85Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 12 81111097 81111097 G A MYF5 Silent p.R85R 0.38 TCGA-EE-A181-06 12 81112169 81112169 G A MYF5 Silent p.K178K 0.18 TCGA-EE-A181-06 12 81283035 81283035 G A LIN7A Nonsense_Mutation p.R66* 0.34 TCGA-EE-A181-06 12 8212210 8212210 G A C3AR1 Missense_Mutation p.P191L 0.20 tolerated(0.73) benign(0) TCGA-EE-A181-06 12 86198390 86198390 T A RASSF9 3'UTR 0.41 TCGA-EE-A181-06 12 88390163 88390163 C T C12orf50 Missense_Mutation p.E157K 0.31 deleterious(0.01) possibly_damaging(0.447) TCGA-EE-A181-06 12 91347786 91347786 C T CCER1 Missense_Mutation p.G245E 0.29 tolerated(1) benign(0.009) TCGA-EE-A181-06 12 91363844 91363844 T A EPYC Missense_Mutation p.N259Y 0.22 deleterious(0) benign(0.396) TCGA-EE-A181-06 12 91449250 91449250 G A KERA Missense_Mutation p.S270L 0.36 deleterious(0) probably_damaging(0.981) TCGA-EE-A181-06 12 91546954 91546954 G A DCN Missense_Mutation p.S222F 0.17 deleterious(0) probably_damaging(0.958) TCGA-EE-A181-06 12 91552258 91552258 C T DCN Missense_Mutation p.S118N 0.16 deleterious(0.05) benign(0.002) TCGA-EE-A181-06 12 9230416 9230416 G A A2M Nonsense_Mutation p.R1053* 0.19 TCGA-EE-A181-06 12 9241798 9241798 G A A2M Missense_Mutation p.S923L 0.22 deleterious(0.01) benign(0.064) TCGA-EE-A181-06 12 94575305 94575305 C T PLXNC1 Silent p.L429L 0.19 TCGA-EE-A181-06 12 95228213 95228213 G A MIR492 RNA 0.29 TCGA-EE-A181-06 12 95501342 95501342 G A FGD6 Silent p.F1110F 0.21 TCGA-EE-A181-06 12 96052866 96052866 T C NTN4 Missense_Mutation p.K628R 0.15 tolerated_low_confidence(0.2) benign(0.015) TCGA-EE-A181-06 12 96052993 96052993 C T NTN4 Missense_Mutation p.E586K 0.12 tolerated(0.09) benign(0.042) TCGA-EE-A181-06 12 96292215 96292215 G A CCDC38 Nonsense_Mutation p.Q188* 0.18 TCGA-EE-A181-06 12 97078949 97078949 G A C12orf55 Missense_Mutation p.E1983K 0.24 tolerated(0.65) benign(0.001) TCGA-EE-A181-06 12 97137619 97137619 G A C12orf55 Silent p.K2496K 0.23 TCGA-EE-A181-06 12 99145163 99145163 G A ANKS1B Silent p.P1214P 0.23 TCGA-EE-A181-06 12 992579 992579 C T WNK1 Silent p.L1170L 0.19 TCGA-EE-A181-06 13 101890181 101890181 G A NALCN Silent p.F453F 0.27 TCGA-EE-A181-06 13 102105194 102105194 C T ITGBL1 Missense_Mutation p.P4S 0.41 tolerated_low_confidence(0.57) benign(0.01) TCGA-EE-A181-06 13 102379087 102379087 A C FGF14 Missense_Mutation p.L166W 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 13 103459777 103459777 C T BIVM-ERCC5 Missense_Mutation p.P26S 0.29 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EE-A181-06 13 103510651 103510651 G A BIVM-ERCC5 Silent p.A611A 0.23 TCGA-EE-A181-06 13 103515342 103515342 C T BIVM-ERCC5 Silent p.L1041L 0.29 TCGA-EE-A181-06 13 103703708 103703708 C T SLC10A2 Nonsense_Mutation p.W220* 0.17 TCGA-EE-A181-06 13 111367820 111367820 C T ING1 Silent p.S10S 0.35 TCGA-EE-A181-06 13 111367821 111367821 C T ING1 Missense_Mutation p.P11S 0.33 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A181-06 13 111558405 111558405 G A ANKRD10 Missense_Mutation p.L144F 0.31 deleterious(0.01) probably_damaging(0.914) TCGA-EE-A181-06 13 114107681 114107681 C T ADPRHL1 Silent p.K24K 0.21 TCGA-EE-A181-06 13 20006662 20006662 A G TPTE2 Silent p.P391P 0.11 TCGA-EE-A181-06 13 20048070 20048070 G A TPTE2 Nonsense_Mutation p.R126* 0.25 TCGA-EE-A181-06 13 25009128 25009128 G A PARP4 Missense_Mutation p.P1384L 0.27 tolerated(0.2) benign(0) TCGA-EE-A181-06 13 25272817 25272817 G A ATP12A Missense_Mutation p.D518N 0.21 tolerated(0.3) benign(0.046) TCGA-EE-A181-06 13 25367433 25367433 G A RNF17 Missense_Mutation p.G397R 0.24 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A181-06 13 26153975 26153975 G A ATP8A2 Missense_Mutation p.D633N 0.23 deleterious(0.04) probably_damaging(0.959) TCGA-EE-A181-06 13 27241696 27241696 C T WASF3 Missense_Mutation p.S104F 0.19 deleterious(0) probably_damaging(0.982) TCGA-EE-A181-06 13 27256818 27256818 C T WASF3 Missense_Mutation p.P353L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A181-06 13 28963985 28963985 C T FLT1 Silent p.R639R 0.26 TCGA-EE-A181-06 13 29001422 29001422 G A FLT1 Missense_Mutation p.S437L 0.29 deleterious(0) possibly_damaging(0.819) TCGA-EE-A181-06 13 29001425 29001425 G A FLT1 Missense_Mutation p.S436L 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A181-06 13 29005400 29005400 G A FLT1 Silent p.S287S 0.21 TCGA-EE-A181-06 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.16 tolerated(0.2) benign(0.002) TCGA-EE-A181-06 13 29599065 29599065 A G MTUS2 Missense_Mutation p.E87G 0.23 deleterious(0.01) benign(0.039) TCGA-EE-A181-06 13 31204981 31204981 C T USPL1 Missense_Mutation p.P80S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 13 33704318 33704318 C T STARD13 Missense_Mutation p.G166R 0.25 tolerated(0.14) benign(0.002) TCGA-EE-A181-06 13 33760145 33760145 G A STARD13 Intron 0.21 TCGA-EE-A181-06 13 36223864 36223864 C T NBEA Missense_Mutation p.P2594S 0.34 tolerated(0.12) benign(0.124) TCGA-EE-A181-06 13 37581124 37581124 C T EXOSC8 Silent p.L135L 0.30 TCGA-EE-A181-06 13 37678874 37678874 G A CSNK1A1L Missense_Mutation p.P174S 0.23 deleterious_low_confidence(0.04) benign(0.012) TCGA-EE-A181-06 13 42774011 42774011 C T DGKH Missense_Mutation p.S820L 0.23 deleterious(0.02) possibly_damaging(0.531) TCGA-EE-A181-06 13 42876501 42876501 C T AKAP11 Missense_Mutation p.L1207F 0.20 deleterious(0) benign(0.444) TCGA-EE-A181-06 13 46543227 46543227 A G ZC3H13 Missense_Mutation p.F1151S 0.11 unknown(0) TCGA-EE-A181-06 13 46559534 46559534 G A ZC3H13 Missense_Mutation p.R540C 0.24 probably_damaging(0.997) TCGA-EE-A181-06 13 49705416 49705416 A T FNDC3A Silent p.P132P 0.16 TCGA-EE-A181-06 13 49705417 49705417 C T FNDC3A Missense_Mutation p.P133S 0.16 tolerated(0.48) possibly_damaging(0.78) TCGA-EE-A181-06 13 51915300 51915300 G A SERPINE3 Missense_Mutation p.G25R 0.16 tolerated(0.31) benign(0.374) TCGA-EE-A181-06 13 52952647 52952647 C T THSD1 Silent p.T486T 0.30 TCGA-EE-A181-06 13 52971631 52971631 C T THSD1 Missense_Mutation p.E253K 0.20 tolerated(0.19) benign(0.031) TCGA-EE-A181-06 13 72063173 72063173 G A DACH1 Missense_Mutation p.P562S 0.31 possibly_damaging(0.804) TCGA-EE-A181-06 13 73349449 73349449 A G DIS3 Missense_Mutation p.L296P 0.21 deleterious(0) possibly_damaging(0.823) TCGA-EE-A181-06 13 76423255 76423255 T A LMO7 Silent p.S1164S 0.20 TCGA-EE-A181-06 13 96263712 96263712 G A DZIP1 Silent p.I450I 0.20 TCGA-EE-A181-06 14 101429389 101429389 C T AL132709.8 Intron 0.28 TCGA-EE-A181-06 14 101533139 101533139 C T MIR541 3'Flank 0.12 TCGA-EE-A181-06 14 102453932 102453932 C T DYNC1H1 Missense_Mutation p.S894F 0.35 possibly_damaging(0.873) TCGA-EE-A181-06 14 103336546 103336546 C T TRAF3 Missense_Mutation p.S3L 0.25 tolerated_low_confidence(0.07) benign(0.001) TCGA-EE-A181-06 14 106091534 106091534 G A IGHG4 Silent p.V120V 0.15 TCGA-EE-A181-06 14 106111114 106111114 C T IGHG2 Missense_Mutation p.G5D 0.12 deleterious(0) possibly_damaging(0.466) TCGA-EE-A181-06 14 106235781 106235781 C T IGHG3 Silent p.V309V 0.26 TCGA-EE-A181-06 14 106815853 106815853 C T IGHV3-33 Missense_Mutation p.G74R 0.16 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A181-06 14 106926339 106926339 G A IGHV3-43 Missense_Mutation p.S68F 0.23 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-EE-A181-06 14 106967307 106967307 C T IGHV1-46 Silent p.K31K 0.22 TCGA-EE-A181-06 14 20295937 20295937 G A OR4N2 Silent p.G110G 0.32 TCGA-EE-A181-06 14 20344609 20344609 C T OR4K2 Silent p.F61F 0.22 TCGA-EE-A181-06 14 20444427 20444427 G A OR4K15 Silent p.R250R 0.30 TCGA-EE-A181-06 14 20665543 20665543 C T OR11G2 Silent p.L17L 0.42 TCGA-EE-A181-06 14 20665672 20665672 G A OR11G2 Missense_Mutation p.E60K 0.29 tolerated(0.19) benign(0.031) TCGA-EE-A181-06 14 20711637 20711637 C T OR11H4 Silent p.I229I 0.22 TCGA-EE-A181-06 14 20767022 20767022 G A TTC5 Silent p.S191S 0.20 TCGA-EE-A181-06 14 20845648 20845648 G A TEP1 Missense_Mutation p.S1960F 0.25 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A181-06 14 21052493 21052493 C T RNASE11 Silent p.Q47Q 0.20 TCGA-EE-A181-06 14 21162135 21162135 C T ANG Missense_Mutation p.H138Y 0.22 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 14 21543585 21543585 C T ARHGEF40 Silent p.A515A 0.26 TCGA-EE-A181-06 14 22133687 22133687 C T OR4E2 Missense_Mutation p.H131Y 0.30 deleterious(0.05) possibly_damaging(0.616) TCGA-EE-A181-06 14 22554751 22554751 C T TRAV23DV6 Missense_Mutation p.S8L 0.24 tolerated(1) benign(0.216) TCGA-EE-A181-06 14 22924265 22924265 G A TRDJ4 Missense_Mutation p.G9E 0.26 unknown(0) TCGA-EE-A181-06 14 22932783 22932783 G A TRDC Missense_Mutation p.E100K 0.33 tolerated(0.43) benign(0.037) TCGA-EE-A181-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.21 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A181-06 14 23886167 23886167 G A MYH7 Silent p.S1518S 0.25 TCGA-EE-A181-06 14 23898176 23898176 G A MYH7 Silent p.F465F 0.48 TCGA-EE-A181-06 14 24523473 24523473 T C LRRC16B Missense_Mutation p.L70P 0.22 deleterious(0) probably_damaging(0.98) TCGA-EE-A181-06 14 24737609 24737609 A C RABGGTA Missense_Mutation p.C342G 0.21 deleterious(0.03) possibly_damaging(0.694) TCGA-EE-A181-06 14 24739638 24739638 G A RABGGTA Silent p.S47S 0.26 TCGA-EE-A181-06 14 31598272 31598272 G A HECTD1 Silent p.V1435V 0.21 TCGA-EE-A181-06 14 32560773 32560773 C T ARHGAP5 Missense_Mutation p.H300Y 0.17 tolerated(1) benign(0.216) TCGA-EE-A181-06 14 33836458 33836458 G A NPAS3 Missense_Mutation p.G151E 0.35 deleterious(0) probably_damaging(0.982) TCGA-EE-A181-06 14 35253102 35253102 A C BAZ1A Missense_Mutation p.C621W 0.21 deleterious(0) probably_damaging(0.971) TCGA-EE-A181-06 14 39502343 39502343 A G SEC23A 3'UTR 0.34 TCGA-EE-A181-06 14 39502344 39502344 G A SEC23A 3'UTR 0.34 TCGA-EE-A181-06 14 50295833 50295833 G A NEMF Missense_Mutation p.P391S 0.22 deleterious(0.04) benign(0.236) TCGA-EE-A181-06 14 51107525 51107525 G A SAV1 Missense_Mutation p.P298L 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 14 51259445 51259445 G A NIN Silent p.A140A 0.28 TCGA-EE-A181-06 14 52955155 52955155 G A TXNDC16 Missense_Mutation p.S345F 0.18 tolerated(0.07) benign(0.005) TCGA-EE-A181-06 14 53560128 53560128 C A DDHD1 Silent p.V349V 0.21 TCGA-EE-A181-06 14 55818037 55818037 G A FBXO34 Missense_Mutation p.R310Q 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A181-06 14 58953857 58953857 C T KIAA0586 Missense_Mutation p.P1146S 0.25 tolerated(0.2) benign(0.406) TCGA-EE-A181-06 14 59942848 59942848 C T L3HYPDH Missense_Mutation p.E255K 0.28 tolerated(0.2) benign(0.112) TCGA-EE-A181-06 14 60752381 60752381 C T PPM1A Missense_Mutation p.P365S 0.16 tolerated(0.06) benign(0.101) TCGA-EE-A181-06 14 63447701 63447701 G A KCNH5 Silent p.V277V 0.15 TCGA-EE-A181-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.36 TCGA-EE-A181-06 14 64694463 64694463 C T SYNE2 3'Flank 0.33 TCGA-EE-A181-06 14 65210244 65210244 G A PLEKHG3 Silent p.E1105E 0.25 TCGA-EE-A181-06 14 65390783 65390783 T C CHURC1-FNTB Silent p.F39F 0.29 TCGA-EE-A181-06 14 67940539 67940539 C T TMEM229B Silent p.V34V 0.37 TCGA-EE-A181-06 14 68236426 68236426 G A ZFYVE26 Missense_Mutation p.R1836C 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 14 68250125 68250125 G A ZFYVE26 Silent p.S1248S 0.24 TCGA-EE-A181-06 14 69347701 69347701 G A ACTN1 Silent p.I653I 0.14 TCGA-EE-A181-06 14 72137886 72137886 C T SIPA1L1 Missense_Mutation p.P769L 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 14 72138062 72138062 C T SIPA1L1 Missense_Mutation p.P828S 0.21 tolerated(0.83) benign(0.012) TCGA-EE-A181-06 14 72190570 72190570 C T SIPA1L1 Missense_Mutation p.T1493I 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A181-06 14 73137875 73137875 G A DPF3 Missense_Mutation p.S348L 0.18 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A181-06 14 73138024 73138024 C T DPF3 Silent p.R298R 0.18 TCGA-EE-A181-06 14 73409798 73409798 C T DCAF4 Silent p.L176L 0.28 TCGA-EE-A181-06 14 74500775 74500775 C T CCDC176 Silent p.F132F 0.22 TCGA-EE-A181-06 14 74824711 74824711 C T VRTN Silent p.L409L 0.22 TCGA-EE-A181-06 14 75276307 75276307 C T YLPM1 Silent p.L1582L 0.50 TCGA-EE-A181-06 14 75376364 75376364 C T RPS6KL1 Silent p.V384V 0.18 TCGA-EE-A181-06 14 76965187 76965187 C T ESRRB Intron 0.29 TCGA-EE-A181-06 14 78399771 78399771 C T ADCK1 3'UTR 0.31 TCGA-EE-A181-06 14 79181283 79181283 C T NRXN3 Silent p.F242F 0.25 TCGA-EE-A181-06 14 80971266 80971266 G A CEP128 Missense_Mutation p.S1057L 0.30 deleterious(0) possibly_damaging(0.714) TCGA-EE-A181-06 14 81554364 81554364 A G TSHR Silent p.L128L 0.24 TCGA-EE-A181-06 14 86089651 86089651 C T FLRT2 Missense_Mutation p.S598F 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 14 88417021 88417021 A G GALC Silent p.F411F 0.16 TCGA-EE-A181-06 14 88945739 88945739 G A PTPN21 Missense_Mutation p.T679I 0.26 tolerated_low_confidence(0.22) benign(0) TCGA-EE-A181-06 14 89153569 89153569 C T EML5 Missense_Mutation p.G949R 0.22 deleterious(0) possibly_damaging(0.776) TCGA-EE-A181-06 14 90755259 90755259 G A NRDE2 Silent p.L820L 0.29 TCGA-EE-A181-06 14 91338330 91338330 G A RPS6KA5 3'UTR 0.58 TCGA-EE-A181-06 14 91791245 91791245 C T CCDC88C Missense_Mutation p.R407Q 0.21 deleterious(0.01) benign(0.382) TCGA-EE-A181-06 14 92091266 92091266 C T CATSPERB Missense_Mutation p.E610K 0.18 tolerated(0.16) benign(0.003) TCGA-EE-A181-06 14 92102861 92102861 G A CATSPERB Silent p.I550I 0.27 TCGA-EE-A181-06 14 94413705 94413705 C T ASB2 Missense_Mutation p.G348S 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A181-06 14 94420665 94420665 C T ASB2 Missense_Mutation p.R159Q 0.24 tolerated(0.38) benign(0.002) TCGA-EE-A181-06 14 94465975 94465975 G A LINC00521 RNA 0.25 TCGA-EE-A181-06 14 94697620 94697620 G A PPP4R4 Missense_Mutation p.E162K 0.16 tolerated(0.13) benign(0.032) TCGA-EE-A181-06 14 94731805 94731805 C T PPP4R4 Missense_Mutation p.S760L 0.35 deleterious_low_confidence(0.02) benign(0.002) TCGA-EE-A181-06 14 94754734 94754734 C T SERPINA10 Missense_Mutation p.G294E 0.38 deleterious(0) probably_damaging(0.958) TCGA-EE-A181-06 14 94776305 94776305 C A SERPINA6 Nonsense_Mutation p.E218* 0.17 TCGA-EE-A181-06 14 94909110 94909110 C T SERPINA11 Missense_Mutation p.G368R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 14 94962795 94962795 G A SERPINA12 Missense_Mutation p.L274F 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 14 95030272 95030272 C T SERPINA4 Silent p.F151F 0.27 TCGA-EE-A181-06 14 95577700 95577700 G A DICER1 Missense_Mutation p.P737L 0.26 deleterious(0.02) possibly_damaging(0.883) TCGA-EE-A181-06 14 96136832 96136832 C T TCL6 RNA 0.32 TCGA-EE-A181-06 14 96136833 96136833 C T TCL6 RNA 0.29 TCGA-EE-A181-06 14 96811707 96811707 G A ATG2B Missense_Mutation p.P114L 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A181-06 14 99927618 99927618 C T SETD3 Missense_Mutation p.A86T 0.17 tolerated(0.07) possibly_damaging(0.772) TCGA-EE-A181-06 15 102346365 102346365 C T OR4F6 Missense_Mutation p.S148F 0.40 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EE-A181-06 15 20649654 20649654 G A HERC2P3 RNA 0.13 TCGA-EE-A181-06 15 22062376 22062376 C T POTEB Missense_Mutation p.R413K 0.14 tolerated(0.22) benign(0.003) TCGA-EE-A181-06 15 22369418 22369418 C T OR4M2 Silent p.F281F 0.16 TCGA-EE-A181-06 15 22369419 22369419 C T OR4M2 Missense_Mutation p.P282S 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.20 tolerated(0.3) benign(0.009) TCGA-EE-A181-06 15 22473327 22473327 G A IGHV4OR15-8 Silent p.L9L 0.18 TCGA-EE-A181-06 15 22473332 22473332 G A IGHV4OR15-8 Missense_Mutation p.L8F 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-EE-A181-06 15 23890471 23890471 G A MAGEL2 Missense_Mutation p.P204S 0.18 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A181-06 15 23931540 23931540 G A NDN Silent p.I275I 0.14 TCGA-EE-A181-06 15 24921861 24921861 G A NPAP1 Missense_Mutation p.E283K 0.46 tolerated(0.44) benign(0.247) TCGA-EE-A181-06 15 24922308 24922308 C T NPAP1 Silent p.L432L 0.16 TCGA-EE-A181-06 15 24923762 24923762 G A NPAP1 Silent p.L916L 0.35 TCGA-EE-A181-06 15 25227023 25227023 A C SNRPN 3'Flank 0.24 TCGA-EE-A181-06 15 25442574 25442574 G A SNORD115-14 3'Flank 0.33 TCGA-EE-A181-06 15 25449569 25449569 G C SNORD115-19 RNA 0.14 TCGA-EE-A181-06 15 25455073 25455073 G A SNORD115-22 RNA 0.10 TCGA-EE-A181-06 15 25463857 25463857 G A SNORD115-27 5'Flank 0.15 TCGA-EE-A181-06 15 25488769 25488769 G A SNORD115-40 RNA 0.17 TCGA-EE-A181-06 15 25494349 25494349 C T SNORD115-43 RNA 0.15 TCGA-EE-A181-06 15 25585310 25585310 G A UBE3A Missense_Mutation p.T810M 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 15 28358367 28358367 G A HERC2 Silent p.I4694I 0.17 TCGA-EE-A181-06 15 28473473 28473473 G A HERC2 Silent p.F1785F 0.37 TCGA-EE-A181-06 15 28515964 28515964 G A HERC2 Silent p.T378T 0.30 TCGA-EE-A181-06 15 32928677 32928677 C T ARHGAP11A Missense_Mutation p.P568L 0.42 tolerated(0.13) benign(0.008) TCGA-EE-A181-06 15 34521959 34521959 G A EMC4 Missense_Mutation p.M174I 0.17 tolerated(0.27) benign(0.011) TCGA-EE-A181-06 15 35082572 35082572 C T ACTC1 3'UTR 0.45 TCGA-EE-A181-06 15 35084655 35084655 G A ACTC1 Silent p.Y190Y 0.19 TCGA-EE-A181-06 15 35192911 35192911 G A AQR Missense_Mutation p.L719F 0.13 deleterious(0) possibly_damaging(0.598) TCGA-EE-A181-06 15 40468867 40468867 C T BUB1B Nonsense_Mutation p.Q192* 0.24 TCGA-EE-A181-06 15 40498544 40498544 C T BUB1B Missense_Mutation p.P632S 0.22 tolerated(0.23) benign(0.009) TCGA-EE-A181-06 15 40509708 40509708 C T BUB1B Missense_Mutation p.P897L 0.45 tolerated(0.13) benign(0.032) TCGA-EE-A181-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.18 deleterious_low_confidence(0.01) benign(0.118) TCGA-EE-A181-06 15 40707679 40707679 C T IVD Nonsense_Mutation p.Q323* 0.56 TCGA-EE-A181-06 15 40949251 40949251 C T CASC5 Missense_Mutation p.P2192S 0.60 deleterious(0) probably_damaging(0.991) TCGA-EE-A181-06 15 41146691 41146691 A G SPINT1 Missense_Mutation p.D362G 0.20 deleterious(0) probably_damaging(0.954) TCGA-EE-A181-06 15 41191637 41191637 C T VPS18 Silent p.S207S 0.17 TCGA-EE-A181-06 15 41482327 41482327 C T EXD1 Splice_Site p.X231_splice 0.58 TCGA-EE-A181-06 15 41816304 41816304 C T RPAP1 Missense_Mutation p.E742K 0.24 tolerated(0.37) benign(0.004) TCGA-EE-A181-06 15 42028729 42028729 C T MGA Missense_Mutation p.P1423S 0.64 tolerated(0.37) benign(0.082) TCGA-EE-A181-06 15 42127241 42127241 C T JMJD7-PLA2G4B Missense_Mutation p.R98C 0.32 deleterious_low_confidence(0) benign(0.082) TCGA-EE-A181-06 15 42276774 42276774 G A PLA2G4E Missense_Mutation p.P749L 0.26 deleterious(0.05) possibly_damaging(0.87) TCGA-EE-A181-06 15 43044692 43044692 G A TTBK2 Missense_Mutation p.H918Y 0.46 tolerated_low_confidence(0.05) benign(0.305) TCGA-EE-A181-06 15 43483740 43483740 C T CCNDBP1 Missense_Mutation p.P243S 0.51 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A181-06 15 43500504 43500504 C T EPB42 Nonsense_Mutation p.W363* 0.14 TCGA-EE-A181-06 15 43818877 43818877 G A MAP1A Missense_Mutation p.D1736N 0.30 benign(0.011) TCGA-EE-A181-06 15 49436470 49436470 C T COPS2 Nonsense_Mutation p.W67* 0.14 TCGA-EE-A181-06 15 52060516 52060516 G A TMOD2 Missense_Mutation p.G62S 0.33 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 15 52060517 52060517 G A TMOD2 Missense_Mutation p.G62D 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 15 57384057 57384057 C T TCF12 Missense_Mutation p.S98F 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A181-06 15 57384059 57384059 C T TCF12 Missense_Mutation p.P99S 0.20 tolerated(1) probably_damaging(0.966) TCGA-EE-A181-06 15 57730232 57730232 A C CGNL1 Missense_Mutation p.Q12P 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A181-06 15 57910298 57910298 G A MYZAP Missense_Mutation p.R77Q 0.29 tolerated(0.45) benign(0.181) TCGA-EE-A181-06 15 58252978 58252978 C T ALDH1A2 Missense_Mutation p.G492R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 15 59523928 59523928 G T MYO1E Silent p.T161T 0.14 TCGA-EE-A181-06 15 62165568 62165568 A G VPS13C Silent p.V3485V 0.14 TCGA-EE-A181-06 15 62269286 62269286 C T VPS13C Missense_Mutation p.M801I 0.15 tolerated(0.06) benign(0.443) TCGA-EE-A181-06 15 63031708 63031708 C T TLN2 Silent p.F1283F 0.22 TCGA-EE-A181-06 15 64792324 64792324 G A ZNF609 Missense_Mutation p.E236K 0.26 deleterious(0.02) benign(0.281) TCGA-EE-A181-06 15 64967235 64967235 A G ZNF609 Missense_Mutation p.K728E 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 15 64967429 64967429 C G ZNF609 Silent p.A792A 0.59 TCGA-EE-A181-06 15 68118534 68118534 T A SKOR1 Missense_Mutation p.L309Q 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A181-06 15 69222999 69222999 C T SPESP1 Missense_Mutation p.P3S 0.16 tolerated(0.32) probably_damaging(0.932) TCGA-EE-A181-06 15 70959232 70959232 G A UACA Missense_Mutation p.A1264V 0.32 deleterious(0.05) benign(0.011) TCGA-EE-A181-06 15 71211413 71211413 C T LRRC49 Missense_Mutation p.H203Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 15 71305224 71305224 C T LRRC49 Missense_Mutation p.R564C 0.12 deleterious(0) probably_damaging(0.985) TCGA-EE-A181-06 15 72338974 72338974 A T MYO9A Intron 0.35 TCGA-EE-A181-06 15 72455749 72455749 G A GRAMD2 Missense_Mutation p.P272S 0.24 tolerated(0.28) benign(0.001) TCGA-EE-A181-06 15 72553027 72553027 G A PARP6 Missense_Mutation p.S183F 0.12 deleterious(0.02) benign(0.288) TCGA-EE-A181-06 15 72699517 72699517 A G TMEM202 Missense_Mutation p.Y193C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 15 73052767 73052767 G A ADPGK Silent p.L208L 0.18 TCGA-EE-A181-06 15 74425652 74425652 G A ISLR2 Missense_Mutation p.G186D 0.14 tolerated(0.13) benign(0.248) TCGA-EE-A181-06 15 74467801 74467801 C T ISLR Missense_Mutation p.S201F 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A181-06 15 75500482 75500482 C T C15orf39 Missense_Mutation p.P698L 0.15 deleterious(0) possibly_damaging(0.851) TCGA-EE-A181-06 15 76067956 76067956 C T RP11-24M17.5 RNA 0.21 TCGA-EE-A181-06 15 76073326 76073326 G A RN7SL319P 5'Flank 0.12 TCGA-EE-A181-06 15 76646476 76646476 G A SCAPER Silent p.I1287I 0.09 TCGA-EE-A181-06 15 77059417 77059417 C A SCAPER Missense_Mutation p.V421F 0.38 deleterious(0.04) benign(0.22) TCGA-EE-A181-06 15 77064234 77064234 C T SCAPER Missense_Mutation p.R366Q 0.31 tolerated(0.9) benign(0) TCGA-EE-A181-06 15 79339138 79339138 G A RASGRF1 Silent p.S276S 0.35 TCGA-EE-A181-06 15 79748522 79748522 G C KIAA1024 Missense_Mutation p.L11F 0.44 deleterious(0) possibly_damaging(0.826) TCGA-EE-A181-06 15 79749389 79749389 C T KIAA1024 Silent p.F300F 0.20 TCGA-EE-A181-06 15 80452764 80452764 C T FAH Silent p.S109S 0.10 TCGA-EE-A181-06 15 80743333 80743333 C T ARNT2 Silent p.S48S 0.21 TCGA-EE-A181-06 15 81172181 81172181 C T KIAA1199 Silent p.I122I 0.33 TCGA-EE-A181-06 15 81592017 81592017 C T IL16 Missense_Mutation p.P784S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 15 82532857 82532857 G A EFTUD1 Missense_Mutation p.R140C 0.13 deleterious(0) probably_damaging(0.953) TCGA-EE-A181-06 15 82532858 82532858 G A EFTUD1 Silent p.I139I 0.12 TCGA-EE-A181-06 15 83447561 83447561 G A FSD2 Silent p.F356F 0.57 TCGA-EE-A181-06 15 83456026 83456026 C T FSD2 Silent p.E39E 0.12 TCGA-EE-A181-06 15 83527798 83527798 C T HOMER2 Silent p.K170K 0.24 TCGA-EE-A181-06 15 84286846 84286846 C T SH3GL3 Missense_Mutation p.P284L 0.11 tolerated(0.09) benign(0.001) TCGA-EE-A181-06 15 89379428 89379428 C T ACAN Intron 0.24 TCGA-EE-A181-06 15 89398695 89398695 G A ACAN Missense_Mutation p.G960E 0.28 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A181-06 15 89400086 89400086 C T ACAN Missense_Mutation p.P1424S 0.20 tolerated(0.65) benign(0.009) TCGA-EE-A181-06 15 90335429 90335429 T G ANPEP Silent p.A830A 0.23 TCGA-EE-A181-06 15 90335554 90335554 G A ANPEP Missense_Mutation p.H789Y 0.28 deleterious(0.02) benign(0.033) TCGA-EE-A181-06 15 90992859 90992859 C T IQGAP1 Silent p.A382A 0.22 TCGA-EE-A181-06 15 90999484 90999484 C T IQGAP1 Silent p.V571V 0.39 TCGA-EE-A181-06 15 91419086 91419086 C T FURIN Missense_Mutation p.P39L 0.21 tolerated(0.12) benign(0.005) TCGA-EE-A181-06 15 91543792 91543792 C G VPS33B Silent p.L503L 0.17 TCGA-EE-A181-06 15 91809816 91809816 C T SV2B Missense_Mutation p.S338F 0.21 deleterious(0.02) benign(0.142) TCGA-EE-A181-06 15 91811791 91811791 G A SV2B Silent p.T443T 0.22 TCGA-EE-A181-06 15 91811827 91811827 G A SV2B Silent p.V455V 0.18 TCGA-EE-A181-06 15 94983425 94983425 G A MCTP2 Nonsense_Mutation p.W702* 0.20 TCGA-EE-A181-06 15 97328437 97328437 C T SPATA8 3'UTR 0.29 TCGA-EE-A181-06 15 99759151 99759151 G A TTC23 Missense_Mutation p.S136F 0.15 tolerated(0.19) probably_damaging(0.945) TCGA-EE-A181-06 16 12136782 12136782 G A SNX29 Silent p.E92E 0.19 TCGA-EE-A181-06 16 15706616 15706616 G A KIAA0430 Missense_Mutation p.S1091L 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A181-06 16 1574818 1574818 G A IFT140 Silent p.V988V 0.24 TCGA-EE-A181-06 16 15841936 15841936 G A MYH11 Silent p.P723P 0.24 TCGA-EE-A181-06 16 15841937 15841937 G A MYH11 Missense_Mutation p.P723L 0.23 probably_damaging(1) TCGA-EE-A181-06 16 15851813 15851813 C T MYH11 Silent p.K489K 0.15 TCGA-EE-A181-06 16 1633354 1633354 C T IFT140 Missense_Mutation p.A465T 0.14 tolerated(0.62) benign(0.003) TCGA-EE-A181-06 16 1703084 1703084 C T CRAMP1L Missense_Mutation p.P322S 0.24 tolerated(0.06) possibly_damaging(0.619) TCGA-EE-A181-06 16 17221635 17221635 G A XYLT1 Missense_Mutation p.A704V 0.26 tolerated(0.62) possibly_damaging(0.558) TCGA-EE-A181-06 16 1838626 1838626 A G NUBP2 Missense_Mutation p.I243V 0.31 tolerated(0.56) benign(0.003) TCGA-EE-A181-06 16 18851080 18851080 G A SMG1 Silent p.L2295L 0.20 TCGA-EE-A181-06 16 19032952 19032952 G A TMC7 Silent p.G154G 0.19 TCGA-EE-A181-06 16 19468053 19468053 G A TMC5 Intron 0.22 TCGA-EE-A181-06 16 19475205 19475205 C T TMC5 Silent p.S448S 0.15 TCGA-EE-A181-06 16 19477445 19477445 C T TMC5 Silent p.T509T 0.16 TCGA-EE-A181-06 16 19498601 19498601 C T TMC5 Silent p.F842F 0.19 TCGA-EE-A181-06 16 19501851 19501851 G A TMC5 Missense_Mutation p.G903E 0.22 tolerated(1) benign(0.012) TCGA-EE-A181-06 16 19641094 19641094 C A C16orf62 Nonsense_Mutation p.Y591* 0.28 TCGA-EE-A181-06 16 20043082 20043082 C T GPR139 Missense_Mutation p.G346E 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A181-06 16 20043949 20043949 C T GPR139 Missense_Mutation p.R57K 0.20 tolerated(0.1) probably_damaging(0.987) TCGA-EE-A181-06 16 20370625 20370625 C G PDILT 3'UTR 0.23 TCGA-EE-A181-06 16 20380952 20380952 G A PDILT Silent p.F326F 0.18 TCGA-EE-A181-06 16 20486756 20486756 C T ACSM2A Missense_Mutation p.L323F 0.20 tolerated(0.17) possibly_damaging(0.453) TCGA-EE-A181-06 16 20871502 20871502 G A DCUN1D3 Silent p.A207A 0.17 TCGA-EE-A181-06 16 20975073 20975073 G A DNAH3 Missense_Mutation p.T3378I 0.24 deleterious(0.03) possibly_damaging(0.822) TCGA-EE-A181-06 16 20975406 20975406 T C DNAH3 Missense_Mutation p.K3267R 0.22 deleterious(0.03) possibly_damaging(0.651) TCGA-EE-A181-06 16 21078707 21078707 G A DNAH3 Nonsense_Mutation p.Q1139* 0.15 TCGA-EE-A181-06 16 21215354 21215354 C T ZP2 Silent p.T323T 0.25 TCGA-EE-A181-06 16 23080496 23080496 G A USP31 Missense_Mutation p.P977L 0.18 tolerated_low_confidence(0.19) benign(0.05) TCGA-EE-A181-06 16 23208639 23208639 C T SCNN1G Missense_Mutation p.S323F 0.50 deleterious(0) probably_damaging(0.956) TCGA-EE-A181-06 16 2354107 2354107 C T ABCA3 Missense_Mutation p.D444N 0.31 tolerated(0.09) benign(0.445) TCGA-EE-A181-06 16 23718080 23718080 C T ERN2 Missense_Mutation p.R209Q 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 16 24196822 24196822 C T PRKCB Silent p.S552S 0.20 TCGA-EE-A181-06 16 24582974 24582974 C T RBBP6 Silent p.S1529S 0.30 TCGA-EE-A181-06 16 24801572 24801572 C T TNRC6A Missense_Mutation p.P537S 0.18 tolerated(0.52) benign(0.06) TCGA-EE-A181-06 16 24829927 24829927 C T TNRC6A Silent p.S1662S 0.28 TCGA-EE-A181-06 16 24920276 24920276 G A SLC5A11 Silent p.Q503Q 0.24 TCGA-EE-A181-06 16 2647217 2647217 C T PDPK1 Missense_Mutation p.P499S 0.29 deleterious(0) possibly_damaging(0.688) TCGA-EE-A181-06 16 27504020 27504020 G A GTF3C1 Missense_Mutation p.S964L 0.23 tolerated(0.12) possibly_damaging(0.896) TCGA-EE-A181-06 16 27523104 27523104 G A GTF3C1 Silent p.F364F 0.24 TCGA-EE-A181-06 16 28330371 28330371 C T SBK1 Silent p.F94F 0.24 TCGA-EE-A181-06 16 28515058 28515058 G A IL27 Silent p.L87L 0.14 TCGA-EE-A181-06 16 28618084 28618084 C T SULT1A1 Missense_Mutation p.E198K 0.22 tolerated(0.28) benign(0.051) TCGA-EE-A181-06 16 28855778 28855778 G A TUFM Missense_Mutation p.P260L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 16 28856102 28856102 C T TUFM Missense_Mutation p.E201K 0.18 deleterious(0) probably_damaging(0.938) TCGA-EE-A181-06 16 28883917 28883917 C T SH2B1 Silent p.S596S 0.30 TCGA-EE-A181-06 16 29994207 29994207 C T TAOK2 Silent p.A328A 0.18 TCGA-EE-A181-06 16 29997712 29997712 C T TAOK2 Missense_Mutation p.R707C 0.32 deleterious(0) probably_damaging(0.96) TCGA-EE-A181-06 16 30036947 30036947 G A FAM57B Intron 0.33 TCGA-EE-A181-06 16 30500427 30500427 C T ITGAL Missense_Mutation p.S344F 0.40 deleterious(0) possibly_damaging(0.872) TCGA-EE-A181-06 16 30593843 30593843 C T ZNF785 3'UTR 0.15 TCGA-EE-A181-06 16 31049834 31049834 C T STX4 Silent p.L190L 0.20 TCGA-EE-A181-06 16 31332933 31332933 G A ITGAM Missense_Mutation p.D664N 0.24 tolerated(0.2) probably_damaging(1) TCGA-EE-A181-06 16 31413511 31413511 A C ITGAD Missense_Mutation p.Q168P 0.15 deleterious(0.02) benign(0.442) TCGA-EE-A181-06 16 3493159 3493159 G A ZNF597 5'UTR 0.15 TCGA-EE-A181-06 16 3493160 3493160 G A ZNF597 5'UTR 0.15 TCGA-EE-A181-06 16 3611771 3611771 G A NLRC3 Silent p.F696F 0.22 TCGA-EE-A181-06 16 4311888 4311888 G A TFAP4 Silent p.S139S 0.29 TCGA-EE-A181-06 16 47117221 47117221 C T NETO2 Missense_Mutation p.E497K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-EE-A181-06 16 47627449 47627449 C T PHKB Silent p.F369F 0.18 TCGA-EE-A181-06 16 48245042 48245042 G A ABCC11 Silent p.V475V 0.24 TCGA-EE-A181-06 16 48261816 48261816 C T ABCC11 Nonsense_Mutation p.W99* 0.24 TCGA-EE-A181-06 16 4927102 4927102 C T UBN1 Silent p.G1085G 0.19 TCGA-EE-A181-06 16 4935871 4935871 G A PPL Nonsense_Mutation p.Q929* 0.13 TCGA-EE-A181-06 16 50354206 50354206 G A BRD7 Missense_Mutation p.P571L 0.41 tolerated(0.08) probably_damaging(1) TCGA-EE-A181-06 16 50383950 50383950 G A BRD7 Missense_Mutation p.S192F 0.22 deleterious(0) probably_damaging(0.974) TCGA-EE-A181-06 16 50785695 50785695 C T CYLD Missense_Mutation p.P229S 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A181-06 16 53859927 53859927 C T FTO Missense_Mutation p.T92I 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 16 57685217 57685217 C T GPR56 Missense_Mutation p.S57F 0.18 tolerated(0.05) benign(0.031) TCGA-EE-A181-06 16 58292312 58292312 C T CCDC113 Missense_Mutation p.S144L 0.38 deleterious(0) benign(0.011) TCGA-EE-A181-06 16 602428 602428 T C CAPN15 Missense_Mutation p.F879L 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 16 61687654 61687654 C T CDH8 Missense_Mutation p.G753E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 16 61687655 61687655 C T CDH8 Missense_Mutation p.G753R 0.13 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 16 62055363 62055363 C T CDH8 5'UTR 0.38 TCGA-EE-A181-06 16 66592128 66592128 C T CKLF Silent p.I38I 0.26 TCGA-EE-A181-06 16 67472455 67472455 G A ATP6V0D1 Silent p.I344I 0.23 TCGA-EE-A181-06 16 677464 677464 G A RAB40C Missense_Mutation p.G230S 0.14 tolerated_low_confidence(0.1) probably_damaging(0.994) TCGA-EE-A181-06 16 67765479 67765479 G A RANBP10 Missense_Mutation p.S262L 0.40 tolerated(0.09) possibly_damaging(0.871) TCGA-EE-A181-06 16 67861275 67861275 G A TSNAXIP1 Missense_Mutation p.M542I 0.19 tolerated(0.34) benign(0.001) TCGA-EE-A181-06 16 67877059 67877059 G A THAP11 Missense_Mutation p.G201D 0.27 deleterious(0.02) possibly_damaging(0.827) TCGA-EE-A181-06 16 68024017 68024017 G A DPEP2 Silent p.V309V 0.23 TCGA-EE-A181-06 16 69832662 69832662 C T WWP2 Missense_Mutation p.P50S 0.18 tolerated(0.23) benign(0.003) TCGA-EE-A181-06 16 70557456 70557456 C T COG4 5'UTR 0.29 TCGA-EE-A181-06 16 70816996 70816996 G A VAC14 Missense_Mutation p.P251S 0.17 tolerated(0.13) probably_damaging(0.962) TCGA-EE-A181-06 16 70841527 70841527 T G HYDIN Missense_Mutation p.T5108P 0.19 benign(0.047) TCGA-EE-A181-06 16 70841528 70841528 C T HYDIN Silent p.E5107E 0.20 TCGA-EE-A181-06 16 70841530 70841530 C T HYDIN Missense_Mutation p.E5107K 0.19 possibly_damaging(0.801) TCGA-EE-A181-06 16 70926280 70926280 G A HYDIN Missense_Mutation p.P3134L 0.27 probably_damaging(0.958) TCGA-EE-A181-06 16 71423651 71423651 G A CALB2 Splice_Site p.X234_splice 0.20 TCGA-EE-A181-06 16 72153954 72153954 C T PMFBP1 Missense_Mutation p.E935K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 16 72160027 72160027 G A PMFBP1 Missense_Mutation p.A698V 0.19 tolerated(0.53) benign(0.005) TCGA-EE-A181-06 16 74487052 74487052 G A GLG1 Intron 0.26 TCGA-EE-A181-06 16 74923603 74923603 G A WDR59 Silent p.S731S 0.22 TCGA-EE-A181-06 16 7568348 7568348 G A RBFOX1 Missense_Mutation p.S96N 0.11 tolerated(0.29) benign(0.002) TCGA-EE-A181-06 16 77896678 77896678 C T VAT1L Missense_Mutation p.P205S 0.34 tolerated(0.1) possibly_damaging(0.495) TCGA-EE-A181-06 16 80646538 80646538 G A CDYL2 Silent p.I401I 0.27 TCGA-EE-A181-06 16 81902886 81902886 C T PLCG2 Missense_Mutation p.L183F 0.17 deleterious(0.01) benign(0.132) TCGA-EE-A181-06 16 81990323 81990323 C T PLCG2 Silent p.S1198S 0.21 TCGA-EE-A181-06 16 83711861 83711861 G A CDH13 Missense_Mutation p.E492K 0.30 tolerated(0.11) probably_damaging(0.997) TCGA-EE-A181-06 16 84270431 84270431 T A KCNG4 Nonsense_Mutation p.K221* 0.19 TCGA-EE-A181-06 16 84270731 84270731 C T KCNG4 Missense_Mutation p.G121R 0.39 tolerated(1) probably_damaging(0.919) TCGA-EE-A181-06 16 84444324 84444324 G A ATP2C2 Silent p.E156E 0.26 TCGA-EE-A181-06 16 84472843 84472843 G A ATP2C2 Missense_Mutation p.R353Q 0.22 deleterious(0) probably_damaging(0.975) TCGA-EE-A181-06 16 84472844 84472844 G A ATP2C2 Silent p.R353R 0.22 TCGA-EE-A181-06 16 87873356 87873356 G A SLC7A5 Silent p.F297F 0.27 TCGA-EE-A181-06 16 89293787 89293787 C T ZNF778 Missense_Mutation p.P336L 0.21 deleterious(0.04) benign(0.003) TCGA-EE-A181-06 16 89293788 89293788 C T ZNF778 Silent p.P336P 0.20 TCGA-EE-A181-06 16 9858202 9858202 G A GRIN2A Missense_Mutation p.R1067W 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 16 9892287 9892287 A T GRIN2A Missense_Mutation p.L735M 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 17 10296170 10296170 T G MYH8 Missense_Mutation p.Q1814P 0.19 deleterious(0) possibly_damaging(0.882) TCGA-EE-A181-06 17 10302164 10302164 A T MYH8 Missense_Mutation p.V1301D 0.25 deleterious(0) possibly_damaging(0.629) TCGA-EE-A181-06 17 10304276 10304276 C T MYH8 Silent p.K1085K 0.33 TCGA-EE-A181-06 17 10304634 10304634 G A MYH8 Silent p.I1022I 0.60 TCGA-EE-A181-06 17 10408304 10408304 G A MYH1 Silent p.F838F 0.41 TCGA-EE-A181-06 17 10432765 10432765 G A MYH2 Missense_Mutation p.R1051C 0.31 deleterious(0.03) benign(0.032) TCGA-EE-A181-06 17 10555830 10555830 G A MYH3 Silent p.F85F 0.66 TCGA-EE-A181-06 17 11572799 11572799 C T DNAH9 Missense_Mutation p.S1014L 0.64 benign(0.285) TCGA-EE-A181-06 17 11583132 11583132 G A DNAH9 Missense_Mutation p.E1138K 0.41 benign(0.003) TCGA-EE-A181-06 17 11604564 11604564 G A DNAH9 Silent p.Q1717Q 0.15 TCGA-EE-A181-06 17 12656424 12656424 C T MYOCD Nonsense_Mutation p.Q607* 0.36 TCGA-EE-A181-06 17 1584244 1584244 G A PRPF8 Missense_Mutation p.P324L 0.21 deleterious(0.04) benign(0.259) TCGA-EE-A181-06 17 16593942 16593942 C T CCDC144A Silent p.V76V 0.38 TCGA-EE-A181-06 17 16593943 16593943 C T CCDC144A Missense_Mutation p.R77C 0.38 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A181-06 17 18022511 18022511 G A MYO15A Missense_Mutation p.A133T 0.81 probably_damaging(0.933) TCGA-EE-A181-06 17 18043974 18043974 G A MYO15A Missense_Mutation p.M1785I 0.20 unknown(0) TCGA-EE-A181-06 17 18186042 18186042 T C TOP3A Missense_Mutation p.D664G 0.39 tolerated(0.07) benign(0.169) TCGA-EE-A181-06 17 19612071 19612071 C T SLC47A2 Silent p.V163V 0.22 TCGA-EE-A181-06 17 21319401 21319401 C T KCNJ12 Silent p.I249I 0.12 TCGA-EE-A181-06 17 2290583 2290583 G A MNT Missense_Mutation p.T454I 0.35 deleterious(0) unknown(0) TCGA-EE-A181-06 17 25937142 25937142 C T KSR1 Missense_Mutation p.P644S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 26696819 26696819 C T VTN Missense_Mutation p.D80N 0.40 tolerated(0.3) benign(0.004) TCGA-EE-A181-06 17 26883864 26883864 G A PIGS Missense_Mutation p.P354L 0.68 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 17 26947568 26947568 T A KIAA0100 Missense_Mutation p.I1775F 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 17 27207791 27207791 G A FLOT2 Silent p.N396N 0.14 TCGA-EE-A181-06 17 27308796 27308796 G A SEZ6 Missense_Mutation p.P106L 0.33 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A181-06 17 27909803 27909803 G A GIT1 Silent p.F106F 0.21 TCGA-EE-A181-06 17 28772953 28772953 C T CPD Missense_Mutation p.L930F 0.68 tolerated(0.66) possibly_damaging(0.61) TCGA-EE-A181-06 17 29533315 29533315 C T NF1 Nonsense_Mutation p.R440* 0.43 TCGA-EE-A181-06 17 29665022 29665022 C T NF1 Intron 0.19 TCGA-EE-A181-06 17 2966780 2966780 C T OR1D5 Missense_Mutation p.G41E 0.38 deleterious(0.01) benign(0.434) TCGA-EE-A181-06 17 29684049 29684049 C T NF1 Missense_Mutation p.L2604F 0.52 deleterious(0) probably_damaging(0.986) TCGA-EE-A181-06 17 30348289 30348289 C T LRRC37B Silent p.L42L 0.09 TCGA-EE-A181-06 17 3181597 3181597 C T OR3A2 Silent p.V211V 0.24 TCGA-EE-A181-06 17 32598267 32598267 C T CCL7 Missense_Mutation p.P60L 0.16 deleterious(0.02) possibly_damaging(0.599) TCGA-EE-A181-06 17 33495250 33495250 C T UNC45B Missense_Mutation p.A441V 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 17 33520657 33520657 A T SLC35G3 Missense_Mutation p.F224I 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 17 33679365 33679365 G A SLFN11 3'UTR 0.23 TCGA-EE-A181-06 17 33679392 33679392 G A SLFN11 Missense_Mutation p.P897S 0.50 tolerated_low_confidence(0.62) benign(0.003) TCGA-EE-A181-06 17 33687286 33687286 C T SLFN11 Missense_Mutation p.E392K 0.10 tolerated(0.08) benign(0.05) TCGA-EE-A181-06 17 33769167 33769167 G A SLFN13 Missense_Mutation p.A446V 0.31 deleterious(0) probably_damaging(0.992) TCGA-EE-A181-06 17 33806470 33806470 T A SLFN12L Silent p.G253G 0.21 TCGA-EE-A181-06 17 34067432 34067432 G A RASL10B Nonsense_Mutation p.W74* 0.13 TCGA-EE-A181-06 17 34072405 34072405 C T GAS2L2 Missense_Mutation p.R704K 0.29 tolerated(0.63) benign(0.002) TCGA-EE-A181-06 17 34073271 34073271 C T GAS2L2 Silent p.R415R 0.14 TCGA-EE-A181-06 17 34171161 34171161 C T TAF15 Missense_Mutation p.P363S 0.14 deleterious_low_confidence(0.03) benign(0.444) TCGA-EE-A181-06 17 35872649 35872649 C T DUSP14 Missense_Mutation p.T92I 0.20 tolerated(0.19) benign(0.004) TCGA-EE-A181-06 17 35913243 35913243 A G SYNRG Missense_Mutation p.V861A 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A181-06 17 35914040 35914040 G A SYNRG Silent p.F595F 0.17 TCGA-EE-A181-06 17 3651330 3651330 G A ITGAE Missense_Mutation p.R681C 0.20 tolerated(0.17) probably_damaging(0.91) TCGA-EE-A181-06 17 36522283 36522283 C T SOCS7 Missense_Mutation p.L392F 0.18 deleterious(0.03) possibly_damaging(0.488) TCGA-EE-A181-06 17 36874168 36874168 T G MLLT6 Missense_Mutation p.V635G 0.21 deleterious(0) unknown(0) TCGA-EE-A181-06 17 37455277 37455277 G A FBXL20 Missense_Mutation p.R99C 0.40 deleterious(0) possibly_damaging(0.899) TCGA-EE-A181-06 17 37903012 37903012 G A GRB7 Silent p.E510E 0.15 TCGA-EE-A181-06 17 3806518 3806518 T C P2RX1 Missense_Mutation p.N242S 0.38 tolerated(0.49) benign(0.072) TCGA-EE-A181-06 17 38078714 38078714 G A ORMDL3 3'UTR 0.13 TCGA-EE-A181-06 17 38857395 38857395 C T KRT24 Silent p.E284E 0.50 TCGA-EE-A181-06 17 38859483 38859483 G A KRT24 Silent p.L155L 0.14 TCGA-EE-A181-06 17 39140423 39140423 G A KRT40 Missense_Mutation p.P35S 0.52 tolerated(0.18) benign(0.02) TCGA-EE-A181-06 17 39150152 39150152 G C KRTAP3-3 Missense_Mutation p.F66L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EE-A181-06 17 39155897 39155897 G A KRTAP3-2 Missense_Mutation p.S70F 0.21 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EE-A181-06 17 39190932 39190932 G A KRTAP1-3 Missense_Mutation p.P48S 0.15 tolerated(0.1) unknown(0) TCGA-EE-A181-06 17 39471906 39471906 C T KRTAP17-1 5'UTR 0.14 TCGA-EE-A181-06 17 39502485 39502485 G A KRT33A Silent p.L367L 0.11 TCGA-EE-A181-06 17 39580746 39580746 G A KRT37 Silent p.C10C 0.16 TCGA-EE-A181-06 17 39635090 39635090 G A KRT35 Missense_Mutation p.T290I 0.16 deleterious(0.04) possibly_damaging(0.524) TCGA-EE-A181-06 17 3975958 3975958 G A ZZEF1 Missense_Mutation p.P1260S 0.44 tolerated(0.37) benign(0.007) TCGA-EE-A181-06 17 39776940 39776940 G A KRT17 Silent p.Y384Y 0.20 TCGA-EE-A181-06 17 40063723 40063723 G A ACLY Missense_Mutation p.P240L 0.09 tolerated(0.09) benign(0.01) TCGA-EE-A181-06 17 40063724 40063724 G A ACLY Missense_Mutation p.P240S 0.10 tolerated(0.12) benign(0.066) TCGA-EE-A181-06 17 40070107 40070107 G A ACLY Missense_Mutation p.S7L 0.30 tolerated(0.28) benign(0.009) TCGA-EE-A181-06 17 40353753 40353753 G A STAT5B 3'UTR 0.15 TCGA-EE-A181-06 17 40485735 40485735 C T STAT3 Silent p.R335R 0.16 TCGA-EE-A181-06 17 40500457 40500457 G A STAT3 Silent p.F26F 0.48 TCGA-EE-A181-06 17 41004938 41004938 C T AOC3 Silent p.F526F 0.46 TCGA-EE-A181-06 17 41143109 41143109 C T RUNDC1 Silent p.I406I 0.36 TCGA-EE-A181-06 17 41610101 41610101 C T ETV4 Missense_Mutation p.R251K 0.14 tolerated(0.3) benign(0.006) TCGA-EE-A181-06 17 42156005 42156005 G A HDAC5 Silent p.F1065F 0.09 TCGA-EE-A181-06 17 42636534 42636534 C T FZD2 Missense_Mutation p.S493L 0.32 tolerated(0.18) possibly_damaging(0.523) TCGA-EE-A181-06 17 42745168 42745168 C T C17orf104 Missense_Mutation p.S630L 0.14 tolerated(0.54) benign(0.002) TCGA-EE-A181-06 17 42828219 42828219 C T DBF4B Silent p.S482S 0.09 TCGA-EE-A181-06 17 42854576 42854576 G A ADAM11 Missense_Mutation p.G575E 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 17 42882669 42882669 G A GJC1 Missense_Mutation p.L173F 0.17 deleterious(0) probably_damaging(0.986) TCGA-EE-A181-06 17 42883130 42883130 A G GJC1 Missense_Mutation p.F19S 0.54 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A181-06 17 42937815 42937815 G A EFTUD2 Silent p.P568P 0.18 TCGA-EE-A181-06 17 43333205 43333205 T C SPATA32 Missense_Mutation p.N115S 0.18 tolerated(0.52) benign(0.02) TCGA-EE-A181-06 17 43473413 43473413 G A ARHGAP27 Silent p.F433F 0.41 TCGA-EE-A181-06 17 43555385 43555385 G A PLEKHM1 Silent p.I59I 0.19 TCGA-EE-A181-06 17 44076766 44076766 C T STH Nonsense_Mutation p.Q41* 0.20 TCGA-EE-A181-06 17 45297383 45297383 G A MYL4 Missense_Mutation p.E93K 0.26 deleterious(0.05) possibly_damaging(0.895) TCGA-EE-A181-06 17 4540539 4540539 G A ALOX15 Silent p.F274F 0.22 TCGA-EE-A181-06 17 45914518 45914518 G A LRRC46 3'UTR 0.33 TCGA-EE-A181-06 17 4623752 4623752 C T ARRB2 Missense_Mutation p.P377S 0.20 tolerated(0.67) benign(0.234) TCGA-EE-A181-06 17 46441166 46441166 C T SKAP1 Missense_Mutation p.D55N 0.13 deleterious(0.01) benign(0.004) TCGA-EE-A181-06 17 47118803 47118803 G A IGF2BP1 Silent p.K294K 0.11 TCGA-EE-A181-06 17 47304087 47304087 G A PHOSPHO1 5'UTR 0.22 TCGA-EE-A181-06 17 48221007 48221007 G A PPP1R9B Silent p.F525F 0.18 TCGA-EE-A181-06 17 48267365 48267365 G A COL1A1 Silent p.P852P 0.19 TCGA-EE-A181-06 17 48655906 48655906 G A CACNA1G Missense_Mutation p.G761D 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 17 48683300 48683300 C T CACNA1G Silent p.T1446T 0.14 TCGA-EE-A181-06 17 48741436 48741436 C T ABCC3 Silent p.P434P 0.11 TCGA-EE-A181-06 17 48777138 48777138 T C ANKRD40 Missense_Mutation p.T134A 0.38 tolerated(0.14) benign(0.038) TCGA-EE-A181-06 17 5086142 5086142 G A ZNF594 Silent p.S470S 0.21 TCGA-EE-A181-06 17 5086753 5086753 A C ZNF594 Missense_Mutation p.Y267D 0.73 deleterious(0) possibly_damaging(0.895) TCGA-EE-A181-06 17 55027862 55027862 G A COIL Silent p.S247S 0.48 TCGA-EE-A181-06 17 55183565 55183565 A T AKAP1 Missense_Mutation p.K247M 0.16 deleterious(0.04) benign(0.372) TCGA-EE-A181-06 17 56247303 56247303 G A OR4D2 Missense_Mutation p.G96D 0.13 deleterious(0.04) benign(0.12) TCGA-EE-A181-06 17 56557512 56557512 G A HSF5 Missense_Mutation p.R223W 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A181-06 17 57288609 57288609 C T SMG8 Silent p.S399S 0.20 TCGA-EE-A181-06 17 57650551 57650551 C T DHX40 Silent p.F167F 0.32 TCGA-EE-A181-06 17 59093262 59093262 G T BCAS3 Missense_Mutation p.G546V 0.21 tolerated(0.13) probably_damaging(0.97) TCGA-EE-A181-06 17 59560341 59560341 C T TBX4 Missense_Mutation p.R368C 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 17 60642473 60642473 G A TLK2 Missense_Mutation p.G315S 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 60741938 60741938 G A MRC2 Missense_Mutation p.G50R 0.13 tolerated(0.15) benign(0.216) TCGA-EE-A181-06 17 60741973 60741973 G A MRC2 Silent p.Q61Q 0.12 TCGA-EE-A181-06 17 60813389 60813389 C T MARCH10 Missense_Mutation p.D614N 0.20 tolerated(0.32) benign(0.358) TCGA-EE-A181-06 17 61571732 61571732 G A ACE Splice_Site p.X1094_splice 0.26 TCGA-EE-A181-06 17 61611489 61611489 C T KCNH6 Silent p.I306I 0.12 TCGA-EE-A181-06 17 62036630 62036630 G A SCN4A Missense_Mutation p.R672C 0.25 deleterious(0) probably_damaging(0.969) TCGA-EE-A181-06 17 62579637 62579637 C T SMURF2 Missense_Mutation p.G171R 0.09 deleterious(0) possibly_damaging(0.642) TCGA-EE-A181-06 17 6376061 6376061 C T PITPNM3 Missense_Mutation p.E449K 0.29 tolerated(0.07) possibly_damaging(0.544) TCGA-EE-A181-06 17 63822405 63822405 G A CEP112 Intron 0.21 TCGA-EE-A181-06 17 6387017 6387017 C T PITPNM3 Missense_Mutation p.G136E 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 17 6441390 6441390 G C PITPNM3 Missense_Mutation p.P12R 0.39 tolerated(0.45) unknown(0) TCGA-EE-A181-06 17 64734924 64734924 C T PRKCA Missense_Mutation p.L425F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 650806 650806 G A GEMIN4 Silent p.F159F 0.61 TCGA-EE-A181-06 17 65909118 65909118 A G BPTF Silent p.P1706P 0.16 TCGA-EE-A181-06 17 66339817 66339817 C T ARSG Silent p.G97G 0.24 TCGA-EE-A181-06 17 6684060 6684060 G A FBXO39 Silent p.R291R 0.52 TCGA-EE-A181-06 17 66864190 66864190 A C ABCA8 3'UTR 0.17 TCGA-EE-A181-06 17 66936911 66936911 G A ABCA8 Missense_Mutation p.P97S 0.24 tolerated(1) benign(0.02) TCGA-EE-A181-06 17 66938079 66938079 C T ABCA8 Splice_Site p.X32_splice 0.14 TCGA-EE-A181-06 17 67101675 67101675 C T ABCA6 Missense_Mutation p.E890K 0.23 tolerated(0.68) benign(0.086) TCGA-EE-A181-06 17 68171507 68171507 C T KCNJ2 Silent p.L109L 0.29 TCGA-EE-A181-06 17 7095232 7095232 G A DLG4 Silent p.P695P 0.18 TCGA-EE-A181-06 17 7095233 7095233 G A DLG4 Missense_Mutation p.P695L 0.18 deleterious(0) possibly_damaging(0.824) TCGA-EE-A181-06 17 7139776 7139776 G A PHF23 Missense_Mutation p.T157I 0.19 tolerated_low_confidence(0.09) benign(0.014) TCGA-EE-A181-06 17 72350305 72350305 G A KIF19 Silent p.R771R 0.17 TCGA-EE-A181-06 17 72366722 72366722 G A GPR142 Missense_Mutation p.E141K 0.19 deleterious(0.04) benign(0.13) TCGA-EE-A181-06 17 72436806 72436806 C T GPRC5C Silent p.I342I 0.56 TCGA-EE-A181-06 17 72436807 72436807 C T GPRC5C Missense_Mutation p.P343S 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 7250350 7250350 G A ACAP1 Missense_Mutation p.G378S 0.78 tolerated(1) benign(0.004) TCGA-EE-A181-06 17 72842259 72842259 C T GRIN2C Missense_Mutation p.D766N 0.21 tolerated(0.3) benign(0.168) TCGA-EE-A181-06 17 73725388 73725388 C T ITGB4 Silent p.F203F 0.55 TCGA-EE-A181-06 17 73808213 73808213 C T UNK Missense_Mutation p.T112I 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 17 7386304 7386304 G A SLC35G6 Missense_Mutation p.G334E 0.26 tolerated(0.12) benign(0.006) TCGA-EE-A181-06 17 7386305 7386305 G A SLC35G6 Silent p.G334G 0.25 TCGA-EE-A181-06 17 74005104 74005104 G A EVPL Silent p.S1394S 0.46 TCGA-EE-A181-06 17 74084899 74084899 G A EXOC7 Silent p.L436L 0.21 TCGA-EE-A181-06 17 74084900 74084900 G A EXOC7 Silent p.I435I 0.22 TCGA-EE-A181-06 17 74276755 74276755 G A QRICH2 Silent p.L1315L 0.14 TCGA-EE-A181-06 17 74679935 74679935 G A MXRA7 Intron 0.58 TCGA-EE-A181-06 17 75196570 75196570 C T SEC14L1 Missense_Mutation p.P275L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 17 7578502 7578502 A T TP53 Missense_Mutation p.V143E 0.71 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 76046630 76046630 C T TNRC6C Missense_Mutation p.S496F 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A181-06 17 7605007 7605007 C T WRAP53 Silent p.F285F 0.19 TCGA-EE-A181-06 17 76492064 76492064 G A DNAH17 Silent p.F1918F 0.18 TCGA-EE-A181-06 17 7680802 7680802 G A DNAH2 Silent p.G1699G 0.68 TCGA-EE-A181-06 17 7691218 7691218 C T DNAH2 Missense_Mutation p.S2215F 0.17 probably_damaging(0.998) TCGA-EE-A181-06 17 76993341 76993341 C T CANT1 Missense_Mutation p.E122K 0.32 tolerated(0.73) benign(0.014) TCGA-EE-A181-06 17 7727910 7727910 G A DNAH2 Silent p.L3906L 0.23 TCGA-EE-A181-06 17 7753164 7753164 C T KDM6B Nonsense_Mutation p.R1156* 0.43 TCGA-EE-A181-06 17 78058726 78058726 G A CCDC40 Missense_Mutation p.R725K 0.34 tolerated(0.13) possibly_damaging(0.677) TCGA-EE-A181-06 17 78069143 78069143 A C CCDC40 Missense_Mutation p.T972P 0.25 deleterious(0.05) benign(0.222) TCGA-EE-A181-06 17 7811272 7811272 G A CHD3 Missense_Mutation p.G1755E 0.14 probably_damaging(0.931) TCGA-EE-A181-06 17 78247198 78247198 C T RNF213 Nonsense_Mutation p.Q86* 0.45 TCGA-EE-A181-06 17 78321863 78321863 C T RNF213 Missense_Mutation p.T3243M 0.09 possibly_damaging(0.891) TCGA-EE-A181-06 17 79058642 79058642 C T BAIAP2 Silent p.L76L 0.15 TCGA-EE-A181-06 17 79225184 79225184 G A SLC38A10 Intron 0.48 TCGA-EE-A181-06 17 79409825 79409825 C T RP11-1055B8.7 Missense_Mutation p.P484S 0.44 probably_damaging(0.998) TCGA-EE-A181-06 17 79479287 79479287 G A ACTG1 Missense_Mutation p.P32S 0.46 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-EE-A181-06 17 80047516 80047516 C T FASN Missense_Mutation p.G653R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 17 80047517 80047517 C T FASN Silent p.S652S 0.40 TCGA-EE-A181-06 17 8045721 8045721 C T PER1 Silent p.E1105E 0.19 TCGA-EE-A181-06 17 80540674 80540674 C T FOXK2 Nonsense_Mutation p.Q323* 0.40 TCGA-EE-A181-06 18 13752422 13752422 C T RNMT Missense_Mutation p.P452L 0.11 deleterious(0.04) possibly_damaging(0.838) TCGA-EE-A181-06 18 13826743 13826743 G A MC5R 3'UTR 0.14 TCGA-EE-A181-06 18 13884913 13884913 G A MC2R Missense_Mutation p.S202F 0.55 tolerated(0.7) possibly_damaging(0.819) TCGA-EE-A181-06 18 14478132 14478132 G A CXADRP3 RNA 0.67 TCGA-EE-A181-06 18 14537808 14537808 T C POTEC Missense_Mutation p.K268E 0.09 tolerated(0.06) benign(0.358) TCGA-EE-A181-06 18 14851614 14851614 A C ANKRD30B Missense_Mutation p.H1105P 0.23 deleterious(0.01) benign(0.132) TCGA-EE-A181-06 18 19995710 19995710 G A CTAGE1 Missense_Mutation p.P689S 0.16 tolerated(0.06) benign(0.382) TCGA-EE-A181-06 18 19995711 19995711 G A CTAGE1 Silent p.F688F 0.16 TCGA-EE-A181-06 18 19996547 19996547 C T CTAGE1 Missense_Mutation p.E410K 0.12 deleterious(0.02) benign(0.17) TCGA-EE-A181-06 18 21044193 21044193 C T RIOK3 Nonsense_Mutation p.R117* 0.14 TCGA-EE-A181-06 18 21357535 21357535 C T LAMA3 Missense_Mutation p.P474S 0.65 benign(0.023) TCGA-EE-A181-06 18 21396436 21396436 G A LAMA3 Missense_Mutation p.G711E 0.16 probably_damaging(1) TCGA-EE-A181-06 18 21495344 21495344 A T LAMA3 Missense_Mutation p.K2579I 0.12 benign(0.197) TCGA-EE-A181-06 18 21526172 21526172 G A LAMA3 Missense_Mutation p.G3092E 0.10 probably_damaging(0.989) TCGA-EE-A181-06 18 21649137 21649137 C T TTC39C Missense_Mutation p.S121F 0.13 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A181-06 18 23713987 23713987 C T PSMA8 Nonsense_Mutation p.Q20* 0.41 TCGA-EE-A181-06 18 23772280 23772280 C T PSMA8 Intron 0.22 TCGA-EE-A181-06 18 25585831 25585831 G A CDH2 Missense_Mutation p.P277S 0.65 tolerated(0.69) benign(0.213) TCGA-EE-A181-06 18 28609486 28609486 A T DSC3 Missense_Mutation p.F155I 0.14 tolerated(0.13) possibly_damaging(0.633) TCGA-EE-A181-06 18 28739460 28739460 T A DSC1 Missense_Mutation p.K32N 0.60 tolerated(0.17) possibly_damaging(0.762) TCGA-EE-A181-06 18 2885025 2885025 G A EMILIN2 Nonsense_Mutation p.W107* 0.22 TCGA-EE-A181-06 18 28898230 28898230 C T DSG1 5'UTR 0.75 TCGA-EE-A181-06 18 28918397 28918397 G A DSG1 Missense_Mutation p.G462E 0.10 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 18 28926100 28926100 C T DSG1 Missense_Mutation p.S680F 0.33 deleterious(0) possibly_damaging(0.877) TCGA-EE-A181-06 18 29049253 29049253 C T DSG3 Missense_Mutation p.S613L 0.19 tolerated(0.14) benign(0.001) TCGA-EE-A181-06 18 29054139 29054139 G A DSG3 Missense_Mutation p.M719I 0.25 tolerated(0.4) benign(0.009) TCGA-EE-A181-06 18 29225354 29225355 - C B4GALT6 Frame_Shift_Ins p.H146Sfs*8 0.17 TCGA-EE-A181-06 18 29339732 29339732 C T SLC25A52 Silent p.%3D 0.24 TCGA-EE-A181-06 18 29339985 29339985 C T SLC25A52 Missense_Mutation p.D224N 0.18 tolerated(0.14) probably_damaging(0.965) TCGA-EE-A181-06 18 29340695 29340695 G A SLC25A52 5'UTR 0.20 TCGA-EE-A181-06 18 30936296 30936296 A T CCDC178 Missense_Mutation p.F121L 0.38 tolerated(0.92) benign(0.007) TCGA-EE-A181-06 18 31537309 31537309 T G NOL4 Missense_Mutation p.K470T 0.20 deleterious(0) benign(0.099) TCGA-EE-A181-06 18 33060428 33060428 G A INO80C Missense_Mutation p.P122S 0.22 tolerated(0.07) possibly_damaging(0.858) TCGA-EE-A181-06 18 33606972 33606972 T A RPRD1A Missense_Mutation p.N227I 0.22 deleterious(0) probably_damaging(0.914) TCGA-EE-A181-06 18 33706700 33706700 G A SLC39A6 Missense_Mutation p.H91Y 0.21 tolerated(0.13) benign(0.328) TCGA-EE-A181-06 18 34335185 34335185 C T FHOD3 Missense_Mutation p.R1271C 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 18 40323638 40323638 A C RIT2 Silent p.G158G 0.11 TCGA-EE-A181-06 18 43204771 43204771 G A SLC14A2 Missense_Mutation p.E48K 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.643) TCGA-EE-A181-06 18 47108779 47108779 G A LIPG Missense_Mutation p.G362R 0.22 tolerated(0.13) benign(0.061) TCGA-EE-A181-06 18 47488716 47488716 C T MYO5B Missense_Mutation p.D489N 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A181-06 18 47777208 47777208 C T CCDC11 Missense_Mutation p.E306K 0.15 deleterious(0) possibly_damaging(0.756) TCGA-EE-A181-06 18 48327874 48327874 C T MRO Missense_Mutation p.E158K 0.12 deleterious(0.04) probably_damaging(0.967) TCGA-EE-A181-06 18 50278642 50278642 C T DCC Missense_Mutation p.H104Y 0.17 deleterious(0) probably_damaging(0.936) TCGA-EE-A181-06 18 50936960 50936960 G A DCC Missense_Mutation p.R1025Q 0.17 deleterious(0) possibly_damaging(0.903) TCGA-EE-A181-06 18 50985602 50985602 G A DCC Silent p.K1131K 0.65 TCGA-EE-A181-06 18 51858172 51858172 G A STARD6 Nonsense_Mutation p.R109* 0.22 TCGA-EE-A181-06 18 5423386 5423386 A G EPB41L3 Silent p.L444L 0.21 TCGA-EE-A181-06 18 5433499 5433499 G A EPB41L3 Missense_Mutation p.S294L 0.11 deleterious(0) probably_damaging(0.942) TCGA-EE-A181-06 18 55269716 55269716 G A NARS Silent p.V462V 0.66 TCGA-EE-A181-06 18 55328481 55328481 C T ATP8B1 Missense_Mutation p.D878N 0.15 deleterious(0.04) benign(0.015) TCGA-EE-A181-06 18 55352331 55352331 G A ATP8B1 Silent p.A482A 0.15 TCGA-EE-A181-06 18 56203325 56203325 C G ALPK2 Missense_Mutation p.G1365A 0.21 tolerated(0.68) benign(0.03) TCGA-EE-A181-06 18 56205126 56205126 G A ALPK2 Missense_Mutation p.R765C 0.75 tolerated(0.11) benign(0.443) TCGA-EE-A181-06 18 56401549 56401549 G A MALT1 Missense_Mutation p.D471N 0.68 deleterious(0.02) probably_damaging(1) TCGA-EE-A181-06 18 580874 580874 G A CETN1 Missense_Mutation p.E156K 0.21 deleterious(0.04) probably_damaging(0.941) TCGA-EE-A181-06 18 60237405 60237405 C T ZCCHC2 Missense_Mutation p.P639L 0.66 deleterious(0) probably_damaging(0.962) TCGA-EE-A181-06 18 61306990 61306990 G A SERPINB4 Missense_Mutation p.P164S 0.22 tolerated(0.11) possibly_damaging(0.466) TCGA-EE-A181-06 18 61383355 61383355 G A SERPINB11 Silent p.T148T 0.24 TCGA-EE-A181-06 18 6213171 6213171 C T L3MBTL4 Missense_Mutation p.D320N 0.10 deleterious(0) possibly_damaging(0.781) TCGA-EE-A181-06 18 65178404 65178404 G A DSEL Missense_Mutation p.P1158S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 18 65179113 65179113 G A DSEL Silent p.I921I 0.62 TCGA-EE-A181-06 18 66504355 66504355 G A CCDC102B Missense_Mutation p.E119K 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 18 66564615 66564615 C T CCDC102B Nonsense_Mutation p.Q405* 0.16 TCGA-EE-A181-06 18 67563141 67563141 G A CD226 Missense_Mutation p.L175F 0.20 tolerated(0.09) probably_damaging(0.917) TCGA-EE-A181-06 18 6999489 6999489 C T LAMA1 Missense_Mutation p.D1540N 0.22 deleterious(0.04) benign(0.066) TCGA-EE-A181-06 18 71740773 71740773 C T FBXO15 Missense_Mutation p.E486K 0.18 tolerated(0.45) benign(0.096) TCGA-EE-A181-06 18 7231170 7231170 G C LRRC30 Missense_Mutation p.D12H 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.643) TCGA-EE-A181-06 18 7231711 7231711 A C LRRC30 Missense_Mutation p.H192P 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 18 72589276 72589276 C T ZNF407 Silent p.F1667F 0.16 TCGA-EE-A181-06 18 72632573 72632573 C T ZNF407 Missense_Mutation p.P1785S 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A181-06 18 77170516 77170516 C T NFATC1 Missense_Mutation p.P68S 0.21 tolerated(0.51) benign(0.066) TCGA-EE-A181-06 18 77170517 77170517 C T NFATC1 Missense_Mutation p.P68L 0.20 tolerated(0.7) benign(0.003) TCGA-EE-A181-06 18 905484 905484 T C ADCYAP1 Missense_Mutation p.F33L 0.25 tolerated(0.28) benign(0.036) TCGA-EE-A181-06 18 9533713 9533713 C T RALBP1 Silent p.H530H 0.44 TCGA-EE-A181-06 19 10077065 10077065 C T COL5A3 Silent p.R1569R 0.25 TCGA-EE-A181-06 19 10157492 10157492 T C C3P1 RNA 0.17 TCGA-EE-A181-06 19 10169621 10169621 G A C3P1 RNA 0.20 TCGA-EE-A181-06 19 10221728 10221728 C T PPAN Intron 0.32 TCGA-EE-A181-06 19 10229351 10229351 C T EIF3G Missense_Mutation p.R98K 0.22 tolerated(0.45) benign(0.006) TCGA-EE-A181-06 19 1036215 1036215 G A CNN2 Missense_Mutation p.M159I 0.20 tolerated(0.11) benign(0.014) TCGA-EE-A181-06 19 10561571 10561571 A G PDE4A Missense_Mutation p.E246G 0.38 deleterious(0.01) possibly_damaging(0.447) TCGA-EE-A181-06 19 11152195 11152195 G C SMARCA4 Missense_Mutation p.K1461N 0.38 possibly_damaging(0.462) TCGA-EE-A181-06 19 1127726 1127726 G A SBNO2 Silent p.I106I 0.24 TCGA-EE-A181-06 19 11833312 11833312 G A ZNF823 Missense_Mutation p.S346L 0.26 tolerated(0.08) possibly_damaging(0.685) TCGA-EE-A181-06 19 12256823 12256823 T C ZNF625 Silent p.K136K 0.16 TCGA-EE-A181-06 19 12433461 12433461 G A ZNF563 Missense_Mutation p.P23L 0.45 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 19 12461221 12461221 C T ZNF442 Missense_Mutation p.R393Q 0.12 tolerated(0.52) benign(0.314) TCGA-EE-A181-06 19 12574931 12574931 G A ZNF709 Missense_Mutation p.S602F 0.23 tolerated(0.5) benign(0.057) TCGA-EE-A181-06 19 13566004 13566004 C T CACNA1A Missense_Mutation p.A106T 0.17 possibly_damaging(0.682) TCGA-EE-A181-06 19 13883066 13883066 G A MRI1 Missense_Mutation p.D361N 0.35 tolerated(0.57) benign(0) TCGA-EE-A181-06 19 1390905 1390905 C G NDUFS7 Missense_Mutation p.C88W 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A181-06 19 13915869 13915869 C T ZSWIM4 Missense_Mutation p.L207F 0.20 deleterious(0) benign(0.001) TCGA-EE-A181-06 19 14749089 14749089 G A EMR3 Silent p.L438L 0.19 TCGA-EE-A181-06 19 14877890 14877890 G A EMR2 Silent p.L129L 0.11 TCGA-EE-A181-06 19 14991789 14991789 A C OR7A17 Missense_Mutation p.C127G 0.20 deleterious_low_confidence(0) benign(0.32) TCGA-EE-A181-06 19 15064958 15064958 G T SLC1A6 Silent p.I451I 0.10 TCGA-EE-A181-06 19 15547765 15547765 G A WIZ Silent p.T127T 0.18 TCGA-EE-A181-06 19 15648209 15648209 C T CYP4F22 Silent p.F135F 0.39 TCGA-EE-A181-06 19 15852289 15852289 C T OR10H3 Silent p.F29F 0.15 TCGA-EE-A181-06 19 16038278 16038278 T C CYP4F11 Missense_Mutation p.K120R 0.14 deleterious(0) possibly_damaging(0.782) TCGA-EE-A181-06 19 16059904 16059904 C T OR10H4 Silent p.F29F 0.17 TCGA-EE-A181-06 19 1611643 1611643 G A TCF3 3'UTR 0.47 TCGA-EE-A181-06 19 16799183 16799183 G A TMEM38A 3'UTR 0.46 TCGA-EE-A181-06 19 16918718 16918718 G A NWD1 Missense_Mutation p.S1353N 0.19 tolerated(0.11) benign(0.043) TCGA-EE-A181-06 19 17039896 17039896 G A CPAMD8 Silent p.I1047I 0.27 TCGA-EE-A181-06 19 17104366 17104366 C T CPAMD8 Missense_Mutation p.A423T 0.15 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 19 17213280 17213280 C T MYO9B Silent p.F251F 0.35 TCGA-EE-A181-06 19 17450299 17450299 G A GTPBP3 Missense_Mutation p.E321K 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 19 17889664 17889664 C T FCHO1 Missense_Mutation p.P533L 0.35 tolerated(0.18) benign(0.019) TCGA-EE-A181-06 19 18709599 18709599 G A CRLF1 Silent p.S170S 0.21 TCGA-EE-A181-06 19 19032556 19032556 G A DDX49 Missense_Mutation p.M108I 0.23 tolerated(0.09) benign(0.063) TCGA-EE-A181-06 19 19032557 19032557 G A DDX49 Missense_Mutation p.D109N 0.23 deleterious(0.03) probably_damaging(0.958) TCGA-EE-A181-06 19 19655346 19655346 G A CILP2 Silent p.R664R 0.25 TCGA-EE-A181-06 19 19655943 19655943 C T CILP2 Silent p.L863L 0.27 TCGA-EE-A181-06 19 19745506 19745506 C T GMIP Missense_Mutation p.E632K 0.16 deleterious(0.05) benign(0.249) TCGA-EE-A181-06 19 19746466 19746466 C T GMIP Silent p.E464E 0.17 TCGA-EE-A181-06 19 19766382 19766382 G A ATP13A1 Missense_Mutation p.L451F 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 19 20002943 20002943 C T ZNF253 Missense_Mutation p.P296L 0.14 tolerated(0.18) benign(0.03) TCGA-EE-A181-06 19 2076855 2076855 G A MOB3A Silent p.F193F 0.18 TCGA-EE-A181-06 19 2115325 2115325 C G AP3D1 Missense_Mutation p.E748Q 0.28 tolerated(0.08) benign(0.099) TCGA-EE-A181-06 19 21476007 21476007 G A ZNF708 3'UTR 0.14 TCGA-EE-A181-06 19 21605951 21605951 C T ZNF493 Missense_Mutation p.H164Y 0.37 tolerated(0.28) benign(0.021) TCGA-EE-A181-06 19 22156927 22156927 A G ZNF208 Silent p.H303H 0.15 TCGA-EE-A181-06 19 22156932 22156932 T G ZNF208 Missense_Mutation p.T302P 0.15 tolerated(0.26) benign(0.346) TCGA-EE-A181-06 19 22363787 22363787 C T ZNF676 Silent p.K244K 0.21 TCGA-EE-A181-06 19 2255218 2255218 C T JSRP1 Silent p.E32E 0.28 TCGA-EE-A181-06 19 22574407 22574407 T C ZNF98 Missense_Mutation p.K544E 0.25 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A181-06 19 22940941 22940941 C T ZNF99 Silent p.E590E 0.21 TCGA-EE-A181-06 19 23159413 23159413 G A ZNF728 Silent p.I242I 0.24 TCGA-EE-A181-06 19 2833847 2833847 C T ZNF554 Missense_Mutation p.S205F 0.17 tolerated(0.71) benign(0) TCGA-EE-A181-06 19 2877835 2877835 G A ZNF556 Silent p.G293G 0.31 TCGA-EE-A181-06 19 2878022 2878022 C G ZNF556 Missense_Mutation p.R356G 0.48 tolerated(0.24) benign(0) TCGA-EE-A181-06 19 2916093 2916093 A C ZNF57 Missense_Mutation p.K50Q 0.14 deleterious(0.01) benign(0.009) TCGA-EE-A181-06 19 2987234 2987234 G A TLE6 Missense_Mutation p.R180K 0.25 tolerated(0.17) benign(0.107) TCGA-EE-A181-06 19 30935412 30935412 C T ZNF536 Missense_Mutation p.L315F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 19 34685389 34685389 C T LSM14A Missense_Mutation p.S43F 0.53 deleterious(0) possibly_damaging(0.681) TCGA-EE-A181-06 19 34712526 34712526 C T LSM14A Silent p.F417F 0.21 TCGA-EE-A181-06 19 35556486 35556486 C T HPN Silent p.I317I 0.27 TCGA-EE-A181-06 19 35832700 35832700 C A CD22 Missense_Mutation p.P623T 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A181-06 19 35832701 35832701 C G CD22 Missense_Mutation p.P623R 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 19 35832865 35832865 T C CD22 Missense_Mutation p.Y678H 0.11 deleterious(0) possibly_damaging(0.54) TCGA-EE-A181-06 19 3586562 3586562 G A GIPC3 Missense_Mutation p.E99K 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A181-06 19 36234992 36234992 A G U2AF1L4 Missense_Mutation p.F96L 0.22 deleterious(0) possibly_damaging(0.498) TCGA-EE-A181-06 19 36297455 36297455 C T PRODH2 Missense_Mutation p.R369K 0.17 tolerated(0.18) benign(0.021) TCGA-EE-A181-06 19 36339028 36339028 C T NPHS1 Missense_Mutation p.G452D 0.30 tolerated(0.94) benign(0.016) TCGA-EE-A181-06 19 36557193 36557193 T G WDR62 Missense_Mutation p.V142G 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 19 36832073 36832073 G A ZFP14 Missense_Mutation p.H219Y 0.19 deleterious(0.01) benign(0.022) TCGA-EE-A181-06 19 37005502 37005502 G A ZNF260 Silent p.I213I 0.23 TCGA-EE-A181-06 19 3735609 3735609 C T TJP3 Silent p.T353T 0.47 TCGA-EE-A181-06 19 37441016 37441016 C G ZNF568 Missense_Mutation p.L321V 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 19 37677573 37677573 C T ZNF585B Missense_Mutation p.R289Q 0.21 tolerated(1) benign(0.019) TCGA-EE-A181-06 19 37677885 37677885 G A ZNF585B Missense_Mutation p.P185L 0.23 tolerated(0.05) possibly_damaging(0.621) TCGA-EE-A181-06 19 38229581 38229581 G A ZNF573 Missense_Mutation p.H604Y 0.18 deleterious(0) probably_damaging(0.974) TCGA-EE-A181-06 19 38976641 38976641 C T RYR1 Silent p.F1782F 0.17 TCGA-EE-A181-06 19 39336546 39336546 C T HNRNPL Missense_Mutation p.V191M 0.24 tolerated(0.11) possibly_damaging(0.721) TCGA-EE-A181-06 19 39589214 39589214 C T PAPL Missense_Mutation p.P80S 0.24 tolerated(0.72) benign(0.012) TCGA-EE-A181-06 19 39789114 39789114 G A IFNL1 Silent p.G187G 0.20 TCGA-EE-A181-06 19 40420093 40420093 C T FCGBP Silent p.R967R 0.42 TCGA-EE-A181-06 19 40424009 40424009 C T FCGBP Missense_Mutation p.V732I 0.15 benign(0.401) TCGA-EE-A181-06 19 40430384 40430384 C T FCGBP Missense_Mutation p.R520Q 0.20 probably_damaging(0.999) TCGA-EE-A181-06 19 40520528 40520528 C T ZNF546 Missense_Mutation p.R451C 0.10 tolerated(0.15) possibly_damaging(0.898) TCGA-EE-A181-06 19 40581652 40581652 G A ZNF780A Missense_Mutation p.L234F 0.26 tolerated(0.69) benign(0.002) TCGA-EE-A181-06 19 40900064 40900064 G A PRX Missense_Mutation p.P1399S 0.32 tolerated(0.52) possibly_damaging(0.803) TCGA-EE-A181-06 19 41071430 41071430 G A SPTBN4 Missense_Mutation p.R2006Q 0.39 tolerated(0.16) benign(0.207) TCGA-EE-A181-06 19 42092884 42092884 T A CEACAM21 3'UTR 0.26 TCGA-EE-A181-06 19 42260663 42260663 G A CEACAM6 Missense_Mutation p.D74N 0.16 tolerated(0.11) possibly_damaging(0.791) TCGA-EE-A181-06 19 42584034 42584034 C T ZNF574 Missense_Mutation p.P426S 0.13 tolerated(0.48) benign(0.001) TCGA-EE-A181-06 19 42796853 42796853 C T CIC Missense_Mutation p.S1104F 0.27 possibly_damaging(0.485) TCGA-EE-A181-06 19 42848597 42848597 C T MEGF8 Missense_Mutation p.P598L 0.15 tolerated(0.22) benign(0.001) TCGA-EE-A181-06 19 43023216 43023216 C T CEACAM1 Missense_Mutation p.G377D 0.19 tolerated(1) benign(0.007) TCGA-EE-A181-06 19 43242876 43242876 G C PSG3 Missense_Mutation p.L144V 0.43 tolerated(0.55) benign(0.006) TCGA-EE-A181-06 19 43258413 43258413 C T PSG8 3'UTR 0.13 TCGA-EE-A181-06 19 43343883 43343883 G A PSG10P 3'Flank 0.17 TCGA-EE-A181-06 19 43383729 43383729 C T PSG1 Missense_Mutation p.G2E 0.44 tolerated(0.15) benign(0.089) TCGA-EE-A181-06 19 43420350 43420350 G A PSG6 Silent p.S118S 0.44 TCGA-EE-A181-06 19 44351947 44351947 T C ZNF283 Silent p.T398T 0.14 TCGA-EE-A181-06 19 44514591 44514591 C T ZNF230 Missense_Mutation p.H134Y 0.16 tolerated(0.1) possibly_damaging(0.696) TCGA-EE-A181-06 19 44515568 44515568 G C ZNF230 Missense_Mutation p.R459S 0.27 tolerated(0.45) benign(0.015) TCGA-EE-A181-06 19 44536030 44536030 C T ZNF222 Missense_Mutation p.S108F 0.26 tolerated(0.2) benign(0.059) TCGA-EE-A181-06 19 44536174 44536174 C T ZNF222 Missense_Mutation p.P156L 0.11 tolerated(0.13) benign(0.02) TCGA-EE-A181-06 19 44570825 44570825 C T ZNF223 Missense_Mutation p.H282Y 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 19 44792819 44792819 G A ZNF235 Missense_Mutation p.H257Y 0.24 tolerated(0.22) benign(0.001) TCGA-EE-A181-06 19 44890982 44890982 C T ZNF285 Silent p.Q475Q 0.25 TCGA-EE-A181-06 19 44980699 44980699 C T ZNF180 Missense_Mutation p.G667R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 19 45024608 45024608 G A CEACAM20 RNA 0.14 TCGA-EE-A181-06 19 45028250 45028250 C G CEACAM20 RNA 0.19 TCGA-EE-A181-06 19 45033495 45033495 C T CEACAM20 RNA 0.12 TCGA-EE-A181-06 19 45186758 45186758 C T CEACAM19 Missense_Mutation p.S300F 0.24 deleterious(0) probably_damaging(0.96) TCGA-EE-A181-06 19 4523637 4523637 C T PLIN5 Missense_Mutation p.G432E 0.20 deleterious_low_confidence(0.05) benign(0.011) TCGA-EE-A181-06 19 45860772 45860772 G A ERCC2 Missense_Mutation p.P446L 0.10 deleterious(0) benign(0.167) TCGA-EE-A181-06 19 45916912 45916912 G A ERCC1 Missense_Mutation p.P289L 0.21 tolerated_low_confidence(1) benign(0) TCGA-EE-A181-06 19 45976161 45976161 C T FOSB Missense_Mutation p.S303L 0.18 tolerated(0.09) possibly_damaging(0.706) TCGA-EE-A181-06 19 46094750 46094750 G A GPR4 Silent p.F125F 0.25 TCGA-EE-A181-06 19 46215700 46215700 G A FBXO46 Missense_Mutation p.P352S 0.38 tolerated(0.79) probably_damaging(0.932) TCGA-EE-A181-06 19 46215701 46215701 G A FBXO46 Silent p.P351P 0.43 TCGA-EE-A181-06 19 46345590 46345590 G A SYMPK Silent p.I335I 0.18 TCGA-EE-A181-06 19 46393958 46393958 G A MYPOP Missense_Mutation p.P375S 0.33 tolerated_low_confidence(0.39) benign(0.118) TCGA-EE-A181-06 19 46974208 46974208 C T PNMAL1 Missense_Mutation p.G29S 0.22 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A181-06 19 47996236 47996236 G A NAPA Silent p.A181A 0.21 TCGA-EE-A181-06 19 48343113 48343113 C T CRX Silent p.P263P 0.15 TCGA-EE-A181-06 19 48619177 48619177 G A LIG1 Nonsense_Mutation p.R877* 0.35 TCGA-EE-A181-06 19 49243457 49243457 G A RASIP1 Missense_Mutation p.P28L 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 19 49362909 49362909 G A PLEKHA4 Missense_Mutation p.P170L 0.18 deleterious(0.02) benign(0.075) TCGA-EE-A181-06 19 49448199 49448199 C G DHDH 3'UTR 0.35 TCGA-EE-A181-06 19 49657866 49657866 C T HRC Missense_Mutation p.G210E 0.40 deleterious(0.01) possibly_damaging(0.769) TCGA-EE-A181-06 19 49793384 49793384 G A SLC6A16 Missense_Mutation p.S736F 0.19 deleterious_low_confidence(0) benign(0.354) TCGA-EE-A181-06 19 50058978 50058978 A C NOSIP 3'UTR 0.14 TCGA-EE-A181-06 19 50060140 50060140 C T NOSIP Missense_Mutation p.E177K 0.25 tolerated(0.71) benign(0.009) TCGA-EE-A181-06 19 50098347 50098347 C T PRR12 Missense_Mutation p.S252F 0.30 possibly_damaging(0.683) TCGA-EE-A181-06 19 50962496 50962496 G A MYBPC2 Silent p.G908G 0.67 TCGA-EE-A181-06 19 51323257 51323257 G A KLK1 Silent p.L177L 0.23 TCGA-EE-A181-06 19 51411946 51411946 A G KLK4 Silent p.L122L 0.13 TCGA-EE-A181-06 19 51412047 51412047 G A KLK4 Missense_Mutation p.A88V 0.38 tolerated(0.14) benign(0.221) TCGA-EE-A181-06 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.16 tolerated(0.21) benign(0.065) TCGA-EE-A181-06 19 51631298 51631298 T C SIGLEC9 Splice_Site p.X369_splice 0.20 TCGA-EE-A181-06 19 51633162 51633162 A G SIGLEC9 Intron 0.12 TCGA-EE-A181-06 19 51914431 51914431 G A SIGLEC10 Silent p.F672F 0.17 TCGA-EE-A181-06 19 52000216 52000216 C T SIGLEC12 Missense_Mutation p.R506K 0.19 tolerated(0.13) benign(0.085) TCGA-EE-A181-06 19 52002912 52002912 C T SIGLEC12 Silent p.R289R 0.30 TCGA-EE-A181-06 19 52327484 52327484 C T FPR3 Silent p.F161F 0.23 TCGA-EE-A181-06 19 52469189 52469189 G A ZNF350 Missense_Mutation p.H173Y 0.28 tolerated(0.35) benign(0.009) TCGA-EE-A181-06 19 52918991 52918991 C T ZNF528 Missense_Mutation p.P296S 0.15 deleterious(0.04) probably_damaging(0.968) TCGA-EE-A181-06 19 52918992 52918992 C T ZNF528 Missense_Mutation p.P296L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 19 52941692 52941692 G A ZNF534 Missense_Mutation p.D340N 0.38 deleterious(0.01) benign(0.154) TCGA-EE-A181-06 19 53085577 53085577 G A ZNF701 Missense_Mutation p.E155K 0.13 tolerated(0.16) benign(0.047) TCGA-EE-A181-06 19 53085911 53085911 C T ZNF701 Missense_Mutation p.S266L 0.15 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A181-06 19 53217299 53217299 C A ZNF611 Missense_Mutation p.M53I 0.12 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A181-06 19 53473687 53473687 G A ZNF702P RNA 0.23 TCGA-EE-A181-06 19 53669145 53669145 G A ZNF665 Missense_Mutation p.H200Y 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A181-06 19 53761937 53761937 G A VN1R2 Silent p.G103G 0.40 TCGA-EE-A181-06 19 53958609 53958609 C T ZNF761 RNA 0.13 TCGA-EE-A181-06 19 54080038 54080038 G A ZNF331 Missense_Mutation p.R75K 0.25 tolerated(1) benign(0) TCGA-EE-A181-06 19 54140039 54140039 C T DPRX Nonsense_Mutation p.R125* 0.24 TCGA-EE-A181-06 19 54200848 54200848 C T MIR525 RNA 0.57 TCGA-EE-A181-06 19 54201686 54201686 G A MIR523 RNA 0.40 TCGA-EE-A181-06 19 54313084 54313084 G A NLRP12 Missense_Mutation p.S610F 0.13 tolerated(0.16) possibly_damaging(0.794) TCGA-EE-A181-06 19 54394986 54394986 G A PRKCG Silent p.V196V 0.16 TCGA-EE-A181-06 19 54406348 54406348 G A PRKCG Missense_Mutation p.G533R 0.21 deleterious(0) probably_damaging(0.982) TCGA-EE-A181-06 19 54803129 54803129 G A LILRA3 Missense_Mutation p.S183F 0.30 deleterious(0.03) benign(0.035) TCGA-EE-A181-06 19 54868146 54868146 G A LAIR1 Silent p.L179L 0.16 TCGA-EE-A181-06 19 55019221 55019221 G A LAIR2 Silent p.R62R 0.17 TCGA-EE-A181-06 19 55142956 55142956 C T LILRB1 Missense_Mutation p.L26F 0.17 tolerated(0.07) benign(0.014) TCGA-EE-A181-06 19 55285018 55285018 G A KIR2DL1 Missense_Mutation p.G102S 0.19 tolerated(0.05) possibly_damaging(0.453) TCGA-EE-A181-06 19 55324663 55324663 C T KIR2DL4 Intron 0.26 TCGA-EE-A181-06 19 55329824 55329824 G A KIR3DL1 Missense_Mutation p.G42E 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A181-06 19 55351125 55351125 C T KIR2DS4 Nonsense_Mutation p.R205* 0.22 TCGA-EE-A181-06 19 55495044 55495044 G A NLRP2 Missense_Mutation p.E660K 0.15 tolerated(0.1) benign(0.003) TCGA-EE-A181-06 19 55508692 55508692 G A NLRP2 Missense_Mutation p.G963R 0.11 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A181-06 19 55559837 55559837 G A RDH13 Missense_Mutation p.S173L 0.11 deleterious(0) probably_damaging(0.924) TCGA-EE-A181-06 19 56104030 56104030 G A FIZ1 Missense_Mutation p.P426L 0.19 tolerated(0.09) probably_damaging(0.931) TCGA-EE-A181-06 19 56244618 56244618 G A NLRP9 Silent p.I193I 0.13 TCGA-EE-A181-06 19 56369540 56369540 C T NLRP4 Silent p.L261L 0.21 TCGA-EE-A181-06 19 56369627 56369627 C T NLRP4 Nonsense_Mutation p.Q290* 0.12 TCGA-EE-A181-06 19 56392963 56392963 A G NLRP4 3'UTR 0.18 TCGA-EE-A181-06 19 56392997 56392997 G A NLRP4 3'UTR 0.25 TCGA-EE-A181-06 19 56515282 56515282 C T NLRP5 Missense_Mutation p.S88F 0.22 tolerated(0.16) possibly_damaging(0.491) TCGA-EE-A181-06 19 56520182 56520182 G A NLRP5 Silent p.T157T 0.65 TCGA-EE-A181-06 19 56549468 56549468 C T NLRP5 Missense_Mutation p.S898F 0.20 tolerated(0.5) benign(0.432) TCGA-EE-A181-06 19 56561926 56561926 G A NLRP5 Missense_Mutation p.E1034K 0.24 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A181-06 19 56572901 56572901 G A NLRP5 3'UTR 0.15 TCGA-EE-A181-06 19 56572935 56572935 G A NLRP5 3'UTR 0.14 TCGA-EE-A181-06 19 56694574 56694574 G A GALP Silent p.E96E 0.21 TCGA-EE-A181-06 19 56701677 56701677 C T ZSCAN5B Missense_Mutation p.G336D 0.21 tolerated(0.06) benign(0.179) TCGA-EE-A181-06 19 56734019 56734019 T A ZSCAN5A Missense_Mutation p.E227V 0.25 tolerated(0.08) benign(0.002) TCGA-EE-A181-06 19 56734020 56734020 C T ZSCAN5A Missense_Mutation p.E227K 0.24 tolerated(0.13) benign(0.263) TCGA-EE-A181-06 19 56896043 56896043 A G ZNF582 Missense_Mutation p.V248A 0.16 deleterious(0) probably_damaging(0.973) TCGA-EE-A181-06 19 5748226 5748226 C T CATSPERD Silent p.S288S 0.13 TCGA-EE-A181-06 19 57640177 57640177 G A USP29 Missense_Mutation p.G45E 0.12 tolerated(0.2) benign(0.052) TCGA-EE-A181-06 19 57640373 57640373 C T USP29 Silent p.P110P 0.42 TCGA-EE-A181-06 19 58050249 58050249 A G ZNF549 Missense_Mutation p.Y626C 0.34 deleterious(0.04) benign(0.023) TCGA-EE-A181-06 19 58190018 58190018 C T ZSCAN4 Silent p.F349F 0.29 TCGA-EE-A181-06 19 58291138 58291138 C T ZNF586 Missense_Mutation p.H395Y 0.11 deleterious(0) probably_damaging(0.909) TCGA-EE-A181-06 19 58490297 58490297 A T ZNF606 Missense_Mutation p.I584N 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A181-06 19 58490541 58490541 G A ZNF606 Nonsense_Mutation p.Q503* 0.26 TCGA-EE-A181-06 19 58565251 58565251 G A ZSCAN1 Silent p.R353R 0.64 TCGA-EE-A181-06 19 58578102 58578102 C T ZNF135 Missense_Mutation p.L108F 0.09 tolerated(0.7) probably_damaging(0.934) TCGA-EE-A181-06 19 59028308 59028308 G A ZBTB45 Missense_Mutation p.L245F 0.23 tolerated(0.72) possibly_damaging(0.694) TCGA-EE-A181-06 19 6682022 6682022 C T C3 Missense_Mutation p.R1427K 0.26 tolerated(0.31) benign(0.043) TCGA-EE-A181-06 19 6750016 6750016 C T TRIP10 Missense_Mutation p.P389L 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A181-06 19 6754925 6754925 G A SH2D3A Nonsense_Mutation p.Q300* 0.22 TCGA-EE-A181-06 19 6754926 6754926 G A SH2D3A Silent p.P299P 0.21 TCGA-EE-A181-06 19 7267804 7267804 C T INSR Silent p.T68T 0.17 TCGA-EE-A181-06 19 7601355 7601355 C G PNPLA6 Silent p.S121S 0.12 TCGA-EE-A181-06 19 763503 763503 C T MISP Silent p.V651V 0.64 TCGA-EE-A181-06 19 7689244 7689244 C T XAB2 Missense_Mutation p.E304K 0.15 deleterious(0.01) possibly_damaging(0.45) TCGA-EE-A181-06 19 7706927 7706927 G A STXBP2 Missense_Mutation p.E196K 0.21 tolerated(0.61) benign(0.152) TCGA-EE-A181-06 19 7830542 7830542 C T CLEC4M Missense_Mutation p.S78F 0.20 tolerated(0.09) probably_damaging(0.992) TCGA-EE-A181-06 19 810867 810867 C T PTBP1 3'UTR 0.26 TCGA-EE-A181-06 19 8174176 8174176 G A FBN3 Missense_Mutation p.S1518F 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 19 8175830 8175830 C T FBN3 Missense_Mutation p.G1411E 0.22 tolerated(1) benign(0.068) TCGA-EE-A181-06 19 8175831 8175831 C T FBN3 Missense_Mutation p.G1411R 0.24 tolerated(0.53) benign(0.098) TCGA-EE-A181-06 19 8609209 8609209 C T MYO1F Missense_Mutation p.G499D 0.23 deleterious(0.04) benign(0.049) TCGA-EE-A181-06 19 8616642 8616642 G A MYO1F Silent p.S251S 0.18 TCGA-EE-A181-06 19 8807960 8807960 G C ACTL9 Silent p.A364A 0.12 TCGA-EE-A181-06 19 8994501 8994501 G A MUC16 Silent p.F13797F 0.12 TCGA-EE-A181-06 19 9007840 9007840 G A MUC16 Silent p.F13128F 0.33 TCGA-EE-A181-06 19 9011397 9011397 C T MUC16 Missense_Mutation p.E12946K 0.10 probably_damaging(0.942) TCGA-EE-A181-06 19 9020785 9020785 G A MUC16 Silent p.G12439G 0.19 TCGA-EE-A181-06 19 9046028 9046028 G A MUC16 Missense_Mutation p.S11868F 0.10 possibly_damaging(0.702) TCGA-EE-A181-06 19 9049298 9049298 G A MUC16 Missense_Mutation p.S10778L 0.14 benign(0.118) TCGA-EE-A181-06 19 9049903 9049903 C T MUC16 Silent p.G10576G 0.12 TCGA-EE-A181-06 19 9059043 9059043 G A MUC16 Missense_Mutation p.T9468I 0.19 unknown(0) TCGA-EE-A181-06 19 9062188 9062188 C T MUC16 Missense_Mutation p.E8420K 0.45 unknown(0) TCGA-EE-A181-06 19 9063016 9063016 C T MUC16 Missense_Mutation p.G8144R 0.29 unknown(0) TCGA-EE-A181-06 19 9066494 9066494 G A MUC16 Silent p.S6984S 0.12 TCGA-EE-A181-06 19 9070251 9070251 G A MUC16 Missense_Mutation p.S5732L 0.36 unknown(0) TCGA-EE-A181-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.18 unknown(0) TCGA-EE-A181-06 19 9072100 9072100 C T MUC16 Missense_Mutation p.E5116K 0.19 unknown(0) TCGA-EE-A181-06 19 9075747 9075747 G A MUC16 Missense_Mutation p.S3900F 0.27 unknown(0) TCGA-EE-A181-06 19 9085838 9085838 C T MUC16 Missense_Mutation p.E1993K 0.18 unknown(0) TCGA-EE-A181-06 19 9085999 9085999 G A MUC16 Missense_Mutation p.S1939L 0.20 unknown(0) TCGA-EE-A181-06 19 9088160 9088160 G A MUC16 Missense_Mutation p.P1219S 0.16 unknown(0) TCGA-EE-A181-06 19 9091122 9091122 C T MUC16 Silent p.G231G 0.45 TCGA-EE-A181-06 19 9237048 9237048 G A OR7G3 Silent p.L193L 0.46 TCGA-EE-A181-06 19 9296777 9296777 T A OR7D2 Missense_Mutation p.F107Y 0.22 deleterious_low_confidence(0) benign(0.167) TCGA-EE-A181-06 19 9362185 9362185 C T OR7E24 Missense_Mutation p.P156S 0.12 deleterious(0.05) possibly_damaging(0.468) TCGA-EE-A181-06 19 9362186 9362186 C T OR7E24 Missense_Mutation p.P156L 0.12 deleterious(0.02) benign(0.216) TCGA-EE-A181-06 19 989777 989777 C T WDR18 Missense_Mutation p.L113F 0.25 deleterious(0.02) possibly_damaging(0.766) TCGA-EE-A181-06 1 100155137 100155137 C T PALMD Missense_Mutation p.H441Y 0.32 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A181-06 1 100327133 100327133 C T AGL Missense_Mutation p.P53S 0.21 tolerated(0.62) benign(0.002) TCGA-EE-A181-06 1 100366397 100366397 C T AGL Missense_Mutation p.P1190S 0.43 tolerated(0.08) possibly_damaging(0.772) TCGA-EE-A181-06 1 100621813 100621813 G A LRRC39 Missense_Mutation p.P192S 0.40 deleterious(0.01) possibly_damaging(0.652) TCGA-EE-A181-06 1 101186281 101186281 A G VCAM1 Missense_Mutation p.E105G 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 10166332 10166332 C T UBE4B Missense_Mutation p.P296L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-EE-A181-06 1 102296230 102296230 G A OLFM3 Nonsense_Mutation p.Q124* 0.30 TCGA-EE-A181-06 1 103488487 103488487 C T COL11A1 Silent p.R352R 0.27 TCGA-EE-A181-06 1 10356644 10356644 C T KIF1B Silent p.I548I 0.28 TCGA-EE-A181-06 1 10460536 10460536 C T PGD Silent p.S57S 0.43 TCGA-EE-A181-06 1 10468171 10468171 G A PGD Missense_Mutation p.G165R 0.24 tolerated(0.22) benign(0.122) TCGA-EE-A181-06 1 107691306 107691306 G A NTNG1 Missense_Mutation p.D31N 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A181-06 1 108703825 108703825 G A SLC25A24 Silent p.I163I 0.11 TCGA-EE-A181-06 1 108735132 108735132 G A SLC25A24 Intron 0.25 TCGA-EE-A181-06 1 109472692 109472692 C T GPSM2 3'UTR 0.22 TCGA-EE-A181-06 1 109793362 109793362 G A CELSR2 Missense_Mutation p.D221N 0.23 tolerated(0.22) possibly_damaging(0.665) TCGA-EE-A181-06 1 109795165 109795165 G A CELSR2 Missense_Mutation p.G822S 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A181-06 1 110018237 110018237 C T SYPL2 Missense_Mutation p.S55F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 110301868 110301868 C T EPS8L3 Missense_Mutation p.E133K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 110561083 110561083 C T AHCYL1 Silent p.I404I 0.22 TCGA-EE-A181-06 1 11097842 11097842 G A MASP2 Missense_Mutation p.P306S 0.15 deleterious(0) probably_damaging(0.917) TCGA-EE-A181-06 1 111060332 111060332 C T KCNA10 Missense_Mutation p.G360R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 111060333 111060333 C T KCNA10 Silent p.K359K 0.21 TCGA-EE-A181-06 1 111964220 111964220 G A OVGP1 Silent p.P228P 0.29 TCGA-EE-A181-06 1 112106515 112106515 C T ADORA3 Nonsense_Mutation p.W14* 0.21 TCGA-EE-A181-06 1 112106516 112106516 C T ADORA3 Nonsense_Mutation p.W14* 0.22 TCGA-EE-A181-06 1 112246968 112246968 C T RAP1A Missense_Mutation p.P110S 0.19 deleterious(0.03) benign(0.419) TCGA-EE-A181-06 1 113062954 113062954 C T WNT2B Silent p.D333D 0.19 TCGA-EE-A181-06 1 113140610 113140610 A T ST7L Nonsense_Mutation p.L202* 0.45 TCGA-EE-A181-06 1 11319449 11319449 A C MTOR Silent p.P6P 0.16 TCGA-EE-A181-06 1 113231667 113231667 C T MOV10 Missense_Mutation p.A83V 0.17 tolerated(0.34) benign(0.001) TCGA-EE-A181-06 1 114454916 114454916 T C DCLRE1B 3'UTR 0.33 TCGA-EE-A181-06 1 1147411 1147411 G A TNFRSF4 Missense_Mutation p.P182L 0.28 tolerated(0.14) benign(0.105) TCGA-EE-A181-06 1 115399263 115399263 G A SYCP1 Missense_Mutation p.E60K 0.38 tolerated(0.12) benign(0.094) TCGA-EE-A181-06 1 115537679 115537679 G A SYCP1 3'UTR 0.33 TCGA-EE-A181-06 1 115615569 115615569 C T TSPAN2 Silent p.K43K 0.21 TCGA-EE-A181-06 1 11585300 11585300 C G PTCHD2 Silent p.S848S 0.18 TCGA-EE-A181-06 1 1164101 1164101 G A SDF4 Missense_Mutation p.L25F 0.38 tolerated(0.27) benign(0.004) TCGA-EE-A181-06 1 116675959 116675959 G A MAB21L3 Silent p.L354L 0.34 TCGA-EE-A181-06 1 117127336 117127336 G A IGSF3 Missense_Mutation p.P947S 0.32 tolerated(0.19) benign(0.081) TCGA-EE-A181-06 1 117311124 117311124 G A CD2 Missense_Mutation p.E259K 0.22 tolerated(0.49) benign(0.065) TCGA-EE-A181-06 1 118166491 118166491 C T FAM46C Missense_Mutation p.S334F 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A181-06 1 118481118 118481118 G T WDR3 Missense_Mutation p.M172I 0.12 tolerated(0.24) benign(0.004) TCGA-EE-A181-06 1 118509305 118509305 C T SPAG17 Silent p.K2153K 0.24 TCGA-EE-A181-06 1 118548057 118548057 G A SPAG17 Missense_Mutation p.P1586S 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 1 12008121 12008121 C T PLOD1 Silent p.I55I 0.11 TCGA-EE-A181-06 1 12328772 12328772 C T VPS13D Missense_Mutation p.P604L 0.21 benign(0) TCGA-EE-A181-06 1 12854487 12854487 C T PRAMEF1 Silent p.L237L 0.19 TCGA-EE-A181-06 1 12907783 12907783 A T HNRNPCL1 Nonsense_Mutation p.Y120* 0.18 TCGA-EE-A181-06 1 12907990 12907990 G A HNRNPCL1 Silent p.G51G 0.10 TCGA-EE-A181-06 1 12942972 12942972 C T PRAMEF4 Missense_Mutation p.A82T 0.16 deleterious(0.04) possibly_damaging(0.876) TCGA-EE-A181-06 1 12942973 12942973 T A PRAMEF4 Missense_Mutation p.Q81H 0.16 tolerated(0.07) benign(0.004) TCGA-EE-A181-06 1 12954863 12954863 C T PRAMEF10 Silent p.R140R 0.46 TCGA-EE-A181-06 1 142713137 142713137 C T RP11-417J8.6 RNA 0.13 TCGA-EE-A181-06 1 142713202 142713202 C T RP11-417J8.6 RNA 0.42 TCGA-EE-A181-06 1 144859782 144859782 C T PDE4DIP Missense_Mutation p.G2101E 0.12 tolerated(0.19) benign(0.039) TCGA-EE-A181-06 1 144879433 144879433 C T PDE4DIP Silent p.Q1339Q 0.06 TCGA-EE-A181-06 1 144918872 144918872 G A PDE4DIP Silent p.H438H 0.10 TCGA-EE-A181-06 1 145561741 145561741 G A ANKRD35 Missense_Mutation p.G477S 0.19 tolerated(0.44) benign(0.006) TCGA-EE-A181-06 1 145562034 145562034 C T ANKRD35 Silent p.A574A 0.17 TCGA-EE-A181-06 1 145580513 145580513 C T PIAS3 Silent p.S271S 0.12 TCGA-EE-A181-06 1 1463114 1463114 C T ATAD3A Silent p.F507F 0.24 TCGA-EE-A181-06 1 146727493 146727493 A G CHD1L Missense_Mutation p.T125A 0.28 tolerated(0.34) benign(0.012) TCGA-EE-A181-06 1 147380093 147380093 G A GJA8 Nonsense_Mutation p.W4* 0.45 TCGA-EE-A181-06 1 149760030 149760030 G A FCGR1A Missense_Mutation p.R139Q 0.17 tolerated(1) benign(0.002) TCGA-EE-A181-06 1 149882138 149882138 G A SV2A Missense_Mutation p.P358L 0.33 deleterious(0) probably_damaging(0.993) TCGA-EE-A181-06 1 149882139 149882139 G A SV2A Missense_Mutation p.P358S 0.33 deleterious(0) possibly_damaging(0.859) TCGA-EE-A181-06 1 149885459 149885459 G A SV2A 5'UTR 0.22 TCGA-EE-A181-06 1 149916304 149916304 G A OTUD7B Missense_Mutation p.P662S 0.26 tolerated_low_confidence(0.53) benign(0.009) TCGA-EE-A181-06 1 150049782 150049782 C T VPS45 Silent p.F204F 0.13 TCGA-EE-A181-06 1 150131292 150131292 C T PLEKHO1 Silent p.R268R 0.27 TCGA-EE-A181-06 1 150971860 150971860 G A FAM63A Silent p.T370T 0.15 TCGA-EE-A181-06 1 151016195 151016195 G A BNIPL Silent p.L281L 0.18 TCGA-EE-A181-06 1 151079611 151079611 G A GABPB2 Missense_Mutation p.G279R 0.24 deleterious(0) possibly_damaging(0.86) TCGA-EE-A181-06 1 151111940 151111940 G A SEMA6C Silent p.S105S 0.45 TCGA-EE-A181-06 1 151206687 151206687 C T PIP5K1A Silent p.N218N 0.13 TCGA-EE-A181-06 1 151400396 151400396 G A POGZ Silent p.I327I 0.11 TCGA-EE-A181-06 1 152059655 152059655 A C TCHHL1 Missense_Mutation p.F168C 0.18 deleterious(0) possibly_damaging(0.525) TCGA-EE-A181-06 1 152127692 152127692 C T RPTN Missense_Mutation p.G628E 0.18 tolerated(1) benign(0.115) TCGA-EE-A181-06 1 152187656 152187656 C T HRNR Missense_Mutation p.G2150E 0.04 unknown(0) TCGA-EE-A181-06 1 152193546 152193546 G A HRNR Missense_Mutation p.H187Y 0.14 unknown(0) TCGA-EE-A181-06 1 152276257 152276257 C T FLG Missense_Mutation p.G3702E 0.16 unknown(0) TCGA-EE-A181-06 1 152281216 152281216 C T FLG Missense_Mutation p.G2049E 0.14 probably_damaging(0.982) TCGA-EE-A181-06 1 152283490 152283490 G A FLG Missense_Mutation p.S1291F 0.27 possibly_damaging(0.485) TCGA-EE-A181-06 1 152283639 152283639 G A FLG Silent p.A1241A 0.36 TCGA-EE-A181-06 1 152285532 152285532 C T FLG Silent p.G610G 0.14 TCGA-EE-A181-06 1 152285533 152285533 C T FLG Missense_Mutation p.G610E 0.14 probably_damaging(1) TCGA-EE-A181-06 1 152324098 152324098 C T FLG2 Missense_Mutation p.G2055E 0.19 probably_damaging(0.972) TCGA-EE-A181-06 1 152325161 152325161 C T FLG2 Missense_Mutation p.D1701N 0.14 possibly_damaging(0.539) TCGA-EE-A181-06 1 152326459 152326459 C T FLG2 Missense_Mutation p.R1268Q 0.26 unknown(0) TCGA-EE-A181-06 1 152382913 152382913 C T CRNN Silent p.R215R 0.12 TCGA-EE-A181-06 1 152586388 152586388 C T LCE3B Silent p.S34S 0.20 TCGA-EE-A181-06 1 152659676 152659676 G A LCE2B 3'UTR 0.14 TCGA-EE-A181-06 1 152759970 152759970 G A LCE1E Silent p.G65G 0.12 TCGA-EE-A181-06 1 153066064 153066064 G A SPRR2E Missense_Mutation p.P55L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EE-A181-06 1 153085054 153085054 C T SPRR2F Silent p.Q52Q 0.12 TCGA-EE-A181-06 1 153122501 153122501 G A SPRR2G Missense_Mutation p.P29L 0.25 unknown(0) TCGA-EE-A181-06 1 153279643 153279643 G A PGLYRP3 Silent p.L52L 0.56 TCGA-EE-A181-06 1 153516190 153516190 G A S100A4 3'UTR 0.12 TCGA-EE-A181-06 1 153791327 153791327 T G GATAD2B Silent p.R179R 0.25 TCGA-EE-A181-06 1 153791328 153791328 C T GATAD2B Missense_Mutation p.R179Q 0.26 tolerated(0.06) benign(0.296) TCGA-EE-A181-06 1 154029408 154029408 C T NUP210L Silent p.Q1041Q 0.09 TCGA-EE-A181-06 1 154033516 154033516 A C NUP210L Missense_Mutation p.S884A 0.19 tolerated(0.45) benign(0.005) TCGA-EE-A181-06 1 154218811 154218811 C T UBAP2L Missense_Mutation p.S325L 0.10 tolerated(0.68) unknown(0) TCGA-EE-A181-06 1 154309862 154309862 C T ATP8B2 Silent p.A325A 0.19 TCGA-EE-A181-06 1 154422452 154422452 C T IL6R Silent p.L354L 0.29 TCGA-EE-A181-06 1 154520125 154520125 C T TDRD10 3'UTR 0.22 TCGA-EE-A181-06 1 154574585 154574585 G A ADAR Missense_Mutation p.S178F 0.20 tolerated(0.06) benign(0.078) TCGA-EE-A181-06 1 154932029 154932029 G A PYGO2 Silent p.P149P 0.14 TCGA-EE-A181-06 1 154932050 154932050 G A PYGO2 Silent p.G142G 0.12 TCGA-EE-A181-06 1 155059042 155059042 G A EFNA3 3'UTR 0.36 TCGA-EE-A181-06 1 155156586 155156586 G A TRIM46 Missense_Mutation p.G734S 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A181-06 1 155265068 155265068 A C PKLR Missense_Mutation p.V178G 0.16 tolerated(0.13) benign(0.01) TCGA-EE-A181-06 1 155723012 155723012 C G GON4L Missense_Mutation p.G1942A 0.14 tolerated_low_confidence(0.27) possibly_damaging(0.899) TCGA-EE-A181-06 1 155823120 155823120 G A GON4L Missense_Mutation p.T151I 0.20 tolerated_low_confidence(1) benign(0) TCGA-EE-A181-06 1 155896943 155896943 G A KIAA0907 Missense_Mutation p.R157C 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 1 155935153 155935153 G A ARHGEF2 Missense_Mutation p.S174F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 1 156309485 156309485 A G TSACC 5'UTR 0.15 TCGA-EE-A181-06 1 156437342 156437342 G - MEF2D 3'UTR 0.26 TCGA-EE-A181-06 1 156640236 156640236 C T NES Silent p.G1248G 0.26 TCGA-EE-A181-06 1 156779576 156779576 G A SH2D2A Silent p.S207S 0.16 TCGA-EE-A181-06 1 156814322 156814322 A G INSRR Missense_Mutation p.V890A 0.21 deleterious(0) probably_damaging(0.99) TCGA-EE-A181-06 1 157490941 157490941 C T FCRL5 Missense_Mutation p.G794E 0.17 tolerated(0.62) possibly_damaging(0.597) TCGA-EE-A181-06 1 157557143 157557143 C T FCRL4 Missense_Mutation p.G257E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 157737491 157737491 C T FCRL2 Intron 0.17 TCGA-EE-A181-06 1 157803006 157803006 C T CD5L Missense_Mutation p.E339K 0.26 deleterious(0.03) possibly_damaging(0.772) TCGA-EE-A181-06 1 15783241 15783241 G A CELA2A 5'UTR 0.24 TCGA-EE-A181-06 1 158152800 158152800 G A CD1D Missense_Mutation p.G247D 0.11 tolerated(0.14) benign(0.162) TCGA-EE-A181-06 1 158260966 158260966 C T CD1C Missense_Mutation p.S35L 0.32 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A181-06 1 158263252 158263252 C T CD1C Nonsense_Mutation p.Q330* 0.12 TCGA-EE-A181-06 1 158325285 158325285 G A CD1E Missense_Mutation p.S184N 0.16 tolerated(0.54) benign(0.001) TCGA-EE-A181-06 1 158325885 158325885 C T CD1E Silent p.I298I 0.13 TCGA-EE-A181-06 1 158450091 158450091 C T OR10R2 Missense_Mutation p.R142C 0.16 deleterious(0.02) benign(0.117) TCGA-EE-A181-06 1 158450377 158450377 C T OR10R2 Missense_Mutation p.S237F 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 1 158549611 158549611 C T OR10X1 Missense_Mutation p.E27K 0.19 deleterious(0.03) possibly_damaging(0.773) TCGA-EE-A181-06 1 158576483 158576483 G A OR10Z1 Silent p.L85L 0.30 TCGA-EE-A181-06 1 158589113 158589113 C T SPTA1 Silent p.Q2143Q 0.14 TCGA-EE-A181-06 1 158609424 158609424 C T SPTA1 Missense_Mutation p.G1643E 0.11 tolerated(1) benign(0.358) TCGA-EE-A181-06 1 158617340 158617340 G A SPTA1 Silent p.L1295L 0.17 TCGA-EE-A181-06 1 158644127 158644127 G A SPTA1 Missense_Mutation p.R448W 0.15 deleterious(0) possibly_damaging(0.773) TCGA-EE-A181-06 1 158650416 158650416 C T SPTA1 Missense_Mutation p.G212E 0.21 tolerated(0.92) benign(0.02) TCGA-EE-A181-06 1 158650417 158650417 C T SPTA1 Missense_Mutation p.G212R 0.20 tolerated(0.67) benign(0.02) TCGA-EE-A181-06 1 158817548 158817548 G A MNDA Missense_Mutation p.E340K 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A181-06 1 158914788 158914788 C T PYHIN1 Missense_Mutation p.P439S 0.11 tolerated(0.1) benign(0.008) TCGA-EE-A181-06 1 159166775 159166775 G A CADM3 Missense_Mutation p.D327N 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A181-06 1 159409836 159409836 C T OR10J1 Silent p.L96L 0.34 TCGA-EE-A181-06 1 159779212 159779212 C T FCRL6 Missense_Mutation p.L209F 0.19 deleterious(0) probably_damaging(0.974) TCGA-EE-A181-06 1 159799820 159799820 G A SLAMF8 Missense_Mutation p.E69K 0.30 deleterious(0.01) benign(0.421) TCGA-EE-A181-06 1 159799849 159799849 C T SLAMF8 Silent p.G78G 0.10 TCGA-EE-A181-06 1 159922153 159922153 G A SLAMF9 Missense_Mutation p.S188F 0.19 tolerated(0.22) benign(0.2) TCGA-EE-A181-06 1 160093111 160093111 G A ATP1A2 Missense_Mutation p.G96R 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 160106440 160106440 G A ATP1A2 Missense_Mutation p.G882R 0.22 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 1 160167371 160167371 G A CASQ1 Silent p.R265R 0.16 TCGA-EE-A181-06 1 160607057 160607057 C T SLAMF1 Silent p.E113E 0.16 TCGA-EE-A181-06 1 160721991 160721991 G A SLAMF7 Missense_Mutation p.E297K 0.13 deleterious(0) possibly_damaging(0.798) TCGA-EE-A181-06 1 160801180 160801180 C T CD244 Missense_Mutation p.R357Q 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 161010423 161010423 G A USF1 Silent p.I219I 0.16 TCGA-EE-A181-06 1 161021199 161021199 C T ARHGAP30 Missense_Mutation p.R442K 0.42 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A181-06 1 161133981 161133981 C T USP21 Silent p.L416L 0.10 TCGA-EE-A181-06 1 161276688 161276688 T C MPZ Silent p.Q86Q 0.15 TCGA-EE-A181-06 1 161594380 161594380 G A FCGR3B Silent p.V245V 0.42 TCGA-EE-A181-06 1 161683078 161683078 G A FCRLA Missense_Mutation p.D353N 0.16 tolerated(0.16) benign(0.216) TCGA-EE-A181-06 1 161692490 161692490 C T FCRLB Silent p.L10L 0.42 TCGA-EE-A181-06 1 162381788 162381788 G A SH2D1B Missense_Mutation p.H7Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 1 16255331 16255331 G A SPEN Missense_Mutation p.G866R 0.16 probably_damaging(1) TCGA-EE-A181-06 1 16262634 16262634 G A SPEN Missense_Mutation p.G3300E 0.26 probably_damaging(0.998) TCGA-EE-A181-06 1 165218718 165218718 C T LMX1A Silent p.Q141Q 0.09 TCGA-EE-A181-06 1 166927179 166927179 G A ILDR2 Missense_Mutation p.S69F 0.11 deleterious(0) possibly_damaging(0.794) TCGA-EE-A181-06 1 166958983 166958983 G A MAEL Missense_Mutation p.E48K 0.13 tolerated(0.25) benign(0.079) TCGA-EE-A181-06 1 167096099 167096099 G A DUSP27 Silent p.G577G 0.23 TCGA-EE-A181-06 1 167830154 167830154 C T ADCY10 Silent p.L588L 0.28 TCGA-EE-A181-06 1 168549308 168549308 G A XCL1 Silent p.G23G 0.26 TCGA-EE-A181-06 1 169511128 169511128 G A F5 Missense_Mutation p.S1067L 0.13 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-EE-A181-06 1 169511792 169511792 C T F5 Missense_Mutation p.G846R 0.22 tolerated(0.26) benign(0.097) TCGA-EE-A181-06 1 169511939 169511939 C T F5 Missense_Mutation p.A797T 0.27 tolerated(1) benign(0) TCGA-EE-A181-06 1 169512207 169512207 C T F5 Silent p.R707R 0.18 TCGA-EE-A181-06 1 169565292 169565292 G A SELP Missense_Mutation p.H658Y 0.16 tolerated(1) benign(0.242) TCGA-EE-A181-06 1 169576250 169576250 C T SELP Missense_Mutation p.G486R 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 1 169586560 169586560 G A SELP Missense_Mutation p.R63C 0.24 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A181-06 1 169672445 169672445 G A SELL Silent p.T314T 0.27 TCGA-EE-A181-06 1 1696783 1696783 G A NADK Silent p.Y21Y 0.17 TCGA-EE-A181-06 1 169696611 169696611 C T SELE Silent p.G508G 0.22 TCGA-EE-A181-06 1 169697057 169697057 C T SELE Missense_Mutation p.D431N 0.19 tolerated(0.14) benign(0.024) TCGA-EE-A181-06 1 169698418 169698418 G A SELE Silent p.F333F 0.21 TCGA-EE-A181-06 1 170967540 170967540 G A MROH9 Intron 0.19 TCGA-EE-A181-06 1 172100386 172100386 C T DNM3 Silent p.F539F 0.14 TCGA-EE-A181-06 1 173176298 173176298 G C TNFSF4 Silent p.P6P 0.23 TCGA-EE-A181-06 1 17322947 17322947 G A ATP13A2 Missense_Mutation p.P414S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 173470222 173470222 G A SLC9C2 3'UTR 0.33 TCGA-EE-A181-06 1 174219735 174219735 G A RABGAP1L Silent p.L280L 0.30 TCGA-EE-A181-06 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.14 tolerated(0.12) benign(0.376) TCGA-EE-A181-06 1 175362936 175362936 C T TNR Missense_Mutation p.E446K 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A181-06 1 175375553 175375553 C T TNR Missense_Mutation p.E100K 0.23 deleterious(0.02) benign(0.144) TCGA-EE-A181-06 1 17548896 17548896 G A PADI1 Nonsense_Mutation p.W68* 0.28 TCGA-EE-A181-06 1 175937541 175937541 G A RFWD2 Intron 0.20 TCGA-EE-A181-06 1 17603141 17603141 C T PADI3 Missense_Mutation p.P479S 0.16 deleterious(0) probably_damaging(0.964) TCGA-EE-A181-06 1 176564105 176564105 C T PAPPA2 Silent p.V455V 0.12 TCGA-EE-A181-06 1 176863776 176863776 G A ASTN1 Silent p.T954T 0.19 TCGA-EE-A181-06 1 177199220 177199220 G A BRINP2 Missense_Mutation p.E70K 0.26 deleterious(0.01) possibly_damaging(0.482) TCGA-EE-A181-06 1 177226508 177226508 G A BRINP2 Silent p.T219T 0.33 TCGA-EE-A181-06 1 177250484 177250484 G A BRINP2 Silent p.R724R 0.17 TCGA-EE-A181-06 1 178427460 178427460 C T RASAL2 Silent p.I1011I 0.18 TCGA-EE-A181-06 1 179520481 179520481 G A NPHS2 Missense_Mutation p.L327F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 179632540 179632540 C T TDRD5 Missense_Mutation p.L855F 0.28 tolerated(0.44) benign(0.093) TCGA-EE-A181-06 1 179815540 179815540 T G TOR1AIP2 Missense_Mutation p.K360T 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 179966020 179966020 T G CEP350 Missense_Mutation p.M243R 0.15 benign(0.001) TCGA-EE-A181-06 1 18149712 18149712 G A ACTL8 Missense_Mutation p.G70D 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 181689349 181689349 G A CACNA1E Missense_Mutation p.A587T 0.22 tolerated(0.74) possibly_damaging(0.787) TCGA-EE-A181-06 1 181701924 181701924 G A CACNA1E Missense_Mutation p.G901E 0.13 tolerated(0.18) probably_damaging(0.931) TCGA-EE-A181-06 1 181705548 181705548 T C CACNA1E Missense_Mutation p.F1134L 0.38 deleterious(0.01) possibly_damaging(0.481) TCGA-EE-A181-06 1 181726166 181726166 C G CACNA1E Silent p.P1411P 0.14 TCGA-EE-A181-06 1 181764136 181764136 A G CACNA1E Missense_Mutation p.H2055R 0.17 tolerated(1) possibly_damaging(0.599) TCGA-EE-A181-06 1 182025563 182025563 C T ZNF648 Missense_Mutation p.G528E 0.24 deleterious(0) probably_damaging(0.988) TCGA-EE-A181-06 1 182368920 182368920 G A TEDDM1 Missense_Mutation p.T234I 0.17 tolerated(0.24) benign(0.005) TCGA-EE-A181-06 1 183895301 183895301 T C RGL1 Missense_Mutation p.F763L 0.18 deleterious(0) probably_damaging(0.971) TCGA-EE-A181-06 1 183938499 183938499 C T COLGALT2 Missense_Mutation p.E246K 0.18 deleterious(0.05) benign(0.004) TCGA-EE-A181-06 1 184765049 184765049 C T FAM129A Missense_Mutation p.E617K 0.23 deleterious(0) possibly_damaging(0.858) TCGA-EE-A181-06 1 185143738 185143738 T C SWT1 Silent p.S153S 0.12 TCGA-EE-A181-06 1 185902767 185902767 G A HMCN1 Missense_Mutation p.V547M 0.20 possibly_damaging(0.745) TCGA-EE-A181-06 1 185972914 185972914 C T HMCN1 Silent p.V1471V 0.20 TCGA-EE-A181-06 1 186266058 186266058 C T PRG4 Silent p.F17F 0.11 TCGA-EE-A181-06 1 186273947 186273947 A T PRG4 Missense_Mutation p.Q164L 0.17 probably_damaging(0.989) TCGA-EE-A181-06 1 186273948 186273948 A C PRG4 Missense_Mutation p.Q164H 0.17 probably_damaging(0.997) TCGA-EE-A181-06 1 186286631 186286631 G A TPR Missense_Mutation p.P2308L 0.16 probably_damaging(0.927) TCGA-EE-A181-06 1 186648472 186648472 C T PTGS2 Missense_Mutation p.G51R 0.14 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 1 18703912 18703912 G A IGSF21 Silent p.T440T 0.19 TCGA-EE-A181-06 1 19027170 19027170 C T PAX7 Silent p.A270A 0.13 TCGA-EE-A181-06 1 192985413 192985413 C T UCHL5 3'UTR 0.19 TCGA-EE-A181-06 1 193119437 193119437 C T CDC73 Missense_Mutation p.P278S 0.12 tolerated(0.56) benign(0.006) TCGA-EE-A181-06 1 19471391 19471391 A T UBR4 Missense_Mutation p.H2652Q 0.14 benign(0.132) TCGA-EE-A181-06 1 196711041 196711041 C T CFH Missense_Mutation p.A998V 0.18 tolerated(0.05) benign(0.41) TCGA-EE-A181-06 1 196743953 196743953 G A CFHR3 5'UTR 0.26 TCGA-EE-A181-06 1 196874238 196874238 G A CFHR4 Missense_Mutation p.R85K 0.15 tolerated(0.74) benign(0.102) TCGA-EE-A181-06 1 196971688 196971688 G A CFHR5 Silent p.Q408Q 0.41 TCGA-EE-A181-06 1 197097732 197097732 G A ASPM Missense_Mutation p.R942C 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 197396624 197396624 T G CRB1 Silent p.G723G 0.10 TCGA-EE-A181-06 1 198509744 198509744 G A ATP6V1G3 Nonsense_Mutation p.Q13* 0.28 TCGA-EE-A181-06 1 198665938 198665938 A T PTPRC Missense_Mutation p.E66D 0.16 tolerated_low_confidence(0.47) benign(0.03) TCGA-EE-A181-06 1 200090049 200090049 C T NR5A2 Silent p.F448F 0.15 TCGA-EE-A181-06 1 200584717 200584717 G A KIF14 Missense_Mutation p.S378F 0.12 tolerated(0.71) benign(0.022) TCGA-EE-A181-06 1 200822453 200822453 G A CAMSAP2 Missense_Mutation p.R1218K 0.21 tolerated(0.12) benign(0.044) TCGA-EE-A181-06 1 200968558 200968558 C T KIF21B Missense_Mutation p.E602K 0.20 tolerated(0.18) probably_damaging(0.931) TCGA-EE-A181-06 1 201031122 201031122 G A CACNA1S Silent p.L1001L 0.30 TCGA-EE-A181-06 1 201197557 201197557 C T IGFN1 3'UTR 0.20 TCGA-EE-A181-06 1 201287819 201287819 C T PKP1 Silent p.A376A 0.25 TCGA-EE-A181-06 1 201330308 201330308 G A TNNT2 Intron 0.20 TCGA-EE-A181-06 1 203037626 203037626 C T PPFIA4 Missense_Mutation p.S559F 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A181-06 1 203467963 203467963 G A OPTC Silent p.G175G 0.16 TCGA-EE-A181-06 1 203682354 203682354 C T ATP2B4 Missense_Mutation p.P758L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 203709006 203709006 C T ATP2B4 3'UTR 0.17 TCGA-EE-A181-06 1 204167525 204167525 C T GOLT1A 3'UTR 0.26 TCGA-EE-A181-06 1 205275413 205275413 T C NUAK2 Missense_Mutation p.N198S 0.16 deleterious(0.01) benign(0.06) TCGA-EE-A181-06 1 205779582 205779582 G A SLC41A1 5'UTR 0.11 TCGA-EE-A181-06 1 205779583 205779583 G T SLC41A1 5'UTR 0.12 TCGA-EE-A181-06 1 205896708 205896708 T C SLC26A9 Missense_Mutation p.N376S 0.13 deleterious(0) probably_damaging(0.969) TCGA-EE-A181-06 1 205904914 205904914 C T SLC26A9 Missense_Mutation p.R12K 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A181-06 1 206224443 206224445 GGA ATT AVPR1B Translation_Start_Site p.MD1_?2 0.09 TCGA-EE-A181-06 1 206239573 206239573 C T C1orf186 Missense_Mutation p.E109K 0.15 tolerated(1) benign(0.001) TCGA-EE-A181-06 1 206757851 206757851 G A RASSF5 Missense_Mutation p.D275N 0.35 tolerated(0.05) benign(0.214) TCGA-EE-A181-06 1 207110677 207110677 G A PIGR Silent p.L270L 0.14 TCGA-EE-A181-06 1 207131974 207131974 C T FCAMR Missense_Mutation p.E541K 0.14 deleterious(0) possibly_damaging(0.526) TCGA-EE-A181-06 1 207235357 207235357 C T PFKFB2 Missense_Mutation p.R49W 0.19 probably_damaging(1) TCGA-EE-A181-06 1 207785290 207785290 C T CR1 Missense_Mutation p.S2160F 0.18 tolerated(0.35) probably_damaging(0.947) TCGA-EE-A181-06 1 207925591 207925591 C T CD46 Missense_Mutation p.P12S 0.14 tolerated(0.84) benign(0.003) TCGA-EE-A181-06 1 208217962 208217962 G A PLXNA2 Silent p.I1255I 0.13 TCGA-EE-A181-06 1 209803983 209803983 C T LAMB3 Missense_Mutation p.G307D 0.23 tolerated(1) benign(0.004) TCGA-EE-A181-06 1 211093130 211093130 C T KCNH1 Silent p.G438G 0.11 TCGA-EE-A181-06 1 212190337 212190337 G A INTS7 Missense_Mutation p.P134S 0.14 tolerated(0.14) possibly_damaging(0.891) TCGA-EE-A181-06 1 214170305 214170305 C T PROX1 Missense_Mutation p.P143S 0.17 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 1 214170452 214170452 G A PROX1 Missense_Mutation p.E192K 0.20 tolerated(0.08) benign(0.119) TCGA-EE-A181-06 1 214170820 214170820 G A PROX1 Silent p.L314L 0.16 TCGA-EE-A181-06 1 214567116 214567116 T C PTPN14 Missense_Mutation p.D284G 0.16 deleterious(0) probably_damaging(0.959) TCGA-EE-A181-06 1 215853563 215853563 T A USH2A Silent p.V4074V 0.12 TCGA-EE-A181-06 1 215916657 215916657 G A USH2A Missense_Mutation p.P3804S 0.10 probably_damaging(0.971) TCGA-EE-A181-06 1 215931972 215931972 C T USH2A Missense_Mutation p.G3785E 0.11 possibly_damaging(0.904) TCGA-EE-A181-06 1 216373131 216373131 C T USH2A Missense_Mutation p.D1217N 0.24 benign(0) TCGA-EE-A181-06 1 216595568 216595568 G A USH2A Silent p.F37F 0.17 TCGA-EE-A181-06 1 216850657 216850657 C T ESRRG Missense_Mutation p.G83E 0.25 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A181-06 1 21798081 21798081 C T NBPF3 Missense_Mutation p.H156Y 0.12 deleterious(0) benign(0.403) TCGA-EE-A181-06 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.22 deleterious(0) probably_damaging(0.977) TCGA-EE-A181-06 1 221879692 221879692 G A DUSP10 Missense_Mutation p.P310S 0.14 tolerated(0.54) benign(0) TCGA-EE-A181-06 1 222696219 222696219 C T HHIPL2 Silent p.L633L 0.15 TCGA-EE-A181-06 1 222802528 222802528 C T MIA3 Missense_Mutation p.P656S 0.14 tolerated(1) benign(0) TCGA-EE-A181-06 1 222860275 222860275 G A AIDA Missense_Mutation p.P153S 0.20 tolerated(0.51) benign(0.003) TCGA-EE-A181-06 1 222919965 222919965 C T FAM177B Silent p.I26I 0.20 TCGA-EE-A181-06 1 223285326 223285326 C T TLR5 Missense_Mutation p.E350K 0.21 deleterious(0) possibly_damaging(0.513) TCGA-EE-A181-06 1 223395454 223395454 C G SUSD4 3'UTR 0.17 TCGA-EE-A181-06 1 226058783 226058783 G A TMEM63A Missense_Mutation p.R122C 0.29 deleterious(0.03) benign(0.04) TCGA-EE-A181-06 1 226562050 226562050 T G PARP1 Missense_Mutation p.E649D 0.14 tolerated(0.41) benign(0.05) TCGA-EE-A181-06 1 226924800 226924800 G A ITPKB Silent p.S120S 0.40 TCGA-EE-A181-06 1 227843398 227843398 C T ZNF678 Missense_Mutation p.H483Y 0.16 deleterious(0.02) possibly_damaging(0.83) TCGA-EE-A181-06 1 228284827 228284827 C T ARF1 Silent p.I4I 0.15 TCGA-EE-A181-06 1 228434376 228434376 C T OBSCN Missense_Mutation p.S1394L 0.15 possibly_damaging(0.503) TCGA-EE-A181-06 1 228456272 228456272 G A OBSCN Missense_Mutation p.E1819K 0.38 probably_damaging(0.99) TCGA-EE-A181-06 1 228475408 228475408 G T OBSCN Silent p.R3615R 0.30 TCGA-EE-A181-06 1 22852823 22852823 C T ZBTB40 Silent p.L1218L 0.18 TCGA-EE-A181-06 1 22895813 22895813 G A EPHA8 Silent p.G42G 0.18 TCGA-EE-A181-06 1 230846251 230846251 G A AGT Missense_Mutation p.R116C 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 1 232940797 232940797 T A MAP10 Missense_Mutation p.W10R 0.13 possibly_damaging(0.781) TCGA-EE-A181-06 1 233270791 233270791 C T PCNXL2 Missense_Mutation p.D1269N 0.14 tolerated(0.1) benign(0.033) TCGA-EE-A181-06 1 233489594 233489594 C T MLK4 Missense_Mutation p.P343L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 233512202 233512202 G A MLK4 Missense_Mutation p.S618N 0.15 tolerated(0.49) benign(0.012) TCGA-EE-A181-06 1 233514709 233514709 G A MLK4 Missense_Mutation p.G653R 0.12 tolerated(0.12) possibly_damaging(0.796) TCGA-EE-A181-06 1 233807123 233807123 G A KCNK1 Silent p.K286K 0.16 TCGA-EE-A181-06 1 234509379 234509379 C T COA6 5'Flank 0.15 TCGA-EE-A181-06 1 234569302 234569302 G A TARBP1 Missense_Mutation p.R750C 0.10 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 1 235324590 235324590 C T RBM34 5'UTR 0.09 TCGA-EE-A181-06 1 235973692 235973692 T G LYST Missense_Mutation p.K142N 0.17 deleterious_low_confidence(0) benign(0.193) TCGA-EE-A181-06 1 236721799 236721799 G A HEATR1 Missense_Mutation p.L1648F 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 1 23758348 23758348 G A ASAP3 Missense_Mutation p.P796L 0.25 tolerated(0.06) benign(0.002) TCGA-EE-A181-06 1 237872321 237872321 C T RYR2 Silent p.I3355I 0.17 TCGA-EE-A181-06 1 237972297 237972297 G A RYR2 Missense_Mutation p.G4799S 0.18 probably_damaging(0.982) TCGA-EE-A181-06 1 237982470 237982470 C T RYR2 Silent p.V4856V 0.12 TCGA-EE-A181-06 1 238090427 238090427 G A RP11-193H5.1 RNA 0.42 TCGA-EE-A181-06 1 240071559 240071559 G A CHRM3 Missense_Mutation p.A270T 0.21 deleterious(0) probably_damaging(0.945) TCGA-EE-A181-06 1 240969462 240969462 C T RGS7 Missense_Mutation p.R416Q 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 1 241669301 241669301 A C FH Splice_Site p.X302_splice 0.11 TCGA-EE-A181-06 1 244214676 244214676 C T ZBTB18 5'UTR 0.25 TCGA-EE-A181-06 1 244724443 244724443 C T C1orf101 Silent p.F501F 0.16 TCGA-EE-A181-06 1 244756721 244756721 G A C1orf101 Silent p.S738S 0.15 TCGA-EE-A181-06 1 245809553 245809553 C T KIF26B Silent p.L743L 0.19 TCGA-EE-A181-06 1 246907403 246907403 C T SCCPDH Silent p.F180F 0.13 TCGA-EE-A181-06 1 246930509 246930509 C T SCCPDH Silent p.F399F 0.30 TCGA-EE-A181-06 1 247597441 247597441 C T NLRP3 Silent p.F788F 0.17 TCGA-EE-A181-06 1 247655249 247655249 C T OR2W5 RNA 0.15 TCGA-EE-A181-06 1 247655354 247655354 G C OR2W5 RNA 0.25 TCGA-EE-A181-06 1 247695139 247695139 G A OR2C3 Silent p.A225A 0.26 TCGA-EE-A181-06 1 247752107 247752107 C T OR2G2 Missense_Mutation p.S149F 0.21 tolerated(0.18) benign(0.049) TCGA-EE-A181-06 1 247920929 247920929 G A OR1C1 Silent p.F260F 0.18 TCGA-EE-A181-06 1 248059641 248059641 C T OR2W3 Silent p.F251F 0.29 TCGA-EE-A181-06 1 248112298 248112298 C T OR2L8 Missense_Mutation p.L47F 0.16 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A181-06 1 248112406 248112406 G A OR2L8 Missense_Mutation p.D83N 0.20 tolerated(1) benign(0.003) TCGA-EE-A181-06 1 248129444 248129444 C T OR2AK2 Missense_Mutation p.L271F 0.22 tolerated(0.24) benign(0.443) TCGA-EE-A181-06 1 248263174 248263174 C T OR2L13 Missense_Mutation p.P166L 0.19 deleterious(0) probably_damaging(0.929) TCGA-EE-A181-06 1 248308485 248308485 C T OR2M5 Silent p.F12F 0.33 TCGA-EE-A181-06 1 248343831 248343831 C T OR2M2 Missense_Mutation p.P182S 0.14 deleterious(0.02) benign(0.302) TCGA-EE-A181-06 1 248436382 248436382 C T OR2T33 Silent p.V245V 0.12 TCGA-EE-A181-06 1 248458248 248458248 G A OR2T12 Silent p.L211L 0.21 TCGA-EE-A181-06 1 248512880 248512880 G A OR14C36 Silent p.Q268Q 0.27 TCGA-EE-A181-06 1 248685082 248685082 C T OR2G6 Silent p.L45L 0.17 TCGA-EE-A181-06 1 248685473 248685473 C T OR2G6 Missense_Mutation p.H176Y 0.23 deleterious(0) probably_damaging(0.981) TCGA-EE-A181-06 1 248845046 248845046 G A OR14I1 Missense_Mutation p.S187F 0.33 deleterious(0.02) possibly_damaging(0.86) TCGA-EE-A181-06 1 25773355 25773355 C T TMEM57 Silent p.F61F 0.25 TCGA-EE-A181-06 1 26104700 26104700 C T MAN1C1 Silent p.F454F 0.45 TCGA-EE-A181-06 1 26107523 26107523 G A MAN1C1 Missense_Mutation p.E524K 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A181-06 1 26110160 26110160 C T MAN1C1 Silent p.L591L 0.25 TCGA-EE-A181-06 1 26227983 26227983 T C STMN1 Missense_Mutation p.K126R 0.13 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A181-06 1 27120624 27120624 C T PIGV Silent p.I33I 0.19 TCGA-EE-A181-06 1 27120625 27120625 C T PIGV Missense_Mutation p.P34S 0.18 deleterious(0.03) possibly_damaging(0.67) TCGA-EE-A181-06 1 27124247 27124247 C T PIGV Missense_Mutation p.S465F 0.28 deleterious(0) probably_damaging(0.974) TCGA-EE-A181-06 1 27632900 27632900 C T WDTC1 3'UTR 0.40 TCGA-EE-A181-06 1 27720522 27720522 C T GPR3 Missense_Mutation p.P74S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 29029081 29029081 G A GMEB1 Missense_Mutation p.E254K 0.19 deleterious(0.04) benign(0.001) TCGA-EE-A181-06 1 2939269 2939269 C T ACTRT2 Missense_Mutation p.S340F 0.27 deleterious(0) possibly_damaging(0.548) TCGA-EE-A181-06 1 31194229 31194229 C T MATN1 Intron 0.16 TCGA-EE-A181-06 1 31208062 31208062 C T LAPTM5 Missense_Mutation p.M219I 0.19 tolerated(0.45) benign(0.029) TCGA-EE-A181-06 1 32688000 32688000 C T EIF3I 5'UTR 0.20 TCGA-EE-A181-06 1 33583691 33583691 C T ADC Silent p.I406I 0.23 TCGA-EE-A181-06 1 33623903 33623903 G A TRIM62 Silent p.G276G 0.18 TCGA-EE-A181-06 1 33799694 33799694 G A PHC2 Silent p.F585F 0.33 TCGA-EE-A181-06 1 33944950 33944950 C T ZSCAN20 Silent p.L21L 0.35 TCGA-EE-A181-06 1 34037281 34037281 C T CSMD2 Missense_Mutation p.R2605Q 0.11 tolerated(0.2) possibly_damaging(0.746) TCGA-EE-A181-06 1 34276422 34276422 G A CSMD2 Silent p.I416I 0.19 TCGA-EE-A181-06 1 34663106 34663106 G A C1orf94 Missense_Mutation p.D201N 0.12 deleterious(0.02) possibly_damaging(0.901) TCGA-EE-A181-06 1 34663234 34663234 C T C1orf94 Silent p.F243F 0.13 TCGA-EE-A181-06 1 35223303 35223303 G A GJB5 Silent p.R124R 0.21 TCGA-EE-A181-06 1 35227593 35227593 G A GJB4 Silent p.E246E 0.32 TCGA-EE-A181-06 1 35351751 35351751 G A DLGAP3 Nonsense_Mutation p.Q508* 0.25 TCGA-EE-A181-06 1 35351752 35351752 G A DLGAP3 Silent p.I507I 0.25 TCGA-EE-A181-06 1 35477565 35477565 G A ZMYM6 Missense_Mutation p.P330S 0.25 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-EE-A181-06 1 36028899 36028899 C T NCDN Silent p.F494F 0.20 TCGA-EE-A181-06 1 36230872 36230872 G A CLSPN Missense_Mutation p.P27L 0.41 tolerated(0.07) benign(0.002) TCGA-EE-A181-06 1 3755581 3755581 G A CEP104 Missense_Mutation p.R280C 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 37941452 37941452 C T ZC3H12A Missense_Mutation p.P119S 0.38 tolerated(0.11) benign(0.004) TCGA-EE-A181-06 1 38049513 38049513 G A GNL2 Silent p.I197I 0.19 TCGA-EE-A181-06 1 39381318 39381318 C T RHBDL2 Missense_Mutation p.G104D 0.25 deleterious(0.02) possibly_damaging(0.839) TCGA-EE-A181-06 1 39790319 39790319 T C MACF1 Missense_Mutation p.V1469A 0.22 benign(0.001) TCGA-EE-A181-06 1 40131798 40131798 G A NT5C1A Silent p.Y82Y 0.19 TCGA-EE-A181-06 1 41012346 41012346 C T ZNF684 Silent p.H117H 0.41 TCGA-EE-A181-06 1 41012347 41012347 C T ZNF684 Missense_Mutation p.H118Y 0.40 deleterious(0.03) benign(0.003) TCGA-EE-A181-06 1 41948242 41948242 C T EDN2 Missense_Mutation p.G80D 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 42047508 42047508 C T HIVEP3 Silent p.E987E 0.22 TCGA-EE-A181-06 1 42050193 42050193 G A HIVEP3 Silent p.I92I 0.23 TCGA-EE-A181-06 1 43675604 43675604 C T WDR65 Missense_Mutation p.S649F 0.18 deleterious(0.04) benign(0.031) TCGA-EE-A181-06 1 43855478 43855478 C T MED8 5'UTR 0.46 TCGA-EE-A181-06 1 44423730 44423730 C T IPO13 Missense_Mutation p.P541L 0.38 deleterious(0.02) possibly_damaging(0.615) TCGA-EE-A181-06 1 44461750 44461750 G A CCDC24 Nonsense_Mutation p.W281* 0.37 TCGA-EE-A181-06 1 44461751 44461751 G A CCDC24 Nonsense_Mutation p.W281* 0.36 TCGA-EE-A181-06 1 44466677 44466677 G A SLC6A9 Silent p.S535S 0.35 TCGA-EE-A181-06 1 45293593 45293593 G A PTCH2 Silent p.S660S 0.16 TCGA-EE-A181-06 1 45486431 45486431 C T ZSWIM5 Missense_Mutation p.E827K 0.24 tolerated(0.15) unknown(0) TCGA-EE-A181-06 1 45516811 45516811 C T ZSWIM5 Missense_Mutation p.G456E 0.38 deleterious(0) unknown(0) TCGA-EE-A181-06 1 45965908 45965908 C T MMACHC 5'UTR 0.20 TCGA-EE-A181-06 1 46093858 46093858 G A GPBP1L1 3'UTR 0.24 TCGA-EE-A181-06 1 46878863 46878863 G A FAAH Missense_Mutation p.G528R 0.17 tolerated(0.27) benign(0.35) TCGA-EE-A181-06 1 47533301 47533301 C T CYP4Z1 Missense_Mutation p.P47S 0.23 deleterious(0.02) probably_damaging(0.96) TCGA-EE-A181-06 1 47614403 47614403 C T CYP4A22 Silent p.S498S 0.14 TCGA-EE-A181-06 1 52841252 52841252 T C ORC1 Missense_Mutation p.D718G 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 1 53554641 53554641 G A SLC1A7 Missense_Mutation p.R458C 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 53580402 53580402 C T SLC1A7 Intron 0.44 TCGA-EE-A181-06 1 53679099 53679099 C T CPT2 Silent p.A603A 0.20 TCGA-EE-A181-06 1 53932313 53932313 C T DMRTB1 Missense_Mutation p.S336L 0.20 deleterious(0.01) unknown(0) TCGA-EE-A181-06 1 54360102 54360102 C T DIO1 Silent p.F73F 0.22 TCGA-EE-A181-06 1 54475959 54475959 G A LDLRAD1 Silent p.S155S 0.43 TCGA-EE-A181-06 1 55119556 55119556 C T MROH7 Silent p.S319S 0.17 TCGA-EE-A181-06 1 55223872 55223872 G A PARS2 Silent p.F321F 0.22 TCGA-EE-A181-06 1 55562228 55562257 CGTCATTTAGGTCAAATTCTTCTATAACTG - USP24 In_Frame_Del p.T1992_E2002delinsK 0.39 TCGA-EE-A181-06 1 57257960 57257960 C T C1orf168 Missense_Mutation p.G176R 0.12 tolerated(0.19) benign(0.056) TCGA-EE-A181-06 1 57378226 57378226 G A C8A Missense_Mutation p.E511K 0.15 tolerated(0.87) benign(0.006) TCGA-EE-A181-06 1 57480650 57480650 G A DAB1 Silent p.V450V 0.30 TCGA-EE-A181-06 1 57480958 57480958 G A DAB1 Missense_Mutation p.P348S 0.27 deleterious(0.04) benign(0.067) TCGA-EE-A181-06 1 59002385 59002385 G A OMA1 Missense_Mutation p.P177S 0.15 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A181-06 1 6215743 6215743 C A CHD5 Missense_Mutation p.W141L 0.14 tolerated(0.1) probably_damaging(0.979) TCGA-EE-A181-06 1 62367033 62367033 A G INADL Missense_Mutation p.N1095D 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 64672524 64672524 C T UBE2U Missense_Mutation p.P76S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 1 66067587 66067587 G A LEPR Nonsense_Mutation p.W449* 0.19 TCGA-EE-A181-06 1 66075961 66075961 T C LEPR Silent p.N659N 0.25 TCGA-EE-A181-06 1 66101927 66101927 T C LEPR Silent p.G909G 0.20 TCGA-EE-A181-06 1 6631005 6631005 C T TAS1R1 Silent p.F76F 0.17 TCGA-EE-A181-06 1 6653740 6653740 G A KLHL21 Intron 0.45 TCGA-EE-A181-06 1 67592890 67592890 G A C1orf141 Missense_Mutation p.L12F 0.20 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A181-06 1 67895733 67895733 G A SERBP1 Missense_Mutation p.P84L 0.29 deleterious(0.01) benign(0.016) TCGA-EE-A181-06 1 70505212 70505212 G A LRRC7 Silent p.R1197R 0.16 TCGA-EE-A181-06 1 70555436 70555436 T G LRRC7 Silent p.P1455P 0.11 TCGA-EE-A181-06 1 75037852 75037852 C T C1orf173 Missense_Mutation p.R1181K 0.17 tolerated(0.3) benign(0.011) TCGA-EE-A181-06 1 75038907 75038907 C T C1orf173 Silent p.R829R 0.23 TCGA-EE-A181-06 1 75078318 75078318 A G C1orf173 Silent p.S392S 0.12 TCGA-EE-A181-06 1 75685496 75685496 G A SLC44A5 Silent p.V389V 0.19 TCGA-EE-A181-06 1 75693468 75693468 C T SLC44A5 Missense_Mutation p.G310R 0.46 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A181-06 1 75707697 75707697 G A SLC44A5 Missense_Mutation p.P174L 0.19 deleterious(0) probably_damaging(0.95) TCGA-EE-A181-06 1 76397819 76397819 T G ASB17 Missense_Mutation p.K53T 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.727) TCGA-EE-A181-06 1 7724488 7724488 C T CAMTA1 Silent p.V627V 0.21 TCGA-EE-A181-06 1 77620211 77620211 G A PIGK Silent p.F303F 0.26 TCGA-EE-A181-06 1 79402088 79402088 C T ELTD1 Missense_Mutation p.V257I 0.19 deleterious(0.03) benign(0.007) TCGA-EE-A181-06 1 82372750 82372750 C T LPHN2 Missense_Mutation p.S41F 0.26 deleterious(0) possibly_damaging(0.9) TCGA-EE-A181-06 1 84880305 84880305 C T DNASE2B Silent p.S280S 0.33 TCGA-EE-A181-06 1 85116084 85116084 G A SSX2IP Missense_Mutation p.S544L 0.20 tolerated(0.08) benign(0.002) TCGA-EE-A181-06 1 85418002 85418002 G A MCOLN2 Missense_Mutation p.S224F 0.46 deleterious(0.04) benign(0.046) TCGA-EE-A181-06 1 86048110 86048110 G A CYR61 Missense_Mutation p.E216K 0.20 tolerated(0.42) benign(0.021) TCGA-EE-A181-06 1 86515844 86515844 G A COL24A1 Missense_Mutation p.P623L 0.21 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A181-06 1 8674734 8674734 G A RERE Silent p.S136S 0.21 TCGA-EE-A181-06 1 87538833 87538833 C T HS2ST1 Missense_Mutation p.P114L 0.18 tolerated(0.52) benign(0.059) TCGA-EE-A181-06 1 89524531 89524531 C T GBP1 Silent p.L208L 0.11 TCGA-EE-A181-06 1 89579775 89579775 C T GBP2 Missense_Mutation p.S358N 0.11 deleterious(0.01) benign(0.057) TCGA-EE-A181-06 1 89607325 89607325 C T GBP7 Missense_Mutation p.E458K 0.31 tolerated(0.08) benign(0.185) TCGA-EE-A181-06 1 89848427 89848427 G A GBP6 Missense_Mutation p.G453R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 90049231 90049231 C T LRRC8B Missense_Mutation p.S341F 0.23 deleterious(0) probably_damaging(0.986) TCGA-EE-A181-06 1 91977433 91977433 C T CDC7 Silent p.H175H 0.36 TCGA-EE-A181-06 1 92428378 92428378 A - BRDT Frame_Shift_Del p.K23Rfs*6 0.17 TCGA-EE-A181-06 1 92446284 92446284 G A BRDT Missense_Mutation p.E458K 0.27 tolerated(0.45) benign(0.005) TCGA-EE-A181-06 1 94054934 94054934 G A BCAR3 Missense_Mutation p.R177C 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 1 94543444 94543444 C T ABCA4 Splice_Site p.X453_splice 0.29 TCGA-EE-A181-06 1 94640093 94640093 C T ARHGAP29 Missense_Mutation p.G1040R 0.29 tolerated(0.08) benign(0.037) TCGA-EE-A181-06 1 95709865 95709865 C T RWDD3 Missense_Mutation p.P62S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 95712135 95712135 T C RWDD3 Missense_Mutation p.V204A 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 1 97544507 97544507 C T DPYD 3'UTR 0.27 TCGA-EE-A181-06 1 97700466 97700466 C T DPYD Missense_Mutation p.G795E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 1 9804042 9804042 G A CLSTN1 Missense_Mutation p.S419F 0.27 deleterious(0.03) benign(0.073) TCGA-EE-A181-06 1 98060651 98060651 C T DPYD Missense_Mutation p.D308N 0.31 tolerated(0.16) benign(0.004) TCGA-EE-A181-06 20 11903564 11903564 C T BTBD3 Silent p.L273L 0.12 TCGA-EE-A181-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.25 tolerated(0.25) probably_damaging(0.996) TCGA-EE-A181-06 20 13894461 13894461 G A SEL1L2 Silent p.S172S 0.37 TCGA-EE-A181-06 20 1600560 1600560 G A SIRPB1 Missense_Mutation p.P11S 0.11 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 20 1616841 1616841 G A SIRPG Silent p.A247A 0.14 TCGA-EE-A181-06 20 16712355 16712355 T G SNRPB2 Missense_Mutation p.I3S 0.13 deleterious(0.01) possibly_damaging(0.477) TCGA-EE-A181-06 20 17475281 17475281 T C BFSP1 Missense_Mutation p.Y479C 0.13 deleterious(0) possibly_damaging(0.906) TCGA-EE-A181-06 20 18511414 18511414 C T SEC23B Silent p.F400F 0.13 TCGA-EE-A181-06 20 18794539 18794539 C T SCP2D1 Missense_Mutation p.S27L 0.19 tolerated(0.42) benign(0.005) TCGA-EE-A181-06 20 1961226 1961226 C T PDYN Missense_Mutation p.E170K 0.19 tolerated(0.43) benign(0.015) TCGA-EE-A181-06 20 1961227 1961227 C T PDYN Silent p.K169K 0.10 TCGA-EE-A181-06 20 19665909 19665909 G A SLC24A3 Missense_Mutation p.E410K 0.19 tolerated(0.43) benign(0.138) TCGA-EE-A181-06 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.14 deleterious(0.03) benign(0.256) TCGA-EE-A181-06 20 20246114 20246114 G A C20orf26 Intron 0.15 TCGA-EE-A181-06 20 23066320 23066320 G A CD93 Silent p.S170S 0.12 TCGA-EE-A181-06 20 23432524 23432524 C T CST11 Missense_Mutation p.E88K 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 20 23667728 23667728 C T CST4 Silent p.Q113Q 0.16 TCGA-EE-A181-06 20 2572993 2572993 A G TMC2 Missense_Mutation p.K291R 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 20 2621818 2621818 G A TMC2 Missense_Mutation p.D848N 0.18 tolerated(0.21) benign(0.103) TCGA-EE-A181-06 20 29976964 29976964 C T DEFB119 Missense_Mutation p.R44Q 0.33 tolerated(0.66) benign(0.001) TCGA-EE-A181-06 20 3002824 3002824 C T PTPRA Missense_Mutation p.A429V 0.17 deleterious(0.01) benign(0.038) TCGA-EE-A181-06 20 30028468 30028468 C T DEFB123 5'UTR 0.13 TCGA-EE-A181-06 20 30125987 30125987 C T HM13 Silent p.F96F 0.11 TCGA-EE-A181-06 20 30433048 30433048 C T FOXS1 Missense_Mutation p.D100N 0.18 tolerated(1) probably_damaging(0.997) TCGA-EE-A181-06 20 30686817 30686817 C T HCK Silent p.F419F 0.16 TCGA-EE-A181-06 20 30745606 30745606 C T TM9SF4 Missense_Mutation p.P447S 0.35 tolerated(0.4) benign(0.006) TCGA-EE-A181-06 20 30784184 30784184 G A PLAGL2 3'UTR 0.22 TCGA-EE-A181-06 20 30898237 30898237 C T KIF3B Silent p.F219F 0.17 TCGA-EE-A181-06 20 31021701 31021701 C T ASXL1 Missense_Mutation p.P567L 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 20 31395599 31395599 G A DNMT3B Missense_Mutation p.V818M 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 20 31631162 31631162 G A BPIFB6 Missense_Mutation p.D440N 0.16 tolerated(0.28) benign(0.023) TCGA-EE-A181-06 20 31671441 31671441 G A BPIFB4 Silent p.R146R 0.18 TCGA-EE-A181-06 20 31692663 31692663 C T BPIFB4 Silent p.F576F 0.18 TCGA-EE-A181-06 20 31996540 31996540 A T SNTA1 Silent p.L464L 0.08 TCGA-EE-A181-06 20 32224460 32224460 T C CBFA2T2 Missense_Mutation p.F424L 0.20 tolerated(0.22) benign(0.009) TCGA-EE-A181-06 20 32298409 32298409 G A PXMP4 Silent p.F109F 0.11 TCGA-EE-A181-06 20 33759945 33759945 C T PROCR 5'UTR 0.18 TCGA-EE-A181-06 20 33876305 33876305 G C FAM83C Missense_Mutation p.F255L 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 20 34797712 34797712 C T EPB41L1 Silent p.F657F 0.21 TCGA-EE-A181-06 20 35240525 35240525 C T C20orf24 Missense_Mutation p.R111C 0.23 deleterious_low_confidence(0.05) benign(0) TCGA-EE-A181-06 20 36940320 36940320 G A BPI Missense_Mutation p.R198Q 0.15 tolerated(0.14) benign(0.186) TCGA-EE-A181-06 20 3759628 3759628 G T SPEF1 Missense_Mutation p.P130T 0.31 tolerated(0.44) benign(0.009) TCGA-EE-A181-06 20 377146 377146 C T TRIB3 Missense_Mutation p.R297C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 20 39788792 39788792 C T PLCG1 Missense_Mutation p.R171C 0.21 deleterious(0.02) benign(0.002) TCGA-EE-A181-06 20 39978903 39978903 C T LPIN3 Missense_Mutation p.T323I 0.17 tolerated(0.24) benign(0.001) TCGA-EE-A181-06 20 39978904 39978904 C T LPIN3 Silent p.T323T 0.17 TCGA-EE-A181-06 20 39991483 39991483 C T EMILIN3 Silent p.G242G 0.30 TCGA-EE-A181-06 20 40033758 40033758 G A CHD6 Silent p.P2541P 0.34 TCGA-EE-A181-06 20 40034031 40034031 G A CHD6 Silent p.L2450L 0.29 TCGA-EE-A181-06 20 40081527 40081527 G A CHD6 Missense_Mutation p.S1059L 0.15 deleterious(0.01) possibly_damaging(0.761) TCGA-EE-A181-06 20 40827919 40827919 C T PTPRT Missense_Mutation p.E818K 0.16 deleterious(0.03) benign(0.039) TCGA-EE-A181-06 20 40877427 40877427 C T PTPRT Missense_Mutation p.E738K 0.32 tolerated(0.09) benign(0.339) TCGA-EE-A181-06 20 40944429 40944429 C T PTPRT Nonsense_Mutation p.W691* 0.15 TCGA-EE-A181-06 20 41385139 41385139 C T PTPRT Silent p.G274G 0.22 TCGA-EE-A181-06 20 42693471 42693471 G A TOX2 Missense_Mutation p.A312T 0.10 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A181-06 20 42979373 42979373 A C R3HDML Missense_Mutation p.S235R 0.32 tolerated(0.15) benign(0.031) TCGA-EE-A181-06 20 43142616 43142616 G A SERINC3 Silent p.S35S 0.17 TCGA-EE-A181-06 20 43246937 43246937 G A PKIG Missense_Mutation p.E55K 0.15 tolerated(0.46) possibly_damaging(0.575) TCGA-EE-A181-06 20 43850541 43850541 C T SEMG2 Silent p.L90L 0.14 TCGA-EE-A181-06 20 43929961 43929961 C T MATN4 Missense_Mutation p.A256T 0.23 benign(0.003) TCGA-EE-A181-06 20 44054367 44054367 C T PIGT Silent p.L546L 0.29 TCGA-EE-A181-06 20 44279156 44279156 C T WFDC11 Silent p.R28R 0.11 TCGA-EE-A181-06 20 44692186 44692186 G A NCOA5 Silent p.I321I 0.18 TCGA-EE-A181-06 20 45355600 45355600 C G SLC2A10 Missense_Mutation p.I462M 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A181-06 20 47733732 47733732 G A STAU1 Silent p.I521I 0.15 TCGA-EE-A181-06 20 47846794 47846794 C G DDX27 Missense_Mutation p.I344M 0.16 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 20 48746086 48746086 G A TMEM189-UBE2V1 Missense_Mutation p.P159S 0.22 tolerated_low_confidence(0.16) probably_damaging(0.932) TCGA-EE-A181-06 20 49551729 49551729 C T DPM1 Silent p.L241L 0.19 TCGA-EE-A181-06 20 49575512 49575512 C T MOCS3 Missense_Mutation p.P45S 0.25 tolerated(0.72) benign(0.002) TCGA-EE-A181-06 20 50140414 50140414 G A NFATC2 Silent p.I122I 0.25 TCGA-EE-A181-06 20 50406949 50406949 G A SALL4 Silent p.I691I 0.16 TCGA-EE-A181-06 20 50408058 50408058 C T SALL4 Missense_Mutation p.V322M 0.16 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A181-06 20 51870346 51870346 G A TSHZ2 Missense_Mutation p.E117K 0.22 tolerated(0.43) possibly_damaging(0.475) TCGA-EE-A181-06 20 5294653 5294653 C T PROKR2 Nonsense_Mutation p.W121* 0.17 TCGA-EE-A181-06 20 54824480 54824480 C T MC3R Missense_Mutation p.T194I 0.40 tolerated(0.16) possibly_damaging(0.692) TCGA-EE-A181-06 20 56093640 56093640 C T CTCFL Intron 0.22 TCGA-EE-A181-06 20 57415441 57415441 G A RP4-806M20.3 5'Flank 0.18 TCGA-EE-A181-06 20 60904097 60904097 G A LAMA5 Missense_Mutation p.S1417F 0.16 benign(0.034) TCGA-EE-A181-06 20 61572944 61572944 C T GID8 Silent p.N30N 0.12 TCGA-EE-A181-06 20 61576133 61576133 C T GID8 Missense_Mutation p.R186C 0.32 deleterious(0.04) benign(0.017) TCGA-EE-A181-06 20 61833700 61833700 G A YTHDF1 Missense_Mutation p.S531F 0.13 deleterious(0) probably_damaging(0.982) TCGA-EE-A181-06 20 62598817 62598817 G A ZNF512B Missense_Mutation p.P61S 0.36 tolerated_low_confidence(0.07) benign(0.011) TCGA-EE-A181-06 20 62729677 62729677 C T OPRL1 Missense_Mutation p.P213L 0.15 tolerated(0.07) probably_damaging(0.972) TCGA-EE-A181-06 20 8130986 8130986 G A PLCB1 Missense_Mutation p.G49R 0.25 deleterious(0) possibly_damaging(0.776) TCGA-EE-A181-06 20 8678311 8678311 C T PLCB1 Missense_Mutation p.R350C 0.18 deleterious(0) probably_damaging(0.982) TCGA-EE-A181-06 20 8741080 8741080 G A PLCB1 Missense_Mutation p.E895K 0.14 tolerated(0.13) benign(0.032) TCGA-EE-A181-06 20 8755294 8755294 G A PLCB1 Silent p.Q1013Q 0.11 TCGA-EE-A181-06 20 9365044 9365044 C T PLCB4 Silent p.L350L 0.23 TCGA-EE-A181-06 20 9391704 9391704 C T PLCB4 Nonsense_Mutation p.Q662* 0.12 TCGA-EE-A181-06 20 9449315 9449315 G A PLCB4 Missense_Mutation p.E1104K 0.17 deleterious(0.01) possibly_damaging(0.763) TCGA-EE-A181-06 20 9510290 9510290 G A LAMP5 Silent p.E222E 0.17 TCGA-EE-A181-06 20 9525085 9525085 C T PAK7 Silent p.R600R 0.32 TCGA-EE-A181-06 20 9561213 9561213 G A PAK7 Missense_Mutation p.S190F 0.32 deleterious_low_confidence(0.02) benign(0.362) TCGA-EE-A181-06 21 10920118 10920118 C T TPTE Missense_Mutation p.S379N 0.13 deleterious(0.01) possibly_damaging(0.641) TCGA-EE-A181-06 21 11058197 11058197 G A BAGE2 RNA 0.18 TCGA-EE-A181-06 21 15535790 15535790 G A LIPI Missense_Mutation p.P340L 0.25 tolerated(0.09) benign(0.311) TCGA-EE-A181-06 21 15592007 15592007 C T RBM11 Missense_Mutation p.R74C 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A181-06 21 15858346 15858346 C T SAMSN1 Missense_Mutation p.D405N 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 21 15870776 15870776 G A SAMSN1 Silent p.F370F 0.19 TCGA-EE-A181-06 21 31655091 31655091 T G KRTAP24-1 Missense_Mutation p.N54H 0.32 tolerated(0.09) probably_damaging(0.973) TCGA-EE-A181-06 21 31864169 31864169 C T KRTAP19-3 Missense_Mutation p.G36D 0.23 tolerated_low_confidence(0.92) unknown(0) TCGA-EE-A181-06 21 32253626 32253626 C T KRTAP11-1 Missense_Mutation p.R73Q 0.28 tolerated(0.64) benign(0.005) TCGA-EE-A181-06 21 32253760 32253760 C T KRTAP11-1 Silent p.T28T 0.29 TCGA-EE-A181-06 21 32492714 32492714 G A TIAM1 Missense_Mutation p.P1583L 0.37 deleterious_low_confidence(0.02) benign(0.133) TCGA-EE-A181-06 21 32492715 32492715 G A TIAM1 Missense_Mutation p.P1583S 0.37 tolerated_low_confidence(0.27) benign(0.003) TCGA-EE-A181-06 21 32575283 32575283 G A TIAM1 Silent p.L812L 0.21 TCGA-EE-A181-06 21 36081723 36081723 G A CLIC6 Missense_Mutation p.E596K 0.20 deleterious(0) possibly_damaging(0.621) TCGA-EE-A181-06 21 37583878 37583878 G A DOPEY2 Missense_Mutation p.D237N 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 21 38095380 38095380 G A SIM2 Missense_Mutation p.M164I 0.30 deleterious(0.02) possibly_damaging(0.854) TCGA-EE-A181-06 21 38997399 38997399 G A KCNJ6 3'UTR 0.19 TCGA-EE-A181-06 21 39755561 39755561 G A ERG Missense_Mutation p.H409Y 0.31 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A181-06 21 40191548 40191548 C T ETS2 Silent p.F311F 0.29 TCGA-EE-A181-06 21 41385037 41385037 G A DSCAM Missense_Mutation p.S1988F 0.18 deleterious_low_confidence(0) benign(0.014) TCGA-EE-A181-06 21 41725487 41725487 A T DSCAM Missense_Mutation p.I280N 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 21 43325844 43325844 G A C2CD2 Missense_Mutation p.S474F 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A181-06 21 44117553 44117553 C T PDE9A Intron 0.25 TCGA-EE-A181-06 21 45798946 45798946 G A TRPM2 Missense_Mutation p.D361N 0.25 tolerated(0.05) possibly_damaging(0.79) TCGA-EE-A181-06 21 46313432 46313432 G A ITGB2 Missense_Mutation p.H371Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A181-06 21 46911158 46911158 G A COL18A1 Missense_Mutation p.G876E 0.25 probably_damaging(0.983) TCGA-EE-A181-06 21 48019252 48019252 G A S100B 3'UTR 0.25 TCGA-EE-A181-06 22 17669312 17669312 G A CECR1 Missense_Mutation p.S333F 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A181-06 22 17684577 17684577 A T CECR1 Missense_Mutation p.I210N 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A181-06 22 18031748 18031748 C T CECR2 Missense_Mutation p.S1416L 0.38 tolerated_low_confidence(0.2) benign(0.025) TCGA-EE-A181-06 22 19163960 19163960 C T SLC25A1 Silent p.Q265Q 0.11 TCGA-EE-A181-06 22 19870984 19870984 C T TXNRD2 Missense_Mutation p.G317D 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 22 20073939 20073939 C T DGCR8 Silent p.L151L 0.17 TCGA-EE-A181-06 22 20073940 20073940 C T DGCR8 Missense_Mutation p.L152F 0.18 tolerated_low_confidence(0.33) benign(0.1) TCGA-EE-A181-06 22 20132801 20132801 C T ZDHHC8 Intron 0.19 TCGA-EE-A181-06 22 21377300 21377300 C T P2RX6 Missense_Mutation p.P178L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 22 22893196 22893196 G A PRAME Missense_Mutation p.R113C 0.16 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A181-06 22 24579502 24579502 C T SUSD2 Silent p.S109S 0.18 TCGA-EE-A181-06 22 25294236 25294236 G A SGSM1 Missense_Mutation p.E829K 0.26 tolerated(0.21) benign(0.196) TCGA-EE-A181-06 22 26707866 26707866 C T SEZ6L Missense_Mutation p.A605V 0.14 tolerated(0.36) probably_damaging(0.962) TCGA-EE-A181-06 22 26707867 26707867 C T SEZ6L Silent p.A605A 0.14 TCGA-EE-A181-06 22 26829820 26829820 G A ASPHD2 Missense_Mutation p.R80K 0.21 tolerated_low_confidence(0.32) benign(0.006) TCGA-EE-A181-06 22 27026442 27026442 C T CRYBA4 Silent p.I194I 0.19 TCGA-EE-A181-06 22 29383048 29383048 C T ZNRF3 Intron 0.14 TCGA-EE-A181-06 22 29445491 29445491 C T ZNRF3 Missense_Mutation p.S441F 0.18 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A181-06 22 29445492 29445492 C T ZNRF3 Silent p.S441S 0.18 TCGA-EE-A181-06 22 29656401 29656401 C T RHBDD3 Silent p.E299E 0.58 TCGA-EE-A181-06 22 29927911 29927911 G A THOC5 Silent p.D252D 0.16 TCGA-EE-A181-06 22 30639958 30639958 C T LIF Silent p.T97T 0.17 TCGA-EE-A181-06 22 30659991 30659991 C T OSM Missense_Mutation p.E214K 0.24 tolerated(0.29) benign(0.003) TCGA-EE-A181-06 22 30660202 30660202 G A OSM Silent p.I143I 0.14 TCGA-EE-A181-06 22 30867968 30867968 G C SEC14L3 5'UTR 0.20 TCGA-EE-A181-06 22 30891765 30891765 G A SEC14L4 Intron 0.47 TCGA-EE-A181-06 22 30891766 30891766 G A SEC14L4 Intron 0.46 TCGA-EE-A181-06 22 31333864 31333864 T C MORC2 Missense_Mutation p.Y374C 0.21 deleterious(0) probably_damaging(0.926) TCGA-EE-A181-06 22 32275563 32275563 C T DEPDC5 Silent p.F1277F 0.24 TCGA-EE-A181-06 22 32445982 32445982 G A SLC5A1 Missense_Mutation p.R63Q 0.44 deleterious(0.01) benign(0.265) TCGA-EE-A181-06 22 32784016 32784016 G A RTCB Missense_Mutation p.A494V 0.20 tolerated(1) benign(0.006) TCGA-EE-A181-06 22 35478531 35478531 A C ISX Silent p.R84R 0.12 TCGA-EE-A181-06 22 35717964 35717964 C T TOM1 Silent p.A50A 0.38 TCGA-EE-A181-06 22 35717965 35717965 C A TOM1 Missense_Mutation p.L51I 0.36 tolerated(1) benign(0.004) TCGA-EE-A181-06 22 36538042 36538042 C T APOL3 Missense_Mutation p.E139K 0.26 tolerated(0.94) benign(0) TCGA-EE-A181-06 22 36696966 36696966 C T MYH9 Silent p.R923R 0.40 TCGA-EE-A181-06 22 37524624 37524624 C T IL2RB Missense_Mutation p.E390K 0.26 deleterious(0.01) possibly_damaging(0.644) TCGA-EE-A181-06 22 37876305 37876305 C T MFNG Missense_Mutation p.E113K 0.18 tolerated(0.61) probably_damaging(0.928) TCGA-EE-A181-06 22 37876306 37876306 C T MFNG Silent p.A112A 0.19 TCGA-EE-A181-06 22 37964152 37964152 C T CDC42EP1 Silent p.P167P 0.19 TCGA-EE-A181-06 22 37964199 37964199 C T CDC42EP1 Missense_Mutation p.S183F 0.24 deleterious(0.02) possibly_damaging(0.898) TCGA-EE-A181-06 22 38061867 38061867 T C PDXP Silent p.L294L 0.21 TCGA-EE-A181-06 22 38121452 38121452 C T TRIOBP Silent p.S963S 0.24 TCGA-EE-A181-06 22 38340449 38340449 C T C22orf23 Missense_Mutation p.G186E 0.34 tolerated(0.09) possibly_damaging(0.597) TCGA-EE-A181-06 22 38469033 38469033 C T PICK1 Silent p.L239L 0.10 TCGA-EE-A181-06 22 38641966 38641966 G A TMEM184B Silent p.F111F 0.17 TCGA-EE-A181-06 22 39427710 39427710 G A APOBEC3D Silent p.E258E 0.20 TCGA-EE-A181-06 22 40015314 40015314 G A CACNA1I Splice_Site p.X161_splice 0.27 TCGA-EE-A181-06 22 40417688 40417688 C T FAM83F Missense_Mutation p.P392S 0.22 tolerated(0.11) benign(0.024) TCGA-EE-A181-06 22 40804674 40804674 C T SGSM3 Missense_Mutation p.S609F 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 22 41175075 41175075 T C SLC25A17 Missense_Mutation p.K130R 0.40 tolerated(0.13) probably_damaging(1) TCGA-EE-A181-06 22 41739486 41739486 C - ZC3H7B Frame_Shift_Del p.G456Afs*33 0.16 TCGA-EE-A181-06 22 42296418 42296418 C T SREBF2 Silent p.S941S 0.22 TCGA-EE-A181-06 22 42390676 42390677 TT - SEPT3 Frame_Shift_Del p.Y324Qfs*7 0.12 TCGA-EE-A181-06 22 42525764 42525764 G A CYP2D6 Silent p.L110L 0.15 TCGA-EE-A181-06 22 43195138 43195138 G A ARFGAP3 Silent p.P480P 0.10 TCGA-EE-A181-06 22 43243540 43243540 A C ARFGAP3 Silent p.G56G 0.30 TCGA-EE-A181-06 22 45258226 45258226 C T PRR5-ARHGAP8 Silent p.I561I 0.15 TCGA-EE-A181-06 22 45312175 45312175 G A PHF21B Silent p.I183I 0.34 TCGA-EE-A181-06 22 46085626 46085626 C A ATXN10 Missense_Mutation p.L51M 0.24 tolerated(0.07) possibly_damaging(0.472) TCGA-EE-A181-06 22 46614225 46614225 C T PPARA Silent p.I145I 0.39 TCGA-EE-A181-06 22 46653000 46653000 C T PKDREJ Missense_Mutation p.D2074N 0.18 tolerated(0.15) possibly_damaging(0.67) TCGA-EE-A181-06 22 46654651 46654651 A T PKDREJ Missense_Mutation p.H1523Q 0.35 tolerated(0.58) benign(0.003) TCGA-EE-A181-06 22 50280444 50280444 C T ZBED4 Missense_Mutation p.A1045V 0.16 tolerated(1) benign(0.001) TCGA-EE-A181-06 22 50942286 50942286 G A LMF2 Missense_Mutation p.S589F 0.58 tolerated(0.42) benign(0.049) TCGA-EE-A181-06 22 51045390 51045390 C T MAPK8IP2 Silent p.S757S 0.15 TCGA-EE-A181-06 2 100625353 100625353 C T AFF3 Missense_Mutation p.R57Q 0.31 tolerated(0.27) possibly_damaging(0.825) TCGA-EE-A181-06 2 101089982 101089982 C T NMS Missense_Mutation p.P55L 0.16 tolerated(0.25) benign(0.001) TCGA-EE-A181-06 2 102805703 102805703 G A IL1RL2 Missense_Mutation p.D76N 0.42 tolerated(0.2) benign(0.015) TCGA-EE-A181-06 2 103040388 103040388 C G IL18RAP Nonsense_Mutation p.S63* 0.40 TCGA-EE-A181-06 2 103318920 103318920 C T SLC9A2 Nonsense_Mutation p.R602* 0.22 TCGA-EE-A181-06 2 103325024 103325024 G A SLC9A2 3'UTR 0.39 TCGA-EE-A181-06 2 103340299 103340299 G A MFSD9 Missense_Mutation p.P166L 0.25 tolerated(0.07) benign(0.178) TCGA-EE-A181-06 2 103340300 103340300 G A MFSD9 Missense_Mutation p.P166S 0.26 tolerated(0.09) benign(0.305) TCGA-EE-A181-06 2 105858315 105858315 G A GPR45 5'UTR 0.47 TCGA-EE-A181-06 2 105859087 105859087 G A GPR45 Missense_Mutation p.D258N 0.39 tolerated(0.06) benign(0.179) TCGA-EE-A181-06 2 107459876 107459876 C T ST6GAL2 Silent p.L186L 0.33 TCGA-EE-A181-06 2 107459924 107459924 C T ST6GAL2 Silent p.R170R 0.10 TCGA-EE-A181-06 2 108477238 108477238 C T RGPD4 Missense_Mutation p.S592F 0.18 deleterious(0.01) benign(0) TCGA-EE-A181-06 2 108487579 108487579 C T RGPD4 Missense_Mutation p.P1040L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 2 108507242 108507242 C T RGPD4 3'UTR 0.33 TCGA-EE-A181-06 2 108863729 108863729 C T SULT1C3 Missense_Mutation p.P27S 0.20 deleterious(0.03) possibly_damaging(0.709) TCGA-EE-A181-06 2 109463278 109463278 C T CCDC138 Missense_Mutation p.P470S 0.34 tolerated(1) benign(0.012) TCGA-EE-A181-06 2 111551231 111551231 G A ACOXL Missense_Mutation p.G55E 0.17 deleterious(0.02) possibly_damaging(0.52) TCGA-EE-A181-06 2 111666426 111666426 G A ACOXL Silent p.Q283Q 0.45 TCGA-EE-A181-06 2 111851138 111851138 C T ACOXL Intron 0.36 TCGA-EE-A181-06 2 113588049 113588049 G A IL1B Silent p.F233F 0.35 TCGA-EE-A181-06 2 118696639 118696639 G A CCDC93 Missense_Mutation p.T524I 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 118766198 118766198 A G CCDC93 Silent p.L27L 0.33 TCGA-EE-A181-06 2 119727718 119727718 C T MARCO Silent p.V76V 0.23 TCGA-EE-A181-06 2 119739064 119739064 C T MARCO Silent p.F282F 0.32 TCGA-EE-A181-06 2 119750850 119750850 G A MARCO Missense_Mutation p.G468E 0.36 deleterious(0) unknown(0) TCGA-EE-A181-06 2 120409610 120409610 C T PCDP1 Silent p.F793F 0.14 TCGA-EE-A181-06 2 121036296 121036296 T A RALB Missense_Mutation p.M19K 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 2 121712857 121712857 G A GLI2 Missense_Mutation p.G165D 0.46 deleterious(0.04) benign(0.025) TCGA-EE-A181-06 2 128346114 128346114 G A MYO7B Missense_Mutation p.G613E 0.27 tolerated(0.18) benign(0.243) TCGA-EE-A181-06 2 128467156 128467156 C T WDR33 Missense_Mutation p.G1158E 0.22 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-EE-A181-06 2 128467267 128467267 C A WDR33 Nonsense_Mutation p.G1158* 0.27 TCGA-EE-A181-06 2 128479482 128479482 C G WDR33 Missense_Mutation p.E533D 0.17 tolerated_low_confidence(0.48) unknown(0) TCGA-EE-A181-06 2 130738117 130738117 G A RAB6C Silent p.R143R 0.12 TCGA-EE-A181-06 2 131520273 131520273 C T AMER3 Silent p.L210L 0.43 TCGA-EE-A181-06 2 131520728 131520728 C T AMER3 Silent p.G361G 0.43 TCGA-EE-A181-06 2 132257781 132257781 T G AC093838.4 RNA 0.56 TCGA-EE-A181-06 2 132290261 132290261 C T CCDC74A Silent p.I261I 0.13 TCGA-EE-A181-06 2 133403776 133403776 G A LYPD1 Missense_Mutation p.P90S 0.26 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-EE-A181-06 2 135738578 135738578 C T MAP3K19 Missense_Mutation p.G1245R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 135745582 135745582 C T MAP3K19 Missense_Mutation p.R287K 0.12 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A181-06 2 135888228 135888228 C T RAB3GAP1 Silent p.I391I 0.38 TCGA-EE-A181-06 2 137814319 137814319 G A THSD7B Missense_Mutation p.E157K 0.28 tolerated(0.52) benign(0.316) TCGA-EE-A181-06 2 141130628 141130628 C T LRP1B Missense_Mutation p.D3573N 0.21 possibly_damaging(0.822) TCGA-EE-A181-06 2 141130635 141130635 C T LRP1B Nonsense_Mutation p.W3570* 0.40 TCGA-EE-A181-06 2 141242937 141242937 C T LRP1B Missense_Mutation p.D3134N 0.30 possibly_damaging(0.539) TCGA-EE-A181-06 2 141459397 141459397 G A LRP1B Missense_Mutation p.S2107F 0.19 possibly_damaging(0.485) TCGA-EE-A181-06 2 141641546 141641546 G A LRP1B Missense_Mutation p.P1337S 0.21 possibly_damaging(0.641) TCGA-EE-A181-06 2 141771293 141771293 A G LRP1B Silent p.L738L 0.19 TCGA-EE-A181-06 2 141986896 141986896 G A LRP1B Missense_Mutation p.H236Y 0.12 benign(0.152) TCGA-EE-A181-06 2 152512872 152512872 T C NEB Missense_Mutation p.Q2097R 0.24 probably_damaging(0.997) TCGA-EE-A181-06 2 152548448 152548448 C T NEB Missense_Mutation p.G714E 0.48 probably_damaging(0.961) TCGA-EE-A181-06 2 155566249 155566249 C T KCNJ3 Silent p.P279P 0.25 TCGA-EE-A181-06 2 155711304 155711304 C T KCNJ3 Missense_Mutation p.P329S 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A181-06 2 158178150 158178150 C T ERMN Missense_Mutation p.R176Q 0.31 tolerated(1) benign(0.009) TCGA-EE-A181-06 2 158991453 158991453 T G UPP2 3'UTR 0.21 TCGA-EE-A181-06 2 160604951 160604951 C A MARCH7 Missense_Mutation p.P384T 0.12 tolerated(0.26) benign(0.119) TCGA-EE-A181-06 2 160673493 160673493 C T LY75-CD302 Missense_Mutation p.E1402K 0.37 tolerated(0.4) probably_damaging(0.953) TCGA-EE-A181-06 2 160982960 160982960 T G ITGB6 Missense_Mutation p.T605P 0.28 deleterious(0.03) benign(0.323) TCGA-EE-A181-06 2 162820767 162820767 C T SLC4A10 Silent p.G995G 0.18 TCGA-EE-A181-06 2 163044724 163044724 C T FAP Missense_Mutation p.R590Q 0.16 deleterious(0.01) possibly_damaging(0.732) TCGA-EE-A181-06 2 164466983 164466983 G A FIGN Silent p.S453S 0.44 TCGA-EE-A181-06 2 1651988 1651988 C T PXDN Silent p.L1188L 0.19 TCGA-EE-A181-06 2 165365284 165365284 C T GRB14 Missense_Mutation p.G299R 0.30 deleterious(0.05) possibly_damaging(0.665) TCGA-EE-A181-06 2 165381533 165381533 G A GRB14 Missense_Mutation p.S220F 0.15 deleterious(0.01) benign(0.321) TCGA-EE-A181-06 2 165551016 165551016 C T COBLL1 Silent p.Q1000Q 0.22 TCGA-EE-A181-06 2 166011076 166011076 C T SCN3A Silent p.V422V 0.21 TCGA-EE-A181-06 2 166012313 166012313 G A SCN3A Nonsense_Mutation p.R378* 0.17 TCGA-EE-A181-06 2 166020975 166020975 C T SCN3A Missense_Mutation p.G177R 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 2 166179688 166179688 C T SCN2A Missense_Mutation p.S565F 0.25 tolerated(0.14) probably_damaging(0.974) TCGA-EE-A181-06 2 166615345 166615345 G A GALNT3 Missense_Mutation p.S368F 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 2 166900335 166900335 G A SCN1A Silent p.S629S 0.17 TCGA-EE-A181-06 2 167055571 167055571 G A SCN9A Missense_Mutation p.R1849C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 167143021 167143021 C T SCN9A Missense_Mutation p.R476K 0.37 tolerated(0.13) possibly_damaging(0.812) TCGA-EE-A181-06 2 167284437 167284437 G A SCN7A Missense_Mutation p.S905F 0.21 tolerated(1) benign(0.227) TCGA-EE-A181-06 2 168099166 168099166 G A XIRP2 Missense_Mutation p.E422K 0.37 possibly_damaging(0.904) TCGA-EE-A181-06 2 168105040 168105040 C T XIRP2 Missense_Mutation p.L2380F 0.17 benign(0.117) TCGA-EE-A181-06 2 168105475 168105475 C T XIRP2 Missense_Mutation p.P2525S 0.13 benign(0.37) TCGA-EE-A181-06 2 168107021 168107021 G A XIRP2 Missense_Mutation p.G3040E 0.11 benign(0.082) TCGA-EE-A181-06 2 169792783 169792783 C T ABCB11 Missense_Mutation p.G924E 0.38 deleterious(0.01) possibly_damaging(0.558) TCGA-EE-A181-06 2 169874614 169874614 G A ABCB11 Nonsense_Mutation p.R8* 0.34 TCGA-EE-A181-06 2 170009333 170009333 C T LRP2 Missense_Mutation p.G4146E 0.20 probably_damaging(0.997) TCGA-EE-A181-06 2 170022486 170022486 C T LRP2 Missense_Mutation p.G3905D 0.13 benign(0.315) TCGA-EE-A181-06 2 170058349 170058349 G A LRP2 Silent p.T2747T 0.32 TCGA-EE-A181-06 2 170093615 170093615 C T LRP2 Missense_Mutation p.M1563I 0.24 benign(0) TCGA-EE-A181-06 2 170506900 170506900 C T CCDC173 Missense_Mutation p.R364K 0.18 tolerated(1) benign(0.002) TCGA-EE-A181-06 2 170929938 170929940 GAA - UBR3 In_Frame_Del p.E1677del 0.33 TCGA-EE-A181-06 2 171264304 171264304 C T MYO3B Missense_Mutation p.S867L 0.10 deleterious(0) probably_damaging(0.939) TCGA-EE-A181-06 2 174094427 174094427 C T MLTK Missense_Mutation p.S333F 0.19 deleterious(0) possibly_damaging(0.526) TCGA-EE-A181-06 2 175260422 175260422 G A CIR1 5'UTR 0.21 TCGA-EE-A181-06 2 175665002 175665002 C T CHN1 Missense_Mutation p.E408K 0.25 tolerated(0.43) probably_damaging(0.959) TCGA-EE-A181-06 2 179214032 179214032 C T OSBPL6 Missense_Mutation p.P382S 0.41 tolerated(0.37) probably_damaging(0.948) TCGA-EE-A181-06 2 179407867 179407867 C T TTN Missense_Mutation p.R32278K 0.38 TCGA-EE-A181-06 2 179411776 179411776 G T TTN Missense_Mutation p.S31492R 0.32 TCGA-EE-A181-06 2 179411777 179411777 C T TTN Missense_Mutation p.S31492N 0.32 TCGA-EE-A181-06 2 179413427 179413427 C T TTN Missense_Mutation p.D30976N 0.18 TCGA-EE-A181-06 2 179419750 179419750 T A TTN Missense_Mutation p.K29479I 0.30 TCGA-EE-A181-06 2 179430436 179430436 C T TTN Missense_Mutation p.G26808D 0.35 TCGA-EE-A181-06 2 179433209 179433209 C T TTN Missense_Mutation p.E25884K 0.36 TCGA-EE-A181-06 2 179438574 179438574 C T TTN Silent p.R24095R 0.29 TCGA-EE-A181-06 2 179443704 179443704 C T TTN Missense_Mutation p.D22685N 0.35 TCGA-EE-A181-06 2 179462773 179462773 C T TTN Missense_Mutation p.E19042K 0.12 TCGA-EE-A181-06 2 179542556 179542556 C T TTN Silent p.E11361E 0.15 TCGA-EE-A181-06 2 179552865 179552865 C T TTN Missense_Mutation p.E10762K 0.33 TCGA-EE-A181-06 2 179569925 179569925 G C TTN Missense_Mutation p.S9860R 0.32 TCGA-EE-A181-06 2 179569999 179569999 C T TTN Missense_Mutation p.E9836K 0.18 TCGA-EE-A181-06 2 179575397 179575397 C T TTN Missense_Mutation p.G9476E 0.12 TCGA-EE-A181-06 2 179576002 179576002 C T TTN Missense_Mutation p.D9321N 0.17 TCGA-EE-A181-06 2 179585326 179585326 G A TTN Silent p.L7721L 0.37 TCGA-EE-A181-06 2 179588245 179588245 C T TTN Silent p.L7194L 0.38 TCGA-EE-A181-06 2 179597628 179597628 C T TTN Silent p.G5425G 0.36 TCGA-EE-A181-06 2 179598013 179598013 G A TTN Missense_Mutation p.S5336F 0.42 TCGA-EE-A181-06 2 179599168 179599168 G A TTN Missense_Mutation p.S5128F 0.13 TCGA-EE-A181-06 2 179604168 179604168 C T TTN Missense_Mutation p.G4598S 0.26 TCGA-EE-A181-06 2 179604834 179604834 C T TTN Missense_Mutation p.D4376N 0.32 TCGA-EE-A181-06 2 179610788 179610788 C T TTN Intron 0.29 TCGA-EE-A181-06 2 179614661 179614661 C T TTN Intron 0.27 TCGA-EE-A181-06 2 179616237 179616237 C T TTN Intron 0.30 TCGA-EE-A181-06 2 179642503 179642503 C T TTN Missense_Mutation p.E1470K 0.35 TCGA-EE-A181-06 2 179647698 179647698 C T TTN Missense_Mutation p.E979K 0.28 TCGA-EE-A181-06 2 179702159 179702159 C T CCDC141 Missense_Mutation p.E1263K 0.30 tolerated(0.14) benign(0.202) TCGA-EE-A181-06 2 17997936 17997936 C T MSGN1 Missense_Mutation p.P51S 0.41 tolerated(0.28) benign(0.03) TCGA-EE-A181-06 2 18113837 18113837 C T KCNS3 3'UTR 0.41 TCGA-EE-A181-06 2 183011871 183011871 C T PDE1A Missense_Mutation p.D525N 0.13 tolerated(0.36) benign(0.001) TCGA-EE-A181-06 2 183050775 183050775 C T PDE1A Missense_Mutation p.D470N 0.25 deleterious(0.05) benign(0.088) TCGA-EE-A181-06 2 183624032 183624032 A T DNAJC10 Missense_Mutation p.R715W 0.15 deleterious(0) probably_damaging(0.98) TCGA-EE-A181-06 2 185800767 185800767 C T ZNF804A Missense_Mutation p.S215F 0.14 deleterious(0) probably_damaging(0.986) TCGA-EE-A181-06 2 185803842 185803842 C T ZNF804A 3'UTR 0.23 TCGA-EE-A181-06 2 187626805 187626805 G A FAM171B Missense_Mutation p.R579Q 0.44 tolerated(0.12) probably_damaging(0.962) TCGA-EE-A181-06 2 187627060 187627060 G A FAM171B Missense_Mutation p.G664E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 18764140 18764140 G A NT5C1B Missense_Mutation p.H399Y 0.39 deleterious(0.02) possibly_damaging(0.759) TCGA-EE-A181-06 2 189868843 189868843 G A COL3A1 Missense_Mutation p.G933R 0.12 probably_damaging(0.999) TCGA-EE-A181-06 2 189901342 189901342 C T COL5A2 Silent p.Q1371Q 0.18 TCGA-EE-A181-06 2 191069876 191069876 A C HIBCH Missense_Mutation p.F376L 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 2 191524650 191524650 C T NAB1 Missense_Mutation p.R250W 0.22 deleterious(0.03) benign(0.003) TCGA-EE-A181-06 2 191919251 191919251 C T STAT4 Missense_Mutation p.E406K 0.20 deleterious(0) probably_damaging(0.922) TCGA-EE-A181-06 2 1926476 1926476 C T MYT1L Missense_Mutation p.M355I 0.29 tolerated_low_confidence(0.4) benign(0.003) TCGA-EE-A181-06 2 196545140 196545140 C T SLC39A10 Missense_Mutation p.S125L 0.34 deleterious(0.05) benign(0.388) TCGA-EE-A181-06 2 196720612 196720612 C T DNAH7 Missense_Mutation p.E2840K 0.13 tolerated(0.15) benign(0.047) TCGA-EE-A181-06 2 196746620 196746620 C T DNAH7 Missense_Mutation p.D1954N 0.39 tolerated(0.08) benign(0.443) TCGA-EE-A181-06 2 196759856 196759856 C T DNAH7 Missense_Mutation p.M1580I 0.12 tolerated(0.4) benign(0.096) TCGA-EE-A181-06 2 196825552 196825552 C T DNAH7 Missense_Mutation p.E775K 0.30 tolerated(0.47) benign(0.327) TCGA-EE-A181-06 2 196883959 196883959 C T DNAH7 Silent p.R268R 0.15 TCGA-EE-A181-06 2 196922841 196922841 C T DNAH7 Splice_Site p.X6_splice 0.18 TCGA-EE-A181-06 2 197081767 197081767 T A HECW2 Nonsense_Mutation p.R1487* 0.20 TCGA-EE-A181-06 2 197208412 197208412 C T HECW2 Nonsense_Mutation p.W123* 0.32 TCGA-EE-A181-06 2 198266186 198266186 G A SF3B1 Missense_Mutation p.P812S 0.27 tolerated(0.06) benign(0.089) TCGA-EE-A181-06 2 198327324 198327324 C A COQ10B Missense_Mutation p.P106T 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 1983546 1983546 C T MYT1L Missense_Mutation p.E2K 0.38 deleterious(0.01) unknown(0) TCGA-EE-A181-06 2 200137150 200137150 G A SATB2 Silent p.F662F 0.36 TCGA-EE-A181-06 2 201477495 201477495 C T AOX1 Missense_Mutation p.S476F 0.38 deleterious(0) possibly_damaging(0.76) TCGA-EE-A181-06 2 202483828 202483828 C T ALS2CR11 Missense_Mutation p.R9K 0.15 tolerated(0.77) benign(0.004) TCGA-EE-A181-06 2 206921529 206921529 G A INO80D Silent p.A119A 0.17 TCGA-EE-A181-06 2 207171302 207171302 G A ZDBF2 Missense_Mutation p.E684K 0.19 tolerated(0.13) possibly_damaging(0.692) TCGA-EE-A181-06 2 207174246 207174246 G A ZDBF2 Missense_Mutation p.G1665E 0.30 tolerated(0.33) probably_damaging(0.931) TCGA-EE-A181-06 2 207636625 207636625 C T FASTKD2 Missense_Mutation p.A333V 0.17 tolerated(0.48) possibly_damaging(0.619) TCGA-EE-A181-06 2 207636626 207636626 C T FASTKD2 Silent p.A333A 0.17 TCGA-EE-A181-06 2 208993094 208993094 C T CRYGC Missense_Mutation p.E120K 0.45 tolerated(0.07) benign(0.251) TCGA-EE-A181-06 2 211302518 211302518 G A LANCL1 Missense_Mutation p.P257S 0.27 tolerated(0.16) benign(0.06) TCGA-EE-A181-06 2 21225802 21225802 G A APOB Silent p.F4164F 0.48 TCGA-EE-A181-06 2 21228765 21228765 G A APOB Missense_Mutation p.L3659F 0.36 benign(0.049) TCGA-EE-A181-06 2 21233705 21233705 C T APOB Missense_Mutation p.R2012Q 0.43 benign(0.017) TCGA-EE-A181-06 2 21235262 21235262 G A APOB Missense_Mutation p.S1493F 0.17 benign(0.014) TCGA-EE-A181-06 2 215279197 215279197 C T VWC2L Missense_Mutation p.H94Y 0.29 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A181-06 2 215882755 215882755 G A ABCA12 Missense_Mutation p.P587S 0.48 tolerated(0.51) benign(0.222) TCGA-EE-A181-06 2 215928821 215928821 C T ABCA12 Silent p.R95R 0.42 TCGA-EE-A181-06 2 217281011 217281011 G A SMARCAL1 Missense_Mutation p.M281I 0.18 deleterious(0.01) possibly_damaging(0.491) TCGA-EE-A181-06 2 219206831 219206831 C T PNKD Missense_Mutation p.L249F 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A181-06 2 219559038 219559038 C T STK36 Silent p.V796V 0.18 TCGA-EE-A181-06 2 219603331 219603331 C T TTLL4 Missense_Mutation p.A311V 0.44 tolerated(0.39) benign(0.004) TCGA-EE-A181-06 2 219694767 219694767 C T PRKAG3 Silent p.Q189Q 0.22 TCGA-EE-A181-06 2 219695037 219695037 C T PRKAG3 Silent p.L99L 0.19 TCGA-EE-A181-06 2 220040323 220040323 G A CNPPD1 Missense_Mutation p.H84Y 0.46 deleterious(0.01) probably_damaging(0.926) TCGA-EE-A181-06 2 220088458 220088458 G A ATG9A Missense_Mutation p.P483L 0.18 deleterious(0) possibly_damaging(0.677) TCGA-EE-A181-06 2 220103910 220103910 G A GLB1L Silent p.F322F 0.18 TCGA-EE-A181-06 2 220147598 220147598 C T DNAJB2 Missense_Mutation p.S131F 0.20 tolerated(0.07) benign(0.309) TCGA-EE-A181-06 2 220167060 220167060 G A PTPRN Missense_Mutation p.P265S 0.47 tolerated(0.09) benign(0.019) TCGA-EE-A181-06 2 220167309 220167309 G A PTPRN Silent p.L210L 0.32 TCGA-EE-A181-06 2 220370378 220370378 C T GMPPA Intron 0.44 TCGA-EE-A181-06 2 227920696 227920696 C T COL4A4 Missense_Mutation p.G894E 0.25 unknown(0) TCGA-EE-A181-06 2 227924858 227924858 G A COL4A4 Missense_Mutation p.P720S 0.38 probably_damaging(0.96) TCGA-EE-A181-06 2 228882743 228882743 C T SPHKAP Missense_Mutation p.E943K 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 2 228883615 228883615 G A SPHKAP Missense_Mutation p.S652L 0.18 deleterious(0.01) possibly_damaging(0.576) TCGA-EE-A181-06 2 231683275 231683275 C T CAB39 Silent p.I294I 0.14 TCGA-EE-A181-06 2 231683276 231683276 C T CAB39 Missense_Mutation p.L295F 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 2 233198570 233198570 G A DIS3L2 Silent p.S677S 0.41 TCGA-EE-A181-06 2 233756123 233756123 G A NGEF Missense_Mutation p.S406F 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A181-06 2 233785141 233785141 C T NGEF Silent p.P227P 0.30 TCGA-EE-A181-06 2 234079751 234079751 A C INPP5D Silent p.R636R 0.41 TCGA-EE-A181-06 2 234368427 234368427 C T DGKD Missense_Mutation p.L907F 0.19 tolerated(0.31) benign(0.15) TCGA-EE-A181-06 2 234465579 234465579 G A USP40 Silent p.D168D 0.46 TCGA-EE-A181-06 2 234545613 234545613 C T UGT1A10 Missense_Mutation p.P149S 0.44 deleterious(0.04) probably_damaging(1) TCGA-EE-A181-06 2 234622120 234622120 G A UGT1A5 Silent p.L161L 0.17 TCGA-EE-A181-06 2 234622121 234622121 G T UGT1A5 Missense_Mutation p.A162S 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A181-06 2 234869676 234869676 G A TRPM8 Missense_Mutation p.R540K 0.21 tolerated(0.44) benign(0.001) TCGA-EE-A181-06 2 235404927 235404927 C G ARL4C Missense_Mutation p.E102Q 0.28 tolerated(0.11) probably_damaging(0.987) TCGA-EE-A181-06 2 235949919 235949919 C T SH3BP4 Missense_Mutation p.P169L 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 2 237489867 237489867 C T ACKR3 Silent p.I253I 0.24 TCGA-EE-A181-06 2 238269788 238269788 G A COL6A3 Silent p.G2062G 0.41 TCGA-EE-A181-06 2 238280964 238280964 C T COL6A3 Silent p.R1232R 0.21 TCGA-EE-A181-06 2 239103470 239103470 G A ILKAP Missense_Mutation p.P33S 0.48 deleterious(0.02) benign(0.356) TCGA-EE-A181-06 2 241078668 241078668 G A OTOS Silent p.I63I 0.45 TCGA-EE-A181-06 2 241535876 241535876 C T CAPN10 Silent p.F473F 0.15 TCGA-EE-A181-06 2 242004773 242004773 C T SNED1 Silent p.I924I 0.27 TCGA-EE-A181-06 2 24507641 24507641 G A ITSN2 Silent p.L645L 0.18 TCGA-EE-A181-06 2 24916135 24916135 C T NCOA1 Silent p.L243L 0.16 TCGA-EE-A181-06 2 24964782 24964782 C T NCOA1 Missense_Mutation p.P1145S 0.22 tolerated(0.09) possibly_damaging(0.491) TCGA-EE-A181-06 2 25384096 25384096 G A POMC Missense_Mutation p.P220S 0.50 tolerated(0.82) benign(0.139) TCGA-EE-A181-06 2 26029195 26029195 G A ASXL2 Missense_Mutation p.P52L 0.42 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 2 27280199 27280199 G A AGBL5 Missense_Mutation p.G522R 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 2 27676352 27676352 G A IFT172 Nonsense_Mutation p.R1284* 0.46 TCGA-EE-A181-06 2 27680767 27680767 G C IFT172 Missense_Mutation p.R1018G 0.16 deleterious(0) possibly_damaging(0.906) TCGA-EE-A181-06 2 27715583 27715583 C T FNDC4 Missense_Mutation p.G207R 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A181-06 2 27715584 27715584 C T FNDC4 Silent p.K206K 0.35 TCGA-EE-A181-06 2 28550225 28550225 C A BRE Silent p.L391L 0.46 TCGA-EE-A181-06 2 28752259 28752259 C T PLB1 Missense_Mutation p.P134L 0.31 deleterious(0.03) benign(0.006) TCGA-EE-A181-06 2 29255882 29255882 G A FAM179A Missense_Mutation p.D699N 0.44 deleterious(0.03) benign(0.394) TCGA-EE-A181-06 2 29268187 29268187 C T FAM179A Intron 0.19 TCGA-EE-A181-06 2 30977163 30977163 C T CAPN13 Missense_Mutation p.E312K 0.18 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 2 31484508 31484508 G A EHD3 Missense_Mutation p.E337K 0.23 tolerated(0.61) benign(0.004) TCGA-EE-A181-06 2 32477592 32477592 C T NLRC4 Missense_Mutation p.G53E 0.09 tolerated(1) benign(0.011) TCGA-EE-A181-06 2 3341912 3341912 G A TSSC1 Silent p.I45I 0.14 TCGA-EE-A181-06 2 37276944 37276944 G A HEATR5B Missense_Mutation p.R850C 0.28 deleterious(0) probably_damaging(0.921) TCGA-EE-A181-06 2 37334419 37334419 A G EIF2AK2 Silent p.C551C 0.40 TCGA-EE-A181-06 2 40656528 40656528 G A SLC8A1 Missense_Mutation p.S298F 0.12 deleterious(0.03) benign(0.374) TCGA-EE-A181-06 2 42488356 42488356 C T EML4 Missense_Mutation p.P145L 0.20 tolerated(0.17) possibly_damaging(0.77) TCGA-EE-A181-06 2 43973083 43973083 C T PLEKHH2 Missense_Mutation p.R1212C 0.44 deleterious(0) possibly_damaging(0.459) TCGA-EE-A181-06 2 46739428 46739428 G A ATP6V1E2 Silent p.L141L 0.14 TCGA-EE-A181-06 2 47288062 47288062 G A TTC7A Silent p.K769K 0.33 TCGA-EE-A181-06 2 48896967 48896967 G A STON1-GTF2A1L Missense_Mutation p.G1066E 0.38 tolerated(1) benign(0.013) TCGA-EE-A181-06 2 50149075 50149075 C T NRXN1 3'UTR 0.11 TCGA-EE-A181-06 2 50850507 50850507 C T NRXN1 Missense_Mutation p.G393E 0.31 tolerated(0.13) probably_damaging(1) TCGA-EE-A181-06 2 54482763 54482763 C T TSPYL6 Missense_Mutation p.E176K 0.36 tolerated(0.31) benign(0.024) TCGA-EE-A181-06 2 55449462 55449462 C T CLHC1 Missense_Mutation p.R29K 0.22 tolerated(0.33) possibly_damaging(0.831) TCGA-EE-A181-06 2 61194636 61194636 C T PUS10 Splice_Site p.X205_splice 0.47 TCGA-EE-A181-06 2 62132934 62132934 C T COMMD1 Missense_Mutation p.P41S 0.11 tolerated(0.08) benign(0.337) TCGA-EE-A181-06 2 65216839 65216839 G A SLC1A4 Missense_Mutation p.G21E 0.40 tolerated(0.24) benign(0.001) TCGA-EE-A181-06 2 669842 669842 G A TMEM18 Missense_Mutation p.S81L 0.48 deleterious(0) probably_damaging(0.935) TCGA-EE-A181-06 2 69014995 69014995 G A ARHGAP25 Missense_Mutation p.G125R 0.22 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A181-06 2 69736437 69736437 G A AAK1 Silent p.V644V 0.22 TCGA-EE-A181-06 2 7001333 7001333 G A CMPK2 Missense_Mutation p.S325F 0.27 tolerated(0.09) benign(0.272) TCGA-EE-A181-06 2 71708023 71708023 G A DYSF Silent p.K34K 0.24 TCGA-EE-A181-06 2 71783145 71783145 G A DYSF Silent p.T720T 0.50 TCGA-EE-A181-06 2 71871175 71871175 G A DYSF Silent p.K1536K 0.56 TCGA-EE-A181-06 2 73145330 73145330 C G EMX1 Missense_Mutation p.L117V 0.50 tolerated(0.05) probably_damaging(0.994) TCGA-EE-A181-06 2 73303160 73303160 G A RAB11FIP5 Silent p.A573A 0.14 TCGA-EE-A181-06 2 73651805 73651805 C T ALMS1 Missense_Mutation p.R338C 0.20 benign(0) TCGA-EE-A181-06 2 73677009 73677009 G A ALMS1 Missense_Mutation p.E1118K 0.18 benign(0.395) TCGA-EE-A181-06 2 73898210 73898210 C T ALMS1P RNA 0.42 TCGA-EE-A181-06 2 74041042 74041042 C T C2orf78 Missense_Mutation p.P179L 0.40 deleterious(0.02) probably_damaging(1) TCGA-EE-A181-06 2 74274192 74274192 C T TET3 Missense_Mutation p.P248L 0.21 tolerated(0.06) benign(0.093) TCGA-EE-A181-06 2 74274685 74274685 C T TET3 Silent p.S412S 0.37 TCGA-EE-A181-06 2 74275145 74275145 C T TET3 Missense_Mutation p.P566S 0.25 tolerated(0.44) benign(0.012) TCGA-EE-A181-06 2 74462304 74462304 G A SLC4A5 Missense_Mutation p.S786F 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 2 74708478 74708478 G A CCDC142 Missense_Mutation p.S377L 0.28 deleterious(0.05) probably_damaging(0.994) TCGA-EE-A181-06 2 75108954 75108954 C T HK2 Missense_Mutation p.P563S 0.17 deleterious(0.03) benign(0.094) TCGA-EE-A181-06 2 79314026 79314026 G A REG1B Missense_Mutation p.P32L 0.22 tolerated(0.12) benign(0) TCGA-EE-A181-06 2 80529539 80529539 C T LRRTM1 Missense_Mutation p.R469K 0.15 tolerated(0.22) probably_damaging(0.931) TCGA-EE-A181-06 2 80529998 80529998 C T LRRTM1 Nonsense_Mutation p.W316* 0.37 TCGA-EE-A181-06 2 80835355 80835355 G A CTNNA2 Missense_Mutation p.R781Q 0.29 tolerated(0.31) benign(0.28) TCGA-EE-A181-06 2 84518146 84518146 G A FUNDC2P2 RNA 0.12 TCGA-EE-A181-06 2 84780041 84780041 G A DNAH6 Splice_Site p.X496_splice 0.23 TCGA-EE-A181-06 2 90108575 90108575 C T IGKV6D-41 Missense_Mutation p.P16S 0.65 tolerated(0.51) benign(0.031) TCGA-EE-A181-06 2 95515041 95515041 G A RNU6-1320P 5'Flank 0.20 TCGA-EE-A181-06 2 98195377 98195377 C T ANKRD36B RNA 0.32 TCGA-EE-A181-06 2 98852918 98852918 G A VWA3B Missense_Mutation p.G832R 0.46 tolerated(0.25) benign(0.019) TCGA-EE-A181-06 2 98853107 98853107 G A VWA3B Missense_Mutation p.D863N 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 2 99169312 99169312 C T INPP4A Silent p.I414I 0.35 TCGA-EE-A181-06 2 99412621 99412621 C T KIAA1211L Missense_Mutation p.G904E 0.44 deleterious(0.04) probably_damaging(1) TCGA-EE-A181-06 2 99767217 99767217 G A C2ORF15 Missense_Mutation p.G100R 0.35 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A181-06 2 99912134 99912134 G A LYG1 5'UTR 0.45 TCGA-EE-A181-06 3 10291219 10291219 C T TATDN2 Missense_Mutation p.S112L 0.24 tolerated(0.12) benign(0.282) TCGA-EE-A181-06 3 10312065 10312065 G A TATDN2 Missense_Mutation p.S400N 0.22 tolerated(0.3) benign(0.015) TCGA-EE-A181-06 3 107497265 107497265 C T BBX Missense_Mutation p.P701L 0.15 deleterious(0) possibly_damaging(0.632) TCGA-EE-A181-06 3 108072364 108072364 C T HHLA2 Missense_Mutation p.S52L 0.36 tolerated(0.22) possibly_damaging(0.519) TCGA-EE-A181-06 3 108074059 108074059 G A HHLA2 Nonsense_Mutation p.W172* 0.15 TCGA-EE-A181-06 3 108107918 108107918 G A MYH15 Missense_Mutation p.R1832C 0.11 deleterious(0.02) benign(0.01) TCGA-EE-A181-06 3 108175660 108175660 G A MYH15 Silent p.C717C 0.14 TCGA-EE-A181-06 3 108549601 108549601 C T TRAT1 Missense_Mutation p.S31F 0.19 tolerated(0.05) benign(0.226) TCGA-EE-A181-06 3 108565969 108565969 G A TRAT1 Missense_Mutation p.M69I 0.17 tolerated(0.57) benign(0.002) TCGA-EE-A181-06 3 108725917 108725917 C T MORC1 Missense_Mutation p.E576K 0.19 tolerated(0.46) benign(0) TCGA-EE-A181-06 3 109031453 109031453 C T DPPA2 Missense_Mutation p.M40I 0.15 tolerated(0.57) benign(0.002) TCGA-EE-A181-06 3 109052744 109052744 C T DPPA4 Missense_Mutation p.E51K 0.11 tolerated(0.29) benign(0.014) TCGA-EE-A181-06 3 11059101 11059101 G A SLC6A1 Nonsense_Mutation p.W68* 0.21 TCGA-EE-A181-06 3 111264196 111264196 T A CD96 Missense_Mutation p.L122Q 0.19 deleterious(0) probably_damaging(0.966) TCGA-EE-A181-06 3 111286448 111286448 A T CD96 Missense_Mutation p.N166I 0.20 deleterious(0) probably_damaging(0.972) TCGA-EE-A181-06 3 111898545 111898545 C T SLC9C1 Missense_Mutation p.E918K 0.20 tolerated(0.6) benign(0.012) TCGA-EE-A181-06 3 111923085 111923085 G A SLC9C1 Missense_Mutation p.R718C 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A181-06 3 113658824 113658824 C T GRAMD1C Nonsense_Mutation p.Q595* 0.14 TCGA-EE-A181-06 3 113677249 113677249 C T ZDHHC23 Silent p.I360I 0.24 TCGA-EE-A181-06 3 113955375 113955375 G A ZNF80 Missense_Mutation p.H183Y 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 118870145 118870145 G A C3orf30 3'UTR 0.16 TCGA-EE-A181-06 3 119367329 119367329 G A POPDC2 Missense_Mutation p.R263C 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 120417366 120417366 C T RABL3 Silent p.G146G 0.18 TCGA-EE-A181-06 3 121126335 121126335 C T STXBP5L Missense_Mutation p.L969F 0.16 deleterious(0.03) probably_damaging(0.915) TCGA-EE-A181-06 3 121228972 121228972 A G POLQ Missense_Mutation p.V577A 0.12 tolerated(0.68) benign(0.002) TCGA-EE-A181-06 3 121339409 121339409 G A FBXO40 5'UTR 0.26 TCGA-EE-A181-06 3 121438523 121438523 G A GOLGB1 Silent p.T247T 0.28 TCGA-EE-A181-06 3 121616315 121616315 C T SLC15A2 Missense_Mutation p.L92F 0.20 tolerated(0.07) possibly_damaging(0.515) TCGA-EE-A181-06 3 121630466 121630466 C T SLC15A2 Silent p.I127I 0.12 TCGA-EE-A181-06 3 122003307 122003307 G A CASR Missense_Mutation p.V846I 0.17 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 3 122849352 122849352 C T PDIA5 Missense_Mutation p.P267S 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A181-06 3 123014946 123014946 G A ADCY5 Silent p.F1016F 0.18 TCGA-EE-A181-06 3 123071317 123071317 G A ADCY5 Nonsense_Mutation p.Q416* 0.18 TCGA-EE-A181-06 3 123452731 123452731 C T MYLK Missense_Mutation p.R371K 0.13 tolerated(0.42) benign(0.034) TCGA-EE-A181-06 3 123512533 123512533 G A MYLK Silent p.F52F 0.31 TCGA-EE-A181-06 3 123987809 123987809 C T KALRN Missense_Mutation p.R224W 0.25 deleterious(0) probably_damaging(0.988) TCGA-EE-A181-06 3 124103814 124103814 C T KALRN Silent p.F629F 0.28 TCGA-EE-A181-06 3 124567200 124567200 A T ITGB5 Silent p.P189P 0.17 TCGA-EE-A181-06 3 124635246 124635246 G A MUC13 Silent p.T293T 0.31 TCGA-EE-A181-06 3 124728598 124728598 G A HEG1 Silent p.I1048I 0.23 TCGA-EE-A181-06 3 124951262 124951262 G A ZNF148 Missense_Mutation p.P770S 0.25 tolerated(0.29) benign(0.056) TCGA-EE-A181-06 3 125775365 125775365 A C SLC41A3 Intron 0.17 TCGA-EE-A181-06 3 1262427 1262427 C T CNTN6 Missense_Mutation p.P38S 0.21 tolerated(0.14) benign(0.01) TCGA-EE-A181-06 3 127340619 127340619 C T MCM2 3'UTR 0.25 TCGA-EE-A181-06 3 127396377 127396377 G A ABTB1 Missense_Mutation p.V278M 0.22 deleterious(0) probably_damaging(0.983) TCGA-EE-A181-06 3 127983499 127983499 T G EEFSEC Missense_Mutation p.S221A 0.22 tolerated(0.33) benign(0.005) TCGA-EE-A181-06 3 128204928 128204928 G A GATA2 Silent p.F171F 0.59 TCGA-EE-A181-06 3 130287196 130287196 G A COL6A6 Missense_Mutation p.G717S 0.44 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 3 130659530 130659530 C T ATP2C1 Silent p.C173C 0.13 TCGA-EE-A181-06 3 130871529 130871529 C T NEK11 Silent p.I284I 0.28 TCGA-EE-A181-06 3 131388553 131388553 G A CPNE4 Missense_Mutation p.S216F 0.16 deleterious(0) benign(0.399) TCGA-EE-A181-06 3 131442365 131442365 G A CPNE4 Silent p.V95V 0.23 TCGA-EE-A181-06 3 133098601 133098601 C T TMEM108 Silent p.L16L 0.16 TCGA-EE-A181-06 3 133489369 133489369 G A TF Missense_Mutation p.G547E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 133647515 133647515 C T C3orf36 Missense_Mutation p.A45T 0.19 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A181-06 3 13378289 13378289 C T NUP210 Missense_Mutation p.E1228K 0.29 tolerated(0.08) benign(0.234) TCGA-EE-A181-06 3 134670754 134670754 G A EPHB1 Missense_Mutation p.R222Q 0.28 tolerated(0.14) possibly_damaging(0.63) TCGA-EE-A181-06 3 134920471 134920471 C A EPHB1 Missense_Mutation p.D762E 0.17 deleterious(0) probably_damaging(0.956) TCGA-EE-A181-06 3 135721467 135721467 C T PPP2R3A Missense_Mutation p.S376F 0.45 tolerated_low_confidence(0.18) benign(0.424) TCGA-EE-A181-06 3 138193065 138193065 A G ESYT3 Missense_Mutation p.N780S 0.18 deleterious(0) probably_damaging(0.991) TCGA-EE-A181-06 3 138474786 138474786 G A PIK3CB Silent p.F69F 0.23 TCGA-EE-A181-06 3 140406593 140406593 G A TRIM42 Missense_Mutation p.E357K 0.20 deleterious(0.01) possibly_damaging(0.89) TCGA-EE-A181-06 3 142089449 142089449 G A XRN1 Nonsense_Mutation p.Q1028* 0.23 TCGA-EE-A181-06 3 146173114 146173114 C T PLSCR2 Missense_Mutation p.R151K 0.14 tolerated(0.73) benign(0.108) TCGA-EE-A181-06 3 14763165 14763165 T A C3orf20 Missense_Mutation p.N480K 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 3 14763166 14763166 G A C3orf20 Missense_Mutation p.E481K 0.22 tolerated(0.12) benign(0.297) TCGA-EE-A181-06 3 148558567 148558567 G A CPB1 Missense_Mutation p.E123K 0.34 tolerated(0.17) benign(0.011) TCGA-EE-A181-06 3 148858068 148858068 C T HPS3 Silent p.I165I 0.20 TCGA-EE-A181-06 3 150931448 150931448 C T P2RY14 Silent p.K219K 0.13 TCGA-EE-A181-06 3 151012560 151012560 C T GPR87 Silent p.T158T 0.18 TCGA-EE-A181-06 3 151094807 151094807 A G MED12L Missense_Mutation p.N1351S 0.18 tolerated(1) benign(0) TCGA-EE-A181-06 3 151161411 151161411 G A IGSF10 Missense_Mutation p.P1775L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 151164105 151164105 G A IGSF10 Nonsense_Mutation p.Q1222* 0.18 TCGA-EE-A181-06 3 151599096 151599096 G A SUCNR1 Silent p.R255R 0.15 TCGA-EE-A181-06 3 155198941 155198941 G A PLCH1 Missense_Mutation p.S1633F 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A181-06 3 155232633 155232633 C T PLCH1 Missense_Mutation p.R492K 0.16 tolerated(0.49) probably_damaging(0.997) TCGA-EE-A181-06 3 157177967 157177967 T C VEPH1 Intron 0.20 TCGA-EE-A181-06 3 157823793 157823793 G A SHOX2 Silent p.F7F 0.10 TCGA-EE-A181-06 3 158372359 158372359 T G GFM1 Missense_Mutation p.I341S 0.15 deleterious(0.03) benign(0.197) TCGA-EE-A181-06 3 160804296 160804296 G A B3GALNT1 Silent p.L83L 0.29 TCGA-EE-A181-06 3 160968719 160968719 C T NMD3 3'UTR 0.14 TCGA-EE-A181-06 3 161221434 161221434 T C OTOL1 Missense_Mutation p.F380L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 16217066 16217066 G C GALNT15 Silent p.G136G 0.19 TCGA-EE-A181-06 3 164905643 164905643 C T SLITRK3 3'UTR 0.18 TCGA-EE-A181-06 3 168807896 168807896 C T MECOM Missense_Mutation p.G975E 0.39 tolerated(0.4) benign(0.02) TCGA-EE-A181-06 3 169492152 169492152 C T MYNN Silent p.L23L 0.27 TCGA-EE-A181-06 3 170723244 170723244 C T SLC2A2 Missense_Mutation p.G265R 0.12 deleterious(0) probably_damaging(0.967) TCGA-EE-A181-06 3 170805195 170805195 C T TNIK Missense_Mutation p.G941E 0.17 tolerated(0.15) possibly_damaging(0.463) TCGA-EE-A181-06 3 170858235 170858235 C T TNIK Missense_Mutation p.E429K 0.18 tolerated(0.3) unknown(0) TCGA-EE-A181-06 3 172474833 172474833 C T ECT2 Missense_Mutation p.P122S 0.22 tolerated(0.23) benign(0.066) TCGA-EE-A181-06 3 172474834 172474834 C T ECT2 Missense_Mutation p.P122L 0.21 tolerated(0.11) benign(0.003) TCGA-EE-A181-06 3 172835519 172835519 C T SPATA16 Translation_Start_Site p.M1? 0.48 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A181-06 3 175293879 175293879 C T NAALADL2 Silent p.I568I 0.15 TCGA-EE-A181-06 3 183442213 183442213 T C YEATS2 Missense_Mutation p.S182P 0.18 tolerated(0.29) benign(0.012) TCGA-EE-A181-06 3 183777335 183777335 C T HTR3C Missense_Mutation p.R278C 0.24 tolerated(0.07) benign(0.248) TCGA-EE-A181-06 3 183778126 183778126 C G HTR3C Missense_Mutation p.L444V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 183818224 183818224 G A HTR3E Missense_Mutation p.E22K 0.16 tolerated_low_confidence(0.68) benign(0.001) TCGA-EE-A181-06 3 184090440 184090440 G A THPO Missense_Mutation p.P308L 0.21 tolerated_low_confidence(0.07) benign(0.023) TCGA-EE-A181-06 3 184953239 184953239 G A EHHADH Missense_Mutation p.R64C 0.28 deleterious(0.03) benign(0.021) TCGA-EE-A181-06 3 185341841 185341841 G A SENP2 Missense_Mutation p.E528K 0.20 deleterious(0.02) benign(0.076) TCGA-EE-A181-06 3 186338548 186338548 G A AHSG Silent p.R311R 0.21 TCGA-EE-A181-06 3 186965068 186965068 G A MASP1 Intron 0.33 TCGA-EE-A181-06 3 187442854 187442854 G A BCL6 Missense_Mutation p.R618C 0.13 deleterious(0) probably_damaging(0.96) TCGA-EE-A181-06 3 189586498 189586498 G A TP63 Silent p.T374T 0.14 TCGA-EE-A181-06 3 189607225 189607225 C T TP63 Missense_Mutation p.S535F 0.20 deleterious(0) possibly_damaging(0.691) TCGA-EE-A181-06 3 189607226 189607226 C A TP63 Silent p.S535S 0.20 TCGA-EE-A181-06 3 190026052 190026052 C T CLDN1 3'UTR 0.11 TCGA-EE-A181-06 3 191075887 191075887 C T CCDC50 Silent p.A71A 0.15 TCGA-EE-A181-06 3 192078269 192078269 C T FGF12 Silent p.Q86Q 0.12 TCGA-EE-A181-06 3 19295352 19295352 G A KCNH8 Missense_Mutation p.G95R 0.19 tolerated(0.14) possibly_damaging(0.609) TCGA-EE-A181-06 3 193185217 193185217 C T ATP13A4 Nonsense_Mutation p.W334* 0.15 TCGA-EE-A181-06 3 193201782 193201782 G A ATP13A4 Missense_Mutation p.L251F 0.18 deleterious(0) probably_damaging(0.975) TCGA-EE-A181-06 3 195475828 195475828 C T MUC4 Missense_Mutation p.G5327S 0.14 benign(0.176) TCGA-EE-A181-06 3 195479950 195479950 C T MUC4 Silent p.G5160G 0.24 TCGA-EE-A181-06 3 195517925 195517925 C T MUC4 Missense_Mutation p.E176K 0.16 unknown(0) TCGA-EE-A181-06 3 195518081 195518081 G A MUC4 Missense_Mutation p.P124S 0.11 unknown(0) TCGA-EE-A181-06 3 19575156 19575156 C T KCNH8 Silent p.P963P 0.21 TCGA-EE-A181-06 3 195975147 195975147 G A PCYT1A Missense_Mutation p.H89Y 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 19924107 19924107 G A EFHB Missense_Mutation p.P755S 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 3 20215772 20215772 C T SGOL1 Silent p.T417T 0.19 TCGA-EE-A181-06 3 21792411 21792411 A T ZNF385D 5'UTR 0.14 TCGA-EE-A181-06 3 24169139 24169139 C T THRB Missense_Mutation p.G332E 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A181-06 3 24185072 24185072 C T THRB Missense_Mutation p.E220K 0.22 tolerated(0.1) benign(0.015) TCGA-EE-A181-06 3 24185123 24185123 C T THRB Missense_Mutation p.E203K 0.25 tolerated(0.15) benign(0.035) TCGA-EE-A181-06 3 26751356 26751356 G A LRRC3B Missense_Mutation p.E65K 0.21 deleterious(0) benign(0.233) TCGA-EE-A181-06 3 28562581 28562581 G A ZCWPW2 Missense_Mutation p.G295R 0.14 tolerated(0.06) benign(0.068) TCGA-EE-A181-06 3 3084839 3084839 G A CNTN4 Missense_Mutation p.R897Q 0.13 deleterious(0) benign(0.005) TCGA-EE-A181-06 3 3131940 3131940 C T IL5RA Intron 0.13 TCGA-EE-A181-06 3 32031661 32031661 C T ZNF860 Missense_Mutation p.H364Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 3 33038575 33038575 G A GLB1 Missense_Mutation p.P666S 0.30 tolerated_low_confidence(0.14) benign(0.012) TCGA-EE-A181-06 3 33038576 33038576 G A GLB1 Silent p.P665P 0.31 TCGA-EE-A181-06 3 36779808 36779808 C T DCLK3 Missense_Mutation p.E115K 0.24 tolerated(0.1) benign(0.202) TCGA-EE-A181-06 3 36873921 36873921 C T TRANK1 Missense_Mutation p.G2341R 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 3 36887847 36887847 G A TRANK1 Missense_Mutation p.R1651W 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 38040892 38040892 C T VILL Nonsense_Mutation p.Q382* 0.24 TCGA-EE-A181-06 3 38136470 38136470 G A DLEC1 Missense_Mutation p.D674N 0.22 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A181-06 3 38591907 38591907 C T SCN5A Missense_Mutation p.D1986N 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A181-06 3 38592526 38592526 C T SCN5A Silent p.T1779T 0.25 TCGA-EE-A181-06 3 38620973 38620973 G A SCN5A Missense_Mutation p.P1081L 0.20 tolerated(0.34) benign(0.003) TCGA-EE-A181-06 3 38622577 38622577 C T SCN5A Missense_Mutation p.E1025K 0.32 tolerated(0.46) probably_damaging(0.997) TCGA-EE-A181-06 3 38639450 38639450 C T SCN5A Missense_Mutation p.E678K 0.29 tolerated(0.07) possibly_damaging(0.81) TCGA-EE-A181-06 3 38739449 38739449 C T SCN10A Silent p.E1754E 0.15 TCGA-EE-A181-06 3 38743472 38743472 C T SCN10A Silent p.T1505T 0.23 TCGA-EE-A181-06 3 38936198 38936198 C T SCN11A Missense_Mutation p.M887I 0.23 tolerated(0.56) benign(0.003) TCGA-EE-A181-06 3 39225965 39225965 G A XIRP1 Missense_Mutation p.R1658W 0.36 deleterious(0.01) benign(0.446) TCGA-EE-A181-06 3 39227456 39227456 G A XIRP1 Nonsense_Mutation p.Q1161* 0.39 TCGA-EE-A181-06 3 39307170 39307170 C T CX3CR1 Silent p.V309V 0.22 TCGA-EE-A181-06 3 39307287 39307287 G A CX3CR1 Silent p.I270I 0.30 TCGA-EE-A181-06 3 39307743 39307743 G A CX3CR1 Silent p.F118F 0.17 TCGA-EE-A181-06 3 40204221 40204221 G A MYRIP Missense_Mutation p.G157E 0.27 tolerated(1) possibly_damaging(0.725) TCGA-EE-A181-06 3 40457364 40457364 G A ENTPD3 Missense_Mutation p.G211R 0.14 tolerated(0.17) possibly_damaging(0.766) TCGA-EE-A181-06 3 41280628 41280628 C T CTNNB1 Missense_Mutation p.P714L 0.27 tolerated_low_confidence(0.07) benign(0.022) TCGA-EE-A181-06 3 41942229 41942229 G A ULK4 Silent p.I425I 0.19 TCGA-EE-A181-06 3 42729765 42729765 C T KLHL40 Silent p.C428C 0.32 TCGA-EE-A181-06 3 42729766 42729766 C T KLHL40 Silent p.L429L 0.34 TCGA-EE-A181-06 3 43744062 43744062 G A ABHD5 Silent p.S163S 0.36 TCGA-EE-A181-06 3 46009867 46009867 T A FYCO1 Missense_Mutation p.Q320L 0.44 deleterious(0.05) benign(0.423) TCGA-EE-A181-06 3 46245712 46245712 G A CCR1 Silent p.A31A 0.31 TCGA-EE-A181-06 3 46415067 46415067 G A CCR5 Missense_Mutation p.R225Q 0.18 tolerated(0.06) benign(0.407) TCGA-EE-A181-06 3 46729175 46729175 C A ALS2CL Splice_Site p.X101_splice 0.14 TCGA-EE-A181-06 3 47033073 47033073 C T NBEAL2 Missense_Mutation p.R274C 0.12 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A181-06 3 47307352 47307352 G A KIF9 Silent p.L262L 0.20 TCGA-EE-A181-06 3 4735216 4735216 A C ITPR1 Silent p.R1343R 0.14 TCGA-EE-A181-06 3 47551689 47551689 G A ELP6 Silent p.I63I 0.19 TCGA-EE-A181-06 3 48501565 48501565 C T ATRIP Missense_Mutation p.S371F 0.11 deleterious(0.02) possibly_damaging(0.667) TCGA-EE-A181-06 3 48697011 48697011 G A CELSR3 Silent p.V1019V 0.23 TCGA-EE-A181-06 3 48699263 48699263 G T CELSR3 Missense_Mutation p.P269T 0.29 deleterious_low_confidence(0) benign(0.255) TCGA-EE-A181-06 3 48719028 48719028 G A NCKIPSD Missense_Mutation p.P262S 0.23 tolerated(0.07) benign(0.099) TCGA-EE-A181-06 3 49163850 49163850 C - LAMB2 Frame_Shift_Del p.G700Efs*28 0.12 TCGA-EE-A181-06 3 49690793 49690793 C T BSN Silent p.V1268V 0.17 TCGA-EE-A181-06 3 49698253 49698253 A G BSN Missense_Mutation p.K2992R 0.15 unknown(0) TCGA-EE-A181-06 3 49699446 49699446 C T BSN Missense_Mutation p.P3390S 0.21 unknown(0) TCGA-EE-A181-06 3 49765026 49765026 G A IP6K1 Silent p.S285S 0.30 TCGA-EE-A181-06 3 49932747 49932747 C T MST1R Missense_Mutation p.D1042N 0.15 tolerated(0.42) benign(0.008) TCGA-EE-A181-06 3 50355824 50355824 G A HYAL2 Silent p.F386F 0.42 TCGA-EE-A181-06 3 50355943 50355943 G A HYAL2 Silent p.L347L 0.15 TCGA-EE-A181-06 3 50417203 50417203 C T CACNA2D2 Missense_Mutation p.E316K 0.21 tolerated(0.11) possibly_damaging(0.79) TCGA-EE-A181-06 3 51400070 51400070 C T DOCK3 Missense_Mutation p.S1753F 0.27 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A181-06 3 52429347 52429347 C T DNAH1 Silent p.F3664F 0.33 TCGA-EE-A181-06 3 53223221 53223221 C T PRKCD Missense_Mutation p.P568S 0.15 deleterious(0.05) probably_damaging(1) TCGA-EE-A181-06 3 53259838 53259838 C T TKT Silent p.L610L 0.24 TCGA-EE-A181-06 3 53779858 53779858 C T CACNA1D Silent p.F1061F 0.20 TCGA-EE-A181-06 3 54676173 54676173 G A CACNA2D3 Missense_Mutation p.G358R 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 3 54872646 54872646 G A CACNA2D3 Missense_Mutation p.E508K 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 3 55108291 55108291 G A CACNA2D3 3'UTR 0.22 TCGA-EE-A181-06 3 56330352 56330352 C T ERC2 Missense_Mutation p.E257K 0.18 tolerated(0.05) probably_damaging(0.954) TCGA-EE-A181-06 3 56763334 56763334 G A ARHGEF3 Silent p.S547S 0.26 TCGA-EE-A181-06 3 58121716 58121716 G A FLNB Missense_Mutation p.G1592E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 58156509 58156509 G A FLNB 3'Flank 0.31 TCGA-EE-A181-06 3 61734565 61734565 C T PTPRG Silent p.G33G 0.27 TCGA-EE-A181-06 3 62356014 62356014 T C FEZF2 Missense_Mutation p.N375S 0.36 tolerated(0.05) possibly_damaging(0.874) TCGA-EE-A181-06 3 67053899 67053899 C T KBTBD8 Nonsense_Mutation p.R170* 0.26 TCGA-EE-A181-06 3 71743062 71743062 T C EIF4E3 Missense_Mutation p.T146A 0.21 tolerated(0.76) benign(0.179) TCGA-EE-A181-06 3 72971411 72971411 C T GXYLT2 Silent p.I175I 0.22 TCGA-EE-A181-06 3 7340486 7340486 G A GRM7 Silent p.V284V 0.25 TCGA-EE-A181-06 3 7348259 7348259 C T GRM7 Missense_Mutation p.S318F 0.18 deleterious(0.04) possibly_damaging(0.776) TCGA-EE-A181-06 3 74350679 74350679 C T CNTN3 Silent p.G655G 0.24 TCGA-EE-A181-06 3 74411160 74411160 C T CNTN3 Missense_Mutation p.M415I 0.21 tolerated(0.19) possibly_damaging(0.507) TCGA-EE-A181-06 3 7494382 7494382 C T GRM7 Silent p.A421A 0.24 TCGA-EE-A181-06 3 9055491 9055491 G A SRGAP3 Nonsense_Mutation p.Q617* 0.24 TCGA-EE-A181-06 3 93734118 93734118 C T STX19 5'UTR 0.15 TCGA-EE-A181-06 3 96706323 96706323 C T EPHA6 Silent p.F200F 0.31 TCGA-EE-A181-06 3 96706446 96706446 G A EPHA6 Silent p.K241K 0.11 TCGA-EE-A181-06 3 96706639 96706639 C T EPHA6 Missense_Mutation p.R306C 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 96706780 96706780 C T EPHA6 Missense_Mutation p.P353S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 3 9695378 9695383 ATGGGG - MTMR14 In_Frame_Del p.G79_D80del 0.22 TCGA-EE-A181-06 3 9759841 9759841 G A CPNE9 Missense_Mutation p.G354S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 3 97806295 97806295 G A OR5AC2 Missense_Mutation p.M93I 0.22 tolerated(0.22) benign(0.004) TCGA-EE-A181-06 3 97887620 97887620 C T OR5H15 Missense_Mutation p.P26L 0.17 tolerated(0.89) benign(0.013) TCGA-EE-A181-06 3 97888248 97888248 G A OR5H15 Silent p.R235R 0.43 TCGA-EE-A181-06 3 97983751 97983751 C T OR5H6 Missense_Mutation p.S208F 0.25 deleterious(0) possibly_damaging(0.637) TCGA-EE-A181-06 3 98002086 98002086 C T OR5H2 Missense_Mutation p.L119F 0.21 deleterious(0) probably_damaging(0.962) TCGA-EE-A181-06 3 98073283 98073283 G A OR5K4 Missense_Mutation p.E196K 0.19 tolerated(0.28) benign(0.139) TCGA-EE-A181-06 3 98188656 98188656 C T OR5K1 Missense_Mutation p.P79L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 3 98240565 98240565 G A CLDND1 Intron 0.19 TCGA-EE-A181-06 3 98251936 98251936 G A GPR15 Silent p.R353R 0.12 TCGA-EE-A181-06 3 99513236 99513236 G A COL8A1 Missense_Mutation p.G164E 0.40 deleterious(0) unknown(0) TCGA-EE-A181-06 3 99567893 99567893 C T FILIP1L Missense_Mutation p.G876E 0.22 deleterious(0.03) probably_damaging(0.909) TCGA-EE-A181-06 4 100057780 100057780 C T ADH4 Missense_Mutation p.G140E 0.36 deleterious(0.01) benign(0.237) TCGA-EE-A181-06 4 100131640 100131640 G A ADH6 Silent p.L94L 0.08 TCGA-EE-A181-06 4 100197747 100197747 G A ADH1A 3'UTR 0.38 TCGA-EE-A181-06 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.23 probably_damaging(1) TCGA-EE-A181-06 4 102946525 102946525 G A BANK1 Missense_Mutation p.D485N 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A181-06 4 103723746 103723746 G C UBE2D3 Missense_Mutation p.P59R 0.18 deleterious_low_confidence(0.02) probably_damaging(0.92) TCGA-EE-A181-06 4 103723747 103723747 G A UBE2D3 Missense_Mutation p.P59S 0.19 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-EE-A181-06 4 106158123 106158123 G A TET2 Silent p.K1008K 0.25 TCGA-EE-A181-06 4 109004570 109004570 G A LEF1 Missense_Mutation p.P194S 0.21 tolerated(1) benign(0.129) TCGA-EE-A181-06 4 110739239 110739239 G A GAR1 Missense_Mutation p.R121K 0.29 tolerated(0.16) benign(0.137) TCGA-EE-A181-06 4 114262906 114262906 G A ANK2 Missense_Mutation p.R1319K 0.26 probably_damaging(0.999) TCGA-EE-A181-06 4 115858527 115858527 G A NDST4 Missense_Mutation p.P452S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 4 119626904 119626904 C T METTL14 Missense_Mutation p.H332Y 0.49 deleterious(0) probably_damaging(0.988) TCGA-EE-A181-06 4 119654012 119654012 T G SEC24D Missense_Mutation p.K851T 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 121958645 121958645 C T NDNF Missense_Mutation p.V161I 0.24 tolerated(0.08) benign(0.015) TCGA-EE-A181-06 4 121966853 121966853 G A NDNF Missense_Mutation p.P47L 0.17 tolerated(0.15) possibly_damaging(0.83) TCGA-EE-A181-06 4 123377467 123377467 C T IL2 Missense_Mutation p.M43I 0.25 tolerated(0.24) benign(0.002) TCGA-EE-A181-06 4 126328071 126328071 G A FAT4 Missense_Mutation p.G1782R 0.30 probably_damaging(0.999) TCGA-EE-A181-06 4 126336719 126336719 G A FAT4 Missense_Mutation p.E2201K 0.18 possibly_damaging(0.472) TCGA-EE-A181-06 4 126336765 126336765 C A FAT4 Missense_Mutation p.P2216H 0.56 possibly_damaging(0.722) TCGA-EE-A181-06 4 126411404 126411404 G A FAT4 Missense_Mutation p.G4476E 0.23 probably_damaging(1) TCGA-EE-A181-06 4 126411405 126411405 G A FAT4 Silent p.G4476G 0.24 TCGA-EE-A181-06 4 128628090 128628090 C T INTU Missense_Mutation p.S746F 0.19 tolerated(0.1) benign(0.059) TCGA-EE-A181-06 4 138451229 138451229 G A PCDH18 Silent p.L672L 0.26 TCGA-EE-A181-06 4 138453061 138453061 G A PCDH18 Missense_Mutation p.P61L 0.23 tolerated(0.21) benign(0.403) TCGA-EE-A181-06 4 141483493 141483493 G A UCP1 Silent p.I221I 0.27 TCGA-EE-A181-06 4 141592033 141592033 G A TBC1D9 Silent p.P369P 0.49 TCGA-EE-A181-06 4 146467983 146467983 C T SMAD1 Missense_Mutation p.P302S 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 4 146824009 146824009 G A ZNF827 Silent p.L134L 0.24 TCGA-EE-A181-06 4 149356895 149356895 G A NR3C2 Missense_Mutation p.P373L 0.53 tolerated_low_confidence(0.1) benign(0.032) TCGA-EE-A181-06 4 155242155 155242155 C T DCHS2 Missense_Mutation p.E1011K 0.30 tolerated(0.07) possibly_damaging(0.511) TCGA-EE-A181-06 4 155526062 155526062 C T FGG Missense_Mutation p.G429E 0.49 deleterious_low_confidence(0) benign(0.076) TCGA-EE-A181-06 4 156723706 156723706 C A GUCY1B3 Missense_Mutation p.S463Y 0.31 tolerated(0.72) benign(0.349) TCGA-EE-A181-06 4 157771520 157771520 C T PDGFC Missense_Mutation p.G56E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 157771521 157771521 C T PDGFC Missense_Mutation p.G56R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 160253705 160253705 C T RAPGEF2 Missense_Mutation p.P503L 0.21 tolerated(0.11) benign(0.019) TCGA-EE-A181-06 4 165961962 165961962 G A TRIM60 Silent p.L246L 0.25 TCGA-EE-A181-06 4 16900071 16900071 G A LDB2 Missense_Mutation p.P13L 0.32 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-EE-A181-06 4 169374299 169374299 C T DDX60L Silent p.R324R 0.17 TCGA-EE-A181-06 4 170618774 170618774 C T CLCN3 Silent p.V484V 0.22 TCGA-EE-A181-06 4 171009679 171009679 G A AADAT Missense_Mutation p.S35F 0.28 deleterious(0.04) benign(0.333) TCGA-EE-A181-06 4 175231094 175231094 T C CEP44 Silent p.L258L 0.24 TCGA-EE-A181-06 4 17528483 17528483 G A CLRN2 Silent p.V159V 0.11 TCGA-EE-A181-06 4 177113961 177113961 C T SPATA4 Missense_Mutation p.D169N 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 177146477 177146477 C T ASB5 Missense_Mutation p.R71Q 0.22 tolerated(0.16) probably_damaging(0.992) TCGA-EE-A181-06 4 184598669 184598669 C T TRAPPC11 Silent p.L265L 0.52 TCGA-EE-A181-06 4 185012430 185012430 G A ENPP6 Missense_Mutation p.S408F 0.10 deleterious(0) probably_damaging(0.935) TCGA-EE-A181-06 4 187131833 187131833 C T CYP4V2 3'UTR 0.22 TCGA-EE-A181-06 4 187173201 187173201 T C KLKB1 Missense_Mutation p.V392A 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A181-06 4 187175746 187175746 C T KLKB1 Missense_Mutation p.P440S 0.45 tolerated(0.67) benign(0.001) TCGA-EE-A181-06 4 187628754 187628754 T A FAT1 Missense_Mutation p.D743V 0.26 probably_damaging(1) TCGA-EE-A181-06 4 188924305 188924305 C T ZFP42 Missense_Mutation p.S115F 0.21 deleterious(0.01) possibly_damaging(0.71) TCGA-EE-A181-06 4 189022258 189022258 C T TRIML2 Silent p.A94A 0.49 TCGA-EE-A181-06 4 189026058 189026058 G A TRIML2 Missense_Mutation p.S23L 0.25 tolerated(1) benign(0.001) TCGA-EE-A181-06 4 189060821 189060821 C T TRIML1 Silent p.L37L 0.09 TCGA-EE-A181-06 4 189068223 189068223 C T TRIML1 Silent p.L368L 0.26 TCGA-EE-A181-06 4 20529930 20529930 G A SLIT2 Intron 0.26 TCGA-EE-A181-06 4 20555568 20555568 C T SLIT2 Missense_Mutation p.P901L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 21698995 21698995 T G KCNIP4 Intron 0.40 TCGA-EE-A181-06 4 22749170 22749170 C T GBA3 Missense_Mutation p.P180S 0.23 tolerated(0.06) possibly_damaging(0.567) TCGA-EE-A181-06 4 25384968 25384968 G A ANAPC4 Silent p.E107E 0.22 TCGA-EE-A181-06 4 25783937 25783937 T C SEL1L3 Missense_Mutation p.N795S 0.11 tolerated(0.72) possibly_damaging(0.669) TCGA-EE-A181-06 4 26491783 26491783 G A CCKAR Missense_Mutation p.S36F 0.24 tolerated(0.08) benign(0.328) TCGA-EE-A181-06 4 2695381 2695381 C T FAM193A Missense_Mutation p.P667S 0.26 tolerated(0.23) probably_damaging(0.994) TCGA-EE-A181-06 4 27024441 27024441 C T STIM2 Silent p.I696I 0.36 TCGA-EE-A181-06 4 2886287 2886287 C T ADD1 Missense_Mutation p.S135F 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A181-06 4 3015492 3015492 G A GRK4 Silent p.R226R 0.26 TCGA-EE-A181-06 4 3134593 3134593 G A HTT Silent p.K816K 0.19 TCGA-EE-A181-06 4 3136170 3136170 G A HTT Missense_Mutation p.G846R 0.21 probably_damaging(0.999) TCGA-EE-A181-06 4 3240191 3240191 C T HTT Missense_Mutation p.P2970L 0.33 probably_damaging(0.999) TCGA-EE-A181-06 4 37903700 37903700 C T TBC1D1 5'UTR 0.22 TCGA-EE-A181-06 4 37962342 37962342 A C PTTG2 Missense_Mutation p.K96T 0.18 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A181-06 4 38777224 38777224 G A TLR10 5'UTR 0.23 TCGA-EE-A181-06 4 40356167 40356167 G A CHRNA9 Missense_Mutation p.S357N 0.16 tolerated(1) benign(0.006) TCGA-EE-A181-06 4 41496613 41496613 C T LIMCH1 Missense_Mutation p.L53F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 4 41648236 41648236 G A LIMCH1 Missense_Mutation p.E399K 0.18 tolerated(0.17) benign(0.418) TCGA-EE-A181-06 4 42445675 42445675 C T ATP8A1 Silent p.A1010A 0.16 TCGA-EE-A181-06 4 42457419 42457419 A T ATP8A1 Silent p.P904P 0.15 TCGA-EE-A181-06 4 4389470 4389470 C T NSG1 Silent p.F38F 0.18 TCGA-EE-A181-06 4 44176909 44176909 C T KCTD8 Missense_Mutation p.M440I 0.20 deleterious(0.01) possibly_damaging(0.775) TCGA-EE-A181-06 4 44177162 44177162 G A KCTD8 Missense_Mutation p.S356F 0.27 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 4 44177177 44177177 G A KCTD8 Missense_Mutation p.S351F 0.29 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 4 46043062 46043062 G A GABRG1 Silent p.F447F 0.15 TCGA-EE-A181-06 4 47427898 47427898 C T GABRB1 Missense_Mutation p.R430C 0.24 deleterious(0) probably_damaging(0.953) TCGA-EE-A181-06 4 47695045 47695045 C T CORIN Silent p.G285G 0.38 TCGA-EE-A181-06 4 47765520 47765520 T A CORIN Missense_Mutation p.N165Y 0.24 deleterious(0.05) benign(0.014) TCGA-EE-A181-06 4 48038100 48038100 G A NIPAL1 Missense_Mutation p.E382K 0.21 deleterious(0.02) benign(0.176) TCGA-EE-A181-06 4 48529500 48529500 A C FRYL Missense_Mutation p.D2437E 0.14 tolerated(0.17) probably_damaging(0.989) TCGA-EE-A181-06 4 48597968 48597968 A G FRYL Missense_Mutation p.L362S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 48844704 48844704 A T OCIAD1 Missense_Mutation p.K64I 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 49052849 49052849 A T CWH43 Missense_Mutation p.K668N 0.23 tolerated(0.4) benign(0.001) TCGA-EE-A181-06 4 49063860 49063860 G A CWH43 Missense_Mutation p.E685K 0.24 tolerated(0.37) benign(0.006) TCGA-EE-A181-06 4 52860816 52860816 T A LRRC66 Missense_Mutation p.E791V 0.41 deleterious(0) probably_damaging(0.965) TCGA-EE-A181-06 4 54257599 54257599 C A FIP1L1 Silent p.A213A 0.13 TCGA-EE-A181-06 4 55127443 55127443 C T PDGFRA Silent p.N77N 0.24 TCGA-EE-A181-06 4 55972087 55972087 G A KDR Silent p.I519I 0.22 TCGA-EE-A181-06 4 6303031 6303031 C T WFS1 Silent p.V503V 0.19 TCGA-EE-A181-06 4 65145907 65145907 A G TECRL Silent p.F325F 0.16 TCGA-EE-A181-06 4 6607052 6607052 G A MAN2B2 Missense_Mutation p.E604K 0.15 tolerated(0.08) benign(0.259) TCGA-EE-A181-06 4 68441174 68441174 G A STAP1 Silent p.A88A 0.27 TCGA-EE-A181-06 4 68459022 68459022 G A STAP1 Silent p.K258K 0.15 TCGA-EE-A181-06 4 6863659 6863659 C T KIAA0232 Missense_Mutation p.S517F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 4 68703983 68703983 C T TMPRSS11D Missense_Mutation p.G128R 0.18 tolerated(0.57) benign(0.133) TCGA-EE-A181-06 4 68780365 68780365 C T TMPRSS11A Missense_Mutation p.D349N 0.13 tolerated(0.17) benign(0.066) TCGA-EE-A181-06 4 69188609 69188609 G A YTHDC1 Nonsense_Mutation p.Q487* 0.13 TCGA-EE-A181-06 4 69512849 69512849 T C UGT2B15 Silent p.K522K 0.18 TCGA-EE-A181-06 4 69536328 69536328 C T UGT2B15 Silent p.L3L 0.33 TCGA-EE-A181-06 4 69683876 69683876 C T UGT2B10 Missense_Mutation p.P283L 0.15 deleterious(0) probably_damaging(0.99) TCGA-EE-A181-06 4 7000918 7000918 C T TBC1D14 Silent p.N384N 0.16 TCGA-EE-A181-06 4 70066355 70066355 C T UGT2B11 Missense_Mutation p.E465K 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A181-06 4 70080130 70080130 C T UGT2B11 Missense_Mutation p.S104N 0.39 tolerated(0.15) benign(0.02) TCGA-EE-A181-06 4 70080479 70080479 C T UGT2B11 5'Flank 0.22 TCGA-EE-A181-06 4 70146547 70146547 C T UGT2B28 Missense_Mutation p.S110L 0.37 tolerated(0.72) benign(0.02) TCGA-EE-A181-06 4 70346364 70346364 C T UGT2B4 Silent p.G525G 0.20 TCGA-EE-A181-06 4 70361013 70361013 G A UGT2B4 Silent p.F189F 0.26 TCGA-EE-A181-06 4 70455137 70455137 A T UGT2A1 Missense_Mutation p.S679T 0.12 deleterious(0.04) benign(0.026) TCGA-EE-A181-06 4 70505195 70505195 C T UGT2A2 Missense_Mutation p.R55K 0.16 tolerated(0.14) benign(0.071) TCGA-EE-A181-06 4 70512825 70512825 C T UGT2A1 Missense_Mutation p.E180K 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 70615461 70615461 G A SULT1B1 Missense_Mutation p.S118F 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 4 71347045 71347045 C T MUC7 Missense_Mutation p.P195L 0.18 deleterious(0.01) unknown(0) TCGA-EE-A181-06 4 71347075 71347075 C T MUC7 Missense_Mutation p.S205F 0.38 tolerated(0.06) unknown(0) TCGA-EE-A181-06 4 71508434 71508434 G A ENAM Missense_Mutation p.E431K 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A181-06 4 71655444 71655444 C T RUFY3 Intron 0.29 TCGA-EE-A181-06 4 72316972 72316972 G A SLC4A4 Missense_Mutation p.G426R 0.15 tolerated(0.43) possibly_damaging(0.88) TCGA-EE-A181-06 4 72338444 72338444 C T SLC4A4 Missense_Mutation p.R554C 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 7435758 7435758 C T PSAPL1 Silent p.Q283Q 0.21 TCGA-EE-A181-06 4 74853054 74853054 G A PPBP Missense_Mutation p.P108S 0.13 deleterious(0) probably_damaging(0.92) TCGA-EE-A181-06 4 75065601 75065601 T C MTHFD2L Missense_Mutation p.L181P 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 75695356 75695356 G A BTC Silent p.I25I 0.28 TCGA-EE-A181-06 4 7726961 7726961 C T SORCS2 Missense_Mutation p.P898S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 77662415 77662415 G A SHROOM3 Missense_Mutation p.G1030E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 4 7820830 7820830 G A AFAP1 Silent p.S265S 0.17 TCGA-EE-A181-06 4 79832642 79832642 C T BMP2K Missense_Mutation p.R981C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A181-06 4 80246972 80246972 A T NAA11 Silent p.L20L 0.22 TCGA-EE-A181-06 4 80328545 80328545 G A GK2 Silent p.F270F 0.09 TCGA-EE-A181-06 4 82010939 82010939 G A PRKG2 Missense_Mutation p.H738Y 0.14 tolerated(1) benign(0.004) TCGA-EE-A181-06 4 83602041 83602041 C T SCD5 Missense_Mutation p.D130N 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 4 83858424 83858424 C T LIN54 Silent p.R520R 0.19 TCGA-EE-A181-06 4 88533671 88533671 G A DSPP Silent p.G111G 0.25 TCGA-EE-A181-06 4 88533679 88533679 G A DSPP Missense_Mutation p.G114E 0.27 possibly_damaging(0.784) TCGA-EE-A181-06 4 88766817 88766817 C T MEPE Missense_Mutation p.P266L 0.19 tolerated(0.49) benign(0.004) TCGA-EE-A181-06 4 88904004 88904004 C T SPP1 Missense_Mutation p.R301C 0.17 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 4 89028360 89028360 T A ABCG2 Missense_Mutation p.N418I 0.15 deleterious(0.02) benign(0.2) TCGA-EE-A181-06 4 89311819 89311819 C T HERC6 Missense_Mutation p.S151L 0.28 deleterious(0) probably_damaging(0.941) TCGA-EE-A181-06 4 90170573 90170573 G A GPRIN3 Missense_Mutation p.S230F 0.19 deleterious(0.01) possibly_damaging(0.695) TCGA-EE-A181-06 4 90857003 90857003 G A MMRN1 Missense_Mutation p.M724I 0.14 tolerated(0.8) benign(0.164) TCGA-EE-A181-06 4 91230231 91230231 G A CCSER1 Missense_Mutation p.D266N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 4 94031943 94031943 G A GRID2 Missense_Mutation p.G192R 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A181-06 4 94159621 94159621 C T GRID2 Missense_Mutation p.L409F 0.32 tolerated(0.67) benign(0.002) TCGA-EE-A181-06 4 985058 985058 C T SLC26A1 Missense_Mutation p.G145D 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 101816075 101816075 G A SLCO6A1 Missense_Mutation p.T141I 0.21 tolerated(0.25) benign(0.137) TCGA-EE-A181-06 5 102343270 102343270 C T PAM Silent p.I708I 0.31 TCGA-EE-A181-06 5 10381949 10381949 A G MARCH6 Silent p.Q76Q 0.14 TCGA-EE-A181-06 5 10426588 10426588 C T MARCH6 Silent p.S820S 0.26 TCGA-EE-A181-06 5 110820045 110820045 G A CAMK4 Missense_Mutation p.G435S 0.18 tolerated_low_confidence(0.42) benign(0.003) TCGA-EE-A181-06 5 11111000 11111000 C T CTNND2 Silent p.K811K 0.15 TCGA-EE-A181-06 5 112157648 112157648 T G APC Silent p.L456L 0.26 TCGA-EE-A181-06 5 112406831 112406831 C T MCC Missense_Mutation p.E629K 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A181-06 5 114466386 114466386 G A TRIM36 Missense_Mutation p.R579C 0.21 tolerated(0.1) possibly_damaging(0.79) TCGA-EE-A181-06 5 115146919 115146919 G A CDO1 Silent p.S114S 0.19 TCGA-EE-A181-06 5 115336309 115336309 C T AQPEP Missense_Mutation p.S534F 0.16 deleterious(0) probably_damaging(0.99) TCGA-EE-A181-06 5 118485177 118485177 T G DMXL1 Missense_Mutation p.L1219V 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 5 118728890 118728890 G A TNFAIP8 Silent p.E137E 0.22 TCGA-EE-A181-06 5 118968463 118968463 G A FAM170A Missense_Mutation p.D31N 0.53 tolerated(0.14) benign(0.178) TCGA-EE-A181-06 5 1266649 1266649 G A TERT Silent p.L862L 0.14 TCGA-EE-A181-06 5 128365291 128365291 T G SLC27A6 Missense_Mutation p.M525R 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 5 130695156 130695156 C T CDC42SE2 5'UTR 0.22 TCGA-EE-A181-06 5 131006311 131006311 C T FNIP1 Missense_Mutation p.E985K 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A181-06 5 131647942 131647942 G A SLC22A4 Missense_Mutation p.G161E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 131726450 131726450 T G SLC22A5 Missense_Mutation p.V374G 0.20 deleterious(0) possibly_damaging(0.529) TCGA-EE-A181-06 5 131726460 131726460 C T SLC22A5 Silent p.F377F 0.16 TCGA-EE-A181-06 5 132227744 132227744 G A AFF4 Intron 0.46 TCGA-EE-A181-06 5 134782185 134782185 G A C5orf20 Missense_Mutation p.S205L 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.519) TCGA-EE-A181-06 5 135382658 135382658 C T TGFBI Missense_Mutation p.S193F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 5 135567205 135567205 G A TRPC7 Missense_Mutation p.S626F 0.18 deleterious(0) probably_damaging(0.981) TCGA-EE-A181-06 5 135692717 135692717 C T TRPC7 Missense_Mutation p.R120H 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 5 136602742 136602742 A C SPOCK1 Missense_Mutation p.D63E 0.21 tolerated(0.15) benign(0.031) TCGA-EE-A181-06 5 136964127 136964127 C T KLHL3 Splice_Site p.X484_splice 0.18 TCGA-EE-A181-06 5 137242080 137242080 A C PKD2L2 Missense_Mutation p.Y311S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 13737541 13737541 C T DNAH5 Missense_Mutation p.E3759K 0.20 possibly_damaging(0.621) TCGA-EE-A181-06 5 137802972 137802972 G A EGR1 Silent p.E278E 0.17 TCGA-EE-A181-06 5 13841988 13841988 G A DNAH5 Missense_Mutation p.S1766F 0.57 possibly_damaging(0.788) TCGA-EE-A181-06 5 13859705 13859705 C T DNAH5 Missense_Mutation p.M1602I 0.15 benign(0) TCGA-EE-A181-06 5 138661119 138661119 T G MATR3 Intron 0.16 TCGA-EE-A181-06 5 138661120 138661120 G C MATR3 Intron 0.16 TCGA-EE-A181-06 5 13871727 13871727 C T DNAH5 Missense_Mutation p.E1182K 0.14 benign(0.292) TCGA-EE-A181-06 5 13901506 13901506 C A DNAH5 Missense_Mutation p.R636M 0.18 possibly_damaging(0.803) TCGA-EE-A181-06 5 13911527 13911527 C T DNAH5 Missense_Mutation p.E538K 0.16 possibly_damaging(0.635) TCGA-EE-A181-06 5 13917339 13917339 G A DNAH5 Silent p.I334I 0.32 TCGA-EE-A181-06 5 13944539 13944539 C T DNAH5 Silent p.R3R 0.11 TCGA-EE-A181-06 5 139815696 139815696 C T ANKHD1 Missense_Mutation p.S105L 0.26 unknown(0) TCGA-EE-A181-06 5 139908859 139908859 C T ANKHD1 Missense_Mutation p.P2110S 0.13 benign(0.029) TCGA-EE-A181-06 5 139946666 139946666 C T SLC35A4 5'UTR 0.33 TCGA-EE-A181-06 5 140167308 140167308 C T PCDHA1 Missense_Mutation p.S478F 0.18 deleterious_low_confidence(0) possibly_damaging(0.647) TCGA-EE-A181-06 5 140174570 140174570 G A PCDHA2 Silent p.R7R 0.35 TCGA-EE-A181-06 5 140176221 140176221 G A PCDHA2 Missense_Mutation p.E558K 0.16 deleterious_low_confidence(0.02) benign(0.196) TCGA-EE-A181-06 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.55 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A181-06 5 140214884 140214884 G A PCDHA7 Missense_Mutation p.G306R 0.33 deleterious_low_confidence(0.04) benign(0.193) TCGA-EE-A181-06 5 140256285 140256285 G A PCDHA12 Missense_Mutation p.D410N 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.495) TCGA-EE-A181-06 5 140482081 140482081 C G PCDHB3 Silent p.G616G 0.17 TCGA-EE-A181-06 5 140531337 140531337 C T PCDHB6 Missense_Mutation p.S500F 0.22 deleterious(0) probably_damaging(0.984) TCGA-EE-A181-06 5 140553662 140553662 G A PCDHB7 Missense_Mutation p.E416K 0.27 deleterious_low_confidence(0.03) benign(0.017) TCGA-EE-A181-06 5 140559667 140559667 C T PCDHB8 Silent p.A684A 0.25 TCGA-EE-A181-06 5 140579977 140579977 C T PCDHB11 Silent p.F210F 0.20 TCGA-EE-A181-06 5 140626991 140626991 C T PCDHB15 Silent p.F615F 0.18 TCGA-EE-A181-06 5 140711095 140711095 C T PCDHGA1 Missense_Mutation p.H282Y 0.31 tolerated_low_confidence(0.1) possibly_damaging(0.699) TCGA-EE-A181-06 5 140712330 140712330 G A PCDHGA1 Silent p.L693L 0.19 TCGA-EE-A181-06 5 140732168 140732168 C T PCDHGB1 Missense_Mutation p.P781S 0.48 tolerated(0.49) benign(0.114) TCGA-EE-A181-06 5 140736453 140736453 C T PCDHGA4 Silent p.I562I 0.10 TCGA-EE-A181-06 5 140751425 140751425 C T PCDHGB3 Silent p.S488S 0.50 TCGA-EE-A181-06 5 140768882 140768882 G A PCDHGB4 Silent p.P477P 0.31 TCGA-EE-A181-06 5 140774694 140774694 C T PCDHGA8 Nonsense_Mutation p.Q772* 0.19 TCGA-EE-A181-06 5 140784758 140784758 C T PCDHGA9 Nonsense_Mutation p.R747* 0.24 TCGA-EE-A181-06 5 140867061 140867061 C T PCDHGC4 Missense_Mutation p.P774L 0.45 tolerated(0.65) benign(0.032) TCGA-EE-A181-06 5 140869727 140869727 C A PCDHGC5 Missense_Mutation p.P307H 0.09 tolerated(0.12) possibly_damaging(0.505) TCGA-EE-A181-06 5 140885026 140885026 C T PCDHGB6 Silent p.A848A 0.16 TCGA-EE-A181-06 5 140890536 140890536 C T PCDHGB6 Silent p.T863T 0.17 TCGA-EE-A181-06 5 141036104 141036104 A G ARAP3 Silent p.R1252R 0.36 TCGA-EE-A181-06 5 143586232 143586232 G A KCTD16 5'UTR 0.19 TCGA-EE-A181-06 5 1441563 1441563 C T SLC6A3 Missense_Mutation p.G110E 0.23 deleterious(0) probably_damaging(0.939) TCGA-EE-A181-06 5 14477057 14477057 C T TRIO Silent p.S2046S 0.29 TCGA-EE-A181-06 5 145246210 145246210 C T GRXCR2 Missense_Mutation p.D140N 0.18 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A181-06 5 14601330 14601330 G A FAM105A Missense_Mutation p.G78E 0.12 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 5 147019290 147019290 G A JAKMIP2 Nonsense_Mutation p.R479* 0.12 TCGA-EE-A181-06 5 147020381 147020381 A C JAKMIP2 Silent p.P429P 0.20 TCGA-EE-A181-06 5 147024484 147024484 C T JAKMIP2 Missense_Mutation p.D338N 0.26 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A181-06 5 147040907 147040907 G A JAKMIP2 Silent p.L77L 0.20 TCGA-EE-A181-06 5 14758589 14758589 C T ANKH Missense_Mutation p.M144I 0.11 tolerated(0.22) benign(0.087) TCGA-EE-A181-06 5 147863878 147863878 G A HTR4 Missense_Mutation p.P381S 0.18 tolerated_low_confidence(0.25) benign(0) TCGA-EE-A181-06 5 148207009 148207009 C T ADRB2 Silent p.I205I 0.20 TCGA-EE-A181-06 5 148406852 148406852 C T SH3TC2 Missense_Mutation p.A815T 0.20 deleterious(0.02) possibly_damaging(0.858) TCGA-EE-A181-06 5 148619370 148619370 G A ABLIM3 Missense_Mutation p.G375R 0.19 deleterious(0) possibly_damaging(0.726) TCGA-EE-A181-06 5 149755694 149755694 C T TCOF1 Missense_Mutation p.T648I 0.24 tolerated(0.11) probably_damaging(0.958) TCGA-EE-A181-06 5 149925012 149925012 C A NDST1 Silent p.L703L 0.21 TCGA-EE-A181-06 5 150411892 150411892 C T TNIP1 Missense_Mutation p.S611N 0.18 tolerated_low_confidence(0.42) benign(0.154) TCGA-EE-A181-06 5 150488021 150488021 G A ANXA6 Missense_Mutation p.A592V 0.38 deleterious(0.02) benign(0.224) TCGA-EE-A181-06 5 150666980 150666980 C T SLC36A3 Missense_Mutation p.E220K 0.14 tolerated(0.55) benign(0.008) TCGA-EE-A181-06 5 150696446 150696446 C T SLC36A2 Missense_Mutation p.A462T 0.28 tolerated(0.45) possibly_damaging(0.764) TCGA-EE-A181-06 5 150905352 150905352 C T FAT2 Missense_Mutation p.E3495K 0.21 possibly_damaging(0.842) TCGA-EE-A181-06 5 151784696 151784696 C T NMUR2 5'UTR 0.21 TCGA-EE-A181-06 5 152870489 152870489 G A GRIA1 5'Flank 0.41 TCGA-EE-A181-06 5 153414386 153414386 G A FAM114A2 Missense_Mutation p.S43L 0.24 tolerated(0.34) benign(0.003) TCGA-EE-A181-06 5 153432814 153432814 C T MFAP3 Silent p.T210T 0.30 TCGA-EE-A181-06 5 154271173 154271173 G A GEMIN5 Missense_Mutation p.P1297L 0.33 deleterious_low_confidence(0.01) benign(0.18) TCGA-EE-A181-06 5 156746781 156746781 G A CYFIP2 Missense_Mutation p.M430I 0.28 deleterious(0) possibly_damaging(0.786) TCGA-EE-A181-06 5 156921748 156921748 G A ADAM19 Silent p.T550T 0.14 TCGA-EE-A181-06 5 156921749 156921749 G A ADAM19 Missense_Mutation p.T550I 0.14 tolerated(0.24) benign(0.049) TCGA-EE-A181-06 5 156997925 156997925 G A ADAM19 Missense_Mutation p.S53L 0.14 tolerated(0.38) benign(0.002) TCGA-EE-A181-06 5 158250240 158250240 C T EBF1 Missense_Mutation p.G241E 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 5 160757911 160757911 C T GABRB2 Silent p.K352K 0.18 TCGA-EE-A181-06 5 161116108 161116108 C T GABRA6 Missense_Mutation p.H127Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 5 161116152 161116152 T G GABRA6 Missense_Mutation p.N141K 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A181-06 5 161520953 161520953 G A GABRG2 Missense_Mutation p.G76E 0.24 tolerated(0.25) probably_damaging(1) TCGA-EE-A181-06 5 162898382 162898382 A G HMMR Missense_Mutation p.K188R 0.29 tolerated(0.11) possibly_damaging(0.731) TCGA-EE-A181-06 5 162910345 162910345 A T HMMR Missense_Mutation p.E586V 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 5 162910346 162910346 A G HMMR Silent p.E586E 0.10 TCGA-EE-A181-06 5 167645207 167645207 C T TENM2 Silent p.I1437I 0.43 TCGA-EE-A181-06 5 167645621 167645621 T A TENM2 Silent p.P1575P 0.11 TCGA-EE-A181-06 5 167855772 167855772 C T WWC1 Silent p.T660T 0.22 TCGA-EE-A181-06 5 167881016 167881016 G A WWC1 Missense_Mutation p.E857K 0.24 tolerated(0.36) benign(0.079) TCGA-EE-A181-06 5 170222313 170222313 C T GABRP Silent p.F114F 0.21 TCGA-EE-A181-06 5 171327068 171327068 G A FBXW11 Missense_Mutation p.S137L 0.24 deleterious(0.03) benign(0.051) TCGA-EE-A181-06 5 171833335 171833335 G A SH3PXD2B Missense_Mutation p.P60S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 172744747 172744747 C T STC2 3'UTR 0.21 TCGA-EE-A181-06 5 174869174 174869174 G A DRD1 Missense_Mutation p.S310F 0.17 deleterious(0) possibly_damaging(0.781) TCGA-EE-A181-06 5 175525493 175525493 C T FAM153B Missense_Mutation p.H80Y 0.35 tolerated_low_confidence(0.07) benign(0.291) TCGA-EE-A181-06 5 175528076 175528076 G A FAM153B Missense_Mutation p.G120R 0.11 deleterious_low_confidence(0.03) benign(0.02) TCGA-EE-A181-06 5 175772235 175772235 G A SIMC1 Silent p.R387R 0.23 TCGA-EE-A181-06 5 176940065 176940065 C T DDX41 Missense_Mutation p.E417K 0.33 deleterious(0.04) benign(0.161) TCGA-EE-A181-06 5 177690306 177690306 C T COL23A1 Missense_Mutation p.G181E 0.31 deleterious(0) unknown(0) TCGA-EE-A181-06 5 178409996 178409996 G A GRM6 Missense_Mutation p.P784L 0.16 tolerated(0.24) possibly_damaging(0.908) TCGA-EE-A181-06 5 178504150 178504150 C T ZNF354C Missense_Mutation p.P78L 0.27 tolerated(0.57) benign(0.007) TCGA-EE-A181-06 5 179028973 179028973 C T RUFY1 Silent p.G614G 0.17 TCGA-EE-A181-06 5 179306087 179306087 G A TBC1D9B Silent p.I509I 0.15 TCGA-EE-A181-06 5 180040032 180040032 G A FLT4 Missense_Mutation p.P1137L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 180043412 180043412 A T FLT4 Silent p.L1058L 0.19 TCGA-EE-A181-06 5 180582829 180582829 G A OR2V2 Missense_Mutation p.R296K 0.13 tolerated(1) benign(0.097) TCGA-EE-A181-06 5 1815981 1815981 C T NDUFS6 Missense_Mutation p.T109I 0.19 tolerated(0.1) benign(0.209) TCGA-EE-A181-06 5 19473750 19473750 T A CDH18 Missense_Mutation p.E653V 0.16 deleterious(0) possibly_damaging(0.898) TCGA-EE-A181-06 5 23522427 23522427 G A PRDM9 Missense_Mutation p.E175K 0.39 tolerated(0.12) benign(0.02) TCGA-EE-A181-06 5 23522483 23522483 G A PRDM9 Silent p.E193E 0.15 TCGA-EE-A181-06 5 23526565 23526565 C T PRDM9 Silent p.I456I 0.50 TCGA-EE-A181-06 5 23527765 23527765 G A PRDM9 Silent p.G856G 0.20 TCGA-EE-A181-06 5 26885885 26885885 C T CDH9 Missense_Mutation p.D574N 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A181-06 5 32090179 32090179 G A PDZD2 Missense_Mutation p.E2209K 0.23 tolerated(0.06) benign(0.006) TCGA-EE-A181-06 5 32415291 32415291 G A ZFR Silent p.A189A 0.21 TCGA-EE-A181-06 5 35065495 35065495 G A PRLR Missense_Mutation p.S522L 0.18 tolerated(0.17) benign(0.342) TCGA-EE-A181-06 5 35072711 35072711 A G PRLR Missense_Mutation p.I170T 0.13 deleterious(0) possibly_damaging(0.649) TCGA-EE-A181-06 5 35659285 35659285 C T SPEF2 Silent p.F381F 0.29 TCGA-EE-A181-06 5 35709087 35709087 A T SPEF2 Missense_Mutation p.K901N 0.33 tolerated(0.17) possibly_damaging(0.723) TCGA-EE-A181-06 5 35861078 35861078 G A IL7R Silent p.L69L 0.24 TCGA-EE-A181-06 5 35873724 35873724 G A IL7R Missense_Mutation p.R227K 0.35 tolerated(0.22) benign(0.009) TCGA-EE-A181-06 5 35876369 35876369 C T IL7R Silent p.S387S 0.18 TCGA-EE-A181-06 5 35904680 35904680 G A CAPSL Silent p.F198F 0.28 TCGA-EE-A181-06 5 36049010 36049010 G A UGT3A2 Missense_Mutation p.P275L 0.20 deleterious(0.01) benign(0.248) TCGA-EE-A181-06 5 36195254 36195254 C T NADK2 Missense_Mutation p.E441K 0.35 deleterious(0.02) possibly_damaging(0.585) TCGA-EE-A181-06 5 36257608 36257608 C T RANBP3L Silent p.K265K 0.11 TCGA-EE-A181-06 5 37396570 37396570 A C WDR70 Silent p.P130P 0.32 TCGA-EE-A181-06 5 37816136 37816136 C T GDNF Missense_Mutation p.V102M 0.29 tolerated(0.23) benign(0.031) TCGA-EE-A181-06 5 38451442 38451442 T C EGFLAM Missense_Mutation p.F865L 0.15 deleterious(0.04) probably_damaging(0.978) TCGA-EE-A181-06 5 38490359 38490359 G A LIFR Silent p.F700F 0.11 TCGA-EE-A181-06 5 39202605 39202605 G A FYB Missense_Mutation p.P163L 0.18 tolerated(0.23) benign(0.009) TCGA-EE-A181-06 5 39311367 39311367 G A C9 Missense_Mutation p.T328I 0.12 tolerated(0.14) possibly_damaging(0.486) TCGA-EE-A181-06 5 39311419 39311419 G A C9 Missense_Mutation p.R311C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 40947796 40947796 G A C7 Nonsense_Mutation p.W277* 0.36 TCGA-EE-A181-06 5 40981494 40981494 C T C7 Missense_Mutation p.A784V 0.67 tolerated(0.19) benign(0.015) TCGA-EE-A181-06 5 40999860 40999860 G A MROH2B Silent p.L1502L 0.39 TCGA-EE-A181-06 5 41055945 41055945 G A MROH2B Missense_Mutation p.P311L 0.42 deleterious(0) benign(0.007) TCGA-EE-A181-06 5 41061692 41061692 G A MROH2B Missense_Mutation p.P199S 0.10 tolerated(0.58) benign(0.034) TCGA-EE-A181-06 5 41061693 41061693 G A MROH2B Silent p.A198A 0.09 TCGA-EE-A181-06 5 41203290 41203290 G A C6 Silent p.L15L 0.16 TCGA-EE-A181-06 5 41382367 41382367 G A PLCXD3 Missense_Mutation p.L125F 0.41 deleterious(0) probably_damaging(0.967) TCGA-EE-A181-06 5 42719193 42719193 C T GHR Silent p.F528F 0.21 TCGA-EE-A181-06 5 42800775 42800775 G A SEPP1 3'UTR 0.20 TCGA-EE-A181-06 5 42800796 42800796 T G SEPP1 3'UTR 0.18 TCGA-EE-A181-06 5 42801366 42801366 G A SEPP1 Missense_Mutation p.P201L 0.15 tolerated(0.11) benign(0.307) TCGA-EE-A181-06 5 5182167 5182167 T A ADAMTS16 Missense_Mutation p.I171K 0.15 deleterious(0) probably_damaging(0.991) TCGA-EE-A181-06 5 52221138 52221138 G A ITGA1 Missense_Mutation p.E812K 0.15 tolerated(0.19) benign(0.047) TCGA-EE-A181-06 5 54404009 54404009 G A GZMA Silent p.K138K 0.19 TCGA-EE-A181-06 5 54423127 54423127 G A CDC20B Missense_Mutation p.S316L 0.30 deleterious(0) benign(0.312) TCGA-EE-A181-06 5 54710011 54710011 C T SKIV2L2 Missense_Mutation p.S918F 0.13 deleterious(0.01) possibly_damaging(0.877) TCGA-EE-A181-06 5 54786856 54786856 G A PPAP2A Missense_Mutation p.P49S 0.46 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A181-06 5 54923757 54923757 G A SLC38A9 Silent p.I494I 0.22 TCGA-EE-A181-06 5 55212650 55212650 G A IL31RA Missense_Mutation p.G666E 0.28 tolerated(0.15) benign(0.178) TCGA-EE-A181-06 5 55251907 55251907 G A IL6ST Missense_Mutation p.L405F 0.22 tolerated(0.7) benign(0.019) TCGA-EE-A181-06 5 55398338 55398338 G A ANKRD55 Missense_Mutation p.P569L 0.12 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A181-06 5 55472069 55472069 C T ANKRD55 Silent p.A74A 0.31 TCGA-EE-A181-06 5 56778064 56778064 C T ACTBL2 Silent p.G157G 0.20 TCGA-EE-A181-06 5 61689822 61689822 C T DIMT1 Missense_Mutation p.R208K 0.23 tolerated(0.11) possibly_damaging(0.742) TCGA-EE-A181-06 5 64483978 64483978 G A ADAMTS6 Silent p.L925L 0.11 TCGA-EE-A181-06 5 6600194 6600194 G A NSUN2 Missense_Mutation p.L717F 0.51 tolerated(0.08) benign(0.142) TCGA-EE-A181-06 5 6620226 6620226 G A NSUN2 Missense_Mutation p.P270S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 5 6620227 6620227 G A NSUN2 Silent p.V269V 0.10 TCGA-EE-A181-06 5 67592093 67592093 C T PIK3R1 Silent p.L637L 0.19 TCGA-EE-A181-06 5 68412345 68412345 C T SLC30A5 Silent p.I399I 0.44 TCGA-EE-A181-06 5 68578698 68578698 G A CCDC125 Missense_Mutation p.S465F 0.18 tolerated(0.31) possibly_damaging(0.571) TCGA-EE-A181-06 5 70785300 70785300 C G BDP1 Missense_Mutation p.T428R 0.23 tolerated(0.06) probably_damaging(0.909) TCGA-EE-A181-06 5 70811919 70811919 A T BDP1 Missense_Mutation p.M1561L 0.42 tolerated(0.16) benign(0.002) TCGA-EE-A181-06 5 71493356 71493356 G A MAP1B Missense_Mutation p.E1392K 0.20 probably_damaging(0.993) TCGA-EE-A181-06 5 71494963 71494963 G T MAP1B Silent p.G1927G 0.20 TCGA-EE-A181-06 5 74647374 74647374 C T HMGCR Missense_Mutation p.P439S 0.20 tolerated(0.23) benign(0.001) TCGA-EE-A181-06 5 74892785 74892785 T C POLK Missense_Mutation p.V756A 0.24 tolerated(0.93) benign(0.001) TCGA-EE-A181-06 5 75936908 75936908 G A IQGAP2 Missense_Mutation p.E692K 0.18 tolerated(0.08) benign(0.005) TCGA-EE-A181-06 5 75970407 75970407 C T IQGAP2 Nonsense_Mutation p.Q1134* 0.28 TCGA-EE-A181-06 5 76506853 76506853 G A PDE8B Missense_Mutation p.G35S 0.31 tolerated_low_confidence(0.07) probably_damaging(0.984) TCGA-EE-A181-06 5 79024849 79024849 C T CMYA5 Silent p.T87T 0.17 TCGA-EE-A181-06 5 79030768 79030768 G A CMYA5 Silent p.V2060V 0.16 TCGA-EE-A181-06 5 79354581 79354581 C T THBS4 Silent p.L234L 0.18 TCGA-EE-A181-06 5 80553664 80553664 G A CKMT2 Missense_Mutation p.G290R 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 5 80626289 80626289 G A ACOT12 Missense_Mutation p.S531F 0.49 deleterious(0) probably_damaging(0.919) TCGA-EE-A181-06 5 80655711 80655711 G A ACOT12 Intron 0.13 TCGA-EE-A181-06 5 81283382 81283382 C T ATG10 5'UTR 0.16 TCGA-EE-A181-06 5 82834415 82834415 G A VCAN Missense_Mutation p.E1865K 0.21 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A181-06 5 896848 896848 T G TRIP13 Missense_Mutation p.S109R 0.29 tolerated(0.23) benign(0.058) TCGA-EE-A181-06 5 89949105 89949105 C T GPR98 Silent p.P1238P 0.20 TCGA-EE-A181-06 5 90002143 90002143 C T GPR98 Missense_Mutation p.P2888S 0.21 benign(0.015) TCGA-EE-A181-06 5 92923755 92923755 C T NR2F1 Missense_Mutation p.P199L 0.39 deleterious(0) possibly_damaging(0.904) TCGA-EE-A181-06 5 94030940 94030941 GT - ANKRD32 Frame_Shift_Del p.C1035Sfs*6 0.15 TCGA-EE-A181-06 5 94230396 94230396 G A MCTP1 Silent p.S599S 0.26 TCGA-EE-A181-06 5 94230510 94230510 C T MCTP1 Silent p.R561R 0.24 TCGA-EE-A181-06 5 95757642 95757642 C T PCSK1 Missense_Mutation p.D188N 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 5 96430739 96430739 C T LIX1 Missense_Mutation p.E188K 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A181-06 5 96512891 96512891 T C RIOK2 Missense_Mutation p.K143E 0.20 deleterious(0.02) benign(0.217) TCGA-EE-A181-06 5 98212152 98212152 C T CHD1 Silent p.R1116R 0.22 TCGA-EE-A181-06 6 100841367 100841367 G A SIM1 Silent p.I522I 0.19 TCGA-EE-A181-06 6 101086613 101086613 G A ASCC3 Missense_Mutation p.P1329L 0.32 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 6 102307252 102307252 T C GRIK2 Silent p.L470L 0.46 TCGA-EE-A181-06 6 106543594 106543594 G A PRDM1 Silent p.R132R 0.24 TCGA-EE-A181-06 6 107365516 107365516 T G C6orf203 Missense_Mutation p.L180V 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A181-06 6 10818140 10818140 T C MAK Missense_Mutation p.H74R 0.12 deleterious(0.04) possibly_damaging(0.501) TCGA-EE-A181-06 6 10876690 10876690 C T GCM2 Silent p.A148A 0.09 TCGA-EE-A181-06 6 108985446 108985446 C T FOXO3 Silent p.L470L 0.19 TCGA-EE-A181-06 6 110714134 110714134 G A DDO Silent p.L318L 0.24 TCGA-EE-A181-06 6 110726085 110726085 C T DDO Missense_Mutation p.R145Q 0.33 deleterious(0.02) possibly_damaging(0.79) TCGA-EE-A181-06 6 111345505 111345505 C T RPF2 Missense_Mutation p.S239F 0.19 deleterious(0) possibly_damaging(0.823) TCGA-EE-A181-06 6 116446585 116446585 C T COL10A1 Missense_Mutation p.R24Q 0.31 tolerated_low_confidence(0.19) unknown(0) TCGA-EE-A181-06 6 116836826 116836826 C T FAM26E Missense_Mutation p.R202C 0.24 deleterious(0) probably_damaging(0.961) TCGA-EE-A181-06 6 116836887 116836887 A T FAM26E Missense_Mutation p.E222V 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 117662625 117662625 G A ROS1 Missense_Mutation p.P1614S 0.26 deleterious(0.05) benign(0.209) TCGA-EE-A181-06 6 117662645 117662645 G A ROS1 Missense_Mutation p.P1607L 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 11778910 11778910 C T ADTRP Missense_Mutation p.G28E 0.12 tolerated(0.43) benign(0.03) TCGA-EE-A181-06 6 11778911 11778911 C T ADTRP Missense_Mutation p.G28R 0.09 tolerated(0.36) benign(0.03) TCGA-EE-A181-06 6 11778913 11778913 T A ADTRP Missense_Mutation p.E27V 0.10 tolerated(0.4) benign(0.007) TCGA-EE-A181-06 6 121613284 121613284 G A TBC1D32 Silent p.F429F 0.18 TCGA-EE-A181-06 6 12164072 12164072 C T HIVEP1 Missense_Mutation p.P2512L 0.44 deleterious(0.03) probably_damaging(1) TCGA-EE-A181-06 6 123369870 123369870 G A CLVS2 Missense_Mutation p.R223Q 0.19 tolerated(0.19) benign(0.105) TCGA-EE-A181-06 6 126319784 126319784 C T TRMT11 Missense_Mutation p.P159L 0.28 tolerated(0.11) benign(0.031) TCGA-EE-A181-06 6 127770989 127770989 G A KIAA0408 Nonsense_Mutation p.R186* 0.17 TCGA-EE-A181-06 6 127796835 127796835 C T SOGA3 Missense_Mutation p.G779D 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 6 127797031 127797031 C T SOGA3 Missense_Mutation p.E714K 0.25 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A181-06 6 127837056 127837056 C T SOGA3 Missense_Mutation p.G235E 0.12 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-EE-A181-06 6 129636758 129636758 A T LAMA2 Missense_Mutation p.E1231D 0.23 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A181-06 6 129637182 129637182 G A LAMA2 Splice_Site p.X1309_splice 0.34 TCGA-EE-A181-06 6 130536453 130536453 G A SAMD3 Intron 0.50 TCGA-EE-A181-06 6 131995398 131995398 C T ENPP3 Missense_Mutation p.P247S 0.27 tolerated(0.13) possibly_damaging(0.517) TCGA-EE-A181-06 6 132181527 132181527 G A ENPP1 Missense_Mutation p.G266R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 132196982 132196982 G A ENPP1 Missense_Mutation p.E568K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 6 13365590 13365590 G A GFOD1 Silent p.F186F 0.20 TCGA-EE-A181-06 6 135517065 135517065 C T MYB Silent p.I376I 0.36 TCGA-EE-A181-06 6 136597560 136597560 T A BCLAF1 Missense_Mutation p.K368I 0.13 deleterious(0) possibly_damaging(0.844) TCGA-EE-A181-06 6 136704882 136704882 C T MAP7 Silent p.S210S 0.33 TCGA-EE-A181-06 6 137191066 137191066 A G PEX7 Silent p.R224R 0.28 TCGA-EE-A181-06 6 137338107 137338107 G A IL20RA Silent p.F74F 0.26 TCGA-EE-A181-06 6 137338238 137338238 G A IL20RA Missense_Mutation p.P31S 0.67 tolerated(0.26) benign(0.302) TCGA-EE-A181-06 6 139609972 139609972 G A TXLNB Missense_Mutation p.S22L 0.19 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-EE-A181-06 6 144812176 144812176 C T UTRN Missense_Mutation p.H1459Y 0.18 tolerated(0.12) benign(0.007) TCGA-EE-A181-06 6 152651014 152651014 A G SYNE1 Missense_Mutation p.S4936P 0.16 probably_damaging(0.998) TCGA-EE-A181-06 6 152716751 152716751 A G SYNE1 Missense_Mutation p.F2538L 0.22 benign(0) TCGA-EE-A181-06 6 152737772 152737772 G A SYNE1 Nonsense_Mutation p.Q1934* 0.42 TCGA-EE-A181-06 6 153019176 153019176 G A MYCT1 Missense_Mutation p.D47N 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.628) TCGA-EE-A181-06 6 153365070 153365070 A G RGS17 Silent p.C28C 0.21 TCGA-EE-A181-06 6 154412548 154412548 C T OPRM1 Missense_Mutation p.R462C 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A181-06 6 157505554 157505554 C T ARID1B Nonsense_Mutation p.Q1179* 0.32 TCGA-EE-A181-06 6 158514098 158514098 C T SYNJ2 Missense_Mutation p.P1236S 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A181-06 6 159190428 159190428 G A EZR Missense_Mutation p.T425I 0.25 tolerated(0.08) benign(0.178) TCGA-EE-A181-06 6 160671584 160671584 G A SLC22A2 Silent p.I223I 0.28 TCGA-EE-A181-06 6 161139393 161139393 G A PLG Silent p.G285G 0.28 TCGA-EE-A181-06 6 165712932 165712932 C T C6orf118 Silent p.E312E 0.32 TCGA-EE-A181-06 6 169632811 169632811 C T THBS2 Missense_Mutation p.R627K 0.20 tolerated(1) benign(0) TCGA-EE-A181-06 6 169648950 169648950 G A THBS2 Silent p.F57F 0.25 TCGA-EE-A181-06 6 170160786 170160786 C T ERMARD Missense_Mutation p.S264F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 6 17291987 17291987 G A RBM24 Silent p.G116G 0.12 TCGA-EE-A181-06 6 17794897 17794897 G A KIF13A Missense_Mutation p.S994F 0.21 deleterious(0.01) benign(0.039) TCGA-EE-A181-06 6 18463533 18463533 C T RNF144B Silent p.F231F 0.11 TCGA-EE-A181-06 6 24475400 24475400 G A GPLD1 Silent p.V130V 0.14 TCGA-EE-A181-06 6 24503518 24503518 G A ALDH5A1 Missense_Mutation p.E156K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 24716492 24716492 C T C6orf62 Missense_Mutation p.E64K 0.08 tolerated(0.18) benign(0.12) TCGA-EE-A181-06 6 25619835 25619835 C T LRRC16A 3'UTR 0.10 TCGA-EE-A181-06 6 25801130 25801130 C T SLC17A1 Silent p.L419L 0.11 TCGA-EE-A181-06 6 25801146 25801146 G A SLC17A1 Missense_Mutation p.S414F 0.11 deleterious(0.02) probably_damaging(0.94) TCGA-EE-A181-06 6 25811766 25811766 G A SLC17A1 Silent p.L346L 0.16 TCGA-EE-A181-06 6 25845608 25845608 C A SLC17A3 Intron 0.14 TCGA-EE-A181-06 6 26123986 26123986 G A HIST1H2BC Silent p.V49V 0.12 TCGA-EE-A181-06 6 26247194 26247194 C T HIST1H4G Silent p.R4R 0.12 TCGA-EE-A181-06 6 26408020 26408020 G A BTN3A1 Silent p.E185E 0.17 TCGA-EE-A181-06 6 26452256 26452256 C T BTN3A3 Missense_Mutation p.P458S 0.15 deleterious(0) possibly_damaging(0.851) TCGA-EE-A181-06 6 27419126 27419126 G A ZNF184 Missense_Mutation p.R738C 0.10 tolerated(0.06) possibly_damaging(0.884) TCGA-EE-A181-06 6 27879307 27879307 G A OR2B2 Missense_Mutation p.S264L 0.13 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 6 27879370 27879370 G A OR2B2 Missense_Mutation p.S243F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 27925191 27925191 C T OR2B6 Missense_Mutation p.P58L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 27925360 27925360 C T OR2B6 Silent p.L114L 0.13 TCGA-EE-A181-06 6 27925897 27925897 G A OR2B6 Silent p.R293R 0.24 TCGA-EE-A181-06 6 28056442 28056442 G A ZNF165 Missense_Mutation p.E218K 0.16 tolerated(0.06) probably_damaging(0.978) TCGA-EE-A181-06 6 28542481 28542481 T C SCAND3 Silent p.K667K 0.11 TCGA-EE-A181-06 6 28543486 28543486 C T SCAND3 Silent p.A332A 0.10 TCGA-EE-A181-06 6 29012353 29012353 G A OR2W1 Silent p.F200F 0.48 TCGA-EE-A181-06 6 29054169 29054169 T C OR2B3 Missense_Mutation p.N286S 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A181-06 6 29364563 29364563 C T OR12D2 Silent p.F29F 0.12 TCGA-EE-A181-06 6 29364593 29364593 G A OR12D2 Silent p.G39G 0.12 TCGA-EE-A181-06 6 29430158 29430158 C T OR2H1 Silent p.F204F 0.14 TCGA-EE-A181-06 6 29524025 29524025 G A UBD Missense_Mutation p.P44S 0.18 tolerated(0.06) benign(0.21) TCGA-EE-A181-06 6 29797461 29797461 C T HLA-G Silent p.L296L 0.16 TCGA-EE-A181-06 6 30134964 30134964 G A TRIM15 Silent p.R131R 0.20 TCGA-EE-A181-06 6 30309717 30309717 C T TRIM39 Missense_Mutation p.S413F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 304638 304638 G A DUSP22 Missense_Mutation p.G11D 0.09 tolerated(0.08) benign(0.007) TCGA-EE-A181-06 6 30668221 30668221 G A MDC1 3'UTR 0.13 TCGA-EE-A181-06 6 30668266 30668266 G A MDC1 Silent p.S2082S 0.13 TCGA-EE-A181-06 6 30672849 30672849 G A MDC1 Missense_Mutation p.P1371S 0.12 tolerated(0.2) probably_damaging(0.915) TCGA-EE-A181-06 6 30857032 30857032 C T DDR1 Missense_Mutation p.P81L 0.16 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 6 30954473 30954473 C T MUC21 Missense_Mutation p.S174F 0.12 tolerated(0.12) unknown(0) TCGA-EE-A181-06 6 31130295 31130295 C T TCF19 Missense_Mutation p.P280L 0.09 tolerated(0.07) possibly_damaging(0.908) TCGA-EE-A181-06 6 31499098 31499098 G A DDX39B Missense_Mutation p.H318Y 0.16 tolerated(0.1) possibly_damaging(0.729) TCGA-EE-A181-06 6 31671070 31671070 G - ABHD16A 5'UTR 0.41 TCGA-EE-A181-06 6 31675736 31675736 G A LY6G6F Silent p.V157V 0.27 TCGA-EE-A181-06 6 31677893 31677893 G A LY6G6F Missense_Mutation p.G246E 0.13 deleterious(0.05) probably_damaging(0.972) TCGA-EE-A181-06 6 31677949 31677949 C T LY6G6F Missense_Mutation p.P265S 0.09 tolerated(0.21) benign(0) TCGA-EE-A181-06 6 31696838 31696838 G A DDAH2 Missense_Mutation p.P34L 0.16 tolerated(0.26) benign(0.055) TCGA-EE-A181-06 6 31725827 31725827 C T MSH5 Intron 0.17 TCGA-EE-A181-06 6 31735472 31735472 C T VWA7 Silent p.V521V 0.13 TCGA-EE-A181-06 6 31747781 31747781 G A VARS Silent p.V1025V 0.15 TCGA-EE-A181-06 6 31750958 31750958 C T VARS Silent p.L559L 0.09 TCGA-EE-A181-06 6 31827673 31827673 C T NEU1 Silent p.R357R 0.12 TCGA-EE-A181-06 6 31831496 31831496 G A SLC44A4 Silent p.L681L 0.10 TCGA-EE-A181-06 6 31842599 31842599 C T SLC44A4 Missense_Mutation p.D123N 0.12 tolerated(0.09) benign(0.001) TCGA-EE-A181-06 6 31901725 31901725 C T CFB Missense_Mutation p.P171L 0.13 tolerated_low_confidence(0.5) benign(0.011) TCGA-EE-A181-06 6 31911087 31911087 C A CFB Silent p.V329V 0.13 TCGA-EE-A181-06 6 31922531 31922531 G A NELFE Silent p.S181S 0.15 TCGA-EE-A181-06 6 31926882 31926882 C T SKIV2L 5'UTR 0.13 TCGA-EE-A181-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.29 TCGA-EE-A181-06 6 31940079 31940079 G A STK19 Missense_Mutation p.G74E 0.11 tolerated_low_confidence(0.57) benign(0) TCGA-EE-A181-06 6 32012952 32012952 G A TNXB Silent p.F15F 0.10 TCGA-EE-A181-06 6 32036433 32036433 G A TNXB Missense_Mutation p.P1985L 0.24 probably_damaging(0.96) TCGA-EE-A181-06 6 32037356 32037356 C T TNXB Missense_Mutation p.G1854D 0.25 probably_damaging(0.999) TCGA-EE-A181-06 6 32037969 32037969 C T TNXB Missense_Mutation p.R1738K 0.08 probably_damaging(0.97) TCGA-EE-A181-06 6 32057124 32057124 C T TNXB Silent p.R797R 0.13 TCGA-EE-A181-06 6 32083537 32083537 G A ATF6B Silent p.P697P 0.11 TCGA-EE-A181-06 6 32096866 32096866 C T FKBPL Missense_Mutation p.R231Q 0.11 tolerated(0.1) benign(0.43) TCGA-EE-A181-06 6 32159205 32159205 T C GPSM3 Missense_Mutation p.R141G 0.10 deleterious(0) benign(0.324) TCGA-EE-A181-06 6 33136775 33136775 C T COL11A2 Missense_Mutation p.G1184D 0.10 unknown(0) TCGA-EE-A181-06 6 33148078 33148078 G A COL11A2 Missense_Mutation p.S353L 0.12 possibly_damaging(0.504) TCGA-EE-A181-06 6 33177361 33177361 C T RING1 Intron 0.13 TCGA-EE-A181-06 6 34741339 34741339 G A SNRPC Missense_Mutation p.D158N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-EE-A181-06 6 34985818 34985818 C T ANKS1A Silent p.F664F 0.12 TCGA-EE-A181-06 6 35209380 35209380 C T SCUBE3 Missense_Mutation p.S419F 0.09 deleterious(0.01) benign(0.058) TCGA-EE-A181-06 6 35476999 35476999 C T TULP1 Missense_Mutation p.G270E 0.12 deleterious(0.02) possibly_damaging(0.801) TCGA-EE-A181-06 6 35477063 35477063 C T TULP1 Missense_Mutation p.E249K 0.13 tolerated(0.7) possibly_damaging(0.543) TCGA-EE-A181-06 6 35911850 35911850 G A SLC26A8 Missense_Mutation p.P914S 0.12 tolerated_low_confidence(0.12) benign(0) TCGA-EE-A181-06 6 36027100 36027100 G A MAPK14 Missense_Mutation p.R94K 0.30 tolerated(0.85) benign(0) TCGA-EE-A181-06 6 36449483 36449483 C T KCTD20 Missense_Mutation p.S268F 0.16 deleterious(0.04) possibly_damaging(0.459) TCGA-EE-A181-06 6 36566732 36566732 C T SRSF3 Missense_Mutation p.R105C 0.14 deleterious(0) unknown(0) TCGA-EE-A181-06 6 36995831 36995831 C T FGD2 Silent p.T620T 0.17 TCGA-EE-A181-06 6 37414221 37414221 C T CMTR1 Missense_Mutation p.P147L 0.20 tolerated(0.27) possibly_damaging(0.858) TCGA-EE-A181-06 6 38702357 38702357 C T DNAH8 Missense_Mutation p.R23C 0.10 probably_damaging(0.932) TCGA-EE-A181-06 6 38813489 38813489 G A DNAH8 Missense_Mutation p.G1445E 0.12 benign(0.034) TCGA-EE-A181-06 6 38830154 38830154 G A DNAH8 Missense_Mutation p.G1860E 0.47 probably_damaging(1) TCGA-EE-A181-06 6 38883028 38883028 G A DNAH8 Missense_Mutation p.E3122K 0.09 benign(0.135) TCGA-EE-A181-06 6 38950159 38950159 C T DNAH8 Missense_Mutation p.P4074L 0.10 probably_damaging(0.956) TCGA-EE-A181-06 6 39024171 39024171 A C GLP1R Splice_Site p.X27_splice 0.23 TCGA-EE-A181-06 6 39073498 39073498 G A SAYSD1 Missense_Mutation p.P88S 0.18 tolerated(0.14) possibly_damaging(0.526) TCGA-EE-A181-06 6 39607458 39607458 C T KIF6 Silent p.G109G 0.22 TCGA-EE-A181-06 6 39607459 39607459 C T KIF6 Missense_Mutation p.G109E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 39682520 39682520 C T KIF6 Missense_Mutation p.D67N 0.10 tolerated(0.13) benign(0.014) TCGA-EE-A181-06 6 40359793 40359793 C T LRFN2 Silent p.T753T 0.09 TCGA-EE-A181-06 6 40399545 40399545 G A LRFN2 Silent p.A436A 0.15 TCGA-EE-A181-06 6 40399678 40399678 G A LRFN2 Missense_Mutation p.P392L 0.13 deleterious(0.04) benign(0.334) TCGA-EE-A181-06 6 40400047 40400047 C T LRFN2 Missense_Mutation p.G269E 0.15 tolerated(1) benign(0.002) TCGA-EE-A181-06 6 40400048 40400048 C T LRFN2 Missense_Mutation p.G269R 0.15 tolerated(0.26) benign(0.053) TCGA-EE-A181-06 6 4042723 4042723 T C PRPF4B Missense_Mutation p.L524P 0.12 deleterious(0.01) possibly_damaging(0.766) TCGA-EE-A181-06 6 41029481 41029481 G A APOBEC2 Silent p.Q182Q 0.09 TCGA-EE-A181-06 6 41243820 41243820 G A TREM1 3'UTR 0.30 TCGA-EE-A181-06 6 41738703 41738703 G A FRS3 Missense_Mutation p.A378V 0.41 tolerated(0.45) benign(0.043) TCGA-EE-A181-06 6 42627584 42627584 C T UBR2 Nonsense_Mutation p.Q1145* 0.13 TCGA-EE-A181-06 6 42992834 42992834 C T RRP36 Missense_Mutation p.P81L 0.32 deleterious(0.03) benign(0.052) TCGA-EE-A181-06 6 43034082 43034082 G A KLC4 Missense_Mutation p.G222R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 6 43096813 43096813 C T PTK7 Missense_Mutation p.P68S 0.26 tolerated(0.73) benign(0.002) TCGA-EE-A181-06 6 43109755 43109755 C T PTK7 Missense_Mutation p.P627S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 43188298 43188298 C T CUL9 Silent p.F2128F 0.14 TCGA-EE-A181-06 6 43305007 43305007 G A ZNF318 Silent p.S2243S 0.32 TCGA-EE-A181-06 6 43306630 43306630 A G ZNF318 Silent p.S1702S 0.12 TCGA-EE-A181-06 6 43307388 43307388 G A ZNF318 Missense_Mutation p.P1450S 0.19 probably_damaging(0.999) TCGA-EE-A181-06 6 43308574 43308574 G A ZNF318 Missense_Mutation p.S1150F 0.45 probably_damaging(0.999) TCGA-EE-A181-06 6 43309940 43309940 G A ZNF318 Missense_Mutation p.P1096S 0.14 probably_damaging(0.918) TCGA-EE-A181-06 6 43968745 43968745 T G C6orf223 Intron 0.20 TCGA-EE-A181-06 6 44250045 44250045 G A TCTE1 Silent p.S366S 0.28 TCGA-EE-A181-06 6 44922332 44922332 G A SUPT3H Missense_Mutation p.S209F 0.13 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A181-06 6 46135445 46135445 G A ENPP5 Silent p.L185L 0.14 TCGA-EE-A181-06 6 46190861 46190861 G A RCAN2 3'UTR 0.13 TCGA-EE-A181-06 6 46630223 46630223 G A SLC25A27 Missense_Mutation p.G165E 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 6 46682279 46682279 T C PLA2G7 Missense_Mutation p.T130A 0.10 tolerated(0.4) benign(0.014) TCGA-EE-A181-06 6 46826049 46826049 G A GPR116 Silent p.I1197I 0.10 TCGA-EE-A181-06 6 46851844 46851844 G A GPR116 Silent p.L165L 0.12 TCGA-EE-A181-06 6 46852000 46852000 G A GPR116 Missense_Mutation p.P113S 0.19 tolerated(0.27) benign(0.091) TCGA-EE-A181-06 6 46874485 46874485 C A GPR116 Missense_Mutation p.R5S 0.19 tolerated(0.39) benign(0.008) TCGA-EE-A181-06 6 46874486 46874486 C T GPR116 Missense_Mutation p.R5K 0.19 tolerated(0.84) benign(0.001) TCGA-EE-A181-06 6 46996801 46996801 C T GPR110 5'UTR 0.20 TCGA-EE-A181-06 6 47251714 47251714 G A TNFRSF21 Silent p.T401T 0.12 TCGA-EE-A181-06 6 47251715 47251715 G A TNFRSF21 Missense_Mutation p.T401I 0.12 tolerated(0.05) benign(0.023) TCGA-EE-A181-06 6 47544323 47544323 G A CD2AP Missense_Mutation p.E265K 0.11 deleterious(0.03) benign(0.003) TCGA-EE-A181-06 6 47647918 47647918 T C GPR111 Missense_Mutation p.S195P 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A181-06 6 47650089 47650089 G A GPR111 Nonsense_Mutation p.W598* 0.42 TCGA-EE-A181-06 6 47749898 47749898 G A OPN5 Silent p.A32A 0.13 TCGA-EE-A181-06 6 47754269 47754269 G A OPN5 Missense_Mutation p.G50E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 47776108 47776108 G A OPN5 Silent p.K325K 0.12 TCGA-EE-A181-06 6 47846101 47846101 C T PTCHD4 Missense_Mutation p.E827K 0.09 tolerated(0.38) probably_damaging(0.931) TCGA-EE-A181-06 6 47846657 47846657 G A PTCHD4 Silent p.I641I 0.09 TCGA-EE-A181-06 6 48036002 48036002 C T PTCHD4 Silent p.G130G 0.10 TCGA-EE-A181-06 6 49425457 49425457 G A MUT Missense_Mutation p.P234S 0.12 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A181-06 6 49582466 49582466 G A RHAG Silent p.L247L 0.16 TCGA-EE-A181-06 6 49583458 49583458 C T RHAG Silent p.T173T 0.15 TCGA-EE-A181-06 6 49604504 49604504 T C RHAG Missense_Mutation p.M8V 0.10 tolerated(1) benign(0.001) TCGA-EE-A181-06 6 49698930 49698930 C T CRISP3 Missense_Mutation p.E209K 0.14 tolerated(1) benign(0.006) TCGA-EE-A181-06 6 4998971 4998971 G A RPP40 Missense_Mutation p.L180F 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 6 50803776 50803776 C T TFAP2B Missense_Mutation p.P202S 0.10 tolerated(0.07) benign(0.039) TCGA-EE-A181-06 6 51712650 51712650 G A PKHD1 Missense_Mutation p.P2677L 0.12 tolerated(0.42) benign(0.005) TCGA-EE-A181-06 6 51907681 51907681 C A PKHD1 Nonsense_Mutation p.E1025* 0.36 TCGA-EE-A181-06 6 52052459 52052459 G A IL17A Missense_Mutation p.R29Q 0.14 tolerated(1) benign(0.001) TCGA-EE-A181-06 6 52144289 52144289 G A MCM3 Missense_Mutation p.P259S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 53517009 53517009 C T KLHL31 Missense_Mutation p.G431E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 53785519 53785519 G A LRRC1 Missense_Mutation p.R459Q 0.40 tolerated(1) benign(0.013) TCGA-EE-A181-06 6 54185388 54185388 G A TINAG Missense_Mutation p.D123N 0.13 tolerated(0.52) benign(0.008) TCGA-EE-A181-06 6 54186101 54186101 C T TINAG Silent p.C142C 0.17 TCGA-EE-A181-06 6 54791295 54791295 A G FAM83B Missense_Mutation p.M191V 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 6 54805944 54805944 C T FAM83B Silent p.T725T 0.13 TCGA-EE-A181-06 6 55039502 55039502 C T HCRTR2 Silent p.F39F 0.30 TCGA-EE-A181-06 6 55113544 55113544 A T HCRTR2 Missense_Mutation p.T111S 0.13 tolerated(0.67) benign(0.124) TCGA-EE-A181-06 6 55196626 55196626 G A GFRAL Missense_Mutation p.E46K 0.15 deleterious(0.03) benign(0.167) TCGA-EE-A181-06 6 55264064 55264064 C T GFRAL Missense_Mutation p.P347S 0.17 tolerated(0.68) benign(0.007) TCGA-EE-A181-06 6 55360292 55360292 G A HMGCLL1 Silent p.I270I 0.12 TCGA-EE-A181-06 6 55625330 55625330 A T BMP5 Missense_Mutation p.D343E 0.32 tolerated(0.31) benign(0.012) TCGA-EE-A181-06 6 55638866 55638866 G A BMP5 Silent p.S336S 0.38 TCGA-EE-A181-06 6 55925823 55925823 C T COL21A1 Missense_Mutation p.G740R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 55990387 55990387 G A COL21A1 Missense_Mutation p.S543L 0.20 tolerated(0.41) benign(0.004) TCGA-EE-A181-06 6 56035891 56035891 G A COL21A1 Missense_Mutation p.R226C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 63990034 63990034 C T LGSN Silent p.Q474Q 0.19 TCGA-EE-A181-06 6 66200553 66200553 A T EYS Missense_Mutation p.F266I 0.34 tolerated(0.45) probably_damaging(0.943) TCGA-EE-A181-06 6 69758097 69758097 C T BAI3 Missense_Mutation p.P710S 0.18 deleterious(0.02) benign(0.016) TCGA-EE-A181-06 6 70890372 70890372 G A COL19A1 Missense_Mutation p.G911E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 70916990 70916990 G A COL19A1 3'UTR 0.21 TCGA-EE-A181-06 6 70961998 70961998 C T COL9A1 Silent p.G595G 0.20 TCGA-EE-A181-06 6 70984465 70984465 C T COL9A1 Missense_Mutation p.G329E 0.49 probably_damaging(1) TCGA-EE-A181-06 6 7373626 7373626 C T CAGE1 Missense_Mutation p.E476K 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A181-06 6 7373627 7373627 C T CAGE1 Silent p.R475R 0.10 TCGA-EE-A181-06 6 73905064 73905064 G A KCNQ5 Missense_Mutation p.R928Q 0.62 tolerated_low_confidence(0.36) benign(0.011) TCGA-EE-A181-06 6 74123753 74123753 A C DDX43 Silent p.G519G 0.41 TCGA-EE-A181-06 6 74123754 74123754 G A DDX43 Missense_Mutation p.D520N 0.42 tolerated(1) benign(0.02) TCGA-EE-A181-06 6 7572181 7572181 G A DSP Missense_Mutation p.M670I 0.13 benign(0) TCGA-EE-A181-06 6 75801230 75801230 C T COL12A1 Silent p.G2887G 0.22 TCGA-EE-A181-06 6 75884929 75884929 G A COL12A1 Silent p.L845L 0.24 TCGA-EE-A181-06 6 75904613 75904613 G A COL12A1 Missense_Mutation p.H42Y 0.27 possibly_damaging(0.58) TCGA-EE-A181-06 6 76023567 76023567 C T FILIP1 Missense_Mutation p.D661N 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A181-06 6 84618798 84618798 C T CYB5R4 Missense_Mutation p.A134V 0.15 tolerated(0.21) benign(0.012) TCGA-EE-A181-06 6 88265152 88265152 G A RARS2 Silent p.P123P 0.38 TCGA-EE-A181-06 6 88854370 88854370 G A CNR1 Silent p.F208F 0.17 TCGA-EE-A181-06 6 88854382 88854382 C T CNR1 Silent p.V204V 0.29 TCGA-EE-A181-06 6 90382348 90382348 G A MDN1 Silent p.L4516L 0.29 TCGA-EE-A181-06 6 90411664 90411664 C T MDN1 Silent p.L2755L 0.40 TCGA-EE-A181-06 6 90605509 90605509 G A GJA10 Missense_Mutation p.R441Q 0.25 tolerated(0.08) benign(0.037) TCGA-EE-A181-06 6 94120510 94120510 C T EPHA7 Missense_Mutation p.G181R 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 6 96034656 96034656 C T MANEA Missense_Mutation p.P114L 0.60 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A181-06 6 96651086 96651086 C T FUT9 Silent p.L19L 0.25 TCGA-EE-A181-06 6 96651129 96651129 C T FUT9 Missense_Mutation p.T33I 0.17 deleterious(0.05) benign(0.177) TCGA-EE-A181-06 7 100031238 100031238 A C MEPCE 3'UTR 0.24 TCGA-EE-A181-06 7 100175158 100175158 G A LRCH4 Silent p.S380S 0.08 TCGA-EE-A181-06 7 100200102 100200102 C T PCOLCE Missense_Mutation p.S8F 0.16 tolerated(0.06) benign(0.004) TCGA-EE-A181-06 7 100349969 100349969 C T ZAN Silent p.I747I 0.64 TCGA-EE-A181-06 7 100456718 100456718 C T SLC12A9 Silent p.V304V 0.11 TCGA-EE-A181-06 7 100482420 100482420 G A SRRT Silent p.K334K 0.10 TCGA-EE-A181-06 7 100678878 100678878 G A MUC17 Missense_Mutation p.G1394E 0.11 unknown(0) TCGA-EE-A181-06 7 100685956 100685956 C T MUC17 Silent p.T3753T 0.14 TCGA-EE-A181-06 7 100686365 100686365 C T MUC17 Missense_Mutation p.P3890S 0.14 benign(0) TCGA-EE-A181-06 7 100841934 100841934 C - MOGAT3 Frame_Shift_Del p.V156Sfs*14 0.08 TCGA-EE-A181-06 7 101192500 101192500 C T COL26A1 Missense_Mutation p.S330F 0.10 deleterious(0.05) probably_damaging(0.973) TCGA-EE-A181-06 7 101840329 101840329 C T CUX1 Silent p.S557S 0.12 TCGA-EE-A181-06 7 101923374 101923374 G A CUX1 Missense_Mutation p.E574K 0.12 deleterious(0) possibly_damaging(0.818) TCGA-EE-A181-06 7 102106288 102106288 C T LRWD1 Silent p.S35S 0.14 TCGA-EE-A181-06 7 103029808 103029808 G A SLC26A5 Missense_Mutation p.P459S 0.10 tolerated(0.48) probably_damaging(0.999) TCGA-EE-A181-06 7 103033422 103033422 T C SLC26A5 Missense_Mutation p.I355V 0.08 tolerated(0.12) probably_damaging(0.986) TCGA-EE-A181-06 7 103126752 103126752 C T RELN Missense_Mutation p.G3292E 0.17 tolerated(0.1) possibly_damaging(0.616) TCGA-EE-A181-06 7 103236980 103236980 G A RELN Silent p.L1154L 0.13 TCGA-EE-A181-06 7 104715193 104715193 T C KMT2E Silent p.V220V 0.15 TCGA-EE-A181-06 7 104753447 104753447 A G KMT2E Silent p.P1748P 0.12 TCGA-EE-A181-06 7 105121519 105121519 G A PUS7 Silent p.V385V 0.16 TCGA-EE-A181-06 7 105187477 105187477 C T RINT1 Silent p.F212F 0.11 TCGA-EE-A181-06 7 106829856 106829856 G C HBP1 Missense_Mutation p.E295D 0.12 tolerated(0.1) probably_damaging(0.995) TCGA-EE-A181-06 7 107599799 107599799 G A LAMB1 Missense_Mutation p.P862L 0.09 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 7 107717394 107717394 C T LAMB4 Missense_Mutation p.D707N 0.07 deleterious(0) probably_damaging(0.965) TCGA-EE-A181-06 7 107746428 107746428 G A LAMB4 Missense_Mutation p.T235I 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 7 107790410 107790410 C T NRCAM Missense_Mutation p.G1287E 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 107818488 107818488 G A NRCAM Missense_Mutation p.P974L 0.13 tolerated(0.19) probably_damaging(0.997) TCGA-EE-A181-06 7 107872892 107872892 C T NRCAM Missense_Mutation p.G102E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 110763663 110763663 G A LRRN3 Missense_Mutation p.D279N 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 114282672 114282672 G A FOXP2 Missense_Mutation p.R353Q 0.11 deleterious(0.01) unknown(0) TCGA-EE-A181-06 7 114299459 114299459 C T FOXP2 Missense_Mutation p.P531L 0.08 deleterious(0) unknown(0) TCGA-EE-A181-06 7 11630095 11630095 T C THSD7A Missense_Mutation p.N482S 0.10 tolerated(0.66) benign(0.012) TCGA-EE-A181-06 7 116380042 116380042 G A MET Silent p.V477V 0.16 TCGA-EE-A181-06 7 11676392 11676392 C T THSD7A Nonsense_Mutation p.W129* 0.15 TCGA-EE-A181-06 7 116955182 116955182 C T WNT2 Silent p.R177R 0.15 TCGA-EE-A181-06 7 117175409 117175409 C T CFTR Silent p.F229F 0.17 TCGA-EE-A181-06 7 117175426 117175426 T G CFTR Missense_Mutation p.L235R 0.09 deleterious(0.03) possibly_damaging(0.559) TCGA-EE-A181-06 7 117175444 117175444 G A CFTR Missense_Mutation p.G241E 0.14 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A181-06 7 117368300 117368300 G A CTTNBP2 Missense_Mutation p.P1300S 0.09 tolerated(0.07) benign(0.011) TCGA-EE-A181-06 7 120373106 120373106 G A KCND2 Missense_Mutation p.R422Q 0.16 deleterious(0.03) possibly_damaging(0.621) TCGA-EE-A181-06 7 120446636 120446636 G A TSPAN12 Silent p.A193A 0.22 TCGA-EE-A181-06 7 121719731 121719731 G A AASS Silent p.P772P 0.18 TCGA-EE-A181-06 7 121942985 121942985 C T FEZF1 Missense_Mutation p.E313K 0.15 deleterious(0.03) benign(0.423) TCGA-EE-A181-06 7 122114438 122114438 G A CADPS2 Silent p.C665C 0.13 TCGA-EE-A181-06 7 122338481 122338481 G A RNF133 Silent p.F164F 0.09 TCGA-EE-A181-06 7 122342384 122342384 G A RNF148 Missense_Mutation p.P141S 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A181-06 7 122634905 122634905 C T TAS2R16 Missense_Mutation p.E262K 0.18 deleterious(0) probably_damaging(0.978) TCGA-EE-A181-06 7 122635744 122635744 C T TAS2R16 5'UTR 0.67 TCGA-EE-A181-06 7 122759254 122759254 G A SLC13A1 Silent p.L465L 0.12 TCGA-EE-A181-06 7 123270144 123270144 G A ASB15 Missense_Mutation p.R522K 0.13 tolerated(1) benign(0) TCGA-EE-A181-06 7 123302477 123302477 C T LMOD2 Silent p.F279F 0.12 TCGA-EE-A181-06 7 123509188 123509188 G A HYAL4 Silent p.R287R 0.12 TCGA-EE-A181-06 7 123517154 123517154 C T HYAL4 Missense_Mutation p.S464L 0.12 tolerated(0.12) benign(0.001) TCGA-EE-A181-06 7 123593922 123593922 C T SPAM1 Missense_Mutation p.P100S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 123599723 123599723 G A SPAM1 Silent p.E410E 0.23 TCGA-EE-A181-06 7 124404490 124404490 A - GPR37 Frame_Shift_Del p.Y181Tfs*65 0.14 TCGA-EE-A181-06 7 128119262 128119262 C T METTL2B Missense_Mutation p.H85Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 128488697 128488697 C T FLNC Missense_Mutation p.P1555S 0.09 tolerated(0.06) benign(0.027) TCGA-EE-A181-06 7 128614962 128614962 G A TNPO3 Missense_Mutation p.H745Y 0.08 tolerated(0.08) benign(0.298) TCGA-EE-A181-06 7 129079882 129079882 C T STRIP2 Missense_Mutation p.T50I 0.11 deleterious(0) benign(0.319) TCGA-EE-A181-06 7 129125672 129125672 T A STRIP2 3'UTR 0.18 TCGA-EE-A181-06 7 129658435 129658435 G A ZC3HC1 3'UTR 0.14 TCGA-EE-A181-06 7 131859575 131859575 G T PLXNA4 Missense_Mutation p.P1327T 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 131859576 131859576 G A PLXNA4 Silent p.F1326F 0.15 TCGA-EE-A181-06 7 131859612 131859612 G A PLXNA4 Silent p.F1314F 0.09 TCGA-EE-A181-06 7 132973809 132973809 T C EXOC4 Missense_Mutation p.V137A 0.15 deleterious(0.01) benign(0.083) TCGA-EE-A181-06 7 134222966 134222966 C T AKR1B10 Silent p.I254I 0.10 TCGA-EE-A181-06 7 134925451 134925451 G A STRA8 Missense_Mutation p.D81N 0.12 tolerated(0.1) benign(0.316) TCGA-EE-A181-06 7 135300744 135300744 C T NUP205 Missense_Mutation p.R1131C 0.70 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 7 137801365 137801365 G A AKR1D1 Splice_Site p.X313_splice 0.12 TCGA-EE-A181-06 7 138189106 138189106 A C TRIM24 Missense_Mutation p.K146Q 0.11 deleterious(0) possibly_damaging(0.889) TCGA-EE-A181-06 7 138437493 138437493 C T ATP6V0A4 Missense_Mutation p.M302I 0.09 tolerated(0.49) benign(0.042) TCGA-EE-A181-06 7 138453565 138453565 C T ATP6V0A4 Missense_Mutation p.S84N 0.09 tolerated(1) benign(0.005) TCGA-EE-A181-06 7 138603927 138603927 C T KIAA1549 Missense_Mutation p.E149K 0.10 deleterious(0) possibly_damaging(0.713) TCGA-EE-A181-06 7 138827047 138827047 A G TTC26 Missense_Mutation p.H132R 0.12 deleterious(0) possibly_damaging(0.735) TCGA-EE-A181-06 7 139727207 139727207 C T PARP12 Splice_Site p.X500_splice 0.15 TCGA-EE-A181-06 7 140481408 140481408 G A BRAF Missense_Mutation p.S467L 0.11 deleterious(0.01) possibly_damaging(0.756) TCGA-EE-A181-06 7 141443419 141443419 G A SSBP1 Silent p.V48V 0.11 TCGA-EE-A181-06 7 141536973 141536973 C T PRSS37 Missense_Mutation p.G169E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 141619132 141619132 T C OR9A4 Missense_Mutation p.F153L 0.07 tolerated(0.14) benign(0.077) TCGA-EE-A181-06 7 141619141 141619141 C T OR9A4 Nonsense_Mutation p.Q156* 0.15 TCGA-EE-A181-06 7 141635657 141635657 C T CLEC5A Missense_Mutation p.G101E 0.18 tolerated(1) benign(0.001) TCGA-EE-A181-06 7 141672621 141672621 G A TAS2R38 Missense_Mutation p.P290L 0.09 deleterious(0) probably_damaging(0.974) TCGA-EE-A181-06 7 141720782 141720782 G A MGAM Missense_Mutation p.A153T 0.11 tolerated(0.1) benign(0.045) TCGA-EE-A181-06 7 141720877 141720877 C T MGAM Silent p.H184H 0.52 TCGA-EE-A181-06 7 141752690 141752690 A T MGAM Missense_Mutation p.K1022M 0.14 tolerated(0.09) possibly_damaging(0.454) TCGA-EE-A181-06 7 141758086 141758086 C T MGAM Silent p.I1259I 0.12 TCGA-EE-A181-06 7 141776002 141776002 G A MGAM Intron 0.14 TCGA-EE-A181-06 7 141795456 141795456 C T MGAM Missense_Mutation p.T1621I 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 7 142099675 142099675 C T TRBV7-8 Missense_Mutation p.D43N 0.55 tolerated(0.07) benign(0.366) TCGA-EE-A181-06 7 142206786 142206786 G A TRBV10-2 Silent p.I23I 0.26 TCGA-EE-A181-06 7 142232039 142232039 G A TRBV10-1 5'UTR 0.12 TCGA-EE-A181-06 7 142251123 142251123 G A TRBV6-4 Silent p.L5L 0.17 TCGA-EE-A181-06 7 142326771 142326771 C T TRBV19 Silent p.I23I 0.19 TCGA-EE-A181-06 7 142423617 142423617 G A TRBV27 Silent p.R91R 0.19 TCGA-EE-A181-06 7 142448586 142448586 G A TRBV29-1 Silent p.L60L 0.25 TCGA-EE-A181-06 7 142482271 142482271 C T PRSS3P2 RNA 0.11 TCGA-EE-A181-06 7 142572253 142572253 C T TRPV6 Missense_Mutation p.M481I 0.10 deleterious(0) possibly_damaging(0.794) TCGA-EE-A181-06 7 142572683 142572683 G A TRPV6 Silent p.I420I 0.14 TCGA-EE-A181-06 7 142630494 142630494 G A TRPV5 Silent p.S21S 0.15 TCGA-EE-A181-06 7 142638303 142638303 C T KEL 3'UTR 0.17 TCGA-EE-A181-06 7 142650990 142650990 C T KEL Silent p.P326P 0.76 TCGA-EE-A181-06 7 142651377 142651377 G A KEL Missense_Mutation p.S273F 0.12 tolerated(0.44) benign(0.007) TCGA-EE-A181-06 7 142658153 142658153 G A KEL Missense_Mutation p.H88Y 0.12 tolerated(0.18) benign(0.002) TCGA-EE-A181-06 7 142723401 142723401 C T OR9A2 Silent p.L273L 0.10 TCGA-EE-A181-06 7 142749652 142749652 C A OR6V1 Missense_Mutation p.T72N 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 7 143140874 143140874 C T TAS2R60 Missense_Mutation p.S110F 0.10 tolerated(1) benign(0.001) TCGA-EE-A181-06 7 143141184 143141184 G A TAS2R60 Missense_Mutation p.M213I 0.60 tolerated(0.46) benign(0.123) TCGA-EE-A181-06 7 143633204 143633204 G A OR2F2 Silent p.R293R 0.15 TCGA-EE-A181-06 7 143701904 143701904 T A OR6B1 Missense_Mutation p.I272N 0.66 deleterious(0) probably_damaging(0.914) TCGA-EE-A181-06 7 143701967 143701967 G A OR6B1 Missense_Mutation p.R293Q 0.15 tolerated(0.65) benign(0.004) TCGA-EE-A181-06 7 143793046 143793046 G A OR2A12 Silent p.P282P 0.09 TCGA-EE-A181-06 7 143807311 143807311 G A OR2A2 Silent p.L212L 0.60 TCGA-EE-A181-06 7 144099029 144099029 G A NOBOX Silent p.P75P 0.57 TCGA-EE-A181-06 7 14613939 14613939 G A DGKB Silent p.I557I 0.14 TCGA-EE-A181-06 7 146536841 146536841 C T CNTNAP2 Nonsense_Mutation p.Q83* 0.21 TCGA-EE-A181-06 7 147183040 147183040 C T CNTNAP2 Missense_Mutation p.H562Y 0.14 tolerated(1) benign(0.01) TCGA-EE-A181-06 7 148080974 148080974 G A CNTNAP2 Missense_Mutation p.D1237N 0.69 tolerated(0.43) benign(0.006) TCGA-EE-A181-06 7 148112653 148112653 A G CNTNAP2 Missense_Mutation p.N1314S 0.11 tolerated(0.64) benign(0.007) TCGA-EE-A181-06 7 148800740 148800740 A G ZNF425 Silent p.I741I 0.10 TCGA-EE-A181-06 7 149152685 149152685 G A ZNF777 Silent p.S143S 0.09 TCGA-EE-A181-06 7 149153091 149153091 G A ZNF777 Missense_Mutation p.P8L 0.11 deleterious_low_confidence(0) benign(0.44) TCGA-EE-A181-06 7 149318378 149318378 G A ZNF767 RNA 0.15 TCGA-EE-A181-06 7 149523216 149523216 G A SSPO RNA 0.24 TCGA-EE-A181-06 7 150034284 150034284 C T LRRC61 Missense_Mutation p.P112S 0.20 deleterious(0.05) benign(0.427) TCGA-EE-A181-06 7 150037263 150037263 C T RARRES2 Missense_Mutation p.E69K 0.13 tolerated(0.11) possibly_damaging(0.603) TCGA-EE-A181-06 7 150324794 150324794 G A GIMAP6 3'UTR 0.11 TCGA-EE-A181-06 7 150325013 150325013 C T GIMAP6 Missense_Mutation p.E225K 0.09 tolerated(0.19) possibly_damaging(0.841) TCGA-EE-A181-06 7 150325450 150325450 G A GIMAP6 Missense_Mutation p.S79F 0.12 tolerated(1) benign(0.001) TCGA-EE-A181-06 7 150327167 150327167 G A GIMAP6 Missense_Mutation p.P22S 0.15 tolerated(0.17) benign(0.005) TCGA-EE-A181-06 7 150389490 150389490 G A GIMAP2 Missense_Mutation p.G39E 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A181-06 7 150416146 150416146 G A GIMAP1 Missense_Mutation p.R4K 0.10 tolerated(0.17) benign(0.271) TCGA-EE-A181-06 7 150417206 150417206 C G GIMAP1 Silent p.A38A 0.16 TCGA-EE-A181-06 7 150417905 150417905 C T GIMAP1 Silent p.P271P 1.00 TCGA-EE-A181-06 7 150439344 150439344 G A GIMAP5 Silent p.G39G 0.14 TCGA-EE-A181-06 7 150439358 150439358 G A GIMAP5 Missense_Mutation p.G44E 0.63 deleterious(0) probably_damaging(0.986) TCGA-EE-A181-06 7 150555081 150555081 A G AOC1 Missense_Mutation p.N508S 0.16 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A181-06 7 150773192 150773192 C T SLC4A2 Silent p.A1188A 0.14 TCGA-EE-A181-06 7 151046258 151046258 G A NUB1 Missense_Mutation p.G97R 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A181-06 7 151046259 151046259 G A NUB1 Missense_Mutation p.G97E 0.10 tolerated(0.09) possibly_damaging(0.833) TCGA-EE-A181-06 7 151664293 151664293 G A GALNTL5 Intron 0.67 TCGA-EE-A181-06 7 151845611 151845611 C T KMT2C Silent p.K4467K 0.13 TCGA-EE-A181-06 7 152511666 152511666 G A ACTR3B Missense_Mutation p.R123K 0.11 deleterious(0.02) probably_damaging(0.92) TCGA-EE-A181-06 7 155094039 155094039 C T INSIG1 Missense_Mutation p.R206C 0.11 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 7 15652188 15652188 C T MEOX2 Missense_Mutation p.G247S 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A181-06 7 156963047 156963047 C T UBE3C Missense_Mutation p.S82F 0.11 deleterious(0.02) benign(0.089) TCGA-EE-A181-06 7 156963048 156963048 C T UBE3C Silent p.S82S 0.11 TCGA-EE-A181-06 7 156974994 156974994 C T UBE3C Silent p.F321F 0.12 TCGA-EE-A181-06 7 157387990 157387990 C T PTPRN2 Silent p.R812R 0.19 TCGA-EE-A181-06 7 158723148 158723148 C T WDR60 Silent p.L830L 0.13 TCGA-EE-A181-06 7 16255735 16255735 C T ISPD Missense_Mutation p.E403K 0.12 tolerated(1) benign(0) TCGA-EE-A181-06 7 16255819 16255819 G A ISPD Missense_Mutation p.H375Y 0.14 tolerated(0.15) benign(0.008) TCGA-EE-A181-06 7 16817517 16817517 C T TSPAN13 Missense_Mutation p.P136L 0.58 tolerated(0.38) benign(0.002) TCGA-EE-A181-06 7 17833923 17833923 G A SNX13 Intron 0.18 TCGA-EE-A181-06 7 17915119 17915119 G A SNX13 Silent p.S216S 0.13 TCGA-EE-A181-06 7 18067222 18067222 C T PRPS1L1 Missense_Mutation p.E62K 0.11 tolerated(0.3) benign(0.033) TCGA-EE-A181-06 7 18624924 18624924 C T HDAC9 Missense_Mutation p.P15S 0.57 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-EE-A181-06 7 18688140 18688140 C T HDAC9 Missense_Mutation p.S434L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 195687 195687 G A FAM20C Missense_Mutation p.E247K 0.12 tolerated(0.28) benign(0.02) TCGA-EE-A181-06 7 19761660 19761660 G A TMEM196 3'UTR 0.23 TCGA-EE-A181-06 7 20198551 20198551 C T MACC1 Missense_Mutation p.R478K 0.18 tolerated(0.9) benign(0.004) TCGA-EE-A181-06 7 20198624 20198624 C T MACC1 Missense_Mutation p.E454K 0.13 tolerated(0.8) benign(0.219) TCGA-EE-A181-06 7 20406638 20406638 T C ITGB8 Missense_Mutation p.F73L 0.58 deleterious(0) probably_damaging(0.984) TCGA-EE-A181-06 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.13 tolerated(0.11) benign(0.16) TCGA-EE-A181-06 7 20739693 20739693 G T ABCB5 Missense_Mutation p.G758C 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A181-06 7 21640507 21640507 A G DNAH11 Missense_Mutation p.I1072V 0.18 benign(0.002) TCGA-EE-A181-06 7 21654753 21654753 T C DNAH11 Silent p.L1292L 0.09 TCGA-EE-A181-06 7 21742383 21742383 C T DNAH11 Missense_Mutation p.S2086F 0.13 probably_damaging(0.952) TCGA-EE-A181-06 7 21857904 21857904 G A DNAH11 Silent p.T3553T 0.13 TCGA-EE-A181-06 7 21857953 21857953 G A DNAH11 Missense_Mutation p.G3570R 0.11 probably_damaging(0.965) TCGA-EE-A181-06 7 21857954 21857954 G A DNAH11 Missense_Mutation p.G3570E 0.12 possibly_damaging(0.465) TCGA-EE-A181-06 7 21892114 21892114 T G DNAH11 Missense_Mutation p.F3649L 0.11 benign(0.201) TCGA-EE-A181-06 7 23300152 23300152 C T GPNMB Missense_Mutation p.P260S 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A181-06 7 23871972 23871972 A G STK31 Missense_Mutation p.N1016S 0.13 tolerated_low_confidence(0.3) benign(0.007) TCGA-EE-A181-06 7 24689321 24689321 C T MPP6 Nonsense_Mutation p.Q121* 0.12 TCGA-EE-A181-06 7 25176355 25176355 G A C7orf31 Nonsense_Mutation p.R337* 0.12 TCGA-EE-A181-06 7 25176356 25176356 G A C7orf31 Silent p.A336A 0.11 TCGA-EE-A181-06 7 25266433 25266433 C T NPVF Silent p.E117E 0.14 TCGA-EE-A181-06 7 27148090 27148090 G A HOXA3 Missense_Mutation p.S259L 0.14 tolerated(0.06) benign(0.067) TCGA-EE-A181-06 7 27148297 27148297 G A HOXA3 Missense_Mutation p.S190L 0.19 deleterious(0.01) benign(0.32) TCGA-EE-A181-06 7 27186993 27186993 C T HOXA6 Missense_Mutation p.E126K 0.17 tolerated(0.12) possibly_damaging(0.905) TCGA-EE-A181-06 7 2834666 2834666 G A GNA12 Missense_Mutation p.P141S 0.15 tolerated(0.72) benign(0.002) TCGA-EE-A181-06 7 28534529 28534529 C T CREB5 Silent p.F27F 0.16 TCGA-EE-A181-06 7 28763871 28763871 C T CREB5 Silent p.I208I 0.13 TCGA-EE-A181-06 7 29976306 29976306 G A SCRN1 Silent p.T277T 0.12 TCGA-EE-A181-06 7 29976307 29976307 G A SCRN1 Missense_Mutation p.T277I 0.12 tolerated(1) benign(0.001) TCGA-EE-A181-06 7 30830930 30830930 C T FAM188B Silent p.S271S 0.10 TCGA-EE-A181-06 7 31855584 31855584 C T PDE1C Silent p.G649G 0.10 TCGA-EE-A181-06 7 32909888 32909888 G A KBTBD2 Missense_Mutation p.P314L 0.15 deleterious(0) probably_damaging(0.983) TCGA-EE-A181-06 7 32909889 32909889 G A KBTBD2 Missense_Mutation p.P314S 0.13 tolerated(0.1) probably_damaging(0.974) TCGA-EE-A181-06 7 33397504 33397504 C T BBS9 Silent p.P530P 0.13 TCGA-EE-A181-06 7 34698142 34698142 G A NPSR1 Missense_Mutation p.E40K 0.12 deleterious(0.03) benign(0.167) TCGA-EE-A181-06 7 34851456 34851456 C T NPSR1 Silent p.P153P 0.20 TCGA-EE-A181-06 7 34867176 34867176 G A NPSR1 Silent p.V214V 0.11 TCGA-EE-A181-06 7 35050162 35050162 G A DPY19L1 Missense_Mutation p.P155S 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 7 35144271 35144271 C T DPY19L2P1 RNA 0.11 TCGA-EE-A181-06 7 35707140 35707140 G A HERPUD2 Missense_Mutation p.A133V 0.15 tolerated(0.16) benign(0.021) TCGA-EE-A181-06 7 35923579 35923579 C T SEPT7 Missense_Mutation p.P269S 0.18 deleterious(0.02) possibly_damaging(0.496) TCGA-EE-A181-06 7 37283994 37283994 C T ELMO1 Missense_Mutation p.R139Q 0.12 tolerated(0.24) benign(0.093) TCGA-EE-A181-06 7 37901712 37901712 G A NME8 Missense_Mutation p.R118K 0.20 tolerated(0.73) benign(0.036) TCGA-EE-A181-06 7 38402702 38402702 G A TRGV2 Silent p.I39I 0.60 TCGA-EE-A181-06 7 38433715 38433715 G A AMPH Missense_Mutation p.P500S 0.15 tolerated(0.07) benign(0.019) TCGA-EE-A181-06 7 38574563 38574563 C T AMPH Missense_Mutation p.E40K 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 38791813 38791813 G A VPS41 Missense_Mutation p.P630L 0.11 deleterious(0) possibly_damaging(0.869) TCGA-EE-A181-06 7 39504282 39504282 C T POU6F2 Silent p.S691S 0.26 TCGA-EE-A181-06 7 40037154 40037154 C T CDK13 Missense_Mutation p.L645F 0.12 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 7 4007031 4007031 C T SDK1 Missense_Mutation p.S504F 0.14 deleterious(0) possibly_damaging(0.866) TCGA-EE-A181-06 7 4050601 4050601 C T SDK1 Missense_Mutation p.S712F 0.16 deleterious(0) benign(0.209) TCGA-EE-A181-06 7 41729597 41729597 C T INHBA Missense_Mutation p.G311D 0.09 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 7 41730140 41730140 C T INHBA Missense_Mutation p.G130E 0.18 deleterious(0) possibly_damaging(0.502) TCGA-EE-A181-06 7 43906466 43906466 G A MRPS24 Silent p.R112R 0.16 TCGA-EE-A181-06 7 43918118 43918118 G A URGCP Missense_Mutation p.S315F 0.11 deleterious(0) probably_damaging(0.918) TCGA-EE-A181-06 7 44553041 44553041 C T NPC1L1 3'UTR 0.15 TCGA-EE-A181-06 7 44713424 44713424 C T OGDH Silent p.F224F 0.13 TCGA-EE-A181-06 7 44805143 44805143 C T ZMIZ2 Missense_Mutation p.P736L 0.73 tolerated(0.07) benign(0.005) TCGA-EE-A181-06 7 45699648 45699648 C T ADCY1 Missense_Mutation p.H439Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-EE-A181-06 7 45744205 45744205 C T ADCY1 Missense_Mutation p.S936L 0.17 tolerated(0.61) benign(0.042) TCGA-EE-A181-06 7 45932710 45932710 C T IGFBP1 3'UTR 0.12 TCGA-EE-A181-06 7 4780549 4780549 C T FOXK1 Missense_Mutation p.P214L 0.18 deleterious(0.02) possibly_damaging(0.691) TCGA-EE-A181-06 7 47879118 47879118 G A PKD1L1 Silent p.L1899L 0.17 TCGA-EE-A181-06 7 47925613 47925613 C T PKD1L1 Missense_Mutation p.G959E 0.12 tolerated(0.07) possibly_damaging(0.678) TCGA-EE-A181-06 7 47947802 47947802 C T PKD1L1 Missense_Mutation p.G425E 0.15 deleterious(0.03) benign(0.388) TCGA-EE-A181-06 7 47969010 47969010 C T PKD1L1 Missense_Mutation p.R284Q 0.24 tolerated(0.69) benign(0.001) TCGA-EE-A181-06 7 48427452 48427452 C T ABCA13 Missense_Mutation p.P3790L 0.12 probably_damaging(0.997) TCGA-EE-A181-06 7 49977183 49977183 C T ZPBP Missense_Mutation p.G333R 0.14 tolerated(0.09) probably_damaging(0.993) TCGA-EE-A181-06 7 50444346 50444346 G A IKZF1 Missense_Mutation p.M92I 0.20 tolerated(0.46) benign(0.005) TCGA-EE-A181-06 7 50459490 50459490 G A IKZF1 Missense_Mutation p.R218K 0.13 tolerated(0.25) possibly_damaging(0.797) TCGA-EE-A181-06 7 50513288 50513288 G A FIGNL1 Silent p.P566P 0.20 TCGA-EE-A181-06 7 50514458 50514458 G A FIGNL1 Silent p.F176F 0.16 TCGA-EE-A181-06 7 51111157 51111157 G A COBL Silent p.D443D 0.19 TCGA-EE-A181-06 7 54617524 54617524 C T VSTM2A Intron 0.45 TCGA-EE-A181-06 7 55236268 55236268 C T EGFR Intron 0.12 TCGA-EE-A181-06 7 5540754 5540754 G A FBXL18 Silent p.C382C 0.12 TCGA-EE-A181-06 7 5920543 5920543 G A OCM Missense_Mutation p.S8N 0.16 tolerated(0.29) benign(0.182) TCGA-EE-A181-06 7 6013126 6013126 G A PMS2 Silent p.I831I 0.31 TCGA-EE-A181-06 7 6063007 6063007 C A AIMP2 Missense_Mutation p.F216L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A181-06 7 6370348 6370348 G A FAM220A Silent p.P146P 0.68 TCGA-EE-A181-06 7 64166713 64166713 C T ZNF107 Missense_Mutation p.H11Y 0.09 tolerated(0.26) benign(0.042) TCGA-EE-A181-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.14 deleterious(0) possibly_damaging(0.869) TCGA-EE-A181-06 7 64291840 64291840 C T ZNF138 Missense_Mutation p.R48C 0.14 deleterious(0.01) benign(0.045) TCGA-EE-A181-06 7 64388601 64388601 T C ZNF273 Missense_Mutation p.F299L 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A181-06 7 64453074 64453074 G A ERV3-1 Missense_Mutation p.P111S 0.23 tolerated(0.94) benign(0.061) TCGA-EE-A181-06 7 65705367 65705367 C T TPST1 5'UTR 0.63 TCGA-EE-A181-06 7 66456124 66456124 G A SBDS Silent p.I208I 0.10 TCGA-EE-A181-06 7 66489954 66489954 C T TYW1 Missense_Mutation p.S310F 0.08 deleterious(0.01) benign(0.021) TCGA-EE-A181-06 7 66489955 66489955 C T TYW1 Silent p.S310S 0.09 TCGA-EE-A181-06 7 69364339 69364339 G A AUTS2 Missense_Mutation p.R126Q 0.12 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A181-06 7 70255391 70255391 C T AUTS2 Silent p.Y1063Y 0.76 TCGA-EE-A181-06 7 70886063 70886063 G A WBSCR17 Missense_Mutation p.D312N 0.25 tolerated(0.12) possibly_damaging(0.808) TCGA-EE-A181-06 7 71130578 71130578 G A WBSCR17 Silent p.L421L 0.74 TCGA-EE-A181-06 7 71275406 71275406 C T CALN1 Silent p.T191T 0.10 TCGA-EE-A181-06 7 72409160 72409160 C T POM121 Missense_Mutation p.P171L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 72663984 72663984 C T GTF2IRD2P1 RNA 0.20 TCGA-EE-A181-06 7 72717711 72717711 G A NSUN5 Missense_Mutation p.P391L 0.29 deleterious(0.01) probably_damaging(0.92) TCGA-EE-A181-06 7 7283248 7283248 C T C1GALT1 Missense_Mutation p.P328S 0.15 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A181-06 7 7283249 7283249 C T C1GALT1 Missense_Mutation p.P328L 0.15 deleterious(0) benign(0.15) TCGA-EE-A181-06 7 72907212 72907212 G A BAZ1B Missense_Mutation p.S204L 0.13 deleterious_low_confidence(0.01) benign(0.256) TCGA-EE-A181-06 7 73013920 73013920 A T MLXIPL Missense_Mutation p.L336Q 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A181-06 7 73520478 73520478 G A LIMK1 Silent p.L262L 0.63 TCGA-EE-A181-06 7 73790984 73790984 C T CLIP2 Silent p.F751F 0.09 TCGA-EE-A181-06 7 74237242 74237242 C T GTF2IRD2 Missense_Mutation p.G151D 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A181-06 7 7493093 7493093 C T COL28A1 Missense_Mutation p.G473E 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 75573226 75573226 G T POR Intron 0.10 TCGA-EE-A181-06 7 7557443 7557443 C T COL28A1 Missense_Mutation p.G280E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 75634642 75634642 G A STYXL1 Silent p.D178D 0.12 TCGA-EE-A181-06 7 77824279 77824279 G A MAGI2 Silent p.S727S 0.10 TCGA-EE-A181-06 7 77885265 77885265 C T MAGI2 Missense_Mutation p.R681Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 7 77885828 77885828 G A MAGI2 Silent p.F493F 0.11 TCGA-EE-A181-06 7 80117911 80117911 G A GNAT3 Silent p.I81I 0.29 TCGA-EE-A181-06 7 80301345 80301345 G A CD36 Missense_Mutation p.D372N 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 7 8125931 8125931 C T GLCCI1 Silent p.L469L 0.15 TCGA-EE-A181-06 7 81386535 81386535 G A HGF Missense_Mutation p.P151L 0.14 tolerated(0.24) possibly_damaging(0.741) TCGA-EE-A181-06 7 82451711 82451711 G A PCLO Intron 0.13 TCGA-EE-A181-06 7 82544691 82544691 G A PCLO Missense_Mutation p.S4204L 0.18 unknown(0) TCGA-EE-A181-06 7 82580168 82580168 G A PCLO Nonsense_Mutation p.R3246* 0.68 TCGA-EE-A181-06 7 82582185 82582185 G A PCLO Missense_Mutation p.S2695F 0.10 unknown(0) TCGA-EE-A181-06 7 82582551 82582551 G A PCLO Missense_Mutation p.S2573F 0.64 unknown(0) TCGA-EE-A181-06 7 82583700 82583700 G A PCLO Missense_Mutation p.S2190L 0.14 unknown(0) TCGA-EE-A181-06 7 82583913 82583913 G A PCLO Missense_Mutation p.S2119L 0.16 unknown(0) TCGA-EE-A181-06 7 82584293 82584293 C T PCLO Silent p.K1992K 0.11 TCGA-EE-A181-06 7 82585021 82585021 C T PCLO Missense_Mutation p.G1750R 0.10 unknown(0) TCGA-EE-A181-06 7 82585284 82585284 C T PCLO Missense_Mutation p.G1662E 0.56 unknown(0) TCGA-EE-A181-06 7 82585683 82585683 C T PCLO Missense_Mutation p.R1529Q 0.12 unknown(0) TCGA-EE-A181-06 7 82785047 82785047 G A PCLO Missense_Mutation p.P304S 0.15 unknown(0) TCGA-EE-A181-06 7 82785193 82785193 C T PCLO Missense_Mutation p.G255E 0.12 unknown(0) TCGA-EE-A181-06 7 83029428 83029428 C T SEMA3E Missense_Mutation p.D428N 0.11 tolerated(0.98) possibly_damaging(0.653) TCGA-EE-A181-06 7 83029548 83029548 C T SEMA3E Missense_Mutation p.G388R 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 7 83032082 83032082 G A SEMA3E Nonsense_Mutation p.R337* 0.16 TCGA-EE-A181-06 7 86394792 86394792 G A GRM3 Missense_Mutation p.E111K 0.13 tolerated(0.13) probably_damaging(0.935) TCGA-EE-A181-06 7 86468214 86468214 G A GRM3 Missense_Mutation p.G462R 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A181-06 7 86509846 86509846 C T KIAA1324L Missense_Mutation p.E1011K 0.13 tolerated(0.24) benign(0.015) TCGA-EE-A181-06 7 87183229 87183229 C T ABCB1 Missense_Mutation p.E283K 0.15 tolerated(0.22) benign(0.012) TCGA-EE-A181-06 7 87370852 87370852 C T RUNDC3B Missense_Mutation p.P213S 0.12 deleterious(0.03) benign(0.298) TCGA-EE-A181-06 7 87476285 87476285 G A SLC25A40 Missense_Mutation p.L204F 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A181-06 7 88423674 88423674 C T C7orf62 Missense_Mutation p.G195R 0.12 tolerated(0.1) probably_damaging(0.991) TCGA-EE-A181-06 7 91651636 91651636 C T AKAP9 Missense_Mutation p.H1308Y 0.14 benign(0.001) TCGA-EE-A181-06 7 91674501 91674501 C T AKAP9 Missense_Mutation p.S1781L 0.17 benign(0.407) TCGA-EE-A181-06 7 91695830 91695830 C T AKAP9 Silent p.F2100F 0.11 TCGA-EE-A181-06 7 92129126 92129126 G A PEX1 Silent p.P870P 0.16 TCGA-EE-A181-06 7 92734725 92734725 G A SAMD9 Missense_Mutation p.S229L 0.17 deleterious(0) possibly_damaging(0.904) TCGA-EE-A181-06 7 92760958 92760958 G A SAMD9L Nonsense_Mutation p.Q1443* 0.08 TCGA-EE-A181-06 7 92764573 92764573 G A SAMD9L Missense_Mutation p.H238Y 0.11 deleterious(0.01) possibly_damaging(0.767) TCGA-EE-A181-06 7 92826821 92826821 C T HEPACAM2 Nonsense_Mutation p.W372* 0.08 TCGA-EE-A181-06 7 92978030 92978030 T C CCDC132 Silent p.L739L 0.15 TCGA-EE-A181-06 7 93065372 93065372 G A CALCR Silent p.I381I 0.12 TCGA-EE-A181-06 7 93072988 93072988 G A CALCR Missense_Mutation p.L278F 0.68 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A181-06 7 94293378 94293378 G A PEG10 Silent p.K170K 0.11 TCGA-EE-A181-06 7 95157196 95157196 C T ASB4 Missense_Mutation p.L187F 0.10 deleterious(0) possibly_damaging(0.877) TCGA-EE-A181-06 7 97361934 97361934 C T TAC1 Missense_Mutation p.L4F 0.09 deleterious(0.01) benign(0.059) TCGA-EE-A181-06 7 97821025 97821025 G A LMTK2 Silent p.R416R 0.14 TCGA-EE-A181-06 7 97863002 97863002 C T TECPR1 Missense_Mutation p.R468K 0.12 tolerated(0.89) benign(0.001) TCGA-EE-A181-06 7 98452871 98452871 G A TMEM130 Silent p.F265F 0.11 TCGA-EE-A181-06 7 98547192 98547192 C T TRRAP Silent p.F1640F 0.66 TCGA-EE-A181-06 7 98591302 98591302 C T TRRAP Missense_Mutation p.S3316F 0.17 probably_damaging(0.943) TCGA-EE-A181-06 7 99022794 99022794 G A ATP5J2-PTCD1 Missense_Mutation p.S503F 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 7 99169928 99169928 T G ZNF655 Missense_Mutation p.V101G 0.15 tolerated(0.42) possibly_damaging(0.504) TCGA-EE-A181-06 7 99328737 99328737 C T CYP3A7 Missense_Mutation p.G37E 0.18 deleterious(0) benign(0.28) TCGA-EE-A181-06 7 99654713 99654713 C T ZSCAN21 Silent p.V28V 0.61 TCGA-EE-A181-06 7 99654869 99654869 C T ZSCAN21 Silent p.T80T 0.62 TCGA-EE-A181-06 7 99798290 99798290 T A GATS 3'UTR 0.55 TCGA-EE-A181-06 7 99955936 99955936 C T PILRB Missense_Mutation p.P4L 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A181-06 8 100844830 100844830 G A VPS13B Silent p.Q3213Q 0.11 TCGA-EE-A181-06 8 101721719 101721719 G A PABPC1 Missense_Mutation p.P405S 0.13 tolerated(0.24) benign(0.018) TCGA-EE-A181-06 8 10285727 10285727 G A MSRA Missense_Mutation p.E205K 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 104240216 104240216 G A BAALC Splice_Site p.X110_splice 0.18 TCGA-EE-A181-06 8 104778598 104778598 G A RIMS2 Silent p.Q177Q 0.18 TCGA-EE-A181-06 8 105261011 105261011 G A RIMS2 Missense_Mutation p.G1187R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A181-06 8 105263946 105263946 C T RIMS2 Silent p.F1316F 0.46 TCGA-EE-A181-06 8 10755866 10755866 G A XKR6 Missense_Mutation p.L508F 0.11 tolerated(0.72) benign(0.004) TCGA-EE-A181-06 8 107782336 107782336 C T ABRA Missense_Mutation p.S28N 0.18 tolerated(0.45) benign(0.001) TCGA-EE-A181-06 8 109797168 109797168 C T TMEM74 Missense_Mutation p.E54K 0.12 tolerated(0.91) benign(0.002) TCGA-EE-A181-06 8 110397839 110397839 G A PKHD1L1 Silent p.G183G 0.09 TCGA-EE-A181-06 8 110460499 110460499 C T PKHD1L1 Silent p.I1968I 0.22 TCGA-EE-A181-06 8 110587583 110587583 G A SYBU Missense_Mutation p.P515L 0.21 tolerated(0.12) benign(0.009) TCGA-EE-A181-06 8 110655195 110655195 G A SYBU Intron 0.15 TCGA-EE-A181-06 8 113267574 113267574 G A CSMD3 Silent p.F3315F 0.48 TCGA-EE-A181-06 8 113276005 113276005 C T CSMD3 Missense_Mutation p.G3242E 0.14 deleterious(0) probably_damaging(0.969) TCGA-EE-A181-06 8 113323251 113323251 G A CSMD3 Missense_Mutation p.S2614F 0.12 deleterious(0) possibly_damaging(0.776) TCGA-EE-A181-06 8 113326282 113326282 C T CSMD3 Splice_Site p.X2517_splice 0.09 TCGA-EE-A181-06 8 113326806 113326806 T G CSMD3 Silent p.G2467G 0.14 TCGA-EE-A181-06 8 113392671 113392671 G A CSMD3 Missense_Mutation p.H2016Y 0.13 tolerated(0.06) benign(0.154) TCGA-EE-A181-06 8 11612578 11612578 G A GATA4 Silent p.R311R 0.12 TCGA-EE-A181-06 8 11612605 11612605 G A GATA4 Silent p.R320R 0.21 TCGA-EE-A181-06 8 116599237 116599237 G A TRPS1 Silent p.S897S 0.18 TCGA-EE-A181-06 8 118184870 118184870 C T SLC30A8 Missense_Mutation p.P354S 0.13 tolerated(0.22) benign(0.011) TCGA-EE-A181-06 8 119593061 119593061 C T SAMD12 Missense_Mutation p.E29K 0.30 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A181-06 8 11970654 11970654 C T ZNF705D Missense_Mutation p.S297F 0.15 deleterious(0.03) benign(0.003) TCGA-EE-A181-06 8 119936639 119936639 G A TNFRSF11B Nonsense_Mutation p.Q394* 0.13 TCGA-EE-A181-06 8 11995102 11995102 C T USP17L2 Missense_Mutation p.E390K 0.27 tolerated(0.59) benign(0.038) TCGA-EE-A181-06 8 120435357 120435357 C T NOV Silent p.T353T 0.26 TCGA-EE-A181-06 8 121209146 121209146 G A COL14A1 Missense_Mutation p.V185I 0.15 tolerated(0.27) probably_damaging(0.998) TCGA-EE-A181-06 8 121215985 121215985 C T COL14A1 Silent p.I305I 0.12 TCGA-EE-A181-06 8 121220506 121220506 G A COL14A1 Silent p.L409L 0.31 TCGA-EE-A181-06 8 121237404 121237404 C T COL14A1 Silent p.S605S 0.09 TCGA-EE-A181-06 8 121295969 121295969 G A COL14A1 Missense_Mutation p.E1307K 0.45 deleterious(0) probably_damaging(0.963) TCGA-EE-A181-06 8 121295983 121295983 A T COL14A1 Missense_Mutation p.K1311N 0.12 deleterious(0.04) possibly_damaging(0.65) TCGA-EE-A181-06 8 121528235 121528235 C T MTBP Missense_Mutation p.R684C 0.17 deleterious(0) probably_damaging(0.968) TCGA-EE-A181-06 8 121530281 121530281 A T MTBP Missense_Mutation p.M813L 0.16 tolerated(0.23) benign(0) TCGA-EE-A181-06 8 121644714 121644714 C T SNTB1 Silent p.E322E 0.11 TCGA-EE-A181-06 8 124384032 124384032 G A ATAD2 Silent p.I138I 0.13 TCGA-EE-A181-06 8 124968292 124968292 C T FER1L6 Silent p.I18I 0.20 TCGA-EE-A181-06 8 124992888 124992888 C T FER1L6 Missense_Mutation p.S416F 0.10 deleterious(0) probably_damaging(0.942) TCGA-EE-A181-06 8 124992978 124992978 G A FER1L6 Missense_Mutation p.G446E 0.18 tolerated(0.11) benign(0.424) TCGA-EE-A181-06 8 124998379 124998379 G A FER1L6 Silent p.K494K 0.13 TCGA-EE-A181-06 8 125551344 125551344 C T TATDN1 5'Flank 0.30 TCGA-EE-A181-06 8 125575043 125575043 G A MTSS1 Missense_Mutation p.P339S 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A181-06 8 125989788 125989788 C T ZNF572 Silent p.T426T 0.23 TCGA-EE-A181-06 8 12879296 12879296 C T KIAA1456 Missense_Mutation p.P370S 0.65 tolerated(0.26) benign(0.012) TCGA-EE-A181-06 8 130789707 130789707 T A GSDMC Nonsense_Mutation p.K43* 0.15 TCGA-EE-A181-06 8 131104305 131104305 G A ASAP1 Missense_Mutation p.P829L 0.14 tolerated(0.12) probably_damaging(0.981) TCGA-EE-A181-06 8 131792904 131792904 C T ADCY8 Missense_Mutation p.G1163E 0.16 deleterious(0) benign(0.02) TCGA-EE-A181-06 8 131826339 131826339 G A ADCY8 Silent p.F963F 0.24 TCGA-EE-A181-06 8 132002651 132002651 C T ADCY8 Silent p.E366E 0.10 TCGA-EE-A181-06 8 132968031 132968031 T C EFR3A Missense_Mutation p.S219P 0.15 tolerated(0.15) benign(0.001) TCGA-EE-A181-06 8 133182620 133182620 C T KCNQ3 Nonsense_Mutation p.W399* 0.33 TCGA-EE-A181-06 8 133894855 133894855 G A TG Missense_Mutation p.R296Q 0.13 deleterious(0.02) possibly_damaging(0.782) TCGA-EE-A181-06 8 133900382 133900382 C T TG Missense_Mutation p.P777L 0.31 deleterious(0.02) benign(0.172) TCGA-EE-A181-06 8 134477115 134477115 C T ST3GAL1 Missense_Mutation p.E197K 0.14 benign(0.317) TCGA-EE-A181-06 8 134477116 134477116 C T ST3GAL1 Silent p.R196R 0.14 TCGA-EE-A181-06 8 135602517 135602517 G A ZFAT Missense_Mutation p.H853Y 0.15 deleterious(0) possibly_damaging(0.793) TCGA-EE-A181-06 8 139158294 139158294 C T FAM135B Splice_Site p.X1150_splice 0.17 TCGA-EE-A181-06 8 13948047 13948047 C T SGCZ Missense_Mutation p.E282K 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 8 139856336 139856336 C T COL22A1 Missense_Mutation p.E242K 0.20 unknown(0) TCGA-EE-A181-06 8 14095147 14095147 C T SGCZ Silent p.V126V 0.42 TCGA-EE-A181-06 8 141566090 141566090 G A AGO2 Missense_Mutation p.P392S 0.09 deleterious(0.05) benign(0.021) TCGA-EE-A181-06 8 141669535 141669535 A C PTK2 3'UTR 0.23 TCGA-EE-A181-06 8 141669536 141669536 G A PTK2 3'UTR 0.23 TCGA-EE-A181-06 8 142367832 142367832 G A GPR20 Silent p.F64F 0.17 TCGA-EE-A181-06 8 143694850 143694850 C T ARC Silent p.V261V 0.38 TCGA-EE-A181-06 8 143833821 143833821 C T LYPD2 Missense_Mutation p.G17R 0.18 tolerated(0.46) benign(0.008) TCGA-EE-A181-06 8 143857361 143857361 G A LYNX1 Silent p.L5L 0.09 TCGA-EE-A181-06 8 143958228 143958228 G A CYP11B1 Silent p.F223F 0.23 TCGA-EE-A181-06 8 144391662 144391662 C T TOP1MT Silent p.R585R 0.17 TCGA-EE-A181-06 8 144550396 144550396 G A ZC3H3 Missense_Mutation p.H720Y 0.14 deleterious(0.03) possibly_damaging(0.642) TCGA-EE-A181-06 8 144801552 144801552 C T MAPK15 Silent p.I207I 0.11 TCGA-EE-A181-06 8 144946006 144946006 G T EPPK1 Silent p.P472P 0.17 TCGA-EE-A181-06 8 144993558 144993558 G A PLEC Silent p.P3614P 0.29 TCGA-EE-A181-06 8 145725921 145725921 G A PPP1R16A Missense_Mutation p.E253K 0.38 deleterious(0.03) possibly_damaging(0.72) TCGA-EE-A181-06 8 145731462 145731462 G A GPT Missense_Mutation p.G302R 0.41 tolerated(0.15) benign(0.067) TCGA-EE-A181-06 8 15998534 15998534 G A MSR1 Intron 0.19 TCGA-EE-A181-06 8 17511000 17511000 C T MTUS1 Silent p.K1074K 0.18 TCGA-EE-A181-06 8 17871517 17871517 C T PCM1 Silent p.V1852V 0.11 TCGA-EE-A181-06 8 19276183 19276183 G A CSGALNACT1 Missense_Mutation p.P404L 0.25 tolerated(0.06) benign(0.297) TCGA-EE-A181-06 8 19805727 19805727 C T LPL Missense_Mutation p.A42V 0.09 deleterious(0.03) benign(0.021) TCGA-EE-A181-06 8 22006369 22006369 C T LGI3 Silent p.R317R 0.35 TCGA-EE-A181-06 8 22033798 22033798 C T BMP1 Silent p.I135I 0.26 TCGA-EE-A181-06 8 23003424 23003424 C T TNFRSF10D Missense_Mutation p.G165R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 24199149 24199149 C T ADAM28 Missense_Mutation p.S570L 0.16 tolerated(0.07) benign(0.21) TCGA-EE-A181-06 8 24254924 24254924 G A ADAMDEC1 Silent p.G194G 0.13 TCGA-EE-A181-06 8 24257714 24257714 G A ADAMDEC1 Missense_Mutation p.G348E 0.27 deleterious(0) probably_damaging(0.979) TCGA-EE-A181-06 8 25246714 25246714 T G DOCK5 Silent p.P1413P 0.16 TCGA-EE-A181-06 8 25341548 25341548 G A CDCA2 Missense_Mutation p.G396E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 25708263 25708263 G A EBF2 Missense_Mutation p.P515S 0.27 tolerated_low_confidence(0.09) probably_damaging(0.968) TCGA-EE-A181-06 8 26627587 26627587 C T ADRA1A Intron 0.14 TCGA-EE-A181-06 8 26722521 26722521 C T ADRA1A 5'UTR 0.37 TCGA-EE-A181-06 8 27098663 27098663 C T STMN4 Missense_Mutation p.V103I 0.19 tolerated(0.22) benign(0) TCGA-EE-A181-06 8 27098664 27098664 C T STMN4 Silent p.G102G 0.18 TCGA-EE-A181-06 8 27296843 27296843 C T PTK2B Missense_Mutation p.P588S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 27319156 27319156 C T CHRNA2 Missense_Mutation p.G527E 0.15 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-EE-A181-06 8 27516854 27516854 C T SCARA3 Silent p.F389F 0.30 TCGA-EE-A181-06 8 27610082 27610082 G A CCDC25 Missense_Mutation p.P64L 0.14 deleterious(0) probably_damaging(0.983) TCGA-EE-A181-06 8 28573693 28573693 C T EXTL3 Silent p.I39I 0.24 TCGA-EE-A181-06 8 28575121 28575121 C T EXTL3 Silent p.L515L 0.26 TCGA-EE-A181-06 8 28827731 28827731 C T HMBOX1 Silent p.S65S 0.18 TCGA-EE-A181-06 8 2886843 2886843 C T CSMD1 Missense_Mutation p.R2618Q 0.16 benign(0.135) TCGA-EE-A181-06 8 28997989 28997989 C T KIF13B Missense_Mutation p.G827E 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 8 28998067 28998067 C T KIF13B Missense_Mutation p.G801E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 2965246 2965246 C T CSMD1 Missense_Mutation p.E2277K 0.15 benign(0.093) TCGA-EE-A181-06 8 30651770 30651770 G A PPP2CB Missense_Mutation p.P172S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 30694423 30694423 C T TEX15 Missense_Mutation p.R2743Q 0.24 tolerated(1) benign(0) TCGA-EE-A181-06 8 30703216 30703216 C T TEX15 Silent p.R1106R 0.16 TCGA-EE-A181-06 8 3165249 3165249 C A CSMD1 Missense_Mutation p.W1306C 0.14 probably_damaging(0.94) TCGA-EE-A181-06 8 3165250 3165250 C A CSMD1 Missense_Mutation p.W1306L 0.14 possibly_damaging(0.547) TCGA-EE-A181-06 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.15 probably_damaging(0.999) TCGA-EE-A181-06 8 3432542 3432542 G A CSMD1 Silent p.T423T 0.22 TCGA-EE-A181-06 8 3611545 3611545 G A CSMD1 Missense_Mutation p.P280S 0.17 probably_damaging(0.999) TCGA-EE-A181-06 8 36641997 36641997 C T KCNU1 Silent p.I23I 0.09 TCGA-EE-A181-06 8 36675216 36675216 C G KCNU1 Missense_Mutation p.F348L 0.10 deleterious(0.02) possibly_damaging(0.559) TCGA-EE-A181-06 8 38005786 38005786 C T STAR Missense_Mutation p.E80K 0.20 tolerated(0.1) benign(0.117) TCGA-EE-A181-06 8 38005787 38005787 C T STAR Silent p.G79G 0.20 TCGA-EE-A181-06 8 38275794 38275794 G A FGFR1 Missense_Mutation p.S492F 0.17 deleterious(0.05) probably_damaging(1) TCGA-EE-A181-06 8 38677384 38677384 T C TACC1 Missense_Mutation p.S208P 0.14 tolerated(0.38) benign(0.001) TCGA-EE-A181-06 8 3889576 3889576 C T CSMD1 Missense_Mutation p.G154E 0.22 probably_damaging(1) TCGA-EE-A181-06 8 3889615 3889615 G A CSMD1 Missense_Mutation p.P141L 0.18 probably_damaging(1) TCGA-EE-A181-06 8 38899577 38899577 C T ADAM9 Missense_Mutation p.P415S 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 8 39044437 39044437 G A ADAM32 Missense_Mutation p.E309K 0.22 tolerated(0.68) benign(0.105) TCGA-EE-A181-06 8 39468047 39468047 G A ADAM18 Splice_Site p.X115_splice 0.16 TCGA-EE-A181-06 8 39525535 39525535 C T ADAM18 Missense_Mutation p.P449S 0.10 tolerated(0.08) probably_damaging(0.936) TCGA-EE-A181-06 8 39535044 39535044 T G ADAM18 Silent p.P540P 0.23 TCGA-EE-A181-06 8 39782275 39782275 C T IDO1 Missense_Mutation p.R231C 0.10 deleterious(0) probably_damaging(0.988) TCGA-EE-A181-06 8 40554838 40554838 G A ZMAT4 Missense_Mutation p.S92F 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 8 41552314 41552314 C T ANK1 Silent p.G1082G 0.14 TCGA-EE-A181-06 8 41906403 41906403 C T KAT6A Silent p.R31R 0.50 TCGA-EE-A181-06 8 42587062 42587062 G A CHRNB3 Silent p.L204L 0.15 TCGA-EE-A181-06 8 48794039 48794039 G A PRKDC Missense_Mutation p.P1668S 0.34 benign(0.013) TCGA-EE-A181-06 8 48805836 48805836 G A PRKDC Missense_Mutation p.A1237V 0.15 benign(0.008) TCGA-EE-A181-06 8 49643123 49643123 C T EFCAB1 Missense_Mutation p.G99R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 51449329 51449329 C T SNTG1 Missense_Mutation p.S214L 0.13 deleterious(0) benign(0.047) TCGA-EE-A181-06 8 52320655 52320655 C T PXDNL Missense_Mutation p.D1177N 0.51 tolerated(1) benign(0.009) TCGA-EE-A181-06 8 52320835 52320835 G A PXDNL Missense_Mutation p.L1117F 0.09 tolerated(0.1) possibly_damaging(0.808) TCGA-EE-A181-06 8 53025757 53025757 C T ST18 3'UTR 0.11 TCGA-EE-A181-06 8 53073993 53073993 G A ST18 Silent p.F512F 0.11 TCGA-EE-A181-06 8 53084937 53084937 C T ST18 Missense_Mutation p.D162N 0.15 tolerated(0.12) benign(0.013) TCGA-EE-A181-06 8 55537937 55537937 C T RP1 Missense_Mutation p.H499Y 0.09 tolerated(0.08) possibly_damaging(0.826) TCGA-EE-A181-06 8 55538573 55538573 G A RP1 Missense_Mutation p.E711K 0.09 deleterious(0.03) benign(0.293) TCGA-EE-A181-06 8 55538799 55538799 G A RP1 Missense_Mutation p.S786N 0.34 tolerated(0.25) benign(0.026) TCGA-EE-A181-06 8 55539065 55539065 G A RP1 Missense_Mutation p.D875N 0.21 tolerated(0.3) benign(0.004) TCGA-EE-A181-06 8 55539817 55539817 C T RP1 Silent p.S1125S 0.10 TCGA-EE-A181-06 8 55540397 55540397 G A RP1 Missense_Mutation p.E1319K 0.10 deleterious(0.04) benign(0.232) TCGA-EE-A181-06 8 55540533 55540533 G A RP1 Missense_Mutation p.R1364K 0.19 tolerated(0.4) benign(0.03) TCGA-EE-A181-06 8 55541384 55541384 C T RP1 Missense_Mutation p.P1648S 0.15 tolerated(0.44) benign(0.002) TCGA-EE-A181-06 8 55541395 55541395 C T RP1 Silent p.T1651T 0.15 TCGA-EE-A181-06 8 55542526 55542526 G A RP1 Silent p.L2028L 0.09 TCGA-EE-A181-06 8 56436505 56436505 G A XKR4 Missense_Mutation p.D558N 0.18 tolerated(0.1) benign(0.158) TCGA-EE-A181-06 8 57353980 57353980 G A PENK Missense_Mutation p.R219C 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 8 59404192 59404192 C T CYP7A1 Missense_Mutation p.E453K 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 8 59851945 59851945 A C TOX Missense_Mutation p.H109Q 0.13 tolerated(0.51) benign(0.188) TCGA-EE-A181-06 8 61496781 61496781 C T RAB2A Silent p.S67S 0.11 TCGA-EE-A181-06 8 62289182 62289182 C T CLVS1 Silent p.I158I 0.09 TCGA-EE-A181-06 8 63976871 63976871 G A TTPA Missense_Mutation p.S186L 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A181-06 8 6420387 6420387 C T ANGPT2 Silent p.R23R 0.15 TCGA-EE-A181-06 8 6614771 6614771 G A AGPAT5 Silent p.K319K 0.14 TCGA-EE-A181-06 8 66963832 66963832 G A DNAJC5B Missense_Mutation p.G17E 0.21 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A181-06 8 67062683 67062683 G A TRIM55 Missense_Mutation p.E323K 0.20 tolerated(0.19) benign(0.011) TCGA-EE-A181-06 8 6728140 6728140 T A DEFB1 3'UTR 0.15 TCGA-EE-A181-06 8 67969657 67969657 G A COPS5 Silent p.S177S 0.25 TCGA-EE-A181-06 8 68007618 68007618 C T CSPP1 Missense_Mutation p.P201S 0.10 tolerated(0.09) benign(0.031) TCGA-EE-A181-06 8 68950452 68950452 T C PREX2 Missense_Mutation p.I255T 0.24 deleterious(0) possibly_damaging(0.714) TCGA-EE-A181-06 8 68972989 68972989 A G PREX2 Silent p.L438L 0.22 TCGA-EE-A181-06 8 69728180 69728180 G A C8orf34 Missense_Mutation p.G537S 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A181-06 8 70617364 70617364 C T SLCO5A1 Missense_Mutation p.M508I 0.14 deleterious(0.04) benign(0.262) TCGA-EE-A181-06 8 70617386 70617386 C T SLCO5A1 Missense_Mutation p.R501K 0.14 tolerated(0.82) benign(0.101) TCGA-EE-A181-06 8 70981484 70981484 G A PRDM14 Silent p.F204F 0.45 TCGA-EE-A181-06 8 71039182 71039182 C T NCOA2 Missense_Mutation p.R1261Q 0.16 tolerated(0.77) possibly_damaging(0.578) TCGA-EE-A181-06 8 72246358 72246358 C T EYA1 Missense_Mutation p.G59E 0.20 tolerated(0.15) benign(0.009) TCGA-EE-A181-06 8 73848351 73848351 C T KCNB2 Missense_Mutation p.S254F 0.15 deleterious(0) possibly_damaging(0.823) TCGA-EE-A181-06 8 73848772 73848772 G A KCNB2 Silent p.G394G 0.35 TCGA-EE-A181-06 8 74859020 74859020 A T TCEB1 Missense_Mutation p.F62I 0.13 deleterious(0) probably_damaging(0.948) TCGA-EE-A181-06 8 77616520 77616520 T C ZFHX4 Missense_Mutation p.V66A 0.22 benign(0.005) TCGA-EE-A181-06 8 77616914 77616914 C T ZFHX4 Silent p.I197I 0.13 TCGA-EE-A181-06 8 77763658 77763658 C T ZFHX4 Missense_Mutation p.P1501S 0.34 possibly_damaging(0.803) TCGA-EE-A181-06 8 77764369 77764369 C T ZFHX4 Missense_Mutation p.L1738F 0.57 possibly_damaging(0.765) TCGA-EE-A181-06 8 77767954 77767954 C T ZFHX4 Nonsense_Mutation p.R2933* 0.15 TCGA-EE-A181-06 8 77768353 77768353 C T ZFHX4 Missense_Mutation p.R3066C 0.11 probably_damaging(0.993) TCGA-EE-A181-06 8 77768515 77768515 G A ZFHX4 Missense_Mutation p.G3120R 0.38 probably_damaging(0.999) TCGA-EE-A181-06 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.15 TCGA-EE-A181-06 8 79650870 79650870 C T IL7 Missense_Mutation p.E77K 0.12 deleterious(0.02) possibly_damaging(0.621) TCGA-EE-A181-06 8 80965594 80965594 C T TPD52 Silent p.R109R 0.12 TCGA-EE-A181-06 8 82355588 82355588 C T PMP2 3'UTR 0.17 TCGA-EE-A181-06 8 82392784 82392784 C T FABP4 Missense_Mutation p.M41I 0.19 tolerated(0.16) benign(0.002) TCGA-EE-A181-06 8 82439285 82439285 C T FABP12 Silent p.T106T 0.18 TCGA-EE-A181-06 8 82441702 82441702 C T FABP12 Missense_Mutation p.E73K 0.10 deleterious(0.02) probably_damaging(1) TCGA-EE-A181-06 8 82606756 82606756 A G SLC10A5 Missense_Mutation p.I151T 0.26 deleterious(0) benign(0.247) TCGA-EE-A181-06 8 82751866 82751866 T C SNX16 Missense_Mutation p.E119G 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 8 85686847 85686847 G A RALYL Missense_Mutation p.R110K 0.42 deleterious(0.02) probably_damaging(0.957) TCGA-EE-A181-06 8 87076279 87076279 A G PSKH2 Missense_Mutation p.L256P 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 8 87229936 87229936 T C SLC7A13 Missense_Mutation p.I314M 0.23 tolerated(0.22) benign(0.216) TCGA-EE-A181-06 8 87557023 87557023 A G CPNE3 Missense_Mutation p.Q230R 0.30 tolerated(0.45) benign(0.005) TCGA-EE-A181-06 8 87590964 87590964 C T CNGB3 Missense_Mutation p.A686T 0.10 tolerated(0.18) benign(0.01) TCGA-EE-A181-06 8 8877879 8877879 T C ERI1 Missense_Mutation p.F238L 0.21 deleterious(0) probably_damaging(0.957) TCGA-EE-A181-06 8 89053923 89053923 C T MMP16 Missense_Mutation p.M530I 0.17 deleterious(0) probably_damaging(0.919) TCGA-EE-A181-06 8 89054002 89054002 C G MMP16 Missense_Mutation p.G504A 0.37 tolerated(0.15) benign(0.432) TCGA-EE-A181-06 8 89086840 89086840 G A MMP16 Silent p.F405F 0.08 TCGA-EE-A181-06 8 92988143 92988143 C T RUNX1T1 Nonsense_Mutation p.W457* 0.08 TCGA-EE-A181-06 8 94935987 94935987 C T PDP1 3'UTR 0.36 TCGA-EE-A181-06 8 95265325 95265325 C T GEM Missense_Mutation p.R116Q 0.11 tolerated(0.08) benign(0.103) TCGA-EE-A181-06 8 9592514 9592514 G C TNKS Missense_Mutation p.R818T 0.19 tolerated(0.08) probably_damaging(0.995) TCGA-EE-A181-06 8 95952372 95952372 A G TP53INP1 Silent p.P63P 0.10 TCGA-EE-A181-06 8 9610109 9610109 C T TNKS Silent p.H1042H 0.17 TCGA-EE-A181-06 8 97258150 97258150 G A MTERFD1 Silent p.L279L 0.42 TCGA-EE-A181-06 8 97258152 97258152 T A MTERFD1 Missense_Mutation p.D278V 0.42 deleterious(0) possibly_damaging(0.887) TCGA-EE-A181-06 8 99148749 99148749 G A POP1 Missense_Mutation p.E351K 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A181-06 8 99440421 99440421 G A KCNS2 Missense_Mutation p.D72N 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 9 100857249 100857249 G A TRIM14 Silent p.P200P 0.25 TCGA-EE-A181-06 9 101832019 101832019 G A COL15A1 Missense_Mutation p.E1340K 0.18 deleterious(0) benign(0.082) TCGA-EE-A181-06 9 104499744 104499744 C T GRIN3A Nonsense_Mutation p.W173* 0.25 TCGA-EE-A181-06 9 107288800 107288800 C T OR13C4 Missense_Mutation p.A231T 0.17 tolerated(0.22) benign(0.364) TCGA-EE-A181-06 9 107331529 107331529 C T OR13C8 Silent p.F27F 0.19 TCGA-EE-A181-06 9 111979238 111979238 G A EPB41L4B Silent p.L533L 0.27 TCGA-EE-A181-06 9 113065990 113065990 T - TXNDC8 Splice_Site p.X108_splice 0.41 TCGA-EE-A181-06 9 113192631 113192631 C T SVEP1 Missense_Mutation p.G1818E 0.29 probably_damaging(1) TCGA-EE-A181-06 9 113194887 113194887 C T SVEP1 Silent p.L1696L 0.21 TCGA-EE-A181-06 9 113547146 113547146 C A MUSK Missense_Mutation p.P479H 0.19 deleterious(0) possibly_damaging(0.67) TCGA-EE-A181-06 9 113704247 113704247 G A LPAR1 Missense_Mutation p.P83S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 9 114090630 114090630 G A OR2K2 Silent p.F28F 0.21 TCGA-EE-A181-06 9 114304050 114304050 G A ZNF483 Missense_Mutation p.G279R 0.38 tolerated(0.51) probably_damaging(0.953) TCGA-EE-A181-06 9 114304503 114304503 G A ZNF483 Missense_Mutation p.E430K 0.33 tolerated(0.33) possibly_damaging(0.621) TCGA-EE-A181-06 9 115806392 115806392 G A ZFP37 Missense_Mutation p.P169L 0.38 deleterious(0.03) benign(0.282) TCGA-EE-A181-06 9 117680378 117680378 C T TNFSF8 Missense_Mutation p.G79E 0.12 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A181-06 9 117791725 117791725 C T TNC Missense_Mutation p.R2028K 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 9 117810801 117810801 G A TNC Silent p.P1530P 0.13 TCGA-EE-A181-06 9 117819641 117819641 G A TNC Missense_Mutation p.S1457F 0.22 deleterious(0.05) probably_damaging(1) TCGA-EE-A181-06 9 117826273 117826273 G T TNC Missense_Mutation p.P1188T 0.38 tolerated(0.45) benign(0.07) TCGA-EE-A181-06 9 117853099 117853099 C T TNC Missense_Mutation p.D67N 0.36 deleterious(0.05) probably_damaging(0.979) TCGA-EE-A181-06 9 119097240 119097240 C T PAPPA Silent p.F1166F 0.16 TCGA-EE-A181-06 9 121929778 121929778 G A BRINP1 Missense_Mutation p.R624W 0.35 deleterious(0) possibly_damaging(0.545) TCGA-EE-A181-06 9 122075558 122075558 C T BRINP1 Missense_Mutation p.E26K 0.46 tolerated_low_confidence(0.83) benign(0.004) TCGA-EE-A181-06 9 123667328 123667328 G A TRAF1 Silent p.F407F 0.33 TCGA-EE-A181-06 9 125154756 125154756 C T PTGS1 Missense_Mutation p.S578F 0.37 deleterious(0) probably_damaging(0.968) TCGA-EE-A181-06 9 125273295 125273295 C T OR1J2 Missense_Mutation p.S72F 0.17 deleterious_low_confidence(0.02) benign(0.05) TCGA-EE-A181-06 9 125316141 125316141 C T OR1N2 Silent p.I231I 0.39 TCGA-EE-A181-06 9 125377471 125377471 C T OR1Q1 Missense_Mutation p.S152F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 9 125512861 125512861 C T OR1L6 Silent p.H245H 0.19 TCGA-EE-A181-06 9 126144643 126144643 G A DENND1A Missense_Mutation p.P700S 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A181-06 9 12695779 12695780 GA T TYRP1 Frame_Shift_Del p.G217Vfs*49 0.08 TCGA-EE-A181-06 9 128201234 128201234 T C MAPKAP1 Missense_Mutation p.K501E 0.56 tolerated(0.1) possibly_damaging(0.695) TCGA-EE-A181-06 9 128723127 128723127 C T PBX3 Silent p.S336S 0.29 TCGA-EE-A181-06 9 129453266 129453266 G A LMX1B Missense_Mutation p.E160K 0.36 deleterious(0.02) benign(0.202) TCGA-EE-A181-06 9 130656867 130656867 C T ST6GALNAC6 Missense_Mutation p.R74Q 0.42 benign(0.184) TCGA-EE-A181-06 9 131029752 131029752 G A GOLGA2 Silent p.N155N 0.60 TCGA-EE-A181-06 9 131598112 131598112 C T CCBL1 Silent p.K267K 0.44 TCGA-EE-A181-06 9 13168523 13168523 G A MPDZ Silent p.I1032I 0.23 TCGA-EE-A181-06 9 131860836 131860836 G A CRAT Silent p.I393I 0.32 TCGA-EE-A181-06 9 132658145 132658145 G A FNBP1 Silent p.V606V 0.25 TCGA-EE-A181-06 9 133370261 133370261 G A ASS1 Nonsense_Mutation p.W326* 0.18 TCGA-EE-A181-06 9 135538037 135538037 G A DDX31 Missense_Mutation p.P146S 0.15 tolerated(0.08) benign(0.076) TCGA-EE-A181-06 9 135796754 135796754 G A TSC1 Nonsense_Mutation p.R245* 0.48 TCGA-EE-A181-06 9 136081313 136081313 C T OBP2B Missense_Mutation p.E169K 0.15 tolerated(0.1) benign(0.259) TCGA-EE-A181-06 9 137622280 137622280 G A COL5A1 Missense_Mutation p.E375K 0.53 benign(0.14) TCGA-EE-A181-06 9 137806235 137806235 C T FCN1 Silent p.E101E 0.36 TCGA-EE-A181-06 9 138395439 138395439 C T MRPS2 Silent p.D117D 0.22 TCGA-EE-A181-06 9 138516028 138516028 C T GLT6D1 Missense_Mutation p.G249E 0.24 deleterious(0) probably_damaging(0.994) TCGA-EE-A181-06 9 138516029 138516029 C T GLT6D1 Missense_Mutation p.G249R 0.25 deleterious(0.03) probably_damaging(0.917) TCGA-EE-A181-06 9 138586187 138586187 G A SOHLH1 Intron 0.50 TCGA-EE-A181-06 9 139272788 139272788 G A SNAPC4 Missense_Mutation p.P1164L 0.45 deleterious(0.02) benign(0.286) TCGA-EE-A181-06 9 139275291 139275291 G A SNAPC4 Silent p.I800I 0.18 TCGA-EE-A181-06 9 140059743 140059743 G A GRIN1 Missense_Mutation p.D920N 0.21 deleterious_low_confidence(0.02) benign(0.169) TCGA-EE-A181-06 9 140109371 140109371 C T NDOR1 Silent p.L322L 0.36 TCGA-EE-A181-06 9 140109372 140109372 C T NDOR1 Missense_Mutation p.H323Y 0.38 deleterious(0) possibly_damaging(0.477) TCGA-EE-A181-06 9 140126549 140126549 G A SLC34A3 Silent p.L37L 0.22 TCGA-EE-A181-06 9 14722658 14722658 A G CER1 Silent p.L5L 0.28 TCGA-EE-A181-06 9 14750149 14750149 C T FREM1 Missense_Mutation p.V1845M 0.16 deleterious(0) probably_damaging(0.985) TCGA-EE-A181-06 9 14801743 14801743 A G FREM1 Missense_Mutation p.F1201L 0.16 tolerated(0.32) benign(0.001) TCGA-EE-A181-06 9 14823287 14823287 G A FREM1 Silent p.P736P 0.47 TCGA-EE-A181-06 9 15203850 15203850 G A TTC39B Silent p.L244L 0.19 TCGA-EE-A181-06 9 15744343 15744343 C T CCDC171 Missense_Mutation p.L708F 0.20 tolerated(0.09) benign(0.008) TCGA-EE-A181-06 9 16552729 16552729 G A BNC2 Silent p.H156H 0.14 TCGA-EE-A181-06 9 19058022 19058022 G A HAUS6 Missense_Mutation p.P915S 0.67 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A181-06 9 21077355 21077355 G A IFNB1 Silent p.L172L 0.30 TCGA-EE-A181-06 9 21971109 21971109 G C CDKN2A Missense_Mutation p.H83Q 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 9 23704940 23704940 G A ELAVL2 Missense_Mutation p.R155C 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 9 26978173 26978173 G A IFT74 Silent p.G56G 0.57 TCGA-EE-A181-06 9 27169586 27169586 G A TEK Missense_Mutation p.G196E 0.19 tolerated(0.19) benign(0.095) TCGA-EE-A181-06 9 27950308 27950308 G A LINGO2 Missense_Mutation p.P121L 0.43 deleterious(0.04) benign(0.252) TCGA-EE-A181-06 9 32632772 32632772 C T TAF1L Missense_Mutation p.E936K 0.25 deleterious(0) benign(0.063) TCGA-EE-A181-06 9 33465871 33465871 C G NOL6 Missense_Mutation p.V797L 0.38 tolerated(0.05) possibly_damaging(0.797) TCGA-EE-A181-06 9 35092159 35092159 G A PIGO Silent p.F575F 0.60 TCGA-EE-A181-06 9 36170051 36170051 C T CCIN Silent p.L184L 0.19 TCGA-EE-A181-06 9 39085744 39085744 C T CNTNAP3 Missense_Mutation p.G1144E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 9 43625319 43625319 C T SPATA31A6 Missense_Mutation p.G1123E 0.29 tolerated(1) benign(0) TCGA-EE-A181-06 9 43627092 43627092 G A SPATA31A6 Missense_Mutation p.S532F 0.31 deleterious(0.02) possibly_damaging(0.555) TCGA-EE-A181-06 9 5123083 5123083 C A JAK2 Missense_Mutation p.L1047I 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A181-06 9 5335571 5335571 C T RLN1 Missense_Mutation p.D80N 0.30 tolerated(0.14) benign(0.034) TCGA-EE-A181-06 9 5830894 5830894 G A ERMP1 Missense_Mutation p.S158L 0.38 tolerated(0.07) benign(0.019) TCGA-EE-A181-06 9 6012763 6012763 G A RANBP6 Missense_Mutation p.R949C 0.19 tolerated(0.06) possibly_damaging(0.608) TCGA-EE-A181-06 9 6252943 6252943 G A IL33 Missense_Mutation p.E141K 0.19 tolerated(0.13) benign(0.065) TCGA-EE-A181-06 9 6587222 6587222 C T GLDC Missense_Mutation p.G590E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 9 71842944 71842944 C T TJP2 Missense_Mutation p.P487L 0.36 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A181-06 9 72724664 72724664 G A MAMDC2 Missense_Mutation p.G150E 0.28 tolerated(0.4) benign(0.094) TCGA-EE-A181-06 9 72840934 72840934 G A MAMDC2 Missense_Mutation p.E683K 0.49 deleterious(0.02) benign(0.016) TCGA-EE-A181-06 9 73399008 73399008 G A TRPM3 Intron 0.25 TCGA-EE-A181-06 9 74359987 74359987 G A TMEM2 Silent p.I327I 0.17 TCGA-EE-A181-06 9 74360004 74360004 G A TMEM2 Missense_Mutation p.L322F 0.13 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A181-06 9 74526545 74526545 C T C9orf85 5'UTR 0.29 TCGA-EE-A181-06 9 75357378 75357378 C T TMC1 Missense_Mutation p.R158C 0.23 deleterious(0) probably_damaging(0.932) TCGA-EE-A181-06 9 77280476 77280476 G T RORB Missense_Mutation p.G322V 0.29 deleterious(0) probably_damaging(0.984) TCGA-EE-A181-06 9 77386640 77386640 C T TRPM6 Missense_Mutation p.R1172Q 0.16 tolerated(0.11) benign(0.02) TCGA-EE-A181-06 9 79118029 79118029 G A GCNT1 Silent p.T244T 0.26 TCGA-EE-A181-06 9 79323513 79323513 T C PRUNE2 Missense_Mutation p.D1226G 0.39 deleterious(0) possibly_damaging(0.743) TCGA-EE-A181-06 9 79324317 79324317 G A PRUNE2 Missense_Mutation p.S958L 0.13 tolerated(1) benign(0.038) TCGA-EE-A181-06 9 84604719 84604719 G A SPATA31D1 Silent p.R71R 0.25 TCGA-EE-A181-06 9 8471025 8471025 C T PTPRD Nonsense_Mutation p.W1158* 0.51 TCGA-EE-A181-06 9 8504401 8504401 C T PTPRD Missense_Mutation p.R561Q 0.31 tolerated(0.37) possibly_damaging(0.512) TCGA-EE-A181-06 9 8528669 8528669 G A PTPRD Missense_Mutation p.P155S 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 9 85913696 85913696 G A FRMD3 Missense_Mutation p.S346F 0.34 deleterious(0) possibly_damaging(0.726) TCGA-EE-A181-06 9 85958174 85958174 C T FRMD3 Missense_Mutation p.D135N 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 9 87570406 87570406 G A NTRK2 Missense_Mutation p.D716N 0.43 deleterious(0) possibly_damaging(0.79) TCGA-EE-A181-06 9 90500615 90500615 C T SPATA31E1 Missense_Mutation p.P405S 0.50 tolerated(0.68) benign(0.047) TCGA-EE-A181-06 9 92006203 92006203 G A SEMA4D Silent p.I250I 0.20 TCGA-EE-A181-06 9 93639981 93639981 G A SYK Missense_Mutation p.G437E 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 9 93983214 93983214 G A AUH Missense_Mutation p.S239F 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 X 100608324 100608324 T C BTK Missense_Mutation p.E589G 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A181-06 X 101141652 101141652 G A ZMAT1 Missense_Mutation p.S186F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 X 101396161 101396161 C T TCEAL6 Missense_Mutation p.R48Q 0.35 tolerated(0.25) benign(0.32) TCGA-EE-A181-06 X 10176551 10176551 G A CLCN4 Missense_Mutation p.G437D 0.35 deleterious(0.05) benign(0.168) TCGA-EE-A181-06 X 102337212 102337212 C T NXF3 Silent p.T287T 0.39 TCGA-EE-A181-06 X 105011477 105011477 G A IL1RAPL2 Silent p.T628T 0.28 TCGA-EE-A181-06 X 106171926 106171926 G T CLDN2 Missense_Mutation p.M156I 0.20 tolerated(0.08) possibly_damaging(0.685) TCGA-EE-A181-06 X 107402885 107402885 T A COL4A6 Missense_Mutation p.K1541I 0.17 benign(0.393) TCGA-EE-A181-06 X 107422581 107422581 G A COL4A6 Missense_Mutation p.P741L 0.57 probably_damaging(0.992) TCGA-EE-A181-06 X 107431774 107431774 C T COL4A6 Silent p.G521G 0.25 TCGA-EE-A181-06 X 110490610 110490610 G A CAPN6 Missense_Mutation p.P577S 0.26 deleterious(0.05) probably_damaging(0.96) TCGA-EE-A181-06 X 111025181 111025181 G T TRPC5 Silent p.R694R 0.32 TCGA-EE-A181-06 X 114953504 114953504 C T RP1-241P17.4 Missense_Mutation p.D16N 0.60 tolerated(0.12) benign(0.003) TCGA-EE-A181-06 X 115590037 115590037 G A SLC6A14 Silent p.G615G 0.21 TCGA-EE-A181-06 X 117033109 117033109 T C KLHL13 Missense_Mutation p.Q580R 0.30 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A181-06 X 117054318 117054318 G A KLHL13 Nonsense_Mutation p.R89* 0.30 TCGA-EE-A181-06 X 118146899 118146899 T A LONRF3 Intron 0.42 TCGA-EE-A181-06 X 118223552 118223552 C T KIAA1210 Silent p.L547L 0.28 TCGA-EE-A181-06 X 122387391 122387391 G A GRIA3 Missense_Mutation p.R169Q 0.31 tolerated(0.11) possibly_damaging(0.87) TCGA-EE-A181-06 X 123034363 123034363 C T XIAP Missense_Mutation p.P374S 0.28 tolerated(0.09) benign(0.002) TCGA-EE-A181-06 X 123480514 123480514 C T SH2D1A Missense_Mutation p.H8Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 X 123519762 123519762 C T TENM1 Silent p.P1947P 0.25 TCGA-EE-A181-06 X 123525979 123525979 C A TENM1 Nonsense_Mutation p.E1871* 0.32 TCGA-EE-A181-06 X 123556265 123556265 C T TENM1 Missense_Mutation p.S1443N 0.24 tolerated(0.49) benign(0.002) TCGA-EE-A181-06 X 123637533 123637533 C T TENM1 Missense_Mutation p.E1108K 0.13 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A181-06 X 123779112 123779112 C T TENM1 Missense_Mutation p.G586E 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 X 123779113 123779113 C T TENM1 Missense_Mutation p.G586R 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 X 123839007 123839007 G A TENM1 Missense_Mutation p.P291S 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A181-06 X 12736796 12736796 G A FRMPD4 Missense_Mutation p.G1284E 0.17 tolerated_low_confidence(0.05) benign(0.258) TCGA-EE-A181-06 X 128723830 128723830 C T OCRL Silent p.S826S 0.19 TCGA-EE-A181-06 X 128723831 128723831 C T OCRL Nonsense_Mutation p.Q827* 0.19 TCGA-EE-A181-06 X 12937473 12937473 G A TLR8 Missense_Mutation p.G105E 0.34 tolerated(1) benign(0) TCGA-EE-A181-06 X 129377577 129377577 G A ZNF280C Missense_Mutation p.S114F 0.22 deleterious(0) possibly_damaging(0.823) TCGA-EE-A181-06 X 130407535 130407535 G A IGSF1 3'UTR 0.56 TCGA-EE-A181-06 X 130411080 130411080 C T IGSF1 Missense_Mutation p.G819E 0.23 deleterious(0.01) benign(0.203) TCGA-EE-A181-06 X 130413299 130413299 C T IGSF1 Missense_Mutation p.G555R 0.26 tolerated(0.06) benign(0.067) TCGA-EE-A181-06 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.24 tolerated(0.29) benign(0.005) TCGA-EE-A181-06 X 132670091 132670091 C T GPC3 3'UTR 0.28 TCGA-EE-A181-06 X 132887946 132887946 G A GPC3 Nonsense_Mutation p.R199* 0.27 TCGA-EE-A181-06 X 134421067 134421067 C T ZNF75D 3'UTR 0.24 TCGA-EE-A181-06 X 134483107 134483107 C T ZNF449 Silent p.L143L 0.26 TCGA-EE-A181-06 X 134706880 134706880 C T DDX26B Silent p.I476I 0.30 TCGA-EE-A181-06 X 135431816 135431816 C T GPR112 Missense_Mutation p.P1984L 0.26 tolerated(0.09) benign(0.094) TCGA-EE-A181-06 X 136112390 136112390 C T GPR101 Missense_Mutation p.D482N 0.19 tolerated(0.17) benign(0.003) TCGA-EE-A181-06 X 136652328 136652328 C T ZIC3 3'UTR 0.17 TCGA-EE-A181-06 X 137715087 137715087 C T FGF13 Missense_Mutation p.G231E 0.34 tolerated_low_confidence(0.42) possibly_damaging(0.521) TCGA-EE-A181-06 X 137715094 137715094 C T FGF13 Missense_Mutation p.G229R 0.33 tolerated_low_confidence(0.42) benign(0.017) TCGA-EE-A181-06 X 139038647 139038647 G A CXorf66 Missense_Mutation p.S165F 0.25 tolerated(0.71) probably_damaging(0.919) TCGA-EE-A181-06 X 140995171 140995171 C T MAGEC1 Missense_Mutation p.H661Y 0.25 tolerated_low_confidence(0.97) benign(0.152) TCGA-EE-A181-06 X 140995249 140995249 G A MAGEC1 Missense_Mutation p.D687N 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.539) TCGA-EE-A181-06 X 140995273 140995273 C T MAGEC1 Missense_Mutation p.P695S 0.25 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A181-06 X 140995398 140995398 C T MAGEC1 Silent p.F736F 0.22 TCGA-EE-A181-06 X 140995987 140995987 G A MAGEC1 Missense_Mutation p.E933K 0.30 deleterious(0) unknown(0) TCGA-EE-A181-06 X 141291335 141291335 C T MAGEC2 Missense_Mutation p.E147K 0.31 tolerated(0.07) possibly_damaging(0.54) TCGA-EE-A181-06 X 142795215 142795215 C T SPANXN2 Missense_Mutation p.D155N 0.23 tolerated_low_confidence(0.19) unknown(0) TCGA-EE-A181-06 X 142803923 142803923 C T SPANXN2 5'UTR 0.33 TCGA-EE-A181-06 X 150906984 150906984 G A CNGA2 Missense_Mutation p.S10N 0.30 tolerated_low_confidence(0.3) benign(0) TCGA-EE-A181-06 X 151130984 151130984 C T GABRE Silent p.R158R 0.15 TCGA-EE-A181-06 X 151131032 151131032 C T GABRE Silent p.L142L 0.22 TCGA-EE-A181-06 X 151302969 151302969 G T MAGEA10 3'UTR 0.20 TCGA-EE-A181-06 X 151821814 151821814 C T GABRQ 3'UTR 0.28 TCGA-EE-A181-06 X 151896327 151896327 C T MAGEA12 3'Flank 0.31 TCGA-EE-A181-06 X 153128946 153128946 G A L1CAM Silent p.T1172T 0.52 TCGA-EE-A181-06 X 153135267 153135267 G A L1CAM Missense_Mutation p.P372S 0.27 tolerated(0.22) benign(0.044) TCGA-EE-A181-06 X 153609346 153609346 C T EMD Missense_Mutation p.S185F 0.38 deleterious(0) possibly_damaging(0.641) TCGA-EE-A181-06 X 154157568 154157568 G A F8 Silent p.L1499L 0.57 TCGA-EE-A181-06 X 15794942 15794942 T A CA5B Missense_Mutation p.S242T 0.18 deleterious(0.05) benign(0.147) TCGA-EE-A181-06 X 1584846 1584846 G A P2RY8 Silent p.F202F 0.22 TCGA-EE-A181-06 X 1714278 1714278 T C AKAP17A Missense_Mutation p.V255A 0.28 deleterious(0) benign(0.262) TCGA-EE-A181-06 X 17820124 17820124 C T RAI2 Missense_Mutation p.D3N 0.27 tolerated_low_confidence(0.11) benign(0.109) TCGA-EE-A181-06 X 18213513 18213513 C T BEND2 Silent p.V361V 0.24 TCGA-EE-A181-06 X 18338463 18338463 A T SCML2 Missense_Mutation p.L159I 0.27 tolerated(1) benign(0.007) TCGA-EE-A181-06 X 19564142 19564142 G C SH3KBP1 Missense_Mutation p.F507L 0.16 tolerated(0.57) benign(0.007) TCGA-EE-A181-06 X 2209608 2209608 G A DHRSX Missense_Mutation p.S108F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 X 23019767 23019767 T G DDX53 Silent p.L531L 0.25 TCGA-EE-A181-06 X 26212144 26212144 C T MAGEB6 Missense_Mutation p.P61S 0.20 tolerated(0.18) probably_damaging(0.95) TCGA-EE-A181-06 X 27997684 27997684 C T DCAF8L1 Missense_Mutation p.E590K 0.17 deleterious(0.02) benign(0.096) TCGA-EE-A181-06 X 2876364 2876365 CC T ARSE Frame_Shift_Del p.D46Tfs*16 0.09 TCGA-EE-A181-06 X 29973593 29973593 G A IL1RAPL1 Missense_Mutation p.E583K 0.20 deleterious(0.01) benign(0.411) TCGA-EE-A181-06 X 3002575 3002575 G A ARSF Nonsense_Mutation p.W233* 0.23 TCGA-EE-A181-06 X 30269117 30269117 C T MAGEB1 Silent p.N169N 0.28 TCGA-EE-A181-06 X 30269510 30269510 C T MAGEB1 Silent p.F300F 0.30 TCGA-EE-A181-06 X 30742289 30742289 C T GK Missense_Mutation p.P519S 0.33 tolerated(0.57) benign(0.001) TCGA-EE-A181-06 X 31089509 31089509 C T FTHL17 3'UTR 0.53 TCGA-EE-A181-06 X 31089887 31089887 C T FTHL17 Missense_Mutation p.D62N 0.34 deleterious(0.02) benign(0.009) TCGA-EE-A181-06 X 31792178 31792178 C T DMD Missense_Mutation p.E2481K 0.45 possibly_damaging(0.486) TCGA-EE-A181-06 X 3228008 3228008 G A MXRA5 Missense_Mutation p.R2746W 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 X 3229307 3229307 C T MXRA5 Missense_Mutation p.E2313K 0.18 tolerated(0.18) possibly_damaging(0.847) TCGA-EE-A181-06 X 3240459 3240459 C T MXRA5 Silent p.E1089E 0.22 TCGA-EE-A181-06 X 3240517 3240517 C T MXRA5 Missense_Mutation p.G1070E 0.20 tolerated(0.32) benign(0.003) TCGA-EE-A181-06 X 3240653 3240653 C T MXRA5 Missense_Mutation p.E1025K 0.27 tolerated(0.32) benign(0.214) TCGA-EE-A181-06 X 34148365 34148365 C T FAM47A Silent p.R677R 0.22 TCGA-EE-A181-06 X 34150032 34150032 C T FAM47A Missense_Mutation p.E122K 0.47 deleterious(0) probably_damaging(0.953) TCGA-EE-A181-06 X 35821024 35821024 G A MAGEB16 Silent p.G237G 0.27 TCGA-EE-A181-06 X 38147243 38147243 C T RPGR Missense_Mutation p.D542N 0.23 possibly_damaging(0.899) TCGA-EE-A181-06 X 38260626 38260626 G T OTC Missense_Mutation p.G162V 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A181-06 X 38525511 38525511 G A TSPAN7 Missense_Mutation p.G73D 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A181-06 X 40534535 40534535 G A MED14 Missense_Mutation p.P987S 0.27 deleterious(0) probably_damaging(0.918) TCGA-EE-A181-06 X 41646436 41646436 G A CASK Silent p.F91F 0.27 TCGA-EE-A181-06 X 43637965 43637965 G A MAOB Silent p.L367L 0.16 TCGA-EE-A181-06 X 45011044 45011044 G A CXorf36 Silent p.I385I 0.19 TCGA-EE-A181-06 X 47035920 47035920 C T RBM10 Nonsense_Mutation p.Q200* 0.32 TCGA-EE-A181-06 X 47426506 47426506 C T ARAF Silent p.S283S 0.44 TCGA-EE-A181-06 X 49021369 49021369 C T MAGIX Missense_Mutation p.P150S 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A181-06 X 49063015 49063015 C T CACNA1F Missense_Mutation p.G1821D 0.31 tolerated(0.63) benign(0.044) TCGA-EE-A181-06 X 50052923 50052923 C T CCNB3 Missense_Mutation p.S585L 0.29 tolerated(1) benign(0.007) TCGA-EE-A181-06 X 50054033 50054033 C T CCNB3 Missense_Mutation p.P955L 0.16 tolerated(0.3) benign(0.012) TCGA-EE-A181-06 X 50089709 50089709 G A CCNB3 Missense_Mutation p.R1238Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A181-06 X 50133404 50133404 C T DGKK RNA 0.20 TCGA-EE-A181-06 X 50167291 50167291 A G DGKK RNA 0.37 TCGA-EE-A181-06 X 52682505 52682505 G A SSX7 Silent p.A6A 0.17 TCGA-EE-A181-06 X 54954169 54954169 C T TRO Silent p.S611S 0.32 TCGA-EE-A181-06 X 54957785 54957785 T C TRO 3'UTR 0.22 TCGA-EE-A181-06 X 5950738 5950738 C T NLGN4X Intron 0.21 TCGA-EE-A181-06 X 67273531 67273531 C T OPHN1 Silent p.K760K 0.21 TCGA-EE-A181-06 X 67316726 67316726 C T OPHN1 Missense_Mutation p.E558K 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A181-06 X 70339657 70339657 C T MED12 Missense_Mutation p.S109F 0.45 benign(0.378) TCGA-EE-A181-06 X 71427393 71427393 C T ERCC6L Silent p.K408K 0.48 TCGA-EE-A181-06 X 7171259 7171259 C T STS Silent p.L12L 0.57 TCGA-EE-A181-06 X 71840645 71840645 G A PHKA1 Silent p.F689F 0.52 TCGA-EE-A181-06 X 71870317 71870317 C T PHKA1 Missense_Mutation p.G416E 0.29 deleterious(0) possibly_damaging(0.877) TCGA-EE-A181-06 X 73045047 73045047 C T XIST RNA 0.35 TCGA-EE-A181-06 X 73053139 73053139 G A XIST RNA 0.37 TCGA-EE-A181-06 X 73963193 73963193 C T KIAA2022 Missense_Mutation p.G400E 0.33 tolerated(1) benign(0.003) TCGA-EE-A181-06 X 73963427 73963427 C T KIAA2022 Missense_Mutation p.R322Q 0.26 tolerated(0.11) probably_damaging(0.987) TCGA-EE-A181-06 X 73963788 73963788 C T KIAA2022 Missense_Mutation p.D202N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A181-06 X 75649401 75649401 C T MAGEE1 Missense_Mutation p.P360S 0.28 tolerated_low_confidence(0.46) benign(0.007) TCGA-EE-A181-06 X 77528275 77528275 C T CYSLTR1 Silent p.K323K 0.52 TCGA-EE-A181-06 X 78216316 78216316 C T P2RY10 Missense_Mutation p.P100L 0.20 deleterious(0) probably_damaging(0.928) TCGA-EE-A181-06 X 78216954 78216954 C T P2RY10 Missense_Mutation p.R313C 0.19 deleterious(0.01) benign(0.317) TCGA-EE-A181-06 X 78427049 78427049 C T GPR174 Missense_Mutation p.S182F 0.20 deleterious(0.01) benign(0.206) TCGA-EE-A181-06 X 83128246 83128246 C T CYLC1 Missense_Mutation p.S177F 0.17 tolerated(0.73) benign(0.354) TCGA-EE-A181-06 X 83128355 83128355 C T CYLC1 Silent p.F213F 0.67 TCGA-EE-A181-06 X 84363411 84363411 C T SATL1 Missense_Mutation p.M188I 0.24 tolerated(0.59) benign(0.043) TCGA-EE-A181-06 X 84526651 84526651 G A ZNF711 Silent p.R701R 0.10 TCGA-EE-A181-06 X 99920601 99920601 C A SRPX2 Missense_Mutation p.A243D 0.47 deleterious(0) probably_damaging(0.939) TCGA-EE-A181-06 X 99943300 99943300 T A SYTL4 Intron 0.26 TCGA-EE-A181-06 X 99955922 99955922 C T SYTL4 Silent p.K170K 0.50 TCGA-EE-A182-06 10 100152729 100152729 G A PYROXD2 Silent p.T299T 0.39 TCGA-EE-A182-06 10 100177398 100177398 G A HPS1 Missense_Mutation p.P676S 0.18 deleterious(0.02) benign(0.329) TCGA-EE-A182-06 10 101464379 101464379 C T ENTPD7 Missense_Mutation p.P585L 0.18 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A182-06 10 101814184 101814184 C T CPN1 Missense_Mutation p.G344E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 10 102239763 102239763 C T WNT8B Missense_Mutation p.R79C 0.30 deleterious(0) probably_damaging(0.953) TCGA-EE-A182-06 10 103900286 103900286 T C PPRC1 Missense_Mutation p.V674A 0.19 tolerated_low_confidence(0.14) benign(0.009) TCGA-EE-A182-06 10 103987394 103987394 T A ELOVL3 Missense_Mutation p.F38Y 0.24 deleterious(0.04) benign(0.05) TCGA-EE-A182-06 10 103987395 103987395 C T ELOVL3 Silent p.F38F 0.24 TCGA-EE-A182-06 10 103988208 103988208 G A ELOVL3 Missense_Mutation p.G90R 0.32 tolerated(0.35) possibly_damaging(0.892) TCGA-EE-A182-06 10 105215174 105215174 G A CALHM1 Nonsense_Mutation p.Q296* 0.21 TCGA-EE-A182-06 10 111879043 111879043 C T ADD3 Silent p.D264D 0.25 TCGA-EE-A182-06 10 112364028 112364028 G A SMC3 Missense_Mutation p.D1208N 0.27 deleterious(0) benign(0.014) TCGA-EE-A182-06 10 112641009 112641009 A G PDCD4 Missense_Mutation p.D21G 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.877) TCGA-EE-A182-06 10 116735148 116735148 G A TRUB1 3'UTR 0.17 TCGA-EE-A182-06 10 121675273 121675273 G A SEC23IP Silent p.R472R 0.35 TCGA-EE-A182-06 10 12221127 12221127 A G NUDT5 Missense_Mutation p.W46R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 10 124358450 124358450 C T DMBT1 Silent p.A1039A 0.59 TCGA-EE-A182-06 10 124358464 124358464 G A DMBT1 Missense_Mutation p.G1044E 0.58 deleterious(0.02) unknown(0) TCGA-EE-A182-06 10 124457628 124457628 C T C10orf120 Missense_Mutation p.R210Q 0.66 tolerated(0.16) benign(0.001) TCGA-EE-A182-06 10 124802592 124802592 G A ACADSB Missense_Mutation p.D238N 0.65 deleterious(0.01) benign(0.042) TCGA-EE-A182-06 10 1279772 1279772 G A ADARB2 Silent p.D459D 0.31 TCGA-EE-A182-06 10 12940554 12940554 C T CCDC3 Silent p.K225K 0.22 TCGA-EE-A182-06 10 134627675 134627675 C T TTC40 Missense_Mutation p.G2457R 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 10 134627676 134627676 C T TTC40 Silent p.L2456L 0.56 TCGA-EE-A182-06 10 134743195 134743195 A T TTC40 Intron 0.54 TCGA-EE-A182-06 10 135440236 135440236 C T FRG2B Missense_Mutation p.G4E 0.05 tolerated(0.2) benign(0.225) TCGA-EE-A182-06 10 15106425 15106425 G A OLAH Missense_Mutation p.R162K 0.20 tolerated(0.34) benign(0.014) TCGA-EE-A182-06 10 21129757 21129757 C T NEBL Missense_Mutation p.E417K 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A182-06 10 21178808 21178808 T A NEBL Missense_Mutation p.N75I 0.23 tolerated(0.08) benign(0.183) TCGA-EE-A182-06 10 24834704 24834704 G A KIAA1217 Intron 0.29 TCGA-EE-A182-06 10 26414365 26414365 G A MYO3A Missense_Mutation p.E648K 0.17 deleterious(0.04) benign(0.1) TCGA-EE-A182-06 10 26442813 26442813 A G MYO3A Missense_Mutation p.I890M 0.18 tolerated(0.12) benign(0.01) TCGA-EE-A182-06 10 26575315 26575315 C T GAD2 Silent p.L426L 0.32 TCGA-EE-A182-06 10 27687745 27687745 G A PTCHD3 Silent p.P594P 0.26 TCGA-EE-A182-06 10 27702972 27702972 C T PTCHD3 Missense_Mutation p.E70K 0.31 tolerated_low_confidence(0.71) benign(0.008) TCGA-EE-A182-06 10 28225687 28225687 C T ARMC4 Nonsense_Mutation p.W740* 0.22 TCGA-EE-A182-06 10 28233336 28233336 C T ARMC4 Missense_Mutation p.E520K 0.40 tolerated(0.14) benign(0.188) TCGA-EE-A182-06 10 28358748 28358748 C T MPP7 Missense_Mutation p.R386Q 0.32 tolerated(0.5) possibly_damaging(0.877) TCGA-EE-A182-06 10 30315735 30315735 G A KIAA1462 Silent p.P1114P 0.26 TCGA-EE-A182-06 10 30315736 30315736 G A KIAA1462 Missense_Mutation p.P1114L 0.26 deleterious(0.03) probably_damaging(0.923) TCGA-EE-A182-06 10 31810202 31810202 C T ZEB1 Missense_Mutation p.P648S 0.42 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A182-06 10 33491907 33491907 C T NRP1 Silent p.P592P 0.20 TCGA-EE-A182-06 10 34400111 34400111 G A PARD3 Missense_Mutation p.P1353S 0.25 tolerated_low_confidence(0.06) benign(0.031) TCGA-EE-A182-06 10 37478473 37478473 G A ANKRD30A Missense_Mutation p.G778R 0.46 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A182-06 10 395384 395384 G A DIP2C Missense_Mutation p.A999V 0.35 tolerated(0.82) benign(0.026) TCGA-EE-A182-06 10 43016349 43016349 G A ZNF37BP RNA 0.29 TCGA-EE-A182-06 10 43312104 43312104 C T BMS1 Missense_Mutation p.S796L 0.17 tolerated(0.15) benign(0.021) TCGA-EE-A182-06 10 43650774 43650774 C T CSGALNACT2 Silent p.A59A 0.34 TCGA-EE-A182-06 10 43651086 43651086 C T CSGALNACT2 Silent p.L163L 0.30 TCGA-EE-A182-06 10 46321421 46321421 G A AGAP4 Missense_Mutation p.S645F 0.20 deleterious(0) possibly_damaging(0.82) TCGA-EE-A182-06 10 47000053 47000053 G A GPRIN2 Nonsense_Mutation p.W391* 0.09 TCGA-EE-A182-06 10 47088005 47088005 C T NPY4R 3'UTR 0.09 TCGA-EE-A182-06 10 48385879 48385879 G A RBP3 Silent p.I1071I 0.29 TCGA-EE-A182-06 10 48388515 48388515 C T RBP3 Missense_Mutation p.S788N 0.12 deleterious(0.01) possibly_damaging(0.517) TCGA-EE-A182-06 10 48388693 48388693 G A RBP3 Missense_Mutation p.L729F 0.29 tolerated(0.09) possibly_damaging(0.587) TCGA-EE-A182-06 10 48390122 48390122 G T RBP3 Silent p.A252A 0.29 TCGA-EE-A182-06 10 48413649 48413649 C T GDF2 Missense_Mutation p.D407N 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A182-06 10 49395325 49395325 C A FRMPD2 Missense_Mutation p.G726C 0.29 deleterious(0.05) possibly_damaging(0.907) TCGA-EE-A182-06 10 49687743 49687743 G A ARHGAP22 Silent p.S129S 0.42 TCGA-EE-A182-06 10 50121667 50121667 G A LRRC18 Silent p.P178P 0.20 TCGA-EE-A182-06 10 50740990 50740990 G A ERCC6-PGBD3 Silent p.P7P 0.38 TCGA-EE-A182-06 10 5141520 5141520 C T AKR1C3 Missense_Mutation p.A150V 0.31 deleterious(0.04) benign(0.399) TCGA-EE-A182-06 10 5203849 5203849 G A AKR1CL1 Silent p.L116L 0.27 TCGA-EE-A182-06 10 52580326 52580326 C T A1CF Missense_Mutation p.A293T 0.18 tolerated(0.39) benign(0.007) TCGA-EE-A182-06 10 52603817 52603817 G A A1CF Silent p.G63G 0.31 TCGA-EE-A182-06 10 55566598 55566598 G A PCDH15 Missense_Mutation p.S1596L 0.29 tolerated_low_confidence(0.22) benign(0.002) TCGA-EE-A182-06 10 61443980 61443980 A G SLC16A9 Missense_Mutation p.F24L 0.27 tolerated(0.59) possibly_damaging(0.534) TCGA-EE-A182-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.22 TCGA-EE-A182-06 10 61815475 61815475 C T ANK3 Missense_Mutation p.D4336N 0.27 benign(0.036) TCGA-EE-A182-06 10 6273263 6273263 T C PFKFB3 Intron 0.30 TCGA-EE-A182-06 10 67726406 67726406 C T CTNNA3 Silent p.E788E 0.26 TCGA-EE-A182-06 10 70644268 70644268 C T STOX1 Missense_Mutation p.S239F 0.32 deleterious(0.02) benign(0.172) TCGA-EE-A182-06 10 70737410 70737410 C T DDX21 Missense_Mutation p.S623F 0.26 deleterious(0) possibly_damaging(0.492) TCGA-EE-A182-06 10 71175909 71175909 G A TACR2 Silent p.I57I 0.31 TCGA-EE-A182-06 10 73330619 73330619 G A CDH23 Missense_Mutation p.D233N 0.50 tolerated(0.38) benign(0.057) TCGA-EE-A182-06 10 73520469 73520469 G A C10orf54 Intron 0.58 TCGA-EE-A182-06 10 73594158 73594158 G A PSAP Silent p.L49L 0.32 TCGA-EE-A182-06 10 75082833 75082833 G A TTC18 Missense_Mutation p.S337L 0.39 deleterious(0.04) possibly_damaging(0.815) TCGA-EE-A182-06 10 75551948 75551948 G A ZSWIM8 Missense_Mutation p.G551S 0.18 tolerated_low_confidence(0.57) benign(0.009) TCGA-EE-A182-06 10 75552441 75552441 C T ZSWIM8 Missense_Mutation p.T715I 0.33 tolerated(0.18) benign(0.044) TCGA-EE-A182-06 10 7618460 7618460 G A ITIH5 Missense_Mutation p.P645L 0.24 tolerated(0.07) possibly_damaging(0.484) TCGA-EE-A182-06 10 82331305 82331305 C T SH2D4B Silent p.L156L 0.23 TCGA-EE-A182-06 10 85960389 85960389 C T CDHR1 Silent p.V157V 0.48 TCGA-EE-A182-06 10 85972965 85972965 C T CDHR1 Missense_Mutation p.S634F 0.30 tolerated(0.68) benign(0.013) TCGA-EE-A182-06 10 87484278 87484278 G A GRID1 Silent p.F563F 0.29 TCGA-EE-A182-06 10 88769257 88769257 G A RP11-96C23.10 3'Flank 0.23 TCGA-EE-A182-06 10 89120453 89120453 G A NUTM2D Missense_Mutation p.A128T 0.16 tolerated(0.2) possibly_damaging(0.796) TCGA-EE-A182-06 10 90673100 90673100 C T STAMBPL1 Silent p.S221S 0.24 TCGA-EE-A182-06 10 91066442 91066442 C T IFIT2 Silent p.A243A 0.27 TCGA-EE-A182-06 10 91066443 91066443 C T IFIT2 Missense_Mutation p.P244S 0.27 tolerated(0.22) benign(0.382) TCGA-EE-A182-06 10 92634652 92634652 C T RPP30 Missense_Mutation p.H37Y 0.35 tolerated(0.44) benign(0.015) TCGA-EE-A182-06 10 93940758 93940758 A G CPEB3 Missense_Mutation p.F395S 0.21 tolerated(0.35) benign(0.446) TCGA-EE-A182-06 10 95076537 95076537 G A MYOF Nonsense_Mutation p.R1878* 0.27 TCGA-EE-A182-06 10 95111581 95111581 G A MYOF Silent p.F1168F 0.28 TCGA-EE-A182-06 10 96030337 96030337 G A PLCE1 Missense_Mutation p.R1495Q 0.28 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A182-06 10 96122658 96122658 C A NOC3L 5'UTR 0.26 TCGA-EE-A182-06 10 96740982 96740982 G A CYP2C9 Missense_Mutation p.R335Q 0.31 tolerated(0.08) possibly_damaging(0.691) TCGA-EE-A182-06 10 96748604 96748604 G A CYP2C9 Missense_Mutation p.G431E 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 10 96802787 96802787 G A CYP2C8 Missense_Mutation p.P337S 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A182-06 11 100169958 100169958 G A CNTN5 Missense_Mutation p.G817E 0.44 deleterious(0) probably_damaging(0.976) TCGA-EE-A182-06 11 100226884 100226884 C T CNTN5 Missense_Mutation p.S1079F 0.44 tolerated(0.72) benign(0.013) TCGA-EE-A182-06 11 102573610 102573610 G A MMP27 Missense_Mutation p.H165Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 11 102650040 102650040 C T MMP10 Missense_Mutation p.E134K 0.42 tolerated(0.32) benign(0.056) TCGA-EE-A182-06 11 10597933 10597933 C T MRVI1 Silent p.Q895Q 0.46 TCGA-EE-A182-06 11 108380663 108380663 G A EXPH5 Silent p.S1857S 0.66 TCGA-EE-A182-06 11 112042646 112042646 T C TEX12 3'UTR 0.41 TCGA-EE-A182-06 11 113860275 113860275 G A HTR3A Silent p.R447R 0.53 TCGA-EE-A182-06 11 114401355 114401355 C T NXPE1 5'UTR 0.34 TCGA-EE-A182-06 11 114453255 114453255 C T NXPE4 Silent p.R195R 0.22 TCGA-EE-A182-06 11 114453576 114453576 G A NXPE4 Silent p.F88F 0.43 TCGA-EE-A182-06 11 116662534 116662534 G A APOA5 Missense_Mutation p.L15F 0.42 tolerated(0.05) benign(0.016) TCGA-EE-A182-06 11 119983112 119983112 C T TRIM29 3'UTR 0.50 TCGA-EE-A182-06 11 121348826 121348826 G A SORL1 Splice_Site p.X135_splice 0.51 TCGA-EE-A182-06 11 121481797 121481797 C T SORL1 Missense_Mutation p.P1751L 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A182-06 11 125479396 125479396 C T STT3A Silent p.I343I 0.32 TCGA-EE-A182-06 11 132399032 132399032 C T OPCML Missense_Mutation p.G150E 0.45 deleterious(0) probably_damaging(0.962) TCGA-EE-A182-06 11 133816061 133816061 C T IGSF9B Missense_Mutation p.G53R 0.44 deleterious(0) probably_damaging(0.989) TCGA-EE-A182-06 11 30902748 30902748 C A DCDC1 Missense_Mutation p.M1727I 0.25 tolerated(0.15) benign(0.043) TCGA-EE-A182-06 11 35456111 35456111 C T PAMR1 Silent p.G542G 0.46 TCGA-EE-A182-06 11 3744453 3744453 G A NUP98 Missense_Mutation p.H694Y 0.47 tolerated(0.36) benign(0.341) TCGA-EE-A182-06 11 40136898 40136898 C T LRRC4C Nonsense_Mutation p.W315* 0.61 TCGA-EE-A182-06 11 44331188 44331188 C T ALX4 Missense_Mutation p.G142D 0.59 tolerated_low_confidence(0.14) benign(0.127) TCGA-EE-A182-06 11 44331189 44331189 C T ALX4 Missense_Mutation p.G142S 0.59 tolerated_low_confidence(0.07) benign(0.007) TCGA-EE-A182-06 11 4608150 4608150 G A OR52I2 Missense_Mutation p.M36I 0.43 tolerated(0.47) benign(0.002) TCGA-EE-A182-06 11 48286018 48286018 C T OR4X1 Silent p.G202G 0.59 TCGA-EE-A182-06 11 48346903 48346903 C T OR4C3 Silent p.I137I 0.21 TCGA-EE-A182-06 11 4976460 4976460 G A OR51A2 Missense_Mutation p.P162S 0.42 deleterious(0.02) possibly_damaging(0.77) TCGA-EE-A182-06 11 4976461 4976461 G A OR51A2 Silent p.F161F 0.42 TCGA-EE-A182-06 11 49973998 49973998 A T OR4C13 Silent p.T8T 0.43 TCGA-EE-A182-06 11 5253963 5253963 C T HBD 3'Flank 0.50 TCGA-EE-A182-06 11 5255304 5255304 G A HBD Missense_Mutation p.H78Y 0.42 deleterious(0.03) possibly_damaging(0.604) TCGA-EE-A182-06 11 5373574 5373574 C T OR51B6 Silent p.F279F 0.37 TCGA-EE-A182-06 11 5373625 5373625 G A OR51B6 Silent p.Q296Q 0.38 TCGA-EE-A182-06 11 55038509 55038509 C T TRIM48 3'UTR 0.57 TCGA-EE-A182-06 11 55135686 55135686 G A OR4A15 Missense_Mutation p.M109I 0.40 tolerated_low_confidence(0.05) benign(0.043) TCGA-EE-A182-06 11 55135906 55135906 C T OR4A15 Missense_Mutation p.H183Y 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-EE-A182-06 11 55339783 55339783 C T OR4C16 Silent p.F60F 0.45 TCGA-EE-A182-06 11 55541375 55541375 G A OR5D13 Silent p.G154G 0.46 TCGA-EE-A182-06 11 56127902 56127902 C T OR8J1 Silent p.Y60Y 0.49 TCGA-EE-A182-06 11 56128589 56128589 G A OR8J1 Silent p.L289L 0.28 TCGA-EE-A182-06 11 57426975 57426975 G A CLP1 Silent p.K9K 0.53 TCGA-EE-A182-06 11 58722338 58722338 C T GLYATL1 Silent p.I125I 0.44 TCGA-EE-A182-06 11 60615428 60615428 C T CCDC86 Missense_Mutation p.R264C 0.11 tolerated(0.07) benign(0.255) TCGA-EE-A182-06 11 61533560 61533560 C T MYRF Missense_Mutation p.P89S 0.42 tolerated(0.1) benign(0.005) TCGA-EE-A182-06 11 61957733 61957733 G A SCGB1D1 5'UTR 0.43 TCGA-EE-A182-06 11 6261650 6261650 C T CNGA4 Missense_Mutation p.P209L 0.35 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A182-06 11 63173968 63173968 G A SLC22A9 Splice_Site p.X358_splice 0.47 TCGA-EE-A182-06 11 64122705 64122705 C T CCDC88B Missense_Mutation p.S1380F 0.67 deleterious(0) probably_damaging(0.993) TCGA-EE-A182-06 11 64519471 64519471 C T PYGM Missense_Mutation p.D565N 0.43 deleterious(0) probably_damaging(0.953) TCGA-EE-A182-06 11 64526124 64526124 G A PYGM Missense_Mutation p.T99I 0.45 deleterious(0) probably_damaging(0.979) TCGA-EE-A182-06 11 64981824 64981824 C G CAPN1 3'Flank 0.33 TCGA-EE-A182-06 11 66260348 66260348 T C DPP3 Missense_Mutation p.S384P 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 11 66260349 66260349 C T DPP3 Missense_Mutation p.S384F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 11 66260350 66260350 C A DPP3 Silent p.S384S 0.41 TCGA-EE-A182-06 11 68560846 68560846 G A CPT1A Missense_Mutation p.P302S 0.57 deleterious(0) probably_damaging(0.993) TCGA-EE-A182-06 11 68704194 68704194 C T IGHMBP2 Missense_Mutation p.S749F 0.49 deleterious(0.02) benign(0.33) TCGA-EE-A182-06 11 71906375 71906375 G A FOLR1 Missense_Mutation p.D77N 0.38 deleterious(0.04) benign(0.071) TCGA-EE-A182-06 11 73130926 73130926 C T FAM168A Silent p.A90A 0.41 TCGA-EE-A182-06 11 7818017 7818017 G A OR5P2 Missense_Mutation p.S158F 0.50 tolerated(0.08) benign(0.022) TCGA-EE-A182-06 11 7960409 7960409 C T OR10A3 Missense_Mutation p.R220Q 0.45 tolerated(0.09) benign(0.027) TCGA-EE-A182-06 11 85347020 85347020 T C TMEM126B Intron 0.33 TCGA-EE-A182-06 11 85396579 85396579 G A CCDC89 Nonsense_Mutation p.Q199* 0.44 TCGA-EE-A182-06 11 85606383 85606383 G A CCDC83 Missense_Mutation p.E187K 0.43 tolerated(0.34) benign(0.015) TCGA-EE-A182-06 11 92088481 92088481 G A FAT3 Missense_Mutation p.R1068Q 0.43 benign(0.009) TCGA-EE-A182-06 11 93170756 93170756 C T CCDC67 Silent p.F562F 0.54 TCGA-EE-A182-06 11 93845097 93845097 C G HEPHL1 3'UTR 0.43 TCGA-EE-A182-06 11 94352941 94352941 G A PIWIL4 Silent p.V728V 0.57 TCGA-EE-A182-06 12 100813679 100813679 G A SLC17A8 Silent p.G504G 0.29 TCGA-EE-A182-06 12 100813733 100813733 C T SLC17A8 Silent p.I522I 0.30 TCGA-EE-A182-06 12 101381320 101381320 C T ANO4 Silent p.I167I 0.31 TCGA-EE-A182-06 12 10151874 10151874 T G CLEC1B 5'UTR 0.31 TCGA-EE-A182-06 12 101550904 101550904 T A SLC5A8 3'UTR 0.40 TCGA-EE-A182-06 12 101581202 101581202 C T SLC5A8 Missense_Mutation p.D309N 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 102811506 102811506 C T IGF1 3'UTR 0.22 TCGA-EE-A182-06 12 104118760 104118760 G A STAB2 Missense_Mutation p.G1564D 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 10460655 10460655 C T KLRD1 5'UTR 0.30 TCGA-EE-A182-06 12 10532318 10532318 C T KLRK1 Nonsense_Mutation p.W74* 0.22 TCGA-EE-A182-06 12 108985963 108985963 G A TMEM119 Missense_Mutation p.S66L 0.25 tolerated(0.12) benign(0.014) TCGA-EE-A182-06 12 110252501 110252501 G A TRPV4 Missense_Mutation p.S34F 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A182-06 12 113321148 113321148 G A RPH3A Nonsense_Mutation p.W459* 0.21 TCGA-EE-A182-06 12 11420803 11420803 C T PRB3 Missense_Mutation p.G127E 0.31 tolerated(0.16) unknown(0) TCGA-EE-A182-06 12 117627100 117627100 G A FBXO21 Missense_Mutation p.R103W 0.28 deleterious(0) possibly_damaging(0.847) TCGA-EE-A182-06 12 117768438 117768438 G A NOS1 Missense_Mutation p.P146L 0.29 tolerated_low_confidence(0.48) benign(0) TCGA-EE-A182-06 12 119978481 119978481 G A CCDC60 Silent p.R538R 0.17 TCGA-EE-A182-06 12 121177141 121177141 C G ACADS Missense_Mutation p.P377A 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A182-06 12 121416631 121416631 G A HNF1A Silent p.G20G 0.29 TCGA-EE-A182-06 12 121458471 121458471 C T OASL Missense_Mutation p.G480S 0.28 tolerated(0.32) possibly_damaging(0.744) TCGA-EE-A182-06 12 124139515 124139515 C T GTF2H3 Silent p.F177F 0.24 TCGA-EE-A182-06 12 124221681 124221681 C T ATP6V0A2 Nonsense_Mutation p.Q301* 0.33 TCGA-EE-A182-06 12 124824657 124824657 G A NCOR2 Missense_Mutation p.S1861F 0.35 probably_damaging(0.996) TCGA-EE-A182-06 12 124824947 124824947 G A NCOR2 Missense_Mutation p.S1794F 0.31 possibly_damaging(0.706) TCGA-EE-A182-06 12 126128809 126128809 C A TMEM132B Missense_Mutation p.P537Q 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 12874125 12874125 T C CDKN1B 3'UTR 0.39 TCGA-EE-A182-06 12 133732654 133732654 C T ZNF10 Silent p.F274F 0.30 TCGA-EE-A182-06 12 14827637 14827637 G A GUCY2C Silent p.L336L 0.34 TCGA-EE-A182-06 12 18876251 18876251 C T PLCZ1 Missense_Mutation p.E121K 0.20 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A182-06 12 18891712 18891712 G A CAPZA3 Nonsense_Mutation p.W170* 0.28 TCGA-EE-A182-06 12 1940547 1940547 C T LRTM2 Missense_Mutation p.R172C 0.27 deleterious(0.02) benign(0.002) TCGA-EE-A182-06 12 20803400 20803400 G A PDE3A Missense_Mutation p.D931N 0.27 deleterious(0) possibly_damaging(0.579) TCGA-EE-A182-06 12 2693743 2693743 A T CACNA1C Nonsense_Mutation p.K767* 0.20 TCGA-EE-A182-06 12 27132786 27132786 T G TM7SF3 Missense_Mutation p.I374L 0.30 tolerated(1) benign(0.001) TCGA-EE-A182-06 12 300179 300179 G A SLC6A12 3'UTR 0.20 TCGA-EE-A182-06 12 33532878 33532878 G A SYT10 Silent p.V463V 0.26 TCGA-EE-A182-06 12 33560282 33560282 G A SYT10 Silent p.S173S 0.28 TCGA-EE-A182-06 12 39703441 39703441 A G KIF21A Silent p.S1408S 0.27 TCGA-EE-A182-06 12 39997802 39997802 A G ABCD2 Missense_Mutation p.V471A 0.34 deleterious(0.02) benign(0.066) TCGA-EE-A182-06 12 39998563 39998563 C T ABCD2 Splice_Site p.X469_splice 0.33 TCGA-EE-A182-06 12 43777456 43777456 C T ADAMTS20 Missense_Mutation p.E1568K 0.36 tolerated(0.13) possibly_damaging(0.562) TCGA-EE-A182-06 12 43826249 43826249 C T ADAMTS20 Missense_Mutation p.G985E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 46298784 46298784 C T ARID2 Missense_Mutation p.L1811F 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 12 47472390 47472390 C T AMIGO2 Silent p.V132V 0.33 TCGA-EE-A182-06 12 47629749 47629749 C T PCED1B Silent p.P301P 0.25 TCGA-EE-A182-06 12 4853838 4853838 G A GALNT8 Missense_Mutation p.D278N 0.27 deleterious(0.01) possibly_damaging(0.585) TCGA-EE-A182-06 12 49717983 49717983 C T TROAP Intron 0.27 TCGA-EE-A182-06 12 50045760 50045760 G A FMNL3 Missense_Mutation p.P520L 0.33 tolerated(0.17) probably_damaging(0.996) TCGA-EE-A182-06 12 50187179 50187179 G A NCKAP5L Missense_Mutation p.S1099L 0.31 deleterious(0.03) benign(0.006) TCGA-EE-A182-06 12 50348455 50348455 G A AQP2 Missense_Mutation p.A190T 0.28 deleterious(0.02) benign(0.042) TCGA-EE-A182-06 12 50349313 50349313 G A AQP2 Nonsense_Mutation p.W246* 0.48 TCGA-EE-A182-06 12 50571483 50571496 CCCTTCCTCCAAGG - LIMA1 Frame_Shift_Del p.A545Dfs*11 0.28 TCGA-EE-A182-06 12 51857462 51857462 G A SLC4A8 Missense_Mutation p.G438E 0.19 tolerated(0.66) benign(0.003) TCGA-EE-A182-06 12 52567548 52567548 C T KRT80 Missense_Mutation p.E223K 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 53070165 53070165 C T KRT1 Missense_Mutation p.D457N 0.31 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A182-06 12 54796786 54796786 G A ITGA5 Silent p.L655L 0.36 TCGA-EE-A182-06 12 55356606 55356606 G A TESPA1 Missense_Mutation p.P359L 0.11 deleterious_low_confidence(0.05) benign(0.052) TCGA-EE-A182-06 12 55945204 55945204 C T OR6C4 Missense_Mutation p.S65F 0.35 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-EE-A182-06 12 56527952 56527954 CTC TT ESYT1 Frame_Shift_Del p.T521Ifs*35 0.24 TCGA-EE-A182-06 12 56666955 56666955 C T CS Nonsense_Mutation p.W438* 0.38 TCGA-EE-A182-06 12 57573329 57573329 C T LRP1 Silent p.V1652V 0.24 TCGA-EE-A182-06 12 57869688 57869688 G T ARHGAP9 Missense_Mutation p.F413L 0.34 tolerated(0.25) benign(0.037) TCGA-EE-A182-06 12 58197420 58197420 C T AVIL Silent p.K568K 0.26 TCGA-EE-A182-06 12 6030408 6030408 C T ANO2 Missense_Mutation p.G107E 0.26 tolerated(0.21) possibly_damaging(0.471) TCGA-EE-A182-06 12 62103978 62103978 C T FAM19A2 3'UTR 0.38 TCGA-EE-A182-06 12 63541150 63541150 C T AVPR1A Missense_Mutation p.V416I 0.26 tolerated_low_confidence(0.61) benign(0.012) TCGA-EE-A182-06 12 6438439 6438439 C T TNFRSF1A 3'UTR 0.11 TCGA-EE-A182-06 12 64472794 64472794 C T SRGAP1 Silent p.S407S 0.33 TCGA-EE-A182-06 12 64825499 64825499 C T XPOT Missense_Mutation p.L720F 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 12 64849723 64849723 C T TBK1 Missense_Mutation p.R25C 0.33 deleterious(0) probably_damaging(0.961) TCGA-EE-A182-06 12 6687654 6687654 G A CHD4 Silent p.P1680P 0.42 TCGA-EE-A182-06 12 6687655 6687655 G A CHD4 Missense_Mutation p.P1680L 0.42 tolerated(0.18) benign(0) TCGA-EE-A182-06 12 70049370 70049370 T A BEST3 Missense_Mutation p.N442Y 0.29 deleterious(0.01) benign(0.332) TCGA-EE-A182-06 12 70980852 70980852 T A PTPRB Missense_Mutation p.Y749F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 12 7187929 7187929 G A C1R Silent p.S623S 0.32 TCGA-EE-A182-06 12 72936102 72936102 T A TRHDE Missense_Mutation p.F540Y 0.26 deleterious(0.03) possibly_damaging(0.574) TCGA-EE-A182-06 12 73012798 73012798 G A TRHDE Missense_Mutation p.E772K 0.16 tolerated(0.06) possibly_damaging(0.63) TCGA-EE-A182-06 12 73015526 73015526 G A TRHDE Silent p.R845R 0.36 TCGA-EE-A182-06 12 7469819 7469819 C T ACSM4 Missense_Mutation p.P236L 0.40 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 12 7635337 7635337 G A CD163 Missense_Mutation p.S1050F 0.41 tolerated(0.73) benign(0.004) TCGA-EE-A182-06 12 7639223 7639223 C T CD163 Missense_Mutation p.G777E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 76740304 76740304 T C BBS10 Silent p.L487L 0.28 TCGA-EE-A182-06 12 7883451 7883451 G A CLEC4C Missense_Mutation p.P147S 0.25 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A182-06 12 81741409 81741409 G A PPFIA2 Missense_Mutation p.S712L 0.32 tolerated(0.15) possibly_damaging(0.852) TCGA-EE-A182-06 12 8376706 8376706 C T FAM90A1 Missense_Mutation p.E77K 0.31 tolerated(1) benign(0.091) TCGA-EE-A182-06 12 85450336 85450336 G A LRRIQ1 Missense_Mutation p.E589K 0.21 tolerated(0.11) benign(0.047) TCGA-EE-A182-06 12 86373909 86373909 G A MGAT4C Missense_Mutation p.R199C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 12 86374166 86374166 C T MGAT4C Missense_Mutation p.G113E 0.40 tolerated(0.24) possibly_damaging(0.717) TCGA-EE-A182-06 12 91348214 91348214 G A CCER1 Silent p.F102F 0.34 TCGA-EE-A182-06 12 92537991 92537991 G A BTG1 Silent p.A127A 0.28 TCGA-EE-A182-06 12 95228418 95228418 G A MIR492 3'Flank 0.37 TCGA-EE-A182-06 12 96641178 96641178 C T ELK3 Missense_Mutation p.S223F 0.29 tolerated(0.1) probably_damaging(0.993) TCGA-EE-A182-06 12 96641179 96641179 C A ELK3 Silent p.S223S 0.29 TCGA-EE-A182-06 12 97147538 97147538 C G C12orf55 Missense_Mutation p.Q2568E 0.18 tolerated(0.34) benign(0.001) TCGA-EE-A182-06 12 97150267 97150267 G A C12orf55 Silent p.E2624E 0.17 TCGA-EE-A182-06 12 99106141 99106141 T C APAF1 Silent p.A962A 0.26 TCGA-EE-A182-06 12 99548100 99548100 C T ANKS1B Silent p.L831L 0.26 TCGA-EE-A182-06 13 100190108 100190108 A G TM9SF2 Missense_Mutation p.E236G 0.22 tolerated(0.12) possibly_damaging(0.515) TCGA-EE-A182-06 13 100190110 100190110 C T TM9SF2 Missense_Mutation p.P237S 0.19 deleterious(0.04) possibly_damaging(0.687) TCGA-EE-A182-06 13 100190111 100190111 C T TM9SF2 Missense_Mutation p.P237L 0.20 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A182-06 13 103698508 103698508 C T SLC10A2 Missense_Mutation p.G341E 0.21 tolerated(0.51) benign(0.002) TCGA-EE-A182-06 13 103703631 103703631 C T SLC10A2 Missense_Mutation p.R246K 0.30 tolerated(0.29) benign(0.015) TCGA-EE-A182-06 13 103703705 103703705 G A SLC10A2 Silent p.I221I 0.30 TCGA-EE-A182-06 13 108861588 108861588 C T LIG4 Missense_Mutation p.D677N 0.35 deleterious(0.02) benign(0.004) TCGA-EE-A182-06 13 109445940 109445940 A T MYO16 Missense_Mutation p.L209F 0.28 deleterious(0) probably_damaging(0.952) TCGA-EE-A182-06 13 111156235 111156235 C T COL4A2 Missense_Mutation p.P1394S 0.29 possibly_damaging(0.876) TCGA-EE-A182-06 13 113835476 113835476 G A PCID2 Silent p.L306L 0.15 TCGA-EE-A182-06 13 113838775 113838775 G A PCID2 Silent p.P244P 0.28 TCGA-EE-A182-06 13 22096766 22096766 G A MICU2 Missense_Mutation p.L164F 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 13 25029162 25029162 G A PARP4 Silent p.F917F 0.25 TCGA-EE-A182-06 13 27256917 27256917 C T WASF3 Missense_Mutation p.P386L 0.23 tolerated(0.33) possibly_damaging(0.462) TCGA-EE-A182-06 13 28896933 28896933 C A FLT1 Nonsense_Mutation p.E983* 0.27 TCGA-EE-A182-06 13 30075288 30075288 G A MTUS2 Missense_Mutation p.E1295K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 13 30091756 30091756 A G SLC7A1 Silent p.P488P 0.27 TCGA-EE-A182-06 13 31338126 31338126 C T ALOX5AP Silent p.F123F 0.29 TCGA-EE-A182-06 13 32332520 32332520 G A RXFP2 Missense_Mutation p.G74R 0.27 tolerated(0.1) possibly_damaging(0.48) TCGA-EE-A182-06 13 33635583 33635583 C T KL Silent p.F789F 0.18 TCGA-EE-A182-06 13 33638239 33638239 C T KL Silent p.F985F 0.37 TCGA-EE-A182-06 13 33700223 33700223 C T STARD13 Missense_Mutation p.D693N 0.34 deleterious(0) possibly_damaging(0.881) TCGA-EE-A182-06 13 38320349 38320349 G A TRPC4 Missense_Mutation p.L208F 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 13 46287907 46287907 C T SPERT Silent p.L249L 0.24 TCGA-EE-A182-06 13 46287908 46287908 C T SPERT Missense_Mutation p.L250F 0.24 tolerated(0.13) probably_damaging(0.929) TCGA-EE-A182-06 13 73636401 73636401 C T KLF5 Missense_Mutation p.P222S 0.33 tolerated(0.91) benign(0.043) TCGA-EE-A182-06 13 73636402 73636402 C T KLF5 Missense_Mutation p.P222L 0.32 tolerated(0.13) benign(0.043) TCGA-EE-A182-06 13 76101961 76101961 G A COMMD6 Silent p.L78L 0.19 TCGA-EE-A182-06 13 77651477 77651477 G A MYCBP2 Missense_Mutation p.P3806S 0.31 probably_damaging(0.99) TCGA-EE-A182-06 13 92560288 92560288 G A GPC5 Missense_Mutation p.D460N 0.18 deleterious(0.04) probably_damaging(1) TCGA-EE-A182-06 13 99047564 99047564 G A FARP1 Silent p.K416K 0.39 TCGA-EE-A182-06 13 99047565 99047565 G A FARP1 Missense_Mutation p.V417I 0.39 tolerated(0.43) benign(0) TCGA-EE-A182-06 14 100743941 100743941 G A YY1 3'UTR 0.25 TCGA-EE-A182-06 14 100743942 100743942 A T YY1 3'UTR 0.25 TCGA-EE-A182-06 14 100793639 100793639 G C SLC25A47 Missense_Mutation p.G87R 0.31 tolerated(0.15) possibly_damaging(0.619) TCGA-EE-A182-06 14 100795794 100795794 G A SLC25A47 Missense_Mutation p.A247T 0.29 tolerated(0.15) benign(0.124) TCGA-EE-A182-06 14 102881014 102881014 C T TECPR2 Silent p.S174S 0.36 TCGA-EE-A182-06 14 103363719 103363719 C T TRAF3 Missense_Mutation p.S314F 0.24 deleterious(0.02) possibly_damaging(0.519) TCGA-EE-A182-06 14 106173899 106173899 C T IGHA1 Missense_Mutation p.G223E 0.14 tolerated(1) benign(0.039) TCGA-EE-A182-06 14 106320619 106320619 G A IGHM Silent p.I397I 0.33 TCGA-EE-A182-06 14 106691775 106691775 C T IGHV3-21 Silent p.V83V 0.24 TCGA-EE-A182-06 14 106805624 106805624 G A IGHV4-31 Silent p.F7F 0.11 TCGA-EE-A182-06 14 106829737 106829737 C T IGHV4-34 Missense_Mutation p.E76K 0.28 tolerated(0.32) benign(0.003) TCGA-EE-A182-06 14 106963192 106963192 C T IGHV1-45 Silent p.V30V 0.25 TCGA-EE-A182-06 14 19553712 19553712 G T POTEG Missense_Mutation p.G99V 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-EE-A182-06 14 20019973 20019973 G A POTEM Missense_Mutation p.S83F 0.12 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A182-06 14 20249039 20249039 G A OR4M1 Silent p.R186R 0.28 TCGA-EE-A182-06 14 20344609 20344609 C T OR4K2 Silent p.F61F 0.33 TCGA-EE-A182-06 14 20388785 20388785 C T OR4K5 Missense_Mutation p.S7L 0.23 deleterious(0.01) benign(0.03) TCGA-EE-A182-06 14 20389067 20389067 T C OR4K5 Missense_Mutation p.I101T 0.26 deleterious(0) possibly_damaging(0.881) TCGA-EE-A182-06 14 20404752 20404752 G A OR4K1 Nonsense_Mutation p.W309* 0.28 TCGA-EE-A182-06 14 20482700 20482700 G A OR4K14 Missense_Mutation p.S218F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 14 20528394 20528394 G A OR4L1 Missense_Mutation p.G64E 0.19 deleterious(0) probably_damaging(0.924) TCGA-EE-A182-06 14 21216049 21216049 G A EDDM3A Missense_Mutation p.E104K 0.24 tolerated(1) benign(0) TCGA-EE-A182-06 14 21216051 21216051 G A EDDM3A Silent p.E104E 0.25 TCGA-EE-A182-06 14 22102351 22102351 G A OR10G2 Silent p.F216F 0.36 TCGA-EE-A182-06 14 22102994 22102994 C T OR10G2 Missense_Mutation p.G2E 0.24 tolerated(0.58) benign(0.002) TCGA-EE-A182-06 14 22134151 22134151 C T OR4E2 Silent p.F285F 0.12 TCGA-EE-A182-06 14 23392336 23392336 G A PRMT5 Missense_Mutation p.S470F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 14 23511897 23511897 C T PSMB11 Missense_Mutation p.R155C 0.24 deleterious(0.04) benign(0.027) TCGA-EE-A182-06 14 23886452 23886452 G A MYH7 Missense_Mutation p.L1477F 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A182-06 14 24542791 24542791 G A CPNE6 Silent p.K84K 0.28 TCGA-EE-A182-06 14 24651015 24651015 G A IPO4 Missense_Mutation p.L948F 0.26 deleterious(0.03) possibly_damaging(0.908) TCGA-EE-A182-06 14 24879253 24879254 CC T NYNRIN Frame_Shift_Del p.P752Qfs*14 0.29 TCGA-EE-A182-06 14 26917978 26917978 G A NOVA1 Silent p.I237I 0.41 TCGA-EE-A182-06 14 33293838 33293838 C T AKAP6 Silent p.A2273A 0.25 TCGA-EE-A182-06 14 36197713 36197713 A G RALGAPA1 Missense_Mutation p.F531L 0.27 deleterious(0.03) possibly_damaging(0.493) TCGA-EE-A182-06 14 45686323 45686323 G A MIS18BP1 Missense_Mutation p.L968F 0.29 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A182-06 14 47426821 47426821 G A MDGA2 Silent p.F615F 0.23 TCGA-EE-A182-06 14 51467457 51467457 C T TRIM9 Missense_Mutation p.V470M 0.27 tolerated(0.08) possibly_damaging(0.579) TCGA-EE-A182-06 14 57271053 57271053 G A OTX2 Silent p.T42T 0.36 TCGA-EE-A182-06 14 60212694 60212694 G A RTN1 Silent p.I249I 0.33 TCGA-EE-A182-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.23 TCGA-EE-A182-06 14 63473177 63473177 C T KCNH5 Missense_Mutation p.E71K 0.15 deleterious(0.03) benign(0.418) TCGA-EE-A182-06 14 65054985 65054985 G A PPP1R36 Missense_Mutation p.G352R 0.36 tolerated(0.47) benign(0.05) TCGA-EE-A182-06 14 65239538 65239538 C T SPTB Nonsense_Mutation p.W1771* 0.34 TCGA-EE-A182-06 14 65261206 65261206 G A SPTB Silent p.L592L 0.31 TCGA-EE-A182-06 14 67579811 67579811 C T GPHN Missense_Mutation p.L517F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 14 70713324 70713324 C T ADAM21P1 RNA 0.19 TCGA-EE-A182-06 14 71568710 71568710 C T PCNX Missense_Mutation p.H1865Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 14 72925077 72925077 C T RGS6 Missense_Mutation p.R112C 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 14 73989321 73989321 G A HEATR4 Missense_Mutation p.P179L 0.23 tolerated(0.61) benign(0.004) TCGA-EE-A182-06 14 74388824 74388824 C T ZNF410 Silent p.N412N 0.26 TCGA-EE-A182-06 14 74824771 74824771 C T VRTN Missense_Mutation p.P429S 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 14 77948818 77948818 C T ISM2 Missense_Mutation p.D274N 0.32 tolerated(0.11) benign(0.157) TCGA-EE-A182-06 14 90651053 90651053 G A KCNK13 Silent p.R311R 0.35 TCGA-EE-A182-06 14 91161911 91161911 C T TTC7B Missense_Mutation p.R237K 0.29 tolerated(1) benign(0.01) TCGA-EE-A182-06 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.41 TCGA-EE-A182-06 14 94909132 94909132 C T SERPINA11 Silent p.A360A 0.18 TCGA-EE-A182-06 14 95108045 95108045 C T SERPINA13P RNA 0.26 TCGA-EE-A182-06 14 96707205 96707205 G A BDKRB2 Silent p.V180V 0.31 TCGA-EE-A182-06 15 101109545 101109545 G A LINS Silent p.C724C 0.30 TCGA-EE-A182-06 15 101718386 101718386 G A CHSY1 Missense_Mutation p.P539L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 15 102292671 102292671 C T DNM1P47 Intron 0.18 TCGA-EE-A182-06 15 20496664 20496664 C T CHEK2P2 RNA 0.06 TCGA-EE-A182-06 15 22960866 22960866 C T CYFIP1 Silent p.L687L 0.33 TCGA-EE-A182-06 15 23811001 23811001 G A MKRN3 Silent p.R24R 0.39 TCGA-EE-A182-06 15 23932279 23932279 G A NDN Missense_Mutation p.S29L 0.30 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A182-06 15 24923034 24923034 C T NPAP1 Missense_Mutation p.P674S 0.34 tolerated(0.87) benign(0) TCGA-EE-A182-06 15 25213205 25213205 G A SNRPN 5'UTR 0.31 TCGA-EE-A182-06 15 25296652 25296652 A G SNORD116-1 RNA 0.28 TCGA-EE-A182-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.33 TCGA-EE-A182-06 15 25427460 25427460 C T SNORD115-6 3'Flank 0.26 TCGA-EE-A182-06 15 25427583 25427583 C T SNORD115-6 3'Flank 0.28 TCGA-EE-A182-06 15 25438495 25438495 C T SNORD115-11 3'Flank 0.27 TCGA-EE-A182-06 15 28447305 28447305 G A HERC2 Missense_Mutation p.S2524F 0.34 possibly_damaging(0.85) TCGA-EE-A182-06 15 28929412 28929412 A G RP11-578F21.2 5'Flank 0.13 TCGA-EE-A182-06 15 33873807 33873807 C T RYR3 Silent p.A512A 0.25 TCGA-EE-A182-06 15 35045173 35045173 C T GJD2 Missense_Mutation p.E158K 0.34 tolerated(0.22) benign(0.114) TCGA-EE-A182-06 15 39885299 39885299 G A THBS1 Missense_Mutation p.D956N 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 15 40655877 40655877 C T DISP2 Silent p.S57S 0.37 TCGA-EE-A182-06 15 40655878 40655878 C T DISP2 Missense_Mutation p.L58F 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-EE-A182-06 15 41377662 41377662 G A INO80 Missense_Mutation p.P260S 0.39 tolerated(0.86) benign(0.053) TCGA-EE-A182-06 15 42437981 42437981 C T PLA2G4F Missense_Mutation p.R552Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A182-06 15 42470453 42470453 A G VPS39 Missense_Mutation p.L308P 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A182-06 15 43045324 43045324 G A TTBK2 Missense_Mutation p.P707L 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A182-06 15 43577113 43577113 G A TGM7 Silent p.S301S 0.30 TCGA-EE-A182-06 15 45050909 45050909 G A TRIM69 Missense_Mutation p.E224K 0.16 tolerated(0.1) benign(0.025) TCGA-EE-A182-06 15 45398008 45398008 C T DUOX2 Missense_Mutation p.E723K 0.22 tolerated(0.06) benign(0.242) TCGA-EE-A182-06 15 45567851 45567851 G A SLC28A2 3'UTR 0.35 TCGA-EE-A182-06 15 48451941 48451941 C T MYEF2 Missense_Mutation p.G196R 0.29 tolerated(0.12) possibly_damaging(0.675) TCGA-EE-A182-06 15 50209220 50209220 G A ATP8B4 Silent p.I684I 0.25 TCGA-EE-A182-06 15 51696816 51696816 C G GLDN Missense_Mutation p.N507K 0.34 tolerated(0.11) benign(0.098) TCGA-EE-A182-06 15 52892394 52892394 A C FAM214A Missense_Mutation p.I860S 0.29 tolerated(0.72) benign(0.007) TCGA-EE-A182-06 15 54003658 54003658 A T WDR72 Missense_Mutation p.F244L 0.24 deleterious(0.01) benign(0.32) TCGA-EE-A182-06 15 54306661 54306661 G A UNC13C Missense_Mutation p.E521K 0.30 tolerated_low_confidence(0.1) benign(0.002) TCGA-EE-A182-06 15 54307826 54307826 C T UNC13C Missense_Mutation p.S909L 0.24 tolerated_low_confidence(0.69) benign(0.001) TCGA-EE-A182-06 15 54614145 54614145 C T UNC13C Missense_Mutation p.S1426L 0.44 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-EE-A182-06 15 54916041 54916041 C T UNC13C Missense_Mutation p.P2083L 0.29 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A182-06 15 60653147 60653147 G A ANXA2 Missense_Mutation p.S135F 0.20 deleterious(0.03) possibly_damaging(0.5) TCGA-EE-A182-06 15 63349295 63349295 A T TPM1 Nonsense_Mutation p.K118* 0.30 TCGA-EE-A182-06 15 63948490 63948490 G A HERC1 Nonsense_Mutation p.R3223* 0.23 TCGA-EE-A182-06 15 65112122 65112122 C A PIF1 Silent p.G419G 0.37 TCGA-EE-A182-06 15 65916334 65916334 C T SLC24A1 5'UTR 0.24 TCGA-EE-A182-06 15 66048611 66048611 G A DENND4A Missense_Mutation p.P60S 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 15 66048612 66048612 G A DENND4A Silent p.V59V 0.50 TCGA-EE-A182-06 15 71305224 71305224 C T LRRC49 Missense_Mutation p.R564C 0.23 deleterious(0) probably_damaging(0.985) TCGA-EE-A182-06 15 72020948 72020948 G A THSD4 Missense_Mutation p.G473E 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 15 72195386 72195386 G A MYO9A Missense_Mutation p.H966Y 0.27 tolerated(0.07) benign(0.005) TCGA-EE-A182-06 15 72699072 72699072 C T TMEM202 Missense_Mutation p.S156F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 15 72699073 72699073 C T TMEM202 Silent p.S156S 0.29 TCGA-EE-A182-06 15 74473253 74473253 C T STRA6 Silent p.L609L 0.26 TCGA-EE-A182-06 15 75311354 75311354 G A SCAMP5 3'UTR 0.15 TCGA-EE-A182-06 15 76584828 76584828 T C ETFA Missense_Mutation p.T99A 0.33 tolerated(0.51) benign(0.011) TCGA-EE-A182-06 15 77472206 77472206 G A PEAK1 Missense_Mutation p.T688I 0.23 deleterious(0) benign(0.004) TCGA-EE-A182-06 15 78219146 78219146 G A RP11-114H24.7 3'Flank 0.22 TCGA-EE-A182-06 15 78780998 78780998 C T IREB2 Missense_Mutation p.P654L 0.38 tolerated(0.14) benign(0.008) TCGA-EE-A182-06 15 79614517 79614517 C T TMED3 Silent p.F205F 0.35 TCGA-EE-A182-06 15 83933428 83933428 G A BNC1 Missense_Mutation p.S192F 0.24 deleterious(0) possibly_damaging(0.534) TCGA-EE-A182-06 15 85326896 85326896 G A ZNF592 Silent p.K330K 0.25 TCGA-EE-A182-06 15 88678469 88678469 C T NTRK3 Missense_Mutation p.G356E 0.30 tolerated(0.24) benign(0.158) TCGA-EE-A182-06 15 89870213 89870213 C T POLG Silent p.K505K 0.30 TCGA-EE-A182-06 15 91517854 91517854 C T PRC1 Silent p.E437E 0.29 TCGA-EE-A182-06 15 94911016 94911016 G A MCTP2 Missense_Mutation p.R495Q 0.32 deleterious(0.03) possibly_damaging(0.475) TCGA-EE-A182-06 15 94945245 94945245 C T MCTP2 Silent p.F694F 0.22 TCGA-EE-A182-06 15 99023990 99023990 T C FAM169B Missense_Mutation p.E8G 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 15 99670160 99670160 C T SYNM Missense_Mutation p.S531F 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 16 1004443 1004443 G A LMF1 Silent p.F139F 0.33 TCGA-EE-A182-06 16 112888 112888 G A RHBDF1 Missense_Mutation p.S227F 0.35 deleterious(0.01) possibly_damaging(0.701) TCGA-EE-A182-06 16 1258083 1258083 C T CACNA1H Silent p.P1075P 0.55 TCGA-EE-A182-06 16 1265266 1265266 C T CACNA1H Silent p.I1688I 0.41 TCGA-EE-A182-06 16 1498401 1498401 G A CLCN7 Silent p.S656S 0.33 TCGA-EE-A182-06 16 2050130 2050130 G A ZNF598 Missense_Mutation p.P474S 0.50 benign(0.053) TCGA-EE-A182-06 16 2050131 2050131 G A ZNF598 Silent p.I473I 0.48 TCGA-EE-A182-06 16 20559389 20559389 C T ACSM2B Missense_Mutation p.E365K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 16 20696586 20696586 C T ACSM1 Missense_Mutation p.G111E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 16 21069505 21069505 G A DNAH3 Missense_Mutation p.H1276Y 0.24 deleterious(0.01) benign(0.008) TCGA-EE-A182-06 16 2169146 2169146 T A PKD1 Missense_Mutation p.I110L 0.27 benign(0.008) TCGA-EE-A182-06 16 2229903 2229903 C T CASKIN1 Missense_Mutation p.E1156K 0.21 benign(0.271) TCGA-EE-A182-06 16 23226757 23226757 G A SCNN1G Silent p.Q639Q 0.27 TCGA-EE-A182-06 16 24372881 24372881 C T CACNG3 Silent p.F215F 0.24 TCGA-EE-A182-06 16 26147546 26147546 G A HS3ST4 Missense_Mutation p.E450K 0.22 deleterious(0) probably_damaging(0.979) TCGA-EE-A182-06 16 2812251 2812251 T C SRRM2 Silent p.R574R 0.44 TCGA-EE-A182-06 16 28331844 28331844 C T SBK1 Nonsense_Mutation p.Q293* 0.32 TCGA-EE-A182-06 16 29816160 29816160 C T KIF22 Missense_Mutation p.P568L 0.30 tolerated(0.09) benign(0.034) TCGA-EE-A182-06 16 29883583 29883583 G A SEZ6L2 Silent p.F876F 0.39 TCGA-EE-A182-06 16 29990326 29990326 C T TAOK2 Silent p.I128I 0.22 TCGA-EE-A182-06 16 3021895 3021895 C T PAQR4 Silent p.A256A 0.20 TCGA-EE-A182-06 16 30392507 30392507 G T SEPT1 Missense_Mutation p.P172T 0.26 probably_damaging(0.999) TCGA-EE-A182-06 16 3786779 3786779 C T CREBBP Missense_Mutation p.E1478K 0.43 unknown(0) TCGA-EE-A182-06 16 4504910 4504910 T G DNAJA3 Missense_Mutation p.S480A 0.27 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-EE-A182-06 16 46715405 46715406 GG - VPS35 Frame_Shift_Del p.A69Dfs*3 0.11 TCGA-EE-A182-06 16 47621611 47621611 C T PHKB Silent p.L269L 0.22 TCGA-EE-A182-06 16 48119526 48119526 C T ABCC12 Missense_Mutation p.R1269Q 0.16 deleterious(0) probably_damaging(0.987) TCGA-EE-A182-06 16 50339454 50339454 G A ADCY7 Missense_Mutation p.D546N 0.29 tolerated(0.7) benign(0.027) TCGA-EE-A182-06 16 50707821 50707821 G A SNX20 Silent p.F149F 0.44 TCGA-EE-A182-06 16 51173406 51173406 C T SALL1 Missense_Mutation p.M909I 0.35 tolerated(0.18) benign(0.001) TCGA-EE-A182-06 16 51174183 51174183 G A SALL1 Silent p.G650G 0.27 TCGA-EE-A182-06 16 51174819 51174819 C T SALL1 Silent p.A438A 0.22 TCGA-EE-A182-06 16 51175907 51175907 C T SALL1 Missense_Mutation p.E76K 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A182-06 16 55806417 55806417 G A CES1P1 RNA 0.28 TCGA-EE-A182-06 16 56519580 56519580 G A BBS2 Missense_Mutation p.R661C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 16 56928554 56928554 C T SLC12A3 Missense_Mutation p.A887V 0.27 tolerated(0.22) benign(0.031) TCGA-EE-A182-06 16 57070087 57070087 G A NLRC5 Silent p.R901R 0.35 TCGA-EE-A182-06 16 57101722 57101722 C T NLRC5 Missense_Mutation p.S1494F 0.34 tolerated(0.05) possibly_damaging(0.635) TCGA-EE-A182-06 16 57775705 57775705 C T KATNB1 Silent p.S49S 0.20 TCGA-EE-A182-06 16 61747794 61747794 G A CDH8 Silent p.L535L 0.19 TCGA-EE-A182-06 16 66942242 66942242 G A CDH16 3'UTR 0.27 TCGA-EE-A182-06 16 66957471 66957471 G A RRAD Silent p.I199I 0.34 TCGA-EE-A182-06 16 67289037 67289037 C T SLC9A5 Missense_Mutation p.L202F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 16 67304790 67304790 G A SLC9A5 Missense_Mutation p.G790S 0.28 tolerated_low_confidence(0.1) benign(0.018) TCGA-EE-A182-06 16 67337091 67337091 C T KCTD19 Missense_Mutation p.V201M 0.27 tolerated(0.14) benign(0.019) TCGA-EE-A182-06 16 682864 682864 C T WFIKKN1 Missense_Mutation p.L152F 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 16 69965095 69965095 C T WWP2 Missense_Mutation p.R496W 0.29 deleterious(0) probably_damaging(0.939) TCGA-EE-A182-06 16 70889137 70889137 C T HYDIN Missense_Mutation p.E4113K 0.25 possibly_damaging(0.801) TCGA-EE-A182-06 16 70908799 70908799 C T HYDIN Silent p.E3527E 0.35 TCGA-EE-A182-06 16 70954575 70954575 G A HYDIN Silent p.F2568F 0.33 TCGA-EE-A182-06 16 70955099 70955099 C T HYDIN Missense_Mutation p.D2394N 0.24 benign(0.083) TCGA-EE-A182-06 16 72130758 72130758 C T DHX38 Missense_Mutation p.P121S 0.23 tolerated(0.32) benign(0.004) TCGA-EE-A182-06 16 72130759 72130759 C T DHX38 Missense_Mutation p.P121L 0.23 tolerated(0.08) benign(0.004) TCGA-EE-A182-06 16 72138394 72138394 C T DHX38 Missense_Mutation p.R674W 0.39 deleterious(0) probably_damaging(0.994) TCGA-EE-A182-06 16 727794 727794 G A RHBDL1 Silent p.V353V 0.25 TCGA-EE-A182-06 16 727795 727795 G A RHBDL1 Missense_Mutation p.G354S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 16 74752907 74752907 G A FA2H Silent p.V255V 0.25 TCGA-EE-A182-06 16 77228727 77228733 CTGTGTG - MON1B Frame_Shift_Del p.V325Cfs*109 0.29 TCGA-EE-A182-06 16 77334216 77334216 C T ADAMTS18 Missense_Mutation p.R873K 0.36 tolerated(0.89) benign(0.001) TCGA-EE-A182-06 16 77396127 77396127 G A ADAMTS18 Missense_Mutation p.S364F 0.26 deleterious(0) probably_damaging(0.976) TCGA-EE-A182-06 16 81303877 81303877 C T BCMO1 Silent p.I319I 0.57 TCGA-EE-A182-06 16 84486808 84486808 G A ATP2C2 Silent p.V632V 0.36 TCGA-EE-A182-06 16 84792359 84792359 G A USP10 Silent p.V410V 0.29 TCGA-EE-A182-06 16 84796689 84796689 A G USP10 Missense_Mutation p.N550S 0.22 tolerated(0.27) benign(0.021) TCGA-EE-A182-06 16 85010020 85010020 G A ZDHHC7 Missense_Mutation p.P323S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 16 8866690 8866690 C T ABAT Silent p.I290I 0.28 TCGA-EE-A182-06 16 88902210 88902210 G A GALNS Silent p.F227F 0.32 TCGA-EE-A182-06 16 89702702 89702702 C T DPEP1 Nonsense_Mutation p.Q90* 0.22 TCGA-EE-A182-06 16 9857462 9857462 G A GRIN2A Silent p.L1313L 0.29 TCGA-EE-A182-06 16 9857975 9857975 G A GRIN2A Silent p.P1142P 0.24 TCGA-EE-A182-06 16 9858383 9858383 C T GRIN2A Silent p.A1006A 0.33 TCGA-EE-A182-06 17 10214431 10214431 C T MYH13 Missense_Mutation p.E1549K 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A182-06 17 10258027 10258027 G A MYH13 Silent p.I325I 0.31 TCGA-EE-A182-06 17 10300232 10300232 A G MYH8 Missense_Mutation p.L1417P 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 17 10315786 10315786 G A MYH8 Silent p.F439F 0.27 TCGA-EE-A182-06 17 10351250 10351250 C T MYH4 Missense_Mutation p.R1617K 0.33 tolerated(0.09) benign(0.06) TCGA-EE-A182-06 17 10352194 10352194 C T MYH4 Missense_Mutation p.R1451K 0.30 tolerated(0.15) benign(0.007) TCGA-EE-A182-06 17 10428663 10428663 C T MYH2 Missense_Mutation p.E1514K 0.23 deleterious(0.01) possibly_damaging(0.835) TCGA-EE-A182-06 17 10533023 10533023 T C MYH3 Missense_Mutation p.K1896R 0.30 tolerated(0.36) benign(0.013) TCGA-EE-A182-06 17 10555849 10555849 G A MYH3 Missense_Mutation p.A79V 0.32 tolerated(0.28) benign(0.01) TCGA-EE-A182-06 17 10590109 10590109 G A SCO1 Nonsense_Mutation p.Q236* 0.31 TCGA-EE-A182-06 17 11666862 11666862 G A DNAH9 Silent p.K2367K 0.31 TCGA-EE-A182-06 17 11790187 11790187 G A DNAH9 Missense_Mutation p.E3673K 0.32 possibly_damaging(0.607) TCGA-EE-A182-06 17 1198819 1198819 G A TUSC5 Missense_Mutation p.G141D 0.36 deleterious(0) probably_damaging(0.989) TCGA-EE-A182-06 17 1538487 1538487 G A SCARF1 Silent p.G686G 0.28 TCGA-EE-A182-06 17 17075095 17075095 C T MPRIP Nonsense_Mutation p.Q743* 0.29 TCGA-EE-A182-06 17 17248135 17248135 C T NT5M Missense_Mutation p.P153S 0.26 tolerated(0.1) benign(0.003) TCGA-EE-A182-06 17 18025411 18025411 C T MYO15A Silent p.P1099P 0.31 TCGA-EE-A182-06 17 18025412 18025412 C T MYO15A Silent p.L1100L 0.33 TCGA-EE-A182-06 17 18045494 18045494 C T MYO15A Silent p.F1917F 0.38 TCGA-EE-A182-06 17 18150582 18150582 G A FLII Silent p.L859L 0.27 TCGA-EE-A182-06 17 18167891 18167891 C T MIEF2 Missense_Mutation p.T404M 0.28 deleterious(0) possibly_damaging(0.809) TCGA-EE-A182-06 17 18659394 18659394 G A FBXW10 Missense_Mutation p.E387K 0.29 tolerated(0.06) possibly_damaging(0.881) TCGA-EE-A182-06 17 18874806 18874806 G A FAM83G Missense_Mutation p.P780S 0.27 tolerated(0.63) benign(0.004) TCGA-EE-A182-06 17 19646547 19646547 G A ALDH3A1 Missense_Mutation p.A131V 0.39 deleterious(0) possibly_damaging(0.781) TCGA-EE-A182-06 17 21731246 21731246 A G UBBP4 Intron 0.27 TCGA-EE-A182-06 17 21731248 21731248 G A UBBP4 Intron 0.24 TCGA-EE-A182-06 17 21731256 21731256 A G UBBP4 Intron 0.26 TCGA-EE-A182-06 17 263507 263507 C T C17orf97 Silent p.A291A 0.37 TCGA-EE-A182-06 17 26862111 26862111 G A FOXN1 Missense_Mutation p.E508K 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A182-06 17 27064464 27064464 G A NEK8 Missense_Mutation p.M253I 0.35 deleterious(0.01) possibly_damaging(0.506) TCGA-EE-A182-06 17 28417578 28417578 A T EFCAB5 Missense_Mutation p.M1275L 0.27 tolerated(0.1) possibly_damaging(0.793) TCGA-EE-A182-06 17 28539843 28539843 G A SLC6A4 Silent p.F373F 0.32 TCGA-EE-A182-06 17 29533315 29533315 C T NF1 Nonsense_Mutation p.R440* 0.30 TCGA-EE-A182-06 17 29557904 29557904 C A NF1 Nonsense_Mutation p.S1053* 0.42 TCGA-EE-A182-06 17 30348607 30348607 C T LRRC37B Nonsense_Mutation p.Q148* 0.27 TCGA-EE-A182-06 17 32483156 32483156 G A ASIC2 Silent p.S132S 0.39 TCGA-EE-A182-06 17 34499226 34499226 C T TBC1D3B Missense_Mutation p.R162Q 0.08 deleterious(0.02) benign(0.305) TCGA-EE-A182-06 17 35609886 35609886 A G ACACA Silent p.L635L 0.36 TCGA-EE-A182-06 17 36099564 36099564 C T HNF1B Silent p.R137R 0.33 TCGA-EE-A182-06 17 3844589 3844589 G A ATP2A3 Silent p.T592T 0.19 TCGA-EE-A182-06 17 39165283 39165283 G A KRTAP3-1 Missense_Mutation p.P15L 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A182-06 17 39197308 39197308 G A KRTAP1-1 Silent p.T114T 0.33 TCGA-EE-A182-06 17 39471551 39471551 G A KRTAP17-1 3'UTR 0.42 TCGA-EE-A182-06 17 39520160 39520160 G A KRT33B Silent p.P381P 0.32 TCGA-EE-A182-06 17 39597008 39597008 G A KRT38 Missense_Mutation p.R56C 0.26 deleterious(0.04) benign(0.021) TCGA-EE-A182-06 17 39645872 39645872 C T KRT36 Missense_Mutation p.G82D 0.29 tolerated(0.05) benign(0.117) TCGA-EE-A182-06 17 40179017 40179017 G A NKIRAS2 3'Flank 0.31 TCGA-EE-A182-06 17 40179018 40179018 G A NKIRAS2 3'Flank 0.31 TCGA-EE-A182-06 17 40265586 40265586 G A KAT2A 3'UTR 0.57 TCGA-EE-A182-06 17 40265587 40265587 G A KAT2A 3'UTR 0.57 TCGA-EE-A182-06 17 41346379 41346379 C T NBR1 Silent p.L513L 0.37 TCGA-EE-A182-06 17 41879012 41879012 G A MPP3 3'UTR 0.29 TCGA-EE-A182-06 17 41981850 41981850 G A MPP2 5'UTR 0.43 TCGA-EE-A182-06 17 42225865 42225865 C T C17orf53 Missense_Mutation p.P232S 0.32 tolerated(0.06) benign(0.344) TCGA-EE-A182-06 17 42249505 42249505 C T ASB16 Silent p.I131I 0.35 TCGA-EE-A182-06 17 43530788 43530788 G T PLEKHM1 Missense_Mutation p.F810L 0.31 tolerated(0.19) benign(0.037) TCGA-EE-A182-06 17 47123314 47123314 G A IGF2BP1 Silent p.V486V 0.25 TCGA-EE-A182-06 17 4800653 4800653 C G MINK1 3'UTR 0.21 TCGA-EE-A182-06 17 48605530 48605530 G A MYCBPAP Missense_Mutation p.R812Q 0.39 deleterious(0.04) probably_damaging(0.963) TCGA-EE-A182-06 17 5085533 5085533 G A ZNF594 Silent p.I673I 0.31 TCGA-EE-A182-06 17 51900463 51900463 C T KIF2B Silent p.F23F 0.27 TCGA-EE-A182-06 17 53481219 53481219 G A MMD Missense_Mutation p.R119C 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A182-06 17 53798339 53798339 G A TMEM100 Silent p.I31I 0.36 TCGA-EE-A182-06 17 53798372 53798372 C T TMEM100 Silent p.T20T 0.36 TCGA-EE-A182-06 17 5462569 5462569 C T NLRP1 Missense_Mutation p.E483K 0.23 tolerated(0.15) possibly_damaging(0.627) TCGA-EE-A182-06 17 55962751 55962751 G A CUEDC1 Missense_Mutation p.P59S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 17 56348085 56348085 G A MPO Missense_Mutation p.P724S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A182-06 17 56389042 56389042 G A BZRAP1 Missense_Mutation p.P991S 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A182-06 17 58282963 58282963 G A USP32 Silent p.L1032L 0.24 TCGA-EE-A182-06 17 59761459 59761459 A C BRIP1 Missense_Mutation p.I983S 0.35 tolerated_low_confidence(0.81) benign(0.003) TCGA-EE-A182-06 17 60033148 60033148 A T MED13 Missense_Mutation p.L1892H 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 17 61744305 61744305 T C MAP3K3 Silent p.S160S 0.24 TCGA-EE-A182-06 17 61829203 61829203 A G CCDC47 Intron 0.24 TCGA-EE-A182-06 17 61908517 61908517 T C PSMC5 Silent p.S267S 0.24 TCGA-EE-A182-06 17 64225497 64225497 T C APOH Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.986) TCGA-EE-A182-06 17 6674121 6674121 C T XAF1 Missense_Mutation p.H223Y 0.31 tolerated(1) benign(0.05) TCGA-EE-A182-06 17 66871838 66871838 C T ABCA8 Silent p.R1429R 0.32 TCGA-EE-A182-06 17 67119506 67119506 G A ABCA6 Missense_Mutation p.S437L 0.41 tolerated(0.06) benign(0.039) TCGA-EE-A182-06 17 7081841 7081841 C T ASGR1 Silent p.E14E 0.35 TCGA-EE-A182-06 17 7217666 7217666 G A GPS2 Silent p.F87F 0.19 TCGA-EE-A182-06 17 7230054 7230054 G A NEURL4 Silent p.P356P 0.38 TCGA-EE-A182-06 17 72832415 72832415 C T TMEM104 Silent p.F360F 0.30 TCGA-EE-A182-06 17 73488651 73488651 C T KIAA0195 Missense_Mutation p.P565S 0.36 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A182-06 17 73566310 73566310 C T LLGL2 Silent p.H616H 0.19 TCGA-EE-A182-06 17 73727398 73727398 G A ITGB4 Silent p.K388K 0.26 TCGA-EE-A182-06 17 73998027 73998027 C T CDK3 Silent p.I63I 0.24 TCGA-EE-A182-06 17 74006303 74006303 C T EVPL Missense_Mutation p.V995M 0.34 tolerated(0.14) benign(0.005) TCGA-EE-A182-06 17 77042653 77042653 G A C1QTNF1 Missense_Mutation p.E58K 0.30 tolerated_low_confidence(0.07) benign(0.004) TCGA-EE-A182-06 17 77075668 77075668 C T ENGASE Missense_Mutation p.P172S 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A182-06 17 7726784 7726784 G A DNAH2 Missense_Mutation p.D3723N 0.27 benign(0.38) TCGA-EE-A182-06 17 78022533 78022533 C T CCDC40 Silent p.S276S 0.47 TCGA-EE-A182-06 17 78362453 78362453 A G RNF213 Silent p.E4988E 0.32 TCGA-EE-A182-06 17 79080642 79080642 C T BAIAP2 Missense_Mutation p.P479S 0.54 tolerated(0.23) benign(0.007) TCGA-EE-A182-06 17 79508409 79508409 C T C17orf70 Missense_Mutation p.E814K 0.33 deleterious(0.01) possibly_damaging(0.53) TCGA-EE-A182-06 17 8215334 8215334 C T ARHGEF15 5'UTR 0.29 TCGA-EE-A182-06 17 8409749 8409749 G A MYH10 Silent p.L1091L 0.25 TCGA-EE-A182-06 17 8706699 8706699 G A PIK3R6 Silent p.S718S 0.19 TCGA-EE-A182-06 17 9515667 9515667 G A WDR16 Missense_Mutation p.R299Q 0.44 tolerated(0.07) benign(0.014) TCGA-EE-A182-06 17 9538849 9538849 G A WDR16 Missense_Mutation p.G483E 0.22 deleterious(0) probably_damaging(0.98) TCGA-EE-A182-06 18 12324998 12324998 C T TUBB6 Intron 0.31 TCGA-EE-A182-06 18 13885119 13885119 G A MC2R Silent p.F133F 0.24 TCGA-EE-A182-06 18 14106164 14106164 C T ZNF519 Silent p.Q125Q 0.25 TCGA-EE-A182-06 18 14542879 14542879 G A POTEC Silent p.S89S 0.10 TCGA-EE-A182-06 18 21218861 21218861 G A ANKRD29 Silent p.V94V 0.31 TCGA-EE-A182-06 18 21330960 21330960 G A LAMA3 Missense_Mutation p.A255T 0.37 probably_damaging(0.923) TCGA-EE-A182-06 18 21364004 21364004 G A LAMA3 Missense_Mutation p.E496K 0.24 benign(0.232) TCGA-EE-A182-06 18 2578003 2578003 C T NDC80 Silent p.S113S 0.26 TCGA-EE-A182-06 18 28604315 28604315 C T DSC3 Missense_Mutation p.G259S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 18 28742522 28742522 G A DSC1 Silent p.F12F 0.27 TCGA-EE-A182-06 18 28914104 28914104 G A DSG1 Missense_Mutation p.G315E 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 18 28923508 28923508 C T DSG1 Missense_Mutation p.H595Y 0.29 deleterious(0) possibly_damaging(0.826) TCGA-EE-A182-06 18 28934464 28934464 C T DSG1 Missense_Mutation p.P769S 0.29 tolerated(0.11) possibly_damaging(0.835) TCGA-EE-A182-06 18 28968435 28968435 G A DSG4 Missense_Mutation p.E108K 0.30 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A182-06 18 29038546 29038546 G A DSG3 Missense_Mutation p.E119K 0.26 tolerated(0.12) benign(0.159) TCGA-EE-A182-06 18 29055931 29055931 G A DSG3 Missense_Mutation p.G903E 0.27 tolerated(0.44) possibly_damaging(0.637) TCGA-EE-A182-06 18 2946444 2946444 G A LPIN2 Intron 0.26 TCGA-EE-A182-06 18 30254720 30254720 T A KLHL14 Missense_Mutation p.K596I 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A182-06 18 30950043 30950043 C T CCDC178 Missense_Mutation p.E107K 0.23 deleterious(0) possibly_damaging(0.898) TCGA-EE-A182-06 18 40503584 40503584 G A RIT2 Missense_Mutation p.P127S 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 18 40850252 40850252 A G SYT4 3'UTR 0.35 TCGA-EE-A182-06 18 43204675 43204694 AGCAGATACAAACTCTACGA - SLC14A2 Frame_Shift_Del p.S16Gfs*26 0.22 TCGA-EE-A182-06 18 44260436 44260436 G A ST8SIA5 Missense_Mutation p.R234C 0.56 possibly_damaging(0.579) TCGA-EE-A182-06 18 45567061 45567061 C T ZBTB7C Missense_Mutation p.E140K 0.34 tolerated(0.23) possibly_damaging(0.899) TCGA-EE-A182-06 18 47398567 47398567 C T MYO5B Silent p.P1191P 0.28 TCGA-EE-A182-06 18 47563319 47563319 T C MYO5B Missense_Mutation p.Y119C 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 18 48190513 48190513 C T MAPK4 Missense_Mutation p.A62V 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A182-06 18 50278691 50278691 C T DCC Missense_Mutation p.S120F 0.26 deleterious(0.01) benign(0.149) TCGA-EE-A182-06 18 50432427 50432427 C T DCC Silent p.F142F 0.40 TCGA-EE-A182-06 18 50985602 50985602 G A DCC Silent p.K1131K 0.28 TCGA-EE-A182-06 18 50985695 50985695 G A DCC Missense_Mutation p.M1162I 0.28 deleterious(0.01) benign(0.309) TCGA-EE-A182-06 18 51053115 51053115 G A DCC Missense_Mutation p.E1414K 0.21 deleterious(0.01) benign(0.3) TCGA-EE-A182-06 18 52605268 52605268 C T CCDC68 Missense_Mutation p.D89N 0.16 tolerated(0.35) benign(0.005) TCGA-EE-A182-06 18 55992244 55992244 T A NEDD4L Missense_Mutation p.V177D 0.31 deleterious(0.01) possibly_damaging(0.556) TCGA-EE-A182-06 18 56367809 56367809 C T MALT1 Missense_Mutation p.P212L 0.26 tolerated(0.3) benign(0.023) TCGA-EE-A182-06 18 56985621 56985621 T A CPLX4 Missense_Mutation p.N25I 0.18 deleterious(0.05) benign(0.035) TCGA-EE-A182-06 18 57133995 57133995 C T CCBE1 Missense_Mutation p.G177R 0.28 deleterious(0.01) benign(0.282) TCGA-EE-A182-06 18 57136752 57136752 C T CCBE1 Missense_Mutation p.R118Q 0.35 tolerated(0.1) benign(0.421) TCGA-EE-A182-06 18 59157792 59157792 G A CDH20 Nonsense_Mutation p.W2* 0.30 TCGA-EE-A182-06 18 61390289 61390289 G A SERPINB11 Missense_Mutation p.E279K 0.19 tolerated(0.52) benign(0.359) TCGA-EE-A182-06 18 63430284 63430284 G A CDH7 Missense_Mutation p.G69E 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 18 63547909 63547909 G A CDH7 Missense_Mutation p.E713K 0.28 tolerated(0.36) possibly_damaging(0.489) TCGA-EE-A182-06 18 66564501 66564501 G A CCDC102B Missense_Mutation p.E367K 0.18 tolerated(0.05) possibly_damaging(0.839) TCGA-EE-A182-06 18 7023254 7023254 G A LAMA1 Silent p.C870C 0.32 TCGA-EE-A182-06 18 71930586 71930586 G A CYB5A Missense_Mutation p.P86S 0.28 deleterious(0) probably_damaging(0.984) TCGA-EE-A182-06 18 72347218 72347218 C T ZNF407 Missense_Mutation p.R1415C 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A182-06 18 8720464 8720464 C T SOGA2 Silent p.A109A 0.23 TCGA-EE-A182-06 19 10080595 10080595 G A COL5A3 Missense_Mutation p.P1314S 0.28 unknown(0) TCGA-EE-A182-06 19 10463122 10463122 C A TYK2 Missense_Mutation p.Q1102H 0.31 tolerated(0.15) probably_damaging(0.964) TCGA-EE-A182-06 19 10578289 10578289 C T PDE4A Missense_Mutation p.P885S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A182-06 19 10909219 10909219 C T DNM2 Missense_Mutation p.R465W 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 19 11123651 11123651 C T SMARCA4 Silent p.S767S 0.33 TCGA-EE-A182-06 19 11474442 11474442 C T DKFZP761J1410 Silent p.L273L 0.24 TCGA-EE-A182-06 19 12430286 12430286 G A ZNF563 Nonsense_Mutation p.R185* 0.27 TCGA-EE-A182-06 19 12692534 12692534 G A ZNF490 Missense_Mutation p.P119S 0.29 tolerated(0.21) benign(0.07) TCGA-EE-A182-06 19 12738595 12738595 C T ZNF791 Silent p.F84F 0.36 TCGA-EE-A182-06 19 12799959 12799959 G A FBXW9 3'UTR 0.20 TCGA-EE-A182-06 19 12936681 12936681 C T RTBDN Missense_Mutation p.G209R 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 19 15289974 15289974 G A NOTCH3 Missense_Mutation p.P1194S 0.32 deleterious(0.03) benign(0.438) TCGA-EE-A182-06 19 15483971 15483971 A G AKAP8 Silent p.D184D 0.28 TCGA-EE-A182-06 19 15587070 15587070 G A PGLYRP2 Silent p.V137V 0.35 TCGA-EE-A182-06 19 15651427 15651427 C T CYP4F22 Nonsense_Mutation p.Q280* 0.26 TCGA-EE-A182-06 19 15806853 15806853 T A CYP4F12 Missense_Mutation p.L408H 0.38 deleterious(0) probably_damaging(0.992) TCGA-EE-A182-06 19 15807289 15807289 C T CYP4F12 Missense_Mutation p.P455L 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-EE-A182-06 19 15905325 15905325 G A OR10H5 Missense_Mutation p.G156E 0.31 deleterious(0.03) probably_damaging(1) TCGA-EE-A182-06 19 16003245 16003245 C T CYP4F2 Silent p.G133G 0.34 TCGA-EE-A182-06 19 16024623 16024623 G A CYP4F11 Silent p.P498P 0.39 TCGA-EE-A182-06 19 17038878 17038878 G A CPAMD8 Missense_Mutation p.T1151I 0.43 deleterious(0.05) probably_damaging(0.994) TCGA-EE-A182-06 19 17394615 17394615 G A ANKLE1 Missense_Mutation p.E348K 0.23 tolerated(0.23) benign(0.001) TCGA-EE-A182-06 19 17992853 17992853 G A SLC5A5 Silent p.R381R 0.25 TCGA-EE-A182-06 19 18119156 18119156 T C ARRDC2 Silent p.L13L 0.24 TCGA-EE-A182-06 19 19745420 19745420 G A GMIP Silent p.T660T 0.25 TCGA-EE-A182-06 19 22156775 22156775 G A ZNF208 Missense_Mutation p.S354L 0.23 deleterious(0.04) possibly_damaging(0.602) TCGA-EE-A182-06 19 22270818 22270818 G A ZNF257 Missense_Mutation p.R89Q 0.19 tolerated(1) benign(0) TCGA-EE-A182-06 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A182-06 19 22364370 22364370 G A ZNF676 Missense_Mutation p.S50F 0.29 deleterious(0) benign(0.058) TCGA-EE-A182-06 19 22939459 22939459 C T ZNF99 3'Flank 0.38 TCGA-EE-A182-06 19 22940632 22940632 C T ZNF99 Silent p.R693R 0.29 TCGA-EE-A182-06 19 22941198 22941198 C T ZNF99 Missense_Mutation p.E505K 0.35 deleterious(0.02) benign(0.062) TCGA-EE-A182-06 19 22941365 22941365 C T ZNF99 Missense_Mutation p.G449E 0.26 deleterious(0.01) probably_damaging(0.92) TCGA-EE-A182-06 19 23159561 23159561 C T ZNF728 Missense_Mutation p.R193K 0.27 tolerated(0.35) possibly_damaging(0.718) TCGA-EE-A182-06 19 2878084 2878084 G A ZNF556 Silent p.G376G 0.23 TCGA-EE-A182-06 19 2878448 2878448 C T ZNF556 3'UTR 0.27 TCGA-EE-A182-06 19 30934865 30934865 C T ZNF536 Silent p.C132C 0.27 TCGA-EE-A182-06 19 30935979 30935979 G A ZNF536 Missense_Mutation p.E504K 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A182-06 19 33089106 33089106 G A ANKRD27 Missense_Mutation p.P1033L 0.37 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A182-06 19 33392208 33392208 A G CEP89 Missense_Mutation p.L559S 0.34 deleterious(0) benign(0.341) TCGA-EE-A182-06 19 33493752 33493752 G A RHPN2 Silent p.F305F 0.21 TCGA-EE-A182-06 19 35842971 35842971 G A FFAR1 Missense_Mutation p.A173T 0.29 tolerated(0.56) possibly_damaging(0.872) TCGA-EE-A182-06 19 36207099 36207099 C A ZBTB32 Silent p.P363P 0.12 TCGA-EE-A182-06 19 36362174 36362174 G T APLP1 Nonsense_Mutation p.E154* 0.19 TCGA-EE-A182-06 19 36362175 36362175 A C APLP1 Missense_Mutation p.E154A 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A182-06 19 38976641 38976641 C T RYR1 Silent p.F1782F 0.41 TCGA-EE-A182-06 19 39108532 39108532 C T MAP4K1 Missense_Mutation p.D2N 0.36 tolerated_low_confidence(0.41) benign(0.164) TCGA-EE-A182-06 19 39108533 39108533 C T MAP4K1 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-EE-A182-06 19 39977088 39977088 C T TIMM50 Missense_Mutation p.R320C 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A182-06 19 40419615 40419615 T A FCGBP Missense_Mutation p.R1127W 0.29 probably_damaging(1) TCGA-EE-A182-06 19 40762863 40762863 G A AKT2 Silent p.L49L 0.24 TCGA-EE-A182-06 19 40886649 40886649 C T HIPK4 Missense_Mutation p.E417K 0.30 deleterious(0.02) benign(0.05) TCGA-EE-A182-06 19 40889927 40889927 C T HIPK4 Silent p.K195K 0.43 TCGA-EE-A182-06 19 42187889 42187889 A G CEACAM7 Missense_Mutation p.L178P 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 19 4234773 4234773 G A EBI3 Silent p.L163L 0.27 TCGA-EE-A182-06 19 42354496 42354496 G A DMRTC2 Intron 0.32 TCGA-EE-A182-06 19 42396720 42396720 C T ARHGEF1 Silent p.F153F 0.40 TCGA-EE-A182-06 19 43233375 43233375 G A PSG3 Silent p.I381I 0.28 TCGA-EE-A182-06 19 43430593 43430593 G A PSG7 Missense_Mutation p.L329F 0.32 tolerated(0.1) probably_damaging(0.927) TCGA-EE-A182-06 19 43579737 43579737 C T PSG2 Missense_Mutation p.E160K 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A182-06 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.26 tolerated(0.18) possibly_damaging(0.507) TCGA-EE-A182-06 19 44377351 44377351 C T ZNF404 Missense_Mutation p.G339S 0.28 tolerated(0.3) benign(0.202) TCGA-EE-A182-06 19 46119792 46119792 G A EML2 Missense_Mutation p.S680F 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 19 46195227 46195227 C T SNRPD2 5'UTR 0.28 TCGA-EE-A182-06 19 46387736 46387736 G A IRF2BP1 Silent p.L433L 0.18 TCGA-EE-A182-06 19 46387737 46387737 G A IRF2BP1 Silent p.A432A 0.17 TCGA-EE-A182-06 19 46997226 46997226 G A PNMAL2 Silent p.S499S 0.34 TCGA-EE-A182-06 19 47124880 47124880 C T PTGIR Missense_Mutation p.G273E 0.36 tolerated(1) benign(0.017) TCGA-EE-A182-06 19 47870377 47870377 C T DHX34 Missense_Mutation p.S578F 0.22 deleterious(0.01) possibly_damaging(0.797) TCGA-EE-A182-06 19 4793243 4793243 C T FEM1A Silent p.I459I 0.34 TCGA-EE-A182-06 19 48511977 48511977 C T ELSPBP1 Missense_Mutation p.S18F 0.35 tolerated(0.75) benign(0.002) TCGA-EE-A182-06 19 48660362 48660362 G A LIG1 Silent p.P93P 0.31 TCGA-EE-A182-06 19 49391338 49391338 C T TULP2 Missense_Mutation p.E273K 0.29 tolerated(0.14) benign(0.017) TCGA-EE-A182-06 19 49416303 49416303 T A NUCB1 Missense_Mutation p.H172Q 0.31 deleterious(0.04) benign(0.266) TCGA-EE-A182-06 19 49793350 49793350 G A SLC6A16 3'UTR 0.32 TCGA-EE-A182-06 19 49963007 49963007 T C ALDH16A1 Missense_Mutation p.V134A 0.25 tolerated(0.47) benign(0.122) TCGA-EE-A182-06 19 49993894 49993894 C T RPL13A Intron 0.38 TCGA-EE-A182-06 19 50098289 50098289 G A PRR12 Missense_Mutation p.D233N 0.41 possibly_damaging(0.728) TCGA-EE-A182-06 19 50461681 50461681 C T SIGLEC11 Missense_Mutation p.E504K 0.20 tolerated(0.48) benign(0.006) TCGA-EE-A182-06 19 51465129 51465129 G A KLK6 Silent p.F151F 0.32 TCGA-EE-A182-06 19 51483547 51483547 G A KLK7 Missense_Mutation p.P140S 0.16 tolerated(0.08) possibly_damaging(0.453) TCGA-EE-A182-06 19 51509946 51509946 G T KLK9 Silent p.L78L 0.35 TCGA-EE-A182-06 19 51645996 51645996 C T SIGLEC7 Missense_Mutation p.R124C 0.36 deleterious(0) possibly_damaging(0.743) TCGA-EE-A182-06 19 51767249 51767249 G A SIGLECL1 5'UTR 0.31 TCGA-EE-A182-06 19 52569316 52569316 T A ZNF841 Missense_Mutation p.I607F 0.31 tolerated(0.07) benign(0.004) TCGA-EE-A182-06 19 52857061 52857061 G A ZNF610 Missense_Mutation p.G64R 0.25 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A182-06 19 52955019 52955019 G A ZNF578 5'Flank 0.28 TCGA-EE-A182-06 19 53762570 53762570 C T VN1R2 Silent p.I314I 0.28 TCGA-EE-A182-06 19 54216635 54216635 C T MIR519D RNA 0.32 TCGA-EE-A182-06 19 54228773 54228773 C T MIR516B2 RNA 0.33 TCGA-EE-A182-06 19 54244625 54244625 C T MIR517C RNA 0.33 TCGA-EE-A182-06 19 54759940 54759940 C T LILRB5 Silent p.S207S 0.36 TCGA-EE-A182-06 19 54802747 54802747 G A LILRA3 Missense_Mutation p.P232S 0.72 deleterious(0.01) possibly_damaging(0.579) TCGA-EE-A182-06 19 54872792 54872792 G A LAIR1 Missense_Mutation p.S32L 0.30 tolerated(0.06) benign(0.075) TCGA-EE-A182-06 19 55349114 55349114 G A KIR2DS4 Missense_Mutation p.D52N 0.63 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A182-06 19 55494523 55494523 G A NLRP2 Missense_Mutation p.G486E 0.34 tolerated(0.14) benign(0.08) TCGA-EE-A182-06 19 55501423 55501423 G A NLRP2 Nonsense_Mutation p.W800* 0.30 TCGA-EE-A182-06 19 55678020 55678020 G A DNAAF3 5'Flank 0.26 TCGA-EE-A182-06 19 56153944 56153944 C A ZNF580 Missense_Mutation p.P24T 0.12 tolerated(0.1) unknown(0) TCGA-EE-A182-06 19 5616247 5616247 A T SAFB2 Missense_Mutation p.F147I 0.24 tolerated(0.39) benign(0.109) TCGA-EE-A182-06 19 56163871 56163871 G A CCDC106 Missense_Mutation p.R201Q 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A182-06 19 56243804 56243804 C T NLRP9 Missense_Mutation p.D465N 0.28 tolerated(0.69) benign(0) TCGA-EE-A182-06 19 56249763 56249763 A G NLRP9 5'UTR 0.37 TCGA-EE-A182-06 19 56300293 56300293 A G NLRP11 Missense_Mutation p.V912A 0.21 tolerated(0.3) benign(0.311) TCGA-EE-A182-06 19 56321651 56321651 C T NLRP11 Missense_Mutation p.E109K 0.26 tolerated(0.16) benign(0.219) TCGA-EE-A182-06 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.27 deleterious(0) possibly_damaging(0.882) TCGA-EE-A182-06 19 56421954 56421954 G A NLRP13 Missense_Mutation p.P753S 0.24 tolerated(0.07) possibly_damaging(0.685) TCGA-EE-A182-06 19 56481950 56481950 C T NLRP8 Missense_Mutation p.L808F 0.24 tolerated(0.14) benign(0.092) TCGA-EE-A182-06 19 56549405 56549405 G A NLRP5 Missense_Mutation p.G877E 0.26 tolerated(0.21) benign(0.261) TCGA-EE-A182-06 19 57640381 57640381 C T USP29 Missense_Mutation p.S113F 0.24 deleterious(0.02) benign(0.055) TCGA-EE-A182-06 19 58117086 58117086 C T ZNF530 Missense_Mutation p.P65S 0.17 tolerated(0.22) benign(0.021) TCGA-EE-A182-06 19 58189737 58189737 G A ZSCAN4 Missense_Mutation p.G256R 0.18 tolerated(0.36) benign(0.018) TCGA-EE-A182-06 19 5831342 5831342 C T FUT6 3'UTR 0.34 TCGA-EE-A182-06 19 6467759 6467759 G A DENND1C Missense_Mutation p.P721L 0.27 tolerated_low_confidence(0.09) benign(0.012) TCGA-EE-A182-06 19 6664858 6664858 C T TNFSF14 3'UTR 0.23 TCGA-EE-A182-06 19 6684423 6684423 G T C3 Missense_Mutation p.T1383N 0.26 deleterious(0.03) benign(0.249) TCGA-EE-A182-06 19 6707508 6707508 G A C3 Silent p.S672S 0.36 TCGA-EE-A182-06 19 6937282 6937282 C T EMR1 Missense_Mutation p.L804F 0.34 deleterious(0.03) benign(0.272) TCGA-EE-A182-06 19 7117304 7117304 G A INSR Silent p.F1304F 0.28 TCGA-EE-A182-06 19 8175829 8175829 C T FBN3 Silent p.G1411G 0.33 TCGA-EE-A182-06 19 8995693 8995693 C T MUC16 Silent p.G13765G 0.26 TCGA-EE-A182-06 19 9005631 9005631 G A MUC16 Silent p.L13259L 0.26 TCGA-EE-A182-06 19 9066121 9066121 G A MUC16 Missense_Mutation p.P7109S 0.24 unknown(0) TCGA-EE-A182-06 19 9075211 9075211 G A MUC16 Silent p.L4079L 0.24 TCGA-EE-A182-06 19 9076139 9076139 G A MUC16 Silent p.I3769I 0.40 TCGA-EE-A182-06 19 9083269 9083269 G A MUC16 Missense_Mutation p.P2849L 0.35 unknown(0) TCGA-EE-A182-06 19 9090293 9090293 C T MUC16 Missense_Mutation p.A508T 0.24 unknown(0) TCGA-EE-A182-06 19 9325379 9325379 G A OR7D4 Silent p.I45I 0.21 TCGA-EE-A182-06 19 9580312 9580312 G A ZNF560 Missense_Mutation p.L175F 0.23 tolerated(0.6) benign(0.001) TCGA-EE-A182-06 19 9584930 9584930 C T ZNF560 Silent p.Q34Q 0.30 TCGA-EE-A182-06 19 9800950 9800950 G A ZNF812 Missense_Mutation p.T410I 0.28 tolerated(0.21) benign(0.003) TCGA-EE-A182-06 1 10477453 10477453 C T PGD Silent p.I332I 0.48 TCGA-EE-A182-06 1 107691441 107691441 C T NTNG1 Missense_Mutation p.P76S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 1 110301728 110301728 C T EPS8L3 Silent p.L139L 0.29 TCGA-EE-A182-06 1 110740128 110740128 C T SLC6A17 Silent p.F574F 0.27 TCGA-EE-A182-06 1 113153619 113153619 C A ST7L Nonsense_Mutation p.E99* 0.38 TCGA-EE-A182-06 1 114454215 114454215 C T DCLRE1B Missense_Mutation p.P334L 0.30 deleterious(0.03) benign(0.081) TCGA-EE-A182-06 1 115537704 115537704 T C SYCP1 3'UTR 0.25 TCGA-EE-A182-06 1 116574244 116574244 T C SLC22A15 Intron 0.21 TCGA-EE-A182-06 1 11708696 11708696 C T FBXO2 3'UTR 0.69 TCGA-EE-A182-06 1 11897473 11897473 C T CLCN6 Missense_Mutation p.P738S 0.42 deleterious(0) benign(0.33) TCGA-EE-A182-06 1 11897474 11897474 C T CLCN6 Missense_Mutation p.P738L 0.42 tolerated(0.15) benign(0.172) TCGA-EE-A182-06 1 119427284 119427284 A G TBX15 3'UTR 0.17 TCGA-EE-A182-06 1 119936482 119936482 C T HAO2 3'UTR 0.27 TCGA-EE-A182-06 1 119964988 119964988 C T HSD3B2 Silent p.T288T 0.29 TCGA-EE-A182-06 1 12267016 12267016 G A TNFRSF1B Missense_Mutation p.G442E 0.36 tolerated(0.26) benign(0) TCGA-EE-A182-06 1 12639420 12639420 C T DHRS3 Silent p.L120L 0.39 TCGA-EE-A182-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.15 tolerated(0.14) benign(0.015) TCGA-EE-A182-06 1 142713059 142713059 C T RP11-417J8.6 RNA 0.25 TCGA-EE-A182-06 1 144865923 144865923 G A PDE4DIP Missense_Mutation p.T1886I 0.19 deleterious(0.01) possibly_damaging(0.667) TCGA-EE-A182-06 1 149942998 149942998 G A OTUD7B Silent p.I89I 0.47 TCGA-EE-A182-06 1 150129122 150129122 C T PLEKHO1 Silent p.F112F 0.31 TCGA-EE-A182-06 1 150526424 150526424 G A ADAMTSL4 Silent p.T319T 0.41 TCGA-EE-A182-06 1 151754020 151754020 C T TDRKH Silent p.E56E 0.16 TCGA-EE-A182-06 1 152059011 152059011 C T TCHHL1 Missense_Mutation p.E383K 0.61 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A182-06 1 152185640 152185640 C T HRNR Missense_Mutation p.G2822E 0.57 unknown(0) TCGA-EE-A182-06 1 152283121 152283121 C T FLG Missense_Mutation p.G1414E 0.19 probably_damaging(0.931) TCGA-EE-A182-06 1 152286641 152286641 C T FLG Missense_Mutation p.D241N 0.48 benign(0.121) TCGA-EE-A182-06 1 152325163 152325163 C T FLG2 Missense_Mutation p.G1700E 0.55 probably_damaging(0.931) TCGA-EE-A182-06 1 152325811 152325811 C T FLG2 Missense_Mutation p.G1484E 0.53 probably_damaging(0.97) TCGA-EE-A182-06 1 152944667 152944667 T G SPRR4 3'UTR 0.55 TCGA-EE-A182-06 1 153362584 153362584 C T S100A8 Missense_Mutation p.E93K 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.636) TCGA-EE-A182-06 1 154841945 154841945 C T KCNN3 Missense_Mutation p.D166N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.685) TCGA-EE-A182-06 1 154931902 154931902 G A PYGO2 Missense_Mutation p.P192S 0.17 tolerated(0.14) possibly_damaging(0.857) TCGA-EE-A182-06 1 155233150 155233150 G A CLK2 Silent p.F452F 0.68 TCGA-EE-A182-06 1 156105716 156105716 C T LMNA Nonsense_Mutation p.R321* 0.17 TCGA-EE-A182-06 1 156823895 156823895 C T INSRR Missense_Mutation p.D96N 0.17 tolerated(0.08) benign(0.02) TCGA-EE-A182-06 1 156845906 156845906 C T NTRK1 Silent p.L512L 0.59 TCGA-EE-A182-06 1 157485415 157485415 G A FCRL5 3'UTR 0.22 TCGA-EE-A182-06 1 158224966 158224966 G A CD1A Missense_Mutation p.D51N 0.38 deleterious(0.03) benign(0.059) TCGA-EE-A182-06 1 158636129 158636129 C T SPTA1 Missense_Mutation p.E733K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 1 159273776 159273776 G A FCER1A Silent p.E45E 0.57 TCGA-EE-A182-06 1 159410031 159410033 CAT TA OR10J1 Frame_Shift_Del p.I162Mfs*3 0.27 TCGA-EE-A182-06 1 159557927 159557927 C T APCS Missense_Mutation p.S34F 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 1 160194883 160194883 G A DCAF8 Silent p.I390I 0.16 TCGA-EE-A182-06 1 161179046 161179046 C A NDUFS2 Missense_Mutation p.L153I 0.33 deleterious(0.02) benign(0.103) TCGA-EE-A182-06 1 166991139 166991139 C T MAEL 3'UTR 0.52 TCGA-EE-A182-06 1 167097243 167097243 A G DUSP27 Missense_Mutation p.R959G 0.52 tolerated(0.08) benign(0.014) TCGA-EE-A182-06 1 167992241 167992241 T G DCAF6 Missense_Mutation p.V522G 0.22 tolerated_low_confidence(0.06) benign(0.166) TCGA-EE-A182-06 1 168282176 168282176 C T TBX19 Missense_Mutation p.P428L 0.24 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A182-06 1 1688036 1688036 G A NADK Silent p.I280I 0.42 TCGA-EE-A182-06 1 17085053 17085053 C T MST1L RNA 0.09 TCGA-EE-A182-06 1 175375367 175375367 C T TNR Missense_Mutation p.E162K 0.44 deleterious(0.01) benign(0.41) TCGA-EE-A182-06 1 181764100 181764100 G A CACNA1E Missense_Mutation p.S2043N 0.15 tolerated(0.08) possibly_damaging(0.58) TCGA-EE-A182-06 1 181767606 181767606 C T CACNA1E Missense_Mutation p.S2193F 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A182-06 1 181767737 181767737 G A CACNA1E Missense_Mutation p.E2237K 0.41 tolerated(0.46) possibly_damaging(0.786) TCGA-EE-A182-06 1 182555226 182555226 C T RNASEL Missense_Mutation p.G239E 0.36 tolerated(0.07) benign(0.118) TCGA-EE-A182-06 1 182555227 182555227 C G RNASEL Missense_Mutation p.G239R 0.35 tolerated(0.12) benign(0.118) TCGA-EE-A182-06 1 182555381 182555381 G A RNASEL Silent p.L187L 0.28 TCGA-EE-A182-06 1 182787806 182787806 C T NPL Silent p.F196F 0.38 TCGA-EE-A182-06 1 186089163 186089163 C T HMCN1 Missense_Mutation p.P4039S 0.49 possibly_damaging(0.717) TCGA-EE-A182-06 1 190067969 190067969 C T BRINP3 Missense_Mutation p.D494N 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 1 19433125 19433125 G A UBR4 Missense_Mutation p.R4111C 0.48 probably_damaging(0.973) TCGA-EE-A182-06 1 19568942 19568942 G A EMC1 Silent p.L136L 0.36 TCGA-EE-A182-06 1 19653762 19653762 C T PQLC2 Silent p.F220F 0.34 TCGA-EE-A182-06 1 197390638 197390638 C T CRB1 Silent p.H560H 0.38 TCGA-EE-A182-06 1 200969668 200969668 C T KIF21B Missense_Mutation p.R512K 0.18 tolerated(0.06) possibly_damaging(0.867) TCGA-EE-A182-06 1 200972904 200972904 G A KIF21B Missense_Mutation p.T341I 0.63 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 1 201354881 201354881 C T LAD1 Missense_Mutation p.R360Q 0.55 tolerated(0.21) benign(0.257) TCGA-EE-A182-06 1 201356024 201356024 G A LAD1 Silent p.A155A 0.16 TCGA-EE-A182-06 1 201868629 201868629 C T LMOD1 Silent p.V504V 0.23 TCGA-EE-A182-06 1 203015021 203015021 G A PPFIA4 Missense_Mutation p.R11H 0.05 deleterious(0) probably_damaging(0.981) TCGA-EE-A182-06 1 204399119 204399119 G A PIK3C2B Missense_Mutation p.A1443V 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 1 204433169 204433169 C T PIK3C2B Silent p.K427K 0.15 TCGA-EE-A182-06 1 205238736 205238736 C T TMCC2 Missense_Mutation p.S469F 0.20 deleterious(0) possibly_damaging(0.873) TCGA-EE-A182-06 1 205739572 205739572 A G RAB7L1 Silent p.I170I 0.48 TCGA-EE-A182-06 1 205884511 205884511 G A SLC26A9 Missense_Mutation p.H784Y 0.39 deleterious_low_confidence(0) benign(0.248) TCGA-EE-A182-06 1 205890904 205890904 G A SLC26A9 Silent p.T615T 0.25 TCGA-EE-A182-06 1 206145485 206145485 C T FAM72A Missense_Mutation p.P88S 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 1 206230971 206230971 C T AVPR1B Silent p.S368S 0.57 TCGA-EE-A182-06 1 206711563 206711563 G A RASSF5 Missense_Mutation p.E174K 0.14 tolerated(0.5) benign(0.016) TCGA-EE-A182-06 1 207643227 207643227 G A CR2 Nonsense_Mutation p.W335* 0.28 TCGA-EE-A182-06 1 207890829 207890829 C T CR1L Missense_Mutation p.P479S 0.29 deleterious(0.04) possibly_damaging(0.701) TCGA-EE-A182-06 1 209933640 209933640 G A TRAF3IP3 Missense_Mutation p.E86K 0.39 tolerated(0.19) benign(0.031) TCGA-EE-A182-06 1 216348792 216348792 C T USH2A Missense_Mutation p.G1477R 0.26 benign(0.072) TCGA-EE-A182-06 1 220192405 220192405 G A EPRS Missense_Mutation p.P456S 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 1 222713617 222713617 G A HHIPL2 Silent p.Y395Y 0.61 TCGA-EE-A182-06 1 223568625 223568625 G A C1orf65 Missense_Mutation p.S603N 0.13 tolerated(0.3) benign(0.111) TCGA-EE-A182-06 1 226835002 226835002 C T ITPKB Missense_Mutation p.M704I 0.34 deleterious(0.01) benign(0.128) TCGA-EE-A182-06 1 228451914 228451914 C T OBSCN Silent p.A1745A 0.37 TCGA-EE-A182-06 1 229568806 229568806 C T ACTA1 Silent p.V19V 0.19 TCGA-EE-A182-06 1 231377107 231377107 C T GNPAT 5'UTR 0.31 TCGA-EE-A182-06 1 233394138 233394138 C T PCNXL2 Nonsense_Mutation p.W490* 0.49 TCGA-EE-A182-06 1 233489572 233489572 G A MLK4 Missense_Mutation p.E336K 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 1 233518443 233518443 G A MLK4 Missense_Mutation p.E1033K 0.56 deleterious(0.03) benign(0.11) TCGA-EE-A182-06 1 233807252 233807252 C T KCNK1 Silent p.C329C 0.16 TCGA-EE-A182-06 1 235972340 235972340 A G LYST Missense_Mutation p.I593T 0.24 tolerated(0.61) benign(0.074) TCGA-EE-A182-06 1 240256751 240256751 G A FMN2 Missense_Mutation p.E448K 0.25 unknown(0) TCGA-EE-A182-06 1 240370999 240370999 G A FMN2 Missense_Mutation p.G963S 0.28 unknown(0) TCGA-EE-A182-06 1 241099902 241099902 G A RGS7 Nonsense_Mutation p.Q111* 0.32 TCGA-EE-A182-06 1 24402672 24402672 G A MYOM3 Missense_Mutation p.P893L 0.22 deleterious(0) probably_damaging(0.963) TCGA-EE-A182-06 1 244217611 244217611 C T ZBTB18 Silent p.L179L 0.16 TCGA-EE-A182-06 1 24434504 24434504 G A MYOM3 Missense_Mutation p.T74M 0.34 tolerated(0.06) benign(0.237) TCGA-EE-A182-06 1 24448010 24448010 G A IL22RA1 Missense_Mutation p.P337L 0.30 tolerated(0.23) benign(0.008) TCGA-EE-A182-06 1 245850315 245850315 T A KIF26B Missense_Mutation p.S1344T 0.74 deleterious(0.01) unknown(0) TCGA-EE-A182-06 1 245850316 245850316 C T KIF26B Missense_Mutation p.S1344F 0.74 deleterious(0.04) unknown(0) TCGA-EE-A182-06 1 247769028 247769028 C T OR2G3 Silent p.I47I 0.23 TCGA-EE-A182-06 1 247875979 247875979 G A OR6F1 Missense_Mutation p.L27F 0.21 tolerated(0.06) possibly_damaging(0.452) TCGA-EE-A182-06 1 247902395 247902395 G A OR14K1 Missense_Mutation p.G160E 0.26 tolerated(0.12) possibly_damaging(0.455) TCGA-EE-A182-06 1 247978971 247978971 T C OR14A16 Missense_Mutation p.M21V 0.23 deleterious(0.05) benign(0) TCGA-EE-A182-06 1 248308623 248308623 C T OR2M5 Silent p.P58P 0.45 TCGA-EE-A182-06 1 248616209 248616209 G A OR2T2 Silent p.V37V 0.13 TCGA-EE-A182-06 1 248616210 248616210 G A OR2T2 Missense_Mutation p.V38M 0.13 tolerated(0.69) probably_damaging(0.997) TCGA-EE-A182-06 1 248756757 248756757 G A OR2T10 Silent p.L105L 0.56 TCGA-EE-A182-06 1 25679392 25679392 C T TMEM50A Silent p.F98F 0.21 TCGA-EE-A182-06 1 26664929 26664929 G A AIM1L Silent p.P254P 0.25 TCGA-EE-A182-06 1 26769298 26769298 C T DHDDS Missense_Mutation p.S86F 0.33 deleterious(0) probably_damaging(0.979) TCGA-EE-A182-06 1 27706366 27706366 G A CD164L2 3'UTR 0.20 TCGA-EE-A182-06 1 27720803 27720803 G A GPR3 Silent p.L167L 0.32 TCGA-EE-A182-06 1 29028969 29028969 C T GMEB1 Silent p.A216A 0.24 TCGA-EE-A182-06 1 29040629 29040629 C T GMEB1 Missense_Mutation p.H356Y 0.30 tolerated(1) benign(0.029) TCGA-EE-A182-06 1 31896635 31896635 C T SERINC2 Silent p.F54F 0.28 TCGA-EE-A182-06 1 32207058 32207058 G A BAI2 Silent p.L570L 0.31 TCGA-EE-A182-06 1 32259361 32259361 C T SPOCD1 Missense_Mutation p.E841K 0.29 tolerated(0.08) benign(0.043) TCGA-EE-A182-06 1 32502640 32502640 C T KHDRBS1 Missense_Mutation p.P301S 0.36 tolerated(0.25) benign(0.017) TCGA-EE-A182-06 1 33583722 33583722 G A ADC Intron 0.28 TCGA-EE-A182-06 1 33625345 33625345 C T TRIM62 Silent p.R235R 0.45 TCGA-EE-A182-06 1 34038265 34038265 G A CSMD2 Missense_Mutation p.P2537S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A182-06 1 34182076 34182076 G A CSMD2 Silent p.F969F 0.19 TCGA-EE-A182-06 1 34286101 34286101 C T CSMD2 Missense_Mutation p.E350K 0.27 tolerated(0.09) benign(0.322) TCGA-EE-A182-06 1 34330328 34330328 G A HMGB4 Missense_Mutation p.R179K 0.25 tolerated(0.47) benign(0.001) TCGA-EE-A182-06 1 35223641 35223641 C T GJB5 Missense_Mutation p.S237F 0.34 tolerated(0.06) benign(0.001) TCGA-EE-A182-06 1 35260571 35260571 G A GJA4 Missense_Mutation p.G253S 0.28 tolerated(0.31) benign(0.002) TCGA-EE-A182-06 1 36181741 36181741 G A C1orf216 Missense_Mutation p.S61F 0.28 tolerated(0.08) benign(0.01) TCGA-EE-A182-06 1 38025064 38025064 C T DNALI1 Missense_Mutation p.P144S 0.39 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A182-06 1 38027169 38027169 C T DNALI1 Missense_Mutation p.R159W 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 1 38453276 38453276 A G SF3A3 Missense_Mutation p.I91T 0.26 deleterious(0.03) benign(0.202) TCGA-EE-A182-06 1 40204555 40204555 G A PPIE 5'Flank 0.25 TCGA-EE-A182-06 1 43805033 43805033 C T MPL Silent p.I161I 0.29 TCGA-EE-A182-06 1 47282773 47282773 G T CYP4B1 Missense_Mutation p.R376L 0.28 deleterious(0) possibly_damaging(0.822) TCGA-EE-A182-06 1 47498981 47498981 C T CYP4X1 Missense_Mutation p.H145Y 0.24 deleterious(0) possibly_damaging(0.876) TCGA-EE-A182-06 1 47504382 47504382 G A CYP4X1 Missense_Mutation p.D276N 0.32 deleterious(0.05) benign(0.076) TCGA-EE-A182-06 1 47515764 47515764 G A CYP4X1 Missense_Mutation p.R483K 0.36 tolerated(0.47) benign(0.083) TCGA-EE-A182-06 1 49208377 49208377 G A BEND5 Missense_Mutation p.T271I 0.30 tolerated(0.31) benign(0.001) TCGA-EE-A182-06 1 55272741 55272741 T G C1orf177 Silent p.R59R 0.41 TCGA-EE-A182-06 1 55452017 55452017 C T TMEM61 Missense_Mutation p.S88F 0.34 deleterious(0) probably_damaging(0.983) TCGA-EE-A182-06 1 55470708 55470708 C T BSND Missense_Mutation p.P64L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 1 57415241 57415241 C T C8B Missense_Mutation p.R284Q 0.21 tolerated(0.16) benign(0.105) TCGA-EE-A182-06 1 75672358 75672358 G A SLC44A5 Silent p.F698F 0.24 TCGA-EE-A182-06 1 78034136 78034136 G A ZZZ3 Missense_Mutation p.P783S 0.36 deleterious(0.04) possibly_damaging(0.907) TCGA-EE-A182-06 1 78191348 78191348 G A USP33 Missense_Mutation p.S443L 0.36 tolerated(0.09) benign(0.012) TCGA-EE-A182-06 1 82431800 82431800 G T LPHN2 Silent p.L675L 0.25 TCGA-EE-A182-06 1 85424216 85424216 T A MCOLN2 Missense_Mutation p.N136I 0.28 deleterious(0.04) benign(0.187) TCGA-EE-A182-06 1 865651 865651 C T AL645608.1 Missense_Mutation p.G31R 0.36 tolerated_low_confidence(0.2) probably_damaging(0.98) TCGA-EE-A182-06 1 86965350 86965350 C T CLCA1 Silent p.I789I 0.31 TCGA-EE-A182-06 1 92445279 92445279 G A BRDT Missense_Mutation p.E418K 0.25 deleterious(0.03) possibly_damaging(0.636) TCGA-EE-A182-06 1 92568184 92568184 C T BTBD8 Missense_Mutation p.P168S 0.36 tolerated(0.18) benign(0.007) TCGA-EE-A182-06 1 9833398 9833398 T C CLSTN1 Missense_Mutation p.N49S 0.42 deleterious(0.02) benign(0.035) TCGA-EE-A182-06 20 10273610 10273610 G A SNAP25 Intron 0.40 TCGA-EE-A182-06 20 1164548 1164548 T C TMEM74B 5'UTR 0.50 TCGA-EE-A182-06 20 13830908 13830908 G A SEL1L2 Missense_Mutation p.H513Y 0.30 tolerated_low_confidence(0.32) benign(0.018) TCGA-EE-A182-06 20 14066288 14066288 C T MACROD2 Missense_Mutation p.S62F 0.38 tolerated(0.24) benign(0.387) TCGA-EE-A182-06 20 1532446 1532446 G A SIRPD Silent p.I104I 0.37 TCGA-EE-A182-06 20 15480430 15480430 G A MACROD2 Missense_Mutation p.E195K 0.18 tolerated(0.07) probably_damaging(0.989) TCGA-EE-A182-06 20 1629967 1629967 G A SIRPG Missense_Mutation p.T54I 0.41 deleterious(0.03) benign(0.184) TCGA-EE-A182-06 20 18377153 18377153 A G DZANK1 Missense_Mutation p.V525A 0.27 deleterious(0) probably_damaging(0.948) TCGA-EE-A182-06 20 20028529 20028529 C T CRNKL1 Missense_Mutation p.A329T 0.30 tolerated(0.19) benign(0.056) TCGA-EE-A182-06 20 23420962 23420962 G A CSTL1 Missense_Mutation p.A20T 0.36 tolerated(0.1) benign(0.326) TCGA-EE-A182-06 20 23421109 23421109 C T CSTL1 Nonsense_Mutation p.R69* 0.39 TCGA-EE-A182-06 20 26084174 26084174 C T NCOR1P1 RNA 0.19 TCGA-EE-A182-06 20 2644629 2644629 G A IDH3B Missense_Mutation p.P20L 0.15 tolerated(0.3) benign(0) TCGA-EE-A182-06 20 35176481 35176481 C T MYL9 Silent p.A77A 0.22 TCGA-EE-A182-06 20 35396435 35396435 C T DSN1 Silent p.R122R 0.37 TCGA-EE-A182-06 20 35443545 35443545 A G SOGA1 Missense_Mutation p.L767P 0.27 tolerated(0.12) possibly_damaging(0.685) TCGA-EE-A182-06 20 37154084 37154084 G A RALGAPB Missense_Mutation p.E609K 0.23 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A182-06 20 39980535 39980535 A T LPIN3 Missense_Mutation p.N393Y 0.26 tolerated(0.15) benign(0.125) TCGA-EE-A182-06 20 39981294 39981294 C T LPIN3 Missense_Mutation p.P471L 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A182-06 20 40727112 40727112 G A PTPRT Silent p.F1265F 0.32 TCGA-EE-A182-06 20 41408889 41408889 C T PTPRT Silent p.V179V 0.32 TCGA-EE-A182-06 20 41419868 41419868 G A PTPRT Silent p.L151L 0.26 TCGA-EE-A182-06 20 43837241 43837241 G A SEMG1 Missense_Mutation p.D435N 0.29 tolerated(1) benign(0.001) TCGA-EE-A182-06 20 43850574 43850574 G A SEMG2 Missense_Mutation p.G101S 0.23 tolerated(0.25) possibly_damaging(0.841) TCGA-EE-A182-06 20 44314548 44314548 C T WFDC10B Intron 0.20 TCGA-EE-A182-06 20 44639169 44639169 C T MMP9 Missense_Mutation p.A140V 0.27 tolerated(0.13) possibly_damaging(0.866) TCGA-EE-A182-06 20 44664487 44664487 C T SLC12A5 Silent p.F140F 0.24 TCGA-EE-A182-06 20 45354929 45354929 C T SLC2A10 Silent p.V418V 0.26 TCGA-EE-A182-06 20 46264370 46264370 C T NCOA3 Missense_Mutation p.L473F 0.29 deleterious(0.05) possibly_damaging(0.603) TCGA-EE-A182-06 20 49204371 49204371 C T FAM65C Missense_Mutation p.R903Q 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 20 49218800 49218800 G A FAM65C Missense_Mutation p.H486Y 0.29 tolerated(0.26) benign(0.002) TCGA-EE-A182-06 20 52645374 52645374 G A BCAS1 Missense_Mutation p.R94C 0.29 deleterious(0) probably_damaging(0.959) TCGA-EE-A182-06 20 61512356 61512356 G A DIDO1 Missense_Mutation p.S1651L 0.37 benign(0.001) TCGA-EE-A182-06 20 61595008 61595008 C T SLC17A9 Silent p.F266F 0.33 TCGA-EE-A182-06 20 62127295 62127295 A G EEF1A2 Missense_Mutation p.F80L 0.32 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-EE-A182-06 20 62194489 62194489 G A HELZ2 Silent p.L1896L 0.50 TCGA-EE-A182-06 20 62197209 62197209 G A HELZ2 Missense_Mutation p.A989V 0.19 tolerated(0.21) benign(0.15) TCGA-EE-A182-06 20 62221454 62221454 G C GMEB2 Missense_Mutation p.H527Q 0.19 tolerated_low_confidence(0.52) benign(0.001) TCGA-EE-A182-06 20 62598119 62598119 G A ZNF512B Missense_Mutation p.R137C 0.36 deleterious(0) probably_damaging(0.991) TCGA-EE-A182-06 20 826356 826356 C T FAM110A 3'UTR 0.33 TCGA-EE-A182-06 20 8713986 8713986 C T PLCB1 Missense_Mutation p.P664S 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A182-06 20 9391683 9391683 G A PLCB4 Splice_Site p.X655_splice 0.15 TCGA-EE-A182-06 20 9400458 9400458 C T PLCB4 Missense_Mutation p.L674F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 20 9520058 9520058 G A PAK7 3'UTR 0.27 TCGA-EE-A182-06 21 10971338 10971338 G A TPTE Missense_Mutation p.P7S 0.14 deleterious_low_confidence(0.04) benign(0.008) TCGA-EE-A182-06 21 11038742 11038742 G A BAGE2 RNA 0.08 TCGA-EE-A182-06 21 27840743 27840743 C T CYYR1 3'UTR 0.37 TCGA-EE-A182-06 21 30698572 30698572 A C BACH1 Missense_Mutation p.K143Q 0.34 deleterious(0.01) possibly_damaging(0.69) TCGA-EE-A182-06 21 31045476 31045476 G A GRIK1 Missense_Mutation p.R185C 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 21 33749602 33749602 G A URB1 Intron 0.22 TCGA-EE-A182-06 21 34003737 34003737 G A SYNJ1 Silent p.F1469F 0.33 TCGA-EE-A182-06 21 34860505 34860505 G A DNAJC28 3'Flank 0.41 TCGA-EE-A182-06 21 35237482 35237482 C G ITSN1 Silent p.S1306S 0.38 TCGA-EE-A182-06 21 35893613 35893613 T C RCAN1 Intron 0.55 TCGA-EE-A182-06 21 37744705 37744705 C T MORC3 Missense_Mutation p.R848C 0.29 tolerated(0.08) possibly_damaging(0.462) TCGA-EE-A182-06 21 40574346 40574346 G A BRWD1 Missense_Mutation p.S1497F 0.25 tolerated(0.36) benign(0.009) TCGA-EE-A182-06 21 43716492 43716492 C G ABCG1 Missense_Mutation p.A676G 0.20 tolerated(0.06) benign(0.006) TCGA-EE-A182-06 21 45949687 45949687 G A TSPEAR Missense_Mutation p.P262S 0.16 tolerated(0.19) benign(0.035) TCGA-EE-A182-06 21 46057600 46057600 C T KRTAP10-10 Missense_Mutation p.P89L 0.28 deleterious(0.02) benign(0) TCGA-EE-A182-06 21 47531982 47531982 C T COL6A2 Missense_Mutation p.H69Y 0.25 deleterious(0.04) possibly_damaging(0.877) TCGA-EE-A182-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.08 TCGA-EE-A182-06 22 16448901 16448901 G A OR11H1 Missense_Mutation p.P302S 0.33 deleterious(0.02) possibly_damaging(0.882) TCGA-EE-A182-06 22 17619575 17619575 G A CECR5 Missense_Mutation p.T267M 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A182-06 22 18082825 18082825 G A ATP6V1E1 Missense_Mutation p.R135C 0.30 tolerated(0.06) benign(0.004) TCGA-EE-A182-06 22 19865655 19865655 G A TXNRD2 Missense_Mutation p.P468L 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 22 20132776 20132776 C T ZDHHC8 Intron 0.26 TCGA-EE-A182-06 22 21989287 21989287 C T CCDC116 Missense_Mutation p.A312V 0.26 tolerated(0.09) possibly_damaging(0.603) TCGA-EE-A182-06 22 22930894 22930894 C T IGLV2-33 Missense_Mutation p.S30F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A182-06 22 23651651 23651651 C T BCR Missense_Mutation p.T1018I 0.23 tolerated(0.07) benign(0.009) TCGA-EE-A182-06 22 23657640 23657640 C T BCR Silent p.F1249F 0.27 TCGA-EE-A182-06 22 24579589 24579589 C T SUSD2 Silent p.F138F 0.21 TCGA-EE-A182-06 22 24938932 24938932 G A GUCD1 3'UTR 0.36 TCGA-EE-A182-06 22 25251015 25251015 C T SGSM1 Missense_Mutation p.L170F 0.38 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A182-06 22 25294301 25294301 C T SGSM1 Silent p.F850F 0.24 TCGA-EE-A182-06 22 26400779 26400779 C T MYO18B Missense_Mutation p.P2143L 0.25 tolerated(0.08) benign(0.281) TCGA-EE-A182-06 22 29656592 29656592 G A RHBDD3 Missense_Mutation p.P236S 0.33 tolerated(0.33) benign(0.014) TCGA-EE-A182-06 22 29684726 29684726 C T EWSR1 Missense_Mutation p.R315C 0.29 tolerated(0.12) unknown(0) TCGA-EE-A182-06 22 30660378 30660378 C T OSM Missense_Mutation p.E85K 0.33 deleterious(0.02) benign(0.146) TCGA-EE-A182-06 22 30864642 30864642 G A SEC14L3 Silent p.D92D 0.32 TCGA-EE-A182-06 22 32439338 32439338 C T SLC5A1 Missense_Mutation p.R24C 0.29 tolerated(0.15) possibly_damaging(0.582) TCGA-EE-A182-06 22 35719851 35719851 C T TOM1 Silent p.L198L 0.33 TCGA-EE-A182-06 22 36692960 36692960 G A MYH9 Silent p.L1067L 0.37 TCGA-EE-A182-06 22 38823280 38823280 G A KCNJ4 Silent p.I286I 0.32 TCGA-EE-A182-06 22 39123256 39123256 T G GTPBP1 Silent p.V480V 0.33 TCGA-EE-A182-06 22 39884071 39884071 C T MGAT3 Missense_Mutation p.S240F 0.26 deleterious(0) possibly_damaging(0.833) TCGA-EE-A182-06 22 40140033 40140033 C T ENTHD1 Missense_Mutation p.G492E 0.20 tolerated(1) benign(0) TCGA-EE-A182-06 22 40140246 40140246 G A ENTHD1 Missense_Mutation p.S421F 0.24 deleterious(0.04) benign(0.1) TCGA-EE-A182-06 22 41513565 41513565 C G EP300 Missense_Mutation p.P157A 0.24 unknown(0) TCGA-EE-A182-06 22 41513566 41513566 C T EP300 Missense_Mutation p.P157L 0.26 unknown(0) TCGA-EE-A182-06 22 42415351 42415351 C T WBP2NL Silent p.F33F 0.30 TCGA-EE-A182-06 22 44127674 44127674 T C EFCAB6 Missense_Mutation p.N221S 0.31 tolerated(0.39) benign(0.028) TCGA-EE-A182-06 22 44280191 44280191 C T PNPLA5 Silent p.R328R 0.21 TCGA-EE-A182-06 22 45279175 45279175 C T PHF21B Missense_Mutation p.E463K 0.21 tolerated(0.06) possibly_damaging(0.872) TCGA-EE-A182-06 22 50552093 50552093 C T MOV10L1 Missense_Mutation p.H254Y 0.31 deleterious(0.04) benign(0) TCGA-EE-A182-06 22 50658708 50658708 G A TUBGCP6 Silent p.T1360T 0.26 TCGA-EE-A182-06 2 100050810 100050810 G A REV1 Silent p.I474I 0.33 TCGA-EE-A182-06 2 102486842 102486842 A G MAP4K4 Missense_Mutation p.T828A 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.616) TCGA-EE-A182-06 2 105896936 105896936 A G TGFBRAP1 Missense_Mutation p.Y456H 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 107042458 107042458 G A RGPD3 Missense_Mutation p.P898S 0.19 deleterious(0.04) possibly_damaging(0.702) TCGA-EE-A182-06 2 108488609 108488609 G A RGPD4 Silent p.K1383K 0.24 TCGA-EE-A182-06 2 11364448 11364448 C T ROCK2 Missense_Mutation p.R336K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 2 113676413 113676413 C T IL37 3'UTR 0.24 TCGA-EE-A182-06 2 11389844 11389844 G A ROCK2 Silent p.A135A 0.29 TCGA-EE-A182-06 2 113993093 113993093 G A PAX8 Missense_Mutation p.S322F 0.24 deleterious(0.01) possibly_damaging(0.605) TCGA-EE-A182-06 2 114195359 114195359 G A CBWD2 5'UTR 0.33 TCGA-EE-A182-06 2 116101467 116101467 C T DPP10 Missense_Mutation p.P88S 0.29 deleterious(0) possibly_damaging(0.742) TCGA-EE-A182-06 2 119732105 119732105 G A MARCO Missense_Mutation p.G193R 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 2 121107281 121107281 C T INHBB Missense_Mutation p.T352M 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 121995273 121995273 G A TFCP2L1 Missense_Mutation p.S310L 0.24 tolerated(0.07) probably_damaging(0.978) TCGA-EE-A182-06 2 130785890 130785890 C T FAR2P1 RNA 0.13 TCGA-EE-A182-06 2 130832596 130832596 C T POTEF Missense_Mutation p.E817K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-EE-A182-06 2 130832987 130832987 C T POTEF Silent p.R686R 0.28 TCGA-EE-A182-06 2 131130753 131130753 C T PTPN18 Missense_Mutation p.P447S 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 132509121 132509121 C T C2orf27A 5'UTR 0.28 TCGA-EE-A182-06 2 133541515 133541515 C T NCKAP5 Missense_Mutation p.E957K 0.41 tolerated(0.25) benign(0.033) TCGA-EE-A182-06 2 135741291 135741291 G A MAP3K19 Silent p.I1059I 0.24 TCGA-EE-A182-06 2 135960445 135960445 G A ZRANB3 Missense_Mutation p.S1033F 0.21 deleterious(0.01) benign(0.25) TCGA-EE-A182-06 2 136566146 136566146 C T LCT Silent p.L1257L 0.28 TCGA-EE-A182-06 2 136566496 136566496 C T LCT Missense_Mutation p.E1141K 0.40 tolerated(0.2) possibly_damaging(0.474) TCGA-EE-A182-06 2 136567491 136567491 G A LCT Missense_Mutation p.S809F 0.22 tolerated(0.09) benign(0.033) TCGA-EE-A182-06 2 137990487 137990487 C T THSD7B Missense_Mutation p.P645L 0.28 tolerated(0.09) possibly_damaging(0.851) TCGA-EE-A182-06 2 138163337 138163337 G A THSD7B Silent p.T885T 0.32 TCGA-EE-A182-06 2 138169219 138169219 T C THSD7B Silent p.L912L 0.33 TCGA-EE-A182-06 2 138208496 138208496 C T THSD7B Missense_Mutation p.S1014L 0.21 deleterious(0.04) unknown(0) TCGA-EE-A182-06 2 138208556 138208556 G A THSD7B Missense_Mutation p.G1034E 0.36 deleterious(0.02) unknown(0) TCGA-EE-A182-06 2 141032006 141032006 C T LRP1B Missense_Mutation p.D4377N 0.24 possibly_damaging(0.539) TCGA-EE-A182-06 2 141208193 141208193 C T LRP1B Nonsense_Mutation p.W3334* 0.23 TCGA-EE-A182-06 2 141773430 141773430 C T LRP1B Silent p.R675R 0.28 TCGA-EE-A182-06 2 141819748 141819748 C T LRP1B Missense_Mutation p.E370K 0.27 benign(0.292) TCGA-EE-A182-06 2 141986902 141986902 C T LRP1B Missense_Mutation p.E234K 0.22 benign(0.292) TCGA-EE-A182-06 2 149227601 149227601 C T MBD5 Missense_Mutation p.P697S 0.32 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A182-06 2 1499897 1499897 C T TPO Missense_Mutation p.P715S 0.26 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A182-06 2 152320385 152320385 C T RIF1 Missense_Mutation p.L1451F 0.27 tolerated(0.71) benign(0.009) TCGA-EE-A182-06 2 152432773 152432773 G A NEB Silent p.I5600I 0.36 TCGA-EE-A182-06 2 152566275 152566275 C T NEB Silent p.R310R 0.24 TCGA-EE-A182-06 2 162273129 162273129 G T TBR1 Missense_Mutation p.D70Y 0.29 deleterious(0.02) possibly_damaging(0.452) TCGA-EE-A182-06 2 162661004 162661004 G A SLC4A10 Missense_Mutation p.R59K 0.21 tolerated(0.06) benign(0.164) TCGA-EE-A182-06 2 165404212 165404212 G A GRB14 Missense_Mutation p.H147Y 0.26 deleterious(0.01) benign(0.407) TCGA-EE-A182-06 2 165551044 165551044 G A COBLL1 Missense_Mutation p.P991L 0.29 deleterious(0.02) probably_damaging(0.92) TCGA-EE-A182-06 2 165952981 165952981 C T SCN3A Missense_Mutation p.R1430Q 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A182-06 2 166198926 166198926 G A SCN2A Missense_Mutation p.E837K 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 2 166806199 166806199 G A TTC21B Silent p.F19F 0.32 TCGA-EE-A182-06 2 167056272 167056272 C T SCN9A Missense_Mutation p.G1615E 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A182-06 2 167108409 167108409 C T SCN9A Intron 0.22 TCGA-EE-A182-06 2 167262984 167262984 A C SCN7A Silent p.L1385L 0.17 TCGA-EE-A182-06 2 167760257 167760257 G A XIRP2 Missense_Mutation p.E89K 0.33 benign(0.302) TCGA-EE-A182-06 2 168106072 168106072 G A XIRP2 Missense_Mutation p.E2724K 0.20 benign(0.019) TCGA-EE-A182-06 2 168106365 168106365 A G XIRP2 Silent p.K2821K 0.23 TCGA-EE-A182-06 2 169989179 169989179 C T LRP2 Missense_Mutation p.E4545K 0.34 benign(0.01) TCGA-EE-A182-06 2 170090079 170090079 G A LRP2 Missense_Mutation p.A1647V 0.35 benign(0.272) TCGA-EE-A182-06 2 171248994 171248994 T C MYO3B Missense_Mutation p.F594L 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A182-06 2 171699207 171699207 C T GAD1 Intron 0.47 TCGA-EE-A182-06 2 171804874 171804874 C T GORASP2 Silent p.S26S 0.25 TCGA-EE-A182-06 2 173782587 173782587 G A RAPGEF4 Missense_Mutation p.G168S 0.29 deleterious(0.03) benign(0.035) TCGA-EE-A182-06 2 179432379 179432379 T C TTN Silent p.E26160E 0.30 TCGA-EE-A182-06 2 179439256 179439256 C T TTN Missense_Mutation p.R23868Q 0.29 TCGA-EE-A182-06 2 179516677 179516677 C T TTN Missense_Mutation p.E13105K 0.27 TCGA-EE-A182-06 2 179526498 179526498 G A TTN Missense_Mutation p.P12425S 0.26 TCGA-EE-A182-06 2 179560116 179560116 G A TTN Missense_Mutation p.P10410L 0.21 TCGA-EE-A182-06 2 179572409 179572409 C T TTN Missense_Mutation p.E9629K 0.35 TCGA-EE-A182-06 2 179589255 179589255 G A TTN Silent p.V6949V 0.30 TCGA-EE-A182-06 2 179596678 179596678 C T TTN Missense_Mutation p.E5642K 0.31 TCGA-EE-A182-06 2 179597410 179597410 C T TTN Missense_Mutation p.D5460N 0.29 TCGA-EE-A182-06 2 179597750 179597750 G A TTN Missense_Mutation p.P5385S 0.28 TCGA-EE-A182-06 2 179602934 179602934 C T TTN Missense_Mutation p.R4749Q 0.29 TCGA-EE-A182-06 2 179612600 179612600 G A TTN Intron 0.27 TCGA-EE-A182-06 2 179612918 179612918 G A TTN Intron 0.21 TCGA-EE-A182-06 2 179622510 179622510 C T TTN Silent p.G3479G 0.21 TCGA-EE-A182-06 2 179631139 179631139 C T TTN Silent p.R3224R 0.35 TCGA-EE-A182-06 2 179640850 179640850 G A TTN Missense_Mutation p.A1914V 0.38 TCGA-EE-A182-06 2 179641767 179641767 T C TTN Silent p.G1608G 0.34 TCGA-EE-A182-06 2 179642112 179642112 G A TTN Intron 0.27 TCGA-EE-A182-06 2 180634320 180634320 C T ZNF385B Missense_Mutation p.G55S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 183095762 183095762 C T PDE1A Missense_Mutation p.D188N 0.17 tolerated(0.25) probably_damaging(0.944) TCGA-EE-A182-06 2 187626570 187626570 C T FAM171B Silent p.L501L 0.38 TCGA-EE-A182-06 2 18767584 18767584 G A NT5C1B Missense_Mutation p.S125F 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A182-06 2 188210982 188210982 C T CALCRL Missense_Mutation p.E439K 0.18 deleterious(0) benign(0.328) TCGA-EE-A182-06 2 188223828 188223828 G A CALCRL Missense_Mutation p.L291F 0.36 deleterious(0) benign(0.241) TCGA-EE-A182-06 2 189910627 189910627 G A COL5A2 Missense_Mutation p.R1070C 0.24 unknown(0) TCGA-EE-A182-06 2 190531889 190531889 C T ASNSD1 Missense_Mutation p.P344L 0.27 deleterious(0) probably_damaging(0.994) TCGA-EE-A182-06 2 1914070 1914070 C T MYT1L Missense_Mutation p.E585K 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 2 192701153 192701153 C T SDPR Silent p.L258L 0.19 TCGA-EE-A182-06 2 196545581 196545581 T C SLC39A10 Missense_Mutation p.V272A 0.23 tolerated(0.78) benign(0) TCGA-EE-A182-06 2 196728872 196728872 C T DNAH7 Splice_Site p.X2502_splice 0.38 TCGA-EE-A182-06 2 196728875 196728875 G A DNAH7 Nonsense_Mutation p.Q2502* 0.33 TCGA-EE-A182-06 2 196774856 196774856 C T DNAH7 Silent p.G1333G 0.32 TCGA-EE-A182-06 2 196825381 196825381 C T DNAH7 Missense_Mutation p.E832K 0.33 tolerated(0.25) probably_damaging(0.976) TCGA-EE-A182-06 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.35 deleterious(0) possibly_damaging(0.846) TCGA-EE-A182-06 2 20114007 20114007 G A WDR35 Silent p.I1062I 0.33 TCGA-EE-A182-06 2 201503014 201503014 G A AOX1 Missense_Mutation p.G853R 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A182-06 2 201503015 201503015 G A AOX1 Missense_Mutation p.G853E 0.33 deleterious(0.02) probably_damaging(0.956) TCGA-EE-A182-06 2 201718044 201718044 C T CLK1 Silent p.L522L 0.22 TCGA-EE-A182-06 2 202025549 202025549 C T CFLAR Silent p.H396H 0.24 TCGA-EE-A182-06 2 202900493 202900493 G A FZD7 Missense_Mutation p.E375K 0.24 deleterious(0.04) probably_damaging(0.946) TCGA-EE-A182-06 2 208611847 208611847 C T CCNYL1 Missense_Mutation p.A188V 0.34 deleterious(0) possibly_damaging(0.603) TCGA-EE-A182-06 2 209203253 209203253 C T PIKFYVE Missense_Mutation p.P1545S 0.21 tolerated(0.19) benign(0.119) TCGA-EE-A182-06 2 210561449 210561449 G A MAP2 Missense_Mutation p.R1455K 0.26 tolerated(0.09) possibly_damaging(0.759) TCGA-EE-A182-06 2 21229833 21229833 C T APOB Missense_Mutation p.E3303K 0.27 benign(0.02) TCGA-EE-A182-06 2 21231384 21231384 C T APOB Missense_Mutation p.E2786K 0.31 benign(0) TCGA-EE-A182-06 2 21245703 21245703 C T APOB Missense_Mutation p.G939D 0.30 benign(0.038) TCGA-EE-A182-06 2 21249823 21249823 C T APOB Missense_Mutation p.G694E 0.32 probably_damaging(1) TCGA-EE-A182-06 2 216197147 216197147 T C ATIC Missense_Mutation p.L244S 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A182-06 2 217543705 217543705 G A IGFBP5 Silent p.S145S 0.25 TCGA-EE-A182-06 2 218713465 218713465 G A TNS1 Missense_Mutation p.P467L 0.22 tolerated(0.06) benign(0.004) TCGA-EE-A182-06 2 219299275 219299275 G A VIL1 Silent p.L509L 0.30 TCGA-EE-A182-06 2 220116755 220116755 A C TUBA4A Missense_Mutation p.F67L 0.36 tolerated_low_confidence(0.07) benign(0.182) TCGA-EE-A182-06 2 220146473 220146473 G T DNAJB2 Missense_Mutation p.R70L 0.22 deleterious(0) possibly_damaging(0.711) TCGA-EE-A182-06 2 220396587 220396587 C T ASIC4 Silent p.I357I 0.34 TCGA-EE-A182-06 2 220409514 220409514 G A TMEM198 Nonsense_Mutation p.W22* 0.32 TCGA-EE-A182-06 2 220440116 220440116 G A INHA Silent p.G323G 0.33 TCGA-EE-A182-06 2 225681370 225681370 G A DOCK10 Missense_Mutation p.P1110S 0.24 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A182-06 2 227860297 227860297 C T RHBDD1 3'UTR 0.27 TCGA-EE-A182-06 2 228195367 228195367 C G MFF Missense_Mutation p.P22A 0.24 tolerated(0.14) probably_damaging(0.953) TCGA-EE-A182-06 2 228881246 228881246 C T SPHKAP Missense_Mutation p.E1442K 0.30 tolerated(0.1) benign(0.032) TCGA-EE-A182-06 2 228881890 228881890 G A SPHKAP Missense_Mutation p.S1227F 0.37 deleterious(0.01) benign(0.043) TCGA-EE-A182-06 2 228883860 228883860 G A SPHKAP Silent p.V570V 0.23 TCGA-EE-A182-06 2 234637841 234637841 G A UGT1A3 Silent p.Q23Q 0.38 TCGA-EE-A182-06 2 234669540 234669540 C T UGT1A8 Intron 0.20 TCGA-EE-A182-06 2 234678180 234678180 G A UGT1A10 Intron 0.38 TCGA-EE-A182-06 2 234851238 234851238 G A TRPM8 Missense_Mutation p.G182E 0.23 deleterious(0) probably_damaging(0.989) TCGA-EE-A182-06 2 236957847 236957847 C T AGAP1 Missense_Mutation p.S679F 0.28 deleterious(0.02) benign(0.038) TCGA-EE-A182-06 2 237489138 237489138 G A ACKR3 Silent p.E10E 0.27 TCGA-EE-A182-06 2 238243470 238243470 C T COL6A3 Missense_Mutation p.E3010K 0.33 unknown(0) TCGA-EE-A182-06 2 238285478 238285478 C T COL6A3 Missense_Mutation p.G1003R 0.25 probably_damaging(0.995) TCGA-EE-A182-06 2 241685220 241685220 G A KIF1A Silent p.F1103F 0.27 TCGA-EE-A182-06 2 242524126 242524126 G A THAP4 Silent p.F543F 0.31 TCGA-EE-A182-06 2 242814397 242814397 C T CXXC11 Silent p.L230L 0.22 TCGA-EE-A182-06 2 25965059 25965059 G A ASXL2 Missense_Mutation p.P1383S 0.20 tolerated(0.18) probably_damaging(1) TCGA-EE-A182-06 2 25973192 25973192 G A ASXL2 Silent p.S411S 0.27 TCGA-EE-A182-06 2 25973193 25973193 G A ASXL2 Missense_Mutation p.S411F 0.27 deleterious(0.04) benign(0.197) TCGA-EE-A182-06 2 26693463 26693463 C T OTOF Missense_Mutation p.E1341K 0.38 tolerated(0.33) probably_damaging(0.998) TCGA-EE-A182-06 2 27880321 27880321 A G SUPT7L Missense_Mutation p.F212S 0.23 tolerated(0.07) possibly_damaging(0.575) TCGA-EE-A182-06 2 28748155 28748155 G A PLB1 Missense_Mutation p.D89N 0.40 tolerated(0.45) benign(0.001) TCGA-EE-A182-06 2 29016845 29016845 T C PPP1CB Silent p.T287T 0.28 TCGA-EE-A182-06 2 29296596 29296596 C T C2orf71 Missense_Mutation p.E178K 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A182-06 2 29498005 29498005 C T ALK Silent p.G667G 0.31 TCGA-EE-A182-06 2 32474961 32474961 C T NLRC4 Missense_Mutation p.E658K 0.22 tolerated(0.29) benign(0.015) TCGA-EE-A182-06 2 32832604 32832604 C T BIRC6 Missense_Mutation p.P4718L 0.33 probably_damaging(0.996) TCGA-EE-A182-06 2 33740208 33740208 G A RASGRP3 Missense_Mutation p.G2E 0.32 tolerated(0.09) probably_damaging(0.972) TCGA-EE-A182-06 2 42578308 42578308 G A COX7A2L 3'UTR 0.40 TCGA-EE-A182-06 2 43451460 43451460 A T ZFP36L2 Nonstop_Mutation p.*495Rext*81 0.30 TCGA-EE-A182-06 2 44001199 44001199 C T DYNC2LI1 5'UTR 0.35 TCGA-EE-A182-06 2 44001200 44001200 C T DYNC2LI1 5'UTR 0.35 TCGA-EE-A182-06 2 44573430 44573430 C T PREPL Missense_Mutation p.E107K 0.27 tolerated(0.8) benign(0.155) TCGA-EE-A182-06 2 46850910 46850910 C T CRIPT Missense_Mutation p.P49S 0.32 deleterious(0) possibly_damaging(0.764) TCGA-EE-A182-06 2 48869597 48869597 G A STON1-GTF2A1L Splice_Site p.X805_splice 0.36 TCGA-EE-A182-06 2 56216086 56216086 C T MIR216A RNA 0.28 TCGA-EE-A182-06 2 60687865 60687865 G A BCL11A Missense_Mutation p.P728S 0.29 tolerated(0.16) possibly_damaging(0.641) TCGA-EE-A182-06 2 68384813 68384813 C T WDR92 5'Flank 0.28 TCGA-EE-A182-06 2 71778824 71778824 C T DYSF Missense_Mutation p.P594S 0.15 tolerated(0.88) benign(0.003) TCGA-EE-A182-06 2 71825771 71825771 G A DYSF Missense_Mutation p.D1218N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 71895908 71895908 C T DYSF Silent p.L1828L 0.34 TCGA-EE-A182-06 2 72723613 72723613 T C EXOC6B Silent p.Q471Q 0.19 TCGA-EE-A182-06 2 74462281 74462281 C T SLC4A5 Missense_Mutation p.D794N 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 2 74709906 74709906 C T CCDC142 Missense_Mutation p.R20K 0.19 tolerated_low_confidence(0.41) benign(0.092) TCGA-EE-A182-06 2 79253148 79253148 G A REG3G 5'UTR 0.58 TCGA-EE-A182-06 2 85262196 85262196 C T KCMF1 Missense_Mutation p.P81L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 86265830 86265830 C T POLR1A Missense_Mutation p.E1343K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 2 87085511 87085511 C T CD8B Silent p.Q24Q 0.24 TCGA-EE-A182-06 2 87201259 87201259 C T RGPD1 Missense_Mutation p.S438L 0.14 tolerated(0.8) benign(0.013) TCGA-EE-A182-06 2 88125213 88125213 G A RGPD2 Silent p.L12L 0.40 TCGA-EE-A182-06 2 89292187 89292187 G A IGKV1-8 Missense_Mutation p.S29F 0.27 deleterious(0.01) benign(0.231) TCGA-EE-A182-06 2 90260185 90260185 C T IGKV1D-8 Silent p.T96T 0.28 TCGA-EE-A182-06 2 9490987 9490987 C T ASAP2 Silent p.T358T 0.26 TCGA-EE-A182-06 2 96798415 96798415 G A ASTL Silent p.S167S 0.24 TCGA-EE-A182-06 2 97526700 97526700 G A SEMA4C Missense_Mutation p.P722L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A182-06 2 97526701 97526701 G A SEMA4C Missense_Mutation p.P722S 0.31 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A182-06 2 99861749 99861749 C T LYG2 Silent p.R119R 0.19 TCGA-EE-A182-06 3 101370483 101370483 C T ZBTB11 Missense_Mutation p.D897N 0.38 tolerated(0.09) probably_damaging(1) TCGA-EE-A182-06 3 102175104 102175104 G A ZPLD1 Missense_Mutation p.G148E 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 3 108076945 108076945 G A HHLA2 Missense_Mutation p.E314K 0.09 tolerated(0.06) possibly_damaging(0.501) TCGA-EE-A182-06 3 108135742 108135742 G A MYH15 Silent p.L1309L 0.22 TCGA-EE-A182-06 3 108475996 108475996 G A RETNLB Missense_Mutation p.P13S 0.51 tolerated(0.7) benign(0.004) TCGA-EE-A182-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.44 deleterious(0) possibly_damaging(0.906) TCGA-EE-A182-06 3 110852551 110852551 T C PVRL3 Missense_Mutation p.L380P 0.23 deleterious(0.04) benign(0.267) TCGA-EE-A182-06 3 111996694 111996694 G A SLC9C1 Missense_Mutation p.S111L 0.15 deleterious(0.02) benign(0.078) TCGA-EE-A182-06 3 113858383 113858383 A C DRD3 Missense_Mutation p.S229R 0.23 tolerated(0.13) benign(0.222) TCGA-EE-A182-06 3 119528944 119528944 C T NR1I2 Silent p.P117P 0.28 TCGA-EE-A182-06 3 119887107 119887107 G A GPR156 Missense_Mutation p.P406L 0.55 tolerated(0.66) benign(0.023) TCGA-EE-A182-06 3 119887108 119887108 G A GPR156 Missense_Mutation p.P406S 0.56 tolerated(0.43) benign(0.021) TCGA-EE-A182-06 3 121256010 121256010 C T POLQ Missense_Mutation p.R226Q 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 3 121350723 121350723 G A HCLS1 Silent p.F477F 0.44 TCGA-EE-A182-06 3 121591510 121591510 C T EAF2 Missense_Mutation p.S204F 0.18 tolerated(0.08) benign(0.01) TCGA-EE-A182-06 3 121822475 121822475 G A CD86 Missense_Mutation p.E61K 0.51 tolerated(0.49) benign(0.063) TCGA-EE-A182-06 3 121972964 121972964 C T CASR 5'UTR 0.23 TCGA-EE-A182-06 3 121980863 121980863 C T CASR Silent p.I327I 0.30 TCGA-EE-A182-06 3 122004096 122004096 G A CASR 3'UTR 0.27 TCGA-EE-A182-06 3 122353914 122353914 G A PARP15 Silent p.K540K 0.16 TCGA-EE-A182-06 3 122414467 122414467 C T PARP14 Missense_Mutation p.P265S 0.35 deleterious(0.02) possibly_damaging(0.792) TCGA-EE-A182-06 3 123008708 123008708 C T ADCY5 Missense_Mutation p.D1141N 0.22 tolerated(0.1) probably_damaging(0.954) TCGA-EE-A182-06 3 123987692 123987692 G A KALRN Missense_Mutation p.E185K 0.35 deleterious(0.03) benign(0.432) TCGA-EE-A182-06 3 12458487 12458487 C T PPARG Silent p.L368L 0.29 TCGA-EE-A182-06 3 12545207 12545207 G A TSEN2 Missense_Mutation p.G252E 0.25 tolerated(1) benign(0.004) TCGA-EE-A182-06 3 129290360 129290360 C T PLXND1 Missense_Mutation p.E1110K 0.50 tolerated(0.3) benign(0.014) TCGA-EE-A182-06 3 130748605 130748605 C T NEK11 Missense_Mutation p.S18F 0.37 deleterious(0.01) possibly_damaging(0.59) TCGA-EE-A182-06 3 130873927 130873927 G A NEK11 Silent p.L308L 0.32 TCGA-EE-A182-06 3 131624125 131624125 G A CPNE4 Missense_Mutation p.H55Y 0.25 tolerated(0.05) possibly_damaging(0.5) TCGA-EE-A182-06 3 132172289 132172289 G A DNAJC13 Missense_Mutation p.D229N 0.34 deleterious(0.01) benign(0.03) TCGA-EE-A182-06 3 132438567 132438567 T C NPHP3 Silent p.K167K 0.24 TCGA-EE-A182-06 3 133475778 133475778 C T TF Silent p.V265V 0.21 TCGA-EE-A182-06 3 133478170 133478170 C T TF Silent p.I400I 0.46 TCGA-EE-A182-06 3 13367352 13367352 G A NUP210 Silent p.A1529A 0.30 TCGA-EE-A182-06 3 135720944 135720944 C T PPP2R3A Missense_Mutation p.L202F 0.18 tolerated_low_confidence(0.06) benign(0.012) TCGA-EE-A182-06 3 142430861 142430861 G A PLS1 3'UTR 0.13 TCGA-EE-A182-06 3 142840619 142840619 C T CHST2 Missense_Mutation p.P321S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 3 14565975 14565975 C T GRIP2 RNA 0.45 TCGA-EE-A182-06 3 147113820 147113820 G A ZIC4 Silent p.A219A 0.17 TCGA-EE-A182-06 3 148596485 148596485 C T CPA3 Missense_Mutation p.R142C 0.37 deleterious(0) benign(0.144) TCGA-EE-A182-06 3 150127378 150127378 C T TSC22D2 Missense_Mutation p.P81S 0.20 deleterious(0.02) possibly_damaging(0.582) TCGA-EE-A182-06 3 150127379 150127379 C T TSC22D2 Missense_Mutation p.P81L 0.20 tolerated(0.24) benign(0.033) TCGA-EE-A182-06 3 150911423 150911423 A G MED12L Silent p.L705L 0.42 TCGA-EE-A182-06 3 151156282 151156282 C T IGSF10 Missense_Mutation p.G2023R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 3 15116339 15116339 G A ZFYVE20 Silent p.A435A 0.26 TCGA-EE-A182-06 3 151166011 151166011 G A IGSF10 Silent p.F586F 0.26 TCGA-EE-A182-06 3 151475038 151475038 C T AADACL2 Missense_Mutation p.P288S 0.22 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A182-06 3 151599352 151599352 G A SUCNR1 3'UTR 0.14 TCGA-EE-A182-06 3 154055547 154055547 C T GPR149 Missense_Mutation p.E713K 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 3 154139180 154139180 G A GPR149 Missense_Mutation p.S424F 0.26 deleterious(0.05) benign(0.041) TCGA-EE-A182-06 3 155212159 155212159 G A PLCH1 Missense_Mutation p.P669L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 3 164785148 164785148 C T SI Silent p.R205R 0.21 TCGA-EE-A182-06 3 164786619 164786619 C T SI Missense_Mutation p.G125E 0.19 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A182-06 3 164906576 164906576 C T SLITRK3 Silent p.R681R 0.50 TCGA-EE-A182-06 3 166960300 166960300 C T ZBBX Missense_Mutation p.E796K 0.48 deleterious(0.02) possibly_damaging(0.713) TCGA-EE-A182-06 3 167016198 167016198 G A ZBBX Nonsense_Mutation p.Q592* 0.17 TCGA-EE-A182-06 3 167196724 167196724 C T WDR49 Missense_Mutation p.R679Q 0.21 tolerated(0.38) benign(0.015) TCGA-EE-A182-06 3 169644401 169644401 G A SAMD7 Silent p.K117K 0.26 TCGA-EE-A182-06 3 169644946 169644946 C T SAMD7 Missense_Mutation p.P299L 0.23 deleterious(0.01) possibly_damaging(0.536) TCGA-EE-A182-06 3 169988339 169988339 C T PRKCI Missense_Mutation p.S194F 0.19 tolerated(0.29) benign(0.033) TCGA-EE-A182-06 3 172476767 172476767 C T ECT2 Intron 0.11 TCGA-EE-A182-06 3 180319960 180319960 C T TTC14 5'UTR 0.33 TCGA-EE-A182-06 3 183245701 183245701 A T KLHL6 Missense_Mutation p.Y131N 0.50 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A182-06 3 184026631 184026631 C T PSMD2 Silent p.L894L 0.41 TCGA-EE-A182-06 3 184041377 184041377 C T EIF4G1 Missense_Mutation p.T764I 0.16 deleterious(0) probably_damaging(0.963) TCGA-EE-A182-06 3 184060569 184060569 C T FAM131A Silent p.L182L 0.21 TCGA-EE-A182-06 3 186293723 186293723 C T DNAJB11 Missense_Mutation p.S107L 0.32 tolerated(0.14) benign(0.015) TCGA-EE-A182-06 3 186387769 186387769 G A HRG Missense_Mutation p.E115K 0.41 tolerated(0.27) benign(0.292) TCGA-EE-A182-06 3 186395141 186395141 C T HRG Silent p.L349L 0.47 TCGA-EE-A182-06 3 189455613 189455613 C T TP63 Silent p.F49F 0.43 TCGA-EE-A182-06 3 194062955 194062955 G A CPN2 Silent p.A159A 0.53 TCGA-EE-A182-06 3 195605354 195605354 C T TNK2 Missense_Mutation p.R438K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 3 19575020 19575020 C T KCNH8 Missense_Mutation p.S918F 0.28 tolerated_low_confidence(0.13) possibly_damaging(0.549) TCGA-EE-A182-06 3 195968946 195968946 G A PCYT1A Missense_Mutation p.T194I 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 3 196533475 196533475 C T PAK2 Missense_Mutation p.P165L 0.32 tolerated(0.09) benign(0) TCGA-EE-A182-06 3 197557648 197557648 G A LRCH3 Missense_Mutation p.E299K 0.24 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A182-06 3 21462713 21462713 G A ZNF385D Missense_Mutation p.P394L 0.22 deleterious(0) probably_damaging(0.981) TCGA-EE-A182-06 3 26751914 26751914 G A LRRC3B Missense_Mutation p.E251K 0.25 deleterious(0.02) possibly_damaging(0.859) TCGA-EE-A182-06 3 28476714 28476714 C T ZCWPW2 Missense_Mutation p.S149L 0.26 deleterious(0.03) possibly_damaging(0.608) TCGA-EE-A182-06 3 2928874 2928874 G A CNTN4 Silent p.G302G 0.19 TCGA-EE-A182-06 3 30713629 30713629 G A TGFBR2 Silent p.G343G 0.35 TCGA-EE-A182-06 3 30891538 30891538 C T GADL1 Missense_Mutation p.E201K 0.50 tolerated(0.71) benign(0.043) TCGA-EE-A182-06 3 30891550 30891550 G A GADL1 Missense_Mutation p.P197S 0.15 deleterious(0.02) probably_damaging(1) TCGA-EE-A182-06 3 36897228 36897228 C T TRANK1 Missense_Mutation p.E1285K 0.30 deleterious(0) probably_damaging(0.972) TCGA-EE-A182-06 3 36897937 36897937 C T TRANK1 Silent p.K1048K 0.24 TCGA-EE-A182-06 3 38104270 38104270 C T DLEC1 Nonsense_Mutation p.Q358* 0.19 TCGA-EE-A182-06 3 382569 382569 C T CHL1 Missense_Mutation p.P160S 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A182-06 3 38592513 38592513 C T SCN5A Missense_Mutation p.E1784K 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A182-06 3 38739746 38739746 G A SCN10A Silent p.F1655F 0.29 TCGA-EE-A182-06 3 38791583 38791583 G A SCN10A Silent p.I616I 0.24 TCGA-EE-A182-06 3 38908887 38908887 G A SCN11A Silent p.I1292I 0.32 TCGA-EE-A182-06 3 38908899 38908899 G A SCN11A Silent p.F1288F 0.19 TCGA-EE-A182-06 3 38912214 38912214 C T SCN11A Missense_Mutation p.D1261N 0.22 deleterious(0.03) benign(0.134) TCGA-EE-A182-06 3 391095 391095 G A CHL1 Missense_Mutation p.R301K 0.50 tolerated(0.27) benign(0.011) TCGA-EE-A182-06 3 42916467 42916467 C T CYP8B1 Nonsense_Mutation p.W281* 0.32 TCGA-EE-A182-06 3 43122913 43122913 G A POMGNT2 Missense_Mutation p.S4L 0.31 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A182-06 3 44449140 44449140 C T TCAIM Missense_Mutation p.P486L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 3 44952563 44952563 G A TGM4 Missense_Mutation p.E574K 0.25 deleterious(0.01) benign(0.177) TCGA-EE-A182-06 3 45046796 45046796 C T EXOSC7 Nonsense_Mutation p.R169* 0.33 TCGA-EE-A182-06 3 45127448 45127448 G A CDCP1 Silent p.S731S 0.25 TCGA-EE-A182-06 3 45801376 45801376 C T SLC6A20 Silent p.L534L 0.37 TCGA-EE-A182-06 3 46244743 46244743 C T CCR1 Silent p.G354G 0.23 TCGA-EE-A182-06 3 46399689 46399689 G A CCR2 Missense_Mutation p.G224E 0.33 tolerated(0.18) benign(0.055) TCGA-EE-A182-06 3 46399826 46399826 G A CCR2 Missense_Mutation p.E270K 0.29 tolerated(0.3) benign(0.034) TCGA-EE-A182-06 3 4716799 4716799 C T ITPR1 Silent p.F867F 0.17 TCGA-EE-A182-06 3 48677414 48677414 C T CELSR3 Missense_Mutation p.E3202K 0.30 deleterious_low_confidence(0.01) benign(0.16) TCGA-EE-A182-06 3 48677415 48677415 C T CELSR3 Silent p.R3201R 0.28 TCGA-EE-A182-06 3 49149153 49149153 A G USP19 Silent p.G997G 0.22 TCGA-EE-A182-06 3 49150050 49150050 G A USP19 Missense_Mutation p.R838C 0.33 tolerated(0.05) possibly_damaging(0.532) TCGA-EE-A182-06 3 49692992 49692992 C T BSN Silent p.I2001I 0.24 TCGA-EE-A182-06 3 49723577 49723577 G A MST1 Silent p.P355P 0.33 TCGA-EE-A182-06 3 52404799 52404799 T C DNAH1 Silent p.S2161S 0.33 TCGA-EE-A182-06 3 52420831 52420831 C T DNAH1 Missense_Mutation p.P2989S 0.31 probably_damaging(0.969) TCGA-EE-A182-06 3 52563336 52563337 - G NT5DC2 Frame_Shift_Ins p.E83Rfs*21 0.31 TCGA-EE-A182-06 3 56627593 56627593 C T CCDC66 Silent p.F381F 0.31 TCGA-EE-A182-06 3 62259508 62259508 A T PTPRG Nonsense_Mutation p.K1152* 0.25 TCGA-EE-A182-06 3 64635416 64635416 G A ADAMTS9 Missense_Mutation p.S501F 0.24 tolerated(0.1) benign(0.166) TCGA-EE-A182-06 3 68055647 68055647 C T FAM19A1 Intron 0.38 TCGA-EE-A182-06 3 68466547 68466547 G A FAM19A1 Missense_Mutation p.R79K 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A182-06 3 68802049 68802049 G A FAM19A4 Missense_Mutation p.A84V 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 3 72799687 72799687 G A SHQ1 Silent p.P494P 0.21 TCGA-EE-A182-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.26 deleterious(0) possibly_damaging(0.85) TCGA-EE-A182-06 3 89390143 89390143 G A EPHA3 Missense_Mutation p.E298K 0.34 tolerated(0.58) benign(0.13) TCGA-EE-A182-06 3 9074387 9074387 G A SRGAP3 Missense_Mutation p.L496F 0.36 tolerated(0.7) benign(0.085) TCGA-EE-A182-06 3 97311571 97311571 G A EPHA6 Silent p.R834R 0.14 TCGA-EE-A182-06 3 97731240 97731240 C T GABRR3 RNA 0.12 TCGA-EE-A182-06 3 98002453 98002453 A T OR5H2 Missense_Mutation p.K241I 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 3 98002605 98002605 C T OR5H2 Missense_Mutation p.P292S 0.13 deleterious(0.01) possibly_damaging(0.696) TCGA-EE-A182-06 3 98188564 98188564 G A OR5K1 Silent p.L48L 0.21 TCGA-EE-A182-06 3 98189280 98189280 C T OR5K1 Missense_Mutation p.P287L 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 4 100057638 100057638 C T ADH4 Silent p.G187G 0.21 TCGA-EE-A182-06 4 100134872 100134872 C T ADH6 Missense_Mutation p.M51I 0.35 tolerated(0.4) benign(0.002) TCGA-EE-A182-06 4 100137326 100137326 G A ADH6 Missense_Mutation p.R38C 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A182-06 4 100232727 100232727 G A ADH1B Silent p.N305N 0.29 TCGA-EE-A182-06 4 100261800 100261800 G A ADH1C Missense_Mutation p.S299F 0.32 possibly_damaging(0.836) TCGA-EE-A182-06 4 103723739 103723739 G A UBE2D3 Silent p.D61D 0.38 TCGA-EE-A182-06 4 106848586 106848586 G A NPNT Splice_Site p.X89_splice 0.17 TCGA-EE-A182-06 4 106861357 106861357 C T NPNT Nonsense_Mutation p.Q241* 0.23 TCGA-EE-A182-06 4 119736660 119736660 G A SEC24D Nonsense_Mutation p.Q207* 0.33 TCGA-EE-A182-06 4 123192757 123192757 C T KIAA1109 Missense_Mutation p.S2693L 0.33 probably_damaging(0.989) TCGA-EE-A182-06 4 126373565 126373565 G A FAT4 Silent p.V3798V 0.31 TCGA-EE-A182-06 4 126384816 126384816 C T FAT4 Missense_Mutation p.P3965S 0.36 benign(0) TCGA-EE-A182-06 4 126411760 126411760 G A FAT4 Missense_Mutation p.E4595K 0.31 probably_damaging(0.987) TCGA-EE-A182-06 4 128651756 128651756 C T SLC25A31 Missense_Mutation p.S19F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 4 128864936 128864936 A G MFSD8 Missense_Mutation p.V137A 0.24 tolerated(0.46) benign(0.003) TCGA-EE-A182-06 4 13338968 13338968 G A HSP90AB2P RNA 0.34 TCGA-EE-A182-06 4 13621619 13621619 G A BOD1L1 Missense_Mutation p.P106S 0.22 probably_damaging(1) TCGA-EE-A182-06 4 138450971 138450971 C T PCDH18 Missense_Mutation p.D758N 0.30 deleterious(0) probably_damaging(0.98) TCGA-EE-A182-06 4 138452127 138452127 C T PCDH18 Silent p.G372G 0.34 TCGA-EE-A182-06 4 141313412 141313412 C T CLGN Missense_Mutation p.E538K 0.26 tolerated(0.16) benign(0.424) TCGA-EE-A182-06 4 145039905 145039905 C T GYPA Missense_Mutation p.G78E 0.27 deleterious(0.02) probably_damaging(1) TCGA-EE-A182-06 4 145567906 145567906 G A HHIP Missense_Mutation p.E27K 0.24 deleterious_low_confidence(0.03) benign(0.019) TCGA-EE-A182-06 4 148887936 148887936 G A ARHGAP10 Missense_Mutation p.M554I 0.28 deleterious(0.02) benign(0.004) TCGA-EE-A182-06 4 151604791 151604791 G A LRBA Missense_Mutation p.R1945C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 4 152069133 152069133 G A SH3D19 Nonsense_Mutation p.Q395* 0.21 TCGA-EE-A182-06 4 155157007 155157007 C T DCHS2 Missense_Mutation p.G2478R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 4 155157406 155157406 G A DCHS2 Missense_Mutation p.P2345S 0.27 tolerated(0.32) possibly_damaging(0.874) TCGA-EE-A182-06 4 155507595 155507595 C T FGA Missense_Mutation p.G329E 0.38 tolerated_low_confidence(0.05) benign(0.143) TCGA-EE-A182-06 4 156716567 156716567 G A GUCY1B3 Silent p.G267G 0.30 TCGA-EE-A182-06 4 15717353 15717353 C T BST1 Missense_Mutation p.P212L 0.29 tolerated(0.52) probably_damaging(1) TCGA-EE-A182-06 4 158057699 158057699 G A GLRB Missense_Mutation p.D126N 0.29 deleterious(0.02) benign(0.329) TCGA-EE-A182-06 4 164393468 164393468 G A TKTL2 Silent p.F473F 0.34 TCGA-EE-A182-06 4 164393562 164393562 C T TKTL2 Missense_Mutation p.R442Q 0.34 deleterious(0.03) probably_damaging(1) TCGA-EE-A182-06 4 164534687 164534687 G A MARCH1 Intron 0.18 TCGA-EE-A182-06 4 169292858 169292858 C T DDX60L Nonsense_Mutation p.W1611* 0.45 TCGA-EE-A182-06 4 171010790 171010790 G A AADAT Missense_Mutation p.P18S 0.29 deleterious(0.04) benign(0.044) TCGA-EE-A182-06 4 175898067 175898067 T C ADAM29 Missense_Mutation p.L464P 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 4 177142701 177142701 G A ASB5 Silent p.S145S 0.26 TCGA-EE-A182-06 4 183674626 183674626 T A TENM3 Missense_Mutation p.L1296I 0.29 tolerated(0.18) possibly_damaging(0.636) TCGA-EE-A182-06 4 183717912 183717912 G A TENM3 Missense_Mutation p.D2446N 0.33 tolerated(0.55) possibly_damaging(0.811) TCGA-EE-A182-06 4 187093158 187093158 C T FAM149A 3'UTR 0.29 TCGA-EE-A182-06 4 187173248 187173248 C T KLKB1 Silent p.L408L 0.33 TCGA-EE-A182-06 4 189013014 189013014 C T TRIML2 Missense_Mutation p.G226E 0.33 tolerated(0.08) benign(0.173) TCGA-EE-A182-06 4 2083449 2083449 C T POLN Missense_Mutation p.G740D 0.17 deleterious(0.02) probably_damaging(1) TCGA-EE-A182-06 4 21305468 21305468 A T KCNIP4 Intron 0.29 TCGA-EE-A182-06 4 23815460 23815460 T A PPARGC1A Missense_Mutation p.D549V 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.889) TCGA-EE-A182-06 4 23815461 23815461 C T PPARGC1A Missense_Mutation p.D549N 0.33 tolerated_low_confidence(0.67) possibly_damaging(0.87) TCGA-EE-A182-06 4 25664129 25664129 C T SLC34A2 Missense_Mutation p.P3S 0.33 tolerated_low_confidence(0.1) benign(0.333) TCGA-EE-A182-06 4 25677928 25677928 G A SLC34A2 Missense_Mutation p.V544M 0.38 deleterious(0.03) possibly_damaging(0.698) TCGA-EE-A182-06 4 38117331 38117331 G A TBC1D1 Missense_Mutation p.G853E 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 4 39064637 39064637 C T KLHL5 Missense_Mutation p.S168F 0.31 deleterious_low_confidence(0.02) benign(0.143) TCGA-EE-A182-06 4 40763260 40763260 C T NSUN7 Missense_Mutation p.L144F 0.34 tolerated(0.18) benign(0.003) TCGA-EE-A182-06 4 40778152 40778152 G A NSUN7 Nonsense_Mutation p.W304* 0.28 TCGA-EE-A182-06 4 41984415 41984415 A G DCAF4L1 Silent p.A202A 0.36 TCGA-EE-A182-06 4 42119643 42119643 C T BEND4 Silent p.A499A 0.44 TCGA-EE-A182-06 4 42145655 42145655 G A BEND4 Silent p.L282L 0.38 TCGA-EE-A182-06 4 42448649 42448649 C T ATP8A1 Missense_Mutation p.G970E 0.24 tolerated(0.44) benign(0.003) TCGA-EE-A182-06 4 46060539 46060539 C T GABRG1 Silent p.G242G 0.24 TCGA-EE-A182-06 4 47663828 47663828 C T CORIN Silent p.G545G 0.35 TCGA-EE-A182-06 4 47857177 47857177 G A NFXL1 Missense_Mutation p.P774S 0.25 tolerated(0.34) benign(0.013) TCGA-EE-A182-06 4 49032892 49032892 G A CWH43 Missense_Mutation p.G475R 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A182-06 4 52943113 52943113 C T SPATA18 Silent p.S309S 0.35 TCGA-EE-A182-06 4 55593610 55593610 T C KIT Missense_Mutation p.V559A 0.27 deleterious(0) probably_damaging(0.912) TCGA-EE-A182-06 4 55964401 55964401 G A KDR Silent p.I804I 0.32 TCGA-EE-A182-06 4 56878146 56878146 C T CEP135 Nonsense_Mutation p.Q933* 0.31 TCGA-EE-A182-06 4 57318118 57318118 C T PAICS Silent p.I291I 0.20 TCGA-EE-A182-06 4 5868472 5868472 G A CRMP1 Silent p.L131L 0.25 TCGA-EE-A182-06 4 59328 59328 C T ZNF595 Silent p.L3L 0.07 TCGA-EE-A182-06 4 62363066 62363066 G A LPHN3 Missense_Mutation p.A19T 0.25 deleterious(0.02) benign(0.004) TCGA-EE-A182-06 4 65175598 65175598 G A TECRL Silent p.T201T 0.26 TCGA-EE-A182-06 4 657903 657903 G A PDE6B Silent p.K674K 0.36 TCGA-EE-A182-06 4 68708278 68708278 C T TMPRSS11D Silent p.L105L 0.27 TCGA-EE-A182-06 4 69433737 69433737 G A UGT2B17 Missense_Mutation p.P156S 0.63 deleterious(0.05) possibly_damaging(0.742) TCGA-EE-A182-06 4 69682277 69682277 A G UGT2B10 Silent p.E180E 0.26 TCGA-EE-A182-06 4 70359453 70359453 G A UGT2B4 Silent p.F276F 0.31 TCGA-EE-A182-06 4 70361377 70361377 C T UGT2B4 Missense_Mutation p.S68N 0.39 tolerated(0.25) benign(0.001) TCGA-EE-A182-06 4 7056043 7056043 C T TADA2B Silent p.I175I 0.37 TCGA-EE-A182-06 4 71508414 71508414 C T ENAM Missense_Mutation p.P424L 0.31 tolerated(0.29) benign(0.003) TCGA-EE-A182-06 4 71510227 71510227 C T ENAM Silent p.S1028S 0.33 TCGA-EE-A182-06 4 72622450 72622450 C T GC Missense_Mutation p.G357E 0.17 tolerated(1) benign(0.005) TCGA-EE-A182-06 4 72994359 72994359 G A NPFFR2 Nonsense_Mutation p.W119* 0.33 TCGA-EE-A182-06 4 73003829 73003829 T A NPFFR2 Missense_Mutation p.F236Y 0.26 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A182-06 4 74275124 74275124 C T ALB Missense_Mutation p.L179F 0.21 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A182-06 4 74283322 74283322 G A ALB Missense_Mutation p.G455E 0.29 tolerated(0.13) probably_damaging(0.949) TCGA-EE-A182-06 4 74352808 74352808 C T AFM Nonsense_Mutation p.Q203* 0.26 TCGA-EE-A182-06 4 74354356 74354356 G A AFM Silent p.A241A 0.26 TCGA-EE-A182-06 4 75938248 75938248 A T PARM1 Missense_Mutation p.K219N 0.27 tolerated(0.26) benign(0.007) TCGA-EE-A182-06 4 7787987 7787987 G A AFAP1 Silent p.S488S 0.33 TCGA-EE-A182-06 4 78697486 78697486 G A CNOT6L Silent p.I22I 0.30 TCGA-EE-A182-06 4 79371446 79371446 C T FRAS1 Missense_Mutation p.S2139F 0.31 possibly_damaging(0.841) TCGA-EE-A182-06 4 7985003 7985003 C T ABLIM2 Silent p.R604R 0.33 TCGA-EE-A182-06 4 8009775 8009775 G A ABLIM2 Intron 0.29 TCGA-EE-A182-06 4 8009875 8009875 G A ABLIM2 Missense_Mutation p.S510F 0.33 deleterious(0) possibly_damaging(0.689) TCGA-EE-A182-06 4 81207613 81207613 C T FGF5 Silent p.A198A 0.24 TCGA-EE-A182-06 4 8229590 8229590 C T SH3TC1 Silent p.P723P 0.29 TCGA-EE-A182-06 4 8229591 8229591 C T SH3TC1 Missense_Mutation p.H724Y 0.28 tolerated(0.05) benign(0.056) TCGA-EE-A182-06 4 8239372 8239372 G A SH3TC1 Missense_Mutation p.G1243D 0.24 deleterious(0) probably_damaging(0.99) TCGA-EE-A182-06 4 88532040 88532040 T A DSPP 5'UTR 0.29 TCGA-EE-A182-06 5 101813514 101813514 G A SLCO6A1 Missense_Mutation p.S223L 0.31 tolerated(0.26) benign(0.176) TCGA-EE-A182-06 5 111066701 111066701 C T NREP Missense_Mutation p.D86N 0.34 tolerated(0.27) benign(0.056) TCGA-EE-A182-06 5 112222717 112222717 T A REEP5 Missense_Mutation p.K172I 0.29 deleterious(0) possibly_damaging(0.786) TCGA-EE-A182-06 5 113822788 113822788 A T KCNN2 Silent p.L432L 0.37 TCGA-EE-A182-06 5 118969720 118969720 G A FAM170A Missense_Mutation p.G93R 0.26 tolerated(0.28) benign(0.057) TCGA-EE-A182-06 5 121188103 121188103 G A FTMT Missense_Mutation p.E149K 0.27 deleterious(0.01) benign(0.072) TCGA-EE-A182-06 5 121188466 121188466 C T FTMT 3'UTR 0.41 TCGA-EE-A182-06 5 121739548 121739548 G A SNCAIP Missense_Mutation p.E40K 0.29 deleterious(0.01) benign(0.359) TCGA-EE-A182-06 5 126792946 126792946 C T MEGF10 Missense_Mutation p.S1120L 0.32 deleterious(0) benign(0.051) TCGA-EE-A182-06 5 127645087 127645087 C T FBN2 Missense_Mutation p.M1735I 0.23 tolerated(0.07) benign(0.094) TCGA-EE-A182-06 5 128365365 128365365 C T SLC27A6 Missense_Mutation p.P550S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 5 131006312 131006312 G T FNIP1 Silent p.I984I 0.28 TCGA-EE-A182-06 5 132087726 132087726 C T SEPT8 Nonsense_Mutation p.W478* 0.25 TCGA-EE-A182-06 5 132199880 132199880 G A GDF9 Missense_Mutation p.L116F 0.23 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 5 132267893 132267893 T G AFF4 Missense_Mutation p.S314R 0.22 deleterious(0) benign(0.08) TCGA-EE-A182-06 5 1339087 1339087 G A CLPTM1L Silent p.L163L 0.28 TCGA-EE-A182-06 5 135397195 135397195 G A TGFBI Missense_Mutation p.R638K 0.19 tolerated(1) benign(0.001) TCGA-EE-A182-06 5 137235267 137235267 G A PKD2L2 Missense_Mutation p.R196Q 0.30 tolerated(0.09) benign(0.009) TCGA-EE-A182-06 5 13862836 13862836 C T DNAH5 Silent p.V1539V 0.45 TCGA-EE-A182-06 5 140166584 140166584 G A PCDHA1 Missense_Mutation p.D237N 0.34 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-EE-A182-06 5 140182681 140182681 G A PCDHA3 Silent p.T633T 0.38 TCGA-EE-A182-06 5 140202883 140202883 C T PCDHA5 Missense_Mutation p.S508L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.647) TCGA-EE-A182-06 5 140227913 140227913 G A PCDHA9 5'UTR 0.29 TCGA-EE-A182-06 5 140432487 140432487 G A PCDHB1 Missense_Mutation p.D478N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 5 140433112 140433112 C T PCDHB1 Missense_Mutation p.P686L 0.24 tolerated(0.18) benign(0.099) TCGA-EE-A182-06 5 140475757 140475757 C T PCDHB2 Silent p.F461F 0.17 TCGA-EE-A182-06 5 140476750 140476750 G A PCDHB2 Silent p.R792R 0.37 TCGA-EE-A182-06 5 140480581 140480581 C T PCDHB3 Silent p.F116F 0.45 TCGA-EE-A182-06 5 140515463 140515463 G A PCDHB5 Silent p.G149G 0.36 TCGA-EE-A182-06 5 140594388 140594388 C T PCDHB13 Silent p.I231I 0.26 TCGA-EE-A182-06 5 140751569 140751569 C T PCDHGB3 Silent p.D536D 0.27 TCGA-EE-A182-06 5 140903738 140903738 T C DIAPH1 Silent p.A1211A 0.32 TCGA-EE-A182-06 5 142593624 142593624 C T ARHGAP26 Missense_Mutation p.S776L 0.27 deleterious(0) possibly_damaging(0.905) TCGA-EE-A182-06 5 143586533 143586533 C T KCTD16 Silent p.L86L 0.37 TCGA-EE-A182-06 5 147900490 147900490 G A HTR4 Intron 0.24 TCGA-EE-A182-06 5 148754032 148754032 G A IL17B Missense_Mutation p.P148L 0.32 tolerated(0.06) probably_damaging(0.995) TCGA-EE-A182-06 5 1494882 1494882 G A LPCAT1 Silent p.I142I 0.31 TCGA-EE-A182-06 5 149497194 149497194 G A PDGFRB Missense_Mutation p.P1042S 0.19 tolerated(1) benign(0.024) TCGA-EE-A182-06 5 149497198 149497198 A C PDGFRB Silent p.G1040G 0.20 TCGA-EE-A182-06 5 149676816 149676816 G A ARSI Silent p.F557F 0.30 TCGA-EE-A182-06 5 149918882 149918882 C T NDST1 Silent p.N510N 0.25 TCGA-EE-A182-06 5 150095183 150095183 A G DCTN4 Silent p.D378D 0.31 TCGA-EE-A182-06 5 150310464 150310464 G A ZNF300P1 RNA 0.24 TCGA-EE-A182-06 5 151047122 151047122 G A SPARC Missense_Mutation p.P164L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 5 151234728 151234728 C T GLRA1 Silent p.T190T 0.28 TCGA-EE-A182-06 5 154395111 154395111 A G KIF4B Silent p.L564L 0.33 TCGA-EE-A182-06 5 154395498 154395498 C T KIF4B Silent p.F693F 0.23 TCGA-EE-A182-06 5 156479463 156479463 C T HAVCR1 Silent p.T194T 0.24 TCGA-EE-A182-06 5 156522378 156522378 G A HAVCR2 Silent p.I205I 0.25 TCGA-EE-A182-06 5 156915373 156915373 T C ADAM19 Missense_Mutation p.N817S 0.36 tolerated(0.89) benign(0.003) TCGA-EE-A182-06 5 156946990 156946990 G A ADAM19 Missense_Mutation p.P153S 0.34 tolerated(0.31) benign(0.053) TCGA-EE-A182-06 5 157078397 157078397 G C SOX30 Silent p.P230P 0.21 TCGA-EE-A182-06 5 159437713 159437713 G A TTC1 Missense_Mutation p.E60K 0.39 tolerated(0.08) benign(0.168) TCGA-EE-A182-06 5 160757921 160757921 T C GABRB2 Missense_Mutation p.N349S 0.32 tolerated(0.22) benign(0.009) TCGA-EE-A182-06 5 161113261 161113261 G A GABRA6 Missense_Mutation p.E22K 0.31 tolerated_low_confidence(1) benign(0) TCGA-EE-A182-06 5 167589726 167589726 G A TENM2 Missense_Mutation p.E845K 0.29 deleterious(0) possibly_damaging(0.852) TCGA-EE-A182-06 5 172324007 172324007 T C ERGIC1 Missense_Mutation p.S29P 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 5 172324008 172324008 C T ERGIC1 Missense_Mutation p.S29F 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 5 172324009 172324009 C T ERGIC1 Silent p.S29S 0.30 TCGA-EE-A182-06 5 172517682 172517682 C T CREBRF Missense_Mutation p.P167L 0.34 tolerated_low_confidence(0.19) benign(0.22) TCGA-EE-A182-06 5 175722211 175722211 C A SIMC1 Missense_Mutation p.S103Y 0.15 tolerated(0.27) probably_damaging(0.987) TCGA-EE-A182-06 5 176305340 176305340 C T UNC5A Silent p.S655S 0.44 TCGA-EE-A182-06 5 176471521 176471521 C T ZNF346 Silent p.S168S 0.20 TCGA-EE-A182-06 5 176524653 176524653 C T FGFR4 Silent p.P795P 0.55 TCGA-EE-A182-06 5 178392621 178392621 C T ZNF454 Missense_Mutation p.H406Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 5 179302127 179302127 G A TBC1D9B Missense_Mutation p.S654L 0.28 tolerated(0.42) benign(0.426) TCGA-EE-A182-06 5 179996161 179996161 C T CNOT6 Missense_Mutation p.A360V 0.16 tolerated(0.17) benign(0.192) TCGA-EE-A182-06 5 180432688 180432688 G A BTNL3 Missense_Mutation p.R406Q 0.23 tolerated(0.16) benign(0.107) TCGA-EE-A182-06 5 180622589 180622589 C T TRIM7 Silent p.Q371Q 0.20 TCGA-EE-A182-06 5 23522948 23522948 G A PRDM9 Missense_Mutation p.R279Q 0.19 tolerated(1) benign(0.001) TCGA-EE-A182-06 5 31472318 31472318 G A DROSHA Missense_Mutation p.S698F 0.27 deleterious(0) possibly_damaging(0.513) TCGA-EE-A182-06 5 32010572 32010572 C T PDZD2 Missense_Mutation p.S464F 0.29 tolerated(0.07) possibly_damaging(0.907) TCGA-EE-A182-06 5 33751564 33751564 G C ADAMTS12 Missense_Mutation p.I193M 0.21 tolerated(0.11) probably_damaging(0.972) TCGA-EE-A182-06 5 35065176 35065176 C T PRLR 3'UTR 0.15 TCGA-EE-A182-06 5 35763670 35763670 C T SPEF2 Missense_Mutation p.P1223S 0.33 tolerated(1) benign(0.001) TCGA-EE-A182-06 5 35873737 35873737 C T IL7R Silent p.I231I 0.18 TCGA-EE-A182-06 5 36241660 36241660 C T NADK2 Missense_Mutation p.E81K 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A182-06 5 37183116 37183116 G A C5orf42 Nonsense_Mutation p.Q1723* 0.16 TCGA-EE-A182-06 5 37201714 37201714 G A C5orf42 Silent p.P1162P 0.25 TCGA-EE-A182-06 5 38431358 38431358 G A EGFLAM Missense_Mutation p.D712N 0.20 tolerated(0.11) benign(0.163) TCGA-EE-A182-06 5 38881786 38881786 G A OSMR Missense_Mutation p.R113K 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A182-06 5 40972624 40972624 C T C7 Missense_Mutation p.P668S 0.26 tolerated(0.17) benign(0.081) TCGA-EE-A182-06 5 41061770 41061770 G A MROH2B Missense_Mutation p.P173S 0.23 tolerated(0.08) probably_damaging(0.943) TCGA-EE-A182-06 5 41176678 41176678 C T C6 Missense_Mutation p.R356Q 0.51 tolerated(0.17) benign(0.316) TCGA-EE-A182-06 5 42718672 42718672 G A GHR Missense_Mutation p.E355K 0.33 tolerated(0.06) probably_damaging(0.991) TCGA-EE-A182-06 5 42718806 42718806 C T GHR Silent p.F399F 0.35 TCGA-EE-A182-06 5 43040011 43040011 C T ANXA2R Silent p.E46E 0.25 TCGA-EE-A182-06 5 53839021 53839021 A G SNX18 Missense_Mutation p.K545R 0.31 deleterious(0.01) possibly_damaging(0.831) TCGA-EE-A182-06 5 54281315 54281315 G A ESM1 Missense_Mutation p.L11F 0.28 tolerated(0.06) possibly_damaging(0.86) TCGA-EE-A182-06 5 54327348 54327348 A C GZMK Missense_Mutation p.T174P 0.30 deleterious(0.03) benign(0.117) TCGA-EE-A182-06 5 54423134 54423134 G A CDC20B Missense_Mutation p.H314Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 5 59064174 59064174 G A PDE4D Intron 0.30 TCGA-EE-A182-06 5 64766845 64766845 G A ADAMTS6 Silent p.D74D 0.30 TCGA-EE-A182-06 5 76708041 76708041 G A PDE8B Missense_Mutation p.E565K 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 5 79034731 79034731 G A CMYA5 Silent p.E3381E 0.30 TCGA-EE-A182-06 5 79374926 79374926 C T THBS4 Missense_Mutation p.H786Y 0.29 tolerated(0.09) possibly_damaging(0.507) TCGA-EE-A182-06 5 79616892 79616892 A T SPZ1 Silent p.G286G 0.27 TCGA-EE-A182-06 5 80785071 80785071 G A SSBP2 Nonsense_Mutation p.Q144* 0.19 TCGA-EE-A182-06 5 82868369 82868369 G A VCAN Silent p.K3290K 0.27 TCGA-EE-A182-06 5 870641 870641 G A BRD9 Missense_Mutation p.S491L 0.37 deleterious(0.05) benign(0.291) TCGA-EE-A182-06 5 9063110 9063110 C T SEMA5A Missense_Mutation p.G803S 0.33 deleterious(0.05) probably_damaging(1) TCGA-EE-A182-06 5 93076823 93076823 G A POU5F2 Silent p.I149I 0.17 TCGA-EE-A182-06 5 93294641 93294641 A G FAM172A Silent p.F136F 0.33 TCGA-EE-A182-06 5 94749762 94749762 C T FAM81B Silent p.I135I 0.31 TCGA-EE-A182-06 5 94820441 94820441 G A TTC37 Missense_Mutation p.T1347I 0.21 deleterious(0.02) benign(0.01) TCGA-EE-A182-06 5 95757642 95757642 C T PCSK1 Missense_Mutation p.D188N 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 6 100368879 100368879 G A MCHR2 Silent p.I320I 0.47 TCGA-EE-A182-06 6 102516257 102516257 G A GRIK2 Silent p.R866R 0.36 TCGA-EE-A182-06 6 110746124 110746124 C T SLC22A16 Silent p.L562L 0.27 TCGA-EE-A182-06 6 110752417 110752417 G A SLC22A16 Missense_Mutation p.P493L 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 6 111982889 111982889 G A FYN 3'UTR 0.51 TCGA-EE-A182-06 6 117246749 117246749 C T RFX6 Silent p.S604S 0.41 TCGA-EE-A182-06 6 117710693 117710693 C T ROS1 Missense_Mutation p.E527K 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A182-06 6 117825019 117825044 TGCGAAAAGACAATTACAGTACCAAA - DCBLD1 Frame_Shift_Del p.C68Gfs*21 0.31 TCGA-EE-A182-06 6 127768625 127768625 G A KIAA0408 Missense_Mutation p.S280L 0.53 tolerated(0.06) benign(0.031) TCGA-EE-A182-06 6 128304414 128304414 A T PTPRK Silent p.S1126S 0.50 TCGA-EE-A182-06 6 128410983 128410983 C T PTPRK Silent p.K439K 0.44 TCGA-EE-A182-06 6 129498908 129498908 G A LAMA2 Missense_Mutation p.R455Q 0.29 tolerated(0.07) benign(0.167) TCGA-EE-A182-06 6 130381273 130381273 C T L3MBTL3 Silent p.L284L 0.45 TCGA-EE-A182-06 6 130536458 130536458 G A SAMD3 Intron 0.31 TCGA-EE-A182-06 6 132891816 132891816 C T TAAR6 Missense_Mutation p.S119F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A182-06 6 13365764 13365764 G A GFOD1 Silent p.F128F 0.31 TCGA-EE-A182-06 6 135787209 135787209 G C AHI1 Silent p.G164G 0.51 TCGA-EE-A182-06 6 139487510 139487510 G A HECA Missense_Mutation p.E121K 0.47 deleterious(0.01) possibly_damaging(0.749) TCGA-EE-A182-06 6 13977521 13977521 C T RNF182 Silent p.S57S 0.20 TCGA-EE-A182-06 6 152772238 152772238 G A SYNE1 Nonsense_Mutation p.R1044* 0.58 TCGA-EE-A182-06 6 152831444 152831444 C T SYNE1 Silent p.V155V 0.37 TCGA-EE-A182-06 6 155152088 155152088 G T SCAF8 Nonsense_Mutation p.E725* 0.31 TCGA-EE-A182-06 6 158517144 158517144 C T SYNJ2 Silent p.D1413D 0.34 TCGA-EE-A182-06 6 159644600 159644600 G A FNDC1 Silent p.R269R 0.30 TCGA-EE-A182-06 6 160328707 160328731 CGCTATGCCCATGAGACTCCTTTAC - MAS1 Frame_Shift_Del p.A241Cfs*47 0.47 TCGA-EE-A182-06 6 161032694 161032694 G A LPA Nonsense_Mutation p.R835* 0.42 TCGA-EE-A182-06 6 16327060 16327060 G A ATXN1 Silent p.V494V 0.29 TCGA-EE-A182-06 6 16328529 16328529 G A ATXN1 Nonsense_Mutation p.Q5* 0.28 TCGA-EE-A182-06 6 167790034 167790034 C T TCP10 Silent p.K192K 0.35 TCGA-EE-A182-06 6 168458000 168458000 C T FRMD1 Missense_Mutation p.G476E 0.27 tolerated(0.75) benign(0.085) TCGA-EE-A182-06 6 169648878 169648878 C T THBS2 Silent p.K81K 0.41 TCGA-EE-A182-06 6 28541289 28541289 C T SCAND3 Missense_Mutation p.E793K 0.27 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-EE-A182-06 6 28541392 28541392 C T SCAND3 Silent p.Q758Q 0.33 TCGA-EE-A182-06 6 29012117 29012117 G A OR2W1 Missense_Mutation p.T279I 0.42 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A182-06 6 29054754 29054754 G A OR2B3 Missense_Mutation p.T91I 0.29 deleterious(0.03) benign(0.091) TCGA-EE-A182-06 6 29323635 29323635 A G OR5V1 Missense_Mutation p.L113P 0.28 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A182-06 6 29556057 29556057 C T OR2H2 Silent p.L112L 0.23 TCGA-EE-A182-06 6 29639078 29639078 C T MOG Intron 0.20 TCGA-EE-A182-06 6 30166566 30166566 G A TRIM26 Silent p.H105H 0.33 TCGA-EE-A182-06 6 30863237 30863237 C T DDR1 Missense_Mutation p.P524S 0.29 tolerated(0.5) benign(0.029) TCGA-EE-A182-06 6 30879243 30879243 C T GTF2H4 Silent p.F236F 0.27 TCGA-EE-A182-06 6 30886611 30886611 G A VARS2 Silent p.E361E 0.23 TCGA-EE-A182-06 6 30920942 30920942 C T DPCR1 3'UTR 0.43 TCGA-EE-A182-06 6 31122394 31122394 G A CCHCR1 Missense_Mutation p.A227V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 6 31677886 31677886 G A LY6G6F Missense_Mutation p.G244S 0.32 tolerated(0.27) probably_damaging(0.934) TCGA-EE-A182-06 6 31753447 31753447 G A VARS Silent p.T388T 0.36 TCGA-EE-A182-06 6 31778766 31778766 C T HSPA1L Missense_Mutation p.M328I 0.32 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A182-06 6 31830596 31830596 G A NEU1 5'UTR 0.66 TCGA-EE-A182-06 6 31932030 31932030 C T SKIV2L Silent p.L628L 0.30 TCGA-EE-A182-06 6 31962039 31962039 C T C4A Missense_Mutation p.P824S 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 6 32163515 32163515 C T NOTCH4 Missense_Mutation p.G1904E 0.36 deleterious_low_confidence(0) benign(0.015) TCGA-EE-A182-06 6 32191712 32191712 G A NOTCH4 5'UTR 0.36 TCGA-EE-A182-06 6 3225029 3225029 C T TUBB2B Missense_Mutation p.E432K 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A182-06 6 33133414 33133414 G A COL11A2 Silent p.I1468I 0.34 TCGA-EE-A182-06 6 33283250 33283250 C T ZBTB22 Missense_Mutation p.G482R 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A182-06 6 33283839 33283839 G A ZBTB22 Silent p.T285T 0.72 TCGA-EE-A182-06 6 33283840 33283840 G A ZBTB22 Missense_Mutation p.T285I 0.71 tolerated(0.24) benign(0.01) TCGA-EE-A182-06 6 34026879 34026879 G A GRM4 Missense_Mutation p.A300V 0.32 tolerated(0.12) probably_damaging(0.984) TCGA-EE-A182-06 6 34256521 34256521 A G NUDT3 3'UTR 0.31 TCGA-EE-A182-06 6 34497569 34497569 G A PACSIN1 Missense_Mutation p.E247K 0.27 deleterious(0.04) possibly_damaging(0.749) TCGA-EE-A182-06 6 350753 350753 T C DUSP22 Intron 0.10 TCGA-EE-A182-06 6 35392314 35392314 T C PPARD Missense_Mutation p.V279A 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 6 35477426 35477426 C T TULP1 Missense_Mutation p.A235T 0.38 tolerated(0.12) benign(0.014) TCGA-EE-A182-06 6 36298397 36298397 G A C6orf222 Missense_Mutation p.A24V 0.60 tolerated(0.34) possibly_damaging(0.866) TCGA-EE-A182-06 6 37452896 37452896 C T CCDC167 Silent p.R39R 0.61 TCGA-EE-A182-06 6 40400332 40400332 T C LRFN2 Missense_Mutation p.N174S 0.27 tolerated(0.78) benign(0.124) TCGA-EE-A182-06 6 43107157 43107157 C T PTK7 Silent p.F512F 0.29 TCGA-EE-A182-06 6 43403587 43403587 C T ABCC10 Silent p.D569D 0.35 TCGA-EE-A182-06 6 43413539 43413539 A G ABCC10 Missense_Mutation p.Y1078C 0.21 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A182-06 6 44141075 44141075 C T CAPN11 Silent p.L261L 0.37 TCGA-EE-A182-06 6 44392179 44392179 C T CDC5L Silent p.L476L 0.45 TCGA-EE-A182-06 6 46657203 46657203 C T TDRD6 Silent p.V446V 0.33 TCGA-EE-A182-06 6 46846012 46846012 C T GPR116 Silent p.L389L 0.22 TCGA-EE-A182-06 6 46846023 46846023 G A GPR116 Missense_Mutation p.P386S 0.23 tolerated(0.1) benign(0.045) TCGA-EE-A182-06 6 46874485 46874485 C T GPR116 Silent p.R5R 0.29 TCGA-EE-A182-06 6 47253756 47253756 G A TNFRSF21 Silent p.S224S 0.35 TCGA-EE-A182-06 6 47649895 47649895 T A GPR111 Missense_Mutation p.F534I 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 6 49604372 49604372 G A RHAG Missense_Mutation p.P52S 0.23 deleterious(0.04) benign(0.083) TCGA-EE-A182-06 6 49808679 49808679 G A CRISP1 Silent p.G155G 0.28 TCGA-EE-A182-06 6 54806553 54806553 A T FAM83B Silent p.S928S 0.28 TCGA-EE-A182-06 6 55039319 55039319 C T HCRTR2 5'UTR 0.19 TCGA-EE-A182-06 6 55360232 55360232 G A HMGCLL1 Silent p.I290I 0.35 TCGA-EE-A182-06 6 55360348 55360348 C T HMGCLL1 Missense_Mutation p.G252R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 6 55924020 55924020 C T COL21A1 Missense_Mutation p.E877K 0.22 tolerated(0.87) benign(0.012) TCGA-EE-A182-06 6 56374636 56374636 C T DST Silent p.L3649L 0.18 TCGA-EE-A182-06 6 56400020 56400020 G A DST Missense_Mutation p.S2991F 0.35 probably_damaging(1) TCGA-EE-A182-06 6 63989820 63989820 C T LGSN 3'UTR 0.39 TCGA-EE-A182-06 6 73751747 73751747 G A KCNQ5 Missense_Mutation p.G193E 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 6 7565712 7565712 G A DSP Missense_Mutation p.D300N 0.22 probably_damaging(0.996) TCGA-EE-A182-06 6 75796162 75796162 C T COL12A1 3'UTR 0.35 TCGA-EE-A182-06 6 75797356 75797356 G A COL12A1 Missense_Mutation p.P3040S 0.55 probably_damaging(0.998) TCGA-EE-A182-06 6 76124489 76124489 C T FILIP1 Missense_Mutation p.R67Q 0.53 tolerated(0.47) benign(0.005) TCGA-EE-A182-06 6 84269849 84269849 C T SNAP91 Missense_Mutation p.G869R 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A182-06 6 93974317 93974317 C T EPHA7 Silent p.G579G 0.45 TCGA-EE-A182-06 6 94067992 94067992 G A EPHA7 Missense_Mutation p.P324S 0.35 tolerated(0.11) benign(0.35) TCGA-EE-A182-06 6 99283557 99283557 C T POU3F2 Silent p.L270L 0.43 TCGA-EE-A182-06 7 100184178 100184178 G A FBXO24 5'Flank 0.18 TCGA-EE-A182-06 7 100283077 100283077 G A GIGYF1 Missense_Mutation p.P361L 0.20 deleterious(0.04) unknown(0) TCGA-EE-A182-06 7 100361455 100361455 C T ZAN Missense_Mutation p.S1338F 0.24 unknown(0) TCGA-EE-A182-06 7 100685898 100685898 C T MUC17 Missense_Mutation p.S3734F 0.31 benign(0.04) TCGA-EE-A182-06 7 103207118 103207118 G A RELN Silent p.I1559I 0.25 TCGA-EE-A182-06 7 108143005 108143005 G A PNPLA8 Silent p.L430L 0.27 TCGA-EE-A182-06 7 108143006 108143006 G A PNPLA8 Silent p.A429A 0.26 TCGA-EE-A182-06 7 11022442 11022442 C T PHF14 Nonsense_Mutation p.R186* 0.26 TCGA-EE-A182-06 7 112423807 112423807 C T TMEM168 Silent p.Q358Q 0.20 TCGA-EE-A182-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.29 tolerated(0.12) benign(0.063) TCGA-EE-A182-06 7 11418955 11418955 G A THSD7A Intron 0.18 TCGA-EE-A182-06 7 115580778 115580778 C T TFEC Missense_Mutation p.D291N 0.21 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A182-06 7 115596807 115596807 C T TFEC Missense_Mutation p.G103E 0.18 tolerated(0.07) benign(0.03) TCGA-EE-A182-06 7 11676051 11676051 G A THSD7A Missense_Mutation p.S243F 0.19 tolerated(0.51) possibly_damaging(0.633) TCGA-EE-A182-06 7 117431241 117431241 G A CTTNBP2 Missense_Mutation p.P670L 0.22 deleterious(0) possibly_damaging(0.611) TCGA-EE-A182-06 7 117876961 117876961 T C ANKRD7 Silent p.F231F 0.25 TCGA-EE-A182-06 7 120385919 120385919 C T KCND2 Missense_Mutation p.S518L 0.30 tolerated_low_confidence(0.31) possibly_damaging(0.562) TCGA-EE-A182-06 7 121944265 121944265 G A FEZF1 Missense_Mutation p.P76L 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 7 122338180 122338180 G A RNF133 Missense_Mutation p.P265S 0.23 deleterious(0.05) benign(0.419) TCGA-EE-A182-06 7 123593837 123593837 C T SPAM1 Silent p.S71S 0.21 TCGA-EE-A182-06 7 126173159 126173159 C T GRM8 Silent p.L759L 0.20 TCGA-EE-A182-06 7 126173578 126173578 C T GRM8 Missense_Mutation p.E620K 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 7 127894587 127894587 G A LEP Missense_Mutation p.R92K 0.23 tolerated(0.49) benign(0.137) TCGA-EE-A182-06 7 128588335 128588335 G A IRF5 Missense_Mutation p.E418K 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A182-06 7 130370065 130370065 T C TSGA13 5'UTR 0.26 TCGA-EE-A182-06 7 135047468 135047468 G A CNOT4 3'UTR 0.19 TCGA-EE-A182-06 7 138732568 138732568 G A ZC3HAV1 Silent p.S827S 0.14 TCGA-EE-A182-06 7 139706935 139706935 G A TBXAS1 Silent p.L440L 0.21 TCGA-EE-A182-06 7 141540847 141540847 C T PRSS37 Translation_Start_Site p.M1? 0.17 deleterious(0) benign(0.365) TCGA-EE-A182-06 7 141708362 141708362 C T MGAM Missense_Mutation p.P62S 0.24 tolerated(0.27) benign(0.001) TCGA-EE-A182-06 7 141750058 141750058 C A MGAM Missense_Mutation p.L871I 0.21 tolerated(1) benign(0.005) TCGA-EE-A182-06 7 141765538 141765538 C T MGAM Intron 0.47 TCGA-EE-A182-06 7 141765539 141765539 T A MGAM Intron 0.45 TCGA-EE-A182-06 7 141794601 141794601 C T MGAM Missense_Mutation p.R1570C 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 7 141803141 141803141 G A MGAM Missense_Mutation p.E1800K 0.29 tolerated(1) benign(0.015) TCGA-EE-A182-06 7 142008598 142008598 C T TRBV3-1 Missense_Mutation p.S24F 0.20 tolerated(0.12) benign(0.012) TCGA-EE-A182-06 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.24 TCGA-EE-A182-06 7 142045758 142045758 C T TRBV4-2 Missense_Mutation p.H96Y 0.18 tolerated(0.11) benign(0.411) TCGA-EE-A182-06 7 142119974 142119974 G A TRBV7-7 Silent p.L65L 0.21 TCGA-EE-A182-06 7 142223908 142223908 C T TRBV11-1 Missense_Mutation p.E87K 0.12 tolerated(0.22) benign(0.123) TCGA-EE-A182-06 7 142231673 142231673 C T TRBV10-1 Missense_Mutation p.G82S 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A182-06 7 142247384 142247384 G A TRBV7-3 Silent p.S24S 0.12 TCGA-EE-A182-06 7 142423626 142423626 C T TRBV27 Silent p.P94P 0.19 TCGA-EE-A182-06 7 142459673 142459673 G A PRSS1 Silent p.G83G 0.15 TCGA-EE-A182-06 7 142565436 142565436 C T EPHB6 Silent p.L607L 0.29 TCGA-EE-A182-06 7 142654920 142654920 G A KEL Silent p.V222V 0.21 TCGA-EE-A182-06 7 142655516 142655516 C T KEL Splice_Site p.X134_splice 0.14 TCGA-EE-A182-06 7 142723915 142723915 G A OR9A2 Missense_Mutation p.S102F 0.35 tolerated(0.48) benign(0.439) TCGA-EE-A182-06 7 142749510 142749510 C T OR6V1 Silent p.L25L 0.26 TCGA-EE-A182-06 7 142750181 142750181 C T OR6V1 Silent p.I248I 0.25 TCGA-EE-A182-06 7 143002175 143002175 C T CASP2 3'UTR 0.21 TCGA-EE-A182-06 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.23 TCGA-EE-A182-06 7 143633243 143633243 G A OR2F2 Silent p.E306E 0.30 TCGA-EE-A182-06 7 143748028 143748028 C T OR2A5 Silent p.F178F 0.21 TCGA-EE-A182-06 7 143771310 143771310 G A OR2A25 5'UTR 0.24 TCGA-EE-A182-06 7 144015342 144015342 G A OR2A1 Missense_Mutation p.G42E 0.18 deleterious(0) possibly_damaging(0.707) TCGA-EE-A182-06 7 144015551 144015551 C T OR2A1 Missense_Mutation p.L112F 0.17 tolerated(0.12) benign(0.018) TCGA-EE-A182-06 7 144062245 144062245 C T ARHGEF5 Missense_Mutation p.S828F 0.16 deleterious(0.01) benign(0.009) TCGA-EE-A182-06 7 148427274 148427274 C T CUL1 Silent p.I20I 0.21 TCGA-EE-A182-06 7 1484998 1484998 G A MICALL2 Silent p.F236F 0.46 TCGA-EE-A182-06 7 148876498 148876498 C T ZNF398 Missense_Mutation p.P512S 0.49 tolerated(0.48) possibly_damaging(0.811) TCGA-EE-A182-06 7 150093942 150093942 C T ZNF775 Missense_Mutation p.H125Y 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 7 150174302 150174302 C T GIMAP8 Nonsense_Mutation p.Q478* 0.22 TCGA-EE-A182-06 7 150217583 150217583 G A GIMAP7 Missense_Mutation p.S174N 0.16 tolerated(0.32) benign(0.006) TCGA-EE-A182-06 7 150325428 150325428 C T GIMAP6 Nonsense_Mutation p.W86* 0.18 TCGA-EE-A182-06 7 150416147 150416147 G A GIMAP1 Silent p.R4R 0.22 TCGA-EE-A182-06 7 150417327 150417327 G A GIMAP1 Missense_Mutation p.E79K 0.24 tolerated(0.17) benign(0.201) TCGA-EE-A182-06 7 150439501 150439501 G A GIMAP5 Missense_Mutation p.D92N 0.19 tolerated(0.12) possibly_damaging(0.5) TCGA-EE-A182-06 7 150771818 150771818 C T SLC4A2 Silent p.V979V 0.23 TCGA-EE-A182-06 7 151073817 151073817 G A NUB1 Missense_Mutation p.G554E 0.27 tolerated(0.07) probably_damaging(0.987) TCGA-EE-A182-06 7 154002608 154002608 C T DPP6 Intron 0.25 TCGA-EE-A182-06 7 154862598 154862598 C T HTR5A 5'UTR 0.28 TCGA-EE-A182-06 7 154876044 154876044 C T HTR5A Silent p.I307I 0.24 TCGA-EE-A182-06 7 155599042 155599042 G A SHH Silent p.F170F 0.17 TCGA-EE-A182-06 7 158896545 158896545 C T VIPR2 Missense_Mutation p.G87E 0.24 deleterious(0.02) probably_damaging(1) TCGA-EE-A182-06 7 18788706 18788706 G A HDAC9 Missense_Mutation p.R663Q 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A182-06 7 20785030 20785030 A T ABCB5 Missense_Mutation p.N1133I 0.32 deleterious(0) probably_damaging(0.97) TCGA-EE-A182-06 7 21698497 21698497 G A DNAH11 Missense_Mutation p.E1731K 0.21 possibly_damaging(0.758) TCGA-EE-A182-06 7 22202128 22202128 C T RAPGEF5 Missense_Mutation p.E286K 0.20 deleterious(0.01) benign(0.16) TCGA-EE-A182-06 7 23871875 23871875 G A STK31 Missense_Mutation p.E984K 0.22 tolerated_low_confidence(0.11) benign(0.352) TCGA-EE-A182-06 7 26240259 26240259 G T HNRNPA2B1 5'UTR 0.24 TCGA-EE-A182-06 7 27237677 27237677 C T HOXA13 3'UTR 0.20 TCGA-EE-A182-06 7 2979560 2979560 G A CARD11 Silent p.I229I 0.25 TCGA-EE-A182-06 7 30492118 30492118 C T NOD1 Nonsense_Mutation p.W305* 0.29 TCGA-EE-A182-06 7 31146151 31146151 G A ADCYAP1R1 Silent p.V448V 0.36 TCGA-EE-A182-06 7 34118718 34118718 C T BMPER Missense_Mutation p.S443L 0.26 tolerated(0.15) benign(0.013) TCGA-EE-A182-06 7 34818119 34818119 G A NPSR1 Missense_Mutation p.R109Q 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A182-06 7 36633946 36633946 C T AOAH Missense_Mutation p.G313R 0.28 tolerated(0.22) benign(0.232) TCGA-EE-A182-06 7 43484424 43484424 G A HECW1 Silent p.G551G 0.29 TCGA-EE-A182-06 7 43519254 43519254 C T HECW1 Missense_Mutation p.P1049S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 7 44046923 44046923 A G SPDYE1 Missense_Mutation p.H230R 0.33 tolerated(0.29) benign(0.18) TCGA-EE-A182-06 7 44283055 44283055 G A CAMK2B Silent p.I162I 0.25 TCGA-EE-A182-06 7 44561318 44561318 C T NPC1L1 Silent p.S982S 0.22 TCGA-EE-A182-06 7 44801181 44801181 C T ZMIZ2 Silent p.T458T 0.22 TCGA-EE-A182-06 7 45006396 45006396 C T MYO1G Silent p.K608K 0.27 TCGA-EE-A182-06 7 5104021 5104021 T - RBAK Frame_Shift_Del p.L312* 0.17 TCGA-EE-A182-06 7 53103886 53103886 C T POM121L12 Silent p.T174T 0.27 TCGA-EE-A182-06 7 54612452 54612452 G A VSTM2A Missense_Mutation p.D73N 0.27 tolerated(0.23) benign(0.049) TCGA-EE-A182-06 7 57188158 57188158 C T ZNF479 Missense_Mutation p.E322K 0.31 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A182-06 7 57188843 57188843 G A ZNF479 Silent p.F93F 0.25 TCGA-EE-A182-06 7 57529035 57529035 C T ZNF716 Missense_Mutation p.H290Y 0.18 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A182-06 7 63720662 63720662 C T ZNF679 Missense_Mutation p.H35Y 0.31 deleterious(0.04) benign(0.14) TCGA-EE-A182-06 7 63727078 63727078 A T ZNF679 Missense_Mutation p.E356V 0.21 deleterious(0) possibly_damaging(0.525) TCGA-EE-A182-06 7 70255637 70255637 G A AUTS2 Silent p.R1145R 0.45 TCGA-EE-A182-06 7 70800608 70800608 C A WBSCR17 Missense_Mutation p.S104Y 0.31 deleterious(0) possibly_damaging(0.462) TCGA-EE-A182-06 7 71488686 71488686 G A CALN1 Missense_Mutation p.R153C 0.24 deleterious(0) possibly_damaging(0.59) TCGA-EE-A182-06 7 73815895 73815895 G A CLIP2 Missense_Mutation p.E1043K 0.30 deleterious(0) possibly_damaging(0.81) TCGA-EE-A182-06 7 7516760 7516760 C T COL28A1 Missense_Mutation p.G406R 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A182-06 7 7571467 7571467 C T COL28A1 Missense_Mutation p.D65N 0.25 tolerated(0.1) probably_damaging(1) TCGA-EE-A182-06 7 77256824 77256824 G T PTPN12 Nonsense_Mutation p.E610* 0.22 TCGA-EE-A182-06 7 81600076 81600076 G A CACNA2D1 Intron 0.26 TCGA-EE-A182-06 7 82531969 82531969 G A PCLO Missense_Mutation p.S4509L 0.38 unknown(0) TCGA-EE-A182-06 7 82544827 82544827 G A PCLO Missense_Mutation p.P4159S 0.30 unknown(0) TCGA-EE-A182-06 7 82997226 82997226 G A SEMA3E Silent p.I668I 0.36 TCGA-EE-A182-06 7 83758442 83758442 G A SEMA3A Silent p.I110I 0.24 TCGA-EE-A182-06 7 87908728 87908728 C T STEAP4 Silent p.R455R 0.27 TCGA-EE-A182-06 7 88962805 88962805 G A ZNF804B Missense_Mutation p.G170E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 7 88963946 88963946 G A ZNF804B Silent p.R550R 0.30 TCGA-EE-A182-06 7 88964647 88964647 A G ZNF804B Missense_Mutation p.N784S 0.33 tolerated(0.16) benign(0.002) TCGA-EE-A182-06 7 91972374 91972374 C T ANKIB1 Missense_Mutation p.S275F 0.35 deleterious(0.03) benign(0.125) TCGA-EE-A182-06 7 95799394 95799394 G A SLC25A13 Missense_Mutation p.S426L 0.21 tolerated(0.16) benign(0.377) TCGA-EE-A182-06 7 99453257 99453257 C T CYP3A43 Silent p.I238I 0.26 TCGA-EE-A182-06 7 99569411 99569411 C T AZGP1 Missense_Mutation p.E99K 0.33 tolerated(0.91) benign(0.084) TCGA-EE-A182-06 8 104924356 104924356 G A RIMS2 Missense_Mutation p.D590N 0.15 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-EE-A182-06 8 106813439 106813439 G A ZFPM2 Missense_Mutation p.E377K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A182-06 8 106814063 106814063 C T ZFPM2 Missense_Mutation p.P585S 0.31 tolerated(0.87) benign(0.001) TCGA-EE-A182-06 8 106815038 106815038 G A ZFPM2 Missense_Mutation p.E910K 0.23 tolerated_low_confidence(0.12) benign(0.116) TCGA-EE-A182-06 8 108315580 108315580 C T ANGPT1 Missense_Mutation p.G275E 0.28 tolerated(1) benign(0.021) TCGA-EE-A182-06 8 110100160 110100160 C T TRHR Missense_Mutation p.S140F 0.27 deleterious(0) probably_damaging(0.981) TCGA-EE-A182-06 8 110131616 110131616 C T TRHR Silent p.L377L 0.24 TCGA-EE-A182-06 8 110424614 110424614 G A PKHD1L1 Missense_Mutation p.G736R 0.24 tolerated(0.06) possibly_damaging(0.858) TCGA-EE-A182-06 8 110471946 110471946 G A PKHD1L1 Missense_Mutation p.G2376E 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A182-06 8 110510897 110510897 G A PKHD1L1 Silent p.G3575G 0.35 TCGA-EE-A182-06 8 110520061 110520061 A G PKHD1L1 Missense_Mutation p.K3722E 0.34 deleterious(0.01) benign(0.013) TCGA-EE-A182-06 8 110587670 110587670 C T SYBU Missense_Mutation p.R486Q 0.16 tolerated(1) benign(0.002) TCGA-EE-A182-06 8 110980738 110980738 G A KCNV1 Missense_Mutation p.S361L 0.25 deleterious(0) benign(0.285) TCGA-EE-A182-06 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.30 tolerated(0.46) benign(0.348) TCGA-EE-A182-06 8 118159388 118159388 C T SLC30A8 Silent p.V89V 0.30 TCGA-EE-A182-06 8 118183386 118183386 C T SLC30A8 Missense_Mutation p.L315F 0.25 deleterious(0) probably_damaging(0.975) TCGA-EE-A182-06 8 118842550 118842550 G A EXT1 Silent p.I401I 0.25 TCGA-EE-A182-06 8 121381648 121381648 G A COL14A1 Silent p.G1745G 0.33 TCGA-EE-A182-06 8 121382631 121382631 C T COL14A1 Intron 0.33 TCGA-EE-A182-06 8 123964738 123964738 C T ZHX2 Missense_Mutation p.R330W 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 8 125083777 125083777 G A FER1L6 Missense_Mutation p.D1333N 0.30 deleterious(0.02) possibly_damaging(0.48) TCGA-EE-A182-06 8 125131160 125131160 G A FER1L6 Missense_Mutation p.E1789K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A182-06 8 126091068 126091068 G A KIAA0196 Missense_Mutation p.P208L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.29 deleterious(0) possibly_damaging(0.888) TCGA-EE-A182-06 8 131179807 131179807 G A ASAP1 Missense_Mutation p.S295F 0.27 deleterious(0) probably_damaging(0.962) TCGA-EE-A182-06 8 131955651 131955651 C T ADCY8 Silent p.Q433Q 0.29 TCGA-EE-A182-06 8 133141970 133141970 G A KCNQ3 Silent p.L720L 0.40 TCGA-EE-A182-06 8 133492557 133492557 C T KCNQ3 Missense_Mutation p.D75N 0.25 tolerated(0.12) benign(0.075) TCGA-EE-A182-06 8 134260982 134260982 G A NDRG1 Missense_Mutation p.P244L 0.36 tolerated(0.69) probably_damaging(0.941) TCGA-EE-A182-06 8 139145022 139145022 C T FAM135B Missense_Mutation p.M1345I 0.28 deleterious(0) probably_damaging(0.945) TCGA-EE-A182-06 8 139163460 139163460 C T FAM135B Silent p.E1086E 0.23 TCGA-EE-A182-06 8 144332679 144332679 C T ZFP41 3'UTR 0.35 TCGA-EE-A182-06 8 145584747 145584747 T G SLC52A2 3'UTR 0.33 TCGA-EE-A182-06 8 20072457 20072457 T C ATP6V1B2 Silent p.P352P 0.33 TCGA-EE-A182-06 8 2077143 2077143 C T MYOM2 Silent p.L1241L 0.24 TCGA-EE-A182-06 8 21767052 21767052 G A DOK2 Silent p.L337L 0.33 TCGA-EE-A182-06 8 22037291 22037291 C T BMP1 Missense_Mutation p.R304W 0.22 deleterious(0) probably_damaging(0.952) TCGA-EE-A182-06 8 22995379 22995379 T C TNFRSF10D 3'UTR 0.26 TCGA-EE-A182-06 8 24249837 24249837 C T ADAMDEC1 Missense_Mutation p.H51Y 0.26 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A182-06 8 24256963 24256963 C T ADAMDEC1 Silent p.S329S 0.25 TCGA-EE-A182-06 8 24261524 24261524 C T ADAMDEC1 Silent p.T443T 0.31 TCGA-EE-A182-06 8 24775118 24775118 G A NEFM Missense_Mutation p.E584K 0.25 tolerated(0.16) unknown(0) TCGA-EE-A182-06 8 26365726 26365726 C T PNMA2 Silent p.E182E 0.29 TCGA-EE-A182-06 8 27634208 27634208 G A ESCO2 Missense_Mutation p.G128E 0.38 tolerated(0.99) benign(0.01) TCGA-EE-A182-06 8 29923609 29923609 G A TMEM66 Missense_Mutation p.P297S 0.23 tolerated(0.3) benign(0.047) TCGA-EE-A182-06 8 3063043 3063043 G A CSMD1 Missense_Mutation p.T1656M 0.33 probably_damaging(0.947) TCGA-EE-A182-06 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.29 probably_damaging(0.912) TCGA-EE-A182-06 8 35425615 35425615 G A UNC5D Splice_Site p.X108_splice 0.28 TCGA-EE-A182-06 8 37601891 37601891 C T ERLIN2 Silent p.Y85Y 0.28 TCGA-EE-A182-06 8 37914672 37914672 G A EIF4EBP1 Silent p.R73R 0.33 TCGA-EE-A182-06 8 38282138 38282138 G A FGFR1 Silent p.F306F 0.31 TCGA-EE-A182-06 8 38314906 38314906 G A FGFR1 Missense_Mutation p.T53I 0.25 tolerated_low_confidence(0.29) benign(0.037) TCGA-EE-A182-06 8 40011284 40011284 C T C8orf4 Missense_Mutation p.T78M 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A182-06 8 41555635 41555635 C T ANK1 Missense_Mutation p.E896K 0.23 tolerated(0.12) benign(0.002) TCGA-EE-A182-06 8 41583332 41583332 G A ANK1 Missense_Mutation p.R220C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 8 42977983 42977983 G A POMK Missense_Mutation p.R339K 0.32 tolerated(0.2) benign(0.005) TCGA-EE-A182-06 8 48801780 48801780 G A PRKDC Silent p.L1358L 0.27 TCGA-EE-A182-06 8 48801781 48801781 G A PRKDC Silent p.L1357L 0.27 TCGA-EE-A182-06 8 55539605 55539605 G A RP1 Missense_Mutation p.E1055K 0.34 tolerated(0.1) benign(0.027) TCGA-EE-A182-06 8 55541696 55541696 C T RP1 Missense_Mutation p.H1752Y 0.33 deleterious(0) probably_damaging(0.918) TCGA-EE-A182-06 8 57228854 57228854 G A SDR16C5 Missense_Mutation p.S18L 0.17 tolerated(0.74) benign(0.002) TCGA-EE-A182-06 8 6673346 6673346 G A XKR5 RNA 0.35 TCGA-EE-A182-06 8 69002888 69002888 G A PREX2 Missense_Mutation p.E730K 0.31 tolerated(0.11) possibly_damaging(0.738) TCGA-EE-A182-06 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.25 tolerated(0.3) benign(0) TCGA-EE-A182-06 8 69434140 69434140 C T C8orf34 Missense_Mutation p.P291L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 8 70501204 70501204 C T SULF1 Intron 0.22 TCGA-EE-A182-06 8 72267066 72267066 G A EYA1 Silent p.L25L 0.31 TCGA-EE-A182-06 8 7308311 7308311 C T SPAG11B Nonsense_Mutation p.W109* 0.06 TCGA-EE-A182-06 8 73848342 73848342 G A KCNB2 Missense_Mutation p.R251Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 8 73849561 73849561 G A KCNB2 Silent p.E657E 0.26 TCGA-EE-A182-06 8 75227656 75227656 G A JPH1 Silent p.F193F 0.39 TCGA-EE-A182-06 8 77765725 77765725 G A ZFHX4 Missense_Mutation p.D2190N 0.24 probably_damaging(0.992) TCGA-EE-A182-06 8 77765833 77765833 A C ZFHX4 Missense_Mutation p.K2226Q 0.34 benign(0.254) TCGA-EE-A182-06 8 86044124 86044124 A G LRRCC1 Silent p.L632L 0.33 TCGA-EE-A182-06 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.29 deleterious(0.03) possibly_damaging(0.564) TCGA-EE-A182-06 8 92378825 92378825 G A SLC26A7 Silent p.V502V 0.29 TCGA-EE-A182-06 8 95177987 95177987 A G CDH17 Splice_Site p.X428_splice 0.34 TCGA-EE-A182-06 8 97172846 97172846 C T GDF6 Silent p.Q25Q 0.37 TCGA-EE-A182-06 9 101611465 101611465 C T GALNT12 3'UTR 0.32 TCGA-EE-A182-06 9 101798462 101798462 G A COL15A1 Missense_Mutation p.G767E 0.22 deleterious(0) possibly_damaging(0.692) TCGA-EE-A182-06 9 103002492 103002492 C T INVS Nonsense_Mutation p.R256* 0.28 TCGA-EE-A182-06 9 104125007 104125007 G A BAAT Silent p.F320F 0.33 TCGA-EE-A182-06 9 104448938 104448938 C T GRIN3A Missense_Mutation p.S415N 0.35 tolerated(0.32) benign(0.411) TCGA-EE-A182-06 9 104449092 104449092 C T GRIN3A Missense_Mutation p.E364K 0.29 tolerated(0.22) benign(0.004) TCGA-EE-A182-06 9 105767323 105767323 G A CYLC2 Missense_Mutation p.G137E 0.11 tolerated(1) benign(0) TCGA-EE-A182-06 9 111624689 111624689 G A ACTL7A Silent p.Q29Q 0.28 TCGA-EE-A182-06 9 111936874 111936874 C T EPB41L4B Missense_Mutation p.R888K 0.47 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-EE-A182-06 9 113170129 113170129 G A SVEP1 Missense_Mutation p.P2584L 0.20 probably_damaging(1) TCGA-EE-A182-06 9 113244641 113244642 - T SVEP1 Frame_Shift_Ins p.G724Rfs*5 0.30 TCGA-EE-A182-06 9 113459612 113459612 C T MUSK Missense_Mutation p.S165F 0.23 tolerated(0.07) benign(0.005) TCGA-EE-A182-06 9 113459613 113459613 C T MUSK Silent p.S165S 0.23 TCGA-EE-A182-06 9 113496637 113496637 G A MUSK Nonsense_Mutation p.W245* 0.35 TCGA-EE-A182-06 9 113538218 113538218 G A MUSK Silent p.T445T 0.26 TCGA-EE-A182-06 9 113550028 113550028 G A MUSK Missense_Mutation p.E613K 0.31 deleterious(0) probably_damaging(0.981) TCGA-EE-A182-06 9 114132741 114132741 T G KIAA0368 Missense_Mutation p.N1828H 0.29 deleterious(0.03) possibly_damaging(0.712) TCGA-EE-A182-06 9 115641978 115641978 C T SLC46A2 3'UTR 0.15 TCGA-EE-A182-06 9 115940943 115940943 C T FKBP15 Missense_Mutation p.G685S 0.33 tolerated(0.32) benign(0.026) TCGA-EE-A182-06 9 117063375 117063375 C T COL27A1 Silent p.P1575P 0.18 TCGA-EE-A182-06 9 117553070 117553070 G A TNFSF15 Silent p.L140L 0.33 TCGA-EE-A182-06 9 117845000 117845000 C T TNC Missense_Mutation p.E740K 0.36 deleterious(0) probably_damaging(0.973) TCGA-EE-A182-06 9 120475004 120475004 C T TLR4 Nonsense_Mutation p.Q200* 0.29 TCGA-EE-A182-06 9 123165272 123165272 G A CDK5RAP2 Missense_Mutation p.P1707S 0.38 tolerated(0.98) probably_damaging(0.968) TCGA-EE-A182-06 9 123911110 123911110 G A CNTRL Missense_Mutation p.S1207N 0.21 benign(0.005) TCGA-EE-A182-06 9 125281862 125281862 C T OR1J4 Missense_Mutation p.S148F 0.28 deleterious_low_confidence(0) benign(0.236) TCGA-EE-A182-06 9 125282145 125282145 C T OR1J4 Silent p.G242G 0.36 TCGA-EE-A182-06 9 125424093 125424093 C T OR1L1 Silent p.P33P 0.37 TCGA-EE-A182-06 9 126128261 126128261 C T CRB2 Silent p.L162L 0.33 TCGA-EE-A182-06 9 127454826 127454826 C T NR6A1 Intron 0.29 TCGA-EE-A182-06 9 127454827 127454827 C T NR6A1 Intron 0.29 TCGA-EE-A182-06 9 127994991 127994991 G A RABEPK Missense_Mutation p.G265R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 9 127994992 127994992 G A RABEPK Missense_Mutation p.G265E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 9 129453307 129453307 G A LMX1B Silent p.K173K 0.32 TCGA-EE-A182-06 9 130207399 130207399 G A ZNF79 Missense_Mutation p.E474K 0.28 tolerated(0.41) benign(0.008) TCGA-EE-A182-06 9 130479110 130479110 C T PTRH1 5'UTR 0.43 TCGA-EE-A182-06 9 130494359 130494359 G A TOR2A Missense_Mutation p.S307F 0.33 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A182-06 9 130656950 130656950 G A ST6GALNAC6 Silent p.F46F 0.30 TCGA-EE-A182-06 9 130700160 130700160 C T DPM2 5'UTR 0.27 TCGA-EE-A182-06 9 131346163 131346163 C T SPTAN1 Missense_Mutation p.S703L 0.20 deleterious(0) probably_damaging(0.927) TCGA-EE-A182-06 9 131777080 131777080 G A SH3GLB2 Silent p.N146N 0.28 TCGA-EE-A182-06 9 131777081 131777081 T A SH3GLB2 Missense_Mutation p.N146I 0.27 deleterious(0) probably_damaging(0.926) TCGA-EE-A182-06 9 131847310 131847310 C T DOLPP1 Silent p.F62F 0.32 TCGA-EE-A182-06 9 133760588 133760588 C T ABL1 Missense_Mutation p.P990S 0.29 tolerated_low_confidence(0.2) benign(0.307) TCGA-EE-A182-06 9 134501399 134501399 G A RAPGEF1 Missense_Mutation p.P539S 0.29 tolerated(0.51) benign(0.007) TCGA-EE-A182-06 9 137300902 137300902 C T RXRA Nonsense_Mutation p.Q183* 0.30 TCGA-EE-A182-06 9 137320993 137320993 C T RXRA Missense_Mutation p.S317F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 9 137622145 137622145 G A COL5A1 Missense_Mutation p.E330K 0.32 benign(0.029) TCGA-EE-A182-06 9 137676936 137676936 G A COL5A1 Silent p.G862G 0.23 TCGA-EE-A182-06 9 139259614 139259614 C T CARD9 Silent p.E471E 0.41 TCGA-EE-A182-06 9 139405216 139405216 G A NOTCH1 Missense_Mutation p.P877S 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 9 140109371 140109371 C T NDOR1 Silent p.L322L 0.27 TCGA-EE-A182-06 9 140109372 140109372 C T NDOR1 Missense_Mutation p.H323Y 0.29 deleterious(0) possibly_damaging(0.477) TCGA-EE-A182-06 9 140389596 140389596 C T PNPLA7 Silent p.V672V 0.38 TCGA-EE-A182-06 9 140395161 140395161 G A PNPLA7 Missense_Mutation p.S580F 0.27 deleterious(0) probably_damaging(0.952) TCGA-EE-A182-06 9 140729357 140729357 G A EHMT1 Silent p.E1283E 0.33 TCGA-EE-A182-06 9 15472667 15472667 G A PSIP1 Nonsense_Mutation p.R314* 0.40 TCGA-EE-A182-06 9 21029305 21029305 G A PTPLAD2 Missense_Mutation p.S44L 0.27 tolerated(0.36) benign(0.009) TCGA-EE-A182-06 9 35068289 35068289 C T VCP Missense_Mutation p.E30K 0.50 deleterious(0.05) possibly_damaging(0.504) TCGA-EE-A182-06 9 36169459 36169459 C T CCIN 5'UTR 0.67 TCGA-EE-A182-06 9 38396184 38396184 C T ALDH1B1 Missense_Mutation p.R147W 0.48 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A182-06 9 43822683 43822683 C T CNTNAP3B Nonsense_Mutation p.Q413* 0.33 TCGA-EE-A182-06 9 4841214 4841214 C T RCL1 Intron 0.25 TCGA-EE-A182-06 9 4844531 4844531 G A RCL1 Silent p.P239P 0.22 TCGA-EE-A182-06 9 4844532 4844532 G A RCL1 Missense_Mutation p.G240S 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A182-06 9 71007331 71007331 C T PGM5 Missense_Mutation p.R329C 0.37 tolerated(0.12) benign(0.005) TCGA-EE-A182-06 9 72912879 72912879 T A SMC5 Intron 0.33 TCGA-EE-A182-06 9 77339623 77339623 G A TRPM6 Missense_Mutation p.S1992F 0.26 deleterious_low_confidence(0.03) benign(0.022) TCGA-EE-A182-06 9 78789959 78789959 C T PCSK5 Missense_Mutation p.P605L 0.22 tolerated(0.24) probably_damaging(0.998) TCGA-EE-A182-06 9 79320216 79320216 G A PRUNE2 Missense_Mutation p.S2325F 0.32 tolerated(0.07) probably_damaging(0.99) TCGA-EE-A182-06 9 79438604 79438604 C T PRUNE2 Missense_Mutation p.E234K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 9 80919745 80919745 G A PSAT1 Missense_Mutation p.G96R 0.31 deleterious(0.03) benign(0.063) TCGA-EE-A182-06 9 8492925 8492925 C T PTPRD Missense_Mutation p.A802T 0.40 deleterious(0) probably_damaging(0.948) TCGA-EE-A182-06 9 90503550 90503550 C T SPATA31E1 Missense_Mutation p.P1383L 0.33 deleterious(0.02) probably_damaging(0.945) TCGA-EE-A182-06 9 93640054 93640054 G A SYK Silent p.Q461Q 0.26 TCGA-EE-A182-06 9 94800617 94800617 G A SPTLC1 Silent p.S389S 0.29 TCGA-EE-A182-06 9 97369204 97369204 C T FBP1 Missense_Mutation p.D200N 0.26 tolerated(0.9) benign(0.003) TCGA-EE-A182-06 9 98232142 98232142 T A PTCH1 Missense_Mutation p.L600F 0.32 deleterious(0.03) benign(0.345) TCGA-EE-A182-06 9 990125 990125 C T DMRT3 Missense_Mutation p.S180F 0.45 deleterious(0) probably_damaging(0.962) TCGA-EE-A182-06 9 99408285 99408285 G A AAED1 Missense_Mutation p.S148L 0.24 deleterious(0) possibly_damaging(0.874) TCGA-EE-A182-06 9 99581524 99581524 G A ZNF782 Missense_Mutation p.P261S 0.31 tolerated(0.65) benign(0) TCGA-EE-A182-06 X 100088234 100088234 T C CSTF2 Silent p.L425L 0.36 TCGA-EE-A182-06 X 101818027 101818027 G A NXF4 Intron 0.39 TCGA-EE-A182-06 X 102334948 102334948 G A NXF3 Silent p.L349L 0.28 TCGA-EE-A182-06 X 102338549 102338549 G A NXF3 Silent p.F141F 0.30 TCGA-EE-A182-06 X 106066667 106066667 C T TBC1D8B Silent p.V266V 0.29 TCGA-EE-A182-06 X 107310287 107310287 G A VSIG1 Missense_Mutation p.G148E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 107464577 107464577 C T COL4A6 Missense_Mutation p.G59S 0.22 unknown(0) TCGA-EE-A182-06 X 108647677 108647677 C A GUCY2F Missense_Mutation p.G669W 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 108696842 108696842 C T GUCY2F Missense_Mutation p.E427K 0.34 tolerated(0.75) benign(0.129) TCGA-EE-A182-06 X 108926538 108926538 G A ACSL4 Missense_Mutation p.R60C 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A182-06 X 110644401 110644401 C T DCX Silent p.K255K 0.22 TCGA-EE-A182-06 X 11139964 11139964 T A HCCS 3'UTR 0.42 TCGA-EE-A182-06 X 11174743 11174743 G A ARHGAP6 Missense_Mutation p.P605S 0.21 tolerated(0.59) benign(0.006) TCGA-EE-A182-06 X 117079528 117079528 C T KLHL13 Missense_Mutation p.E40K 0.17 deleterious_low_confidence(0) benign(0.204) TCGA-EE-A182-06 X 11790756 11790756 C T MSL3 Silent p.I466I 0.20 TCGA-EE-A182-06 X 118223410 118223410 C T KIAA1210 Missense_Mutation p.E595K 0.26 tolerated(0.21) possibly_damaging(0.522) TCGA-EE-A182-06 X 118676491 118676491 C T CXorf56 Missense_Mutation p.E164K 0.23 deleterious(0.02) benign(0.086) TCGA-EE-A182-06 X 119246802 119246802 C T RHOXF1 Missense_Mutation p.G141S 0.26 tolerated(0.1) probably_damaging(0.982) TCGA-EE-A182-06 X 119419545 119419545 T C TMEM255A Missense_Mutation p.S144G 0.33 tolerated(0.27) benign(0.01) TCGA-EE-A182-06 X 119500515 119500515 G A ATP1B4 Missense_Mutation p.E67K 0.27 tolerated(0.45) benign(0.019) TCGA-EE-A182-06 X 120009248 120009248 C T CT47B1 Missense_Mutation p.E93K 0.29 deleterious(0.02) possibly_damaging(0.542) TCGA-EE-A182-06 X 120181778 120181778 C T GLUD2 Silent p.I80I 0.33 TCGA-EE-A182-06 X 120182569 120182569 A G GLUD2 Missense_Mutation p.D344G 0.34 deleterious(0.02) possibly_damaging(0.854) TCGA-EE-A182-06 X 122459949 122459949 G A GRIA3 Missense_Mutation p.G194E 0.28 tolerated(1) benign(0.008) TCGA-EE-A182-06 X 123587292 123587292 C T TENM1 Missense_Mutation p.M1333I 0.35 tolerated(0.09) benign(0.032) TCGA-EE-A182-06 X 125298602 125298602 A G DCAF12L2 Missense_Mutation p.Y436H 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 X 125299922 125299922 G A DCAF12L2 Intron 0.30 TCGA-EE-A182-06 X 12708397 12708397 G A FRMPD4 Silent p.G255G 0.30 TCGA-EE-A182-06 X 12734739 12734739 G A FRMPD4 Missense_Mutation p.D721N 0.33 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-EE-A182-06 X 12734932 12734932 C T FRMPD4 Missense_Mutation p.S785F 0.28 deleterious(0) probably_damaging(0.921) TCGA-EE-A182-06 X 128614696 128614696 C T SMARCA1 Silent p.R808R 0.44 TCGA-EE-A182-06 X 129203628 129203628 C T ELF4 Silent p.L278L 0.21 TCGA-EE-A182-06 X 129804108 129804108 G A ENOX2 Silent p.F204F 0.40 TCGA-EE-A182-06 X 130407854 130407867 GTTACACTCTTCAA - IGSF1 Frame_Shift_Del p.L1310Pfs*68 0.18 TCGA-EE-A182-06 X 131216439 131216439 G A FRMD7 Missense_Mutation p.S286L 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A182-06 X 135080653 135080653 C T SLC9A6 Nonsense_Mutation p.R206* 0.31 TCGA-EE-A182-06 X 135390975 135390975 G A GPR112 Silent p.L13L 0.27 TCGA-EE-A182-06 X 135427097 135427097 C T GPR112 Missense_Mutation p.S411F 0.32 tolerated(0.05) benign(0.197) TCGA-EE-A182-06 X 135428072 135428072 T A GPR112 Missense_Mutation p.F736Y 0.29 deleterious(0.04) benign(0.342) TCGA-EE-A182-06 X 135429448 135429448 G A GPR112 Missense_Mutation p.G1195R 0.29 deleterious(0.04) possibly_damaging(0.568) TCGA-EE-A182-06 X 13621442 13621442 G A EGFL6 Missense_Mutation p.R136K 0.23 tolerated(0.09) possibly_damaging(0.782) TCGA-EE-A182-06 X 13624618 13624618 G A EGFL6 Missense_Mutation p.R214Q 0.29 tolerated(0.08) benign(0.047) TCGA-EE-A182-06 X 139586695 139586695 C T SOX3 Nonsense_Mutation p.W177* 0.31 TCGA-EE-A182-06 X 140335748 140335748 C T SPANXC Missense_Mutation p.E66K 0.26 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A182-06 X 1407431 1407431 C T CSF2RA Missense_Mutation p.S80L 0.28 tolerated(0.66) benign(0.229) TCGA-EE-A182-06 X 140953268 140953268 G A MAGEC3 Silent p.K45K 0.28 TCGA-EE-A182-06 X 140993458 140993458 G A MAGEC1 Missense_Mutation p.D90N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-EE-A182-06 X 140996502 140996502 G A MAGEC1 Silent p.K1104K 0.30 TCGA-EE-A182-06 X 140996503 140996503 G A MAGEC1 Missense_Mutation p.D1105N 0.30 deleterious(0) unknown(0) TCGA-EE-A182-06 X 141291305 141291305 C T MAGEC2 Missense_Mutation p.E157K 0.28 tolerated(0.63) benign(0.004) TCGA-EE-A182-06 X 142795103 142795103 G A SPANXN2 3'UTR 0.30 TCGA-EE-A182-06 X 14708900 14708900 G A GLRA2 Silent p.L333L 0.33 TCGA-EE-A182-06 X 148797441 148797441 C T MAGEA11 Missense_Mutation p.P99S 0.28 deleterious(0.01) benign(0.095) TCGA-EE-A182-06 X 149013428 149013428 C T MAGEA8 Nonsense_Mutation p.Q128* 0.26 TCGA-EE-A182-06 X 149839967 149839967 C T MTM1 Missense_Mutation p.L571F 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A182-06 X 149919578 149919578 C T MTMR1 Intron 0.23 TCGA-EE-A182-06 X 150780153 150780153 G A PASD1 Missense_Mutation p.M45I 0.26 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A182-06 X 150832597 150832597 C T PASD1 Missense_Mutation p.S283F 0.23 tolerated(0.06) benign(0.074) TCGA-EE-A182-06 X 150840954 150840954 G A PASD1 Silent p.G579G 0.26 TCGA-EE-A182-06 X 151138774 151138774 C T GABRE Missense_Mutation p.E53K 0.30 tolerated(0.31) benign(0) TCGA-EE-A182-06 X 151283840 151283840 G A RP11-1007I13.4 RNA 0.25 TCGA-EE-A182-06 X 151303792 151303792 G A MAGEA10 Missense_Mutation p.P101S 0.25 tolerated(0.23) benign(0.223) TCGA-EE-A182-06 X 151869895 151869895 C T MAGEA6 Silent p.I195I 0.27 TCGA-EE-A182-06 X 151870016 151870016 G C MAGEA6 Missense_Mutation p.D236H 0.29 tolerated(1) benign(0.001) TCGA-EE-A182-06 X 151935152 151935152 G A MAGEA3 3'UTR 0.17 TCGA-EE-A182-06 X 152815137 152815137 G A ATP2B3 Silent p.K507K 0.25 TCGA-EE-A182-06 X 152914786 152914786 C T DUSP9 Missense_Mutation p.P158L 0.22 deleterious(0) probably_damaging(0.947) TCGA-EE-A182-06 X 152937543 152937543 C T PNCK Intron 0.36 TCGA-EE-A182-06 X 152981133 152981133 C T BCAP31 Missense_Mutation p.E136K 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A182-06 X 153062943 153062943 A T SSR4 Nonsense_Mutation p.K73* 0.20 TCGA-EE-A182-06 X 153577218 153577218 C A FLNA Nonstop_Mutation p.*2648Lext*? 0.41 TCGA-EE-A182-06 X 155235098 155235098 G A IL9R Nonsense_Mutation p.W245* 0.30 TCGA-EE-A182-06 X 15582305 15582305 C T ACE2 Silent p.L717L 0.35 TCGA-EE-A182-06 X 18259384 18259384 C T SCML2 Missense_Mutation p.G697E 0.23 deleterious(0) benign(0.366) TCGA-EE-A182-06 X 21392999 21392999 G A CNKSR2 5'UTR 0.31 TCGA-EE-A182-06 X 21863441 21863441 C T MBTPS2 Missense_Mutation p.S126F 0.30 tolerated_low_confidence(0.34) benign(0.099) TCGA-EE-A182-06 X 21871589 21871589 C T MBTPS2 Missense_Mutation p.S213L 0.31 deleterious(0) probably_damaging(0.946) TCGA-EE-A182-06 X 23411622 23411622 G A PTCHD1 Missense_Mutation p.D663N 0.28 tolerated(0.37) benign(0.038) TCGA-EE-A182-06 X 23722031 23722031 C T ACOT9 Missense_Mutation p.D443N 0.29 tolerated_low_confidence(0.23) benign(0.011) TCGA-EE-A182-06 X 24580160 24580160 T C PCYT1B 3'UTR 0.33 TCGA-EE-A182-06 X 26157999 26157999 C T MAGEB18 Silent p.F299F 0.16 TCGA-EE-A182-06 X 27839460 27839460 G A MAGEB10 Missense_Mutation p.E13K 0.28 tolerated(0.05) possibly_damaging(0.529) TCGA-EE-A182-06 X 27998321 27998321 C T DCAF8L1 Silent p.K377K 0.25 TCGA-EE-A182-06 X 30269469 30269469 G A MAGEB1 Missense_Mutation p.E287K 0.23 tolerated(0.06) possibly_damaging(0.691) TCGA-EE-A182-06 X 31697516 31697516 G A DMD Silent p.I2616I 0.20 TCGA-EE-A182-06 X 3228225 3228225 G A MXRA5 Silent p.L2673L 0.30 TCGA-EE-A182-06 X 3242075 3242075 C T MXRA5 Missense_Mutation p.G551S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 34148678 34148678 G A FAM47A Missense_Mutation p.P573L 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A182-06 X 35820547 35820547 C A MAGEB16 Silent p.T78T 0.20 TCGA-EE-A182-06 X 35993308 35993308 A T CXorf22 Missense_Mutation p.N767Y 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A182-06 X 35993312 35993312 C A CXorf22 Missense_Mutation p.T768N 0.27 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A182-06 X 36163001 36163001 G A CHDC2 3'UTR 0.21 TCGA-EE-A182-06 X 37028054 37028054 C A FAM47C Missense_Mutation p.P524Q 0.27 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-EE-A182-06 X 37029438 37029438 C T FAM47C Silent p.F985F 0.30 TCGA-EE-A182-06 X 38020264 38020264 C T SRPX Missense_Mutation p.G233R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 39930940 39930940 C T BCOR Missense_Mutation p.E1001K 0.28 deleterious(0) probably_damaging(0.991) TCGA-EE-A182-06 X 39932229 39932229 G A BCOR Silent p.N790N 0.28 TCGA-EE-A182-06 X 39933510 39933510 C T BCOR Silent p.R363R 0.29 TCGA-EE-A182-06 X 41555682 41555682 C T GPR34 Missense_Mutation p.R266C 0.26 deleterious(0) probably_damaging(0.985) TCGA-EE-A182-06 X 45011047 45011047 G A CXorf36 Silent p.S384S 0.33 TCGA-EE-A182-06 X 46915589 46915589 G A JADE3 Missense_Mutation p.E517K 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A182-06 X 47842375 47842375 C T ZNF182 Missense_Mutation p.G88E 0.26 tolerated(0.76) benign(0) TCGA-EE-A182-06 X 48546827 48546827 G A WAS Missense_Mutation p.E306K 0.31 deleterious(0) probably_damaging(0.974) TCGA-EE-A182-06 X 48819939 48819939 G A KCND1 Missense_Mutation p.S616F 0.29 deleterious_low_confidence(0) possibly_damaging(0.603) TCGA-EE-A182-06 X 49072916 49072916 A C CACNA1F Missense_Mutation p.S1065R 0.31 deleterious(0.02) benign(0.02) TCGA-EE-A182-06 X 49855482 49855482 G A CLCN5 Missense_Mutation p.E767K 0.27 deleterious(0.01) benign(0.265) TCGA-EE-A182-06 X 49957175 49957175 G A AKAP4 Missense_Mutation p.S730L 0.33 tolerated(0.55) benign(0.002) TCGA-EE-A182-06 X 50094243 50094243 C T CCNB3 Missense_Mutation p.P1322S 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A182-06 X 50339667 50339667 G A SHROOM4 3'UTR 0.34 TCGA-EE-A182-06 X 50345782 50345782 C T SHROOM4 Missense_Mutation p.G1265R 0.40 tolerated(0.31) possibly_damaging(0.824) TCGA-EE-A182-06 X 50351018 50351018 C A SHROOM4 Nonsense_Mutation p.E1042* 0.24 TCGA-EE-A182-06 X 50438892 50438892 C T SHROOM4 Missense_Mutation p.G55S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 50659177 50659177 C A BMP15 Missense_Mutation p.P250H 0.34 deleterious(0.01) benign(0.062) TCGA-EE-A182-06 X 51488235 51488235 C T GSPT2 Missense_Mutation p.P505S 0.17 tolerated(0.17) benign(0.12) TCGA-EE-A182-06 X 53564554 53564554 G A HUWE1 Silent p.L4034L 0.13 TCGA-EE-A182-06 X 54209044 54209044 C T FAM120C Silent p.L196L 0.29 TCGA-EE-A182-06 X 5811469 5811469 G A NLGN4X Missense_Mutation p.P614S 0.27 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A182-06 X 595510 595510 C T SHOX Silent p.F145F 0.32 TCGA-EE-A182-06 X 63412488 63412488 C T AMER1 Missense_Mutation p.E227K 0.32 tolerated(0.14) benign(0.016) TCGA-EE-A182-06 X 64738224 64738224 G A LAS1L Missense_Mutation p.P524S 0.35 tolerated(0.5) benign(0.011) TCGA-EE-A182-06 X 64959738 64959738 G A MSN Missense_Mutation p.E573K 0.31 tolerated(0.12) probably_damaging(0.941) TCGA-EE-A182-06 X 65478819 65478819 C T HEPH Missense_Mutation p.R1066W 0.27 deleterious(0) possibly_damaging(0.893) TCGA-EE-A182-06 X 65486281 65486281 G A HEPH Splice_Site p.X1136_splice 0.36 TCGA-EE-A182-06 X 69354582 69354582 C T IGBP1 Missense_Mutation p.S133F 0.35 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A182-06 X 69420265 69420265 G A DGAT2L6 Missense_Mutation p.R143K 0.20 deleterious(0.05) benign(0.021) TCGA-EE-A182-06 X 70787443 70787443 C T OGT Silent p.L895L 0.25 TCGA-EE-A182-06 X 72433613 72433613 C T NAP1L2 Missense_Mutation p.G239E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A182-06 X 73048905 73048905 C T XIST Intron 0.16 TCGA-EE-A182-06 X 73960458 73960458 C T KIAA2022 Missense_Mutation p.E1312K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A182-06 X 73960926 73960926 G A KIAA2022 Silent p.L1156L 0.26 TCGA-EE-A182-06 X 73961993 73961993 G A KIAA2022 Missense_Mutation p.S800F 0.24 deleterious(0) possibly_damaging(0.902) TCGA-EE-A182-06 X 74520769 74520769 C T UPRT Silent p.I264I 0.32 TCGA-EE-A182-06 X 75648791 75648791 C T MAGEE1 Silent p.A156A 0.28 TCGA-EE-A182-06 X 76711906 76711906 G A FGF16 Missense_Mutation p.E82K 0.32 benign(0.001) TCGA-EE-A182-06 X 77912666 77912666 C T ZCCHC5 Missense_Mutation p.E418K 0.31 tolerated(0.07) benign(0.044) TCGA-EE-A182-06 X 77913741 77913741 C T ZCCHC5 Silent p.K59K 0.33 TCGA-EE-A182-06 X 7894014 7894014 A G PNPLA4 Silent p.A49A 0.23 TCGA-EE-A182-06 X 79942376 79942376 G A BRWD3 Missense_Mutation p.L1331F 0.24 tolerated(0.12) possibly_damaging(0.714) TCGA-EE-A182-06 X 79943581 79943581 G A BRWD3 Missense_Mutation p.S1284L 0.38 deleterious(0) probably_damaging(0.937) TCGA-EE-A182-06 X 79964984 79964984 A T BRWD3 Missense_Mutation p.N806K 0.31 tolerated(0.86) benign(0.004) TCGA-EE-A182-06 X 83372093 83372093 G A RPS6KA6 Silent p.F308F 0.22 TCGA-EE-A182-06 X 83591836 83591836 G A HDX Silent p.D571D 0.28 TCGA-EE-A182-06 X 8434244 8434244 G A VCX3B Silent p.E187E 0.32 TCGA-EE-A182-06 X 85158695 85158695 G A CHM Intron 0.33 TCGA-EE-A182-06 X 86921599 86921599 G A KLHL4 Intron 0.32 TCGA-EE-A182-06 X 92965002 92965002 C T FAM133A Missense_Mutation p.S195L 0.20 tolerated_low_confidence(1) unknown(0) TCGA-EE-A182-06 X 96192235 96192235 C T DIAPH2 Silent p.L365L 0.17 TCGA-EE-A183-06 10 100020801 100020801 C T LOXL4 Silent p.E180E 0.18 TCGA-EE-A183-06 10 105048203 105048203 T G INA Missense_Mutation p.L426R 0.17 tolerated(0.61) benign(0.07) TCGA-EE-A183-06 10 105162956 105162956 C T PDCD11 Missense_Mutation p.L106F 0.12 deleterious(0) probably_damaging(0.994) TCGA-EE-A183-06 10 105215178 105215178 C T CALHM1 Silent p.T294T 0.11 TCGA-EE-A183-06 10 115978251 115978251 G A TDRD1 Missense_Mutation p.G801E 0.08 deleterious(0) probably_damaging(0.988) TCGA-EE-A183-06 10 12159748 12159748 C T DHTKD1 Missense_Mutation p.P799L 0.12 deleterious(0.03) possibly_damaging(0.477) TCGA-EE-A183-06 10 122624714 122624714 C T WDR11 Missense_Mutation p.P290L 0.11 deleterious(0) probably_damaging(0.938) TCGA-EE-A183-06 10 124336133 124336133 G A DMBT1 Missense_Mutation p.D168N 0.14 tolerated(0.51) benign(0.405) TCGA-EE-A183-06 10 124399773 124399773 C T DMBT1 Missense_Mutation p.S2258F 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A183-06 10 12870825 12870825 T C CAMK1D Missense_Mutation p.V366A 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-EE-A183-06 10 13481408 13481408 C T BEND7 Missense_Mutation p.E391K 0.17 deleterious_low_confidence(0.01) benign(0.025) TCGA-EE-A183-06 10 15115166 15115166 G A OLAH Missense_Mutation p.E299K 0.19 deleterious(0.04) benign(0.14) TCGA-EE-A183-06 10 15256417 15256417 C T FAM171A1 Silent p.T390T 0.17 TCGA-EE-A183-06 10 25314260 25314260 C T THNSL1 Missense_Mutation p.P703L 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A183-06 10 28260161 28260161 G A ARMC4 Missense_Mutation p.R340C 0.26 deleterious(0.03) benign(0.002) TCGA-EE-A183-06 10 29600074 29600074 C T LYZL1 3'UTR 0.23 TCGA-EE-A183-06 10 32150514 32150514 G A ARHGAP12 Nonsense_Mutation p.Q253* 0.18 TCGA-EE-A183-06 10 33475384 33475384 C T NRP1 Missense_Mutation p.E699K 0.13 tolerated(0.85) possibly_damaging(0.557) TCGA-EE-A183-06 10 43619124 43619124 C T RET Missense_Mutation p.S936F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 10 44052086 44052086 G A ZNF239 3'UTR 0.17 TCGA-EE-A183-06 10 44052942 44052942 G A ZNF239 Missense_Mutation p.P196S 0.26 tolerated(0.41) possibly_damaging(0.8) TCGA-EE-A183-06 10 44053196 44053196 C T ZNF239 Missense_Mutation p.S111N 0.24 tolerated(0.4) benign(0.004) TCGA-EE-A183-06 10 52103419 52103419 C T SGMS1 Missense_Mutation p.M152I 0.18 tolerated(0.33) benign(0.007) TCGA-EE-A183-06 10 5238875 5238875 C T AKR1C4 Silent p.F15F 0.15 TCGA-EE-A183-06 10 52619618 52619618 C T A1CF 5'UTR 0.17 TCGA-EE-A183-06 10 55583112 55583112 G A PCDH15 Silent p.F1460F 0.16 TCGA-EE-A183-06 10 55587287 55587287 C A PCDH15 Missense_Mutation p.K1411N 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 10 61062601 61062601 G A FAM13C Missense_Mutation p.S156L 0.09 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A183-06 10 61413579 61413579 G A SLC16A9 Missense_Mutation p.S402F 0.16 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A183-06 10 61834170 61834170 G A ANK3 Missense_Mutation p.P2157S 0.19 probably_damaging(0.992) TCGA-EE-A183-06 10 61835456 61835456 G A ANK3 Missense_Mutation p.S1728F 0.11 benign(0.276) TCGA-EE-A183-06 10 68857444 68857444 G A LRRTM3 Missense_Mutation p.E546K 0.17 deleterious_low_confidence(0) possibly_damaging(0.725) TCGA-EE-A183-06 10 70916813 70916813 G A VPS26A Missense_Mutation p.E94K 0.13 deleterious(0) probably_damaging(0.925) TCGA-EE-A183-06 10 71332748 71332748 C T NEUROG3 Missense_Mutation p.E18K 0.19 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A183-06 10 73562739 73562739 C T CDH23 Missense_Mutation p.P283S 0.15 tolerated(0.21) possibly_damaging(0.588) TCGA-EE-A183-06 10 73887915 73887915 C T ASCC1 Silent p.R322R 0.14 TCGA-EE-A183-06 10 82036311 82036311 G A MAT1A Missense_Mutation p.P197S 0.16 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A183-06 10 87614358 87614358 G A GRID1 Silent p.G376G 0.14 TCGA-EE-A183-06 10 95557585 95557585 C T LGI1 3'UTR 0.33 TCGA-EE-A183-06 10 96066191 96066191 C T PLCE1 Missense_Mutation p.S1877F 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 10 96447635 96447635 G A CYP2C18 Missense_Mutation p.E93K 0.12 deleterious(0.03) benign(0.051) TCGA-EE-A183-06 10 96698494 96698494 C T CYP2C9 Missense_Mutation p.L19F 0.12 tolerated(0.15) unknown(0) TCGA-EE-A183-06 10 98154991 98154991 G A TLL2 Missense_Mutation p.S560F 0.21 deleterious(0) probably_damaging(0.93) TCGA-EE-A183-06 11 102195745 102195745 G A BIRC3 Missense_Mutation p.E169K 0.12 deleterious(0) possibly_damaging(0.852) TCGA-EE-A183-06 11 102662100 102662100 C T MMP1 Missense_Mutation p.G387E 0.16 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A183-06 11 113286168 113286168 C T DRD2 Missense_Mutation p.R233K 0.11 tolerated(0.77) benign(0.026) TCGA-EE-A183-06 11 113672311 113672311 G A USP28 Silent p.I984I 0.24 TCGA-EE-A183-06 11 117403218 117403218 G T DSCAML1 Silent p.T237T 0.10 TCGA-EE-A183-06 11 118085557 118085557 G A AMICA1 Silent p.L9L 0.15 TCGA-EE-A183-06 11 118769574 118769574 G A BCL9L Silent p.P1350P 0.17 TCGA-EE-A183-06 11 120980003 120980003 C T TECTA Silent p.A94A 0.15 TCGA-EE-A183-06 11 120996548 120996548 C T TECTA Missense_Mutation p.P581S 0.18 tolerated(0.55) benign(0.006) TCGA-EE-A183-06 11 121348849 121348849 G A SORL1 Missense_Mutation p.G142E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 11 121492969 121492969 G A SORL1 Missense_Mutation p.E2055K 0.22 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A183-06 11 122944158 122944158 C G CLMP 3'UTR 0.17 TCGA-EE-A183-06 11 124310158 124310158 G A OR8B8 Missense_Mutation p.S275F 0.21 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-EE-A183-06 11 129795050 129795050 G A PRDM10 Silent p.F539F 0.20 TCGA-EE-A183-06 11 1459553 1459553 G A BRSK2 Silent p.A114A 0.17 TCGA-EE-A183-06 11 16776586 16776586 C T C11orf58 Missense_Mutation p.P163S 0.15 tolerated(0.09) benign(0.207) TCGA-EE-A183-06 11 16776587 16776587 C T C11orf58 Missense_Mutation p.P163L 0.14 tolerated(0.07) possibly_damaging(0.892) TCGA-EE-A183-06 11 18956283 18956283 C T MRGPRX1 Missense_Mutation p.G17R 0.09 tolerated(0.15) benign(0.017) TCGA-EE-A183-06 11 20673884 20673884 C T SLC6A5 Missense_Mutation p.S707F 0.17 deleterious(0.01) benign(0.337) TCGA-EE-A183-06 11 20673885 20673885 T A SLC6A5 Silent p.S707S 0.17 TCGA-EE-A183-06 11 22296268 22296268 G A ANO5 Missense_Mutation p.E797K 0.12 tolerated(0.4) benign(0.328) TCGA-EE-A183-06 11 22363231 22363231 T A SLC17A6 Missense_Mutation p.C82S 0.23 tolerated(0.05) benign(0.155) TCGA-EE-A183-06 11 26694959 26694959 C T SLC5A12 Missense_Mutation p.G566E 0.13 tolerated(1) benign(0.001) TCGA-EE-A183-06 11 31312296 31312296 C T DCDC1 Missense_Mutation p.M286I 0.22 tolerated(0.05) probably_damaging(0.925) TCGA-EE-A183-06 11 34129802 34129802 C T NAT10 Silent p.I10I 0.11 TCGA-EE-A183-06 11 44286723 44286723 G A ALX4 Missense_Mutation p.P306L 0.25 deleterious(0) possibly_damaging(0.884) TCGA-EE-A183-06 11 45891949 45891949 C T CRY2 Missense_Mutation p.S493L 0.12 deleterious(0.02) benign(0.063) TCGA-EE-A183-06 11 46406977 46406977 G A CHRM4 Silent p.F377F 0.13 TCGA-EE-A183-06 11 4674660 4674660 C T OR51E1 Nonsense_Mutation p.R302* 0.19 TCGA-EE-A183-06 11 46800125 46800125 G A CKAP5 Missense_Mutation p.P820S 0.24 deleterious(0.03) benign(0.164) TCGA-EE-A183-06 11 4703459 4703459 C T OR51E2 Silent p.L161L 0.19 TCGA-EE-A183-06 11 47698906 47698906 G A AGBL2 Silent p.I688I 0.12 TCGA-EE-A183-06 11 4790235 4790235 T A OR51F1 Missense_Mutation p.M305L 0.19 tolerated(0.27) benign(0) TCGA-EE-A183-06 11 48510633 48510633 G A OR4A47 Missense_Mutation p.A97T 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A183-06 11 4869588 4869588 G A OR51S1 Missense_Mutation p.S284F 0.15 deleterious(0) probably_damaging(0.99) TCGA-EE-A183-06 11 4967848 4967848 G A OR51A4 Silent p.F161F 0.13 TCGA-EE-A183-06 11 5021070 5021070 C T OR51L1 Silent p.P286P 0.10 TCGA-EE-A183-06 11 55032413 55032413 G A TRIM48 Missense_Mutation p.E28K 0.14 deleterious(0) probably_damaging(0.953) TCGA-EE-A183-06 11 55541205 55541205 G A OR5D13 Missense_Mutation p.G98S 0.16 tolerated(0.13) benign(0.023) TCGA-EE-A183-06 11 55606461 55606461 C T OR5D16 Silent p.I78I 0.09 TCGA-EE-A183-06 11 55944456 55944456 C T OR5J2 Silent p.D121D 0.18 TCGA-EE-A183-06 11 56128424 56128424 G A OR8J1 Silent p.R234R 0.19 TCGA-EE-A183-06 11 56380970 56380970 G A OR5M1 Silent p.S3S 0.15 TCGA-EE-A183-06 11 57379302 57379302 C T SERPING1 Missense_Mutation p.A381V 0.27 deleterious(0) probably_damaging(0.967) TCGA-EE-A183-06 11 57958248 57958248 C T OR9Q2 Missense_Mutation p.R96C 0.15 tolerated(0.17) benign(0.035) TCGA-EE-A183-06 11 58207292 58207292 G A OR5B12 Silent p.F111F 0.10 TCGA-EE-A183-06 11 58207622 58207622 C T OR5B12 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0.02) benign(0.41) TCGA-EE-A183-06 11 58601914 58601914 C T GLYATL2 Silent p.K291K 0.19 TCGA-EE-A183-06 11 58602030 58602030 C T GLYATL2 Missense_Mutation p.E253K 0.11 tolerated(0.74) benign(0) TCGA-EE-A183-06 11 59863043 59863043 C T MS4A2 Missense_Mutation p.R217C 0.17 tolerated(0.08) probably_damaging(0.98) TCGA-EE-A183-06 11 6007440 6007440 G A OR52L1 Nonsense_Mutation p.Q241* 0.16 TCGA-EE-A183-06 11 62996992 62996992 G A SLC22A25 Missense_Mutation p.L45F 0.11 deleterious(0) benign(0.375) TCGA-EE-A183-06 11 63884172 63884172 G A FLRT1 Missense_Mutation p.D145N 0.14 tolerated(0.47) benign(0.008) TCGA-EE-A183-06 11 64012207 64012207 T C PPP1R14B 3'UTR 0.11 TCGA-EE-A183-06 11 6477301 6477301 C T TRIM3 Splice_Site p.X511_splice 0.15 TCGA-EE-A183-06 11 64803055 64803055 C T SNX15 Missense_Mutation p.T195I 0.14 tolerated(0.24) benign(0.002) TCGA-EE-A183-06 11 65268186 65268186 C T MALAT1 RNA 0.20 TCGA-EE-A183-06 11 65793416 65793416 C T CATSPER1 Silent p.R145R 0.17 TCGA-EE-A183-06 11 66083678 66083678 G A CD248 Missense_Mutation p.P274L 0.20 tolerated(0.07) possibly_damaging(0.766) TCGA-EE-A183-06 11 66083679 66083679 G A CD248 Missense_Mutation p.P274S 0.19 tolerated(0.17) possibly_damaging(0.665) TCGA-EE-A183-06 11 6662608 6662608 G A DCHS1 Silent p.F79F 0.26 TCGA-EE-A183-06 11 67434442 67434442 C T ALDH3B2 5'UTR 0.18 TCGA-EE-A183-06 11 67789249 67789249 C T ALDH3B1 Silent p.I285I 0.20 TCGA-EE-A183-06 11 6806562 6806562 C T OR2AG1 Silent p.A98A 0.26 TCGA-EE-A183-06 11 68216286 68216286 C T LRP5 Silent p.I1532I 0.14 TCGA-EE-A183-06 11 68216416 68216416 C T LRP5 Missense_Mutation p.P1576S 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A183-06 11 6898777 6898777 C T OR10A4 Missense_Mutation p.A300V 0.13 tolerated(0.41) benign(0.001) TCGA-EE-A183-06 11 71238891 71238891 G A KRTAP5-7 3'UTR 0.22 TCGA-EE-A183-06 11 73007862 73007862 G A P2RY6 Missense_Mutation p.R100H 0.16 deleterious(0) probably_damaging(0.976) TCGA-EE-A183-06 11 74013503 74013503 G A P4HA3 Nonsense_Mutation p.Q160* 0.20 TCGA-EE-A183-06 11 74716820 74716820 C T NEU3 Silent p.F223F 0.15 TCGA-EE-A183-06 11 76372307 76372307 C T LRRC32 Silent p.A110A 0.18 TCGA-EE-A183-06 11 76868390 76868390 G A MYO7A Silent p.K267K 0.40 TCGA-EE-A183-06 11 8111203 8111203 C T TUB Missense_Mutation p.R84W 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 11 8435184 8435184 C T STK33 Nonsense_Mutation p.W401* 0.12 TCGA-EE-A183-06 11 85436427 85436427 G A SYTL2 Missense_Mutation p.A358V 0.26 tolerated(0.13) possibly_damaging(0.521) TCGA-EE-A183-06 11 86120405 86120405 T C CCDC81 Missense_Mutation p.Y406H 0.16 tolerated(0.38) benign(0.017) TCGA-EE-A183-06 11 89402614 89402614 G T FOLH1B RNA 0.12 TCGA-EE-A183-06 11 89774485 89774485 G A TRIM49C Missense_Mutation p.G376R 0.12 deleterious(0.01) benign(0.248) TCGA-EE-A183-06 11 89896572 89896572 G A NAALAD2 Silent p.R390R 0.17 TCGA-EE-A183-06 11 89936519 89936519 T C CHORDC1 Missense_Mutation p.N249S 0.22 tolerated(0.13) benign(0.41) TCGA-EE-A183-06 12 100491171 100491171 G A UHRF1BP1L Missense_Mutation p.S214L 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A183-06 12 104517131 104517131 G C NFYB Missense_Mutation p.A101G 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 12 109703001 109703001 C T ACACB Silent p.I2343I 0.16 TCGA-EE-A183-06 12 119909919 119909919 C T CCDC60 Silent p.F97F 0.15 TCGA-EE-A183-06 12 120783433 120783433 G A MSI1 Silent p.G350G 0.13 TCGA-EE-A183-06 12 122684825 122684825 C T LRRC43 Missense_Mutation p.P480L 0.17 tolerated(0.14) benign(0.349) TCGA-EE-A183-06 12 12274052 12274053 GC A LRP6 3'UTR 0.22 TCGA-EE-A183-06 12 124289471 124289471 G A DNAH10 Silent p.L839L 0.14 TCGA-EE-A183-06 12 13102984 13102984 G A GPRC5D Missense_Mutation p.S112F 0.19 tolerated(1) benign(0.026) TCGA-EE-A183-06 12 132554042 132554042 C T EP400 Silent p.I2959I 0.13 TCGA-EE-A183-06 12 14927371 14927371 T C H2AFJ 5'UTR 0.26 TCGA-EE-A183-06 12 21015471 21015471 G A SLCO1B3 Missense_Mutation p.G203R 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A183-06 12 21661379 21661379 C T GOLT1B Silent p.F60F 0.17 TCGA-EE-A183-06 12 23699249 23699249 C T SOX5 Splice_Site p.X533_splice 0.10 TCGA-EE-A183-06 12 23699250 23699250 C T SOX5 Missense_Mutation p.G533R 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A183-06 12 2693694 2693694 C T CACNA1C Silent p.A750A 0.17 TCGA-EE-A183-06 12 27820138 27820138 C T PPFIBP1 Missense_Mutation p.S361F 0.15 deleterious(0.05) possibly_damaging(0.691) TCGA-EE-A183-06 12 28116391 28116391 C T PTHLH Silent p.K138K 0.13 TCGA-EE-A183-06 12 42729760 42729760 C T PPHLN1 Missense_Mutation p.P19L 0.17 deleterious(0.05) benign(0.013) TCGA-EE-A183-06 12 43826561 43826561 C T ADAMTS20 Missense_Mutation p.R925K 0.13 tolerated(0.09) benign(0.159) TCGA-EE-A183-06 12 49721110 49721110 C T TROAP Silent p.T296T 0.10 TCGA-EE-A183-06 12 52159652 52159652 C T SCN8A Silent p.L914L 0.18 TCGA-EE-A183-06 12 52777487 52777487 G A KRT84 Silent p.F214F 0.12 TCGA-EE-A183-06 12 53096842 53096842 C T KRT77 Missense_Mutation p.G126D 0.23 tolerated(0.1) possibly_damaging(0.737) TCGA-EE-A183-06 12 53898929 53898929 T G TARBP2 Silent p.T208T 0.09 TCGA-EE-A183-06 12 54966983 54966983 C T PDE1B Missense_Mutation p.H263Y 0.17 deleterious(0) probably_damaging(0.992) TCGA-EE-A183-06 12 55714509 55714509 C T OR6C1 Silent p.T42T 0.16 TCGA-EE-A183-06 12 55795116 55795116 G A OR6C65 Silent p.L268L 0.15 TCGA-EE-A183-06 12 56087071 56087071 G A ITGA7 Silent p.L860L 0.19 TCGA-EE-A183-06 12 57111517 57111517 G A NACA Intron 0.19 TCGA-EE-A183-06 12 57389215 57389215 G A GPR182 Silent p.V74V 0.17 TCGA-EE-A183-06 12 57960968 57960968 G A KIF5A Silent p.G187G 0.13 TCGA-EE-A183-06 12 66357123 66357123 G A HMGA2 3'UTR 0.13 TCGA-EE-A183-06 12 6943129 6943129 C T LEPREL2 Silent p.S457S 0.30 TCGA-EE-A183-06 12 70931861 70931861 G A PTPRB Intron 0.19 TCGA-EE-A183-06 12 7550882 7550882 C T CD163L1 Silent p.E569E 0.15 TCGA-EE-A183-06 12 7651781 7651781 C T CD163 Missense_Mutation p.G154E 0.09 tolerated(0.19) probably_damaging(0.984) TCGA-EE-A183-06 12 7842822 7842822 C T GDF3 Silent p.R249R 0.13 TCGA-EE-A183-06 12 8073949 8073973 TCCCTTGTTGAGGGAGAGGTGGCTT - SLC2A3 3'UTR 0.28 TCGA-EE-A183-06 12 81205453 81205453 C T LIN7A Missense_Mutation p.G165R 0.22 deleterious(0.04) benign(0.004) TCGA-EE-A183-06 12 91449292 91449292 G A KERA Missense_Mutation p.S256L 0.20 tolerated(0.08) benign(0.001) TCGA-EE-A183-06 12 96076520 96076520 C T NTN4 Nonsense_Mutation p.W491* 0.16 TCGA-EE-A183-06 12 96348739 96348739 G A AMDHD1 Missense_Mutation p.E99K 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 12 96389549 96389549 G A HAL Missense_Mutation p.S47F 0.14 deleterious_low_confidence(0.03) benign(0.282) TCGA-EE-A183-06 13 111176065 111176065 C T RAB20 Missense_Mutation p.D218N 0.14 tolerated(0.08) benign(0.12) TCGA-EE-A183-06 13 114469202 114469202 C T TMEM255B Missense_Mutation p.T54I 0.12 deleterious(0) possibly_damaging(0.856) TCGA-EE-A183-06 13 115090796 115090796 C T CHAMP1 Silent p.F493F 0.14 TCGA-EE-A183-06 13 30066824 30066824 G A MTUS2 Missense_Mutation p.E1193K 0.20 deleterious(0.02) possibly_damaging(0.763) TCGA-EE-A183-06 13 31495937 31495937 C T MEDAG Silent p.I247I 0.09 TCGA-EE-A183-06 13 31513852 31513852 C T TEX26 Missense_Mutation p.S28F 0.09 deleterious(0) probably_damaging(0.981) TCGA-EE-A183-06 13 32376410 32376410 G A RXFP2 Silent p.R711R 0.19 TCGA-EE-A183-06 13 32798487 32798487 C T FRY Silent p.L1627L 0.11 TCGA-EE-A183-06 13 36158098 36158098 G A NBEA Missense_Mutation p.D2367N 0.22 tolerated(0.05) benign(0.102) TCGA-EE-A183-06 13 39263573 39263573 C T FREM2 Missense_Mutation p.R698C 0.17 tolerated(0.06) benign(0.394) TCGA-EE-A183-06 13 46357980 46357980 C T SIAH3 Nonsense_Mutation p.W116* 0.21 TCGA-EE-A183-06 13 52508944 52508944 C T ATP7B Missense_Mutation p.G1449E 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-EE-A183-06 13 70549773 70549773 T C KLHL1 Missense_Mutation p.N220S 0.12 tolerated(0.43) benign(0.065) TCGA-EE-A183-06 13 79190253 79190253 G A RNF219 Missense_Mutation p.S548L 0.15 tolerated(0.08) benign(0.177) TCGA-EE-A183-06 13 80911527 80911527 G A SPRY2 Missense_Mutation p.A105V 0.16 tolerated(0.39) benign(0.004) TCGA-EE-A183-06 14 101350961 101350961 C T RTL1 Silent p.K55K 0.23 TCGA-EE-A183-06 14 103440442 103440442 G A CDC42BPB Missense_Mutation p.R518C 0.18 deleterious(0) possibly_damaging(0.88) TCGA-EE-A183-06 14 106208520 106208520 G A IGHG1 Missense_Mutation p.P127L 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A183-06 14 106235703 106235703 G A IGHG3 Silent p.F335F 0.12 TCGA-EE-A183-06 14 20019837 20019837 G A POTEM Silent p.F128F 0.09 TCGA-EE-A183-06 14 21360228 21360228 G A RNASE3 Missense_Mutation p.R128K 0.19 tolerated(0.3) benign(0.008) TCGA-EE-A183-06 14 22102213 22102213 G A OR10G2 Silent p.F262F 0.15 TCGA-EE-A183-06 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.17 deleterious(0.04) benign(0.202) TCGA-EE-A183-06 14 22265839 22265839 G A TRAV8-1 Missense_Mutation p.G41E 0.12 deleterious(0.01) benign(0.01) TCGA-EE-A183-06 14 22564645 22564645 C T TRDV1 Silent p.S32S 0.17 TCGA-EE-A183-06 14 23871969 23871969 G A MYH6 Silent p.F313F 0.28 TCGA-EE-A183-06 14 23896073 23896073 C T MYH7 Missense_Mutation p.E653K 0.26 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A183-06 14 31191117 31191117 C T SCFD1 Silent p.F588F 0.11 TCGA-EE-A183-06 14 31817009 31817009 G A HEATR5A Missense_Mutation p.S645F 0.17 deleterious(0) possibly_damaging(0.575) TCGA-EE-A183-06 14 35263973 35263973 G A BAZ1A Missense_Mutation p.P449S 0.12 deleterious(0) probably_damaging(0.992) TCGA-EE-A183-06 14 50750674 50750674 G A L2HGDH Silent p.F206F 0.15 TCGA-EE-A183-06 14 51477128 51477128 C T TRIM9 Missense_Mutation p.E376K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 14 52472502 52472502 C T NID2 Missense_Mutation p.R1357Q 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A183-06 14 55309775 55309775 G A GCH1 3'UTR 0.17 TCGA-EE-A183-06 14 57114104 57114104 C T TMEM260 Silent p.F671F 0.12 TCGA-EE-A183-06 14 60616224 60616224 C T DHRS7 Missense_Mutation p.M273I 0.14 tolerated(0.61) benign(0.002) TCGA-EE-A183-06 14 63174573 63174573 G A KCNH5 Missense_Mutation p.R874C 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A183-06 14 64519011 64519011 C T SYNE2 Missense_Mutation p.P2794S 0.09 benign(0.065) TCGA-EE-A183-06 14 65008275 65008275 C T HSPA2 Silent p.F236F 0.10 TCGA-EE-A183-06 14 69371394 69371394 G A ACTN1 Silent p.I218I 0.18 TCGA-EE-A183-06 14 74083848 74083848 T C ACOT6 5'UTR 0.16 TCGA-EE-A183-06 14 79175787 79175787 G A NRXN3 Silent p.L110L 0.24 TCGA-EE-A183-06 14 80164238 80164238 G A NRXN3 Silent p.A921A 0.26 TCGA-EE-A183-06 14 88945348 88945348 G A PTPN21 Silent p.A809A 0.10 TCGA-EE-A183-06 14 90745472 90745472 G A NRDE2 Silent p.S1101S 0.21 TCGA-EE-A183-06 14 90798277 90798277 T C NRDE2 5'UTR 0.17 TCGA-EE-A183-06 14 91124698 91124698 C T TTC7B Missense_Mutation p.E396K 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 15 102346078 102346078 C T OR4F6 Silent p.D52D 0.33 TCGA-EE-A183-06 15 102346092 102346092 C T OR4F6 Missense_Mutation p.S57F 0.33 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-EE-A183-06 15 20644853 20644853 C T HERC2P3 RNA 0.16 TCGA-EE-A183-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.12 tolerated(0.3) benign(0.009) TCGA-EE-A183-06 15 24921801 24921801 C T NPAP1 Missense_Mutation p.P263S 0.10 tolerated(1) benign(0.135) TCGA-EE-A183-06 15 24922351 24922351 C T NPAP1 Missense_Mutation p.T446I 0.09 tolerated(0.55) benign(0.193) TCGA-EE-A183-06 15 24924364 24924364 C T NPAP1 Missense_Mutation p.P1117L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-EE-A183-06 15 25420114 25420114 G A SNORD115-3 RNA 0.20 TCGA-EE-A183-06 15 31342697 31342697 C T TRPM1 Missense_Mutation p.G468E 0.26 tolerated(0.11) possibly_damaging(0.517) TCGA-EE-A183-06 15 43827390 43827390 G A PPIP5K1 Missense_Mutation p.P1262S 0.15 tolerated_low_confidence(0.2) benign(0.002) TCGA-EE-A183-06 15 45694564 45694564 C T SPATA5L1 5'UTR 0.40 TCGA-EE-A183-06 15 48704768 48704768 C T FBN1 Missense_Mutation p.E2742K 0.21 benign(0.002) TCGA-EE-A183-06 15 49776595 49776595 G A FGF7 Missense_Mutation p.G160E 0.17 tolerated(0.06) probably_damaging(1) TCGA-EE-A183-06 15 55790561 55790561 T C DYX1C1 5'UTR 0.35 TCGA-EE-A183-06 15 57731321 57731321 G A CGNL1 Missense_Mutation p.R375Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 15 62456218 62456218 G A C2CD4B Silent p.D322D 0.12 TCGA-EE-A183-06 15 65219162 65219162 C T ANKDD1A Silent p.L178L 0.10 TCGA-EE-A183-06 15 65677350 65677350 G T IGDCC4 Missense_Mutation p.P1095H 0.33 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A183-06 15 70970503 70970503 T G UACA Missense_Mutation p.K312Q 0.33 deleterious(0.03) benign(0.023) TCGA-EE-A183-06 15 72050291 72050291 G A THSD4 Missense_Mutation p.M822I 0.44 deleterious(0.01) benign(0.024) TCGA-EE-A183-06 15 74327994 74327994 C T PML Intron 0.16 TCGA-EE-A183-06 15 84581959 84581959 G A ADAMTSL3 Missense_Mutation p.E606K 0.22 tolerated(0.22) possibly_damaging(0.662) TCGA-EE-A183-06 15 85411358 85411358 G A ALPK3 Missense_Mutation p.E1799K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 15 92981673 92981673 C T ST8SIA2 Silent p.F127F 0.12 TCGA-EE-A183-06 16 10273953 10273953 G A GRIN2A Nonsense_Mutation p.Q106* 0.19 TCGA-EE-A183-06 16 11001701 11001701 G A CIITA Silent p.R784R 0.19 TCGA-EE-A183-06 16 12060121 12060121 C T TNFRSF17 Missense_Mutation p.S67F 0.25 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A183-06 16 14306221 14306221 C T MKL2 Silent p.S77S 0.12 TCGA-EE-A183-06 16 1719023 1719023 C T CRAMP1L Missense_Mutation p.P1119L 0.15 deleterious(0.03) probably_damaging(1) TCGA-EE-A183-06 16 19471576 19471576 C T TMC5 Silent p.S356S 0.11 TCGA-EE-A183-06 16 20563565 20563565 C T ACSM2B Nonsense_Mutation p.W265* 0.18 TCGA-EE-A183-06 16 21042505 21042505 C T DNAH3 Nonsense_Mutation p.W1767* 0.11 TCGA-EE-A183-06 16 21213434 21213434 C T ZP2 Silent p.T426T 0.16 TCGA-EE-A183-06 16 2258965 2258965 C G MLST8 3'UTR 0.29 TCGA-EE-A183-06 16 2258966 2258966 C T MLST8 3'UTR 0.30 TCGA-EE-A183-06 16 24226007 24226007 G A PRKCB Missense_Mutation p.R631Q 0.12 tolerated(0.35) benign(0.011) TCGA-EE-A183-06 16 24942649 24942649 T A ARHGAP17 Silent p.S657S 0.11 TCGA-EE-A183-06 16 27078340 27078340 C T C16orf82 RNA 0.26 TCGA-EE-A183-06 16 27786297 27786297 C T KIAA0556 Silent p.S1447S 0.22 TCGA-EE-A183-06 16 29848075 29848075 C T MVP Silent p.F235F 0.26 TCGA-EE-A183-06 16 46717453 46717453 C T VPS35 Silent p.V23V 0.12 TCGA-EE-A183-06 16 50357512 50357512 G - BRD7 Frame_Shift_Del p.Q477Kfs*29 0.19 TCGA-EE-A183-06 16 50711414 50711414 C T SNX20 Silent p.G8G 0.12 TCGA-EE-A183-06 16 57243085 57243085 C T RSPRY1 Missense_Mutation p.P168S 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 16 58072257 58072257 C T MMP15 Silent p.A133A 0.14 TCGA-EE-A183-06 16 61687944 61687944 A T CDH8 Missense_Mutation p.D656E 0.18 tolerated(1) probably_damaging(0.992) TCGA-EE-A183-06 16 61687968 61687968 T A CDH8 Missense_Mutation p.K648N 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A183-06 16 67698988 67698988 G T ENKD1 Silent p.R122R 0.12 TCGA-EE-A183-06 16 67914622 67914622 C T EDC4 Missense_Mutation p.R754C 0.12 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EE-A183-06 16 70190389 70190389 C T PDPR Silent p.F749F 0.12 TCGA-EE-A183-06 16 71570920 71570920 G A CHST4 Missense_Mutation p.E114K 0.16 tolerated(1) benign(0.002) TCGA-EE-A183-06 16 7383033 7383033 C T RBFOX1 Missense_Mutation p.P11S 0.15 tolerated_low_confidence(0.47) benign(0.003) TCGA-EE-A183-06 16 76572111 76572111 C T CNTNAP4 Missense_Mutation p.H959Y 0.24 tolerated(1) benign(0.049) TCGA-EE-A183-06 16 82033081 82033081 G A SDR42E1 Silent p.L273L 0.12 TCGA-EE-A183-06 16 84906696 84906696 G A CRISPLD2 Silent p.V360V 0.11 TCGA-EE-A183-06 16 87454265 87454265 G T ZCCHC14 Missense_Mutation p.P163T 0.16 tolerated(0.43) benign(0.421) TCGA-EE-A183-06 16 89349891 89349895 TTCCT - ANKRD11 Frame_Shift_Del p.R1019Gfs*14 0.32 TCGA-EE-A183-06 17 10304459 10304459 C T MYH8 Missense_Mutation p.R1053K 0.19 tolerated(0.15) possibly_damaging(0.569) TCGA-EE-A183-06 17 10357143 10357143 G A MYH4 Silent p.I917I 0.14 TCGA-EE-A183-06 17 10358013 10358013 C T MYH4 Silent p.E850E 0.19 TCGA-EE-A183-06 17 10364338 10364338 C T MYH4 Missense_Mutation p.E348K 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 17 10404624 10404624 C T MYH1 Missense_Mutation p.D1181N 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A183-06 17 10440749 10440749 G A MYH2 Silent p.F566F 0.14 TCGA-EE-A183-06 17 12655756 12655756 G A MYOCD Missense_Mutation p.R384Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 17 18053778 18053778 G A MYO15A Missense_Mutation p.M2416I 0.14 unknown(0) TCGA-EE-A183-06 17 18150579 18150579 G A FLII Silent p.S860S 0.13 TCGA-EE-A183-06 17 18150580 18150580 G A FLII Missense_Mutation p.S860F 0.13 deleterious(0.05) benign(0.025) TCGA-EE-A183-06 17 2266311 2266311 G A SGSM2 Silent p.K185K 0.19 TCGA-EE-A183-06 17 26696681 26696681 C T VTN Missense_Mutation p.E126K 0.24 tolerated(0.25) benign(0.231) TCGA-EE-A183-06 17 26817538 26817538 G A SLC13A2 Missense_Mutation p.V149M 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A183-06 17 3030680 3030680 G A OR1G1 Missense_Mutation p.H56Y 0.14 deleterious(0) probably_damaging(0.954) TCGA-EE-A183-06 17 32583280 32583280 C T CCL2 Missense_Mutation p.T39I 0.20 tolerated(0.43) benign(0.014) TCGA-EE-A183-06 17 33495231 33495231 G A UNC45B Missense_Mutation p.E435K 0.18 tolerated(0.1) benign(0.305) TCGA-EE-A183-06 17 33680383 33680383 C T SLFN11 Missense_Mutation p.E632K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 17 3417291 3417291 G T TRPV3 Missense_Mutation p.Q766K 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A183-06 17 36700076 36700076 C T SRCIN1 Silent p.R1133R 0.20 TCGA-EE-A183-06 17 36708189 36708189 C T SRCIN1 Missense_Mutation p.G887E 0.17 tolerated(0.06) benign(0.246) TCGA-EE-A183-06 17 36708190 36708190 C T SRCIN1 Missense_Mutation p.G887R 0.18 deleterious(0.03) benign(0.35) TCGA-EE-A183-06 17 37188291 37188291 C T CTD-2206N4.2 5'Flank 0.15 TCGA-EE-A183-06 17 39254046 39254046 G A KRTAP4-8 Silent p.S97S 0.10 TCGA-EE-A183-06 17 39388752 39388752 C T KRTAP9-3 5'UTR 0.22 TCGA-EE-A183-06 17 39623149 39623149 G A KRT32 Silent p.Y143Y 0.24 TCGA-EE-A183-06 17 41174290 41174290 G A VAT1 Missense_Mutation p.S17F 0.22 deleterious(0.02) benign(0.172) TCGA-EE-A183-06 17 42335162 42335162 C T SLC4A1 Silent p.R432R 0.32 TCGA-EE-A183-06 17 42338085 42338085 C T SLC4A1 Silent p.G89G 0.19 TCGA-EE-A183-06 17 43585530 43585530 G A LRRC37A4P Intron 0.17 TCGA-EE-A183-06 17 44845865 44845865 C T WNT3 Missense_Mutation p.D297N 0.16 deleterious(0.02) benign(0.375) TCGA-EE-A183-06 17 46607031 46607031 C T HOXB1 Missense_Mutation p.E262K 0.18 deleterious(0) probably_damaging(0.973) TCGA-EE-A183-06 17 46627737 46627737 G A HOXB3 Nonsense_Mutation p.Q419* 0.14 TCGA-EE-A183-06 17 48268826 48268826 G A COL1A1 Missense_Mutation p.P718L 0.16 possibly_damaging(0.48) TCGA-EE-A183-06 17 48761318 48761318 C T ABCC3 Silent p.I1321I 0.09 TCGA-EE-A183-06 17 4995975 4995975 C T ZFP3 Silent p.P392P 0.20 TCGA-EE-A183-06 17 54925305 54925305 C T DGKE Missense_Mutation p.P256L 0.09 deleterious(0.04) benign(0.257) TCGA-EE-A183-06 17 57043131 57043131 C T PPM1E Silent p.F220F 0.17 TCGA-EE-A183-06 17 57665345 57665345 C T DHX40 Silent p.L505L 0.19 TCGA-EE-A183-06 17 61607722 61607722 G A KCNH6 Missense_Mutation p.G165E 0.19 tolerated(0.11) benign(0.131) TCGA-EE-A183-06 17 65688717 65688717 G A PITPNC1 Missense_Mutation p.E238K 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 17 65714118 65714118 C A NOL11 Missense_Mutation p.P19T 0.20 tolerated(0.16) benign(0.125) TCGA-EE-A183-06 17 65714119 65714119 C T NOL11 Missense_Mutation p.P19L 0.22 tolerated(0.1) benign(0.007) TCGA-EE-A183-06 17 66914290 66914290 G A ABCA8 Missense_Mutation p.P609S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 17 67092421 67092421 C T ABCA6 Missense_Mutation p.R1123K 0.09 tolerated(0.25) benign(0.004) TCGA-EE-A183-06 17 67218787 67218787 G A ABCA10 Missense_Mutation p.P29L 0.16 tolerated(0.64) benign(0.002) TCGA-EE-A183-06 17 67218788 67218788 G A ABCA10 Missense_Mutation p.P29S 0.18 tolerated(0.85) benign(0.006) TCGA-EE-A183-06 17 71418541 71418541 C T SDK2 Missense_Mutation p.D644N 0.14 tolerated(0.08) possibly_damaging(0.884) TCGA-EE-A183-06 17 72349661 72349661 G A KIF19 Nonsense_Mutation p.W750* 0.21 TCGA-EE-A183-06 17 73870972 73870972 G A TRIM47 Silent p.S503S 0.18 TCGA-EE-A183-06 17 77081374 77081374 C T ENGASE Silent p.A550A 0.16 TCGA-EE-A183-06 17 7748977 7748977 C T KDM6B Silent p.P35P 0.13 TCGA-EE-A183-06 17 8015463 8015463 C T ALOXE3 Silent p.K376K 0.14 TCGA-EE-A183-06 17 80863831 80863831 C T TBCD Silent p.S608S 0.25 TCGA-EE-A183-06 17 8141408 8141408 G A CTC1 Silent p.G196G 0.14 TCGA-EE-A183-06 18 13056570 13056570 C T CEP192 Silent p.S1327S 0.15 TCGA-EE-A183-06 18 19153719 19153719 A G ESCO1 Silent p.C362C 0.16 TCGA-EE-A183-06 18 25565542 25565542 G A CDH2 Missense_Mutation p.P642L 0.21 deleterious(0.05) possibly_damaging(0.7) TCGA-EE-A183-06 18 25572697 25572697 G A CDH2 Silent p.I422I 0.10 TCGA-EE-A183-06 18 28971161 28971161 T C DSG4 Silent p.L269L 0.18 TCGA-EE-A183-06 18 29046573 29046573 G A DSG3 Missense_Mutation p.E498K 0.12 deleterious(0.02) benign(0.032) TCGA-EE-A183-06 18 30260436 30260436 G A KLHL14 Silent p.S455S 0.09 TCGA-EE-A183-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.36 benign(0.006) TCGA-EE-A183-06 18 40554088 40554088 C T RIT2 Missense_Mutation p.R62K 0.24 tolerated(0.88) possibly_damaging(0.897) TCGA-EE-A183-06 18 43221247 43221247 C T SLC14A2 Silent p.I355I 0.23 TCGA-EE-A183-06 18 43446814 43446814 G A EPG5 Silent p.L2190L 0.14 TCGA-EE-A183-06 18 47421396 47421396 C T MYO5B Missense_Mutation p.S987N 0.14 tolerated(0.3) benign(0.001) TCGA-EE-A183-06 18 48190682 48190682 G A MAPK4 Silent p.Q118Q 0.17 TCGA-EE-A183-06 18 50929236 50929236 C T DCC Missense_Mutation p.P970S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 18 56246161 56246161 T A ALPK2 Missense_Mutation p.Q616L 0.12 deleterious(0.04) possibly_damaging(0.587) TCGA-EE-A183-06 18 56402458 56402458 A T MALT1 Missense_Mutation p.E500D 0.22 deleterious(0.01) benign(0.385) TCGA-EE-A183-06 18 63530167 63530167 C T CDH7 Intron 0.13 TCGA-EE-A183-06 18 74091449 74091449 G A ZNF516 Missense_Mutation p.P874L 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A183-06 18 756706 756706 G A YES1 Missense_Mutation p.P41L 0.10 deleterious(0.05) benign(0.013) TCGA-EE-A183-06 18 8379258 8379258 C T PTPRM Silent p.L1236L 0.19 TCGA-EE-A183-06 19 10071562 10071562 G A COL5A3 Missense_Mutation p.S1619F 0.18 unknown(0) TCGA-EE-A183-06 19 11113773 11113773 C T SMARCA4 Silent p.I627I 0.19 TCGA-EE-A183-06 19 11687164 11687164 G A ACP5 Missense_Mutation p.S210F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 19 11688000 11688000 C A ACP5 Missense_Mutation p.A45S 0.22 tolerated(0.53) benign(0.132) TCGA-EE-A183-06 19 14213634 14213634 G A PRKACA Silent p.S110S 0.11 TCGA-EE-A183-06 19 14213635 14213635 G A PRKACA Missense_Mutation p.S110F 0.10 tolerated(0.11) probably_damaging(0.979) TCGA-EE-A183-06 19 15052941 15052941 T A OR7C2 Missense_Mutation p.I214N 0.15 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-EE-A183-06 19 15807819 15807819 G A CYP4F12 Missense_Mutation p.R500K 0.22 tolerated(0.08) possibly_damaging(0.771) TCGA-EE-A183-06 19 16000293 16000293 G A CYP4F2 Silent p.F286F 0.17 TCGA-EE-A183-06 19 16060702 16060702 G A OR10H4 Silent p.R295R 0.21 TCGA-EE-A183-06 19 17434401 17434401 G A ANO8 Silent p.P1208P 0.33 TCGA-EE-A183-06 19 17611563 17611563 G T SLC27A1 Missense_Mutation p.R505L 0.11 tolerated(0.06) benign(0.041) TCGA-EE-A183-06 19 17752275 17752275 C T UNC13A Missense_Mutation p.D855N 0.15 tolerated(0.08) benign(0.372) TCGA-EE-A183-06 19 17949183 17949183 G A JAK3 Silent p.I486I 0.14 TCGA-EE-A183-06 19 19654824 19654824 C T CILP2 Silent p.F490F 0.18 TCGA-EE-A183-06 19 308851 308851 G A MIER2 Silent p.F353F 0.17 TCGA-EE-A183-06 19 33498930 33498930 C T RHPN2 Silent p.Q250Q 0.14 TCGA-EE-A183-06 19 36206302 36206302 C T ZBTB32 Silent p.G258G 0.22 TCGA-EE-A183-06 19 36218841 36218841 C G KMT2B Silent p.T1484T 0.14 TCGA-EE-A183-06 19 36304054 36304054 A G PRODH2 Missense_Mutation p.C44R 0.15 tolerated_low_confidence(0.14) benign(0.384) TCGA-EE-A183-06 19 36590354 36590354 C T WDR62 Silent p.Y858Y 0.23 TCGA-EE-A183-06 19 37916859 37916859 G A ZNF569 Missense_Mutation p.P50L 0.15 tolerated(0.29) probably_damaging(0.998) TCGA-EE-A183-06 19 38983130 38983130 G A RYR1 Missense_Mutation p.G2043E 0.23 benign(0.04) TCGA-EE-A183-06 19 39230712 39230712 G A CAPN12 Silent p.S236S 0.16 TCGA-EE-A183-06 19 39230713 39230713 G A CAPN12 Missense_Mutation p.S236F 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 19 41077962 41077962 G A SPTBN4 Missense_Mutation p.E2453K 0.19 tolerated(0.07) possibly_damaging(0.621) TCGA-EE-A183-06 19 41442010 41442010 G A CYP2B7P RNA 0.20 TCGA-EE-A183-06 19 42471437 42471437 C T ATP1A3 Missense_Mutation p.E1006K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 19 42583936 42583936 C T ZNF574 Missense_Mutation p.S393L 0.14 tolerated(0.06) benign(0.004) TCGA-EE-A183-06 19 42879760 42879760 C T MEGF8 Silent p.S2390S 0.24 TCGA-EE-A183-06 19 43406446 43406446 G A PSG6 3'Flank 0.24 TCGA-EE-A183-06 19 43698625 43698625 C T PSG4 Silent p.G370G 0.20 TCGA-EE-A183-06 19 44792362 44792362 C T ZNF235 Missense_Mutation p.G409E 0.15 deleterious(0.03) probably_damaging(1) TCGA-EE-A183-06 19 45033537 45033537 C T CEACAM20 RNA 0.11 TCGA-EE-A183-06 19 45033543 45033543 A C CEACAM20 RNA 0.11 TCGA-EE-A183-06 19 45731010 45731010 C T EXOC3L2 Missense_Mutation p.R105Q 0.28 tolerated(0.23) possibly_damaging(0.874) TCGA-EE-A183-06 19 49134171 49134171 C T DBP Missense_Mutation p.V301I 0.14 deleterious(0) possibly_damaging(0.705) TCGA-EE-A183-06 19 49355541 49355541 C T PLEKHA4 Missense_Mutation p.E457K 0.14 deleterious(0) benign(0.41) TCGA-EE-A183-06 19 50315587 50315587 G A FUZ Missense_Mutation p.T80I 0.27 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A183-06 19 50730172 50730172 C T MYH14 Missense_Mutation p.R275C 0.30 deleterious(0) probably_damaging(0.934) TCGA-EE-A183-06 19 51330339 51330339 G A KLK15 Silent p.V92V 0.15 TCGA-EE-A183-06 19 52034553 52034553 G A SIGLEC6 Silent p.L96L 0.10 TCGA-EE-A183-06 19 52196141 52196141 C A SPACA6P-AS RNA 0.31 TCGA-EE-A183-06 19 52272265 52272265 C T FPR2 Silent p.F118F 0.15 TCGA-EE-A183-06 19 55175422 55175422 G A LILRB4 Missense_Mutation p.G94E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 19 55247512 55247512 C T KIR3DL3 Silent p.I394I 0.23 TCGA-EE-A183-06 19 55281317 55281317 C T KIR2DL1 Silent p.V5V 0.11 TCGA-EE-A183-06 19 55614869 55614869 C T PPP1R12C Silent p.L213L 0.25 TCGA-EE-A183-06 19 5594006 5594006 C T SAFB2 Silent p.E701E 0.45 TCGA-EE-A183-06 19 55994798 55994798 C T ZNF628 Silent p.P746P 0.27 TCGA-EE-A183-06 19 56369493 56369493 C T NLRP4 Missense_Mutation p.S245L 0.24 deleterious(0.05) possibly_damaging(0.534) TCGA-EE-A183-06 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A183-06 19 56733670 56733670 C T ZSCAN5A Silent p.G255G 0.21 TCGA-EE-A183-06 19 5748225 5748225 C T CATSPERD Missense_Mutation p.S288F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 19 6501323 6501323 G A TUBB4A Silent p.I84I 0.24 TCGA-EE-A183-06 19 6665134 6665134 C T TNFSF14 Missense_Mutation p.E176K 0.18 deleterious(0) probably_damaging(0.986) TCGA-EE-A183-06 19 7676625 7676625 G A CAMSAP3 Missense_Mutation p.D443N 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A183-06 19 8661990 8661990 G A ADAMTS10 Silent p.A307A 0.12 TCGA-EE-A183-06 19 8994489 8994489 G A MUC16 Silent p.N13801N 0.18 TCGA-EE-A183-06 19 9226251 9226251 G A OR7G1 Silent p.L63L 0.12 TCGA-EE-A183-06 19 9237444 9237444 G A OR7G3 Silent p.F61F 0.13 TCGA-EE-A183-06 19 9406113 9406113 G A ZNF699 3'UTR 0.15 TCGA-EE-A183-06 19 9646888 9646888 G A ZNF426 Silent p.S7S 0.20 TCGA-EE-A183-06 1 110596512 110596512 C T STRIP1 Missense_Mutation p.S831F 0.16 deleterious(0.01) benign(0.276) TCGA-EE-A183-06 1 1117765 1117765 C T TTLL10 Silent p.F285F 0.24 TCGA-EE-A183-06 1 111965562 111965562 G A OVGP1 Missense_Mutation p.R199C 0.20 tolerated(0.09) benign(0.062) TCGA-EE-A183-06 1 114380244 114380244 G A PTPN22 Missense_Mutation p.S593F 0.10 tolerated(0.68) benign(0.182) TCGA-EE-A183-06 1 12856096 12856096 C T PRAMEF1 Missense_Mutation p.S459F 0.09 tolerated(0.13) possibly_damaging(0.804) TCGA-EE-A183-06 1 1372309 1372309 C T VWA1 Missense_Mutation p.P26S 0.19 tolerated(0.15) benign(0.011) TCGA-EE-A183-06 1 142713863 142713863 C T RP11-417J8.6 RNA 0.09 TCGA-EE-A183-06 1 145561548 145561548 C T ANKRD35 Silent p.I412I 0.35 TCGA-EE-A183-06 1 151090774 151090774 C T GABPB2 3'UTR 0.20 TCGA-EE-A183-06 1 151506472 151506472 C T CGN Silent p.L922L 0.16 TCGA-EE-A183-06 1 152059676 152059676 C T TCHHL1 Missense_Mutation p.R161K 0.20 tolerated(0.29) benign(0.002) TCGA-EE-A183-06 1 152188491 152188491 C T HRNR Missense_Mutation p.G1872S 0.08 unknown(0) TCGA-EE-A183-06 1 152328532 152328532 G A FLG2 Missense_Mutation p.S577F 0.26 unknown(0) TCGA-EE-A183-06 1 152648908 152648908 C T LCE2C 3'UTR 0.35 TCGA-EE-A183-06 1 153043083 153043083 G A SPRR2B 3'UTR 0.38 TCGA-EE-A183-06 1 153580154 153580154 C T S100A16 Silent p.R56R 0.18 TCGA-EE-A183-06 1 154164395 154164395 C T TPM3 Missense_Mutation p.E34K 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A183-06 1 155257825 155257825 C T HCN3 Silent p.P632P 0.20 TCGA-EE-A183-06 1 156351917 156351917 G A RHBG Missense_Mutation p.G346E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 1 157494336 157494336 G A FCRL5 Missense_Mutation p.R658C 0.27 deleterious(0.04) benign(0.262) TCGA-EE-A183-06 1 157504474 157504474 C T FCRL5 Silent p.G537G 0.27 TCGA-EE-A183-06 1 157514175 157514175 G A FCRL5 Missense_Mutation p.L241F 0.19 tolerated(0.7) benign(0.266) TCGA-EE-A183-06 1 159802950 159802950 G A SLAMF8 Missense_Mutation p.D218N 0.18 tolerated(0.21) benign(0.005) TCGA-EE-A183-06 1 160340881 160340881 C T NHLH1 Silent p.A120A 0.13 TCGA-EE-A183-06 1 16073508 16073508 C T TMEM82 Missense_Mutation p.L302F 0.21 deleterious(0) probably_damaging(0.971) TCGA-EE-A183-06 1 161018272 161018272 C T ARHGAP30 Missense_Mutation p.G847R 0.22 deleterious_low_confidence(0.04) benign(0.014) TCGA-EE-A183-06 1 161137200 161137200 C A PPOX Silent p.R88R 0.27 TCGA-EE-A183-06 1 161200969 161200969 C T NR1I3 Missense_Mutation p.R254Q 0.35 deleterious(0) benign(0.366) TCGA-EE-A183-06 1 162344318 162344318 G A C1orf111 Silent p.F102F 0.17 TCGA-EE-A183-06 1 16258959 16258959 C A SPEN Nonsense_Mutation p.S2075* 0.14 TCGA-EE-A183-06 1 167097058 167097058 G A DUSP27 Missense_Mutation p.R897Q 0.33 tolerated(0.15) benign(0.007) TCGA-EE-A183-06 1 167407878 167407878 G A CD247 Silent p.L77L 0.18 TCGA-EE-A183-06 1 175052918 175052918 G A TNN Missense_Mutation p.D361N 0.24 tolerated(0.07) benign(0.432) TCGA-EE-A183-06 1 175375497 175375497 G A TNR Silent p.I118I 0.23 TCGA-EE-A183-06 1 182635159 182635159 C T RGS8 Silent p.S64S 0.19 TCGA-EE-A183-06 1 186045683 186045683 C T HMCN1 Missense_Mutation p.P2805L 0.21 probably_damaging(0.999) TCGA-EE-A183-06 1 186276033 186276033 G A PRG4 Silent p.K394K 0.23 TCGA-EE-A183-06 1 196801091 196801091 G A CFHR1 Missense_Mutation p.D319N 0.31 tolerated(0.18) benign(0.174) TCGA-EE-A183-06 1 200586866 200586866 G A KIF14 Missense_Mutation p.S329F 0.29 deleterious(0.01) possibly_damaging(0.726) TCGA-EE-A183-06 1 203465257 203465257 G A OPTC Missense_Mutation p.E42K 0.36 tolerated(0.63) benign(0.008) TCGA-EE-A183-06 1 204942512 204942512 G A NFASC Missense_Mutation p.G415D 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 1 207787797 207787797 G A CR1 Missense_Mutation p.M2208I 0.40 tolerated(0.09) benign(0.119) TCGA-EE-A183-06 1 209773330 209773330 G A CAMK1G Missense_Mutation p.G32E 0.38 tolerated(0.07) probably_damaging(1) TCGA-EE-A183-06 1 209956442 209956442 G A C1orf74 Missense_Mutation p.P180S 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 1 20998650 20998650 C T KIF17 Missense_Mutation p.E835K 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 1 21050850 21050850 C T SH2D5 Intron 0.20 TCGA-EE-A183-06 1 211533227 211533227 C T TRAF5 Intron 0.48 TCGA-EE-A183-06 1 227920604 227920604 G A JMJD4 Missense_Mutation p.P362L 0.21 tolerated(0.06) benign(0.017) TCGA-EE-A183-06 1 22973765 22973765 G A C1QC Missense_Mutation p.G76E 0.32 deleterious(0) probably_damaging(0.992) TCGA-EE-A183-06 1 243329328 243329328 A T CEP170 Missense_Mutation p.L645H 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 1 24434601 24434601 G A MYOM3 Intron 0.31 TCGA-EE-A183-06 1 247319799 247319799 T A ZNF124 3'UTR 0.50 TCGA-EE-A183-06 1 247614572 247614572 C T OR2B11 Missense_Mutation p.R238Q 0.29 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A183-06 1 247695301 247695301 C T OR2C3 Silent p.G171G 0.27 TCGA-EE-A183-06 1 247752457 247752457 G A OR2G2 Missense_Mutation p.A266T 0.32 tolerated(0.12) possibly_damaging(0.61) TCGA-EE-A183-06 1 247978629 247978629 C T OR14A16 Missense_Mutation p.D135N 0.26 tolerated(1) benign(0.001) TCGA-EE-A183-06 1 248569717 248569717 C T OR2T1 Missense_Mutation p.T141I 0.34 deleterious(0.04) benign(0.126) TCGA-EE-A183-06 1 248685258 248685258 C T OR2G6 Missense_Mutation p.A104V 0.30 tolerated(0.57) benign(0.015) TCGA-EE-A183-06 1 248685416 248685416 C T OR2G6 Silent p.L157L 0.17 TCGA-EE-A183-06 1 248845033 248845033 G A OR14I1 Silent p.F191F 0.18 TCGA-EE-A183-06 1 2540832 2540832 C T MMEL1 Missense_Mutation p.D161N 0.37 deleterious(0.03) possibly_damaging(0.88) TCGA-EE-A183-06 1 27278454 27278454 G A C1orf172 Missense_Mutation p.R140C 0.14 tolerated(0.14) benign(0.001) TCGA-EE-A183-06 1 27630175 27630175 C T WDTC1 Missense_Mutation p.S510F 0.15 deleterious(0.02) possibly_damaging(0.729) TCGA-EE-A183-06 1 32623923 32623923 C T KPNA6 Silent p.F129F 0.26 TCGA-EE-A183-06 1 32797291 32797291 A G HDAC1 Missense_Mutation p.E368G 0.12 deleterious(0.01) benign(0.076) TCGA-EE-A183-06 1 34209160 34209160 G A CSMD2 Missense_Mutation p.P592S 0.25 deleterious(0) probably_damaging(0.98) TCGA-EE-A183-06 1 37267467 37267467 G A GRIK3 Silent p.A915A 0.24 TCGA-EE-A183-06 1 3800162 3800162 C T DFFB Silent p.L292L 0.23 TCGA-EE-A183-06 1 39341319 39341319 C T GJA9 Missense_Mutation p.G151E 0.25 deleterious(0.05) benign(0.028) TCGA-EE-A183-06 1 40775826 40775826 C T COL9A2 Missense_Mutation p.G250E 0.15 deleterious(0) probably_damaging(0.931) TCGA-EE-A183-06 1 43779026 43779026 C T TIE1 Silent p.F716F 0.15 TCGA-EE-A183-06 1 44056841 44056841 C T PTPRF Missense_Mutation p.S383L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 1 47610232 47610232 G A CYP4A22 Missense_Mutation p.G303E 0.08 tolerated(0.09) possibly_damaging(0.651) TCGA-EE-A183-06 1 48695058 48695058 G A SLC5A9 Missense_Mutation p.R169Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A183-06 1 57171796 57171796 G A PRKAA2 Missense_Mutation p.R442K 0.11 tolerated(0.51) benign(0.033) TCGA-EE-A183-06 1 60073477 60073477 C T FGGY Silent p.I302I 0.12 TCGA-EE-A183-06 1 67195044 67195044 C T SGIP1 Missense_Mutation p.R614W 0.08 deleterious(0) probably_damaging(0.99) TCGA-EE-A183-06 1 74701089 74701089 T C TNNI3K Intron 0.20 TCGA-EE-A183-06 1 74954902 74954902 G A TNNI3K Missense_Mutation p.M818I 0.18 tolerated(0.2) benign(0) TCGA-EE-A183-06 1 75037329 75037329 C T C1orf173 Silent p.E1355E 0.17 TCGA-EE-A183-06 1 75038351 75038351 C T C1orf173 Missense_Mutation p.E1015K 0.18 tolerated(0.11) benign(0.079) TCGA-EE-A183-06 1 8418746 8418747 GG A RERE Frame_Shift_Del p.P1283Lfs*41 0.27 TCGA-EE-A183-06 1 9079267 9079267 C T SLC2A7 Splice_Site p.X146_splice 0.20 TCGA-EE-A183-06 1 92754650 92754650 C T GLMN Nonsense_Mutation p.W151* 0.23 TCGA-EE-A183-06 1 92754651 92754651 C T GLMN Nonsense_Mutation p.W151* 0.24 TCGA-EE-A183-06 1 94668167 94668167 C T ARHGAP29 Missense_Mutation p.G359E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 1 97547999 97547999 G A DPYD Missense_Mutation p.L932F 0.14 deleterious(0.03) benign(0.142) TCGA-EE-A183-06 1 98039484 98039484 G A DPYD Silent p.L391L 0.20 TCGA-EE-A183-06 1 980620 980620 C T AGRN Silent p.I778I 0.22 TCGA-EE-A183-06 1 982006 982006 C T AGRN Silent p.S1047S 0.23 TCGA-EE-A183-06 20 1456810 1456810 C T SIRPB2 3'UTR 0.20 TCGA-EE-A183-06 20 1551704 1551704 G A SIRPB1 Silent p.F277F 0.16 TCGA-EE-A183-06 20 16729004 16729004 C T OTOR 5'UTR 0.17 TCGA-EE-A183-06 20 23472382 23472382 G A CST8 Silent p.K26K 0.13 TCGA-EE-A183-06 20 2636275 2636275 C T NOP56 Silent p.I264I 0.15 TCGA-EE-A183-06 20 29965099 29965099 C T DEFB118 3'Flank 0.30 TCGA-EE-A183-06 20 30745652 30745652 C T TM9SF4 Missense_Mutation p.P462L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 20 31608131 31608131 C T BPIFB2 Intron 0.29 TCGA-EE-A183-06 20 35533826 35533826 G A SAMHD1 Missense_Mutation p.R451C 0.26 deleterious(0) probably_damaging(0.991) TCGA-EE-A183-06 20 3842943 3842943 C T MAVS Missense_Mutation p.P170S 0.11 tolerated(0.6) benign(0.121) TCGA-EE-A183-06 20 39991017 39991017 G A EMILIN3 Missense_Mutation p.L398F 0.29 deleterious(0) probably_damaging(0.952) TCGA-EE-A183-06 20 39991018 39991018 G A EMILIN3 Silent p.G397G 0.30 TCGA-EE-A183-06 20 40735465 40735465 A T PTPRT Silent p.R1117R 0.15 TCGA-EE-A183-06 20 40735466 40735466 C T PTPRT Missense_Mutation p.R1117H 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 20 42195112 42195112 G A SGK2 Missense_Mutation p.E53K 0.09 tolerated(0.43) benign(0.004) TCGA-EE-A183-06 20 43850925 43850925 G A SEMG2 Missense_Mutation p.G218R 0.15 tolerated(0.09) probably_damaging(1) TCGA-EE-A183-06 20 44174435 44174435 G A EPPIN Intron 0.12 TCGA-EE-A183-06 20 45023166 45023166 G A ELMO2 5'UTR 0.28 TCGA-EE-A183-06 20 46277849 46277849 C T NCOA3 Missense_Mutation p.S1216F 0.15 tolerated(0.2) benign(0.181) TCGA-EE-A183-06 20 47305214 47305214 G A PREX1 Missense_Mutation p.P439S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 20 47700560 47700560 T C CSE1L Intron 0.20 TCGA-EE-A183-06 20 49626525 49626525 G A KCNG1 Silent p.F117F 0.12 TCGA-EE-A183-06 20 50769848 50769848 G A ZFP64 Missense_Mutation p.R295C 0.25 tolerated(0.14) benign(0.089) TCGA-EE-A183-06 20 5157336 5157336 A C CDS2 Missense_Mutation p.I112L 0.10 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A183-06 20 52601928 52601928 C T BCAS1 Silent p.S346S 0.27 TCGA-EE-A183-06 20 52644981 52644981 C A BCAS1 Missense_Mutation p.D225Y 0.13 deleterious(0.03) possibly_damaging(0.505) TCGA-EE-A183-06 20 52644982 52644982 C T BCAS1 Silent p.V224V 0.14 TCGA-EE-A183-06 20 54579025 54579025 T C CBLN4 Missense_Mutation p.N68S 0.17 tolerated(1) benign(0.002) TCGA-EE-A183-06 20 55111330 55111330 G A FAM209B Missense_Mutation p.E118K 0.22 tolerated(0.16) benign(0.122) TCGA-EE-A183-06 20 57828981 57828981 G A ZNF831 Missense_Mutation p.G1406D 0.11 tolerated(0.11) benign(0.272) TCGA-EE-A183-06 20 57876762 57876762 G A EDN3 Nonsense_Mutation p.W117* 0.26 TCGA-EE-A183-06 20 58342270 58342270 G A PHACTR3 Missense_Mutation p.E191K 0.12 tolerated(0.23) benign(0.176) TCGA-EE-A183-06 20 61511132 61511132 G A DIDO1 Missense_Mutation p.P2059L 0.16 possibly_damaging(0.567) TCGA-EE-A183-06 20 62737326 62737326 C T NPBWR2 Missense_Mutation p.D287N 0.24 deleterious(0.04) possibly_damaging(0.883) TCGA-EE-A183-06 20 8717790 8717790 G A PLCB1 Missense_Mutation p.G720E 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-EE-A183-06 20 8755313 8755313 C T PLCB1 Missense_Mutation p.R1020W 0.12 tolerated(0.08) probably_damaging(0.985) TCGA-EE-A183-06 20 9498701 9498701 G A LAMP5 Missense_Mutation p.A164T 0.19 deleterious(0.01) probably_damaging(0.955) TCGA-EE-A183-06 21 34882224 34882224 G A GART Missense_Mutation p.S773F 0.14 tolerated(0.11) benign(0.033) TCGA-EE-A183-06 21 37591781 37591781 C A DOPEY2 Nonsense_Mutation p.S414* 0.14 TCGA-EE-A183-06 21 41452109 41452109 C T DSCAM Missense_Mutation p.E1464K 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A183-06 21 42613814 42613814 C T BACE2 Silent p.S229S 0.09 TCGA-EE-A183-06 21 43504231 43504231 G A UMODL1 Silent p.G119G 0.13 TCGA-EE-A183-06 21 43959705 43959705 G A SLC37A1 Missense_Mutation p.G145D 0.20 deleterious(0) probably_damaging(0.962) TCGA-EE-A183-06 21 45941994 45941994 G T TSPEAR Silent p.G446G 0.13 TCGA-EE-A183-06 21 47699992 47699992 G A MCM3AP Missense_Mutation p.P528S 0.17 tolerated(0.32) benign(0.024) TCGA-EE-A183-06 22 17688089 17688089 G A CECR1 Silent p.F138F 0.42 TCGA-EE-A183-06 22 20819739 20819739 G A KLHL22 Missense_Mutation p.T173I 0.39 deleterious(0.01) benign(0.085) TCGA-EE-A183-06 22 22323083 22323083 G A TOP3B Missense_Mutation p.P216S 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 22 22385615 22385615 G A IGLV4-69 Missense_Mutation p.G35E 0.28 deleterious(0.03) possibly_damaging(0.667) TCGA-EE-A183-06 22 25144949 25144949 C T PIWIL3 Silent p.L458L 0.32 TCGA-EE-A183-06 22 33327390 33327390 C T SYN3 Missense_Mutation p.G149E 0.29 deleterious(0.01) unknown(0) TCGA-EE-A183-06 22 37499285 37499285 G A TMPRSS6 Missense_Mutation p.S67L 0.50 tolerated(0.14) benign(0.001) TCGA-EE-A183-06 22 37962530 37962530 C T CDC42EP1 Silent p.F58F 0.36 TCGA-EE-A183-06 22 38823144 38823144 C T KCNJ4 Missense_Mutation p.D332N 0.38 tolerated(0.09) possibly_damaging(0.672) TCGA-EE-A183-06 22 38824022 38824022 G A KCNJ4 Missense_Mutation p.S39L 0.42 tolerated(0.12) possibly_damaging(0.711) TCGA-EE-A183-06 22 42537223 42537223 G A NDUFA6-AS1 3'Flank 0.33 TCGA-EE-A183-06 22 50192222 50192222 G A BRD1 Missense_Mutation p.P590L 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 22 51064619 51064619 C T ARSA Silent p.E314E 0.39 TCGA-EE-A183-06 2 10188285 10188285 C T KLF11 Missense_Mutation p.P274L 0.16 deleterious(0.04) possibly_damaging(0.847) TCGA-EE-A183-06 2 103006665 103006665 G A IL18R1 Missense_Mutation p.E367K 0.16 deleterious(0) probably_damaging(0.987) TCGA-EE-A183-06 2 10580951 10580951 C T ODC1 Missense_Mutation p.V429I 0.08 tolerated(0.15) benign(0.036) TCGA-EE-A183-06 2 107459497 107459497 C T ST6GAL2 Missense_Mutation p.E313K 0.23 probably_damaging(0.936) TCGA-EE-A183-06 2 108488584 108488584 A T RGPD4 Missense_Mutation p.K1375I 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 2 108496444 108496444 G A RGPD4 Missense_Mutation p.E1649K 0.14 deleterious_low_confidence(0.05) benign(0.009) TCGA-EE-A183-06 2 109384422 109384422 C T RANBP2 Missense_Mutation p.T2476I 0.18 deleterious(0) possibly_damaging(0.54) TCGA-EE-A183-06 2 109524406 109524406 G A EDAR Silent p.A291A 0.21 TCGA-EE-A183-06 2 113943574 113943574 G A PSD4 Missense_Mutation p.G457D 0.17 tolerated_low_confidence(0.07) benign(0.055) TCGA-EE-A183-06 2 120003228 120003228 C T STEAP3 Silent p.F62F 0.26 TCGA-EE-A183-06 2 120383201 120383201 C T PCDP1 Missense_Mutation p.R485C 0.23 deleterious(0) probably_damaging(0.944) TCGA-EE-A183-06 2 125521715 125521715 G A CNTNAP5 Missense_Mutation p.E841K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 2 130832321 130832321 G A POTEF Silent p.I908I 0.20 TCGA-EE-A183-06 2 135756509 135756509 C T MAP3K19 Missense_Mutation p.E125K 0.14 tolerated(0.26) possibly_damaging(0.637) TCGA-EE-A183-06 2 139308617 139308617 A T SPOPL Missense_Mutation p.K115N 0.11 tolerated(0.17) possibly_damaging(0.745) TCGA-EE-A183-06 2 141607863 141607863 C T LRP1B Missense_Mutation p.E1583K 0.29 benign(0.292) TCGA-EE-A183-06 2 152369315 152369315 T C NEB Missense_Mutation p.N7760D 0.20 possibly_damaging(0.848) TCGA-EE-A183-06 2 152373030 152373030 C T NEB Silent p.L7616L 0.24 TCGA-EE-A183-06 2 152404824 152404824 C T NEB Missense_Mutation p.E6719K 0.17 probably_damaging(0.991) TCGA-EE-A183-06 2 152506845 152506845 G A NEB Missense_Mutation p.P2426S 0.13 probably_damaging(0.949) TCGA-EE-A183-06 2 158397664 158397664 C T ACVR1C Missense_Mutation p.R388Q 0.13 tolerated(0.24) possibly_damaging(0.899) TCGA-EE-A183-06 2 158637084 158637084 G A ACVR1 Silent p.L32L 0.16 TCGA-EE-A183-06 2 166930023 166930023 G A SCN1A Missense_Mutation p.P37S 0.14 tolerated(0.34) benign(0.002) TCGA-EE-A183-06 2 167142981 167142981 G A SCN9A Silent p.S489S 0.19 TCGA-EE-A183-06 2 170591665 170591665 T G KLHL23 Missense_Mutation p.I47M 0.15 tolerated(0.1) possibly_damaging(0.546) TCGA-EE-A183-06 2 170591666 170591666 T C KLHL23 Missense_Mutation p.F48L 0.15 tolerated(0.23) benign(0.04) TCGA-EE-A183-06 2 179255912 179255912 T G OSBPL6 Missense_Mutation p.V830G 0.15 tolerated(0.45) benign(0.089) TCGA-EE-A183-06 2 179430280 179430280 C T TTN Missense_Mutation p.G26860E 0.14 TCGA-EE-A183-06 2 179558664 179558664 C T TTN Missense_Mutation p.E10500K 0.19 TCGA-EE-A183-06 2 179604105 179604105 C T TTN Missense_Mutation p.E4619K 0.12 TCGA-EE-A183-06 2 179647604 179647604 C T TTN Missense_Mutation p.S1010N 0.29 TCGA-EE-A183-06 2 185800571 185800571 G A ZNF804A Missense_Mutation p.E150K 0.10 deleterious(0.01) benign(0.057) TCGA-EE-A183-06 2 189599244 189599244 C T DIRC1 3'UTR 0.20 TCGA-EE-A183-06 2 197297889 197297889 C T HECW2 Missense_Mutation p.D87N 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A183-06 2 201469527 201469527 C T AOX1 Missense_Mutation p.P260S 0.20 deleterious(0.01) possibly_damaging(0.654) TCGA-EE-A183-06 2 207162009 207162009 A G ZDBF2 Missense_Mutation p.S34G 0.16 tolerated(0.06) benign(0.418) TCGA-EE-A183-06 2 207162010 207162010 G A ZDBF2 Missense_Mutation p.S34N 0.16 tolerated(0.69) possibly_damaging(0.517) TCGA-EE-A183-06 2 207174927 207174927 C T ZDBF2 Missense_Mutation p.A1892V 0.23 tolerated(1) possibly_damaging(0.483) TCGA-EE-A183-06 2 21229223 21229223 G A APOB Missense_Mutation p.S3506F 0.13 possibly_damaging(0.724) TCGA-EE-A183-06 2 220315923 220315923 C T SPEG Missense_Mutation p.P727S 0.21 possibly_damaging(0.888) TCGA-EE-A183-06 2 220396802 220396802 C T ASIC4 Silent p.F396F 0.17 TCGA-EE-A183-06 2 223559127 223559127 G A MOGAT1 Silent p.K175K 0.28 TCGA-EE-A183-06 2 238253407 238253407 G A COL6A3 Silent p.F2418F 0.16 TCGA-EE-A183-06 2 239092683 239092683 A G ILKAP Missense_Mutation p.F202L 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A183-06 2 241569699 241569699 C T GPR35 Silent p.I141I 0.26 TCGA-EE-A183-06 2 241622137 241622137 C T AQP12B Missense_Mutation p.E40K 0.25 deleterious(0) probably_damaging(0.968) TCGA-EE-A183-06 2 25016811 25016811 G A CENPO Missense_Mutation p.R8H 0.21 tolerated(0.54) benign(0.003) TCGA-EE-A183-06 2 27306388 27306388 T G EMILIN1 Missense_Mutation p.V650G 0.16 probably_damaging(0.988) TCGA-EE-A183-06 2 29072743 29072743 G A SPDYA Missense_Mutation p.G293E 0.15 tolerated_low_confidence(0.59) benign(0.001) TCGA-EE-A183-06 2 29296040 29296040 T C C2orf71 Missense_Mutation p.D363G 0.15 deleterious(0) probably_damaging(0.983) TCGA-EE-A183-06 2 30379532 30379532 C T YPEL5 Silent p.F5F 0.11 TCGA-EE-A183-06 2 33036214 33036214 G A TTC27 Missense_Mutation p.D708N 0.28 tolerated(0.3) benign(0.058) TCGA-EE-A183-06 2 39499519 39499519 G A MAP4K3 Silent p.S626S 0.23 TCGA-EE-A183-06 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.20 TCGA-EE-A183-06 2 48808326 48808326 C T STON1-GTF2A1L Missense_Mutation p.P185L 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A183-06 2 48936151 48936151 C T LHCGR Missense_Mutation p.E206K 0.17 tolerated(0.47) benign(0.044) TCGA-EE-A183-06 2 50724759 50724759 T C NRXN1 Missense_Mutation p.N904S 0.17 tolerated(0.36) benign(0.387) TCGA-EE-A183-06 2 60688272 60688272 C T BCL11A Missense_Mutation p.G592D 0.24 tolerated(0.3) possibly_damaging(0.475) TCGA-EE-A183-06 2 61275798 61275798 T G PEX13 Missense_Mutation p.S369A 0.20 tolerated(0.19) benign(0.002) TCGA-EE-A183-06 2 61345224 61345224 C T KIAA1841 Silent p.D667D 0.20 TCGA-EE-A183-06 2 69172399 69172399 C T GKN2 3'UTR 0.19 TCGA-EE-A183-06 2 70188299 70188299 G A ASPRV1 Silent p.V174V 0.25 TCGA-EE-A183-06 2 73678771 73678771 C T ALMS1 Missense_Mutation p.S1705L 0.20 benign(0.034) TCGA-EE-A183-06 2 74710166 74710166 C T CCDC142 5'Flank 0.21 TCGA-EE-A183-06 2 74902083 74902083 C T SEMA4F Missense_Mutation p.P357L 0.13 deleterious(0.04) possibly_damaging(0.474) TCGA-EE-A183-06 2 88890083 88890083 C T EIF2AK3 Missense_Mutation p.G348E 0.12 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A183-06 2 88890084 88890084 C T EIF2AK3 Missense_Mutation p.G348R 0.12 deleterious(0) benign(0.196) TCGA-EE-A183-06 2 90211769 90211769 C T IGKV3D-11 Silent p.L10L 0.12 TCGA-EE-A183-06 2 9630376 9630376 C T ADAM17 Missense_Mutation p.R802K 0.21 tolerated_low_confidence(0.08) benign(0.392) TCGA-EE-A183-06 2 96803328 96803328 G A ASTL Missense_Mutation p.P56L 0.11 tolerated(0.19) benign(0.02) TCGA-EE-A183-06 3 108475997 108475997 G A RETNLB Silent p.I12I 0.16 TCGA-EE-A183-06 3 108568021 108568021 G A TRAT1 Missense_Mutation p.D75N 0.14 deleterious(0.05) benign(0.191) TCGA-EE-A183-06 3 111312559 111312559 C T ZBED2 Missense_Mutation p.E164K 0.24 deleterious(0.01) benign(0.151) TCGA-EE-A183-06 3 113737574 113737574 A G KIAA1407 Silent p.L372L 0.15 TCGA-EE-A183-06 3 113955646 113955646 G A ZNF80 Silent p.F92F 0.22 TCGA-EE-A183-06 3 119451185 119451185 T C MAATS1 Silent p.L355L 0.19 TCGA-EE-A183-06 3 121304947 121304947 C T ARGFX Missense_Mutation p.P150S 0.16 tolerated(0.43) benign(0.017) TCGA-EE-A183-06 3 121972983 121972983 G A CASR 5'UTR 0.19 TCGA-EE-A183-06 3 121980683 121980683 C T CASR Silent p.I267I 0.24 TCGA-EE-A183-06 3 121980842 121980842 C T CASR Silent p.F320F 0.15 TCGA-EE-A183-06 3 124627012 124627012 C A MUC13 Missense_Mutation p.M506I 0.19 tolerated(0.51) benign(0.012) TCGA-EE-A183-06 3 12574394 12574394 C T TSEN2 3'UTR 0.24 TCGA-EE-A183-06 3 125831648 125831648 G A ALDH1L1 Missense_Mutation p.H730Y 0.10 tolerated(0.48) possibly_damaging(0.796) TCGA-EE-A183-06 3 127642866 127642866 G A KBTBD12 Missense_Mutation p.G321E 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A183-06 3 128890366 128890366 G A CNBP Missense_Mutation p.S47F 0.13 tolerated(0.1) benign(0.02) TCGA-EE-A183-06 3 129130042 129130042 C T EFCAB12 Missense_Mutation p.E332K 0.29 deleterious(0.01) benign(0.229) TCGA-EE-A183-06 3 133674003 133674003 C T SLCO2A1 Silent p.Q144Q 0.14 TCGA-EE-A183-06 3 13381526 13381526 G A NUP210 Missense_Mutation p.S1100F 0.14 deleterious(0) probably_damaging(0.99) TCGA-EE-A183-06 3 138170899 138170899 C T ESYT3 Missense_Mutation p.P113S 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 3 138189779 138189779 C A ESYT3 Missense_Mutation p.L551I 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 3 142089409 142089409 G A XRN1 Missense_Mutation p.T1041I 0.22 tolerated(0.17) benign(0.067) TCGA-EE-A183-06 3 146173214 146173214 C T PLSCR2 Missense_Mutation p.E118K 0.14 tolerated(0.07) possibly_damaging(0.775) TCGA-EE-A183-06 3 148601488 148601488 C T CPA3 Silent p.F289F 0.13 TCGA-EE-A183-06 3 150911370 150911370 G A MED12L Missense_Mutation p.E688K 0.14 tolerated(0.5) benign(0.061) TCGA-EE-A183-06 3 150916261 150916261 C T GPR171 Missense_Mutation p.E305K 0.16 tolerated(0.58) benign(0.003) TCGA-EE-A183-06 3 15507869 15507869 G A COLQ Missense_Mutation p.P265S 0.16 deleterious(0.03) unknown(0) TCGA-EE-A183-06 3 16242266 16242266 G A GALNT15 Missense_Mutation p.D283N 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 3 164772986 164772986 C T SI Nonsense_Mutation p.W503* 0.17 TCGA-EE-A183-06 3 164908584 164908584 C T SLITRK3 Missense_Mutation p.G12E 0.17 tolerated(0.46) benign(0.001) TCGA-EE-A183-06 3 167543099 167543099 C T SERPINI1 Silent p.F407F 0.18 TCGA-EE-A183-06 3 172232725 172232725 C T TNFSF10 Missense_Mutation p.D66N 0.18 tolerated(0.18) possibly_damaging(0.564) TCGA-EE-A183-06 3 172607321 172607321 T C SPATA16 3'UTR 0.20 TCGA-EE-A183-06 3 178543499 178543499 G A KCNMB2 Missense_Mutation p.M60I 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A183-06 3 195799012 195799012 T C TFRC Missense_Mutation p.E149G 0.23 tolerated(0.17) benign(0.002) TCGA-EE-A183-06 3 196737642 196737642 G A MFI2 Silent p.T419T 0.21 TCGA-EE-A183-06 3 21467107 21467107 G A ZNF385D Silent p.A243A 0.16 TCGA-EE-A183-06 3 33425589 33425589 A G FBXL2 Missense_Mutation p.I354V 0.17 tolerated(0.21) benign(0.007) TCGA-EE-A183-06 3 367692 367692 C T CHL1 Missense_Mutation p.P48S 0.21 tolerated(0.05) benign(0.044) TCGA-EE-A183-06 3 36893645 36893645 C T TRANK1 Missense_Mutation p.A1537T 0.23 deleterious(0) probably_damaging(0.937) TCGA-EE-A183-06 3 36899218 36899218 C T TRANK1 Silent p.G621G 0.15 TCGA-EE-A183-06 3 37778443 37778443 G A ITGA9 Missense_Mutation p.E735K 0.11 deleterious(0.02) benign(0.297) TCGA-EE-A183-06 3 38411643 38411643 C A XYLB Missense_Mutation p.P248Q 0.23 deleterious(0.05) probably_damaging(0.951) TCGA-EE-A183-06 3 38738878 38738878 C T SCN10A Missense_Mutation p.E1945K 0.17 tolerated_low_confidence(0.15) benign(0.004) TCGA-EE-A183-06 3 38739953 38739953 C T SCN10A Silent p.L1586L 0.15 TCGA-EE-A183-06 3 38888258 38888258 G A SCN11A Missense_Mutation p.S1768L 0.22 tolerated(0.08) benign(0.01) TCGA-EE-A183-06 3 38949533 38949533 G A SCN11A Silent p.L460L 0.11 TCGA-EE-A183-06 3 39226633 39226633 G A XIRP1 Missense_Mutation p.P1435L 0.12 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A183-06 3 40528402 40528402 C T ZNF619 Missense_Mutation p.P174L 0.20 tolerated(0.2) possibly_damaging(0.703) TCGA-EE-A183-06 3 40528403 40528403 C T ZNF619 Silent p.P174P 0.20 TCGA-EE-A183-06 3 42230613 42230613 C T TRAK1 Silent p.S229S 0.15 TCGA-EE-A183-06 3 46306846 46306846 G A CCR3 Missense_Mutation p.R87Q 0.31 tolerated(0.08) benign(0.038) TCGA-EE-A183-06 3 48668507 48668507 G A SLC26A6 Silent p.I351I 0.21 TCGA-EE-A183-06 3 49691254 49691254 G A BSN Missense_Mutation p.S1422N 0.22 unknown(0) TCGA-EE-A183-06 3 51264839 51264839 G A DOCK3 Silent p.R501R 0.12 TCGA-EE-A183-06 3 52816017 52816017 C T ITIH1 Missense_Mutation p.S250F 0.30 deleterious(0) possibly_damaging(0.897) TCGA-EE-A183-06 3 52836407 52836407 G A ITIH3 Missense_Mutation p.E481K 0.14 tolerated(0.17) benign(0.002) TCGA-EE-A183-06 3 89259296 89259296 C T EPHA3 Missense_Mutation p.A147V 0.14 deleterious(0) probably_damaging(0.994) TCGA-EE-A183-06 3 89521623 89521623 C T EPHA3 Silent p.N900N 0.14 TCGA-EE-A183-06 3 97983289 97983289 C T OR5H6 Missense_Mutation p.T54I 0.11 deleterious(0.01) possibly_damaging(0.45) TCGA-EE-A183-06 3 98217459 98217459 G A OR5K2 Missense_Mutation p.G312E 0.13 tolerated_low_confidence(0.76) benign(0) TCGA-EE-A183-06 3 99513167 99513167 G A COL8A1 Missense_Mutation p.G141E 0.14 deleterious(0.01) unknown(0) TCGA-EE-A183-06 4 100239275 100239275 G A ADH1B Missense_Mutation p.P63S 0.12 deleterious(0.04) benign(0.342) TCGA-EE-A183-06 4 109817828 109817828 C T COL25A1 Missense_Mutation p.E301K 0.12 tolerated(0.17) possibly_damaging(0.738) TCGA-EE-A183-06 4 111398146 111398146 C T ENPEP Silent p.F192F 0.18 TCGA-EE-A183-06 4 119745841 119745841 G A SEC24D Missense_Mutation p.P61L 0.09 tolerated_low_confidence(0.06) benign(0.127) TCGA-EE-A183-06 4 122085294 122085294 C T TNIP3 Missense_Mutation p.G73E 0.24 tolerated(0.52) benign(0.026) TCGA-EE-A183-06 4 123536858 123536858 C T IL21 Silent p.G113G 0.23 TCGA-EE-A183-06 4 123663309 123663309 C T BBS12 Missense_Mutation p.L88F 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 4 125593057 125593057 A G ANKRD50 Silent p.L459L 0.11 TCGA-EE-A183-06 4 126239578 126239578 C T FAT4 Missense_Mutation p.S671L 0.17 probably_damaging(0.997) TCGA-EE-A183-06 4 126398441 126398441 G A FAT4 Missense_Mutation p.R4142K 0.15 probably_damaging(0.991) TCGA-EE-A183-06 4 128807865 128807865 C T PLK4 Missense_Mutation p.P447L 0.14 tolerated(0.11) benign(0.03) TCGA-EE-A183-06 4 13604640 13604640 G A BOD1L1 Missense_Mutation p.S1295L 0.13 benign(0.023) TCGA-EE-A183-06 4 140811010 140811010 G A MAML3 Missense_Mutation p.P527L 0.12 probably_damaging(0.999) TCGA-EE-A183-06 4 146042490 146042490 G A ABCE1 Missense_Mutation p.V404I 0.17 tolerated(0.6) benign(0.012) TCGA-EE-A183-06 4 151504785 151504785 G A MAB21L2 Missense_Mutation p.E202K 0.17 deleterious(0.01) possibly_damaging(0.481) TCGA-EE-A183-06 4 151791753 151791753 A G LRBA Silent p.L791L 0.11 TCGA-EE-A183-06 4 152609888 152609888 G T PET112 Missense_Mutation p.Q409K 0.18 tolerated(0.14) possibly_damaging(0.588) TCGA-EE-A183-06 4 154702830 154702830 T C SFRP2 Missense_Mutation p.I221V 0.17 tolerated(0.44) probably_damaging(0.956) TCGA-EE-A183-06 4 156136139 156136139 C T NPY2R Missense_Mutation p.H350Y 0.14 tolerated(0.23) benign(0.002) TCGA-EE-A183-06 4 156638365 156638365 G A GUCY1A3 Missense_Mutation p.D543N 0.26 tolerated(0.39) benign(0.008) TCGA-EE-A183-06 4 158233926 158233926 G A GRIA2 Missense_Mutation p.D189N 0.17 tolerated(0.33) benign(0.05) TCGA-EE-A183-06 4 158257893 158257893 C T GRIA2 Missense_Mutation p.S613L 0.13 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A183-06 4 164271626 164271626 G A NPY5R Missense_Mutation p.M67I 0.20 tolerated(0.51) benign(0.001) TCGA-EE-A183-06 4 164393806 164393806 C T TKTL2 Missense_Mutation p.E361K 0.12 tolerated(0.06) benign(0.424) TCGA-EE-A183-06 4 166418673 166418673 G A CPE Missense_Mutation p.E448K 0.16 tolerated(0.86) unknown(0) TCGA-EE-A183-06 4 169812121 169812121 G A PALLD Silent p.E671E 0.11 TCGA-EE-A183-06 4 178897057 178897057 A T LINC01098 Missense_Mutation p.N87I 0.12 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-EE-A183-06 4 189060954 189060954 T A TRIML1 Missense_Mutation p.L81H 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 4 1902413 1902413 C T WHSC1 Missense_Mutation p.S11F 0.17 deleterious_low_confidence(0.04) benign(0.091) TCGA-EE-A183-06 4 1920195 1920195 G A WHSC1 Missense_Mutation p.G419R 0.17 tolerated(0.51) benign(0.017) TCGA-EE-A183-06 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.14 deleterious(0) possibly_damaging(0.756) TCGA-EE-A183-06 4 20568947 20568947 G A SLIT2 Missense_Mutation p.D930N 0.16 tolerated(1) benign(0.02) TCGA-EE-A183-06 4 25783942 25783942 C T SEL1L3 Missense_Mutation p.M793I 0.10 tolerated(0.32) possibly_damaging(0.714) TCGA-EE-A183-06 4 3123101 3123101 C T HTT Silent p.T405T 0.25 TCGA-EE-A183-06 4 3516526 3516526 C T LRPAP1 Missense_Mutation p.E322K 0.18 deleterious(0) probably_damaging(0.984) TCGA-EE-A183-06 4 39000431 39000431 G A TMEM156 Missense_Mutation p.P63S 0.18 tolerated(0.1) benign(0.038) TCGA-EE-A183-06 4 39910119 39910119 G A PDS5A Missense_Mutation p.R377C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 4 40123874 40123874 C T N4BP2 Silent p.P1381P 0.11 TCGA-EE-A183-06 4 47033990 47033990 G A GABRB1 Missense_Mutation p.G47E 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A183-06 4 47405408 47405408 C T GABRB1 Silent p.I206I 0.21 TCGA-EE-A183-06 4 47589102 47589102 G A ATP10D Missense_Mutation p.G1274R 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A183-06 4 48542951 48542951 C A FRYL Missense_Mutation p.G1905V 0.22 deleterious(0.04) probably_damaging(1) TCGA-EE-A183-06 4 70361605 70361605 C T UGT2B4 5'UTR 0.14 TCGA-EE-A183-06 4 71255473 71255473 C T SMR3B Missense_Mutation p.P50S 0.19 tolerated_low_confidence(0.37) unknown(0) TCGA-EE-A183-06 4 73956802 73956802 G A ANKRD17 Silent p.P2181P 0.16 TCGA-EE-A183-06 4 79373450 79373450 G A FRAS1 Silent p.L2235L 0.23 TCGA-EE-A183-06 4 87690977 87690977 T A PTPN13 Missense_Mutation p.F1520L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 4 87968715 87968715 C T AFF1 Missense_Mutation p.T343I 0.10 deleterious(0) probably_damaging(0.978) TCGA-EE-A183-06 4 88967960 88967960 C T PKD2 Missense_Mutation p.R496C 0.15 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A183-06 4 90169028 90169028 A C GPRIN3 Missense_Mutation p.L745R 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 4 91229510 91229510 A G CCSER1 Silent p.R25R 0.21 TCGA-EE-A183-06 5 101834543 101834543 G A SLCO6A1 Silent p.F2F 0.11 TCGA-EE-A183-06 5 110456205 110456205 C T WDR36 Missense_Mutation p.S695F 0.17 deleterious(0.02) possibly_damaging(0.862) TCGA-EE-A183-06 5 115151983 115151983 C T CDO1 Missense_Mutation p.E38K 0.17 tolerated(0.56) probably_damaging(0.966) TCGA-EE-A183-06 5 118969896 118969896 C T FAM170A Silent p.S151S 0.21 TCGA-EE-A183-06 5 118970319 118970319 G A FAM170A Silent p.E292E 0.11 TCGA-EE-A183-06 5 127622428 127622428 C T FBN2 Missense_Mutation p.D2332N 0.19 tolerated(0.17) benign(0.274) TCGA-EE-A183-06 5 132200017 132200017 G A GDF9 Missense_Mutation p.S70F 0.17 tolerated(0.12) possibly_damaging(0.588) TCGA-EE-A183-06 5 133914418 133914418 G A JADE2 Missense_Mutation p.R595Q 0.22 tolerated(0.35) benign(0.011) TCGA-EE-A183-06 5 13766189 13766189 T A DNAH5 Nonsense_Mutation p.K3333* 0.13 TCGA-EE-A183-06 5 13766289 13766289 C T DNAH5 Splice_Site p.X3300_splice 0.12 TCGA-EE-A183-06 5 13830721 13830721 C T DNAH5 Missense_Mutation p.G2016R 0.12 probably_damaging(0.988) TCGA-EE-A183-06 5 140186943 140186943 G T PCDHA4 Silent p.A57A 0.23 TCGA-EE-A183-06 5 140202640 140202640 G A PCDHA5 Missense_Mutation p.R427Q 0.20 tolerated_low_confidence(0.14) benign(0.225) TCGA-EE-A183-06 5 140208003 140208003 C T PCDHA6 Silent p.I109I 0.13 TCGA-EE-A183-06 5 140209115 140209115 G A PCDHA6 Missense_Mutation p.R480Q 0.20 tolerated_low_confidence(0.08) benign(0.104) TCGA-EE-A183-06 5 140209875 140209875 G A PCDHA6 Silent p.T733T 0.15 TCGA-EE-A183-06 5 140215568 140215568 C T PCDHA7 Nonsense_Mutation p.Q534* 0.19 TCGA-EE-A183-06 5 140227938 140227938 C T PCDHA9 5'UTR 0.26 TCGA-EE-A183-06 5 140228014 140228014 G A PCDHA9 5'UTR 0.15 TCGA-EE-A183-06 5 140249718 140249718 G A PCDHA11 Missense_Mutation p.D344N 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A183-06 5 140307121 140307121 G A PCDHAC1 Missense_Mutation p.G215E 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A183-06 5 140475257 140475257 C T PCDHB2 Nonsense_Mutation p.R295* 0.22 TCGA-EE-A183-06 5 140516594 140516594 C G PCDHB5 Missense_Mutation p.F526L 0.19 deleterious_low_confidence(0.02) benign(0.046) TCGA-EE-A183-06 5 140558106 140558106 G A PCDHB8 Missense_Mutation p.G164D 0.14 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EE-A183-06 5 140562564 140562564 G A PCDHB16 Missense_Mutation p.E144K 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A183-06 5 140580416 140580416 C T PCDHB11 Missense_Mutation p.P357S 0.11 deleterious_low_confidence(0.05) benign(0.34) TCGA-EE-A183-06 5 140626826 140626826 C T PCDHB15 Silent p.F560F 0.11 TCGA-EE-A183-06 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.14 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-EE-A183-06 5 140768692 140768692 C T PCDHGB4 Missense_Mutation p.P414L 0.12 deleterious(0.03) benign(0.139) TCGA-EE-A183-06 5 140801557 140801557 A T PCDHGA11 Missense_Mutation p.N255Y 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A183-06 5 140870576 140870576 C T PCDHGC5 Missense_Mutation p.T590I 0.10 deleterious(0) probably_damaging(0.971) TCGA-EE-A183-06 5 143853618 143853618 C T KCTD16 Missense_Mutation p.R410W 0.10 tolerated(0.18) possibly_damaging(0.893) TCGA-EE-A183-06 5 147024427 147024427 C T JAKMIP2 Missense_Mutation p.E357K 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-EE-A183-06 5 147695251 147695251 C T SPINK7 3'UTR 0.14 TCGA-EE-A183-06 5 148441898 148441898 G A SH3TC2 Intron 0.27 TCGA-EE-A183-06 5 149755020 149755020 C T TCOF1 Missense_Mutation p.A536V 0.15 tolerated(0.36) benign(0.008) TCGA-EE-A183-06 5 150646988 150646988 C T GM2A Silent p.I186I 0.15 TCGA-EE-A183-06 5 150924410 150924410 G A FAT2 Missense_Mutation p.S2093F 0.19 benign(0.366) TCGA-EE-A183-06 5 156533972 156533972 C T HAVCR2 Silent p.R20R 0.16 TCGA-EE-A183-06 5 156589444 156589444 G A FAM71B 3'UTR 0.16 TCGA-EE-A183-06 5 160721399 160721399 C T GABRB2 Missense_Mutation p.E410K 0.18 tolerated(0.12) benign(0.248) TCGA-EE-A183-06 5 160757949 160757949 T A GABRB2 Nonsense_Mutation p.K340* 0.12 TCGA-EE-A183-06 5 161116329 161116329 C T GABRA6 Silent p.L172L 0.10 TCGA-EE-A183-06 5 161324499 161324499 C T GABRA1 3'UTR 0.37 TCGA-EE-A183-06 5 161524814 161524814 C A GABRG2 Silent p.P166P 0.11 TCGA-EE-A183-06 5 163545 163545 G A PLEKHG4B Missense_Mutation p.E764K 0.27 deleterious(0) probably_damaging(0.971) TCGA-EE-A183-06 5 167517605 167517605 G A TENM2 Silent p.G514G 0.12 TCGA-EE-A183-06 5 167645536 167645536 C T TENM2 Missense_Mutation p.S1547L 0.17 deleterious(0.02) benign(0.133) TCGA-EE-A183-06 5 169535321 169535321 C T FOXI1 Silent p.F281F 0.20 TCGA-EE-A183-06 5 178310136 178310136 C T ZNF354B Missense_Mutation p.S228F 0.16 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A183-06 5 178408731 178408731 C T GRM6 Missense_Mutation p.R854Q 0.19 deleterious(0.01) benign(0.065) TCGA-EE-A183-06 5 179467603 179467603 G A RNF130 Missense_Mutation p.P98S 0.17 deleterious(0.02) possibly_damaging(0.75) TCGA-EE-A183-06 5 180051011 180051011 G A FLT4 Missense_Mutation p.A491V 0.13 tolerated(0.14) benign(0.003) TCGA-EE-A183-06 5 23526713 23526713 C T PRDM9 Missense_Mutation p.P506S 0.38 tolerated(0.31) benign(0.063) TCGA-EE-A183-06 5 24537561 24537561 C T CDH10 Missense_Mutation p.D152N 0.19 deleterious(0) probably_damaging(0.978) TCGA-EE-A183-06 5 24593423 24593423 A T CDH10 Missense_Mutation p.N59K 0.13 deleterious(0.02) possibly_damaging(0.898) TCGA-EE-A183-06 5 35037082 35037082 C T AGXT2 Missense_Mutation p.E151K 0.18 tolerated(0.11) benign(0.417) TCGA-EE-A183-06 5 35700732 35700732 C T SPEF2 Missense_Mutation p.S759F 0.16 tolerated(0.72) benign(0.051) TCGA-EE-A183-06 5 35910584 35910584 C T CAPSL Missense_Mutation p.G67R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 5 35957516 35957516 C A UGT3A1 Missense_Mutation p.L283F 0.12 tolerated(0.7) benign(0.107) TCGA-EE-A183-06 5 35988570 35988570 C T UGT3A1 Missense_Mutation p.G60R 0.27 deleterious(0.02) benign(0.016) TCGA-EE-A183-06 5 36049059 36049059 G A UGT3A2 Nonsense_Mutation p.R259* 0.12 TCGA-EE-A183-06 5 36052075 36052075 C T UGT3A2 Missense_Mutation p.E70K 0.13 tolerated(0.42) benign(0.013) TCGA-EE-A183-06 5 36257607 36257607 C T RANBP3L Missense_Mutation p.E266K 0.09 tolerated(0.13) possibly_damaging(0.703) TCGA-EE-A183-06 5 38427349 38427349 C T EGFLAM Silent p.V683V 0.11 TCGA-EE-A183-06 5 40947853 40947853 C T C7 Silent p.I296I 0.12 TCGA-EE-A183-06 5 41010127 41010127 C T MROH2B Missense_Mutation p.E1064K 0.16 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A183-06 5 41313696 41313696 C T PLCXD3 3'UTR 0.12 TCGA-EE-A183-06 5 54275133 54275133 G A ESM1 3'UTR 0.16 TCGA-EE-A183-06 5 55075797 55075797 C T DDX4 Nonsense_Mutation p.R134* 0.14 TCGA-EE-A183-06 5 68737430 68737430 A C MARVELD2 Missense_Mutation p.R542S 0.16 deleterious(0) possibly_damaging(0.61) TCGA-EE-A183-06 5 78347271 78347271 G A DMGDH Missense_Mutation p.P195L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 5 79027156 79027156 C T CMYA5 Silent p.F856F 0.23 TCGA-EE-A183-06 5 90052371 90052371 C T GPR98 Missense_Mutation p.P3894L 0.16 benign(0.026) TCGA-EE-A183-06 5 94288923 94288923 C T MCTP1 Silent p.K327K 0.36 TCGA-EE-A183-06 6 116966922 116966922 G A ZUFSP Silent p.Y548Y 0.27 TCGA-EE-A183-06 6 159185722 159185722 G C SYTL3 3'UTR 0.33 TCGA-EE-A183-06 6 161134046 161134046 G A PLG Missense_Mutation p.G146R 0.20 deleterious(0) possibly_damaging(0.823) TCGA-EE-A183-06 6 163483306 163483306 G A PACRG Missense_Mutation p.G139E 0.23 deleterious(0.04) probably_damaging(0.945) TCGA-EE-A183-06 6 163483307 163483307 G A PACRG Silent p.G139G 0.22 TCGA-EE-A183-06 6 165715346 165715346 C T C6orf118 Silent p.G155G 0.19 TCGA-EE-A183-06 6 169648776 169648776 G A THBS2 Silent p.I115I 0.27 TCGA-EE-A183-06 6 17665598 17665598 G A NUP153 Missense_Mutation p.P363S 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A183-06 6 25862519 25862519 A T SLC17A3 Missense_Mutation p.V82E 0.23 tolerated(1) benign(0.001) TCGA-EE-A183-06 6 26413477 26413477 G A BTN3A1 Missense_Mutation p.E367K 0.11 tolerated(0.16) benign(0.026) TCGA-EE-A183-06 6 2749435 2749435 C T MYLK4 Missense_Mutation p.E32K 0.20 deleterious_low_confidence(0) benign(0.101) TCGA-EE-A183-06 6 27834654 27834654 G C HIST1H1B Silent p.A218A 0.17 TCGA-EE-A183-06 6 29054815 29054815 G A OR2B3 Missense_Mutation p.L71F 0.13 deleterious(0) probably_damaging(0.938) TCGA-EE-A183-06 6 30647097 30647097 C T PPP1R18 Missense_Mutation p.E561K 0.19 deleterious(0.01) possibly_damaging(0.589) TCGA-EE-A183-06 6 31545336 31545336 C T TNF 3'UTR 0.31 TCGA-EE-A183-06 6 31844842 31844842 C T SLC44A4 Missense_Mutation p.D20N 0.12 deleterious(0.02) benign(0.253) TCGA-EE-A183-06 6 31902144 31902144 C T C2 Intron 0.17 TCGA-EE-A183-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.23 tolerated_low_confidence(0.07) benign(0.108) TCGA-EE-A183-06 6 32016248 32016248 G A TNXB 5'Flank 0.10 TCGA-EE-A183-06 6 32016249 32016249 G A TNXB 5'Flank 0.11 TCGA-EE-A183-06 6 32065690 32065690 G A TNXB Missense_Mutation p.L96F 0.11 benign(0.174) TCGA-EE-A183-06 6 32088853 32088853 G A ATF6B Missense_Mutation p.P205S 0.16 tolerated(0.14) possibly_damaging(0.685) TCGA-EE-A183-06 6 32903125 32903125 A C HLA-DMB Missense_Mutation p.S257A 0.16 tolerated(0.06) benign(0.001) TCGA-EE-A183-06 6 32903127 32903127 T A HLA-DMB Missense_Mutation p.Y256F 0.16 tolerated(0.11) benign(0.16) TCGA-EE-A183-06 6 33374649 33374649 C T KIFC1 Silent p.S658S 0.12 TCGA-EE-A183-06 6 34622480 34622480 C T C6orf106 Missense_Mutation p.E79K 0.12 tolerated(0.58) benign(0.004) TCGA-EE-A183-06 6 34831899 34831899 G A UHRF1BP1 Silent p.L1112L 0.14 TCGA-EE-A183-06 6 34831900 34831900 G A UHRF1BP1 Missense_Mutation p.D1113N 0.13 deleterious(0) probably_damaging(0.992) TCGA-EE-A183-06 6 35210459 35210459 G A SCUBE3 Missense_Mutation p.R532Q 0.13 tolerated(0.06) benign(0.048) TCGA-EE-A183-06 6 35715079 35715079 G A ARMC12 Nonsense_Mutation p.W189* 0.11 TCGA-EE-A183-06 6 36714178 36714178 G A CPNE5 Missense_Mutation p.P399S 0.24 tolerated(0.21) probably_damaging(0.993) TCGA-EE-A183-06 6 36716016 36716016 C T CPNE5 Missense_Mutation p.D334N 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A183-06 6 36931667 36931667 C T PI16 Missense_Mutation p.P447S 0.11 tolerated_low_confidence(0.12) benign(0.06) TCGA-EE-A183-06 6 37626132 37626132 C T MDGA1 Missense_Mutation p.E91K 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A183-06 6 38758067 38758067 G A DNAH8 Silent p.V672V 0.10 TCGA-EE-A183-06 6 39607510 39607510 G A KIF6 Missense_Mutation p.T92I 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 6 40400091 40400091 C T LRFN2 Silent p.R254R 0.11 TCGA-EE-A183-06 6 41165871 41165871 C T TREML2 Missense_Mutation p.G118S 0.17 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A183-06 6 43271893 43271893 C T SLC22A7 Silent p.I501I 0.12 TCGA-EE-A183-06 6 43412955 43412955 A G ABCC10 Missense_Mutation p.N978S 0.14 deleterious(0.01) benign(0.153) TCGA-EE-A183-06 6 44201328 44201328 C G SLC29A1 3'UTR 0.13 TCGA-EE-A183-06 6 44216385 44216385 C T HSP90AB1 Missense_Mutation p.H7Y 0.17 tolerated_low_confidence(0.17) benign(0.087) TCGA-EE-A183-06 6 44255350 44255350 C T TCTE1 Nonsense_Mutation p.W71* 0.19 TCGA-EE-A183-06 6 49754123 49754123 C T PGK2 Missense_Mutation p.E260K 0.11 tolerated(0.11) benign(0.014) TCGA-EE-A183-06 6 50696950 50696950 G A TFAP2D Missense_Mutation p.D270N 0.16 deleterious(0) possibly_damaging(0.854) TCGA-EE-A183-06 6 52052552 52052552 C T IL17A Missense_Mutation p.P60L 0.12 tolerated(0.22) unknown(0) TCGA-EE-A183-06 6 52329763 52329763 C T EFHC1 Silent p.F329F 0.11 TCGA-EE-A183-06 6 55216067 55216067 G A GFRAL Nonsense_Mutation p.W129* 0.11 TCGA-EE-A183-06 6 55739676 55739676 G A BMP5 5'UTR 0.19 TCGA-EE-A183-06 6 56324944 56324944 G A DST Nonsense_Mutation p.R5080* 0.12 TCGA-EE-A183-06 6 74171573 74171573 C T MTO1 5'UTR 0.34 TCGA-EE-A183-06 6 74229131 74229131 A G EEF1A1 Missense_Mutation p.Y85H 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.598) TCGA-EE-A183-06 6 74497077 74497077 T G CD109 Missense_Mutation p.F820V 0.12 tolerated(0.13) possibly_damaging(0.608) TCGA-EE-A183-06 6 7581253 7581253 C T DSP Silent p.I1610I 0.10 TCGA-EE-A183-06 6 7585740 7585740 G A DSP Missense_Mutation p.E2749K 0.15 probably_damaging(0.999) TCGA-EE-A183-06 6 76023073 76023073 C T FILIP1 Silent p.R825R 0.19 TCGA-EE-A183-06 6 76570771 76570771 G A MYO6 Missense_Mutation p.G502D 0.22 tolerated(0.08) unknown(0) TCGA-EE-A183-06 6 76640691 76640691 T G IMPG1 Missense_Mutation p.Q741P 0.11 tolerated(1) benign(0.006) TCGA-EE-A183-06 7 100086448 100086448 C T NYAP1 Silent p.G368G 0.39 TCGA-EE-A183-06 7 100684088 100684088 G A MUC17 Missense_Mutation p.D3131N 0.35 possibly_damaging(0.823) TCGA-EE-A183-06 7 100687042 100687042 G A MUC17 Silent p.T4115T 0.39 TCGA-EE-A183-06 7 103136310 103136310 G A RELN Missense_Mutation p.P3077S 0.08 deleterious(0.02) possibly_damaging(0.72) TCGA-EE-A183-06 7 103341446 103341446 A G RELN Silent p.G271G 0.43 TCGA-EE-A183-06 7 106513287 106513287 G A PIK3CG Missense_Mutation p.D731N 0.09 tolerated(0.22) benign(0.273) TCGA-EE-A183-06 7 107315535 107315535 G A SLC26A4 Missense_Mutation p.G249E 0.11 tolerated(0.06) probably_damaging(1) TCGA-EE-A183-06 7 107432331 107432331 G A SLC26A3 Missense_Mutation p.S109F 0.40 deleterious(0) possibly_damaging(0.633) TCGA-EE-A183-06 7 107703302 107703302 C T LAMB4 Missense_Mutation p.G1067R 0.30 deleterious(0.04) possibly_damaging(0.838) TCGA-EE-A183-06 7 119915147 119915147 C T KCND2 Missense_Mutation p.T154I 0.09 tolerated(0.19) benign(0) TCGA-EE-A183-06 7 121942979 121942980 - T FEZF1 Frame_Shift_Ins p.P315Tfs*5 0.14 TCGA-EE-A183-06 7 122194668 122194668 C T CADPS2 Missense_Mutation p.D471N 0.25 deleterious(0) possibly_damaging(0.728) TCGA-EE-A183-06 7 127976096 127976096 C T RBM28 Missense_Mutation p.G205D 0.47 tolerated(0.16) benign(0.024) TCGA-EE-A183-06 7 128846357 128846357 G A SMO Missense_Mutation p.R398Q 0.12 tolerated(0.3) benign(0.067) TCGA-EE-A183-06 7 130370138 130370138 C T TSGA13 5'UTR 0.40 TCGA-EE-A183-06 7 130417719 130417719 C T KLF14 3'UTR 0.45 TCGA-EE-A183-06 7 134250298 134250298 G A AKR1B15 Intron 0.50 TCGA-EE-A183-06 7 138566161 138566161 G A KIAA1549 Missense_Mutation p.P1401L 0.14 tolerated(0.05) probably_damaging(0.92) TCGA-EE-A183-06 7 139315928 139315928 G A HIPK2 Missense_Mutation p.P444S 0.19 tolerated(0.37) benign(0.326) TCGA-EE-A183-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EE-A183-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.39 deleterious(0) possibly_damaging(0.838) TCGA-EE-A183-06 7 141618714 141618714 C T OR9A4 Silent p.L13L 0.30 TCGA-EE-A183-06 7 141618858 141618858 C T OR9A4 Silent p.F61F 0.09 TCGA-EE-A183-06 7 141672853 141672853 A C TAS2R38 Missense_Mutation p.S213A 0.12 deleterious(0.02) possibly_damaging(0.835) TCGA-EE-A183-06 7 142168493 142168493 C T TRBV5-4 Missense_Mutation p.G77E 0.16 deleterious(0.04) possibly_damaging(0.781) TCGA-EE-A183-06 7 142232067 142232067 G A TRBV10-1 5'UTR 0.24 TCGA-EE-A183-06 7 142569537 142569537 C T TRPV6 Missense_Mutation p.G701R 0.12 tolerated(0.14) benign(0.197) TCGA-EE-A183-06 7 143027919 143027919 G A CLCN1 Nonsense_Mutation p.W303* 0.12 TCGA-EE-A183-06 7 143826480 143826480 C T OR2A14 Missense_Mutation p.S92F 0.13 deleterious(0.03) benign(0.213) TCGA-EE-A183-06 7 143955920 143955920 C T OR2A7 Missense_Mutation p.E268K 0.11 deleterious(0.04) possibly_damaging(0.731) TCGA-EE-A183-06 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.35 tolerated(0.68) benign(0.058) TCGA-EE-A183-06 7 149152510 149152510 G A ZNF777 Nonsense_Mutation p.Q202* 0.09 TCGA-EE-A183-06 7 149171709 149171709 G A ZNF746 Silent p.T568T 0.12 TCGA-EE-A183-06 7 150164382 150164382 C T GIMAP8 Missense_Mutation p.P199L 0.29 deleterious(0.04) benign(0.286) TCGA-EE-A183-06 7 150267085 150267085 G A GIMAP4 Intron 0.53 TCGA-EE-A183-06 7 150390337 150390337 G A GIMAP2 Missense_Mutation p.M321I 0.26 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A183-06 7 150558278 150558278 G A AOC1 Missense_Mutation p.G746E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 7 150647323 150647323 G A KCNH2 Silent p.T777T 0.11 TCGA-EE-A183-06 7 150831497 150831497 A G AGAP3 Missense_Mutation p.Q446R 0.10 deleterious(0.02) possibly_damaging(0.738) TCGA-EE-A183-06 7 151372708 151372708 G A PRKAG2 Missense_Mutation p.S161F 0.45 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-EE-A183-06 7 158704297 158704297 C T WDR60 Missense_Mutation p.S506F 0.12 deleterious(0) benign(0.004) TCGA-EE-A183-06 7 16131367 16131367 T A ISPD Missense_Mutation p.I437F 0.19 deleterious(0) possibly_damaging(0.646) TCGA-EE-A183-06 7 16505095 16505095 G A SOSTDC1 Missense_Mutation p.R67W 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A183-06 7 23826463 23826463 C T STK31 Missense_Mutation p.P803S 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A183-06 7 2634551 2634551 C T IQCE Nonsense_Mutation p.Q461* 0.15 TCGA-EE-A183-06 7 29152324 29152324 G A CPVL Missense_Mutation p.A95V 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A183-06 7 31124435 31124435 C T ADCYAP1R1 Silent p.I174I 0.20 TCGA-EE-A183-06 7 37780129 37780129 T A GPR141 Missense_Mutation p.M45K 0.15 tolerated(0.06) possibly_damaging(0.783) TCGA-EE-A183-06 7 38370461 38370461 G A TRGV8 5'UTR 0.20 TCGA-EE-A183-06 7 42004228 42004228 G A GLI3 Silent p.S1481S 0.24 TCGA-EE-A183-06 7 45798762 45798762 G A SEPT7P2 RNA 0.15 TCGA-EE-A183-06 7 82451790 82451790 G A PCLO Intron 0.30 TCGA-EE-A183-06 7 82579979 82579979 C T PCLO Missense_Mutation p.E3309K 0.28 unknown(0) TCGA-EE-A183-06 7 87785277 87785277 C T ADAM22 Silent p.I621I 0.39 TCGA-EE-A183-06 7 87856304 87856304 G A SRI 5'UTR 0.52 TCGA-EE-A183-06 7 88956682 88956682 G A ZNF804B Missense_Mutation p.E92K 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 7 92731442 92731442 G A SAMD9 Silent p.F1323F 0.10 TCGA-EE-A183-06 7 94033878 94033878 G A COL1A2 Missense_Mutation p.G97E 0.44 unknown(0) TCGA-EE-A183-06 7 97780697 97780697 G T LMTK2 Missense_Mutation p.G127V 0.17 tolerated(0.21) possibly_damaging(0.688) TCGA-EE-A183-06 7 97862900 97862900 G A TECPR1 Missense_Mutation p.S502L 0.28 tolerated(0.21) benign(0.001) TCGA-EE-A183-06 7 99445222 99445222 G A CYP3A43 Missense_Mutation p.E144K 0.33 deleterious(0.02) benign(0.025) TCGA-EE-A183-06 7 99691394 99691394 G A MCM7 Intron 0.22 TCGA-EE-A183-06 8 104330892 104330892 C T FZD6 Silent p.T84T 0.17 TCGA-EE-A183-06 8 106814062 106814062 C T ZFPM2 Silent p.F584F 0.13 TCGA-EE-A183-06 8 110457202 110457202 G A PKHD1L1 Missense_Mutation p.V1702I 0.19 tolerated(0.54) benign(0.026) TCGA-EE-A183-06 8 113529367 113529367 A C CSMD3 Missense_Mutation p.V1551G 0.14 deleterious(0.05) benign(0.099) TCGA-EE-A183-06 8 113933949 113933949 C T CSMD3 Missense_Mutation p.E514K 0.18 tolerated(0.07) benign(0.358) TCGA-EE-A183-06 8 117870611 117870611 A G RAD21 Missense_Mutation p.I154T 0.24 deleterious(0.04) benign(0.011) TCGA-EE-A183-06 8 131922098 131922098 C T ADCY8 Missense_Mutation p.R499K 0.15 tolerated(0.42) probably_damaging(0.91) TCGA-EE-A183-06 8 139672713 139672713 C T COL22A1 Missense_Mutation p.G1084E 0.16 unknown(0) TCGA-EE-A183-06 8 140631041 140631041 G A KCNK9 Silent p.I195I 0.19 TCGA-EE-A183-06 8 144406777 144406777 G A TOP1MT Missense_Mutation p.P232S 0.15 deleterious(0.04) probably_damaging(0.94) TCGA-EE-A183-06 8 24199170 24199170 G A ADAM28 Missense_Mutation p.G577E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A183-06 8 24254941 24254941 G A ADAMDEC1 Missense_Mutation p.R200Q 0.14 tolerated(0.15) probably_damaging(0.94) TCGA-EE-A183-06 8 2967741 2967741 C T CSMD1 Missense_Mutation p.G2183R 0.25 probably_damaging(1) TCGA-EE-A183-06 8 37704688 37704688 G A BRF2 Missense_Mutation p.R74W 0.17 deleterious(0) possibly_damaging(0.462) TCGA-EE-A183-06 8 39872789 39872789 G A IDO2 Missense_Mutation p.D311N 0.19 tolerated(0.2) benign(0.059) TCGA-EE-A183-06 8 53076592 53076592 G A ST18 Nonsense_Mutation p.Q452* 0.09 TCGA-EE-A183-06 8 61533353 61533353 C A RAB2A 3'UTR 0.12 TCGA-EE-A183-06 8 77767189 77767189 C T ZFHX4 Missense_Mutation p.P2678S 0.26 probably_damaging(0.994) TCGA-EE-A183-06 8 87660058 87660058 G A CNGB3 Missense_Mutation p.P321S 0.14 tolerated(0.26) benign(0.141) TCGA-EE-A183-06 9 101073422 101073422 C T GABBR2 Missense_Mutation p.M653I 0.16 deleterious(0.01) possibly_damaging(0.867) TCGA-EE-A183-06 9 101980325 101980325 G A ALG2 Missense_Mutation p.S381F 0.12 deleterious(0.04) possibly_damaging(0.593) TCGA-EE-A183-06 9 107298727 107298727 G A OR13C3 Missense_Mutation p.S123F 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A183-06 9 113173468 113173468 C T SVEP1 Missense_Mutation p.G2175R 0.14 probably_damaging(1) TCGA-EE-A183-06 9 113509934 113509934 C T MUSK Missense_Mutation p.S256F 0.15 deleterious(0) probably_damaging(0.934) TCGA-EE-A183-06 9 115421633 115421633 C T KIAA1958 Missense_Mutation p.H479Y 0.20 tolerated(0.07) benign(0.053) TCGA-EE-A183-06 9 120476546 120476546 C T TLR4 Missense_Mutation p.P714S 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A183-06 9 123753538 123753538 C T C5 Missense_Mutation p.E958K 0.15 deleterious(0.02) possibly_damaging(0.703) TCGA-EE-A183-06 9 125154609 125154609 C T PTGS1 Missense_Mutation p.S529F 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A183-06 9 125315853 125315853 G A OR1N2 Missense_Mutation p.M135I 0.16 deleterious(0) benign(0.035) TCGA-EE-A183-06 9 125377164 125377164 C T OR1Q1 Missense_Mutation p.L50F 0.18 tolerated(0.69) benign(0.039) TCGA-EE-A183-06 9 128728221 128728221 C T PBX3 3'UTR 0.15 TCGA-EE-A183-06 9 131021448 131021448 G A GOLGA2 Nonsense_Mutation p.Q672* 0.12 TCGA-EE-A183-06 9 131246222 131246222 A G ODF2 Silent p.Q331Q 0.15 TCGA-EE-A183-06 9 136201322 136201322 C T SURF6 Silent p.L70L 0.16 TCGA-EE-A183-06 9 137702115 137702115 G A COL5A1 Silent p.E1163E 0.17 TCGA-EE-A183-06 9 139889101 139889101 C T CLIC3 3'UTR 0.17 TCGA-EE-A183-06 9 140477021 140477021 G A ZMYND19 Nonsense_Mutation p.Q220* 0.18 TCGA-EE-A183-06 9 140477022 140477022 G A ZMYND19 Silent p.F219F 0.20 TCGA-EE-A183-06 9 23765032 23765032 G A ELAVL2 Intron 0.15 TCGA-EE-A183-06 9 27284922 27284922 C T EQTN Silent p.T228T 0.21 TCGA-EE-A183-06 9 325674 325674 C T DOCK8 Silent p.F277F 0.15 TCGA-EE-A183-06 9 32634889 32634889 G A TAF1L Missense_Mutation p.P230L 0.15 deleterious(0) benign(0.24) TCGA-EE-A183-06 9 33311157 33311157 G C NFX1 Missense_Mutation p.C477S 0.18 deleterious(0) probably_damaging(0.984) TCGA-EE-A183-06 9 33675964 33675964 G A PTENP1 RNA 0.21 TCGA-EE-A183-06 9 34623474 34623474 G A ARID3C Silent p.S271S 0.14 TCGA-EE-A183-06 9 35295814 35295814 C T UNC13B Silent p.F216F 0.15 TCGA-EE-A183-06 9 35560484 35560484 G A RUSC2 Missense_Mutation p.D1283N 0.21 deleterious(0) possibly_damaging(0.521) TCGA-EE-A183-06 9 35809185 35809185 G A NPR2 Missense_Mutation p.D1007N 0.22 tolerated(0.17) benign(0.008) TCGA-EE-A183-06 9 5787086 5787086 G A ERMP1 3'UTR 0.23 TCGA-EE-A183-06 9 6888029 6888029 C T KDM4C Missense_Mutation p.S250L 0.14 tolerated(0.1) possibly_damaging(0.539) TCGA-EE-A183-06 9 77257711 77257711 G A RORB Missense_Mutation p.G206E 0.14 tolerated(0.36) benign(0.002) TCGA-EE-A183-06 9 78794523 78794523 C T PCSK5 Missense_Mutation p.P638S 0.11 tolerated(0.08) benign(0.211) TCGA-EE-A183-06 9 78938169 78938169 G A PCSK5 Missense_Mutation p.G1408E 0.11 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A183-06 9 79441574 79441574 G A PRUNE2 Silent p.L195L 0.16 TCGA-EE-A183-06 9 99413953 99413953 G A AAED1 Silent p.Y101Y 0.09 TCGA-EE-A183-06 X 104464113 104464113 C T TEX13A Missense_Mutation p.E255K 0.21 tolerated(1) possibly_damaging(0.636) TCGA-EE-A183-06 X 105181565 105181565 A T NRK Missense_Mutation p.T1265S 0.33 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A183-06 X 10535628 10535628 G A MID1 5'UTR 0.27 TCGA-EE-A183-06 X 106171884 106171884 G A CLDN2 Silent p.G142G 0.39 TCGA-EE-A183-06 X 107814676 107814676 C T COL4A5 Missense_Mutation p.P140S 0.28 unknown(0) TCGA-EE-A183-06 X 11133033 11133033 C T HCCS Missense_Mutation p.A60V 0.28 tolerated(0.06) benign(0.081) TCGA-EE-A183-06 X 118222828 118222828 C T KIAA1210 Missense_Mutation p.E789K 0.44 tolerated(0.35) benign(0.12) TCGA-EE-A183-06 X 122551547 122551547 C T GRIA3 Missense_Mutation p.P599S 0.53 tolerated(0.44) probably_damaging(0.932) TCGA-EE-A183-06 X 12712497 12712497 G A FRMPD4 Missense_Mutation p.R286Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A183-06 X 140969271 140969271 C T MAGEC3 Nonsense_Mutation p.Q200* 0.35 TCGA-EE-A183-06 X 142718884 142718884 G A SLITRK4 Missense_Mutation p.S14F 0.33 tolerated(0.7) benign(0) TCGA-EE-A183-06 X 148798377 148798377 C T MAGEA11 Missense_Mutation p.P411S 0.42 deleterious(0.01) possibly_damaging(0.829) TCGA-EE-A183-06 X 150839561 150839561 G A PASD1 Missense_Mutation p.E375K 0.24 tolerated(0.13) possibly_damaging(0.766) TCGA-EE-A183-06 X 150842617 150842617 G A PASD1 Missense_Mutation p.D712N 0.23 tolerated(0.98) benign(0.001) TCGA-EE-A183-06 X 151092175 151092175 G A MAGEA4 Silent p.E13E 0.30 TCGA-EE-A183-06 X 151138795 151138795 C T GABRE Missense_Mutation p.E46K 0.24 tolerated(0.8) benign(0) TCGA-EE-A183-06 X 151336803 151336803 G A GABRA3 Missense_Mutation p.S459F 0.29 deleterious(0) probably_damaging(0.985) TCGA-EE-A183-06 X 152482212 152482212 C T MAGEA1 Missense_Mutation p.G267S 0.30 deleterious(0.02) probably_damaging(1) TCGA-EE-A183-06 X 18942596 18942596 G A PHKA2 Silent p.I539I 0.28 TCGA-EE-A183-06 X 19389505 19389505 G A MAP3K15 Silent p.S1084S 0.16 TCGA-EE-A183-06 X 29973470 29973470 C T IL1RAPL1 Missense_Mutation p.P542S 0.16 deleterious(0.03) benign(0.117) TCGA-EE-A183-06 X 3238618 3238618 C T MXRA5 Missense_Mutation p.G1703E 0.34 deleterious(0) possibly_damaging(0.894) TCGA-EE-A183-06 X 34961618 34961618 C T FAM47B Missense_Mutation p.R224C 0.29 tolerated(0.21) benign(0.002) TCGA-EE-A183-06 X 37027432 37027432 C T FAM47C Missense_Mutation p.H317Y 0.21 tolerated(0.21) possibly_damaging(0.888) TCGA-EE-A183-06 X 43542827 43542827 G A MAOA Missense_Mutation p.R47K 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A183-06 X 47074395 47074395 C T UBA1 3'UTR 0.30 TCGA-EE-A183-06 X 49089751 49089751 C T CACNA1F Silent p.G7G 0.23 TCGA-EE-A183-06 X 51150672 51150672 C T CXorf67 Silent p.R268R 0.44 TCGA-EE-A183-06 X 68060501 68060501 C T EFNB1 3'UTR 0.33 TCGA-EE-A183-06 X 71493113 71493113 G A RPS4X Missense_Mutation p.T220I 0.28 deleterious(0.04) possibly_damaging(0.872) TCGA-EE-A183-06 X 78010720 78010720 C T LPAR4 Silent p.F118F 0.34 TCGA-EE-A183-06 X 84561284 84561284 G A POF1B Missense_Mutation p.S407F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A183-06 Y 4925192 4925192 G A PCDH11Y Missense_Mutation p.E110K 0.32 deleterious(0.01) benign(0.287) TCGA-EE-A184-06 10 104176550 104176550 G T PSD Silent p.P82P 0.43 TCGA-EE-A184-06 10 11505651 11505651 C T USP6NL Missense_Mutation p.E443K 0.08 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A184-06 10 123278254 123278254 G T FGFR2 Silent p.S343S 0.41 TCGA-EE-A184-06 10 123325091 123325091 C A FGFR2 Missense_Mutation p.L79F 0.32 tolerated(0.07) possibly_damaging(0.864) TCGA-EE-A184-06 10 133106588 133106588 G T TCERG1L Missense_Mutation p.H186N 0.25 deleterious_low_confidence(0.01) benign(0.201) TCGA-EE-A184-06 10 26508003 26508003 C A GAD2 Silent p.P106P 0.42 TCGA-EE-A184-06 10 61834852 61834852 G T ANK3 Missense_Mutation p.F1929L 0.33 possibly_damaging(0.899) TCGA-EE-A184-06 10 73511607 73511607 C T C10orf54 Missense_Mutation p.G239E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 10 73559348 73559348 G T CDH23 Nonsense_Mutation p.G202* 0.11 TCGA-EE-A184-06 10 85982090 85982090 G T LRIT2 Silent p.P413P 0.48 TCGA-EE-A184-06 10 86012746 86012746 G A RGR Silent p.L168L 0.47 TCGA-EE-A184-06 10 98092351 98092351 C A DNTT Silent p.R453R 0.30 TCGA-EE-A184-06 11 108594135 108594135 G T DDX10 Missense_Mutation p.K637N 0.43 tolerated(0.14) benign(0.075) TCGA-EE-A184-06 11 116661594 116661594 C A APOA5 Silent p.L117L 0.38 TCGA-EE-A184-06 11 118014600 118014600 C A SCN4B Missense_Mutation p.K137N 0.42 tolerated(0.05) probably_damaging(0.958) TCGA-EE-A184-06 11 126142894 126142894 G T FOXRED1 Missense_Mutation p.G113C 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 11 128651878 128651878 C A FLI1 Silent p.T205T 0.34 TCGA-EE-A184-06 11 128709265 128709265 G T KCNJ1 Silent p.R311R 0.26 TCGA-EE-A184-06 11 134239754 134239754 T C GLB1L2 Silent p.L361L 0.27 TCGA-EE-A184-06 11 1643370 1643370 G T KRTAP5-4 5'Flank 0.33 TCGA-EE-A184-06 11 17419937 17419937 G A ABCC8 Silent p.N1234N 0.37 TCGA-EE-A184-06 11 46391559 46391559 G T DGKZ Missense_Mutation p.K378N 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 11 4967462 4967462 G T OR51A4 Missense_Mutation p.P290Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 11 5067867 5067867 C A OR52J3 Missense_Mutation p.L38I 0.21 tolerated(0.23) benign(0.012) TCGA-EE-A184-06 11 5364502 5364502 G A OR51B5 Silent p.L85L 0.60 TCGA-EE-A184-06 11 55340324 55340324 C A OR4C16 Missense_Mutation p.H241N 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A184-06 11 56344874 56344874 C A OR5M10 Silent p.V108V 0.35 TCGA-EE-A184-06 11 57427470 57427470 C A CLP1 Silent p.V174V 0.46 TCGA-EE-A184-06 11 5862851 5862851 C T OR52E6 Missense_Mutation p.E93K 0.45 tolerated(0.06) benign(0.075) TCGA-EE-A184-06 11 6292680 6292680 C A CCKBR Silent p.P417P 0.14 TCGA-EE-A184-06 11 65651423 65651423 G T FIBP 3'UTR 0.16 TCGA-EE-A184-06 11 66189596 66189596 C T NPAS4 Missense_Mutation p.P61S 0.36 tolerated(0.77) benign(0.003) TCGA-EE-A184-06 11 7065065 7065065 C A NLRP14 Missense_Mutation p.P603Q 0.29 tolerated(1) benign(0.001) TCGA-EE-A184-06 11 72794770 72794770 C G FCHSD2 Missense_Mutation p.K45N 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A184-06 11 73101837 73101837 C A RELT Missense_Mutation p.P53Q 0.49 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A184-06 11 78369483 78369483 C A TENM4 Missense_Mutation p.G2644W 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A184-06 11 828772 828772 G T EFCAB4A Missense_Mutation p.Q55H 0.32 deleterious(0) possibly_damaging(0.837) TCGA-EE-A184-06 11 85436235 85436235 C A SYTL2 Missense_Mutation p.R422M 0.51 deleterious(0.04) possibly_damaging(0.614) TCGA-EE-A184-06 12 10587105 10587105 G T KLRC2 Missense_Mutation p.P104Q 0.26 tolerated(0.51) benign(0.008) TCGA-EE-A184-06 12 110449912 110449912 G A ANKRD13A Missense_Mutation p.V67M 0.47 deleterious(0) possibly_damaging(0.566) TCGA-EE-A184-06 12 113405891 113405891 C T OAS3 Missense_Mutation p.R1006C 0.40 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A184-06 12 117696876 117696876 C A NOS1 Silent p.V809V 0.32 TCGA-EE-A184-06 12 12022795 12022795 G T ETV6 Missense_Mutation p.G301W 0.41 deleterious(0.02) possibly_damaging(0.566) TCGA-EE-A184-06 12 123285855 123285855 G T CCDC62 Missense_Mutation p.G388W 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 12 130831091 130831091 G T PIWIL1 Nonsense_Mutation p.G165* 0.42 TCGA-EE-A184-06 12 15784514 15784514 G T EPS8 Missense_Mutation p.P636T 0.27 tolerated(0.4) probably_damaging(0.999) TCGA-EE-A184-06 12 25302633 25302633 G A CASC1 Nonsense_Mutation p.Q172* 0.38 TCGA-EE-A184-06 12 27863869 27863869 G T MRPS35 Silent p.P31P 0.42 TCGA-EE-A184-06 12 2797804 2797804 C T CACNA1C Silent p.C2040C 0.32 TCGA-EE-A184-06 12 3029954 3029954 G T TULP3 Missense_Mutation p.R40M 0.41 deleterious(0) probably_damaging(0.992) TCGA-EE-A184-06 12 49061513 49061513 G T KANSL2 Silent p.S312S 0.41 TCGA-EE-A184-06 12 49890753 49890753 G T SPATS2 Missense_Mutation p.G222W 0.33 deleterious(0.04) possibly_damaging(0.9) TCGA-EE-A184-06 12 52448610 52448610 T G NR4A1 Silent p.T179T 0.49 TCGA-EE-A184-06 12 52710738 52710738 G T KRT83 Missense_Mutation p.L274M 0.36 deleterious(0) probably_damaging(0.993) TCGA-EE-A184-06 12 52756730 52756730 C A KRT85 Missense_Mutation p.G329W 0.45 deleterious(0) probably_damaging(0.975) TCGA-EE-A184-06 12 52827670 52827670 G T KRT75 Missense_Mutation p.P140H 0.35 deleterious(0) possibly_damaging(0.637) TCGA-EE-A184-06 12 52845496 52845496 C A KRT6B Missense_Mutation p.G123W 0.19 deleterious(0.01) unknown(0) TCGA-EE-A184-06 12 52883769 52883769 C A KRT6A Missense_Mutation p.M387I 0.16 deleterious(0.04) benign(0.085) TCGA-EE-A184-06 12 53839807 53839807 C A PRR13 Silent p.S137S 0.45 TCGA-EE-A184-06 12 54974740 54974740 C A PPP1R1A Missense_Mutation p.K166N 0.42 deleterious_low_confidence(0.02) benign(0.001) TCGA-EE-A184-06 12 56094079 56094079 G T ITGA7 Missense_Mutation p.R257S 0.44 tolerated(1) benign(0.01) TCGA-EE-A184-06 12 57566963 57566963 C A LRP1 Missense_Mutation p.P1059H 0.39 possibly_damaging(0.827) TCGA-EE-A184-06 12 91449766 91449766 C T KERA Missense_Mutation p.R98K 0.39 tolerated(0.59) benign(0.029) TCGA-EE-A184-06 13 21549192 21549192 G T LATS2 Silent p.P1028P 0.39 TCGA-EE-A184-06 13 27332942 27332942 C A GPR12 3'UTR 0.27 TCGA-EE-A184-06 13 38211448 38211448 G A TRPC4 Silent p.I847I 0.14 TCGA-EE-A184-06 13 38924142 38924142 G T UFM1 Missense_Mutation p.K3N 0.13 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-EE-A184-06 13 39266448 39266448 C A FREM2 Missense_Mutation p.P1656H 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A184-06 13 39587682 39587682 C T PROSER1 Silent p.T569T 0.08 TCGA-EE-A184-06 13 53217458 53217458 G T HNRNPA1L2 Missense_Mutation p.K277N 0.68 deleterious(0.01) unknown(0) TCGA-EE-A184-06 13 72440969 72440969 G T DACH1 5'UTR 0.16 TCGA-EE-A184-06 14 103807359 103807359 G T EIF5 Missense_Mutation p.K422N 0.37 tolerated(0.26) benign(0.354) TCGA-EE-A184-06 14 104559928 104559928 C A ASPG Missense_Mutation p.Q98K 0.27 tolerated(0.73) benign(0.038) TCGA-EE-A184-06 14 106066360 106066360 C A IGHE 3'UTR 0.34 TCGA-EE-A184-06 14 106667806 106667806 T G IGHV3-20 Silent p.A42A 0.27 TCGA-EE-A184-06 14 20248596 20248596 C A OR4M1 Missense_Mutation p.L39I 0.38 tolerated(0.3) benign(0.063) TCGA-EE-A184-06 14 24568320 24568320 C A PCK2 Missense_Mutation p.Q243K 0.19 tolerated(0.24) benign(0.001) TCGA-EE-A184-06 14 55518520 55518520 G T MAPK1IP1L Intron 0.39 TCGA-EE-A184-06 14 70634712 70634712 G A SLC8A3 Missense_Mutation p.S143F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 14 89628893 89628893 G T FOXN3 Silent p.P446P 0.37 TCGA-EE-A184-06 15 22864188 22864188 T C TUBGCP5 Silent p.L716L 0.41 TCGA-EE-A184-06 15 23889108 23889108 G A MAGEL2 3'UTR 0.62 TCGA-EE-A184-06 15 28538062 28538062 C A HERC2 Silent p.L98L 0.35 TCGA-EE-A184-06 15 34078059 34078059 C A RYR3 Silent p.P3155P 0.36 TCGA-EE-A184-06 15 38243444 38243444 G A TMCO5A 3'UTR 0.40 TCGA-EE-A184-06 15 42162652 42162652 G T SPTBN5 Missense_Mutation p.Q1852K 0.11 possibly_damaging(0.828) TCGA-EE-A184-06 15 42362987 42362987 G T PLA2G4D Silent p.P657P 0.50 TCGA-EE-A184-06 15 45050916 45050916 G T TRIM69 Missense_Mutation p.R226L 0.35 tolerated(0.06) benign(0.015) TCGA-EE-A184-06 15 65208100 65208100 G A ANKDD1A Splice_Site p.X46_splice 0.34 TCGA-EE-A184-06 15 65693168 65693168 G T IGDCC4 Missense_Mutation p.P273T 0.34 deleterious(0.02) probably_damaging(1) TCGA-EE-A184-06 15 69339775 69339775 G T NOX5 Missense_Mutation p.G572V 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 15 74327753 74327753 G A PML Intron 0.41 TCGA-EE-A184-06 15 75981198 75981198 C A CSPG4 Silent p.V736V 0.37 TCGA-EE-A184-06 15 76668513 76668513 G T SCAPER Missense_Mutation p.P1282Q 0.25 tolerated(0.13) probably_damaging(0.937) TCGA-EE-A184-06 15 84694036 84694036 G A ADAMTSL3 Missense_Mutation p.G1502R 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A184-06 16 14970250 14970250 G T NOMO1 Silent p.G797G 0.39 TCGA-EE-A184-06 16 15841937 15841937 G T MYH11 Missense_Mutation p.P723H 0.26 probably_damaging(1) TCGA-EE-A184-06 16 1877845 1877845 C A FAHD1 Silent p.I205I 0.35 TCGA-EE-A184-06 16 19020565 19020565 C A TMC7 Silent p.R47R 0.46 TCGA-EE-A184-06 16 20781506 20781506 C A ACSM3 Missense_Mutation p.F50L 0.54 tolerated(0.19) benign(0.164) TCGA-EE-A184-06 16 2868943 2868943 G T PRSS21 Missense_Mutation p.G175C 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 16 30196587 30196587 C A CORO1A Silent p.A19A 0.20 TCGA-EE-A184-06 16 31373991 31373991 C A ITGAX Missense_Mutation p.R426S 0.54 deleterious(0.02) probably_damaging(1) TCGA-EE-A184-06 16 3614431 3614431 C A NLRC3 Missense_Mutation p.K216N 0.43 deleterious(0.02) benign(0.222) TCGA-EE-A184-06 16 3778993 3778993 C A CREBBP Missense_Mutation p.G2019W 0.55 unknown(0) TCGA-EE-A184-06 16 46990915 46990915 C A DNAJA2 3'UTR 0.41 TCGA-EE-A184-06 16 69875994 69875994 C A WWP2 Silent p.P182P 0.45 TCGA-EE-A184-06 16 74382776 74382776 C A RP11-252A24.2 RNA 0.53 TCGA-EE-A184-06 16 75268985 75268985 G T BCAR1 Silent p.L650L 0.38 TCGA-EE-A184-06 16 773117 773117 C A CCDC78 Missense_Mutation p.R393L 0.14 deleterious(0.01) possibly_damaging(0.668) TCGA-EE-A184-06 16 77397761 77397761 C A ADAMTS18 Missense_Mutation p.G332W 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 16 77896747 77896747 C A VAT1L Missense_Mutation p.L228I 0.25 tolerated(0.33) benign(0.2) TCGA-EE-A184-06 16 90161731 90161731 G T TUBB8P7 RNA 0.25 TCGA-EE-A184-06 16 9858428 9858428 G A GRIN2A Silent p.S991S 0.19 TCGA-EE-A184-06 17 11593391 11593391 G A DNAH9 Missense_Mutation p.D1418N 0.60 possibly_damaging(0.517) TCGA-EE-A184-06 17 27027482 27027482 C A SUPT6H Silent p.S1586S 0.31 TCGA-EE-A184-06 17 27442428 27442428 C A MYO18A Missense_Mutation p.E753D 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A184-06 17 36709048 36709048 G T SRCIN1 Missense_Mutation p.H749N 0.14 tolerated(0.38) benign(0.17) TCGA-EE-A184-06 17 39254032 39254032 G T KRTAP4-8 Missense_Mutation p.P102H 0.24 deleterious(0) unknown(0) TCGA-EE-A184-06 17 3947527 3947527 C A ZZEF1 Nonsense_Mutation p.G2053* 0.75 TCGA-EE-A184-06 17 39912104 39912104 G A JUP Silent p.P710P 0.21 TCGA-EE-A184-06 17 39919252 39919252 G T JUP Missense_Mutation p.Q494K 0.21 tolerated(0.27) benign(0.031) TCGA-EE-A184-06 17 44111638 44111638 C A KANSL1 Missense_Mutation p.R852M 0.15 deleterious(0) probably_damaging(0.987) TCGA-EE-A184-06 17 46673903 46673903 G T HOXB6 Missense_Mutation p.L183M 0.28 deleterious(0) probably_damaging(0.987) TCGA-EE-A184-06 17 49708945 49708945 C A CA10 Nonstop_Mutation p.*329Yext*11 0.58 TCGA-EE-A184-06 17 61958123 61958123 C A GH2 Silent p.V155V 0.27 TCGA-EE-A184-06 17 62291306 62291306 G A TEX2 Missense_Mutation p.S91L 0.58 tolerated_low_confidence(0.27) benign(0.003) TCGA-EE-A184-06 17 62817966 62817966 G T RNU7-115P 3'Flank 0.21 TCGA-EE-A184-06 17 66538276 66538276 G T FAM20A Missense_Mutation p.P320Q 0.14 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A184-06 17 73745075 73745075 G T ITGB4 Missense_Mutation p.G1089W 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 17 76535915 76535915 C T DNAH17 Silent p.K860K 0.31 TCGA-EE-A184-06 17 7722560 7722560 C A DNAH2 Missense_Mutation p.L3617M 0.76 probably_damaging(0.999) TCGA-EE-A184-06 17 7809519 7809519 T C CHD3 Intron 0.56 TCGA-EE-A184-06 17 7809520 7809520 C T CHD3 Intron 0.56 TCGA-EE-A184-06 17 78321960 78321960 G T RNF213 Silent p.L3275L 0.25 TCGA-EE-A184-06 17 80361888 80361888 G T OGFOD3 Silent p.P208P 0.38 TCGA-EE-A184-06 17 8408088 8408088 A C MYH10 Missense_Mutation p.L1175V 0.49 probably_damaging(0.995) TCGA-EE-A184-06 18 12325368 12325368 G T TUBB6 Nonsense_Mutation p.E194* 0.30 TCGA-EE-A184-06 18 24496499 24496499 C A CHST9 Missense_Mutation p.K352N 0.38 tolerated(0.11) possibly_damaging(0.854) TCGA-EE-A184-06 18 2577813 2577813 C A NDC80 Missense_Mutation p.P83Q 0.50 deleterious(0) probably_damaging(0.918) TCGA-EE-A184-06 18 28923508 28923508 C T DSG1 Missense_Mutation p.H595Y 0.37 deleterious(0) possibly_damaging(0.826) TCGA-EE-A184-06 18 61011643 61011643 C A KDSR Missense_Mutation p.K231N 0.51 deleterious(0) probably_damaging(0.98) TCGA-EE-A184-06 19 1084305 1084305 G T HMHA1 Silent p.V1024V 0.34 TCGA-EE-A184-06 19 11545864 11545864 G T CCDC151 5'UTR 0.37 TCGA-EE-A184-06 19 15276723 15276723 G T NOTCH3 Missense_Mutation p.R1848S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 19 15784502 15784502 C A CYP4F12 Missense_Mutation p.P55T 0.16 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A184-06 19 16899890 16899890 G T NWD1 Missense_Mutation p.Q943H 0.48 deleterious(0.01) benign(0.097) TCGA-EE-A184-06 19 17373625 17373625 C T USHBP1 Silent p.L126L 0.43 TCGA-EE-A184-06 19 17463169 17463169 C A PLVAP 3'UTR 0.21 TCGA-EE-A184-06 19 17838339 17838339 G T MAP1S Missense_Mutation p.G716W 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 19 18376007 18376007 G T KIAA1683 Silent p.S781S 0.34 TCGA-EE-A184-06 19 18885745 18885745 G A CRTC1 Silent p.A503A 0.18 TCGA-EE-A184-06 19 19106039 19106039 C A SUGP2 Silent p.L1014L 0.19 TCGA-EE-A184-06 19 22847622 22847622 A C ZNF492 Missense_Mutation p.K384T 0.36 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A184-06 19 33703778 33703778 C T SLC7A10 Missense_Mutation p.V163M 0.30 tolerated(0.11) benign(0.016) TCGA-EE-A184-06 19 40098033 40098033 G T LGALS13 3'UTR 0.53 TCGA-EE-A184-06 19 40329698 40329698 G T FBL Missense_Mutation p.H176N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 19 40412158 40412158 G T FCGBP Missense_Mutation p.P1157Q 0.33 probably_damaging(0.995) TCGA-EE-A184-06 19 40420122 40420122 C A FCGBP Missense_Mutation p.G958W 0.31 probably_damaging(1) TCGA-EE-A184-06 19 41066343 41066343 C A SPTBN4 Intron 0.53 TCGA-EE-A184-06 19 41269491 41269491 G A SNRPA Splice_Site p.X201_splice 0.15 TCGA-EE-A184-06 19 45183602 45183602 T G CEACAM19 Missense_Mutation p.D234E 0.35 tolerated(0.68) benign(0.004) TCGA-EE-A184-06 19 46330795 46330797 GAG - SYMPK In_Frame_Del p.L718del 0.26 TCGA-EE-A184-06 19 46376171 46376171 C A FOXA3 Missense_Mutation p.P303H 0.36 deleterious(0) probably_damaging(0.988) TCGA-EE-A184-06 19 46388613 46388613 C A IRF2BP1 Silent p.L140L 0.42 TCGA-EE-A184-06 19 4839210 4839210 C A PLIN3 Missense_Mutation p.K433N 0.40 deleterious(0.05) benign(0.072) TCGA-EE-A184-06 19 49167500 49167500 G T NTN5 Silent p.T290T 0.27 TCGA-EE-A184-06 19 49843549 49843549 G T CD37 Silent p.L270L 0.37 TCGA-EE-A184-06 19 50333347 50333347 G T MED25 Missense_Mutation p.G231W 0.33 deleterious(0) possibly_damaging(0.887) TCGA-EE-A184-06 19 52381728 52381728 C A ZNF577 Missense_Mutation p.R34M 0.17 deleterious(0.01) possibly_damaging(0.601) TCGA-EE-A184-06 19 52618410 52618410 G T ZNF616 Silent p.T669T 0.37 TCGA-EE-A184-06 19 54212017 54212017 G A MIR518C RNA 0.08 TCGA-EE-A184-06 19 54872569 54872569 G T LAIR1 Silent p.P106P 0.40 TCGA-EE-A184-06 19 55086037 55086037 C A LILRA2 Missense_Mutation p.L114M 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 19 55098720 55098720 G T LILRA2 Missense_Mutation p.M453I 0.37 deleterious(0.04) benign(0.003) TCGA-EE-A184-06 19 55494486 55494486 G T NLRP2 Missense_Mutation p.G474W 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A184-06 19 57328597 57328597 G T PEG3 Missense_Mutation p.H405N 0.32 deleterious(0.03) benign(0.201) TCGA-EE-A184-06 19 57328938 57328938 G T PEG3 Missense_Mutation p.T291N 0.40 deleterious(0.03) possibly_damaging(0.575) TCGA-EE-A184-06 19 57642237 57642237 G T USP29 Nonsense_Mutation p.E732* 0.50 TCGA-EE-A184-06 19 9082643 9082643 C A MUC16 Missense_Mutation p.G3058W 0.41 unknown(0) TCGA-EE-A184-06 1 115256528 115256528 T G NRAS Missense_Mutation p.Q61H 0.85 deleterious(0) possibly_damaging(0.531) TCGA-EE-A184-06 1 118166425 118166425 G T FAM46C Missense_Mutation p.R312M 0.43 deleterious(0.02) possibly_damaging(0.533) TCGA-EE-A184-06 1 119427633 119427633 G T TBX15 Missense_Mutation p.L405I 0.24 deleterious(0.01) benign(0.232) TCGA-EE-A184-06 1 1374540 1374540 C T VWA1 Silent p.T237T 0.45 TCGA-EE-A184-06 1 147597254 147597254 A C NBPF24 Missense_Mutation p.F69C 0.27 deleterious(0.04) benign(0.26) TCGA-EE-A184-06 1 150720281 150720281 C A CTSS Missense_Mutation p.G290W 0.61 deleterious(0) probably_damaging(0.998) TCGA-EE-A184-06 1 152082741 152082741 C A TCHH Missense_Mutation p.Q984H 0.66 unknown(0) TCGA-EE-A184-06 1 152732929 152732929 G T KPRP Nonsense_Mutation p.E289* 0.22 TCGA-EE-A184-06 1 152799958 152799958 C A LCE1A Missense_Mutation p.Q4K 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EE-A184-06 1 153043245 153043245 G T SPRR2B Missense_Mutation p.P24Q 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EE-A184-06 1 153748448 153748448 G T SLC27A3 Nonsense_Mutation p.G206* 0.36 TCGA-EE-A184-06 1 154227725 154227725 C A UBAP2L Silent p.T669T 0.69 TCGA-EE-A184-06 1 154300326 154300326 C A ATP8B2 Silent p.S17S 0.16 TCGA-EE-A184-06 1 155722072 155722072 A G GON4L Missense_Mutation p.F2050S 0.70 tolerated_low_confidence(0.49) possibly_damaging(0.504) TCGA-EE-A184-06 1 159275846 159275846 G T FCER1A Missense_Mutation p.G134C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A184-06 1 160523604 160523604 G A CD84 Intron 0.69 TCGA-EE-A184-06 1 16065769 16065769 G T SLC25A34 Missense_Mutation p.Q261H 0.30 deleterious(0.01) possibly_damaging(0.643) TCGA-EE-A184-06 1 161594326 161594326 G T FCGR3B Missense_Mutation p.F263L 0.65 tolerated(0.1) benign(0.276) TCGA-EE-A184-06 1 165513559 165513559 C A LRRC52 Missense_Mutation p.P9H 0.17 tolerated(0.08) benign(0.232) TCGA-EE-A184-06 1 171605569 171605569 C A MYOC Missense_Mutation p.Q337H 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A184-06 1 174979205 174979205 C T CACYBP Missense_Mutation p.T226M 0.14 tolerated(0.25) benign(0.001) TCGA-EE-A184-06 1 17981197 17981197 C A ARHGEF10L Missense_Mutation p.L821I 0.36 tolerated(0.1) benign(0.119) TCGA-EE-A184-06 1 181708321 181708321 C T CACNA1E Silent p.Y1217Y 0.26 TCGA-EE-A184-06 1 184863270 184863270 C A FAM129A Missense_Mutation p.W86L 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A184-06 1 196295854 196295854 C A KCNT2 Missense_Mutation p.D757Y 0.58 deleterious(0) probably_damaging(0.987) TCGA-EE-A184-06 1 196709892 196709892 G A CFH Missense_Mutation p.E976K 0.20 tolerated(0.15) benign(0.016) TCGA-EE-A184-06 1 207737337 207737337 C T CR1 Missense_Mutation p.R1239C 0.16 deleterious(0.01) possibly_damaging(0.462) TCGA-EE-A184-06 1 209933495 209933495 C A TRAF3IP3 Silent p.P37P 0.22 TCGA-EE-A184-06 1 209953951 209953951 G T TRAF3IP3 Missense_Mutation p.E483D 0.15 deleterious(0) possibly_damaging(0.736) TCGA-EE-A184-06 1 220826477 220826477 G T MARK1 Missense_Mutation p.A591S 0.20 tolerated(0.5) benign(0.016) TCGA-EE-A184-06 1 23720379 23720379 G A TCEA3 Missense_Mutation p.T271M 0.71 deleterious(0.03) possibly_damaging(0.48) TCGA-EE-A184-06 1 240656263 240656263 C A GREM2 3'UTR 0.15 TCGA-EE-A184-06 1 247587301 247587301 G T NLRP3 Nonsense_Mutation p.E186* 0.56 TCGA-EE-A184-06 1 247599359 247599359 G T NLRP3 Silent p.V862V 0.28 TCGA-EE-A184-06 1 28887878 28887878 C A TRNAU1AP Missense_Mutation p.N82K 0.41 deleterious(0) probably_damaging(0.95) TCGA-EE-A184-06 1 40363545 40363545 G T MYCL Silent p.P228P 0.37 TCGA-EE-A184-06 1 43296229 43296229 C A ERMAP Intron 0.39 TCGA-EE-A184-06 1 43396303 43396303 G A SLC2A1 Silent p.I170I 0.70 TCGA-EE-A184-06 1 4715445 4715445 G T AJAP1 5'UTR 0.35 TCGA-EE-A184-06 1 51323654 51323654 C A FAF1 Nonsense_Mutation p.E21* 0.33 TCGA-EE-A184-06 1 86852689 86852689 C A ODF2L Nonsense_Mutation p.G8* 0.46 TCGA-EE-A184-06 1 92612820 92612820 C A BTBD8 Nonsense_Mutation p.C338* 0.33 TCGA-EE-A184-06 1 94997946 94997946 G T F3 Silent p.R228R 0.40 TCGA-EE-A184-06 1 979052 979052 C A AGRN Missense_Mutation p.L580M 0.28 deleterious(0.03) possibly_damaging(0.887) TCGA-EE-A184-06 20 30904662 30904662 G T KIF3B Missense_Mutation p.R578M 0.11 deleterious(0) possibly_damaging(0.712) TCGA-EE-A184-06 20 33442705 33442705 G T GGT7 Missense_Mutation p.P375Q 0.37 deleterious(0) possibly_damaging(0.815) TCGA-EE-A184-06 20 33444642 33444642 G T GGT7 Missense_Mutation p.L357I 0.37 tolerated(0.29) benign(0.026) TCGA-EE-A184-06 20 3556568 3556568 C A ATRN Silent p.P729P 0.39 TCGA-EE-A184-06 20 41385186 41385186 G T PTPRT Missense_Mutation p.Q259K 0.54 tolerated(1) benign(0.002) TCGA-EE-A184-06 20 43399954 43399954 G T RIMS4 Silent p.S67S 0.40 TCGA-EE-A184-06 20 47990039 47990039 G T KCNB1 Silent p.P686P 0.44 TCGA-EE-A184-06 20 48124461 48124461 G T PTGIS Missense_Mutation p.P500Q 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A184-06 20 55012539 55012539 G T CASS4 Missense_Mutation p.W119L 0.37 deleterious(0.02) benign(0.387) TCGA-EE-A184-06 20 58571080 58571080 C A CDH26 Missense_Mutation p.P620H 0.49 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A184-06 20 60737980 60737980 C T SS18L1 Silent p.S183S 0.52 TCGA-EE-A184-06 21 19647594 19647594 G T TMPRSS15 Missense_Mutation p.Q942K 0.36 deleterious(0.04) benign(0.112) TCGA-EE-A184-06 21 31538470 31538470 C A CLDN17 Missense_Mutation p.G156C 0.42 deleterious(0) probably_damaging(0.93) TCGA-EE-A184-06 21 31587640 31587640 G T CLDN8 Missense_Mutation p.H202N 0.30 tolerated(0.14) benign(0.146) TCGA-EE-A184-06 21 41165479 41165479 C A IGSF5 Missense_Mutation p.P356H 0.28 deleterious(0) probably_damaging(0.953) TCGA-EE-A184-06 21 46066631 46066631 C A KRTAP10-11 Missense_Mutation p.Q86K 0.33 tolerated(0.06) unknown(0) TCGA-EE-A184-06 21 46086528 46086528 G T KRTAP12-2 Silent p.P92P 0.33 TCGA-EE-A184-06 22 22782060 22782060 C A IGLV5-37 Missense_Mutation p.Q20K 0.27 deleterious(0) benign(0.331) TCGA-EE-A184-06 22 23223476 23223476 C T IGLV3-1 Silent p.G82G 0.12 TCGA-EE-A184-06 22 32929779 32929779 C T SYN3 Silent p.E365E 0.13 TCGA-EE-A184-06 22 35481452 35481452 C A ISX Silent p.P168P 0.10 TCGA-EE-A184-06 22 36897306 36897306 G A FOXRED2 Missense_Mutation p.H400Y 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A184-06 22 37770177 37770177 G T ELFN2 Silent p.P466P 0.28 TCGA-EE-A184-06 22 38086703 38086703 G T NOL12 Splice_Site p.X128_splice 0.08 TCGA-EE-A184-06 22 39811105 39811105 G A TAB1 Missense_Mutation p.G43D 0.30 tolerated(0.12) benign(0.32) TCGA-EE-A184-06 22 40704566 40704566 G T TNRC6B Nonsense_Mutation p.G1391* 0.68 TCGA-EE-A184-06 22 41622690 41622690 G T L3MBTL2 Missense_Mutation p.W510L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 22 44107483 44107483 C A EFCAB6 Missense_Mutation p.K301N 0.57 tolerated(0.48) benign(0.049) TCGA-EE-A184-06 22 45795021 45795021 T G SMC1B Missense_Mutation p.E356A 0.22 tolerated(0.07) possibly_damaging(0.69) TCGA-EE-A184-06 22 47086075 47086075 A G CERK Missense_Mutation p.V452A 0.07 deleterious(0) benign(0.373) TCGA-EE-A184-06 22 50686181 50686181 C T HDAC10 Silent p.E454E 0.21 TCGA-EE-A184-06 22 50686183 50686183 C T HDAC10 Missense_Mutation p.E454K 0.22 tolerated(0.07) benign(0.04) TCGA-EE-A184-06 22 50686332 50686332 C T HDAC10 Missense_Mutation p.E442K 0.67 tolerated(0.21) benign(0.074) TCGA-EE-A184-06 22 50686339 50686339 C T HDAC10 Silent p.E439E 0.67 TCGA-EE-A184-06 22 50686341 50686341 C T HDAC10 Missense_Mutation p.E439K 0.70 tolerated(0.14) benign(0.013) TCGA-EE-A184-06 22 50686482 50686482 C T HDAC10 Missense_Mutation p.A392T 0.78 tolerated(0.3) benign(0.006) TCGA-EE-A184-06 22 50686488 50686488 C T HDAC10 Missense_Mutation p.A390T 0.77 tolerated(0.43) benign(0.002) TCGA-EE-A184-06 22 50686860 50686860 C T HDAC10 Missense_Mutation p.M316I 0.72 tolerated(0.06) possibly_damaging(0.633) TCGA-EE-A184-06 22 50686864 50686864 C T HDAC10 Missense_Mutation p.C315Y 0.72 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 2 113675292 113675292 G T IL37 Missense_Mutation p.G116W 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 2 121736037 121736037 G T GLI2 Nonsense_Mutation p.E466* 0.34 TCGA-EE-A184-06 2 127950714 127950714 C A CYP27C1 Missense_Mutation p.G320W 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 2 136033229 136033229 T G ZRANB3 Missense_Mutation p.T355P 0.24 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A184-06 2 155265526 155265526 G T GALNT13 Missense_Mutation p.D443Y 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 2 178080308 178080308 T A HNRNPA3 Missense_Mutation p.F38L 0.45 deleterious(0.04) benign(0.11) TCGA-EE-A184-06 2 179436938 179436938 C A TTN Nonsense_Mutation p.E24641* 0.38 TCGA-EE-A184-06 2 179585273 179585273 C T TTN Missense_Mutation p.R7739Q 0.43 TCGA-EE-A184-06 2 179633575 179633575 G T TTN Silent p.G2996G 0.26 TCGA-EE-A184-06 2 202052510 202052510 C A CASP10 Silent p.P143P 0.40 TCGA-EE-A184-06 2 204305427 204305427 G T RAPH1 Missense_Mutation p.P829H 0.42 probably_damaging(0.953) TCGA-EE-A184-06 2 219204768 219204768 C A PNKD Silent p.P123P 0.36 TCGA-EE-A184-06 2 220412545 220412545 C A TMEM198 Missense_Mutation p.L162M 0.26 deleterious(0) possibly_damaging(0.887) TCGA-EE-A184-06 2 233037384 233037384 G T DIS3L2 Intron 0.33 TCGA-EE-A184-06 2 29443618 29443618 G A ALK Missense_Mutation p.A1200V 0.45 deleterious(0) benign(0.286) TCGA-EE-A184-06 2 74275057 74275057 C A TET3 Silent p.P536P 0.50 TCGA-EE-A184-06 2 88056362 88056362 G T PLGLB2 3'UTR 0.26 TCGA-EE-A184-06 2 95815421 95815421 C A ZNF514 Missense_Mutation p.S270I 0.43 tolerated(0.21) possibly_damaging(0.463) TCGA-EE-A184-06 2 97009953 97009953 G T NCAPH Missense_Mutation p.D236Y 0.42 deleterious(0) probably_damaging(0.925) TCGA-EE-A184-06 3 10128860 10128860 C A FANCD2 Silent p.P1126P 0.29 TCGA-EE-A184-06 3 11064047 11064047 G T SLC6A1 Missense_Mutation p.G203W 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 3 121822564 121822564 G T CD86 Silent p.S90S 0.31 TCGA-EE-A184-06 3 128292485 128292485 G T C3orf27 Missense_Mutation p.Q30K 0.31 benign(0.092) TCGA-EE-A184-06 3 133473449 133473449 G T TF Missense_Mutation p.G146W 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 3 13420462 13420462 G T NUP210 Missense_Mutation p.A332D 0.44 deleterious(0) possibly_damaging(0.616) TCGA-EE-A184-06 3 137729025 137729025 G T CLDN18 5'UTR 0.70 TCGA-EE-A184-06 3 138762971 138762971 C T PRR23C Silent p.P164P 0.50 TCGA-EE-A184-06 3 16217075 16217075 G T GALNT15 Missense_Mutation p.E139D 0.36 tolerated(0.23) benign(0.011) TCGA-EE-A184-06 3 16254193 16254193 C T GALNT15 Missense_Mutation p.R439C 0.48 deleterious(0.01) benign(0.035) TCGA-EE-A184-06 3 164737442 164737442 C A SI Missense_Mutation p.R1124L 0.43 tolerated(0.12) possibly_damaging(0.905) TCGA-EE-A184-06 3 168834350 168834350 C T MECOM Missense_Mutation p.G314E 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A184-06 3 183966536 183966536 C T ALG3 Missense_Mutation p.A65T 0.29 tolerated(0.06) benign(0.201) TCGA-EE-A184-06 3 195300832 195300832 C A APOD Missense_Mutation p.R45I 0.28 deleterious(0) possibly_damaging(0.671) TCGA-EE-A184-06 3 195492275 195492275 G T MUC4 Missense_Mutation p.P4555H 0.21 possibly_damaging(0.612) TCGA-EE-A184-06 3 45052801 45052801 C A EXOSC7 Silent p.P282P 0.53 TCGA-EE-A184-06 3 48697877 48697877 G T CELSR3 Missense_Mutation p.H731N 0.19 tolerated(0.12) possibly_damaging(0.77) TCGA-EE-A184-06 3 49146439 49146439 G A USP19 Silent p.L1404L 0.42 TCGA-EE-A184-06 3 51440667 51440667 C A VPRBP Nonsense_Mutation p.E1030* 0.32 TCGA-EE-A184-06 3 51475839 51475839 G T VPRBP Silent p.P196P 0.46 TCGA-EE-A184-06 3 52097238 52097238 G T LINC00696 Silent p.P110P 0.25 TCGA-EE-A184-06 4 103517372 103517372 G T NFKB1 Missense_Mutation p.G460W 0.25 deleterious(0.02) possibly_damaging(0.525) TCGA-EE-A184-06 4 110909779 110909779 C A EGF Missense_Mutation p.P883H 0.10 tolerated(0.18) benign(0.071) TCGA-EE-A184-06 4 119161824 119161824 G T NDST3 Missense_Mutation p.W755L 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A184-06 4 13545655 13545655 C A NKX3-2 Silent p.P128P 0.43 TCGA-EE-A184-06 4 149075847 149075847 C A NR3C2 Missense_Mutation p.M740I 0.32 deleterious(0.03) benign(0) TCGA-EE-A184-06 4 15964237 15964237 C A FGFBP2 Silent p.L172L 0.23 TCGA-EE-A184-06 4 167810285 167810285 C A SPOCK3 Missense_Mutation p.K198N 0.49 deleterious(0.03) possibly_damaging(0.776) TCGA-EE-A184-06 4 20598100 20598100 T C SLIT2 Missense_Mutation p.F1128S 0.56 tolerated(0.4) benign(0.213) TCGA-EE-A184-06 4 3318150 3318150 G T RGS12 Missense_Mutation p.G85W 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 4 42003751 42003751 G T SLC30A9 Missense_Mutation p.Q76H 0.19 tolerated_low_confidence(0.13) benign(0.002) TCGA-EE-A184-06 4 49030677 49030677 G T CWH43 Missense_Mutation p.W433L 0.26 deleterious(0) probably_damaging(0.978) TCGA-EE-A184-06 4 55972015 55972015 G T KDR Silent p.I543I 0.35 TCGA-EE-A184-06 4 73959836 73959836 T C ANKRD17 Missense_Mutation p.K1763E 0.55 possibly_damaging(0.458) TCGA-EE-A184-06 4 79418010 79418010 G A FRAS1 Missense_Mutation p.E3004K 0.57 probably_damaging(1) TCGA-EE-A184-06 4 84350799 84350799 G T HELQ Missense_Mutation p.T799N 0.34 deleterious(0.05) possibly_damaging(0.474) TCGA-EE-A184-06 4 8613821 8613821 G T CPZ Missense_Mutation p.R432M 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A184-06 4 94032086 94032086 C A GRID2 Silent p.A239A 0.15 TCGA-EE-A184-06 4 960292 960292 C T DGKQ Missense_Mutation p.E464K 0.74 deleterious(0.01) benign(0.426) TCGA-EE-A184-06 5 115152014 115152014 C A CDO1 Missense_Mutation p.E27D 0.40 tolerated(0.55) benign(0) TCGA-EE-A184-06 5 1278788 1278788 G T TERT Missense_Mutation p.H752N 0.16 tolerated(0.69) benign(0.01) TCGA-EE-A184-06 5 131647793 131647793 G T SLC22A4 Intron 0.27 TCGA-EE-A184-06 5 134785550 134785550 G T TIFAB Missense_Mutation p.P27Q 0.37 tolerated(0.43) benign(0.002) TCGA-EE-A184-06 5 136328235 136328235 C T SPOCK1 Missense_Mutation p.G215E 0.38 tolerated(0.13) probably_damaging(0.986) TCGA-EE-A184-06 5 13753355 13753355 C T DNAH5 Missense_Mutation p.R3620Q 0.09 possibly_damaging(0.553) TCGA-EE-A184-06 5 140214949 140214949 C A PCDHA7 Missense_Mutation p.F327L 0.35 tolerated_low_confidence(0.56) benign(0) TCGA-EE-A184-06 5 140503919 140503919 G T PCDHB4 Missense_Mutation p.R780M 0.42 deleterious_low_confidence(0.02) benign(0.027) TCGA-EE-A184-06 5 140751047 140751047 G T PCDHGB3 Silent p.L362L 0.40 TCGA-EE-A184-06 5 141016144 141016144 G T HDAC3 Missense_Mutation p.L37M 0.36 tolerated(0.48) benign(0.098) TCGA-EE-A184-06 5 141236886 141236886 G T PCDH1 Missense_Mutation p.L1084M 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A184-06 5 147020327 147020327 T G JAKMIP2 Silent p.S447S 0.34 TCGA-EE-A184-06 5 148207496 148207496 G T ADRB2 Missense_Mutation p.V368L 0.22 tolerated(0.39) benign(0.001) TCGA-EE-A184-06 5 150275222 150275222 C A ZNF300 Missense_Mutation p.G543W 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 5 150439957 150439957 C A TNIP1 Splice_Site p.X120_splice 0.43 TCGA-EE-A184-06 5 168180101 168180101 A C SLIT3 Missense_Mutation p.M611R 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A184-06 5 172744956 172744956 G T STC2 Missense_Mutation p.P268Q 0.34 tolerated_low_confidence(0.19) benign(0.081) TCGA-EE-A184-06 5 38924539 38924539 C G OSMR Missense_Mutation p.P629R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 5 38963125 38963125 C G RICTOR Missense_Mutation p.L473F 0.27 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A184-06 5 39331858 39331858 C A C9 Nonsense_Mutation p.G179* 0.17 TCGA-EE-A184-06 5 50129836 50129836 C A PARP8 Silent p.S777S 0.23 TCGA-EE-A184-06 5 73187936 73187936 G T ARHGEF28 Missense_Mutation p.E1149D 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A184-06 5 77536740 77536741 - T AP3B1 Frame_Shift_Ins p.N75Kfs*4 0.31 TCGA-EE-A184-06 5 79030367 79030367 G T CMYA5 Missense_Mutation p.G1927W 0.30 possibly_damaging(0.73) TCGA-EE-A184-06 5 83402504 83402504 C A EDIL3 Missense_Mutation p.W205L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A184-06 5 89933721 89933721 T G GPR98 Missense_Mutation p.D732E 0.27 possibly_damaging(0.739) TCGA-EE-A184-06 6 117609814 117609814 C A ROS1 Missense_Mutation p.Q2295H 0.69 deleterious_low_confidence(0.01) benign(0.235) TCGA-EE-A184-06 6 127607950 127607950 T G RNF146 Silent p.A64A 0.63 TCGA-EE-A184-06 6 127775032 127775032 C A KIAA0408 Missense_Mutation p.W32L 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A184-06 6 132649618 132649618 G T MOXD1 Missense_Mutation p.P260H 0.69 deleterious(0) probably_damaging(0.982) TCGA-EE-A184-06 6 150239517 150239517 G T RAET1G Missense_Mutation p.P212Q 0.43 deleterious(0.04) possibly_damaging(0.737) TCGA-EE-A184-06 6 30140133 30140133 G A TRIM15 3'UTR 0.20 TCGA-EE-A184-06 6 31079834 31079834 G A C6orf15 Missense_Mutation p.S101L 0.32 tolerated(0.36) benign(0.055) TCGA-EE-A184-06 6 32006496 32006496 C A CYP21A2 Intron 0.45 TCGA-EE-A184-06 6 33145910 33145910 G T COL11A2 Missense_Mutation p.P538H 0.54 probably_damaging(0.95) TCGA-EE-A184-06 6 42934283 42934283 G T PEX6 Missense_Mutation p.Q692K 0.24 tolerated(0.25) benign(0.004) TCGA-EE-A184-06 6 49701443 49701443 G T CRISP3 Silent p.P155P 0.51 TCGA-EE-A184-06 6 70647929 70647929 G T COL19A1 Splice_Site p.X292_splice 0.38 TCGA-EE-A184-06 6 76540194 76540194 C T MYO6 Missense_Mutation p.S108F 0.31 deleterious(0) unknown(0) TCGA-EE-A184-06 6 78172118 78172118 G T HTR1B Missense_Mutation p.L335I 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A184-06 6 87796111 87796111 G T CGA Missense_Mutation p.Q44K 0.32 tolerated(1) benign(0) TCGA-EE-A184-06 7 100687039 100687039 C A MUC17 Silent p.P4114P 0.41 TCGA-EE-A184-06 7 101870822 101870822 C A CUX1 Silent p.P1113P 0.27 TCGA-EE-A184-06 7 120478967 120478967 C A TSPAN12 Splice_Site p.X50_splice 0.35 TCGA-EE-A184-06 7 135302386 135302386 C A NUP205 Missense_Mutation p.L1243I 0.38 tolerated(0.22) possibly_damaging(0.897) TCGA-EE-A184-06 7 138603046 138603046 C A KIAA1549 Silent p.V442V 0.30 TCGA-EE-A184-06 7 142480004 142480004 C A PRSS3P2 RNA 0.16 TCGA-EE-A184-06 7 142881285 142881285 G T TAS2R39 Missense_Mutation p.M258I 0.40 tolerated(0.41) benign(0.002) TCGA-EE-A184-06 7 143633062 143633062 C A OR2F2 Missense_Mutation p.T246K 0.45 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A184-06 7 148801090 148801090 G T ZNF425 Missense_Mutation p.L625M 0.18 tolerated(0.24) probably_damaging(0.941) TCGA-EE-A184-06 7 149981869 149981869 G T ACTR3C Silent p.P179P 0.38 TCGA-EE-A184-06 7 150027647 150027647 T C ZBED6CL Silent p.L52L 0.34 TCGA-EE-A184-06 7 150647239 150647239 C A KCNH2 Intron 0.48 TCGA-EE-A184-06 7 2418774 2418774 G T EIF3B Missense_Mutation p.L746F 0.35 tolerated(0.11) possibly_damaging(0.888) TCGA-EE-A184-06 7 55272965 55272965 C A EGFR Silent p.S1096S 0.31 TCGA-EE-A184-06 7 73452041 73452041 G T ELN Silent p.L56L 0.42 TCGA-EE-A184-06 7 751148 751148 G T PRKAR1B 5'UTR 0.48 TCGA-EE-A184-06 7 77010642 77010642 G T GSAP Missense_Mutation p.Q186K 0.22 tolerated(0.79) benign(0.006) TCGA-EE-A184-06 7 82582386 82582386 G T PCLO Missense_Mutation p.A2628D 0.15 unknown(0) TCGA-EE-A184-06 8 125520735 125520735 C A TATDN1 Missense_Mutation p.D166Y 0.32 deleterious(0.02) benign(0.05) TCGA-EE-A184-06 8 142458048 142458048 G T SNORD5 3'Flank 0.50 TCGA-EE-A184-06 8 144408405 144408405 C A TOP1MT Missense_Mutation p.R157M 0.50 deleterious(0) possibly_damaging(0.863) TCGA-EE-A184-06 8 145617999 145617999 G T ADCK5 Missense_Mutation p.R510L 0.45 deleterious(0.01) benign(0.162) TCGA-EE-A184-06 8 22265865 22265865 G T SLC39A14 Nonsense_Mutation p.E105* 0.36 TCGA-EE-A184-06 8 24771612 24771612 G A NEFM Silent p.K102K 0.33 TCGA-EE-A184-06 8 2820092 2820092 G A CSMD1 Missense_Mutation p.S3175F 0.39 probably_damaging(0.999) TCGA-EE-A184-06 8 29923607 29923607 G T TMEM66 Silent p.P297P 0.23 TCGA-EE-A184-06 8 87680367 87680367 C A CNGB3 Nonsense_Mutation p.E175* 0.37 TCGA-EE-A184-06 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.35 deleterious(0.03) possibly_damaging(0.564) TCGA-EE-A184-06 8 95835787 95835787 C A INTS8 Missense_Mutation p.P43Q 0.45 deleterious(0) possibly_damaging(0.54) TCGA-EE-A184-06 9 104314989 104314989 C T RNF20 Missense_Mutation p.R619W 0.49 deleterious(0) probably_damaging(0.973) TCGA-EE-A184-06 9 107361505 107361505 C A OR13C5 Missense_Mutation p.G64W 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A184-06 9 107380171 107380171 C A OR13C9 Missense_Mutation p.L105F 0.42 tolerated(0.88) benign(0.023) TCGA-EE-A184-06 9 109687519 109687519 C A ZNF462 Silent p.P442P 0.15 TCGA-EE-A184-06 9 114411942 114411942 G T DNAJC25 Missense_Mutation p.K233N 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A184-06 9 115336503 115336503 G T KIAA1958 Missense_Mutation p.W48L 0.44 deleterious(0) possibly_damaging(0.857) TCGA-EE-A184-06 9 116931364 116931364 C A COL27A1 Missense_Mutation p.P510Q 0.37 unknown(0) TCGA-EE-A184-06 9 117122051 117122051 G T AKNA Missense_Mutation p.P772Q 0.40 deleterious(0) possibly_damaging(0.864) TCGA-EE-A184-06 9 140000631 140000631 G T MAN1B1 Missense_Mutation p.G437W 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A184-06 9 22447217 22447217 C A DMRTA1 Silent p.P51P 0.24 TCGA-EE-A184-06 9 34290362 34290362 C A KIF24 Nonsense_Mutation p.G313* 0.12 TCGA-EE-A184-06 9 37521655 37521655 C A FBXO10 Missense_Mutation p.W704L 0.11 deleterious(0.02) possibly_damaging(0.818) TCGA-EE-A184-06 9 71155749 71155749 C A TMEM252 5'UTR 0.47 TCGA-EE-A184-06 9 88916409 88916409 C A ZCCHC6 Missense_Mutation p.R1401M 0.39 deleterious(0) possibly_damaging(0.592) TCGA-EE-A184-06 9 91628367 91628367 G T SHC3 Missense_Mutation p.Q594K 0.42 deleterious(0.04) benign(0.005) TCGA-EE-A184-06 X 100808228 100808228 G A ARMCX1 Silent p.E105E 0.64 TCGA-EE-A184-06 X 102337259 102337259 C A NXF3 Missense_Mutation p.G272W 0.77 deleterious(0) probably_damaging(0.995) TCGA-EE-A184-06 X 152225667 152225667 G T PNMA3 Missense_Mutation p.K85N 0.62 tolerated(0.1) benign(0.142) TCGA-EE-A184-06 X 53454997 53454997 G T RIBC1 Missense_Mutation p.R55L 0.62 deleterious(0) probably_damaging(0.949) TCGA-EE-A184-06 X 69640028 69640028 G T KIF4A Missense_Mutation p.K1204N 0.81 deleterious_low_confidence(0.04) possibly_damaging(0.564) TCGA-EE-A184-06 X 99661580 99661580 C A PCDH19 Missense_Mutation p.M672I 0.77 tolerated(0.34) benign(0) TCGA-EE-A185-06 10 102116451 102116451 C T SCD Silent p.L270L 0.91 TCGA-EE-A185-06 10 24833125 24833125 G A KIAA1217 Silent p.E1642E 0.88 TCGA-EE-A185-06 10 30317935 30317935 C T KIAA1462 Missense_Mutation p.G381E 0.89 tolerated(1) benign(0.023) TCGA-EE-A185-06 10 55721526 55721526 T A PCDH15 Missense_Mutation p.T999S 0.82 tolerated(0.85) benign(0.028) TCGA-EE-A185-06 10 71883676 71883676 G A AIFM2 Silent p.A55A 0.81 TCGA-EE-A185-06 10 75082751 75082751 G A TTC18 Silent p.Y364Y 0.76 TCGA-EE-A185-06 10 85982013 85982013 G A LRIT2 Missense_Mutation p.P439L 0.80 tolerated(0.12) benign(0.022) TCGA-EE-A185-06 10 96084290 96084290 G A PLCE1 Missense_Mutation p.G2229E 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A185-06 11 117063910 117063910 C T SIDT2 Missense_Mutation p.S716F 0.40 deleterious(0) probably_damaging(0.995) TCGA-EE-A185-06 11 120008138 120008138 G A TRIM29 Missense_Mutation p.P201L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A185-06 11 122669709 122669709 C T UBASH3B Missense_Mutation p.R473C 0.37 deleterious(0.02) probably_damaging(1) TCGA-EE-A185-06 11 125769495 125769495 C T HYLS1 Missense_Mutation p.P78S 0.40 tolerated(0.83) benign(0.006) TCGA-EE-A185-06 11 130013310 130013310 C T APLP2 Silent p.P753P 0.36 TCGA-EE-A185-06 11 17139151 17139151 G A PIK3C2A Silent p.L1035L 0.41 TCGA-EE-A185-06 11 3690440 3690440 G A CHRNA10 Silent p.I116I 0.39 TCGA-EE-A185-06 11 40137769 40137769 G A LRRC4C Missense_Mutation p.P25L 0.45 tolerated_low_confidence(0.14) benign(0.027) TCGA-EE-A185-06 11 48285553 48285553 C T OR4X1 Silent p.I47I 0.53 TCGA-EE-A185-06 11 5068657 5068657 G A OR52J3 Missense_Mutation p.R301Q 0.36 tolerated(0.09) possibly_damaging(0.573) TCGA-EE-A185-06 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.43 tolerated(1) benign(0.04) TCGA-EE-A185-06 11 55110709 55110709 C T OR4A16 Silent p.V11V 0.39 TCGA-EE-A185-06 11 55110928 55110928 C T OR4A16 Silent p.L84L 0.45 TCGA-EE-A185-06 11 56756518 56756518 G A OR5AK2 Missense_Mutation p.G44R 0.28 deleterious(0) probably_damaging(0.983) TCGA-EE-A185-06 11 60230528 60230528 G A MS4A1 Missense_Mutation p.M71I 0.49 tolerated(0.1) benign(0.034) TCGA-EE-A185-06 11 62368097 62368097 G A MTA2 Silent p.N31N 0.48 TCGA-EE-A185-06 11 64326684 64326684 C T SLC22A11 Silent p.S157S 0.40 TCGA-EE-A185-06 11 67223192 67223192 C T CABP4 Missense_Mutation p.R100C 0.33 deleterious(0.03) benign(0.027) TCGA-EE-A185-06 11 6806693 6806693 G A OR2AG1 Nonsense_Mutation p.W142* 0.50 TCGA-EE-A185-06 11 71249346 71249346 C T KRTAP5-8 Missense_Mutation p.S82F 0.51 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A185-06 11 74340341 74340341 C G POLD3 Missense_Mutation p.P327A 0.37 tolerated(0.27) probably_damaging(1) TCGA-EE-A185-06 11 74340342 74340342 C T POLD3 Missense_Mutation p.P327L 0.35 tolerated(0.36) probably_damaging(1) TCGA-EE-A185-06 11 78440596 78440596 G A TENM4 Silent p.I1077I 0.36 TCGA-EE-A185-06 11 92715223 92715223 C T MTNR1B Silent p.P278P 0.40 TCGA-EE-A185-06 12 119540077 119540077 G A SRRM4 Silent p.Q56Q 0.34 TCGA-EE-A185-06 12 41421659 41421659 C T CNTN1 Missense_Mutation p.P904L 0.35 deleterious(0) probably_damaging(0.965) TCGA-EE-A185-06 12 46633675 46633675 C T SLC38A1 Intron 0.44 TCGA-EE-A185-06 12 4705316 4705316 T C DYRK4 Missense_Mutation p.V95A 0.37 deleterious(0) probably_damaging(0.929) TCGA-EE-A185-06 12 49938070 49938070 C T KCNH3 Missense_Mutation p.A365V 0.41 tolerated(0.37) benign(0.038) TCGA-EE-A185-06 12 88379718 88379718 G A C12orf50 Silent p.V345V 0.43 TCGA-EE-A185-06 12 99053033 99053033 C T APAF1 Nonsense_Mutation p.Q208* 0.50 TCGA-EE-A185-06 13 103703668 103703668 G A SLC10A2 Missense_Mutation p.P234S 0.37 deleterious(0) probably_damaging(0.986) TCGA-EE-A185-06 13 113030784 113030784 G A SPACA7 Missense_Mutation p.V29M 0.50 tolerated(0.52) benign(0.004) TCGA-EE-A185-06 13 28519363 28519363 G A ATP5EP2 5'UTR 0.31 TCGA-EE-A185-06 13 38211017 38211017 G A TRPC4 3'UTR 0.46 TCGA-EE-A185-06 13 52972044 52972044 G A THSD1 Missense_Mutation p.P115L 0.32 tolerated(0.26) benign(0.094) TCGA-EE-A185-06 13 52972045 52972045 G A THSD1 Missense_Mutation p.P115S 0.32 tolerated(0.39) benign(0.009) TCGA-EE-A185-06 13 61986466 61986466 C T PCDH20 Missense_Mutation p.G589E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A185-06 14 101456430 101456430 G A SNORD114-29 RNA 0.29 TCGA-EE-A185-06 14 102829213 102829213 G A CINP 5'Flank 0.25 TCGA-EE-A185-06 14 102973339 102973339 G A ANKRD9 Silent p.P296P 0.24 TCGA-EE-A185-06 14 102973340 102973340 G A ANKRD9 Missense_Mutation p.P296L 0.22 tolerated(0.18) probably_damaging(0.994) TCGA-EE-A185-06 14 106320645 106320645 G A IGHM Missense_Mutation p.P389S 0.45 tolerated(0.33) benign(0.411) TCGA-EE-A185-06 14 21993037 21993037 G A SALL2 Silent p.F275F 0.43 TCGA-EE-A185-06 14 22636339 22636339 G A TRAV30 Silent p.L5L 0.45 TCGA-EE-A185-06 14 23855163 23855163 C T MYH6 Missense_Mutation p.E1713K 0.45 deleterious(0.01) possibly_damaging(0.624) TCGA-EE-A185-06 14 36946189 36946189 G A SFTA3 Missense_Mutation p.S83L 0.43 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EE-A185-06 15 35192830 35192830 G A AQR Missense_Mutation p.P746S 0.40 deleterious(0) probably_damaging(0.977) TCGA-EE-A185-06 15 49776684 49776684 C T FGF7 Missense_Mutation p.P190S 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A185-06 15 59466433 59466433 G A MYO1E Missense_Mutation p.L686F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A185-06 15 64449083 64449083 G T PPIB Missense_Mutation p.F123L 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A185-06 16 107199 107199 G A SNRNP25 3'UTR 0.36 TCGA-EE-A185-06 16 111688 111688 G A RHBDF1 Silent p.F405F 0.41 TCGA-EE-A185-06 16 11272445 11272445 C T CLEC16A Silent p.S1020S 0.39 TCGA-EE-A185-06 16 20975188 20975188 C T DNAH3 Missense_Mutation p.E3340K 0.39 tolerated(0.57) benign(0.011) TCGA-EE-A185-06 16 20976176 20976176 G A DNAH3 Silent p.G3010G 0.43 TCGA-EE-A185-06 16 30964993 30964993 G A ORAI3 Missense_Mutation p.G239E 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.778) TCGA-EE-A185-06 16 77369679 77369679 G A ADAMTS18 Silent p.F611F 0.85 TCGA-EE-A185-06 16 8862775 8862775 C T ABAT Missense_Mutation p.P254L 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A185-06 16 89347908 89347908 G - ANKRD11 Frame_Shift_Del p.A1681Efs*5 0.44 TCGA-EE-A185-06 17 11650884 11650884 G A DNAH9 Silent p.L2137L 0.93 TCGA-EE-A185-06 17 21730972 21730972 G A UBBP4 Missense_Mutation p.E92K 0.53 deleterious(0.01) possibly_damaging(0.657) TCGA-EE-A185-06 17 33343492 33343492 G T RFFL Silent p.I261I 0.42 TCGA-EE-A185-06 17 33690173 33690173 G A SLFN11 Silent p.F218F 0.43 TCGA-EE-A185-06 17 38068632 38068632 G A GSDMB Silent p.I118I 0.52 TCGA-EE-A185-06 17 41343555 41343555 C T NBR1 Missense_Mutation p.P344S 0.17 tolerated(0.21) benign(0.016) TCGA-EE-A185-06 17 44115908 44115929 GTGCTGGCTGTAACCTGTGAGC - KANSL1 Frame_Shift_Del p.S839Nfs*6 0.58 TCGA-EE-A185-06 17 60814267 60814267 C A MARCH10 Missense_Mutation p.G321V 0.62 deleterious(0) probably_damaging(0.916) TCGA-EE-A185-06 17 61571427 61571427 G A ACE Missense_Mutation p.R1094K 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A185-06 17 72588331 72588331 G A C17orf77 Missense_Mutation p.G49E 0.60 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A185-06 17 73238436 73238436 C T GGA3 Missense_Mutation p.G243E 0.55 tolerated(0.18) benign(0.026) TCGA-EE-A185-06 17 73238437 73238437 C T GGA3 Missense_Mutation p.G243R 0.57 tolerated(0.06) benign(0.446) TCGA-EE-A185-06 17 8792125 8792125 C T PIK3R5 Missense_Mutation p.E327K 0.83 tolerated(0.15) benign(0.086) TCGA-EE-A185-06 18 43246155 43246155 C T SLC14A2 Nonsense_Mutation p.R510* 0.38 TCGA-EE-A185-06 18 45556191 45556191 C T ZBTB7C Missense_Mutation p.D434N 0.41 deleterious(0) possibly_damaging(0.794) TCGA-EE-A185-06 18 55027323 55027323 G A ST8SIA3 Missense_Mutation p.G320R 0.59 probably_damaging(1) TCGA-EE-A185-06 18 61471508 61471508 G A SERPINB7 Nonsense_Mutation p.W261* 0.38 TCGA-EE-A185-06 19 10247858 10247858 G A DNMT1 Silent p.D1464D 0.47 TCGA-EE-A185-06 19 11569368 11569368 C T ELAVL3 Missense_Mutation p.G131E 0.34 deleterious(0) probably_damaging(0.982) TCGA-EE-A185-06 19 13419008 13419008 G A CACNA1A Silent p.I613I 0.45 TCGA-EE-A185-06 19 14157020 14157020 C T IL27RA Missense_Mutation p.R275C 0.46 deleterious(0.02) possibly_damaging(0.613) TCGA-EE-A185-06 19 16977349 16977349 C T SIN3B Silent p.I628I 0.36 TCGA-EE-A185-06 19 20116763 20116763 G A ZNF682 3'UTR 0.33 TCGA-EE-A185-06 19 20728090 20728090 G A ZNF737 Missense_Mutation p.H307Y 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A185-06 19 35660556 35660556 C T FXYD5 3'UTR 0.38 TCGA-EE-A185-06 19 36322264 36322264 C T NPHS1 Silent p.E1107E 0.43 TCGA-EE-A185-06 19 40747936 40747936 C A AKT2 Missense_Mutation p.G161V 0.40 deleterious(0.03) benign(0.145) TCGA-EE-A185-06 19 43258392 43258392 G A PSG8 3'UTR 0.45 TCGA-EE-A185-06 19 43699306 43699306 C T PSG4 Missense_Mutation p.G277S 0.44 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A185-06 19 44099230 44099230 C T IRGQ Silent p.G87G 0.45 TCGA-EE-A185-06 19 44934705 44934705 C T ZNF229 Missense_Mutation p.G84E 0.58 tolerated(0.61) benign(0) TCGA-EE-A185-06 19 44981504 44981504 G A ZNF180 Silent p.S398S 0.41 TCGA-EE-A185-06 19 45996532 45996532 G A RTN2 Nonsense_Mutation p.Q307* 0.47 TCGA-EE-A185-06 19 45996534 45996534 A C RTN2 Missense_Mutation p.V306G 0.48 tolerated_low_confidence(0.12) benign(0) TCGA-EE-A185-06 19 50958492 50958492 C T MYBPC2 Silent p.F714F 0.47 TCGA-EE-A185-06 19 51647758 51647758 G A SIGLEC7 Missense_Mutation p.G177R 0.36 tolerated(0.05) possibly_damaging(0.666) TCGA-EE-A185-06 19 51647759 51647759 G A SIGLEC7 Missense_Mutation p.G177E 0.35 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A185-06 19 53793745 53793745 T C BIRC8 5'UTR 0.48 TCGA-EE-A185-06 19 54137921 54137921 A G DPRX Missense_Mutation p.I55M 0.52 tolerated(0.36) benign(0.181) TCGA-EE-A185-06 19 55176268 55176268 G A LILRB4 Missense_Mutation p.R225K 0.48 tolerated(0.12) benign(0.006) TCGA-EE-A185-06 19 55508802 55508802 G A NLRP2 Silent p.V999V 0.40 TCGA-EE-A185-06 19 55526398 55526398 G A GP6 Silent p.G305G 0.43 TCGA-EE-A185-06 19 6751248 6751248 G A TRIP10 3'UTR 0.40 TCGA-EE-A185-06 19 757292 757292 G A MISP Missense_Mutation p.G116R 0.44 tolerated(0.16) benign(0.002) TCGA-EE-A185-06 19 8995651 8995651 C T MUC16 Silent p.S13779S 0.54 TCGA-EE-A185-06 19 9047148 9047148 G A MUC16 Missense_Mutation p.P11495S 0.41 benign(0.001) TCGA-EE-A185-06 19 9058517 9058517 T C MUC16 Silent p.E9643E 0.40 TCGA-EE-A185-06 19 9058519 9058519 C T MUC16 Missense_Mutation p.E9643K 0.37 unknown(0) TCGA-EE-A185-06 19 9088734 9088734 C T MUC16 Silent p.T1027T 0.41 TCGA-EE-A185-06 19 9089865 9089865 G A MUC16 Silent p.S650S 0.42 TCGA-EE-A185-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.89 deleterious(0.01) benign(0.045) TCGA-EE-A185-06 1 119964637 119964637 G A HSD3B2 Nonsense_Mutation p.W171* 0.23 TCGA-EE-A185-06 1 119965004 119965004 G A HSD3B2 Missense_Mutation p.G294S 0.73 tolerated(0.16) benign(0.014) TCGA-EE-A185-06 1 12639360 12639360 G A DHRS3 Silent p.L140L 0.92 TCGA-EE-A185-06 1 149763149 149763149 T C FCGR1A 3'UTR 0.84 TCGA-EE-A185-06 1 152681538 152681538 G A LCE4A 5'UTR 0.98 TCGA-EE-A185-06 1 152785266 152785266 G A LCE1B Missense_Mutation p.G115E 0.92 deleterious_low_confidence(0) unknown(0) TCGA-EE-A185-06 1 154522822 154522822 G A UBE2Q1 3'UTR 0.24 TCGA-EE-A185-06 1 155870108 155870108 C A RIT1 3'UTR 0.29 TCGA-EE-A185-06 1 155870322 155870322 C T RIT1 Missense_Mutation p.D190N 0.28 tolerated(0.17) benign(0.121) TCGA-EE-A185-06 1 155874290 155874290 C G RIT1 Missense_Mutation p.E98Q 0.33 tolerated(0.14) probably_damaging(0.985) TCGA-EE-A185-06 1 155885655 155885655 C G KIAA0907 Intron 0.29 TCGA-EE-A185-06 1 167095469 167095469 G A DUSP27 Silent p.Q367Q 0.90 TCGA-EE-A185-06 1 168344763 168344763 G A MIR557 RNA 0.96 TCGA-EE-A185-06 1 17257788 17257788 C T CROCC Silent p.S284S 0.50 TCGA-EE-A185-06 1 175957522 175957522 C G RFWD2 Missense_Mutation p.W625S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A185-06 1 176525945 176525945 C T PAPPA2 Nonsense_Mutation p.Q163* 0.88 TCGA-EE-A185-06 1 180006154 180006154 C G CEP350 Nonsense_Mutation p.S1347* 0.20 TCGA-EE-A185-06 1 185269600 185269600 G A IVNS1ABP Missense_Mutation p.P404L 0.90 deleterious(0.01) benign(0.262) TCGA-EE-A185-06 1 200818770 200818770 C T CAMSAP2 Missense_Mutation p.P958L 0.28 tolerated(0.11) benign(0.06) TCGA-EE-A185-06 1 200826532 200826532 C T CAMSAP2 Nonsense_Mutation p.Q1371* 0.30 TCGA-EE-A185-06 1 200826983 200826983 C A CAMSAP2 Silent p.I1411I 0.32 TCGA-EE-A185-06 1 200827235 200827235 C T CAMSAP2 3'UTR 0.26 TCGA-EE-A185-06 1 200827258 200827258 C A CAMSAP2 3'UTR 0.27 TCGA-EE-A185-06 1 212560296 212560296 C T TMEM206 Missense_Mutation p.E155K 0.27 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A185-06 1 216348806 216348806 G A USH2A Missense_Mutation p.P1472L 0.88 benign(0.15) TCGA-EE-A185-06 1 233091435 233091435 C T NTPCR Missense_Mutation p.S56F 0.96 deleterious(0.03) benign(0.098) TCGA-EE-A185-06 1 248004239 248004239 G A OR11L1 Silent p.F320F 0.96 TCGA-EE-A185-06 1 248652057 248652057 C G OR2T5 Missense_Mutation p.D56E 0.51 tolerated(0.1) benign(0.033) TCGA-EE-A185-06 1 248685544 248685544 C T OR2G6 Silent p.L199L 0.85 TCGA-EE-A185-06 1 25679448 25679448 G A TMEM50A Missense_Mutation p.G117E 0.95 tolerated(0.06) benign(0.098) TCGA-EE-A185-06 1 55277557 55277557 G A C1orf177 Missense_Mutation p.G191S 0.83 deleterious(0.02) possibly_damaging(0.586) TCGA-EE-A185-06 20 23545501 23545501 C T CST9L 3'UTR 0.38 TCGA-EE-A185-06 20 23545502 23545502 C T CST9L 3'UTR 0.38 TCGA-EE-A185-06 20 37653908 37653908 C T DHX35 Silent p.F569F 0.45 TCGA-EE-A185-06 20 47865097 47865097 C T ZNFX1 Silent p.R1488R 0.46 TCGA-EE-A185-06 20 57828183 57828183 G A ZNF831 Missense_Mutation p.R1393Q 0.41 tolerated(0.65) benign(0.03) TCGA-EE-A185-06 21 10996137 10996137 T A TPTE Intron 0.40 TCGA-EE-A185-06 21 11058201 11058201 G A BAGE2 RNA 0.11 TCGA-EE-A185-06 21 19704416 19704416 G A TMPRSS15 Missense_Mutation p.P547S 0.40 tolerated(0.22) possibly_damaging(0.547) TCGA-EE-A185-06 21 43913099 43913099 C T RSPH1 Missense_Mutation p.E49K 0.43 deleterious(0.05) possibly_damaging(0.766) TCGA-EE-A185-06 21 45953807 45953807 C T TSPEAR Splice_Site p.X102_splice 0.70 TCGA-EE-A185-06 21 46596439 46596439 G A ADARB1 Missense_Mutation p.E275K 0.49 deleterious(0) probably_damaging(0.985) TCGA-EE-A185-06 22 26688731 26688731 C T SEZ6L Nonsense_Mutation p.Q152* 0.48 TCGA-EE-A185-06 22 28146848 28146848 G A MN1 3'UTR 0.59 TCGA-EE-A185-06 22 32797884 32797884 A G RTCB Missense_Mutation p.V116A 0.50 deleterious(0) probably_damaging(0.951) TCGA-EE-A185-06 22 42606385 42606385 G T TCF20 Missense_Mutation p.L1643I 0.36 benign(0.008) TCGA-EE-A185-06 22 42607026 42607026 G A TCF20 Missense_Mutation p.P1429L 0.51 benign(0.014) TCGA-EE-A185-06 22 46654143 46654143 C T PKDREJ Missense_Mutation p.E1693K 0.46 tolerated(0.08) possibly_damaging(0.467) TCGA-EE-A185-06 2 105858805 105858805 G A GPR45 Missense_Mutation p.G164R 0.43 deleterious(0.05) benign(0.315) TCGA-EE-A185-06 2 109527452 109527452 G A EDAR Silent p.I202I 0.56 TCGA-EE-A185-06 2 113832866 113832866 C T IL1F10 Silent p.P128P 0.36 TCGA-EE-A185-06 2 119750702 119750702 G A MARCO Missense_Mutation p.E419K 0.53 tolerated(0.36) unknown(0) TCGA-EE-A185-06 2 138421106 138421106 G A THSD7B Missense_Mutation p.D1541N 0.23 tolerated(0.09) unknown(0) TCGA-EE-A185-06 2 138724683 138724683 T G HNMT Intron 0.51 TCGA-EE-A185-06 2 148695749 148695749 G A ORC4 Missense_Mutation p.S363F 0.38 deleterious(0.01) benign(0.418) TCGA-EE-A185-06 2 150327209 150327209 T C LYPD6 Missense_Mutation p.C121R 0.32 deleterious(0) probably_damaging(0.943) TCGA-EE-A185-06 2 167060517 167060517 G A SCN9A Silent p.F1563F 0.52 TCGA-EE-A185-06 2 167322436 167322436 G A SCN7A Silent p.I242I 0.46 TCGA-EE-A185-06 2 168108159 168108159 C T XIRP2 Silent p.F3419F 0.38 TCGA-EE-A185-06 2 179469027 179469027 C T TTN Nonsense_Mutation p.W18129* 0.35 TCGA-EE-A185-06 2 18765902 18765902 G A NT5C1B Missense_Mutation p.R261C 0.57 deleterious_low_confidence(0.02) possibly_damaging(0.586) TCGA-EE-A185-06 2 192701344 192701344 C T SDPR Missense_Mutation p.E195K 0.41 deleterious(0.04) benign(0.406) TCGA-EE-A185-06 2 207173805 207173805 A T ZDBF2 Missense_Mutation p.K1518I 0.34 deleterious(0.02) possibly_damaging(0.703) TCGA-EE-A185-06 2 217340128 217340128 C T SMARCAL1 Missense_Mutation p.S794F 0.48 deleterious(0) probably_damaging(0.958) TCGA-EE-A185-06 2 220502373 220502373 G A SLC4A3 Missense_Mutation p.G896D 0.39 tolerated(0.4) benign(0) TCGA-EE-A185-06 2 226447476 226447476 C T NYAP2 Missense_Mutation p.P448L 0.37 deleterious(0.03) probably_damaging(1) TCGA-EE-A185-06 2 227662451 227662451 G A IRS1 Missense_Mutation p.T335I 0.48 deleterious(0) probably_damaging(0.991) TCGA-EE-A185-06 2 231150502 231150502 G A SP140 Missense_Mutation p.E534K 0.40 tolerated(0.55) benign(0.119) TCGA-EE-A185-06 2 31133721 31133721 C T GALNT14 3'UTR 0.33 TCGA-EE-A185-06 2 37873499 37873499 A G CDC42EP3 Missense_Mutation p.F78L 0.53 tolerated(0.18) benign(0.001) TCGA-EE-A185-06 2 68274371 68274371 G C C1D Silent p.S24S 0.33 TCGA-EE-A185-06 2 95488775 95488775 C T ANKRD20A8P RNA 0.35 TCGA-EE-A185-06 3 100174679 100174679 C T LNP1 Missense_Mutation p.S149F 0.58 deleterious(0) possibly_damaging(0.768) TCGA-EE-A185-06 3 11300800 11300800 A G HRH1 Missense_Mutation p.Q26R 0.43 tolerated(0.16) benign(0.016) TCGA-EE-A185-06 3 12859143 12859143 C T CAND2 Silent p.I904I 0.46 TCGA-EE-A185-06 3 129152700 129152700 C T MBD4 Silent p.R468R 0.31 TCGA-EE-A185-06 3 13538321 13538321 C T HDAC11 Missense_Mutation p.P113L 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A185-06 3 138181033 138181033 C T ESYT3 Silent p.R300R 0.41 TCGA-EE-A185-06 3 150384710 150384710 G A FAM194A Missense_Mutation p.P531L 0.38 deleterious(0) possibly_damaging(0.528) TCGA-EE-A185-06 3 151535168 151535168 G A AADAC Silent p.E51E 0.57 TCGA-EE-A185-06 3 155215191 155215191 C T PLCH1 Silent p.R592R 0.39 TCGA-EE-A185-06 3 164733000 164733000 C T SI Missense_Mutation p.E1304K 0.43 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A185-06 3 183516739 183516739 C T YEATS2 Missense_Mutation p.P1096L 0.40 tolerated(0.21) benign(0.002) TCGA-EE-A185-06 3 183773996 183773996 C T HTR3C Missense_Mutation p.P104L 0.42 deleterious(0) possibly_damaging(0.729) TCGA-EE-A185-06 3 193201725 193201725 C T ATP13A4 Missense_Mutation p.A270T 0.36 tolerated(0.36) benign(0.009) TCGA-EE-A185-06 3 33194143 33194143 C T SUSD5 3'UTR 0.62 TCGA-EE-A185-06 3 33558658 33558658 G A CLASP2 Silent p.L1274L 0.45 TCGA-EE-A185-06 3 38348017 38348017 G A SLC22A14 Missense_Mutation p.R167Q 0.47 tolerated(0.13) possibly_damaging(0.69) TCGA-EE-A185-06 3 38760281 38760281 C T SCN10A Missense_Mutation p.V1182M 0.47 deleterious(0) possibly_damaging(0.771) TCGA-EE-A185-06 3 48602893 48602893 G C COL7A1 Missense_Mutation p.S2826C 0.47 probably_damaging(0.922) TCGA-EE-A185-06 3 49928866 49928866 C T MST1R Missense_Mutation p.G1167D 0.36 deleterious(0) probably_damaging(0.947) TCGA-EE-A185-06 3 50137972 50137972 C T RBM5 Silent p.S139S 0.48 TCGA-EE-A185-06 3 52238818 52238818 C T ALAS1 Silent p.F229F 0.53 TCGA-EE-A185-06 3 52366279 52366279 G A DNAH1 Silent p.T385T 0.57 TCGA-EE-A185-06 3 8977684 8977684 G A RAD18 Missense_Mutation p.R254C 0.55 deleterious(0) probably_damaging(0.953) TCGA-EE-A185-06 4 107845099 107845099 C T DKK2 3'UTR 0.38 TCGA-EE-A185-06 4 115997465 115997465 G A NDST4 Missense_Mutation p.S243F 0.48 tolerated(0.33) benign(0.084) TCGA-EE-A185-06 4 126373627 126373627 G A FAT4 Missense_Mutation p.R3819Q 0.53 possibly_damaging(0.796) TCGA-EE-A185-06 4 164393087 164393087 C T TKTL2 Silent p.G600G 0.32 TCGA-EE-A185-06 4 38829058 38829058 G A TLR6 Silent p.V679V 0.39 TCGA-EE-A185-06 4 437361 437361 G A ZNF721 Missense_Mutation p.H299Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A185-06 4 69417557 69417557 G A UGT2B17 Nonsense_Mutation p.Q360* 0.33 TCGA-EE-A185-06 4 69520828 69520828 G A UGT2B15 Nonsense_Mutation p.Q360* 0.06 TCGA-EE-A185-06 4 74350006 74350006 G A AFM Missense_Mutation p.E57K 0.43 deleterious(0.04) probably_damaging(0.913) TCGA-EE-A185-06 4 75937934 75937934 G A PARM1 Missense_Mutation p.G115R 0.33 tolerated(0.09) benign(0.17) TCGA-EE-A185-06 4 7726903 7726903 G A SORCS2 Silent p.L878L 0.33 TCGA-EE-A185-06 4 8602950 8602950 G A CPZ Silent p.E74E 0.45 TCGA-EE-A185-06 4 89390338 89390338 C T HERC5 Missense_Mutation p.P389S 0.32 tolerated(0.42) possibly_damaging(0.569) TCGA-EE-A185-06 4 94137897 94137897 C T GRID2 Silent p.N266N 0.42 TCGA-EE-A185-06 5 13769713 13769713 C T DNAH5 Missense_Mutation p.G3206E 0.83 probably_damaging(0.982) TCGA-EE-A185-06 5 140223197 140223197 C T PCDHA8 Missense_Mutation p.P764L 0.81 tolerated_low_confidence(0.1) benign(0.017) TCGA-EE-A185-06 5 140481402 140481402 C T PCDHB3 Missense_Mutation p.P390L 0.70 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-EE-A185-06 5 140530629 140530629 C T PCDHB6 Missense_Mutation p.S264L 0.89 tolerated(0.07) benign(0.034) TCGA-EE-A185-06 6 119301436 119301436 G A FAM184A Missense_Mutation p.T723M 0.89 deleterious(0.01) possibly_damaging(0.886) TCGA-EE-A185-06 6 159646676 159646676 G A FNDC1 Missense_Mutation p.E332K 0.89 deleterious(0) unknown(0) TCGA-EE-A185-06 6 2890499 2890499 C T SERPINB9 Missense_Mutation p.M343I 0.32 tolerated(0.3) benign(0.001) TCGA-EE-A185-06 6 31498710 31498710 G A DDX39B Intron 0.31 TCGA-EE-A185-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.22 tolerated_low_confidence(0.07) benign(0.108) TCGA-EE-A185-06 6 32087646 32087646 G A ATF6B Silent p.I307I 0.31 TCGA-EE-A185-06 6 70451759 70451759 G A LMBRD1 Missense_Mutation p.P162S 0.50 tolerated(0.09) benign(0.371) TCGA-EE-A185-06 6 71289239 71289239 G A C6orf57 Missense_Mutation p.D63N 0.56 deleterious(0.01) possibly_damaging(0.572) TCGA-EE-A185-06 6 84896291 84896291 G A KIAA1009 Missense_Mutation p.P387L 0.77 deleterious(0.03) benign(0.046) TCGA-EE-A185-06 7 100683508 100683508 C T MUC17 Silent p.T2937T 0.85 TCGA-EE-A185-06 7 123152121 123152121 G A IQUB Missense_Mutation p.P92S 0.44 tolerated_low_confidence(0.8) benign(0.004) TCGA-EE-A185-06 7 30880436 30880436 G A FAM188B Missense_Mutation p.E473K 0.41 tolerated(0.17) benign(0.156) TCGA-EE-A185-06 7 48312755 48312755 A T ABCA13 Missense_Mutation p.L1164F 0.22 benign(0.205) TCGA-EE-A185-06 7 76826009 76826009 C T FGL2 Missense_Mutation p.D303N 0.46 deleterious(0) benign(0.292) TCGA-EE-A185-06 7 83675699 83675699 C T SEMA3A Missense_Mutation p.R203Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A185-06 7 98547816 98547816 G A TRRAP Silent p.Q1748Q 0.84 TCGA-EE-A185-06 7 99955901 99955901 C T PILRB 5'UTR 0.87 TCGA-EE-A185-06 8 134488128 134488128 G A ST3GAL1 Missense_Mutation p.S47F 0.33 possibly_damaging(0.729) TCGA-EE-A185-06 8 24171079 24171079 G A ADAM28 Missense_Mutation p.A188T 0.53 tolerated(0.34) benign(0.231) TCGA-EE-A185-06 8 55541651 55541651 G A RP1 Missense_Mutation p.E1737K 0.40 tolerated(0.17) benign(0.105) TCGA-EE-A185-06 8 81897151 81897151 G A PAG1 Missense_Mutation p.L246F 0.41 tolerated(0.15) probably_damaging(0.982) TCGA-EE-A185-06 9 134165420 134165420 C T PPAPDC3 Silent p.D12D 0.32 TCGA-EE-A185-06 9 139912064 139912064 G A ABCA2 Silent p.S764S 1.00 TCGA-EE-A185-06 9 19126422 19126422 C A PLIN2 Translation_Start_Site p.M1? 0.76 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A185-06 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.84 TCGA-EE-A185-06 9 23692586 23692586 G A ELAVL2 Missense_Mutation p.S350F 1.00 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A185-06 9 32987831 32987831 G A APTX Missense_Mutation p.P65L 0.81 deleterious(0) probably_damaging(0.991) TCGA-EE-A185-06 9 35740240 35740240 T C GBA2 Missense_Mutation p.I417V 0.88 tolerated(0.55) benign(0.047) TCGA-EE-A185-06 9 37515909 37515909 G A FBXO10 Silent p.F896F 0.83 TCGA-EE-A185-06 9 77390934 77390934 G A TRPM6 Missense_Mutation p.R1090C 0.43 deleterious(0) possibly_damaging(0.841) TCGA-EE-A185-06 X 105193601 105193601 T A NRK Missense_Mutation p.I1464N 0.82 deleterious(0) probably_damaging(0.944) TCGA-EE-A185-06 X 107430341 107430341 G A COL4A6 Missense_Mutation p.L647F 0.82 probably_damaging(0.995) TCGA-EE-A185-06 X 107430342 107430342 G A COL4A6 Silent p.G646G 0.82 TCGA-EE-A185-06 X 125299290 125299290 G A DCAF12L2 Silent p.T206T 0.84 TCGA-EE-A185-06 X 140984543 140984543 G A MAGEC3 Intron 0.83 TCGA-EE-A185-06 X 151376545 151376545 C T GABRA3 Missense_Mutation p.D236N 0.90 deleterious(0.03) possibly_damaging(0.891) TCGA-EE-A185-06 X 29301163 29301163 A C IL1RAPL1 Missense_Mutation p.Y64S 0.88 deleterious(0) probably_damaging(0.991) TCGA-EE-A185-06 X 36162701 36162701 G A CHDC2 Silent p.K428K 0.76 TCGA-EE-A20B-06 10 115531737 115531737 G A PLEKHS1 Missense_Mutation p.M181I 0.46 tolerated(0.62) benign(0.006) TCGA-EE-A20B-06 10 118225585 118225585 A G PNLIPRP3 Missense_Mutation p.N278D 0.51 deleterious(0.01) possibly_damaging(0.466) TCGA-EE-A20B-06 10 119014796 119014796 C T SLC18A2 Missense_Mutation p.P237S 0.48 deleterious(0.01) possibly_damaging(0.47) TCGA-EE-A20B-06 10 119014797 119014797 C T SLC18A2 Missense_Mutation p.P237L 0.47 deleterious(0.01) benign(0.019) TCGA-EE-A20B-06 10 7786237 7786237 A G ITIH2 Missense_Mutation p.N801S 0.61 tolerated(0.05) benign(0.009) TCGA-EE-A20B-06 10 90435346 90435346 C T LIPF Missense_Mutation p.R284C 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A20B-06 10 96540287 96540287 C T CYP2C19 Silent p.G171G 0.55 TCGA-EE-A20B-06 11 106681192 106681192 T G GUCY1A2 Missense_Mutation p.K407Q 0.23 deleterious(0) probably_damaging(0.991) TCGA-EE-A20B-06 11 113076293 113076293 G A NCAM1 Missense_Mutation p.G191E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20B-06 11 118133342 118133342 G A MPZL2 Missense_Mutation p.P83S 0.27 deleterious(0.04) probably_damaging(0.97) TCGA-EE-A20B-06 11 120008047 120008047 C T TRIM29 Silent p.T231T 0.36 TCGA-EE-A20B-06 11 124294729 124294729 G A OR8B4 Silent p.I13I 0.11 TCGA-EE-A20B-06 11 1471968 1471968 A G BRSK2 Missense_Mutation p.N526S 0.22 tolerated(0.11) benign(0.068) TCGA-EE-A20B-06 11 19077323 19077323 G A MRGPRX2 Silent p.I209I 0.29 TCGA-EE-A20B-06 11 55861168 55861168 C T OR8I2 Missense_Mutation p.P129S 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A20B-06 11 55861169 55861169 C T OR8I2 Missense_Mutation p.P129L 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20B-06 11 58919259 58919259 C T FAM111A Silent p.L40L 0.26 TCGA-EE-A20B-06 11 65984200 65984200 T G PACS1 Missense_Mutation p.V311G 0.29 tolerated(0.3) benign(0.4) TCGA-EE-A20B-06 11 66393035 66393036 - T RBM14 Frame_Shift_Ins p.Q563Hfs*15 0.31 TCGA-EE-A20B-06 11 7817644 7817644 G T OR5P2 Missense_Mutation p.N282K 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A20B-06 11 8494754 8494754 C T STK33 Missense_Mutation p.G99R 0.23 tolerated(0.37) benign(0.062) TCGA-EE-A20B-06 12 105538630 105538630 C T KIAA1033 Missense_Mutation p.P772S 0.23 deleterious(0) benign(0.251) TCGA-EE-A20B-06 12 110960065 110960065 G A RAD9B Missense_Mutation p.R325K 0.47 tolerated(0.41) benign(0.125) TCGA-EE-A20B-06 12 11420585 11420585 G A PRB3 Missense_Mutation p.R200C 0.14 deleterious(0.01) unknown(0) TCGA-EE-A20B-06 12 126135452 126135452 G A TMEM132B Missense_Mutation p.D618N 0.22 tolerated(0.16) benign(0.014) TCGA-EE-A20B-06 12 32949190 32949190 G C PKP2 Missense_Mutation p.T781R 0.25 deleterious(0.01) benign(0.365) TCGA-EE-A20B-06 12 40114730 40114730 A G C12orf40 Missense_Mutation p.K546E 0.31 tolerated(0.19) benign(0.081) TCGA-EE-A20B-06 12 53460414 53460414 C T SPRYD3 Missense_Mutation p.G322R 0.44 deleterious(0) probably_damaging(0.953) TCGA-EE-A20B-06 12 55886839 55886839 C T OR6C68 Silent p.F226F 0.33 TCGA-EE-A20B-06 12 75685567 75685567 G A CAPS2 Silent p.I418I 0.52 TCGA-EE-A20B-06 12 83290317 83290317 A G TMTC2 Missense_Mutation p.T459A 0.54 tolerated(0.57) benign(0.003) TCGA-EE-A20B-06 13 101833295 101833295 G A NALCN Intron 0.67 TCGA-EE-A20B-06 14 20528879 20528879 C T OR4L1 Missense_Mutation p.P226S 0.36 deleterious(0.04) benign(0.044) TCGA-EE-A20B-06 14 20853249 20853249 C T TEP1 Missense_Mutation p.G1001E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A20B-06 14 20853250 20853250 C T TEP1 Missense_Mutation p.G1001R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A20B-06 14 21873466 21873466 G A CHD8 Missense_Mutation p.S1070F 0.35 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A20B-06 14 64465735 64465735 C T SYNE2 Nonsense_Mutation p.Q1153* 0.13 TCGA-EE-A20B-06 14 70515650 70515650 G A SLC8A3 Silent p.P747P 0.20 TCGA-EE-A20B-06 14 88904536 88904536 C T SPATA7 Missense_Mutation p.H524Y 0.18 tolerated(0.15) benign(0) TCGA-EE-A20B-06 14 94707091 94707091 C T PPP4R4 Missense_Mutation p.S312F 0.13 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A20B-06 15 43815653 43815653 T C MAP1A Missense_Mutation p.M661T 0.35 probably_damaging(0.988) TCGA-EE-A20B-06 15 48704822 48704822 G A FBN1 Missense_Mutation p.P2724S 0.32 possibly_damaging(0.783) TCGA-EE-A20B-06 15 49800546 49800546 C T FAM227B Splice_Site p.X292_splice 0.24 TCGA-EE-A20B-06 15 51221267 51221267 C T AP4E1 Nonsense_Mutation p.Q202* 0.33 TCGA-EE-A20B-06 15 59516941 59516941 C T MYO1E Missense_Mutation p.G242S 0.26 deleterious(0.04) benign(0.284) TCGA-EE-A20B-06 15 59752222 59752222 C T FAM81A Silent p.I37I 0.28 TCGA-EE-A20B-06 15 60907219 60907219 T C RORA Intron 0.30 TCGA-EE-A20B-06 15 68643096 68643096 C T ITGA11 Missense_Mutation p.G307R 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A20B-06 15 75013590 75013590 G A CYP1A1 Silent p.I372I 0.24 TCGA-EE-A20B-06 16 108267 108267 C T RHBDF1 3'UTR 0.33 TCGA-EE-A20B-06 16 19047031 19047031 G A TMC7 Silent p.R297R 0.30 TCGA-EE-A20B-06 16 67293840 67293840 G A SLC9A5 Silent p.P611P 0.23 TCGA-EE-A20B-06 16 70942194 70942194 C T HYDIN Missense_Mutation p.R2786Q 0.35 possibly_damaging(0.776) TCGA-EE-A20B-06 16 71007919 71007919 A G HYDIN Missense_Mutation p.V1681A 0.34 benign(0.099) TCGA-EE-A20B-06 16 71019196 71019196 G A HYDIN Silent p.I1408I 0.25 TCGA-EE-A20B-06 16 71686892 71686892 G A PHLPP2 Missense_Mutation p.S873F 0.45 deleterious(0) possibly_damaging(0.789) TCGA-EE-A20B-06 16 71894328 71894328 G A ZNF821 Missense_Mutation p.R278C 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A20B-06 17 18077192 18077192 G A MYO15A Missense_Mutation p.G3483E 0.37 unknown(0) TCGA-EE-A20B-06 17 3195591 3195591 G A OR3A1 Missense_Mutation p.P96S 0.31 tolerated(1) benign(0.011) TCGA-EE-A20B-06 17 3831527 3831527 G A ATP2A3 Silent p.A1025A 0.38 TCGA-EE-A20B-06 17 38711075 38711075 G T CCR7 Silent p.L352L 0.26 TCGA-EE-A20B-06 17 40858189 40858189 G A EZH1 Missense_Mutation p.P559S 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A20B-06 17 41061429 41061429 C T G6PC Silent p.L186L 0.30 TCGA-EE-A20B-06 17 4356416 4356416 C T SPNS3 Silent p.L343L 0.32 TCGA-EE-A20B-06 17 61890605 61890605 C T DDX42 Missense_Mutation p.P565S 0.33 tolerated(0.09) probably_damaging(0.981) TCGA-EE-A20B-06 17 7490807 7490807 G C MPDU1 Missense_Mutation p.A228P 0.39 deleterious(0.04) possibly_damaging(0.571) TCGA-EE-A20B-06 17 76089158 76089158 C T TNRC6C Missense_Mutation p.S1369F 0.40 deleterious(0) possibly_damaging(0.546) TCGA-EE-A20B-06 17 77078262 77078262 C T ENGASE Intron 0.25 TCGA-EE-A20B-06 18 14511986 14511986 G A POTEC Missense_Mutation p.L514F 0.24 tolerated_low_confidence(0.7) probably_damaging(0.927) TCGA-EE-A20B-06 18 28710554 28710554 C T DSC1 Missense_Mutation p.E870K 0.29 deleterious(0) possibly_damaging(0.656) TCGA-EE-A20B-06 18 28956873 28956873 G A DSG4 5'UTR 0.24 TCGA-EE-A20B-06 18 30093416 30093416 A G WBP11P1 RNA 0.32 TCGA-EE-A20B-06 18 43247899 43247899 C T SLC14A2 Missense_Mutation p.L607F 0.27 tolerated(0.25) benign(0.137) TCGA-EE-A20B-06 18 67345018 67345018 G A DOK6 Missense_Mutation p.G113E 0.19 tolerated(0.08) benign(0.178) TCGA-EE-A20B-06 18 72343420 72343420 A T ZNF407 Missense_Mutation p.T149S 0.24 tolerated(0.7) benign(0.004) TCGA-EE-A20B-06 19 10088149 10088149 C T COL5A3 Splice_Site p.X1043_splice 0.40 TCGA-EE-A20B-06 19 10251856 10251856 C A DNMT1 Missense_Mutation p.A1107S 0.31 tolerated(0.24) benign(0.03) TCGA-EE-A20B-06 19 10418986 10418986 C T ZGLP1 Silent p.Q124Q 0.25 TCGA-EE-A20B-06 19 11289247 11289247 C T KANK2 Missense_Mutation p.E467K 0.27 tolerated(0.1) benign(0.115) TCGA-EE-A20B-06 19 12059734 12059734 A G ZNF700 Missense_Mutation p.S299G 0.35 deleterious(0.02) possibly_damaging(0.566) TCGA-EE-A20B-06 19 15535023 15535023 G A WIZ Silent p.F732F 0.41 TCGA-EE-A20B-06 19 16268098 16268098 G A HSH2D 3'Flank 0.34 TCGA-EE-A20B-06 19 16337294 16337294 C T AP1M1 Silent p.F215F 0.40 TCGA-EE-A20B-06 19 35500853 35500853 C T GRAMD1A Missense_Mutation p.P101L 0.33 deleterious(0) probably_damaging(0.973) TCGA-EE-A20B-06 19 45026939 45026939 C T CEACAM20 Intron 0.37 TCGA-EE-A20B-06 19 51919318 51919318 C T SIGLEC10 Silent p.L286L 0.26 TCGA-EE-A20B-06 19 51920903 51920903 G A SIGLEC10 5'UTR 0.46 TCGA-EE-A20B-06 19 52033983 52033983 G A SIGLEC6 Missense_Mutation p.P220S 0.37 deleterious(0) probably_damaging(0.947) TCGA-EE-A20B-06 19 53959643 53959643 C T ZNF761 RNA 0.33 TCGA-EE-A20B-06 19 54666489 54666489 G T TMC4 Silent p.V479V 0.12 TCGA-EE-A20B-06 19 9089201 9089201 G A MUC16 Missense_Mutation p.P872S 0.26 unknown(0) TCGA-EE-A20B-06 19 9090527 9090527 C T MUC16 Missense_Mutation p.E430K 0.36 unknown(0) TCGA-EE-A20B-06 1 102302438 102302438 T G OLFM3 Missense_Mutation p.E71D 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A20B-06 1 109380200 109380200 G A AKNAD1 Missense_Mutation p.A503V 0.37 tolerated(0.19) benign(0.063) TCGA-EE-A20B-06 1 11300494 11300494 G A MTOR Missense_Mutation p.P551L 0.41 deleterious(0) possibly_damaging(0.738) TCGA-EE-A20B-06 1 118548050 118548050 C T SPAG17 Missense_Mutation p.G1588E 0.33 deleterious(0.01) probably_damaging(1) TCGA-EE-A20B-06 1 12856060 12856060 C T PRAMEF1 Missense_Mutation p.P447L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20B-06 1 149885219 149885219 G A SV2A Silent p.F58F 0.56 TCGA-EE-A20B-06 1 151824911 151824911 T C THEM5 Missense_Mutation p.T50A 0.52 tolerated(0.29) benign(0.254) TCGA-EE-A20B-06 1 153410701 153410701 C T S100A7L2 Silent p.L46L 0.24 TCGA-EE-A20B-06 1 153921594 153921594 C T CRTC2 Silent p.G557G 0.50 TCGA-EE-A20B-06 1 156233338 156233338 C T SMG5 Missense_Mutation p.E627K 0.43 tolerated(0.17) probably_damaging(0.957) TCGA-EE-A20B-06 1 156233339 156233339 C T SMG5 Silent p.S626S 0.42 TCGA-EE-A20B-06 1 158450547 158450547 G T OR10R2 Missense_Mutation p.V294L 0.32 tolerated(0.12) benign(0.308) TCGA-EE-A20B-06 1 158607904 158607904 G T SPTA1 Missense_Mutation p.A1703D 0.24 tolerated(0.08) possibly_damaging(0.716) TCGA-EE-A20B-06 1 161068775 161068775 G A KLHDC9 Silent p.R150R 0.45 TCGA-EE-A20B-06 1 183209476 183209476 T C LAMC2 Missense_Mutation p.V1093A 0.16 tolerated(0.88) benign(0.002) TCGA-EE-A20B-06 1 18661458 18661458 G A IGSF21 Silent p.R126R 0.27 TCGA-EE-A20B-06 1 201028413 201028413 C T CACNA1S Silent p.S1143S 0.09 TCGA-EE-A20B-06 1 201063099 201063099 C T CACNA1S Missense_Mutation p.M103I 0.28 deleterious(0.03) benign(0.02) TCGA-EE-A20B-06 1 217947741 217947741 G A SPATA17 Silent p.K195K 0.26 TCGA-EE-A20B-06 1 220805570 220805570 G A MARK1 Missense_Mutation p.R346Q 0.53 tolerated(0.15) benign(0.008) TCGA-EE-A20B-06 1 223987610 223987610 C T TP53BP2 Silent p.R492R 0.46 TCGA-EE-A20B-06 1 223987611 223987611 C T TP53BP2 Missense_Mutation p.R492Q 0.46 tolerated(0.11) probably_damaging(0.996) TCGA-EE-A20B-06 1 228334611 228334611 G A GUK1 Missense_Mutation p.E96K 0.24 tolerated(0.07) benign(0.255) TCGA-EE-A20B-06 1 22903209 22903209 G A EPHA8 Missense_Mutation p.G220E 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A20B-06 1 235647706 235647706 A G B3GALNT2 Missense_Mutation p.F163L 0.30 tolerated(0.28) benign(0.002) TCGA-EE-A20B-06 1 237948051 237948051 G A RYR2 Missense_Mutation p.E4347K 0.50 benign(0.265) TCGA-EE-A20B-06 1 241761296 241761296 G A OPN3 Missense_Mutation p.R233C 0.21 deleterious(0) probably_damaging(0.973) TCGA-EE-A20B-06 1 247752125 247752125 G A OR2G2 Missense_Mutation p.G155E 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A20B-06 1 247902852 247902852 G A OR14K1 Missense_Mutation p.M312I 0.26 tolerated(0.75) benign(0.002) TCGA-EE-A20B-06 1 248756222 248756222 G A OR2T10 Missense_Mutation p.P283L 0.30 deleterious(0) probably_damaging(0.992) TCGA-EE-A20B-06 1 26691379 26691379 G A ZNF683 Missense_Mutation p.L220F 0.28 tolerated(1) benign(0.006) TCGA-EE-A20B-06 1 29647298 29647298 C T PTPRU Silent p.I1273I 0.54 TCGA-EE-A20B-06 1 33985221 33985221 C T CSMD2 Missense_Mutation p.R3454Q 0.32 tolerated(1) benign(0.02) TCGA-EE-A20B-06 1 36755032 36755032 G A THRAP3 Nonsense_Mutation p.W471* 0.26 TCGA-EE-A20B-06 1 46977741 46977741 C T DMBX1 Missense_Mutation p.P237S 0.13 tolerated_low_confidence(0.25) benign(0.009) TCGA-EE-A20B-06 1 47366031 47366031 G A CYP4Z2P RNA 0.42 TCGA-EE-A20B-06 1 70652993 70652993 G A LRRC40 Missense_Mutation p.P121L 0.33 deleterious(0.02) possibly_damaging(0.658) TCGA-EE-A20B-06 20 1532376 1532376 C T SIRPD Missense_Mutation p.E128K 0.51 deleterious(0.03) possibly_damaging(0.742) TCGA-EE-A20B-06 20 23666468 23666468 G A CST4 3'UTR 0.60 TCGA-EE-A20B-06 20 3653578 3653578 G A ADAM33 Intron 0.40 TCGA-EE-A20B-06 20 44577618 44577618 C T ZNF335 Missense_Mutation p.D1335N 0.12 deleterious(0) benign(0.187) TCGA-EE-A20B-06 20 9453991 9453991 C T PLCB4 Silent p.F1146F 0.68 TCGA-EE-A20B-06 20 9561212 9561212 G A PAK7 Silent p.S190S 0.65 TCGA-EE-A20B-06 22 37334036 37334036 C T CSF2RB Missense_Mutation p.S729F 0.18 tolerated(0.09) benign(0.111) TCGA-EE-A20B-06 22 38121191 38121191 G A TRIOBP Silent p.E876E 0.18 TCGA-EE-A20B-06 22 41173357 41173357 G A SLC25A17 Missense_Mutation p.R158C 0.49 tolerated(0.06) benign(0.117) TCGA-EE-A20B-06 22 45789546 45789546 C T SMC1B Missense_Mutation p.E505K 0.47 deleterious(0) possibly_damaging(0.783) TCGA-EE-A20B-06 2 107007391 107007391 G A PLGLA RNA 0.49 TCGA-EE-A20B-06 2 119752007 119752007 G A MARCO Missense_Mutation p.E492K 0.12 deleterious(0) unknown(0) TCGA-EE-A20B-06 2 138375985 138375985 G A THSD7B Missense_Mutation p.E1200K 0.16 deleterious(0.03) unknown(0) TCGA-EE-A20B-06 2 163374610 163374610 G A KCNH7 Silent p.S174S 0.38 TCGA-EE-A20B-06 2 171323156 171323156 G A MYO3B Silent p.L983L 0.19 TCGA-EE-A20B-06 2 171323157 171323157 G C MYO3B Missense_Mutation p.E984Q 0.19 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A20B-06 2 196786854 196786854 G A DNAH7 Missense_Mutation p.S1298F 0.36 deleterious(0) possibly_damaging(0.707) TCGA-EE-A20B-06 2 220334052 220334052 C T SPEG Silent p.F1222F 0.29 TCGA-EE-A20B-06 2 227661962 227661962 G A IRS1 Missense_Mutation p.T498I 0.27 tolerated(0.18) benign(0.03) TCGA-EE-A20B-06 2 228884208 228884208 C T SPHKAP Silent p.Q454Q 0.27 TCGA-EE-A20B-06 2 238270418 238270418 C T COL6A3 Silent p.R2040R 0.29 TCGA-EE-A20B-06 2 49189984 49189984 G A FSHR Missense_Mutation p.S659L 0.16 tolerated(0.65) benign(0.018) TCGA-EE-A20B-06 2 60688755 60688755 G A BCL11A Missense_Mutation p.S431L 0.40 deleterious(0.02) benign(0.32) TCGA-EE-A20B-06 3 101059023 101059023 C T SENP7 Missense_Mutation p.G758E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A20B-06 3 111604089 111604089 G A PHLDB2 Missense_Mutation p.E389K 0.31 deleterious(0.03) benign(0.06) TCGA-EE-A20B-06 3 11356815 11356815 C T ATG7 Intron 0.26 TCGA-EE-A20B-06 3 11356816 11356816 A T ATG7 Splice_Site p.X177_splice 0.25 TCGA-EE-A20B-06 3 120401046 120401046 C T HGD 5'UTR 0.34 TCGA-EE-A20B-06 3 13916511 13916511 G A WNT7A Silent p.F77F 0.38 TCGA-EE-A20B-06 3 150264576 150264576 C T EIF2A 5'UTR 0.32 TCGA-EE-A20B-06 3 168833340 168833340 C T MECOM Missense_Mutation p.D651N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20B-06 3 170819380 170819380 C T TNIK Missense_Mutation p.E817K 0.42 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A20B-06 3 183471995 183471995 T C YEATS2 Missense_Mutation p.M411T 0.32 tolerated_low_confidence(0.32) benign(0) TCGA-EE-A20B-06 3 195959976 195959976 C A SLC51A Missense_Mutation p.T310N 0.34 deleterious(0) possibly_damaging(0.649) TCGA-EE-A20B-06 3 31725457 31725457 G A OSBPL10 Silent p.A465A 0.31 TCGA-EE-A20B-06 3 35763118 35763118 G A ARPP21 Silent p.G305G 0.31 TCGA-EE-A20B-06 3 38889226 38889226 C T SCN11A Missense_Mutation p.M1445I 0.27 tolerated(0.29) benign(0.006) TCGA-EE-A20B-06 3 42733374 42733374 G A KLHL40 Silent p.R585R 0.40 TCGA-EE-A20B-06 3 42794129 42794129 A T CCDC13 Missense_Mutation p.S151T 0.27 tolerated(0.42) probably_damaging(0.974) TCGA-EE-A20B-06 3 50334588 50334588 G A NAT6 Missense_Mutation p.L125F 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A20B-06 3 50404317 50404317 G A CACNA2D2 Missense_Mutation p.A852V 0.38 tolerated(1) benign(0.015) TCGA-EE-A20B-06 3 52835084 52835084 C T ITIH3 Silent p.F435F 0.38 TCGA-EE-A20B-06 3 69169211 69169211 C T LMOD3 Missense_Mutation p.E99K 0.24 tolerated(0.48) benign(0.009) TCGA-EE-A20B-06 4 106157388 106157388 C T TET2 Silent p.P763P 0.31 TCGA-EE-A20B-06 4 109784498 109784498 C T COL25A1 Missense_Mutation p.E377K 0.52 tolerated(0.08) possibly_damaging(0.848) TCGA-EE-A20B-06 4 146823350 146823350 G A ZNF827 Missense_Mutation p.P354L 0.09 deleterious(0.01) benign(0.05) TCGA-EE-A20B-06 4 152203360 152203360 G A PRSS48 Silent p.R92R 0.49 TCGA-EE-A20B-06 4 158254053 158254053 C T GRIA2 Missense_Mutation p.S322F 0.46 tolerated(0.57) possibly_damaging(0.684) TCGA-EE-A20B-06 4 158254054 158254054 C T GRIA2 Silent p.S322S 0.44 TCGA-EE-A20B-06 4 20525429 20525429 C T SLIT2 Nonsense_Mutation p.Q393* 0.24 TCGA-EE-A20B-06 4 70361563 70361563 G A UGT2B4 Missense_Mutation p.T6I 0.43 tolerated(1) benign(0.001) TCGA-EE-A20B-06 5 1243736 1243736 C T SLC6A18 Missense_Mutation p.P400S 0.36 deleterious(0.05) benign(0.081) TCGA-EE-A20B-06 5 135551958 135551958 G A TRPC7 Silent p.I783I 0.35 TCGA-EE-A20B-06 5 13753547 13753547 G A DNAH5 Missense_Mutation p.P3556L 0.30 possibly_damaging(0.713) TCGA-EE-A20B-06 5 137906798 137906798 G A HSPA9 Silent p.T87T 0.39 TCGA-EE-A20B-06 5 140718682 140718682 C T PCDHGA2 Silent p.I48I 0.34 TCGA-EE-A20B-06 5 140752003 140752003 C T PCDHGB3 Missense_Mutation p.P681L 0.30 tolerated(0.06) benign(0.332) TCGA-EE-A20B-06 5 158601155 158601155 T C RNF145 Silent p.V241V 0.32 TCGA-EE-A20B-06 5 171765958 171765958 A G SH3PXD2B Silent p.D717D 0.30 TCGA-EE-A20B-06 5 23526666 23526666 G A PRDM9 Missense_Mutation p.G490E 0.44 tolerated(0.07) benign(0.002) TCGA-EE-A20B-06 5 26902839 26902839 C T CDH9 Splice_Site p.X334_splice 0.23 TCGA-EE-A20B-06 5 26902840 26902840 T A CDH9 Splice_Site p.X334_splice 0.23 TCGA-EE-A20B-06 5 54420689 54420689 G A CDC20B Missense_Mutation p.P386L 0.36 tolerated(0.12) benign(0.009) TCGA-EE-A20B-06 5 89953923 89953923 T C GPR98 Missense_Mutation p.I1527T 0.31 benign(0.011) TCGA-EE-A20B-06 6 136552384 136552384 G A MTFR2 3'UTR 0.83 TCGA-EE-A20B-06 6 149901054 149901054 G A GINM1 Missense_Mutation p.E172K 0.58 tolerated(0.41) probably_damaging(0.968) TCGA-EE-A20B-06 6 161518202 161518202 G A MAP3K4 Missense_Mutation p.G1173E 0.57 tolerated(0.11) possibly_damaging(0.694) TCGA-EE-A20B-06 6 17764704 17764704 G A KIF13A Silent p.I1685I 0.27 TCGA-EE-A20B-06 6 31498710 31498710 G A DDX39B Intron 0.28 TCGA-EE-A20B-06 6 401457 401457 A C IRF4 Missense_Mutation p.E260A 0.26 tolerated(0.36) possibly_damaging(0.664) TCGA-EE-A20B-06 7 100087164 100087164 A T NYAP1 Missense_Mutation p.H607L 0.32 deleterious(0.01) possibly_damaging(0.699) TCGA-EE-A20B-06 7 100252710 100252710 C T ACTL6B Missense_Mutation p.D101N 0.31 tolerated(0.13) benign(0.062) TCGA-EE-A20B-06 7 117171039 117171039 G A CFTR Silent p.A120A 0.35 TCGA-EE-A20B-06 7 134896313 134896313 G A WDR91 5'Flank 0.33 TCGA-EE-A20B-06 7 135080575 135080575 G A CNOT4 Missense_Mutation p.P314S 0.36 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A20B-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.82 deleterious(0) probably_damaging(0.967) TCGA-EE-A20B-06 7 142609705 142609705 C T TRPV5 Missense_Mutation p.M577I 0.77 deleterious(0) probably_damaging(0.999) TCGA-EE-A20B-06 7 14613891 14613891 C T DGKB Silent p.E573E 0.29 TCGA-EE-A20B-06 7 18706067 18706067 G A HDAC9 Missense_Mutation p.E567K 0.35 tolerated(0.35) possibly_damaging(0.561) TCGA-EE-A20B-06 7 20725384 20725384 A C ABCB5 Silent p.S645S 0.48 TCGA-EE-A20B-06 7 33140157 33140157 G A RP9 Missense_Mutation p.P57S 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A20B-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.45 TCGA-EE-A20B-06 7 73534932 73534932 G A LIMK1 Silent p.K529K 0.25 TCGA-EE-A20B-06 7 92732795 92732795 G A SAMD9 Silent p.I872I 0.32 TCGA-EE-A20B-06 7 94050349 94050349 G A COL1A2 Missense_Mutation p.G775E 0.34 unknown(0) TCGA-EE-A20B-06 7 99711836 99711836 G A TAF6 Silent p.S36S 0.36 TCGA-EE-A20B-06 8 11189670 11189670 G A SLC35G5 3'UTR 0.22 TCGA-EE-A20B-06 8 144812692 144812692 G C FAM83H Missense_Mutation p.P21A 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A20B-06 8 18729960 18729960 C T PSD3 Silent p.L138L 0.36 TCGA-EE-A20B-06 8 2048677 2048677 G A MYOM2 Missense_Mutation p.D818N 0.40 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A20B-06 8 2876166 2876166 G A CSMD1 Missense_Mutation p.S2621L 0.27 probably_damaging(0.996) TCGA-EE-A20B-06 8 28956730 28956730 G T KIF13B Missense_Mutation p.S1415Y 0.37 tolerated(0.16) benign(0.221) TCGA-EE-A20B-06 8 39535031 39535031 C T ADAM18 Missense_Mutation p.S536L 0.34 tolerated(0.21) benign(0.046) TCGA-EE-A20B-06 8 43147853 43147853 G A POTEA RNA 0.34 TCGA-EE-A20B-06 8 97157344 97157344 G A GDF6 Missense_Mutation p.P272L 0.31 tolerated(0.42) possibly_damaging(0.507) TCGA-EE-A20B-06 9 115804981 115804981 G A ZFP37 3'UTR 0.58 TCGA-EE-A20B-06 9 115804982 115804982 T A ZFP37 3'UTR 0.58 TCGA-EE-A20B-06 9 21971208 21971208 C A CDKN2A Splice_Site p.X51_splice 0.54 TCGA-EE-A20B-06 9 894120 894120 G A DMRT1 Silent p.G249G 0.68 TCGA-EE-A20B-06 9 90586095 90586095 G A CDK20 Silent p.V115V 0.73 TCGA-EE-A20B-06 9 93375806 93375806 C T DIRAS2 Missense_Mutation p.E102K 0.75 tolerated(0.13) benign(0.007) TCGA-EE-A20B-06 9 94486685 94486685 G A ROR2 Silent p.S697S 0.81 TCGA-EE-A20B-06 X 122754817 122754817 C T THOC2 Splice_Site p.X1406_splice 0.28 TCGA-EE-A20B-06 X 135428482 135428482 G A GPR112 Missense_Mutation p.E873K 0.43 deleterious(0.03) possibly_damaging(0.734) TCGA-EE-A20B-06 X 151128445 151128445 G A GABRE Missense_Mutation p.S217F 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A20B-06 X 153206981 153206981 G A RENBP Missense_Mutation p.H299Y 0.25 tolerated(0.15) benign(0.028) TCGA-EE-A20B-06 X 153580735 153580735 T C FLNA Missense_Mutation p.N2195D 0.27 tolerated(1) benign(0.001) TCGA-EE-A20B-06 X 153996843 153996843 C T DKC1 Intron 0.20 TCGA-EE-A20B-06 X 27999214 27999214 C T DCAF8L1 Missense_Mutation p.E80K 0.27 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A20B-06 X 31462694 31462694 A G DMD Silent p.N2996N 0.26 TCGA-EE-A20B-06 X 39923689 39923689 C T BCOR Silent p.R1134R 0.20 TCGA-EE-A20B-06 X 41204554 41204554 G A DDX3X Missense_Mutation p.A383T 0.17 deleterious(0) possibly_damaging(0.559) TCGA-EE-A20B-06 X 50341289 50341289 C T SHROOM4 Missense_Mutation p.D1397N 0.23 deleterious(0.04) benign(0.037) TCGA-EE-A20B-06 X 77245339 77245339 C T ATP7A Silent p.S407S 0.43 TCGA-EE-A20B-06 X 82763328 82763328 C G POU3F4 5'UTR 0.16 TCGA-EE-A20B-06 X 84634308 84634308 C T POF1B Missense_Mutation p.R51Q 0.42 deleterious_low_confidence(0.03) benign(0.063) TCGA-EE-A20B-06 X 92927823 92927823 C - NAP1L3 Frame_Shift_Del p.E161Nfs*28 0.13 TCGA-EE-A20C-06 10 101943537 101943537 G A ERLIN1 Silent p.F57F 0.49 TCGA-EE-A20C-06 10 102732633 102732633 C T SEMA4G 5'UTR 0.46 TCGA-EE-A20C-06 10 102738435 102738435 G A MRPL43 3'Flank 0.50 TCGA-EE-A20C-06 10 102746960 102746960 G A MRPL43 Intron 0.44 TCGA-EE-A20C-06 10 102748846 102748846 C T C10orf2 Silent p.A293A 0.42 TCGA-EE-A20C-06 10 103310563 103310563 C T BTRC Silent p.A588A 0.49 TCGA-EE-A20C-06 10 104836854 104836854 G A CNNM2 Missense_Mutation p.E849K 0.40 tolerated(0.06) possibly_damaging(0.579) TCGA-EE-A20C-06 10 105765698 105765698 C T SLK Missense_Mutation p.L837F 0.53 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 10 105800154 105800154 C T COL17A1 Missense_Mutation p.G906S 0.50 probably_damaging(0.987) TCGA-EE-A20C-06 10 105900683 105900683 C T WDR96 Missense_Mutation p.E1450K 0.38 deleterious(0.03) possibly_damaging(0.667) TCGA-EE-A20C-06 10 106916912 106916912 G A SORCS3 Missense_Mutation p.G500E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 10 106916913 106916913 G A SORCS3 Silent p.G500G 0.35 TCGA-EE-A20C-06 10 111667470 111667470 G A XPNPEP1 Silent p.I75I 0.39 TCGA-EE-A20C-06 10 115526199 115526199 G A PLEKHS1 Missense_Mutation p.E14K 0.38 tolerated(0.15) probably_damaging(0.995) TCGA-EE-A20C-06 10 115981144 115981144 G A TDRD1 Silent p.T933T 0.50 TCGA-EE-A20C-06 10 116048977 116048977 C T VWA2 Silent p.I617I 0.38 TCGA-EE-A20C-06 10 116055922 116055922 G A AFAP1L2 Intron 0.60 TCGA-EE-A20C-06 10 118236243 118236243 T C PNLIPRP3 Missense_Mutation p.F418L 0.53 deleterious(0.03) benign(0.38) TCGA-EE-A20C-06 10 118315535 118315535 A T PNLIP Missense_Mutation p.N279Y 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 10 119012938 119012938 G A SLC18A2 Missense_Mutation p.G165R 0.45 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 10 123274827 123274827 C T FGFR2 Missense_Mutation p.G365E 0.45 tolerated(1) benign(0.001) TCGA-EE-A20C-06 10 124345695 124345695 G A DMBT1 Missense_Mutation p.D527N 0.45 tolerated(0.12) unknown(0) TCGA-EE-A20C-06 10 124345823 124345823 C T DMBT1 Silent p.Y569Y 0.43 TCGA-EE-A20C-06 10 124345824 124345824 T C DMBT1 Silent p.L570L 0.43 TCGA-EE-A20C-06 10 124395546 124395546 C T DMBT1 Silent p.F2067F 0.34 TCGA-EE-A20C-06 10 124396734 124396734 C T DMBT1 Missense_Mutation p.S2154F 0.43 tolerated(0.22) possibly_damaging(0.879) TCGA-EE-A20C-06 10 126508016 126508016 A T FAM175B Missense_Mutation p.R88S 0.69 deleterious(0) possibly_damaging(0.53) TCGA-EE-A20C-06 10 126672076 126672076 C T ZRANB1 Missense_Mutation p.P576L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 10 127411683 127411683 G A EDRF1 Missense_Mutation p.D122N 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 10 134898381 134898381 C T GPR123 5'Flank 0.31 TCGA-EE-A20C-06 10 134915803 134915803 G A GPR123 Intron 0.64 TCGA-EE-A20C-06 10 134981803 134981803 G A KNDC1 Missense_Mutation p.G116E 0.39 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 10 135009173 135009173 G A KNDC1 Missense_Mutation p.V528M 0.62 deleterious(0.04) probably_damaging(0.915) TCGA-EE-A20C-06 10 135076467 135076467 G A ADAM8 3'UTR 0.30 TCGA-EE-A20C-06 10 135140382 135140382 C T CALY Silent p.R120R 0.23 TCGA-EE-A20C-06 10 135438886 135438886 G A FRG2B Missense_Mutation p.A185V 0.29 deleterious(0.01) benign(0.182) TCGA-EE-A20C-06 10 135440205 135440205 G A FRG2B Silent p.S14S 0.11 TCGA-EE-A20C-06 10 13658444 13658444 C T RP11-295P9.3 Missense_Mutation p.P157L 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 10 18134076 18134076 A T MRC1 Intron 0.46 TCGA-EE-A20C-06 10 21097533 21097533 G A NEBL Silent p.F889F 0.49 TCGA-EE-A20C-06 10 24909953 24909953 G A ARHGAP21 Missense_Mutation p.H291Y 0.49 tolerated(0.09) benign(0.326) TCGA-EE-A20C-06 10 25284707 25284707 A - ENKUR Frame_Shift_Del p.F105Lfs*2 0.37 TCGA-EE-A20C-06 10 25888112 25888112 G T GPR158 Missense_Mutation p.R1186I 0.47 deleterious(0.02) benign(0.169) TCGA-EE-A20C-06 10 26243860 26243860 C A MYO3A Missense_Mutation p.P76T 0.49 deleterious(0) probably_damaging(0.948) TCGA-EE-A20C-06 10 26462877 26462877 G A MYO3A Silent p.R1228R 0.60 TCGA-EE-A20C-06 10 26490216 26490216 G A MYO3A Missense_Mutation p.R1523Q 0.46 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-EE-A20C-06 10 26513567 26513567 G A GAD2 Silent p.G237G 0.43 TCGA-EE-A20C-06 10 26562596 26562596 G A GAD2 Missense_Mutation p.R375Q 0.31 tolerated(0.18) benign(0.003) TCGA-EE-A20C-06 10 27366409 27366409 G A ANKRD26 Missense_Mutation p.S312F 0.47 tolerated(0.19) benign(0.022) TCGA-EE-A20C-06 10 27389211 27389211 G A ANKRD26 Silent p.S15S 0.43 TCGA-EE-A20C-06 10 27408325 27408325 A G YME1L1 Silent p.L546L 0.48 TCGA-EE-A20C-06 10 27436370 27436370 G A YME1L1 Intron 0.26 TCGA-EE-A20C-06 10 27497367 27497367 C T ACBD5 Silent p.R404R 0.26 TCGA-EE-A20C-06 10 27702556 27702556 G A PTCHD3 Silent p.F208F 0.50 TCGA-EE-A20C-06 10 28409238 28409238 T G MPP7 Missense_Mutation p.K258Q 0.49 deleterious(0.02) possibly_damaging(0.661) TCGA-EE-A20C-06 10 29599998 29599998 G A LYZL1 3'UTR 0.47 TCGA-EE-A20C-06 10 29833940 29833940 G A SVIL Intron 0.42 TCGA-EE-A20C-06 10 30336468 30336468 C T KIAA1462 Missense_Mutation p.E92K 0.43 tolerated(0.07) possibly_damaging(0.732) TCGA-EE-A20C-06 10 30336469 30336469 C T KIAA1462 Silent p.S91S 0.43 TCGA-EE-A20C-06 10 32309990 32309990 C T KIF5B Missense_Mutation p.E722K 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A20C-06 10 34759113 34759113 G A PARD3 Missense_Mutation p.S161F 0.48 deleterious(0) benign(0.308) TCGA-EE-A20C-06 10 37414911 37414911 C T ANKRD30A Missense_Mutation p.L10F 0.43 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A20C-06 10 37430649 37430649 G A ANKRD30A Missense_Mutation p.G219E 0.46 tolerated(0.47) benign(0.118) TCGA-EE-A20C-06 10 43623687 43623687 G A RET Silent p.A1105A 0.48 TCGA-EE-A20C-06 10 43701390 43701390 G A RASGEF1A Missense_Mutation p.P59S 0.41 deleterious(0) probably_damaging(0.929) TCGA-EE-A20C-06 10 43971179 43971179 C T ZNF487 5'UTR 0.33 TCGA-EE-A20C-06 10 46959939 46959939 C T SYT15 3'Flank 0.47 TCGA-EE-A20C-06 10 46967612 46967612 C T SYT15 Silent p.V155V 0.29 TCGA-EE-A20C-06 10 46967675 46967675 G A SYT15 Silent p.F134F 0.16 TCGA-EE-A20C-06 10 48414276 48414276 G A GDF2 Nonsense_Mutation p.Q198* 0.53 TCGA-EE-A20C-06 10 49386146 49386146 C T FRMPD2 Missense_Mutation p.E947K 0.44 deleterious(0.02) benign(0.142) TCGA-EE-A20C-06 10 49431207 49431207 G T FRMPD2 Missense_Mutation p.F425L 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 10 50285269 50285269 G A VSTM4 Missense_Mutation p.S210F 0.44 tolerated(0.06) possibly_damaging(0.467) TCGA-EE-A20C-06 10 50952798 50952798 C T OGDHL Missense_Mutation p.E544K 0.39 tolerated(0.1) benign(0.14) TCGA-EE-A20C-06 10 5149687 5149687 G A AKR1C3 Missense_Mutation p.E322K 0.32 deleterious(0.01) benign(0.031) TCGA-EE-A20C-06 10 51770067 51770067 C T AGAP6 3'UTR 0.58 TCGA-EE-A20C-06 10 5204836 5204836 C T AKR1CL1 Missense_Mutation p.E81K 0.43 deleterious(0) benign(0.006) TCGA-EE-A20C-06 10 52067903 52067903 G A SGMS1 Missense_Mutation p.P301S 0.44 deleterious(0.04) possibly_damaging(0.764) TCGA-EE-A20C-06 10 54048561 54048561 A G PRKG1 Silent p.P595P 0.40 TCGA-EE-A20C-06 10 5541009 5541009 G C CALML5 Missense_Mutation p.D131E 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 10 55569124 55569124 G A PCDH15 Silent p.I496I 0.45 TCGA-EE-A20C-06 10 55582826 55582826 G A PCDH15 Missense_Mutation p.P1556S 0.36 tolerated_low_confidence(0.17) benign(0.019) TCGA-EE-A20C-06 10 55616960 55616960 C T PCDH15 Missense_Mutation p.E1261K 0.40 deleterious(0.03) benign(0.443) TCGA-EE-A20C-06 10 5979147 5979147 C T FBXO18 Silent p.F1063F 0.42 TCGA-EE-A20C-06 10 61833799 61833799 A C ANK3 Missense_Mutation p.F2280L 0.40 possibly_damaging(0.899) TCGA-EE-A20C-06 10 61834223 61834223 G A ANK3 Missense_Mutation p.S2139L 0.51 probably_damaging(0.95) TCGA-EE-A20C-06 10 61834260 61834260 C T ANK3 Missense_Mutation p.D2127N 0.43 probably_damaging(0.977) TCGA-EE-A20C-06 10 61898739 61898739 G A ANK3 Silent p.L907L 0.18 TCGA-EE-A20C-06 10 62631393 62631393 G A RHOBTB1 Silent p.F646F 0.42 TCGA-EE-A20C-06 10 63188866 63188866 C T TMEM26 Silent p.E141E 0.48 TCGA-EE-A20C-06 10 6533674 6533674 C T PRKCQ Missense_Mutation p.G254E 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 10 67680275 67680275 C T CTNNA3 Missense_Mutation p.R834Q 0.40 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 10 68381491 68381491 C T CTNNA3 Missense_Mutation p.V445I 0.26 tolerated(0.22) benign(0.001) TCGA-EE-A20C-06 10 69571261 69571261 C T DNAJC12 Intron 0.23 TCGA-EE-A20C-06 10 69926384 69926384 C T MYPN Missense_Mutation p.P645L 0.50 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A20C-06 10 69934132 69934132 A T MYPN Missense_Mutation p.E761D 0.45 tolerated(0.1) benign(0.022) TCGA-EE-A20C-06 10 70446175 70446175 C T TET1 Silent p.L1705L 0.37 TCGA-EE-A20C-06 10 71005962 71005962 G A HKDC1 Missense_Mutation p.E335K 0.54 tolerated(0.39) benign(0.007) TCGA-EE-A20C-06 10 71582173 71582173 C T COL13A1 Missense_Mutation p.P115S 0.36 tolerated(0.34) benign(0.007) TCGA-EE-A20C-06 10 71582174 71582174 C T COL13A1 Missense_Mutation p.P115L 0.36 tolerated(0.14) benign(0.116) TCGA-EE-A20C-06 10 73464786 73464786 C T CDH23 Missense_Mutation p.T543I 0.47 tolerated(0.11) benign(0.135) TCGA-EE-A20C-06 10 73491868 73491868 G A CDH23 Missense_Mutation p.M1285I 0.69 tolerated(0.34) benign(0.043) TCGA-EE-A20C-06 10 73544156 73544156 G A CDH23 Silent p.G1832G 0.42 TCGA-EE-A20C-06 10 73553005 73553005 G A CDH23 5'Flank 0.47 TCGA-EE-A20C-06 10 73556880 73556880 C T CDH23 Silent p.S4S 0.39 TCGA-EE-A20C-06 10 73822656 73822656 G A SPOCK2 Silent p.I379I 0.47 TCGA-EE-A20C-06 10 74631160 74631160 C T MCU Missense_Mutation p.A228V 0.42 tolerated(0.05) possibly_damaging(0.775) TCGA-EE-A20C-06 10 74806745 74806745 G A P4HA1 Missense_Mutation p.R339C 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20C-06 10 75034301 75034301 G A TTC18 Missense_Mutation p.H979Y 0.45 tolerated(0.77) possibly_damaging(0.461) TCGA-EE-A20C-06 10 75553742 75553742 C - ZSWIM8 Frame_Shift_Del p.R856Efs*21 0.38 TCGA-EE-A20C-06 10 75673108 75673108 C T PLAU Silent p.V143V 0.43 TCGA-EE-A20C-06 10 81065958 81065958 C T ZMIZ1 Missense_Mutation p.S842F 0.47 possibly_damaging(0.553) TCGA-EE-A20C-06 10 81697732 81697732 G A SFTPD Missense_Mutation p.S335F 0.43 deleterious(0) probably_damaging(0.973) TCGA-EE-A20C-06 10 82369257 82369257 G A SH2D4B Missense_Mutation p.R312H 0.24 deleterious(0.04) probably_damaging(0.944) TCGA-EE-A20C-06 10 85974289 85974289 C T CDHR1 Missense_Mutation p.T831I 0.57 tolerated_low_confidence(0.12) benign(0.027) TCGA-EE-A20C-06 10 87628830 87628830 C T GRID1 Silent p.R296R 0.42 TCGA-EE-A20C-06 10 88476310 88476310 C T LDB3 Silent p.S491S 0.48 TCGA-EE-A20C-06 10 91162363 91162363 C T IFIT1 Silent p.L111L 0.49 TCGA-EE-A20C-06 10 93741920 93741920 C T BTAF1 Silent p.T662T 0.48 TCGA-EE-A20C-06 10 93768959 93768959 G C BTAF1 Missense_Mutation p.R1366T 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 10 93799 93799 G A TUBB8 Missense_Mutation p.T178I 0.45 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A20C-06 10 94230032 94230032 G A IDE Silent p.L729L 0.45 TCGA-EE-A20C-06 10 94836737 94836737 G A CYP26A1 Silent p.K390K 0.52 TCGA-EE-A20C-06 10 95380727 95380727 G A PDE6C Missense_Mutation p.R238Q 0.45 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A20C-06 10 95556971 95556971 G A LGI1 Nonsense_Mutation p.W362* 0.38 TCGA-EE-A20C-06 10 96454810 96454810 G A CYP2C18 Silent p.R206R 0.49 TCGA-EE-A20C-06 10 96535251 96535251 C T CYP2C19 Nonsense_Mutation p.Q146* 0.44 TCGA-EE-A20C-06 10 96702028 96702028 G A CYP2C9 Silent p.G137G 0.41 TCGA-EE-A20C-06 10 96818163 96818163 C T CYP2C8 Missense_Mutation p.E250K 0.26 tolerated(0.11) benign(0.15) TCGA-EE-A20C-06 10 96827077 96827077 G A CYP2C8 Silent p.I123I 0.42 TCGA-EE-A20C-06 10 98064428 98064428 G A DNTT Silent p.R58R 0.27 TCGA-EE-A20C-06 10 98130031 98130031 G A TLL2 Missense_Mutation p.L902F 0.38 tolerated(0.24) benign(0.344) TCGA-EE-A20C-06 10 98802742 98802742 C T SLIT1 Missense_Mutation p.G694R 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 10 99192263 99192263 G A PGAM1 Silent p.Q249Q 0.38 TCGA-EE-A20C-06 11 100141826 100141826 C T CNTN5 Missense_Mutation p.P723S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 11 1015761 1015761 C T MUC6 Splice_Site p.X2347_splice 0.26 TCGA-EE-A20C-06 11 102562437 102562437 C T MMP27 3'UTR 0.35 TCGA-EE-A20C-06 11 102661499 102661499 G A MMP1 Missense_Mutation p.P412L 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 11 103060423 103060423 C A DYNC2H1 Missense_Mutation p.Q2439K 0.47 benign(0.085) TCGA-EE-A20C-06 11 103908010 103908010 C T DDI1 Missense_Mutation p.P154S 0.44 deleterious(0) benign(0.309) TCGA-EE-A20C-06 11 105009598 105009598 A T CARD18 Missense_Mutation p.F72Y 0.51 deleterious(0.03) probably_damaging(0.944) TCGA-EE-A20C-06 11 105775945 105775945 G A GRIA4 Missense_Mutation p.G359E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 11 108058825 108058825 C T NPAT Missense_Mutation p.S213N 0.50 tolerated(0.09) benign(0.276) TCGA-EE-A20C-06 11 108544193 108544193 G A DDX10 Splice_Site p.X63_splice 0.40 TCGA-EE-A20C-06 11 111657226 111657226 C T ALG9 Silent p.R413R 0.43 TCGA-EE-A20C-06 11 111779560 111779560 G A CRYAB Silent p.V152V 0.53 TCGA-EE-A20C-06 11 113281576 113281576 T C DRD2 Missense_Mutation p.N402S 0.49 tolerated(0.22) benign(0.024) TCGA-EE-A20C-06 11 113802525 113802525 G A HTR3B Missense_Mutation p.E102K 0.46 tolerated(0.14) benign(0.428) TCGA-EE-A20C-06 11 113935271 113935271 G A ZBTB16 Missense_Mutation p.E417K 0.48 tolerated(0.06) benign(0.065) TCGA-EE-A20C-06 11 114113047 114113047 C T ZBTB16 Missense_Mutation p.R538C 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 11 114167233 114167233 G A NNMT 5'UTR 0.53 TCGA-EE-A20C-06 11 114167419 114167419 G A NNMT Silent p.K47K 0.52 TCGA-EE-A20C-06 11 114453041 114453041 G A NXPE4 Missense_Mutation p.L267F 0.41 deleterious(0.04) possibly_damaging(0.712) TCGA-EE-A20C-06 11 116729393 116729393 G A SIK3 Missense_Mutation p.P824S 0.46 tolerated_low_confidence(0.17) benign(0.16) TCGA-EE-A20C-06 11 117161341 117161341 G A BACE1 Missense_Mutation p.S376F 0.37 tolerated(0.05) benign(0.403) TCGA-EE-A20C-06 11 117392001 117392001 C T DSCAML1 Missense_Mutation p.E413K 0.37 tolerated(0.3) benign(0.341) TCGA-EE-A20C-06 11 117392002 117392002 C T DSCAML1 Silent p.T412T 0.39 TCGA-EE-A20C-06 11 117985853 117985853 G A TMPRSS4 Missense_Mutation p.G337E 0.50 tolerated(0.07) possibly_damaging(0.85) TCGA-EE-A20C-06 11 118183553 118183553 G A CD3E Silent p.A108A 0.41 TCGA-EE-A20C-06 11 118245820 118245820 C G UBE4A Silent p.L449L 0.52 TCGA-EE-A20C-06 11 119510718 119510718 C T RP11-196E1.3 RNA 0.62 TCGA-EE-A20C-06 11 120996388 120996388 C T TECTA Silent p.L527L 0.38 TCGA-EE-A20C-06 11 121456993 121456993 G A SORL1 Missense_Mutation p.D1257N 0.51 tolerated(0.39) benign(0.107) TCGA-EE-A20C-06 11 121498415 121498415 C T SORL1 Silent p.F2172F 0.40 TCGA-EE-A20C-06 11 122775981 122775981 C T C11orf63 Intron 0.49 TCGA-EE-A20C-06 11 12278353 12278353 C T MICAL2 Missense_Mutation p.P993S 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A20C-06 11 123676245 123676245 G A OR6M1 Silent p.A271A 0.45 TCGA-EE-A20C-06 11 123813578 123813578 T A OR6T1 Missense_Mutation p.K323I 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.902) TCGA-EE-A20C-06 11 123847875 123847875 G A OR10S1 Missense_Mutation p.S175F 0.35 tolerated(0.61) benign(0.006) TCGA-EE-A20C-06 11 124189815 124189815 G T OR8D2 Silent p.S93S 0.40 TCGA-EE-A20C-06 11 124266365 124266365 C T OR8B3 Missense_Mutation p.D295N 0.19 deleterious_low_confidence(0.01) benign(0.025) TCGA-EE-A20C-06 11 124310552 124310552 G A OR8B8 Missense_Mutation p.L144F 0.50 deleterious_low_confidence(0.03) benign(0.443) TCGA-EE-A20C-06 11 124763833 124763833 A G ROBO4 Missense_Mutation p.V476A 0.54 tolerated(0.39) benign(0.145) TCGA-EE-A20C-06 11 124789674 124789674 C T HEPN1 Missense_Mutation p.P10S 0.26 tolerated_low_confidence(0.49) benign(0.127) TCGA-EE-A20C-06 11 124789675 124789675 C T HEPN1 Missense_Mutation p.P10L 0.22 tolerated_low_confidence(0.71) benign(0.001) TCGA-EE-A20C-06 11 124857469 124857469 C T CCDC15 Silent p.F449F 0.46 TCGA-EE-A20C-06 11 125778306 125778306 C T DDX25 Missense_Mutation p.L139F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 11 125867234 125867234 G A CDON Missense_Mutation p.R744W 0.43 deleterious(0.03) probably_damaging(1) TCGA-EE-A20C-06 11 128332386 128332386 T A ETS1 Missense_Mutation p.K443I 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 11 128710121 128710121 C T KCNJ1 Silent p.R25R 0.57 TCGA-EE-A20C-06 11 1432607 1432607 G A BRSK2 5'UTR 0.21 TCGA-EE-A20C-06 11 1718667 1718667 G A KRTAP5-6 Silent p.G64G 0.22 TCGA-EE-A20C-06 11 1774720 1774720 G A CTSD 3'UTR 0.22 TCGA-EE-A20C-06 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.60 TCGA-EE-A20C-06 11 20077471 20077471 G T NAV2 Missense_Mutation p.R1623L 0.55 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 11 20676362 20676362 C T SLC6A5 Missense_Mutation p.S781F 0.74 deleterious(0) possibly_damaging(0.856) TCGA-EE-A20C-06 11 30034345 30034345 G A KCNA4 5'UTR 0.75 TCGA-EE-A20C-06 11 30902714 30902714 T C DCDC1 Missense_Mutation p.T1739A 0.58 tolerated(0.08) benign(0.388) TCGA-EE-A20C-06 11 320715 320715 C T IFITM3 Silent p.G33G 0.66 TCGA-EE-A20C-06 11 320716 320716 C T IFITM3 Missense_Mutation p.G33E 0.66 deleterious(0.03) benign(0.323) TCGA-EE-A20C-06 11 33667283 33667283 C G KIAA1549L Missense_Mutation p.R1524G 0.19 tolerated(0.09) probably_damaging(1) TCGA-EE-A20C-06 11 34501801 34501801 T C ELF5 Silent p.G254G 0.30 TCGA-EE-A20C-06 11 35282395 35282395 G A SLC1A2 3'UTR 0.78 TCGA-EE-A20C-06 11 36598008 36598008 T C RAG1 3'UTR 0.58 TCGA-EE-A20C-06 11 3660940 3660940 G A ART5 Missense_Mutation p.A240V 0.21 tolerated(0.29) benign(0.014) TCGA-EE-A20C-06 11 36614448 36614448 T A RAG2 Missense_Mutation p.D424V 0.23 tolerated(0.09) possibly_damaging(0.642) TCGA-EE-A20C-06 11 36615431 36615431 C T RAG2 Silent p.G96G 0.56 TCGA-EE-A20C-06 11 381764 381764 G A B4GALNT4 Missense_Mutation p.R1031K 0.65 tolerated(1) unknown(0) TCGA-EE-A20C-06 11 381765 381765 G A B4GALNT4 Silent p.R1031R 0.64 TCGA-EE-A20C-06 11 4389193 4389193 G A OR52B4 Silent p.I111I 0.42 TCGA-EE-A20C-06 11 4470611 4470611 C T OR52K2 Silent p.F14F 0.50 TCGA-EE-A20C-06 11 44939592 44939592 G A TSPAN18 Missense_Mutation p.E110K 0.26 tolerated(0.56) possibly_damaging(0.854) TCGA-EE-A20C-06 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.62 tolerated(0.12) probably_damaging(0.988) TCGA-EE-A20C-06 11 4566492 4566492 C T OR52M1 Silent p.S24S 0.67 TCGA-EE-A20C-06 11 4598944 4598944 C T C11orf40 Missense_Mutation p.R36K 0.37 tolerated_low_confidence(1) benign(0.14) TCGA-EE-A20C-06 11 46341928 46341928 C T CREB3L1 Missense_Mutation p.P458S 0.67 tolerated_low_confidence(0.53) benign(0.001) TCGA-EE-A20C-06 11 47202098 47202098 G A PACSIN3 Missense_Mutation p.H119Y 0.33 deleterious(0) probably_damaging(0.974) TCGA-EE-A20C-06 11 47308070 47308070 T A MADD Missense_Mutation p.F880I 0.67 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-EE-A20C-06 11 47311486 47311486 A G MADD Missense_Mutation p.N962S 0.67 tolerated(0.21) benign(0.008) TCGA-EE-A20C-06 11 47380543 47380544 GG A SPI1 Frame_Shift_Del p.P116Lfs*71 0.20 TCGA-EE-A20C-06 11 47698916 47698916 C T AGBL2 Missense_Mutation p.R685Q 0.20 tolerated(1) benign(0.002) TCGA-EE-A20C-06 11 48239237 48239237 G A OR4B1 Silent p.V292V 0.43 TCGA-EE-A20C-06 11 4869628 4869628 G A OR51S1 Missense_Mutation p.P271S 0.33 deleterious(0.01) benign(0.001) TCGA-EE-A20C-06 11 49168282 49168282 C T FOLH1 3'UTR 0.38 TCGA-EE-A20C-06 11 5068078 5068078 C T OR52J3 Missense_Mutation p.A108V 0.59 tolerated(0.52) benign(0.184) TCGA-EE-A20C-06 11 51515683 51515683 G A OR4C46 Missense_Mutation p.M134I 0.21 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-EE-A20C-06 11 5274480 5274480 G A HBG2 3'UTR 0.50 TCGA-EE-A20C-06 11 5322328 5322328 G A OR51B4 Silent p.F283F 0.41 TCGA-EE-A20C-06 11 5364678 5364678 G A OR51B5 Missense_Mutation p.S26F 0.33 deleterious(0.05) benign(0.077) TCGA-EE-A20C-06 11 5462631 5462631 C T OR51I1 Missense_Mutation p.M38I 0.64 tolerated(0.76) benign(0.005) TCGA-EE-A20C-06 11 55418813 55418813 G A OR4S2 Missense_Mutation p.G145E 0.71 tolerated(0.12) probably_damaging(1) TCGA-EE-A20C-06 11 55541558 55541558 C T OR5D13 Silent p.I215I 0.39 TCGA-EE-A20C-06 11 55563154 55563154 G A OR5D14 Silent p.V41V 0.45 TCGA-EE-A20C-06 11 55579528 55579528 G A OR5L1 Missense_Mutation p.E196K 0.28 tolerated(0.1) benign(0.042) TCGA-EE-A20C-06 11 55798647 55798647 C T OR5AS1 Silent p.F251F 0.36 TCGA-EE-A20C-06 11 55944627 55944627 C T OR5J2 Silent p.F178F 0.35 TCGA-EE-A20C-06 11 55944940 55944940 C T OR5J2 Missense_Mutation p.P283S 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 11 56086579 56086579 C T OR8K3 Missense_Mutation p.S266F 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-EE-A20C-06 11 56143654 56143654 C T OR8U1 Silent p.L185L 0.10 TCGA-EE-A20C-06 11 56309917 56309917 T - OR5M11 Frame_Shift_Del p.I273* 0.27 TCGA-EE-A20C-06 11 5664061 5664061 C T TRIM34 Missense_Mutation p.R297W 0.21 deleterious(0) possibly_damaging(0.836) TCGA-EE-A20C-06 11 56949360 56949360 G A LRRC55 5'UTR 0.37 TCGA-EE-A20C-06 11 5757774 5757774 A T OR56B1 Missense_Mutation p.I10F 0.29 tolerated(0.71) benign(0.001) TCGA-EE-A20C-06 11 57886267 57886267 G A OR9I1 Missense_Mutation p.S217F 0.65 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 11 57958403 57958403 G A OR9Q2 Silent p.G147G 0.31 TCGA-EE-A20C-06 11 58190695 58190695 C T OR5B2 Missense_Mutation p.G14R 0.44 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A20C-06 11 58602030 58602030 C T GLYATL2 Missense_Mutation p.E253K 0.49 tolerated(0.74) benign(0) TCGA-EE-A20C-06 11 59190058 59190058 C T OR5A2 Silent p.R123R 0.20 TCGA-EE-A20C-06 11 59271453 59271453 C T OR4D11 Silent p.I135I 0.38 TCGA-EE-A20C-06 11 59406624 59406624 G A PATL1 Nonsense_Mutation p.Q730* 0.63 TCGA-EE-A20C-06 11 59406625 59406625 G A PATL1 Silent p.P729P 0.62 TCGA-EE-A20C-06 11 59857903 59857903 C A MS4A2 Nonsense_Mutation p.S94* 0.41 TCGA-EE-A20C-06 11 59942973 59942973 A G MS4A6A Silent p.L179L 0.35 TCGA-EE-A20C-06 11 60783189 60783189 C T CD6 Silent p.F464F 0.57 TCGA-EE-A20C-06 11 61912743 61912743 C T INCENP Silent p.I606I 0.41 TCGA-EE-A20C-06 11 62288540 62288540 G A AHNAK Missense_Mutation p.P4450L 0.30 probably_damaging(0.979) TCGA-EE-A20C-06 11 6261570 6261570 G A CNGA4 Nonsense_Mutation p.W182* 0.57 TCGA-EE-A20C-06 11 6261572 6261572 A C CNGA4 Missense_Mutation p.N183T 0.56 deleterious(0) probably_damaging(0.982) TCGA-EE-A20C-06 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.58 TCGA-EE-A20C-06 11 64028931 64028931 C T PLCB3 Silent p.I597I 0.32 TCGA-EE-A20C-06 11 64525789 64525789 G A PYGM Silent p.L153L 0.42 TCGA-EE-A20C-06 11 6478607 6478607 G A TRIM3 Silent p.F205F 0.59 TCGA-EE-A20C-06 11 64800007 64800007 C T SNX15 Silent p.P80P 0.35 TCGA-EE-A20C-06 11 64800008 64800008 C T SNX15 Missense_Mutation p.R81W 0.33 deleterious(0) probably_damaging(0.913) TCGA-EE-A20C-06 11 64888139 64888139 G A FAU 3'UTR 0.44 TCGA-EE-A20C-06 11 64956141 64956141 C T CAPN1 Silent p.I363I 0.44 TCGA-EE-A20C-06 11 65271911 65271911 A G MALAT1 RNA 0.56 TCGA-EE-A20C-06 11 65272161 65272161 C T MALAT1 RNA 0.44 TCGA-EE-A20C-06 11 65338926 65338926 C T SSSCA1 Silent p.L107L 0.43 TCGA-EE-A20C-06 11 65386194 65386194 C T PCNXL3 Missense_Mutation p.S454F 0.48 deleterious(0.01) possibly_damaging(0.809) TCGA-EE-A20C-06 11 65827417 65827417 C T SF3B2 Silent p.F522F 0.53 TCGA-EE-A20C-06 11 65836244 65836244 C T SF3B2 3'UTR 0.50 TCGA-EE-A20C-06 11 66099971 66099971 G A RIN1 Nonsense_Mutation p.Q710* 0.49 TCGA-EE-A20C-06 11 66625463 66625463 C T LRFN4 Missense_Mutation p.A83V 0.08 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A20C-06 11 67187015 67187015 C T CARNS1 Missense_Mutation p.P304S 0.42 tolerated(0.24) benign(0.003) TCGA-EE-A20C-06 11 67219721 67219721 C T GPR152 Missense_Mutation p.A159T 0.44 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 11 67219722 67219722 C T GPR152 Silent p.L158L 0.44 TCGA-EE-A20C-06 11 67430836 67430836 G A ALDH3B2 Silent p.F336F 0.40 TCGA-EE-A20C-06 11 67832066 67832066 G A CHKA Silent p.F386F 0.47 TCGA-EE-A20C-06 11 67926252 67926252 G T SUV420H1 Missense_Mutation p.P521T 0.39 tolerated(0.33) benign(0.003) TCGA-EE-A20C-06 11 68029831 68029831 G A C11orf24 Missense_Mutation p.A211V 0.45 tolerated(0.12) possibly_damaging(0.866) TCGA-EE-A20C-06 11 68181200 68181200 C T LRP5 Silent p.F849F 0.44 TCGA-EE-A20C-06 11 68216449 68216449 G A LRP5 Missense_Mutation p.E1587K 0.31 deleterious(0.02) possibly_damaging(0.704) TCGA-EE-A20C-06 11 68525121 68525121 G A CPT1A Silent p.S771S 0.43 TCGA-EE-A20C-06 11 69063580 69063580 G A MYEOV Silent p.L221L 0.39 TCGA-EE-A20C-06 11 69482350 69482350 A G ORAOV1 Silent p.C117C 0.56 TCGA-EE-A20C-06 11 70171015 70171015 G A PPFIA1 Silent p.V143V 0.44 TCGA-EE-A20C-06 11 70185379 70185379 C G PPFIA1 Silent p.G558G 0.44 TCGA-EE-A20C-06 11 70185380 70185380 C T PPFIA1 Missense_Mutation p.R559W 0.45 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 11 70333007 70333007 C T SHANK2 Missense_Mutation p.D1132N 0.45 tolerated(0.24) benign(0.001) TCGA-EE-A20C-06 11 7059831 7059831 C T NLRP14 Missense_Mutation p.S5L 0.30 tolerated(0.22) benign(0.001) TCGA-EE-A20C-06 11 71166155 71166155 G A NADSYN1 Splice_Site p.X29_splice 0.41 TCGA-EE-A20C-06 11 72579048 72579048 G A FCHSD2 Silent p.A390A 0.47 TCGA-EE-A20C-06 11 74009403 74009403 C T P4HA3 Missense_Mutation p.A191T 0.47 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A20C-06 11 74914118 74914118 G A SLCO2B1 Intron 0.56 TCGA-EE-A20C-06 11 7507106 7507106 G A OLFML1 5'UTR 0.57 TCGA-EE-A20C-06 11 75715092 75715092 G A UVRAG Silent p.K290K 0.52 TCGA-EE-A20C-06 11 76979976 76979976 G T GDPD4 Missense_Mutation p.A206E 0.48 deleterious(0) probably_damaging(0.978) TCGA-EE-A20C-06 11 77388020 77388020 G A RSF1 Missense_Mutation p.S1053F 0.38 deleterious(0) probably_damaging(0.945) TCGA-EE-A20C-06 11 7818441 7818441 G A OR5P2 Silent p.L17L 0.40 TCGA-EE-A20C-06 11 7981922 7981922 G A NLRP10 Silent p.L413L 0.34 TCGA-EE-A20C-06 11 7982819 7982819 C T NLRP10 Missense_Mutation p.E114K 0.68 tolerated(0.08) benign(0.062) TCGA-EE-A20C-06 11 8123035 8123035 G A TUB Missense_Mutation p.D519N 0.67 deleterious(0.02) possibly_damaging(0.716) TCGA-EE-A20C-06 11 92600312 92600312 C T FAT3 Missense_Mutation p.P4022S 0.40 possibly_damaging(0.878) TCGA-EE-A20C-06 11 93521326 93521326 C T MED17 Missense_Mutation p.P137L 0.42 tolerated(0.1) benign(0.081) TCGA-EE-A20C-06 11 94113726 94113726 C T GPR83 Silent p.K287K 0.34 TCGA-EE-A20C-06 11 95712456 95712456 G A MAML2 Missense_Mutation p.P1043S 0.54 unknown(0) TCGA-EE-A20C-06 11 99786792 99786792 G A CNTN5 Missense_Mutation p.G195E 0.67 tolerated(1) possibly_damaging(0.448) TCGA-EE-A20C-06 11 99827575 99827575 C T CNTN5 Silent p.S237S 0.46 TCGA-EE-A20C-06 12 100708392 100708392 G A SCYL2 Silent p.K365K 0.58 TCGA-EE-A20C-06 12 101381408 101381408 G A ANO4 Missense_Mutation p.D197N 0.56 deleterious(0.03) possibly_damaging(0.549) TCGA-EE-A20C-06 12 101413818 101413818 C T ANO4 Silent p.I212I 0.68 TCGA-EE-A20C-06 12 101433756 101433756 C T ANO4 Silent p.S272S 0.65 TCGA-EE-A20C-06 12 101488063 101488063 G A ANO4 Silent p.T542T 0.73 TCGA-EE-A20C-06 12 102038561 102038561 C T MYBPC1 Nonsense_Mutation p.R293* 0.67 TCGA-EE-A20C-06 12 102158584 102158584 G A GNPTAB Missense_Mutation p.P704L 0.34 deleterious(0.04) probably_damaging(1) TCGA-EE-A20C-06 12 103232941 103232941 C T PAH 3'UTR 0.33 TCGA-EE-A20C-06 12 104064568 104064568 G A STAB2 Missense_Mutation p.G785E 0.69 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 12 104083682 104083682 C T STAB2 Missense_Mutation p.S1035F 0.62 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 12 104519919 104519919 C T NFYB Missense_Mutation p.M68I 0.40 deleterious(0) possibly_damaging(0.877) TCGA-EE-A20C-06 12 104742176 104742176 C T TXNRD1 Missense_Mutation p.L643F 0.27 deleterious(0.02) benign(0.261) TCGA-EE-A20C-06 12 10571032 10571032 T A KLRC3 Nonsense_Mutation p.K133* 0.26 TCGA-EE-A20C-06 12 10783813 10783813 G A STYK1 Silent p.N94N 0.38 TCGA-EE-A20C-06 12 108686708 108686708 G A CMKLR1 Missense_Mutation p.S11F 0.28 deleterious(0) benign(0.031) TCGA-EE-A20C-06 12 109316514 109316514 C T SVOP Missense_Mutation p.E305K 0.60 tolerated(0.68) benign(0.001) TCGA-EE-A20C-06 12 109865298 109865298 G A MYO1H Missense_Mutation p.R603K 0.54 tolerated(0.09) benign(0.011) TCGA-EE-A20C-06 12 110236612 110236612 C T TRPV4 Missense_Mutation p.R320Q 0.23 tolerated(0.34) possibly_damaging(0.826) TCGA-EE-A20C-06 12 11035181 11035181 G A PRH1 Missense_Mutation p.P73S 0.53 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A20C-06 12 110450985 110450985 A G ANKRD13A Silent p.Q95Q 0.59 TCGA-EE-A20C-06 12 111350910 111350910 G A MYL2 Missense_Mutation p.S131F 0.57 deleterious(0) probably_damaging(0.972) TCGA-EE-A20C-06 12 112093432 112093432 C T BRAP Missense_Mutation p.E417K 0.57 deleterious(0) possibly_damaging(0.492) TCGA-EE-A20C-06 12 112677020 112677020 A G HECTD4 Missense_Mutation p.V1563A 0.19 possibly_damaging(0.84) TCGA-EE-A20C-06 12 113385903 113385903 C T OAS3 Missense_Mutation p.P343L 0.50 tolerated(0.08) benign(0.016) TCGA-EE-A20C-06 12 113444298 113444298 G A OAS2 Missense_Mutation p.G517R 0.64 tolerated(0.11) benign(0.429) TCGA-EE-A20C-06 12 113723740 113723740 G A TPCN1 Silent p.V572V 0.59 TCGA-EE-A20C-06 12 11420926 11420926 C T PRB3 Missense_Mutation p.G86E 0.27 deleterious(0) unknown(0) TCGA-EE-A20C-06 12 11546330 11546330 C T PRB2 Missense_Mutation p.G228R 0.33 deleterious(0.03) unknown(0) TCGA-EE-A20C-06 12 116429709 116429709 T A MED13L Missense_Mutation p.Q1017L 0.71 deleterious(0) unknown(0) TCGA-EE-A20C-06 12 117962911 117962911 G A KSR2 Silent p.F655F 0.16 TCGA-EE-A20C-06 12 118199079 118199079 C T KSR2 Silent p.L241L 0.24 TCGA-EE-A20C-06 12 120220404 120220404 A C CIT Missense_Mutation p.V528G 0.22 tolerated(0.11) benign(0.071) TCGA-EE-A20C-06 12 120580353 120580353 G A GCN1L1 Silent p.L1929L 0.53 TCGA-EE-A20C-06 12 120760022 120760022 C T PLA2G1B Missense_Mutation p.D141N 0.23 tolerated(0.15) benign(0.111) TCGA-EE-A20C-06 12 121154737 121154737 C T UNC119B Missense_Mutation p.R179W 0.63 deleterious(0) probably_damaging(0.99) TCGA-EE-A20C-06 12 121176362 121176362 C G ACADS Silent p.G274G 0.30 TCGA-EE-A20C-06 12 122091160 122091160 C T MORN3 Missense_Mutation p.G157R 0.39 tolerated(0.06) benign(0.347) TCGA-EE-A20C-06 12 12247445 12247445 G A BCL2L14 Intron 0.50 TCGA-EE-A20C-06 12 123351923 123351923 G A VPS37B Missense_Mutation p.P200S 0.37 tolerated(0.15) possibly_damaging(0.693) TCGA-EE-A20C-06 12 123481385 123481385 G A PITPNM2 Silent p.P515P 0.42 TCGA-EE-A20C-06 12 123875206 123875206 C T SETD8 Silent p.I54I 0.50 TCGA-EE-A20C-06 12 123950422 123950422 C T SNRNP35 Missense_Mutation p.A117V 0.26 deleterious(0) possibly_damaging(0.757) TCGA-EE-A20C-06 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.33 probably_damaging(0.996) TCGA-EE-A20C-06 12 124398886 124398886 G A DNAH10 Missense_Mutation p.D3337N 0.59 probably_damaging(0.985) TCGA-EE-A20C-06 12 124839461 124839461 G A NCOR2 Missense_Mutation p.P1136S 0.55 probably_damaging(0.954) TCGA-EE-A20C-06 12 125397794 125397796 ATG TA UBC Frame_Shift_Del p.I175Tfs*21 0.34 TCGA-EE-A20C-06 12 12788821 12788821 C T CREBL2 Silent p.A42A 0.20 TCGA-EE-A20C-06 12 12788822 12788822 C T CREBL2 Nonsense_Mutation p.R43* 0.20 TCGA-EE-A20C-06 12 129822269 129822269 G A TMEM132D Silent p.V403V 0.67 TCGA-EE-A20C-06 12 14941977 14941977 G A WBP11 Missense_Mutation p.P467L 0.67 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A20C-06 12 14941978 14941978 G A WBP11 Missense_Mutation p.P467S 0.68 tolerated_low_confidence(0.27) unknown(0) TCGA-EE-A20C-06 12 1553829 1553829 C T ERC1 Silent p.L1042L 0.27 TCGA-EE-A20C-06 12 15704582 15704582 G A PTPRO Silent p.R845R 0.35 TCGA-EE-A20C-06 12 16052848 16052848 G A STRAP Silent p.K262K 0.61 TCGA-EE-A20C-06 12 18650614 18650614 T G PIK3C2G Missense_Mutation p.I942S 0.38 deleterious(0) possibly_damaging(0.862) TCGA-EE-A20C-06 12 18891277 18891277 G A CAPZA3 Silent p.G25G 0.59 TCGA-EE-A20C-06 12 20799791 20799791 G A PDE3A Silent p.L824L 0.27 TCGA-EE-A20C-06 12 20799792 20799792 G A PDE3A Missense_Mutation p.E825K 0.26 deleterious(0) probably_damaging(0.98) TCGA-EE-A20C-06 12 20874878 20874878 G A SLCO1C1 Missense_Mutation p.E306K 0.55 tolerated(0.44) benign(0.004) TCGA-EE-A20C-06 12 20893254 20893254 C T SLCO1C1 Missense_Mutation p.S562F 0.16 tolerated(0.06) possibly_damaging(0.665) TCGA-EE-A20C-06 12 21032429 21032429 A T SLCO1B3 Nonsense_Mutation p.K399* 0.65 TCGA-EE-A20C-06 12 21172310 21172310 G A SLCO1B7 Missense_Mutation p.G72R 0.56 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 12 21331610 21331610 T C SLCO1B1 Silent p.S194S 0.79 TCGA-EE-A20C-06 12 21716177 21716177 C T GYS2 Missense_Mutation p.R309Q 0.25 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A20C-06 12 22078976 22078976 G A ABCC9 Silent p.L102L 0.29 TCGA-EE-A20C-06 12 24736446 24736446 G A LINC00477 RNA 0.67 TCGA-EE-A20C-06 12 26634117 26634117 T C ITPR2 Missense_Mutation p.N2024D 0.65 deleterious(0.04) possibly_damaging(0.612) TCGA-EE-A20C-06 12 26868252 26868252 T A ITPR2 Nonsense_Mutation p.K279* 0.21 TCGA-EE-A20C-06 12 27540201 27540201 G A ARNTL2 Missense_Mutation p.G202E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 12 27554207 27554207 G A ARNTL2 Missense_Mutation p.G393E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 12 28460596 28460596 G A CCDC91 Missense_Mutation p.E164K 0.38 deleterious(0.05) possibly_damaging(0.814) TCGA-EE-A20C-06 12 2932953 2932953 G A ITFG2 Missense_Mutation p.E362K 0.56 tolerated(0.43) benign(0.097) TCGA-EE-A20C-06 12 31255196 31255196 G A DDX11 Missense_Mutation p.S741N 0.61 tolerated(0.06) possibly_damaging(0.464) TCGA-EE-A20C-06 12 32832265 32832265 C T DNM1L 5'UTR 0.54 TCGA-EE-A20C-06 12 32893025 32893025 G A DNM1L Missense_Mutation p.D579N 0.66 tolerated(0.49) benign(0.028) TCGA-EE-A20C-06 12 39997780 39997780 A G ABCD2 Silent p.I478I 0.18 TCGA-EE-A20C-06 12 40013110 40013110 T C ABCD2 Missense_Mutation p.E103G 0.32 deleterious(0) probably_damaging(0.967) TCGA-EE-A20C-06 12 42836513 42836513 C T PPHLN1 Silent p.P365P 0.31 TCGA-EE-A20C-06 12 43822140 43822140 C T ADAMTS20 Silent p.T1283T 0.64 TCGA-EE-A20C-06 12 43862455 43862455 C T ADAMTS20 Missense_Mutation p.E391K 0.27 deleterious(0) probably_damaging(0.976) TCGA-EE-A20C-06 12 46633584 46633584 G A SLC38A1 5'UTR 0.58 TCGA-EE-A20C-06 12 47170749 47170749 G A SLC38A4 Missense_Mutation p.S371F 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 12 47178369 47178369 C T SLC38A4 Missense_Mutation p.G150E 0.56 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 12 48251326 48251326 C T VDR Silent p.K191K 0.63 TCGA-EE-A20C-06 12 48369760 48369760 C T COL2A1 Missense_Mutation p.E1195K 0.31 unknown(0) TCGA-EE-A20C-06 12 4853789 4853789 C T GALNT8 Silent p.A261A 0.45 TCGA-EE-A20C-06 12 48888608 48888608 G A C12orf54 Missense_Mutation p.M90I 0.62 deleterious(0.05) benign(0.216) TCGA-EE-A20C-06 12 48919933 48919933 C T OR8S1 Silent p.I173I 0.18 TCGA-EE-A20C-06 12 48921816 48921816 C T OR8S1 Missense_Mutation p.P337L 0.62 benign(0) TCGA-EE-A20C-06 12 49231067 49231067 G A DDX23 Missense_Mutation p.P288L 0.23 deleterious(0.05) benign(0.046) TCGA-EE-A20C-06 12 49298807 49298807 G A CCDC65 Missense_Mutation p.E71K 0.20 tolerated(0.19) benign(0.081) TCGA-EE-A20C-06 12 49959431 49959431 A G MCRS1 Missense_Mutation p.F70L 0.46 deleterious(0.01) possibly_damaging(0.64) TCGA-EE-A20C-06 12 50869446 50869446 G A LARP4 Silent p.E658E 0.30 TCGA-EE-A20C-06 12 51069187 51069187 C T DIP2B Missense_Mutation p.P291L 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 12 52184276 52184276 C T SCN8A Missense_Mutation p.P1505L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 12 52200889 52200889 C T SCN8A Silent p.F1873F 0.36 TCGA-EE-A20C-06 12 52309151 52309151 C T ACVRL1 Silent p.S305S 0.50 TCGA-EE-A20C-06 12 52627350 52627350 G A KRT7 Silent p.E90E 0.62 TCGA-EE-A20C-06 12 52714916 52714916 G A KRT83 Silent p.F68F 0.29 TCGA-EE-A20C-06 12 53677305 53677305 G A ESPL1 Silent p.K1020K 0.69 TCGA-EE-A20C-06 12 54920357 54920357 C T NCKAP1L Silent p.I734I 0.17 TCGA-EE-A20C-06 12 55794708 55794708 C T OR6C65 Silent p.T132T 0.26 TCGA-EE-A20C-06 12 55794783 55794783 C T OR6C65 Silent p.P157P 0.33 TCGA-EE-A20C-06 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.19 tolerated_low_confidence(0.15) benign(0.32) TCGA-EE-A20C-06 12 55886657 55886657 T C OR6C68 Missense_Mutation p.F166L 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-EE-A20C-06 12 55887068 55887069 - T OR6C68 Frame_Shift_Ins p.K304Qfs*? 0.52 TCGA-EE-A20C-06 12 55887070 55887070 C G OR6C68 Silent p.L303L 0.55 TCGA-EE-A20C-06 12 56077598 56077598 G A METTL7B Missense_Mutation p.G167E 0.27 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 12 56086948 56086948 G A ITGA7 Missense_Mutation p.P901S 0.65 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A20C-06 12 56094755 56094755 C T ITGA7 Missense_Mutation p.G200S 0.78 deleterious(0) probably_damaging(0.98) TCGA-EE-A20C-06 12 56429190 56429190 C T IKZF4 3'UTR 0.88 TCGA-EE-A20C-06 12 56563639 56563639 C T SMARCC2 Silent p.E792E 0.59 TCGA-EE-A20C-06 12 5756967 5756967 C T ANO2 Missense_Mutation p.D516N 0.73 tolerated(0.17) benign(0.027) TCGA-EE-A20C-06 12 57571294 57571294 C T LRP1 Silent p.H1427H 0.71 TCGA-EE-A20C-06 12 57571295 57571295 C T LRP1 Missense_Mutation p.R1428W 0.71 possibly_damaging(0.901) TCGA-EE-A20C-06 12 57593717 57593717 C T LRP1 Missense_Mutation p.S3308F 0.63 probably_damaging(0.981) TCGA-EE-A20C-06 12 57597063 57597063 C T LRP1 Missense_Mutation p.S3604L 0.69 probably_damaging(0.999) TCGA-EE-A20C-06 12 58112151 58112151 C T OS9 Missense_Mutation p.R453C 0.63 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A20C-06 12 6128675 6128675 C T VWF Missense_Mutation p.M1303I 0.27 tolerated(0.23) benign(0.01) TCGA-EE-A20C-06 12 6140679 6140679 G A VWF Silent p.P917P 0.24 TCGA-EE-A20C-06 12 6140680 6140680 G A VWF Missense_Mutation p.P917L 0.24 tolerated(0.08) possibly_damaging(0.892) TCGA-EE-A20C-06 12 63042209 63042209 T C PPM1H 3'UTR 0.38 TCGA-EE-A20C-06 12 6421412 6421412 C T PLEKHG6 Missense_Mutation p.P7L 0.66 deleterious_low_confidence(0) benign(0.188) TCGA-EE-A20C-06 12 64521666 64521666 C T SRGAP1 Missense_Mutation p.P856S 0.17 tolerated(0.32) benign(0.017) TCGA-EE-A20C-06 12 65088621 65088621 C T RASSF3 Silent p.L216L 0.20 TCGA-EE-A20C-06 12 66345290 66345290 T G HMGA2 Intron 0.30 TCGA-EE-A20C-06 12 6679746 6679746 A C CHD4 3'UTR 0.60 TCGA-EE-A20C-06 12 66923667 66923667 C T GRIP1 Missense_Mutation p.R149Q 0.55 deleterious(0.02) benign(0.008) TCGA-EE-A20C-06 12 6709742 6709742 G A CHD4 Missense_Mutation p.R341C 0.26 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A20C-06 12 6709743 6709743 G A CHD4 Silent p.S340S 0.28 TCGA-EE-A20C-06 12 69250406 69250406 T A CPM Missense_Mutation p.K381N 0.68 tolerated(0.58) benign(0.005) TCGA-EE-A20C-06 12 6964919 6964919 A G USP5 Missense_Mutation p.K80E 0.32 tolerated(0.21) benign(0.066) TCGA-EE-A20C-06 12 7241295 7241295 C T C1R Missense_Mutation p.E316K 0.62 tolerated(0.67) benign(0.013) TCGA-EE-A20C-06 12 7276709 7276709 C T RBP5 3'UTR 0.53 TCGA-EE-A20C-06 12 7288863 7288863 C T CLSTN3 Silent p.I268I 0.26 TCGA-EE-A20C-06 12 7463245 7463245 G A ACSM4 Missense_Mutation p.V175M 0.62 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A20C-06 12 7510083 7510083 C T CD163L1 Splice_Site p.X1427_splice 0.72 TCGA-EE-A20C-06 12 7548820 7548820 C T CD163L1 Missense_Mutation p.G641R 0.57 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 12 7635318 7635318 G A CD163 Silent p.I1056I 0.56 TCGA-EE-A20C-06 12 78444681 78444681 C T NAV3 Missense_Mutation p.P757L 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 12 79611463 79611463 C T SYT1 Missense_Mutation p.P55L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 12 82147871 82147871 G A PPFIA2 Missense_Mutation p.R44C 0.75 deleterious(0) probably_damaging(0.947) TCGA-EE-A20C-06 12 8374676 8374676 G A FAM90A1 Silent p.S379S 0.42 TCGA-EE-A20C-06 12 89917436 89917436 C T POC1B-GALNT4 Silent p.R294R 0.22 TCGA-EE-A20C-06 12 9009929 9009929 G A A2ML1 Silent p.L1006L 0.22 TCGA-EE-A20C-06 12 91572301 91572301 A G DCN Missense_Mutation p.L10P 0.85 deleterious(0) probably_damaging(0.945) TCGA-EE-A20C-06 12 93100637 93100637 C T C12orf74 Missense_Mutation p.P77L 0.59 tolerated(0.36) benign(0.041) TCGA-EE-A20C-06 12 9349707 9349707 C T PZP Silent p.G256G 0.61 TCGA-EE-A20C-06 12 93793043 93793043 A G NUDT4 Missense_Mutation p.K145R 0.08 tolerated(0.84) benign(0.009) TCGA-EE-A20C-06 12 94975784 94975784 G A TMCC3 Silent p.S203S 0.25 TCGA-EE-A20C-06 12 95676127 95676127 C T VEZT Silent p.F345F 0.38 TCGA-EE-A20C-06 12 96059656 96059656 G A NTN4 Silent p.F560F 0.26 TCGA-EE-A20C-06 12 96288856 96288856 G A CCDC38 Missense_Mutation p.S228F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 12 96389601 96389601 C A HAL Nonsense_Mutation p.E30* 0.55 TCGA-EE-A20C-06 12 96402917 96402917 C G LTA4H Missense_Mutation p.M463I 0.52 tolerated(0.16) benign(0) TCGA-EE-A20C-06 12 98849702 98849702 G A SLC9A7P1 RNA 0.23 TCGA-EE-A20C-06 13 100517153 100517153 C T CLYBL Nonsense_Mutation p.R208* 0.40 TCGA-EE-A20C-06 13 101264734 101264734 C T TMTC4 Missense_Mutation p.R661K 0.36 tolerated(0.47) benign(0.012) TCGA-EE-A20C-06 13 103459816 103459816 T C BIVM-ERCC5 Missense_Mutation p.Y39H 0.56 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-EE-A20C-06 13 103698491 103698491 C T SLC10A2 Missense_Mutation p.E347K 0.35 tolerated(0.06) benign(0.006) TCGA-EE-A20C-06 13 108518260 108518260 A G FAM155A Missense_Mutation p.Y229H 0.46 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A20C-06 13 109704685 109704685 G A MYO16 Silent p.S948S 0.54 TCGA-EE-A20C-06 13 110831666 110831666 G A COL4A1 Missense_Mutation p.P766S 0.46 benign(0.036) TCGA-EE-A20C-06 13 110835408 110835408 C A COL4A1 Missense_Mutation p.G676V 0.36 probably_damaging(0.999) TCGA-EE-A20C-06 13 110866304 110866304 G A COL4A1 Missense_Mutation p.P68L 0.18 unknown(0) TCGA-EE-A20C-06 13 113768160 113768160 G A F7 Splice_Site p.X106_splice 0.49 TCGA-EE-A20C-06 13 114078655 114078655 T C ADPRHL1 Missense_Mutation p.K262E 0.44 tolerated(0.16) benign(0.148) TCGA-EE-A20C-06 13 114322262 114322262 G A GRK1 Silent p.E187E 0.27 TCGA-EE-A20C-06 13 19755938 19755938 C T TUBA3C 5'UTR 0.38 TCGA-EE-A20C-06 13 20656921 20656921 G A ZMYM2 Missense_Mutation p.G1190E 0.50 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 13 20716975 20716975 G A GJA3 Silent p.F151F 0.41 TCGA-EE-A20C-06 13 24465876 24465876 C T C1QTNF9B Missense_Mutation p.G185E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 13 25058797 25058797 G A PARP4 Missense_Mutation p.S481L 0.21 deleterious(0) probably_damaging(0.909) TCGA-EE-A20C-06 13 28136562 28136562 G A LNX2 Silent p.A404A 0.31 TCGA-EE-A20C-06 13 28597538 28597538 A G FLT3 Silent p.L789L 0.48 TCGA-EE-A20C-06 13 28597565 28597565 C T FLT3 Silent p.L780L 0.50 TCGA-EE-A20C-06 13 28877373 28877373 C T FLT1 Silent p.R1316R 0.50 TCGA-EE-A20C-06 13 33635799 33635799 C T KL Silent p.F861F 0.43 TCGA-EE-A20C-06 13 37678324 37678324 G A CSNK1A1L 3'UTR 0.47 TCGA-EE-A20C-06 13 38160383 38160383 A G POSTN Missense_Mutation p.L263P 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 13 39265085 39265085 G A FREM2 Missense_Mutation p.E1202K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 13 39338470 39338470 C T FREM2 Missense_Mutation p.R1765C 0.53 deleterious(0.01) benign(0.009) TCGA-EE-A20C-06 13 39544384 39544384 A G STOML3 Silent p.L152L 0.49 TCGA-EE-A20C-06 13 39918104 39918104 G A LHFP Missense_Mutation p.S191L 0.44 deleterious(0) benign(0.097) TCGA-EE-A20C-06 13 41134638 41134638 G A FOXO1 Silent p.P330P 0.39 TCGA-EE-A20C-06 13 43148574 43148574 C T TNFSF11 Silent p.S45S 0.54 TCGA-EE-A20C-06 13 49906097 49906097 A G CAB39L Missense_Mutation p.F274L 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 13 49906098 49906098 G A CAB39L Silent p.A273A 0.34 TCGA-EE-A20C-06 13 52604717 52604717 A T UTP14C Missense_Mutation p.M593L 0.47 tolerated(0.36) benign(0.006) TCGA-EE-A20C-06 13 53217429 53217429 A G HNRNPA1L2 Missense_Mutation p.N268D 0.39 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 13 60348867 60348867 G A DIAPH3 Missense_Mutation p.P1085L 0.44 tolerated(0.06) benign(0.005) TCGA-EE-A20C-06 13 60348868 60348868 G A DIAPH3 Missense_Mutation p.P1085S 0.44 tolerated(0.06) benign(0.14) TCGA-EE-A20C-06 13 76414233 76414233 C T LMO7 Missense_Mutation p.S922L 0.52 deleterious(0.01) benign(0.222) TCGA-EE-A20C-06 13 77799638 77799638 G A MYCBP2 Missense_Mutation p.P892L 0.41 benign(0.011) TCGA-EE-A20C-06 13 79911419 79911419 G A RBM26 Missense_Mutation p.L824F 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 13 95055327 95055327 G A GPC6 Silent p.T508T 0.47 TCGA-EE-A20C-06 13 95055328 95055328 G A GPC6 Missense_Mutation p.E509K 0.48 tolerated(0.31) probably_damaging(0.917) TCGA-EE-A20C-06 13 95822792 95822792 C T ABCC4 Silent p.L606L 0.25 TCGA-EE-A20C-06 13 96263699 96263699 C T DZIP1 Missense_Mutation p.G455R 0.37 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A20C-06 13 97485323 97485323 G A HS6ST3 Silent p.R429R 0.21 TCGA-EE-A20C-06 13 97485324 97485324 G A HS6ST3 Missense_Mutation p.D430N 0.23 tolerated(0.52) benign(0.003) TCGA-EE-A20C-06 13 98674110 98674110 C T IPO5 3'UTR 0.46 TCGA-EE-A20C-06 14 100317270 100317272 GAC - EML1 In_Frame_Del p.D51del 0.40 TCGA-EE-A20C-06 14 102481641 102481641 G T DYNC1H1 Missense_Mutation p.G2405V 0.71 benign(0.004) TCGA-EE-A20C-06 14 102481642 102481642 G A DYNC1H1 Silent p.G2405G 0.71 TCGA-EE-A20C-06 14 104642788 104642788 C T KIF26A Silent p.T1221T 0.52 TCGA-EE-A20C-06 14 105419328 105419328 G A AHNAK2 Silent p.S820S 0.27 TCGA-EE-A20C-06 14 105420964 105420964 G A AHNAK2 Missense_Mutation p.P275L 0.45 benign(0.108) TCGA-EE-A20C-06 14 105995409 105995409 T C TMEM121 Missense_Mutation p.F80L 0.48 deleterious(0) probably_damaging(0.943) TCGA-EE-A20C-06 14 106329439 106329439 C T IGHJ6 Nonsense_Mutation p.W10* 0.31 TCGA-EE-A20C-06 14 106367021 106367021 C T IGHD1-14 5'Flank 0.41 TCGA-EE-A20C-06 14 106691775 106691775 C T IGHV3-21 Silent p.V83V 0.41 TCGA-EE-A20C-06 14 106845512 106845512 G A IGHV3-35 Silent p.N54N 0.46 TCGA-EE-A20C-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.16 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A20C-06 14 19563534 19563534 C T POTEG Missense_Mutation p.H350Y 0.36 tolerated(0.45) benign(0.241) TCGA-EE-A20C-06 14 20248501 20248501 C T OR4M1 Missense_Mutation p.T7I 0.47 deleterious(0) probably_damaging(0.974) TCGA-EE-A20C-06 14 20344870 20344870 C T OR4K2 Silent p.S148S 0.42 TCGA-EE-A20C-06 14 20345076 20345076 C T OR4K2 Missense_Mutation p.S217L 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 14 20388947 20388947 T A OR4K5 Missense_Mutation p.F61Y 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 14 20482618 20482618 G A OR4K14 Silent p.I245I 0.36 TCGA-EE-A20C-06 14 21269982 21269982 G A RNASE1 Silent p.V82V 0.40 TCGA-EE-A20C-06 14 21546603 21546603 T G ARHGEF40 Missense_Mutation p.D734E 0.35 tolerated(1) benign(0.075) TCGA-EE-A20C-06 14 22205018 22205018 G A TRAV4 Missense_Mutation p.D28N 0.42 deleterious(0.01) benign(0.279) TCGA-EE-A20C-06 14 22237063 22237063 C T TRAV6 Missense_Mutation p.S47F 0.44 deleterious(0.03) benign(0.039) TCGA-EE-A20C-06 14 22251683 22251683 G A TRAV7 Silent p.Q100Q 0.53 TCGA-EE-A20C-06 14 22309811 22309811 A C TRAV12-1 Missense_Mutation p.E64D 0.39 deleterious(0.02) benign(0.02) TCGA-EE-A20C-06 14 22356098 22356098 G A TRAV12-2 5'UTR 0.67 TCGA-EE-A20C-06 14 22362919 22362919 G A TRAV8-4 Missense_Mutation p.G17E 0.59 tolerated(0.16) benign(0.082) TCGA-EE-A20C-06 14 22476223 22476223 T C TRAV19 Silent p.T51T 0.50 TCGA-EE-A20C-06 14 22539424 22539424 C T TRAV22 Missense_Mutation p.S95F 0.53 deleterious(0) probably_damaging(0.929) TCGA-EE-A20C-06 14 23551020 23551020 C T ACIN1 Silent p.E212E 0.49 TCGA-EE-A20C-06 14 23855611 23855611 G A MYH6 Silent p.L1624L 0.53 TCGA-EE-A20C-06 14 24040606 24040606 C T JPH4 Missense_Mutation p.G445E 0.49 tolerated(1) benign(0.158) TCGA-EE-A20C-06 14 24607772 24607772 G A PSME1 Silent p.V224V 0.51 TCGA-EE-A20C-06 14 24656149 24656149 G C IPO4 Missense_Mutation p.L231V 0.49 deleterious(0) probably_damaging(0.936) TCGA-EE-A20C-06 14 24839800 24839800 G A NFATC4 Missense_Mutation p.R462K 0.52 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 14 24839801 24839801 G A NFATC4 Splice_Site p.X462_splice 0.52 TCGA-EE-A20C-06 14 28733939 28733939 G A BNIP3P1 RNA 0.56 TCGA-EE-A20C-06 14 31355241 31355241 G A COCH Silent p.S400S 0.51 TCGA-EE-A20C-06 14 33069994 33069994 C T AKAP6 Missense_Mutation p.P909L 0.33 tolerated(0.06) probably_damaging(0.988) TCGA-EE-A20C-06 14 33201778 33201778 C T AKAP6 Missense_Mutation p.S1040L 0.34 tolerated(0.11) probably_damaging(0.979) TCGA-EE-A20C-06 14 34247774 34247774 G A NPAS3 Silent p.L383L 0.47 TCGA-EE-A20C-06 14 34247775 34247775 G A NPAS3 Missense_Mutation p.D384N 0.47 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A20C-06 14 35036975 35036978 GTTC TA SNX6 Splice_Site p.X373_splice 0.39 TCGA-EE-A20C-06 14 37969155 37969155 G A MIPOL1 Silent p.Q358Q 0.42 TCGA-EE-A20C-06 14 38724414 38724414 C T CLEC14A Missense_Mutation p.E272K 0.53 tolerated(0.18) possibly_damaging(0.459) TCGA-EE-A20C-06 14 50619857 50619857 G A SOS2 Missense_Mutation p.H698Y 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 14 50626282 50626282 A G SOS2 Silent p.Y573Y 0.37 TCGA-EE-A20C-06 14 50626283 50626283 T A SOS2 Missense_Mutation p.Y573F 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 14 51382154 51382154 C T PYGL Missense_Mutation p.E435K 0.94 tolerated(0.06) benign(0.035) TCGA-EE-A20C-06 14 52485933 52485933 G A NID2 Silent p.F958F 0.85 TCGA-EE-A20C-06 14 52734689 52734689 C T PTGDR Missense_Mutation p.P53S 1.00 tolerated(0.65) benign(0.002) TCGA-EE-A20C-06 14 64408666 64408666 C T SYNE2 Silent p.L101L 0.95 TCGA-EE-A20C-06 14 64694402 64694402 T C SYNE2 3'Flank 0.96 TCGA-EE-A20C-06 14 65008860 65008860 C T HSPA2 Silent p.F431F 0.82 TCGA-EE-A20C-06 14 65032075 65032075 G A PPP1R36 Silent p.R90R 0.80 TCGA-EE-A20C-06 14 65259764 65259764 C T SPTB Missense_Mutation p.E873K 0.91 tolerated(0.99) benign(0.003) TCGA-EE-A20C-06 14 67671297 67671297 G A FAM71D Missense_Mutation p.E135K 0.40 tolerated(0.5) benign(0.057) TCGA-EE-A20C-06 14 68048918 68048918 G A PLEKHH1 Silent p.L1139L 0.46 TCGA-EE-A20C-06 14 69520769 69520769 G A DCAF5 Silent p.L878L 0.10 TCGA-EE-A20C-06 14 69818812 69818812 C T GALNT16 Missense_Mutation p.P535L 0.44 tolerated(0.27) benign(0.077) TCGA-EE-A20C-06 14 70442531 70442531 G A SMOC1 Missense_Mutation p.G160S 0.47 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A20C-06 14 70527562 70527562 C T SLC8A3 Missense_Mutation p.G627R 0.32 deleterious(0.05) benign(0.031) TCGA-EE-A20C-06 14 70634062 70634062 G A SLC8A3 Missense_Mutation p.R360C 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 14 70634974 70634974 C T SLC8A3 Missense_Mutation p.E56K 0.41 tolerated(0.42) benign(0.004) TCGA-EE-A20C-06 14 71051432 71051432 A G MED6 3'UTR 0.45 TCGA-EE-A20C-06 14 71215635 71215635 C T MAP3K9 Missense_Mutation p.E413K 0.44 deleterious(0.02) possibly_damaging(0.588) TCGA-EE-A20C-06 14 71555960 71555960 C T PCNX Silent p.F1830F 0.40 TCGA-EE-A20C-06 14 75179797 75179797 G A AC007956.1 Missense_Mutation p.L2F 0.47 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-EE-A20C-06 14 75329428 75329428 C T PROX2 Intron 0.46 TCGA-EE-A20C-06 14 75330268 75330268 C T PROX2 Silent p.G90G 0.50 TCGA-EE-A20C-06 14 75551114 75551114 C T NEK9 3'UTR 0.54 TCGA-EE-A20C-06 14 75551277 75551277 G A NEK9 Missense_Mutation p.P977L 0.42 tolerated_low_confidence(0.19) benign(0.024) TCGA-EE-A20C-06 14 75551278 75551278 G A NEK9 Missense_Mutation p.P977S 0.42 tolerated_low_confidence(0.8) benign(0) TCGA-EE-A20C-06 14 76905914 76905914 G A ESRRB Missense_Mutation p.R73H 0.10 tolerated(0.17) benign(0.004) TCGA-EE-A20C-06 14 77492302 77492302 G A IRF2BPL Missense_Mutation p.P612S 0.75 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 14 77950775 77950775 C T ISM2 Missense_Mutation p.G173E 0.41 tolerated(0.25) unknown(0) TCGA-EE-A20C-06 14 77951262 77951262 C T ISM2 Missense_Mutation p.V48I 0.40 tolerated_low_confidence(0.34) benign(0.05) TCGA-EE-A20C-06 14 77951263 77951263 C T ISM2 Splice_Site p.X48_splice 0.40 TCGA-EE-A20C-06 14 78365484 78365484 G A ADCK1 Silent p.E208E 0.44 TCGA-EE-A20C-06 14 80668739 80668739 C T DIO2 3'Flank 0.51 TCGA-EE-A20C-06 14 80669140 80669140 A G DIO2 Silent p.I274I 0.39 TCGA-EE-A20C-06 14 81259447 81259447 G A CEP128 Missense_Mutation p.T406I 0.29 deleterious(0.01) benign(0.189) TCGA-EE-A20C-06 14 81259448 81259448 T G CEP128 Missense_Mutation p.T406P 0.28 deleterious(0) possibly_damaging(0.635) TCGA-EE-A20C-06 14 81953731 81953731 T G SEL1L Intron 0.37 TCGA-EE-A20C-06 14 81964266 81964266 G A SEL1L Silent p.F366F 0.40 TCGA-EE-A20C-06 14 88477854 88477854 G A GPR65 Silent p.K221K 0.64 TCGA-EE-A20C-06 14 88652049 88652049 C T KCNK10 Missense_Mutation p.E488K 0.47 tolerated_low_confidence(0.08) probably_damaging(0.986) TCGA-EE-A20C-06 14 88729587 88729587 G A KCNK10 Missense_Mutation p.H121Y 0.42 tolerated(0.27) possibly_damaging(0.719) TCGA-EE-A20C-06 14 88737179 88737179 G A KCNK10 Intron 0.46 TCGA-EE-A20C-06 14 88945379 88945379 G A PTPN21 Missense_Mutation p.S799F 0.47 deleterious(0) possibly_damaging(0.883) TCGA-EE-A20C-06 14 89337973 89337973 A T TTC8 Missense_Mutation p.D377V 0.61 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 14 91059966 91059966 G A TTC7B Silent p.S657S 0.41 TCGA-EE-A20C-06 14 91059967 91059967 G A TTC7B Missense_Mutation p.S657F 0.40 deleterious(0) possibly_damaging(0.878) TCGA-EE-A20C-06 14 91755634 91755634 T A CCDC88C Missense_Mutation p.K1419I 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 14 91770158 91770158 C T CCDC88C Silent p.L1174L 0.42 TCGA-EE-A20C-06 14 92055886 92055886 C T CATSPERB Nonsense_Mutation p.W983* 0.50 TCGA-EE-A20C-06 14 92159580 92159580 C T CATSPERB Missense_Mutation p.D241N 0.43 tolerated(0.18) benign(0.11) TCGA-EE-A20C-06 14 92189404 92189404 T C CATSPERB Missense_Mutation p.N100D 0.49 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A20C-06 14 92258738 92258738 C T TC2N Silent p.L340L 0.44 TCGA-EE-A20C-06 14 92264694 92264694 C T TC2N Silent p.V229V 0.41 TCGA-EE-A20C-06 14 93118635 93118635 C T RIN3 Missense_Mutation p.P414L 0.50 tolerated(0.2) benign(0.038) TCGA-EE-A20C-06 14 93399099 93399099 C T CHGA Missense_Mutation p.S398F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 14 94120130 94120130 C T UNC79 Silent p.F1904F 0.43 TCGA-EE-A20C-06 14 94756792 94756792 C T SERPINA10 Missense_Mutation p.E47K 0.69 tolerated(0.69) benign(0.037) TCGA-EE-A20C-06 14 95085539 95085539 G T SERPINA3 Missense_Mutation p.W217C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 14 96157078 96157078 A G TCL1B Silent p.E56E 0.33 TCGA-EE-A20C-06 14 96706628 96706628 G A BDKRB2 Intron 0.45 TCGA-EE-A20C-06 14 96707441 96707441 T G BDKRB2 Missense_Mutation p.F259C 0.18 tolerated(0.05) probably_damaging(0.992) TCGA-EE-A20C-06 14 96707697 96707697 G T BDKRB2 Missense_Mutation p.W344C 0.39 tolerated(0.11) benign(0.428) TCGA-EE-A20C-06 15 100331792 100331792 G A AC090825.1 5'Flank 0.13 TCGA-EE-A20C-06 15 22473054 22473054 G A IGHV4OR15-8 Missense_Mutation p.H73Y 0.16 tolerated(1) benign(0) TCGA-EE-A20C-06 15 22473085 22473085 C T IGHV4OR15-8 Silent p.G62G 0.22 TCGA-EE-A20C-06 15 22868950 22868950 G C TUBGCP5 Missense_Mutation p.C941S 0.35 deleterious(0) probably_damaging(0.938) TCGA-EE-A20C-06 15 24921510 24921510 C T NPAP1 Missense_Mutation p.P166S 0.33 tolerated(0.43) benign(0.015) TCGA-EE-A20C-06 15 24921511 24921511 C T NPAP1 Missense_Mutation p.P166L 0.33 tolerated(0.65) benign(0.287) TCGA-EE-A20C-06 15 24921531 24921531 G A NPAP1 Missense_Mutation p.D173N 0.55 tolerated(0.27) benign(0.259) TCGA-EE-A20C-06 15 24922118 24922118 C T NPAP1 Silent p.T368T 0.50 TCGA-EE-A20C-06 15 24922625 24922625 C T NPAP1 Silent p.S537S 0.41 TCGA-EE-A20C-06 15 24922995 24922995 C T NPAP1 Missense_Mutation p.L661F 0.51 tolerated(0.25) benign(0.012) TCGA-EE-A20C-06 15 25227177 25227177 G A SNRPN 3'Flank 0.48 TCGA-EE-A20C-06 15 25315647 25315647 C T SNORD116-8 RNA 0.38 TCGA-EE-A20C-06 15 25315660 25315660 C T SNORD116-8 RNA 0.31 TCGA-EE-A20C-06 15 25417780 25417780 T C SNORD115-3 5'Flank 0.45 TCGA-EE-A20C-06 15 25457020 25457020 G A SNORD115-23 RNA 0.35 TCGA-EE-A20C-06 15 25458861 25458861 G A SNORD115-24 RNA 0.39 TCGA-EE-A20C-06 15 32450620 32450620 C T CHRNA7 Silent p.P231P 0.43 TCGA-EE-A20C-06 15 33022969 33022969 G A GREM1 Silent p.K26K 0.95 TCGA-EE-A20C-06 15 33840344 33840344 G A RYR3 Missense_Mutation p.E252K 0.90 probably_damaging(0.972) TCGA-EE-A20C-06 15 34015006 34015006 G A RYR3 Missense_Mutation p.G2237E 0.48 probably_damaging(1) TCGA-EE-A20C-06 15 35814332 35814332 G A DPH6 Intron 1.00 TCGA-EE-A20C-06 15 38765776 38765776 C T FAM98B Missense_Mutation p.S201L 1.00 tolerated(0.15) benign(0.004) TCGA-EE-A20C-06 15 40068732 40068732 C T FSIP1 Intron 0.90 TCGA-EE-A20C-06 15 40068733 40068733 C T FSIP1 Splice_Site 0.93 TCGA-EE-A20C-06 15 40094284 40094284 G T GPR176 Silent p.S199S 0.28 TCGA-EE-A20C-06 15 41962017 41962017 C T MGA Missense_Mutation p.P309S 0.96 tolerated(0.69) benign(0.001) TCGA-EE-A20C-06 15 42054352 42054352 G A MGA Silent p.K2512K 0.86 TCGA-EE-A20C-06 15 42280281 42280281 G A PLA2G4E Silent p.F599F 0.60 TCGA-EE-A20C-06 15 42287557 42287557 C T PLA2G4E Splice_Site p.X416_splice 0.76 TCGA-EE-A20C-06 15 43693968 43693968 C A TUBGCP4 Silent p.R551R 0.40 TCGA-EE-A20C-06 15 43762101 43762101 G A TP53BP1 Silent p.F448F 0.41 TCGA-EE-A20C-06 15 43814986 43814986 G A MAP1A Missense_Mutation p.E439K 1.00 probably_damaging(0.997) TCGA-EE-A20C-06 15 44903077 44903077 G A SPG11 Silent p.A1084A 0.96 TCGA-EE-A20C-06 15 48450222 48450222 C T MYEF2 Missense_Mutation p.R318H 0.09 tolerated(0.54) benign(0.124) TCGA-EE-A20C-06 15 50535044 50535044 G A HDC Nonsense_Mutation p.R468* 0.55 TCGA-EE-A20C-06 15 54008862 54008862 A C WDR72 Missense_Mutation p.V94G 0.27 deleterious(0) probably_damaging(0.961) TCGA-EE-A20C-06 15 55838819 55838819 G A PYGO1 Missense_Mutation p.S221F 0.27 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A20C-06 15 56122119 56122119 G T NEDD4 Silent p.T1240T 0.23 TCGA-EE-A20C-06 15 57356001 57356001 C T TCF12 Missense_Mutation p.P68S 0.60 tolerated(0.65) probably_damaging(0.966) TCGA-EE-A20C-06 15 57835965 57835965 C T CGNL1 Silent p.S1121S 0.97 TCGA-EE-A20C-06 15 58430789 58430789 G A AQP9 Missense_Mutation p.G9R 0.66 tolerated(0.6) benign(0) TCGA-EE-A20C-06 15 58471531 58471531 T C AQP9 Missense_Mutation p.F234L 0.36 tolerated(0.61) benign(0.02) TCGA-EE-A20C-06 15 60297153 60297153 G A FOXB1 5'UTR 0.38 TCGA-EE-A20C-06 15 60919563 60919563 C T RORA Missense_Mutation p.G4E 0.97 probably_damaging(0.931) TCGA-EE-A20C-06 15 63073355 63073355 C T TLN2 Missense_Mutation p.P1844L 0.43 tolerated(0.5) benign(0.005) TCGA-EE-A20C-06 15 65622078 65622078 G A IGDCC3 Silent p.F661F 0.59 TCGA-EE-A20C-06 15 66021923 66021923 G A DENND4A Silent p.I420I 0.45 TCGA-EE-A20C-06 15 67482774 67482774 C T SMAD3 Missense_Mutation p.P393L 0.91 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 15 68643713 68643713 C T ITGA11 Silent p.R259R 0.42 TCGA-EE-A20C-06 15 72432346 72432346 C T SENP8 Missense_Mutation p.H128Y 0.96 tolerated(0.51) probably_damaging(0.973) TCGA-EE-A20C-06 15 74284493 74284493 G A STOML1 Silent p.G24G 0.91 TCGA-EE-A20C-06 15 74327537 74327537 G A PML Intron 0.94 TCGA-EE-A20C-06 15 74336649 74336649 C T PML Missense_Mutation p.S650F 0.93 deleterious(0) probably_damaging(0.955) TCGA-EE-A20C-06 15 75195110 75195110 C A FAM219B Silent p.V149V 0.93 TCGA-EE-A20C-06 15 75647320 75647320 G A NEIL1 Missense_Mutation p.R373Q 0.40 tolerated_low_confidence(0.4) benign(0.003) TCGA-EE-A20C-06 15 75647321 75647321 G A NEIL1 Silent p.R373R 0.38 TCGA-EE-A20C-06 15 75890738 75890738 G A SNUPN Silent p.S348S 0.44 TCGA-EE-A20C-06 15 76075504 76075504 G A RN7SL319P 5'Flank 0.49 TCGA-EE-A20C-06 15 78633476 78633476 G C CRABP1 Missense_Mutation p.K54N 0.94 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A20C-06 15 78781069 78781069 C T IREB2 Missense_Mutation p.H678Y 0.41 tolerated(1) benign(0) TCGA-EE-A20C-06 15 81214393 81214393 C T KIAA1199 Missense_Mutation p.P706L 0.92 tolerated(0.34) benign(0.144) TCGA-EE-A20C-06 15 81636306 81636306 G A TMC3 Silent p.F533F 0.97 TCGA-EE-A20C-06 15 82335561 82335561 G A MEX3B Silent p.S550S 0.47 TCGA-EE-A20C-06 15 83328679 83328679 G A AP3B2 Missense_Mutation p.R1006W 0.51 tolerated(0.2) possibly_damaging(0.689) TCGA-EE-A20C-06 15 83527843 83527843 G A HOMER2 Silent p.A155A 0.49 TCGA-EE-A20C-06 15 85327838 85327838 C T ZNF592 Silent p.L644L 0.98 TCGA-EE-A20C-06 15 86822874 86822874 C T AGBL1 Missense_Mutation p.H648Y 0.96 deleterious(0.02) possibly_damaging(0.791) TCGA-EE-A20C-06 15 88483956 88483956 G A NTRK3 Silent p.I538I 0.41 TCGA-EE-A20C-06 15 89400227 89400227 C T ACAN Missense_Mutation p.P1471S 0.97 tolerated(0.18) possibly_damaging(0.829) TCGA-EE-A20C-06 15 89850735 89850735 G A FANCI Missense_Mutation p.G1189E 1.00 tolerated(0.24) possibly_damaging(0.662) TCGA-EE-A20C-06 15 90335500 90335500 C T ANPEP Missense_Mutation p.E807K 0.22 tolerated(0.52) benign(0.02) TCGA-EE-A20C-06 15 90631943 90631943 C T IDH2 Missense_Mutation p.G137E 0.98 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A20C-06 15 91182028 91182028 G A CRTC3 Missense_Mutation p.G510D 0.54 deleterious(0.02) benign(0.023) TCGA-EE-A20C-06 15 94986174 94986174 G A MCTP2 Silent p.E745E 0.93 TCGA-EE-A20C-06 15 96880662 96880662 G A NR2F2 Silent p.Q352Q 0.36 TCGA-EE-A20C-06 15 96880663 96880663 T C NR2F2 Missense_Mutation p.Y353H 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A20C-06 15 99672376 99672376 G A SYNM Missense_Mutation p.E1270K 0.96 deleterious(0.01) possibly_damaging(0.536) TCGA-EE-A20C-06 16 12145990 12145990 C T SNX29 Silent p.I345I 0.38 TCGA-EE-A20C-06 16 12618696 12618696 C T SNX29 Silent p.F772F 0.47 TCGA-EE-A20C-06 16 1272880 1272880 C T TPSG1 Missense_Mutation p.E95K 0.41 tolerated(0.06) benign(0.439) TCGA-EE-A20C-06 16 14755850 14755850 C T BFAR Silent p.F295F 0.43 TCGA-EE-A20C-06 16 1536522 1536522 G A PTX4 Silent p.F280F 0.43 TCGA-EE-A20C-06 16 15758664 15758664 C T NDE1 Missense_Mutation p.S10F 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 16 16177348 16177348 C T ABCC1 Silent p.L747L 0.48 TCGA-EE-A20C-06 16 16200668 16200668 G A ABCC1 Missense_Mutation p.A937T 0.57 tolerated(0.58) benign(0.004) TCGA-EE-A20C-06 16 1720746 1720746 C T CRAMP1L Missense_Mutation p.P1194L 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 16 17211549 17211549 G A XYLT1 Silent p.F837F 0.38 TCGA-EE-A20C-06 16 1877234 1877234 G A FAHD1 Missense_Mutation p.G2R 0.55 deleterious_low_confidence(0) benign(0.011) TCGA-EE-A20C-06 16 19516203 19516203 G A GDE1 Missense_Mutation p.P283L 0.55 tolerated(0.37) benign(0.014) TCGA-EE-A20C-06 16 19710899 19710899 A C C16orf62 Missense_Mutation p.K997Q 0.49 tolerated(0.22) benign(0.037) TCGA-EE-A20C-06 16 20043411 20043411 G A GPR139 Silent p.I236I 0.46 TCGA-EE-A20C-06 16 20043735 20043735 G A GPR139 Silent p.I128I 0.45 TCGA-EE-A20C-06 16 20084858 20084858 G A GPR139 Silent p.F27F 0.36 TCGA-EE-A20C-06 16 20335153 20335153 G A GP2 Silent p.L174L 0.37 TCGA-EE-A20C-06 16 20352594 20352594 G A UMOD Missense_Mutation p.P466S 0.35 tolerated(0.33) benign(0.125) TCGA-EE-A20C-06 16 20376749 20376749 C T PDILT Silent p.V410V 0.44 TCGA-EE-A20C-06 16 20430623 20430623 C T ACSM5 Silent p.A163A 0.46 TCGA-EE-A20C-06 16 20471532 20471532 C T ACSM2A Silent p.S32S 0.52 TCGA-EE-A20C-06 16 20494415 20494415 C T ACSM2A Silent p.F515F 0.43 TCGA-EE-A20C-06 16 20548635 20548635 C T ACSM2B Missense_Mutation p.R560Q 0.42 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 16 20955837 20955837 C T DNAH3 Missense_Mutation p.G3831E 0.38 deleterious(0.03) benign(0.072) TCGA-EE-A20C-06 16 20966287 20966287 C T DNAH3 Missense_Mutation p.R3640Q 0.45 deleterious(0) probably_damaging(0.967) TCGA-EE-A20C-06 16 20975263 20975263 C T DNAH3 Missense_Mutation p.E3315K 0.51 deleterious(0) possibly_damaging(0.626) TCGA-EE-A20C-06 16 20996655 20996655 C T DNAH3 Missense_Mutation p.R2470Q 0.66 deleterious(0) probably_damaging(0.983) TCGA-EE-A20C-06 16 21031051 21031051 T A DNAH3 Nonsense_Mutation p.K1973* 0.33 TCGA-EE-A20C-06 16 21049100 21049100 C T DNAH3 Missense_Mutation p.D1645N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 16 21080784 21080784 C T DNAH3 Silent p.R1111R 0.45 TCGA-EE-A20C-06 16 21210173 21210173 G T ZP2 Silent p.A646A 0.29 TCGA-EE-A20C-06 16 21261902 21261902 G A ANKS4B Missense_Mutation p.E339K 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A20C-06 16 22269865 22269867 CCA TTG EEF2K Nonsense_Mutation p.Q361* 0.10 TCGA-EE-A20C-06 16 2285285 2285285 C T E4F1 Silent p.I689I 0.46 TCGA-EE-A20C-06 16 23444941 23444941 G A COG7 Silent p.S245S 0.63 TCGA-EE-A20C-06 16 2347481 2347481 C T ABCA3 Nonsense_Mutation p.W704* 0.37 TCGA-EE-A20C-06 16 23489758 23489758 C T GGA2 Missense_Mutation p.G408D 0.39 tolerated(0.15) benign(0.002) TCGA-EE-A20C-06 16 23489759 23489759 C T GGA2 Missense_Mutation p.G408S 0.38 tolerated(0.24) benign(0.002) TCGA-EE-A20C-06 16 24372924 24372924 C T CACNG3 Nonsense_Mutation p.R230* 0.56 TCGA-EE-A20C-06 16 24581169 24581169 C T RBBP6 Missense_Mutation p.P1053L 0.53 deleterious_low_confidence(0) unknown(0) TCGA-EE-A20C-06 16 2512234 2512234 G A C16orf59 Silent p.Q248Q 0.52 TCGA-EE-A20C-06 16 25255427 25255427 A G ZKSCAN2 Missense_Mutation p.F554L 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 16 27244394 27244394 T C NSMCE1 Silent p.K137K 0.49 TCGA-EE-A20C-06 16 27374571 27374571 C T IL4R Missense_Mutation p.P633L 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 16 27374756 27374756 C T IL4R Missense_Mutation p.P695S 0.23 tolerated(0.93) benign(0.006) TCGA-EE-A20C-06 16 27504563 27504563 G A GTF3C1 Missense_Mutation p.R945C 0.33 deleterious(0) probably_damaging(0.991) TCGA-EE-A20C-06 16 27506539 27506539 C T GTF3C1 Silent p.T875T 0.40 TCGA-EE-A20C-06 16 2817906 2817906 C T SRRM2 Silent p.S2459S 0.47 TCGA-EE-A20C-06 16 2834970 2834970 G A PRSS33 Intron 0.25 TCGA-EE-A20C-06 16 28619821 28619821 G A SULT1A1 Silent p.F84F 0.57 TCGA-EE-A20C-06 16 28841344 28841344 G A ATXN2L Silent p.Q333Q 0.30 TCGA-EE-A20C-06 16 28841346 28841346 G A ATXN2L Missense_Mutation p.G334D 0.30 tolerated(0.11) benign(0.311) TCGA-EE-A20C-06 16 28855357 28855357 G A TUFM Nonsense_Mutation p.R330* 0.48 TCGA-EE-A20C-06 16 28915062 28915062 G A ATP2A1 Intron 0.52 TCGA-EE-A20C-06 16 30198142 30198142 G A CORO1A Nonsense_Mutation p.W109* 0.49 TCGA-EE-A20C-06 16 30537210 30537210 G A ZNF768 Missense_Mutation p.P84L 0.47 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-EE-A20C-06 16 30537211 30537211 G A ZNF768 Missense_Mutation p.P84S 0.50 deleterious_low_confidence(0) benign(0.112) TCGA-EE-A20C-06 16 30721292 30721292 G T SRCAP Missense_Mutation p.R326L 0.33 unknown(0) TCGA-EE-A20C-06 16 30740785 30740785 C T SRCAP Nonsense_Mutation p.Q2007* 0.41 TCGA-EE-A20C-06 16 31092887 31092887 G A ZNF646 Missense_Mutation p.E1748K 0.49 tolerated(0.62) probably_damaging(0.969) TCGA-EE-A20C-06 16 31308949 31308949 G T ITGAM Missense_Mutation p.V491L 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 16 31478223 31478223 C T ARMC5 3'UTR 0.60 TCGA-EE-A20C-06 16 336885 336885 G A PDIA2 Silent p.L491L 0.67 TCGA-EE-A20C-06 16 3406126 3406126 C T OR2C1 Silent p.F62F 0.47 TCGA-EE-A20C-06 16 47723057 47723057 G A PHKB Silent p.L912L 0.92 TCGA-EE-A20C-06 16 4935161 4935161 G A PPL Silent p.N1165N 0.46 TCGA-EE-A20C-06 16 4935162 4935162 T A PPL Missense_Mutation p.N1165I 0.46 tolerated(0.05) probably_damaging(0.979) TCGA-EE-A20C-06 16 49671485 49671485 G A ZNF423 Silent p.F526F 0.96 TCGA-EE-A20C-06 16 55516911 55516911 G A MMP2 Missense_Mutation p.G82R 0.86 tolerated(0.06) possibly_damaging(0.709) TCGA-EE-A20C-06 16 55516912 55516912 G A MMP2 Missense_Mutation p.G82E 0.85 deleterious(0) possibly_damaging(0.596) TCGA-EE-A20C-06 16 55725862 55725862 C T SLC6A2 Silent p.F272F 0.79 TCGA-EE-A20C-06 16 55862744 55862744 C T CES1 Silent p.R65R 0.68 TCGA-EE-A20C-06 16 55886805 55886805 G A CES5A Nonsense_Mutation p.R450* 0.87 TCGA-EE-A20C-06 16 56704472 56704472 C T MT1H Missense_Mutation p.S28F 1.00 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 16 570473 570473 G A RAB11FIP3 Silent p.L677L 0.43 TCGA-EE-A20C-06 16 57238576 57238576 C T RSPRY1 Silent p.I2I 0.89 TCGA-EE-A20C-06 16 57467961 57467961 G A CIAPIN1 Missense_Mutation p.P184L 0.94 tolerated(0.06) benign(0.001) TCGA-EE-A20C-06 16 57467962 57467962 G A CIAPIN1 Missense_Mutation p.P184S 0.96 tolerated(0.17) benign(0.002) TCGA-EE-A20C-06 16 57752309 57752309 G A CCDC135 Silent p.L376L 0.94 TCGA-EE-A20C-06 16 57931767 57931767 A G CNGB1 Silent p.L1010L 0.90 TCGA-EE-A20C-06 16 58768098 58768098 C T GOT2 Missense_Mutation p.G12E 1.00 tolerated(0.09) benign(0.346) TCGA-EE-A20C-06 16 601531 601531 C T CAPN15 Missense_Mutation p.P738S 0.42 deleterious(0) probably_damaging(0.985) TCGA-EE-A20C-06 16 601532 601532 C T CAPN15 Missense_Mutation p.P738L 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 16 61689619 61689619 G A CDH8 Missense_Mutation p.S554F 0.33 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A20C-06 16 66600862 66600862 T A CMTM1 Intron 1.00 TCGA-EE-A20C-06 16 66918541 66918541 C T PDP2 Silent p.S118S 0.94 TCGA-EE-A20C-06 16 66974489 66974489 C T CES2 Missense_Mutation p.S300L 1.00 tolerated(0.13) benign(0.111) TCGA-EE-A20C-06 16 70891707 70891707 C T HYDIN Missense_Mutation p.E4066K 0.42 possibly_damaging(0.81) TCGA-EE-A20C-06 16 70908326 70908326 C T HYDIN Silent p.E3610E 0.29 TCGA-EE-A20C-06 16 72827165 72827165 G A ZFHX3 Missense_Mutation p.P3139L 0.92 unknown(0) TCGA-EE-A20C-06 16 72993163 72993163 G A ZFHX3 Silent p.V294V 0.91 TCGA-EE-A20C-06 16 7382980 7382980 G A RBFOX1 5'UTR 0.46 TCGA-EE-A20C-06 16 74972116 74972116 G A WDR59 Missense_Mutation p.H195Y 0.91 tolerated(0.06) benign(0.159) TCGA-EE-A20C-06 16 76486640 76486640 G A CNTNAP4 Missense_Mutation p.G363E 0.86 tolerated(0.06) possibly_damaging(0.651) TCGA-EE-A20C-06 16 77465432 77465432 C T ADAMTS18 Silent p.R85R 0.92 TCGA-EE-A20C-06 16 81971413 81971413 G A PLCG2 Missense_Mutation p.G1035S 1.00 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 16 81971414 81971414 G A PLCG2 Missense_Mutation p.G1035D 1.00 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 16 84229901 84229901 G A ADAD2 Missense_Mutation p.G566D 0.89 tolerated(0.19) benign(0.03) TCGA-EE-A20C-06 16 88889034 88889034 G A GALNS Missense_Mutation p.H443Y 0.94 deleterious(0) probably_damaging(0.968) TCGA-EE-A20C-06 16 89294534 89294534 G A ZNF778 Missense_Mutation p.G585E 0.96 deleterious(0.03) probably_damaging(1) TCGA-EE-A20C-06 16 89347832 89347832 A - ANKRD11 Frame_Shift_Del p.T1707Rfs*12 0.47 TCGA-EE-A20C-06 16 9934906 9934906 C T GRIN2A Missense_Mutation p.D462N 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 17 10250066 10250066 C T MYH13 Silent p.L398L 0.35 TCGA-EE-A20C-06 17 10258090 10258090 C T MYH13 Silent p.L304L 0.59 TCGA-EE-A20C-06 17 10300235 10300235 G A MYH8 Missense_Mutation p.S1416F 0.64 deleterious(0) benign(0.247) TCGA-EE-A20C-06 17 10317709 10317709 G A MYH8 Silent p.L300L 0.17 TCGA-EE-A20C-06 17 10351389 10351389 G A MYH4 Nonsense_Mutation p.Q1571* 0.32 TCGA-EE-A20C-06 17 10400685 10400685 C T MYH1 Missense_Mutation p.E1484K 0.84 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 17 10401113 10401113 C T MYH1 Missense_Mutation p.D1435N 0.55 deleterious(0) probably_damaging(0.967) TCGA-EE-A20C-06 17 10406346 10406346 C T MYH1 Missense_Mutation p.E971K 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 17 10409372 10409372 G A MYH1 Silent p.P671P 0.32 TCGA-EE-A20C-06 17 10412913 10412913 G A MYH1 Silent p.F492F 0.30 TCGA-EE-A20C-06 17 10419324 10419324 C T MYH1 Missense_Mutation p.A142T 0.67 deleterious(0.01) possibly_damaging(0.858) TCGA-EE-A20C-06 17 10427854 10427854 C T MYH2 Missense_Mutation p.E1702K 0.61 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A20C-06 17 11511509 11511509 G A DNAH9 Missense_Mutation p.D161N 0.30 possibly_damaging(0.842) TCGA-EE-A20C-06 17 12656300 12656300 C T MYOCD Silent p.F565F 0.67 TCGA-EE-A20C-06 17 12666655 12666655 G A MYOCD Silent p.G885G 0.59 TCGA-EE-A20C-06 17 12832316 12832316 C T ARHGAP44 Missense_Mutation p.L179F 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 17 12862145 12862145 C T ARHGAP44 Missense_Mutation p.P485L 0.75 tolerated(0.14) benign(0.005) TCGA-EE-A20C-06 17 14683360 14683360 G A AC005863.1 RNA 0.36 TCGA-EE-A20C-06 17 1538795 1538795 G A SCARF1 Missense_Mutation p.R584W 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 17 16455996 16455996 T C ZNF287 Missense_Mutation p.K487R 0.43 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A20C-06 17 16527814 16527814 G A ZNF624 Missense_Mutation p.P129L 0.61 tolerated(0.77) benign(0.001) TCGA-EE-A20C-06 17 16537259 16537259 G A ZNF624 Missense_Mutation p.S98F 0.57 tolerated(0.08) benign(0.006) TCGA-EE-A20C-06 17 177264 177264 C T RPH3AL Missense_Mutation p.R24Q 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A20C-06 17 17921751 17921751 G A ATPAF2 3'UTR 0.62 TCGA-EE-A20C-06 17 18682579 18682579 G A FBXW10 Missense_Mutation p.A1043T 0.89 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 17 18880953 18880953 C T FAM83G Missense_Mutation p.E676K 0.18 tolerated(0.1) benign(0.244) TCGA-EE-A20C-06 17 21731348 21731348 G A UBBP4 Intron 0.36 TCGA-EE-A20C-06 17 26090025 26090025 C T NOS2 Missense_Mutation p.E867K 0.39 tolerated(0.09) possibly_damaging(0.895) TCGA-EE-A20C-06 17 26854296 26854296 G A FOXN1 Missense_Mutation p.V206I 0.69 tolerated_low_confidence(0.09) benign(0.017) TCGA-EE-A20C-06 17 26854336 26854336 C T FOXN1 Missense_Mutation p.P219L 0.32 deleterious(0.02) benign(0.416) TCGA-EE-A20C-06 17 26969291 26969291 A G KIAA0100 Splice_Site p.X192_splice 0.21 TCGA-EE-A20C-06 17 27889813 27889813 G A ABHD15 Silent p.H391H 0.26 TCGA-EE-A20C-06 17 27958627 27958627 G A SSH2 Silent p.L1168L 0.53 TCGA-EE-A20C-06 17 2808603 2808603 G A RAP1GAP2 Missense_Mutation p.D36N 0.71 tolerated(0.65) benign(0.001) TCGA-EE-A20C-06 17 28643597 28643597 G A TMIGD1 3'UTR 0.88 TCGA-EE-A20C-06 17 28645885 28645894 AACACATGCA - TMIGD1 Frame_Shift_Del p.A227* 0.38 TCGA-EE-A20C-06 17 29556131 29556131 C T NF1 Missense_Mutation p.S833F 0.69 tolerated(0.25) benign(0) TCGA-EE-A20C-06 17 3030132 3030132 A G OR1G1 Silent p.F238F 0.35 TCGA-EE-A20C-06 17 30965783 30965783 G A MYO1D Missense_Mutation p.P889L 0.44 tolerated(0.07) benign(0.178) TCGA-EE-A20C-06 17 3336173 3336173 G A OR1E2 Silent p.F321F 0.31 TCGA-EE-A20C-06 17 33507614 33507614 C T UNC45B Silent p.I766I 0.38 TCGA-EE-A20C-06 17 33747358 33747358 G C SLFN12 Missense_Mutation p.T361R 0.50 tolerated(0.62) benign(0.036) TCGA-EE-A20C-06 17 34072304 34072304 C T GAS2L2 Missense_Mutation p.A738T 0.35 tolerated(0.22) benign(0.084) TCGA-EE-A20C-06 17 34072305 34072305 C T GAS2L2 Silent p.E737E 0.34 TCGA-EE-A20C-06 17 34072969 34072969 C T GAS2L2 Missense_Mutation p.G516E 0.46 tolerated(0.09) benign(0.087) TCGA-EE-A20C-06 17 34311487 34311487 C A CCL14 Silent p.G43G 0.09 TCGA-EE-A20C-06 17 36065052 36065052 G A HNF1B Missense_Mutation p.S404L 0.37 deleterious(0.04) benign(0.278) TCGA-EE-A20C-06 17 36474633 36474633 C T MRPL45 Missense_Mutation p.P170L 0.41 tolerated(0.05) probably_damaging(0.99) TCGA-EE-A20C-06 17 37009978 37009978 A G RPL23 5'UTR 0.33 TCGA-EE-A20C-06 17 37576034 37576034 G A MED1 Silent p.I411I 0.44 TCGA-EE-A20C-06 17 37672045 37672045 C T CDK12 Nonsense_Mutation p.Q944* 0.53 TCGA-EE-A20C-06 17 37880219 37880219 T A ERBB2 Missense_Mutation p.L755M 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 17 37882045 37882045 G A ERBB2 Silent p.K937K 0.33 TCGA-EE-A20C-06 17 37988405 37988405 C T IKZF3 Splice_Site p.X3_splice 0.36 TCGA-EE-A20C-06 17 38132228 38132228 T G GSDMA Missense_Mutation p.I358S 0.56 deleterious(0) possibly_damaging(0.895) TCGA-EE-A20C-06 17 3832734 3832734 G A ATP2A3 Missense_Mutation p.S917L 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 17 38856510 38856510 T G KRT24 Missense_Mutation p.Q327H 0.46 deleterious(0.01) possibly_damaging(0.774) TCGA-EE-A20C-06 17 38926344 38926344 C T KRT26 Missense_Mutation p.G238R 0.48 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 17 39279796 39279796 G A KRTAP4-12 Silent p.P193P 0.61 TCGA-EE-A20C-06 17 39643898 39643898 T A KRT36 Missense_Mutation p.D264V 0.42 deleterious(0) possibly_damaging(0.697) TCGA-EE-A20C-06 17 39680682 39680682 C T KRT19 Silent p.E257E 0.45 TCGA-EE-A20C-06 17 39728022 39728022 C T KRT9 Missense_Mutation p.G75R 0.83 tolerated_low_confidence(0.34) unknown(0) TCGA-EE-A20C-06 17 39786735 39786735 T C KRT42P RNA 0.60 TCGA-EE-A20C-06 17 39884019 39884019 C T HAP1 Missense_Mutation p.E424K 0.54 tolerated(0.12) benign(0.071) TCGA-EE-A20C-06 17 39921256 39921256 C T JUP Missense_Mutation p.E325K 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 17 41247929 41247929 G A BRCA1 Nonsense_Mutation p.Q202* 0.41 TCGA-EE-A20C-06 17 42335459 42335459 A T SLC4A1 Missense_Mutation p.Y393N 0.48 deleterious(0) probably_damaging(0.982) TCGA-EE-A20C-06 17 42397637 42397637 G A SLC25A39 Silent p.P297P 0.44 TCGA-EE-A20C-06 17 42991117 42991117 G A GFAP Silent p.F199F 0.42 TCGA-EE-A20C-06 17 42991119 42991119 A C GFAP Missense_Mutation p.F199V 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 17 43333349 43333349 C T SPATA32 Missense_Mutation p.G67E 0.46 tolerated(1) benign(0.001) TCGA-EE-A20C-06 17 43333350 43333350 C T SPATA32 Missense_Mutation p.G67R 0.44 tolerated(0.51) benign(0.037) TCGA-EE-A20C-06 17 43367999 43367999 G T MAP3K14 RNA 0.59 TCGA-EE-A20C-06 17 43474071 43474071 G A ARHGAP27 Silent p.P338P 0.56 TCGA-EE-A20C-06 17 43481655 43481655 G T ARHGAP27 Missense_Mutation p.P146T 0.38 tolerated(0.24) benign(0.04) TCGA-EE-A20C-06 17 4455508 4455508 G A MYBBP1A Missense_Mutation p.R273C 0.61 deleterious(0.01) possibly_damaging(0.888) TCGA-EE-A20C-06 17 4461906 4461906 C T GGT6 Missense_Mutation p.E296K 0.67 deleterious(0.01) benign(0.283) TCGA-EE-A20C-06 17 44847226 44847226 C T WNT3 Missense_Mutation p.E171K 0.41 tolerated(0.09) benign(0.145) TCGA-EE-A20C-06 17 4545010 4545010 G A ALOX15 Intron 0.65 TCGA-EE-A20C-06 17 45915737 45915737 C T SCRN2 Missense_Mutation p.D340N 0.47 deleterious(0.01) possibly_damaging(0.533) TCGA-EE-A20C-06 17 4648003 4648003 G A ZMYND15 Silent p.R589R 0.16 TCGA-EE-A20C-06 17 47044511 47044511 G A GIP Silent p.F28F 0.48 TCGA-EE-A20C-06 17 4713297 4713297 A T PLD2 Missense_Mutation p.H278L 0.68 tolerated(0.06) benign(0.007) TCGA-EE-A20C-06 17 4721629 4721629 T C PLD2 Missense_Mutation p.V653A 0.56 deleterious(0) possibly_damaging(0.692) TCGA-EE-A20C-06 17 47583675 47583675 G A NGFR Missense_Mutation p.D75N 0.45 tolerated(0.05) benign(0.164) TCGA-EE-A20C-06 17 4841674 4841674 G A SLC25A11 Silent p.L199L 0.29 TCGA-EE-A20C-06 17 48603457 48603457 G A MYCBPAP Silent p.R709R 0.37 TCGA-EE-A20C-06 17 48603458 48603458 G A MYCBPAP Missense_Mutation p.E710K 0.39 tolerated(0.3) benign(0.023) TCGA-EE-A20C-06 17 48625655 48625655 C T SPATA20 Missense_Mutation p.S46F 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.683) TCGA-EE-A20C-06 17 48703971 48703971 C T CACNA1G Silent p.L2331L 0.36 TCGA-EE-A20C-06 17 48704169 48704169 C T CACNA1G 3'UTR 0.43 TCGA-EE-A20C-06 17 4927149 4927149 C G KIF1C Silent p.P1005P 0.21 TCGA-EE-A20C-06 17 4927150 4927150 C T KIF1C Missense_Mutation p.P1006S 0.21 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A20C-06 17 49710991 49710991 G A CA10 Silent p.L270L 0.37 TCGA-EE-A20C-06 17 5051934 5051934 G A USP6 Missense_Mutation p.G839R 0.54 tolerated_low_confidence(0.15) probably_damaging(1) TCGA-EE-A20C-06 17 531397 531397 C G VPS53 Missense_Mutation p.Q254H 0.67 tolerated(0.09) benign(0.018) TCGA-EE-A20C-06 17 5378037 5378037 G A DERL2 Silent p.F229F 0.29 TCGA-EE-A20C-06 17 53852169 53852169 C T PCTP Silent p.F176F 0.42 TCGA-EE-A20C-06 17 5424894 5424894 C T NLRP1 Missense_Mutation p.E1245K 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A20C-06 17 60062025 60062025 G A MED13 Missense_Mutation p.P893L 0.48 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A20C-06 17 60062026 60062026 G A MED13 Missense_Mutation p.P893S 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20C-06 17 60072719 60072719 C T MED13 Missense_Mutation p.V659M 0.44 deleterious(0.05) benign(0.229) TCGA-EE-A20C-06 17 6012932 6012932 C T WSCD1 Silent p.F285F 0.60 TCGA-EE-A20C-06 17 602612 602612 C T VPS53 Silent p.A59A 0.57 TCGA-EE-A20C-06 17 60766290 60766290 G A MRC2 Silent p.E1101E 0.40 TCGA-EE-A20C-06 17 60837199 60837199 G A MARCH10 Missense_Mutation p.P127S 0.47 tolerated(0.1) benign(0.063) TCGA-EE-A20C-06 17 61466676 61466676 G A TANC2 Missense_Mutation p.R867Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 17 61562671 61562671 G A ACE Missense_Mutation p.E666K 0.47 tolerated(0.59) benign(0.044) TCGA-EE-A20C-06 17 61613508 61613508 G A KCNH6 Intron 0.42 TCGA-EE-A20C-06 17 61833897 61833897 C T CCDC47 Missense_Mutation p.D257N 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 17 61895645 61895645 C T DDX42 Missense_Mutation p.P902S 0.30 tolerated_low_confidence(0.69) benign(0) TCGA-EE-A20C-06 17 61987878 61987878 C T CSHL1 Missense_Mutation p.E70K 0.50 tolerated(0.06) benign(0.013) TCGA-EE-A20C-06 17 62782740 62782740 G A hsa-mir-6080 5'Flank 0.67 TCGA-EE-A20C-06 17 62856232 62856232 G A LRRC37A3 Silent p.F1344F 0.46 TCGA-EE-A20C-06 17 62856737 62856737 T A LRRC37A3 Missense_Mutation p.K1176I 0.42 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 17 62856739 62856739 C T LRRC37A3 Silent p.Q1175Q 0.43 TCGA-EE-A20C-06 17 64059110 64059110 C T CEP112 Missense_Mutation p.E349K 0.37 tolerated(0.08) possibly_damaging(0.848) TCGA-EE-A20C-06 17 65105655 65105655 G A HELZ Missense_Mutation p.P1356S 0.37 tolerated_low_confidence(0.31) probably_damaging(0.986) TCGA-EE-A20C-06 17 65105656 65105656 G A HELZ Silent p.I1355I 0.37 TCGA-EE-A20C-06 17 66978774 66978774 G A ABCA9 Missense_Mutation p.S1550F 0.40 deleterious(0.03) benign(0.413) TCGA-EE-A20C-06 17 6718610 6718610 G A TEKT1 Silent p.A167A 0.24 TCGA-EE-A20C-06 17 67189349 67189349 A G ABCA10 Missense_Mutation p.F561S 0.38 tolerated(0.07) benign(0.212) TCGA-EE-A20C-06 17 68171246 68171246 C T KCNJ2 Silent p.A22A 0.37 TCGA-EE-A20C-06 17 695284 695284 T A RNMTL1 Nonsense_Mutation p.L413* 0.27 TCGA-EE-A20C-06 17 7095250 7095250 G A DLG4 Silent p.I689I 0.62 TCGA-EE-A20C-06 17 7189135 7189135 A C SLC2A4 Missense_Mutation p.S412R 0.66 deleterious(0.01) benign(0.122) TCGA-EE-A20C-06 17 7226169 7226169 G A NEURL4 Silent p.V870V 0.25 TCGA-EE-A20C-06 17 7251270 7251270 G A ACAP1 Missense_Mutation p.R458Q 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 17 72878757 72878757 C T FADS6 Silent p.G147G 0.50 TCGA-EE-A20C-06 17 72926589 72926589 G A OTOP2 Missense_Mutation p.E287K 0.12 tolerated(0.82) benign(0.077) TCGA-EE-A20C-06 17 74003218 74003218 G A EVPL Missense_Mutation p.S2023F 0.51 tolerated(0.71) benign(0.068) TCGA-EE-A20C-06 17 74079831 74079831 C T EXOC7 Silent p.K702K 0.44 TCGA-EE-A20C-06 17 74079832 74079832 C T EXOC7 Splice_Site p.X702_splice 0.43 TCGA-EE-A20C-06 17 7416903 7416903 C T POLR2A Missense_Mutation p.P1774S 0.31 unknown(0) TCGA-EE-A20C-06 17 74288341 74288341 G A QRICH2 Nonsense_Mutation p.Q657* 0.49 TCGA-EE-A20C-06 17 74391899 74391899 G A UBE2O Silent p.A951A 0.38 TCGA-EE-A20C-06 17 74639742 74639742 G A ST6GALNAC1 5'UTR 0.47 TCGA-EE-A20C-06 17 74639743 74639743 G A ST6GALNAC1 5'UTR 0.44 TCGA-EE-A20C-06 17 7558868 7558868 C T ATP1B2 Silent p.L211L 0.64 TCGA-EE-A20C-06 17 76354883 76354883 C T SOCS3 Silent p.E98E 0.33 TCGA-EE-A20C-06 17 76533467 76533467 G A DNAH17 Silent p.L925L 0.37 TCGA-EE-A20C-06 17 7667200 7667200 C T DNAH2 Silent p.I1010I 0.29 TCGA-EE-A20C-06 17 77082217 77082217 C T ENGASE Missense_Mutation p.S673F 0.43 deleterious(0.05) possibly_damaging(0.646) TCGA-EE-A20C-06 17 77082235 77082235 C T ENGASE Missense_Mutation p.P679L 0.54 tolerated(0.13) benign(0.002) TCGA-EE-A20C-06 17 77758489 77758489 C T CBX2 Missense_Mutation p.S416F 0.39 deleterious(0.02) benign(0.11) TCGA-EE-A20C-06 17 7907263 7907263 C T GUCY2D Missense_Mutation p.S272F 0.67 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A20C-06 17 79094802 79094802 C T AATK Silent p.R978R 0.58 TCGA-EE-A20C-06 17 79633587 79633587 G A OXLD1 Silent p.V7V 1.00 TCGA-EE-A20C-06 17 79914583 79914583 G A NOTUM Nonsense_Mutation p.Q311* 1.00 TCGA-EE-A20C-06 17 80046692 80046692 G A FASN Missense_Mutation p.H789Y 0.87 deleterious(0.04) benign(0.106) TCGA-EE-A20C-06 17 8046714 8046714 G A PER1 Missense_Mutation p.P981L 0.60 deleterious(0) possibly_damaging(0.882) TCGA-EE-A20C-06 17 80763833 80763833 A C TBCD Missense_Mutation p.T345P 0.95 tolerated(0.28) benign(0.003) TCGA-EE-A20C-06 17 80763835 80763835 C T TBCD Silent p.T345T 0.95 TCGA-EE-A20C-06 17 8424604 8424604 C T MYH10 Splice_Site p.X653_splice 0.29 TCGA-EE-A20C-06 17 8738707 8738707 G A PIK3R6 Silent p.I176I 0.54 TCGA-EE-A20C-06 17 9739745 9739745 G A GLP2R Missense_Mutation p.G112E 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 17 9808472 9808472 A C RCVRN Missense_Mutation p.L9R 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 18 12449891 12449891 A G SPIRE1 Missense_Mutation p.S673P 0.30 tolerated(0.16) benign(0.02) TCGA-EE-A20C-06 18 13731719 13731719 A C RNMT Missense_Mutation p.K68T 0.65 tolerated_low_confidence(0.06) benign(0.118) TCGA-EE-A20C-06 18 13742516 13742516 C T RNMT Missense_Mutation p.S335L 0.29 deleterious(0.01) possibly_damaging(0.752) TCGA-EE-A20C-06 18 13884598 13884598 G A MC2R 3'UTR 0.68 TCGA-EE-A20C-06 18 13885518 13885518 T G MC2R 5'UTR 0.50 TCGA-EE-A20C-06 18 14183687 14183687 G A ANKRD20A5P RNA 0.09 TCGA-EE-A20C-06 18 19996265 19996265 G A CTAGE1 Missense_Mutation p.L504F 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-EE-A20C-06 18 21124964 21124964 G A NPC1 Missense_Mutation p.S636F 0.70 deleterious(0) probably_damaging(0.928) TCGA-EE-A20C-06 18 21883641 21883641 G A OSBPL1A Silent p.S378S 0.65 TCGA-EE-A20C-06 18 25570083 25570083 G A CDH2 Nonsense_Mutation p.R526* 0.32 TCGA-EE-A20C-06 18 25616532 25616532 C T CDH2 Intron 0.66 TCGA-EE-A20C-06 18 28574093 28574093 G A DSC3 3'UTR 0.76 TCGA-EE-A20C-06 18 28574274 28574274 T - DSC3 Frame_Shift_Del p.N853Tfs*27 0.32 TCGA-EE-A20C-06 18 28598186 28598186 C T DSC3 Missense_Mutation p.E372K 0.36 deleterious(0.02) benign(0.403) TCGA-EE-A20C-06 18 28711482 28711482 A C DSC1 Intron 0.44 TCGA-EE-A20C-06 18 28934455 28934455 G T DSG1 Nonsense_Mutation p.E766* 0.57 TCGA-EE-A20C-06 18 28935179 28935179 G A DSG1 Missense_Mutation p.G1007E 0.33 tolerated(0.18) probably_damaging(0.972) TCGA-EE-A20C-06 18 29205562 29205562 C T B4GALT6 3'UTR 0.38 TCGA-EE-A20C-06 18 29435648 29435648 A T TRAPPC8 Missense_Mutation p.F1104Y 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-EE-A20C-06 18 29795083 29795083 G A MEP1B Missense_Mutation p.G540R 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 18 29795084 29795084 G A MEP1B Missense_Mutation p.G540E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 18 30092744 30092744 C T WBP11P1 RNA 0.52 TCGA-EE-A20C-06 18 31324796 31324796 A G ASXL3 Missense_Mutation p.T1662A 0.48 benign(0.002) TCGA-EE-A20C-06 18 31324895 31324895 G A ASXL3 Missense_Mutation p.A1695T 0.27 benign(0.008) TCGA-EE-A20C-06 18 3134663 3134663 G A MYOM1 Missense_Mutation p.P790L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 18 33713200 33713200 G A ELP2 Splice_Site p.X47_splice 0.54 TCGA-EE-A20C-06 18 34205568 34205568 G A FHOD3 Missense_Mutation p.G351E 0.29 tolerated(0.16) benign(0.022) TCGA-EE-A20C-06 18 3534540 3534540 C T DLGAP1 Missense_Mutation p.E711K 0.61 tolerated(0.77) benign(0.186) TCGA-EE-A20C-06 18 3880020 3880020 C T DLGAP1 Missense_Mutation p.D17N 0.29 deleterious(0.04) benign(0.319) TCGA-EE-A20C-06 18 39573253 39573253 C T PIK3C3 Missense_Mutation p.P245L 0.50 tolerated(0.21) benign(0.003) TCGA-EE-A20C-06 18 42530104 42530104 A G SETBP1 Missense_Mutation p.K267E 0.32 deleterious(0.01) possibly_damaging(0.54) TCGA-EE-A20C-06 18 42531492 42531492 G A SETBP1 Silent p.R729R 0.39 TCGA-EE-A20C-06 18 43310332 43310332 T C SLC14A1 Missense_Mutation p.V72A 0.45 tolerated(0.75) benign(0.018) TCGA-EE-A20C-06 18 44266225 44266225 A T ST8SIA5 Missense_Mutation p.F161I 0.58 benign(0.347) TCGA-EE-A20C-06 18 44268820 44268820 G A ST8SIA5 Missense_Mutation p.P125L 0.18 probably_damaging(0.964) TCGA-EE-A20C-06 18 44549171 44549171 G A TCEB3CL Silent p.Y376Y 0.06 TCGA-EE-A20C-06 18 47017254 47017254 C T RPL17 Missense_Mutation p.R42Q 0.29 tolerated(0.75) benign(0.002) TCGA-EE-A20C-06 18 47479645 47479645 G A MYO5B Silent p.I579I 0.53 TCGA-EE-A20C-06 18 47479693 47479693 A T MYO5B Silent p.G563G 0.33 TCGA-EE-A20C-06 18 47480803 47480803 G A MYO5B Silent p.V516V 0.54 TCGA-EE-A20C-06 18 47777871 47777871 C T CCDC11 Missense_Mutation p.E253K 0.35 deleterious(0) probably_damaging(0.982) TCGA-EE-A20C-06 18 50278588 50278588 G A DCC Missense_Mutation p.D86N 0.60 deleterious(0) possibly_damaging(0.768) TCGA-EE-A20C-06 18 50589699 50589699 C T DCC Missense_Mutation p.P337L 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 18 50918176 50918176 C T DCC Silent p.V869V 0.39 TCGA-EE-A20C-06 18 50929237 50929237 C T DCC Missense_Mutation p.P970L 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 18 55027423 55027423 C T ST8SIA3 Missense_Mutation p.S353F 0.64 benign(0.022) TCGA-EE-A20C-06 18 56205321 56205321 C T ALPK2 Missense_Mutation p.E700K 0.62 tolerated(0.07) benign(0.043) TCGA-EE-A20C-06 18 5891650 5891650 C T TMEM200C Missense_Mutation p.R138Q 0.42 tolerated(0.53) benign(0.002) TCGA-EE-A20C-06 18 6093389 6093389 G A L3MBTL4 Silent p.F446F 0.56 TCGA-EE-A20C-06 18 61328320 61328320 C G SERPINB3 Missense_Mutation p.G44A 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A20C-06 18 61328321 61328321 C T SERPINB3 Missense_Mutation p.G44R 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A20C-06 18 61465975 61465975 C T SERPINB7 Missense_Mutation p.P198S 0.21 tolerated(1) benign(0.281) TCGA-EE-A20C-06 18 61570565 61570565 G A SERPINB2 3'UTR 0.78 TCGA-EE-A20C-06 18 61582747 61582747 G A SERPINB10 Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 18 61587019 61587019 C T SERPINB10 Intron 0.67 TCGA-EE-A20C-06 18 66721394 66721394 G A CCDC102B 3'UTR 0.83 TCGA-EE-A20C-06 18 67993350 67993350 T C SOCS6 Silent p.T482T 0.53 TCGA-EE-A20C-06 18 6992613 6992613 G A LAMA1 Silent p.I1705I 0.23 TCGA-EE-A20C-06 18 6992673 6992673 G A LAMA1 Silent p.F1685F 0.33 TCGA-EE-A20C-06 18 70417358 70417358 C T NETO1 Missense_Mutation p.E494K 0.33 tolerated_low_confidence(0.31) benign(0.339) TCGA-EE-A20C-06 18 70526289 70526289 C T NETO1 Missense_Mutation p.E81K 0.17 deleterious(0.01) benign(0.416) TCGA-EE-A20C-06 18 74962938 74962938 C T GALR1 Missense_Mutation p.S145F 0.52 tolerated(0.23) benign(0.192) TCGA-EE-A20C-06 18 77624160 77624160 G A KCNG2 Missense_Mutation p.D165N 0.60 deleterious(0.01) possibly_damaging(0.717) TCGA-EE-A20C-06 18 77918229 77918229 C T PARD6G Missense_Mutation p.G186R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 18 8784364 8784370 GGAGGAA AAAGGAG SOGA2 Missense_Mutation p.E419K 0.12 TCGA-EE-A20C-06 18 8798140 8798140 C T SOGA2 Nonsense_Mutation p.Q763* 0.50 TCGA-EE-A20C-06 18 9937007 9937007 T G VAPA Missense_Mutation p.L121V 0.24 deleterious(0) benign(0.368) TCGA-EE-A20C-06 19 10084626 10084626 G A COL5A3 Missense_Mutation p.P1176L 0.44 probably_damaging(0.998) TCGA-EE-A20C-06 19 10224563 10224563 C T P2RY11 Missense_Mutation p.P92S 0.62 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A20C-06 19 10250954 10250954 C T DNMT1 Missense_Mutation p.A1192T 0.43 deleterious(0.03) probably_damaging(0.95) TCGA-EE-A20C-06 19 10461449 10461449 G A TYK2 3'UTR 0.37 TCGA-EE-A20C-06 19 10461450 10461450 G A TYK2 3'UTR 0.41 TCGA-EE-A20C-06 19 10461483 10461483 C T TYK2 3'UTR 0.37 TCGA-EE-A20C-06 19 10461484 10461484 C T TYK2 3'UTR 0.37 TCGA-EE-A20C-06 19 10822887 10822887 G A QTRT1 Missense_Mutation p.G233S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 10822888 10822888 G A QTRT1 Missense_Mutation p.G233D 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 11094893 11094893 T A SMARCA4 Silent p.P22P 0.56 TCGA-EE-A20C-06 19 11280534 11280534 C T KANK2 Intron 0.35 TCGA-EE-A20C-06 19 11352829 11352829 G A DOCK6 Missense_Mutation p.S512F 0.38 deleterious(0) possibly_damaging(0.781) TCGA-EE-A20C-06 19 11470540 11470540 C T DKFZP761J1410 Missense_Mutation p.P75L 0.38 tolerated(0.32) benign(0.138) TCGA-EE-A20C-06 19 12059396 12059396 G C ZNF700 Missense_Mutation p.R186T 0.42 deleterious(0.02) benign(0.114) TCGA-EE-A20C-06 19 12273982 12273982 C T ZNF136 5'UTR 0.46 TCGA-EE-A20C-06 19 12502953 12502953 T C ZNF799 Missense_Mutation p.I87V 0.33 tolerated(0.2) benign(0.05) TCGA-EE-A20C-06 19 12822261 12822261 C T TNPO2 Silent p.E322E 0.41 TCGA-EE-A20C-06 19 12822415 12822415 G A TNPO2 Silent p.I301I 0.53 TCGA-EE-A20C-06 19 1299911 1299911 C T EFNA2 Silent p.T203T 0.39 TCGA-EE-A20C-06 19 13476203 13476203 G T CACNA1A Missense_Mutation p.L238I 0.51 possibly_damaging(0.801) TCGA-EE-A20C-06 19 14000987 14000987 G A C19orf57 Missense_Mutation p.P228S 0.45 tolerated(0.33) probably_damaging(0.932) TCGA-EE-A20C-06 19 1421204 1421204 C T DAZAP1 Missense_Mutation p.P121S 0.53 tolerated(0.19) unknown(0) TCGA-EE-A20C-06 19 14520412 14520412 G A DDX39A Nonsense_Mutation p.Q304* 0.41 TCGA-EE-A20C-06 19 14562737 14562737 G T PKN1 Missense_Mutation p.S362I 0.48 tolerated(0.07) benign(0.136) TCGA-EE-A20C-06 19 14591135 14591135 C T GIPC1 Missense_Mutation p.E213K 0.44 deleterious(0) probably_damaging(0.985) TCGA-EE-A20C-06 19 15165966 15165966 C T CASP14 Intron 0.46 TCGA-EE-A20C-06 19 15226687 15226687 C T ILVBL Missense_Mutation p.E530K 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 15565475 15565475 G A RASAL3 Missense_Mutation p.R651C 0.86 tolerated(0.18) benign(0.002) TCGA-EE-A20C-06 19 15734019 15734019 C T CYP4F8 RNA 0.38 TCGA-EE-A20C-06 19 16345234 16345234 C T AP1M1 Silent p.L432L 0.34 TCGA-EE-A20C-06 19 16345235 16345235 C T AP1M1 Missense_Mutation p.R433W 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 19 16860010 16860010 C T NWD1 Missense_Mutation p.T186I 0.54 tolerated(0.55) possibly_damaging(0.511) TCGA-EE-A20C-06 19 16861191 16861191 G A NWD1 Missense_Mutation p.A580T 0.48 deleterious(0.01) benign(0.358) TCGA-EE-A20C-06 19 17471375 17471375 G A PLVAP Silent p.S428S 0.46 TCGA-EE-A20C-06 19 17743624 17743624 G A UNC13A Missense_Mutation p.P1132L 0.47 deleterious(0) benign(0.114) TCGA-EE-A20C-06 19 18173075 18173075 G A IL12RB1 Missense_Mutation p.S544F 0.38 deleterious(0) probably_damaging(0.919) TCGA-EE-A20C-06 19 18368682 18368682 G A KIAA1683 Missense_Mutation p.R1138W 0.58 deleterious(0) possibly_damaging(0.773) TCGA-EE-A20C-06 19 19010422 19010422 G A COPE 3'UTR 0.46 TCGA-EE-A20C-06 19 19021835 19021835 G A COPE Missense_Mutation p.P79S 0.33 tolerated(0.15) benign(0.034) TCGA-EE-A20C-06 19 19168483 19168483 C T ARMC6 3'UTR 0.47 TCGA-EE-A20C-06 19 19606633 19606633 C T GATAD2A Missense_Mutation p.S232L 0.35 deleterious(0.02) benign(0.38) TCGA-EE-A20C-06 19 19747546 19747546 G A GMIP Missense_Mutation p.R433W 0.44 deleterious(0) possibly_damaging(0.88) TCGA-EE-A20C-06 19 19749274 19749274 C T GMIP Silent p.R185R 0.46 TCGA-EE-A20C-06 19 20117045 20117045 C A ZNF682 Missense_Mutation p.E422D 0.22 deleterious(0.02) benign(0.002) TCGA-EE-A20C-06 19 20736519 20736519 G A ZNF737 Silent p.F42F 0.38 TCGA-EE-A20C-06 19 21132242 21132242 C T ZNF85 Missense_Mutation p.H308Y 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A20C-06 19 2213830 2213830 C T DOT1L Intron 0.29 TCGA-EE-A20C-06 19 2351460 2351460 C T LLfos-48D6.1 3'Flank 0.41 TCGA-EE-A20C-06 19 2732705 2732705 G C SLC39A3 3'UTR 0.30 TCGA-EE-A20C-06 19 2808345 2808345 C T THOP1 Missense_Mutation p.T453I 0.50 deleterious(0) possibly_damaging(0.492) TCGA-EE-A20C-06 19 3006639 3006639 C T TLE2 Missense_Mutation p.G427R 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 19 31038981 31038981 C T ZNF536 Nonsense_Mutation p.Q819* 0.49 TCGA-EE-A20C-06 19 31039385 31039385 T C ZNF536 Silent p.D953D 0.41 TCGA-EE-A20C-06 19 3179084 3179084 C T S1PR4 Silent p.A98A 0.49 TCGA-EE-A20C-06 19 33133038 33133038 G A ANKRD27 Missense_Mutation p.R266C 0.46 deleterious(0) possibly_damaging(0.898) TCGA-EE-A20C-06 19 33414371 33414371 C T CEP89 Silent p.K414K 0.37 TCGA-EE-A20C-06 19 34180174 34180174 C T CHST8 Silent p.L3L 0.51 TCGA-EE-A20C-06 19 3527673 3527673 C T FZR1 Missense_Mutation p.S172F 0.40 deleterious(0) benign(0.178) TCGA-EE-A20C-06 19 35500120 35500120 G A GRAMD1A Missense_Mutation p.E36K 0.48 tolerated(0.23) unknown(0) TCGA-EE-A20C-06 19 35827111 35827111 C A CD22 Silent p.I195I 0.48 TCGA-EE-A20C-06 19 35832663 35832663 G A CD22 Silent p.K610K 0.42 TCGA-EE-A20C-06 19 36004242 36004242 C T DMKN Missense_Mutation p.A46T 0.49 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A20C-06 19 36362827 36362827 G A APLP1 Missense_Mutation p.E247K 0.48 tolerated(0.1) benign(0.189) TCGA-EE-A20C-06 19 36581413 36581413 C T WDR62 Silent p.S675S 0.43 TCGA-EE-A20C-06 19 37428067 37428067 C T ZNF568 Missense_Mutation p.P94L 0.41 deleterious(0.01) benign(0.011) TCGA-EE-A20C-06 19 37676351 37676351 C A ZNF585B Silent p.G696G 0.54 TCGA-EE-A20C-06 19 38573626 38573626 C T SIPA1L3 Missense_Mutation p.S474L 0.47 deleterious(0) possibly_damaging(0.728) TCGA-EE-A20C-06 19 38609958 38609958 C T SIPA1L3 Silent p.T768T 0.49 TCGA-EE-A20C-06 19 39100579 39100579 G A MAP4K1 Silent p.S299S 0.40 TCGA-EE-A20C-06 19 39100580 39100580 G A MAP4K1 Missense_Mutation p.S299F 0.41 tolerated(0.7) benign(0.08) TCGA-EE-A20C-06 19 39789186 39789186 C T IFNL1 3'UTR 0.38 TCGA-EE-A20C-06 19 39798444 39798444 C T LRFN1 Silent p.Q715Q 0.35 TCGA-EE-A20C-06 19 40354352 40354352 C T FCGBP Missense_Mutation p.G5373R 0.30 probably_damaging(1) TCGA-EE-A20C-06 19 41038583 41038583 G A SPTBN4 Missense_Mutation p.E1334K 0.40 deleterious(0.02) benign(0.268) TCGA-EE-A20C-06 19 41179335 41179335 G A NUMBL Missense_Mutation p.S317L 0.29 deleterious(0) probably_damaging(0.968) TCGA-EE-A20C-06 19 41269566 41269566 C T SNRPA Silent p.S225S 0.44 TCGA-EE-A20C-06 19 41381556 41381556 C T CYP2A7 3'UTR 0.23 TCGA-EE-A20C-06 19 4157214 4157214 C T CREB3L3 Missense_Mutation p.H127Y 0.42 tolerated(1) benign(0.063) TCGA-EE-A20C-06 19 41601888 41601888 G A CYP2A13 3'UTR 0.47 TCGA-EE-A20C-06 19 41712408 41712408 G A CYP2S1 3'UTR 0.46 TCGA-EE-A20C-06 19 41727798 41727798 C T AXL Silent p.F141F 0.42 TCGA-EE-A20C-06 19 41863811 41863811 C T B9D2 Missense_Mutation p.G69S 0.36 tolerated(0.16) benign(0.138) TCGA-EE-A20C-06 19 41863860 41863860 C T B9D2 Silent p.G52G 0.42 TCGA-EE-A20C-06 19 41863861 41863861 C T B9D2 Missense_Mutation p.G52E 0.41 tolerated(0.43) benign(0.02) TCGA-EE-A20C-06 19 42260749 42260749 C T CEACAM6 Silent p.Y102Y 0.45 TCGA-EE-A20C-06 19 42471896 42471896 C T ATP1A3 Missense_Mutation p.G960R 0.30 deleterious(0) probably_damaging(0.983) TCGA-EE-A20C-06 19 425229 425229 G A SHC2 Missense_Mutation p.P393S 0.48 tolerated(0.34) benign(0.016) TCGA-EE-A20C-06 19 42797226 42797226 C T CIC Silent p.A1196A 0.33 TCGA-EE-A20C-06 19 42798195 42798195 C T CIC Silent p.P1383P 0.47 TCGA-EE-A20C-06 19 42798196 42798196 C T CIC Missense_Mutation p.R1384W 0.47 probably_damaging(0.973) TCGA-EE-A20C-06 19 4292703 4292703 G A TMIGD2 Missense_Mutation p.P248S 0.40 tolerated(0.28) benign(0.141) TCGA-EE-A20C-06 19 4292704 4292704 G A TMIGD2 Silent p.C247C 0.40 TCGA-EE-A20C-06 19 4307944 4307944 G A FSD1 Silent p.Q103Q 0.21 TCGA-EE-A20C-06 19 43257499 43257499 G A PSG8 3'Flank 0.45 TCGA-EE-A20C-06 19 43372127 43372127 G A PSG1 3'UTR 0.50 TCGA-EE-A20C-06 19 43373146 43373146 G A PSG1 Silent p.N250N 0.25 TCGA-EE-A20C-06 19 43430737 43430737 G A PSG7 Missense_Mutation p.P281S 0.47 tolerated(0.08) benign(0.115) TCGA-EE-A20C-06 19 43528946 43528946 G A PSG11 Silent p.I109I 0.40 TCGA-EE-A20C-06 19 4355162 4355162 G A MPND Missense_Mutation p.E330K 0.43 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 19 43699284 43699284 G A PSG4 Missense_Mutation p.P284L 0.51 tolerated(0.08) possibly_damaging(0.908) TCGA-EE-A20C-06 19 44660892 44660892 C T ZNF234 Silent p.F241F 0.40 TCGA-EE-A20C-06 19 44791285 44791285 G A ZNF235 3'UTR 0.36 TCGA-EE-A20C-06 19 45165191 45165191 C T PVR 3'UTR 0.54 TCGA-EE-A20C-06 19 45411097 45411097 C T APOE Nonsense_Mutation p.Q42* 0.46 TCGA-EE-A20C-06 19 45537713 45537713 C T RELB Silent p.P427P 0.40 TCGA-EE-A20C-06 19 45730953 45730953 G A EXOC3L2 Missense_Mutation p.T124I 0.44 tolerated(0.06) probably_damaging(1) TCGA-EE-A20C-06 19 45766591 45766591 C T MARK4 Silent p.V107V 0.42 TCGA-EE-A20C-06 19 45822980 45822980 T A CKM 5'UTR 0.45 TCGA-EE-A20C-06 19 46308077 46308077 G A RSPH6A Silent p.F362F 0.59 TCGA-EE-A20C-06 19 46915802 46915802 G A CCDC8 Missense_Mutation p.P89L 0.36 benign(0.112) TCGA-EE-A20C-06 19 474625 474625 C T ODF3L2 Silent p.E41E 0.33 TCGA-EE-A20C-06 19 47570064 47570064 G A ZC3H4 Missense_Mutation p.P1154L 0.44 unknown(0) TCGA-EE-A20C-06 19 47570065 47570065 G A ZC3H4 Missense_Mutation p.P1154S 0.44 unknown(0) TCGA-EE-A20C-06 19 47570507 47570507 G A ZC3H4 Silent p.P1006P 0.47 TCGA-EE-A20C-06 19 47570508 47570508 G A ZC3H4 Missense_Mutation p.P1006L 0.47 unknown(0) TCGA-EE-A20C-06 19 47941114 47941114 C T SLC8A2 Missense_Mutation p.D668N 0.53 deleterious(0) benign(0.282) TCGA-EE-A20C-06 19 48220248 48220248 C T EHD2 Missense_Mutation p.P127S 0.48 tolerated(0.57) benign(0.002) TCGA-EE-A20C-06 19 48229070 48229070 C T EHD2 Silent p.G168G 0.48 TCGA-EE-A20C-06 19 48284380 48284380 C T SEPW1 Missense_Mutation p.P42S 0.35 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A20C-06 19 48977516 48977516 G A CYTH2 Missense_Mutation p.G209S 0.43 tolerated(0.54) benign(0) TCGA-EE-A20C-06 19 49104498 49104498 G A FAM83E Silent p.P435P 0.54 TCGA-EE-A20C-06 19 49104499 49104499 G A FAM83E Missense_Mutation p.P435L 0.52 tolerated_low_confidence(0.06) benign(0.36) TCGA-EE-A20C-06 19 49216676 49216676 G A MAMSTR Missense_Mutation p.P366S 0.38 deleterious(0.04) unknown(0) TCGA-EE-A20C-06 19 49506557 49506557 G A RUVBL2 Missense_Mutation p.G30E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 49713561 49713561 C T TRPM4 Missense_Mutation p.A1076V 0.16 deleterious(0) probably_damaging(0.967) TCGA-EE-A20C-06 19 49797258 49797258 G A SLC6A16 Silent p.L482L 0.38 TCGA-EE-A20C-06 19 49933980 49933980 C T SLC17A7 Silent p.E493E 0.43 TCGA-EE-A20C-06 19 50045834 50045834 G A RCN3 Missense_Mutation p.G235E 0.36 tolerated(0.09) possibly_damaging(0.463) TCGA-EE-A20C-06 19 50154643 50154643 C T SCAF1 Missense_Mutation p.P333S 0.50 unknown(0) TCGA-EE-A20C-06 19 50250040 50250040 G A TSKS Missense_Mutation p.L227F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 19 50474566 50474566 G A SIGLEC16 RNA 0.41 TCGA-EE-A20C-06 19 50760601 50760601 G A MYH14 Missense_Mutation p.G697D 0.35 tolerated(0.09) benign(0.142) TCGA-EE-A20C-06 19 5077384 5077384 T A KDM4B Missense_Mutation p.F228Y 0.36 possibly_damaging(0.709) TCGA-EE-A20C-06 19 5077385 5077385 C T KDM4B Silent p.F228F 0.35 TCGA-EE-A20C-06 19 50826961 50826961 G A KCNC3 Missense_Mutation p.R417C 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20C-06 19 50826962 50826962 G A KCNC3 Silent p.V416V 0.50 TCGA-EE-A20C-06 19 50902210 50902210 C T POLD1 Silent p.F34F 0.50 TCGA-EE-A20C-06 19 50939889 50939889 C T MYBPC2 Silent p.L121L 0.41 TCGA-EE-A20C-06 19 51022432 51022432 G A LRRC4B Missense_Mutation p.R180C 0.40 deleterious(0) probably_damaging(0.939) TCGA-EE-A20C-06 19 51022433 51022433 G A LRRC4B Silent p.N179N 0.42 TCGA-EE-A20C-06 19 51192545 51192545 G A SHANK1 Intron 0.36 TCGA-EE-A20C-06 19 51302323 51302323 G A C19orf48 Intron 0.50 TCGA-EE-A20C-06 19 51452287 51452287 G A KLK5 Silent p.I140I 0.47 TCGA-EE-A20C-06 19 51728498 51728498 T A CD33 Missense_Mutation p.F21Y 0.39 tolerated(1) benign(0.002) TCGA-EE-A20C-06 19 51917725 51917725 G A SIGLEC10 Silent p.L554L 0.46 TCGA-EE-A20C-06 19 52521633 52521633 G A ZNF614 Silent p.L44L 0.47 TCGA-EE-A20C-06 19 52521670 52521670 G A ZNF614 Silent p.N31N 0.27 TCGA-EE-A20C-06 19 52772836 52772836 C T ZNF766 5'UTR 0.47 TCGA-EE-A20C-06 19 53391385 53391385 G A ZNF320 Missense_Mutation p.S46F 0.39 tolerated(0.16) benign(0.09) TCGA-EE-A20C-06 19 53644084 53644084 G A ZNF347 Missense_Mutation p.S667L 0.48 deleterious(0.01) possibly_damaging(0.464) TCGA-EE-A20C-06 19 53678753 53678753 C T ZNF665 Silent p.Q29Q 0.15 TCGA-EE-A20C-06 19 53854516 53854516 C T ZNF845 Silent p.F196F 0.20 TCGA-EE-A20C-06 19 54210770 54210770 C G MIR520C RNA 0.47 TCGA-EE-A20C-06 19 54238178 54238178 G A MIR518D RNA 0.47 TCGA-EE-A20C-06 19 54848308 54848308 G A LILRA4 Silent p.F353F 0.43 TCGA-EE-A20C-06 19 55086445 55086445 G A LILRA2 Silent p.S200S 0.37 TCGA-EE-A20C-06 19 55106328 55106328 G A LILRA1 Nonsense_Mutation p.W90* 0.37 TCGA-EE-A20C-06 19 55179167 55179167 C T LILRB4 Missense_Mutation p.P375S 0.44 tolerated(1) benign(0.29) TCGA-EE-A20C-06 19 55222050 55222050 C T AC098784.2 3'Flank 0.58 TCGA-EE-A20C-06 19 55284899 55284899 G A KIR2DL1 Missense_Mutation p.R62K 0.39 tolerated(0.8) probably_damaging(1) TCGA-EE-A20C-06 19 55451374 55451374 C T NLRP7 Silent p.G271G 0.35 TCGA-EE-A20C-06 19 55494377 55494377 C T NLRP2 Silent p.F437F 0.35 TCGA-EE-A20C-06 19 55494434 55494434 G A NLRP2 Silent p.Q456Q 0.51 TCGA-EE-A20C-06 19 55594784 55594784 C T EPS8L1 Missense_Mutation p.P418L 0.58 tolerated(0.14) benign(0.261) TCGA-EE-A20C-06 19 55677193 55677193 G A DNAAF3 Intron 0.54 TCGA-EE-A20C-06 19 55716713 55716713 C T PTPRH Silent p.E200E 0.36 TCGA-EE-A20C-06 19 55832372 55832372 G A TMEM150B Silent p.F11F 0.35 TCGA-EE-A20C-06 19 5590305 5590305 G A SAFB2 Silent p.L837L 0.36 TCGA-EE-A20C-06 19 56108957 56108957 G A FIZ1 Missense_Mutation p.T92I 0.50 deleterious(0) possibly_damaging(0.507) TCGA-EE-A20C-06 19 56133908 56133908 C A ZNF784 Nonsense_Mutation p.E61* 0.33 TCGA-EE-A20C-06 19 56170676 56170676 C T U2AF2 Silent p.D50D 0.50 TCGA-EE-A20C-06 19 56185480 56185480 C T U2AF2 3'UTR 0.38 TCGA-EE-A20C-06 19 56243935 56243935 G A NLRP9 Missense_Mutation p.S421F 0.43 deleterious(0) probably_damaging(0.987) TCGA-EE-A20C-06 19 56422054 56422054 G A NLRP13 Silent p.C719C 0.49 TCGA-EE-A20C-06 19 56459573 56459573 C G NLRP8 Missense_Mutation p.S102W 0.38 tolerated(0.18) probably_damaging(0.951) TCGA-EE-A20C-06 19 56701581 56701581 G A ZSCAN5B Missense_Mutation p.S368F 0.48 deleterious(0) possibly_damaging(0.851) TCGA-EE-A20C-06 19 56702306 56702306 G A ZSCAN5B Silent p.N213N 0.47 TCGA-EE-A20C-06 19 56733215 56733215 G A ZSCAN5A Missense_Mutation p.T407I 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 57175706 57175706 G A ZNF835 Silent p.F287F 0.67 TCGA-EE-A20C-06 19 57329128 57329128 G A PEG3 Missense_Mutation p.P283L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 19 57642912 57642912 C T USP29 3'UTR 0.67 TCGA-EE-A20C-06 19 5789614 5789614 G A DUS3L Silent p.F168F 0.33 TCGA-EE-A20C-06 19 58945976 58945976 G A ZNF132 Missense_Mutation p.L279F 0.59 deleterious(0.04) probably_damaging(0.923) TCGA-EE-A20C-06 19 59012679 59012679 G A SLC27A5 Silent p.L386L 0.47 TCGA-EE-A20C-06 19 630055 630055 G A POLRMT Missense_Mutation p.P103S 0.59 tolerated(0.21) benign(0.007) TCGA-EE-A20C-06 19 6459553 6459553 C T SLC25A23 Silent p.V29V 0.42 TCGA-EE-A20C-06 19 6664821 6664821 G A TNFSF14 3'UTR 0.50 TCGA-EE-A20C-06 19 6684839 6684839 C T C3 Missense_Mutation p.E1326K 0.42 tolerated(0.58) benign(0) TCGA-EE-A20C-06 19 6696607 6696607 G A C3 Missense_Mutation p.R954C 0.38 deleterious(0.03) benign(0) TCGA-EE-A20C-06 19 6759623 6759623 C T SH2D3A Missense_Mutation p.E160K 0.38 tolerated(0.44) benign(0.007) TCGA-EE-A20C-06 19 6820742 6820742 C T VAV1 Silent p.F78F 0.18 TCGA-EE-A20C-06 19 7117139 7117139 G A INSR Silent p.I1359I 0.47 TCGA-EE-A20C-06 19 7122740 7122740 C T INSR Silent p.Q1138Q 0.48 TCGA-EE-A20C-06 19 7675985 7675985 C T CAMSAP3 Missense_Mutation p.P379S 0.47 tolerated(0.14) possibly_damaging(0.612) TCGA-EE-A20C-06 19 7694436 7694436 G A XAB2 5'UTR 0.40 TCGA-EE-A20C-06 19 7712642 7712642 C T STXBP2 Silent p.F576F 0.40 TCGA-EE-A20C-06 19 7832468 7832468 C T CLEC4M Nonsense_Mutation p.Q335* 0.44 TCGA-EE-A20C-06 19 7977296 7977296 C T MAP2K7 Missense_Mutation p.H414Y 0.29 deleterious_low_confidence(0) benign(0.063) TCGA-EE-A20C-06 19 840992 840992 G A PRTN3 5'UTR 0.36 TCGA-EE-A20C-06 19 8645813 8645813 G A ADAMTS10 Silent p.F1092F 0.36 TCGA-EE-A20C-06 19 8808176 8808176 C T ACTL9 Silent p.K292K 0.52 TCGA-EE-A20C-06 19 8841699 8841699 C T OR2Z1 Silent p.F103F 0.44 TCGA-EE-A20C-06 19 8976423 8976423 C T MUC16 Silent p.K14135K 0.28 TCGA-EE-A20C-06 19 9046165 9046165 G A MUC16 Silent p.L11822L 0.35 TCGA-EE-A20C-06 19 9058194 9058194 G A MUC16 Missense_Mutation p.P9751L 0.67 unknown(0) TCGA-EE-A20C-06 19 9063559 9063559 G A MUC16 Missense_Mutation p.P7963S 0.48 unknown(0) TCGA-EE-A20C-06 19 9063836 9063836 G A MUC16 Silent p.S7870S 0.58 TCGA-EE-A20C-06 19 9067427 9067427 C T MUC16 Silent p.E6673E 0.49 TCGA-EE-A20C-06 19 9068660 9068660 G A MUC16 Silent p.I6262I 0.46 TCGA-EE-A20C-06 19 9070817 9070817 G A MUC16 Silent p.I5543I 0.46 TCGA-EE-A20C-06 19 9071595 9071595 A G MUC16 Missense_Mutation p.L5284P 0.48 unknown(0) TCGA-EE-A20C-06 19 9074295 9074295 C T MUC16 Missense_Mutation p.G4384E 0.52 unknown(0) TCGA-EE-A20C-06 19 9084598 9084598 G A MUC16 Missense_Mutation p.S2406F 0.45 unknown(0) TCGA-EE-A20C-06 19 9085631 9085631 T C MUC16 Missense_Mutation p.T2062A 0.26 unknown(0) TCGA-EE-A20C-06 19 9089128 9089128 G A MUC16 Missense_Mutation p.P896L 0.56 unknown(0) TCGA-EE-A20C-06 19 9091160 9091160 C T MUC16 Missense_Mutation p.D219N 0.52 unknown(0) TCGA-EE-A20C-06 19 9296579 9296579 G A OR7D2 Missense_Mutation p.G41E 0.49 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-EE-A20C-06 1 100154781 100154781 C T PALMD Missense_Mutation p.P322L 1.00 tolerated(0.09) benign(0.282) TCGA-EE-A20C-06 1 100568561 100568561 G A SASS6 Missense_Mutation p.P542S 0.71 tolerated(0.11) benign(0.007) TCGA-EE-A20C-06 1 10190589 10190589 C T UBE4B Missense_Mutation p.S576F 0.68 tolerated(0.23) benign(0.333) TCGA-EE-A20C-06 1 102296243 102296243 C T OLFM3 Missense_Mutation p.M119I 0.24 tolerated(0.19) benign(0.001) TCGA-EE-A20C-06 1 103487308 103487308 T A COL11A1 Silent p.A421A 0.17 TCGA-EE-A20C-06 1 103488487 103488487 C T COL11A1 Silent p.R352R 0.22 TCGA-EE-A20C-06 1 104297432 104297432 G A AMY1C Missense_Mutation p.G366E 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 1 10702960 10702960 C T CASZ1 Missense_Mutation p.R1373Q 0.72 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 1 109377602 109377602 C T AKNAD1 Missense_Mutation p.G538E 0.18 tolerated(0.72) benign(0.001) TCGA-EE-A20C-06 1 109795545 109795545 C T CELSR2 Silent p.P948P 0.64 TCGA-EE-A20C-06 1 109814029 109814029 C T CELSR2 Silent p.F2566F 0.70 TCGA-EE-A20C-06 1 109954795 109954795 G A PSMA5 Silent p.F101F 0.71 TCGA-EE-A20C-06 1 110085928 110085928 C T GPR61 Missense_Mutation p.P95L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 110207637 110207637 C T GSTM4 3'Flank 0.77 TCGA-EE-A20C-06 1 110304167 110304167 A G EPS8L3 Missense_Mutation p.Y16H 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 110766321 110766321 G A KCNC4 Missense_Mutation p.V472I 0.21 deleterious(0) probably_damaging(0.985) TCGA-EE-A20C-06 1 11106723 11106723 G A MASP2 Missense_Mutation p.P101L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 11199412 11199412 G A MTOR Silent p.H1693H 0.73 TCGA-EE-A20C-06 1 113255384 113255384 C T PPM1J Silent p.E237E 0.76 TCGA-EE-A20C-06 1 115220120 115220120 G A AMPD1 Silent p.L447L 0.13 TCGA-EE-A20C-06 1 115220124 115220124 C T AMPD1 Silent p.A445A 0.84 TCGA-EE-A20C-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.68 tolerated(0.06) benign(0.006) TCGA-EE-A20C-06 1 115273131 115273131 G A CSDE1 Missense_Mutation p.P443S 0.24 tolerated(0.08) benign(0.237) TCGA-EE-A20C-06 1 11596384 11596384 G A PTCHD2 Missense_Mutation p.A1274T 0.68 tolerated(0.56) benign(0.007) TCGA-EE-A20C-06 1 118567966 118567966 G A SPAG17 Silent p.H1268H 0.70 TCGA-EE-A20C-06 1 1225748 1225748 C G SCNN1D Missense_Mutation p.S587C 0.27 tolerated(0.09) benign(0.013) TCGA-EE-A20C-06 1 12954863 12954863 C T PRAMEF10 Silent p.R140R 0.73 TCGA-EE-A20C-06 1 12979810 12979810 C T PRAMEF7 Silent p.F334F 0.23 TCGA-EE-A20C-06 1 1330820 1330820 A G CCNL2 Missense_Mutation p.V183A 0.65 deleterious(0) possibly_damaging(0.873) TCGA-EE-A20C-06 1 13718424 13718424 G C PRAMEF17 Missense_Mutation p.G296A 0.69 deleterious(0.02) benign(0.045) TCGA-EE-A20C-06 1 13718620 13718620 C T PRAMEF17 Silent p.I361I 0.76 TCGA-EE-A20C-06 1 13719035 13719035 G T PRAMEF17 3'UTR 0.26 TCGA-EE-A20C-06 1 1417677 1417677 C T ATAD3B Missense_Mutation p.S225F 0.25 deleterious(0) benign(0.286) TCGA-EE-A20C-06 1 1417678 1417678 C A ATAD3B Silent p.S225S 0.27 TCGA-EE-A20C-06 1 142713800 142713800 C T RP11-417J8.6 RNA 0.53 TCGA-EE-A20C-06 1 1431175 1431175 C T ATAD3B Missense_Mutation p.P642L 0.86 deleterious_low_confidence(0) benign(0) TCGA-EE-A20C-06 1 144881446 144881446 T A PDE4DIP Missense_Mutation p.K1250N 0.14 deleterious(0) probably_damaging(0.913) TCGA-EE-A20C-06 1 145561347 145561347 G A ANKRD35 Silent p.G345G 0.38 TCGA-EE-A20C-06 1 145562884 145562884 G A ANKRD35 Missense_Mutation p.E858K 0.58 tolerated(0.09) probably_damaging(0.987) TCGA-EE-A20C-06 1 146466101 146466101 G A NBPF12 Missense_Mutation p.G3326R 0.39 benign(0.009) TCGA-EE-A20C-06 1 1480294 1480294 A T SSU72 Missense_Mutation p.F105I 0.65 deleterious(0) probably_damaging(0.97) TCGA-EE-A20C-06 1 149763001 149763001 G A FCGR1A Silent p.L351L 0.76 TCGA-EE-A20C-06 1 150676664 150676664 C T HORMAD1 Missense_Mutation p.S293N 0.61 tolerated(1) benign(0) TCGA-EE-A20C-06 1 150923259 150923259 C T SETDB1 Missense_Mutation p.R636W 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 151502584 151502584 G A CGN Missense_Mutation p.R769Q 0.71 deleterious(0.02) possibly_damaging(0.864) TCGA-EE-A20C-06 1 151502585 151502585 G A CGN Silent p.R769R 0.70 TCGA-EE-A20C-06 1 151774811 151774811 C T LINGO4 Missense_Mutation p.G124R 0.30 deleterious(0.01) possibly_damaging(0.542) TCGA-EE-A20C-06 1 152128196 152128196 C T RPTN Missense_Mutation p.S460N 0.20 tolerated(0.3) benign(0.02) TCGA-EE-A20C-06 1 152282785 152282785 C T FLG Missense_Mutation p.G1526E 0.24 probably_damaging(0.931) TCGA-EE-A20C-06 1 152329780 152329780 C T FLG2 Missense_Mutation p.R161K 0.21 unknown(0) TCGA-EE-A20C-06 1 152484369 152484369 C T LCE5A 3'UTR 0.46 TCGA-EE-A20C-06 1 152538403 152538403 G A LCE3E 3'UTR 0.74 TCGA-EE-A20C-06 1 152538404 152538404 G A LCE3E 3'UTR 0.72 TCGA-EE-A20C-06 1 152732594 152732594 G A KPRP Missense_Mutation p.R177K 0.27 tolerated(0.59) benign(0.022) TCGA-EE-A20C-06 1 152882714 152882714 G A IVL Missense_Mutation p.M147I 0.12 tolerated_low_confidence(0.27) unknown(0) TCGA-EE-A20C-06 1 152975727 152975727 C T SPRR3 Silent p.V77V 0.17 TCGA-EE-A20C-06 1 153346398 153346398 C A S100A12 Missense_Mutation p.D62Y 0.62 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 1 153932538 153932538 G A SLC39A1 3'UTR 0.67 TCGA-EE-A20C-06 1 153963240 153963240 T G RPS27 5'UTR 0.22 TCGA-EE-A20C-06 1 154163752 154163752 C T TPM3 Silent p.L51L 0.18 TCGA-EE-A20C-06 1 154180057 154180057 G A C1orf43 Missense_Mutation p.P212S 0.30 tolerated(0.26) benign(0.035) TCGA-EE-A20C-06 1 154245822 154245822 C T HAX1 Missense_Mutation p.P22S 0.65 deleterious(0.01) possibly_damaging(0.586) TCGA-EE-A20C-06 1 154744858 154744858 G A KCNN3 Silent p.I347I 0.54 TCGA-EE-A20C-06 1 154987938 154987938 C T ZBTB7B Nonsense_Mutation p.Q302* 0.17 TCGA-EE-A20C-06 1 155014088 155014088 C T DCST1 Silent p.S249S 0.15 TCGA-EE-A20C-06 1 155254519 155254519 G A HCN3 Missense_Mutation p.D354N 0.19 deleterious(0) benign(0.026) TCGA-EE-A20C-06 1 155263257 155263257 G A PKLR Missense_Mutation p.P414L 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A20C-06 1 155263258 155263258 G A PKLR Missense_Mutation p.P414S 0.24 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 1 155691377 155691377 C T DAP3 Missense_Mutation p.P80S 0.22 tolerated(0.07) benign(0.011) TCGA-EE-A20C-06 1 156146617 156146617 C T SEMA4A Silent p.S705S 0.25 TCGA-EE-A20C-06 1 156714136 156714136 G T HDGF Missense_Mutation p.S119Y 0.22 deleterious(0.01) possibly_damaging(0.736) TCGA-EE-A20C-06 1 157494030 157494030 A T FCRL5 Intron 0.82 TCGA-EE-A20C-06 1 157497523 157497523 C T FCRL5 Missense_Mutation p.G615E 0.71 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A20C-06 1 157497524 157497524 C T FCRL5 Missense_Mutation p.G615R 0.72 tolerated(0.22) possibly_damaging(0.787) TCGA-EE-A20C-06 1 157801743 157801743 A T CD5L 3'UTR 0.20 TCGA-EE-A20C-06 1 158260927 158260927 C T CD1C Missense_Mutation p.S22F 0.88 tolerated(1) benign(0.001) TCGA-EE-A20C-06 1 158261165 158261165 C T CD1C Silent p.D101D 0.21 TCGA-EE-A20C-06 1 158576745 158576745 G A OR10Z1 Missense_Mutation p.E173K 0.27 tolerated(1) benign(0.008) TCGA-EE-A20C-06 1 158604364 158604364 C T SPTA1 Missense_Mutation p.G1845E 0.27 tolerated(1) possibly_damaging(0.489) TCGA-EE-A20C-06 1 158605765 158605765 G A SPTA1 Silent p.I1790I 0.63 TCGA-EE-A20C-06 1 158669720 158669720 C G OR6K2 Silent p.T241T 0.72 TCGA-EE-A20C-06 1 158725174 158725174 G A OR6K6 Nonsense_Mutation p.W190* 0.18 TCGA-EE-A20C-06 1 159035961 159035961 C T AIM2 Silent p.K185K 0.71 TCGA-EE-A20C-06 1 159163804 159163804 C T CADM3 Missense_Mutation p.S256F 0.71 tolerated(0.27) benign(0.047) TCGA-EE-A20C-06 1 159505099 159505099 C T OR10J5 Silent p.R233R 0.53 TCGA-EE-A20C-06 1 159558139 159558139 G A APCS Missense_Mutation p.E105K 0.77 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A20C-06 1 159683855 159683855 C T CRP Silent p.T45T 0.22 TCGA-EE-A20C-06 1 159842846 159842846 C T CCDC19 Missense_Mutation p.E489K 0.15 tolerated(0.95) benign(0.027) TCGA-EE-A20C-06 1 159898223 159898223 C T IGSF9 Silent p.V985V 0.92 TCGA-EE-A20C-06 1 160106410 160106410 G A ATP1A2 Missense_Mutation p.E872K 0.74 deleterious(0) possibly_damaging(0.847) TCGA-EE-A20C-06 1 16101188 16101188 C T FBLIM1 Missense_Mutation p.H263Y 0.22 deleterious(0) benign(0.091) TCGA-EE-A20C-06 1 161029453 161029453 C T ARHGAP30 Missense_Mutation p.D51N 0.15 deleterious(0) probably_damaging(0.943) TCGA-EE-A20C-06 1 161029454 161029454 C T ARHGAP30 Silent p.V50V 0.17 TCGA-EE-A20C-06 1 161519654 161519654 C T FCGR3A 5'UTR 0.42 TCGA-EE-A20C-06 1 161645091 161645091 C T FCGR2B Missense_Mutation p.P269S 0.74 tolerated(0.08) probably_damaging(0.992) TCGA-EE-A20C-06 1 161681133 161681133 G A FCRLA Missense_Mutation p.G146E 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A20C-06 1 161693166 161693166 A G FCRLB Missense_Mutation p.E21G 0.21 deleterious(0.02) possibly_damaging(0.906) TCGA-EE-A20C-06 1 161789483 161789483 C T ATF6 Missense_Mutation p.R324C 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 16255291 16255291 G A SPEN Silent p.R852R 0.74 TCGA-EE-A20C-06 1 162774082 162774082 C T HSD17B7 Missense_Mutation p.T258I 0.66 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A20C-06 1 163122409 163122409 G A RGS5 Silent p.S105S 0.23 TCGA-EE-A20C-06 1 16376144 16376144 C T CLCNKB Silent p.F271F 0.35 TCGA-EE-A20C-06 1 16475015 16475015 G A EPHA2 Silent p.A227A 0.71 TCGA-EE-A20C-06 1 16475016 16475016 G A EPHA2 Missense_Mutation p.A227V 0.71 deleterious(0.04) benign(0.013) TCGA-EE-A20C-06 1 166905895 166905895 G A ILDR2 Silent p.C212C 0.27 TCGA-EE-A20C-06 1 166926004 166926004 C T ILDR2 Silent p.G155G 0.79 TCGA-EE-A20C-06 1 16736285 16736285 G A SPATA21 Missense_Mutation p.S133L 0.79 tolerated(0.07) benign(0.016) TCGA-EE-A20C-06 1 167666602 167666602 G A RCSD1 Silent p.E247E 0.21 TCGA-EE-A20C-06 1 167666886 167666886 G A RCSD1 Missense_Mutation p.G342E 0.76 tolerated(0.19) benign(0.02) TCGA-EE-A20C-06 1 169391297 169391297 C T CCDC181 Silent p.R124R 0.80 TCGA-EE-A20C-06 1 16945753 16945753 A T RP5-1182A14.5 3'Flank 0.21 TCGA-EE-A20C-06 1 16945754 16945754 G A RP5-1182A14.5 3'Flank 0.22 TCGA-EE-A20C-06 1 16952910 16952910 G A CROCCP2 3'Flank 0.08 TCGA-EE-A20C-06 1 169559423 169559423 C T SELP Missense_Mutation p.G819E 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 1 169586429 169586429 G A SELP Silent p.T106T 0.71 TCGA-EE-A20C-06 1 169586430 169586430 G C SELP Missense_Mutation p.T106S 0.72 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 1 169696637 169696637 C T SELE Missense_Mutation p.G500R 0.61 tolerated(0.41) benign(0.049) TCGA-EE-A20C-06 1 171086468 171086468 A G FMO3 Silent p.K495K 0.17 TCGA-EE-A20C-06 1 172425578 172425578 C T C1orf105 Silent p.S74S 0.63 TCGA-EE-A20C-06 1 172634825 172634825 C T FASLG Missense_Mutation p.S172F 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 1 173516897 173516897 C T SLC9C2 Missense_Mutation p.M496I 0.55 tolerated(0.2) benign(0) TCGA-EE-A20C-06 1 175054611 175054611 C T TNN Silent p.I435I 0.18 TCGA-EE-A20C-06 1 175335095 175335095 C T TNR Missense_Mutation p.E745K 0.78 tolerated(0.08) benign(0.379) TCGA-EE-A20C-06 1 175372465 175372465 C T TNR Missense_Mutation p.E263K 0.80 tolerated(0.44) benign(0.001) TCGA-EE-A20C-06 1 175375909 175375909 G A TNR 5'UTR 0.63 TCGA-EE-A20C-06 1 176563998 176563998 C T PAPPA2 Missense_Mutation p.R420C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 176564359 176564359 C T PAPPA2 Missense_Mutation p.P540L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 17690111 17690111 C T PADI4 Missense_Mutation p.S618F 0.22 deleterious(0) probably_damaging(0.984) TCGA-EE-A20C-06 1 17749279 17749279 G A RCC2 Missense_Mutation p.P193S 0.28 deleterious(0) probably_damaging(0.934) TCGA-EE-A20C-06 1 17749280 17749280 G A RCC2 Silent p.A192A 0.28 TCGA-EE-A20C-06 1 177927477 177927477 G A SEC16B Silent p.I385I 0.76 TCGA-EE-A20C-06 1 179660080 179660080 G A TDRD5 3'UTR 0.70 TCGA-EE-A20C-06 1 179815644 179815644 G A TOR1AIP2 Silent p.V325V 0.73 TCGA-EE-A20C-06 1 180022222 180022222 A C CEP350 Missense_Mutation p.N1637T 0.16 probably_damaging(0.945) TCGA-EE-A20C-06 1 180159638 180159638 C T QSOX1 Missense_Mutation p.P404L 0.81 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 180165467 180165467 C G QSOX1 Missense_Mutation p.H513Q 0.24 deleterious(0.03) possibly_damaging(0.483) TCGA-EE-A20C-06 1 180257417 180257417 G A ACBD6 3'UTR 0.69 TCGA-EE-A20C-06 1 180885859 180885859 C T KIAA1614 Missense_Mutation p.S207F 0.71 deleterious(0) possibly_damaging(0.834) TCGA-EE-A20C-06 1 181726184 181726184 C T CACNA1E Silent p.I1417I 0.57 TCGA-EE-A20C-06 1 182027129 182027129 G A ZNF648 Missense_Mutation p.S6F 0.23 tolerated_low_confidence(0.28) benign(0.001) TCGA-EE-A20C-06 1 182615997 182615997 G A RGS8 Missense_Mutation p.S157F 0.68 deleterious(0) benign(0.289) TCGA-EE-A20C-06 1 183187526 183187526 G A LAMC2 Missense_Mutation p.D136N 0.23 tolerated(0.34) benign(0.008) TCGA-EE-A20C-06 1 183253105 183253105 T C NMNAT2 Intron 0.79 TCGA-EE-A20C-06 1 185270669 185270669 A G IVNS1ABP Silent p.H264H 0.40 TCGA-EE-A20C-06 1 18554486 18554486 G A IGSF21 Silent p.R55R 0.22 TCGA-EE-A20C-06 1 186316442 186316442 G A TPR Silent p.S975S 0.17 TCGA-EE-A20C-06 1 196227400 196227400 C T KCNT2 Silent p.R1045R 0.84 TCGA-EE-A20C-06 1 197061162 197061162 G A ASPM Nonsense_Mutation p.R3107* 0.75 TCGA-EE-A20C-06 1 197396630 197396630 C T CRB1 Silent p.V725V 0.24 TCGA-EE-A20C-06 1 199997000 199997000 G A NR5A2 Missense_Mutation p.D9N 0.25 tolerated_low_confidence(0.56) benign(0) TCGA-EE-A20C-06 1 200522619 200522619 C T KIF14 Missense_Mutation p.G1615D 0.65 tolerated(0.2) benign(0.052) TCGA-EE-A20C-06 1 200587238 200587238 C T KIF14 Missense_Mutation p.R205K 0.79 tolerated(0.46) benign(0.021) TCGA-EE-A20C-06 1 201190836 201190836 G A IGFN1 Missense_Mutation p.S3388N 0.67 benign(0.352) TCGA-EE-A20C-06 1 201190837 201190837 T C IGFN1 Silent p.S3388S 0.66 TCGA-EE-A20C-06 1 203144731 203144731 G A MYBPH Silent p.A51A 0.65 TCGA-EE-A20C-06 1 203188378 203188378 A T CHIT1 Missense_Mutation p.V332E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 204006599 204006599 G A LINC00303 RNA 0.16 TCGA-EE-A20C-06 1 20417136 20417136 G A PLA2G5 Missense_Mutation p.R123Q 0.67 tolerated(0.2) benign(0.08) TCGA-EE-A20C-06 1 204197269 204197269 C A PLEKHA6 Silent p.R991R 0.18 TCGA-EE-A20C-06 1 204951081 204951081 C T NFASC Silent p.V801V 0.78 TCGA-EE-A20C-06 1 20501649 20501649 C T PLA2G2C Intron 0.60 TCGA-EE-A20C-06 1 205687458 205687458 T A NUCKS1 Nonsense_Mutation p.K228* 0.24 TCGA-EE-A20C-06 1 205883945 205883945 C T SLC26A9 3'UTR 0.17 TCGA-EE-A20C-06 1 207110999 207110999 C T PIGR Silent p.R162R 0.59 TCGA-EE-A20C-06 1 207111048 207111048 C T PIGR Missense_Mutation p.R146K 0.23 tolerated(1) benign(0.006) TCGA-EE-A20C-06 1 207265062 207265062 A T C4BPB Missense_Mutation p.K102N 0.19 tolerated(0.35) benign(0.015) TCGA-EE-A20C-06 1 207297685 207297685 G A C4BPA Nonsense_Mutation p.W227* 0.72 TCGA-EE-A20C-06 1 207307782 207307782 G A C4BPA Missense_Mutation p.G373D 0.57 tolerated(0.07) benign(0.42) TCGA-EE-A20C-06 1 20964586 20964586 C T PINK1 Silent p.A213A 0.73 TCGA-EE-A20C-06 1 209797291 209797291 G A LAMB3 Silent p.S677S 0.70 TCGA-EE-A20C-06 1 209823372 209823372 A T LAMB3 Missense_Mutation p.F40L 0.73 tolerated(0.68) benign(0.005) TCGA-EE-A20C-06 1 21014266 21014266 G A KIF17 Missense_Mutation p.S518F 0.19 tolerated_low_confidence(0.27) benign(0.303) TCGA-EE-A20C-06 1 212798835 212798835 G A FAM71A Missense_Mutation p.G206R 0.68 tolerated(0.36) benign(0.001) TCGA-EE-A20C-06 1 212799310 212799310 G A FAM71A Missense_Mutation p.R364Q 0.60 tolerated(0.28) benign(0.004) TCGA-EE-A20C-06 1 212799950 212799950 G A FAM71A Silent p.T577T 0.17 TCGA-EE-A20C-06 1 214837042 214837042 C T CENPF Missense_Mutation p.P3084S 0.75 possibly_damaging(0.832) TCGA-EE-A20C-06 1 215793523 215793523 T C KCTD3 Missense_Mutation p.F671L 0.80 deleterious_low_confidence(0) benign(0.002) TCGA-EE-A20C-06 1 216074170 216074170 G A USH2A Missense_Mutation p.R2460C 0.72 probably_damaging(0.982) TCGA-EE-A20C-06 1 220826508 220826508 G A MARK1 Missense_Mutation p.R601Q 0.29 deleterious(0.04) benign(0.012) TCGA-EE-A20C-06 1 22156492 22156492 C T HSPG2 Missense_Mutation p.E3922K 0.58 benign(0.335) TCGA-EE-A20C-06 1 22168862 22168862 G T HSPG2 Silent p.S2974S 0.71 TCGA-EE-A20C-06 1 225611708 225611708 C T LBR Missense_Mutation p.E24K 0.19 deleterious(0.05) probably_damaging(1) TCGA-EE-A20C-06 1 227069665 227069665 C T PSEN2 Silent p.S19S 0.24 TCGA-EE-A20C-06 1 228494234 228494234 G A OBSCN Missense_Mutation p.G4898S 0.24 probably_damaging(0.999) TCGA-EE-A20C-06 1 228503767 228503767 G A OBSCN Missense_Mutation p.R5368Q 0.67 benign(0.33) TCGA-EE-A20C-06 1 228505416 228505416 G T OBSCN Missense_Mutation p.G5562W 0.62 probably_damaging(1) TCGA-EE-A20C-06 1 22915768 22915768 G A EPHA8 Intron 0.24 TCGA-EE-A20C-06 1 229665973 229665973 G A ABCB10 Silent p.L540L 0.25 TCGA-EE-A20C-06 1 230923331 230923331 G A CAPN9 Missense_Mutation p.E528K 0.12 tolerated(0.48) benign(0.002) TCGA-EE-A20C-06 1 231339688 231339688 C T TRIM67 Missense_Mutation p.P537L 0.30 deleterious(0.02) benign(0.192) TCGA-EE-A20C-06 1 232943530 232943530 C T MAP10 Missense_Mutation p.H921Y 0.67 tolerated(0.35) benign(0.002) TCGA-EE-A20C-06 1 233393996 233393996 C T PCNXL2 Missense_Mutation p.D538N 0.68 deleterious(0.02) possibly_damaging(0.461) TCGA-EE-A20C-06 1 233807165 233807165 C T KCNK1 Silent p.S300S 0.20 TCGA-EE-A20C-06 1 234527374 234527374 G A TARBP1 Silent p.I1605I 0.23 TCGA-EE-A20C-06 1 235384941 235384941 C T ARID4B Missense_Mutation p.D368N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 1 235384943 235384943 T C ARID4B Missense_Mutation p.Q367R 0.18 tolerated(0.1) probably_damaging(0.994) TCGA-EE-A20C-06 1 236717941 236717941 C T HEATR1 Missense_Mutation p.S2012N 0.68 tolerated(0.27) benign(0.175) TCGA-EE-A20C-06 1 23758321 23758321 G A ASAP3 Missense_Mutation p.P805L 0.24 deleterious_low_confidence(0.03) benign(0.002) TCGA-EE-A20C-06 1 23885932 23885932 C T ID3 5'UTR 0.71 TCGA-EE-A20C-06 1 23885933 23885933 C T ID3 5'UTR 0.81 TCGA-EE-A20C-06 1 240072373 240072373 C T CHRM3 Missense_Mutation p.P541L 0.77 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 240255924 240255924 G A FMN2 Missense_Mutation p.G172E 0.23 unknown(0) TCGA-EE-A20C-06 1 240256544 240256544 G A FMN2 Missense_Mutation p.G379R 0.91 unknown(0) TCGA-EE-A20C-06 1 240256545 240256545 G A FMN2 Missense_Mutation p.G379E 0.92 unknown(0) TCGA-EE-A20C-06 1 240370204 240370204 C T FMN2 Missense_Mutation p.P698S 0.72 unknown(0) TCGA-EE-A20C-06 1 240656514 240656514 G A GREM2 Missense_Mutation p.R88W 0.20 tolerated(0.06) possibly_damaging(0.67) TCGA-EE-A20C-06 1 24125210 24125210 G A GALE Silent p.S44S 0.22 TCGA-EE-A20C-06 1 243859016 243859016 C T AKT3 Missense_Mutation p.E17K 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 24434502 24434502 C T MYOM3 Missense_Mutation p.A75T 0.68 tolerated(0.09) benign(0.421) TCGA-EE-A20C-06 1 24434503 24434503 C T MYOM3 Silent p.T74T 0.67 TCGA-EE-A20C-06 1 2452206 2452206 G A PANK4 Missense_Mutation p.P188S 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 245848728 245848728 G A KIF26B Missense_Mutation p.G815R 0.72 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 1 247587658 247587658 G A NLRP3 Missense_Mutation p.D305N 0.29 deleterious(0.03) probably_damaging(1) TCGA-EE-A20C-06 1 247694839 247694839 G A OR2C3 3'UTR 0.71 TCGA-EE-A20C-06 1 248059766 248059766 G A OR2W3 Missense_Mutation p.R293K 0.53 deleterious(0.03) benign(0.176) TCGA-EE-A20C-06 1 248525164 248525164 C T OR2T4 Silent p.F94F 0.32 TCGA-EE-A20C-06 1 248616128 248616128 C T OR2T2 Silent p.S10S 0.15 TCGA-EE-A20C-06 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.22 deleterious(0) possibly_damaging(0.815) TCGA-EE-A20C-06 1 248685778 248685778 C T OR2G6 Silent p.F277F 0.17 TCGA-EE-A20C-06 1 249142794 249142794 C T ZNF672 Missense_Mutation p.P441S 0.26 tolerated_low_confidence(0.22) benign(0.011) TCGA-EE-A20C-06 1 2525362 2525362 G A MMEL1 Silent p.A586A 0.22 TCGA-EE-A20C-06 1 27432478 27432478 G A SLC9A1 Silent p.I461I 0.51 TCGA-EE-A20C-06 1 27720878 27720878 G A GPR3 Silent p.K192K 0.20 TCGA-EE-A20C-06 1 28148868 28148868 T G STX12 3'UTR 0.97 TCGA-EE-A20C-06 1 32672920 32672920 G A IQCC Missense_Mutation p.G293E 0.71 tolerated(0.33) benign(0.246) TCGA-EE-A20C-06 1 32843855 32843855 G A BSDC1 Silent p.F203F 0.17 TCGA-EE-A20C-06 1 3391288 3391288 C T ARHGEF16 Missense_Mutation p.T441I 0.15 deleterious(0) possibly_damaging(0.905) TCGA-EE-A20C-06 1 33957056 33957056 C T ZSCAN20 Missense_Mutation p.P400S 0.66 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 1 34002637 34002637 A G CSMD2 Silent p.N3144N 0.21 TCGA-EE-A20C-06 1 34080109 34080109 C T CSMD2 Missense_Mutation p.G2003D 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A20C-06 1 34112395 34112395 C T CSMD2 Missense_Mutation p.D1503N 0.71 deleterious(0.01) possibly_damaging(0.536) TCGA-EE-A20C-06 1 34209029 34209029 C T CSMD2 Silent p.K635K 0.18 TCGA-EE-A20C-06 1 36897417 36897417 C T OSCP1 Missense_Mutation p.D168N 0.27 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 1 36897419 36897419 T C OSCP1 Missense_Mutation p.Q167R 0.27 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 1 3698136 3698136 C T LRRC47 Silent p.L481L 0.16 TCGA-EE-A20C-06 1 37270690 37270690 G A GRIK3 Silent p.I821I 0.69 TCGA-EE-A20C-06 1 37945972 37945972 C T ZC3H12A Silent p.I175I 0.69 TCGA-EE-A20C-06 1 40129001 40129001 C T NT5C1A Missense_Mutation p.R180Q 0.69 tolerated(1) benign(0.004) TCGA-EE-A20C-06 1 40701717 40701717 C T RLF Missense_Mutation p.P448L 0.70 deleterious(0) probably_damaging(0.962) TCGA-EE-A20C-06 1 41095019 41095019 G A RIMS3 Silent p.D166D 0.64 TCGA-EE-A20C-06 1 41978995 41978995 C T HIVEP3 Missense_Mutation p.R1966K 0.71 benign(0.053) TCGA-EE-A20C-06 1 43130569 43130569 G A PPIH Silent p.G93G 0.19 TCGA-EE-A20C-06 1 43212529 43212529 A G LEPRE1 3'UTR 0.22 TCGA-EE-A20C-06 1 43228090 43228090 A G LEPRE1 Silent p.P174P 0.30 TCGA-EE-A20C-06 1 43665161 43665161 G A WDR65 Missense_Mutation p.G510E 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 43772943 43772943 G A TIE1 Silent p.Q257Q 0.69 TCGA-EE-A20C-06 1 43881772 43881772 G A SZT2 Missense_Mutation p.G258R 0.74 deleterious(0.02) benign(0.12) TCGA-EE-A20C-06 1 43885473 43885473 C T SZT2 Silent p.I316I 0.93 TCGA-EE-A20C-06 1 43903334 43903334 C T SZT2 Missense_Mutation p.S2063F 0.75 deleterious(0.04) probably_damaging(0.968) TCGA-EE-A20C-06 1 45294203 45294203 G A PTCH2 Missense_Mutation p.P522L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 46034238 46034238 C T AKR1A1 Missense_Mutation p.P212S 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A20C-06 1 46978056 46978056 C T DMBX1 Silent p.L342L 0.74 TCGA-EE-A20C-06 1 46978206 46978206 C T DMBX1 3'UTR 0.71 TCGA-EE-A20C-06 1 47279220 47279220 G A CYP4B1 Missense_Mutation p.A188T 0.79 tolerated(1) benign(0.058) TCGA-EE-A20C-06 1 47279584 47279584 G A CYP4B1 Silent p.R208R 0.15 TCGA-EE-A20C-06 1 47348866 47348866 G A CYP4Z2P RNA 0.63 TCGA-EE-A20C-06 1 47515112 47515112 T C CYP4X1 Missense_Mutation p.F431L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 47534382 47534382 T A CYP4Z1 Missense_Mutation p.M89K 0.71 deleterious(0.02) benign(0.022) TCGA-EE-A20C-06 1 47583656 47583656 G A CYP4Z1 3'UTR 0.82 TCGA-EE-A20C-06 1 47606542 47606542 C T CYP4A22 Missense_Mutation p.R96C 0.20 tolerated(0.08) possibly_damaging(0.848) TCGA-EE-A20C-06 1 47753279 47753279 G A STIL Silent p.S359S 0.77 TCGA-EE-A20C-06 1 48694858 48694858 T A SLC5A9 Intron 0.24 TCGA-EE-A20C-06 1 52824027 52824027 G A CC2D1B Silent p.A479A 0.81 TCGA-EE-A20C-06 1 52849539 52849539 C T ORC1 Missense_Mutation p.G609E 0.71 deleterious(0) benign(0.219) TCGA-EE-A20C-06 1 53262457 53262457 G A ZYG11B Splice_Site p.X495_splice 0.69 TCGA-EE-A20C-06 1 53546449 53546449 C T PODN Missense_Mutation p.P569L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 1 53684091 53684091 G A C1orf123 Missense_Mutation p.S75F 0.61 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 1 54060103 54060103 C T GLIS1 Missense_Mutation p.G158E 0.79 tolerated(0.09) benign(0.439) TCGA-EE-A20C-06 1 55277554 55277554 G A C1orf177 Missense_Mutation p.E190K 0.77 tolerated(0.39) benign(0.061) TCGA-EE-A20C-06 1 55277780 55277780 G A C1orf177 Missense_Mutation p.R227Q 0.71 tolerated(0.15) benign(0.035) TCGA-EE-A20C-06 1 57161759 57161759 C T PRKAA2 Missense_Mutation p.R239C 0.72 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A20C-06 1 57320593 57320593 T A C8A Missense_Mutation p.F7I 0.21 tolerated(0.14) benign(0.116) TCGA-EE-A20C-06 1 57422539 57422539 T C C8B Silent p.E98E 0.72 TCGA-EE-A20C-06 1 57536726 57536726 C T DAB1 Silent p.L189L 0.62 TCGA-EE-A20C-06 1 60133042 60133042 C A FGGY Missense_Mutation p.P486T 0.70 tolerated(0.06) benign(0.015) TCGA-EE-A20C-06 1 60314036 60314036 C T HOOK1 Missense_Mutation p.R327C 0.77 deleterious(0) probably_damaging(0.986) TCGA-EE-A20C-06 1 60506693 60506693 C T C1orf87 Silent p.Q151Q 0.21 TCGA-EE-A20C-06 1 62739650 62739650 C T KANK4 Missense_Mutation p.E376K 0.19 tolerated(0.1) benign(0.005) TCGA-EE-A20C-06 1 65139132 65139132 C T CACHD1 Silent p.F853F 0.70 TCGA-EE-A20C-06 1 70503858 70503858 T C LRRC7 Missense_Mutation p.V746A 0.71 tolerated_low_confidence(1) benign(0) TCGA-EE-A20C-06 1 75086491 75086491 A C C1orf173 Missense_Mutation p.D309E 0.78 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A20C-06 1 7723499 7723499 G A CAMTA1 Missense_Mutation p.G298R 0.22 deleterious(0.01) possibly_damaging(0.734) TCGA-EE-A20C-06 1 7796526 7796526 C T CAMTA1 Silent p.F1063F 0.57 TCGA-EE-A20C-06 1 7796527 7796527 C T CAMTA1 Missense_Mutation p.R1064C 0.57 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 1 7863776 7863776 C T PER3 Missense_Mutation p.P334L 0.59 deleterious(0) probably_damaging(0.975) TCGA-EE-A20C-06 1 7910940 7910940 C T UTS2 Missense_Mutation p.R64K 0.26 deleterious(0.02) possibly_damaging(0.477) TCGA-EE-A20C-06 1 79383564 79383564 C T ELTD1 Missense_Mutation p.V545I 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 1 82434924 82434924 C T LPHN2 Silent p.S845S 0.62 TCGA-EE-A20C-06 1 8384545 8384545 G A SLC45A1 Silent p.R52R 0.68 TCGA-EE-A20C-06 1 8384550 8384550 A C SLC45A1 Missense_Mutation p.K54T 0.70 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A20C-06 1 8418865 8418865 G A RERE Missense_Mutation p.P1244S 0.67 unknown(0) TCGA-EE-A20C-06 1 85029459 85029459 G A CTBS Missense_Mutation p.P252S 0.69 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 1 879085 879085 G A SAMD11 Missense_Mutation p.R566K 0.25 tolerated(0.3) probably_damaging(0.977) TCGA-EE-A20C-06 1 879086 879086 G A SAMD11 Silent p.R566R 0.25 TCGA-EE-A20C-06 1 8925417 8925417 G A ENO1 Silent p.P264P 0.56 TCGA-EE-A20C-06 1 8925418 8925418 G A ENO1 Missense_Mutation p.P264L 0.55 deleterious_low_confidence(0.01) benign(0.105) TCGA-EE-A20C-06 1 90398923 90398923 C T LRRC8D Missense_Mutation p.S99F 0.65 tolerated(0.08) benign(0.172) TCGA-EE-A20C-06 1 9074901 9074901 C T SLC2A7 Missense_Mutation p.D248N 0.92 tolerated(0.19) benign(0.068) TCGA-EE-A20C-06 1 9086357 9086357 C T SLC2A7 Silent p.E16E 0.80 TCGA-EE-A20C-06 1 91382403 91382403 G A ZNF644 Silent p.S1312S 0.11 TCGA-EE-A20C-06 1 94639588 94639588 T G ARHGAP29 Missense_Mutation p.D1208A 0.90 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A20C-06 1 94650546 94650546 C T ARHGAP29 Missense_Mutation p.G664E 0.12 deleterious(0.03) probably_damaging(1) TCGA-EE-A20C-06 1 95538480 95538480 C T ALG14 5'UTR 0.25 TCGA-EE-A20C-06 1 97839171 97839171 A T DPYD Missense_Mutation p.N668K 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 20 10023879 10023879 A C ANKEF1 Silent p.I152I 0.39 TCGA-EE-A20C-06 20 13695813 13695813 A C ESF1 Missense_Mutation p.V755G 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 20 13763243 13763243 C T ESF1 Missense_Mutation p.E182K 0.43 tolerated_low_confidence(1) benign(0) TCGA-EE-A20C-06 20 17475348 17475348 C T BFSP1 Missense_Mutation p.E457K 0.51 tolerated(0.59) probably_damaging(0.929) TCGA-EE-A20C-06 20 18163821 18163821 C T CSRP2BP Silent p.S621S 0.36 TCGA-EE-A20C-06 20 18295991 18295991 T C ZNF133 Missense_Mutation p.F165L 0.49 tolerated(0.33) benign(0.005) TCGA-EE-A20C-06 20 18374412 18374412 G A DZANK1 Silent p.I584I 0.34 TCGA-EE-A20C-06 20 18470357 18470357 G A RBBP9 3'UTR 0.38 TCGA-EE-A20C-06 20 19981314 19981314 C T RIN2 Missense_Mutation p.L857F 0.44 tolerated(0.09) possibly_damaging(0.859) TCGA-EE-A20C-06 20 20018028 20018028 C T CRNKL1 Missense_Mutation p.R773K 0.51 tolerated(1) benign(0.003) TCGA-EE-A20C-06 20 20026060 20026060 A G CRNKL1 Silent p.F392F 0.45 TCGA-EE-A20C-06 20 23728483 23728483 G A CST1 Silent p.S132S 0.44 TCGA-EE-A20C-06 20 24523950 24523950 C T SYNDIG1 Silent p.L73L 0.43 TCGA-EE-A20C-06 20 2473408 2473408 G A ZNF343 Missense_Mutation p.P81S 0.35 tolerated(0.75) benign(0.001) TCGA-EE-A20C-06 20 257922 257922 G A C20orf96 Missense_Mutation p.S223F 0.48 tolerated(0.1) probably_damaging(0.971) TCGA-EE-A20C-06 20 2795823 2795823 C T C20orf141 5'UTR 0.49 TCGA-EE-A20C-06 20 30028470 30028470 G A DEFB123 5'UTR 0.40 TCGA-EE-A20C-06 20 30226841 30226841 G A COX4I2 Nonsense_Mutation p.W7* 0.43 TCGA-EE-A20C-06 20 30610566 30610566 C T CCM2L Missense_Mutation p.S346F 0.50 deleterious(0) probably_damaging(0.931) TCGA-EE-A20C-06 20 30904023 30904023 C T KIF3B Silent p.A469A 0.47 TCGA-EE-A20C-06 20 31571638 31571638 C T SUN5 Missense_Mutation p.E368K 0.51 tolerated_low_confidence(0.14) benign(0.015) TCGA-EE-A20C-06 20 3268354 3268354 C T C20orf194 Missense_Mutation p.E804K 0.48 tolerated(0.06) benign(0.423) TCGA-EE-A20C-06 20 33345302 33345302 G A NCOA6 Missense_Mutation p.P417S 0.52 possibly_damaging(0.521) TCGA-EE-A20C-06 20 33581265 33581265 G A MYH7B Silent p.L854L 0.75 TCGA-EE-A20C-06 20 33760002 33760002 C T PROCR Silent p.A15A 0.44 TCGA-EE-A20C-06 20 33874259 33874259 G A FAM83C 3'UTR 0.45 TCGA-EE-A20C-06 20 34214016 34214016 G A CPNE1 3'UTR 0.43 TCGA-EE-A20C-06 20 34241216 34241216 G A RBM12 Silent p.L677L 0.46 TCGA-EE-A20C-06 20 34535568 34535568 C T PHF20 3'UTR 0.47 TCGA-EE-A20C-06 20 34572684 34572684 C T CNBD2 Missense_Mutation p.R234W 0.49 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 20 34807691 34807691 G A EPB41L1 Silent p.G788G 0.39 TCGA-EE-A20C-06 20 36640256 36640256 G A TTI1 Missense_Mutation p.P655S 0.53 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A20C-06 20 36869144 36869144 G A KIAA1755 Silent p.S463S 0.31 TCGA-EE-A20C-06 20 36869145 36869145 G A KIAA1755 Missense_Mutation p.S463F 0.33 tolerated(0.07) benign(0.01) TCGA-EE-A20C-06 20 37601254 37601254 T C DHX35 Missense_Mutation p.V76A 0.42 deleterious(0) benign(0.16) TCGA-EE-A20C-06 20 40045287 40045287 G A CHD6 Missense_Mutation p.P2143S 0.51 tolerated(0.37) benign(0.014) TCGA-EE-A20C-06 20 40877330 40877330 C T PTPRT Missense_Mutation p.R770K 0.44 tolerated(0.71) probably_damaging(0.952) TCGA-EE-A20C-06 20 43348728 43348728 C T WISP2 Missense_Mutation p.P84L 0.62 tolerated(0.1) benign(0.009) TCGA-EE-A20C-06 20 43348729 43348729 C T WISP2 Silent p.P84P 0.62 TCGA-EE-A20C-06 20 44237382 44237382 C T WFDC9 Silent p.R53R 0.48 TCGA-EE-A20C-06 20 44237383 44237383 C T WFDC9 Missense_Mutation p.R53K 0.46 tolerated(0.16) possibly_damaging(0.509) TCGA-EE-A20C-06 20 44506155 44506155 C T ZSWIM3 Missense_Mutation p.R320C 0.48 deleterious(0.01) possibly_damaging(0.817) TCGA-EE-A20C-06 20 44519216 44519216 G A NEURL2 Missense_Mutation p.P139S 0.65 tolerated(0.59) benign(0.002) TCGA-EE-A20C-06 20 44521078 44521078 C T CTSA Silent p.G151G 0.19 TCGA-EE-A20C-06 20 44596754 44596754 G A ZNF335 Intron 0.69 TCGA-EE-A20C-06 20 44678397 44678397 G A SLC12A5 Missense_Mutation p.E740K 0.42 tolerated(0.26) benign(0.009) TCGA-EE-A20C-06 20 45874881 45874881 G A ZMYND8 Missense_Mutation p.P719S 0.40 deleterious_low_confidence(0.04) benign(0.142) TCGA-EE-A20C-06 20 4705609 4705609 G A PRND Missense_Mutation p.E138K 0.57 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-EE-A20C-06 20 4705663 4705663 C T PRND Missense_Mutation p.R156W 0.44 deleterious_low_confidence(0.04) probably_damaging(0.965) TCGA-EE-A20C-06 20 47273652 47273652 C T PREX1 Silent p.E683E 0.35 TCGA-EE-A20C-06 20 47567936 47567936 T A ARFGEF2 Missense_Mutation p.I118N 0.38 deleterious(0) possibly_damaging(0.781) TCGA-EE-A20C-06 20 47606130 47606130 G A ARFGEF2 Missense_Mutation p.G908E 0.48 deleterious(0) possibly_damaging(0.573) TCGA-EE-A20C-06 20 47989982 47989982 G A KCNB1 Silent p.V705V 0.37 TCGA-EE-A20C-06 20 49446839 49446839 C T BCAS4 Silent p.I92I 0.33 TCGA-EE-A20C-06 20 50346390 50346390 A T ATP9A Missense_Mutation p.F66I 0.43 tolerated(0.5) benign(0.008) TCGA-EE-A20C-06 20 55111444 55111444 C T FAM209B Missense_Mutation p.P156S 0.45 tolerated(0.07) benign(0.144) TCGA-EE-A20C-06 20 55982669 55982669 C T RBM38 Missense_Mutation p.P163S 0.50 tolerated(0.24) benign(0.196) TCGA-EE-A20C-06 20 57781969 57781969 G A ZNF831 Silent p.G1295G 0.42 TCGA-EE-A20C-06 20 60512083 60512083 C T CDH4 3'UTR 0.50 TCGA-EE-A20C-06 20 60768522 60768522 C T MTG2 Nonsense_Mutation p.Q16* 0.26 TCGA-EE-A20C-06 20 60895934 60895934 C T LAMA5 Missense_Mutation p.C2170Y 0.45 benign(0.006) TCGA-EE-A20C-06 20 60901952 60901952 G A LAMA5 Missense_Mutation p.P1728L 0.25 benign(0.003) TCGA-EE-A20C-06 20 60901953 60901953 G A LAMA5 Missense_Mutation p.P1728S 0.26 benign(0) TCGA-EE-A20C-06 20 60990934 60990934 G A RBBP8NL Missense_Mutation p.P152S 0.50 tolerated(0.07) possibly_damaging(0.835) TCGA-EE-A20C-06 20 61512521 61512521 G A DIDO1 Missense_Mutation p.S1596F 0.33 benign(0.271) TCGA-EE-A20C-06 20 61588800 61588800 G A SLC17A9 Missense_Mutation p.G89S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 20 61978120 61978120 G A CHRNA4 Silent p.F618F 0.40 TCGA-EE-A20C-06 20 62076635 62076635 C T KCNQ2 Nonsense_Mutation p.W157* 0.49 TCGA-EE-A20C-06 20 62738121 62738121 C T NPBWR2 Missense_Mutation p.G22S 0.43 tolerated(0.1) benign(0.021) TCGA-EE-A20C-06 20 76660 76660 C T DEFB125 Nonsense_Mutation p.Q25* 0.30 TCGA-EE-A20C-06 20 8720001 8720001 C T PLCB1 Missense_Mutation p.R768W 0.45 deleterious(0) probably_damaging(0.986) TCGA-EE-A20C-06 20 9510551 9510551 G A LAMP5 3'UTR 0.73 TCGA-EE-A20C-06 20 9546766 9546766 G A PAK7 Missense_Mutation p.S419F 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A20C-06 21 15755485 15755485 G A HSPA13 5'UTR 0.43 TCGA-EE-A20C-06 21 30934004 30934004 T C GRIK1 Missense_Mutation p.N766S 0.41 deleterious(0) probably_damaging(0.961) TCGA-EE-A20C-06 21 31812928 31812928 C T KRTAP15-1 Missense_Mutation p.L95F 0.43 tolerated(0.07) benign(0.243) TCGA-EE-A20C-06 21 32127610 32127610 G C KRTAP21-1 Silent p.G29G 0.53 TCGA-EE-A20C-06 21 33362477 33362477 C T HUNK Silent p.F431F 0.50 TCGA-EE-A20C-06 21 34053870 34053870 G A SYNJ1 Missense_Mutation p.S469F 0.47 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A20C-06 21 34945679 34945679 C G SON Silent p.G2317G 0.34 TCGA-EE-A20C-06 21 37418270 37418270 G A SETD4 Silent p.T112T 0.44 TCGA-EE-A20C-06 21 38390454 38390454 C T RIPPLY3 Missense_Mutation p.P174S 0.25 tolerated_low_confidence(0.12) benign(0.004) TCGA-EE-A20C-06 21 38539913 38539913 G A TTC3 Silent p.E1486E 0.51 TCGA-EE-A20C-06 21 39772567 39772567 C T ERG Missense_Mutation p.G232E 0.37 tolerated(0.16) benign(0.257) TCGA-EE-A20C-06 21 40762755 40762755 G A WRB Silent p.K78K 0.39 TCGA-EE-A20C-06 21 41164019 41164019 G A IGSF5 Silent p.K347K 0.44 TCGA-EE-A20C-06 21 41165490 41165490 G A IGSF5 Missense_Mutation p.E360K 0.52 tolerated(0.35) possibly_damaging(0.636) TCGA-EE-A20C-06 21 41384998 41384998 C T DSCAM Missense_Mutation p.G2001E 0.43 deleterious_low_confidence(0.01) benign(0.034) TCGA-EE-A20C-06 21 41414346 41414346 C T DSCAM Missense_Mutation p.D1880N 0.38 deleterious(0) probably_damaging(0.99) TCGA-EE-A20C-06 21 41668001 41668001 G A DSCAM Silent p.I721I 0.44 TCGA-EE-A20C-06 21 43767736 43767736 C T TFF2 Missense_Mutation p.D79N 0.70 tolerated(0.55) benign(0.001) TCGA-EE-A20C-06 21 44485800 44485800 C T CBS Missense_Mutation p.G153R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 21 44590650 44590650 C T CRYAA Silent p.F71F 0.43 TCGA-EE-A20C-06 21 44840298 44840298 G A SIK1 Missense_Mutation p.P263L 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 21 45679336 45679336 T A DNMT3L Missense_Mutation p.N110Y 0.41 deleterious(0) benign(0.39) TCGA-EE-A20C-06 21 45799070 45799070 G A TRPM2 Nonsense_Mutation p.W402* 0.51 TCGA-EE-A20C-06 21 45970605 45970605 C T KRTAP10-2 Missense_Mutation p.S246N 0.35 tolerated(0.2) unknown(0) TCGA-EE-A20C-06 21 45970719 45970719 G A KRTAP10-2 Missense_Mutation p.P208L 0.41 tolerated(1) unknown(0) TCGA-EE-A20C-06 21 46074170 46074170 G A KRTAP12-4 3'UTR 0.55 TCGA-EE-A20C-06 21 46306678 46306678 C T ITGB2 Silent p.K740K 0.28 TCGA-EE-A20C-06 21 47541503 47541503 C T COL6A2 Missense_Mutation p.R498C 0.67 deleterious(0) probably_damaging(0.986) TCGA-EE-A20C-06 21 47545922 47545922 G A COL6A2 Silent p.T731T 0.55 TCGA-EE-A20C-06 21 47831555 47831555 C T PCNT Silent p.I1856I 0.26 TCGA-EE-A20C-06 21 47831556 47831556 C T PCNT Nonsense_Mutation p.Q1857* 0.30 TCGA-EE-A20C-06 21 48081834 48081834 C T PRMT2 Silent p.T361T 0.71 TCGA-EE-A20C-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.11 TCGA-EE-A20C-06 22 16287524 16287524 C T POTEH Missense_Mutation p.G121E 0.38 tolerated_low_confidence(0.2) benign(0.094) TCGA-EE-A20C-06 22 18300713 18300713 C T MICAL3 Missense_Mutation p.E1572K 0.43 benign(0.129) TCGA-EE-A20C-06 22 18382265 18382265 G A MICAL3 Silent p.F299F 0.33 TCGA-EE-A20C-06 22 18846095 18846095 G A BCRP7 RNA 0.17 TCGA-EE-A20C-06 22 19124933 19124933 G A DGCR14 Missense_Mutation p.S313F 0.44 deleterious(0) probably_damaging(0.938) TCGA-EE-A20C-06 22 19483551 19483551 C T CDC45 Missense_Mutation p.S229L 0.47 deleterious(0) probably_damaging(0.981) TCGA-EE-A20C-06 22 20024551 20024551 C T TANGO2 Intron 0.45 TCGA-EE-A20C-06 22 21340161 21340161 G A LZTR1 Missense_Mutation p.D99N 0.44 tolerated(0.14) probably_damaging(0.947) TCGA-EE-A20C-06 22 22277638 22277638 G A PPM1F Missense_Mutation p.R398W 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 22 22277639 22277639 G A PPM1F Silent p.A397A 0.46 TCGA-EE-A20C-06 22 23090318 23090318 G A IGLV3-16 Missense_Mutation p.G86E 0.33 deleterious(0.03) possibly_damaging(0.892) TCGA-EE-A20C-06 22 23438415 23438415 C T GNAZ Missense_Mutation p.S178F 0.50 deleterious(0) probably_damaging(0.939) TCGA-EE-A20C-06 22 24086713 24086713 G A ZNF70 Silent p.F205F 0.38 TCGA-EE-A20C-06 22 26165047 26165047 C T MYO18B Silent p.S388S 0.46 TCGA-EE-A20C-06 22 26228957 26228957 C T MYO18B Missense_Mutation p.P1018L 0.46 tolerated(0.07) benign(0.333) TCGA-EE-A20C-06 22 26228958 26228958 C T MYO18B Silent p.P1018P 0.45 TCGA-EE-A20C-06 22 27012187 27012187 G A CRYBB1 Missense_Mutation p.P33S 0.41 tolerated(0.27) benign(0.039) TCGA-EE-A20C-06 22 29885312 29885312 G A NEFH Silent p.P561P 0.11 TCGA-EE-A20C-06 22 29954921 29954921 C T NIPSNAP1 Missense_Mutation p.R243Q 0.45 deleterious(0) probably_damaging(0.934) TCGA-EE-A20C-06 22 30403281 30403281 G A MTMR3 Missense_Mutation p.G284R 0.42 deleterious(0.04) benign(0.045) TCGA-EE-A20C-06 22 30416035 30416035 T C MTMR3 Missense_Mutation p.F796S 0.45 tolerated_low_confidence(0.5) benign(0) TCGA-EE-A20C-06 22 30660431 30660431 A G OSM Missense_Mutation p.V67A 0.52 tolerated(0.17) benign(0.037) TCGA-EE-A20C-06 22 31334049 31334049 C T MORC2 Intron 0.57 TCGA-EE-A20C-06 22 31337889 31337889 G A MORC2 Silent p.S167S 0.47 TCGA-EE-A20C-06 22 31337890 31337890 G A MORC2 Missense_Mutation p.S167F 0.47 tolerated(0.33) benign(0.009) TCGA-EE-A20C-06 22 31533712 31533712 A G PLA2G3 Silent p.G350G 0.50 TCGA-EE-A20C-06 22 32302489 32302489 G A DEPDC5 3'UTR 0.50 TCGA-EE-A20C-06 22 32631046 32631046 G A SLC5A4 Silent p.T233T 0.57 TCGA-EE-A20C-06 22 32631047 32631047 G A SLC5A4 Missense_Mutation p.T233I 0.55 tolerated(0.4) benign(0.049) TCGA-EE-A20C-06 22 32756380 32756380 C T RFPL3 Missense_Mutation p.S172F 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A20C-06 22 32828360 32828360 G A BPIFC Silent p.F383F 0.44 TCGA-EE-A20C-06 22 35719514 35719514 C T TOM1 Missense_Mutation p.S131L 0.62 deleterious(0.01) benign(0.063) TCGA-EE-A20C-06 22 36876737 36876737 G A TXN2 Missense_Mutation p.R50W 0.48 deleterious(0) probably_damaging(0.959) TCGA-EE-A20C-06 22 36876738 36876738 G A TXN2 Silent p.A49A 0.48 TCGA-EE-A20C-06 22 37457666 37457666 C T KCTD17 Missense_Mutation p.P274L 0.38 tolerated_low_confidence(0.23) benign(0.04) TCGA-EE-A20C-06 22 38208989 38208989 C T GCAT Silent p.L167L 0.44 TCGA-EE-A20C-06 22 38208991 38208991 T C GCAT Missense_Mutation p.F168S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 22 38321962 38321962 C T MICALL1 Silent p.S459S 0.40 TCGA-EE-A20C-06 22 38864194 38864194 C T KDELR3 5'UTR 0.47 TCGA-EE-A20C-06 22 39146965 39146965 C T SUN2 Missense_Mutation p.R121H 0.48 deleterious(0.01) benign(0.136) TCGA-EE-A20C-06 22 40351847 40351847 T C GRAP2 Missense_Mutation p.F35L 0.32 tolerated(0.33) benign(0.012) TCGA-EE-A20C-06 22 40708540 40708540 C T TNRC6B Silent p.I1489I 0.49 TCGA-EE-A20C-06 22 40814595 40814595 G A MKL1 Missense_Mutation p.P616L 0.43 tolerated(0.35) benign(0) TCGA-EE-A20C-06 22 40820219 40820219 G A MKL1 Silent p.S156S 0.47 TCGA-EE-A20C-06 22 41621026 41621026 C T L3MBTL2 Missense_Mutation p.A436V 0.42 deleterious(0.05) probably_damaging(0.918) TCGA-EE-A20C-06 22 41735895 41735895 G A ZC3H7B Missense_Mutation p.G298R 0.38 tolerated(0.14) probably_damaging(0.994) TCGA-EE-A20C-06 22 41864689 41864689 C T PHF5A 5'UTR 0.40 TCGA-EE-A20C-06 22 41919875 41919875 C T ACO2 Missense_Mutation p.S471F 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A20C-06 22 41980374 41980374 G A PMM1 Silent p.T95T 0.40 TCGA-EE-A20C-06 22 42071061 42071061 G A NHP2L1 Missense_Mutation p.A88V 0.41 deleterious(0) possibly_damaging(0.831) TCGA-EE-A20C-06 22 42209274 42209274 C A CCDC134 Missense_Mutation p.S106Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 22 43287041 43287041 T C PACSIN2 Missense_Mutation p.K122R 0.46 tolerated(0.21) probably_damaging(0.958) TCGA-EE-A20C-06 22 43976365 43976365 G A EFCAB6 Silent p.S1069S 0.44 TCGA-EE-A20C-06 22 44645412 44645412 G A KIAA1644 3'UTR 0.56 TCGA-EE-A20C-06 22 45755719 45755719 A G SMC1B Missense_Mutation p.L943S 0.41 tolerated(0.13) probably_damaging(0.945) TCGA-EE-A20C-06 22 46653070 46653070 C T PKDREJ Missense_Mutation p.M2050I 0.42 tolerated(0.07) benign(0.063) TCGA-EE-A20C-06 22 50502618 50502618 C T MLC1 Missense_Mutation p.D302N 0.37 deleterious_low_confidence(0) benign(0.035) TCGA-EE-A20C-06 22 50728219 50728219 C A PLXNB2 Missense_Mutation p.Q265H 0.35 tolerated(0.12) benign(0.006) TCGA-EE-A20C-06 22 50898552 50898552 G A SBF1 Missense_Mutation p.S1107F 0.48 deleterious(0.05) possibly_damaging(0.61) TCGA-EE-A20C-06 22 51049160 51049160 G A MAPK8IP2 Missense_Mutation p.E809K 0.59 tolerated(0.1) benign(0.364) TCGA-EE-A20C-06 22 51143463 51143463 C T SHANK3 Silent p.R672R 0.48 TCGA-EE-A20C-06 22 51143464 51143464 C T SHANK3 Missense_Mutation p.L673F 0.50 probably_damaging(1) TCGA-EE-A20C-06 2 101564765 101564765 C T NPAS2 Silent p.I144I 0.16 TCGA-EE-A20C-06 2 103010932 103010932 G A IL18R1 Missense_Mutation p.G372E 0.70 deleterious(0) probably_damaging(0.951) TCGA-EE-A20C-06 2 103068736 103068736 G A IL18RAP 3'UTR 0.92 TCGA-EE-A20C-06 2 103095719 103095719 G A SLC9A4 Missense_Mutation p.M226I 0.48 tolerated(1) benign(0.057) TCGA-EE-A20C-06 2 103136326 103136326 G A SLC9A4 Missense_Mutation p.R577K 0.33 tolerated(0.33) benign(0.01) TCGA-EE-A20C-06 2 103274237 103274237 G A SLC9A2 Silent p.T168T 0.59 TCGA-EE-A20C-06 2 105654500 105654500 C T MRPS9 5'UTR 0.75 TCGA-EE-A20C-06 2 107450575 107450575 T G ST6GAL2 Missense_Mutation p.N324T 0.35 probably_damaging(0.999) TCGA-EE-A20C-06 2 107460079 107460079 T A ST6GAL2 Nonsense_Mutation p.K119* 0.35 TCGA-EE-A20C-06 2 109389502 109389502 A C RANBP2 Missense_Mutation p.Q2764H 0.24 tolerated(0.08) benign(0.178) TCGA-EE-A20C-06 2 109527359 109527359 C G EDAR Intron 0.31 TCGA-EE-A20C-06 2 111414627 111414627 G A BUB1 Missense_Mutation p.P562S 0.67 tolerated(0.54) benign(0.007) TCGA-EE-A20C-06 2 113532801 113532801 T C IL1A Missense_Mutation p.N220S 0.56 tolerated(0.11) possibly_damaging(0.728) TCGA-EE-A20C-06 2 11362253 11362253 G A ROCK2 Missense_Mutation p.P352L 0.41 tolerated(0.23) benign(0.01) TCGA-EE-A20C-06 2 113820070 113820070 C T IL36RN Missense_Mutation p.S95F 0.53 deleterious(0) possibly_damaging(0.842) TCGA-EE-A20C-06 2 113942555 113942555 C T PSD4 Missense_Mutation p.P360S 0.57 tolerated_low_confidence(0.43) benign(0.001) TCGA-EE-A20C-06 2 114513101 114513101 G A SLC35F5 Missense_Mutation p.P21S 0.22 tolerated_low_confidence(0.43) benign(0.023) TCGA-EE-A20C-06 2 11913796 11913796 A G LPIN1 Missense_Mutation p.N265S 0.43 tolerated(0.4) benign(0.002) TCGA-EE-A20C-06 2 121747404 121747404 C T GLI2 Missense_Mutation p.P1305L 0.46 tolerated_low_confidence(0.07) benign(0.086) TCGA-EE-A20C-06 2 125405377 125405377 T A CNTNAP5 Missense_Mutation p.L639Q 0.33 tolerated(0.13) probably_damaging(0.987) TCGA-EE-A20C-06 2 128341880 128341880 C T MYO7B Silent p.L509L 0.22 TCGA-EE-A20C-06 2 128341881 128341881 C T MYO7B Silent p.L510L 0.22 TCGA-EE-A20C-06 2 128389279 128389279 G A MYO7B Missense_Mutation p.D1708N 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 2 128394369 128394369 G A MYO7B Missense_Mutation p.D2044N 0.62 deleterious(0.04) benign(0.069) TCGA-EE-A20C-06 2 130725897 130725897 G A RAB6C-AS1 RNA 0.20 TCGA-EE-A20C-06 2 130832843 130832843 G A POTEF Silent p.I734I 0.47 TCGA-EE-A20C-06 2 130914230 130914230 G A SMPD4 Silent p.F411F 0.38 TCGA-EE-A20C-06 2 132021792 132021792 G A POTEE Missense_Mutation p.D922N 0.14 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-EE-A20C-06 2 133539940 133539940 C T NCKAP5 Missense_Mutation p.E1482K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20C-06 2 136026661 136026661 C T ZRANB3 Nonsense_Mutation p.W419* 0.29 TCGA-EE-A20C-06 2 136574996 136574996 T G LCT Missense_Mutation p.H541P 0.67 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A20C-06 2 136627886 136627886 G A MCM6 Silent p.D100D 0.59 TCGA-EE-A20C-06 2 137813998 137813998 G A THSD7B Missense_Mutation p.G50R 0.59 deleterious(0) probably_damaging(0.979) TCGA-EE-A20C-06 2 137814036 137814036 G A THSD7B Silent p.Q62Q 0.62 TCGA-EE-A20C-06 2 137814319 137814319 G A THSD7B Missense_Mutation p.E157K 0.59 tolerated(0.52) benign(0.316) TCGA-EE-A20C-06 2 137917931 137917931 G A THSD7B Silent p.G506G 0.38 TCGA-EE-A20C-06 2 138420994 138420994 G A THSD7B Missense_Mutation p.M1503I 0.55 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 2 141660713 141660713 C T LRP1B Missense_Mutation p.G1181E 0.31 probably_damaging(0.931) TCGA-EE-A20C-06 2 149226998 149226998 A G MBD5 Missense_Mutation p.T496A 0.66 tolerated_low_confidence(0.7) benign(0.388) TCGA-EE-A20C-06 2 149853789 149853789 G A KIF5C Missense_Mutation p.E679K 0.26 tolerated(0.37) benign(0.004) TCGA-EE-A20C-06 2 149866805 149866805 C T KIF5C Missense_Mutation p.R903C 0.45 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 2 152528985 152528985 G A NEB Silent p.V1399V 0.26 TCGA-EE-A20C-06 2 153475482 153475482 G A FMNL2 Silent p.G479G 0.30 TCGA-EE-A20C-06 2 154801077 154801077 T A GALNT13 Missense_Mutation p.F23I 0.32 tolerated(0.15) benign(0.01) TCGA-EE-A20C-06 2 155099233 155099233 G A GALNT13 Silent p.E167E 0.68 TCGA-EE-A20C-06 2 15615878 15615878 G A NBAS Missense_Mutation p.S425F 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 2 160076229 160076229 G A TANC1 Missense_Mutation p.E1177K 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20C-06 2 160289765 160289765 G A BAZ2B Missense_Mutation p.P468L 0.32 possibly_damaging(0.713) TCGA-EE-A20C-06 2 160735848 160735848 C T LY75-CD302 Silent p.E479E 0.53 TCGA-EE-A20C-06 2 16082277 16082277 G A MYCN Missense_Mutation p.D31N 0.40 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 2 161025819 161025819 C T ITGB6 Splice_Site p.X308_splice 0.32 TCGA-EE-A20C-06 2 162719562 162719562 G A SLC4A10 Missense_Mutation p.M252I 0.28 tolerated(0.15) benign(0.048) TCGA-EE-A20C-06 2 163279763 163279763 G A KCNH7 Intron 0.25 TCGA-EE-A20C-06 2 167142945 167142945 C T SCN9A Silent p.S501S 0.34 TCGA-EE-A20C-06 2 168074800 168074800 G A XIRP2 Missense_Mutation p.R283K 0.58 benign(0.007) TCGA-EE-A20C-06 2 169023827 169023827 T G STK39 Missense_Mutation p.M138L 0.24 tolerated(0.16) possibly_damaging(0.844) TCGA-EE-A20C-06 2 176856966 176856966 G A KIAA1715 Missense_Mutation p.P84S 0.19 deleterious(0) probably_damaging(0.961) TCGA-EE-A20C-06 2 17697522 17697522 C T RAD51AP2 Missense_Mutation p.E721K 0.44 tolerated(0.17) benign(0.111) TCGA-EE-A20C-06 2 17697900 17697900 T G RAD51AP2 Missense_Mutation p.T595P 0.30 tolerated(0.06) probably_damaging(0.93) TCGA-EE-A20C-06 2 17698746 17698746 C T RAD51AP2 Missense_Mutation p.D313N 0.50 tolerated(0.06) benign(0.28) TCGA-EE-A20C-06 2 179395115 179395115 T C TTN Silent p.E35409E 0.31 TCGA-EE-A20C-06 2 179398942 179398942 C T TTN Missense_Mutation p.E34134K 0.17 TCGA-EE-A20C-06 2 179413756 179413756 C T TTN Missense_Mutation p.G30866E 0.30 TCGA-EE-A20C-06 2 179416710 179416710 C T TTN Missense_Mutation p.G30306E 0.60 TCGA-EE-A20C-06 2 179417475 179417475 C T TTN Nonsense_Mutation p.W30051* 0.14 TCGA-EE-A20C-06 2 179418818 179418818 C T TTN Missense_Mutation p.D29674N 0.28 TCGA-EE-A20C-06 2 179434450 179434450 T C TTN Missense_Mutation p.K25470R 0.30 TCGA-EE-A20C-06 2 179442799 179442799 C T TTN Missense_Mutation p.E22815K 0.27 TCGA-EE-A20C-06 2 179453853 179453853 G A TTN Missense_Mutation p.P20867S 0.63 TCGA-EE-A20C-06 2 179575621 179575621 G A TTN Silent p.I9401I 0.37 TCGA-EE-A20C-06 2 179577120 179577120 C T TTN Missense_Mutation p.E9177K 0.58 TCGA-EE-A20C-06 2 179604834 179604834 C T TTN Missense_Mutation p.D4376N 0.54 TCGA-EE-A20C-06 2 179636169 179636169 G A TTN Nonsense_Mutation p.Q2629* 0.36 TCGA-EE-A20C-06 2 179665387 179665387 G A TTN Silent p.F106F 0.24 TCGA-EE-A20C-06 2 179736979 179736979 C T CCDC141 Missense_Mutation p.E654K 0.51 tolerated(0.17) benign(0.085) TCGA-EE-A20C-06 2 182780784 182780784 C T SSFA2 Missense_Mutation p.S806F 0.29 deleterious(0.03) benign(0.027) TCGA-EE-A20C-06 2 183291374 183291374 A G PDE1A Intron 0.50 TCGA-EE-A20C-06 2 183291383 183291383 C T PDE1A Intron 0.46 TCGA-EE-A20C-06 2 183821201 183821213 TATTTCCAGATGA - NCKAP1 Frame_Shift_Del p.H717Afs*9 0.09 TCGA-EE-A20C-06 2 187615976 187615976 G A FAM171B Silent p.L280L 0.81 TCGA-EE-A20C-06 2 188248013 188248013 A G CALCRL Missense_Mutation p.L24S 0.36 tolerated(0.74) benign(0) TCGA-EE-A20C-06 2 196718227 196718227 T C DNAH7 Missense_Mutation p.E2874G 0.60 tolerated(0.08) benign(0.099) TCGA-EE-A20C-06 2 196788467 196788467 C T DNAH7 Missense_Mutation p.G1226D 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 2 196866403 196866403 G A DNAH7 Missense_Mutation p.P390L 0.28 tolerated(0.67) benign(0.013) TCGA-EE-A20C-06 2 197183775 197183775 T A HECW2 Missense_Mutation p.E613D 0.18 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A20C-06 2 197584355 197584355 G A CCDC150 Silent p.R710R 0.67 TCGA-EE-A20C-06 2 200137354 200137354 G A SATB2 Silent p.S594S 0.57 TCGA-EE-A20C-06 2 201485964 201485964 G A AOX1 Missense_Mutation p.D666N 0.29 tolerated(0.24) benign(0.012) TCGA-EE-A20C-06 2 202000808 202000808 A T CFLAR Missense_Mutation p.K167N 0.27 deleterious(0) probably_damaging(0.945) TCGA-EE-A20C-06 2 20200319 20200319 T A MATN3 Nonsense_Mutation p.K351* 0.42 TCGA-EE-A20C-06 2 202619391 202619391 G A ALS2 Missense_Mutation p.S492F 0.52 deleterious(0) probably_damaging(0.984) TCGA-EE-A20C-06 2 204591369 204591369 G A CD28 Silent p.L22L 0.75 TCGA-EE-A20C-06 2 204735472 204735472 G A CTLA4 Missense_Mutation p.M91I 0.23 tolerated(0.09) benign(0.001) TCGA-EE-A20C-06 2 206631528 206631528 G T NRP2 Missense_Mutation p.G809V 0.33 tolerated(0.32) benign(0.272) TCGA-EE-A20C-06 2 207170001 207170001 C T ZDBF2 Missense_Mutation p.S250L 0.23 tolerated(0.17) benign(0) TCGA-EE-A20C-06 2 20824492 20824498 GGTCCAC AATCCAT HS1BP3 Splice_Site p.X260_splice 0.11 TCGA-EE-A20C-06 2 211070463 211070463 G A ACADL Missense_Mutation p.H221Y 0.21 deleterious(0.01) benign(0.233) TCGA-EE-A20C-06 2 21229125 21229125 C T APOB Missense_Mutation p.D3539N 0.42 benign(0.137) TCGA-EE-A20C-06 2 212293132 212293132 C T ERBB4 Splice_Site p.X907_splice 0.21 TCGA-EE-A20C-06 2 21231816 21231816 G A APOB Missense_Mutation p.P2642S 0.48 probably_damaging(0.996) TCGA-EE-A20C-06 2 21260128 21260128 C T APOB Splice_Site p.X180_splice 0.40 TCGA-EE-A20C-06 2 215884292 215884292 G A ABCA12 Missense_Mutation p.P506S 0.49 tolerated(0.07) benign(0.005) TCGA-EE-A20C-06 2 215901764 215901764 A C ABCA12 Missense_Mutation p.Y300D 0.32 tolerated(0.13) benign(0.1) TCGA-EE-A20C-06 2 219254752 219254752 G A SLC11A1 Splice_Site p.X318_splice 0.39 TCGA-EE-A20C-06 2 219942890 219942890 G A NHEJ1 Silent p.P209P 0.49 TCGA-EE-A20C-06 2 220493868 220493868 C T SLC4A3 Missense_Mutation p.H74Y 0.67 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A20C-06 2 220505217 220505217 C T SLC4A3 Silent p.L1142L 0.29 TCGA-EE-A20C-06 2 222428586 222428586 G A EPHA4 Nonsense_Mutation p.R230* 0.62 TCGA-EE-A20C-06 2 223559194 223559194 G A MOGAT1 Missense_Mutation p.G198R 0.62 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 2 224749382 224749382 T C WDFY1 Missense_Mutation p.T306A 0.31 tolerated(0.23) probably_damaging(0.91) TCGA-EE-A20C-06 2 224759028 224759028 G T WDFY1 Missense_Mutation p.Q252K 0.20 tolerated(0.86) benign(0.016) TCGA-EE-A20C-06 2 228141171 228141171 T A COL4A3 Missense_Mutation p.H666Q 0.57 unknown(0) TCGA-EE-A20C-06 2 228882108 228882108 C T SPHKAP Silent p.K1154K 0.50 TCGA-EE-A20C-06 2 228883230 228883230 C T SPHKAP Silent p.T780T 0.60 TCGA-EE-A20C-06 2 231973551 231973551 T G HTR2B Missense_Mutation p.N376H 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 2 231973839 231973839 T A HTR2B Nonsense_Mutation p.K280* 0.29 TCGA-EE-A20C-06 2 232263496 232263496 C T B3GNT7 Missense_Mutation p.R356C 0.26 deleterious(0) possibly_damaging(0.776) TCGA-EE-A20C-06 2 232597511 232597511 G A PDE6D 3'UTR 0.78 TCGA-EE-A20C-06 2 234545727 234545727 C T UGT1A10 Missense_Mutation p.L187F 0.61 tolerated(0.32) benign(0.183) TCGA-EE-A20C-06 2 234591146 234591146 C T UGT1A7 Missense_Mutation p.S188F 0.40 deleterious(0) possibly_damaging(0.734) TCGA-EE-A20C-06 2 234627964 234627964 G A UGT1A4 Silent p.S166S 0.60 TCGA-EE-A20C-06 2 234835192 234835192 C T TRPM8 Missense_Mutation p.R4W 0.35 deleterious_low_confidence(0.01) benign(0.006) TCGA-EE-A20C-06 2 240969586 240969586 G A OR6B2 Silent p.L87L 0.45 TCGA-EE-A20C-06 2 242106501 242106501 G A PPP1R7 Intron 0.19 TCGA-EE-A20C-06 2 242742834 242742834 C T GAL3ST2 Silent p.S150S 0.74 TCGA-EE-A20C-06 2 24930584 24930584 C T NCOA1 Silent p.L749L 0.44 TCGA-EE-A20C-06 2 25016001 25016001 G A PTRHD1 Silent p.V82V 0.44 TCGA-EE-A20C-06 2 26724665 26724665 T C OTOF Missense_Mutation p.D241G 0.37 tolerated(0.2) possibly_damaging(0.818) TCGA-EE-A20C-06 2 26800493 26800493 T A C2orf70 Missense_Mutation p.V153D 0.25 tolerated(1) benign(0) TCGA-EE-A20C-06 2 27741759 27741759 G A GCKR Silent p.R509R 0.34 TCGA-EE-A20C-06 2 27799787 27799787 G A C2orf16 Missense_Mutation p.M116I 0.56 tolerated(0.25) benign(0.01) TCGA-EE-A20C-06 2 27799788 27799788 G A C2orf16 Missense_Mutation p.E117K 0.53 tolerated(0.53) benign(0.018) TCGA-EE-A20C-06 2 29294603 29294603 G A C2orf71 Missense_Mutation p.S842L 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 2 29297043 29297043 G A C2orf71 Missense_Mutation p.R29W 0.42 deleterious(0) possibly_damaging(0.784) TCGA-EE-A20C-06 2 29497987 29497987 C T ALK Silent p.Q673Q 0.47 TCGA-EE-A20C-06 2 30966414 30966414 A T CAPN13 Missense_Mutation p.F427Y 0.44 deleterious(0.01) probably_damaging(0.909) TCGA-EE-A20C-06 2 30987153 30987153 C T CAPN13 Missense_Mutation p.D182N 0.64 tolerated(1) benign(0.004) TCGA-EE-A20C-06 2 32773047 32773047 G A BIRC6 Missense_Mutation p.R4314K 0.68 possibly_damaging(0.647) TCGA-EE-A20C-06 2 33498821 33498821 T C LTBP1 Missense_Mutation p.F906L 0.31 tolerated(1) benign(0.001) TCGA-EE-A20C-06 2 36943507 36943507 G A VIT 5'UTR 0.50 TCGA-EE-A20C-06 2 37105036 37105036 C T STRN Missense_Mutation p.D441N 0.43 deleterious(0) probably_damaging(0.947) TCGA-EE-A20C-06 2 39088661 39088661 T C DHX57 Silent p.V297V 0.48 TCGA-EE-A20C-06 2 44569614 44569614 G C PREPL Missense_Mutation p.R232G 0.52 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A20C-06 2 48036402 48036402 T A FBXO11 Missense_Mutation p.N817I 0.39 deleterious(0) probably_damaging(0.98) TCGA-EE-A20C-06 2 48914748 48914748 C T LHCGR 3'UTR 0.50 TCGA-EE-A20C-06 2 48915511 48915511 G A LHCGR Silent p.D475D 0.36 TCGA-EE-A20C-06 2 48936151 48936151 C T LHCGR Missense_Mutation p.E206K 0.47 tolerated(0.47) benign(0.044) TCGA-EE-A20C-06 2 48958396 48958396 G A LHCGR Missense_Mutation p.A68V 0.32 tolerated(0.1) benign(0.432) TCGA-EE-A20C-06 2 51254830 51254830 G A NRXN1 Silent p.V194V 0.45 TCGA-EE-A20C-06 2 60988877 60988877 C T PAPOLG Silent p.L61L 0.49 TCGA-EE-A20C-06 2 61412663 61412663 G T AHSA2 Silent p.L34L 0.48 TCGA-EE-A20C-06 2 61416152 61416152 T A USP34 Missense_Mutation p.N3309I 0.49 tolerated(0.15) benign(0.127) TCGA-EE-A20C-06 2 62067598 62067598 G A FAM161A Silent p.L181L 0.45 TCGA-EE-A20C-06 2 63272521 63272521 T A EHBP1 Intron 0.41 TCGA-EE-A20C-06 2 64160887 64160887 G A VPS54 Silent p.S553S 0.44 TCGA-EE-A20C-06 2 66795807 66795807 G A MEIS1 Missense_Mutation p.G345R 0.46 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A20C-06 2 69329998 69329998 G C ANTXR1 Missense_Mutation p.G243A 0.12 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 2 71060792 71060792 A G CD207 Silent p.L184L 0.21 TCGA-EE-A20C-06 2 73456686 73456686 C T PRADC1 Missense_Mutation p.E61K 0.48 tolerated(0.34) benign(0.061) TCGA-EE-A20C-06 2 73519181 73519181 G A EGR4 Missense_Mutation p.P392S 0.38 deleterious(0.03) benign(0.032) TCGA-EE-A20C-06 2 74077595 74077595 C T STAMBP Silent p.F320F 0.42 TCGA-EE-A20C-06 2 74135896 74135896 G A ACTG2 Missense_Mutation p.E118K 0.33 deleterious_low_confidence(0.03) benign(0.163) TCGA-EE-A20C-06 2 74763571 74763571 G C LOXL3 Missense_Mutation p.H314D 0.44 tolerated(0.27) benign(0.215) TCGA-EE-A20C-06 2 74763572 74763572 G A LOXL3 Silent p.A313A 0.44 TCGA-EE-A20C-06 2 74779607 74779607 T A LOXL3 Missense_Mutation p.K52M 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 2 86389137 86389137 C T IMMT Silent p.K286K 0.45 TCGA-EE-A20C-06 2 86479172 86479172 G A REEP1 Nonsense_Mutation p.Q116* 0.48 TCGA-EE-A20C-06 2 89339851 89339851 G A IGKV1-12 Missense_Mutation p.S74F 0.33 deleterious(0) benign(0.217) TCGA-EE-A20C-06 2 89475863 89475863 C T IGKV2-24 Silent p.V103V 0.37 TCGA-EE-A20C-06 2 95488793 95488793 C T ANKRD20A8P RNA 0.26 TCGA-EE-A20C-06 2 96078440 96078440 C T FAHD2A Silent p.Y270Y 0.75 TCGA-EE-A20C-06 2 96964024 96964024 G T SNRNP200 Silent p.R373R 0.57 TCGA-EE-A20C-06 2 96964025 96964025 G A SNRNP200 Silent p.I372I 0.56 TCGA-EE-A20C-06 2 96992244 96992244 C T ITPRIPL1 5'UTR 0.54 TCGA-EE-A20C-06 2 99439518 99439518 G A KIAA1211L Silent p.I406I 0.67 TCGA-EE-A20C-06 3 102187901 102187901 G A ZPLD1 Silent p.K301K 0.73 TCGA-EE-A20C-06 3 10280672 10280672 G A IRAK2 Missense_Mutation p.E572K 0.31 tolerated(0.07) benign(0.011) TCGA-EE-A20C-06 3 107097197 107097197 C T CCDC54 Missense_Mutation p.H255Y 0.51 deleterious(0.04) benign(0.04) TCGA-EE-A20C-06 3 10980004 10980004 G A SLC6A11 Silent p.R605R 0.20 TCGA-EE-A20C-06 3 111658322 111658322 G A PHLDB2 Missense_Mutation p.D711N 0.28 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A20C-06 3 111688687 111688687 A T PHLDB2 Nonsense_Mutation p.K1156* 0.57 TCGA-EE-A20C-06 3 111887837 111887837 C T SLC9C1 Missense_Mutation p.D1042N 0.59 tolerated(0.07) possibly_damaging(0.804) TCGA-EE-A20C-06 3 11301138 11301138 C T HRH1 Missense_Mutation p.R139C 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 11301716 11301716 C T HRH1 Silent p.L331L 0.65 TCGA-EE-A20C-06 3 113286460 113286460 C T SIDT1 Missense_Mutation p.P140S 0.23 tolerated(0.41) benign(0.002) TCGA-EE-A20C-06 3 113878668 113878668 A C DRD3 Missense_Mutation p.F106C 0.65 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 3 119336889 119336889 C T PLA1A Missense_Mutation p.H260Y 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 120469688 120469688 C T GTF2E1 Missense_Mutation p.R97C 0.45 deleterious(0) benign(0.141) TCGA-EE-A20C-06 3 121305435 121305435 G A ARGFX Silent p.L312L 0.59 TCGA-EE-A20C-06 3 121980728 121980728 G A CASR Silent p.E282E 0.27 TCGA-EE-A20C-06 3 122001003 122001003 G A CASR Missense_Mutation p.R561K 0.59 deleterious(0.01) possibly_damaging(0.728) TCGA-EE-A20C-06 3 122002657 122002657 T C CASR Missense_Mutation p.F629S 0.40 tolerated(0.09) possibly_damaging(0.552) TCGA-EE-A20C-06 3 122003260 122003260 C T CASR Missense_Mutation p.S830F 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 3 122044184 122044184 A C CSTA Missense_Mutation p.E15D 0.61 tolerated(0.07) benign(0.086) TCGA-EE-A20C-06 3 122629771 122629771 C T SEMA5B Silent p.L1125L 0.61 TCGA-EE-A20C-06 3 122808015 122808015 G A PDIA5 Missense_Mutation p.V15M 0.59 tolerated(0.08) benign(0.018) TCGA-EE-A20C-06 3 123633735 123633735 G T CCDC14 Nonsense_Mutation p.S877* 0.41 TCGA-EE-A20C-06 3 123634301 123634301 G C CCDC14 Silent p.S688S 0.49 TCGA-EE-A20C-06 3 124449234 124449234 G A UMPS 5'UTR 0.39 TCGA-EE-A20C-06 3 124829174 124829174 G A SLC12A8 Silent p.S306S 0.70 TCGA-EE-A20C-06 3 126137366 126137366 C T CCDC37 Nonsense_Mutation p.Q162* 0.21 TCGA-EE-A20C-06 3 12633227 12633227 C A RAF1 Missense_Mutation p.R391S 0.66 deleterious(0) possibly_damaging(0.804) TCGA-EE-A20C-06 3 127646676 127646676 G A KBTBD12 Silent p.L380L 0.62 TCGA-EE-A20C-06 3 127682111 127682111 G A KBTBD12 Silent p.G524G 0.53 TCGA-EE-A20C-06 3 130282258 130282258 C T COL6A6 Silent p.V137V 0.29 TCGA-EE-A20C-06 3 135745761 135745761 C T PPP2R3A Missense_Mutation p.P695S 0.36 tolerated(0.07) benign(0.001) TCGA-EE-A20C-06 3 136162195 136162195 C T STAG1 Missense_Mutation p.E494K 0.21 tolerated(0.5) benign(0.011) TCGA-EE-A20C-06 3 13655622 13655622 G A FBLN2 Missense_Mutation p.E563K 0.67 tolerated(0.09) possibly_damaging(0.69) TCGA-EE-A20C-06 3 137822681 137822681 G A DZIP1L Missense_Mutation p.R45C 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 138043745 138043745 C T NME9 5'UTR 0.59 TCGA-EE-A20C-06 3 13916592 13916592 C G WNT7A Silent p.A50A 0.48 TCGA-EE-A20C-06 3 140140054 140140054 C T CLSTN2 Missense_Mutation p.P242L 0.65 deleterious(0.01) benign(0.14) TCGA-EE-A20C-06 3 140401985 140401985 C T TRIM42 Silent p.I341I 0.25 TCGA-EE-A20C-06 3 141162239 141162239 G A ZBTB38 Missense_Mutation p.V337I 0.53 tolerated(0.25) benign(0.004) TCGA-EE-A20C-06 3 141526755 141526755 G A GRK7 Missense_Mutation p.G440E 0.21 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 3 14549103 14549103 C T GRIP2 RNA 0.17 TCGA-EE-A20C-06 3 146233883 146233883 G A PLSCR1 Silent p.F302F 0.57 TCGA-EE-A20C-06 3 150264576 150264576 C T EIF2A 5'UTR 0.26 TCGA-EE-A20C-06 3 150391770 150391770 G A FAM194A Missense_Mutation p.S439L 0.21 tolerated(0.47) benign(0.341) TCGA-EE-A20C-06 3 150931471 150931471 T A P2RY14 Nonsense_Mutation p.K212* 0.61 TCGA-EE-A20C-06 3 151056274 151056274 G A P2RY12 Silent p.I120I 0.56 TCGA-EE-A20C-06 3 151155510 151155510 A G IGSF10 Missense_Mutation p.F2280S 0.33 deleterious(0) probably_damaging(0.965) TCGA-EE-A20C-06 3 154802032 154802032 C T MME Missense_Mutation p.P26S 0.51 tolerated(0.66) benign(0.001) TCGA-EE-A20C-06 3 155199056 155199056 C T PLCH1 Missense_Mutation p.E1595K 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20C-06 3 155199389 155199389 G A PLCH1 Silent p.L1484L 0.30 TCGA-EE-A20C-06 3 156009785 156009785 C T KCNAB1 Intron 0.26 TCGA-EE-A20C-06 3 15628049 15628049 G A HACL1 Missense_Mutation p.P148S 0.37 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A20C-06 3 157154617 157154617 G A PTX3 5'UTR 0.50 TCGA-EE-A20C-06 3 157816016 157816016 G A SHOX2 Missense_Mutation p.P290S 0.68 tolerated(0.11) benign(0.396) TCGA-EE-A20C-06 3 157920866 157920866 G A RSRC1 Missense_Mutation p.R109K 0.31 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A20C-06 3 159584022 159584022 G A IQCJ-SCHIP1 Missense_Mutation p.G353E 0.26 tolerated(0.07) probably_damaging(0.977) TCGA-EE-A20C-06 3 160783336 160783336 G A PPM1L Silent p.K240K 0.44 TCGA-EE-A20C-06 3 16237354 16237354 G A GALNT15 Silent p.R209R 0.31 TCGA-EE-A20C-06 3 164739019 164739019 G A SI Silent p.V1084V 0.67 TCGA-EE-A20C-06 3 167183079 167183079 C T SERPINI2 Missense_Mutation p.E261K 0.53 tolerated(0.19) benign(0.134) TCGA-EE-A20C-06 3 167189510 167189510 G A SERPINI2 Missense_Mutation p.S38F 0.14 tolerated(0.6) possibly_damaging(0.571) TCGA-EE-A20C-06 3 167196743 167196743 C T WDR49 Missense_Mutation p.E673K 0.65 deleterious(0.05) benign(0.152) TCGA-EE-A20C-06 3 167240236 167240236 G A WDR49 Missense_Mutation p.P529S 0.50 tolerated(0.16) benign(0.043) TCGA-EE-A20C-06 3 167507097 167507097 G A SERPINI1 Missense_Mutation p.E61K 0.20 tolerated(0.19) probably_damaging(0.99) TCGA-EE-A20C-06 3 168833467 168833467 C T MECOM Silent p.K608K 0.67 TCGA-EE-A20C-06 3 168838947 168838947 G A MECOM Silent p.V220V 0.61 TCGA-EE-A20C-06 3 169998140 169998140 T C PRKCI Silent p.D277D 0.60 TCGA-EE-A20C-06 3 17052916 17052916 G T PLCL2 Missense_Mutation p.W567L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 170786696 170786696 C A TNIK Missense_Mutation p.G1214C 0.69 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 170908539 170908539 C T TNIK Missense_Mutation p.R152Q 0.82 deleterious(0) unknown(0) TCGA-EE-A20C-06 3 172674602 172674602 C T SPATA16 Missense_Mutation p.E316K 0.25 deleterious(0.02) possibly_damaging(0.486) TCGA-EE-A20C-06 3 172834997 172834997 C T SPATA16 Nonsense_Mutation p.W175* 0.61 TCGA-EE-A20C-06 3 172835237 172835237 C T SPATA16 Silent p.K95K 0.58 TCGA-EE-A20C-06 3 179341721 179341721 G A NDUFB5 Missense_Mutation p.E155K 0.51 tolerated(0.22) benign(0.006) TCGA-EE-A20C-06 3 180680855 180680855 G A FXR1 Missense_Mutation p.G392E 0.31 tolerated(0.07) probably_damaging(1) TCGA-EE-A20C-06 3 183209704 183209704 C T KLHL6 3'UTR 0.24 TCGA-EE-A20C-06 3 183888309 183888309 C T DVL3 Silent p.S639S 0.78 TCGA-EE-A20C-06 3 18391078 18391078 G A SATB1 Missense_Mutation p.P658S 0.32 deleterious(0.01) benign(0.434) TCGA-EE-A20C-06 3 185245282 185245282 G A LIPH Silent p.S206S 0.31 TCGA-EE-A20C-06 3 185330417 185330417 A C SENP2 Silent p.G280G 0.25 TCGA-EE-A20C-06 3 185993452 185993452 C T DGKG Missense_Mutation p.G265D 0.24 tolerated(0.31) benign(0.14) TCGA-EE-A20C-06 3 186435437 186435437 G A KNG1 Missense_Mutation p.A36T 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 186502263 186502263 C T EIF4A2 Silent p.I24I 0.67 TCGA-EE-A20C-06 3 186943152 186943152 G A MASP1 Silent p.F567F 0.36 TCGA-EE-A20C-06 3 189713145 189713145 C T LEPREL1 Silent p.E189E 0.33 TCGA-EE-A20C-06 3 193031933 193031933 G A ATP13A5 Silent p.I736I 0.14 TCGA-EE-A20C-06 3 193039583 193039583 G A ATP13A5 Missense_Mutation p.S601F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 193156832 193156832 C T ATP13A4 Missense_Mutation p.D848N 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 3 193176919 193176919 G A ATP13A4 Missense_Mutation p.T542I 0.56 tolerated(0.07) possibly_damaging(0.511) TCGA-EE-A20C-06 3 194118752 194118752 G A GP5 Missense_Mutation p.S87F 0.32 deleterious(0.01) benign(0.064) TCGA-EE-A20C-06 3 195022365 195022365 C T ACAP2 Missense_Mutation p.G445E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 3 195028038 195028038 C T ACAP2 Silent p.V308V 0.65 TCGA-EE-A20C-06 3 195453125 195453125 C T MUC20 Missense_Mutation p.P551S 0.58 tolerated(0.72) unknown(0) TCGA-EE-A20C-06 3 195791241 195791241 G A TFRC Silent p.S419S 0.24 TCGA-EE-A20C-06 3 195791242 195791242 G A TFRC Missense_Mutation p.S419F 0.25 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 3 195938239 195938239 C T ZDHHC19 5'UTR 0.46 TCGA-EE-A20C-06 3 196022888 196022888 C T TCTEX1D2 Missense_Mutation p.V124I 0.52 tolerated(0.19) benign(0.042) TCGA-EE-A20C-06 3 196386645 196386645 G A NRROS Missense_Mutation p.R44Q 0.53 tolerated(0.56) benign(0.005) TCGA-EE-A20C-06 3 196678714 196678714 G A PIGZ Silent p.F63F 0.59 TCGA-EE-A20C-06 3 23574145 23574145 C T UBE2E2 Missense_Mutation p.S154F 0.68 deleterious(0) possibly_damaging(0.631) TCGA-EE-A20C-06 3 27450882 27450882 C T SLC4A7 Missense_Mutation p.G627R 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A20C-06 3 2787246 2787246 T A CNTN4 Missense_Mutation p.F75I 0.65 tolerated(0.24) benign(0.071) TCGA-EE-A20C-06 3 2942482 2942482 A T CNTN4 Missense_Mutation p.N352Y 0.59 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 3 32491028 32491028 G T CMTM7 Missense_Mutation p.G139V 0.29 deleterious(0.01) possibly_damaging(0.853) TCGA-EE-A20C-06 3 32932694 32932694 G A TRIM71 Silent p.R666R 0.65 TCGA-EE-A20C-06 3 36779082 36779082 C T DCLK3 Missense_Mutation p.E357K 0.69 tolerated(0.36) benign(0.08) TCGA-EE-A20C-06 3 36779344 36779344 C T DCLK3 Silent p.R269R 0.28 TCGA-EE-A20C-06 3 36884118 36884118 A T TRANK1 Missense_Mutation p.W1715R 0.27 deleterious(0) probably_damaging(0.921) TCGA-EE-A20C-06 3 36897155 36897155 A T TRANK1 Missense_Mutation p.F1309Y 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A20C-06 3 36898526 36898526 C T TRANK1 Missense_Mutation p.G852E 0.50 deleterious(0) probably_damaging(0.928) TCGA-EE-A20C-06 3 369956 369956 C T CHL1 Missense_Mutation p.H102Y 0.50 deleterious(0.02) benign(0.377) TCGA-EE-A20C-06 3 37367218 37367218 T C GOLGA4 Silent p.L1303L 0.33 TCGA-EE-A20C-06 3 37514923 37514923 G A ITGA9 Missense_Mutation p.R131Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 3 38350536 38350536 C T SLC22A14 Silent p.I289I 0.56 TCGA-EE-A20C-06 3 38622668 38622668 G A SCN5A Silent p.A994A 0.59 TCGA-EE-A20C-06 3 38793895 38793895 C T SCN10A Missense_Mutation p.G524R 0.67 tolerated(0.09) benign(0.072) TCGA-EE-A20C-06 3 38798189 38798189 G A SCN10A Silent p.L422L 0.65 TCGA-EE-A20C-06 3 3886559 3886559 C T LRRN1 Silent p.L78L 0.34 TCGA-EE-A20C-06 3 39156156 39156156 C T TTC21A Silent p.F213F 0.22 TCGA-EE-A20C-06 3 39225636 39225636 G C XIRP1 Silent p.T1767T 0.23 TCGA-EE-A20C-06 3 42573302 42573302 G A VIPR1 Missense_Mutation p.D287N 0.17 deleterious(0.03) benign(0.35) TCGA-EE-A20C-06 3 42594865 42594865 T C SEC22C Missense_Mutation p.N263D 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 3 45127229 45127229 T C CDCP1 Silent p.E804E 0.51 TCGA-EE-A20C-06 3 45936438 45936438 G A CCR9 Missense_Mutation p.D5N 0.31 deleterious(0.04) benign(0.063) TCGA-EE-A20C-06 3 46245057 46245057 G A CCR1 Missense_Mutation p.L250F 0.34 tolerated(0.09) possibly_damaging(0.452) TCGA-EE-A20C-06 3 47125362 47125362 G A SETD2 Silent p.L1970L 0.22 TCGA-EE-A20C-06 3 47371613 47371613 G A KLHL18 Missense_Mutation p.E192K 0.50 deleterious(0.01) possibly_damaging(0.582) TCGA-EE-A20C-06 3 47453312 47453312 C T PTPN23 Missense_Mutation p.P1310S 0.66 benign(0.345) TCGA-EE-A20C-06 3 47453313 47453313 C T PTPN23 Missense_Mutation p.P1310L 0.67 possibly_damaging(0.896) TCGA-EE-A20C-06 3 47610700 47610700 G A CSPG5 Missense_Mutation p.S467F 0.26 deleterious(0.03) probably_damaging(0.962) TCGA-EE-A20C-06 3 47896767 47896767 C T MAP4 Missense_Mutation p.G1078S 0.48 tolerated(0.09) probably_damaging(0.979) TCGA-EE-A20C-06 3 48336567 48336567 G A NME6 Missense_Mutation p.S139L 0.32 deleterious(0) probably_damaging(0.96) TCGA-EE-A20C-06 3 48506283 48506283 G A ATRIP Silent p.R703R 0.57 TCGA-EE-A20C-06 3 48669322 48669322 G A SLC26A6 Silent p.S247S 0.27 TCGA-EE-A20C-06 3 48896047 48896047 G A SLC25A20 Missense_Mutation p.P246S 0.13 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A20C-06 3 48896532 48896532 G A SLC25A20 Silent p.F237F 0.25 TCGA-EE-A20C-06 3 49005998 49005998 C T ARIH2 Silent p.L190L 0.57 TCGA-EE-A20C-06 3 49051112 49051112 G A WDR6 Silent p.L745L 0.19 TCGA-EE-A20C-06 3 49149411 49149411 G A USP19 Silent p.L944L 0.53 TCGA-EE-A20C-06 3 49168499 49168499 G A LAMB2 Nonsense_Mutation p.R267* 0.56 TCGA-EE-A20C-06 3 49168500 49168500 G A LAMB2 Silent p.I266I 0.54 TCGA-EE-A20C-06 3 49294323 49294323 C A CCDC36 Missense_Mutation p.P465T 0.60 tolerated(0.09) benign(0.316) TCGA-EE-A20C-06 3 49294324 49294324 C T CCDC36 Missense_Mutation p.P465L 0.59 tolerated(0.19) benign(0.081) TCGA-EE-A20C-06 3 49698344 49698344 C T BSN Silent p.L3022L 0.54 TCGA-EE-A20C-06 3 49743008 49743008 C T RNF123 Missense_Mutation p.P734S 0.14 tolerated(0.54) possibly_damaging(0.889) TCGA-EE-A20C-06 3 49743009 49743009 C T RNF123 Missense_Mutation p.P734L 0.19 tolerated(0.25) possibly_damaging(0.796) TCGA-EE-A20C-06 3 49878430 49878430 G A TRAIP Silent p.S231S 0.29 TCGA-EE-A20C-06 3 49878431 49878431 G A TRAIP Missense_Mutation p.S231F 0.29 deleterious(0.04) benign(0.031) TCGA-EE-A20C-06 3 50147109 50147109 A C RBM5 Silent p.P422P 0.19 TCGA-EE-A20C-06 3 50147110 50147110 C T RBM5 Missense_Mutation p.P423S 0.18 tolerated(0.18) benign(0.058) TCGA-EE-A20C-06 3 50225292 50225292 C T SEMA3F Missense_Mutation p.A701V 0.27 tolerated(0.29) benign(0.04) TCGA-EE-A20C-06 3 50256069 50256069 C T SLC38A3 RNA 0.24 TCGA-EE-A20C-06 3 50326071 50326071 G A IFRD2 Silent p.H429H 0.35 TCGA-EE-A20C-06 3 50339964 50339964 C T HYAL1 Missense_Mutation p.D142N 0.20 tolerated(0.2) possibly_damaging(0.81) TCGA-EE-A20C-06 3 50598400 50598400 C T C3orf18 Missense_Mutation p.R119Q 0.31 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A20C-06 3 51297656 51297656 G A DOCK3 Missense_Mutation p.E752K 0.42 tolerated(0.27) possibly_damaging(0.64) TCGA-EE-A20C-06 3 51378771 51378771 G A DOCK3 Silent p.K1290K 0.48 TCGA-EE-A20C-06 3 52734291 52734291 C T GLT8D1 Silent p.R34R 0.27 TCGA-EE-A20C-06 3 53845206 53845206 G A CACNA1D Missense_Mutation p.E2107K 0.65 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-EE-A20C-06 3 54930714 54930714 C T CACNA2D3 Intron 0.31 TCGA-EE-A20C-06 3 54958972 54958972 G A LRTM1 Missense_Mutation p.A93V 0.65 tolerated(0.17) benign(0.269) TCGA-EE-A20C-06 3 56468424 56468424 C T ERC2 Missense_Mutation p.M204I 0.33 tolerated(1) benign(0.003) TCGA-EE-A20C-06 3 57493467 57493467 A G DNAH12 Missense_Mutation p.V267A 0.30 deleterious(0) possibly_damaging(0.877) TCGA-EE-A20C-06 3 57496597 57496597 C T DNAH12 Missense_Mutation p.G130E 0.61 deleterious(0) possibly_damaging(0.771) TCGA-EE-A20C-06 3 58156328 58156328 C T FLNB Missense_Mutation p.H2581Y 0.26 tolerated(0.47) benign(0.02) TCGA-EE-A20C-06 3 58870414 58870414 G A C3orf67 Missense_Mutation p.S66L 0.33 tolerated(0.49) benign(0.012) TCGA-EE-A20C-06 3 65607716 65607716 G A MAGI1 Nonsense_Mutation p.Q121* 0.29 TCGA-EE-A20C-06 3 68782269 68782269 G A FAM19A4 3'UTR 0.58 TCGA-EE-A20C-06 3 69245538 69245538 G A FRMD4B Missense_Mutation p.P368S 0.66 tolerated(0.53) benign(0.005) TCGA-EE-A20C-06 3 74419075 74419075 A T CNTN3 Silent p.G242G 0.53 TCGA-EE-A20C-06 3 78656094 78656094 G A ROBO1 Silent p.L1511L 0.68 TCGA-EE-A20C-06 3 85935354 85935354 C T CADM2 Missense_Mutation p.P129S 0.14 deleterious(0) probably_damaging(0.969) TCGA-EE-A20C-06 3 87313585 87313585 G A POU1F1 Silent p.L124L 0.24 TCGA-EE-A20C-06 3 8794730 8794730 G A OXTR Missense_Mutation p.S368L 0.36 deleterious(0.02) unknown(0) TCGA-EE-A20C-06 3 8794894 8794894 G A OXTR Silent p.I313I 0.38 TCGA-EE-A20C-06 3 8977647 8977647 G A RAD18 Missense_Mutation p.S266F 0.61 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 3 93733940 93733940 C T STX19 Silent p.Q58Q 0.37 TCGA-EE-A20C-06 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 3 96706696 96706696 G A EPHA6 Missense_Mutation p.E325K 0.60 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A20C-06 3 97868276 97868276 G A OR5H14 Missense_Mutation p.G16E 0.22 deleterious(0.01) probably_damaging(0.958) TCGA-EE-A20C-06 3 97983484 97983484 C T OR5H6 Missense_Mutation p.S119F 0.52 tolerated(1) benign(0.003) TCGA-EE-A20C-06 3 98216788 98216788 G A OR5K2 Silent p.E88E 0.25 TCGA-EE-A20C-06 3 9974701 9974701 G A IL17RC Silent p.L600L 0.35 TCGA-EE-A20C-06 4 100201357 100201357 G T ADH1A Nonsense_Mutation p.S303* 0.59 TCGA-EE-A20C-06 4 100260829 100260829 A G ADH1C Silent p.F336F 0.68 TCGA-EE-A20C-06 4 100503179 100503179 C T MTTP Missense_Mutation p.S60F 0.63 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 4 100534068 100534068 A C MTTP Splice_Site p.X664_splice 0.45 TCGA-EE-A20C-06 4 102776332 102776332 G A BANK1 Missense_Mutation p.E204K 0.38 tolerated(0.14) probably_damaging(0.994) TCGA-EE-A20C-06 4 104079788 104079788 G A CENPE Missense_Mutation p.H953Y 0.43 benign(0.087) TCGA-EE-A20C-06 4 106156519 106156519 C T TET2 Missense_Mutation p.P474S 0.14 tolerated(0.35) benign(0.005) TCGA-EE-A20C-06 4 106156520 106156520 C T TET2 Missense_Mutation p.P474L 0.15 tolerated(1) benign(0) TCGA-EE-A20C-06 4 107845080 107845080 G C DKK2 3'UTR 0.31 TCGA-EE-A20C-06 4 109783699 109783699 C T COL25A1 Silent p.G385G 0.34 TCGA-EE-A20C-06 4 110415979 110415979 C T SEC24B Silent p.N485N 0.41 TCGA-EE-A20C-06 4 113359765 113359765 C T ALPK1 Missense_Mutation p.P1105L 0.61 deleterious(0) benign(0.371) TCGA-EE-A20C-06 4 113539079 113539079 C T C4orf21 Missense_Mutation p.E707K 0.42 tolerated(0.17) benign(0.298) TCGA-EE-A20C-06 4 11401111 11401111 G T HS3ST1 Silent p.S173S 0.39 TCGA-EE-A20C-06 4 114279819 114279819 C T ANK2 Missense_Mutation p.P3349S 0.40 probably_damaging(1) TCGA-EE-A20C-06 4 114426160 114426160 G A CAMK2D Intron 0.60 TCGA-EE-A20C-06 4 114824393 114824393 G A ARSJ Silent p.F279F 0.34 TCGA-EE-A20C-06 4 118975689 118975689 C G NDST3 Silent p.S208S 0.17 TCGA-EE-A20C-06 4 121957991 121957991 G A NDNF Missense_Mutation p.H379Y 0.16 tolerated(0.11) benign(0.038) TCGA-EE-A20C-06 4 122760821 122760821 G A BBS7 Missense_Mutation p.R446W 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 4 122833183 122833183 G A TRPC3 Silent p.F469F 0.24 TCGA-EE-A20C-06 4 122854176 122854176 G A TRPC3 Silent p.S79S 0.33 TCGA-EE-A20C-06 4 123202788 123202788 C A KIAA1109 Missense_Mutation p.Q2966K 0.61 benign(0.075) TCGA-EE-A20C-06 4 123274173 123274173 C T KIAA1109 Missense_Mutation p.S4655L 0.52 probably_damaging(0.988) TCGA-EE-A20C-06 4 126239487 126239487 T C FAT4 Silent p.L641L 0.56 TCGA-EE-A20C-06 4 126241866 126241866 C T FAT4 Missense_Mutation p.P1434S 0.56 probably_damaging(0.962) TCGA-EE-A20C-06 4 126373533 126373533 G A FAT4 Missense_Mutation p.E3788K 0.38 benign(0.223) TCGA-EE-A20C-06 4 126389873 126389873 A T FAT4 Nonsense_Mutation p.R4036* 0.34 TCGA-EE-A20C-06 4 126412032 126412032 C T FAT4 Silent p.S4685S 0.32 TCGA-EE-A20C-06 4 128744729 128744729 G A HSPA4L Missense_Mutation p.G666R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 4 128744730 128744730 G A HSPA4L Missense_Mutation p.G666E 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 4 129764143 129764143 C T JADE1 Nonsense_Mutation p.Q30* 0.32 TCGA-EE-A20C-06 4 130030856 130030856 C T C4orf33 Intron 0.73 TCGA-EE-A20C-06 4 138451832 138451832 C T PCDH18 Missense_Mutation p.E471K 0.46 tolerated(0.25) probably_damaging(1) TCGA-EE-A20C-06 4 141311802 141311802 T G CLGN Missense_Mutation p.K578Q 0.22 tolerated(0.17) benign(0.161) TCGA-EE-A20C-06 4 141600827 141600827 A G TBC1D9 Silent p.G177G 0.47 TCGA-EE-A20C-06 4 144135130 144135130 C T USP38 Silent p.F667F 0.64 TCGA-EE-A20C-06 4 145658962 145658962 G A HHIP Silent p.P652P 0.13 TCGA-EE-A20C-06 4 146042539 146042539 C T ABCE1 Missense_Mutation p.S420L 0.50 tolerated(0.08) benign(0.089) TCGA-EE-A20C-06 4 146071734 146071734 G C OTUD4 Nonsense_Mutation p.S332* 0.15 TCGA-EE-A20C-06 4 146601511 146601511 C T C4orf51 Silent p.Y52Y 0.42 TCGA-EE-A20C-06 4 146824219 146824219 G A ZNF827 Silent p.S64S 0.58 TCGA-EE-A20C-06 4 146824297 146824297 C T ZNF827 Silent p.E38E 0.11 TCGA-EE-A20C-06 4 151114356 151114356 C T DCLK2 Missense_Mutation p.R275C 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 4 153864526 153864526 C T FHDC1 Missense_Mutation p.P106L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 4 15443838 15443838 G A C1QTNF7 Silent p.G102G 0.49 TCGA-EE-A20C-06 4 154702739 154702739 T C SFRP2 Missense_Mutation p.N251S 0.28 tolerated(0.1) possibly_damaging(0.474) TCGA-EE-A20C-06 4 155225956 155225956 C T DCHS2 Missense_Mutation p.D1369N 0.66 deleterious(0) probably_damaging(0.99) TCGA-EE-A20C-06 4 155528082 155528082 G A FGG Silent p.L302L 0.11 TCGA-EE-A20C-06 4 156726317 156726317 C T GUCY1B3 Missense_Mutation p.S591F 0.58 deleterious(0.05) benign(0.382) TCGA-EE-A20C-06 4 158281038 158281052 TTTCCTGCAGAGATC - GRIA2 Splice_Site p.X682_splice 0.47 TCGA-EE-A20C-06 4 159158716 159158716 A C TMEM144 Silent p.G201G 0.28 TCGA-EE-A20C-06 4 159592866 159592866 A C C4orf46 Missense_Mutation p.S30A 0.69 tolerated_low_confidence(0.34) benign(0.02) TCGA-EE-A20C-06 4 164246485 164246485 G A NPY1R Silent p.I375I 0.44 TCGA-EE-A20C-06 4 164272759 164272759 T A NPY5R Missense_Mutation p.M445K 0.46 deleterious_low_confidence(0.01) benign(0.038) TCGA-EE-A20C-06 4 164393517 164393517 G A TKTL2 Missense_Mutation p.S457L 0.67 deleterious(0.02) benign(0.323) TCGA-EE-A20C-06 4 164394935 164394935 A C TKTL2 5'UTR 0.30 TCGA-EE-A20C-06 4 166405693 166405693 G A CPE Missense_Mutation p.D304N 0.28 tolerated(0.67) probably_damaging(0.999) TCGA-EE-A20C-06 4 166964467 166964467 C T TLL1 Nonsense_Mutation p.Q474* 0.47 TCGA-EE-A20C-06 4 167020678 167020678 G A TLL1 Missense_Mutation p.G969E 0.38 tolerated(0.21) probably_damaging(0.969) TCGA-EE-A20C-06 4 167021969 167021969 G A TLL1 Missense_Mutation p.G995R 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 4 167656020 167656020 C T SPOCK3 3'UTR 0.17 TCGA-EE-A20C-06 4 169049259 169049259 C T ANXA10 Missense_Mutation p.P15S 0.64 tolerated(0.29) probably_damaging(0.998) TCGA-EE-A20C-06 4 169183227 169183227 T A DDX60 Missense_Mutation p.K1066M 0.17 deleterious(0) possibly_damaging(0.652) TCGA-EE-A20C-06 4 169589390 169589390 C T PALLD Missense_Mutation p.H320Y 0.26 tolerated(0.84) benign(0.102) TCGA-EE-A20C-06 4 170912480 170912480 A G MFAP3L 3'UTR 0.18 TCGA-EE-A20C-06 4 174254256 174254256 C T HMGB2 Missense_Mutation p.G87E 0.24 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A20C-06 4 175897038 175897038 G A ADAM29 Missense_Mutation p.G121E 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20C-06 4 175897250 175897250 G A ADAM29 Missense_Mutation p.G192S 0.76 tolerated(0.09) benign(0.04) TCGA-EE-A20C-06 4 176733247 176733247 G A GPM6A Intron 0.15 TCGA-EE-A20C-06 4 183601734 183601734 T G TENM3 Missense_Mutation p.S560A 0.16 tolerated(0.73) benign(0.277) TCGA-EE-A20C-06 4 183696110 183696110 C T TENM3 Missense_Mutation p.S1703F 0.38 deleterious(0) possibly_damaging(0.831) TCGA-EE-A20C-06 4 186180011 186180011 A T SNX25 Missense_Mutation p.Y11F 0.23 tolerated(0.2) benign(0.038) TCGA-EE-A20C-06 4 186545351 186545351 G A SORBS2 Missense_Mutation p.S507F 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A20C-06 4 187172668 187172668 G A KLKB1 Missense_Mutation p.G299E 0.30 tolerated(0.24) benign(0.088) TCGA-EE-A20C-06 4 187179212 187179212 G A KLKB1 Missense_Mutation p.G588E 0.56 tolerated(1) benign(0.132) TCGA-EE-A20C-06 4 187455635 187455635 C T MTNR1A Silent p.S87S 0.39 TCGA-EE-A20C-06 4 187521124 187521124 G A FAT1 Silent p.L4011L 0.60 TCGA-EE-A20C-06 4 188924206 188924206 C T ZFP42 Missense_Mutation p.S82F 0.27 deleterious(0) possibly_damaging(0.879) TCGA-EE-A20C-06 4 189022263 189022263 G A TRIML2 Nonsense_Mutation p.Q93* 0.49 TCGA-EE-A20C-06 4 20525790 20525790 C T SLIT2 Silent p.F476F 0.39 TCGA-EE-A20C-06 4 20597400 20597400 G A SLIT2 Missense_Mutation p.G1088E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 4 22749269 22749269 C T GBA3 Nonsense_Mutation p.R213* 0.23 TCGA-EE-A20C-06 4 24836586 24836586 G A CCDC149 Silent p.V268V 0.61 TCGA-EE-A20C-06 4 25780778 25780778 C T SEL1L3 Missense_Mutation p.M835I 0.25 tolerated(1) benign(0) TCGA-EE-A20C-06 4 26483656 26483656 C T CCKAR Silent p.R297R 0.68 TCGA-EE-A20C-06 4 30921781 30921781 C T PCDH7 Missense_Mutation p.R1061C 0.57 deleterious(0) possibly_damaging(0.899) TCGA-EE-A20C-06 4 3230640 3230640 T - HTT Frame_Shift_Del p.S2672Rfs*25 0.21 TCGA-EE-A20C-06 4 3443791 3443791 C T HGFAC Silent p.L21L 0.64 TCGA-EE-A20C-06 4 3495006 3495006 C T DOK7 Silent p.A431A 0.53 TCGA-EE-A20C-06 4 36216095 36216095 G A ARAP2 Missense_Mutation p.R305C 0.50 tolerated(0.06) possibly_damaging(0.708) TCGA-EE-A20C-06 4 36230271 36230271 G A ARAP2 Nonsense_Mutation p.R280* 0.41 TCGA-EE-A20C-06 4 38016501 38016501 C T TBC1D1 Silent p.S263S 0.23 TCGA-EE-A20C-06 4 38051474 38051474 T C TBC1D1 Missense_Mutation p.L622P 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 4 40351246 40351246 C T CHRNA9 Missense_Mutation p.S238L 0.63 tolerated(0.23) benign(0.107) TCGA-EE-A20C-06 4 40778090 40778090 C A NSUN7 Missense_Mutation p.H284N 0.32 tolerated(0.1) benign(0.41) TCGA-EE-A20C-06 4 41951391 41951391 C T TMEM33 Silent p.N201N 0.26 TCGA-EE-A20C-06 4 4214696 4214696 G A OTOP1 Silent p.L147L 0.30 TCGA-EE-A20C-06 4 44688634 44688634 C T GUF1 Missense_Mutation p.S281F 0.21 deleterious(0) possibly_damaging(0.663) TCGA-EE-A20C-06 4 46060577 46060577 G A GABRG1 Missense_Mutation p.P230S 0.46 tolerated(0.23) possibly_damaging(0.735) TCGA-EE-A20C-06 4 47427953 47427953 C T GABRB1 Missense_Mutation p.S448F 0.25 tolerated(0.6) benign(0.013) TCGA-EE-A20C-06 4 49034726 49034726 A G CWH43 Missense_Mutation p.N551S 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A20C-06 4 54231585 54231585 G A SCFD2 Missense_Mutation p.S175F 0.64 deleterious(0.01) possibly_damaging(0.613) TCGA-EE-A20C-06 4 54440097 54440097 C T LNX1 Missense_Mutation p.E25K 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 4 55955950 55955950 C T KDR Nonsense_Mutation p.W1071* 0.32 TCGA-EE-A20C-06 4 57164382 57164382 C T KIAA1211 Intron 0.42 TCGA-EE-A20C-06 4 59386 59386 C T ZNF595 Missense_Mutation p.P23S 0.13 tolerated_low_confidence(0.36) benign(0.023) TCGA-EE-A20C-06 4 65175603 65175603 C T TECRL Missense_Mutation p.E200K 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 4 6596336 6596336 C T MAN2B2 Missense_Mutation p.H312Y 0.62 tolerated(0.18) benign(0.098) TCGA-EE-A20C-06 4 68447023 68447023 C T STAP1 Silent p.L122L 0.53 TCGA-EE-A20C-06 4 69100292 69100292 G A TMPRSS11B Missense_Mutation p.P120S 0.75 tolerated(0.44) benign(0.017) TCGA-EE-A20C-06 4 69693116 69693116 G A UGT2B10 Missense_Mutation p.G386E 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 4 69693117 69693117 G A UGT2B10 Silent p.G386G 0.17 TCGA-EE-A20C-06 4 70146238 70146238 C T UGT2B28 Missense_Mutation p.S7L 0.50 tolerated(0.06) benign(0.371) TCGA-EE-A20C-06 4 70359495 70359495 C T UGT2B4 Nonsense_Mutation p.W262* 0.62 TCGA-EE-A20C-06 4 70359505 70359505 C T UGT2B4 Missense_Mutation p.R259Q 0.36 deleterious(0.03) possibly_damaging(0.474) TCGA-EE-A20C-06 4 70359506 70359506 G A UGT2B4 Nonsense_Mutation p.R259* 0.18 TCGA-EE-A20C-06 4 70512682 70512682 C T UGT2A1 Nonsense_Mutation p.W227* 0.50 TCGA-EE-A20C-06 4 71255649 71255649 C T SMR3B 3'UTR 0.56 TCGA-EE-A20C-06 4 71339741 71339741 G A MUC7 Translation_Start_Site p.M1? 0.55 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-EE-A20C-06 4 71397009 71397009 C T AMTN Missense_Mutation p.S204L 0.27 tolerated(0.09) benign(0.006) TCGA-EE-A20C-06 4 71500252 71500252 A G ENAM Silent p.Q146Q 0.30 TCGA-EE-A20C-06 4 72338550 72338550 C T SLC4A4 Missense_Mutation p.S589F 0.40 deleterious(0) probably_damaging(0.954) TCGA-EE-A20C-06 4 73003785 73003785 G A NPFFR2 Silent p.K221K 0.41 TCGA-EE-A20C-06 4 73012965 73012965 C T NPFFR2 Silent p.S335S 0.62 TCGA-EE-A20C-06 4 74008371 74008371 T A ANKRD17 Missense_Mutation p.T691S 0.45 probably_damaging(0.966) TCGA-EE-A20C-06 4 74276044 74276044 G A ALB Missense_Mutation p.D211N 0.30 deleterious(0) benign(0.036) TCGA-EE-A20C-06 4 7435841 7435841 C T PSAPL1 Missense_Mutation p.E256K 0.32 tolerated(0.14) benign(0.037) TCGA-EE-A20C-06 4 74368812 74368812 G A AFM 3'UTR 0.64 TCGA-EE-A20C-06 4 74719088 74719088 C A PF4V1 Silent p.S3S 0.59 TCGA-EE-A20C-06 4 74852948 74852948 C T PPBP 3'UTR 0.38 TCGA-EE-A20C-06 4 75250454 75250454 C T EREG Nonsense_Mutation p.R147* 0.69 TCGA-EE-A20C-06 4 77247026 77247026 T A CCDC158 Silent p.S1047S 0.31 TCGA-EE-A20C-06 4 79362352 79362352 C T FRAS1 Missense_Mutation p.H1856Y 0.59 benign(0.046) TCGA-EE-A20C-06 4 79403689 79403689 G A FRAS1 Missense_Mutation p.V2918M 0.61 probably_damaging(0.947) TCGA-EE-A20C-06 4 79847852 79847852 C T PAQR3 Silent p.L175L 0.35 TCGA-EE-A20C-06 4 82125881 82125881 C T PRKG2 Silent p.R107R 0.27 TCGA-EE-A20C-06 4 83770029 83770029 G A SEC31A Silent p.P810P 0.69 TCGA-EE-A20C-06 4 87622698 87622698 C T PTPN13 Silent p.F313F 0.37 TCGA-EE-A20C-06 4 87693939 87693939 C T PTPN13 Missense_Mutation p.S1731F 0.59 deleterious(0.01) benign(0.012) TCGA-EE-A20C-06 4 88533290 88533290 G A DSPP Missense_Mutation p.E29K 0.77 possibly_damaging(0.65) TCGA-EE-A20C-06 4 90171369 90171369 C T GPRIN3 5'UTR 0.67 TCGA-EE-A20C-06 4 91229611 91229611 G A CCSER1 Missense_Mutation p.R59Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 4 91229612 91229612 G C CCSER1 Silent p.R59R 0.21 TCGA-EE-A20C-06 4 94137945 94137945 G A GRID2 Silent p.T282T 0.25 TCGA-EE-A20C-06 4 96104135 96104135 C T UNC5C Silent p.L788L 0.52 TCGA-EE-A20C-06 4 9836517 9836517 G A SLC2A9 Silent p.F469F 0.17 TCGA-EE-A20C-06 4 99997979 99997979 G A ADH5 Missense_Mutation p.S147F 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 109159519 109159519 C T MAN2A1 Silent p.V849V 0.42 TCGA-EE-A20C-06 5 11364854 11364854 C T CTNND2 Silent p.G442G 0.45 TCGA-EE-A20C-06 5 115782976 115782976 G A SEMA6A Missense_Mutation p.P809L 0.40 tolerated(0.34) probably_damaging(0.999) TCGA-EE-A20C-06 5 115782977 115782977 G A SEMA6A Missense_Mutation p.P809S 0.44 tolerated(0.35) probably_damaging(0.999) TCGA-EE-A20C-06 5 1214126 1214126 C T SLC6A19 Missense_Mutation p.S278F 0.50 deleterious(0) probably_damaging(0.987) TCGA-EE-A20C-06 5 121786716 121786716 C T SNCAIP Missense_Mutation p.T725I 0.40 deleterious(0) possibly_damaging(0.501) TCGA-EE-A20C-06 5 122923830 122923830 C T CSNK1G3 Missense_Mutation p.P248S 0.33 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 5 127674734 127674734 A T FBN2 Silent p.I1121I 0.45 TCGA-EE-A20C-06 5 127872112 127872112 C T FBN2 Missense_Mutation p.G107E 0.30 deleterious(0.01) unknown(0) TCGA-EE-A20C-06 5 128958033 128958033 G A ADAMTS19 Missense_Mutation p.E582K 0.38 tolerated(0.14) benign(0.024) TCGA-EE-A20C-06 5 134223701 134223701 C T TXNDC15 Silent p.F140F 0.33 TCGA-EE-A20C-06 5 135587470 135587470 G A TRPC7 Silent p.F482F 0.36 TCGA-EE-A20C-06 5 13716770 13716770 C T DNAH5 Missense_Mutation p.M4245I 0.39 benign(0.072) TCGA-EE-A20C-06 5 137221830 137221830 C T MYOT Missense_Mutation p.S373L 0.53 tolerated(0.12) probably_damaging(0.984) TCGA-EE-A20C-06 5 13729620 13729620 C T DNAH5 Nonsense_Mutation p.W3937* 0.46 TCGA-EE-A20C-06 5 137426953 137426953 G A WNT8A 3'UTR 0.64 TCGA-EE-A20C-06 5 137593381 137593381 C T GFRA3 Silent p.V244V 0.48 TCGA-EE-A20C-06 5 137621721 137621721 G A CDC25C Missense_Mutation p.P421L 0.44 tolerated(0.36) benign(0.06) TCGA-EE-A20C-06 5 137621722 137621722 G A CDC25C Missense_Mutation p.P421S 0.44 tolerated(0.15) possibly_damaging(0.463) TCGA-EE-A20C-06 5 13807748 13807748 C T DNAH5 Missense_Mutation p.M2613I 0.40 benign(0.001) TCGA-EE-A20C-06 5 13841965 13841965 C T DNAH5 Missense_Mutation p.E1774K 0.50 possibly_damaging(0.621) TCGA-EE-A20C-06 5 13867897 13867897 G A DNAH5 Silent p.L1347L 0.43 TCGA-EE-A20C-06 5 138714357 138714357 C T SLC23A1 Missense_Mutation p.G368S 0.44 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A20C-06 5 138723370 138723370 C T MZB1 3'UTR 0.69 TCGA-EE-A20C-06 5 138861082 138861082 G A TMEM173 Silent p.L70L 0.34 TCGA-EE-A20C-06 5 140182658 140182658 C T PCDHA3 Silent p.L626L 0.45 TCGA-EE-A20C-06 5 140208139 140208139 G A PCDHA6 Missense_Mutation p.E155K 0.52 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A20C-06 5 140236607 140236607 G A PCDHA10 Missense_Mutation p.G325E 0.98 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A20C-06 5 140248958 140248958 C T PCDHA11 Silent p.I90I 0.22 TCGA-EE-A20C-06 5 140255189 140255189 C T PCDHA12 Silent p.F44F 0.45 TCGA-EE-A20C-06 5 140255968 140255968 T A PCDHA12 Missense_Mutation p.I304N 0.48 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-EE-A20C-06 5 140264221 140264221 G A PCDHA13 Missense_Mutation p.E790K 0.50 tolerated_low_confidence(0.34) benign(0.014) TCGA-EE-A20C-06 5 140432972 140432972 G A PCDHB1 Silent p.Q639Q 0.44 TCGA-EE-A20C-06 5 140482661 140482661 A T PCDHB3 3'UTR 0.58 TCGA-EE-A20C-06 5 140501838 140501838 G A PCDHB4 Silent p.R86R 0.45 TCGA-EE-A20C-06 5 140531512 140531512 C T PCDHB6 Silent p.F558F 0.41 TCGA-EE-A20C-06 5 140579977 140579977 C T PCDHB11 Silent p.F210F 0.53 TCGA-EE-A20C-06 5 140580900 140580900 C T PCDHB11 Missense_Mutation p.S518L 0.47 deleterious_low_confidence(0) benign(0.089) TCGA-EE-A20C-06 5 140589843 140589843 C T PCDHB12 Missense_Mutation p.S455F 0.43 deleterious_low_confidence(0.01) benign(0.064) TCGA-EE-A20C-06 5 140594580 140594580 C T PCDHB13 Silent p.I295I 0.52 TCGA-EE-A20C-06 5 140604854 140604854 G A PCDHB14 Missense_Mutation p.D593N 0.56 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A20C-06 5 140625979 140625979 C T PCDHB15 Missense_Mutation p.S278L 0.56 tolerated_low_confidence(0.08) benign(0.025) TCGA-EE-A20C-06 5 140683461 140683461 G A SLC25A2 5'UTR 0.47 TCGA-EE-A20C-06 5 140764012 140764012 G A PCDHGA7 Missense_Mutation p.A516T 0.25 deleterious_low_confidence(0) possibly_damaging(0.668) TCGA-EE-A20C-06 5 140784598 140784598 C T PCDHGA9 Silent p.L693L 0.42 TCGA-EE-A20C-06 5 140865916 140865916 C T PCDHGC4 Silent p.H392H 0.41 TCGA-EE-A20C-06 5 141244782 141244782 G A PCDH1 Nonsense_Mutation p.Q372* 0.44 TCGA-EE-A20C-06 5 141244783 141244783 G T PCDH1 Silent p.A371A 0.43 TCGA-EE-A20C-06 5 141367340 141367340 T A RNF14 Missense_Mutation p.D470E 0.36 tolerated_low_confidence(0.21) unknown(0) TCGA-EE-A20C-06 5 14369569 14369569 T A TRIO Silent p.S1051S 0.36 TCGA-EE-A20C-06 5 14369626 14369626 C T TRIO Silent p.F1070F 0.45 TCGA-EE-A20C-06 5 145176046 145176046 C T PRELID2 Missense_Mutation p.E157K 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 145393495 145393495 G A SH3RF2 Silent p.R310R 0.42 TCGA-EE-A20C-06 5 145428695 145428695 G A SH3RF2 Silent p.K403K 0.42 TCGA-EE-A20C-06 5 145428696 145428696 G A SH3RF2 Missense_Mutation p.G404R 0.42 deleterious(0) benign(0.35) TCGA-EE-A20C-06 5 147024427 147024427 C T JAKMIP2 Missense_Mutation p.E357K 0.48 deleterious(0.02) probably_damaging(0.969) TCGA-EE-A20C-06 5 14716861 14716861 T C ANKH Silent p.E365E 0.46 TCGA-EE-A20C-06 5 149216176 149216176 G A PPARGC1B Missense_Mutation p.E720K 0.32 tolerated(0.05) benign(0.038) TCGA-EE-A20C-06 5 149676816 149676816 G A ARSI Silent p.F557F 0.37 TCGA-EE-A20C-06 5 149782794 149782794 C T CD74 Missense_Mutation p.G236D 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 149782795 149782795 C T CD74 Missense_Mutation p.G236S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 150715005 150715005 G A SLC36A2 Missense_Mutation p.P210L 0.37 deleterious(0.04) probably_damaging(1) TCGA-EE-A20C-06 5 151771723 151771723 G A NMUR2 3'UTR 0.43 TCGA-EE-A20C-06 5 151784030 151784030 G A NMUR2 Silent p.F215F 0.46 TCGA-EE-A20C-06 5 154317726 154317726 C G GEMIN5 5'UTR 0.42 TCGA-EE-A20C-06 5 156484963 156484963 C T HAVCR1 5'UTR 0.40 TCGA-EE-A20C-06 5 156589678 156589678 T C FAM71B Missense_Mutation p.K533R 0.43 tolerated(1) benign(0.026) TCGA-EE-A20C-06 5 159463750 159463750 C T TTC1 Silent p.S148S 0.38 TCGA-EE-A20C-06 5 159841390 159841390 G A SLU7 Missense_Mutation p.P87L 0.48 tolerated(0.29) benign(0.421) TCGA-EE-A20C-06 5 161300198 161300198 C T GABRA1 Missense_Mutation p.L111F 0.47 deleterious(0) possibly_damaging(0.898) TCGA-EE-A20C-06 5 161324243 161324243 G A GABRA1 Missense_Mutation p.E396K 0.37 tolerated(0.51) benign(0.178) TCGA-EE-A20C-06 5 162944718 162944718 T C MAT2B Intron 0.56 TCGA-EE-A20C-06 5 16694605 16694606 - C MYO10 Frame_Shift_Ins p.S1226Lfs*25 0.38 TCGA-EE-A20C-06 5 167653106 167653106 G A TENM2 Missense_Mutation p.G1708S 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 167653107 167653107 G A TENM2 Missense_Mutation p.G1708D 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 167882443 167882443 C T WWC1 Missense_Mutation p.S914F 0.45 deleterious(0.02) benign(0.121) TCGA-EE-A20C-06 5 167882444 167882444 C T WWC1 Silent p.S914S 0.47 TCGA-EE-A20C-06 5 167882523 167882523 C T WWC1 Missense_Mutation p.R941W 0.47 deleterious(0) probably_damaging(0.987) TCGA-EE-A20C-06 5 168690657 168690657 G A SLIT3 Intron 0.32 TCGA-EE-A20C-06 5 168690658 168690658 G A SLIT3 Intron 0.28 TCGA-EE-A20C-06 5 169174492 169174492 C T DOCK2 Missense_Mutation p.T787I 0.39 tolerated(0.17) benign(0.042) TCGA-EE-A20C-06 5 175811271 175811271 G A NOP16 Missense_Mutation p.S136F 0.43 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-EE-A20C-06 5 176941707 176941707 G A DDX41 Silent p.I310I 0.42 TCGA-EE-A20C-06 5 176951758 176951758 G A FAM193B Missense_Mutation p.P575L 0.62 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A20C-06 5 176952110 176952110 C A FAM193B Nonsense_Mutation p.E458* 0.45 TCGA-EE-A20C-06 5 177565240 177565240 G A RMND5B Silent p.R40R 0.63 TCGA-EE-A20C-06 5 178392133 178392133 C T ZNF454 Missense_Mutation p.P243L 0.56 deleterious(0.03) probably_damaging(1) TCGA-EE-A20C-06 5 178413504 178413504 G A GRM6 Missense_Mutation p.P584L 0.71 tolerated(0.16) benign(0.026) TCGA-EE-A20C-06 5 178415971 178415971 A G GRM6 Missense_Mutation p.M440T 0.20 tolerated(0.58) benign(0) TCGA-EE-A20C-06 5 178552073 178552073 G A ADAMTS2 Silent p.S953S 0.41 TCGA-EE-A20C-06 5 178552074 178552074 G A ADAMTS2 Missense_Mutation p.S953F 0.40 deleterious(0.01) possibly_damaging(0.857) TCGA-EE-A20C-06 5 180377460 180377460 A G BTNL8 Silent p.Q473Q 0.46 TCGA-EE-A20C-06 5 1879842 1879842 G A IRX4 Missense_Mutation p.T171I 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 19473339 19473339 G A CDH18 Missense_Mutation p.T790I 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A20C-06 5 23510065 23510065 G A PRDM9 Missense_Mutation p.R77Q 0.40 tolerated_low_confidence(0.22) benign(0.002) TCGA-EE-A20C-06 5 24593569 24593569 G A CDH10 Silent p.L11L 0.46 TCGA-EE-A20C-06 5 26881371 26881371 A T CDH9 Missense_Mutation p.D748E 0.73 tolerated(1) benign(0.001) TCGA-EE-A20C-06 5 32088277 32088277 G A PDZD2 Missense_Mutation p.D1575N 0.50 tolerated(0.44) benign(0.006) TCGA-EE-A20C-06 5 33462103 33462103 T C TARS Silent p.T607T 0.52 TCGA-EE-A20C-06 5 33588706 33588706 C T ADAMTS12 Missense_Mutation p.E955K 0.54 tolerated(0.09) possibly_damaging(0.895) TCGA-EE-A20C-06 5 33588759 33588759 G A ADAMTS12 Missense_Mutation p.S937F 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A20C-06 5 33684080 33684080 G A ADAMTS12 Missense_Mutation p.R239W 0.50 deleterious(0.03) benign(0.077) TCGA-EE-A20C-06 5 33881402 33881402 A T ADAMTS12 Missense_Mutation p.F104Y 0.50 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A20C-06 5 33936765 33936765 G A RXFP3 5'UTR 0.60 TCGA-EE-A20C-06 5 33936766 33936766 G A RXFP3 5'UTR 0.60 TCGA-EE-A20C-06 5 33984337 33984337 C T SLC45A2 Missense_Mutation p.A118T 0.47 tolerated(0.43) benign(0.042) TCGA-EE-A20C-06 5 33984338 33984338 C T SLC45A2 Missense_Mutation p.M117I 0.46 tolerated(0.17) benign(0.084) TCGA-EE-A20C-06 5 34830821 34830821 T C RAI14 Missense_Mutation p.V968A 0.45 tolerated(0.66) probably_damaging(0.999) TCGA-EE-A20C-06 5 3599723 3599723 G A IRX1 Missense_Mutation p.E221K 0.45 deleterious(0) possibly_damaging(0.905) TCGA-EE-A20C-06 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.40 TCGA-EE-A20C-06 5 36984867 36984867 G C NIPBL Missense_Mutation p.G529R 0.40 deleterious_low_confidence(0.04) benign(0.265) TCGA-EE-A20C-06 5 37170386 37170386 G A C5orf42 Silent p.S2073S 0.37 TCGA-EE-A20C-06 5 38482741 38482741 G A LIFR Missense_Mutation p.P874S 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 40835366 40835366 G A RPL37 5'UTR 0.44 TCGA-EE-A20C-06 5 40958162 40958162 G A C7 Missense_Mutation p.E430K 0.28 deleterious(0) probably_damaging(0.929) TCGA-EE-A20C-06 5 40972595 40972595 C T C7 Missense_Mutation p.S658F 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 5 41004599 41004599 G A MROH2B Missense_Mutation p.S1348F 0.57 deleterious(0.04) benign(0.031) TCGA-EE-A20C-06 5 41061756 41061756 C G MROH2B Silent p.L177L 0.42 TCGA-EE-A20C-06 5 41181563 41181563 C T C6 Silent p.G275G 0.42 TCGA-EE-A20C-06 5 41195918 41195918 G A C6 Missense_Mutation p.P188L 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 5 50117067 50117067 C T PARP8 Silent p.S563S 0.52 TCGA-EE-A20C-06 5 52145236 52145236 G A ITGA1 Silent p.V33V 0.53 TCGA-EE-A20C-06 5 55081595 55081595 G A DDX4 Missense_Mutation p.D254N 0.53 tolerated(0.08) benign(0.002) TCGA-EE-A20C-06 5 63256338 63256338 G A HTR1A Silent p.F403F 0.49 TCGA-EE-A20C-06 5 637771 637771 G A CEP72 Silent p.Q348Q 0.36 TCGA-EE-A20C-06 5 637792 637792 G A CEP72 Silent p.E355E 0.35 TCGA-EE-A20C-06 5 66410038 66410038 C T MAST4 Missense_Mutation p.P528S 0.32 probably_damaging(0.937) TCGA-EE-A20C-06 5 66440620 66440620 G A MAST4 Missense_Mutation p.E952K 0.29 possibly_damaging(0.713) TCGA-EE-A20C-06 5 68682074 68682074 A T RAD17 Missense_Mutation p.N267Y 0.52 deleterious(0) possibly_damaging(0.675) TCGA-EE-A20C-06 5 71015033 71015033 G A CARTPT 5'UTR 0.58 TCGA-EE-A20C-06 5 71492963 71492963 C T MAP1B Missense_Mutation p.P1261S 0.48 probably_damaging(0.939) TCGA-EE-A20C-06 5 71494521 71494521 C T MAP1B Missense_Mutation p.P1780L 0.40 probably_damaging(0.985) TCGA-EE-A20C-06 5 71496071 71496071 G A MAP1B Missense_Mutation p.E2297K 0.48 possibly_damaging(0.566) TCGA-EE-A20C-06 5 71757337 71757337 C T ZNF366 Intron 0.49 TCGA-EE-A20C-06 5 73207294 73207294 G A ARHGEF28 Silent p.V1614V 0.29 TCGA-EE-A20C-06 5 73207295 73207295 G A ARHGEF28 Missense_Mutation p.D1615N 0.31 tolerated(0.06) benign(0.053) TCGA-EE-A20C-06 5 74014703 74014703 C T HEXB Missense_Mutation p.P442S 0.37 tolerated(0.41) benign(0.043) TCGA-EE-A20C-06 5 74865175 74865175 T C POLK Missense_Mutation p.F89S 0.47 deleterious(0) benign(0.027) TCGA-EE-A20C-06 5 74879171 74879171 A G POLK Missense_Mutation p.N330D 0.41 deleterious(0.03) benign(0.364) TCGA-EE-A20C-06 5 7757592 7757592 A T ADCY2 Missense_Mutation p.M663L 0.45 tolerated(0.69) benign(0) TCGA-EE-A20C-06 5 79028970 79028970 C T CMYA5 Missense_Mutation p.S1461L 0.58 probably_damaging(0.95) TCGA-EE-A20C-06 5 79057666 79057666 G A CMYA5 Missense_Mutation p.E3765K 0.29 probably_damaging(0.997) TCGA-EE-A20C-06 5 79368145 79368145 G A THBS4 Missense_Mutation p.D589N 0.42 tolerated(0.19) benign(0.002) TCGA-EE-A20C-06 5 79441949 79441949 G A SERINC5 Missense_Mutation p.S401F 0.46 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 5 79970818 79970818 C T MSH3 Silent p.I348I 0.56 TCGA-EE-A20C-06 5 80628364 80628364 A T ACOT12 Silent p.P441P 0.47 TCGA-EE-A20C-06 5 80628365 80628365 G A ACOT12 Missense_Mutation p.P441L 0.47 tolerated(0.08) possibly_damaging(0.828) TCGA-EE-A20C-06 5 86690823 86690823 A T CCNH Intron 0.50 TCGA-EE-A20C-06 5 88025141 88025141 C T MEF2C Silent p.Q296Q 0.38 TCGA-EE-A20C-06 5 89921010 89921010 C T GPR98 Missense_Mutation p.P208S 0.46 benign(0) TCGA-EE-A20C-06 5 89949315 89949315 C T GPR98 Silent p.F1308F 0.40 TCGA-EE-A20C-06 5 9629688 9629688 G A TAS2R1 Missense_Mutation p.P153S 0.47 tolerated(0.12) benign(0.105) TCGA-EE-A20C-06 5 98199227 98199227 G A CHD1 Missense_Mutation p.L1438F 0.53 deleterious(0) possibly_damaging(0.469) TCGA-EE-A20C-06 6 100390991 100390991 G A MCHR2 Silent p.L141L 0.28 TCGA-EE-A20C-06 6 100395698 100395698 G A MCHR2 Missense_Mutation p.S111F 0.47 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A20C-06 6 10419739 10419739 G A TFAP2A 5'Flank 0.51 TCGA-EE-A20C-06 6 106967388 106967388 G A AIM1 Missense_Mutation p.G361R 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.695) TCGA-EE-A20C-06 6 108985383 108985383 G T FOXO3 Missense_Mutation p.Q449H 0.44 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 6 110777963 110777963 T A SLC22A16 Missense_Mutation p.N104I 0.47 tolerated(0.41) benign(0) TCGA-EE-A20C-06 6 11104972 11104972 C T ERVFRD-1 Missense_Mutation p.R191Q 0.59 tolerated(0.19) benign(0) TCGA-EE-A20C-06 6 112435333 112435333 G A LAMA4 Silent p.L1758L 0.51 TCGA-EE-A20C-06 6 114378369 114378369 G A HS3ST5 3'UTR 0.46 TCGA-EE-A20C-06 6 116756761 116756761 G A DSE Missense_Mutation p.S377N 0.55 tolerated(0.16) benign(0.167) TCGA-EE-A20C-06 6 116756814 116756814 G A DSE Missense_Mutation p.E395K 0.35 tolerated(0.16) probably_damaging(0.994) TCGA-EE-A20C-06 6 116756948 116756948 G A DSE Nonsense_Mutation p.W439* 0.53 TCGA-EE-A20C-06 6 116833077 116833077 C T FAM26E Missense_Mutation p.S73L 0.38 tolerated(1) benign(0.002) TCGA-EE-A20C-06 6 117127571 117127571 G A GPRC6A Missense_Mutation p.R433C 0.50 deleterious(0) possibly_damaging(0.903) TCGA-EE-A20C-06 6 123318829 123318829 T G CLVS2 5'UTR 0.36 TCGA-EE-A20C-06 6 123384874 123384874 G T CLVS2 Nonsense_Mutation p.E318* 0.37 TCGA-EE-A20C-06 6 127796827 127796827 C T SOGA3 Missense_Mutation p.D782N 0.44 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A20C-06 6 127797247 127797247 G A SOGA3 Silent p.L642L 0.49 TCGA-EE-A20C-06 6 127898326 127898326 G A C6orf58 5'UTR 0.40 TCGA-EE-A20C-06 6 127912723 127912723 G A C6orf58 Missense_Mutation p.D317N 0.34 tolerated_low_confidence(0.94) benign(0) TCGA-EE-A20C-06 6 128297830 128297830 C T PTPRK Missense_Mutation p.R1320Q 0.38 deleterious(0) probably_damaging(0.975) TCGA-EE-A20C-06 6 128388791 128388791 C T PTPRK Missense_Mutation p.G677E 0.33 tolerated(0.19) benign(0.004) TCGA-EE-A20C-06 6 129637191 129637191 G A LAMA2 Nonsense_Mutation p.W1311* 0.36 TCGA-EE-A20C-06 6 129637224 129637224 A T LAMA2 Missense_Mutation p.R1322S 0.42 tolerated(0.07) benign(0.344) TCGA-EE-A20C-06 6 129774192 129774192 G A LAMA2 Silent p.K2163K 0.50 TCGA-EE-A20C-06 6 129813171 129813171 G A LAMA2 Missense_Mutation p.R2675K 0.48 tolerated(0.69) benign(0.126) TCGA-EE-A20C-06 6 129813188 129813188 G A LAMA2 Missense_Mutation p.E2681K 0.41 tolerated(0.3) benign(0.088) TCGA-EE-A20C-06 6 129824425 129824425 G A LAMA2 Silent p.K2849K 0.50 TCGA-EE-A20C-06 6 130763106 130763106 C T TMEM200A 3'UTR 0.40 TCGA-EE-A20C-06 6 132029792 132029792 G A CTAGE9 3'UTR 0.25 TCGA-EE-A20C-06 6 133118188 133118188 G A SLC18B1 Missense_Mutation p.S39L 0.47 tolerated(0.12) benign(0.066) TCGA-EE-A20C-06 6 133595933 133595933 G A EYA4 Silent p.Q5Q 0.38 TCGA-EE-A20C-06 6 135513576 135513576 C T MYB Silent p.F214F 0.51 TCGA-EE-A20C-06 6 138601299 138601299 C T KIAA1244 Missense_Mutation p.T820I 0.31 deleterious(0.05) benign(0.158) TCGA-EE-A20C-06 6 139094867 139094867 C T CCDC28A Missense_Mutation p.P19L 0.38 tolerated_low_confidence(0.06) benign(0.008) TCGA-EE-A20C-06 6 144262864 144262864 C T PLAGL1 Silent p.K363K 0.45 TCGA-EE-A20C-06 6 144835845 144835845 C T UTRN Silent p.A1711A 0.46 TCGA-EE-A20C-06 6 146264734 146264734 G A SHPRH Missense_Mutation p.P595S 0.32 tolerated_low_confidence(0.82) benign(0.003) TCGA-EE-A20C-06 6 146350677 146350677 T A GRM1 Missense_Mutation p.F8L 0.53 tolerated_low_confidence(0.18) benign(0.001) TCGA-EE-A20C-06 6 150022976 150022976 C T LATS1 Missense_Mutation p.R96Q 0.32 tolerated_low_confidence(0.5) benign(0.155) TCGA-EE-A20C-06 6 151054897 151054897 C T PLEKHG1 Missense_Mutation p.S27F 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 6 151054898 151054898 C T PLEKHG1 Silent p.S27S 0.47 TCGA-EE-A20C-06 6 151914323 151914323 G A CCDC170 Missense_Mutation p.D459N 0.41 tolerated(0.05) probably_damaging(0.954) TCGA-EE-A20C-06 6 152647528 152647528 T C SYNE1 Missense_Mutation p.T5066A 0.45 benign(0.062) TCGA-EE-A20C-06 6 152712533 152712533 G A SYNE1 Missense_Mutation p.A2628V 0.52 benign(0.133) TCGA-EE-A20C-06 6 152841606 152841606 G A SYNE1 Silent p.L99L 0.38 TCGA-EE-A20C-06 6 155569312 155569312 G A TIAM2 Silent p.T1277T 0.38 TCGA-EE-A20C-06 6 155569313 155569313 G A TIAM2 Missense_Mutation p.E1278K 0.38 tolerated(0.08) benign(0.158) TCGA-EE-A20C-06 6 158613180 158613180 C T GTF2H5 Silent p.T69T 0.47 TCGA-EE-A20C-06 6 158924560 158924560 A G TULP4 Missense_Mutation p.K1289E 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A20C-06 6 159457400 159457400 C T TAGAP Missense_Mutation p.R552Q 0.48 tolerated(0.07) probably_damaging(0.988) TCGA-EE-A20C-06 6 160163129 160163129 A T WTAP Missense_Mutation p.Q32H 0.59 deleterious(0) possibly_damaging(0.748) TCGA-EE-A20C-06 6 160221727 160221727 C T PNLDC1 5'UTR 0.47 TCGA-EE-A20C-06 6 160670397 160670397 C T SLC22A2 Silent p.R231R 0.33 TCGA-EE-A20C-06 6 160679486 160679486 C T SLC22A2 Missense_Mutation p.D102N 0.42 tolerated(0.13) benign(0.015) TCGA-EE-A20C-06 6 160679735 160679735 G A SLC22A2 Nonsense_Mutation p.Q19* 0.48 TCGA-EE-A20C-06 6 160908348 160908348 T A LPAL2 Intron 0.65 TCGA-EE-A20C-06 6 160977130 160977130 C T LPA Missense_Mutation p.G1634R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 6 166571778 166571778 C T T 3'UTR 0.44 TCGA-EE-A20C-06 6 167438347 167438347 C T FGFR1OP Missense_Mutation p.S295F 0.42 deleterious(0) possibly_damaging(0.832) TCGA-EE-A20C-06 6 167786826 167786826 G A TCP10 Missense_Mutation p.S271F 0.14 tolerated(0.07) possibly_damaging(0.466) TCGA-EE-A20C-06 6 168272950 168272950 C T MLLT4 Silent p.F157F 0.44 TCGA-EE-A20C-06 6 18572020 18572020 G A MIR548A1 RNA 0.71 TCGA-EE-A20C-06 6 24551711 24551711 G A KIAA0319 Silent p.I997I 0.25 TCGA-EE-A20C-06 6 24654716 24654716 G A TDP2 Missense_Mutation p.S187L 0.58 deleterious(0.04) benign(0.16) TCGA-EE-A20C-06 6 25973439 25973439 C T TRIM38 Missense_Mutation p.S267F 0.47 tolerated(0.12) possibly_damaging(0.784) TCGA-EE-A20C-06 6 25973440 25973440 C T TRIM38 Silent p.S267S 0.50 TCGA-EE-A20C-06 6 26271468 26271468 G A HIST1H3G Silent p.L49L 0.53 TCGA-EE-A20C-06 6 26598804 26598804 G A ABT1 Silent p.L250L 0.39 TCGA-EE-A20C-06 6 27368998 27368998 G A ZNF391 Silent p.G283G 0.67 TCGA-EE-A20C-06 6 28227220 28227220 C T NKAPL Missense_Mutation p.S24L 0.52 tolerated(0.08) unknown(0) TCGA-EE-A20C-06 6 28540405 28540405 G A SCAND3 Silent p.P1087P 0.43 TCGA-EE-A20C-06 6 2900775 2900775 G A SERPINB9 Missense_Mutation p.P24L 0.27 deleterious(0.03) possibly_damaging(0.789) TCGA-EE-A20C-06 6 29012427 29012427 G A OR2W1 Missense_Mutation p.H176Y 0.54 deleterious(0) probably_damaging(0.928) TCGA-EE-A20C-06 6 29454781 29454781 G A MAS1L Missense_Mutation p.S300F 0.56 tolerated(0.2) benign(0.09) TCGA-EE-A20C-06 6 29556693 29556693 G A OR2H2 3'UTR 0.29 TCGA-EE-A20C-06 6 30892178 30892178 C T VARS2 Silent p.P868P 0.65 TCGA-EE-A20C-06 6 31555456 31555456 C T LST1 Silent p.L20L 0.44 TCGA-EE-A20C-06 6 31721350 31721350 C T MSH5 Silent p.L320L 0.59 TCGA-EE-A20C-06 6 31911056 31911056 C T CFB Missense_Mutation p.A319V 0.32 deleterious(0.01) possibly_damaging(0.728) TCGA-EE-A20C-06 6 31915290 31915290 C T CFB Missense_Mutation p.S719F 0.62 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A20C-06 6 32020699 32020699 G A TNXB Silent p.L2953L 0.28 TCGA-EE-A20C-06 6 32030125 32030125 G A TNXB Missense_Mutation p.P2326L 0.56 probably_damaging(0.996) TCGA-EE-A20C-06 6 32097394 32097394 G A FKBPL Missense_Mutation p.P55L 0.31 deleterious_low_confidence(0.01) benign(0.002) TCGA-EE-A20C-06 6 32135002 32135002 C T EGFL8 Missense_Mutation p.P190L 0.59 deleterious(0.04) benign(0.002) TCGA-EE-A20C-06 6 32169935 32169935 G A NOTCH4 Missense_Mutation p.R1225W 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20C-06 6 32169936 32169936 G A NOTCH4 Silent p.F1224F 0.56 TCGA-EE-A20C-06 6 32411162 32411162 C T HLA-DRA Missense_Mutation p.P177S 0.44 deleterious(0.05) benign(0.037) TCGA-EE-A20C-06 6 32489901 32489901 C T HLA-DRB5 Missense_Mutation p.E51K 0.88 deleterious(0.03) possibly_damaging(0.638) TCGA-EE-A20C-06 6 33639824 33639824 C T ITPR3 Missense_Mutation p.S916F 0.37 deleterious(0) possibly_damaging(0.707) TCGA-EE-A20C-06 6 35392603 35392603 C T PPARD Intron 0.39 TCGA-EE-A20C-06 6 35773644 35773644 C T LHFPL5 Missense_Mutation p.S66F 0.49 deleterious(0.01) probably_damaging(0.917) TCGA-EE-A20C-06 6 35836854 35836854 G A SRPK1 Missense_Mutation p.P482L 0.25 deleterious(0.04) possibly_damaging(0.713) TCGA-EE-A20C-06 6 35911718 35911718 C T SLC26A8 Missense_Mutation p.D958N 0.42 tolerated_low_confidence(0.72) benign(0.001) TCGA-EE-A20C-06 6 36107226 36107226 C T MAPK13 3'UTR 0.47 TCGA-EE-A20C-06 6 36270045 36270045 G A PNPLA1 Missense_Mutation p.G395R 0.39 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A20C-06 6 36298049 36298049 C T C6orf222 Missense_Mutation p.G140E 0.49 tolerated(0.5) benign(0.277) TCGA-EE-A20C-06 6 37623614 37623614 G A MDGA1 Silent p.F147F 0.26 TCGA-EE-A20C-06 6 38899589 38899589 G A DNAH8 Silent p.V3542V 0.19 TCGA-EE-A20C-06 6 38950129 38950129 G A DNAH8 Missense_Mutation p.R4064Q 0.20 probably_damaging(0.964) TCGA-EE-A20C-06 6 38951982 38951982 G A DNAH8 Missense_Mutation p.G4101S 0.53 probably_damaging(0.955) TCGA-EE-A20C-06 6 38998189 38998189 G A DNAH8 3'UTR 0.37 TCGA-EE-A20C-06 6 39330294 39330294 C T KIF6 Missense_Mutation p.G621E 0.49 tolerated(0.08) benign(0.078) TCGA-EE-A20C-06 6 40399681 40399681 G A LRFN2 Missense_Mutation p.P391L 0.15 tolerated(0.19) benign(0.001) TCGA-EE-A20C-06 6 41318469 41318469 A T NCR2 Missense_Mutation p.K233I 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-EE-A20C-06 6 41712480 41712480 G A PGC Silent p.F42F 0.54 TCGA-EE-A20C-06 6 42233512 42233512 G A TRERF1 Silent p.A487A 0.79 TCGA-EE-A20C-06 6 42797892 42797892 G A GLTSCR1L Silent p.Q607Q 0.47 TCGA-EE-A20C-06 6 43016083 43016083 G A CUL7 Silent p.L768L 0.51 TCGA-EE-A20C-06 6 43155681 43155681 C T CUL9 Silent p.F604F 0.42 TCGA-EE-A20C-06 6 43305536 43305536 G A ZNF318 Missense_Mutation p.S2067F 0.43 possibly_damaging(0.898) TCGA-EE-A20C-06 6 43305569 43305569 G A ZNF318 Missense_Mutation p.S2056F 0.51 benign(0.317) TCGA-EE-A20C-06 6 43745274 43745274 C T VEGFA Nonsense_Mutation p.Q243* 0.51 TCGA-EE-A20C-06 6 44137193 44137193 A G CAPN11 Silent p.E88E 0.76 TCGA-EE-A20C-06 6 45917092 45917092 G T CLIC5 Missense_Mutation p.A226D 0.53 deleterious(0) probably_damaging(0.99) TCGA-EE-A20C-06 6 45917093 45917093 C A CLIC5 Missense_Mutation p.A226S 0.52 deleterious(0.03) probably_damaging(0.934) TCGA-EE-A20C-06 6 46657352 46657352 T - TDRD6 Frame_Shift_Del p.N498Ifs*9 0.41 TCGA-EE-A20C-06 6 46660891 46660891 G A TDRD6 Missense_Mutation p.D1676N 0.53 tolerated(0.33) benign(0.005) TCGA-EE-A20C-06 6 47253685 47253685 G A TNFRSF21 Missense_Mutation p.P248L 0.33 deleterious(0.03) benign(0.005) TCGA-EE-A20C-06 6 49582400 49582400 C T RHAG Missense_Mutation p.M269I 0.51 deleterious(0.02) benign(0.294) TCGA-EE-A20C-06 6 49754106 49754106 G A PGK2 Silent p.I265I 0.53 TCGA-EE-A20C-06 6 49754496 49754496 G A PGK2 Silent p.P135P 0.50 TCGA-EE-A20C-06 6 49754544 49754544 C T PGK2 Silent p.L119L 0.48 TCGA-EE-A20C-06 6 50683037 50683037 C T TFAP2D Missense_Mutation p.P83L 0.44 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-EE-A20C-06 6 51612696 51612696 G A PKHD1 Nonsense_Mutation p.R3240* 0.48 TCGA-EE-A20C-06 6 55147032 55147032 G A HCRTR2 Missense_Mutation p.R372Q 0.67 deleterious(0) probably_damaging(0.985) TCGA-EE-A20C-06 6 55223891 55223891 T C GFRAL Silent p.L303L 0.69 TCGA-EE-A20C-06 6 56323978 56323978 G A DST Missense_Mutation p.S5114L 0.30 probably_damaging(0.999) TCGA-EE-A20C-06 6 57015741 57015741 C T ZNF451 Intron 0.48 TCGA-EE-A20C-06 6 57048591 57048591 T G BAG2 Nonsense_Mutation p.L80* 0.47 TCGA-EE-A20C-06 6 57512514 57512514 T A PRIM2 3'UTR 0.19 TCGA-EE-A20C-06 6 69348921 69348921 C T BAI3 Silent p.F118F 0.51 TCGA-EE-A20C-06 6 69703688 69703688 G A BAI3 Missense_Mutation p.R588Q 0.48 deleterious(0) possibly_damaging(0.752) TCGA-EE-A20C-06 6 70812072 70812072 G A COL19A1 Silent p.G412G 0.28 TCGA-EE-A20C-06 6 70926715 70926715 C T COL9A1 Missense_Mutation p.G884E 0.53 probably_damaging(1) TCGA-EE-A20C-06 6 72975145 72975145 T C RIMS1 Missense_Mutation p.S1083P 0.32 tolerated(0.4) benign(0) TCGA-EE-A20C-06 6 7373394 7373394 C T CAGE1 Missense_Mutation p.R553K 0.26 tolerated(0.51) possibly_damaging(0.87) TCGA-EE-A20C-06 6 7567682 7567682 G A DSP Silent p.Q380Q 0.24 TCGA-EE-A20C-06 6 7583554 7583554 G A DSP Missense_Mutation p.G2020E 0.23 probably_damaging(1) TCGA-EE-A20C-06 6 75857388 75857388 C A COL12A1 Intron 0.38 TCGA-EE-A20C-06 6 76022531 76022531 G A FILIP1 Missense_Mutation p.P1006L 0.45 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 6 76024143 76024143 C T FILIP1 Missense_Mutation p.E469K 0.43 deleterious(0) possibly_damaging(0.492) TCGA-EE-A20C-06 6 76388549 76388549 C T SENP6 Missense_Mutation p.P661S 0.50 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 6 76388550 76388550 C T SENP6 Missense_Mutation p.P661L 0.59 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 6 76751689 76751689 G A IMPG1 Silent p.F74F 0.57 TCGA-EE-A20C-06 6 79607566 79607566 A G IRAK1BP1 Silent p.E134E 0.48 TCGA-EE-A20C-06 6 80197313 80197313 G A LCA5 Missense_Mutation p.S501F 0.36 tolerated(0.07) benign(0.128) TCGA-EE-A20C-06 6 84270587 84270587 C T SNAP91 Missense_Mutation p.G841E 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A20C-06 6 84292075 84292075 C T SNAP91 Missense_Mutation p.G672E 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20C-06 6 84366533 84366533 G A SNAP91 Missense_Mutation p.L200F 0.50 deleterious(0) unknown(0) TCGA-EE-A20C-06 6 88138360 88138360 T A C6ORF165 Missense_Mutation p.L326H 0.50 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 6 90394612 90394612 G A MDN1 Silent p.L3938L 0.40 TCGA-EE-A20C-06 6 93982049 93982049 G A EPHA7 Silent p.V472V 0.40 TCGA-EE-A20C-06 6 96651992 96651992 G A FUT9 Missense_Mutation p.D321N 0.45 tolerated(0.29) benign(0.016) TCGA-EE-A20C-06 6 97246859 97246859 G A GPR63 Missense_Mutation p.S250F 0.54 tolerated(0.39) benign(0.004) TCGA-EE-A20C-06 6 97562022 97562022 C T KLHL32 Missense_Mutation p.P331S 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A20C-06 7 100184214 100184214 C T FBXO24 5'Flank 0.43 TCGA-EE-A20C-06 7 100686139 100686139 T A MUC17 Silent p.T3814T 0.48 TCGA-EE-A20C-06 7 100686596 100686596 A G MUC17 Missense_Mutation p.T3967A 0.44 benign(0.058) TCGA-EE-A20C-06 7 101917540 101917540 A C CUX1 Missense_Mutation p.K468T 0.38 tolerated(0.7) benign(0.003) TCGA-EE-A20C-06 7 102098210 102098210 C T ALKBH4 Silent p.L180L 0.31 TCGA-EE-A20C-06 7 102916026 102916026 G A DPY19L2P2 RNA 0.38 TCGA-EE-A20C-06 7 103179574 103179574 G A RELN Silent p.F2377F 0.49 TCGA-EE-A20C-06 7 103214737 103214737 C T RELN Missense_Mutation p.G1438E 0.35 tolerated(0.4) probably_damaging(0.992) TCGA-EE-A20C-06 7 107115426 107115426 A C GPR22 Missense_Mutation p.R307S 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A20C-06 7 107603364 107603364 G A LAMB1 Missense_Mutation p.R615C 0.38 deleterious(0) benign(0.052) TCGA-EE-A20C-06 7 113519910 113519910 C T PPP1R3A Missense_Mutation p.G413R 0.30 tolerated(0.54) benign(0.015) TCGA-EE-A20C-06 7 117175322 117175322 C T CFTR Silent p.F200F 0.44 TCGA-EE-A20C-06 7 122755593 122755593 C T SLC13A1 Missense_Mutation p.M589I 0.61 tolerated(0.47) benign(0) TCGA-EE-A20C-06 7 122769502 122769502 T A SLC13A1 Missense_Mutation p.K322N 0.52 deleterious(0.01) possibly_damaging(0.744) TCGA-EE-A20C-06 7 123594482 123594482 C T SPAM1 Silent p.I286I 0.31 TCGA-EE-A20C-06 7 126542627 126542627 C T GRM8 Silent p.G375G 0.32 TCGA-EE-A20C-06 7 128369968 128369968 C T FAM71F1 Missense_Mutation p.S289F 0.39 tolerated(0.7) benign(0.129) TCGA-EE-A20C-06 7 130020994 130020994 G A CPA1 Missense_Mutation p.E41K 0.36 tolerated(0.09) benign(0.023) TCGA-EE-A20C-06 7 130147558 130147558 G A MEST 3'Flank 0.40 TCGA-EE-A20C-06 7 137801429 137801429 G A AKR1D1 3'UTR 0.50 TCGA-EE-A20C-06 7 138418995 138418995 C T ATP6V0A4 Nonsense_Mutation p.W526* 0.42 TCGA-EE-A20C-06 7 138444555 138444555 C T ATP6V0A4 Missense_Mutation p.R194Q 0.46 deleterious(0.01) possibly_damaging(0.819) TCGA-EE-A20C-06 7 138602660 138602660 G A KIAA1549 Missense_Mutation p.S571F 0.58 deleterious(0.03) benign(0.395) TCGA-EE-A20C-06 7 138603463 138603463 G A KIAA1549 Silent p.S303S 0.32 TCGA-EE-A20C-06 7 139801761 139801761 G A KDM7A Missense_Mutation p.P543L 0.51 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 7 140107532 140107532 G A RAB19 Missense_Mutation p.G29E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 7 141536104 141536104 C T PRSS37 3'UTR 0.55 TCGA-EE-A20C-06 7 141755448 141755448 G A MGAM Silent p.G1135G 0.48 TCGA-EE-A20C-06 7 142028558 142028558 G A TRBV6-1 Missense_Mutation p.E98K 0.50 tolerated(0.18) benign(0.055) TCGA-EE-A20C-06 7 142032452 142032452 G A TRBV7-1 Missense_Mutation p.G91E 0.46 tolerated(0.12) benign(0.132) TCGA-EE-A20C-06 7 142099722 142099722 G A TRBV7-8 Missense_Mutation p.P27L 0.37 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A20C-06 7 142099723 142099723 G A TRBV7-8 Missense_Mutation p.P27S 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 7 142326771 142326771 C T TRBV19 Silent p.I23I 0.39 TCGA-EE-A20C-06 7 142428841 142428841 C T TRBV28 Silent p.F67F 0.58 TCGA-EE-A20C-06 7 142428886 142428886 G A TRBV28 Silent p.G82G 0.53 TCGA-EE-A20C-06 7 142448481 142448481 G A TRBV29-1 Silent p.R25R 0.42 TCGA-EE-A20C-06 7 143088507 143088507 C T EPHA1 3'UTR 0.50 TCGA-EE-A20C-06 7 143090820 143090820 C T EPHA1 Silent p.L880L 0.46 TCGA-EE-A20C-06 7 143270350 143270350 G A CTAGE15 Silent p.R480R 0.16 TCGA-EE-A20C-06 7 143701623 143701623 C T OR6B1 Silent p.F178F 0.56 TCGA-EE-A20C-06 7 143772038 143772038 C T OR2A25 Silent p.S242S 0.48 TCGA-EE-A20C-06 7 143792412 143792412 C T OR2A12 Missense_Mutation p.S71F 0.58 deleterious(0.03) benign(0.013) TCGA-EE-A20C-06 7 143882694 143882694 C T CTAGE4 Missense_Mutation p.P700S 0.11 deleterious(0.02) benign(0.169) TCGA-EE-A20C-06 7 147926841 147926841 C T CNTNAP2 Silent p.I1117I 0.53 TCGA-EE-A20C-06 7 148802302 148802302 G A ZNF425 Missense_Mutation p.P221S 0.36 tolerated(0.23) benign(0.006) TCGA-EE-A20C-06 7 149475892 149475892 G A SSPO RNA 0.37 TCGA-EE-A20C-06 7 150164277 150164277 G A GIMAP8 Missense_Mutation p.R164Q 0.38 tolerated(0.11) possibly_damaging(0.831) TCGA-EE-A20C-06 7 150171516 150171516 G A GIMAP8 Missense_Mutation p.E367K 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 7 150174719 150174719 C T GIMAP8 Missense_Mutation p.L617F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 7 150490270 150490270 G A TMEM176B Missense_Mutation p.P169L 0.92 deleterious(0.05) benign(0.058) TCGA-EE-A20C-06 7 150500716 150500716 G A TMEM176A Silent p.L117L 0.47 TCGA-EE-A20C-06 7 151135226 151135226 G A CRYGN Silent p.I42I 0.36 TCGA-EE-A20C-06 7 151877025 151877025 G A KMT2C Missense_Mutation p.P2446S 0.43 benign(0.014) TCGA-EE-A20C-06 7 155537941 155537941 T G RBM33 Missense_Mutation p.L875R 0.60 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A20C-06 7 156447389 156447389 G A RNF32 Missense_Mutation p.E132K 0.44 deleterious(0) possibly_damaging(0.755) TCGA-EE-A20C-06 7 156476745 156476745 G A LMBR1 3'UTR 0.47 TCGA-EE-A20C-06 7 156476746 156476746 G A LMBR1 3'UTR 0.47 TCGA-EE-A20C-06 7 156518178 156518178 C T LMBR1 Missense_Mutation p.R370Q 0.45 deleterious(0.04) possibly_damaging(0.821) TCGA-EE-A20C-06 7 156742426 156742426 C T NOM1 5'UTR 0.56 TCGA-EE-A20C-06 7 157926530 157926530 G A PTPRN2 Silent p.P465P 0.48 TCGA-EE-A20C-06 7 157926531 157926531 G C PTPRN2 Missense_Mutation p.P465R 0.48 deleterious(0.03) benign(0.005) TCGA-EE-A20C-06 7 158531734 158531734 G A ESYT2 Silent p.I776I 0.37 TCGA-EE-A20C-06 7 18066979 18066979 C T PRPS1L1 Missense_Mutation p.D143N 1.00 deleterious(0) probably_damaging(0.972) TCGA-EE-A20C-06 7 30492343 30492343 G T NOD1 Missense_Mutation p.F230L 0.95 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A20C-06 7 30961803 30961803 C T AQP1 Silent p.P169P 0.87 TCGA-EE-A20C-06 7 30961804 30961804 C T AQP1 Missense_Mutation p.L170F 0.87 deleterious(0.02) probably_damaging(1) TCGA-EE-A20C-06 7 31617984 31617984 C A CCDC129 Missense_Mutation p.T395N 0.97 deleterious(0.01) possibly_damaging(0.72) TCGA-EE-A20C-06 7 31683223 31683223 G A CCDC129 Missense_Mutation p.E773K 0.93 tolerated(0.52) benign(0.039) TCGA-EE-A20C-06 7 38288882 38288882 C T TRGC2 Missense_Mutation p.G98E 0.88 tolerated(0.06) possibly_damaging(0.553) TCGA-EE-A20C-06 7 38370429 38370429 C T TRGV8 5'UTR 0.54 TCGA-EE-A20C-06 7 40085496 40085496 C T CDK13 Silent p.G805G 0.97 TCGA-EE-A20C-06 7 44179140 44179140 C T MYL7 Missense_Mutation p.D136N 0.95 deleterious(0) possibly_damaging(0.871) TCGA-EE-A20C-06 7 44228644 44228644 G C GCK 5'UTR 0.96 TCGA-EE-A20C-06 7 45104172 45104172 G A CCM2 Silent p.R154R 0.88 TCGA-EE-A20C-06 7 47892794 47892794 G A PKD1L1 Missense_Mutation p.L1631F 0.80 tolerated(0.07) probably_damaging(0.949) TCGA-EE-A20C-06 7 50611728 50611728 T C DDC Missense_Mutation p.N19S 0.91 deleterious(0.05) benign(0.027) TCGA-EE-A20C-06 7 51261210 51261210 G A COBL Missense_Mutation p.R108W 0.94 tolerated(0.24) benign(0.079) TCGA-EE-A20C-06 7 55242439 55242439 A G EGFR Missense_Mutation p.K737E 0.95 deleterious(0.03) possibly_damaging(0.456) TCGA-EE-A20C-06 7 56174059 56174059 G A CHCHD2 Silent p.A16A 0.86 TCGA-EE-A20C-06 7 56174060 56174060 G A CHCHD2 Missense_Mutation p.A16V 0.85 tolerated(0.12) unknown(0) TCGA-EE-A20C-06 7 5662660 5662660 G A RNF216 Missense_Mutation p.P868L 0.96 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A20C-06 7 62751990 62751990 G A ZNF733P RNA 0.29 TCGA-EE-A20C-06 7 65444842 65444842 G A GUSB Silent p.A151A 0.48 TCGA-EE-A20C-06 7 65546834 65546834 C T ASL Silent p.P19P 0.67 TCGA-EE-A20C-06 7 65548151 65548151 C T ASL Missense_Mutation p.R146W 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 7 70800703 70800703 G A WBSCR17 Missense_Mutation p.D136N 0.34 deleterious(0) benign(0.292) TCGA-EE-A20C-06 7 72744286 72744286 C T FKBP6 Silent p.V133V 0.33 TCGA-EE-A20C-06 7 72954228 72954228 G A BCL7B Silent p.G140G 0.49 TCGA-EE-A20C-06 7 72985160 72985160 G A TBL2 Missense_Mutation p.P341S 0.46 deleterious(0) possibly_damaging(0.893) TCGA-EE-A20C-06 7 75511493 75511493 G A RHBDD2 Silent p.S175S 0.56 TCGA-EE-A20C-06 7 77755155 77755155 C T MAGI2 Splice_Site p.X1142_splice 0.35 TCGA-EE-A20C-06 7 80299284 80299284 C T CD36 Missense_Mutation p.P255L 0.42 deleterious(0) possibly_damaging(0.833) TCGA-EE-A20C-06 7 8167582 8167582 G A ICA1 Silent p.P417P 0.95 TCGA-EE-A20C-06 7 8167583 8167583 G A ICA1 Missense_Mutation p.P417L 0.95 tolerated(0.22) benign(0.002) TCGA-EE-A20C-06 7 82579027 82579027 G A PCLO Missense_Mutation p.P3626L 0.41 unknown(0) TCGA-EE-A20C-06 7 82579263 82579263 T C PCLO Silent p.V3547V 0.46 TCGA-EE-A20C-06 7 82585290 82585290 C T PCLO Missense_Mutation p.G1660E 0.49 unknown(0) TCGA-EE-A20C-06 7 82585431 82585431 C T PCLO Missense_Mutation p.R1613Q 0.43 unknown(0) TCGA-EE-A20C-06 7 8272378 8272378 G A ICA1 Missense_Mutation p.P9S 0.93 tolerated_low_confidence(1) benign(0) TCGA-EE-A20C-06 7 88424098 88424098 C T C7orf62 Silent p.V53V 0.37 TCGA-EE-A20C-06 7 892478 892478 C T SUN1 Silent p.F314F 0.90 TCGA-EE-A20C-06 7 92848520 92848520 A T HEPACAM2 Silent p.L108L 0.45 TCGA-EE-A20C-06 7 93516149 93516149 G A TFPI2 Missense_Mutation p.R231W 0.48 tolerated(0.18) benign(0) TCGA-EE-A20C-06 7 94024277 94024277 G A COL1A2 5'UTR 0.55 TCGA-EE-A20C-06 7 94164815 94164815 C T CASD1 Missense_Mutation p.P275S 0.39 tolerated(0.25) possibly_damaging(0.802) TCGA-EE-A20C-06 7 97823288 97823288 T A LMTK2 Missense_Mutation p.S1171T 0.58 tolerated(0.37) benign(0.015) TCGA-EE-A20C-06 7 97851721 97851721 G A TECPR1 Missense_Mutation p.S1014F 0.40 deleterious(0) probably_damaging(0.932) TCGA-EE-A20C-06 7 98562331 98562331 C T TRRAP Silent p.S2296S 0.55 TCGA-EE-A20C-06 7 99084288 99084288 G A ZNF789 Missense_Mutation p.R152K 0.32 tolerated(1) benign(0) TCGA-EE-A20C-06 7 99084289 99084289 G A ZNF789 Silent p.R152R 0.32 TCGA-EE-A20C-06 7 99367481 99367481 T G CYP3A4 Splice_Site p.X145_splice 0.49 TCGA-EE-A20C-06 7 99998825 99998825 C T ZCWPW1 Missense_Mutation p.E587K 0.44 tolerated_low_confidence(0.07) benign(0.091) TCGA-EE-A20C-06 8 101083691 101083691 G A RGS22 Missense_Mutation p.P167L 0.57 deleterious(0) possibly_damaging(0.851) TCGA-EE-A20C-06 8 101083692 101083692 G A RGS22 Missense_Mutation p.P167S 0.57 deleterious(0.03) benign(0.197) TCGA-EE-A20C-06 8 102381364 102381364 G A NACAP1 RNA 0.63 TCGA-EE-A20C-06 8 102381365 102381365 G A NACAP1 RNA 0.61 TCGA-EE-A20C-06 8 103573192 103573192 C T ODF1 3'UTR 0.42 TCGA-EE-A20C-06 8 103573193 103573193 C T ODF1 3'UTR 0.36 TCGA-EE-A20C-06 8 104928661 104928661 G A RIMS2 Nonsense_Mutation p.W644* 0.26 TCGA-EE-A20C-06 8 105161027 105161027 C T RIMS2 Intron 0.53 TCGA-EE-A20C-06 8 109796663 109796663 G C TMEM74 Missense_Mutation p.A222G 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 8 110355795 110355795 C T ENY2 3'UTR 0.60 TCGA-EE-A20C-06 8 110396348 110396348 G A PKHD1L1 Missense_Mutation p.G156E 0.62 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A20C-06 8 113266484 113266484 G A CSMD3 Nonsense_Mutation p.Q3370* 0.29 TCGA-EE-A20C-06 8 113301638 113301638 C G CSMD3 Missense_Mutation p.C3035S 0.53 deleterious(0.02) possibly_damaging(0.9) TCGA-EE-A20C-06 8 118147606 118147606 G A SLC30A8 Missense_Mutation p.A14T 0.31 tolerated(0.17) benign(0.02) TCGA-EE-A20C-06 8 118159337 118159337 G A SLC30A8 Nonsense_Mutation p.W72* 0.23 TCGA-EE-A20C-06 8 119391932 119391932 G A SAMD12 Silent p.A110A 0.50 TCGA-EE-A20C-06 8 120759033 120759033 G A TAF2 Missense_Mutation p.P1007L 0.66 tolerated(0.13) benign(0.093) TCGA-EE-A20C-06 8 123964304 123964304 C T ZHX2 Missense_Mutation p.P185L 0.62 deleterious(0.02) benign(0.113) TCGA-EE-A20C-06 8 124105884 124105884 C T TBC1D31 Silent p.S191S 0.58 TCGA-EE-A20C-06 8 124138819 124138819 C T TBC1D31 Silent p.F592F 0.63 TCGA-EE-A20C-06 8 12947854 12947854 G C DLC1 Missense_Mutation p.D1327E 0.77 tolerated(0.3) benign(0.044) TCGA-EE-A20C-06 8 131922025 131922025 C T ADCY8 Silent p.R523R 0.32 TCGA-EE-A20C-06 8 131949404 131949404 A T ADCY8 Missense_Mutation p.Y466N 0.71 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 133047064 133047064 C T OC90 Missense_Mutation p.E233K 0.37 tolerated(0.3) benign(0.02) TCGA-EE-A20C-06 8 133053841 133053841 C T OC90 Missense_Mutation p.R92Q 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 133900807 133900807 C T TG Missense_Mutation p.P919S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 134108473 134108473 C T TG Silent p.F2476F 0.30 TCGA-EE-A20C-06 8 134108474 134108474 C T TG Missense_Mutation p.H2477Y 0.29 deleterious(0) benign(0.109) TCGA-EE-A20C-06 8 134237763 134237763 T C WISP1 Silent p.P247P 0.60 TCGA-EE-A20C-06 8 139151271 139151271 C T FAM135B Missense_Mutation p.D1287N 0.65 deleterious(0.02) probably_damaging(0.909) TCGA-EE-A20C-06 8 139163733 139163733 G A FAM135B Silent p.S995S 0.17 TCGA-EE-A20C-06 8 139164962 139164962 C T FAM135B Missense_Mutation p.G586R 0.24 tolerated(0.52) benign(0.002) TCGA-EE-A20C-06 8 139380195 139380195 G A FAM135B Missense_Mutation p.S11L 0.51 deleterious(0) benign(0.075) TCGA-EE-A20C-06 8 140631244 140631244 G A KCNK9 Silent p.L128L 0.74 TCGA-EE-A20C-06 8 141551433 141551433 G A AGO2 Missense_Mutation p.P622S 0.45 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A20C-06 8 141799593 141799593 G A PTK2 Missense_Mutation p.T386I 0.51 tolerated(0.1) benign(0.148) TCGA-EE-A20C-06 8 143957150 143957150 C T CYP11B1 Missense_Mutation p.A367T 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 8 144590010 144590010 G A ZC3H3 Missense_Mutation p.R541C 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 144620642 144620698 CAACCAGCGAGGCCTCCCGGGCCTGCCTGGGTCCTGAGGCCGGTCTGGCGGGGCCCC - ZC3H3 In_Frame_Del p.G280_V298del 0.21 TCGA-EE-A20C-06 8 144940397 144940397 T C EPPK1 Missense_Mutation p.Q2342R 0.09 probably_damaging(0.999) TCGA-EE-A20C-06 8 144992198 144992198 C T PLEC Missense_Mutation p.G4068S 0.50 probably_damaging(1) TCGA-EE-A20C-06 8 145657820 145657820 A G TONSL Missense_Mutation p.S1195P 0.60 tolerated(0.09) possibly_damaging(0.724) TCGA-EE-A20C-06 8 146066810 146066810 G A ZNF7 Silent p.G106G 0.29 TCGA-EE-A20C-06 8 19221715 19221715 C T SH2D4A Missense_Mutation p.P280L 0.56 tolerated(0.32) benign(0.009) TCGA-EE-A20C-06 8 22474992 22474992 C T CCAR2 Silent p.P635P 0.88 TCGA-EE-A20C-06 8 22865629 22865629 G T RHOBTB2 Intron 0.64 TCGA-EE-A20C-06 8 24250837 24250837 C T ADAMDEC1 Silent p.S90S 0.76 TCGA-EE-A20C-06 8 24775240 24775240 G A NEFM Silent p.E624E 0.60 TCGA-EE-A20C-06 8 30938556 30938556 T G WRN Missense_Mutation p.V338G 0.58 tolerated(0.45) benign(0) TCGA-EE-A20C-06 8 32620873 32620873 G A NRG1 Intron 1.00 TCGA-EE-A20C-06 8 39780118 39780118 G A IDO1 Missense_Mutation p.G162E 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 42231868 42231868 C T DKK4 Missense_Mutation p.G142E 0.89 deleterious(0) probably_damaging(0.994) TCGA-EE-A20C-06 8 42231869 42231869 C T DKK4 Missense_Mutation p.G142R 0.89 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A20C-06 8 42294534 42294534 G A SLC20A2 Missense_Mutation p.S499F 0.78 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 8 42552732 42552732 C T CHRNB3 Missense_Mutation p.P15S 0.70 tolerated(0.55) benign(0) TCGA-EE-A20C-06 8 43147879 43147879 C T POTEA RNA 0.80 TCGA-EE-A20C-06 8 43171082 43171082 G A POTEA RNA 0.82 TCGA-EE-A20C-06 8 49985432 49985432 C T C8orf22 Nonsense_Mutation p.Q15* 0.59 TCGA-EE-A20C-06 8 49986891 49986891 G A C8orf22 Missense_Mutation p.G78R 0.27 deleterious(0.05) possibly_damaging(0.801) TCGA-EE-A20C-06 8 53084866 53084866 G C ST18 Silent p.P185P 0.66 TCGA-EE-A20C-06 8 53586681 53586681 G A RB1CC1 Silent p.L242L 0.56 TCGA-EE-A20C-06 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.50 tolerated(0.85) benign(0.006) TCGA-EE-A20C-06 8 55540513 55540513 T G RP1 Missense_Mutation p.D1357E 0.57 tolerated(1) benign(0) TCGA-EE-A20C-06 8 55540842 55540842 C T RP1 Missense_Mutation p.S1467F 0.90 deleterious(0) probably_damaging(0.997) TCGA-EE-A20C-06 8 55542494 55542494 G T RP1 Nonsense_Mutation p.E2018* 0.61 TCGA-EE-A20C-06 8 56879362 56879362 C T LYN Silent p.L293L 0.39 TCGA-EE-A20C-06 8 62212441 62212441 G A CLVS1 Missense_Mutation p.D19N 0.39 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A20C-06 8 65517283 65517283 G A CYP7B1 Missense_Mutation p.P397S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 8 67064807 67064807 C T TRIM55 Missense_Mutation p.S394F 0.23 tolerated(0.08) benign(0.004) TCGA-EE-A20C-06 8 6793615 6793615 C T DEFA4 Missense_Mutation p.R74Q 0.75 tolerated(0.29) benign(0.327) TCGA-EE-A20C-06 8 68973004 68973004 C T PREX2 Silent p.I443I 0.57 TCGA-EE-A20C-06 8 69002860 69002860 C T PREX2 Silent p.I720I 0.43 TCGA-EE-A20C-06 8 69017526 69017526 G A PREX2 Intron 0.72 TCGA-EE-A20C-06 8 69728120 69728120 G A C8orf34 Splice_Site p.X517_splice 0.49 TCGA-EE-A20C-06 8 73848342 73848342 G A KCNB2 Missense_Mutation p.R251Q 0.71 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 8 73849436 73849436 A C KCNB2 Missense_Mutation p.T616P 0.28 tolerated_low_confidence(0.17) benign(0.056) TCGA-EE-A20C-06 8 82606232 82606232 A T SLC10A5 Missense_Mutation p.L326I 0.32 tolerated(0.53) benign(0.126) TCGA-EE-A20C-06 8 87241932 87241932 C T SLC7A13 Missense_Mutation p.R192Q 0.75 deleterious(0.03) benign(0.085) TCGA-EE-A20C-06 8 87645075 87645075 C T CNGB3 Missense_Mutation p.G409S 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 8 87680386 87680386 C T CNGB3 Silent p.T168T 0.32 TCGA-EE-A20C-06 8 92999138 92999138 C T RUNX1T1 Missense_Mutation p.E363K 0.21 deleterious(0) possibly_damaging(0.698) TCGA-EE-A20C-06 8 94934619 94934619 G A PDP1 Missense_Mutation p.G136E 0.65 tolerated(0.25) probably_damaging(0.976) TCGA-EE-A20C-06 8 95186484 95186484 C T CDH17 Silent p.K143K 0.21 TCGA-EE-A20C-06 9 100971427 100971427 C T TBC1D2 Splice_Site p.X558_splice 0.51 TCGA-EE-A20C-06 9 100995812 100995812 G A TBC1D2 Missense_Mutation p.R223C 0.63 tolerated(0.31) benign(0.048) TCGA-EE-A20C-06 9 100995813 100995813 G A TBC1D2 Silent p.I222I 0.63 TCGA-EE-A20C-06 9 101980832 101980832 A G ALG2 Missense_Mutation p.V212A 0.26 tolerated(0.54) benign(0.002) TCGA-EE-A20C-06 9 103102591 103102591 G A TEX10 Missense_Mutation p.P400S 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A20C-06 9 104048505 104048505 C T LPPR1 Silent p.I124I 0.29 TCGA-EE-A20C-06 9 107288793 107288793 C T OR13C4 Missense_Mutation p.G233E 0.32 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A20C-06 9 107288807 107288807 C T OR13C4 Silent p.T228T 0.32 TCGA-EE-A20C-06 9 107521577 107521577 G A NIPSNAP3A Silent p.Q234Q 0.21 TCGA-EE-A20C-06 9 107568554 107568554 G A ABCA1 Missense_Mutation p.P1478S 0.58 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A20C-06 9 113431160 113431160 C T MUSK 5'UTR 0.51 TCGA-EE-A20C-06 9 114090661 114090661 G A OR2K2 Missense_Mutation p.S18F 0.35 deleterious(0.01) benign(0.179) TCGA-EE-A20C-06 9 116045453 116045453 G A PRPF4 Silent p.K175K 0.55 TCGA-EE-A20C-06 9 116060359 116060359 A C RNF183 Missense_Mutation p.F36V 0.65 deleterious(0) possibly_damaging(0.865) TCGA-EE-A20C-06 9 116131975 116131975 C T BSPRY Silent p.F254F 0.70 TCGA-EE-A20C-06 9 116258097 116258097 G C RGS3 Missense_Mutation p.G241R 0.61 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A20C-06 9 117786303 117786303 G A TNC Silent p.N2148N 0.56 TCGA-EE-A20C-06 9 117853079 117853079 C T TNC Silent p.G73G 0.66 TCGA-EE-A20C-06 9 121929335 121929335 G A BRINP1 3'UTR 0.30 TCGA-EE-A20C-06 9 123215755 123215755 G A CDK5RAP2 Silent p.S924S 0.27 TCGA-EE-A20C-06 9 123912507 123912507 C T CNTRL Missense_Mutation p.P1237S 0.47 benign(0.128) TCGA-EE-A20C-06 9 124528840 124528840 C T DAB2IP Missense_Mutation p.P482S 0.50 tolerated(0.05) probably_damaging(0.917) TCGA-EE-A20C-06 9 124528841 124528841 C T DAB2IP Missense_Mutation p.P482L 0.48 deleterious(0.03) benign(0.053) TCGA-EE-A20C-06 9 124534923 124534923 G T DAB2IP Nonsense_Mutation p.E678* 0.59 TCGA-EE-A20C-06 9 124535103 124535103 G A DAB2IP Missense_Mutation p.G738S 0.78 tolerated(0.86) benign(0.01) TCGA-EE-A20C-06 9 124929150 124929150 G C MORN5 Missense_Mutation p.G51R 0.27 deleterious(0.02) possibly_damaging(0.879) TCGA-EE-A20C-06 9 125154475 125154475 G A PTGS1 Silent p.K484K 0.42 TCGA-EE-A20C-06 9 125315497 125315497 A T OR1N2 Nonsense_Mutation p.K17* 0.31 TCGA-EE-A20C-06 9 125316093 125316093 G A OR1N2 Missense_Mutation p.M215I 0.21 tolerated(0.06) probably_damaging(0.977) TCGA-EE-A20C-06 9 125391722 125391722 G A OR1B1 Silent p.F31F 0.17 TCGA-EE-A20C-06 9 125512268 125512268 C T OR1L6 Missense_Mutation p.P48S 0.27 deleterious(0.02) benign(0.001) TCGA-EE-A20C-06 9 127983009 127983009 T C RABEPK Intron 0.60 TCGA-EE-A20C-06 9 128069805 128069805 C T GAPVD1 Silent p.T410T 0.63 TCGA-EE-A20C-06 9 130255173 130255173 C T LRSAM1 Silent p.I532I 0.30 TCGA-EE-A20C-06 9 130913917 130913917 G A LCN2 Silent p.R92R 0.21 TCGA-EE-A20C-06 9 132720823 132720823 C T FNBP1 Missense_Mutation p.D119N 0.77 deleterious(0.04) benign(0.052) TCGA-EE-A20C-06 9 133498141 133498141 G T FUBP3 Missense_Mutation p.G273V 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 9 133498142 133498142 G A FUBP3 Silent p.G273G 0.22 TCGA-EE-A20C-06 9 135275536 135275536 A C TTF1 Missense_Mutation p.S493A 0.65 tolerated(0.15) benign(0.002) TCGA-EE-A20C-06 9 135862081 135862081 C T GFI1B Silent p.L6L 0.55 TCGA-EE-A20C-06 9 135982602 135982602 G A RALGDS Missense_Mutation p.P428L 0.22 deleterious(0.03) unknown(0) TCGA-EE-A20C-06 9 136199027 136199027 C T SURF6 Missense_Mutation p.G255D 0.25 tolerated(0.73) benign(0.014) TCGA-EE-A20C-06 9 136402603 136402603 G A ADAMTSL2 Nonsense_Mutation p.W56* 0.57 TCGA-EE-A20C-06 9 136516836 136516836 G A DBH Silent p.L424L 0.75 TCGA-EE-A20C-06 9 136578194 136578194 T G SARDH Silent p.R401R 0.23 TCGA-EE-A20C-06 9 136594946 136594946 C T SARDH Missense_Mutation p.V286I 0.18 tolerated(0.23) probably_damaging(0.951) TCGA-EE-A20C-06 9 136594947 136594947 C T SARDH Silent p.K285K 0.18 TCGA-EE-A20C-06 9 136637129 136637129 C T VAV2 Silent p.K725K 0.52 TCGA-EE-A20C-06 9 136641194 136641194 G A VAV2 Silent p.I658I 0.33 TCGA-EE-A20C-06 9 137620525 137620525 G A COL5A1 Missense_Mutation p.G266R 0.29 probably_damaging(0.972) TCGA-EE-A20C-06 9 137779318 137779318 T C FCN2 3'UTR 0.73 TCGA-EE-A20C-06 9 138454250 138454250 G A PAEP Silent p.E69E 0.67 TCGA-EE-A20C-06 9 139621229 139621230 - A FAM69B 3'Flank 0.43 TCGA-EE-A20C-06 9 139937428 139937428 G A NPDC1 Silent p.F70F 0.42 TCGA-EE-A20C-06 9 140075310 140075310 G A ANAPC2 Missense_Mutation p.L514F 0.69 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A20C-06 9 140075311 140075311 G A ANAPC2 Silent p.D513D 0.69 TCGA-EE-A20C-06 9 140130597 140130597 G A SLC34A3 Missense_Mutation p.G510E 0.69 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 9 140881234 140881234 G A CACNA1B Silent p.Q634Q 0.63 TCGA-EE-A20C-06 9 140952519 140952519 G A CACNA1B Silent p.V1375V 0.15 TCGA-EE-A20C-06 9 14737436 14737436 C T FREM1 Silent p.R2166R 0.50 TCGA-EE-A20C-06 9 14775852 14775852 C T FREM1 Missense_Mutation p.G1598R 0.51 tolerated(1) benign(0.004) TCGA-EE-A20C-06 9 15469277 15469277 T C PSIP1 Missense_Mutation p.K364R 0.57 tolerated(0.09) probably_damaging(0.992) TCGA-EE-A20C-06 9 18770620 18770620 G A ADAMTSL1 Silent p.G746G 0.75 TCGA-EE-A20C-06 9 19316414 19316414 G A DENND4C Splice_Site p.X496_splice 0.20 TCGA-EE-A20C-06 9 19446396 19446396 C T ACER2 Silent p.F207F 0.66 TCGA-EE-A20C-06 9 2643945 2643945 C T VLDLR Missense_Mutation p.P351L 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A20C-06 9 2717996 2717996 C T KCNV2 Missense_Mutation p.P86L 0.95 tolerated(0.14) benign(0) TCGA-EE-A20C-06 9 32632604 32632604 T A TAF1L Missense_Mutation p.T992S 0.64 tolerated(0.06) benign(0.298) TCGA-EE-A20C-06 9 3266285 3266285 G A RFX3 Nonsense_Mutation p.R460* 0.47 TCGA-EE-A20C-06 9 33038721 33038721 A G DNAJA1 Silent p.K338K 0.52 TCGA-EE-A20C-06 9 33387005 33387005 C T AQP7 Missense_Mutation p.G77E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A20C-06 9 33442215 33442215 G A AQP3 Intron 0.42 TCGA-EE-A20C-06 9 33998810 33998810 G A UBAP2 Missense_Mutation p.S51L 0.28 deleterious(0) possibly_damaging(0.658) TCGA-EE-A20C-06 9 35042221 35042221 C T C9orf131 5'UTR 0.67 TCGA-EE-A20C-06 9 35749889 35749889 G A GBA2 5'Flank 0.31 TCGA-EE-A20C-06 9 35906712 35906712 C T HRCT1 3'UTR 0.52 TCGA-EE-A20C-06 9 35906713 35906713 C T HRCT1 3'UTR 0.52 TCGA-EE-A20C-06 9 35957264 35957264 C T OR2S2 Missense_Mutation p.D278N 0.40 deleterious(0.01) benign(0.424) TCGA-EE-A20C-06 9 38411434 38411434 C T IGFBPL1 Missense_Mutation p.R267K 0.61 tolerated(1) benign(0.001) TCGA-EE-A20C-06 9 3898796 3898796 C T GLIS3 Missense_Mutation p.D675N 0.68 deleterious(0.02) possibly_damaging(0.624) TCGA-EE-A20C-06 9 43627778 43627778 G A SPATA31A6 Silent p.S303S 0.32 TCGA-EE-A20C-06 9 4622493 4622493 G A SPATA6L Silent p.P171P 0.21 TCGA-EE-A20C-06 9 4622494 4622494 G A SPATA6L Missense_Mutation p.P171L 0.21 deleterious(0) probably_damaging(0.991) TCGA-EE-A20C-06 9 71623393 71623393 G A PIP5K1B 3'UTR 0.31 TCGA-EE-A20C-06 9 72785526 72785526 G A MAMDC2 Missense_Mutation p.G544R 0.32 deleterious(0) possibly_damaging(0.661) TCGA-EE-A20C-06 9 74344822 74344822 G A TMEM2 Missense_Mutation p.S663L 0.52 deleterious(0) probably_damaging(0.937) TCGA-EE-A20C-06 9 74349902 74349902 G A TMEM2 Missense_Mutation p.L405F 0.51 tolerated(0.71) benign(0.001) TCGA-EE-A20C-06 9 74856136 74856136 C T GDA Missense_Mutation p.L353F 0.39 deleterious(0.05) possibly_damaging(0.504) TCGA-EE-A20C-06 9 78547381 78547381 C T PCSK5 Silent p.F93F 0.86 TCGA-EE-A20C-06 9 78711007 78711007 G A PCSK5 Missense_Mutation p.D366N 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20C-06 9 78794539 78794539 T C PCSK5 Missense_Mutation p.V643A 0.37 tolerated(0.58) probably_damaging(0.965) TCGA-EE-A20C-06 9 79324615 79324615 C T PRUNE2 Missense_Mutation p.E859K 0.74 tolerated(0.05) benign(0.231) TCGA-EE-A20C-06 9 80881578 80881578 C G CEP78 Missense_Mutation p.S690C 0.73 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-EE-A20C-06 9 80881579 80881579 C T CEP78 Silent p.S690S 0.73 TCGA-EE-A20C-06 9 84208114 84208114 G A TLE1 Silent p.P469P 0.30 TCGA-EE-A20C-06 9 8521432 8521432 C T PTPRD Nonsense_Mutation p.W269* 0.11 TCGA-EE-A20C-06 9 86893221 86893221 C T SLC28A3 Missense_Mutation p.G663E 0.66 tolerated(0.17) benign(0.077) TCGA-EE-A20C-06 9 88257852 88257852 C T AGTPBP1 Missense_Mutation p.D358N 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A20C-06 9 91652975 91652975 G A SHC3 Missense_Mutation p.S530F 0.67 deleterious(0) probably_damaging(0.988) TCGA-EE-A20C-06 9 916865 916865 A C DMRT1 Missense_Mutation p.T309P 0.22 deleterious(0.02) benign(0.033) TCGA-EE-A20C-06 9 91961818 91961818 C T SECISBP2 Missense_Mutation p.S486F 0.59 deleterious(0) probably_damaging(0.954) TCGA-EE-A20C-06 9 91994478 91994478 G A SEMA4D Missense_Mutation p.S577F 0.18 tolerated(0.72) benign(0.013) TCGA-EE-A20C-06 9 95003199 95003199 G A IARS Silent p.S1074S 0.28 TCGA-EE-A20C-06 9 96024151 96024151 C T WNK2 Missense_Mutation p.T1041I 0.23 unknown(0) TCGA-EE-A20C-06 9 96437289 96437289 C T PHF2 Missense_Mutation p.P903S 0.42 deleterious(0) unknown(0) TCGA-EE-A20C-06 9 96437290 96437290 C T PHF2 Missense_Mutation p.P903L 0.45 deleterious(0) unknown(0) TCGA-EE-A20C-06 9 96715078 96715078 G A BARX1 Missense_Mutation p.S178F 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A20C-06 9 990186 990186 G A DMRT3 Silent p.V200V 0.12 TCGA-EE-A20C-06 9 990187 990187 G A DMRT3 Missense_Mutation p.E201K 0.12 tolerated(0.15) benign(0.001) TCGA-EE-A20C-06 9 990288 990288 C T DMRT3 Silent p.G234G 0.59 TCGA-EE-A20C-06 9 991055 991055 C T DMRT3 3'UTR 0.64 TCGA-EE-A20C-06 9 99413700 99413700 C T AAED1 Missense_Mutation p.M131I 0.21 deleterious(0.02) possibly_damaging(0.685) TCGA-EE-A20C-06 9 99581682 99581682 A G ZNF782 Missense_Mutation p.I208T 0.26 tolerated(0.07) benign(0.241) TCGA-EE-A20C-06 X 100349736 100349736 T C TMEM35 Silent p.L99L 1.00 TCGA-EE-A20C-06 X 105875872 105875872 C T CXorf57 Nonsense_Mutation p.R333* 1.00 TCGA-EE-A20C-06 X 105876182 105876182 C T CXorf57 Missense_Mutation p.P370L 0.98 deleterious(0) possibly_damaging(0.898) TCGA-EE-A20C-06 X 110951286 110951286 A G ALG13 Missense_Mutation p.I139V 1.00 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A20C-06 X 111698717 111698717 A T ZCCHC16 Missense_Mutation p.K254I 0.95 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A20C-06 X 114953452 114953452 T C RP1-241P17.4 Missense_Mutation p.K33R 0.85 tolerated(0.1) possibly_damaging(0.856) TCGA-EE-A20C-06 X 115304184 115304184 C T AGTR2 Silent p.I217I 0.92 TCGA-EE-A20C-06 X 115592874 115592874 G A CT83 3'UTR 0.94 TCGA-EE-A20C-06 X 119410865 119410865 C T TMEM255A Missense_Mutation p.D208N 0.91 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20C-06 X 120008779 120008779 G A CT47B1 Missense_Mutation p.P249L 0.97 deleterious(0) unknown(0) TCGA-EE-A20C-06 X 122318324 122318324 C T GRIA3 5'UTR 1.00 TCGA-EE-A20C-06 X 12904964 12904964 C - TLR7 Frame_Shift_Del p.S446* 0.53 TCGA-EE-A20C-06 X 12939771 12939771 G A TLR8 Missense_Mutation p.R871K 1.00 tolerated(0.29) benign(0.006) TCGA-EE-A20C-06 X 130408770 130408770 C T IGSF1 Missense_Mutation p.G1190E 0.99 deleterious(0.01) probably_damaging(1) TCGA-EE-A20C-06 X 135428274 135428274 A T GPR112 Missense_Mutation p.E803D 1.00 tolerated(0.07) benign(0.004) TCGA-EE-A20C-06 X 138901537 138901537 C T ATP11C Missense_Mutation p.R69K 0.96 deleterious(0) probably_damaging(0.989) TCGA-EE-A20C-06 X 139866501 139866501 C T CDR1 Missense_Mutation p.E11K 0.93 tolerated(0.05) possibly_damaging(0.486) TCGA-EE-A20C-06 X 140984387 140984387 C T MAGEC3 Intron 0.94 TCGA-EE-A20C-06 X 1477780 1477780 G A IL3RA Silent p.Q253Q 0.42 TCGA-EE-A20C-06 X 148568501 148568501 G A IDS Missense_Mutation p.P168S 1.00 tolerated(0.09) benign(0.257) TCGA-EE-A20C-06 X 150908125 150908125 C T CNGA2 Missense_Mutation p.R99C 0.89 deleterious(0.04) benign(0.006) TCGA-EE-A20C-06 X 151821286 151821286 G A GABRQ Missense_Mutation p.E481K 0.95 tolerated(0.46) benign(0.008) TCGA-EE-A20C-06 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.93 TCGA-EE-A20C-06 X 153073942 153073942 G T PDZD4 Silent p.R57R 1.00 TCGA-EE-A20C-06 X 153073943 153073943 G A PDZD4 Silent p.L56L 1.00 TCGA-EE-A20C-06 X 153628953 153628953 C T RPL10 Missense_Mutation p.P160S 0.96 tolerated(0.05) possibly_damaging(0.535) TCGA-EE-A20C-06 X 154132587 154132587 C T F8 Silent p.E1933E 0.93 TCGA-EE-A20C-06 X 154159290 154159290 G A F8 Silent p.P925P 1.00 TCGA-EE-A20C-06 X 1584801 1584801 G A P2RY8 Silent p.I217I 0.38 TCGA-EE-A20C-06 X 1585081 1585081 C T P2RY8 Missense_Mutation p.G124E 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A20C-06 X 1585082 1585082 C T P2RY8 Missense_Mutation p.G124R 0.38 deleterious(0) probably_damaging(0.969) TCGA-EE-A20C-06 X 18674775 18674775 G A RS1 Missense_Mutation p.P61L 1.00 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A20C-06 X 2406848 2406848 G A ZBED1 Missense_Mutation p.P638L 0.46 deleterious(0) probably_damaging(0.993) TCGA-EE-A20C-06 X 2931089 2931089 G A ARSH Silent p.G72G 0.93 TCGA-EE-A20C-06 X 2942157 2942157 G A ARSH Missense_Mutation p.G333R 0.96 tolerated(0.09) benign(0.159) TCGA-EE-A20C-06 X 3021880 3021880 G A ARSF Missense_Mutation p.G394R 0.90 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A20C-06 X 3235955 3235955 G A MXRA5 Nonsense_Mutation p.R1923* 1.00 TCGA-EE-A20C-06 X 3239541 3239541 T A MXRA5 Silent p.I1395I 0.94 TCGA-EE-A20C-06 X 34148258 34148258 G A FAM47A Missense_Mutation p.P713L 0.96 deleterious(0) probably_damaging(0.991) TCGA-EE-A20C-06 X 34148259 34148259 G A FAM47A Missense_Mutation p.P713S 0.96 deleterious(0) probably_damaging(0.986) TCGA-EE-A20C-06 X 34150161 34150161 G A FAM47A Missense_Mutation p.P79S 1.00 deleterious(0) probably_damaging(0.986) TCGA-EE-A20C-06 X 35974119 35974119 G A CXorf22 Missense_Mutation p.G406R 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 X 35974120 35974120 G A CXorf22 Missense_Mutation p.G406E 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 X 37029226 37029226 G A FAM47C Missense_Mutation p.E915K 0.90 tolerated(0.3) benign(0.013) TCGA-EE-A20C-06 X 37312578 37312578 C T PRRG1 Missense_Mutation p.P121S 0.93 tolerated(0.55) benign(0.011) TCGA-EE-A20C-06 X 41586559 41586559 C T GPR82 Silent p.L94L 0.95 TCGA-EE-A20C-06 X 43626655 43626655 C T MAOB 3'UTR 0.92 TCGA-EE-A20C-06 X 48772546 48772546 G A PIM2 Missense_Mutation p.L116F 1.00 tolerated(0.07) benign(0.338) TCGA-EE-A20C-06 X 49071939 49071939 C T CACNA1F Missense_Mutation p.E1112K 1.00 tolerated(0.07) possibly_damaging(0.458) TCGA-EE-A20C-06 X 49071940 49071940 C T CACNA1F Silent p.V1111V 1.00 TCGA-EE-A20C-06 X 49143444 49143444 C T PPP1R3F Silent p.T764T 0.94 TCGA-EE-A20C-06 X 50085299 50085299 C A CCNB3 Silent p.L1205L 0.93 TCGA-EE-A20C-06 X 50111971 50111971 C T DGKK RNA 0.89 TCGA-EE-A20C-06 X 50659393 50659393 G A BMP15 Missense_Mutation p.G322E 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A20C-06 X 54978457 54978457 A G PFKFB1 Missense_Mutation p.Y243H 1.00 probably_damaging(1) TCGA-EE-A20C-06 X 63406075 63406075 G A AMER1 3'UTR 0.95 TCGA-EE-A20C-06 X 64139034 64139034 G A ZC4H2 Missense_Mutation p.P150L 0.81 tolerated(0.19) benign(0.188) TCGA-EE-A20C-06 X 64708988 64708988 G C ZC3H12B Missense_Mutation p.D103H 0.92 deleterious(0) possibly_damaging(0.535) TCGA-EE-A20C-06 X 64734821 64734821 G C LAS1L Missense_Mutation p.R654G 0.95 deleterious(0.01) possibly_damaging(0.469) TCGA-EE-A20C-06 X 68382407 68382407 C T PJA1 Silent p.R225R 0.91 TCGA-EE-A20C-06 X 70783276 70783276 A G OGT Missense_Mutation p.E788G 0.88 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A20C-06 X 71360303 71360303 G A NHSL2 Missense_Mutation p.G969R 1.00 deleterious(0.04) possibly_damaging(0.813) TCGA-EE-A20C-06 X 72433251 72433251 T C NAP1L2 Missense_Mutation p.T360A 0.91 deleterious(0.01) possibly_damaging(0.682) TCGA-EE-A20C-06 X 84363471 84363471 C T SATL1 Missense_Mutation p.M168I 0.95 tolerated(0.22) benign(0) TCGA-EE-A20C-06 X 88008632 88008632 G A CPXCR1 Missense_Mutation p.E73K 1.00 deleterious(0.02) possibly_damaging(0.81) TCGA-EE-A20C-06 X 92927628 92927628 C T NAP1L3 Missense_Mutation p.E226K 0.51 deleterious_low_confidence(0.05) possibly_damaging(0.621) TCGA-EE-A20C-06 X 99854715 99854715 T C TNMD 3'UTR 0.86 TCGA-EE-A20C-06 Y 16953061 16953061 G A NLGN4Y Silent p.Q790Q 0.40 TCGA-EE-A20C-06 Y 4925489 4925489 G A PCDH11Y Missense_Mutation p.E209K 0.90 deleterious(0.05) benign(0.013) TCGA-EE-A20F-06 10 106974277 106974277 G A SORCS3 Missense_Mutation p.G818E 0.35 tolerated(1) possibly_damaging(0.552) TCGA-EE-A20F-06 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A20F-06 10 124605381 124605381 C T CUZD1 5'UTR 0.47 TCGA-EE-A20F-06 10 125771987 125771987 G A CHST15 Nonsense_Mutation p.Q453* 0.54 TCGA-EE-A20F-06 10 126490351 126490351 G A FAM175B 5'Flank 0.40 TCGA-EE-A20F-06 10 134161627 134161627 T A LRRC27 Missense_Mutation p.F231L 0.67 tolerated(0.05) possibly_damaging(0.827) TCGA-EE-A20F-06 10 15255701 15255701 G A FAM171A1 Missense_Mutation p.P629L 0.30 deleterious(0.01) benign(0.375) TCGA-EE-A20F-06 10 15649789 15649789 C T ITGA8 Missense_Mutation p.G551R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 10 16562520 16562520 C T C1QL3 Missense_Mutation p.G182E 0.50 deleterious(0) probably_damaging(0.978) TCGA-EE-A20F-06 10 26457684 26457684 G A MYO3A Missense_Mutation p.R1052Q 0.41 tolerated(0.18) benign(0.115) TCGA-EE-A20F-06 10 26790131 26790131 G A APBB1IP Intron 0.33 TCGA-EE-A20F-06 10 28151551 28151551 C T ARMC4 Missense_Mutation p.D871N 0.35 tolerated(0.08) benign(0.12) TCGA-EE-A20F-06 10 29759209 29759209 C T SVIL Missense_Mutation p.E1947K 0.32 deleterious(0.02) possibly_damaging(0.721) TCGA-EE-A20F-06 10 31134453 31134453 C T ZNF438 Missense_Mutation p.E642K 0.29 deleterious(0.05) benign(0.067) TCGA-EE-A20F-06 10 37418873 37418873 C T ANKRD30A Silent p.L36L 0.30 TCGA-EE-A20F-06 10 3824190 3824191 - TG KLF6 Frame_Shift_Ins p.D107Qfs*35 0.33 TCGA-EE-A20F-06 10 43882742 43882742 G A HNRNPF Silent p.P197P 0.40 TCGA-EE-A20F-06 10 44868769 44868769 G A CXCL12 3'Flank 0.27 TCGA-EE-A20F-06 10 5203886 5203886 C T AKR1CL1 Missense_Mutation p.R104K 0.32 tolerated(0.97) benign(0.004) TCGA-EE-A20F-06 10 52566490 52566490 C T A1CF Silent p.%3D 0.23 TCGA-EE-A20F-06 10 55583013 55583013 C T PCDH15 Silent p.E1493E 0.56 TCGA-EE-A20F-06 10 55945005 55945005 A T PCDH15 Silent p.L443L 0.46 TCGA-EE-A20F-06 10 61832871 61832871 C T ANK3 Missense_Mutation p.E2590K 0.53 probably_damaging(0.956) TCGA-EE-A20F-06 10 61865804 61865804 C T ANK3 Missense_Mutation p.E1063K 0.38 probably_damaging(1) TCGA-EE-A20F-06 10 69682538 69682538 T A HERC4 3'UTR 0.45 TCGA-EE-A20F-06 10 96707585 96707585 G A CYP2C9 Silent p.V177V 0.44 TCGA-EE-A20F-06 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.17 tolerated(0.42) possibly_damaging(0.633) TCGA-EE-A20F-06 11 105782725 105782725 C T GRIA4 Intron 0.39 TCGA-EE-A20F-06 11 105789553 105789553 A G GRIA4 Missense_Mutation p.Y462C 0.29 deleterious(0.01) possibly_damaging(0.855) TCGA-EE-A20F-06 11 117988150 117988150 G A TMPRSS4 Nonsense_Mutation p.W428* 0.45 TCGA-EE-A20F-06 11 121429474 121429474 C T SORL1 Silent p.I946I 0.56 TCGA-EE-A20F-06 11 121495950 121495950 G A SORL1 Missense_Mutation p.E2110K 0.58 tolerated(0.08) possibly_damaging(0.593) TCGA-EE-A20F-06 11 12316175 12316175 C T MICALCL Silent p.S399S 0.32 TCGA-EE-A20F-06 11 124121107 124121107 C T OR8G1 Missense_Mutation p.R229C 0.49 tolerated_low_confidence(0.1) possibly_damaging(0.888) TCGA-EE-A20F-06 11 128781414 128781414 G A KCNJ5 Silent p.V82V 0.39 TCGA-EE-A20F-06 11 134238634 134238634 C T GLB1L2 Missense_Mutation p.A329V 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 11 17409006 17409006 G A KCNJ11 Silent p.I211I 0.35 TCGA-EE-A20F-06 11 18610251 18610251 C T UEVLD 5'Flank 0.50 TCGA-EE-A20F-06 11 18655841 18655841 G A SPTY2D1 5'UTR 0.33 TCGA-EE-A20F-06 11 18736059 18736059 C T IGSF22 Silent p.K548K 0.31 TCGA-EE-A20F-06 11 27149085 27149085 G T BBOX1 3'UTR 0.29 TCGA-EE-A20F-06 11 3427736 3427736 G A TSSC2 RNA 0.26 TCGA-EE-A20F-06 11 399048 399048 G A PKP3 Silent p.Q375Q 0.35 TCGA-EE-A20F-06 11 40136274 40136274 C T LRRC4C Missense_Mutation p.M523I 0.26 tolerated(0.06) benign(0.443) TCGA-EE-A20F-06 11 4703390 4703390 C T OR51E2 Missense_Mutation p.M184I 0.29 tolerated(0.11) probably_damaging(0.989) TCGA-EE-A20F-06 11 47283441 47283441 C T NR1H3 Intron 0.22 TCGA-EE-A20F-06 11 47496921 47496921 G A CELF1 Nonsense_Mutation p.Q412* 0.32 TCGA-EE-A20F-06 11 48328418 48328418 C T OR4S1 Missense_Mutation p.S215F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 11 48510813 48510813 C T OR4A47 Nonsense_Mutation p.Q157* 0.33 TCGA-EE-A20F-06 11 4945255 4945255 G A OR51G1 Silent p.F105F 0.41 TCGA-EE-A20F-06 11 4967799 4967799 G A OR51A4 Missense_Mutation p.H178Y 0.20 deleterious(0.05) benign(0.35) TCGA-EE-A20F-06 11 4968009 4968009 C T OR51A4 Missense_Mutation p.G108R 0.16 tolerated(0.25) benign(0.141) TCGA-EE-A20F-06 11 55032382 55032382 G A TRIM48 Missense_Mutation p.M17I 0.33 deleterious(0.03) possibly_damaging(0.614) TCGA-EE-A20F-06 11 55371012 55371012 G A OR4C11 Missense_Mutation p.L280F 0.31 deleterious(0.05) benign(0.157) TCGA-EE-A20F-06 11 55655644 55655644 G A TRIM51 Missense_Mutation p.S215N 0.26 deleterious(0.02) benign(0.061) TCGA-EE-A20F-06 11 55890100 55890100 G A OR8H3 Silent p.A84A 0.35 TCGA-EE-A20F-06 11 55944581 55944581 T G OR5J2 Missense_Mutation p.L163W 0.31 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A20F-06 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.34 deleterious(0.02) benign(0.181) TCGA-EE-A20F-06 11 56086283 56086283 C T OR8K3 Silent p.S167S 0.31 TCGA-EE-A20F-06 11 56756748 56756748 G A OR5AK2 Silent p.V120V 0.36 TCGA-EE-A20F-06 11 5730961 5730961 G A TRIM22 3'UTR 0.33 TCGA-EE-A20F-06 11 5809912 5809912 G A OR52N1 Silent p.F45F 0.24 TCGA-EE-A20F-06 11 58601987 58601987 C T GLYATL2 Missense_Mutation p.S267N 0.30 tolerated(0.31) benign(0.037) TCGA-EE-A20F-06 11 62298301 62298301 G A AHNAK Silent p.S1196S 0.31 TCGA-EE-A20F-06 11 63066392 63066392 G T SLC22A10 Missense_Mutation p.R277S 0.22 tolerated(0.12) benign(0.196) TCGA-EE-A20F-06 11 63149731 63149731 C T SLC22A9 Missense_Mutation p.S352F 0.29 tolerated(0.19) benign(0.001) TCGA-EE-A20F-06 11 63283175 63283175 G A LGALS12 Missense_Mutation p.R286K 0.26 tolerated(0.3) probably_damaging(0.999) TCGA-EE-A20F-06 11 64323543 64323543 C T SLC22A11 Silent p.F24F 0.22 TCGA-EE-A20F-06 11 70265886 70265886 C T CTTN Silent p.I201I 0.28 TCGA-EE-A20F-06 11 71293730 71293730 A T KRTAP5-11 Missense_Mutation p.C52S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A20F-06 11 76877112 76877112 G A MYO7A Silent p.E567E 0.53 TCGA-EE-A20F-06 11 78369443 78369443 T A TENM4 Missense_Mutation p.N2657I 0.27 deleterious(0) benign(0.299) TCGA-EE-A20F-06 11 8728700 8728700 C T ST5 Missense_Mutation p.E835K 0.30 deleterious(0) benign(0.336) TCGA-EE-A20F-06 11 92531315 92531315 G A FAT3 Silent p.G1712G 0.54 TCGA-EE-A20F-06 12 103288533 103288533 C T PAH Missense_Mutation p.R111Q 0.30 tolerated(0.15) possibly_damaging(0.459) TCGA-EE-A20F-06 12 106633846 106633846 G A CKAP4 Silent p.F255F 0.35 TCGA-EE-A20F-06 12 111779843 111779843 G T CUX2 Missense_Mutation p.W1215C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 12 112667565 112667565 G A HECTD4 Silent p.A2006A 0.35 TCGA-EE-A20F-06 12 113314479 113314479 C T RPH3A Missense_Mutation p.P327S 0.31 tolerated(0.33) benign(0.001) TCGA-EE-A20F-06 12 120615493 120615493 G A GCN1L1 Silent p.Y241Y 0.31 TCGA-EE-A20F-06 12 123489030 123489030 G A PITPNM2 Missense_Mutation p.P320L 0.36 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A20F-06 12 125834343 125834343 G A TMEM132B Missense_Mutation p.R133K 0.38 tolerated(0.45) benign(0.027) TCGA-EE-A20F-06 12 130907064 130907064 C T RIMBP2 Missense_Mutation p.G802S 0.50 tolerated(0.08) benign(0.056) TCGA-EE-A20F-06 12 132395278 132395278 C T ULK1 Missense_Mutation p.S294L 0.27 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A20F-06 12 21036537 21036537 G A SLCO1B3 Splice_Site p.X561_splice 0.30 TCGA-EE-A20F-06 12 2774812 2774812 C T CACNA1C Silent p.I1536I 0.22 TCGA-EE-A20F-06 12 32530571 32530571 C G BICD1 3'UTR 0.23 TCGA-EE-A20F-06 12 48962890 48962890 C T LALBA Silent p.R89R 0.28 TCGA-EE-A20F-06 12 49416416 49416416 C T KMT2D Missense_Mutation p.R5432Q 0.35 unknown(0) TCGA-EE-A20F-06 12 49723209 49723209 C T TROAP Missense_Mutation p.S379F 0.29 deleterious(0) possibly_damaging(0.661) TCGA-EE-A20F-06 12 51847358 51847358 G A SLC4A8 Missense_Mutation p.G150E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 12 51868160 51868160 C T SLC4A8 Missense_Mutation p.H647Y 0.29 tolerated(0.06) benign(0.212) TCGA-EE-A20F-06 12 52470968 52470968 C T C12orf44 Silent p.A217A 0.21 TCGA-EE-A20F-06 12 52779191 52779191 G A KRT84 Missense_Mutation p.S60L 0.44 deleterious(0.04) probably_damaging(0.953) TCGA-EE-A20F-06 12 53715136 53715136 G A AAAS Silent p.F38F 0.30 TCGA-EE-A20F-06 12 64588117 64588117 C T C12orf66 Silent p.T281T 0.32 TCGA-EE-A20F-06 12 7649645 7649645 C T CD163 Missense_Mutation p.G288E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 12 80672878 80672878 C T OTOGL Nonsense_Mutation p.R945* 0.32 TCGA-EE-A20F-06 12 81719572 81719572 G A PPFIA2 Nonsense_Mutation p.R876* 0.30 TCGA-EE-A20F-06 12 86199417 86199417 G A RASSF9 Missense_Mutation p.P124L 0.34 deleterious(0.01) possibly_damaging(0.454) TCGA-EE-A20F-06 12 9262530 9262530 G A A2M Silent p.S202S 0.34 TCGA-EE-A20F-06 12 96356195 96356195 C T AMDHD1 Silent p.I292I 0.32 TCGA-EE-A20F-06 13 100517131 100517131 C T CLYBL Silent p.V200V 0.38 TCGA-EE-A20F-06 13 103514777 103514777 G A BIVM-ERCC5 Silent p.E852E 0.33 TCGA-EE-A20F-06 13 103703783 103703783 C T SLC10A2 Splice_Site p.X196_splice 0.39 TCGA-EE-A20F-06 13 109379923 109379923 C T MYO16 Missense_Mutation p.L145F 0.41 deleterious(0.03) probably_damaging(1) TCGA-EE-A20F-06 13 110828846 110828846 G A COL4A1 Missense_Mutation p.P995S 0.30 benign(0.428) TCGA-EE-A20F-06 13 114083342 114083342 G A ADPRHL1 Nonsense_Mutation p.Q191* 0.53 TCGA-EE-A20F-06 13 28866537 28866538 - A PAN3 Frame_Shift_Ins p.I850Nfs*8 0.11 TCGA-EE-A20F-06 13 29933429 29933429 G A MTUS2 Missense_Mutation p.R989Q 0.31 deleterious(0.03) benign(0.07) TCGA-EE-A20F-06 13 32841395 32841395 G A FRY Missense_Mutation p.D2679N 0.46 tolerated(0.08) benign(0.013) TCGA-EE-A20F-06 13 39265881 39265881 G T FREM2 Missense_Mutation p.G1467V 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 13 74420329 74420329 G A KLF12 Missense_Mutation p.S102F 0.42 tolerated(0.19) possibly_damaging(0.641) TCGA-EE-A20F-06 13 84454642 84454642 G A SLITRK1 Missense_Mutation p.P334L 0.35 deleterious(0.01) benign(0.002) TCGA-EE-A20F-06 13 96293641 96293641 C T DZIP1 Missense_Mutation p.E169K 0.41 deleterious(0) possibly_damaging(0.686) TCGA-EE-A20F-06 13 96508564 96508564 C T UGGT2 Missense_Mutation p.G1286R 0.11 deleterious(0) probably_damaging(0.973) TCGA-EE-A20F-06 14 100182186 100182186 G A CYP46A1 Missense_Mutation p.E245K 0.28 tolerated(0.15) benign(0.005) TCGA-EE-A20F-06 14 105213306 105213306 G T ADSSL1 Missense_Mutation p.G490V 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 14 105410901 105410901 C T AHNAK2 Silent p.K3629K 0.29 TCGA-EE-A20F-06 14 106053566 106053566 G A IGHA2 Missense_Mutation p.P244L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 14 106174821 106174821 C T IGHA1 Missense_Mutation p.G61E 0.21 deleterious(0.01) benign(0.179) TCGA-EE-A20F-06 14 106236839 106236839 G A IGHG3 Missense_Mutation p.P124S 0.32 tolerated(0.74) benign(0) TCGA-EE-A20F-06 14 106791139 106791139 C T IGHV3-30 Missense_Mutation p.D73N 0.11 tolerated_low_confidence(0.27) benign(0.109) TCGA-EE-A20F-06 14 19377629 19377629 G A OR11H12 Missense_Mutation p.M12I 0.23 deleterious(0.02) benign(0.291) TCGA-EE-A20F-06 14 20482945 20482945 C T OR4K14 Silent p.L136L 0.25 TCGA-EE-A20F-06 14 20585694 20585694 C T OR4K17 Silent p.F43F 0.37 TCGA-EE-A20F-06 14 22280042 22280042 G A TRAV9-1 Silent p.R77R 0.13 TCGA-EE-A20F-06 14 24528491 24528491 C T LRRC16B Silent p.L547L 0.25 TCGA-EE-A20F-06 14 24659650 24659650 G A TM9SF1 Missense_Mutation p.P455S 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A20F-06 14 25042826 25042826 C T CTSG 3'UTR 0.25 TCGA-EE-A20F-06 14 26917454 26917454 C T NOVA1 Missense_Mutation p.G412E 0.36 tolerated(0.08) possibly_damaging(0.754) TCGA-EE-A20F-06 14 31583155 31583155 G A HECTD1 Silent p.H1928H 0.28 TCGA-EE-A20F-06 14 38064108 38064108 C T FOXA1 Missense_Mutation p.E24K 0.32 deleterious(0) possibly_damaging(0.547) TCGA-EE-A20F-06 14 51107545 51107545 G A SAV1 Silent p.S291S 0.38 TCGA-EE-A20F-06 14 51224102 51224102 G A NIN Nonsense_Mutation p.R1216* 0.33 TCGA-EE-A20F-06 14 52735365 52735365 C T PTGDR Missense_Mutation p.S278F 0.39 deleterious(0.04) benign(0.272) TCGA-EE-A20F-06 14 57268674 57268674 C T OTX2 Missense_Mutation p.A225T 0.26 tolerated(0.62) benign(0.002) TCGA-EE-A20F-06 14 71576565 71576565 C T PCNX Silent p.I2313I 0.28 TCGA-EE-A20F-06 14 74874253 74874253 C T SYNDIG1L Silent p.Q234Q 0.22 TCGA-EE-A20F-06 14 91059907 91059907 G A TTC7B Missense_Mutation p.S677L 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A20F-06 14 93118768 93118768 C T RIN3 Silent p.V458V 0.48 TCGA-EE-A20F-06 14 94067104 94067104 C T UNC79 Missense_Mutation p.P1011S 0.20 tolerated(0.36) probably_damaging(0.999) TCGA-EE-A20F-06 14 95030163 95030163 C T SERPINA4 Missense_Mutation p.S115F 0.26 tolerated(0.16) benign(0.024) TCGA-EE-A20F-06 14 96775866 96775866 T C ATG2B Silent p.L1409L 0.31 TCGA-EE-A20F-06 15 100692897 100692897 G A ADAMTS17 Silent p.L465L 0.45 TCGA-EE-A20F-06 15 23811327 23811327 C T MKRN3 Missense_Mutation p.S133L 0.30 tolerated(0.68) benign(0.002) TCGA-EE-A20F-06 15 25330440 25330440 C T SNORD116-18 5'Flank 0.43 TCGA-EE-A20F-06 15 25494411 25494411 G A SNORD115-43 RNA 0.31 TCGA-EE-A20F-06 15 28358292 28358292 G A HERC2 Silent p.F4719F 0.20 TCGA-EE-A20F-06 15 33928631 33928631 G A RYR3 Missense_Mutation p.D1146N 0.35 probably_damaging(1) TCGA-EE-A20F-06 15 38808488 38808488 C T RASGRP1 Silent p.R195R 0.24 TCGA-EE-A20F-06 15 40564469 40564469 C T PAK6 Silent p.S301S 0.30 TCGA-EE-A20F-06 15 42452984 42452984 A C VPS39 Missense_Mutation p.C866G 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 15 43500531 43500531 C T EPB42 Nonsense_Mutation p.W354* 0.22 TCGA-EE-A20F-06 15 43817529 43817529 G A MAP1A Silent p.R1286R 0.35 TCGA-EE-A20F-06 15 54556412 54556412 G A UNC13C Silent p.Q1165Q 0.41 TCGA-EE-A20F-06 15 54556488 54556488 G A UNC13C Missense_Mutation p.E1191K 0.67 tolerated_low_confidence(0.09) probably_damaging(0.946) TCGA-EE-A20F-06 15 54919201 54919201 G A UNC13C Missense_Mutation p.E2179K 0.18 deleterious_low_confidence(0) benign(0.113) TCGA-EE-A20F-06 15 66262995 66262995 C T MEGF11 Silent p.G265G 0.25 TCGA-EE-A20F-06 15 68987586 68987586 G A CORO2B Silent p.E108E 0.31 TCGA-EE-A20F-06 15 69339775 69339775 G A NOX5 Missense_Mutation p.G572E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 15 72534509 72534509 G A PARP6 Missense_Mutation p.A565V 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 15 73615254 73615254 G A HCN4 Silent p.P1060P 0.64 TCGA-EE-A20F-06 15 74468452 74468452 G A ISLR Missense_Mutation p.S418N 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-EE-A20F-06 15 74573098 74573098 G A CCDC33 Missense_Mutation p.G327R 0.34 deleterious(0.04) probably_damaging(0.991) TCGA-EE-A20F-06 15 74948373 74948373 G A EDC3 Missense_Mutation p.P174L 0.37 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A20F-06 15 77450995 77450995 G A PEAK1 Missense_Mutation p.P1061S 0.15 deleterious(0.04) benign(0.014) TCGA-EE-A20F-06 15 77471633 77471633 G A PEAK1 Missense_Mutation p.P879L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 15 79224718 79224718 G A CTSH Missense_Mutation p.S163F 0.30 tolerated(0.08) benign(0.032) TCGA-EE-A20F-06 15 82444623 82444623 A C EFTUD1 Missense_Mutation p.D724E 0.33 tolerated(0.59) benign(0.003) TCGA-EE-A20F-06 16 10274210 10274210 C T GRIN2A Missense_Mutation p.G20D 0.38 deleterious_low_confidence(0.02) benign(0.025) TCGA-EE-A20F-06 16 10721397 10721397 T A TEKT5 3'UTR 0.36 TCGA-EE-A20F-06 16 14042072 14042072 C T ERCC4 Silent p.I873I 0.29 TCGA-EE-A20F-06 16 1652443 1652443 G A IFT140 Silent p.P99P 0.30 TCGA-EE-A20F-06 16 18839436 18839436 G C SMG1 Missense_Mutation p.P3220A 0.23 tolerated(0.28) benign(0.007) TCGA-EE-A20F-06 16 19490759 19490759 G A TMC5 Missense_Mutation p.E726K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 16 20043535 20043535 G A GPR139 Missense_Mutation p.P195L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 16 20471479 20471479 G A ACSM2A Missense_Mutation p.G15S 0.32 tolerated(0.31) benign(0.064) TCGA-EE-A20F-06 16 2070553 2070553 C T NPW Missense_Mutation p.S144F 0.44 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A20F-06 16 20975472 20975472 A G DNAH3 Missense_Mutation p.V3245A 0.32 deleterious(0) possibly_damaging(0.856) TCGA-EE-A20F-06 16 22826360 22826360 G A HS3ST2 Silent p.L143L 0.26 TCGA-EE-A20F-06 16 23079890 23079890 G A USP31 Missense_Mutation p.P1179L 0.43 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A20F-06 16 2493771 2493771 C T CCNF Missense_Mutation p.S300F 0.33 deleterious(0.01) benign(0.255) TCGA-EE-A20F-06 16 25251385 25251385 G A ZKSCAN2 Missense_Mutation p.P886S 0.34 deleterious(0) possibly_damaging(0.716) TCGA-EE-A20F-06 16 2810467 2810467 C T SRRM2 Silent p.S333S 0.33 TCGA-EE-A20F-06 16 338172 338172 G A AXIN1 Silent p.L847L 0.27 TCGA-EE-A20F-06 16 4242032 4242032 C T SRL 3'UTR 0.35 TCGA-EE-A20F-06 16 4794906 4794906 G A C16orf71 Missense_Mutation p.E313K 0.35 deleterious(0) benign(0.111) TCGA-EE-A20F-06 16 48244970 48244970 C T ABCC11 Silent p.R499R 0.39 TCGA-EE-A20F-06 16 50324451 50324451 C T ADCY7 Silent p.V85V 0.50 TCGA-EE-A20F-06 16 50326619 50326619 G A ADCY7 Silent p.G190G 0.19 TCGA-EE-A20F-06 16 70926427 70926427 G A HYDIN Missense_Mutation p.S3085F 0.28 probably_damaging(0.919) TCGA-EE-A20F-06 16 71571468 71571468 G A CHST4 Silent p.L296L 0.40 TCGA-EE-A20F-06 16 71792781 71792781 G A AP1G1 Missense_Mutation p.H343Y 0.21 tolerated(1) benign(0.002) TCGA-EE-A20F-06 16 75268999 75268999 T A BCAR1 Missense_Mutation p.N646Y 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A20F-06 16 77859226 77859226 C T VAT1L Silent p.I149I 0.35 TCGA-EE-A20F-06 16 81078293 81078293 C T ATMIN Silent p.S730S 0.28 TCGA-EE-A20F-06 16 81211412 81211412 C T PKD1L2 Intron 0.36 TCGA-EE-A20F-06 16 81279104 81279104 G A BCMO1 Missense_Mutation p.G30E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 16 9858587 9858587 C T GRIN2A Silent p.K938K 0.34 TCGA-EE-A20F-06 17 10348571 10348571 T C MYH4 Missense_Mutation p.K1760E 0.27 deleterious(0.02) benign(0.305) TCGA-EE-A20F-06 17 10541696 10541696 C T MYH3 Silent p.A1131A 0.33 TCGA-EE-A20F-06 17 10728469 10728469 C T PIRT 3'UTR 0.40 TCGA-EE-A20F-06 17 15604484 15604484 C T ZNF286A Missense_Mutation p.S19F 0.13 tolerated(0.21) benign(0.006) TCGA-EE-A20F-06 17 15619927 15619927 C T ZNF286A Missense_Mutation p.L297F 0.31 tolerated(0.16) probably_damaging(0.998) TCGA-EE-A20F-06 17 18023638 18023638 G A MYO15A Silent p.G508G 0.35 TCGA-EE-A20F-06 17 18075514 18075514 C T MYO15A Silent p.F3420F 0.35 TCGA-EE-A20F-06 17 18584124 18584124 G A ZNF286B Missense_Mutation p.S19F 0.16 deleterious(0.01) possibly_damaging(0.691) TCGA-EE-A20F-06 17 1939915 1939915 C T DPH1 Missense_Mutation p.L170F 0.29 tolerated(0.9) benign(0.026) TCGA-EE-A20F-06 17 19700741 19700741 G A ULK2 Missense_Mutation p.P593S 0.26 deleterious(0) benign(0.362) TCGA-EE-A20F-06 17 21208386 21208386 G A MAP2K3 Silent p.L240L 0.10 TCGA-EE-A20F-06 17 26955507 26955507 G A KIAA0100 Missense_Mutation p.S1457F 0.32 deleterious(0.04) benign(0.418) TCGA-EE-A20F-06 17 29855689 29855689 G A RAB11FIP4 Missense_Mutation p.D516N 0.24 deleterious(0) benign(0.009) TCGA-EE-A20F-06 17 36214086 36214086 C T YWHAEP7 RNA 0.31 TCGA-EE-A20F-06 17 36495317 36495317 C T GPR179 Missense_Mutation p.D296N 0.36 deleterious(0.02) possibly_damaging(0.764) TCGA-EE-A20F-06 17 38911230 38911230 A G KRT25 Silent p.H98H 0.21 TCGA-EE-A20F-06 17 38954593 38954593 C T KRT28 Missense_Mutation p.G195E 0.21 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A20F-06 17 39912437 39912437 G A JUP Silent p.P692P 0.45 TCGA-EE-A20F-06 17 43893932 43893932 C T CRHR1 Silent p.V75V 0.29 TCGA-EE-A20F-06 17 48247705 48247705 G A SGCA Missense_Mutation p.E317K 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A20F-06 17 48267041 48267041 G A COL1A1 Missense_Mutation p.S889F 0.43 unknown(0) TCGA-EE-A20F-06 17 48649365 48649365 G A CACNA1G Missense_Mutation p.R238Q 0.24 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A20F-06 17 4927384 4927384 C T KIF1C Missense_Mutation p.P1084S 0.41 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A20F-06 17 49278985 49278985 G A MBTD1 Missense_Mutation p.L398F 0.43 deleterious(0) probably_damaging(0.971) TCGA-EE-A20F-06 17 58143671 58143671 G A HEATR6 Missense_Mutation p.L439F 0.25 deleterious(0) probably_damaging(0.939) TCGA-EE-A20F-06 17 58227437 58227437 G A CA4 Silent p.R14R 0.21 TCGA-EE-A20F-06 17 66038262 66038262 C T KPNA2 Missense_Mutation p.P122S 0.44 tolerated(0.1) benign(0.123) TCGA-EE-A20F-06 17 6919869 6919869 C T C17orf49 Missense_Mutation p.L92F 0.27 tolerated(0.05) possibly_damaging(0.804) TCGA-EE-A20F-06 17 71166295 71166295 C T SSTR2 Silent p.S279S 0.70 TCGA-EE-A20F-06 17 7190004 7190004 C T SLC2A4 3'UTR 0.30 TCGA-EE-A20F-06 17 72436125 72436125 C T GPRC5C Silent p.I115I 0.66 TCGA-EE-A20F-06 17 7366368 7366368 C T ZBTB4 Missense_Mutation p.E645K 0.35 benign(0.039) TCGA-EE-A20F-06 17 76167007 76167007 A T SYNGR2 Missense_Mutation p.Y70F 0.19 tolerated(0.12) benign(0.167) TCGA-EE-A20F-06 17 76455993 76455993 C T DNAH17 Missense_Mutation p.G3162S 0.51 possibly_damaging(0.452) TCGA-EE-A20F-06 17 77710968 77710968 C T ENPP7 Silent p.V385V 0.53 TCGA-EE-A20F-06 17 80196777 80196777 G A SLC16A3 Silent p.R441R 0.24 TCGA-EE-A20F-06 17 80196778 80196778 G A SLC16A3 Missense_Mutation p.E442K 0.23 tolerated(0.15) possibly_damaging(0.814) TCGA-EE-A20F-06 17 8193120 8193120 C T RANGRF Intron 0.34 TCGA-EE-A20F-06 18 14511960 14511960 G A POTEC Silent p.L522L 0.33 TCGA-EE-A20F-06 18 21483967 21483967 C T LAMA3 Missense_Mutation p.S2130F 0.26 probably_damaging(0.996) TCGA-EE-A20F-06 18 21494765 21494765 C T LAMA3 Missense_Mutation p.L2529F 0.34 possibly_damaging(0.859) TCGA-EE-A20F-06 18 2567121 2567121 G A METTL4 Missense_Mutation p.P32L 0.25 tolerated(0.26) benign(0.001) TCGA-EE-A20F-06 18 28602456 28602456 C T DSC3 Missense_Mutation p.G263E 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 18 28737400 28737400 G A DSC1 Silent p.F95F 0.40 TCGA-EE-A20F-06 18 47518741 47518741 G A MYO5B Nonsense_Mutation p.Q225* 0.36 TCGA-EE-A20F-06 18 48190586 48190586 C T MAPK4 Silent p.P86P 0.37 TCGA-EE-A20F-06 18 48190637 48190637 C T MAPK4 Silent p.I103I 0.28 TCGA-EE-A20F-06 18 56587240 56587240 C T ZNF532 Missense_Mutation p.S574L 0.31 deleterious(0.02) benign(0.154) TCGA-EE-A20F-06 18 60227843 60227843 C T ZCCHC2 Missense_Mutation p.H506Y 0.29 tolerated(0.15) probably_damaging(0.993) TCGA-EE-A20F-06 18 61390314 61390314 C T SERPINB11 Missense_Mutation p.P287L 0.40 deleterious(0) probably_damaging(0.957) TCGA-EE-A20F-06 18 8784805 8784805 C T SOGA2 Silent p.I565I 0.25 TCGA-EE-A20F-06 19 10091339 10091339 C T COL5A3 Silent p.G863G 0.33 TCGA-EE-A20F-06 19 10204224 10204224 C T ANGPTL6 Silent p.G341G 0.50 TCGA-EE-A20F-06 19 10475346 10475346 C A TYK2 Missense_Mutation p.E437D 0.13 tolerated(0.39) benign(0.05) TCGA-EE-A20F-06 19 10502343 10502343 G A CDC37 Missense_Mutation p.L341F 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A20F-06 19 12542018 12542018 G A ZNF443 Missense_Mutation p.S323F 0.33 tolerated(0.24) benign(0.068) TCGA-EE-A20F-06 19 15289986 15289986 G C NOTCH3 Missense_Mutation p.R1190G 0.27 tolerated(0.24) probably_damaging(0.942) TCGA-EE-A20F-06 19 15508390 15508390 G A AKAP8L Missense_Mutation p.T449I 0.25 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A20F-06 19 15586356 15586356 G A PGLYRP2 Silent p.A375A 0.37 TCGA-EE-A20F-06 19 17373783 17373783 C T USHBP1 Missense_Mutation p.D74N 0.42 tolerated(0.06) benign(0.019) TCGA-EE-A20F-06 19 17948743 17948743 C T JAK3 Missense_Mutation p.E567K 0.35 deleterious(0.05) probably_damaging(0.976) TCGA-EE-A20F-06 19 18897086 18897086 C T COMP Missense_Mutation p.D424N 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A20F-06 19 20959171 20959171 G A ZNF66 5'Flank 0.25 TCGA-EE-A20F-06 19 23844919 23844919 G A ZNF675 Missense_Mutation p.P75S 0.22 tolerated(0.09) benign(0.01) TCGA-EE-A20F-06 19 23926712 23926712 G A ZNF681 Missense_Mutation p.S547L 0.25 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A20F-06 19 2515087 2515087 G A GNG7 Missense_Mutation p.P47L 0.25 deleterious(0) possibly_damaging(0.562) TCGA-EE-A20F-06 19 2989288 2989288 C T TLE6 Missense_Mutation p.P324S 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A20F-06 19 308815 308815 G A MIER2 Silent p.V365V 0.24 TCGA-EE-A20F-06 19 36368622 36368622 G A APLP1 Missense_Mutation p.E483K 0.29 deleterious(0.01) benign(0.302) TCGA-EE-A20F-06 19 37413675 37413675 G T ZNF568 Translation_Start_Site p.M1? 0.30 benign(0.019) TCGA-EE-A20F-06 19 37677419 37677419 G A ZNF585B Silent p.N340N 0.67 TCGA-EE-A20F-06 19 3778322 3778322 C T MATK Nonsense_Mutation p.W462* 0.30 TCGA-EE-A20F-06 19 38951100 38951100 C T RYR1 Missense_Mutation p.P816S 0.41 probably_damaging(0.998) TCGA-EE-A20F-06 19 39787462 39787462 G A IFNL1 Silent p.L63L 0.60 TCGA-EE-A20F-06 19 43372477 43372477 G A PSG1 Missense_Mutation p.S340L 0.38 deleterious(0) benign(0.274) TCGA-EE-A20F-06 19 44590614 44590614 C T ZNF284 Missense_Mutation p.S328L 0.57 deleterious(0) possibly_damaging(0.753) TCGA-EE-A20F-06 19 4538804 4538804 G A LRG1 Silent p.G64G 0.32 TCGA-EE-A20F-06 19 49362159 49362159 G A PLEKHA4 Silent p.P310P 0.32 TCGA-EE-A20F-06 19 49442734 49442734 C T DHDH Missense_Mutation p.S132F 0.29 tolerated(0.41) benign(0.146) TCGA-EE-A20F-06 19 49878174 49878174 G A DKKL1 Silent p.K206K 0.29 TCGA-EE-A20F-06 19 50210789 50210789 C T CPT1C Missense_Mutation p.S453F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 19 51331043 51331043 T A KLK15 Missense_Mutation p.E24D 0.39 tolerated(0.46) benign(0.124) TCGA-EE-A20F-06 19 51883892 51883892 G A LIM2 Silent p.T151T 0.24 TCGA-EE-A20F-06 19 51984672 51984672 C T CEACAM18 Silent p.S203S 0.22 TCGA-EE-A20F-06 19 52249846 52249846 C T FPR1 Silent p.Q134Q 0.39 TCGA-EE-A20F-06 19 52469330 52469330 G A ZNF350 Missense_Mutation p.H126Y 0.38 tolerated(0.07) possibly_damaging(0.688) TCGA-EE-A20F-06 19 53645150 53645150 G A ZNF347 Missense_Mutation p.H312Y 0.38 deleterious(0) probably_damaging(0.962) TCGA-EE-A20F-06 19 54204530 54204530 C T MIR520B RNA 0.25 TCGA-EE-A20F-06 19 54783720 54783720 C T LILRB2 Missense_Mutation p.G94E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 19 55145111 55145111 C T LILRB1 Silent p.S428S 0.20 TCGA-EE-A20F-06 19 56733512 56733512 G A ZSCAN5A Missense_Mutation p.S308F 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20F-06 19 56896388 56896388 C T ZNF582 Missense_Mutation p.G133E 0.30 tolerated(0.4) benign(0.003) TCGA-EE-A20F-06 19 56896389 56896389 C T ZNF582 Missense_Mutation p.G133R 0.31 tolerated(0.19) benign(0.003) TCGA-EE-A20F-06 19 57646222 57646222 G A ZIM3 3'UTR 0.26 TCGA-EE-A20F-06 19 58018621 58018621 T G ZNF773 Silent p.P386P 0.25 TCGA-EE-A20F-06 19 580426 580426 C T BSG Missense_Mutation p.P207L 0.41 tolerated(0.47) probably_damaging(0.962) TCGA-EE-A20F-06 19 8193922 8193922 C T FBN3 Silent p.E762E 0.37 TCGA-EE-A20F-06 19 9057172 9057172 C T MUC16 Missense_Mutation p.D10092N 0.21 benign(0.016) TCGA-EE-A20F-06 19 9058358 9058358 T A MUC16 Silent p.G9696G 0.36 TCGA-EE-A20F-06 19 9061944 9061944 G A MUC16 Missense_Mutation p.S8501F 0.34 unknown(0) TCGA-EE-A20F-06 19 9075170 9075170 G A MUC16 Silent p.I4092I 0.34 TCGA-EE-A20F-06 19 9087932 9087932 C T MUC16 Missense_Mutation p.A1295T 0.33 unknown(0) TCGA-EE-A20F-06 19 9213420 9213420 G A OR7G2 Missense_Mutation p.S188F 0.21 deleterious(0.01) benign(0.222) TCGA-EE-A20F-06 19 9577906 9577906 C T ZNF560 Missense_Mutation p.E573K 0.30 tolerated(0.28) possibly_damaging(0.874) TCGA-EE-A20F-06 1 103480069 103480069 G A COL11A1 Missense_Mutation p.R524W 0.32 probably_damaging(0.999) TCGA-EE-A20F-06 1 107973430 107973430 C T NTNG1 Silent p.V382V 0.24 TCGA-EE-A20F-06 1 109716417 109716418 - GA KIAA1324 Frame_Shift_Ins p.T306Kfs*64 0.34 TCGA-EE-A20F-06 1 114442506 114442506 G A AP4B1 Intron 0.30 TCGA-EE-A20F-06 1 11579468 11579468 C T PTCHD2 Missense_Mutation p.A649V 0.40 tolerated(0.61) benign(0.357) TCGA-EE-A20F-06 1 12725981 12725981 G C AADACL4 Missense_Mutation p.K153N 0.26 tolerated(0.06) probably_damaging(0.949) TCGA-EE-A20F-06 1 12856064 12856064 G A PRAMEF1 Silent p.K448K 0.23 TCGA-EE-A20F-06 1 150049229 150049229 C T VPS45 Missense_Mutation p.L166F 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A20F-06 1 152275373 152275373 C T FLG Missense_Mutation p.G3997R 0.24 unknown(0) TCGA-EE-A20F-06 1 152283838 152283838 C T FLG Missense_Mutation p.G1175E 0.32 probably_damaging(0.931) TCGA-EE-A20F-06 1 152552098 152552098 C T LCE3D 3'UTR 0.26 TCGA-EE-A20F-06 1 154480940 154480940 C T TDRD10 Missense_Mutation p.P42S 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A20F-06 1 155168388 155168388 C T THBS3 Missense_Mutation p.G629E 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20F-06 1 158226856 158226856 T C CD1A Splice_Site p.X295_splice 0.33 TCGA-EE-A20F-06 1 158644451 158644451 G A SPTA1 Missense_Mutation p.S376L 0.30 tolerated(1) benign(0.002) TCGA-EE-A20F-06 1 161011452 161011452 G A USF1 Missense_Mutation p.P154L 0.28 deleterious(0.01) benign(0.041) TCGA-EE-A20F-06 1 161044074 161044074 G A PVRL4 Silent p.L364L 0.20 TCGA-EE-A20F-06 1 161928323 161928323 C T ATF6 Missense_Mutation p.S631L 0.31 deleterious(0) possibly_damaging(0.676) TCGA-EE-A20F-06 1 16202846 16202846 C T SPEN Missense_Mutation p.A185V 0.56 benign(0.05) TCGA-EE-A20F-06 1 16257610 16257610 G A SPEN Silent p.E1625E 0.55 TCGA-EE-A20F-06 1 166891852 166891852 C T ILDR2 Missense_Mutation p.D397N 0.34 deleterious(0.05) possibly_damaging(0.455) TCGA-EE-A20F-06 1 170699420 170699420 C T PRRX1 Intron 0.41 TCGA-EE-A20F-06 1 170934334 170934334 G T MROH9 Nonsense_Mutation p.E140* 0.44 TCGA-EE-A20F-06 1 171890961 171890961 G A DNM3 Missense_Mutation p.E79K 0.36 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A20F-06 1 173494046 173494046 G A SLC9C2 Missense_Mutation p.R796C 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20F-06 1 173880994 173880994 G A SERPINC1 Silent p.T189T 0.31 TCGA-EE-A20F-06 1 17597430 17597430 G A PADI3 Nonsense_Mutation p.W296* 0.53 TCGA-EE-A20F-06 1 179981138 179981138 C T CEP350 Missense_Mutation p.P441S 0.31 probably_damaging(1) TCGA-EE-A20F-06 1 184692952 184692952 T G EDEM3 Missense_Mutation p.K262N 0.22 tolerated(0.08) possibly_damaging(0.532) TCGA-EE-A20F-06 1 184767259 184767259 G A FAM129A Silent p.V540V 0.23 TCGA-EE-A20F-06 1 19634998 19634998 C T AKR7A2 Missense_Mutation p.G146D 0.53 tolerated(0.48) benign(0.002) TCGA-EE-A20F-06 1 196705994 196705994 C T CFH Silent p.P818P 0.48 TCGA-EE-A20F-06 1 196759338 196759338 G A CFHR3 Silent p.S259S 0.19 TCGA-EE-A20F-06 1 197396933 197396933 G A CRB1 Silent p.K826K 0.20 TCGA-EE-A20F-06 1 204985601 204985601 G A NFASC Silent p.E1219E 0.21 TCGA-EE-A20F-06 1 205497199 205497199 C - CDK18 Frame_Shift_Del p.T324Qfs*9 0.16 TCGA-EE-A20F-06 1 208215667 208215667 G A PLXNA2 Silent p.L1354L 0.41 TCGA-EE-A20F-06 1 241146407 241146407 C T RGS7 Silent p.L66L 0.52 TCGA-EE-A20F-06 1 241964447 241964447 G A WDR64 Missense_Mutation p.R1059K 0.39 tolerated_low_confidence(0.79) benign(0.004) TCGA-EE-A20F-06 1 24384090 24384090 C T MYOM3 Missense_Mutation p.G1360R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 1 247769766 247769766 G A OR2G3 Silent p.R293R 0.36 TCGA-EE-A20F-06 1 39384691 39384691 C T RHBDL2 Missense_Mutation p.R65K 0.31 tolerated(0.08) benign(0.084) TCGA-EE-A20F-06 1 40704907 40704907 T C RLF Silent p.F1511F 0.31 TCGA-EE-A20F-06 1 40882506 40882506 C T SMAP2 Missense_Mutation p.P301L 0.38 deleterious(0) possibly_damaging(0.617) TCGA-EE-A20F-06 1 42050203 42050203 G A HIVEP3 Missense_Mutation p.S89F 0.27 possibly_damaging(0.877) TCGA-EE-A20F-06 1 53535824 53535824 C T PODN Silent p.N147N 0.40 TCGA-EE-A20F-06 1 57169700 57169700 C T PRKAA2 Missense_Mutation p.S282F 0.34 deleterious(0.04) possibly_damaging(0.498) TCGA-EE-A20F-06 1 57209867 57209867 G A C1orf168 Missense_Mutation p.S487L 0.30 tolerated(0.1) benign(0.048) TCGA-EE-A20F-06 1 60456313 60456313 G A C1orf87 3'UTR 0.32 TCGA-EE-A20F-06 1 66083654 66083654 C T LEPR Silent p.I740I 0.32 TCGA-EE-A20F-06 1 67561968 67561968 G A C1orf141 Missense_Mutation p.S128F 0.35 tolerated(0.26) probably_damaging(0.919) TCGA-EE-A20F-06 1 75055687 75055687 C - C1orf173 Frame_Shift_Del p.D602Tfs*22 0.25 TCGA-EE-A20F-06 1 75097441 75097441 G A C1orf173 Missense_Mutation p.R259C 0.26 deleterious(0.01) possibly_damaging(0.695) TCGA-EE-A20F-06 1 75608860 75608860 C T LHX8 Silent p.V149V 0.30 TCGA-EE-A20F-06 1 86515855 86515855 A G COL24A1 Silent p.F619F 0.30 TCGA-EE-A20F-06 20 1285660 1285660 C T SNPH Silent p.I149I 0.30 TCGA-EE-A20F-06 20 1551747 1551747 C T SIRPB1 Missense_Mutation p.R263K 0.47 tolerated(0.92) benign(0.024) TCGA-EE-A20F-06 20 30672208 30672208 C T HCK Missense_Mutation p.L233F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20F-06 20 31024547 31024547 C T ASXL1 Silent p.S1344S 0.28 TCGA-EE-A20F-06 20 34219678 34219678 G A CPNE1 Missense_Mutation p.P192S 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A20F-06 20 34219679 34219679 G A CPNE1 Silent p.N191N 0.25 TCGA-EE-A20F-06 20 43936799 43936799 C T RBPJL Silent p.P13P 0.33 TCGA-EE-A20F-06 20 57769021 57769021 G A ZNF831 Missense_Mutation p.G983R 0.42 deleterious(0.01) possibly_damaging(0.774) TCGA-EE-A20F-06 20 60448860 60448860 C T CDH4 Silent p.I318I 0.25 TCGA-EE-A20F-06 20 9417698 9417698 G A PLCB4 Missense_Mutation p.G876E 0.72 tolerated(0.36) benign(0.037) TCGA-EE-A20F-06 20 9519914 9519914 G A PAK7 3'UTR 0.46 TCGA-EE-A20F-06 20 9624797 9624797 T G PAK7 Silent p.T60T 0.37 TCGA-EE-A20F-06 21 27372454 27372454 C T APP Missense_Mutation p.M303I 0.15 tolerated(0.19) possibly_damaging(0.593) TCGA-EE-A20F-06 21 38380459 38380459 C T RIPPLY3 Missense_Mutation p.P36L 0.33 deleterious(0.03) benign(0.301) TCGA-EE-A20F-06 21 39755406 39755406 C T ERG Nonsense_Mutation p.W460* 0.38 TCGA-EE-A20F-06 21 41668061 41668061 C T DSCAM Silent p.G701G 0.30 TCGA-EE-A20F-06 21 43543040 43543040 C T UMODL1 Missense_Mutation p.P1104L 0.58 deleterious(0.01) benign(0.14) TCGA-EE-A20F-06 21 47916994 47916994 C T DIP2A Missense_Mutation p.S126L 0.28 deleterious(0) benign(0.219) TCGA-EE-A20F-06 22 17073042 17073042 C A CCT8L2 Silent p.R133R 0.47 TCGA-EE-A20F-06 22 17280797 17280797 G A XKR3 Silent p.F151F 0.33 TCGA-EE-A20F-06 22 29139951 29139951 C T HSCB Silent p.F106F 0.33 TCGA-EE-A20F-06 22 38340169 38340169 C T C22orf23 3'UTR 0.45 TCGA-EE-A20F-06 22 38617542 38617542 G A TMEM184B Silent p.S386S 0.34 TCGA-EE-A20F-06 22 40719313 40719313 C T TNRC6B 3'UTR 0.43 TCGA-EE-A20F-06 22 44579262 44579262 C T PARVG Missense_Mutation p.P18L 0.38 tolerated(0.91) benign(0.002) TCGA-EE-A20F-06 22 44579263 44579263 C T PARVG Silent p.P18P 0.35 TCGA-EE-A20F-06 22 45593793 45593793 G A KIAA0930 Missense_Mutation p.S356F 0.24 deleterious(0.04) probably_damaging(0.984) TCGA-EE-A20F-06 22 45683217 45683217 G A UPK3A Missense_Mutation p.A125T 0.33 deleterious(0.02) possibly_damaging(0.638) TCGA-EE-A20F-06 22 50487714 50487714 C T TTLL8 Missense_Mutation p.M112I 0.28 tolerated(0.47) benign(0.001) TCGA-EE-A20F-06 22 50580549 50580549 G A MOV10L1 Missense_Mutation p.E704K 0.21 tolerated(1) benign(0) TCGA-EE-A20F-06 2 103334980 103334980 G A MFSD9 Missense_Mutation p.P442S 0.34 tolerated(0.08) benign(0.265) TCGA-EE-A20F-06 2 107422981 107422981 T C ST6GAL2 3'UTR 0.55 TCGA-EE-A20F-06 2 108881382 108881382 G A SULT1C3 Missense_Mutation p.M241I 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 2 109522810 109522810 C T EDAR Silent p.R326R 0.28 TCGA-EE-A20F-06 2 112786453 112786453 G A MERTK 3'UTR 0.20 TCGA-EE-A20F-06 2 112942913 112942913 C T FBLN7 Missense_Mutation p.P315L 0.25 deleterious(0.03) benign(0.169) TCGA-EE-A20F-06 2 141143474 141143474 C T LRP1B Missense_Mutation p.E3507K 0.34 possibly_damaging(0.621) TCGA-EE-A20F-06 2 162627542 162627542 C T SLC4A10 Silent p.H36H 0.28 TCGA-EE-A20F-06 2 167133620 167133620 G A SCN9A Missense_Mutation p.S905F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 2 179425950 179425950 A T TTN Missense_Mutation p.N28303K 0.52 TCGA-EE-A20F-06 2 179472269 179472269 C T TTN Missense_Mutation p.D17716N 0.49 TCGA-EE-A20F-06 2 179496019 179496019 G A TTN Missense_Mutation p.P14586S 0.40 TCGA-EE-A20F-06 2 179604789 179604789 G C TTN Missense_Mutation p.Q4391E 0.51 TCGA-EE-A20F-06 2 197138819 197138819 G T HECW2 Missense_Mutation p.P1055Q 0.14 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A20F-06 2 201534342 201534342 C T AOX1 Silent p.F1281F 0.54 TCGA-EE-A20F-06 2 205978243 205978243 G A PARD3B Missense_Mutation p.G208R 0.12 deleterious(0) probably_damaging(0.991) TCGA-EE-A20F-06 2 213291058 213291058 A T ERBB4 Intron 0.54 TCGA-EE-A20F-06 2 220437118 220437118 T - INHA Frame_Shift_Del p.F8Sfs*4 0.41 TCGA-EE-A20F-06 2 228419201 228419201 C T AGFG1 Missense_Mutation p.P582L 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 2 237490141 237490141 G A ACKR3 Missense_Mutation p.D345N 0.61 tolerated(0.09) benign(0.099) TCGA-EE-A20F-06 2 239164311 239164311 C T PER2 Silent p.Q769Q 0.43 TCGA-EE-A20F-06 2 46017 46017 C T FAM110C Silent p.V123V 0.56 TCGA-EE-A20F-06 2 49381507 49381507 C T FSHR Missense_Mutation p.G17E 0.38 tolerated(0.18) benign(0.055) TCGA-EE-A20F-06 2 79313602 79313602 T C REG1B Missense_Mutation p.N71S 0.33 deleterious(0.04) benign(0.407) TCGA-EE-A20F-06 2 86292523 86292523 C A POLR1A Silent p.R644R 0.08 TCGA-EE-A20F-06 2 86831059 86831059 G A RNF103 Silent p.G655G 0.62 TCGA-EE-A20F-06 2 89339724 89339724 G A IGKV1-12 Silent p.F116F 0.46 TCGA-EE-A20F-06 2 89399410 89399410 C T IGKV1-16 Missense_Mutation p.S98N 0.48 tolerated(0.08) benign(0.246) TCGA-EE-A20F-06 2 89459307 89459307 G A IGKV6-21 Silent p.F90F 0.55 TCGA-EE-A20F-06 2 97405801 97405801 C T LMAN2L 5'UTR 0.33 TCGA-EE-A20F-06 3 111899457 111899457 C T SLC9C1 Missense_Mutation p.G901D 0.27 tolerated(0.08) benign(0.392) TCGA-EE-A20F-06 3 118906807 118906807 G A UPK1B Silent p.R85R 0.47 TCGA-EE-A20F-06 3 118913189 118913189 G A UPK1B Missense_Mutation p.E198K 0.25 tolerated(0.92) benign(0.003) TCGA-EE-A20F-06 3 120347263 120347263 G A HGD Silent p.F434F 0.23 TCGA-EE-A20F-06 3 120876453 120876453 T A STXBP5L Missense_Mutation p.F286I 0.19 tolerated(0.52) benign(0.052) TCGA-EE-A20F-06 3 121416751 121416751 A G GOLGB1 Silent p.L873L 0.18 TCGA-EE-A20F-06 3 122002865 122002865 C T CASR Silent p.F698F 0.21 TCGA-EE-A20F-06 3 124157777 124157777 G A KALRN Missense_Mutation p.D1029N 0.24 deleterious(0) possibly_damaging(0.811) TCGA-EE-A20F-06 3 127399459 127399459 C T ABTB1 3'UTR 0.31 TCGA-EE-A20F-06 3 129185821 129185821 C T IFT122 Silent p.L269L 0.35 TCGA-EE-A20F-06 3 131261629 131261629 G A CPNE4 Silent p.F437F 0.46 TCGA-EE-A20F-06 3 137880874 137880874 C T DBR1 Missense_Mutation p.E498K 0.24 tolerated(0.18) benign(0.14) TCGA-EE-A20F-06 3 1424998 1424998 G A CNTN6 Missense_Mutation p.G808E 0.53 tolerated(0.72) possibly_damaging(0.697) TCGA-EE-A20F-06 3 148458955 148458955 G A AGTR1 Missense_Mutation p.G45R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 3 148600313 148600313 C T CPA3 Missense_Mutation p.R237C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 3 151012365 151012365 G A GPR87 Silent p.I223I 0.19 TCGA-EE-A20F-06 3 151475430 151475430 G A AADACL2 3'UTR 0.18 TCGA-EE-A20F-06 3 151545805 151545805 G A AADAC Missense_Mutation p.G349R 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A20F-06 3 152150503 152150503 C T MBNL1 Intron 0.25 TCGA-EE-A20F-06 3 155241704 155241704 G T PLCH1 Nonsense_Mutation p.C472* 0.25 TCGA-EE-A20F-06 3 155560378 155560378 A - SLC33A1 Frame_Shift_Del p.L269* 0.15 TCGA-EE-A20F-06 3 164786982 164786982 C T SI Missense_Mutation p.G86E 0.26 tolerated(1) benign(0) TCGA-EE-A20F-06 3 170108124 170108124 C T SKIL Missense_Mutation p.P515S 0.19 tolerated(0.25) benign(0.004) TCGA-EE-A20F-06 3 170727809 170727809 G A SLC2A2 Missense_Mutation p.S145L 0.56 tolerated(0.05) benign(0.013) TCGA-EE-A20F-06 3 171965529 171965529 C T FNDC3B Silent p.P157P 0.27 TCGA-EE-A20F-06 3 172694798 172694798 C T SPATA16 Missense_Mutation p.R298K 0.23 tolerated(0.1) benign(0.001) TCGA-EE-A20F-06 3 183210442 183210442 C T KLHL6 Silent p.K468K 0.47 TCGA-EE-A20F-06 3 188925305 188925305 G A TPRG1 Silent p.Q44Q 0.26 TCGA-EE-A20F-06 3 36779908 36779908 C T DCLK3 Silent p.E81E 0.43 TCGA-EE-A20F-06 3 38889116 38889116 C T SCN11A Missense_Mutation p.G1482E 0.42 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A20F-06 3 45988747 45988747 G A CXCR6 Nonsense_Mutation p.W258* 0.50 TCGA-EE-A20F-06 3 45988748 45988748 G A CXCR6 Missense_Mutation p.E259K 0.54 tolerated(0.23) possibly_damaging(0.782) TCGA-EE-A20F-06 3 49699687 49699687 G A BSN Missense_Mutation p.R3470Q 0.46 unknown(0) TCGA-EE-A20F-06 3 52397078 52397078 C T DNAH1 Missense_Mutation p.S1721F 0.38 probably_damaging(0.999) TCGA-EE-A20F-06 3 58622930 58622930 G A FAM3D Silent p.F132F 0.42 TCGA-EE-A20F-06 3 69247890 69247890 G A FRMD4B Silent p.F304F 0.29 TCGA-EE-A20F-06 3 81643160 81643160 C T GBE1 Missense_Mutation p.R336K 0.21 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A20F-06 3 89445047 89445047 C T EPHA3 Missense_Mutation p.S456F 0.34 tolerated(0.06) possibly_damaging(0.902) TCGA-EE-A20F-06 3 89445048 89445048 C T EPHA3 Silent p.S456S 0.34 TCGA-EE-A20F-06 3 9486749 9486749 G T SETD5 Missense_Mutation p.C402F 0.56 deleterious(0) probably_damaging(0.997) TCGA-EE-A20F-06 3 97167434 97167434 C T EPHA6 Missense_Mutation p.S585F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20F-06 3 9934787 9934787 C T JAGN1 Missense_Mutation p.P93L 0.56 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A20F-06 4 104512789 104512789 G A TACR3 Missense_Mutation p.P314S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 4 1084575 1084575 C T RNF212 Missense_Mutation p.E100K 0.18 tolerated(0.11) benign(0.099) TCGA-EE-A20F-06 4 110624538 110624538 G T CASP6 Nonsense_Mutation p.S5* 0.12 TCGA-EE-A20F-06 4 110866282 110866282 G C EGF Missense_Mutation p.W264S 0.15 tolerated(0.6) benign(0.009) TCGA-EE-A20F-06 4 126242577 126242577 C T FAT4 Missense_Mutation p.R1671C 0.43 possibly_damaging(0.77) TCGA-EE-A20F-06 4 13606585 13606585 C A BOD1L1 Nonsense_Mutation p.E647* 0.31 TCGA-EE-A20F-06 4 141317331 141317331 C T CLGN Missense_Mutation p.D305N 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A20F-06 4 152020790 152020790 T C RPS3A 5'UTR 0.40 TCGA-EE-A20F-06 4 168155301 168155303 CAG - SPOCK3 In_Frame_Del p.L8del 0.18 TCGA-EE-A20F-06 4 174309545 174309545 C T SCRG1 Missense_Mutation p.D82N 0.23 tolerated_low_confidence(0.1) benign(0.027) TCGA-EE-A20F-06 4 177632734 177632734 G A VEGFC Missense_Mutation p.S208F 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A20F-06 4 1808278 1808278 C T FGFR3 Missense_Mutation p.S681F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 4 187172640 187172640 G A KLKB1 Splice_Site p.X290_splice 0.18 TCGA-EE-A20F-06 4 2077206 2077206 C T POLN Missense_Mutation p.E810K 0.35 deleterious(0.02) possibly_damaging(0.718) TCGA-EE-A20F-06 4 3174732 3174732 C T HTT Missense_Mutation p.S1347F 0.47 probably_damaging(0.961) TCGA-EE-A20F-06 4 40776887 40776887 G A NSUN7 Missense_Mutation p.D249N 0.29 tolerated(0.12) benign(0.224) TCGA-EE-A20F-06 4 4239572 4239572 G A TMEM128 Silent p.L139L 0.18 TCGA-EE-A20F-06 4 46060312 46060312 G A GABRG1 Missense_Mutation p.P280S 0.43 deleterious(0) possibly_damaging(0.893) TCGA-EE-A20F-06 4 46060580 46060580 C T GABRG1 Missense_Mutation p.D229N 0.43 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A20F-06 4 55964962 55964962 C T KDR Missense_Mutation p.E759K 0.30 deleterious(0.02) possibly_damaging(0.493) TCGA-EE-A20F-06 4 80328264 80328264 A T GK2 Missense_Mutation p.F364Y 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 4 87705706 87705706 C T PTPN13 Missense_Mutation p.P2043L 0.33 tolerated(0.61) benign(0.003) TCGA-EE-A20F-06 4 88533671 88533671 G A DSPP Silent p.G111G 0.48 TCGA-EE-A20F-06 4 94411804 94411804 T A GRID2 Missense_Mutation p.Y625N 0.22 tolerated(0.27) possibly_damaging(0.636) TCGA-EE-A20F-06 5 108714072 108714072 G C PJA2 Missense_Mutation p.D372E 0.25 tolerated(0.79) benign(0.005) TCGA-EE-A20F-06 5 112770497 112770497 G A TSSK1B Silent p.L14L 0.33 TCGA-EE-A20F-06 5 118844860 118844860 T C HSD17B4 Missense_Mutation p.L478P 0.34 tolerated(0.09) benign(0.251) TCGA-EE-A20F-06 5 121726784 121726784 G A SNCAIP Intron 0.26 TCGA-EE-A20F-06 5 121761124 121761124 G A SNCAIP Silent p.Q360Q 0.44 TCGA-EE-A20F-06 5 128351718 128351718 C T SLC27A6 Silent p.F370F 0.30 TCGA-EE-A20F-06 5 128977636 128977636 G A ADAMTS19 Missense_Mutation p.D613N 0.46 tolerated(0.08) benign(0.248) TCGA-EE-A20F-06 5 131713919 131713919 C T SLC22A5 Intron 0.29 TCGA-EE-A20F-06 5 13721112 13721112 C T DNAH5 Silent p.A4092A 0.31 TCGA-EE-A20F-06 5 13752396 13752396 G A DNAH5 Silent p.I3625I 0.29 TCGA-EE-A20F-06 5 13820577 13820577 G A DNAH5 Missense_Mutation p.P2240L 0.37 possibly_damaging(0.713) TCGA-EE-A20F-06 5 140167038 140167038 C T PCDHA1 Missense_Mutation p.S388F 0.35 tolerated_low_confidence(0.06) benign(0.034) TCGA-EE-A20F-06 5 140208003 140208003 C T PCDHA6 Silent p.I109I 0.25 TCGA-EE-A20F-06 5 140209338 140209338 C T PCDHA6 Silent p.F554F 0.39 TCGA-EE-A20F-06 5 140209387 140209387 G A PCDHA6 Missense_Mutation p.G571S 0.32 tolerated_low_confidence(0.3) benign(0.107) TCGA-EE-A20F-06 5 140433395 140433395 C T PCDHB1 Silent p.F780F 0.31 TCGA-EE-A20F-06 5 140530589 140530589 C T PCDHB6 Missense_Mutation p.P251S 0.27 tolerated(0.06) benign(0.064) TCGA-EE-A20F-06 5 140593810 140593810 G A PCDHB13 Missense_Mutation p.E39K 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A20F-06 5 140725829 140725829 G A PCDHGA3 Silent p.A743A 0.31 TCGA-EE-A20F-06 5 140744961 140744961 C T PCDHGA5 Missense_Mutation p.S355L 0.23 deleterious_low_confidence(0.01) benign(0.219) TCGA-EE-A20F-06 5 149216075 149216075 C T PPARGC1B Missense_Mutation p.S686F 0.37 deleterious(0) probably_damaging(0.956) TCGA-EE-A20F-06 5 151784009 151784009 G A NMUR2 Silent p.F222F 0.27 TCGA-EE-A20F-06 5 153190810 153190810 G A GRIA1 3'UTR 0.38 TCGA-EE-A20F-06 5 161116153 161116153 G A GABRA6 Missense_Mutation p.G142R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 5 161128790 161128790 G A GABRA6 3'UTR 0.24 TCGA-EE-A20F-06 5 169680137 169680137 G A LCP2 Missense_Mutation p.P411S 0.31 tolerated(0.15) benign(0.007) TCGA-EE-A20F-06 5 169680138 169680138 G A LCP2 Silent p.S410S 0.31 TCGA-EE-A20F-06 5 170883684 170883684 G A FGF18 Missense_Mutation p.E167K 0.25 tolerated(0.06) possibly_damaging(0.577) TCGA-EE-A20F-06 5 178358890 178358890 C A ZFP2 Silent p.G192G 0.38 TCGA-EE-A20F-06 5 178392043 178392043 A T ZNF454 Missense_Mutation p.E213V 0.38 deleterious(0) probably_damaging(0.98) TCGA-EE-A20F-06 5 178413416 178413416 C T GRM6 Silent p.T613T 0.23 TCGA-EE-A20F-06 5 19473568 19473568 C T CDH18 Missense_Mutation p.E714K 0.33 tolerated(0.11) benign(0.016) TCGA-EE-A20F-06 5 21975459 21975459 C T CDH12 Silent p.V89V 0.29 TCGA-EE-A20F-06 5 33649018 33649018 G A ADAMTS12 Missense_Mutation p.S463F 0.23 tolerated(0.75) probably_damaging(0.984) TCGA-EE-A20F-06 5 38933078 38933078 G A OSMR Silent p.R824R 0.37 TCGA-EE-A20F-06 5 38950648 38950648 G A RICTOR Missense_Mutation p.S1101L 0.28 deleterious(0) benign(0.35) TCGA-EE-A20F-06 5 41047840 41047840 C T MROH2B Missense_Mutation p.E571K 0.35 deleterious(0) benign(0.298) TCGA-EE-A20F-06 5 41181509 41181509 G A C6 Silent p.I293I 0.37 TCGA-EE-A20F-06 5 64447731 64447731 G A ADAMTS6 Silent p.L1096L 0.27 TCGA-EE-A20F-06 5 79027102 79027102 G A CMYA5 Silent p.K838K 0.31 TCGA-EE-A20F-06 5 90052422 90052422 G A GPR98 Missense_Mutation p.G3911E 0.25 probably_damaging(0.994) TCGA-EE-A20F-06 6 10557298 10557298 C T GCNT2 Intron 0.22 TCGA-EE-A20F-06 6 10764725 10764725 C T MAK Missense_Mutation p.G611E 0.34 deleterious(0) probably_damaging(0.977) TCGA-EE-A20F-06 6 110098157 110098157 C T FIG4 Silent p.L595L 0.25 TCGA-EE-A20F-06 6 114378505 114378505 A G HS3ST5 Silent p.S319S 0.28 TCGA-EE-A20F-06 6 117715509 117715509 C T ROS1 Missense_Mutation p.G327E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 6 131995465 131995465 C T ENPP3 Intron 0.26 TCGA-EE-A20F-06 6 133046062 133046062 C T VNN3 Silent p.Q198Q 0.36 TCGA-EE-A20F-06 6 134350812 134350812 C T SLC2A12 Missense_Mutation p.G51S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 6 137323265 137323265 C T IL20RA Silent p.S364S 0.28 TCGA-EE-A20F-06 6 142468497 142468497 C T VTA1 Nonsense_Mutation p.Q25* 0.41 TCGA-EE-A20F-06 6 146231636 146231636 G A SHPRH Missense_Mutation p.S1488L 0.31 deleterious(0.01) probably_damaging(0.924) TCGA-EE-A20F-06 6 159672423 159672423 G A FNDC1 Missense_Mutation p.E1642K 0.35 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A20F-06 6 159692419 159692419 C T FNDC1 Missense_Mutation p.P1877L 0.31 deleterious(0) possibly_damaging(0.87) TCGA-EE-A20F-06 6 167595344 167595344 C T TCP10L2 Silent p.F334F 0.45 TCGA-EE-A20F-06 6 17633028 17633028 G A NUP153 Missense_Mutation p.P838S 0.26 tolerated(1) benign(0) TCGA-EE-A20F-06 6 28268797 28268797 G C PGBD1 Missense_Mutation p.S389T 0.36 tolerated(0.49) benign(0.004) TCGA-EE-A20F-06 6 28327543 28327543 C T ZKSCAN3 Silent p.P60P 0.34 TCGA-EE-A20F-06 6 28540300 28540300 C T SCAND3 Silent p.K1122K 0.28 TCGA-EE-A20F-06 6 31610092 31610092 G A BAG6 Missense_Mutation p.P681L 0.39 deleterious(0.01) benign(0.083) TCGA-EE-A20F-06 6 31678184 31678184 G A LY6G6F Silent p.L286L 0.27 TCGA-EE-A20F-06 6 31727229 31727229 C T MSH5 Missense_Mutation p.R479C 0.38 deleterious(0) probably_damaging(0.988) TCGA-EE-A20F-06 6 32008950 32008950 C T CYP21A2 3'UTR 0.13 TCGA-EE-A20F-06 6 32261331 32261331 C T C6orf10 Missense_Mutation p.M373I 0.25 tolerated(0.32) benign(0.168) TCGA-EE-A20F-06 6 42853784 42853784 C T RPL7L1 Silent p.I165I 0.34 TCGA-EE-A20F-06 6 46826469 46826469 G A GPR116 Silent p.I1057I 0.45 TCGA-EE-A20F-06 6 54804615 54804615 C T FAM83B Silent p.V282V 0.22 TCGA-EE-A20F-06 6 55378890 55378890 C T HMGCLL1 Silent p.E196E 0.30 TCGA-EE-A20F-06 6 5545501 5545501 C T FARS2 Silent p.L331L 0.34 TCGA-EE-A20F-06 6 56482102 56482102 C T DST Intron 0.30 TCGA-EE-A20F-06 6 62995763 62995763 C A KHDRBS2 Nonsense_Mutation p.E31* 0.41 TCGA-EE-A20F-06 6 84234405 84234405 G A PRSS35 3'UTR 0.34 TCGA-EE-A20F-06 6 87994192 87994192 C T GJB7 Missense_Mutation p.D147N 0.30 tolerated(0.62) benign(0.002) TCGA-EE-A20F-06 6 89891703 89891703 G A GABRR1 Silent p.F290F 0.25 TCGA-EE-A20F-06 6 97562123 97562123 T G KLHL32 Silent p.A364A 0.24 TCGA-EE-A20F-06 7 100017418 100017418 C T ZCWPW1 Silent p.E39E 0.31 TCGA-EE-A20F-06 7 106508805 106508805 G A PIK3CG Missense_Mutation p.E267K 0.43 tolerated(0.33) possibly_damaging(0.679) TCGA-EE-A20F-06 7 113519211 113519211 G A PPP1R3A Nonsense_Mutation p.Q646* 0.34 TCGA-EE-A20F-06 7 115614255 115614255 C T TFEC Missense_Mutation p.G79E 0.27 tolerated(0.29) possibly_damaging(0.901) TCGA-EE-A20F-06 7 115614256 115614256 C T TFEC Missense_Mutation p.G79R 0.27 tolerated(0.34) benign(0.242) TCGA-EE-A20F-06 7 122821124 122821124 A G SLC13A1 Missense_Mutation p.V44A 0.24 deleterious(0.01) benign(0.423) TCGA-EE-A20F-06 7 126079100 126079100 G A GRM8 3'UTR 0.31 TCGA-EE-A20F-06 7 126173086 126173086 C T GRM8 Missense_Mutation p.G784R 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 7 136700442 136700442 G A CHRM2 Missense_Mutation p.G277E 0.20 tolerated(0.44) possibly_damaging(0.691) TCGA-EE-A20F-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-EE-A20F-06 7 141478788 141478788 C T TAS2R4 Missense_Mutation p.S167L 0.32 tolerated(0.35) benign(0.004) TCGA-EE-A20F-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.27 TCGA-EE-A20F-06 7 141752712 141752712 C T MGAM Silent p.A1029A 0.33 TCGA-EE-A20F-06 7 142161931 142161931 G A TRBV6-6 Silent p.%3D 0.29 TCGA-EE-A20F-06 7 142197820 142197820 C T TRBV11-2 RNA 0.45 TCGA-EE-A20F-06 7 149489539 149489539 C T SSPO RNA 0.24 TCGA-EE-A20F-06 7 150269704 150269704 C T GIMAP4 Silent p.F182F 0.26 TCGA-EE-A20F-06 7 154143338 154143338 G A DPP6 Missense_Mutation p.G95R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 7 154862641 154862641 C T HTR5A Missense_Mutation p.S11F 0.32 tolerated(0.45) benign(0) TCGA-EE-A20F-06 7 20768024 20768024 G A ABCB5 Missense_Mutation p.R938Q 0.33 tolerated(0.06) benign(0.049) TCGA-EE-A20F-06 7 21598537 21598537 A G DNAH11 Missense_Mutation p.K205E 0.40 benign(0.098) TCGA-EE-A20F-06 7 31377867 31377867 C T NEUROD6 3'UTR 0.36 TCGA-EE-A20F-06 7 31848648 31848648 C T PDE1C Missense_Mutation p.D690N 0.26 tolerated_low_confidence(0.19) possibly_damaging(0.499) TCGA-EE-A20F-06 7 37780794 37780794 G A GPR141 Missense_Mutation p.E267K 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A20F-06 7 43496010 43496010 C T HECW1 Missense_Mutation p.S872L 0.17 deleterious(0.01) benign(0.017) TCGA-EE-A20F-06 7 54610462 54610462 C T VSTM2A Silent p.F13F 0.25 TCGA-EE-A20F-06 7 70246654 70246654 C T AUTS2 Silent p.F686F 0.36 TCGA-EE-A20F-06 7 72954361 72954361 G A BCL7B Missense_Mutation p.S96F 0.29 tolerated(0.27) benign(0.03) TCGA-EE-A20F-06 7 73010501 73010501 A T MLXIPL Missense_Mutation p.S680R 0.38 deleterious(0) probably_damaging(0.978) TCGA-EE-A20F-06 7 82387996 82387996 T A PCLO Missense_Mutation p.K5108N 0.32 unknown(0) TCGA-EE-A20F-06 7 82546062 82546062 G A PCLO Missense_Mutation p.S3747F 0.32 unknown(0) TCGA-EE-A20F-06 7 92731611 92731611 G A SAMD9 Missense_Mutation p.S1267F 0.35 deleterious(0.01) benign(0.388) TCGA-EE-A20F-06 7 94024397 94024397 C T COL1A2 Silent p.C18C 0.32 TCGA-EE-A20F-06 7 98254422 98254422 G A NPTX2 Missense_Mutation p.E278K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 7 99798617 99798617 G A GATS 3'UTR 0.30 TCGA-EE-A20F-06 8 104412536 104412536 G A SLC25A32 3'UTR 0.40 TCGA-EE-A20F-06 8 10583750 10583750 G A SOX7 Missense_Mutation p.S274F 0.33 tolerated(0.1) possibly_damaging(0.478) TCGA-EE-A20F-06 8 107718972 107718972 T C OXR1 Missense_Mutation p.L409S 0.25 tolerated(0.38) benign(0.001) TCGA-EE-A20F-06 8 107782322 107782322 A T ABRA Missense_Mutation p.W33R 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A20F-06 8 107782366 107782366 C T ABRA Missense_Mutation p.R18Q 0.38 deleterious(0.05) benign(0.085) TCGA-EE-A20F-06 8 110456097 110456097 G A PKHD1L1 Missense_Mutation p.G1586E 0.29 deleterious(0.02) probably_damaging(0.924) TCGA-EE-A20F-06 8 110509276 110509276 G A PKHD1L1 Missense_Mutation p.D3486N 0.27 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A20F-06 8 11188982 11188982 C T SLC35G5 Nonsense_Mutation p.Q123* 0.29 TCGA-EE-A20F-06 8 119593116 119593116 C T SAMD12 Silent p.L10L 0.29 TCGA-EE-A20F-06 8 124659189 124659189 G A KLHL38 Silent p.A472A 0.44 TCGA-EE-A20F-06 8 134050772 134050772 G A SLA Silent p.D316D 0.28 TCGA-EE-A20F-06 8 141301106 141301106 G A TRAPPC9 Nonsense_Mutation p.R712* 0.44 TCGA-EE-A20F-06 8 141381152 141381152 G A TRAPPC9 Missense_Mutation p.A519V 0.08 tolerated(0.09) benign(0.113) TCGA-EE-A20F-06 8 144331949 144331949 G A ZFP41 5'UTR 0.42 TCGA-EE-A20F-06 8 144808130 144808130 G A FAM83H Silent p.F1167F 0.26 TCGA-EE-A20F-06 8 146156457 146156457 G A ZNF16 Silent p.P572P 0.34 TCGA-EE-A20F-06 8 22175704 22175704 C T PIWIL2 Silent p.S773S 0.37 TCGA-EE-A20F-06 8 22175705 22175705 C T PIWIL2 Missense_Mutation p.R774W 0.37 deleterious(0) probably_damaging(0.97) TCGA-EE-A20F-06 8 24350025 24350025 G A ADAM7 Missense_Mutation p.D524N 0.34 tolerated(0.1) possibly_damaging(0.745) TCGA-EE-A20F-06 8 2820047 2820047 G A CSMD1 Missense_Mutation p.S3190F 0.23 probably_damaging(0.999) TCGA-EE-A20F-06 8 28988061 28988061 G A KIF13B Nonsense_Mutation p.Q1022* 0.33 TCGA-EE-A20F-06 8 32505725 32505725 T C NRG1 Intron 0.32 TCGA-EE-A20F-06 8 39027453 39027453 T - ADAM32 Frame_Shift_Del p.Y285Ifs*26 0.26 TCGA-EE-A20F-06 8 39468101 39468101 C T ADAM18 Missense_Mutation p.S133L 0.36 deleterious(0) probably_damaging(0.97) TCGA-EE-A20F-06 8 55539782 55539782 G A RP1 Missense_Mutation p.G1114S 0.31 tolerated(0.07) benign(0.001) TCGA-EE-A20F-06 8 57214037 57214037 C T SDR16C5 3'UTR 0.31 TCGA-EE-A20F-06 8 68956771 68956771 C T PREX2 Missense_Mutation p.R297C 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A20F-06 8 69445360 69445360 G A C8orf34 Missense_Mutation p.E361K 0.31 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A20F-06 8 7680921 7680921 G A DEFB105A Missense_Mutation p.S32F 0.15 deleterious(0.03) probably_damaging(0.962) TCGA-EE-A20F-06 8 95523311 95523311 G A KIAA1429 Intron 0.44 TCGA-EE-A20F-06 8 99120933 99120933 C A HRSP12 Missense_Mutation p.G38C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 9 107457101 107457101 G A OR13D1 Missense_Mutation p.M133I 0.44 deleterious(0) possibly_damaging(0.643) TCGA-EE-A20F-06 9 112963392 112963392 G A C9orf152 Nonsense_Mutation p.Q186* 0.42 TCGA-EE-A20F-06 9 117185660 117185660 G A DFNB31 Silent p.V520V 0.55 TCGA-EE-A20F-06 9 117553074 117553074 G A TNFSF15 Silent p.F138F 0.43 TCGA-EE-A20F-06 9 123739166 123739166 G A C5 Missense_Mutation p.R1226C 0.38 deleterious(0.03) possibly_damaging(0.758) TCGA-EE-A20F-06 9 127177713 127177713 G A PSMB7 5'UTR 0.46 TCGA-EE-A20F-06 9 136584083 136584083 C T SARDH Missense_Mutation p.A333T 0.42 tolerated(0.65) benign(0.002) TCGA-EE-A20F-06 9 34976667 34976667 G A KIAA1045 Missense_Mutation p.R260Q 0.60 tolerated(0.07) benign(0.003) TCGA-EE-A20F-06 9 69420422 69420422 G A ANKRD20A4 Missense_Mutation p.D438N 0.10 tolerated(0.12) benign(0.379) TCGA-EE-A20F-06 9 8486102 8486102 C T PTPRD Silent p.E905E 0.38 TCGA-EE-A20F-06 9 91616628 91616628 G A S1PR3 Silent p.L171L 0.52 TCGA-EE-A20F-06 X 101153003 101153003 C G ZMAT1 Missense_Mutation p.E115Q 0.80 tolerated(0.24) possibly_damaging(0.467) TCGA-EE-A20F-06 X 101572212 101572212 G A NXF2 Intron 0.34 TCGA-EE-A20F-06 X 102528903 102528903 G A TCEAL5 Nonsense_Mutation p.Q197* 0.61 TCGA-EE-A20F-06 X 103349876 103349876 C T SLC25A53 Missense_Mutation p.G22E 0.56 tolerated(0.28) benign(0.026) TCGA-EE-A20F-06 X 106788971 106788971 C T FRMPD3 Missense_Mutation p.P134L 0.38 deleterious(0) possibly_damaging(0.864) TCGA-EE-A20F-06 X 118222854 118222854 G A KIAA1210 Missense_Mutation p.S780F 0.59 tolerated(0.82) benign(0.09) TCGA-EE-A20F-06 X 130220377 130220377 A G ARHGAP36 Silent p.R452R 0.67 TCGA-EE-A20F-06 X 139866546 139866546 C T CDR1 5'UTR 0.70 TCGA-EE-A20F-06 X 142967209 142967209 G A UBE2NL Missense_Mutation p.E3K 0.66 tolerated_low_confidence(0.15) benign(0.001) TCGA-EE-A20F-06 X 31089818 31089818 C T FTHL17 Missense_Mutation p.D85N 0.90 tolerated(0.09) benign(0.101) TCGA-EE-A20F-06 X 3248228 3248228 G A MXRA5 Silent p.F180F 0.67 TCGA-EE-A20F-06 X 45051054 45051054 T A CXorf36 Missense_Mutation p.K147I 0.67 deleterious(0.01) possibly_damaging(0.735) TCGA-EE-A20F-06 X 47308213 47308213 C T ZNF41 Missense_Mutation p.S319N 0.59 deleterious(0.04) benign(0.073) TCGA-EE-A20F-06 X 50053944 50053944 C T CCNB3 Silent p.V925V 0.73 TCGA-EE-A20F-06 X 54469871 54469871 G A TSR2 Missense_Mutation p.E71K 0.59 tolerated(0.05) possibly_damaging(0.908) TCGA-EE-A20F-06 X 69282951 69282951 G A OTUD6A Missense_Mutation p.E193K 0.73 tolerated(0.2) benign(0.022) TCGA-EE-A20F-06 X 72433893 72433893 G A NAP1L2 Missense_Mutation p.P146S 0.64 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A20F-06 X 73960579 73960579 C T KIAA2022 Missense_Mutation p.M1271I 0.68 tolerated_low_confidence(0.24) benign(0.001) TCGA-EE-A20F-06 X 78010772 78010772 C T LPAR4 Missense_Mutation p.R136C 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A20F-06 X 78216689 78216689 C G P2RY10 Silent p.S224S 0.69 TCGA-EE-A20F-06 X 88009059 88009059 G A CPXCR1 Missense_Mutation p.G215E 0.63 tolerated(0.18) probably_damaging(0.988) TCGA-EE-A20F-06 X 92964700 92964700 G A FAM133A Silent p.K94K 0.49 TCGA-EE-A20F-06 Y 3447331 3447331 G A TGIF2LY Missense_Mutation p.E16K 0.56 deleterious(0.04) benign(0.003) TCGA-EE-A20H-06 10 101496042 101496042 C T CUTC Missense_Mutation p.S34L 0.87 deleterious(0) probably_damaging(0.996) TCGA-EE-A20H-06 10 107007010 107007010 C T SORCS3 Missense_Mutation p.P1009L 0.90 deleterious(0.01) benign(0.046) TCGA-EE-A20H-06 10 123256163 123256163 G A FGFR2 Silent p.P583P 0.92 TCGA-EE-A20H-06 10 124457576 124457576 C T C10orf120 Silent p.K227K 0.92 TCGA-EE-A20H-06 10 12870941 12870941 C T CAMK1D 3'UTR 0.88 TCGA-EE-A20H-06 10 133948554 133948554 T C JAKMIP3 Silent p.L287L 0.96 TCGA-EE-A20H-06 10 135440179 135440179 G A FRG2B Missense_Mutation p.P23L 0.08 deleterious(0.01) benign(0.055) TCGA-EE-A20H-06 10 25887673 25887673 C T GPR158 Missense_Mutation p.P1040S 0.74 tolerated(0.97) benign(0.004) TCGA-EE-A20H-06 10 48414335 48414335 C T GDF2 Missense_Mutation p.G178E 0.96 tolerated(0.16) benign(0.094) TCGA-EE-A20H-06 10 49459793 49459793 C T FRMPD2 Intron 1.00 TCGA-EE-A20H-06 10 49482612 49482612 C T FRMPD2 5'UTR 0.91 TCGA-EE-A20H-06 10 55849750 55849750 G A PCDH15 Missense_Mutation p.S664L 0.83 deleterious(0.01) possibly_damaging(0.686) TCGA-EE-A20H-06 10 71174766 71174766 C T TACR2 Missense_Mutation p.M174I 0.86 tolerated(0.52) benign(0.001) TCGA-EE-A20H-06 10 75072323 75072323 G A TTC18 Silent p.L401L 0.88 TCGA-EE-A20H-06 10 75607051 75607051 G A CAMK2G Nonsense_Mutation p.Q251* 0.91 TCGA-EE-A20H-06 10 76855365 76855365 C T DUSP13 Missense_Mutation p.R171Q 0.90 tolerated(0.68) benign(0.004) TCGA-EE-A20H-06 10 95848999 95848999 G A PLCE1 Intron 0.86 TCGA-EE-A20H-06 11 102666008 102666008 G A MMP1 Missense_Mutation p.P266S 0.81 tolerated(0.06) benign(0.034) TCGA-EE-A20H-06 11 108381479 108381479 C T EXPH5 Silent p.G1585G 0.64 TCGA-EE-A20H-06 11 113102986 113102986 G A NCAM1 Silent p.T494T 0.84 TCGA-EE-A20H-06 11 116703480 116703480 G A APOC3 Silent p.R60R 0.78 TCGA-EE-A20H-06 11 117647624 117647624 C T DSCAML1 Silent p.V191V 0.89 TCGA-EE-A20H-06 11 118771389 118771389 G A BCL9L Silent p.S1021S 0.84 TCGA-EE-A20H-06 11 121348870 121348870 C T SORL1 Missense_Mutation p.S149L 0.78 deleterious(0) benign(0.038) TCGA-EE-A20H-06 11 121478879 121478879 G A SORL1 Missense_Mutation p.G1745R 0.92 deleterious(0.04) probably_damaging(0.913) TCGA-EE-A20H-06 11 121478880 121478880 G T SORL1 Missense_Mutation p.G1745V 0.85 deleterious(0.04) probably_damaging(0.965) TCGA-EE-A20H-06 11 123484350 123484350 G A GRAMD1B Silent p.R594R 1.00 TCGA-EE-A20H-06 11 123908973 123908973 C T OR10G7 Missense_Mutation p.V246M 0.75 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A20H-06 11 124440223 124440223 G A OR8A1 Missense_Mutation p.D87N 0.80 deleterious(0) probably_damaging(0.989) TCGA-EE-A20H-06 11 124947392 124947392 C T SLC37A2 Silent p.F94F 1.00 TCGA-EE-A20H-06 11 125267785 125267785 C T PKNOX2 Nonsense_Mutation p.Q139* 0.80 TCGA-EE-A20H-06 11 129306875 129306875 C T BARX2 Silent p.I139I 0.76 TCGA-EE-A20H-06 11 129817060 129817060 G A PRDM10 Missense_Mutation p.P167L 0.21 tolerated(0.1) possibly_damaging(0.603) TCGA-EE-A20H-06 11 130064116 130064116 G A ST14 Silent p.L316L 0.65 TCGA-EE-A20H-06 11 19967990 19967990 C T NAV2 Silent p.I753I 0.50 TCGA-EE-A20H-06 11 20676514 20676514 C T SLC6A5 3'UTR 0.33 TCGA-EE-A20H-06 11 3681025 3681025 G A ART1 Silent p.R92R 0.48 TCGA-EE-A20H-06 11 375911 375911 C T B4GALNT4 Silent p.Y350Y 0.39 TCGA-EE-A20H-06 11 4621725 4621725 G A TRIM68 Silent p.I413I 0.32 TCGA-EE-A20H-06 11 47712337 47712337 G A AGBL2 Missense_Mutation p.R308C 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A20H-06 11 47721024 47721024 C T AGBL2 Missense_Mutation p.G223E 0.24 deleterious(0.02) benign(0.303) TCGA-EE-A20H-06 11 47721025 47721025 C T AGBL2 Missense_Mutation p.G223R 0.23 deleterious(0) possibly_damaging(0.846) TCGA-EE-A20H-06 11 4936151 4936151 G A OR51G2 Missense_Mutation p.S248F 0.53 deleterious(0) probably_damaging(0.962) TCGA-EE-A20H-06 11 4944710 4944710 G A OR51G1 Missense_Mutation p.P287L 0.34 deleterious(0) benign(0.434) TCGA-EE-A20H-06 11 4976637 4976637 C T OR51A2 Missense_Mutation p.E103K 0.93 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A20H-06 11 49974029 49974029 C T OR4C13 Missense_Mutation p.P19S 0.28 deleterious_low_confidence(0.04) benign(0.128) TCGA-EE-A20H-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.36 TCGA-EE-A20H-06 11 5172742 5172742 G A OR52A1 Silent p.V286V 0.59 TCGA-EE-A20H-06 11 5289654 5289654 G A HBE1 3'UTR 0.42 TCGA-EE-A20H-06 11 5345045 5345045 A T OR51B2 Silent p.L161L 0.66 TCGA-EE-A20H-06 11 5462079 5462079 C T OR51I1 Silent p.L222L 0.24 TCGA-EE-A20H-06 11 55136129 55136129 G A OR4A15 Missense_Mutation p.S257N 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-EE-A20H-06 11 5536749 5536749 G A UBQLNL Missense_Mutation p.S308F 0.33 tolerated(0.18) benign(0.005) TCGA-EE-A20H-06 11 55798067 55798067 C T OR5AS1 Missense_Mutation p.P58L 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A20H-06 11 55890126 55890126 C T OR8H3 Missense_Mutation p.S93F 0.31 deleterious(0) possibly_damaging(0.635) TCGA-EE-A20H-06 11 55904831 55904831 G A OR8J3 Missense_Mutation p.R122C 0.25 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A20H-06 11 55926983 55926983 C T OR8K5 Missense_Mutation p.D271N 0.64 deleterious_low_confidence(0.03) benign(0.134) TCGA-EE-A20H-06 11 56230234 56230234 G A OR5M9 Missense_Mutation p.S215F 0.25 deleterious(0) possibly_damaging(0.739) TCGA-EE-A20H-06 11 56310122 56310122 G A OR5M11 Silent p.F204F 0.32 TCGA-EE-A20H-06 11 57971343 57971343 G A OR1S2 Missense_Mutation p.S104F 0.71 deleterious(0.03) possibly_damaging(0.772) TCGA-EE-A20H-06 11 58170430 58170430 G A OR5B3 Silent p.F151F 0.25 TCGA-EE-A20H-06 11 60688446 60688446 C T TMEM109 Missense_Mutation p.A109V 0.28 tolerated(0.07) benign(0.084) TCGA-EE-A20H-06 11 60704373 60704373 C A TMEM132A Missense_Mutation p.S1023R 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 11 61957712 61957712 C T SCGB1D1 5'UTR 0.58 TCGA-EE-A20H-06 11 6261746 6261746 A T CNGA4 Missense_Mutation p.E241V 0.57 deleterious(0) probably_damaging(0.995) TCGA-EE-A20H-06 11 63078590 63078590 G A SLC22A10 3'UTR 0.52 TCGA-EE-A20H-06 11 65318909 65318909 G A LTBP3 Missense_Mutation p.P529S 0.39 tolerated(0.05) benign(0.003) TCGA-EE-A20H-06 11 67256900 67256900 C T AIP Missense_Mutation p.L148F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 11 67413303 67413303 G T ACY3 Missense_Mutation p.Q98K 0.58 tolerated(0.21) benign(0.08) TCGA-EE-A20H-06 11 69933967 69933967 C T ANO1 Missense_Mutation p.P73L 0.27 deleterious(0.02) benign(0.06) TCGA-EE-A20H-06 11 70332945 70332945 C T SHANK2 Silent p.R1152R 0.23 TCGA-EE-A20H-06 11 7324437 7324437 G A SYT9 Missense_Mutation p.E105K 0.63 tolerated(0.29) benign(0.11) TCGA-EE-A20H-06 11 7530873 7530873 C A OLFML1 Nonsense_Mutation p.Y221* 0.60 TCGA-EE-A20H-06 11 75439891 75439891 C T MOGAT2 Missense_Mutation p.P236L 0.54 tolerated(0.26) benign(0.009) TCGA-EE-A20H-06 11 77667094 77667094 G T INTS4 Missense_Mutation p.P271H 0.50 deleterious(0.01) possibly_damaging(0.779) TCGA-EE-A20H-06 11 83676394 83676394 G A DLG2 Missense_Mutation p.P392S 0.86 tolerated(0.95) probably_damaging(0.997) TCGA-EE-A20H-06 11 8435091 8435091 C T STK33 Missense_Mutation p.G432E 0.30 tolerated_low_confidence(0.96) benign(0.001) TCGA-EE-A20H-06 11 8941030 8941030 T C AKIP1 3'UTR 0.28 TCGA-EE-A20H-06 11 92087396 92087396 G A FAT3 Silent p.L706L 0.60 TCGA-EE-A20H-06 12 100813600 100813600 A C SLC17A8 Missense_Mutation p.E478A 0.26 deleterious(0.04) benign(0.15) TCGA-EE-A20H-06 12 101560428 101560428 C T SLC5A8 Missense_Mutation p.G457E 0.57 deleterious(0) probably_damaging(0.951) TCGA-EE-A20H-06 12 111990718 111990718 T C ATXN2 Missense_Mutation p.S298G 0.68 benign(0.049) TCGA-EE-A20H-06 12 113346461 113346461 G A OAS1 Missense_Mutation p.E101K 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20H-06 12 113716033 113716033 G A TPCN1 Silent p.L480L 0.18 TCGA-EE-A20H-06 12 11422583 11422583 C T PRB3 Silent p.S7S 0.51 TCGA-EE-A20H-06 12 117652986 117652986 G A NOS1 3'Flank 0.90 TCGA-EE-A20H-06 12 119540121 119540121 C T SRRM4 Missense_Mutation p.P71L 0.88 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A20H-06 12 124401217 124401217 A C DNAH10 Missense_Mutation p.T3528P 0.85 probably_damaging(0.983) TCGA-EE-A20H-06 12 132249039 132249039 G A SFSWAP Missense_Mutation p.E587K 0.94 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A20H-06 12 1953599 1953599 G A CACNA2D4 Silent p.F813F 0.41 TCGA-EE-A20H-06 12 21011452 21011452 C T LST3 Silent p.L102L 0.49 TCGA-EE-A20H-06 12 21036488 21036488 C T SLCO1B3 Missense_Mutation p.S545F 0.45 tolerated(0.2) benign(0.053) TCGA-EE-A20H-06 12 21168707 21168707 C T SLCO1B7 Silent p.F26F 0.29 TCGA-EE-A20H-06 12 22013982 22013982 C T ABCC9 Missense_Mutation p.A783T 0.18 tolerated(0.4) benign(0.02) TCGA-EE-A20H-06 12 2613673 2613673 C T CACNA1C Intron 0.40 TCGA-EE-A20H-06 12 3129827 3129827 C T TEAD4 Missense_Mutation p.P204L 0.43 tolerated(0.25) benign(0.119) TCGA-EE-A20H-06 12 33559894 33559894 G A SYT10 Missense_Mutation p.P303S 0.30 tolerated(0.35) possibly_damaging(0.874) TCGA-EE-A20H-06 12 43826148 43826148 C T ADAMTS20 Missense_Mutation p.E1019K 0.30 tolerated(0.07) probably_damaging(0.911) TCGA-EE-A20H-06 12 44148738 44148738 C T PUS7L Missense_Mutation p.G104D 0.04 tolerated(0.7) benign(0.002) TCGA-EE-A20H-06 12 47160477 47160477 C T SLC38A4 3'UTR 0.25 TCGA-EE-A20H-06 12 47172358 47172358 G A SLC38A4 Missense_Mutation p.H307Y 0.36 tolerated(0.62) benign(0.004) TCGA-EE-A20H-06 12 48501918 48501918 A G PFKM Missense_Mutation p.K49R 0.70 tolerated(0.11) benign(0.004) TCGA-EE-A20H-06 12 4919936 4919936 G A KCNA6 Missense_Mutation p.M243I 0.32 tolerated(0.48) benign(0.001) TCGA-EE-A20H-06 12 4919938 4919938 G T KCNA6 Missense_Mutation p.G244V 0.32 tolerated(0.7) benign(0) TCGA-EE-A20H-06 12 49392428 49392428 G A DDN Silent p.S77S 0.50 TCGA-EE-A20H-06 12 49416070 49416070 G A KMT2D Missense_Mutation p.P5469S 0.77 unknown(0) TCGA-EE-A20H-06 12 49416071 49416071 G A KMT2D Silent p.G5468G 0.77 TCGA-EE-A20H-06 12 49491488 49491488 G T LMBR1L Missense_Mutation p.F479L 0.29 tolerated(0.78) benign(0.016) TCGA-EE-A20H-06 12 50524405 50524405 G A CERS5 Missense_Mutation p.P368S 0.31 tolerated(0.75) benign(0.001) TCGA-EE-A20H-06 12 51685417 51685417 G A BIN2 Silent p.N491N 0.90 TCGA-EE-A20H-06 12 51855005 51855005 T C SLC4A8 Missense_Mutation p.L344S 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 12 52312839 52312839 G A ACVRL1 Silent p.K439K 0.93 TCGA-EE-A20H-06 12 54764789 54764789 T - ZNF385A Frame_Shift_Del p.E253Rfs*24 0.20 TCGA-EE-A20H-06 12 54798975 54798975 C T ITGA5 Silent p.G400G 0.21 TCGA-EE-A20H-06 12 54912696 54912696 A G NCKAP1L Splice_Site p.X474_splice 0.16 TCGA-EE-A20H-06 12 56743038 56743038 G A STAT2 Missense_Mutation p.T450I 0.35 deleterious(0) possibly_damaging(0.892) TCGA-EE-A20H-06 12 58152541 58152541 C A MARCH9 Missense_Mutation p.A301D 0.46 tolerated(0.2) benign(0.196) TCGA-EE-A20H-06 12 64858153 64858153 C T TBK1 Missense_Mutation p.P90S 0.55 tolerated(1) benign(0.06) TCGA-EE-A20H-06 12 66151915 66151915 T C RPSAP52 RNA 0.27 TCGA-EE-A20H-06 12 73015526 73015526 G A TRHDE Silent p.R845R 0.32 TCGA-EE-A20H-06 12 73056945 73056945 C T TRHDE Silent p.F1015F 0.62 TCGA-EE-A20H-06 12 77216262 77216262 C T ZDHHC17 Missense_Mutation p.A283V 0.76 tolerated(0.26) probably_damaging(0.912) TCGA-EE-A20H-06 12 79679683 79679683 G A SYT1 Missense_Mutation p.E95K 0.52 tolerated(1) benign(0.004) TCGA-EE-A20H-06 12 8075454 8075454 G A SLC2A3 Missense_Mutation p.S412F 0.44 deleterious(0.01) benign(0.443) TCGA-EE-A20H-06 12 9083324 9083324 G A PHC1 Silent p.G302G 0.62 TCGA-EE-A20H-06 13 101733929 101733929 G A NALCN Silent p.L1278L 0.68 TCGA-EE-A20H-06 13 108518107 108518107 C T FAM155A Missense_Mutation p.E280K 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A20H-06 13 114758001 114758001 G A RASA3 Silent p.S735S 0.63 TCGA-EE-A20H-06 13 21555718 21555718 C T LATS2 Missense_Mutation p.G851E 0.29 deleterious(0.03) probably_damaging(1) TCGA-EE-A20H-06 13 25255697 25255697 C T ATP12A Intron 0.24 TCGA-EE-A20H-06 13 25268653 25268653 G A ATP12A Missense_Mutation p.M489I 0.68 tolerated(0.2) benign(0.055) TCGA-EE-A20H-06 13 25353881 25353881 G A RNF17 Missense_Mutation p.G169E 0.25 tolerated(1) benign(0.137) TCGA-EE-A20H-06 13 26117518 26117518 G A ATP8A2 Missense_Mutation p.G290E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 13 28136654 28136654 A G LNX2 Silent p.L374L 0.16 TCGA-EE-A20H-06 13 28609648 28609648 G A FLT3 Silent p.I527I 0.19 TCGA-EE-A20H-06 13 31848745 31848745 C T B3GALTL Missense_Mutation p.H254Y 0.70 tolerated(0.06) benign(0.105) TCGA-EE-A20H-06 13 36202305 36202305 C T NBEA Missense_Mutation p.R2513C 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A20H-06 13 38225438 38225438 C T TRPC4 Silent p.K681K 0.68 TCGA-EE-A20H-06 13 38266355 38266355 G A TRPC4 Missense_Mutation p.L339F 0.73 deleterious(0.02) benign(0.328) TCGA-EE-A20H-06 13 52951929 52951929 G A THSD1 Missense_Mutation p.P726S 0.24 tolerated(0.4) benign(0.009) TCGA-EE-A20H-06 13 58240614 58240614 C T PCDH17 Missense_Mutation p.P860S 0.69 tolerated(0.47) benign(0.019) TCGA-EE-A20H-06 13 79213018 79213018 T - RNF219 Frame_Shift_Del p.K163Nfs*12 0.40 TCGA-EE-A20H-06 14 104212809 104212809 G A PPP1R13B Nonsense_Mutation p.Q351* 0.40 TCGA-EE-A20H-06 14 106641740 106641740 C T IGHV1-18 Silent p.Q58Q 0.40 TCGA-EE-A20H-06 14 106805234 106805234 T C IGHV4-31 Missense_Mutation p.D110G 0.32 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A20H-06 14 106878046 106878046 G A IGHV4-39 Silent p.L11L 0.43 TCGA-EE-A20H-06 14 19553780 19553780 G A POTEG Missense_Mutation p.D122N 0.06 tolerated(0.05) benign(0.067) TCGA-EE-A20H-06 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.09 tolerated(0.06) benign(0.055) TCGA-EE-A20H-06 14 20215708 20215708 G A OR4Q3 Missense_Mutation p.G41E 0.27 deleterious(0) possibly_damaging(0.66) TCGA-EE-A20H-06 14 20296457 20296457 C T OR4N2 Missense_Mutation p.P284S 0.27 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A20H-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.35 TCGA-EE-A20H-06 14 20586318 20586318 G A OR4K17 Silent p.L251L 0.48 TCGA-EE-A20H-06 14 20612583 20612583 C T OR4N5 Missense_Mutation p.S230F 0.49 tolerated(0.07) benign(0.114) TCGA-EE-A20H-06 14 22111200 22111200 G A TRAV1-2 Missense_Mutation p.G3E 0.40 tolerated(0.09) benign(0.007) TCGA-EE-A20H-06 14 22133417 22133417 G A OR4E2 Missense_Mutation p.G41R 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 14 23891496 23891496 C T MYH7 Missense_Mutation p.M1046I 0.46 deleterious(0.02) benign(0.109) TCGA-EE-A20H-06 14 29237835 29237835 C T FOXG1 Silent p.T450T 0.36 TCGA-EE-A20H-06 14 32562320 32562320 C T ARHGAP5 Silent p.S815S 0.46 TCGA-EE-A20H-06 14 60950455 60950455 C T C14orf39 Missense_Mutation p.D63N 0.47 tolerated(0.11) benign(0.016) TCGA-EE-A20H-06 14 61442787 61442787 G A TRMT5 Missense_Mutation p.R284C 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 14 63174859 63174859 G A KCNH5 Silent p.N778N 0.41 TCGA-EE-A20H-06 14 63447604 63447604 C T KCNH5 Missense_Mutation p.E310K 0.53 tolerated(0.12) probably_damaging(0.997) TCGA-EE-A20H-06 14 65230488 65230488 G A SPTB Intron 0.41 TCGA-EE-A20H-06 14 66200026 66200026 C T FUT8 Missense_Mutation p.S446L 0.38 deleterious(0) possibly_damaging(0.469) TCGA-EE-A20H-06 14 67671476 67671476 G A FAM71D Silent p.T194T 0.48 TCGA-EE-A20H-06 14 70478208 70478208 G A SMOC1 Silent p.V288V 0.53 TCGA-EE-A20H-06 14 70634890 70634890 G A SLC8A3 Silent p.L84L 0.41 TCGA-EE-A20H-06 14 77902196 77902196 G A VIPAS39 Silent p.I301I 0.46 TCGA-EE-A20H-06 14 92268603 92268603 C T TC2N Missense_Mutation p.G155E 0.37 deleterious(0) probably_damaging(0.986) TCGA-EE-A20H-06 14 93151445 93151445 G A RIN3 Missense_Mutation p.E861K 0.58 deleterious(0) probably_damaging(0.912) TCGA-EE-A20H-06 14 94582839 94582839 C T IFI27 Missense_Mutation p.A112V 0.26 tolerated(0.13) benign(0.003) TCGA-EE-A20H-06 14 94697046 94697046 C T PPP4R4 Silent p.L139L 0.47 TCGA-EE-A20H-06 14 94731763 94731763 A G PPP4R4 Missense_Mutation p.N746S 0.44 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A20H-06 14 94756405 94756405 C T SERPINA10 Missense_Mutation p.E176K 0.42 tolerated(0.09) benign(0.009) TCGA-EE-A20H-06 14 94936041 94936041 G A SERPINA9 Missense_Mutation p.S64F 0.39 deleterious(0.03) probably_damaging(0.939) TCGA-EE-A20H-06 14 95080941 95080941 G A SERPINA3 Missense_Mutation p.D55N 0.36 tolerated(0.1) benign(0.294) TCGA-EE-A20H-06 14 95108180 95108180 G A SERPINA13P RNA 0.41 TCGA-EE-A20H-06 14 96703467 96703467 C T BDKRB2 Missense_Mutation p.S8L 0.40 tolerated_low_confidence(0.26) benign(0) TCGA-EE-A20H-06 15 102292756 102292756 G A DNM1P47 RNA 0.31 TCGA-EE-A20H-06 15 20588613 20588613 C T HERC2P3 RNA 0.20 TCGA-EE-A20H-06 15 20645816 20645816 C T HERC2P3 RNA 0.37 TCGA-EE-A20H-06 15 20874840 20874840 A C NBEAP1 RNA 0.16 TCGA-EE-A20H-06 15 24921296 24921296 C T NPAP1 Silent p.I94I 0.47 TCGA-EE-A20H-06 15 24921772 24921772 G A NPAP1 Missense_Mutation p.G253E 0.41 tolerated(0.31) possibly_damaging(0.794) TCGA-EE-A20H-06 15 25453109 25453109 C T SNORD115-22 5'Flank 0.59 TCGA-EE-A20H-06 15 31362066 31362066 G A TRPM1 Intron 0.47 TCGA-EE-A20H-06 15 34042414 34042414 G A RYR3 Missense_Mutation p.E2776K 0.58 probably_damaging(0.987) TCGA-EE-A20H-06 15 34647840 34647840 G A NUTM1 Missense_Mutation p.G516E 0.39 deleterious(0.02) possibly_damaging(0.736) TCGA-EE-A20H-06 15 35045084 35045084 G A GJD2 Silent p.S187S 0.48 TCGA-EE-A20H-06 15 35045085 35045085 G A GJD2 Missense_Mutation p.S187F 0.49 tolerated(0.1) benign(0.15) TCGA-EE-A20H-06 15 40057916 40057916 T C FSIP1 Silent p.Q114Q 0.30 TCGA-EE-A20H-06 15 43815622 43815622 G A MAP1A Missense_Mutation p.D651N 0.39 probably_damaging(0.999) TCGA-EE-A20H-06 15 48062918 48062918 C T SEMA6D Missense_Mutation p.L720F 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A20H-06 15 48435142 48435142 C T MYEF2 Missense_Mutation p.G589D 0.39 tolerated(0.12) probably_damaging(1) TCGA-EE-A20H-06 15 52100745 52100745 C T TMOD2 3'UTR 0.56 TCGA-EE-A20H-06 15 54306605 54306605 C T UNC13C Missense_Mutation p.S502L 0.50 deleterious_low_confidence(0.02) benign(0.031) TCGA-EE-A20H-06 15 77450944 77450944 T C PEAK1 Missense_Mutation p.T1078A 0.41 tolerated(0.57) benign(0) TCGA-EE-A20H-06 15 78922161 78922161 G A CHRNB4 Silent p.F162F 0.48 TCGA-EE-A20H-06 15 79080695 79080695 T G ADAMTS7 Silent p.G400G 0.47 TCGA-EE-A20H-06 15 83805500 83805500 C G TM6SF1 3'UTR 0.43 TCGA-EE-A20H-06 15 83805522 83805522 T C TM6SF1 3'UTR 0.53 TCGA-EE-A20H-06 15 83926808 83926808 A T BNC1 Missense_Mutation p.F791I 0.52 tolerated(0.12) benign(0.146) TCGA-EE-A20H-06 15 85360040 85360040 C T ALPK3 5'UTR 0.85 TCGA-EE-A20H-06 15 85461793 85461793 C T SLC28A1 Silent p.S278S 0.40 TCGA-EE-A20H-06 15 88476248 88476248 G A NTRK3 Silent p.F628F 0.52 TCGA-EE-A20H-06 15 88476382 88476382 C T NTRK3 Missense_Mutation p.D584N 0.45 deleterious(0) possibly_damaging(0.819) TCGA-EE-A20H-06 16 1536423 1536423 G A PTX4 Silent p.T313T 0.48 TCGA-EE-A20H-06 16 17211549 17211549 G A XYLT1 Silent p.F837F 0.38 TCGA-EE-A20H-06 16 19127075 19127075 G A ITPRIPL2 Missense_Mutation p.G431E 0.45 tolerated(1) benign(0.124) TCGA-EE-A20H-06 16 19548723 19548723 G T CCP110 Missense_Mutation p.D578Y 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A20H-06 16 19721848 19721848 C T KNOP1 Missense_Mutation p.E350K 0.49 tolerated(0.05) probably_damaging(0.923) TCGA-EE-A20H-06 16 20359542 20359542 C T UMOD Intron 0.44 TCGA-EE-A20H-06 16 20488720 20488720 G A ACSM2A Missense_Mutation p.M376I 0.31 tolerated(0.09) benign(0.375) TCGA-EE-A20H-06 16 20556489 20556489 G A ACSM2B Missense_Mutation p.S424F 0.47 deleterious(0.01) possibly_damaging(0.875) TCGA-EE-A20H-06 16 20570759 20570759 C T ACSM2B Missense_Mutation p.R63Q 0.44 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A20H-06 16 20856428 20856428 G C AC004381.6 Missense_Mutation p.K663N 0.40 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A20H-06 16 21011761 21011761 G A DNAH3 Missense_Mutation p.P2069L 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A20H-06 16 21073863 21073863 C T DNAH3 Missense_Mutation p.M1220I 0.48 tolerated(0.08) probably_damaging(0.919) TCGA-EE-A20H-06 16 23535664 23535664 G A EARS2 3'UTR 0.44 TCGA-EE-A20H-06 16 28128740 28128740 A G XPO6 Silent p.L635L 0.38 TCGA-EE-A20H-06 16 28620193 28620193 C T SULT1A1 Intron 0.35 TCGA-EE-A20H-06 16 28997938 28997938 C T LAT Intron 0.45 TCGA-EE-A20H-06 16 30104120 30104120 C T YPEL3 Missense_Mutation p.E129K 0.53 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A20H-06 16 30208389 30208389 G A SLX1A Missense_Mutation p.G226E 0.29 tolerated(0.27) benign(0.005) TCGA-EE-A20H-06 16 30536353 30536353 C A ZNF768 Nonsense_Mutation p.E370* 0.36 TCGA-EE-A20H-06 16 30975992 30975992 C T SETD1A Missense_Mutation p.S310F 0.50 possibly_damaging(0.737) TCGA-EE-A20H-06 16 31429405 31429405 C T ITGAD Missense_Mutation p.H837Y 0.43 tolerated(0.47) benign(0.006) TCGA-EE-A20H-06 16 3614346 3614346 A C NLRC3 Missense_Mutation p.F245V 0.31 tolerated(0.06) benign(0.213) TCGA-EE-A20H-06 16 47485329 47485329 G A ITFG1 Nonsense_Mutation p.Q180* 0.39 TCGA-EE-A20H-06 16 4909960 4909960 C T UBN1 Missense_Mutation p.S221F 0.43 deleterious(0) possibly_damaging(0.736) TCGA-EE-A20H-06 16 5121840 5121840 G A ALG1 5'UTR 0.41 TCGA-EE-A20H-06 16 55855329 55855329 G A CES1 Missense_Mutation p.S215F 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A20H-06 16 57016084 57016084 C T CETP Missense_Mutation p.S419F 0.44 tolerated(0.53) benign(0.016) TCGA-EE-A20H-06 16 57775704 57775704 C T KATNB1 Missense_Mutation p.S49F 0.45 deleterious(0) probably_damaging(0.965) TCGA-EE-A20H-06 16 61689414 61689414 G A CDH8 Silent p.G622G 0.55 TCGA-EE-A20H-06 16 66434765 66434765 G A CDH5 Silent p.G561G 0.51 TCGA-EE-A20H-06 16 66768134 66768134 C T DYNC1LI2 Silent p.R260R 0.38 TCGA-EE-A20H-06 16 66768135 66768135 C T DYNC1LI2 Missense_Mutation p.R260K 0.38 tolerated(0.81) benign(0.009) TCGA-EE-A20H-06 16 67690334 67690334 C T RLTPR Silent p.S1274S 0.37 TCGA-EE-A20H-06 16 69681273 69681273 C T NFAT5 Missense_Mutation p.S199F 0.42 probably_damaging(0.996) TCGA-EE-A20H-06 16 69681274 69681274 C T NFAT5 Silent p.S199S 0.42 TCGA-EE-A20H-06 16 71015379 71015379 G A HYDIN Silent p.I1475I 0.47 TCGA-EE-A20H-06 16 77468357 77468357 A G ADAMTS18 Silent p.L46L 0.33 TCGA-EE-A20H-06 16 77850854 77850854 G A VAT1L Silent p.G90G 0.43 TCGA-EE-A20H-06 16 78011529 78011529 G A VAT1L Silent p.G399G 0.50 TCGA-EE-A20H-06 16 984245 984245 G A LMF1 Silent p.F171F 0.43 TCGA-EE-A20H-06 16 9857935 9857935 C T GRIN2A Missense_Mutation p.E1156K 0.43 deleterious(0.03) benign(0.026) TCGA-EE-A20H-06 17 10216538 10216538 G T MYH13 Missense_Mutation p.A1373D 0.25 deleterious(0.04) possibly_damaging(0.89) TCGA-EE-A20H-06 17 10267773 10267773 G A MYH13 Silent p.I25I 0.68 TCGA-EE-A20H-06 17 10296153 10296153 C T MYH8 Missense_Mutation p.A1820T 0.57 tolerated(0.26) benign(0.007) TCGA-EE-A20H-06 17 10399748 10399748 C T MYH1 Missense_Mutation p.R1592K 0.29 tolerated(0.21) possibly_damaging(0.863) TCGA-EE-A20H-06 17 10427780 10427780 C T MYH2 Intron 0.28 TCGA-EE-A20H-06 17 12666879 12666879 C T MYOCD Missense_Mutation p.P960L 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 17 20921418 20921418 C A USP22 Missense_Mutation p.R176L 0.51 deleterious(0) probably_damaging(0.993) TCGA-EE-A20H-06 17 21731618 21731618 C T UBBP4 3'UTR 0.18 TCGA-EE-A20H-06 17 26939359 26939359 C A SGK494 Silent p.L191L 0.56 TCGA-EE-A20H-06 17 28776659 28776659 C T CPD Missense_Mutation p.R988C 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A20H-06 17 37119224 37119224 G T FBXO47 Missense_Mutation p.R19S 0.29 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A20H-06 17 39092898 39092898 C T KRT23 5'UTR 0.23 TCGA-EE-A20H-06 17 39190680 39190680 T C KRTAP1-3 Missense_Mutation p.T132A 0.30 deleterious(0.02) benign(0.002) TCGA-EE-A20H-06 17 40063734 40063734 G A ACLY Silent p.I236I 0.27 TCGA-EE-A20H-06 17 40825991 40825991 T C PLEKHH3 Missense_Mutation p.K87E 0.64 deleterious(0) unknown(0) TCGA-EE-A20H-06 17 41003342 41003342 T G AOC3 5'UTR 0.57 TCGA-EE-A20H-06 17 42335105 42335105 G A SLC4A1 Silent p.F451F 0.34 TCGA-EE-A20H-06 17 42854579 42854579 C T ADAM11 Missense_Mutation p.T576M 0.64 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A20H-06 17 42988735 42988735 C T GFAP Silent p.E332E 0.60 TCGA-EE-A20H-06 17 45924926 45924926 G T SP6 Missense_Mutation p.F290L 0.28 deleterious(0) probably_damaging(0.989) TCGA-EE-A20H-06 17 47246907 47246907 G A B4GALNT2 Silent p.G506G 0.52 TCGA-EE-A20H-06 17 50008390 50008390 G A CA10 Missense_Mutation p.P80L 0.48 deleterious(0.05) benign(0.087) TCGA-EE-A20H-06 17 56345253 56345253 C T LPO Silent p.V679V 0.41 TCGA-EE-A20H-06 17 56582272 56582272 A C MTMR4 Silent p.A389A 0.49 TCGA-EE-A20H-06 17 61601708 61601708 C T KCNH6 Silent p.D95D 0.42 TCGA-EE-A20H-06 17 65021058 65021058 G A CACNG4 Silent p.R129R 0.45 TCGA-EE-A20H-06 17 66538260 66538260 C T FAM20A Silent p.T325T 0.19 TCGA-EE-A20H-06 17 68172103 68172103 C T KCNJ2 Missense_Mutation p.T308M 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 17 7017517 7017517 C T ASGR2 Missense_Mutation p.E15K 0.32 tolerated(0.12) probably_damaging(0.948) TCGA-EE-A20H-06 17 71166318 71166318 C T SSTR2 Missense_Mutation p.T287I 0.45 tolerated(0.06) possibly_damaging(0.806) TCGA-EE-A20H-06 17 71166319 71166319 C T SSTR2 Silent p.T287T 0.92 TCGA-EE-A20H-06 17 71166320 71166320 C T SSTR2 Missense_Mutation p.P288S 0.46 tolerated(0.23) benign(0.06) TCGA-EE-A20H-06 17 72927228 72927228 C T OTOP2 Missense_Mutation p.L500F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 17 73222188 73222188 C T NUP85 Missense_Mutation p.P344S 0.42 tolerated(0.12) benign(0.102) TCGA-EE-A20H-06 17 74081767 74081767 G A EXOC7 Missense_Mutation p.S587F 0.49 tolerated(0.06) benign(0.24) TCGA-EE-A20H-06 17 79477638 79477638 G A ACTG1 3'UTR 0.53 TCGA-EE-A20H-06 17 7989361 7989361 C T ALOX12B Missense_Mutation p.E109K 0.25 tolerated(0.85) benign(0.01) TCGA-EE-A20H-06 18 21437841 21437841 C T LAMA3 Silent p.D1390D 0.64 TCGA-EE-A20H-06 18 28660129 28660129 C T DSC2 Missense_Mutation p.E485K 0.30 tolerated(0.19) benign(0.04) TCGA-EE-A20H-06 18 28970648 28970648 G A DSG4 Missense_Mutation p.D183N 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 18 29038468 29038468 G A DSG3 Missense_Mutation p.D93N 0.59 deleterious(0.01) probably_damaging(1) TCGA-EE-A20H-06 18 29041250 29041250 G A DSG3 Missense_Mutation p.D292N 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A20H-06 18 2946308 2946308 T C LPIN2 Intron 0.59 TCGA-EE-A20H-06 18 31325319 31325319 G A ASXL3 Missense_Mutation p.G1836E 0.63 probably_damaging(1) TCGA-EE-A20H-06 18 31537398 31537398 G A NOL4 Silent p.I440I 0.23 TCGA-EE-A20H-06 18 31684052 31684052 T C NOL4 Missense_Mutation p.K200E 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A20H-06 18 33706538 33706538 G A SLC39A6 Missense_Mutation p.L145F 0.58 tolerated(0.14) benign(0.003) TCGA-EE-A20H-06 18 34647325 34647325 G A KIAA1328 Missense_Mutation p.G350E 0.44 tolerated(1) benign(0.009) TCGA-EE-A20H-06 18 34740253 34740253 G A KIAA1328 Silent p.R441R 0.40 TCGA-EE-A20H-06 18 43319582 43319582 T C SLC14A1 Missense_Mutation p.F357L 0.54 deleterious(0.03) probably_damaging(0.943) TCGA-EE-A20H-06 18 51025846 51025846 G A DCC Silent p.P1359P 0.87 TCGA-EE-A20H-06 18 60563136 60563136 T G PHLPP1 Missense_Mutation p.L779W 0.90 deleterious(0) probably_damaging(0.992) TCGA-EE-A20H-06 18 61390573 61390573 C T SERPINB11 Silent p.F373F 0.85 TCGA-EE-A20H-06 18 66721273 66721273 G A CCDC102B Missense_Mutation p.D481N 0.93 deleterious(0.02) possibly_damaging(0.682) TCGA-EE-A20H-06 18 70526078 70526078 C T NETO1 Missense_Mutation p.R151Q 0.96 tolerated(0.42) benign(0.008) TCGA-EE-A20H-06 19 10250421 10250421 G A DNMT1 Silent p.S1293S 0.69 TCGA-EE-A20H-06 19 11565663 11565663 G T ELAVL3 Missense_Mutation p.P261Q 0.58 deleterious(0) probably_damaging(0.969) TCGA-EE-A20H-06 19 11917528 11917528 C A ZNF491 Missense_Mutation p.R254S 0.60 tolerated(0.41) benign(0.031) TCGA-EE-A20H-06 19 11979568 11979568 A T ZNF439 3'UTR 0.78 TCGA-EE-A20H-06 19 13007016 13007016 C T GCDH Intron 0.61 TCGA-EE-A20H-06 19 14029983 14029983 C T CC2D1A Missense_Mutation p.A397V 0.32 tolerated(0.25) benign(0.012) TCGA-EE-A20H-06 19 16280480 16280480 C T CIB3 Silent p.K53K 0.56 TCGA-EE-A20H-06 19 17038894 17038894 A G CPAMD8 Missense_Mutation p.Y1146H 0.20 tolerated(0.67) benign(0.014) TCGA-EE-A20H-06 19 17115143 17115143 A G CPAMD8 Missense_Mutation p.F252L 0.23 tolerated(0.62) benign(0.001) TCGA-EE-A20H-06 19 17918742 17918742 G A B3GNT3 Silent p.A42A 0.74 TCGA-EE-A20H-06 19 18727819 18727819 A T TMEM59L Missense_Mutation p.I191L 0.66 tolerated(0.35) benign(0.003) TCGA-EE-A20H-06 19 19304785 19304785 C T RFXANK Silent p.L10L 0.56 TCGA-EE-A20H-06 19 2807535 2807536 - TCGAC THOP1 Frame_Shift_Ins p.G330Sfs*14 0.25 TCGA-EE-A20H-06 19 3005503 3005503 C T TLE2 Missense_Mutation p.D610N 0.57 deleterious(0) probably_damaging(0.972) TCGA-EE-A20H-06 19 33706849 33706849 G A SLC7A10 Missense_Mutation p.S61L 0.40 deleterious(0) possibly_damaging(0.901) TCGA-EE-A20H-06 19 34833128 34833128 G A KIAA0355 Silent p.Q763Q 0.66 TCGA-EE-A20H-06 19 3496633 3496633 G C DOHH Nonsense_Mutation p.Y60* 0.38 TCGA-EE-A20H-06 19 3523026 3523026 C T FZR1 Silent p.I13I 0.56 TCGA-EE-A20H-06 19 37903866 37903866 A G ZNF569 Missense_Mutation p.L565P 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 19 38200705 38200705 C T ZNF607 Missense_Mutation p.D10N 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A20H-06 19 38314522 38314522 G A CTD-2554C21.2 RNA 0.71 TCGA-EE-A20H-06 19 39691122 39691122 C T NCCRP1 Nonsense_Mutation p.Q229* 0.57 TCGA-EE-A20H-06 19 39911444 39911444 C T PLEKHG2 Missense_Mutation p.P451S 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.873) TCGA-EE-A20H-06 19 39911637 39911637 G A PLEKHG2 Splice_Site p.X483_splice 0.55 TCGA-EE-A20H-06 19 39994810 39994810 C T DLL3 Missense_Mutation p.P251L 0.32 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A20H-06 19 41383112 41383112 C T CYP2A7 Missense_Mutation p.D382N 0.66 tolerated(0.19) benign(0.01) TCGA-EE-A20H-06 19 43257446 43257446 G A PSG8 3'Flank 0.49 TCGA-EE-A20H-06 19 43414736 43414736 G A PSG6 Silent p.L234L 0.24 TCGA-EE-A20H-06 19 43523096 43523096 G A PSG11 Silent p.L179L 0.61 TCGA-EE-A20H-06 19 43708384 43708384 C T PSG4 Nonsense_Mutation p.W28* 0.64 TCGA-EE-A20H-06 19 43910622 43910622 C T TEX101 5'UTR 0.55 TCGA-EE-A20H-06 19 46005303 46005303 A G PPM1N Missense_Mutation p.N418S 0.59 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A20H-06 19 48342936 48342936 C T CRX Silent p.S204S 0.67 TCGA-EE-A20H-06 19 48657186 48657186 G A LIG1 Silent p.L137L 0.53 TCGA-EE-A20H-06 19 49937914 49937914 C T SLC17A7 Nonsense_Mutation p.W194* 0.57 TCGA-EE-A20H-06 19 50905516 50905516 C G POLD1 Missense_Mutation p.A215G 0.66 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A20H-06 19 50958854 50958854 G A MYBPC2 Missense_Mutation p.G764E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 19 50984008 50984008 C T EMC10 Silent p.T191T 0.69 TCGA-EE-A20H-06 19 51646022 51646022 G A SIGLEC7 Nonsense_Mutation p.W132* 0.31 TCGA-EE-A20H-06 19 51738439 51738439 T C CD33 Missense_Mutation p.V258A 0.57 tolerated(0.1) benign(0.043) TCGA-EE-A20H-06 19 52537165 52537165 T C ZNF432 Silent p.Q589Q 0.63 TCGA-EE-A20H-06 19 52570755 52570755 T C ZNF841 Missense_Mutation p.E127G 0.75 tolerated(0.57) benign(0.028) TCGA-EE-A20H-06 19 53058580 53058580 C T ZNF808 Missense_Mutation p.S804L 0.31 deleterious(0.03) benign(0.323) TCGA-EE-A20H-06 19 54182275 54182275 C T MIR515-1 RNA 0.60 TCGA-EE-A20H-06 19 54567128 54567128 C T VSTM1 5'UTR 0.74 TCGA-EE-A20H-06 19 55174488 55174488 G A LILRB4 Translation_Start_Site p.M1? 0.61 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-EE-A20H-06 19 55239185 55239185 T G KIR3DL3 Missense_Mutation p.L155R 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 19 55501975 55501975 G A NLRP2 Silent p.G881G 0.24 TCGA-EE-A20H-06 19 55687136 55687136 C T SYT5 Missense_Mutation p.E161K 0.72 deleterious(0) probably_damaging(0.994) TCGA-EE-A20H-06 19 55993019 55993019 C - ZNF628 Frame_Shift_Del p.K155Rfs*272 0.34 TCGA-EE-A20H-06 19 56244884 56244884 C T NLRP9 Missense_Mutation p.E105K 0.26 tolerated(0.5) benign(0.021) TCGA-EE-A20H-06 19 56297232 56297232 G A NLRP11 Missense_Mutation p.P954L 0.58 tolerated(0.24) benign(0.095) TCGA-EE-A20H-06 19 56538862 56538862 C T NLRP5 Silent p.V421V 0.21 TCGA-EE-A20H-06 19 56735102 56735102 G A ZSCAN5A Silent p.S162S 0.27 TCGA-EE-A20H-06 19 57325196 57325196 G A PEG3 Silent p.A1538A 0.24 TCGA-EE-A20H-06 19 57325197 57325197 G A PEG3 Missense_Mutation p.A1538V 0.24 tolerated(1) benign(0.004) TCGA-EE-A20H-06 19 57868434 57868434 C T ZNF304 Silent p.F399F 0.54 TCGA-EE-A20H-06 19 5831951 5831951 G A FUT6 Nonsense_Mutation p.Q210* 0.59 TCGA-EE-A20H-06 19 7913848 7913848 C T EVI5L Silent p.I123I 0.74 TCGA-EE-A20H-06 19 7925473 7925473 C T EVI5L Silent p.F467F 0.73 TCGA-EE-A20H-06 19 7965356 7965356 G A LRRC8E Missense_Mutation p.R650Q 0.21 tolerated(0.13) probably_damaging(0.978) TCGA-EE-A20H-06 19 8808605 8808605 G A ACTL9 Silent p.S149S 0.26 TCGA-EE-A20H-06 19 9046044 9046044 G A MUC16 Missense_Mutation p.P11863S 0.61 benign(0.008) TCGA-EE-A20H-06 19 9056224 9056224 C T MUC16 Missense_Mutation p.G10408R 0.29 benign(0.001) TCGA-EE-A20H-06 19 9068790 9068790 T C MUC16 Missense_Mutation p.N6219S 0.39 unknown(0) TCGA-EE-A20H-06 19 9091259 9091259 G A MUC16 Missense_Mutation p.P186S 0.29 unknown(0) TCGA-EE-A20H-06 19 9577336 9577336 T A ZNF560 Missense_Mutation p.M763L 0.60 tolerated(0.1) benign(0.004) TCGA-EE-A20H-06 1 100155290 100155290 G A PALMD Missense_Mutation p.E492K 0.82 tolerated(0.81) probably_damaging(0.931) TCGA-EE-A20H-06 1 118426147 118426147 C T GDAP2 Missense_Mutation p.D404N 0.92 tolerated(0.46) benign(0.069) TCGA-EE-A20H-06 1 13716997 13716997 G A PRAMEF17 Missense_Mutation p.E162K 0.92 tolerated(0.18) benign(0.04) TCGA-EE-A20H-06 1 154321007 154321007 C T ATP8B2 Missense_Mutation p.S1129F 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A20H-06 1 154960824 154960824 G A FLAD1 Missense_Mutation p.E206K 0.42 tolerated(0.8) benign(0.044) TCGA-EE-A20H-06 1 154987619 154987619 G C ZBTB7B Missense_Mutation p.Q195H 0.22 deleterious(0) possibly_damaging(0.891) TCGA-EE-A20H-06 1 156628431 156628431 G C BCAN Missense_Mutation p.R845P 0.93 tolerated(0.18) possibly_damaging(0.849) TCGA-EE-A20H-06 1 158517871 158517871 C T OR6Y1 Missense_Mutation p.D9N 0.17 tolerated(0.24) benign(0.019) TCGA-EE-A20H-06 1 158687796 158687796 A T OR6K3 Missense_Mutation p.F37Y 0.38 deleterious(0) probably_damaging(0.984) TCGA-EE-A20H-06 1 158724803 158724803 C T OR6K6 Silent p.I66I 0.96 TCGA-EE-A20H-06 1 167097616 167097616 G A DUSP27 Missense_Mutation p.G1083E 0.90 deleterious(0) probably_damaging(0.994) TCGA-EE-A20H-06 1 171178045 171178045 C T FMO2 Missense_Mutation p.P457S 0.92 deleterious(0) probably_damaging(0.968) TCGA-EE-A20H-06 1 173703375 173703375 C T KLHL20 Missense_Mutation p.R183C 0.54 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A20H-06 1 180165581 180165581 C T QSOX1 Silent p.A551A 0.96 TCGA-EE-A20H-06 1 183197521 183197521 A G LAMC2 Missense_Mutation p.E494G 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 1 185984530 185984530 G A HMCN1 Missense_Mutation p.A1624T 0.26 possibly_damaging(0.648) TCGA-EE-A20H-06 1 190234137 190234137 C T BRINP3 Missense_Mutation p.R159Q 0.97 tolerated(0.23) benign(0.001) TCGA-EE-A20H-06 1 196874340 196874340 G A CFHR4 Missense_Mutation p.G119E 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A20H-06 1 198701444 198701444 T C PTPRC Missense_Mutation p.F664L 0.45 deleterious(0) probably_damaging(0.984) TCGA-EE-A20H-06 1 205138811 205138811 G A DSTYK Silent p.I268I 0.45 TCGA-EE-A20H-06 1 205138813 205138813 T A DSTYK Missense_Mutation p.I268F 0.46 deleterious(0.01) benign(0.041) TCGA-EE-A20H-06 1 207737233 207737233 T C CR1 Missense_Mutation p.L1204P 0.43 tolerated(0.27) possibly_damaging(0.821) TCGA-EE-A20H-06 1 211749124 211749124 A C SLC30A1 Missense_Mutation p.L377R 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 1 222717495 222717495 C T HHIPL2 Missense_Mutation p.E120K 0.44 deleterious(0) probably_damaging(0.99) TCGA-EE-A20H-06 1 240070807 240070807 C T CHRM3 Missense_Mutation p.S19F 0.44 tolerated_low_confidence(0.71) benign(0.001) TCGA-EE-A20H-06 1 240371023 240371023 C T FMN2 Missense_Mutation p.P971S 0.40 unknown(0) TCGA-EE-A20H-06 1 240635710 240635710 G A FMN2 Missense_Mutation p.G1700E 0.49 benign(0.035) TCGA-EE-A20H-06 1 243292732 243292732 C T CEP170 Missense_Mutation p.R1448Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A20H-06 1 247473035 247473035 G A ZNF496 Silent p.L286L 0.36 TCGA-EE-A20H-06 1 248263527 248263527 C A OR2L13 Missense_Mutation p.L284I 0.14 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A20H-06 1 248263604 248263604 C T OR2L13 Silent p.F309F 0.90 TCGA-EE-A20H-06 1 27056144 27056144 A G ARID1A Silent p.P380P 0.90 TCGA-EE-A20H-06 1 29069282 29069282 G A YTHDF2 Missense_Mutation p.G167E 0.91 deleterious(0.01) probably_damaging(1) TCGA-EE-A20H-06 1 37271923 37271923 G A GRIK3 Missense_Mutation p.S699F 1.00 deleterious(0) probably_damaging(0.996) TCGA-EE-A20H-06 1 45293862 45293862 G A PTCH2 Missense_Mutation p.P571S 0.86 tolerated(0.17) benign(0.001) TCGA-EE-A20H-06 1 53580624 53580624 G A SLC1A7 Silent p.S79S 1.00 TCGA-EE-A20H-06 1 57417853 57417853 C T C8B Silent p.G178G 0.92 TCGA-EE-A20H-06 1 74507419 74507419 C T LRRIQ3 Missense_Mutation p.R399Q 0.93 tolerated(0.64) benign(0.001) TCGA-EE-A20H-06 1 79358832 79358832 G A ELTD1 Missense_Mutation p.R598C 0.97 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A20H-06 1 94982758 94982758 A C ABCD3 3'UTR 0.90 TCGA-EE-A20H-06 1 95290158 95290158 C T SLC44A3 Missense_Mutation p.A82V 0.92 tolerated(0.96) possibly_damaging(0.589) TCGA-EE-A20H-06 1 9783302 9783302 C T PIK3CD Missense_Mutation p.A849V 0.92 deleterious(0) benign(0.086) TCGA-EE-A20H-06 20 13279935 13279935 C G ISM1 Silent p.T408T 0.57 TCGA-EE-A20H-06 20 16486750 16486750 G A KIF16B Missense_Mutation p.T262I 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 20 19977443 19977443 G A RIN2 Missense_Mutation p.R823Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 20 23016462 23016462 C T SSTR4 Silent p.F114F 0.54 TCGA-EE-A20H-06 20 26094558 26094558 G A NCOR1P1 RNA 0.24 TCGA-EE-A20H-06 20 3003388 3003388 T G PTPRA Missense_Mutation p.M461R 0.54 tolerated(0.77) benign(0.092) TCGA-EE-A20H-06 20 31763249 31763249 C T BPIFA2 Silent p.S149S 0.51 TCGA-EE-A20H-06 20 35695483 35695483 G A RBL1 Missense_Mutation p.H200Y 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 20 44670039 44670039 G A SLC12A5 Missense_Mutation p.G332E 0.40 tolerated(0.5) benign(0.012) TCGA-EE-A20H-06 20 45224911 45224911 G A SLC13A3 Missense_Mutation p.R227C 0.44 deleterious(0.01) benign(0.082) TCGA-EE-A20H-06 20 47740959 47740959 C T STAU1 Missense_Mutation p.E259K 0.43 tolerated(0.1) possibly_damaging(0.665) TCGA-EE-A20H-06 20 47990040 47990040 G A KCNB1 Missense_Mutation p.P686L 0.40 deleterious_low_confidence(0.04) benign(0.136) TCGA-EE-A20H-06 20 48466142 48466142 C T SLC9A8 Silent p.S153S 0.34 TCGA-EE-A20H-06 20 51872309 51872309 A T TSHZ2 Missense_Mutation p.K771I 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 20 55212796 55212796 A G TFAP2C Silent p.K360K 0.40 TCGA-EE-A20H-06 20 57768483 57768483 G A ZNF831 Silent p.Q803Q 0.54 TCGA-EE-A20H-06 20 60485588 60485588 C T CDH4 Silent p.I433I 0.53 TCGA-EE-A20H-06 20 61537163 61537173 CCTGGACAGGC - DIDO1 Intron 0.41 TCGA-EE-A20H-06 20 61869964 61869964 C T BIRC7 Missense_Mutation p.S192F 0.42 deleterious(0.02) benign(0.386) TCGA-EE-A20H-06 20 61869965 61869965 C T BIRC7 Silent p.S192S 0.42 TCGA-EE-A20H-06 20 8717712 8717712 G A PLCB1 Missense_Mutation p.G694E 0.32 deleterious(0.03) possibly_damaging(0.87) TCGA-EE-A20H-06 20 9351894 9351894 A T PLCB4 Missense_Mutation p.E179D 0.49 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A20H-06 21 27852695 27852695 A G CYYR1 Missense_Mutation p.I77T 0.45 deleterious(0) benign(0.346) TCGA-EE-A20H-06 21 33318448 33318448 G A HUNK Silent p.R237R 0.53 TCGA-EE-A20H-06 21 34166432 34166432 C T C21orf62 Missense_Mutation p.D101N 0.41 deleterious(0.04) probably_damaging(1) TCGA-EE-A20H-06 21 39427007 39427007 A T DSCR4 Missense_Mutation p.L100H 0.44 probably_damaging(0.938) TCGA-EE-A20H-06 21 43897453 43897453 G A RSPH1 Silent p.P225P 0.40 TCGA-EE-A20H-06 21 44182282 44182282 T C PDE9A Missense_Mutation p.I392T 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 21 46047063 46047063 C T KRTAP10-9 5'UTR 0.48 TCGA-EE-A20H-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.07 TCGA-EE-A20H-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.31 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A20H-06 22 21328425 21328425 G A AIFM3 Silent p.E143E 0.32 TCGA-EE-A20H-06 22 26688735 26688735 G A SEZ6L Missense_Mutation p.G153D 0.45 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A20H-06 22 30980647 30980647 G A PES1 Silent p.F142F 0.44 TCGA-EE-A20H-06 22 31266542 31266542 G A OSBP2 Missense_Mutation p.G327D 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 22 37469593 37469593 C T TMPRSS6 Missense_Mutation p.D521N 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A20H-06 22 37491950 37491950 G A TMPRSS6 Silent p.I204I 0.42 TCGA-EE-A20H-06 22 45279178 45279178 G A PHF21B Silent p.L462L 0.38 TCGA-EE-A20H-06 22 45804690 45804690 C T SMC1B Missense_Mutation p.G67R 0.35 deleterious(0) probably_damaging(0.992) TCGA-EE-A20H-06 22 50750839 50750839 T C DENND6B Missense_Mutation p.E523G 0.37 tolerated(0.37) benign(0.028) TCGA-EE-A20H-06 2 103013101 103013101 C T IL18R1 Missense_Mutation p.H461Y 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 2 10584663 10584663 A C ODC1 Missense_Mutation p.N71K 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A20H-06 2 105858970 105858970 C T GPR45 Missense_Mutation p.L219F 0.48 deleterious(0) benign(0.006) TCGA-EE-A20H-06 2 107007411 107007411 G A PLGLA RNA 0.38 TCGA-EE-A20H-06 2 107040744 107040744 C T RGPD3 Missense_Mutation p.G1227S 0.41 tolerated(0.75) benign(0.008) TCGA-EE-A20H-06 2 108627172 108627172 A T SLC5A7 Missense_Mutation p.K533I 0.38 tolerated(0.14) benign(0.002) TCGA-EE-A20H-06 2 108627195 108627195 G A SLC5A7 Missense_Mutation p.E541K 0.31 tolerated(0.26) benign(0.074) TCGA-EE-A20H-06 2 109400092 109400092 C T RANBP2 Missense_Mutation p.S3137F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 2 113326320 113326320 C T POLR1B Intron 0.42 TCGA-EE-A20H-06 2 113675337 113675337 C T IL37 Missense_Mutation p.P131S 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A20H-06 2 120003121 120003121 A C STEAP3 Missense_Mutation p.S27R 0.50 tolerated(0.08) probably_damaging(0.969) TCGA-EE-A20H-06 2 120702669 120702669 C T PTPN4 Silent p.T456T 0.33 TCGA-EE-A20H-06 2 120702670 120702670 C T PTPN4 Missense_Mutation p.P457S 0.35 tolerated(0.77) benign(0) TCGA-EE-A20H-06 2 121726459 121726459 T C GLI2 Silent p.G271G 0.27 TCGA-EE-A20H-06 2 121745795 121745795 G A GLI2 Missense_Mutation p.E769K 0.60 tolerated(0.06) benign(0.325) TCGA-EE-A20H-06 2 128079655 128079655 A C MAP3K2 Missense_Mutation p.L338V 0.38 tolerated(0.06) benign(0.338) TCGA-EE-A20H-06 2 132021420 132021420 C T POTEE Missense_Mutation p.P798S 0.32 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-EE-A20H-06 2 136566094 136566094 C T LCT Missense_Mutation p.G1275R 0.46 deleterious(0) probably_damaging(0.987) TCGA-EE-A20H-06 2 137928455 137928455 G A THSD7B Missense_Mutation p.G557E 0.41 tolerated(0.17) probably_damaging(0.969) TCGA-EE-A20H-06 2 141130601 141130601 C T LRP1B Missense_Mutation p.E3582K 0.40 possibly_damaging(0.621) TCGA-EE-A20H-06 2 141359104 141359104 G A LRP1B Missense_Mutation p.R2302W 0.47 possibly_damaging(0.689) TCGA-EE-A20H-06 2 143676226 143676226 G A KYNU Missense_Mutation p.G73E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 2 1480956 1480956 G A TPO Silent p.G306G 0.40 TCGA-EE-A20H-06 2 148731066 148731066 A T ORC4 Missense_Mutation p.C29S 0.43 tolerated(0.08) benign(0.08) TCGA-EE-A20H-06 2 152500476 152500476 C T NEB Silent p.V2604V 0.42 TCGA-EE-A20H-06 2 155099233 155099233 G A GALNT13 Silent p.E167E 0.47 TCGA-EE-A20H-06 2 155115593 155115593 G A GALNT13 Missense_Mutation p.G306E 0.49 deleterious(0) probably_damaging(0.991) TCGA-EE-A20H-06 2 162627549 162627549 A C SLC4A10 Missense_Mutation p.K39Q 0.63 tolerated(0.13) benign(0.01) TCGA-EE-A20H-06 2 162730517 162730517 T C SLC4A10 Splice_Site p.X316_splice 0.62 TCGA-EE-A20H-06 2 163694971 163694971 G A KCNH7 Missense_Mutation p.R20W 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 2 167288995 167288995 C T SCN7A Missense_Mutation p.E809K 0.44 tolerated(0.38) possibly_damaging(0.582) TCGA-EE-A20H-06 2 168102065 168102065 G A XIRP2 Missense_Mutation p.R1388K 0.49 probably_damaging(0.999) TCGA-EE-A20H-06 2 169828445 169828445 C T ABCB11 Missense_Mutation p.R517H 0.50 deleterious(0) probably_damaging(0.982) TCGA-EE-A20H-06 2 179404420 179404420 C T TTN Missense_Mutation p.R32791K 0.45 TCGA-EE-A20H-06 2 179411907 179411907 C T TTN Missense_Mutation p.E31449K 0.48 TCGA-EE-A20H-06 2 179419596 179419596 G A TTN Silent p.I29530I 0.49 TCGA-EE-A20H-06 2 179449300 179449300 G A TTN Missense_Mutation p.P21660S 0.51 TCGA-EE-A20H-06 2 179472789 179472789 G A TTN Silent p.I17575I 0.41 TCGA-EE-A20H-06 2 179582006 179582006 G A TTN Silent p.I8485I 0.49 TCGA-EE-A20H-06 2 179582416 179582416 C T TTN Silent p.K8395K 0.47 TCGA-EE-A20H-06 2 179590695 179590695 G A TTN Missense_Mutation p.S6785L 0.41 TCGA-EE-A20H-06 2 179612857 179612857 T A TTN Intron 0.34 TCGA-EE-A20H-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.42 TCGA-EE-A20H-06 2 179665255 179665255 G A TTN Silent p.F150F 0.49 TCGA-EE-A20H-06 2 179736976 179736976 T A CCDC141 Missense_Mutation p.N655Y 0.41 deleterious(0) possibly_damaging(0.473) TCGA-EE-A20H-06 2 182322356 182322356 T G ITGA4 5'UTR 0.57 TCGA-EE-A20H-06 2 183066463 183066463 T G PDE1A Missense_Mutation p.H335P 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 2 190557145 190557145 G A ANKAR Splice_Site p.X401_splice 0.52 TCGA-EE-A20H-06 2 190921898 190921898 C T MSTN 3'UTR 0.64 TCGA-EE-A20H-06 2 196722348 196722348 G A DNAH7 Missense_Mutation p.P2723S 0.44 tolerated(0.07) possibly_damaging(0.833) TCGA-EE-A20H-06 2 197712707 197712707 A G PGAP1 Missense_Mutation p.V639A 0.47 deleterious(0) probably_damaging(0.935) TCGA-EE-A20H-06 2 20130310 20130310 T C WDR35 Missense_Mutation p.T1001A 0.38 tolerated(0.68) benign(0.004) TCGA-EE-A20H-06 2 207437857 207437857 G A ADAM23 Missense_Mutation p.E559K 0.41 tolerated(0.82) benign(0.186) TCGA-EE-A20H-06 2 210640652 210640652 C T UNC80 Missense_Mutation p.L61F 0.38 probably_damaging(0.962) TCGA-EE-A20H-06 2 21235315 21235315 C T APOB Silent p.K1475K 0.40 TCGA-EE-A20H-06 2 212426687 212426687 C T ERBB4 Missense_Mutation p.E810K 0.43 tolerated(0.05) benign(0.401) TCGA-EE-A20H-06 2 21251370 21251370 G A APOB Missense_Mutation p.S553F 0.45 possibly_damaging(0.876) TCGA-EE-A20H-06 2 213872482 213872482 C T IKZF2 Missense_Mutation p.E395K 0.49 deleterious(0.04) benign(0.146) TCGA-EE-A20H-06 2 218999511 218999511 A G CXCR2 5'UTR 0.41 TCGA-EE-A20H-06 2 222365881 222365881 C T EPHA4 Missense_Mutation p.G279R 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A20H-06 2 228118045 228118045 G A COL4A3 Missense_Mutation p.G227R 0.94 probably_damaging(1) TCGA-EE-A20H-06 2 230231656 230231656 C T DNER Missense_Mutation p.E679K 0.93 deleterious(0.01) benign(0.424) TCGA-EE-A20H-06 2 24107743 24107743 C A ATAD2B Nonsense_Mutation p.E226* 0.39 TCGA-EE-A20H-06 2 27447254 27447254 C T CAD Missense_Mutation p.P384S 0.45 tolerated(0.25) benign(0.04) TCGA-EE-A20H-06 2 28635177 28635177 C T FOSL2 Silent p.V281V 0.33 TCGA-EE-A20H-06 2 29164408 29164408 C T WDR43 Missense_Mutation p.L568F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 2 31135116 31135116 G A GALNT14 Silent p.V496V 0.45 TCGA-EE-A20H-06 2 44121759 44121759 C T LRPPRC Missense_Mutation p.V1304M 0.47 tolerated(0.15) benign(0.004) TCGA-EE-A20H-06 2 55237338 55237339 CT - RTN4 Intron 0.18 TCGA-EE-A20H-06 2 55804480 55804480 C A SMEK2 Missense_Mutation p.G526V 0.49 deleterious(0.02) benign(0.342) TCGA-EE-A20H-06 2 68882139 68882139 G A PROKR1 Missense_Mutation p.V205I 0.48 tolerated(0.29) benign(0.003) TCGA-EE-A20H-06 2 71766287 71766287 G A DYSF Nonsense_Mutation p.W498* 0.52 TCGA-EE-A20H-06 2 71892301 71892301 G A DYSF Silent p.P1728P 0.41 TCGA-EE-A20H-06 2 71896828 71896828 C T DYSF Silent p.F1912F 0.35 TCGA-EE-A20H-06 2 79363190 79363190 G A REG1P RNA 0.27 TCGA-EE-A20H-06 2 84811238 84811238 C T DNAH6 Missense_Mutation p.S782F 0.42 tolerated(0.51) benign(0.005) TCGA-EE-A20H-06 2 89309527 89309527 C T IGKV1-9 Silent p.Q101Q 0.38 TCGA-EE-A20H-06 2 89309903 89309903 G A IGKV1-9 Missense_Mutation p.P18S 0.41 tolerated(0.38) benign(0.029) TCGA-EE-A20H-06 2 97217463 97217463 C T ARID5A Missense_Mutation p.H400Y 0.43 tolerated(0.1) possibly_damaging(0.685) TCGA-EE-A20H-06 3 100986365 100986365 C T IMPG2 Missense_Mutation p.E300K 0.43 tolerated(0.17) possibly_damaging(0.82) TCGA-EE-A20H-06 3 102187870 102187870 C T ZPLD1 Missense_Mutation p.S291F 0.42 deleterious(0.01) possibly_damaging(0.845) TCGA-EE-A20H-06 3 107881304 107881304 A T IFT57 3'UTR 0.48 TCGA-EE-A20H-06 3 108107893 108107893 C T MYH15 Missense_Mutation p.G1840D 0.29 tolerated(0.12) benign(0.099) TCGA-EE-A20H-06 3 108690227 108690227 G A MORC1 Missense_Mutation p.P834S 0.37 deleterious(0.01) benign(0.098) TCGA-EE-A20H-06 3 111918210 111918210 T A SLC9C1 Missense_Mutation p.L827F 0.37 deleterious(0.05) possibly_damaging(0.736) TCGA-EE-A20H-06 3 113786847 113786847 A C QTRTD1 Silent p.S102S 0.24 TCGA-EE-A20H-06 3 118867037 118867037 C T C3orf30 Missense_Mutation p.S470L 0.39 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A20H-06 3 121641671 121641671 G A SLC15A2 Missense_Mutation p.R277Q 0.31 deleterious(0) benign(0.087) TCGA-EE-A20H-06 3 121712685 121712685 G A ILDR1 Missense_Mutation p.P304L 0.46 deleterious(0.04) benign(0.011) TCGA-EE-A20H-06 3 121712795 121712795 G A ILDR1 Silent p.L267L 0.52 TCGA-EE-A20H-06 3 12211285 12211285 G A SYN2 RNA 0.44 TCGA-EE-A20H-06 3 124149562 124149562 C T KALRN Silent p.S921S 0.42 TCGA-EE-A20H-06 3 130318651 130318651 G A COL6A6 Silent p.K1550K 0.50 TCGA-EE-A20H-06 3 137717743 137717743 C T CLDN18 Silent p.F11F 0.49 TCGA-EE-A20H-06 3 147106513 147106513 C T ZIC4 3'UTR 0.47 TCGA-EE-A20H-06 3 150404122 150404122 C T FAM194A Silent p.E191E 0.48 TCGA-EE-A20H-06 3 152553917 152553917 G A P2RY1 Missense_Mutation p.D116N 0.37 tolerated(0.81) benign(0.028) TCGA-EE-A20H-06 3 154861319 154861319 C T MME Missense_Mutation p.L426F 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A20H-06 3 15610009 15610009 C T HACL1 Missense_Mutation p.V394M 0.42 deleterious(0) benign(0.069) TCGA-EE-A20H-06 3 169574597 169574597 C T LRRC31 Missense_Mutation p.G184E 0.42 deleterious(0) probably_damaging(0.948) TCGA-EE-A20H-06 3 169663597 169663597 G A RP11-379K17.4 RNA 0.68 TCGA-EE-A20H-06 3 170108058 170108058 G A SKIL Missense_Mutation p.A493T 0.43 tolerated(0.77) benign(0.001) TCGA-EE-A20H-06 3 170150445 170150445 C T CLDN11 Silent p.I175I 0.45 TCGA-EE-A20H-06 3 172061988 172061988 C T FNDC3B Silent p.V730V 0.44 TCGA-EE-A20H-06 3 175521076 175521076 T C NAALADL2 3'UTR 0.82 TCGA-EE-A20H-06 3 179096489 179096489 C T MFN1 Nonsense_Mutation p.Q517* 0.44 TCGA-EE-A20H-06 3 183888383 183888383 C T DVL3 Missense_Mutation p.P664L 0.52 tolerated(0.43) possibly_damaging(0.908) TCGA-EE-A20H-06 3 193051605 193051605 G A ATP13A5 Silent p.I402I 0.55 TCGA-EE-A20H-06 3 195256633 195256633 A G PPP1R2 Silent p.G64G 0.43 TCGA-EE-A20H-06 3 196044977 196044977 G A TCTEX1D2 Missense_Mutation p.P16L 0.19 tolerated(0.87) benign(0) TCGA-EE-A20H-06 3 196044978 196044978 G T TCTEX1D2 Missense_Mutation p.P16T 0.19 tolerated(0.62) benign(0.002) TCGA-EE-A20H-06 3 2777941 2777941 G T CNTN4 Missense_Mutation p.S33I 0.40 tolerated(0.09) possibly_damaging(0.518) TCGA-EE-A20H-06 3 35763126 35763126 C T ARPP21 Missense_Mutation p.S308F 0.84 deleterious(0.02) possibly_damaging(0.641) TCGA-EE-A20H-06 3 38592525 38592525 C T SCN5A Missense_Mutation p.E1780K 0.87 deleterious(0) probably_damaging(0.996) TCGA-EE-A20H-06 3 38647508 38647508 G A SCN5A Silent p.I424I 0.88 TCGA-EE-A20H-06 3 38748773 38748773 G A SCN10A Silent p.P1461P 0.91 TCGA-EE-A20H-06 3 39230811 39230811 G A XIRP1 Silent p.F42F 0.95 TCGA-EE-A20H-06 3 447381 447381 C T CHL1 Missense_Mutation p.P1221L 0.60 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A20H-06 3 447382 447382 C T CHL1 Silent p.P1221P 0.60 TCGA-EE-A20H-06 3 44803216 44803216 C T KIF15 5'UTR 0.85 TCGA-EE-A20H-06 3 47374698 47374698 C T KLHL18 Missense_Mutation p.P218S 0.95 tolerated(0.78) benign(0.002) TCGA-EE-A20H-06 3 47454615 47454615 C T PTPN23 Silent p.T1617T 0.89 TCGA-EE-A20H-06 3 47454654 47454654 C T PTPN23 Silent p.L1630L 0.89 TCGA-EE-A20H-06 3 47459206 47459206 G A SCAP Missense_Mutation p.P853L 0.95 tolerated(0.23) benign(0.011) TCGA-EE-A20H-06 3 47459207 47459207 G A SCAP Missense_Mutation p.P853S 0.93 tolerated(0.56) benign(0.104) TCGA-EE-A20H-06 3 48669784 48669784 G A SLC26A6 Missense_Mutation p.S160F 0.93 deleterious(0.01) possibly_damaging(0.862) TCGA-EE-A20H-06 3 49690924 49690924 C T BSN Missense_Mutation p.T1312I 0.84 unknown(0) TCGA-EE-A20H-06 3 52412751 52412751 C T DNAH1 Silent p.S2444S 0.92 TCGA-EE-A20H-06 3 64085042 64085042 G A PRICKLE2 Silent p.S740S 0.87 TCGA-EE-A20H-06 3 78766486 78766486 G A ROBO1 Nonsense_Mutation p.R286* 0.51 TCGA-EE-A20H-06 3 85984950 85984950 C T CADM2 Missense_Mutation p.P238L 0.39 tolerated(0.27) benign(0.003) TCGA-EE-A20H-06 3 97367202 97367202 G A EPHA6 Intron 0.46 TCGA-EE-A20H-06 3 97869076 97869076 C T OR5H14 Missense_Mutation p.P283S 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A20H-06 3 98109668 98109668 A G OR5K3 Silent p.Q53Q 0.46 TCGA-EE-A20H-06 3 99514879 99514879 G A COL8A1 Missense_Mutation p.D712N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 4 100231927 100231927 C T ADH1B Silent p.G366G 0.23 TCGA-EE-A20H-06 4 115769380 115769380 C T NDST4 Missense_Mutation p.G644E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 4 122820791 122820791 A T TRPC3 Silent p.I841I 0.49 TCGA-EE-A20H-06 4 126369688 126369688 C T FAT4 Missense_Mutation p.S2506L 0.39 benign(0.009) TCGA-EE-A20H-06 4 126372388 126372388 T C FAT4 Missense_Mutation p.L3406P 0.34 possibly_damaging(0.707) TCGA-EE-A20H-06 4 126373063 126373063 G A FAT4 Missense_Mutation p.G3631E 0.36 probably_damaging(1) TCGA-EE-A20H-06 4 126408600 126408600 C T FAT4 Missense_Mutation p.T4306I 0.40 benign(0.034) TCGA-EE-A20H-06 4 138450761 138450761 C A PCDH18 Missense_Mutation p.V828F 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A20H-06 4 1389555 1389555 C T CRIPAK Missense_Mutation p.T419I 0.58 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-EE-A20H-06 4 146071980 146071980 G A OTUD4 Missense_Mutation p.S284F 0.40 tolerated(0.7) benign(0.354) TCGA-EE-A20H-06 4 147724760 147724760 C T TTC29 Missense_Mutation p.M393I 0.29 tolerated(0.47) benign(0.003) TCGA-EE-A20H-06 4 151114356 151114356 C T DCLK2 Missense_Mutation p.R275C 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 4 151505189 151505189 G A MAB21L2 Silent p.E336E 0.24 TCGA-EE-A20H-06 4 154625968 154625968 A C TLR2 Silent p.R637R 0.48 TCGA-EE-A20H-06 4 155533762 155533762 G A FGG 5'UTR 0.29 TCGA-EE-A20H-06 4 156631784 156631784 G A GUCY1A3 Missense_Mutation p.G156E 0.48 deleterious(0) probably_damaging(0.983) TCGA-EE-A20H-06 4 157999217 157999217 C T GLRB Missense_Mutation p.S14F 0.25 tolerated_low_confidence(0.08) benign(0.136) TCGA-EE-A20H-06 4 159493978 159493978 G A RXFP1 Missense_Mutation p.D60N 0.31 deleterious(0.01) benign(0.01) TCGA-EE-A20H-06 4 159533473 159533473 T A RXFP1 Silent p.I213I 0.58 TCGA-EE-A20H-06 4 164246466 164246466 C T NPY1R Missense_Mutation p.E382K 0.45 tolerated_low_confidence(0.42) benign(0.292) TCGA-EE-A20H-06 4 164272160 164272160 A T NPY5R Missense_Mutation p.K245N 0.26 tolerated(0.41) benign(0.014) TCGA-EE-A20H-06 4 164393850 164393850 G A TKTL2 Missense_Mutation p.T346M 0.51 tolerated(0.06) possibly_damaging(0.756) TCGA-EE-A20H-06 4 166405684 166405684 C T CPE Missense_Mutation p.R301C 0.42 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A20H-06 4 169374347 169374347 G A DDX60L Silent p.P308P 0.48 TCGA-EE-A20H-06 4 17528529 17528529 C T CLRN2 Missense_Mutation p.L175F 0.64 tolerated(0.29) benign(0.009) TCGA-EE-A20H-06 4 178911737 178911737 G A LINC01098 3'UTR 0.55 TCGA-EE-A20H-06 4 183245358 183245358 G A TENM3 Missense_Mutation p.R62K 0.47 tolerated_low_confidence(0.09) benign(0.22) TCGA-EE-A20H-06 4 2899946 2899946 C T ADD1 Silent p.S259S 0.34 TCGA-EE-A20H-06 4 36130312 36130312 T C ARAP2 Silent p.E1161E 0.60 TCGA-EE-A20H-06 4 39483089 39483089 C T LIAS 3'Flank 0.57 TCGA-EE-A20H-06 4 42524177 42524177 C T ATP8A1 Silent p.K649K 0.20 TCGA-EE-A20H-06 4 46060350 46060350 C T GABRG1 Missense_Mutation p.S267N 0.22 deleterious(0.01) possibly_damaging(0.56) TCGA-EE-A20H-06 4 46967121 46967121 G A GABRA4 Missense_Mutation p.L334F 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 4 47538884 47538884 C T ATP10D Missense_Mutation p.T442I 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A20H-06 4 48037767 48037767 T A NIPAL1 Missense_Mutation p.Y271N 0.24 deleterious(0.02) possibly_damaging(0.815) TCGA-EE-A20H-06 4 6083465 6083465 C T JAKMIP1 Silent p.E324E 0.72 TCGA-EE-A20H-06 4 69519764 69519764 T A UGT2B15 Missense_Mutation p.N435I 0.58 deleterious(0) probably_damaging(0.949) TCGA-EE-A20H-06 4 69535920 69535920 C T UGT2B15 Missense_Mutation p.M139I 0.29 tolerated(0.05) benign(0.009) TCGA-EE-A20H-06 4 71232674 71232674 C T SMR3A Missense_Mutation p.S123F 0.62 deleterious_low_confidence(0) unknown(0) TCGA-EE-A20H-06 4 72620797 72620797 A G GC Silent p.T373T 0.63 TCGA-EE-A20H-06 4 76529088 76529088 A C CDKL2 Silent p.A236A 0.28 TCGA-EE-A20H-06 4 77045902 77045902 G A NUP54 Missense_Mutation p.S355F 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A20H-06 4 77631396 77631396 G A SHROOM3 Silent p.R137R 0.23 TCGA-EE-A20H-06 4 90857607 90857607 G A MMRN1 Missense_Mutation p.E926K 0.57 tolerated(0.05) benign(0.016) TCGA-EE-A20H-06 5 131396672 131396672 C T IL3 Missense_Mutation p.L59F 0.91 deleterious(0.02) possibly_damaging(0.867) TCGA-EE-A20H-06 5 131607030 131607030 G C PDLIM4 Missense_Mutation p.D181H 0.91 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A20H-06 5 13754446 13754446 G A DNAH5 Missense_Mutation p.T3474I 0.38 possibly_damaging(0.803) TCGA-EE-A20H-06 5 13771068 13771068 G A DNAH5 Missense_Mutation p.S3132F 0.59 possibly_damaging(0.788) TCGA-EE-A20H-06 5 13777440 13777440 C T DNAH5 Missense_Mutation p.M2992I 0.62 benign(0.072) TCGA-EE-A20H-06 5 140257140 140257140 G A PCDHA12 Missense_Mutation p.D695N 0.90 tolerated_low_confidence(0.1) benign(0.092) TCGA-EE-A20H-06 5 140262057 140262057 C T PCDHA13 Silent p.S68S 0.89 TCGA-EE-A20H-06 5 140711920 140711920 G A PCDHGA1 Missense_Mutation p.D557N 0.90 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-EE-A20H-06 5 140720391 140720391 C T PCDHGA2 Missense_Mutation p.S618L 0.92 deleterious_low_confidence(0.05) benign(0.014) TCGA-EE-A20H-06 5 140739802 140739802 C T PCDHGB2 Missense_Mutation p.R34C 0.88 deleterious(0.02) benign(0.16) TCGA-EE-A20H-06 5 150072520 150072520 G A RBM22 Missense_Mutation p.P357S 0.91 tolerated(0.41) benign(0) TCGA-EE-A20H-06 5 150502500 150502500 G A ANXA6 Missense_Mutation p.T404I 0.95 deleterious(0) benign(0.249) TCGA-EE-A20H-06 5 154397004 154397004 G A KIF4B Silent p.S1195S 0.94 TCGA-EE-A20H-06 5 161324166 161324166 C T GABRA1 Missense_Mutation p.P370L 0.91 tolerated(0.36) benign(0.007) TCGA-EE-A20H-06 5 170720948 170720948 C T RANBP17 Missense_Mutation p.S1002F 0.43 deleterious(0) benign(0.137) TCGA-EE-A20H-06 5 173531309 173531309 G A NSG2 Missense_Mutation p.D98N 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A20H-06 5 176522718 176522718 C T FGFR4 Silent p.S605S 0.27 TCGA-EE-A20H-06 5 178294031 178294031 C T ZNF354B Missense_Mutation p.P72L 0.36 deleterious(0.01) benign(0.18) TCGA-EE-A20H-06 5 178359231 178359231 C T ZFP2 Missense_Mutation p.S306F 0.46 deleterious(0) possibly_damaging(0.745) TCGA-EE-A20H-06 5 179755283 179755283 G A GFPT2 Missense_Mutation p.A197V 0.41 tolerated(0.08) benign(0.015) TCGA-EE-A20H-06 5 19473751 19473751 C T CDH18 Missense_Mutation p.E653K 0.55 deleterious(0) possibly_damaging(0.484) TCGA-EE-A20H-06 5 19503104 19503104 C T CDH18 Missense_Mutation p.E543K 0.34 tolerated(1) possibly_damaging(0.735) TCGA-EE-A20H-06 5 23523442 23523442 G A PRDM9 Missense_Mutation p.D309N 0.36 deleterious(0.02) benign(0.013) TCGA-EE-A20H-06 5 24487656 24487656 G A CDH10 3'UTR 0.38 TCGA-EE-A20H-06 5 26903764 26903764 C T CDH9 Silent p.G327G 0.55 TCGA-EE-A20H-06 5 31799756 31799756 G A PDZD2 Missense_Mutation p.G134E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 5 35709274 35709274 C A SPEF2 Intron 0.47 TCGA-EE-A20H-06 5 39331893 39331893 G A C9 Missense_Mutation p.P167L 0.36 deleterious(0) probably_damaging(0.933) TCGA-EE-A20H-06 5 40852421 40852421 C T CARD6 Silent p.F329F 0.36 TCGA-EE-A20H-06 5 42719062 42719062 G A GHR Missense_Mutation p.D485N 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 5 42719270 42719270 C T GHR Missense_Mutation p.S554L 0.31 tolerated(0.32) possibly_damaging(0.515) TCGA-EE-A20H-06 5 42804836 42804836 G A SEPP1 Silent p.S152S 0.19 TCGA-EE-A20H-06 5 42808288 42808288 T C SEPP1 Silent p.Q56Q 0.37 TCGA-EE-A20H-06 5 67589536 67589536 G A PIK3R1 Splice_Site p.X434_splice 0.76 TCGA-EE-A20H-06 5 67589537 67589537 G A PIK3R1 Missense_Mutation p.D434N 0.76 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A20H-06 5 67589626 67589626 T G PIK3R1 Nonsense_Mutation p.Y463* 0.91 TCGA-EE-A20H-06 5 95233952 95233952 G A ELL2 Missense_Mutation p.S506F 0.86 deleterious(0.05) benign(0.007) TCGA-EE-A20H-06 6 102337537 102337537 C T GRIK2 Missense_Mutation p.P516L 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 6 10586829 10586830 - TAGTT GCNT2 Intron 0.55 TCGA-EE-A20H-06 6 112461972 112461972 G A LAMA4 Missense_Mutation p.S989F 1.00 deleterious(0) possibly_damaging(0.571) TCGA-EE-A20H-06 6 133767844 133767844 G A EYA4 Missense_Mutation p.E54K 0.81 deleterious_low_confidence(0.01) benign(0.06) TCGA-EE-A20H-06 6 138655756 138655756 T A KIAA1244 Missense_Mutation p.C1925S 0.38 tolerated(1) benign(0) TCGA-EE-A20H-06 6 138655757 138655757 G C KIAA1244 Missense_Mutation p.C1925S 0.38 tolerated(1) benign(0) TCGA-EE-A20H-06 6 158957847 158957847 C T TMEM181 Silent p.Y123Y 0.91 TCGA-EE-A20H-06 6 160496922 160496922 C A IGF2R Missense_Mutation p.A1737E 0.09 tolerated(0.25) benign(0.118) TCGA-EE-A20H-06 6 160668235 160668235 G A SLC22A2 Missense_Mutation p.S313F 0.93 tolerated(0.69) benign(0.19) TCGA-EE-A20H-06 6 16145501 16145501 C T MYLIP Missense_Mutation p.P401S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 6 24569076 24569076 G A KIAA0319 Silent p.F691F 0.23 TCGA-EE-A20H-06 6 26031832 26031832 A T HIST1H3B 3'UTR 0.22 TCGA-EE-A20H-06 6 26189118 26189118 G A HIST1H4D Silent p.L63L 0.56 TCGA-EE-A20H-06 6 26189119 26189119 G A HIST1H4D Silent p.F62F 0.55 TCGA-EE-A20H-06 6 27925668 27925668 C T OR2B6 Missense_Mutation p.S217L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 6 28474159 28474159 A T GPX6 Missense_Mutation p.L97M 0.67 deleterious(0) probably_damaging(0.998) TCGA-EE-A20H-06 6 28493858 28493858 C T GPX5 Missense_Mutation p.P23L 0.30 tolerated_low_confidence(0.89) benign(0.002) TCGA-EE-A20H-06 6 29080276 29080276 G A OR2J3 Missense_Mutation p.M203I 0.74 deleterious(0.01) benign(0.059) TCGA-EE-A20H-06 6 31747260 31747260 G A VARS Silent p.I1114I 0.62 TCGA-EE-A20H-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.35 TCGA-EE-A20H-06 6 31963847 31963847 T C C4A Missense_Mutation p.S1116P 0.28 deleterious(0.02) benign(0.227) TCGA-EE-A20H-06 6 35716668 35716668 T C ARMC12 3'UTR 0.65 TCGA-EE-A20H-06 6 39053729 39053729 C T GLP1R Silent p.H424H 0.27 TCGA-EE-A20H-06 6 41001633 41001633 G A UNC5CL Missense_Mutation p.L225F 0.60 tolerated(0.07) possibly_damaging(0.527) TCGA-EE-A20H-06 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.47 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A20H-06 6 43307297 43307297 G A ZNF318 Missense_Mutation p.P1480L 0.60 benign(0.023) TCGA-EE-A20H-06 6 44929497 44929497 T C SUPT3H Silent p.L202L 0.60 TCGA-EE-A20H-06 6 46874491 46874491 G A GPR116 Silent p.S3S 0.33 TCGA-EE-A20H-06 6 53387244 53387244 G A GCLC Silent p.L78L 0.30 TCGA-EE-A20H-06 6 54212256 54212256 C T TINAG Silent p.N280N 0.62 TCGA-EE-A20H-06 6 54254764 54254764 C T TINAG 3'UTR 0.19 TCGA-EE-A20H-06 6 6145795 6145795 C T F13A1 3'UTR 0.33 TCGA-EE-A20H-06 6 7584183 7584183 C T DSP Missense_Mutation p.P2230S 0.64 benign(0.005) TCGA-EE-A20H-06 6 75965893 75965893 G A TMEM30A Silent p.F337F 0.93 TCGA-EE-A20H-06 6 76558150 76558150 T C MYO6 Missense_Mutation p.I327T 0.98 tolerated(0.08) unknown(0) TCGA-EE-A20H-06 6 80626444 80626444 G A ELOVL4 Missense_Mutation p.P276S 0.91 tolerated(0.94) benign(0.003) TCGA-EE-A20H-06 6 90402487 90402487 G A MDN1 Missense_Mutation p.S3421L 0.94 benign(0.004) TCGA-EE-A20H-06 6 90573850 90573850 C T CASP8AP2 RNA 0.88 TCGA-EE-A20H-06 7 100468309 100468309 C T TRIP6 Missense_Mutation p.R315C 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 7 100552951 100552951 C T MUC3A Silent p.R532R 0.13 TCGA-EE-A20H-06 7 100843533 100843533 C T MOGAT3 Silent p.R90R 0.35 TCGA-EE-A20H-06 7 113522189 113522189 G A PPP1R3A Missense_Mutation p.H291Y 0.27 tolerated(0.21) benign(0.005) TCGA-EE-A20H-06 7 114282577 114282577 C T FOXP2 Silent p.S321S 0.28 TCGA-EE-A20H-06 7 121755150 121755150 C T AASS Missense_Mutation p.G341S 0.33 deleterious(0) possibly_damaging(0.763) TCGA-EE-A20H-06 7 128483367 128483367 C T FLNC Missense_Mutation p.R879C 0.40 deleterious(0) probably_damaging(0.932) TCGA-EE-A20H-06 7 128487776 128487776 G A FLNC Silent p.K1438K 0.28 TCGA-EE-A20H-06 7 131829942 131829942 C T PLXNA4 Missense_Mutation p.D1721N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 7 131831426 131831426 C T PLXNA4 Missense_Mutation p.S1633N 0.25 tolerated(0.1) probably_damaging(0.963) TCGA-EE-A20H-06 7 131866371 131866371 C T PLXNA4 Silent p.E1087E 0.24 TCGA-EE-A20H-06 7 131883255 131883255 G A PLXNA4 Silent p.I909I 0.33 TCGA-EE-A20H-06 7 132193244 132193244 C T PLXNA4 Missense_Mutation p.R70Q 0.32 deleterious(0.01) possibly_damaging(0.633) TCGA-EE-A20H-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.98 deleterious(0) probably_damaging(0.967) TCGA-EE-A20H-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.98 deleterious(0) possibly_damaging(0.838) TCGA-EE-A20H-06 7 141955396 141955396 G A PRSS58 Silent p.I46I 0.30 TCGA-EE-A20H-06 7 142131625 142131625 G A TRBV5-6 Missense_Mutation p.P44S 0.38 deleterious(0.02) benign(0.191) TCGA-EE-A20H-06 7 142168380 142168380 C T TRBV5-4 Silent p.%3D 0.24 TCGA-EE-A20H-06 7 142240017 142240017 G A TRBV9 5'UTR 0.29 TCGA-EE-A20H-06 7 142428739 142428739 G A TRBV28 Silent p.R33R 0.28 TCGA-EE-A20H-06 7 142458528 142458528 G A PRSS1 Missense_Mutation p.E55K 0.29 tolerated(0.24) benign(0.002) TCGA-EE-A20H-06 7 143792246 143792246 T A OR2A12 Missense_Mutation p.F16I 0.16 deleterious(0) possibly_damaging(0.566) TCGA-EE-A20H-06 7 143826896 143826896 G T OR2A14 Nonsense_Mutation p.E231* 0.28 TCGA-EE-A20H-06 7 144062327 144062327 C T ARHGEF5 Silent p.P855P 0.32 TCGA-EE-A20H-06 7 148703064 148703064 C T PDIA4 Missense_Mutation p.D405N 0.25 tolerated(0.23) benign(0.042) TCGA-EE-A20H-06 7 148876644 148876644 C T ZNF398 Silent p.I560I 0.24 TCGA-EE-A20H-06 7 148950971 148950971 G A ZNF212 Missense_Mutation p.C318Y 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A20H-06 7 149490679 149490679 G A SSPO RNA 0.37 TCGA-EE-A20H-06 7 150556125 150556125 C T AOC1 Silent p.I615I 0.45 TCGA-EE-A20H-06 7 20778677 20778677 A T ABCB5 Missense_Mutation p.K980I 0.11 deleterious(0) probably_damaging(0.979) TCGA-EE-A20H-06 7 21781628 21781628 C T DNAH11 Silent p.F2673F 0.33 TCGA-EE-A20H-06 7 21788221 21788221 G A DNAH11 Missense_Mutation p.R2852Q 0.38 benign(0.005) TCGA-EE-A20H-06 7 21894070 21894070 G A DNAH11 Silent p.L3740L 0.26 TCGA-EE-A20H-06 7 21948053 21948053 C T CDCA7L Missense_Mutation p.D126N 0.43 tolerated(0.39) benign(0.044) TCGA-EE-A20H-06 7 2976723 2976723 T C CARD11 Missense_Mutation p.N430S 0.39 tolerated(0.45) benign(0.002) TCGA-EE-A20H-06 7 30538442 30538442 G A GGCT Missense_Mutation p.P134S 0.19 tolerated(0.26) benign(0.183) TCGA-EE-A20H-06 7 31378592 31378592 C T NEUROD6 Silent p.Q97Q 0.14 TCGA-EE-A20H-06 7 31890332 31890332 G A PDE1C Silent p.I318I 0.14 TCGA-EE-A20H-06 7 36373679 36373679 G A KIAA0895 Silent p.P364P 0.22 TCGA-EE-A20H-06 7 36588261 36588261 C A AOAH Missense_Mutation p.A364S 0.19 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A20H-06 7 37264565 37264565 G A ELMO1 Missense_Mutation p.S207L 0.42 deleterious(0.04) possibly_damaging(0.498) TCGA-EE-A20H-06 7 42004024 42004024 C T GLI3 Silent p.A1549A 0.16 TCGA-EE-A20H-06 7 45015141 45015141 T C MYO1G Missense_Mutation p.N169S 0.43 deleterious(0.04) possibly_damaging(0.639) TCGA-EE-A20H-06 7 48522729 48522729 G A ABCA13 Missense_Mutation p.G4384E 0.39 benign(0.049) TCGA-EE-A20H-06 7 72277945 72277945 C G TYW1B Missense_Mutation p.G146A 0.14 tolerated(0.1) benign(0.414) TCGA-EE-A20H-06 7 75050949 75050949 G A POM121C Silent p.T862T 0.43 TCGA-EE-A20H-06 7 75050950 75050950 G A POM121C Missense_Mutation p.T862I 0.43 deleterious(0) benign(0.001) TCGA-EE-A20H-06 7 82582200 82582200 C T PCLO Missense_Mutation p.G2690D 0.33 unknown(0) TCGA-EE-A20H-06 7 82784917 82784917 C T PCLO Missense_Mutation p.G347E 0.42 unknown(0) TCGA-EE-A20H-06 7 83029425 83029425 C T SEMA3E Missense_Mutation p.G429R 0.42 tolerated(0.19) probably_damaging(0.951) TCGA-EE-A20H-06 7 94991760 94991760 G A PON3 Missense_Mutation p.P274S 0.36 deleterious(0.03) possibly_damaging(0.746) TCGA-EE-A20H-06 7 98513439 98513439 C T TRRAP Missense_Mutation p.R765C 0.42 probably_damaging(1) TCGA-EE-A20H-06 7 99669472 99669472 G A ZNF3 Missense_Mutation p.T212I 0.38 tolerated(0.45) probably_damaging(0.959) TCGA-EE-A20H-06 7 99799638 99799638 G A STAG3 Missense_Mutation p.D790N 0.96 tolerated(0.81) benign(0.035) TCGA-EE-A20H-06 8 106815267 106815267 G A ZFPM2 Missense_Mutation p.G986E 0.43 tolerated(0.27) possibly_damaging(0.788) TCGA-EE-A20H-06 8 107782177 107782177 G A ABRA Missense_Mutation p.S81L 0.71 tolerated(0.32) benign(0.075) TCGA-EE-A20H-06 8 110100093 110100093 G A TRHR Missense_Mutation p.A118T 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A20H-06 8 113277716 113277716 C T CSMD3 Silent p.T3204T 0.28 TCGA-EE-A20H-06 8 113308069 113308069 G A CSMD3 Silent p.S2869S 0.38 TCGA-EE-A20H-06 8 124792266 124792266 C T FAM91A1 Silent p.I197I 0.35 TCGA-EE-A20H-06 8 124982334 124982334 C A FER1L6 Silent p.I148I 0.33 TCGA-EE-A20H-06 8 139164774 139164774 C T FAM135B Silent p.L648L 0.61 TCGA-EE-A20H-06 8 139618637 139618637 G A COL22A1 Missense_Mutation p.P1364L 0.15 unknown(0) TCGA-EE-A20H-06 8 140630827 140630827 T A KCNK9 Missense_Mutation p.N267Y 0.61 deleterious(0.01) benign(0.092) TCGA-EE-A20H-06 8 144776491 144776491 C T ZNF707 Missense_Mutation p.L303F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A20H-06 8 145771133 145771133 G A ARHGAP39 Missense_Mutation p.P674L 0.42 tolerated(0.07) possibly_damaging(0.746) TCGA-EE-A20H-06 8 17401213 17401213 C T SLC7A2 Missense_Mutation p.S162L 0.38 deleterious(0) possibly_damaging(0.837) TCGA-EE-A20H-06 8 17573382 17573382 C T MTUS1 Silent p.E826E 0.32 TCGA-EE-A20H-06 8 2054311 2054311 G A MYOM2 Silent p.K974K 0.48 TCGA-EE-A20H-06 8 22058705 22058705 A G BMP1 Intron 0.52 TCGA-EE-A20H-06 8 3046465 3046465 C A CSMD1 Nonsense_Mutation p.G1823* 0.59 TCGA-EE-A20H-06 8 3205659 3205659 C T CSMD1 Missense_Mutation p.G1110E 0.15 probably_damaging(1) TCGA-EE-A20H-06 8 35402028 35402028 G A UNC5D Intron 0.63 TCGA-EE-A20H-06 8 39467034 39467034 G A ADAM18 Missense_Mutation p.E100K 0.54 deleterious(0.02) possibly_damaging(0.453) TCGA-EE-A20H-06 8 39495127 39495127 C T ADAM18 Silent p.S244S 0.26 TCGA-EE-A20H-06 8 41525791 41525791 C T ANK1 Silent p.V1837V 0.24 TCGA-EE-A20H-06 8 55537822 55537822 G A RP1 Silent p.K460K 0.53 TCGA-EE-A20H-06 8 72211931 72211931 C T EYA1 Missense_Mutation p.G194E 0.31 deleterious(0) probably_damaging(0.986) TCGA-EE-A20H-06 8 72963099 72963099 C T TRPA1 Missense_Mutation p.E607K 0.64 deleterious(0) benign(0.219) TCGA-EE-A20H-06 8 82607038 82607038 G A SLC10A5 Missense_Mutation p.S57F 0.30 deleterious(0) benign(0.115) TCGA-EE-A20H-06 8 86386594 86386594 G A CA2 Silent p.G131G 0.24 TCGA-EE-A20H-06 8 87616331 87616331 C T CNGB3 Missense_Mutation p.G591R 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A20H-06 8 91090675 91090675 C T CALB1 Missense_Mutation p.E53K 0.27 tolerated(0.31) benign(0.008) TCGA-EE-A20H-06 8 92364064 92364064 C T SLC26A7 Silent p.F389F 0.27 TCGA-EE-A20H-06 8 95709087 95709087 C T ESRP1 Missense_Mutation p.T660I 0.54 deleterious(0.01) benign(0.025) TCGA-EE-A20H-06 9 104449164 104449164 C T GRIN3A Missense_Mutation p.E340K 0.89 tolerated(0.08) benign(0.022) TCGA-EE-A20H-06 9 113163243 113163243 G A SVEP1 Missense_Mutation p.P3238L 0.89 probably_damaging(0.999) TCGA-EE-A20H-06 9 113198727 113198727 G A SVEP1 Missense_Mutation p.P1566L 0.90 probably_damaging(0.995) TCGA-EE-A20H-06 9 34521573 34521573 C T ENHO Missense_Mutation p.V41I 0.42 tolerated_low_confidence(1) benign(0) TCGA-EE-A20H-06 9 35449894 35449894 A G ATP8B5P RNA 0.80 TCGA-EE-A20H-06 9 72933761 72933761 G T SMC5 Nonsense_Mutation p.E678* 0.55 TCGA-EE-A20H-06 9 74764524 74764524 T C GDA Missense_Mutation p.F17L 1.00 tolerated(0.52) benign(0.144) TCGA-EE-A20H-06 9 88920115 88920115 G A ZCCHC6 Missense_Mutation p.S1293L 0.91 deleterious(0) probably_damaging(0.984) TCGA-EE-A20H-06 9 94172146 94172146 C T NFIL3 Missense_Mutation p.E291K 0.90 deleterious(0) probably_damaging(0.998) TCGA-EE-A20H-06 9 95608527 95608527 G A ZNF484 Nonsense_Mutation p.Q850* 0.89 TCGA-EE-A20H-06 X 115592967 115592967 C T CT83 Missense_Mutation p.E95K 0.95 deleterious(0) probably_damaging(0.981) TCGA-EE-A20H-06 X 117106695 117106695 T C KLHL13 Intron 0.91 TCGA-EE-A20H-06 X 123556329 123556329 G A TENM1 Silent p.L1422L 0.95 TCGA-EE-A20H-06 X 123785916 123785916 G A TENM1 Missense_Mutation p.S476F 0.96 tolerated(0.1) benign(0.042) TCGA-EE-A20H-06 X 125298683 125298683 C T DCAF12L2 Missense_Mutation p.G409S 0.97 deleterious(0) probably_damaging(0.995) TCGA-EE-A20H-06 X 130215550 130215550 C T ARHGAP36 5'UTR 1.00 TCGA-EE-A20H-06 X 134156473 134156473 T C FAM127C Missense_Mutation p.Q6R 0.38 tolerated(0.25) benign(0.002) TCGA-EE-A20H-06 X 135572629 135572629 C T BRS3 Missense_Mutation p.H258Y 0.95 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A20H-06 X 136649461 136649461 G A ZIC3 Missense_Mutation p.S204N 0.93 deleterious(0.05) possibly_damaging(0.628) TCGA-EE-A20H-06 X 150345178 150345178 G A GPR50 5'UTR 0.95 TCGA-EE-A20H-06 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.93 TCGA-EE-A20H-06 X 151935686 151935686 C T MAGEA3 Missense_Mutation p.V161I 0.95 tolerated(0.36) benign(0.02) TCGA-EE-A20H-06 X 17819064 17819064 G A RAI2 Missense_Mutation p.P356L 0.92 tolerated(0.57) unknown(0) TCGA-EE-A20H-06 X 31462745 31462745 C T DMD Splice_Site p.X2980_splice 0.89 TCGA-EE-A20H-06 X 3229252 3229252 C T MXRA5 Missense_Mutation p.G2331E 0.92 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A20H-06 X 3239210 3239210 T A MXRA5 Missense_Mutation p.T1506S 0.92 tolerated(0.27) benign(0.026) TCGA-EE-A20H-06 X 34149456 34149456 G A FAM47A Missense_Mutation p.R314C 0.88 tolerated(0.22) possibly_damaging(0.453) TCGA-EE-A20H-06 X 38132689 38132689 G A TM4SF2 Intron 1.00 TCGA-EE-A20H-06 X 9660253 9660253 G A TBL1X Missense_Mutation p.D284N 0.88 tolerated(0.21) benign(0.025) TCGA-EE-A20H-06 X 99551612 99551612 C T PCDH19 Missense_Mutation p.R1037K 1.00 deleterious(0.01) benign(0.021) TCGA-EE-A20I-06 10 26465722 26465722 C T MYO3A Silent p.V1462V 0.08 TCGA-EE-A20I-06 10 26465754 26465754 C T MYO3A Missense_Mutation p.S1473F 0.07 tolerated_low_confidence(0.19) benign(0.009) TCGA-EE-A20I-06 11 124793256 124793256 G A HEPACAM Silent p.A261A 0.45 TCGA-EE-A20I-06 11 33094335 33094335 G A TCP11L1 3'UTR 0.50 TCGA-EE-A20I-06 12 10962013 10962013 T C TAS2R9 Missense_Mutation p.D221G 0.48 deleterious(0) possibly_damaging(0.872) TCGA-EE-A20I-06 13 113719307 113719307 G A MCF2L Missense_Mutation p.G222R 0.62 deleterious(0) probably_damaging(0.964) TCGA-EE-A20I-06 13 49906228 49906228 T C CAB39L Splice_Site p.X231_splice 0.35 TCGA-EE-A20I-06 14 106329439 106329439 C A IGHJ6 Missense_Mutation p.W10C 0.09 benign(0.001) TCGA-EE-A20I-06 17 79409032 79409032 C T RP11-1055B8.7 Silent p.L219L 0.11 TCGA-EE-A20I-06 1 12726393 12726393 C A AADACL4 Missense_Mutation p.P291T 0.35 deleterious(0) probably_damaging(0.931) TCGA-EE-A20I-06 1 190067167 190067167 G A BRINP3 Missense_Mutation p.T761M 0.53 tolerated(0.06) possibly_damaging(0.502) TCGA-EE-A20I-06 1 226349297 226349297 C G ACBD3 Missense_Mutation p.R221S 0.76 tolerated(0.09) benign(0.227) TCGA-EE-A20I-06 1 237777500 237777500 A G RYR2 Missense_Mutation p.N1691S 0.42 benign(0.009) TCGA-EE-A20I-06 1 240255958 240255958 C A FMN2 Silent p.I183I 0.39 TCGA-EE-A20I-06 2 166866263 166866263 G T SCN1A Missense_Mutation p.P1323H 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A20I-06 2 179613495 179613495 G A TTN Intron 0.38 TCGA-EE-A20I-06 3 141497272 141497272 G A GRK7 Missense_Mutation p.R49H 0.62 deleterious(0) probably_damaging(0.912) TCGA-EE-A20I-06 3 49759540 49759540 G A GMPPB Missense_Mutation p.P270L 0.32 deleterious(0) probably_damaging(0.982) TCGA-EE-A20I-06 3 74548872 74548891 ACCAACAGGGAAAATGCTGT - CNTN3 Frame_Shift_Del p.N34Ifs*4 0.15 TCGA-EE-A20I-06 4 157688986 157688986 C G PDGFC Missense_Mutation p.C287S 0.38 tolerated(0.62) benign(0.21) TCGA-EE-A20I-06 4 160274753 160274753 T A RAPGEF2 Silent p.A1241A 0.38 TCGA-EE-A20I-06 5 135416237 135416237 A T VTRNA2-1 RNA 0.25 TCGA-EE-A20I-06 5 33989591 33989591 A T AMACR Silent p.S252S 0.33 TCGA-EE-A20I-06 5 35965978 35965978 C A UGT3A1 Missense_Mutation p.G118V 0.21 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A20I-06 5 41038885 41038885 G C MROH2B Missense_Mutation p.Q723E 0.18 tolerated(0.59) benign(0.005) TCGA-EE-A20I-06 5 41038949 41038949 G A MROH2B Silent p.V701V 0.17 TCGA-EE-A20I-06 5 41039647 41039647 G C MROH2B Missense_Mutation p.S655C 0.17 tolerated(0.4) benign(0.015) TCGA-EE-A20I-06 5 41058209 41058209 G A MROH2B Silent p.L238L 0.33 TCGA-EE-A20I-06 6 109477106 109477106 A G CEP57L1 Intron 0.67 TCGA-EE-A20I-06 6 43098054 43098054 C T PTK7 Missense_Mutation p.T194M 0.36 deleterious(0.03) benign(0.269) TCGA-EE-A20I-06 9 21974843 21974843 C G CDKN2A 5'UTR 0.39 TCGA-EE-A29A-06 10 104122406 104122406 C T GBF1 Nonsense_Mutation p.R620* 0.37 TCGA-EE-A29A-06 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29A-06 10 1041878 1041878 C T GTPBP4 Missense_Mutation p.P77S 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 10 21962686 21962686 C T MLLT10 Nonsense_Mutation p.Q487* 0.41 TCGA-EE-A29A-06 10 26534872 26534872 G A GAD2 Missense_Mutation p.G288E 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29A-06 10 28347511 28347511 A T MPP7 Nonsense_Mutation p.Y440* 0.35 TCGA-EE-A29A-06 10 38121734 38121734 G A ZNF248 Silent p.I183I 0.45 TCGA-EE-A29A-06 10 50315758 50315758 G A VSTM4 Missense_Mutation p.S113F 0.44 tolerated(0.41) benign(0.406) TCGA-EE-A29A-06 10 61844949 61844949 C T ANK3 Missense_Mutation p.D1271N 0.42 possibly_damaging(0.833) TCGA-EE-A29A-06 10 68940135 68940135 G A CTNNA3 Silent p.I329I 0.52 TCGA-EE-A29A-06 10 80968157 80968157 C T ZMIZ1 Missense_Mutation p.P42L 0.41 probably_damaging(0.991) TCGA-EE-A29A-06 10 84733611 84733611 C T NRG3 Missense_Mutation p.P451L 0.43 tolerated(0.05) benign(0.076) TCGA-EE-A29A-06 11 101342100 101342100 C G TRPC6 Missense_Mutation p.E741D 0.19 deleterious(0) benign(0.401) TCGA-EE-A29A-06 11 101375175 101375175 C T TRPC6 Silent p.R175R 0.57 TCGA-EE-A29A-06 11 101375367 101375367 G A TRPC6 Silent p.I111I 0.53 TCGA-EE-A29A-06 11 1085976 1085976 T A MUC2 Missense_Mutation p.I939N 0.32 probably_damaging(0.96) TCGA-EE-A29A-06 11 118849898 118849898 C T FOXR1 Missense_Mutation p.S123F 0.44 tolerated(0.07) benign(0.338) TCGA-EE-A29A-06 11 118849899 118849899 C T FOXR1 Silent p.S123S 0.42 TCGA-EE-A29A-06 11 119024977 119024977 G A ABCG4 Missense_Mutation p.G122R 0.24 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A29A-06 11 121358779 121358779 C T SORL1 Silent p.I189I 0.25 TCGA-EE-A29A-06 11 124189546 124189546 G A OR8D2 Missense_Mutation p.P183L 0.10 deleterious(0) possibly_damaging(0.691) TCGA-EE-A29A-06 11 17809604 17809604 G A SERGEF 3'UTR 0.42 TCGA-EE-A29A-06 11 20676362 20676362 C T SLC6A5 Missense_Mutation p.S781F 0.44 deleterious(0) possibly_damaging(0.856) TCGA-EE-A29A-06 11 20676363 20676363 C T SLC6A5 Silent p.S781S 0.43 TCGA-EE-A29A-06 11 30902757 30902757 C T DCDC1 Silent p.E1724E 0.39 TCGA-EE-A29A-06 11 31671743 31671743 T A ELP4 Missense_Mutation p.L373I 0.67 deleterious(0) probably_damaging(0.954) TCGA-EE-A29A-06 11 40136411 40136411 G A LRRC4C Missense_Mutation p.P478S 0.48 tolerated(0.07) possibly_damaging(0.902) TCGA-EE-A29A-06 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.50 TCGA-EE-A29A-06 11 55594880 55594880 C T OR5L2 Silent p.F62F 0.41 TCGA-EE-A29A-06 11 6007636 6007636 G A OR52L1 Silent p.I175I 0.40 TCGA-EE-A29A-06 11 62415320 62415320 C G INTS5 Silent p.G744G 0.42 TCGA-EE-A29A-06 11 62415321 62415321 C T INTS5 Missense_Mutation p.G744E 0.42 tolerated(0.17) possibly_damaging(0.6) TCGA-EE-A29A-06 11 63884758 63884758 G A FLRT1 Missense_Mutation p.R340Q 0.30 tolerated(0.29) benign(0.154) TCGA-EE-A29A-06 11 63884759 63884759 G A FLRT1 Silent p.R340R 0.27 TCGA-EE-A29A-06 11 66061887 66061887 C T TMEM151A Missense_Mutation p.A57V 0.55 tolerated(0.07) benign(0.11) TCGA-EE-A29A-06 11 66102509 66102509 G A RIN1 Missense_Mutation p.S254F 0.39 deleterious(0) possibly_damaging(0.878) TCGA-EE-A29A-06 11 72288318 72288318 G A PDE2A 3'UTR 0.52 TCGA-EE-A29A-06 11 75299108 75299108 C T MAP6 Missense_Mutation p.E480K 0.46 tolerated_low_confidence(0.06) possibly_damaging(0.681) TCGA-EE-A29A-06 11 76814343 76814343 A T OMP Missense_Mutation p.N153I 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-EE-A29A-06 11 78440627 78440627 C T TENM4 Missense_Mutation p.R1067Q 0.42 deleterious(0) possibly_damaging(0.82) TCGA-EE-A29A-06 11 92534326 92534326 C T FAT3 Missense_Mutation p.T2716I 0.41 benign(0.003) TCGA-EE-A29A-06 11 99786873 99786873 A C CNTN5 Missense_Mutation p.H222P 0.12 deleterious(0) possibly_damaging(0.784) TCGA-EE-A29A-06 12 106461156 106461156 C T NUAK1 Silent p.K470K 0.53 TCGA-EE-A29A-06 12 109186226 109186226 G A SSH1 Missense_Mutation p.P577S 0.44 tolerated_low_confidence(0.11) benign(0.011) TCGA-EE-A29A-06 12 113873216 113873216 G A SDSL Missense_Mutation p.G176R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 12 129294521 129294521 C G SLC15A4 Missense_Mutation p.L326F 0.45 tolerated(0.16) benign(0.071) TCGA-EE-A29A-06 12 16036573 16036573 G A STRAP Missense_Mutation p.A71T 0.28 deleterious(0.04) probably_damaging(0.953) TCGA-EE-A29A-06 12 21015417 21015417 G A SLCO1B3 Missense_Mutation p.E185K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 12 21797036 21797036 G A LDHB Missense_Mutation p.S85F 0.43 tolerated(0.05) probably_damaging(0.954) TCGA-EE-A29A-06 12 2666141 2666141 C T CACNA1C Silent p.F502F 0.40 TCGA-EE-A29A-06 12 2788894 2788894 G A CACNA1C Silent p.E1840E 0.50 TCGA-EE-A29A-06 12 29640654 29640654 C T OVCH1 Missense_Mutation p.M288I 0.40 deleterious(0.04) benign(0.436) TCGA-EE-A29A-06 12 47182355 47182355 C T SLC38A4 Missense_Mutation p.G56R 0.28 deleterious(0.03) possibly_damaging(0.756) TCGA-EE-A29A-06 12 51707644 51707644 C T BIN2 Missense_Mutation p.R42Q 0.33 tolerated(1) benign(0.094) TCGA-EE-A29A-06 12 56380707 56380707 C T RAB5B 5'UTR 0.31 TCGA-EE-A29A-06 12 57865615 57865615 G A GLI1 Missense_Mutation p.G1031E 0.39 tolerated(0.49) probably_damaging(1) TCGA-EE-A29A-06 12 58152034 58152034 C T MARCH9 Silent p.L219L 0.35 TCGA-EE-A29A-06 12 59272672 59272672 C A LRIG3 Missense_Mutation p.V673L 0.27 deleterious(0.04) possibly_damaging(0.649) TCGA-EE-A29A-06 12 7966767 7966767 G T SLC2A14 3'UTR 0.42 TCGA-EE-A29A-06 12 79679682 79679682 G A SYT1 Silent p.K94K 0.35 TCGA-EE-A29A-06 12 81536910 81536910 C T ACSS3 Missense_Mutation p.R269C 0.30 deleterious(0.01) benign(0.024) TCGA-EE-A29A-06 13 110850940 110850940 G A COL4A1 Missense_Mutation p.P387S 0.28 unknown(0) TCGA-EE-A29A-06 13 24892958 24892958 G A C1QTNF9 Missense_Mutation p.E57K 0.58 tolerated(0.55) probably_damaging(0.936) TCGA-EE-A29A-06 13 70281924 70281924 C T KLHL1 Missense_Mutation p.D674N 0.66 tolerated(0.14) possibly_damaging(0.85) TCGA-EE-A29A-06 13 86370413 86370413 C T SLITRK6 Silent p.T77T 0.31 TCGA-EE-A29A-06 14 102483220 102483220 G A DYNC1H1 Missense_Mutation p.E2578K 0.52 probably_damaging(0.947) TCGA-EE-A29A-06 14 103871440 103871440 G A MARK3 Missense_Mutation p.E27K 0.40 tolerated(0.37) benign(0.201) TCGA-EE-A29A-06 14 106204156 106204156 C T IGHG1 Silent p.V381V 0.24 TCGA-EE-A29A-06 14 106405797 106405797 G A IGHV6-1 Silent p.I59I 0.39 TCGA-EE-A29A-06 14 20404445 20404445 C T OR4K1 Missense_Mutation p.S207L 0.40 deleterious(0) possibly_damaging(0.794) TCGA-EE-A29A-06 14 21560062 21560062 G C ZNF219 Missense_Mutation p.S465C 0.13 deleterious(0.01) benign(0.124) TCGA-EE-A29A-06 14 24620799 24620799 C T RNF31 Nonsense_Mutation p.Q615* 0.32 TCGA-EE-A29A-06 14 31058628 31058628 G A G2E3 Missense_Mutation p.E59K 0.37 deleterious(0) probably_damaging(0.974) TCGA-EE-A29A-06 14 38724523 38724523 C T CLEC14A Nonsense_Mutation p.W235* 0.41 TCGA-EE-A29A-06 14 70527578 70527578 C T SLC8A3 Silent p.P621P 0.37 TCGA-EE-A29A-06 14 94394732 94394732 C T FAM181A Missense_Mutation p.S96F 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 15 22369004 22369004 C T OR4M2 Silent p.I143I 0.12 TCGA-EE-A29A-06 15 23261104 23261104 C T GOLGA8I Missense_Mutation p.S260L 0.36 deleterious(0.05) benign(0.013) TCGA-EE-A29A-06 15 33359296 33359296 C T FMN1 Missense_Mutation p.E264K 0.43 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29A-06 15 38228518 38228518 G A TMCO5A 5'UTR 0.36 TCGA-EE-A29A-06 15 59009911 59009911 G A ADAM10 Missense_Mutation p.P24L 0.26 tolerated(0.06) possibly_damaging(0.805) TCGA-EE-A29A-06 15 81241110 81241110 G T KIAA1199 Intron 0.41 TCGA-EE-A29A-06 15 89073889 89073889 C T DET1 Missense_Mutation p.D361N 0.22 deleterious(0) possibly_damaging(0.765) TCGA-EE-A29A-06 16 11846620 11846620 G A ZC3H7A Silent p.S877S 0.43 TCGA-EE-A29A-06 16 1545502 1545502 C T TELO2 Missense_Mutation p.P164L 0.58 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 16 1545503 1545503 C T TELO2 Silent p.P164P 0.61 TCGA-EE-A29A-06 16 28913196 28913196 G A ATP2A1 Missense_Mutation p.V705I 0.59 deleterious(0.01) benign(0.197) TCGA-EE-A29A-06 16 30410306 30410306 G A ZNF48 Missense_Mutation p.G579S 0.39 tolerated(0.34) possibly_damaging(0.75) TCGA-EE-A29A-06 16 31087996 31087996 C T ZNF646 Silent p.L117L 0.38 TCGA-EE-A29A-06 16 33020700 33020700 C T IGHV3OR16-8 Silent p.S36S 0.35 TCGA-EE-A29A-06 16 58073885 58073885 C T MMP15 Missense_Mutation p.P183S 0.33 tolerated(0.06) benign(0.03) TCGA-EE-A29A-06 16 58612679 58612679 A C CNOT1 Missense_Mutation p.I503S 0.44 deleterious(0) benign(0.424) TCGA-EE-A29A-06 16 67223040 67223040 C T EXOC3L1 Silent p.R30R 0.33 TCGA-EE-A29A-06 16 67694403 67694403 C T ACD 5'UTR 0.42 TCGA-EE-A29A-06 16 68389640 68389640 C T PRMT7 Silent p.F555F 0.21 TCGA-EE-A29A-06 16 70896141 70896141 G A HYDIN Nonsense_Mutation p.Q3863* 0.47 TCGA-EE-A29A-06 16 74496465 74496465 C T GLG1 Missense_Mutation p.G952D 0.31 tolerated(0.49) benign(0.004) TCGA-EE-A29A-06 16 76461454 76461454 G A CNTNAP4 Missense_Mutation p.G141S 0.43 deleterious(0.03) possibly_damaging(0.856) TCGA-EE-A29A-06 16 84767063 84767063 C T USP10 Missense_Mutation p.P15L 0.29 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-EE-A29A-06 16 9858028 9858028 C T GRIN2A Missense_Mutation p.E1125K 0.48 tolerated(0.26) possibly_damaging(0.676) TCGA-EE-A29A-06 17 10399635 10399635 C T MYH1 Missense_Mutation p.E1630K 0.52 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A29A-06 17 10419519 10419519 G A MYH1 Silent p.I115I 0.40 TCGA-EE-A29A-06 17 1564924 1564924 C T PRPF8 Missense_Mutation p.E1395K 0.43 deleterious(0.04) possibly_damaging(0.78) TCGA-EE-A29A-06 17 16340149 16340149 G A TRPV2 Silent p.E747E 0.33 TCGA-EE-A29A-06 17 17797059 17797059 G A TOM1L2 Silent p.F94F 0.41 TCGA-EE-A29A-06 17 26925993 26925993 C T SPAG5 5'UTR 0.33 TCGA-EE-A29A-06 17 28544223 28544223 G A SLC6A4 Silent p.I266I 0.42 TCGA-EE-A29A-06 17 33904984 33904984 G A PEX12 Silent p.S19S 0.43 TCGA-EE-A29A-06 17 33904985 33904985 G A PEX12 Missense_Mutation p.S19F 0.44 deleterious(0) probably_damaging(0.91) TCGA-EE-A29A-06 17 36478143 36478143 C T MRPL45 Silent p.I265I 0.35 TCGA-EE-A29A-06 17 39967158 39967158 G T LEPREL4 Silent p.A248A 0.50 TCGA-EE-A29A-06 17 48917466 48917466 G A WFIKKN2 Missense_Mutation p.V273I 0.58 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29A-06 17 5049436 5049436 C T USP6 Silent p.I762I 0.35 TCGA-EE-A29A-06 17 54940191 54940191 G A DGKE 3'UTR 0.19 TCGA-EE-A29A-06 17 56385969 56385969 C A BZRAP1 Missense_Mutation p.W1555L 0.46 deleterious(0.03) benign(0.012) TCGA-EE-A29A-06 17 57057398 57057398 G A PPM1E Missense_Mutation p.G425E 0.36 deleterious(0.05) probably_damaging(1) TCGA-EE-A29A-06 17 7400322 7400322 C T POLR2A Silent p.S259S 0.65 TCGA-EE-A29A-06 17 76450757 76450757 G A DNAH17 Missense_Mutation p.P3387S 0.36 possibly_damaging(0.477) TCGA-EE-A29A-06 17 7752119 7752119 C T KDM6B Missense_Mutation p.S838F 0.40 possibly_damaging(0.683) TCGA-EE-A29A-06 17 78178894 78178894 G C CARD14 Missense_Mutation p.R820P 0.31 tolerated(0.11) benign(0.271) TCGA-EE-A29A-06 17 79618074 79618074 G A PDE6G 3'UTR 0.37 TCGA-EE-A29A-06 17 79650840 79650840 C T ARL16 Missense_Mutation p.G6R 0.46 deleterious_low_confidence(0) benign(0) TCGA-EE-A29A-06 18 34415210 34415210 A G KIAA1328 Silent p.E36E 0.59 TCGA-EE-A29A-06 18 43319189 43319189 G A SLC14A1 Missense_Mutation p.G298E 0.49 deleterious(0) probably_damaging(0.997) TCGA-EE-A29A-06 18 43432602 43432602 G A EPG5 Missense_Mutation p.L2524F 0.33 deleterious(0) probably_damaging(0.986) TCGA-EE-A29A-06 18 56008975 56008975 C T NEDD4L Silent p.I441I 0.42 TCGA-EE-A29A-06 18 56008976 56008976 C T NEDD4L Missense_Mutation p.R442C 0.42 deleterious(0.05) possibly_damaging(0.794) TCGA-EE-A29A-06 19 1041569 1041569 C T ABCA7 Missense_Mutation p.R43C 0.44 deleterious(0) probably_damaging(0.934) TCGA-EE-A29A-06 19 15276800 15276800 G A NOTCH3 Missense_Mutation p.S1822F 0.25 deleterious(0) probably_damaging(0.985) TCGA-EE-A29A-06 19 17892342 17892342 G A FCHO1 Missense_Mutation p.G608R 0.41 tolerated(0.11) possibly_damaging(0.746) TCGA-EE-A29A-06 19 18193075 18193075 C T IL12RB1 Splice_Site p.X42_splice 0.37 TCGA-EE-A29A-06 19 18679426 18679426 G A KXD1 Silent p.E172E 0.55 TCGA-EE-A29A-06 19 41442409 41442409 G A CYP2B7P RNA 0.40 TCGA-EE-A29A-06 19 43359829 43359829 C T PSG10P 5'Flank 0.38 TCGA-EE-A29A-06 19 43383679 43383679 G A PSG1 Silent p.L19L 0.40 TCGA-EE-A29A-06 19 47969002 47969002 G A SLC8A2 Missense_Mutation p.S220F 0.55 deleterious(0) probably_damaging(0.984) TCGA-EE-A29A-06 19 48517439 48517439 G A ELSPBP1 Missense_Mutation p.E28K 0.35 tolerated(0.11) benign(0.002) TCGA-EE-A29A-06 19 49657828 49657828 C T HRC Missense_Mutation p.E223K 0.34 tolerated(0.13) possibly_damaging(0.829) TCGA-EE-A29A-06 19 52272052 52272052 G A FPR2 Silent p.V47V 0.38 TCGA-EE-A29A-06 19 53572028 53572028 G A ZNF160 Missense_Mutation p.H587Y 0.30 deleterious(0.01) possibly_damaging(0.751) TCGA-EE-A29A-06 19 55707890 55707890 C T PTPRH Missense_Mutation p.G753R 0.33 probably_damaging(0.982) TCGA-EE-A29A-06 19 56244384 56244384 G A NLRP9 Silent p.L271L 0.40 TCGA-EE-A29A-06 19 58596361 58596361 G A ZSCAN18 Silent p.S464S 0.50 TCGA-EE-A29A-06 19 9063944 9063944 C T MUC16 Silent p.R7834R 0.43 TCGA-EE-A29A-06 19 9070509 9070509 G A MUC16 Missense_Mutation p.S5646F 0.42 unknown(0) TCGA-EE-A29A-06 19 9084874 9084874 C T MUC16 Missense_Mutation p.G2314E 0.52 unknown(0) TCGA-EE-A29A-06 1 101705320 101705320 C T S1PR1 Silent p.I260I 0.50 TCGA-EE-A29A-06 1 109472319 109472319 C T GPSM2 Intron 0.39 TCGA-EE-A29A-06 1 111060906 111060906 G A KCNA10 Silent p.F168F 0.49 TCGA-EE-A29A-06 1 119965160 119965160 G A HSD3B2 Missense_Mutation p.E346K 0.51 deleterious(0.02) probably_damaging(0.977) TCGA-EE-A29A-06 1 120468252 120468252 G A NOTCH2 Missense_Mutation p.P1396L 0.37 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29A-06 1 120468253 120468253 G A NOTCH2 Missense_Mutation p.P1396S 0.37 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29A-06 1 12337851 12337851 G A VPS13D Silent p.L1402L 0.42 TCGA-EE-A29A-06 1 13001364 13001364 C T PRAMEF6 Missense_Mutation p.D107N 0.13 tolerated(1) benign(0.034) TCGA-EE-A29A-06 1 147380904 147380904 C T GJA8 Silent p.I274I 0.32 TCGA-EE-A29A-06 1 156105804 156105804 C T LMNA Missense_Mutation p.A350V 0.38 tolerated(0.28) benign(0.425) TCGA-EE-A29A-06 1 15789319 15789319 G A CELA2A Missense_Mutation p.V107M 0.39 deleterious(0) possibly_damaging(0.767) TCGA-EE-A29A-06 1 158686994 158686994 G A OR6K3 Silent p.F304F 0.35 TCGA-EE-A29A-06 1 159284004 159284004 G A OR10J3 Missense_Mutation p.S149L 0.45 deleterious(0.03) possibly_damaging(0.542) TCGA-EE-A29A-06 1 161022309 161022309 C T ARHGAP30 Silent p.R287R 0.39 TCGA-EE-A29A-06 1 1670360 1670360 C T SLC35E2 Splice_Site p.X153_splice 0.25 TCGA-EE-A29A-06 1 167097626 167097626 G A DUSP27 Silent p.R1086R 0.41 TCGA-EE-A29A-06 1 16952963 16952963 G A CROCCP2 3'Flank 0.17 TCGA-EE-A29A-06 1 171560901 171560901 C T PRRC2C Missense_Mutation p.P2790L 0.36 possibly_damaging(0.651) TCGA-EE-A29A-06 1 201046174 201046174 G A CACNA1S Silent p.F567F 0.44 TCGA-EE-A29A-06 1 212515562 212515562 G A PPP2R5A Silent p.E171E 0.37 TCGA-EE-A29A-06 1 24669432 24669432 C T GRHL3 Missense_Mutation p.L446F 0.43 tolerated(1) probably_damaging(0.983) TCGA-EE-A29A-06 1 27099360 27099360 C T ARID1A Silent p.F1199F 0.46 TCGA-EE-A29A-06 1 27099361 27099361 C T ARID1A Nonsense_Mutation p.Q1200* 0.46 TCGA-EE-A29A-06 1 35580024 35580024 C T ZMYM1 Silent p.L865L 0.43 TCGA-EE-A29A-06 1 36557548 36557548 C T ADPRHL2 Missense_Mutation p.S185F 0.36 deleterious(0.02) benign(0.432) TCGA-EE-A29A-06 1 45244122 45244122 C T RPS8 Intron 0.39 TCGA-EE-A29A-06 1 50957438 50957439 CT - FAF1 Frame_Shift_Del p.E510Afs*3 0.20 TCGA-EE-A29A-06 1 51869204 51869204 C T EPS15 Missense_Mutation p.A560T 0.31 tolerated(0.54) benign(0.011) TCGA-EE-A29A-06 1 52962697 52962697 A - ZCCHC11 Frame_Shift_Del p.I387* 0.27 TCGA-EE-A29A-06 1 5947473 5947473 G A NPHP4 Silent p.V786V 0.44 TCGA-EE-A29A-06 1 6659204 6659204 C T KLHL21 Missense_Mutation p.D444N 0.44 tolerated(0.14) benign(0.006) TCGA-EE-A29A-06 1 85279509 85279509 G A LPAR3 3'UTR 0.41 TCGA-EE-A29A-06 1 99771243 99771244 - TT LPPR4 Frame_Shift_Ins p.L324Ffs*25 0.29 TCGA-EE-A29A-06 20 23335103 23335103 G C NXT1 3'UTR 0.38 TCGA-EE-A29A-06 20 42169606 42169606 G A L3MBTL1 Silent p.G787G 0.28 TCGA-EE-A29A-06 20 44515315 44515315 C T SPATA25 Silent p.E175E 0.61 TCGA-EE-A29A-06 20 44869728 44869728 G A CDH22 Missense_Mutation p.R142C 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 20 45353909 45353909 C T SLC2A10 Silent p.I78I 0.36 TCGA-EE-A29A-06 21 10920164 10920164 C T TPTE Missense_Mutation p.E364K 0.06 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A29A-06 21 41516578 41516578 G A DSCAM Silent p.F1033F 0.60 TCGA-EE-A29A-06 21 45213219 45213219 C T RRP1 Silent p.A98A 0.27 TCGA-EE-A29A-06 22 19420819 19420819 G A MRPL40 Missense_Mutation p.E29K 0.43 tolerated(0.73) benign(0.009) TCGA-EE-A29A-06 22 24622608 24622608 C T GGT5 Silent p.P343P 0.55 TCGA-EE-A29A-06 22 26423254 26423254 A C MYO18B Missense_Mutation p.K2438N 0.36 tolerated(0.34) benign(0.2) TCGA-EE-A29A-06 22 29182409 29182409 G A CCDC117 3'UTR 0.50 TCGA-EE-A29A-06 22 30887843 30887843 G A SEC14L4 Silent p.L297L 0.42 TCGA-EE-A29A-06 22 36113929 36113929 G A APOL5 Missense_Mutation p.G4D 0.59 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EE-A29A-06 22 38757558 38757558 C T RP3-449O17.1 RNA 0.50 TCGA-EE-A29A-06 22 38934376 38934376 G A DMC1 Silent p.F233F 0.50 TCGA-EE-A29A-06 22 38934377 38934377 A T DMC1 Missense_Mutation p.F233Y 0.51 tolerated(1) benign(0.044) TCGA-EE-A29A-06 22 39122010 39122010 G A GTPBP1 Splice_Site p.X358_splice 0.36 TCGA-EE-A29A-06 22 42793927 42793927 C T NFAM1 Silent p.R200R 0.38 TCGA-EE-A29A-06 22 45798262 45798262 C T SMC1B Missense_Mutation p.E269K 0.29 tolerated(0.05) benign(0.419) TCGA-EE-A29A-06 22 45798263 45798263 C T SMC1B Silent p.K268K 0.29 TCGA-EE-A29A-06 2 103335015 103335015 G A MFSD9 Missense_Mutation p.S430L 0.38 deleterious(0) probably_damaging(0.921) TCGA-EE-A29A-06 2 103353173 103353173 C T MFSD9 Missense_Mutation p.E33K 0.66 tolerated_low_confidence(0.78) benign(0.002) TCGA-EE-A29A-06 2 103353174 103353174 C T MFSD9 Silent p.A32A 0.66 TCGA-EE-A29A-06 2 107423199 107423199 C T ST6GAL2 Missense_Mutation p.V509M 0.55 probably_damaging(0.986) TCGA-EE-A29A-06 2 113416627 113416628 - C SLC20A1 Frame_Shift_Ins p.V336Rfs*11 0.20 TCGA-EE-A29A-06 2 120125788 120125788 G A DBI Missense_Mutation p.E73K 0.56 tolerated(0.14) possibly_damaging(0.549) TCGA-EE-A29A-06 2 121745822 121745822 G A GLI2 Missense_Mutation p.G778R 0.60 tolerated(0.1) benign(0.026) TCGA-EE-A29A-06 2 128938530 128938530 C T UGGT1 Missense_Mutation p.R1323W 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 2 130737709 130737709 C T RAB6C Silent p.F7F 0.33 TCGA-EE-A29A-06 2 131519903 131519903 C T AMER3 Silent p.F86F 0.55 TCGA-EE-A29A-06 2 137814319 137814319 G A THSD7B Missense_Mutation p.E157K 0.27 tolerated(0.52) benign(0.316) TCGA-EE-A29A-06 2 167168163 167168163 G T SCN9A Missense_Mutation p.P35H 0.27 tolerated(0.08) benign(0.015) TCGA-EE-A29A-06 2 179594029 179594029 C G TTN Missense_Mutation p.R6285T 0.55 TCGA-EE-A29A-06 2 179600389 179600389 G A TTN Silent p.L4928L 0.61 TCGA-EE-A29A-06 2 182339762 182339762 C T ITGA4 Missense_Mutation p.S132F 0.29 deleterious(0.02) benign(0.059) TCGA-EE-A29A-06 2 200213622 200213622 C T SATB2 Silent p.R325R 0.15 TCGA-EE-A29A-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-EE-A29A-06 2 216904055 216904055 C T PECR Silent p.G285G 0.33 TCGA-EE-A29A-06 2 228883081 228883081 G A SPHKAP Missense_Mutation p.S830F 0.32 deleterious(0) benign(0.057) TCGA-EE-A29A-06 2 26534719 26534719 G A GPR113 Missense_Mutation p.S626F 0.52 deleterious(0) probably_damaging(0.974) TCGA-EE-A29A-06 2 42281233 42281233 G A PKDCC Missense_Mutation p.V274I 0.16 tolerated(0.27) benign(0.172) TCGA-EE-A29A-06 2 49191042 49191042 C T FSHR Silent p.Q306Q 0.27 TCGA-EE-A29A-06 2 60688589 60688589 C T BCL11A Silent p.E486E 0.54 TCGA-EE-A29A-06 2 75108959 75108959 G A HK2 Silent p.Q564Q 0.38 TCGA-EE-A29A-06 2 89987048 89987048 T A IGKV2D-29 Missense_Mutation p.V110D 0.05 tolerated(0.17) benign(0.198) TCGA-EE-A29A-06 2 90199118 90199118 C T IGKV1D-12 Silent p.F93F 0.23 TCGA-EE-A29A-06 3 140265476 140265476 G A CLSTN2 Missense_Mutation p.E543K 0.39 deleterious(0) probably_damaging(0.992) TCGA-EE-A29A-06 3 167023494 167023494 C T ZBBX Silent p.L554L 0.42 TCGA-EE-A29A-06 3 180322733 180322733 C T TTC14 Silent p.F265F 0.37 TCGA-EE-A29A-06 3 19491795 19491795 G A KCNH8 Missense_Mutation p.E525K 0.41 deleterious(0) possibly_damaging(0.472) TCGA-EE-A29A-06 3 36893786 36893786 G A TRANK1 Missense_Mutation p.P1490S 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 3 41277853 41277853 C T CTNNB1 Missense_Mutation p.P606L 0.41 tolerated(0.11) benign(0.098) TCGA-EE-A29A-06 3 46874578 46874578 G A PRSS42 Nonsense_Mutation p.R164* 0.40 TCGA-EE-A29A-06 3 48613849 48613849 C T COL7A1 Missense_Mutation p.G1919E 0.48 unknown(0) TCGA-EE-A29A-06 3 49753392 49753392 C T RNF123 Silent p.F1096F 0.42 TCGA-EE-A29A-06 3 49753393 49753393 C T RNF123 Missense_Mutation p.L1097F 0.42 tolerated(0.06) probably_damaging(0.965) TCGA-EE-A29A-06 3 52475703 52475703 C T SEMA3G Missense_Mutation p.G185E 0.32 tolerated(0.38) probably_damaging(0.985) TCGA-EE-A29A-06 4 110662237 110662237 T A CFI Nonsense_Mutation p.K522* 0.40 TCGA-EE-A29A-06 4 115891717 115891717 C T NDST4 Missense_Mutation p.D364N 0.61 deleterious(0) probably_damaging(0.992) TCGA-EE-A29A-06 4 126389861 126389861 G A FAT4 Missense_Mutation p.E4032K 0.50 benign(0.002) TCGA-EE-A29A-06 4 144826669 144826669 C T GYPE 5'UTR 0.33 TCGA-EE-A29A-06 4 146807227 146807227 G A ZNF827 Silent p.L450L 0.64 TCGA-EE-A29A-06 4 156136099 156136099 C T NPY2R Silent p.F336F 0.33 TCGA-EE-A29A-06 4 164247100 164247100 G A NPY1R Missense_Mutation p.P203S 0.38 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A29A-06 4 164271957 164271957 C T NPY5R Missense_Mutation p.H178Y 0.48 tolerated(0.32) benign(0.237) TCGA-EE-A29A-06 4 164394716 164394716 C T TKTL2 Missense_Mutation p.M57I 0.53 deleterious(0) probably_damaging(0.92) TCGA-EE-A29A-06 4 1742647 1742647 G A TACC3 Silent p.E719E 0.43 TCGA-EE-A29A-06 4 2933366 2933366 G A MFSD10 Silent p.F313F 0.53 TCGA-EE-A29A-06 4 40440476 40440476 G A RBM47 Silent p.C145C 0.47 TCGA-EE-A29A-06 4 42602500 42602500 C T ATP8A1 Missense_Mutation p.E149K 0.42 tolerated(1) probably_damaging(0.995) TCGA-EE-A29A-06 4 46066470 46066470 C T GABRG1 Missense_Mutation p.E205K 0.46 tolerated(1) probably_damaging(0.949) TCGA-EE-A29A-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.41 tolerated(0.48) benign(0.199) TCGA-EE-A29A-06 4 48139365 48139365 A G TEC 3'UTR 0.50 TCGA-EE-A29A-06 4 55564559 55564559 G A KIT Silent p.K149K 0.44 TCGA-EE-A29A-06 4 55961074 55961074 G A KDR Missense_Mutation p.P956S 0.31 tolerated(0.78) benign(0.001) TCGA-EE-A29A-06 4 65275100 65275100 C T TECRL 5'UTR 0.41 TCGA-EE-A29A-06 4 69093746 69093746 G A TMPRSS11B Silent p.I378I 0.57 TCGA-EE-A29A-06 4 70146547 70146547 C T UGT2B28 Missense_Mutation p.S110L 0.38 tolerated(0.72) benign(0.02) TCGA-EE-A29A-06 4 70512848 70512848 C T UGT2A1 Missense_Mutation p.R172K 0.51 deleterious(0.02) possibly_damaging(0.669) TCGA-EE-A29A-06 4 83849254 83849254 G C LIN54 3'UTR 0.11 TCGA-EE-A29A-06 4 90034207 90034207 T C TIGD2 Missense_Mutation p.F28L 0.31 tolerated(0.35) possibly_damaging(0.526) TCGA-EE-A29A-06 5 11022887 11022887 C T CTNND2 Missense_Mutation p.G998E 0.52 deleterious(0) possibly_damaging(0.764) TCGA-EE-A29A-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.40 TCGA-EE-A29A-06 5 121787008 121787008 G A SNCAIP Silent p.V822V 0.38 TCGA-EE-A29A-06 5 134364509 134364509 C T PITX1 Missense_Mutation p.G302D 0.26 tolerated(0.32) benign(0.23) TCGA-EE-A29A-06 5 139231313 139231313 G A NRG2 Missense_Mutation p.P550S 0.44 deleterious(0) probably_damaging(0.966) TCGA-EE-A29A-06 5 140307888 140307888 G A PCDHAC1 Missense_Mutation p.D471N 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 5 140348016 140348016 G A PCDHAC2 Silent p.G555G 0.41 TCGA-EE-A29A-06 5 140501839 140501839 G A PCDHB4 Missense_Mutation p.E87K 0.41 deleterious_low_confidence(0.03) benign(0.327) TCGA-EE-A29A-06 5 140501962 140501962 C T PCDHB4 Missense_Mutation p.H128Y 0.29 deleterious_low_confidence(0.01) benign(0.18) TCGA-EE-A29A-06 5 140723813 140723813 G A PCDHGA3 Silent p.R71R 0.45 TCGA-EE-A29A-06 5 140896415 140896415 A T DIAPH1 3'UTR 0.40 TCGA-EE-A29A-06 5 147023718 147023718 G A JAKMIP2 Missense_Mutation p.S376F 0.44 deleterious(0) probably_damaging(0.989) TCGA-EE-A29A-06 5 156900010 156900010 G A NIPAL4 3'UTR 0.48 TCGA-EE-A29A-06 5 179225962 179225962 G A MGAT4B Missense_Mutation p.R452C 0.27 tolerated(0.06) benign(0.006) TCGA-EE-A29A-06 5 179225963 179225963 G A MGAT4B Silent p.I451I 0.27 TCGA-EE-A29A-06 5 23523410 23523410 G A PRDM9 Missense_Mutation p.G298E 0.41 deleterious(0) benign(0.041) TCGA-EE-A29A-06 5 36049047 36049047 G A UGT3A2 Missense_Mutation p.P263S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 5 37049280 37049280 C T NIPBL Silent p.S2277S 0.40 TCGA-EE-A29A-06 5 38523673 38523673 C T LIFR Missense_Mutation p.D137N 0.39 tolerated(0.56) benign(0.001) TCGA-EE-A29A-06 5 39383036 39383036 T A DAB2 Missense_Mutation p.Y342F 0.41 tolerated(0.06) benign(0.199) TCGA-EE-A29A-06 5 40947800 40947800 G A C7 Missense_Mutation p.E279K 0.46 deleterious(0.04) benign(0.297) TCGA-EE-A29A-06 5 64766754 64766754 C T ADAMTS6 Missense_Mutation p.D105N 0.42 tolerated(1) benign(0.001) TCGA-EE-A29A-06 5 75993836 75993836 C T IQGAP2 Missense_Mutation p.R1411C 0.38 deleterious(0) probably_damaging(0.957) TCGA-EE-A29A-06 5 76646915 76646915 G A PDE8B Missense_Mutation p.R348K 0.38 tolerated(0.81) benign(0.209) TCGA-EE-A29A-06 5 83239201 83239201 G A EDIL3 3'UTR 0.27 TCGA-EE-A29A-06 6 117241473 117241473 A G RFX6 Missense_Mutation p.I395V 0.66 tolerated(0.17) benign(0.161) TCGA-EE-A29A-06 6 128304508 128304508 C T PTPRK Missense_Mutation p.R1095Q 0.83 deleterious(0) probably_damaging(0.981) TCGA-EE-A29A-06 6 13977475 13977475 G A RNF182 Missense_Mutation p.R42K 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29A-06 6 13977476 13977476 G A RNF182 Silent p.R42R 0.27 TCGA-EE-A29A-06 6 2783732 2783732 G A WRNIP1 Missense_Mutation p.E527K 0.28 deleterious(0.04) benign(0.189) TCGA-EE-A29A-06 6 28297505 28297505 G A ZSCAN31 Intron 0.29 TCGA-EE-A29A-06 6 29274491 29274491 G A OR14J1 Missense_Mutation p.G9R 0.28 tolerated(0.12) probably_damaging(0.991) TCGA-EE-A29A-06 6 30652790 30652790 G A PPP1R18 Silent p.L336L 0.61 TCGA-EE-A29A-06 6 33690685 33690685 G A IP6K3 Missense_Mutation p.P349S 0.26 tolerated(0.8) benign(0.008) TCGA-EE-A29A-06 6 43276122 43276122 C T CRIP3 Silent p.K23K 0.31 TCGA-EE-A29A-06 6 43417858 43417858 C T ABCC10 3'UTR 0.61 TCGA-EE-A29A-06 6 47682430 47682430 C T GPR115 Silent p.F483F 0.26 TCGA-EE-A29A-06 6 49753856 49753856 C T PGK2 Missense_Mutation p.A349T 0.13 deleterious(0.02) possibly_damaging(0.604) TCGA-EE-A29A-06 6 55623891 55623891 C T BMP5 Missense_Mutation p.G376E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 6 76728571 76728571 C T IMPG1 Missense_Mutation p.R224K 0.81 tolerated(0.97) benign(0.114) TCGA-EE-A29A-06 6 99893858 99893858 G C USP45 Missense_Mutation p.S597C 0.74 tolerated(0.17) benign(0.022) TCGA-EE-A29A-06 7 100552614 100552614 C T MUC3A Silent p.I455I 0.45 TCGA-EE-A29A-06 7 100606203 100606203 G A MUC3A Silent p.V573V 0.24 TCGA-EE-A29A-06 7 100606204 100606204 G A MUC3A Missense_Mutation p.E574K 0.24 tolerated(0.1) possibly_damaging(0.867) TCGA-EE-A29A-06 7 100686262 100686262 C T MUC17 Silent p.F3855F 0.69 TCGA-EE-A29A-06 7 103018182 103018182 G A SLC26A5 Missense_Mutation p.P617L 0.16 tolerated(0.11) possibly_damaging(0.803) TCGA-EE-A29A-06 7 103018183 103018183 G A SLC26A5 Missense_Mutation p.P617S 0.15 tolerated(0.43) possibly_damaging(0.673) TCGA-EE-A29A-06 7 111517203 111517203 G A DOCK4 Missense_Mutation p.L543F 0.71 deleterious(0) probably_damaging(0.998) TCGA-EE-A29A-06 7 113558310 113558310 G A PPP1R3A Missense_Mutation p.P248S 0.15 tolerated(0.57) benign(0.02) TCGA-EE-A29A-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.63 deleterious(0) probably_damaging(0.967) TCGA-EE-A29A-06 7 143175539 143175539 C T TAS2R41 Missense_Mutation p.P192S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29A-06 7 148947803 148947803 G C ZNF212 Missense_Mutation p.C149S 0.09 tolerated(0.68) benign(0.016) TCGA-EE-A29A-06 7 149152756 149152756 G A ZNF777 Missense_Mutation p.H120Y 0.14 tolerated_low_confidence(0.05) benign(0.161) TCGA-EE-A29A-06 7 149152757 149152757 G A ZNF777 Silent p.S119S 0.14 TCGA-EE-A29A-06 7 150325586 150325586 C A GIMAP6 Nonsense_Mutation p.E34* 0.14 TCGA-EE-A29A-06 7 151699958 151699958 G A GALNTL5 Missense_Mutation p.R273K 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A29A-06 7 24703239 24703239 C T MPP6 Missense_Mutation p.P228S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 7 24703240 24703240 C T MPP6 Missense_Mutation p.P228L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29A-06 7 28220173 28220173 G A JAZF1 Silent p.S8S 0.66 TCGA-EE-A29A-06 7 31102825 31102825 G A ADCYAP1R1 5'UTR 0.19 TCGA-EE-A29A-06 7 31102826 31102826 G A ADCYAP1R1 5'UTR 0.18 TCGA-EE-A29A-06 7 39247072 39247072 C T POU6F2 Missense_Mutation p.L122F 0.20 deleterious(0) probably_damaging(0.986) TCGA-EE-A29A-06 7 55433764 55433764 G A LANCL2 Missense_Mutation p.E16K 0.38 tolerated_low_confidence(0.06) benign(0.129) TCGA-EE-A29A-06 7 6042088 6042088 T C PMS2 Missense_Mutation p.K178R 0.65 tolerated(0.06) probably_damaging(0.926) TCGA-EE-A29A-06 7 83606496 83606496 C G SEMA3A Missense_Mutation p.D557H 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29A-06 7 86542394 86542394 G A KIAA1324L Missense_Mutation p.P620S 0.70 tolerated(0.27) benign(0.421) TCGA-EE-A29A-06 7 95115312 95115312 A T ASB4 Missense_Mutation p.K10I 0.62 deleterious(0.03) benign(0.046) TCGA-EE-A29A-06 8 102631910 102631910 G A GRHL2 Silent p.K414K 0.40 TCGA-EE-A29A-06 8 110432830 110432830 G A PKHD1L1 Missense_Mutation p.G870R 0.40 tolerated(0.08) benign(0.01) TCGA-EE-A29A-06 8 110448656 110448656 G A PKHD1L1 Missense_Mutation p.D1199N 0.48 tolerated(0.48) benign(0.009) TCGA-EE-A29A-06 8 142498693 142498693 G A MROH5 3'UTR 0.46 TCGA-EE-A29A-06 8 23056848 23056848 C T TNFRSF10A Missense_Mutation p.M315I 0.35 tolerated(0.54) benign(0.011) TCGA-EE-A29A-06 8 27880870 27880870 G A NUGGC Silent p.S785S 0.42 TCGA-EE-A29A-06 8 28574773 28574773 C T EXTL3 Silent p.T399T 0.45 TCGA-EE-A29A-06 8 30969276 30969276 A G WRN Missense_Mutation p.N745S 0.51 tolerated(0.18) benign(0.066) TCGA-EE-A29A-06 8 3443700 3443700 C T CSMD1 Missense_Mutation p.E394K 0.81 benign(0.138) TCGA-EE-A29A-06 8 53596543 53596543 G A RB1CC1 Silent p.S34S 0.09 TCGA-EE-A29A-06 8 62289202 62289202 C T CLVS1 Missense_Mutation p.S165L 0.45 tolerated(0.18) probably_damaging(0.933) TCGA-EE-A29A-06 8 6874226 6874226 C T DEFA3 Nonsense_Mutation p.W49* 0.19 TCGA-EE-A29A-06 8 69445342 69445342 G A C8orf34 Missense_Mutation p.E355K 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29A-06 9 116053956 116053956 G A PRPF4 3'UTR 0.15 TCGA-EE-A29A-06 9 135906323 135906323 C T GTF3C5 5'Flank 0.56 TCGA-EE-A29A-06 9 140777405 140777405 C T CACNA1B Intron 0.22 TCGA-EE-A29A-06 9 14722326 14722326 C T CER1 Silent p.P115P 0.39 TCGA-EE-A29A-06 9 14759870 14759870 C A FREM1 Missense_Mutation p.W1745L 0.19 tolerated(1) benign(0.002) TCGA-EE-A29A-06 9 17135129 17135129 C T CNTLN Silent p.S22S 0.44 TCGA-EE-A29A-06 9 6250538 6250538 G A IL33 Missense_Mutation p.M52I 0.47 tolerated(0.91) benign(0) TCGA-EE-A29A-06 9 74865741 74865741 G A GDA 3'Flank 0.87 TCGA-EE-A29A-06 9 74865742 74865742 G A GDA 3'Flank 0.87 TCGA-EE-A29A-06 9 98775115 98775115 C T ERCC6L2 Missense_Mutation p.P400L 0.88 tolerated(0.24) possibly_damaging(0.504) TCGA-EE-A29A-06 X 10085462 10085462 C T WWC3 Missense_Mutation p.R455C 0.94 deleterious(0.01) benign(0.329) TCGA-EE-A29A-06 X 103267877 103267877 G A H2BFWT Missense_Mutation p.T119I 0.93 deleterious(0.05) possibly_damaging(0.637) TCGA-EE-A29A-06 X 117724265 117724265 G A DOCK11 Silent p.E713E 0.86 TCGA-EE-A29A-06 X 14625263 14625263 G A GLRA2 Silent p.T196T 0.80 TCGA-EE-A29A-06 X 18944674 18944674 C T PHKA2 Silent p.K452K 0.79 TCGA-EE-A29A-06 X 47466364 47466364 C T SYN1 Silent p.R169R 0.93 TCGA-EE-A29A-06 X 49061615 49061615 G A CACNA1F Silent p.A1972A 0.92 TCGA-EE-A29B-06 10 100401655 100401655 C T HPSE2 Silent p.L349L 0.43 TCGA-EE-A29B-06 10 115343962 115343962 G A HABP2 Silent p.V431V 0.42 TCGA-EE-A29B-06 10 118220535 118220535 C T PNLIPRP3 Missense_Mutation p.P208L 0.51 deleterious(0) possibly_damaging(0.466) TCGA-EE-A29B-06 10 123845510 123845510 C T TACC2 Silent p.C1165C 0.58 TCGA-EE-A29B-06 10 124050683 124050683 C T BTBD16 Silent p.I188I 0.47 TCGA-EE-A29B-06 10 124358464 124358464 G A DMBT1 Missense_Mutation p.G1044E 0.44 deleterious(0.02) unknown(0) TCGA-EE-A29B-06 10 12803040 12803040 C T CAMK1D Silent p.A131A 0.48 TCGA-EE-A29B-06 10 135053586 135053586 C T VENTX Missense_Mutation p.P185S 0.52 deleterious(0.01) benign(0.018) TCGA-EE-A29B-06 10 15145764 15145764 A G RPP38 Missense_Mutation p.S151G 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29B-06 10 20568655 20568655 G A PLXDC2 Silent p.A499A 0.44 TCGA-EE-A29B-06 10 21102879 21102879 G A NEBL Missense_Mutation p.H779Y 0.46 deleterious(0.04) possibly_damaging(0.485) TCGA-EE-A29B-06 10 21185901 21185901 C T NEBL Missense_Mutation p.E47K 0.40 tolerated(0.53) benign(0.009) TCGA-EE-A29B-06 10 24508700 24508700 C T KIAA1217 Silent p.P72P 0.30 TCGA-EE-A29B-06 10 27356094 27356094 T C ANKRD26 Missense_Mutation p.N400S 0.47 tolerated(0.41) benign(0.011) TCGA-EE-A29B-06 10 28151543 28151543 C T ARMC4 Silent p.G873G 0.54 TCGA-EE-A29B-06 10 28151544 28151544 C T ARMC4 Missense_Mutation p.G873E 0.54 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29B-06 10 31137977 31137977 G A ZNF438 Missense_Mutation p.P453S 0.36 tolerated(0.12) benign(0.045) TCGA-EE-A29B-06 10 43089998 43089998 G A ZNF33B Missense_Mutation p.P134S 0.30 tolerated(0.65) benign(0.043) TCGA-EE-A29B-06 10 49634038 49634038 T A MAPK8 Missense_Mutation p.Y266N 0.49 tolerated(0.07) benign(0.064) TCGA-EE-A29B-06 10 50820022 50820022 C T SLC18A3 Silent p.R412R 0.42 TCGA-EE-A29B-06 10 51225024 51225024 A G AGAP8 Missense_Mutation p.L653P 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 10 52066985 52066985 G A SGMS1 Nonsense_Mutation p.R387* 0.47 TCGA-EE-A29B-06 10 54040626 54040626 G A PRKG1 Missense_Mutation p.G494E 0.55 deleterious(0.02) possibly_damaging(0.833) TCGA-EE-A29B-06 10 61868637 61868637 A C ANK3 Missense_Mutation p.L1042V 0.57 benign(0.376) TCGA-EE-A29B-06 10 68688136 68688136 A C LRRTM3 Missense_Mutation p.T488P 0.34 tolerated(0.07) benign(0.005) TCGA-EE-A29B-06 10 69684878 69684878 G A HERC4 Missense_Mutation p.H977Y 0.56 tolerated(0.06) possibly_damaging(0.904) TCGA-EE-A29B-06 10 70645141 70645141 C T STOX1 Missense_Mutation p.P530L 0.59 tolerated(0.06) benign(0.123) TCGA-EE-A29B-06 10 75010563 75010563 G A MRPS16 3'UTR 0.50 TCGA-EE-A29B-06 10 75010564 75010564 G A MRPS16 3'UTR 0.50 TCGA-EE-A29B-06 10 88478537 88478537 G A LDB3 Silent p.A642A 0.55 TCGA-EE-A29B-06 10 95557376 95557376 C T LGI1 Missense_Mutation p.S497F 0.47 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29B-06 10 96028785 96028785 C T PLCE1 Missense_Mutation p.P1461S 0.37 tolerated(0.3) possibly_damaging(0.654) TCGA-EE-A29B-06 10 96333741 96333741 C T HELLS Missense_Mutation p.L168F 0.38 tolerated(0.14) benign(0.318) TCGA-EE-A29B-06 10 96748773 96748773 C T CYP2C9 Silent p.F487F 0.47 TCGA-EE-A29B-06 11 100211914 100211914 G A CNTN5 Missense_Mutation p.E1003K 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29B-06 11 1017355 1017355 T G MUC6 Missense_Mutation p.T1816P 0.09 probably_damaging(0.944) TCGA-EE-A29B-06 11 102980254 102980254 G A DYNC2H1 5'Flank 0.44 TCGA-EE-A29B-06 11 108409812 108409812 G A EXPH5 Silent p.L128L 0.53 TCGA-EE-A29B-06 11 118037510 118037510 G A SCN2B 3'UTR 0.36 TCGA-EE-A29B-06 11 120008301 120008301 C T TRIM29 Missense_Mutation p.E147K 0.47 deleterious(0.01) benign(0.16) TCGA-EE-A29B-06 11 12316195 12316195 C T MICALCL Missense_Mutation p.S406F 0.38 deleterious(0) possibly_damaging(0.655) TCGA-EE-A29B-06 11 124120520 124120520 G A OR8G1 Missense_Mutation p.G33E 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-EE-A29B-06 11 124135528 124135528 G A OR8G5 Missense_Mutation p.R269K 0.55 tolerated(0.06) benign(0.254) TCGA-EE-A29B-06 11 124180386 124180386 G A OR8D1 Missense_Mutation p.L93F 0.58 deleterious(0.02) benign(0.003) TCGA-EE-A29B-06 11 124294361 124294361 G A OR8B4 Missense_Mutation p.S136F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EE-A29B-06 11 17449913 17449913 C T ABCC8 Missense_Mutation p.D655N 0.53 deleterious(0.04) benign(0.008) TCGA-EE-A29B-06 11 17518312 17518312 C T USH1C Missense_Mutation p.D847N 0.53 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A29B-06 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.44 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-EE-A29B-06 11 1858457 1858457 C T SYT8 Silent p.S334S 0.32 TCGA-EE-A29B-06 11 26714112 26714112 C T SLC5A12 Silent p.V359V 0.32 TCGA-EE-A29B-06 11 3123489 3123489 G A OSBPL5 Missense_Mutation p.P450L 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 11 31312346 31312346 G A DCDC1 Missense_Mutation p.P270S 0.42 tolerated(0.07) probably_damaging(1) TCGA-EE-A29B-06 11 36614842 36614842 C T RAG2 Missense_Mutation p.E293K 0.47 deleterious(0.04) benign(0.02) TCGA-EE-A29B-06 11 373036 373036 C T B4GALNT4 Missense_Mutation p.T152I 0.35 deleterious(0.02) possibly_damaging(0.842) TCGA-EE-A29B-06 11 4388697 4388697 G A OR52B4 Missense_Mutation p.P277S 0.37 deleterious(0.01) benign(0.005) TCGA-EE-A29B-06 11 4471397 4471397 C T OR52K2 Silent p.I276I 0.41 TCGA-EE-A29B-06 11 47726120 47726120 G A AGBL2 Silent p.V187V 0.44 TCGA-EE-A29B-06 11 49974726 49974726 C T OR4C13 Missense_Mutation p.P251L 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-EE-A29B-06 11 5565833 5565833 G A OR52H1 Silent p.I307I 0.62 TCGA-EE-A29B-06 11 56310253 56310253 G A OR5M11 Silent p.L161L 0.38 TCGA-EE-A29B-06 11 56380655 56380655 C T OR5M1 Silent p.V108V 0.43 TCGA-EE-A29B-06 11 57995720 57995720 G A OR10Q1 Missense_Mutation p.L210F 0.39 tolerated(0.15) benign(0.17) TCGA-EE-A29B-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29B-06 11 58605804 58605804 G A GLYATL2 Missense_Mutation p.P39L 0.41 deleterious(0) possibly_damaging(0.834) TCGA-EE-A29B-06 11 60183826 60183826 C T MS4A14 Missense_Mutation p.S495L 0.47 deleterious(0) probably_damaging(0.962) TCGA-EE-A29B-06 11 60198338 60198338 C T MS4A5 Missense_Mutation p.P75S 0.45 tolerated(0.51) possibly_damaging(0.868) TCGA-EE-A29B-06 11 60702777 60702777 G A TMEM132A Silent p.T631T 0.45 TCGA-EE-A29B-06 11 60971722 60971722 C T PGA3 Missense_Mutation p.P67L 0.33 deleterious(0) possibly_damaging(0.721) TCGA-EE-A29B-06 11 64026180 64026180 G T PLCB3 Silent p.V416V 0.45 TCGA-EE-A29B-06 11 64684661 64684661 C T ATG2A 5'UTR 0.62 TCGA-EE-A29B-06 11 65546207 65546207 G T AP5B1 Missense_Mutation p.A586E 0.35 tolerated(1) benign(0.006) TCGA-EE-A29B-06 11 67821482 67821482 G A CHKA Silent p.F449F 0.50 TCGA-EE-A29B-06 11 69631151 69631151 G A FGF3 Silent p.A87A 0.50 TCGA-EE-A29B-06 11 70183477 70183477 C T PPFIA1 Missense_Mutation p.L479F 0.57 deleterious(0.01) benign(0.033) TCGA-EE-A29B-06 11 73073652 73073652 C T ARHGEF17 Silent p.L1623L 0.53 TCGA-EE-A29B-06 11 78433784 78433784 G A TENM4 Silent p.L1243L 0.54 TCGA-EE-A29B-06 11 7982253 7982253 G A NLRP10 Silent p.P302P 0.48 TCGA-EE-A29B-06 11 92523262 92523262 G A FAT3 Missense_Mutation p.V1497I 0.49 benign(0.006) TCGA-EE-A29B-06 11 92523263 92523263 T G FAT3 Missense_Mutation p.V1497G 0.49 possibly_damaging(0.613) TCGA-EE-A29B-06 11 93808340 93808340 G A HEPHL1 Missense_Mutation p.G502E 0.40 tolerated(0.11) possibly_damaging(0.718) TCGA-EE-A29B-06 12 100928704 100928704 T C NR1H4 Missense_Mutation p.L222P 0.50 deleterious(0) probably_damaging(0.973) TCGA-EE-A29B-06 12 101505387 101505387 C T ANO4 Silent p.I748I 0.40 TCGA-EE-A29B-06 12 109017612 109017612 C T SELPLG Missense_Mutation p.A174T 0.43 tolerated(0.6) unknown(0) TCGA-EE-A29B-06 12 113835197 113835197 C T SDS Nonsense_Mutation p.W142* 0.55 TCGA-EE-A29B-06 12 117660615 117660615 C T NOS1 Missense_Mutation p.D1328N 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29B-06 12 121698315 121698315 G A CAMKK2 Intron 0.36 TCGA-EE-A29B-06 12 12318150 12318150 C T LRP6 Missense_Mutation p.G542D 0.41 tolerated(0.07) probably_damaging(0.988) TCGA-EE-A29B-06 12 129558598 129558598 T A TMEM132D Missense_Mutation p.K1041I 0.49 deleterious(0) probably_damaging(0.967) TCGA-EE-A29B-06 12 132400481 132400481 G A ULK1 Missense_Mutation p.C552Y 0.49 tolerated(0.25) benign(0.001) TCGA-EE-A29B-06 12 14766069 14766069 C T GUCY2C Silent p.K1068K 0.54 TCGA-EE-A29B-06 12 14849211 14849211 C T GUCY2C Missense_Mutation p.V58M 0.50 deleterious(0.02) possibly_damaging(0.795) TCGA-EE-A29B-06 12 16704206 16704206 C G LMO3 Missense_Mutation p.D152H 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 12 25380274 25380274 C T KRAS Missense_Mutation p.E62K 0.46 deleterious(0.01) possibly_damaging(0.562) TCGA-EE-A29B-06 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.46 tolerated(0.06) benign(0.374) TCGA-EE-A29B-06 12 29446289 29446289 T G FAR2 Missense_Mutation p.I82M 0.53 deleterious(0.04) possibly_damaging(0.85) TCGA-EE-A29B-06 12 34175371 34175371 C T ALG10 5'UTR 0.41 TCGA-EE-A29B-06 12 45429837 45429837 G A DBX2 Missense_Mutation p.S155F 0.51 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A29B-06 12 4853771 4853771 G A GALNT8 Silent p.R255R 0.48 TCGA-EE-A29B-06 12 48888715 48888715 G A C12orf54 Missense_Mutation p.G126E 0.57 tolerated(0.05) probably_damaging(0.988) TCGA-EE-A29B-06 12 49087188 49087188 G A CCNT1 Silent p.S603S 0.38 TCGA-EE-A29B-06 12 52754687 52754687 G A KRT85 Missense_Mutation p.R492C 0.39 tolerated_low_confidence(0.22) unknown(0) TCGA-EE-A29B-06 12 52913771 52913771 C T KRT5 Missense_Mutation p.G104R 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29B-06 12 53291251 53291251 C T KRT8 Silent p.G499G 0.34 TCGA-EE-A29B-06 12 53291252 53291252 C T KRT8 Missense_Mutation p.G499E 0.36 deleterious(0.02) benign(0.191) TCGA-EE-A29B-06 12 55420404 55420404 G A NEUROD4 Missense_Mutation p.E61K 0.27 tolerated(0.06) possibly_damaging(0.785) TCGA-EE-A29B-06 12 55420507 55420507 G A NEUROD4 Missense_Mutation p.R95K 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 12 55420886 55420886 C T NEUROD4 Silent p.L221L 0.43 TCGA-EE-A29B-06 12 55759573 55759573 C T OR6C75 Missense_Mutation p.P227S 0.46 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-EE-A29B-06 12 55820418 55820418 G A OR6C76 Silent p.L127L 0.37 TCGA-EE-A29B-06 12 57111978 57111978 G A NACA Intron 0.42 TCGA-EE-A29B-06 12 6161802 6161802 C T VWF Missense_Mutation p.R698K 0.42 tolerated(0.67) benign(0.014) TCGA-EE-A29B-06 12 70003892 70003892 C T LRRC10 Missense_Mutation p.E243K 0.37 deleterious(0.01) benign(0.169) TCGA-EE-A29B-06 12 70049327 70049327 G A BEST3 Missense_Mutation p.P456L 0.42 tolerated(0.49) benign(0) TCGA-EE-A29B-06 12 7026757 7026757 C T ENO2 Missense_Mutation p.A108V 0.31 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-EE-A29B-06 12 7026758 7026758 C T ENO2 Silent p.A108A 0.31 TCGA-EE-A29B-06 12 71032925 71032925 C T PTPRR 3'UTR 0.36 TCGA-EE-A29B-06 12 73012696 73012696 C T TRHDE Missense_Mutation p.P738S 0.46 tolerated(0.05) benign(0.012) TCGA-EE-A29B-06 12 73012771 73012771 C T TRHDE Missense_Mutation p.P763S 0.54 tolerated(0.08) benign(0.051) TCGA-EE-A29B-06 12 7639347 7639347 G A CD163 Missense_Mutation p.H736Y 0.45 tolerated(0.17) benign(0.068) TCGA-EE-A29B-06 12 79689912 79689912 C T SYT1 Missense_Mutation p.P180S 0.56 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 12 86374018 86374018 G A MGAT4C Silent p.H162H 0.49 TCGA-EE-A29B-06 12 9242531 9242531 C T A2M Silent p.R895R 0.51 TCGA-EE-A29B-06 13 103718421 103718421 C T SLC10A2 Missense_Mutation p.G60E 0.51 tolerated(0.07) benign(0.008) TCGA-EE-A29B-06 13 103718422 103718422 C A SLC10A2 Missense_Mutation p.G60W 0.50 tolerated(0.1) benign(0.033) TCGA-EE-A29B-06 13 111164316 111164316 A C COL4A2 Silent p.S1639S 0.62 TCGA-EE-A29B-06 13 113773050 113773050 G A F7 Missense_Mutation p.V377M 0.56 tolerated(0.11) benign(0) TCGA-EE-A29B-06 13 20398733 20398733 T C ZMYM5 Missense_Mutation p.S632G 0.33 tolerated(0.23) benign(0.011) TCGA-EE-A29B-06 13 23909019 23909019 G A SACS Missense_Mutation p.P2999L 0.65 probably_damaging(0.998) TCGA-EE-A29B-06 13 26788621 26788621 C T RNF6 Silent p.R466R 0.55 TCGA-EE-A29B-06 13 28519372 28519372 C A ATP5EP2 5'UTR 0.32 TCGA-EE-A29B-06 13 32907431 32907431 C T BRCA2 Missense_Mutation p.P606S 0.77 deleterious(0.02) benign(0.047) TCGA-EE-A29B-06 13 38357311 38357311 C T TRPC4 Missense_Mutation p.E54K 0.36 tolerated(0.22) probably_damaging(0.979) TCGA-EE-A29B-06 13 39263707 39263707 G C FREM2 Silent p.V742V 0.28 TCGA-EE-A29B-06 13 43462570 43462570 A T EPSTI1 Missense_Mutation p.L350H 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.785) TCGA-EE-A29B-06 13 48937001 48937001 C T RB1 Nonsense_Mutation p.Q257* 0.74 TCGA-EE-A29B-06 13 51826083 51826083 C T FAM124A Missense_Mutation p.L230F 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 14 105410418 105410418 G A AHNAK2 Silent p.S3790S 0.41 TCGA-EE-A29B-06 14 106322139 106322139 C T IGHM Missense_Mutation p.G62E 0.42 tolerated(0.64) benign(0.031) TCGA-EE-A29B-06 14 106667784 106667784 C T IGHV3-20 Missense_Mutation p.D50N 0.28 tolerated_low_confidence(0.39) benign(0.001) TCGA-EE-A29B-06 14 107179121 107179121 G A IGHV2-70 Missense_Mutation p.S19F 0.38 deleterious(0) possibly_damaging(0.706) TCGA-EE-A29B-06 14 20404458 20404458 C T OR4K1 Silent p.F211F 0.21 TCGA-EE-A29B-06 14 22192091 22192091 G A TRAV3 5'UTR 0.50 TCGA-EE-A29B-06 14 23847703 23847703 C T CMTM5 Missense_Mutation p.P91L 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 14 23851771 23851771 C T MYH6 Missense_Mutation p.E1888K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 14 23855654 23855654 C T MYH6 Missense_Mutation p.R1610H 0.44 deleterious(0.01) possibly_damaging(0.458) TCGA-EE-A29B-06 14 24033266 24033266 G A AP1G2 Silent p.A360A 0.61 TCGA-EE-A29B-06 14 24533496 24533496 C T LRRC16B Silent p.T1007T 0.67 TCGA-EE-A29B-06 14 26917300 26917300 G A NOVA1 Silent p.F463F 0.54 TCGA-EE-A29B-06 14 28734369 28734369 C T BNIP3P1 RNA 0.37 TCGA-EE-A29B-06 14 39543713 39543713 G A SEC23A Nonsense_Mutation p.R337* 0.43 TCGA-EE-A29B-06 14 55251155 55251155 C T SAMD4A Intron 0.47 TCGA-EE-A29B-06 14 62547599 62547599 C T SYT16 Silent p.P347P 0.25 TCGA-EE-A29B-06 14 63316501 63316501 C T KCNH5 Missense_Mutation p.R480Q 0.49 deleterious(0) probably_damaging(0.995) TCGA-EE-A29B-06 14 68118220 68118220 G A ARG2 3'UTR 0.32 TCGA-EE-A29B-06 14 70527656 70527656 C T SLC8A3 Silent p.V595V 0.36 TCGA-EE-A29B-06 14 70989629 70989629 G A ADAM20 Missense_Mutation p.P666S 0.43 tolerated(0.12) benign(0.061) TCGA-EE-A29B-06 14 92150271 92150271 C T CATSPERB Missense_Mutation p.G294E 0.51 deleterious(0) probably_damaging(0.929) TCGA-EE-A29B-06 14 92268712 92268712 G A TC2N Nonsense_Mutation p.Q119* 0.33 TCGA-EE-A29B-06 14 92403366 92403366 G A FBLN5 Missense_Mutation p.P102S 0.53 tolerated(0.24) benign(0.004) TCGA-EE-A29B-06 14 94756848 94756848 G A SERPINA10 Missense_Mutation p.S28L 0.41 tolerated(0.25) benign(0.152) TCGA-EE-A29B-06 14 96703490 96703490 G A BDKRB2 Missense_Mutation p.D16N 0.44 tolerated_low_confidence(0.18) benign(0.006) TCGA-EE-A29B-06 15 100821580 100821580 G A ADAMTS17 Missense_Mutation p.P215S 0.55 tolerated(0.73) benign(0) TCGA-EE-A29B-06 15 24921891 24921891 C T NPAP1 Missense_Mutation p.P293S 0.52 tolerated(0.35) probably_damaging(0.932) TCGA-EE-A29B-06 15 24924372 24924372 C T NPAP1 Nonsense_Mutation p.Q1120* 0.46 TCGA-EE-A29B-06 15 25417693 25417693 C T SNORD115-3 5'Flank 0.27 TCGA-EE-A29B-06 15 25417694 25417694 C T SNORD115-3 5'Flank 0.32 TCGA-EE-A29B-06 15 25958939 25958939 G A ATP10A Silent p.F742F 0.56 TCGA-EE-A29B-06 15 34393911 34393911 G A EMC7 Missense_Mutation p.R44C 0.50 deleterious(0) possibly_damaging(0.642) TCGA-EE-A29B-06 15 35083353 35083353 C T ACTC1 Missense_Mutation p.E318K 0.45 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-EE-A29B-06 15 41120596 41120596 C T PPP1R14D Missense_Mutation p.E82K 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-EE-A29B-06 15 42479529 42479529 G A VPS39 Silent p.S158S 0.33 TCGA-EE-A29B-06 15 51514633 51514633 C T CYP19A1 Missense_Mutation p.E181K 0.44 tolerated(0.81) benign(0.004) TCGA-EE-A29B-06 15 51975550 51975550 G A SCG3 Missense_Mutation p.E106K 0.36 deleterious_low_confidence(0.01) benign(0.423) TCGA-EE-A29B-06 15 54007449 54007449 G A WDR72 Missense_Mutation p.S152L 0.32 deleterious(0) probably_damaging(0.96) TCGA-EE-A29B-06 15 54025359 54025359 C T WDR72 Splice_Site 0.41 TCGA-EE-A29B-06 15 59510172 59510172 G A MYO1E Missense_Mutation p.T342I 0.40 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A29B-06 15 62211588 62211588 T C VPS13C Missense_Mutation p.Y2513C 0.43 deleterious(0) probably_damaging(0.926) TCGA-EE-A29B-06 15 65297275 65297275 C T MTFMT Splice_Site p.X298_splice 0.46 TCGA-EE-A29B-06 15 75941913 75941913 C T SNX33 Missense_Mutation p.A157V 0.33 tolerated(0.2) benign(0) TCGA-EE-A29B-06 15 78390853 78390853 C T SH2D7 Missense_Mutation p.S187F 0.41 tolerated(0.14) possibly_damaging(0.459) TCGA-EE-A29B-06 15 78390855 78390855 C T SH2D7 Missense_Mutation p.P188S 0.40 tolerated(0.16) benign(0.009) TCGA-EE-A29B-06 15 85326082 85326082 C T ZNF592 Missense_Mutation p.S59L 0.39 tolerated(0.05) benign(0.392) TCGA-EE-A29B-06 15 93007652 93007652 C T ST8SIA2 3'UTR 0.49 TCGA-EE-A29B-06 16 11868860 11868860 G A ZC3H7A Missense_Mutation p.H199Y 0.44 tolerated(1) benign(0) TCGA-EE-A29B-06 16 1306584 1306584 C T TPSD1 Silent p.P50P 0.51 TCGA-EE-A29B-06 16 14972621 14972621 C T NOMO1 Missense_Mutation p.S896F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 16 1536065 1536065 C T PTX4 Missense_Mutation p.E433K 0.36 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A29B-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.53 deleterious(0.03) benign(0.001) TCGA-EE-A29B-06 16 20043949 20043949 C T GPR139 Missense_Mutation p.R57K 0.42 tolerated(0.1) probably_damaging(0.987) TCGA-EE-A29B-06 16 2257060 2257060 G A MLST8 Silent p.R123R 0.45 TCGA-EE-A29B-06 16 23417548 23417548 G A COG7 Missense_Mutation p.S504F 0.52 deleterious(0) possibly_damaging(0.73) TCGA-EE-A29B-06 16 24166007 24166007 C T PRKCB Silent p.V356V 0.41 TCGA-EE-A29B-06 16 2546526 2546526 C T RP11-20I23.1 Missense_Mutation p.P126L 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 16 2812404 2812404 T C SRRM2 Silent p.S625S 0.46 TCGA-EE-A29B-06 16 29809940 29809940 C T KIF22 Missense_Mutation p.P141S 0.37 tolerated(0.31) possibly_damaging(0.844) TCGA-EE-A29B-06 16 29998375 29998375 C T TAOK2 Missense_Mutation p.P928S 0.41 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A29B-06 16 3187497 3187497 C G ZNF213 Silent p.R72R 0.38 TCGA-EE-A29B-06 16 3454662 3454663 - T ZNF174 Intron 0.25 TCGA-EE-A29B-06 16 4828112 4828112 G A SEPT12 Missense_Mutation p.P284S 0.52 tolerated(0.24) possibly_damaging(0.72) TCGA-EE-A29B-06 16 51172844 51172844 G A SALL1 Missense_Mutation p.P1097S 0.81 tolerated(0.55) benign(0.004) TCGA-EE-A29B-06 16 55844441 55844441 G A CES1 Missense_Mutation p.R436W 0.50 deleterious(0.02) possibly_damaging(0.583) TCGA-EE-A29B-06 16 57931789 57931789 G A CNGB1 Silent p.I1002I 0.89 TCGA-EE-A29B-06 16 61935302 61935302 G A CDH8 Nonsense_Mutation p.Q110* 0.90 TCGA-EE-A29B-06 16 736754 736754 C T WDR24 Missense_Mutation p.G441D 0.47 tolerated(0.24) benign(0.022) TCGA-EE-A29B-06 16 74425417 74425417 T C NPIPB15 Silent p.T257T 0.26 TCGA-EE-A29B-06 16 77354998 77354998 G A ADAMTS18 Silent p.Y755Y 0.97 TCGA-EE-A29B-06 17 10314205 10314205 G A MYH8 Silent p.F492F 0.46 TCGA-EE-A29B-06 17 10348361 10348361 G A MYH4 Missense_Mutation p.R1800C 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A29B-06 17 10363552 10363552 C T MYH4 Missense_Mutation p.E412K 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 17 10451235 10451235 C T MYH2 Translation_Start_Site p.M1? 0.52 deleterious_low_confidence(0) benign(0.254) TCGA-EE-A29B-06 17 171067 171067 T A RPH3AL Missense_Mutation p.I73F 0.52 deleterious(0) probably_damaging(0.974) TCGA-EE-A29B-06 17 18205590 18205590 G A TOP3A Missense_Mutation p.H268Y 0.43 tolerated(0.45) benign(0.006) TCGA-EE-A29B-06 17 18874834 18874834 C T FAM83G Missense_Mutation p.M770I 0.34 tolerated(0.21) benign(0) TCGA-EE-A29B-06 17 26816349 26816349 G A SLC13A2 Missense_Mutation p.D74N 0.33 tolerated(0.05) benign(0.104) TCGA-EE-A29B-06 17 27061949 27061949 A C NEK8 Missense_Mutation p.K138T 0.39 deleterious(0) benign(0.405) TCGA-EE-A29B-06 17 32964423 32964423 G A TMEM132E Silent p.K709K 0.38 TCGA-EE-A29B-06 17 34233525 34233525 G A AC015849.16 RNA 0.43 TCGA-EE-A29B-06 17 38928361 38928361 G A KRT26 Missense_Mutation p.S2F 0.56 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-EE-A29B-06 17 38975078 38975078 G A KRT10 Missense_Mutation p.S570F 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29B-06 17 39092465 39092465 C T KRT23 Missense_Mutation p.E131K 0.46 tolerated(0.28) probably_damaging(0.999) TCGA-EE-A29B-06 17 42225989 42225989 C T C17orf53 Missense_Mutation p.S273F 0.48 deleterious(0) benign(0.216) TCGA-EE-A29B-06 17 42458313 42458313 G A ITGA2B Missense_Mutation p.P443S 0.41 tolerated(0.29) benign(0.007) TCGA-EE-A29B-06 17 42745546 42745546 T C C17orf104 Missense_Mutation p.I756T 0.38 tolerated(0.1) benign(0.029) TCGA-EE-A29B-06 17 4435968 4435968 C T SPNS2 Silent p.A308A 0.42 TCGA-EE-A29B-06 17 4798781 4798781 C T MINK1 Silent p.T1074T 0.45 TCGA-EE-A29B-06 17 48266284 48266284 G A COL1A1 Missense_Mutation p.P1009S 0.42 unknown(0) TCGA-EE-A29B-06 17 49374332 49374332 C T UTP18 Silent p.H551H 0.45 TCGA-EE-A29B-06 17 5058874 5058874 A C USP6 Missense_Mutation p.Q934P 0.48 tolerated_low_confidence(0.2) probably_damaging(0.998) TCGA-EE-A29B-06 17 56321382 56321382 C T LPO Missense_Mutation p.S35F 0.54 tolerated(0.7) benign(0.235) TCGA-EE-A29B-06 17 56434905 56434905 A T RNF43 Silent p.P744P 0.35 TCGA-EE-A29B-06 17 58348781 58348781 C T USP32 Silent p.R211R 0.46 TCGA-EE-A29B-06 17 60518079 60518079 C T METTL2A Silent p.I257I 0.32 TCGA-EE-A29B-06 17 60782887 60782887 C T MARCH10 Intron 0.39 TCGA-EE-A29B-06 17 62022096 62022096 G A SCN4A Silent p.S1283S 0.33 TCGA-EE-A29B-06 17 72937725 72937725 C T OTOP3 Missense_Mutation p.A104V 0.33 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A29B-06 17 7369840 7369840 G A ZBTB4 Missense_Mutation p.S94F 0.50 unknown(0) TCGA-EE-A29B-06 17 74287678 74287678 G A QRICH2 Missense_Mutation p.P878S 0.45 tolerated(0.18) benign(0.041) TCGA-EE-A29B-06 17 7464348 7464348 C T TNFSF12-TNFSF13 3'UTR 0.36 TCGA-EE-A29B-06 17 75398634 75398634 C T SEPT9 Silent p.I190I 0.64 TCGA-EE-A29B-06 17 77915864 77915864 G A TBC1D16 Missense_Mutation p.R684W 0.47 deleterious(0) probably_damaging(0.997) TCGA-EE-A29B-06 17 79099131 79099131 G A AATK Intron 0.43 TCGA-EE-A29B-06 17 80195474 80195474 C T SLC16A3 Silent p.F276F 0.47 TCGA-EE-A29B-06 17 8638462 8638462 C T CCDC42 Silent p.K275K 0.43 TCGA-EE-A29B-06 18 13096208 13096208 C T CEP192 Silent p.F2153F 0.44 TCGA-EE-A29B-06 18 20529644 20529644 C T RBBP8 Silent p.V72V 0.42 TCGA-EE-A29B-06 18 28581646 28581646 C T DSC3 Missense_Mutation p.E725K 0.42 deleterious(0) possibly_damaging(0.51) TCGA-EE-A29B-06 18 28722027 28722027 C T DSC1 Missense_Mutation p.E399K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29B-06 18 30873146 30873146 C T CCDC178 Missense_Mutation p.E385K 0.58 tolerated(0.13) benign(0.336) TCGA-EE-A29B-06 18 31311969 31311969 C T ASXL3 Missense_Mutation p.A306V 0.41 benign(0.172) TCGA-EE-A29B-06 18 47014859 47014859 C T RPL17 3'UTR 0.50 TCGA-EE-A29B-06 18 54363639 54363639 C T WDR7 Silent p.F508F 0.28 TCGA-EE-A29B-06 18 54606596 54606596 C T WDR7 Missense_Mutation p.L1346F 0.31 deleterious(0) probably_damaging(0.981) TCGA-EE-A29B-06 18 55024424 55024424 G A ST8SIA3 Missense_Mutation p.E195K 0.43 benign(0.074) TCGA-EE-A29B-06 18 56587575 56587575 C T ZNF532 Missense_Mutation p.P686S 0.48 tolerated(0.38) probably_damaging(0.997) TCGA-EE-A29B-06 18 580754 580754 G A CETN1 Missense_Mutation p.D116N 0.42 deleterious(0.04) possibly_damaging(0.478) TCGA-EE-A29B-06 18 60608997 60608997 C T PHLPP1 Missense_Mutation p.P1003S 0.56 tolerated(0.25) benign(0.045) TCGA-EE-A29B-06 18 61387270 61387270 A T SERPINB11 Nonsense_Mutation p.K167* 0.21 TCGA-EE-A29B-06 18 72173110 72173110 C A CNDP2 Silent p.L77L 0.42 TCGA-EE-A29B-06 18 74536217 74536217 A G ZNF236 5'UTR 0.43 TCGA-EE-A29B-06 19 10104324 10104324 G A COL5A3 Missense_Mutation p.P556S 0.33 unknown(0) TCGA-EE-A29B-06 19 10940944 10940944 C T DNM2 Silent p.S811S 0.37 TCGA-EE-A29B-06 19 11152222 11152222 C T SMARCA4 Silent p.I1470I 0.25 TCGA-EE-A29B-06 19 16875863 16875863 C T NWD1 Missense_Mutation p.S757F 0.38 tolerated(0.38) benign(0.124) TCGA-EE-A29B-06 19 17327013 17327013 C T USE1 Silent p.F89F 0.40 TCGA-EE-A29B-06 19 19655606 19655606 C T CILP2 Missense_Mutation p.P751L 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A29B-06 19 19788776 19788776 C T ZNF101 Missense_Mutation p.T36I 0.35 tolerated(0.07) probably_damaging(0.951) TCGA-EE-A29B-06 19 19788777 19788777 C T ZNF101 Silent p.T36T 0.35 TCGA-EE-A29B-06 19 20727586 20727586 G A ZNF737 Missense_Mutation p.H475Y 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29B-06 19 22155343 22155343 C T ZNF208 Silent p.K831K 0.43 TCGA-EE-A29B-06 19 32845455 32845456 - T ZNF507 Frame_Shift_Ins p.L574Ffs*7 0.18 TCGA-EE-A29B-06 19 33355126 33355126 G A SLC7A9 Silent p.I118I 0.45 TCGA-EE-A29B-06 19 36333297 36333297 G A NPHS1 Silent p.L830L 0.33 TCGA-EE-A29B-06 19 37677522 37677522 G A ZNF585B Missense_Mutation p.S306F 0.45 deleterious(0.02) possibly_damaging(0.745) TCGA-EE-A29B-06 19 3784157 3784157 C T MATK Silent p.E110E 0.45 TCGA-EE-A29B-06 19 39017643 39017643 A T RYR1 Missense_Mutation p.D3546V 0.34 benign(0.016) TCGA-EE-A29B-06 19 39023334 39023334 G A RYR1 Silent p.G3739G 0.47 TCGA-EE-A29B-06 19 42219003 42219003 G A CEACAM5 Missense_Mutation p.V180I 0.36 tolerated(1) possibly_damaging(0.647) TCGA-EE-A29B-06 19 42351926 42351926 G A DMRTC2 Missense_Mutation p.G116E 0.78 tolerated(1) benign(0.017) TCGA-EE-A29B-06 19 42354506 42354506 G A DMRTC2 Intron 0.52 TCGA-EE-A29B-06 19 42398370 42398370 C T ARHGEF1 Silent p.F260F 0.41 TCGA-EE-A29B-06 19 42492161 42492161 C T ATP1A3 Nonsense_Mutation p.W108* 0.44 TCGA-EE-A29B-06 19 43406586 43406586 C T PSG6 3'Flank 0.40 TCGA-EE-A29B-06 19 45895296 45895296 G A PPP1R13L Missense_Mutation p.R553C 0.43 deleterious(0) possibly_damaging(0.689) TCGA-EE-A29B-06 19 49969019 49969019 C T ALDH16A1 Silent p.F531F 0.42 TCGA-EE-A29B-06 19 50172183 50172183 C T BCL2L12 Missense_Mutation p.P193L 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A29B-06 19 50200633 50200633 C T CPT1C Silent p.F64F 0.43 TCGA-EE-A29B-06 19 50957351 50957351 G A MYBPC2 Silent p.A608A 0.77 TCGA-EE-A29B-06 19 52249116 52249116 G A FPR1 3'UTR 0.59 TCGA-EE-A29B-06 19 52659922 52659922 G A ZNF836 Silent p.T338T 0.35 TCGA-EE-A29B-06 19 52659923 52659923 G A ZNF836 Missense_Mutation p.T338I 0.40 tolerated(0.12) benign(0.339) TCGA-EE-A29B-06 19 52941068 52941068 G A ZNF534 Missense_Mutation p.E132K 0.29 deleterious(0.04) possibly_damaging(0.811) TCGA-EE-A29B-06 19 53432252 53432252 G A ZNF321P Silent p.T202T 0.52 TCGA-EE-A29B-06 19 54445290 54445290 G A CACNG7 Missense_Mutation p.G191R 0.33 tolerated(0.09) possibly_damaging(0.752) TCGA-EE-A29B-06 19 54501563 54501563 G A CACNG6 Silent p.K134K 0.62 TCGA-EE-A29B-06 19 55112350 55112350 G A LILRA1 3'UTR 0.30 TCGA-EE-A29B-06 19 55495074 55495074 G A NLRP2 Missense_Mutation p.E670K 0.44 tolerated(0.13) benign(0.376) TCGA-EE-A29B-06 19 56363446 56363446 G A NLRP4 5'UTR 0.40 TCGA-EE-A29B-06 19 56485147 56485147 G A NLRP8 Nonsense_Mutation p.W888* 0.45 TCGA-EE-A29B-06 19 58565046 58565046 G A ZSCAN1 Missense_Mutation p.G285E 0.51 tolerated(0.41) benign(0.212) TCGA-EE-A29B-06 19 6665012 6665012 G A TNFSF14 Silent p.V216V 0.46 TCGA-EE-A29B-06 19 736044 736044 G A PALM Silent p.L156L 0.43 TCGA-EE-A29B-06 19 7987027 7987027 G A SNAPC2 Silent p.Q160Q 0.50 TCGA-EE-A29B-06 19 7987028 7987028 G A SNAPC2 Missense_Mutation p.E161K 0.51 tolerated(0.21) benign(0.088) TCGA-EE-A29B-06 19 8151158 8151158 A T FBN3 Missense_Mutation p.V2269D 0.47 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29B-06 19 8982215 8982215 G A MUC16 Silent p.T14020T 0.55 TCGA-EE-A29B-06 19 9087679 9087679 G A MUC16 Missense_Mutation p.P1379L 0.59 unknown(0) TCGA-EE-A29B-06 1 107867445 107867445 G A NTNG1 Missense_Mutation p.R263K 0.56 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 1 109271457 109271457 G A FNDC7 Missense_Mutation p.E525K 0.38 tolerated(0.76) benign(0.014) TCGA-EE-A29B-06 1 110304162 110304162 G A EPS8L3 Silent p.S17S 0.36 TCGA-EE-A29B-06 1 113253973 113253973 A T PPM1J Missense_Mutation p.F321I 0.45 deleterious(0) benign(0.412) TCGA-EE-A29B-06 1 118483757 118483757 C T WDR3 Missense_Mutation p.S267L 0.52 tolerated(0.14) benign(0.046) TCGA-EE-A29B-06 1 120458690 120458690 G A NOTCH2 Missense_Mutation p.P2219S 0.38 tolerated(0.14) probably_damaging(0.998) TCGA-EE-A29B-06 1 13001314 13001314 C T PRAMEF6 Silent p.G123G 0.28 TCGA-EE-A29B-06 1 13001315 13001315 C T PRAMEF6 Missense_Mutation p.G123E 0.29 tolerated(1) benign(0.004) TCGA-EE-A29B-06 1 13036482 13036482 C A PRAMEF22 Missense_Mutation p.T185N 0.26 tolerated(0.1) benign(0.01) TCGA-EE-A29B-06 1 145209127 145209127 C T RP11-458D21.5 5'Flank 0.19 TCGA-EE-A29B-06 1 145533060 145533060 G A ITGA10 Silent p.G385G 0.22 TCGA-EE-A29B-06 1 150525073 150525073 G A ADAMTSL4 Silent p.Q25Q 0.83 TCGA-EE-A29B-06 1 150525074 150525074 G A ADAMTSL4 Missense_Mutation p.E26K 0.84 tolerated_low_confidence(0.19) benign(0.063) TCGA-EE-A29B-06 1 152326763 152326763 C T FLG2 Missense_Mutation p.G1167S 0.67 unknown(0) TCGA-EE-A29B-06 1 153314218 153314218 T C PGLYRP4 Silent p.E170E 0.30 TCGA-EE-A29B-06 1 155028639 155028639 C T ADAM15 Silent p.N276N 0.20 TCGA-EE-A29B-06 1 157771832 157771832 C T FCRL1 Silent p.S253S 0.23 TCGA-EE-A29B-06 1 158323678 158323678 G A CD1E 5'UTR 0.80 TCGA-EE-A29B-06 1 158670321 158670321 C T OR6K2 Missense_Mutation p.G41E 0.26 deleterious(0) probably_damaging(0.959) TCGA-EE-A29B-06 1 158736335 158736335 G T OR6N1 Missense_Mutation p.F46L 0.71 tolerated(0.12) benign(0.047) TCGA-EE-A29B-06 1 159863049 159863049 T A CCDC19 Missense_Mutation p.N17I 0.71 deleterious(0.01) benign(0.004) TCGA-EE-A29B-06 1 160282958 160282958 C T COPA Splice_Site p.X281_splice 0.22 TCGA-EE-A29B-06 1 16095071 16095071 G A FBLIM1 Missense_Mutation p.E163K 0.33 tolerated(0.52) possibly_damaging(0.801) TCGA-EE-A29B-06 1 161018297 161018297 C T ARHGAP30 Silent p.R838R 0.20 TCGA-EE-A29B-06 1 162381717 162381717 T C SH2D1B Silent p.L30L 0.22 TCGA-EE-A29B-06 1 162829271 162829271 C T C1orf110 Missense_Mutation p.E56K 0.13 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A29B-06 1 16559008 16559008 G A RSG1 Missense_Mutation p.S175F 0.23 deleterious(0) possibly_damaging(0.701) TCGA-EE-A29B-06 1 166963267 166963267 G A MAEL Missense_Mutation p.E162K 0.24 tolerated(0.63) possibly_damaging(0.591) TCGA-EE-A29B-06 1 167095395 167095395 G A DUSP27 Missense_Mutation p.D343N 0.22 deleterious(0.01) possibly_damaging(0.451) TCGA-EE-A29B-06 1 167871000 167871000 C T ADCY10 Silent p.L112L 0.18 TCGA-EE-A29B-06 1 167973951 167973951 C T DCAF6 Missense_Mutation p.S433F 0.69 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-EE-A29B-06 1 168007709 168007709 G A DCAF6 Silent p.L570L 0.65 TCGA-EE-A29B-06 1 169388129 169388129 A T CCDC181 Intron 0.25 TCGA-EE-A29B-06 1 175328867 175328867 G A TNR Missense_Mutation p.A952V 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 1 17596805 17596805 G A PADI3 Missense_Mutation p.G244R 0.50 tolerated(0.06) probably_damaging(0.962) TCGA-EE-A29B-06 1 178482299 178482299 G A TEX35 5'UTR 0.64 TCGA-EE-A29B-06 1 179523637 179523637 C T NPHS2 Nonsense_Mutation p.W256* 0.19 TCGA-EE-A29B-06 1 181549870 181549870 C T CACNA1E Silent p.F303F 0.22 TCGA-EE-A29B-06 1 183209551 183209551 C A LAMC2 Intron 0.76 TCGA-EE-A29B-06 1 19183844 19183844 G A TAS1R2 Missense_Mutation p.S155F 0.29 deleterious(0) possibly_damaging(0.806) TCGA-EE-A29B-06 1 196762501 196762501 G A CFHR3 Missense_Mutation p.G284E 0.18 tolerated(0.28) possibly_damaging(0.792) TCGA-EE-A29B-06 1 200090082 200090082 A C NR5A2 Missense_Mutation p.L459F 0.73 tolerated(0.09) possibly_damaging(0.48) TCGA-EE-A29B-06 1 200523698 200523698 C T KIF14 Missense_Mutation p.E1489K 0.21 tolerated(0.91) benign(0.001) TCGA-EE-A29B-06 1 201352246 201352246 C T LAD1 Missense_Mutation p.E448K 0.19 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A29B-06 1 205561299 205561299 T C MFSD4 Missense_Mutation p.L394P 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 1 205888086 205888086 C T SLC26A9 Missense_Mutation p.G713E 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29B-06 1 209796404 209796404 C T LAMB3 Missense_Mutation p.G827R 0.25 tolerated(0.11) possibly_damaging(0.707) TCGA-EE-A29B-06 1 209799103 209799103 G A LAMB3 Silent p.S622S 0.60 TCGA-EE-A29B-06 1 209949039 209949039 G A TRAF3IP3 Silent p.R337R 0.29 TCGA-EE-A29B-06 1 209949040 209949040 G T TRAF3IP3 Nonsense_Mutation p.E338* 0.28 TCGA-EE-A29B-06 1 210977359 210977359 C T KCNH1 Missense_Mutation p.D538N 0.74 deleterious(0.01) possibly_damaging(0.868) TCGA-EE-A29B-06 1 216850545 216850545 C T ESRRG Silent p.K120K 0.72 TCGA-EE-A29B-06 1 22078091 22078091 C T USP48 Missense_Mutation p.R228K 0.43 tolerated(0.5) benign(0.007) TCGA-EE-A29B-06 1 226127586 226127586 C T LEFTY2 Missense_Mutation p.E123K 0.71 tolerated(1) benign(0.071) TCGA-EE-A29B-06 1 228505874 228505874 G A OBSCN Missense_Mutation p.V5668M 0.25 possibly_damaging(0.632) TCGA-EE-A29B-06 1 228528905 228528905 G A OBSCN Missense_Mutation p.R6893Q 0.24 probably_damaging(0.956) TCGA-EE-A29B-06 1 229438698 229438698 C T RAB4A Missense_Mutation p.P211S 0.18 tolerated(0.36) benign(0.001) TCGA-EE-A29B-06 1 229773405 229773405 G A URB2 Missense_Mutation p.M1015I 0.28 tolerated(0.58) benign(0) TCGA-EE-A29B-06 1 233393880 233393880 G A PCNXL2 Silent p.F576F 0.74 TCGA-EE-A29B-06 1 23418837 23418837 G A LUZP1 Missense_Mutation p.P640S 0.42 tolerated(0.52) benign(0.002) TCGA-EE-A29B-06 1 234367202 234367202 C A SLC35F3 Missense_Mutation p.A108D 0.08 tolerated(0.32) benign(0.316) TCGA-EE-A29B-06 1 235969062 235969062 T C LYST Missense_Mutation p.E1125G 0.72 tolerated(0.07) benign(0.24) TCGA-EE-A29B-06 1 236906244 236906244 G A ACTN2 Missense_Mutation p.E386K 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29B-06 1 24389691 24389691 G A MYOM3 Missense_Mutation p.T1232I 0.44 deleterious(0) possibly_damaging(0.628) TCGA-EE-A29B-06 1 245704168 245704168 G A KIF26B Silent p.G422G 0.24 TCGA-EE-A29B-06 1 246093226 246093226 G A SMYD3 Missense_Mutation p.S182F 0.72 deleterious(0.05) benign(0.081) TCGA-EE-A29B-06 1 247582213 247582213 C T NLRP3 Silent p.I39I 0.74 TCGA-EE-A29B-06 1 247614628 247614628 A G OR2B11 Silent p.L219L 0.62 TCGA-EE-A29B-06 1 248436940 248436940 G A OR2T33 Silent p.F59F 0.63 TCGA-EE-A29B-06 1 248651955 248651955 C T OR2T5 Silent p.F22F 0.23 TCGA-EE-A29B-06 1 248722727 248722727 G A OR2T29 Silent p.F22F 0.65 TCGA-EE-A29B-06 1 24979044 24979044 C T SRRM1 Missense_Mutation p.S282F 0.38 unknown(0) TCGA-EE-A29B-06 1 24979045 24979045 C T SRRM1 Silent p.S282S 0.41 TCGA-EE-A29B-06 1 26385114 26385114 C T TRIM63 Missense_Mutation p.E200K 0.48 deleterious(0.03) benign(0.015) TCGA-EE-A29B-06 1 34006186 34006186 C T CSMD2 Silent p.L3046L 0.47 TCGA-EE-A29B-06 1 34090146 34090146 G A CSMD2 Silent p.I1826I 0.33 TCGA-EE-A29B-06 1 34286079 34286079 G A CSMD2 Missense_Mutation p.S357L 0.48 deleterious(0.02) possibly_damaging(0.531) TCGA-EE-A29B-06 1 38227191 38227191 C T EPHA10 Missense_Mutation p.G246R 0.42 tolerated(0.13) probably_damaging(0.998) TCGA-EE-A29B-06 1 39361666 39361666 C T RHBDL2 Missense_Mutation p.G195E 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 1 45091971 45091971 C T RNF220 Silent p.S269S 0.41 TCGA-EE-A29B-06 1 47264740 47264740 C T CYP4B1 5'UTR 0.31 TCGA-EE-A29B-06 1 48701515 48701515 G A SLC5A9 Missense_Mutation p.R444K 0.38 tolerated(0.75) benign(0.02) TCGA-EE-A29B-06 1 54474509 54474509 G A LDLRAD1 3'UTR 0.57 TCGA-EE-A29B-06 1 67635190 67635190 G A IL23R Missense_Mutation p.R79K 0.29 tolerated(0.44) possibly_damaging(0.567) TCGA-EE-A29B-06 1 68904735 68904735 C T RPE65 Silent p.R296R 0.37 TCGA-EE-A29B-06 1 68905294 68905294 G A RPE65 Silent p.I225I 0.26 TCGA-EE-A29B-06 1 70504778 70504778 C T LRRC7 Nonsense_Mutation p.Q1053* 0.43 TCGA-EE-A29B-06 1 70728283 70728283 G A ANKRD13C 3'UTR 0.57 TCGA-EE-A29B-06 1 78309059 78309059 C T FAM73A Silent p.I321I 0.38 TCGA-EE-A29B-06 1 79403498 79403498 C T ELTD1 Missense_Mutation p.D252N 0.42 tolerated(1) probably_damaging(0.976) TCGA-EE-A29B-06 1 82434923 82434923 C T LPHN2 Missense_Mutation p.S845F 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 1 91405082 91405082 G A ZNF644 Missense_Mutation p.S610L 0.42 tolerated(0.15) benign(0.342) TCGA-EE-A29B-06 1 98165083 98165083 G A DPYD Silent p.I168I 0.36 TCGA-EE-A29B-06 20 13260312 13260312 C T ISM1 Missense_Mutation p.S137F 0.50 deleterious(0.04) possibly_damaging(0.553) TCGA-EE-A29B-06 20 24524126 24524126 G A SYNDIG1 Silent p.G131G 0.52 TCGA-EE-A29B-06 20 25450664 25450664 C T NINL Missense_Mutation p.E1106K 0.43 deleterious(0.04) possibly_damaging(0.664) TCGA-EE-A29B-06 20 25459693 25459693 G A NINL Silent p.V689V 0.39 TCGA-EE-A29B-06 20 30414646 30414646 C T MYLK2 Missense_Mutation p.H377Y 0.49 deleterious(0.01) possibly_damaging(0.485) TCGA-EE-A29B-06 20 31606511 31606511 G A BPIFB2 Silent p.R246R 0.47 TCGA-EE-A29B-06 20 34041837 34041837 C T GDF5 Intron 0.43 TCGA-EE-A29B-06 20 35219682 35219682 C T TGIF2 Missense_Mutation p.P188S 0.44 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A29B-06 20 3722942 3722942 C T HSPA12B Silent p.V51V 0.51 TCGA-EE-A29B-06 20 42143938 42143938 C T L3MBTL1 Silent p.V198V 0.46 TCGA-EE-A29B-06 20 42939751 42939751 C T FITM2 Missense_Mutation p.G13E 0.25 tolerated(0.07) benign(0.092) TCGA-EE-A29B-06 20 43047062 43047062 C T HNF4A Intron 0.46 TCGA-EE-A29B-06 20 43881011 43881011 G A SLPI 3'UTR 0.35 TCGA-EE-A29B-06 20 45702837 45702837 C T EYA2 Missense_Mutation p.P175L 0.55 tolerated(0.05) benign(0.127) TCGA-EE-A29B-06 20 50701144 50701144 G A ZFP64 Silent p.V630V 0.49 TCGA-EE-A29B-06 20 60921769 60921769 T A LAMA5 Missense_Mutation p.Y387F 0.47 benign(0.326) TCGA-EE-A29B-06 20 61833879 61833879 C T YTHDF1 Silent p.K471K 0.34 TCGA-EE-A29B-06 20 62551401 62551401 C T DNAJC5 Intron 0.17 TCGA-EE-A29B-06 20 62729885 62729885 C T OPRL1 Silent p.F282F 0.41 TCGA-EE-A29B-06 20 62737496 62737496 A G NPBWR2 Missense_Mutation p.V230A 0.55 tolerated(0.37) benign(0.007) TCGA-EE-A29B-06 20 62738130 62738130 G A NPBWR2 Missense_Mutation p.P19S 0.25 tolerated(0.37) benign(0.001) TCGA-EE-A29B-06 20 62895799 62895799 C T PCMTD2 Missense_Mutation p.H109Y 0.33 deleterious(0.01) possibly_damaging(0.483) TCGA-EE-A29B-06 21 10951412 10951412 G A TPTE Silent p.F100F 0.28 TCGA-EE-A29B-06 21 31588280 31588280 G A CLDN8 5'UTR 0.58 TCGA-EE-A29B-06 21 37518652 37518652 T G CBR3 Missense_Mutation p.C226G 0.40 deleterious(0) benign(0.399) TCGA-EE-A29B-06 21 39947671 39947671 G A ERG Intron 0.41 TCGA-EE-A29B-06 21 41301038 41301038 G A PCP4 3'UTR 0.33 TCGA-EE-A29B-06 21 45861607 45861607 C T TRPM2 Silent p.I1473I 0.47 TCGA-EE-A29B-06 21 46595714 46595714 C T ADARB1 Missense_Mutation p.P33L 0.39 tolerated(0.58) possibly_damaging(0.9) TCGA-EE-A29B-06 22 25313627 25313627 C T SGSM1 Silent p.I1032I 0.50 TCGA-EE-A29B-06 22 30951123 30951123 C T GAL3ST1 Silent p.Q363Q 0.56 TCGA-EE-A29B-06 22 35478599 35478599 C T ISX Silent p.Y106Y 0.47 TCGA-EE-A29B-06 22 45683325 45683325 G A UPK3A Missense_Mutation p.E161K 0.62 tolerated(0.67) benign(0.017) TCGA-EE-A29B-06 22 46671153 46671153 C T TTC38 Missense_Mutation p.P125L 0.39 tolerated(0.09) benign(0.005) TCGA-EE-A29B-06 22 50961498 50961498 G A NCAPH2 Missense_Mutation p.R528Q 0.59 tolerated(0.2) benign(0.032) TCGA-EE-A29B-06 2 103119958 103119959 AT - SLC9A4 Frame_Shift_Del p.I258Rfs*44 0.29 TCGA-EE-A29B-06 2 103378704 103378704 G A TMEM182 Missense_Mutation p.G10R 0.56 deleterious(0) probably_damaging(0.979) TCGA-EE-A29B-06 2 108499251 108499251 G A RGPD4 Missense_Mutation p.E1730K 0.43 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-EE-A29B-06 2 112614438 112614438 C T ANAPC1 Missense_Mutation p.D462N 0.18 deleterious(0.04) benign(0.016) TCGA-EE-A29B-06 2 112945036 112945036 A G FBLN7 Missense_Mutation p.N425D 0.41 deleterious(0) benign(0.097) TCGA-EE-A29B-06 2 114391763 114391763 C T RABL2A Silent p.T57T 0.29 TCGA-EE-A29B-06 2 11924042 11924042 C T LPIN1 Missense_Mutation p.P500L 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 2 142567932 142567932 C T LRP1B Missense_Mutation p.D41N 0.59 possibly_damaging(0.831) TCGA-EE-A29B-06 2 1497609 1497609 C T TPO Missense_Mutation p.R602C 0.33 deleterious(0) probably_damaging(0.977) TCGA-EE-A29B-06 2 160808038 160808038 G A PLA2R1 Missense_Mutation p.T1118I 0.65 tolerated(0.17) benign(0.077) TCGA-EE-A29B-06 2 165765251 165765251 G A SLC38A11 Missense_Mutation p.L276F 0.53 tolerated(0.32) possibly_damaging(0.76) TCGA-EE-A29B-06 2 169833117 169833117 G C ABCB11 Silent p.T426T 0.44 TCGA-EE-A29B-06 2 171073890 171073890 C T MYO3B Silent p.F196F 0.41 TCGA-EE-A29B-06 2 171258164 171258164 C T MYO3B Missense_Mutation p.R698C 0.46 tolerated(0.06) possibly_damaging(0.709) TCGA-EE-A29B-06 2 175333794 175333794 A T GPR155 Missense_Mutation p.I343K 0.54 deleterious(0) possibly_damaging(0.781) TCGA-EE-A29B-06 2 179448448 179448448 C T TTN Missense_Mutation p.A21821T 0.50 TCGA-EE-A29B-06 2 179473133 179473133 C T TTN Missense_Mutation p.E17493K 0.56 TCGA-EE-A29B-06 2 179576684 179576684 G A TTN Silent p.F9291F 0.46 TCGA-EE-A29B-06 2 179590751 179590751 G A TTN Silent p.F6766F 0.36 TCGA-EE-A29B-06 2 179634897 179634897 G A TTN Missense_Mutation p.S2844L 0.44 TCGA-EE-A29B-06 2 179636110 179636110 G A TTN Silent p.S2648S 0.54 TCGA-EE-A29B-06 2 179641325 179641325 C T TTN Missense_Mutation p.E1756K 0.53 TCGA-EE-A29B-06 2 179642401 179642401 G A TTN Intron 0.53 TCGA-EE-A29B-06 2 179650658 179650658 C T TTN Missense_Mutation p.A763T 0.45 TCGA-EE-A29B-06 2 182766878 182766878 T C SSFA2 Silent p.S366S 0.44 TCGA-EE-A29B-06 2 183104852 183104852 C T PDE1A Missense_Mutation p.G128E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 2 183387031 183387031 C T PDE1A Missense_Mutation p.E25K 0.32 tolerated_low_confidence(0.61) benign(0.005) TCGA-EE-A29B-06 2 186673610 186673610 G A FSIP2 Missense_Mutation p.G6615E 0.33 probably_damaging(1) TCGA-EE-A29B-06 2 190717402 190717402 C T PMS1 Missense_Mutation p.P241S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 2 196636525 196636525 G A DNAH7 Silent p.F3764F 0.49 TCGA-EE-A29B-06 2 201473982 201473982 C T AOX1 Intron 0.73 TCGA-EE-A29B-06 2 203839170 203839170 C T CARF Missense_Mutation p.S482F 0.43 deleterious(0) possibly_damaging(0.902) TCGA-EE-A29B-06 2 204231698 204231698 C T ABI2 Silent p.V72V 0.62 TCGA-EE-A29B-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-EE-A29B-06 2 219321865 219321865 G A USP37 Missense_Mutation p.S888L 0.59 deleterious(0) possibly_damaging(0.804) TCGA-EE-A29B-06 2 219888018 219888018 G A CCDC108 Silent p.L911L 0.36 TCGA-EE-A29B-06 2 220439751 220439751 C T INHA Missense_Mutation p.L202F 0.53 tolerated(0.71) benign(0.005) TCGA-EE-A29B-06 2 227660787 227660787 G A IRS1 Missense_Mutation p.P890S 0.59 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 2 233272013 233272013 G A ALPPL2 Missense_Mutation p.V68M 0.38 tolerated(0.05) probably_damaging(0.935) TCGA-EE-A29B-06 2 234628081 234628081 G A UGT1A4 Missense_Mutation p.M205I 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A29B-06 2 240984890 240984890 G A OR6B3 Silent p.F200F 0.35 TCGA-EE-A29B-06 2 26688892 26688892 G A OTOF Missense_Mutation p.A1518V 0.52 tolerated(1) benign(0.032) TCGA-EE-A29B-06 2 31189136 31189136 G A GALNT14 Missense_Mutation p.P116L 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29B-06 2 40656543 40656543 C T SLC8A1 Missense_Mutation p.G293E 0.43 tolerated(0.06) possibly_damaging(0.533) TCGA-EE-A29B-06 2 40656647 40656647 A C SLC8A1 Missense_Mutation p.F258L 0.50 tolerated(0.3) benign(0.378) TCGA-EE-A29B-06 2 43927606 43927606 G A PLEKHH2 Missense_Mutation p.M503I 0.45 tolerated(0.15) benign(0.005) TCGA-EE-A29B-06 2 44028838 44028838 C T DYNC2LI1 Silent p.F264F 0.43 TCGA-EE-A29B-06 2 44040275 44040275 C T ABCG5 Missense_Mutation p.D646N 0.41 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-EE-A29B-06 2 50733643 50733643 C T NRXN1 Silent p.Q869Q 0.60 TCGA-EE-A29B-06 2 64863655 64863655 G A SERTAD2 Silent p.P117P 0.36 TCGA-EE-A29B-06 2 68621305 68621305 A T PLEK Missense_Mutation p.N305Y 0.40 deleterious(0.02) benign(0.093) TCGA-EE-A29B-06 2 70131502 70131502 A G SNRNP27 3'UTR 0.50 TCGA-EE-A29B-06 2 73118625 73118625 G A SPR Missense_Mutation p.E249K 0.36 tolerated(0.69) benign(0) TCGA-EE-A29B-06 2 88425737 88425737 C T FABP1 Silent p.G66G 0.42 TCGA-EE-A29B-06 2 96950138 96950138 G A SNRNP200 Silent p.L1450L 0.44 TCGA-EE-A29B-06 2 98206009 98206009 T C ANKRD36B RNA 0.30 TCGA-EE-A29B-06 2 99012791 99012791 G A CNGA3 Silent p.L386L 0.51 TCGA-EE-A29B-06 2 99272821 99272821 C T MGAT4A Missense_Mutation p.R231K 0.41 deleterious(0) probably_damaging(0.912) TCGA-EE-A29B-06 3 10379942 10379942 A C ATP2B2 Missense_Mutation p.V1113G 0.44 tolerated(0.44) benign(0.055) TCGA-EE-A29B-06 3 10967706 10967706 T A SLC6A11 Missense_Mutation p.F379L 0.46 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 3 113878691 113878691 G A DRD3 Silent p.F98F 0.44 TCGA-EE-A29B-06 3 122004047 122004047 G A CASR 3'UTR 0.50 TCGA-EE-A29B-06 3 123419471 123419471 G A MYLK Silent p.P948P 0.54 TCGA-EE-A29B-06 3 124536491 124536491 G A ITGB5 Nonsense_Mutation p.Q369* 0.34 TCGA-EE-A29B-06 3 124536493 124536493 A T ITGB5 Missense_Mutation p.I368N 0.34 deleterious(0) probably_damaging(0.98) TCGA-EE-A29B-06 3 126224817 126224817 C T UROC1 Missense_Mutation p.G214S 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 3 12650363 12650363 A T RAF1 Missense_Mutation p.N161K 0.44 deleterious(0.05) benign(0.196) TCGA-EE-A29B-06 3 130282280 130282280 G A COL6A6 Missense_Mutation p.D145N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 3 132294746 132294746 G A ACAD11 Missense_Mutation p.S624F 0.39 deleterious(0) possibly_damaging(0.866) TCGA-EE-A29B-06 3 133478078 133478078 G A TF Missense_Mutation p.E370K 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 3 13679062 13679062 G A FBLN2 Silent p.T1113T 0.38 TCGA-EE-A29B-06 3 140277621 140277621 G A CLSTN2 Missense_Mutation p.G655R 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 3 142537115 142537115 G A PCOLCE2 3'UTR 0.48 TCGA-EE-A29B-06 3 148459199 148459199 G A AGTR1 Missense_Mutation p.R126Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 3 151161648 151161648 T C IGSF10 Missense_Mutation p.Q1696R 0.68 tolerated(0.5) benign(0.022) TCGA-EE-A29B-06 3 15467907 15467907 C T METTL6 Missense_Mutation p.E38K 0.43 tolerated(0.05) benign(0.17) TCGA-EE-A29B-06 3 155560232 155560232 G A SLC33A1 Silent p.L318L 0.43 TCGA-EE-A29B-06 3 157178091 157178091 G A VEPH1 Silent p.F136F 0.35 TCGA-EE-A29B-06 3 160156874 160156874 C T TRIM59 Missense_Mutation p.C33Y 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 3 164764781 164764781 G A SI Missense_Mutation p.P579S 0.33 tolerated(0.11) benign(0.015) TCGA-EE-A29B-06 3 167184935 167184935 T C SERPINI2 Missense_Mutation p.E129G 0.45 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A29B-06 3 168834174 168834174 G A MECOM Missense_Mutation p.P373S 0.42 tolerated(0.07) possibly_damaging(0.612) TCGA-EE-A29B-06 3 18393686 18393686 C G SATB1 Missense_Mutation p.G526A 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 3 184100507 184100507 G A CHRD Silent p.E309E 0.45 TCGA-EE-A29B-06 3 185161253 185161253 C T MAP3K13 Missense_Mutation p.P227L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 3 185190956 185190956 G A MAP3K13 Missense_Mutation p.E613K 0.45 tolerated(0.15) benign(0.031) TCGA-EE-A29B-06 3 189526085 189526085 C T TP63 Silent p.L117L 0.37 TCGA-EE-A29B-06 3 193023421 193023421 C T ATP13A5 Missense_Mutation p.E869K 0.43 deleterious(0.01) possibly_damaging(0.802) TCGA-EE-A29B-06 3 193023422 193023422 T A ATP13A5 Silent p.S868S 0.43 TCGA-EE-A29B-06 3 195453261 195453261 C T MUC20 Missense_Mutation p.T596I 0.16 deleterious(0.03) unknown(0) TCGA-EE-A29B-06 3 19575436 19575436 C T KCNH8 Nonsense_Mutation p.Q1057* 0.51 TCGA-EE-A29B-06 3 196555215 196555215 C T PAK2 Missense_Mutation p.P505L 0.36 deleterious(0.01) possibly_damaging(0.636) TCGA-EE-A29B-06 3 197260398 197260398 G A BDH1 Missense_Mutation p.P40S 0.46 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A29B-06 3 38347473 38347473 G A SLC22A14 5'UTR 0.48 TCGA-EE-A29B-06 3 38597168 38597168 C T SCN5A Silent p.Q1507Q 0.35 TCGA-EE-A29B-06 3 38608041 38608041 C T SCN5A Silent p.K1233K 0.45 TCGA-EE-A29B-06 3 38891948 38891948 C T SCN11A Intron 0.31 TCGA-EE-A29B-06 3 38951638 38951638 C T SCN11A Silent p.T340T 0.42 TCGA-EE-A29B-06 3 49148967 49148967 G A USP19 Silent p.S1059S 0.83 TCGA-EE-A29B-06 3 74350817 74350817 A G CNTN3 Silent p.G642G 0.42 TCGA-EE-A29B-06 3 97887590 97887590 G A OR5H15 Missense_Mutation p.G16E 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A29B-06 4 100205629 100205629 G A ADH1A Missense_Mutation p.S165L 0.50 deleterious(0) probably_damaging(0.946) TCGA-EE-A29B-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29B-06 4 102951364 102951364 C T BANK1 Silent p.P614P 0.40 TCGA-EE-A29B-06 4 103971423 103971423 G A SLC9B2 Missense_Mutation p.R187C 0.52 deleterious(0) probably_damaging(0.997) TCGA-EE-A29B-06 4 111469471 111469471 C T ENPEP Missense_Mutation p.P714S 0.37 tolerated(0.18) benign(0.392) TCGA-EE-A29B-06 4 119259455 119259455 G A PRSS12 Missense_Mutation p.R173C 0.39 tolerated(0.19) benign(0.005) TCGA-EE-A29B-06 4 138442490 138442490 G A PCDH18 Missense_Mutation p.S1034F 0.41 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A29B-06 4 146044172 146044172 G A ABCE1 Splice_Site p.X422_splice 0.41 TCGA-EE-A29B-06 4 148985629 148985629 C T ARHGAP10 Missense_Mutation p.S748F 0.56 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 4 152025418 152025418 T C RPS3A Missense_Mutation p.L218P 0.30 deleterious(0.02) possibly_damaging(0.693) TCGA-EE-A29B-06 4 154514996 154514996 C T KIAA0922 Silent p.F656F 0.53 TCGA-EE-A29B-06 4 155486985 155486985 G A FGB Missense_Mutation p.R47Q 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29B-06 4 164247459 164247459 G A NPY1R Missense_Mutation p.S83F 0.52 deleterious(0) probably_damaging(0.996) TCGA-EE-A29B-06 4 167663193 167663193 C T SPOCK3 Missense_Mutation p.E320K 0.42 deleterious(0) possibly_damaging(0.841) TCGA-EE-A29B-06 4 17506007 17506007 G A QDPR Missense_Mutation p.S97F 0.90 deleterious(0.02) possibly_damaging(0.895) TCGA-EE-A29B-06 4 55956127 55956127 C T KDR Missense_Mutation p.G1063E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 4 55973926 55973926 C T KDR Missense_Mutation p.E464K 0.39 tolerated(0.3) benign(0.185) TCGA-EE-A29B-06 4 69681805 69681805 G A UGT2B10 Missense_Mutation p.G23E 0.41 deleterious(0.05) possibly_damaging(0.823) TCGA-EE-A29B-06 4 70066197 70066197 C T UGT2B11 Nonsense_Mutation p.W517* 0.51 TCGA-EE-A29B-06 4 70346309 70346309 G A UGT2B4 3'UTR 0.50 TCGA-EE-A29B-06 4 71099923 71099923 G A FDCSP 3'UTR 0.65 TCGA-EE-A29B-06 4 74318310 74318310 C T AFP Nonsense_Mutation p.Q541* 0.50 TCGA-EE-A29B-06 4 75673343 75673343 G A BTC Missense_Mutation p.R149C 0.38 deleterious(0.04) benign(0.109) TCGA-EE-A29B-06 4 76781752 76781752 G A PPEF2 3'UTR 0.42 TCGA-EE-A29B-06 4 80327758 80327758 C T GK2 Missense_Mutation p.G533R 0.45 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29B-06 4 8621229 8621229 A G CPZ Missense_Mutation p.E615G 1.00 tolerated(0.08) benign(0.002) TCGA-EE-A29B-06 4 94411873 94411873 T C GRID2 Missense_Mutation p.Y648H 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 5 101774466 101774466 C T SLCO6A1 Splice_Site p.X378_splice 0.26 TCGA-EE-A29B-06 5 121409775 121409775 A C LOX Missense_Mutation p.F323C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 5 121758666 121758666 G A SNCAIP Silent p.R78R 0.56 TCGA-EE-A29B-06 5 128956396 128956396 C T ADAMTS19 Missense_Mutation p.L516F 0.46 tolerated(0.13) probably_damaging(0.968) TCGA-EE-A29B-06 5 135587556 135587556 C T TRPC7 Missense_Mutation p.E454K 0.39 deleterious(0) possibly_damaging(0.864) TCGA-EE-A29B-06 5 136328173 136328173 T C SPOCK1 Missense_Mutation p.R236G 0.46 tolerated(0.6) possibly_damaging(0.551) TCGA-EE-A29B-06 5 13901522 13901522 G A DNAH5 Missense_Mutation p.R631C 0.52 possibly_damaging(0.898) TCGA-EE-A29B-06 5 13901523 13901523 G A DNAH5 Silent p.A630A 0.50 TCGA-EE-A29B-06 5 139917070 139917070 G A ANKHD1 Missense_Mutation p.R2375Q 0.46 probably_damaging(0.984) TCGA-EE-A29B-06 5 140168112 140168112 G A PCDHA1 Missense_Mutation p.G746E 0.59 deleterious_low_confidence(0.04) possibly_damaging(0.74) TCGA-EE-A29B-06 5 140215010 140215010 C T PCDHA7 Missense_Mutation p.P348S 0.46 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A29B-06 5 140221708 140221708 G A PCDHA8 Missense_Mutation p.D268N 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A29B-06 5 140255506 140255506 C T PCDHA12 Missense_Mutation p.S150F 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-EE-A29B-06 5 140431863 140431863 G A PCDHB1 Missense_Mutation p.D270N 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 5 140557590 140557590 C T PCDHB8 5'UTR 0.12 TCGA-EE-A29B-06 5 140558451 140558451 C T PCDHB8 Missense_Mutation p.S279F 0.07 tolerated_low_confidence(0.07) benign(0.027) TCGA-EE-A29B-06 5 140563018 140563018 A T PCDHB16 Missense_Mutation p.N295I 0.44 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-EE-A29B-06 5 140589140 140589140 C T PCDHB12 Missense_Mutation p.P221S 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.483) TCGA-EE-A29B-06 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.54 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-EE-A29B-06 5 140720249 140720249 G A PCDHGA2 Missense_Mutation p.G571S 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.616) TCGA-EE-A29B-06 5 140723683 140723683 C T PCDHGA3 Missense_Mutation p.S28F 0.42 tolerated_low_confidence(0.05) benign(0.07) TCGA-EE-A29B-06 5 141041668 141041668 A C ARAP3 Silent p.R985R 0.44 TCGA-EE-A29B-06 5 14749296 14749296 A G ANKH Silent p.S269S 0.37 TCGA-EE-A29B-06 5 149440464 149440464 C T CSF1R Missense_Mutation p.E644K 0.36 tolerated(0.41) benign(0.052) TCGA-EE-A29B-06 5 160039922 160039922 C T ATP10B Silent p.G888G 0.43 TCGA-EE-A29B-06 5 161116303 161116303 C T GABRA6 Missense_Mutation p.P164S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 5 170736745 170736745 C T TLX3 Missense_Mutation p.P126S 0.46 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29B-06 5 180374621 180374621 C T BTNL8 Silent p.F261F 0.46 TCGA-EE-A29B-06 5 19473310 19473310 C T CDH18 3'UTR 0.50 TCGA-EE-A29B-06 5 19473405 19473405 C T CDH18 Missense_Mutation p.G768E 0.46 tolerated(0.16) benign(0.197) TCGA-EE-A29B-06 5 19483628 19483628 C T CDH18 Missense_Mutation p.R555K 0.33 tolerated(0.06) benign(0.004) TCGA-EE-A29B-06 5 31323113 31323113 G A CDH6 Missense_Mutation p.D691N 0.44 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A29B-06 5 38510728 38510728 C T LIFR Missense_Mutation p.V277M 0.65 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A29B-06 5 45262699 45262699 G A HCN1 Missense_Mutation p.P666L 0.46 deleterious_low_confidence(0.03) benign(0.002) TCGA-EE-A29B-06 5 71492061 71492061 A G MAP1B Missense_Mutation p.E960G 0.42 benign(0.253) TCGA-EE-A29B-06 5 75427872 75427872 G A SV2C Missense_Mutation p.M99I 0.43 tolerated(0.37) benign(0) TCGA-EE-A29B-06 5 76129230 76129230 C T F2RL1 Silent p.I266I 0.42 TCGA-EE-A29B-06 5 76703223 76703223 C T PDE8B Missense_Mutation p.R436C 0.41 deleterious(0) probably_damaging(0.932) TCGA-EE-A29B-06 5 78251203 78251203 G A ARSB Silent p.S271S 0.44 TCGA-EE-A29B-06 5 78423682 78423682 T C BHMT Missense_Mutation p.Y305H 0.40 tolerated(0.36) benign(0.243) TCGA-EE-A29B-06 5 80074565 80074565 C T MSH3 Missense_Mutation p.S782F 0.41 deleterious(0) probably_damaging(0.935) TCGA-EE-A29B-06 5 98229217 98229217 C T CHD1 Missense_Mutation p.D632N 0.27 tolerated(0.1) benign(0.262) TCGA-EE-A29B-06 6 116910006 116910006 C T RWDD1 Missense_Mutation p.A91V 0.67 tolerated(0.26) benign(0.377) TCGA-EE-A29B-06 6 136599049 136599049 C T BCLAF1 Missense_Mutation p.D324N 0.23 tolerated(0.22) benign(0.023) TCGA-EE-A29B-06 6 146755552 146755552 C T GRM1 Missense_Mutation p.P1069S 0.91 tolerated_low_confidence(0.42) benign(0.001) TCGA-EE-A29B-06 6 160664704 160664704 C T SLC22A2 Missense_Mutation p.M393I 0.76 tolerated(1) benign(0) TCGA-EE-A29B-06 6 168347581 168347581 A G MLLT4 Missense_Mutation p.N1178D 0.84 tolerated_low_confidence(0.11) benign(0.045) TCGA-EE-A29B-06 6 24551733 24551733 C T KIAA0319 Missense_Mutation p.R990K 0.22 tolerated(0.35) possibly_damaging(0.709) TCGA-EE-A29B-06 6 25849613 25849613 G A SLC17A3 Missense_Mutation p.L451F 0.26 tolerated(0.42) benign(0.02) TCGA-EE-A29B-06 6 25915842 25915842 G A SLC17A2 Intron 0.43 TCGA-EE-A29B-06 6 30671832 30671832 T A MDC1 Missense_Mutation p.I1710F 0.43 deleterious(0.01) benign(0.28) TCGA-EE-A29B-06 6 31762896 31762896 C T VARS Nonsense_Mutation p.W33* 0.42 TCGA-EE-A29B-06 6 32007573 32007573 G A CYP21A2 Silent p.K233K 0.15 TCGA-EE-A29B-06 6 32030254 32030254 C T TNXB Missense_Mutation p.G2283E 0.50 benign(0.009) TCGA-EE-A29B-06 6 33052919 33052919 T G HLA-DPB1 Missense_Mutation p.V186G 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 6 36710090 36710090 G A CPNE5 Silent p.S579S 0.32 TCGA-EE-A29B-06 6 42942632 42942632 G A PEX6 Missense_Mutation p.R343W 0.55 deleterious(0.04) benign(0.339) TCGA-EE-A29B-06 6 49586937 49586937 C T RHAG Missense_Mutation p.G99E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 6 50011342 50011342 G A DEFB112 Silent p.I96I 0.56 TCGA-EE-A29B-06 6 53989384 53989384 C T MLIP Silent p.F111F 0.50 TCGA-EE-A29B-06 6 54735174 54735174 C T FAM83B Nonsense_Mutation p.Q44* 0.22 TCGA-EE-A29B-06 6 55360292 55360292 G A HMGCLL1 Silent p.I270I 0.50 TCGA-EE-A29B-06 6 57072428 57072428 C T RAB23 Missense_Mutation p.R80Q 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29B-06 6 73751729 73751729 G A KCNQ5 Missense_Mutation p.R187Q 0.89 deleterious(0) probably_damaging(0.998) TCGA-EE-A29B-06 6 83947538 83947538 C T ME1 Silent p.G308G 0.82 TCGA-EE-A29B-06 6 96651899 96651899 G A FUT9 Missense_Mutation p.E290K 1.00 deleterious(0.02) benign(0.14) TCGA-EE-A29B-06 7 100678247 100678247 C T MUC17 Missense_Mutation p.P1184S 0.27 unknown(0) TCGA-EE-A29B-06 7 100678460 100678460 G A MUC17 Missense_Mutation p.E1255K 0.39 unknown(0) TCGA-EE-A29B-06 7 103389894 103389894 A C RELN Missense_Mutation p.L212R 0.38 tolerated(0.61) benign(0.017) TCGA-EE-A29B-06 7 107253875 107253875 C T BCAP29 Nonsense_Mutation p.Q230* 0.39 TCGA-EE-A29B-06 7 112535637 112535637 C A C7orf60 Nonsense_Mutation p.E154* 0.35 TCGA-EE-A29B-06 7 120901683 120901683 C T CPED1 Intron 0.40 TCGA-EE-A29B-06 7 120979033 120979033 G A WNT16 Silent p.K244K 0.27 TCGA-EE-A29B-06 7 126086284 126086284 G A GRM8 Missense_Mutation p.A858V 0.52 deleterious(0) benign(0.028) TCGA-EE-A29B-06 7 128040203 128040203 G A IMPDH1 Missense_Mutation p.P274S 0.45 tolerated(0.2) benign(0.115) TCGA-EE-A29B-06 7 128487761 128487761 C T FLNC Silent p.F1433F 0.45 TCGA-EE-A29B-06 7 135047860 135047860 G A CNOT4 Missense_Mutation p.A640V 0.44 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A29B-06 7 135261829 135261829 A G NUP205 Missense_Mutation p.K201E 0.65 deleterious(0.04) possibly_damaging(0.85) TCGA-EE-A29B-06 7 137600734 137600734 T C CREB3L2 Missense_Mutation p.Y115C 0.50 tolerated(0.18) possibly_damaging(0.594) TCGA-EE-A29B-06 7 138711564 138711564 G A ZC3HAV1L Missense_Mutation p.S259L 0.46 tolerated(0.11) benign(0.014) TCGA-EE-A29B-06 7 141635679 141635679 C T CLEC5A Missense_Mutation p.E94K 0.45 tolerated(1) benign(0.003) TCGA-EE-A29B-06 7 141721425 141721425 G A MGAM Missense_Mutation p.E200K 0.53 tolerated(0.07) benign(0.319) TCGA-EE-A29B-06 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A29B-06 7 141765518 141765518 G A MGAM Intron 0.36 TCGA-EE-A29B-06 7 142111816 142111816 C T TRBV5-7 Missense_Mutation p.G15E 0.31 deleterious(0.03) benign(0.113) TCGA-EE-A29B-06 7 142131665 142131665 C T TRBV5-6 Silent p.L30L 0.48 TCGA-EE-A29B-06 7 142428803 142428803 C T TRBV28 Nonsense_Mutation p.R55* 0.43 TCGA-EE-A29B-06 7 142568295 142568295 C T EPHB6 Silent p.A938A 0.46 TCGA-EE-A29B-06 7 142568296 142568296 C T EPHB6 Missense_Mutation p.L939F 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29B-06 7 143095042 143095042 G A EPHA1 Missense_Mutation p.P529L 0.42 tolerated(0.34) benign(0.193) TCGA-EE-A29B-06 7 143792319 143792319 G A OR2A12 Missense_Mutation p.G40E 0.38 deleterious(0.02) possibly_damaging(0.621) TCGA-EE-A29B-06 7 146997240 146997240 G A CNTNAP2 Silent p.G452G 0.41 TCGA-EE-A29B-06 7 147600773 147600773 C T CNTNAP2 Missense_Mutation p.P739S 0.33 tolerated(0.87) benign(0.002) TCGA-EE-A29B-06 7 149523807 149523807 C T SSPO RNA 0.29 TCGA-EE-A29B-06 7 150174815 150174815 G A GIMAP8 Missense_Mutation p.E649K 0.43 tolerated(0.28) benign(0.033) TCGA-EE-A29B-06 7 150554372 150554372 G A AOC1 Missense_Mutation p.G272R 0.36 tolerated_low_confidence(0.24) benign(0.01) TCGA-EE-A29B-06 7 152012382 152012382 G A KMT2C Missense_Mutation p.S144F 0.40 possibly_damaging(0.898) TCGA-EE-A29B-06 7 22985124 22985124 G A FAM126A 3'UTR 0.44 TCGA-EE-A29B-06 7 27147736 27147736 T C HOXA3 Missense_Mutation p.N377S 0.30 tolerated(0.88) benign(0.142) TCGA-EE-A29B-06 7 29927732 29927732 C T WIPF3 Missense_Mutation p.S383L 0.59 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29B-06 7 31793104 31793104 G A PDE1C Missense_Mutation p.S735L 0.47 tolerated_low_confidence(0.29) benign(0) TCGA-EE-A29B-06 7 31815313 31815313 G A PDE1C Missense_Mutation p.P702L 0.37 tolerated_low_confidence(0.14) benign(0.014) TCGA-EE-A29B-06 7 45717849 45717849 C T ADCY1 Silent p.L629L 0.38 TCGA-EE-A29B-06 7 48506563 48506563 G A ABCA13 Missense_Mutation p.D4276N 0.35 benign(0.161) TCGA-EE-A29B-06 7 48545956 48545956 A T ABCA13 Missense_Mutation p.Y4439F 0.48 probably_damaging(1) TCGA-EE-A29B-06 7 4947073 4947073 C T MMD2 Missense_Mutation p.R256K 0.41 tolerated(0.81) benign(0.001) TCGA-EE-A29B-06 7 5269352 5269352 C T WIPI2 Missense_Mutation p.S412L 0.46 tolerated(0.09) benign(0) TCGA-EE-A29B-06 7 53103700 53103700 C T POM121L12 Silent p.L112L 0.53 TCGA-EE-A29B-06 7 63982102 63982102 G A ZNF680 Missense_Mutation p.H344Y 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29B-06 7 72361280 72361280 C T POM121 5'UTR 0.16 TCGA-EE-A29B-06 7 75511190 75511190 C T RHBDD2 Silent p.I74I 0.34 TCGA-EE-A29B-06 7 92734852 92734852 G A SAMD9 Missense_Mutation p.P187S 0.40 tolerated(0.05) benign(0.064) TCGA-EE-A29B-06 7 94827677 94827677 G A PPP1R9A Missense_Mutation p.E591K 0.48 deleterious(0) probably_damaging(0.97) TCGA-EE-A29B-06 7 94913509 94913509 C T PPP1R9A Missense_Mutation p.S1159L 0.32 tolerated(0.17) benign(0.281) TCGA-EE-A29B-06 7 95705405 95705405 G A DYNC1I1 Missense_Mutation p.D533N 0.50 deleterious(0.04) benign(0.437) TCGA-EE-A29B-06 7 98254433 98254433 G A NPTX2 Silent p.L281L 0.51 TCGA-EE-A29B-06 7 99367821 99367821 G A CYP3A4 Missense_Mutation p.S119F 0.47 tolerated(0.14) possibly_damaging(0.886) TCGA-EE-A29B-06 8 100861088 100861088 G A VPS13B Missense_Mutation p.G3368R 0.55 deleterious(0.03) benign(0) TCGA-EE-A29B-06 8 100861089 100861089 G A VPS13B Missense_Mutation p.G3368E 0.56 deleterious(0.04) benign(0.007) TCGA-EE-A29B-06 8 101282222 101282222 A T RNF19A Nonsense_Mutation p.C301* 0.46 TCGA-EE-A29B-06 8 10390430 10390430 G T PRSS55 Missense_Mutation p.V205L 0.37 tolerated(0.2) benign(0.005) TCGA-EE-A29B-06 8 10396229 10396229 G A PRSS55 Missense_Mutation p.E329K 0.44 tolerated(0.61) benign(0.008) TCGA-EE-A29B-06 8 110477438 110477438 G A PKHD1L1 Missense_Mutation p.E2793K 0.50 deleterious(0) probably_damaging(0.982) TCGA-EE-A29B-06 8 11418875 11418875 A G BLK Missense_Mutation p.N365S 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29B-06 8 120118142 120118142 G A COLEC10 Missense_Mutation p.M182I 0.55 tolerated(0.13) benign(0.007) TCGA-EE-A29B-06 8 133044159 133044159 C T OC90 Missense_Mutation p.G334R 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 8 144332413 144332413 C T ZFP41 Nonsense_Mutation p.Q134* 0.38 TCGA-EE-A29B-06 8 17396429 17396429 C T SLC7A2 Silent p.L32L 0.37 TCGA-EE-A29B-06 8 2040257 2040257 G A MYOM2 Missense_Mutation p.E638K 0.43 tolerated(0.65) benign(0.031) TCGA-EE-A29B-06 8 22459810 22459810 C T C8orf58 Silent p.S288S 0.40 TCGA-EE-A29B-06 8 22884668 22884668 G A TNFRSF10B Missense_Mutation p.P305L 0.45 deleterious(0.01) possibly_damaging(0.799) TCGA-EE-A29B-06 8 23225612 23225612 C T LOXL2 Missense_Mutation p.D85N 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 8 24201063 24201063 C T ADAM28 Silent p.I652I 0.33 TCGA-EE-A29B-06 8 24259437 24259437 C T ADAMDEC1 Silent p.F384F 0.33 TCGA-EE-A29B-06 8 24346766 24346766 C T ADAM7 Missense_Mutation p.P396S 0.50 tolerated(0.4) benign(0.007) TCGA-EE-A29B-06 8 27917983 27917983 C T NUGGC Missense_Mutation p.V353I 0.35 tolerated(0.17) benign(0.075) TCGA-EE-A29B-06 8 37914620 37914620 G A EIF4EBP1 Missense_Mutation p.R56Q 0.36 deleterious(0) benign(0.221) TCGA-EE-A29B-06 8 42586826 42586826 G A CHRNB3 Missense_Mutation p.E126K 0.42 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A29B-06 8 55534033 55534033 G C RP1 Silent p.A169A 0.42 TCGA-EE-A29B-06 8 57129894 57129894 C T CHCHD7 Missense_Mutation p.S78F 0.37 tolerated(0.08) probably_damaging(0.965) TCGA-EE-A29B-06 8 67547093 67547093 G A VCPIP1 Silent p.A1104A 0.43 TCGA-EE-A29B-06 8 8234870 8234871 - GCCGCT SGK223 In_Frame_Ins p.G350delinsERR 0.10 TCGA-EE-A29B-06 8 82605900 82605900 G A SLC10A5 Silent p.F436F 0.28 TCGA-EE-A29B-06 8 87623882 87623882 C T CNGB3 Missense_Mutation p.M532I 0.41 deleterious(0.01) benign(0.082) TCGA-EE-A29B-06 8 95262537 95262537 C T GEM 3'UTR 0.38 TCGA-EE-A29B-06 8 98828297 98828297 C T LAPTM4B Silent p.A190A 0.39 TCGA-EE-A29B-06 9 107288987 107288987 G A OR13C4 Silent p.F168F 0.47 TCGA-EE-A29B-06 9 107380040 107380040 C T OR13C9 Nonsense_Mutation p.W149* 0.41 TCGA-EE-A29B-06 9 113221378 113221378 C T SVEP1 Missense_Mutation p.G1113E 0.39 probably_damaging(1) TCGA-EE-A29B-06 9 114090649 114090649 C A OR2K2 Missense_Mutation p.G22V 0.39 tolerated(0.1) benign(0.002) TCGA-EE-A29B-06 9 114090650 114090650 C T OR2K2 Missense_Mutation p.G22R 0.40 tolerated(0.37) benign(0) TCGA-EE-A29B-06 9 117846683 117846683 C T TNC Missense_Mutation p.E646K 0.39 deleterious(0.02) possibly_damaging(0.679) TCGA-EE-A29B-06 9 118997498 118997498 C T PAPPA Missense_Mutation p.P772S 0.47 tolerated(0.69) possibly_damaging(0.641) TCGA-EE-A29B-06 9 123163155 123163155 G A CDK5RAP2 Silent p.H1772H 0.33 TCGA-EE-A29B-06 9 123605157 123605157 C T PSMD5 Missense_Mutation p.E11K 0.36 tolerated(0.18) unknown(0) TCGA-EE-A29B-06 9 125391016 125391016 G T OR1B1 Missense_Mutation p.Q267K 0.60 tolerated(0.3) possibly_damaging(0.754) TCGA-EE-A29B-06 9 125486832 125486832 C T OR1L4 Silent p.L188L 0.31 TCGA-EE-A29B-06 9 127996026 127996026 C T RABEPK Missense_Mutation p.H296Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 9 129642869 129642869 C T ZBTB34 Silent p.L393L 0.34 TCGA-EE-A29B-06 9 133755498 133755498 C T ABL1 Silent p.I508I 0.42 TCGA-EE-A29B-06 9 136597651 136597651 C T SARDH Missense_Mutation p.R135Q 0.39 tolerated(0.34) benign(0.009) TCGA-EE-A29B-06 9 137657545 137657545 G A COL5A1 Missense_Mutation p.G685R 0.40 probably_damaging(0.997) TCGA-EE-A29B-06 9 138586187 138586187 G A SOHLH1 Intron 0.38 TCGA-EE-A29B-06 9 139391864 139391864 G A NOTCH1 Silent p.I2109I 0.39 TCGA-EE-A29B-06 9 139749712 139749712 C T MAMDC4 Silent p.L402L 0.39 TCGA-EE-A29B-06 9 27949363 27949363 C T LINGO2 Missense_Mutation p.G436E 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 9 77286797 77286797 G A RORB Missense_Mutation p.D402N 0.44 tolerated(0.41) benign(0.005) TCGA-EE-A29B-06 9 84532747 84532747 C T SPATA31D5P RNA 0.33 TCGA-EE-A29B-06 9 85964641 85964641 C T FRMD3 Silent p.V109V 0.35 TCGA-EE-A29B-06 9 86554526 86554526 T C C9orf64 Missense_Mutation p.N309S 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A29B-06 9 96435917 96435917 C T PHF2 Missense_Mutation p.S800F 0.49 deleterious(0.02) unknown(0) TCGA-EE-A29B-06 9 98209210 98209210 C A PTCH1 Missense_Mutation p.G1443V 0.47 deleterious_low_confidence(0.03) benign(0.04) TCGA-EE-A29B-06 X 101097735 101097735 C T NXF5 Missense_Mutation p.M10I 0.95 tolerated(0.39) benign(0.001) TCGA-EE-A29B-06 X 106108821 106108821 C T TBC1D8B Silent p.S795S 0.95 TCGA-EE-A29B-06 X 106171614 106171614 G A CLDN2 Missense_Mutation p.M52I 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 X 110366492 110366492 G A PAK3 Missense_Mutation p.G54E 0.97 deleterious(0.04) probably_damaging(1) TCGA-EE-A29B-06 X 117032927 117032927 G A KLHL13 Missense_Mutation p.P641S 0.92 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29B-06 X 123654524 123654524 C T TENM1 Silent p.T1048T 0.96 TCGA-EE-A29B-06 X 129804161 129804161 G A ENOX2 Missense_Mutation p.R187C 1.00 deleterious(0) probably_damaging(1) TCGA-EE-A29B-06 X 130412483 130412483 C T IGSF1 Missense_Mutation p.E670K 0.95 tolerated(0.11) benign(0.113) TCGA-EE-A29B-06 X 35993925 35993925 C T CXorf22 Missense_Mutation p.R870W 0.98 tolerated(0.05) benign(0.07) TCGA-EE-A29B-06 X 48763720 48763720 C T SLC35A2 Silent p.Q125Q 1.00 TCGA-EE-A29B-06 X 50119860 50119860 G A DGKK RNA 1.00 TCGA-EE-A29B-06 X 591565 591565 C T SHOX 5'UTR 0.98 TCGA-EE-A29B-06 X 65476088 65476088 G A HEPH Missense_Mutation p.E992K 1.00 deleterious(0.02) possibly_damaging(0.78) TCGA-EE-A29B-06 X 65486289 65486289 C T HEPH Silent p.P1138P 0.93 TCGA-EE-A29B-06 X 70321291 70321291 C T FOXO4 Missense_Mutation p.S404F 0.93 deleterious(0.05) probably_damaging(0.959) TCGA-EE-A29B-06 X 78216809 78216809 T A P2RY10 Silent p.I264I 0.98 TCGA-EE-A29B-06 X 79978134 79978134 G A BRWD3 Silent p.F601F 0.91 TCGA-EE-A29B-06 X 83126562 83126562 C T CYLC1 Missense_Mutation p.S54L 0.74 tolerated(1) benign(0.014) TCGA-EE-A29B-06 X 91132335 91132335 G A PCDH11X Missense_Mutation p.D366N 1.00 deleterious(0.01) benign(0.139) TCGA-EE-A29C-06 10 101439504 101439504 T C ENTPD7 Silent p.T140T 0.27 TCGA-EE-A29C-06 10 103599527 103599527 G A KCNIP2 Intron 0.31 TCGA-EE-A29C-06 10 104162160 104162160 C T NFKB2 3'UTR 0.40 TCGA-EE-A29C-06 10 104174684 104174684 C T PSD Missense_Mutation p.D354N 0.36 tolerated(0.53) benign(0) TCGA-EE-A29C-06 10 104231132 104231132 C T TMEM180 Silent p.F269F 0.28 TCGA-EE-A29C-06 10 114136158 114136158 G A ACSL5 Missense_Mutation p.G31R 0.28 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A29C-06 10 12162807 12162807 C T DHTKD1 Missense_Mutation p.P894S 0.22 tolerated(0.67) benign(0.005) TCGA-EE-A29C-06 10 12162808 12162808 C T DHTKD1 Missense_Mutation p.P894L 0.22 tolerated(0.28) benign(0.097) TCGA-EE-A29C-06 10 123274775 123274775 G A FGFR2 Silent p.Y382Y 0.33 TCGA-EE-A29C-06 10 124395546 124395546 C T DMBT1 Silent p.F2067F 0.25 TCGA-EE-A29C-06 10 134595410 134595410 C T INPP5A Missense_Mutation p.H402Y 0.27 tolerated(0.66) benign(0.403) TCGA-EE-A29C-06 10 135345634 135345634 C T CYP2E1 Missense_Mutation p.P165L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29C-06 10 22615839 22615839 C T BMI1 Missense_Mutation p.R45C 0.34 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A29C-06 10 28347518 28347518 C T MPP7 Missense_Mutation p.G438E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 10 31139069 31139069 C T ZNF438 Missense_Mutation p.E89K 0.44 tolerated(0.12) benign(0.196) TCGA-EE-A29C-06 10 50532253 50532253 G A C10orf71 Missense_Mutation p.E555K 0.28 tolerated(0.24) possibly_damaging(0.539) TCGA-EE-A29C-06 10 50740971 50740971 C T ERCC6-PGBD3 Missense_Mutation p.E14K 0.23 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EE-A29C-06 10 50856580 50856580 G A CHAT Missense_Mutation p.G437S 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 10 50856581 50856581 G A CHAT Missense_Mutation p.G437D 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 10 55780154 55780154 G T PCDH15 Missense_Mutation p.A850E 0.12 tolerated(0.09) possibly_damaging(0.78) TCGA-EE-A29C-06 10 55912989 55912989 G A PCDH15 Missense_Mutation p.A552V 0.30 deleterious(0.03) possibly_damaging(0.579) TCGA-EE-A29C-06 10 61830627 61830627 C T ANK3 Missense_Mutation p.E3338K 0.31 benign(0.014) TCGA-EE-A29C-06 10 69565494 69565494 C T DNAJC12 Missense_Mutation p.D117N 0.27 tolerated(0.26) benign(0.006) TCGA-EE-A29C-06 10 70227960 70227960 G A DNA2 Missense_Mutation p.P207S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 10 71690275 71690275 G A COL13A1 Silent p.G539G 0.27 TCGA-EE-A29C-06 10 72298062 72298062 C T PALD1 Silent p.F450F 0.20 TCGA-EE-A29C-06 10 78651306 78651306 C T KCNMA1 Missense_Mutation p.D1090N 0.37 tolerated(0.08) probably_damaging(0.973) TCGA-EE-A29C-06 10 83635601 83635601 C T NRG3 Missense_Mutation p.P169S 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A29C-06 10 93256117 93256117 T C HECTD2 Silent p.C556C 0.31 TCGA-EE-A29C-06 11 102819836 102819836 C T MMP13 Silent p.T323T 0.33 TCGA-EE-A29C-06 11 106810890 106810890 C T GUCY1A2 Missense_Mutation p.E168K 0.31 tolerated(0.63) benign(0.067) TCGA-EE-A29C-06 11 108409813 108409813 G A EXPH5 Silent p.S127S 0.46 TCGA-EE-A29C-06 11 113803741 113803741 G A HTR3B Missense_Mutation p.E208K 0.33 deleterious(0) possibly_damaging(0.874) TCGA-EE-A29C-06 11 117076804 117076804 C T PCSK7 Missense_Mutation p.G756E 0.18 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A29C-06 11 117076805 117076805 C T PCSK7 Missense_Mutation p.G756R 0.16 deleterious_low_confidence(0.01) benign(0.002) TCGA-EE-A29C-06 11 119061485 119061485 G A CCDC153 Silent p.D138D 0.53 TCGA-EE-A29C-06 11 120838011 120838011 G A GRIK4 Missense_Mutation p.E792K 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29C-06 11 122738147 122738147 G A CRTAM Missense_Mutation p.R283K 0.31 tolerated(0.74) benign(0.015) TCGA-EE-A29C-06 11 15098931 15098931 C T CALCB Silent p.F108F 0.30 TCGA-EE-A29C-06 11 16760205 16760205 G A C11orf58 5'UTR 0.62 TCGA-EE-A29C-06 11 2334923 2334923 G A TSPAN32 Missense_Mutation p.E132K 0.33 deleterious(0.01) possibly_damaging(0.751) TCGA-EE-A29C-06 11 24750779 24750779 C T LUZP2 Missense_Mutation p.R43C 0.39 deleterious(0) possibly_damaging(0.742) TCGA-EE-A29C-06 11 36614751 36614751 C T RAG2 Missense_Mutation p.G323E 0.42 tolerated(0.14) probably_damaging(1) TCGA-EE-A29C-06 11 43513659 43513659 C T TTC17 Silent p.I1080I 0.40 TCGA-EE-A29C-06 11 44931324 44931324 C T TSPAN18 Silent p.I44I 0.35 TCGA-EE-A29C-06 11 4608745 4608745 C T OR52I2 Missense_Mutation p.L235F 0.43 tolerated(0.32) benign(0.367) TCGA-EE-A29C-06 11 4608746 4608746 T A OR52I2 Missense_Mutation p.L235H 0.43 deleterious(0.02) possibly_damaging(0.823) TCGA-EE-A29C-06 11 46465037 46465037 C T AMBRA1 Splice_Site p.X788_splice 0.27 TCGA-EE-A29C-06 11 46465038 46465038 C T AMBRA1 Missense_Mutation p.A788T 0.27 deleterious(0.02) benign(0.237) TCGA-EE-A29C-06 11 47446034 47446034 G A PSMC3 Silent p.F133F 0.48 TCGA-EE-A29C-06 11 47498455 47498455 C T CELF1 Missense_Mutation p.G342R 0.34 tolerated(0.1) probably_damaging(0.979) TCGA-EE-A29C-06 11 5010899 5010899 C T MMP26 Silent p.L41L 0.48 TCGA-EE-A29C-06 11 5153503 5153503 G A OR52A5 Missense_Mutation p.R124C 0.30 deleterious(0.02) benign(0.165) TCGA-EE-A29C-06 11 5255394 5255394 C T HBD Missense_Mutation p.D48N 0.48 tolerated(1) benign(0.04) TCGA-EE-A29C-06 11 56230826 56230826 G A OR5M9 Missense_Mutation p.R18C 0.45 tolerated(0.07) benign(0.021) TCGA-EE-A29C-06 11 64673226 64673226 G A ATG2A Missense_Mutation p.S1120F 0.40 deleterious(0) benign(0.206) TCGA-EE-A29C-06 11 6654053 6654053 G A DCHS1 Missense_Mutation p.P897L 0.28 tolerated(0.29) benign(0.423) TCGA-EE-A29C-06 11 70332254 70332254 C T SHANK2 Missense_Mutation p.E1383K 0.45 deleterious(0.01) benign(0.006) TCGA-EE-A29C-06 11 72408489 72408489 A G ARAP1 Silent p.G944G 0.43 TCGA-EE-A29C-06 11 73759367 73759367 G A C2CD3 Missense_Mutation p.P1793L 0.50 deleterious(0) benign(0.197) TCGA-EE-A29C-06 11 7722018 7722018 A T OVCH2 Silent p.G242G 0.33 TCGA-EE-A29C-06 11 7960190 7960190 C T OR10A3 Missense_Mutation p.R293Q 0.44 deleterious(0) benign(0.087) TCGA-EE-A29C-06 11 89885592 89885592 G A NAALAD2 Missense_Mutation p.G246R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 11 92085397 92085397 G A FAT3 Missense_Mutation p.G40D 0.40 benign(0.36) TCGA-EE-A29C-06 12 108626526 108626526 G A WSCD2 Missense_Mutation p.R333K 0.26 deleterious(0.02) benign(0.219) TCGA-EE-A29C-06 12 108985508 108985508 C T TMEM119 Missense_Mutation p.E218K 0.24 tolerated(0.19) benign(0.307) TCGA-EE-A29C-06 12 110933831 110933831 C T VPS29 Missense_Mutation p.G65R 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A29C-06 12 111121067 111121067 G A HVCN1 Intron 0.21 TCGA-EE-A29C-06 12 114793507 114793507 G A TBX5 Missense_Mutation p.H463Y 0.53 deleterious_low_confidence(0) possibly_damaging(0.462) TCGA-EE-A29C-06 12 120652731 120652731 C T PXN Missense_Mutation p.G406E 0.25 deleterious(0) possibly_damaging(0.673) TCGA-EE-A29C-06 12 120942760 120942760 C A COQ5 Silent p.L236L 0.26 TCGA-EE-A29C-06 12 123477172 123477172 G A PITPNM2 Missense_Mutation p.H760Y 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A29C-06 12 124330546 124330546 G A DNAH10 Missense_Mutation p.E1769K 0.24 probably_damaging(0.995) TCGA-EE-A29C-06 12 1748983 1748983 G A WNT5B Silent p.R154R 0.29 TCGA-EE-A29C-06 12 29460611 29460611 T G FAR2 Missense_Mutation p.I189S 0.26 deleterious(0) possibly_damaging(0.85) TCGA-EE-A29C-06 12 42854405 42854405 C T PRICKLE1 Missense_Mutation p.E568K 0.34 tolerated(1) benign(0.219) TCGA-EE-A29C-06 12 49521861 49521861 C T TUBA1B Silent p.G412G 0.30 TCGA-EE-A29C-06 12 55795184 55795184 G A OR6C65 Missense_Mutation p.R291K 0.25 deleterious_low_confidence(0.02) benign(0.144) TCGA-EE-A29C-06 12 55863781 55863781 G A OR6C70 Silent p.L48L 0.28 TCGA-EE-A29C-06 12 56639219 56639219 G A ANKRD52 Silent p.P782P 0.45 TCGA-EE-A29C-06 12 57577163 57577163 C T LRP1 Silent p.G1888G 0.28 TCGA-EE-A29C-06 12 6103063 6103063 C T VWF Missense_Mutation p.G2188E 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A29C-06 12 6103064 6103064 C G VWF Missense_Mutation p.G2188R 0.15 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A29C-06 12 69109417 69109417 C T NUP107 Missense_Mutation p.A327V 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 12 91558410 91558410 C T DCN Missense_Mutation p.G99E 0.33 tolerated(0.2) possibly_damaging(0.477) TCGA-EE-A29C-06 12 93793086 93793086 C T NUDT4 Silent p.S159S 0.09 TCGA-EE-A29C-06 12 968444 968444 C T WNK1 Silent p.F478F 0.17 TCGA-EE-A29C-06 12 97136274 97136274 G A C12orf55 Missense_Mutation p.E2377K 0.28 tolerated(0.07) benign(0.003) TCGA-EE-A29C-06 12 99028092 99028092 G A IKBIP Silent p.I93I 0.23 TCGA-EE-A29C-06 13 101717760 101717760 G A NALCN Silent p.L1534L 0.24 TCGA-EE-A29C-06 13 101717761 101717761 G A NALCN Silent p.V1533V 0.24 TCGA-EE-A29C-06 13 32907279 32907279 C T BRCA2 Missense_Mutation p.P555L 0.42 tolerated(0.34) benign(0.004) TCGA-EE-A29C-06 13 32918773 32918773 C T BRCA2 Missense_Mutation p.S2307L 0.36 tolerated(0.08) benign(0.125) TCGA-EE-A29C-06 13 33091980 33091980 G A N4BP2L2 Intron 0.43 TCGA-EE-A29C-06 13 37006837 37006837 G A CCNA1 Missense_Mutation p.G27R 0.26 tolerated_low_confidence(0.21) benign(0) TCGA-EE-A29C-06 13 37006838 37006838 G A CCNA1 Missense_Mutation p.G27E 0.22 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A29C-06 13 39264487 39264487 G A FREM2 Silent p.E1002E 0.45 TCGA-EE-A29C-06 14 101405923 101405923 G A SNORD113-6 RNA 0.44 TCGA-EE-A29C-06 14 22315338 22315338 C T TRAV8-2 Silent p.S92S 0.43 TCGA-EE-A29C-06 14 22959513 22959513 G A TRAJ48 Silent p.G12G 0.39 TCGA-EE-A29C-06 14 24586912 24586912 C T DCAF11 Silent p.S149S 0.39 TCGA-EE-A29C-06 14 56104545 56104545 C T KTN1 Missense_Mutation p.H589Y 0.48 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A29C-06 14 61446561 61446561 G A TRMT5 Silent p.L19L 0.45 TCGA-EE-A29C-06 14 80328179 80328179 G A NRXN3 Missense_Mutation p.V1020M 0.33 deleterious(0) benign(0.033) TCGA-EE-A29C-06 14 88729741 88729741 C T KCNK10 Silent p.Q69Q 0.45 TCGA-EE-A29C-06 15 100943031 100943031 C T CERS3 Missense_Mutation p.E347K 0.24 tolerated(0.57) benign(0.002) TCGA-EE-A29C-06 15 101719038 101719038 G A CHSY1 Missense_Mutation p.R322C 0.40 tolerated(0.2) benign(0.082) TCGA-EE-A29C-06 15 22368563 22368563 G A OR4M2 5'UTR 0.10 TCGA-EE-A29C-06 15 24922173 24922173 G A NPAP1 Missense_Mutation p.E387K 0.16 tolerated(0.76) benign(0.047) TCGA-EE-A29C-06 15 24923207 24923207 G A NPAP1 Silent p.G731G 0.27 TCGA-EE-A29C-06 15 25417710 25417710 C T SNORD115-3 5'Flank 0.28 TCGA-EE-A29C-06 15 34102840 34102840 G A RYR3 Missense_Mutation p.R3396Q 0.35 possibly_damaging(0.684) TCGA-EE-A29C-06 15 34527391 34527391 C T SLC12A6 Missense_Mutation p.D1118N 0.25 deleterious(0.02) benign(0.109) TCGA-EE-A29C-06 15 42375956 42375956 C T PLA2G4D Missense_Mutation p.D165N 0.28 tolerated(0.05) benign(0.004) TCGA-EE-A29C-06 15 48782180 48782180 C T FBN1 Missense_Mutation p.V984I 0.29 benign(0.06) TCGA-EE-A29C-06 15 49611928 49611928 C G GALK2 Missense_Mutation p.N365K 0.14 deleterious(0.04) benign(0.221) TCGA-EE-A29C-06 15 55652855 55652855 C T CCPG1 Silent p.R372R 0.24 TCGA-EE-A29C-06 15 55790604 55790604 C T DYX1C1 5'UTR 0.30 TCGA-EE-A29C-06 15 55930812 55930812 C T PRTG Missense_Mutation p.R796Q 0.36 tolerated(0.71) probably_damaging(1) TCGA-EE-A29C-06 15 65158134 65158134 C T PLEKHO2 3'UTR 0.41 TCGA-EE-A29C-06 15 68631854 68631854 G A ITGA11 Silent p.N420N 0.31 TCGA-EE-A29C-06 15 92706125 92706125 C T SLCO3A1 Silent p.I631I 0.25 TCGA-EE-A29C-06 16 101619 101619 C T POLR3K Silent p.L46L 0.34 TCGA-EE-A29C-06 16 1537732 1537732 G A PTX4 Silent p.L122L 0.25 TCGA-EE-A29C-06 16 19451476 19451476 C T TMC5 Missense_Mutation p.P39L 0.29 tolerated_low_confidence(0.07) benign(0.004) TCGA-EE-A29C-06 16 20566652 20566652 T A ACSM2B Missense_Mutation p.I179F 0.34 tolerated(0.08) possibly_damaging(0.683) TCGA-EE-A29C-06 16 21048133 21048133 G A DNAH3 Missense_Mutation p.P1663L 0.40 deleterious(0.02) benign(0.323) TCGA-EE-A29C-06 16 2134315 2134315 C T TSC2 Silent p.S1364S 0.27 TCGA-EE-A29C-06 16 21858749 21858749 C T NPIPB4 Nonsense_Mutation p.W78* 0.20 TCGA-EE-A29C-06 16 23079464 23079464 G A USP31 Missense_Mutation p.P1321L 0.29 tolerated_low_confidence(0.16) possibly_damaging(0.451) TCGA-EE-A29C-06 16 23224037 23224037 G A SCNN1G Missense_Mutation p.E445K 0.18 tolerated(0.05) probably_damaging(0.979) TCGA-EE-A29C-06 16 23716268 23716268 G A ERN2 Nonsense_Mutation p.R312* 0.31 TCGA-EE-A29C-06 16 27856321 27856321 G A GSG1L Silent p.L204L 0.29 TCGA-EE-A29C-06 16 29998830 29998830 G A TAOK2 Silent p.R1079R 0.34 TCGA-EE-A29C-06 16 29998831 29998831 G A TAOK2 Missense_Mutation p.G1080S 0.33 deleterious_low_confidence(0.01) benign(0.125) TCGA-EE-A29C-06 16 30119700 30119700 G - GDPD3 Frame_Shift_Del p.S254* 0.28 TCGA-EE-A29C-06 16 31384650 31384650 G A ITGAX Missense_Mutation p.G816E 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29C-06 16 32265026 32265026 G A TP53TG3D Missense_Mutation p.G118R 0.18 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A29C-06 16 56397837 56397837 G A AMFR Missense_Mutation p.R594C 0.49 deleterious(0) probably_damaging(0.995) TCGA-EE-A29C-06 16 57485015 57485015 C T COQ9 Missense_Mutation p.S46F 0.44 tolerated(0.06) benign(0.14) TCGA-EE-A29C-06 16 57785893 57785893 T G KATNB1 Silent p.P186P 0.24 TCGA-EE-A29C-06 16 67233464 67233464 C T ELMO3 Silent p.P82P 0.28 TCGA-EE-A29C-06 16 68269602 68269602 C T ESRP2 Missense_Mutation p.E88K 0.21 tolerated(0.14) benign(0.239) TCGA-EE-A29C-06 16 70778390 70778390 G A VAC14 Silent p.L488L 0.31 TCGA-EE-A29C-06 16 71319448 71319448 G A CMTR2 Missense_Mutation p.P126S 0.29 tolerated(0.06) possibly_damaging(0.513) TCGA-EE-A29C-06 16 71710360 71710360 G A PHLPP2 Silent p.A487A 0.33 TCGA-EE-A29C-06 16 72991912 72991912 G A ZFHX3 Silent p.P711P 0.27 TCGA-EE-A29C-06 16 72991913 72991913 G A ZFHX3 Missense_Mutation p.P711L 0.28 probably_damaging(0.997) TCGA-EE-A29C-06 16 74716619 74716619 C T MLKL Missense_Mutation p.D296N 0.26 tolerated(0.1) benign(0.444) TCGA-EE-A29C-06 17 10366440 10366440 G A MYH4 Nonsense_Mutation p.Q291* 0.45 TCGA-EE-A29C-06 17 11648297 11648297 C T DNAH9 Missense_Mutation p.P2099S 0.16 probably_damaging(0.984) TCGA-EE-A29C-06 17 18046115 18046115 C T MYO15A Silent p.S1957S 0.31 TCGA-EE-A29C-06 17 20013850 20013850 G A SPECC1 Silent p.T86T 0.37 TCGA-EE-A29C-06 17 26089889 26089889 G A NOS2 Missense_Mutation p.S912F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 17 26108131 26108131 G A NOS2 Silent p.I265I 0.39 TCGA-EE-A29C-06 17 26822813 26822813 C T SLC13A2 Silent p.F532F 0.35 TCGA-EE-A29C-06 17 27802791 27802791 T C TAOK1 Splice_Site p.X102_splice 0.19 TCGA-EE-A29C-06 17 40951250 40951250 C T CNTD1 Silent p.I55I 0.24 TCGA-EE-A29C-06 17 42636670 42636670 G C FZD2 Missense_Mutation p.W538C 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 17 48272431 48272431 C G COL1A1 Missense_Mutation p.D444H 0.37 unknown(0) TCGA-EE-A29C-06 17 4836270 4836270 C T GP1BA Missense_Mutation p.S124F 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 17 48538069 48538069 C T ACSF2 Missense_Mutation p.P54S 0.23 deleterious(0.04) possibly_damaging(0.607) TCGA-EE-A29C-06 17 48755254 48755254 T C ABCC3 Silent p.T1176T 0.39 TCGA-EE-A29C-06 17 49825170 49825170 C T CA10 Silent p.G96G 0.29 TCGA-EE-A29C-06 17 5456793 5456793 T C NLRP1 Missense_Mutation p.D814G 0.37 deleterious(0) probably_damaging(0.99) TCGA-EE-A29C-06 17 55183373 55183373 C T AKAP1 Missense_Mutation p.P183L 0.32 tolerated(0.5) benign(0.001) TCGA-EE-A29C-06 17 59557575 59557575 G A TBX4 Missense_Mutation p.E306K 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A29C-06 17 61611504 61611504 C T KCNH6 Silent p.F311F 0.37 TCGA-EE-A29C-06 17 62856147 62856147 G A LRRC37A3 Silent p.L1373L 0.33 TCGA-EE-A29C-06 17 66039321 66039321 C T KPNA2 Missense_Mutation p.R258W 0.37 tolerated(0.19) benign(0.106) TCGA-EE-A29C-06 17 66928525 66928525 G A ABCA8 Missense_Mutation p.S234F 0.25 tolerated(0.06) probably_damaging(0.988) TCGA-EE-A29C-06 17 72522183 72522183 C T CD300LB Missense_Mutation p.R62K 0.27 tolerated(0.12) benign(0.007) TCGA-EE-A29C-06 17 72700740 72700740 T C CD300LF Missense_Mutation p.K87E 0.31 tolerated(0.15) benign(0.054) TCGA-EE-A29C-06 17 7292014 7292014 G A TNK1 Silent p.K594K 0.33 TCGA-EE-A29C-06 17 73214302 73214302 C T NUP85 Silent p.L166L 0.41 TCGA-EE-A29C-06 17 73569281 73569281 C T LLGL2 Missense_Mutation p.P883S 0.19 tolerated(0.15) benign(0.15) TCGA-EE-A29C-06 17 73627090 73627090 C T RECQL5 Missense_Mutation p.G517S 0.27 tolerated(0.12) benign(0.031) TCGA-EE-A29C-06 17 73739906 73739906 C T ITGB4 Silent p.S1025S 0.29 TCGA-EE-A29C-06 17 76083169 76083169 C T TNRC6C Missense_Mutation p.P1263L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 17 76492083 76492083 T A DNAH17 Missense_Mutation p.K1912M 0.28 probably_damaging(0.977) TCGA-EE-A29C-06 17 78188523 78188523 G A SGSH Missense_Mutation p.P133S 0.47 tolerated(0.09) benign(0.395) TCGA-EE-A29C-06 17 8784242 8784242 C T PIK3R5 Silent p.K825K 0.30 TCGA-EE-A29C-06 18 21404449 21404449 C T LAMA3 Missense_Mutation p.P831S 0.25 probably_damaging(0.963) TCGA-EE-A29C-06 18 28934899 28934899 C T DSG1 Missense_Mutation p.P914S 0.33 tolerated(0.55) benign(0.335) TCGA-EE-A29C-06 18 44424036 44424036 C T PIAS2 Missense_Mutation p.R341Q 0.20 deleterious(0) benign(0.002) TCGA-EE-A29C-06 18 67692000 67692000 A G RTTN Missense_Mutation p.S1970P 0.31 deleterious(0.01) benign(0.059) TCGA-EE-A29C-06 18 7231816 7231816 C T LRRC30 Missense_Mutation p.S227L 0.32 deleterious(0.03) possibly_damaging(0.676) TCGA-EE-A29C-06 19 10444290 10444290 C T RAVER1 5'UTR 0.27 TCGA-EE-A29C-06 19 1054604 1054604 C T ABCA7 Silent p.L1254L 0.52 TCGA-EE-A29C-06 19 10736962 10736962 G A SLC44A2 Missense_Mutation p.G24E 0.23 deleterious(0) possibly_damaging(0.732) TCGA-EE-A29C-06 19 1218459 1218459 C T STK11 Nonsense_Mutation p.Q112* 0.41 TCGA-EE-A29C-06 19 15281344 15281344 C T NOTCH3 Missense_Mutation p.E1638K 0.19 tolerated(0.8) benign(0.212) TCGA-EE-A29C-06 19 15538239 15538239 A T WIZ Missense_Mutation p.M212K 0.33 deleterious(0) probably_damaging(0.986) TCGA-EE-A29C-06 19 15763658 15763658 C T CYP4F3 Silent p.L337L 0.26 TCGA-EE-A29C-06 19 15770196 15770196 G A CYP4F3 3'UTR 0.14 TCGA-EE-A29C-06 19 16060411 16060411 C T OR10H4 Silent p.I198I 0.37 TCGA-EE-A29C-06 19 16338374 16338374 C T AP1M1 Missense_Mutation p.S242F 0.29 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A29C-06 19 17628557 17628557 G A PGLS Silent p.P179P 0.26 TCGA-EE-A29C-06 19 19016389 19016389 C T COPE Missense_Mutation p.A165T 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A29C-06 19 19656266 19656266 G A CILP2 Missense_Mutation p.G971E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 19 19767573 19767573 G A ATP13A1 Missense_Mutation p.R327C 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A29C-06 19 22363330 22363330 C T ZNF676 Missense_Mutation p.E397K 0.23 deleterious(0.03) possibly_damaging(0.88) TCGA-EE-A29C-06 19 22941691 22941691 G A ZNF99 Silent p.P340P 0.22 TCGA-EE-A29C-06 19 36106232 36106232 C T HAUS5 Silent p.L143L 0.35 TCGA-EE-A29C-06 19 36124003 36124003 C T RBM42 Missense_Mutation p.A178V 0.22 deleterious(0.01) possibly_damaging(0.625) TCGA-EE-A29C-06 19 36124004 36124004 C T RBM42 Silent p.A178A 0.22 TCGA-EE-A29C-06 19 36168952 36168952 C T UPK1A 3'UTR 0.45 TCGA-EE-A29C-06 19 36223175 36223175 C T KMT2B Missense_Mutation p.P1909S 0.33 benign(0.16) TCGA-EE-A29C-06 19 38976703 38976703 C T RYR1 Missense_Mutation p.P1803L 0.28 probably_damaging(0.953) TCGA-EE-A29C-06 19 39408363 39408363 C T SARS2 Splice_Site p.X389_splice 0.23 TCGA-EE-A29C-06 19 40542123 40542123 G A ZNF780B Missense_Mutation p.H215Y 0.22 deleterious(0.02) possibly_damaging(0.684) TCGA-EE-A29C-06 19 40710533 40710533 C T MAP3K10 Silent p.L335L 0.29 TCGA-EE-A29C-06 19 41096183 41096183 C T SHKBP1 Silent p.P541P 0.19 TCGA-EE-A29C-06 19 42219622 42219622 G A CEACAM5 Missense_Mutation p.E253K 0.28 tolerated(0.44) unknown(0) TCGA-EE-A29C-06 19 46307590 46307590 C T RSPH6A Missense_Mutation p.D525N 0.37 tolerated(0.06) benign(0.182) TCGA-EE-A29C-06 19 49000828 49000828 C T LMTK3 Silent p.P1195P 0.19 TCGA-EE-A29C-06 19 49846519 49846519 G A TEAD2 Missense_Mutation p.S353F 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A29C-06 19 49933840 49933840 G A SLC17A7 Missense_Mutation p.S540F 0.27 deleterious(0) possibly_damaging(0.641) TCGA-EE-A29C-06 19 51767198 51767198 C T SIGLECL1 5'UTR 0.29 TCGA-EE-A29C-06 19 52147156 52147156 G A SIGLEC14 Silent p.S296S 0.28 TCGA-EE-A29C-06 19 52877582 52877582 C T ZNF880 Missense_Mutation p.S57F 0.35 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A29C-06 19 55239135 55239135 G A KIR3DL3 Silent p.E138E 0.65 TCGA-EE-A29C-06 19 56424075 56424075 C T NLRP13 Missense_Mutation p.D370N 0.23 tolerated(0.58) benign(0.012) TCGA-EE-A29C-06 19 57956710 57956710 G A ZNF749 Missense_Mutation p.D732N 0.29 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A29C-06 19 58101701 58101701 G A ZIK1 Silent p.K174K 0.25 TCGA-EE-A29C-06 19 59059687 59059687 C T TRIM28 Silent p.L376L 0.24 TCGA-EE-A29C-06 19 6755166 6755166 G A SH2D3A Silent p.F219F 0.28 TCGA-EE-A29C-06 19 8176006 8176006 G A FBN3 Silent p.P1382P 0.29 TCGA-EE-A29C-06 19 9049101 9049101 G A MUC16 Missense_Mutation p.H10844Y 0.33 benign(0) TCGA-EE-A29C-06 19 9061597 9061597 G A MUC16 Missense_Mutation p.P8617S 0.25 unknown(0) TCGA-EE-A29C-06 19 9085375 9085375 G A MUC16 Missense_Mutation p.P2147L 0.39 unknown(0) TCGA-EE-A29C-06 19 9089206 9089206 G A MUC16 Missense_Mutation p.S870L 0.25 unknown(0) TCGA-EE-A29C-06 19 9204508 9204508 G A OR1M1 Silent p.R196R 0.33 TCGA-EE-A29C-06 1 103356019 103356019 G A COL11A1 Silent p.S1448S 0.31 TCGA-EE-A29C-06 1 10364548 10364548 A G KIF1B Intron 0.64 TCGA-EE-A29C-06 1 109270661 109270661 C T FNDC7 Missense_Mutation p.S448L 0.42 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A29C-06 1 112524279 112524279 G A KCND3 Missense_Mutation p.S357L 0.49 deleterious(0) benign(0.223) TCGA-EE-A29C-06 1 115137132 115137132 C T DENND2C Missense_Mutation p.R798Q 0.33 deleterious(0) possibly_damaging(0.784) TCGA-EE-A29C-06 1 117564359 117564359 C T CD101 Silent p.L728L 0.43 TCGA-EE-A29C-06 1 12326959 12326959 C T VPS13D Missense_Mutation p.S539F 0.57 probably_damaging(0.983) TCGA-EE-A29C-06 1 144879284 144879284 G A PDE4DIP Missense_Mutation p.S1389L 0.11 deleterious(0) possibly_damaging(0.778) TCGA-EE-A29C-06 1 145580316 145580316 C T PIAS3 Silent p.F266F 0.24 TCGA-EE-A29C-06 1 150483882 150483882 G A ECM1 Intron 0.26 TCGA-EE-A29C-06 1 151773710 151773710 C T LINGO4 Missense_Mutation p.G491R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 1 152759990 152759990 G A LCE1E Missense_Mutation p.G72E 0.31 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A29C-06 1 154961377 154961377 C T FLAD1 Intron 0.43 TCGA-EE-A29C-06 1 154961378 154961378 C T FLAD1 Intron 0.41 TCGA-EE-A29C-06 1 155984846 155984846 G A SSR2 Missense_Mutation p.S90F 0.39 deleterious(0) probably_damaging(0.915) TCGA-EE-A29C-06 1 156146619 156146619 C T SEMA4A Missense_Mutation p.P706L 0.31 tolerated(0.65) benign(0.11) TCGA-EE-A29C-06 1 157771850 157771850 G A FCRL1 Silent p.I247I 0.27 TCGA-EE-A29C-06 1 158436236 158436236 G A OR10K1 Silent p.K295K 0.26 TCGA-EE-A29C-06 1 159683929 159683929 C T CRP Splice_Site p.X21_splice 0.34 TCGA-EE-A29C-06 1 161761327 161761327 G A ATF6 Missense_Mutation p.E162K 0.21 tolerated(0.73) benign(0.003) TCGA-EE-A29C-06 1 162325096 162325096 G A NOS1AP Missense_Mutation p.D239N 0.24 deleterious(0.05) benign(0.342) TCGA-EE-A29C-06 1 16390059 16390059 G A FAM131C Missense_Mutation p.S32L 0.24 tolerated(0.23) benign(0.006) TCGA-EE-A29C-06 1 171173094 171173094 C T FMO2 Missense_Mutation p.R240C 0.33 tolerated(0.18) possibly_damaging(0.564) TCGA-EE-A29C-06 1 17420166 17420166 C T PADI2 Nonsense_Mutation p.W142* 0.28 TCGA-EE-A29C-06 1 176811614 176811614 C T PAPPA2 3'UTR 0.26 TCGA-EE-A29C-06 1 181702639 181702639 C T CACNA1E Silent p.P1005P 0.25 TCGA-EE-A29C-06 1 181714493 181714493 G A CACNA1E Intron 0.16 TCGA-EE-A29C-06 1 197112160 197112160 G A ASPM Nonsense_Mutation p.Q408* 0.30 TCGA-EE-A29C-06 1 205553164 205553164 C T MFSD4 Silent p.L258L 0.34 TCGA-EE-A29C-06 1 205696889 205696889 G A NUCKS1 Nonsense_Mutation p.R38* 0.19 TCGA-EE-A29C-06 1 205801883 205801883 G A PM20D1 Silent p.L376L 0.28 TCGA-EE-A29C-06 1 210016907 210016907 C T DIEXF Silent p.F631F 0.21 TCGA-EE-A29C-06 1 2116332 2116332 C T C1orf86 3'Flank 0.79 TCGA-EE-A29C-06 1 216497652 216497652 C T USH2A Missense_Mutation p.E396K 0.22 benign(0.065) TCGA-EE-A29C-06 1 228879439 228879439 G A RHOU Missense_Mutation p.M243I 0.29 tolerated(0.29) benign(0.002) TCGA-EE-A29C-06 1 229676463 229676463 G A ABCB10 Nonsense_Mutation p.R365* 0.37 TCGA-EE-A29C-06 1 233807105 233807105 C T KCNK1 Silent p.F280F 0.25 TCGA-EE-A29C-06 1 236734652 236734652 G A HEATR1 Missense_Mutation p.P1316L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 1 24424459 24424459 C T MYOM3 Silent p.K233K 0.32 TCGA-EE-A29C-06 1 247201207 247201207 A G ZNF670 Silent p.S238S 0.25 TCGA-EE-A29C-06 1 249119065 249119065 C T SH3BP5L Missense_Mutation p.E24K 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.899) TCGA-EE-A29C-06 1 249142580 249142580 C T ZNF672 Silent p.C369C 0.12 TCGA-EE-A29C-06 1 26691525 26691525 G A ZNF683 Missense_Mutation p.A171V 0.48 tolerated(0.07) benign(0.394) TCGA-EE-A29C-06 1 26691531 26691531 G A ZNF683 Missense_Mutation p.P169L 0.21 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29C-06 1 27239984 27239984 G A NR0B2 Nonsense_Mutation p.Q150* 0.71 TCGA-EE-A29C-06 1 27587539 27587539 A G WDTC1 5'UTR 0.22 TCGA-EE-A29C-06 1 34174706 34174706 C T CSMD2 Missense_Mutation p.E1147K 0.35 tolerated(0.08) benign(0.407) TCGA-EE-A29C-06 1 35227278 35227278 G A GJB4 Silent p.V141V 0.22 TCGA-EE-A29C-06 1 38155520 38155520 C T C1orf109 Silent p.Q11Q 0.11 TCGA-EE-A29C-06 1 44086843 44086843 C T PTPRF Silent p.V1865V 0.35 TCGA-EE-A29C-06 1 47395968 47395968 T A CYP4A11 Missense_Mutation p.K460I 0.26 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29C-06 1 52800411 52800411 G A ZFYVE9 Missense_Mutation p.G1214E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 1 57185864 57185864 G A C1orf168 Missense_Mutation p.R705C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 1 57417821 57417821 G A C8B Missense_Mutation p.P189L 0.29 tolerated(1) benign(0.045) TCGA-EE-A29C-06 1 59041810 59041810 G A TACSTD2 3'UTR 0.78 TCGA-EE-A29C-06 1 67263797 67263797 G A INSL5 Missense_Mutation p.L103F 0.53 tolerated(0.15) benign(0.054) TCGA-EE-A29C-06 1 75038358 75038358 G A C1orf173 Silent p.S1012S 0.45 TCGA-EE-A29C-06 20 17640672 17640672 G A RRBP1 Nonsense_Mutation p.Q161* 0.45 TCGA-EE-A29C-06 20 19698203 19698203 C T SLC24A3 Missense_Mutation p.S584F 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A29C-06 20 20585929 20585929 A T RALGAPA2 Missense_Mutation p.I643N 0.24 deleterious(0.02) benign(0.131) TCGA-EE-A29C-06 20 2315889 2315889 C T TGM3 Silent p.I590I 0.27 TCGA-EE-A29C-06 20 34776268 34776268 G A EPB41L1 Splice_Site p.X292_splice 0.26 TCGA-EE-A29C-06 20 34782228 34782228 G C EPB41L1 Silent p.R465R 0.20 TCGA-EE-A29C-06 20 35269716 35269716 C T SLA2 Missense_Mutation p.R8K 0.30 tolerated(0.84) unknown(0) TCGA-EE-A29C-06 20 36874432 36874432 G A KIAA1755 Missense_Mutation p.R34C 0.39 deleterious(0) possibly_damaging(0.886) TCGA-EE-A29C-06 20 42694499 42694499 C T TOX2 Missense_Mutation p.P370S 0.23 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A29C-06 20 43058205 43058205 G A HNF4A Missense_Mutation p.G442E 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-EE-A29C-06 20 45239169 45239169 G A SLC13A3 Missense_Mutation p.P153S 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A29C-06 20 47585753 47585753 G C ARFGEF2 Missense_Mutation p.V377L 0.36 tolerated(0.1) possibly_damaging(0.812) TCGA-EE-A29C-06 21 10914408 10914408 C T TPTE Missense_Mutation p.M437I 0.07 tolerated(0.16) benign(0.18) TCGA-EE-A29C-06 21 11039421 11039421 C T BAGE2 RNA 0.05 TCGA-EE-A29C-06 21 15873018 15873018 C T SAMSN1 Missense_Mutation p.M268I 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29C-06 21 22804491 22804491 C T NCAM2 Missense_Mutation p.S515F 0.22 tolerated(0.05) benign(0.023) TCGA-EE-A29C-06 21 22838993 22838993 G A NCAM2 Missense_Mutation p.G574E 0.32 deleterious(0.04) probably_damaging(1) TCGA-EE-A29C-06 21 41301006 41301006 C T PCP4 Silent p.F53F 0.20 TCGA-EE-A29C-06 21 45655373 45655373 G A ICOSLG Missense_Mutation p.S160F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 21 45784067 45784067 C T TRPM2 Nonsense_Mutation p.Q109* 0.37 TCGA-EE-A29C-06 21 46047722 46047722 C T KRTAP10-9 Nonsense_Mutation p.Q212* 0.33 TCGA-EE-A29C-06 22 16287301 16287301 G A POTEH Silent p.I195I 0.41 TCGA-EE-A29C-06 22 31674412 31674412 G A LIMK2 3'Flank 0.38 TCGA-EE-A29C-06 22 38370097 38370097 G A SOX10 Missense_Mutation p.P269L 0.47 tolerated(0.28) possibly_damaging(0.879) TCGA-EE-A29C-06 22 38370098 38370098 G A SOX10 Missense_Mutation p.P269S 0.48 tolerated(0.11) possibly_damaging(0.815) TCGA-EE-A29C-06 22 39884916 39884916 C T MGAT3 Missense_Mutation p.P522S 0.42 tolerated_low_confidence(0.31) benign(0) TCGA-EE-A29C-06 22 39884917 39884917 C T MGAT3 Missense_Mutation p.P522L 0.42 tolerated_low_confidence(0.22) benign(0.005) TCGA-EE-A29C-06 22 40283767 40283767 C T ENTHD1 5'UTR 0.58 TCGA-EE-A29C-06 22 45255633 45255633 C T PRR5-ARHGAP8 Silent p.V510V 0.51 TCGA-EE-A29C-06 22 51041860 51041860 C T MAPK8IP2 Missense_Mutation p.S127F 0.64 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29C-06 2 108489117 108489117 G A RGPD4 Missense_Mutation p.E1553K 0.20 tolerated(0.1) probably_damaging(0.913) TCGA-EE-A29C-06 2 130832617 130832617 G A POTEF Silent p.L810L 0.29 TCGA-EE-A29C-06 2 141460005 141460005 G A LRP1B Silent p.I2047I 0.25 TCGA-EE-A29C-06 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.17 TCGA-EE-A29C-06 2 142567968 142567968 G A LRP1B Nonsense_Mutation p.Q29* 0.44 TCGA-EE-A29C-06 2 1437227 1437227 G A TPO Missense_Mutation p.G66E 0.33 tolerated(1) benign(0.001) TCGA-EE-A29C-06 2 153481964 153481964 A G FMNL2 Missense_Mutation p.K617R 0.32 possibly_damaging(0.486) TCGA-EE-A29C-06 2 160843733 160843733 C T PLA2R1 Silent p.E657E 0.39 TCGA-EE-A29C-06 2 172928456 172928456 C T METAP1D Silent p.D72D 0.33 TCGA-EE-A29C-06 2 179404146 179404146 C T TTN Silent p.L32882L 0.45 TCGA-EE-A29C-06 2 179568878 179568878 G A TTN Silent p.I10073I 0.09 TCGA-EE-A29C-06 2 179568880 179568880 T A TTN Missense_Mutation p.I10073F 0.09 TCGA-EE-A29C-06 2 191235953 191235953 C T INPP1 Missense_Mutation p.P342L 0.05 tolerated(0.22) benign(0.016) TCGA-EE-A29C-06 2 198948543 198948543 C T PLCL1 Missense_Mutation p.S101L 0.40 deleterious(0) benign(0.404) TCGA-EE-A29C-06 2 201888751 201888751 C T FAM126B 5'UTR 0.37 TCGA-EE-A29C-06 2 206869273 206869273 G A INO80D Missense_Mutation p.P968L 0.48 tolerated_low_confidence(0.07) benign(0.013) TCGA-EE-A29C-06 2 207482325 207482325 G A ADAM23 Missense_Mutation p.D825N 0.40 tolerated(0.23) probably_damaging(0.996) TCGA-EE-A29C-06 2 207558009 207558009 G A DYTN Silent p.T290T 0.10 TCGA-EE-A29C-06 2 207558010 207558010 G A DYTN Missense_Mutation p.T290I 0.10 deleterious(0) benign(0.408) TCGA-EE-A29C-06 2 20838187 20838187 G A HS1BP3 Intron 0.32 TCGA-EE-A29C-06 2 21224554 21224554 G A APOB 3'UTR 0.26 TCGA-EE-A29C-06 2 21229486 21229486 C T APOB Silent p.T3418T 0.30 TCGA-EE-A29C-06 2 217123897 217123897 T C MARCH4 3'UTR 0.33 TCGA-EE-A29C-06 2 223161825 223161825 G A PAX3 Missense_Mutation p.H65Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A29C-06 2 223161826 223161826 G A PAX3 Silent p.H64H 0.25 TCGA-EE-A29C-06 2 230911305 230911305 C T SLC16A14 Silent p.L179L 0.45 TCGA-EE-A29C-06 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.18 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A29C-06 2 42720488 42720488 C T KCNG3 Missense_Mutation p.D52N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 2 48809496 48809496 C T STON1-GTF2A1L Missense_Mutation p.P575L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 2 50280446 50280446 C T NRXN1 Missense_Mutation p.R1404K 0.29 tolerated(0.06) benign(0.098) TCGA-EE-A29C-06 2 7027287 7027287 C T RSAD2 Missense_Mutation p.R244C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 2 71742867 71742867 C T DYSF Missense_Mutation p.P292S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 2 74327599 74327599 C T TET3 Silent p.S1093S 0.58 TCGA-EE-A29C-06 2 98373814 98373814 G A TMEM131 Silent p.S1800S 0.19 TCGA-EE-A29C-06 3 100527029 100527029 G A ABI3BP Missense_Mutation p.P550S 0.29 tolerated(0.1) possibly_damaging(0.61) TCGA-EE-A29C-06 3 111603144 111603144 C T PHLDB2 Missense_Mutation p.P74S 0.30 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-EE-A29C-06 3 121305189 121305189 C T ARGFX Silent p.I230I 0.26 TCGA-EE-A29C-06 3 124196142 124196142 C T KALRN Silent p.S1382S 0.24 TCGA-EE-A29C-06 3 128199922 128199922 G A GATA2 Silent p.P461P 0.29 TCGA-EE-A29C-06 3 138417774 138417774 C T PIK3CB Nonsense_Mutation p.W582* 0.26 TCGA-EE-A29C-06 3 138739226 138739226 C T PRR23B Missense_Mutation p.G93D 0.27 tolerated(0.15) benign(0.015) TCGA-EE-A29C-06 3 138739227 138739227 C T PRR23B Missense_Mutation p.G93S 0.25 deleterious(0.04) benign(0.355) TCGA-EE-A29C-06 3 139279987 139279987 G A NMNAT3 Silent p.A171A 0.30 TCGA-EE-A29C-06 3 139297868 139297868 A C NMNAT3 Missense_Mutation p.S10A 0.35 deleterious(0) probably_damaging(0.966) TCGA-EE-A29C-06 3 141164718 141164718 A T ZBTB38 Missense_Mutation p.H1163L 0.29 tolerated_low_confidence(0.14) benign(0.03) TCGA-EE-A29C-06 3 151148112 151148112 C T MED12L Missense_Mutation p.T2110I 0.22 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29C-06 3 155200622 155200622 T C PLCH1 Missense_Mutation p.N1073D 0.24 tolerated_low_confidence(1) benign(0) TCGA-EE-A29C-06 3 15915345 15915345 C T MIR563 RNA 0.16 TCGA-EE-A29C-06 3 160967344 160967344 G A NMD3 Missense_Mutation p.E436K 0.19 tolerated(0.11) benign(0.175) TCGA-EE-A29C-06 3 164709234 164709234 T A SI Missense_Mutation p.Q1672L 0.23 tolerated(0.72) benign(0.027) TCGA-EE-A29C-06 3 167184856 167184856 T C SERPINI2 Silent p.E155E 0.16 TCGA-EE-A29C-06 3 169664560 169664560 G A RP11-379K17.4 RNA 0.41 TCGA-EE-A29C-06 3 17053049 17053049 C T PLCL2 Silent p.V611V 0.25 TCGA-EE-A29C-06 3 170715716 170715716 G A SLC2A2 Silent p.F517F 0.19 TCGA-EE-A29C-06 3 184542424 184542424 G A VPS8 Missense_Mutation p.E2K 0.18 tolerated_low_confidence(0.07) benign(0.037) TCGA-EE-A29C-06 3 184910290 184910290 G A EHHADH Silent p.F632F 0.33 TCGA-EE-A29C-06 3 186570840 186570840 G A ADIPOQ 5'UTR 0.36 TCGA-EE-A29C-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.31 deleterious(0) probably_damaging(0.992) TCGA-EE-A29C-06 3 195516830 195516830 C T MUC4 Missense_Mutation p.E541K 0.30 unknown(0) TCGA-EE-A29C-06 3 196281221 196281221 C T WDR53 Missense_Mutation p.G313D 0.29 tolerated(0.3) benign(0.021) TCGA-EE-A29C-06 3 25805745 25805745 G A NGLY1 Missense_Mutation p.R102C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 3 27183064 27183064 C T NEK10 Missense_Mutation p.G1017E 0.40 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A29C-06 3 32995307 32995307 G A CCR4 Missense_Mutation p.M131I 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 3 38888816 38888816 G A SCN11A Missense_Mutation p.S1582F 0.17 tolerated(0.55) benign(0.155) TCGA-EE-A29C-06 3 42906333 42906333 G A ACKR2 Silent p.G113G 0.26 TCGA-EE-A29C-06 3 46716164 46716164 G A ALS2CL Missense_Mutation p.T774M 0.26 tolerated(0.59) benign(0.153) TCGA-EE-A29C-06 3 48658389 48658389 G A TMEM89 Silent p.L122L 0.34 TCGA-EE-A29C-06 3 49002404 49002404 C T ARIH2 Missense_Mutation p.P126S 0.16 tolerated(0.38) benign(0) TCGA-EE-A29C-06 3 50326110 50326110 G A IFRD2 Silent p.F416F 0.39 TCGA-EE-A29C-06 3 77656973 77656973 A T ROBO2 Missense_Mutation p.K1070I 0.22 tolerated(0.24) possibly_damaging(0.703) TCGA-EE-A29C-06 3 97251218 97251218 C T EPHA6 Silent p.V739V 0.25 TCGA-EE-A29C-06 3 97887904 97887904 G A OR5H15 Missense_Mutation p.D121N 0.25 deleterious(0) probably_damaging(0.93) TCGA-EE-A29C-06 3 98110431 98110431 T A OR5K3 Missense_Mutation p.F308I 0.35 tolerated_low_confidence(0.41) benign(0) TCGA-EE-A29C-06 4 106158380 106158380 A T TET2 Missense_Mutation p.K1094I 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A29C-06 4 106859538 106859538 C T NPNT Missense_Mutation p.P186S 0.49 tolerated(0.09) benign(0.168) TCGA-EE-A29C-06 4 165962658 165962658 C T TRIM60 3'UTR 0.47 TCGA-EE-A29C-06 4 36122870 36122870 C T ARAP2 Silent p.T1275T 0.19 TCGA-EE-A29C-06 4 37962316 37962316 C T PTTG2 Silent p.S87S 0.32 TCGA-EE-A29C-06 4 40245489 40245489 G A RHOH Silent p.Q161Q 0.48 TCGA-EE-A29C-06 4 40245490 40245490 G A RHOH Missense_Mutation p.V162M 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 4 53340 53340 G C ZNF595 5'UTR 0.04 TCGA-EE-A29C-06 4 53380 53380 G C ZNF595 5'UTR 0.03 TCGA-EE-A29C-06 4 57389959 57389959 C T ARL9 Silent p.L97L 0.42 TCGA-EE-A29C-06 4 6081910 6081910 C T JAKMIP1 Missense_Mutation p.D411N 0.50 deleterious(0.04) possibly_damaging(0.589) TCGA-EE-A29C-06 4 6087146 6087146 C T JAKMIP1 Splice_Site p.X278_splice 0.42 TCGA-EE-A29C-06 4 6087147 6087147 C T JAKMIP1 Silent p.Q278Q 0.45 TCGA-EE-A29C-06 4 73923972 73923972 G A COX18 Silent p.F287F 0.32 TCGA-EE-A29C-06 4 77227925 77227925 G A FAM47E-STBD1 Translation_Start_Site p.M1? 0.53 deleterious(0) unknown(0) TCGA-EE-A29C-06 4 8418251 8418251 C G ACOX3 5'UTR 0.37 TCGA-EE-A29C-06 4 88767613 88767613 C T MEPE 3'UTR 0.35 TCGA-EE-A29C-06 5 102537323 102537323 G A PPIP5K2 Silent p.G1219G 0.40 TCGA-EE-A29C-06 5 125939782 125939782 G A PHAX Missense_Mutation p.R206K 0.50 deleterious(0.02) possibly_damaging(0.77) TCGA-EE-A29C-06 5 132101113 132101113 T G SEPT8 Missense_Mutation p.I47L 0.34 tolerated(0.2) possibly_damaging(0.631) TCGA-EE-A29C-06 5 13824396 13824396 G A DNAH5 Missense_Mutation p.T2164I 0.11 possibly_damaging(0.803) TCGA-EE-A29C-06 5 13920681 13920681 C T DNAH5 Missense_Mutation p.E236K 0.33 benign(0.292) TCGA-EE-A29C-06 5 139251407 139251407 G A NRG2 Silent p.S337S 0.30 TCGA-EE-A29C-06 5 140242121 140242121 C T AC005609.1 3'UTR 0.30 TCGA-EE-A29C-06 5 140502848 140502848 C A PCDHB4 Missense_Mutation p.T423N 0.10 deleterious(0.01) benign(0.363) TCGA-EE-A29C-06 5 140626671 140626671 G A PCDHB15 Missense_Mutation p.D509N 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.599) TCGA-EE-A29C-06 5 140725347 140725347 G A PCDHGA3 Missense_Mutation p.E583K 0.27 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-EE-A29C-06 5 140741427 140741427 C T PCDHGB2 Silent p.F575F 0.20 TCGA-EE-A29C-06 5 143853695 143853695 G A KCTD16 3'UTR 0.15 TCGA-EE-A29C-06 5 156590534 156590534 C T FAM71B Missense_Mutation p.A248T 0.12 tolerated(0.36) benign(0.001) TCGA-EE-A29C-06 5 160113203 160113203 G A ATP10B Missense_Mutation p.T118I 0.11 deleterious(0.01) possibly_damaging(0.544) TCGA-EE-A29C-06 5 16701681 16701681 G A MYO10 Silent p.F941F 0.30 TCGA-EE-A29C-06 5 167626002 167626002 C T TENM2 Silent p.S1015S 0.38 TCGA-EE-A29C-06 5 16764485 16764485 G A MYO10 Silent p.S400S 0.19 TCGA-EE-A29C-06 5 169474612 169474612 C T DOCK2 Silent p.F1355F 0.33 TCGA-EE-A29C-06 5 175110686 175110686 C T HRH2 Silent p.S150S 0.39 TCGA-EE-A29C-06 5 177569981 177569981 G A RMND5B Silent p.E138E 0.19 TCGA-EE-A29C-06 5 178554984 178554984 G A ADAMTS2 Missense_Mutation p.P865S 0.29 tolerated(0.39) benign(0.102) TCGA-EE-A29C-06 5 180335629 180335629 G A BTNL8 Silent p.L31L 0.08 TCGA-EE-A29C-06 5 24593395 24593395 C T CDH10 Missense_Mutation p.G69R 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 5 31316371 31316371 G A CDH6 Missense_Mutation p.D483N 0.32 deleterious(0) possibly_damaging(0.601) TCGA-EE-A29C-06 5 36265122 36265122 C T RANBP3L Missense_Mutation p.R165K 0.35 tolerated(0.38) benign(0.206) TCGA-EE-A29C-06 5 40958182 40958182 G A C7 Silent p.V436V 0.44 TCGA-EE-A29C-06 5 45262146 45262146 G A HCN1 Silent p.I850I 0.15 TCGA-EE-A29C-06 5 45645406 45645406 C T HCN1 Missense_Mutation p.D244N 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A29C-06 5 52360772 52360772 G A ITGA2 Missense_Mutation p.G545S 0.43 tolerated(0.15) benign(0.377) TCGA-EE-A29C-06 5 76129759 76129759 G A F2RL1 3'UTR 0.12 TCGA-EE-A29C-06 5 78964810 78964810 C T PAPD4 Silent p.D389D 0.37 TCGA-EE-A29C-06 5 78964811 78964811 C T PAPD4 Missense_Mutation p.L390F 0.37 deleterious(0.03) possibly_damaging(0.851) TCGA-EE-A29C-06 6 117686903 117686903 C T ROS1 Silent p.G938G 0.33 TCGA-EE-A29C-06 6 128222074 128222074 C T THEMIS Missense_Mutation p.A2T 0.42 deleterious(0.05) benign(0.22) TCGA-EE-A29C-06 6 132201098 132201098 C T ENPP1 Missense_Mutation p.S675F 0.34 tolerated(0.08) benign(0.002) TCGA-EE-A29C-06 6 150291158 150291158 C T ULBP1 Missense_Mutation p.P211L 0.33 tolerated(0.23) benign(0.077) TCGA-EE-A29C-06 6 16327062 16327062 C T ATXN1 Missense_Mutation p.V494I 0.30 deleterious(0.04) benign(0.338) TCGA-EE-A29C-06 6 26107905 26107905 C T HIST1H1T Silent p.R139R 0.23 TCGA-EE-A29C-06 6 26508969 26508969 G A BTN1A1 Missense_Mutation p.G383E 0.24 deleterious(0.03) probably_damaging(1) TCGA-EE-A29C-06 6 27798970 27798970 C T HIST1H4K 3'UTR 0.17 TCGA-EE-A29C-06 6 27798971 27798971 C T HIST1H4K 3'UTR 0.17 TCGA-EE-A29C-06 6 28542450 28542450 G A SCAND3 Missense_Mutation p.P678S 0.29 tolerated_low_confidence(0.1) benign(0.406) TCGA-EE-A29C-06 6 29394788 29394788 G A OR11A1 Missense_Mutation p.P211S 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 6 29795861 29795861 C T HLA-G Silent p.S37S 0.22 TCGA-EE-A29C-06 6 32008225 32008225 C T CYP21A2 Missense_Mutation p.P328S 0.19 tolerated(0.14) possibly_damaging(0.58) TCGA-EE-A29C-06 6 32008226 32008226 C T CYP21A2 Missense_Mutation p.P328L 0.19 deleterious(0) probably_damaging(0.938) TCGA-EE-A29C-06 6 33248673 33248675 CAT TA WDR46 Frame_Shift_Del p.H402Lfs*101 0.26 TCGA-EE-A29C-06 6 33694609 33694609 C T IP6K3 Missense_Mutation p.G163E 0.27 tolerated(0.06) benign(0.022) TCGA-EE-A29C-06 6 33744975 33744975 G A LEMD2 Missense_Mutation p.R400W 0.26 deleterious(0) probably_damaging(0.979) TCGA-EE-A29C-06 6 41555145 41555145 C T FOXP4 Missense_Mutation p.A256V 0.26 tolerated(0.07) benign(0.146) TCGA-EE-A29C-06 6 42690018 42690018 C T PRPH2 Missense_Mutation p.G19R 0.27 tolerated(0.07) probably_damaging(0.937) TCGA-EE-A29C-06 6 43167862 43167862 C T CUL9 Missense_Mutation p.L1118F 0.26 deleterious(0) probably_damaging(0.991) TCGA-EE-A29C-06 6 55263984 55263984 C T GFRAL Missense_Mutation p.P320L 0.11 tolerated(0.72) benign(0.006) TCGA-EE-A29C-06 6 55639005 55639005 C T BMP5 Missense_Mutation p.G290E 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A29C-06 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 6 56513381 56513381 G A DST Missense_Mutation p.P303L 0.44 probably_damaging(0.994) TCGA-EE-A29C-06 6 7403078 7403078 C T RIOK1 Missense_Mutation p.P239S 0.27 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A29C-06 6 7578716 7578716 G A DSP Missense_Mutation p.R1002Q 0.38 probably_damaging(0.977) TCGA-EE-A29C-06 6 75969155 75969155 G A TMEM30A Missense_Mutation p.A198V 0.27 tolerated(0.05) benign(0.002) TCGA-EE-A29C-06 6 76712660 76712660 C T IMPG1 Silent p.V422V 0.24 TCGA-EE-A29C-06 6 83850123 83850123 G A DOPEY1 Splice_Site p.X1805_splice 0.26 TCGA-EE-A29C-06 7 100696355 100696355 G A MUC17 Missense_Mutation p.G4398R 0.51 benign(0.184) TCGA-EE-A29C-06 7 100839468 100839468 C T MOGAT3 Missense_Mutation p.V291M 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29C-06 7 101877387 101877387 C T CUX1 Silent p.D1174D 0.46 TCGA-EE-A29C-06 7 117230474 117230474 G A CFTR Missense_Mutation p.E583K 0.17 tolerated(0.07) benign(0.297) TCGA-EE-A29C-06 7 117431982 117431982 G A CTTNBP2 Missense_Mutation p.P423L 0.24 tolerated(0.14) benign(0.027) TCGA-EE-A29C-06 7 1195178 1195178 G A ZFAND2A Missense_Mutation p.P65S 0.18 deleterious(0.04) benign(0.197) TCGA-EE-A29C-06 7 137282634 137282634 C T DGKI Missense_Mutation p.V424I 0.15 deleterious(0.01) possibly_damaging(0.478) TCGA-EE-A29C-06 7 137282635 137282635 T A DGKI Missense_Mutation p.K423N 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-EE-A29C-06 7 141730492 141730492 G A MGAM Missense_Mutation p.D469N 0.21 tolerated(0.12) benign(0.278) TCGA-EE-A29C-06 7 142481351 142481351 C T PRSS3P2 RNA 0.56 TCGA-EE-A29C-06 7 142510988 142510988 T A TRBV30 5'UTR 0.33 TCGA-EE-A29C-06 7 142640576 142640576 G A KEL Missense_Mutation p.P567L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 7 143036388 143036388 G A CLCN1 Missense_Mutation p.G482R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 7 143036389 143036389 G A CLCN1 Missense_Mutation p.G482E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 7 148768588 148768588 A T ZNF786 Missense_Mutation p.S426T 0.14 tolerated(0.2) possibly_damaging(0.601) TCGA-EE-A29C-06 7 149152452 149152452 G A ZNF777 Missense_Mutation p.A221V 0.53 tolerated(1) benign(0.087) TCGA-EE-A29C-06 7 149526051 149526051 G A SSPO RNA 0.45 TCGA-EE-A29C-06 7 150718391 150718391 G A ATG9B Missense_Mutation p.L283F 0.22 tolerated(1) benign(0.001) TCGA-EE-A29C-06 7 33185861 33185861 G A BBS9 5'UTR 0.22 TCGA-EE-A29C-06 7 40085609 40085609 T A CDK13 Missense_Mutation p.I843N 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 7 45007302 45007302 C T MYO1G Missense_Mutation p.G562R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29C-06 7 45725676 45725676 C T ADCY1 Missense_Mutation p.A730V 0.21 tolerated(0.88) benign(0.046) TCGA-EE-A29C-06 7 45743040 45743040 C T ADCY1 Silent p.L840L 0.20 TCGA-EE-A29C-06 7 48392067 48392067 C T ABCA13 Silent p.P3557P 0.19 TCGA-EE-A29C-06 7 50611656 50611656 G A DDC Missense_Mutation p.P43L 0.42 deleterious(0) probably_damaging(0.986) TCGA-EE-A29C-06 7 6731942 6731942 G A ZNF12 Missense_Mutation p.R211C 0.23 deleterious(0.01) benign(0.393) TCGA-EE-A29C-06 7 70880955 70880955 G A WBSCR17 Missense_Mutation p.E224K 0.21 tolerated(0.36) benign(0.361) TCGA-EE-A29C-06 7 77648629 77648629 G A MAGI2 3'UTR 0.40 TCGA-EE-A29C-06 7 81381466 81381466 C T HGF Missense_Mutation p.E199K 0.30 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A29C-06 7 83764220 83764220 T A SEMA3A Missense_Mutation p.S54C 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A29C-06 7 86469000 86469000 G A GRM3 Missense_Mutation p.E724K 0.47 tolerated(0.88) benign(0.217) TCGA-EE-A29C-06 7 87765295 87765295 G A ADAM22 Missense_Mutation p.G390D 0.21 deleterious(0.02) possibly_damaging(0.865) TCGA-EE-A29C-06 7 96746947 96746947 C T ACN9 5'UTR 0.28 TCGA-EE-A29C-06 7 97482507 97482507 G A ASNS Silent p.L447L 0.60 TCGA-EE-A29C-06 8 103311078 103311078 G A UBR5 Silent p.A1108A 0.26 TCGA-EE-A29C-06 8 103338881 103338881 G C UBR5 Missense_Mutation p.P498A 0.55 deleterious(0) probably_damaging(0.93) TCGA-EE-A29C-06 8 118170030 118170030 C T SLC30A8 Silent p.I173I 0.22 TCGA-EE-A29C-06 8 123963790 123963790 C T ZHX2 Missense_Mutation p.R14W 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 8 125498977 125498977 G A RNF139 Missense_Mutation p.V363I 0.23 tolerated(0.97) benign(0.013) TCGA-EE-A29C-06 8 125570059 125570059 C T MTSS1 Missense_Mutation p.G365S 0.12 tolerated(0.96) benign(0.033) TCGA-EE-A29C-06 8 133142162 133142162 C T KCNQ3 Missense_Mutation p.E656K 0.53 tolerated(0.15) benign(0.16) TCGA-EE-A29C-06 8 143996243 143996243 G A CYP11B2 Missense_Mutation p.A226V 0.19 deleterious(0) probably_damaging(0.984) TCGA-EE-A29C-06 8 144659263 144659263 G A NAPRT1 Missense_Mutation p.S218F 0.42 deleterious(0) probably_damaging(0.982) TCGA-EE-A29C-06 8 145151057 145151057 G A CYC1 Silent p.Q119Q 0.46 TCGA-EE-A29C-06 8 145151058 145151058 G A CYC1 Missense_Mutation p.V120M 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29C-06 8 20004874 20004874 C T SLC18A1 Silent p.K453K 0.45 TCGA-EE-A29C-06 8 26627945 26627945 C T ADRA1A Missense_Mutation p.M374I 0.39 tolerated_low_confidence(0.28) benign(0.003) TCGA-EE-A29C-06 8 32617780 32617780 C T NRG1 Missense_Mutation p.S380F 0.41 deleterious(0) probably_damaging(0.988) TCGA-EE-A29C-06 8 37727924 37727924 C T RAB11FIP1 Intron 0.25 TCGA-EE-A29C-06 8 39872789 39872789 G A IDO2 Missense_Mutation p.D311N 0.54 tolerated(0.2) benign(0.059) TCGA-EE-A29C-06 8 39873110 39873110 C T IDO2 Missense_Mutation p.P418S 0.32 tolerated(0.09) benign(0.124) TCGA-EE-A29C-06 8 41655036 41655036 G A ANK1 Intron 0.35 TCGA-EE-A29C-06 8 48869985 48869985 T A PRKDC Missense_Mutation p.Q54L 0.37 possibly_damaging(0.624) TCGA-EE-A29C-06 8 52320801 52320801 G A PXDNL Missense_Mutation p.S1128F 0.44 deleterious(0.01) benign(0.286) TCGA-EE-A29C-06 8 69351724 69351724 C T C8orf34 Intron 0.21 TCGA-EE-A29C-06 8 73848683 73848683 T C KCNB2 Missense_Mutation p.F365L 0.24 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A29C-06 8 73850264 73850264 C T KCNB2 Missense_Mutation p.P892S 0.15 tolerated_low_confidence(0.34) benign(0.042) TCGA-EE-A29C-06 8 74464404 74464404 G A STAU2 Missense_Mutation p.S458L 0.24 tolerated(0.15) benign(0.005) TCGA-EE-A29C-06 8 92998378 92998378 G A RUNX1T1 Missense_Mutation p.P429L 0.21 deleterious(0.04) benign(0.028) TCGA-EE-A29C-06 9 103035345 103035345 G A INVS Missense_Mutation p.D591N 0.26 tolerated(0.07) probably_damaging(0.971) TCGA-EE-A29C-06 9 104189764 104189764 C T ALDOB Silent p.Q180Q 0.28 TCGA-EE-A29C-06 9 107298400 107298400 G A OR13C3 Missense_Mutation p.S232L 0.26 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A29C-06 9 107599324 107599324 C T ABCA1 Nonsense_Mutation p.W416* 0.38 TCGA-EE-A29C-06 9 109688243 109688243 C T ZNF462 Missense_Mutation p.P684S 0.33 probably_damaging(0.997) TCGA-EE-A29C-06 9 116085415 116085415 G A WDR31 Silent p.S115S 0.29 TCGA-EE-A29C-06 9 119188112 119188112 G A ASTN2 3'UTR 0.24 TCGA-EE-A29C-06 9 121971120 121971120 C T BRINP1 Missense_Mutation p.R341H 0.31 deleterious(0) benign(0.289) TCGA-EE-A29C-06 9 125512178 125512178 C T OR1L6 Missense_Mutation p.L18F 0.29 tolerated(0.1) benign(0.01) TCGA-EE-A29C-06 9 130206806 130206806 C T ZNF79 Missense_Mutation p.P276L 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A29C-06 9 130494581 130494581 G A TOR2A Intron 0.59 TCGA-EE-A29C-06 9 130700160 130700160 C T DPM2 5'UTR 0.70 TCGA-EE-A29C-06 9 136287656 136287656 C T ADAMTS13 Silent p.S31S 0.62 TCGA-EE-A29C-06 9 136384048 136384048 C T TMEM8C Missense_Mutation p.G116E 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A29C-06 9 139272679 139272679 G A SNAPC4 Silent p.P1200P 0.21 TCGA-EE-A29C-06 9 139733721 139733721 G A RABL6 Missense_Mutation p.R515K 0.28 tolerated_low_confidence(1) unknown(0) TCGA-EE-A29C-06 9 139733722 139733722 G A RABL6 Silent p.R515R 0.28 TCGA-EE-A29C-06 9 34976626 34976626 G C KIAA1045 Missense_Mutation p.E246D 0.09 tolerated(0.06) benign(0.005) TCGA-EE-A29C-06 9 35561090 35561090 C T RUSC2 Missense_Mutation p.P1449S 0.42 tolerated(0.19) probably_damaging(0.998) TCGA-EE-A29C-06 9 65506623 65506623 C T SPATA31A7 Missense_Mutation p.E313K 0.21 tolerated(0.08) benign(0.004) TCGA-EE-A29C-06 9 72067160 72067160 G A APBA1 Missense_Mutation p.L616F 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A29C-06 9 86357495 86357495 G A GKAP1 Missense_Mutation p.L309F 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29C-06 9 96055255 96055255 C T WNK2 Silent p.F1873F 0.17 TCGA-EE-A29C-06 9 96079878 96079878 C T WNK2 Missense_Mutation p.P2235L 0.31 unknown(0) TCGA-EE-A29C-06 X 107865092 107865092 C T COL4A5 Missense_Mutation p.P913S 0.53 unknown(0) TCGA-EE-A29C-06 X 110544956 110544956 G A DCX Silent p.L429L 0.55 TCGA-EE-A29C-06 X 11318735 11318735 G A AMELX 3'UTR 0.62 TCGA-EE-A29C-06 X 123775804 123775804 G A TENM1 Silent p.I638I 0.58 TCGA-EE-A29C-06 X 12885625 12885625 C T TLR7 5'UTR 0.61 TCGA-EE-A29C-06 X 130407750 130407750 T G IGSF1 3'UTR 0.59 TCGA-EE-A29C-06 X 130407751 130407751 C T IGSF1 3'UTR 0.58 TCGA-EE-A29C-06 X 140996386 140996386 C T MAGEC1 Missense_Mutation p.R1066C 0.53 tolerated(0.21) unknown(0) TCGA-EE-A29C-06 X 149919571 149919571 C T MTMR1 Intron 0.47 TCGA-EE-A29C-06 X 151302932 151302932 C T MAGEA10 3'UTR 0.48 TCGA-EE-A29C-06 X 151869684 151869684 G A MAGEA6 Missense_Mutation p.R125Q 0.56 tolerated(0.64) benign(0.021) TCGA-EE-A29C-06 X 152158843 152158843 C T PNMA5 Missense_Mutation p.E434K 0.67 tolerated(0.23) benign(0.012) TCGA-EE-A29C-06 X 17746034 17746034 C T NHS Missense_Mutation p.P1249S 0.67 tolerated_low_confidence(0.97) benign(0.001) TCGA-EE-A29C-06 X 48371041 48371041 C T PORCN Missense_Mutation p.S207F 0.83 deleterious(0) probably_damaging(0.997) TCGA-EE-A29C-06 X 49845367 49845367 C T CLCN5 Silent p.I240I 0.70 TCGA-EE-A29C-06 X 50053615 50053615 C T CCNB3 Missense_Mutation p.L816F 0.72 tolerated(0.34) benign(0) TCGA-EE-A29C-06 X 53631699 53631699 G A HUWE1 Missense_Mutation p.P865S 0.50 benign(0.189) TCGA-EE-A29C-06 X 71360111 71360111 C T NHSL2 Missense_Mutation p.P905S 0.08 tolerated(0.66) benign(0.004) TCGA-EE-A29C-06 X 73046482 73046482 C T XIST RNA 0.58 TCGA-EE-A29C-06 X 86868978 86868978 A G KLHL4 Missense_Mutation p.N174S 0.76 tolerated(0.63) benign(0.012) TCGA-EE-A29D-06 10 101487313 101487313 C T COX15 Missense_Mutation p.E94K 0.69 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A29D-06 10 101639683 101639683 G A DNMBP Missense_Mutation p.S1478F 0.67 deleterious(0.03) benign(0.316) TCGA-EE-A29D-06 10 102049854 102049854 C T PKD2L1 Missense_Mutation p.G723E 0.41 tolerated(0.32) benign(0.02) TCGA-EE-A29D-06 10 102684495 102684497 AGG - FAM178A In_Frame_Del p.G580del 0.39 TCGA-EE-A29D-06 10 102794526 102794526 G A SFXN3 Silent p.R29R 0.28 TCGA-EE-A29D-06 10 104174841 104174841 G A PSD Silent p.I301I 0.23 TCGA-EE-A29D-06 10 105006213 105006213 G A RPEL1 Missense_Mutation p.E154K 0.24 tolerated(0.56) benign(0.018) TCGA-EE-A29D-06 10 105209017 105209017 T C CALHM2 Intron 0.64 TCGA-EE-A29D-06 10 105362802 105362802 C T SH3PXD2A Missense_Mutation p.D697N 0.28 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 10 106014984 106014984 C T GSTO1 Missense_Mutation p.P33L 0.21 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29D-06 10 106124612 106124612 C T CCDC147 Nonsense_Mutation p.R188* 0.25 TCGA-EE-A29D-06 10 106865152 106865152 C T SORCS3 Intron 0.54 TCGA-EE-A29D-06 10 106918717 106918717 G A SORCS3 Missense_Mutation p.S566N 0.31 deleterious(0) probably_damaging(0.947) TCGA-EE-A29D-06 10 106960879 106960879 G A SORCS3 Missense_Mutation p.G710E 0.32 deleterious(0.01) benign(0.298) TCGA-EE-A29D-06 10 107005328 107005328 C T SORCS3 Missense_Mutation p.S966F 0.20 deleterious(0.04) possibly_damaging(0.866) TCGA-EE-A29D-06 10 111892132 111892132 C T ADD3 Missense_Mutation p.P601L 0.57 tolerated(0.07) benign(0.192) TCGA-EE-A29D-06 10 115526241 115526241 C T PLEKHS1 Nonsense_Mutation p.Q28* 0.34 TCGA-EE-A29D-06 10 1175199 1175199 C T WDR37 Missense_Mutation p.P467L 0.46 tolerated(0.07) benign(0.059) TCGA-EE-A29D-06 10 117884941 117884941 G C GFRA1 Missense_Mutation p.C187W 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 10 118351422 118351422 C T PNLIPRP1 Silent p.N63N 0.16 TCGA-EE-A29D-06 10 118365049 118365049 G A PNLIPRP1 Missense_Mutation p.G442R 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 10 118394456 118394456 G A PNLIPRP2 Missense_Mutation p.D308N 0.73 tolerated(0.44) benign(0) TCGA-EE-A29D-06 10 119003692 119003692 C T SLC18A2 Missense_Mutation p.S111F 0.44 deleterious(0.03) benign(0.014) TCGA-EE-A29D-06 10 123298175 123298175 C T FGFR2 Missense_Mutation p.G227R 0.25 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 10 123844368 123844368 G A TACC2 Missense_Mutation p.E785K 0.29 possibly_damaging(0.553) TCGA-EE-A29D-06 10 123844719 123844719 C T TACC2 Nonsense_Mutation p.Q902* 0.17 TCGA-EE-A29D-06 10 123970430 123970430 C T TACC2 Missense_Mutation p.P2164S 0.28 benign(0.099) TCGA-EE-A29D-06 10 123974921 123974921 G A TACC2 Silent p.V2433V 0.65 TCGA-EE-A29D-06 10 123989891 123989891 G A TACC2 Missense_Mutation p.R2688Q 0.16 probably_damaging(0.994) TCGA-EE-A29D-06 10 123989949 123989949 T G TACC2 Missense_Mutation p.D2707E 0.35 probably_damaging(0.984) TCGA-EE-A29D-06 10 124045676 124045676 C T BTBD16 Nonsense_Mutation p.Q100* 0.27 TCGA-EE-A29D-06 10 124049455 124049455 C T BTBD16 Silent p.S139S 0.14 TCGA-EE-A29D-06 10 124214456 124214456 C T ARMS2 Silent p.I71I 0.22 TCGA-EE-A29D-06 10 124329690 124329690 C T DMBT1 Missense_Mutation p.P35L 0.17 tolerated_low_confidence(0.37) benign(0.01) TCGA-EE-A29D-06 10 124335982 124335982 C T DMBT1 Silent p.I117I 0.29 TCGA-EE-A29D-06 10 124335983 124335983 C T DMBT1 Silent p.L118L 0.29 TCGA-EE-A29D-06 10 124380692 124380692 G A DMBT1 Missense_Mutation p.D1673N 0.40 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A29D-06 10 124390643 124390643 C T DMBT1 Silent p.A1935A 0.29 TCGA-EE-A29D-06 10 124395546 124395546 C T DMBT1 Silent p.F2067F 0.23 TCGA-EE-A29D-06 10 127438010 127438010 C T EDRF1 Silent p.H1051H 0.80 TCGA-EE-A29D-06 10 127484704 127484704 G A UROS Nonsense_Mutation p.Q177* 0.22 TCGA-EE-A29D-06 10 128952171 128952171 C T FAM196A Missense_Mutation p.G401R 0.20 deleterious(0.04) probably_damaging(1) TCGA-EE-A29D-06 10 129055604 129055604 C T DOCK1 Silent p.F964F 0.25 TCGA-EE-A29D-06 10 129537220 129537220 C T FOXI2 Silent p.T316T 0.16 TCGA-EE-A29D-06 10 129859246 129859246 C T PTPRE Silent p.P185P 0.19 TCGA-EE-A29D-06 10 129859247 129859247 T A PTPRE Missense_Mutation p.C186S 0.18 tolerated(0.08) benign(0.011) TCGA-EE-A29D-06 10 129861438 129861438 G A PTPRE Silent p.R239R 0.33 TCGA-EE-A29D-06 10 129904029 129904029 G A MKI67 Silent p.T2025T 0.17 TCGA-EE-A29D-06 10 129905334 129905334 G A MKI67 Silent p.G1590G 0.61 TCGA-EE-A29D-06 10 129905442 129905442 A G MKI67 Silent p.F1554F 0.67 TCGA-EE-A29D-06 10 131506243 131506243 C T MGMT Silent p.F101F 0.63 TCGA-EE-A29D-06 10 13271644 13271644 C T UCMA Missense_Mutation p.E96K 0.41 tolerated(0.13) possibly_damaging(0.544) TCGA-EE-A29D-06 10 133107539 133107539 C T TCERG1L Silent p.P122P 0.48 TCGA-EE-A29D-06 10 133967467 133967467 G A JAKMIP3 Silent p.R729R 0.21 TCGA-EE-A29D-06 10 134752115 134752115 C T TTC40 Missense_Mutation p.E172K 0.60 tolerated(0.09) benign(0.32) TCGA-EE-A29D-06 10 135009239 135009239 G C KNDC1 Missense_Mutation p.A550P 0.33 tolerated(0.06) possibly_damaging(0.879) TCGA-EE-A29D-06 10 135015131 135015131 C T KNDC1 Missense_Mutation p.S1039F 0.74 deleterious(0.04) benign(0.118) TCGA-EE-A29D-06 10 135015204 135015204 G A KNDC1 Silent p.V1063V 0.40 TCGA-EE-A29D-06 10 135027620 135027620 C T KNDC1 Silent p.T1557T 0.25 TCGA-EE-A29D-06 10 135053508 135053508 T G VENTX Missense_Mutation p.F159V 0.59 tolerated(0.09) benign(0.13) TCGA-EE-A29D-06 10 135195059 135195059 C T PAOX Missense_Mutation p.S255F 0.23 deleterious(0) benign(0.287) TCGA-EE-A29D-06 10 135369312 135369312 G A SYCE1 Missense_Mutation p.L231F 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 10 135440219 135440219 G A FRG2B Missense_Mutation p.L10F 0.17 tolerated(0.44) possibly_damaging(0.663) TCGA-EE-A29D-06 10 14709678 14709678 G A FAM107B Nonsense_Mutation p.R142* 0.24 TCGA-EE-A29D-06 10 14894443 14894443 G A HSPA14 Missense_Mutation p.R216Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 10 15115175 15115175 A T OLAH Missense_Mutation p.I302F 0.25 deleterious(0) probably_damaging(0.976) TCGA-EE-A29D-06 10 15730014 15730014 C T ITGA8 Missense_Mutation p.G123R 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A29D-06 10 18112382 18112382 G A MRC1 Missense_Mutation p.G134S 0.62 tolerated(0.26) probably_damaging(1) TCGA-EE-A29D-06 10 20357123 20357123 C T PLXDC2 Missense_Mutation p.P166S 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 10 21102879 21102879 G A NEBL Missense_Mutation p.H779Y 0.22 deleterious(0.04) possibly_damaging(0.485) TCGA-EE-A29D-06 10 21106608 21106608 C T NEBL Missense_Mutation p.G690E 0.15 tolerated(1) benign(0.014) TCGA-EE-A29D-06 10 22830831 22830831 G A PIP4K2A Missense_Mutation p.P313L 0.48 deleterious(0) possibly_damaging(0.833) TCGA-EE-A29D-06 10 23295898 23295898 G A ARMC3 Missense_Mutation p.S606N 0.21 tolerated(0.16) benign(0.005) TCGA-EE-A29D-06 10 24508743 24508743 G A KIAA1217 Missense_Mutation p.D87N 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 10 24722115 24722115 G A KIAA1217 Missense_Mutation p.D249N 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 10 24762307 24762307 G A KIAA1217 Missense_Mutation p.G333R 0.19 deleterious(0) probably_damaging(0.915) TCGA-EE-A29D-06 10 24762308 24762308 G A KIAA1217 Missense_Mutation p.G333E 0.19 deleterious(0) possibly_damaging(0.786) TCGA-EE-A29D-06 10 24834694 24834694 C A KIAA1217 Intron 0.31 TCGA-EE-A29D-06 10 25279499 25279499 C T ENKUR Missense_Mutation p.E163K 0.18 tolerated(0.09) benign(0.064) TCGA-EE-A29D-06 10 26432477 26432477 C T MYO3A Missense_Mutation p.S788F 0.23 deleterious(0) benign(0.114) TCGA-EE-A29D-06 10 26455093 26455093 C T MYO3A Missense_Mutation p.L1033F 0.20 deleterious(0) possibly_damaging(0.714) TCGA-EE-A29D-06 10 26589851 26589851 C T GAD2 Silent p.F573F 0.26 TCGA-EE-A29D-06 10 26789788 26789788 C T APBB1IP Silent p.L67L 0.17 TCGA-EE-A29D-06 10 26790013 26790013 A G APBB1IP Silent p.P142P 0.49 TCGA-EE-A29D-06 10 26880239 26880239 G A LINC00264 Intron 0.40 TCGA-EE-A29D-06 10 27538822 27538822 G A RP11-85G18.6 Intron 0.46 TCGA-EE-A29D-06 10 27539630 27539630 C T RP11-85G18.6 RNA 0.52 TCGA-EE-A29D-06 10 27702272 27702272 C T PTCHD3 Missense_Mutation p.G303E 0.16 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 10 27702450 27702450 C T PTCHD3 Missense_Mutation p.E244K 0.51 tolerated(0.36) benign(0.014) TCGA-EE-A29D-06 10 27702577 27702577 C T PTCHD3 Silent p.R201R 0.53 TCGA-EE-A29D-06 10 28196706 28196706 C T ARMC4 Missense_Mutation p.M832I 0.42 tolerated(0.22) benign(0.005) TCGA-EE-A29D-06 10 28273157 28273157 C T ARMC4 Missense_Mutation p.G213E 0.46 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 10 28491141 28491141 C T MPP7 Missense_Mutation p.E33K 0.22 deleterious(0.02) benign(0.015) TCGA-EE-A29D-06 10 30306786 30306786 G A KIAA1462 3'UTR 0.14 TCGA-EE-A29D-06 10 30306787 30306787 G A KIAA1462 3'UTR 0.39 TCGA-EE-A29D-06 10 32101679 32101679 C T ARHGAP12 Missense_Mutation p.R636Q 0.17 deleterious(0.01) benign(0.165) TCGA-EE-A29D-06 10 32740550 32740550 G A CCDC7 5'UTR 0.23 TCGA-EE-A29D-06 10 33510724 33510724 C T NRP1 Missense_Mutation p.R402Q 0.54 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 10 35500562 35500562 C T CREM Intron 0.42 TCGA-EE-A29D-06 10 37422872 37422872 G A ANKRD30A Missense_Mutation p.G160R 0.18 tolerated(0.18) benign(0.011) TCGA-EE-A29D-06 10 37438752 37438752 G A ANKRD30A Silent p.L484L 0.39 TCGA-EE-A29D-06 10 37490223 37490223 G A ANKRD30A Missense_Mutation p.E891K 0.19 tolerated(0.44) benign(0.064) TCGA-EE-A29D-06 10 37507929 37507929 G A ANKRD30A Missense_Mutation p.E1041K 0.39 deleterious(0.01) possibly_damaging(0.636) TCGA-EE-A29D-06 10 37508136 37508136 G T ANKRD30A Missense_Mutation p.G1110W 0.23 deleterious(0.01) possibly_damaging(0.692) TCGA-EE-A29D-06 10 37508414 37508414 G A ANKRD30A Silent p.R1202R 0.26 TCGA-EE-A29D-06 10 43016150 43016150 A G ZNF37BP RNA 0.27 TCGA-EE-A29D-06 10 43127859 43127859 G A ZNF33B Missense_Mutation p.S13L 0.17 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 10 43606806 43606806 C T RET Missense_Mutation p.A472V 0.16 tolerated(0.4) benign(0.003) TCGA-EE-A29D-06 10 43610101 43610101 G A RET Missense_Mutation p.V685I 0.23 tolerated(1) benign(0.001) TCGA-EE-A29D-06 10 44052675 44052675 G A ZNF239 Missense_Mutation p.H285Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 10 44053046 44053046 T A ZNF239 Missense_Mutation p.K161I 0.54 deleterious(0.01) probably_damaging(0.909) TCGA-EE-A29D-06 10 44868757 44868757 C T CXCL12 3'Flank 0.29 TCGA-EE-A29D-06 10 45430455 45430455 C T TMEM72 Missense_Mutation p.S234F 0.22 deleterious(0) possibly_damaging(0.632) TCGA-EE-A29D-06 10 45430456 45430456 C T TMEM72 Silent p.S234S 0.23 TCGA-EE-A29D-06 10 46111848 46111848 G A ZFAND4 3'UTR 0.24 TCGA-EE-A29D-06 10 46281030 46281030 C T FAM21C Missense_Mutation p.S921F 0.29 tolerated(0.11) possibly_damaging(0.724) TCGA-EE-A29D-06 10 46967529 46967529 G A SYT15 Missense_Mutation p.P183L 0.13 deleterious(0.05) benign(0.068) TCGA-EE-A29D-06 10 46999402 46999402 G A GPRIN2 Silent p.R174R 0.11 TCGA-EE-A29D-06 10 46999883 46999883 G A GPRIN2 Missense_Mutation p.A335T 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 10 47087994 47087994 A C NPY4R 3'UTR 0.25 TCGA-EE-A29D-06 10 48370815 48370815 G A ZNF488 Missense_Mutation p.G95R 0.25 tolerated(0.43) benign(0.133) TCGA-EE-A29D-06 10 48371337 48371337 C T ZNF488 Silent p.L269L 0.29 TCGA-EE-A29D-06 10 48382100 48382100 C T RBP3 Silent p.V1183V 0.25 TCGA-EE-A29D-06 10 48389276 48389276 T C RBP3 Silent p.Q534Q 0.29 TCGA-EE-A29D-06 10 48389863 48389863 C T RBP3 Missense_Mutation p.D339N 0.36 tolerated(0.43) possibly_damaging(0.496) TCGA-EE-A29D-06 10 48416652 48416652 G A GDF2 Silent p.S14S 0.33 TCGA-EE-A29D-06 10 49459654 49459654 G A FRMPD2 Missense_Mutation p.L36F 0.24 deleterious(0) possibly_damaging(0.894) TCGA-EE-A29D-06 10 50256622 50256622 C T VSTM4 Missense_Mutation p.E226K 0.19 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 10 50530581 50530581 G A C10orf71 5'UTR 0.19 TCGA-EE-A29D-06 10 50531107 50531107 C T C10orf71 Missense_Mutation p.P173S 0.23 tolerated(0.61) possibly_damaging(0.487) TCGA-EE-A29D-06 10 50819730 50819730 G A SLC18A3 Nonsense_Mutation p.W315* 0.21 TCGA-EE-A29D-06 10 50954001 50954001 C T OGDHL Missense_Mutation p.R440Q 0.28 deleterious(0.01) possibly_damaging(0.603) TCGA-EE-A29D-06 10 50957825 50957825 C T OGDHL Missense_Mutation p.D312N 0.30 deleterious(0) benign(0.197) TCGA-EE-A29D-06 10 51464851 51464851 G A AGAP7 Silent p.S535S 0.64 TCGA-EE-A29D-06 10 51465496 51465496 C T AGAP7 Silent p.K320K 0.19 TCGA-EE-A29D-06 10 52389385 52389385 C T RP11-50E11.3 RNA 0.15 TCGA-EE-A29D-06 10 5255069 5255069 G A AKR1C4 Missense_Mutation p.V265I 0.41 tolerated(0.2) possibly_damaging(0.856) TCGA-EE-A29D-06 10 52575934 52575934 C T A1CF Missense_Mutation p.G333R 0.23 tolerated(0.12) probably_damaging(0.915) TCGA-EE-A29D-06 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 10 54530530 54530530 G T MBL2 Silent p.G68G 0.28 TCGA-EE-A29D-06 10 5494464 5494464 C A NET1 Silent p.T169T 0.46 TCGA-EE-A29D-06 10 5541215 5541215 C T CALML5 Missense_Mutation p.E63K 0.53 tolerated(0.07) benign(0.053) TCGA-EE-A29D-06 10 55566593 55566593 C T PCDH15 Missense_Mutation p.G1598R 0.19 tolerated_low_confidence(0.07) benign(0.171) TCGA-EE-A29D-06 10 55566674 55566674 G A PCDH15 Nonsense_Mutation p.R1571* 0.39 TCGA-EE-A29D-06 10 55569108 55569108 C T PCDH15 Missense_Mutation p.E502K 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 10 55570420 55570420 C T PCDH15 Missense_Mutation p.E1467K 0.27 benign(0.045) TCGA-EE-A29D-06 10 55581748 55581748 G A PCDH15 Missense_Mutation p.S1915L 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29D-06 10 55582416 55582416 G A PCDH15 Silent p.I1692I 0.23 TCGA-EE-A29D-06 10 55582895 55582895 C T PCDH15 Missense_Mutation p.E1533K 0.58 deleterious_low_confidence(0.01) benign(0.049) TCGA-EE-A29D-06 10 55943267 55943267 G A PCDH15 Silent p.F509F 0.35 TCGA-EE-A29D-06 10 55955461 55955461 C T PCDH15 Silent p.L429L 0.23 TCGA-EE-A29D-06 10 56138694 56138694 G A PCDH15 Silent p.L56L 0.27 TCGA-EE-A29D-06 10 5773086 5773086 C T FAM208B Missense_Mutation p.A375V 0.28 tolerated(0.26) benign(0.01) TCGA-EE-A29D-06 10 6054729 6054729 G A IL2RA 3'UTR 0.33 TCGA-EE-A29D-06 10 6063460 6063460 C T IL2RA Missense_Mutation p.M188I 0.26 tolerated(0.18) benign(0.002) TCGA-EE-A29D-06 10 61005390 61005390 C T PHYHIPL 3'UTR 0.25 TCGA-EE-A29D-06 10 61011339 61011339 C T FAM13C Missense_Mutation p.G544R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 10 61443910 61443910 C T SLC16A9 Missense_Mutation p.G47E 0.64 deleterious(0) probably_damaging(0.983) TCGA-EE-A29D-06 10 61819670 61819670 G A ANK3 Intron 0.21 TCGA-EE-A29D-06 10 61832561 61832561 C T ANK3 Missense_Mutation p.G2693E 0.63 benign(0.003) TCGA-EE-A29D-06 10 61833787 61833787 C T ANK3 Silent p.R2284R 0.61 TCGA-EE-A29D-06 10 61833981 61833981 G A ANK3 Nonsense_Mutation p.Q2220* 0.65 TCGA-EE-A29D-06 10 61834219 61834219 G A ANK3 Silent p.A2140A 0.21 TCGA-EE-A29D-06 10 61834455 61834455 C T ANK3 Missense_Mutation p.E2062K 0.28 probably_damaging(0.956) TCGA-EE-A29D-06 10 61835987 61835987 G A ANK3 Missense_Mutation p.S1551F 0.25 probably_damaging(0.979) TCGA-EE-A29D-06 10 61894074 61894074 C T ANK3 Silent p.R932R 0.25 TCGA-EE-A29D-06 10 6553128 6553128 C T PRKCQ Silent p.K49K 0.39 TCGA-EE-A29D-06 10 67748510 67748510 C T CTNNA3 Silent p.A735A 0.30 TCGA-EE-A29D-06 10 67829092 67829092 G A CTNNA3 Silent p.I711I 0.46 TCGA-EE-A29D-06 10 68687190 68687190 C T LRRTM3 Silent p.I172I 0.64 TCGA-EE-A29D-06 10 68940239 68940239 C T CTNNA3 Missense_Mutation p.E295K 0.40 tolerated(0.68) benign(0.004) TCGA-EE-A29D-06 10 69366690 69366690 C T CTNNA3 Missense_Mutation p.G73R 0.38 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 10 70190408 70190408 G A DNA2 Missense_Mutation p.L751F 0.78 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 10 70333188 70333188 C T TET1 Silent p.L365L 0.28 TCGA-EE-A29D-06 10 70940115 70940115 C T SUPV3L1 Missense_Mutation p.A23V 0.37 tolerated_low_confidence(0.22) benign(0.002) TCGA-EE-A29D-06 10 71026519 71026519 C T HKDC1 3'UTR 0.32 TCGA-EE-A29D-06 10 71835457 71835457 C T H2AFY2 Missense_Mutation p.R15C 0.65 deleterious(0) unknown(0) TCGA-EE-A29D-06 10 72299516 72299516 G A PALD1 Missense_Mutation p.E636K 0.58 tolerated(0.34) benign(0.005) TCGA-EE-A29D-06 10 72300940 72300940 G A PALD1 Missense_Mutation p.G664D 0.59 deleterious(0) probably_damaging(0.976) TCGA-EE-A29D-06 10 72509663 72509663 G A ADAMTS14 Silent p.L786L 0.31 TCGA-EE-A29D-06 10 73511435 73511435 G A C10orf54 Silent p.F296F 0.25 TCGA-EE-A29D-06 10 73572526 73572526 G A CDH23 Missense_Mutation p.G931E 0.29 deleterious_low_confidence(0) benign(0.137) TCGA-EE-A29D-06 10 73822590 73822590 C T SPOCK2 Silent p.E401E 0.41 TCGA-EE-A29D-06 10 73892920 73892920 G A ASCC1 Nonsense_Mutation p.R284* 0.21 TCGA-EE-A29D-06 10 75090992 75090992 C T TTC18 Silent p.E310E 0.24 TCGA-EE-A29D-06 10 7618858 7618858 G A ITIH5 Silent p.I512I 0.25 TCGA-EE-A29D-06 10 76603085 76603085 A C KAT6B Missense_Mutation p.K157T 0.67 probably_damaging(0.958) TCGA-EE-A29D-06 10 76735624 76735624 C T KAT6B Missense_Mutation p.S510F 0.47 benign(0.235) TCGA-EE-A29D-06 10 76857622 76857622 C T DUSP13 Silent p.Q57Q 0.27 TCGA-EE-A29D-06 10 7749185 7749185 G A ITIH2 Missense_Mutation p.E61K 0.39 tolerated(0.45) benign(0.027) TCGA-EE-A29D-06 10 7829871 7829871 G A KIN Missense_Mutation p.P9L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 10 8051106 8051106 C T TAF3 Missense_Mutation p.T794I 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.507) TCGA-EE-A29D-06 10 8100445 8100445 C T GATA3 Missense_Mutation p.S140F 0.25 deleterious(0) possibly_damaging(0.741) TCGA-EE-A29D-06 10 81060673 81060673 C T ZMIZ1 Nonsense_Mutation p.Q665* 0.50 TCGA-EE-A29D-06 10 81373730 81373730 G A SFTPA1 Missense_Mutation p.G218E 0.66 tolerated(0.06) benign(0.069) TCGA-EE-A29D-06 10 81702205 81702205 C T SFTPD Silent p.G124G 0.35 TCGA-EE-A29D-06 10 81702241 81702241 A C SFTPD Silent p.G112G 0.21 TCGA-EE-A29D-06 10 81928875 81928875 T C ANXA11 Silent p.G137G 0.19 TCGA-EE-A29D-06 10 82098173 82098173 C T DYDC1 Intron 0.47 TCGA-EE-A29D-06 10 85970861 85970861 C T CDHR1 Silent p.L475L 0.27 TCGA-EE-A29D-06 10 85984098 85984098 C T LRIT2 Missense_Mutation p.E295K 0.32 tolerated(0.77) benign(0.072) TCGA-EE-A29D-06 10 87484311 87484311 G A GRID1 Silent p.I552I 0.29 TCGA-EE-A29D-06 10 875404 875404 G A LARP4B Missense_Mutation p.P349L 0.44 deleterious(0) probably_damaging(0.98) TCGA-EE-A29D-06 10 88419742 88419742 C T OPN4 Silent p.I308I 0.68 TCGA-EE-A29D-06 10 88722411 88722411 G A SNCG Silent p.E114E 0.20 TCGA-EE-A29D-06 10 88836409 88836409 G A GLUD1 Silent p.I150I 0.34 TCGA-EE-A29D-06 10 91143531 91143531 G A IFIT1B Missense_Mutation p.G154E 0.23 tolerated(0.08) benign(0.104) TCGA-EE-A29D-06 10 92982654 92982654 T G PCGF5 Missense_Mutation p.V9G 0.57 deleterious(0) possibly_damaging(0.536) TCGA-EE-A29D-06 10 95385332 95385332 G A PDE6C Missense_Mutation p.E289K 0.71 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 10 95720261 95720261 C T PIPSL RNA 0.46 TCGA-EE-A29D-06 10 95791303 95791303 G A PLCE1 Missense_Mutation p.G167E 0.28 tolerated_low_confidence(0.1) possibly_damaging(0.548) TCGA-EE-A29D-06 10 95791319 95791319 C T PLCE1 Silent p.I172I 0.24 TCGA-EE-A29D-06 10 96348103 96348103 G A HELLS Missense_Mutation p.A482T 0.15 tolerated(0.09) benign(0.363) TCGA-EE-A29D-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.17 tolerated(0.19) benign(0.064) TCGA-EE-A29D-06 10 96707551 96707551 C T CYP2C9 Missense_Mutation p.P166L 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A29D-06 10 96707561 96707561 C T CYP2C9 Silent p.I169I 0.48 TCGA-EE-A29D-06 10 96826964 96826964 C T CYP2C8 Splice_Site p.X161_splice 0.24 TCGA-EE-A29D-06 10 96827158 96827158 G A CYP2C8 Intron 0.34 TCGA-EE-A29D-06 10 96998373 96998373 C T PDLIM1 Missense_Mutation p.G252E 0.28 deleterious(0) possibly_damaging(0.601) TCGA-EE-A29D-06 10 97031472 97031472 C T PDLIM1 Missense_Mutation p.E56K 0.37 tolerated(0.28) possibly_damaging(0.603) TCGA-EE-A29D-06 10 97078132 97078132 G A SORBS1 Silent p.L1252L 0.69 TCGA-EE-A29D-06 10 97096790 97096790 G A SORBS1 Missense_Mutation p.R1043C 0.16 tolerated_low_confidence(0.17) benign(0.394) TCGA-EE-A29D-06 10 97604267 97604267 G A ENTPD1 Missense_Mutation p.D162N 0.27 tolerated(0.38) benign(0.001) TCGA-EE-A29D-06 10 98355344 98355344 C T PIK3AP1 Missense_Mutation p.R803K 0.25 deleterious(0) unknown(0) TCGA-EE-A29D-06 10 98743002 98743002 C T C10orf12 Missense_Mutation p.P619S 0.29 tolerated(0.9) benign(0.076) TCGA-EE-A29D-06 10 98808836 98808836 G A SLIT1 Silent p.L447L 0.68 TCGA-EE-A29D-06 10 99126654 99126654 C A RRP12 Silent p.V1020V 0.29 TCGA-EE-A29D-06 10 99126808 99126808 G A RRP12 Missense_Mutation p.R1013C 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 10 99131889 99131889 G A RRP12 Missense_Mutation p.P762S 0.19 deleterious(0.02) possibly_damaging(0.749) TCGA-EE-A29D-06 11 1016812 1016812 T C MUC6 Missense_Mutation p.T1997A 0.02 probably_damaging(0.958) TCGA-EE-A29D-06 11 101946634 101946634 G A C11orf70 Missense_Mutation p.E156K 0.32 tolerated(0.12) possibly_damaging(0.65) TCGA-EE-A29D-06 11 102207793 102207793 G A BIRC3 Missense_Mutation p.R592K 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 102394020 102394020 T C MMP7 Silent p.Q242Q 0.32 TCGA-EE-A29D-06 11 1029144 1029144 G A MUC6 Nonsense_Mutation p.Q428* 0.43 TCGA-EE-A29D-06 11 10503755 10503755 C T AMPD3 Missense_Mutation p.P200L 0.46 tolerated(0.35) benign(0) TCGA-EE-A29D-06 11 10508849 10508849 G A AMPD3 Missense_Mutation p.E302K 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 11 10521693 10521693 A G AMPD3 Missense_Mutation p.K549E 0.39 tolerated(0.13) benign(0.43) TCGA-EE-A29D-06 11 105789577 105789577 G A GRIA4 Missense_Mutation p.G470E 0.88 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 10582227 10582227 G A LYVE1 Missense_Mutation p.S173F 0.21 deleterious(0) benign(0.014) TCGA-EE-A29D-06 11 107207325 107207325 G A CWF19L2 Missense_Mutation p.L773F 0.31 deleterious(0.02) probably_damaging(0.917) TCGA-EE-A29D-06 11 107506373 107506373 C T ELMOD1 Missense_Mutation p.S101F 0.35 deleterious(0.04) possibly_damaging(0.901) TCGA-EE-A29D-06 11 107518278 107518278 C T ELMOD1 Missense_Mutation p.P169S 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 108382448 108382448 T A EXPH5 Missense_Mutation p.K1262N 0.81 deleterious(0) probably_damaging(0.978) TCGA-EE-A29D-06 11 1095663 1095663 G A MUC2 Splice_Site p.X2059_splice 0.27 TCGA-EE-A29D-06 11 1101122 1101122 C T MUC2 Silent p.L2507L 0.17 TCGA-EE-A29D-06 11 110450793 110450793 C T ARHGAP20 Silent p.Q959Q 0.61 TCGA-EE-A29D-06 11 110482075 110482075 C T ARHGAP20 Silent p.A222A 0.35 TCGA-EE-A29D-06 11 112070428 112070428 C T BCO2 Missense_Mutation p.S248F 0.36 tolerated(0.75) benign(0.008) TCGA-EE-A29D-06 11 113073133 113073133 G A NCAM1 Missense_Mutation p.G88R 0.33 tolerated(0.11) probably_damaging(0.992) TCGA-EE-A29D-06 11 11373733 11373733 G A CSNK2A3 Missense_Mutation p.R312W 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 113860197 113860197 C T HTR3A Silent p.N421N 0.36 TCGA-EE-A29D-06 11 113934891 113934891 C T ZBTB16 Missense_Mutation p.T290I 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 11 114569187 114569187 G A NXPE2 Missense_Mutation p.G185S 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 115102181 115102181 G A CADM1 Nonsense_Mutation p.Q152* 0.83 TCGA-EE-A29D-06 11 1162206 1162206 G A MUC5AC Missense_Mutation p.G572E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 117280369 117280369 C T CEP164 Missense_Mutation p.H1262Y 0.39 deleterious(0.03) benign(0.005) TCGA-EE-A29D-06 11 117299146 117299146 C T DSCAML1 Missense_Mutation p.M2080I 0.39 tolerated_low_confidence(0.12) benign(0.058) TCGA-EE-A29D-06 11 118213393 118213393 C T CD3D 5'UTR 0.33 TCGA-EE-A29D-06 11 118267050 118267050 C T UBE4A Silent p.N1039N 0.40 TCGA-EE-A29D-06 11 118754686 118754686 G A CXCR5 Silent p.E12E 1.00 TCGA-EE-A29D-06 11 118986927 118986927 C T C2CD2L Silent p.S695S 0.83 TCGA-EE-A29D-06 11 119031635 119031635 G A ABCG4 Missense_Mutation p.R587Q 0.92 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 11 11976465 11976465 C T USP47 Missense_Mutation p.P1178S 0.40 deleterious(0.05) benign(0.01) TCGA-EE-A29D-06 11 12023884 12023884 C T DKK3 Missense_Mutation p.G105E 0.30 deleterious(0.05) benign(0.224) TCGA-EE-A29D-06 11 121016577 121016577 C T TECTA Missense_Mutation p.P1286L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 12277206 12277206 T G MICAL2 Missense_Mutation p.V955G 0.36 deleterious(0.01) benign(0.11) TCGA-EE-A29D-06 11 122805454 122805454 C T C11orf63 Silent p.L435L 0.83 TCGA-EE-A29D-06 11 12315464 12315464 G A MICALCL Silent p.R162R 0.41 TCGA-EE-A29D-06 11 123676665 123676665 C T OR6M1 Silent p.T131T 0.38 TCGA-EE-A29D-06 11 123777295 123777295 C T OR8D4 Missense_Mutation p.R53C 0.86 deleterious(0) benign(0.006) TCGA-EE-A29D-06 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.91 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29D-06 11 123810885 123810885 G A OR4D5 Missense_Mutation p.A188T 0.48 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29D-06 11 123811241 123811241 G A OR4D5 Silent p.K306K 0.28 TCGA-EE-A29D-06 11 123848249 123848249 G A OR10S1 Silent p.I50I 0.37 TCGA-EE-A29D-06 11 123886642 123886642 C T OR10G4 Missense_Mutation p.R121C 0.49 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A29D-06 11 123886864 123886864 G A OR10G4 Missense_Mutation p.V195M 0.86 deleterious(0) benign(0.023) TCGA-EE-A29D-06 11 123909126 123909126 C T OR10G7 Missense_Mutation p.E195K 0.11 tolerated(0.06) possibly_damaging(0.779) TCGA-EE-A29D-06 11 123909299 123909299 C T OR10G7 Missense_Mutation p.G137E 0.38 tolerated(0.3) benign(0.053) TCGA-EE-A29D-06 11 124120970 124120970 C T OR8G1 Missense_Mutation p.P183L 0.41 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-EE-A29D-06 11 124180576 124180576 G A OR8D1 Silent p.L29L 0.71 TCGA-EE-A29D-06 11 124180579 124180579 G A OR8D1 Silent p.F28F 0.30 TCGA-EE-A29D-06 11 124252426 124252426 C T OR8B2 Missense_Mutation p.V272I 0.86 tolerated_low_confidence(1) benign(0.004) TCGA-EE-A29D-06 11 124489947 124489947 G A PANX3 3'UTR 0.50 TCGA-EE-A29D-06 11 125887045 125887045 G A CDON Missense_Mutation p.S289F 0.33 deleterious(0.04) benign(0.367) TCGA-EE-A29D-06 11 126143258 126143258 C T FOXRED1 Missense_Mutation p.P149S 0.32 tolerated(0.06) benign(0.213) TCGA-EE-A29D-06 11 126143259 126143259 C T FOXRED1 Missense_Mutation p.P149L 0.33 deleterious(0.05) benign(0.033) TCGA-EE-A29D-06 11 1267073 1267073 G T MUC5B Missense_Mutation p.G2988V 0.27 unknown(0) TCGA-EE-A29D-06 11 1269516 1269516 G A MUC5B Silent p.L3802L 0.14 TCGA-EE-A29D-06 11 1269517 1269517 G A MUC5B Missense_Mutation p.G3803S 0.14 unknown(0) TCGA-EE-A29D-06 11 1269833 1269833 C T MUC5B Missense_Mutation p.S3908F 0.14 unknown(0) TCGA-EE-A29D-06 11 1274170 1274170 G A MUC5B Silent p.S5059S 0.25 TCGA-EE-A29D-06 11 1279403 1279403 G A MUC5B Missense_Mutation p.E5509K 0.25 unknown(0) TCGA-EE-A29D-06 11 128628127 128628127 C T FLI1 Missense_Mutation p.H46Y 1.00 tolerated(0.23) possibly_damaging(0.869) TCGA-EE-A29D-06 11 128843387 128843387 G A ARHGAP32 Intron 1.00 TCGA-EE-A29D-06 11 129306719 129306719 C T BARX2 Silent p.V87V 0.30 TCGA-EE-A29D-06 11 129727269 129727269 A G TMEM45B Missense_Mutation p.N211S 0.80 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 11 132184631 132184631 G A NTM Intron 0.47 TCGA-EE-A29D-06 11 133790959 133790959 G A IGSF9B Silent p.P887P 0.44 TCGA-EE-A29D-06 11 134051017 134051017 G A NCAPD3 Silent p.I838I 0.46 TCGA-EE-A29D-06 11 134151287 134151287 C T GLB1L3 Silent p.L127L 0.37 TCGA-EE-A29D-06 11 134151925 134151925 C T GLB1L3 Silent p.F146F 0.29 TCGA-EE-A29D-06 11 134179596 134179596 C T GLB1L3 Silent p.N346N 0.75 TCGA-EE-A29D-06 11 134182771 134182771 C T GLB1L3 Missense_Mutation p.P497L 0.60 deleterious(0) benign(0.245) TCGA-EE-A29D-06 11 134214297 134214297 C T GLB1L2 Silent p.L101L 0.09 TCGA-EE-A29D-06 11 134257515 134257515 G A B3GAT1 Silent p.I13I 0.37 TCGA-EE-A29D-06 11 1605732 1605732 C A KRTAP5-1 Missense_Mutation p.G250W 0.48 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29D-06 11 16812746 16812746 C T PLEKHA7 Missense_Mutation p.E916K 0.28 deleterious(0) benign(0.26) TCGA-EE-A29D-06 11 16822595 16822595 G A PLEKHA7 Silent p.L779L 0.22 TCGA-EE-A29D-06 11 17099295 17099295 G A RPS13 5'UTR 0.25 TCGA-EE-A29D-06 11 17464811 17464811 A T ABCC8 Missense_Mutation p.L461I 0.44 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A29D-06 11 17538995 17538995 C G USH1C Intron 0.30 TCGA-EE-A29D-06 11 18159579 18159579 C T MRGPRX3 Missense_Mutation p.S277F 0.19 deleterious(0.01) benign(0.349) TCGA-EE-A29D-06 11 18231770 18231770 G A RP11-113D6.10 3'UTR 0.40 TCGA-EE-A29D-06 11 18252958 18252958 G A SAA4 3'UTR 0.24 TCGA-EE-A29D-06 11 18528467 18528467 G A TSG101 Missense_Mutation p.S162F 0.15 deleterious(0.04) probably_damaging(0.936) TCGA-EE-A29D-06 11 1862278 1862278 G A TNNI2 Silent p.Q98Q 0.11 TCGA-EE-A29D-06 11 18955401 18955401 C T MRGPRX1 Missense_Mutation p.E311K 0.31 tolerated(0.09) benign(0.175) TCGA-EE-A29D-06 11 18956360 18956360 G A MRGPRX1 5'UTR 0.42 TCGA-EE-A29D-06 11 19970322 19970322 C T NAV2 Silent p.L804L 0.47 TCGA-EE-A29D-06 11 20065598 20065598 C T NAV2 Silent p.D1016D 0.19 TCGA-EE-A29D-06 11 20177792 20177792 C T DBX1 Missense_Mutation p.G373S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.523) TCGA-EE-A29D-06 11 205475 205475 G A BET1L Intron 0.50 TCGA-EE-A29D-06 11 20668406 20668406 G A SLC6A5 Missense_Mutation p.E666K 0.20 deleterious(0.04) benign(0.053) TCGA-EE-A29D-06 11 20699541 20699541 A G NELL1 Missense_Mutation p.N40S 0.54 deleterious(0.03) possibly_damaging(0.472) TCGA-EE-A29D-06 11 20869190 20869190 G A NELL1 Missense_Mutation p.G133R 0.15 tolerated(0.06) benign(0.082) TCGA-EE-A29D-06 11 218814 218814 C T SIRT3 Intron 0.30 TCGA-EE-A29D-06 11 2482942 2482942 G A KCNQ1 Intron 0.45 TCGA-EE-A29D-06 11 24936055 24936055 C T LUZP2 Missense_Mutation p.R165C 0.49 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 11 25004692 25004692 G A LUZP2 Missense_Mutation p.M206I 0.23 deleterious(0.01) benign(0.085) TCGA-EE-A29D-06 11 26584716 26584716 C T MUC15 Missense_Mutation p.R291K 0.21 tolerated(0.31) possibly_damaging(0.567) TCGA-EE-A29D-06 11 27016273 27016273 G A FIBIN Missense_Mutation p.G67E 0.15 tolerated_low_confidence(0.93) benign(0.011) TCGA-EE-A29D-06 11 27016395 27016395 G A FIBIN Missense_Mutation p.D108N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 27401879 27401879 G A LGR4 Missense_Mutation p.R304C 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29D-06 11 28080652 28080652 G A KIF18A Missense_Mutation p.A590V 0.21 tolerated(0.08) benign(0.419) TCGA-EE-A29D-06 11 28134888 28134888 C T METTL15 Missense_Mutation p.R3W 0.21 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-EE-A29D-06 11 30902728 30902728 C T DCDC1 Missense_Mutation p.G1734E 0.19 deleterious(0) probably_damaging(0.969) TCGA-EE-A29D-06 11 31805073 31805073 G A ELP4 3'UTR 0.48 TCGA-EE-A29D-06 11 33080581 33080581 A G TCP11L1 Missense_Mutation p.M239V 0.41 tolerated(0.19) benign(0.256) TCGA-EE-A29D-06 11 33565765 33565765 C T KIAA1549L Missense_Mutation p.P589S 0.19 tolerated_low_confidence(0.26) benign(0.007) TCGA-EE-A29D-06 11 35308323 35308323 C T SLC1A2 Missense_Mutation p.G423R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 35747577 35747577 G A TRIM44 Missense_Mutation p.E285K 0.20 deleterious(0) unknown(0) TCGA-EE-A29D-06 11 36595303 36595303 C T RAG1 Missense_Mutation p.S150F 0.27 tolerated_low_confidence(0.09) probably_damaging(0.974) TCGA-EE-A29D-06 11 36596519 36596519 C T RAG1 Silent p.T555T 0.23 TCGA-EE-A29D-06 11 36597316 36597316 A G RAG1 Missense_Mutation p.N821S 0.45 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-EE-A29D-06 11 3700795 3700795 G A NUP98 Missense_Mutation p.H1688Y 0.22 tolerated(0.2) benign(0.118) TCGA-EE-A29D-06 11 3723945 3723945 A G NUP98 Missense_Mutation p.V1087A 0.37 tolerated(0.35) benign(0.017) TCGA-EE-A29D-06 11 379694 379694 C T B4GALNT4 Silent p.I827I 0.18 TCGA-EE-A29D-06 11 40136032 40136032 G A LRRC4C Missense_Mutation p.P604L 0.14 tolerated_low_confidence(0.67) benign(0.017) TCGA-EE-A29D-06 11 40136396 40136396 C T LRRC4C Missense_Mutation p.D483N 0.46 tolerated(0.39) benign(0.003) TCGA-EE-A29D-06 11 40137125 40137125 G A LRRC4C Nonsense_Mutation p.Q240* 0.12 TCGA-EE-A29D-06 11 428123 428123 G A ANO9 Silent p.F433F 0.39 TCGA-EE-A29D-06 11 430393 430393 C T ANO9 Missense_Mutation p.G184R 0.49 deleterious(0) possibly_damaging(0.765) TCGA-EE-A29D-06 11 44228420 44228420 C T EXT2 Missense_Mutation p.P558S 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 4470696 4470696 G A OR52K2 Missense_Mutation p.G43R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 4470843 4470843 C T OR52K2 Missense_Mutation p.R92W 0.23 deleterious(0.02) benign(0.008) TCGA-EE-A29D-06 11 44959777 44959777 C T TP53I11 Missense_Mutation p.G37E 0.35 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 11 45275930 45275930 C T SYT13 Missense_Mutation p.M145I 0.36 tolerated(0.5) benign(0) TCGA-EE-A29D-06 11 4566873 4566873 C T OR52M1 Silent p.L151L 0.40 TCGA-EE-A29D-06 11 45926268 45926268 G A MAPK8IP1 Splice_Site p.X593_splice 0.29 TCGA-EE-A29D-06 11 46564639 46564639 G A AMBRA1 Intron 0.62 TCGA-EE-A29D-06 11 46760877 46760877 G A F2 Silent p.R596R 0.55 TCGA-EE-A29D-06 11 46839876 46839876 G A CKAP5 Missense_Mutation p.A79V 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 46958262 46958262 C T C11orf49 5'Flank 0.56 TCGA-EE-A29D-06 11 47264356 47264356 C T ACP2 Silent p.Q352Q 0.14 TCGA-EE-A29D-06 11 47298352 47298352 C T MADD Missense_Mutation p.P345S 0.34 deleterious(0.04) probably_damaging(1) TCGA-EE-A29D-06 11 47304376 47304376 C T MADD Missense_Mutation p.P573L 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 11 47755579 47755579 C T FNBP4 Missense_Mutation p.E562K 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 11 47827779 47827779 C T NUP160 Silent p.K844K 0.20 TCGA-EE-A29D-06 11 4790355 4790355 G A OR51F1 Missense_Mutation p.R265C 0.20 deleterious(0.01) benign(0.365) TCGA-EE-A29D-06 11 4790629 4790629 C T OR51F1 Missense_Mutation p.M173I 0.25 tolerated(0.11) benign(0.004) TCGA-EE-A29D-06 11 48238450 48238450 T G OR4B1 Missense_Mutation p.L30R 0.55 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A29D-06 11 48238586 48238586 C T OR4B1 Silent p.I75I 0.20 TCGA-EE-A29D-06 11 48238844 48238844 C T OR4B1 Silent p.I161I 0.16 TCGA-EE-A29D-06 11 4825533 4825533 G A OR52R1 Silent p.F26F 0.21 TCGA-EE-A29D-06 11 48285549 48285549 C T OR4X1 Missense_Mutation p.T46I 0.22 deleterious(0.02) benign(0.031) TCGA-EE-A29D-06 11 48285762 48285762 C T OR4X1 Missense_Mutation p.A117V 0.33 deleterious(0) probably_damaging(0.94) TCGA-EE-A29D-06 11 48328046 48328046 C T OR4S1 Missense_Mutation p.S91F 0.20 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A29D-06 11 4842823 4842823 C T OR51F2 Missense_Mutation p.H70Y 0.47 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 11 48510838 48510838 C T OR4A47 Missense_Mutation p.P165L 0.18 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A29D-06 11 48511117 48511117 G A OR4A47 Missense_Mutation p.R258K 0.30 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 11 4928768 4928768 G A OR51A7 Missense_Mutation p.E57K 0.46 deleterious(0.03) benign(0.168) TCGA-EE-A29D-06 11 4929509 4929509 G A OR51A7 Missense_Mutation p.G304R 0.24 tolerated(0.32) benign(0.013) TCGA-EE-A29D-06 11 4936556 4936556 G A OR51G2 Missense_Mutation p.S113F 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 4945021 4945021 G A OR51G1 Silent p.H183H 0.16 TCGA-EE-A29D-06 11 4967664 4967664 G A OR51A4 Missense_Mutation p.L223F 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A29D-06 11 4967853 4967853 G A OR51A4 Missense_Mutation p.P160S 0.28 deleterious(0) probably_damaging(0.973) TCGA-EE-A29D-06 11 49830143 49830143 C T RP11-707M1.1 RNA 0.33 TCGA-EE-A29D-06 11 49831736 49831736 C T RP11-707M1.1 RNA 0.17 TCGA-EE-A29D-06 11 49974230 49974230 G A OR4C13 Missense_Mutation p.E86K 0.26 tolerated_low_confidence(0.1) benign(0.023) TCGA-EE-A29D-06 11 5009489 5009489 C T MMP26 Silent p.F16F 0.19 TCGA-EE-A29D-06 11 5009529 5009529 G A MMP26 Missense_Mutation p.D30N 0.18 deleterious(0.03) possibly_damaging(0.746) TCGA-EE-A29D-06 11 5020377 5020377 C T OR51L1 Silent p.S55S 0.23 TCGA-EE-A29D-06 11 5068652 5068652 G A OR52J3 Silent p.Q299Q 0.23 TCGA-EE-A29D-06 11 5079889 5079889 C T OR52E2 Silent p.T323T 0.45 TCGA-EE-A29D-06 11 51411705 51411705 C T OR4A5 Missense_Mutation p.G231S 0.10 deleterious_low_confidence(0.05) benign(0.001) TCGA-EE-A29D-06 11 51411754 51411754 G A OR4A5 Silent p.S214S 0.11 TCGA-EE-A29D-06 11 51411951 51411951 C T OR4A5 Missense_Mutation p.G149R 0.43 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-EE-A29D-06 11 51411972 51411972 G A OR4A5 Silent p.L142L 0.45 TCGA-EE-A29D-06 11 51412124 51412124 G A OR4A5 Missense_Mutation p.S91F 0.28 deleterious_low_confidence(0.02) benign(0.295) TCGA-EE-A29D-06 11 5142675 5142675 C T OR52A4 RNA 0.30 TCGA-EE-A29D-06 11 51515287 51515287 G A OR4C46 Silent p.E2E 0.20 TCGA-EE-A29D-06 11 51515755 51515755 C T OR4C46 Silent p.I158I 0.38 TCGA-EE-A29D-06 11 5153503 5153503 G A OR52A5 Missense_Mutation p.R124C 0.42 deleterious(0.02) benign(0.165) TCGA-EE-A29D-06 11 5153779 5153779 G A OR52A5 Missense_Mutation p.P32S 0.19 deleterious(0.01) benign(0.373) TCGA-EE-A29D-06 11 5173160 5173160 C T OR52A1 Missense_Mutation p.G147E 0.31 deleterious(0) benign(0.141) TCGA-EE-A29D-06 11 5221857 5221857 C T OR51V1 Missense_Mutation p.G25E 0.19 deleterious(0) probably_damaging(0.931) TCGA-EE-A29D-06 11 5247821 5247821 G A HBB Missense_Mutation p.P101S 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A29D-06 11 5255642 5255642 C T HBD Missense_Mutation p.E8K 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A29D-06 11 5290833 5290833 G A HBE1 Silent p.L56L 0.25 TCGA-EE-A29D-06 11 5322321 5322321 G A OR51B4 Missense_Mutation p.P286S 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A29D-06 11 5344709 5344709 G A OR51B2 Silent p.I273I 0.53 TCGA-EE-A29D-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.43 tolerated(0.65) benign(0.008) TCGA-EE-A29D-06 11 5364465 5364465 G A OR51B5 Missense_Mutation p.S97F 0.17 tolerated(0.16) benign(0.002) TCGA-EE-A29D-06 11 5364668 5364668 G A OR51B5 Silent p.F29F 0.46 TCGA-EE-A29D-06 11 5372845 5372845 A G OR51B6 Missense_Mutation p.I36M 0.41 tolerated(0.08) benign(0.043) TCGA-EE-A29D-06 11 5373381 5373381 C T OR51B6 Missense_Mutation p.S215F 0.21 deleterious(0) possibly_damaging(0.873) TCGA-EE-A29D-06 11 5373574 5373574 C T OR51B6 Silent p.F279F 0.42 TCGA-EE-A29D-06 11 540746 540746 G A LRRC56 Missense_Mutation p.R21Q 0.17 tolerated(0.21) benign(0.037) TCGA-EE-A29D-06 11 540747 540747 G A LRRC56 Silent p.R21R 0.15 TCGA-EE-A29D-06 11 5410717 5410717 C T OR51M1 Missense_Mutation p.P30L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 11 5411319 5411319 G A OR51M1 Missense_Mutation p.G231R 0.24 deleterious(0.01) benign(0.004) TCGA-EE-A29D-06 11 5443499 5443499 G A OR51Q1 Silent p.E23E 0.22 TCGA-EE-A29D-06 11 5461818 5461818 G A OR51I1 Silent p.F309F 0.29 TCGA-EE-A29D-06 11 5462260 5462260 G A OR51I1 Missense_Mutation p.P162L 0.42 tolerated(0.07) benign(0.302) TCGA-EE-A29D-06 11 55032550 55032550 G A TRIM48 Silent p.K73K 0.36 TCGA-EE-A29D-06 11 55038273 55038273 A G TRIM48 3'UTR 0.31 TCGA-EE-A29D-06 11 55063069 55063069 C T TRIM51HP RNA 0.20 TCGA-EE-A29D-06 11 5510223 5510223 C T OR52D1 Missense_Mutation p.S96F 0.41 deleterious(0.02) possibly_damaging(0.83) TCGA-EE-A29D-06 11 5510314 5510314 T C OR52D1 Silent p.Y126Y 0.25 TCGA-EE-A29D-06 11 5510595 5510595 C T OR52D1 Missense_Mutation p.S220F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 5510608 5510608 C T OR52D1 Silent p.I224I 0.23 TCGA-EE-A29D-06 11 55111034 55111034 C T OR4A16 Missense_Mutation p.R120C 0.22 tolerated_low_confidence(0.05) benign(0.082) TCGA-EE-A29D-06 11 55136093 55136093 C T OR4A15 Missense_Mutation p.S245F 0.44 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EE-A29D-06 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.46 tolerated_low_confidence(0.06) benign(0.19) TCGA-EE-A29D-06 11 55136150 55136150 C T OR4A15 Missense_Mutation p.A264V 0.42 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A29D-06 11 551954 551954 G A LRRC56 Missense_Mutation p.R342K 0.16 tolerated(0.11) benign(0.037) TCGA-EE-A29D-06 11 5529724 5529724 G A UBQLN3 Silent p.S355S 0.24 TCGA-EE-A29D-06 11 55322804 55322804 C T OR4C15 Missense_Mutation p.T341I 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 55340394 55340394 C T OR4C16 Missense_Mutation p.P264L 0.39 deleterious(0.03) benign(0.052) TCGA-EE-A29D-06 11 55340395 55340395 C T OR4C16 Silent p.P264P 0.39 TCGA-EE-A29D-06 11 55371798 55371798 C T OR4C11 Missense_Mutation p.D18N 0.20 tolerated(0.44) benign(0.029) TCGA-EE-A29D-06 11 55371809 55371809 C T OR4C11 Missense_Mutation p.G14E 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 11 55418422 55418422 C T OR4S2 Missense_Mutation p.L15F 0.38 deleterious(0.05) benign(0.124) TCGA-EE-A29D-06 11 55433486 55433486 C T OR4C6 Missense_Mutation p.P282S 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.45) TCGA-EE-A29D-06 11 55563235 55563235 C T OR5D14 Silent p.L68L 0.36 TCGA-EE-A29D-06 11 55587954 55587954 C T OR5D18 Silent p.I283I 0.16 TCGA-EE-A29D-06 11 55594723 55594723 C T OR5L2 Missense_Mutation p.A10V 0.45 tolerated(0.13) benign(0.002) TCGA-EE-A29D-06 11 5566080 5566080 G A OR52H1 Missense_Mutation p.S225F 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 55735218 55735218 A T OR10AG1 Nonsense_Mutation p.L241* 0.24 TCGA-EE-A29D-06 11 55798447 55798447 C T OR5AS1 Silent p.L185L 0.43 TCGA-EE-A29D-06 11 558045 558045 C T C11orf35 Intron 0.46 TCGA-EE-A29D-06 11 55861600 55861600 G A OR8I2 Missense_Mutation p.A273T 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 11 55890768 55890768 G A OR8H3 Missense_Mutation p.R307K 0.25 tolerated(1) benign(0.001) TCGA-EE-A29D-06 11 55904475 55904475 G A OR8J3 Silent p.T240T 0.20 TCGA-EE-A29D-06 11 55944167 55944167 C T OR5J2 Missense_Mutation p.A25V 0.43 tolerated(1) benign(0) TCGA-EE-A29D-06 11 55944743 55944743 C T OR5J2 Missense_Mutation p.S217F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 5602771 5602771 C T OR52B6 Missense_Mutation p.A222V 0.20 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A29D-06 11 56058264 56058264 G A OR8H1 Missense_Mutation p.S92F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 56086229 56086229 C T OR8K3 Silent p.Y149Y 0.38 TCGA-EE-A29D-06 11 562279 562279 C T RASSF7 Missense_Mutation p.R109C 0.21 deleterious(0) probably_damaging(0.953) TCGA-EE-A29D-06 11 56409093 56409093 C T OR5AP2 Missense_Mutation p.E275K 0.38 deleterious(0.02) benign(0.033) TCGA-EE-A29D-06 11 5655114 5655114 G A TRIM34 Silent p.E168E 0.23 TCGA-EE-A29D-06 11 56950085 56950085 C T LRRC55 Missense_Mutation p.P240S 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 56954888 56954888 C T LRRC55 Silent p.F320F 0.45 TCGA-EE-A29D-06 11 5730836 5730836 G A TRIM22 Nonsense_Mutation p.W485* 0.14 TCGA-EE-A29D-06 11 57310520 57310520 G A SMTNL1 Silent p.E153E 0.27 TCGA-EE-A29D-06 11 57381809 57381809 G A SERPING1 Missense_Mutation p.D420N 0.46 tolerated(0.52) benign(0.38) TCGA-EE-A29D-06 11 57480207 57480207 G A TMX2 Silent p.V39V 0.22 TCGA-EE-A29D-06 11 5757749 5757749 G A OR56B1 Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(0.28) benign(0.019) TCGA-EE-A29D-06 11 5758290 5758290 G A OR56B1 Missense_Mutation p.E182K 0.38 tolerated(1) benign(0.19) TCGA-EE-A29D-06 11 58034485 58034485 G A OR10W1 Silent p.A282A 0.46 TCGA-EE-A29D-06 11 58125910 58125910 A G OR5B17 Silent p.V211V 0.40 TCGA-EE-A29D-06 11 58189901 58189901 C T OR5B2 Missense_Mutation p.M278I 0.45 tolerated_low_confidence(0.15) benign(0.019) TCGA-EE-A29D-06 11 58190498 58190498 G A OR5B2 Silent p.V79V 0.12 TCGA-EE-A29D-06 11 58207292 58207293 - A OR5B12 Frame_Shift_Ins p.L112Pfs*8 0.36 TCGA-EE-A29D-06 11 58482865 58482865 C T GLYAT Missense_Mutation p.G38E 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29D-06 11 58920891 58920891 G A FAM111A Missense_Mutation p.D584N 0.22 tolerated(0.21) benign(0.098) TCGA-EE-A29D-06 11 59211055 59211055 C T OR5A1 Silent p.I138I 0.19 TCGA-EE-A29D-06 11 59245655 59245655 C T OR4D10 Silent p.F251F 0.26 TCGA-EE-A29D-06 11 59282883 59282883 C T OR4D9 Silent p.L166L 0.47 TCGA-EE-A29D-06 11 59481045 59481045 G A OR10V1 Missense_Mutation p.P92S 0.18 tolerated(0.2) benign(0.009) TCGA-EE-A29D-06 11 6007921 6007921 G A OR52L1 Silent p.F80F 0.17 TCGA-EE-A29D-06 11 60229883 60229883 C T MS4A1 Silent p.F12F 0.54 TCGA-EE-A29D-06 11 6048009 6048009 C T OR56A1 Missense_Mutation p.G309E 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 11 60637179 60637179 C T ZP1 Missense_Mutation p.S163F 0.30 deleterious(0.01) benign(0.028) TCGA-EE-A29D-06 11 608893 608893 C T PHRF1 Missense_Mutation p.P1145L 0.37 tolerated(0.65) benign(0) TCGA-EE-A29D-06 11 61026612 61026612 G A VWCE Silent p.L801L 0.15 TCGA-EE-A29D-06 11 61048507 61048507 G A VWCE Missense_Mutation p.P330S 0.47 tolerated(0.15) benign(0.014) TCGA-EE-A29D-06 11 61135217 61135217 C T TMEM138 Intron 0.16 TCGA-EE-A29D-06 11 61205220 61205220 C T SDHAF2 Missense_Mutation p.P54S 0.21 tolerated(0.12) probably_damaging(0.949) TCGA-EE-A29D-06 11 61205221 61205221 C T SDHAF2 Missense_Mutation p.P54L 0.21 tolerated(0.06) possibly_damaging(0.804) TCGA-EE-A29D-06 11 61249313 61249313 C T PPP1R32 Missense_Mutation p.S11F 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 61253371 61253371 C T PPP1R32 Silent p.L225L 0.46 TCGA-EE-A29D-06 11 618056 618056 G A CDHR5 Silent p.G672G 0.14 TCGA-EE-A29D-06 11 6190745 6190745 G A OR52B2 Missense_Mutation p.P271L 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 11 6191490 6191490 C T OR52B2 Missense_Mutation p.E23K 0.36 deleterious(0.01) benign(0.414) TCGA-EE-A29D-06 11 62065014 62065014 C T SCGB1D4 Missense_Mutation p.A58T 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 62065102 62065102 A T SCGB1D4 Silent p.A28A 0.25 TCGA-EE-A29D-06 11 62284634 62284634 G A AHNAK Missense_Mutation p.S5752F 0.56 probably_damaging(0.993) TCGA-EE-A29D-06 11 62287212 62287212 C T AHNAK Missense_Mutation p.E4893K 0.47 benign(0.127) TCGA-EE-A29D-06 11 62287916 62287916 G A AHNAK Missense_Mutation p.P4658L 0.22 probably_damaging(0.913) TCGA-EE-A29D-06 11 62289083 62289083 G A AHNAK Missense_Mutation p.P4269L 0.45 probably_damaging(0.999) TCGA-EE-A29D-06 11 62762117 62762117 G A SLC22A8 Silent p.F371F 0.10 TCGA-EE-A29D-06 11 62766404 62766404 G A SLC22A8 Silent p.F250F 0.38 TCGA-EE-A29D-06 11 6290975 6290975 C T CCKBR Silent p.I76I 0.19 TCGA-EE-A29D-06 11 63065136 63065136 G A SLC22A10 Missense_Mutation p.R256Q 0.26 tolerated(0.21) possibly_damaging(0.547) TCGA-EE-A29D-06 11 63283053 63283053 G A LGALS12 Silent p.R245R 0.18 TCGA-EE-A29D-06 11 63283741 63283741 G A LGALS12 Missense_Mutation p.G297E 0.14 tolerated(0.88) benign(0.073) TCGA-EE-A29D-06 11 63313646 63313646 G A RARRES3 Missense_Mutation p.G138D 0.42 deleterious(0.01) benign(0.133) TCGA-EE-A29D-06 11 63487362 63487362 C T RTN3 Missense_Mutation p.S463F 0.48 deleterious(0) possibly_damaging(0.569) TCGA-EE-A29D-06 11 63487368 63487368 T G RTN3 Missense_Mutation p.V465G 0.17 tolerated(0.21) benign(0.006) TCGA-EE-A29D-06 11 63884760 63884760 G A FLRT1 Missense_Mutation p.D341N 0.43 tolerated(0.19) benign(0.049) TCGA-EE-A29D-06 11 64023201 64023201 C T PLCB3 Silent p.S202S 0.21 TCGA-EE-A29D-06 11 64030187 64030187 C T PLCB3 Silent p.L754L 0.22 TCGA-EE-A29D-06 11 64031561 64031561 G T PLCB3 Missense_Mutation p.A877S 0.19 tolerated(0.07) benign(0.214) TCGA-EE-A29D-06 11 64127960 64127960 G A RPS6KA4 Missense_Mutation p.G120S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 64367874 64367874 G A SLC22A12 Missense_Mutation p.G441R 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 11 64563863 64563863 C T MAP4K2 Splice_Site p.X545_splice 0.24 TCGA-EE-A29D-06 11 64863934 64863934 A G VPS51 Missense_Mutation p.E71G 0.31 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A29D-06 11 64875963 64875963 C T VPS51 Silent p.F340F 0.28 TCGA-EE-A29D-06 11 64938924 64938924 C T SPDYC Silent p.L51L 0.36 TCGA-EE-A29D-06 11 6502591 6502591 G A ARFIP2 5'Flank 0.20 TCGA-EE-A29D-06 11 65487831 65487831 G C RNASEH2C Missense_Mutation p.P77R 0.10 deleterious(0.05) benign(0.114) TCGA-EE-A29D-06 11 65780337 65780337 G A CST6 Missense_Mutation p.G94E 0.33 tolerated(1) benign(0.094) TCGA-EE-A29D-06 11 65784602 65784602 C T CATSPER1 Missense_Mutation p.V749M 0.25 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 11 65793102 65793102 T A CATSPER1 Missense_Mutation p.H250L 0.35 tolerated(0.45) benign(0) TCGA-EE-A29D-06 11 65793544 65793544 C T CATSPER1 Missense_Mutation p.G103S 0.36 tolerated(0.22) benign(0.028) TCGA-EE-A29D-06 11 65824369 65824369 C T SF3B2 Missense_Mutation p.P204S 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-EE-A29D-06 11 65988645 65988645 C T PACS1 Missense_Mutation p.S407L 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A29D-06 11 66052985 66052985 G A YIF1A Silent p.L170L 0.20 TCGA-EE-A29D-06 11 66099956 66099956 C T RIN1 Missense_Mutation p.E715K 0.20 tolerated_low_confidence(0.58) benign(0.006) TCGA-EE-A29D-06 11 66100171 66100171 G A RIN1 Missense_Mutation p.T643I 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 11 66191536 66191536 G A NPAS4 Missense_Mutation p.R392Q 0.45 tolerated(0.8) benign(0) TCGA-EE-A29D-06 11 66460725 66460725 C T SPTBN2 Missense_Mutation p.D1596N 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29D-06 11 66468364 66468364 T C SPTBN2 Missense_Mutation p.D1069G 0.20 tolerated(0.26) benign(0.001) TCGA-EE-A29D-06 11 66475056 66475056 G A SPTBN2 Silent p.L528L 0.19 TCGA-EE-A29D-06 11 66812087 66812087 C T SYT12 Silent p.I287I 0.52 TCGA-EE-A29D-06 11 67223038 67223038 C T CABP4 Silent p.L48L 0.21 TCGA-EE-A29D-06 11 67223192 67223192 C T CABP4 Missense_Mutation p.R100C 0.29 deleterious(0.03) benign(0.027) TCGA-EE-A29D-06 11 67225861 67225861 G A CABP4 Missense_Mutation p.G224E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 67257813 67257813 C T AIP Silent p.I224I 0.27 TCGA-EE-A29D-06 11 67257814 67257814 C T AIP Nonsense_Mutation p.Q225* 0.27 TCGA-EE-A29D-06 11 67433000 67433000 G A ALDH3B2 Silent p.F154F 0.20 TCGA-EE-A29D-06 11 68029501 68029501 G A C11orf24 Missense_Mutation p.S321F 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A29D-06 11 6806947 6806947 C T OR2AG1 Missense_Mutation p.H227Y 0.43 deleterious(0.04) benign(0.021) TCGA-EE-A29D-06 11 68191088 68191088 G A LRP5 Silent p.L1053L 0.24 TCGA-EE-A29D-06 11 68475844 68475844 C T MTL5 Missense_Mutation p.E487K 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 68552354 68552354 C T CPT1A Silent p.Q364Q 0.28 TCGA-EE-A29D-06 11 68566742 68566742 G A CPT1A Missense_Mutation p.L213F 0.16 deleterious(0.03) possibly_damaging(0.824) TCGA-EE-A29D-06 11 6867366 6867366 C T OR10A5 Silent p.F151F 0.46 TCGA-EE-A29D-06 11 68704546 68704546 G A IGHMBP2 Silent p.K866K 0.18 TCGA-EE-A29D-06 11 6891644 6891644 G A OR10A2 Missense_Mutation p.G220E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 6891737 6891737 C T OR10A2 Missense_Mutation p.S251L 0.46 deleterious(0) probably_damaging(0.954) TCGA-EE-A29D-06 11 6898226 6898226 G A OR10A4 Silent p.L116L 0.18 TCGA-EE-A29D-06 11 6913368 6913368 G A OR2D2 Missense_Mutation p.R122C 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A29D-06 11 7021886 7021886 G A ZNF214 Missense_Mutation p.S343L 0.23 deleterious(0) possibly_damaging(0.522) TCGA-EE-A29D-06 11 7022597 7022597 C T ZNF214 Nonsense_Mutation p.W106* 0.22 TCGA-EE-A29D-06 11 7022746 7022746 G A ZNF214 Silent p.F56F 0.21 TCGA-EE-A29D-06 11 7059797 7059797 A C NLRP14 Intron 0.49 TCGA-EE-A29D-06 11 7064763 7064763 C T NLRP14 Silent p.N502N 0.16 TCGA-EE-A29D-06 11 7064875 7064875 C T NLRP14 Nonsense_Mutation p.R540* 0.54 TCGA-EE-A29D-06 11 7111489 7111489 G A RBMXL2 Missense_Mutation p.G380R 0.25 deleterious(0) unknown(0) TCGA-EE-A29D-06 11 71155081 71155081 C T DHCR7 Silent p.T93T 0.23 TCGA-EE-A29D-06 11 71212393 71212393 G A NADSYN1 Missense_Mutation p.D706N 0.69 tolerated_low_confidence(0.05) benign(0.265) TCGA-EE-A29D-06 11 71276950 71276950 C T KRTAP5-10 Missense_Mutation p.S106F 0.45 unknown(0) TCGA-EE-A29D-06 11 71850171 71850171 A G FOLR3 Missense_Mutation p.N154S 0.22 deleterious(0) probably_damaging(0.947) TCGA-EE-A29D-06 11 71850849 71850849 C T FOLR3 Missense_Mutation p.P280S 0.49 tolerated(0.41) benign(0.053) TCGA-EE-A29D-06 11 72945193 72945193 C T P2RY2 5'UTR 0.20 TCGA-EE-A29D-06 11 73021133 73021133 G A ARHGEF17 Missense_Mutation p.E484K 0.44 tolerated_low_confidence(0.06) benign(0.005) TCGA-EE-A29D-06 11 73070878 73070878 G A ARHGEF17 Splice_Site p.X1363_splice 0.14 TCGA-EE-A29D-06 11 7334879 7334879 G A SYT9 Missense_Mutation p.D251N 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 11 73950200 73950200 G A PPME1 Missense_Mutation p.E245K 0.12 tolerated(0.84) benign(0.007) TCGA-EE-A29D-06 11 74716749 74716749 A G NEU3 Missense_Mutation p.I200V 0.40 tolerated(0.56) benign(0.036) TCGA-EE-A29D-06 11 75298411 75298411 G A MAP6 Missense_Mutation p.S712F 0.21 tolerated_low_confidence(0.15) benign(0.003) TCGA-EE-A29D-06 11 75438510 75438510 C T MOGAT2 Missense_Mutation p.R101W 0.40 deleterious(0) benign(0.024) TCGA-EE-A29D-06 11 76900507 76900507 T C MYO7A Missense_Mutation p.F1208L 0.19 tolerated(0.12) possibly_damaging(0.508) TCGA-EE-A29D-06 11 76924925 76924925 C T MYO7A Silent p.P2153P 0.27 TCGA-EE-A29D-06 11 76956394 76956394 G A GDPD4 Missense_Mutation p.P340S 0.17 tolerated(0.06) possibly_damaging(0.858) TCGA-EE-A29D-06 11 7720305 7720305 C T OVCH2 Missense_Mutation p.S306N 0.64 tolerated(0.12) benign(0.015) TCGA-EE-A29D-06 11 77413025 77413025 C T RSF1 Missense_Mutation p.E417K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-EE-A29D-06 11 77458147 77458147 C T RSF1 Nonsense_Mutation p.W102* 0.16 TCGA-EE-A29D-06 11 77885238 77885238 C T KCTD21 Silent p.Q121Q 0.24 TCGA-EE-A29D-06 11 78380432 78380432 G A TENM4 Missense_Mutation p.P2320S 0.49 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 11 7846844 7846844 G A OR5P3 Silent p.L226L 0.25 TCGA-EE-A29D-06 11 788242 788242 C T CEND1 Missense_Mutation p.G112E 0.20 tolerated_low_confidence(0.09) benign(0.277) TCGA-EE-A29D-06 11 7949407 7949407 G A OR10A6 Missense_Mutation p.P268L 0.16 tolerated(0.06) benign(0.053) TCGA-EE-A29D-06 11 8008845 8008845 C T EIF3F 5'UTR 0.40 TCGA-EE-A29D-06 11 8008883 8008883 C T EIF3F 5'UTR 0.46 TCGA-EE-A29D-06 11 8122132 8122132 C T TUB Missense_Mutation p.S455F 0.20 deleterious(0) possibly_damaging(0.799) TCGA-EE-A29D-06 11 8148274 8148274 C T RIC3 Missense_Mutation p.G201E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 82536019 82536019 G A PRCP Missense_Mutation p.R495C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 11 83497758 83497758 C T DLG2 Silent p.T600T 0.22 TCGA-EE-A29D-06 11 83674049 83674049 C T DLG2 Missense_Mutation p.E407K 0.47 tolerated(0.1) benign(0.39) TCGA-EE-A29D-06 11 8496557 8496557 C T STK33 5'UTR 0.31 TCGA-EE-A29D-06 11 85375667 85375667 C T CREBZF Missense_Mutation p.E85K 0.39 tolerated_low_confidence(0.06) probably_damaging(0.952) TCGA-EE-A29D-06 11 85406233 85406233 T C SYTL2 3'UTR 0.40 TCGA-EE-A29D-06 11 86119203 86119203 G A CCDC81 Missense_Mutation p.R335Q 0.29 tolerated(0.13) benign(0.128) TCGA-EE-A29D-06 11 87032350 87032350 C T TMEM135 Missense_Mutation p.P451L 0.25 deleterious_low_confidence(0.01) benign(0.22) TCGA-EE-A29D-06 11 8942929 8942929 C T C11orf16 Silent p.G446G 0.22 TCGA-EE-A29D-06 11 8942930 8942930 C T C11orf16 Missense_Mutation p.G446E 0.22 tolerated_low_confidence(1) benign(0) TCGA-EE-A29D-06 11 89883650 89883650 G A NAALAD2 Missense_Mutation p.G162R 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 11 89944431 89944431 C T CHORDC1 Missense_Mutation p.A129T 0.35 tolerated(0.06) benign(0.213) TCGA-EE-A29D-06 11 92534320 92534320 C T FAT3 Missense_Mutation p.S2714F 0.21 benign(0.067) TCGA-EE-A29D-06 11 92534801 92534801 G A FAT3 Nonsense_Mutation p.W2874* 0.21 TCGA-EE-A29D-06 11 92703056 92703056 C T MTNR1B Silent p.V55V 0.47 TCGA-EE-A29D-06 11 9305015 9305015 G A TMEM41B Silent p.L278L 0.39 TCGA-EE-A29D-06 11 93097404 93097404 C T CCDC67 Missense_Mutation p.P126S 0.70 tolerated(0.41) benign(0.02) TCGA-EE-A29D-06 11 94040632 94040632 C T FOLR4 Missense_Mutation p.S169F 0.53 deleterious(0.04) benign(0.248) TCGA-EE-A29D-06 11 94759406 94759406 C T KDM4E Missense_Mutation p.P229S 0.29 deleterious(0.02) possibly_damaging(0.619) TCGA-EE-A29D-06 11 94759407 94759407 C T KDM4E Missense_Mutation p.P229L 0.29 deleterious(0.04) possibly_damaging(0.561) TCGA-EE-A29D-06 11 94861922 94861922 C T ENDOD1 Missense_Mutation p.P228S 0.30 tolerated(0.07) probably_damaging(1) TCGA-EE-A29D-06 11 9492905 9492905 C T ZNF143 Missense_Mutation p.P17L 0.24 tolerated_low_confidence(0.06) benign(0.046) TCGA-EE-A29D-06 11 99690287 99690287 C T CNTN5 Missense_Mutation p.S23F 0.15 deleterious_low_confidence(0) benign(0.024) TCGA-EE-A29D-06 12 100166729 100166729 C T ANKS1B Missense_Mutation p.E367K 0.86 deleterious(0.01) benign(0.047) TCGA-EE-A29D-06 12 101333182 101333182 C T ANO4 Silent p.L49L 0.89 TCGA-EE-A29D-06 12 101413904 101413904 G A ANO4 Missense_Mutation p.G241E 0.92 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A29D-06 12 101504308 101504308 C T ANO4 Missense_Mutation p.P724L 0.91 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A29D-06 12 101763609 101763609 C T UTP20 Silent p.D2165D 0.86 TCGA-EE-A29D-06 12 102315121 102315121 C T DRAM1 3'UTR 0.89 TCGA-EE-A29D-06 12 10233922 10233922 G A CLEC1A Missense_Mutation p.S102F 0.30 tolerated(0.19) probably_damaging(0.975) TCGA-EE-A29D-06 12 103988288 103988288 G A STAB2 Missense_Mutation p.E111K 0.81 deleterious(0.04) benign(0.017) TCGA-EE-A29D-06 12 104111584 104111584 G A STAB2 Missense_Mutation p.G1550R 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 10462062 10462062 G A KLRD1 Missense_Mutation p.G28E 0.21 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 12 10531209 10531209 C T KLRK1 Missense_Mutation p.A125T 0.53 deleterious(0.04) benign(0.125) TCGA-EE-A29D-06 12 10586473 10586473 C T KLRC2 Missense_Mutation p.E134K 0.41 deleterious(0.03) possibly_damaging(0.872) TCGA-EE-A29D-06 12 106460735 106460735 G A NUAK1 Nonsense_Mutation p.Q611* 0.43 TCGA-EE-A29D-06 12 108685623 108685623 G A CMKLR1 Missense_Mutation p.L373F 0.25 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EE-A29D-06 12 108985661 108985661 C T TMEM119 Missense_Mutation p.D167N 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A29D-06 12 109494566 109494566 C T USP30 Missense_Mutation p.P55S 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 12 109623478 109623478 C T ACACB Missense_Mutation p.P638L 0.16 tolerated(0.12) benign(0.003) TCGA-EE-A29D-06 12 109629451 109629451 C T ACACB Silent p.I726I 0.14 TCGA-EE-A29D-06 12 109631489 109631489 C T ACACB Silent p.L812L 0.19 TCGA-EE-A29D-06 12 10978303 10978303 G A TAS2R10 Missense_Mutation p.S189F 0.15 tolerated(0.1) benign(0.16) TCGA-EE-A29D-06 12 10978391 10978391 T C TAS2R10 Missense_Mutation p.T160A 0.16 tolerated(0.17) benign(0.02) TCGA-EE-A29D-06 12 109862585 109862585 G A MYO1H Silent p.R543R 0.14 TCGA-EE-A29D-06 12 109865368 109865368 G A MYO1H Silent p.R626R 0.40 TCGA-EE-A29D-06 12 11034904 11034904 C T PRH1 Missense_Mutation p.G144E 0.17 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 12 11035026 11035026 A C PRH1 Silent p.P103P 0.33 TCGA-EE-A29D-06 12 11061021 11061021 G A TAS2R13 Missense_Mutation p.L293F 0.17 deleterious(0.04) benign(0.35) TCGA-EE-A29D-06 12 11061756 11061756 G A TAS2R13 Missense_Mutation p.L48F 0.23 deleterious(0.05) possibly_damaging(0.744) TCGA-EE-A29D-06 12 110891655 110891655 G A GPN3 Nonsense_Mutation p.R268* 0.16 TCGA-EE-A29D-06 12 111057720 111057720 G A TCTN1 Silent p.V100V 0.20 TCGA-EE-A29D-06 12 11139091 11139091 C T TAS2R50 Silent p.R123R 0.42 TCGA-EE-A29D-06 12 111785666 111785666 C T CUX2 Missense_Mutation p.P1333L 0.34 tolerated_low_confidence(0.18) benign(0.003) TCGA-EE-A29D-06 12 112230430 112230430 C T ALDH2 Silent p.F309F 0.29 TCGA-EE-A29D-06 12 112485485 112485485 A C NAA25 Missense_Mutation p.W664G 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 12 113344996 113344996 A G OAS1 Missense_Mutation p.Y51C 0.42 deleterious(0.04) possibly_damaging(0.77) TCGA-EE-A29D-06 12 113400489 113400489 C T OAS3 Silent p.A622A 0.16 TCGA-EE-A29D-06 12 113424969 113424969 G A OAS2 Missense_Mutation p.G102R 0.20 tolerated(1) benign(0.002) TCGA-EE-A29D-06 12 113442792 113442792 C T OAS2 Silent p.L411L 0.39 TCGA-EE-A29D-06 12 113445716 113445716 G A OAS2 Silent p.R621R 0.22 TCGA-EE-A29D-06 12 113758212 113758212 G A SLC8B1 Silent p.I206I 0.24 TCGA-EE-A29D-06 12 11420684 11420684 G A PRB3 Missense_Mutation p.P167S 0.26 deleterious(0.02) unknown(0) TCGA-EE-A29D-06 12 11420926 11420926 C T PRB3 Missense_Mutation p.G86E 0.45 deleterious(0) unknown(0) TCGA-EE-A29D-06 12 11461597 11461597 C T PRB4 Missense_Mutation p.G107E 0.16 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 12 114793460 114793460 G A TBX5 Silent p.S478S 0.19 TCGA-EE-A29D-06 12 114839701 114839701 G A TBX5 Missense_Mutation p.L58F 0.19 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 12 11506189 11506189 C T PRB1 Missense_Mutation p.G150E 0.18 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A29D-06 12 11506223 11506223 G A PRB1 Nonsense_Mutation p.Q139* 0.21 TCGA-EE-A29D-06 12 115112504 115112504 G T TBX3 Silent p.V412V 0.19 TCGA-EE-A29D-06 12 115115394 115115394 C T TBX3 Missense_Mutation p.R311K 0.50 deleterious(0.05) possibly_damaging(0.593) TCGA-EE-A29D-06 12 11545982 11545982 T A PRB2 Nonsense_Mutation p.K344* 0.42 TCGA-EE-A29D-06 12 11545988 11545988 G A PRB2 Missense_Mutation p.P342S 0.44 tolerated(0.8) unknown(0) TCGA-EE-A29D-06 12 11546405 11546405 C T PRB2 Missense_Mutation p.G203R 0.19 tolerated(0.06) unknown(0) TCGA-EE-A29D-06 12 11546689 11546689 G A PRB2 Missense_Mutation p.S108F 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 12 116424210 116424210 G A MED13L Missense_Mutation p.S1400F 0.53 deleterious(0) unknown(0) TCGA-EE-A29D-06 12 117693741 117693741 C T NOS1 Missense_Mutation p.R878K 0.47 tolerated(0.67) benign(0.229) TCGA-EE-A29D-06 12 117696834 117696834 C T NOS1 Silent p.G823G 0.17 TCGA-EE-A29D-06 12 117768530 117768530 C T NOS1 Silent p.G115G 0.25 TCGA-EE-A29D-06 12 117768566 117768566 G A NOS1 Silent p.F103F 0.23 TCGA-EE-A29D-06 12 117768922 117768922 C T NOS1 5'Flank 0.50 TCGA-EE-A29D-06 12 117907478 117907478 C T KSR2 Nonsense_Mutation p.W945* 0.12 TCGA-EE-A29D-06 12 117923411 117923411 C T KSR2 Missense_Mutation p.E769K 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 12 117996324 117996324 G A KSR2 Silent p.I460I 0.18 TCGA-EE-A29D-06 12 118198915 118198915 C T KSR2 Missense_Mutation p.R296Q 0.26 deleterious(0) benign(0.2) TCGA-EE-A29D-06 12 118199270 118199270 C T KSR2 Missense_Mutation p.E178K 0.22 tolerated(0.06) benign(0.164) TCGA-EE-A29D-06 12 118598041 118598041 T C TAOK3 Silent p.L754L 0.19 TCGA-EE-A29D-06 12 120586088 120586088 G A GCN1L1 Missense_Mutation p.P1537S 0.29 probably_damaging(0.997) TCGA-EE-A29D-06 12 120652729 120652729 A T PXN Missense_Mutation p.S407T 0.17 tolerated(0.56) benign(0.108) TCGA-EE-A29D-06 12 121206221 121206221 G A SPPL3 Missense_Mutation p.P227L 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 12 121206840 121206840 G A SPPL3 Silent p.V175V 0.28 TCGA-EE-A29D-06 12 121691199 121691199 G A CAMKK2 Silent p.I328I 0.20 TCGA-EE-A29D-06 12 121758211 121758211 G A ANAPC5 Missense_Mutation p.P498S 0.22 deleterious(0.01) possibly_damaging(0.543) TCGA-EE-A29D-06 12 122658723 122658723 G A IL31 5'UTR 0.27 TCGA-EE-A29D-06 12 122825462 122825462 T C CLIP1 Silent p.T763T 0.49 TCGA-EE-A29D-06 12 122839846 122839846 G A CLIP1 Missense_Mutation p.S340F 0.45 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 12 123011506 123011506 G A RSRC2 5'UTR 0.48 TCGA-EE-A29D-06 12 123482006 123482006 C T PITPNM2 Silent p.K446K 0.26 TCGA-EE-A29D-06 12 123782685 123782685 T A SBNO1 Silent p.L1293L 0.31 TCGA-EE-A29D-06 12 123798171 123798171 A G SBNO1 Silent p.F1072F 0.20 TCGA-EE-A29D-06 12 124297749 124297749 C T DNAH10 Silent p.C943C 0.11 TCGA-EE-A29D-06 12 124315152 124315152 C T DNAH10 Missense_Mutation p.T1366I 0.42 probably_damaging(0.999) TCGA-EE-A29D-06 12 124315153 124315153 C T DNAH10 Silent p.T1366T 0.42 TCGA-EE-A29D-06 12 124323028 124323028 C T DNAH10 Missense_Mutation p.P1525L 0.34 benign(0.329) TCGA-EE-A29D-06 12 124352569 124352569 G A DNAH10 Silent p.E2356E 0.25 TCGA-EE-A29D-06 12 124409699 124409699 G A DNAH10 Missense_Mutation p.D3839N 0.47 probably_damaging(0.999) TCGA-EE-A29D-06 12 124421907 124421907 G A CCDC92 Missense_Mutation p.L232F 0.29 tolerated(0.35) benign(0.081) TCGA-EE-A29D-06 12 125397827 125397827 G A UBC Missense_Mutation p.T164I 0.12 tolerated(0.13) possibly_damaging(0.879) TCGA-EE-A29D-06 12 125398123 125398123 G A UBC Silent p.S65S 0.44 TCGA-EE-A29D-06 12 125900150 125900150 G A TMEM132B Missense_Mutation p.E340K 0.44 tolerated(0.05) benign(0.329) TCGA-EE-A29D-06 12 126004123 126004123 G A TMEM132B Silent p.E410E 0.18 TCGA-EE-A29D-06 12 126004129 126004129 C T TMEM132B Silent p.F412F 0.21 TCGA-EE-A29D-06 12 129278818 129278818 T C SLC15A4 Missense_Mutation p.I553V 0.19 tolerated(1) benign(0.002) TCGA-EE-A29D-06 12 129563246 129563246 T C TMEM132D Missense_Mutation p.I650V 0.20 tolerated(0.1) benign(0.421) TCGA-EE-A29D-06 12 12976239 12976239 C T DDX47 Missense_Mutation p.P246S 0.22 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A29D-06 12 130184762 130184762 C T TMEM132D Silent p.G187G 0.38 TCGA-EE-A29D-06 12 130185060 130185060 C T TMEM132D Missense_Mutation p.R88K 0.20 tolerated(0.71) benign(0) TCGA-EE-A29D-06 12 130648036 130648036 G A FZD10 Silent p.K183K 0.24 TCGA-EE-A29D-06 12 130649062 130649062 C T FZD10 Silent p.S525S 0.20 TCGA-EE-A29D-06 12 130927194 130927194 C T RIMBP2 Missense_Mutation p.D218N 0.51 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 12 130929739 130929739 G A RIMBP2 Silent p.V202V 0.36 TCGA-EE-A29D-06 12 13243455 13243455 C T GSG1 Missense_Mutation p.E116K 0.12 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A29D-06 12 13243456 13243456 C T GSG1 Silent p.E115E 0.12 TCGA-EE-A29D-06 12 133254194 133254194 G A POLE Silent p.I230I 0.55 TCGA-EE-A29D-06 12 133434021 133434021 G A CHFR Missense_Mutation p.L358F 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29D-06 12 133434031 133434031 G A CHFR Silent p.I354I 0.46 TCGA-EE-A29D-06 12 133683172 133683172 C T ZNF140 Missense_Mutation p.L437F 0.46 tolerated(0.05) benign(0.091) TCGA-EE-A29D-06 12 13716761 13716761 G A GRIN2B Silent p.F1137F 0.19 TCGA-EE-A29D-06 12 13761720 13761720 G A GRIN2B Silent p.L609L 0.19 TCGA-EE-A29D-06 12 13828697 13828697 C T GRIN2B Silent p.K369K 0.17 TCGA-EE-A29D-06 12 14781588 14781588 C T GUCY2C Silent p.K747K 0.18 TCGA-EE-A29D-06 12 14834368 14834368 C T GUCY2C Missense_Mutation p.E219K 0.15 tolerated(0.85) benign(0.001) TCGA-EE-A29D-06 12 15813623 15813623 G A EPS8 Nonsense_Mutation p.Q288* 0.27 TCGA-EE-A29D-06 12 16507169 16507169 C T MGST1 5'UTR 0.17 TCGA-EE-A29D-06 12 16713427 16713427 G A LMO3 Silent p.I106I 0.55 TCGA-EE-A29D-06 12 18234107 18234107 C T RERGL 3'UTR 0.12 TCGA-EE-A29D-06 12 18234137 18234137 C T RERGL Silent p.R202R 0.25 TCGA-EE-A29D-06 12 18234177 18234177 G A RERGL Missense_Mutation p.S189L 0.39 deleterious(0.01) probably_damaging(0.926) TCGA-EE-A29D-06 12 18435502 18435502 G A PIK3C2G Missense_Mutation p.E163K 0.20 tolerated_low_confidence(0.28) benign(0.006) TCGA-EE-A29D-06 12 18576937 18576937 C T PIK3C2G Missense_Mutation p.S782F 0.17 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 12 18691166 18691166 C T PIK3C2G Nonsense_Mutation p.Q1093* 0.22 TCGA-EE-A29D-06 12 18849183 18849183 G A PLCZ1 Missense_Mutation p.H398Y 0.45 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A29D-06 12 18891276 18891276 G A CAPZA3 Missense_Mutation p.G25E 0.16 tolerated(0.09) probably_damaging(0.973) TCGA-EE-A29D-06 12 18891277 18891277 G A CAPZA3 Silent p.G25G 0.16 TCGA-EE-A29D-06 12 18891712 18891712 G A CAPZA3 Nonsense_Mutation p.W170* 0.50 TCGA-EE-A29D-06 12 1994041 1994041 C T CACNA2D4 Missense_Mutation p.E389K 0.26 tolerated(0.31) benign(0.042) TCGA-EE-A29D-06 12 20874853 20874853 G A SLCO1C1 Silent p.K297K 0.22 TCGA-EE-A29D-06 12 21032466 21032466 C T SLCO1B3 Missense_Mutation p.S411L 0.22 tolerated(0.65) benign(0.013) TCGA-EE-A29D-06 12 21032478 21032478 C T SLCO1B3 Missense_Mutation p.S415L 0.22 tolerated(0.07) benign(0.052) TCGA-EE-A29D-06 12 21445169 21445169 G A SLCO1A2 Silent p.F513F 0.14 TCGA-EE-A29D-06 12 22001165 22001165 G A ABCC9 Nonsense_Mutation p.Q929* 0.43 TCGA-EE-A29D-06 12 25242563 25242563 C T LRMP Missense_Mutation p.P130L 0.54 deleterious(0.02) benign(0.345) TCGA-EE-A29D-06 12 26218119 26218122 GATC ATT RASSF8 Frame_Shift_Del p.I265Ffs*46 0.27 TCGA-EE-A29D-06 12 26277799 26277799 G A BHLHE41 5'UTR 0.26 TCGA-EE-A29D-06 12 26714877 26714877 G A ITPR2 Missense_Mutation p.R1547C 0.14 deleterious(0) possibly_damaging(0.847) TCGA-EE-A29D-06 12 2706434 2706434 C T CACNA1C Silent p.F944F 0.49 TCGA-EE-A29D-06 12 2717743 2717743 G A CACNA1C Silent p.E1161E 0.18 TCGA-EE-A29D-06 12 2764357 2764357 G A CACNA1C Silent p.R1443R 0.16 TCGA-EE-A29D-06 12 27799045 27799045 A T PPFIBP1 Silent p.A107A 0.33 TCGA-EE-A29D-06 12 2933306 2933306 C T ITFG2 Missense_Mutation p.H431Y 0.17 tolerated_low_confidence(0.35) benign(0.002) TCGA-EE-A29D-06 12 2983234 2983234 G A FOXM1 Silent p.T137T 0.37 TCGA-EE-A29D-06 12 2983235 2983235 G A FOXM1 Missense_Mutation p.T137I 0.36 tolerated(0.71) benign(0.002) TCGA-EE-A29D-06 12 29920847 29920847 G A TMTC1 Missense_Mutation p.P155L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 2997420 2997420 C T RHNO1 Missense_Mutation p.P171L 0.55 deleterious(0) possibly_damaging(0.687) TCGA-EE-A29D-06 12 31552610 31552610 C T DENND5B Missense_Mutation p.E1016K 0.23 deleterious(0) probably_damaging(0.911) TCGA-EE-A29D-06 12 32136356 32136356 G A KIAA1551 Missense_Mutation p.A823T 0.18 tolerated(0.45) benign(0.007) TCGA-EE-A29D-06 12 32137751 32137751 C T KIAA1551 Missense_Mutation p.P1288S 0.53 tolerated(1) benign(0.009) TCGA-EE-A29D-06 12 32491824 32491824 C T BICD1 Missense_Mutation p.S892L 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.549) TCGA-EE-A29D-06 12 32974395 32974395 G A PKP2 Silent p.S680S 0.29 TCGA-EE-A29D-06 12 32975518 32975518 C T PKP2 Silent p.L618L 0.24 TCGA-EE-A29D-06 12 32996150 32996150 C T PKP2 Silent p.T492T 0.62 TCGA-EE-A29D-06 12 33592344 33592344 G A SYT10 Silent p.F38F 0.45 TCGA-EE-A29D-06 12 344305 344305 C T SLC6A13 Missense_Mutation p.G261E 0.22 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 12 3649784 3649784 C T PRMT8 Missense_Mutation p.P30S 0.35 tolerated_low_confidence(0.14) benign(0.001) TCGA-EE-A29D-06 12 40012487 40012487 C T ABCD2 Missense_Mutation p.G311R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 40643657 40643657 G A LRRK2 Missense_Mutation p.E290K 0.31 tolerated(0.57) benign(0.009) TCGA-EE-A29D-06 12 42768706 42768706 C A PPHLN1 Missense_Mutation p.S114Y 0.45 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A29D-06 12 44605131 44605131 C T TMEM117 Missense_Mutation p.A190V 0.18 tolerated(0.29) benign(0.086) TCGA-EE-A29D-06 12 4479545 4479545 G A FGF23 Silent p.G240G 0.22 TCGA-EE-A29D-06 12 4479941 4479941 G A FGF23 Silent p.F108F 0.25 TCGA-EE-A29D-06 12 46601390 46601390 C T SLC38A1 Missense_Mutation p.E135K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 12 4736475 4736475 G T AKAP3 Silent p.A531A 0.36 TCGA-EE-A29D-06 12 4736476 4736476 G A AKAP3 Missense_Mutation p.A531V 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 47472445 47472445 G A AMIGO2 Missense_Mutation p.S114F 0.23 tolerated(0.24) probably_damaging(0.928) TCGA-EE-A29D-06 12 47629473 47629473 C T PCED1B Silent p.F209F 0.18 TCGA-EE-A29D-06 12 48371159 48371159 G A COL2A1 Missense_Mutation p.P1073S 0.28 unknown(0) TCGA-EE-A29D-06 12 48372429 48372429 G A COL2A1 Missense_Mutation p.P949L 0.20 unknown(0) TCGA-EE-A29D-06 12 48501970 48501970 C T PFKM Silent p.F66F 0.21 TCGA-EE-A29D-06 12 48736752 48736752 G A ZNF641 3'UTR 0.38 TCGA-EE-A29D-06 12 48919680 48919680 G A OR8S1 Missense_Mutation p.R89K 0.24 tolerated(1) benign(0.001) TCGA-EE-A29D-06 12 49254910 49254910 C T RND1 Missense_Mutation p.R108K 0.23 tolerated(1) benign(0.001) TCGA-EE-A29D-06 12 49361857 49361857 C T WNT10B Missense_Mutation p.E195K 0.21 tolerated(0.32) benign(0.334) TCGA-EE-A29D-06 12 49361921 49361921 G A WNT10B Silent p.F173F 0.38 TCGA-EE-A29D-06 12 49427207 49427207 G A KMT2D Missense_Mutation p.P3761S 0.25 benign(0.012) TCGA-EE-A29D-06 12 49433938 49433938 G A KMT2D Missense_Mutation p.P2539S 0.19 probably_damaging(0.998) TCGA-EE-A29D-06 12 49435259 49435259 G A KMT2D Silent p.D2098D 0.27 TCGA-EE-A29D-06 12 49442531 49442531 G T KMT2D Missense_Mutation p.P1348T 0.25 probably_damaging(0.993) TCGA-EE-A29D-06 12 49442532 49442532 A C KMT2D Silent p.S1347S 0.25 TCGA-EE-A29D-06 12 49444278 49444278 G A KMT2D Silent p.S1031S 0.15 TCGA-EE-A29D-06 12 49495066 49495066 G A LMBR1L Missense_Mutation p.S350F 0.33 tolerated(0.77) possibly_damaging(0.837) TCGA-EE-A29D-06 12 49579071 49579071 G A TUBA1A Missense_Mutation p.P360S 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-EE-A29D-06 12 49724857 49724857 C T TROAP Intron 0.25 TCGA-EE-A29D-06 12 49724984 49724984 C T TROAP Intron 0.42 TCGA-EE-A29D-06 12 49888605 49888605 C T SPATS2 Nonsense_Mutation p.Q116* 0.52 TCGA-EE-A29D-06 12 50187175 50187175 C T NCKAP5L Silent p.E1100E 0.30 TCGA-EE-A29D-06 12 50344626 50344626 C T AQP2 Missense_Mutation p.R5C 0.47 tolerated(0.1) benign(0.003) TCGA-EE-A29D-06 12 50344628 50344628 C T AQP2 Silent p.R5R 0.45 TCGA-EE-A29D-06 12 50344844 50344844 G A AQP2 Silent p.V77V 0.49 TCGA-EE-A29D-06 12 50349313 50349313 G A AQP2 Nonsense_Mutation p.W246* 0.62 TCGA-EE-A29D-06 12 50453675 50453675 C T ASIC1 Nonsense_Mutation p.R166* 0.50 TCGA-EE-A29D-06 12 51740457 51740457 G A CELA1 5'UTR 0.78 TCGA-EE-A29D-06 12 51754519 51754519 C T GALNT6 Missense_Mutation p.E385K 0.49 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 12 52699848 52699848 C T KRT86 Missense_Mutation p.S344F 0.32 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A29D-06 12 52961997 52961997 C T KRT74 Missense_Mutation p.M437I 0.28 tolerated(0.68) benign(0.003) TCGA-EE-A29D-06 12 52963710 52963710 C T KRT74 Missense_Mutation p.S356N 0.86 tolerated(1) benign(0.004) TCGA-EE-A29D-06 12 53097124 53097124 G A KRT77 Missense_Mutation p.P32L 0.94 tolerated(0.27) unknown(0) TCGA-EE-A29D-06 12 53165938 53165938 G A KRT76 Silent p.A359A 0.93 TCGA-EE-A29D-06 12 53217761 53217761 C T KRT79 Silent p.G352G 0.33 TCGA-EE-A29D-06 12 53686161 53686161 C T ESPL1 Nonsense_Mutation p.R1966* 0.20 TCGA-EE-A29D-06 12 54686623 54686623 C T NFE2 Silent p.R219R 0.17 TCGA-EE-A29D-06 12 54687108 54687108 C T NFE2 Missense_Mutation p.G58R 0.50 tolerated(0.56) possibly_damaging(0.621) TCGA-EE-A29D-06 12 54801929 54801929 C G ITGA5 Missense_Mutation p.R261P 0.39 tolerated(0.08) possibly_damaging(0.8) TCGA-EE-A29D-06 12 54903523 54903523 G A NCKAP1L Missense_Mutation p.E193K 0.46 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29D-06 12 54925532 54925532 G A NCKAP1L Missense_Mutation p.E902K 0.44 deleterious(0) probably_damaging(0.958) TCGA-EE-A29D-06 12 54963330 54963330 G A PDE1B Silent p.R137R 0.56 TCGA-EE-A29D-06 12 55251988 55251988 T G MUCL1 Missense_Mutation p.W79G 0.39 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 12 55361016 55361016 G A TESPA1 Silent p.F87F 0.40 TCGA-EE-A29D-06 12 55614901 55614901 C T OR10A7 Silent p.F31F 0.43 TCGA-EE-A29D-06 12 55615672 55615672 C T OR10A7 Silent p.I288I 0.42 TCGA-EE-A29D-06 12 55726246 55726246 C T OR6C3 Silent p.F254F 0.17 TCGA-EE-A29D-06 12 55846078 55846078 C T OR6C2 Silent p.I27I 0.20 TCGA-EE-A29D-06 12 55863874 55863874 C T OR6C70 Missense_Mutation p.D17N 0.12 tolerated_low_confidence(0.1) benign(0.011) TCGA-EE-A29D-06 12 55863875 55863875 C T OR6C70 Silent p.T16T 0.11 TCGA-EE-A29D-06 12 56075839 56075839 C T METTL7B Missense_Mutation p.P101S 0.24 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A29D-06 12 56086984 56086984 C T ITGA7 Missense_Mutation p.G889S 0.22 deleterious(0.04) possibly_damaging(0.447) TCGA-EE-A29D-06 12 56089326 56089326 C T ITGA7 Silent p.T665T 0.29 TCGA-EE-A29D-06 12 56488261 56488261 C T ERBB3 Silent p.L594L 0.40 TCGA-EE-A29D-06 12 56625012 56625012 G A SLC39A5 5'UTR 0.43 TCGA-EE-A29D-06 12 56868878 56868878 C T GLS2 Missense_Mutation p.E316K 0.42 deleterious(0.01) benign(0.145) TCGA-EE-A29D-06 12 57111791 57111791 G A NACA Intron 0.42 TCGA-EE-A29D-06 12 57111881 57111881 G A NACA Intron 0.45 TCGA-EE-A29D-06 12 57146080 57146080 C T PRIM1 Translation_Start_Site p.M1? 0.27 tolerated_low_confidence(0.17) benign(0.028) TCGA-EE-A29D-06 12 57348785 57348785 C A RDH16 Silent p.V159V 0.18 TCGA-EE-A29D-06 12 57397399 57397399 G A ZBTB39 Missense_Mutation p.P435S 0.36 tolerated(0.14) probably_damaging(0.997) TCGA-EE-A29D-06 12 57437088 57437088 G A MYO1A Missense_Mutation p.A316V 0.21 deleterious(0.03) possibly_damaging(0.893) TCGA-EE-A29D-06 12 57500318 57500318 G A STAT6 Missense_Mutation p.P175L 0.18 tolerated(0.22) benign(0.077) TCGA-EE-A29D-06 12 57578924 57578924 C T LRP1 Silent p.P2133P 0.10 TCGA-EE-A29D-06 12 57588351 57588351 G A LRP1 Intron 0.36 TCGA-EE-A29D-06 12 57602525 57602525 C T LRP1 Missense_Mutation p.P4024S 0.15 possibly_damaging(0.874) TCGA-EE-A29D-06 12 57843538 57843538 G A INHBC Nonsense_Mutation p.W264* 0.25 TCGA-EE-A29D-06 12 57865753 57865753 C T GLI1 Missense_Mutation p.P1077L 0.14 deleterious(0.01) benign(0.089) TCGA-EE-A29D-06 12 57884323 57884323 G A MARS Silent p.E222E 0.16 TCGA-EE-A29D-06 12 57884324 57884324 G A MARS Missense_Mutation p.E223K 0.16 tolerated(0.5) benign(0.018) TCGA-EE-A29D-06 12 57972039 57972039 G A KIF5A Missense_Mutation p.E818K 0.21 deleterious(0.02) benign(0.171) TCGA-EE-A29D-06 12 58018757 58018757 G A SLC26A10 Missense_Mutation p.G446R 0.45 tolerated(0.36) benign(0.015) TCGA-EE-A29D-06 12 58018758 58018758 G A SLC26A10 Missense_Mutation p.G446E 0.45 tolerated(0.46) benign(0.015) TCGA-EE-A29D-06 12 58022621 58022621 G A B4GALNT1 Missense_Mutation p.R293W 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 12 58087940 58087940 G A OS9 5'UTR 0.23 TCGA-EE-A29D-06 12 58122065 58122065 C T AGAP2-AS1 3'UTR 0.17 TCGA-EE-A29D-06 12 58135802 58135802 C T AGAP2 5'Flank 0.41 TCGA-EE-A29D-06 12 58135834 58135834 G A AGAP2 5'Flank 0.26 TCGA-EE-A29D-06 12 5860070 5860070 G A ANO2 Silent p.I370I 0.16 TCGA-EE-A29D-06 12 6131123 6131123 A G VWF Missense_Mutation p.F1206S 0.14 deleterious(0) benign(0.002) TCGA-EE-A29D-06 12 6427490 6427490 G A PLEKHG6 Silent p.L393L 0.31 TCGA-EE-A29D-06 12 65471549 65471549 C T WIF1 Missense_Mutation p.G125E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 66152025 66152025 C T RPSAP52 RNA 0.30 TCGA-EE-A29D-06 12 662826 662826 G A B4GALNT3 Silent p.R579R 0.38 TCGA-EE-A29D-06 12 6640633 6640633 C T NCAPD2 3'UTR 0.37 TCGA-EE-A29D-06 12 66747280 66747280 C T GRIP1 Missense_Mutation p.E974K 0.19 deleterious(0) possibly_damaging(0.687) TCGA-EE-A29D-06 12 67688816 67688816 C T CAND1 Missense_Mutation p.S124F 0.40 deleterious(0.02) possibly_damaging(0.565) TCGA-EE-A29D-06 12 70003737 70003737 G A LRRC10 3'UTR 0.60 TCGA-EE-A29D-06 12 70149251 70149251 C T RAB3IP Silent p.D37D 0.32 TCGA-EE-A29D-06 12 7067128 7067128 C T PTPN6 Missense_Mutation p.P418L 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A29D-06 12 70918266 70918266 G A PTPRB Missense_Mutation p.P2204S 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29D-06 12 70931970 70931970 G A PTPRB Missense_Mutation p.P1971S 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29D-06 12 70933794 70933794 C T PTPRB Missense_Mutation p.R1868Q 0.38 tolerated(0.88) benign(0.002) TCGA-EE-A29D-06 12 70949819 70949819 C T PTPRB Silent p.R1608R 0.19 TCGA-EE-A29D-06 12 70956757 70956757 C T PTPRB Silent p.Q1345Q 0.19 TCGA-EE-A29D-06 12 71029486 71029486 C T PTPRB Missense_Mutation p.G139E 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29D-06 12 71286745 71286745 C T PTPRR Missense_Mutation p.G24E 0.41 deleterious_low_confidence(0.01) benign(0.091) TCGA-EE-A29D-06 12 71977857 71977857 C T LGR5 Silent p.A689A 0.48 TCGA-EE-A29D-06 12 72366380 72366380 C T TPH2 Silent p.L230L 0.16 TCGA-EE-A29D-06 12 72680510 72680510 C T TRHDE Missense_Mutation p.P277S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 72969126 72969126 G A TRHDE Silent p.R696R 0.55 TCGA-EE-A29D-06 12 7362672 7362672 C T PEX5 Silent p.G606G 0.14 TCGA-EE-A29D-06 12 75737648 75737648 G A GLIPR1L1 Nonsense_Mutation p.W117* 0.37 TCGA-EE-A29D-06 12 7585083 7585083 C T CD163L1 Nonsense_Mutation p.W232* 0.18 TCGA-EE-A29D-06 12 7632482 7632482 C T CD163 Missense_Mutation p.E1152K 0.40 tolerated(0.17) benign(0.003) TCGA-EE-A29D-06 12 7635262 7635262 C T CD163 Missense_Mutation p.R1075Q 0.24 tolerated(0.61) benign(0.007) TCGA-EE-A29D-06 12 7639308 7639308 C T CD163 Missense_Mutation p.D749N 0.22 deleterious(0.02) benign(0.294) TCGA-EE-A29D-06 12 78452854 78452854 C T NAV3 Silent p.I865I 0.23 TCGA-EE-A29D-06 12 79685898 79685898 C T SYT1 Silent p.F154F 0.48 TCGA-EE-A29D-06 12 79689863 79689863 C T SYT1 Silent p.I163I 0.23 TCGA-EE-A29D-06 12 79842834 79842834 G A SYT1 Missense_Mutation p.R400Q 0.54 deleterious(0) probably_damaging(0.981) TCGA-EE-A29D-06 12 80626770 80626770 G A OTOGL Missense_Mutation p.G228E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 12 80729862 80729862 C T OTOGL Silent p.F1505F 0.53 TCGA-EE-A29D-06 12 80735793 80735793 G A OTOGL Missense_Mutation p.E1697K 0.25 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A29D-06 12 8074185 8074185 G A SLC2A3 Missense_Mutation p.L439F 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29D-06 12 80749524 80749524 G A OTOGL Missense_Mutation p.D1859N 0.50 deleterious(0) possibly_damaging(0.898) TCGA-EE-A29D-06 12 81102314 81102314 G A MYF6 Silent p.A177A 0.25 TCGA-EE-A29D-06 12 81110906 81110906 C T MYF5 Missense_Mutation p.P22S 0.25 tolerated(1) benign(0.07) TCGA-EE-A29D-06 12 82870468 82870468 C T METTL25 Nonsense_Mutation p.R540* 0.57 TCGA-EE-A29D-06 12 8329602 8329602 C T ZNF705A Missense_Mutation p.S109F 0.44 tolerated(0.22) benign(0) TCGA-EE-A29D-06 12 8329765 8329765 A G ZNF705A Silent p.K163K 0.19 TCGA-EE-A29D-06 12 85460562 85460562 G A LRRIQ1 Missense_Mutation p.E861K 0.20 deleterious(0) possibly_damaging(0.813) TCGA-EE-A29D-06 12 86374086 86374086 G A MGAT4C Missense_Mutation p.H140Y 0.45 tolerated(0.28) benign(0.057) TCGA-EE-A29D-06 12 89992999 89992999 A C ATP2B1 Silent p.P1082P 0.91 TCGA-EE-A29D-06 12 9002352 9002352 G A A2ML1 Missense_Mutation p.G706S 0.21 tolerated(0.52) benign(0.001) TCGA-EE-A29D-06 12 9074316 9074316 C A PHC1 Silent p.L142L 0.36 TCGA-EE-A29D-06 12 91449587 91449587 G A KERA Missense_Mutation p.P158S 0.92 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A29D-06 12 9313035 9313035 G A PZP Missense_Mutation p.P975L 0.16 deleterious(0) probably_damaging(0.977) TCGA-EE-A29D-06 12 93173037 93173037 G A EEA1 Nonsense_Mutation p.Q1170* 0.92 TCGA-EE-A29D-06 12 94620392 94620392 G - PLXNC1 Frame_Shift_Del p.C601Sfs*2 0.50 TCGA-EE-A29D-06 12 97045493 97045493 G A C12orf55 Missense_Mutation p.S1667N 0.57 tolerated(0.23) benign(0.042) TCGA-EE-A29D-06 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.50 tolerated(0.07) benign(0.183) TCGA-EE-A29D-06 12 9885592 9885592 G T CLECL1 Missense_Mutation p.T90N 0.24 deleterious(0.03) benign(0.437) TCGA-EE-A29D-06 12 99201670 99201670 C T ANKS1B Intron 0.88 TCGA-EE-A29D-06 13 101742293 101742293 G A NALCN Silent p.F1098F 0.25 TCGA-EE-A29D-06 13 101756703 101756703 G A NALCN Silent p.F944F 0.25 TCGA-EE-A29D-06 13 101997716 101997716 C T NALCN Missense_Mutation p.E234K 0.27 tolerated(0.57) benign(0.088) TCGA-EE-A29D-06 13 102227834 102227834 G A ITGBL1 Missense_Mutation p.G175S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 13 102375206 102375206 G A FGF14 Missense_Mutation p.P245L 0.27 deleterious(0.01) possibly_damaging(0.596) TCGA-EE-A29D-06 13 103474477 103474477 C T BIVM-ERCC5 Missense_Mutation p.P262L 0.30 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A29D-06 13 103698526 103698526 G A SLC10A2 Missense_Mutation p.S335L 0.67 tolerated(0.08) benign(0.001) TCGA-EE-A29D-06 13 103703762 103703762 G A SLC10A2 Silent p.A202A 0.18 TCGA-EE-A29D-06 13 110827619 110827619 C T COL4A1 Silent p.E1048E 0.25 TCGA-EE-A29D-06 13 111156522 111156522 G A COL4A2 Missense_Mutation p.G1438E 0.65 unknown(0) TCGA-EE-A29D-06 13 111368024 111368024 C T ING1 Silent p.S78S 0.43 TCGA-EE-A29D-06 13 113212622 113212622 G A TUBGCP3 Missense_Mutation p.R146W 0.32 deleterious(0) possibly_damaging(0.677) TCGA-EE-A29D-06 13 113556606 113556606 G A MCF2L Silent p.E30E 0.24 TCGA-EE-A29D-06 13 114083399 114083399 C T ADPRHL1 Missense_Mutation p.G172S 0.26 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 13 114164666 114164666 C T TMCO3 Silent p.S384S 0.28 TCGA-EE-A29D-06 13 20763697 20763697 C T GJB2 Silent p.T8T 0.17 TCGA-EE-A29D-06 13 21357876 21357876 G A XPO4 Silent p.L1147L 0.35 TCGA-EE-A29D-06 13 25458130 25458130 G A CENPJ Silent p.F1265F 0.88 TCGA-EE-A29D-06 13 25479685 25479685 T A CENPJ Missense_Mutation p.I831L 0.49 tolerated(0.22) benign(0.002) TCGA-EE-A29D-06 13 28608113 28608113 G A FLT3 Missense_Mutation p.S618L 0.46 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29D-06 13 29012450 29012450 C T FLT1 Missense_Mutation p.E141K 0.32 tolerated(0.31) benign(0.232) TCGA-EE-A29D-06 13 29599996 29599996 G A MTUS2 Silent p.G397G 0.90 TCGA-EE-A29D-06 13 29855947 29855947 G A MTUS2 Silent p.V927V 0.35 TCGA-EE-A29D-06 13 32813462 32813462 G A FRY Silent p.K2164K 0.28 TCGA-EE-A29D-06 13 32836468 32836468 C T FRY Silent p.P2545P 0.28 TCGA-EE-A29D-06 13 32972405 32972405 C T BRCA2 Missense_Mutation p.S3252F 0.33 deleterious(0.03) benign(0.211) TCGA-EE-A29D-06 13 33634886 33634886 T C KL Missense_Mutation p.L557P 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 13 33635652 33635652 C T KL Silent p.I812I 0.32 TCGA-EE-A29D-06 13 33635751 33635751 G A KL Silent p.V845V 0.29 TCGA-EE-A29D-06 13 35644898 35644898 C T NBEA Missense_Mutation p.H494Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 13 35745412 35745412 G A NBEA Missense_Mutation p.E1416K 0.42 deleterious(0) possibly_damaging(0.752) TCGA-EE-A29D-06 13 35745584 35745584 G A NBEA Missense_Mutation p.R1473K 0.29 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 13 35756611 35756611 G A NBEA Missense_Mutation p.G1593R 0.44 tolerated(0.18) benign(0.042) TCGA-EE-A29D-06 13 36242559 36242559 G A NBEA Missense_Mutation p.V2885I 0.19 tolerated(0.31) benign(0.393) TCGA-EE-A29D-06 13 37269111 37269111 G A SERTM1 5'UTR 0.44 TCGA-EE-A29D-06 13 37427646 37427646 G A SMAD9 Silent p.F390F 0.27 TCGA-EE-A29D-06 13 37446810 37446810 G A SMAD9 Missense_Mutation p.P219S 0.28 tolerated(0.19) benign(0.259) TCGA-EE-A29D-06 13 38144719 38144719 G C POSTN Missense_Mutation p.T756R 0.54 tolerated_low_confidence(0.29) benign(0.027) TCGA-EE-A29D-06 13 38160304 38160304 C T POSTN Silent p.R289R 0.32 TCGA-EE-A29D-06 13 39265585 39265585 G A FREM2 Missense_Mutation p.M1368I 0.61 deleterious(0.01) benign(0.157) TCGA-EE-A29D-06 13 39266535 39266535 A G FREM2 Missense_Mutation p.K1685R 0.28 tolerated(0.43) benign(0.003) TCGA-EE-A29D-06 13 39588581 39588581 G A PROSER1 Missense_Mutation p.P270S 0.69 deleterious(0) probably_damaging(0.974) TCGA-EE-A29D-06 13 41133979 41133979 G A FOXO1 Missense_Mutation p.S550L 0.25 tolerated(0.09) benign(0.08) TCGA-EE-A29D-06 13 41134548 41134548 G A FOXO1 Silent p.P360P 0.70 TCGA-EE-A29D-06 13 41768229 41768229 G A KBTBD7 Silent p.S55S 0.57 TCGA-EE-A29D-06 13 42763247 42763247 C T DGKH Missense_Mutation p.P572S 0.70 tolerated(0.26) benign(0.002) TCGA-EE-A29D-06 13 42793828 42793828 C T DGKH Missense_Mutation p.P1114S 0.25 tolerated(0.97) benign(0.013) TCGA-EE-A29D-06 13 42875112 42875112 C T AKAP11 Missense_Mutation p.P744S 0.32 tolerated(0.31) benign(0.098) TCGA-EE-A29D-06 13 42882663 42882663 G C AKAP11 Missense_Mutation p.D1731H 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 13 45515448 45515448 G A NUFIP1 Missense_Mutation p.P461S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29D-06 13 45517738 45517738 G A NUFIP1 Missense_Mutation p.P404S 0.39 tolerated(0.08) benign(0.137) TCGA-EE-A29D-06 13 46287427 46287427 C T SPERT Silent p.S89S 0.65 TCGA-EE-A29D-06 13 48575367 48575367 C T SUCLA2 Silent p.V13V 0.25 TCGA-EE-A29D-06 13 51921322 51921322 C T SERPINE3 Missense_Mutation p.L218F 0.30 tolerated(0.71) possibly_damaging(0.866) TCGA-EE-A29D-06 13 51943425 51943425 G A INTS6 Missense_Mutation p.S709L 0.23 tolerated(0.29) benign(0) TCGA-EE-A29D-06 13 52313275 52313275 G A WDFY2 Missense_Mutation p.G230E 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 13 53418923 53418923 C T PCDH8 Silent p.R995R 0.22 TCGA-EE-A29D-06 13 53420594 53420594 C T PCDH8 Missense_Mutation p.E660K 0.18 tolerated(0.84) benign(0.049) TCGA-EE-A29D-06 13 58208178 58208178 G A PCDH17 Missense_Mutation p.D500N 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 13 67205428 67205428 G A PCDH9 Missense_Mutation p.P1085L 0.26 deleterious(0) benign(0.236) TCGA-EE-A29D-06 13 70456521 70456521 G A KLHL1 Missense_Mutation p.T374I 0.27 tolerated(0.05) benign(0.159) TCGA-EE-A29D-06 13 73357849 73357849 A T PIBF1 Missense_Mutation p.Y81F 0.33 tolerated(0.16) benign(0.022) TCGA-EE-A29D-06 13 74387374 74387374 C T KLF12 Missense_Mutation p.D241N 0.22 deleterious(0) possibly_damaging(0.877) TCGA-EE-A29D-06 13 84453631 84453631 G A SLITRK1 Missense_Mutation p.S671F 0.23 tolerated(0.2) benign(0.039) TCGA-EE-A29D-06 13 84453706 84453706 C T SLITRK1 Missense_Mutation p.R646Q 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A29D-06 13 92345806 92345806 C T GPC5 Silent p.L231L 0.29 TCGA-EE-A29D-06 13 96239872 96239872 C T DZIP1 Silent p.G713G 0.59 TCGA-EE-A29D-06 13 97484827 97484827 G A HS6ST3 Nonsense_Mutation p.W264* 0.29 TCGA-EE-A29D-06 13 99358477 99358477 C T SLC15A1 Missense_Mutation p.E394K 0.38 tolerated(0.07) benign(0.329) TCGA-EE-A29D-06 13 99361879 99361879 C T SLC15A1 Silent p.P338P 0.23 TCGA-EE-A29D-06 13 99362128 99362128 C T SLC15A1 Missense_Mutation p.G313E 0.56 deleterious(0) probably_damaging(0.97) TCGA-EE-A29D-06 13 99853796 99853796 C T UBAC2 Intron 0.19 TCGA-EE-A29D-06 14 100387194 100387194 C T EML1 Missense_Mutation p.S649F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 14 100793595 100793595 G C SLC25A47 Missense_Mutation p.G72A 0.42 deleterious(0) probably_damaging(0.936) TCGA-EE-A29D-06 14 100793623 100793623 C T SLC25A47 Silent p.I81I 0.49 TCGA-EE-A29D-06 14 101349370 101349370 C T RTL1 Missense_Mutation p.D586N 0.25 tolerated(0.19) probably_damaging(0.995) TCGA-EE-A29D-06 14 101404598 101404598 C T SNORD113-5 RNA 0.44 TCGA-EE-A29D-06 14 101405923 101405923 G A SNORD113-6 RNA 0.24 TCGA-EE-A29D-06 14 101418202 101418202 G A SNORD114-2 RNA 0.29 TCGA-EE-A29D-06 14 101418254 101418254 G A SNORD114-2 RNA 0.18 TCGA-EE-A29D-06 14 101491915 101491915 G A MIR1197 RNA 0.59 TCGA-EE-A29D-06 14 101512865 101512865 T C MIR487B RNA 0.14 TCGA-EE-A29D-06 14 103404490 103404490 G A CDC42BPB Missense_Mutation p.T1652I 0.39 tolerated(0.14) benign(0.005) TCGA-EE-A29D-06 14 104571709 104571709 G A ASPG Silent p.V365V 0.17 TCGA-EE-A29D-06 14 104618511 104618511 G A KIF26A Missense_Mutation p.E150K 0.42 deleterious(0.02) benign(0.115) TCGA-EE-A29D-06 14 105394151 105394151 C T PLD4 Missense_Mutation p.P78S 0.35 tolerated(0.36) benign(0.01) TCGA-EE-A29D-06 14 105408158 105408158 C T AHNAK2 Missense_Mutation p.G4544R 0.19 probably_damaging(0.976) TCGA-EE-A29D-06 14 105410526 105410526 C T AHNAK2 Silent p.K3754K 0.24 TCGA-EE-A29D-06 14 105415216 105415216 G A AHNAK2 Missense_Mutation p.S2191F 0.20 possibly_damaging(0.641) TCGA-EE-A29D-06 14 105418034 105418034 G A AHNAK2 Missense_Mutation p.P1252S 0.49 probably_damaging(0.932) TCGA-EE-A29D-06 14 106054209 106054209 G A IGHA2 Missense_Mutation p.P104S 0.40 tolerated(0.83) benign(0.012) TCGA-EE-A29D-06 14 106173523 106173523 C T IGHA1 Silent p.V348V 0.17 TCGA-EE-A29D-06 14 106311793 106311793 G A IGHD Silent p.P73P 0.41 TCGA-EE-A29D-06 14 106311855 106311855 T C IGHD Missense_Mutation p.T53A 0.25 tolerated(0.77) benign(0.003) TCGA-EE-A29D-06 14 106330029 106330029 G A IGHJ5 Missense_Mutation p.S15F 0.38 probably_damaging(0.954) TCGA-EE-A29D-06 14 106405885 106405885 C T IGHV6-1 Missense_Mutation p.G30E 0.35 deleterious(0.02) benign(0.18) TCGA-EE-A29D-06 14 106573443 106573443 G A IGHV3-11 Silent p.T47T 0.19 TCGA-EE-A29D-06 14 106725374 106725374 G A IGHV3-23 Missense_Mutation p.P60S 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.669) TCGA-EE-A29D-06 14 106733271 106733271 C T IGHV1-24 Missense_Mutation p.G75D 0.23 tolerated(0.08) benign(0.227) TCGA-EE-A29D-06 14 106757824 106757824 G A IGHV2-26 Silent p.P61P 0.15 TCGA-EE-A29D-06 14 106866632 106866632 C A IGHV3-38 Missense_Mutation p.C41F 0.16 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-EE-A29D-06 14 106967482 106967482 C T IGHV1-46 Translation_Start_Site p.M1? 0.56 deleterious(0.02) benign(0.308) TCGA-EE-A29D-06 14 107083417 107083417 C T IGHV4-59 Missense_Mutation p.G63R 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.576) TCGA-EE-A29D-06 14 107095231 107095231 G A IGHV4-61 Silent p.S83S 0.28 TCGA-EE-A29D-06 14 107170178 107170178 G A IGHV1-69 Missense_Mutation p.S35F 0.12 deleterious(0.01) possibly_damaging(0.703) TCGA-EE-A29D-06 14 107219103 107219103 G A IGHV3-74 Silent p.F9F 0.39 TCGA-EE-A29D-06 14 19377812 19377812 C T OR11H12 Silent p.P73P 0.19 TCGA-EE-A29D-06 14 19378024 19378024 C T OR11H12 Missense_Mutation p.P144L 0.16 deleterious(0) probably_damaging(0.984) TCGA-EE-A29D-06 14 19378274 19378274 C T OR11H12 Silent p.L227L 0.26 TCGA-EE-A29D-06 14 19553722 19553722 C T POTEG Silent p.C102C 0.14 TCGA-EE-A29D-06 14 19562096 19562096 G A POTEG Missense_Mutation p.G305R 0.95 tolerated(0.18) probably_damaging(0.934) TCGA-EE-A29D-06 14 19574324 19574324 C T POTEG Missense_Mutation p.P461S 0.29 tolerated(0.14) benign(0.035) TCGA-EE-A29D-06 14 20019948 20019948 C T POTEM Missense_Mutation p.M91I 0.13 deleterious_low_confidence(0.01) benign(0.035) TCGA-EE-A29D-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.36 deleterious(0) possibly_damaging(0.659) TCGA-EE-A29D-06 14 20249051 20249051 C T OR4M1 Silent p.A190A 0.28 TCGA-EE-A29D-06 14 20389257 20389257 G A OR4K5 Silent p.V164V 0.22 TCGA-EE-A29D-06 14 20403870 20403870 G A OR4K1 Silent p.L15L 0.23 TCGA-EE-A29D-06 14 20404375 20404375 G A OR4K1 Missense_Mutation p.V184M 0.34 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29D-06 14 20483286 20483286 G A OR4K14 Missense_Mutation p.L23F 0.34 deleterious(0.01) benign(0.021) TCGA-EE-A29D-06 14 20528262 20528262 G A OR4L1 Missense_Mutation p.R20Q 0.40 deleterious(0.03) benign(0) TCGA-EE-A29D-06 14 20528836 20528836 C T OR4L1 Silent p.F211F 0.15 TCGA-EE-A29D-06 14 20586399 20586399 G A OR4K17 Silent p.V278V 0.42 TCGA-EE-A29D-06 14 20612077 20612077 C T OR4N5 Silent p.F61F 0.23 TCGA-EE-A29D-06 14 20612527 20612527 C T OR4N5 Silent p.F211F 0.31 TCGA-EE-A29D-06 14 20665671 20665671 G A OR11G2 Silent p.R59R 0.46 TCGA-EE-A29D-06 14 20666202 20666202 C T OR11G2 Silent p.V236V 0.40 TCGA-EE-A29D-06 14 21360231 21360231 C T RNASE3 Missense_Mutation p.P129L 0.22 tolerated(0.31) benign(0.009) TCGA-EE-A29D-06 14 21793478 21793478 G A RPGRIP1 Missense_Mutation p.R768Q 0.22 tolerated(0.25) benign(0.028) TCGA-EE-A29D-06 14 21796656 21796656 G A RPGRIP1 Missense_Mutation p.G990E 0.37 tolerated(0.05) benign(0.209) TCGA-EE-A29D-06 14 21860086 21860086 G T CHD8 Missense_Mutation p.T2264K 0.18 deleterious(0.02) benign(0.403) TCGA-EE-A29D-06 14 21878090 21878090 C T CHD8 Missense_Mutation p.E762K 0.44 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 14 22102955 22102955 T C OR10G2 Missense_Mutation p.D15G 0.52 deleterious(0.03) benign(0) TCGA-EE-A29D-06 14 22133562 22133562 G A OR4E2 Missense_Mutation p.R89K 0.49 tolerated(0.56) benign(0.002) TCGA-EE-A29D-06 14 22133575 22133575 C T OR4E2 Silent p.S93S 0.43 TCGA-EE-A29D-06 14 22294010 22294010 G A TRAV10 Silent p.K38K 0.48 TCGA-EE-A29D-06 14 22433768 22433768 C T TRAV12-3 Silent p.I11I 0.14 TCGA-EE-A29D-06 14 22434020 22434020 G A TRAV12-3 Missense_Mutation p.E25K 0.22 tolerated(0.43) benign(0.016) TCGA-EE-A29D-06 14 22466140 22466140 G A TRAV17 Missense_Mutation p.G24R 0.16 tolerated(0.53) benign(0.01) TCGA-EE-A29D-06 14 22476158 22476158 G A TRAV19 Missense_Mutation p.E30K 0.24 tolerated(0.59) benign(0.037) TCGA-EE-A29D-06 14 22476212 22476212 C T TRAV19 Missense_Mutation p.R48C 0.25 deleterious(0) possibly_damaging(0.764) TCGA-EE-A29D-06 14 22789052 22789052 G A TRAV41 Missense_Mutation p.E89K 0.11 deleterious(0.02) benign(0.255) TCGA-EE-A29D-06 14 23000893 23000893 G A TRAJ12 Missense_Mutation p.M2I 0.24 unknown(0) TCGA-EE-A29D-06 14 23346314 23346314 C T LRP10 Missense_Mutation p.R574W 0.43 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A29D-06 14 23375447 23375447 G A RBM23 Missense_Mutation p.R120C 0.23 tolerated(0.09) benign(0.336) TCGA-EE-A29D-06 14 23395389 23395389 G A PRMT5 Missense_Mutation p.P244S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 23794356 23794356 C T PABPN1 Intron 0.57 TCGA-EE-A29D-06 14 23862712 23862712 C T MYH6 Missense_Mutation p.E982K 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 14 23865993 23865993 C T MYH6 Silent p.E734E 0.21 TCGA-EE-A29D-06 14 23886827 23886827 G A MYH7 Missense_Mutation p.S1413L 0.44 deleterious(0) probably_damaging(0.972) TCGA-EE-A29D-06 14 23897768 23897768 C T MYH7 Missense_Mutation p.E507K 0.25 deleterious(0.01) benign(0.18) TCGA-EE-A29D-06 14 23944952 23944952 C T NGDN Missense_Mutation p.R129C 0.25 tolerated(0.12) benign(0.026) TCGA-EE-A29D-06 14 24546584 24546584 C T CPNE6 Silent p.F507F 0.47 TCGA-EE-A29D-06 14 24613650 24613650 G A PSME2 Missense_Mutation p.P130S 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 14 24618631 24618631 C T RNF31 Silent p.P216P 0.19 TCGA-EE-A29D-06 14 24682688 24682688 G A CHMP4A Silent p.V29V 0.26 TCGA-EE-A29D-06 14 24731284 24731284 G A TGM1 Missense_Mutation p.S92F 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29D-06 14 24775314 24775314 C T CIDEB Silent p.R122R 0.30 TCGA-EE-A29D-06 14 24974865 24974865 C T CMA1 Missense_Mutation p.G201R 0.25 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A29D-06 14 30046433 30046433 G A PRKD1 3'UTR 0.25 TCGA-EE-A29D-06 14 31169402 31169402 C T SCFD1 Missense_Mutation p.P450S 0.22 deleterious(0.03) benign(0.091) TCGA-EE-A29D-06 14 31774237 31774237 G A RP11-596D21.1 3'Flank 0.32 TCGA-EE-A29D-06 14 32562880 32562880 C A ARHGAP5 Missense_Mutation p.P1002Q 0.47 tolerated(0.11) possibly_damaging(0.776) TCGA-EE-A29D-06 14 36133961 36133961 C T RALGAPA1 Missense_Mutation p.E1233K 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29D-06 14 36191028 36191028 G A RALGAPA1 Missense_Mutation p.S711L 0.41 deleterious(0.02) benign(0.066) TCGA-EE-A29D-06 14 36840614 36840614 C T DPPA3P2 RNA 0.28 TCGA-EE-A29D-06 14 36946243 36946243 C T SFTA3 Missense_Mutation p.G65E 0.49 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29D-06 14 37180645 37180645 C A SLC25A21 Nonsense_Mutation p.E161* 0.51 TCGA-EE-A29D-06 14 38295502 38295502 C T TTC6 Nonsense_Mutation p.Q1693* 0.37 TCGA-EE-A29D-06 14 39304827 39304827 C T LINC00639 RNA 0.18 TCGA-EE-A29D-06 14 39304838 39304838 G A LINC00639 RNA 0.27 TCGA-EE-A29D-06 14 39716361 39716361 G A MIA2 Missense_Mutation p.D195N 0.26 tolerated(0.46) benign(0.003) TCGA-EE-A29D-06 14 39819507 39819507 C T CTAGE5 3'UTR 0.21 TCGA-EE-A29D-06 14 42361005 42361005 G A LRFN5 Silent p.K646K 0.27 TCGA-EE-A29D-06 14 44975515 44975515 G A FSCB Missense_Mutation p.P226S 0.20 tolerated(0.72) benign(0.027) TCGA-EE-A29D-06 14 45513922 45513922 C T FAM179B Nonsense_Mutation p.Q1335* 0.24 TCGA-EE-A29D-06 14 50089303 50089303 C T MGAT2 Silent p.L439L 0.17 TCGA-EE-A29D-06 14 50625329 50625329 G A SOS2 Missense_Mutation p.R630C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 51096714 51096714 G A ATL1 Missense_Mutation p.G518E 0.18 tolerated(0.45) benign(0.005) TCGA-EE-A29D-06 14 52496382 52496382 G A NID2 Missense_Mutation p.P762S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 52520482 52520482 G A NID2 Missense_Mutation p.P415L 0.23 tolerated(0.19) benign(0.001) TCGA-EE-A29D-06 14 52735294 52735294 C T PTGDR Silent p.S254S 0.23 TCGA-EE-A29D-06 14 52741452 52741452 C T PTGDR Missense_Mutation p.R284C 0.19 tolerated(0.15) probably_damaging(0.99) TCGA-EE-A29D-06 14 52793975 52793975 G A PTGER2 Missense_Mutation p.E294K 0.12 tolerated(0.19) benign(0.008) TCGA-EE-A29D-06 14 53522512 53522512 T C DDHD1 Missense_Mutation p.N704S 0.21 tolerated(0.11) benign(0.023) TCGA-EE-A29D-06 14 57268715 57268715 G A OTX2 Missense_Mutation p.S211L 0.53 deleterious(0.01) possibly_damaging(0.686) TCGA-EE-A29D-06 14 58813147 58813147 C T ARID4A Missense_Mutation p.P333L 0.13 deleterious(0.04) possibly_damaging(0.788) TCGA-EE-A29D-06 14 58917345 58917345 C T KIAA0586 Missense_Mutation p.P390L 0.36 deleterious(0) probably_damaging(0.964) TCGA-EE-A29D-06 14 59939637 59939637 G A L3HYPDH 3'UTR 0.17 TCGA-EE-A29D-06 14 60193833 60193833 G A RTN1 Silent p.L523L 0.17 TCGA-EE-A29D-06 14 60193865 60193865 G A RTN1 Missense_Mutation p.R513W 0.19 deleterious(0) possibly_damaging(0.513) TCGA-EE-A29D-06 14 60928079 60928079 C T C14orf39 Silent p.G370G 0.33 TCGA-EE-A29D-06 14 60928080 60928080 C T C14orf39 Missense_Mutation p.G370E 0.33 tolerated(0.33) benign(0.177) TCGA-EE-A29D-06 14 63174724 63174724 C T KCNH5 Silent p.E823E 0.19 TCGA-EE-A29D-06 14 63174948 63174948 C T KCNH5 Missense_Mutation p.G749R 0.40 tolerated(0.28) benign(0.167) TCGA-EE-A29D-06 14 63175003 63175003 C T KCNH5 Silent p.E730E 0.46 TCGA-EE-A29D-06 14 63417186 63417186 C T KCNH5 Missense_Mutation p.G345E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 64473769 64473769 C T SYNE2 Missense_Mutation p.S1469L 0.19 benign(0.034) TCGA-EE-A29D-06 14 64520142 64520142 C T SYNE2 Nonsense_Mutation p.Q3171* 0.44 TCGA-EE-A29D-06 14 65260143 65260143 G A SPTB Silent p.F746F 0.57 TCGA-EE-A29D-06 14 66200043 66200043 C T FUT8 Silent p.L452L 0.17 TCGA-EE-A29D-06 14 67940517 67940517 G A TMEM229B Missense_Mutation p.P42S 0.41 tolerated(0.1) possibly_damaging(0.768) TCGA-EE-A29D-06 14 68248109 68248109 G A ZFYVE26 Nonsense_Mutation p.Q1504* 0.22 TCGA-EE-A29D-06 14 69352141 69352141 C T ACTN1 Splice_Site p.X462_splice 0.28 TCGA-EE-A29D-06 14 70515731 70515731 C T SLC8A3 Silent p.G720G 0.24 TCGA-EE-A29D-06 14 70634264 70634264 C T SLC8A3 Missense_Mutation p.M292I 0.20 tolerated(0.29) benign(0.001) TCGA-EE-A29D-06 14 70634325 70634325 C T SLC8A3 Missense_Mutation p.G272E 0.28 deleterious(0) possibly_damaging(0.585) TCGA-EE-A29D-06 14 70634416 70634416 G A SLC8A3 Missense_Mutation p.P242S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 71199670 71199670 G A MAP3K9 Missense_Mutation p.R820W 0.51 deleterious(0) probably_damaging(0.935) TCGA-EE-A29D-06 14 71205035 71205035 C T MAP3K9 Missense_Mutation p.A591T 0.30 tolerated(0.06) benign(0.004) TCGA-EE-A29D-06 14 71522276 71522276 C T PCNX Missense_Mutation p.P1545S 0.55 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 14 72138208 72138208 C T SIPA1L1 Silent p.C876C 0.16 TCGA-EE-A29D-06 14 72936715 72936715 G A RGS6 Missense_Mutation p.E154K 0.46 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29D-06 14 74004356 74004356 C T ACOT1 Silent p.P77P 0.17 TCGA-EE-A29D-06 14 74874374 74874374 C T SYNDIG1L Missense_Mutation p.G194E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 74874375 74874375 C T SYNDIG1L Missense_Mutation p.G194R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 74874637 74874637 G A SYNDIG1L Missense_Mutation p.P158L 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 14 74973893 74973893 C T LTBP2 Missense_Mutation p.G1299E 0.55 deleterious(0.03) benign(0.107) TCGA-EE-A29D-06 14 74973894 74973894 C T LTBP2 Missense_Mutation p.G1299R 0.56 tolerated(0.15) benign(0.172) TCGA-EE-A29D-06 14 75200864 75200864 C T FCF1 Missense_Mutation p.S180F 0.21 deleterious(0.02) possibly_damaging(0.582) TCGA-EE-A29D-06 14 75537901 75537901 G A ZC2HC1C Missense_Mutation p.E209K 0.17 tolerated(0.05) benign(0.043) TCGA-EE-A29D-06 14 75567738 75567738 G A NEK9 Silent p.I653I 0.18 TCGA-EE-A29D-06 14 77715665 77715665 G A TMEM63C Silent p.T634T 0.37 TCGA-EE-A29D-06 14 77896033 77896033 G A VIPAS39 Silent p.A419A 0.27 TCGA-EE-A29D-06 14 79434659 79434659 C T NRXN3 Missense_Mutation p.R665W 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A29D-06 14 86088141 86088141 C T FLRT2 Silent p.L95L 0.18 TCGA-EE-A29D-06 14 86088162 86088162 G A FLRT2 Missense_Mutation p.E102K 0.24 deleterious(0) possibly_damaging(0.899) TCGA-EE-A29D-06 14 86088739 86088739 G A FLRT2 Missense_Mutation p.G294E 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 14 86089314 86089314 C T FLRT2 Nonsense_Mutation p.R486* 0.20 TCGA-EE-A29D-06 14 86089701 86089701 G A FLRT2 Missense_Mutation p.D615N 0.23 tolerated(0.3) possibly_damaging(0.484) TCGA-EE-A29D-06 14 88652080 88652080 G A KCNK10 Silent p.I477I 0.46 TCGA-EE-A29D-06 14 88789148 88789148 C T KCNK10 5'UTR 0.16 TCGA-EE-A29D-06 14 90754901 90754901 G A NRDE2 Missense_Mutation p.P940S 0.34 tolerated(0.44) benign(0.001) TCGA-EE-A29D-06 14 90755409 90755409 G A NRDE2 Silent p.L770L 0.31 TCGA-EE-A29D-06 14 90759093 90759093 G T NRDE2 Missense_Mutation p.P597H 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 90871084 90871084 T C CALM1 3'UTR 0.27 TCGA-EE-A29D-06 14 91681763 91681763 G A C14orf159 Missense_Mutation p.G527R 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 14 91738999 91738999 C T CCDC88C Silent p.Q2019Q 0.21 TCGA-EE-A29D-06 14 91755460 91755460 G A CCDC88C Missense_Mutation p.S1477F 0.19 deleterious(0.04) benign(0.187) TCGA-EE-A29D-06 14 92140529 92140529 G A CATSPERB Silent p.T323T 0.22 TCGA-EE-A29D-06 14 92159533 92159533 G A CATSPERB Silent p.I256I 0.35 TCGA-EE-A29D-06 14 92251571 92251571 C T TC2N Missense_Mutation p.E433K 0.21 tolerated(0.49) benign(0.102) TCGA-EE-A29D-06 14 93483031 93483031 T C ITPK1 Missense_Mutation p.H79R 0.38 tolerated(0.32) benign(0) TCGA-EE-A29D-06 14 93708899 93708899 G A BTBD7 Missense_Mutation p.P1040L 0.24 tolerated_low_confidence(0.2) benign(0) TCGA-EE-A29D-06 14 94048616 94048616 G A UNC79 Missense_Mutation p.G733E 0.26 tolerated(0.06) possibly_damaging(0.736) TCGA-EE-A29D-06 14 94088532 94088532 G A UNC79 Silent p.T1474T 0.15 TCGA-EE-A29D-06 14 94158136 94158136 C T UNC79 Silent p.I2300I 0.13 TCGA-EE-A29D-06 14 94391689 94391689 G A FAM181A Silent p.G24G 0.30 TCGA-EE-A29D-06 14 94718122 94718122 G A PPP4R4 Missense_Mutation p.R585Q 0.44 tolerated(0.2) possibly_damaging(0.906) TCGA-EE-A29D-06 14 94756953 94756953 G A SERPINA10 5'UTR 0.26 TCGA-EE-A29D-06 14 94844759 94844759 G A SERPINA1 3'UTR 0.22 TCGA-EE-A29D-06 14 94844760 94844760 G A SERPINA1 3'UTR 0.23 TCGA-EE-A29D-06 14 94849304 94849304 C T SERPINA1 Missense_Mutation p.G91R 0.33 deleterious(0) probably_damaging(0.99) TCGA-EE-A29D-06 14 94909542 94909542 G A SERPINA11 Missense_Mutation p.P313L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 14 94912739 94912739 C T SERPINA11 Silent p.G282G 0.45 TCGA-EE-A29D-06 14 94915035 94915035 C T SERPINA11 Missense_Mutation p.G26E 0.36 tolerated(0.54) benign(0.017) TCGA-EE-A29D-06 14 94955960 94955960 G C SERPINA12 Silent p.G350G 0.21 TCGA-EE-A29D-06 14 95562608 95562608 G A DICER1 Missense_Mutation p.T1550I 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 14 95670554 95670554 C T CLMN Missense_Mutation p.E378K 0.29 deleterious(0) benign(0.382) TCGA-EE-A29D-06 14 95906269 95906269 G A SYNE3 Silent p.S685S 0.23 TCGA-EE-A29D-06 14 96180332 96180332 G A TCL1A Silent p.F24F 0.37 TCGA-EE-A29D-06 14 96706662 96706662 C T BDKRB2 Intron 0.26 TCGA-EE-A29D-06 14 96800166 96800166 G A ATG2B Nonsense_Mutation p.R356* 0.27 TCGA-EE-A29D-06 14 96813607 96813607 G A ATG2B Silent p.S78S 0.35 TCGA-EE-A29D-06 14 96848752 96848752 C T GSKIP Silent p.S56S 0.18 TCGA-EE-A29D-06 14 96924441 96924441 G A AK7 Missense_Mutation p.D417N 0.33 deleterious(0.04) benign(0.386) TCGA-EE-A29D-06 14 99723978 99723978 C T BCL11B Missense_Mutation p.G86D 0.11 deleterious(0.04) benign(0) TCGA-EE-A29D-06 14 99961966 99961966 G A CCNK Silent p.K137K 0.19 TCGA-EE-A29D-06 15 100331064 100331064 G A AC090825.1 5'Flank 0.41 TCGA-EE-A29D-06 15 101565009 101565009 T C LRRK1 Missense_Mutation p.V690A 0.47 tolerated(0.11) possibly_damaging(0.491) TCGA-EE-A29D-06 15 101589973 101589973 G T LRRK1 Missense_Mutation p.D1142Y 0.46 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 15 102346710 102346710 C T OR4F6 Missense_Mutation p.P263L 0.08 deleterious_low_confidence(0.03) benign(0.046) TCGA-EE-A29D-06 15 20588710 20588710 C T HERC2P3 Splice_Site 0.08 TCGA-EE-A29D-06 15 20649486 20649486 C T HERC2P3 RNA 0.14 TCGA-EE-A29D-06 15 22368644 22368644 C T OR4M2 Silent p.V23V 0.08 TCGA-EE-A29D-06 15 22383097 22383097 C T OR4N4 Silent p.L209L 0.19 TCGA-EE-A29D-06 15 22473054 22473054 G A IGHV4OR15-8 Missense_Mutation p.H73Y 0.06 tolerated(1) benign(0) TCGA-EE-A29D-06 15 22711466 22711466 C T RN7SL545P 5'Flank 0.54 TCGA-EE-A29D-06 15 22861907 22861907 G A TUBGCP5 Missense_Mutation p.D643N 0.18 deleterious(0) possibly_damaging(0.644) TCGA-EE-A29D-06 15 22993144 22993144 G A CYFIP1 Missense_Mutation p.E1011K 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 15 23931842 23931842 C T NDN Missense_Mutation p.E175K 0.39 deleterious(0.01) possibly_damaging(0.772) TCGA-EE-A29D-06 15 24921237 24921237 C T NPAP1 Missense_Mutation p.P75S 0.20 tolerated(0.32) possibly_damaging(0.803) TCGA-EE-A29D-06 15 24921327 24921327 C T NPAP1 Missense_Mutation p.P105S 0.18 tolerated(0.94) benign(0.093) TCGA-EE-A29D-06 15 24921892 24921892 C T NPAP1 Missense_Mutation p.P293L 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A29D-06 15 24921945 24921945 C T NPAP1 Missense_Mutation p.P311S 0.38 tolerated(0.31) probably_damaging(0.924) TCGA-EE-A29D-06 15 24922658 24922658 G A NPAP1 Missense_Mutation p.M548I 0.30 tolerated(1) benign(0.013) TCGA-EE-A29D-06 15 24923640 24923640 C T NPAP1 Missense_Mutation p.P876S 0.47 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A29D-06 15 24923695 24923695 G A NPAP1 Missense_Mutation p.G894E 0.51 tolerated(0.64) benign(0) TCGA-EE-A29D-06 15 25342814 25342814 C T SNORD116-25 RNA 0.38 TCGA-EE-A29D-06 15 25430836 25430836 C T SNORD115-9 RNA 0.20 TCGA-EE-A29D-06 15 25451216 25451216 C T SNORD115-22 5'Flank 0.25 TCGA-EE-A29D-06 15 25458849 25458849 C T SNORD115-24 RNA 0.41 TCGA-EE-A29D-06 15 25479440 25479440 T C SNORD115-35 RNA 0.37 TCGA-EE-A29D-06 15 25492404 25492404 C T SNORD115-40 3'Flank 0.53 TCGA-EE-A29D-06 15 28447509 28447509 A T HERC2 Missense_Mutation p.N2488K 0.52 benign(0.01) TCGA-EE-A29D-06 15 31664399 31664399 G A KLF13 Missense_Mutation p.G255E 0.39 tolerated(0.06) probably_damaging(0.931) TCGA-EE-A29D-06 15 33941313 33941313 C T RYR3 Missense_Mutation p.P1340L 0.57 probably_damaging(0.996) TCGA-EE-A29D-06 15 33954667 33954667 G A RYR3 Missense_Mutation p.E1646K 0.16 benign(0.002) TCGA-EE-A29D-06 15 33991977 33991977 C T RYR3 Nonsense_Mutation p.Q2108* 0.58 TCGA-EE-A29D-06 15 34042387 34042387 G A RYR3 Missense_Mutation p.V2767I 0.22 possibly_damaging(0.798) TCGA-EE-A29D-06 15 34060901 34060901 C T RYR3 Silent p.S2916S 0.10 TCGA-EE-A29D-06 15 34077984 34077984 C T RYR3 Silent p.V3130V 0.28 TCGA-EE-A29D-06 15 34150116 34150116 G A RYR3 Splice_Site p.X4714_splice 0.27 TCGA-EE-A29D-06 15 34635302 34635302 T C NOP10 5'UTR 0.51 TCGA-EE-A29D-06 15 34647767 34647767 G A NUTM1 Missense_Mutation p.D492N 0.46 tolerated(0.06) benign(0.078) TCGA-EE-A29D-06 15 34673710 34673710 G A GOLGA8A Missense_Mutation p.L572F 0.24 deleterious(0.01) benign(0.02) TCGA-EE-A29D-06 15 35045159 35045159 C T GJD2 Silent p.K162K 0.23 TCGA-EE-A29D-06 15 35530214 35530214 G A ANP32AP1 RNA 0.24 TCGA-EE-A29D-06 15 38800089 38800089 C T RASGRP1 Silent p.K360K 0.19 TCGA-EE-A29D-06 15 38804981 38804981 C T RASGRP1 Intron 0.43 TCGA-EE-A29D-06 15 39875835 39875835 G A THBS1 Silent p.V215V 0.31 TCGA-EE-A29D-06 15 39886529 39886529 C T THBS1 Silent p.I1131I 0.38 TCGA-EE-A29D-06 15 40494625 40494625 C T BUB1B Silent p.S529S 0.40 TCGA-EE-A29D-06 15 40661288 40661288 C T DISP2 Missense_Mutation p.S992F 0.28 deleterious(0) possibly_damaging(0.681) TCGA-EE-A29D-06 15 40661289 40661289 C T DISP2 Silent p.S992S 0.28 TCGA-EE-A29D-06 15 40855196 40855196 C T C15orf57 Missense_Mutation p.A16T 0.24 tolerated(0.08) benign(0.013) TCGA-EE-A29D-06 15 41820156 41820156 G A RPAP1 Missense_Mutation p.L444F 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 15 42000019 42000019 C T MGA Missense_Mutation p.P761L 0.45 tolerated(0.18) benign(0.066) TCGA-EE-A29D-06 15 42034999 42034999 C T MGA Missense_Mutation p.P1614L 0.15 deleterious(0.04) benign(0.195) TCGA-EE-A29D-06 15 42132776 42132776 G A PLA2G4B Missense_Mutation p.R277K 0.42 tolerated(1) benign(0.008) TCGA-EE-A29D-06 15 42146303 42146303 C T SPTBN5 Missense_Mutation p.G3240E 0.27 benign(0.108) TCGA-EE-A29D-06 15 42287590 42287590 G A PLA2G4E Silent p.A405A 0.43 TCGA-EE-A29D-06 15 42371884 42371884 C T PLA2G4D Missense_Mutation p.E390K 0.46 tolerated(1) benign(0.011) TCGA-EE-A29D-06 15 42379548 42379548 G A PLA2G4D Missense_Mutation p.H69Y 0.43 deleterious(0.02) possibly_damaging(0.722) TCGA-EE-A29D-06 15 42703483 42703483 A G CAPN3 Splice_Site p.X794_splice 0.16 TCGA-EE-A29D-06 15 43351289 43351289 A G UBR1 Missense_Mutation p.Y363H 0.48 tolerated(0.17) benign(0.001) TCGA-EE-A29D-06 15 43494147 43494147 G A EPB42 Missense_Mutation p.P633L 0.23 tolerated(0.07) benign(0.386) TCGA-EE-A29D-06 15 43585714 43585714 G A TGM7 Silent p.Y42Y 0.40 TCGA-EE-A29D-06 15 43714177 43714177 G A TP53BP1 Missense_Mutation p.L1326F 0.15 tolerated(0.37) probably_damaging(0.988) TCGA-EE-A29D-06 15 43813932 43813932 C A MAP1A Silent p.L87L 0.41 TCGA-EE-A29D-06 15 43815199 43815199 G A MAP1A Missense_Mutation p.G510R 0.16 probably_damaging(0.976) TCGA-EE-A29D-06 15 43817595 43817595 G A MAP1A Silent p.A1308A 0.51 TCGA-EE-A29D-06 15 43821160 43821160 G A MAP1A Missense_Mutation p.E2497K 0.42 probably_damaging(0.996) TCGA-EE-A29D-06 15 43827033 43827033 G A PPIP5K1 Nonsense_Mutation p.Q1381* 0.35 TCGA-EE-A29D-06 15 43891529 43891529 G A CKMT1B 3'UTR 0.27 TCGA-EE-A29D-06 15 43891530 43891530 G A CKMT1B 3'UTR 0.29 TCGA-EE-A29D-06 15 43939270 43939270 C T CATSPER2 Silent p.T122T 0.46 TCGA-EE-A29D-06 15 44116843 44116843 A G MFAP1 5'UTR 0.44 TCGA-EE-A29D-06 15 45392024 45392024 C T DUOX2 Missense_Mutation p.R1084Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 15 45394076 45394076 C T DUOX2 Silent p.E922E 0.32 TCGA-EE-A29D-06 15 45401769 45401769 G A DUOX2 Missense_Mutation p.S396F 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 15 45439720 45439720 G A DUOX1 Silent p.R804R 0.44 TCGA-EE-A29D-06 15 45464451 45464451 G A SHF Missense_Mutation p.P287S 0.36 tolerated(0.67) benign(0.021) TCGA-EE-A29D-06 15 45781181 45781181 G A SLC30A4 Missense_Mutation p.S251L 0.29 tolerated(0.18) benign(0.345) TCGA-EE-A29D-06 15 48703270 48703270 G A FBN1 Silent p.L2845L 0.45 TCGA-EE-A29D-06 15 48760186 48760186 G A FBN1 Silent p.L1566L 0.15 TCGA-EE-A29D-06 15 49860536 49860536 C T FAM227B Missense_Mutation p.R218K 0.34 tolerated(0.34) benign(0.052) TCGA-EE-A29D-06 15 50540510 50540510 G A HDC Missense_Mutation p.R358C 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 15 51676017 51676017 G A GLDN Missense_Mutation p.G157R 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 15 51687033 51687033 G A GLDN Silent p.G181G 0.18 TCGA-EE-A29D-06 15 51980459 51980459 G A SCG3 Missense_Mutation p.D134N 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 15 54306742 54306742 C T UNC13C Missense_Mutation p.R548C 0.42 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-EE-A29D-06 15 54542603 54542603 G A UNC13C Missense_Mutation p.E1137K 0.21 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-EE-A29D-06 15 54919113 54919113 C T UNC13C Silent p.I2149I 0.27 TCGA-EE-A29D-06 15 55497788 55497788 G A RAB27A Missense_Mutation p.P195S 0.13 tolerated(0.13) possibly_damaging(0.551) TCGA-EE-A29D-06 15 56141063 56141063 G A NEDD4 Missense_Mutation p.P804S 0.41 tolerated(0.09) possibly_damaging(0.612) TCGA-EE-A29D-06 15 57734665 57734665 G A CGNL1 Missense_Mutation p.G598R 0.13 deleterious(0.02) possibly_damaging(0.526) TCGA-EE-A29D-06 15 57896515 57896515 C T MYZAP Missense_Mutation p.P42S 0.45 tolerated(0.35) benign(0.004) TCGA-EE-A29D-06 15 59373233 59373233 T C RNF111 Missense_Mutation p.Y683H 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 15 59499593 59499593 G A LDHAL6B Missense_Mutation p.G152R 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29D-06 15 60745781 60745781 G A NARG2 Intron 0.37 TCGA-EE-A29D-06 15 62173982 62173982 G A VPS13C Missense_Mutation p.P3224S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 15 62538816 62538816 C T AC126323.1 5'Flank 0.70 TCGA-EE-A29D-06 15 62986583 62986583 C T TLN2 Silent p.S428S 0.29 TCGA-EE-A29D-06 15 62994231 62994231 G A TLN2 Silent p.A579A 0.35 TCGA-EE-A29D-06 15 63421913 63421913 A G LACTB Intron 0.21 TCGA-EE-A29D-06 15 63922670 63922670 C T HERC1 Missense_Mutation p.G4321R 0.21 probably_damaging(1) TCGA-EE-A29D-06 15 64050543 64050543 G A HERC1 Missense_Mutation p.S351L 0.21 benign(0.038) TCGA-EE-A29D-06 15 65040711 65040711 G A RBPMS2 Silent p.Y158Y 0.25 TCGA-EE-A29D-06 15 65443056 65443056 G A CLPX 3'UTR 0.31 TCGA-EE-A29D-06 15 65494363 65494363 G A CILP Missense_Mutation p.H345Y 0.25 deleterious(0.01) benign(0.006) TCGA-EE-A29D-06 15 65931988 65931988 T G SLC24A1 Missense_Mutation p.I667S 0.29 benign(0.012) TCGA-EE-A29D-06 15 69080189 69080189 C A ANP32A Nonsense_Mutation p.E42* 0.59 TCGA-EE-A29D-06 15 69238782 69238782 G A SPESP1 Silent p.L303L 0.50 TCGA-EE-A29D-06 15 69324055 69324055 G A NOX5 Missense_Mutation p.E175K 0.31 deleterious(0.04) benign(0.269) TCGA-EE-A29D-06 15 69672237 69672237 G A PAQR5 Missense_Mutation p.G23S 0.42 tolerated(0.18) benign(0.082) TCGA-EE-A29D-06 15 70991893 70991893 C T UACA Missense_Mutation p.G62D 0.26 tolerated(0.07) possibly_damaging(0.772) TCGA-EE-A29D-06 15 72020948 72020948 G A THSD4 Missense_Mutation p.G473E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 15 72119267 72119267 G A MYO9A Missense_Mutation p.S2434F 0.25 tolerated_low_confidence(0.16) possibly_damaging(0.613) TCGA-EE-A29D-06 15 72502197 72502197 C T PKM Missense_Mutation p.G128S 0.14 tolerated(0.13) benign(0.025) TCGA-EE-A29D-06 15 72968622 72968622 G A HIGD2B Missense_Mutation p.P32S 0.54 tolerated(0.56) benign(0.004) TCGA-EE-A29D-06 15 73016891 73016891 C T BBS4 Missense_Mutation p.A161V 0.25 deleterious(0.04) possibly_damaging(0.764) TCGA-EE-A29D-06 15 73590890 73590890 C T NEO1 Missense_Mutation p.P1368L 0.49 deleterious(0) probably_damaging(0.946) TCGA-EE-A29D-06 15 73996051 73996051 C T CD276 Missense_Mutation p.T262I 0.13 tolerated(0.18) benign(0.094) TCGA-EE-A29D-06 15 74368317 74368317 A G GOLGA6A Missense_Mutation p.C192R 0.10 tolerated(0.45) benign(0.001) TCGA-EE-A29D-06 15 74623558 74623558 G A CCDC33 Missense_Mutation p.M564I 0.22 deleterious(0) possibly_damaging(0.584) TCGA-EE-A29D-06 15 75116727 75116727 G A LMAN1L Silent p.Q453Q 0.45 TCGA-EE-A29D-06 15 75122526 75122526 G A CPLX3 Missense_Mutation p.R103Q 0.42 tolerated(0.29) benign(0.061) TCGA-EE-A29D-06 15 75305141 75305141 G A SCAMP5 Nonsense_Mutation p.W44* 0.45 TCGA-EE-A29D-06 15 77474085 77474085 G A PEAK1 Missense_Mutation p.R62W 0.49 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 15 78873221 78873221 G A CHRNA5 Missense_Mutation p.E59K 0.58 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29D-06 15 79227365 79227365 C A CTSH Silent p.V120V 0.39 TCGA-EE-A29D-06 15 80429888 80429888 C T ZFAND6 Missense_Mutation p.S182F 0.27 deleterious(0.03) benign(0.16) TCGA-EE-A29D-06 15 80467368 80467368 C T FAH Missense_Mutation p.P283L 0.28 deleterious(0.05) probably_damaging(0.987) TCGA-EE-A29D-06 15 81641868 81641868 G A TMC3 Missense_Mutation p.S375L 0.22 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A29D-06 15 81660637 81660637 C T TMC3 Missense_Mutation p.G90E 0.39 deleterious(0) probably_damaging(0.98) TCGA-EE-A29D-06 15 82520636 82520636 G A EFTUD1 Missense_Mutation p.S322F 0.22 deleterious(0) probably_damaging(0.951) TCGA-EE-A29D-06 15 83936900 83936900 C T BNC1 Missense_Mutation p.G62R 0.51 deleterious(0) probably_damaging(0.961) TCGA-EE-A29D-06 15 84233937 84233937 G A SH3GL3 Missense_Mutation p.E56K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 15 85341193 85341193 C T ZNF592 Silent p.F831F 0.09 TCGA-EE-A29D-06 15 85406053 85406053 C T ALPK3 Silent p.G1641G 0.61 TCGA-EE-A29D-06 15 85407716 85407716 C T ALPK3 Missense_Mutation p.P1717S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 15 88678460 88678460 G A NTRK3 Missense_Mutation p.S359F 0.27 deleterious(0.04) benign(0.158) TCGA-EE-A29D-06 15 89151413 89151413 C T MIR1179 RNA 0.52 TCGA-EE-A29D-06 15 89453037 89453037 T C MFGE8 Missense_Mutation p.N64S 0.52 tolerated(0.57) benign(0.002) TCGA-EE-A29D-06 15 89816644 89816644 C T FANCI Missense_Mutation p.P307S 0.34 deleterious(0.03) benign(0.251) TCGA-EE-A29D-06 15 90170247 90170247 C T TICRR Missense_Mutation p.S1888F 0.23 deleterious(0.04) probably_damaging(0.973) TCGA-EE-A29D-06 15 90213292 90213292 C T PLIN1 Missense_Mutation p.A173T 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 15 90348321 90348321 G A ANPEP Silent p.S295S 0.31 TCGA-EE-A29D-06 15 90447118 90447118 G A C15orf38-AP3S2 Silent p.T133T 0.41 TCGA-EE-A29D-06 15 90892029 90892029 C T GABARAPL3 3'UTR 0.46 TCGA-EE-A29D-06 15 91456115 91456115 C T MAN2A2 Silent p.V826V 0.37 TCGA-EE-A29D-06 15 91811757 91811757 G A SV2B Missense_Mutation p.G432D 0.29 tolerated(0.72) benign(0.003) TCGA-EE-A29D-06 15 94841751 94841751 G A MCTP2 Missense_Mutation p.G86E 0.20 tolerated(0.17) benign(0.039) TCGA-EE-A29D-06 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.26 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A29D-06 16 10274037 10274037 C T GRIN2A Missense_Mutation p.D78N 0.18 tolerated(0.66) probably_damaging(0.999) TCGA-EE-A29D-06 16 10788365 10788365 G A TEKT5 Silent p.L122L 0.63 TCGA-EE-A29D-06 16 10996525 10996525 C T CIITA Silent p.S213S 0.20 TCGA-EE-A29D-06 16 11038592 11038592 G A CLEC16A Silent p.R6R 0.45 TCGA-EE-A29D-06 16 11785885 11785885 C G TXNDC11 Missense_Mutation p.E387D 0.26 tolerated(0.19) benign(0.05) TCGA-EE-A29D-06 16 11980332 11980332 A T GSPT1 Missense_Mutation p.Y417N 0.30 deleterious(0.05) benign(0.315) TCGA-EE-A29D-06 16 12009907 12009907 C T GSPT1 5'Flank 0.35 TCGA-EE-A29D-06 16 1270215 1270215 G A CACNA1H Missense_Mutation p.D2095N 0.50 tolerated(0.06) possibly_damaging(0.765) TCGA-EE-A29D-06 16 1270844 1270844 A G CACNA1H Silent p.E2304E 0.27 TCGA-EE-A29D-06 16 15141896 15141896 A T NTAN1 Missense_Mutation p.Y48N 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 16 1535945 1535945 G A PTX4 Missense_Mutation p.P473S 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29D-06 16 15811070 15811070 T C MYH11 Missense_Mutation p.K1818E 0.28 probably_damaging(0.925) TCGA-EE-A29D-06 16 16139753 16139753 C T ABCC1 Silent p.T367T 0.24 TCGA-EE-A29D-06 16 16177243 16177243 A T ABCC1 Silent p.P712P 0.25 TCGA-EE-A29D-06 16 16271479 16271479 C T ABCC6 Missense_Mutation p.R807Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 16 16291899 16291899 G A ABCC6 Silent p.V439V 0.14 TCGA-EE-A29D-06 16 16349603 16349603 C T NOMO3 Silent p.S330S 0.53 TCGA-EE-A29D-06 16 17235193 17235193 G A XYLT1 Silent p.F468F 0.36 TCGA-EE-A29D-06 16 17353332 17353332 C T XYLT1 Silent p.P142P 0.28 TCGA-EE-A29D-06 16 1813756 1813756 G T MAPK8IP3 Missense_Mutation p.G665V 0.75 deleterious(0) probably_damaging(0.955) TCGA-EE-A29D-06 16 1859392 1859392 G A HAGH Intron 0.32 TCGA-EE-A29D-06 16 19020603 19020603 G A TMC7 Silent p.R59R 0.41 TCGA-EE-A29D-06 16 19067875 19067875 C T TMC7 Missense_Mutation p.S628L 0.42 deleterious(0) probably_damaging(0.975) TCGA-EE-A29D-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.31 deleterious(0.03) benign(0.001) TCGA-EE-A29D-06 16 1961845 1961845 C T HS3ST6 Missense_Mutation p.E228K 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29D-06 16 2012119 2012119 G A RPS2 Missense_Mutation p.P288S 0.71 deleterious(0.02) benign(0.017) TCGA-EE-A29D-06 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.61 deleterious(0) possibly_damaging(0.505) TCGA-EE-A29D-06 16 20410537 20410537 G A PDILT Missense_Mutation p.S29F 0.57 deleterious(0.05) benign(0.26) TCGA-EE-A29D-06 16 2049799 2049799 G A ZNF598 Missense_Mutation p.P584L 0.19 benign(0.098) TCGA-EE-A29D-06 16 20548547 20548547 G A ACSM2B 3'UTR 0.26 TCGA-EE-A29D-06 16 20559468 20559468 C T ACSM2B Silent p.G338G 0.31 TCGA-EE-A29D-06 16 20559469 20559469 C T ACSM2B Missense_Mutation p.G338E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 16 20570759 20570759 C T ACSM2B Missense_Mutation p.R63Q 0.33 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A29D-06 16 20803432 20803432 G A ACSM3 Missense_Mutation p.D479N 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.53 tolerated(0.09) benign(0.052) TCGA-EE-A29D-06 16 20975264 20975264 G A DNAH3 Silent p.I3314I 0.23 TCGA-EE-A29D-06 16 20975447 20975447 G A DNAH3 Silent p.I3253I 0.58 TCGA-EE-A29D-06 16 21063005 21063005 G A DNAH3 Silent p.T1408T 0.57 TCGA-EE-A29D-06 16 21063006 21063006 G A DNAH3 Missense_Mutation p.T1408I 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 16 21213293 21213293 C T ZP2 Missense_Mutation p.D447N 0.44 tolerated(0.22) benign(0.097) TCGA-EE-A29D-06 16 21213294 21213294 C T ZP2 Silent p.T446T 0.44 TCGA-EE-A29D-06 16 21215695 21215695 G A ZP2 Silent p.L242L 0.56 TCGA-EE-A29D-06 16 21261738 21261738 C T ANKS4B Missense_Mutation p.P284L 0.33 tolerated(0.38) benign(0.001) TCGA-EE-A29D-06 16 2140797 2140797 G A PKD1 Silent p.L4006L 0.31 TCGA-EE-A29D-06 16 2161121 2161121 G A PKD1 Silent p.F1349F 0.37 TCGA-EE-A29D-06 16 22142976 22142976 G A VWA3A Missense_Mutation p.D600N 0.56 deleterious(0.03) possibly_damaging(0.819) TCGA-EE-A29D-06 16 22162153 22162153 G A VWA3A Silent p.L1089L 0.25 TCGA-EE-A29D-06 16 23083400 23083400 G A USP31 Silent p.S818S 0.32 TCGA-EE-A29D-06 16 23226620 23226620 C T SCNN1G Missense_Mutation p.P594S 0.27 tolerated(0.87) possibly_damaging(0.619) TCGA-EE-A29D-06 16 23391491 23391491 G C SCNN1B Splice_Site p.X514_splice 0.25 TCGA-EE-A29D-06 16 23444964 23444964 C T COG7 Missense_Mutation p.E238K 0.29 tolerated(0.35) benign(0.016) TCGA-EE-A29D-06 16 23767427 23767427 C T CHP2 Missense_Mutation p.H89Y 0.56 deleterious(0.05) benign(0.028) TCGA-EE-A29D-06 16 23768865 23768865 G A CHP2 Missense_Mutation p.M184I 0.26 tolerated(0.14) benign(0.075) TCGA-EE-A29D-06 16 23768866 23768866 G A CHP2 Missense_Mutation p.D185N 0.25 tolerated(0.37) benign(0.001) TCGA-EE-A29D-06 16 24372940 24372940 C T CACNG3 Missense_Mutation p.S235L 0.55 deleterious(0.02) possibly_damaging(0.722) TCGA-EE-A29D-06 16 24372964 24372964 G A CACNG3 Missense_Mutation p.R243K 0.57 tolerated(0.7) benign(0.098) TCGA-EE-A29D-06 16 24372970 24372970 G A CACNG3 Missense_Mutation p.R245Q 0.31 tolerated(0.05) possibly_damaging(0.722) TCGA-EE-A29D-06 16 24801472 24801472 C T TNRC6A Silent p.S503S 0.60 TCGA-EE-A29D-06 16 249084 249084 G A LUC7L Nonsense_Mutation p.R222* 0.28 TCGA-EE-A29D-06 16 25251886 25251886 C T ZKSCAN2 Missense_Mutation p.G719R 0.41 tolerated(0.36) benign(0.009) TCGA-EE-A29D-06 16 2569620 2569620 G A ATP6V0C Silent p.G114G 0.59 TCGA-EE-A29D-06 16 26147155 26147155 G A HS3ST4 Silent p.R319R 0.30 TCGA-EE-A29D-06 16 26147178 26147178 C T HS3ST4 Missense_Mutation p.S327F 0.58 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 16 27268900 27268900 G A NSMCE1 Intron 0.31 TCGA-EE-A29D-06 16 27456587 27456587 C T IL21R Missense_Mutation p.P259S 0.30 tolerated(0.11) benign(0.029) TCGA-EE-A29D-06 16 27720136 27720136 C T KIAA0556 Silent p.F500F 0.26 TCGA-EE-A29D-06 16 28115990 28115990 G A XPO6 Silent p.L941L 0.18 TCGA-EE-A29D-06 16 28157510 28157510 A G XPO6 Silent p.G413G 0.64 TCGA-EE-A29D-06 16 28331744 28331744 C T SBK1 Silent p.A259A 0.22 TCGA-EE-A29D-06 16 28620211 28620211 C T SULT1A1 Intron 0.35 TCGA-EE-A29D-06 16 29816468 29816468 G A KIF22 Silent p.T641T 0.27 TCGA-EE-A29D-06 16 29899001 29899001 C T SEZ6L2 Missense_Mutation p.E393K 0.29 deleterious(0) probably_damaging(0.983) TCGA-EE-A29D-06 16 29994069 29994069 C T TAOK2 Silent p.L282L 0.51 TCGA-EE-A29D-06 16 29994070 29994070 C T TAOK2 Missense_Mutation p.R283W 0.51 deleterious(0) probably_damaging(0.952) TCGA-EE-A29D-06 16 30035385 30035385 C T C16orf92 Missense_Mutation p.L119F 0.34 deleterious(0.04) probably_damaging(0.934) TCGA-EE-A29D-06 16 30040821 30040821 G A FAM57B Silent p.V47V 0.19 TCGA-EE-A29D-06 16 30409820 30409820 C T ZNF48 Missense_Mutation p.P417S 0.31 tolerated(0.49) probably_damaging(0.996) TCGA-EE-A29D-06 16 304634 304634 C T ITFG3 Silent p.D74D 0.32 TCGA-EE-A29D-06 16 3063628 3063628 C T CLDN9 Silent p.L89L 0.26 TCGA-EE-A29D-06 16 30676392 30676392 C T FBRS Nonsense_Mutation p.R534* 0.21 TCGA-EE-A29D-06 16 30721875 30721875 C T SRCAP Intron 0.64 TCGA-EE-A29D-06 16 30750077 30750077 C T SRCAP Missense_Mutation p.P2906S 0.53 unknown(0) TCGA-EE-A29D-06 16 3077381 3077381 C T THOC6 Silent p.G275G 0.44 TCGA-EE-A29D-06 16 3077382 3077382 C T THOC6 Nonsense_Mutation p.Q276* 0.43 TCGA-EE-A29D-06 16 30779804 30779804 C A RNF40 Silent p.T644T 0.21 TCGA-EE-A29D-06 16 30975992 30975992 C T SETD1A Missense_Mutation p.S310F 0.39 possibly_damaging(0.737) TCGA-EE-A29D-06 16 30976972 30976972 G A SETD1A Silent p.R590R 0.26 TCGA-EE-A29D-06 16 30982813 30982813 C T SETD1A Missense_Mutation p.S1044F 0.21 unknown(0) TCGA-EE-A29D-06 16 3115726 3115726 G A IL32 Intron 0.29 TCGA-EE-A29D-06 16 31284775 31284775 C T ITGAM Missense_Mutation p.P265L 0.42 tolerated(0.08) possibly_damaging(0.877) TCGA-EE-A29D-06 16 31332834 31332834 G A ITGAM Missense_Mutation p.E631K 0.60 tolerated(0.08) benign(0.172) TCGA-EE-A29D-06 16 31383061 31383061 C T ITGAX Missense_Mutation p.L706F 0.32 tolerated(0.07) benign(0.258) TCGA-EE-A29D-06 16 3139278 3139278 C T ZSCAN10 Silent p.Q664Q 0.36 TCGA-EE-A29D-06 16 3165421 3165421 G A ZNF205 Silent p.G41G 0.25 TCGA-EE-A29D-06 16 31926743 31926743 T A ZNF267 Silent p.R391R 0.49 TCGA-EE-A29D-06 16 339520 339520 G A AXIN1 Silent p.I794I 0.28 TCGA-EE-A29D-06 16 343565 343565 G A AXIN1 Silent p.P703P 0.28 TCGA-EE-A29D-06 16 3487421 3487421 G A ZNF597 Missense_Mutation p.S93F 0.58 tolerated(0.12) benign(0.011) TCGA-EE-A29D-06 16 3786113 3786113 T C CREBBP Missense_Mutation p.E1551G 0.19 unknown(0) TCGA-EE-A29D-06 16 4042326 4042326 G A ADCY9 Silent p.L676L 0.25 TCGA-EE-A29D-06 16 457472 457472 C T DECR2 Silent p.L83L 0.33 TCGA-EE-A29D-06 16 46731411 46731411 G A ORC6 Missense_Mutation p.D225N 0.80 tolerated(0.33) benign(0.005) TCGA-EE-A29D-06 16 4732940 4732940 C T MGRN1 Missense_Mutation p.S492F 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.564) TCGA-EE-A29D-06 16 47730372 47730372 G A PHKB Silent p.Q992Q 0.18 TCGA-EE-A29D-06 16 48138177 48138177 G A ABCC12 Missense_Mutation p.H926Y 0.27 tolerated(1) benign(0.065) TCGA-EE-A29D-06 16 48218400 48218400 G A ABCC11 Missense_Mutation p.S1070F 0.95 tolerated(0.07) benign(0.314) TCGA-EE-A29D-06 16 48227885 48227885 C T ABCC11 Missense_Mutation p.V805I 0.42 tolerated(0.24) benign(0.005) TCGA-EE-A29D-06 16 48242338 48242338 C T ABCC11 Missense_Mutation p.E560K 0.40 deleterious(0.02) possibly_damaging(0.767) TCGA-EE-A29D-06 16 49670875 49670875 C T ZNF423 Missense_Mutation p.D730N 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 16 50338452 50338452 G A ADCY7 Missense_Mutation p.R517Q 0.77 tolerated(0.43) benign(0.058) TCGA-EE-A29D-06 16 51174665 51174665 C T SALL1 Missense_Mutation p.G490R 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 16 53272436 53272436 C T CHD9 Missense_Mutation p.H939Y 0.43 probably_damaging(0.938) TCGA-EE-A29D-06 16 55725871 55725871 C T SLC6A2 Silent p.F275F 0.47 TCGA-EE-A29D-06 16 55860149 55860149 C T CES1 Missense_Mutation p.E107K 0.20 tolerated(0.12) benign(0.017) TCGA-EE-A29D-06 16 57003319 57003319 C T CETP Silent p.S85S 0.36 TCGA-EE-A29D-06 16 57005247 57005247 C T CETP Silent p.I204I 0.89 TCGA-EE-A29D-06 16 57608917 57608917 G A GPR114 Missense_Mutation p.G467R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 16 57693312 57693312 C T GPR56 Missense_Mutation p.P431L 0.25 tolerated(1) benign(0.032) TCGA-EE-A29D-06 16 57693313 57693313 C T GPR56 Silent p.P431P 0.25 TCGA-EE-A29D-06 16 57756644 57756644 G A CCDC135 Silent p.P433P 0.38 TCGA-EE-A29D-06 16 58314472 58314472 C T PRSS54 Missense_Mutation p.E282K 0.42 tolerated(0.07) benign(0.036) TCGA-EE-A29D-06 16 66545943 66545943 C T TK2 Silent p.E242E 0.34 TCGA-EE-A29D-06 16 66975531 66975531 C T CES2 Silent p.F410F 0.52 TCGA-EE-A29D-06 16 67322425 67322425 C T PLEKHG4 Missense_Mutation p.P1163L 0.32 tolerated(0.08) benign(0.009) TCGA-EE-A29D-06 16 677524 677524 G A RAB40C Missense_Mutation p.G250S 0.43 tolerated_low_confidence(0.64) benign(0.002) TCGA-EE-A29D-06 16 677525 677525 G A RAB40C Missense_Mutation p.G250D 0.43 tolerated_low_confidence(0.1) benign(0.076) TCGA-EE-A29D-06 16 68598512 68598512 C T ZFP90 Missense_Mutation p.P608S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 16 68844210 68844210 C T CDH1 Silent p.V266V 0.85 TCGA-EE-A29D-06 16 68934380 68934380 C T TANGO6 Missense_Mutation p.S474F 0.80 deleterious(0) possibly_damaging(0.482) TCGA-EE-A29D-06 16 69385549 69385549 G A TMED6 Silent p.F36F 0.29 TCGA-EE-A29D-06 16 70895992 70895992 G A HYDIN Silent p.S3912S 0.73 TCGA-EE-A29D-06 16 70916794 70916794 G A HYDIN Silent p.F3328F 0.73 TCGA-EE-A29D-06 16 70928372 70928372 C T HYDIN Silent p.G3076G 0.39 TCGA-EE-A29D-06 16 71061468 71061468 G A HYDIN Intron 0.82 TCGA-EE-A29D-06 16 71212857 71212857 G A HYDIN Missense_Mutation p.P119S 0.47 probably_damaging(0.954) TCGA-EE-A29D-06 16 72184533 72184533 C T PMFBP1 Missense_Mutation p.G204R 0.84 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A29D-06 16 72993058 72993058 G A ZFHX3 Silent p.I329I 0.40 TCGA-EE-A29D-06 16 7382902 7382902 C T RBFOX1 5'UTR 0.40 TCGA-EE-A29D-06 16 74425463 74425463 C T NPIPB15 Missense_Mutation p.P273S 0.30 deleterious_low_confidence(0.02) benign(0.426) TCGA-EE-A29D-06 16 74497348 74497348 G A GLG1 Silent p.T899T 0.48 TCGA-EE-A29D-06 16 74729448 74729448 C T MLKL Missense_Mutation p.E70K 0.57 tolerated(0.41) benign(0.013) TCGA-EE-A29D-06 16 75238062 75238062 G T CTRB2 Missense_Mutation p.N263K 0.80 deleterious(0.03) benign(0.227) TCGA-EE-A29D-06 16 75263823 75263823 T G BCAR1 Silent p.T779T 0.96 TCGA-EE-A29D-06 16 7568267 7568267 C T RBFOX1 Missense_Mutation p.A69V 0.27 deleterious(0.02) possibly_damaging(0.629) TCGA-EE-A29D-06 16 76481970 76481970 C T CNTNAP4 Silent p.S175S 0.90 TCGA-EE-A29D-06 16 76495858 76495858 G A CNTNAP4 Missense_Mutation p.E374K 0.40 deleterious(0.05) benign(0.093) TCGA-EE-A29D-06 16 77328972 77328972 G T ADAMTS18 Missense_Mutation p.Q952K 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29D-06 16 77850940 77850940 G A VAT1L Missense_Mutation p.G119E 0.44 tolerated(0.22) possibly_damaging(0.609) TCGA-EE-A29D-06 16 78064408 78064408 C T CLEC3A Silent p.F97F 0.81 TCGA-EE-A29D-06 16 80583473 80583473 C T DYNLRB2 Missense_Mutation p.R58C 0.37 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 16 81228577 81228577 C T PKD1L2 Missense_Mutation p.E61K 0.84 tolerated(0.15) benign(0.026) TCGA-EE-A29D-06 16 83636148 83636148 G A CDH13 Silent p.T397T 0.41 TCGA-EE-A29D-06 16 83781740 83781740 T C CDH13 Silent p.G569G 0.86 TCGA-EE-A29D-06 16 83992993 83992993 C T OSGIN1 Silent p.L66L 0.47 TCGA-EE-A29D-06 16 84028020 84028020 C T NECAB2 Missense_Mutation p.P237L 0.36 tolerated(0.69) benign(0.009) TCGA-EE-A29D-06 16 84228901 84228901 G A ADAD2 Missense_Mutation p.E327K 0.62 deleterious(0.04) possibly_damaging(0.833) TCGA-EE-A29D-06 16 847969 847969 G C CHTF18 Missense_Mutation p.L974F 0.31 deleterious(0.05) possibly_damaging(0.904) TCGA-EE-A29D-06 16 84906636 84906636 C T CRISPLD2 Silent p.I340I 0.88 TCGA-EE-A29D-06 16 85936518 85936518 C T IRF8 Intron 0.52 TCGA-EE-A29D-06 16 89785453 89785453 C T VPS9D1 Missense_Mutation p.E53K 0.91 deleterious(0) benign(0.257) TCGA-EE-A29D-06 17 10212947 10212947 C T MYH13 Silent p.K1619K 0.24 TCGA-EE-A29D-06 17 10219109 10219109 C T MYH13 Silent p.V1295V 0.27 TCGA-EE-A29D-06 17 10247409 10247409 G A MYH13 Silent p.S534S 0.69 TCGA-EE-A29D-06 17 10263382 10263382 T C MYH13 Silent p.E180E 0.17 TCGA-EE-A29D-06 17 10265528 10265528 C T MYH13 Missense_Mutation p.E138K 0.65 tolerated(0.08) benign(0.016) TCGA-EE-A29D-06 17 10265785 10265785 C T MYH13 Missense_Mutation p.M80I 0.24 deleterious(0.01) possibly_damaging(0.857) TCGA-EE-A29D-06 17 10315753 10315753 C T MYH8 Silent p.L450L 0.27 TCGA-EE-A29D-06 17 10370002 10370002 C T MYH4 Missense_Mutation p.E21K 0.65 deleterious(0.04) benign(0.361) TCGA-EE-A29D-06 17 10399779 10399779 C T MYH1 Missense_Mutation p.E1582K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 17 10404792 10404792 C T MYH1 Missense_Mutation p.E1125K 0.72 deleterious(0.03) possibly_damaging(0.617) TCGA-EE-A29D-06 17 10404958 10404958 C T MYH1 Missense_Mutation p.E1101K 0.69 deleterious(0.04) benign(0.099) TCGA-EE-A29D-06 17 10408246 10408246 C T MYH1 Missense_Mutation p.E858K 0.18 tolerated(0.07) benign(0.362) TCGA-EE-A29D-06 17 10411972 10411972 G A MYH1 Silent p.S535S 0.67 TCGA-EE-A29D-06 17 10431132 10431132 C T MYH2 Silent p.K1268K 0.42 TCGA-EE-A29D-06 17 10432708 10432708 C T MYH2 Missense_Mutation p.E1070K 0.22 deleterious(0.01) possibly_damaging(0.682) TCGA-EE-A29D-06 17 10432709 10432709 T A MYH2 Missense_Mutation p.Q1069H 0.21 deleterious(0.05) benign(0.03) TCGA-EE-A29D-06 17 10433391 10433391 C T MYH2 Missense_Mutation p.E900K 0.23 deleterious(0) possibly_damaging(0.493) TCGA-EE-A29D-06 17 10433392 10433392 C T MYH2 Splice_Site p.X900_splice 0.24 TCGA-EE-A29D-06 17 10450895 10450895 G A MYH2 Missense_Mutation p.P82L 0.23 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29D-06 17 10451065 10451065 C T MYH2 Missense_Mutation p.G58E 0.23 deleterious(0.04) benign(0.306) TCGA-EE-A29D-06 17 11515195 11515195 C T DNAH9 Intron 0.59 TCGA-EE-A29D-06 17 11568150 11568150 G A DNAH9 Missense_Mutation p.E866K 0.41 benign(0.033) TCGA-EE-A29D-06 17 11592934 11592934 C T DNAH9 Silent p.I1265I 0.21 TCGA-EE-A29D-06 17 11648297 11648297 C T DNAH9 Missense_Mutation p.P2099S 0.72 probably_damaging(0.984) TCGA-EE-A29D-06 17 11666907 11666907 C T DNAH9 Silent p.F2382F 0.47 TCGA-EE-A29D-06 17 11713620 11713620 C T DNAH9 Missense_Mutation p.L2881F 0.17 probably_damaging(0.993) TCGA-EE-A29D-06 17 11713671 11713671 G A DNAH9 Missense_Mutation p.D2898N 0.17 probably_damaging(1) TCGA-EE-A29D-06 17 11774974 11774974 G A DNAH9 Silent p.Q3371Q 0.67 TCGA-EE-A29D-06 17 11835355 11835355 G A DNAH9 Missense_Mutation p.E4044K 0.20 possibly_damaging(0.823) TCGA-EE-A29D-06 17 12649246 12649246 G A MYOCD Missense_Mutation p.E328K 0.36 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A29D-06 17 12666597 12666597 G A MYOCD Missense_Mutation p.G866E 0.66 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A29D-06 17 12666631 12666631 G A MYOCD Silent p.G877G 0.30 TCGA-EE-A29D-06 17 12666805 12666805 G A MYOCD Nonsense_Mutation p.W935* 0.21 TCGA-EE-A29D-06 17 12844398 12844398 G A ARHGAP44 Missense_Mutation p.S203N 0.23 tolerated(1) benign(0.02) TCGA-EE-A29D-06 17 13400058 13400058 G A HS3ST3A1 Missense_Mutation p.P226L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 1340260 1340260 T A CRK Missense_Mutation p.N144I 0.26 tolerated(0.15) benign(0.011) TCGA-EE-A29D-06 17 13503904 13503904 C G HS3ST3A1 Silent p.V181V 0.15 TCGA-EE-A29D-06 17 14248422 14248422 C T HS3ST3B1 Missense_Mutation p.P211L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 14683204 14683204 G A AC005863.1 RNA 0.40 TCGA-EE-A29D-06 17 1538393 1538393 C T SCARF1 Missense_Mutation p.G718S 0.48 tolerated(0.08) benign(0.115) TCGA-EE-A29D-06 17 15642096 15642096 G A TBC1D26 Missense_Mutation p.S150N 0.27 tolerated(1) benign(0.005) TCGA-EE-A29D-06 17 16842830 16842830 C T TNFRSF13B 3'UTR 0.43 TCGA-EE-A29D-06 17 1686346 1686346 G A SMYD4 Silent p.A748A 0.43 TCGA-EE-A29D-06 17 18023256 18023256 C T MYO15A Missense_Mutation p.A381V 0.26 benign(0.403) TCGA-EE-A29D-06 17 18023580 18023580 G A MYO15A Missense_Mutation p.G489E 0.22 probably_damaging(0.931) TCGA-EE-A29D-06 17 18635409 18635409 C T TRIM16L Missense_Mutation p.S142F 0.59 deleterious(0) possibly_damaging(0.822) TCGA-EE-A29D-06 17 18651287 18651287 C T FBXW10 Missense_Mutation p.S180F 0.73 tolerated(1) benign(0.001) TCGA-EE-A29D-06 17 19215451 19215451 G A EPN2 Silent p.K322K 0.37 TCGA-EE-A29D-06 17 19459315 19459315 C T SLC47A1 Silent p.L287L 0.20 TCGA-EE-A29D-06 17 20406445 20406445 C T RP11-434D2.7 3'Flank 0.29 TCGA-EE-A29D-06 17 2075961 2075961 G A SMG6 Silent p.T1116T 0.20 TCGA-EE-A29D-06 17 20805613 20805613 G A RP11-344E13.3 RNA 0.25 TCGA-EE-A29D-06 17 2089982 2089982 G A SMG6 Missense_Mutation p.P1044S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 21146704 21146704 G A C17orf103 Silent p.A87A 0.14 TCGA-EE-A29D-06 17 21318775 21318775 A G KCNJ12 Missense_Mutation p.R41G 0.14 deleterious(0.01) benign(0.102) TCGA-EE-A29D-06 17 21319528 21319528 G A KCNJ12 Missense_Mutation p.D292N 0.12 tolerated(0.1) benign(0.02) TCGA-EE-A29D-06 17 21826114 21826114 C T FAM27L RNA 0.29 TCGA-EE-A29D-06 17 25749151 25749151 C T TBC1D3P5 RNA 0.45 TCGA-EE-A29D-06 17 2585129 2585129 C T PAFAH1B1 3'UTR 0.33 TCGA-EE-A29D-06 17 25909935 25909935 C T KSR1 Missense_Mutation p.P125S 0.27 deleterious(0.04) benign(0.206) TCGA-EE-A29D-06 17 2598251 2598251 C T CLUH Missense_Mutation p.G879R 0.23 tolerated(0.47) possibly_damaging(0.601) TCGA-EE-A29D-06 17 26089931 26089931 G A NOS2 Missense_Mutation p.S898F 0.29 deleterious(0.01) possibly_damaging(0.836) TCGA-EE-A29D-06 17 26820755 26820755 G A SLC13A2 Missense_Mutation p.G398S 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 26821496 26821496 T G SLC13A2 Missense_Mutation p.L474R 0.53 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 17 26851655 26851655 C T FOXN1 Silent p.P86P 0.47 TCGA-EE-A29D-06 17 26919945 26919945 G A SPAG5 Missense_Mutation p.P106L 0.18 deleterious_low_confidence(0.02) benign(0.034) TCGA-EE-A29D-06 17 27068554 27068554 C T NEK8 Missense_Mutation p.S672F 0.17 deleterious(0) probably_damaging(0.941) TCGA-EE-A29D-06 17 27414026 27414026 G A MYO18A Silent p.L1880L 0.16 TCGA-EE-A29D-06 17 27613735 27613735 T A NUFIP2 Missense_Mutation p.N426I 0.34 deleterious(0.02) benign(0.299) TCGA-EE-A29D-06 17 27621107 27621107 C T NUFIP2 5'UTR 0.09 TCGA-EE-A29D-06 17 2883593 2883593 G A RAP1GAP2 Silent p.K203K 0.14 TCGA-EE-A29D-06 17 2995836 2995836 G A OR1D2 Missense_Mutation p.S152F 0.15 deleterious(0) probably_damaging(0.932) TCGA-EE-A29D-06 17 3030189 3030189 C T OR1G1 Silent p.T219T 0.19 TCGA-EE-A29D-06 17 3030272 3030272 G A OR1G1 Missense_Mutation p.P192S 0.53 deleterious(0.02) possibly_damaging(0.475) TCGA-EE-A29D-06 17 3119791 3119791 C T OR1A1 Missense_Mutation p.R293W 0.43 deleterious(0.01) benign(0.014) TCGA-EE-A29D-06 17 31260281 31260281 T A TMEM98 Missense_Mutation p.I74N 0.15 deleterious(0) possibly_damaging(0.639) TCGA-EE-A29D-06 17 3181683 3181683 C T OR3A2 Missense_Mutation p.V183I 0.12 tolerated(1) benign(0.035) TCGA-EE-A29D-06 17 3182249 3182249 C T OR3A2 5'UTR 0.34 TCGA-EE-A29D-06 17 32597386 32597386 G A CCL7 Splice_Site p.X26_splice 0.45 TCGA-EE-A29D-06 17 33259390 33259390 G A CCT6B Missense_Mutation p.P448L 0.14 deleterious(0) possibly_damaging(0.739) TCGA-EE-A29D-06 17 3343323 3343323 T C SPATA22 3'UTR 0.33 TCGA-EE-A29D-06 17 33464654 33464654 G A NLE1 Silent p.L181L 0.23 TCGA-EE-A29D-06 17 34062227 34062227 C T RASL10B Silent p.A8A 0.19 TCGA-EE-A29D-06 17 34305218 34305218 C T CCL16 Missense_Mutation p.G53E 0.35 tolerated(0.08) possibly_damaging(0.885) TCGA-EE-A29D-06 17 34313636 34313636 G A CCL14 Missense_Mutation p.A17V 0.22 tolerated(0.19) benign(0.038) TCGA-EE-A29D-06 17 34325917 34325917 G A CCL15 Missense_Mutation p.P41S 0.19 tolerated(1) benign(0.03) TCGA-EE-A29D-06 17 34493386 34493386 G A TBC1D3B Missense_Mutation p.P547S 0.35 deleterious_low_confidence(0) benign(0.17) TCGA-EE-A29D-06 17 35640208 35640208 G A ACACA Silent p.F190F 0.42 TCGA-EE-A29D-06 17 35797851 35797851 C T TADA2A Missense_Mutation p.P69S 0.12 tolerated(0.22) benign(0.17) TCGA-EE-A29D-06 17 35797852 35797852 C T TADA2A Missense_Mutation p.P69L 0.12 deleterious(0.01) possibly_damaging(0.548) TCGA-EE-A29D-06 17 35900518 35900518 G A SYNRG Silent p.I1110I 0.41 TCGA-EE-A29D-06 17 36047354 36047354 G A HNF1B 3'UTR 0.31 TCGA-EE-A29D-06 17 36064984 36064984 G A HNF1B Missense_Mutation p.P427S 0.37 tolerated(0.21) benign(0.142) TCGA-EE-A29D-06 17 36353674 36353674 C T RP11-1407O15.2 Nonsense_Mutation p.W396* 0.20 TCGA-EE-A29D-06 17 36484591 36484591 C T GPR179 Missense_Mutation p.E1621K 0.23 tolerated(0.12) benign(0.209) TCGA-EE-A29D-06 17 36689657 36689657 G A SRCIN1 Missense_Mutation p.P1143S 0.14 tolerated(0.31) benign(0.046) TCGA-EE-A29D-06 17 37234268 37234268 C T PLXDC1 Missense_Mutation p.E362K 0.34 tolerated(0.62) benign(0.169) TCGA-EE-A29D-06 17 37819233 37819233 G T STARD3 3'UTR 0.34 TCGA-EE-A29D-06 17 37922240 37922240 C T IKZF3 Missense_Mutation p.E445K 0.33 deleterious(0.01) benign(0.22) TCGA-EE-A29D-06 17 38073527 38073527 C T GSDMB Missense_Mutation p.E15K 0.13 deleterious(0.05) probably_damaging(0.99) TCGA-EE-A29D-06 17 38121961 38121961 C T GSDMA Silent p.V7V 0.38 TCGA-EE-A29D-06 17 38324145 38324145 C T CASC3 Missense_Mutation p.A565V 0.43 deleterious(0) benign(0.03) TCGA-EE-A29D-06 17 38640746 38640746 C T TNS4 Silent p.Q497Q 0.63 TCGA-EE-A29D-06 17 38856616 38856616 C T KRT24 Missense_Mutation p.G292E 0.38 tolerated(1) possibly_damaging(0.744) TCGA-EE-A29D-06 17 38859777 38859777 T C KRT24 Missense_Mutation p.S57G 0.61 tolerated(0.4) unknown(0) TCGA-EE-A29D-06 17 38906652 38906652 G A KRT25 Silent p.L385L 0.22 TCGA-EE-A29D-06 17 38955903 38955903 G A KRT28 Silent p.L81L 0.22 TCGA-EE-A29D-06 17 38975075 38975075 G A KRT10 Missense_Mutation p.S571F 0.16 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 17 39019850 39019850 G A KRT12 Missense_Mutation p.R328C 0.31 deleterious(0) probably_damaging(0.964) TCGA-EE-A29D-06 17 39114963 39114963 G A KRT39 Missense_Mutation p.R456W 0.55 deleterious(0.02) possibly_damaging(0.84) TCGA-EE-A29D-06 17 39406624 39406624 C T KRTAP9-4 3'UTR 0.27 TCGA-EE-A29D-06 17 39535885 39535885 C T KRT34 Silent p.R271R 0.15 TCGA-EE-A29D-06 17 39535886 39535886 C T KRT34 Missense_Mutation p.R271K 0.15 deleterious(0) probably_damaging(0.946) TCGA-EE-A29D-06 17 39616371 39616371 G A KRT32 Silent p.G446G 0.40 TCGA-EE-A29D-06 17 39633342 39633342 G A KRT35 Missense_Mutation p.P445L 0.11 deleterious(0.01) benign(0.012) TCGA-EE-A29D-06 17 39642748 39642748 G A KRT36 Silent p.V428V 0.33 TCGA-EE-A29D-06 17 39670153 39670153 G A KRT15 3'UTR 0.46 TCGA-EE-A29D-06 17 39672149 39672149 G A KRT15 Silent p.S338S 0.20 TCGA-EE-A29D-06 17 39768523 39768523 C T KRT16 Missense_Mutation p.E140K 0.20 tolerated(0.1) benign(0.088) TCGA-EE-A29D-06 17 39780518 39780518 C T KRT17 Missense_Mutation p.G82R 0.55 deleterious(0.03) benign(0.049) TCGA-EE-A29D-06 17 40009951 40009951 G A KLHL11 3'UTR 0.56 TCGA-EE-A29D-06 17 40336477 40336477 C T HCRT Missense_Mutation p.A31T 0.26 tolerated(0.15) benign(0.341) TCGA-EE-A29D-06 17 40336478 40336478 C T HCRT Silent p.G30G 0.26 TCGA-EE-A29D-06 17 40497602 40497602 A G STAT3 Missense_Mutation p.L116P 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 17 40689425 40689425 T A NAGLU Nonsense_Mutation p.Y131* 0.57 TCGA-EE-A29D-06 17 40716081 40716081 C T COASY Missense_Mutation p.P297L 0.41 deleterious(0) possibly_damaging(0.818) TCGA-EE-A29D-06 17 40766974 40766974 C T TUBG1 Missense_Mutation p.S424F 0.23 deleterious(0) probably_damaging(0.959) TCGA-EE-A29D-06 17 40818499 40818499 C T TUBG2 Silent p.S385S 0.47 TCGA-EE-A29D-06 17 40858135 40858135 C T EZH1 Missense_Mutation p.A577T 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A29D-06 17 40925451 40925451 G A VPS25 5'Flank 0.14 TCGA-EE-A29D-06 17 40936447 40936447 G A WNK4 Silent p.P340P 0.48 TCGA-EE-A29D-06 17 41008658 41008658 C T AOC3 3'UTR 0.46 TCGA-EE-A29D-06 17 41610061 41610061 C T ETV4 Silent p.T264T 0.17 TCGA-EE-A29D-06 17 42018982 42018982 G A PPY Missense_Mutation p.S14F 0.35 tolerated(0.15) unknown(0) TCGA-EE-A29D-06 17 42226357 42226357 C T C17orf53 Missense_Mutation p.R396C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 42249664 42249664 G A ASB16 Silent p.T184T 0.37 TCGA-EE-A29D-06 17 42287016 42287016 G A UBTF Missense_Mutation p.P571L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 42328546 42328546 C T SLC4A1 Missense_Mutation p.R879K 0.17 tolerated(0.37) benign(0.001) TCGA-EE-A29D-06 17 42429147 42429147 G A GRN Missense_Mutation p.C388Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 17 42476376 42476376 C A GPATCH8 Silent p.R1023R 0.22 TCGA-EE-A29D-06 17 42477636 42477636 G A GPATCH8 Silent p.L603L 0.21 TCGA-EE-A29D-06 17 42855416 42855416 G A ADAM11 Missense_Mutation p.E723K 0.17 tolerated(0.78) benign(0.002) TCGA-EE-A29D-06 17 43215131 43215131 C T ACBD4 Missense_Mutation p.P182L 0.17 tolerated_low_confidence(0.07) probably_damaging(0.958) TCGA-EE-A29D-06 17 43475369 43475369 C T ARHGAP27 Silent p.S255S 0.38 TCGA-EE-A29D-06 17 43924053 43924053 C T SPPL2C Missense_Mutation p.P594L 0.15 tolerated_low_confidence(0.2) benign(0.004) TCGA-EE-A29D-06 17 44249420 44249420 G A KANSL1 Silent p.S30S 0.18 TCGA-EE-A29D-06 17 44414926 44414926 G A LRRC37A Silent p.R1682R 0.20 TCGA-EE-A29D-06 17 4536769 4536769 G A ALOX15 Silent p.T396T 0.24 TCGA-EE-A29D-06 17 4544964 4544964 C T ALOX15 5'UTR 0.22 TCGA-EE-A29D-06 17 46110610 46110610 G A COPZ2 Silent p.F107F 0.28 TCGA-EE-A29D-06 17 46198943 46198943 G T SNX11 3'UTR 0.51 TCGA-EE-A29D-06 17 46262129 46262129 C T SKAP1 Missense_Mutation p.E175K 0.17 tolerated(0.09) benign(0.028) TCGA-EE-A29D-06 17 4646617 4646617 C T ZMYND15 Silent p.F388F 0.71 TCGA-EE-A29D-06 17 46627677 46627677 C T HOXB3 3'UTR 0.63 TCGA-EE-A29D-06 17 46628211 46628211 G A HOXB3 Missense_Mutation p.P261S 0.20 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 17 46657274 46657274 C T HOXB4 5'UTR 0.21 TCGA-EE-A29D-06 17 47126745 47126745 C G IGF2BP1 Missense_Mutation p.A558G 0.38 tolerated(0.18) benign(0) TCGA-EE-A29D-06 17 4713310 4713310 C T PLD2 Silent p.I282I 0.27 TCGA-EE-A29D-06 17 47375953 47375953 G A ZNF652 Missense_Mutation p.S548L 0.46 deleterious(0) probably_damaging(0.95) TCGA-EE-A29D-06 17 4804298 4804298 G A CHRNE Silent p.F263F 0.27 TCGA-EE-A29D-06 17 48262758 48262758 C T COL1A1 3'UTR 0.31 TCGA-EE-A29D-06 17 48551589 48551589 C T ACSF2 Silent p.I586I 0.53 TCGA-EE-A29D-06 17 48606545 48606545 G A MYCBPAP Missense_Mutation p.S950N 0.16 deleterious(0.01) benign(0.047) TCGA-EE-A29D-06 17 48701285 48701285 G A CACNA1G Silent p.T2026T 0.47 TCGA-EE-A29D-06 17 48745836 48745836 G A ABCC3 Missense_Mutation p.E610K 0.45 deleterious(0) possibly_damaging(0.611) TCGA-EE-A29D-06 17 48917409 48917409 G A WFIKKN2 Missense_Mutation p.V254I 0.28 tolerated(1) benign(0.009) TCGA-EE-A29D-06 17 50149706 50149706 C T CA10 Missense_Mutation p.E37K 0.17 tolerated(0.18) benign(0.242) TCGA-EE-A29D-06 17 5073877 5073877 C T USP6 Silent p.L1207L 0.68 TCGA-EE-A29D-06 17 5073878 5073878 C T USP6 Missense_Mutation p.R1208W 0.69 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29D-06 17 5084690 5084690 C T ZNF594 3'UTR 0.44 TCGA-EE-A29D-06 17 51900779 51900779 G A KIF2B Missense_Mutation p.D129N 0.17 tolerated(0.29) possibly_damaging(0.804) TCGA-EE-A29D-06 17 51900873 51900873 G A KIF2B Missense_Mutation p.R160Q 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29D-06 17 51900876 51900876 A G KIF2B Missense_Mutation p.E161G 0.36 deleterious(0) probably_damaging(0.931) TCGA-EE-A29D-06 17 51901264 51901264 C T KIF2B Silent p.S290S 0.15 TCGA-EE-A29D-06 17 51901615 51901615 G A KIF2B Silent p.G407G 0.28 TCGA-EE-A29D-06 17 51902129 51902129 G A KIF2B Missense_Mutation p.D579N 0.32 tolerated(0.09) benign(0.003) TCGA-EE-A29D-06 17 51902232 51902232 G A KIF2B Missense_Mutation p.G613E 0.33 tolerated(0.27) benign(0.013) TCGA-EE-A29D-06 17 5353685 5353685 G A DHX33 Silent p.I522I 0.21 TCGA-EE-A29D-06 17 53797994 53797994 C T TMEM100 3'UTR 0.60 TCGA-EE-A29D-06 17 54450050 54450050 C T ANKFN1 Silent p.V218V 0.54 TCGA-EE-A29D-06 17 5485271 5485271 C T NLRP1 Missense_Mutation p.G187E 0.28 tolerated(1) benign(0.001) TCGA-EE-A29D-06 17 55334379 55334379 C T MSI2 Intron 0.41 TCGA-EE-A29D-06 17 55752329 55752329 G A MSI2 Intron 0.37 TCGA-EE-A29D-06 17 56247040 56247040 G A OR4D2 Nonsense_Mutation p.W8* 0.22 TCGA-EE-A29D-06 17 56247328 56247328 C T OR4D2 Silent p.F104F 0.51 TCGA-EE-A29D-06 17 56350853 56350853 G A MPO Missense_Mutation p.R515W 0.40 deleterious(0) possibly_damaging(0.577) TCGA-EE-A29D-06 17 56385021 56385021 G A BZRAP1 Missense_Mutation p.P1645L 0.15 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A29D-06 17 56385022 56385022 G A BZRAP1 Missense_Mutation p.P1645S 0.15 deleterious(0) possibly_damaging(0.861) TCGA-EE-A29D-06 17 56676785 56676785 C T TEX14 Missense_Mutation p.G647R 0.55 tolerated(0.07) benign(0.111) TCGA-EE-A29D-06 17 56809878 56809878 G A RAD51C Silent p.K333K 0.14 TCGA-EE-A29D-06 17 57128577 57128577 C T TRIM37 Missense_Mutation p.E438K 0.36 tolerated(0.06) possibly_damaging(0.827) TCGA-EE-A29D-06 17 57287427 57287427 G A SMG8 Silent p.V5V 0.42 TCGA-EE-A29D-06 17 58031471 58031471 C T RNFT1 Missense_Mutation p.D370N 0.33 deleterious(0.01) benign(0.01) TCGA-EE-A29D-06 17 59668299 59668299 G A NACA2 Silent p.S81S 0.18 TCGA-EE-A29D-06 17 5984158 5984158 G A WSCD1 Silent p.V60V 0.89 TCGA-EE-A29D-06 17 59857626 59857626 G A BRIP1 Missense_Mutation p.S644L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 60038340 60038340 G A MED13 Missense_Mutation p.L1790F 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 17 60821749 60821749 G A MARCH10 Missense_Mutation p.P175S 0.16 tolerated(0.06) benign(0.218) TCGA-EE-A29D-06 17 61621690 61621690 C T KCNH6 Missense_Mutation p.P808S 0.48 tolerated_low_confidence(0.29) benign(0.001) TCGA-EE-A29D-06 17 61995446 61995446 G A GH1 Silent p.P74P 0.38 TCGA-EE-A29D-06 17 62006504 62006504 G A CD79B 3'UTR 0.36 TCGA-EE-A29D-06 17 62009678 62009678 G A CD79B 5'UTR 0.32 TCGA-EE-A29D-06 17 62018052 62018052 C T SCN4A 3'UTR 0.24 TCGA-EE-A29D-06 17 62029011 62029011 C T SCN4A Missense_Mutation p.E876K 0.63 tolerated(0.46) benign(0.006) TCGA-EE-A29D-06 17 62133120 62133120 G A ERN1 Silent p.S529S 0.37 TCGA-EE-A29D-06 17 62492550 62492550 C T POLG2 Silent p.G179G 0.22 TCGA-EE-A29D-06 17 62499146 62499146 A C DDX5 Missense_Mutation p.L294R 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 17 62754738 62754738 G A hsa-mir-6080 RNA 0.17 TCGA-EE-A29D-06 17 62758790 62758790 C T hsa-mir-6080 RNA 0.25 TCGA-EE-A29D-06 17 6358673 6358673 G A PITPNM3 Silent p.F970F 0.17 TCGA-EE-A29D-06 17 63633277 63633277 G A CEP112 Silent p.I943I 0.45 TCGA-EE-A29D-06 17 6428719 6428719 G A PITPNM3 Silent p.L61L 0.43 TCGA-EE-A29D-06 17 65040706 65040706 C T CACNG1 5'UTR 0.75 TCGA-EE-A29D-06 17 65955829 65955829 C T BPTF Missense_Mutation p.S2700F 0.22 benign(0.281) TCGA-EE-A29D-06 17 66533873 66533873 C T FAM20A Silent p.K457K 0.17 TCGA-EE-A29D-06 17 66538868 66538868 C T FAM20A Missense_Mutation p.E299K 0.23 tolerated(0.82) probably_damaging(0.936) TCGA-EE-A29D-06 17 67121137 67121137 G A ABCA6 Missense_Mutation p.P387S 0.31 tolerated(0.48) possibly_damaging(0.58) TCGA-EE-A29D-06 17 67129836 67129836 C T ABCA6 Missense_Mutation p.R246K 0.14 tolerated(0.39) probably_damaging(0.999) TCGA-EE-A29D-06 17 67285330 67285330 A - ABCA5 Frame_Shift_Del p.N632Tfs*7 0.21 TCGA-EE-A29D-06 17 71375682 71375682 T C SDK2 Missense_Mutation p.N1590S 0.57 tolerated(0.67) benign(0.002) TCGA-EE-A29D-06 17 71391522 71391522 C T SDK2 Missense_Mutation p.E1122K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 17 7193348 7193348 C T YBX2 Missense_Mutation p.G263R 0.29 deleterious(0) probably_damaging(0.953) TCGA-EE-A29D-06 17 7213002 7213002 C T EIF5A Silent p.A46A 0.76 TCGA-EE-A29D-06 17 7220546 7220546 C G NEURL4 Missense_Mutation p.E1488Q 0.17 tolerated(0.21) benign(0.051) TCGA-EE-A29D-06 17 7228681 7228681 C T NEURL4 Missense_Mutation p.R493Q 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A29D-06 17 72339245 72339245 C T KIF19 Silent p.A134A 0.17 TCGA-EE-A29D-06 17 7251241 7251241 G A ACAP1 Silent p.R448R 0.21 TCGA-EE-A29D-06 17 72764748 72764748 C T SLC9A3R1 Missense_Mutation p.P344S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 17 72832574 72832574 C T TMEM104 Silent p.F413F 0.44 TCGA-EE-A29D-06 17 72862340 72862340 G A FDXR Silent p.A183A 0.22 TCGA-EE-A29D-06 17 72915871 72915871 C T USH1G Missense_Mutation p.D354N 0.41 tolerated(0.38) benign(0.001) TCGA-EE-A29D-06 17 72916232 72916232 G A USH1G Silent p.V233V 0.14 TCGA-EE-A29D-06 17 72926630 72926630 C T OTOP2 Silent p.F300F 0.31 TCGA-EE-A29D-06 17 72943188 72943188 G A OTOP3 Missense_Mutation p.S413N 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A29D-06 17 72943431 72943431 C T OTOP3 Missense_Mutation p.P494L 0.44 deleterious(0.02) benign(0.011) TCGA-EE-A29D-06 17 72945424 72945424 C T OTOP3 Silent p.F568F 0.52 TCGA-EE-A29D-06 17 7329911 7329911 C T C17orf74 Missense_Mutation p.R201C 0.12 deleterious(0.01) benign(0.057) TCGA-EE-A29D-06 17 7346000 7346000 C T FGF11 Missense_Mutation p.R166C 0.18 deleterious(0) possibly_damaging(0.825) TCGA-EE-A29D-06 17 73489821 73489821 G A KIAA0195 Missense_Mutation p.G744E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 17 73493869 73493869 C T KIAA0195 Silent p.L1139L 0.52 TCGA-EE-A29D-06 17 73497860 73497860 C T CASKIN2 Missense_Mutation p.G1099R 0.17 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A29D-06 17 73921466 73921466 G A FBF1 Silent p.V296V 0.22 TCGA-EE-A29D-06 17 73923614 73923614 C T FBF1 Splice_Site p.X119_splice 0.36 TCGA-EE-A29D-06 17 7402425 7402425 C T POLR2A Missense_Mutation p.S468F 0.29 probably_damaging(0.997) TCGA-EE-A29D-06 17 74079752 74079752 G A EXOC7 Missense_Mutation p.R729C 0.24 deleterious(0) probably_damaging(0.913) TCGA-EE-A29D-06 17 7411738 7411738 C T POLR2A Missense_Mutation p.P1137S 0.21 probably_damaging(1) TCGA-EE-A29D-06 17 74289888 74289888 G A QRICH2 Missense_Mutation p.P141L 0.54 deleterious(0.01) benign(0.004) TCGA-EE-A29D-06 17 74326142 74326142 G A PRPSAP1 Missense_Mutation p.S206F 0.32 tolerated(0.08) benign(0.046) TCGA-EE-A29D-06 17 74388010 74388010 A T UBE2O Missense_Mutation p.L1044Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 17 74554899 74554899 C T SNHG16 RNA 0.49 TCGA-EE-A29D-06 17 7464269 7464269 T C TNFSF12-TNFSF13 3'UTR 0.30 TCGA-EE-A29D-06 17 7464350 7464350 C T TNFSF12-TNFSF13 3'UTR 0.30 TCGA-EE-A29D-06 17 7486989 7486989 T C MPDU1 5'UTR 0.58 TCGA-EE-A29D-06 17 74944723 74944723 C T MGAT5B Silent p.L737L 0.27 TCGA-EE-A29D-06 17 75210084 75210084 C T SEC14L1 Silent p.S709S 0.37 TCGA-EE-A29D-06 17 75398213 75398213 C T SEPT9 Missense_Mutation p.P50L 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 17 76094577 76094577 G A TNRC6C Nonsense_Mutation p.W1523* 0.15 TCGA-EE-A29D-06 17 76134513 76134513 C T TMC8 Silent p.L539L 0.44 TCGA-EE-A29D-06 17 76456268 76456268 C T DNAH17 Silent p.Q3123Q 0.32 TCGA-EE-A29D-06 17 76482354 76482354 G A DNAH17 Silent p.F2337F 0.22 TCGA-EE-A29D-06 17 76491047 76491047 C T DNAH17 Silent p.S1998S 0.45 TCGA-EE-A29D-06 17 76497741 76497741 G A DNAH17-AS1 3'UTR 0.22 TCGA-EE-A29D-06 17 76528619 76528619 C T DNAH17 Nonsense_Mutation p.W1020* 0.29 TCGA-EE-A29D-06 17 7755556 7755556 G A KDM6B Missense_Mutation p.R1457Q 0.58 probably_damaging(0.915) TCGA-EE-A29D-06 17 77705082 77705082 G A ENPP7 Missense_Mutation p.G61R 0.22 deleterious(0.04) possibly_damaging(0.665) TCGA-EE-A29D-06 17 7798689 7798689 C T CHD3 Silent p.I571I 0.19 TCGA-EE-A29D-06 17 78082402 78082402 C T GAA Missense_Mutation p.P397L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 17 78169111 78169111 G A CARD14 Missense_Mutation p.G493E 0.18 tolerated(0.32) benign(0.021) TCGA-EE-A29D-06 17 78219950 78219950 C T SLC26A11 Intron 0.21 TCGA-EE-A29D-06 17 78445558 78445558 C T NPTX1 Missense_Mutation p.G351S 0.29 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 17 7907264 7907264 C T GUCY2D Silent p.S272S 0.28 TCGA-EE-A29D-06 17 79093188 79093188 G A AATK Missense_Mutation p.S1359F 0.15 deleterious(0) possibly_damaging(0.757) TCGA-EE-A29D-06 17 79181018 79181018 G A AZI1 Silent p.F98F 0.18 TCGA-EE-A29D-06 17 79225352 79225352 G A SLC38A10 Missense_Mutation p.P669L 0.59 tolerated(0.31) benign(0.008) TCGA-EE-A29D-06 17 79226133 79226133 G A SLC38A10 Silent p.L603L 0.49 TCGA-EE-A29D-06 17 79411764 79411764 C T RP11-1055B8.7 Silent p.P861P 0.42 TCGA-EE-A29D-06 17 7948224 7948224 C T ALOX15B Missense_Mutation p.R252C 0.43 tolerated(0.06) benign(0.077) TCGA-EE-A29D-06 17 7984079 7984079 C T ALOX12B Missense_Mutation p.G183R 0.21 deleterious(0) probably_damaging(0.938) TCGA-EE-A29D-06 17 80210425 80210429 GTTGA - CSNK1D Frame_Shift_Del p.F206Sfs*22 0.56 TCGA-EE-A29D-06 17 80521235 80521235 C T FOXK2 Missense_Mutation p.T142I 0.17 tolerated(0.09) possibly_damaging(0.589) TCGA-EE-A29D-06 17 8741159 8741159 G A PIK3R6 Silent p.I73I 0.19 TCGA-EE-A29D-06 18 10471727 10471727 A T APCDD1 Missense_Mutation p.H148L 0.86 deleterious(0.02) benign(0.234) TCGA-EE-A29D-06 18 10471728 10471728 C T APCDD1 Silent p.H148H 0.86 TCGA-EE-A29D-06 18 13681863 13681863 C T FAM210A Missense_Mutation p.D72N 0.87 tolerated(0.46) benign(0.001) TCGA-EE-A29D-06 18 14478185 14478185 C T CXADRP3 RNA 0.34 TCGA-EE-A29D-06 18 14478439 14478439 C T CXADRP3 RNA 0.47 TCGA-EE-A29D-06 18 14542915 14542915 C T POTEC Silent p.T77T 0.06 TCGA-EE-A29D-06 18 14851621 14851621 G A ANKRD30B Silent p.V1107V 0.31 TCGA-EE-A29D-06 18 21119817 21119817 G A NPC1 Missense_Mutation p.S918F 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 18 21484001 21484001 G A LAMA3 Silent p.E2141E 0.21 TCGA-EE-A29D-06 18 28605833 28605833 C T DSC3 Missense_Mutation p.G175R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 18 28654727 28654727 G A DSC2 Missense_Mutation p.H604Y 0.18 tolerated(0.34) benign(0.189) TCGA-EE-A29D-06 18 28711464 28711464 C T DSC1 Intron 0.58 TCGA-EE-A29D-06 18 28712647 28712647 G A DSC1 Silent p.L708L 0.79 TCGA-EE-A29D-06 18 28736029 28736029 G A DSC1 Missense_Mutation p.P150S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 18 28923499 28923499 G A DSG1 Missense_Mutation p.G592R 0.61 deleterious(0) probably_damaging(0.981) TCGA-EE-A29D-06 18 28934527 28934527 G A DSG1 Missense_Mutation p.E790K 0.26 tolerated(0.19) benign(0.293) TCGA-EE-A29D-06 18 28934896 28934896 C T DSG1 Missense_Mutation p.H913Y 0.58 deleterious(0) benign(0.124) TCGA-EE-A29D-06 18 28983586 28983586 G A DSG4 Missense_Mutation p.R542K 0.28 tolerated(0.33) benign(0.023) TCGA-EE-A29D-06 18 29055971 29055971 C T DSG3 Silent p.V916V 0.37 TCGA-EE-A29D-06 18 29178657 29178657 G A TTR 3'UTR 0.39 TCGA-EE-A29D-06 18 29784308 29784308 G A MEP1B Missense_Mutation p.D178N 0.44 tolerated(0.08) benign(0.17) TCGA-EE-A29D-06 18 31320165 31320165 C T ASXL3 Missense_Mutation p.R933W 0.50 probably_damaging(0.991) TCGA-EE-A29D-06 18 31324048 31324048 C G ASXL3 Silent p.T1412T 0.23 TCGA-EE-A29D-06 18 31432951 31432951 G A NOL4 Missense_Mutation p.S591F 0.28 deleterious(0) possibly_damaging(0.5) TCGA-EE-A29D-06 18 32462053 32462053 C T DTNA Missense_Mutation p.P641L 0.74 tolerated_low_confidence(0.09) benign(0.167) TCGA-EE-A29D-06 18 32834140 32834140 C T ZSCAN30 Silent p.Q253Q 0.32 TCGA-EE-A29D-06 18 33243875 33243875 A G GALNT1 Intron 0.29 TCGA-EE-A29D-06 18 33779649 33779649 C T MOCOS Silent p.I101I 0.31 TCGA-EE-A29D-06 18 3581967 3581967 G A DLGAP1 Missense_Mutation p.T624I 0.52 tolerated(0.08) benign(0.057) TCGA-EE-A29D-06 18 40695516 40695516 G A RIT2 5'UTR 0.77 TCGA-EE-A29D-06 18 42531530 42531530 C T SETBP1 Missense_Mutation p.P742L 0.88 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 18 43311028 43311028 C T SLC14A1 Missense_Mutation p.S123F 0.95 deleterious(0) probably_damaging(0.914) TCGA-EE-A29D-06 18 43529513 43529513 G A EPG5 Silent p.F478F 0.36 TCGA-EE-A29D-06 18 44013247 44013247 C T RNF165 Silent p.F52F 1.00 TCGA-EE-A29D-06 18 44036630 44036630 C T RNF165 3'UTR 0.40 TCGA-EE-A29D-06 18 44470728 44470728 G A PIAS2 Missense_Mutation p.P105L 0.50 deleterious(0.03) possibly_damaging(0.908) TCGA-EE-A29D-06 18 44470763 44470763 T C PIAS2 Silent p.E93E 0.40 TCGA-EE-A29D-06 18 44549192 44549192 C T TCEB3CL Silent p.G369G 0.06 TCGA-EE-A29D-06 18 45566546 45566546 C T ZBTB7C Silent p.K311K 0.31 TCGA-EE-A29D-06 18 50278540 50278540 C T DCC Missense_Mutation p.P70S 0.48 deleterious(0) benign(0.039) TCGA-EE-A29D-06 18 50705364 50705364 C T DCC Missense_Mutation p.S484F 0.41 deleterious(0.02) benign(0.125) TCGA-EE-A29D-06 18 50912423 50912423 C T DCC Silent p.S790S 0.44 TCGA-EE-A29D-06 18 52896133 52896133 G A TCF4 Silent p.L710L 0.30 TCGA-EE-A29D-06 18 54814861 54814861 G A BOD1L2 Silent p.V106V 0.50 TCGA-EE-A29D-06 18 55104010 55104010 G A ONECUT2 Silent p.A354A 0.39 TCGA-EE-A29D-06 18 56182252 56182252 G A ALPK2 Missense_Mutation p.P2001L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 18 56202459 56202459 C T ALPK2 Missense_Mutation p.A1654T 0.46 tolerated(0.09) benign(0.221) TCGA-EE-A29D-06 18 56204103 56204103 G A ALPK2 Silent p.L1106L 0.40 TCGA-EE-A29D-06 18 56247505 56247505 G A ALPK2 Missense_Mutation p.S168F 0.40 tolerated(0.88) benign(0) TCGA-EE-A29D-06 18 56651670 56651670 C T ZNF532 Missense_Mutation p.S1293F 0.59 deleterious(0) probably_damaging(0.961) TCGA-EE-A29D-06 18 56819826 56819826 G A SEC11C Missense_Mutation p.E86K 0.37 tolerated(0.75) benign(0.005) TCGA-EE-A29D-06 18 59814235 59814235 G A PIGN Silent p.I258I 0.42 TCGA-EE-A29D-06 18 59912077 59912077 C T KIAA1468 Silent p.F567F 0.19 TCGA-EE-A29D-06 18 61378629 61378629 G A SERPINB11 Splice_Site p.X76_splice 0.42 TCGA-EE-A29D-06 18 61562542 61562542 G A SERPINB2 Missense_Mutation p.M71I 0.49 tolerated(0.23) benign(0) TCGA-EE-A29D-06 18 61569062 61569062 G A SERPINB2 Nonsense_Mutation p.W208* 0.48 TCGA-EE-A29D-06 18 64211317 64211317 G A CDH19 Missense_Mutation p.L369F 0.44 deleterious(0) benign(0.003) TCGA-EE-A29D-06 18 65180720 65180720 G A DSEL Missense_Mutation p.P386S 0.39 tolerated(0.27) benign(0.22) TCGA-EE-A29D-06 18 65181846 65181846 G A DSEL Silent p.I10I 0.30 TCGA-EE-A29D-06 18 6942055 6942055 C T LAMA1 3'UTR 0.87 TCGA-EE-A29D-06 18 70461373 70461373 G A NETO1 Silent p.I206I 0.53 TCGA-EE-A29D-06 18 72347196 72347196 C T ZNF407 Silent p.S1407S 0.31 TCGA-EE-A29D-06 18 72999231 72999231 C T TSHZ1 Silent p.S578S 0.25 TCGA-EE-A29D-06 18 76755193 76755193 C T SALL3 Missense_Mutation p.H1068Y 0.67 deleterious(0.01) possibly_damaging(0.716) TCGA-EE-A29D-06 18 77089262 77089262 C T ATP9B Missense_Mutation p.P632L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 18 77227570 77227570 C T NFATC1 Missense_Mutation p.L681F 0.56 tolerated(0.1) probably_damaging(0.98) TCGA-EE-A29D-06 19 1011891 1011891 G A TMEM259 Silent p.F314F 0.21 TCGA-EE-A29D-06 19 10224798 10224798 T - PPAN-P2RY11 Frame_Shift_Del p.L590Rfs*69 0.15 TCGA-EE-A29D-06 19 10334520 10334520 T C S1PR2 Nonstop_Mutation p.*354Wext*? 0.39 TCGA-EE-A29D-06 19 10416141 10416141 G A ZGLP1 Missense_Mutation p.S208F 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 19 10473091 10473091 G A TYK2 Silent p.P506P 0.50 TCGA-EE-A29D-06 19 10663560 10663560 G A ATG4D Splice_Site p.X415_splice 0.41 TCGA-EE-A29D-06 19 10738439 10738439 C T SLC44A2 Missense_Mutation p.A43V 0.30 tolerated(0.44) benign(0.084) TCGA-EE-A29D-06 19 10747352 10747352 C T SLC44A2 Missense_Mutation p.S504F 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 19 10753728 10753728 C T SLC44A2 Intron 0.50 TCGA-EE-A29D-06 19 1080683 1080683 G A HMHA1 Missense_Mutation p.D655N 0.42 deleterious(0) possibly_damaging(0.726) TCGA-EE-A29D-06 19 11213363 11213363 G A LDLR Missense_Mutation p.D72N 0.21 deleterious(0) possibly_damaging(0.716) TCGA-EE-A29D-06 19 11224057 11224057 C T LDLR Silent p.V430V 0.47 TCGA-EE-A29D-06 19 11508206 11508206 G A RGL3 Missense_Mutation p.P611L 0.48 deleterious(0.01) unknown(0) TCGA-EE-A29D-06 19 11598658 11598658 G A ZNF653 Missense_Mutation p.S207F 0.22 deleterious(0.03) benign(0.346) TCGA-EE-A29D-06 19 12460848 12460848 T C ZNF442 Silent p.E517E 0.52 TCGA-EE-A29D-06 19 12501536 12501536 G A ZNF799 Missense_Mutation p.P559L 0.24 deleterious(0.03) benign(0.413) TCGA-EE-A29D-06 19 1251902 1251902 T C MIDN Splice_Site p.X128_splice 0.61 TCGA-EE-A29D-06 19 12575060 12575060 G A ZNF709 Missense_Mutation p.P559L 0.39 deleterious(0.05) benign(0.036) TCGA-EE-A29D-06 19 12996295 12996295 C T KLF1 Missense_Mutation p.G250E 0.50 deleterious(0.03) benign(0.202) TCGA-EE-A29D-06 19 13080480 13080480 C T DAND5 Silent p.L2L 0.36 TCGA-EE-A29D-06 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.44 TCGA-EE-A29D-06 19 14159999 14159999 C T IL27RA Silent p.L425L 0.32 TCGA-EE-A29D-06 19 14273562 14273562 C T LPHN1 Missense_Mutation p.E356K 0.49 tolerated(0.52) possibly_damaging(0.846) TCGA-EE-A29D-06 19 14512302 14512302 T C CD97 Silent p.L334L 0.44 TCGA-EE-A29D-06 19 14512303 14512303 G T CD97 Nonsense_Mutation p.E335* 0.44 TCGA-EE-A29D-06 19 14752422 14752422 C T EMR3 Missense_Mutation p.D353N 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 19 14755050 14755050 C T EMR3 Nonsense_Mutation p.W307* 0.53 TCGA-EE-A29D-06 19 15073080 15073080 G A SLC1A6 Silent p.S223S 0.34 TCGA-EE-A29D-06 19 15166846 15166846 G A CASP14 Silent p.R225R 0.37 TCGA-EE-A29D-06 19 15308372 15308372 C T NOTCH3 Missense_Mutation p.G46R 0.20 deleterious(0.05) possibly_damaging(0.866) TCGA-EE-A29D-06 19 15990627 15990627 G A CYP4F2 Missense_Mutation p.S399F 0.50 deleterious(0.05) benign(0.114) TCGA-EE-A29D-06 19 16035587 16035587 C T CYP4F11 Missense_Mutation p.E211K 0.25 tolerated(0.06) benign(0.005) TCGA-EE-A29D-06 19 1615541 1615541 G A TCF3 Intron 0.52 TCGA-EE-A29D-06 19 16275693 16275693 C T CIB3 Nonsense_Mutation p.W126* 0.20 TCGA-EE-A29D-06 19 16536010 16536010 G A EPS15L1 Silent p.L226L 0.25 TCGA-EE-A29D-06 19 16860024 16860024 G A NWD1 Missense_Mutation p.E191K 0.48 deleterious(0) possibly_damaging(0.511) TCGA-EE-A29D-06 19 16861050 16861050 C T NWD1 Missense_Mutation p.P533S 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29D-06 19 17100582 17100582 C T CPAMD8 Splice_Site p.X470_splice 0.24 TCGA-EE-A29D-06 19 17476724 17476724 C T PLVAP Missense_Mutation p.E184K 0.33 deleterious(0.02) possibly_damaging(0.744) TCGA-EE-A29D-06 19 17611306 17611306 G A SLC27A1 Missense_Mutation p.E446K 0.47 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29D-06 19 17722638 17722638 C T UNC13A Missense_Mutation p.E1529K 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 19 17752324 17752324 G A UNC13A Silent p.V838V 0.44 TCGA-EE-A29D-06 19 17780453 17780453 G A UNC13A Silent p.S101S 0.27 TCGA-EE-A29D-06 19 18273088 18273088 G A PIK3R2 Silent p.Q326Q 0.55 TCGA-EE-A29D-06 19 18279579 18279579 G A PIK3R2 Missense_Mutation p.E618K 0.15 deleterious(0.01) benign(0.057) TCGA-EE-A29D-06 19 18308374 18308374 G A RAB3A Missense_Mutation p.S190L 0.39 deleterious(0.01) benign(0.263) TCGA-EE-A29D-06 19 18377373 18377373 G A KIAA1683 Missense_Mutation p.P326L 0.41 tolerated(0.07) benign(0.141) TCGA-EE-A29D-06 19 18507256 18507256 C T LRRC25 Missense_Mutation p.G173E 0.42 deleterious(0) benign(0.041) TCGA-EE-A29D-06 19 18679452 18679452 C T KXD1 3'UTR 0.40 TCGA-EE-A29D-06 19 18870861 18870861 C T CRTC1 Missense_Mutation p.P253S 0.44 deleterious(0.03) possibly_damaging(0.77) TCGA-EE-A29D-06 19 19257959 19257959 C T MEF2B Missense_Mutation p.V143I 0.25 tolerated(0.23) benign(0.107) TCGA-EE-A29D-06 19 19308364 19308364 C T RFXANK Silent p.G124G 0.37 TCGA-EE-A29D-06 19 19681040 19681040 G A PBX4 Silent p.S170S 0.29 TCGA-EE-A29D-06 19 20216075 20216075 G A ZNF90 Missense_Mutation p.G59E 0.24 tolerated(0.29) benign(0.105) TCGA-EE-A29D-06 19 20807093 20807093 G A ZNF626 3'UTR 0.15 TCGA-EE-A29D-06 19 2127179 2127179 G A AP3D1 Silent p.L276L 0.26 TCGA-EE-A29D-06 19 21606755 21606755 C T ZNF493 Missense_Mutation p.P432S 0.59 deleterious(0.03) benign(0.191) TCGA-EE-A29D-06 19 21712583 21712583 C T ZNF429 Silent p.L43L 0.25 TCGA-EE-A29D-06 19 21713414 21713414 C T ZNF429 Silent p.L52L 0.33 TCGA-EE-A29D-06 19 22155011 22155011 T A ZNF208 Missense_Mutation p.E942V 0.40 deleterious(0.03) unknown(0) TCGA-EE-A29D-06 19 22170022 22170022 G A ZNF208 Silent p.S74S 0.23 TCGA-EE-A29D-06 19 22193671 22193671 C T ZNF208 5'UTR 0.29 TCGA-EE-A29D-06 19 22255733 22255733 C T ZNF257 Silent p.F42F 0.25 TCGA-EE-A29D-06 19 22363619 22363619 C T ZNF676 Silent p.K300K 0.28 TCGA-EE-A29D-06 19 22364041 22364041 C T ZNF676 Missense_Mutation p.E160K 0.61 tolerated(1) benign(0) TCGA-EE-A29D-06 19 22379532 22379532 G A ZNF676 5'UTR 0.47 TCGA-EE-A29D-06 19 2255333 2255333 C T JSRP1 5'UTR 0.54 TCGA-EE-A29D-06 19 22574525 22574525 G A ZNF98 Silent p.H504H 0.50 TCGA-EE-A29D-06 19 22574744 22574744 C T ZNF98 Silent p.E431E 0.45 TCGA-EE-A29D-06 19 22847042 22847042 C T ZNF492 Missense_Mutation p.H191Y 0.29 tolerated(0.08) possibly_damaging(0.82) TCGA-EE-A29D-06 19 2290687 2290687 G A LINGO3 Silent p.I363I 0.19 TCGA-EE-A29D-06 19 2291343 2291343 T G LINGO3 Missense_Mutation p.T145P 0.66 tolerated(0.16) possibly_damaging(0.653) TCGA-EE-A29D-06 19 22939282 22939282 C T ZNF99 3'Flank 0.33 TCGA-EE-A29D-06 19 22939861 22939861 G A ZNF99 3'Flank 0.17 TCGA-EE-A29D-06 19 22941681 22941681 C T ZNF99 Missense_Mutation p.E344K 0.28 tolerated(0.76) possibly_damaging(0.486) TCGA-EE-A29D-06 19 2328389 2328389 C A LSM7 Nonsense_Mutation p.E32* 0.30 TCGA-EE-A29D-06 19 23845935 23845935 G A ZNF675 Missense_Mutation p.A10V 0.14 tolerated(0.1) probably_damaging(0.918) TCGA-EE-A29D-06 19 23927174 23927174 G T ZNF681 Missense_Mutation p.P393H 0.41 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A29D-06 19 24010564 24010564 C T RPSAP58 Silent p.L201L 0.38 TCGA-EE-A29D-06 19 2811693 2811693 C T THOP1 Silent p.F623F 0.38 TCGA-EE-A29D-06 19 2834605 2834605 C T ZNF554 Missense_Mutation p.H458Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 19 2878184 2878184 C T ZNF556 Missense_Mutation p.L410F 0.24 tolerated(0.71) benign(0.005) TCGA-EE-A29D-06 19 2993568 2993568 T C TLE6 Missense_Mutation p.F509L 0.53 deleterious(0.01) benign(0.037) TCGA-EE-A29D-06 19 30505980 30505980 C T URI1 3'UTR 0.26 TCGA-EE-A29D-06 19 30934969 30934969 C T ZNF536 Missense_Mutation p.A167V 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 19 31039120 31039120 C T ZNF536 Missense_Mutation p.S865F 0.54 deleterious(0.01) possibly_damaging(0.583) TCGA-EE-A29D-06 19 31039377 31039377 G A ZNF536 Missense_Mutation p.G951R 0.28 tolerated(0.36) benign(0.013) TCGA-EE-A29D-06 19 31039900 31039900 G A ZNF536 Missense_Mutation p.G1125E 0.59 deleterious_low_confidence(0.01) benign(0.33) TCGA-EE-A29D-06 19 31039926 31039926 G A ZNF536 Missense_Mutation p.E1134K 0.24 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A29D-06 19 31769133 31769133 G A TSHZ3 Silent p.I522I 0.28 TCGA-EE-A29D-06 19 31770617 31770617 C T TSHZ3 Missense_Mutation p.E28K 0.30 deleterious(0.02) benign(0.086) TCGA-EE-A29D-06 19 33623028 33623028 C T WDR88 5'UTR 0.67 TCGA-EE-A29D-06 19 33638555 33638555 A G WDR88 Missense_Mutation p.I161V 0.33 tolerated(1) benign(0.007) TCGA-EE-A29D-06 19 35832794 35832794 C T CD22 Missense_Mutation p.S654L 0.45 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29D-06 19 35850311 35850311 C T FFAR3 Silent p.F173F 0.24 TCGA-EE-A29D-06 19 3600469 3600469 C T TBXA2R Missense_Mutation p.G55E 0.39 tolerated(0.64) possibly_damaging(0.548) TCGA-EE-A29D-06 19 36205574 36205574 C T ZBTB32 Missense_Mutation p.R16W 0.42 deleterious(0) possibly_damaging(0.745) TCGA-EE-A29D-06 19 36222831 36222831 C T KMT2B Silent p.P1820P 0.39 TCGA-EE-A29D-06 19 36222832 36222832 C T KMT2B Missense_Mutation p.P1821S 0.39 benign(0) TCGA-EE-A29D-06 19 36223190 36223190 C T KMT2B Missense_Mutation p.R1914C 0.30 probably_damaging(0.973) TCGA-EE-A29D-06 19 36236317 36236317 G A PSENEN 5'UTR 0.35 TCGA-EE-A29D-06 19 36243971 36243971 C T LIN37 Intron 0.41 TCGA-EE-A29D-06 19 36271327 36271327 G A ARHGAP33 Missense_Mutation p.G210E 0.26 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29D-06 19 36333307 36333307 C T NPHS1 Missense_Mutation p.R827Q 0.40 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A29D-06 19 36333363 36333363 C T NPHS1 Silent p.L808L 0.15 TCGA-EE-A29D-06 19 3633482 3633482 G A PIP5K1C Missense_Mutation p.H653Y 0.49 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A29D-06 19 36362577 36362577 C T APLP1 Missense_Mutation p.R201W 0.18 deleterious(0) possibly_damaging(0.847) TCGA-EE-A29D-06 19 36370325 36370325 C T APLP1 Silent p.F646F 0.39 TCGA-EE-A29D-06 19 36494527 36494527 T C SYNE4 Missense_Mutation p.E340G 0.26 deleterious(0.03) possibly_damaging(0.727) TCGA-EE-A29D-06 19 36558769 36558769 C T WDR62 Silent p.L247L 0.16 TCGA-EE-A29D-06 19 37101563 37101563 G A ZNF382 Missense_Mutation p.A51T 0.16 tolerated(1) benign(0) TCGA-EE-A29D-06 19 37118348 37118348 G A ZNF382 Missense_Mutation p.E517K 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 19 3739045 3739045 G A TJP3 Missense_Mutation p.S524N 0.34 tolerated_low_confidence(0.37) benign(0.014) TCGA-EE-A29D-06 19 37618501 37618501 C T ZNF420 Missense_Mutation p.A203V 0.38 tolerated(0.07) possibly_damaging(0.787) TCGA-EE-A29D-06 19 37677325 37677325 G A ZNF585B Missense_Mutation p.H372Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 38189210 38189210 C T ZNF607 Missense_Mutation p.E608K 0.49 tolerated(0.13) benign(0.065) TCGA-EE-A29D-06 19 38229711 38229711 C T ZNF573 Silent p.G560G 0.18 TCGA-EE-A29D-06 19 38572456 38572456 C T SIPA1L3 Missense_Mutation p.A84V 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 38572698 38572698 C T SIPA1L3 Missense_Mutation p.P165S 0.46 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A29D-06 19 38779813 38779813 G A SPINT2 Missense_Mutation p.D125N 0.20 tolerated(0.24) benign(0.024) TCGA-EE-A29D-06 19 39299478 39299478 C T LGALS4 Missense_Mutation p.G82E 0.28 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 19 39303084 39303084 C T LGALS4 Missense_Mutation p.E41K 0.15 tolerated(0.37) benign(0.011) TCGA-EE-A29D-06 19 39421451 39421451 C T SARS2 5'Flank 0.33 TCGA-EE-A29D-06 19 39694680 39694680 T C SYCN Missense_Mutation p.N72S 0.21 tolerated(0.38) benign(0.01) TCGA-EE-A29D-06 19 3976551 3976551 C T EEF2 3'UTR 0.31 TCGA-EE-A29D-06 19 3979426 3979426 G A EEF2 Silent p.I538I 0.45 TCGA-EE-A29D-06 19 39804945 39804945 G A LRFN1 Silent p.S344S 0.47 TCGA-EE-A29D-06 19 39976380 39976380 C T TIMM50 Missense_Mutation p.P245L 0.22 deleterious(0) possibly_damaging(0.723) TCGA-EE-A29D-06 19 40200038 40200038 C T LGALS14 3'Flank 0.36 TCGA-EE-A29D-06 19 40320539 40320539 C T DYRK1B Silent p.T167T 0.24 TCGA-EE-A29D-06 19 40368368 40368368 G A FCGBP Missense_Mutation p.S4327F 0.16 probably_damaging(0.953) TCGA-EE-A29D-06 19 40395828 40395828 C T FCGBP Silent p.L2523L 0.40 TCGA-EE-A29D-06 19 40397974 40397974 G A FCGBP Silent p.D2331D 0.19 TCGA-EE-A29D-06 19 40420140 40420140 G A FCGBP Missense_Mutation p.P952S 0.56 probably_damaging(1) TCGA-EE-A29D-06 19 40741920 40741920 T - AKT2 Frame_Shift_Del p.Y351Sfs*224 0.17 TCGA-EE-A29D-06 19 40877667 40877667 C T PLD3 Nonsense_Mutation p.Q256* 0.40 TCGA-EE-A29D-06 19 40901605 40901605 G A PRX Missense_Mutation p.P885L 0.24 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A29D-06 19 41062138 41062138 G A SPTBN4 Missense_Mutation p.E1745K 0.52 deleterious(0) probably_damaging(0.928) TCGA-EE-A29D-06 19 41111009 41111009 G T LTBP4 Missense_Mutation p.D174Y 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29D-06 19 41243613 41243613 T A ITPKC Missense_Mutation p.V596E 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29D-06 19 41430260 41430260 G A CYP2B7P RNA 0.25 TCGA-EE-A29D-06 19 41522597 41522597 C T CYP2B6 Silent p.F447F 0.29 TCGA-EE-A29D-06 19 41597763 41597763 C T CYP2A13 Missense_Mutation p.P261S 0.36 deleterious(0.04) possibly_damaging(0.453) TCGA-EE-A29D-06 19 41704620 41704620 G A CYP2S1 Missense_Mutation p.E221K 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29D-06 19 41727125 41727125 C T AXL Missense_Mutation p.S128F 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 19 41754451 41754451 G A AXL Missense_Mutation p.E524K 0.14 tolerated(0.09) possibly_damaging(0.77) TCGA-EE-A29D-06 19 42190984 42190984 C T CEACAM7 Missense_Mutation p.R78Q 0.22 tolerated(0.73) benign(0.092) TCGA-EE-A29D-06 19 42219036 42219036 C T CEACAM5 Silent p.L191L 0.39 TCGA-EE-A29D-06 19 42223919 42223919 C T CEACAM5 Silent p.F521F 0.23 TCGA-EE-A29D-06 19 42259529 42259529 G A CEACAM6 5'UTR 0.18 TCGA-EE-A29D-06 19 42315336 42315336 G A CEACAM3 3'UTR 0.30 TCGA-EE-A29D-06 19 42492157 42492157 G A ATP1A3 Silent p.I109I 0.25 TCGA-EE-A29D-06 19 42558547 42558547 G A GRIK5 Silent p.I327I 0.38 TCGA-EE-A29D-06 19 42585084 42585084 C T ZNF574 Missense_Mutation p.R776C 0.20 deleterious(0) probably_damaging(0.965) TCGA-EE-A29D-06 19 42621504 42621504 G A POU2F2 Silent p.D67D 0.44 TCGA-EE-A29D-06 19 42713875 42713875 G A DEDD2 Missense_Mutation p.S189F 0.35 tolerated(0.15) benign(0.048) TCGA-EE-A29D-06 19 42795507 42795507 C T CIC Missense_Mutation p.R863C 0.68 probably_damaging(0.973) TCGA-EE-A29D-06 19 42813869 42813869 C T PRR19 Missense_Mutation p.P45S 0.30 tolerated(0.07) possibly_damaging(0.536) TCGA-EE-A29D-06 19 42840346 42840346 C T MEGF8 Silent p.F364F 0.22 TCGA-EE-A29D-06 19 42875633 42875633 A G MEGF8 Missense_Mutation p.Q2356R 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 4292752 4292752 G A TMIGD2 Silent p.P231P 0.51 TCGA-EE-A29D-06 19 42930511 42930511 C T LIPE Missense_Mutation p.G264E 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A29D-06 19 4307975 4307975 C T FSD1 Missense_Mutation p.P114S 0.26 tolerated(0.89) benign(0) TCGA-EE-A29D-06 19 43243098 43243098 C T PSG3 Missense_Mutation p.G70R 0.21 deleterious(0.01) possibly_damaging(0.843) TCGA-EE-A29D-06 19 43262257 43262257 G A PSG8 Silent p.L202L 0.19 TCGA-EE-A29D-06 19 43348714 43348714 C T PSG10P RNA 0.45 TCGA-EE-A29D-06 19 43371255 43371255 G A PSG1 3'Flank 0.48 TCGA-EE-A29D-06 19 43406496 43406496 T A PSG6 3'Flank 0.18 TCGA-EE-A29D-06 19 43411173 43411173 G A PSG6 Missense_Mutation p.P381S 0.19 tolerated(0.54) benign(0.261) TCGA-EE-A29D-06 19 43411772 43411772 C T PSG6 Missense_Mutation p.R314Q 0.22 tolerated(0.19) benign(0.015) TCGA-EE-A29D-06 19 43414950 43414950 G A PSG6 Missense_Mutation p.A163V 0.21 tolerated(0.21) benign(0.008) TCGA-EE-A29D-06 19 43420371 43420371 G A PSG6 Silent p.V111V 0.45 TCGA-EE-A29D-06 19 43519497 43519497 G A PSG11 Silent p.F245F 0.15 TCGA-EE-A29D-06 19 43522979 43522979 C T PSG11 Missense_Mutation p.E218K 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 19 43679421 43679421 G A PSG5 Missense_Mutation p.R304C 0.19 deleterious(0.04) probably_damaging(0.982) TCGA-EE-A29D-06 19 43699294 43699294 G A PSG4 Missense_Mutation p.P281S 0.18 tolerated(0.08) possibly_damaging(0.876) TCGA-EE-A29D-06 19 43762347 43762347 C T PSG9 Intron 0.19 TCGA-EE-A29D-06 19 43763273 43763273 G A PSG9 Missense_Mutation p.P242S 0.22 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A29D-06 19 43920619 43920619 C T TEX101 Silent p.I119I 0.42 TCGA-EE-A29D-06 19 43979548 43979548 G A PHLDB3 3'UTR 0.50 TCGA-EE-A29D-06 19 44223413 44223413 G A IRGC Missense_Mutation p.D235N 0.43 deleterious(0) probably_damaging(0.976) TCGA-EE-A29D-06 19 44570477 44570477 C T ZNF223 Missense_Mutation p.P166S 0.20 tolerated(0.22) benign(0.004) TCGA-EE-A29D-06 19 44611664 44611664 A T ZNF224 Missense_Mutation p.T451S 0.42 tolerated(0.08) benign(0.172) TCGA-EE-A29D-06 19 44679561 44679561 C T ZNF226 Intron 0.38 TCGA-EE-A29D-06 19 44793189 44793189 G A ZNF235 Silent p.F133F 0.36 TCGA-EE-A29D-06 19 44891395 44891395 G A ZNF285 Missense_Mutation p.H338Y 0.11 tolerated(0.07) benign(0.009) TCGA-EE-A29D-06 19 44891418 44891418 G A ZNF285 Missense_Mutation p.S330F 0.23 tolerated(0.69) benign(0.024) TCGA-EE-A29D-06 19 44891924 44891924 G A ZNF285 Silent p.N161N 0.25 TCGA-EE-A29D-06 19 44932551 44932551 C T ZNF229 Missense_Mutation p.G802E 0.24 deleterious(0.03) probably_damaging(1) TCGA-EE-A29D-06 19 45015214 45015214 C T CEACAM20 Splice_Site 0.26 TCGA-EE-A29D-06 19 4513418 4513418 C T PLIN4 Missense_Mutation p.G171E 0.10 deleterious(0.05) possibly_damaging(0.801) TCGA-EE-A29D-06 19 45213849 45213849 G A CEACAM16 3'UTR 0.49 TCGA-EE-A29D-06 19 45213850 45213850 G A CEACAM16 3'UTR 0.49 TCGA-EE-A29D-06 19 45260400 45260400 C T BCL3 Missense_Mutation p.R216C 0.35 tolerated(0.05) possibly_damaging(0.765) TCGA-EE-A29D-06 19 45281486 45281486 C T CBLC Missense_Mutation p.P100S 0.27 tolerated(0.09) benign(0.029) TCGA-EE-A29D-06 19 45281499 45281499 G A CBLC Missense_Mutation p.R104K 0.42 tolerated(1) benign(0.001) TCGA-EE-A29D-06 19 45284184 45284184 A C CBLC Missense_Mutation p.I126L 0.50 tolerated(1) benign(0.003) TCGA-EE-A29D-06 19 45297458 45297458 C T CBLC Intron 0.35 TCGA-EE-A29D-06 19 45297532 45297532 G A CBLC Silent p.P452P 0.54 TCGA-EE-A29D-06 19 45312378 45312378 G A BCAM 5'UTR 0.31 TCGA-EE-A29D-06 19 45315495 45315495 G A BCAM Missense_Mutation p.D94N 0.39 tolerated(0.17) benign(0.009) TCGA-EE-A29D-06 19 45316778 45316778 G A BCAM Missense_Mutation p.D229N 0.19 tolerated(0.13) benign(0.066) TCGA-EE-A29D-06 19 45422464 45422464 G A APOC1 Missense_Mutation p.E77K 0.42 tolerated(0.05) possibly_damaging(0.874) TCGA-EE-A29D-06 19 45445539 45445539 C T APOC4 Missense_Mutation p.S2F 0.45 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A29D-06 19 45476449 45476449 C G CLPTM1 Missense_Mutation p.F97L 0.41 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A29D-06 19 4548095 4548095 G A SEMA6B Silent p.P515P 0.41 TCGA-EE-A29D-06 19 45855556 45855556 G A ERCC2 Missense_Mutation p.L701F 0.41 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29D-06 19 45868162 45868162 G A ERCC2 Silent p.N176N 0.43 TCGA-EE-A29D-06 19 45997425 45997425 T A RTN2 Silent p.L271L 0.44 TCGA-EE-A29D-06 19 46393919 46393919 G A MYPOP Missense_Mutation p.P388S 0.13 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-EE-A29D-06 19 46498700 46498700 C T CCDC61 5'Flank 0.59 TCGA-EE-A29D-06 19 46823779 46823779 C T HIF3A Missense_Mutation p.P369S 0.39 tolerated(0.39) benign(0.008) TCGA-EE-A29D-06 19 46823780 46823780 C T HIF3A Missense_Mutation p.P369L 0.40 tolerated(0.22) benign(0.008) TCGA-EE-A29D-06 19 46832687 46832687 C T HIF3A Missense_Mutation p.S555F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-EE-A29D-06 19 46842856 46842856 G A HIF3A Missense_Mutation p.A663T 0.29 tolerated_low_confidence(0.15) benign(0.005) TCGA-EE-A29D-06 19 46997306 46997306 C T PNMAL2 Missense_Mutation p.E473K 0.18 tolerated_low_confidence(0.1) benign(0.094) TCGA-EE-A29D-06 19 47181631 47181631 G A PRKD2 Intron 0.44 TCGA-EE-A29D-06 19 47280488 47280488 G A SLC1A5 Silent p.F411F 0.19 TCGA-EE-A29D-06 19 47503917 47503917 C T ARHGAP35 Missense_Mutation p.S1491F 0.40 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A29D-06 19 47548453 47548453 G A NPAS1 Silent p.P439P 0.35 TCGA-EE-A29D-06 19 47823975 47823975 C T C5AR1 Missense_Mutation p.S314F 0.23 deleterious(0) probably_damaging(0.955) TCGA-EE-A29D-06 19 47935701 47935701 C T SLC8A2 Silent p.G704G 0.40 TCGA-EE-A29D-06 19 48198219 48198219 C T GLTSCR1 Silent p.S986S 0.71 TCGA-EE-A29D-06 19 48533812 48533812 C T CABP5 3'UTR 0.27 TCGA-EE-A29D-06 19 49055573 49055573 G A SULT2B1 Missense_Mutation p.E22K 0.14 tolerated_low_confidence(0.13) benign(0.059) TCGA-EE-A29D-06 19 49230093 49230093 C T RASIP1 Silent p.L692L 0.19 TCGA-EE-A29D-06 19 49230406 49230406 C T RASIP1 Silent p.E627E 0.51 TCGA-EE-A29D-06 19 49540006 49540006 G A CGB1 5'UTR 0.17 TCGA-EE-A29D-06 19 49558806 49558806 C T CGB7 5'UTR 0.15 TCGA-EE-A29D-06 19 49573279 49573279 C T KCNA7 3'UTR 0.25 TCGA-EE-A29D-06 19 49655269 49655269 C T HRC Missense_Mutation p.C673Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 49658204 49658204 C T HRC Silent p.K97K 0.45 TCGA-EE-A29D-06 19 49714469 49714469 C T TRPM4 Missense_Mutation p.R1195C 0.27 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29D-06 19 49846637 49846637 G A TEAD2 Missense_Mutation p.P314S 0.17 tolerated(0.81) benign(0.007) TCGA-EE-A29D-06 19 49863116 49863116 C T TEAD2 Missense_Mutation p.E73K 0.44 deleterious(0) probably_damaging(0.984) TCGA-EE-A29D-06 19 50156268 50156268 C T SCAF1 Silent p.S874S 0.60 TCGA-EE-A29D-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.43 TCGA-EE-A29D-06 19 50309455 50309455 C T AP2A1 Missense_Mutation p.T934I 0.55 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29D-06 19 50339161 50339161 G A MED25 Missense_Mutation p.A642T 0.13 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-EE-A29D-06 19 50789892 50789892 C T MYH14 Missense_Mutation p.R1565W 0.23 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 19 50838088 50838088 C T NAPSB Intron 0.38 TCGA-EE-A29D-06 19 50839876 50839876 C T NAPSB RNA 0.31 TCGA-EE-A29D-06 19 50961914 50961914 C T MYBPC2 Silent p.T803T 0.19 TCGA-EE-A29D-06 19 51165626 51165626 G A SHANK1 Missense_Mutation p.L2028F 0.44 unknown(0) TCGA-EE-A29D-06 19 51165627 51165627 G A SHANK1 Silent p.P2027P 0.41 TCGA-EE-A29D-06 19 5131469 5131469 C T KDM4B Silent p.S566S 0.27 TCGA-EE-A29D-06 19 51329192 51329192 C T KLK15 Missense_Mutation p.G211R 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29D-06 19 51363376 51363376 A G KLK3 Missense_Mutation p.N260S 0.25 deleterious(0) possibly_damaging(0.75) TCGA-EE-A29D-06 19 51503756 51503756 G A KLK8 Nonsense_Mutation p.Q97* 0.37 TCGA-EE-A29D-06 19 51628483 51628483 G A SIGLEC9 Nonsense_Mutation p.W84* 0.21 TCGA-EE-A29D-06 19 51630492 51630492 C T SIGLEC9 Silent p.F318F 0.19 TCGA-EE-A29D-06 19 51650055 51650055 G A SIGLEC7 Missense_Mutation p.G358R 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 19 51768643 51768643 C T SIGLECL1 Missense_Mutation p.S15F 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A29D-06 19 51770765 51770765 T G SIGLECL1 Missense_Mutation p.F183L 0.45 tolerated(0.29) benign(0.011) TCGA-EE-A29D-06 19 51919272 51919272 C T SIGLEC10 Missense_Mutation p.G302S 0.16 tolerated(0.06) possibly_damaging(0.734) TCGA-EE-A29D-06 19 51955670 51955670 C T SIGLEC8 Missense_Mutation p.R488K 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A29D-06 19 51955726 51955726 T C SIGLEC8 Silent p.E469E 0.41 TCGA-EE-A29D-06 19 51958677 51958677 C T SIGLEC8 Missense_Mutation p.G349D 0.17 tolerated(0.22) benign(0.004) TCGA-EE-A29D-06 19 51986440 51986440 G A CEACAM18 Missense_Mutation p.M342I 0.21 tolerated(1) benign(0.006) TCGA-EE-A29D-06 19 52003212 52003212 C T SIGLEC12 Nonsense_Mutation p.W257* 0.16 TCGA-EE-A29D-06 19 52003319 52003319 G A SIGLEC12 Silent p.L221L 0.42 TCGA-EE-A29D-06 19 52003509 52003509 G A SIGLEC12 Missense_Mutation p.S158L 0.21 tolerated(0.26) benign(0.058) TCGA-EE-A29D-06 19 52034461 52034461 C T SIGLEC6 Nonsense_Mutation p.W127* 0.39 TCGA-EE-A29D-06 19 52090935 52090935 G A ZNF175 Missense_Mutation p.E451K 0.20 tolerated(0.24) benign(0.013) TCGA-EE-A29D-06 19 52091390 52091390 C T ZNF175 Silent p.F602F 0.21 TCGA-EE-A29D-06 19 52130500 52130500 C T SIGLEC5 Silent p.G428G 0.17 TCGA-EE-A29D-06 19 52147228 52147228 G A SIGLEC14 Silent p.L272L 0.46 TCGA-EE-A29D-06 19 52249356 52249356 G A FPR1 Missense_Mutation p.P298S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 19 52249802 52249802 G A FPR1 Missense_Mutation p.P149L 0.46 tolerated(0.43) benign(0.029) TCGA-EE-A29D-06 19 5245826 5245826 G A PTPRS Silent p.L317L 0.44 TCGA-EE-A29D-06 19 52569877 52569877 G A ZNF841 Missense_Mutation p.H420Y 0.42 tolerated(0.12) benign(0.108) TCGA-EE-A29D-06 19 52569978 52569978 G A ZNF841 Missense_Mutation p.S386F 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 52869729 52869729 T A ZNF610 Missense_Mutation p.H366Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 52941580 52941580 G A ZNF534 Silent p.R302R 0.21 TCGA-EE-A29D-06 19 52955079 52955079 G A ZNF578 5'Flank 0.34 TCGA-EE-A29D-06 19 53014261 53014261 G A ZNF578 Silent p.G209G 0.22 TCGA-EE-A29D-06 19 53015110 53015110 C T ZNF578 Silent p.F492F 0.17 TCGA-EE-A29D-06 19 53117713 53117713 C T ZNF83 Silent p.G35G 0.13 TCGA-EE-A29D-06 19 53208331 53208331 G A ZNF611 Silent p.F659F 0.22 TCGA-EE-A29D-06 19 53303290 53303290 C T ZNF28 Missense_Mutation p.G603E 0.22 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 19 53377316 53377316 G A ZNF320 3'Flank 0.15 TCGA-EE-A29D-06 19 53453642 53453642 G A ZNF816 Silent p.F462F 0.30 TCGA-EE-A29D-06 19 53453973 53453973 C T ZNF816 Missense_Mutation p.R352Q 0.25 tolerated(1) benign(0.017) TCGA-EE-A29D-06 19 53473406 53473406 G A ZNF702P RNA 0.17 TCGA-EE-A29D-06 19 53473650 53473650 G A ZNF702P RNA 0.26 TCGA-EE-A29D-06 19 53572700 53572700 G A ZNF160 Missense_Mutation p.H363Y 0.18 deleterious(0.01) probably_damaging(0.917) TCGA-EE-A29D-06 19 53958276 53958276 C T ZNF761 RNA 0.21 TCGA-EE-A29D-06 19 53994390 53994390 G A ZNF813 Missense_Mutation p.E302K 0.21 tolerated(0.09) benign(0.034) TCGA-EE-A29D-06 19 53994440 53994440 G A ZNF813 Silent p.R318R 0.25 TCGA-EE-A29D-06 19 53995860 53995860 C T ZNF813 3'UTR 0.36 TCGA-EE-A29D-06 19 54080403 54080403 C T ZNF331 Nonsense_Mutation p.R197* 0.26 TCGA-EE-A29D-06 19 54191757 54191757 G A MIR1283-1 RNA 0.45 TCGA-EE-A29D-06 19 54198494 54198494 C T MIR519B RNA 0.44 TCGA-EE-A29D-06 19 54230225 54230225 C T MIR526A2 RNA 0.25 TCGA-EE-A29D-06 19 54291170 54291170 C T MIR372 RNA 0.19 TCGA-EE-A29D-06 19 54314140 54314140 C T NLRP12 Missense_Mutation p.S258N 0.34 tolerated(0.51) benign(0.015) TCGA-EE-A29D-06 19 54401230 54401230 C T PRKCG Silent p.P319P 0.21 TCGA-EE-A29D-06 19 54600214 54600214 C T OSCAR Missense_Mutation p.R107Q 0.51 tolerated(0.35) benign(0.066) TCGA-EE-A29D-06 19 54656727 54656727 C T CNOT3 Silent p.Y676Y 0.20 TCGA-EE-A29D-06 19 54721255 54721255 G A LILRB3 Missense_Mutation p.S562L 0.20 tolerated(0.06) benign(0.023) TCGA-EE-A29D-06 19 54782698 54782698 G A LILRB2 Silent p.A308A 0.31 TCGA-EE-A29D-06 19 54783910 54783910 G A LILRB2 Silent p.L31L 0.18 TCGA-EE-A29D-06 19 54848860 54848860 G A LILRA4 Silent p.L255L 0.41 TCGA-EE-A29D-06 19 54850416 54850416 C T LILRA4 5'UTR 0.49 TCGA-EE-A29D-06 19 54871680 54871680 C T LAIR1 Splice_Site p.X122_splice 0.13 TCGA-EE-A29D-06 19 55086354 55086354 C T LILRA2 Missense_Mutation p.S170F 0.46 tolerated(0.69) benign(0.018) TCGA-EE-A29D-06 19 55086388 55086388 C T LILRA2 Silent p.S181S 0.22 TCGA-EE-A29D-06 19 55098686 55098686 C T LILRA2 Missense_Mutation p.P442L 0.51 tolerated(0.16) benign(0.051) TCGA-EE-A29D-06 19 55144763 55144763 G A LILRB1 Missense_Mutation p.V419I 0.30 deleterious(0.01) possibly_damaging(0.554) TCGA-EE-A29D-06 19 55144765 55144765 C T LILRB1 Silent p.V419V 0.26 TCGA-EE-A29D-06 19 55146590 55146590 G A LILRB1 Missense_Mutation p.A508T 0.15 tolerated(0.19) benign(0.281) TCGA-EE-A29D-06 19 55148357 55148357 C T LILRB1 3'UTR 0.14 TCGA-EE-A29D-06 19 55175231 55175231 C T LILRB4 Silent p.T30T 0.48 TCGA-EE-A29D-06 19 55177876 55177876 G A LILRB4 Missense_Mutation p.G326E 0.19 tolerated(1) benign(0.001) TCGA-EE-A29D-06 19 55258819 55258819 G A KIR2DL3 Missense_Mutation p.E233K 0.26 tolerated(0.18) probably_damaging(0.991) TCGA-EE-A29D-06 19 55263828 55263828 G A KIR2DL3 Missense_Mutation p.E295K 0.50 tolerated(0.45) benign(0.214) TCGA-EE-A29D-06 19 55286802 55286802 C T KIR2DL1 Missense_Mutation p.P186S 0.40 tolerated(0.13) probably_damaging(0.984) TCGA-EE-A29D-06 19 55316320 55316320 G A KIR2DL4 Missense_Mutation p.R50Q 0.37 tolerated(1) benign(0.01) TCGA-EE-A29D-06 19 55317424 55317424 C T KIR2DL4 Missense_Mutation p.S127L 0.23 deleterious(0.01) possibly_damaging(0.466) TCGA-EE-A29D-06 19 55350885 55350885 C T KIR2DS4 Silent p.L125L 0.38 TCGA-EE-A29D-06 19 55420731 55420731 C T NCR1 Silent p.S161S 0.54 TCGA-EE-A29D-06 19 55450285 55450285 C T NLRP7 Missense_Mutation p.M634I 0.49 tolerated(0.16) benign(0) TCGA-EE-A29D-06 19 55494591 55494591 T C NLRP2 Missense_Mutation p.F509L 0.44 tolerated(0.39) benign(0.061) TCGA-EE-A29D-06 19 55591907 55591907 G A EPS8L1 Intron 0.16 TCGA-EE-A29D-06 19 55663157 55663157 A T TNNI3 3'UTR 0.36 TCGA-EE-A29D-06 19 55678019 55678019 G A DNAAF3 5'Flank 0.29 TCGA-EE-A29D-06 19 55693471 55693471 G A PTPRH Silent p.L1037L 0.32 TCGA-EE-A29D-06 19 56153915 56153915 C T ZNF580 Missense_Mutation p.S14F 0.26 tolerated(0.15) unknown(0) TCGA-EE-A29D-06 19 56220256 56220256 G A NLRP9 3'UTR 0.42 TCGA-EE-A29D-06 19 56226516 56226516 G A NLRP9 Silent p.S802S 0.22 TCGA-EE-A29D-06 19 56243460 56243460 T C NLRP9 Silent p.V579V 0.34 TCGA-EE-A29D-06 19 56249680 56249680 C T NLRP9 Missense_Mutation p.E21K 0.47 deleterious(0.05) probably_damaging(0.931) TCGA-EE-A29D-06 19 56320313 56320313 C T NLRP11 Missense_Mutation p.E555K 0.41 deleterious(0.02) possibly_damaging(0.669) TCGA-EE-A29D-06 19 56321341 56321341 G A NLRP11 Missense_Mutation p.A212V 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29D-06 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.22 tolerated(0.1) benign(0) TCGA-EE-A29D-06 19 56363573 56363573 C A NLRP4 Missense_Mutation p.P43T 0.45 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29D-06 19 56370067 56370067 G A NLRP4 Silent p.K436K 0.23 TCGA-EE-A29D-06 19 56370234 56370234 G A NLRP4 Missense_Mutation p.R492K 0.36 tolerated(1) benign(0.001) TCGA-EE-A29D-06 19 56392997 56392997 G A NLRP4 3'UTR 0.16 TCGA-EE-A29D-06 19 56416366 56416366 C T NLRP13 Missense_Mutation p.G854S 0.15 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A29D-06 19 56466462 56466462 G A NLRP8 Silent p.L346L 0.32 TCGA-EE-A29D-06 19 56466654 56466654 G A NLRP8 Missense_Mutation p.M410I 0.49 deleterious(0.03) benign(0.023) TCGA-EE-A29D-06 19 56467093 56467093 C T NLRP8 Missense_Mutation p.L557F 0.13 tolerated(0.06) possibly_damaging(0.503) TCGA-EE-A29D-06 19 56477621 56477621 C T NLRP8 Silent p.I752I 0.39 TCGA-EE-A29D-06 19 56487560 56487560 A T NLRP8 Missense_Mutation p.N923Y 0.51 deleterious(0) probably_damaging(0.972) TCGA-EE-A29D-06 19 56538842 56538842 G A NLRP5 Missense_Mutation p.E415K 0.25 tolerated(0.17) benign(0.21) TCGA-EE-A29D-06 19 56895962 56895962 C T ZNF582 Missense_Mutation p.R275Q 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A29D-06 19 56925785 56925785 G A ZNF583 Missense_Mutation p.E70K 0.38 tolerated(0.09) benign(0.001) TCGA-EE-A29D-06 19 56934704 56934704 C T ZNF583 Missense_Mutation p.S226F 0.14 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A29D-06 19 56972063 56972063 G A ZNF667 Missense_Mutation p.S52L 0.22 deleterious(0.03) benign(0.267) TCGA-EE-A29D-06 19 57133717 57133717 C T ZNF71 Silent p.F354F 0.54 TCGA-EE-A29D-06 19 57286085 57286085 C T ZIM2 Missense_Mutation p.E519K 0.29 deleterious(0) benign(0.322) TCGA-EE-A29D-06 19 57325217 57325217 G A PEG3 Silent p.I1531I 0.19 TCGA-EE-A29D-06 19 57326619 57326619 T G PEG3 Missense_Mutation p.Q1064P 0.24 tolerated(0.21) benign(0.124) TCGA-EE-A29D-06 19 57327691 57327691 G A PEG3 Missense_Mutation p.H707Y 0.47 tolerated(0.3) possibly_damaging(0.863) TCGA-EE-A29D-06 19 57335874 57335874 C T PEG3 Silent p.R50R 0.18 TCGA-EE-A29D-06 19 57640749 57640749 C T USP29 Missense_Mutation p.P236S 0.49 tolerated(0.06) benign(0.021) TCGA-EE-A29D-06 19 57666725 57666725 G A DUXA Nonsense_Mutation p.R152* 0.14 TCGA-EE-A29D-06 19 57666741 57666741 C T DUXA Splice_Site p.X147_splice 0.20 TCGA-EE-A29D-06 19 57984885 57984885 G A ZNF772 Silent p.I409I 0.18 TCGA-EE-A29D-06 19 58102135 58102135 G A ZIK1 Missense_Mutation p.G319E 0.28 deleterious(0.03) possibly_damaging(0.873) TCGA-EE-A29D-06 19 58153167 58153167 C T ZNF211 Missense_Mutation p.S503F 0.44 deleterious(0.04) probably_damaging(0.949) TCGA-EE-A29D-06 19 58189734 58189734 G A ZSCAN4 Missense_Mutation p.E255K 0.53 deleterious(0.02) benign(0.068) TCGA-EE-A29D-06 19 58290889 58290889 C T ZNF586 Missense_Mutation p.H312Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 58453234 58453234 C T ZNF256 Silent p.Q314Q 0.18 TCGA-EE-A29D-06 19 58472862 58472862 C T C19orf18 Silent p.R143R 0.19 TCGA-EE-A29D-06 19 58489886 58489886 G A ZNF606 Missense_Mutation p.S721L 0.36 deleterious(0) benign(0.01) TCGA-EE-A29D-06 19 58489985 58489985 G A ZNF606 Missense_Mutation p.S688F 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 19 58491212 58491212 G A ZNF606 Missense_Mutation p.P279L 0.20 tolerated(0.77) possibly_damaging(0.593) TCGA-EE-A29D-06 19 58565154 58565154 C T ZSCAN1 Missense_Mutation p.P321L 0.46 tolerated(0.3) benign(0.019) TCGA-EE-A29D-06 19 58579881 58579881 C T ZNF135 3'UTR 0.23 TCGA-EE-A29D-06 19 58601541 58601541 C T ZSCAN18 Missense_Mutation p.E88K 0.24 tolerated(0.34) benign(0.1) TCGA-EE-A29D-06 19 58718331 58718331 C T ZNF274 Silent p.F167F 0.50 TCGA-EE-A29D-06 19 58864213 58864213 C T A1BG Intron 0.53 TCGA-EE-A29D-06 19 58868095 58868095 G T ZNF497 Missense_Mutation p.P303T 0.45 tolerated(0.12) benign(0.003) TCGA-EE-A29D-06 19 58868096 58868096 G A ZNF497 Silent p.F302F 0.33 TCGA-EE-A29D-06 19 58929094 58929094 C T ZNF584 Silent p.V403V 0.42 TCGA-EE-A29D-06 19 58966911 58966911 G A ZNF324B Silent p.Q200Q 0.48 TCGA-EE-A29D-06 19 59012770 59012770 G T SLC27A5 Silent p.T355T 0.44 TCGA-EE-A29D-06 19 6007026 6007026 G A RFX2 Missense_Mutation p.P467S 0.34 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 19 6040131 6040131 G A RFX2 Missense_Mutation p.P128S 0.42 tolerated(0.55) benign(0.091) TCGA-EE-A29D-06 19 6040132 6040132 G A RFX2 Silent p.V127V 0.49 TCGA-EE-A29D-06 19 6312166 6312166 C T ACER1 Missense_Mutation p.G115E 0.28 tolerated(0.79) benign(0.003) TCGA-EE-A29D-06 19 6535057 6535057 C T TNFSF9 Missense_Mutation p.P249S 0.29 tolerated(0.1) possibly_damaging(0.79) TCGA-EE-A29D-06 19 6665331 6665331 C T TNFSF14 Missense_Mutation p.G110E 0.31 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 19 6665332 6665332 C T TNFSF14 Missense_Mutation p.G110R 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 19 6679431 6679431 G A C3 Silent p.C1511C 0.54 TCGA-EE-A29D-06 19 6694503 6694503 C T C3 Silent p.T1031T 0.19 TCGA-EE-A29D-06 19 681536 681536 G A FSTL3 Missense_Mutation p.V237M 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 19 6828179 6828179 C T VAV1 Silent p.L340L 0.30 TCGA-EE-A29D-06 19 6833594 6833594 G A VAV1 Missense_Mutation p.E556K 0.46 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29D-06 19 6937593 6937593 G A EMR1 Silent p.T863T 0.36 TCGA-EE-A29D-06 19 7120680 7120680 C T INSR Missense_Mutation p.A1204T 0.27 deleterious(0) possibly_damaging(0.708) TCGA-EE-A29D-06 19 7126627 7126627 G A INSR Missense_Mutation p.S994F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 19 7143015 7143015 G A INSR Missense_Mutation p.S785L 0.41 tolerated(0.14) benign(0.003) TCGA-EE-A29D-06 19 7707209 7707209 G A STXBP2 Missense_Mutation p.D262N 0.38 deleterious(0.04) probably_damaging(1) TCGA-EE-A29D-06 19 7964850 7964850 C T LRRC8E Silent p.F481F 0.32 TCGA-EE-A29D-06 19 8005991 8005991 G C TIMM44 Missense_Mutation p.P46R 0.33 tolerated(0.1) benign(0.013) TCGA-EE-A29D-06 19 8152827 8152827 G A FBN3 Silent p.I2167I 0.60 TCGA-EE-A29D-06 19 8175759 8175759 C T FBN3 Missense_Mutation p.E1435K 0.58 tolerated(0.15) probably_damaging(0.921) TCGA-EE-A29D-06 19 8527463 8527463 A G HNRNPM Missense_Mutation p.R112G 0.57 deleterious(0) possibly_damaging(0.627) TCGA-EE-A29D-06 19 8590433 8590433 C T MYO1F Silent p.K928K 0.41 TCGA-EE-A29D-06 19 8604855 8604855 G A MYO1F Silent p.P556P 0.44 TCGA-EE-A29D-06 19 8661077 8661077 C T ADAMTS10 Missense_Mutation p.G406E 0.51 deleterious(0) probably_damaging(0.975) TCGA-EE-A29D-06 19 8808551 8808551 G A ACTL9 Silent p.F167F 0.58 TCGA-EE-A29D-06 19 8841990 8841990 C T OR2Z1 Silent p.S200S 0.21 TCGA-EE-A29D-06 19 9046005 9046005 C T MUC16 Missense_Mutation p.G11876S 0.19 benign(0) TCGA-EE-A29D-06 19 9047030 9047030 G A MUC16 Missense_Mutation p.S11534L 0.32 benign(0.316) TCGA-EE-A29D-06 19 9050067 9050067 C T MUC16 Missense_Mutation p.E10522K 0.29 benign(0.007) TCGA-EE-A29D-06 19 9056254 9056254 C T MUC16 Missense_Mutation p.D10398N 0.27 benign(0.007) TCGA-EE-A29D-06 19 9058180 9058180 G A MUC16 Missense_Mutation p.P9756S 0.37 unknown(0) TCGA-EE-A29D-06 19 9059369 9059369 C T MUC16 Silent p.R9359R 0.27 TCGA-EE-A29D-06 19 9060190 9060190 G A MUC16 Missense_Mutation p.P9086S 0.34 unknown(0) TCGA-EE-A29D-06 19 9062066 9062066 G A MUC16 Silent p.S8460S 0.26 TCGA-EE-A29D-06 19 9062157 9062157 G A MUC16 Missense_Mutation p.A8430V 0.43 unknown(0) TCGA-EE-A29D-06 19 9062726 9062726 C T MUC16 Silent p.E8240E 0.40 TCGA-EE-A29D-06 19 9062910 9062910 G A MUC16 Missense_Mutation p.S8179F 0.24 unknown(0) TCGA-EE-A29D-06 19 9063117 9063117 C T MUC16 Missense_Mutation p.R8110K 0.33 unknown(0) TCGA-EE-A29D-06 19 9064409 9064409 G A MUC16 Silent p.P7679P 0.40 TCGA-EE-A29D-06 19 9065944 9065944 C T MUC16 Missense_Mutation p.D7168N 0.46 unknown(0) TCGA-EE-A29D-06 19 9065945 9065945 C T MUC16 Silent p.K7167K 0.44 TCGA-EE-A29D-06 19 9067148 9067148 C T MUC16 Silent p.S6766S 0.29 TCGA-EE-A29D-06 19 9067300 9067300 C T MUC16 Missense_Mutation p.E6716K 0.52 unknown(0) TCGA-EE-A29D-06 19 9071745 9071745 G A MUC16 Missense_Mutation p.S5234F 0.46 unknown(0) TCGA-EE-A29D-06 19 9072286 9072286 G A MUC16 Silent p.L5054L 0.35 TCGA-EE-A29D-06 19 9076700 9076700 G A MUC16 Silent p.T3582T 0.45 TCGA-EE-A29D-06 19 9085622 9085622 G A MUC16 Missense_Mutation p.P2065S 0.42 unknown(0) TCGA-EE-A29D-06 19 9087347 9087347 G A MUC16 Missense_Mutation p.P1490S 0.36 unknown(0) TCGA-EE-A29D-06 19 9212986 9212986 G A OR7G2 Silent p.L333L 0.40 TCGA-EE-A29D-06 19 9324970 9324970 C T OR7D4 Missense_Mutation p.A182T 0.29 tolerated(0.4) benign(0.137) TCGA-EE-A29D-06 19 9325033 9325033 G A OR7D4 Silent p.L161L 0.59 TCGA-EE-A29D-06 19 9325100 9325100 G A OR7D4 Silent p.P138P 0.27 TCGA-EE-A29D-06 19 9406452 9406452 G A ZNF699 Missense_Mutation p.P543L 0.31 tolerated(0.65) benign(0.022) TCGA-EE-A29D-06 19 9490783 9490783 C T ZNF177 Missense_Mutation p.P102S 0.53 tolerated(0.58) benign(0.067) TCGA-EE-A29D-06 19 9577848 9577848 C T ZNF560 Missense_Mutation p.R592Q 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-EE-A29D-06 19 9964821 9964821 C T OLFM2 3'UTR 0.60 TCGA-EE-A29D-06 1 101198190 101198190 G A VCAM1 Missense_Mutation p.G581E 0.43 deleterious(0) probably_damaging(0.973) TCGA-EE-A29D-06 1 103412505 103412505 G A COL11A1 Missense_Mutation p.P1059L 0.60 unknown(0) TCGA-EE-A29D-06 1 103491497 103491497 G A COL11A1 Intron 0.87 TCGA-EE-A29D-06 1 103573682 103573682 G A COL11A1 Missense_Mutation p.T18I 0.87 benign(0.159) TCGA-EE-A29D-06 1 10386378 10386378 C T KIF1B Missense_Mutation p.P916L 0.89 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 1 104112500 104112500 C T AMY2B Intron 0.60 TCGA-EE-A29D-06 1 104160223 104160223 G A AMY2A Missense_Mutation p.G54E 0.83 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 1 104160224 104160224 G A AMY2A Silent p.G54G 0.83 TCGA-EE-A29D-06 1 10459274 10459274 C T PGD Intron 1.00 TCGA-EE-A29D-06 1 109394869 109394869 C T AKNAD1 Missense_Mutation p.D140N 0.38 deleterious(0.05) benign(0.085) TCGA-EE-A29D-06 1 109795155 109795155 C A CELSR2 Missense_Mutation p.D818E 0.39 tolerated(0.27) benign(0.026) TCGA-EE-A29D-06 1 109806962 109806962 C A CELSR2 Missense_Mutation p.A1755D 0.46 tolerated(0.66) benign(0.006) TCGA-EE-A29D-06 1 11007805 11007805 G A C1orf127 Missense_Mutation p.P796L 0.95 tolerated(0.06) benign(0.199) TCGA-EE-A29D-06 1 111060963 111060963 C T KCNA10 Silent p.G149G 0.48 TCGA-EE-A29D-06 1 112042916 112042916 G A ADORA3 Intron 0.93 TCGA-EE-A29D-06 1 112045922 112045922 C T ADORA3 Missense_Mutation p.E19K 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29D-06 1 114402005 114402005 G A PTPN22 Silent p.I55I 0.85 TCGA-EE-A29D-06 1 115428861 115428861 C T SYCP1 Missense_Mutation p.S374L 0.35 deleterious(0.01) benign(0.069) TCGA-EE-A29D-06 1 117158795 117158795 G A IGSF3 Missense_Mutation p.L110F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 1 117311262 117311262 C T CD2 Nonsense_Mutation p.Q305* 0.40 TCGA-EE-A29D-06 1 117559820 117559820 G A CD101 Missense_Mutation p.S446N 0.63 tolerated(0.39) benign(0.068) TCGA-EE-A29D-06 1 117564216 117564216 C T CD101 Missense_Mutation p.S680L 0.25 tolerated(0.1) benign(0.013) TCGA-EE-A29D-06 1 118424453 118424453 G A GDAP2 Missense_Mutation p.R432C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 1 118583359 118583359 C T SPAG17 Missense_Mutation p.E1054K 0.70 tolerated(0.67) benign(0.015) TCGA-EE-A29D-06 1 119474246 119474246 C T TBX15 Missense_Mutation p.G33S 0.53 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 1 120301896 120301896 C T HMGCS2 Missense_Mutation p.G232E 0.61 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A29D-06 1 120306940 120306940 G A HMGCS2 Silent p.S138S 0.19 TCGA-EE-A29D-06 1 1203309 1203309 G A UBE2J2 Missense_Mutation p.L22F 0.91 deleterious(0.04) probably_damaging(0.949) TCGA-EE-A29D-06 1 120510782 120510782 G A NOTCH2 Silent p.P394P 0.15 TCGA-EE-A29D-06 1 12144533 12144533 G A TNFRSF8 Missense_Mutation p.E26K 0.86 tolerated(1) benign(0.002) TCGA-EE-A29D-06 1 1233952 1233952 C T ACAP3 Nonsense_Mutation p.W286* 0.38 TCGA-EE-A29D-06 1 1244951 1244951 T G PUSL1 Missense_Mutation p.F147L 0.26 tolerated(0.06) benign(0.082) TCGA-EE-A29D-06 1 1267594 1267594 C T TAS1R3 Missense_Mutation p.A228V 0.31 deleterious(0.02) benign(0.215) TCGA-EE-A29D-06 1 12887330 12887330 C T PRAMEF11 Nonsense_Mutation p.W176* 0.32 TCGA-EE-A29D-06 1 12979892 12979892 G A PRAMEF7 Missense_Mutation p.D362N 0.27 probably_damaging(0.999) TCGA-EE-A29D-06 1 13910401 13910401 C T PDPN Missense_Mutation p.P34L 0.23 tolerated_low_confidence(0.1) benign(0.116) TCGA-EE-A29D-06 1 14108622 14108622 C T PRDM2 Silent p.A1444A 0.34 TCGA-EE-A29D-06 1 143767214 143767214 G A PPIAL4G 3'UTR 0.63 TCGA-EE-A29D-06 1 143767737 143767737 C A PPIAL4G Missense_Mutation p.A38S 0.22 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-EE-A29D-06 1 145492339 145492339 C T LIX1L Silent p.I187I 0.23 TCGA-EE-A29D-06 1 145533450 145533450 C T ITGA10 Missense_Mutation p.R445C 0.47 deleterious(0.05) benign(0.055) TCGA-EE-A29D-06 1 145585654 145585654 C T PIAS3 3'UTR 0.38 TCGA-EE-A29D-06 1 147131132 147131132 G A ACP6 Missense_Mutation p.R168W 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 147381033 147381033 A T GJA8 Missense_Mutation p.Q317H 0.45 tolerated(0.21) possibly_damaging(0.764) TCGA-EE-A29D-06 1 148591227 148591227 A G NBPF15 Missense_Mutation p.K431R 0.50 tolerated(0.12) possibly_damaging(0.642) TCGA-EE-A29D-06 1 148932797 148932797 G A RP11-14N7.2 RNA 0.16 TCGA-EE-A29D-06 1 149882500 149882500 G A SV2A Missense_Mutation p.S278F 0.16 deleterious(0) probably_damaging(0.944) TCGA-EE-A29D-06 1 149902646 149902646 G A MTMR11 Intron 0.26 TCGA-EE-A29D-06 1 149902842 149902842 G A MTMR11 Missense_Mutation p.L436F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 149943100 149943100 G A OTUD7B Silent p.S55S 0.38 TCGA-EE-A29D-06 1 150337310 150337310 C T RPRD2 Silent p.S40S 0.44 TCGA-EE-A29D-06 1 150445246 150445246 C T RPRD2 Silent p.P1274P 0.24 TCGA-EE-A29D-06 1 150463097 150463097 C T TARS2 Silent p.T136T 0.47 TCGA-EE-A29D-06 1 150484099 150484099 C T ECM1 Missense_Mutation p.S319F 0.49 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A29D-06 1 151688402 151688402 C A CELF3 Missense_Mutation p.R32L 0.27 tolerated(0.06) benign(0.423) TCGA-EE-A29D-06 1 151739672 151739672 C T OAZ3 Silent p.L22L 0.34 TCGA-EE-A29D-06 1 151739673 151739673 C T OAZ3 Nonsense_Mutation p.Q23* 0.34 TCGA-EE-A29D-06 1 151773804 151773804 C T LINGO4 Silent p.G459G 0.15 TCGA-EE-A29D-06 1 151787517 151787517 C T RORC Missense_Mutation p.R228Q 0.58 tolerated(1) benign(0.001) TCGA-EE-A29D-06 1 152058190 152058190 C T TCHHL1 Silent p.Q656Q 0.43 TCGA-EE-A29D-06 1 152086421 152086421 G A TCHH Missense_Mutation p.R46W 0.42 unknown(0) TCGA-EE-A29D-06 1 152192218 152192218 G A HRNR Silent p.T629T 0.49 TCGA-EE-A29D-06 1 152277889 152277889 G A FLG Missense_Mutation p.S3158F 0.19 unknown(0) TCGA-EE-A29D-06 1 152279796 152279796 T C FLG Silent p.Q2522Q 0.52 TCGA-EE-A29D-06 1 152279971 152279971 C T FLG Missense_Mutation p.G2464E 0.13 benign(0.287) TCGA-EE-A29D-06 1 152280124 152280124 G A FLG Missense_Mutation p.S2413F 0.35 probably_damaging(0.983) TCGA-EE-A29D-06 1 152280220 152280220 T C FLG Missense_Mutation p.Q2381R 0.43 benign(0.069) TCGA-EE-A29D-06 1 152281535 152281535 G A FLG Missense_Mutation p.L1943F 0.24 possibly_damaging(0.587) TCGA-EE-A29D-06 1 152282093 152282093 C T FLG Missense_Mutation p.E1757K 0.37 benign(0.292) TCGA-EE-A29D-06 1 152283351 152283351 G A FLG Silent p.S1337S 0.38 TCGA-EE-A29D-06 1 152283846 152283846 C T FLG Silent p.R1172R 0.18 TCGA-EE-A29D-06 1 152283847 152283847 C T FLG Missense_Mutation p.R1172K 0.18 benign(0.067) TCGA-EE-A29D-06 1 152285778 152285778 C T FLG Silent p.Q528Q 0.36 TCGA-EE-A29D-06 1 152285890 152285890 C T FLG Missense_Mutation p.G491E 0.40 probably_damaging(0.978) TCGA-EE-A29D-06 1 152326736 152326736 T C FLG2 Missense_Mutation p.T1176A 0.39 unknown(0) TCGA-EE-A29D-06 1 152326950 152326950 T C FLG2 Silent p.Q1104Q 0.55 TCGA-EE-A29D-06 1 152484391 152484391 G A LCE5A 3'UTR 0.38 TCGA-EE-A29D-06 1 152538541 152538541 G A LCE3E Silent p.S48S 0.20 TCGA-EE-A29D-06 1 152882400 152882400 C T IVL Missense_Mutation p.P43S 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A29D-06 1 153012551 153012551 G A SPRR2D 3'UTR 0.52 TCGA-EE-A29D-06 1 153122441 153122441 G A SPRR2G Missense_Mutation p.P49L 0.56 unknown(0) TCGA-EE-A29D-06 1 153177331 153177331 G A LELP1 Missense_Mutation p.E50K 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.801) TCGA-EE-A29D-06 1 153277427 153277427 C T PGLYRP3 Silent p.K124K 0.33 TCGA-EE-A29D-06 1 153303098 153303098 G A PGLYRP4 3'UTR 0.69 TCGA-EE-A29D-06 1 153410677 153410677 G A S100A7L2 Silent p.F54F 0.22 TCGA-EE-A29D-06 1 153410754 153410754 G A S100A7L2 Missense_Mutation p.R29C 0.19 deleterious(0) benign(0.003) TCGA-EE-A29D-06 1 153615498 153615498 A G CHTOP Intron 0.57 TCGA-EE-A29D-06 1 153719773 153719773 G A INTS3 Missense_Mutation p.E151K 0.20 deleterious(0) probably_damaging(0.915) TCGA-EE-A29D-06 1 153909204 153909204 C T DENND4B Silent p.R751R 0.29 TCGA-EE-A29D-06 1 153924114 153924114 G A CRTC2 Silent p.S342S 0.48 TCGA-EE-A29D-06 1 154091172 154091172 C T NUP210L Missense_Mutation p.G480E 0.17 tolerated(0.85) benign(0.007) TCGA-EE-A29D-06 1 154091173 154091173 C T NUP210L Missense_Mutation p.G480R 0.17 tolerated(0.41) benign(0.439) TCGA-EE-A29D-06 1 154492803 154492803 G A TDRD10 Silent p.K55K 0.45 TCGA-EE-A29D-06 1 154492804 154492804 G A TDRD10 Missense_Mutation p.D56N 0.46 tolerated(0.12) possibly_damaging(0.854) TCGA-EE-A29D-06 1 154516556 154516556 C T TDRD10 Silent p.T207T 0.56 TCGA-EE-A29D-06 1 154522822 154522822 G A UBE2Q1 3'UTR 0.38 TCGA-EE-A29D-06 1 154966191 154966191 G A LENEP Nonsense_Mutation p.W36* 0.36 TCGA-EE-A29D-06 1 155015275 155015275 C T DCST1 Silent p.S319S 0.32 TCGA-EE-A29D-06 1 155041574 155041574 A C EFNA4 Missense_Mutation p.Q183H 0.41 tolerated_low_confidence(0.11) benign(0) TCGA-EE-A29D-06 1 155170709 155170709 C T THBS3 Silent p.G509G 0.14 TCGA-EE-A29D-06 1 155188675 155188675 G A GBAP1 RNA 0.39 TCGA-EE-A29D-06 1 155205541 155205541 G A GBA Missense_Mutation p.P440L 0.66 deleterious(0) possibly_damaging(0.893) TCGA-EE-A29D-06 1 155208037 155208037 G A GBA Missense_Mutation p.P217S 0.23 deleterious(0.02) probably_damaging(0.972) TCGA-EE-A29D-06 1 155263135 155263135 C T PKLR Splice_Site p.X424_splice 0.21 TCGA-EE-A29D-06 1 155313240 155313240 G A ASH1L Missense_Mutation p.P2720S 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 155721887 155721887 C T GON4L Missense_Mutation p.G2112R 0.11 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-EE-A29D-06 1 155727095 155727095 T G GON4L Missense_Mutation p.Q1758P 0.27 tolerated(0.19) benign(0.293) TCGA-EE-A29D-06 1 155753858 155753858 G A GON4L Missense_Mutation p.S604F 0.58 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 1 155837856 155837856 G A SYT11 Silent p.E45E 0.60 TCGA-EE-A29D-06 1 155911667 155911667 G A RXFP4 Missense_Mutation p.G56E 0.39 deleterious(0.03) probably_damaging(1) TCGA-EE-A29D-06 1 155935490 155935490 G A ARHGEF2 Silent p.L134L 0.13 TCGA-EE-A29D-06 1 156593776 156593776 G A HAPLN2 Missense_Mutation p.G88E 0.44 deleterious(0.01) possibly_damaging(0.889) TCGA-EE-A29D-06 1 156618425 156618425 G A BCAN Missense_Mutation p.E279K 0.23 tolerated(0.17) possibly_damaging(0.612) TCGA-EE-A29D-06 1 157068665 157068665 G A ETV3L Silent p.L107L 0.32 TCGA-EE-A29D-06 1 157551414 157551414 C T FCRL4 Missense_Mutation p.G386S 0.61 tolerated(0.12) benign(0.008) TCGA-EE-A29D-06 1 157771797 157771797 G A FCRL1 Missense_Mutation p.S265F 0.08 deleterious(0.01) probably_damaging(0.929) TCGA-EE-A29D-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.16 deleterious(0.05) benign(0.049) TCGA-EE-A29D-06 1 158435393 158435393 C T OR10K1 Silent p.V14V 0.38 TCGA-EE-A29D-06 1 158585192 158585192 C T SPTA1 Missense_Mutation p.R2201K 0.20 tolerated(0.13) probably_damaging(0.997) TCGA-EE-A29D-06 1 158596668 158596668 C T SPTA1 Missense_Mutation p.E1932K 0.37 deleterious(0.02) benign(0.122) TCGA-EE-A29D-06 1 158669536 158669536 T A OR6K2 Nonsense_Mutation p.K303* 0.09 TCGA-EE-A29D-06 1 158687515 158687515 G A OR6K3 Missense_Mutation p.R131C 0.21 deleterious(0) benign(0.119) TCGA-EE-A29D-06 1 158746549 158746549 G A OR6N2 Missense_Mutation p.R293C 0.50 deleterious(0) benign(0.273) TCGA-EE-A29D-06 1 159170697 159170697 G A CADM3 Silent p.K428K 0.15 TCGA-EE-A29D-06 1 159170745 159170745 G A CADM3 3'UTR 0.22 TCGA-EE-A29D-06 1 159176192 159176192 C T DARC Silent p.L323L 0.52 TCGA-EE-A29D-06 1 159283485 159283485 G A OR10J3 Missense_Mutation p.S322F 0.47 deleterious_low_confidence(0) benign(0.003) TCGA-EE-A29D-06 1 159409735 159409735 G A OR10J1 Missense_Mutation p.D63N 0.20 tolerated(0.11) possibly_damaging(0.657) TCGA-EE-A29D-06 1 159410433 159410433 G A OR10J1 Silent p.L295L 0.42 TCGA-EE-A29D-06 1 159683214 159683214 G A CRP 3'UTR 0.35 TCGA-EE-A29D-06 1 159778041 159778041 G A FCRL6 Nonsense_Mutation p.W42* 0.54 TCGA-EE-A29D-06 1 159784050 159784050 C T FCRL6 Missense_Mutation p.S372F 0.75 deleterious(0) benign(0.004) TCGA-EE-A29D-06 1 159923209 159923209 G A SLAMF9 Missense_Mutation p.S94F 0.32 deleterious(0) possibly_damaging(0.863) TCGA-EE-A29D-06 1 160323917 160323917 C T NCSTN Missense_Mutation p.L397F 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A29D-06 1 160607113 160607113 G A SLAMF1 Missense_Mutation p.R95C 0.48 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A29D-06 1 160771773 160771773 C T LY9 Intron 0.14 TCGA-EE-A29D-06 1 160853229 160853229 G A ITLN1 Missense_Mutation p.P49L 0.08 tolerated(0.47) benign(0.006) TCGA-EE-A29D-06 1 161072116 161072116 G A PFDN2 Missense_Mutation p.S42F 0.29 deleterious(0) probably_damaging(0.921) TCGA-EE-A29D-06 1 161090352 161090352 C T NIT1 Missense_Mutation p.R261C 0.66 tolerated(0.21) benign(0.001) TCGA-EE-A29D-06 1 161167843 161167843 G A ADAMTS4 Missense_Mutation p.P192L 0.71 deleterious(0.02) benign(0.418) TCGA-EE-A29D-06 1 161254249 161254249 G A PCP4L1 Missense_Mutation p.R62K 0.34 tolerated(1) benign(0.001) TCGA-EE-A29D-06 1 161476158 161476158 C T FCGR2A Silent p.P47P 0.55 TCGA-EE-A29D-06 1 161479651 161479651 G A FCGR2A Missense_Mutation p.G136R 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 16200890 16200890 G A SPEN Intron 0.26 TCGA-EE-A29D-06 1 16257107 16257107 C T SPEN Missense_Mutation p.R1458C 0.87 probably_damaging(0.997) TCGA-EE-A29D-06 1 16360142 16360142 G A CLCNKA Missense_Mutation p.A685T 0.79 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A29D-06 1 16388684 16388684 A C FAM131C Missense_Mutation p.C60G 0.74 deleterious(0.01) possibly_damaging(0.804) TCGA-EE-A29D-06 1 165513717 165513717 G A LRRC52 Missense_Mutation p.E62K 0.51 tolerated(0.24) benign(0.048) TCGA-EE-A29D-06 1 166891849 166891849 G A ILDR2 Nonsense_Mutation p.R398* 0.22 TCGA-EE-A29D-06 1 166927016 166927016 C T ILDR2 Silent p.T123T 0.32 TCGA-EE-A29D-06 1 166927205 166927205 G A ILDR2 Silent p.S60S 0.54 TCGA-EE-A29D-06 1 167023482 167023482 G A GPA33 3'UTR 0.43 TCGA-EE-A29D-06 1 167096242 167096242 G A DUSP27 Missense_Mutation p.R625Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 168215983 168215983 C T SFT2D2 3'UTR 0.27 TCGA-EE-A29D-06 1 168282270 168282270 G A TBX19 3'UTR 0.10 TCGA-EE-A29D-06 1 169346076 169346076 C T BLZF1 Silent p.F109F 0.32 TCGA-EE-A29D-06 1 169510677 169510677 G A F5 Silent p.L1217L 0.37 TCGA-EE-A29D-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.45 deleterious(0.02) benign(0.036) TCGA-EE-A29D-06 1 169694922 169694922 G A SELE Missense_Mutation p.S599L 0.20 tolerated(0.08) benign(0.03) TCGA-EE-A29D-06 1 169696888 169696888 G A SELE Missense_Mutation p.S487F 0.38 deleterious(0) benign(0.178) TCGA-EE-A29D-06 1 169697229 169697229 C T SELE Missense_Mutation p.E417K 0.22 tolerated(0.42) benign(0.02) TCGA-EE-A29D-06 1 169697230 169697230 C T SELE Silent p.G416G 0.22 TCGA-EE-A29D-06 1 169701995 169701995 G A SELE Missense_Mutation p.S61F 0.43 deleterious(0.02) possibly_damaging(0.819) TCGA-EE-A29D-06 1 170916685 170916685 C T MROH9 Silent p.L15L 0.48 TCGA-EE-A29D-06 1 171544123 171544123 C T PRRC2C Missense_Mutation p.P2269S 0.24 probably_damaging(0.998) TCGA-EE-A29D-06 1 172417669 172417669 A T C1orf105 Nonsense_Mutation p.K66* 0.46 TCGA-EE-A29D-06 1 173493234 173493234 C T SLC9C2 Splice_Site p.X839_splice 0.52 TCGA-EE-A29D-06 1 173703100 173703100 C T KLHL20 Missense_Mutation p.P91L 0.15 deleterious(0.01) benign(0.109) TCGA-EE-A29D-06 1 175067612 175067612 G A TNN Missense_Mutation p.G667E 0.22 tolerated(0.19) benign(0.279) TCGA-EE-A29D-06 1 175116091 175116091 G A TNN Missense_Mutation p.G1262R 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 175355239 175355239 C T TNR Missense_Mutation p.R569Q 0.21 tolerated(0.42) benign(0.001) TCGA-EE-A29D-06 1 17575650 17575650 C T PADI3 Silent p.I6I 0.14 TCGA-EE-A29D-06 1 176525627 176525627 C T PAPPA2 Nonsense_Mutation p.R57* 0.53 TCGA-EE-A29D-06 1 176640217 176640217 C T PAPPA2 Silent p.T701T 0.22 TCGA-EE-A29D-06 1 176668303 176668303 C A PAPPA2 Nonsense_Mutation p.Y938* 0.45 TCGA-EE-A29D-06 1 176681065 176681065 G A PAPPA2 Missense_Mutation p.R1249K 0.51 tolerated(0.8) benign(0.002) TCGA-EE-A29D-06 1 176734925 176734925 G A PAPPA2 Silent p.R1425R 0.68 TCGA-EE-A29D-06 1 176811564 176811564 G A PAPPA2 Missense_Mutation p.D1784N 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 1 17682946 17682946 G A PADI4 Missense_Mutation p.G517E 0.50 tolerated(0.11) possibly_damaging(0.773) TCGA-EE-A29D-06 1 176833456 176833456 G A ASTN1 Silent p.I1283I 0.37 TCGA-EE-A29D-06 1 17685796 17685796 G A PADI4 Missense_Mutation p.E551K 0.39 tolerated(0.06) possibly_damaging(0.636) TCGA-EE-A29D-06 1 176992577 176992577 G A ASTN1 Silent p.L467L 0.12 TCGA-EE-A29D-06 1 177199208 177199208 C T BRINP2 Missense_Mutation p.H66Y 0.43 tolerated(0.06) benign(0.005) TCGA-EE-A29D-06 1 177225162 177225162 G A BRINP2 Missense_Mutation p.G126E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 177247779 177247779 G A BRINP2 Missense_Mutation p.D365N 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 1 177247848 177247848 C T BRINP2 Missense_Mutation p.R388W 0.53 deleterious(0.03) benign(0.306) TCGA-EE-A29D-06 1 177249620 177249620 C T BRINP2 Silent p.F436F 0.52 TCGA-EE-A29D-06 1 178433445 178433445 C T RASAL2 Silent p.S1095S 0.34 TCGA-EE-A29D-06 1 178491468 178491468 C T TEX35 Missense_Mutation p.P199S 0.21 tolerated_low_confidence(0.36) benign(0.001) TCGA-EE-A29D-06 1 179337940 179337940 C G AXDND1 Missense_Mutation p.P35A 0.10 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A29D-06 1 179497525 179497525 C T AXDND1 Missense_Mutation p.H892Y 0.18 tolerated(0.17) benign(0.403) TCGA-EE-A29D-06 1 179520354 179520354 G A NPHS2 Missense_Mutation p.P369L 0.43 tolerated(0.15) benign(0.003) TCGA-EE-A29D-06 1 179533844 179533844 G A NPHS2 Missense_Mutation p.S120F 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 179561850 179561850 G A TDRD5 Missense_Mutation p.E34K 0.55 deleterious(0) probably_damaging(0.99) TCGA-EE-A29D-06 1 179631268 179631268 G A TDRD5 Silent p.L784L 0.46 TCGA-EE-A29D-06 1 179659850 179659850 C T TDRD5 Silent p.I960I 0.52 TCGA-EE-A29D-06 1 180063461 180063461 G A CEP350 Missense_Mutation p.E2741K 0.37 possibly_damaging(0.455) TCGA-EE-A29D-06 1 181687256 181687256 G A CACNA1E Missense_Mutation p.G531R 0.31 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 1 181689961 181689961 C T CACNA1E Silent p.T642T 0.23 TCGA-EE-A29D-06 1 181702850 181702850 G A CACNA1E Missense_Mutation p.D1076N 0.16 tolerated(0.52) benign(0.011) TCGA-EE-A29D-06 1 181727217 181727217 C T CACNA1E Silent p.I1488I 0.22 TCGA-EE-A29D-06 1 181767826 181767826 C T CACNA1E Silent p.I2266I 0.50 TCGA-EE-A29D-06 1 183933224 183933224 G A COLGALT2 Intron 0.49 TCGA-EE-A29D-06 1 184764395 184764395 C T FAM129A Missense_Mutation p.E835K 0.26 tolerated_low_confidence(0.06) benign(0.049) TCGA-EE-A29D-06 1 185956672 185956672 C T HMCN1 Missense_Mutation p.S1015F 0.39 probably_damaging(0.998) TCGA-EE-A29D-06 1 186275896 186275896 G A PRG4 Missense_Mutation p.E349K 0.37 unknown(0) TCGA-EE-A29D-06 1 186948542 186948542 C T PLA2G4A Missense_Mutation p.P686S 0.38 tolerated(1) benign(0.003) TCGA-EE-A29D-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.58 deleterious(0) possibly_damaging(0.871) TCGA-EE-A29D-06 1 192547539 192547539 C T RGS1 Intron 0.26 TCGA-EE-A29D-06 1 196438156 196438156 C T KCNT2 Missense_Mutation p.E143K 0.14 deleterious(0) probably_damaging(0.965) TCGA-EE-A29D-06 1 196658634 196658634 G A CFH Missense_Mutation p.G350E 0.07 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 1 196695995 196695995 G A CFH Missense_Mutation p.E721K 0.14 deleterious(0.01) benign(0.232) TCGA-EE-A29D-06 1 196857301 196857301 C T CFHR4 Silent p.V7V 0.57 TCGA-EE-A29D-06 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.13 tolerated(0.27) possibly_damaging(0.788) TCGA-EE-A29D-06 1 196920078 196920078 G A CFHR2 Missense_Mutation p.G117E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 197032154 197032154 C T F13B Missense_Mutation p.G33E 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 197316467 197316467 C T CRB1 Intron 0.17 TCGA-EE-A29D-06 1 197446918 197446918 G A CRB1 Missense_Mutation p.G1377E 0.19 deleterious(0) probably_damaging(0.971) TCGA-EE-A29D-06 1 201017723 201017723 C T CACNA1S Silent p.K1476K 0.60 TCGA-EE-A29D-06 1 201039419 201039419 T G CACNA1S Missense_Mutation p.I781L 0.51 tolerated(0.08) benign(0.032) TCGA-EE-A29D-06 1 201054598 201054598 C T CACNA1S Silent p.Q372Q 0.16 TCGA-EE-A29D-06 1 201060904 201060904 C T CACNA1S Silent p.L186L 0.57 TCGA-EE-A29D-06 1 201063033 201063033 C T CACNA1S Silent p.L125L 0.44 TCGA-EE-A29D-06 1 201184907 201184907 G A IGFN1 Missense_Mutation p.S3079N 0.50 benign(0.236) TCGA-EE-A29D-06 1 201252829 201252829 C T PKP1 5'UTR 0.17 TCGA-EE-A29D-06 1 201356080 201356080 C T LAD1 Missense_Mutation p.E137K 0.33 tolerated(0.09) benign(0.133) TCGA-EE-A29D-06 1 201869436 201869436 C T LMOD1 Silent p.E235E 0.28 TCGA-EE-A29D-06 1 201974949 201974949 C T RNPEP 3'UTR 0.45 TCGA-EE-A29D-06 1 202407211 202407211 C T PPP1R12B Intron 0.22 TCGA-EE-A29D-06 1 202711822 202711822 G A KDM5B Missense_Mutation p.S812F 0.53 deleterious(0) probably_damaging(0.948) TCGA-EE-A29D-06 1 203186055 203186055 C T CHIT1 Missense_Mutation p.V455M 0.14 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 1 204006327 204006327 G A LINC00303 Intron 0.67 TCGA-EE-A29D-06 1 204091372 204091372 C G SOX13 Missense_Mutation p.S290C 0.67 deleterious(0) probably_damaging(0.945) TCGA-EE-A29D-06 1 204197961 204197961 G T PLEKHA6 Missense_Mutation p.P927H 0.28 deleterious(0) probably_damaging(0.987) TCGA-EE-A29D-06 1 204586827 204586827 G A LRRN2 3'UTR 0.29 TCGA-EE-A29D-06 1 204951005 204951005 G A NFASC Nonsense_Mutation p.W776* 0.19 TCGA-EE-A29D-06 1 204971857 204971857 C T NFASC Silent p.I1090I 0.25 TCGA-EE-A29D-06 1 205027170 205027170 G A CNTN2 Silent p.R64R 0.60 TCGA-EE-A29D-06 1 205069147 205069147 G A RBBP5 Silent p.I266I 0.18 TCGA-EE-A29D-06 1 205129295 205129295 G A DSTYK Silent p.V684V 0.34 TCGA-EE-A29D-06 1 205210689 205210689 C T TMCC2 Silent p.F88F 0.13 TCGA-EE-A29D-06 1 205273347 205273347 G A NUAK2 Missense_Mutation p.S373L 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29D-06 1 205739417 205739417 G A RAB7L1 3'UTR 0.31 TCGA-EE-A29D-06 1 205768148 205768148 G A SLC41A1 Missense_Mutation p.P212S 0.15 tolerated(0.64) benign(0.001) TCGA-EE-A29D-06 1 205890968 205890968 G A SLC26A9 Missense_Mutation p.S594F 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A29D-06 1 206241534 206241534 C T C1orf186 Silent p.R85R 0.49 TCGA-EE-A29D-06 1 206821496 206821496 C T DYRK3 Missense_Mutation p.S318F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 207087140 207087140 C T FAIM3 Missense_Mutation p.G113R 0.17 deleterious(0) probably_damaging(0.985) TCGA-EE-A29D-06 1 207105086 207105086 C T PIGR Silent p.R690R 0.37 TCGA-EE-A29D-06 1 207110999 207110999 C T PIGR Silent p.R162R 0.44 TCGA-EE-A29D-06 1 207796354 207796354 G A CR1 Silent p.T2431T 0.62 TCGA-EE-A29D-06 1 209796985 209796985 C T LAMB3 Silent p.Q741Q 0.34 TCGA-EE-A29D-06 1 209799204 209799204 C T LAMB3 Missense_Mutation p.D589N 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29D-06 1 209935900 209935900 C T TRAF3IP3 Missense_Mutation p.P129L 0.59 tolerated(0.19) benign(0.001) TCGA-EE-A29D-06 1 209936438 209936438 G A TRAF3IP3 Splice_Site p.X192_splice 0.62 TCGA-EE-A29D-06 1 209961873 209961873 G A IRF6 Silent p.I432I 0.21 TCGA-EE-A29D-06 1 209969715 209969715 G A IRF6 Silent p.P119P 0.53 TCGA-EE-A29D-06 1 21009370 21009370 G A KIF17 Silent p.L747L 0.28 TCGA-EE-A29D-06 1 210761279 210761279 C T HHAT Silent p.L362L 0.40 TCGA-EE-A29D-06 1 214171386 214171386 C T PROX1 Missense_Mutation p.S503F 0.40 tolerated(0.7) benign(0.139) TCGA-EE-A29D-06 1 214171387 214171387 C T PROX1 Silent p.S503S 0.38 TCGA-EE-A29D-06 1 215298058 215298058 C T KCNK2 Missense_Mutation p.S147F 0.55 deleterious(0) probably_damaging(0.917) TCGA-EE-A29D-06 1 215408272 215408272 C T KCNK2 Silent p.F355F 0.68 TCGA-EE-A29D-06 1 215408381 215408381 G A KCNK2 Missense_Mutation p.E392K 0.09 deleterious_low_confidence(0.01) benign(0.339) TCGA-EE-A29D-06 1 215793565 215793565 C T KCTD3 Missense_Mutation p.P685S 0.58 tolerated_low_confidence(0.16) benign(0.099) TCGA-EE-A29D-06 1 215848027 215848027 G A USH2A Missense_Mutation p.S4409F 0.16 probably_damaging(0.949) TCGA-EE-A29D-06 1 215853493 215853493 T C USH2A Missense_Mutation p.K4098E 0.57 benign(0.013) TCGA-EE-A29D-06 1 216373131 216373131 C T USH2A Missense_Mutation p.D1217N 0.65 benign(0) TCGA-EE-A29D-06 1 217604443 217604443 G A GPATCH2 3'UTR 0.23 TCGA-EE-A29D-06 1 21934823 21934823 G A RAP1GAP Silent p.L457L 0.28 TCGA-EE-A29D-06 1 220312371 220312371 C T IARS2 Missense_Mutation p.L733F 0.18 deleterious(0.05) benign(0.03) TCGA-EE-A29D-06 1 22169793 22169793 G A HSPG2 Missense_Mutation p.P2919S 0.61 benign(0.284) TCGA-EE-A29D-06 1 223284141 223284141 G A TLR5 Nonsense_Mutation p.Q745* 0.20 TCGA-EE-A29D-06 1 223284957 223284957 G A TLR5 Missense_Mutation p.P473S 0.39 tolerated(0.42) benign(0.001) TCGA-EE-A29D-06 1 223568698 223568698 G A C1orf65 3'UTR 0.15 TCGA-EE-A29D-06 1 223990301 223990301 G A TP53BP2 Intron 0.52 TCGA-EE-A29D-06 1 226127470 226127470 G A LEFTY2 Silent p.S161S 0.78 TCGA-EE-A29D-06 1 227169749 227169749 C T ADCK3 Missense_Mutation p.S251F 0.60 deleterious(0.02) benign(0.052) TCGA-EE-A29D-06 1 228033810 228033810 C A PRSS38 Silent p.I294I 0.60 TCGA-EE-A29D-06 1 228456379 228456379 G A OBSCN Silent p.S1854S 0.51 TCGA-EE-A29D-06 1 228509044 228509044 G A OBSCN Splice_Site p.X5792_splice 0.61 TCGA-EE-A29D-06 1 228525032 228525032 C T OBSCN Missense_Mutation p.S6540F 0.59 probably_damaging(0.999) TCGA-EE-A29D-06 1 228547871 228547871 G A OBSCN Intron 0.58 TCGA-EE-A29D-06 1 22920043 22920043 C T EPHA8 Silent p.T489T 0.19 TCGA-EE-A29D-06 1 22965364 22965364 G A C1QA Missense_Mutation p.G68R 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 1 22987483 22987483 C T C1QB Silent p.I122I 0.88 TCGA-EE-A29D-06 1 231339623 231339623 C T TRIM67 Silent p.V515V 0.55 TCGA-EE-A29D-06 1 231506358 231506358 G A EGLN1 Silent p.F366F 0.60 TCGA-EE-A29D-06 1 233190031 233190031 C T PCNXL2 Missense_Mutation p.R1445Q 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 233489632 233489632 G A MLK4 Missense_Mutation p.V356I 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 233489663 233489663 C T MLK4 Missense_Mutation p.P366L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 233518193 233518193 C T MLK4 Silent p.S949S 0.28 TCGA-EE-A29D-06 1 233802629 233802629 C T KCNK1 Missense_Mutation p.S215F 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 1 234444858 234444858 G A SLC35F3 Missense_Mutation p.R207Q 0.13 tolerated(0.14) benign(0.021) TCGA-EE-A29D-06 1 234565060 234565060 G A TARBP1 Missense_Mutation p.S961F 0.07 deleterious(0) possibly_damaging(0.736) TCGA-EE-A29D-06 1 236740197 236740197 C T HEATR1 Silent p.R936R 0.50 TCGA-EE-A29D-06 1 236902628 236902628 C T ACTN2 Silent p.I301I 0.39 TCGA-EE-A29D-06 1 236902629 236902629 C T ACTN2 Missense_Mutation p.P302S 0.39 tolerated(0.09) possibly_damaging(0.888) TCGA-EE-A29D-06 1 237919623 237919623 G A RYR2 Silent p.Q3727Q 0.65 TCGA-EE-A29D-06 1 237947165 237947165 G A RYR2 Silent p.A4051A 0.54 TCGA-EE-A29D-06 1 240071960 240071960 G A CHRM3 Silent p.R403R 0.43 TCGA-EE-A29D-06 1 240256759 240256759 C T FMN2 Silent p.S450S 0.10 TCGA-EE-A29D-06 1 240286514 240286514 G A FMN2 Missense_Mutation p.E551K 0.13 unknown(0) TCGA-EE-A29D-06 1 240286571 240286571 C T FMN2 Missense_Mutation p.L570F 0.09 unknown(0) TCGA-EE-A29D-06 1 240656257 240656257 C T GREM2 3'UTR 0.23 TCGA-EE-A29D-06 1 241099956 241099956 G A RGS7 Missense_Mutation p.P93S 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29D-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 1 241758059 241758059 G A KMO 3'UTR 0.34 TCGA-EE-A29D-06 1 245850988 245850988 C G KIF26B Missense_Mutation p.S1568W 0.23 deleterious(0.01) unknown(0) TCGA-EE-A29D-06 1 247587637 247587637 C T NLRP3 Missense_Mutation p.L298F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 247597430 247597430 G A NLRP3 Missense_Mutation p.E785K 0.59 tolerated(0.51) benign(0.001) TCGA-EE-A29D-06 1 247599340 247599340 C T NLRP3 Missense_Mutation p.S856F 0.25 deleterious(0.02) benign(0.013) TCGA-EE-A29D-06 1 247614805 247614805 G A OR2B11 Silent p.S160S 0.22 TCGA-EE-A29D-06 1 247655350 247655350 G A OR2W5 RNA 0.16 TCGA-EE-A29D-06 1 247836279 247836279 C T OR13G1 Missense_Mutation p.G22E 0.48 tolerated(0.32) benign(0.002) TCGA-EE-A29D-06 1 247902152 247902152 C T OR14K1 Missense_Mutation p.S79F 0.56 tolerated(0.13) benign(0.012) TCGA-EE-A29D-06 1 247921025 247921025 G A OR1C1 Silent p.I228I 0.58 TCGA-EE-A29D-06 1 247921291 247921291 G A OR1C1 Missense_Mutation p.L140F 0.17 deleterious(0.05) benign(0.071) TCGA-EE-A29D-06 1 247921673 247921673 G A OR1C1 Silent p.F12F 0.56 TCGA-EE-A29D-06 1 247978233 247978233 A G OR14A16 Silent p.L267L 0.23 TCGA-EE-A29D-06 1 248084466 248084466 G A OR2T8 Nonsense_Mutation p.W49* 0.44 TCGA-EE-A29D-06 1 248084478 248084478 C T OR2T8 Silent p.L53L 0.31 TCGA-EE-A29D-06 1 248112192 248112192 C T OR2L8 Silent p.F11F 0.63 TCGA-EE-A29D-06 1 248112339 248112339 C T OR2L8 Silent p.F60F 0.14 TCGA-EE-A29D-06 1 248128867 248128867 C T OR2AK2 Silent p.L78L 0.55 TCGA-EE-A29D-06 1 248129311 248129311 C T OR2AK2 Silent p.F226F 0.32 TCGA-EE-A29D-06 1 248201541 248201541 C T OR2L2 5'UTR 0.17 TCGA-EE-A29D-06 1 248343914 248343914 C T OR2M2 Silent p.F209F 0.16 TCGA-EE-A29D-06 1 248343979 248343979 G A OR2M2 Missense_Mutation p.G231E 0.69 tolerated(0.12) benign(0.073) TCGA-EE-A29D-06 1 248344280 248344280 C T OR2M2 Silent p.S331S 0.46 TCGA-EE-A29D-06 1 248402747 248402747 G A OR2M4 Missense_Mutation p.E173K 0.14 tolerated(0.12) benign(0.06) TCGA-EE-A29D-06 1 248436726 248436726 G A OR2T33 Missense_Mutation p.P131S 0.06 tolerated(0.16) benign(0.049) TCGA-EE-A29D-06 1 248436970 248436970 C T OR2T33 Nonsense_Mutation p.W49* 0.10 TCGA-EE-A29D-06 1 248512786 248512786 C T OR14C36 Missense_Mutation p.S237F 0.14 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A29D-06 1 248551191 248551191 C T OR2T6 Silent p.F94F 0.53 TCGA-EE-A29D-06 1 248551788 248551788 G A OR2T6 Silent p.R293R 0.50 TCGA-EE-A29D-06 1 248570147 248570147 G A OR2T1 Silent p.R284R 0.10 TCGA-EE-A29D-06 1 248616751 248616751 C T OR2T2 Missense_Mutation p.S218F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 248737626 248737626 C T OR2T34 Missense_Mutation p.V145M 0.27 deleterious(0.05) possibly_damaging(0.865) TCGA-EE-A29D-06 1 248737718 248737718 C T OR2T34 Missense_Mutation p.G114E 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 1 249211569 249211569 G A PGBD2 Silent p.L262L 0.68 TCGA-EE-A29D-06 1 2520012 2520012 G A FAM213B Silent p.G166G 0.86 TCGA-EE-A29D-06 1 2530201 2530201 G A MMEL1 Missense_Mutation p.T357I 0.61 tolerated(0.17) benign(0.015) TCGA-EE-A29D-06 1 25817909 25817909 G A TMEM57 Silent p.R542R 0.26 TCGA-EE-A29D-06 1 26110360 26110360 T C MAN1C1 3'UTR 0.88 TCGA-EE-A29D-06 1 26527421 26527421 G A CATSPER4 Missense_Mutation p.G363E 0.86 tolerated(0.25) benign(0.178) TCGA-EE-A29D-06 1 26694168 26694168 C T ZNF683 Missense_Mutation p.D79N 0.40 deleterious(0.03) benign(0.19) TCGA-EE-A29D-06 1 26752948 26752948 G A LIN28A Silent p.%3D 0.15 TCGA-EE-A29D-06 1 27333251 27333251 G A FAM46B Silent p.F154F 0.93 TCGA-EE-A29D-06 1 27660755 27660755 C T TMEM222 Silent p.L174L 0.86 TCGA-EE-A29D-06 1 27877948 27877948 G A AHDC1 Missense_Mutation p.P227S 0.32 tolerated_low_confidence(0.23) possibly_damaging(0.803) TCGA-EE-A29D-06 1 28833990 28833990 A G SNORA73B 5'Flank 0.35 TCGA-EE-A29D-06 1 29023460 29023460 G A GMEB1 Silent p.Q164Q 0.18 TCGA-EE-A29D-06 1 29609321 29609321 G A PTPRU Missense_Mutation p.E668K 0.82 tolerated(0.09) benign(0.029) TCGA-EE-A29D-06 1 32098175 32098175 G A PEF1 Silent p.F182F 0.42 TCGA-EE-A29D-06 1 32203334 32203334 G A BAI2 Missense_Mutation p.P932L 0.70 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 1 32207776 32207776 G A BAI2 Missense_Mutation p.S432F 0.47 deleterious(0) probably_damaging(0.985) TCGA-EE-A29D-06 1 32263882 32263882 C T SPOCD1 Missense_Mutation p.D691N 0.95 tolerated(0.28) benign(0.141) TCGA-EE-A29D-06 1 32676890 32676890 G A DCDC2B Missense_Mutation p.G95E 0.75 tolerated(1) benign(0.006) TCGA-EE-A29D-06 1 32828411 32828411 G A TSSK3 Missense_Mutation p.A37T 0.37 deleterious(0) possibly_damaging(0.758) TCGA-EE-A29D-06 1 33135134 33135134 C T RBBP4 Silent p.S312S 0.93 TCGA-EE-A29D-06 1 33235333 33235333 C T KIAA1522 Missense_Mutation p.R216W 0.24 deleterious(0) unknown(0) TCGA-EE-A29D-06 1 33631164 33631164 C T TRIM62 Missense_Mutation p.E138K 1.00 tolerated(0.8) benign(0.079) TCGA-EE-A29D-06 1 34008484 34008484 C T CSMD2 Missense_Mutation p.G2894E 0.83 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 1 34038290 34038290 A T CSMD2 Silent p.A2528A 0.87 TCGA-EE-A29D-06 1 36557677 36557677 C T ADPRHL2 Missense_Mutation p.S228F 0.85 deleterious(0.01) probably_damaging(0.93) TCGA-EE-A29D-06 1 36557678 36557678 C T ADPRHL2 Silent p.S228S 0.89 TCGA-EE-A29D-06 1 36564462 36564462 G A COL8A2 Missense_Mutation p.P274S 0.93 tolerated(0.41) unknown(0) TCGA-EE-A29D-06 1 36758296 36758296 C T THRAP3 Silent p.S672S 0.39 TCGA-EE-A29D-06 1 36758297 36758297 C T THRAP3 Missense_Mutation p.P673S 0.40 deleterious(0) possibly_damaging(0.611) TCGA-EE-A29D-06 1 39318076 39318076 G A RRAGC Silent p.T242T 0.86 TCGA-EE-A29D-06 1 39341322 39341322 C T GJA9 Missense_Mutation p.R150K 0.53 tolerated(0.12) benign(0.237) TCGA-EE-A29D-06 1 39799086 39799086 C T MACF1 Intron 0.35 TCGA-EE-A29D-06 1 40701717 40701717 C T RLF Missense_Mutation p.P448L 0.86 deleterious(0) probably_damaging(0.962) TCGA-EE-A29D-06 1 41948231 41948231 G A EDN2 Missense_Mutation p.P84S 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 43124106 43124106 C T PPIH 5'UTR 0.39 TCGA-EE-A29D-06 1 43393333 43393333 T G SLC2A1 Silent p.A407A 0.86 TCGA-EE-A29D-06 1 44149399 44149399 C T KDM4A Silent p.S593S 0.37 TCGA-EE-A29D-06 1 44437138 44437138 C T DPH2 Silent p.S188S 0.34 TCGA-EE-A29D-06 1 45973088 45973088 C T MMACHC Silent p.L48L 0.79 TCGA-EE-A29D-06 1 46810768 46810768 G T NSUN4 Missense_Mutation p.R130L 1.00 deleterious(0.01) benign(0.235) TCGA-EE-A29D-06 1 47279701 47279701 C T CYP4B1 Silent p.F247F 0.36 TCGA-EE-A29D-06 1 47395761 47395761 G A CYP4A11 3'UTR 1.00 TCGA-EE-A29D-06 1 47514289 47514289 G A CYP4X1 Nonsense_Mutation p.W420* 0.48 TCGA-EE-A29D-06 1 47548115 47548115 G A CYP4Z1 Silent p.E158E 0.29 TCGA-EE-A29D-06 1 47685578 47685578 C T TAL1 Silent p.G270G 0.89 TCGA-EE-A29D-06 1 51756260 51756260 C T TTC39A Missense_Mutation p.G439E 0.23 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 1 52344246 52344246 C T NRD1 Silent p.R14R 1.00 TCGA-EE-A29D-06 1 53555618 53555618 G A SLC1A7 Intron 0.32 TCGA-EE-A29D-06 1 54477832 54477832 C T LDLRAD1 Silent p.E108E 0.58 TCGA-EE-A29D-06 1 55148333 55148333 G A MROH7 Missense_Mutation p.G796R 0.50 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A29D-06 1 55266809 55266809 C T TTC22 Missense_Mutation p.D10N 0.35 deleterious(0) unknown(0) TCGA-EE-A29D-06 1 55464803 55464803 G A BSND 5'UTR 0.23 TCGA-EE-A29D-06 1 57257924 57257924 T C C1orf168 Missense_Mutation p.T188A 0.38 tolerated(0.32) benign(0.013) TCGA-EE-A29D-06 1 57258022 57258022 G A C1orf168 Missense_Mutation p.S155L 0.85 tolerated(0.05) benign(0.439) TCGA-EE-A29D-06 1 57351694 57351694 C T C8A Missense_Mutation p.S317L 0.58 deleterious(0) possibly_damaging(0.904) TCGA-EE-A29D-06 1 57373655 57373655 G A C8A Missense_Mutation p.E417K 0.37 tolerated(0.19) benign(0.052) TCGA-EE-A29D-06 1 57431583 57431583 C T C8B Silent p.V13V 0.82 TCGA-EE-A29D-06 1 57480770 57480770 C T DAB1 Missense_Mutation p.M410I 0.92 tolerated(0.48) benign(0.001) TCGA-EE-A29D-06 1 59248101 59248101 C T JUN Silent p.Q214Q 0.94 TCGA-EE-A29D-06 1 61872316 61872316 C T NFIA Missense_Mutation p.A491V 0.92 tolerated(0.17) possibly_damaging(0.81) TCGA-EE-A29D-06 1 6194297 6194297 C T CHD5 Missense_Mutation p.G1012D 0.31 deleterious(0.03) probably_damaging(0.984) TCGA-EE-A29D-06 1 62586944 62586944 C T INADL Missense_Mutation p.S1661L 0.46 deleterious(0.05) benign(0.008) TCGA-EE-A29D-06 1 62675881 62675881 G A L1TD1 Missense_Mutation p.E479K 0.96 deleterious(0.01) benign(0.134) TCGA-EE-A29D-06 1 63069664 63069664 A T ANGPTL3 Missense_Mutation p.K319M 0.82 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 1 64515365 64515365 T C ROR1 Missense_Mutation p.S56P 0.86 tolerated(0.2) benign(0.001) TCGA-EE-A29D-06 1 64606074 64606074 G A ROR1 Missense_Mutation p.R298Q 0.50 tolerated(0.06) probably_damaging(0.941) TCGA-EE-A29D-06 1 65268667 65268667 G A RAVER2 Missense_Mutation p.G372R 0.42 deleterious(0) possibly_damaging(0.828) TCGA-EE-A29D-06 1 66036324 66036324 C G LEPR Missense_Mutation p.P70R 0.35 tolerated(0.28) benign(0.001) TCGA-EE-A29D-06 1 67306349 67306349 C T WDR78 Missense_Mutation p.E433K 0.94 tolerated(0.19) benign(0.003) TCGA-EE-A29D-06 1 67816686 67816686 G A IL12RB2 Missense_Mutation p.G391E 0.86 tolerated(0.07) benign(0.263) TCGA-EE-A29D-06 1 70226005 70226005 G A LRRC7 Missense_Mutation p.E40K 0.86 deleterious(0) probably_damaging(0.985) TCGA-EE-A29D-06 1 71512661 71512661 G A PTGER3 Silent p.T200T 0.48 TCGA-EE-A29D-06 1 74507177 74507177 G A LRRIQ3 Nonsense_Mutation p.Q480* 0.21 TCGA-EE-A29D-06 1 74737299 74737299 C T FPGT-TNNI3K Silent p.I231I 0.10 TCGA-EE-A29D-06 1 74833598 74833598 C T FPGT-TNNI3K Missense_Mutation p.S538F 0.53 deleterious(0) probably_damaging(0.965) TCGA-EE-A29D-06 1 75036823 75036823 G A C1orf173 Missense_Mutation p.S1524F 0.58 tolerated(0.06) probably_damaging(0.948) TCGA-EE-A29D-06 1 75622659 75622659 C T LHX8 Missense_Mutation p.P298S 0.20 tolerated(0.16) benign(0.001) TCGA-EE-A29D-06 1 75766337 75766337 G A SLC44A5 Silent p.F45F 0.51 TCGA-EE-A29D-06 1 79002193 79002193 C T PTGFR Missense_Mutation p.P301S 0.91 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 1 8421934 8421934 C T RERE Silent p.K635K 0.26 TCGA-EE-A29D-06 1 86252056 86252056 G A COL24A1 Missense_Mutation p.P1347L 0.93 tolerated(0.15) benign(0.033) TCGA-EE-A29D-06 1 86252057 86252057 G A COL24A1 Missense_Mutation p.P1347S 0.92 tolerated(0.25) benign(0.008) TCGA-EE-A29D-06 1 86590675 86590675 C T COL24A1 Silent p.R448R 0.50 TCGA-EE-A29D-06 1 86905967 86905967 C T CLCA2 Missense_Mutation p.S447L 0.38 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A29D-06 1 89585970 89585970 C T GBP2 Missense_Mutation p.G107D 0.43 deleterious(0.02) benign(0.348) TCGA-EE-A29D-06 1 89585971 89585971 C T GBP2 Missense_Mutation p.G107S 0.43 deleterious(0.04) benign(0.378) TCGA-EE-A29D-06 1 89587621 89587621 G A GBP2 Missense_Mutation p.P10L 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 1 89587622 89587622 G A GBP2 Missense_Mutation p.P10S 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 1 91861880 91861880 C T HFM1 Missense_Mutation p.E52K 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.687) TCGA-EE-A29D-06 1 9416028 9416028 C T SPSB1 Silent p.L26L 0.36 TCGA-EE-A29D-06 1 94564538 94564538 C T ABCA4 Missense_Mutation p.G194R 0.79 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A29D-06 1 98060710 98060710 G A DPYD Missense_Mutation p.P288L 0.44 deleterious(0) possibly_damaging(0.862) TCGA-EE-A29D-06 20 1286066 1286066 C T SNPH Missense_Mutation p.P285S 0.16 tolerated(0.42) benign(0.002) TCGA-EE-A29D-06 20 1456749 1456749 G A SIRPB2 3'UTR 0.31 TCGA-EE-A29D-06 20 15967379 15967379 G A MACROD2 Silent p.E331E 0.24 TCGA-EE-A29D-06 20 1616239 1616239 G A SIRPG Missense_Mutation p.P252L 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 20 17623740 17623740 G A RRBP1 Missense_Mutation p.P216S 0.42 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A29D-06 20 19261652 19261652 G A SLC24A3 Silent p.A64A 0.57 TCGA-EE-A29D-06 20 19566125 19566125 C T SLC24A3 Silent p.I183I 0.39 TCGA-EE-A29D-06 20 21376536 21376536 G A NKX2-4 3'UTR 0.24 TCGA-EE-A29D-06 20 21687040 21687040 C T PAX1 Intron 0.25 TCGA-EE-A29D-06 20 21689273 21689273 C T PAX1 Missense_Mutation p.P332S 0.26 tolerated_low_confidence(0.09) benign(0.074) TCGA-EE-A29D-06 20 22563527 22563527 G A FOXA2 Missense_Mutation p.P118L 0.42 deleterious(0.02) probably_damaging(0.949) TCGA-EE-A29D-06 20 2293603 2293603 C T TGM3 Silent p.R200R 0.16 TCGA-EE-A29D-06 20 23029960 23029960 G A THBD Missense_Mutation p.T61I 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 20 23065889 23065889 C T CD93 Missense_Mutation p.G314E 0.18 tolerated(1) benign(0.001) TCGA-EE-A29D-06 20 23066251 23066251 C T CD93 Silent p.L193L 0.16 TCGA-EE-A29D-06 20 23420929 23420929 C T CSTL1 Missense_Mutation p.P9S 0.48 tolerated(0.32) benign(0.007) TCGA-EE-A29D-06 20 23432486 23432486 C T CST11 Silent p.T100T 0.27 TCGA-EE-A29D-06 20 23476598 23476598 G A CST8 3'UTR 0.20 TCGA-EE-A29D-06 20 23584153 23584153 C T CST9 Silent p.G158G 0.56 TCGA-EE-A29D-06 20 24524174 24524174 C T SYNDIG1 Silent p.S147S 0.51 TCGA-EE-A29D-06 20 2474630 2474630 T A ZNF343 5'UTR 0.62 TCGA-EE-A29D-06 20 25188027 25188027 C T ENTPD6 Missense_Mutation p.P124S 0.28 tolerated(0.32) benign(0.034) TCGA-EE-A29D-06 20 25604599 25604599 G A NANP 5'UTR 0.66 TCGA-EE-A29D-06 20 2594061 2594061 C T TMC2 Intron 0.54 TCGA-EE-A29D-06 20 2597926 2597926 C T TMC2 Missense_Mutation p.L717F 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A29D-06 20 2776459 2776459 G A CPXM1 Silent p.L502L 0.22 TCGA-EE-A29D-06 20 30232737 30232737 C T COX4I2 3'UTR 0.21 TCGA-EE-A29D-06 20 30822488 30822488 C T POFUT1 3'UTR 0.32 TCGA-EE-A29D-06 20 31024690 31024690 C T ASXL1 Missense_Mutation p.P1392L 0.45 deleterious(0) benign(0.282) TCGA-EE-A29D-06 20 31395680 31395680 C T DNMT3B Missense_Mutation p.P845S 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 20 32265097 32265097 C T E2F1 Missense_Mutation p.D294N 0.18 deleterious(0) possibly_damaging(0.651) TCGA-EE-A29D-06 20 33222506 33222506 G A PIGU Missense_Mutation p.P148S 0.30 deleterious(0) possibly_damaging(0.741) TCGA-EE-A29D-06 20 33577937 33577937 G A MYH7B Missense_Mutation p.G672S 0.19 benign(0.008) TCGA-EE-A29D-06 20 33862257 33862257 G A MMP24 Missense_Mutation p.D595N 0.23 tolerated(0.42) probably_damaging(0.985) TCGA-EE-A29D-06 20 33999785 33999785 C T UQCC1 5'UTR 0.44 TCGA-EE-A29D-06 20 33999786 33999786 C T UQCC1 5'UTR 0.43 TCGA-EE-A29D-06 20 34025151 34025151 C T GDF5 Silent p.K186K 0.26 TCGA-EE-A29D-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.47 TCGA-EE-A29D-06 20 35064744 35064744 A G DLGAP4 Missense_Mutation p.N411S 0.17 tolerated(0.53) benign(0.006) TCGA-EE-A29D-06 20 35128791 35128791 C T DLGAP4 Silent p.S760S 0.43 TCGA-EE-A29D-06 20 3529819 3529819 C T ATRN Missense_Mutation p.P316S 0.46 tolerated(0.1) benign(0.147) TCGA-EE-A29D-06 20 35504603 35504603 C T TLDC2 Missense_Mutation p.T9I 0.25 tolerated(0.1) possibly_damaging(0.779) TCGA-EE-A29D-06 20 35731208 35731208 G A MROH8 Missense_Mutation p.P1031L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 20 35776243 35776243 C T MROH8 Missense_Mutation p.E409K 0.19 tolerated(0.9) benign(0.004) TCGA-EE-A29D-06 20 35854136 35854136 C T RPN2 Silent p.S410S 0.37 TCGA-EE-A29D-06 20 3677342 3677342 G A SIGLEC1 Silent p.S858S 0.26 TCGA-EE-A29D-06 20 37547329 37547329 G A PPP1R16B 3'UTR 0.38 TCGA-EE-A29D-06 20 37570699 37570699 T C FAM83D Missense_Mutation p.L224P 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 20 39729898 39729898 C A TOP1 Silent p.R405R 0.43 TCGA-EE-A29D-06 20 39792092 39792092 C T PLCG1 Silent p.I288I 0.22 TCGA-EE-A29D-06 20 40050714 40050714 G A CHD6 Missense_Mutation p.P1521S 0.22 tolerated(0.18) benign(0.003) TCGA-EE-A29D-06 20 40714396 40714396 C T PTPRT Missense_Mutation p.R1315K 0.54 deleterious(0.01) benign(0.171) TCGA-EE-A29D-06 20 40727061 40727061 C T PTPRT Silent p.Q1282Q 0.18 TCGA-EE-A29D-06 20 40730916 40730916 G A PTPRT Missense_Mutation p.R1188C 0.12 deleterious(0) probably_damaging(0.925) TCGA-EE-A29D-06 20 40739032 40739032 G A PTPRT Silent p.F1065F 0.14 TCGA-EE-A29D-06 20 40877386 40877386 G A PTPRT Silent p.I751I 0.23 TCGA-EE-A29D-06 20 41306627 41306627 G A PTPRT Silent p.N344N 0.19 TCGA-EE-A29D-06 20 42143764 42143764 C T L3MBTL1 Silent p.S184S 0.17 TCGA-EE-A29D-06 20 42168820 42168820 C T L3MBTL1 Missense_Mutation p.L713F 0.47 tolerated(0.15) benign(0.041) TCGA-EE-A29D-06 20 42194897 42194897 C T SGK2 5'UTR 0.27 TCGA-EE-A29D-06 20 42602052 42602052 G A TOX2 Missense_Mutation p.E49K 0.44 tolerated(0.37) benign(0.085) TCGA-EE-A29D-06 20 42694575 42694575 C T TOX2 Missense_Mutation p.S395F 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-EE-A29D-06 20 42694576 42694576 C T TOX2 Silent p.S395S 0.36 TCGA-EE-A29D-06 20 42697295 42697295 T A TOX2 Missense_Mutation p.L497H 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 20 42744370 42744370 C T JPH2 Missense_Mutation p.G649R 0.43 tolerated(0.49) benign(0.248) TCGA-EE-A29D-06 20 43057118 43057118 G A HNF4A Missense_Mutation p.G425R 0.19 tolerated_low_confidence(0.47) benign(0.009) TCGA-EE-A29D-06 20 43384726 43384726 G A RIMS4 3'UTR 0.21 TCGA-EE-A29D-06 20 43836332 43836332 G A SEMG1 Missense_Mutation p.G132R 0.41 deleterious(0.04) probably_damaging(1) TCGA-EE-A29D-06 20 43933079 43933079 G A MATN4 Silent p.I144I 0.21 TCGA-EE-A29D-06 20 43943151 43943151 A C RBPJL Silent p.P322P 0.22 TCGA-EE-A29D-06 20 43959098 43959098 G A SDC4 Missense_Mutation p.P118L 0.50 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A29D-06 20 44004285 44004285 A G TP53TG5 Intron 0.33 TCGA-EE-A29D-06 20 44163098 44163098 C T WFDC6 3'UTR 0.19 TCGA-EE-A29D-06 20 44163121 44163121 C T WFDC6 Silent p.K82K 0.27 TCGA-EE-A29D-06 20 44506773 44506773 A G ZSWIM3 Missense_Mutation p.M526V 0.36 tolerated(1) benign(0) TCGA-EE-A29D-06 20 44511960 44511960 C T ZSWIM1 Silent p.H243H 0.28 TCGA-EE-A29D-06 20 44511961 44511961 C T ZSWIM1 Missense_Mutation p.R244C 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29D-06 20 45004421 45004421 G A ELMO2 Silent p.I272I 0.18 TCGA-EE-A29D-06 20 45130973 45130973 G A ZNF334 Silent p.A335A 0.16 TCGA-EE-A29D-06 20 45354767 45354767 G A SLC2A10 Silent p.R364R 0.39 TCGA-EE-A29D-06 20 45808448 45808448 T C EYA2 Silent p.L401L 0.20 TCGA-EE-A29D-06 20 46268361 46268361 C T NCOA3 Silent p.S916S 0.23 TCGA-EE-A29D-06 20 4705644 4705644 G A PRND Silent p.L149L 0.51 TCGA-EE-A29D-06 20 48522672 48522672 C T SPATA2 Silent p.R349R 0.17 TCGA-EE-A29D-06 20 48741554 48741554 G A TMEM189 Intron 0.55 TCGA-EE-A29D-06 20 49366359 49366359 C T PARD6B Silent p.L151L 0.57 TCGA-EE-A29D-06 20 49458422 49458422 C T BCAS4 Silent p.L158L 0.07 TCGA-EE-A29D-06 20 49575052 49575052 G A DPM1 Silent p.S3S 0.10 TCGA-EE-A29D-06 20 51870721 51870721 G C TSHZ2 Missense_Mutation p.D242H 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 20 51872519 51872519 G A TSHZ2 Missense_Mutation p.R841K 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29D-06 20 52591931 52591931 C T BCAS1 Silent p.E393E 0.59 TCGA-EE-A29D-06 20 5283061 5283061 C T PROKR2 Silent p.T260T 0.51 TCGA-EE-A29D-06 20 54824049 54824049 C T MC3R Silent p.I50I 0.64 TCGA-EE-A29D-06 20 55027196 55027196 C T CASS4 Missense_Mutation p.P322S 0.33 tolerated(0.29) benign(0.01) TCGA-EE-A29D-06 20 55028054 55028054 T A CASS4 Missense_Mutation p.C608S 0.12 tolerated(0.27) benign(0.216) TCGA-EE-A29D-06 20 55099849 55099849 C T FAM209A 5'UTR 0.21 TCGA-EE-A29D-06 20 55099850 55099850 C T FAM209A 5'UTR 0.22 TCGA-EE-A29D-06 20 55777658 55777658 G A BMP7 Silent p.L211L 0.16 TCGA-EE-A29D-06 20 55948608 55948608 T C RAE1 Silent p.V240V 0.16 TCGA-EE-A29D-06 20 56099122 56099122 A C CTCFL Missense_Mutation p.L47W 0.24 deleterious(0.04) possibly_damaging(0.784) TCGA-EE-A29D-06 20 56140624 56140624 G A PCK1 Missense_Mutation p.D545N 0.24 tolerated(0.48) benign(0.004) TCGA-EE-A29D-06 20 56227472 56227472 G A PMEPA1 Silent p.L167L 0.13 TCGA-EE-A29D-06 20 57245658 57245658 G A STX16 Missense_Mutation p.R216Q 0.24 tolerated(0.11) benign(0.001) TCGA-EE-A29D-06 20 57251387 57251387 C T STX16 3'UTR 0.30 TCGA-EE-A29D-06 20 57415733 57415733 G A RP4-806M20.3 5'Flank 0.23 TCGA-EE-A29D-06 20 57415882 57415882 C T RP4-806M20.3 5'Flank 0.08 TCGA-EE-A29D-06 20 57767077 57767077 C T ZNF831 Missense_Mutation p.R335W 0.20 tolerated(0.06) benign(0.052) TCGA-EE-A29D-06 20 57769065 57769065 C T ZNF831 Silent p.S997S 0.34 TCGA-EE-A29D-06 20 57829230 57829230 C T ZNF831 Missense_Mutation p.S1489F 0.15 deleterious(0) possibly_damaging(0.888) TCGA-EE-A29D-06 20 58322815 58322815 C T PHACTR3 Silent p.L95L 0.26 TCGA-EE-A29D-06 20 58450426 58450426 C T SYCP2 Nonsense_Mutation p.W1083* 0.13 TCGA-EE-A29D-06 20 58571079 58571079 C T CDH26 Missense_Mutation p.P620S 0.15 tolerated(0.07) benign(0.112) TCGA-EE-A29D-06 20 58574710 58574710 G A CDH26 Missense_Mutation p.G697R 0.14 deleterious(0.04) probably_damaging(0.948) TCGA-EE-A29D-06 20 58644994 58644994 C T C20orf197 5'UTR 0.17 TCGA-EE-A29D-06 20 58883535 58883535 C T MIR646 RNA 0.16 TCGA-EE-A29D-06 20 5903689 5903689 C T CHGB Missense_Mutation p.P300L 0.40 tolerated(0.13) benign(0.152) TCGA-EE-A29D-06 20 5904101 5904101 G A CHGB Silent p.E437E 0.15 TCGA-EE-A29D-06 20 60448873 60448873 C T CDH4 Missense_Mutation p.P323S 0.56 deleterious(0.01) possibly_damaging(0.846) TCGA-EE-A29D-06 20 60485528 60485528 C T CDH4 Silent p.L413L 0.19 TCGA-EE-A29D-06 20 60503447 60503447 C T CDH4 Silent p.A657A 0.23 TCGA-EE-A29D-06 20 6060173 6060173 C T FERMT1 Silent p.L590L 0.30 TCGA-EE-A29D-06 20 6077561 6077561 C T FERMT1 Silent p.A359A 0.19 TCGA-EE-A29D-06 20 6078200 6078200 C T FERMT1 Missense_Mutation p.E310K 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 20 60847299 60847299 C T OSBPL2 Missense_Mutation p.P126L 0.16 deleterious(0) benign(0.141) TCGA-EE-A29D-06 20 60881169 60881169 C T ADRM1 Intron 0.17 TCGA-EE-A29D-06 20 60886128 60886128 G A LAMA5 Missense_Mutation p.L3371F 0.23 possibly_damaging(0.805) TCGA-EE-A29D-06 20 61143649 61143649 C T C20orf166 5'Flank 0.10 TCGA-EE-A29D-06 20 61468541 61468541 C T COL9A3 Silent p.S570S 0.12 TCGA-EE-A29D-06 20 61511758 61511758 C T DIDO1 Silent p.G1850G 0.47 TCGA-EE-A29D-06 20 61511759 61511759 C T DIDO1 Missense_Mutation p.G1850E 0.47 probably_damaging(0.997) TCGA-EE-A29D-06 20 61512325 61512325 G A DIDO1 Silent p.P1661P 0.12 TCGA-EE-A29D-06 20 61513160 61513160 C T DIDO1 Missense_Mutation p.R1383K 0.19 probably_damaging(0.99) TCGA-EE-A29D-06 20 61542779 61542779 C T DIDO1 Silent p.R62R 0.13 TCGA-EE-A29D-06 20 61542780 61542780 C T DIDO1 Missense_Mutation p.R62Q 0.13 probably_damaging(0.997) TCGA-EE-A29D-06 20 61835086 61835086 G A YTHDF1 Missense_Mutation p.S69F 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A29D-06 20 61835093 61835093 G A YTHDF1 Missense_Mutation p.P67S 0.31 tolerated(0.27) benign(0.215) TCGA-EE-A29D-06 20 61944500 61944500 T C COL20A1 Missense_Mutation p.V703A 0.35 deleterious(0.01) benign(0.411) TCGA-EE-A29D-06 20 61946784 61946784 C T COL20A1 Silent p.S839S 0.25 TCGA-EE-A29D-06 20 61952421 61952421 C T COL20A1 Silent p.T1070T 0.29 TCGA-EE-A29D-06 20 61952422 61952422 C T COL20A1 Missense_Mutation p.P1071S 0.31 deleterious(0.02) probably_damaging(0.938) TCGA-EE-A29D-06 20 61982185 61982185 T C CHRNA4 Missense_Mutation p.N193S 0.15 tolerated(0.43) benign(0.003) TCGA-EE-A29D-06 20 62126156 62126156 A C EEF1A2 Splice_Site p.X207_splice 0.12 TCGA-EE-A29D-06 20 62161532 62161532 G A PTK6 Missense_Mutation p.P356L 0.09 deleterious(0) probably_damaging(0.987) TCGA-EE-A29D-06 20 62161533 62161533 G A PTK6 Missense_Mutation p.P356S 0.09 deleterious(0.02) possibly_damaging(0.819) TCGA-EE-A29D-06 20 62275112 62275112 C T STMN3 Silent p.R96R 0.42 TCGA-EE-A29D-06 20 62293945 62293945 C T RTEL1 Missense_Mutation p.P172S 0.56 tolerated(0.07) probably_damaging(0.919) TCGA-EE-A29D-06 20 62293946 62293946 C T RTEL1 Missense_Mutation p.P172L 0.55 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 20 62367163 62367163 G A ZGPAT Silent p.E496E 0.10 TCGA-EE-A29D-06 20 62378480 62378480 C T ZBTB46 Missense_Mutation p.E525K 0.11 deleterious(0.01) benign(0.345) TCGA-EE-A29D-06 20 62838965 62838965 C T MYT1 Missense_Mutation p.S139F 0.19 possibly_damaging(0.547) TCGA-EE-A29D-06 20 62839557 62839557 C T MYT1 Silent p.P336P 0.12 TCGA-EE-A29D-06 20 62851143 62851143 C T MYT1 Silent p.F683F 0.18 TCGA-EE-A29D-06 20 77177 77177 G A DEFB125 3'Flank 0.45 TCGA-EE-A29D-06 20 8608938 8608938 C A PLCB1 Intron 0.49 TCGA-EE-A29D-06 20 8782719 8782719 C T PLCB1 Intron 0.31 TCGA-EE-A29D-06 20 8862399 8862399 C T PLCB1 Missense_Mutation p.S1185F 0.23 tolerated(0.12) benign(0.168) TCGA-EE-A29D-06 20 9434098 9434098 G A PLCB4 Missense_Mutation p.M983I 0.46 tolerated(0.73) benign(0) TCGA-EE-A29D-06 20 9438107 9438107 C T PLCB4 Nonsense_Mutation p.Q1003* 0.43 TCGA-EE-A29D-06 20 9510454 9510454 A G LAMP5 Missense_Mutation p.K277R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 20 9520044 9520044 C T PAK7 3'UTR 0.40 TCGA-EE-A29D-06 20 9538327 9538327 G A PAK7 Silent p.S557S 0.42 TCGA-EE-A29D-06 21 10862907 10862907 G A IGHV1OR21-1 Missense_Mutation p.G68E 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A29D-06 21 10920104 10920104 C T TPTE Missense_Mutation p.G384R 0.21 deleterious(0) possibly_damaging(0.867) TCGA-EE-A29D-06 21 10942740 10942740 C T TPTE Missense_Mutation p.G234E 0.06 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A29D-06 21 10944671 10944671 G A TPTE Missense_Mutation p.P188L 0.06 deleterious(0) probably_damaging(0.975) TCGA-EE-A29D-06 21 10944672 10944672 G A TPTE Missense_Mutation p.P188S 0.06 deleterious(0.04) possibly_damaging(0.585) TCGA-EE-A29D-06 21 10951333 10951333 G A TPTE Missense_Mutation p.R127C 0.12 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A29D-06 21 10973731 10973731 C T TPTE Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(1) benign(0) TCGA-EE-A29D-06 21 11039148 11039148 C T BAGE2 RNA 0.14 TCGA-EE-A29D-06 21 11047544 11047544 C T BAGE2 RNA 0.04 TCGA-EE-A29D-06 21 11058254 11058254 G A BAGE2 RNA 0.07 TCGA-EE-A29D-06 21 15537625 15537625 G A LIPI Missense_Mutation p.P295S 0.18 deleterious(0.02) possibly_damaging(0.586) TCGA-EE-A29D-06 21 15753598 15753598 C T HSPA13 Missense_Mutation p.D98N 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 21 15873009 15873009 C T SAMSN1 Nonsense_Mutation p.W271* 0.20 TCGA-EE-A29D-06 21 15893519 15893519 G A SAMSN1 Silent p.F95F 0.17 TCGA-EE-A29D-06 21 19629035 19629035 G A CHODL Missense_Mutation p.G97S 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 21 19726083 19726083 G A TMPRSS15 Silent p.G326G 0.43 TCGA-EE-A29D-06 21 27071148 27071148 G A JAM2 Missense_Mutation p.S185N 0.23 tolerated(0.43) benign(0.008) TCGA-EE-A29D-06 21 27394171 27394171 C T APP Missense_Mutation p.E284K 0.47 tolerated(0.35) unknown(0) TCGA-EE-A29D-06 21 31691549 31691549 G A KRTAP26-1 3'UTR 0.33 TCGA-EE-A29D-06 21 31869245 31869245 G A KRTAP19-4 Silent p.L62L 0.27 TCGA-EE-A29D-06 21 32554740 32554740 G A TIAM1 Missense_Mutation p.P962L 0.43 tolerated(0.15) benign(0) TCGA-EE-A29D-06 21 32638597 32638597 G A TIAM1 Missense_Mutation p.S231F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 21 33331204 33331204 G A HUNK Missense_Mutation p.E266K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29D-06 21 34117202 34117202 G A PAXBP1 Silent p.D697D 0.37 TCGA-EE-A29D-06 21 34876354 34876354 A G GART 3'UTR 0.25 TCGA-EE-A29D-06 21 34922706 34922706 C T SON Missense_Mutation p.S390F 0.29 possibly_damaging(0.485) TCGA-EE-A29D-06 21 35821767 35821767 A G KCNE1 Missense_Mutation p.F56L 0.39 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A29D-06 21 37581099 37581099 C T DOPEY2 Missense_Mutation p.P193L 0.24 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 21 37603281 37603281 G A DOPEY2 Silent p.E733E 0.26 TCGA-EE-A29D-06 21 38302620 38302620 G A HLCS Silent p.T370T 0.43 TCGA-EE-A29D-06 21 38309472 38309472 C T HLCS Silent p.R91R 0.24 TCGA-EE-A29D-06 21 38538480 38538480 C T TTC3 Missense_Mutation p.P1322S 0.47 deleterious(0.05) possibly_damaging(0.729) TCGA-EE-A29D-06 21 38884892 38884892 C T DYRK1A 3'Flank 0.47 TCGA-EE-A29D-06 21 39672093 39672093 G A KCNJ15 Missense_Mutation p.E304K 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 21 40794774 40794774 T C LCA5L Intron 0.50 TCGA-EE-A29D-06 21 40795021 40795021 C T LCA5L Missense_Mutation p.D240N 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29D-06 21 41033056 41033056 C T B3GALT5 Silent p.P190P 0.25 TCGA-EE-A29D-06 21 41300978 41300978 T G PCP4 Missense_Mutation p.V44G 0.46 deleterious(0) probably_damaging(0.958) TCGA-EE-A29D-06 21 41385008 41385008 G A DSCAM Missense_Mutation p.H1998Y 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A29D-06 21 41725530 41725530 C T DSCAM Missense_Mutation p.E266K 0.45 tolerated(0.36) possibly_damaging(0.777) TCGA-EE-A29D-06 21 42080619 42080619 C T DSCAM Missense_Mutation p.G41E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 21 42762578 42762578 G A MX2 Silent p.T273T 0.47 TCGA-EE-A29D-06 21 42804074 42804074 C T MX1 Missense_Mutation p.A26V 0.14 tolerated_low_confidence(0.25) benign(0.005) TCGA-EE-A29D-06 21 42813676 42813676 G A MX1 Missense_Mutation p.G255E 0.20 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 21 42824580 42824580 G A MX1 Silent p.E514E 0.21 TCGA-EE-A29D-06 21 43221841 43221841 C T PRDM15 Silent p.S1361S 0.31 TCGA-EE-A29D-06 21 43339046 43339046 C T C2CD2 Silent p.K172K 0.29 TCGA-EE-A29D-06 21 43504285 43504285 C T UMODL1 Silent p.I137I 0.20 TCGA-EE-A29D-06 21 43508457 43508457 C T UMODL1 Silent p.A219A 0.48 TCGA-EE-A29D-06 21 43539310 43539310 C T UMODL1 Silent p.I983I 0.25 TCGA-EE-A29D-06 21 43543182 43543182 C T UMODL1 Silent p.S1151S 0.17 TCGA-EE-A29D-06 21 43547329 43547329 C T UMODL1 Silent p.I1297I 0.15 TCGA-EE-A29D-06 21 43704778 43704778 C T ABCG1 Silent p.F281F 0.18 TCGA-EE-A29D-06 21 43864744 43864744 C T UBASH3A Silent p.L613L 0.52 TCGA-EE-A29D-06 21 44000508 44000508 C T SLC37A1 3'UTR 0.18 TCGA-EE-A29D-06 21 44837539 44837539 G A SIK1 Silent p.A620A 0.26 TCGA-EE-A29D-06 21 45518270 45518270 C T TRAPPC10 Silent p.P1067P 0.46 TCGA-EE-A29D-06 21 45518271 45518271 C T TRAPPC10 Missense_Mutation p.P1068S 0.47 tolerated(0.36) possibly_damaging(0.895) TCGA-EE-A29D-06 21 45670779 45670779 C T DNMT3L Missense_Mutation p.G275S 0.21 tolerated(0.17) benign(0.014) TCGA-EE-A29D-06 21 45773598 45773598 C T TRPM2 Silent p.A5A 0.78 TCGA-EE-A29D-06 21 45786747 45786747 G A TRPM2 Silent p.K178K 0.30 TCGA-EE-A29D-06 21 45833925 45833925 C T TRPM2 Silent p.I1038I 0.42 TCGA-EE-A29D-06 21 45861608 45861608 C T TRPM2 Nonsense_Mutation p.R1474* 0.33 TCGA-EE-A29D-06 21 45876489 45876489 G A LRRC3 5'UTR 0.15 TCGA-EE-A29D-06 21 45959630 45959630 G A KRTAP10-1 Missense_Mutation p.S135F 0.16 deleterious(0.01) unknown(0) TCGA-EE-A29D-06 21 45970796 45970796 G A KRTAP10-2 Silent p.C182C 0.19 TCGA-EE-A29D-06 21 45987722 45987722 G A TSPEAR Missense_Mutation p.P84S 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 21 46021048 46021048 C T KRTAP10-7 Missense_Mutation p.S176L 0.12 tolerated(0.44) unknown(0) TCGA-EE-A29D-06 21 47360066 47360066 G A PCBP3 Silent p.T344T 0.23 TCGA-EE-A29D-06 21 47410319 47410319 G A COL6A1 Missense_Mutation p.G329R 0.48 deleterious(0) unknown(0) TCGA-EE-A29D-06 21 47423852 47423852 C T COL6A1 Silent p.F1004F 0.21 TCGA-EE-A29D-06 21 47549147 47549147 C T COL6A2 Intron 0.45 TCGA-EE-A29D-06 21 47549148 47549148 C T COL6A2 Intron 0.45 TCGA-EE-A29D-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.07 TCGA-EE-A29D-06 22 16287388 16287388 C T POTEH Missense_Mutation p.M166I 0.11 tolerated(0.06) benign(0.002) TCGA-EE-A29D-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.44 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A29D-06 22 17983972 17983972 C T CECR2 Missense_Mutation p.S224F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 22 18066229 18066229 G A SLC25A18 Missense_Mutation p.G113E 0.05 deleterious(0.02) benign(0.358) TCGA-EE-A29D-06 22 18301668 18301668 G A MICAL3 Silent p.P1253P 0.19 TCGA-EE-A29D-06 22 18566338 18566338 G A PEX26 Silent p.L169L 0.22 TCGA-EE-A29D-06 22 18846126 18846126 G A BCRP7 RNA 0.35 TCGA-EE-A29D-06 22 19026290 19026290 G A DGCR2 3'UTR 0.11 TCGA-EE-A29D-06 22 19385519 19385519 G A HIRA Silent p.F163F 0.25 TCGA-EE-A29D-06 22 19466733 19466733 G A UFD1L 5'UTR 0.33 TCGA-EE-A29D-06 22 21107308 21107308 G A PI4KA Missense_Mutation p.T957I 0.09 tolerated(0.16) possibly_damaging(0.714) TCGA-EE-A29D-06 22 21363575 21363575 C T AC002472.1 5'Flank 0.09 TCGA-EE-A29D-06 22 22020299 22020299 G A PPIL2 5'UTR 0.27 TCGA-EE-A29D-06 22 22277321 22277321 T A PPM1F 3'UTR 0.57 TCGA-EE-A29D-06 22 23404098 23404098 C T RTDR1 Missense_Mutation p.V227M 0.33 deleterious(0.02) benign(0.438) TCGA-EE-A29D-06 22 23482613 23482613 C T RTDR1 5'UTR 0.44 TCGA-EE-A29D-06 22 23498191 23498191 C T RAB36 Silent p.I188I 0.45 TCGA-EE-A29D-06 22 23523165 23523165 C T BCR Silent p.G6G 0.38 TCGA-EE-A29D-06 22 23523166 23523166 T C BCR Missense_Mutation p.F7L 0.42 deleterious_low_confidence(0) benign(0.418) TCGA-EE-A29D-06 22 23596140 23596140 C T BCR Silent p.V478V 0.21 TCGA-EE-A29D-06 22 24579086 24579086 G A SUSD2 Silent p.P46P 0.15 TCGA-EE-A29D-06 22 25145419 25145419 G A PIWIL3 Missense_Mutation p.P429L 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 22 25152461 25152461 C T PIWIL3 Silent p.E189E 0.35 TCGA-EE-A29D-06 22 25331387 25331387 C T TMEM211 Nonsense_Mutation p.W101* 0.40 TCGA-EE-A29D-06 22 25334156 25334156 C T TMEM211 Silent p.R29R 0.26 TCGA-EE-A29D-06 22 25603033 25603033 C T CRYBB3 Missense_Mutation p.P164S 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 22 26176129 26176129 C T MYO18B Silent p.F725F 0.71 TCGA-EE-A29D-06 22 26224745 26224745 C T MYO18B Missense_Mutation p.S930F 0.25 deleterious(0) possibly_damaging(0.845) TCGA-EE-A29D-06 22 26348357 26348357 G A MYO18B Missense_Mutation p.E1980K 0.37 deleterious(0) probably_damaging(0.92) TCGA-EE-A29D-06 22 26423531 26423531 C T MYO18B Missense_Mutation p.P2531S 0.27 tolerated(0.09) possibly_damaging(0.502) TCGA-EE-A29D-06 22 26692917 26692917 C T SEZ6L Silent p.L345L 0.26 TCGA-EE-A29D-06 22 26709787 26709787 C T SEZ6L Missense_Mutation p.P645L 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A29D-06 22 26736439 26736439 G A SEZ6L Missense_Mutation p.D685N 0.65 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 22 26839198 26839198 G A ASPHD2 3'UTR 0.38 TCGA-EE-A29D-06 22 26875323 26875323 T C HPS4 Splice_Site p.X14_splice 0.35 TCGA-EE-A29D-06 22 26937305 26937305 C T TPST2 Missense_Mutation p.E98K 0.36 tolerated(0.07) possibly_damaging(0.589) TCGA-EE-A29D-06 22 28195179 28195179 C T MN1 Missense_Mutation p.M451I 0.53 benign(0.055) TCGA-EE-A29D-06 22 29454859 29454859 C T C22orf31 Nonsense_Mutation p.W248* 0.26 TCGA-EE-A29D-06 22 29454860 29454860 C T C22orf31 Nonsense_Mutation p.W248* 0.26 TCGA-EE-A29D-06 22 29656481 29656481 C T RHBDD3 Missense_Mutation p.A273T 0.50 tolerated(0.44) benign(0.021) TCGA-EE-A29D-06 22 29664206 29664206 C T EWSR1 5'Flank 0.37 TCGA-EE-A29D-06 22 31532914 31532914 G A PLA2G3 Silent p.F393F 0.33 TCGA-EE-A29D-06 22 31655934 31655934 C T LIMK2 Missense_Mutation p.S120F 0.29 tolerated(0.09) possibly_damaging(0.896) TCGA-EE-A29D-06 22 32275641 32275641 C T DEPDC5 Silent p.L1303L 0.29 TCGA-EE-A29D-06 22 33673202 33673202 G A LARGE Silent p.F639F 0.12 TCGA-EE-A29D-06 22 34046486 34046486 G A LARGE Missense_Mutation p.S92F 0.43 deleterious_low_confidence(0.05) benign(0.014) TCGA-EE-A29D-06 22 36691047 36691047 G A MYH9 Silent p.I1187I 0.31 TCGA-EE-A29D-06 22 37268389 37268389 A G NCF4 Silent p.G183G 0.30 TCGA-EE-A29D-06 22 37420837 37420837 C T MPST Missense_Mutation p.P214L 0.62 tolerated(0.06) benign(0.273) TCGA-EE-A29D-06 22 37769097 37769097 G A ELFN2 3'UTR 0.59 TCGA-EE-A29D-06 22 38049839 38049839 C T SH3BP1 Missense_Mutation p.P551L 0.37 tolerated(0.18) benign(0.006) TCGA-EE-A29D-06 22 38121819 38121819 C T TRIOBP Missense_Mutation p.P1086S 0.60 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29D-06 22 38243682 38243682 G A ANKRD54 5'Flank 0.36 TCGA-EE-A29D-06 22 39417433 39417433 T C APOBEC3D 5'UTR 0.24 TCGA-EE-A29D-06 22 39772134 39772134 C T SYNGR1 Missense_Mutation p.P139S 0.18 tolerated(0.07) possibly_damaging(0.898) TCGA-EE-A29D-06 22 39772135 39772135 C T SYNGR1 Missense_Mutation p.P139L 0.18 tolerated(0.1) benign(0.118) TCGA-EE-A29D-06 22 39812855 39812855 G A TAB1 Silent p.K128K 0.30 TCGA-EE-A29D-06 22 40073416 40073416 G A CACNA1I Missense_Mutation p.G1642E 0.33 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 22 41257813 41257813 C T DNAJB7 Silent p.R62R 0.23 TCGA-EE-A29D-06 22 41573875 41573875 C T EP300 Missense_Mutation p.L2054F 0.28 probably_damaging(0.992) TCGA-EE-A29D-06 22 42150007 42150007 C T MEI1 Silent p.N636N 0.32 TCGA-EE-A29D-06 22 42267008 42267008 C T SREBF2 Missense_Mutation p.T279I 0.27 deleterious(0) benign(0.197) TCGA-EE-A29D-06 22 42415784 42415784 G A WBP2NL Missense_Mutation p.G97E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 22 42608391 42608391 G A TCF20 Missense_Mutation p.S974F 0.18 benign(0.372) TCGA-EE-A29D-06 22 43619153 43619153 C T SCUBE1 Missense_Mutation p.G426D 0.24 tolerated(0.12) benign(0.029) TCGA-EE-A29D-06 22 44285212 44285212 G A PNPLA5 Silent p.L233L 0.38 TCGA-EE-A29D-06 22 44328958 44328958 G C PNPLA3 Silent p.P229P 0.56 TCGA-EE-A29D-06 22 44328960 44328960 A G PNPLA3 Missense_Mutation p.D230G 0.54 deleterious(0.05) benign(0.051) TCGA-EE-A29D-06 22 44342273 44342273 G A PNPLA3 3'UTR 0.40 TCGA-EE-A29D-06 22 45574414 45574414 T C NUP50 Silent p.S212S 0.20 TCGA-EE-A29D-06 22 46760421 46760421 C T CELSR1 Missense_Mutation p.E2923K 0.32 deleterious(0.02) benign(0.041) TCGA-EE-A29D-06 22 46932242 46932242 C T CELSR1 Missense_Mutation p.E276K 0.39 deleterious(0) possibly_damaging(0.804) TCGA-EE-A29D-06 22 50553640 50553640 G A MOV10L1 Silent p.G408G 0.31 TCGA-EE-A29D-06 22 50599144 50599144 G A MOV10L1 Missense_Mutation p.D1118N 0.39 tolerated(0.1) probably_damaging(0.941) TCGA-EE-A29D-06 22 50717035 50717035 A G PLXNB2 Missense_Mutation p.M1546T 0.50 tolerated(0.34) probably_damaging(0.935) TCGA-EE-A29D-06 22 50724519 50724519 G A PLXNB2 Missense_Mutation p.S629F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 22 50893737 50893737 G A SBF1 Silent p.F1490F 0.59 TCGA-EE-A29D-06 22 50901136 50901136 G A SBF1 Missense_Mutation p.P660L 0.38 deleterious(0.02) benign(0.324) TCGA-EE-A29D-06 22 51063801 51063801 G A ARSA Silent p.S434S 0.28 TCGA-EE-A29D-06 2 100058899 100058899 G A REV1 Missense_Mutation p.P128L 0.56 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29D-06 2 100210308 100210308 G A AFF3 Silent p.P630P 0.25 TCGA-EE-A29D-06 2 102968026 102968026 G A IL1RL1 Missense_Mutation p.R439Q 0.69 tolerated(1) benign(0.019) TCGA-EE-A29D-06 2 105859317 105859317 C T GPR45 Silent p.A334A 0.18 TCGA-EE-A29D-06 2 105883952 105883952 G A TGFBRAP1 Missense_Mutation p.P824L 0.27 deleterious(0) possibly_damaging(0.491) TCGA-EE-A29D-06 2 107040084 107040084 G A RGPD3 Missense_Mutation p.R1447C 0.12 deleterious(0.01) possibly_damaging(0.865) TCGA-EE-A29D-06 2 107041049 107041049 C T RGPD3 Missense_Mutation p.G1125E 0.27 deleterious(0.01) possibly_damaging(0.821) TCGA-EE-A29D-06 2 107423353 107423353 G A ST6GAL2 Silent p.I457I 0.30 TCGA-EE-A29D-06 2 107459508 107459508 G A ST6GAL2 Missense_Mutation p.S309F 0.57 probably_damaging(0.977) TCGA-EE-A29D-06 2 1079242 1079242 C T SNTG2 Silent p.S37S 0.14 TCGA-EE-A29D-06 2 108488514 108488514 G A RGPD4 Missense_Mutation p.E1352K 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 2 108489194 108489194 G A RGPD4 Silent p.L1578L 0.26 TCGA-EE-A29D-06 2 109002725 109002725 C T SULT1C4 Silent p.V231V 0.29 TCGA-EE-A29D-06 2 109092241 109092241 C T GCC2 Nonsense_Mutation p.R999* 0.57 TCGA-EE-A29D-06 2 109104204 109104204 T C GCC2 Missense_Mutation p.V1327A 0.29 deleterious(0) probably_damaging(0.978) TCGA-EE-A29D-06 2 10937289 10937289 G T PDIA6 Silent p.S88S 0.11 TCGA-EE-A29D-06 2 109381019 109381019 C T RANBP2 Silent p.L1342L 0.41 TCGA-EE-A29D-06 2 1093938 1093938 G A SNTG2 Silent p.K89K 0.13 TCGA-EE-A29D-06 2 1093939 1093939 G A SNTG2 Splice_Site p.X89_splice 0.12 TCGA-EE-A29D-06 2 111144837 111144837 G A LINC01106 5'Flank 0.40 TCGA-EE-A29D-06 2 111556267 111556267 C T ACOXL Silent p.V142V 0.58 TCGA-EE-A29D-06 2 111562928 111562928 C T ACOXL Missense_Mutation p.P237S 0.25 tolerated(0.3) benign(0.093) TCGA-EE-A29D-06 2 113147045 113147045 G A RGPD8 Silent p.F1159F 0.13 TCGA-EE-A29D-06 2 11367483 11367483 A T ROCK2 Missense_Mutation p.D255E 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 2 113763639 113763639 C T IL36A Silent p.V33V 0.31 TCGA-EE-A29D-06 2 113763640 113763640 C T IL36A Missense_Mutation p.P34S 0.31 deleterious(0) probably_damaging(0.927) TCGA-EE-A29D-06 2 113764178 113764178 C T IL36A Missense_Mutation p.T43I 0.32 tolerated(0.09) possibly_damaging(0.474) TCGA-EE-A29D-06 2 113832744 113832744 G A IL1F10 Missense_Mutation p.E88K 0.57 deleterious(0.03) benign(0.119) TCGA-EE-A29D-06 2 11389784 11389784 T C ROCK2 Intron 0.11 TCGA-EE-A29D-06 2 11716606 11716606 C T GREB1 Silent p.V194V 0.26 TCGA-EE-A29D-06 2 118753067 118753067 G A CCDC93 Silent p.F158F 0.55 TCGA-EE-A29D-06 2 11905737 11905737 C T LPIN1 Missense_Mutation p.P73S 0.20 deleterious(0) probably_damaging(0.91) TCGA-EE-A29D-06 2 119726773 119726773 C T MARCO Silent p.S45S 0.66 TCGA-EE-A29D-06 2 119726782 119726782 G A MARCO Silent p.V48V 0.22 TCGA-EE-A29D-06 2 120125436 120125436 G A DBI Intron 0.29 TCGA-EE-A29D-06 2 121747145 121747145 G A GLI2 Missense_Mutation p.V1219I 0.29 tolerated_low_confidence(0.5) benign(0.001) TCGA-EE-A29D-06 2 1251210 1251210 C T SNTG2 Missense_Mutation p.P334S 0.69 deleterious(0.01) possibly_damaging(0.721) TCGA-EE-A29D-06 2 128079751 128079751 G A MAP3K2 Missense_Mutation p.H306Y 0.57 tolerated(0.3) benign(0.143) TCGA-EE-A29D-06 2 128262588 128262588 G A IWS1 Silent p.P297P 0.25 TCGA-EE-A29D-06 2 128262908 128262908 G A IWS1 Missense_Mutation p.P191S 0.30 tolerated_low_confidence(0.18) benign(0.002) TCGA-EE-A29D-06 2 128380870 128380870 G A MYO7B Missense_Mutation p.E1221K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 2 128775341 128775341 G A SAP130 Silent p.V113V 0.34 TCGA-EE-A29D-06 2 130878096 130878096 T G POTEF 5'UTR 0.33 TCGA-EE-A29D-06 2 132290316 132290316 C T CCDC74A Missense_Mutation p.R280C 0.49 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 2 133543111 133543111 C T NCKAP5 Missense_Mutation p.G425S 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 2 135095839 135095839 C T MGAT5 Missense_Mutation p.R219C 0.21 deleterious(0) possibly_damaging(0.785) TCGA-EE-A29D-06 2 135738420 135738420 T A MAP3K19 Silent p.A1297A 0.23 TCGA-EE-A29D-06 2 135738474 135738474 G A MAP3K19 Silent p.I1279I 0.24 TCGA-EE-A29D-06 2 135740802 135740802 G A MAP3K19 Intron 0.23 TCGA-EE-A29D-06 2 135745462 135745462 C T MAP3K19 Missense_Mutation p.G327E 0.68 tolerated(0.19) benign(0.086) TCGA-EE-A29D-06 2 136567205 136567205 C T LCT Silent p.R904R 0.28 TCGA-EE-A29D-06 2 136567238 136567238 G A LCT Silent p.F893F 0.29 TCGA-EE-A29D-06 2 136570120 136570120 G A LCT Missense_Mutation p.T705I 0.32 tolerated(0.18) benign(0.288) TCGA-EE-A29D-06 2 137852460 137852460 C T THSD7B Missense_Mutation p.S323F 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A29D-06 2 137872754 137872754 G A THSD7B Silent p.Q420Q 0.20 TCGA-EE-A29D-06 2 137988663 137988663 G A THSD7B Silent p.R591R 0.67 TCGA-EE-A29D-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.62 deleterious(0) unknown(0) TCGA-EE-A29D-06 2 139307762 139307762 C T SPOPL 5'UTR 0.65 TCGA-EE-A29D-06 2 139428493 139428493 C T NXPH2 Silent p.%3D 0.23 TCGA-EE-A29D-06 2 141055433 141055433 C T LRP1B Missense_Mutation p.G4304E 0.27 probably_damaging(0.931) TCGA-EE-A29D-06 2 141072564 141072564 C T LRP1B Missense_Mutation p.E4249K 0.33 possibly_damaging(0.621) TCGA-EE-A29D-06 2 141079576 141079576 C T LRP1B Missense_Mutation p.G4199E 0.21 probably_damaging(0.931) TCGA-EE-A29D-06 2 141130635 141130635 C T LRP1B Nonsense_Mutation p.W3570* 0.30 TCGA-EE-A29D-06 2 141598489 141598489 C T LRP1B Silent p.R1704R 0.12 TCGA-EE-A29D-06 2 141773305 141773305 T A LRP1B Missense_Mutation p.D717V 0.58 possibly_damaging(0.804) TCGA-EE-A29D-06 2 141986872 141986872 C T LRP1B Missense_Mutation p.E244K 0.32 benign(0.292) TCGA-EE-A29D-06 2 142012121 142012121 C T LRP1B Missense_Mutation p.E145K 0.62 benign(0.305) TCGA-EE-A29D-06 2 14774290 14774290 C T FAM84A Missense_Mutation p.P63S 0.17 tolerated(0.13) probably_damaging(0.992) TCGA-EE-A29D-06 2 1481044 1481044 C T TPO Silent p.L336L 0.10 TCGA-EE-A29D-06 2 1491747 1491747 G A TPO Silent p.R584R 0.48 TCGA-EE-A29D-06 2 149240932 149240932 C T MBD5 Silent p.I924I 0.30 TCGA-EE-A29D-06 2 149864535 149864535 C T KIF5C Missense_Mutation p.S835F 0.17 deleterious(0.02) benign(0.031) TCGA-EE-A29D-06 2 152331601 152331601 T C RIF1 3'UTR 0.68 TCGA-EE-A29D-06 2 152404231 152404231 G A NEB Missense_Mutation p.H6727Y 0.25 probably_damaging(0.978) TCGA-EE-A29D-06 2 152404847 152404847 C T NEB Missense_Mutation p.R6711Q 0.21 possibly_damaging(0.902) TCGA-EE-A29D-06 2 152420431 152420431 C T NEB Missense_Mutation p.G6162E 0.33 benign(0.111) TCGA-EE-A29D-06 2 152471012 152471012 G A NEB Silent p.I3793I 0.25 TCGA-EE-A29D-06 2 153481956 153481956 G A FMNL2 Silent p.V614V 0.23 TCGA-EE-A29D-06 2 1544401 1544401 C T TPO Missense_Mutation p.S885L 0.42 tolerated_low_confidence(0.35) benign(0) TCGA-EE-A29D-06 2 155115612 155115612 G A GALNT13 Missense_Mutation p.M312I 0.26 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A29D-06 2 160676372 160676372 T C LY75-CD302 Missense_Mutation p.R1340G 0.32 deleterious(0) probably_damaging(0.943) TCGA-EE-A29D-06 2 160798372 160798372 G A PLA2R1 Missense_Mutation p.P1437S 0.58 tolerated(0.75) benign(0.007) TCGA-EE-A29D-06 2 160994664 160994664 C T ITGB6 Missense_Mutation p.G385E 0.27 tolerated(1) possibly_damaging(0.776) TCGA-EE-A29D-06 2 160994665 160994665 C T ITGB6 Missense_Mutation p.G385R 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29D-06 2 162661050 162661050 G A SLC4A10 Silent p.K74K 0.70 TCGA-EE-A29D-06 2 162873347 162873347 A G DPP4 Silent p.L500L 0.24 TCGA-EE-A29D-06 2 163256735 163256735 C T KCNH7 Missense_Mutation p.E791K 0.32 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 2 163292019 163292019 C T KCNH7 Missense_Mutation p.G548D 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 2 163292020 163292020 C T KCNH7 Missense_Mutation p.G548S 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 2 163374271 163374271 C T KCNH7 Silent p.K287K 0.29 TCGA-EE-A29D-06 2 163374308 163374308 G A KCNH7 Missense_Mutation p.S275L 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A29D-06 2 163695081 163695081 G A KCNH7 5'UTR 0.38 TCGA-EE-A29D-06 2 1643106 1643106 C T PXDN Silent p.P1347P 0.21 TCGA-EE-A29D-06 2 1652704 1652704 G A PXDN Missense_Mutation p.P950S 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 165551680 165551680 G A COBLL1 Missense_Mutation p.S779F 0.25 tolerated(0.11) benign(0.132) TCGA-EE-A29D-06 2 166201246 166201246 C T SCN2A Missense_Mutation p.S915F 0.29 deleterious(0.03) possibly_damaging(0.459) TCGA-EE-A29D-06 2 166245525 166245525 C T SCN2A Missense_Mutation p.H1737Y 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29D-06 2 166606258 166606258 G A GALNT3 Silent p.I591I 0.35 TCGA-EE-A29D-06 2 166848847 166848847 G A SCN1A Silent p.I1646I 0.25 TCGA-EE-A29D-06 2 166892614 166892614 C T SCN1A Missense_Mutation p.E1125K 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 2 167145070 167145070 G A SCN9A Silent p.I397I 0.37 TCGA-EE-A29D-06 2 167163561 167163561 C T SCN9A Silent p.G94G 0.35 TCGA-EE-A29D-06 2 167163562 167163562 C T SCN9A Missense_Mutation p.G94E 0.35 deleterious(0.03) benign(0.301) TCGA-EE-A29D-06 2 168099166 168099166 G A XIRP2 Missense_Mutation p.E422K 0.34 possibly_damaging(0.904) TCGA-EE-A29D-06 2 168099963 168099963 G A XIRP2 Silent p.G687G 0.38 TCGA-EE-A29D-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.20 probably_damaging(0.999) TCGA-EE-A29D-06 2 168101472 168101472 G A XIRP2 Missense_Mutation p.M1190I 0.14 benign(0.008) TCGA-EE-A29D-06 2 168103908 168103908 G A XIRP2 Silent p.G2002G 0.28 TCGA-EE-A29D-06 2 168108428 168108428 C T XIRP2 Missense_Mutation p.T3509I 0.15 benign(0.35) TCGA-EE-A29D-06 2 169780291 169780291 G A ABCB11 Silent p.T1269T 0.60 TCGA-EE-A29D-06 2 169780292 169780292 G A ABCB11 Missense_Mutation p.T1269I 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 2 169783671 169783671 G A ABCB11 Missense_Mutation p.P1205S 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29D-06 2 169787182 169787182 C T ABCB11 Missense_Mutation p.G1135E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 169825938 169825938 C T ABCB11 Missense_Mutation p.E645K 0.32 tolerated(0.58) benign(0.013) TCGA-EE-A29D-06 2 169828506 169828506 G A ABCB11 Nonsense_Mutation p.Q497* 0.18 TCGA-EE-A29D-06 2 169938249 169938249 G A DHRS9 Missense_Mutation p.G53E 0.34 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 2 170100032 170100032 T C LRP2 Missense_Mutation p.N1144S 0.73 benign(0.071) TCGA-EE-A29D-06 2 170103275 170103275 G A LRP2 Missense_Mutation p.L1044F 0.28 benign(0.167) TCGA-EE-A29D-06 2 170136018 170136018 C A LRP2 Missense_Mutation p.V477F 0.22 possibly_damaging(0.646) TCGA-EE-A29D-06 2 170151129 170151129 G A LRP2 Silent p.S173S 0.27 TCGA-EE-A29D-06 2 170428350 170428350 A T FASTKD1 Missense_Mutation p.S64T 0.28 tolerated(0.28) benign(0.181) TCGA-EE-A29D-06 2 170518913 170518913 C T CCDC173 Silent p.R232R 0.68 TCGA-EE-A29D-06 2 170557699 170557699 C T PHOSPHO2 Missense_Mutation p.P73L 0.38 deleterious(0) probably_damaging(0.975) TCGA-EE-A29D-06 2 171056792 171056792 G A MYO3B Missense_Mutation p.E107K 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 2 173355752 173355752 G C ITGA6 Missense_Mutation p.E894Q 0.60 tolerated(0.29) benign(0.025) TCGA-EE-A29D-06 2 17696571 17696571 G A RAD51AP2 Missense_Mutation p.P1038S 0.17 tolerated(0.35) benign(0.025) TCGA-EE-A29D-06 2 17697617 17697617 G A RAD51AP2 Missense_Mutation p.P689L 0.13 tolerated(0.1) possibly_damaging(0.656) TCGA-EE-A29D-06 2 17698906 17698906 G A RAD51AP2 Silent p.V259V 0.17 TCGA-EE-A29D-06 2 17847771 17847771 C T SMC6 Missense_Mutation p.R1026K 0.79 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 2 178977483 178977483 C T RBM45 Silent p.F70F 0.32 TCGA-EE-A29D-06 2 17898368 17898368 C T SMC6 Missense_Mutation p.E390K 0.35 tolerated(0.13) possibly_damaging(0.678) TCGA-EE-A29D-06 2 179396239 179396239 C T TTN Missense_Mutation p.D35035N 0.53 TCGA-EE-A29D-06 2 179397432 179397432 C T TTN Missense_Mutation p.R34637Q 0.57 TCGA-EE-A29D-06 2 179397749 179397749 C T TTN Silent p.K34531K 0.25 TCGA-EE-A29D-06 2 179404419 179404419 C T TTN Silent p.R32791R 0.68 TCGA-EE-A29D-06 2 179404579 179404579 C T TTN Nonsense_Mutation p.W32738* 0.62 TCGA-EE-A29D-06 2 179404885 179404885 C T TTN Missense_Mutation p.E32670K 0.66 TCGA-EE-A29D-06 2 179407982 179407982 C T TTN Missense_Mutation p.E32240K 0.64 TCGA-EE-A29D-06 2 179413974 179413974 G A TTN Silent p.F30793F 0.53 TCGA-EE-A29D-06 2 179422801 179422801 C T TTN Missense_Mutation p.E29094K 0.29 TCGA-EE-A29D-06 2 179430272 179430272 C T TTN Missense_Mutation p.D26863N 0.28 TCGA-EE-A29D-06 2 179431872 179431872 G A TTN Silent p.T26329T 0.39 TCGA-EE-A29D-06 2 179434655 179434655 G A TTN Missense_Mutation p.P25402S 0.28 TCGA-EE-A29D-06 2 179438979 179438979 G A TTN Silent p.I23960I 0.28 TCGA-EE-A29D-06 2 179441054 179441054 C T TTN Missense_Mutation p.G23269R 0.17 TCGA-EE-A29D-06 2 179453500 179453500 C T TTN Nonsense_Mutation p.W20984* 0.29 TCGA-EE-A29D-06 2 179454532 179454532 G A TTN Silent p.F20640F 0.50 TCGA-EE-A29D-06 2 179454770 179454770 G A TTN Missense_Mutation p.S20561L 0.54 TCGA-EE-A29D-06 2 179456953 179456953 G A TTN Missense_Mutation p.S19893L 0.73 TCGA-EE-A29D-06 2 179474049 179474049 C T TTN Missense_Mutation p.G17330R 0.60 TCGA-EE-A29D-06 2 179474868 179474868 C T TTN Missense_Mutation p.G17129R 0.48 TCGA-EE-A29D-06 2 179478995 179478995 C T TTN Missense_Mutation p.D16377N 0.30 TCGA-EE-A29D-06 2 179484381 179484381 C T TTN Missense_Mutation p.D15555N 0.35 TCGA-EE-A29D-06 2 179495008 179495008 T C TTN Silent p.Q14747Q 0.63 TCGA-EE-A29D-06 2 179504809 179504809 G A TTN Silent p.L13584L 0.24 TCGA-EE-A29D-06 2 179532236 179532236 C T TTN Silent p.K11882K 0.29 TCGA-EE-A29D-06 2 179535837 179535837 C T TTN Missense_Mutation p.R11763Q 0.24 TCGA-EE-A29D-06 2 179542465 179542465 G A TTN Missense_Mutation p.P11392S 0.33 TCGA-EE-A29D-06 2 179542485 179542485 A G TTN Missense_Mutation p.L11385P 0.50 TCGA-EE-A29D-06 2 179566899 179566899 C T TTN Silent p.T10169T 0.41 TCGA-EE-A29D-06 2 179578750 179578750 T C TTN Missense_Mutation p.S8879G 0.36 TCGA-EE-A29D-06 2 179582526 179582526 G A TTN Missense_Mutation p.P8359S 0.30 TCGA-EE-A29D-06 2 179583222 179583222 C T TTN Nonsense_Mutation p.W8204* 0.26 TCGA-EE-A29D-06 2 179584073 179584073 G A TTN Missense_Mutation p.S8015L 0.25 TCGA-EE-A29D-06 2 179587193 179587193 G A TTN Nonsense_Mutation p.R7441* 0.32 TCGA-EE-A29D-06 2 179587274 179587274 C T TTN Splice_Site p.X7414_splice 0.35 TCGA-EE-A29D-06 2 179587617 179587617 C T TTN Missense_Mutation p.G7337R 0.21 TCGA-EE-A29D-06 2 179589021 179589021 C T TTN Silent p.G7027G 0.40 TCGA-EE-A29D-06 2 179594115 179594115 G A TTN Silent p.L6256L 0.26 TCGA-EE-A29D-06 2 179594165 179594165 G A TTN Nonsense_Mutation p.R6240* 0.28 TCGA-EE-A29D-06 2 179604892 179604892 G A TTN Silent p.I4356I 0.62 TCGA-EE-A29D-06 2 179605373 179605373 G A TTN Missense_Mutation p.S4196L 0.28 TCGA-EE-A29D-06 2 179606592 179606592 G A TTN Nonsense_Mutation p.Q3790* 0.56 TCGA-EE-A29D-06 2 179612958 179612958 G A TTN Intron 0.38 TCGA-EE-A29D-06 2 179615326 179615326 G A TTN Intron 0.32 TCGA-EE-A29D-06 2 179636172 179636172 C T TTN Missense_Mutation p.D2628N 0.22 TCGA-EE-A29D-06 2 179640473 179640473 G A TTN Missense_Mutation p.H2040Y 0.61 TCGA-EE-A29D-06 2 179641161 179641161 C T TTN Silent p.R1810R 0.27 TCGA-EE-A29D-06 2 179647313 179647313 T A TTN Missense_Mutation p.E1039D 0.30 TCGA-EE-A29D-06 2 179648797 179648797 C T TTN Silent p.K925K 0.34 TCGA-EE-A29D-06 2 179721055 179721055 C T CCDC141 Missense_Mutation p.E932K 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 2 179733900 179733900 G A CCDC141 Nonsense_Mutation p.Q780* 0.25 TCGA-EE-A29D-06 2 18113776 18113776 C T KCNS3 3'UTR 0.74 TCGA-EE-A29D-06 2 183104926 183104926 C T PDE1A Silent p.R103R 0.24 TCGA-EE-A29D-06 2 183104927 183104927 C T PDE1A Missense_Mutation p.R103Q 0.23 tolerated(0.17) probably_damaging(0.959) TCGA-EE-A29D-06 2 183995214 183995214 A G NUP35 Missense_Mutation p.I94V 0.30 tolerated(0.07) benign(0.08) TCGA-EE-A29D-06 2 184025781 184025781 G A NUP35 Splice_Site p.X302_splice 0.25 TCGA-EE-A29D-06 2 185801717 185801717 C T ZNF804A Missense_Mutation p.L532F 0.29 tolerated(0.13) benign(0.001) TCGA-EE-A29D-06 2 185802161 185802161 G A ZNF804A Missense_Mutation p.E680K 0.18 tolerated(1) benign(0.005) TCGA-EE-A29D-06 2 185802432 185802432 G A ZNF804A Missense_Mutation p.R770Q 0.22 deleterious(0.03) benign(0.003) TCGA-EE-A29D-06 2 185803848 185803848 G A ZNF804A 3'UTR 0.30 TCGA-EE-A29D-06 2 186671030 186671030 G A FSIP2 Missense_Mutation p.R5755K 0.30 benign(0.102) TCGA-EE-A29D-06 2 186672472 186672472 G A FSIP2 Missense_Mutation p.E6236K 0.33 benign(0.236) TCGA-EE-A29D-06 2 18736667 18736667 G A RDH14 Silent p.L267L 0.15 TCGA-EE-A29D-06 2 187455095 187455095 C T ITGAV Silent p.R10R 0.21 TCGA-EE-A29D-06 2 188368424 188368424 G T TFPI Silent p.A24A 0.28 TCGA-EE-A29D-06 2 1893202 1893202 C T MYT1L Missense_Mutation p.M775I 0.12 deleterious(0.02) benign(0.06) TCGA-EE-A29D-06 2 189869012 189869012 G A COL3A1 Silent p.G951G 0.21 TCGA-EE-A29D-06 2 189874904 189874904 G A COL3A1 Missense_Mutation p.G1275E 0.30 unknown(0) TCGA-EE-A29D-06 2 190925138 190925138 C T MSTN Missense_Mutation p.G133R 0.20 tolerated(0.14) benign(0.002) TCGA-EE-A29D-06 2 192701074 192701074 C T SDPR Missense_Mutation p.G285R 0.25 deleterious(0.03) possibly_damaging(0.861) TCGA-EE-A29D-06 2 192818516 192818516 C T TMEFF2 Missense_Mutation p.S306N 0.77 tolerated(1) benign(0.001) TCGA-EE-A29D-06 2 196661399 196661399 C T DNAH7 Missense_Mutation p.M3472I 0.71 tolerated(0.15) benign(0.034) TCGA-EE-A29D-06 2 196673456 196673456 T A DNAH7 Nonsense_Mutation p.R3345* 0.56 TCGA-EE-A29D-06 2 196729521 196729521 G A DNAH7 Silent p.I2286I 0.31 TCGA-EE-A29D-06 2 196729541 196729541 C T DNAH7 Missense_Mutation p.D2280N 0.24 tolerated(0.39) benign(0.003) TCGA-EE-A29D-06 2 196759738 196759738 G A DNAH7 Missense_Mutation p.R1620C 0.41 deleterious(0) probably_damaging(0.981) TCGA-EE-A29D-06 2 196801428 196801428 C T DNAH7 Missense_Mutation p.G1056E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 197673972 197673972 C T C2orf66 Nonsense_Mutation p.W47* 0.29 TCGA-EE-A29D-06 2 201785741 201785741 G A ORC2 Silent p.S423S 0.43 TCGA-EE-A29D-06 2 20194152 20194152 C T MATN3 Missense_Mutation p.R438K 0.16 tolerated(0.27) benign(0.438) TCGA-EE-A29D-06 2 202025520 202025520 G C CFLAR Missense_Mutation p.A387P 0.62 tolerated(0.25) benign(0.012) TCGA-EE-A29D-06 2 202343136 202343136 C T STRADB Silent p.F294F 0.30 TCGA-EE-A29D-06 2 202344248 202344248 C A STRADB Missense_Mutation p.F369L 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 2 202557634 202557634 T C MPP4 Silent p.L66L 0.50 TCGA-EE-A29D-06 2 203242220 203242220 C T BMPR2 Missense_Mutation p.P8L 0.25 tolerated_low_confidence(1) benign(0) TCGA-EE-A29D-06 2 203682187 203682187 C T ICA1L Missense_Mutation p.G213E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 203991366 203991366 C T NBEAL1 Silent p.L995L 0.30 TCGA-EE-A29D-06 2 20403808 20403808 G A SDC1 Silent p.L131L 0.24 TCGA-EE-A29D-06 2 206166306 206166306 G A PARD3B Silent p.T775T 0.23 TCGA-EE-A29D-06 2 206305094 206305094 G A PARD3B Silent p.R852R 0.12 TCGA-EE-A29D-06 2 20647579 20647579 A T RHOB Missense_Mutation p.K118I 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 2 207170116 207170116 C T ZDBF2 Silent p.F288F 0.22 TCGA-EE-A29D-06 2 207171108 207171108 C T ZDBF2 Missense_Mutation p.P619L 0.33 tolerated(0.23) probably_damaging(0.927) TCGA-EE-A29D-06 2 207603191 207603191 C T MDH1B 3'UTR 0.16 TCGA-EE-A29D-06 2 20886691 20886691 G A C2orf43 Missense_Mutation p.S317F 0.78 deleterious(0) benign(0.028) TCGA-EE-A29D-06 2 209188919 209188919 C T PIKFYVE Silent p.T748T 0.34 TCGA-EE-A29D-06 2 210560569 210560569 C T MAP2 Silent p.I1225I 0.10 TCGA-EE-A29D-06 2 210642244 210642244 C T UNC80 Silent p.L187L 0.30 TCGA-EE-A29D-06 2 211155766 211155766 C T MYL1 3'UTR 0.26 TCGA-EE-A29D-06 2 211179661 211179661 C T MYL1 Missense_Mutation p.E36K 0.26 tolerated(0.26) benign(0.037) TCGA-EE-A29D-06 2 21225483 21225483 C T APOB Missense_Mutation p.E4271K 0.72 benign(0) TCGA-EE-A29D-06 2 21225588 21225588 G A APOB Missense_Mutation p.H4236Y 0.73 benign(0.193) TCGA-EE-A29D-06 2 21229859 21229859 G A APOB Missense_Mutation p.S3294L 0.16 probably_damaging(0.973) TCGA-EE-A29D-06 2 21230075 21230075 G A APOB Missense_Mutation p.S3222F 0.40 possibly_damaging(0.709) TCGA-EE-A29D-06 2 21230373 21230373 G A APOB Silent p.L3123L 0.76 TCGA-EE-A29D-06 2 21230953 21230953 C T APOB Nonsense_Mutation p.W2929* 0.17 TCGA-EE-A29D-06 2 21231812 21231812 G A APOB Missense_Mutation p.S2643F 0.17 benign(0.401) TCGA-EE-A29D-06 2 21233506 21233506 T C APOB Silent p.Q2078Q 0.77 TCGA-EE-A29D-06 2 212426674 212426674 T G ERBB4 Missense_Mutation p.N814T 0.24 tolerated(0.12) possibly_damaging(0.628) TCGA-EE-A29D-06 2 21260958 21260958 C T APOB Missense_Mutation p.E137K 0.44 possibly_damaging(0.652) TCGA-EE-A29D-06 2 212812235 212812235 C T ERBB4 Missense_Mutation p.R114Q 0.32 tolerated(0.14) benign(0.262) TCGA-EE-A29D-06 2 213878550 213878550 C T IKZF2 Missense_Mutation p.G274E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 215813426 215813426 A G ABCA12 Missense_Mutation p.V2333A 0.22 deleterious(0.01) benign(0.217) TCGA-EE-A29D-06 2 215818600 215818600 C T ABCA12 Missense_Mutation p.E2209K 0.27 tolerated(0.84) benign(0.094) TCGA-EE-A29D-06 2 215884085 215884085 G T ABCA12 Missense_Mutation p.N544K 0.54 tolerated(0.78) benign(0.002) TCGA-EE-A29D-06 2 215890473 215890473 C T ABCA12 Missense_Mutation p.R404Q 0.31 tolerated(0.73) benign(0.001) TCGA-EE-A29D-06 2 216226319 216226319 G A FN1 Missense_Mutation p.P2465S 0.29 deleterious(0) possibly_damaging(0.492) TCGA-EE-A29D-06 2 218696248 218696248 G A TNS1 Silent p.A976A 0.44 TCGA-EE-A29D-06 2 219204827 219204827 C T PNKD Missense_Mutation p.A143V 0.33 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A29D-06 2 219251363 219251363 C T SLC11A1 Silent p.P133P 0.35 TCGA-EE-A29D-06 2 219873831 219873831 C T CCDC108 Missense_Mutation p.E1538K 0.28 tolerated(0.16) benign(0.124) TCGA-EE-A29D-06 2 219873832 219873832 C T CCDC108 Silent p.Q1537Q 0.28 TCGA-EE-A29D-06 2 219920526 219920526 C T IHH Silent p.E213E 0.21 TCGA-EE-A29D-06 2 220089208 220089208 G A ATG9A Silent p.I295I 0.21 TCGA-EE-A29D-06 2 220285375 220285375 G A DES Silent p.S298S 0.17 TCGA-EE-A29D-06 2 220354280 220354280 G A SPEG Missense_Mutation p.R2847Q 0.21 probably_damaging(0.99) TCGA-EE-A29D-06 2 220413851 220413851 C T TMEM198 Intron 0.36 TCGA-EE-A29D-06 2 220466087 220466087 C T STK11IP Silent p.S75S 0.22 TCGA-EE-A29D-06 2 222347194 222347194 G A EPHA4 Missense_Mutation p.S399F 0.33 tolerated(0.5) benign(0.084) TCGA-EE-A29D-06 2 222347308 222347308 G A EPHA4 Missense_Mutation p.S361F 0.42 tolerated(0.07) possibly_damaging(0.567) TCGA-EE-A29D-06 2 223773638 223773638 G T ACSL3 Nonsense_Mutation p.E50* 0.33 TCGA-EE-A29D-06 2 227924863 227924863 G A COL4A4 Missense_Mutation p.P718L 0.46 possibly_damaging(0.507) TCGA-EE-A29D-06 2 228124588 228124588 C T COL4A3 Missense_Mutation p.P370L 0.36 possibly_damaging(0.626) TCGA-EE-A29D-06 2 228147231 228147231 G A COL4A3 Missense_Mutation p.G880E 0.42 unknown(0) TCGA-EE-A29D-06 2 228770952 228770952 G A DAW1 Silent p.R252R 0.39 TCGA-EE-A29D-06 2 228881455 228881455 C T SPHKAP Missense_Mutation p.R1372K 0.44 tolerated(0.45) benign(0.146) TCGA-EE-A29D-06 2 228882684 228882684 C T SPHKAP Nonsense_Mutation p.W962* 0.41 TCGA-EE-A29D-06 2 228882884 228882884 C T SPHKAP Missense_Mutation p.E896K 0.35 deleterious(0.01) possibly_damaging(0.449) TCGA-EE-A29D-06 2 228883992 228883992 C T SPHKAP Silent p.S526S 0.59 TCGA-EE-A29D-06 2 228884529 228884529 G A SPHKAP Silent p.S347S 0.24 TCGA-EE-A29D-06 2 228884786 228884786 C T SPHKAP Missense_Mutation p.E262K 0.46 tolerated(0.35) benign(0.019) TCGA-EE-A29D-06 2 228886490 228886490 C A SPHKAP Nonsense_Mutation p.E212* 0.43 TCGA-EE-A29D-06 2 231102957 231102957 C T SP140 Silent p.V89V 0.21 TCGA-EE-A29D-06 2 231191969 231191969 G A SP140L 5'UTR 0.44 TCGA-EE-A29D-06 2 231314937 231314937 G A SP100 Missense_Mutation p.E263K 0.32 deleterious(0.05) possibly_damaging(0.486) TCGA-EE-A29D-06 2 231741646 231741646 C T ITM2C Silent p.P175P 0.27 TCGA-EE-A29D-06 2 231742848 231742848 C T ITM2C 3'UTR 0.27 TCGA-EE-A29D-06 2 231775372 231775372 G A GPR55 Silent p.F102F 0.39 TCGA-EE-A29D-06 2 231775703 231775703 C T GPR55 5'UTR 0.37 TCGA-EE-A29D-06 2 232320840 232320840 G A NCL Silent p.S571S 0.30 TCGA-EE-A29D-06 2 232320841 232320841 G A NCL Missense_Mutation p.S571F 0.31 benign(0.099) TCGA-EE-A29D-06 2 232458871 232458871 G A C2orf57 3'UTR 0.24 TCGA-EE-A29D-06 2 233322373 233322373 G A ALPI Silent p.G249G 0.19 TCGA-EE-A29D-06 2 233839559 233839559 C T NGEF Silent p.R14R 0.29 TCGA-EE-A29D-06 2 234346084 234346084 C T DGKD Missense_Mutation p.S294L 0.27 deleterious(0.01) possibly_damaging(0.798) TCGA-EE-A29D-06 2 234355427 234355427 C T DGKD Silent p.F468F 0.58 TCGA-EE-A29D-06 2 234545403 234545403 A G UGT1A10 Missense_Mutation p.T79A 0.18 deleterious(0.02) benign(0.062) TCGA-EE-A29D-06 2 234602022 234602022 C T UGT1A6 Silent p.I124I 0.22 TCGA-EE-A29D-06 2 237240144 237240144 C T IQCA1 Missense_Mutation p.G744E 0.21 deleterious(0) probably_damaging(0.925) TCGA-EE-A29D-06 2 237285828 237285828 C T IQCA1 Silent p.R493R 0.52 TCGA-EE-A29D-06 2 237489334 237489334 G A ACKR3 Missense_Mutation p.G76S 0.43 tolerated(0.12) possibly_damaging(0.849) TCGA-EE-A29D-06 2 238249665 238249665 G A COL6A3 Silent p.L2632L 0.33 TCGA-EE-A29D-06 2 238258824 238258824 C T COL6A3 Missense_Mutation p.G2282E 0.21 unknown(0) TCGA-EE-A29D-06 2 238287747 238287747 G A COL6A3 Missense_Mutation p.R677C 0.26 probably_damaging(0.996) TCGA-EE-A29D-06 2 238449159 238449159 C T MLPH Missense_Mutation p.P425S 0.23 tolerated(0.18) benign(0.13) TCGA-EE-A29D-06 2 238657942 238657942 C T LRRFIP1 Missense_Mutation p.T129I 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 2 238672098 238672098 C T LRRFIP1 Missense_Mutation p.S581F 0.33 deleterious(0) possibly_damaging(0.862) TCGA-EE-A29D-06 2 239176773 239176773 C T PER2 Silent p.K297K 0.31 TCGA-EE-A29D-06 2 240969754 240969754 G A OR6B2 Silent p.F31F 0.10 TCGA-EE-A29D-06 2 240985397 240985397 G A OR6B3 Silent p.F31F 0.28 TCGA-EE-A29D-06 2 241706377 241706377 C T KIF1A Missense_Mutation p.E547K 0.36 tolerated(0.18) benign(0.199) TCGA-EE-A29D-06 2 241813430 241813430 C T AGXT Silent p.L211L 0.16 TCGA-EE-A29D-06 2 242065957 242065957 G A PASK Silent p.V791V 0.25 TCGA-EE-A29D-06 2 242814492 242814492 C T CXXC11 Missense_Mutation p.P262L 0.21 tolerated(1) benign(0.015) TCGA-EE-A29D-06 2 24523000 24523000 C T ITSN2 Silent p.G374G 0.36 TCGA-EE-A29D-06 2 25016342 25016342 G A CENPO 5'UTR 0.14 TCGA-EE-A29D-06 2 26151895 26151895 G A KIF3C Silent p.S778S 0.77 TCGA-EE-A29D-06 2 26435379 26435379 G A HADHA Intron 0.23 TCGA-EE-A29D-06 2 26461815 26461815 G A HADHA Missense_Mutation p.S56F 0.12 deleterious(0.03) possibly_damaging(0.82) TCGA-EE-A29D-06 2 27015690 27015690 G A CENPA Missense_Mutation p.A93T 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 2 27700155 27700155 G A IFT172 Silent p.T418T 0.12 TCGA-EE-A29D-06 2 27804879 27804879 C T C2orf16 Missense_Mutation p.R1814C 0.29 tolerated(0.19) unknown(0) TCGA-EE-A29D-06 2 27805398 27805398 G A C2orf16 3'UTR 0.22 TCGA-EE-A29D-06 2 28852029 28852029 G A PLB1 Silent p.G1265G 0.08 TCGA-EE-A29D-06 2 29295029 29295029 C T C2orf71 Missense_Mutation p.G700E 0.09 tolerated(1) benign(0) TCGA-EE-A29D-06 2 29497982 29497982 G A ALK Missense_Mutation p.P675L 0.82 deleterious(0.02) benign(0.002) TCGA-EE-A29D-06 2 30975938 30975938 C T CAPN13 Silent p.V356V 0.13 TCGA-EE-A29D-06 2 30980933 30980933 C T CAPN13 Nonsense_Mutation p.W282* 0.11 TCGA-EE-A29D-06 2 31010144 31010144 G A CAPN13 Silent p.F16F 0.67 TCGA-EE-A29D-06 2 31133833 31133833 C T GALNT14 Silent p.K536K 0.80 TCGA-EE-A29D-06 2 31135100 31135100 C T GALNT14 Missense_Mutation p.D502N 0.11 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A29D-06 2 31165103 31165103 C T GALNT14 Missense_Mutation p.D304N 0.73 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A29D-06 2 31215852 31215852 C T GALNT14 Intron 0.16 TCGA-EE-A29D-06 2 31483546 31483546 G A EHD3 Missense_Mutation p.E225K 0.30 deleterious(0.01) benign(0.01) TCGA-EE-A29D-06 2 31587077 31587077 G A XDH Missense_Mutation p.L860F 0.10 deleterious(0.02) possibly_damaging(0.892) TCGA-EE-A29D-06 2 31595132 31595132 G A XDH Silent p.L606L 0.13 TCGA-EE-A29D-06 2 31754406 31754406 G A AL133247.2 Intron 0.22 TCGA-EE-A29D-06 2 32475771 32475771 G A NLRC4 Missense_Mutation p.R388W 0.19 deleterious(0.03) benign(0.006) TCGA-EE-A29D-06 2 32526553 32526553 A T YIPF4 Missense_Mutation p.T196S 0.10 tolerated(0.4) benign(0.056) TCGA-EE-A29D-06 2 33360016 33360016 A T LTBP1 Missense_Mutation p.N397I 0.17 deleterious(0) probably_damaging(0.954) TCGA-EE-A29D-06 2 33745625 33745625 G A RASGRP3 Nonsense_Mutation p.W81* 0.22 TCGA-EE-A29D-06 2 37036078 37036078 G A VIT Missense_Mutation p.G618E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 37872933 37872933 C T CDC42EP3 3'UTR 0.09 TCGA-EE-A29D-06 2 38958934 38958934 C T GALM Silent p.V278V 0.11 TCGA-EE-A29D-06 2 39082213 39082213 A G DHX57 Silent p.L631L 0.12 TCGA-EE-A29D-06 2 39499509 39499509 G A MAP4K3 Missense_Mutation p.P630S 0.17 tolerated(0.78) benign(0.012) TCGA-EE-A29D-06 2 43927645 43927645 C T PLEKHH2 Silent p.S516S 0.76 TCGA-EE-A29D-06 2 44021542 44021580 TTCAAAATGGTAATTATTTTGAGTCTTTTTTGAAAAGTG - DYNC2LI1 Intron 0.50 TCGA-EE-A29D-06 2 44052093 44052093 A C ABCG5 Missense_Mutation p.M280R 0.76 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29D-06 2 44099245 44099245 G A ABCG8 Silent p.T365T 0.17 TCGA-EE-A29D-06 2 44102363 44102363 C T ABCG8 Missense_Mutation p.P523S 0.13 tolerated(0.27) possibly_damaging(0.491) TCGA-EE-A29D-06 2 46574149 46574149 C T EPAS1 Missense_Mutation p.S55F 0.47 deleterious(0) probably_damaging(0.921) TCGA-EE-A29D-06 2 48602520 48602520 A G FOXN2 Missense_Mutation p.T412A 0.15 tolerated(0.2) possibly_damaging(0.672) TCGA-EE-A29D-06 2 48896993 48896993 G A STON1-GTF2A1L Missense_Mutation p.E1075K 0.13 deleterious(0.04) benign(0.013) TCGA-EE-A29D-06 2 48914754 48914754 C T LHCGR 3'UTR 0.21 TCGA-EE-A29D-06 2 49190511 49190511 G A FSHR Silent p.L483L 0.72 TCGA-EE-A29D-06 2 49381436 49381436 G A FSHR Missense_Mutation p.P41S 0.75 tolerated(0.09) benign(0.064) TCGA-EE-A29D-06 2 50699580 50699580 C T NRXN1 Missense_Mutation p.E1074K 0.19 tolerated(0.15) benign(0.241) TCGA-EE-A29D-06 2 54148047 54148047 A C PSME4 Silent p.P747P 0.14 TCGA-EE-A29D-06 2 55489532 55489532 G T MTIF2 Nonsense_Mutation p.S84* 0.13 TCGA-EE-A29D-06 2 60688989 60688989 G A BCL11A Missense_Mutation p.P353L 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29D-06 2 60773370 60773370 C T BCL11A Missense_Mutation p.G41R 0.10 deleterious_low_confidence(0.01) benign(0.093) TCGA-EE-A29D-06 2 61009067 61009067 C T PAPOLG Silent p.A318A 0.18 TCGA-EE-A29D-06 2 61239034 61239034 A G PUS10 5'UTR 0.12 TCGA-EE-A29D-06 2 61610405 61610405 T C USP34 Missense_Mutation p.R274G 0.13 deleterious(0) benign(0.016) TCGA-EE-A29D-06 2 63175538 63175538 C T EHBP1 Silent p.V554V 0.07 TCGA-EE-A29D-06 2 64140414 64140414 G A VPS54 Missense_Mutation p.L789F 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A29D-06 2 68607970 68607970 G A PLEK Missense_Mutation p.G105E 0.79 tolerated(0.16) benign(0.111) TCGA-EE-A29D-06 2 69046310 69046310 C T ARHGAP25 Silent p.L353L 0.15 TCGA-EE-A29D-06 2 70037755 70037755 C T ANXA4 Missense_Mutation p.R143C 0.12 tolerated(0.11) benign(0) TCGA-EE-A29D-06 2 71039588 71039588 C T CLEC4F Silent p.K510K 0.13 TCGA-EE-A29D-06 2 71415581 71415581 G A PAIP2B 3'UTR 0.79 TCGA-EE-A29D-06 2 71576895 71576895 C T ZNF638 Nonsense_Mutation p.Q271* 0.14 TCGA-EE-A29D-06 2 74750657 74750657 G A DQX1 Missense_Mutation p.S275F 0.28 tolerated(0.11) benign(0.157) TCGA-EE-A29D-06 2 74884997 74884997 T C SEMA4F Silent p.F125F 0.73 TCGA-EE-A29D-06 2 74902716 74902716 C T SEMA4F Silent p.A479A 0.12 TCGA-EE-A29D-06 2 74907304 74907304 C T SEMA4F Missense_Mutation p.P761S 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 2 75347738 75347738 G A TACR1 Silent p.I182I 0.20 TCGA-EE-A29D-06 2 77745540 77745540 A C LRRTM4 Nonsense_Mutation p.Y485* 0.17 TCGA-EE-A29D-06 2 79313631 79313631 C T REG1B Splice_Site p.X62_splice 0.38 TCGA-EE-A29D-06 2 79314027 79314027 G A REG1B Missense_Mutation p.P32S 0.41 tolerated(0.2) benign(0) TCGA-EE-A29D-06 2 80085292 80085292 C T CTNNA2 Missense_Mutation p.S151F 0.44 deleterious(0.03) benign(0.056) TCGA-EE-A29D-06 2 80782952 80782952 G A CTNNA2 Missense_Mutation p.E559K 0.64 deleterious(0.01) benign(0.287) TCGA-EE-A29D-06 2 85049122 85049122 G A TRABD2A Silent p.A430A 0.46 TCGA-EE-A29D-06 2 85051084 85051084 C A TRABD2A Nonsense_Mutation p.E394* 0.29 TCGA-EE-A29D-06 2 85892729 85892729 C T SFTPB Silent p.Q206Q 0.24 TCGA-EE-A29D-06 2 86479188 86479188 G A REEP1 Silent p.I110I 0.53 TCGA-EE-A29D-06 2 87013004 87013004 G A CD8A 3'UTR 0.56 TCGA-EE-A29D-06 2 87042560 87042560 C T CD8B 3'Flank 0.41 TCGA-EE-A29D-06 2 88390635 88390635 C T SMYD1 Silent p.N211N 0.33 TCGA-EE-A29D-06 2 88425751 88425751 C T FABP1 Missense_Mutation p.E62K 0.27 tolerated(0.58) benign(0.043) TCGA-EE-A29D-06 2 8871210 8871210 G A KIDINS220 Silent p.S1652S 0.14 TCGA-EE-A29D-06 2 89082383 89082383 A G ANKRD36BP2 RNA 0.09 TCGA-EE-A29D-06 2 89619870 89619870 C T IGKV1-39 5'UTR 0.53 TCGA-EE-A29D-06 2 89987080 89987080 C T IGKV2D-29 3'Flank 0.33 TCGA-EE-A29D-06 2 90193169 90193169 C T IGKV1D-13 Silent p.S32S 0.63 TCGA-EE-A29D-06 2 9541476 9541476 C T ASAP2 Missense_Mutation p.S966F 0.18 tolerated(0.74) possibly_damaging(0.797) TCGA-EE-A29D-06 2 95814960 95814960 G A ZNF514 3'UTR 0.13 TCGA-EE-A29D-06 2 95847389 95847389 C T ZNF2 Silent p.S272S 0.38 TCGA-EE-A29D-06 2 95847747 95847747 C T ZNF2 Missense_Mutation p.H392Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 2 95847805 95847805 C T ZNF2 Missense_Mutation p.S411F 0.16 deleterious(0) probably_damaging(0.973) TCGA-EE-A29D-06 2 96049879 96049879 C T KCNIP3 3'UTR 0.20 TCGA-EE-A29D-06 2 96799172 96799172 G - ASTL Frame_Shift_Del p.M150Cfs*78 0.31 TCGA-EE-A29D-06 2 96956432 96956432 T C SNRNP200 Missense_Mutation p.D848G 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 2 96971227 96971227 G A SNRNP200 5'UTR 0.22 TCGA-EE-A29D-06 2 97276607 97276607 G A KANSL3 Missense_Mutation p.P392L 0.19 deleterious(0.02) possibly_damaging(0.481) TCGA-EE-A29D-06 2 97527320 97527320 C T SEMA4C Silent p.K556K 0.36 TCGA-EE-A29D-06 2 98275434 98275434 G A ACTR1B Silent p.N116N 0.44 TCGA-EE-A29D-06 2 98994205 98994205 G A CNGA3 Missense_Mutation p.E53K 0.17 deleterious(0.03) benign(0.146) TCGA-EE-A29D-06 2 99272743 99272743 G A MGAT4A Intron 0.41 TCGA-EE-A29D-06 2 99448966 99448966 G A KIAA1211L Nonsense_Mutation p.Q129* 0.69 TCGA-EE-A29D-06 2 99936182 99936182 C T TXNDC9 Missense_Mutation p.R215Q 0.21 deleterious(0.04) benign(0.201) TCGA-EE-A29D-06 3 101044921 101044921 G A SENP7 Missense_Mutation p.P1007S 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 101044924 101044924 C T SENP7 Missense_Mutation p.D1006N 0.42 tolerated(0.8) probably_damaging(0.918) TCGA-EE-A29D-06 3 101062675 101062675 G A SENP7 Missense_Mutation p.P654L 0.20 tolerated(0.65) probably_damaging(0.932) TCGA-EE-A29D-06 3 101062676 101062676 G A SENP7 Missense_Mutation p.P654S 0.17 tolerated(0.4) benign(0.356) TCGA-EE-A29D-06 3 101219918 101219918 G A SENP7 Missense_Mutation p.S29L 0.31 tolerated(0.65) benign(0) TCGA-EE-A29D-06 3 101232049 101232049 G A SENP7 5'Flank 0.12 TCGA-EE-A29D-06 3 101284528 101284528 C T TRMT10C Silent p.F301F 0.25 TCGA-EE-A29D-06 3 101483990 101483990 C T CEP97 Silent p.S731S 0.24 TCGA-EE-A29D-06 3 101540541 101540541 C T NXPE3 Missense_Mutation p.P475S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 3 10258730 10258730 C T IRAK2 Nonsense_Mutation p.Q301* 0.66 TCGA-EE-A29D-06 3 10387101 10387101 C T ATP2B2 Silent p.V890V 0.56 TCGA-EE-A29D-06 3 10443912 10443912 C T ATP2B2 Nonsense_Mutation p.W173* 0.27 TCGA-EE-A29D-06 3 105266231 105266231 C T ALCAM Intron 0.21 TCGA-EE-A29D-06 3 108117930 108117930 G A MYH15 Nonsense_Mutation p.Q1661* 0.26 TCGA-EE-A29D-06 3 108124234 108124234 C T MYH15 Missense_Mutation p.E1583K 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 3 108147647 108147647 T G MYH15 Missense_Mutation p.T1152P 0.20 deleterious(0) possibly_damaging(0.832) TCGA-EE-A29D-06 3 108272529 108272529 C T KIAA1524 Silent p.Q791Q 0.26 TCGA-EE-A29D-06 3 108474705 108474705 C T RETNLB Missense_Mutation p.D86N 0.68 tolerated(0.16) possibly_damaging(0.454) TCGA-EE-A29D-06 3 109027097 109027097 G A DPPA2 Missense_Mutation p.S147L 0.21 tolerated(0.06) probably_damaging(0.995) TCGA-EE-A29D-06 3 111632693 111632693 G A PHLDB2 Intron 0.52 TCGA-EE-A29D-06 3 113299474 113299474 C T SIDT1 Missense_Mutation p.P194L 0.22 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 3 113303604 113303604 C T SIDT1 Missense_Mutation p.P299S 0.19 tolerated(0.08) possibly_damaging(0.842) TCGA-EE-A29D-06 3 113374804 113374804 G A KIAA2018 Nonsense_Mutation p.R1909* 0.25 TCGA-EE-A29D-06 3 113619950 113619950 G A GRAMD1C Missense_Mutation p.E205K 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 3 11389371 11389371 C T ATG7 Silent p.I382I 0.19 TCGA-EE-A29D-06 3 118866229 118866229 G A C3orf30 Missense_Mutation p.S398N 0.30 tolerated(0.1) benign(0.362) TCGA-EE-A29D-06 3 119121009 119121009 C T ARHGAP31 Silent p.L470L 0.68 TCGA-EE-A29D-06 3 119236139 119236139 C T TIMMDC1 Silent p.L228L 0.29 TCGA-EE-A29D-06 3 119526231 119526231 G A NR1I2 Missense_Mutation p.G84E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 121126206 121126206 G A STXBP5L Missense_Mutation p.E926K 0.25 tolerated(0.19) possibly_damaging(0.472) TCGA-EE-A29D-06 3 121345807 121345807 C T FBXO40 3'UTR 0.40 TCGA-EE-A29D-06 3 121354633 121354633 C T HCLS1 Missense_Mutation p.E214K 0.32 deleterious(0.03) possibly_damaging(0.621) TCGA-EE-A29D-06 3 121631883 121631883 C T SLC15A2 Silent p.I148I 0.35 TCGA-EE-A29D-06 3 121712496 121712496 C T ILDR1 Missense_Mutation p.G367E 0.43 tolerated(0.32) benign(0.017) TCGA-EE-A29D-06 3 121725944 121725944 G A ILDR1 Silent p.I41I 0.22 TCGA-EE-A29D-06 3 121994834 121994834 G A CASR Missense_Mutation p.G518E 0.61 tolerated(0.06) possibly_damaging(0.894) TCGA-EE-A29D-06 3 122642521 122642521 G A SEMA5B Silent p.Y459Y 0.26 TCGA-EE-A29D-06 3 124165034 124165034 G A KALRN Missense_Mutation p.E1112K 0.20 deleterious(0) probably_damaging(0.973) TCGA-EE-A29D-06 3 124209662 124209662 C T KALRN Silent p.S1504S 0.28 TCGA-EE-A29D-06 3 12422909 12422909 C T PPARG Silent p.S133S 0.24 TCGA-EE-A29D-06 3 124413284 124413284 G A AC080008.1 3'Flank 0.19 TCGA-EE-A29D-06 3 124437846 124437846 G A RP11-71H17.7 5'Flank 0.64 TCGA-EE-A29D-06 3 124642454 124642454 G A MUC13 Missense_Mutation p.S185L 0.39 deleterious(0) probably_damaging(0.951) TCGA-EE-A29D-06 3 124646631 124646631 G A MUC13 Missense_Mutation p.P87S 0.22 tolerated_low_confidence(0.44) benign(0.011) TCGA-EE-A29D-06 3 12574394 12574394 C T TSEN2 3'UTR 0.48 TCGA-EE-A29D-06 3 125876293 125876293 G A ALDH1L1 Silent p.L151L 0.21 TCGA-EE-A29D-06 3 127396527 127396527 C T ABTB1 Silent p.F290F 0.30 TCGA-EE-A29D-06 3 12856863 12856863 G A CAND2 Silent p.P410P 0.29 TCGA-EE-A29D-06 3 128852947 128852947 C T ISY1 Silent p.E233E 0.66 TCGA-EE-A29D-06 3 129286603 129286603 C T PLXND1 Nonsense_Mutation p.W1304* 0.69 TCGA-EE-A29D-06 3 131404723 131404723 G A CPNE4 Missense_Mutation p.T196I 0.19 deleterious(0) benign(0.118) TCGA-EE-A29D-06 3 132047123 132047123 G A ACPP Missense_Mutation p.G45R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 132196696 132196696 G A DNAJC13 Missense_Mutation p.E837K 0.31 deleterious(0.01) possibly_damaging(0.87) TCGA-EE-A29D-06 3 132196698 132196698 G A DNAJC13 Silent p.E837E 0.30 TCGA-EE-A29D-06 3 132207172 132207172 G A DNAJC13 Missense_Mutation p.E1100K 0.30 deleterious(0) possibly_damaging(0.806) TCGA-EE-A29D-06 3 133487006 133487006 C T TF Silent p.F540F 0.76 TCGA-EE-A29D-06 3 133557034 133557034 C T RAB6B Silent p.A157A 0.20 TCGA-EE-A29D-06 3 133647335 133647335 G A C3orf36 Missense_Mutation p.P105S 0.83 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A29D-06 3 13417045 13417045 G A NUP210 Missense_Mutation p.P464S 0.24 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 3 134898711 134898711 G A EPHB1 Missense_Mutation p.G590E 0.29 tolerated(0.06) probably_damaging(0.984) TCGA-EE-A29D-06 3 134911659 134911659 C T EPHB1 Silent p.F708F 0.36 TCGA-EE-A29D-06 3 138461459 138461459 A G PIK3CB Silent p.L188L 0.26 TCGA-EE-A29D-06 3 138665125 138665125 C T FOXL2 Missense_Mutation p.R147H 0.15 deleterious(0) possibly_damaging(0.812) TCGA-EE-A29D-06 3 138738946 138738946 G A PRR23B Silent p.F186F 0.14 TCGA-EE-A29D-06 3 13896136 13896136 C T WNT7A Missense_Mutation p.D155N 0.75 tolerated(0.12) benign(0.08) TCGA-EE-A29D-06 3 140277670 140277670 C T CLSTN2 Missense_Mutation p.T671I 0.17 tolerated(0.18) benign(0.002) TCGA-EE-A29D-06 3 140277683 140277683 G A CLSTN2 Silent p.G675G 0.74 TCGA-EE-A29D-06 3 140866153 140866153 G A SPSB4 3'UTR 0.19 TCGA-EE-A29D-06 3 141304936 141304936 G A RASA2 Missense_Mutation p.E608K 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-EE-A29D-06 3 143704391 143704391 C T C3orf58 Missense_Mutation p.P222S 0.35 tolerated(0.11) possibly_damaging(0.606) TCGA-EE-A29D-06 3 1443140 1443140 A T CNTN6 Missense_Mutation p.I910F 0.78 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 3 147113783 147113783 C T ZIC4 Missense_Mutation p.G232R 0.63 deleterious(0.04) probably_damaging(0.94) TCGA-EE-A29D-06 3 147114146 147114146 C T ZIC4 Missense_Mutation p.G111R 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29D-06 3 147130363 147130363 C G ZIC1 Missense_Mutation p.S347R 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29D-06 3 148459760 148459760 T G AGTR1 Missense_Mutation p.F313C 0.35 deleterious(0.04) benign(0.412) TCGA-EE-A29D-06 3 14862731 14862731 C T FGD5 Missense_Mutation p.S718F 0.17 deleterious(0.03) probably_damaging(0.959) TCGA-EE-A29D-06 3 149095243 149095243 G A TM4SF1 Missense_Mutation p.P31L 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 150421572 150421572 C T FAM194A Silent p.E38E 0.13 TCGA-EE-A29D-06 3 151165712 151165712 G A IGSF10 Missense_Mutation p.P686L 0.26 deleterious(0.02) benign(0.051) TCGA-EE-A29D-06 3 154147202 154147202 G A GPR149 Missense_Mutation p.S68F 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 3 155199680 155199680 G A PLCH1 Missense_Mutation p.P1387S 0.30 tolerated_low_confidence(0.08) benign(0.014) TCGA-EE-A29D-06 3 155200747 155200747 G A PLCH1 Missense_Mutation p.A1031V 0.31 tolerated_low_confidence(0.11) benign(0.016) TCGA-EE-A29D-06 3 156395752 156395752 T G TIPARP Missense_Mutation p.M89R 0.61 deleterious_low_confidence(0.04) benign(0.024) TCGA-EE-A29D-06 3 156866176 156866176 G A CCNL1 Missense_Mutation p.R479W 0.23 deleterious(0) unknown(0) TCGA-EE-A29D-06 3 161147248 161147248 G A RP11-3P17.5 Intron 0.24 TCGA-EE-A29D-06 3 161214886 161214886 C T OTOL1 Silent p.F97F 0.68 TCGA-EE-A29D-06 3 164714397 164714397 G A SI Missense_Mutation p.H1540Y 0.56 deleterious(0.01) possibly_damaging(0.566) TCGA-EE-A29D-06 3 164767591 164767591 G A SI Missense_Mutation p.P529S 0.19 deleterious(0) benign(0.187) TCGA-EE-A29D-06 3 167035383 167035383 G T ZBBX Missense_Mutation p.T329N 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29D-06 3 167184936 167184936 C T SERPINI2 Missense_Mutation p.E129K 0.20 tolerated(0.84) benign(0.032) TCGA-EE-A29D-06 3 167246928 167246928 A G WDR49 Missense_Mutation p.V421A 0.82 tolerated(0.79) benign(0.003) TCGA-EE-A29D-06 3 167272466 167272466 C T WDR49 Intron 0.30 TCGA-EE-A29D-06 3 169099072 169099072 C T MECOM Missense_Mutation p.G117E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 169514631 169514631 T C LRRC34 Silent p.A270A 0.73 TCGA-EE-A29D-06 3 169555381 169555381 G A LRRIQ4 Missense_Mutation p.D549N 0.78 tolerated_low_confidence(0.46) unknown(0) TCGA-EE-A29D-06 3 169579558 169579558 C T LRRC31 Silent p.E73E 0.71 TCGA-EE-A29D-06 3 169644594 169644594 C T SAMD7 Missense_Mutation p.R182C 0.15 deleterious(0.02) possibly_damaging(0.84) TCGA-EE-A29D-06 3 169654139 169654139 C T SAMD7 Missense_Mutation p.H352Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 3 169664489 169664489 C T RP11-379K17.4 RNA 0.20 TCGA-EE-A29D-06 3 169664574 169664574 G A RP11-379K17.4 RNA 0.80 TCGA-EE-A29D-06 3 169889141 169889141 A G PHC3 Intron 0.36 TCGA-EE-A29D-06 3 17053522 17053522 C T PLCL2 Missense_Mutation p.S769F 0.28 deleterious(0) possibly_damaging(0.862) TCGA-EE-A29D-06 3 170802051 170802051 G A TNIK Missense_Mutation p.S1021L 0.41 deleterious(0) probably_damaging(0.98) TCGA-EE-A29D-06 3 170802934 170802934 C T TNIK Missense_Mutation p.E991K 0.14 tolerated(0.58) possibly_damaging(0.695) TCGA-EE-A29D-06 3 17084422 17084422 C T PLCL2 Silent p.I899I 0.24 TCGA-EE-A29D-06 3 172224669 172224669 G A TNFSF10 Silent p.S153S 0.24 TCGA-EE-A29D-06 3 172537976 172537976 C T ECT2 Silent p.F898F 0.20 TCGA-EE-A29D-06 3 17279834 17279834 G A TBC1D5 Missense_Mutation p.S470F 0.32 deleterious(0) possibly_damaging(0.62) TCGA-EE-A29D-06 3 174814907 174814907 A G NAALADL2 Missense_Mutation p.H124R 0.55 tolerated(1) benign(0) TCGA-EE-A29D-06 3 174814908 174814908 C T NAALADL2 Silent p.H124H 0.54 TCGA-EE-A29D-06 3 175473076 175473076 C T NAALADL2 Nonsense_Mutation p.Q687* 0.29 TCGA-EE-A29D-06 3 175520890 175520890 C T NAALADL2 Nonsense_Mutation p.Q763* 0.25 TCGA-EE-A29D-06 3 179616033 179616033 C T PEX5L Missense_Mutation p.G32E 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29D-06 3 180372715 180372715 C T CCDC39 Silent p.T255T 0.33 TCGA-EE-A29D-06 3 183381248 183381248 C T KLHL24 Missense_Mutation p.S308F 0.26 tolerated(0.78) benign(0.002) TCGA-EE-A29D-06 3 183883230 183883230 C T DVL3 Silent p.I238I 0.22 TCGA-EE-A29D-06 3 183963139 183963139 G A ALG3 Missense_Mutation p.P151L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 183975477 183975477 C T ECE2 Missense_Mutation p.A138V 0.31 deleterious_low_confidence(0.01) benign(0.026) TCGA-EE-A29D-06 3 183994366 183994366 G A ECE2 Intron 0.59 TCGA-EE-A29D-06 3 184008852 184008852 A G ECE2 Missense_Mutation p.N738S 0.25 deleterious(0) possibly_damaging(0.786) TCGA-EE-A29D-06 3 184064779 184064779 C T CLCN2 Missense_Mutation p.D816N 0.23 tolerated(0.94) probably_damaging(0.919) TCGA-EE-A29D-06 3 184091292 184091292 C T THPO Missense_Mutation p.G103R 0.20 tolerated(0.2) probably_damaging(0.981) TCGA-EE-A29D-06 3 184103932 184103932 G A CHRD Silent p.G639G 0.28 TCGA-EE-A29D-06 3 184290679 184290679 C T EPHB3 Silent p.L191L 0.50 TCGA-EE-A29D-06 3 184542543 184542543 G T VPS8 Missense_Mutation p.M41I 0.79 tolerated_low_confidence(0.25) benign(0) TCGA-EE-A29D-06 3 184910279 184910279 C T EHHADH Missense_Mutation p.G636E 0.19 tolerated(1) benign(0.001) TCGA-EE-A29D-06 3 185882805 185882805 G A DGKG Missense_Mutation p.L700F 0.23 tolerated(0.16) benign(0.077) TCGA-EE-A29D-06 3 186501362 186501362 C T EIF4A2 5'UTR 0.31 TCGA-EE-A29D-06 3 186507152 186507152 C T EIF4A2 3'UTR 0.30 TCGA-EE-A29D-06 3 186917391 186917391 C T RTP1 Missense_Mutation p.L109F 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 3 186953596 186953596 C T MASP1 Missense_Mutation p.G688E 0.25 deleterious(0) possibly_damaging(0.535) TCGA-EE-A29D-06 3 186968109 186968109 C T MASP1 Silent p.V340V 0.36 TCGA-EE-A29D-06 3 187447775 187447775 G A BCL6 Missense_Mutation p.R140C 0.28 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 3 190347254 190347254 G A IL1RAP Missense_Mutation p.E340K 0.23 tolerated(0.44) benign(0.012) TCGA-EE-A29D-06 3 190366549 190366549 C T IL1RAP Intron 0.22 TCGA-EE-A29D-06 3 191092902 191092902 C T CCDC50 Missense_Mutation p.P167L 0.18 tolerated(0.09) benign(0.116) TCGA-EE-A29D-06 3 191861693 191861693 C T FGF12 3'UTR 0.20 TCGA-EE-A29D-06 3 191861704 191861704 C T FGF12 3'UTR 0.21 TCGA-EE-A29D-06 3 191861750 191861750 G A FGF12 3'UTR 0.42 TCGA-EE-A29D-06 3 193031840 193031840 C T ATP13A5 Silent p.E767E 0.20 TCGA-EE-A29D-06 3 193061825 193061825 G A ATP13A5 Silent p.S278S 0.41 TCGA-EE-A29D-06 3 193156317 193156317 G A ATP13A4 Silent p.A873A 0.45 TCGA-EE-A29D-06 3 193158366 193158366 C T ATP13A4 Missense_Mutation p.E834K 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A29D-06 3 193182888 193182888 G A ATP13A4 Silent p.A434A 0.20 TCGA-EE-A29D-06 3 194080301 194080301 G A LRRC15 Missense_Mutation p.P497L 0.34 deleterious(0.01) benign(0.276) TCGA-EE-A29D-06 3 194346632 194346632 T A TMEM44 Missense_Mutation p.N118Y 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A29D-06 3 194346634 194346634 G A TMEM44 Missense_Mutation p.S117F 0.27 tolerated(0.1) probably_damaging(0.917) TCGA-EE-A29D-06 3 19491679 19491679 G A KCNH8 Missense_Mutation p.R486K 0.22 tolerated(0.28) benign(0.041) TCGA-EE-A29D-06 3 195400716 195400716 C T SDHAP2 RNA 0.88 TCGA-EE-A29D-06 3 195451910 195451910 G A MUC20 Missense_Mutation p.D146N 0.36 tolerated(0.09) possibly_damaging(0.746) TCGA-EE-A29D-06 3 195473958 195473958 C T MUC4 3'UTR 0.31 TCGA-EE-A29D-06 3 195474029 195474029 T G MUC4 3'UTR 0.44 TCGA-EE-A29D-06 3 195517463 195517463 C T MUC4 Missense_Mutation p.V330M 0.19 unknown(0) TCGA-EE-A29D-06 3 195518009 195518009 G T MUC4 Missense_Mutation p.L148I 0.36 unknown(0) TCGA-EE-A29D-06 3 19575316 19575316 G A KCNH8 Missense_Mutation p.D1017N 0.37 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-EE-A29D-06 3 197401251 197401251 G A KIAA0226 3'Flank 0.78 TCGA-EE-A29D-06 3 197401435 197401435 G A KIAA0226 3'Flank 0.61 TCGA-EE-A29D-06 3 21552411 21552411 T C ZNF385D Silent p.A127A 0.73 TCGA-EE-A29D-06 3 24009368 24009368 G T NR1D2 Missense_Mutation p.G466V 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 27215978 27215978 C T NEK10 Missense_Mutation p.D910N 0.33 tolerated(0.08) benign(0.016) TCGA-EE-A29D-06 3 2924882 2924882 C T CNTN4 Missense_Mutation p.P236S 0.48 tolerated(0.74) benign(0.018) TCGA-EE-A29D-06 3 2942398 2942398 G A CNTN4 Missense_Mutation p.D324N 0.22 tolerated(0.22) benign(0.058) TCGA-EE-A29D-06 3 3030152 3030152 G A CNTN4 Silent p.V494V 0.27 TCGA-EE-A29D-06 3 3085292 3085292 C T CNTN4 Silent p.P905P 0.18 TCGA-EE-A29D-06 3 3139681 3139681 G A IL5RA Silent p.I194I 0.29 TCGA-EE-A29D-06 3 32915324 32915324 C T TRIM71 Silent p.Y289Y 0.21 TCGA-EE-A29D-06 3 32933317 32933317 G A TRIM71 3'UTR 0.18 TCGA-EE-A29D-06 3 33058209 33058209 C T GLB1 Missense_Mutation p.D491N 0.33 tolerated(0.07) probably_damaging(1) TCGA-EE-A29D-06 3 35770831 35770831 C T ARPP21 Missense_Mutation p.S387L 0.21 deleterious(0) benign(0.163) TCGA-EE-A29D-06 3 35835204 35835204 C T ARPP21 Silent p.T732T 0.24 TCGA-EE-A29D-06 3 36422171 36422171 G A STAC Silent p.V12V 0.27 TCGA-EE-A29D-06 3 36756795 36756795 C T DCLK3 3'UTR 0.69 TCGA-EE-A29D-06 3 36874177 36874177 G A TRANK1 Silent p.S2255S 0.63 TCGA-EE-A29D-06 3 36875033 36875033 C T TRANK1 Missense_Mutation p.R1970K 0.47 tolerated(0.75) benign(0.002) TCGA-EE-A29D-06 3 36896877 36896877 C T TRANK1 Missense_Mutation p.E1402K 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 36899454 36899454 G A TRANK1 Nonsense_Mutation p.Q543* 0.26 TCGA-EE-A29D-06 3 382482 382482 C T CHL1 Missense_Mutation p.P131S 0.13 deleterious(0.01) benign(0.435) TCGA-EE-A29D-06 3 382592 382592 G A CHL1 Missense_Mutation p.M167I 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 3 38266089 38266089 C T OXSR1 Missense_Mutation p.P244S 0.66 deleterious(0.02) possibly_damaging(0.819) TCGA-EE-A29D-06 3 384699 384699 G A CHL1 Missense_Mutation p.E238K 0.24 tolerated(0.52) benign(0.156) TCGA-EE-A29D-06 3 38596027 38596027 C T SCN5A Missense_Mutation p.G1519D 0.16 deleterious(0) probably_damaging(0.94) TCGA-EE-A29D-06 3 38647555 38647555 G A SCN5A Silent p.L409L 0.31 TCGA-EE-A29D-06 3 38647622 38647622 C T SCN5A Silent p.G386G 0.24 TCGA-EE-A29D-06 3 38941395 38941395 G A SCN11A Missense_Mutation p.S671F 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29D-06 3 38991720 38991720 C T SCN11A Missense_Mutation p.G45E 0.64 tolerated(1) benign(0.076) TCGA-EE-A29D-06 3 39225806 39225806 G A XIRP1 Missense_Mutation p.H1711Y 0.38 tolerated(0.16) benign(0.001) TCGA-EE-A29D-06 3 39226590 39226590 G T XIRP1 Silent p.P1449P 0.60 TCGA-EE-A29D-06 3 39227957 39227957 G A XIRP1 Missense_Mutation p.P994S 0.23 tolerated(0.07) benign(0.002) TCGA-EE-A29D-06 3 39230591 39230591 C T XIRP1 Missense_Mutation p.E116K 0.29 deleterious(0.03) benign(0.216) TCGA-EE-A29D-06 3 39307401 39307401 G A CX3CR1 Silent p.F232F 0.31 TCGA-EE-A29D-06 3 39307821 39307821 C T CX3CR1 Silent p.K92K 0.20 TCGA-EE-A29D-06 3 39452312 39452312 C G RPSA Missense_Mutation p.T107S 0.24 tolerated(0.12) benign(0.009) TCGA-EE-A29D-06 3 40251394 40251394 C T MYRIP Missense_Mutation p.P572L 0.70 tolerated(0.35) benign(0.122) TCGA-EE-A29D-06 3 40457329 40457329 A T ENTPD3 Splice_Site p.X200_splice 0.66 TCGA-EE-A29D-06 3 42445549 42445549 C T LYZL4 Silent p.G120G 0.29 TCGA-EE-A29D-06 3 44685638 44685638 A G ZNF197 Missense_Mutation p.K1006E 0.73 deleterious(0.01) benign(0.001) TCGA-EE-A29D-06 3 44842958 44842958 C G KIF15 Missense_Mutation p.N413K 0.16 tolerated(0.35) benign(0.002) TCGA-EE-A29D-06 3 45153916 45153916 G A CDCP1 Missense_Mutation p.P105L 0.60 deleterious(0.02) possibly_damaging(0.449) TCGA-EE-A29D-06 3 45936395 45936395 C T CCR9 Intron 0.28 TCGA-EE-A29D-06 3 46495814 46495814 G A LTF Silent p.I228I 0.21 TCGA-EE-A29D-06 3 46542359 46542359 C T RTP3 Silent p.I223I 0.75 TCGA-EE-A29D-06 3 46574278 46574278 C T LRRC2 Missense_Mutation p.M204I 0.16 tolerated(0.08) benign(0.079) TCGA-EE-A29D-06 3 46713055 46713055 C T ALS2CL Missense_Mutation p.E902K 0.19 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A29D-06 3 46871983 46871983 C T PRSS42 Missense_Mutation p.G265R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 47030212 47030212 G A NBEAL2 Silent p.K35K 0.28 TCGA-EE-A29D-06 3 47030424 47030424 C T NBEAL2 Missense_Mutation p.A78V 0.30 deleterious(0.04) benign(0.008) TCGA-EE-A29D-06 3 47162137 47162137 G A SETD2 Missense_Mutation p.S1330F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 3 47162162 47162162 G A SETD2 Nonsense_Mutation p.R1322* 0.62 TCGA-EE-A29D-06 3 47604074 47604074 C T CSPG5 3'UTR 0.66 TCGA-EE-A29D-06 3 47887899 47887899 C T DHX30 Missense_Mutation p.A446V 0.38 tolerated(0.2) benign(0.199) TCGA-EE-A29D-06 3 47887900 47887900 C T DHX30 Silent p.A446A 0.38 TCGA-EE-A29D-06 3 47969824 47969824 G A MAP4 Silent p.F103F 0.59 TCGA-EE-A29D-06 3 48422237 48422237 C T FBXW12 Missense_Mutation p.P274S 0.13 deleterious(0) probably_damaging(0.968) TCGA-EE-A29D-06 3 48501565 48501565 C T ATRIP Missense_Mutation p.S371F 0.65 deleterious(0.02) possibly_damaging(0.667) TCGA-EE-A29D-06 3 48561233 48561233 G A PFKFB4 Missense_Mutation p.P375S 0.21 probably_damaging(1) TCGA-EE-A29D-06 3 49720298 49720298 C T APEH Missense_Mutation p.P636S 0.31 tolerated(0.41) benign(0.005) TCGA-EE-A29D-06 3 49728584 49728584 C T RNF123 5'UTR 0.54 TCGA-EE-A29D-06 3 49736478 49736478 C T RNF123 Missense_Mutation p.P235L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 49928020 49928020 C T MST1R Silent p.R1236R 0.23 TCGA-EE-A29D-06 3 50368008 50368008 G A RASSF1 3'UTR 0.34 TCGA-EE-A29D-06 3 50369288 50369288 C T RASSF1 Splice_Site p.X159_splice 0.33 TCGA-EE-A29D-06 3 50683618 50683618 C T MAPKAPK3 Missense_Mutation p.S251F 0.26 deleterious(0) possibly_damaging(0.628) TCGA-EE-A29D-06 3 51352496 51352496 C T DOCK3 Silent p.I1113I 0.66 TCGA-EE-A29D-06 3 51413195 51413195 G A DOCK3 Missense_Mutation p.R1810Q 0.27 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-EE-A29D-06 3 51749974 51749974 T C GRM2 Silent p.L729L 0.24 TCGA-EE-A29D-06 3 51979198 51979198 C T PARP3 Silent p.I280I 0.37 TCGA-EE-A29D-06 3 52327215 52327215 C T GLYCTK 3'UTR 0.67 TCGA-EE-A29D-06 3 52425239 52425239 C T DNAH1 Silent p.D3262D 0.26 TCGA-EE-A29D-06 3 52430761 52430761 G A DNAH1 Missense_Mutation p.C3853Y 0.23 probably_damaging(0.999) TCGA-EE-A29D-06 3 52470034 52470034 A G SEMA3G Missense_Mutation p.L645P 0.58 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 3 52475896 52475896 C T SEMA3G Silent p.V163V 0.50 TCGA-EE-A29D-06 3 52485210 52485210 G A TNNC1 3'UTR 0.25 TCGA-EE-A29D-06 3 52595893 52595900 ATCTCACT - PBRM1 Frame_Shift_Del p.S1339Efs*5 0.68 TCGA-EE-A29D-06 3 52812994 52812994 G A ITIH1 Silent p.K114K 0.26 TCGA-EE-A29D-06 3 52817048 52817048 C T ITIH1 Nonsense_Mutation p.R336* 0.68 TCGA-EE-A29D-06 3 52842610 52842610 G A ITIH3 Silent p.T862T 0.33 TCGA-EE-A29D-06 3 53159945 53159945 G A RFT1 Silent p.I43I 0.47 TCGA-EE-A29D-06 3 53326715 53326715 G A DCP1A Missense_Mutation p.S256L 0.20 tolerated(0.64) benign(0.003) TCGA-EE-A29D-06 3 53844083 53844083 C T CACNA1D Missense_Mutation p.P2004S 0.22 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-EE-A29D-06 3 53853678 53853678 C T CHDH Missense_Mutation p.E382K 0.19 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29D-06 3 54537588 54537588 G A CACNA2D3 Missense_Mutation p.E151K 0.62 deleterious(0.02) benign(0.336) TCGA-EE-A29D-06 3 54604108 54604108 G A CACNA2D3 Missense_Mutation p.D289N 0.39 tolerated(1) benign(0.083) TCGA-EE-A29D-06 3 54962062 54962062 C T LRTM1 5'UTR 0.09 TCGA-EE-A29D-06 3 55504257 55504257 C T WNT5A Missense_Mutation p.E336K 0.33 tolerated(0.1) possibly_damaging(0.608) TCGA-EE-A29D-06 3 56330287 56330287 G A ERC2 Silent p.F278F 0.64 TCGA-EE-A29D-06 3 56468694 56468694 G A ERC2 Silent p.V114V 0.24 TCGA-EE-A29D-06 3 57847687 57847687 T G SLMAP Missense_Mutation p.S280R 0.18 deleterious(0.03) probably_damaging(0.963) TCGA-EE-A29D-06 3 58109198 58109198 G A FLNB Missense_Mutation p.E1169K 0.40 tolerated(0.06) possibly_damaging(0.472) TCGA-EE-A29D-06 3 58510269 58510269 G A ACOX2 Silent p.L470L 0.62 TCGA-EE-A29D-06 3 62319002 62319002 C T C3orf14 Missense_Mutation p.P109S 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 62385095 62385095 C T CADPS Missense_Mutation p.E1350K 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29D-06 3 62459937 62459937 C T CADPS Missense_Mutation p.V1130I 0.38 tolerated(1) benign(0.097) TCGA-EE-A29D-06 3 63542241 63542241 G A SYNPR Missense_Mutation p.V78M 0.42 deleterious(0.05) possibly_damaging(0.61) TCGA-EE-A29D-06 3 64601751 64601751 C T ADAMTS9 Missense_Mutation p.G970E 0.33 tolerated(0.09) benign(0.039) TCGA-EE-A29D-06 3 64619401 64619401 C A ADAMTS9 Missense_Mutation p.V671L 0.65 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29D-06 3 66430726 66430726 C T LRIG1 Silent p.G1081G 0.82 TCGA-EE-A29D-06 3 68055862 68055862 C T FAM19A1 Silent p.F31F 0.21 TCGA-EE-A29D-06 3 68466432 68466432 G A FAM19A1 Missense_Mutation p.G41R 0.74 tolerated(0.07) probably_damaging(1) TCGA-EE-A29D-06 3 69079079 69079079 C T TMF1 Silent p.Q827Q 0.34 TCGA-EE-A29D-06 3 69104521 69104521 G C UBA3 3'UTR 0.31 TCGA-EE-A29D-06 3 69112140 69112140 G A UBA3 Missense_Mutation p.P229L 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 3 71021714 71021714 C T FOXP1 Silent p.K550K 0.25 TCGA-EE-A29D-06 3 7348333 7348333 G A GRM7 Missense_Mutation p.V343M 0.61 deleterious(0.02) benign(0.38) TCGA-EE-A29D-06 3 79639074 79639074 C T ROBO1 5'UTR 0.11 TCGA-EE-A29D-06 3 81548268 81548268 G A GBE1 Missense_Mutation p.S682F 0.40 tolerated(0.76) probably_damaging(1) TCGA-EE-A29D-06 3 85932477 85932477 C T CADM2 Missense_Mutation p.S85F 0.31 deleterious(0) probably_damaging(0.946) TCGA-EE-A29D-06 3 85961590 85961590 C T CADM2 Silent p.F192F 0.63 TCGA-EE-A29D-06 3 86010691 86010691 G A CADM2 Silent p.R281R 0.19 TCGA-EE-A29D-06 3 86028341 86028341 C T CADM2 Missense_Mutation p.T326I 0.23 tolerated(0.14) benign(0.11) TCGA-EE-A29D-06 3 86114794 86114794 C T CADM2 Missense_Mutation p.A370V 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 3 87027862 87027862 C T VGLL3 Missense_Mutation p.E73K 0.45 tolerated(0.81) possibly_damaging(0.856) TCGA-EE-A29D-06 3 9074426 9074426 G A SRGAP3 Missense_Mutation p.L483F 0.66 tolerated(0.25) probably_damaging(0.994) TCGA-EE-A29D-06 3 93598108 93598108 G A PROS1 Missense_Mutation p.R515C 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 3 96945167 96945167 C T EPHA6 Missense_Mutation p.P392S 0.63 tolerated(0.17) benign(0.069) TCGA-EE-A29D-06 3 96963065 96963065 G A EPHA6 Missense_Mutation p.G514R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 3 97806208 97806208 C T OR5AC2 Silent p.F64F 0.25 TCGA-EE-A29D-06 3 9781064 9781071 TGTGGATT - BRPF1 Frame_Shift_Del p.V328Cfs*15 0.17 TCGA-EE-A29D-06 3 97852246 97852246 G A OR5H1 Silent p.R235R 0.23 TCGA-EE-A29D-06 3 97983880 97983880 G A OR5H6 Missense_Mutation p.R251Q 0.28 tolerated(0.22) benign(0.06) TCGA-EE-A29D-06 3 98072718 98072718 C T OR5K4 Silent p.S7S 0.37 TCGA-EE-A29D-06 3 98217005 98217005 G A OR5K2 Missense_Mutation p.G161R 0.23 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A29D-06 3 9845661 9845661 C T ARPC4 Silent p.A174A 0.37 TCGA-EE-A29D-06 3 99513594 99513594 G A COL8A1 Silent p.Q283Q 0.30 TCGA-EE-A29D-06 4 100134886 100134886 A C ADH6 Missense_Mutation p.C47G 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 100261799 100261799 G A ADH1C Silent p.S299S 0.37 TCGA-EE-A29D-06 4 100266210 100266210 C T ADH1C Missense_Mutation p.D126N 0.23 possibly_damaging(0.834) TCGA-EE-A29D-06 4 100341729 100341729 C T ADH7 Silent p.V282V 0.13 TCGA-EE-A29D-06 4 101108807 101108807 G A DDIT4L 3'UTR 0.22 TCGA-EE-A29D-06 4 101984452 101984452 G A PPP3CA Missense_Mutation p.P340S 0.16 deleterious(0.01) possibly_damaging(0.745) TCGA-EE-A29D-06 4 102951398 102951398 G A BANK1 Missense_Mutation p.E626K 0.36 deleterious(0.02) benign(0.027) TCGA-EE-A29D-06 4 104054052 104054052 T C CENPE Missense_Mutation p.E2241G 0.32 possibly_damaging(0.656) TCGA-EE-A29D-06 4 10446595 10446595 G A ZNF518B Missense_Mutation p.S453F 0.78 tolerated(0.17) benign(0.401) TCGA-EE-A29D-06 4 104511152 104511152 C T TACR3 Splice_Site p.X362_splice 0.62 TCGA-EE-A29D-06 4 104577453 104577453 G A TACR3 Silent p.I262I 0.52 TCGA-EE-A29D-06 4 106157383 106157383 C T TET2 Missense_Mutation p.H762Y 0.62 deleterious(0.03) benign(0.02) TCGA-EE-A29D-06 4 107114863 107114863 G A TBCK Silent p.F654F 0.13 TCGA-EE-A29D-06 4 107258161 107258161 C T AIMP1 Missense_Mutation p.P271S 0.37 tolerated(0.06) probably_damaging(0.959) TCGA-EE-A29D-06 4 107845189 107845189 C T DKK2 Silent p.A234A 0.14 TCGA-EE-A29D-06 4 107845751 107845751 C T DKK2 Silent p.L160L 0.10 TCGA-EE-A29D-06 4 110605797 110605797 C T CCDC109B Nonsense_Mutation p.R271* 0.44 TCGA-EE-A29D-06 4 110880475 110880475 A G EGF Silent p.K316K 0.63 TCGA-EE-A29D-06 4 110880495 110880495 G A EGF Missense_Mutation p.G323E 0.28 tolerated(0.41) benign(0.071) TCGA-EE-A29D-06 4 111431408 111431408 G A ENPEP Missense_Mutation p.G401E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 113567957 113567957 C T LARP7 Missense_Mutation p.P140L 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 4 11400794 11400794 G A HS3ST1 Missense_Mutation p.P279L 0.81 tolerated(0.07) benign(0.095) TCGA-EE-A29D-06 4 114117600 114117600 C T ANK2 Missense_Mutation p.S88F 0.14 probably_damaging(0.993) TCGA-EE-A29D-06 4 114277387 114277387 C T ANK2 Missense_Mutation p.P2538L 0.16 probably_damaging(1) TCGA-EE-A29D-06 4 114279695 114279695 G A ANK2 Silent p.R3307R 0.19 TCGA-EE-A29D-06 4 114288854 114288854 C T ANK2 Missense_Mutation p.S3722F 0.50 probably_damaging(0.979) TCGA-EE-A29D-06 4 115767064 115767064 G A NDST4 Missense_Mutation p.P677L 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 115769380 115769380 C T NDST4 Missense_Mutation p.G644E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 115891693 115891693 C T NDST4 Missense_Mutation p.D372N 0.09 tolerated(0.34) benign(0.005) TCGA-EE-A29D-06 4 119035961 119035961 G A NDST3 Missense_Mutation p.G357E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 119174748 119174748 G A NDST3 Missense_Mutation p.D832N 0.58 deleterious(0.04) possibly_damaging(0.553) TCGA-EE-A29D-06 4 119234529 119234529 T C PRSS12 Missense_Mutation p.N439S 0.57 tolerated(0.7) benign(0.006) TCGA-EE-A29D-06 4 119948548 119948548 G A SYNPO2 Missense_Mutation p.E342K 0.56 deleterious(0.03) benign(0.17) TCGA-EE-A29D-06 4 119952058 119952058 C G SYNPO2 Missense_Mutation p.L710V 0.38 deleterious(0) probably_damaging(0.99) TCGA-EE-A29D-06 4 120079232 120079232 C T MYOZ2 Missense_Mutation p.S101L 0.54 tolerated(0.16) benign(0.009) TCGA-EE-A29D-06 4 121958354 121958354 G A NDNF Missense_Mutation p.P258S 0.39 tolerated(0.46) benign(0.003) TCGA-EE-A29D-06 4 122085355 122085355 G A TNIP3 Intron 0.64 TCGA-EE-A29D-06 4 122257993 122257993 C T QRFPR Missense_Mutation p.G177E 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A29D-06 4 122766756 122766756 G A BBS7 Missense_Mutation p.S378F 0.24 tolerated(0.7) benign(0.011) TCGA-EE-A29D-06 4 123336679 123336679 G A ADAD1 Missense_Mutation p.M465I 0.31 tolerated(0.41) benign(0.001) TCGA-EE-A29D-06 4 123859365 123859365 T C SPATA5 Silent p.V473V 0.15 TCGA-EE-A29D-06 4 124323620 124323620 C T SPRY1 Missense_Mutation p.R292C 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 4 126369770 126369770 A G FAT4 Silent p.E2533E 0.62 TCGA-EE-A29D-06 4 126370110 126370110 C T FAT4 Missense_Mutation p.P2647S 0.47 probably_damaging(1) TCGA-EE-A29D-06 4 126371727 126371727 G A FAT4 Missense_Mutation p.D3186N 0.20 probably_damaging(0.999) TCGA-EE-A29D-06 4 126371903 126371903 C T FAT4 Silent p.D3244D 0.48 TCGA-EE-A29D-06 4 126372884 126372884 G A FAT4 Silent p.E3571E 0.18 TCGA-EE-A29D-06 4 126373957 126373957 G A FAT4 Missense_Mutation p.G3929E 0.58 probably_damaging(0.996) TCGA-EE-A29D-06 4 126411518 126411518 C T FAT4 Missense_Mutation p.T4514I 0.53 probably_damaging(0.994) TCGA-EE-A29D-06 4 126411586 126411586 C T FAT4 Missense_Mutation p.P4537S 0.15 possibly_damaging(0.773) TCGA-EE-A29D-06 4 1348913 1348913 C T UVSSA Silent p.T352T 0.45 TCGA-EE-A29D-06 4 138452388 138452388 G A PCDH18 Silent p.F285F 0.48 TCGA-EE-A29D-06 4 138452587 138452587 G A PCDH18 Missense_Mutation p.S219L 0.52 tolerated(0.66) possibly_damaging(0.72) TCGA-EE-A29D-06 4 141317036 141317036 C T CLGN Missense_Mutation p.M362I 0.28 deleterious(0.01) benign(0.05) TCGA-EE-A29D-06 4 142642320 142642320 G A IL15 Intron 0.38 TCGA-EE-A29D-06 4 144918699 144918699 C T GYPB Silent p.L88L 0.11 TCGA-EE-A29D-06 4 144920579 144920579 G A GYPB Missense_Mutation p.R54C 0.52 tolerated(0.06) benign(0.385) TCGA-EE-A29D-06 4 146031258 146031258 C T ABCE1 Missense_Mutation p.P137S 0.29 deleterious(0.02) possibly_damaging(0.856) TCGA-EE-A29D-06 4 146697106 146697106 C T ZNF827 Missense_Mutation p.R843K 0.43 tolerated(0.6) benign(0.157) TCGA-EE-A29D-06 4 146807040 146807040 C T ZNF827 Missense_Mutation p.G513R 0.16 tolerated(0.14) benign(0.353) TCGA-EE-A29D-06 4 147179970 147179970 G A SLC10A7 Silent p.I289I 0.55 TCGA-EE-A29D-06 4 147741282 147741282 C T TTC29 Missense_Mutation p.E366K 0.22 tolerated(0.32) benign(0.008) TCGA-EE-A29D-06 4 147861050 147861050 C T TTC29 5'UTR 0.29 TCGA-EE-A29D-06 4 148406809 148406809 G A EDNRA 5'UTR 0.42 TCGA-EE-A29D-06 4 152020778 152020778 C T RPS3A 5'UTR 0.21 TCGA-EE-A29D-06 4 152025030 152025031 - T RPS3A Intron 0.34 TCGA-EE-A29D-06 4 152212279 152212279 G A PRSS48 Missense_Mutation p.G221R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 153249511 153249511 C A FBXW7 Nonsense_Mutation p.G423* 0.48 TCGA-EE-A29D-06 4 155156148 155156148 G A DCHS2 Missense_Mutation p.S2764L 0.24 deleterious(0.04) benign(0.164) TCGA-EE-A29D-06 4 155156308 155156308 C T DCHS2 Missense_Mutation p.E2711K 0.37 tolerated(0.14) benign(0.164) TCGA-EE-A29D-06 4 155241618 155241618 C T DCHS2 Missense_Mutation p.D1190N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 155287521 155287521 G A DCHS2 Missense_Mutation p.P179S 0.62 deleterious(0.03) possibly_damaging(0.88) TCGA-EE-A29D-06 4 155506938 155506938 C T FGA Missense_Mutation p.G548D 0.49 tolerated(0.1) benign(0.031) TCGA-EE-A29D-06 4 155507202 155507202 G A FGA Missense_Mutation p.S460L 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 4 155719082 155719082 C T RBM46 Nonsense_Mutation p.R91* 0.52 TCGA-EE-A29D-06 4 156135713 156135713 C T NPY2R Missense_Mutation p.P208S 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 156136012 156136012 C T NPY2R Silent p.F307F 0.33 TCGA-EE-A29D-06 4 156617985 156617985 G A GUCY1A3 5'UTR 0.43 TCGA-EE-A29D-06 4 156632156 156632156 C T GUCY1A3 Missense_Mutation p.S280L 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29D-06 4 156632249 156632249 G A GUCY1A3 Missense_Mutation p.R311K 0.30 tolerated(0.26) benign(0.026) TCGA-EE-A29D-06 4 157732033 157732033 G A PDGFC Missense_Mutation p.P151S 0.52 tolerated(0.51) possibly_damaging(0.492) TCGA-EE-A29D-06 4 158064987 158064987 C T GLRB Silent p.F260F 0.39 TCGA-EE-A29D-06 4 158073936 158073936 C T GLRB Missense_Mutation p.S324F 0.51 deleterious(0) probably_damaging(0.964) TCGA-EE-A29D-06 4 158262476 158262476 C T GRIA2 Silent p.S635S 0.49 TCGA-EE-A29D-06 4 159154117 159154117 C T TMEM144 Missense_Mutation p.P160S 0.14 tolerated(0.07) benign(0.124) TCGA-EE-A29D-06 4 159154118 159154118 C T TMEM144 Missense_Mutation p.P160L 0.12 tolerated(0.25) benign(0.103) TCGA-EE-A29D-06 4 159812771 159812771 C T FNIP2 Silent p.L1041L 0.41 TCGA-EE-A29D-06 4 159836327 159836327 C T C4orf45 Missense_Mutation p.E181K 0.60 tolerated_low_confidence(0.31) unknown(0) TCGA-EE-A29D-06 4 160268102 160268102 C T RAPGEF2 Missense_Mutation p.L1061F 0.61 deleterious(0) possibly_damaging(0.732) TCGA-EE-A29D-06 4 160277270 160277270 C T RAPGEF2 Silent p.L1478L 0.22 TCGA-EE-A29D-06 4 162307657 162307657 G A FSTL5 Intron 0.50 TCGA-EE-A29D-06 4 164246629 164246629 G A NPY1R Silent p.F327F 0.44 TCGA-EE-A29D-06 4 164246675 164246675 G A NPY1R Missense_Mutation p.S312F 0.43 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 4 165962281 165962281 G A TRIM60 Missense_Mutation p.E353K 0.16 tolerated(0.05) probably_damaging(0.965) TCGA-EE-A29D-06 4 166910643 166910643 G A TLL1 Missense_Mutation p.G94S 0.48 tolerated(0.13) benign(0.032) TCGA-EE-A29D-06 4 166963247 166963247 C T TLL1 Missense_Mutation p.R444C 0.49 deleterious(0.01) possibly_damaging(0.662) TCGA-EE-A29D-06 4 167021975 167021975 C T TLL1 Missense_Mutation p.H997Y 0.35 tolerated(0.33) benign(0.061) TCGA-EE-A29D-06 4 167656164 167656164 C T SPOCK3 Missense_Mutation p.D407N 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29D-06 4 167921597 167921597 C T SPOCK3 Missense_Mutation p.D88N 0.61 deleterious(0) benign(0.157) TCGA-EE-A29D-06 4 169194513 169194513 G A DDX60 Missense_Mutation p.R831C 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29D-06 4 169227849 169227849 T A DDX60 Missense_Mutation p.N96I 0.42 deleterious(0.02) benign(0.243) TCGA-EE-A29D-06 4 169312711 169312711 C T DDX60L Missense_Mutation p.D1299N 0.60 tolerated(0.12) benign(0.443) TCGA-EE-A29D-06 4 169321985 169321985 C T DDX60L Silent p.Q1161Q 0.12 TCGA-EE-A29D-06 4 174448327 174448327 C T HAND2 3'UTR 0.70 TCGA-EE-A29D-06 4 176556040 176556040 G A GPM6A 3'UTR 0.34 TCGA-EE-A29D-06 4 177041242 177041242 C T WDR17 Missense_Mutation p.H202Y 0.14 tolerated(0.54) benign(0.044) TCGA-EE-A29D-06 4 177100687 177100687 C T WDR17 Missense_Mutation p.P1309L 0.52 deleterious(0.01) benign(0.367) TCGA-EE-A29D-06 4 183651392 183651392 T A TENM3 Missense_Mutation p.D875E 0.54 tolerated(0.14) possibly_damaging(0.739) TCGA-EE-A29D-06 4 183675765 183675765 C T TENM3 Silent p.V1415V 0.26 TCGA-EE-A29D-06 4 183713767 183713767 A G TENM3 Missense_Mutation p.N1981S 0.37 deleterious(0.05) possibly_damaging(0.636) TCGA-EE-A29D-06 4 183714115 183714115 C T TENM3 Missense_Mutation p.S2097L 0.32 tolerated(0.1) possibly_damaging(0.602) TCGA-EE-A29D-06 4 184622904 184622904 C T TRAPPC11 Missense_Mutation p.S969F 0.53 deleterious(0.01) benign(0.279) TCGA-EE-A29D-06 4 184932422 184932422 G A STOX2 Missense_Mutation p.E811K 0.23 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-EE-A29D-06 4 185138772 185138772 G A ENPP6 Silent p.F67F 0.31 TCGA-EE-A29D-06 4 186544688 186544688 G A SORBS2 Missense_Mutation p.S728F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 4 186551710 186551710 G A SORBS2 Missense_Mutation p.P343S 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 4 187201727 187201727 G A F11 Missense_Mutation p.M376I 0.18 tolerated(0.49) possibly_damaging(0.467) TCGA-EE-A29D-06 4 187455581 187455581 G A MTNR1A Silent p.F105F 0.30 TCGA-EE-A29D-06 4 187524571 187524571 A C FAT1 Missense_Mutation p.S3703R 0.21 benign(0.005) TCGA-EE-A29D-06 4 188924775 188924775 G A ZFP42 Missense_Mutation p.E272K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 4 189012428 189012428 C A TRIML2 3'UTR 0.42 TCGA-EE-A29D-06 4 189012499 189012499 C T TRIML2 3'UTR 0.55 TCGA-EE-A29D-06 4 20521011 20521011 C T SLIT2 Silent p.L355L 0.20 TCGA-EE-A29D-06 4 20552460 20552460 G A SLIT2 Missense_Mutation p.G834R 0.29 deleterious(0) probably_damaging(0.989) TCGA-EE-A29D-06 4 21305491 21305491 G A KCNIP4 Intron 0.36 TCGA-EE-A29D-06 4 23815590 23815590 C T PPARGC1A Missense_Mutation p.A506T 0.52 tolerated_low_confidence(0.16) benign(0.041) TCGA-EE-A29D-06 4 25665839 25665839 G A SLC34A2 Missense_Mutation p.G89E 0.47 tolerated(0.18) benign(0.076) TCGA-EE-A29D-06 4 25678327 25678327 G A SLC34A2 Missense_Mutation p.E677K 0.30 tolerated_low_confidence(0.66) benign(0.002) TCGA-EE-A29D-06 4 25835180 25835180 G A SEL1L3 Missense_Mutation p.S291L 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 4 2952880 2952880 G A NOP14 Silent p.F321F 0.83 TCGA-EE-A29D-06 4 36069761 36069761 C T ARAP2 Missense_Mutation p.R1628Q 0.36 tolerated(0.2) benign(0.107) TCGA-EE-A29D-06 4 36093595 36093595 C T ARAP2 Missense_Mutation p.E1445K 0.37 deleterious(0) probably_damaging(0.96) TCGA-EE-A29D-06 4 36122927 36122927 G C ARAP2 Missense_Mutation p.I1256M 0.55 tolerated(0.1) benign(0.374) TCGA-EE-A29D-06 4 40045341 40045341 C T RP11-333E13.4 RNA 1.00 TCGA-EE-A29D-06 4 40350962 40350962 C T CHRNA9 Silent p.I143I 0.45 TCGA-EE-A29D-06 4 40440320 40440320 G A RBM47 Silent p.A197A 0.25 TCGA-EE-A29D-06 4 40946957 40946957 G A APBB2 Silent p.S323S 0.90 TCGA-EE-A29D-06 4 42041011 42041011 C T SLC30A9 Silent p.S226S 0.26 TCGA-EE-A29D-06 4 42414941 42414941 C T ATP8A1 Missense_Mutation p.E1163K 0.50 tolerated_low_confidence(0.43) benign(0.084) TCGA-EE-A29D-06 4 42524256 42524256 C T ATP8A1 Missense_Mutation p.R623Q 0.63 tolerated(0.31) benign(0.005) TCGA-EE-A29D-06 4 42895469 42895469 G A GRXCR1 Silent p.Q62Q 0.87 TCGA-EE-A29D-06 4 44684357 44684357 C T GUF1 Nonsense_Mutation p.Q172* 0.87 TCGA-EE-A29D-06 4 46043062 46043062 G A GABRG1 Silent p.F447F 0.46 TCGA-EE-A29D-06 4 46060331 46060331 G A GABRG1 Silent p.F273F 0.43 TCGA-EE-A29D-06 4 46066470 46066470 C T GABRG1 Missense_Mutation p.E205K 0.27 tolerated(1) probably_damaging(0.949) TCGA-EE-A29D-06 4 46312248 46312248 T C GABRA2 Silent p.P167P 0.62 TCGA-EE-A29D-06 4 46314659 46314659 G A GABRA2 Silent p.I110I 0.85 TCGA-EE-A29D-06 4 47428008 47428008 C T GABRB1 Silent p.V466V 0.21 TCGA-EE-A29D-06 4 47525183 47525183 G A ATP10D Missense_Mutation p.G214R 0.20 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 4 47647113 47647113 C T CORIN Missense_Mutation p.D648N 0.33 deleterious(0.01) benign(0.157) TCGA-EE-A29D-06 4 47898590 47898590 G A NFXL1 Missense_Mutation p.H427Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 4 47939103 47939103 G T CNGA1 Missense_Mutation p.H539N 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29D-06 4 47939241 47939241 G A CNGA1 Nonsense_Mutation p.R493* 0.31 TCGA-EE-A29D-06 4 48069581 48069581 C T TXK 3'UTR 0.53 TCGA-EE-A29D-06 4 48490878 48490878 G A SLC10A4 Silent p.E412E 0.31 TCGA-EE-A29D-06 4 48859263 48859264 - A OCIAD1 Frame_Shift_Ins p.N196Kfs*5 0.35 TCGA-EE-A29D-06 4 49000535 49000535 C T CWH43 Missense_Mutation p.R258C 0.72 tolerated(0.18) benign(0.001) TCGA-EE-A29D-06 4 49009250 49009250 C T CWH43 Silent p.L365L 0.27 TCGA-EE-A29D-06 4 52926663 52926663 G A SPATA18 Missense_Mutation p.G56R 0.25 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A29D-06 4 54139995 54139995 G A SCFD2 Nonsense_Mutation p.Q437* 0.98 TCGA-EE-A29D-06 4 54343061 54343061 G A LNX1 Missense_Mutation p.S584L 0.91 deleterious(0.04) benign(0.02) TCGA-EE-A29D-06 4 5458575 5458575 C T STK32B Silent p.I236I 0.75 TCGA-EE-A29D-06 4 55593603 55593603 T C KIT Missense_Mutation p.W557R 0.74 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 4 55599339 55599339 A T KIT Missense_Mutation p.N822I 0.98 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 62812737 62812737 C T LPHN3 Missense_Mutation p.S774F 0.91 deleterious(0) probably_damaging(0.962) TCGA-EE-A29D-06 4 6296833 6296833 C T WFS1 Missense_Mutation p.P260S 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 4 648658 648658 G A PDE6B Missense_Mutation p.E325K 0.82 tolerated(0.09) possibly_damaging(0.582) TCGA-EE-A29D-06 4 68719814 68719814 C T TMPRSS11D Missense_Mutation p.R74K 0.30 tolerated(0.06) benign(0.252) TCGA-EE-A29D-06 4 68934444 68934444 C T TMPRSS11F Missense_Mutation p.G216E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 69334625 69334625 T C TMPRSS11E Missense_Mutation p.L96S 0.84 deleterious(0) probably_damaging(0.969) TCGA-EE-A29D-06 4 69403478 69403478 C T UGT2B17 Nonsense_Mutation p.W486* 0.38 TCGA-EE-A29D-06 4 69513019 69513019 C T UGT2B15 Missense_Mutation p.E466K 0.40 deleterious(0.03) possibly_damaging(0.651) TCGA-EE-A29D-06 4 69962703 69962703 C T UGT2B7 Silent p.P155P 0.42 TCGA-EE-A29D-06 4 70152500 70152500 G A UGT2B28 Missense_Mutation p.E301K 0.43 tolerated(0.15) benign(0.27) TCGA-EE-A29D-06 4 70513183 70513183 G A UGT2A1 Silent p.F60F 0.24 TCGA-EE-A29D-06 4 70715264 70715264 C T SULT1E1 Silent p.R129R 0.58 TCGA-EE-A29D-06 4 71099752 71099752 G A FDCSP Missense_Mutation p.E36K 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-EE-A29D-06 4 71201725 71201725 C T CABS1 Silent p.F323F 0.19 TCGA-EE-A29D-06 4 71346721 71346721 C T MUC7 Missense_Mutation p.P87L 0.61 tolerated(0.22) possibly_damaging(0.483) TCGA-EE-A29D-06 4 71390640 71390640 C T AMTN Silent p.L86L 0.28 TCGA-EE-A29D-06 4 71398172 71398172 G A AMTN Missense_Mutation p.G207E 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.675) TCGA-EE-A29D-06 4 71472212 71472212 G A AMBN Missense_Mutation p.G370E 0.12 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A29D-06 4 71472213 71472213 G A AMBN Silent p.G370G 0.11 TCGA-EE-A29D-06 4 71509277 71509277 G A ENAM Missense_Mutation p.E712K 0.35 deleterious(0.04) benign(0.315) TCGA-EE-A29D-06 4 71509961 71509961 G A ENAM Missense_Mutation p.E940K 0.58 tolerated(0.05) probably_damaging(1) TCGA-EE-A29D-06 4 72397811 72397811 C T SLC4A4 Silent p.I733I 0.44 TCGA-EE-A29D-06 4 72622457 72622457 C T GC Missense_Mutation p.D355N 0.31 tolerated(0.26) benign(0.006) TCGA-EE-A29D-06 4 72635064 72635064 C T GC Missense_Mutation p.E57K 0.38 tolerated(0.17) benign(0.296) TCGA-EE-A29D-06 4 74270111 74270111 C T ALB Missense_Mutation p.R23C 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 4 74283258 74283258 C T ALB Missense_Mutation p.R434C 0.58 deleterious(0.03) benign(0.388) TCGA-EE-A29D-06 4 74352708 74352708 G A AFM Silent p.R169R 0.16 TCGA-EE-A29D-06 4 75937875 75937875 C T PARM1 Missense_Mutation p.S95L 0.15 tolerated(0.23) benign(0.007) TCGA-EE-A29D-06 4 76489685 76489685 A T C4orf26 Missense_Mutation p.K158I 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-EE-A29D-06 4 76489686 76489686 A G C4orf26 Silent p.K158K 0.53 TCGA-EE-A29D-06 4 76730164 76730164 A T USO1 Missense_Mutation p.Q821L 0.48 tolerated(0.08) benign(0.008) TCGA-EE-A29D-06 4 76797712 76797712 C T PPEF2 Missense_Mutation p.E350K 0.60 tolerated(0.52) benign(0.002) TCGA-EE-A29D-06 4 77230699 77230699 G A FAM47E-STBD1 Missense_Mutation p.R208K 0.14 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A29D-06 4 77247083 77247083 T C CCDC158 Silent p.S1028S 0.55 TCGA-EE-A29D-06 4 7730138 7730138 C T SORCS2 Silent p.T977T 0.41 TCGA-EE-A29D-06 4 7730139 7730139 C T SORCS2 Missense_Mutation p.P978S 0.47 tolerated(0.08) probably_damaging(0.99) TCGA-EE-A29D-06 4 77660517 77660517 C T SHROOM3 Silent p.H397H 0.18 TCGA-EE-A29D-06 4 77817707 77817707 C T SOWAHB Silent p.R432R 0.55 TCGA-EE-A29D-06 4 78697514 78697514 G A CNOT6L Missense_Mutation p.P13L 0.38 deleterious(0.02) benign(0.199) TCGA-EE-A29D-06 4 79410076 79410076 G A FRAS1 Missense_Mutation p.E2934K 0.24 possibly_damaging(0.811) TCGA-EE-A29D-06 4 79410210 79410210 G A FRAS1 Silent p.R2978R 0.40 TCGA-EE-A29D-06 4 8021970 8021970 G A ABLIM2 Missense_Mutation p.P443L 0.48 deleterious(0.03) benign(0.158) TCGA-EE-A29D-06 4 8021971 8021971 G A ABLIM2 Missense_Mutation p.P443S 0.48 tolerated(0.33) benign(0.002) TCGA-EE-A29D-06 4 80246584 80246584 C T NAA11 Missense_Mutation p.D150N 0.39 tolerated(0.12) benign(0.03) TCGA-EE-A29D-06 4 81207605 81207605 G A FGF5 Missense_Mutation p.G196R 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 4 82125844 82125844 C T PRKG2 Missense_Mutation p.G120R 0.56 tolerated(0.51) benign(0.149) TCGA-EE-A29D-06 4 8221201 8221201 G A SH3TC1 Silent p.S352S 0.88 TCGA-EE-A29D-06 4 82380646 82380646 G A RASGEF1B Missense_Mutation p.P6L 0.36 tolerated(0.37) benign(0.097) TCGA-EE-A29D-06 4 84516094 84516094 C T AGPAT9 Nonsense_Mutation p.R279* 0.55 TCGA-EE-A29D-06 4 85674877 85674877 G A WDFY3 Silent p.P1904P 0.18 TCGA-EE-A29D-06 4 85781645 85781645 C T WDFY3 Missense_Mutation p.E34K 0.30 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 4 8583242 8583242 C T GPR78 Missense_Mutation p.A178V 0.38 tolerated(0.22) benign(0.349) TCGA-EE-A29D-06 4 8616138 8616138 G A CPZ Silent p.E472E 0.54 TCGA-EE-A29D-06 4 88085211 88085211 G A KLHL8 Missense_Mutation p.P520S 0.23 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 4 90874525 90874525 C T MMRN1 Missense_Mutation p.P1215S 0.55 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 4 94145904 94145904 C T GRID2 Missense_Mutation p.S368F 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 4 96761322 96761322 C T PDHA2 Silent p.S7S 0.57 TCGA-EE-A29D-06 4 9828063 9828063 G A SLC2A9 Silent p.I527I 0.49 TCGA-EE-A29D-06 5 101748841 101748841 C T SLCO6A1 Silent p.G493G 0.38 TCGA-EE-A29D-06 5 101816103 101816103 C T SLCO6A1 Missense_Mutation p.D132N 0.21 tolerated(0.34) benign(0.003) TCGA-EE-A29D-06 5 10282390 10282390 C T CMBL Silent p.K159K 0.10 TCGA-EE-A29D-06 5 106762969 106762969 G A EFNA5 Missense_Mutation p.P123S 0.64 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A29D-06 5 10973741 10973741 C T CTNND2 Missense_Mutation p.D1168N 0.70 deleterious(0.01) benign(0.261) TCGA-EE-A29D-06 5 110809014 110809014 G A CAMK4 Missense_Mutation p.E211K 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 5 111576448 111576448 C T EPB41L4A Nonsense_Mutation p.W285* 0.39 TCGA-EE-A29D-06 5 112175569 112175569 C T APC Silent p.S1426S 0.40 TCGA-EE-A29D-06 5 112178722 112178722 C T APC Silent p.S2477S 0.23 TCGA-EE-A29D-06 5 112364490 112364490 G A MCC Intron 0.53 TCGA-EE-A29D-06 5 112926748 112926748 C T YTHDC2 Missense_Mutation p.S1279F 0.36 deleterious(0.01) benign(0.372) TCGA-EE-A29D-06 5 11364916 11364916 G A CTNND2 Missense_Mutation p.P422S 0.60 deleterious(0) possibly_damaging(0.723) TCGA-EE-A29D-06 5 115783293 115783293 G A SEMA6A Silent p.T703T 0.39 TCGA-EE-A29D-06 5 120022100 120022100 G A PRR16 Missense_Mutation p.R181Q 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 5 1214132 1214132 C T SLC6A19 Missense_Mutation p.S280F 0.61 deleterious(0) probably_damaging(0.987) TCGA-EE-A29D-06 5 1216767 1216767 C T SLC6A19 Missense_Mutation p.R328C 0.19 deleterious(0) possibly_damaging(0.67) TCGA-EE-A29D-06 5 121759225 121759225 G A SNCAIP Missense_Mutation p.D265N 0.51 deleterious(0.01) possibly_damaging(0.455) TCGA-EE-A29D-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.89 tolerated(0.09) possibly_damaging(0.574) TCGA-EE-A29D-06 5 121786421 121786421 G A SNCAIP Missense_Mutation p.E627K 0.56 deleterious(0) benign(0.201) TCGA-EE-A29D-06 5 122143971 122143971 G A SNX2 Splice_Site p.X215_splice 0.57 TCGA-EE-A29D-06 5 1254578 1254578 G A TERT Missense_Mutation p.S1067F 0.64 tolerated(0.74) benign(0.008) TCGA-EE-A29D-06 5 1254580 1254580 G A TERT Silent p.P1066P 0.68 TCGA-EE-A29D-06 5 126206349 126206349 C T MARCH3 Silent p.R246R 0.30 TCGA-EE-A29D-06 5 126791215 126791215 G A MEGF10 Missense_Mutation p.E1050K 0.54 deleterious(0) probably_damaging(0.989) TCGA-EE-A29D-06 5 127686624 127686624 C T FBN2 Silent p.L916L 0.33 TCGA-EE-A29D-06 5 128983558 128983558 G A ADAMTS19 Missense_Mutation p.G652E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 128983559 128983559 G A ADAMTS19 Silent p.G652G 0.19 TCGA-EE-A29D-06 5 131396344 131396344 C T IL3 5'UTR 0.48 TCGA-EE-A29D-06 5 131554251 131554251 G A P4HA2 Silent p.F23F 0.70 TCGA-EE-A29D-06 5 132232073 132232073 C T AFF4 Missense_Mutation p.R750K 0.72 tolerated(0.34) benign(0.054) TCGA-EE-A29D-06 5 132552948 132552948 G A FSTL4 Silent p.V527V 0.67 TCGA-EE-A29D-06 5 132552996 132552996 G A FSTL4 Silent p.N511N 0.28 TCGA-EE-A29D-06 5 132652232 132652232 C T FSTL4 Silent p.Q174Q 0.27 TCGA-EE-A29D-06 5 134120158 134120158 C T DDX46 Silent p.T423T 0.28 TCGA-EE-A29D-06 5 135276703 135276703 C T FBXL21 RNA 0.72 TCGA-EE-A29D-06 5 135283133 135283133 T C LECT2 Missense_Mutation p.K115E 0.31 tolerated(0.12) benign(0.345) TCGA-EE-A29D-06 5 135388740 135388740 C T TGFBI Missense_Mutation p.S353F 0.69 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A29D-06 5 137071383 137071383 C T KLHL3 5'UTR 0.65 TCGA-EE-A29D-06 5 13721196 13721196 C T DNAH5 Silent p.K4064K 0.20 TCGA-EE-A29D-06 5 13737596 13737596 C T DNAH5 Silent p.E3740E 0.61 TCGA-EE-A29D-06 5 13753570 13753570 C T DNAH5 Silent p.K3548K 0.24 TCGA-EE-A29D-06 5 13769101 13769101 G A DNAH5 Missense_Mutation p.P3289S 0.70 possibly_damaging(0.876) TCGA-EE-A29D-06 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.71 TCGA-EE-A29D-06 5 13769713 13769713 C T DNAH5 Missense_Mutation p.G3206E 0.71 probably_damaging(0.982) TCGA-EE-A29D-06 5 13776741 13776741 G A DNAH5 Silent p.F3060F 0.70 TCGA-EE-A29D-06 5 13814812 13814812 C T DNAH5 Missense_Mutation p.E2378K 0.34 possibly_damaging(0.635) TCGA-EE-A29D-06 5 13830773 13830773 C T DNAH5 Silent p.G1998G 0.59 TCGA-EE-A29D-06 5 138378348 138378348 G A SIL1 Silent p.F138F 0.71 TCGA-EE-A29D-06 5 13842004 13842004 G A DNAH5 Nonsense_Mutation p.R1761* 0.66 TCGA-EE-A29D-06 5 13864629 13864629 C T DNAH5 Missense_Mutation p.M1491I 0.22 benign(0.072) TCGA-EE-A29D-06 5 13864735 13864735 A G DNAH5 Missense_Mutation p.L1456P 0.61 probably_damaging(0.928) TCGA-EE-A29D-06 5 13876923 13876923 G A DNAH5 Missense_Mutation p.T1089I 0.22 possibly_damaging(0.507) TCGA-EE-A29D-06 5 139189358 139189358 C T PSD2 Silent p.S111S 0.71 TCGA-EE-A29D-06 5 13922233 13922233 C T DNAH5 Missense_Mutation p.E215K 0.70 benign(0.292) TCGA-EE-A29D-06 5 140062771 140062771 C G HARS Missense_Mutation p.V72L 0.27 tolerated(0.66) benign(0.003) TCGA-EE-A29D-06 5 140167118 140167118 C T PCDHA1 Missense_Mutation p.R415C 0.64 deleterious_low_confidence(0.02) possibly_damaging(0.61) TCGA-EE-A29D-06 5 140168284 140168284 C T PCDHA1 Intron 0.67 TCGA-EE-A29D-06 5 140174612 140174612 C T PCDHA2 Silent p.L21L 0.70 TCGA-EE-A29D-06 5 140182156 140182156 C T PCDHA3 Silent p.S458S 0.27 TCGA-EE-A29D-06 5 140202033 140202033 G A PCDHA5 Missense_Mutation p.V225I 0.26 tolerated_low_confidence(0.05) benign(0.399) TCGA-EE-A29D-06 5 140202440 140202440 G A PCDHA5 Silent p.E360E 0.66 TCGA-EE-A29D-06 5 140207946 140207946 C T PCDHA6 Silent p.I90I 0.58 TCGA-EE-A29D-06 5 140220978 140220978 G A PCDHA8 Nonsense_Mutation p.W24* 0.15 TCGA-EE-A29D-06 5 140222123 140222123 C T PCDHA8 Missense_Mutation p.S406L 0.18 deleterious_low_confidence(0) benign(0.221) TCGA-EE-A29D-06 5 140229536 140229536 G T PCDHA9 Nonsense_Mutation p.E486* 0.96 TCGA-EE-A29D-06 5 140250388 140250388 C T PCDHA11 Missense_Mutation p.T567I 0.72 deleterious_low_confidence(0.01) benign(0.004) TCGA-EE-A29D-06 5 140255890 140255890 C T PCDHA12 Missense_Mutation p.S278F 0.24 tolerated_low_confidence(0.42) benign(0.04) TCGA-EE-A29D-06 5 140256431 140256431 C T PCDHA12 Silent p.P458P 0.21 TCGA-EE-A29D-06 5 140262171 140262171 G A PCDHA13 Silent p.L106L 0.24 TCGA-EE-A29D-06 5 140262210 140262210 G A PCDHA13 Silent p.V119V 0.25 TCGA-EE-A29D-06 5 140263249 140263249 G A PCDHA13 Missense_Mutation p.E466K 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A29D-06 5 140263768 140263768 G A PCDHA13 Missense_Mutation p.E639K 0.25 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-EE-A29D-06 5 140347416 140347416 C T PCDHAC2 Silent p.I355I 0.75 TCGA-EE-A29D-06 5 140347637 140347637 G A PCDHAC2 Missense_Mutation p.R429Q 0.24 deleterious(0) probably_damaging(0.979) TCGA-EE-A29D-06 5 140347843 140347843 G A PCDHAC2 Missense_Mutation p.E498K 0.30 tolerated(0.79) benign(0.063) TCGA-EE-A29D-06 5 140389234 140389234 C T PCDHAC1 Silent p.S868S 0.21 TCGA-EE-A29D-06 5 140431099 140431099 G A PCDHB1 Missense_Mutation p.G15E 0.77 deleterious(0.05) benign(0.003) TCGA-EE-A29D-06 5 140433458 140433458 G A PCDHB1 Silent p.R801R 0.64 TCGA-EE-A29D-06 5 140476483 140476483 C T PCDHB2 Silent p.F703F 0.67 TCGA-EE-A29D-06 5 140502263 140502263 G A PCDHB4 Missense_Mutation p.R228Q 0.25 tolerated_low_confidence(0.16) benign(0.048) TCGA-EE-A29D-06 5 140503187 140503187 G T PCDHB4 Missense_Mutation p.G536V 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29D-06 5 140515225 140515225 G A PCDHB5 Missense_Mutation p.G70E 0.23 tolerated_low_confidence(0.09) benign(0.119) TCGA-EE-A29D-06 5 140515917 140515917 C T PCDHB5 Missense_Mutation p.R301C 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.751) TCGA-EE-A29D-06 5 140517505 140517505 C T PCDHB5 3'UTR 0.18 TCGA-EE-A29D-06 5 140531930 140531930 C T PCDHB6 Missense_Mutation p.L698F 0.21 deleterious(0.01) possibly_damaging(0.767) TCGA-EE-A29D-06 5 140552966 140552966 G A PCDHB7 Missense_Mutation p.D184N 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A29D-06 5 140557898 140557898 G A PCDHB8 Missense_Mutation p.D95N 0.18 deleterious_low_confidence(0.01) benign(0.01) TCGA-EE-A29D-06 5 140557910 140557910 C T PCDHB8 Missense_Mutation p.H99Y 0.16 deleterious_low_confidence(0.03) benign(0.362) TCGA-EE-A29D-06 5 140557970 140557970 C T PCDHB8 Nonsense_Mutation p.Q119* 0.13 TCGA-EE-A29D-06 5 140572699 140572699 C T PCDHB10 Missense_Mutation p.P192S 0.73 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EE-A29D-06 5 140573497 140573497 C T PCDHB10 Silent p.L458L 0.48 TCGA-EE-A29D-06 5 140574308 140574308 C T PCDHB10 Missense_Mutation p.S728L 0.69 tolerated_low_confidence(0.09) benign(0.04) TCGA-EE-A29D-06 5 140594043 140594043 G A PCDHB13 Silent p.E116E 0.26 TCGA-EE-A29D-06 5 140604187 140604187 C T PCDHB14 Silent p.I370I 0.64 TCGA-EE-A29D-06 5 140605096 140605096 C T PCDHB14 Silent p.L673L 0.66 TCGA-EE-A29D-06 5 140605445 140605445 C T PCDHB14 Nonsense_Mutation p.R790* 0.64 TCGA-EE-A29D-06 5 140615632 140615632 C T PCDHB18 RNA 0.24 TCGA-EE-A29D-06 5 140625498 140625498 C T PCDHB15 Nonsense_Mutation p.R118* 0.21 TCGA-EE-A29D-06 5 140626087 140626087 C T PCDHB15 Missense_Mutation p.S314L 0.70 deleterious_low_confidence(0.04) benign(0.043) TCGA-EE-A29D-06 5 140725410 140725410 C T PCDHGA3 Silent p.L604L 0.16 TCGA-EE-A29D-06 5 140730169 140730169 C T PCDHGB1 Silent p.F114F 0.75 TCGA-EE-A29D-06 5 140740892 140740892 C T PCDHGB2 Missense_Mutation p.S397F 0.21 deleterious(0.03) benign(0.337) TCGA-EE-A29D-06 5 140741318 140741318 C T PCDHGB2 Missense_Mutation p.S539L 0.67 deleterious(0.03) benign(0.344) TCGA-EE-A29D-06 5 140746204 140746204 C T PCDHGA5 Silent p.I769I 0.24 TCGA-EE-A29D-06 5 140751020 140751020 C T PCDHGB3 Silent p.S353S 0.18 TCGA-EE-A29D-06 5 140772560 140772560 G A PCDHGA8 Silent p.A60A 0.16 TCGA-EE-A29D-06 5 140772578 140772578 C T PCDHGA8 Silent p.I66I 0.76 TCGA-EE-A29D-06 5 140784826 140784826 C T PCDHGA9 Silent p.I769I 0.65 TCGA-EE-A29D-06 5 140788367 140788367 C T PCDHGB6 Silent p.L200L 0.25 TCGA-EE-A29D-06 5 140798557 140798557 G A PCDHGB7 Silent p.G377G 0.29 TCGA-EE-A29D-06 5 140811979 140811979 C T PCDHGA12 Silent p.F551F 0.20 TCGA-EE-A29D-06 5 140812012 140812012 C T PCDHGA12 Silent p.I562I 0.68 TCGA-EE-A29D-06 5 141021112 141021112 G A FCHSD1 Missense_Mutation p.P676S 0.19 deleterious(0.01) unknown(0) TCGA-EE-A29D-06 5 145239420 145239420 C T GRXCR2 Missense_Mutation p.C208Y 0.66 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 5 147011019 147011019 C T JAKMIP2 Missense_Mutation p.G611D 0.70 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A29D-06 5 147012282 147012282 G A JAKMIP2 Silent p.D579D 0.24 TCGA-EE-A29D-06 5 147665576 147665576 C T SPINK13 Missense_Mutation p.R84C 0.24 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A29D-06 5 149357662 149357662 C T SLC26A2 Silent p.I149I 0.69 TCGA-EE-A29D-06 5 149441314 149441314 C T CSF1R Nonsense_Mutation p.W575* 0.21 TCGA-EE-A29D-06 5 149513468 149513468 G A PDGFRB Silent p.F245F 0.60 TCGA-EE-A29D-06 5 149629796 149629796 T C CAMK2A Missense_Mutation p.K298R 0.68 deleterious_low_confidence(0) benign(0.282) TCGA-EE-A29D-06 5 149631319 149631319 G A CAMK2A Silent p.A229A 0.26 TCGA-EE-A29D-06 5 149681730 149681730 G A ARSI Silent p.I69I 0.14 TCGA-EE-A29D-06 5 150072457 150072457 C T RBM22 Missense_Mutation p.G378S 0.23 tolerated(0.46) benign(0.097) TCGA-EE-A29D-06 5 150112988 150112988 A G DCTN4 Missense_Mutation p.V160A 0.46 tolerated(0.37) benign(0.003) TCGA-EE-A29D-06 5 150275724 150275724 C T ZNF300 Silent p.G375G 0.12 TCGA-EE-A29D-06 5 150311076 150311076 C T ZNF300P1 RNA 0.62 TCGA-EE-A29D-06 5 151784640 151784640 C T NMUR2 Nonsense_Mutation p.W12* 0.21 TCGA-EE-A29D-06 5 153085303 153085303 A C GRIA1 Missense_Mutation p.E510A 0.69 deleterious(0) possibly_damaging(0.703) TCGA-EE-A29D-06 5 153149864 153149864 C T GRIA1 Missense_Mutation p.S730F 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 153190618 153190618 G A GRIA1 Missense_Mutation p.E862K 0.72 tolerated(0.19) benign(0.26) TCGA-EE-A29D-06 5 154394051 154394051 G A KIF4B Missense_Mutation p.R211Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 5 154394629 154394629 C T KIF4B Missense_Mutation p.R404C 0.59 tolerated(0.06) benign(0.023) TCGA-EE-A29D-06 5 156816274 156816274 C T CYFIP2 Silent p.I1069I 0.23 TCGA-EE-A29D-06 5 159520835 159520835 G A PWWP2A Silent p.P274P 0.67 TCGA-EE-A29D-06 5 160042920 160042920 C T ATP10B Missense_Mutation p.E860K 0.19 deleterious(0) probably_damaging(0.949) TCGA-EE-A29D-06 5 16067685 16067685 C T MARCH11 Silent p.Q368Q 0.10 TCGA-EE-A29D-06 5 160757961 160757961 G A GABRB2 Nonsense_Mutation p.Q336* 0.22 TCGA-EE-A29D-06 5 160757962 160757962 G A GABRB2 Silent p.P335P 0.23 TCGA-EE-A29D-06 5 160763709 160763709 C T GABRB2 Silent p.T203T 0.17 TCGA-EE-A29D-06 5 161119189 161119189 G A GABRA6 Missense_Mutation p.E357K 0.69 tolerated(0.82) benign(0.006) TCGA-EE-A29D-06 5 161128747 161128747 G A GABRA6 Missense_Mutation p.D444N 0.61 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A29D-06 5 161324264 161324264 G A GABRA1 Missense_Mutation p.E403K 0.70 tolerated(0.19) benign(0.002) TCGA-EE-A29D-06 5 167653194 167653194 A G TENM2 Missense_Mutation p.N1737S 0.70 tolerated(0.89) benign(0.004) TCGA-EE-A29D-06 5 168093498 168093498 C T SLIT3 Silent p.V1511V 0.26 TCGA-EE-A29D-06 5 168096985 168096985 C T SLIT3 Missense_Mutation p.G1380E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 170147385 170147385 C T KCNIP1 Missense_Mutation p.P94S 0.12 deleterious(0) possibly_damaging(0.614) TCGA-EE-A29D-06 5 170667979 170667979 C T RANBP17 Missense_Mutation p.P824S 0.75 tolerated(0.42) probably_damaging(0.996) TCGA-EE-A29D-06 5 170736468 170736468 C T TLX3 Silent p.P33P 0.60 TCGA-EE-A29D-06 5 171299925 171299925 G A FBXW11 Nonsense_Mutation p.Q410* 0.26 TCGA-EE-A29D-06 5 172745119 172745119 C T STC2 Missense_Mutation p.A214T 0.66 tolerated(0.29) benign(0.009) TCGA-EE-A29D-06 5 17354459 17354459 G A CTD-2139B15.2 RNA 0.80 TCGA-EE-A29D-06 5 176026556 176026556 G A GPRIN1 Missense_Mutation p.P94S 0.80 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A29D-06 5 176308072 176308072 C T HK3 3'UTR 0.82 TCGA-EE-A29D-06 5 176799013 176799013 G A RGS14 Silent p.Q546Q 0.61 TCGA-EE-A29D-06 5 176823738 176823738 C T SLC34A1 Silent p.F393F 0.24 TCGA-EE-A29D-06 5 176958511 176958511 G A FAM193B Intron 0.56 TCGA-EE-A29D-06 5 177022444 177022444 C T TMED9 3'UTR 0.16 TCGA-EE-A29D-06 5 177548666 177548666 C T N4BP3 Silent p.A433A 0.72 TCGA-EE-A29D-06 5 177676141 177676141 C T COL23A1 Missense_Mutation p.E376K 0.72 deleterious(0) probably_damaging(0.918) TCGA-EE-A29D-06 5 178139785 178139785 G A ZNF354A Missense_Mutation p.S365F 0.62 tolerated(0.67) benign(0.022) TCGA-EE-A29D-06 5 178392009 178392009 G A ZNF454 Missense_Mutation p.E202K 0.53 tolerated(0.36) benign(0.069) TCGA-EE-A29D-06 5 178419001 178419001 G A GRM6 Silent p.P196P 0.11 TCGA-EE-A29D-06 5 178419002 178419002 G A GRM6 Missense_Mutation p.P196L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 178541284 178541284 C T ADAMTS2 Missense_Mutation p.E1074K 0.57 deleterious(0.03) probably_damaging(0.928) TCGA-EE-A29D-06 5 178580547 178580547 G A ADAMTS2 Missense_Mutation p.S487F 0.15 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 5 179018724 179018724 G A RUFY1 Silent p.E409E 0.26 TCGA-EE-A29D-06 5 179545842 179545842 G A RASGEF1C Missense_Mutation p.S311F 0.57 deleterious(0) probably_damaging(0.972) TCGA-EE-A29D-06 5 179751867 179751867 G A GFPT2 Missense_Mutation p.R209W 0.18 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29D-06 5 180043377 180043377 C A FLT4 Missense_Mutation p.R1070L 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 180056959 180056959 G A FLT4 Silent p.F220F 0.23 TCGA-EE-A29D-06 5 180582855 180582855 G A OR2V2 Missense_Mutation p.G305R 0.77 tolerated(0.2) benign(0.008) TCGA-EE-A29D-06 5 21752007 21752007 C T CDH12 Missense_Mutation p.E742K 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 5 21802333 21802333 C T CDH12 Missense_Mutation p.G400E 0.07 deleterious(0) probably_damaging(0.988) TCGA-EE-A29D-06 5 22078763 22078763 G A CDH12 Missense_Mutation p.S8F 0.19 tolerated(0.7) probably_damaging(0.962) TCGA-EE-A29D-06 5 22142644 22142644 G A CDH12 Intron 0.50 TCGA-EE-A29D-06 5 24487846 24487846 G A CDH10 Missense_Mutation p.L765F 0.22 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 5 24535346 24535346 C T CDH10 Missense_Mutation p.R230K 0.22 tolerated(1) possibly_damaging(0.623) TCGA-EE-A29D-06 5 24537620 24537620 A T CDH10 Missense_Mutation p.I132N 0.69 deleterious(0) possibly_damaging(0.697) TCGA-EE-A29D-06 5 26890591 26890591 G A CDH9 Missense_Mutation p.L446F 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 5 31302310 31302310 G A CDH6 Missense_Mutation p.E302K 0.77 tolerated(0.14) benign(0.005) TCGA-EE-A29D-06 5 31305297 31305297 A G CDH6 Missense_Mutation p.K339R 0.73 tolerated(0.17) benign(0.062) TCGA-EE-A29D-06 5 31318062 31318062 C T CDH6 Intron 0.68 TCGA-EE-A29D-06 5 33683131 33683131 C T ADAMTS12 Missense_Mutation p.E303K 0.19 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A29D-06 5 35641692 35641692 G A SPEF2 Silent p.K107K 0.28 TCGA-EE-A29D-06 5 35670344 35670344 G A SPEF2 Intron 0.17 TCGA-EE-A29D-06 5 35727907 35727907 G A SPEF2 Silent p.V1015V 0.17 TCGA-EE-A29D-06 5 35806880 35806880 G A SPEF2 Silent p.R1694R 0.61 TCGA-EE-A29D-06 5 35814619 35814619 G A SPEF2 Silent p.E1811E 0.10 TCGA-EE-A29D-06 5 35857027 35857027 C T IL7R 5'UTR 0.29 TCGA-EE-A29D-06 5 35876216 35876216 G A IL7R Silent p.E336E 0.66 TCGA-EE-A29D-06 5 35910561 35910561 G A CAPSL Silent p.V74V 0.47 TCGA-EE-A29D-06 5 36039723 36039723 C T UGT3A2 Missense_Mutation p.E311K 0.23 tolerated(0.06) benign(0.06) TCGA-EE-A29D-06 5 36039810 36039810 C T UGT3A2 Missense_Mutation p.D282N 0.11 deleterious(0.05) benign(0.196) TCGA-EE-A29D-06 5 36257607 36257607 C T RANBP3L Missense_Mutation p.E266K 0.77 tolerated(0.13) possibly_damaging(0.703) TCGA-EE-A29D-06 5 36986360 36986360 T G NIPBL Missense_Mutation p.S1026R 0.68 tolerated_low_confidence(0.48) benign(0.003) TCGA-EE-A29D-06 5 37309285 37309285 G A NUP155 Nonsense_Mutation p.Q905* 0.13 TCGA-EE-A29D-06 5 37516634 37516634 C T WDR70 Missense_Mutation p.H287Y 0.23 deleterious(0.01) benign(0.222) TCGA-EE-A29D-06 5 38403891 38403891 G A EGFLAM Intron 0.70 TCGA-EE-A29D-06 5 38883985 38883985 G A OSMR Missense_Mutation p.E159K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 5 38884131 38884131 G A OSMR Silent p.R207R 0.70 TCGA-EE-A29D-06 5 38884169 38884169 G A OSMR Missense_Mutation p.G220E 0.68 tolerated(0.27) benign(0.011) TCGA-EE-A29D-06 5 38885467 38885467 C T OSMR Silent p.P240P 0.68 TCGA-EE-A29D-06 5 39134959 39134959 G A FYB Missense_Mutation p.S568L 0.71 tolerated(0.23) possibly_damaging(0.791) TCGA-EE-A29D-06 5 40853364 40853364 G A CARD6 Missense_Mutation p.E644K 0.19 deleterious(0.04) benign(0.178) TCGA-EE-A29D-06 5 40958222 40958222 G A C7 Missense_Mutation p.D450N 0.18 tolerated(0.48) benign(0.038) TCGA-EE-A29D-06 5 40958353 40958353 G A C7 Silent p.G493G 0.21 TCGA-EE-A29D-06 5 41005676 41005676 G A MROH2B Missense_Mutation p.S1274F 0.53 tolerated(0.08) possibly_damaging(0.905) TCGA-EE-A29D-06 5 41038977 41038977 C T MROH2B Missense_Mutation p.G692E 0.59 tolerated(0.26) possibly_damaging(0.556) TCGA-EE-A29D-06 5 41039557 41039557 C T MROH2B Missense_Mutation p.R685Q 0.19 tolerated(0.09) benign(0.392) TCGA-EE-A29D-06 5 41313857 41313857 C T PLCXD3 Missense_Mutation p.M276I 0.58 tolerated(1) benign(0.006) TCGA-EE-A29D-06 5 41794831 41794831 G A OXCT1 Missense_Mutation p.L374F 0.16 tolerated(0.05) benign(0.121) TCGA-EE-A29D-06 5 45262060 45262060 G T HCN1 Missense_Mutation p.P879Q 0.64 tolerated_low_confidence(0.49) benign(0.001) TCGA-EE-A29D-06 5 45262552 45262552 C T HCN1 Missense_Mutation p.R715Q 0.14 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-EE-A29D-06 5 45267196 45267196 C T HCN1 Missense_Mutation p.R593Q 0.14 deleterious(0.02) probably_damaging(0.925) TCGA-EE-A29D-06 5 45303699 45303699 A G HCN1 Splice_Site p.X540_splice 0.21 TCGA-EE-A29D-06 5 453731 453731 G A EXOC3 Missense_Mutation p.R204H 0.16 tolerated(0.1) probably_damaging(0.991) TCGA-EE-A29D-06 5 55110772 55110772 C T DDX4 Missense_Mutation p.R587C 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 5 55396030 55396030 G A ANKRD55 Missense_Mutation p.P609S 0.50 tolerated_low_confidence(0.21) benign(0.004) TCGA-EE-A29D-06 5 55407230 55407230 C T ANKRD55 Missense_Mutation p.A449T 0.33 tolerated_low_confidence(0.14) benign(0.015) TCGA-EE-A29D-06 5 56178417 56178417 C T MAP3K1 Silent p.S1130S 0.49 TCGA-EE-A29D-06 5 57752864 57752864 T A PLK2 Missense_Mutation p.H355L 0.55 tolerated(0.21) benign(0.329) TCGA-EE-A29D-06 5 63256583 63256583 C T HTR1A Missense_Mutation p.E322K 0.47 tolerated(0.27) benign(0.033) TCGA-EE-A29D-06 5 64483969 64483969 C T ADAMTS6 Silent p.R928R 0.44 TCGA-EE-A29D-06 5 64492907 64492907 G A ADAMTS6 Missense_Mutation p.P883S 0.50 tolerated(0.27) benign(0.005) TCGA-EE-A29D-06 5 64629908 64629908 C T ADAMTS6 Missense_Mutation p.D360N 0.49 tolerated(0.07) possibly_damaging(0.571) TCGA-EE-A29D-06 5 64887257 64887257 G A TRIM23 3'UTR 0.44 TCGA-EE-A29D-06 5 65081739 65081739 T C NLN Splice_Site p.X320_splice 0.36 TCGA-EE-A29D-06 5 68830609 68830609 C T OCLN Missense_Mutation p.S327F 0.17 tolerated(0.71) benign(0.006) TCGA-EE-A29D-06 5 68830610 68830610 C T OCLN Silent p.S327S 0.18 TCGA-EE-A29D-06 5 70307129 70307129 C T NAIP Nonsense_Mutation p.W214* 0.50 TCGA-EE-A29D-06 5 71492659 71492659 C T MAP1B Silent p.F1159F 0.53 TCGA-EE-A29D-06 5 71493780 71493780 C T MAP1B Missense_Mutation p.P1533L 0.29 probably_damaging(0.999) TCGA-EE-A29D-06 5 74046460 74046460 A G GFM2 Missense_Mutation p.C155R 0.32 deleterious(0.04) probably_damaging(0.913) TCGA-EE-A29D-06 5 75936888 75936888 C T IQGAP2 Missense_Mutation p.S685L 0.31 tolerated(0.28) benign(0.002) TCGA-EE-A29D-06 5 76029048 76029048 T A F2R Missense_Mutation p.L333Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 5 76129575 76129575 G A F2RL1 Silent p.R381R 0.29 TCGA-EE-A29D-06 5 77755108 77755108 C T SCAMP1 Missense_Mutation p.P259S 0.72 tolerated(0.1) benign(0.392) TCGA-EE-A29D-06 5 78411594 78411594 T A BHMT Missense_Mutation p.I13N 0.56 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 5 78941001 78941001 C T PAPD4 Silent p.F269F 0.47 TCGA-EE-A29D-06 5 79024871 79024871 C T CMYA5 Missense_Mutation p.P95S 0.58 possibly_damaging(0.857) TCGA-EE-A29D-06 5 79028721 79028721 C T CMYA5 Missense_Mutation p.S1378F 0.24 benign(0.36) TCGA-EE-A29D-06 5 79366132 79366132 G A THBS4 Missense_Mutation p.G451R 0.41 tolerated(0.34) probably_damaging(0.999) TCGA-EE-A29D-06 5 79375868 79375868 C T THBS4 Silent p.F884F 0.25 TCGA-EE-A29D-06 5 79616572 79616572 G A SPZ1 Missense_Mutation p.A180T 0.55 deleterious(0.02) unknown(0) TCGA-EE-A29D-06 5 79854508 79854508 G C ANKRD34B Missense_Mutation p.T444S 0.65 tolerated(0.05) benign(0.027) TCGA-EE-A29D-06 5 80638562 80638562 C T ACOT12 Missense_Mutation p.D353N 0.49 tolerated(0.25) benign(0.002) TCGA-EE-A29D-06 5 81614000 81614000 C T ATP6AP1L Missense_Mutation p.P186S 0.41 deleterious(0.03) probably_damaging(0.977) TCGA-EE-A29D-06 5 85578736 85578736 C T NBPF22P RNA 0.36 TCGA-EE-A29D-06 5 87498844 87498844 G A TMEM161B Silent p.L283L 0.31 TCGA-EE-A29D-06 5 89941810 89941810 C T GPR98 Missense_Mutation p.T975I 0.40 possibly_damaging(0.86) TCGA-EE-A29D-06 5 89949562 89949562 G A GPR98 Missense_Mutation p.E1391K 0.62 possibly_damaging(0.881) TCGA-EE-A29D-06 5 89953898 89953898 G A GPR98 Missense_Mutation p.G1519R 0.30 probably_damaging(0.996) TCGA-EE-A29D-06 5 90004662 90004662 C T GPR98 Silent p.F2920F 0.55 TCGA-EE-A29D-06 5 90073739 90073739 G A GPR98 Missense_Mutation p.G4182E 0.32 benign(0.102) TCGA-EE-A29D-06 5 90136540 90136540 G A GPR98 Missense_Mutation p.G5586E 0.23 probably_damaging(0.972) TCGA-EE-A29D-06 5 9108305 9108305 G A SEMA5A Nonsense_Mutation p.Q674* 0.60 TCGA-EE-A29D-06 5 94289029 94289029 C T MCTP1 Missense_Mutation p.G292E 0.27 deleterious(0) probably_damaging(0.928) TCGA-EE-A29D-06 5 95761542 95761542 C T PCSK1 Nonsense_Mutation p.W126* 0.38 TCGA-EE-A29D-06 6 100395841 100395841 C T MCHR2 Silent p.R63R 0.24 TCGA-EE-A29D-06 6 100868725 100868725 C T SIM1 Missense_Mutation p.G370R 0.30 tolerated(0.53) benign(0.444) TCGA-EE-A29D-06 6 101847168 101847168 C T GRIK2 Silent p.F5F 0.31 TCGA-EE-A29D-06 6 10830879 10830879 C T MAK Translation_Start_Site p.M1? 0.16 deleterious(0.04) possibly_damaging(0.882) TCGA-EE-A29D-06 6 108497822 108497822 C T NR2E1 Silent p.L125L 0.28 TCGA-EE-A29D-06 6 108497823 108497823 C T NR2E1 Missense_Mutation p.P126S 0.17 tolerated(0.2) benign(0.01) TCGA-EE-A29D-06 6 10876690 10876690 C T GCM2 Silent p.A148A 0.11 TCGA-EE-A29D-06 6 10877426 10877426 G A GCM2 Missense_Mutation p.S97F 0.17 deleterious(0) probably_damaging(0.974) TCGA-EE-A29D-06 6 109819150 109819150 C T AK9 Missense_Mutation p.E1689K 0.31 deleterious(0) probably_damaging(0.937) TCGA-EE-A29D-06 6 111345392 111345392 G C RPF2 Silent p.L201L 0.25 TCGA-EE-A29D-06 6 111688404 111688404 G A REV3L Missense_Mutation p.S2196L 0.39 tolerated(0.42) benign(0.001) TCGA-EE-A29D-06 6 112388206 112388206 G A WISP3 Intron 0.45 TCGA-EE-A29D-06 6 112671701 112671701 G A RFPL4B Silent p.%3D 0.42 TCGA-EE-A29D-06 6 116784568 116784568 G A FAM26F Silent p.Q216Q 0.30 TCGA-EE-A29D-06 6 117121802 117121802 T G GPRC6A Missense_Mutation p.N498T 0.37 tolerated(0.26) benign(0.011) TCGA-EE-A29D-06 6 117243228 117243228 G A RFX6 Missense_Mutation p.E451K 0.38 deleterious(0) probably_damaging(0.926) TCGA-EE-A29D-06 6 117248299 117248299 C A RFX6 Silent p.P665P 0.39 TCGA-EE-A29D-06 6 117622149 117622149 C T ROS1 Missense_Mutation p.E2241K 0.35 tolerated(0.34) benign(0.002) TCGA-EE-A29D-06 6 117681160 117681160 G A ROS1 Missense_Mutation p.P1154S 0.58 deleterious(0) possibly_damaging(0.821) TCGA-EE-A29D-06 6 117896402 117896402 G A GOPC Silent p.L196L 0.49 TCGA-EE-A29D-06 6 118588247 118588247 C T SLC35F1 Silent p.I189I 0.47 TCGA-EE-A29D-06 6 119288073 119288073 G A FAM184A Missense_Mutation p.P987L 0.39 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29D-06 6 119296250 119296250 C T FAM184A Missense_Mutation p.E903K 0.46 deleterious(0) probably_damaging(0.959) TCGA-EE-A29D-06 6 119345519 119345519 C T FAM184A Missense_Mutation p.D207N 0.47 tolerated(1) benign(0.003) TCGA-EE-A29D-06 6 12120946 12120946 T C HIVEP1 Silent p.G306G 0.61 TCGA-EE-A29D-06 6 12296207 12296207 G A EDN1 Missense_Mutation p.M182I 0.15 tolerated(1) benign(0) TCGA-EE-A29D-06 6 123318879 123318879 G A CLVS2 5'UTR 0.24 TCGA-EE-A29D-06 6 126210093 126210093 C T NCOA7 Missense_Mutation p.P298L 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 6 127608726 127608726 C T RNF146 Missense_Mutation p.P323L 0.35 tolerated(0.44) benign(0) TCGA-EE-A29D-06 6 127765408 127765408 G A KIAA0408 Missense_Mutation p.A644V 0.44 tolerated(0.25) benign(0.001) TCGA-EE-A29D-06 6 127768717 127768717 C T KIAA0408 Silent p.T249T 0.56 TCGA-EE-A29D-06 6 128150661 128150661 C T THEMIS Silent p.L223L 0.36 TCGA-EE-A29D-06 6 128176322 128176322 C T THEMIS Missense_Mutation p.E35K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 6 128298085 128298085 C T PTPRK Missense_Mutation p.E1282K 0.33 tolerated(0.06) probably_damaging(0.985) TCGA-EE-A29D-06 6 128330329 128330329 C T PTPRK Missense_Mutation p.G760E 0.17 deleterious(0) possibly_damaging(0.523) TCGA-EE-A29D-06 6 128404936 128404936 C T PTPRK Missense_Mutation p.G500E 0.44 tolerated(0.21) benign(0.368) TCGA-EE-A29D-06 6 129618920 129618920 G A LAMA2 Missense_Mutation p.G983R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 129704298 129704298 C T LAMA2 Missense_Mutation p.T1664I 0.42 deleterious(0.05) possibly_damaging(0.58) TCGA-EE-A29D-06 6 130762131 130762131 G C TMEM200A Missense_Mutation p.L188F 0.33 tolerated(0.7) benign(0.001) TCGA-EE-A29D-06 6 130762623 130762623 G A TMEM200A Silent p.G352G 0.42 TCGA-EE-A29D-06 6 130762727 130762727 C T TMEM200A Missense_Mutation p.S387F 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29D-06 6 131277427 131277427 C T EPB41L2 Missense_Mutation p.E67K 0.45 tolerated(0.09) benign(0.033) TCGA-EE-A29D-06 6 132171144 132171144 G A ENPP1 Missense_Mutation p.G110S 0.52 tolerated(0.13) probably_damaging(0.994) TCGA-EE-A29D-06 6 132938576 132938576 C T TAAR2 Missense_Mutation p.D257N 0.41 deleterious(0.03) probably_damaging(0.963) TCGA-EE-A29D-06 6 133072583 133072583 G A VNN2 Missense_Mutation p.L301F 0.43 tolerated(0.1) benign(0.01) TCGA-EE-A29D-06 6 133078628 133078628 C T VNN2 Missense_Mutation p.E91K 0.50 tolerated(0.07) probably_damaging(0.909) TCGA-EE-A29D-06 6 134495211 134495211 C T SGK1 Missense_Mutation p.V149I 0.42 tolerated(0.09) possibly_damaging(0.878) TCGA-EE-A29D-06 6 135787487 135787487 G A AHI1 Missense_Mutation p.P72S 0.40 tolerated(0.38) benign(0.013) TCGA-EE-A29D-06 6 136472298 136472298 G A PDE7B Missense_Mutation p.G128E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 136667103 136667103 G A MAP7 Silent p.T732T 0.40 TCGA-EE-A29D-06 6 138584480 138584480 G A KIAA1244 Silent p.K620K 0.36 TCGA-EE-A29D-06 6 139564069 139564069 C T TXLNB Missense_Mutation p.R550Q 0.44 tolerated_low_confidence(0.29) benign(0) TCGA-EE-A29D-06 6 142630688 142630688 C T GPR126 Missense_Mutation p.R4C 0.53 tolerated_low_confidence(0.09) possibly_damaging(0.471) TCGA-EE-A29D-06 6 143074868 143074868 G A HIVEP2 Silent p.S2239S 0.59 TCGA-EE-A29D-06 6 144086593 144086593 C G PHACTR2 Missense_Mutation p.S297C 0.49 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-EE-A29D-06 6 146351039 146351039 C T GRM1 Missense_Mutation p.S129F 0.39 deleterious(0) possibly_damaging(0.678) TCGA-EE-A29D-06 6 147703923 147703923 C T STXBP5 Missense_Mutation p.S1068L 0.39 tolerated(0.21) benign(0.001) TCGA-EE-A29D-06 6 149959630 149959630 C A KATNA1 Missense_Mutation p.L18F 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 6 150005324 150005324 G A LATS1 Missense_Mutation p.P301S 0.52 tolerated_low_confidence(0.39) benign(0.001) TCGA-EE-A29D-06 6 150719388 150719388 G A IYD 3'UTR 0.35 TCGA-EE-A29D-06 6 151152722 151152722 G A PLEKHG1 Silent p.K825K 0.33 TCGA-EE-A29D-06 6 151859387 151859387 G A CCDC170 Missense_Mutation p.E132K 0.35 deleterious(0) possibly_damaging(0.782) TCGA-EE-A29D-06 6 152382190 152382190 C T ESR1 Missense_Mutation p.R434W 0.56 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 6 154480970 154480970 G A IPCEF1 Missense_Mutation p.S437F 0.53 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-EE-A29D-06 6 157528064 157528064 C T ARID1B Missense_Mutation p.P1930L 0.45 probably_damaging(0.998) TCGA-EE-A29D-06 6 158505173 158505173 C T SYNJ2 Missense_Mutation p.L1059F 0.37 deleterious_low_confidence(0.03) benign(0.027) TCGA-EE-A29D-06 6 158517028 158517028 G A SYNJ2 Missense_Mutation p.G1375S 0.37 tolerated_low_confidence(0.28) benign(0.004) TCGA-EE-A29D-06 6 159653489 159653489 G A FNDC1 Missense_Mutation p.E649K 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29D-06 6 159677661 159677661 G A FNDC1 Silent p.T1724T 0.43 TCGA-EE-A29D-06 6 160229782 160229782 C T PNLDC1 Silent p.A180A 0.35 TCGA-EE-A29D-06 6 160662507 160662507 G A SLC22A2 Silent p.F500F 0.52 TCGA-EE-A29D-06 6 160677690 160677690 T C SLC22A2 Silent p.V158V 0.36 TCGA-EE-A29D-06 6 160831821 160831821 G A SLC22A3 Silent p.Q306Q 0.36 TCGA-EE-A29D-06 6 160864705 160864705 G A SLC22A3 Missense_Mutation p.G481R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 160953632 160953632 C A LPA Missense_Mutation p.E1964D 0.32 tolerated(0.12) benign(0) TCGA-EE-A29D-06 6 161020673 161020673 G A LPA Missense_Mutation p.P1049L 0.49 tolerated(0.23) probably_damaging(0.992) TCGA-EE-A29D-06 6 161536254 161536254 G A MAP3K4 Missense_Mutation p.D1576N 0.21 tolerated(0.07) benign(0.402) TCGA-EE-A29D-06 6 162683585 162683585 C T PARK2 Silent p.R128R 0.39 TCGA-EE-A29D-06 6 16306643 16306643 G A ATXN1 Missense_Mutation p.P789S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 6 166912059 166912059 G A RPS6KA2 Silent p.P236P 0.34 TCGA-EE-A29D-06 6 167708075 167708075 C T UNC93A Missense_Mutation p.S53F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 167786655 167786655 G A TCP10 3'UTR 0.32 TCGA-EE-A29D-06 6 168348570 168348570 C T MLLT4 Silent p.A1190A 0.54 TCGA-EE-A29D-06 6 168947779 168947779 C T SMOC2 Silent p.I175I 0.37 TCGA-EE-A29D-06 6 170176089 170176089 C G ERMARD Missense_Mutation p.T483R 0.34 tolerated(0.08) benign(0.066) TCGA-EE-A29D-06 6 17541264 17541264 G A CAP2 Missense_Mutation p.G296E 0.36 tolerated(0.06) possibly_damaging(0.529) TCGA-EE-A29D-06 6 17855836 17855836 G A KIF13A Missense_Mutation p.S109F 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 20739777 20739777 C T CDKAL1 Silent p.I133I 0.30 TCGA-EE-A29D-06 6 25726628 25726628 C G HIST1H2AA Missense_Mutation p.R43P 0.18 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-EE-A29D-06 6 25776970 25776970 G A SLC17A4 Intron 0.13 TCGA-EE-A29D-06 6 25799137 25799137 G A SLC17A1 Missense_Mutation p.S427F 0.10 tolerated(1) benign(0.014) TCGA-EE-A29D-06 6 25913506 25913506 C T SLC17A2 3'UTR 0.32 TCGA-EE-A29D-06 6 25926017 25926017 C T SLC17A2 Missense_Mutation p.G3E 0.15 tolerated(1) benign(0.001) TCGA-EE-A29D-06 6 26033692 26033692 G A HIST1H2AB Silent p.L35L 0.21 TCGA-EE-A29D-06 6 26197081 26197081 C T HIST1H3D Missense_Mutation p.G133E 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29D-06 6 26197082 26197082 C T HIST1H3D Missense_Mutation p.G133R 0.22 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 6 26217281 26217281 C T HIST1H2AE Missense_Mutation p.P27S 0.18 deleterious_low_confidence(0.04) benign(0.143) TCGA-EE-A29D-06 6 26240828 26240828 C T HIST1H4F Missense_Mutation p.L59F 0.29 deleterious(0.02) possibly_damaging(0.647) TCGA-EE-A29D-06 6 26273236 26273236 G A HIST1H2BI Silent p.P11P 0.18 TCGA-EE-A29D-06 6 26502023 26502023 G A BTN1A1 Silent p.A95A 0.23 TCGA-EE-A29D-06 6 27368071 27368071 G A ZNF391 Splice_Site 0.37 TCGA-EE-A29D-06 6 27419137 27419137 G A ZNF184 Missense_Mutation p.S734F 0.34 deleterious(0) benign(0.248) TCGA-EE-A29D-06 6 27860480 27860480 G A HIST1H2AM 3'UTR 0.59 TCGA-EE-A29D-06 6 28057075 28057075 G A ZNF165 Missense_Mutation p.E429K 0.15 tolerated(0.07) benign(0.1) TCGA-EE-A29D-06 6 28212791 28212791 G A ZKSCAN4 3'UTR 0.27 TCGA-EE-A29D-06 6 28333681 28333681 C T ZKSCAN3 Silent p.S412S 0.15 TCGA-EE-A29D-06 6 28472261 28472261 C T GPX6 Silent p.P158P 0.17 TCGA-EE-A29D-06 6 28499606 28499606 G A GPX5 Missense_Mutation p.G98D 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 6 28540518 28540518 G A SCAND3 Missense_Mutation p.H1050Y 0.55 tolerated(0.2) benign(0.001) TCGA-EE-A29D-06 6 29012134 29012134 G A OR2W1 Silent p.F273F 0.42 TCGA-EE-A29D-06 6 29012249 29012249 C T OR2W1 Missense_Mutation p.R235Q 0.17 tolerated(0.34) benign(0.011) TCGA-EE-A29D-06 6 29012515 29012515 G A OR2W1 Silent p.I146I 0.18 TCGA-EE-A29D-06 6 29054686 29054686 G A OR2B3 Missense_Mutation p.L114F 0.45 deleterious(0.02) possibly_damaging(0.847) TCGA-EE-A29D-06 6 29054788 29054788 G A OR2B3 Missense_Mutation p.H80Y 0.16 deleterious(0) benign(0.159) TCGA-EE-A29D-06 6 29079863 29079863 C T OR2J3 Missense_Mutation p.L66F 0.32 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 6 29141494 29141494 C T OR2J2 Missense_Mutation p.L28F 0.32 tolerated(0.05) probably_damaging(0.945) TCGA-EE-A29D-06 6 29141978 29141978 C T OR2J2 Missense_Mutation p.S189L 0.17 deleterious(0) possibly_damaging(0.543) TCGA-EE-A29D-06 6 29323235 29323235 G A OR5V1 Silent p.A246A 0.30 TCGA-EE-A29D-06 6 29455668 29455668 C T MAS1L Silent p.G4G 0.48 TCGA-EE-A29D-06 6 29555902 29555902 C T OR2H2 Missense_Mutation p.L61F 0.15 deleterious(0.02) benign(0.085) TCGA-EE-A29D-06 6 29599287 29599287 C T GABBR1 Missense_Mutation p.V59M 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.841) TCGA-EE-A29D-06 6 29638061 29638061 C T MOG Missense_Mutation p.P199L 0.19 tolerated(0.19) benign(0.228) TCGA-EE-A29D-06 6 29796516 29796516 G A HLA-G Silent p.R180R 0.58 TCGA-EE-A29D-06 6 30122033 30122033 C T TRIM10 Missense_Mutation p.D387N 0.21 tolerated(0.14) benign(0.017) TCGA-EE-A29D-06 6 30126277 30126277 C T TRIM10 Missense_Mutation p.D219N 0.34 tolerated(0.24) benign(0.008) TCGA-EE-A29D-06 6 30457270 30457270 C T HLA-E 5'UTR 0.19 TCGA-EE-A29D-06 6 30863263 30863263 C T DDR1 Silent p.P532P 0.16 TCGA-EE-A29D-06 6 30951818 30951818 C T MUC21 Intron 0.23 TCGA-EE-A29D-06 6 31084315 31084315 G A CDSN Silent p.S359S 0.19 TCGA-EE-A29D-06 6 31431924 31431924 G A HCP5 RNA 0.31 TCGA-EE-A29D-06 6 31555011 31555011 C T LST1 5'UTR 0.25 TCGA-EE-A29D-06 6 31584596 31584596 C T AIF1 Silent p.I121I 0.24 TCGA-EE-A29D-06 6 31590882 31590882 T C PRRC2A Intron 0.41 TCGA-EE-A29D-06 6 31630286 31630286 G A GPANK1 Silent p.P276P 0.16 TCGA-EE-A29D-06 6 31644702 31644702 G A LY6G5C 3'UTR 0.16 TCGA-EE-A29D-06 6 31647023 31647023 C T LY6G5C Nonsense_Mutation p.W48* 0.17 TCGA-EE-A29D-06 6 31647024 31647024 C T LY6G5C Nonsense_Mutation p.W48* 0.17 TCGA-EE-A29D-06 6 31685475 31685475 G A LY6G6D Missense_Mutation p.G99E 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A29D-06 6 31696231 31696231 G A DDAH2 Silent p.F156F 0.15 TCGA-EE-A29D-06 6 31913182 31913182 C T C2 3'UTR 0.24 TCGA-EE-A29D-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.37 TCGA-EE-A29D-06 6 31964213 31964213 C T C4A Missense_Mutation p.S1171F 0.14 deleterious(0) probably_damaging(0.952) TCGA-EE-A29D-06 6 32012967 32012967 G A TNXB Silent p.G10G 0.21 TCGA-EE-A29D-06 6 32018087 32018087 C T TNXB 5'Flank 0.19 TCGA-EE-A29D-06 6 32025965 32025965 C T TNXB Silent p.A2565A 0.33 TCGA-EE-A29D-06 6 32036905 32036905 C T TNXB Missense_Mutation p.E1866K 0.21 possibly_damaging(0.737) TCGA-EE-A29D-06 6 32041572 32041572 C T RNA5SP206 3'Flank 0.19 TCGA-EE-A29D-06 6 32065665 32065665 C T TNXB Missense_Mutation p.R104K 0.14 benign(0.002) TCGA-EE-A29D-06 6 32137030 32137030 G A AGPAT1 3'UTR 0.20 TCGA-EE-A29D-06 6 32188876 32188876 C T NOTCH4 Silent p.Q226Q 0.38 TCGA-EE-A29D-06 6 32605317 32605317 G A HLA-DQA1 Missense_Mutation p.A28T 0.25 deleterious(0.03) benign(0.348) TCGA-EE-A29D-06 6 32609155 32609155 G A HLA-DQA1 Missense_Mutation p.E51K 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 32629236 32629236 T G HLA-DQB1 Splice_Site p.X221_splice 0.47 TCGA-EE-A29D-06 6 32782883 32782883 G A HLA-DOB Missense_Mutation p.A100V 0.52 tolerated(0.18) benign(0.034) TCGA-EE-A29D-06 6 32976050 32976050 G A HLA-DOA Intron 0.60 TCGA-EE-A29D-06 6 33141829 33141829 G A COL11A2 Silent p.L744L 0.19 TCGA-EE-A29D-06 6 33144235 33144235 C T COL11A2 Missense_Mutation p.G629E 0.29 probably_damaging(0.969) TCGA-EE-A29D-06 6 33157238 33157238 G A COL11A2 Missense_Mutation p.P31S 0.27 benign(0.015) TCGA-EE-A29D-06 6 33179271 33179271 C T RING1 Silent p.L264L 0.20 TCGA-EE-A29D-06 6 33283441 33283441 G A ZBTB22 Missense_Mutation p.P418L 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29D-06 6 34100795 34100795 G A GRM4 Missense_Mutation p.S160L 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29D-06 6 35086119 35086119 G A TCP11 Missense_Mutation p.P493L 0.21 deleterious(0.03) probably_damaging(0.942) TCGA-EE-A29D-06 6 35088319 35088319 G A TCP11 Missense_Mutation p.P287S 0.17 tolerated(1) benign(0.01) TCGA-EE-A29D-06 6 35207537 35207537 G A SCUBE3 Missense_Mutation p.E280K 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29D-06 6 35259093 35259093 G A ZNF76 Missense_Mutation p.E222K 0.19 deleterious(0.02) possibly_damaging(0.573) TCGA-EE-A29D-06 6 35425696 35425696 T C FANCE Silent p.L302L 0.15 TCGA-EE-A29D-06 6 35446053 35446053 C G TEAD3 Missense_Mutation p.D177H 0.49 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A29D-06 6 35477623 35477623 C T TULP1 Missense_Mutation p.M194I 0.16 tolerated(1) benign(0) TCGA-EE-A29D-06 6 35755682 35755682 G A CLPSL1 Silent p.R87R 0.18 TCGA-EE-A29D-06 6 35762907 35762907 G A CLPS 3'UTR 0.17 TCGA-EE-A29D-06 6 35764997 35764997 C T CLPS Silent p.G23G 0.09 TCGA-EE-A29D-06 6 35773576 35773576 C T LHFPL5 Silent p.L43L 0.23 TCGA-EE-A29D-06 6 36172470 36172470 G A BRPF3 Missense_Mutation p.R495K 0.20 tolerated(0.36) benign(0.005) TCGA-EE-A29D-06 6 36269984 36269984 C T PNPLA1 Silent p.F374F 0.15 TCGA-EE-A29D-06 6 36298290 36298290 C T C6orf222 Missense_Mutation p.D60N 0.20 tolerated(0.18) benign(0.024) TCGA-EE-A29D-06 6 36567607 36567607 C T SRSF3 Intron 0.16 TCGA-EE-A29D-06 6 36931130 36931130 G A PI16 Missense_Mutation p.D338N 0.19 tolerated(0.29) benign(0.001) TCGA-EE-A29D-06 6 38690623 38690623 G A DNAH8 5'Flank 0.19 TCGA-EE-A29D-06 6 38838294 38838294 G A DNAH8 Missense_Mutation p.E2099K 0.25 benign(0.063) TCGA-EE-A29D-06 6 38885909 38885909 C T DNAH8 Missense_Mutation p.P3289L 0.20 probably_damaging(1) TCGA-EE-A29D-06 6 38917246 38917246 G A DNAH8 Missense_Mutation p.G3833R 0.14 possibly_damaging(0.487) TCGA-EE-A29D-06 6 39304299 39304299 C T KIF6 3'UTR 0.29 TCGA-EE-A29D-06 6 39602662 39602662 C T KIF6 Missense_Mutation p.D158N 0.19 tolerated(0.13) possibly_damaging(0.791) TCGA-EE-A29D-06 6 40359793 40359793 C T LRFN2 Silent p.T753T 0.40 TCGA-EE-A29D-06 6 40399581 40399581 C T LRFN2 Silent p.R424R 0.10 TCGA-EE-A29D-06 6 40399582 40399582 C T LRFN2 Missense_Mutation p.R424Q 0.10 tolerated(0.11) benign(0.148) TCGA-EE-A29D-06 6 40400106 40400106 C T LRFN2 Silent p.E249E 0.38 TCGA-EE-A29D-06 6 4068832 4068832 G A FAM217A 3'UTR 0.23 TCGA-EE-A29D-06 6 407616 407616 G A IRF4 3'UTR 0.18 TCGA-EE-A29D-06 6 41185624 41185624 G A TREML3P RNA 0.12 TCGA-EE-A29D-06 6 41196546 41196546 C T TREML4 Missense_Mutation p.S53F 0.26 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A29D-06 6 41766657 41766657 G A USP49 Missense_Mutation p.R561C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 6 42147122 42147122 C T GUCA1A Missense_Mutation p.A196V 0.21 tolerated_low_confidence(0.23) unknown(0) TCGA-EE-A29D-06 6 42224740 42224740 G A TRERF1 Missense_Mutation p.P813S 0.10 deleterious(0) possibly_damaging(0.876) TCGA-EE-A29D-06 6 43014822 43014822 G A CUL7 Silent p.F815F 0.21 TCGA-EE-A29D-06 6 43272546 43272546 G A SLC22A7 3'UTR 0.40 TCGA-EE-A29D-06 6 43473103 43473103 T C TJAP1 Missense_Mutation p.L395P 0.35 tolerated(0.37) benign(0) TCGA-EE-A29D-06 6 43533451 43533451 G A XPO5 Missense_Mutation p.P286L 0.29 deleterious(0) possibly_damaging(0.764) TCGA-EE-A29D-06 6 43582291 43582291 T C POLH Silent p.H713H 0.18 TCGA-EE-A29D-06 6 44222583 44222583 C T SLC35B2 Missense_Mutation p.G387S 0.10 tolerated(0.09) probably_damaging(0.964) TCGA-EE-A29D-06 6 44413592 44413592 C T CDC5L Silent p.P764P 0.43 TCGA-EE-A29D-06 6 46111521 46111521 C T ENPP4 3'UTR 0.27 TCGA-EE-A29D-06 6 46129022 46129022 G A ENPP5 3'UTR 0.16 TCGA-EE-A29D-06 6 46135438 46135438 C T ENPP5 Missense_Mutation p.E188K 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 46656336 46656336 C T TDRD6 Silent p.F157F 0.24 TCGA-EE-A29D-06 6 46802451 46802451 G A MEP1A Silent p.L582L 0.14 TCGA-EE-A29D-06 6 46806750 46806750 G A MEP1A Silent p.G706G 0.16 TCGA-EE-A29D-06 6 46826618 46826618 G A GPR116 Silent p.L1008L 0.14 TCGA-EE-A29D-06 6 46826630 46826630 G A GPR116 Missense_Mutation p.P1004S 0.15 tolerated(0.23) benign(0.02) TCGA-EE-A29D-06 6 46826784 46826784 C T GPR116 Silent p.T952T 0.15 TCGA-EE-A29D-06 6 46991887 46991887 G A GPR110 Missense_Mutation p.S115L 0.52 tolerated(0.12) benign(0.424) TCGA-EE-A29D-06 6 47202494 47202494 G A TNFRSF21 Silent p.F550F 0.17 TCGA-EE-A29D-06 6 47547151 47547151 G A CD2AP Missense_Mutation p.E312K 0.12 deleterious(0) probably_damaging(0.986) TCGA-EE-A29D-06 6 47649681 47649681 C T GPR111 Silent p.I462I 0.12 TCGA-EE-A29D-06 6 486549 486549 G A EXOC2 3'UTR 0.32 TCGA-EE-A29D-06 6 49676914 49676914 G A CRISP2 5'UTR 0.23 TCGA-EE-A29D-06 6 49701545 49701545 C T CRISP3 Silent p.E121E 0.59 TCGA-EE-A29D-06 6 49753680 49753680 G A PGK2 Silent p.I407I 0.51 TCGA-EE-A29D-06 6 49754297 49754297 C T PGK2 Missense_Mutation p.E202K 0.11 deleterious(0.01) benign(0.312) TCGA-EE-A29D-06 6 49754784 49754784 C T PGK2 Silent p.R39R 0.17 TCGA-EE-A29D-06 6 49986775 49986775 C T DEFB110 Missense_Mutation p.G40D 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 6 51512900 51512900 G A PKHD1 Missense_Mutation p.S3776F 0.55 deleterious(0) benign(0.316) TCGA-EE-A29D-06 6 51524264 51524264 C T PKHD1 Missense_Mutation p.E3554K 0.14 deleterious(0) possibly_damaging(0.906) TCGA-EE-A29D-06 6 52334254 52334254 C T EFHC1 Missense_Mutation p.R421C 0.20 deleterious(0.01) probably_damaging(0.909) TCGA-EE-A29D-06 6 52993551 52993551 G A GCM1 Missense_Mutation p.S255F 0.11 deleterious(0.03) benign(0.293) TCGA-EE-A29D-06 6 53364879 53364879 G A GCLC Silent p.L556L 0.40 TCGA-EE-A29D-06 6 54173700 54173700 G A TINAG Missense_Mutation p.E118K 0.17 tolerated(0.57) benign(0.006) TCGA-EE-A29D-06 6 54208088 54208088 G A TINAG Nonsense_Mutation p.W230* 0.71 TCGA-EE-A29D-06 6 54214537 54214537 C T TINAG Missense_Mutation p.P308L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 6 54735196 54735196 G A FAM83B Missense_Mutation p.R51Q 0.19 deleterious(0.01) benign(0.22) TCGA-EE-A29D-06 6 54805016 54805016 G A FAM83B Nonsense_Mutation p.W416* 0.40 TCGA-EE-A29D-06 6 55039415 55039415 C T HCRTR2 Silent p.P10P 0.32 TCGA-EE-A29D-06 6 55196519 55196519 G A GFRAL Missense_Mutation p.G10E 0.18 tolerated(0.3) benign(0.11) TCGA-EE-A29D-06 6 55223849 55223849 G A GFRAL Missense_Mutation p.V289M 0.56 tolerated(0.27) benign(0.213) TCGA-EE-A29D-06 6 55264217 55264217 C T GFRAL Silent p.L367L 0.20 TCGA-EE-A29D-06 6 55360232 55360232 G A HMGCLL1 Silent p.I290I 0.30 TCGA-EE-A29D-06 6 55638936 55638936 C T BMP5 Missense_Mutation p.R313Q 0.20 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 6 56044656 56044656 G A COL21A1 Silent p.I120I 0.34 TCGA-EE-A29D-06 6 56469755 56469755 T A DST Intron 0.29 TCGA-EE-A29D-06 6 56471230 56471230 G A DST Intron 0.27 TCGA-EE-A29D-06 6 56846671 56846671 G A BEND6 Silent p.R21R 0.26 TCGA-EE-A29D-06 6 57246866 57246866 G A PRIM2 Missense_Mutation p.R198K 0.14 deleterious(0.03) possibly_damaging(0.767) TCGA-EE-A29D-06 6 57472382 57472382 C T PRIM2 3'UTR 0.17 TCGA-EE-A29D-06 6 62390829 62390829 G A KHDRBS2 3'UTR 0.43 TCGA-EE-A29D-06 6 62687973 62687973 G A KHDRBS2 Missense_Mutation p.P161S 0.32 deleterious(0) probably_damaging(0.915) TCGA-EE-A29D-06 6 62688103 62688103 C T KHDRBS2 Silent p.R117R 0.36 TCGA-EE-A29D-06 6 63990527 63990527 T A LGSN Missense_Mutation p.D310V 0.13 deleterious(0) benign(0.005) TCGA-EE-A29D-06 6 64394657 64394657 C T PHF3 Missense_Mutation p.S345F 0.24 tolerated_low_confidence(0.07) benign(0.01) TCGA-EE-A29D-06 6 64422956 64422956 C T PHF3 Silent p.P1824P 0.60 TCGA-EE-A29D-06 6 66205150 66205150 C T EYS Missense_Mutation p.D52N 0.16 tolerated_low_confidence(0.31) benign(0.154) TCGA-EE-A29D-06 6 69666580 69666580 C T BAI3 Silent p.S468S 0.20 TCGA-EE-A29D-06 6 69703791 69703791 C T BAI3 Silent p.I622I 0.28 TCGA-EE-A29D-06 6 70916889 70916889 C T COL19A1 Nonsense_Mutation p.Q1114* 0.31 TCGA-EE-A29D-06 6 70917015 70917015 C T COL19A1 3'UTR 0.65 TCGA-EE-A29D-06 6 70944612 70944612 C T COL9A1 Missense_Mutation p.G715E 0.17 probably_damaging(0.995) TCGA-EE-A29D-06 6 71212336 71212336 C T FAM135A Intron 0.22 TCGA-EE-A29D-06 6 7373615 7373615 G A CAGE1 Silent p.A479A 0.21 TCGA-EE-A29D-06 6 73951880 73951880 C T KHDC1 Missense_Mutation p.G138S 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29D-06 6 74072893 74072893 A G KHDC3L Missense_Mutation p.N82S 0.26 tolerated(0.1) benign(0.001) TCGA-EE-A29D-06 6 74078998 74078998 G T OOEP Missense_Mutation p.R101S 0.29 tolerated(0.47) benign(0.071) TCGA-EE-A29D-06 6 74079008 74079008 G A OOEP Silent p.F97F 0.35 TCGA-EE-A29D-06 6 74104737 74104737 C T DDX43 Nonsense_Mutation p.R37* 0.28 TCGA-EE-A29D-06 6 74440165 74440165 G A CD109 Silent p.E125E 0.23 TCGA-EE-A29D-06 6 74519807 74519807 C T CD109 Silent p.H1152H 0.50 TCGA-EE-A29D-06 6 7579756 7579756 C T DSP Silent p.I1111I 0.11 TCGA-EE-A29D-06 6 7581377 7581377 G A DSP Missense_Mutation p.E1652K 0.16 benign(0.11) TCGA-EE-A29D-06 6 76023665 76023665 T C FILIP1 Missense_Mutation p.K628R 0.48 tolerated(0.08) benign(0.326) TCGA-EE-A29D-06 6 76734938 76734938 G A IMPG1 Missense_Mutation p.P179S 0.28 tolerated(0.12) benign(0.026) TCGA-EE-A29D-06 6 76744384 76744384 C T IMPG1 Missense_Mutation p.G141E 0.47 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 6 76751656 76751656 G A IMPG1 Silent p.S85S 0.38 TCGA-EE-A29D-06 6 76751661 76751661 C T IMPG1 Missense_Mutation p.E84K 0.38 deleterious(0) possibly_damaging(0.804) TCGA-EE-A29D-06 6 7727811 7727811 T C BMP6 Missense_Mutation p.F208S 0.30 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A29D-06 6 79664602 79664602 A G PHIP Silent p.L1328L 0.47 TCGA-EE-A29D-06 6 80223170 80223170 A G LCA5 Missense_Mutation p.L160P 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 6 80406229 80406229 G A SH3BGRL2 Missense_Mutation p.E87K 0.36 deleterious(0) probably_damaging(0.983) TCGA-EE-A29D-06 6 80626256 80626256 T A ELOVL4 3'UTR 0.50 TCGA-EE-A29D-06 6 82882186 82882186 G A IBTK Missense_Mutation p.P1281S 0.42 deleterious(0.03) benign(0.434) TCGA-EE-A29D-06 6 84117513 84117513 G A ME1 Silent p.F62F 0.44 TCGA-EE-A29D-06 6 84798839 84798839 G A MRAP2 Missense_Mutation p.R86K 0.46 tolerated(0.11) benign(0.269) TCGA-EE-A29D-06 6 86181159 86181159 G A NT5E Intron 0.34 TCGA-EE-A29D-06 6 87725047 87725047 G A HTR1E 5'UTR 0.41 TCGA-EE-A29D-06 6 87725391 87725391 C T HTR1E Silent p.L113L 0.33 TCGA-EE-A29D-06 6 87725443 87725443 G T HTR1E Missense_Mutation p.A131S 0.53 tolerated(1) possibly_damaging(0.79) TCGA-EE-A29D-06 6 88173757 88173757 T C C6ORF165 Missense_Mutation p.V553A 0.44 tolerated(0.46) benign(0.001) TCGA-EE-A29D-06 6 88853866 88853866 C T CNR1 Silent p.K376K 0.30 TCGA-EE-A29D-06 6 89895081 89895081 G A GABRR1 Silent p.F248F 0.49 TCGA-EE-A29D-06 6 90406197 90406197 G A MDN1 Missense_Mutation p.P3089S 0.39 benign(0.01) TCGA-EE-A29D-06 6 90468627 90468627 A T MDN1 Missense_Mutation p.I838N 0.55 probably_damaging(1) TCGA-EE-A29D-06 6 90660156 90660156 G A BACH2 Missense_Mutation p.L557F 0.42 deleterious(0.01) possibly_damaging(0.748) TCGA-EE-A29D-06 6 93969189 93969189 G A EPHA7 Missense_Mutation p.P603S 0.49 tolerated(0.06) possibly_damaging(0.685) TCGA-EE-A29D-06 6 93979289 93979289 G A EPHA7 Silent p.F513F 0.40 TCGA-EE-A29D-06 6 94120431 94120431 G A EPHA7 Missense_Mutation p.S207F 0.28 tolerated(0.72) possibly_damaging(0.467) TCGA-EE-A29D-06 6 94120760 94120760 C T EPHA7 Silent p.R97R 0.41 TCGA-EE-A29D-06 6 96651774 96651774 T A FUT9 Missense_Mutation p.I248N 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 6 96652177 96652177 G A FUT9 3'UTR 0.64 TCGA-EE-A29D-06 6 96999369 96999369 C T UFL1 Missense_Mutation p.H627Y 0.25 deleterious(0.01) possibly_damaging(0.606) TCGA-EE-A29D-06 6 97000522 97000522 A T UFL1 Missense_Mutation p.N717I 0.25 tolerated(0.12) benign(0.025) TCGA-EE-A29D-06 6 97247344 97247344 C T GPR63 Missense_Mutation p.M88I 0.34 tolerated(0.11) benign(0.056) TCGA-EE-A29D-06 7 100001806 100001806 C T ZCWPW1 Missense_Mutation p.R438K 0.20 tolerated(0.45) benign(0.002) TCGA-EE-A29D-06 7 100159976 100159976 G A AGFG2 Silent p.G324G 0.56 TCGA-EE-A29D-06 7 100184199 100184199 G A FBXO24 5'Flank 0.31 TCGA-EE-A29D-06 7 100187615 100187615 C T FBXO24 Missense_Mutation p.P57S 0.57 tolerated_low_confidence(0.09) possibly_damaging(0.641) TCGA-EE-A29D-06 7 100187894 100187894 G A FBXO24 Nonsense_Mutation p.W117* 0.15 TCGA-EE-A29D-06 7 100239197 100239197 G A TFR2 5'UTR 0.38 TCGA-EE-A29D-06 7 100349491 100349491 A C ZAN Missense_Mutation p.K588T 0.40 benign(0) TCGA-EE-A29D-06 7 100681099 100681099 C T MUC17 Silent p.I2134I 0.38 TCGA-EE-A29D-06 7 100683380 100683380 G A MUC17 Missense_Mutation p.D2895N 0.57 benign(0.097) TCGA-EE-A29D-06 7 100696408 100696408 C T MUC17 Silent p.R4415R 0.29 TCGA-EE-A29D-06 7 101183236 101183236 G A COL26A1 Silent p.E170E 0.21 TCGA-EE-A29D-06 7 101267529 101267529 G C MYL10 Missense_Mutation p.R32G 0.30 tolerated(0.17) possibly_damaging(0.588) TCGA-EE-A29D-06 7 101957705 101957705 C T SH2B2 Missense_Mutation p.S450F 0.28 deleterious(0) probably_damaging(0.953) TCGA-EE-A29D-06 7 102837634 102837634 C T DPY19L2P2 Intron 0.13 TCGA-EE-A29D-06 7 103018150 103018150 C T SLC26A5 Missense_Mutation p.E628K 0.61 tolerated(0.21) probably_damaging(0.998) TCGA-EE-A29D-06 7 103136991 103136991 C G RELN Missense_Mutation p.V3059L 0.15 tolerated(0.87) benign(0.137) TCGA-EE-A29D-06 7 103138606 103138606 G A RELN Missense_Mutation p.L2921F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 7 103141269 103141269 C T RELN Missense_Mutation p.G2864R 0.48 deleterious(0) possibly_damaging(0.641) TCGA-EE-A29D-06 7 103162527 103162527 C T RELN Missense_Mutation p.G2537E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 103230146 103230146 C T RELN Missense_Mutation p.E1348K 0.19 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A29D-06 7 103251224 103251224 C T RELN Missense_Mutation p.E976K 0.21 tolerated(0.2) benign(0.196) TCGA-EE-A29D-06 7 106508004 106508004 G A PIK3CG 5'UTR 0.13 TCGA-EE-A29D-06 7 107399489 107399489 G A CBLL1 Missense_Mutation p.G448R 0.42 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A29D-06 7 107406217 107406217 G A SLC26A3 3'UTR 0.46 TCGA-EE-A29D-06 7 107576049 107576049 C T LAMB1 Silent p.E1333E 0.17 TCGA-EE-A29D-06 7 107732842 107732842 C T LAMB4 Missense_Mutation p.G497E 0.34 tolerated(0.56) benign(0.045) TCGA-EE-A29D-06 7 107872917 107872917 G A NRCAM Silent p.L94L 0.35 TCGA-EE-A29D-06 7 11076123 11076123 C T PHF14 Missense_Mutation p.P561S 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 7 11445951 11445951 C T THSD7A Missense_Mutation p.E1405K 0.40 tolerated(0.25) benign(0.013) TCGA-EE-A29D-06 7 115580660 115580660 G A TFEC Missense_Mutation p.S330F 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 11633007 11633007 G A THSD7A Missense_Mutation p.P382L 0.10 tolerated(0.17) benign(0.038) TCGA-EE-A29D-06 7 11633061 11633061 G A THSD7A Missense_Mutation p.S364F 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 7 116414988 116414988 C T MET Silent p.L1046L 0.46 TCGA-EE-A29D-06 7 117199657 117199657 C T CFTR Missense_Mutation p.S511F 0.36 deleterious(0.03) benign(0.025) TCGA-EE-A29D-06 7 119915115 119915115 G A KCND2 Silent p.E143E 0.52 TCGA-EE-A29D-06 7 120782129 120782129 C T CPED1 Silent p.T663T 0.28 TCGA-EE-A29D-06 7 120906827 120906827 C T CPED1 Silent p.S866S 0.24 TCGA-EE-A29D-06 7 120979129 120979129 A T WNT16 Missense_Mutation p.K276N 0.35 deleterious(0.01) benign(0.367) TCGA-EE-A29D-06 7 121680940 121680940 G A PTPRZ1 Missense_Mutation p.G1903E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 7 122111485 122111485 G A CADPS2 Silent p.D710D 0.34 TCGA-EE-A29D-06 7 122635697 122635697 T C TAS2R16 5'UTR 0.44 TCGA-EE-A29D-06 7 123152385 123152385 G A IQUB Nonsense_Mutation p.Q4* 0.16 TCGA-EE-A29D-06 7 126542724 126542724 C T GRM8 Missense_Mutation p.R343Q 0.34 tolerated(0.58) possibly_damaging(0.716) TCGA-EE-A29D-06 7 126882982 126882982 G A GRM8 Missense_Mutation p.L93F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 7 128317745 128317745 C T FAM71F2 Nonsense_Mutation p.Q165* 0.39 TCGA-EE-A29D-06 7 128480142 128480142 G A FLNC Missense_Mutation p.E493K 0.44 tolerated(0.08) probably_damaging(0.95) TCGA-EE-A29D-06 7 128493530 128493530 G A FLNC Silent p.G2072G 0.23 TCGA-EE-A29D-06 7 128585918 128585918 G A IRF5 Missense_Mutation p.G72E 0.30 deleterious(0) possibly_damaging(0.598) TCGA-EE-A29D-06 7 129093175 129093175 C T STRIP2 Missense_Mutation p.H173Y 0.33 tolerated(0.37) possibly_damaging(0.53) TCGA-EE-A29D-06 7 129592462 129592462 G A UBE2H 5'UTR 0.13 TCGA-EE-A29D-06 7 131844238 131844238 C T PLXNA4 Missense_Mutation p.D1552N 0.25 deleterious(0) probably_damaging(0.975) TCGA-EE-A29D-06 7 131844299 131844299 C T PLXNA4 Silent p.K1531K 0.39 TCGA-EE-A29D-06 7 134894380 134894381 - T WDR91 Frame_Shift_Ins p.I84Nfs*23 0.27 TCGA-EE-A29D-06 7 137255924 137255924 A G DGKI Silent p.S648S 0.62 TCGA-EE-A29D-06 7 137761224 137761224 C T AKR1D1 5'UTR 0.58 TCGA-EE-A29D-06 7 137776624 137776624 C T AKR1D1 Silent p.A124A 0.16 TCGA-EE-A29D-06 7 138447681 138447681 C T ATP6V0A4 Silent p.L127L 0.21 TCGA-EE-A29D-06 7 138453967 138453967 C T ATP6V0A4 Silent p.R49R 0.37 TCGA-EE-A29D-06 7 138487709 138487709 C T TMEM213 Silent p.I73I 0.28 TCGA-EE-A29D-06 7 138545921 138545921 G A KIAA1549 Silent p.F1737F 0.36 TCGA-EE-A29D-06 7 138546119 138546119 G A KIAA1549 Silent p.S1671S 0.38 TCGA-EE-A29D-06 7 138579238 138579238 G A KIAA1549 Silent p.S1294S 0.28 TCGA-EE-A29D-06 7 138601855 138601855 G A KIAA1549 Silent p.I839I 0.52 TCGA-EE-A29D-06 7 140223218 140223218 C T DENND2A Missense_Mutation p.D852N 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 7 140301675 140301675 C T DENND2A Missense_Mutation p.A175T 0.44 tolerated(0.12) benign(0.206) TCGA-EE-A29D-06 7 141429444 141429444 G A WEE2 Missense_Mutation p.G550E 0.30 tolerated(0.11) benign(0.128) TCGA-EE-A29D-06 7 141463992 141463992 C T TAS2R3 Silent p.L12L 0.24 TCGA-EE-A29D-06 7 141537046 141537046 G A PRSS37 Nonsense_Mutation p.R145* 0.47 TCGA-EE-A29D-06 7 141618825 141618825 G A OR9A4 Silent p.V50V 0.20 TCGA-EE-A29D-06 7 141672872 141672872 G A TAS2R38 Silent p.F206F 0.29 TCGA-EE-A29D-06 7 141727502 141727502 C T MGAM Silent p.V396V 0.64 TCGA-EE-A29D-06 7 141730444 141730444 C T MGAM Missense_Mutation p.P453S 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 7 141736632 141736632 C T MGAM Missense_Mutation p.P696S 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 7 141750635 141750635 C T MGAM Missense_Mutation p.P926S 0.31 tolerated(0.57) benign(0.007) TCGA-EE-A29D-06 7 141752589 141752589 C T MGAM Silent p.S988S 0.52 TCGA-EE-A29D-06 7 141758086 141758086 C T MGAM Silent p.I1259I 0.39 TCGA-EE-A29D-06 7 141796141 141796141 G A MGAM Missense_Mutation p.D1644N 0.61 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29D-06 7 141799449 141799449 T A MGAM Missense_Mutation p.L1700M 0.57 tolerated(0.17) possibly_damaging(0.599) TCGA-EE-A29D-06 7 141952185 141952185 A T PRSS58 Silent p.V194V 0.44 TCGA-EE-A29D-06 7 141955432 141955432 C T PRSS58 Silent p.L34L 0.47 TCGA-EE-A29D-06 7 142000977 142000977 C T TRBV2 5'UTR 0.43 TCGA-EE-A29D-06 7 142021070 142021070 G A TRBV5-1 Missense_Mutation p.G17D 0.19 tolerated(0.2) benign(0.417) TCGA-EE-A29D-06 7 142099598 142099598 G A TRBV7-8 Silent p.F68F 0.19 TCGA-EE-A29D-06 7 142139758 142139758 G A TRBV7-6 Missense_Mutation p.L5F 0.36 tolerated(0.09) benign(0.105) TCGA-EE-A29D-06 7 142143909 142143909 G A TRBV6-7 Silent p.F29F 0.17 TCGA-EE-A29D-06 7 142168486 142168486 G A TRBV5-4 Silent p.F79F 0.50 TCGA-EE-A29D-06 7 142168838 142168838 G A TRBV5-4 Missense_Mutation p.P3S 0.23 tolerated(1) probably_damaging(0.999) TCGA-EE-A29D-06 7 142247269 142247269 C T TRBV7-3 Missense_Mutation p.E63K 0.27 TCGA-EE-A29D-06 7 142458423 142458423 G A PRSS1 Missense_Mutation p.D20N 0.22 tolerated(0.12) benign(0.033) TCGA-EE-A29D-06 7 142479926 142479926 G A PRSS3P2 RNA 0.40 TCGA-EE-A29D-06 7 142572875 142572875 C T TRPV6 Missense_Mutation p.E389K 0.38 deleterious(0) probably_damaging(0.987) TCGA-EE-A29D-06 7 142622563 142622563 C T TRPV5 Intron 0.29 TCGA-EE-A29D-06 7 142649704 142649704 C T KEL Missense_Mutation p.M365I 0.27 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A29D-06 7 142750298 142750298 C T OR6V1 Silent p.I287I 0.42 TCGA-EE-A29D-06 7 142836738 142836738 G A PIP 3'UTR 0.52 TCGA-EE-A29D-06 7 142880788 142880788 G A TAS2R39 Missense_Mutation p.E93K 0.43 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A29D-06 7 142881239 142881239 G C TAS2R39 Missense_Mutation p.G243A 0.45 deleterious(0.03) benign(0.102) TCGA-EE-A29D-06 7 142983263 142983263 G A TMEM139 Silent p.Q71Q 0.44 TCGA-EE-A29D-06 7 142983718 142983718 C T TMEM139 Silent p.S149S 0.18 TCGA-EE-A29D-06 7 143054508 143054508 C T FAM131B Missense_Mutation p.E159K 0.31 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A29D-06 7 143096351 143096351 C T EPHA1 Missense_Mutation p.G331S 0.26 deleterious(0.05) benign(0.034) TCGA-EE-A29D-06 7 143175198 143175198 G A TAS2R41 Missense_Mutation p.G78E 0.27 tolerated(0.25) benign(0.158) TCGA-EE-A29D-06 7 143453515 143453515 C T CTAGE6 Missense_Mutation p.E413K 0.12 deleterious(0.01) benign(0.206) TCGA-EE-A29D-06 7 143453536 143453536 C T CTAGE6 Missense_Mutation p.E406K 0.16 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A29D-06 7 143632663 143632663 T A OR2F2 Missense_Mutation p.V113D 0.41 deleterious(0) possibly_damaging(0.795) TCGA-EE-A29D-06 7 143657991 143657991 G A OR2F1 Missense_Mutation p.G310R 0.21 tolerated(0.09) benign(0.019) TCGA-EE-A29D-06 7 143701533 143701533 C T OR6B1 Silent p.S148S 0.45 TCGA-EE-A29D-06 7 143747551 143747551 C T OR2A5 Silent p.S19S 0.46 TCGA-EE-A29D-06 7 143806753 143806753 C T OR2A2 Silent p.L26L 0.26 TCGA-EE-A29D-06 7 143826610 143826610 G A OR2A14 Missense_Mutation p.M135I 0.24 deleterious(0.02) benign(0.213) TCGA-EE-A29D-06 7 144098195 144098195 C T NOBOX Missense_Mutation p.G263E 0.32 tolerated(0.64) benign(0.032) TCGA-EE-A29D-06 7 144288569 144288569 G A TPK1 Missense_Mutation p.P150S 0.14 tolerated(0.41) benign(0.001) TCGA-EE-A29D-06 7 14647118 14647118 G A DGKB Silent p.F459F 0.09 TCGA-EE-A29D-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.41 deleterious(0) possibly_damaging(0.466) TCGA-EE-A29D-06 7 1474290 1474290 G A MICALL2 Missense_Mutation p.S886F 0.10 deleterious(0.02) possibly_damaging(0.885) TCGA-EE-A29D-06 7 148702420 148702420 G A PDIA4 Silent p.F445F 0.26 TCGA-EE-A29D-06 7 14880876 14880876 C T DGKB Missense_Mutation p.E5K 0.71 tolerated(0.58) benign(0.15) TCGA-EE-A29D-06 7 148963745 148963745 A T ZNF783 Missense_Mutation p.N115I 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 149467602 149467602 G A ZNF467 Silent p.P26P 0.59 TCGA-EE-A29D-06 7 149489749 149489749 G A SSPO RNA 0.31 TCGA-EE-A29D-06 7 149493597 149493597 G A SSPO RNA 0.21 TCGA-EE-A29D-06 7 149500612 149500612 C T SSPO RNA 0.39 TCGA-EE-A29D-06 7 149506157 149506157 C T SSPO RNA 0.83 TCGA-EE-A29D-06 7 149524869 149524869 G A SSPO RNA 0.21 TCGA-EE-A29D-06 7 150164104 150164104 C T GIMAP8 Silent p.F106F 0.47 TCGA-EE-A29D-06 7 150325038 150325038 C T GIMAP6 Missense_Mutation p.M216I 0.26 tolerated(0.07) possibly_damaging(0.461) TCGA-EE-A29D-06 7 150325593 150325593 C T GIMAP6 Silent p.R31R 0.26 TCGA-EE-A29D-06 7 150390043 150390043 G A GIMAP2 Silent p.Q223Q 0.31 TCGA-EE-A29D-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.54 tolerated(1) benign(0.001) TCGA-EE-A29D-06 7 150554810 150554810 C T AOC1 Missense_Mutation p.L418F 0.29 deleterious(0) possibly_damaging(0.884) TCGA-EE-A29D-06 7 150698983 150698983 C T NOS3 Missense_Mutation p.S526F 0.33 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A29D-06 7 150720253 150720253 G A ATG9B Nonsense_Mutation p.R234* 0.29 TCGA-EE-A29D-06 7 151716746 151716746 C T GALNTL5 Nonsense_Mutation p.R398* 0.37 TCGA-EE-A29D-06 7 151970798 151970798 G A KMT2C Missense_Mutation p.P335L 0.05 probably_damaging(0.999) TCGA-EE-A29D-06 7 151970883 151970883 G A KMT2C Missense_Mutation p.H307Y 0.07 probably_damaging(0.999) TCGA-EE-A29D-06 7 152551575 152551575 G A ACTR3B Silent p.K398K 0.19 TCGA-EE-A29D-06 7 154429576 154429576 C T DPP6 Missense_Mutation p.P225S 0.33 tolerated(0.73) benign(0.333) TCGA-EE-A29D-06 7 154645528 154645528 G A DPP6 Missense_Mutation p.D569N 0.36 tolerated(0.44) benign(0.002) TCGA-EE-A29D-06 7 154684252 154684252 C T DPP6 3'UTR 0.40 TCGA-EE-A29D-06 7 154684412 154684412 C T DPP6 3'UTR 0.35 TCGA-EE-A29D-06 7 157930989 157930989 G A PTPRN2 Missense_Mutation p.P377S 0.48 tolerated(0.24) benign(0.057) TCGA-EE-A29D-06 7 18633627 18633627 G A HDAC9 Silent p.K213K 0.15 TCGA-EE-A29D-06 7 18705938 18705938 C T HDAC9 Missense_Mutation p.P524S 0.17 tolerated(0.2) benign(0.023) TCGA-EE-A29D-06 7 18788706 18788706 G A HDAC9 Missense_Mutation p.R663Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 7 20698150 20698150 G A ABCB5 Missense_Mutation p.E520K 0.79 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A29D-06 7 20739682 20739682 G A ABCB5 Missense_Mutation p.G754E 0.21 deleterious(0) probably_damaging(0.954) TCGA-EE-A29D-06 7 20762657 20762657 G A ABCB5 Missense_Mutation p.G814S 0.10 tolerated(0.05) possibly_damaging(0.868) TCGA-EE-A29D-06 7 20766725 20766725 C T ABCB5 Silent p.F896F 0.29 TCGA-EE-A29D-06 7 20793112 20793112 G A ABCB5 Missense_Mutation p.D1187N 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 20825373 20825373 G A SP8 Silent p.A21A 0.38 TCGA-EE-A29D-06 7 21627698 21627698 G A DNAH11 Missense_Mutation p.G576E 0.48 probably_damaging(0.939) TCGA-EE-A29D-06 7 21641176 21641176 G A DNAH11 Silent p.T1196T 0.20 TCGA-EE-A29D-06 7 21698479 21698479 G A DNAH11 Missense_Mutation p.E1725K 0.23 benign(0.036) TCGA-EE-A29D-06 7 21818633 21818633 C T DNAH11 Missense_Mutation p.H3139Y 0.66 benign(0.212) TCGA-EE-A29D-06 7 21856132 21856132 G A DNAH11 Silent p.T3467T 0.33 TCGA-EE-A29D-06 7 21908575 21908575 A T DNAH11 Missense_Mutation p.K3985I 0.30 benign(0.059) TCGA-EE-A29D-06 7 2409304 2409304 C T EIF3B Missense_Mutation p.P534L 0.37 tolerated(0.2) benign(0.366) TCGA-EE-A29D-06 7 24690159 24690159 G A MPP6 Missense_Mutation p.G160E 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 7 24846501 24846501 C T OSBPL3 Missense_Mutation p.E780K 0.07 deleterious(0.02) possibly_damaging(0.523) TCGA-EE-A29D-06 7 24880359 24880359 A T OSBPL3 Missense_Mutation p.L482H 0.32 deleterious(0.01) benign(0.345) TCGA-EE-A29D-06 7 25176300 25176300 G A C7orf31 Missense_Mutation p.S355F 0.11 tolerated(0.19) possibly_damaging(0.748) TCGA-EE-A29D-06 7 27204695 27204695 G A HOXA9 Missense_Mutation p.R128W 0.15 deleterious(0) possibly_damaging(0.742) TCGA-EE-A29D-06 7 27222489 27222489 G A HOXA11 Nonsense_Mutation p.Q290* 0.65 TCGA-EE-A29D-06 7 27671959 27671959 G A HIBADH Silent p.L120L 0.29 TCGA-EE-A29D-06 7 2953033 2953033 G A CARD11 Silent p.F969F 0.13 TCGA-EE-A29D-06 7 2969694 2969694 C T CARD11 Missense_Mutation p.E529K 0.26 tolerated(0.42) benign(0.021) TCGA-EE-A29D-06 7 29983653 29983653 G A SCRN1 Missense_Mutation p.R182C 0.59 deleterious(0.03) benign(0.08) TCGA-EE-A29D-06 7 30168910 30168910 C T PLEKHA8 3'UTR 0.65 TCGA-EE-A29D-06 7 30931614 30931614 C T FAM188B Silent p.I756I 0.65 TCGA-EE-A29D-06 7 31014622 31014622 G A GHRHR Nonsense_Mutation p.W283* 0.37 TCGA-EE-A29D-06 7 31124435 31124435 C T ADCYAP1R1 Silent p.I174I 0.22 TCGA-EE-A29D-06 7 31617891 31617891 C T CCDC129 Missense_Mutation p.P364L 0.11 tolerated(0.28) benign(0.057) TCGA-EE-A29D-06 7 34182945 34182945 C T BMPER Missense_Mutation p.H617Y 0.42 tolerated(0.77) possibly_damaging(0.544) TCGA-EE-A29D-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.27 TCGA-EE-A29D-06 7 36580012 36580012 G A AOAH Silent p.L407L 0.23 TCGA-EE-A29D-06 7 36917628 36917628 G A ELMO1 Silent p.S603S 0.08 TCGA-EE-A29D-06 7 37780319 37780319 G A GPR141 Silent p.V108V 0.66 TCGA-EE-A29D-06 7 37951818 37951818 G A SFRP4 Nonsense_Mutation p.R232* 0.13 TCGA-EE-A29D-06 7 38725035 38725035 G A FAM183B 3'UTR 0.70 TCGA-EE-A29D-06 7 38725172 38725172 C T FAM183B 3'UTR 0.11 TCGA-EE-A29D-06 7 39491250 39491250 C T POU6F2 Missense_Mutation p.S451F 0.26 deleterious(0) unknown(0) TCGA-EE-A29D-06 7 4091446 4091446 C T SDK1 Silent p.V965V 0.39 TCGA-EE-A29D-06 7 4169671 4169671 C T SDK1 Silent p.T1357T 0.09 TCGA-EE-A29D-06 7 41729223 41729223 C T INHBA 3'UTR 0.40 TCGA-EE-A29D-06 7 43484094 43484094 C T HECW1 Silent p.L441L 0.74 TCGA-EE-A29D-06 7 43484930 43484930 C T HECW1 Missense_Mutation p.S720F 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A29D-06 7 43546829 43546829 G A HECW1 Missense_Mutation p.G1242E 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 7 44179950 44179950 G A MYL7 Silent p.F90F 0.07 TCGA-EE-A29D-06 7 44186118 44186118 G C GCK Silent p.S322S 0.63 TCGA-EE-A29D-06 7 44191960 44191960 C T GCK Silent p.V92V 0.27 TCGA-EE-A29D-06 7 44713500 44713500 G A OGDH Missense_Mutation p.E250K 0.11 deleterious(0.04) possibly_damaging(0.507) TCGA-EE-A29D-06 7 44806154 44806154 C T ZMIZ2 Silent p.G849G 0.60 TCGA-EE-A29D-06 7 47882580 47882580 G A PKD1L1 Missense_Mutation p.P1809S 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A29D-06 7 48391906 48391906 C T ABCA13 Missense_Mutation p.P3504S 0.42 probably_damaging(1) TCGA-EE-A29D-06 7 48634331 48634331 C T ABCA13 Missense_Mutation p.P4889L 0.40 probably_damaging(1) TCGA-EE-A29D-06 7 50672984 50672984 T C GRB10 Intron 0.61 TCGA-EE-A29D-06 7 5104829 5104829 C T RBAK Missense_Mutation p.S581F 0.67 tolerated(0.53) probably_damaging(0.999) TCGA-EE-A29D-06 7 51096790 51096790 G A COBL Missense_Mutation p.S668F 0.16 tolerated(0.29) possibly_damaging(0.51) TCGA-EE-A29D-06 7 53103577 53103577 G A POM121L12 Silent p.P71P 0.50 TCGA-EE-A29D-06 7 53103836 53103836 G A POM121L12 Missense_Mutation p.A158T 0.12 tolerated(0.47) benign(0.035) TCGA-EE-A29D-06 7 53103871 53103871 C T POM121L12 Silent p.L169L 0.20 TCGA-EE-A29D-06 7 53104047 53104047 C T POM121L12 Missense_Mutation p.S228F 0.31 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A29D-06 7 53104185 53104185 C T POM121L12 Missense_Mutation p.S274F 0.29 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A29D-06 7 54612430 54612430 C T VSTM2A Silent p.F65F 0.24 TCGA-EE-A29D-06 7 54636799 54636799 C T VSTM2A 3'UTR 0.17 TCGA-EE-A29D-06 7 55233016 55233016 C T EGFR Missense_Mutation p.P589L 0.39 tolerated(0.13) possibly_damaging(0.503) TCGA-EE-A29D-06 7 5568198 5568198 G A ACTB Silent p.P172P 0.31 TCGA-EE-A29D-06 7 55750512 55750512 C T RNU6-389P 5'Flank 0.52 TCGA-EE-A29D-06 7 56007289 56007289 C T ZNF713 Missense_Mutation p.H295Y 0.69 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 7 5633106 5633106 C T FSCN1 Missense_Mutation p.A180V 0.34 tolerated(1) benign(0.005) TCGA-EE-A29D-06 7 5662478 5662478 G A RNF216 3'UTR 0.09 TCGA-EE-A29D-06 7 57187747 57187747 G A ZNF479 Missense_Mutation p.H459Y 0.11 deleterious(0.03) benign(0.009) TCGA-EE-A29D-06 7 57188775 57188775 C T ZNF479 Missense_Mutation p.G116E 0.50 tolerated(1) benign(0.062) TCGA-EE-A29D-06 7 57529426 57529426 C T ZNF716 Missense_Mutation p.S420F 0.39 tolerated(0.41) benign(0.118) TCGA-EE-A29D-06 7 6006543 6006543 C T RSPH10B Missense_Mutation p.D69N 0.17 tolerated(0.07) benign(0.062) TCGA-EE-A29D-06 7 6196598 6196598 G A USP42 Silent p.L1285L 0.29 TCGA-EE-A29D-06 7 6370174 6370174 C T FAM220A Silent p.L204L 0.58 TCGA-EE-A29D-06 7 6431659 6431659 C T RAC1 Missense_Mutation p.S71F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 64388279 64388279 A G ZNF273 Silent p.S191S 0.46 TCGA-EE-A29D-06 7 66240227 66240227 G A KCTD7 Missense_Mutation p.E65K 0.54 deleterious(0.02) possibly_damaging(0.576) TCGA-EE-A29D-06 7 66296199 66296199 C T GTF2IRD1P1 RNA 0.17 TCGA-EE-A29D-06 7 66418263 66418263 C T TMEM248 Silent p.L277L 0.48 TCGA-EE-A29D-06 7 66660289 66660289 G A TYW1 Missense_Mutation p.E648K 0.70 tolerated(0.06) benign(0.233) TCGA-EE-A29D-06 7 6731530 6731530 G A ZNF12 Missense_Mutation p.S348L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 7 70231204 70231204 C T AUTS2 Missense_Mutation p.H525Y 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29D-06 7 71036349 71036349 G A WBSCR17 Missense_Mutation p.D348N 0.18 tolerated(0.19) possibly_damaging(0.829) TCGA-EE-A29D-06 7 71175907 71175907 C T WBSCR17 Silent p.F554F 0.21 TCGA-EE-A29D-06 7 71177134 71177134 G A WBSCR17 3'UTR 0.51 TCGA-EE-A29D-06 7 72412538 72412538 C T POM121 Missense_Mutation p.S404F 0.26 deleterious(0) probably_damaging(0.992) TCGA-EE-A29D-06 7 72727133 72727133 G A TRIM50 Silent p.L416L 0.62 TCGA-EE-A29D-06 7 72988772 72988772 G - TBL2 Frame_Shift_Del p.R68Gfs*19 0.16 TCGA-EE-A29D-06 7 73245952 73245952 C T CLDN4 Missense_Mutation p.H141Y 0.58 deleterious(0) benign(0.028) TCGA-EE-A29D-06 7 73458247 73458247 C T ELN Missense_Mutation p.P156S 0.41 unknown(0) TCGA-EE-A29D-06 7 73609501 73609501 G C EIF4H Missense_Mutation p.E204Q 0.13 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A29D-06 7 74103493 74103493 G A GTF2I Missense_Mutation p.V11I 0.34 tolerated(0.4) benign(0.002) TCGA-EE-A29D-06 7 74212452 74212452 G A GTF2IRD2 Nonsense_Mutation p.Q467* 0.18 TCGA-EE-A29D-06 7 74237300 74237300 G A GTF2IRD2 Missense_Mutation p.P132S 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29D-06 7 7480447 7480447 C T COL28A1 Missense_Mutation p.G566R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 75034251 75034251 G A TRIM73 Missense_Mutation p.D209N 0.68 tolerated(0.72) benign(0.011) TCGA-EE-A29D-06 7 750996 750996 G A PRKAR1B Silent p.F49F 0.12 TCGA-EE-A29D-06 7 75203172 75203172 G A HIP1 Silent p.S213S 0.23 TCGA-EE-A29D-06 7 76109952 76109952 C T DTX2 Silent p.I42I 0.31 TCGA-EE-A29D-06 7 76142439 76142439 G A UPK3B Intron 0.52 TCGA-EE-A29D-06 7 77885818 77885818 G A MAGI2 Missense_Mutation p.P497S 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 7 80303448 80303448 G A CD36 Silent p.S468S 0.44 TCGA-EE-A29D-06 7 8181422 8181422 G A ICA1 Nonsense_Mutation p.Q310* 0.14 TCGA-EE-A29D-06 7 82390765 82390765 C T PCLO Missense_Mutation p.E5018K 0.66 unknown(0) TCGA-EE-A29D-06 7 82451976 82451976 G A PCLO Missense_Mutation p.H4876Y 0.51 unknown(0) TCGA-EE-A29D-06 7 82475918 82475918 G A PCLO Missense_Mutation p.S4599F 0.31 unknown(0) TCGA-EE-A29D-06 7 82532040 82532040 C T PCLO Silent p.G4485G 0.22 TCGA-EE-A29D-06 7 82544027 82544027 G A PCLO Silent p.F4425F 0.14 TCGA-EE-A29D-06 7 82544603 82544603 C T PCLO Silent p.R4233R 0.73 TCGA-EE-A29D-06 7 82581333 82581333 G A PCLO Missense_Mutation p.S2979L 0.15 unknown(0) TCGA-EE-A29D-06 7 82583296 82583296 C T PCLO Missense_Mutation p.E2325K 0.14 unknown(0) TCGA-EE-A29D-06 7 82595107 82595107 C T PCLO Missense_Mutation p.E1333K 0.57 unknown(0) TCGA-EE-A29D-06 7 82764026 82764026 G A PCLO Missense_Mutation p.S947F 0.10 unknown(0) TCGA-EE-A29D-06 7 82764181 82764181 G A PCLO Silent p.S895S 0.55 TCGA-EE-A29D-06 7 82784273 82784273 C T PCLO Missense_Mutation p.G562R 0.52 unknown(0) TCGA-EE-A29D-06 7 82785355 82785355 C T PCLO Missense_Mutation p.G201E 0.46 unknown(0) TCGA-EE-A29D-06 7 83037700 83037700 A G SEMA3E Silent p.D218D 0.53 TCGA-EE-A29D-06 7 86394513 86394513 G A GRM3 Missense_Mutation p.G18R 0.54 tolerated(0.18) benign(0.107) TCGA-EE-A29D-06 7 86415805 86415805 G A GRM3 Missense_Mutation p.E233K 0.23 tolerated(1) probably_damaging(0.934) TCGA-EE-A29D-06 7 86415921 86415921 C T GRM3 Silent p.V271V 0.75 TCGA-EE-A29D-06 7 86468403 86468403 G A GRM3 Missense_Mutation p.D525N 0.23 tolerated(0.11) possibly_damaging(0.581) TCGA-EE-A29D-06 7 86468442 86468442 G A GRM3 Missense_Mutation p.E538K 0.50 deleterious(0.04) probably_damaging(0.946) TCGA-EE-A29D-06 7 86468681 86468681 C T GRM3 Silent p.I617I 0.19 TCGA-EE-A29D-06 7 86469047 86469047 C T GRM3 Silent p.I739I 0.39 TCGA-EE-A29D-06 7 86479781 86479781 A G GRM3 Silent p.Q829Q 0.49 TCGA-EE-A29D-06 7 87038587 87038587 G A ABCB4 Silent p.L1016L 0.22 TCGA-EE-A29D-06 7 87170679 87170679 G A ABCB1 Silent p.F771F 0.53 TCGA-EE-A29D-06 7 87173569 87173569 G A ABCB1 Missense_Mutation p.S696F 0.41 deleterious(0) possibly_damaging(0.723) TCGA-EE-A29D-06 7 87196275 87196275 C T ABCB1 Missense_Mutation p.S119N 0.42 tolerated(0.08) benign(0.392) TCGA-EE-A29D-06 7 87763712 87763712 A G ADAM22 Silent p.S382S 0.27 TCGA-EE-A29D-06 7 87778365 87778365 C T ADAM22 Missense_Mutation p.S520L 0.11 deleterious(0) possibly_damaging(0.692) TCGA-EE-A29D-06 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.15 tolerated(0.07) benign(0.032) TCGA-EE-A29D-06 7 88424122 88424122 G A C7orf62 Silent p.F45F 0.40 TCGA-EE-A29D-06 7 88965891 88965891 C T ZNF804B Missense_Mutation p.P1199S 0.64 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 7 91659268 91659268 G A AKAP9 Missense_Mutation p.G1403E 0.33 benign(0.077) TCGA-EE-A29D-06 7 92733260 92733260 C T SAMD9 Missense_Mutation p.M717I 0.18 deleterious(0.03) benign(0.007) TCGA-EE-A29D-06 7 92761009 92761009 G A SAMD9L Missense_Mutation p.P1426S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 7 92761627 92761627 C T SAMD9L Missense_Mutation p.E1220K 0.16 tolerated(1) benign(0.006) TCGA-EE-A29D-06 7 92764286 92764286 C T SAMD9L Nonsense_Mutation p.W333* 0.15 TCGA-EE-A29D-06 7 92764701 92764701 G A SAMD9L Missense_Mutation p.P195L 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 7 92764729 92764729 C T SAMD9L Missense_Mutation p.E186K 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 7 93106958 93106958 C T CALCR Nonsense_Mutation p.W94* 0.36 TCGA-EE-A29D-06 7 94049944 94049944 G A COL1A2 Missense_Mutation p.G760E 0.62 unknown(0) TCGA-EE-A29D-06 7 94539710 94539710 T A PPP1R9A Silent p.S95S 0.11 TCGA-EE-A29D-06 7 94879554 94879554 G A PPP1R9A Missense_Mutation p.D795N 0.55 deleterious(0) probably_damaging(0.991) TCGA-EE-A29D-06 7 94897975 94897975 G A PPP1R9A Missense_Mutation p.D927N 0.39 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29D-06 7 95214867 95214867 G A PDK4 3'UTR 0.51 TCGA-EE-A29D-06 7 98551047 98551047 C T TRRAP Silent p.I1900I 0.58 TCGA-EE-A29D-06 7 99274149 99274149 C T CYP3A5 Intron 0.29 TCGA-EE-A29D-06 7 99381691 99381691 G A CYP3A4 Missense_Mutation p.P5L 0.19 tolerated(0.12) benign(0.053) TCGA-EE-A29D-06 7 99445221 99445221 G A CYP3A43 Silent p.K143K 0.43 TCGA-EE-A29D-06 7 99473783 99473783 G A OR2AE1 Missense_Mutation p.R292W 0.52 deleterious(0.03) benign(0.022) TCGA-EE-A29D-06 7 99473784 99473784 G A OR2AE1 Silent p.L291L 0.52 TCGA-EE-A29D-06 7 99490094 99490094 C G TRIM4 Missense_Mutation p.E399Q 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A29D-06 7 99654906 99654906 T G ZSCAN21 Missense_Mutation p.F93V 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 8 102381223 102381223 C T NACAP1 RNA 0.24 TCGA-EE-A29D-06 8 104053027 104053027 A G ATP6V1C1 Intron 0.24 TCGA-EE-A29D-06 8 10469863 10469863 G A RP1L1 Missense_Mutation p.S582L 0.13 benign(0.077) TCGA-EE-A29D-06 8 10470384 10470384 C T RP1L1 Nonsense_Mutation p.W408* 0.37 TCGA-EE-A29D-06 8 104987692 104987692 G A RIMS2 Missense_Mutation p.G962E 0.81 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-EE-A29D-06 8 105161027 105161027 C T RIMS2 Intron 0.23 TCGA-EE-A29D-06 8 105367281 105367281 C T DCSTAMP Silent p.I402I 0.67 TCGA-EE-A29D-06 8 10555178 10555178 C T C8orf74 Missense_Mutation p.T104I 0.37 tolerated(0.13) benign(0.271) TCGA-EE-A29D-06 8 10555179 10555179 C T C8orf74 Silent p.T104T 0.38 TCGA-EE-A29D-06 8 106813294 106813294 C T ZFPM2 Silent p.F328F 0.61 TCGA-EE-A29D-06 8 106814320 106814320 G A ZFPM2 Silent p.V670V 0.26 TCGA-EE-A29D-06 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29D-06 8 106815544 106815544 G A ZFPM2 Nonsense_Mutation p.W1078* 0.43 TCGA-EE-A29D-06 8 10756221 10756221 G A XKR6 Silent p.F389F 0.30 TCGA-EE-A29D-06 8 107782406 107782406 C T ABRA Missense_Mutation p.E5K 0.38 deleterious_low_confidence(0.02) benign(0.024) TCGA-EE-A29D-06 8 109796959 109796959 C T TMEM74 Silent p.R123R 0.28 TCGA-EE-A29D-06 8 110437383 110437383 C T PKHD1L1 Missense_Mutation p.H923Y 0.33 tolerated(0.1) benign(0.055) TCGA-EE-A29D-06 8 110457590 110457590 C T PKHD1L1 Missense_Mutation p.P1831L 0.62 tolerated(0.15) benign(0.349) TCGA-EE-A29D-06 8 113236873 113236873 C T CSMD3 3'UTR 0.47 TCGA-EE-A29D-06 8 113277642 113277642 C T CSMD3 Missense_Mutation p.R3229K 0.33 tolerated(1) benign(0) TCGA-EE-A29D-06 8 113569031 113569031 C T CSMD3 Missense_Mutation p.E1399K 0.21 deleterious(0.04) probably_damaging(0.976) TCGA-EE-A29D-06 8 113694737 113694737 C T CSMD3 Missense_Mutation p.E871K 0.26 tolerated(0.08) probably_damaging(0.932) TCGA-EE-A29D-06 8 114186110 114186110 G A CSMD3 Missense_Mutation p.P184S 0.68 deleterious(0.02) benign(0.266) TCGA-EE-A29D-06 8 116426373 116426373 G A TRPS1 Missense_Mutation p.P1255S 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29D-06 8 118184905 118184905 A G SLC30A8 Silent p.E365E 0.21 TCGA-EE-A29D-06 8 121209083 121209083 G A COL14A1 Missense_Mutation p.D164N 0.21 deleterious(0.03) probably_damaging(1) TCGA-EE-A29D-06 8 121256123 121256123 G A COL14A1 Missense_Mutation p.M785I 0.24 tolerated(0.57) benign(0.006) TCGA-EE-A29D-06 8 121381701 121381701 C T COL14A1 Missense_Mutation p.S1763L 0.62 tolerated(0.12) probably_damaging(0.989) TCGA-EE-A29D-06 8 123965046 123965046 G A ZHX2 Silent p.K432K 0.26 TCGA-EE-A29D-06 8 124195299 124195299 C T FAM83A Missense_Mutation p.A68V 0.57 tolerated(0.71) benign(0.088) TCGA-EE-A29D-06 8 124219548 124219548 C T FAM83A Missense_Mutation p.P309S 0.29 tolerated(0.85) benign(0.001) TCGA-EE-A29D-06 8 126051155 126051155 G A KIAA0196 Missense_Mutation p.P1001S 0.29 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A29D-06 8 131812690 131812690 G A ADCY8 Silent p.I1014I 0.31 TCGA-EE-A29D-06 8 133192488 133192488 G A KCNQ3 Silent p.F231F 0.31 TCGA-EE-A29D-06 8 133492516 133492516 C T KCNQ3 Silent p.L88L 0.38 TCGA-EE-A29D-06 8 133650239 133650239 G A LRRC6 Missense_Mutation p.P124L 0.73 deleterious(0) probably_damaging(0.993) TCGA-EE-A29D-06 8 133650240 133650240 G A LRRC6 Missense_Mutation p.P124S 0.75 deleterious(0) probably_damaging(0.998) TCGA-EE-A29D-06 8 133829221 133829221 T C PHF20L1 Silent p.P424P 0.37 TCGA-EE-A29D-06 8 133941393 133941393 C T TG Missense_Mutation p.S1591F 0.33 deleterious(0) possibly_damaging(0.484) TCGA-EE-A29D-06 8 134050687 134050687 G A SLA 3'UTR 0.23 TCGA-EE-A29D-06 8 139144955 139144955 G A FAM135B Missense_Mutation p.H1368Y 0.37 deleterious(0) possibly_damaging(0.495) TCGA-EE-A29D-06 8 139164716 139164716 C T FAM135B Missense_Mutation p.E668K 0.21 deleterious(0.04) benign(0.223) TCGA-EE-A29D-06 8 139164857 139164857 C T FAM135B Missense_Mutation p.G621R 0.30 tolerated(0.19) benign(0.024) TCGA-EE-A29D-06 8 142228239 142228239 G A SLC45A4 Silent p.S449S 0.16 TCGA-EE-A29D-06 8 142490449 142490449 G A MROH5 3'UTR 0.47 TCGA-EE-A29D-06 8 143694440 143694440 C T ARC 3'UTR 0.80 TCGA-EE-A29D-06 8 143927900 143927900 G A GML Missense_Mutation p.G91R 0.17 tolerated(1) benign(0) TCGA-EE-A29D-06 8 143927901 143927901 G A GML Missense_Mutation p.G91E 0.17 tolerated(0.09) benign(0.001) TCGA-EE-A29D-06 8 144332511 144332511 C T ZFP41 Silent p.T166T 0.39 TCGA-EE-A29D-06 8 144621080 144621080 G A ZC3H3 Missense_Mutation p.P153S 0.29 tolerated(0.33) benign(0.015) TCGA-EE-A29D-06 8 144658649 144658649 T C NAPRT1 Silent p.L325L 0.26 TCGA-EE-A29D-06 8 144671980 144671980 G A EEF1D Missense_Mutation p.S91F 0.76 deleterious(0) probably_damaging(0.929) TCGA-EE-A29D-06 8 144733406 144733406 G A ZNF623 Missense_Mutation p.G455E 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 8 144733464 144733464 C T ZNF623 Silent p.F474F 0.24 TCGA-EE-A29D-06 8 144941023 144941023 C T EPPK1 Silent p.E2133E 0.21 TCGA-EE-A29D-06 8 144941995 144941995 C T EPPK1 Silent p.R1809R 0.42 TCGA-EE-A29D-06 8 144942577 144942577 G A EPPK1 Silent p.I1615I 0.72 TCGA-EE-A29D-06 8 144946528 144946528 C T EPPK1 Silent p.K298K 0.20 TCGA-EE-A29D-06 8 145018030 145018030 G T PLEC Intron 0.72 TCGA-EE-A29D-06 8 145095470 145095470 C T SPATC1 Silent p.V256V 0.13 TCGA-EE-A29D-06 8 145722799 145722799 C T PPP1R16A Silent p.V74V 0.24 TCGA-EE-A29D-06 8 1497620 1497620 C T DLGAP2 Missense_Mutation p.P254L 0.18 tolerated(0.14) benign(0.002) TCGA-EE-A29D-06 8 15508299 15508299 T G TUSC3 Missense_Mutation p.D134E 0.16 tolerated(0.15) possibly_damaging(0.678) TCGA-EE-A29D-06 8 15967636 15967636 G A MSR1 Silent p.A438A 0.16 TCGA-EE-A29D-06 8 15967721 15967721 C T MSR1 Missense_Mutation p.G410D 0.20 deleterious(0) probably_damaging(0.987) TCGA-EE-A29D-06 8 17055912 17055912 C T ZDHHC2 Missense_Mutation p.H156Y 0.30 deleterious(0.03) benign(0.134) TCGA-EE-A29D-06 8 17063272 17063272 C T ZDHHC2 Silent p.I195I 0.28 TCGA-EE-A29D-06 8 17417987 17417987 C T SLC7A2 Silent p.S523S 0.18 TCGA-EE-A29D-06 8 18729866 18729866 C T PSD3 Missense_Mutation p.E170K 0.56 deleterious_low_confidence(0.01) benign(0.146) TCGA-EE-A29D-06 8 20038433 20038433 C T SLC18A1 Missense_Mutation p.E15K 0.29 tolerated(0.34) benign(0.003) TCGA-EE-A29D-06 8 2044139 2044139 C T MYOM2 Silent p.S726S 0.53 TCGA-EE-A29D-06 8 2054040 2054040 G A MYOM2 Missense_Mutation p.E915K 0.26 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 8 2077157 2077157 G A MYOM2 Missense_Mutation p.G1246E 0.18 deleterious(0.01) benign(0.116) TCGA-EE-A29D-06 8 21925112 21925112 C T DMTN Silent p.I56I 0.23 TCGA-EE-A29D-06 8 21951999 21951999 G A FAM160B2 Missense_Mutation p.G32S 0.36 tolerated(0.38) benign(0.1) TCGA-EE-A29D-06 8 21958161 21958161 G A FAM160B2 Silent p.G466G 0.20 TCGA-EE-A29D-06 8 22056874 22056874 C T BMP1 Intron 0.51 TCGA-EE-A29D-06 8 22884757 22884757 G A TNFRSF10B Silent p.I275I 0.18 TCGA-EE-A29D-06 8 22960647 22960647 C T TNFRSF10C Missense_Mutation p.P5S 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.878) TCGA-EE-A29D-06 8 22960702 22960702 C T TNFRSF10C Intron 0.41 TCGA-EE-A29D-06 8 23225883 23225883 G A LOXL2 5'UTR 0.45 TCGA-EE-A29D-06 8 24178865 24178865 C T ADAM28 Intron 0.32 TCGA-EE-A29D-06 8 24256963 24256963 C T ADAMDEC1 Silent p.S329S 0.31 TCGA-EE-A29D-06 8 24298542 24298542 C T ADAM7 5'UTR 0.59 TCGA-EE-A29D-06 8 24342819 24342819 G A ADAM7 Missense_Mutation p.G302E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 8 24342868 24342868 C T ADAM7 Silent p.I318I 0.08 TCGA-EE-A29D-06 8 24350738 24350738 G A ADAM7 Missense_Mutation p.G613E 0.27 tolerated(0.23) benign(0.113) TCGA-EE-A29D-06 8 24356821 24356821 G A ADAM7 Missense_Mutation p.E639K 0.50 tolerated(0.11) benign(0.02) TCGA-EE-A29D-06 8 24811137 24811137 G A CTD-2168K21.2 5'Flank 0.55 TCGA-EE-A29D-06 8 25136116 25136116 C T DOCK5 Missense_Mutation p.P86S 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A29D-06 8 27098618 27098618 G A STMN4 Silent p.L118L 0.45 TCGA-EE-A29D-06 8 27319122 27319122 G A CHRNA2 3'UTR 0.31 TCGA-EE-A29D-06 8 27396183 27396183 T C EPHX2 Missense_Mutation p.L417S 0.29 tolerated(0.06) benign(0.374) TCGA-EE-A29D-06 8 27455667 27455667 G A CLU 3'UTR 0.31 TCGA-EE-A29D-06 8 27516389 27516389 C T SCARA3 Silent p.I234I 0.36 TCGA-EE-A29D-06 8 27779759 27779759 G A SCARA5 Missense_Mutation p.S82F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29D-06 8 2806851 2806851 C T CSMD1 Missense_Mutation p.D3458N 0.31 probably_damaging(0.998) TCGA-EE-A29D-06 8 2807782 2807782 C T CSMD1 Missense_Mutation p.E3429K 0.17 benign(0.014) TCGA-EE-A29D-06 8 2830723 2830723 C T CSMD1 Missense_Mutation p.E2947K 0.33 probably_damaging(0.986) TCGA-EE-A29D-06 8 2855558 2855558 C T CSMD1 Nonsense_Mutation p.W2784* 0.15 TCGA-EE-A29D-06 8 28821347 28821347 C T HMBOX1 5'UTR 0.42 TCGA-EE-A29D-06 8 3000143 3000143 C T CSMD1 Missense_Mutation p.E2029K 0.19 probably_damaging(0.998) TCGA-EE-A29D-06 8 30694898 30694898 C A TEX15 Missense_Mutation p.D2585Y 0.41 deleterious(0) probably_damaging(0.91) TCGA-EE-A29D-06 8 30694899 30694899 C T TEX15 Silent p.K2584K 0.39 TCGA-EE-A29D-06 8 30700699 30700699 G A TEX15 Silent p.S1945S 0.66 TCGA-EE-A29D-06 8 30700722 30700722 C T TEX15 Missense_Mutation p.D1938N 0.60 tolerated(0.22) benign(0.037) TCGA-EE-A29D-06 8 30701143 30701143 C T TEX15 Missense_Mutation p.M1797I 0.44 tolerated(0.09) possibly_damaging(0.453) TCGA-EE-A29D-06 8 30704934 30704934 C T TEX15 Missense_Mutation p.E534K 0.10 tolerated(0.18) benign(0.288) TCGA-EE-A29D-06 8 30706440 30706440 G A TEX15 Missense_Mutation p.P32S 0.36 tolerated(0.08) benign(0.357) TCGA-EE-A29D-06 8 30889494 30889494 C T PURG Missense_Mutation p.V269M 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 8 30999284 30999284 C T WRN Silent p.L1076L 0.48 TCGA-EE-A29D-06 8 31015036 31015036 C T WRN Silent p.P1324P 0.34 TCGA-EE-A29D-06 8 3141789 3141789 G A CSMD1 Silent p.L1344L 0.20 TCGA-EE-A29D-06 8 3165341 3165341 C T CSMD1 Missense_Mutation p.E1276K 0.15 possibly_damaging(0.693) TCGA-EE-A29D-06 8 3216769 3216769 G A CSMD1 Missense_Mutation p.S1070F 0.23 possibly_damaging(0.741) TCGA-EE-A29D-06 8 3245068 3245068 G A CSMD1 Silent p.P910P 0.30 TCGA-EE-A29D-06 8 3265630 3265630 C T CSMD1 Missense_Mutation p.R621Q 0.50 probably_damaging(0.946) TCGA-EE-A29D-06 8 3265685 3265685 C T CSMD1 Missense_Mutation p.E603K 0.41 probably_damaging(0.968) TCGA-EE-A29D-06 8 3326245 3326245 G A CSMD1 Missense_Mutation p.A517V 0.29 benign(0.287) TCGA-EE-A29D-06 8 35544123 35544123 T G UNC5D Missense_Mutation p.L327W 0.46 tolerated(1) possibly_damaging(0.84) TCGA-EE-A29D-06 8 35648139 35648139 G A UNC5D 3'UTR 0.19 TCGA-EE-A29D-06 8 37796275 37796275 G A GOT1L1 Silent p.I80I 0.43 TCGA-EE-A29D-06 8 39091502 39091502 C T ADAM32 Silent p.F573F 0.24 TCGA-EE-A29D-06 8 39442147 39442147 C T ADAM18 Silent p.F2F 0.15 TCGA-EE-A29D-06 8 39564383 39564383 C T ADAM18 Silent p.S659S 0.27 TCGA-EE-A29D-06 8 39604032 39604032 G A ADAM2 Silent p.F711F 0.55 TCGA-EE-A29D-06 8 39607206 39607206 C T ADAM2 Missense_Mutation p.D619N 0.30 tolerated(0.09) benign(0.007) TCGA-EE-A29D-06 8 41551491 41551491 G A ANK1 Missense_Mutation p.P1194S 0.56 deleterious(0.01) possibly_damaging(0.506) TCGA-EE-A29D-06 8 41790361 41790361 G A KAT6A Nonsense_Mutation p.Q1793* 0.56 TCGA-EE-A29D-06 8 41812901 41812901 G A KAT6A Missense_Mutation p.P504L 0.11 benign(0.049) TCGA-EE-A29D-06 8 41844996 41844996 G A KAT6A Missense_Mutation p.S229F 0.36 probably_damaging(0.998) TCGA-EE-A29D-06 8 42294575 42294575 G A SLC20A2 Silent p.L485L 0.17 TCGA-EE-A29D-06 8 42294623 42294623 G A SLC20A2 Silent p.D469D 0.21 TCGA-EE-A29D-06 8 42587570 42587570 G A CHRNB3 Missense_Mutation p.E374K 0.13 tolerated(0.63) benign(0.003) TCGA-EE-A29D-06 8 42608311 42608311 G A CHRNA6 3'UTR 0.17 TCGA-EE-A29D-06 8 48309023 48309023 C T SPIDR Missense_Mutation p.P205S 0.33 tolerated(1) benign(0.002) TCGA-EE-A29D-06 8 48614415 48614415 G A SPIDR Missense_Mutation p.D636N 0.20 deleterious(0) possibly_damaging(0.544) TCGA-EE-A29D-06 8 53452456 53452456 G A FAM150A Missense_Mutation p.S87L 0.45 deleterious(0) probably_damaging(0.974) TCGA-EE-A29D-06 8 54141904 54141904 C T OPRK1 Missense_Mutation p.D366N 0.39 tolerated(0.18) benign(0.002) TCGA-EE-A29D-06 8 54163574 54163574 G A OPRK1 Silent p.F8F 0.29 TCGA-EE-A29D-06 8 55534822 55534822 G A RP1 Missense_Mutation p.G254E 0.36 deleterious(0.05) benign(0.133) TCGA-EE-A29D-06 8 55537455 55537455 G A RP1 Missense_Mutation p.R338Q 0.20 tolerated(0.05) benign(0.278) TCGA-EE-A29D-06 8 55537569 55537569 G A RP1 Missense_Mutation p.R376Q 0.49 tolerated(0.51) benign(0.007) TCGA-EE-A29D-06 8 55538221 55538221 G A RP1 Silent p.K593K 0.46 TCGA-EE-A29D-06 8 55539695 55539695 G A RP1 Missense_Mutation p.V1085I 0.35 tolerated(0.41) benign(0.002) TCGA-EE-A29D-06 8 55542620 55542620 G A RP1 Missense_Mutation p.E2060K 0.29 tolerated(0.08) possibly_damaging(0.451) TCGA-EE-A29D-06 8 57026502 57026502 C T MOS Missense_Mutation p.E14K 0.38 tolerated(0.06) benign(0.003) TCGA-EE-A29D-06 8 57224838 57224838 C T SDR16C5 Missense_Mutation p.E115K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 8 57354437 57354437 C T PENK Silent p.K66K 0.43 TCGA-EE-A29D-06 8 57890618 57890618 C T IMPAD1 Missense_Mutation p.E213K 0.15 tolerated(0.84) benign(0.005) TCGA-EE-A29D-06 8 61778215 61778215 C T CHD7 Missense_Mutation p.S2906F 0.24 probably_damaging(0.982) TCGA-EE-A29D-06 8 62212777 62212777 G A CLVS1 Missense_Mutation p.E131K 0.20 tolerated(0.72) benign(0.098) TCGA-EE-A29D-06 8 62289243 62289243 G A CLVS1 Missense_Mutation p.G179S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 8 67803281 67803281 G A MCMDC2 Missense_Mutation p.D419N 0.72 deleterious(0) possibly_damaging(0.848) TCGA-EE-A29D-06 8 67808488 67808488 C T MCMDC2 Nonsense_Mutation p.Q455* 0.46 TCGA-EE-A29D-06 8 6794401 6794401 G A DEFA4 Silent p.L7L 0.44 TCGA-EE-A29D-06 8 68169972 68169972 G A ARFGEF1 Missense_Mutation p.P841S 0.71 tolerated(0.2) benign(0.084) TCGA-EE-A29D-06 8 68421820 68421820 G A CPA6 Missense_Mutation p.H156Y 0.59 tolerated(0.38) benign(0.008) TCGA-EE-A29D-06 8 68984743 68984743 C T PREX2 Missense_Mutation p.H503Y 0.61 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29D-06 8 69002929 69002929 G A PREX2 Silent p.R743R 0.26 TCGA-EE-A29D-06 8 69017518 69017518 C T PREX2 Intron 0.68 TCGA-EE-A29D-06 8 69021713 69021713 C T PREX2 Silent p.L1001L 0.28 TCGA-EE-A29D-06 8 69358701 69358701 G A C8orf34 Intron 0.25 TCGA-EE-A29D-06 8 70744759 70744759 G A SLCO5A1 Silent p.L50L 0.22 TCGA-EE-A29D-06 8 72211932 72211932 C T EYA1 Missense_Mutation p.G194R 0.19 deleterious(0) probably_damaging(0.974) TCGA-EE-A29D-06 8 7320269 7320269 C T SPAG11B Silent p.V58V 0.13 TCGA-EE-A29D-06 8 73850012 73850012 G A KCNB2 Missense_Mutation p.D808N 0.17 tolerated_low_confidence(0.06) probably_damaging(0.91) TCGA-EE-A29D-06 8 75227701 75227701 G A JPH1 Silent p.D178D 0.43 TCGA-EE-A29D-06 8 7680921 7680921 G A DEFB105A Missense_Mutation p.S32F 0.16 deleterious(0.03) probably_damaging(0.962) TCGA-EE-A29D-06 8 77765125 77765125 G A ZFHX4 Missense_Mutation p.D1990N 0.30 possibly_damaging(0.728) TCGA-EE-A29D-06 8 77896146 77896146 G A PEX2 Missense_Mutation p.S90F 0.23 deleterious(0.01) possibly_damaging(0.646) TCGA-EE-A29D-06 8 7808223 7808223 C T ZNF705B Missense_Mutation p.S91F 0.51 tolerated(0.54) benign(0.403) TCGA-EE-A29D-06 8 81412130 81412130 C T ZBTB10 Silent p.F458F 0.34 TCGA-EE-A29D-06 8 8175897 8175897 G A SGK223 Missense_Mutation p.R1330C 0.31 probably_damaging(0.99) TCGA-EE-A29D-06 8 85441753 85441753 G A RALYL Missense_Mutation p.R79Q 0.38 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29D-06 8 86048156 86048159 AGGA GGG LRRCC1 Frame_Shift_Del p.R763Gfs*18 0.21 TCGA-EE-A29D-06 8 86115413 86115413 G A E2F5 Silent p.K143K 0.82 TCGA-EE-A29D-06 8 86253848 86253848 C T CA1 Nonsense_Mutation p.W6* 0.16 TCGA-EE-A29D-06 8 86389397 86389397 G A CA2 Missense_Mutation p.E186K 0.61 tolerated(0.98) benign(0.002) TCGA-EE-A29D-06 8 87151852 87151852 G A ATP6V0D2 Missense_Mutation p.E157K 0.63 deleterious(0) probably_damaging(0.934) TCGA-EE-A29D-06 8 87591016 87591016 C T CNGB3 Silent p.P668P 0.37 TCGA-EE-A29D-06 8 87655989 87655989 C T CNGB3 Missense_Mutation p.E390K 0.25 tolerated(0.48) benign(0.058) TCGA-EE-A29D-06 8 88885876 88885876 C T DCAF4L2 Silent p.T108T 0.31 TCGA-EE-A29D-06 8 91937813 91937813 G A NECAB1 Missense_Mutation p.R182Q 0.53 deleterious(0.01) possibly_damaging(0.478) TCGA-EE-A29D-06 8 92988151 92988151 C T RUNX1T1 Missense_Mutation p.E455K 0.26 deleterious(0) possibly_damaging(0.821) TCGA-EE-A29D-06 8 94934858 94934858 C T PDP1 Nonsense_Mutation p.Q216* 0.67 TCGA-EE-A29D-06 8 95186195 95186195 G A CDH17 Missense_Mutation p.P205S 0.18 tolerated(0.27) benign(0.034) TCGA-EE-A29D-06 8 95272458 95272458 C T GEM Missense_Mutation p.A92T 0.40 deleterious(0) possibly_damaging(0.612) TCGA-EE-A29D-06 8 95384481 95384481 G A RAD54B Missense_Mutation p.L884F 0.32 tolerated(0.46) benign(0.018) TCGA-EE-A29D-06 8 95390826 95390826 G A RAD54B Missense_Mutation p.P762S 0.18 tolerated(0.69) benign(0.004) TCGA-EE-A29D-06 8 95524276 95524276 G A KIAA1429 Silent p.T931T 0.49 TCGA-EE-A29D-06 8 99961429 99961429 C T OSR2 Silent p.F83F 0.64 TCGA-EE-A29D-06 9 100890913 100890913 G A CORO2A Silent p.P352P 0.83 TCGA-EE-A29D-06 9 100919812 100919812 T C CORO2A Missense_Mutation p.N44S 0.97 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 9 104303238 104303238 C T RNF20 Silent p.S203S 0.85 TCGA-EE-A29D-06 9 104385666 104385666 C T GRIN3A Missense_Mutation p.D850N 0.32 tolerated(0.19) probably_damaging(0.966) TCGA-EE-A29D-06 9 104449448 104449448 G A GRIN3A Missense_Mutation p.S245L 0.83 deleterious(0.01) benign(0.231) TCGA-EE-A29D-06 9 1057090 1057090 G A DMRT2 Silent p.K501K 0.93 TCGA-EE-A29D-06 9 105767323 105767323 G A CYLC2 Missense_Mutation p.G137E 0.45 tolerated(1) benign(0) TCGA-EE-A29D-06 9 105767744 105767744 C T CYLC2 Silent p.P277P 0.41 TCGA-EE-A29D-06 9 107267343 107267343 C T OR13F1 Missense_Mutation p.S267L 0.38 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A29D-06 9 107564426 107564426 G A ABCA1 Missense_Mutation p.S1536F 0.46 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 9 112005938 112005938 G A EPB41L4B Missense_Mutation p.P457S 0.76 tolerated(0.14) benign(0.007) TCGA-EE-A29D-06 9 113208295 113208295 C T SVEP1 Missense_Mutation p.D1429N 0.90 benign(0.033) TCGA-EE-A29D-06 9 113212422 113212422 G A SVEP1 Silent p.T1340T 0.88 TCGA-EE-A29D-06 9 113562829 113562829 G A MUSK Missense_Mutation p.R724Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 9 116184837 116184837 G A C9orf43 Missense_Mutation p.G152E 0.62 tolerated(0.71) benign(0.058) TCGA-EE-A29D-06 9 116812003 116812003 C T ZNF618 Silent p.I714I 0.54 TCGA-EE-A29D-06 9 117087361 117087361 G A ORM1 Missense_Mutation p.G157R 0.45 tolerated(0.56) benign(0.018) TCGA-EE-A29D-06 9 117168952 117168952 G A DFNB31 Missense_Mutation p.S640F 0.90 tolerated(0.32) benign(0.396) TCGA-EE-A29D-06 9 117783432 117783432 G A TNC 3'UTR 0.32 TCGA-EE-A29D-06 9 118949435 118949435 C T PAPPA Silent p.L140L 0.93 TCGA-EE-A29D-06 9 118982318 118982318 C T PAPPA Missense_Mutation p.P674L 0.43 deleterious(0.04) possibly_damaging(0.713) TCGA-EE-A29D-06 9 119770442 119770442 G A ASTN2 Missense_Mutation p.S456F 0.53 deleterious(0) unknown(0) TCGA-EE-A29D-06 9 120053608 120053608 C T ASTN2 Silent p.V209V 0.46 TCGA-EE-A29D-06 9 120476488 120476488 G A TLR4 Silent p.K694K 0.89 TCGA-EE-A29D-06 9 120476800 120476800 G A TLR4 Silent p.E798E 0.32 TCGA-EE-A29D-06 9 121929979 121929979 C T BRINP1 Missense_Mutation p.D557N 0.93 deleterious(0) probably_damaging(0.956) TCGA-EE-A29D-06 9 121930184 121930184 C T BRINP1 Silent p.L488L 0.56 TCGA-EE-A29D-06 9 124535720 124535720 C T DAB2IP Silent p.S943S 0.40 TCGA-EE-A29D-06 9 124751570 124751570 G A TTLL11 Silent p.S481S 0.40 TCGA-EE-A29D-06 9 124962308 124962308 G A MORN5 3'UTR 0.88 TCGA-EE-A29D-06 9 125273161 125273161 C T OR1J2 Silent p.F27F 0.43 TCGA-EE-A29D-06 9 125288700 125288700 C T OR1N1 Silent p.R291R 0.46 TCGA-EE-A29D-06 9 125330655 125330655 G A OR1L8 Silent p.I34I 0.36 TCGA-EE-A29D-06 9 125486746 125486746 C T OR1L4 Missense_Mutation p.R160C 0.76 deleterious(0) possibly_damaging(0.893) TCGA-EE-A29D-06 9 126132958 126132958 C T CRB2 Silent p.A542A 0.94 TCGA-EE-A29D-06 9 126132959 126132959 C T CRB2 Missense_Mutation p.R543W 0.94 deleterious(0.05) possibly_damaging(0.898) TCGA-EE-A29D-06 9 128434603 128434603 G A MAPKAP1 Missense_Mutation p.S84L 0.28 deleterious(0) probably_damaging(0.983) TCGA-EE-A29D-06 9 130269112 130269112 G A FAM129B 3'UTR 0.35 TCGA-EE-A29D-06 9 131038503 131038503 G A SWI5 Missense_Mutation p.E27K 0.41 tolerated_low_confidence(0.74) benign(0.01) TCGA-EE-A29D-06 9 131339676 131339676 C T SPTAN1 Missense_Mutation p.P326S 0.86 tolerated(0.05) possibly_damaging(0.493) TCGA-EE-A29D-06 9 131669450 131669450 C T LRRC8A Missense_Mutation p.P3S 0.96 tolerated(0.15) probably_damaging(0.995) TCGA-EE-A29D-06 9 131804710 131804710 T C FAM73B Missense_Mutation p.V75A 0.29 tolerated(0.83) benign(0.002) TCGA-EE-A29D-06 9 132396539 132396539 C T NTMT1 Silent p.T123T 0.44 TCGA-EE-A29D-06 9 135374956 135374956 C T C9orf171 Missense_Mutation p.P201S 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 9 135977931 135977931 G A RALGDS Silent p.P647P 0.22 TCGA-EE-A29D-06 9 136259533 136259533 G A C9orf96 Missense_Mutation p.M233I 0.53 tolerated(0.1) benign(0.006) TCGA-EE-A29D-06 9 136341396 136341396 G A SLC2A6 Silent p.L175L 0.94 TCGA-EE-A29D-06 9 136384016 136384016 G A TMEM8C Missense_Mutation p.L127F 0.31 tolerated(0.35) benign(0.109) TCGA-EE-A29D-06 9 136523445 136523445 G A DBH Nonsense_Mutation p.W577* 0.25 TCGA-EE-A29D-06 9 137313574 137313574 C T RXRA Missense_Mutation p.T278I 0.31 deleterious(0.02) possibly_damaging(0.754) TCGA-EE-A29D-06 9 137630654 137630654 G A COL5A1 Silent p.R498R 0.96 TCGA-EE-A29D-06 9 137696875 137696875 G A COL5A1 Missense_Mutation p.G1057S 0.93 unknown(0) TCGA-EE-A29D-06 9 137696876 137696876 G A COL5A1 Missense_Mutation p.G1057D 0.93 unknown(0) TCGA-EE-A29D-06 9 137703188 137703188 C T COL5A1 Missense_Mutation p.P1178S 0.35 unknown(0) TCGA-EE-A29D-06 9 138516219 138516219 C T GLT6D1 Silent p.E185E 0.50 TCGA-EE-A29D-06 9 138516287 138516287 G A GLT6D1 Nonsense_Mutation p.Q163* 0.50 TCGA-EE-A29D-06 9 138557709 138557709 C T LCN9 Missense_Mutation p.P160S 0.40 tolerated(0.44) benign(0.062) TCGA-EE-A29D-06 9 138712877 138712877 G A CAMSAP1 Silent p.S1210S 0.90 TCGA-EE-A29D-06 9 138713478 138713478 G A CAMSAP1 Missense_Mutation p.T1010I 0.25 tolerated(0.28) benign(0.058) TCGA-EE-A29D-06 9 138714533 138714533 G A CAMSAP1 Silent p.F658F 0.42 TCGA-EE-A29D-06 9 139113660 139113660 G A QSOX2 Missense_Mutation p.S268L 0.90 deleterious(0.02) benign(0.051) TCGA-EE-A29D-06 9 139368623 139368623 G A SEC16A Missense_Mutation p.P1149S 0.26 tolerated(0.4) benign(0.046) TCGA-EE-A29D-06 9 139651584 139651584 C T LCN8 Missense_Mutation p.D21N 0.27 tolerated(0.51) benign(0.002) TCGA-EE-A29D-06 9 139835912 139835912 G A FBXW5 Silent p.Y416Y 0.26 TCGA-EE-A29D-06 9 139904235 139904235 C T ABCA2 Missense_Mutation p.A2206T 0.52 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A29D-06 9 139945407 139945407 G A ENTPD2 Missense_Mutation p.L241F 0.85 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 9 139995980 139995980 C T MAN1B1 Silent p.S370S 0.50 TCGA-EE-A29D-06 9 140115071 140115071 G A RNF208 Silent p.D198D 0.44 TCGA-EE-A29D-06 9 140450030 140450030 C T DPH7 Nonsense_Mutation p.W340* 0.38 TCGA-EE-A29D-06 9 140611623 140611623 G A EHMT1 Missense_Mutation p.V211I 0.42 tolerated_low_confidence(0.55) benign(0.001) TCGA-EE-A29D-06 9 140772572 140772572 C T CACNA1B Missense_Mutation p.P63S 0.23 deleterious(0.01) benign(0.024) TCGA-EE-A29D-06 9 140772573 140772573 C T CACNA1B Missense_Mutation p.P63L 0.24 deleterious(0) benign(0.1) TCGA-EE-A29D-06 9 140846732 140846732 G A CACNA1B Missense_Mutation p.D325N 0.27 deleterious(0.02) benign(0.177) TCGA-EE-A29D-06 9 140941380 140941380 C T CACNA1B Silent p.I1146I 0.29 TCGA-EE-A29D-06 9 14746951 14746951 G A FREM1 Silent p.I2036I 0.32 TCGA-EE-A29D-06 9 14823163 14823163 G A FREM1 Missense_Mutation p.P778S 0.52 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 9 16436260 16436260 C T BNC2 Silent p.K644K 0.46 TCGA-EE-A29D-06 9 18927966 18927966 G A FAM154A 3'UTR 0.44 TCGA-EE-A29D-06 9 2076235 2076235 G A SMARCA2 Missense_Mutation p.E648K 0.39 benign(0.292) TCGA-EE-A29D-06 9 21011630 21011630 T C PTPLAD2 Missense_Mutation p.T150A 0.65 deleterious(0) possibly_damaging(0.78) TCGA-EE-A29D-06 9 21217127 21217127 C T IFNA16 Missense_Mutation p.G60R 0.33 tolerated(0.52) benign(0.029) TCGA-EE-A29D-06 9 23701585 23701585 C T ELAVL2 Missense_Mutation p.G169R 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A29D-06 9 26842533 26842533 G C CAAP1 Silent p.V284V 0.83 TCGA-EE-A29D-06 9 27949635 27949635 C T LINGO2 Silent p.R345R 0.79 TCGA-EE-A29D-06 9 27950504 27950504 G A LINGO2 Missense_Mutation p.P56S 0.40 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A29D-06 9 32407274 32407274 C T ACO1 Missense_Mutation p.S38L 0.79 deleterious(0) possibly_damaging(0.755) TCGA-EE-A29D-06 9 32572893 32572893 G A NDUFB6 Missense_Mutation p.P56S 0.83 tolerated(0.49) benign(0.081) TCGA-EE-A29D-06 9 32630579 32630579 C T TAF1L Missense_Mutation p.D1667N 0.44 deleterious_low_confidence(0.03) benign(0.14) TCGA-EE-A29D-06 9 32633270 32633270 G A TAF1L Missense_Mutation p.P770S 0.37 deleterious(0) probably_damaging(0.958) TCGA-EE-A29D-06 9 32633764 32633764 C T TAF1L Missense_Mutation p.G605E 0.54 deleterious(0) possibly_damaging(0.9) TCGA-EE-A29D-06 9 35105349 35105349 G A FAM214B Missense_Mutation p.R496C 0.88 deleterious(0) probably_damaging(0.938) TCGA-EE-A29D-06 9 35800143 35800143 G A NPR2 Missense_Mutation p.R371Q 0.44 deleterious(0.02) possibly_damaging(0.818) TCGA-EE-A29D-06 9 36170244 36170244 C T CCIN Missense_Mutation p.H249Y 0.88 tolerated(0.42) benign(0.127) TCGA-EE-A29D-06 9 37493678 37493678 C T POLR1E Silent p.I175I 0.26 TCGA-EE-A29D-06 9 37729769 37729769 C T FRMPD1 Silent p.I219I 0.83 TCGA-EE-A29D-06 9 37744537 37744537 G A FRMPD1 Silent p.R836R 0.96 TCGA-EE-A29D-06 9 37746727 37746727 C T FRMPD1 Silent p.F1566F 0.21 TCGA-EE-A29D-06 9 39140590 39140590 G A CNTNAP3 Missense_Mutation p.P601L 0.90 deleterious(0.01) benign(0.001) TCGA-EE-A29D-06 9 39171503 39171503 C T CNTNAP3 Missense_Mutation p.R399Q 0.36 deleterious(0.03) possibly_damaging(0.788) TCGA-EE-A29D-06 9 3937095 3937095 G A GLIS3 Missense_Mutation p.P602L 0.86 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 9 42368545 42368545 G A ANKRD20A2 Missense_Mutation p.G44D 0.31 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 9 5557717 5557717 G A PDCD1LG2 Missense_Mutation p.R244K 0.39 tolerated(0.22) benign(0.109) TCGA-EE-A29D-06 9 5920789 5920789 A G KIAA2026 Missense_Mutation p.L1736S 0.87 deleterious(0) possibly_damaging(0.767) TCGA-EE-A29D-06 9 6015474 6015474 G A RANBP6 Missense_Mutation p.P45L 0.38 deleterious(0.04) benign(0.35) TCGA-EE-A29D-06 9 6329072 6329072 G A TPD52L3 3'UTR 0.82 TCGA-EE-A29D-06 9 72003127 72003127 C A FAM189A2 Missense_Mutation p.L304M 0.46 deleterious(0.03) possibly_damaging(0.541) TCGA-EE-A29D-06 9 73736187 73736187 C T TRPM3 Silent p.G28G 0.40 TCGA-EE-A29D-06 9 75407221 75407221 C T TMC1 Missense_Mutation p.P507S 0.81 deleterious(0.04) possibly_damaging(0.78) TCGA-EE-A29D-06 9 77400841 77400841 G A TRPM6 Silent p.F956F 0.90 TCGA-EE-A29D-06 9 77415286 77415286 G A TRPM6 Missense_Mutation p.L708F 0.74 deleterious(0.02) probably_damaging(1) TCGA-EE-A29D-06 9 77415316 77415316 C T TRPM6 Missense_Mutation p.E698K 0.77 deleterious(0.01) benign(0.259) TCGA-EE-A29D-06 9 77442756 77442756 C T TRPM6 Missense_Mutation p.G260E 0.42 deleterious(0.01) benign(0.327) TCGA-EE-A29D-06 9 77457117 77457117 T A TRPM6 Missense_Mutation p.N99Y 0.82 deleterious(0) possibly_damaging(0.839) TCGA-EE-A29D-06 9 77457119 77457119 A T TRPM6 Missense_Mutation p.I98N 0.83 deleterious(0) probably_damaging(0.921) TCGA-EE-A29D-06 9 78848477 78848477 G A PCSK5 Missense_Mutation p.G944E 0.83 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 9 78969007 78969007 G A PCSK5 Missense_Mutation p.G1682E 0.33 deleterious(0) probably_damaging(0.943) TCGA-EE-A29D-06 9 79002245 79002245 G A RFK 3'UTR 0.66 TCGA-EE-A29D-06 9 79322150 79322150 G A PRUNE2 Silent p.V1680V 0.34 TCGA-EE-A29D-06 9 79324039 79324039 C T PRUNE2 Missense_Mutation p.D1051N 0.40 tolerated(0.18) possibly_damaging(0.649) TCGA-EE-A29D-06 9 79325460 79325460 G A PRUNE2 Missense_Mutation p.P577L 0.46 tolerated(0.18) benign(0.016) TCGA-EE-A29D-06 9 8471043 8471043 C T PTPRD Silent p.G1152G 0.34 TCGA-EE-A29D-06 9 86279949 86279949 G A UBQLN1 Missense_Mutation p.P482S 0.48 tolerated(0.42) probably_damaging(0.986) TCGA-EE-A29D-06 9 87285767 87285767 C T NTRK2 Missense_Mutation p.S35F 0.37 deleterious(0.04) benign(0.197) TCGA-EE-A29D-06 9 87359970 87359970 C T NTRK2 Silent p.T426T 0.91 TCGA-EE-A29D-06 9 90501747 90501747 C T SPATA31E1 Missense_Mutation p.P782L 0.89 deleterious(0) probably_damaging(0.962) TCGA-EE-A29D-06 9 91686136 91686136 G A SHC3 Missense_Mutation p.S254F 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 9 93606229 93606229 T C SYK Missense_Mutation p.F17L 1.00 deleterious(0.01) possibly_damaging(0.537) TCGA-EE-A29D-06 9 93606230 93606230 T A SYK Missense_Mutation p.F17Y 0.90 tolerated(1) benign(0.05) TCGA-EE-A29D-06 9 95007262 95007262 A G IARS Silent p.F961F 0.97 TCGA-EE-A29D-06 9 95027254 95027254 G A IARS Missense_Mutation p.P553S 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 9 95147854 95147854 G C OGN 3'UTR 0.48 TCGA-EE-A29D-06 9 97084565 97084565 C T NUTM2F Missense_Mutation p.E254K 0.33 deleterious(0.01) benign(0.065) TCGA-EE-A29D-06 9 98774985 98774985 C T ERCC6L2 Silent p.L357L 0.50 TCGA-EE-A29D-06 X 100547832 100547832 C T TAF7L Missense_Mutation p.D68N 0.51 tolerated(0.11) benign(0.024) TCGA-EE-A29D-06 X 100547833 100547833 C T TAF7L Silent p.A67A 0.51 TCGA-EE-A29D-06 X 101581400 101581400 C T NXF2 Missense_Mutation p.P618L 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A29D-06 X 101910587 101910587 C T GPRASP1 Silent p.S582S 0.52 TCGA-EE-A29D-06 X 101971512 101971512 G A GPRASP2 Missense_Mutation p.R572K 0.39 tolerated(0.91) benign(0.001) TCGA-EE-A29D-06 X 102339393 102339393 C T NXF3 Silent p.R76R 0.41 TCGA-EE-A29D-06 X 102974111 102974111 G A GLRA4 Silent p.I269I 0.45 TCGA-EE-A29D-06 X 105450679 105450679 G A MUM1L1 Silent p.R418R 1.00 TCGA-EE-A29D-06 X 106843663 106843663 C T FRMPD3 Silent p.F831F 0.51 TCGA-EE-A29D-06 X 107821574 107821574 G A COL4A5 Silent p.Q247Q 0.95 TCGA-EE-A29D-06 X 107863562 107863562 A G COL4A5 Silent p.E861E 0.91 TCGA-EE-A29D-06 X 107911653 107911653 C T COL4A5 Missense_Mutation p.P1237S 0.83 unknown(0) TCGA-EE-A29D-06 X 107978307 107978307 C T IRS4 Missense_Mutation p.R423K 0.44 deleterious(0.05) possibly_damaging(0.868) TCGA-EE-A29D-06 X 111155590 111155590 C T TRPC5 Missense_Mutation p.E277K 0.40 tolerated(0.59) possibly_damaging(0.824) TCGA-EE-A29D-06 X 117033355 117033355 C T KLHL13 Missense_Mutation p.G498E 0.88 deleterious(0) probably_damaging(0.954) TCGA-EE-A29D-06 X 117035835 117035835 G A KLHL13 Missense_Mutation p.H484Y 0.48 deleterious(0) probably_damaging(0.996) TCGA-EE-A29D-06 X 117053534 117053534 G A KLHL13 Silent p.L177L 0.97 TCGA-EE-A29D-06 X 118221312 118221312 G A KIAA1210 Missense_Mutation p.P1294L 0.48 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A29D-06 X 118752720 118752720 G A SEPT6 3'UTR 0.92 TCGA-EE-A29D-06 X 119495982 119495982 C T ATP1B4 5'UTR 0.35 TCGA-EE-A29D-06 X 120009367 120009367 C T CT47B1 Missense_Mutation p.G53E 0.92 tolerated(0.34) probably_damaging(0.999) TCGA-EE-A29D-06 X 123504071 123504071 C T SH2D1A Missense_Mutation p.L83F 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 X 123518351 123518351 C T TENM1 Missense_Mutation p.D2144N 0.51 deleterious(0.01) benign(0.002) TCGA-EE-A29D-06 X 123556262 123556262 C T TENM1 Missense_Mutation p.G1444E 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 123805592 123805592 G A TENM1 Missense_Mutation p.S370F 0.50 deleterious(0.01) benign(0.011) TCGA-EE-A29D-06 X 124097545 124097545 C T TENM1 Missense_Mutation p.D20N 0.41 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-EE-A29D-06 X 125685552 125685552 C T DCAF12L1 Missense_Mutation p.R347Q 0.35 tolerated(0.05) benign(0.042) TCGA-EE-A29D-06 X 127186075 127186075 G A ACTRT1 Silent p.S37S 0.32 TCGA-EE-A29D-06 X 128914052 128914052 G A SASH3 5'UTR 0.62 TCGA-EE-A29D-06 X 129159108 129159108 C T BCORL1 Missense_Mutation p.R1278C 0.92 probably_damaging(0.927) TCGA-EE-A29D-06 X 129629405 129629405 C T RP1-274L7.1 Intron 0.40 TCGA-EE-A29D-06 X 130222720 130222720 G A ARHGAP36 Silent p.E535E 0.47 TCGA-EE-A29D-06 X 130408835 130408835 G A IGSF1 Silent p.P1168P 0.94 TCGA-EE-A29D-06 X 130415673 130415673 G A IGSF1 Missense_Mutation p.R498C 0.39 deleterious(0.03) benign(0.008) TCGA-EE-A29D-06 X 1317572 1317572 C T CRLF2 Missense_Mutation p.E165K 0.19 tolerated(0.77) benign(0.255) TCGA-EE-A29D-06 X 131762736 131762736 C T HS6ST2 Missense_Mutation p.E485K 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29D-06 X 132161550 132161550 C T USP26 Silent p.L233L 0.50 TCGA-EE-A29D-06 X 132351760 132351760 G A TFDP3 Silent p.I176I 0.86 TCGA-EE-A29D-06 X 133303441 133303441 T A MIR363 RNA 0.46 TCGA-EE-A29D-06 X 135429841 135429841 G A GPR112 Missense_Mutation p.G1326R 0.84 tolerated(0.56) benign(0.01) TCGA-EE-A29D-06 X 135432445 135432445 C T GPR112 Missense_Mutation p.P2194S 0.92 tolerated(0.08) benign(0.144) TCGA-EE-A29D-06 X 13637345 13637345 C T EGFL6 Missense_Mutation p.S389F 0.91 deleterious(0.01) possibly_damaging(0.564) TCGA-EE-A29D-06 X 138701769 138701769 C T MCF2 Missense_Mutation p.E322K 0.42 tolerated(0.87) benign(0.41) TCGA-EE-A29D-06 X 138823170 138823170 G A ATP11C Silent p.F1041F 0.89 TCGA-EE-A29D-06 X 139585906 139585906 C T SOX3 Silent p.T440T 0.36 TCGA-EE-A29D-06 X 140335717 140335717 C T SPANXC Missense_Mutation p.R76K 0.49 tolerated(0.14) benign(0.174) TCGA-EE-A29D-06 X 140785608 140785608 G A SPANXD 3'UTR 0.92 TCGA-EE-A29D-06 X 140984622 140984622 C T MAGEC3 Intron 0.70 TCGA-EE-A29D-06 X 140984916 140984916 G A MAGEC3 Missense_Mutation p.E458K 0.41 tolerated(0.37) benign(0.168) TCGA-EE-A29D-06 X 140985153 140985153 C T MAGEC3 Silent p.L537L 0.53 TCGA-EE-A29D-06 X 140993437 140993437 C T MAGEC1 Missense_Mutation p.P83S 0.45 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A29D-06 X 140994610 140994610 C T MAGEC1 Missense_Mutation p.P474S 0.53 tolerated_low_confidence(0.22) possibly_damaging(0.641) TCGA-EE-A29D-06 X 140995859 140995859 C T MAGEC1 Missense_Mutation p.S890F 0.57 deleterious(0) unknown(0) TCGA-EE-A29D-06 X 140996083 140996083 C T MAGEC1 Silent p.L965L 0.58 TCGA-EE-A29D-06 X 140996136 140996136 C T MAGEC1 Silent p.L982L 0.97 TCGA-EE-A29D-06 X 140996313 140996313 G A MAGEC1 Silent p.R1041R 0.47 TCGA-EE-A29D-06 X 142717442 142717442 C T SLITRK4 Missense_Mutation p.G495R 0.64 deleterious(0) possibly_damaging(0.851) TCGA-EE-A29D-06 X 142718346 142718346 G A SLITRK4 Silent p.L193L 0.35 TCGA-EE-A29D-06 X 142795280 142795280 C T SPANXN2 Missense_Mutation p.G133E 0.32 deleterious(0.05) unknown(0) TCGA-EE-A29D-06 X 142803841 142803841 G A SPANXN2 5'UTR 0.47 TCGA-EE-A29D-06 X 142967434 142967434 C T UBE2NL Missense_Mutation p.H78Y 0.94 deleterious(0.02) possibly_damaging(0.707) TCGA-EE-A29D-06 X 147090223 147090223 C T FMR1NB Silent p.F208F 0.92 TCGA-EE-A29D-06 X 148069078 148069078 G A AFF2 Missense_Mutation p.E1269K 0.97 deleterious(0) probably_damaging(0.994) TCGA-EE-A29D-06 X 148798510 148798510 C T MAGEA11 3'UTR 0.82 TCGA-EE-A29D-06 X 150817138 150817138 A G PASD1 Silent p.E227E 0.96 TCGA-EE-A29D-06 X 150868590 150868590 G A PRRG3 Missense_Mutation p.E44K 0.91 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 150911719 150911719 C T CNGA2 Silent p.N248N 0.91 TCGA-EE-A29D-06 X 151128157 151128157 C T GABRE Intron 0.90 TCGA-EE-A29D-06 X 151283933 151283933 C T RP11-1007I13.4 RNA 0.64 TCGA-EE-A29D-06 X 151900372 151900372 G A MAGEA12 Silent p.F143F 0.58 TCGA-EE-A29D-06 X 152226784 152226784 C T PNMA3 Missense_Mutation p.P458S 0.29 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 X 152959618 152959618 C T SLC6A8 Missense_Mutation p.L430F 0.97 deleterious(0) possibly_damaging(0.845) TCGA-EE-A29D-06 X 153055703 153055703 G A IDH3G Silent p.I60I 0.95 TCGA-EE-A29D-06 X 153130594 153130594 G A L1CAM Missense_Mutation p.P941S 0.61 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29D-06 X 153248286 153248286 G A TMEM187 Missense_Mutation p.G258E 0.33 tolerated(0.9) benign(0.002) TCGA-EE-A29D-06 X 153593319 153593319 G A FLNA Silent p.F566F 0.92 TCGA-EE-A29D-06 X 153696180 153696180 C T PLXNA3 Missense_Mutation p.P1219L 0.97 deleterious(0) probably_damaging(0.984) TCGA-EE-A29D-06 X 154157412 154157412 C T F8 Silent p.A1551A 0.37 TCGA-EE-A29D-06 X 18230704 18230704 C T BEND2 Missense_Mutation p.G158E 0.44 tolerated(0.08) benign(0.008) TCGA-EE-A29D-06 X 20081556 20081556 C T MAP7D2 Silent p.R116R 0.24 TCGA-EE-A29D-06 X 20081557 20081557 C T MAP7D2 Missense_Mutation p.R116K 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 20081642 20081642 C T MAP7D2 Missense_Mutation p.E88K 0.81 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 21886582 21886582 C T MBTPS2 Intron 0.47 TCGA-EE-A29D-06 X 22291921 22291921 C T ZNF645 Silent p.S271S 0.90 TCGA-EE-A29D-06 X 26213014 26213014 G A MAGEB6 Missense_Mutation p.D351N 0.30 deleterious(0.05) probably_damaging(0.994) TCGA-EE-A29D-06 X 27839927 27839927 G A MAGEB10 Silent p.L168L 0.46 TCGA-EE-A29D-06 X 27997672 27997672 G A DCAF8L1 Nonsense_Mutation p.R594* 0.50 TCGA-EE-A29D-06 X 27999004 27999004 G A DCAF8L1 Silent p.L150L 0.50 TCGA-EE-A29D-06 X 30254555 30254555 G A MAGEB3 Missense_Mutation p.D172N 0.25 tolerated(0.15) benign(0.261) TCGA-EE-A29D-06 X 3238090 3238090 C T MXRA5 Missense_Mutation p.G1879E 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 32382752 32382752 G A DMD Missense_Mutation p.L1701F 0.43 possibly_damaging(0.765) TCGA-EE-A29D-06 X 3241590 3241590 C T MXRA5 Silent p.R712R 0.97 TCGA-EE-A29D-06 X 3241889 3241889 G A MXRA5 Missense_Mutation p.L613F 0.41 deleterious(0.03) probably_damaging(1) TCGA-EE-A29D-06 X 3248157 3248157 C T MXRA5 Missense_Mutation p.R204Q 0.54 tolerated(1) benign(0) TCGA-EE-A29D-06 X 44088967 44088967 G T EFHC2 Missense_Mutation p.S560Y 0.37 tolerated(0.11) benign(0.016) TCGA-EE-A29D-06 X 44703365 44703365 G A DUSP21 5'UTR 0.43 TCGA-EE-A29D-06 X 46529114 46529114 C T SLC9A7 Missense_Mutation p.G241R 0.39 deleterious(0.02) benign(0.179) TCGA-EE-A29D-06 X 47101534 47101534 C T USP11 Silent p.I454I 0.91 TCGA-EE-A29D-06 X 47836032 47836032 G A ZNF182 Missense_Mutation p.P485L 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29D-06 X 48791869 48791869 G A OTUD5 Silent p.F314F 0.49 TCGA-EE-A29D-06 X 49063532 49063532 C T CACNA1F Missense_Mutation p.G1733E 0.80 tolerated(0.39) benign(0.011) TCGA-EE-A29D-06 X 49959045 49959045 G A AKAP4 Missense_Mutation p.P107S 0.43 deleterious(0.03) benign(0.024) TCGA-EE-A29D-06 X 50119875 50119875 C T DGKK RNA 0.25 TCGA-EE-A29D-06 X 50131544 50131544 C T DGKK RNA 0.92 TCGA-EE-A29D-06 X 53581758 53581758 G A HUWE1 Missense_Mutation p.P2777L 0.58 possibly_damaging(0.713) TCGA-EE-A29D-06 X 54263408 54263408 C T WNK3 Missense_Mutation p.E1531K 0.88 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29D-06 X 54275315 54275315 G A WNK3 Missense_Mutation p.P1156S 0.98 tolerated_low_confidence(0.14) benign(0.005) TCGA-EE-A29D-06 X 54785238 54785238 G A ITIH6 Silent p.S423S 0.42 TCGA-EE-A29D-06 X 55247856 55247856 G A PAGE5 Missense_Mutation p.G34E 0.49 tolerated(0.54) possibly_damaging(0.675) TCGA-EE-A29D-06 X 57405110 57405110 C T FAAH2 Missense_Mutation p.P257S 0.43 deleterious(0) probably_damaging(0.995) TCGA-EE-A29D-06 X 63444870 63444870 G A ASB12 Missense_Mutation p.P221S 0.44 tolerated(0.49) possibly_damaging(0.557) TCGA-EE-A29D-06 X 65392422 65392422 C T HEPH Silent p.F185F 0.40 TCGA-EE-A29D-06 X 65420575 65420575 C T HEPH Silent p.I740I 0.91 TCGA-EE-A29D-06 X 69419702 69419702 G A DGAT2L6 Nonsense_Mutation p.W79* 0.58 TCGA-EE-A29D-06 X 69460015 69460015 G A AWAT1 Missense_Mutation p.E288K 1.00 tolerated(0.25) benign(0.186) TCGA-EE-A29D-06 X 69639986 69639986 C T KIF4A Silent p.L1190L 0.92 TCGA-EE-A29D-06 X 70329078 70329078 C T IL2RG Missense_Mutation p.E253K 0.56 tolerated(0.13) benign(0.027) TCGA-EE-A29D-06 X 70346835 70346835 G A MED12 Missense_Mutation p.S901N 0.88 possibly_damaging(0.756) TCGA-EE-A29D-06 X 7171258 7171258 C T STS Silent p.L11L 0.52 TCGA-EE-A29D-06 X 7171306 7171306 G A STS Silent p.P27P 0.57 TCGA-EE-A29D-06 X 71840658 71840658 C T PHKA1 Missense_Mutation p.G685E 0.55 tolerated(0.25) benign(0.049) TCGA-EE-A29D-06 X 72433164 72433164 C T NAP1L2 Missense_Mutation p.D389N 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29D-06 X 72433728 72433728 C T NAP1L2 Missense_Mutation p.D201N 0.79 tolerated(0.1) possibly_damaging(0.818) TCGA-EE-A29D-06 X 73046879 73046879 C T XIST RNA 0.44 TCGA-EE-A29D-06 X 73062560 73062560 G A XIST RNA 0.39 TCGA-EE-A29D-06 X 73065732 73065732 G A XIST RNA 0.47 TCGA-EE-A29D-06 X 73066499 73066499 G A XIST RNA 0.38 TCGA-EE-A29D-06 X 73070995 73070995 C T XIST RNA 0.91 TCGA-EE-A29D-06 X 73961097 73961097 G A KIAA2022 Nonsense_Mutation p.Q1099* 0.48 TCGA-EE-A29D-06 X 73962772 73962772 G A KIAA2022 Silent p.I540I 0.92 TCGA-EE-A29D-06 X 75004517 75004517 G A MAGEE2 Nonsense_Mutation p.Q124* 0.55 TCGA-EE-A29D-06 X 77218246 77218246 C T ATP7A Intron 0.58 TCGA-EE-A29D-06 X 77245351 77245351 C T ATP7A Silent p.S411S 0.92 TCGA-EE-A29D-06 X 77296150 77296150 C T ATP7A Silent p.I1240I 0.52 TCGA-EE-A29D-06 X 77394419 77394419 C T TAF9B Silent p.V18V 0.49 TCGA-EE-A29D-06 X 77913210 77913210 G A ZCCHC5 Silent p.F236F 0.95 TCGA-EE-A29D-06 X 78010772 78010772 C T LPAR4 Missense_Mutation p.R136C 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29D-06 X 78011029 78011029 C T LPAR4 Silent p.V221V 0.92 TCGA-EE-A29D-06 X 78217036 78217036 A T P2RY10 Nonstop_Mutation p.*340Lext*2 0.94 TCGA-EE-A29D-06 X 78427144 78427144 G A GPR174 Missense_Mutation p.D214N 0.47 tolerated(0.12) benign(0.006) TCGA-EE-A29D-06 X 83128092 83128092 C T CYLC1 Missense_Mutation p.P126S 0.62 tolerated(0.45) possibly_damaging(0.644) TCGA-EE-A29D-06 X 83129300 83129300 C T CYLC1 Silent p.S528S 0.40 TCGA-EE-A29D-06 X 83319409 83319409 C T RPS6KA6 Missense_Mutation p.G705E 1.00 tolerated(0.09) benign(0.009) TCGA-EE-A29D-06 X 83360882 83360882 G A RPS6KA6 Silent p.I456I 0.97 TCGA-EE-A29D-06 X 84510303 84510303 C T ZNF711 Missense_Mutation p.H40Y 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.474) TCGA-EE-A29D-06 X 84526400 84526400 C T ZNF711 Missense_Mutation p.P618S 0.62 deleterious(0.01) probably_damaging(1) TCGA-EE-A29D-06 X 84560888 84560888 A C POF1B Missense_Mutation p.L449W 0.32 deleterious(0) probably_damaging(0.982) TCGA-EE-A29D-06 X 84586074 84586074 C T POF1B Silent p.Q245Q 0.42 TCGA-EE-A29D-06 X 86890731 86890731 C T KLHL4 Silent p.A627A 0.53 TCGA-EE-A29D-06 X 8766516 8766516 C T FAM9A Silent p.K75K 0.94 TCGA-EE-A29D-06 X 91873617 91873617 C T PCDH11X Missense_Mutation p.S1241L 0.36 deleterious_low_confidence(0.01) benign(0.118) TCGA-EE-A29D-06 X 96354749 96354749 G A DIAPH2 Silent p.K768K 0.91 TCGA-EE-A29D-06 X 99551703 99551703 C T PCDH19 Missense_Mutation p.D1007N 0.33 tolerated(0.17) benign(0.206) TCGA-EE-A29D-06 X 99551716 99551716 G A PCDH19 Silent p.V1002V 0.50 TCGA-EE-A29D-06 Y 14902403 14902403 C T USP9Y Missense_Mutation p.P1209S 0.44 tolerated(0.05) possibly_damaging(0.818) TCGA-EE-A29D-06 Y 16734009 16734009 C T NLGN4Y Missense_Mutation p.P4S 0.65 tolerated_low_confidence(0.22) unknown(0) TCGA-EE-A29D-06 Y 16734109 16734109 C T NLGN4Y Missense_Mutation p.T37I 0.35 tolerated(0.52) benign(0.197) TCGA-EE-A29D-06 Y 16952329 16952329 C T NLGN4Y Silent p.F546F 0.42 TCGA-EE-A29D-06 Y 23562895 23562895 G A RBMY2EP RNA 0.26 TCGA-EE-A29D-06 Y 2847345 2847345 C T ZFY Nonsense_Mutation p.Q573* 0.89 TCGA-EE-A29D-06 Y 5605784 5605784 G A PCDH11Y Nonsense_Mutation p.W1275* 0.38 TCGA-EE-A29D-06 Y 9195492 9195492 G A TSPY8 Missense_Mutation p.R14K 0.16 tolerated_low_confidence(0.62) benign(0.01) TCGA-EE-A29E-06 10 100144780 100144780 G A PYROXD2 Silent p.A533A 0.41 TCGA-EE-A29E-06 10 100177480 100177480 C T HPS1 Silent p.K648K 0.52 TCGA-EE-A29E-06 10 101640031 101640031 G A DNMBP Missense_Mutation p.S1362F 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 101640083 101640083 G A DNMBP Missense_Mutation p.P1345S 0.54 deleterious(0.02) possibly_damaging(0.893) TCGA-EE-A29E-06 10 101648593 101648593 A G DNMBP Missense_Mutation p.F1092L 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 10 101969372 101969372 G A CHUK Nonsense_Mutation p.Q370* 0.42 TCGA-EE-A29E-06 10 102249868 102249868 G A SEC31B Silent p.T954T 0.40 TCGA-EE-A29E-06 10 102509623 102509623 C T PAX2 Missense_Mutation p.S55F 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 102566350 102566350 C T PAX2 Silent p.I283I 0.43 TCGA-EE-A29E-06 10 102763772 102763772 C T LZTS2 Missense_Mutation p.S306F 0.38 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A29E-06 10 104377253 104377253 C T SUFU Intron 0.52 TCGA-EE-A29E-06 10 105361947 105361947 G A SH3PXD2A Nonsense_Mutation p.R982* 0.24 TCGA-EE-A29E-06 10 105386856 105386856 C T SH3PXD2A Silent p.K236K 0.53 TCGA-EE-A29E-06 10 105800840 105800840 G A COL17A1 Missense_Mutation p.S895L 0.36 possibly_damaging(0.885) TCGA-EE-A29E-06 10 105945764 105945764 C T WDR96 Missense_Mutation p.G660R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 106074373 106074373 G A ITPRIP Silent p.I479I 0.38 TCGA-EE-A29E-06 10 106128210 106128210 C T CCDC147 Silent p.L274L 0.42 TCGA-EE-A29E-06 10 106865234 106865234 C T SORCS3 Silent p.I391I 0.32 TCGA-EE-A29E-06 10 106937874 106937874 T A SORCS3 Missense_Mutation p.V651D 0.34 deleterious(0) benign(0.01) TCGA-EE-A29E-06 10 106937875 106937875 T A SORCS3 Silent p.V651V 0.35 TCGA-EE-A29E-06 10 106937879 106937879 C T SORCS3 Missense_Mutation p.L653F 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 10 106974277 106974277 G A SORCS3 Missense_Mutation p.G818E 0.38 tolerated(1) possibly_damaging(0.552) TCGA-EE-A29E-06 10 112635822 112635822 C T PDCD4 Missense_Mutation p.P13S 0.29 tolerated_low_confidence(0.2) benign(0.011) TCGA-EE-A29E-06 10 115383364 115383364 T A NRAP Missense_Mutation p.K794I 0.33 tolerated(0.26) probably_damaging(0.997) TCGA-EE-A29E-06 10 115526406 115526406 G A PLEKHS1 Silent p.K45K 0.33 TCGA-EE-A29E-06 10 117059554 117059554 C T ATRNL1 Missense_Mutation p.P809L 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 118084575 118084575 G A CCDC172 Missense_Mutation p.E18K 0.39 tolerated(0.26) possibly_damaging(0.747) TCGA-EE-A29E-06 10 119013769 119013769 C T SLC18A2 Intron 0.33 TCGA-EE-A29E-06 10 119042674 119042674 G A PDZD8 3'UTR 0.50 TCGA-EE-A29E-06 10 12071456 12071456 G A UPF2 Missense_Mutation p.R145C 0.41 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29E-06 10 121336990 121336990 A C TIAL1 Missense_Mutation p.F254C 0.36 deleterious(0.02) possibly_damaging(0.786) TCGA-EE-A29E-06 10 12162788 12162788 C T DHTKD1 Silent p.L887L 0.35 TCGA-EE-A29E-06 10 123239627 123239627 C T FGFR2 Intron 0.41 TCGA-EE-A29E-06 10 123244952 123244952 C T FGFR2 Missense_Mutation p.E719K 0.48 deleterious(0.02) benign(0.109) TCGA-EE-A29E-06 10 123843897 123843897 C T TACC2 Missense_Mutation p.P628S 0.44 benign(0.106) TCGA-EE-A29E-06 10 123844357 123844357 C T TACC2 Missense_Mutation p.P781L 0.36 benign(0.051) TCGA-EE-A29E-06 10 123954640 123954640 G A TACC2 Missense_Mutation p.E1974K 0.56 probably_damaging(0.991) TCGA-EE-A29E-06 10 123970390 123970390 G A TACC2 Silent p.V2150V 0.35 TCGA-EE-A29E-06 10 123985961 123985961 C T TACC2 Silent p.P2563P 0.31 TCGA-EE-A29E-06 10 124266289 124266289 C T HTRA1 Missense_Mutation p.S287F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 124389355 124389355 G A DMBT1 Splice_Site p.X1761_splice 0.34 TCGA-EE-A29E-06 10 124390787 124390787 C T DMBT1 Silent p.V1983V 0.40 TCGA-EE-A29E-06 10 124399773 124399773 C T DMBT1 Missense_Mutation p.S2258F 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 10 124457719 124457719 G A C10orf120 Missense_Mutation p.H180Y 0.40 deleterious(0.02) benign(0.182) TCGA-EE-A29E-06 10 124457734 124457734 G A C10orf120 Missense_Mutation p.R175W 0.39 deleterious(0) probably_damaging(0.985) TCGA-EE-A29E-06 10 124458883 124458883 C T C10orf120 Silent p.G74G 0.42 TCGA-EE-A29E-06 10 125434415 125434415 C T GPR26 Silent p.F250F 0.40 TCGA-EE-A29E-06 10 125528047 125528047 C T CPXM2 Missense_Mutation p.E432K 0.19 tolerated(0.35) benign(0.099) TCGA-EE-A29E-06 10 125528156 125528156 G A CPXM2 Silent p.F395F 0.46 TCGA-EE-A29E-06 10 125557535 125557535 C T CPXM2 Silent p.G282G 0.47 TCGA-EE-A29E-06 10 125557536 125557536 C T CPXM2 Missense_Mutation p.G282E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 125805437 125805437 G A CHST15 Missense_Mutation p.L98F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 125805438 125805438 G A CHST15 Silent p.I97I 0.36 TCGA-EE-A29E-06 10 1262912 1262912 G A ADARB2 Missense_Mutation p.S554F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 126355985 126355985 G T FAM53B Intron 0.41 TCGA-EE-A29E-06 10 126715606 126715606 G A CTBP2 Silent p.A241A 0.41 TCGA-EE-A29E-06 10 128796375 128796375 A G DOCK1 Missense_Mutation p.D210G 0.50 tolerated(0.28) possibly_damaging(0.539) TCGA-EE-A29E-06 10 12940599 12940599 C T CCDC3 Silent p.L210L 0.45 TCGA-EE-A29E-06 10 129536803 129536803 C T FOXI2 Silent p.T177T 0.29 TCGA-EE-A29E-06 10 131755539 131755539 G A EBF3 Silent p.D179D 0.41 TCGA-EE-A29E-06 10 13336432 13336432 G A PHYH Missense_Mutation p.P137L 0.32 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 10 134013999 134013999 C T DPYSL4 Silent p.L317L 0.37 TCGA-EE-A29E-06 10 134754510 134754510 C A TTC40 Nonsense_Mutation p.G121* 0.34 TCGA-EE-A29E-06 10 134886492 134886492 G A GPR123 Missense_Mutation p.G176R 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A29E-06 10 134886493 134886493 G A GPR123 Missense_Mutation p.G176E 0.38 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29E-06 10 135165858 135165858 G A PRAP1 Missense_Mutation p.E124K 0.25 tolerated(0.06) probably_damaging(0.981) TCGA-EE-A29E-06 10 135368878 135368878 C T SYCE1 Missense_Mutation p.E299K 0.42 deleterious(0.01) possibly_damaging(0.641) TCGA-EE-A29E-06 10 135369376 135369376 C T SYCE1 Silent p.V209V 0.22 TCGA-EE-A29E-06 10 15120491 15120491 G A ACBD7 3'UTR 0.30 TCGA-EE-A29E-06 10 15154963 15154963 C T NMT2 Splice_Site p.X391_splice 0.45 TCGA-EE-A29E-06 10 15559104 15559104 T A ITGA8 3'UTR 0.35 TCGA-EE-A29E-06 10 15647748 15647748 G A ITGA8 Missense_Mutation p.P649S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 1569002 1569002 C T ADARB2 Intron 0.45 TCGA-EE-A29E-06 10 16528519 16528519 C T PTER Missense_Mutation p.H201Y 0.39 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 10 17088080 17088080 C T CUBN Missense_Mutation p.E1115K 0.50 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29E-06 10 17127727 17127727 A T CUBN Missense_Mutation p.L660H 0.38 deleterious(0.01) possibly_damaging(0.838) TCGA-EE-A29E-06 10 18292082 18292082 T A SLC39A12 Intron 0.41 TCGA-EE-A29E-06 10 18439852 18439852 G A CACNB2 Missense_Mutation p.G54E 0.32 deleterious(0.05) probably_damaging(1) TCGA-EE-A29E-06 10 21074637 21074637 G A NEBL 3'UTR 0.44 TCGA-EE-A29E-06 10 21115400 21115400 C T NEBL Silent p.K615K 0.35 TCGA-EE-A29E-06 10 21141544 21141544 C T NEBL Missense_Mutation p.G313E 0.30 deleterious(0) possibly_damaging(0.796) TCGA-EE-A29E-06 10 21148728 21148728 C T NEBL Missense_Mutation p.E238K 0.33 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A29E-06 10 22618527 22618527 C T BMI1 3'UTR 0.36 TCGA-EE-A29E-06 10 24832808 24832808 G A KIAA1217 Missense_Mutation p.E1537K 0.43 deleterious(0.01) benign(0.108) TCGA-EE-A29E-06 10 24835169 24835169 C T KIAA1217 Silent p.I1916I 0.33 TCGA-EE-A29E-06 10 24873957 24873957 G A ARHGAP21 Missense_Mutation p.S1754F 0.42 tolerated(0.05) benign(0.336) TCGA-EE-A29E-06 10 24874769 24874769 G A ARHGAP21 Silent p.P1483P 0.48 TCGA-EE-A29E-06 10 25887227 25887227 C T GPR158 Missense_Mutation p.T891I 0.35 deleterious(0.01) benign(0) TCGA-EE-A29E-06 10 26310491 26310491 C T MYO3A Silent p.S215S 0.34 TCGA-EE-A29E-06 10 26414399 26414399 G A MYO3A Missense_Mutation p.G659E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 26457766 26457766 G A MYO3A Silent p.Q1079Q 0.37 TCGA-EE-A29E-06 10 26459364 26459364 C T MYO3A Silent p.V1098V 0.37 TCGA-EE-A29E-06 10 26851252 26851252 C T APBB1IP Intron 0.40 TCGA-EE-A29E-06 10 27703007 27703007 C T PTCHD3 Missense_Mutation p.G58E 0.54 tolerated_low_confidence(0.19) probably_damaging(0.969) TCGA-EE-A29E-06 10 28024257 28024257 A G MKX Missense_Mutation p.V132A 0.35 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A29E-06 10 28342980 28342980 G A MPP7 3'UTR 0.36 TCGA-EE-A29E-06 10 28420556 28420556 G A MPP7 Missense_Mutation p.P127L 0.47 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A29E-06 10 30316266 30316266 C T KIAA1462 Silent p.V937V 0.42 TCGA-EE-A29E-06 10 30317386 30317386 C T KIAA1462 Missense_Mutation p.G564E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 10 30336624 30336624 C T KIAA1462 Missense_Mutation p.G40S 0.40 tolerated(0.25) possibly_damaging(0.483) TCGA-EE-A29E-06 10 30658255 30658255 C T AL161651.1 5'Flank 0.24 TCGA-EE-A29E-06 10 30915168 30915168 C T LYZL2 Missense_Mutation p.S101N 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 10 31134408 31134408 G A ZNF438 Nonsense_Mutation p.Q657* 0.41 TCGA-EE-A29E-06 10 31809275 31809275 C T ZEB1 Nonsense_Mutation p.Q339* 0.32 TCGA-EE-A29E-06 10 31809368 31809368 C T ZEB1 Missense_Mutation p.P370S 0.33 tolerated(0.1) possibly_damaging(0.776) TCGA-EE-A29E-06 10 31810200 31810200 C T ZEB1 Missense_Mutation p.S647F 0.48 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29E-06 10 31810519 31810519 C T ZEB1 Silent p.I753I 0.40 TCGA-EE-A29E-06 10 31816045 31816045 G A ZEB1 Silent p.E1077E 0.46 TCGA-EE-A29E-06 10 33190554 33190554 G A ITGB1 Missense_Mutation p.P781S 0.48 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 10 33469267 33469267 C T NRP1 Missense_Mutation p.G837R 0.37 tolerated(0.47) benign(0.008) TCGA-EE-A29E-06 10 34636976 34636976 C T PARD3 Missense_Mutation p.R712Q 0.45 tolerated(0.05) probably_damaging(0.956) TCGA-EE-A29E-06 10 34673118 34673118 G A PARD3 Missense_Mutation p.R319C 0.43 deleterious(0.02) benign(0.001) TCGA-EE-A29E-06 10 37421210 37421210 G A ANKRD30A Missense_Mutation p.E129K 0.41 tolerated(0.45) benign(0.213) TCGA-EE-A29E-06 10 37425564 37425564 G A ANKRD30A Missense_Mutation p.R206Q 0.22 tolerated(0.17) benign(0.005) TCGA-EE-A29E-06 10 37478487 37478487 T A ANKRD30A Splice_Site p.X782_splice 0.27 TCGA-EE-A29E-06 10 37505242 37505242 G A ANKRD30A Silent p.K945K 0.39 TCGA-EE-A29E-06 10 38121875 38121875 G A ZNF248 Silent p.P136P 0.38 TCGA-EE-A29E-06 10 43279930 43279930 C T BMS1 Nonsense_Mutation p.Q30* 0.53 TCGA-EE-A29E-06 10 44112749 44112749 C T ZNF485 Missense_Mutation p.P420S 0.37 tolerated(0.87) benign(0.002) TCGA-EE-A29E-06 10 46967484 46967484 T C SYT15 Missense_Mutation p.Q198R 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A29E-06 10 46999814 46999814 G A GPRIN2 Missense_Mutation p.D312N 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 47086733 47086733 C T NPY4R 5'UTR 0.27 TCGA-EE-A29E-06 10 48390902 48390902 C T RBP3 5'UTR 0.33 TCGA-EE-A29E-06 10 48414412 48414412 G A GDF2 Silent p.L152L 0.28 TCGA-EE-A29E-06 10 48968612 48968612 A G GLUD1P2 RNA 0.42 TCGA-EE-A29E-06 10 49663121 49663121 G A ARHGAP22 Missense_Mutation p.P255L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 50315705 50315705 C T VSTM4 Missense_Mutation p.E131K 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 10 50944459 50944459 T G OGDHL Missense_Mutation p.K900Q 0.33 tolerated(0.12) benign(0.004) TCGA-EE-A29E-06 10 50955095 50955095 C A OGDHL Nonsense_Mutation p.G383* 0.39 TCGA-EE-A29E-06 10 50960259 50960259 C T OGDHL Missense_Mutation p.E172K 0.31 tolerated(0.47) benign(0.003) TCGA-EE-A29E-06 10 5138689 5138689 G A AKR1C3 Missense_Mutation p.E58K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 52610430 52610430 C T A1CF Missense_Mutation p.E40K 0.46 tolerated(0.92) benign(0.039) TCGA-EE-A29E-06 10 55566490 55566490 C T PCDH15 Missense_Mutation p.R1632K 0.28 tolerated_low_confidence(1) benign(0.071) TCGA-EE-A29E-06 10 55570336 55570336 C T PCDH15 Missense_Mutation p.E1495K 0.45 benign(0.038) TCGA-EE-A29E-06 10 55582262 55582262 G A PCDH15 Missense_Mutation p.P1744S 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29E-06 10 55582378 55582378 G A PCDH15 Missense_Mutation p.S1705L 0.33 tolerated_low_confidence(0.13) benign(0.002) TCGA-EE-A29E-06 10 55587175 55587175 C T PCDH15 Missense_Mutation p.E1449K 0.37 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-EE-A29E-06 10 55587287 55587287 C T PCDH15 Silent p.K1411K 0.38 TCGA-EE-A29E-06 10 55626549 55626549 C T PCDH15 Silent p.E1190E 0.40 TCGA-EE-A29E-06 10 55721651 55721651 C T PCDH15 Missense_Mutation p.G957E 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29E-06 10 55721652 55721652 C T PCDH15 Missense_Mutation p.G957R 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 56089365 56089365 G A PCDH15 Silent p.I232I 0.44 TCGA-EE-A29E-06 10 6067912 6067912 C T IL2RA Silent p.L47L 0.37 TCGA-EE-A29E-06 10 61830531 61830531 C T ANK3 Missense_Mutation p.E3370K 0.44 benign(0.014) TCGA-EE-A29E-06 10 61832647 61832647 C T ANK3 Silent p.E2664E 0.36 TCGA-EE-A29E-06 10 61832682 61832682 C T ANK3 Missense_Mutation p.G2653S 0.36 probably_damaging(0.997) TCGA-EE-A29E-06 10 61834107 61834107 G A ANK3 Missense_Mutation p.P2178S 0.34 probably_damaging(0.992) TCGA-EE-A29E-06 10 61835021 61835021 G A ANK3 Missense_Mutation p.S1873L 0.31 benign(0.014) TCGA-EE-A29E-06 10 61894112 61894112 C T ANK3 Missense_Mutation p.D920N 0.44 benign(0.118) TCGA-EE-A29E-06 10 61932885 61932885 G A ANK3 Silent p.F748F 0.32 TCGA-EE-A29E-06 10 61946557 61946557 G A ANK3 Silent p.S667S 0.45 TCGA-EE-A29E-06 10 61967904 61967904 C T ANK3 Missense_Mutation p.D362N 0.30 probably_damaging(0.999) TCGA-EE-A29E-06 10 62149402 62149402 G A ANK3 5'UTR 0.50 TCGA-EE-A29E-06 10 63212612 63212612 G T TMEM26 Intron 0.37 TCGA-EE-A29E-06 10 63519931 63519931 G A C10orf107 Missense_Mutation p.E135K 0.31 deleterious(0.04) benign(0.365) TCGA-EE-A29E-06 10 6470232 6470232 C T PRKCQ Missense_Mutation p.M686I 0.41 tolerated(0.93) benign(0.165) TCGA-EE-A29E-06 10 64913929 64913929 C T NRBF2 Missense_Mutation p.P272L 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 10 68686207 68686207 C T LRRTM3 5'UTR 0.51 TCGA-EE-A29E-06 10 68979461 68979461 G A CTNNA3 Silent p.L249L 0.42 TCGA-EE-A29E-06 10 69571283 69571283 G A DNAJC12 Missense_Mutation p.T99M 0.42 tolerated(0.11) benign(0.124) TCGA-EE-A29E-06 10 70411644 70411644 C T TET1 Missense_Mutation p.L1440F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 70446316 70446316 C T TET1 Silent p.P1752P 0.39 TCGA-EE-A29E-06 10 70645510 70645510 C T STOX1 Missense_Mutation p.P653L 0.39 tolerated(0.09) benign(0.021) TCGA-EE-A29E-06 10 70987058 70987058 G A HKDC1 Silent p.K53K 0.44 TCGA-EE-A29E-06 10 71688693 71688693 G A COL13A1 Missense_Mutation p.G464R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 72061176 72061176 G A LRRC20 Silent p.I163I 0.56 TCGA-EE-A29E-06 10 72358192 72358192 C T PRF1 Missense_Mutation p.G429R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 72538280 72538280 C T TBATA Intron 0.36 TCGA-EE-A29E-06 10 73051457 73051457 C T UNC5B Silent p.F521F 0.48 TCGA-EE-A29E-06 10 73104034 73104034 C A SLC29A3 Missense_Mutation p.F123L 0.31 deleterious(0.03) benign(0.145) TCGA-EE-A29E-06 10 73544059 73544059 C T CDH23 Missense_Mutation p.S1800F 0.35 deleterious(0) probably_damaging(0.919) TCGA-EE-A29E-06 10 74790066 74790066 A G P4HA1 Missense_Mutation p.L404P 0.40 deleterious(0) possibly_damaging(0.474) TCGA-EE-A29E-06 10 75435613 75435613 G A AGAP5 Missense_Mutation p.P269S 0.36 tolerated(0.77) benign(0.437) TCGA-EE-A29E-06 10 75488146 75488146 G A RP11-464F9.1 RNA 0.42 TCGA-EE-A29E-06 10 75533490 75533490 C G FUT11 Silent p.P417P 0.50 TCGA-EE-A29E-06 10 75533491 75533491 C T FUT11 Missense_Mutation p.H418Y 0.49 tolerated(0.07) benign(0.001) TCGA-EE-A29E-06 10 7604878 7604878 C T ITIH5 3'UTR 0.36 TCGA-EE-A29E-06 10 76468180 76468180 C T ADK Missense_Mutation p.P356S 0.35 tolerated(0.07) benign(0.424) TCGA-EE-A29E-06 10 7679434 7679434 C T ITIH5 Missense_Mutation p.G137R 0.26 tolerated(0.1) benign(0.351) TCGA-EE-A29E-06 10 8006646 8006646 C T TAF3 Silent p.I391I 0.36 TCGA-EE-A29E-06 10 81319179 81319179 C T SFTPA2 Missense_Mutation p.E21K 0.38 tolerated(0.29) benign(0.003) TCGA-EE-A29E-06 10 82369182 82369182 G A SH2D4B Splice_Site p.X287_splice 0.46 TCGA-EE-A29E-06 10 84711313 84711313 C T NRG3 Silent p.F381F 0.51 TCGA-EE-A29E-06 10 85997366 85997366 C T LRIT1 Missense_Mutation p.E67K 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 10 87362269 87362269 G A GRID1 Silent p.L931L 0.45 TCGA-EE-A29E-06 10 87362321 87362321 G A GRID1 Silent p.T913T 0.38 TCGA-EE-A29E-06 10 87362322 87362322 G A GRID1 Missense_Mutation p.T913I 0.38 deleterious_low_confidence(0) benign(0.024) TCGA-EE-A29E-06 10 88418296 88418296 C T OPN4 Silent p.T171T 0.42 TCGA-EE-A29E-06 10 88439889 88439889 C T LDB3 Missense_Mutation p.P99L 0.33 deleterious(0.02) possibly_damaging(0.815) TCGA-EE-A29E-06 10 88988306 88988306 C T NUTM2A Silent p.V223V 0.24 TCGA-EE-A29E-06 10 90366539 90366539 G A LIPJ Missense_Mutation p.E326K 0.35 tolerated(0.72) benign(0.011) TCGA-EE-A29E-06 10 90438260 90438260 G A LIPF Missense_Mutation p.G350D 0.33 deleterious(0) possibly_damaging(0.815) TCGA-EE-A29E-06 10 90528619 90528619 G A LIPN Silent p.T202T 0.38 TCGA-EE-A29E-06 10 91143184 91143184 G A IFIT1B Silent p.R38R 0.33 TCGA-EE-A29E-06 10 92509277 92509277 G A HTR7 Missense_Mutation p.S205F 0.40 tolerated(0.72) possibly_damaging(0.56) TCGA-EE-A29E-06 10 92675338 92675338 G A ANKRD1 Silent p.L271L 0.45 TCGA-EE-A29E-06 10 93083 93083 C T TUBB8 Missense_Mutation p.D417N 0.52 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A29E-06 10 94373212 94373212 C T KIF11 Nonsense_Mutation p.Q290* 0.38 TCGA-EE-A29E-06 10 94373356 94373356 C T KIF11 Missense_Mutation p.P338S 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 10 94708064 94708064 C T EXOC6 Silent p.I448I 0.38 TCGA-EE-A29E-06 10 95088581 95088581 G A MYOF Silent p.I1690I 0.33 TCGA-EE-A29E-06 10 95129435 95129435 G A MYOF Silent p.F852F 0.35 TCGA-EE-A29E-06 10 95169408 95169408 C T MYOF Silent p.S174S 0.40 TCGA-EE-A29E-06 10 95353622 95353622 C T RBP4 Missense_Mutation p.E176K 0.35 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A29E-06 10 95372619 95372619 C T PDE6C Missense_Mutation p.S46F 0.36 tolerated(0.3) benign(0.105) TCGA-EE-A29E-06 10 95380680 95380680 C T PDE6C Silent p.I222I 0.38 TCGA-EE-A29E-06 10 95386417 95386417 C T PDE6C Silent p.I320I 0.38 TCGA-EE-A29E-06 10 95400676 95400676 G A PDE6C Splice_Site p.X580_splice 0.30 TCGA-EE-A29E-06 10 95422875 95422875 G A PDE6C Missense_Mutation p.D820N 0.44 deleterious(0.04) benign(0.007) TCGA-EE-A29E-06 10 95718736 95718736 C T PIPSL RNA 0.40 TCGA-EE-A29E-06 10 95719245 95719245 T A PIPSL RNA 0.38 TCGA-EE-A29E-06 10 95892132 95892132 C T PLCE1 Missense_Mutation p.L470F 0.43 deleterious_low_confidence(0.03) benign(0.396) TCGA-EE-A29E-06 10 96058370 96058370 C T PLCE1 Missense_Mutation p.P1801L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 10 96058371 96058371 C T PLCE1 Silent p.P1801P 0.31 TCGA-EE-A29E-06 10 96443702 96443702 C T CYP2C18 Silent p.I42I 0.35 TCGA-EE-A29E-06 10 96580387 96580387 G A CYP2C19 Silent p.E318E 0.26 TCGA-EE-A29E-06 10 96701771 96701771 G A CYP2C9 Missense_Mutation p.G109R 0.37 deleterious(0.02) benign(0.276) TCGA-EE-A29E-06 10 96798654 96798654 C T CYP2C8 Missense_Mutation p.G431R 0.38 deleterious(0) possibly_damaging(0.896) TCGA-EE-A29E-06 10 96824557 96824557 C T CYP2C8 Silent p.Q214Q 0.30 TCGA-EE-A29E-06 10 96971651 96971651 C T C10orf129 Nonsense_Mutation p.Q258* 0.44 TCGA-EE-A29E-06 10 97028577 97028577 C T PDLIM1 Silent p.G97G 0.40 TCGA-EE-A29E-06 10 97031403 97031403 G A PDLIM1 Missense_Mutation p.L79F 0.42 deleterious(0.02) benign(0.443) TCGA-EE-A29E-06 10 97916531 97916531 C T ZNF518A RNA 0.42 TCGA-EE-A29E-06 10 97976426 97976426 G A BLNK Missense_Mutation p.S197L 0.33 tolerated(0.25) benign(0.003) TCGA-EE-A29E-06 10 98469429 98469429 C T PIK3AP1 Missense_Mutation p.E109K 0.46 tolerated(0.08) benign(0.01) TCGA-EE-A29E-06 10 98764506 98764506 C T SLIT1 Silent p.Q1218Q 0.41 TCGA-EE-A29E-06 10 98781151 98781151 G A SLIT1 Silent p.L868L 0.33 TCGA-EE-A29E-06 10 98807587 98807587 C T SLIT1 Silent p.T498T 0.35 TCGA-EE-A29E-06 10 99968599 99968599 C T R3HCC1L Missense_Mutation p.S243F 0.36 deleterious(0) probably_damaging(0.973) TCGA-EE-A29E-06 11 100061891 100061891 C T CNTN5 Silent p.I538I 0.39 TCGA-EE-A29E-06 11 100064243 100064243 C T CNTN5 Missense_Mutation p.P578S 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 11 100126511 100126511 G A CNTN5 Silent p.G675G 0.41 TCGA-EE-A29E-06 11 100170010 100170010 C T CNTN5 Silent p.F834F 0.41 TCGA-EE-A29E-06 11 100170081 100170081 G A CNTN5 Missense_Mutation p.G858E 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 11 100179205 100179205 G A CNTN5 Intron 0.42 TCGA-EE-A29E-06 11 100999088 100999088 C T PGR Silent p.K238K 0.26 TCGA-EE-A29E-06 11 101951950 101951950 C T C11orf70 Nonsense_Mutation p.R205* 0.27 TCGA-EE-A29E-06 11 102479721 102479721 G A MMP20 Missense_Mutation p.P253L 0.38 tolerated(0.28) benign(0.195) TCGA-EE-A29E-06 11 102713201 102713201 C T MMP3 Missense_Mutation p.E154K 0.39 tolerated(0.12) benign(0.1) TCGA-EE-A29E-06 11 102826022 102826022 G A MMP13 Silent p.F107F 0.51 TCGA-EE-A29E-06 11 103033810 103033832 GAAGGAATGTGTTACTACTGGGC - DYNC2H1 Frame_Shift_Del p.E1517Ffs*6 0.12 TCGA-EE-A29E-06 11 10503757 10503757 G A AMPD3 Missense_Mutation p.E201K 0.48 tolerated(0.2) benign(0.031) TCGA-EE-A29E-06 11 10508849 10508849 G A AMPD3 Missense_Mutation p.E302K 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 11 105775926 105775926 C T GRIA4 Nonsense_Mutation p.R353* 0.32 TCGA-EE-A29E-06 11 10580522 10580522 C T LYVE1 3'UTR 0.38 TCGA-EE-A29E-06 11 105967543 105967543 C T AASDHPPT Missense_Mutation p.S280F 0.41 tolerated(0.11) benign(0.179) TCGA-EE-A29E-06 11 10622540 10622540 C T MRVI1 Missense_Mutation p.E648K 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 11 107518311 107518311 G A ELMOD1 Missense_Mutation p.G180R 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 107832799 107832799 C T RAB39A Missense_Mutation p.R119W 0.44 deleterious(0.02) possibly_damaging(0.773) TCGA-EE-A29E-06 11 107833187 107833187 G A RAB39A 3'UTR 0.41 TCGA-EE-A29E-06 11 107917082 107917082 A G CUL5 Missense_Mutation p.K74E 0.36 tolerated(0.6) benign(0.037) TCGA-EE-A29E-06 11 108043009 108043009 G A NPAT Missense_Mutation p.P901L 0.30 deleterious(0) benign(0.072) TCGA-EE-A29E-06 11 108164093 108164093 C T ATM Silent p.L1555L 0.41 TCGA-EE-A29E-06 11 10824772 10824772 G A EIF4G2 Missense_Mutation p.R295C 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 108384262 108384262 G A EXPH5 Missense_Mutation p.P658S 0.40 deleterious(0.01) possibly_damaging(0.485) TCGA-EE-A29E-06 11 108384777 108384777 C T EXPH5 Missense_Mutation p.G486E 0.37 tolerated(1) benign(0) TCGA-EE-A29E-06 11 1095808 1095808 G A MUC2 Missense_Mutation p.D2107N 0.62 unknown(0) TCGA-EE-A29E-06 11 111739396 111739396 G A ALG9 5'UTR 0.35 TCGA-EE-A29E-06 11 111746467 111746467 G A FDXACB1 Silent p.L352L 0.36 TCGA-EE-A29E-06 11 111914232 111914232 C T DLAT Missense_Mutation p.S391F 0.34 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A29E-06 11 111914233 111914233 T C DLAT Silent p.S391S 0.34 TCGA-EE-A29E-06 11 111915933 111915933 C T DLAT Silent p.I423I 0.45 TCGA-EE-A29E-06 11 112086976 112086976 C T BCO2 Missense_Mutation p.P517S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 112089282 112089282 G A BCO2 3'UTR 0.30 TCGA-EE-A29E-06 11 113140756 113140756 G A NCAM1 Intron 0.67 TCGA-EE-A29E-06 11 113141059 113141059 G A NCAM1 Missense_Mutation p.G810R 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 11 113287637 113287637 C T DRD2 Nonsense_Mutation p.W160* 0.33 TCGA-EE-A29E-06 11 114401507 114401507 C T NXPE1 5'UTR 0.35 TCGA-EE-A29E-06 11 1156663 1156663 G A MUC5AC Splice_Site p.X227_splice 0.42 TCGA-EE-A29E-06 11 116633887 116633887 G T BUD13 Missense_Mutation p.P140T 0.39 deleterious(0.02) benign(0.12) TCGA-EE-A29E-06 11 117096732 117096732 G A PCSK7 Missense_Mutation p.R259W 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 117252422 117252422 C T CEP164 Missense_Mutation p.S472F 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A29E-06 11 117279710 117279710 C T CEP164 Silent p.S1238S 0.38 TCGA-EE-A29E-06 11 117340694 117340694 G A DSCAML1 Missense_Mutation p.P1046S 0.35 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A29E-06 11 117711058 117711058 C A FXYD6 Missense_Mutation p.V79L 0.30 tolerated(0.78) benign(0.001) TCGA-EE-A29E-06 11 117869548 117869548 A G IL10RA Missense_Mutation p.N310S 0.35 tolerated(0.12) benign(0.091) TCGA-EE-A29E-06 11 118067453 118067453 G A AMICA1 Silent p.T363T 0.40 TCGA-EE-A29E-06 11 118213363 118213363 G A CD3D 5'UTR 0.38 TCGA-EE-A29E-06 11 118255600 118255600 C T UBE4A Silent p.F791F 0.47 TCGA-EE-A29E-06 11 118277725 118277725 C T ATP5L Silent p.T42T 0.48 TCGA-EE-A29E-06 11 118516539 118516539 C T PHLDB1 Missense_Mutation p.S1168L 0.40 deleterious(0) benign(0.158) TCGA-EE-A29E-06 11 118971791 118971791 G A DPAGT1 Silent p.F73F 0.30 TCGA-EE-A29E-06 11 119056848 119056848 C T PDZD3 Missense_Mutation p.S31F 0.42 deleterious(0.03) possibly_damaging(0.888) TCGA-EE-A29E-06 11 120531015 120531015 G A GRIK4 5'UTR 0.29 TCGA-EE-A29E-06 11 120856867 120856867 C G GRIK4 Silent p.P923P 0.25 TCGA-EE-A29E-06 11 120979978 120979978 C T TECTA Missense_Mutation p.S86F 0.43 deleterious(0) benign(0.444) TCGA-EE-A29E-06 11 120999045 120999045 G A TECTA Missense_Mutation p.E787K 0.32 tolerated(0.71) benign(0.11) TCGA-EE-A29E-06 11 121037448 121037448 C T TECTA Nonsense_Mutation p.Q1849* 0.48 TCGA-EE-A29E-06 11 121060560 121060560 C T TECTA Missense_Mutation p.T2113I 0.39 deleterious_low_confidence(0.01) benign(0.054) TCGA-EE-A29E-06 11 1213148 1213148 C T MUC5AC RNA 0.27 TCGA-EE-A29E-06 11 121340715 121340715 G A SORL1 Splice_Site p.X96_splice 0.41 TCGA-EE-A29E-06 11 121391533 121391533 G A SORL1 Missense_Mutation p.G460E 0.32 tolerated(0.76) benign(0.002) TCGA-EE-A29E-06 11 121416052 121416052 C T SORL1 Silent p.T655T 0.43 TCGA-EE-A29E-06 11 1214839 1214839 G A MUC5AC RNA 0.37 TCGA-EE-A29E-06 11 121490577 121490577 C T SORL1 Missense_Mutation p.S1947F 0.36 tolerated(0.87) benign(0.02) TCGA-EE-A29E-06 11 121490578 121490578 C T SORL1 Silent p.S1947S 0.36 TCGA-EE-A29E-06 11 12245040 12245040 C T MICAL2 Missense_Mutation p.S511F 0.40 tolerated(0.09) possibly_damaging(0.797) TCGA-EE-A29E-06 11 123624612 123624612 G A OR6X1 Silent p.I205I 0.41 TCGA-EE-A29E-06 11 123777540 123777540 C T OR8D4 Silent p.V134V 0.38 TCGA-EE-A29E-06 11 123813630 123813630 C G OR6T1 Missense_Mutation p.G306R 0.43 tolerated(0.73) benign(0.001) TCGA-EE-A29E-06 11 123813631 123813631 C T OR6T1 Silent p.L305L 0.44 TCGA-EE-A29E-06 11 123893873 123893873 C T OR10G9 Missense_Mutation p.H52Y 0.40 tolerated(0.12) possibly_damaging(0.582) TCGA-EE-A29E-06 11 124121234 124121234 G A OR8G1 Intron 0.31 TCGA-EE-A29E-06 11 124135391 124135391 C T OR8G5 Silent p.S223S 0.37 TCGA-EE-A29E-06 11 124179772 124179772 C T OR8D1 Silent p.V297V 0.42 TCGA-EE-A29E-06 11 124253219 124253219 G A OR8B2 Silent p.S7S 0.21 TCGA-EE-A29E-06 11 124253220 124253220 G A OR8B2 Missense_Mutation p.S7F 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29E-06 11 124266346 124266346 C T OR8B3 Missense_Mutation p.R301K 0.31 tolerated_low_confidence(0.45) benign(0.001) TCGA-EE-A29E-06 11 124266917 124266917 C T OR8B3 Missense_Mutation p.E111K 0.41 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A29E-06 11 124413460 124413460 G A OR8B12 Silent p.L31L 0.36 TCGA-EE-A29E-06 11 124413475 124413475 G A OR8B12 Missense_Mutation p.L26F 0.35 deleterious_low_confidence(0.03) benign(0.242) TCGA-EE-A29E-06 11 124873825 124873825 T A CCDC15 Silent p.S759S 0.26 TCGA-EE-A29E-06 11 125867117 125867117 G A CDON Missense_Mutation p.R783C 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A29E-06 11 126294672 126294672 C T KIRREL3 Missense_Mutation p.G714S 0.38 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A29E-06 11 1271063 1271063 C T MUC5B Missense_Mutation p.S4318F 0.40 benign(0.153) TCGA-EE-A29E-06 11 128354878 128354878 G A ETS1 Silent p.P234P 0.46 TCGA-EE-A29E-06 11 128564129 128564129 G A FLI1 5'UTR 0.50 TCGA-EE-A29E-06 11 128709258 128709258 G A KCNJ1 Missense_Mutation p.S313F 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 11 128709480 128709480 C T KCNJ1 Missense_Mutation p.G239E 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29E-06 11 128774495 128774495 G A C11orf45 5'UTR 0.38 TCGA-EE-A29E-06 11 128843307 128843307 G A ARHGAP32 Missense_Mutation p.P1018S 0.31 tolerated_low_confidence(0.1) benign(0.062) TCGA-EE-A29E-06 11 128844405 128844405 G A ARHGAP32 Missense_Mutation p.S882F 0.35 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A29E-06 11 128850476 128850476 G A ARHGAP32 Missense_Mutation p.H636Y 0.37 deleterious(0) probably_damaging(0.984) TCGA-EE-A29E-06 11 129772410 129772410 C T PRDM10 Missense_Mutation p.G1094D 0.29 tolerated_low_confidence(0.32) possibly_damaging(0.526) TCGA-EE-A29E-06 11 130275446 130275446 C T ADAMTS8 3'UTR 0.47 TCGA-EE-A29E-06 11 130278668 130278668 C T ADAMTS8 Missense_Mutation p.A640T 0.39 tolerated(0.11) benign(0.009) TCGA-EE-A29E-06 11 130278669 130278669 C T ADAMTS8 Silent p.E639E 0.40 TCGA-EE-A29E-06 11 1311530 1311530 G A TOLLIP Missense_Mutation p.P98L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 132177686 132177686 C T NTM Silent p.P210P 0.40 TCGA-EE-A29E-06 11 132184491 132184491 C T NTM Silent p.F276F 0.48 TCGA-EE-A29E-06 11 133714482 133714482 A G SPATA19 Silent p.P63P 0.32 TCGA-EE-A29E-06 11 133714483 133714483 G A SPATA19 Missense_Mutation p.P63L 0.33 deleterious(0.01) benign(0.052) TCGA-EE-A29E-06 11 134079247 134079247 G A NCAPD3 Missense_Mutation p.S231F 0.41 deleterious(0) probably_damaging(0.986) TCGA-EE-A29E-06 11 134179545 134179545 C T GLB1L3 Silent p.F329F 0.32 TCGA-EE-A29E-06 11 134241693 134241693 C T GLB1L2 Silent p.N492N 0.47 TCGA-EE-A29E-06 11 13514345 13514345 G A PTH Missense_Mutation p.L20F 0.41 tolerated(0.68) benign(0.038) TCGA-EE-A29E-06 11 1586989 1586989 C T DUSP8 Missense_Mutation p.G23E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 16071265 16071265 C T SOX6 Intron 0.36 TCGA-EE-A29E-06 11 16071343 16071343 G A SOX6 Missense_Mutation p.P465S 0.46 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A29E-06 11 1629158 1629158 G A KRTAP5-3 Missense_Mutation p.P153L 0.36 deleterious(0) unknown(0) TCGA-EE-A29E-06 11 17135978 17135978 G A PIK3C2A Missense_Mutation p.S1084F 0.39 tolerated(0.69) benign(0.27) TCGA-EE-A29E-06 11 17140836 17140836 G A PIK3C2A Silent p.S957S 0.30 TCGA-EE-A29E-06 11 17426127 17426127 G A ABCC8 Silent p.F1163F 0.35 TCGA-EE-A29E-06 11 17436075 17436075 G A ABCC8 Missense_Mutation p.P792S 0.41 tolerated(0.12) possibly_damaging(0.823) TCGA-EE-A29E-06 11 17542432 17542432 G A USH1C Missense_Mutation p.L399F 0.47 tolerated_low_confidence(0.08) possibly_damaging(0.515) TCGA-EE-A29E-06 11 17542541 17542541 C T USH1C Silent p.Q362Q 0.33 TCGA-EE-A29E-06 11 17542924 17542924 C T USH1C Missense_Mutation p.E352K 0.39 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EE-A29E-06 11 17552965 17552965 G A USH1C Silent p.L77L 0.44 TCGA-EE-A29E-06 11 17553056 17553056 C T USH1C Silent p.L46L 0.40 TCGA-EE-A29E-06 11 17793712 17793712 G A KCNC1 Silent p.L357L 0.42 TCGA-EE-A29E-06 11 1856293 1856293 C T SYT8 Intron 0.55 TCGA-EE-A29E-06 11 1858596 1858596 G A SYT8 Missense_Mutation p.E381K 0.48 deleterious(0.02) possibly_damaging(0.455) TCGA-EE-A29E-06 11 18955396 18955396 G A MRGPRX1 Silent p.I312I 0.36 TCGA-EE-A29E-06 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.23 TCGA-EE-A29E-06 11 1908760 1908760 G A LSP1 Silent p.E457E 0.35 TCGA-EE-A29E-06 11 19204265 19204265 C T CSRP3 Silent p.T179T 0.47 TCGA-EE-A29E-06 11 1972180 1972180 C G MRPL23 Missense_Mutation p.N23K 0.38 deleterious(0.04) benign(0.033) TCGA-EE-A29E-06 11 2189730 2189730 C T TH Missense_Mutation p.G191R 0.29 tolerated(0.13) benign(0.028) TCGA-EE-A29E-06 11 22301201 22301201 G A ANO5 Missense_Mutation p.D878N 0.41 tolerated(0.24) possibly_damaging(0.867) TCGA-EE-A29E-06 11 22301266 22301266 C A ANO5 Silent p.V899V 0.48 TCGA-EE-A29E-06 11 22387233 22387233 G A SLC17A6 Missense_Mutation p.E297K 0.29 tolerated(0.9) benign(0.009) TCGA-EE-A29E-06 11 22399064 22399064 G A SLC17A6 Silent p.E509E 0.37 TCGA-EE-A29E-06 11 2433995 2433995 C T TRPM5 Missense_Mutation p.E782K 0.89 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 11 26587249 26587249 C T MUC15 Missense_Mutation p.A80T 0.51 tolerated_low_confidence(0.43) benign(0.001) TCGA-EE-A29E-06 11 26620542 26620542 C T ANO3 Silent p.F556F 0.39 TCGA-EE-A29E-06 11 26655756 26655756 C T ANO3 Missense_Mutation p.P627S 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29E-06 11 27679990 27679990 C T BDNF Missense_Mutation p.G123E 0.44 tolerated(0.16) probably_damaging(0.998) TCGA-EE-A29E-06 11 27679991 27679991 C T BDNF Missense_Mutation p.G123R 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A29E-06 11 28058204 28058204 A C KIF18A Silent p.S652S 0.49 TCGA-EE-A29E-06 11 2929491 2929491 C G SLC22A18 Missense_Mutation p.S58C 0.37 deleterious(0) probably_damaging(0.967) TCGA-EE-A29E-06 11 30032619 30032619 C T KCNA4 Missense_Mutation p.G536E 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 11 30032811 30032811 C T KCNA4 Missense_Mutation p.R472K 0.26 tolerated(1) benign(0.047) TCGA-EE-A29E-06 11 30033653 30033653 C T KCNA4 Missense_Mutation p.M191I 0.38 deleterious(0.01) benign(0.023) TCGA-EE-A29E-06 11 30255338 30255338 G A FSHB Missense_Mutation p.M127I 0.38 tolerated(0.34) benign(0) TCGA-EE-A29E-06 11 30902777 30902777 G A DCDC1 Nonsense_Mutation p.Q1718* 0.45 TCGA-EE-A29E-06 11 30928197 30928197 C T DCDC1 Missense_Mutation p.E1332K 0.36 tolerated(0.48) possibly_damaging(0.486) TCGA-EE-A29E-06 11 30946894 30946894 C T DCDC1 Missense_Mutation p.E987K 0.38 deleterious(0) possibly_damaging(0.486) TCGA-EE-A29E-06 11 32414222 32414222 C T WT1 Silent p.R443R 0.34 TCGA-EE-A29E-06 11 32781685 32781685 C T CCDC73 Silent p.L35L 0.33 TCGA-EE-A29E-06 11 32979608 32979608 C T QSER1 Missense_Mutation p.H1520Y 0.53 tolerated(0.49) possibly_damaging(0.745) TCGA-EE-A29E-06 11 33880941 33880941 C T LMO2 Silent p.Q215Q 0.37 TCGA-EE-A29E-06 11 35463162 35463162 G A PAMR1 Silent p.I317I 0.46 TCGA-EE-A29E-06 11 36596859 36596859 G A RAG1 Missense_Mutation p.E669K 0.48 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-EE-A29E-06 11 3735138 3735138 G A NUP98 Silent p.I829I 0.47 TCGA-EE-A29E-06 11 40137831 40137831 C T LRRC4C Silent p.K4K 0.42 TCGA-EE-A29E-06 11 4406760 4406760 G A TRIM21 Nonsense_Mutation p.Q395* 0.50 TCGA-EE-A29E-06 11 44146474 44146474 C T EXT2 Silent p.V326V 0.33 TCGA-EE-A29E-06 11 44219521 44219521 C T EXT2 Missense_Mutation p.S516F 0.29 deleterious(0.02) benign(0.419) TCGA-EE-A29E-06 11 4470716 4470716 C T OR52K2 Silent p.L49L 0.34 TCGA-EE-A29E-06 11 4510453 4510453 C T OR52K1 Missense_Mutation p.S108F 0.42 tolerated(0.12) probably_damaging(0.957) TCGA-EE-A29E-06 11 45935740 45935740 G A PEX16 Silent p.L237L 0.36 TCGA-EE-A29E-06 11 45947834 45947834 G A GYLTL1B Nonsense_Mutation p.W315* 0.40 TCGA-EE-A29E-06 11 45955695 45955695 G T PHF21A Missense_Mutation p.R623S 0.09 deleterious(0) probably_damaging(0.951) TCGA-EE-A29E-06 11 4621703 4621703 G A TRIM68 Missense_Mutation p.R421C 0.21 deleterious(0.02) benign(0.135) TCGA-EE-A29E-06 11 46388891 46388891 C T DGKZ Missense_Mutation p.T260I 0.44 tolerated(0.09) benign(0.016) TCGA-EE-A29E-06 11 4703695 4703695 G A OR51E2 Missense_Mutation p.L83F 0.34 deleterious(0.05) benign(0.003) TCGA-EE-A29E-06 11 47350616 47350616 C T MADD Missense_Mutation p.S1620F 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 11 47436074 47436074 C T SLC39A13 Intron 0.44 TCGA-EE-A29E-06 11 47445718 47445718 G A PSMC3 Missense_Mutation p.S157F 0.36 deleterious(0.01) benign(0.043) TCGA-EE-A29E-06 11 47690428 47690428 C T AGBL2 Missense_Mutation p.G727S 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29E-06 11 48238673 48238673 C T OR4B1 Silent p.F104F 0.40 TCGA-EE-A29E-06 11 4825705 4825705 G A OR52R1 5'Flank 0.33 TCGA-EE-A29E-06 11 48328686 48328686 G A OR4S1 Silent p.R304R 0.43 TCGA-EE-A29E-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.37 TCGA-EE-A29E-06 11 48346951 48346951 G A OR4C3 Silent p.K153K 0.31 TCGA-EE-A29E-06 11 4843444 4843444 C T OR51F2 Missense_Mutation p.R277C 0.43 deleterious(0.01) benign(0.041) TCGA-EE-A29E-06 11 4869890 4869890 G A OR51S1 Silent p.T183T 0.30 TCGA-EE-A29E-06 11 4928611 4928611 C T OR51A7 Silent p.L4L 0.54 TCGA-EE-A29E-06 11 4929091 4929091 G A OR51A7 Silent p.R164R 0.38 TCGA-EE-A29E-06 11 4967778 4967778 C T OR51A4 Missense_Mutation p.D185N 0.08 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A29E-06 11 4968016 4968016 G A OR51A4 Silent p.F105F 0.36 TCGA-EE-A29E-06 11 4976391 4976391 C T OR51A2 Missense_Mutation p.D185N 0.57 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A29E-06 11 49805494 49805494 C T RP11-707M1.1 RNA 0.57 TCGA-EE-A29E-06 11 49805495 49805495 T G RP11-707M1.1 RNA 0.52 TCGA-EE-A29E-06 11 49831596 49831596 C T RP11-707M1.1 RNA 0.40 TCGA-EE-A29E-06 11 49974138 49974138 C T OR4C13 Missense_Mutation p.S55F 0.38 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-EE-A29E-06 11 49974880 49974880 G A OR4C13 Silent p.R302R 0.61 TCGA-EE-A29E-06 11 50003373 50003373 G A OR4C12 Missense_Mutation p.S222F 0.44 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-EE-A29E-06 11 50003708 50003708 G A OR4C12 Silent p.I110I 0.41 TCGA-EE-A29E-06 11 5009424 5009424 G A MMP26 5'UTR 0.52 TCGA-EE-A29E-06 11 5011062 5011062 G A MMP26 Missense_Mutation p.G95E 0.41 tolerated(0.21) benign(0.012) TCGA-EE-A29E-06 11 5012670 5012670 G A MMP26 Missense_Mutation p.G180E 0.45 tolerated(0.5) benign(0.002) TCGA-EE-A29E-06 11 5067961 5067961 C T OR52J3 Missense_Mutation p.S69F 0.36 deleterious(0) probably_damaging(0.977) TCGA-EE-A29E-06 11 5068338 5068338 C T OR52J3 Missense_Mutation p.R195C 0.44 deleterious(0.01) benign(0.047) TCGA-EE-A29E-06 11 51515761 51515761 C T OR4C46 Silent p.F160F 0.44 TCGA-EE-A29E-06 11 5153391 5153391 G A OR52A5 Missense_Mutation p.S161F 0.43 tolerated(0.82) benign(0.009) TCGA-EE-A29E-06 11 5221079 5221079 G A OR51V1 Silent p.L284L 0.40 TCGA-EE-A29E-06 11 5254151 5254151 G A HBD 3'UTR 0.32 TCGA-EE-A29E-06 11 5322356 5322356 C T OR51B4 Missense_Mutation p.S274N 0.35 deleterious(0.02) benign(0.33) TCGA-EE-A29E-06 11 5364248 5364248 G A OR51B5 Silent p.S169S 0.37 TCGA-EE-A29E-06 11 5373184 5373184 G A OR51B6 Silent p.R149R 0.45 TCGA-EE-A29E-06 11 5373349 5373349 G A OR51B6 Missense_Mutation p.M204I 0.41 tolerated(0.17) benign(0.004) TCGA-EE-A29E-06 11 5444354 5444354 C T OR51Q1 Silent p.F308F 0.62 TCGA-EE-A29E-06 11 5462550 5462550 G A OR51I1 Silent p.L65L 0.33 TCGA-EE-A29E-06 11 55038550 55038550 C T TRIM48 3'UTR 0.50 TCGA-EE-A29E-06 11 55063165 55063165 T A TRIM51HP Intron 0.40 TCGA-EE-A29E-06 11 55111121 55111121 G A OR4A16 Missense_Mutation p.G149R 0.39 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-EE-A29E-06 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.41 TCGA-EE-A29E-06 11 5529560 5529560 G A UBQLN3 Missense_Mutation p.P410L 0.41 deleterious(0) probably_damaging(0.933) TCGA-EE-A29E-06 11 5530056 5530056 C T UBQLN3 Missense_Mutation p.E245K 0.34 deleterious(0) possibly_damaging(0.497) TCGA-EE-A29E-06 11 55322523 55322523 C T OR4C15 Silent p.I247I 0.30 TCGA-EE-A29E-06 11 55340049 55340049 G A OR4C16 Missense_Mutation p.G149E 0.36 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 11 55340247 55340247 C T OR4C16 Missense_Mutation p.S215F 0.40 deleterious(0) probably_damaging(0.992) TCGA-EE-A29E-06 11 55371018 55371018 G A OR4C11 Missense_Mutation p.P278S 0.56 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A29E-06 11 55541241 55541241 G A OR5D13 Missense_Mutation p.G110R 0.44 deleterious(0) benign(0.243) TCGA-EE-A29E-06 11 55541597 55541597 G A OR5D13 Missense_Mutation p.M228I 0.45 tolerated(0.53) benign(0.001) TCGA-EE-A29E-06 11 55563790 55563790 C T OR5D14 Silent p.F253F 0.42 TCGA-EE-A29E-06 11 55578952 55578952 G A OR5L1 Missense_Mutation p.E4K 0.39 tolerated(0.18) benign(0.005) TCGA-EE-A29E-06 11 55587576 55587576 C T OR5D18 Silent p.S157S 0.47 TCGA-EE-A29E-06 11 55606540 55606540 T A OR5D16 Missense_Mutation p.F105I 0.40 deleterious(0.03) benign(0.056) TCGA-EE-A29E-06 11 5566283 5566283 G A OR52H1 Silent p.S157S 0.54 TCGA-EE-A29E-06 11 55735717 55735717 C T OR10AG1 Missense_Mutation p.D75N 0.33 tolerated(0.86) benign(0.014) TCGA-EE-A29E-06 11 55761196 55761196 C T OR5F1 Silent p.A302A 0.32 TCGA-EE-A29E-06 11 55860955 55860955 C T OR8I2 Missense_Mutation p.P58S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29E-06 11 558870 558870 G A C11orf35 Silent p.C48C 0.31 TCGA-EE-A29E-06 11 55927440 55927440 C T OR8K5 Missense_Mutation p.M118I 0.38 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-EE-A29E-06 11 56020179 56020179 C T OR5T3 Silent p.P168P 0.37 TCGA-EE-A29E-06 11 56230088 56230088 C T OR5M9 Missense_Mutation p.E264K 0.38 tolerated(0.69) benign(0.047) TCGA-EE-A29E-06 11 563473 563473 C T RASSF7 Silent p.P343P 0.33 TCGA-EE-A29E-06 11 56380594 56380594 G A OR5M1 Missense_Mutation p.P129S 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 11 56510579 56510579 G A OR9G4 Missense_Mutation p.L237F 0.33 tolerated(0.33) benign(0.02) TCGA-EE-A29E-06 11 56949644 56949644 G A LRRC55 Missense_Mutation p.D93N 0.50 tolerated(0.11) probably_damaging(0.993) TCGA-EE-A29E-06 11 56949683 56949683 C T LRRC55 Silent p.L106L 0.50 TCGA-EE-A29E-06 11 5730469 5730469 G A TRIM22 Missense_Mutation p.G363E 0.32 tolerated(0.44) benign(0.009) TCGA-EE-A29E-06 11 57317475 57317475 G A SMTNL1 Missense_Mutation p.D477N 0.34 deleterious(0) probably_damaging(0.939) TCGA-EE-A29E-06 11 5776234 5776234 G A OR52N4 Nonsense_Mutation p.W88* 0.45 TCGA-EE-A29E-06 11 57798955 57798955 C T OR6Q1 Silent p.V177V 0.34 TCGA-EE-A29E-06 11 57947699 57947699 T A OR9Q1 Silent p.G261G 0.41 TCGA-EE-A29E-06 11 57958532 57958532 G A OR9Q2 Silent p.G190G 0.49 TCGA-EE-A29E-06 11 57982549 57982549 C T OR1S1 Silent p.I111I 0.35 TCGA-EE-A29E-06 11 57996005 57996005 C T OR10Q1 Missense_Mutation p.D115N 0.40 deleterious(0.01) benign(0.242) TCGA-EE-A29E-06 11 5799757 5799757 G A OR52N5 Silent p.S36S 0.41 TCGA-EE-A29E-06 11 58035120 58035120 G A OR10W1 Missense_Mutation p.H71Y 0.50 tolerated(0.06) possibly_damaging(0.661) TCGA-EE-A29E-06 11 5809377 5809377 G A OR52N1 Missense_Mutation p.L224F 0.34 deleterious(0.02) benign(0.208) TCGA-EE-A29E-06 11 58170303 58170303 C T OR5B3 Missense_Mutation p.E194K 0.50 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-EE-A29E-06 11 5862851 5862851 C T OR52E6 Missense_Mutation p.E93K 0.41 tolerated(0.06) benign(0.075) TCGA-EE-A29E-06 11 58723328 58723328 G A GLYATL1 Missense_Mutation p.R277Q 0.41 tolerated(0.79) benign(0.001) TCGA-EE-A29E-06 11 58949302 58949302 C T DTX4 Missense_Mutation p.S101F 0.35 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A29E-06 11 58979245 58979245 T G MPEG1 Missense_Mutation p.D365A 0.37 deleterious(0) possibly_damaging(0.452) TCGA-EE-A29E-06 11 5905749 5905749 C T OR52E4 Missense_Mutation p.S76F 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A29E-06 11 59132169 59132169 C T OR5AN1 Missense_Mutation p.P80S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 59224979 59224979 C T OR4D6 Silent p.L182L 0.50 TCGA-EE-A29E-06 11 59245604 59245604 G A OR4D10 Silent p.R234R 0.42 TCGA-EE-A29E-06 11 59245693 59245693 C T OR4D10 Missense_Mutation p.A264V 0.38 deleterious(0.02) benign(0.049) TCGA-EE-A29E-06 11 59425140 59425140 G A PATL1 Missense_Mutation p.P162S 0.46 tolerated(0.78) benign(0.053) TCGA-EE-A29E-06 11 5968624 5968624 C T OR56A3 Silent p.F16F 0.32 TCGA-EE-A29E-06 11 5968696 5968696 C T OR56A3 Silent p.L40L 0.41 TCGA-EE-A29E-06 11 60059814 60059814 G A MS4A4A Missense_Mutation p.G53E 0.46 tolerated(0.83) benign(0.027) TCGA-EE-A29E-06 11 6023832 6023832 G A OR56A4 Missense_Mutation p.H183Y 0.52 tolerated(0.41) benign(0.049) TCGA-EE-A29E-06 11 6023833 6023833 G A OR56A4 Silent p.C182C 0.52 TCGA-EE-A29E-06 11 6024001 6024001 G A OR56A4 Silent p.I126I 0.43 TCGA-EE-A29E-06 11 60558557 60558557 G A MS4A10 Silent p.G98G 0.44 TCGA-EE-A29E-06 11 60637362 60637362 G A ZP1 Missense_Mutation p.R224Q 0.37 tolerated(0.35) benign(0) TCGA-EE-A29E-06 11 60638726 60638726 G A ZP1 Missense_Mutation p.V351M 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A29E-06 11 60689495 60689495 C T TMEM109 Missense_Mutation p.A197V 0.49 tolerated(0.36) possibly_damaging(0.834) TCGA-EE-A29E-06 11 60701033 60701033 C T TMEM132A Missense_Mutation p.A460V 0.33 tolerated(0.25) benign(0.138) TCGA-EE-A29E-06 11 61120466 61120466 A G CYB561A3 Missense_Mutation p.F197S 0.34 deleterious(0) probably_damaging(0.918) TCGA-EE-A29E-06 11 61135218 61135218 C T TMEM138 Intron 0.71 TCGA-EE-A29E-06 11 6129543 6129543 G A OR56B4 Missense_Mutation p.E179K 0.45 tolerated(0.49) benign(0.232) TCGA-EE-A29E-06 11 618097 618097 C T CDHR5 Missense_Mutation p.E659K 0.35 tolerated(0.36) benign(0.399) TCGA-EE-A29E-06 11 6190685 6190685 G A OR52B2 Missense_Mutation p.P291L 0.46 deleterious(0) benign(0.113) TCGA-EE-A29E-06 11 62284544 62284544 G A AHNAK Missense_Mutation p.S5782L 0.45 probably_damaging(0.999) TCGA-EE-A29E-06 11 62284730 62284730 G A AHNAK Missense_Mutation p.S5720F 0.42 probably_damaging(0.999) TCGA-EE-A29E-06 11 62296503 62296503 T A AHNAK Nonsense_Mutation p.K1796* 0.42 TCGA-EE-A29E-06 11 62760970 62760970 C T SLC22A8 Silent p.G485G 0.38 TCGA-EE-A29E-06 11 62931311 62931311 C T SLC22A25 Silent p.R543R 0.45 TCGA-EE-A29E-06 11 62996862 62996862 C T SLC22A25 Missense_Mutation p.C88Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 11 63057907 63057907 C T SLC22A10 Silent p.R90R 0.32 TCGA-EE-A29E-06 11 63065146 63065146 A C SLC22A10 Missense_Mutation p.Q259H 0.34 tolerated(0.89) benign(0.002) TCGA-EE-A29E-06 11 63230915 63230915 G A HRASLS5 3'UTR 0.51 TCGA-EE-A29E-06 11 63230976 63230976 C T HRASLS5 Silent p.%3D 0.29 TCGA-EE-A29E-06 11 63671580 63671580 T G MARK2 Missense_Mutation p.L546R 0.50 tolerated(0.08) benign(0.018) TCGA-EE-A29E-06 11 63672372 63672372 C T MARK2 Silent p.F597F 0.35 TCGA-EE-A29E-06 11 64056676 64056676 C T GPR137 Missense_Mutation p.P423S 0.47 tolerated_low_confidence(0.44) benign(0.02) TCGA-EE-A29E-06 11 64119691 64119691 C T CCDC88B Silent p.S1063S 0.40 TCGA-EE-A29E-06 11 64508499 64508499 C T RASGRP2 Missense_Mutation p.E98K 0.47 tolerated(0.08) benign(0.439) TCGA-EE-A29E-06 11 64518027 64518027 C T PYGM Silent p.Q666Q 0.36 TCGA-EE-A29E-06 11 64662858 64662858 G A ATG2A Silent p.S1828S 0.52 TCGA-EE-A29E-06 11 64678737 64678737 G A ATG2A Silent p.A413A 0.42 TCGA-EE-A29E-06 11 64899811 64899811 G A SYVN1 Missense_Mutation p.L147F 0.35 tolerated(0.11) benign(0.099) TCGA-EE-A29E-06 11 64900474 64900474 G A SYVN1 Silent p.F99F 0.24 TCGA-EE-A29E-06 11 65124164 65124164 C T TIGD3 Silent p.P295P 0.35 TCGA-EE-A29E-06 11 66190194 66190194 G A NPAS4 Silent p.Q160Q 0.46 TCGA-EE-A29E-06 11 66358741 66358741 G A CCDC87 Silent p.A582A 0.36 TCGA-EE-A29E-06 11 6637259 6637259 G A TPP1 Silent p.F374F 0.49 TCGA-EE-A29E-06 11 66834276 66834276 C T RHOD Silent p.F96F 0.40 TCGA-EE-A29E-06 11 67164708 67164708 G A RAD9A Missense_Mutation p.E311K 0.24 tolerated(0.16) probably_damaging(0.971) TCGA-EE-A29E-06 11 67220040 67220040 C T GPR152 Nonsense_Mutation p.W52* 0.42 TCGA-EE-A29E-06 11 67288549 67288549 G A CABP2 Missense_Mutation p.T109I 0.37 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 11 67399057 67399057 C T TBX10 3'UTR 0.25 TCGA-EE-A29E-06 11 6789889 6789889 C T OR2AG2 Silent p.Q100Q 0.36 TCGA-EE-A29E-06 11 68312445 68312445 T A PPP6R3 Missense_Mutation p.F123I 0.33 deleterious(0) benign(0.379) TCGA-EE-A29E-06 11 6891759 6891759 G A OR10A2 Silent p.K258K 0.40 TCGA-EE-A29E-06 11 6953620 6953620 G A ZNF215 Silent p.V39V 0.36 TCGA-EE-A29E-06 11 6953622 6953622 A T ZNF215 Missense_Mutation p.E40V 0.35 deleterious(0) possibly_damaging(0.617) TCGA-EE-A29E-06 11 70331836 70331836 G A SHANK2 Missense_Mutation p.S1522F 0.46 deleterious(0) possibly_damaging(0.485) TCGA-EE-A29E-06 11 7111038 7111038 G A RBMXL2 Silent p.R229R 0.67 TCGA-EE-A29E-06 11 72379372 72379372 C T PDE2A Intron 0.35 TCGA-EE-A29E-06 11 72408231 72408231 G A ARAP1 Missense_Mutation p.S988F 0.39 tolerated(0.06) probably_damaging(0.99) TCGA-EE-A29E-06 11 7324533 7324533 C T SYT9 Missense_Mutation p.P137S 0.55 deleterious(0.01) benign(0.024) TCGA-EE-A29E-06 11 7334794 7334794 G A SYT9 Silent p.G222G 0.37 TCGA-EE-A29E-06 11 73714897 73714897 C T UCP3 Missense_Mutation p.E267K 0.46 deleterious(0.03) possibly_damaging(0.536) TCGA-EE-A29E-06 11 73716890 73716890 G A UCP3 Silent p.V142V 0.25 TCGA-EE-A29E-06 11 74415687 74415687 C T CHRDL2 Missense_Mutation p.D199N 0.54 tolerated(0.13) possibly_damaging(0.839) TCGA-EE-A29E-06 11 74429817 74429817 G A CHRDL2 Missense_Mutation p.P48L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 74800530 74800530 G A OR2AT4 Missense_Mutation p.L77F 0.56 tolerated(0.3) benign(0.098) TCGA-EE-A29E-06 11 75279855 75279855 C T SERPINH1 Silent p.V234V 0.42 TCGA-EE-A29E-06 11 76207326 76207326 C T C11orf30 Silent p.A392A 0.48 TCGA-EE-A29E-06 11 76371022 76371022 C T LRRC32 Missense_Mutation p.E539K 0.37 deleterious(0) probably_damaging(0.954) TCGA-EE-A29E-06 11 76980047 76980047 C T GDPD4 Silent p.G182G 0.45 TCGA-EE-A29E-06 11 7721935 7721935 C T OVCH2 Missense_Mutation p.R270K 0.57 tolerated(0.95) benign(0.017) TCGA-EE-A29E-06 11 77734242 77734242 G A KCTD14 Silent p.T18T 0.44 TCGA-EE-A29E-06 11 77823783 77823783 G A ALG8 Missense_Mutation p.P271S 0.37 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 11 78443566 78443566 G A TENM4 Missense_Mutation p.P978L 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 11 7846909 7846909 C T OR5P3 Missense_Mutation p.G204E 0.36 deleterious(0) probably_damaging(0.973) TCGA-EE-A29E-06 11 7949824 7949824 G A OR10A6 Missense_Mutation p.P129L 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29E-06 11 7981729 7981729 G A NLRP10 Missense_Mutation p.S477F 0.42 tolerated(1) benign(0.138) TCGA-EE-A29E-06 11 802267 802267 G A PIDD Silent p.V368V 0.25 TCGA-EE-A29E-06 11 829389 829389 G A EFCAB4A Missense_Mutation p.G103R 0.40 deleterious(0.04) benign(0.219) TCGA-EE-A29E-06 11 83497758 83497758 C T DLG2 Silent p.T600T 0.21 TCGA-EE-A29E-06 11 83585526 83585526 G A DLG2 Missense_Mutation p.S501F 0.24 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A29E-06 11 85593607 85593607 G A CCDC83 Missense_Mutation p.E78K 0.35 tolerated(0.13) possibly_damaging(0.833) TCGA-EE-A29E-06 11 85630572 85630572 A T CCDC83 3'UTR 0.41 TCGA-EE-A29E-06 11 86123497 86123497 C T CCDC81 Silent p.S429S 0.34 TCGA-EE-A29E-06 11 86157481 86157481 C T ME3 Missense_Mutation p.E477K 0.47 tolerated(0.81) benign(0.01) TCGA-EE-A29E-06 11 86665987 86665987 G A FZD4 Silent p.P47P 0.35 TCGA-EE-A29E-06 11 89135619 89135619 C T NOX4 Missense_Mutation p.E241K 0.39 tolerated(0.88) benign(0.001) TCGA-EE-A29E-06 11 89166022 89166022 G A NOX4 Missense_Mutation p.P160S 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A29E-06 11 89392811 89392811 C T FOLH1B RNA 0.26 TCGA-EE-A29E-06 11 89403637 89403637 G A FOLH1B RNA 0.37 TCGA-EE-A29E-06 11 89891358 89891358 G A NAALAD2 Missense_Mutation p.R281Q 0.37 tolerated(0.18) benign(0) TCGA-EE-A29E-06 11 90602344 90602344 C T MIR1261 RNA 0.45 TCGA-EE-A29E-06 11 9161242 9161242 G A DENND5A Silent p.S1280S 0.42 TCGA-EE-A29E-06 11 92085336 92085336 C T FAT3 Missense_Mutation p.L20F 0.41 benign(0.001) TCGA-EE-A29E-06 11 92086077 92086077 C T FAT3 Missense_Mutation p.H267Y 0.36 benign(0.044) TCGA-EE-A29E-06 11 92086695 92086695 C T FAT3 Nonsense_Mutation p.Q473* 0.38 TCGA-EE-A29E-06 11 92523162 92523162 G A FAT3 Silent p.P1463P 0.35 TCGA-EE-A29E-06 11 92534972 92534972 G A FAT3 Silent p.G2931G 0.36 TCGA-EE-A29E-06 11 92565151 92565151 G A FAT3 Missense_Mutation p.G3282E 0.31 possibly_damaging(0.612) TCGA-EE-A29E-06 11 93170756 93170756 C T CCDC67 Silent p.F562F 0.36 TCGA-EE-A29E-06 11 93911662 93911662 A T PANX1 Missense_Mutation p.Y150F 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 11 94113903 94113903 G A GPR83 Silent p.F228F 0.39 TCGA-EE-A29E-06 11 94163119 94163119 G A MRE11A Silent p.S676S 0.36 TCGA-EE-A29E-06 11 94696570 94696570 T A CWC15 Missense_Mutation p.M223L 0.39 tolerated(0.16) possibly_damaging(0.557) TCGA-EE-A29E-06 11 99690344 99690344 C T CNTN5 Missense_Mutation p.S42F 0.16 tolerated_low_confidence(0.1) benign(0.259) TCGA-EE-A29E-06 12 100042316 100042316 C T FAM71C Missense_Mutation p.P122S 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A29E-06 12 100796200 100796200 G A SLC17A8 Silent p.E282E 0.30 TCGA-EE-A29E-06 12 101012316 101012316 C T GAS2L3 Missense_Mutation p.S200F 0.41 deleterious(0) possibly_damaging(0.781) TCGA-EE-A29E-06 12 101436175 101436175 C T ANO4 Silent p.L326L 0.37 TCGA-EE-A29E-06 12 101436176 101436176 T A ANO4 Missense_Mutation p.F327I 0.35 tolerated(0.8) benign(0.013) TCGA-EE-A29E-06 12 101588903 101588903 C T SLC5A8 Silent p.T169T 0.31 TCGA-EE-A29E-06 12 101603484 101603484 C T SLC5A8 Missense_Mutation p.G48D 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 12 101711290 101711290 C A UTP20 Missense_Mutation p.P863T 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 12 10223953 10223953 T G CLEC1A Missense_Mutation p.E274D 0.36 tolerated_low_confidence(0.06) benign(0.131) TCGA-EE-A29E-06 12 102590870 102590870 C T PMCH Missense_Mutation p.G110E 0.38 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 12 102811486 102811486 C T IGF1 3'UTR 0.48 TCGA-EE-A29E-06 12 102869512 102869512 G A IGF1 Silent p.T43T 0.29 TCGA-EE-A29E-06 12 104046430 104046430 G A STAB2 Missense_Mutation p.D452N 0.41 tolerated(0.38) benign(0.212) TCGA-EE-A29E-06 12 104105273 104105273 G A STAB2 Missense_Mutation p.G1438E 0.40 tolerated(0.09) possibly_damaging(0.462) TCGA-EE-A29E-06 12 104327797 104327797 T C HSP90B1 Silent p.L159L 0.41 TCGA-EE-A29E-06 12 104496938 104496942 ACATC - HCFC2 Frame_Shift_Del p.T756Qfs*13 0.32 TCGA-EE-A29E-06 12 10530807 10530807 G A KLRK1 Missense_Mutation p.H153Y 0.40 tolerated(0.2) possibly_damaging(0.578) TCGA-EE-A29E-06 12 10560950 10560950 G A KLRC4 Silent p.S106S 0.48 TCGA-EE-A29E-06 12 106461376 106461376 G C NUAK1 Missense_Mutation p.P397R 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 12 106708261 106708261 C T TCP11L2 Missense_Mutation p.P95S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 106804625 106804625 G A POLR3B Missense_Mutation p.A330T 0.36 tolerated(0.33) benign(0.003) TCGA-EE-A29E-06 12 108051355 108051355 G A BTBD11 Missense_Mutation p.E1059K 0.38 deleterious(0.05) probably_damaging(0.993) TCGA-EE-A29E-06 12 108603899 108603899 G A WSCD2 Missense_Mutation p.G167S 0.53 tolerated(0.28) possibly_damaging(0.565) TCGA-EE-A29E-06 12 108930558 108930558 G A SART3 Missense_Mutation p.S438F 0.38 deleterious(0.04) possibly_damaging(0.773) TCGA-EE-A29E-06 12 108985219 108985219 G C TMEM119 3'UTR 0.41 TCGA-EE-A29E-06 12 109292555 109292555 C T DAO Silent p.L266L 0.27 TCGA-EE-A29E-06 12 109294211 109294211 G A DAO Missense_Mutation p.G315E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 109530456 109530456 G A ALKBH2 Missense_Mutation p.P46S 0.38 tolerated_low_confidence(0.41) benign(0.002) TCGA-EE-A29E-06 12 110370692 110370692 C T GIT2 3'UTR 0.33 TCGA-EE-A29E-06 12 110489039 110489039 G A C12orf76 Intron 0.48 TCGA-EE-A29E-06 12 110656105 110656105 T C IFT81 3'UTR 0.56 TCGA-EE-A29E-06 12 111162533 111162533 A C PPP1CC Missense_Mutation p.F152C 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 12 111729321 111729321 C T CUX2 Missense_Mutation p.S134L 0.48 tolerated(0.34) benign(0.001) TCGA-EE-A29E-06 12 111744859 111744859 C A CUX2 Silent p.S331S 0.38 TCGA-EE-A29E-06 12 112187039 112187039 C T ACAD10 Missense_Mutation p.P934S 0.45 tolerated(0.23) probably_damaging(0.996) TCGA-EE-A29E-06 12 112610513 112610513 G A HECTD4 Missense_Mutation p.P3770L 0.37 benign(0.002) TCGA-EE-A29E-06 12 113344866 113344866 C T OAS1 Missense_Mutation p.P8S 0.45 tolerated(0.06) benign(0.416) TCGA-EE-A29E-06 12 113357191 113357191 C T OAS1 Intron 0.48 TCGA-EE-A29E-06 12 113543543 113543543 G T RASAL1 Silent p.S603S 0.30 TCGA-EE-A29E-06 12 113544974 113544974 G A RASAL1 Missense_Mutation p.P530S 0.29 tolerated(0.06) possibly_damaging(0.615) TCGA-EE-A29E-06 12 113544998 113544998 C T RASAL1 Missense_Mutation p.E522K 0.30 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A29E-06 12 113552637 113552637 C T RASAL1 Silent p.L383L 0.29 TCGA-EE-A29E-06 12 11420362 11420362 C T PRB3 Missense_Mutation p.G232E 0.37 tolerated(0.32) unknown(0) TCGA-EE-A29E-06 12 11546143 11546143 C T PRB2 Missense_Mutation p.G290E 0.45 deleterious(0.05) unknown(0) TCGA-EE-A29E-06 12 11546144 11546144 C T PRB2 Missense_Mutation p.G290R 0.43 tolerated(0.05) unknown(0) TCGA-EE-A29E-06 12 11546267 11546267 C T PRB2 Missense_Mutation p.G249R 0.31 deleterious(0.03) unknown(0) TCGA-EE-A29E-06 12 11546698 11546698 C T PRB2 Missense_Mutation p.G105E 0.27 deleterious(0) unknown(0) TCGA-EE-A29E-06 12 117462048 117462048 C T FBXW8 Silent p.I488I 0.38 TCGA-EE-A29E-06 12 117660561 117660561 C T NOS1 Missense_Mutation p.E1346K 0.36 tolerated(0.28) probably_damaging(0.969) TCGA-EE-A29E-06 12 117672539 117672539 G A NOS1 Silent p.L1056L 0.23 TCGA-EE-A29E-06 12 117768576 117768576 G A NOS1 Missense_Mutation p.P100L 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29E-06 12 117768979 117768979 G A NOS1 5'Flank 0.44 TCGA-EE-A29E-06 12 117962846 117962846 A G KSR2 Missense_Mutation p.F677S 0.38 deleterious(0) probably_damaging(0.94) TCGA-EE-A29E-06 12 119942885 119942885 C T CCDC60 Silent p.F220F 0.43 TCGA-EE-A29E-06 12 119968742 119968742 C T CCDC60 Silent p.I475I 0.36 TCGA-EE-A29E-06 12 121202836 121202836 G A SPPL3 Missense_Mutation p.S374F 0.44 deleterious(0.05) benign(0.051) TCGA-EE-A29E-06 12 121206784 121206784 G A SPPL3 Missense_Mutation p.S194L 0.57 tolerated(0.09) benign(0.102) TCGA-EE-A29E-06 12 121431496 121431496 G A HNF1A Missense_Mutation p.E234K 0.40 deleterious(0.02) benign(0.064) TCGA-EE-A29E-06 12 121454294 121454294 G A C12orf43 5'UTR 0.38 TCGA-EE-A29E-06 12 121654979 121654979 C A P2RX4 Silent p.S75S 0.43 TCGA-EE-A29E-06 12 121660778 121660778 C T P2RX4 Silent p.F168F 0.43 TCGA-EE-A29E-06 12 121784743 121784743 G A ANAPC5 Missense_Mutation p.S118F 0.35 tolerated(0.05) possibly_damaging(0.646) TCGA-EE-A29E-06 12 12232669 12232669 G A BCL2L14 Missense_Mutation p.E144K 0.36 tolerated(0.07) benign(0.221) TCGA-EE-A29E-06 12 122618397 122618397 C T MLXIP Missense_Mutation p.P532L 0.36 tolerated(0.12) benign(0.005) TCGA-EE-A29E-06 12 122674686 122674686 C T LRRC43 Silent p.L224L 0.39 TCGA-EE-A29E-06 12 124270403 124270403 G A DNAH10 Silent p.R386R 0.45 TCGA-EE-A29E-06 12 124272467 124272467 G A DNAH10 Missense_Mutation p.R452Q 0.62 probably_damaging(0.951) TCGA-EE-A29E-06 12 124298163 124298163 C T DNAH10 Silent p.L1081L 0.40 TCGA-EE-A29E-06 12 124311243 124311243 G A DNAH10 Missense_Mutation p.E1279K 0.39 benign(0.014) TCGA-EE-A29E-06 12 124415044 124415044 C T DNAH10 Silent p.F4118F 0.35 TCGA-EE-A29E-06 12 124831142 124831142 G A NCOR2 Missense_Mutation p.P1443S 0.43 possibly_damaging(0.661) TCGA-EE-A29E-06 12 12483157 12483157 G A MANSC1 Missense_Mutation p.S367F 0.36 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A29E-06 12 12814241 12814241 G A GPR19 Missense_Mutation p.A381V 0.48 tolerated(0.08) benign(0.075) TCGA-EE-A29E-06 12 129558775 129558775 G A TMEM132D Missense_Mutation p.S982F 0.48 tolerated(0.28) possibly_damaging(0.465) TCGA-EE-A29E-06 12 129559022 129559022 C T TMEM132D Missense_Mutation p.E900K 0.33 tolerated(0.74) benign(0.032) TCGA-EE-A29E-06 12 129569274 129569274 G T TMEM132D Intron 0.44 TCGA-EE-A29E-06 12 129694141 129694141 G A TMEM132D Missense_Mutation p.S456F 0.29 deleterious(0) probably_damaging(0.921) TCGA-EE-A29E-06 12 129822208 129822208 C T TMEM132D Missense_Mutation p.D424N 0.39 deleterious(0.01) possibly_damaging(0.72) TCGA-EE-A29E-06 12 130897266 130897266 G A RIMBP2 Missense_Mutation p.P907S 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 131620581 131620581 G A GPR133 Splice_Site p.X756_splice 0.33 TCGA-EE-A29E-06 12 132405930 132405930 C T ULK1 3'UTR 0.36 TCGA-EE-A29E-06 12 132510207 132510207 C T EP400 Silent p.I1624I 0.39 TCGA-EE-A29E-06 12 132551442 132551442 C T EP400 Missense_Mutation p.P2893S 0.36 possibly_damaging(0.646) TCGA-EE-A29E-06 12 133196666 133196666 G A P2RX2 Missense_Mutation p.D180N 0.64 tolerated(0.23) possibly_damaging(0.828) TCGA-EE-A29E-06 12 13366658 13366658 C T EMP1 Silent p.I73I 0.39 TCGA-EE-A29E-06 12 13715711 13715711 C T GRIN2B 3'UTR 0.39 TCGA-EE-A29E-06 12 13716769 13716769 C T GRIN2B Missense_Mutation p.D1135N 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29E-06 12 14659889 14659889 C T PLBD1 Missense_Mutation p.M450I 0.34 tolerated(0.05) probably_damaging(0.991) TCGA-EE-A29E-06 12 15734657 15734657 C T PTPRO Silent p.A1059A 0.45 TCGA-EE-A29E-06 12 16704197 16704197 C T LMO3 Missense_Mutation p.E155K 0.28 tolerated(0.14) benign(0.259) TCGA-EE-A29E-06 12 18644459 18644459 C T PIK3C2G Silent p.N879N 0.37 TCGA-EE-A29E-06 12 18849175 18849175 C T PLCZ1 Silent p.R400R 0.45 TCGA-EE-A29E-06 12 18891226 18891226 G A CAPZA3 Silent p.R8R 0.30 TCGA-EE-A29E-06 12 1943471 1943471 G A LRTM2 Missense_Mutation p.E233K 0.30 tolerated(0.06) benign(0.445) TCGA-EE-A29E-06 12 1995404 1995404 G A CACNA2D4 Silent p.F326F 0.29 TCGA-EE-A29E-06 12 21028176 21028176 C T SLCO1B3 Silent p.I245I 0.35 TCGA-EE-A29E-06 12 21294504 21294504 C T SLCO1B1 5'UTR 0.29 TCGA-EE-A29E-06 12 21375290 21375290 G A SLCO1B1 Missense_Mutation p.R580Q 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 21428330 21428330 C T SLCO1A2 Missense_Mutation p.G547S 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29E-06 12 21457497 21457497 C T SLCO1A2 Silent p.K151K 0.26 TCGA-EE-A29E-06 12 21712032 21712032 G A GYS2 Missense_Mutation p.S434L 0.34 deleterious(0) possibly_damaging(0.527) TCGA-EE-A29E-06 12 21965021 21965021 G A ABCC9 Silent p.I1391I 0.36 TCGA-EE-A29E-06 12 21998657 21998657 G A ABCC9 Silent p.F992F 0.39 TCGA-EE-A29E-06 12 21998764 21998764 C T ABCC9 Missense_Mutation p.E957K 0.28 tolerated(0.2) possibly_damaging(0.549) TCGA-EE-A29E-06 12 22005388 22005388 C T ABCC9 Missense_Mutation p.E853K 0.46 tolerated(0.16) benign(0.079) TCGA-EE-A29E-06 12 24985736 24985736 C T BCAT1 Missense_Mutation p.G334E 0.65 tolerated(1) benign(0.001) TCGA-EE-A29E-06 12 2705123 2705123 C T CACNA1C Missense_Mutation p.S916F 0.23 deleterious(0.03) possibly_damaging(0.704) TCGA-EE-A29E-06 12 278180 278180 G A IQSEC3 Nonsense_Mutation p.W991* 0.48 TCGA-EE-A29E-06 12 2786382 2786382 C T CACNA1C Silent p.L1699L 0.44 TCGA-EE-A29E-06 12 28116412 28116412 C T PTHLH Silent p.G131G 0.36 TCGA-EE-A29E-06 12 28116681 28116681 G A PTHLH Nonsense_Mutation p.Q42* 0.41 TCGA-EE-A29E-06 12 29725121 29725121 G A TMTC1 Silent p.A483A 0.42 TCGA-EE-A29E-06 12 31451024 31451024 G A FAM60A Nonsense_Mutation p.Q39* 0.44 TCGA-EE-A29E-06 12 32136638 32136638 C T KIAA1551 Missense_Mutation p.P917S 0.42 tolerated(0.23) benign(0.038) TCGA-EE-A29E-06 12 32949219 32949219 G A PKP2 Silent p.L771L 0.33 TCGA-EE-A29E-06 12 32955374 32955374 C T PKP2 Silent p.R754R 0.36 TCGA-EE-A29E-06 12 344366 344366 G A SLC6A13 Missense_Mutation p.P241S 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 39980074 39980074 G A ABCD2 Missense_Mutation p.R558W 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 40714883 40714883 C T LRRK2 Missense_Mutation p.S1688F 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 12 41316077 41316077 G A CNTN1 Missense_Mutation p.D83N 0.52 deleterious(0.04) possibly_damaging(0.816) TCGA-EE-A29E-06 12 41333159 41333159 G A CNTN1 Missense_Mutation p.M417I 0.33 tolerated(0.32) benign(0.102) TCGA-EE-A29E-06 12 41410657 41410657 C T CNTN1 Silent p.A786A 0.33 TCGA-EE-A29E-06 12 41957445 41957445 G A PDZRN4 Silent p.E487E 0.49 TCGA-EE-A29E-06 12 43858522 43858522 C T ADAMTS20 Missense_Mutation p.E461K 0.34 deleterious(0) probably_damaging(0.967) TCGA-EE-A29E-06 12 4409166 4409166 C T CCND2 Silent p.I287I 0.30 TCGA-EE-A29E-06 12 44176107 44176107 C T IRAK4 Intron 0.40 TCGA-EE-A29E-06 12 45410113 45410113 C T DBX2 Missense_Mutation p.E326K 0.34 deleterious_low_confidence(0.02) benign(0.26) TCGA-EE-A29E-06 12 46321886 46321886 G A SCAF11 Missense_Mutation p.S533L 0.40 tolerated(0.22) benign(0.006) TCGA-EE-A29E-06 12 46601385 46601385 C T SLC38A1 Silent p.K136K 0.32 TCGA-EE-A29E-06 12 47629002 47629002 G A PCED1B Silent p.G52G 0.41 TCGA-EE-A29E-06 12 48135321 48135321 G C RAPGEF3 Silent p.L630L 0.27 TCGA-EE-A29E-06 12 48377917 48377917 G A COL2A1 Missense_Mutation p.P632S 0.37 benign(0.285) TCGA-EE-A29E-06 12 48920047 48920047 C T OR8S1 Silent p.F211F 0.41 TCGA-EE-A29E-06 12 48963728 48963728 C T LALBA Missense_Mutation p.E26K 0.38 deleterious(0.05) benign(0.1) TCGA-EE-A29E-06 12 4919844 4919844 C T KCNA6 Nonsense_Mutation p.R213* 0.44 TCGA-EE-A29E-06 12 49426047 49426047 G A KMT2D Silent p.S4147S 0.38 TCGA-EE-A29E-06 12 49444331 49444331 G A KMT2D Missense_Mutation p.P1014S 0.65 probably_damaging(0.986) TCGA-EE-A29E-06 12 49938131 49938131 G A KCNH3 Silent p.E385E 0.32 TCGA-EE-A29E-06 12 49958316 49958316 G A MCRS1 Missense_Mutation p.R182W 0.36 deleterious(0) possibly_damaging(0.764) TCGA-EE-A29E-06 12 51442931 51442931 C T LETMD1 Silent p.F79F 0.45 TCGA-EE-A29E-06 12 51457690 51457690 G A CSRNP2 Missense_Mutation p.P491S 0.30 deleterious_low_confidence(0.01) benign(0.008) TCGA-EE-A29E-06 12 51457691 51457691 G A CSRNP2 Silent p.N490N 0.30 TCGA-EE-A29E-06 12 51685803 51685803 G A BIN2 Missense_Mutation p.P363S 0.49 tolerated_low_confidence(0.38) benign(0.014) TCGA-EE-A29E-06 12 51773391 51773391 C T GALNT6 Missense_Mutation p.E59K 0.32 deleterious_low_confidence(0.03) benign(0.07) TCGA-EE-A29E-06 12 52096571 52096571 G A SCN8A Missense_Mutation p.G336E 0.47 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 12 52156407 52156407 G A SCN8A Missense_Mutation p.E831K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 12 52284412 52284412 C T ANKRD33 Silent p.L228L 0.44 TCGA-EE-A29E-06 12 52285033 52285033 G A ANKRD33 Missense_Mutation p.E435K 0.46 deleterious(0.05) benign(0.007) TCGA-EE-A29E-06 12 52650015 52650015 C T KRT121P RNA 0.41 TCGA-EE-A29E-06 12 52825840 52825840 C T KRT75 Missense_Mutation p.E242K 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 52865510 52865510 C T KRT6C Silent p.E254E 0.34 TCGA-EE-A29E-06 12 52881613 52881613 G A KRT6A Missense_Mutation p.S529F 0.39 tolerated(0.18) unknown(0) TCGA-EE-A29E-06 12 52940176 52940176 C T KRT71 Missense_Mutation p.E407K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 12 52965768 52965768 C T KRT74 Missense_Mutation p.R236Q 0.31 tolerated(0.08) benign(0.014) TCGA-EE-A29E-06 12 53071153 53071153 C T KRT1 Missense_Mutation p.E359K 0.22 deleterious(0) probably_damaging(0.953) TCGA-EE-A29E-06 12 53073659 53073659 G A KRT1 Silent p.N158N 0.31 TCGA-EE-A29E-06 12 53169341 53169341 C T KRT76 Missense_Mutation p.E216K 0.35 tolerated(0.54) possibly_damaging(0.474) TCGA-EE-A29E-06 12 53207852 53207852 G A KRT4 5'UTR 0.41 TCGA-EE-A29E-06 12 53495889 53495889 T A IGFBP6 Missense_Mutation p.S221T 0.61 deleterious(0) benign(0.005) TCGA-EE-A29E-06 12 53722505 53722505 C G SP7 Missense_Mutation p.E241Q 0.40 tolerated(0.56) benign(0.046) TCGA-EE-A29E-06 12 53825060 53825060 G A AMHR2 Missense_Mutation p.A509T 0.51 tolerated(0.23) benign(0.092) TCGA-EE-A29E-06 12 54379160 54379160 C T HOXC10 Silent p.F39F 0.60 TCGA-EE-A29E-06 12 54423580 54423580 C T HOXC6 Missense_Mutation p.T181I 0.38 deleterious(0) possibly_damaging(0.867) TCGA-EE-A29E-06 12 54911346 54911346 C T NCKAP1L Silent p.F375F 0.36 TCGA-EE-A29E-06 12 54968957 54968957 C T PDE1B Silent p.V380V 0.37 TCGA-EE-A29E-06 12 55420266 55420266 G C NEUROD4 Missense_Mutation p.V15L 0.41 deleterious(0.04) benign(0.077) TCGA-EE-A29E-06 12 55524229 55524229 C T OR9K2 Missense_Mutation p.S226F 0.53 tolerated(0.46) benign(0.005) TCGA-EE-A29E-06 12 55615096 55615096 C T OR10A7 Silent p.G96G 0.37 TCGA-EE-A29E-06 12 55726216 55726216 C T OR6C3 Silent p.V244V 0.38 TCGA-EE-A29E-06 12 55820949 55820949 G A OR6C76 Silent p.K304K 0.52 TCGA-EE-A29E-06 12 55846192 55846192 C T OR6C2 Silent p.S65S 0.41 TCGA-EE-A29E-06 12 55846641 55846641 C T OR6C2 Missense_Mutation p.S215F 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 12 55945717 55945717 T A OR6C4 Missense_Mutation p.F236Y 0.53 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A29E-06 12 55945720 55945720 C T OR6C4 Missense_Mutation p.S237F 0.29 deleterious_low_confidence(0) benign(0.007) TCGA-EE-A29E-06 12 55945721 55945721 C T OR6C4 Silent p.S237S 0.29 TCGA-EE-A29E-06 12 56031264 56031264 G A OR10P1 Missense_Mutation p.E197K 0.43 deleterious(0.03) possibly_damaging(0.899) TCGA-EE-A29E-06 12 56527378 56527378 C T ESYT1 Missense_Mutation p.P434S 0.43 tolerated(0.68) benign(0.025) TCGA-EE-A29E-06 12 56626551 56626551 G A SLC39A5 Silent p.E122E 0.26 TCGA-EE-A29E-06 12 56755841 56755841 G A APOF Missense_Mutation p.P50L 0.28 tolerated(0.05) benign(0.086) TCGA-EE-A29E-06 12 5744481 5744481 C T ANO2 Silent p.V551V 0.45 TCGA-EE-A29E-06 12 57660589 57660589 G A R3HDM2 Missense_Mutation p.P672S 0.32 deleterious(0.05) benign(0.217) TCGA-EE-A29E-06 12 57828709 57828709 C T INHBC Missense_Mutation p.P14S 0.39 tolerated(0.13) unknown(0) TCGA-EE-A29E-06 12 57843565 57843565 G A INHBC Missense_Mutation p.M273I 0.50 tolerated(0.16) possibly_damaging(0.585) TCGA-EE-A29E-06 12 57843869 57843869 C T INHBC 3'UTR 0.46 TCGA-EE-A29E-06 12 57859013 57859013 C T GLI1 Missense_Mutation p.S170F 0.42 tolerated(0.05) benign(0.323) TCGA-EE-A29E-06 12 57867829 57867829 G A ARHGAP9 Silent p.A638A 0.37 TCGA-EE-A29E-06 12 57919882 57919882 A G MBD6 Silent p.E377E 0.32 TCGA-EE-A29E-06 12 57919883 57919883 G A MBD6 Missense_Mutation p.G378R 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29E-06 12 57985150 57985150 C T PIP4K2C Silent p.S26S 0.45 TCGA-EE-A29E-06 12 6125315 6125315 G A VWF Silent p.L1799L 0.47 TCGA-EE-A29E-06 12 62104120 62104120 G A FAM19A2 3'UTR 0.46 TCGA-EE-A29E-06 12 62104128 62104128 A C FAM19A2 3'UTR 0.45 TCGA-EE-A29E-06 12 6232351 6232351 G A VWF Silent p.A4A 0.42 TCGA-EE-A29E-06 12 6579722 6579722 C G VAMP1 5'UTR 0.33 TCGA-EE-A29E-06 12 68647154 68647154 G A IL22 Silent p.A25A 0.45 TCGA-EE-A29E-06 12 6946927 6946927 C T LEPREL2 Silent p.H580H 0.40 TCGA-EE-A29E-06 12 69980054 69980054 C T CCT2 Missense_Mutation p.S3F 0.28 deleterious_low_confidence(0.03) benign(0.08) TCGA-EE-A29E-06 12 7047681 7047681 C T ATN1 Missense_Mutation p.P852L 0.52 benign(0.002) TCGA-EE-A29E-06 12 70938397 70938397 C T PTPRB Missense_Mutation p.E1812K 0.40 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A29E-06 12 70953393 70953393 G A PTPRB Missense_Mutation p.P1482S 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 12 70960270 70960270 G A PTPRB Silent p.I1283I 0.32 TCGA-EE-A29E-06 12 70964929 70964929 G A PTPRB Missense_Mutation p.H1083Y 0.39 tolerated(1) benign(0.005) TCGA-EE-A29E-06 12 70988418 70988418 G A PTPRB Nonsense_Mutation p.R449* 0.33 TCGA-EE-A29E-06 12 71155373 71155373 G A PTPRR Missense_Mutation p.P169S 0.34 tolerated_low_confidence(0.26) benign(0.139) TCGA-EE-A29E-06 12 71551554 71551554 T A TSPAN8 5'UTR 0.39 TCGA-EE-A29E-06 12 72680599 72680599 G A TRHDE Silent p.V306V 0.38 TCGA-EE-A29E-06 12 72955960 72955960 C T TRHDE Missense_Mutation p.H557Y 0.35 tolerated(0.17) possibly_damaging(0.468) TCGA-EE-A29E-06 12 7463328 7463328 C T ACSM4 Silent p.F202F 0.42 TCGA-EE-A29E-06 12 7473360 7473360 C T ACSM4 Missense_Mutation p.P321S 0.26 deleterious(0.03) probably_damaging(0.925) TCGA-EE-A29E-06 12 7531710 7531710 G A CD163L1 Silent p.F745F 0.39 TCGA-EE-A29E-06 12 7531772 7531772 C T CD163L1 Missense_Mutation p.E725K 0.41 tolerated(0.64) benign(0.193) TCGA-EE-A29E-06 12 75441937 75441937 C T KCNC2 Silent p.R592R 0.37 TCGA-EE-A29E-06 12 7550916 7550916 C T CD163L1 Missense_Mutation p.S558N 0.35 tolerated(0.47) benign(0.001) TCGA-EE-A29E-06 12 7556422 7556422 C T CD163L1 Missense_Mutation p.D373N 0.30 tolerated(0.72) benign(0.223) TCGA-EE-A29E-06 12 75672823 75672823 G A CAPS2 Intron 0.39 TCGA-EE-A29E-06 12 7586211 7586211 C T CD163L1 Silent p.Q68Q 0.49 TCGA-EE-A29E-06 12 7640126 7640126 C T CD163 Missense_Mutation p.G627R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 7651761 7651761 G A CD163 Silent p.L161L 0.40 TCGA-EE-A29E-06 12 76791507 76791507 G A OSBPL8 Silent p.F213F 0.32 TCGA-EE-A29E-06 12 78582525 78582525 G A NAV3 Missense_Mutation p.G1986E 0.44 deleterious(0) probably_damaging(0.954) TCGA-EE-A29E-06 12 7867799 7867799 G A DPPA3 Missense_Mutation p.E35K 0.44 tolerated(0.16) benign(0.008) TCGA-EE-A29E-06 12 7882210 7882210 C T CLEC4C Missense_Mutation p.M208I 0.43 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A29E-06 12 7942271 7942271 G A NANOG Missense_Mutation p.E21K 0.28 tolerated(0.07) benign(0.01) TCGA-EE-A29E-06 12 79693260 79693260 C T SYT1 Missense_Mutation p.P247S 0.44 deleterious(0.02) benign(0.123) TCGA-EE-A29E-06 12 79693272 79693272 G A SYT1 Missense_Mutation p.V251M 0.44 deleterious(0) possibly_damaging(0.887) TCGA-EE-A29E-06 12 79693274 79693274 G A SYT1 Silent p.V251V 0.41 TCGA-EE-A29E-06 12 7982503 7982503 G A SLC2A14 Silent p.G147G 0.36 TCGA-EE-A29E-06 12 7985410 7985410 C A SLC2A14 Missense_Mutation p.V30F 0.37 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29E-06 12 80707383 80707383 C T OTOGL Missense_Mutation p.S1184L 0.35 tolerated(0.06) benign(0.078) TCGA-EE-A29E-06 12 81112819 81112819 C T MYF5 Missense_Mutation p.H253Y 0.35 deleterious(0) possibly_damaging(0.65) TCGA-EE-A29E-06 12 81532947 81532947 C T ACSS3 Missense_Mutation p.P228L 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 12 81568669 81568669 C T ACSS3 Missense_Mutation p.R401C 0.33 deleterious(0) possibly_damaging(0.9) TCGA-EE-A29E-06 12 81647092 81647092 C T ACSS3 Missense_Mutation p.L576F 0.41 deleterious(0.01) possibly_damaging(0.724) TCGA-EE-A29E-06 12 81647355 81647355 G A ACSS3 Missense_Mutation p.R634Q 0.35 tolerated(0.09) benign(0.01) TCGA-EE-A29E-06 12 81676811 81676811 G A PPFIA2 Missense_Mutation p.S999F 0.39 deleterious(0.01) benign(0.322) TCGA-EE-A29E-06 12 81762949 81762949 C T PPFIA2 Missense_Mutation p.E431K 0.49 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 12 8203144 8203144 C T FOXJ2 Missense_Mutation p.P522S 0.49 tolerated(0.3) benign(0.004) TCGA-EE-A29E-06 12 85264263 85264263 G A SLC6A15 Missense_Mutation p.L497F 0.51 tolerated(0.42) benign(0.02) TCGA-EE-A29E-06 12 85449912 85449912 G A LRRIQ1 Missense_Mutation p.M447I 0.37 tolerated(0.05) benign(0.021) TCGA-EE-A29E-06 12 85450708 85450708 G A LRRIQ1 Missense_Mutation p.E713K 0.41 tolerated(0.1) possibly_damaging(0.507) TCGA-EE-A29E-06 12 85554394 85554394 C T LRRIQ1 Missense_Mutation p.S1575F 0.42 deleterious(0) benign(0.423) TCGA-EE-A29E-06 12 86199212 86199212 G A RASSF9 Silent p.S192S 0.42 TCGA-EE-A29E-06 12 88379643 88379643 T C C12orf50 Silent p.K370K 0.34 TCGA-EE-A29E-06 12 90018044 90018044 G A ATP2B1 Silent p.F420F 0.36 TCGA-EE-A29E-06 12 9004564 9004564 C T A2ML1 Missense_Mutation p.R807C 0.35 tolerated(0.18) possibly_damaging(0.849) TCGA-EE-A29E-06 12 91546958 91546958 G A DCN Missense_Mutation p.P221S 0.37 tolerated(1) benign(0.001) TCGA-EE-A29E-06 12 91552088 91552088 G A DCN Nonsense_Mutation p.Q175* 0.35 TCGA-EE-A29E-06 12 91558384 91558384 G A DCN Missense_Mutation p.H108Y 0.33 tolerated(1) benign(0.066) TCGA-EE-A29E-06 12 91572327 91572327 C T DCN Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 12 91572359 91572359 G A DCN 5'UTR 0.34 TCGA-EE-A29E-06 12 93100769 93100769 C T C12orf74 Missense_Mutation p.S121L 0.30 deleterious(0.02) benign(0.159) TCGA-EE-A29E-06 12 9316298 9316298 C T PZP Missense_Mutation p.R901K 0.36 tolerated(0.6) possibly_damaging(0.878) TCGA-EE-A29E-06 12 9322163 9322163 C T PZP Missense_Mutation p.D622N 0.33 tolerated(0.06) probably_damaging(0.984) TCGA-EE-A29E-06 12 93793086 93793086 C T NUDT4 Silent p.S159S 0.06 TCGA-EE-A29E-06 12 93793087 93793087 C T NUDT4 Missense_Mutation p.L160F 0.06 tolerated(0.63) benign(0.004) TCGA-EE-A29E-06 12 95681522 95681522 C T VEZT Silent p.L471L 0.40 TCGA-EE-A29E-06 12 95879672 95879672 C T METAP2 Missense_Mutation p.P115S 0.35 deleterious(0) benign(0.048) TCGA-EE-A29E-06 12 96063853 96063853 C T NTN4 Splice_Site p.X527_splice 0.24 TCGA-EE-A29E-06 12 96063854 96063854 C T NTN4 Missense_Mutation p.V527M 0.24 deleterious(0) probably_damaging(0.979) TCGA-EE-A29E-06 12 96371830 96371830 G A HAL Missense_Mutation p.P516S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 12 97073425 97073425 G A C12orf55 Missense_Mutation p.D1871N 0.39 deleterious(0.03) benign(0.006) TCGA-EE-A29E-06 12 97078477 97078477 C T C12orf55 Missense_Mutation p.S1923L 0.38 deleterious(0.01) benign(0) TCGA-EE-A29E-06 12 97084957 97084957 C T C12orf55 Nonsense_Mutation p.Q2045* 0.40 TCGA-EE-A29E-06 12 98849719 98849726 TGAGCTTG - SLC9A7P1 RNA 0.18 TCGA-EE-A29E-06 12 98926672 98926672 C T TMPO Missense_Mutation p.P213S 0.40 deleterious_low_confidence(0) benign(0.007) TCGA-EE-A29E-06 13 103524668 103524668 C T BIVM-ERCC5 Silent p.A1359A 0.68 TCGA-EE-A29E-06 13 103718317 103718317 G A SLC10A2 Missense_Mutation p.L95F 0.75 tolerated(0.23) benign(0.005) TCGA-EE-A29E-06 13 107145751 107145751 G A EFNB2 Silent p.A213A 0.75 TCGA-EE-A29E-06 13 110817287 110817287 C T COL4A1 Missense_Mutation p.E1358K 0.75 possibly_damaging(0.709) TCGA-EE-A29E-06 13 113803279 113803279 G A F10 Silent p.V305V 0.65 TCGA-EE-A29E-06 13 113899313 113899313 C T CUL4A Missense_Mutation p.L462F 0.71 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 13 114287579 114287579 C T TFDP1 Silent p.N151N 0.88 TCGA-EE-A29E-06 13 114535377 114535377 G A GAS6 Silent p.I346I 0.68 TCGA-EE-A29E-06 13 24465622 24465622 C T C1QTNF9B Missense_Mutation p.G270R 0.59 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A29E-06 13 27259904 27259904 C T WASF3 Silent p.I477I 0.70 TCGA-EE-A29E-06 13 27259953 27259953 G A WASF3 Missense_Mutation p.E494K 0.84 deleterious(0) unknown(0) TCGA-EE-A29E-06 13 28578200 28578200 C T FLT3 Missense_Mutation p.E991K 0.42 tolerated_low_confidence(0.17) benign(0.003) TCGA-EE-A29E-06 13 28877378 28877378 C T FLT1 Missense_Mutation p.E1315K 0.41 tolerated(0.08) benign(0.285) TCGA-EE-A29E-06 13 29599079 29599079 C T MTUS2 Nonsense_Mutation p.Q92* 0.21 TCGA-EE-A29E-06 13 29599243 29599243 G A MTUS2 Silent p.R146R 0.59 TCGA-EE-A29E-06 13 30077312 30077312 C T MTUS2 Missense_Mutation p.S1370F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 13 32914045 32914045 C T BRCA2 Silent p.I1851I 0.63 TCGA-EE-A29E-06 13 33629411 33629411 C T KL Missense_Mutation p.P520S 0.61 tolerated(0.07) possibly_damaging(0.764) TCGA-EE-A29E-06 13 35716405 35716405 G A NBEA Splice_Site p.X779_splice 0.19 TCGA-EE-A29E-06 13 35733949 35733949 C T NBEA Missense_Mutation p.S1214L 0.37 tolerated_low_confidence(0.46) benign(0.001) TCGA-EE-A29E-06 13 36125135 36125135 G A NBEA Missense_Mutation p.G2258R 0.46 deleterious(0) probably_damaging(0.959) TCGA-EE-A29E-06 13 36158062 36158062 G A NBEA Missense_Mutation p.A2355T 0.57 tolerated(0.12) possibly_damaging(0.739) TCGA-EE-A29E-06 13 37011835 37011835 C T CCNA1 Missense_Mutation p.P123S 0.56 tolerated(1) benign(0.003) TCGA-EE-A29E-06 13 38211199 38211199 C T TRPC4 Silent p.K930K 0.31 TCGA-EE-A29E-06 13 38211237 38211237 C T TRPC4 Missense_Mutation p.E918K 0.30 tolerated_low_confidence(0.09) benign(0.009) TCGA-EE-A29E-06 13 38213191 38213191 C T TRPC4 Missense_Mutation p.E738K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 13 38357147 38357147 G A TRPC4 Silent p.V108V 0.66 TCGA-EE-A29E-06 13 38357417 38357417 G A TRPC4 Silent p.I18I 0.36 TCGA-EE-A29E-06 13 39544509 39544509 G A STOML3 Missense_Mutation p.S110F 0.62 deleterious(0) probably_damaging(0.966) TCGA-EE-A29E-06 13 41525489 41525489 G A ELF1 Missense_Mutation p.P113S 0.21 tolerated(0.4) benign(0.081) TCGA-EE-A29E-06 13 42460146 42460146 G A VWA8 Silent p.S295S 0.67 TCGA-EE-A29E-06 13 43537394 43537394 C T EPSTI1 Silent p.E162E 0.51 TCGA-EE-A29E-06 13 46287745 46287745 C T SPERT Silent p.I195I 0.37 TCGA-EE-A29E-06 13 46357420 46357420 G A SIAH3 3'UTR 0.58 TCGA-EE-A29E-06 13 46543265 46543265 G A ZC3H13 Silent p.S1138S 0.43 TCGA-EE-A29E-06 13 47409676 47409676 C T HTR2A Missense_Mutation p.G238S 0.51 deleterious(0) probably_damaging(0.95) TCGA-EE-A29E-06 13 49688850 49688850 C T FNDC3A Missense_Mutation p.P79S 0.54 deleterious(0) probably_damaging(0.979) TCGA-EE-A29E-06 13 49865983 49865983 T A CDADC1 3'UTR 0.40 TCGA-EE-A29E-06 13 50235092 50235092 G A EBPL 3'UTR 0.24 TCGA-EE-A29E-06 13 50235188 50235188 G A EBPL Silent p.I179I 0.33 TCGA-EE-A29E-06 13 51963578 51963578 G A INTS6 Missense_Mutation p.R206C 0.34 deleterious(0) possibly_damaging(0.787) TCGA-EE-A29E-06 13 52511477 52511477 C T ATP7B Missense_Mutation p.R1319Q 0.58 tolerated(0.09) benign(0.033) TCGA-EE-A29E-06 13 53419641 53419641 C T PCDH8 Missense_Mutation p.G920R 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 13 53624759 53624759 G A OLFM4 Silent p.G462G 0.55 TCGA-EE-A29E-06 13 58207617 58207617 G A PCDH17 Missense_Mutation p.E313K 0.37 tolerated(0.27) probably_damaging(0.93) TCGA-EE-A29E-06 13 58298822 58298822 C T PCDH17 Silent p.F958F 0.39 TCGA-EE-A29E-06 13 58299275 58299275 G A PCDH17 Silent p.R1109R 0.40 TCGA-EE-A29E-06 13 60548485 60548485 C T DIAPH3 Splice_Site p.X550_splice 0.32 TCGA-EE-A29E-06 13 70281891 70281891 G A KLHL1 Missense_Mutation p.P685S 0.45 tolerated(0.51) benign(0.402) TCGA-EE-A29E-06 13 70314627 70314627 C T KLHL1 Silent p.L567L 0.64 TCGA-EE-A29E-06 13 70514274 70514274 G A KLHL1 Silent p.F304F 0.64 TCGA-EE-A29E-06 13 76432095 76432095 G A LMO7 Silent p.T1368T 0.85 TCGA-EE-A29E-06 13 77656067 77656067 G A MYCBP2 Missense_Mutation p.H3662Y 0.79 probably_damaging(0.921) TCGA-EE-A29E-06 13 79189748 79189748 G A RNF219 Silent p.S716S 0.72 TCGA-EE-A29E-06 13 84453717 84453717 G A SLITRK1 Silent p.I642I 0.60 TCGA-EE-A29E-06 13 86369087 86369087 C T SLITRK6 Nonsense_Mutation p.W519* 0.77 TCGA-EE-A29E-06 13 98116774 98116774 C T RAP2A 3'UTR 0.83 TCGA-EE-A29E-06 13 99337053 99337053 C T SLC15A1 Silent p.E684E 0.87 TCGA-EE-A29E-06 14 100172986 100172986 C T CYP46A1 Missense_Mutation p.S149F 0.84 deleterious(0) benign(0.124) TCGA-EE-A29E-06 14 101318772 101318772 G A MIR770 RNA 0.80 TCGA-EE-A29E-06 14 102550183 102550183 C A HSP90AA1 Nonsense_Mutation p.E551* 0.77 TCGA-EE-A29E-06 14 102964022 102964022 G A TECPR2 Nonsense_Mutation p.W1349* 0.92 TCGA-EE-A29E-06 14 103400114 103400114 G A CDC42BPB Missense_Mutation p.P1691S 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 14 104028382 104028382 G A BAG5 5'UTR 0.87 TCGA-EE-A29E-06 14 104515982 104515982 C T TDRD9 Missense_Mutation p.P1338S 0.54 deleterious(0.04) possibly_damaging(0.607) TCGA-EE-A29E-06 14 105177966 105177966 G T INF2 Nonsense_Mutation p.E807* 0.71 TCGA-EE-A29E-06 14 105409854 105409854 G A AHNAK2 Silent p.F3978F 0.87 TCGA-EE-A29E-06 14 105414672 105414672 G A AHNAK2 Silent p.S2372S 0.83 TCGA-EE-A29E-06 14 105414677 105414677 G A AHNAK2 Missense_Mutation p.P2371S 0.82 benign(0.001) TCGA-EE-A29E-06 14 106173725 106173725 G A IGHA1 Missense_Mutation p.S281F 0.62 deleterious(0) probably_damaging(0.95) TCGA-EE-A29E-06 14 106209227 106209227 C T IGHG1 Missense_Mutation p.G61E 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 14 106235647 106235647 G A IGHG3 Missense_Mutation p.S354L 0.84 deleterious(0.01) benign(0.411) TCGA-EE-A29E-06 14 106235852 106235852 C T IGHG3 Missense_Mutation p.E286K 0.65 deleterious(0.01) benign(0.116) TCGA-EE-A29E-06 14 106237553 106237553 G T IGHG3 Missense_Mutation p.S64Y 0.80 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 14 106452697 106452697 C T IGHV1-2 Missense_Mutation p.D109N 0.79 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 14 106471664 106471664 C T IGHV1-3 Silent p.R6R 0.75 TCGA-EE-A29E-06 14 107048827 107048827 C T IGHV3-53 Missense_Mutation p.E65K 0.82 deleterious_low_confidence(0) benign(0.414) TCGA-EE-A29E-06 14 107131212 107131212 G A IGHV3-66 Missense_Mutation p.R57C 0.73 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-EE-A29E-06 14 19378106 19378106 C T OR11H12 Silent p.F171F 0.21 TCGA-EE-A29E-06 14 20002262 20002262 G A POTEM Missense_Mutation p.S387L 0.31 tolerated(0.13) probably_damaging(0.942) TCGA-EE-A29E-06 14 20010259 20010259 G A POTEM Intron 0.75 TCGA-EE-A29E-06 14 20249364 20249364 G A OR4M1 Missense_Mutation p.E295K 0.38 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A29E-06 14 20295610 20295610 G A OR4N2 Translation_Start_Site p.M1? 0.45 deleterious(0) benign(0.049) TCGA-EE-A29E-06 14 20403841 20403841 G A OR4K1 Missense_Mutation p.E6K 0.38 tolerated(0.62) benign(0.001) TCGA-EE-A29E-06 14 20404664 20404664 C T OR4K1 Missense_Mutation p.P280L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 14 20502373 20502373 G A OR4K13 Missense_Mutation p.P182L 0.31 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 14 20502407 20502407 G A OR4K13 Missense_Mutation p.P171S 0.34 deleterious(0.03) benign(0.392) TCGA-EE-A29E-06 14 20502633 20502633 C T OR4K13 Nonsense_Mutation p.W95* 0.45 TCGA-EE-A29E-06 14 20502725 20502725 T C OR4K13 Missense_Mutation p.N65D 0.48 deleterious(0.01) possibly_damaging(0.611) TCGA-EE-A29E-06 14 21109286 21109286 G A OR6S1 Missense_Mutation p.R189C 0.29 deleterious(0) possibly_damaging(0.904) TCGA-EE-A29E-06 14 21109685 21109685 G A OR6S1 Nonsense_Mutation p.R56* 0.41 TCGA-EE-A29E-06 14 21162218 21162218 C T ANG 3'UTR 0.31 TCGA-EE-A29E-06 14 21486622 21486622 G A NDRG2 Silent p.F285F 0.36 TCGA-EE-A29E-06 14 21500237 21500237 A T TPPP2 3'UTR 0.30 TCGA-EE-A29E-06 14 21623811 21623811 G A OR5AU1 Missense_Mutation p.S125F 0.37 deleterious(0) probably_damaging(0.956) TCGA-EE-A29E-06 14 21795943 21795943 G A RPGRIP1 Missense_Mutation p.E958K 0.22 tolerated(0.07) benign(0.063) TCGA-EE-A29E-06 14 21991618 21991618 G A SALL2 Silent p.F748F 0.31 TCGA-EE-A29E-06 14 21992346 21992346 G A SALL2 Missense_Mutation p.P506S 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A29E-06 14 22090560 22090560 G A TRAV1-1 Missense_Mutation p.D56N 0.36 tolerated(0.3) benign(0.005) TCGA-EE-A29E-06 14 22236734 22236734 G A TRAV6 5'UTR 0.37 TCGA-EE-A29E-06 14 22236785 22236785 G A TRAV6 Missense_Mutation p.G17E 0.35 deleterious_low_confidence(0) possibly_damaging(0.537) TCGA-EE-A29E-06 14 22309432 22309432 C T TRAV12-1 Missense_Mutation p.S3F 0.28 deleterious(0) unknown(0) TCGA-EE-A29E-06 14 22337365 22337365 C T TRAV13-1 Silent p.F52F 0.44 TCGA-EE-A29E-06 14 22362746 22362746 C T TRAV8-4 Silent p.L2L 0.29 TCGA-EE-A29E-06 14 22386676 22386676 C T TRAV13-2 Missense_Mutation p.P29S 0.32 tolerated(1) benign(0.001) TCGA-EE-A29E-06 14 22409688 22409688 G A TRAV9-2 Missense_Mutation p.G60R 0.42 tolerated(0.1) benign(0.315) TCGA-EE-A29E-06 14 22434112 22434112 C T TRAV12-3 Silent p.F55F 0.43 TCGA-EE-A29E-06 14 22466149 22466149 G A TRAV17 Missense_Mutation p.D27N 0.58 tolerated(1) benign(0) TCGA-EE-A29E-06 14 22539242 22539242 G A TRAV22 Silent p.Q34Q 0.41 TCGA-EE-A29E-06 14 22564757 22564757 C T TRDV1 Missense_Mutation p.R70C 0.42 deleterious(0.04) benign(0.286) TCGA-EE-A29E-06 14 22580838 22580838 C T TRAV25 Missense_Mutation p.P61S 0.44 deleterious(0.02) probably_damaging(0.957) TCGA-EE-A29E-06 14 22636806 22636806 G A TRAV30 Missense_Mutation p.E87K 0.50 benign(0.155) TCGA-EE-A29E-06 14 22671067 22671067 C T TRAV26-2 Silent p.I44I 0.30 TCGA-EE-A29E-06 14 22694915 22694915 G A TRAV36DV7 Missense_Mutation p.E36K 0.43 tolerated(0.09) probably_damaging(0.931) TCGA-EE-A29E-06 14 22739876 22739876 G A TRAV38-1 Nonsense_Mutation p.W8* 0.44 TCGA-EE-A29E-06 14 22783131 22783131 G A TRAV40 Missense_Mutation p.G33R 0.35 tolerated(0.12) possibly_damaging(0.618) TCGA-EE-A29E-06 14 23346335 23346335 C T LRP10 Nonsense_Mutation p.Q581* 0.45 TCGA-EE-A29E-06 14 23354069 23354069 C T REM2 Missense_Mutation p.S97L 0.33 tolerated(0.28) probably_damaging(0.996) TCGA-EE-A29E-06 14 23530347 23530347 G A ACIN1 Silent p.F1215F 0.84 TCGA-EE-A29E-06 14 23600757 23600757 G A SLC7A8 Silent p.F342F 0.95 TCGA-EE-A29E-06 14 23884284 23884284 C T MYH7 Missense_Mutation p.E1827K 0.88 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A29E-06 14 23886092 23886092 G A MYH7 Silent p.A1543A 0.76 TCGA-EE-A29E-06 14 23938918 23938918 T A NGDN 5'UTR 0.92 TCGA-EE-A29E-06 14 24800553 24800553 G A ADCY4 Missense_Mutation p.L227F 0.78 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 14 24845739 24845739 C T NFATC4 Missense_Mutation p.P829S 0.67 deleterious_low_confidence(0.04) possibly_damaging(0.878) TCGA-EE-A29E-06 14 24845740 24845740 C T NFATC4 Missense_Mutation p.P829L 0.69 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EE-A29E-06 14 25077614 25077614 C G GZMH Missense_Mutation p.E20D 0.83 tolerated(0.05) benign(0.32) TCGA-EE-A29E-06 14 28733799 28733799 C T BNIP3P1 RNA 0.79 TCGA-EE-A29E-06 14 33291898 33291898 G A AKAP6 Missense_Mutation p.E1627K 0.82 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 14 35264087 35264087 G A BAZ1A Missense_Mutation p.P411S 0.89 deleterious(0) probably_damaging(0.968) TCGA-EE-A29E-06 14 36103909 36103909 G A RALGAPA1 Missense_Mutation p.P1450S 0.72 tolerated(0.76) probably_damaging(0.999) TCGA-EE-A29E-06 14 36840634 36840634 T C DPPA3P2 RNA 0.93 TCGA-EE-A29E-06 14 39716574 39716574 G A MIA2 Missense_Mutation p.E266K 0.73 tolerated(0.2) benign(0.078) TCGA-EE-A29E-06 14 47351311 47351311 G A MDGA2 Silent p.V784V 0.90 TCGA-EE-A29E-06 14 50576425 50576425 G A VCPKMT Missense_Mutation p.P228S 0.79 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-EE-A29E-06 14 51095121 51095121 G A ATL1 Missense_Mutation p.G498R 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 14 56134036 56134036 C T KTN1 Silent p.V1085V 0.79 TCGA-EE-A29E-06 14 58063609 58063609 C T SLC35F4 Missense_Mutation p.E3K 0.94 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A29E-06 14 59014655 59014655 G T KIAA0586 Silent p.G1632G 0.86 TCGA-EE-A29E-06 14 60903606 60903606 A T C14orf39 Missense_Mutation p.F574Y 0.78 deleterious(0.02) unknown(0) TCGA-EE-A29E-06 14 60928118 60928118 T G C14orf39 Silent p.P357P 0.76 TCGA-EE-A29E-06 14 62536444 62536444 G A SYT16 Missense_Mutation p.G216E 0.84 tolerated(0.12) benign(0.097) TCGA-EE-A29E-06 14 63174765 63174765 C T KCNH5 Missense_Mutation p.G810R 0.74 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29E-06 14 63174776 63174776 C T KCNH5 Missense_Mutation p.G806E 0.77 tolerated_low_confidence(0.2) benign(0.001) TCGA-EE-A29E-06 14 63447650 63447650 C T KCNH5 Silent p.V294V 0.93 TCGA-EE-A29E-06 14 69521726 69521726 G A DCAF5 Silent p.S559S 0.83 TCGA-EE-A29E-06 14 69707717 69707717 C T EXD2 Missense_Mutation p.S589F 0.83 deleterious(0.01) possibly_damaging(0.715) TCGA-EE-A29E-06 14 70461138 70461138 G A SMOC1 Nonsense_Mutation p.W202* 0.83 TCGA-EE-A29E-06 14 70713473 70713473 G A ADAM21P1 RNA 0.84 TCGA-EE-A29E-06 14 70924745 70924745 G A ADAM21 Missense_Mutation p.E177K 0.68 tolerated(0.13) benign(0.02) TCGA-EE-A29E-06 14 71137855 71137855 G A TTC9 Missense_Mutation p.E218K 0.69 deleterious(0) benign(0.097) TCGA-EE-A29E-06 14 72055770 72055770 C T SIPA1L1 Missense_Mutation p.S394F 0.90 tolerated(0.26) possibly_damaging(0.726) TCGA-EE-A29E-06 14 74665739 74665739 C T LIN52 3'UTR 0.85 TCGA-EE-A29E-06 14 75323699 75323699 C T PROX2 Splice_Site p.X245_splice 0.82 TCGA-EE-A29E-06 14 75369091 75369091 C T DLST 3'UTR 0.80 TCGA-EE-A29E-06 14 75928189 75928189 C T JDP2 Nonsense_Mutation p.R99* 0.74 TCGA-EE-A29E-06 14 77229155 77229155 A C VASH1 5'UTR 0.78 TCGA-EE-A29E-06 14 77705054 77705054 G A TMEM63C Missense_Mutation p.M223I 0.75 tolerated(0.06) benign(0.313) TCGA-EE-A29E-06 14 77710775 77710775 C T TMEM63C Silent p.A475A 0.75 TCGA-EE-A29E-06 14 77908908 77908908 G A VIPAS39 Silent p.L243L 0.75 TCGA-EE-A29E-06 14 79117583 79117583 G A NRXN3 Missense_Mutation p.D6N 0.87 tolerated(0.09) probably_damaging(0.93) TCGA-EE-A29E-06 14 79117588 79117588 C T NRXN3 Silent p.F7F 0.89 TCGA-EE-A29E-06 14 79423658 79423658 G A NRXN3 Silent p.R410R 0.78 TCGA-EE-A29E-06 14 80963773 80963773 T G CEP128 3'UTR 0.89 TCGA-EE-A29E-06 14 81534600 81534600 A T TSHR Missense_Mutation p.Y82F 0.86 tolerated(0.51) probably_damaging(0.94) TCGA-EE-A29E-06 14 81534601 81534601 C T TSHR Silent p.Y82Y 0.84 TCGA-EE-A29E-06 14 88652128 88652128 C T KCNK10 Silent p.R461R 0.83 TCGA-EE-A29E-06 14 88729757 88729757 G A KCNK10 Missense_Mutation p.S64F 0.79 deleterious(0) benign(0.117) TCGA-EE-A29E-06 14 89178744 89178744 C T EML5 Missense_Mutation p.G510R 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 14 89181462 89181462 T A EML5 Missense_Mutation p.Y422F 0.82 tolerated(0.59) benign(0.004) TCGA-EE-A29E-06 14 91156014 91156014 A T TTC7B Missense_Mutation p.C274S 0.67 tolerated(1) benign(0.009) TCGA-EE-A29E-06 14 91636449 91636449 C T C14orf159 Silent p.F120F 0.74 TCGA-EE-A29E-06 14 91700725 91700725 C T GPR68 Missense_Mutation p.D224N 0.80 tolerated(0.49) benign(0.063) TCGA-EE-A29E-06 14 91774810 91774810 T A CCDC88C Missense_Mutation p.N964I 0.41 tolerated(0.24) benign(0.008) TCGA-EE-A29E-06 14 92159496 92159496 G A CATSPERB Missense_Mutation p.R269C 0.82 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A29E-06 14 94046624 94046624 G C UNC79 Missense_Mutation p.A678P 0.88 tolerated(0.09) possibly_damaging(0.566) TCGA-EE-A29E-06 14 94052986 94052986 C T UNC79 Missense_Mutation p.P773S 0.73 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 14 94750463 94750463 C T SERPINA10 Missense_Mutation p.E392K 0.94 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 14 94780692 94780692 A G SERPINA6 Silent p.T98T 0.86 TCGA-EE-A29E-06 14 96707878 96707878 G A BDKRB2 3'UTR 0.75 TCGA-EE-A29E-06 15 100331066 100331066 G T AC090825.1 5'Flank 0.26 TCGA-EE-A29E-06 15 100332311 100332311 G A AC090825.1 5'Flank 0.32 TCGA-EE-A29E-06 15 101114334 101114334 G A LINS Silent p.I248I 0.46 TCGA-EE-A29E-06 15 101549171 101549171 C T LRRK1 Missense_Mutation p.P298S 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 15 22368673 22368673 C T OR4M2 Missense_Mutation p.S33F 0.20 tolerated(0.5) benign(0) TCGA-EE-A29E-06 15 22933831 22933831 G A CYFIP1 Silent p.E250E 0.32 TCGA-EE-A29E-06 15 23931560 23931560 C T NDN Missense_Mutation p.E269K 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 15 24921162 24921162 C T NPAP1 Silent p.L50L 0.50 TCGA-EE-A29E-06 15 24923015 24923015 C T NPAP1 Silent p.F667F 0.46 TCGA-EE-A29E-06 15 25336855 25336855 T C SNORD116-23 5'Flank 0.43 TCGA-EE-A29E-06 15 25432688 25432688 G A SNORD115-10 RNA 0.31 TCGA-EE-A29E-06 15 25442574 25442574 G A SNORD115-14 3'Flank 0.44 TCGA-EE-A29E-06 15 25458714 25458714 C T SNORD115-22 3'Flank 0.44 TCGA-EE-A29E-06 15 25479460 25479460 G A SNORD115-35 RNA 0.36 TCGA-EE-A29E-06 15 25494412 25494412 A T SNORD115-43 RNA 0.40 TCGA-EE-A29E-06 15 25514957 25514957 G A SNORD115-48 RNA 0.31 TCGA-EE-A29E-06 15 25924663 25924663 G A ATP10A Missense_Mutation p.S1442F 0.40 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EE-A29E-06 15 26793000 26793000 G A GABRB3 Silent p.I454I 0.39 TCGA-EE-A29E-06 15 27777932 27777932 G A GABRG3 Missense_Mutation p.D437N 0.41 tolerated(0.39) probably_damaging(0.999) TCGA-EE-A29E-06 15 28424362 28424362 A G HERC2 Missense_Mutation p.V2982A 0.34 benign(0.408) TCGA-EE-A29E-06 15 28491994 28491994 G A HERC2 Silent p.L1095L 0.36 TCGA-EE-A29E-06 15 30012097 30012097 G A TJP1 Missense_Mutation p.P963S 0.34 tolerated_low_confidence(0.1) benign(0.15) TCGA-EE-A29E-06 15 30665306 30665306 G A CHRFAM7A Missense_Mutation p.P68L 0.28 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 15 33765646 33765646 C T RYR3 Silent p.I26I 0.38 TCGA-EE-A29E-06 15 33872249 33872249 C T RYR3 Silent p.I447I 0.45 TCGA-EE-A29E-06 15 34356319 34356319 C T CHRM5 Silent p.F467F 0.38 TCGA-EE-A29E-06 15 34376432 34376432 G A EMC7 3'UTR 0.54 TCGA-EE-A29E-06 15 35530205 35530205 G A ANP32AP1 RNA 0.19 TCGA-EE-A29E-06 15 38643766 38643766 C T SPRED1 Silent p.F412F 0.42 TCGA-EE-A29E-06 15 39874122 39874122 C T THBS1 Missense_Mutation p.P22S 0.38 tolerated_low_confidence(0.78) benign(0.001) TCGA-EE-A29E-06 15 39874921 39874921 A T THBS1 Missense_Mutation p.I199F 0.24 deleterious(0) benign(0.333) TCGA-EE-A29E-06 15 39874923 39874923 C T THBS1 Silent p.I199I 0.23 TCGA-EE-A29E-06 15 39880302 39880302 G A THBS1 Missense_Mutation p.G452S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 15 39880355 39880355 G A THBS1 Missense_Mutation p.M469I 0.32 tolerated(0.11) benign(0.014) TCGA-EE-A29E-06 15 39885655 39885655 G A THBS1 Missense_Mutation p.R1018K 0.43 tolerated(0.23) benign(0.063) TCGA-EE-A29E-06 15 39885656 39885656 G A THBS1 Silent p.R1018R 0.43 TCGA-EE-A29E-06 15 39910272 39910272 C T FSIP1 Missense_Mutation p.E455K 0.46 tolerated(0.19) benign(0.16) TCGA-EE-A29E-06 15 40093565 40093565 G A GPR176 Missense_Mutation p.P439L 0.34 deleterious_low_confidence(0.02) benign(0.005) TCGA-EE-A29E-06 15 40500938 40500938 C T BUB1B Missense_Mutation p.P704S 0.29 tolerated(0.17) benign(0.035) TCGA-EE-A29E-06 15 40590442 40590442 G A PLCB2 Silent p.T379T 0.40 TCGA-EE-A29E-06 15 40750727 40750727 C T BAHD1 Missense_Mutation p.P22S 0.34 tolerated_low_confidence(0.4) benign(0.011) TCGA-EE-A29E-06 15 40750728 40750728 C T BAHD1 Missense_Mutation p.P22L 0.33 deleterious_low_confidence(0.05) benign(0.23) TCGA-EE-A29E-06 15 41120715 41120715 T C PPP1R14D Missense_Mutation p.H42R 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.537) TCGA-EE-A29E-06 15 41797934 41797934 G A LTK Silent p.F558F 0.44 TCGA-EE-A29E-06 15 42019419 42019419 C T MGA Missense_Mutation p.P1158S 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 15 42111801 42111801 C T MAPKBP1 Missense_Mutation p.P818S 0.36 tolerated(0.39) benign(0.005) TCGA-EE-A29E-06 15 42363514 42363514 C T PLA2G4D Silent p.E561E 0.45 TCGA-EE-A29E-06 15 42364024 42364024 G A PLA2G4D Silent p.F507F 0.25 TCGA-EE-A29E-06 15 42858899 42858899 C T HAUS2 Missense_Mutation p.S198L 0.44 tolerated(0.32) possibly_damaging(0.634) TCGA-EE-A29E-06 15 43339380 43339380 G A UBR1 Silent p.F549F 0.47 TCGA-EE-A29E-06 15 43500525 43500525 G A EPB42 Silent p.F356F 0.39 TCGA-EE-A29E-06 15 43827025 43827025 G A PPIP5K1 Silent p.Y1383Y 0.42 TCGA-EE-A29E-06 15 44166470 44166470 C T FRMD5 Silent p.L442L 0.33 TCGA-EE-A29E-06 15 45052067 45052067 C A TRIM69 Missense_Mutation p.P320T 0.39 deleterious(0) possibly_damaging(0.555) TCGA-EE-A29E-06 15 45389917 45389917 G A DUOX2 Silent p.L1196L 0.35 TCGA-EE-A29E-06 15 45777479 45777479 G A SLC30A4 Missense_Mutation p.S391F 0.44 tolerated(0.08) benign(0.024) TCGA-EE-A29E-06 15 48060830 48060830 C T SEMA6D Silent p.I606I 0.40 TCGA-EE-A29E-06 15 48499970 48499970 C T SLC12A1 Silent p.T18T 0.26 TCGA-EE-A29E-06 15 49659779 49659779 C T FAM227B Silent p.E379E 0.44 TCGA-EE-A29E-06 15 49775424 49775424 G A FGF7 Missense_Mutation p.M121I 0.37 tolerated(0.21) possibly_damaging(0.694) TCGA-EE-A29E-06 15 49907434 49907434 G A FAM227B 5'UTR 0.37 TCGA-EE-A29E-06 15 50193414 50193414 C T ATP8B4 Missense_Mutation p.G722R 0.42 tolerated(0.36) possibly_damaging(0.876) TCGA-EE-A29E-06 15 50212553 50212553 C T ATP8B4 Missense_Mutation p.D605N 0.41 tolerated(0.09) benign(0.032) TCGA-EE-A29E-06 15 50336873 50336873 G A ATP8B4 Missense_Mutation p.S73F 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 15 50534350 50534350 C T HDC 3'UTR 0.33 TCGA-EE-A29E-06 15 50534745 50534745 G A HDC Silent p.S567S 0.46 TCGA-EE-A29E-06 15 51350237 51350237 G A TNFAIP8L3 Silent p.H240H 0.39 TCGA-EE-A29E-06 15 51795147 51795147 G A DMXL2 Missense_Mutation p.P950S 0.32 tolerated(0.37) benign(0.028) TCGA-EE-A29E-06 15 52497080 52497080 C T MYO5C Missense_Mutation p.R1601K 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29E-06 15 54624244 54624244 G A UNC13C Missense_Mutation p.E1477K 0.54 deleterious_low_confidence(0.04) possibly_damaging(0.504) TCGA-EE-A29E-06 15 54793064 54793064 C T UNC13C Missense_Mutation p.S1730F 0.49 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A29E-06 15 54919106 54919106 G A UNC13C Missense_Mutation p.R2147Q 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 15 55664175 55664175 G A CCPG1 Silent p.A174A 0.36 TCGA-EE-A29E-06 15 58855704 58855704 G A LIPC Silent p.L390L 0.39 TCGA-EE-A29E-06 15 58855705 58855705 G A LIPC Missense_Mutation p.G391S 0.41 tolerated(0.75) benign(0.009) TCGA-EE-A29E-06 15 59063690 59063690 G A FAM63B Silent p.E32E 0.41 TCGA-EE-A29E-06 15 60919495 60919495 G A RORA Nonsense_Mutation p.R27* 0.36 TCGA-EE-A29E-06 15 63054609 63054609 C T TLN2 Missense_Mutation p.H1640Y 0.37 deleterious(0) benign(0.044) TCGA-EE-A29E-06 15 63128178 63128178 C T TLN2 Missense_Mutation p.S2427L 0.44 deleterious(0) possibly_damaging(0.491) TCGA-EE-A29E-06 15 65502178 65502178 G A CILP 5'UTR 0.60 TCGA-EE-A29E-06 15 65676627 65676627 G A IGDCC4 Missense_Mutation p.P1158L 0.37 tolerated_low_confidence(0.19) benign(0.002) TCGA-EE-A29E-06 15 65899684 65899684 G A VWA9 Intron 0.30 TCGA-EE-A29E-06 15 65899772 65899772 G A VWA9 Intron 0.43 TCGA-EE-A29E-06 15 66797182 66797182 A G RPL4 5'UTR 0.30 TCGA-EE-A29E-06 15 69076829 69076829 G A ANP32A Missense_Mutation p.L145F 0.37 deleterious(0.02) possibly_damaging(0.752) TCGA-EE-A29E-06 15 69238249 69238249 C T SPESP1 Missense_Mutation p.P126S 0.57 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 15 71124473 71124473 G A LARP6 Missense_Mutation p.P465L 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29E-06 15 72037445 72037445 G A THSD4 Missense_Mutation p.G636E 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 15 72190967 72190967 G A MYO9A Missense_Mutation p.R1293C 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 15 73994885 73994885 C T CD276 Silent p.F123F 0.28 TCGA-EE-A29E-06 15 74427116 74427116 G A ISLR2 Missense_Mutation p.G674E 0.40 tolerated(1) benign(0.001) TCGA-EE-A29E-06 15 74472508 74472508 C T STRA6 Nonsense_Mutation p.W678* 0.30 TCGA-EE-A29E-06 15 74659852 74659852 C T CYP11A1 Silent p.E25E 0.39 TCGA-EE-A29E-06 15 75042543 75042543 C T CYP1A2 Missense_Mutation p.S155F 0.36 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A29E-06 15 75042859 75042859 C T CYP1A2 Silent p.F260F 0.43 TCGA-EE-A29E-06 15 75044163 75044163 C T CYP1A2 Missense_Mutation p.P337L 0.39 deleterious(0) probably_damaging(0.922) TCGA-EE-A29E-06 15 75044176 75044176 G A CYP1A2 Silent p.R341R 0.37 TCGA-EE-A29E-06 15 75143738 75143738 G A SCAMP2 Missense_Mutation p.A143V 0.32 tolerated(1) benign(0.033) TCGA-EE-A29E-06 15 75310764 75310764 G A SCAMP5 Nonsense_Mutation p.W134* 0.42 TCGA-EE-A29E-06 15 75311250 75311250 G A SCAMP5 Missense_Mutation p.A212T 0.55 tolerated(0.12) benign(0.008) TCGA-EE-A29E-06 15 75816585 75816585 G A PTPN9 Missense_Mutation p.R88C 0.41 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A29E-06 15 78316844 78316844 G A TBC1D2B Missense_Mutation p.S375F 0.28 deleterious(0) probably_damaging(0.976) TCGA-EE-A29E-06 15 78416051 78416051 G A CIB2 Missense_Mutation p.L28F 0.35 deleterious(0) probably_damaging(0.921) TCGA-EE-A29E-06 15 79058381 79058381 G A ADAMTS7 Missense_Mutation p.S1291F 0.35 tolerated(0.11) benign(0.243) TCGA-EE-A29E-06 15 79058733 79058733 G A ADAMTS7 Silent p.L1174L 0.56 TCGA-EE-A29E-06 15 79265704 79265704 C T RASGRF1 Missense_Mutation p.E1201K 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A29E-06 15 81235313 81235313 G A KIAA1199 Missense_Mutation p.E1243K 0.40 tolerated(0.34) benign(0.184) TCGA-EE-A29E-06 15 82564131 82564131 C T FAM154B Missense_Mutation p.P81S 0.41 deleterious(0.04) probably_damaging(0.989) TCGA-EE-A29E-06 15 83349688 83349688 G A AP3B2 Silent p.L224L 0.40 TCGA-EE-A29E-06 15 83933105 83933105 C T BNC1 Missense_Mutation p.E300K 0.40 tolerated(0.06) benign(0.242) TCGA-EE-A29E-06 15 84237407 84237407 G A SH3GL3 Missense_Mutation p.G105E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 15 84373178 84373178 C T ADAMTSL3 Missense_Mutation p.P36L 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 15 84690332 84690332 G A ADAMTSL3 Missense_Mutation p.D1482N 0.47 tolerated(0.43) possibly_damaging(0.891) TCGA-EE-A29E-06 15 85448872 85448872 G A SLC28A1 Missense_Mutation p.E236K 0.24 tolerated(0.71) benign(0.011) TCGA-EE-A29E-06 15 86940627 86940627 G A AGBL1 Missense_Mutation p.R756Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 15 88678470 88678470 C T NTRK3 Missense_Mutation p.G356R 0.25 tolerated(0.15) benign(0.222) TCGA-EE-A29E-06 15 89381998 89381998 C T ACAN Missense_Mutation p.P59S 0.41 deleterious(0.02) unknown(0) TCGA-EE-A29E-06 15 89755083 89755083 T A RLBP1 Missense_Mutation p.E192V 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 15 89870573 89870573 G A POLG Missense_Mutation p.H420Y 0.39 deleterious(0) probably_damaging(0.964) TCGA-EE-A29E-06 15 90349337 90349337 C T ANPEP Missense_Mutation p.E160K 0.41 deleterious(0.01) possibly_damaging(0.783) TCGA-EE-A29E-06 15 91478452 91478452 C T UNC45A 5'Flank 0.78 TCGA-EE-A29E-06 15 91810784 91810784 G A SV2B Splice_Site p.X374_splice 0.41 TCGA-EE-A29E-06 15 92647532 92647532 G A SLCO3A1 Missense_Mutation p.D257N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 15 93557966 93557966 C T CHD2 Missense_Mutation p.P1578L 0.45 tolerated(0.18) benign(0) TCGA-EE-A29E-06 15 93567810 93567810 C T CHD2 Missense_Mutation p.R1788C 0.41 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-EE-A29E-06 16 11063148 11063148 C T CLEC16A Silent p.V158V 0.19 TCGA-EE-A29E-06 16 11114066 11114066 C T CLEC16A Silent p.I440I 0.31 TCGA-EE-A29E-06 16 1143829 1143829 T C C1QTNF8 Missense_Mutation p.N144S 0.24 deleterious(0.01) benign(0.153) TCGA-EE-A29E-06 16 11846618 11846618 G A ZC3H7A Missense_Mutation p.S878F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 1262102 1262102 G A CACNA1H Missense_Mutation p.E1575K 0.38 deleterious(0.01) possibly_damaging(0.524) TCGA-EE-A29E-06 16 1292151 1292151 G A TPSAB1 Silent p.E246E 0.35 TCGA-EE-A29E-06 16 1391307 1391307 C T BAIAP3 Missense_Mutation p.P218L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 16 1398005 1398005 G A BAIAP3 Missense_Mutation p.E1081K 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 14704660 14704660 G A PARN Missense_Mutation p.P132L 0.29 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A29E-06 16 1476274 1476274 C T C16orf91 Missense_Mutation p.A117T 0.29 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-EE-A29E-06 16 1476275 1476275 C T C16orf91 Silent p.R116R 0.27 TCGA-EE-A29E-06 16 15457820 15457820 G A NPIPA5 Missense_Mutation p.P250L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 16 1551718 1551718 C T TELO2 Silent p.I472I 0.29 TCGA-EE-A29E-06 16 15661858 15661858 C T C16orf45 Silent p.L83L 0.48 TCGA-EE-A29E-06 16 15710936 15710936 G A KIAA0430 Missense_Mutation p.T1017I 0.47 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A29E-06 16 15728713 15728713 G A KIAA0430 Missense_Mutation p.L303F 0.37 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A29E-06 16 15872668 15872668 C T MYH11 Silent p.T260T 0.33 TCGA-EE-A29E-06 16 16101672 16101672 G A ABCC1 Splice_Site p.X17_splice 0.31 TCGA-EE-A29E-06 16 16101673 16101673 G T ABCC1 Missense_Mutation p.D17Y 0.35 deleterious(0) possibly_damaging(0.836) TCGA-EE-A29E-06 16 16286741 16286741 G A ABCC6 Silent p.F459F 0.33 TCGA-EE-A29E-06 16 16297332 16297332 G A ABCC6 Silent p.F311F 0.36 TCGA-EE-A29E-06 16 18839433 18839433 G A SMG1 Missense_Mutation p.P3221S 0.38 tolerated(0.41) probably_damaging(0.996) TCGA-EE-A29E-06 16 19051611 19051611 G A TMC7 Missense_Mutation p.E394K 0.48 tolerated(0.36) benign(0.004) TCGA-EE-A29E-06 16 19051670 19051670 G A TMC7 Silent p.V413V 0.42 TCGA-EE-A29E-06 16 19184168 19184168 C T SYT17 Intron 0.43 TCGA-EE-A29E-06 16 19451968 19451968 G A TMC5 Missense_Mutation p.G203E 0.32 tolerated_low_confidence(0.2) benign(0.014) TCGA-EE-A29E-06 16 2000917 2000917 T A RPL3L Missense_Mutation p.K143N 0.48 deleterious(0.03) possibly_damaging(0.891) TCGA-EE-A29E-06 16 20430799 20430799 T G ACSM5 Intron 0.35 TCGA-EE-A29E-06 16 20442628 20442628 C T ACSM5 Silent p.F431F 0.36 TCGA-EE-A29E-06 16 2050212 2050212 G A ZNF598 Silent p.P446P 0.43 TCGA-EE-A29E-06 16 20554476 20554476 C T ACSM2B Missense_Mutation p.D464N 0.21 deleterious(0) probably_damaging(0.944) TCGA-EE-A29E-06 16 20565207 20565207 C T ACSM2B Missense_Mutation p.G211E 0.42 tolerated(0.06) benign(0.091) TCGA-EE-A29E-06 16 20944715 20944715 G A DNAH3 Missense_Mutation p.L4038F 0.42 tolerated(0.66) benign(0.012) TCGA-EE-A29E-06 16 2096242 2096242 G A NTHL1 Missense_Mutation p.P89S 0.30 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29E-06 16 20981148 20981148 C T DNAH3 Missense_Mutation p.M2808I 0.42 tolerated(1) benign(0) TCGA-EE-A29E-06 16 2100463 2100463 C T TSC2 Silent p.V67V 0.36 TCGA-EE-A29E-06 16 21261089 21261089 C T ANKS4B Missense_Mutation p.P68S 0.37 deleterious(0.03) probably_damaging(0.984) TCGA-EE-A29E-06 16 21416211 21416211 G A NPIPB3 Missense_Mutation p.P166L 0.21 probably_damaging(0.942) TCGA-EE-A29E-06 16 2159291 2159291 G A PKD1 Silent p.A1959A 0.50 TCGA-EE-A29E-06 16 2159811 2159811 G A PKD1 Missense_Mutation p.P1786L 0.38 benign(0.075) TCGA-EE-A29E-06 16 21658637 21658637 C T IGSF6 Missense_Mutation p.G82R 0.27 tolerated(0.2) benign(0.284) TCGA-EE-A29E-06 16 21734277 21734277 C T OTOA Missense_Mutation p.P620S 0.47 deleterious(0.03) benign(0.251) TCGA-EE-A29E-06 16 21747593 21747593 C T OTOA Silent p.I771I 0.44 TCGA-EE-A29E-06 16 22269973 22269973 C T EEF2K Silent p.S396S 0.44 TCGA-EE-A29E-06 16 2239522 2239522 C T CASKIN1 Silent p.E96E 0.60 TCGA-EE-A29E-06 16 23226032 23226032 G A SCNN1G Splice_Site p.X498_splice 0.43 TCGA-EE-A29E-06 16 23360097 23360097 C T SCNN1B Silent p.F59F 0.54 TCGA-EE-A29E-06 16 23379199 23379199 C T SCNN1B Missense_Mutation p.P267S 0.38 deleterious(0.02) possibly_damaging(0.817) TCGA-EE-A29E-06 16 23444872 23444872 A G COG7 Silent p.A268A 0.36 TCGA-EE-A29E-06 16 24366154 24366154 G A CACNG3 Missense_Mutation p.R99Q 0.34 deleterious(0.01) possibly_damaging(0.871) TCGA-EE-A29E-06 16 24873930 24873930 G A SLC5A11 Silent p.V48V 0.22 TCGA-EE-A29E-06 16 24883514 24883514 T C SLC5A11 Missense_Mutation p.F116L 0.34 deleterious(0.01) benign(0.107) TCGA-EE-A29E-06 16 24950850 24950850 G A ARHGAP17 Missense_Mutation p.S520F 0.33 deleterious(0) possibly_damaging(0.702) TCGA-EE-A29E-06 16 2514539 2514539 T G C16orf59 Missense_Mutation p.L391R 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 2548287 2548287 C T TBC1D24 Silent p.I344I 0.44 TCGA-EE-A29E-06 16 26147171 26147171 G A HS3ST4 Missense_Mutation p.D325N 0.47 tolerated(0.19) possibly_damaging(0.708) TCGA-EE-A29E-06 16 27480632 27480632 G A GTF3C1 Missense_Mutation p.P1685L 0.62 tolerated(0.19) benign(0.159) TCGA-EE-A29E-06 16 27504525 27504525 G T GTF3C1 Nonsense_Mutation p.Y957* 0.11 TCGA-EE-A29E-06 16 27506184 27506184 G A GTF3C1 Missense_Mutation p.P893L 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A29E-06 16 2882090 2882090 C T ZG16B Missense_Mutation p.P186L 0.37 deleterious(0) possibly_damaging(0.701) TCGA-EE-A29E-06 16 28892244 28892244 C T ATP2A1 Silent p.A76A 0.44 TCGA-EE-A29E-06 16 28913642 28913642 C T ATP2A1 Missense_Mutation p.P820L 0.39 tolerated(0.13) possibly_damaging(0.7) TCGA-EE-A29E-06 16 29814139 29814139 C T KIF22 Missense_Mutation p.L444F 0.31 deleterious(0.03) possibly_damaging(0.642) TCGA-EE-A29E-06 16 29891226 29891226 G A SEZ6L2 Missense_Mutation p.P511L 0.39 tolerated(0.17) benign(0.223) TCGA-EE-A29E-06 16 29998371 29998371 C T TAOK2 Silent p.I926I 0.33 TCGA-EE-A29E-06 16 29998372 29998372 C T TAOK2 Missense_Mutation p.P927S 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A29E-06 16 30002405 30002405 C T TAOK2 3'Flank 0.43 TCGA-EE-A29E-06 16 30486649 30486649 G A ITGAL Missense_Mutation p.E63K 0.31 deleterious(0) possibly_damaging(0.54) TCGA-EE-A29E-06 16 3063838 3063838 G A CLDN9 Missense_Mutation p.E159K 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 16 30664712 30664712 C T PRR14 Silent p.F177F 0.38 TCGA-EE-A29E-06 16 30667698 30667698 C T PRR14 3'UTR 0.62 TCGA-EE-A29E-06 16 30740727 30740727 C T SRCAP Silent p.P1987P 0.27 TCGA-EE-A29E-06 16 30740728 30740728 C T SRCAP Missense_Mutation p.P1988S 0.30 probably_damaging(0.968) TCGA-EE-A29E-06 16 30990573 30990573 C T SETD1A Missense_Mutation p.P1156S 0.42 unknown(0) TCGA-EE-A29E-06 16 31004130 31004130 G A STX1B 3'UTR 0.34 TCGA-EE-A29E-06 16 31087769 31087769 G A ZNF646 Missense_Mutation p.D42N 0.46 tolerated(0.2) benign(0.011) TCGA-EE-A29E-06 16 3119311 3119311 G A IL32 Silent p.E174E 0.23 TCGA-EE-A29E-06 16 31367986 31367986 C T ITGAX Nonsense_Mutation p.Q62* 0.36 TCGA-EE-A29E-06 16 3140504 3140504 C T ZSCAN10 Missense_Mutation p.G256S 0.44 tolerated(0.19) benign(0.011) TCGA-EE-A29E-06 16 3142078 3142078 C T ZSCAN10 Silent p.Q157Q 0.50 TCGA-EE-A29E-06 16 3142166 3142166 C T ZSCAN10 Missense_Mutation p.R128Q 0.41 tolerated(0.09) benign(0.038) TCGA-EE-A29E-06 16 31427896 31427896 G A ITGAD Missense_Mutation p.D810N 0.44 tolerated(0.06) probably_damaging(0.966) TCGA-EE-A29E-06 16 3254246 3254246 C T OR1F1 5'Flank 0.41 TCGA-EE-A29E-06 16 3254585 3254585 C T OR1F1 Silent p.F113F 0.33 TCGA-EE-A29E-06 16 3299603 3299603 C T MEFV Missense_Mutation p.S363N 0.55 tolerated(0.29) benign(0.004) TCGA-EE-A29E-06 16 3306475 3306475 G A MEFV Missense_Mutation p.S38F 0.41 tolerated(0.5) benign(0.076) TCGA-EE-A29E-06 16 3349419 3349419 C T TIGD7 Nonsense_Mutation p.W399* 0.42 TCGA-EE-A29E-06 16 33647401 33647401 T G RP11-812E19.9 Missense_Mutation p.I67L 0.23 tolerated_low_confidence(0.15) benign(0.001) TCGA-EE-A29E-06 16 3486449 3486449 C T ZNF597 Missense_Mutation p.R417Q 0.44 tolerated(0.38) benign(0.126) TCGA-EE-A29E-06 16 426150 426150 G A TMEM8A Silent p.L404L 0.33 TCGA-EE-A29E-06 16 426584 426584 G A TMEM8A Silent p.P288P 0.38 TCGA-EE-A29E-06 16 4409336 4409336 G A CORO7 Silent p.F767F 0.20 TCGA-EE-A29E-06 16 4780033 4780033 G A ANKS3 Missense_Mutation p.H40Y 0.40 tolerated(0.1) benign(0.156) TCGA-EE-A29E-06 16 48119551 48119551 C T ABCC12 Missense_Mutation p.E1261K 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 16 49412446 49412446 G A C16orf78 Silent p.K112K 0.40 TCGA-EE-A29E-06 16 49669584 49669584 G A ZNF423 Missense_Mutation p.S1160L 0.32 deleterious(0.04) benign(0.014) TCGA-EE-A29E-06 16 49764731 49764731 G A ZNF423 Silent p.F76F 0.42 TCGA-EE-A29E-06 16 50100334 50100334 G A HEATR3 Silent p.L65L 0.56 TCGA-EE-A29E-06 16 50345624 50345624 G A ADCY7 Nonsense_Mutation p.W792* 0.32 TCGA-EE-A29E-06 16 5053556 5053556 C T SEC14L5 Silent p.F428F 0.31 TCGA-EE-A29E-06 16 50659401 50659401 C T NKD1 Silent p.L124L 0.26 TCGA-EE-A29E-06 16 50707519 50707519 C T SNX20 Missense_Mutation p.G250E 0.27 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A29E-06 16 50745440 50745440 C A NOD2 Missense_Mutation p.L540I 0.45 deleterious(0.03) benign(0.078) TCGA-EE-A29E-06 16 51174059 51174059 G A SALL1 Nonsense_Mutation p.Q692* 0.40 TCGA-EE-A29E-06 16 51174308 51174308 G A SALL1 Missense_Mutation p.P609S 0.40 tolerated(0.58) benign(0.001) TCGA-EE-A29E-06 16 56913534 56913534 C T SLC12A3 Silent p.C472C 0.35 TCGA-EE-A29E-06 16 57113139 57113139 G A NLRC5 Silent p.A1724A 0.39 TCGA-EE-A29E-06 16 57552139 57552139 C T CCDC102A Silent p.R363R 0.34 TCGA-EE-A29E-06 16 57609486 57609486 G A GPR114 3'UTR 0.45 TCGA-EE-A29E-06 16 58592446 58592446 G A CNOT1 Missense_Mutation p.P755S 0.39 tolerated(0.31) benign(0.002) TCGA-EE-A29E-06 16 61747770 61747770 C T CDH8 Silent p.P543P 0.40 TCGA-EE-A29E-06 16 61859063 61859063 G A CDH8 Missense_Mutation p.P230S 0.26 tolerated(0.36) benign(0.014) TCGA-EE-A29E-06 16 632972 632972 C T PIGQ Missense_Mutation p.P541S 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-EE-A29E-06 16 65032559 65032559 C T CDH11 Silent p.S143S 0.38 TCGA-EE-A29E-06 16 66436692 66436692 G A CDH5 Missense_Mutation p.D659N 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 66997264 66997264 G A CES3 Missense_Mutation p.D89N 0.41 tolerated(0.08) probably_damaging(0.989) TCGA-EE-A29E-06 16 67214354 67214354 G A KIAA0895L Missense_Mutation p.P54S 0.44 tolerated_low_confidence(0.09) benign(0.009) TCGA-EE-A29E-06 16 68309089 68309089 C T SLC7A6 Missense_Mutation p.P154S 0.41 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A29E-06 16 68405192 68405192 G A SMPD3 Missense_Mutation p.S298F 0.41 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 16 68405554 68405554 G A SMPD3 Silent p.T177T 0.19 TCGA-EE-A29E-06 16 68857521 68857521 C T CDH1 Missense_Mutation p.A719V 0.34 tolerated(0.52) benign(0.126) TCGA-EE-A29E-06 16 69778779 69778779 G A NOB1 Silent p.L322L 0.46 TCGA-EE-A29E-06 16 70506488 70506488 C T FUK Silent p.F462F 0.31 TCGA-EE-A29E-06 16 70557456 70557456 C T COG4 5'UTR 0.44 TCGA-EE-A29E-06 16 70562829 70562829 C T SF3B3 Missense_Mutation p.R42C 0.58 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29E-06 16 70605667 70605667 C T SF3B3 Missense_Mutation p.P1202L 0.51 tolerated(0.12) benign(0.01) TCGA-EE-A29E-06 16 70605668 70605668 C T SF3B3 Silent p.P1202P 0.54 TCGA-EE-A29E-06 16 70605710 70605710 C T SF3B3 Silent p.A1216A 0.28 TCGA-EE-A29E-06 16 70866801 70866801 G A HYDIN Silent p.L4617L 0.41 TCGA-EE-A29E-06 16 70871596 70871596 C T HYDIN Missense_Mutation p.M4413I 0.42 benign(0.216) TCGA-EE-A29E-06 16 70896022 70896022 C T HYDIN Silent p.G3902G 0.40 TCGA-EE-A29E-06 16 70917925 70917925 C T HYDIN Missense_Mutation p.G3293R 0.48 probably_damaging(0.991) TCGA-EE-A29E-06 16 70928360 70928360 G A HYDIN Silent p.I3080I 0.16 TCGA-EE-A29E-06 16 70942224 70942224 C T HYDIN Missense_Mutation p.G2776E 0.46 probably_damaging(0.988) TCGA-EE-A29E-06 16 70995899 70995899 C T HYDIN Silent p.E1977E 0.67 TCGA-EE-A29E-06 16 71113793 71113793 G A HYDIN Missense_Mutation p.S578F 0.35 probably_damaging(0.983) TCGA-EE-A29E-06 16 711461 711461 C T WDR90 Silent p.A1211A 0.39 TCGA-EE-A29E-06 16 71602055 71602055 C T TAT Missense_Mutation p.D453N 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 16 71604186 71604186 G C TAT Missense_Mutation p.L343V 0.42 tolerated(0.43) benign(0.004) TCGA-EE-A29E-06 16 72094655 72094655 G A HP Missense_Mutation p.D363N 0.38 deleterious(0.03) benign(0.341) TCGA-EE-A29E-06 16 72094836 72094836 G A HP 3'UTR 0.31 TCGA-EE-A29E-06 16 72107799 72107799 G A HPR Missense_Mutation p.G5E 0.44 deleterious_low_confidence(0.03) benign(0.272) TCGA-EE-A29E-06 16 72153731 72153731 T A PMFBP1 Intron 0.38 TCGA-EE-A29E-06 16 72188229 72188229 A T PMFBP1 Missense_Mutation p.F99I 0.38 tolerated(0.29) benign(0.109) TCGA-EE-A29E-06 16 72829897 72829897 G A ZFHX3 Silent p.P2228P 0.39 TCGA-EE-A29E-06 16 72830485 72830485 C T ZFHX3 Silent p.L2032L 0.40 TCGA-EE-A29E-06 16 74908231 74908231 G A WDR59 Missense_Mutation p.S934L 0.42 tolerated(0.12) benign(0.187) TCGA-EE-A29E-06 16 75033985 75033985 C T ZNRF1 Missense_Mutation p.S139L 0.33 deleterious(0.03) benign(0.084) TCGA-EE-A29E-06 16 75513312 75513312 G A CHST6 Missense_Mutation p.P139S 0.29 tolerated(0.33) benign(0.014) TCGA-EE-A29E-06 16 76350369 76350369 G A CNTNAP4 Missense_Mutation p.E24K 0.43 tolerated(0.08) probably_damaging(0.93) TCGA-EE-A29E-06 16 76483656 76483656 C T CNTNAP4 Intron 0.22 TCGA-EE-A29E-06 16 76528864 76528864 G A CNTNAP4 Missense_Mutation p.G640E 0.41 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29E-06 16 77353842 77353842 G A ADAMTS18 Silent p.F812F 0.32 TCGA-EE-A29E-06 16 77356335 77356335 C T ADAMTS18 Silent p.K687K 0.35 TCGA-EE-A29E-06 16 77775526 77775526 C T NUDT7 Silent p.F132F 0.40 TCGA-EE-A29E-06 16 77918618 77918618 G A VAT1L Silent p.R332R 0.38 TCGA-EE-A29E-06 16 78064472 78064472 G A CLEC3A Missense_Mutation p.E119K 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 81134836 81134836 G A GCSH 5'Flank 0.37 TCGA-EE-A29E-06 16 818649 818649 G A MSLN Silent p.E603E 0.42 TCGA-EE-A29E-06 16 82069189 82069189 C T HSD17B2 Missense_Mutation p.P54S 0.25 tolerated(0.43) benign(0.031) TCGA-EE-A29E-06 16 82069190 82069190 C G HSD17B2 Missense_Mutation p.P54R 0.25 tolerated(0.35) benign(0.177) TCGA-EE-A29E-06 16 83065665 83065665 A G CDH13 Missense_Mutation p.S117G 0.54 deleterious(0.03) benign(0.114) TCGA-EE-A29E-06 16 84213039 84213039 G A TAF1C Silent p.P706P 0.38 TCGA-EE-A29E-06 16 84227647 84227647 G A ADAD2 Missense_Mutation p.E152K 0.37 tolerated_low_confidence(0.84) benign(0.047) TCGA-EE-A29E-06 16 84494096 84494096 G A ATP2C2 Intron 0.40 TCGA-EE-A29E-06 16 85682309 85682309 C T GSE1 Silent p.I126I 0.42 TCGA-EE-A29E-06 16 87367697 87367697 G A FBXO31 Missense_Mutation p.R398W 0.16 tolerated(0.05) benign(0.424) TCGA-EE-A29E-06 16 8995939 8995939 G A USP7 Missense_Mutation p.H683Y 0.38 tolerated(0.18) benign(0.018) TCGA-EE-A29E-06 16 90104193 90104193 C T GAS8 Silent p.V316V 0.43 TCGA-EE-A29E-06 16 90161575 90161575 G A TUBB8P7 RNA 0.40 TCGA-EE-A29E-06 16 960943 960943 G A LMF1 Silent p.I217I 0.46 TCGA-EE-A29E-06 16 9857186 9857186 C T GRIN2A Silent p.L1405L 0.38 TCGA-EE-A29E-06 16 9857582 9857582 C T GRIN2A Silent p.Q1273Q 0.54 TCGA-EE-A29E-06 16 9857805 9857805 G A GRIN2A Missense_Mutation p.P1199L 0.28 tolerated(0.24) benign(0.244) TCGA-EE-A29E-06 16 9862887 9862887 C T GRIN2A Missense_Mutation p.E806K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 16 9892321 9892321 C T GRIN2A Silent p.G723G 0.46 TCGA-EE-A29E-06 17 10258066 10258066 G A MYH13 Silent p.F312F 0.71 TCGA-EE-A29E-06 17 10314225 10314225 C T MYH8 Missense_Mutation p.E486K 0.83 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29E-06 17 10356594 10356594 G A MYH4 Silent p.L996L 0.79 TCGA-EE-A29E-06 17 10357094 10357094 C T MYH4 Missense_Mutation p.E934K 0.82 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 17 10364263 10364263 C T MYH4 Missense_Mutation p.E373K 0.87 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 17 10395650 10395650 C T MYH1 3'UTR 0.85 TCGA-EE-A29E-06 17 10401200 10401200 C T MYH1 Missense_Mutation p.E1406K 0.80 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A29E-06 17 10404024 10404024 C T MYH1 Missense_Mutation p.E1262K 0.87 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 17 10408756 10408756 G A MYH1 Silent p.L749L 0.80 TCGA-EE-A29E-06 17 10419944 10419944 C T MYH1 Missense_Mutation p.E6K 0.83 deleterious(0.01) benign(0.095) TCGA-EE-A29E-06 17 10428095 10428095 C T MYH2 Silent p.R1650R 0.83 TCGA-EE-A29E-06 17 10440695 10440695 G A MYH2 Silent p.H584H 0.84 TCGA-EE-A29E-06 17 10546172 10546172 G A MYH3 Silent p.L518L 0.82 TCGA-EE-A29E-06 17 11535903 11535903 G A DNAH9 Splice_Site p.X507_splice 0.73 TCGA-EE-A29E-06 17 11671837 11671837 C T DNAH9 Missense_Mutation p.S2413F 0.88 possibly_damaging(0.572) TCGA-EE-A29E-06 17 12649381 12649381 G A MYOCD Missense_Mutation p.D373N 0.83 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 17 1542987 1542987 G A SCARF1 Missense_Mutation p.P397S 1.00 tolerated(0.08) benign(0.024) TCGA-EE-A29E-06 17 1631537 1631537 C T WDR81 Missense_Mutation p.P1095L 0.88 tolerated(0.69) benign(0.013) TCGA-EE-A29E-06 17 16725386 16725386 C T AC022596.6 RNA 0.76 TCGA-EE-A29E-06 17 16843016 16843016 C T TNFRSF13B Missense_Mutation p.E243K 0.86 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29E-06 17 17480299 17480299 G A PEMT Missense_Mutation p.P47S 0.86 tolerated(0.4) benign(0.015) TCGA-EE-A29E-06 17 17697975 17697975 C A RAI1 Silent p.S571S 0.84 TCGA-EE-A29E-06 17 17701219 17701219 C T RAI1 Missense_Mutation p.P1653S 0.91 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29E-06 17 18042907 18042907 C T MYO15A Silent p.F1731F 0.71 TCGA-EE-A29E-06 17 2264968 2264968 C T SGSM2 Silent p.R57R 0.88 TCGA-EE-A29E-06 17 2264969 2264969 C T SGSM2 Missense_Mutation p.R58C 0.89 deleterious(0.01) benign(0.3) TCGA-EE-A29E-06 17 2290863 2290863 G A MNT Missense_Mutation p.P361S 0.87 deleterious(0) possibly_damaging(0.783) TCGA-EE-A29E-06 17 2405514 2405514 G A METTL16 Silent p.L38L 0.86 TCGA-EE-A29E-06 17 27308743 27308743 G A SEZ6 Missense_Mutation p.P124S 0.75 tolerated(0.11) possibly_damaging(0.715) TCGA-EE-A29E-06 17 27581346 27581346 G A CRYBA1 Silent p.S209S 0.81 TCGA-EE-A29E-06 17 28512481 28512481 C T NSRP1 Missense_Mutation p.P489L 0.83 tolerated(0.19) benign(0.001) TCGA-EE-A29E-06 17 2923814 2923814 C T RAP1GAP2 Missense_Mutation p.P559L 0.55 deleterious(0) probably_damaging(0.946) TCGA-EE-A29E-06 17 29283361 29283361 G A ADAP2 Missense_Mutation p.G329R 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 17 2966031 2966031 G A OR1D5 Silent p.L291L 0.45 TCGA-EE-A29E-06 17 2966465 2966465 G A OR1D5 Missense_Mutation p.S146F 0.44 tolerated(0.14) benign(0.008) TCGA-EE-A29E-06 17 31323939 31323939 G A SPACA3 Missense_Mutation p.G141E 0.74 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 17 3301102 3301102 G A OR1E1 Silent p.I201I 0.82 TCGA-EE-A29E-06 17 33503053 33503053 G A UNC45B Silent p.K677K 0.80 TCGA-EE-A29E-06 17 33513464 33513464 C T UNC45B Silent p.I894I 0.35 TCGA-EE-A29E-06 17 33513465 33513465 C T UNC45B Silent p.L895L 0.35 TCGA-EE-A29E-06 17 33513646 33513646 C T UNC45B 3'UTR 0.92 TCGA-EE-A29E-06 17 33679994 33679994 C T SLFN11 Missense_Mutation p.G696E 0.87 deleterious(0) probably_damaging(0.976) TCGA-EE-A29E-06 17 33690076 33690076 C T SLFN11 Missense_Mutation p.D251N 0.83 tolerated(0.23) benign(0.088) TCGA-EE-A29E-06 17 33849704 33849704 C T SLFN12L 5'UTR 0.88 TCGA-EE-A29E-06 17 34199360 34199360 C T CCL5 3'UTR 0.89 TCGA-EE-A29E-06 17 34499269 34499269 C A TBC1D3B Missense_Mutation p.D148Y 0.71 deleterious(0.02) benign(0.33) TCGA-EE-A29E-06 17 35345953 35345953 C T AATF Silent p.V361V 0.86 TCGA-EE-A29E-06 17 36375118 36375118 G A RP11-1407O15.2 Missense_Mutation p.P134S 0.27 TCGA-EE-A29E-06 17 36486741 36486741 G A GPR179 Missense_Mutation p.S904F 1.00 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 17 36486905 36486905 C T GPR179 Silent p.K849K 0.86 TCGA-EE-A29E-06 17 36704930 36704930 C T SRCIN1 Missense_Mutation p.E1045K 0.91 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A29E-06 17 37199453 37199453 A T LRRC37A11P Intron 0.80 TCGA-EE-A29E-06 17 37879848 37879848 C T ERBB2 Silent p.L715L 0.83 TCGA-EE-A29E-06 17 38028531 38028531 G A ZPBP2 Missense_Mutation p.E139K 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 17 38133080 38133080 G A GSDMA Silent p.T369T 0.75 TCGA-EE-A29E-06 17 38142926 38142926 C T PSMD3 Silent p.L170L 0.82 TCGA-EE-A29E-06 17 38641186 38641186 G A TNS4 Silent p.I454I 0.77 TCGA-EE-A29E-06 17 38645133 38645133 G A TNS4 Silent p.F176F 0.80 TCGA-EE-A29E-06 17 38911513 38911513 C T KRT25 Missense_Mutation p.R4Q 0.83 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A29E-06 17 39017860 39017860 T C KRT12 3'UTR 0.92 TCGA-EE-A29E-06 17 39036418 39036418 C T KRT20 Missense_Mutation p.M242I 0.75 tolerated(0.06) possibly_damaging(0.755) TCGA-EE-A29E-06 17 39122948 39122948 G A KRT39 Missense_Mutation p.P54L 0.85 tolerated(0.66) benign(0.001) TCGA-EE-A29E-06 17 39389024 39389024 G A KRTAP9-3 Missense_Mutation p.G91S 0.80 tolerated(0.25) unknown(0) TCGA-EE-A29E-06 17 39596766 39596766 G A KRT38 Silent p.L136L 0.84 TCGA-EE-A29E-06 17 39727617 39727617 C T KRT9 Missense_Mutation p.D210N 0.70 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A29E-06 17 39883651 39883651 C T HAP1 Intron 0.85 TCGA-EE-A29E-06 17 40811958 40811958 C T TUBG2 Silent p.F52F 0.95 TCGA-EE-A29E-06 17 41002343 41002343 C T AOC2 Missense_Mutation p.P750L 0.71 tolerated(0.06) benign(0.027) TCGA-EE-A29E-06 17 42232019 42232019 C T C17orf53 Silent p.F516F 0.79 TCGA-EE-A29E-06 17 42457071 42457071 G A ITGA2B Missense_Mutation p.H622Y 0.82 tolerated(0.87) possibly_damaging(0.886) TCGA-EE-A29E-06 17 42458345 42458345 G A ITGA2B Missense_Mutation p.S432L 0.91 deleterious(0.02) benign(0.133) TCGA-EE-A29E-06 17 42828063 42828063 C T DBF4B Silent p.L430L 0.85 TCGA-EE-A29E-06 17 42828064 42828064 C T DBF4B Silent p.L431L 0.85 TCGA-EE-A29E-06 17 4461464 4461464 G A GGT6 Missense_Mutation p.P443L 0.74 tolerated(0.14) benign(0.011) TCGA-EE-A29E-06 17 45367084 45367084 C T ITGB3 Missense_Mutation p.S326F 0.86 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A29E-06 17 45367595 45367595 C T ITGB3 Silent p.S360S 0.75 TCGA-EE-A29E-06 17 4541961 4541961 G A ALOX15 Silent p.I187I 0.84 TCGA-EE-A29E-06 17 45456553 45456553 G A EFCAB13 Missense_Mutation p.G506R 0.71 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29E-06 17 45822198 45822198 C T TBX21 Silent p.L358L 0.82 TCGA-EE-A29E-06 17 45822634 45822634 C T TBX21 Missense_Mutation p.P504S 0.86 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 17 45822635 45822635 C T TBX21 Missense_Mutation p.P504L 0.86 tolerated(0.11) probably_damaging(0.997) TCGA-EE-A29E-06 17 45904462 45904462 G A MRPL10 Missense_Mutation p.L121F 0.86 tolerated(0.3) benign(0.071) TCGA-EE-A29E-06 17 46799854 46799854 T C PRAC1 5'UTR 0.60 TCGA-EE-A29E-06 17 47246996 47246996 A G B4GALNT2 Missense_Mutation p.K536R 0.07 tolerated(0.07) benign(0.006) TCGA-EE-A29E-06 17 47284111 47284111 C T GNGT2 3'UTR 0.09 TCGA-EE-A29E-06 17 47677552 47677552 C T SPOP 3'UTR 0.19 TCGA-EE-A29E-06 17 47696593 47696593 T G SPOP Intron 0.16 TCGA-EE-A29E-06 17 47900603 47900603 C T KAT7 Missense_Mutation p.L476F 0.92 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 17 48072064 48072064 T C DLX3 Missense_Mutation p.E100G 0.90 tolerated(0.15) benign(0.131) TCGA-EE-A29E-06 17 48072065 48072065 C A DLX3 Nonsense_Mutation p.E100* 0.88 TCGA-EE-A29E-06 17 48151603 48151603 C T ITGA3 Silent p.D447D 0.24 TCGA-EE-A29E-06 17 48153727 48153727 C T ITGA3 Missense_Mutation p.S571F 0.23 tolerated(0.13) benign(0.029) TCGA-EE-A29E-06 17 48272987 48272987 G A COL1A1 Missense_Mutation p.P366S 0.91 unknown(0) TCGA-EE-A29E-06 17 48599400 48599400 G A MYCBPAP Silent p.G448G 0.90 TCGA-EE-A29E-06 17 4862935 4862935 G A SPAG7 Missense_Mutation p.P193L 0.85 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 17 48633028 48633028 C T SPATA20 3'UTR 0.52 TCGA-EE-A29E-06 17 48677158 48677158 C T CACNA1G Missense_Mutation p.R1210W 0.42 tolerated(0.08) benign(0.339) TCGA-EE-A29E-06 17 4875709 4875709 T C CAMTA2 Missense_Mutation p.M899V 0.83 tolerated(0.37) benign(0.001) TCGA-EE-A29E-06 17 4926946 4926946 C T KIF1C Missense_Mutation p.R938C 0.91 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-EE-A29E-06 17 51900681 51900681 C T KIF2B Missense_Mutation p.S96F 0.87 tolerated(0.05) benign(0.126) TCGA-EE-A29E-06 17 5424903 5424903 G A NLRP1 Missense_Mutation p.H1242Y 0.78 tolerated(0.13) benign(0.101) TCGA-EE-A29E-06 17 5461949 5461949 G A NLRP1 Silent p.I689I 0.84 TCGA-EE-A29E-06 17 56276520 56276520 C T EPX Silent p.L414L 0.75 TCGA-EE-A29E-06 17 57043207 57043207 G T PPM1E Missense_Mutation p.D246Y 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 17 59067396 59067396 C T BCAS3 Missense_Mutation p.S429F 0.84 deleterious(0) benign(0.352) TCGA-EE-A29E-06 17 60061676 60061676 G A MED13 Missense_Mutation p.S915F 0.86 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29E-06 17 6023659 6023659 C T WSCD1 Missense_Mutation p.S469L 0.79 deleterious(0) possibly_damaging(0.733) TCGA-EE-A29E-06 17 60345056 60345056 C T TBC1D3P2 Intron 0.94 TCGA-EE-A29E-06 17 60814521 60814521 G A MARCH10 Silent p.S236S 0.80 TCGA-EE-A29E-06 17 61566318 61566318 G A ACE Silent p.G822G 0.84 TCGA-EE-A29E-06 17 61613282 61613282 G A KCNH6 Missense_Mutation p.D452N 0.80 tolerated(0.27) benign(0.07) TCGA-EE-A29E-06 17 62081042 62081042 A T ICAM2 Missense_Mutation p.F204Y 0.79 tolerated(0.06) benign(0.006) TCGA-EE-A29E-06 17 63221186 63221186 C T RGS9 Missense_Mutation p.P492S 0.85 tolerated_low_confidence(0.19) benign(0.231) TCGA-EE-A29E-06 17 64875095 64875095 G A CACNG5 Missense_Mutation p.E68K 0.80 tolerated(0.66) benign(0.072) TCGA-EE-A29E-06 17 66522027 66522027 C T PRKAR1A Nonsense_Mutation p.R228* 0.83 TCGA-EE-A29E-06 17 6683126 6683126 C T FBXO39 5'UTR 0.87 TCGA-EE-A29E-06 17 66878783 66878783 C T ABCA8 Missense_Mutation p.R1222K 0.88 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29E-06 17 67017883 67017883 C T ABCA9 Missense_Mutation p.D801N 0.84 deleterious(0.01) possibly_damaging(0.694) TCGA-EE-A29E-06 17 6704101 6704101 C T TEKT1 Missense_Mutation p.M338I 0.81 tolerated(1) benign(0.001) TCGA-EE-A29E-06 17 67129814 67129814 C T ABCA6 Missense_Mutation p.M253I 0.70 deleterious(0) benign(0.344) TCGA-EE-A29E-06 17 67132256 67132256 G A ABCA6 Missense_Mutation p.P146L 0.84 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 17 67210953 67210953 G A ABCA10 Missense_Mutation p.P300S 0.82 tolerated(0.48) benign(0.264) TCGA-EE-A29E-06 17 6930093 6930093 G A BCL6B Missense_Mutation p.S375N 0.85 deleterious(0.02) benign(0.381) TCGA-EE-A29E-06 17 71410810 71410810 G A SDK2 Silent p.F819F 0.85 TCGA-EE-A29E-06 17 7193773 7193773 G A YBX2 Missense_Mutation p.R181C 0.83 deleterious(0) possibly_damaging(0.689) TCGA-EE-A29E-06 17 72256439 72256439 A T TTYH2 3'UTR 0.76 TCGA-EE-A29E-06 17 7227207 7227207 G A NEURL4 Silent p.I729I 0.81 TCGA-EE-A29E-06 17 72278044 72278044 G A DNAI2 Missense_Mutation p.D30N 0.86 tolerated(0.07) benign(0.012) TCGA-EE-A29E-06 17 72436741 72436741 G A GPRC5C Missense_Mutation p.D321N 0.81 tolerated(0.07) probably_damaging(1) TCGA-EE-A29E-06 17 72537607 72537607 G A CD300C 3'UTR 0.67 TCGA-EE-A29E-06 17 72691207 72691207 G A CD300LF 3'UTR 0.80 TCGA-EE-A29E-06 17 72848613 72848613 C T GRIN2C Silent p.L179L 0.73 TCGA-EE-A29E-06 17 72927037 72927037 G A OTOP2 Missense_Mutation p.S436N 0.68 tolerated(0.5) benign(0.049) TCGA-EE-A29E-06 17 72945453 72945453 G A OTOP3 Missense_Mutation p.G578E 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 17 73317851 73317851 G A GRB2 Silent p.F119F 0.80 TCGA-EE-A29E-06 17 7366631 7366631 G A ZBTB4 Missense_Mutation p.A557V 0.78 benign(0.017) TCGA-EE-A29E-06 17 73872106 73872106 G A TRIM47 Silent p.F359F 0.77 TCGA-EE-A29E-06 17 74003456 74003456 G A EVPL Missense_Mutation p.L1944F 0.81 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 17 74006213 74006213 C T EVPL Missense_Mutation p.D1025N 0.74 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29E-06 17 74006214 74006214 C T EVPL Silent p.R1024R 0.75 TCGA-EE-A29E-06 17 7405399 7405399 C T POLR2A Missense_Mutation p.R844C 0.87 probably_damaging(1) TCGA-EE-A29E-06 17 74075563 74075563 G A ZACN Silent p.Q47Q 0.88 TCGA-EE-A29E-06 17 7416841 7416841 C T POLR2A Missense_Mutation p.P1753L 0.82 unknown(0) TCGA-EE-A29E-06 17 75471587 75471587 C T SEPT9 Intron 0.75 TCGA-EE-A29E-06 17 7576857 7576857 A C TP53 Missense_Mutation p.L330R 0.67 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 17 76087609 76087609 C A TNRC6C Silent p.L1294L 0.90 TCGA-EE-A29E-06 17 76354956 76354956 G A SOCS3 Missense_Mutation p.S74L 0.71 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 17 76503584 76503584 G A DNAH17 Missense_Mutation p.P1510S 0.87 probably_damaging(0.977) TCGA-EE-A29E-06 17 76567698 76567698 G A DNAH17 Silent p.L236L 0.76 TCGA-EE-A29E-06 17 7689617 7689617 C T DNAH2 Missense_Mutation p.S2102F 0.78 possibly_damaging(0.629) TCGA-EE-A29E-06 17 7689896 7689896 T C DNAH2 Silent p.P2119P 0.83 TCGA-EE-A29E-06 17 77079621 77079621 C T ENGASE Silent p.F400F 0.79 TCGA-EE-A29E-06 17 78796094 78796094 C T RPTOR Silent p.L328L 0.85 TCGA-EE-A29E-06 17 79204267 79204267 G A ENTHD2 Intron 0.89 TCGA-EE-A29E-06 17 79866942 79866942 G A PCYT2 Intron 0.54 TCGA-EE-A29E-06 17 7990776 7990776 G A ALOX12B 5'UTR 0.87 TCGA-EE-A29E-06 17 79982614 79982614 C T LRRC45 Missense_Mutation p.L110F 0.86 tolerated(0.06) possibly_damaging(0.685) TCGA-EE-A29E-06 17 9631820 9631820 G A USP43 Missense_Mutation p.G962E 0.83 tolerated(0.09) benign(0.356) TCGA-EE-A29E-06 17 9760827 9760827 C T GLP2R Silent p.V233V 0.77 TCGA-EE-A29E-06 18 117127 117127 C T ROCK1P1 RNA 0.45 TCGA-EE-A29E-06 18 118392 118392 C T ROCK1P1 RNA 0.26 TCGA-EE-A29E-06 18 12254390 12254390 C T CIDEA Missense_Mutation p.A3V 0.77 tolerated(0.51) benign(0.001) TCGA-EE-A29E-06 18 13826711 13826711 G A MC5R Missense_Mutation p.R316K 0.31 tolerated(0.25) benign(0.001) TCGA-EE-A29E-06 18 13885422 13885422 G A MC2R Silent p.F32F 0.48 TCGA-EE-A29E-06 18 14479219 14479219 G A CXADRP3 RNA 0.27 TCGA-EE-A29E-06 18 14542690 14542690 G A POTEC Silent p.V152V 0.31 TCGA-EE-A29E-06 18 14542981 14542981 C T POTEC Silent p.K55K 0.50 TCGA-EE-A29E-06 18 14764014 14764014 G A ANKRD30B Missense_Mutation p.E384K 0.80 tolerated_low_confidence(0.42) benign(0.011) TCGA-EE-A29E-06 18 20570913 20570913 C T RBBP8 Missense_Mutation p.P274L 0.38 tolerated(0.25) benign(0.005) TCGA-EE-A29E-06 18 20570914 20570914 C T RBBP8 Silent p.P274P 0.35 TCGA-EE-A29E-06 18 21390430 21390430 G A LAMA3 Silent p.R568R 0.41 TCGA-EE-A29E-06 18 21390462 21390462 G A LAMA3 Missense_Mutation p.C579Y 0.34 possibly_damaging(0.558) TCGA-EE-A29E-06 18 21399891 21399891 G A LAMA3 Missense_Mutation p.R745Q 0.42 probably_damaging(0.998) TCGA-EE-A29E-06 18 24039767 24039767 G A KCTD1 Silent p.V144V 0.38 TCGA-EE-A29E-06 18 25568577 25568577 C T CDH2 Missense_Mutation p.G551E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 18 25570082 25570082 C T CDH2 Missense_Mutation p.R526Q 0.38 tolerated(0.06) benign(0.087) TCGA-EE-A29E-06 18 28649050 28649050 C T DSC2 Missense_Mutation p.G773E 0.33 deleterious(0) probably_damaging(0.963) TCGA-EE-A29E-06 18 28725645 28725645 G A DSC1 Missense_Mutation p.H290Y 0.42 tolerated(0.42) possibly_damaging(0.663) TCGA-EE-A29E-06 18 28923418 28923418 C T DSG1 Missense_Mutation p.P565S 0.30 deleterious(0) probably_damaging(0.962) TCGA-EE-A29E-06 18 28923419 28923419 C T DSG1 Missense_Mutation p.P565L 0.30 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A29E-06 18 28934291 28934291 G A DSG1 Missense_Mutation p.G711E 0.36 deleterious(0.04) probably_damaging(0.955) TCGA-EE-A29E-06 18 29044075 29044075 C T DSG3 Missense_Mutation p.A334V 0.31 tolerated(0.44) benign(0.065) TCGA-EE-A29E-06 18 29052340 29052340 G A DSG3 Missense_Mutation p.G664E 0.35 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 18 29054340 29054340 G A DSG3 Missense_Mutation p.M786I 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A29E-06 18 29237967 29237967 G A B4GALT6 Silent p.L106L 0.36 TCGA-EE-A29E-06 18 29493372 29493372 G A TRAPPC8 Missense_Mutation p.P244L 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 18 29795197 29795197 G A MEP1B Missense_Mutation p.D578N 0.44 tolerated(0.11) benign(0.097) TCGA-EE-A29E-06 18 30091976 30091976 G A WBP11P1 RNA 0.39 TCGA-EE-A29E-06 18 30093726 30093726 C T WBP11P1 RNA 0.47 TCGA-EE-A29E-06 18 31263382 31263382 G A ASXL3 Nonsense_Mutation p.W243* 0.27 TCGA-EE-A29E-06 18 31318971 31318971 G A ASXL3 Missense_Mutation p.D535N 0.44 benign(0.111) TCGA-EE-A29E-06 18 31323386 31323386 C T ASXL3 Missense_Mutation p.P1192S 0.38 benign(0.043) TCGA-EE-A29E-06 18 31323770 31323770 G A ASXL3 Missense_Mutation p.D1320N 0.43 benign(0.388) TCGA-EE-A29E-06 18 3134759 3134759 G A MYOM1 Missense_Mutation p.S758L 0.24 deleterious(0) possibly_damaging(0.531) TCGA-EE-A29E-06 18 3134818 3134818 G A MYOM1 Silent p.I738I 0.23 TCGA-EE-A29E-06 18 31538379 31538379 G A NOL4 Missense_Mutation p.P354S 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 18 32391971 32391971 G A DTNA Missense_Mutation p.R166Q 0.33 tolerated(0.22) benign(0.004) TCGA-EE-A29E-06 18 333031 333031 A T COLEC12 Silent p.V643V 0.49 TCGA-EE-A29E-06 18 3534363 3534363 C T DLGAP1 Missense_Mutation p.D770N 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 18 40850610 40850610 G A SYT4 Missense_Mutation p.P325L 0.48 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 18 40854122 40854122 G A SYT4 Missense_Mutation p.S91L 0.38 tolerated(0.14) benign(0.002) TCGA-EE-A29E-06 18 43316525 43316525 G A SLC14A1 Missense_Mutation p.G248E 0.39 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 18 43497687 43497687 G A EPG5 Missense_Mutation p.P1066S 0.41 deleterious(0) probably_damaging(0.986) TCGA-EE-A29E-06 18 44015303 44015303 C T RNF165 Silent p.F143F 0.33 TCGA-EE-A29E-06 18 44336500 44336500 G A ST8SIA5 5'UTR 0.39 TCGA-EE-A29E-06 18 44555104 44555104 C T TCEB3C Nonsense_Mutation p.W370* 0.05 TCGA-EE-A29E-06 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.06 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A29E-06 18 44559889 44559889 C T TCEB3B Missense_Mutation p.E583K 0.40 deleterious(0.05) benign(0.404) TCGA-EE-A29E-06 18 45567248 45567248 G A ZBTB7C Silent p.I77I 0.41 TCGA-EE-A29E-06 18 46385731 46385731 G A CTIF Missense_Mutation p.R535Q 0.43 deleterious(0.02) possibly_damaging(0.596) TCGA-EE-A29E-06 18 46385732 46385732 G A CTIF Silent p.R535R 0.44 TCGA-EE-A29E-06 18 47390738 47390738 C T MYO5B Missense_Mutation p.E1206K 0.45 deleterious(0) possibly_damaging(0.698) TCGA-EE-A29E-06 18 47438483 47438483 G A MYO5B Silent p.A717A 0.48 TCGA-EE-A29E-06 18 47488716 47488716 C T MYO5B Missense_Mutation p.D489N 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A29E-06 18 48252394 48252394 G A MAPK4 Missense_Mutation p.G306R 0.44 deleterious(0) possibly_damaging(0.864) TCGA-EE-A29E-06 18 50976943 50976943 C T DCC Silent p.I1101I 0.24 TCGA-EE-A29E-06 18 50985705 50985705 G A DCC Missense_Mutation p.E1166K 0.34 deleterious(0.01) benign(0.155) TCGA-EE-A29E-06 18 51053061 51053061 C T DCC Missense_Mutation p.P1396S 0.27 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A29E-06 18 51898902 51898902 C A C18orf54 Missense_Mutation p.L304I 0.34 deleterious(0) possibly_damaging(0.567) TCGA-EE-A29E-06 18 52265100 52265100 C T DYNAP Silent p.L119L 0.39 TCGA-EE-A29E-06 18 52265165 52265165 C T DYNAP Missense_Mutation p.S141L 0.29 deleterious(0) benign(0.279) TCGA-EE-A29E-06 18 52265242 52265242 C T DYNAP Missense_Mutation p.P167S 0.38 tolerated(0.49) unknown(0) TCGA-EE-A29E-06 18 52921913 52921913 G A TCF4 Missense_Mutation p.R491C 0.73 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29E-06 18 55020219 55020219 G A ST8SIA3 Missense_Mutation p.G48R 0.30 benign(0.014) TCGA-EE-A29E-06 18 56202134 56202134 T G ALPK2 Missense_Mutation p.E1762A 0.44 deleterious(0) possibly_damaging(0.871) TCGA-EE-A29E-06 18 56202135 56202135 C T ALPK2 Missense_Mutation p.E1762K 0.46 deleterious(0.02) benign(0.397) TCGA-EE-A29E-06 18 5891962 5891962 C T TMEM200C Missense_Mutation p.R34K 0.27 tolerated(1) probably_damaging(0.92) TCGA-EE-A29E-06 18 59221488 59221488 G A CDH20 Missense_Mutation p.E656K 0.38 deleterious(0.01) benign(0.246) TCGA-EE-A29E-06 18 59483292 59483292 G A RNF152 Silent p.I135I 0.39 TCGA-EE-A29E-06 18 5956288 5956288 G A L3MBTL4 Silent p.I601I 0.56 TCGA-EE-A29E-06 18 59774098 59774098 T A PIGN Missense_Mutation p.Y564F 0.22 tolerated(0.06) possibly_damaging(0.6) TCGA-EE-A29E-06 18 61156652 61156652 G A SERPINB5 Missense_Mutation p.E127K 0.39 tolerated(0.1) possibly_damaging(0.536) TCGA-EE-A29E-06 18 61160362 61160362 C T SERPINB5 Intron 0.38 TCGA-EE-A29E-06 18 61304963 61304963 G A SERPINB4 Missense_Mutation p.S388L 0.35 deleterious(0.02) possibly_damaging(0.489) TCGA-EE-A29E-06 18 61324175 61324175 G A SERPINB3 Missense_Mutation p.H220Y 0.39 deleterious(0) benign(0.034) TCGA-EE-A29E-06 18 61449677 61449677 G A SERPINB7 Missense_Mutation p.G24E 0.33 tolerated(1) benign(0.444) TCGA-EE-A29E-06 18 61471555 61471555 C T SERPINB7 Missense_Mutation p.P277S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 18 61471556 61471556 C T SERPINB7 Missense_Mutation p.P277L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 18 66541936 66541936 G A CCDC102B Missense_Mutation p.E323K 0.29 tolerated(0.05) benign(0.323) TCGA-EE-A29E-06 18 67992221 67992221 C T SOCS6 Missense_Mutation p.S106F 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.83) TCGA-EE-A29E-06 18 7011389 7011389 G A LAMA1 Silent p.P1199P 0.33 TCGA-EE-A29E-06 18 7014025 7014025 G A LAMA1 Missense_Mutation p.S1051L 0.24 deleterious(0) probably_damaging(0.937) TCGA-EE-A29E-06 18 74091181 74091181 G A ZNF516 Silent p.A963A 0.43 TCGA-EE-A29E-06 18 743027 743027 G A YES1 Silent p.F317F 0.50 TCGA-EE-A29E-06 18 74639409 74639409 C A ZNF236 Silent p.T1448T 0.50 TCGA-EE-A29E-06 18 74980603 74980603 C T GALR1 Silent p.I265I 0.39 TCGA-EE-A29E-06 18 77171144 77171144 C T NFATC1 Missense_Mutation p.S277F 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 18 77208917 77208917 G A NFATC1 Missense_Mutation p.E495K 0.41 deleterious(0) possibly_damaging(0.9) TCGA-EE-A29E-06 18 77246884 77246884 C T NFATC1 Missense_Mutation p.P897L 0.27 tolerated(0.12) possibly_damaging(0.883) TCGA-EE-A29E-06 18 77474635 77474635 C T CTDP1 Missense_Mutation p.P392L 0.47 tolerated(0.24) benign(0) TCGA-EE-A29E-06 18 9182383 9182383 C T ANKRD12 5'UTR 0.24 TCGA-EE-A29E-06 18 9887373 9887373 C T TXNDC2 Silent p.L299L 0.27 TCGA-EE-A29E-06 18 9887524 9887524 G T TXNDC2 Nonsense_Mutation p.E350* 0.70 TCGA-EE-A29E-06 19 1005327 1005327 C T GRIN3B Silent p.N609N 0.44 TCGA-EE-A29E-06 19 10080329 10080329 C G COL5A3 Silent p.G1340G 0.42 TCGA-EE-A29E-06 19 10080330 10080330 C T COL5A3 Missense_Mutation p.G1340E 0.38 unknown(0) TCGA-EE-A29E-06 19 10108691 10108691 A T COL5A3 Missense_Mutation p.F390Y 0.32 unknown(0) TCGA-EE-A29E-06 19 1014470 1014470 G A TMEM259 Silent p.A76A 0.33 TCGA-EE-A29E-06 19 10220353 10220353 C T PPAN Missense_Mutation p.P187L 0.34 deleterious(0) possibly_damaging(0.869) TCGA-EE-A29E-06 19 10247957 10247957 C T DNMT1 Splice_Site p.X1432_splice 0.19 TCGA-EE-A29E-06 19 10418887 10418887 G A ZGLP1 Silent p.S157S 0.53 TCGA-EE-A29E-06 19 10418888 10418888 G A ZGLP1 Missense_Mutation p.S157F 0.55 deleterious(0) possibly_damaging(0.472) TCGA-EE-A29E-06 19 1068553 1068553 C T HMHA1 Silent p.F93F 0.29 TCGA-EE-A29E-06 19 11152064 11152064 G A SMARCA4 Missense_Mutation p.D1418N 0.50 probably_damaging(0.932) TCGA-EE-A29E-06 19 11303680 11303680 G A KANK2 Missense_Mutation p.P359L 0.50 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A29E-06 19 11422832 11422832 C T TSPAN16 Silent p.L207L 0.36 TCGA-EE-A29E-06 19 11565410 11565410 C T ELAVL3 Silent p.L345L 0.33 TCGA-EE-A29E-06 19 12089716 12089716 C T ZNF763 Missense_Mutation p.S329F 0.36 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A29E-06 19 12221183 12221183 C T ZNF788 Missense_Mutation p.P43S 0.38 tolerated(0.17) benign(0.016) TCGA-EE-A29E-06 19 12769289 12769289 G A MAN2B1 Silent p.S354S 0.26 TCGA-EE-A29E-06 19 12826066 12826066 G A TNPO2 Silent p.T213T 0.58 TCGA-EE-A29E-06 19 12826134 12826134 G A TNPO2 Missense_Mutation p.H191Y 0.52 tolerated(0.19) benign(0.01) TCGA-EE-A29E-06 19 12976547 12976547 C T MAST1 Silent p.P607P 0.28 TCGA-EE-A29E-06 19 13002951 13002951 C T GCDH Missense_Mutation p.S98L 0.36 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A29E-06 19 13246834 13246834 C T NACC1 Silent p.T271T 0.32 TCGA-EE-A29E-06 19 13323213 13323213 G A CACNA1A Silent p.S2058S 0.43 TCGA-EE-A29E-06 19 13446682 13446682 G A CACNA1A Silent p.F340F 0.36 TCGA-EE-A29E-06 19 13988435 13988435 C T NANOS3 Nonsense_Mutation p.R125* 0.35 TCGA-EE-A29E-06 19 13996861 13996861 G A C19orf57 Missense_Mutation p.P559L 0.42 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 19 14038819 14038819 C T CC2D1A Silent p.D810D 0.32 TCGA-EE-A29E-06 19 14141608 14141608 C T RLN3 Silent p.L93L 0.34 TCGA-EE-A29E-06 19 1430315 1430315 C T DAZAP1 Silent p.P275P 0.39 TCGA-EE-A29E-06 19 1434829 1434829 C T DAZAP1 Missense_Mutation p.S381L 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-EE-A29E-06 19 14523405 14523405 G A DDX39A Silent p.F98F 0.40 TCGA-EE-A29E-06 19 1465875 1465875 G A APC2 Missense_Mutation p.E859K 0.40 possibly_damaging(0.764) TCGA-EE-A29E-06 19 14774249 14774249 G A EMR3 Silent p.F60F 0.40 TCGA-EE-A29E-06 19 14991497 14991497 G A OR7A17 Missense_Mutation p.S224F 0.50 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-EE-A29E-06 19 15063782 15063782 G A SLC1A6 Missense_Mutation p.P486L 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 19 15276182 15276182 G A NOTCH3 Missense_Mutation p.L1938F 0.40 tolerated(0.77) possibly_damaging(0.704) TCGA-EE-A29E-06 19 15290071 15290071 C T NOTCH3 Silent p.E1161E 0.29 TCGA-EE-A29E-06 19 15375451 15375451 G A BRD4 Missense_Mutation p.R326W 0.37 possibly_damaging(0.689) TCGA-EE-A29E-06 19 15483978 15483978 G A AKAP8 Missense_Mutation p.S182F 0.52 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A29E-06 19 15586370 15586370 C T PGLYRP2 Missense_Mutation p.E371K 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 19 15760810 15760810 C T CYP4F3 Silent p.F245F 0.40 TCGA-EE-A29E-06 19 16278981 16278981 C T CIB3 Missense_Mutation p.D105N 0.47 tolerated(0.07) probably_damaging(0.913) TCGA-EE-A29E-06 19 17088253 17088253 G C CPAMD8 Silent p.V608V 0.40 TCGA-EE-A29E-06 19 17265205 17265205 C T MYO9B Silent p.F393F 0.42 TCGA-EE-A29E-06 19 17373797 17373797 G A USHBP1 Missense_Mutation p.T69I 0.49 tolerated(0.11) benign(0.03) TCGA-EE-A29E-06 19 17387376 17387376 C T BABAM1 Silent p.I214I 0.40 TCGA-EE-A29E-06 19 17389768 17389768 C T BABAM1 Missense_Mutation p.H301Y 0.31 deleterious(0) probably_damaging(0.947) TCGA-EE-A29E-06 19 17397298 17397298 C T ANKLE1 Silent p.L595L 0.35 TCGA-EE-A29E-06 19 17654183 17654183 G A FAM129C Missense_Mutation p.A494T 0.33 tolerated(0.18) benign(0.133) TCGA-EE-A29E-06 19 17756525 17756525 C T UNC13A Missense_Mutation p.V772M 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 19 1785223 1785223 A T ATP8B3 Missense_Mutation p.I1156N 0.55 tolerated(0.26) possibly_damaging(0.707) TCGA-EE-A29E-06 19 18254689 18254689 C T MAST3 Missense_Mutation p.A790V 0.32 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-EE-A29E-06 19 18652665 18652665 T A FKBP8 Missense_Mutation p.E39V 0.36 deleterious_low_confidence(0) benign(0.14) TCGA-EE-A29E-06 19 18779140 18779140 C T KLHL26 Silent p.L311L 0.39 TCGA-EE-A29E-06 19 18895057 18895057 C T COMP Silent p.K677K 0.30 TCGA-EE-A29E-06 19 18976399 18976399 C T UPF1 Missense_Mutation p.R1017C 0.40 tolerated(0.05) possibly_damaging(0.62) TCGA-EE-A29E-06 19 19135628 19135628 G A SUGP2 Missense_Mutation p.S510L 0.29 deleterious(0.03) benign(0.23) TCGA-EE-A29E-06 19 19653703 19653703 C T CILP2 Missense_Mutation p.S300F 0.40 deleterious(0.02) benign(0.056) TCGA-EE-A29E-06 19 19654194 19654194 C T CILP2 Missense_Mutation p.T372I 0.41 tolerated(0.3) benign(0.004) TCGA-EE-A29E-06 19 19655943 19655943 C T CILP2 Silent p.L863L 0.36 TCGA-EE-A29E-06 19 19989412 19989412 C T ZNF253 Silent p.F42F 0.50 TCGA-EE-A29E-06 19 20216029 20216029 G A ZNF90 Splice_Site p.X44_splice 0.22 TCGA-EE-A29E-06 19 20308543 20308543 A C ZNF486 Missense_Mutation p.K342Q 0.36 tolerated(0.14) benign(0.305) TCGA-EE-A29E-06 19 21240107 21240107 C T ZNF430 Silent p.H331H 0.39 TCGA-EE-A29E-06 19 2213718 2213718 C T DOT1L Intron 0.44 TCGA-EE-A29E-06 19 22154225 22154225 T A ZNF208 Missense_Mutation p.K1204I 0.39 deleterious(0) possibly_damaging(0.481) TCGA-EE-A29E-06 19 22157451 22157451 C T ZNF208 Missense_Mutation p.G129S 0.39 tolerated(0.59) benign(0.353) TCGA-EE-A29E-06 19 22170085 22170085 G A ZNF208 Silent p.I53I 0.36 TCGA-EE-A29E-06 19 22379442 22379442 C T ZNF676 5'UTR 0.36 TCGA-EE-A29E-06 19 22585674 22585674 G A ZNF98 Missense_Mutation p.S57F 0.41 tolerated(0.14) probably_damaging(0.962) TCGA-EE-A29E-06 19 22939185 22939185 T G ZNF99 3'Flank 0.24 TCGA-EE-A29E-06 19 22941105 22941105 G A ZNF99 Missense_Mutation p.P536S 0.36 deleterious(0.02) possibly_damaging(0.785) TCGA-EE-A29E-06 19 23159597 23159597 G A ZNF728 Missense_Mutation p.S181L 0.35 tolerated(0.09) benign(0.009) TCGA-EE-A29E-06 19 23837429 23837429 T G ZNF675 Missense_Mutation p.R102S 0.46 deleterious(0.03) possibly_damaging(0.879) TCGA-EE-A29E-06 19 24310636 24310636 T A ZNF254 Missense_Mutation p.F612I 0.51 tolerated(0.27) benign(0) TCGA-EE-A29E-06 19 2717356 2717356 G A DIRAS1 Missense_Mutation p.S150L 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 19 2877898 2877898 C T ZNF556 Silent p.P314P 0.58 TCGA-EE-A29E-06 19 307127 307127 G A MIER2 Silent p.P536P 0.67 TCGA-EE-A29E-06 19 30934982 30934982 G A ZNF536 Silent p.G171G 0.42 TCGA-EE-A29E-06 19 30936197 30936197 G A ZNF536 Silent p.Q576Q 0.40 TCGA-EE-A29E-06 19 31039197 31039197 C T ZNF536 Missense_Mutation p.P891S 0.41 tolerated(0.4) benign(0.004) TCGA-EE-A29E-06 19 31040052 31040052 G A ZNF536 Missense_Mutation p.E1176K 0.50 deleterious_low_confidence(0.03) benign(0.146) TCGA-EE-A29E-06 19 311857 311857 G A MIER2 Silent p.I324I 0.31 TCGA-EE-A29E-06 19 3155824 3155824 C T GNA15 Silent p.I206I 0.29 TCGA-EE-A29E-06 19 34263248 34263248 C T CHST8 Silent p.F185F 0.48 TCGA-EE-A29E-06 19 34263987 34263987 G A CHST8 3'UTR 0.27 TCGA-EE-A29E-06 19 34833098 34833098 T G KIAA0355 Silent p.P753P 0.42 TCGA-EE-A29E-06 19 35249903 35249903 A G ZNF599 3'UTR 0.38 TCGA-EE-A29E-06 19 35786590 35786590 C T MAG Missense_Mutation p.P41S 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 19 35801493 35801493 C T MAG Silent p.V521V 0.44 TCGA-EE-A29E-06 19 35832744 35832744 C T CD22 Silent p.L637L 0.35 TCGA-EE-A29E-06 19 35832745 35832745 C T CD22 Missense_Mutation p.P638S 0.34 tolerated(0.11) benign(0.063) TCGA-EE-A29E-06 19 35842813 35842813 C T FFAR1 Missense_Mutation p.P120L 0.36 deleterious(0.03) benign(0.303) TCGA-EE-A29E-06 19 35850303 35850303 C T FFAR3 Silent p.L171L 0.43 TCGA-EE-A29E-06 19 3590104 3590104 C T GIPC3 Silent p.S285S 0.42 TCGA-EE-A29E-06 19 36018994 36018994 C T SBSN Missense_Mutation p.E64K 0.40 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 19 36046215 36046215 C T ATP4A Missense_Mutation p.G727R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 36214803 36214803 C T KMT2B Missense_Mutation p.R1077W 0.41 probably_damaging(0.973) TCGA-EE-A29E-06 19 36227621 36227621 C T KMT2B Missense_Mutation p.P2397L 0.39 benign(0.001) TCGA-EE-A29E-06 19 36268736 36268736 C T ARHGAP33 Missense_Mutation p.P39S 0.31 tolerated_low_confidence(0.35) possibly_damaging(0.803) TCGA-EE-A29E-06 19 36339218 36339218 C T NPHS1 Missense_Mutation p.E418K 0.55 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29E-06 19 36351534 36351534 G A KIRREL2 Missense_Mutation p.G298D 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 19 36509891 36509891 C T CLIP3 Silent p.V364V 0.44 TCGA-EE-A29E-06 19 36591688 36591688 C T WDR62 Silent p.S926S 0.39 TCGA-EE-A29E-06 19 36831947 36831947 A G ZFP14 Missense_Mutation p.C261R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 3730372 3730372 G A TJP3 Missense_Mutation p.R103K 0.44 tolerated(1) benign(0.005) TCGA-EE-A29E-06 19 373504 373504 G A THEG Silent p.F177F 0.38 TCGA-EE-A29E-06 19 3735567 3735567 G A TJP3 Silent p.E339E 0.43 TCGA-EE-A29E-06 19 3744028 3744028 C T TJP3 Silent p.I654I 0.41 TCGA-EE-A29E-06 19 37644247 37644247 G A ZNF585A Missense_Mutation p.P130L 0.41 deleterious(0.05) possibly_damaging(0.71) TCGA-EE-A29E-06 19 3778394 3778394 C T MATK Silent p.V438V 0.37 TCGA-EE-A29E-06 19 37879669 37879669 C T ZNF527 Missense_Mutation p.P240S 0.31 tolerated(0.19) benign(0.004) TCGA-EE-A29E-06 19 37904621 37904621 G A ZNF569 Silent p.L313L 0.41 TCGA-EE-A29E-06 19 38056933 38056933 G A ZNF571 Missense_Mutation p.P133S 0.50 tolerated(0.05) benign(0.002) TCGA-EE-A29E-06 19 3834946 3834946 C T ZFR2 Missense_Mutation p.G30E 0.29 tolerated(0.34) benign(0.067) TCGA-EE-A29E-06 19 38795938 38795938 G A YIF1B 3'UTR 0.31 TCGA-EE-A29E-06 19 38795939 38795939 G A YIF1B 3'UTR 0.31 TCGA-EE-A29E-06 19 38911593 38911593 C T RASGRP4 Missense_Mutation p.G111E 0.41 tolerated(0.85) benign(0.001) TCGA-EE-A29E-06 19 38991498 38991498 C T RYR1 Silent p.F2494F 0.39 TCGA-EE-A29E-06 19 39016076 39016076 C T RYR1 Silent p.I3520I 0.36 TCGA-EE-A29E-06 19 39025971 39025971 C T RYR1 Missense_Mutation p.L3819F 0.52 benign(0.011) TCGA-EE-A29E-06 19 39034006 39034006 G A RYR1 Silent p.R3903R 0.42 TCGA-EE-A29E-06 19 39039042 39039042 C T RYR1 Silent p.S4088S 0.35 TCGA-EE-A29E-06 19 3905569 3905569 G A ATCAY Missense_Mutation p.D92N 0.43 deleterious(0) probably_damaging(0.974) TCGA-EE-A29E-06 19 39062779 39062779 G A RYR1 Missense_Mutation p.D4623N 0.33 unknown(0) TCGA-EE-A29E-06 19 39063864 39063864 G A RYR1 Silent p.L4682L 0.50 TCGA-EE-A29E-06 19 39338030 39338030 G A HNRNPL Silent p.V104V 0.32 TCGA-EE-A29E-06 19 3964704 3964704 G A DAPK3 Silent p.A116A 0.23 TCGA-EE-A29E-06 19 3977513 3977513 G A EEF2 Silent p.I721I 0.28 TCGA-EE-A29E-06 19 3977564 3977564 G A EEF2 Silent p.V704V 0.38 TCGA-EE-A29E-06 19 39788685 39788685 G A IFNL1 Missense_Mutation p.E111K 0.43 tolerated(0.19) benign(0.051) TCGA-EE-A29E-06 19 40363038 40363038 A G FCGBP Missense_Mutation p.F5011S 0.50 probably_damaging(0.998) TCGA-EE-A29E-06 19 40480235 40480235 C T PSMC4 Silent p.I119I 0.25 TCGA-EE-A29E-06 19 40978578 40978578 C T SPTBN4 Missense_Mutation p.P17L 0.41 tolerated(0.67) benign(0) TCGA-EE-A29E-06 19 41355868 41355868 G A CYP2A6 Silent p.G66G 0.48 TCGA-EE-A29E-06 19 41454995 41454995 G A AC092071.1 3'Flank 0.39 TCGA-EE-A29E-06 19 4171147 4171147 C T CREB3L3 Missense_Mutation p.S317L 0.40 deleterious(0.05) possibly_damaging(0.528) TCGA-EE-A29E-06 19 42190993 42190993 G A CEACAM7 Missense_Mutation p.A75V 0.34 tolerated(0.43) possibly_damaging(0.526) TCGA-EE-A29E-06 19 4224189 4224189 G A ANKRD24 Silent p.Q1121Q 0.33 TCGA-EE-A29E-06 19 42342257 42342257 G A LYPD4 Missense_Mutation p.S97F 0.37 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A29E-06 19 42352855 42352855 C T DMRTC2 Intron 0.35 TCGA-EE-A29E-06 19 42352856 42352856 C T DMRTC2 Intron 0.35 TCGA-EE-A29E-06 19 42479820 42479820 C T ATP1A3 Missense_Mutation p.D755N 0.39 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A29E-06 19 42583793 42583793 C T ZNF574 Silent p.F345F 0.40 TCGA-EE-A29E-06 19 4283085 4283085 C T SHD Silent p.T146T 0.34 TCGA-EE-A29E-06 19 4292607 4292607 C T TMIGD2 Missense_Mutation p.G280R 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A29E-06 19 43243228 43243228 G A PSG3 Silent p.N26N 0.59 TCGA-EE-A29E-06 19 43244533 43244533 C T PSG3 Missense_Mutation p.G2R 0.32 deleterious(0.04) benign(0.162) TCGA-EE-A29E-06 19 43257479 43257479 G A PSG8 3'Flank 0.41 TCGA-EE-A29E-06 19 43262217 43262217 C T PSG8 Missense_Mutation p.E216K 0.40 deleterious(0.04) possibly_damaging(0.53) TCGA-EE-A29E-06 19 43269714 43269714 G A PSG8 Missense_Mutation p.P7L 0.43 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29E-06 19 43376027 43376027 T A PSG1 Missense_Mutation p.T201S 0.41 deleterious(0.03) benign(0.026) TCGA-EE-A29E-06 19 43376028 43376028 C T PSG1 Silent p.R200R 0.42 TCGA-EE-A29E-06 19 43382318 43382318 G A PSG1 Silent p.P59P 0.46 TCGA-EE-A29E-06 19 43382358 43382358 G A PSG1 Missense_Mutation p.S46F 0.42 deleterious(0.02) benign(0.005) TCGA-EE-A29E-06 19 43428850 43428850 G A PSG7 3'UTR 0.34 TCGA-EE-A29E-06 19 43428923 43428923 C T PSG7 3'UTR 0.25 TCGA-EE-A29E-06 19 43441252 43441252 C T PSG7 5'UTR 0.35 TCGA-EE-A29E-06 19 43523025 43523025 G A PSG11 Silent p.L202L 0.44 TCGA-EE-A29E-06 19 43576076 43576076 G A PSG2 Missense_Mutation p.S247L 0.35 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A29E-06 19 43579757 43579757 C T PSG2 Missense_Mutation p.S153N 0.47 deleterious(0.01) possibly_damaging(0.545) TCGA-EE-A29E-06 19 4361744 4361744 C T SH3GL1 Silent p.E320E 0.27 TCGA-EE-A29E-06 19 43683103 43683103 C T PSG5 Intron 0.38 TCGA-EE-A29E-06 19 43699171 43699171 C T PSG4 Missense_Mutation p.D322N 0.33 tolerated(0.63) benign(0) TCGA-EE-A29E-06 19 43922138 43922138 G A TEX101 Missense_Mutation p.G185E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 44131342 44131342 G A CADM4 Nonsense_Mutation p.Q114* 0.53 TCGA-EE-A29E-06 19 44514558 44514558 C T ZNF230 Missense_Mutation p.P123S 0.49 tolerated(0.24) benign(0.031) TCGA-EE-A29E-06 19 44792882 44792882 G A ZNF235 Missense_Mutation p.H236Y 0.45 tolerated(1) benign(0) TCGA-EE-A29E-06 19 44831582 44831582 G A ZNF112 3'UTR 0.34 TCGA-EE-A29E-06 19 45033510 45033510 C T CEACAM20 RNA 0.40 TCGA-EE-A29E-06 19 4511347 4511347 C T PLIN4 Silent p.V861V 0.25 TCGA-EE-A29E-06 19 45153139 45153139 C T PVR Silent p.P162P 0.44 TCGA-EE-A29E-06 19 45182157 45182157 C T CEACAM19 Missense_Mutation p.S203F 0.45 deleterious(0.03) possibly_damaging(0.462) TCGA-EE-A29E-06 19 45182158 45182158 C T CEACAM19 Silent p.S203S 0.44 TCGA-EE-A29E-06 19 45281354 45281354 C T CBLC Nonsense_Mutation p.R56* 0.50 TCGA-EE-A29E-06 19 45493792 45493792 C T CLPTM1 Silent p.F424F 0.41 TCGA-EE-A29E-06 19 45716535 45716535 C T EXOC3L2 Missense_Mutation p.R341Q 0.40 tolerated(0.1) possibly_damaging(0.816) TCGA-EE-A29E-06 19 45821172 45821172 C T CKM Missense_Mutation p.E87K 0.43 tolerated(0.06) benign(0.01) TCGA-EE-A29E-06 19 45976161 45976161 C T FOSB Missense_Mutation p.S303L 0.35 tolerated(0.09) possibly_damaging(0.706) TCGA-EE-A29E-06 19 46278228 46278228 G A DMPK Missense_Mutation p.S414F 0.38 deleterious(0) probably_damaging(0.939) TCGA-EE-A29E-06 19 46307853 46307853 G A RSPH6A Missense_Mutation p.P437L 0.32 deleterious(0.03) benign(0.111) TCGA-EE-A29E-06 19 46375805 46375805 C T FOXA3 Missense_Mutation p.S181F 0.33 deleterious(0) probably_damaging(0.948) TCGA-EE-A29E-06 19 46627529 46627529 A G IGFL3 Silent p.T25T 0.44 TCGA-EE-A29E-06 19 46832684 46832684 C T HIF3A Missense_Mutation p.P554L 0.46 deleterious_low_confidence(0) benign(0.357) TCGA-EE-A29E-06 19 47151937 47151937 G A DACT3 Silent p.S564S 0.40 TCGA-EE-A29E-06 19 47823763 47823763 G A C5AR1 Silent p.V243V 0.36 TCGA-EE-A29E-06 19 47823764 47823764 G A C5AR1 Missense_Mutation p.V244M 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 47844952 47844952 T A C5AR2 Missense_Mutation p.L299H 0.41 deleterious(0) probably_damaging(0.988) TCGA-EE-A29E-06 19 47845079 47845079 G A C5AR2 3'UTR 0.33 TCGA-EE-A29E-06 19 47885322 47885322 C T DHX34 Silent p.F1128F 0.43 TCGA-EE-A29E-06 19 47909615 47909615 G A MEIS3 Intron 0.57 TCGA-EE-A29E-06 19 48220223 48220223 G A EHD2 Silent p.P118P 0.31 TCGA-EE-A29E-06 19 48543927 48543927 C T CABP5 Missense_Mutation p.R58K 0.37 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A29E-06 19 49004630 49004630 C T LMTK3 Nonsense_Mutation p.W333* 0.37 TCGA-EE-A29E-06 19 49012212 49012212 C T LMTK3 Silent p.E180E 0.40 TCGA-EE-A29E-06 19 4902757 4902757 C T ARRDC5 Silent p.V41V 0.33 TCGA-EE-A29E-06 19 49206744 49206744 G A FUT2 Silent p.E177E 0.33 TCGA-EE-A29E-06 19 49362759 49362759 G A PLEKHA4 Missense_Mutation p.S220F 0.42 deleterious(0.04) benign(0.015) TCGA-EE-A29E-06 19 49376560 49376560 C T PPP1R15A Missense_Mutation p.P24S 0.50 deleterious(0) probably_damaging(0.968) TCGA-EE-A29E-06 19 49693490 49693490 G A TRPM4 Missense_Mutation p.G682E 0.37 deleterious(0) probably_damaging(0.95) TCGA-EE-A29E-06 19 49793702 49793702 G A SLC6A16 Intron 0.36 TCGA-EE-A29E-06 19 49982275 49982275 C T FLT3LG Missense_Mutation p.S151F 0.44 deleterious(0) probably_damaging(0.915) TCGA-EE-A29E-06 19 49982276 49982276 C T FLT3LG Silent p.S151S 0.44 TCGA-EE-A29E-06 19 50103156 50103156 C A PRR12 Missense_Mutation p.L1436I 0.30 possibly_damaging(0.567) TCGA-EE-A29E-06 19 50172182 50172182 C T BCL2L12 Missense_Mutation p.P193S 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 19 501732 501732 C T MADCAM1 Missense_Mutation p.T244I 0.40 deleterious(0.05) unknown(0) TCGA-EE-A29E-06 19 50187245 50187245 C T PRMT1 Silent p.I158I 0.33 TCGA-EE-A29E-06 19 50463542 50463542 G A SIGLEC11 Silent p.S199S 0.39 TCGA-EE-A29E-06 19 51021720 51021720 T G LRRC4B Missense_Mutation p.H417P 0.71 deleterious(0.02) benign(0.121) TCGA-EE-A29E-06 19 51135761 51135761 C T SYT3 Silent p.G152G 0.42 TCGA-EE-A29E-06 19 51192574 51192574 G A SHANK1 Intron 0.37 TCGA-EE-A29E-06 19 51274295 51274295 C T GPR32 Silent p.P146P 0.54 TCGA-EE-A29E-06 19 51506442 51506442 G A KLK9 Silent p.S226S 0.51 TCGA-EE-A29E-06 19 51528013 51528013 G A KLK11 Silent p.F58F 0.47 TCGA-EE-A29E-06 19 51535133 51535133 C T KLK12 Silent p.R152R 0.37 TCGA-EE-A29E-06 19 51535145 51535145 G A KLK12 Silent p.T148T 0.35 TCGA-EE-A29E-06 19 51729189 51729189 C T CD33 Silent p.A183A 0.37 TCGA-EE-A29E-06 19 51918507 51918507 C T SIGLEC10 Missense_Mutation p.E420K 0.44 tolerated(0.06) possibly_damaging(0.499) TCGA-EE-A29E-06 19 51983931 51983931 C T CEACAM18 Silent p.L194L 0.47 TCGA-EE-A29E-06 19 51994836 51994836 C T SIGLEC12 3'UTR 0.49 TCGA-EE-A29E-06 19 52249131 52249131 C T FPR1 3'UTR 0.49 TCGA-EE-A29E-06 19 52529067 52529067 G A ZNF614 5'UTR 0.45 TCGA-EE-A29E-06 19 52955190 52955190 G A ZNF578 5'Flank 0.36 TCGA-EE-A29E-06 19 53014946 53014946 C T ZNF578 Missense_Mutation p.H438Y 0.38 tolerated(0.55) benign(0.354) TCGA-EE-A29E-06 19 53057053 53057053 C T ZNF808 Missense_Mutation p.S295F 0.37 tolerated(0.06) possibly_damaging(0.709) TCGA-EE-A29E-06 19 53079226 53079226 C T ZNF701 Silent p.L98L 0.37 TCGA-EE-A29E-06 19 53571981 53571981 A T ZNF160 Missense_Mutation p.F602L 0.41 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A29E-06 19 53619571 53619571 G A ZNF415 Missense_Mutation p.S44F 0.44 tolerated(0.14) benign(0.028) TCGA-EE-A29E-06 19 54257349 54257349 G A MIR527 RNA 0.41 TCGA-EE-A29E-06 19 54312892 54312892 C T NLRP12 Missense_Mutation p.G674E 0.37 tolerated(1) benign(0.003) TCGA-EE-A29E-06 19 54376896 54376896 T A MYADM Missense_Mutation p.L38H 0.44 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 19 54394961 54394961 C T PRKCG Missense_Mutation p.P188L 0.33 deleterious(0.02) possibly_damaging(0.773) TCGA-EE-A29E-06 19 54403565 54403565 G A PRKCG Missense_Mutation p.E454K 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 19 54418665 54418665 C T CACNG7 Silent p.L110L 0.42 TCGA-EE-A29E-06 19 54445576 54445576 C T CACNG7 3'UTR 0.43 TCGA-EE-A29E-06 19 54761067 54761067 C T LILRB5 5'UTR 0.24 TCGA-EE-A29E-06 19 55107356 55107356 C T LILRA1 Missense_Mutation p.S305F 0.42 deleterious(0.01) benign(0.429) TCGA-EE-A29E-06 19 55177322 55177322 C A LILRB4 Missense_Mutation p.L272I 0.59 deleterious(0.02) possibly_damaging(0.874) TCGA-EE-A29E-06 19 55177872 55177872 C T LILRB4 Nonsense_Mutation p.Q325* 0.29 TCGA-EE-A29E-06 19 55221554 55221554 G A AC098784.2 3'Flank 0.26 TCGA-EE-A29E-06 19 55253431 55253431 C T KIR2DL3 Missense_Mutation p.H26Y 0.38 tolerated(0.82) benign(0.441) TCGA-EE-A29E-06 19 55263828 55263828 G A KIR2DL3 Missense_Mutation p.E295K 0.35 tolerated(0.45) benign(0.214) TCGA-EE-A29E-06 19 55324584 55324584 C T KIR2DL4 Intron 0.89 TCGA-EE-A29E-06 19 55346533 55346533 G A KIR3DL1 3'Flank 0.90 TCGA-EE-A29E-06 19 55451437 55451437 G A NLRP7 Silent p.F250F 0.35 TCGA-EE-A29E-06 19 55495086 55495086 G A NLRP2 Missense_Mutation p.E674K 0.49 tolerated(0.24) benign(0.137) TCGA-EE-A29E-06 19 55568048 55568048 G A RDH13 Nonsense_Mutation p.R105* 0.30 TCGA-EE-A29E-06 19 55591171 55591171 G A EPS8L1 Silent p.L77L 0.44 TCGA-EE-A29E-06 19 55707938 55707938 C T PTPRH Missense_Mutation p.G737R 0.34 probably_damaging(0.99) TCGA-EE-A29E-06 19 55718304 55718304 G A PTPRH Silent p.N35N 0.41 TCGA-EE-A29E-06 19 56312989 56312989 G A NLRP11 Missense_Mutation p.S707L 0.50 tolerated(0.14) possibly_damaging(0.681) TCGA-EE-A29E-06 19 56363517 56363517 G A NLRP4 Missense_Mutation p.R24K 0.51 tolerated(0.9) benign(0.017) TCGA-EE-A29E-06 19 56368917 56368917 G A NLRP4 Intron 0.75 TCGA-EE-A29E-06 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.38 deleterious(0) possibly_damaging(0.882) TCGA-EE-A29E-06 19 56382295 56382295 G A NLRP4 Silent p.L819L 0.47 TCGA-EE-A29E-06 19 56388524 56388524 G A NLRP4 Silent p.E896E 0.33 TCGA-EE-A29E-06 19 56421975 56421975 G A NLRP13 Missense_Mutation p.L746F 0.28 tolerated(0.17) probably_damaging(0.999) TCGA-EE-A29E-06 19 56423184 56423184 C T NLRP13 Missense_Mutation p.E667K 0.40 tolerated(0.2) benign(0.001) TCGA-EE-A29E-06 19 56423185 56423185 C T NLRP13 Silent p.L666L 0.39 TCGA-EE-A29E-06 19 56424209 56424209 C T NLRP13 Missense_Mutation p.S325N 0.37 tolerated(1) benign(0.002) TCGA-EE-A29E-06 19 56424543 56424543 C T NLRP13 Missense_Mutation p.E214K 0.34 tolerated(0.21) possibly_damaging(0.815) TCGA-EE-A29E-06 19 56459354 56459354 T A NLRP8 Missense_Mutation p.F29Y 0.37 tolerated_low_confidence(0.79) benign(0.027) TCGA-EE-A29E-06 19 56467279 56467279 G A NLRP8 Missense_Mutation p.E619K 0.42 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A29E-06 19 56473562 56473562 G A NLRP8 Silent p.A724A 0.29 TCGA-EE-A29E-06 19 56487507 56487507 A T NLRP8 Missense_Mutation p.K905M 0.26 deleterious(0.05) possibly_damaging(0.804) TCGA-EE-A29E-06 19 56499320 56499320 C T NLRP8 3'UTR 0.64 TCGA-EE-A29E-06 19 56539526 56539526 G A NLRP5 Missense_Mutation p.E643K 0.31 tolerated(1) benign(0.001) TCGA-EE-A29E-06 19 56704272 56704272 G A ZSCAN5B Silent p.F50F 0.41 TCGA-EE-A29E-06 19 56935630 56935630 C T ZNF583 Missense_Mutation p.L535F 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 19 57088184 57088184 C T ZNF470 Silent p.D129D 0.39 TCGA-EE-A29E-06 19 57176328 57176328 G A ZNF835 Missense_Mutation p.S80F 0.38 deleterious(0.03) benign(0.002) TCGA-EE-A29E-06 19 57325729 57325729 C T PEG3 Missense_Mutation p.D1361N 0.36 deleterious(0.05) benign(0.108) TCGA-EE-A29E-06 19 5763295 5763295 C T CATSPERD Silent p.I499I 0.47 TCGA-EE-A29E-06 19 57723784 57723784 C T ZNF264 Missense_Mutation p.S440F 0.38 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A29E-06 19 58198865 58198865 C T ZNF551 Nonsense_Mutation p.R408* 0.47 TCGA-EE-A29E-06 19 58199596 58199596 C T ZNF551 Silent p.S651S 0.47 TCGA-EE-A29E-06 19 5831470 5831470 C T FUT6 3'UTR 0.39 TCGA-EE-A29E-06 19 5831614 5831614 C T FUT6 Missense_Mutation p.R322Q 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 58437565 58437565 G A ZNF418 Missense_Mutation p.L662F 0.40 tolerated(0.1) probably_damaging(0.985) TCGA-EE-A29E-06 19 58452658 58452658 G A ZNF256 Silent p.L506L 0.37 TCGA-EE-A29E-06 19 58472857 58472857 G A C19orf18 Missense_Mutation p.P145L 0.40 deleterious(0) probably_damaging(0.96) TCGA-EE-A29E-06 19 58489652 58489652 G A ZNF606 3'UTR 0.42 TCGA-EE-A29E-06 19 58549427 58549427 G A ZSCAN1 Missense_Mutation p.E75K 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 19 5867303 5867303 C T FUT5 Nonsense_Mutation p.W145* 0.38 TCGA-EE-A29E-06 19 5867503 5867503 G A FUT5 Silent p.I78I 0.42 TCGA-EE-A29E-06 19 58982657 58982657 C T ZNF324 Silent p.F266F 0.42 TCGA-EE-A29E-06 19 58983411 58983411 C T ZNF324 Missense_Mutation p.P518S 0.23 tolerated_low_confidence(0.3) benign(0.003) TCGA-EE-A29E-06 19 58991593 58991593 G A ZNF446 Missense_Mutation p.G285S 0.42 tolerated(0.73) benign(0.098) TCGA-EE-A29E-06 19 59028923 59028923 G A ZBTB45 Missense_Mutation p.R40C 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 19 59068131 59068131 G A UBE2M Silent p.P90P 0.38 TCGA-EE-A29E-06 19 6182904 6182904 G A ACSBG2 Missense_Mutation p.R350K 0.42 tolerated(1) benign(0.015) TCGA-EE-A29E-06 19 6270642 6270642 G A MLLT1 Silent p.F47F 0.44 TCGA-EE-A29E-06 19 6309842 6309842 G A ACER1 Silent p.S118S 0.43 TCGA-EE-A29E-06 19 6679182 6679182 G A C3 Silent p.T1528T 0.24 TCGA-EE-A29E-06 19 6681979 6681979 C T C3 Silent p.R1441R 0.41 TCGA-EE-A29E-06 19 6926380 6926380 G A EMR1 Missense_Mutation p.G664S 0.48 tolerated(0.12) possibly_damaging(0.612) TCGA-EE-A29E-06 19 6974614 6974614 C T EMR4P RNA 0.34 TCGA-EE-A29E-06 19 746432 746432 A C PALM Missense_Mutation p.E261A 0.35 tolerated(0.32) benign(0.023) TCGA-EE-A29E-06 19 746527 746527 G A PALM Missense_Mutation p.G293S 0.47 tolerated(1) benign(0.035) TCGA-EE-A29E-06 19 7509205 7509205 C T ARHGEF18 Silent p.F304F 0.44 TCGA-EE-A29E-06 19 7677134 7677134 C T CAMSAP3 Silent p.S612S 0.50 TCGA-EE-A29E-06 19 7682509 7682509 G A CAMSAP3 Missense_Mutation p.G1163S 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 19 8146339 8146339 G A FBN3 Silent p.P2413P 0.52 TCGA-EE-A29E-06 19 8188379 8188379 G A FBN3 Silent p.F1017F 0.43 TCGA-EE-A29E-06 19 8212199 8212199 C T FBN3 Missense_Mutation p.G56R 0.31 deleterious(0) benign(0.263) TCGA-EE-A29E-06 19 8670589 8670589 G A ADAMTS10 Missense_Mutation p.P3S 0.50 tolerated_low_confidence(0.44) benign(0.001) TCGA-EE-A29E-06 19 873482 873482 G A MED16 Silent p.F624F 0.38 TCGA-EE-A29E-06 19 8841976 8841976 G A OR2Z1 Missense_Mutation p.E196K 0.49 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A29E-06 19 8953931 8953931 A G MBD3L1 Missense_Mutation p.K193E 0.41 tolerated(0.08) possibly_damaging(0.757) TCGA-EE-A29E-06 19 8987295 8987295 G A MUC16 Missense_Mutation p.T13931I 0.39 probably_damaging(1) TCGA-EE-A29E-06 19 8995651 8995651 C T MUC16 Silent p.S13779S 0.36 TCGA-EE-A29E-06 19 8996339 8996339 C T MUC16 Missense_Mutation p.D13745N 0.41 possibly_damaging(0.469) TCGA-EE-A29E-06 19 9014700 9014700 C T MUC16 Missense_Mutation p.E12759K 0.41 possibly_damaging(0.545) TCGA-EE-A29E-06 19 9046027 9046027 G A MUC16 Silent p.S11868S 0.43 TCGA-EE-A29E-06 19 9046028 9046028 G A MUC16 Missense_Mutation p.S11868F 0.43 possibly_damaging(0.702) TCGA-EE-A29E-06 19 9047769 9047769 C T MUC16 Missense_Mutation p.E11288K 0.42 benign(0.007) TCGA-EE-A29E-06 19 9048182 9048182 C T MUC16 Missense_Mutation p.G11150E 0.47 benign(0.007) TCGA-EE-A29E-06 19 9057157 9057157 G A MUC16 Missense_Mutation p.H10097Y 0.48 benign(0.007) TCGA-EE-A29E-06 19 9057747 9057747 C T MUC16 Missense_Mutation p.G9900E 0.35 unknown(0) TCGA-EE-A29E-06 19 9058027 9058027 G A MUC16 Missense_Mutation p.H9807Y 0.23 unknown(0) TCGA-EE-A29E-06 19 9058186 9058186 G A MUC16 Missense_Mutation p.P9754S 0.32 unknown(0) TCGA-EE-A29E-06 19 9058245 9058245 G A MUC16 Missense_Mutation p.P9734L 0.41 unknown(0) TCGA-EE-A29E-06 19 9060853 9060853 G A MUC16 Missense_Mutation p.P8865S 0.38 unknown(0) TCGA-EE-A29E-06 19 9063558 9063558 G A MUC16 Missense_Mutation p.P7963L 0.44 unknown(0) TCGA-EE-A29E-06 19 9063951 9063951 C T MUC16 Missense_Mutation p.G7832E 0.26 unknown(0) TCGA-EE-A29E-06 19 9063952 9063952 C T MUC16 Missense_Mutation p.G7832R 0.30 unknown(0) TCGA-EE-A29E-06 19 9066356 9066356 G A MUC16 Silent p.I7030I 0.48 TCGA-EE-A29E-06 19 9069052 9069052 C T MUC16 Missense_Mutation p.D6132N 0.43 unknown(0) TCGA-EE-A29E-06 19 9072284 9072284 C T MUC16 Silent p.L5054L 0.48 TCGA-EE-A29E-06 19 9074244 9074244 G A MUC16 Missense_Mutation p.P4401L 0.35 unknown(0) TCGA-EE-A29E-06 19 9076530 9076530 C T MUC16 Missense_Mutation p.G3639E 0.30 unknown(0) TCGA-EE-A29E-06 19 9083502 9083502 C T MUC16 Silent p.T2771T 0.46 TCGA-EE-A29E-06 19 9086617 9086617 G A MUC16 Missense_Mutation p.S1733F 0.40 unknown(0) TCGA-EE-A29E-06 19 9088509 9088509 G A MUC16 Silent p.F1102F 0.48 TCGA-EE-A29E-06 19 917677 917677 G A KISS1R Missense_Mutation p.G59R 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 19 9226317 9226317 C T OR7G1 Silent p.G41G 0.45 TCGA-EE-A29E-06 19 9296980 9296980 C T OR7D2 Missense_Mutation p.P175S 0.41 tolerated_low_confidence(0.09) possibly_damaging(0.831) TCGA-EE-A29E-06 19 9578225 9578225 C T ZNF560 Silent p.G466G 0.39 TCGA-EE-A29E-06 19 9940731 9940731 C T UBL5 3'UTR 0.46 TCGA-EE-A29E-06 19 9967571 9967571 C T OLFM2 Missense_Mutation p.G200E 0.38 tolerated(0.53) benign(0.386) TCGA-EE-A29E-06 1 100318230 100318230 C T AGL Intron 0.65 TCGA-EE-A29E-06 1 100464871 100464871 C T SLC35A3 Missense_Mutation p.P81L 0.31 tolerated(0.09) benign(0.411) TCGA-EE-A29E-06 1 102296230 102296230 G A OLFM3 Nonsense_Mutation p.Q124* 0.39 TCGA-EE-A29E-06 1 103467519 103467519 G A COL11A1 Missense_Mutation p.P702S 0.47 unknown(0) TCGA-EE-A29E-06 1 103488462 103488462 C T COL11A1 Missense_Mutation p.E361K 0.37 possibly_damaging(0.833) TCGA-EE-A29E-06 1 10383993 10383993 C T KIF1B Missense_Mutation p.P758S 0.50 tolerated(0.12) benign(0.028) TCGA-EE-A29E-06 1 104166596 104166596 C T AMY2A Missense_Mutation p.R404C 0.15 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29E-06 1 10479551 10479551 C T PGD Silent p.F429F 0.43 TCGA-EE-A29E-06 1 10709446 10709446 C T CASZ1 Missense_Mutation p.E977K 0.24 deleterious_low_confidence(0.01) benign(0.133) TCGA-EE-A29E-06 1 10710808 10710808 C T CASZ1 Missense_Mutation p.E941K 0.43 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-EE-A29E-06 1 107691078 107691078 C T NTNG1 5'UTR 0.46 TCGA-EE-A29E-06 1 109363230 109363230 C T AKNAD1 Missense_Mutation p.R729Q 0.31 tolerated(0.71) benign(0.005) TCGA-EE-A29E-06 1 109824339 109824339 G A PSRC1 Missense_Mutation p.P141S 0.42 deleterious(0.04) possibly_damaging(0.453) TCGA-EE-A29E-06 1 109824340 109824340 G A PSRC1 Silent p.S140S 0.43 TCGA-EE-A29E-06 1 110018278 110018278 G A SYPL2 Missense_Mutation p.E69K 0.33 tolerated(1) possibly_damaging(0.683) TCGA-EE-A29E-06 1 110022306 110022306 G A SYPL2 3'UTR 0.53 TCGA-EE-A29E-06 1 110030402 110030402 C T ATXN7L2 Missense_Mutation p.P226S 0.45 tolerated(0.61) benign(0.072) TCGA-EE-A29E-06 1 11008286 11008286 C T C1orf127 Missense_Mutation p.G636R 0.45 tolerated(0.1) probably_damaging(0.991) TCGA-EE-A29E-06 1 11008779 11008779 C T C1orf127 Silent p.G471G 0.27 TCGA-EE-A29E-06 1 110155568 110155568 G A GNAT2 5'UTR 0.32 TCGA-EE-A29E-06 1 110257566 110257566 C T GSTM5 Intron 0.41 TCGA-EE-A29E-06 1 110466437 110466437 G A CSF1 Silent p.P398P 0.39 TCGA-EE-A29E-06 1 110466438 110466438 G A CSF1 Missense_Mutation p.E399K 0.43 tolerated(0.15) benign(0.041) TCGA-EE-A29E-06 1 110564393 110564393 C T AHCYL1 3'UTR 0.53 TCGA-EE-A29E-06 1 110740838 110740838 C T SLC6A17 Silent p.S652S 0.53 TCGA-EE-A29E-06 1 110775514 110775514 C T KCNC4 3'UTR 0.47 TCGA-EE-A29E-06 1 111215758 111215758 C T KCNA3 Silent p.T558T 0.43 TCGA-EE-A29E-06 1 111435132 111435132 G A CD53 Missense_Mutation p.E77K 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 111494466 111494466 G A LRIF1 Missense_Mutation p.S347F 0.41 deleterious(0) probably_damaging(0.919) TCGA-EE-A29E-06 1 1120453 1120453 G A TTLL10 Silent p.R455R 0.36 TCGA-EE-A29E-06 1 112318747 112318747 C T KCND3 Silent p.T640T 0.44 TCGA-EE-A29E-06 1 113124694 113124694 T C ST7L Missense_Mutation p.N330S 0.42 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A29E-06 1 113266593 113266593 C T FAM19A3 Missense_Mutation p.R98C 0.46 deleterious(0.01) benign(0) TCGA-EE-A29E-06 1 114184754 114184754 C T MAGI3 Missense_Mutation p.P528S 0.52 tolerated(1) benign(0.001) TCGA-EE-A29E-06 1 114380911 114380911 G T PTPN22 Missense_Mutation p.P371T 0.57 deleterious(0.02) benign(0.36) TCGA-EE-A29E-06 1 114394690 114394690 G A PTPN22 Missense_Mutation p.R263W 0.29 deleterious(0) benign(0) TCGA-EE-A29E-06 1 114399254 114399254 G A PTPN22 Intron 0.28 TCGA-EE-A29E-06 1 114523546 114523546 C T OLFML3 Intron 0.45 TCGA-EE-A29E-06 1 1149454 1149454 G A TNFRSF4 Silent p.L18L 0.67 TCGA-EE-A29E-06 1 115215893 115215893 C T AMPD1 Missense_Mutation p.E729K 0.38 tolerated(0.85) possibly_damaging(0.88) TCGA-EE-A29E-06 1 115218274 115218274 C T AMPD1 Missense_Mutation p.S552N 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 1 115453027 115453027 G A SYCP1 Missense_Mutation p.E444K 0.39 deleterious(0.02) benign(0.257) TCGA-EE-A29E-06 1 115600211 115600211 C T TSPAN2 Missense_Mutation p.E155K 0.34 tolerated(0.87) benign(0.228) TCGA-EE-A29E-06 1 11586830 11586830 C T PTCHD2 Silent p.A912A 0.36 TCGA-EE-A29E-06 1 116666839 116666839 G A MAB21L3 Silent p.L114L 0.39 TCGA-EE-A29E-06 1 116932243 116932243 C T ATP1A1 Missense_Mutation p.L313F 0.54 tolerated(0.07) probably_damaging(0.969) TCGA-EE-A29E-06 1 117297170 117297170 C T CD2 Missense_Mutation p.S19F 0.48 deleterious(0.01) possibly_damaging(0.605) TCGA-EE-A29E-06 1 117576494 117576494 C T CD101 Missense_Mutation p.P946L 0.45 tolerated(1) benign(0.005) TCGA-EE-A29E-06 1 117663645 117663645 G A TRIM45 Missense_Mutation p.S60L 0.46 deleterious(0.01) benign(0.36) TCGA-EE-A29E-06 1 11766526 11766526 C T DRAXIN Silent p.L71L 0.50 TCGA-EE-A29E-06 1 118535128 118535128 T G SPAG17 Silent p.I1774I 0.44 TCGA-EE-A29E-06 1 118539095 118539095 C T SPAG17 Missense_Mutation p.G1651R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 118609430 118609430 C T SPAG17 Missense_Mutation p.M826I 0.39 deleterious(0) possibly_damaging(0.648) TCGA-EE-A29E-06 1 120056793 120056793 G A HSD3B1 Missense_Mutation p.G216E 0.47 tolerated(0.23) benign(0.371) TCGA-EE-A29E-06 1 120301818 120301818 G A HMGCS2 Missense_Mutation p.S258F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 120437545 120437545 C T ADAM30 Missense_Mutation p.G472E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 120839807 120839807 C T FAM72B 5'UTR 0.31 TCGA-EE-A29E-06 1 120930274 120930274 G A FCGR1B Silent p.V109V 0.45 TCGA-EE-A29E-06 1 1269724 1269724 G A TAS1R3 Silent p.R813R 0.54 TCGA-EE-A29E-06 1 1275457 1275457 G A DVL1 Silent p.A290A 0.34 TCGA-EE-A29E-06 1 13036289 13036289 G A PRAMEF22 Missense_Mutation p.A121T 0.58 tolerated(0.25) benign(0.272) TCGA-EE-A29E-06 1 1333983 1333983 G A CCNL2 Silent p.S119S 0.39 TCGA-EE-A29E-06 1 13695737 13695737 C T PRAMEF19 Missense_Mutation p.E410K 0.37 possibly_damaging(0.863) TCGA-EE-A29E-06 1 13743086 13743086 G A PRAMEF20 Missense_Mutation p.R92K 0.46 tolerated(1) benign(0.006) TCGA-EE-A29E-06 1 142713063 142713063 C T RP11-417J8.6 RNA 0.14 TCGA-EE-A29E-06 1 143767635 143767635 C T PPIAL4G Missense_Mutation p.G72S 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.677) TCGA-EE-A29E-06 1 144825421 144825421 C T NBPF9 Missense_Mutation p.S457L 0.54 tolerated(1) probably_damaging(0.988) TCGA-EE-A29E-06 1 144877221 144877221 C T PDE4DIP Missense_Mutation p.R1489Q 0.08 deleterious(0) probably_damaging(0.918) TCGA-EE-A29E-06 1 144882665 144882665 G A PDE4DIP Silent p.L1118L 0.30 TCGA-EE-A29E-06 1 145015921 145015921 G A RP11-326G21.1 5'Flank 0.13 TCGA-EE-A29E-06 1 145115915 145115915 G A SEC22B RNA 0.09 TCGA-EE-A29E-06 1 145416931 145416931 C T HFE2 Nonsense_Mutation p.Q426* 0.39 TCGA-EE-A29E-06 1 145584814 145584814 C T PIAS3 Missense_Mutation p.S533L 0.18 deleterious_low_confidence(0.01) benign(0.211) TCGA-EE-A29E-06 1 146658672 146658672 G A FMO5 Missense_Mutation p.P470L 0.46 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 1 147086262 147086262 C T BCL9 Missense_Mutation p.S136F 0.53 deleterious(0.01) benign(0.097) TCGA-EE-A29E-06 1 147087640 147087640 A G BCL9 Missense_Mutation p.I200V 0.56 deleterious(0) possibly_damaging(0.673) TCGA-EE-A29E-06 1 147091892 147091892 C T BCL9 Missense_Mutation p.P644L 0.43 deleterious(0.02) benign(0.162) TCGA-EE-A29E-06 1 149879641 149879641 G A SV2A Silent p.F499F 0.31 TCGA-EE-A29E-06 1 149901688 149901688 G A MTMR11 Missense_Mutation p.R590C 0.66 deleterious(0) probably_damaging(0.93) TCGA-EE-A29E-06 1 150445749 150445749 C T RPRD2 Missense_Mutation p.P1442L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29E-06 1 150551546 150551546 G A MCL1 Missense_Mutation p.T154I 0.53 deleterious(0.01) benign(0.008) TCGA-EE-A29E-06 1 150724269 150724269 G A CTSS Silent p.P205P 0.31 TCGA-EE-A29E-06 1 150795777 150795777 G A ARNT Silent p.F429F 0.59 TCGA-EE-A29E-06 1 151062912 151062912 C T GABPB2 Nonsense_Mutation p.Q47* 0.53 TCGA-EE-A29E-06 1 151148993 151148993 G A VPS72 3'UTR 0.61 TCGA-EE-A29E-06 1 151259392 151259392 A C ZNF687 Missense_Mutation p.M209L 0.27 tolerated(1) benign(0) TCGA-EE-A29E-06 1 151666197 151666197 C T SNX27 3'UTR 0.62 TCGA-EE-A29E-06 1 152057979 152057979 C T TCHHL1 Missense_Mutation p.D727N 0.55 tolerated(0.41) benign(0.006) TCGA-EE-A29E-06 1 152058080 152058080 C T TCHHL1 Missense_Mutation p.G693E 0.30 tolerated(1) benign(0.001) TCGA-EE-A29E-06 1 152058291 152058291 C T TCHHL1 Missense_Mutation p.E623K 0.29 tolerated(0.12) benign(0.063) TCGA-EE-A29E-06 1 152127612 152127612 T C RPTN Missense_Mutation p.S655G 0.52 deleterious(0.01) benign(0.293) TCGA-EE-A29E-06 1 152129259 152129259 C T RPTN Missense_Mutation p.E106K 0.28 tolerated(0.14) benign(0.014) TCGA-EE-A29E-06 1 152188315 152188315 G A HRNR Silent p.S1930S 0.06 TCGA-EE-A29E-06 1 152193735 152193735 C T HRNR Missense_Mutation p.E124K 0.24 benign(0.349) TCGA-EE-A29E-06 1 152195619 152195619 C T HRNR Silent p.L37L 0.24 TCGA-EE-A29E-06 1 152275979 152275979 C T FLG Missense_Mutation p.G3795R 0.27 unknown(0) TCGA-EE-A29E-06 1 152279872 152279872 G A FLG Missense_Mutation p.S2497F 0.33 probably_damaging(0.992) TCGA-EE-A29E-06 1 152280545 152280545 C T FLG Missense_Mutation p.E2273K 0.31 benign(0.292) TCGA-EE-A29E-06 1 152281990 152281990 C T FLG Missense_Mutation p.R1791K 0.49 benign(0.067) TCGA-EE-A29E-06 1 152285377 152285377 G A FLG Missense_Mutation p.S662F 0.31 benign(0.234) TCGA-EE-A29E-06 1 152285609 152285609 C T FLG Missense_Mutation p.G585R 0.44 possibly_damaging(0.841) TCGA-EE-A29E-06 1 152323669 152323669 C T FLG2 Missense_Mutation p.G2198E 0.50 possibly_damaging(0.874) TCGA-EE-A29E-06 1 152382811 152382811 C T CRNN Silent p.Q249Q 0.56 TCGA-EE-A29E-06 1 152552401 152552401 C G LCE3D Missense_Mutation p.Q4H 0.48 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29E-06 1 152748928 152748928 G A LCE1F Silent p.P27P 0.57 TCGA-EE-A29E-06 1 152759961 152759961 C T LCE1E Silent p.S62S 0.37 TCGA-EE-A29E-06 1 152760155 152760155 C T LCE1E 3'UTR 0.55 TCGA-EE-A29E-06 1 152883961 152883961 G A IVL Missense_Mutation p.G563E 0.54 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29E-06 1 152884104 152884104 C T IVL 3'UTR 0.44 TCGA-EE-A29E-06 1 152944429 152944429 G A SPRR4 Silent p.Q21Q 0.40 TCGA-EE-A29E-06 1 152944435 152944435 G A SPRR4 Silent p.V23V 0.38 TCGA-EE-A29E-06 1 152975776 152975776 C T SPRR3 Missense_Mutation p.P94S 0.50 tolerated(0.12) possibly_damaging(0.46) TCGA-EE-A29E-06 1 153066241 153066241 C T SPRR2E 5'UTR 0.14 TCGA-EE-A29E-06 1 153391710 153391710 C T S100A7A Silent p.S77S 0.47 TCGA-EE-A29E-06 1 153665843 153665843 C T NPR1 Missense_Mutation p.R1047W 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29E-06 1 154459121 154459121 C T SHE Missense_Mutation p.E355K 0.50 tolerated(0.08) benign(0.15) TCGA-EE-A29E-06 1 154570414 154570414 G A ADAR Silent p.S608S 0.38 TCGA-EE-A29E-06 1 154680613 154680613 C T KCNN3 Missense_Mutation p.D679N 0.42 tolerated(0.08) benign(0.308) TCGA-EE-A29E-06 1 154961257 154961257 C T FLAD1 Missense_Mutation p.S350L 0.56 tolerated(0.22) benign(0.009) TCGA-EE-A29E-06 1 155005627 155005627 C T DCST2 Missense_Mutation p.E128K 0.45 deleterious(0) probably_damaging(0.985) TCGA-EE-A29E-06 1 155013989 155013989 G A DCST1 Silent p.G216G 0.31 TCGA-EE-A29E-06 1 155227153 155227153 G A SCAMP3 Silent p.F234F 0.38 TCGA-EE-A29E-06 1 155448429 155448429 G A ASH1L Missense_Mutation p.P1411L 0.61 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 1 155491261 155491261 C T ASH1L Missense_Mutation p.G17D 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 1 155491262 155491262 C T ASH1L Missense_Mutation p.G17S 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29E-06 1 155912019 155912019 G A RXFP4 Silent p.T173T 0.59 TCGA-EE-A29E-06 1 156047386 156047386 C T MEX3A Missense_Mutation p.G181E 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 156128176 156128176 C T SEMA4A Intron 0.47 TCGA-EE-A29E-06 1 156247024 156247024 G A SMG5 Silent p.H102H 0.66 TCGA-EE-A29E-06 1 156374372 156374372 G A C1orf61 Missense_Mutation p.H149Y 0.29 tolerated_low_confidence(1) benign(0.094) TCGA-EE-A29E-06 1 156697010 156697010 G A ISG20L2 Silent p.S145S 0.59 TCGA-EE-A29E-06 1 156851296 156851296 C T NTRK1 Silent p.A751A 0.73 TCGA-EE-A29E-06 1 156880483 156880483 G A PEAR1 Silent p.S633S 0.26 TCGA-EE-A29E-06 1 156883066 156883066 C T PEAR1 Missense_Mutation p.P835S 0.26 tolerated(0.28) benign(0.031) TCGA-EE-A29E-06 1 156902313 156902313 G A LRRC71 Silent p.V513V 0.27 TCGA-EE-A29E-06 1 156948061 156948061 G A ARHGEF11 Missense_Mutation p.P149S 0.30 deleterious(0.03) possibly_damaging(0.503) TCGA-EE-A29E-06 1 156948062 156948062 G A ARHGEF11 Silent p.I148I 0.30 TCGA-EE-A29E-06 1 157490960 157490960 G A FCRL5 Missense_Mutation p.H788Y 0.26 tolerated(0.06) benign(0.35) TCGA-EE-A29E-06 1 157545297 157545297 C T FCRL4 3'UTR 0.45 TCGA-EE-A29E-06 1 157545358 157545358 C T FCRL4 Missense_Mutation p.D502N 0.24 tolerated(0.15) benign(0.261) TCGA-EE-A29E-06 1 157567735 157567735 G A FCRL4 5'UTR 0.33 TCGA-EE-A29E-06 1 157660298 157660298 G A FCRL3 Silent p.T479T 0.59 TCGA-EE-A29E-06 1 15766800 15766800 C T CTRC Silent p.S15S 0.50 TCGA-EE-A29E-06 1 157668387 157668387 G A FCRL3 Missense_Mutation p.P29S 0.51 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29E-06 1 15767060 15767060 C T CTRC Silent p.F68F 0.44 TCGA-EE-A29E-06 1 157772449 157772449 G A FCRL1 Missense_Mutation p.P109S 0.21 deleterious(0.05) possibly_damaging(0.701) TCGA-EE-A29E-06 1 157804520 157804520 G A CD5L Missense_Mutation p.S132F 0.24 tolerated(0.26) benign(0) TCGA-EE-A29E-06 1 157805786 157805786 C T CD5L Missense_Mutation p.G72E 0.52 tolerated(0.61) benign(0.055) TCGA-EE-A29E-06 1 157805787 157805787 C T CD5L Missense_Mutation p.G72R 0.52 tolerated(0.35) benign(0.04) TCGA-EE-A29E-06 1 158262655 158262655 C T CD1C Missense_Mutation p.L294F 0.37 deleterious(0) possibly_damaging(0.887) TCGA-EE-A29E-06 1 158368795 158368795 G A OR10T2 Silent p.F154F 0.57 TCGA-EE-A29E-06 1 158389972 158389972 G A OR10K2 Missense_Mutation p.P229S 0.53 tolerated(0.18) benign(0.137) TCGA-EE-A29E-06 1 158450022 158450022 C T OR10R2 Missense_Mutation p.L119F 0.55 deleterious(0.04) benign(0.002) TCGA-EE-A29E-06 1 158516955 158516955 C T OR6Y1 Missense_Mutation p.G314E 0.27 tolerated(0.42) benign(0.021) TCGA-EE-A29E-06 1 158517319 158517319 A T OR6Y1 Missense_Mutation p.S193T 0.43 tolerated(0.1) benign(0.016) TCGA-EE-A29E-06 1 158548772 158548772 C T OR10X1 Silent p.R306R 0.51 TCGA-EE-A29E-06 1 158615042 158615042 C T SPTA1 Missense_Mutation p.R1377K 0.50 tolerated(0.07) benign(0.008) TCGA-EE-A29E-06 1 158650377 158650377 G A SPTA1 Missense_Mutation p.A225V 0.29 tolerated(0.93) benign(0.12) TCGA-EE-A29E-06 1 158687789 158687789 G A OR6K3 Silent p.I39I 0.28 TCGA-EE-A29E-06 1 158725430 158725430 C T OR6K6 Silent p.F275F 0.33 TCGA-EE-A29E-06 1 158725497 158725497 G A OR6K6 Missense_Mutation p.D298N 0.48 tolerated(0.1) possibly_damaging(0.896) TCGA-EE-A29E-06 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.33 tolerated(0.38) benign(0.101) TCGA-EE-A29E-06 1 159170642 159170642 C T CADM3 Missense_Mutation p.A410V 0.35 tolerated(0.1) possibly_damaging(0.638) TCGA-EE-A29E-06 1 159175620 159175620 C T DARC Silent p.L133L 0.57 TCGA-EE-A29E-06 1 159283647 159283647 G A OR10J3 Missense_Mutation p.S268F 0.29 deleterious(0.05) benign(0.111) TCGA-EE-A29E-06 1 159410223 159410223 C T OR10J1 Silent p.F225F 0.39 TCGA-EE-A29E-06 1 159505008 159505008 C T OR10J5 Missense_Mutation p.E264K 0.49 tolerated(0.46) possibly_damaging(0.458) TCGA-EE-A29E-06 1 159799843 159799843 C T SLAMF8 Silent p.F76F 0.59 TCGA-EE-A29E-06 1 159846395 159846395 G A CCDC19 Silent p.L435L 0.28 TCGA-EE-A29E-06 1 159921493 159921493 C T SLAMF9 Missense_Mutation p.M276I 0.30 tolerated(0.31) benign(0.008) TCGA-EE-A29E-06 1 160062869 160062869 G A IGSF8 Missense_Mutation p.S386F 0.48 deleterious(0.02) possibly_damaging(0.794) TCGA-EE-A29E-06 1 160098870 160098870 C T ATP1A2 Silent p.S439S 0.31 TCGA-EE-A29E-06 1 160104985 160104985 C T ATP1A2 Missense_Mutation p.S672L 0.39 tolerated(0.06) benign(0.006) TCGA-EE-A29E-06 1 160109445 160109445 T A ATP1A2 Silent p.I952I 0.47 TCGA-EE-A29E-06 1 160163593 160163593 G A CASQ1 Missense_Mutation p.D141N 0.69 tolerated(0.17) possibly_damaging(0.756) TCGA-EE-A29E-06 1 160165270 160165270 T G CASQ1 Missense_Mutation p.D199E 0.34 tolerated(1) benign(0.015) TCGA-EE-A29E-06 1 160385668 160385668 C T VANGL2 Missense_Mutation p.S14L 0.31 deleterious(0) unknown(0) TCGA-EE-A29E-06 1 160385896 160385896 G A VANGL2 Missense_Mutation p.R39Q 0.26 tolerated(0.08) unknown(0) TCGA-EE-A29E-06 1 160456457 160456457 G A SLAMF6 3'UTR 0.62 TCGA-EE-A29E-06 1 160465953 160465953 G A SLAMF6 Silent p.L94L 0.51 TCGA-EE-A29E-06 1 160766023 160766023 T A LY9 Missense_Mutation p.F16I 0.29 deleterious(0.04) possibly_damaging(0.573) TCGA-EE-A29E-06 1 160769557 160769557 G A LY9 Missense_Mutation p.G47R 0.63 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29E-06 1 160771614 160771614 C T LY9 Intron 0.58 TCGA-EE-A29E-06 1 160784216 160784216 G A LY9 Missense_Mutation p.G246E 0.23 deleterious(0.04) probably_damaging(0.974) TCGA-EE-A29E-06 1 160786513 160786513 A C LY9 Missense_Mutation p.K401T 0.50 tolerated(0.07) possibly_damaging(0.734) TCGA-EE-A29E-06 1 160788108 160788108 G A LY9 Silent p.R481R 0.25 TCGA-EE-A29E-06 1 160811109 160811109 C T CD244 Silent p.E187E 0.52 TCGA-EE-A29E-06 1 160811674 160811674 C T CD244 Missense_Mutation p.D27N 0.38 tolerated(0.12) benign(0.091) TCGA-EE-A29E-06 1 161044479 161044479 C T PVRL4 Missense_Mutation p.E308K 0.25 tolerated(0.37) possibly_damaging(0.593) TCGA-EE-A29E-06 1 162124242 162124242 C T NOS1AP Silent p.I51I 0.58 TCGA-EE-A29E-06 1 162325066 162325066 G A NOS1AP Missense_Mutation p.D229N 0.53 tolerated(0.22) benign(0.002) TCGA-EE-A29E-06 1 162335266 162335266 C T RP11-565P22.6 Missense_Mutation p.L24F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 162336938 162336938 C T RP11-565P22.6 Missense_Mutation p.S87L 0.63 tolerated(0.74) benign(0.001) TCGA-EE-A29E-06 1 163117092 163117092 G A RGS5 3'UTR 0.60 TCGA-EE-A29E-06 1 16458581 16458581 G A EPHA2 Missense_Mutation p.P768L 0.45 deleterious(0) probably_damaging(0.953) TCGA-EE-A29E-06 1 16458927 16458927 G A EPHA2 Silent p.P687P 0.39 TCGA-EE-A29E-06 1 165175192 165175192 G A LMX1A Silent p.L299L 0.53 TCGA-EE-A29E-06 1 165182914 165182914 C A LMX1A Missense_Mutation p.K211N 0.60 deleterious(0) probably_damaging(0.978) TCGA-EE-A29E-06 1 165183025 165183025 G A LMX1A Silent p.L174L 0.50 TCGA-EE-A29E-06 1 16528313 16528313 G A ARHGEF19 Missense_Mutation p.P704S 0.43 tolerated(0.11) benign(0.001) TCGA-EE-A29E-06 1 165514118 165514118 C T LRRC52 Silent p.F195F 0.35 TCGA-EE-A29E-06 1 165532784 165532784 G A LRRC52 Missense_Mutation p.G222E 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29E-06 1 166904659 166904659 G A ILDR2 Silent p.V253V 0.25 TCGA-EE-A29E-06 1 166927192 166927192 G A ILDR2 Missense_Mutation p.R65C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 1 167097262 167097262 C T DUSP27 Missense_Mutation p.S965L 0.35 deleterious(0) possibly_damaging(0.755) TCGA-EE-A29E-06 1 167409913 167409913 G A CD247 Silent p.F50F 0.57 TCGA-EE-A29E-06 1 16748477 16748477 G A SPATA21 Intron 0.34 TCGA-EE-A29E-06 1 167666671 167666671 G A RCSD1 Silent p.E270E 0.58 TCGA-EE-A29E-06 1 168545900 168545900 C T XCL1 Missense_Mutation p.L9F 0.39 tolerated(0.09) possibly_damaging(0.86) TCGA-EE-A29E-06 1 169439359 169439359 G A SLC19A2 Silent p.S291S 0.25 TCGA-EE-A29E-06 1 16945743 16945743 G A RP5-1182A14.5 3'Flank 0.12 TCGA-EE-A29E-06 1 169581539 169581539 C T SELP Missense_Mutation p.E293K 0.57 tolerated(0.15) benign(0.012) TCGA-EE-A29E-06 1 169772407 169772407 C T C1orf112 Missense_Mutation p.S90F 0.37 deleterious(0.04) benign(0.059) TCGA-EE-A29E-06 1 169772408 169772408 C T C1orf112 Silent p.S90S 0.35 TCGA-EE-A29E-06 1 170511645 170511645 C T GORAB Missense_Mutation p.R170C 0.49 deleterious(0.02) probably_damaging(0.972) TCGA-EE-A29E-06 1 172525083 172525083 C T SUCO Silent p.S121S 0.71 TCGA-EE-A29E-06 1 172525121 172525121 C T SUCO Missense_Mutation p.S134F 0.57 deleterious_low_confidence(0.02) possibly_damaging(0.609) TCGA-EE-A29E-06 1 172633473 172633473 G A FASLG Splice_Site p.X132_splice 0.59 TCGA-EE-A29E-06 1 173020090 173020090 G A TNFSF18 Missense_Mutation p.P5S 0.60 tolerated_low_confidence(0.3) benign(0.001) TCGA-EE-A29E-06 1 173486714 173486714 C T SLC9C2 Missense_Mutation p.E957K 0.56 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.53 tolerated(1) benign(0.003) TCGA-EE-A29E-06 1 173556831 173556831 G A SLC9C2 Missense_Mutation p.R166C 0.23 tolerated(0.17) possibly_damaging(0.759) TCGA-EE-A29E-06 1 173569306 173569306 G A SLC9C2 Missense_Mutation p.L60F 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 17422436 17422436 C T PADI2 Missense_Mutation p.D127N 0.48 tolerated(0.28) possibly_damaging(0.861) TCGA-EE-A29E-06 1 175046581 175046581 C T TNN Silent p.F9F 0.27 TCGA-EE-A29E-06 1 175046766 175046766 C T TNN Missense_Mutation p.S71L 0.69 tolerated(0.09) benign(0.002) TCGA-EE-A29E-06 1 175063163 175063163 G A TNN Silent p.V454V 0.52 TCGA-EE-A29E-06 1 175365860 175365860 C T TNR Missense_Mutation p.E354K 0.48 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A29E-06 1 175375419 175375419 C T TNR Silent p.L144L 0.60 TCGA-EE-A29E-06 1 176525594 176525594 G A PAPPA2 Missense_Mutation p.E46K 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.526) TCGA-EE-A29E-06 1 176564074 176564074 C T PAPPA2 Missense_Mutation p.S445L 0.31 tolerated(0.66) benign(0.021) TCGA-EE-A29E-06 1 176659413 176659413 G A PAPPA2 Missense_Mutation p.E760K 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 176661333 176661333 C T PAPPA2 Nonsense_Mutation p.Q835* 0.49 TCGA-EE-A29E-06 1 176681049 176681049 G A PAPPA2 Missense_Mutation p.E1244K 0.60 tolerated(0.96) benign(0.001) TCGA-EE-A29E-06 1 17681068 17681068 G A PADI4 Missense_Mutation p.G399E 0.31 tolerated(1) benign(0.052) TCGA-EE-A29E-06 1 176905403 176905403 C T ASTN1 Silent p.Q827Q 0.21 TCGA-EE-A29E-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.56 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 1 177226260 177226260 G A BRINP2 Intron 0.52 TCGA-EE-A29E-06 1 177247805 177247805 G A BRINP2 Silent p.Q373Q 0.51 TCGA-EE-A29E-06 1 177927422 177927422 G A SEC16B Missense_Mutation p.P404S 0.43 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A29E-06 1 178411840 178411840 C T RASAL2 Missense_Mutation p.R320C 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29E-06 1 179012908 179012908 C T FAM20B 5'UTR 0.61 TCGA-EE-A29E-06 1 179354459 179354459 C T AXDND1 Silent p.D276D 0.42 TCGA-EE-A29E-06 1 180165992 180165992 C T QSOX1 Silent p.A688A 0.37 TCGA-EE-A29E-06 1 180962549 180962549 G A STX6 Nonsense_Mutation p.Q105* 0.47 TCGA-EE-A29E-06 1 181479682 181479682 T A CACNA1E Silent p.L112L 0.32 TCGA-EE-A29E-06 1 181480509 181480509 G A CACNA1E Silent p.E125E 0.50 TCGA-EE-A29E-06 1 18152297 18152297 C T ACTL8 Silent p.L128L 0.38 TCGA-EE-A29E-06 1 181702759 181702759 C T CACNA1E Silent p.V1045V 0.30 TCGA-EE-A29E-06 1 181727983 181727983 G A CACNA1E Silent p.K1528K 0.25 TCGA-EE-A29E-06 1 181745296 181745296 C T CACNA1E Silent p.S1733S 0.31 TCGA-EE-A29E-06 1 181754866 181754866 C T CACNA1E Silent p.F1899F 0.31 TCGA-EE-A29E-06 1 181767715 181767715 C T CACNA1E Silent p.S2229S 0.31 TCGA-EE-A29E-06 1 182615949 182615949 T A RGS8 Missense_Mutation p.E173V 0.60 deleterious(0) probably_damaging(0.978) TCGA-EE-A29E-06 1 183072564 183072564 C T LAMC1 Missense_Mutation p.P174S 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 183212592 183212592 G T LAMC2 3'UTR 0.40 TCGA-EE-A29E-06 1 183711383 183711383 G A RGL1 Missense_Mutation p.E31K 0.52 tolerated_low_confidence(0.2) benign(0.016) TCGA-EE-A29E-06 1 184868373 184868373 T A FAM129A Missense_Mutation p.N42I 0.56 deleterious(0.01) possibly_damaging(0.726) TCGA-EE-A29E-06 1 186274013 186274013 A G PRG4 Missense_Mutation p.K186R 0.49 probably_damaging(0.96) TCGA-EE-A29E-06 1 186415700 186415700 C T PDC Missense_Mutation p.G24E 0.33 deleterious(0) probably_damaging(0.969) TCGA-EE-A29E-06 1 186880479 186880479 C T PLA2G4A Silent p.L172L 0.27 TCGA-EE-A29E-06 1 18704809 18704809 G A IGSF21 Missense_Mutation p.E465K 0.44 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EE-A29E-06 1 18808982 18808982 G A KLHDC7A Missense_Mutation p.E503K 0.48 tolerated(0.07) benign(0.06) TCGA-EE-A29E-06 1 190067466 190067466 C T BRINP3 Missense_Mutation p.M661I 0.28 tolerated(0.18) probably_damaging(0.914) TCGA-EE-A29E-06 1 19183908 19183908 G A TAS1R2 Missense_Mutation p.R134C 0.38 deleterious(0) possibly_damaging(0.867) TCGA-EE-A29E-06 1 19199372 19199372 G A ALDH4A1 Silent p.P553P 0.52 TCGA-EE-A29E-06 1 19209669 19209669 G A ALDH4A1 Silent p.P209P 0.53 TCGA-EE-A29E-06 1 192335174 192335174 T A RGS21 Missense_Mutation p.F127I 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 196694406 196694406 C T CFH Missense_Mutation p.P618S 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 1 196857321 196857321 C T CFHR4 Missense_Mutation p.S14F 0.61 deleterious(0.01) benign(0.051) TCGA-EE-A29E-06 1 196876092 196876092 G A CFHR4 Missense_Mutation p.E180K 0.60 tolerated(0.37) probably_damaging(0.989) TCGA-EE-A29E-06 1 197029643 197029643 C A F13B Nonsense_Mutation p.E220* 0.25 TCGA-EE-A29E-06 1 197036357 197036357 C T F13B 5'UTR 0.26 TCGA-EE-A29E-06 1 197390497 197390497 G A CRB1 Silent p.R513R 0.43 TCGA-EE-A29E-06 1 197391065 197391065 G A CRB1 Missense_Mutation p.E703K 0.51 tolerated(0.75) benign(0.002) TCGA-EE-A29E-06 1 197396898 197396898 G A CRB1 Missense_Mutation p.G815R 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 1 197398614 197398614 C T CRB1 Silent p.S904S 0.21 TCGA-EE-A29E-06 1 198509782 198509782 G A ATP6V1G3 5'UTR 0.49 TCGA-EE-A29E-06 1 198676048 198676048 C T PTPRC Missense_Mutation p.P291S 0.44 deleterious(0.04) benign(0.087) TCGA-EE-A29E-06 1 198682180 198682180 C T PTPRC Missense_Mutation p.L424F 0.24 tolerated(0.48) benign(0.033) TCGA-EE-A29E-06 1 198711129 198711129 C T PTPRC Silent p.F845F 0.26 TCGA-EE-A29E-06 1 198721378 198721378 G A PTPRC Missense_Mutation p.E1070K 0.31 deleterious(0.03) possibly_damaging(0.817) TCGA-EE-A29E-06 1 200080356 200080356 G A NR5A2 Silent p.Q379Q 0.48 TCGA-EE-A29E-06 1 200880918 200880918 C T C1orf106 Missense_Mutation p.P433S 0.38 tolerated(0.1) benign(0.17) TCGA-EE-A29E-06 1 200956032 200956032 C T KIF21B Missense_Mutation p.R1210Q 0.52 tolerated(0.06) probably_damaging(0.984) TCGA-EE-A29E-06 1 200967635 200967635 C T KIF21B Missense_Mutation p.E652K 0.50 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A29E-06 1 201039456 201039456 C T CACNA1S Silent p.E768E 0.25 TCGA-EE-A29E-06 1 201063147 201063147 C T CACNA1S Silent p.E87E 0.63 TCGA-EE-A29E-06 1 20107098 20107098 G A TMCO4 Nonsense_Mutation p.Q52* 0.51 TCGA-EE-A29E-06 1 20107099 20107099 G A TMCO4 Silent p.S51S 0.51 TCGA-EE-A29E-06 1 201335988 201335988 C T TNNT2 Missense_Mutation p.E61K 0.57 tolerated(0.07) possibly_damaging(0.533) TCGA-EE-A29E-06 1 201355941 201355941 G A LAD1 Missense_Mutation p.S183F 0.33 deleterious(0.03) possibly_damaging(0.807) TCGA-EE-A29E-06 1 201762993 201762993 C T NAV1 Missense_Mutation p.A1132V 0.52 deleterious(0) possibly_damaging(0.669) TCGA-EE-A29E-06 1 201842023 201842023 C T IPO9 Missense_Mutation p.R882C 0.36 tolerated(0.07) benign(0.302) TCGA-EE-A29E-06 1 201974754 201974754 C A RNPEP Silent p.L621L 0.53 TCGA-EE-A29E-06 1 202700964 202700964 G A KDM5B Missense_Mutation p.P1338L 0.49 tolerated(0.22) probably_damaging(0.971) TCGA-EE-A29E-06 1 202710800 202710800 G A KDM5B Silent p.L880L 0.46 TCGA-EE-A29E-06 1 202910668 202910668 G A ADIPOR1 3'UTR 0.29 TCGA-EE-A29E-06 1 203045547 203045547 T C PPFIA4 3'UTR 0.45 TCGA-EE-A29E-06 1 203134332 203134332 G A ADORA1 Intron 0.30 TCGA-EE-A29E-06 1 203185981 203185981 C T CHIT1 3'UTR 0.45 TCGA-EE-A29E-06 1 203276294 203276294 C T BTG2 Missense_Mutation p.R69C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 203472062 203472062 C T OPTC Silent p.F251F 0.45 TCGA-EE-A29E-06 1 204129755 204129755 C T REN Missense_Mutation p.G142E 0.48 deleterious(0.03) possibly_damaging(0.589) TCGA-EE-A29E-06 1 20440583 20440583 G A PLA2G2D 3'UTR 0.18 TCGA-EE-A29E-06 1 205053191 205053191 G A TMEM81 Silent p.I86I 0.35 TCGA-EE-A29E-06 1 205241102 205241102 C T TMCC2 Silent p.F660F 0.33 TCGA-EE-A29E-06 1 205884363 205884363 G A SLC26A9 Intron 0.43 TCGA-EE-A29E-06 1 206319184 206319184 G A CTSE Nonsense_Mutation p.W103* 0.35 TCGA-EE-A29E-06 1 206652286 206652286 G A IKBKE Silent p.T331T 0.32 TCGA-EE-A29E-06 1 207095270 207095270 G A FAIM3 5'UTR 0.30 TCGA-EE-A29E-06 1 207195954 207195954 G A C1orf116 Silent p.S385S 0.50 TCGA-EE-A29E-06 1 207300223 207300223 C T C4BPA Missense_Mutation p.P291L 0.33 tolerated(0.38) benign(0.291) TCGA-EE-A29E-06 1 207653369 207653369 C T CR2 Silent p.T1053T 0.28 TCGA-EE-A29E-06 1 207680090 207680090 G A CR1 Silent p.V111V 0.47 TCGA-EE-A29E-06 1 207793385 207793385 C T CR1 Silent p.D2409D 0.46 TCGA-EE-A29E-06 1 207851615 207851615 C T CR1L Missense_Mutation p.S117F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 20972134 20972134 G T PINK1 Silent p.L347L 0.57 TCGA-EE-A29E-06 1 209974688 209974688 G A IRF6 Missense_Mutation p.P24L 0.40 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 1 21031383 21031383 C T KIF17 Missense_Mutation p.G227D 0.60 deleterious(0.01) benign(0.4) TCGA-EE-A29E-06 1 210415401 210415401 G A SERTAD4 Missense_Mutation p.E264K 0.17 deleterious(0.02) possibly_damaging(0.664) TCGA-EE-A29E-06 1 212216443 212216443 G A DTL Missense_Mutation p.G54E 0.30 deleterious(0) probably_damaging(0.96) TCGA-EE-A29E-06 1 212799806 212799806 C T FAM71A Silent p.F529F 0.29 TCGA-EE-A29E-06 1 213147235 213147235 G A VASH2 Intron 0.56 TCGA-EE-A29E-06 1 21329214 21329214 G A EIF4G3 Missense_Mutation p.R8C 0.46 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 1 214705895 214705895 G A PTPN14 Intron 0.17 TCGA-EE-A29E-06 1 214816472 214816472 C T CENPF Silent p.C1597C 0.29 TCGA-EE-A29E-06 1 215751065 215751065 C T KCTD3 Missense_Mutation p.P104S 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 1 215844436 215844436 C T USH2A Missense_Mutation p.E4671K 0.31 possibly_damaging(0.844) TCGA-EE-A29E-06 1 215844527 215844527 C T USH2A Silent p.L4640L 0.54 TCGA-EE-A29E-06 1 215848027 215848027 G A USH2A Missense_Mutation p.S4409F 0.28 probably_damaging(0.949) TCGA-EE-A29E-06 1 215848409 215848409 G A USH2A Silent p.L4282L 0.35 TCGA-EE-A29E-06 1 215848679 215848679 G A USH2A Missense_Mutation p.R4192C 0.47 probably_damaging(0.977) TCGA-EE-A29E-06 1 215901522 215901522 C T USH2A Nonsense_Mutation p.W3972* 0.31 TCGA-EE-A29E-06 1 215972345 215972345 C T USH2A Missense_Mutation p.D3288N 0.60 benign(0.32) TCGA-EE-A29E-06 1 21807446 21807446 G A NBPF3 Missense_Mutation p.E469K 0.13 tolerated(0.16) possibly_damaging(0.896) TCGA-EE-A29E-06 1 218504303 218504303 C T RRP15 Missense_Mutation p.S240L 0.31 deleterious(0.01) benign(0.021) TCGA-EE-A29E-06 1 220091919 220091919 G A SLC30A10 Intron 0.60 TCGA-EE-A29E-06 1 22207321 22207321 G A HSPG2 Missense_Mutation p.S609F 0.31 probably_damaging(0.989) TCGA-EE-A29E-06 1 222802619 222802619 C T MIA3 Missense_Mutation p.S686F 0.32 deleterious(0.02) benign(0.103) TCGA-EE-A29E-06 1 222802620 222802620 C T MIA3 Silent p.S686S 0.32 TCGA-EE-A29E-06 1 22303555 22303555 C T CELA3B Missense_Mutation p.S8F 0.51 tolerated(0.34) benign(0) TCGA-EE-A29E-06 1 223284970 223284970 G A TLR5 Silent p.T468T 0.46 TCGA-EE-A29E-06 1 223286250 223286250 G A TLR5 Missense_Mutation p.P42S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 223465797 223465797 G A SUSD4 Silent p.S115S 0.32 TCGA-EE-A29E-06 1 223568241 223568241 G A C1orf65 Missense_Mutation p.R475K 0.39 tolerated(0.68) benign(0.018) TCGA-EE-A29E-06 1 223568531 223568531 G A C1orf65 Missense_Mutation p.V572M 0.34 tolerated(1) benign(0.006) TCGA-EE-A29E-06 1 224009059 224009059 G A TP53BP2 Missense_Mutation p.T13I 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 1 226075259 226075259 G A LEFTY1 Missense_Mutation p.P193S 0.52 deleterious(0.04) possibly_damaging(0.651) TCGA-EE-A29E-06 1 226128894 226128894 G A LEFTY2 5'UTR 0.44 TCGA-EE-A29E-06 1 226555974 226555974 G A PARP1 Missense_Mutation p.R735C 0.39 deleterious(0) probably_damaging(0.961) TCGA-EE-A29E-06 1 226924433 226924433 G A ITPKB Missense_Mutation p.P243S 0.48 tolerated_low_confidence(0.28) benign(0.004) TCGA-EE-A29E-06 1 227182600 227182600 G A CDC42BPA Missense_Mutation p.S1651F 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29E-06 1 228238550 228238550 C T WNT3A Silent p.F169F 0.62 TCGA-EE-A29E-06 1 228482023 228482023 G A OBSCN Missense_Mutation p.E4197K 0.32 probably_damaging(0.996) TCGA-EE-A29E-06 1 228582509 228582509 G A TRIM11 Missense_Mutation p.S435L 0.24 tolerated(0.06) possibly_damaging(0.493) TCGA-EE-A29E-06 1 230839076 230839076 C T AGT Splice_Site p.X424_splice 0.49 TCGA-EE-A29E-06 1 230841680 230841680 G A AGT Missense_Mutation p.R375W 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 230979283 230979283 G A C1orf198 Silent p.L248L 0.59 TCGA-EE-A29E-06 1 231374694 231374694 G A C1orf131 Missense_Mutation p.S120F 0.63 deleterious(0.01) possibly_damaging(0.847) TCGA-EE-A29E-06 1 23232533 23232533 G A EPHB2 Missense_Mutation p.E608K 0.43 deleterious(0.04) probably_damaging(0.957) TCGA-EE-A29E-06 1 232650684 232650684 G A SIPA1L2 Silent p.F134F 0.36 TCGA-EE-A29E-06 1 233394784 233394784 G A PCNXL2 Missense_Mutation p.P275L 0.26 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-EE-A29E-06 1 233398892 233398892 C T PCNXL2 Silent p.A57A 0.30 TCGA-EE-A29E-06 1 233515107 233515107 G A MLK4 Silent p.G785G 0.29 TCGA-EE-A29E-06 1 234569190 234569190 G A TARBP1 Missense_Mutation p.S787F 0.56 deleterious(0) probably_damaging(0.935) TCGA-EE-A29E-06 1 236189432 236189432 G A NID1 Missense_Mutation p.S583F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 23688494 23688494 G A ZNF436 Missense_Mutation p.L461F 0.42 tolerated(0.12) probably_damaging(0.926) TCGA-EE-A29E-06 1 236898975 236898975 G A ACTN2 Missense_Mutation p.M246I 0.40 tolerated(0.35) probably_damaging(0.993) TCGA-EE-A29E-06 1 237632407 237632407 G A RYR2 Missense_Mutation p.G543E 0.43 possibly_damaging(0.83) TCGA-EE-A29E-06 1 23763535 23763535 G A ASAP3 Missense_Mutation p.P449S 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 237875071 237875071 C T RYR2 Silent p.F3419F 0.52 TCGA-EE-A29E-06 1 237947370 237947370 G A RYR2 Missense_Mutation p.E4120K 0.21 possibly_damaging(0.827) TCGA-EE-A29E-06 1 237995995 237995995 C T RYR2 3'UTR 0.62 TCGA-EE-A29E-06 1 240071117 240071117 G A CHRM3 Missense_Mutation p.M122I 0.52 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 1 240371804 240371804 G A FMN2 Missense_Mutation p.G1231E 0.38 benign(0.072) TCGA-EE-A29E-06 1 240601478 240601478 G A FMN2 Nonsense_Mutation p.W1676* 0.47 TCGA-EE-A29E-06 1 240969562 240969562 C T RGS7 Missense_Mutation p.E383K 0.60 tolerated(0.08) probably_damaging(0.99) TCGA-EE-A29E-06 1 241261968 241261968 G A RGS7 Missense_Mutation p.S58F 0.30 deleterious(0) benign(0.401) TCGA-EE-A29E-06 1 241753371 241753371 C T KMO Missense_Mutation p.L386F 0.53 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29E-06 1 241761205 241761205 G A OPN3 Missense_Mutation p.T263I 0.30 tolerated(0.19) benign(0.005) TCGA-EE-A29E-06 1 241797474 241797474 G A CHML Missense_Mutation p.P532L 0.23 tolerated(0.34) benign(0.086) TCGA-EE-A29E-06 1 24201874 24201874 C T CNR2 Silent p.G78G 0.44 TCGA-EE-A29E-06 1 242428750 242428750 C T PLD5 Missense_Mutation p.G166S 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 1 2428416 2428416 C T PLCH2 Missense_Mutation p.P668S 0.40 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 1 2428417 2428417 C T PLCH2 Missense_Mutation p.P668L 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 1 244218166 244218166 C T ZBTB18 Silent p.L364L 0.24 TCGA-EE-A29E-06 1 24448024 24448024 G A IL22RA1 Silent p.I332I 0.62 TCGA-EE-A29E-06 1 2450650 2450650 C T PANK4 Missense_Mutation p.G323S 0.46 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A29E-06 1 24507323 24507323 G A IFNLR1 Missense_Mutation p.P27L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 245847663 245847663 C T KIF26B Missense_Mutation p.S796L 0.44 deleterious(0) unknown(0) TCGA-EE-A29E-06 1 246714589 246714589 G A TFB2M Missense_Mutation p.P241S 0.35 deleterious(0) probably_damaging(0.992) TCGA-EE-A29E-06 1 247063402 247063402 G A AHCTF1 Missense_Mutation p.P475L 0.37 tolerated(0.11) probably_damaging(0.993) TCGA-EE-A29E-06 1 247655249 247655249 C T OR2W5 RNA 0.51 TCGA-EE-A29E-06 1 247695727 247695727 G A OR2C3 Silent p.F29F 0.53 TCGA-EE-A29E-06 1 247751856 247751856 C T OR2G2 Silent p.F65F 0.51 TCGA-EE-A29E-06 1 247751937 247751937 G A OR2G2 Missense_Mutation p.M92I 0.48 deleterious(0.01) benign(0.04) TCGA-EE-A29E-06 1 247751993 247751993 G A OR2G2 Missense_Mutation p.G111E 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 247752441 247752441 C T OR2G2 Silent p.F260F 0.56 TCGA-EE-A29E-06 1 247768910 247768910 C T OR2G3 Missense_Mutation p.S8F 0.30 tolerated(0.26) benign(0.014) TCGA-EE-A29E-06 1 247768917 247768917 G A OR2G3 Missense_Mutation p.M10I 0.32 tolerated(0.16) benign(0) TCGA-EE-A29E-06 1 247769053 247769053 C T OR2G3 Missense_Mutation p.H56Y 0.52 deleterious(0.01) possibly_damaging(0.582) TCGA-EE-A29E-06 1 247769715 247769715 C T OR2G3 Silent p.L276L 0.46 TCGA-EE-A29E-06 1 247835855 247835855 C T OR13G1 Silent p.L163L 0.51 TCGA-EE-A29E-06 1 247836113 247836113 C T OR13G1 Silent p.K77K 0.24 TCGA-EE-A29E-06 1 247875599 247875599 G A OR6F1 Silent p.F153F 0.61 TCGA-EE-A29E-06 1 247902189 247902189 C T OR14K1 Silent p.S91S 0.27 TCGA-EE-A29E-06 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.31 deleterious(0.04) benign(0.335) TCGA-EE-A29E-06 1 248039444 248039444 G A TRIM58 Missense_Mutation p.E372K 0.48 tolerated(0.28) benign(0.348) TCGA-EE-A29E-06 1 248201644 248201644 C T OR2L2 Silent p.F25F 0.36 TCGA-EE-A29E-06 1 248309187 248309187 G A OR2M5 Missense_Mutation p.M246I 0.28 tolerated(0.34) benign(0.005) TCGA-EE-A29E-06 1 248366915 248366916 - T OR2M3 Frame_Shift_Ins p.S183Ffs*9 0.18 TCGA-EE-A29E-06 1 248436457 248436457 G A OR2T33 Silent p.L220L 0.43 TCGA-EE-A29E-06 1 248458170 248458170 G A OR2T12 Silent p.A237A 0.40 TCGA-EE-A29E-06 1 248458513 248458513 G A OR2T12 Missense_Mutation p.A123V 0.51 deleterious(0) possibly_damaging(0.899) TCGA-EE-A29E-06 1 248512712 248512712 C T OR14C36 Silent p.I212I 0.56 TCGA-EE-A29E-06 1 248551788 248551788 G A OR2T6 Silent p.R293R 0.30 TCGA-EE-A29E-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.24 TCGA-EE-A29E-06 1 248616506 248616506 C T OR2T2 Silent p.L136L 0.34 TCGA-EE-A29E-06 1 248617007 248617007 G A OR2T2 Silent p.R303R 0.22 TCGA-EE-A29E-06 1 248652040 248652040 C T OR2T5 Missense_Mutation p.L51F 0.13 tolerated(0.37) benign(0.033) TCGA-EE-A29E-06 1 248737485 248737485 G A OR2T34 Missense_Mutation p.L192F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 248737902 248737902 G A OR2T34 Missense_Mutation p.L53F 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A29E-06 1 248756281 248756281 G A OR2T10 Silent p.S263S 0.30 TCGA-EE-A29E-06 1 248756989 248756989 G A OR2T10 Silent p.L27L 0.48 TCGA-EE-A29E-06 1 248790028 248790028 G A OR2T11 Silent p.N134N 0.48 TCGA-EE-A29E-06 1 248813789 248813789 G A OR2T27 Missense_Mutation p.P133S 0.31 tolerated(0.2) benign(0.126) TCGA-EE-A29E-06 1 248814048 248814048 G A OR2T27 Silent p.I46I 0.19 TCGA-EE-A29E-06 1 24932124 24932124 G A NCMAP Silent p.E65E 0.24 TCGA-EE-A29E-06 1 26514758 26514758 G A CNKSR1 Silent p.K496K 0.40 TCGA-EE-A29E-06 1 27240438 27240438 G A NR0B2 5'UTR 0.42 TCGA-EE-A29E-06 1 27874737 27874737 G A AHDC1 Missense_Mutation p.P1297L 0.31 tolerated(0.07) possibly_damaging(0.851) TCGA-EE-A29E-06 1 27878223 27878223 G A AHDC1 Missense_Mutation p.S135F 0.37 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A29E-06 1 29069408 29069408 C T YTHDF2 Missense_Mutation p.S209F 0.43 deleterious(0) probably_damaging(0.984) TCGA-EE-A29E-06 1 29520672 29520672 G A MECR Silent p.I328I 0.34 TCGA-EE-A29E-06 1 31346183 31346183 A C SDC3 Missense_Mutation p.F402V 0.25 deleterious(0) benign(0.126) TCGA-EE-A29E-06 1 31426706 31426706 G A PUM1 Missense_Mutation p.R816C 0.49 deleterious(0) probably_damaging(0.943) TCGA-EE-A29E-06 1 32089222 32089222 G A HCRTR1 Silent p.R279R 0.50 TCGA-EE-A29E-06 1 32193118 32193118 G A BAI2 Missense_Mutation p.S1554L 0.36 tolerated(0.13) benign(0.036) TCGA-EE-A29E-06 1 32256710 32256710 G A SPOCD1 Nonsense_Mutation p.Q1049* 0.33 TCGA-EE-A29E-06 1 32694346 32694346 C T EIF3I Missense_Mutation p.L220F 0.44 tolerated(0.12) benign(0.269) TCGA-EE-A29E-06 1 3328229 3328229 C T PRDM16 Missense_Mutation p.P490S 0.46 tolerated(0.19) probably_damaging(0.971) TCGA-EE-A29E-06 1 33333848 33333848 C T FNDC5 Missense_Mutation p.E43K 0.40 tolerated(0.59) possibly_damaging(0.453) TCGA-EE-A29E-06 1 3350461 3350461 C T PRDM16 3'UTR 0.62 TCGA-EE-A29E-06 1 3395104 3395104 A C ARHGEF16 Missense_Mutation p.H581P 0.38 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29E-06 1 3395108 3395108 C T ARHGEF16 Silent p.P582P 0.35 TCGA-EE-A29E-06 1 33960249 33960249 C T ZSCAN20 Missense_Mutation p.L769F 0.33 tolerated(0.71) benign(0.119) TCGA-EE-A29E-06 1 34102127 34102127 G A CSMD2 Missense_Mutation p.P1561L 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29E-06 1 34191066 34191066 C T CSMD2 Missense_Mutation p.G820E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 34238206 34238206 T A CSMD2 Missense_Mutation p.N564Y 0.39 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A29E-06 1 34276439 34276439 C T CSMD2 Missense_Mutation p.G411S 0.37 deleterious(0.04) probably_damaging(1) TCGA-EE-A29E-06 1 34330140 34330140 G A HMGB4 Silent p.P116P 0.53 TCGA-EE-A29E-06 1 34684454 34684454 G A C1orf94 3'UTR 0.42 TCGA-EE-A29E-06 1 35250684 35250684 G A GJB3 Silent p.Q107Q 0.33 TCGA-EE-A29E-06 1 35577700 35577700 C T ZMYM1 Missense_Mutation p.S372L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-EE-A29E-06 1 35881164 35881164 C T ZMYM4 Silent p.F1386F 0.47 TCGA-EE-A29E-06 1 36226355 36226355 G A CLSPN Silent p.I389I 0.32 TCGA-EE-A29E-06 1 3638758 3638758 G A TP73 Silent p.R201R 0.15 TCGA-EE-A29E-06 1 3669014 3669014 G A CCDC27 5'UTR 0.42 TCGA-EE-A29E-06 1 3670774 3670774 C T CCDC27 Silent p.F137F 0.34 TCGA-EE-A29E-06 1 37267565 37267565 G A GRIK3 Missense_Mutation p.P883S 0.48 deleterious(0.02) benign(0.06) TCGA-EE-A29E-06 1 37315934 37315934 G A GRIK3 Missense_Mutation p.S435L 0.41 deleterious(0.01) benign(0.173) TCGA-EE-A29E-06 1 37335351 37335351 G A GRIK3 Silent p.L262L 0.37 TCGA-EE-A29E-06 1 37356632 37356632 G A GRIK3 Nonsense_Mutation p.R61* 0.39 TCGA-EE-A29E-06 1 38006000 38006000 A T SNIP1 Silent p.L228L 0.32 TCGA-EE-A29E-06 1 39818804 39818804 G A MACF1 Silent p.S1713S 0.34 TCGA-EE-A29E-06 1 39818805 39818805 G A MACF1 Missense_Mutation p.G1714R 0.33 benign(0.007) TCGA-EE-A29E-06 1 40557021 40557021 G A PPT1 Missense_Mutation p.S138L 0.56 deleterious(0) probably_damaging(0.94) TCGA-EE-A29E-06 1 40688281 40688281 C T RLF Silent p.I282I 0.43 TCGA-EE-A29E-06 1 40758126 40758126 T A ZMPSTE24 Missense_Mutation p.F405I 0.35 deleterious(0.01) possibly_damaging(0.449) TCGA-EE-A29E-06 1 40928601 40928601 C T ZFP69B Silent p.A315A 0.46 TCGA-EE-A29E-06 1 41285908 41285908 G A KCNQ4 Silent p.R339R 0.54 TCGA-EE-A29E-06 1 41579008 41579008 G A SCMH1 Missense_Mutation p.P221L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 43011224 43011224 C T CCDC30 Silent p.S133S 0.40 TCGA-EE-A29E-06 1 43166585 43166585 C T YBX1 Missense_Mutation p.P292S 0.15 tolerated(0.11) benign(0.087) TCGA-EE-A29E-06 1 43201639 43201639 C T CLDN19 Missense_Mutation p.G179D 0.88 deleterious(0) probably_damaging(0.965) TCGA-EE-A29E-06 1 43675704 43675704 C T WDR65 Silent p.I682I 0.31 TCGA-EE-A29E-06 1 43749027 43749027 C T C1orf210 5'UTR 0.36 TCGA-EE-A29E-06 1 43786945 43786945 C T TIE1 Missense_Mutation p.S1038F 0.45 deleterious(0) probably_damaging(0.979) TCGA-EE-A29E-06 1 43788467 43788467 C T TIE1 3'UTR 0.45 TCGA-EE-A29E-06 1 43903468 43903468 C T SZT2 Missense_Mutation p.R2078C 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29E-06 1 44069177 44069177 C T PTPRF Missense_Mutation p.P811S 0.27 tolerated(0.1) benign(0.103) TCGA-EE-A29E-06 1 44595031 44595031 G A KLF17 Missense_Mutation p.E30K 0.42 tolerated(0.08) benign(0.019) TCGA-EE-A29E-06 1 45250386 45250386 C T BEST4 Missense_Mutation p.E355K 0.45 tolerated(0.09) benign(0.004) TCGA-EE-A29E-06 1 45474132 45474132 G A HECTD3 Intron 0.40 TCGA-EE-A29E-06 1 45553706 45553706 G A ZSWIM5 Missense_Mutation p.P267S 0.43 deleterious(0) unknown(0) TCGA-EE-A29E-06 1 45798461 45798461 G A MUTYH Missense_Mutation p.R181W 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 45798462 45798462 G A MUTYH Silent p.G180G 0.31 TCGA-EE-A29E-06 1 46033647 46033647 C T AKR1A1 Intron 0.50 TCGA-EE-A29E-06 1 46656202 46656202 G A POMGNT1 Intron 0.39 TCGA-EE-A29E-06 1 46976938 46976938 G A DMBX1 Missense_Mutation p.R222K 0.46 deleterious(0.03) benign(0.209) TCGA-EE-A29E-06 1 46977753 46977753 G A DMBX1 Missense_Mutation p.G241R 0.43 tolerated_low_confidence(0.05) possibly_damaging(0.447) TCGA-EE-A29E-06 1 47078949 47078949 G A MOB3C Silent p.F67F 0.35 TCGA-EE-A29E-06 1 47131012 47131012 G A ATPAF1 Silent p.S120S 0.44 TCGA-EE-A29E-06 1 47395747 47395747 G A CYP4A11 3'UTR 0.36 TCGA-EE-A29E-06 1 47515671 47515671 G A CYP4X1 Splice_Site p.X452_splice 0.37 TCGA-EE-A29E-06 1 47685395 47685395 C T TAL1 Silent p.R331R 0.47 TCGA-EE-A29E-06 1 48877184 48877184 G A SPATA6 Silent p.H119H 0.39 TCGA-EE-A29E-06 1 51767299 51767299 C T TTC39A Nonsense_Mutation p.W337* 0.44 TCGA-EE-A29E-06 1 53558447 53558447 G A SLC1A7 Silent p.F270F 0.40 TCGA-EE-A29E-06 1 53736906 53736906 G A LRP8 Silent p.T373T 0.31 TCGA-EE-A29E-06 1 53980412 53980412 G A GLIS1 Missense_Mutation p.S415L 0.42 tolerated(0.11) benign(0.105) TCGA-EE-A29E-06 1 54060297 54060297 G A GLIS1 Silent p.S93S 0.16 TCGA-EE-A29E-06 1 54640385 54640385 G A CYB5RL Silent p.F285F 0.43 TCGA-EE-A29E-06 1 54644876 54644876 G A CYB5RL Silent p.F230F 0.50 TCGA-EE-A29E-06 1 57411647 57411647 G A C8B Missense_Mutation p.L318F 0.39 tolerated(0.3) benign(0.159) TCGA-EE-A29E-06 1 57422537 57422537 G A C8B Missense_Mutation p.P99L 0.47 tolerated(0.16) benign(0.078) TCGA-EE-A29E-06 1 57535040 57535040 A T DAB1 Missense_Mutation p.I219N 0.40 tolerated(0.09) possibly_damaging(0.736) TCGA-EE-A29E-06 1 57611028 57611028 C T DAB1 Missense_Mutation p.G48R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 60377397 60377397 G A CYP2J2 Silent p.S189S 0.41 TCGA-EE-A29E-06 1 6158641 6158641 C T KCNAB2 3'UTR 0.20 TCGA-EE-A29E-06 1 6158656 6158656 G A KCNAB2 3'UTR 0.29 TCGA-EE-A29E-06 1 6158657 6158657 G A KCNAB2 3'UTR 0.29 TCGA-EE-A29E-06 1 6184111 6184111 C T CHD5 Silent p.E1532E 0.53 TCGA-EE-A29E-06 1 62263076 62263076 C T INADL Missense_Mutation p.P460S 0.41 tolerated(0.58) benign(0.002) TCGA-EE-A29E-06 1 6228297 6228297 G A CHD5 Silent p.F40F 0.37 TCGA-EE-A29E-06 1 62582853 62582853 C T INADL Missense_Mutation p.S1618F 0.40 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A29E-06 1 62672548 62672548 G A L1TD1 Missense_Mutation p.G83E 0.33 tolerated(0.13) unknown(0) TCGA-EE-A29E-06 1 62740337 62740337 C T KANK4 Missense_Mutation p.D147N 0.27 tolerated(0.16) benign(0.003) TCGA-EE-A29E-06 1 64643921 64643921 C T ROR1 Missense_Mutation p.P733S 0.45 deleterious(0.03) probably_damaging(0.909) TCGA-EE-A29E-06 1 65272917 65272917 G A RAVER2 Silent p.T467T 0.39 TCGA-EE-A29E-06 1 65273010 65273010 G A RAVER2 Silent p.Q498Q 0.37 TCGA-EE-A29E-06 1 67099765 67099765 G A SGIP1 Intron 0.54 TCGA-EE-A29E-06 1 67394631 67394631 C T MIER1 Intron 0.67 TCGA-EE-A29E-06 1 67878897 67878897 A G SERBP1 Missense_Mutation p.L407P 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 68603577 68603577 G A WLS Nonsense_Mutation p.Q466* 0.47 TCGA-EE-A29E-06 1 68659606 68659606 G A WLS Intron 0.41 TCGA-EE-A29E-06 1 68944952 68944952 G A DEPDC1 Missense_Mutation p.L663F 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 70226019 70226019 C T LRRC7 Silent p.F44F 0.37 TCGA-EE-A29E-06 1 70291500 70291500 C T LRRC7 Missense_Mutation p.P126L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 70504756 70504756 A T LRRC7 Missense_Mutation p.E1045D 0.36 tolerated(0.7) benign(0.003) TCGA-EE-A29E-06 1 71437372 71437372 G A PTGER3 Intron 0.34 TCGA-EE-A29E-06 1 71873224 71873224 C T NEGR1 Missense_Mutation p.G324R 0.26 deleterious(0.03) benign(0.016) TCGA-EE-A29E-06 1 74506908 74506908 C T LRRIQ3 Missense_Mutation p.M569I 0.28 tolerated(0.18) benign(0.004) TCGA-EE-A29E-06 1 74575123 74575123 G A LRRIQ3 Silent p.F274F 0.33 TCGA-EE-A29E-06 1 75038101 75038101 A T C1orf173 Missense_Mutation p.L1098H 0.41 tolerated(0.48) benign(0.004) TCGA-EE-A29E-06 1 75038102 75038102 G A C1orf173 Missense_Mutation p.L1098F 0.43 tolerated(1) benign(0.002) TCGA-EE-A29E-06 1 75055523 75055523 G A C1orf173 Silent p.T656T 0.39 TCGA-EE-A29E-06 1 75055612 75055612 C T C1orf173 Missense_Mutation p.D627N 0.36 deleterious(0.03) benign(0.056) TCGA-EE-A29E-06 1 76378490 76378490 G A MSH4 Missense_Mutation p.R910Q 0.47 tolerated(0.06) benign(0.048) TCGA-EE-A29E-06 1 76384686 76384686 G A ASB17 Missense_Mutation p.S280L 0.32 tolerated(0.13) possibly_damaging(0.849) TCGA-EE-A29E-06 1 7723465 7723465 C T CAMTA1 Silent p.I286I 0.39 TCGA-EE-A29E-06 1 7723467 7723467 C T CAMTA1 Missense_Mutation p.S287L 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 1 7724911 7724911 C T CAMTA1 Silent p.S768S 0.35 TCGA-EE-A29E-06 1 77806190 77806190 G A AK5 Missense_Mutation p.M276I 0.40 tolerated(0.17) benign(0.003) TCGA-EE-A29E-06 1 78309083 78309083 C T FAM73A Silent p.S329S 0.50 TCGA-EE-A29E-06 1 78395031 78395031 G A NEXN Missense_Mutation p.A299T 0.26 tolerated(0.53) benign(0.008) TCGA-EE-A29E-06 1 79357337 79357337 C T ELTD1 Missense_Mutation p.G628S 0.30 tolerated(0.06) probably_damaging(1) TCGA-EE-A29E-06 1 82417794 82417794 G A LPHN2 Missense_Mutation p.E584K 0.47 tolerated(0.29) benign(0.281) TCGA-EE-A29E-06 1 82433841 82433841 C T LPHN2 Silent p.H810H 0.45 TCGA-EE-A29E-06 1 8418851 8418851 G A RERE Silent p.P1248P 0.48 TCGA-EE-A29E-06 1 8418852 8418852 G A RERE Missense_Mutation p.P1248L 0.50 unknown(0) TCGA-EE-A29E-06 1 85403518 85403518 G A MCOLN2 Missense_Mutation p.R419W 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 86315041 86315041 T A COL24A1 Nonsense_Mutation p.K1117* 0.38 TCGA-EE-A29E-06 1 86557978 86557978 G A COL24A1 Missense_Mutation p.S542F 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 865644 865644 G A SAMD11 Missense_Mutation p.S61N 0.46 deleterious(0.02) benign(0.02) TCGA-EE-A29E-06 1 86590795 86590795 G A COL24A1 Silent p.L408L 0.44 TCGA-EE-A29E-06 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.40 TCGA-EE-A29E-06 1 87040296 87040296 G A CLCA4 Missense_Mutation p.G514E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 87040390 87040390 G A CLCA4 Silent p.V545V 0.28 TCGA-EE-A29E-06 1 87041210 87041210 G A CLCA4 Missense_Mutation p.A627T 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A29E-06 1 87045066 87045066 G A CLCA4 Missense_Mutation p.E718K 0.39 tolerated(0.18) benign(0.049) TCGA-EE-A29E-06 1 87045722 87045722 G A CLCA4 Silent p.K818K 0.46 TCGA-EE-A29E-06 1 87101645 87101645 G T RP4-651E10.4 Intron 0.40 TCGA-EE-A29E-06 1 874805 874805 C T SAMD11 Missense_Mutation p.P224L 0.39 tolerated(0.66) benign(0.001) TCGA-EE-A29E-06 1 888657 888657 G A NOC2L Silent p.I300I 0.38 TCGA-EE-A29E-06 1 89290058 89290058 T A PKN2 Missense_Mutation p.L803H 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 1 89480310 89480310 G A GBP3 Silent p.F116F 0.45 TCGA-EE-A29E-06 1 89889905 89889905 G A GBP1P1 RNA 0.37 TCGA-EE-A29E-06 1 9107682 9107682 C T SLC2A5 Silent p.V135V 0.28 TCGA-EE-A29E-06 1 92979374 92979374 G A EVI5 Missense_Mutation p.P758S 0.45 tolerated_low_confidence(0.4) benign(0.002) TCGA-EE-A29E-06 1 9305602 9305602 C T H6PD Silent p.D203D 0.25 TCGA-EE-A29E-06 1 93202034 93202034 G A EVI5 Missense_Mutation p.P68S 0.44 tolerated(0.13) possibly_damaging(0.68) TCGA-EE-A29E-06 1 9324222 9324222 C T H6PD Missense_Mutation p.S557F 0.46 deleterious(0) possibly_damaging(0.563) TCGA-EE-A29E-06 1 9324975 9324975 C T H6PD 3'UTR 0.64 TCGA-EE-A29E-06 1 93987662 93987662 C T FNBP1L Missense_Mutation p.P55L 0.33 deleterious(0.04) possibly_damaging(0.57) TCGA-EE-A29E-06 1 94514507 94514507 G A ABCA4 Missense_Mutation p.S887L 0.41 tolerated(0.1) benign(0.006) TCGA-EE-A29E-06 1 94577031 94577031 C T ABCA4 Missense_Mutation p.E89K 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 1 94650465 94650465 C T ARHGAP29 Missense_Mutation p.C691Y 0.42 deleterious(0) possibly_damaging(0.613) TCGA-EE-A29E-06 1 95712207 95712207 A T RWDD3 Missense_Mutation p.H228L 0.36 tolerated(0.13) possibly_damaging(0.717) TCGA-EE-A29E-06 1 95712208 95712208 C T RWDD3 Silent p.H228H 0.34 TCGA-EE-A29E-06 1 97770838 97770838 C T DPYD Missense_Mutation p.R759Q 0.39 tolerated(0.15) benign(0.063) TCGA-EE-A29E-06 1 98039398 98039398 C T DPYD Nonsense_Mutation p.W419* 0.47 TCGA-EE-A29E-06 1 981387 981387 C T AGRN Silent p.F908F 0.56 TCGA-EE-A29E-06 1 98144734 98144734 A T DPYD Missense_Mutation p.I256N 0.21 tolerated(0.31) benign(0.001) TCGA-EE-A29E-06 1 9994837 9994837 G A LZIC Missense_Mutation p.R107W 0.39 deleterious(0) probably_damaging(0.941) TCGA-EE-A29E-06 20 10621490 10621490 G A JAG1 Missense_Mutation p.S1047L 0.13 tolerated(0.14) benign(0.038) TCGA-EE-A29E-06 20 13145493 13145493 G A SPTLC3 Silent p.T546T 0.36 TCGA-EE-A29E-06 20 16359499 16359499 G A KIF16B Nonsense_Mutation p.Q1050* 0.60 TCGA-EE-A29E-06 20 18005396 18005396 G C OVOL2 Missense_Mutation p.P238A 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 1961277 1961277 C T PDYN Missense_Mutation p.D153N 0.13 tolerated(0.17) benign(0.006) TCGA-EE-A29E-06 20 1961313 1961313 C T PDYN Missense_Mutation p.A141T 0.62 tolerated(0.56) benign(0.017) TCGA-EE-A29E-06 20 19666004 19666004 C T SLC24A3 Silent p.P441P 0.58 TCGA-EE-A29E-06 20 2293547 2293547 G T TGM3 Nonsense_Mutation p.E182* 0.55 TCGA-EE-A29E-06 20 2293571 2293571 C T TGM3 Missense_Mutation p.L190F 0.56 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 20 2384129 2384129 C T TGM6 Missense_Mutation p.P359L 0.76 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 23858212 23858212 C T CST5 Missense_Mutation p.R92Q 0.11 deleterious(0.04) probably_damaging(0.915) TCGA-EE-A29E-06 20 2413334 2413334 C T TGM6 3'UTR 0.60 TCGA-EE-A29E-06 20 24944346 24944346 G A APMAP 3'UTR 0.62 TCGA-EE-A29E-06 20 2641278 2641278 G A IDH3B Intron 0.14 TCGA-EE-A29E-06 20 29847299 29847299 G A DEFB115 Missense_Mutation p.R44K 0.65 tolerated(0.98) benign(0.139) TCGA-EE-A29E-06 20 30409334 30409334 G A MYLK2 Missense_Mutation p.R189K 0.28 tolerated(0.89) benign(0.009) TCGA-EE-A29E-06 20 30475014 30475014 G A TTLL9 Missense_Mutation p.G29S 0.45 tolerated(0.27) benign(0.007) TCGA-EE-A29E-06 20 30497607 30497607 G A TTLL9 Missense_Mutation p.G129E 0.24 tolerated(0.16) probably_damaging(0.987) TCGA-EE-A29E-06 20 30556335 30556335 C A XKR7 Silent p.P119P 0.41 TCGA-EE-A29E-06 20 30605875 30605875 G A CCM2L Missense_Mutation p.E126K 0.31 deleterious(0) probably_damaging(0.97) TCGA-EE-A29E-06 20 30784537 30784537 G A PLAGL2 Silent p.L403L 0.27 TCGA-EE-A29E-06 20 31016187 31016187 C T ASXL1 Missense_Mutation p.L145F 0.65 tolerated(0.42) possibly_damaging(0.851) TCGA-EE-A29E-06 20 31671359 31671359 G A BPIFB4 Missense_Mutation p.R119Q 0.55 tolerated_low_confidence(0.08) benign(0.004) TCGA-EE-A29E-06 20 3218250 3218250 A T SLC4A11 Intron 0.10 TCGA-EE-A29E-06 20 33345246 33345246 G A NCOA6 Silent p.F435F 0.62 TCGA-EE-A29E-06 20 33345550 33345550 G A NCOA6 Missense_Mutation p.S334F 0.61 benign(0.352) TCGA-EE-A29E-06 20 33567514 33567514 C T MYH7B Silent p.F125F 0.23 TCGA-EE-A29E-06 20 33586397 33586397 G A MYH7B Missense_Mutation p.E1362K 0.29 probably_damaging(0.997) TCGA-EE-A29E-06 20 33586701 33586701 G A MYH7B Silent p.E1433E 0.72 TCGA-EE-A29E-06 20 33879710 33879710 G A FAM83C Missense_Mutation p.P133L 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 20 34218677 34218677 G A CPNE1 Missense_Mutation p.P351S 0.24 deleterious(0) probably_damaging(0.936) TCGA-EE-A29E-06 20 34832831 34832831 C T AAR2 Missense_Mutation p.L324F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 20 35506362 35506362 G A TLDC2 Missense_Mutation p.E32K 0.32 tolerated(0.39) benign(0.003) TCGA-EE-A29E-06 20 35738689 35738689 G A MROH8 Missense_Mutation p.P989S 0.64 tolerated(0.9) benign(0.033) TCGA-EE-A29E-06 20 35738759 35738759 C T MROH8 Splice_Site p.X965_splice 0.64 TCGA-EE-A29E-06 20 3650192 3650192 C T ADAM33 Splice_Site p.X778_splice 0.53 TCGA-EE-A29E-06 20 36766714 36766714 C T TGM2 Silent p.G472G 0.66 TCGA-EE-A29E-06 20 3683869 3683869 C T SIGLEC1 Silent p.S401S 0.50 TCGA-EE-A29E-06 20 37187061 37187061 T A RALGAPB Missense_Mutation p.F1166I 0.23 tolerated(0.06) benign(0.093) TCGA-EE-A29E-06 20 37534638 37534638 C T PPP1R16B Silent p.Y241Y 0.66 TCGA-EE-A29E-06 20 37534639 37534639 C T PPP1R16B Silent p.L242L 0.65 TCGA-EE-A29E-06 20 39721132 39721132 C T TOP1 Missense_Mutation p.P212L 0.73 tolerated(0.18) benign(0.1) TCGA-EE-A29E-06 20 39793702 39793702 C T PLCG1 Silent p.L449L 0.51 TCGA-EE-A29E-06 20 40080653 40080653 C T CHD6 Nonsense_Mutation p.W1112* 0.17 TCGA-EE-A29E-06 20 40827881 40827881 G A PTPRT Silent p.F830F 0.25 TCGA-EE-A29E-06 20 42198101 42198101 C T SGK2 Missense_Mutation p.S162F 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 42635366 42635366 C T TOX2 Silent p.L115L 0.59 TCGA-EE-A29E-06 20 42693416 42693416 G A TOX2 Splice_Site p.X294_splice 0.65 TCGA-EE-A29E-06 20 42789047 42789047 C T JPH2 Missense_Mutation p.G127E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 43034831 43034831 C T HNF4A Silent p.F83F 0.66 TCGA-EE-A29E-06 20 43142583 43142583 G A SERINC3 Silent p.L46L 0.20 TCGA-EE-A29E-06 20 43851300 43851300 G A SEMG2 Missense_Mutation p.E343K 0.64 tolerated(0.17) possibly_damaging(0.551) TCGA-EE-A29E-06 20 44098461 44098461 C T WFDC2 Missense_Mutation p.L14F 0.61 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A29E-06 20 44237334 44237334 C T WFDC9 Nonsense_Mutation p.W69* 0.18 TCGA-EE-A29E-06 20 44279216 44279216 C T WFDC11 Nonsense_Mutation p.W8* 0.67 TCGA-EE-A29E-06 20 44334534 44334534 C T WFDC13 Missense_Mutation p.P91L 0.59 tolerated_low_confidence(0.06) benign(0.276) TCGA-EE-A29E-06 20 44403006 44403006 C T WFDC3 3'UTR 0.64 TCGA-EE-A29E-06 20 44685936 44685936 G A SLC12A5 Missense_Mutation p.E1108K 0.21 deleterious(0.05) possibly_damaging(0.77) TCGA-EE-A29E-06 20 45130693 45130693 C T ZNF334 Missense_Mutation p.G429R 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 46281231 46281231 C T NCOA3 Missense_Mutation p.S1343F 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29E-06 20 46281232 46281232 C T NCOA3 Silent p.S1343S 0.23 TCGA-EE-A29E-06 20 46318973 46318973 G A SULF2 Missense_Mutation p.P212S 0.13 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A29E-06 20 47273669 47273669 G A PREX1 Silent p.L678L 0.62 TCGA-EE-A29E-06 20 47633841 47633841 C T ARFGEF2 Silent p.S1457S 0.21 TCGA-EE-A29E-06 20 48098645 48098645 C T KCNB1 Missense_Mutation p.D125N 0.24 tolerated(0.21) probably_damaging(1) TCGA-EE-A29E-06 20 48130849 48130849 G A PTGIS Silent p.L313L 0.22 TCGA-EE-A29E-06 20 48130856 48130856 C T PTGIS Missense_Mutation p.G311E 0.75 tolerated(1) benign(0.011) TCGA-EE-A29E-06 20 48522138 48522138 G A SPATA2 3'UTR 0.21 TCGA-EE-A29E-06 20 48746165 48746165 G A TMEM189-UBE2V1 Silent p.F132F 0.26 TCGA-EE-A29E-06 20 50217703 50217703 C T ATP9A 3'UTR 0.24 TCGA-EE-A29E-06 20 50408154 50408154 T C SALL4 Missense_Mutation p.K290E 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29E-06 20 51871842 51871842 G A TSHZ2 Silent p.G615G 0.64 TCGA-EE-A29E-06 20 51871984 51871984 G A TSHZ2 Missense_Mutation p.E663K 0.16 tolerated(0.33) benign(0.116) TCGA-EE-A29E-06 20 5283203 5283203 G A PROKR2 Missense_Mutation p.P213L 0.12 deleterious(0) possibly_damaging(0.853) TCGA-EE-A29E-06 20 5294603 5294603 G A PROKR2 Missense_Mutation p.S138F 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 20 53205089 53205089 G A DOK5 Missense_Mutation p.G81E 0.57 deleterious(0) possibly_damaging(0.568) TCGA-EE-A29E-06 20 55027236 55027236 T A CASS4 Missense_Mutation p.F335Y 0.30 deleterious(0) possibly_damaging(0.852) TCGA-EE-A29E-06 20 55108307 55108307 C T FAM209B 5'UTR 0.63 TCGA-EE-A29E-06 20 55949902 55949902 C T RAE1 Intron 0.24 TCGA-EE-A29E-06 20 57251363 57251363 C T STX16 3'UTR 0.61 TCGA-EE-A29E-06 20 57766909 57766909 C T ZNF831 Missense_Mutation p.P279S 0.60 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A29E-06 20 57829676 57829677 - T ZNF831 Frame_Shift_Ins p.P1639Sfs*2 0.20 TCGA-EE-A29E-06 20 57899615 57899615 G A EDN3 3'UTR 0.44 TCGA-EE-A29E-06 20 5844123 5844123 G A C20orf196 3'UTR 0.55 TCGA-EE-A29E-06 20 58519433 58519433 C T FAM217B Silent p.F145F 0.28 TCGA-EE-A29E-06 20 58569433 58569433 C T CDH26 Missense_Mutation p.H519Y 0.12 tolerated(0.05) benign(0.324) TCGA-EE-A29E-06 20 5919179 5919179 G A TRMT6 3'UTR 0.10 TCGA-EE-A29E-06 20 60419799 60419799 G A CDH4 Missense_Mutation p.E218K 0.24 deleterious(0.02) benign(0.3) TCGA-EE-A29E-06 20 60888162 60888162 G A LAMA5 Silent p.L2979L 0.33 TCGA-EE-A29E-06 20 60890244 60890244 G A LAMA5 Silent p.I2629I 0.28 TCGA-EE-A29E-06 20 61463533 61463533 G A COL9A3 Missense_Mutation p.G439R 0.64 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 20 61542308 61542308 G A DIDO1 Silent p.P219P 0.24 TCGA-EE-A29E-06 20 61833777 61833777 G A YTHDF1 Silent p.S505S 0.21 TCGA-EE-A29E-06 20 61950913 61950913 G A COL20A1 Missense_Mutation p.E961K 0.73 deleterious(0.01) possibly_damaging(0.67) TCGA-EE-A29E-06 20 62187726 62187726 C T C20orf195 Missense_Mutation p.S237L 0.29 tolerated(0.71) benign(0) TCGA-EE-A29E-06 20 62187896 62187896 G A C20orf195 Missense_Mutation p.E294K 0.32 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A29E-06 20 62196571 62196571 G A HELZ2 Silent p.L1202L 0.59 TCGA-EE-A29E-06 20 62199768 62199768 G A HELZ2 Missense_Mutation p.S558F 0.59 deleterious(0) probably_damaging(0.917) TCGA-EE-A29E-06 20 62223911 62223911 G A GMEB2 Silent p.V268V 0.65 TCGA-EE-A29E-06 20 62275187 62275187 G A STMN3 Silent p.L71L 0.68 TCGA-EE-A29E-06 20 62614414 62614414 C T PRPF6 Missense_Mutation p.T29I 0.22 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 20 62839344 62839344 G A MYT1 Silent p.E265E 0.60 TCGA-EE-A29E-06 20 62843415 62843415 G A MYT1 Missense_Mutation p.E481K 0.62 probably_damaging(0.995) TCGA-EE-A29E-06 20 8639267 8639267 G A PLCB1 Missense_Mutation p.E260K 0.11 deleterious(0) possibly_damaging(0.574) TCGA-EE-A29E-06 20 9353042 9353042 C T PLCB4 Silent p.F226F 0.45 TCGA-EE-A29E-06 20 9520098 9520098 G A PAK7 3'UTR 0.10 TCGA-EE-A29E-06 20 9546684 9546684 C T PAK7 Silent p.R446R 0.52 TCGA-EE-A29E-06 20 9561072 9561072 G A PAK7 Missense_Mutation p.S237F 0.51 deleterious_low_confidence(0.03) benign(0.259) TCGA-EE-A29E-06 21 11029651 11029651 C T BAGE2 RNA 0.18 TCGA-EE-A29E-06 21 11038751 11038751 G A BAGE2 RNA 0.20 TCGA-EE-A29E-06 21 11047521 11047521 C T BAGE2 RNA 0.10 TCGA-EE-A29E-06 21 15884877 15884877 C T SAMSN1 Silent p.E167E 0.38 TCGA-EE-A29E-06 21 16340338 16340338 G A NRIP1 Missense_Mutation p.P59L 0.47 deleterious(0) possibly_damaging(0.714) TCGA-EE-A29E-06 21 19775806 19775806 T C TMPRSS15 Missense_Mutation p.E45G 0.33 tolerated(0.28) benign(0.003) TCGA-EE-A29E-06 21 27097615 27097615 G A ATP5J Silent p.L79L 0.50 TCGA-EE-A29E-06 21 27354660 27354660 G A APP Silent p.S407S 0.39 TCGA-EE-A29E-06 21 30338887 30338887 G A LTN1 Silent p.V688V 0.34 TCGA-EE-A29E-06 21 30532351 30532351 G A MAP3K7CL Silent p.K174K 0.33 TCGA-EE-A29E-06 21 31813028 31813028 C T KRTAP15-1 Missense_Mutation p.S128L 0.31 tolerated(0.18) possibly_damaging(0.863) TCGA-EE-A29E-06 21 31852429 31852429 C T KRTAP19-1 Missense_Mutation p.G70S 0.36 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A29E-06 21 32595738 32595738 G A TIAM1 Missense_Mutation p.S660L 0.38 deleterious(0.01) possibly_damaging(0.731) TCGA-EE-A29E-06 21 34793917 34793917 C G IFNGR2 Missense_Mutation p.L113V 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 21 34927194 34927194 T C SON Missense_Mutation p.V1886A 0.34 unknown(0) TCGA-EE-A29E-06 21 36081767 36081767 G A CLIC6 Silent p.R610R 0.53 TCGA-EE-A29E-06 21 36088871 36088871 C T CLIC6 3'UTR 0.50 TCGA-EE-A29E-06 21 36088872 36088872 C T CLIC6 3'UTR 0.56 TCGA-EE-A29E-06 21 38302591 38302591 A G HLCS Missense_Mutation p.V380A 0.30 tolerated(0.43) benign(0.001) TCGA-EE-A29E-06 21 38390414 38390414 G A RIPPLY3 Silent p.G160G 0.29 TCGA-EE-A29E-06 21 39772548 39772548 G A ERG Silent p.F238F 0.32 TCGA-EE-A29E-06 21 40184979 40184979 C T ETS2 Missense_Mutation p.S42F 0.37 deleterious(0.03) benign(0.316) TCGA-EE-A29E-06 21 40778104 40778104 C T LCA5L Missense_Mutation p.G573R 0.38 tolerated(0.49) benign(0.048) TCGA-EE-A29E-06 21 41143056 41143056 G A IGSF5 Missense_Mutation p.G211E 0.28 tolerated(0.38) probably_damaging(0.999) TCGA-EE-A29E-06 21 41452109 41452109 C T DSCAM Missense_Mutation p.E1464K 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29E-06 21 41539166 41539166 C T DSCAM Silent p.Q999Q 0.41 TCGA-EE-A29E-06 21 41559082 41559082 C T DSCAM Missense_Mutation p.D919N 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29E-06 21 41648155 41648155 C T DSCAM Missense_Mutation p.R742Q 0.30 deleterious(0.01) possibly_damaging(0.745) TCGA-EE-A29E-06 21 41719772 41719772 G A DSCAM Silent p.L345L 0.42 TCGA-EE-A29E-06 21 41725446 41725446 C T DSCAM Missense_Mutation p.E294K 0.36 tolerated(0.26) probably_damaging(0.995) TCGA-EE-A29E-06 21 43291606 43291606 G A PRDM15 Missense_Mutation p.P180S 0.46 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A29E-06 21 43792812 43792812 G A TMPRSS3 3'UTR 0.45 TCGA-EE-A29E-06 21 43838527 43838527 C T UBASH3A Silent p.F285F 0.40 TCGA-EE-A29E-06 21 44592345 44592345 C T CRYAA Silent p.I159I 0.28 TCGA-EE-A29E-06 21 44949831 44949831 C T HSF2BP Missense_Mutation p.E270K 0.50 deleterious(0) probably_damaging(0.953) TCGA-EE-A29E-06 21 45671535 45671535 G A DNMT3L Missense_Mutation p.P247L 0.31 deleterious(0.03) possibly_damaging(0.798) TCGA-EE-A29E-06 21 45819208 45819208 G A TRPM2 Missense_Mutation p.E698K 0.35 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A29E-06 21 45959365 45959365 G A KRTAP10-1 Silent p.T223T 0.10 TCGA-EE-A29E-06 21 45999863 45999863 G A KRTAP10-5 Missense_Mutation p.S198L 0.35 tolerated(0.45) benign(0.32) TCGA-EE-A29E-06 21 46021436 46021436 C T KRTAP10-7 Silent p.T305T 0.30 TCGA-EE-A29E-06 21 46074200 46074200 C T KRTAP12-4 Missense_Mutation p.G111D 0.40 deleterious(0) benign(0.08) TCGA-EE-A29E-06 21 46078160 46078160 C G KRTAP12-3 Missense_Mutation p.I88M 0.40 deleterious(0.02) possibly_damaging(0.603) TCGA-EE-A29E-06 21 46310002 46310002 C T ITGB2 Silent p.Q516Q 0.24 TCGA-EE-A29E-06 21 46901891 46901891 T A COL18A1 Silent p.P722P 0.51 TCGA-EE-A29E-06 21 46927500 46927500 G A COL18A1 Missense_Mutation p.R1261Q 0.33 benign(0.161) TCGA-EE-A29E-06 21 46945830 46945830 C A SLC19A1 Silent p.L398L 0.34 TCGA-EE-A29E-06 21 47542842 47542842 A G COL6A2 Silent p.K554K 0.26 TCGA-EE-A29E-06 21 47570152 47570152 G A FTCD Missense_Mutation p.P263S 0.32 tolerated(0.15) benign(0.272) TCGA-EE-A29E-06 22 17447179 17447179 G A GAB4 Missense_Mutation p.P367S 0.43 tolerated(1) possibly_damaging(0.857) TCGA-EE-A29E-06 22 17684653 17684653 T G CECR1 Missense_Mutation p.N185H 0.39 tolerated(0.16) benign(0.005) TCGA-EE-A29E-06 22 17684654 17684654 C T CECR1 Silent p.R184R 0.39 TCGA-EE-A29E-06 22 18022581 18022581 C T CECR2 Missense_Mutation p.P896S 0.25 tolerated_low_confidence(0.11) benign(0.033) TCGA-EE-A29E-06 22 18300464 18300464 G A MICAL3 Missense_Mutation p.L1655F 0.32 benign(0.003) TCGA-EE-A29E-06 22 20229682 20229682 G A RTN4R Missense_Mutation p.T325I 0.52 deleterious(0.01) benign(0.017) TCGA-EE-A29E-06 22 21329051 21329051 C T AIFM3 Silent p.I222I 0.36 TCGA-EE-A29E-06 22 21989446 21989446 C T CCDC116 Missense_Mutation p.S365F 0.35 tolerated(0.23) possibly_damaging(0.546) TCGA-EE-A29E-06 22 22599544 22599544 G A VPREB1 Missense_Mutation p.S78N 0.41 tolerated(0.28) benign(0.002) TCGA-EE-A29E-06 22 22724416 22724416 G A IGLV7-46 Silent p.E104E 0.50 TCGA-EE-A29E-06 22 23114987 23114987 A C IGLV3-12 Missense_Mutation p.N87H 0.29 deleterious(0) probably_damaging(0.978) TCGA-EE-A29E-06 22 23235926 23235926 C T IGLL5 Missense_Mutation p.P85S 0.41 deleterious_low_confidence(0) benign(0.021) TCGA-EE-A29E-06 22 23235927 23235927 C T IGLL5 Missense_Mutation p.P85L 0.41 deleterious_low_confidence(0) benign(0.13) TCGA-EE-A29E-06 22 23265077 23265077 T C IGLC7 Missense_Mutation p.C105R 0.32 deleterious_low_confidence(0) possibly_damaging(0.49) TCGA-EE-A29E-06 22 23465505 23465505 G A GNAZ Missense_Mutation p.E319K 0.54 tolerated(0.05) possibly_damaging(0.871) TCGA-EE-A29E-06 22 23980795 23980795 G A GUSBP11 RNA 0.60 TCGA-EE-A29E-06 22 24037175 24037175 A T RGL4 Missense_Mutation p.D352V 0.50 deleterious(0) possibly_damaging(0.783) TCGA-EE-A29E-06 22 24584090 24584090 G A SUSD2 Silent p.P776P 0.33 TCGA-EE-A29E-06 22 24659664 24659664 C T POM121L9P RNA 0.33 TCGA-EE-A29E-06 22 25024704 25024704 C T GGT1 Silent p.I536I 0.43 TCGA-EE-A29E-06 22 25152644 25152644 G A PIWIL3 Silent p.L128L 0.21 TCGA-EE-A29E-06 22 25264418 25264418 G A SGSM1 Missense_Mutation p.G357E 0.51 deleterious(0) probably_damaging(0.958) TCGA-EE-A29E-06 22 25331514 25331514 G A TMEM211 Missense_Mutation p.S59F 0.33 deleterious(0.04) benign(0.395) TCGA-EE-A29E-06 22 25753304 25753304 G A LRP5L Missense_Mutation p.S119F 0.22 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A29E-06 22 26164828 26164828 G A MYO18B Silent p.G315G 0.33 TCGA-EE-A29E-06 22 26181423 26181423 G A MYO18B Missense_Mutation p.D781N 0.30 deleterious(0) possibly_damaging(0.549) TCGA-EE-A29E-06 22 26231410 26231410 G T MYO18B Missense_Mutation p.G1070W 0.39 deleterious(0) probably_damaging(0.972) TCGA-EE-A29E-06 22 26422841 26422841 C T MYO18B Missense_Mutation p.L2301F 0.36 tolerated(0.29) probably_damaging(0.961) TCGA-EE-A29E-06 22 26688992 26688992 C T SEZ6L Missense_Mutation p.P239S 0.60 deleterious(0.03) benign(0.005) TCGA-EE-A29E-06 22 26692900 26692900 G A SEZ6L Missense_Mutation p.G339E 0.71 deleterious(0) probably_damaging(0.978) TCGA-EE-A29E-06 22 26895212 26895212 G A TFIP11 Missense_Mutation p.T396I 0.44 deleterious(0) benign(0.141) TCGA-EE-A29E-06 22 27003943 27003943 G A CRYBB1 Silent p.F114F 0.28 TCGA-EE-A29E-06 22 28146844 28146844 G A MN1 3'UTR 0.38 TCGA-EE-A29E-06 22 28306962 28306962 G A PITPNB Missense_Mutation p.H63Y 0.43 tolerated(0.07) benign(0.179) TCGA-EE-A29E-06 22 29694761 29694761 C T EWSR1 Missense_Mutation p.R491C 0.41 tolerated(0.15) unknown(0) TCGA-EE-A29E-06 22 29734987 29734987 G A AP1B1 Missense_Mutation p.P719S 0.42 tolerated(0.06) possibly_damaging(0.65) TCGA-EE-A29E-06 22 30209463 30209463 G A ASCC2 Silent p.F263F 0.36 TCGA-EE-A29E-06 22 30857576 30857576 C T SEC14L3 Missense_Mutation p.E293K 0.48 deleterious(0.04) possibly_damaging(0.879) TCGA-EE-A29E-06 22 30951702 30951702 G A GAL3ST1 Silent p.F170F 0.39 TCGA-EE-A29E-06 22 30952040 30952040 C T GAL3ST1 Missense_Mutation p.E58K 0.37 tolerated(0.62) benign(0.022) TCGA-EE-A29E-06 22 30974830 30974830 G A PES1 Silent p.I559I 0.40 TCGA-EE-A29E-06 22 32242923 32242923 C T DEPDC5 Missense_Mutation p.S1033F 0.41 tolerated(0.06) probably_damaging(0.969) TCGA-EE-A29E-06 22 32506127 32506127 G A SLC5A1 Nonsense_Mutation p.W641* 0.34 TCGA-EE-A29E-06 22 32754371 32754371 G A RFPL3 Missense_Mutation p.E105K 0.49 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A29E-06 22 32827380 32827380 G A BPIFC Silent p.L391L 0.44 TCGA-EE-A29E-06 22 32829741 32829741 G A BPIFC Nonsense_Mutation p.Q315* 0.46 TCGA-EE-A29E-06 22 32849332 32849332 C T BPIFC Intron 0.57 TCGA-EE-A29E-06 22 35783086 35783086 C T HMOX1 Missense_Mutation p.R185C 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 22 35808531 35808531 C T MCM5 Silent p.P316P 0.44 TCGA-EE-A29E-06 22 36661671 36661671 C T APOL1 Silent p.S279S 0.40 TCGA-EE-A29E-06 22 36690308 36690308 C A MYH9 Nonsense_Mutation p.E1223* 0.45 TCGA-EE-A29E-06 22 37154424 37154424 G A IFT27 Silent p.F164F 0.32 TCGA-EE-A29E-06 22 37211239 37211239 G A PVALB Silent p.V34V 0.39 TCGA-EE-A29E-06 22 37397939 37397939 G A TEX33 Missense_Mutation p.P143L 0.62 deleterious(0) possibly_damaging(0.851) TCGA-EE-A29E-06 22 37524378 37524378 G A IL2RB Silent p.L472L 0.38 TCGA-EE-A29E-06 22 37602969 37602969 A C SSTR3 Missense_Mutation p.F292V 0.42 tolerated(0.54) probably_damaging(0.964) TCGA-EE-A29E-06 22 37769084 37769084 C T ELFN2 3'UTR 0.38 TCGA-EE-A29E-06 22 37769085 37769085 C T ELFN2 3'UTR 0.38 TCGA-EE-A29E-06 22 37912287 37912287 C T CARD10 Missense_Mutation p.G131D 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 22 38120903 38120903 C T TRIOBP Silent p.T780T 0.32 TCGA-EE-A29E-06 22 38245426 38245426 C T EIF3L 5'UTR 0.35 TCGA-EE-A29E-06 22 38373922 38373922 G A SOX10 Missense_Mutation p.P217S 0.37 tolerated(0.67) benign(0.027) TCGA-EE-A29E-06 22 38823898 38823898 G A KCNJ4 Silent p.I80I 0.60 TCGA-EE-A29E-06 22 39441500 39441500 C T APOBEC3F Silent p.F173F 0.42 TCGA-EE-A29E-06 22 39497337 39497337 G A APOBEC3H Nonsense_Mutation p.W82* 0.36 TCGA-EE-A29E-06 22 39710186 39710186 T A RPL3 Missense_Mutation p.I293F 0.41 deleterious(0.01) benign(0.168) TCGA-EE-A29E-06 22 39908004 39908004 C T MIEF1 Missense_Mutation p.P99S 0.34 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A29E-06 22 39918017 39918017 C T ATF4 Missense_Mutation p.P156S 0.39 tolerated(0.13) probably_damaging(1) TCGA-EE-A29E-06 22 40064362 40064362 G A CACNA1I Silent p.L1390L 0.27 TCGA-EE-A29E-06 22 40075813 40075813 C T CACNA1I Silent p.S1827S 0.56 TCGA-EE-A29E-06 22 40078599 40078599 C T CACNA1I Silent p.F1921F 0.48 TCGA-EE-A29E-06 22 40217101 40217101 C T ENTHD1 Silent p.L243L 0.41 TCGA-EE-A29E-06 22 40283624 40283624 C T ENTHD1 Silent p.L43L 0.46 TCGA-EE-A29E-06 22 40417334 40417334 C T FAM83F Silent p.L274L 0.36 TCGA-EE-A29E-06 22 42807586 42807586 G A NFAM1 Missense_Mutation p.P93L 0.48 tolerated(0.76) benign(0.026) TCGA-EE-A29E-06 22 43435692 43435692 G A TTLL1 3'UTR 0.41 TCGA-EE-A29E-06 22 43435693 43435693 A C TTLL1 3'UTR 0.37 TCGA-EE-A29E-06 22 43599962 43599962 C T SCUBE1 3'UTR 0.45 TCGA-EE-A29E-06 22 43996075 43996075 G A EFCAB6 Missense_Mutation p.S917L 0.42 tolerated(0.08) benign(0.288) TCGA-EE-A29E-06 22 44028011 44028011 G A EFCAB6 Missense_Mutation p.P736S 0.39 tolerated(0.15) probably_damaging(0.911) TCGA-EE-A29E-06 22 45689117 45689117 C T UPK3A Silent p.I209I 0.42 TCGA-EE-A29E-06 22 45749993 45749993 C T SMC1B Silent p.K1046K 0.44 TCGA-EE-A29E-06 22 46656048 46656048 G A PKDREJ Missense_Mutation p.L1058F 0.41 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29E-06 22 46656898 46656898 C T PKDREJ Silent p.Q774Q 0.34 TCGA-EE-A29E-06 22 50596499 50596499 G A MOV10L1 Missense_Mutation p.R1027Q 0.35 deleterious(0.03) possibly_damaging(0.746) TCGA-EE-A29E-06 22 50696677 50696677 C T MAPK12 Silent p.T103T 0.40 TCGA-EE-A29E-06 22 50728408 50728408 G A PLXNB2 Silent p.D202D 0.40 TCGA-EE-A29E-06 22 51237319 51237319 C T RPL23AP82 RNA 0.43 TCGA-EE-A29E-06 2 100171180 100171180 G A AFF3 Silent p.A1125A 0.33 TCGA-EE-A29E-06 2 100210137 100210137 G A AFF3 Silent p.S687S 0.38 TCGA-EE-A29E-06 2 101656758 101656758 G A TBC1D8 Missense_Mutation p.S306L 0.28 tolerated(0.07) possibly_damaging(0.57) TCGA-EE-A29E-06 2 102968423 102968423 C T IL1RL1 3'UTR 0.33 TCGA-EE-A29E-06 2 103013104 103013104 G A IL18R1 Missense_Mutation p.E462K 0.35 tolerated(0.55) benign(0.021) TCGA-EE-A29E-06 2 103039762 103039762 C T IL18RAP Missense_Mutation p.L9F 0.40 tolerated(0.13) benign(0.405) TCGA-EE-A29E-06 2 103067478 103067478 G A IL18RAP Missense_Mutation p.G461R 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 2 103136374 103136374 G A SLC9A4 Missense_Mutation p.R593K 0.40 tolerated(0.1) benign(0.036) TCGA-EE-A29E-06 2 103281714 103281714 C T SLC9A2 Silent p.T303T 0.44 TCGA-EE-A29E-06 2 103300637 103300637 C T SLC9A2 Missense_Mutation p.P423S 0.36 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 2 106002913 106002913 G A FHL2 Silent p.L21L 0.26 TCGA-EE-A29E-06 2 107021559 107021559 G A RGPD3 3'UTR 0.29 TCGA-EE-A29E-06 2 107041161 107041161 G A RGPD3 Missense_Mutation p.L1088F 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 107041256 107041256 C T RGPD3 Missense_Mutation p.G1056D 0.23 tolerated(1) benign(0) TCGA-EE-A29E-06 2 107446626 107446626 G A ST6GAL2 Missense_Mutation p.P405L 0.40 possibly_damaging(0.856) TCGA-EE-A29E-06 2 107460303 107460303 G A ST6GAL2 Missense_Mutation p.S44F 0.38 possibly_damaging(0.868) TCGA-EE-A29E-06 2 108488225 108488225 G A RGPD4 Silent p.R1255R 0.39 TCGA-EE-A29E-06 2 108488470 108488470 C T RGPD4 Missense_Mutation p.P1337L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 108489117 108489117 G A RGPD4 Missense_Mutation p.E1553K 0.28 tolerated(0.1) probably_damaging(0.913) TCGA-EE-A29E-06 2 108489124 108489124 C T RGPD4 Missense_Mutation p.S1555L 0.26 deleterious(0) possibly_damaging(0.877) TCGA-EE-A29E-06 2 108499263 108499263 C T RGPD4 Missense_Mutation p.P1734S 0.32 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-EE-A29E-06 2 108625095 108625095 C T SLC5A7 Missense_Mutation p.S357F 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 108627006 108627006 C T SLC5A7 Missense_Mutation p.P478S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 108910264 108910264 C T SULT1C2 Silent p.Y47Y 0.40 TCGA-EE-A29E-06 2 108910803 108910803 A G SULT1C2 Silent p.Q90Q 0.53 TCGA-EE-A29E-06 2 108994910 108994910 G A SULT1C4 Nonsense_Mutation p.W39* 0.43 TCGA-EE-A29E-06 2 108998244 108998244 G A SULT1C4 Missense_Mutation p.E66K 0.47 deleterious(0) benign(0.405) TCGA-EE-A29E-06 2 108999892 108999892 G A SULT1C4 Missense_Mutation p.E181K 0.39 deleterious(0.02) benign(0.018) TCGA-EE-A29E-06 2 109383802 109383802 C T RANBP2 Silent p.F2269F 0.39 TCGA-EE-A29E-06 2 109404498 109404498 C T CCDC138 Missense_Mutation p.S35L 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-EE-A29E-06 2 110935940 110935940 T A NPHP1 Intron 0.50 TCGA-EE-A29E-06 2 112536329 112536329 G A ANAPC1 Missense_Mutation p.L1770F 0.21 tolerated(0.14) benign(0.017) TCGA-EE-A29E-06 2 112614445 112614445 C T ANAPC1 Silent p.E459E 0.11 TCGA-EE-A29E-06 2 112751959 112751959 G A MERTK Silent p.V476V 0.41 TCGA-EE-A29E-06 2 113518340 113518340 G A CKAP2L Missense_Mutation p.P36S 0.28 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A29E-06 2 113675276 113675276 C T IL37 Silent p.L110L 0.39 TCGA-EE-A29E-06 2 113675341 113675341 C T IL37 Missense_Mutation p.S132F 0.43 deleterious(0.04) possibly_damaging(0.796) TCGA-EE-A29E-06 2 113820285 113820285 G A IL36RN 3'UTR 0.67 TCGA-EE-A29E-06 2 11593743 11593743 G A E2F6 Silent p.L115L 0.32 TCGA-EE-A29E-06 2 116497382 116497382 G A DPP10 Missense_Mutation p.M259I 0.45 deleterious(0.01) benign(0.002) TCGA-EE-A29E-06 2 118698861 118698861 G A CCDC93 Nonsense_Mutation p.R476* 0.40 TCGA-EE-A29E-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.37 TCGA-EE-A29E-06 2 120194827 120194827 C T TMEM37 Silent p.S128S 0.39 TCGA-EE-A29E-06 2 121745959 121745959 C T GLI2 Silent p.S823S 0.50 TCGA-EE-A29E-06 2 122204918 122204918 G A CLASP1 Missense_Mutation p.S636F 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 122513318 122513318 C T TSN 5'UTR 0.60 TCGA-EE-A29E-06 2 124999873 124999873 G A CNTNAP5 Missense_Mutation p.G95E 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 128186197 128186197 G A PROC Missense_Mutation p.R354K 0.35 tolerated(0.47) benign(0.018) TCGA-EE-A29E-06 2 128238461 128238461 G A IWS1 3'UTR 0.41 TCGA-EE-A29E-06 2 128747391 128747391 C G SAP130 Silent p.G535G 0.39 TCGA-EE-A29E-06 2 128900740 128900740 C T UGGT1 Missense_Mutation p.P598S 0.42 tolerated(0.16) benign(0.035) TCGA-EE-A29E-06 2 130877705 130877705 G A POTEF Silent p.F128F 0.41 TCGA-EE-A29E-06 2 131487351 131487351 C T GPR148 Silent p.T209T 0.35 TCGA-EE-A29E-06 2 131704127 131704127 C T ARHGEF4 Missense_Mutation p.P116S 0.36 tolerated_low_confidence(0.19) benign(0.001) TCGA-EE-A29E-06 2 131976461 131976461 G A POTEE Silent p.R162R 0.20 TCGA-EE-A29E-06 2 132021551 132021551 C T POTEE Silent p.S841S 0.30 TCGA-EE-A29E-06 2 132021552 132021552 C T POTEE Silent p.L842L 0.30 TCGA-EE-A29E-06 2 132905720 132905720 C T ANKRD30BL 3'UTR 0.33 TCGA-EE-A29E-06 2 133541233 133541233 G A NCKAP5 Missense_Mutation p.R1051C 0.49 deleterious(0.01) possibly_damaging(0.646) TCGA-EE-A29E-06 2 135740872 135740872 G A MAP3K19 Intron 0.37 TCGA-EE-A29E-06 2 135891593 135891593 C T RAB3GAP1 Silent p.L497L 0.44 TCGA-EE-A29E-06 2 135988470 135988470 G A ZRANB3 Nonsense_Mutation p.R523* 0.34 TCGA-EE-A29E-06 2 136533860 136533860 C T UBXN4 Missense_Mutation p.S331F 0.39 tolerated(0.13) possibly_damaging(0.784) TCGA-EE-A29E-06 2 136566152 136566152 C T LCT Silent p.R1255R 0.34 TCGA-EE-A29E-06 2 136570403 136570403 G A LCT Missense_Mutation p.P611S 0.27 tolerated(0.11) possibly_damaging(0.672) TCGA-EE-A29E-06 2 137814029 137814029 G A THSD7B Missense_Mutation p.G60E 0.47 deleterious(0) probably_damaging(0.969) TCGA-EE-A29E-06 2 138320903 138320903 G A THSD7B Missense_Mutation p.G1087E 0.35 deleterious(0) unknown(0) TCGA-EE-A29E-06 2 141110608 141110608 G A LRP1B Missense_Mutation p.S3855F 0.37 benign(0.066) TCGA-EE-A29E-06 2 141135811 141135811 C T LRP1B Missense_Mutation p.D3526N 0.31 possibly_damaging(0.822) TCGA-EE-A29E-06 2 141135812 141135812 C T LRP1B Silent p.G3525G 0.31 TCGA-EE-A29E-06 2 141260580 141260580 G A LRP1B Missense_Mutation p.P2872S 0.40 benign(0.008) TCGA-EE-A29E-06 2 141294168 141294168 C T LRP1B Missense_Mutation p.E2542K 0.40 possibly_damaging(0.621) TCGA-EE-A29E-06 2 141457988 141457988 G A LRP1B Silent p.S2210S 0.35 TCGA-EE-A29E-06 2 141459789 141459789 G A LRP1B Missense_Mutation p.R2075C 0.37 possibly_damaging(0.689) TCGA-EE-A29E-06 2 141474303 141474303 G A LRP1B Silent p.I1947I 0.46 TCGA-EE-A29E-06 2 141533700 141533700 G A LRP1B Missense_Mutation p.H1823Y 0.28 benign(0.152) TCGA-EE-A29E-06 2 141607715 141607715 C T LRP1B Missense_Mutation p.R1632Q 0.37 possibly_damaging(0.553) TCGA-EE-A29E-06 2 141625219 141625219 G A LRP1B Nonsense_Mutation p.Q1507* 0.44 TCGA-EE-A29E-06 2 141777515 141777515 C T LRP1B Missense_Mutation p.G649E 0.39 probably_damaging(0.937) TCGA-EE-A29E-06 2 141777596 141777596 T A LRP1B Missense_Mutation p.K622I 0.42 possibly_damaging(0.904) TCGA-EE-A29E-06 2 141806610 141806610 G A LRP1B Silent p.F578F 0.31 TCGA-EE-A29E-06 2 1418234 1418234 C T TPO Silent p.A18A 0.57 TCGA-EE-A29E-06 2 142237992 142237992 C T LRP1B Missense_Mutation p.G106R 0.43 probably_damaging(0.988) TCGA-EE-A29E-06 2 1437351 1437351 G A TPO Silent p.L107L 0.39 TCGA-EE-A29E-06 2 143742654 143742654 G A KYNU Missense_Mutation p.G244D 0.39 deleterious(0) probably_damaging(0.978) TCGA-EE-A29E-06 2 1457515 1457515 C T TPO Missense_Mutation p.P178S 0.32 deleterious(0) probably_damaging(0.946) TCGA-EE-A29E-06 2 1488383 1488383 G A TPO Missense_Mutation p.D452N 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 1488505 1488505 C T TPO Silent p.F492F 0.30 TCGA-EE-A29E-06 2 149247034 149247034 C T MBD5 Missense_Mutation p.P1045L 0.42 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A29E-06 2 150071133 150071133 C T LYPD6B Missense_Mutation p.A178V 0.39 benign(0.426) TCGA-EE-A29E-06 2 152138507 152138507 G A NMI Silent p.I44I 0.34 TCGA-EE-A29E-06 2 152325177 152325177 C T RIF1 Missense_Mutation p.S2283F 0.33 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A29E-06 2 152352869 152352869 T A NEB Missense_Mutation p.E8136V 0.46 possibly_damaging(0.607) TCGA-EE-A29E-06 2 152397999 152397999 G A NEB Missense_Mutation p.L6882F 0.37 benign(0.051) TCGA-EE-A29E-06 2 152410366 152410366 C T NEB Silent p.R6534R 0.50 TCGA-EE-A29E-06 2 152420200 152420200 C T NEB Missense_Mutation p.G6205S 0.39 probably_damaging(1) TCGA-EE-A29E-06 2 152421650 152421650 C T NEB Missense_Mutation p.E6127K 0.29 probably_damaging(0.999) TCGA-EE-A29E-06 2 152422268 152422268 G A NEB Missense_Mutation p.H6075Y 0.56 benign(0.059) TCGA-EE-A29E-06 2 152483671 152483671 G A NEB Missense_Mutation p.P3398S 0.56 probably_damaging(1) TCGA-EE-A29E-06 2 152500515 152500515 C T NEB Silent p.K2591K 0.42 TCGA-EE-A29E-06 2 153482066 153482066 G A FMNL2 Missense_Mutation p.R651Q 0.41 benign(0.417) TCGA-EE-A29E-06 2 153484914 153484914 G A FMNL2 Missense_Mutation p.R756K 0.43 benign(0.14) TCGA-EE-A29E-06 2 1544401 1544401 C T TPO Missense_Mutation p.S885L 0.43 tolerated_low_confidence(0.35) benign(0) TCGA-EE-A29E-06 2 158140883 158140883 C T GALNT5 Missense_Mutation p.S515F 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 2 159517725 159517725 C T PKP4 Intron 0.50 TCGA-EE-A29E-06 2 160028664 160028664 C T TANC1 Missense_Mutation p.P462S 0.32 tolerated(0.14) benign(0.284) TCGA-EE-A29E-06 2 160676288 160676288 C T LY75-CD302 Missense_Mutation p.E1368K 0.31 tolerated(0.08) benign(0.081) TCGA-EE-A29E-06 2 160714961 160714961 G A LY75-CD302 Silent p.G765G 0.44 TCGA-EE-A29E-06 2 16086192 16086192 G A MYCN Silent p.K456K 0.41 TCGA-EE-A29E-06 2 162751198 162751198 G A SLC4A10 Missense_Mutation p.D402N 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 2 163083048 163083048 G A FAP Missense_Mutation p.P59S 0.40 tolerated(0.18) probably_damaging(0.952) TCGA-EE-A29E-06 2 163302840 163302840 G A KCNH7 Silent p.I414I 0.38 TCGA-EE-A29E-06 2 163374315 163374315 C T KCNH7 Missense_Mutation p.A273T 0.41 deleterious(0) probably_damaging(0.926) TCGA-EE-A29E-06 2 165550945 165550945 G A COBLL1 Missense_Mutation p.S1024L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 165551680 165551680 G A COBLL1 Missense_Mutation p.S779F 0.57 tolerated(0.11) benign(0.132) TCGA-EE-A29E-06 2 165950958 165950958 C T SCN3A Missense_Mutation p.E1488K 0.38 deleterious(0.03) possibly_damaging(0.492) TCGA-EE-A29E-06 2 165970408 165970408 C T SCN3A Missense_Mutation p.R1196Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 165986541 165986541 C T SCN3A Nonsense_Mutation p.W944* 0.40 TCGA-EE-A29E-06 2 166020939 166020939 G A SCN3A Missense_Mutation p.P189S 0.34 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 2 166152328 166152328 G A SCN2A 5'UTR 0.30 TCGA-EE-A29E-06 2 166170157 166170157 G A SCN2A Silent p.V354V 0.40 TCGA-EE-A29E-06 2 166245684 166245684 C T SCN2A Silent p.L1790L 0.39 TCGA-EE-A29E-06 2 166514530 166514530 G A CSRNP3 Silent p.K136K 0.28 TCGA-EE-A29E-06 2 166535324 166535324 G A CSRNP3 Missense_Mutation p.M273I 0.38 deleterious(0.01) benign(0.036) TCGA-EE-A29E-06 2 166866347 166866347 G A SCN1A Missense_Mutation p.S1295L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 166894560 166894560 C T SCN1A Missense_Mutation p.G891E 0.29 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 2 166896056 166896056 C T SCN1A Missense_Mutation p.M822I 0.35 deleterious(0.01) benign(0.184) TCGA-EE-A29E-06 2 166900267 166900267 G A SCN1A Missense_Mutation p.S652F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 166901660 166901660 C T SCN1A Missense_Mutation p.E519K 0.40 tolerated(1) probably_damaging(0.928) TCGA-EE-A29E-06 2 167055790 167055790 C T SCN9A Missense_Mutation p.E1776K 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A29E-06 2 167085308 167085308 G A SCN9A Missense_Mutation p.R1356C 0.42 deleterious(0.01) benign(0.428) TCGA-EE-A29E-06 2 167085452 167085452 G A SCN9A Missense_Mutation p.P1308S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 167129007 167129007 G A SCN9A Missense_Mutation p.L1074F 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29E-06 2 167142872 167142872 C T SCN9A Missense_Mutation p.E526K 0.34 tolerated(0.39) benign(0.066) TCGA-EE-A29E-06 2 167279822 167279822 A T SCN7A Missense_Mutation p.F992I 0.42 deleterious(0) possibly_damaging(0.633) TCGA-EE-A29E-06 2 16742265 16742265 C T FAM49A Missense_Mutation p.E235K 0.41 tolerated(0.06) possibly_damaging(0.58) TCGA-EE-A29E-06 2 16742758 16742758 C T FAM49A Missense_Mutation p.R160K 0.32 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 2 1677538 1677538 C T PXDN Missense_Mutation p.D299N 0.59 tolerated(0.09) possibly_damaging(0.477) TCGA-EE-A29E-06 2 1677558 1677558 G A PXDN Missense_Mutation p.S292F 0.19 deleterious(0.02) possibly_damaging(0.863) TCGA-EE-A29E-06 2 167992424 167992424 G A XIRP2 Silent p.V138V 0.32 TCGA-EE-A29E-06 2 168098326 168098326 C T XIRP2 Missense_Mutation p.S361L 0.44 probably_damaging(1) TCGA-EE-A29E-06 2 168101311 168101311 G A XIRP2 Missense_Mutation p.D1137N 0.54 probably_damaging(1) TCGA-EE-A29E-06 2 168101389 168101389 C T XIRP2 Missense_Mutation p.R1163C 0.29 probably_damaging(0.979) TCGA-EE-A29E-06 2 168102838 168102838 G A XIRP2 Missense_Mutation p.E1646K 0.42 probably_damaging(0.982) TCGA-EE-A29E-06 2 168102898 168102898 C T XIRP2 Silent p.L1666L 0.33 TCGA-EE-A29E-06 2 168103448 168103448 G A XIRP2 Missense_Mutation p.S1849N 0.45 benign(0.036) TCGA-EE-A29E-06 2 168103905 168103905 G A XIRP2 Missense_Mutation p.M2001I 0.36 benign(0.002) TCGA-EE-A29E-06 2 169711892 169711892 G A NOSTRIN Missense_Mutation p.E353K 0.30 deleterious(0.03) possibly_damaging(0.501) TCGA-EE-A29E-06 2 169764467 169764467 G A G6PC2 Missense_Mutation p.E316K 0.36 tolerated(0.91) benign(0.002) TCGA-EE-A29E-06 2 169938037 169938037 C T DHRS9 5'UTR 0.38 TCGA-EE-A29E-06 2 170011012 170011012 G A LRP2 Nonsense_Mutation p.Q4085* 0.49 TCGA-EE-A29E-06 2 170101310 170101310 G A LRP2 Missense_Mutation p.S1108F 0.37 possibly_damaging(0.786) TCGA-EE-A29E-06 2 170505779 170505779 A G CCDC173 Silent p.D410D 0.32 TCGA-EE-A29E-06 2 171248117 171248117 A T MYO3B Missense_Mutation p.E555D 0.32 tolerated(0.53) benign(0.008) TCGA-EE-A29E-06 2 171356153 171356153 C T MYO3B Intron 0.36 TCGA-EE-A29E-06 2 172305290 172305290 C T DCAF17 Missense_Mutation p.L141F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 2 172379235 172379235 C T CYBRD1 Silent p.F60F 0.33 TCGA-EE-A29E-06 2 172411207 172411207 G A CYBRD1 Missense_Mutation p.G244E 0.52 tolerated(0.12) benign(0.049) TCGA-EE-A29E-06 2 172926305 172926305 C T METAP1D Silent p.F40F 0.36 TCGA-EE-A29E-06 2 173338914 173338914 C T ITGA6 Missense_Mutation p.P303S 0.41 tolerated(0.21) benign(0.009) TCGA-EE-A29E-06 2 175324675 175324675 T C GPR155 Missense_Mutation p.T568A 0.33 tolerated(0.67) benign(0) TCGA-EE-A29E-06 2 175614848 175614848 G A CHRNA1 Silent p.F301F 0.34 TCGA-EE-A29E-06 2 176965348 176965348 G A HOXD12 Missense_Mutation p.E225K 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29E-06 2 17699689 17699689 G A RAD51AP2 5'UTR 0.49 TCGA-EE-A29E-06 2 177033817 177033817 G A HOXD3 5'UTR 0.60 TCGA-EE-A29E-06 2 177034194 177034194 C A HOXD3 Missense_Mutation p.Q118K 0.28 tolerated(0.9) benign(0.292) TCGA-EE-A29E-06 2 17773486 17773486 C T VSNL1 Nonsense_Mutation p.Q49* 0.36 TCGA-EE-A29E-06 2 178762793 178762793 C T PDE11A Missense_Mutation p.E432K 0.48 tolerated(0.15) benign(0.265) TCGA-EE-A29E-06 2 178988960 178988960 T A RBM45 Missense_Mutation p.L392H 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 179395285 179395285 C T TTN Missense_Mutation p.D35353N 0.40 TCGA-EE-A29E-06 2 179398114 179398114 C T TTN Missense_Mutation p.E34410K 0.26 TCGA-EE-A29E-06 2 179399109 179399109 T A TTN Missense_Mutation p.E34078V 0.49 TCGA-EE-A29E-06 2 179399748 179399748 G A TTN Missense_Mutation p.S33865F 0.31 TCGA-EE-A29E-06 2 179406264 179406264 C T TTN Missense_Mutation p.D32514N 0.59 TCGA-EE-A29E-06 2 179411902 179411902 A T TTN Silent p.R31450R 0.38 TCGA-EE-A29E-06 2 179417239 179417239 C T TTN Missense_Mutation p.E30130K 0.45 TCGA-EE-A29E-06 2 179425410 179425410 G A TTN Silent p.I28483I 0.33 TCGA-EE-A29E-06 2 179430965 179430965 C T TTN Missense_Mutation p.E26632K 0.45 TCGA-EE-A29E-06 2 179436373 179436373 G A TTN Missense_Mutation p.S24829F 0.38 TCGA-EE-A29E-06 2 179437802 179437802 A G TTN Missense_Mutation p.S24353P 0.30 TCGA-EE-A29E-06 2 179444372 179444372 C T TTN Missense_Mutation p.E22518K 0.39 TCGA-EE-A29E-06 2 179449576 179449576 C T TTN Missense_Mutation p.E21598K 0.34 TCGA-EE-A29E-06 2 179452454 179452454 G A TTN Silent p.L21194L 0.47 TCGA-EE-A29E-06 2 179454202 179454202 C T TTN Silent p.G20750G 0.43 TCGA-EE-A29E-06 2 179456617 179456617 G A TTN Missense_Mutation p.P19977S 0.32 TCGA-EE-A29E-06 2 179458944 179458944 G A TTN Silent p.F19392F 0.49 TCGA-EE-A29E-06 2 179463480 179463480 G A TTN Missense_Mutation p.P18986L 0.37 TCGA-EE-A29E-06 2 179468711 179468711 G A TTN Missense_Mutation p.R18235C 0.42 TCGA-EE-A29E-06 2 179481726 179481726 C T TTN Missense_Mutation p.D15964N 0.34 TCGA-EE-A29E-06 2 179485684 179485684 C T TTN Missense_Mutation p.R15218Q 0.51 TCGA-EE-A29E-06 2 179497958 179497958 G A TTN Missense_Mutation p.H14348Y 0.48 TCGA-EE-A29E-06 2 179498194 179498194 C T TTN Missense_Mutation p.E14298K 0.44 TCGA-EE-A29E-06 2 179514546 179514546 T G TTN Missense_Mutation p.K13298T 0.39 TCGA-EE-A29E-06 2 179547523 179547523 C T TTN Missense_Mutation p.E10999K 0.42 TCGA-EE-A29E-06 2 179565924 179565924 G A TTN Missense_Mutation p.P10202L 0.38 TCGA-EE-A29E-06 2 179576946 179576946 G A TTN Missense_Mutation p.P9204L 0.53 TCGA-EE-A29E-06 2 179576947 179576947 G A TTN Missense_Mutation p.P9204S 0.54 TCGA-EE-A29E-06 2 179577629 179577629 G A TTN Silent p.I9041I 0.32 TCGA-EE-A29E-06 2 179581943 179581943 C T TTN Silent p.L8506L 0.43 TCGA-EE-A29E-06 2 179583665 179583665 C T TTN Missense_Mutation p.E8088K 0.50 TCGA-EE-A29E-06 2 179586739 179586739 C T TTN Missense_Mutation p.D7551N 0.32 TCGA-EE-A29E-06 2 179587175 179587175 G A TTN Missense_Mutation p.P7447S 0.35 TCGA-EE-A29E-06 2 179588212 179588212 C T TTN Silent p.G7205G 0.50 TCGA-EE-A29E-06 2 179594213 179594213 C T TTN Missense_Mutation p.G6224R 0.38 TCGA-EE-A29E-06 2 179595882 179595882 C T TTN Missense_Mutation p.G5837E 0.41 TCGA-EE-A29E-06 2 179598116 179598116 C T TTN Missense_Mutation p.V5302I 0.41 TCGA-EE-A29E-06 2 179599324 179599324 G A TTN Missense_Mutation p.S5076F 0.41 TCGA-EE-A29E-06 2 179600660 179600660 G A TTN Missense_Mutation p.S4838L 0.31 TCGA-EE-A29E-06 2 179604238 179604238 C T TTN Silent p.E4574E 0.34 TCGA-EE-A29E-06 2 179605449 179605449 C T TTN Missense_Mutation p.E4171K 0.35 TCGA-EE-A29E-06 2 179605572 179605572 C T TTN Missense_Mutation p.E4130K 0.37 TCGA-EE-A29E-06 2 179605805 179605805 A T TTN Missense_Mutation p.F4052Y 0.40 TCGA-EE-A29E-06 2 179606375 179606375 G A TTN Missense_Mutation p.P3862L 0.42 TCGA-EE-A29E-06 2 179616047 179616047 G A TTN Intron 0.42 TCGA-EE-A29E-06 2 179629296 179629296 C T TTN Missense_Mutation p.D3316N 0.42 TCGA-EE-A29E-06 2 179629430 179629430 G A TTN Missense_Mutation p.S3271F 0.42 TCGA-EE-A29E-06 2 179632639 179632639 C T TTN Silent p.Q3106Q 0.42 TCGA-EE-A29E-06 2 179635380 179635380 C T TTN Silent p.L2713L 0.41 TCGA-EE-A29E-06 2 179641978 179641978 G A TTN Missense_Mutation p.S1571F 0.43 TCGA-EE-A29E-06 2 179644801 179644801 C T TTN Missense_Mutation p.E1219K 0.32 TCGA-EE-A29E-06 2 179656855 179656855 C T TTN Missense_Mutation p.E536K 0.55 TCGA-EE-A29E-06 2 179664562 179664562 C T TTN Missense_Mutation p.R220Q 0.45 TCGA-EE-A29E-06 2 179701823 179701823 G A CCDC141 Nonsense_Mutation p.Q1375* 0.37 TCGA-EE-A29E-06 2 179702184 179702184 C T CCDC141 Silent p.G1254G 0.50 TCGA-EE-A29E-06 2 179702243 179702243 C T CCDC141 Missense_Mutation p.E1235K 0.47 deleterious(0) probably_damaging(0.967) TCGA-EE-A29E-06 2 179710452 179710452 C T CCDC141 Silent p.K1125K 0.41 TCGA-EE-A29E-06 2 179714832 179714832 G A CCDC141 Missense_Mutation p.L1101F 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29E-06 2 179730620 179730620 C T CCDC141 Silent p.K866K 0.45 TCGA-EE-A29E-06 2 179742668 179742668 G A CCDC141 Intron 0.49 TCGA-EE-A29E-06 2 17997860 17997860 T G MSGN1 Silent p.S25S 0.36 TCGA-EE-A29E-06 2 17998085 17998085 C T MSGN1 Silent p.F100F 0.38 TCGA-EE-A29E-06 2 180634483 180634483 G A ZNF385B 5'UTR 0.36 TCGA-EE-A29E-06 2 182363378 182363378 G A ITGA4 Silent p.V523V 0.27 TCGA-EE-A29E-06 2 182374408 182374408 C T ITGA4 Silent p.T573T 0.31 TCGA-EE-A29E-06 2 182852557 182852557 C T PPP1R1C Missense_Mutation p.R32C 0.35 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A29E-06 2 183053786 183053786 C T PDE1A Missense_Mutation p.G392E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 183066172 183066172 G A PDE1A Silent p.F389F 0.35 TCGA-EE-A29E-06 2 183070689 183070689 T A PDE1A Missense_Mutation p.N310Y 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 185463733 185463733 G A ZNF804A Missense_Mutation p.G16E 0.39 deleterious(0) probably_damaging(0.972) TCGA-EE-A29E-06 2 185731149 185731149 A T ZNF804A Silent p.A55A 0.29 TCGA-EE-A29E-06 2 185801392 185801392 G A ZNF804A Silent p.E423E 0.38 TCGA-EE-A29E-06 2 185803675 185803675 C T ZNF804A Silent p.F1184F 0.48 TCGA-EE-A29E-06 2 186672120 186672120 C T FSIP2 Silent p.S6118S 0.35 TCGA-EE-A29E-06 2 18767596 18767596 C T NT5C1B Nonsense_Mutation p.W121* 0.38 TCGA-EE-A29E-06 2 188210969 188210969 C T CALCRL Missense_Mutation p.G443E 0.38 deleterious(0.02) possibly_damaging(0.729) TCGA-EE-A29E-06 2 188216659 188216659 G A CALCRL Silent p.F386F 0.54 TCGA-EE-A29E-06 2 188216896 188216896 C T CALCRL Missense_Mutation p.G358E 0.42 tolerated(0.15) benign(0.225) TCGA-EE-A29E-06 2 188228121 188228121 G A CALCRL Silent p.A203A 0.32 TCGA-EE-A29E-06 2 1893055 1893055 C T MYT1L Missense_Mutation p.M824I 0.36 tolerated(0.76) benign(0.006) TCGA-EE-A29E-06 2 189599368 189599368 C T DIRC1 Missense_Mutation p.G94R 0.38 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-EE-A29E-06 2 189864583 189864583 C T COL3A1 Missense_Mutation p.P749S 0.41 unknown(0) TCGA-EE-A29E-06 2 189869026 189869026 G A COL3A1 Missense_Mutation p.R956Q 0.41 probably_damaging(0.992) TCGA-EE-A29E-06 2 189907490 189907490 C T COL5A2 Missense_Mutation p.G1161S 0.53 unknown(0) TCGA-EE-A29E-06 2 189907887 189907887 G A COL5A2 Missense_Mutation p.P1154L 0.31 unknown(0) TCGA-EE-A29E-06 2 190426583 190426583 G A SLC40A1 3'UTR 0.38 TCGA-EE-A29E-06 2 190615320 190615320 A T OSGEPL1 Nonsense_Mutation p.L410* 0.32 TCGA-EE-A29E-06 2 190615322 190615322 T A OSGEPL1 Missense_Mutation p.Q409H 0.30 tolerated(0.24) benign(0.001) TCGA-EE-A29E-06 2 190922330 190922330 G A MSTN Missense_Mutation p.P261L 0.41 tolerated(0.19) benign(0.101) TCGA-EE-A29E-06 2 1926908 1926908 G A MYT1L Silent p.I211I 0.65 TCGA-EE-A29E-06 2 196545136 196545136 C T SLC39A10 Missense_Mutation p.H124Y 0.42 deleterious(0) probably_damaging(0.986) TCGA-EE-A29E-06 2 196548522 196548522 C T SLC39A10 Nonsense_Mutation p.Q370* 0.40 TCGA-EE-A29E-06 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.38 TCGA-EE-A29E-06 2 196661448 196661448 G A DNAH7 Missense_Mutation p.S3456L 0.20 tolerated(0.05) benign(0.13) TCGA-EE-A29E-06 2 196673584 196673584 C T DNAH7 Nonsense_Mutation p.W3302* 0.37 TCGA-EE-A29E-06 2 196746636 196746636 G A DNAH7 Silent p.I1948I 0.39 TCGA-EE-A29E-06 2 196749421 196749421 C T DNAH7 Missense_Mutation p.R1884Q 0.84 tolerated(0.48) benign(0) TCGA-EE-A29E-06 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.48 deleterious(0) possibly_damaging(0.846) TCGA-EE-A29E-06 2 197183873 197183873 C T HECW2 Missense_Mutation p.D581N 0.46 tolerated_low_confidence(0.29) benign(0.001) TCGA-EE-A29E-06 2 197184562 197184562 G A HECW2 Missense_Mutation p.P351L 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A29E-06 2 1983324 1983324 G A MYT1L Missense_Mutation p.P20S 0.44 tolerated(0.1) unknown(0) TCGA-EE-A29E-06 2 202074144 202074144 C T CASP10 Missense_Mutation p.S425F 0.45 deleterious(0.01) possibly_damaging(0.659) TCGA-EE-A29E-06 2 20240717 20240717 G A LAPTM4A Missense_Mutation p.S56F 0.44 tolerated(0.61) benign(0.155) TCGA-EE-A29E-06 2 202589077 202589077 G A ALS2 Silent p.F1151F 0.36 TCGA-EE-A29E-06 2 204058526 204058526 C T NBEAL1 Silent p.H2281H 0.40 TCGA-EE-A29E-06 2 205829921 205829921 G A PARD3B Missense_Mutation p.S90N 0.25 tolerated(0.2) benign(0.026) TCGA-EE-A29E-06 2 207170199 207170199 C T ZDBF2 Missense_Mutation p.P316L 0.33 tolerated(0.08) benign(0.002) TCGA-EE-A29E-06 2 207175935 207175935 C T ZDBF2 Missense_Mutation p.S2228L 0.46 tolerated(0.66) benign(0.32) TCGA-EE-A29E-06 2 207603156 207603156 C T MDH1B 3'UTR 0.54 TCGA-EE-A29E-06 2 208693162 208693162 G A PLEKHM3 Missense_Mutation p.P723S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 208986436 208986436 G A CRYGD Silent p.A162A 0.41 TCGA-EE-A29E-06 2 208994171 208994171 G A CRYGC Silent p.I82I 0.34 TCGA-EE-A29E-06 2 210559607 210559607 C T MAP2 Nonsense_Mutation p.R905* 0.43 TCGA-EE-A29E-06 2 210570450 210570450 C T MAP2 Silent p.T1577T 0.43 TCGA-EE-A29E-06 2 211168273 211168273 G A MYL1 Intron 0.25 TCGA-EE-A29E-06 2 211179783 211179783 G A MYL1 5'UTR 0.41 TCGA-EE-A29E-06 2 211179806 211179806 C T MYL1 5'UTR 0.38 TCGA-EE-A29E-06 2 212286772 212286772 G A ERBB4 Missense_Mutation p.S975L 0.45 deleterious(0) benign(0.269) TCGA-EE-A29E-06 2 21230212 21230212 C T APOB Silent p.Q3176Q 0.39 TCGA-EE-A29E-06 2 21231943 21231943 G A APOB Silent p.A2599A 0.38 TCGA-EE-A29E-06 2 21234237 21234237 C T APOB Missense_Mutation p.E1835K 0.46 probably_damaging(0.985) TCGA-EE-A29E-06 2 21245886 21245886 G A APOB Missense_Mutation p.S878F 0.50 probably_damaging(0.952) TCGA-EE-A29E-06 2 212652843 212652843 G A ERBB4 Missense_Mutation p.L155F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 213872055 213872055 C T IKZF2 3'UTR 0.57 TCGA-EE-A29E-06 2 214354721 214354721 C T SPAG16 Missense_Mutation p.P326L 0.30 tolerated(0.15) benign(0.194) TCGA-EE-A29E-06 2 214878736 214878736 C T SPAG16 Missense_Mutation p.P488S 0.43 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A29E-06 2 215278864 215278864 G A VWC2L 5'UTR 0.40 TCGA-EE-A29E-06 2 215809828 215809828 C T ABCA12 Missense_Mutation p.D2414N 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 2 215820071 215820071 G A ABCA12 Missense_Mutation p.S2083F 0.54 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29E-06 2 215838741 215838741 C T ABCA12 Missense_Mutation p.E1832K 0.33 tolerated(0.21) benign(0.04) TCGA-EE-A29E-06 2 215855735 215855735 C T ABCA12 Silent p.V1105V 0.39 TCGA-EE-A29E-06 2 216271221 216271221 G A FN1 Missense_Mutation p.S909F 0.28 deleterious(0.02) possibly_damaging(0.73) TCGA-EE-A29E-06 2 217124188 217124188 G A MARCH4 Silent p.G360G 0.51 TCGA-EE-A29E-06 2 218682809 218682809 G A TNS1 Missense_Mutation p.P1312S 0.36 tolerated(0.1) benign(0.029) TCGA-EE-A29E-06 2 219029809 219029809 C T CXCR1 Silent p.V42V 0.30 TCGA-EE-A29E-06 2 219206854 219206854 C T PNKD Silent p.F256F 0.28 TCGA-EE-A29E-06 2 219222789 219222789 G A C2orf62 Missense_Mutation p.E117K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 219232241 219232241 G T C2orf62 Missense_Mutation p.K307N 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 219520896 219520896 G A ZNF142 Missense_Mutation p.P86L 0.34 deleterious(0.02) possibly_damaging(0.769) TCGA-EE-A29E-06 2 219521062 219521062 G T ZNF142 Missense_Mutation p.L31I 0.32 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-EE-A29E-06 2 219553520 219553520 C T STK36 Missense_Mutation p.S494F 0.38 tolerated(0.07) benign(0.299) TCGA-EE-A29E-06 2 219557366 219557366 C T STK36 Missense_Mutation p.S659F 0.33 tolerated(0.72) benign(0.002) TCGA-EE-A29E-06 2 219903154 219903154 G A CCDC108 Silent p.I100I 0.39 TCGA-EE-A29E-06 2 219903697 219903697 G A CCDC108 Missense_Mutation p.S25F 0.30 deleterious_low_confidence(0.02) benign(0.01) TCGA-EE-A29E-06 2 219903722 219903722 C T CCDC108 Missense_Mutation p.E17K 0.53 tolerated_low_confidence(0.55) benign(0.001) TCGA-EE-A29E-06 2 220088932 220088932 G C ATG9A Missense_Mutation p.I387M 0.41 deleterious(0.05) possibly_damaging(0.793) TCGA-EE-A29E-06 2 220286069 220286069 C T DES Missense_Mutation p.S344F 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 220338338 220338338 C T SPEG Silent p.V1420V 0.31 TCGA-EE-A29E-06 2 220353270 220353270 G A SPEG Missense_Mutation p.D2637N 0.44 probably_damaging(0.999) TCGA-EE-A29E-06 2 220420732 220420732 G A OBSL1 Intron 0.44 TCGA-EE-A29E-06 2 222291234 222291234 G A EPHA4 Silent p.F932F 0.60 TCGA-EE-A29E-06 2 223168963 223168963 C T CCDC140 Silent p.S114S 0.37 TCGA-EE-A29E-06 2 225670001 225670001 G A DOCK10 Nonsense_Mutation p.R1325* 0.36 TCGA-EE-A29E-06 2 226447152 226447152 C T NYAP2 Missense_Mutation p.P340L 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 227731934 227731934 C T RHBDD1 Missense_Mutation p.H156Y 0.31 tolerated(0.28) benign(0.034) TCGA-EE-A29E-06 2 227953465 227953465 C T COL4A4 Silent p.G509G 0.51 TCGA-EE-A29E-06 2 227963448 227963448 G A COL4A4 Missense_Mutation p.P389L 0.30 probably_damaging(0.975) TCGA-EE-A29E-06 2 227963449 227963449 G A COL4A4 Missense_Mutation p.P389S 0.28 probably_damaging(0.96) TCGA-EE-A29E-06 2 227968695 227968695 C T COL4A4 Missense_Mutation p.G270E 0.42 probably_damaging(1) TCGA-EE-A29E-06 2 228137698 228137698 C T COL4A3 Missense_Mutation p.P598S 0.41 unknown(0) TCGA-EE-A29E-06 2 228148571 228148571 G A COL4A3 Silent p.R915R 0.32 TCGA-EE-A29E-06 2 228205011 228205011 C T MFF Nonsense_Mutation p.R145* 0.27 TCGA-EE-A29E-06 2 228771902 228771902 G A DAW1 Missense_Mutation p.D303N 0.40 tolerated(0.47) benign(0.008) TCGA-EE-A29E-06 2 228846528 228846528 C T SPHKAP Missense_Mutation p.D1670N 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 228860355 228860355 C T SPHKAP Missense_Mutation p.A1502T 0.37 tolerated(0.55) benign(0.013) TCGA-EE-A29E-06 2 228881913 228881913 C T SPHKAP Nonsense_Mutation p.W1219* 0.37 TCGA-EE-A29E-06 2 228882225 228882225 A C SPHKAP Silent p.S1115S 0.41 TCGA-EE-A29E-06 2 228884841 228884841 A T SPHKAP Silent p.V243V 0.33 TCGA-EE-A29E-06 2 229890639 229890639 G A PID1 Silent p.A152A 0.39 TCGA-EE-A29E-06 2 229890678 229890678 G A PID1 Silent p.F139F 0.41 TCGA-EE-A29E-06 2 230910951 230910951 G A SLC16A14 Silent p.F297F 0.51 TCGA-EE-A29E-06 2 231033701 231033701 G A SP110 3'UTR 0.62 TCGA-EE-A29E-06 2 231256802 231256802 G A SP140L Missense_Mutation p.G322E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 2 231404077 231404077 C T SP100 Silent p.I730I 0.39 TCGA-EE-A29E-06 2 232262809 232262809 C T B3GNT7 Missense_Mutation p.P127S 0.33 deleterious(0) probably_damaging(0.971) TCGA-EE-A29E-06 2 232577926 232577926 C T PTMA 3'UTR 0.43 TCGA-EE-A29E-06 2 233396114 233396114 C G CHRND Missense_Mutation p.F291L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 233839538 233839538 C T NGEF Nonsense_Mutation p.W21* 0.35 TCGA-EE-A29E-06 2 234079718 234079718 G A INPP5D Missense_Mutation p.E625K 0.33 tolerated(0.17) probably_damaging(0.936) TCGA-EE-A29E-06 2 234545533 234545533 C T UGT1A10 Missense_Mutation p.S122L 0.34 tolerated(0.14) benign(0.156) TCGA-EE-A29E-06 2 234580735 234580735 G A UGT1A9 Missense_Mutation p.G52E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 234652218 234652218 C T UGT1A10 Intron 0.37 TCGA-EE-A29E-06 2 234959612 234959612 C T SPP2 Intron 0.45 TCGA-EE-A29E-06 2 234969093 234969093 C T SPP2 Silent p.S138S 0.43 TCGA-EE-A29E-06 2 237233337 237233337 C T IQCA1 Silent p.R821R 0.53 TCGA-EE-A29E-06 2 237405839 237405839 G A IQCA1 Silent p.F101F 0.56 TCGA-EE-A29E-06 2 237489273 237489273 C T ACKR3 Silent p.F55F 0.36 TCGA-EE-A29E-06 2 237490196 237490196 G A ACKR3 Silent p.%3D 0.39 TCGA-EE-A29E-06 2 238275624 238275624 C T COL6A3 Missense_Mutation p.G1736S 0.31 probably_damaging(1) TCGA-EE-A29E-06 2 238277429 238277429 G A COL6A3 Silent p.F1559F 0.39 TCGA-EE-A29E-06 2 238628209 238628209 C T LRRFIP1 Missense_Mutation p.S66L 0.37 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A29E-06 2 238939237 238939237 C T UBE2F Missense_Mutation p.P132S 0.57 deleterious(0) possibly_damaging(0.803) TCGA-EE-A29E-06 2 239162201 239162201 G A PER2 Silent p.P821P 0.45 TCGA-EE-A29E-06 2 239167210 239167210 G A PER2 Missense_Mutation p.P568L 0.37 tolerated(0.07) benign(0.113) TCGA-EE-A29E-06 2 239168678 239168678 C T PER2 Missense_Mutation p.G520D 0.33 tolerated(0.21) possibly_damaging(0.548) TCGA-EE-A29E-06 2 239168679 239168679 C T PER2 Missense_Mutation p.G520S 0.33 tolerated(0.64) benign(0.026) TCGA-EE-A29E-06 2 240056275 240056275 G A HDAC4 Missense_Mutation p.S348L 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29E-06 2 241078729 241078729 G A OTOS Missense_Mutation p.S43F 0.29 deleterious(0) probably_damaging(0.974) TCGA-EE-A29E-06 2 24110840 24110840 G A ATAD2B Missense_Mutation p.P145L 0.25 deleterious_low_confidence(0.03) benign(0.023) TCGA-EE-A29E-06 2 241683418 241683418 G A KIF1A Silent p.F1175F 0.37 TCGA-EE-A29E-06 2 241808728 241808728 G A AGXT Missense_Mutation p.G103R 0.36 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A29E-06 2 241815352 241815352 G A AGXT Missense_Mutation p.M259I 0.47 tolerated(0.26) benign(0.002) TCGA-EE-A29E-06 2 241830990 241830990 C T C2orf54 Silent p.G235G 0.47 TCGA-EE-A29E-06 2 241830991 241830991 C T C2orf54 Missense_Mutation p.G235E 0.47 tolerated(1) benign(0.038) TCGA-EE-A29E-06 2 242003009 242003009 G A SNED1 Missense_Mutation p.D793N 0.38 tolerated(0.36) benign(0.011) TCGA-EE-A29E-06 2 242152025 242152025 G A ANO7 Missense_Mutation p.G625E 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 242752549 242752549 G A NEU4 Missense_Mutation p.R9K 0.48 tolerated_low_confidence(0.51) possibly_damaging(0.567) TCGA-EE-A29E-06 2 242793338 242793338 C T PDCD1 Missense_Mutation p.E247K 0.37 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 2 24930085 24930085 C T NCOA1 Silent p.S582S 0.39 TCGA-EE-A29E-06 2 26357899 26357899 C T RAB10 3'UTR 0.46 TCGA-EE-A29E-06 2 26457131 26457131 G A HADHA Missense_Mutation p.P136L 0.41 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 2 27552031 27552031 G A GTF3C2 Missense_Mutation p.P666S 0.48 tolerated(0.13) benign(0.093) TCGA-EE-A29E-06 2 27606282 27606282 G A PPM1G Silent p.V384V 0.34 TCGA-EE-A29E-06 2 277050 277050 C T ACP1 Missense_Mutation p.P122S 0.32 deleterious(0.03) probably_damaging(0.912) TCGA-EE-A29E-06 2 27887052 27887052 C G SLC4A1AP Missense_Mutation p.P145A 0.33 tolerated(0.21) benign(0.001) TCGA-EE-A29E-06 2 29255833 29255833 G A FAM179A Missense_Mutation p.M682I 0.34 deleterious(0) possibly_damaging(0.869) TCGA-EE-A29E-06 2 29294859 29294859 G A C2orf71 Missense_Mutation p.P757S 0.47 tolerated(0.19) benign(0.202) TCGA-EE-A29E-06 2 29295461 29295461 G A C2orf71 Missense_Mutation p.P556L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 29366572 29366572 T A CLIP4 Intron 0.32 TCGA-EE-A29E-06 2 29386753 29386753 G A CLIP4 Missense_Mutation p.G531R 0.54 deleterious(0.03) benign(0.443) TCGA-EE-A29E-06 2 29416108 29416108 C T ALK Missense_Mutation p.M1615I 0.36 tolerated_low_confidence(0.94) benign(0) TCGA-EE-A29E-06 2 29543716 29543716 C T ALK Missense_Mutation p.E483K 0.54 deleterious(0.02) possibly_damaging(0.832) TCGA-EE-A29E-06 2 30966426 30966426 G A CAPN13 Missense_Mutation p.P423L 0.54 tolerated(0.11) possibly_damaging(0.582) TCGA-EE-A29E-06 2 31589781 31589781 C T XDH Silent p.G759G 0.41 TCGA-EE-A29E-06 2 31754414 31754414 G A AL133247.2 Intron 0.40 TCGA-EE-A29E-06 2 31756538 31756538 G A AL133247.2 Intron 0.39 TCGA-EE-A29E-06 2 32476000 32476000 T A NLRC4 Missense_Mutation p.E311D 0.44 tolerated(0.33) benign(0.122) TCGA-EE-A29E-06 2 36691732 36691732 C T CRIM1 Missense_Mutation p.P309S 0.51 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A29E-06 2 3721680 3721680 G A ALLC Missense_Mutation p.D17N 0.57 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 2 3750152 3750152 A T ALLC Nonstop_Mutation p.*392Lext*17 0.58 TCGA-EE-A29E-06 2 38201340 38201340 C T RMDN2 Missense_Mutation p.R382C 0.46 tolerated(1) benign(0) TCGA-EE-A29E-06 2 39074204 39074204 G A DHX57 Missense_Mutation p.P726S 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 2 40342548 40342548 C T SLC8A1 Missense_Mutation p.G923R 0.26 tolerated(0.07) possibly_damaging(0.752) TCGA-EE-A29E-06 2 40655722 40655722 G A SLC8A1 Nonsense_Mutation p.R567* 0.33 TCGA-EE-A29E-06 2 42282532 42282532 C T PKDCC Silent p.T407T 0.26 TCGA-EE-A29E-06 2 44064986 44064986 G A ABCG5 Silent p.I84I 0.43 TCGA-EE-A29E-06 2 44145436 44145436 G A LRPPRC Missense_Mutation p.L1000F 0.44 tolerated(0.2) benign(0.101) TCGA-EE-A29E-06 2 44436387 44436387 T G PPM1B Missense_Mutation p.F295L 0.41 tolerated(0.31) benign(0.139) TCGA-EE-A29E-06 2 44513207 44513207 G A SLC3A1 Missense_Mutation p.E268K 0.39 tolerated(0.11) possibly_damaging(0.448) TCGA-EE-A29E-06 2 46985927 46985927 C T SOCS5 Silent p.I86I 0.40 TCGA-EE-A29E-06 2 47221612 47221612 C T TTC7A Silent p.A320A 0.40 TCGA-EE-A29E-06 2 47693882 47693882 C T MSH2 Silent p.V532V 0.52 TCGA-EE-A29E-06 2 48808301 48808301 C T STON1-GTF2A1L Nonsense_Mutation p.R177* 0.26 TCGA-EE-A29E-06 2 49190007 49190007 G A FSHR Silent p.A651A 0.44 TCGA-EE-A29E-06 2 49190868 49190868 G A FSHR Silent p.I364I 0.35 TCGA-EE-A29E-06 2 50724718 50724718 C T NRXN1 Missense_Mutation p.A918T 0.26 tolerated(0.4) benign(0.168) TCGA-EE-A29E-06 2 50724719 50724719 C T NRXN1 Missense_Mutation p.M917I 0.26 tolerated(0.15) benign(0.078) TCGA-EE-A29E-06 2 55920892 55920892 G A PNPT1 Silent p.L23L 0.36 TCGA-EE-A29E-06 2 56098004 56098004 G A EFEMP1 Nonsense_Mutation p.Q391* 0.32 TCGA-EE-A29E-06 2 60688199 60688199 G A BCL11A Silent p.G616G 0.39 TCGA-EE-A29E-06 2 60689273 60689273 G A BCL11A Silent p.R258R 0.48 TCGA-EE-A29E-06 2 68622982 68622982 G A PLEK 3'UTR 0.62 TCGA-EE-A29E-06 2 68873218 68873218 C T PROKR1 Missense_Mutation p.R89C 0.43 deleterious(0) probably_damaging(0.946) TCGA-EE-A29E-06 2 69043417 69043417 C T ARHGAP25 Intron 0.43 TCGA-EE-A29E-06 2 69043418 69043418 C T ARHGAP25 Intron 0.41 TCGA-EE-A29E-06 2 69093233 69093233 C T BMP10 Missense_Mutation p.E269K 0.38 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A29E-06 2 70188221 70188221 C T ASPRV1 Silent p.G200G 0.39 TCGA-EE-A29E-06 2 7023635 7023635 G A RSAD2 Silent p.L160L 0.43 TCGA-EE-A29E-06 2 70692814 70692814 G A TGFA Missense_Mutation p.S50F 0.50 deleterious(0) probably_damaging(0.992) TCGA-EE-A29E-06 2 70922898 70922898 G A ADD2 Silent p.I170I 0.53 TCGA-EE-A29E-06 2 71036469 71036469 C T CLEC4F Silent p.V568V 0.44 TCGA-EE-A29E-06 2 71043299 71043299 G A CLEC4F Missense_Mutation p.S405F 0.39 deleterious(0) probably_damaging(0.982) TCGA-EE-A29E-06 2 71219068 71219068 G A TEX261 Missense_Mutation p.P66S 0.23 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A29E-06 2 71351523 71351523 A T MCEE Missense_Mutation p.F64Y 0.34 tolerated(0.14) benign(0.401) TCGA-EE-A29E-06 2 71377037 71377037 C T MPHOSPH10 Silent p.F646F 0.44 TCGA-EE-A29E-06 2 71591276 71591276 C T ZNF638 Silent p.S537S 0.49 TCGA-EE-A29E-06 2 71661972 71661972 T G ZNF638 3'UTR 0.34 TCGA-EE-A29E-06 2 71825770 71825770 G A DYSF Nonsense_Mutation p.W1217* 0.39 TCGA-EE-A29E-06 2 73957719 73957719 G A TPRKB Missense_Mutation p.P137S 0.35 tolerated(0.69) benign(0.002) TCGA-EE-A29E-06 2 75107649 75107649 C T HK2 Missense_Mutation p.P508L 0.33 deleterious(0.01) benign(0.077) TCGA-EE-A29E-06 2 75107650 75107650 C T HK2 Silent p.P508P 0.35 TCGA-EE-A29E-06 2 76975909 76975909 C T LRRTM4 Missense_Mutation p.G562D 0.35 tolerated_low_confidence(0.78) benign(0) TCGA-EE-A29E-06 2 79386625 79386625 C T REG3A 5'UTR 0.38 TCGA-EE-A29E-06 2 80874951 80874951 C T CTNNA2 Missense_Mutation p.S891L 0.39 deleterious(0.03) possibly_damaging(0.537) TCGA-EE-A29E-06 2 84517962 84517962 G A FUNDC2P2 RNA 0.50 TCGA-EE-A29E-06 2 84811345 84811345 G A DNAH6 Missense_Mutation p.E818K 0.38 deleterious(0.05) benign(0.062) TCGA-EE-A29E-06 2 88390602 88390602 C T SMYD1 Silent p.N200N 0.45 TCGA-EE-A29E-06 2 88405849 88405849 G A SMYD1 Silent p.V329V 0.37 TCGA-EE-A29E-06 2 89036049 89036049 C T RPIA Intron 0.37 TCGA-EE-A29E-06 2 89185111 89185111 C T IGKV4-1 Silent p.F8F 0.50 TCGA-EE-A29E-06 2 8933996 8933996 G A KIDINS220 Missense_Mutation p.P407L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 2 89399461 89399461 G A IGKV1-16 Missense_Mutation p.P81L 0.44 deleterious(0) probably_damaging(0.93) TCGA-EE-A29E-06 2 89416997 89416997 C T IGKV1-17 Missense_Mutation p.G63R 0.44 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A29E-06 2 89513347 89513347 G A IGKV1-27 Silent p.L12L 0.33 TCGA-EE-A29E-06 2 89976182 89976182 C T IGKV2D-30 Missense_Mutation p.S18F 0.18 deleterious(0.03) benign(0.01) TCGA-EE-A29E-06 2 90122085 90122085 G A IGKV1D-17 Silent p.Q101Q 0.29 TCGA-EE-A29E-06 2 90211735 90211735 G A IGKV3D-11 5'UTR 0.31 TCGA-EE-A29E-06 2 91843511 91843511 G A AC027612.6 RNA 0.11 TCGA-EE-A29E-06 2 9554384 9554384 G A ITGB1BP1 Missense_Mutation p.S25F 0.34 tolerated(0.17) unknown(0) TCGA-EE-A29E-06 2 95944836 95944836 G A PROM2 Silent p.E406E 0.44 TCGA-EE-A29E-06 2 97165184 97165184 G A NEURL3 Intron 0.39 TCGA-EE-A29E-06 2 97217569 97217569 T C ARID5A Missense_Mutation p.F435S 0.42 tolerated(0.41) benign(0.081) TCGA-EE-A29E-06 2 97274369 97274369 G A KANSL3 Silent p.S539S 0.24 TCGA-EE-A29E-06 2 97367693 97367693 G A LMAN2L 3'Flank 0.52 TCGA-EE-A29E-06 2 97749475 97749475 G A FAHD2B 3'UTR 0.26 TCGA-EE-A29E-06 2 99012639 99012639 G A CNGA3 Missense_Mutation p.V336I 0.46 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29E-06 2 99013247 99013247 C T CNGA3 Silent p.F538F 0.27 TCGA-EE-A29E-06 2 99860566 99860566 C T LYG2 Nonsense_Mutation p.W139* 0.43 TCGA-EE-A29E-06 3 105260559 105260559 C T ALCAM Missense_Mutation p.S314F 0.47 deleterious(0) probably_damaging(0.98) TCGA-EE-A29E-06 3 108072296 108072296 C T HHLA2 Silent p.F29F 0.46 TCGA-EE-A29E-06 3 108072364 108072364 C T HHLA2 Missense_Mutation p.S52L 0.47 tolerated(0.22) possibly_damaging(0.519) TCGA-EE-A29E-06 3 108117571 108117571 G A MYH15 Silent p.S1702S 0.41 TCGA-EE-A29E-06 3 108117583 108117583 C T MYH15 Silent p.E1698E 0.41 TCGA-EE-A29E-06 3 108135770 108135770 G A MYH15 Silent p.F1299F 0.46 TCGA-EE-A29E-06 3 108182070 108182070 A G MYH15 Silent p.G604G 0.36 TCGA-EE-A29E-06 3 108219037 108219037 C T MYH15 Missense_Mutation p.G162R 0.49 deleterious(0.03) benign(0.08) TCGA-EE-A29E-06 3 108476021 108476021 G A RETNLB Silent p.S4S 0.28 TCGA-EE-A29E-06 3 108476114 108476114 G A RETNLB 5'UTR 0.53 TCGA-EE-A29E-06 3 108751625 108751625 C T MORC1 Missense_Mutation p.E503K 0.41 tolerated(0.19) benign(0.018) TCGA-EE-A29E-06 3 108778653 108778653 C T MORC1 Missense_Mutation p.R344K 0.29 tolerated(0.23) benign(0.279) TCGA-EE-A29E-06 3 108818267 108818267 C T MORC1 Missense_Mutation p.E121K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29E-06 3 108822724 108822724 G A MORC1 Silent p.F65F 0.48 TCGA-EE-A29E-06 3 111304183 111304183 C T CD96 Silent p.I271I 0.33 TCGA-EE-A29E-06 3 111312910 111312910 G A ZBED2 Missense_Mutation p.P47S 0.43 deleterious(0.01) possibly_damaging(0.622) TCGA-EE-A29E-06 3 111688663 111688663 G C PHLDB2 Missense_Mutation p.G1148R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 112538669 112538669 G A CD200R1L Silent p.V251V 0.39 TCGA-EE-A29E-06 3 112546326 112546326 C T CD200R1L Silent p.Q106Q 0.43 TCGA-EE-A29E-06 3 112738443 112738443 G A C3orf17 Missense_Mutation p.P18S 0.36 deleterious(0.01) probably_damaging(0.929) TCGA-EE-A29E-06 3 113085083 113085083 G A WDR52 Missense_Mutation p.P840S 0.39 tolerated(0.4) benign(0.012) TCGA-EE-A29E-06 3 113285303 113285303 G A SIDT1 Missense_Mutation p.E87K 0.34 tolerated(0.64) benign(0.015) TCGA-EE-A29E-06 3 113724794 113724794 G A KIAA1407 Missense_Mutation p.P477S 0.39 tolerated(0.85) benign(0.01) TCGA-EE-A29E-06 3 118621320 118621320 G A IGSF11 3'UTR 0.29 TCGA-EE-A29E-06 3 118906807 118906807 G A UPK1B Silent p.R85R 0.32 TCGA-EE-A29E-06 3 118922858 118922858 G A UPK1B 3'UTR 0.48 TCGA-EE-A29E-06 3 119101181 119101181 C T ARHGAP31 Silent p.S158S 0.40 TCGA-EE-A29E-06 3 119190292 119190292 C T POGLUT1 Missense_Mutation p.P105S 0.34 deleterious(0.04) possibly_damaging(0.802) TCGA-EE-A29E-06 3 119426309 119426309 C T MAATS1 Missense_Mutation p.S87F 0.43 deleterious(0.03) benign(0.067) TCGA-EE-A29E-06 3 119449180 119449180 G A MAATS1 Missense_Mutation p.G325E 0.51 tolerated(1) benign(0) TCGA-EE-A29E-06 3 120360505 120360505 C T HGD Silent p.G270G 0.33 TCGA-EE-A29E-06 3 120952509 120952509 C T STXBP5L Silent p.L386L 0.49 TCGA-EE-A29E-06 3 121126223 121126223 G A STXBP5L Silent p.R931R 0.32 TCGA-EE-A29E-06 3 121659234 121659234 C T SLC15A2 Missense_Mutation p.P638S 0.51 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 3 121774296 121774296 G A CD86 5'UTR 0.40 TCGA-EE-A29E-06 3 121822513 121822513 G A CD86 Silent p.E73E 0.33 TCGA-EE-A29E-06 3 121825157 121825157 T A CD86 Silent p.V171V 0.42 TCGA-EE-A29E-06 3 122003041 122003041 C T CASR Missense_Mutation p.P757L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 122060442 122060442 C T CSTA 3'UTR 0.34 TCGA-EE-A29E-06 3 122283299 122283299 C T DTX3L Missense_Mutation p.S9F 0.46 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A29E-06 3 122283300 122283300 C T DTX3L Silent p.S9S 0.48 TCGA-EE-A29E-06 3 122289444 122289444 G T DTX3L Missense_Mutation p.R693L 0.38 deleterious(0) benign(0.003) TCGA-EE-A29E-06 3 123014943 123014943 G A ADCY5 Silent p.L1017L 0.44 TCGA-EE-A29E-06 3 123634093 123634093 G A CCDC14 Missense_Mutation p.P758S 0.47 tolerated(0.46) benign(0.09) TCGA-EE-A29E-06 3 124449234 124449234 G A UMPS 5'UTR 0.51 TCGA-EE-A29E-06 3 124646518 124646518 A T MUC13 Silent p.S124S 0.37 TCGA-EE-A29E-06 3 124732113 124732113 G A HEG1 Silent p.L770L 0.36 TCGA-EE-A29E-06 3 124739768 124739768 G A HEG1 Missense_Mutation p.L374F 0.27 tolerated(0.1) benign(0.091) TCGA-EE-A29E-06 3 125874302 125874302 G A ALDH1L1 Silent p.L201L 0.38 TCGA-EE-A29E-06 3 126142440 126142440 G C CCDC37 Missense_Mutation p.K413N 0.33 deleterious(0) benign(0.001) TCGA-EE-A29E-06 3 126189788 126189788 C A ZXDC Missense_Mutation p.G407V 0.25 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 3 126191064 126191064 G A ZXDC Missense_Mutation p.S331F 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 3 127414013 127414013 G A MGLL Silent p.D207D 0.32 TCGA-EE-A29E-06 3 127441400 127441400 C T MGLL Missense_Mutation p.G91E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 127702959 127702959 C T KBTBD12 Silent p.S570S 0.35 TCGA-EE-A29E-06 3 128060226 128060226 C T EEFSEC Missense_Mutation p.H313Y 0.38 tolerated(0.73) benign(0.002) TCGA-EE-A29E-06 3 128200680 128200680 G A GATA2 Silent p.L375L 0.31 TCGA-EE-A29E-06 3 129200535 129200535 C T IFT122 Nonsense_Mutation p.Q602* 0.30 TCGA-EE-A29E-06 3 130188205 130188205 G A COL6A5 Missense_Mutation p.E2453K 0.55 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 3 130285982 130285982 G A COL6A6 Silent p.K573K 0.40 TCGA-EE-A29E-06 3 130286982 130286982 G A COL6A6 Missense_Mutation p.M645I 0.30 tolerated(0.05) probably_damaging(0.989) TCGA-EE-A29E-06 3 133331239 133331239 G A TOPBP1 Silent p.F1343F 0.33 TCGA-EE-A29E-06 3 134329145 134329145 T A KY Missense_Mutation p.E264V 0.31 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A29E-06 3 136141862 136141862 T C STAG1 Missense_Mutation p.T559A 0.36 tolerated(0.64) benign(0.003) TCGA-EE-A29E-06 3 13860868 13860868 G A WNT7A Missense_Mutation p.S208L 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 3 13916496 13916496 C T WNT7A Nonsense_Mutation p.W82* 0.16 TCGA-EE-A29E-06 3 139297869 139297869 G A NMNAT3 Silent p.I9I 0.22 TCGA-EE-A29E-06 3 140167428 140167428 G A CLSTN2 Silent p.L285L 0.43 TCGA-EE-A29E-06 3 140281662 140281662 C T CLSTN2 Missense_Mutation p.S741F 0.40 deleterious(0) possibly_damaging(0.62) TCGA-EE-A29E-06 3 140785535 140785535 C T SPSB4 Silent p.L197L 0.47 TCGA-EE-A29E-06 3 141163062 141163062 C T ZBTB38 Missense_Mutation p.S611F 0.53 deleterious(0) probably_damaging(0.942) TCGA-EE-A29E-06 3 141277785 141277785 A - RASA2 Frame_Shift_Del p.I248Lfs*4 0.37 TCGA-EE-A29E-06 3 141499437 141499437 C T GRK7 Silent p.F278F 0.26 TCGA-EE-A29E-06 3 141499482 141499482 G A GRK7 Silent p.V293V 0.48 TCGA-EE-A29E-06 3 1418760 1418760 G A CNTN6 Splice_Site p.X722_splice 0.40 TCGA-EE-A29E-06 3 141923617 141923617 G A GK5 Missense_Mutation p.H111Y 0.38 tolerated(1) possibly_damaging(0.611) TCGA-EE-A29E-06 3 14220155 14220155 C T LSM3 5'UTR 0.60 TCGA-EE-A29E-06 3 142280213 142280213 G A ATR Silent p.I407I 0.41 TCGA-EE-A29E-06 3 142402848 142402848 G A PLS1 Missense_Mutation p.E194K 0.26 deleterious(0.03) benign(0.003) TCGA-EE-A29E-06 3 142455375 142455375 G A TRPC1 Silent p.Q109Q 0.36 TCGA-EE-A29E-06 3 142496493 142496493 C T TRPC1 Nonsense_Mutation p.R218* 0.34 TCGA-EE-A29E-06 3 142773807 142773807 C T U2SURP Missense_Mutation p.P933S 0.64 tolerated(0.23) unknown(0) TCGA-EE-A29E-06 3 14535314 14535314 C T SLC6A6 3'Flank 0.32 TCGA-EE-A29E-06 3 145790401 145790401 C T PLOD2 Missense_Mutation p.E599K 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A29E-06 3 14724464 14724464 G A C3orf20 Missense_Mutation p.E82K 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29E-06 3 14731545 14731545 T G C3orf20 Missense_Mutation p.Y223D 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 3 148459740 148459740 G A AGTR1 Silent p.G306G 0.53 TCGA-EE-A29E-06 3 14861370 14861370 G A FGD5 Silent p.E264E 0.59 TCGA-EE-A29E-06 3 14861823 14861823 C T FGD5 Silent p.V415V 0.33 TCGA-EE-A29E-06 3 14863037 14863037 A G FGD5 Missense_Mutation p.Y820C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29E-06 3 150404137 150404137 C T FAM194A Silent p.K186K 0.41 TCGA-EE-A29E-06 3 150460391 150460391 G A SIAH2 Missense_Mutation p.P171L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 151056490 151056490 C T P2RY12 Silent p.R48R 0.52 TCGA-EE-A29E-06 3 151131009 151131009 C T MED12L Missense_Mutation p.P2040S 0.52 tolerated_low_confidence(0.43) benign(0.003) TCGA-EE-A29E-06 3 151154827 151154827 C T IGSF10 Missense_Mutation p.A2508T 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 3 15115695 15115695 G A ZFYVE20 Missense_Mutation p.S650F 0.39 tolerated_low_confidence(0.14) benign(0.006) TCGA-EE-A29E-06 3 151163025 151163025 C T IGSF10 Missense_Mutation p.E1582K 0.47 tolerated(0.23) benign(0.252) TCGA-EE-A29E-06 3 151164382 151164382 G A IGSF10 Silent p.F1129F 0.37 TCGA-EE-A29E-06 3 151164707 151164707 C T IGSF10 Missense_Mutation p.R1021Q 0.40 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A29E-06 3 151171421 151171421 G A IGSF10 Missense_Mutation p.R156C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 151475197 151475197 G A AADACL2 Missense_Mutation p.D341N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 151545418 151545418 C T AADAC Missense_Mutation p.P220S 0.39 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 3 15269432 15269432 C T CAPN7 Missense_Mutation p.P271L 0.38 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 3 153202397 153202397 A T C3orf79 Missense_Mutation p.T18S 0.38 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A29E-06 3 153847442 153847442 G A ARHGEF26 Silent p.Q401Q 0.34 TCGA-EE-A29E-06 3 154886527 154886527 G A MME Missense_Mutation p.G641R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 154886528 154886528 G A MME Missense_Mutation p.G641E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 155200812 155200812 C T PLCH1 Silent p.G1009G 0.25 TCGA-EE-A29E-06 3 155203269 155203269 C T PLCH1 Silent p.R958R 0.46 TCGA-EE-A29E-06 3 155271912 155271912 G A PLCH1 Silent p.F369F 0.41 TCGA-EE-A29E-06 3 160803554 160803554 T C B3GALNT1 Missense_Mutation p.H330R 0.30 deleterious(0.02) benign(0.021) TCGA-EE-A29E-06 3 160965057 160965057 C T NMD3 Missense_Mutation p.A381V 0.26 tolerated(0.17) benign(0.003) TCGA-EE-A29E-06 3 161214652 161214652 G A OTOL1 Missense_Mutation p.M19I 0.34 tolerated(0.38) unknown(0) TCGA-EE-A29E-06 3 16216934 16216934 G A GALNT15 Silent p.E92E 0.38 TCGA-EE-A29E-06 3 164757744 164757744 C T SI Silent p.T725T 0.40 TCGA-EE-A29E-06 3 164764664 164764664 C T SI Missense_Mutation p.G618R 0.42 deleterious(0) probably_damaging(0.975) TCGA-EE-A29E-06 3 164786616 164786616 A G SI Missense_Mutation p.V126A 0.40 tolerated(0.09) benign(0.01) TCGA-EE-A29E-06 3 164907220 164907220 C T SLITRK3 Missense_Mutation p.D467N 0.47 tolerated(0.66) benign(0.136) TCGA-EE-A29E-06 3 167000208 167000208 G A ZBBX Missense_Mutation p.S691L 0.39 tolerated(0.44) benign(0.045) TCGA-EE-A29E-06 3 167246850 167246850 C T WDR49 Nonsense_Mutation p.W447* 0.37 TCGA-EE-A29E-06 3 167506980 167506980 C T SERPINI1 Missense_Mutation p.P22S 0.51 tolerated(0.43) benign(0.007) TCGA-EE-A29E-06 3 168802767 168802767 G A MECOM Missense_Mutation p.S1094F 0.45 deleterious(0.02) unknown(0) TCGA-EE-A29E-06 3 168802789 168802789 G A MECOM Missense_Mutation p.H1087Y 0.43 deleterious(0) unknown(0) TCGA-EE-A29E-06 3 168812960 168812960 C T MECOM Missense_Mutation p.E852K 0.57 deleterious(0.01) possibly_damaging(0.61) TCGA-EE-A29E-06 3 168861491 168861491 C T MECOM Missense_Mutation p.D45N 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29E-06 3 170108171 170108171 C T SKIL Silent p.I530I 0.30 TCGA-EE-A29E-06 3 170198580 170198580 C T SLC7A14 Silent p.G497G 0.44 TCGA-EE-A29E-06 3 17052122 17052122 G A PLCL2 Missense_Mutation p.M302I 0.42 deleterious(0) probably_damaging(0.924) TCGA-EE-A29E-06 3 17052786 17052786 G A PLCL2 Missense_Mutation p.E524K 0.38 deleterious(0) probably_damaging(0.994) TCGA-EE-A29E-06 3 17053303 17053303 C T PLCL2 Missense_Mutation p.P696L 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 3 170800066 170800066 C T TNIK Missense_Mutation p.G1096E 0.33 deleterious(0) probably_damaging(0.981) TCGA-EE-A29E-06 3 170906561 170906561 C T TNIK Missense_Mutation p.G190E 0.53 deleterious(0) unknown(0) TCGA-EE-A29E-06 3 171392375 171392375 G A PLD1 Missense_Mutation p.S715F 0.34 tolerated(0.18) probably_damaging(0.961) TCGA-EE-A29E-06 3 172241178 172241178 C T TNFSF10 5'UTR 0.38 TCGA-EE-A29E-06 3 172351766 172351766 G A NCEH1 Silent p.I282I 0.28 TCGA-EE-A29E-06 3 17279727 17279727 G A TBC1D5 Missense_Mutation p.H506Y 0.41 tolerated_low_confidence(0.59) benign(0.001) TCGA-EE-A29E-06 3 17279728 17279728 G A TBC1D5 Silent p.S505S 0.42 TCGA-EE-A29E-06 3 17333420 17333420 C T TBC1D5 Silent p.L404L 0.34 TCGA-EE-A29E-06 3 173996672 173996672 C T NLGN1 Missense_Mutation p.A294V 0.27 tolerated(0.24) probably_damaging(0.989) TCGA-EE-A29E-06 3 175473132 175473132 C T NAALADL2 Silent p.I705I 0.38 TCGA-EE-A29E-06 3 175473133 175473133 C T NAALADL2 Missense_Mutation p.R706W 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 175521041 175521041 G A NAALADL2 3'UTR 0.37 TCGA-EE-A29E-06 3 183754282 183754282 C T HTR3D Missense_Mutation p.S167F 0.32 tolerated(0.79) benign(0.122) TCGA-EE-A29E-06 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.31 tolerated(0.6) benign(0.016) TCGA-EE-A29E-06 3 184021489 184021489 C T PSMD2 Silent p.G425G 0.41 TCGA-EE-A29E-06 3 184043486 184043486 C T EIF4G1 Intron 0.46 TCGA-EE-A29E-06 3 184295742 184295742 G A EPHB3 Missense_Mutation p.A566T 0.38 tolerated(0.07) benign(0.082) TCGA-EE-A29E-06 3 184295756 184295756 C T EPHB3 Silent p.F570F 0.38 TCGA-EE-A29E-06 3 184297596 184297596 G A EPHB3 Silent p.E682E 0.44 TCGA-EE-A29E-06 3 185146818 185146818 C T MAP3K13 Missense_Mutation p.S150F 0.47 deleterious(0.02) benign(0.328) TCGA-EE-A29E-06 3 185234906 185234906 G A LIPH Missense_Mutation p.P311S 0.41 tolerated(0.64) benign(0.1) TCGA-EE-A29E-06 3 185364881 185364881 G A IGF2BP2 Missense_Mutation p.R547C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 186257173 186257173 G A CRYGS Missense_Mutation p.R79C 0.32 tolerated(0.63) benign(0.012) TCGA-EE-A29E-06 3 186336349 186336349 G A AHSG Missense_Mutation p.E200K 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 3 186336351 186336351 G C AHSG Missense_Mutation p.E200D 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 3 186370278 186370278 G A FETUB Missense_Mutation p.G336E 0.31 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 3 186505599 186505599 G A EIF4A2 Missense_Mutation p.G336E 0.39 deleterious(0) possibly_damaging(0.713) TCGA-EE-A29E-06 3 186917918 186917918 G A RTP1 3'UTR 0.56 TCGA-EE-A29E-06 3 187386908 187386908 C T SST Missense_Mutation p.R99Q 0.40 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A29E-06 3 187416366 187416366 G A RTP2 Missense_Mutation p.R200C 0.36 deleterious(0.01) possibly_damaging(0.776) TCGA-EE-A29E-06 3 187442795 187442795 G A BCL6 Silent p.T637T 0.33 TCGA-EE-A29E-06 3 189349216 189349216 C T TP63 5'UTR 0.70 TCGA-EE-A29E-06 3 189349217 189349217 C T TP63 5'UTR 0.68 TCGA-EE-A29E-06 3 189455644 189455644 G A TP63 Missense_Mutation p.D60N 0.40 tolerated(0.62) benign(0.26) TCGA-EE-A29E-06 3 190039947 190039947 C T CLDN1 Missense_Mutation p.G17R 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 3 190039948 190039948 C T CLDN1 Silent p.L16L 0.40 TCGA-EE-A29E-06 3 191861717 191861717 G A FGF12 3'UTR 0.48 TCGA-EE-A29E-06 3 193177020 193177020 G A ATP13A4 Silent p.G508G 0.40 TCGA-EE-A29E-06 3 194080236 194080236 C T LRRC15 Missense_Mutation p.E519K 0.44 tolerated(0.64) benign(0.002) TCGA-EE-A29E-06 3 194174455 194174455 G A ATP13A3 Missense_Mutation p.S273L 0.44 deleterious(0) benign(0.143) TCGA-EE-A29E-06 3 195474187 195474187 C T MUC4 Missense_Mutation p.D5367N 0.16 benign(0.001) TCGA-EE-A29E-06 3 195516563 195516563 C T MUC4 Missense_Mutation p.E630K 0.42 unknown(0) TCGA-EE-A29E-06 3 196387622 196387622 C T NRROS Missense_Mutation p.R370W 0.29 tolerated(0.08) benign(0.017) TCGA-EE-A29E-06 3 197401437 197401437 G A KIAA0226 3'Flank 0.45 TCGA-EE-A29E-06 3 197432026 197432026 A G KIAA0226 Silent p.D80D 0.52 TCGA-EE-A29E-06 3 197765453 197765453 C T LMLN Missense_Mutation p.S665F 0.35 deleterious(0) unknown(0) TCGA-EE-A29E-06 3 23959495 23959495 C G RPL15 Missense_Mutation p.R49G 0.35 deleterious(0.02) benign(0.014) TCGA-EE-A29E-06 3 26751144 26751144 G A LRRC3B 5'UTR 0.44 TCGA-EE-A29E-06 3 26751401 26751401 C T LRRC3B Missense_Mutation p.P80S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 26751814 26751814 G A LRRC3B Silent p.V217V 0.36 TCGA-EE-A29E-06 3 27460060 27460060 A T SLC4A7 Missense_Mutation p.F517I 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 3 28476733 28476733 C T ZCWPW2 Silent p.F155F 0.48 TCGA-EE-A29E-06 3 2861227 2861227 G A CNTN4 Missense_Mutation p.G139E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 2908486 2908486 C T CNTN4 Missense_Mutation p.R169C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 3 2944560 2944560 G A CNTN4 Missense_Mutation p.D360N 0.26 tolerated(0.18) benign(0.096) TCGA-EE-A29E-06 3 29476267 29476267 C T RBMS3 Missense_Mutation p.P37S 0.40 tolerated(0.15) possibly_damaging(0.857) TCGA-EE-A29E-06 3 2967375 2967375 G A CNTN4 Missense_Mutation p.E424K 0.42 tolerated(0.09) benign(0.098) TCGA-EE-A29E-06 3 3078992 3078992 A T CNTN4 Missense_Mutation p.K691I 0.34 tolerated(0.06) benign(0.028) TCGA-EE-A29E-06 3 3081708 3081708 C T CNTN4 Intron 0.31 TCGA-EE-A29E-06 3 3146671 3146671 C T IL5RA Intron 0.46 TCGA-EE-A29E-06 3 32932809 32932809 G A TRIM71 Missense_Mutation p.D705N 0.30 tolerated(0.07) probably_damaging(0.976) TCGA-EE-A29E-06 3 35732430 35732430 G A ARPP21 Missense_Mutation p.G207R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 36545950 36545950 G A STAC Splice_Site p.X277_splice 0.38 TCGA-EE-A29E-06 3 36872703 36872703 C A TRANK1 Nonsense_Mutation p.E2747* 0.44 TCGA-EE-A29E-06 3 36873995 36873995 C T TRANK1 Missense_Mutation p.R2316K 0.45 tolerated(0.66) benign(0.027) TCGA-EE-A29E-06 3 36875010 36875010 G A TRANK1 Nonsense_Mutation p.Q1978* 0.36 TCGA-EE-A29E-06 3 36880178 36880178 A T TRANK1 Silent p.G1726G 0.41 TCGA-EE-A29E-06 3 36884166 36884166 G A TRANK1 Missense_Mutation p.P1699S 0.35 tolerated(0.07) benign(0.06) TCGA-EE-A29E-06 3 36897005 36897005 G A TRANK1 Missense_Mutation p.S1359F 0.38 deleterious(0.01) benign(0.208) TCGA-EE-A29E-06 3 36897069 36897069 G A TRANK1 Missense_Mutation p.P1338S 0.42 deleterious(0.01) possibly_damaging(0.829) TCGA-EE-A29E-06 3 38042995 38042995 C T VILL Missense_Mutation p.H411Y 0.40 tolerated(1) benign(0.028) TCGA-EE-A29E-06 3 38044760 38044760 C T VILL Silent p.F587F 0.59 TCGA-EE-A29E-06 3 38135209 38135209 G A DLEC1 Missense_Mutation p.E624K 0.39 tolerated(0.13) benign(0.283) TCGA-EE-A29E-06 3 38438647 38438647 C T XYLB Missense_Mutation p.H479Y 0.37 tolerated(0.16) benign(0.081) TCGA-EE-A29E-06 3 38597962 38597962 G A SCN5A Silent p.I1469I 0.31 TCGA-EE-A29E-06 3 38616821 38616821 G A SCN5A Silent p.I1211I 0.65 TCGA-EE-A29E-06 3 38674533 38674533 G A SCN5A Missense_Mutation p.T89I 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A29E-06 3 38738959 38738959 G A SCN10A Missense_Mutation p.P1918S 0.33 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 3 38739607 38739607 A C SCN10A Missense_Mutation p.F1702V 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 38755538 38755538 C T SCN10A Missense_Mutation p.E1239K 0.40 tolerated(0.06) benign(0.001) TCGA-EE-A29E-06 3 38768376 38768376 G A SCN10A Silent p.C936C 0.37 TCGA-EE-A29E-06 3 38768433 38768433 G A SCN10A Silent p.I917I 0.41 TCGA-EE-A29E-06 3 38797420 38797420 G A SCN10A Silent p.T440T 0.53 TCGA-EE-A29E-06 3 38892168 38892168 G A SCN11A Silent p.I1377I 0.44 TCGA-EE-A29E-06 3 38913691 38913691 C T SCN11A Missense_Mutation p.G1163E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 38936397 38936397 C T SCN11A Missense_Mutation p.G821E 0.30 deleterious(0.03) possibly_damaging(0.462) TCGA-EE-A29E-06 3 38945566 38945566 G A SCN11A Silent p.L544L 0.46 TCGA-EE-A29E-06 3 39230046 39230046 C T XIRP1 Silent p.E297E 0.45 TCGA-EE-A29E-06 3 39230253 39230253 C T XIRP1 Silent p.V228V 0.25 TCGA-EE-A29E-06 3 39307132 39307132 G A CX3CR1 Missense_Mutation p.P322L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 41795885 41795885 G A ULK4 Silent p.N763N 0.39 TCGA-EE-A29E-06 3 41841661 41841661 T C ULK4 Missense_Mutation p.H658R 0.35 deleterious(0.02) benign(0.327) TCGA-EE-A29E-06 3 41954347 41954347 G A ULK4 Missense_Mutation p.A283V 0.45 tolerated(0.18) benign(0.04) TCGA-EE-A29E-06 3 42299635 42299635 C T CCK Missense_Mutation p.M101I 0.37 deleterious(0) possibly_damaging(0.686) TCGA-EE-A29E-06 3 42727192 42727192 G A KLHL40 Missense_Mutation p.D28N 0.33 tolerated(0.5) benign(0.381) TCGA-EE-A29E-06 3 42734183 42734183 G A HHATL 3'UTR 0.38 TCGA-EE-A29E-06 3 42738351 42738351 G A HHATL Silent p.I343I 0.31 TCGA-EE-A29E-06 3 44492900 44492900 G A ZNF445 Silent p.S168S 0.38 TCGA-EE-A29E-06 3 44776715 44776715 C T ZNF501 Missense_Mutation p.H268Y 0.48 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-EE-A29E-06 3 44844348 44844348 C T KIF15 Missense_Mutation p.H518Y 0.44 tolerated(0.28) possibly_damaging(0.839) TCGA-EE-A29E-06 3 44893303 44893303 T G KIF15 Silent p.L1277L 0.40 TCGA-EE-A29E-06 3 45500238 45500238 C T LARS2 Silent p.L204L 0.38 TCGA-EE-A29E-06 3 45812838 45812838 G A SLC6A20 Missense_Mutation p.S269F 0.45 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A29E-06 3 45817373 45817373 G A SLC6A20 Silent p.L154L 0.35 TCGA-EE-A29E-06 3 45942730 45942730 G A CCR9 Silent p.Q150Q 0.50 TCGA-EE-A29E-06 3 45942944 45942944 G A CCR9 Missense_Mutation p.G222R 0.51 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A29E-06 3 46244938 46244938 G A CCR1 Silent p.I289I 0.33 TCGA-EE-A29E-06 3 46450373 46450373 C T CCRL2 Missense_Mutation p.S280F 0.37 deleterious(0.05) benign(0.275) TCGA-EE-A29E-06 3 46477634 46477634 G A LTF 3'UTR 0.52 TCGA-EE-A29E-06 3 46491348 46491348 C T LTF Silent p.R351R 0.46 TCGA-EE-A29E-06 3 46542365 46542365 G A RTP3 Silent p.V225V 0.40 TCGA-EE-A29E-06 3 46716097 46716097 G A ALS2CL Silent p.L796L 0.34 TCGA-EE-A29E-06 3 46724752 46724752 G A ALS2CL Missense_Mutation p.P326L 0.40 deleterious(0.02) possibly_damaging(0.789) TCGA-EE-A29E-06 3 46943285 46943285 C T PTH1R Silent p.V382V 0.33 TCGA-EE-A29E-06 3 46944924 46944924 C T PTH1R Silent p.P520P 0.41 TCGA-EE-A29E-06 3 4735411 4735411 G A ITPR1 Missense_Mutation p.D1408N 0.29 deleterious(0.05) probably_damaging(0.995) TCGA-EE-A29E-06 3 47385128 47385128 C T KLHL18 Silent p.S474S 0.28 TCGA-EE-A29E-06 3 47908795 47908795 G A MAP4 Missense_Mutation p.H1003Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 3 48457565 48457565 G A PLXNB1 Silent p.V1164V 0.73 TCGA-EE-A29E-06 3 48610636 48610636 G A COL7A1 Missense_Mutation p.P2229S 0.41 possibly_damaging(0.641) TCGA-EE-A29E-06 3 48613867 48613867 C T COL7A1 Missense_Mutation p.G1913D 0.43 unknown(0) TCGA-EE-A29E-06 3 48619044 48619044 G A COL7A1 Missense_Mutation p.P1582S 0.37 unknown(0) TCGA-EE-A29E-06 3 48623767 48623767 G A COL7A1 Missense_Mutation p.S1183F 0.46 unknown(0) TCGA-EE-A29E-06 3 48667391 48667391 G A SLC26A6 Silent p.F481F 0.26 TCGA-EE-A29E-06 3 49149062 49149062 G A USP19 Missense_Mutation p.P1028S 0.31 tolerated(0.99) benign(0.004) TCGA-EE-A29E-06 3 49149063 49149063 A C USP19 Silent p.L1027L 0.31 TCGA-EE-A29E-06 3 49150050 49150050 G A USP19 Missense_Mutation p.R838C 0.26 tolerated(0.05) possibly_damaging(0.532) TCGA-EE-A29E-06 3 49211794 49211794 G A KLHDC8B Missense_Mutation p.G167R 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 3 49689666 49689666 C T BSN Missense_Mutation p.P893S 0.29 unknown(0) TCGA-EE-A29E-06 3 49689667 49689667 C T BSN Missense_Mutation p.P893L 0.31 unknown(0) TCGA-EE-A29E-06 3 49690463 49690463 C T BSN Silent p.F1158F 0.47 TCGA-EE-A29E-06 3 49694020 49694020 G A BSN Missense_Mutation p.G2344D 0.48 unknown(0) TCGA-EE-A29E-06 3 49699923 49699923 C T BSN Missense_Mutation p.R3549W 0.38 unknown(0) TCGA-EE-A29E-06 3 49785288 49785288 G A IP6K1 Silent p.L62L 0.32 TCGA-EE-A29E-06 3 49898695 49898695 C T CAMKV Silent p.S160S 0.33 TCGA-EE-A29E-06 3 51266196 51266196 C T DOCK3 Silent p.F584F 0.35 TCGA-EE-A29E-06 3 51349990 51349990 G A DOCK3 Silent p.R1059R 0.32 TCGA-EE-A29E-06 3 51393678 51393678 G A DOCK3 Missense_Mutation p.E1470K 0.53 deleterious(0) benign(0.124) TCGA-EE-A29E-06 3 51895942 51895942 G A IQCF2 Silent p.Q29Q 0.49 TCGA-EE-A29E-06 3 51897418 51897418 C T IQCF2 3'UTR 0.44 TCGA-EE-A29E-06 3 51929152 51929152 C A IQCF1 Missense_Mutation p.K124N 0.38 tolerated(0.07) benign(0.004) TCGA-EE-A29E-06 3 51937301 51937301 G A IQCF1 5'UTR 0.25 TCGA-EE-A29E-06 3 52457337 52457337 C T PHF7 3'UTR 0.49 TCGA-EE-A29E-06 3 52476763 52476763 C T SEMA3G Silent p.E92E 0.41 TCGA-EE-A29E-06 3 52539154 52539154 C T STAB1 Missense_Mutation p.P505S 0.41 tolerated(0.17) benign(0.034) TCGA-EE-A29E-06 3 52546974 52546974 G A STAB1 Missense_Mutation p.R1053K 0.31 tolerated(0.07) possibly_damaging(0.874) TCGA-EE-A29E-06 3 52816197 52816198 - C ITIH1 Frame_Shift_Ins p.Q284Pfs*15 0.43 TCGA-EE-A29E-06 3 52852188 52852188 G A ITIH4 Intron 0.42 TCGA-EE-A29E-06 3 53264514 53264514 G A TKT Missense_Mutation p.P364S 0.27 deleterious(0.04) probably_damaging(1) TCGA-EE-A29E-06 3 53769521 53769521 C T CACNA1D Silent p.F934F 0.40 TCGA-EE-A29E-06 3 54537588 54537588 G A CACNA2D3 Missense_Mutation p.E151K 0.33 deleterious(0.02) benign(0.336) TCGA-EE-A29E-06 3 54905632 54905632 G A CACNA2D3 Missense_Mutation p.E565K 0.55 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29E-06 3 54958979 54958979 G A LRTM1 Missense_Mutation p.P91S 0.41 tolerated(0.17) benign(0.3) TCGA-EE-A29E-06 3 54959224 54959224 G A LRTM1 Missense_Mutation p.S9F 0.38 tolerated(0.59) benign(0.013) TCGA-EE-A29E-06 3 55052318 55052318 G A CACNA2D3 Silent p.G987G 0.35 TCGA-EE-A29E-06 3 58139106 58139106 C T FLNB Silent p.I2155I 0.43 TCGA-EE-A29E-06 3 58178531 58178531 C T DNASE1L3 Splice_Site p.X268_splice 0.32 TCGA-EE-A29E-06 3 62502278 62502278 C T CADPS Missense_Mutation p.A812T 0.41 deleterious(0) possibly_damaging(0.483) TCGA-EE-A29E-06 3 64532454 64532454 T G ADAMTS9 Silent p.R1682R 0.35 TCGA-EE-A29E-06 3 64601033 64601033 G A ADAMTS9 Silent p.F1051F 0.42 TCGA-EE-A29E-06 3 64635398 64635398 G A ADAMTS9 Missense_Mutation p.P507L 0.38 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A29E-06 3 65365218 65365218 C T MAGI1 Missense_Mutation p.E905K 0.36 tolerated(0.06) possibly_damaging(0.778) TCGA-EE-A29E-06 3 65376826 65376826 C T MAGI1 Missense_Mutation p.E803K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 3 66449435 66449435 C T LRIG1 Silent p.V397V 0.22 TCGA-EE-A29E-06 3 69360444 69360444 T A FRMD4B Missense_Mutation p.E98V 0.46 deleterious(0) possibly_damaging(0.85) TCGA-EE-A29E-06 3 71021800 71021800 G A FOXP1 Missense_Mutation p.H522Y 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29E-06 3 71247353 71247353 C T FOXP1 Silent p.Q60Q 0.23 TCGA-EE-A29E-06 3 77666791 77666791 C T ROBO2 Missense_Mutation p.P1157S 0.35 deleterious(0.01) possibly_damaging(0.641) TCGA-EE-A29E-06 3 78667144 78667144 G A ROBO1 Missense_Mutation p.P1308L 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29E-06 3 78734984 78734984 G A ROBO1 Silent p.V418V 0.57 TCGA-EE-A29E-06 3 79639009 79639009 G A ROBO1 Missense_Mutation p.S18F 0.36 deleterious_low_confidence(0.01) benign(0.008) TCGA-EE-A29E-06 3 85932460 85932460 C T CADM2 Silent p.I79I 0.29 TCGA-EE-A29E-06 3 85932485 85932485 G A CADM2 Missense_Mutation p.E88K 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 3 86028388 86028388 A C CADM2 Missense_Mutation p.I342L 0.36 tolerated(0.82) benign(0.001) TCGA-EE-A29E-06 3 86115863 86115863 C T CADM2 Missense_Mutation p.A415V 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 3 87309064 87309064 C T POU1F1 Missense_Mutation p.E312K 0.34 deleterious_low_confidence(0) possibly_damaging(0.46) TCGA-EE-A29E-06 3 88039896 88039896 G A HTR1F 5'UTR 0.36 TCGA-EE-A29E-06 3 88040444 88040444 C T HTR1F Missense_Mutation p.T182I 0.44 deleterious(0) probably_damaging(0.939) TCGA-EE-A29E-06 3 89391080 89391080 C T EPHA3 Silent p.F382F 0.49 TCGA-EE-A29E-06 3 9034620 9034620 G A SRGAP3 Missense_Mutation p.S843L 0.23 tolerated(0.38) benign(0.001) TCGA-EE-A29E-06 3 9094804 9094804 G A SRGAP3 Silent p.S410S 0.29 TCGA-EE-A29E-06 3 9543970 9543970 G A LHFPL4 Silent p.S223S 0.45 TCGA-EE-A29E-06 3 9543971 9543971 G A LHFPL4 Missense_Mutation p.S223F 0.45 deleterious(0.01) benign(0.004) TCGA-EE-A29E-06 3 96945212 96945212 G A EPHA6 Missense_Mutation p.E407K 0.37 tolerated(0.11) possibly_damaging(0.604) TCGA-EE-A29E-06 3 96962854 96962854 G A EPHA6 Silent p.L443L 0.53 TCGA-EE-A29E-06 3 97311499 97311499 C T EPHA6 Silent p.F810F 0.39 TCGA-EE-A29E-06 3 98001920 98001920 C T OR5H2 Silent p.P63P 0.37 TCGA-EE-A29E-06 3 98002107 98002107 G A OR5H2 Missense_Mutation p.D126N 0.43 deleterious(0) probably_damaging(0.97) TCGA-EE-A29E-06 3 98216596 98216596 G A OR5K2 Silent p.K24K 0.41 TCGA-EE-A29E-06 3 98241776 98241776 C T CLDND1 5'UTR 0.54 TCGA-EE-A29E-06 3 9877137 9877137 G A TTLL3 Silent p.A904A 0.39 TCGA-EE-A29E-06 3 99513301 99513301 G A COL8A1 Missense_Mutation p.E186K 0.24 tolerated(0.45) unknown(0) TCGA-EE-A29E-06 3 9952858 9952858 G A IL17RE Silent p.K342K 0.47 TCGA-EE-A29E-06 3 9972588 9972588 G A IL17RC Missense_Mutation p.D521N 0.33 tolerated(0.54) benign(0.004) TCGA-EE-A29E-06 4 100047751 100047751 C T ADH4 Missense_Mutation p.G371E 0.33 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A29E-06 4 100260777 100260777 C T ADH1C Missense_Mutation p.E354K 0.51 possibly_damaging(0.555) TCGA-EE-A29E-06 4 100340194 100340194 C T ADH7 Missense_Mutation p.D324N 0.38 tolerated(0.56) benign(0.005) TCGA-EE-A29E-06 4 100348964 100348964 G A ADH7 Missense_Mutation p.S197F 0.54 deleterious(0) possibly_damaging(0.899) TCGA-EE-A29E-06 4 100349013 100349013 C T ADH7 Missense_Mutation p.D181N 0.28 tolerated(0.12) benign(0.006) TCGA-EE-A29E-06 4 102020813 102020813 G A PPP3CA Missense_Mutation p.H151Y 0.34 deleterious(0) probably_damaging(0.991) TCGA-EE-A29E-06 4 102951356 102951356 C T BANK1 Missense_Mutation p.P612S 0.52 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 4 102993522 102993522 G A BANK1 Missense_Mutation p.E755K 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A29E-06 4 104579461 104579461 G A TACR3 Silent p.F216F 0.46 TCGA-EE-A29E-06 4 104640509 104640509 C T TACR3 Nonsense_Mutation p.W108* 0.38 TCGA-EE-A29E-06 4 104640704 104640704 T C TACR3 Silent p.Q43Q 0.53 TCGA-EE-A29E-06 4 107847025 107847025 C T DKK2 Missense_Mutation p.V102M 0.40 deleterious(0.04) benign(0.004) TCGA-EE-A29E-06 4 109672152 109672152 G A ETNPPL Missense_Mutation p.S214F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 109782121 109782121 G A COL25A1 Missense_Mutation p.R402C 0.48 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A29E-06 4 110662037 110662037 G A CFI 3'UTR 0.37 TCGA-EE-A29E-06 4 110866251 110866251 C T EGF Missense_Mutation p.L254F 0.30 tolerated(0.06) benign(0.03) TCGA-EE-A29E-06 4 111397853 111397853 G A ENPEP Missense_Mutation p.D95N 0.30 tolerated(0.22) benign(0.021) TCGA-EE-A29E-06 4 111470887 111470887 C T ENPEP Silent p.L782L 0.47 TCGA-EE-A29E-06 4 111470937 111470937 C T ENPEP Missense_Mutation p.S799L 0.42 deleterious(0.04) benign(0.049) TCGA-EE-A29E-06 4 114208808 114208808 T C ANK2 Silent p.N709N 0.42 TCGA-EE-A29E-06 4 115749015 115749015 G A NDST4 Missense_Mutation p.P859L 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A29E-06 4 118975012 118975012 C T NDST3 5'UTR 0.33 TCGA-EE-A29E-06 4 118975303 118975303 G A NDST3 Missense_Mutation p.V80I 0.35 tolerated(0.11) benign(0.007) TCGA-EE-A29E-06 4 119216939 119216939 G A PRSS12 Missense_Mutation p.S637F 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 4 119665201 119665201 G A SEC24D Missense_Mutation p.S646L 0.45 deleterious(0) probably_damaging(0.979) TCGA-EE-A29E-06 4 119951918 119951918 C T SYNPO2 Missense_Mutation p.S663L 0.38 deleterious(0.02) benign(0.207) TCGA-EE-A29E-06 4 119978599 119978599 C T SYNPO2 Missense_Mutation p.P1099L 0.25 tolerated(0.08) benign(0.006) TCGA-EE-A29E-06 4 120107163 120107163 G A MYOZ2 Missense_Mutation p.M201I 0.34 tolerated(0.46) benign(0.008) TCGA-EE-A29E-06 4 122059826 122059826 C A TNIP3 Intron 0.46 TCGA-EE-A29E-06 4 122800818 122800818 T G TRPC3 3'UTR 0.42 TCGA-EE-A29E-06 4 122853464 122853464 C T TRPC3 Missense_Mutation p.E317K 0.54 deleterious(0) possibly_damaging(0.779) TCGA-EE-A29E-06 4 123301332 123301332 C T ADAD1 Silent p.P36P 0.38 TCGA-EE-A29E-06 4 123302155 123302155 C T ADAD1 Missense_Mutation p.P61S 0.44 tolerated(0.24) benign(0.126) TCGA-EE-A29E-06 4 123534024 123534024 G A IL21 Silent p.F140F 0.32 TCGA-EE-A29E-06 4 126337621 126337621 G A FAT4 Missense_Mutation p.D2288N 0.46 probably_damaging(1) TCGA-EE-A29E-06 4 126370701 126370701 C T FAT4 Nonsense_Mutation p.R2844* 0.47 TCGA-EE-A29E-06 4 126372579 126372579 C T FAT4 Nonsense_Mutation p.R3470* 0.38 TCGA-EE-A29E-06 4 126372845 126372845 C T FAT4 Silent p.F3558F 0.30 TCGA-EE-A29E-06 4 126373646 126373646 C T FAT4 Silent p.S3825S 0.44 TCGA-EE-A29E-06 4 126401004 126401004 G A FAT4 Silent p.G4194G 0.29 TCGA-EE-A29E-06 4 126411418 126411418 G A FAT4 Missense_Mutation p.A4481T 0.42 benign(0.007) TCGA-EE-A29E-06 4 128716986 128716986 G A HSPA4L Missense_Mutation p.D77N 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 4 129792669 129792669 C T JADE1 Missense_Mutation p.P594L 0.27 tolerated(0.31) benign(0.006) TCGA-EE-A29E-06 4 129864297 129864297 G A SCLT1 Nonsense_Mutation p.Q496* 0.40 TCGA-EE-A29E-06 4 1309241 1309241 C T MAEA Silent p.I103I 0.46 TCGA-EE-A29E-06 4 1309274 1309274 C T MAEA Silent p.P114P 0.38 TCGA-EE-A29E-06 4 134084147 134084147 C T PCDH10 Missense_Mutation p.S938F 0.39 tolerated(0.1) possibly_damaging(0.877) TCGA-EE-A29E-06 4 138451044 138451044 G A PCDH18 Silent p.S733S 0.32 TCGA-EE-A29E-06 4 138451725 138451725 C T PCDH18 Silent p.E506E 0.38 TCGA-EE-A29E-06 4 138451923 138451923 C T PCDH18 Silent p.R440R 0.42 TCGA-EE-A29E-06 4 138452418 138452418 C T PCDH18 Silent p.E275E 0.55 TCGA-EE-A29E-06 4 139983201 139983201 G A ELF2 Silent p.T196T 0.30 TCGA-EE-A29E-06 4 141317334 141317334 C T CLGN Missense_Mutation p.E304K 0.38 tolerated(0.35) benign(0.141) TCGA-EE-A29E-06 4 141543662 141543662 G A TBC1D9 Missense_Mutation p.S1163F 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29E-06 4 141543919 141543919 C T TBC1D9 Silent p.E1077E 0.42 TCGA-EE-A29E-06 4 141590111 141590111 G A TBC1D9 Silent p.I516I 0.43 TCGA-EE-A29E-06 4 144459978 144459978 T A SMARCA5 Missense_Mutation p.F553I 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 4 144940417 144940417 T - GYPB Frame_Shift_Del p.L9Yfs*7 0.15 TCGA-EE-A29E-06 4 145038046 145038046 C T GYPA Silent p.T106T 0.35 TCGA-EE-A29E-06 4 145573889 145573889 C T HHIP Missense_Mutation p.P138S 0.39 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 4 145627723 145627723 C T HHIP Missense_Mutation p.P291L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 145633170 145633170 G A HHIP Missense_Mutation p.G457E 0.38 deleterious(0) benign(0.004) TCGA-EE-A29E-06 4 145916481 145916481 G A ANAPC10 3'UTR 0.42 TCGA-EE-A29E-06 4 146044633 146044633 C T ABCE1 Silent p.F507F 0.42 TCGA-EE-A29E-06 4 147561703 147561703 G A POU4F2 Missense_Mutation p.E325K 0.34 deleterious(0.05) probably_damaging(0.973) TCGA-EE-A29E-06 4 148406837 148406837 G A EDNRA Missense_Mutation p.E2K 0.34 tolerated_low_confidence(0.06) benign(0.046) TCGA-EE-A29E-06 4 148406860 148406860 C T EDNRA Silent p.S9S 0.57 TCGA-EE-A29E-06 4 148743890 148743890 C T ARHGAP10 Missense_Mutation p.A56V 0.37 deleterious(0) possibly_damaging(0.86) TCGA-EE-A29E-06 4 152679989 152679989 G A PET112 Missense_Mutation p.R88C 0.41 tolerated(0.15) benign(0.005) TCGA-EE-A29E-06 4 153253840 153253840 G A FBXW7 Missense_Mutation p.P298L 0.35 tolerated(0.1) probably_damaging(0.928) TCGA-EE-A29E-06 4 153897156 153897156 G A FHDC1 Missense_Mutation p.V905I 0.44 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A29E-06 4 154216662 154216662 C T TRIM2 Silent p.F328F 0.34 TCGA-EE-A29E-06 4 154626225 154626225 C T TLR2 Silent p.F722F 0.35 TCGA-EE-A29E-06 4 154649372 154649372 C T RNF175 Missense_Mutation p.G130R 0.35 tolerated(0.11) benign(0.057) TCGA-EE-A29E-06 4 154649452 154649452 C T RNF175 Nonsense_Mutation p.W103* 0.27 TCGA-EE-A29E-06 4 155157596 155157596 G A DCHS2 Silent p.F2281F 0.38 TCGA-EE-A29E-06 4 155163905 155163905 C T DCHS2 Missense_Mutation p.D1866N 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A29E-06 4 155243506 155243506 C T DCHS2 Missense_Mutation p.G930R 0.46 deleterious(0.03) possibly_damaging(0.789) TCGA-EE-A29E-06 4 156294331 156294331 C T MAP9 Missense_Mutation p.M146I 0.39 tolerated(0.9) benign(0.003) TCGA-EE-A29E-06 4 156632363 156632363 G A GUCY1A3 Missense_Mutation p.R349Q 0.40 deleterious(0.05) possibly_damaging(0.867) TCGA-EE-A29E-06 4 156723442 156723442 A G GUCY1B3 Intron 0.25 TCGA-EE-A29E-06 4 157689052 157689052 C T PDGFC Missense_Mutation p.R265K 0.37 tolerated(0.97) benign(0.136) TCGA-EE-A29E-06 4 158057739 158057739 G A GLRB Nonsense_Mutation p.W139* 0.36 TCGA-EE-A29E-06 4 158262426 158262426 G A GRIA2 Missense_Mutation p.G619R 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 4 159165493 159165493 G A TMEM144 Missense_Mutation p.E316K 0.43 deleterious(0) probably_damaging(0.992) TCGA-EE-A29E-06 4 160253700 160253700 C T RAPGEF2 Silent p.S501S 0.46 TCGA-EE-A29E-06 4 164394716 164394716 C T TKTL2 Missense_Mutation p.M57I 0.29 deleterious(0) probably_damaging(0.92) TCGA-EE-A29E-06 4 164466772 164466772 C T MARCH1 Missense_Mutation p.E183K 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 4 165961311 165961311 C T TRIM60 Silent p.I29I 0.44 TCGA-EE-A29E-06 4 165962177 165962177 G A TRIM60 Missense_Mutation p.R318Q 0.42 tolerated(0.53) benign(0.019) TCGA-EE-A29E-06 4 16597475 16597475 G A LDB2 Missense_Mutation p.R87C 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 16597476 16597476 G A LDB2 Silent p.P86P 0.29 TCGA-EE-A29E-06 4 166261499 166261499 C T MSMO1 Missense_Mutation p.R220C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 166385634 166385634 G A CPE Missense_Mutation p.E134K 0.44 deleterious(0.01) possibly_damaging(0.731) TCGA-EE-A29E-06 4 166964467 166964467 C T TLL1 Nonsense_Mutation p.Q474* 0.41 TCGA-EE-A29E-06 4 167810341 167810341 C T SPOCK3 Missense_Mutation p.E180K 0.44 tolerated(0.18) benign(0.314) TCGA-EE-A29E-06 4 169344861 169344861 C T DDX60L Silent p.E665E 0.31 TCGA-EE-A29E-06 4 170077708 170077708 G A SH3RF1 Silent p.Y172Y 0.40 TCGA-EE-A29E-06 4 170912661 170912661 G A MFAP3L Silent p.T366T 0.44 TCGA-EE-A29E-06 4 174292510 174292510 C T SAP30 Silent p.A59A 0.56 TCGA-EE-A29E-06 4 174450078 174450078 T A HAND2 Missense_Mutation p.E121D 0.38 tolerated(0.28) benign(0.136) TCGA-EE-A29E-06 4 175898030 175898030 G A ADAM29 Missense_Mutation p.G452R 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 4 17805433 17805433 G A DCAF16 Missense_Mutation p.P111L 0.41 tolerated_low_confidence(0.16) probably_damaging(0.958) TCGA-EE-A29E-06 4 178897069 178897069 C T LINC01098 Missense_Mutation p.S91F 0.38 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-EE-A29E-06 4 183245250 183245250 C T TENM3 Missense_Mutation p.S26F 0.36 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-EE-A29E-06 4 183245251 183245251 C T TENM3 Silent p.S26S 0.36 TCGA-EE-A29E-06 4 183245390 183245390 G A TENM3 Missense_Mutation p.E73K 0.47 tolerated_low_confidence(0.07) possibly_damaging(0.635) TCGA-EE-A29E-06 4 183609433 183609433 C T TENM3 Missense_Mutation p.A717V 0.49 tolerated(0.31) benign(0.046) TCGA-EE-A29E-06 4 183650188 183650188 G A TENM3 Silent p.R813R 0.31 TCGA-EE-A29E-06 4 183673091 183673091 C T TENM3 Silent p.V1256V 0.42 TCGA-EE-A29E-06 4 183674674 183674674 G A TENM3 Missense_Mutation p.G1312R 0.38 deleterious(0) benign(0.052) TCGA-EE-A29E-06 4 1843241 1843241 G A LETM1 Missense_Mutation p.P143S 0.43 tolerated(0.07) benign(0.41) TCGA-EE-A29E-06 4 186380586 186380586 G A CCDC110 Silent p.L385L 0.36 TCGA-EE-A29E-06 4 186381301 186381301 C T CCDC110 Missense_Mutation p.S147N 0.36 tolerated(0.12) benign(0.073) TCGA-EE-A29E-06 4 187005059 187005059 G A TLR3 Missense_Mutation p.R740Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 187172987 187172987 G A KLKB1 Silent p.L372L 0.37 TCGA-EE-A29E-06 4 188924607 188924607 G A ZFP42 Missense_Mutation p.D216N 0.35 tolerated(0.5) benign(0.002) TCGA-EE-A29E-06 4 188924676 188924676 C T ZFP42 Missense_Mutation p.H239Y 0.55 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 4 188924786 188924786 C T ZFP42 Silent p.F275F 0.43 TCGA-EE-A29E-06 4 189020258 189020258 G A TRIML2 Silent p.V134V 0.28 TCGA-EE-A29E-06 4 189060889 189060889 C T TRIML1 Silent p.T59T 0.44 TCGA-EE-A29E-06 4 190873350 190873350 T A FRG1 Missense_Mutation p.I56N 0.34 deleterious(0) probably_damaging(0.954) TCGA-EE-A29E-06 4 20598237 20598237 C T SLIT2 Missense_Mutation p.P1174S 0.56 tolerated(0.25) probably_damaging(0.998) TCGA-EE-A29E-06 4 20620554 20620554 C T SLIT2 Silent p.F1504F 0.44 TCGA-EE-A29E-06 4 2160913 2160913 G A POLN Missense_Mutation p.P527L 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29E-06 4 23797354 23797354 C T PPARGC1A 3'UTR 0.39 TCGA-EE-A29E-06 4 24833249 24833249 G A CCDC149 Missense_Mutation p.H282Y 0.40 tolerated(0.12) possibly_damaging(0.726) TCGA-EE-A29E-06 4 25005151 25005151 C T LGI2 Silent p.R520R 0.39 TCGA-EE-A29E-06 4 25676244 25676244 C T SLC34A2 Missense_Mutation p.S484L 0.34 deleterious(0.02) possibly_damaging(0.862) TCGA-EE-A29E-06 4 25821492 25821492 A G SEL1L3 Missense_Mutation p.V454A 0.25 tolerated(0.14) benign(0.007) TCGA-EE-A29E-06 4 26487489 26487489 C T CCKAR Silent p.L132L 0.41 TCGA-EE-A29E-06 4 2906795 2906795 C T ADD1 Missense_Mutation p.S489L 0.36 tolerated(0.05) probably_damaging(0.975) TCGA-EE-A29E-06 4 3251199 3251199 G A MSANTD1 Missense_Mutation p.E84K 0.27 tolerated(0.21) possibly_damaging(0.542) TCGA-EE-A29E-06 4 36160466 36160466 G A ARAP2 Missense_Mutation p.H880Y 0.34 tolerated(1) benign(0.005) TCGA-EE-A29E-06 4 36214091 36214091 C T ARAP2 Missense_Mutation p.E354K 0.31 deleterious(0.03) benign(0.291) TCGA-EE-A29E-06 4 36230380 36230380 G A ARAP2 Silent p.S243S 0.31 TCGA-EE-A29E-06 4 38016231 38016231 C T TBC1D1 Silent p.F173F 0.45 TCGA-EE-A29E-06 4 38774959 38774959 T A TLR10 Missense_Mutation p.K751N 0.49 deleterious(0) possibly_damaging(0.723) TCGA-EE-A29E-06 4 38995416 38995416 G A TMEM156 Silent p.I187I 0.38 TCGA-EE-A29E-06 4 39308225 39308225 G A RFC1 Missense_Mutation p.S662F 0.39 deleterious(0.03) benign(0.285) TCGA-EE-A29E-06 4 39448354 39448354 T C KLB Missense_Mutation p.F670L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 4 39482590 39482590 C T LIAS 3'Flank 0.50 TCGA-EE-A29E-06 4 39871032 39871032 G A PDS5A Silent p.S829S 0.35 TCGA-EE-A29E-06 4 40119499 40119499 C T N4BP2 Missense_Mutation p.H559Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 4 40356372 40356372 G A CHRNA9 Silent p.T425T 0.42 TCGA-EE-A29E-06 4 41015685 41015685 G A APBB2 Silent p.I250I 0.41 TCGA-EE-A29E-06 4 41621241 41621241 G A LIMCH1 Missense_Mutation p.R240Q 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29E-06 4 42119748 42119748 G A BEND4 Silent p.F464F 0.62 TCGA-EE-A29E-06 4 42403085 42403085 C T SHISA3 Silent p.L112L 0.34 TCGA-EE-A29E-06 4 44177190 44177190 C T KCTD8 Missense_Mutation p.E347K 0.34 tolerated(0.11) probably_damaging(0.956) TCGA-EE-A29E-06 4 46042982 46042982 G A GABRG1 3'UTR 0.32 TCGA-EE-A29E-06 4 46252598 46252598 C T GABRA2 Missense_Mutation p.M361I 0.43 tolerated(0.66) benign(0.001) TCGA-EE-A29E-06 4 46930238 46930238 G A GABRA4 3'UTR 0.38 TCGA-EE-A29E-06 4 47408899 47408899 C T GABRB1 Nonsense_Mutation p.Q346* 0.40 TCGA-EE-A29E-06 4 47625725 47625725 C T CORIN Silent p.R801R 0.33 TCGA-EE-A29E-06 4 47647108 47647108 C T CORIN Silent p.E649E 0.37 TCGA-EE-A29E-06 4 47938433 47938433 C T CNGA1 3'UTR 0.38 TCGA-EE-A29E-06 4 47939397 47939397 C T CNGA1 Missense_Mutation p.D441N 0.38 tolerated(0.23) benign(0.399) TCGA-EE-A29E-06 4 48169925 48169925 C T TEC Missense_Mutation p.E181K 0.43 tolerated(0.65) benign(0.012) TCGA-EE-A29E-06 4 48894836 48894836 A T OCIAD2 Missense_Mutation p.F112L 0.41 tolerated(0.32) benign(0.001) TCGA-EE-A29E-06 4 48990612 48990612 C T CWH43 Silent p.F54F 0.42 TCGA-EE-A29E-06 4 55151583 55151583 T C PDGFRA Missense_Mutation p.L790P 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 55154975 55154975 C T PDGFRA Missense_Mutation p.P895L 0.32 deleterious(0.01) benign(0.307) TCGA-EE-A29E-06 4 56428590 56428590 C T PDCL2 Silent p.G184G 0.25 TCGA-EE-A29E-06 4 56726626 56726626 C T EXOC1 Silent p.S58S 0.52 TCGA-EE-A29E-06 4 57215960 57215960 G A AASDH Nonsense_Mutation p.Q653* 0.39 TCGA-EE-A29E-06 4 57522114 57522114 T A HOPX Missense_Mutation p.E36V 0.29 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-EE-A29E-06 4 57522116 57522116 C T HOPX Silent p.L35L 0.29 TCGA-EE-A29E-06 4 57842646 57842646 G A NOA1 Missense_Mutation p.S369F 0.50 deleterious(0.01) possibly_damaging(0.797) TCGA-EE-A29E-06 4 5830308 5830308 C T CRMP1 Missense_Mutation p.G571R 0.38 deleterious(0) probably_damaging(0.962) TCGA-EE-A29E-06 4 62812733 62812733 C T LPHN3 Missense_Mutation p.H773Y 0.47 tolerated(1) benign(0.009) TCGA-EE-A29E-06 4 628613 628613 G A PDE6B Missense_Mutation p.E206K 0.43 deleterious(0.02) possibly_damaging(0.641) TCGA-EE-A29E-06 4 6303634 6303634 C T WFS1 Silent p.F704F 0.33 TCGA-EE-A29E-06 4 68500030 68500030 G A UBA6 Missense_Mutation p.S648F 0.40 tolerated(0.13) benign(0.012) TCGA-EE-A29E-06 4 68606325 68606325 C T GNRHR Missense_Mutation p.G287E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 6865634 6865634 C T KIAA0232 Silent p.F1175F 0.38 TCGA-EE-A29E-06 4 69095023 69095023 C T TMPRSS11B Missense_Mutation p.E300K 0.36 tolerated(0.09) benign(0.158) TCGA-EE-A29E-06 4 69343242 69343242 C T TMPRSS11E Missense_Mutation p.P288L 0.41 tolerated(0.36) probably_damaging(0.914) TCGA-EE-A29E-06 4 69403525 69403525 G A UGT2B17 Missense_Mutation p.H471Y 0.76 deleterious(0.02) probably_damaging(0.965) TCGA-EE-A29E-06 4 69403526 69403526 G A UGT2B17 Silent p.R470R 0.76 TCGA-EE-A29E-06 4 69696690 69696690 C T UGT2B10 3'UTR 0.33 TCGA-EE-A29E-06 4 69795577 69795577 G A UGT2A3 Missense_Mutation p.S513F 0.40 tolerated(0.11) benign(0.029) TCGA-EE-A29E-06 4 69796438 69796438 C T UGT2A3 Missense_Mutation p.G377E 0.41 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 4 69796439 69796439 C T UGT2A3 Missense_Mutation p.G377R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 69817021 69817021 G A UGT2A3 Missense_Mutation p.P153L 0.44 tolerated(0.1) benign(0.168) TCGA-EE-A29E-06 4 70804900 70804900 G A CSN1S1 Missense_Mutation p.E84K 0.35 tolerated(0.07) possibly_damaging(0.801) TCGA-EE-A29E-06 4 70823080 70823080 A T CSN2 Missense_Mutation p.L196H 0.53 deleterious(0) possibly_damaging(0.472) TCGA-EE-A29E-06 4 70823160 70823160 C T CSN2 Nonsense_Mutation p.W169* 0.41 TCGA-EE-A29E-06 4 70864137 70864137 C T STATH Intron 0.35 TCGA-EE-A29E-06 4 70918796 70918796 G A HTN1 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.216) TCGA-EE-A29E-06 4 70920148 70920148 G A HTN1 Missense_Mutation p.G28E 0.20 tolerated_low_confidence(0.8) benign(0.001) TCGA-EE-A29E-06 4 71099792 71099792 C T FDCSP Missense_Mutation p.P49L 0.31 tolerated_low_confidence(0.39) possibly_damaging(0.851) TCGA-EE-A29E-06 4 71099797 71099797 C T FDCSP Missense_Mutation p.R51C 0.50 tolerated_low_confidence(0.11) possibly_damaging(0.835) TCGA-EE-A29E-06 4 71232589 71232589 C T SMR3A Missense_Mutation p.P95S 0.40 tolerated_low_confidence(0.15) unknown(0) TCGA-EE-A29E-06 4 71346675 71346675 C T MUC7 Missense_Mutation p.P72S 0.49 tolerated(0.08) possibly_damaging(0.51) TCGA-EE-A29E-06 4 71347006 71347006 C T MUC7 Missense_Mutation p.S182F 0.38 deleterious(0) unknown(0) TCGA-EE-A29E-06 4 71500179 71500179 C T ENAM Missense_Mutation p.T122I 0.47 deleterious(0.04) possibly_damaging(0.885) TCGA-EE-A29E-06 4 73013000 73013000 C T NPFFR2 Missense_Mutation p.S347L 0.34 deleterious(0.02) benign(0.403) TCGA-EE-A29E-06 4 73148898 73148898 G A ADAMTS3 Silent p.I1191I 0.47 TCGA-EE-A29E-06 4 74274503 74274503 G A ALB Missense_Mutation p.E155K 0.38 tolerated(0.38) benign(0.025) TCGA-EE-A29E-06 4 74279335 74279335 G A ALB Missense_Mutation p.D348N 0.51 deleterious(0.04) possibly_damaging(0.572) TCGA-EE-A29E-06 4 74313315 74313315 C T AFP Missense_Mutation p.S327F 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29E-06 4 74354393 74354393 G A AFM Missense_Mutation p.E254K 0.35 deleterious(0.02) possibly_damaging(0.543) TCGA-EE-A29E-06 4 74477518 74477518 C T RASSF6 Missense_Mutation p.E31K 0.31 tolerated_low_confidence(1) benign(0) TCGA-EE-A29E-06 4 76840991 76840991 G A NAAA Intron 0.37 TCGA-EE-A29E-06 4 7725424 7725424 G A SORCS2 Missense_Mutation p.G809S 0.40 deleterious(0) possibly_damaging(0.64) TCGA-EE-A29E-06 4 77305775 77305775 G A CCDC158 Missense_Mutation p.S111L 0.29 tolerated(0.5) probably_damaging(0.974) TCGA-EE-A29E-06 4 77660022 77660022 C T SHROOM3 Silent p.Y232Y 0.33 TCGA-EE-A29E-06 4 77661937 77661937 G A SHROOM3 Missense_Mutation p.A871T 0.44 tolerated(0.29) benign(0.003) TCGA-EE-A29E-06 4 77691792 77691792 G A SHROOM3 Missense_Mutation p.G1788E 0.57 tolerated(0.26) benign(0.232) TCGA-EE-A29E-06 4 79367949 79367949 G A FRAS1 Silent p.V1975V 0.38 TCGA-EE-A29E-06 4 80246801 80246801 C T NAA11 Silent p.V77V 0.34 TCGA-EE-A29E-06 4 80828561 80828561 T A ANTXR2 3'UTR 0.51 TCGA-EE-A29E-06 4 81188066 81188066 G A FGF5 Missense_Mutation p.G30R 0.56 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29E-06 4 83375878 83375878 C T ENOPH1 Silent p.F131F 0.40 TCGA-EE-A29E-06 4 8390952 8390952 G A ACOX3 Silent p.I495I 0.55 TCGA-EE-A29E-06 4 84511401 84511401 C T AGPAT9 Missense_Mutation p.P232S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 85694006 85694006 C T WDFY3 Missense_Mutation p.E1611K 0.48 tolerated(0.57) benign(0.186) TCGA-EE-A29E-06 4 85715819 85715819 G A WDFY3 Missense_Mutation p.P1114S 0.45 tolerated(0.17) benign(0.004) TCGA-EE-A29E-06 4 85742315 85742315 G A WDFY3 Missense_Mutation p.L505F 0.40 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A29E-06 4 86985432 86985432 G A MAPK10 Missense_Mutation p.A366V 0.46 tolerated(0.18) benign(0.018) TCGA-EE-A29E-06 4 87749254 87749254 C T SLC10A6 Missense_Mutation p.G218E 0.41 tolerated(0.29) benign(0.01) TCGA-EE-A29E-06 4 88727328 88727328 G A IBSP Missense_Mutation p.E80K 0.35 tolerated(0.05) probably_damaging(0.968) TCGA-EE-A29E-06 4 90169400 90169400 T C GPRIN3 Missense_Mutation p.K621R 0.38 tolerated(0.07) probably_damaging(0.989) TCGA-EE-A29E-06 4 94031935 94031935 C T GRID2 Missense_Mutation p.S189F 0.42 tolerated(0.15) probably_damaging(0.974) TCGA-EE-A29E-06 4 94137989 94137989 G A GRID2 Missense_Mutation p.R297Q 0.50 tolerated(0.09) benign(0.234) TCGA-EE-A29E-06 4 94693290 94693290 G A GRID2 Missense_Mutation p.D889N 0.35 deleterious_low_confidence(0) benign(0.067) TCGA-EE-A29E-06 4 96070058 96070058 G A BMPR1B Silent p.R442R 0.35 TCGA-EE-A29E-06 4 96761747 96761747 G A PDHA2 Missense_Mutation p.G149E 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 4 9784716 9784716 A G DRD5 Missense_Mutation p.N355D 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 4 9784938 9784938 G A DRD5 Missense_Mutation p.E429K 0.45 tolerated(0.11) benign(0.118) TCGA-EE-A29E-06 4 9785024 9785024 G A DRD5 Silent p.L457L 0.44 TCGA-EE-A29E-06 5 100231398 100231398 C T ST8SIA4 Missense_Mutation p.E69K 0.65 benign(0.008) TCGA-EE-A29E-06 5 101572556 101572556 C T SLCO4C1 3'UTR 0.76 TCGA-EE-A29E-06 5 111071187 111071187 G A NREP Silent p.L51L 0.72 TCGA-EE-A29E-06 5 111594984 111594984 C T EPB41L4A Missense_Mutation p.R246Q 0.69 deleterious(0) possibly_damaging(0.757) TCGA-EE-A29E-06 5 112178327 112178327 C T APC Missense_Mutation p.P2346S 0.69 probably_damaging(1) TCGA-EE-A29E-06 5 115249116 115249116 C T AP3S1 Missense_Mutation p.P171S 0.22 tolerated_low_confidence(0.13) benign(0.176) TCGA-EE-A29E-06 5 115249169 115249169 C T AP3S1 Silent p.N188N 0.23 TCGA-EE-A29E-06 5 118274914 118274914 G A DTWD2 Silent p.I127I 0.68 TCGA-EE-A29E-06 5 121188116 121188116 G A FTMT Nonsense_Mutation p.W153* 0.72 TCGA-EE-A29E-06 5 121786525 121786525 A C SNCAIP Missense_Mutation p.E661D 0.69 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A29E-06 5 1219161 1219161 C T SLC6A19 Silent p.V439V 0.38 TCGA-EE-A29E-06 5 1221377 1221377 C T SLC6A19 Silent p.F550F 0.35 TCGA-EE-A29E-06 5 1232356 1232356 C T SLC6A18 Silent p.V61V 0.26 TCGA-EE-A29E-06 5 126172025 126172025 C T LMNB1 3'UTR 0.39 TCGA-EE-A29E-06 5 127713525 127713525 C T FBN2 Missense_Mutation p.R590Q 0.67 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29E-06 5 131877530 131877530 C T IL5 Missense_Mutation p.M126I 0.76 tolerated(1) benign(0.001) TCGA-EE-A29E-06 5 135692968 135692968 C T TRPC7 Silent p.K36K 0.65 TCGA-EE-A29E-06 5 13717498 13717498 C T DNAH5 Missense_Mutation p.E4211K 0.41 possibly_damaging(0.635) TCGA-EE-A29E-06 5 13729617 13729617 G A DNAH5 Silent p.I3938I 0.40 TCGA-EE-A29E-06 5 13735964 13735964 G A DNAH5 Missense_Mutation p.R3845C 0.39 possibly_damaging(0.689) TCGA-EE-A29E-06 5 137426798 137426798 C T WNT8A 3'UTR 0.71 TCGA-EE-A29E-06 5 13753442 13753442 C T DNAH5 Missense_Mutation p.G3591E 0.37 probably_damaging(0.982) TCGA-EE-A29E-06 5 13753638 13753638 C T DNAH5 Missense_Mutation p.A3526T 0.45 possibly_damaging(0.787) TCGA-EE-A29E-06 5 137802462 137802462 C T EGR1 Silent p.I108I 0.64 TCGA-EE-A29E-06 5 13786458 13786458 C T DNAH5 Missense_Mutation p.E2884K 0.56 benign(0.292) TCGA-EE-A29E-06 5 13814719 13814719 G A DNAH5 Missense_Mutation p.L2409F 0.47 possibly_damaging(0.587) TCGA-EE-A29E-06 5 13841216 13841216 C T DNAH5 Missense_Mutation p.M1836I 0.31 benign(0.019) TCGA-EE-A29E-06 5 13885242 13885242 C T DNAH5 Missense_Mutation p.E947K 0.45 benign(0.292) TCGA-EE-A29E-06 5 13911582 13911582 C T DNAH5 Silent p.K519K 0.09 TCGA-EE-A29E-06 5 13914692 13914692 G A DNAH5 Silent p.S419S 0.38 TCGA-EE-A29E-06 5 139494291 139494291 C T PURA Silent p.N175N 0.63 TCGA-EE-A29E-06 5 140167376 140167376 G A PCDHA1 Missense_Mutation p.E501K 0.78 deleterious_low_confidence(0.03) possibly_damaging(0.492) TCGA-EE-A29E-06 5 140188073 140188073 C T PCDHA4 Missense_Mutation p.S434L 0.77 deleterious_low_confidence(0.04) possibly_damaging(0.783) TCGA-EE-A29E-06 5 140202091 140202091 C T PCDHA5 Missense_Mutation p.S244F 0.69 tolerated_low_confidence(0.05) benign(0.041) TCGA-EE-A29E-06 5 140203180 140203180 C T PCDHA5 Missense_Mutation p.S607L 0.70 tolerated_low_confidence(0.05) possibly_damaging(0.511) TCGA-EE-A29E-06 5 140346622 140346622 G A PCDHAC2 Missense_Mutation p.E91K 0.71 tolerated(0.06) possibly_damaging(0.507) TCGA-EE-A29E-06 5 140362110 140362110 C T PCDHAC1 Missense_Mutation p.P848L 0.68 tolerated(0.37) benign(0.014) TCGA-EE-A29E-06 5 140432677 140432677 C T PCDHB1 Missense_Mutation p.S541L 0.70 deleterious(0) benign(0.16) TCGA-EE-A29E-06 5 140559298 140559298 C T PCDHB8 Silent p.F561F 0.50 TCGA-EE-A29E-06 5 140559711 140559711 C A PCDHB8 Missense_Mutation p.S699Y 0.58 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A29E-06 5 140564327 140564327 C T PCDHB16 Silent p.P731P 0.72 TCGA-EE-A29E-06 5 140573706 140573706 C T PCDHB10 Silent p.F527F 0.23 TCGA-EE-A29E-06 5 140588741 140588741 G A PCDHB12 Missense_Mutation p.E88K 0.72 deleterious_low_confidence(0.03) benign(0.213) TCGA-EE-A29E-06 5 140603833 140603833 C T PCDHB14 Silent p.P252P 0.63 TCGA-EE-A29E-06 5 140605429 140605429 G A PCDHB14 Silent p.G784G 0.60 TCGA-EE-A29E-06 5 140711275 140711275 G A PCDHGA1 Missense_Mutation p.D342N 0.69 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A29E-06 5 140720749 140720749 C A PCDHGA2 Missense_Mutation p.S737R 0.75 deleterious_low_confidence(0) benign(0.004) TCGA-EE-A29E-06 5 140730113 140730113 A T PCDHGB1 Nonsense_Mutation p.K96* 0.62 TCGA-EE-A29E-06 5 140750737 140750737 C T PCDHGB3 Missense_Mutation p.S259F 0.64 tolerated(0.14) probably_damaging(0.953) TCGA-EE-A29E-06 5 140784598 140784598 C T PCDHGA9 Silent p.L693L 0.73 TCGA-EE-A29E-06 5 140870568 140870568 C A PCDHGC5 Silent p.S587S 0.82 TCGA-EE-A29E-06 5 141059732 141059732 G A ARAP3 Missense_Mutation p.P108S 0.75 tolerated(0.16) benign(0.002) TCGA-EE-A29E-06 5 145252411 145252411 C T GRXCR2 Missense_Mutation p.E41K 0.58 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 5 147051353 147051353 C T JAKMIP2 Missense_Mutation p.R6Q 0.59 deleterious(0) probably_damaging(0.964) TCGA-EE-A29E-06 5 147051361 147051361 C T JAKMIP2 Silent p.K3K 0.61 TCGA-EE-A29E-06 5 149435821 149435821 C T CSF1R Silent p.R801R 0.64 TCGA-EE-A29E-06 5 149453025 149453025 C T CSF1R Silent p.Q307Q 0.62 TCGA-EE-A29E-06 5 150924778 150924778 C T FAT2 Silent p.Q1970Q 0.61 TCGA-EE-A29E-06 5 151777638 151777638 G A NMUR2 Missense_Mutation p.S265L 0.68 tolerated(0.07) possibly_damaging(0.542) TCGA-EE-A29E-06 5 153085554 153085554 G A GRIA1 Missense_Mutation p.E594K 0.66 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 5 153144107 153144107 C T GRIA1 Missense_Mutation p.P656L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 153181972 153181972 C T GRIA1 Silent p.I824I 0.58 TCGA-EE-A29E-06 5 153382520 153382520 T A FAM114A2 Missense_Mutation p.T335S 0.64 tolerated(0.56) benign(0.003) TCGA-EE-A29E-06 5 154393517 154393517 C T KIF4B Missense_Mutation p.S33F 0.72 deleterious(0) benign(0.403) TCGA-EE-A29E-06 5 154396832 154396832 C T KIF4B Missense_Mutation p.S1138F 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.707) TCGA-EE-A29E-06 5 156476147 156476147 G A HAVCR1 Missense_Mutation p.S228L 0.73 tolerated(0.18) possibly_damaging(0.765) TCGA-EE-A29E-06 5 156589728 156589728 C T FAM71B Silent p.G516G 0.71 TCGA-EE-A29E-06 5 156592958 156592958 G A FAM71B Silent p.I74I 0.65 TCGA-EE-A29E-06 5 161117250 161117250 G A GABRA6 Silent p.K239K 0.67 TCGA-EE-A29E-06 5 161580307 161580307 G A GABRG2 Missense_Mutation p.R494Q 0.75 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29E-06 5 161969 161969 C T PLEKHG4B Silent p.F497F 0.33 TCGA-EE-A29E-06 5 168096814 168096814 C T SLIT3 Missense_Mutation p.G1437D 0.43 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A29E-06 5 168111062 168111062 C T SLIT3 Missense_Mutation p.G1199R 0.70 deleterious(0) probably_damaging(0.938) TCGA-EE-A29E-06 5 168201309 168201309 G A SLIT3 Missense_Mutation p.S409F 0.65 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 168233482 168233482 G A SLIT3 Missense_Mutation p.P302S 0.72 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 5 169506040 169506040 C T DOCK2 Missense_Mutation p.P1686S 0.66 tolerated(0.87) benign(0.002) TCGA-EE-A29E-06 5 169533036 169533036 C T FOXI1 Silent p.P25P 0.58 TCGA-EE-A29E-06 5 169805857 169805857 C T KCNMB1 Missense_Mutation p.E143K 0.78 tolerated(0.09) possibly_damaging(0.823) TCGA-EE-A29E-06 5 170345783 170345783 C T RANBP17 Nonsense_Mutation p.Q341* 0.70 TCGA-EE-A29E-06 5 172324024 172324024 C T ERGIC1 Silent p.L34L 0.61 TCGA-EE-A29E-06 5 172447761 172447761 C T ATP6V0E1 Intron 0.69 TCGA-EE-A29E-06 5 174869078 174869078 G A DRD1 Missense_Mutation p.S342L 0.67 tolerated(0.12) possibly_damaging(0.905) TCGA-EE-A29E-06 5 175992384 175992384 C T CDHR2 Missense_Mutation p.L11F 0.57 tolerated(0.12) benign(0.059) TCGA-EE-A29E-06 5 176002428 176002428 G A CDHR2 Splice_Site p.X256_splice 0.62 TCGA-EE-A29E-06 5 176016609 176016609 G A CDHR2 Silent p.A1066A 0.47 TCGA-EE-A29E-06 5 176053500 176053500 C T SNCB Missense_Mutation p.E61K 0.64 deleterious(0) possibly_damaging(0.72) TCGA-EE-A29E-06 5 176084732 176084732 C T TSPAN17 3'UTR 0.66 TCGA-EE-A29E-06 5 176314602 176314602 C T HK3 Missense_Mutation p.E484K 0.56 tolerated(0.12) benign(0.028) TCGA-EE-A29E-06 5 176518729 176518729 C T FGFR4 Missense_Mutation p.P216L 0.77 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 5 176931477 176931477 G A DOK3 Missense_Mutation p.S333F 1.00 deleterious(0.01) possibly_damaging(0.51) TCGA-EE-A29E-06 5 179251261 179251261 G A SQSTM1 Missense_Mutation p.G204E 0.64 tolerated(0.27) benign(0.094) TCGA-EE-A29E-06 5 180051016 180051016 C T FLT4 Nonsense_Mutation p.W489* 0.71 TCGA-EE-A29E-06 5 180056296 180056296 G A FLT4 Silent p.I316I 0.82 TCGA-EE-A29E-06 5 180326357 180326357 C T BTNL8 Missense_Mutation p.S16L 0.75 deleterious(0) unknown(0) TCGA-EE-A29E-06 5 180374560 180374560 G A BTNL8 Missense_Mutation p.G241E 0.74 deleterious(0.03) possibly_damaging(0.809) TCGA-EE-A29E-06 5 1879657 1879657 C T IRX4 Missense_Mutation p.E233K 0.44 tolerated(0.12) benign(0.011) TCGA-EE-A29E-06 5 19838955 19838955 G A CDH18 Silent p.V47V 0.43 TCGA-EE-A29E-06 5 21752007 21752007 C T CDH12 Missense_Mutation p.E742K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 21817074 21817074 C T CDH12 Missense_Mutation p.G328R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 23527151 23527151 C T PRDM9 Missense_Mutation p.L652F 0.26 tolerated(0.05) possibly_damaging(0.903) TCGA-EE-A29E-06 5 24491695 24491695 G A CDH10 Silent p.I622I 0.45 TCGA-EE-A29E-06 5 24593471 24593471 C T CDH10 Silent p.R43R 0.33 TCGA-EE-A29E-06 5 26881298 26881298 G A CDH9 Missense_Mutation p.R773C 0.30 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A29E-06 5 26889965 26889965 C T CDH9 Missense_Mutation p.E498K 0.14 deleterious(0.02) possibly_damaging(0.829) TCGA-EE-A29E-06 5 26903769 26903769 C T CDH9 Missense_Mutation p.E326K 0.43 deleterious(0.03) benign(0.01) TCGA-EE-A29E-06 5 26906079 26906079 C T CDH9 Missense_Mutation p.R267Q 0.40 deleterious(0.02) benign(0.033) TCGA-EE-A29E-06 5 26988489 26988489 C T CDH9 Intron 0.36 TCGA-EE-A29E-06 5 2752787 2752787 C T C5orf38 Silent p.L84L 0.09 TCGA-EE-A29E-06 5 31267718 31267718 T C CDH6 Silent p.N46N 0.08 TCGA-EE-A29E-06 5 31305390 31305390 T C CDH6 Missense_Mutation p.V370A 0.33 deleterious(0) benign(0.151) TCGA-EE-A29E-06 5 33576786 33576786 C T ADAMTS12 Silent p.S1115S 0.35 TCGA-EE-A29E-06 5 34937696 34937696 C T DNAJC21 Missense_Mutation p.A235V 0.37 tolerated(0.31) benign(0.008) TCGA-EE-A29E-06 5 35047941 35047941 G A AGXT2 Silent p.P19P 0.09 TCGA-EE-A29E-06 5 35065964 35065964 C T PRLR Missense_Mutation p.E366K 0.39 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A29E-06 5 35659301 35659301 C T SPEF2 Nonsense_Mutation p.R387* 0.36 TCGA-EE-A29E-06 5 35814644 35814644 G A SPEF2 Missense_Mutation p.E1820K 0.38 deleterious_low_confidence(0.01) benign(0.339) TCGA-EE-A29E-06 5 35867441 35867441 C T IL7R Silent p.F85F 0.39 TCGA-EE-A29E-06 5 35875626 35875626 C T IL7R Silent p.I271I 0.50 TCGA-EE-A29E-06 5 35910100 35910100 T A CAPSL Silent p.I131I 0.38 TCGA-EE-A29E-06 5 36037922 36037922 C T UGT3A2 Missense_Mutation p.M424I 0.30 tolerated(0.3) benign(0.219) TCGA-EE-A29E-06 5 36049382 36049382 G A UGT3A2 Missense_Mutation p.P151L 0.39 tolerated(0.37) benign(0.008) TCGA-EE-A29E-06 5 36142664 36142664 G A LMBRD2 Missense_Mutation p.S71L 0.40 tolerated(0.36) benign(0.124) TCGA-EE-A29E-06 5 36984971 36984971 C A NIPBL Silent p.S563S 0.09 TCGA-EE-A29E-06 5 38370452 38370452 C T EGFLAM Silent p.S200S 0.47 TCGA-EE-A29E-06 5 38370519 38370519 G A EGFLAM Missense_Mutation p.G223S 0.29 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-EE-A29E-06 5 38407025 38407025 C T EGFLAM Silent p.L308L 0.41 TCGA-EE-A29E-06 5 38407156 38407156 G A EGFLAM Missense_Mutation p.C352Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 5 38418293 38418293 G A EGFLAM Silent p.V540V 0.43 TCGA-EE-A29E-06 5 38481702 38481702 C T LIFR Missense_Mutation p.D1097N 0.43 deleterious(0) probably_damaging(0.984) TCGA-EE-A29E-06 5 38869153 38869153 C A OSMR Missense_Mutation p.L3I 0.43 tolerated(0.27) unknown(0) TCGA-EE-A29E-06 5 39119071 39119071 C T FYB Missense_Mutation p.G779E 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 5 39375143 39375143 G A DAB2 Missense_Mutation p.P764L 0.45 deleterious(0) benign(0.24) TCGA-EE-A29E-06 5 39377003 39377003 G A DAB2 Missense_Mutation p.P629L 0.40 tolerated(0.17) benign(0.003) TCGA-EE-A29E-06 5 40681542 40681542 C T PTGER4 Silent p.L149L 0.46 TCGA-EE-A29E-06 5 40835322 40835322 G A RPL37 5'UTR 0.32 TCGA-EE-A29E-06 5 40955600 40955600 G A C7 Missense_Mutation p.R402Q 0.36 tolerated(0.09) benign(0.135) TCGA-EE-A29E-06 5 41000375 41000375 C T MROH2B Missense_Mutation p.D1477N 0.39 tolerated(0.15) benign(0.043) TCGA-EE-A29E-06 5 41052635 41052635 C T MROH2B Missense_Mutation p.E388K 0.45 deleterious(0.01) possibly_damaging(0.8) TCGA-EE-A29E-06 5 41064653 41064653 G A MROH2B Silent p.F127F 0.27 TCGA-EE-A29E-06 5 41159322 41159322 G A C6 Missense_Mutation p.S573F 0.48 deleterious(0.03) benign(0.089) TCGA-EE-A29E-06 5 41181500 41181500 A T C6 Missense_Mutation p.N296K 0.39 tolerated(0.42) benign(0.01) TCGA-EE-A29E-06 5 41195936 41195936 C T C6 Missense_Mutation p.R182Q 0.38 tolerated(0.1) benign(0.106) TCGA-EE-A29E-06 5 41203209 41203209 C T C6 Missense_Mutation p.G42R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 41382494 41382494 C T PLCXD3 Missense_Mutation p.M82I 0.35 tolerated(0.19) benign(0.005) TCGA-EE-A29E-06 5 41801134 41801134 G A OXCT1 Silent p.L363L 0.33 TCGA-EE-A29E-06 5 42801031 42801031 C T SEPP1 Missense_Mutation p.G313R 0.43 tolerated_low_confidence(0.06) probably_damaging(0.988) TCGA-EE-A29E-06 5 45262428 45262428 C T HCN1 Silent p.Q756Q 0.39 TCGA-EE-A29E-06 5 45303941 45303941 C T HCN1 Missense_Mutation p.E460K 0.37 deleterious(0) probably_damaging(0.975) TCGA-EE-A29E-06 5 45462053 45462053 G A HCN1 Silent p.I302I 0.48 TCGA-EE-A29E-06 5 480158 480158 C T SLC9A3 Intron 0.48 TCGA-EE-A29E-06 5 49706728 49706728 C T EMB Missense_Mutation p.G152E 0.59 deleterious(0) probably_damaging(0.987) TCGA-EE-A29E-06 5 54403740 54403740 G A GZMA Missense_Mutation p.E112K 0.74 tolerated(0.1) benign(0.171) TCGA-EE-A29E-06 5 54565332 54565332 G A DHX29 Missense_Mutation p.P1068L 0.68 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 5 54646762 54646762 C T SKIV2L2 Missense_Mutation p.P446S 0.77 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 56542231 56542231 C T GPBP1 Missense_Mutation p.P202S 0.61 tolerated(0.51) benign(0.02) TCGA-EE-A29E-06 5 63256842 63256842 C T HTR1A Silent p.K235K 0.71 TCGA-EE-A29E-06 5 6620225 6620225 G A NSUN2 Missense_Mutation p.P270L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 5 677968 677968 C T TPPP Missense_Mutation p.E70K 0.39 tolerated(0.05) possibly_damaging(0.746) TCGA-EE-A29E-06 5 68665385 68665385 G A TAF9 Intron 0.70 TCGA-EE-A29E-06 5 68902950 68902950 G A RP11-848G14.2 RNA 0.28 TCGA-EE-A29E-06 5 70766290 70766290 C T BDP1 Missense_Mutation p.P330S 0.72 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 5 71634538 71634538 C T PTCD2 Silent p.F243F 0.70 TCGA-EE-A29E-06 5 71739960 71739960 C T ZNF366 Missense_Mutation p.E620K 0.73 tolerated_low_confidence(0.05) benign(0.25) TCGA-EE-A29E-06 5 72469265 72469265 C T TMEM174 Silent p.V65V 0.74 TCGA-EE-A29E-06 5 74848301 74848301 C T POLK Missense_Mutation p.S47F 0.56 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 5 76357579 76357579 G A AGGF1 Nonsense_Mutation p.W632* 0.66 TCGA-EE-A29E-06 5 7817040 7817040 G A ADCY2 Missense_Mutation p.G982E 0.36 tolerated(0.31) benign(0.156) TCGA-EE-A29E-06 5 7817041 7817041 G T ADCY2 Silent p.G982G 0.37 TCGA-EE-A29E-06 5 78350118 78350118 C T DMGDH Silent p.R143R 0.85 TCGA-EE-A29E-06 5 78692726 78692726 C T HOMER1 Missense_Mutation p.E266K 0.90 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 5 79025195 79025195 C T CMYA5 Missense_Mutation p.P203S 0.63 possibly_damaging(0.857) TCGA-EE-A29E-06 5 79034797 79034797 C T CMYA5 Silent p.V3403V 0.82 TCGA-EE-A29E-06 5 79034938 79034938 C T CMYA5 Silent p.V3450V 0.60 TCGA-EE-A29E-06 5 80643675 80643675 G C ACOT12 Missense_Mutation p.P191A 0.68 deleterious(0) possibly_damaging(0.896) TCGA-EE-A29E-06 5 80643676 80643676 G A ACOT12 Silent p.L190L 0.68 TCGA-EE-A29E-06 5 82360863 82360863 G A TMEM167A Missense_Mutation p.S26F 0.72 deleterious(0.04) benign(0.341) TCGA-EE-A29E-06 5 82818080 82818080 C T VCAN Missense_Mutation p.H1319Y 0.60 deleterious(0.02) benign(0.168) TCGA-EE-A29E-06 5 82838036 82838036 C T VCAN Silent p.L3072L 0.60 TCGA-EE-A29E-06 5 83239159 83239159 C T EDIL3 3'UTR 0.82 TCGA-EE-A29E-06 5 865553 865553 A T BRD9 Missense_Mutation p.S557T 0.23 deleterious(0.01) benign(0.125) TCGA-EE-A29E-06 5 865593 865593 G A BRD9 Silent p.G543G 0.41 TCGA-EE-A29E-06 5 89986685 89986685 C T GPR98 Nonsense_Mutation p.R2260* 0.69 TCGA-EE-A29E-06 5 90020760 90020760 C T GPR98 Missense_Mutation p.S3287L 0.73 benign(0.003) TCGA-EE-A29E-06 5 90052350 90052350 G A GPR98 Missense_Mutation p.G3887E 0.77 benign(0.001) TCGA-EE-A29E-06 5 90072346 90072346 C T GPR98 Silent p.I4160I 0.71 TCGA-EE-A29E-06 5 90086950 90086950 G A GPR98 Silent p.S4768S 0.43 TCGA-EE-A29E-06 5 90087065 90087065 C T GPR98 Missense_Mutation p.H4807Y 0.60 benign(0.014) TCGA-EE-A29E-06 5 90136578 90136578 C T GPR98 Missense_Mutation p.L5599F 0.62 possibly_damaging(0.86) TCGA-EE-A29E-06 5 94275873 94275873 T A MCTP1 Missense_Mutation p.K363I 0.70 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A29E-06 5 94749811 94749811 G A FAM81B Missense_Mutation p.E152K 0.76 tolerated(1) probably_damaging(0.999) TCGA-EE-A29E-06 5 9629155 9629155 G A TAS2R1 3'UTR 0.48 TCGA-EE-A29E-06 5 9629397 9629397 G A TAS2R1 Silent p.L250L 0.27 TCGA-EE-A29E-06 5 9629698 9629698 C - TAS2R1 Frame_Shift_Del p.F150Lfs*7 0.26 TCGA-EE-A29E-06 6 100395740 100395740 C T MCHR2 Missense_Mutation p.G97E 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 6 100841499 100841499 G A SIM1 Silent p.F478F 0.36 TCGA-EE-A29E-06 6 105192055 105192055 G A HACE1 Silent p.L831L 0.32 TCGA-EE-A29E-06 6 105572425 105572425 G A BVES Silent p.F215F 0.37 TCGA-EE-A29E-06 6 105609341 105609341 C T POPDC3 Silent p.G148G 0.35 TCGA-EE-A29E-06 6 106543553 106543553 G A PRDM1 Missense_Mutation p.E119K 0.41 deleterious(0) possibly_damaging(0.9) TCGA-EE-A29E-06 6 106968327 106968327 G A AIM1 Missense_Mutation p.D674N 0.41 tolerated(0.25) benign(0.004) TCGA-EE-A29E-06 6 106987353 106987353 C T AIM1 Silent p.S1190S 0.40 TCGA-EE-A29E-06 6 107956606 107956606 G A SOBP Missense_Mutation p.G853E 0.46 deleterious(0) possibly_damaging(0.889) TCGA-EE-A29E-06 6 109233635 109233635 G A ARMC2 Silent p.L408L 0.38 TCGA-EE-A29E-06 6 109233636 109233636 G T ARMC2 Nonsense_Mutation p.G409* 0.38 TCGA-EE-A29E-06 6 109468002 109468002 C T CEP57L1 Missense_Mutation p.R68C 0.48 tolerated(0.09) probably_damaging(0.952) TCGA-EE-A29E-06 6 10959021 10959021 G A SYCP2L Missense_Mutation p.R723K 0.40 tolerated(0.2) benign(0.306) TCGA-EE-A29E-06 6 10995379 10995379 G A ELOVL2 Silent p.S122S 0.36 TCGA-EE-A29E-06 6 110714218 110714218 C T DDO Silent p.E290E 0.43 TCGA-EE-A29E-06 6 110763887 110763887 G A SLC22A16 Missense_Mutation p.S248F 0.25 deleterious(0) possibly_damaging(0.832) TCGA-EE-A29E-06 6 112393209 112393209 G A TUBE1 Missense_Mutation p.P389S 0.27 tolerated(0.1) possibly_damaging(0.817) TCGA-EE-A29E-06 6 114179007 114179007 C T MARCKS Missense_Mutation p.S29F 0.47 deleterious(0) possibly_damaging(0.788) TCGA-EE-A29E-06 6 116784648 116784648 G A FAM26F Missense_Mutation p.G243D 0.39 tolerated(0.37) benign(0.232) TCGA-EE-A29E-06 6 116832945 116832945 G A FAM26E Missense_Mutation p.G29E 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 6 117113512 117113512 G A GPRC6A Silent p.S858S 0.42 TCGA-EE-A29E-06 6 117113925 117113925 G A GPRC6A Missense_Mutation p.L721F 0.48 tolerated(0.23) benign(0.03) TCGA-EE-A29E-06 6 117232120 117232120 C T RFX6 Missense_Mutation p.S232L 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 6 117244329 117244329 G A RFX6 Nonsense_Mutation p.W499* 0.47 TCGA-EE-A29E-06 6 117252551 117252551 C T RFX6 Missense_Mutation p.S890F 0.44 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-EE-A29E-06 6 117641174 117641174 C T ROS1 Missense_Mutation p.E1933K 0.41 deleterious(0) possibly_damaging(0.899) TCGA-EE-A29E-06 6 117662562 117662562 C T ROS1 Splice_Site p.X1634_splice 0.37 TCGA-EE-A29E-06 6 117662563 117662563 C T ROS1 Silent p.K1634K 0.38 TCGA-EE-A29E-06 6 117674156 117674156 G A ROS1 Missense_Mutation p.P1440S 0.33 deleterious(0) probably_damaging(0.989) TCGA-EE-A29E-06 6 117674323 117674323 G C ROS1 Missense_Mutation p.T1384S 0.29 tolerated(0.74) benign(0.008) TCGA-EE-A29E-06 6 117710795 117710795 G A ROS1 Missense_Mutation p.R493C 0.38 deleterious(0.02) benign(0.224) TCGA-EE-A29E-06 6 119245183 119245183 A C MCM9 Silent p.V138V 0.39 TCGA-EE-A29E-06 6 119511042 119511042 C T MAN1A1 Missense_Mutation p.E445K 0.32 tolerated(0.07) benign(0.333) TCGA-EE-A29E-06 6 119569512 119569512 C T MAN1A1 Missense_Mutation p.R302Q 0.43 deleterious(0.01) possibly_damaging(0.877) TCGA-EE-A29E-06 6 121600266 121600266 C T TBC1D32 Splice_Site p.X578_splice 0.40 TCGA-EE-A29E-06 6 121768107 121768107 G A GJA1 Silent p.G38G 0.40 TCGA-EE-A29E-06 6 121768740 121768740 G A GJA1 Silent p.A249A 0.31 TCGA-EE-A29E-06 6 123046339 123046339 G A PKIB Silent p.%3D 0.45 TCGA-EE-A29E-06 6 125269104 125269104 G A RP11-510H23.1 RNA 0.29 TCGA-EE-A29E-06 6 125330394 125330394 C T RNF217 5'UTR 0.34 TCGA-EE-A29E-06 6 127768859 127768859 T A KIAA0408 Missense_Mutation p.E202V 0.38 deleterious(0) possibly_damaging(0.632) TCGA-EE-A29E-06 6 128176254 128176254 C T THEMIS Silent p.K57K 0.31 TCGA-EE-A29E-06 6 128563672 128563672 G A PTPRK Missense_Mutation p.P191S 0.22 tolerated(0.11) probably_damaging(0.988) TCGA-EE-A29E-06 6 130761883 130761883 C T TMEM200A Missense_Mutation p.R106W 0.48 deleterious(0) probably_damaging(0.981) TCGA-EE-A29E-06 6 131931276 131931276 G A MED23 Silent p.L329L 0.41 TCGA-EE-A29E-06 6 132031899 132031899 C T CTAGE9 Missense_Mutation p.E87K 0.30 deleterious(0.03) benign(0.029) TCGA-EE-A29E-06 6 132939236 132939236 C T TAAR2 Missense_Mutation p.E37K 0.36 tolerated(0.92) benign(0.001) TCGA-EE-A29E-06 6 133014378 133014378 C T VNN1 Missense_Mutation p.G204E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 133055829 133055829 C T VNN3 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-EE-A29E-06 6 133767784 133767784 G A EYA4 Missense_Mutation p.D34N 0.33 tolerated(0.08) possibly_damaging(0.566) TCGA-EE-A29E-06 6 134210519 134210519 C T TCF21 5'UTR 0.36 TCGA-EE-A29E-06 6 134210670 134210670 G A TCF21 Silent p.E45E 0.31 TCGA-EE-A29E-06 6 135518428 135518428 C T MYB Silent p.S511S 0.50 TCGA-EE-A29E-06 6 136494966 136494966 G A PDE7B Missense_Mutation p.R248Q 0.39 deleterious(0) possibly_damaging(0.848) TCGA-EE-A29E-06 6 136590675 136590675 C T BCLAF1 Missense_Mutation p.E707K 0.15 tolerated(0.15) possibly_damaging(0.486) TCGA-EE-A29E-06 6 136882775 136882775 C T MAP3K5 Missense_Mutation p.E1295K 0.29 tolerated(0.68) benign(0.002) TCGA-EE-A29E-06 6 136901503 136901503 C T MAP3K5 Nonsense_Mutation p.W1151* 0.23 TCGA-EE-A29E-06 6 136913467 136913467 C T MAP3K5 Silent p.E1023E 0.37 TCGA-EE-A29E-06 6 136923095 136923095 G A MAP3K5 Missense_Mutation p.P901L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 137322750 137322750 G A IL20RA Missense_Mutation p.T536I 0.41 tolerated(0.14) benign(0.03) TCGA-EE-A29E-06 6 138413301 138413301 C T PERP Missense_Mutation p.G154S 0.42 deleterious(0.01) possibly_damaging(0.506) TCGA-EE-A29E-06 6 138417525 138417525 G A PERP Silent p.F107F 0.47 TCGA-EE-A29E-06 6 139609879 139609879 G A TXLNB Missense_Mutation p.P53L 0.39 tolerated(0.06) benign(0.01) TCGA-EE-A29E-06 6 13977949 13977949 G A RNF182 Missense_Mutation p.G200E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 144262575 144262575 G A PLAGL1 Missense_Mutation p.H460Y 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29E-06 6 144263446 144263446 C T PLAGL1 Silent p.K169K 0.42 TCGA-EE-A29E-06 6 144774947 144774947 C T UTRN Silent p.I742I 0.40 TCGA-EE-A29E-06 6 146126358 146126358 G A FBXO30 Missense_Mutation p.S395L 0.41 tolerated(0.64) benign(0.007) TCGA-EE-A29E-06 6 150322493 150322493 G A RAET1K RNA 0.43 TCGA-EE-A29E-06 6 150690271 150690271 G A IYD Missense_Mutation p.R35K 0.43 tolerated(0.81) benign(0.002) TCGA-EE-A29E-06 6 152523006 152523006 G A SYNE1 Missense_Mutation p.L7700F 0.29 benign(0.078) TCGA-EE-A29E-06 6 152532666 152532666 C T SYNE1 Missense_Mutation p.G7518R 0.31 probably_damaging(0.999) TCGA-EE-A29E-06 6 152651277 152651277 G A SYNE1 Missense_Mutation p.P4848L 0.36 possibly_damaging(0.649) TCGA-EE-A29E-06 6 152711425 152711425 G A SYNE1 Missense_Mutation p.H2723Y 0.45 benign(0.001) TCGA-EE-A29E-06 6 152718116 152718116 C T SYNE1 Splice_Site p.X2451_splice 0.46 TCGA-EE-A29E-06 6 152771814 152771814 C T SYNE1 Missense_Mutation p.S1114N 0.45 benign(0.002) TCGA-EE-A29E-06 6 153043113 153043113 C T MYCT1 Nonsense_Mutation p.Q145* 0.30 TCGA-EE-A29E-06 6 153043499 153043499 C T MYCT1 3'UTR 0.55 TCGA-EE-A29E-06 6 153073395 153073395 T C VIP Missense_Mutation p.L28P 0.38 tolerated(0.19) probably_damaging(0.982) TCGA-EE-A29E-06 6 154727717 154727717 G A CNKSR3 Missense_Mutation p.P480L 0.39 tolerated_low_confidence(0.31) benign(0.001) TCGA-EE-A29E-06 6 15496531 15496531 G C JARID2 Missense_Mutation p.D359H 0.33 deleterious_low_confidence(0) benign(0.176) TCGA-EE-A29E-06 6 155757582 155757582 G A NOX3 Silent p.P256P 0.37 TCGA-EE-A29E-06 6 158288663 158288663 C T SNX9 Missense_Mutation p.P33S 0.39 tolerated(0.07) benign(0.007) TCGA-EE-A29E-06 6 159687136 159687136 C T FNDC1 Missense_Mutation p.P1769S 0.49 deleterious(0) possibly_damaging(0.851) TCGA-EE-A29E-06 6 160188084 160188084 C T ACAT2 Missense_Mutation p.P80S 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 6 160679502 160679502 C T SLC22A2 Nonsense_Mutation p.W96* 0.42 TCGA-EE-A29E-06 6 161006189 161006189 C T LPA Missense_Mutation p.G1393E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 161071386 161071386 C T LPA Missense_Mutation p.E65K 0.44 tolerated(0.31) possibly_damaging(0.851) TCGA-EE-A29E-06 6 161159567 161159567 C T PLG Intron 0.40 TCGA-EE-A29E-06 6 162622263 162622263 C T PARK2 Missense_Mutation p.S145N 0.38 tolerated(0.19) probably_damaging(0.993) TCGA-EE-A29E-06 6 165715313 165715313 C T C6orf118 Silent p.R166R 0.41 TCGA-EE-A29E-06 6 165715586 165715586 C T C6orf118 Silent p.T75T 0.35 TCGA-EE-A29E-06 6 167705012 167705012 C T UNC93A Missense_Mutation p.S12F 0.39 deleterious(0) probably_damaging(0.984) TCGA-EE-A29E-06 6 168461500 168461500 T A FRMD1 Missense_Mutation p.E428V 0.52 tolerated(0.15) benign(0.004) TCGA-EE-A29E-06 6 169649039 169649039 C T THBS2 Missense_Mutation p.D28N 0.30 tolerated(0.06) benign(0.069) TCGA-EE-A29E-06 6 170173476 170173476 C T ERMARD Missense_Mutation p.P432L 0.38 deleterious(0.01) possibly_damaging(0.683) TCGA-EE-A29E-06 6 17648081 17648081 G A NUP153 Missense_Mutation p.P530L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 6 17855830 17855830 G A KIF13A Missense_Mutation p.S111F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 6 18121870 18121870 G A NHLRC1 Missense_Mutation p.S323F 0.38 deleterious(0) probably_damaging(0.94) TCGA-EE-A29E-06 6 18197448 18197448 C T KDM1B Missense_Mutation p.P245L 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29E-06 6 18207642 18207642 C T KDM1B Missense_Mutation p.S326L 0.29 tolerated(0.67) unknown(0) TCGA-EE-A29E-06 6 24145991 24145991 G A NRSN1 Silent p.L135L 0.54 TCGA-EE-A29E-06 6 24467020 24467020 G A GPLD1 Missense_Mutation p.P237S 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 6 24505099 24505099 G A ALDH5A1 Nonsense_Mutation p.W204* 0.49 TCGA-EE-A29E-06 6 24576801 24576801 C T KIAA0319 Missense_Mutation p.G510E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 24596130 24596130 C T KIAA0319 Missense_Mutation p.E258K 0.41 tolerated(0.48) benign(0.027) TCGA-EE-A29E-06 6 24601376 24601376 G A KIAA0319 5'UTR 0.28 TCGA-EE-A29E-06 6 24865552 24865552 G A FAM65B Missense_Mutation p.R181W 0.46 deleterious(0) probably_damaging(0.973) TCGA-EE-A29E-06 6 25488746 25488746 C T LRRC16A Missense_Mutation p.P333L 0.44 tolerated(0.12) benign(0.007) TCGA-EE-A29E-06 6 25921430 25921430 G A SLC17A2 Missense_Mutation p.R151W 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 26107854 26107854 C T HIST1H1T Silent p.P156P 0.34 TCGA-EE-A29E-06 6 26123722 26123722 G A HIST1H2BC Intron 0.44 TCGA-EE-A29E-06 6 26200153 26200153 A G HIST1H2BF Missense_Mutation p.T123A 0.44 deleterious_low_confidence(0.02) benign(0.013) TCGA-EE-A29E-06 6 27368397 27368397 C T ZNF391 Missense_Mutation p.S83F 0.34 tolerated(0.69) benign(0.022) TCGA-EE-A29E-06 6 27925214 27925214 C T OR2B6 Silent p.L66L 0.40 TCGA-EE-A29E-06 6 29141898 29141898 C T OR2J2 Silent p.S162S 0.40 TCGA-EE-A29E-06 6 29231709 29231709 C T XXbac-BPG308J9.3 RNA 0.42 TCGA-EE-A29E-06 6 29275263 29275263 C T OR14J1 Missense_Mutation p.S266L 0.40 deleterious(0.01) possibly_damaging(0.763) TCGA-EE-A29E-06 6 29408290 29408290 C T OR10C1 Silent p.P166P 0.37 TCGA-EE-A29E-06 6 29408570 29408570 C T OR10C1 Missense_Mutation p.R260C 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29E-06 6 29523698 29523698 C T UBD Missense_Mutation p.G153S 0.37 tolerated(0.11) benign(0.315) TCGA-EE-A29E-06 6 29624930 29624930 G A MOG 5'Flank 0.36 TCGA-EE-A29E-06 6 30140006 30140006 G A TRIM15 Silent p.V426V 0.53 TCGA-EE-A29E-06 6 30314270 30314270 C A RPP21 Missense_Mutation p.F109L 0.43 tolerated(0.12) benign(0.196) TCGA-EE-A29E-06 6 30515194 30515194 G A GNL1 Missense_Mutation p.P405S 0.47 deleterious(0.05) possibly_damaging(0.449) TCGA-EE-A29E-06 6 30857031 30857031 C T DDR1 Missense_Mutation p.P81S 0.41 deleterious(0.01) possibly_damaging(0.898) TCGA-EE-A29E-06 6 30892177 30892177 C T VARS2 Missense_Mutation p.P868L 0.38 tolerated(0.11) benign(0.011) TCGA-EE-A29E-06 6 30892178 30892178 C T VARS2 Silent p.P868P 0.38 TCGA-EE-A29E-06 6 31657875 31657875 G A ABHD16A Missense_Mutation p.P313S 0.40 deleterious(0) possibly_damaging(0.686) TCGA-EE-A29E-06 6 31744340 31744340 G A VWA7 Missense_Mutation p.R73C 0.39 deleterious(0.03) benign(0.023) TCGA-EE-A29E-06 6 31915258 31915258 G A CFB Silent p.Q708Q 0.37 TCGA-EE-A29E-06 6 31996586 31996586 C T C4B Missense_Mutation p.S1116L 0.48 deleterious(0) probably_damaging(0.916) TCGA-EE-A29E-06 6 32011832 32011832 G A TNXB Missense_Mutation p.P209S 0.80 tolerated(0.82) possibly_damaging(0.507) TCGA-EE-A29E-06 6 32012825 32012825 C T TNXB Missense_Mutation p.E58K 0.18 tolerated(0.49) possibly_damaging(0.752) TCGA-EE-A29E-06 6 32020708 32020708 C T TNXB Missense_Mutation p.E2950K 0.34 possibly_damaging(0.801) TCGA-EE-A29E-06 6 32029481 32029481 G A TNXB Silent p.T2395T 0.42 TCGA-EE-A29E-06 6 32039786 32039786 G A TNXB Silent p.V1657V 0.38 TCGA-EE-A29E-06 6 32118242 32118242 G C PRRT1 Missense_Mutation p.T154S 0.53 tolerated_low_confidence(0.71) benign(0.002) TCGA-EE-A29E-06 6 32190478 32190478 G A NOTCH4 Silent p.P87P 0.39 TCGA-EE-A29E-06 6 32191635 32191635 C T NOTCH4 Missense_Mutation p.R24K 0.36 tolerated_low_confidence(0.07) benign(0.013) TCGA-EE-A29E-06 6 32411144 32411144 C T HLA-DRA Missense_Mutation p.R171C 0.33 tolerated(0.14) benign(0.441) TCGA-EE-A29E-06 6 32522616 32522616 T C RNU1-61P 5'Flank 0.30 TCGA-EE-A29E-06 6 32549448 32549448 C T HLA-DRB1 Missense_Mutation p.G180R 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 6 32805562 32805562 G A TAP2 Missense_Mutation p.P150L 0.31 tolerated(0.77) benign(0.145) TCGA-EE-A29E-06 6 32944138 32944138 C T BRD2 Missense_Mutation p.P241L 0.36 deleterious(0.01) benign(0.012) TCGA-EE-A29E-06 6 33134870 33134870 C T COL11A2 Missense_Mutation p.D1317N 0.45 unknown(0) TCGA-EE-A29E-06 6 33157101 33157101 G A COL11A2 Silent p.F76F 0.52 TCGA-EE-A29E-06 6 33236869 33236869 C T VPS52 Missense_Mutation p.R157Q 0.40 tolerated(0.76) benign(0.044) TCGA-EE-A29E-06 6 33368094 33368094 C T KIFC1 Intron 0.43 TCGA-EE-A29E-06 6 33412331 33412331 C T SYNGAP1 Silent p.I1173I 0.25 TCGA-EE-A29E-06 6 33541631 33541631 C T BAK1 Silent p.L195L 0.40 TCGA-EE-A29E-06 6 33652691 33652691 C T ITPR3 Silent p.L1760L 0.50 TCGA-EE-A29E-06 6 34059808 34059808 G A GRM4 Silent p.S196S 0.29 TCGA-EE-A29E-06 6 35467883 35467883 C T TULP1 Missense_Mutation p.S457N 0.29 tolerated(0.73) benign(0.004) TCGA-EE-A29E-06 6 35716457 35716457 C T ARMC12 Missense_Mutation p.S305F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 35923117 35923117 C T SLC26A8 Missense_Mutation p.E682K 0.44 tolerated(1) benign(0.001) TCGA-EE-A29E-06 6 35928780 35928780 G A SLC26A8 Missense_Mutation p.R520C 0.40 deleterious(0) probably_damaging(0.953) TCGA-EE-A29E-06 6 36298334 36298334 C T C6orf222 Missense_Mutation p.R45K 0.41 tolerated(0.35) possibly_damaging(0.567) TCGA-EE-A29E-06 6 36334427 36334427 G A ETV7 Missense_Mutation p.P341S 0.42 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 6 36976648 36976648 A G FGD2 Missense_Mutation p.D36G 0.36 tolerated_low_confidence(0.41) benign(0) TCGA-EE-A29E-06 6 37186744 37186744 G A TMEM217 Silent p.F21F 0.30 TCGA-EE-A29E-06 6 37429775 37429775 C T CMTR1 Silent p.L408L 0.45 TCGA-EE-A29E-06 6 37442305 37442305 C T CMTR1 Silent p.S609S 0.40 TCGA-EE-A29E-06 6 38754603 38754603 C T DNAH8 Missense_Mutation p.P603S 0.43 benign(0.303) TCGA-EE-A29E-06 6 38754604 38754604 C T DNAH8 Missense_Mutation p.P603L 0.43 benign(0.191) TCGA-EE-A29E-06 6 38757653 38757653 G A DNAH8 Missense_Mutation p.M669I 0.41 benign(0) TCGA-EE-A29E-06 6 38840389 38840389 G A DNAH8 Silent p.T2139T 0.41 TCGA-EE-A29E-06 6 38843394 38843394 C T DNAH8 Missense_Mutation p.P2333S 0.25 benign(0.083) TCGA-EE-A29E-06 6 38890883 38890883 C T DNAH8 Missense_Mutation p.S3354F 0.34 probably_damaging(0.924) TCGA-EE-A29E-06 6 38997991 38997991 C T DNAH8 Silent p.L4432L 0.45 TCGA-EE-A29E-06 6 40360132 40360132 C T LRFN2 Nonsense_Mutation p.W640* 0.62 TCGA-EE-A29E-06 6 40400075 40400075 C T LRFN2 Missense_Mutation p.D260N 0.47 deleterious(0.02) possibly_damaging(0.624) TCGA-EE-A29E-06 6 41558079 41558079 C T FOXP4 Silent p.I476I 0.43 TCGA-EE-A29E-06 6 42689943 42689943 C T PRPH2 Missense_Mutation p.E44K 0.46 deleterious(0) possibly_damaging(0.544) TCGA-EE-A29E-06 6 42935153 42935153 G T PEX6 Missense_Mutation p.P613T 0.30 tolerated(0.21) possibly_damaging(0.474) TCGA-EE-A29E-06 6 43098000 43098000 C T PTK7 Missense_Mutation p.P176L 0.34 tolerated(0.07) benign(0.217) TCGA-EE-A29E-06 6 43252050 43252050 G A TTBK1 Missense_Mutation p.R1191K 0.32 probably_damaging(0.952) TCGA-EE-A29E-06 6 43308573 43308573 A T ZNF318 Silent p.S1150S 0.48 TCGA-EE-A29E-06 6 43484482 43484482 A G YIPF3 Missense_Mutation p.F22L 0.38 deleterious_low_confidence(0.01) benign(0.352) TCGA-EE-A29E-06 6 44144011 44144011 G A CAPN11 Missense_Mutation p.E313K 0.44 tolerated(0.41) benign(0.072) TCGA-EE-A29E-06 6 44197648 44197648 C T SLC29A1 Missense_Mutation p.P107S 0.50 tolerated(0.43) benign(0.034) TCGA-EE-A29E-06 6 44249952 44249952 G A TCTE1 Silent p.L397L 0.42 TCGA-EE-A29E-06 6 44250169 44250169 C T TCTE1 Missense_Mutation p.R325Q 0.32 tolerated(0.13) possibly_damaging(0.627) TCGA-EE-A29E-06 6 44255463 44255463 T G TCTE1 Missense_Mutation p.S34R 0.37 tolerated(0.14) benign(0.02) TCGA-EE-A29E-06 6 46107842 46107842 G A ENPP4 Silent p.S174S 0.39 TCGA-EE-A29E-06 6 46190958 46190958 C T RCAN2 Missense_Mutation p.E218K 0.38 tolerated(0.06) benign(0.438) TCGA-EE-A29E-06 6 46806849 46806849 C T MEP1A Silent p.I739I 0.54 TCGA-EE-A29E-06 6 46828586 46828586 G A GPR116 Silent p.L749L 0.36 TCGA-EE-A29E-06 6 46830831 46830831 C T GPR116 Missense_Mutation p.E665K 0.33 tolerated(1) benign(0.002) TCGA-EE-A29E-06 6 46846123 46846123 C T GPR116 Silent p.L352L 0.35 TCGA-EE-A29E-06 6 46977795 46977795 G A GPR110 Missense_Mutation p.P459L 0.32 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A29E-06 6 46977796 46977796 G A GPR110 Missense_Mutation p.P459S 0.31 tolerated(0.08) benign(0.311) TCGA-EE-A29E-06 6 47749833 47749833 G A OPN5 Missense_Mutation p.D11N 0.40 tolerated_low_confidence(0.17) benign(0) TCGA-EE-A29E-06 6 49399349 49399349 T A MUT 3'UTR 0.29 TCGA-EE-A29E-06 6 4943786 4943786 C T CDYL Silent p.F376F 0.47 TCGA-EE-A29E-06 6 49582516 49582516 C T RHAG Missense_Mutation p.E231K 0.42 tolerated(0.92) benign(0.033) TCGA-EE-A29E-06 6 49754773 49754773 G A PGK2 Missense_Mutation p.S43F 0.30 deleterious(0) possibly_damaging(0.555) TCGA-EE-A29E-06 6 51586802 51586802 A G PKHD1 Intron 0.31 TCGA-EE-A29E-06 6 51890163 51890163 T A PKHD1 Missense_Mutation p.E1482V 0.37 deleterious(0) possibly_damaging(0.873) TCGA-EE-A29E-06 6 52054017 52054017 C T IL17A Missense_Mutation p.S132F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 6 52103713 52103713 G T IL17F Silent p.A23A 0.48 TCGA-EE-A29E-06 6 52664052 52664052 G A GSTA1 Missense_Mutation p.P5L 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29E-06 6 52993585 52993585 G A GCM1 Silent p.L244L 0.40 TCGA-EE-A29E-06 6 53764587 53764587 G A LRRC1 Missense_Mutation p.E229K 0.48 tolerated(0.15) probably_damaging(0.991) TCGA-EE-A29E-06 6 54208130 54208130 G A TINAG Nonsense_Mutation p.W244* 0.41 TCGA-EE-A29E-06 6 54735196 54735196 G A FAM83B Missense_Mutation p.R51Q 0.29 deleterious(0.01) benign(0.22) TCGA-EE-A29E-06 6 55039520 55039520 G A HCRTR2 Silent p.R45R 0.37 TCGA-EE-A29E-06 6 55142267 55142267 C T HCRTR2 Silent p.S284S 0.32 TCGA-EE-A29E-06 6 55381321 55381321 C T HMGCLL1 Silent p.Q156Q 0.35 TCGA-EE-A29E-06 6 55924902 55924902 G A COL21A1 Missense_Mutation p.P841L 0.34 tolerated(0.17) benign(0) TCGA-EE-A29E-06 6 55924989 55924989 C T COL21A1 Missense_Mutation p.G812E 0.40 tolerated(1) benign(0.006) TCGA-EE-A29E-06 6 56033060 56033060 G A COL21A1 Silent p.L354L 0.56 TCGA-EE-A29E-06 6 56035923 56035923 G A COL21A1 Missense_Mutation p.S215F 0.42 deleterious(0) probably_damaging(0.984) TCGA-EE-A29E-06 6 56999599 56999599 C T ZNF451 Silent p.S211S 0.44 TCGA-EE-A29E-06 6 63990145 63990145 G A LGSN Silent p.V437V 0.40 TCGA-EE-A29E-06 6 64394364 64394364 T C PHF3 Silent p.D247D 0.35 TCGA-EE-A29E-06 6 64395690 64395690 C T PHF3 Silent p.F689F 0.52 TCGA-EE-A29E-06 6 6589070 6589070 G A LY86 Missense_Mutation p.D35N 0.37 tolerated(0.6) benign(0) TCGA-EE-A29E-06 6 66115113 66115113 G A EYS Missense_Mutation p.S337L 0.47 tolerated(0.27) possibly_damaging(0.765) TCGA-EE-A29E-06 6 6626593 6626593 C T LY86 Silent p.F97F 0.34 TCGA-EE-A29E-06 6 69703786 69703786 G A BAI3 Missense_Mutation p.E621K 0.34 deleterious(0.02) possibly_damaging(0.735) TCGA-EE-A29E-06 6 69728382 69728382 G A BAI3 Missense_Mutation p.G700R 0.49 deleterious(0) probably_damaging(0.967) TCGA-EE-A29E-06 6 70897790 70897790 G A COL19A1 Silent p.G956G 0.44 TCGA-EE-A29E-06 6 70964860 70964860 C T COL9A1 Missense_Mutation p.G535E 0.43 probably_damaging(1) TCGA-EE-A29E-06 6 70979353 70979353 G A COL9A1 Missense_Mutation p.H405Y 0.35 possibly_damaging(0.883) TCGA-EE-A29E-06 6 7231086 7231086 C T RREB1 Silent p.S918S 0.35 TCGA-EE-A29E-06 6 72967888 72967888 A T RIMS1 Missense_Mutation p.Q944L 0.29 tolerated(0.16) probably_damaging(0.983) TCGA-EE-A29E-06 6 73108791 73108791 C T RIMS1 Missense_Mutation p.L1619F 0.32 deleterious(0) probably_damaging(0.986) TCGA-EE-A29E-06 6 73751702 73751702 G A KCNQ5 Missense_Mutation p.R178Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 6 73900323 73900323 G A KCNQ5 Silent p.R554R 0.50 TCGA-EE-A29E-06 6 73904846 73904846 C T KCNQ5 Silent p.I855I 0.35 TCGA-EE-A29E-06 6 73951207 73951207 G A KHDC1 3'UTR 0.34 TCGA-EE-A29E-06 6 74063680 74063680 G A DPPA5 Missense_Mutation p.S63L 0.44 tolerated(0.11) benign(0.023) TCGA-EE-A29E-06 6 74079509 74079509 C T OOEP Missense_Mutation p.D3N 0.25 tolerated(0.05) possibly_damaging(0.811) TCGA-EE-A29E-06 6 74155359 74155359 G A MB21D1 Missense_Mutation p.P257S 0.55 deleterious(0.02) benign(0.305) TCGA-EE-A29E-06 6 74481165 74481165 G A CD109 Nonsense_Mutation p.W563* 0.45 TCGA-EE-A29E-06 6 74481166 74481166 G A CD109 Nonsense_Mutation p.W563* 0.45 TCGA-EE-A29E-06 6 74516594 74516594 C T CD109 Silent p.F996F 0.43 TCGA-EE-A29E-06 6 7578768 7578768 G T DSP Missense_Mutation p.E1019D 0.25 probably_damaging(0.986) TCGA-EE-A29E-06 6 75965936 75965936 G A TMEM30A Missense_Mutation p.P323L 0.45 tolerated(0.06) probably_damaging(0.933) TCGA-EE-A29E-06 6 76023302 76023302 G A FILIP1 Missense_Mutation p.S749F 0.48 deleterious(0) probably_damaging(0.99) TCGA-EE-A29E-06 6 76023924 76023924 C T FILIP1 Missense_Mutation p.D542N 0.51 deleterious(0.05) benign(0.357) TCGA-EE-A29E-06 6 76023970 76023970 C T FILIP1 Silent p.V526V 0.41 TCGA-EE-A29E-06 6 76072564 76072564 C T FILIP1 Missense_Mutation p.G116R 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 6 7883304 7883304 G A TXNDC5 3'UTR 0.50 TCGA-EE-A29E-06 6 80197298 80197298 G A LCA5 Missense_Mutation p.P506L 0.41 tolerated(0.35) benign(0.072) TCGA-EE-A29E-06 6 83866994 83866994 C T DOPEY1 Missense_Mutation p.P2233L 0.29 deleterious(0) probably_damaging(0.96) TCGA-EE-A29E-06 6 83921771 83921771 G A ME1 Missense_Mutation p.P531S 0.53 deleterious(0) probably_damaging(0.956) TCGA-EE-A29E-06 6 84055912 84055912 C T ME1 Missense_Mutation p.D194N 0.36 deleterious(0) probably_damaging(0.993) TCGA-EE-A29E-06 6 84108201 84108201 C T ME1 Missense_Mutation p.E83K 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 6 84350864 84350864 C T SNAP91 Missense_Mutation p.R239Q 0.40 deleterious(0) unknown(0) TCGA-EE-A29E-06 6 84417550 84417550 C T SNAP91 Missense_Mutation p.E33K 0.45 deleterious(0) unknown(0) TCGA-EE-A29E-06 6 84669579 84669579 C T CYB5R4 Silent p.I516I 0.47 TCGA-EE-A29E-06 6 87967604 87967604 T A ZNF292 Silent p.P1419P 0.43 TCGA-EE-A29E-06 6 88170799 88170799 G A C6ORF165 Silent p.Q518Q 0.38 TCGA-EE-A29E-06 6 88853525 88853525 G A CNR1 3'UTR 0.45 TCGA-EE-A29E-06 6 88854040 88854040 G A CNR1 Silent p.I318I 0.40 TCGA-EE-A29E-06 6 88854820 88854820 G A CNR1 Silent p.F58F 0.40 TCGA-EE-A29E-06 6 89926975 89926975 C T GABRR1 Missense_Mutation p.E23K 0.42 tolerated_low_confidence(0.17) benign(0.11) TCGA-EE-A29E-06 6 90604397 90604397 C T GJA10 Silent p.F70F 0.41 TCGA-EE-A29E-06 6 90604403 90604403 C T GJA10 Silent p.I72I 0.40 TCGA-EE-A29E-06 6 90604881 90604881 C T GJA10 Missense_Mutation p.H232Y 0.43 deleterious(0.05) probably_damaging(0.923) TCGA-EE-A29E-06 6 90605568 90605568 C T GJA10 Missense_Mutation p.P461S 0.36 tolerated(0.97) benign(0.007) TCGA-EE-A29E-06 6 93979326 93979326 G A EPHA7 Missense_Mutation p.S501F 0.36 deleterious(0.01) possibly_damaging(0.583) TCGA-EE-A29E-06 6 94120377 94120377 G A EPHA7 Missense_Mutation p.S225F 0.27 deleterious(0) possibly_damaging(0.694) TCGA-EE-A29E-06 6 96652059 96652059 G A FUT9 Missense_Mutation p.R343K 0.43 tolerated(0.31) benign(0.145) TCGA-EE-A29E-06 6 97051638 97051638 C T FHL5 Missense_Mutation p.S50F 0.37 tolerated(0.31) probably_damaging(0.958) TCGA-EE-A29E-06 6 97246357 97246357 C T GPR63 Silent p.T417T 0.40 TCGA-EE-A29E-06 7 100004870 100004870 G A ZCWPW1 Missense_Mutation p.S349F 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 100175318 100175318 G A LRCH4 Missense_Mutation p.P362L 0.30 tolerated(0.06) benign(0.022) TCGA-EE-A29E-06 7 100187602 100187602 G A FBXO24 Silent p.V52V 0.19 TCGA-EE-A29E-06 7 100285477 100285477 G A GIGYF1 Silent p.F65F 0.37 TCGA-EE-A29E-06 7 100350328 100350328 C T ZAN Missense_Mutation p.S867F 0.53 unknown(0) TCGA-EE-A29E-06 7 100371095 100371095 C T ZAN Silent p.D1871D 0.44 TCGA-EE-A29E-06 7 100456509 100456509 C T SLC12A9 Silent p.V270V 0.26 TCGA-EE-A29E-06 7 100677590 100677590 C T MUC17 Missense_Mutation p.P965S 0.23 possibly_damaging(0.451) TCGA-EE-A29E-06 7 100841541 100841541 G A MOGAT3 Missense_Mutation p.S200L 0.92 deleterious(0.01) benign(0.378) TCGA-EE-A29E-06 7 102040047 102040047 C T PRKRIP1 Silent p.R86R 0.87 TCGA-EE-A29E-06 7 102518011 102518011 C T FBXL13 Missense_Mutation p.R513Q 0.29 tolerated(0.29) benign(0.26) TCGA-EE-A29E-06 7 102604101 102604101 G A FBXL13 Silent p.S201S 0.23 TCGA-EE-A29E-06 7 103275976 103275976 G A RELN Silent p.A787A 0.27 TCGA-EE-A29E-06 7 106508675 106508675 C T PIK3CG Silent p.V223V 0.57 TCGA-EE-A29E-06 7 107423303 107423303 C T SLC26A3 Missense_Mutation p.G417D 0.57 deleterious(0) benign(0.217) TCGA-EE-A29E-06 7 107626734 107626734 G A LAMB1 Silent p.F166F 0.29 TCGA-EE-A29E-06 7 107664613 107664613 C T LAMB4 Silent p.R1719R 0.26 TCGA-EE-A29E-06 7 107807368 107807368 G A NRCAM Missense_Mutation p.P1155L 0.56 deleterious(0.01) benign(0.016) TCGA-EE-A29E-06 7 111555930 111555930 C T DOCK4 Missense_Mutation p.G366R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 111927124 111927124 C T ZNF277 Silent p.F96F 0.52 TCGA-EE-A29E-06 7 113518603 113518603 G A PPP1R3A Silent p.S848S 0.54 TCGA-EE-A29E-06 7 113559025 113559025 C T PPP1R3A Silent p.Q9Q 0.56 TCGA-EE-A29E-06 7 115582074 115582074 C T TFEC Missense_Mutation p.G179E 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 7 116557955 116557955 C A CAPZA2 3'UTR 0.09 TCGA-EE-A29E-06 7 117007497 117007497 G A ASZ1 Missense_Mutation p.P395L 0.87 tolerated(0.29) benign(0.269) TCGA-EE-A29E-06 7 117230453 117230453 G A CFTR Missense_Mutation p.G576R 0.49 deleterious(0.01) benign(0.162) TCGA-EE-A29E-06 7 117242901 117242901 C T CFTR Silent p.L881L 0.60 TCGA-EE-A29E-06 7 120686957 120686957 G A CPED1 Nonsense_Mutation p.W150* 0.53 TCGA-EE-A29E-06 7 120686958 120686958 G A CPED1 Missense_Mutation p.D151N 0.53 tolerated(0.07) benign(0.028) TCGA-EE-A29E-06 7 120737878 120737878 G A CPED1 Missense_Mutation p.E248K 0.25 tolerated(0.14) benign(0.003) TCGA-EE-A29E-06 7 120764413 120764413 G A CPED1 Missense_Mutation p.R316K 0.58 tolerated(0.91) benign(0.007) TCGA-EE-A29E-06 7 121943281 121943281 C T FEZF1 Missense_Mutation p.G296S 0.60 tolerated(0.08) probably_damaging(1) TCGA-EE-A29E-06 7 121960193 121960193 C T CADPS2 3'UTR 0.41 TCGA-EE-A29E-06 7 122821071 122821071 G A SLC13A1 Missense_Mutation p.P62S 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 123092841 123092841 C T IQUB Missense_Mutation p.D778N 0.47 deleterious_low_confidence(0.01) benign(0.264) TCGA-EE-A29E-06 7 126173045 126173045 G A GRM8 Silent p.F797F 0.80 TCGA-EE-A29E-06 7 126746568 126746568 G A GRM8 Nonsense_Mutation p.Q237* 0.16 TCGA-EE-A29E-06 7 127240292 127240292 C T FSCN3 Missense_Mutation p.R446C 0.74 tolerated(0.22) possibly_damaging(0.724) TCGA-EE-A29E-06 7 127670519 127670519 C T LRRC4 Missense_Mutation p.V59M 0.57 deleterious(0) probably_damaging(0.988) TCGA-EE-A29E-06 7 127894657 127894657 G A LEP Silent p.K115K 0.88 TCGA-EE-A29E-06 7 127950946 127950946 G A RBM28 Silent p.T728T 0.27 TCGA-EE-A29E-06 7 128480724 128480724 C T FLNC Missense_Mutation p.R558C 0.68 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29E-06 7 128497188 128497188 C T FLNC Silent p.F2526F 0.57 TCGA-EE-A29E-06 7 128801540 128801540 G A TSPAN33 Silent p.V41V 0.14 TCGA-EE-A29E-06 7 129658435 129658435 G A ZC3HC1 3'UTR 0.31 TCGA-EE-A29E-06 7 129909541 129909541 G A CPA2 Silent p.G62G 0.18 TCGA-EE-A29E-06 7 130007273 130007273 A G CPA5 Missense_Mutation p.E300G 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 130353656 130353656 C T TSGA13 3'UTR 0.95 TCGA-EE-A29E-06 7 131833406 131833406 C T PLXNA4 Splice_Site p.X1554_splice 0.65 TCGA-EE-A29E-06 7 131849006 131849006 G A PLXNA4 Silent p.I1465I 0.86 TCGA-EE-A29E-06 7 131853305 131853305 C T PLXNA4 Silent p.V1348V 0.63 TCGA-EE-A29E-06 7 132192477 132192477 G A PLXNA4 Missense_Mutation p.L326F 0.51 tolerated(0.17) probably_damaging(0.986) TCGA-EE-A29E-06 7 133160191 133160191 A T EXOC4 Missense_Mutation p.K431M 0.24 deleterious(0) probably_damaging(0.987) TCGA-EE-A29E-06 7 133689691 133689691 C T EXOC4 Missense_Mutation p.P792L 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 134215495 134215495 G A AKR1B10 Missense_Mutation p.G56E 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 7 134223737 134223737 C T AKR1B10 Silent p.F292F 0.45 TCGA-EE-A29E-06 7 135433431 135433431 C T FAM180A 5'UTR 0.44 TCGA-EE-A29E-06 7 136700038 136700038 G A CHRM2 Missense_Mutation p.M142I 0.62 tolerated(0.92) benign(0.01) TCGA-EE-A29E-06 7 136700737 136700737 G A CHRM2 Silent p.K375K 0.89 TCGA-EE-A29E-06 7 137076046 137076046 C T DGKI Missense_Mutation p.D1040N 0.89 deleterious(0.02) benign(0.047) TCGA-EE-A29E-06 7 137782621 137782621 G A AKR1D1 Missense_Mutation p.E130K 0.57 tolerated(0.07) benign(0.025) TCGA-EE-A29E-06 7 138394418 138394418 G A ATP6V0A4 Silent p.L794L 0.32 TCGA-EE-A29E-06 7 138545893 138545893 G A KIAA1549 Missense_Mutation p.P1747S 0.74 tolerated(0.08) benign(0.156) TCGA-EE-A29E-06 7 139636058 139636058 G T TBXAS1 Missense_Mutation p.E135D 0.59 tolerated(0.1) possibly_damaging(0.88) TCGA-EE-A29E-06 7 139737607 139737607 G A PARP12 Missense_Mutation p.A411V 0.72 tolerated(0.46) probably_damaging(0.992) TCGA-EE-A29E-06 7 140221881 140221881 C G DENND2A Missense_Mutation p.L895F 0.49 deleterious(0) probably_damaging(0.992) TCGA-EE-A29E-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.84 deleterious(0) probably_damaging(0.967) TCGA-EE-A29E-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.84 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29E-06 7 141536104 141536104 C T PRSS37 3'UTR 0.34 TCGA-EE-A29E-06 7 141635690 141635690 G A CLEC5A Missense_Mutation p.S90L 0.35 tolerated(0.36) benign(0.126) TCGA-EE-A29E-06 7 141708401 141708401 C T MGAM Missense_Mutation p.P75S 0.86 tolerated(0.22) benign(0.002) TCGA-EE-A29E-06 7 141731538 141731538 G A MGAM Nonsense_Mutation p.W510* 0.46 TCGA-EE-A29E-06 7 141731539 141731539 G A MGAM Nonsense_Mutation p.W510* 0.46 TCGA-EE-A29E-06 7 141955111 141955111 C T PRSS58 Missense_Mutation p.G67E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 142045523 142045523 C T TRBV4-2 Silent p.V17V 0.27 TCGA-EE-A29E-06 7 142099663 142099663 C T TRBV7-8 Missense_Mutation p.G47S 0.91 tolerated(0.05) possibly_damaging(0.562) TCGA-EE-A29E-06 7 142099750 142099750 G A TRBV7-8 Missense_Mutation p.H18Y 0.51 tolerated(0.97) benign(0.009) TCGA-EE-A29E-06 7 142099924 142099924 G A TRBV7-8 Silent p.L5L 0.57 TCGA-EE-A29E-06 7 142139732 142139732 G A TRBV7-6 Silent p.F13F 0.87 TCGA-EE-A29E-06 7 142168801 142168801 C T TRBV5-4 Missense_Mutation p.G15E 0.68 deleterious(0.02) probably_damaging(0.952) TCGA-EE-A29E-06 7 142364647 142364647 C T TRBV24-1 Silent p.S94S 0.89 TCGA-EE-A29E-06 7 142498751 142498751 G A TRBC2 Missense_Mutation p.E10K 0.60 tolerated(1) benign(0) TCGA-EE-A29E-06 7 142572285 142572285 C T TRPV6 Missense_Mutation p.G471R 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 7 142636725 142636725 C T C7orf34 Missense_Mutation p.P28S 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A29E-06 7 142636726 142636726 C T C7orf34 Missense_Mutation p.P28L 0.24 tolerated_low_confidence(0.09) benign(0.088) TCGA-EE-A29E-06 7 142649701 142649701 G A KEL Silent p.I366I 0.69 TCGA-EE-A29E-06 7 143029883 143029883 C T CLCN1 Missense_Mutation p.P440S 0.30 tolerated(0.41) possibly_damaging(0.733) TCGA-EE-A29E-06 7 143175481 143175481 G A TAS2R41 Nonsense_Mutation p.W172* 0.19 TCGA-EE-A29E-06 7 143417751 143417751 C T FAM115C Silent p.I533I 0.27 TCGA-EE-A29E-06 7 143632523 143632523 C T OR2F2 Silent p.L66L 0.50 TCGA-EE-A29E-06 7 143657094 143657094 G A OR2F1 Missense_Mutation p.E11K 0.27 deleterious(0.02) possibly_damaging(0.484) TCGA-EE-A29E-06 7 143748032 143748032 G A OR2A5 Missense_Mutation p.E180K 0.27 deleterious(0) probably_damaging(0.973) TCGA-EE-A29E-06 7 143748193 143748193 C A OR2A5 Silent p.G233G 0.25 TCGA-EE-A29E-06 7 143806715 143806715 C T OR2A2 Silent p.L14L 0.62 TCGA-EE-A29E-06 7 14613861 14613861 G A DGKB Silent p.I583I 0.35 TCGA-EE-A29E-06 7 14647068 14647068 G A DGKB Missense_Mutation p.P476L 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 7 147844604 147844604 C T CNTNAP2 Missense_Mutation p.S859L 0.25 deleterious(0.01) possibly_damaging(0.762) TCGA-EE-A29E-06 7 148702429 148702429 G A PDIA4 Silent p.A442A 0.27 TCGA-EE-A29E-06 7 148768999 148768999 G A ZNF786 Missense_Mutation p.P289S 0.52 tolerated(0.78) benign(0.006) TCGA-EE-A29E-06 7 149426454 149426454 C T KRBA1 Missense_Mutation p.P601S 0.70 tolerated(0.13) benign(0.189) TCGA-EE-A29E-06 7 149492370 149492370 G A SSPO RNA 0.56 TCGA-EE-A29E-06 7 150163829 150163829 C T GIMAP8 Missense_Mutation p.L15F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 7 150164227 150164227 C T GIMAP8 Silent p.F147F 0.48 TCGA-EE-A29E-06 7 150389501 150389501 C T GIMAP2 Missense_Mutation p.L43F 0.90 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 7 150389737 150389737 G A GIMAP2 Silent p.Q121Q 0.26 TCGA-EE-A29E-06 7 150389963 150389963 G A GIMAP2 Missense_Mutation p.E197K 0.34 tolerated(0.09) possibly_damaging(0.807) TCGA-EE-A29E-06 7 150499345 150499345 G A TMEM176A Missense_Mutation p.G73R 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29E-06 7 150715447 150715447 C T ATG9B Silent p.E602E 0.26 TCGA-EE-A29E-06 7 150733722 150733722 C T ABCB8 Silent p.S401S 0.25 TCGA-EE-A29E-06 7 150911109 150911109 G A ABCF2 Intron 0.27 TCGA-EE-A29E-06 7 1516266 1516266 G A INTS1 Silent p.F1697F 0.21 TCGA-EE-A29E-06 7 151668105 151668105 G A GALNTL5 Missense_Mutation p.R108K 0.22 tolerated(0.51) benign(0.003) TCGA-EE-A29E-06 7 151704932 151704932 G A GALNTL5 Missense_Mutation p.G310E 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 151704934 151704934 A T GALNTL5 Missense_Mutation p.I311F 0.53 deleterious(0) possibly_damaging(0.879) TCGA-EE-A29E-06 7 154379577 154379577 C T DPP6 Intron 0.37 TCGA-EE-A29E-06 7 155301617 155301617 G A CNPY1 Missense_Mutation p.S39F 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29E-06 7 155567706 155567706 C T RBM33 Missense_Mutation p.H1162Y 0.34 deleterious(0) unknown(0) TCGA-EE-A29E-06 7 156746968 156746968 C T NOM1 Silent p.I428I 0.49 TCGA-EE-A29E-06 7 156752583 156752583 C T NOM1 Silent p.F449F 0.62 TCGA-EE-A29E-06 7 17378725 17378725 C T AHR Missense_Mutation p.P426S 0.38 tolerated(0.26) benign(0.039) TCGA-EE-A29E-06 7 17908089 17908089 G A SNX13 Missense_Mutation p.L260F 0.42 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A29E-06 7 18875176 18875176 G A HDAC9 Silent p.G851G 0.40 TCGA-EE-A29E-06 7 19015472 19015472 C T HDAC9 Silent p.G1022G 0.29 TCGA-EE-A29E-06 7 20725318 20725318 G A ABCB5 Splice_Site p.X624_splice 0.37 TCGA-EE-A29E-06 7 20725319 20725319 G A ABCB5 Missense_Mutation p.D624N 0.38 tolerated(0.43) benign(0.062) TCGA-EE-A29E-06 7 23776684 23776684 C T STK31 Missense_Mutation p.A335V 0.29 tolerated(0.19) benign(0.003) TCGA-EE-A29E-06 7 28843904 28843904 C T CREB5 Missense_Mutation p.S264F 0.41 tolerated(0.06) unknown(0) TCGA-EE-A29E-06 7 29440302 29440302 C T CHN2 Missense_Mutation p.S145L 0.38 tolerated(0.13) benign(0.014) TCGA-EE-A29E-06 7 2955004 2955004 G A CARD11 Silent p.F902F 0.39 TCGA-EE-A29E-06 7 2963988 2963988 C T CARD11 Missense_Mutation p.E607K 0.31 tolerated(0.29) benign(0.043) TCGA-EE-A29E-06 7 30661043 30661043 C T GARS Missense_Mutation p.S465F 0.39 deleterious(0) possibly_damaging(0.728) TCGA-EE-A29E-06 7 31120239 31120239 G A ADCYAP1R1 Missense_Mutation p.E93K 0.43 tolerated_low_confidence(0.29) benign(0.057) TCGA-EE-A29E-06 7 31123826 31123826 C T ADCYAP1R1 Silent p.A133A 0.40 TCGA-EE-A29E-06 7 31617667 31617667 G A CCDC129 Silent p.Q289Q 0.31 TCGA-EE-A29E-06 7 31855591 31855591 G A PDE1C Missense_Mutation p.P647L 0.31 tolerated_low_confidence(0.06) benign(0) TCGA-EE-A29E-06 7 32109931 32109931 C T PDE1C Intron 0.39 TCGA-EE-A29E-06 7 33296886 33296886 C T BBS9 Silent p.L161L 0.46 TCGA-EE-A29E-06 7 34118759 34118759 G A BMPER Missense_Mutation p.D457N 0.31 tolerated(0.19) possibly_damaging(0.535) TCGA-EE-A29E-06 7 35242131 35242131 G A TBX20 Missense_Mutation p.P419S 0.67 deleterious_low_confidence(0.04) possibly_damaging(0.452) TCGA-EE-A29E-06 7 35280553 35280553 A G TBX20 Missense_Mutation p.F251L 0.34 deleterious(0.04) benign(0.434) TCGA-EE-A29E-06 7 35674035 35674035 G A HERPUD2 Nonsense_Mutation p.Q316* 0.45 TCGA-EE-A29E-06 7 36616230 36616230 C T AOAH Nonsense_Mutation p.W324* 0.28 TCGA-EE-A29E-06 7 36677516 36677516 C T AOAH Missense_Mutation p.E131K 0.26 tolerated(0.6) benign(0.199) TCGA-EE-A29E-06 7 37901710 37901710 G A NME8 Silent p.E117E 0.42 TCGA-EE-A29E-06 7 37907457 37907457 G A NME8 Missense_Mutation p.E259K 0.46 tolerated(0.46) benign(0.001) TCGA-EE-A29E-06 7 37924006 37924006 G A NME8 Missense_Mutation p.E366K 0.39 tolerated(0.15) possibly_damaging(0.458) TCGA-EE-A29E-06 7 37951821 37951821 G A SFRP4 Missense_Mutation p.P231S 0.34 deleterious(0.04) possibly_damaging(0.651) TCGA-EE-A29E-06 7 38279608 38279608 C T TRGC2 3'UTR 0.18 TCGA-EE-A29E-06 7 38288996 38288996 C T TRGC2 Missense_Mutation p.G60E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 38534094 38534094 G A AMPH Missense_Mutation p.S80L 0.49 deleterious(0) probably_damaging(0.945) TCGA-EE-A29E-06 7 38857459 38857459 G A VPS41 Silent p.F136F 0.33 TCGA-EE-A29E-06 7 39247114 39247114 G A POU6F2 Missense_Mutation p.G136R 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 7 39472834 39472834 G A POU6F2 Silent p.V395V 0.41 TCGA-EE-A29E-06 7 39503854 39503854 G A POU6F2 Missense_Mutation p.A549T 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29E-06 7 42064977 42064977 C T GLI3 Splice_Site p.X415_splice 0.54 TCGA-EE-A29E-06 7 42116431 42116431 G A GLI3 Silent p.F131F 0.47 TCGA-EE-A29E-06 7 42971806 42971806 G A MRPL32 5'UTR 0.37 TCGA-EE-A29E-06 7 43484484 43484484 C T HECW1 Silent p.P571P 0.57 TCGA-EE-A29E-06 7 43495908 43495908 G A HECW1 Missense_Mutation p.R838Q 0.43 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 7 43508659 43508659 G A HECW1 Silent p.L1018L 0.36 TCGA-EE-A29E-06 7 43663439 43663439 C T STK17A Missense_Mutation p.S291F 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29E-06 7 44286760 44286760 G A CAMK2B Missense_Mutation p.L125F 0.38 tolerated_low_confidence(0.71) probably_damaging(0.987) TCGA-EE-A29E-06 7 44561747 44561747 G A NPC1L1 Missense_Mutation p.S911F 0.33 deleterious(0) possibly_damaging(0.775) TCGA-EE-A29E-06 7 44575517 44575517 G A NPC1L1 Silent p.I635I 0.33 TCGA-EE-A29E-06 7 44715811 44715811 C T OGDH Intron 0.42 TCGA-EE-A29E-06 7 45699727 45699727 T A ADCY1 Missense_Mutation p.F465Y 0.41 tolerated(0.84) benign(0.124) TCGA-EE-A29E-06 7 45743343 45743343 G A ADCY1 Missense_Mutation p.E906K 0.44 deleterious(0) possibly_damaging(0.884) TCGA-EE-A29E-06 7 45750248 45750248 C T ADCY1 Silent p.I1018I 0.45 TCGA-EE-A29E-06 7 45753424 45753424 C T ADCY1 Nonsense_Mutation p.Q1064* 0.39 TCGA-EE-A29E-06 7 45753491 45753491 G A ADCY1 Missense_Mutation p.R1086H 0.43 tolerated_low_confidence(0.61) benign(0.136) TCGA-EE-A29E-06 7 47384609 47384609 G A TNS3 Missense_Mutation p.L827F 0.50 tolerated(0.58) benign(0.045) TCGA-EE-A29E-06 7 4780636 4780636 C T FOXK1 Missense_Mutation p.S243F 0.35 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A29E-06 7 4845237 4845237 C T RADIL Nonsense_Mutation p.W750* 0.41 TCGA-EE-A29E-06 7 50468158 50468158 G A IKZF1 Missense_Mutation p.E423K 0.41 deleterious(0) possibly_damaging(0.755) TCGA-EE-A29E-06 7 50514445 50514445 G A FIGNL1 Missense_Mutation p.R181C 0.38 tolerated(0.06) benign(0.01) TCGA-EE-A29E-06 7 53103599 53103599 G A POM121L12 Missense_Mutation p.E79K 0.46 tolerated(0.81) benign(0.018) TCGA-EE-A29E-06 7 5340250 5340250 C T SLC29A4 Silent p.I469I 0.37 TCGA-EE-A29E-06 7 550580 550580 G A PDGFA Missense_Mutation p.R107W 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 55259447 55259447 C T EGFR Silent p.H835H 0.20 TCGA-EE-A29E-06 7 55259465 55259465 G A EGFR Silent p.R841R 0.22 TCGA-EE-A29E-06 7 56141885 56141885 C T SUMF2 Missense_Mutation p.P139S 0.35 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A29E-06 7 6370637 6370637 G A FAM220A Missense_Mutation p.P50L 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29E-06 7 63726689 63726689 C T ZNF679 Silent p.T226T 0.56 TCGA-EE-A29E-06 7 63982354 63982354 G A ZNF680 Missense_Mutation p.H260Y 0.54 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A29E-06 7 65160071 65160071 G A INTS4L2 RNA 0.79 TCGA-EE-A29E-06 7 66489985 66489985 T A TYW1 Silent p.I320I 0.35 TCGA-EE-A29E-06 7 6820488 6820488 G A RSPH10B2 Silent p.E526E 0.19 TCGA-EE-A29E-06 7 71036380 71036380 G A WBSCR17 Missense_Mutation p.G358E 0.44 deleterious(0) probably_damaging(0.916) TCGA-EE-A29E-06 7 71175772 71175772 C T WBSCR17 Silent p.F509F 0.38 TCGA-EE-A29E-06 7 73768221 73768221 G A CLIP2 Silent p.T230T 0.40 TCGA-EE-A29E-06 7 73973312 73973312 C T GTF2IRD1 Silent p.F775F 0.46 TCGA-EE-A29E-06 7 74211277 74211277 G A GTF2IRD2 Silent p.I858I 0.58 TCGA-EE-A29E-06 7 75189160 75189160 G A HIP1 Silent p.A417A 0.89 TCGA-EE-A29E-06 7 75189161 75189161 G A HIP1 Missense_Mutation p.A417V 0.89 deleterious(0.03) benign(0.012) TCGA-EE-A29E-06 7 75511310 75511310 C T RHBDD2 Silent p.F114F 0.61 TCGA-EE-A29E-06 7 75651290 75651290 G A STYXL1 Silent p.L62L 0.94 TCGA-EE-A29E-06 7 7676670 7676670 G A RPA3 Silent p.F109F 0.46 TCGA-EE-A29E-06 7 76942809 76942809 G A GSAP Missense_Mutation p.P756L 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 7 77789561 77789561 G A MAGI2 Missense_Mutation p.P876S 0.63 deleterious(0.04) possibly_damaging(0.851) TCGA-EE-A29E-06 7 80117914 80117914 G A GNAT3 Silent p.S80S 0.14 TCGA-EE-A29E-06 7 81579768 81579768 G A CACNA2D1 Silent p.I1072I 0.56 TCGA-EE-A29E-06 7 81593651 81593651 C T CACNA2D1 Missense_Mutation p.D867N 0.14 deleterious(0) probably_damaging(0.957) TCGA-EE-A29E-06 7 82544227 82544227 C T PCLO Missense_Mutation p.E4359K 0.27 unknown(0) TCGA-EE-A29E-06 7 82580373 82580373 C T PCLO Silent p.T3177T 0.66 TCGA-EE-A29E-06 7 82582174 82582174 G A PCLO Missense_Mutation p.P2699S 0.30 unknown(0) TCGA-EE-A29E-06 7 82764151 82764151 G A PCLO Silent p.F905F 0.31 TCGA-EE-A29E-06 7 82764365 82764365 G A PCLO Missense_Mutation p.P834L 0.28 unknown(0) TCGA-EE-A29E-06 7 82785168 82785168 C T PCLO Silent p.Q263Q 0.20 TCGA-EE-A29E-06 7 86394438 86394438 C T GRM3 5'UTR 0.57 TCGA-EE-A29E-06 7 86541412 86541412 G A KIAA1324L Silent p.F715F 0.58 TCGA-EE-A29E-06 7 87053297 87053297 G A ABCB4 Silent p.V712V 0.29 TCGA-EE-A29E-06 7 87101970 87101970 C T ABCB4 Silent p.T34T 0.24 TCGA-EE-A29E-06 7 87183213 87183213 C T ABCB1 Missense_Mutation p.G288E 0.21 deleterious(0) probably_damaging(0.966) TCGA-EE-A29E-06 7 87912293 87912293 A T STEAP4 Missense_Mutation p.F216Y 0.32 tolerated(0.33) benign(0.397) TCGA-EE-A29E-06 7 88423752 88423752 C T C7orf62 Missense_Mutation p.E169K 0.61 deleterious(0.04) probably_damaging(0.974) TCGA-EE-A29E-06 7 88424228 88424228 C T C7orf62 Missense_Mutation p.G10D 0.53 tolerated_low_confidence(0.24) benign(0.037) TCGA-EE-A29E-06 7 89891307 89891307 C T C7orf63 Missense_Mutation p.S98L 0.46 deleterious(0) benign(0.046) TCGA-EE-A29E-06 7 91731944 91731944 C T AKAP9 Nonsense_Mutation p.R3712* 0.21 TCGA-EE-A29E-06 7 92027937 92027937 C T ANKIB1 Missense_Mutation p.P982S 0.57 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29E-06 7 92731473 92731473 G A SAMD9 Missense_Mutation p.S1313L 0.62 tolerated(0.28) benign(0) TCGA-EE-A29E-06 7 92734745 92734745 A C SAMD9 Missense_Mutation p.F222L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 7 92734772 92734772 C T SAMD9 Missense_Mutation p.M213I 0.29 deleterious(0.03) benign(0.015) TCGA-EE-A29E-06 7 92761354 92761354 C T SAMD9L Missense_Mutation p.D1311N 0.94 tolerated(0.28) benign(0.008) TCGA-EE-A29E-06 7 92761924 92761924 C T SAMD9L Missense_Mutation p.D1121N 0.28 deleterious(0) possibly_damaging(0.88) TCGA-EE-A29E-06 7 92763485 92763485 C T SAMD9L Missense_Mutation p.M600I 0.82 tolerated(0.22) benign(0) TCGA-EE-A29E-06 7 92763940 92763940 C T SAMD9L Missense_Mutation p.E449K 0.51 deleterious(0) possibly_damaging(0.499) TCGA-EE-A29E-06 7 92764408 92764408 G A SAMD9L Missense_Mutation p.L293F 0.28 deleterious(0.03) possibly_damaging(0.723) TCGA-EE-A29E-06 7 94035010 94035010 C T COL1A2 Missense_Mutation p.P171L 0.53 unknown(0) TCGA-EE-A29E-06 7 94052287 94052287 G A COL1A2 Missense_Mutation p.G808S 0.23 unknown(0) TCGA-EE-A29E-06 7 94259055 94259055 C T SGCE Missense_Mutation p.E70K 0.52 tolerated(0.32) benign(0.106) TCGA-EE-A29E-06 7 94918017 94918017 G A PPP1R9A Missense_Mutation p.G1300E 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 7 94946066 94946066 C T PON1 Missense_Mutation p.G61R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 7 95222231 95222231 G A PDK4 Nonsense_Mutation p.R124* 0.56 TCGA-EE-A29E-06 7 95709754 95709754 C T DYNC1I1 Missense_Mutation p.A594V 0.34 tolerated(0.17) probably_damaging(0.995) TCGA-EE-A29E-06 7 97822385 97822385 C T LMTK2 Missense_Mutation p.L870F 0.79 tolerated(0.05) possibly_damaging(0.727) TCGA-EE-A29E-06 7 97860614 97860614 G A TECPR1 Silent p.A682A 0.29 TCGA-EE-A29E-06 7 97949554 97949554 C T BAIAP2L1 Missense_Mutation p.E91K 0.57 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 7 98457810 98457810 G A TMEM130 Silent p.F181F 0.50 TCGA-EE-A29E-06 7 99123907 99123907 C T ZKSCAN5 Missense_Mutation p.S415F 0.26 deleterious(0) probably_damaging(0.962) TCGA-EE-A29E-06 7 99227197 99227197 C T ZSCAN25 Missense_Mutation p.H397Y 0.62 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 7 99273832 99273832 C T CYP3A5 Splice_Site p.X24_splice 0.58 TCGA-EE-A29E-06 7 99273833 99273833 T C CYP3A5 Splice_Site p.X24_splice 0.58 TCGA-EE-A29E-06 7 99305578 99305578 C T CYP3A7 Missense_Mutation p.D425N 0.81 deleterious(0.04) benign(0.112) TCGA-EE-A29E-06 7 99317939 99317939 C T CYP3A7 Silent p.R105R 0.83 TCGA-EE-A29E-06 7 99355750 99355750 G A CYP3A4 3'UTR 0.89 TCGA-EE-A29E-06 7 99457577 99457577 A T CYP3A43 Missense_Mutation p.K330N 0.21 deleterious(0) possibly_damaging(0.823) TCGA-EE-A29E-06 7 99918530 99918530 G A SPDYE3 3'UTR 0.58 TCGA-EE-A29E-06 8 100568854 100568854 C T VPS13B Missense_Mutation p.P1666L 0.23 deleterious(0) probably_damaging(0.981) TCGA-EE-A29E-06 8 103244404 103244404 T C RRM2B Silent p.A59A 0.60 TCGA-EE-A29E-06 8 10389019 10389019 G A PRSS55 Missense_Mutation p.E188K 0.64 tolerated(0.62) benign(0.047) TCGA-EE-A29E-06 8 10467557 10467557 C T RP1L1 Missense_Mutation p.E1351K 0.92 unknown(0) TCGA-EE-A29E-06 8 104922629 104922629 G A RIMS2 Intron 0.58 TCGA-EE-A29E-06 8 105105856 105105856 G A RIMS2 Intron 0.19 TCGA-EE-A29E-06 8 105257166 105257166 G A RIMS2 Silent p.R1119R 0.57 TCGA-EE-A29E-06 8 105263337 105263337 C T RIMS2 Silent p.P1259P 0.51 TCGA-EE-A29E-06 8 105405031 105405031 C T DPYS Missense_Mutation p.R475Q 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A29E-06 8 105436599 105436599 C T DPYS Missense_Mutation p.E371K 0.50 tolerated(0.07) probably_damaging(0.946) TCGA-EE-A29E-06 8 105440310 105440310 G A DPYS Silent p.F330F 0.64 TCGA-EE-A29E-06 8 105459626 105459626 C T DPYS Missense_Mutation p.E177K 0.57 tolerated(0.12) benign(0.003) TCGA-EE-A29E-06 8 106456604 106456604 G A ZFPM2 Missense_Mutation p.G99E 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 8 106814467 106814467 G A ZFPM2 Silent p.K719K 0.63 TCGA-EE-A29E-06 8 10755694 10755694 A G XKR6 Missense_Mutation p.V565A 0.84 deleterious(0) possibly_damaging(0.888) TCGA-EE-A29E-06 8 108264003 108264003 G A ANGPT1 3'UTR 0.54 TCGA-EE-A29E-06 8 108264064 108264064 C T ANGPT1 3'UTR 0.24 TCGA-EE-A29E-06 8 110420401 110420401 C T PKHD1L1 Missense_Mutation p.S646F 0.34 deleterious(0) probably_damaging(0.979) TCGA-EE-A29E-06 8 110463372 110463372 G A PKHD1L1 Missense_Mutation p.G2115E 0.64 deleterious(0.01) possibly_damaging(0.524) TCGA-EE-A29E-06 8 110464387 110464387 G A PKHD1L1 Missense_Mutation p.E2129K 0.59 tolerated(0.37) benign(0.002) TCGA-EE-A29E-06 8 110474030 110474030 G A PKHD1L1 Missense_Mutation p.G2426R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 8 110477133 110477133 C T PKHD1L1 Missense_Mutation p.P2691L 0.58 tolerated(0.32) benign(0.021) TCGA-EE-A29E-06 8 110489605 110489605 G A PKHD1L1 Silent p.K3023K 0.23 TCGA-EE-A29E-06 8 110489617 110489617 C T PKHD1L1 Silent p.A3027A 0.24 TCGA-EE-A29E-06 8 110523033 110523033 G A PKHD1L1 Missense_Mutation p.G3808E 0.61 deleterious(0) probably_damaging(0.958) TCGA-EE-A29E-06 8 11058138 11058138 G A XKR6 Silent p.S237S 0.75 TCGA-EE-A29E-06 8 113293423 113293423 C T CSMD3 Missense_Mutation p.G3163E 0.21 deleterious(0) benign(0.014) TCGA-EE-A29E-06 8 113332163 113332163 C T CSMD3 Missense_Mutation p.E2405K 0.36 deleterious(0.03) possibly_damaging(0.677) TCGA-EE-A29E-06 8 113418864 113418864 C T CSMD3 Missense_Mutation p.V1900I 0.28 tolerated(0.18) probably_damaging(0.997) TCGA-EE-A29E-06 8 113662510 113662510 C T CSMD3 Missense_Mutation p.D1025N 0.57 tolerated(0.3) probably_damaging(0.974) TCGA-EE-A29E-06 8 114448954 114448954 A T CSMD3 Missense_Mutation p.F44I 0.26 tolerated_low_confidence(0.43) benign(0.003) TCGA-EE-A29E-06 8 116933 116933 G A OR4F21 Missense_Mutation p.S31F 0.85 tolerated_low_confidence(0.33) possibly_damaging(0.613) TCGA-EE-A29E-06 8 118183363 118183363 C T SLC30A8 Missense_Mutation p.S307F 0.55 deleterious(0) probably_damaging(0.946) TCGA-EE-A29E-06 8 121174684 121174684 G A COL14A1 Silent p.L75L 0.51 TCGA-EE-A29E-06 8 121228714 121228714 G A COL14A1 Silent p.G574G 0.64 TCGA-EE-A29E-06 8 121256239 121256239 G A COL14A1 Missense_Mutation p.G824E 0.25 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 8 121262996 121262996 G A COL14A1 Missense_Mutation p.V915M 0.62 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A29E-06 8 121267517 121267517 G A COL14A1 Missense_Mutation p.E931K 0.62 tolerated(0.83) benign(0.142) TCGA-EE-A29E-06 8 121267583 121267583 G A COL14A1 Missense_Mutation p.E953K 0.34 tolerated(0.28) probably_damaging(0.999) TCGA-EE-A29E-06 8 121293205 121293205 C T COL14A1 Missense_Mutation p.S1244L 0.47 deleterious(0) benign(0.354) TCGA-EE-A29E-06 8 121457755 121457755 C T MTBP Silent p.F15F 0.66 TCGA-EE-A29E-06 8 124096453 124096453 C T TBC1D31 Missense_Mutation p.S131L 0.54 deleterious(0.02) possibly_damaging(0.783) TCGA-EE-A29E-06 8 124140536 124140536 C T TBC1D31 Missense_Mutation p.R634W 0.22 deleterious(0) possibly_damaging(0.871) TCGA-EE-A29E-06 8 124195090 124195090 G A FAM83A 5'UTR 0.42 TCGA-EE-A29E-06 8 124195494 124195494 C T FAM83A Missense_Mutation p.S133F 0.64 deleterious(0) probably_damaging(0.977) TCGA-EE-A29E-06 8 124710666 124710666 G A ANXA13 Missense_Mutation p.S148F 0.27 deleterious(0.03) possibly_damaging(0.521) TCGA-EE-A29E-06 8 125035699 125035699 C T FER1L6 Missense_Mutation p.P717S 0.32 deleterious(0.02) probably_damaging(1) TCGA-EE-A29E-06 8 125551345 125551345 C T TATDN1 5'Flank 0.30 TCGA-EE-A29E-06 8 130789712 130789712 T C GSDMC Missense_Mutation p.K41R 0.22 tolerated(0.32) benign(0.367) TCGA-EE-A29E-06 8 131861884 131861884 G A ADCY8 Silent p.S792S 0.49 TCGA-EE-A29E-06 8 131916126 131916126 G A ADCY8 Silent p.I601I 0.63 TCGA-EE-A29E-06 8 133036768 133036768 G A OC90 Missense_Mutation p.S465L 0.35 tolerated(0.14) benign(0.033) TCGA-EE-A29E-06 8 133036790 133036790 C T OC90 Missense_Mutation p.A458T 0.67 tolerated(1) benign(0.007) TCGA-EE-A29E-06 8 133187814 133187814 G A KCNQ3 Silent p.I273I 0.38 TCGA-EE-A29E-06 8 133196562 133196562 G A KCNQ3 Missense_Mutation p.A177V 0.19 deleterious(0) probably_damaging(0.949) TCGA-EE-A29E-06 8 133627318 133627318 C T LRRC6 Missense_Mutation p.E314K 0.55 deleterious(0) possibly_damaging(0.556) TCGA-EE-A29E-06 8 133806708 133806708 C T PHF20L1 Missense_Mutation p.H46Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 8 134239812 134239812 C T WISP1 Silent p.S321S 0.62 TCGA-EE-A29E-06 8 135612690 135612690 G A ZFAT Missense_Mutation p.H822Y 0.30 deleterious(0) probably_damaging(0.958) TCGA-EE-A29E-06 8 139160833 139160833 G A FAM135B Silent p.F1126F 0.29 TCGA-EE-A29E-06 8 139160922 139160922 G A FAM135B Nonsense_Mutation p.Q1097* 0.54 TCGA-EE-A29E-06 8 139164457 139164457 G A FAM135B Missense_Mutation p.P754L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 139165314 139165314 G A FAM135B Silent p.S468S 0.46 TCGA-EE-A29E-06 8 139628251 139628251 C T COL22A1 Missense_Mutation p.G1306E 0.35 unknown(0) TCGA-EE-A29E-06 8 139688824 139688824 C T COL22A1 Missense_Mutation p.G1043S 0.50 unknown(0) TCGA-EE-A29E-06 8 139838970 139838970 C T COL22A1 Silent p.R300R 0.20 TCGA-EE-A29E-06 8 140630500 140630500 C T KCNK9 3'UTR 0.51 TCGA-EE-A29E-06 8 140630513 140630513 C T KCNK9 Silent p.R371R 0.52 TCGA-EE-A29E-06 8 140631107 140631107 G A KCNK9 Silent p.I173I 0.29 TCGA-EE-A29E-06 8 140922487 140922487 C T TRAPPC9 Silent p.E1054E 0.29 TCGA-EE-A29E-06 8 141675085 141675085 C A PTK2 Missense_Mutation p.L972F 0.51 deleterious(0.04) possibly_damaging(0.897) TCGA-EE-A29E-06 8 142504968 142504968 C T MROH5 3'Flank 0.58 TCGA-EE-A29E-06 8 143959190 143959190 G A CYP11B1 Intron 0.34 TCGA-EE-A29E-06 8 143993405 143993405 C T CYP11B2 Silent p.A501A 0.28 TCGA-EE-A29E-06 8 14412322 14412322 G A SGCZ Silent p.F51F 0.83 TCGA-EE-A29E-06 8 144295164 144295164 C T GPIHBP1 Silent p.L8L 0.71 TCGA-EE-A29E-06 8 144297295 144297295 G A GPIHBP1 Missense_Mutation p.G153R 0.30 tolerated(0.29) probably_damaging(0.979) TCGA-EE-A29E-06 8 144407676 144407676 G A TOP1MT Nonsense_Mutation p.Q171* 0.25 TCGA-EE-A29E-06 8 144732244 144732244 C T ZNF623 Silent p.L68L 0.52 TCGA-EE-A29E-06 8 144808844 144808844 G A FAM83H Silent p.P929P 0.46 TCGA-EE-A29E-06 8 144941802 144941802 G A EPPK1 Missense_Mutation p.R1874C 0.59 benign(0.001) TCGA-EE-A29E-06 8 144943558 144943558 G A EPPK1 Silent p.F1288F 0.50 TCGA-EE-A29E-06 8 144944646 144944646 G A EPPK1 Silent p.L926L 0.42 TCGA-EE-A29E-06 8 144947061 144947061 C T EPPK1 Missense_Mutation p.G121S 0.47 probably_damaging(0.999) TCGA-EE-A29E-06 8 145059154 145059154 G A PARP10 Missense_Mutation p.P339L 0.37 tolerated(0.54) benign(0.018) TCGA-EE-A29E-06 8 145065437 145065437 C T GRINA Missense_Mutation p.P16S 0.44 tolerated_low_confidence(0.85) unknown(0) TCGA-EE-A29E-06 8 145113430 145113430 C T OPLAH Missense_Mutation p.G251D 0.24 deleterious(0.03) benign(0.024) TCGA-EE-A29E-06 8 145113431 145113431 C T OPLAH Missense_Mutation p.G251S 0.24 tolerated(0.62) benign(0.006) TCGA-EE-A29E-06 8 145151587 145151587 C T CYC1 Missense_Mutation p.P238S 0.50 deleterious(0.05) benign(0.081) TCGA-EE-A29E-06 8 145540555 145540555 T A DGAT1 Silent p.R424R 0.34 TCGA-EE-A29E-06 8 145583581 145583581 C T SLC52A2 Silent p.F143F 0.50 TCGA-EE-A29E-06 8 145667672 145667672 G A TONSL Silent p.T234T 0.36 TCGA-EE-A29E-06 8 145741607 145741607 G A RECQL4 Missense_Mutation p.P299L 0.52 tolerated(0.61) benign(0.013) TCGA-EE-A29E-06 8 146068344 146068344 G A ZNF7 Missense_Mutation p.G618R 0.33 tolerated(0.39) benign(0.372) TCGA-EE-A29E-06 8 15508318 15508318 C T TUSC3 Nonsense_Mutation p.Q141* 0.79 TCGA-EE-A29E-06 8 17230708 17230708 T A MTMR7 Missense_Mutation p.K22N 0.74 tolerated(0.27) benign(0.327) TCGA-EE-A29E-06 8 17503462 17503462 G A MTUS1 Silent p.F1262F 0.90 TCGA-EE-A29E-06 8 17743010 17743010 C T FGL1 Silent p.R18R 0.67 TCGA-EE-A29E-06 8 20004780 20004780 C T SLC18A1 Missense_Mutation p.E485K 0.72 deleterious(0.02) benign(0.11) TCGA-EE-A29E-06 8 22005901 22005901 G A LGI3 Silent p.F473F 1.00 TCGA-EE-A29E-06 8 22147357 22147357 C T PIWIL2 Intron 0.68 TCGA-EE-A29E-06 8 22442629 22442629 C T PDLIM2 Missense_Mutation p.P389S 0.79 tolerated(0.12) benign(0.161) TCGA-EE-A29E-06 8 23059372 23059372 C T TNFRSF10A Missense_Mutation p.G193E 0.77 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 23429014 23429014 C T SLC25A37 Silent p.F221F 0.86 TCGA-EE-A29E-06 8 24170995 24170995 C T ADAM28 Missense_Mutation p.P160S 0.81 tolerated(0.4) benign(0.038) TCGA-EE-A29E-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 24262880 24262880 G A ADAMDEC1 3'UTR 0.88 TCGA-EE-A29E-06 8 24776021 24776021 G A NEFM Missense_Mutation p.E885K 0.81 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-EE-A29E-06 8 26627548 26627548 C T ADRA1A Intron 0.95 TCGA-EE-A29E-06 8 27255083 27255083 T C PTK2B 5'UTR 0.80 TCGA-EE-A29E-06 8 27764708 27764708 C T SCARA5 Silent p.G351G 0.78 TCGA-EE-A29E-06 8 28017869 28017869 T A ELP3 Missense_Mutation p.F461I 0.79 tolerated(0.08) benign(0.188) TCGA-EE-A29E-06 8 2813223 2813223 G A CSMD1 Silent p.F3294F 0.76 TCGA-EE-A29E-06 8 2949063 2949063 C T CSMD1 Silent p.K2420K 0.73 TCGA-EE-A29E-06 8 3200966 3200966 C T CSMD1 Missense_Mutation p.D1161N 0.86 probably_damaging(0.999) TCGA-EE-A29E-06 8 3265514 3265514 G A CSMD1 Missense_Mutation p.P660S 0.82 probably_damaging(0.999) TCGA-EE-A29E-06 8 36776396 36776396 C T KCNU1 Silent p.V859V 0.85 TCGA-EE-A29E-06 8 37732590 37732590 G A RAB11FIP1 Silent p.F355F 0.85 TCGA-EE-A29E-06 8 39468050 39468050 G A ADAM18 Missense_Mutation p.G116E 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 39502881 39502881 G A ADAM18 Missense_Mutation p.G312R 0.80 deleterious(0) probably_damaging(0.995) TCGA-EE-A29E-06 8 39682404 39682404 G A ADAM2 Silent p.P67P 0.76 TCGA-EE-A29E-06 8 39780107 39780107 C T IDO1 Silent p.D158D 0.79 TCGA-EE-A29E-06 8 41552234 41552234 C T ANK1 Missense_Mutation p.R1109Q 0.70 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 8 41790311 41790311 G A KAT6A Silent p.T1809T 0.78 TCGA-EE-A29E-06 8 42586887 42586887 C T CHRNB3 Missense_Mutation p.P146L 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 42725192 42725192 G A RNF170 Nonsense_Mutation p.Q93* 0.78 TCGA-EE-A29E-06 8 48626126 48626126 C T SPIDR Missense_Mutation p.S755F 0.33 tolerated(0.26) benign(0.007) TCGA-EE-A29E-06 8 49987928 49987928 C T C8orf22 3'UTR 0.29 TCGA-EE-A29E-06 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.80 TCGA-EE-A29E-06 8 52387679 52387679 C T PXDNL Missense_Mutation p.V183I 0.67 tolerated(0.24) benign(0.002) TCGA-EE-A29E-06 8 52387680 52387680 C T PXDNL Silent p.L182L 0.64 TCGA-EE-A29E-06 8 53045668 53045668 C T ST18 Missense_Mutation p.G798D 0.52 deleterious(0.02) possibly_damaging(0.78) TCGA-EE-A29E-06 8 53573503 53573503 G A RB1CC1 Missense_Mutation p.S537F 0.49 deleterious(0.03) benign(0.005) TCGA-EE-A29E-06 8 54142099 54142099 T A OPRK1 Missense_Mutation p.S301C 0.25 tolerated(0.08) possibly_damaging(0.7) TCGA-EE-A29E-06 8 54147659 54147659 C T OPRK1 Missense_Mutation p.M90I 0.43 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A29E-06 8 55537550 55537550 C T RP1 Missense_Mutation p.P370S 0.56 tolerated(0.25) benign(0.025) TCGA-EE-A29E-06 8 56270245 56270245 C T XKR4 Missense_Mutation p.H272Y 0.54 deleterious(0.01) possibly_damaging(0.699) TCGA-EE-A29E-06 8 56270281 56270281 G A XKR4 Missense_Mutation p.G284R 0.42 tolerated(0.24) benign(0.021) TCGA-EE-A29E-06 8 56436024 56436024 C T XKR4 Silent p.F397F 0.55 TCGA-EE-A29E-06 8 57025559 57025559 C T MOS Missense_Mutation p.R328K 0.61 deleterious(0) probably_damaging(0.996) TCGA-EE-A29E-06 8 57354100 57354100 C T PENK Missense_Mutation p.E179K 0.55 tolerated(0.43) benign(0.044) TCGA-EE-A29E-06 8 59548091 59548091 G A NSMAF Missense_Mutation p.S86F 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A29E-06 8 61178561 61178561 C T CA8 Missense_Mutation p.E114K 0.43 deleterious(0.02) possibly_damaging(0.896) TCGA-EE-A29E-06 8 62370915 62370915 C T CLVS1 Missense_Mutation p.P264L 0.28 tolerated(0.13) benign(0.173) TCGA-EE-A29E-06 8 63492222 63492222 G A NKAIN3 Missense_Mutation p.R60Q 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29E-06 8 63902730 63902730 C T NKAIN3 Missense_Mutation p.S179L 0.47 deleterious(0.01) benign(0.001) TCGA-EE-A29E-06 8 63948262 63948262 G A GGH Silent p.S59S 0.26 TCGA-EE-A29E-06 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.67 tolerated(0.51) benign(0.108) TCGA-EE-A29E-06 8 67089270 67089270 G A CRH Missense_Mutation p.P148L 0.50 tolerated(0.4) benign(0.002) TCGA-EE-A29E-06 8 67089271 67089271 G A CRH Missense_Mutation p.P148S 0.53 tolerated(0.73) benign(0.115) TCGA-EE-A29E-06 8 67759428 67759428 C G SGK3 Missense_Mutation p.P359A 0.16 deleterious(0) benign(0.339) TCGA-EE-A29E-06 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.51 tolerated(0.3) benign(0) TCGA-EE-A29E-06 8 69069575 69069575 G A PREX2 Missense_Mutation p.G1417E 0.50 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A29E-06 8 6912991 6912991 C T DEFA5 Missense_Mutation p.E83K 0.85 tolerated(0.38) benign(0.002) TCGA-EE-A29E-06 8 70517105 70517105 G A SULF1 Missense_Mutation p.E439K 0.69 tolerated(0.26) benign(0.034) TCGA-EE-A29E-06 8 70667774 70667774 C T SLCO5A1 Silent p.K381K 0.23 TCGA-EE-A29E-06 8 73480462 73480462 G A KCNB2 Missense_Mutation p.E165K 0.23 deleterious(0) possibly_damaging(0.806) TCGA-EE-A29E-06 8 73848499 73848499 C T KCNB2 Silent p.F303F 0.34 TCGA-EE-A29E-06 8 73848500 73848500 C T KCNB2 Nonsense_Mutation p.R304* 0.34 TCGA-EE-A29E-06 8 73848771 73848771 G A KCNB2 Missense_Mutation p.G394E 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 73848772 73848772 G A KCNB2 Silent p.G394G 0.53 TCGA-EE-A29E-06 8 73850006 73850006 G A KCNB2 Missense_Mutation p.E806K 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.549) TCGA-EE-A29E-06 8 74903690 74903690 C T LY96 Silent p.L5L 0.45 TCGA-EE-A29E-06 8 74922334 74922334 G A LY96 Missense_Mutation p.D101N 0.58 tolerated(0.22) benign(0.058) TCGA-EE-A29E-06 8 76471221 76471221 C T HNF4G Missense_Mutation p.L348F 0.48 deleterious(0.01) benign(0.114) TCGA-EE-A29E-06 8 76471257 76471257 G A HNF4G Missense_Mutation p.E360K 0.32 deleterious(0) probably_damaging(0.948) TCGA-EE-A29E-06 8 77617118 77617118 C T ZFHX4 Silent p.F265F 0.27 TCGA-EE-A29E-06 8 77617514 77617514 G A ZFHX4 Silent p.G397G 0.43 TCGA-EE-A29E-06 8 77763207 77763207 G A ZFHX4 Silent p.P1350P 0.29 TCGA-EE-A29E-06 8 77766752 77766752 C T ZFHX4 Missense_Mutation p.P2532L 0.26 probably_damaging(0.996) TCGA-EE-A29E-06 8 77776596 77776596 C T ZFHX4 Missense_Mutation p.S3549F 0.24 probably_damaging(0.992) TCGA-EE-A29E-06 8 86162971 86162971 C T CA13 Missense_Mutation p.P14S 0.43 deleterious(0) probably_damaging(0.957) TCGA-EE-A29E-06 8 87060847 87060847 C T PSKH2 Silent p.R334R 0.25 TCGA-EE-A29E-06 8 87076613 87076613 G A PSKH2 Missense_Mutation p.L145F 0.25 tolerated(0.11) possibly_damaging(0.766) TCGA-EE-A29E-06 8 88885042 88885042 C T DCAF4L2 Silent p.R386R 0.12 TCGA-EE-A29E-06 8 88885043 88885043 C T DCAF4L2 Missense_Mutation p.R386Q 0.14 tolerated(0.44) benign(0.014) TCGA-EE-A29E-06 8 88885815 88885815 A T DCAF4L2 Missense_Mutation p.S129T 0.50 deleterious(0.05) possibly_damaging(0.67) TCGA-EE-A29E-06 8 88886202 88886202 C T DCAF4L2 5'UTR 0.57 TCGA-EE-A29E-06 8 92374578 92374578 C T SLC26A7 Intron 0.25 TCGA-EE-A29E-06 8 92982957 92982957 C T RUNX1T1 Missense_Mutation p.V501I 0.42 tolerated(0.41) benign(0.012) TCGA-EE-A29E-06 8 92982967 92982967 C T RUNX1T1 Missense_Mutation p.M497I 0.40 deleterious(0.02) possibly_damaging(0.642) TCGA-EE-A29E-06 8 92982977 92982977 C T RUNX1T1 Missense_Mutation p.R494K 0.50 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A29E-06 8 94767232 94767232 C T TMEM67 Silent p.L30L 0.56 TCGA-EE-A29E-06 8 95262778 95262778 G A GEM Silent p.F217F 0.55 TCGA-EE-A29E-06 8 95793318 95793318 C T DPY19L4 Missense_Mutation p.P547S 0.49 deleterious(0) probably_damaging(0.997) TCGA-EE-A29E-06 8 96166783 96166783 C T PLEKHF2 Missense_Mutation p.R171C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 8 98288944 98288944 G A TSPYL5 Missense_Mutation p.P377S 0.25 deleterious(0) probably_damaging(0.956) TCGA-EE-A29E-06 8 99149177 99149177 C T POP1 Missense_Mutation p.H453Y 0.62 tolerated(0.19) benign(0.013) TCGA-EE-A29E-06 9 101073469 101073469 C T GABBR2 Missense_Mutation p.D638N 0.91 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A29E-06 9 104324684 104324684 C T RNF20 Missense_Mutation p.H970Y 0.80 deleterious(0) probably_damaging(0.975) TCGA-EE-A29E-06 9 104449125 104449125 G A GRIN3A Missense_Mutation p.R353C 0.85 deleterious(0.02) benign(0.386) TCGA-EE-A29E-06 9 104449252 104449252 G A GRIN3A Silent p.F310F 0.83 TCGA-EE-A29E-06 9 107266963 107266963 C T OR13F1 Silent p.T140T 0.89 TCGA-EE-A29E-06 9 109692838 109692838 C T ZNF462 Silent p.I1960I 0.91 TCGA-EE-A29E-06 9 109701389 109701389 G T ZNF462 Splice_Site p.X2143_splice 0.87 TCGA-EE-A29E-06 9 111965972 111965972 C T EPB41L4B Silent p.K639K 0.86 TCGA-EE-A29E-06 9 112225638 112225638 C T PTPN3 Missense_Mutation p.R26Q 0.81 tolerated(0.26) probably_damaging(0.941) TCGA-EE-A29E-06 9 113096597 113096597 C T TXNDC8 Missense_Mutation p.E10K 0.83 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29E-06 9 113173551 113173551 C T SVEP1 Missense_Mutation p.G2147E 0.80 probably_damaging(1) TCGA-EE-A29E-06 9 113547935 113547935 G A MUSK Missense_Mutation p.R572K 0.77 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 9 114187776 114187776 G A KIAA0368 Silent p.T557T 0.82 TCGA-EE-A29E-06 9 115760185 115760185 G A ZNF883 RNA 0.85 TCGA-EE-A29E-06 9 115931755 115931755 G A FKBP15 Silent p.V1078V 0.86 TCGA-EE-A29E-06 9 117169089 117169089 G A DFNB31 Silent p.L594L 1.00 TCGA-EE-A29E-06 9 117846615 117846615 G A TNC Silent p.F668F 0.78 TCGA-EE-A29E-06 9 118162708 118162708 G A DEC1 Missense_Mutation p.M28I 0.84 tolerated_low_confidence(0.1) benign(0.001) TCGA-EE-A29E-06 9 118950101 118950101 G A PAPPA Missense_Mutation p.E362K 0.72 deleterious(0.03) benign(0) TCGA-EE-A29E-06 9 119460032 119460032 C T TRIM32 Missense_Mutation p.A4V 0.86 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-EE-A29E-06 9 120475721 120475721 G A TLR4 Missense_Mutation p.E439K 0.87 tolerated(0.64) benign(0.012) TCGA-EE-A29E-06 9 120476931 120476931 G A TLR4 3'UTR 0.82 TCGA-EE-A29E-06 9 123589142 123589142 G A PSMD5 Missense_Mutation p.H239Y 0.75 deleterious(0) probably_damaging(0.968) TCGA-EE-A29E-06 9 124074640 124074640 C T GSN Silent p.S230S 0.85 TCGA-EE-A29E-06 9 125512228 125512228 C T OR1L6 Silent p.I34I 0.75 TCGA-EE-A29E-06 9 128061327 128061327 C T GAPVD1 Missense_Mutation p.R43C 0.83 deleterious(0) possibly_damaging(0.785) TCGA-EE-A29E-06 9 129641834 129641834 A G ZBTB34 Silent p.A48A 0.85 TCGA-EE-A29E-06 9 130198199 130198199 C T ZNF79 Missense_Mutation p.S82F 0.80 deleterious(0.04) possibly_damaging(0.603) TCGA-EE-A29E-06 9 130422359 130422359 C T STXBP1 Silent p.Y99Y 0.84 TCGA-EE-A29E-06 9 130550269 130550269 C T CDK9 Silent p.F103F 0.83 TCGA-EE-A29E-06 9 130688231 130688231 G A PIP5KL1 Silent p.S226S 0.83 TCGA-EE-A29E-06 9 130700157 130700157 C T DPM2 5'UTR 0.80 TCGA-EE-A29E-06 9 131117433 131117433 G A SLC27A4 Missense_Mutation p.D476N 0.88 tolerated(0.43) benign(0.11) TCGA-EE-A29E-06 9 132084114 132084114 G A C9orf106 RNA 0.95 TCGA-EE-A29E-06 9 133779687 133779687 C T FIBCD1 Missense_Mutation p.G384S 0.84 deleterious(0.04) possibly_damaging(0.586) TCGA-EE-A29E-06 9 133901756 133901756 C T LAMC3 Missense_Mutation p.A153V 0.88 tolerated(0.17) benign(0.082) TCGA-EE-A29E-06 9 133901757 133901757 C T LAMC3 Silent p.A153A 0.88 TCGA-EE-A29E-06 9 135601098 135601098 G A AK8 Missense_Mutation p.P473S 0.93 deleterious(0) possibly_damaging(0.851) TCGA-EE-A29E-06 9 135946631 135946631 C T CEL Missense_Mutation p.P584L 0.84 deleterious(0.03) possibly_damaging(0.835) TCGA-EE-A29E-06 9 136302972 136302972 C T ADAMTS13 Silent p.P513P 0.78 TCGA-EE-A29E-06 9 136302973 136302973 C T ADAMTS13 Missense_Mutation p.R514W 0.78 tolerated(0.05) benign(0.006) TCGA-EE-A29E-06 9 137619233 137619233 C T COL5A1 Missense_Mutation p.P259L 0.86 benign(0.085) TCGA-EE-A29E-06 9 138377233 138377233 C T PPP1R26 Missense_Mutation p.P293S 0.83 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A29E-06 9 138713098 138713098 G A CAMSAP1 Missense_Mutation p.P1137S 0.79 tolerated(0.58) benign(0.009) TCGA-EE-A29E-06 9 138714338 138714338 G A CAMSAP1 Silent p.P723P 0.81 TCGA-EE-A29E-06 9 138831522 138831522 G A UBAC1 Silent p.A320A 0.81 TCGA-EE-A29E-06 9 139369688 139369688 G A SEC16A Missense_Mutation p.P794S 0.84 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 9 139905529 139905529 G A ABCA2 Silent p.F1984F 0.74 TCGA-EE-A29E-06 9 139911795 139911795 G A ABCA2 Silent p.F802F 0.85 TCGA-EE-A29E-06 9 139934195 139934195 G A NPDC1 3'UTR 0.82 TCGA-EE-A29E-06 9 140242631 140242631 G A EXD3 Silent p.F630F 0.73 TCGA-EE-A29E-06 9 140638380 140638380 C T EHMT1 Silent p.S336S 0.88 TCGA-EE-A29E-06 9 14859410 14859410 G A FREM1 Silent p.I134I 0.64 TCGA-EE-A29E-06 9 15745559 15745559 C T CCDC171 Silent p.L867L 0.72 TCGA-EE-A29E-06 9 17466874 17466874 C T CNTLN Silent p.F1280F 0.71 TCGA-EE-A29E-06 9 18707036 18707036 C A ADAMTSL1 Silent p.S622S 0.60 TCGA-EE-A29E-06 9 18795486 18795486 G A ADAMTSL1 Missense_Mutation p.G1257R 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 9 2054680 2054680 C T SMARCA2 Missense_Mutation p.T377I 0.67 possibly_damaging(0.507) TCGA-EE-A29E-06 9 21141124 21141124 C T IFNW1 Missense_Mutation p.G149E 0.54 tolerated(0.07) probably_damaging(0.919) TCGA-EE-A29E-06 9 21350398 21350398 G A IFNA6 Silent p.A163A 0.66 TCGA-EE-A29E-06 9 21350703 21350703 G A IFNA6 Missense_Mutation p.P62S 0.67 deleterious(0.02) possibly_damaging(0.746) TCGA-EE-A29E-06 9 21367995 21367995 G A IFNA13 Silent p.P5P 0.62 TCGA-EE-A29E-06 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.60 TCGA-EE-A29E-06 9 27202880 27202880 T G TEK Missense_Mutation p.S658A 0.66 tolerated(0.12) benign(0.403) TCGA-EE-A29E-06 9 2831320 2831320 G A KIAA0020 Missense_Mutation p.R181C 0.73 deleterious(0) possibly_damaging(0.654) TCGA-EE-A29E-06 9 32631735 32631735 C T TAF1L Silent p.L1281L 0.74 TCGA-EE-A29E-06 9 33366686 33366686 C T NFX1 Silent p.I1033I 0.62 TCGA-EE-A29E-06 9 34107373 34107373 G A DCAF12 Missense_Mutation p.P175L 0.87 deleterious(0) probably_damaging(0.961) TCGA-EE-A29E-06 9 34500829 34500829 C T DNAI1 Silent p.A337A 0.73 TCGA-EE-A29E-06 9 35295908 35295908 C T UNC13B Missense_Mutation p.P248S 0.75 tolerated_low_confidence(1) benign(0.003) TCGA-EE-A29E-06 9 35852909 35852909 C T TMEM8B Missense_Mutation p.S302F 0.80 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 9 35957729 35957729 G A OR2S2 Missense_Mutation p.R123C 0.62 tolerated(0.06) benign(0.181) TCGA-EE-A29E-06 9 3829444 3829444 G A GLIS3 Missense_Mutation p.S841F 0.62 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29E-06 9 39361104 39361104 G A SPATA31A1 Silent p.R1114R 0.69 TCGA-EE-A29E-06 9 439338 439338 G A DOCK8 Missense_Mutation p.E1725K 0.58 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 9 4576650 4576650 C T SLC1A1 Silent p.P360P 0.58 TCGA-EE-A29E-06 9 5069174 5069174 C T JAK2 Silent p.F493F 0.68 TCGA-EE-A29E-06 9 67965140 67965140 C T ANKRD20A1 Missense_Mutation p.P430S 0.17 tolerated(0.1) possibly_damaging(0.857) TCGA-EE-A29E-06 9 69420375 69420375 G A ANKRD20A4 Missense_Mutation p.G422E 0.13 tolerated(0.18) benign(0.143) TCGA-EE-A29E-06 9 69420398 69420398 C T ANKRD20A4 Missense_Mutation p.P430S 0.26 tolerated(0.12) benign(0.216) TCGA-EE-A29E-06 9 75403289 75403289 G A TMC1 Missense_Mutation p.D307N 0.85 deleterious(0.05) benign(0.302) TCGA-EE-A29E-06 9 75407149 75407149 G A TMC1 Missense_Mutation p.E483K 0.90 tolerated(0.46) benign(0.109) TCGA-EE-A29E-06 9 75775278 75775278 C T ANXA1 Missense_Mutation p.R124C 0.87 deleterious(0) probably_damaging(0.974) TCGA-EE-A29E-06 9 75783979 75783979 G A ANXA1 Missense_Mutation p.R298K 0.83 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A29E-06 9 77245258 77245258 G A RORB Missense_Mutation p.G23E 0.91 deleterious(0) probably_damaging(0.974) TCGA-EE-A29E-06 9 77257394 77257394 C T RORB Silent p.H100H 0.86 TCGA-EE-A29E-06 9 77339484 77339484 C T TRPM6 3'UTR 0.93 TCGA-EE-A29E-06 9 77403532 77403532 C T TRPM6 Missense_Mutation p.E889K 0.82 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 9 78547391 78547391 G A PCSK5 Missense_Mutation p.E97K 0.83 deleterious(0) possibly_damaging(0.772) TCGA-EE-A29E-06 9 79322791 79322791 C T PRUNE2 Missense_Mutation p.E1467K 0.79 tolerated(0.08) benign(0.059) TCGA-EE-A29E-06 9 79932584 79932584 C T VPS13A Silent p.I1642I 0.90 TCGA-EE-A29E-06 9 8341692 8341692 C T PTPRD Splice_Site p.X1649_splice 0.66 TCGA-EE-A29E-06 9 8500768 8500768 C T PTPRD Missense_Mutation p.R705Q 0.63 deleterious(0) benign(0) TCGA-EE-A29E-06 9 85905579 85905579 T C FRMD3 Silent p.E378E 0.89 TCGA-EE-A29E-06 9 86554574 86554574 A G C9orf64 Missense_Mutation p.L293P 0.90 deleterious(0) probably_damaging(0.983) TCGA-EE-A29E-06 9 90312085 90312085 C T DAPK1 Silent p.F859F 0.97 TCGA-EE-A29E-06 9 90535308 90535308 C T SPATA31C1 RNA 0.85 TCGA-EE-A29E-06 9 90535652 90535652 C T SPATA31C1 RNA 0.87 TCGA-EE-A29E-06 9 92007373 92007373 G A SEMA4D Missense_Mutation p.P196L 0.79 tolerated(0.28) benign(0.063) TCGA-EE-A29E-06 9 93650881 93650881 G A SYK Missense_Mutation p.D603N 0.79 tolerated(0.44) benign(0.006) TCGA-EE-A29E-06 9 96097807 96097807 G A C9orf129 Missense_Mutation p.H72Y 0.65 deleterious_low_confidence(0) benign(0.291) TCGA-EE-A29E-06 9 96097810 96097810 G A C9orf129 Missense_Mutation p.P71S 0.70 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-EE-A29E-06 9 98220325 98220325 G A PTCH1 Silent p.F1046F 0.79 TCGA-EE-A29E-06 X 100078283 100078283 C T CSTF2 Missense_Mutation p.L104F 0.89 tolerated(0.06) probably_damaging(0.988) TCGA-EE-A29E-06 X 100169665 100169665 C T XKRX Missense_Mutation p.D338N 0.82 deleterious(0) benign(0.158) TCGA-EE-A29E-06 X 10094265 10094265 C T WWC3 Silent p.P675P 0.74 TCGA-EE-A29E-06 X 101098243 101098243 C T NXF5 5'UTR 0.90 TCGA-EE-A29E-06 X 101971489 101971489 C T GPRASP2 Silent p.V564V 0.83 TCGA-EE-A29E-06 X 102333497 102333497 C T NXF3 Missense_Mutation p.S481N 0.84 tolerated(0.15) benign(0.001) TCGA-EE-A29E-06 X 103045532 103045532 C T PLP1 3'UTR 0.89 TCGA-EE-A29E-06 X 104463949 104463949 G A TEX13A Silent p.S309S 0.77 TCGA-EE-A29E-06 X 105279185 105279185 G A SERPINA7 Missense_Mutation p.P272S 0.85 deleterious(0) possibly_damaging(0.771) TCGA-EE-A29E-06 X 106840597 106840597 G A FRMPD3 Silent p.G529G 0.77 TCGA-EE-A29E-06 X 107414671 107414671 C T COL4A6 Missense_Mutation p.E1076K 0.78 benign(0.18) TCGA-EE-A29E-06 X 107814643 107814643 G A COL4A5 Missense_Mutation p.G129R 0.78 unknown(0) TCGA-EE-A29E-06 X 107869005 107869005 C T COL4A5 Silent p.I1029I 0.76 TCGA-EE-A29E-06 X 109764320 109764320 G A TDGF1P3 RNA 0.75 TCGA-EE-A29E-06 X 109764416 109764416 C T TDGF1P3 RNA 0.65 TCGA-EE-A29E-06 X 110435809 110435809 G A PAK3 Missense_Mutation p.E355K 0.95 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29E-06 X 110439848 110439848 C T PAK3 Missense_Mutation p.L499F 0.82 deleterious(0) probably_damaging(0.998) TCGA-EE-A29E-06 X 110491989 110491989 T C CAPN6 Missense_Mutation p.N431S 0.76 deleterious(0) possibly_damaging(0.874) TCGA-EE-A29E-06 X 110544831 110544831 C T DCX 3'UTR 0.81 TCGA-EE-A29E-06 X 110574170 110574170 C T DCX Missense_Mutation p.R384Q 0.83 tolerated(0.11) benign(0.402) TCGA-EE-A29E-06 X 110951451 110951451 C T ALG13 Missense_Mutation p.P194S 0.79 tolerated_low_confidence(0.57) benign(0) TCGA-EE-A29E-06 X 114347894 114347894 C T LRCH2 Missense_Mutation p.R728K 0.70 tolerated(1) benign(0.017) TCGA-EE-A29E-06 X 117576579 117576579 T A WDR44 Missense_Mutation p.L774M 0.79 tolerated(0.08) possibly_damaging(0.644) TCGA-EE-A29E-06 X 118221966 118221966 G A KIAA1210 Missense_Mutation p.P1076L 0.91 tolerated(0.2) benign(0.142) TCGA-EE-A29E-06 X 119037548 119037548 C T AKAP14 Missense_Mutation p.S87L 0.89 tolerated(0.8) benign(0.175) TCGA-EE-A29E-06 X 119664110 119664110 C T CUL4B Splice_Site p.X832_splice 0.88 TCGA-EE-A29E-06 X 120008882 120008882 C T CT47B1 Missense_Mutation p.A215T 0.76 tolerated(0.23) unknown(0) TCGA-EE-A29E-06 X 123539080 123539080 C T TENM1 Missense_Mutation p.G1731D 0.77 deleterious(0.01) benign(0.367) TCGA-EE-A29E-06 X 123556122 123556122 C T TENM1 Missense_Mutation p.G1491S 0.74 tolerated(0.17) benign(0.118) TCGA-EE-A29E-06 X 123779147 123779147 C T TENM1 Silent p.E574E 0.87 TCGA-EE-A29E-06 X 127185270 127185270 G A ACTRT1 Missense_Mutation p.L306F 0.86 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A29E-06 X 12903628 12903628 C T TLR7 Intron 0.83 TCGA-EE-A29E-06 X 129045003 129045003 C T UTP14A Silent p.V86V 0.89 TCGA-EE-A29E-06 X 130409593 130409593 C T IGSF1 Missense_Mutation p.G1020R 0.88 tolerated(0.32) benign(0.037) TCGA-EE-A29E-06 X 131206371 131206371 G A MST4 Silent p.K336K 0.85 TCGA-EE-A29E-06 X 132162061 132162061 G A USP26 Missense_Mutation p.S63F 0.78 tolerated(0.4) benign(0.239) TCGA-EE-A29E-06 X 132351975 132351975 C T TFDP3 Missense_Mutation p.E105K 0.80 deleterious(0.02) possibly_damaging(0.636) TCGA-EE-A29E-06 X 134988657 134988657 G A SAGE1 Missense_Mutation p.R228Q 0.70 tolerated(0.18) benign(0) TCGA-EE-A29E-06 X 134992272 134992272 C T SAGE1 Missense_Mutation p.P603S 0.81 tolerated(0.1) probably_damaging(0.986) TCGA-EE-A29E-06 X 135428482 135428482 G A GPR112 Missense_Mutation p.E873K 0.88 deleterious(0.03) possibly_damaging(0.734) TCGA-EE-A29E-06 X 135430785 135430785 C T GPR112 Silent p.I1640I 0.78 TCGA-EE-A29E-06 X 135494424 135494424 G A GPR112 Missense_Mutation p.G2979E 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A29E-06 X 136112601 136112601 G A GPR101 Silent p.S411S 0.53 TCGA-EE-A29E-06 X 13778281 13778281 C T OFD1 Missense_Mutation p.R568C 0.75 tolerated(0.07) benign(0.014) TCGA-EE-A29E-06 X 139038471 139038471 C T CXorf66 Missense_Mutation p.E224K 0.81 tolerated(0.51) possibly_damaging(0.801) TCGA-EE-A29E-06 X 139038684 139038684 C T CXorf66 Missense_Mutation p.G153R 0.72 tolerated(0.38) benign(0.001) TCGA-EE-A29E-06 X 139866600 139866600 C T CDR1 5'UTR 0.79 TCGA-EE-A29E-06 X 140008356 140008356 C T MIR320D2 RNA 0.94 TCGA-EE-A29E-06 X 140926198 140926198 C T MAGEC3 Missense_Mutation p.P33S 0.83 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A29E-06 X 140969287 140969287 T C MAGEC3 Missense_Mutation p.L205P 0.80 deleterious(0) benign(0.068) TCGA-EE-A29E-06 X 140996386 140996386 C T MAGEC1 Missense_Mutation p.R1066C 0.92 tolerated(0.21) unknown(0) TCGA-EE-A29E-06 X 140996397 140996397 C T MAGEC1 Silent p.F1069F 0.90 TCGA-EE-A29E-06 X 141290876 141290876 G A MAGEC2 Silent p.L300L 0.77 TCGA-EE-A29E-06 X 142716504 142716504 C T SLITRK4 Silent p.R807R 0.88 TCGA-EE-A29E-06 X 142718198 142718198 C T SLITRK4 Missense_Mutation p.E243K 0.72 deleterious(0) probably_damaging(0.98) TCGA-EE-A29E-06 X 14548226 14548226 T A GLRA2 Missense_Mutation p.F16Y 0.69 tolerated_low_confidence(0.42) benign(0) TCGA-EE-A29E-06 X 150832763 150832763 G A PASD1 Missense_Mutation p.M338I 0.78 tolerated(0.63) benign(0.089) TCGA-EE-A29E-06 X 150911752 150911752 C T CNGA2 Silent p.F259F 0.89 TCGA-EE-A29E-06 X 151303319 151303319 C T MAGEA10 Silent p.G258G 0.75 TCGA-EE-A29E-06 X 151303487 151303487 G A MAGEA10 Silent p.V202V 0.77 TCGA-EE-A29E-06 X 151562957 151562957 G A GABRA3 Intron 0.89 TCGA-EE-A29E-06 X 152771449 152771449 C T BGN Silent p.S160S 0.86 TCGA-EE-A29E-06 X 153421925 153421925 C T OPN1LW Missense_Mutation p.P301S 0.82 deleterious(0.04) probably_damaging(1) TCGA-EE-A29E-06 X 153590643 153590643 C T FLNA Missense_Mutation p.V875M 0.96 deleterious(0) probably_damaging(0.999) TCGA-EE-A29E-06 X 153667183 153667183 C T GDI1 Silent p.L76L 0.88 TCGA-EE-A29E-06 X 153671139 153671139 C T GDI1 3'UTR 0.89 TCGA-EE-A29E-06 X 17153431 17153431 C T REPS2 Silent p.F570F 0.83 TCGA-EE-A29E-06 X 18972393 18972393 G A PHKA2 Silent p.A72A 0.74 TCGA-EE-A29E-06 X 20073891 20073891 C T MAP7D2 Intron 0.78 TCGA-EE-A29E-06 X 21761903 21761903 G A SMPX Missense_Mutation p.P33S 0.79 tolerated_low_confidence(0.54) probably_damaging(0.996) TCGA-EE-A29E-06 X 26212488 26212488 G A MAGEB6 Silent p.E175E 0.84 TCGA-EE-A29E-06 X 30714762 30714762 C T GK Missense_Mutation p.P231S 0.84 deleterious(0) probably_damaging(0.954) TCGA-EE-A29E-06 X 3229200 3229200 G A MXRA5 Silent p.I2348I 0.88 TCGA-EE-A29E-06 X 3239094 3239094 C T MXRA5 Silent p.V1544V 0.92 TCGA-EE-A29E-06 X 3240723 3240723 A G MXRA5 Silent p.L1001L 0.90 TCGA-EE-A29E-06 X 3240724 3240724 A G MXRA5 Missense_Mutation p.L1001P 0.90 tolerated(0.15) benign(0.002) TCGA-EE-A29E-06 X 34148524 34148524 G A FAM47A Silent p.S624S 0.90 TCGA-EE-A29E-06 X 34962065 34962065 G A FAM47B Missense_Mutation p.E373K 0.83 tolerated(0.28) benign(0.359) TCGA-EE-A29E-06 X 35820403 35820403 C T MAGEB16 Silent p.V30V 0.85 TCGA-EE-A29E-06 X 37026573 37026573 C T FAM47C Silent p.F30F 0.90 TCGA-EE-A29E-06 X 37028481 37028481 C T FAM47C Silent p.L666L 0.58 TCGA-EE-A29E-06 X 37029030 37029030 G A FAM47C Silent p.S849S 0.84 TCGA-EE-A29E-06 X 39923790 39923790 G A BCOR Missense_Mutation p.P1101S 0.86 tolerated(0.35) benign(0.021) TCGA-EE-A29E-06 X 39923791 39923791 A T BCOR Silent p.L1100L 0.85 TCGA-EE-A29E-06 X 40572218 40572218 A T MED14 Silent p.V243V 0.87 TCGA-EE-A29E-06 X 41203558 41203558 C T DDX3X Nonsense_Mutation p.R311* 0.85 TCGA-EE-A29E-06 X 41437616 41437616 G A CASK Nonsense_Mutation p.Q494* 0.91 TCGA-EE-A29E-06 X 48047102 48047102 C T SSX5 Missense_Mutation p.E219K 0.82 tolerated(0.13) probably_damaging(0.998) TCGA-EE-A29E-06 X 52677369 52677369 C T SSX7 Silent p.G136G 0.80 TCGA-EE-A29E-06 X 54161361 54161361 G A FAM120C Missense_Mutation p.P507S 0.87 tolerated(0.09) benign(0.062) TCGA-EE-A29E-06 X 55650562 55650562 C T FOXR2 Missense_Mutation p.P140S 0.85 tolerated(0.09) benign(0.011) TCGA-EE-A29E-06 X 63409897 63409897 G A AMER1 Silent p.V1090V 0.78 TCGA-EE-A29E-06 X 64139089 64139089 G A ZC4H2 Intron 0.80 TCGA-EE-A29E-06 X 6451765 6451765 G A VCX3A 3'UTR 0.51 TCGA-EE-A29E-06 X 65825019 65825019 G A EDA2R Missense_Mutation p.P46L 1.00 deleterious(0) benign(0.189) TCGA-EE-A29E-06 X 69366643 69366643 A T IGBP1 Missense_Mutation p.I215L 0.63 tolerated(0.35) benign(0.012) TCGA-EE-A29E-06 X 70607247 70607247 C T TAF1 Missense_Mutation p.P808L 0.85 deleterious(0) possibly_damaging(0.798) TCGA-EE-A29E-06 X 70836739 70836739 C T CXCR3 Missense_Mutation p.D242N 0.71 deleterious(0.03) benign(0.301) TCGA-EE-A29E-06 X 71360221 71360221 A T NHSL2 Silent p.S941S 0.93 TCGA-EE-A29E-06 X 73045928 73045928 C T XIST RNA 0.81 TCGA-EE-A29E-06 X 73050937 73050937 C T XIST RNA 0.53 TCGA-EE-A29E-06 X 73062678 73062678 T A XIST RNA 0.81 TCGA-EE-A29E-06 X 73063783 73063783 C T XIST RNA 0.90 TCGA-EE-A29E-06 X 73068992 73068992 G A XIST RNA 0.94 TCGA-EE-A29E-06 X 73811373 73811373 G A RLIM Missense_Mutation p.H593Y 0.83 deleterious(0.01) probably_damaging(1) TCGA-EE-A29E-06 X 73963455 73963455 G A KIAA2022 Nonsense_Mutation p.R313* 0.79 TCGA-EE-A29E-06 X 76225921 76225921 C T MIR325 RNA 0.80 TCGA-EE-A29E-06 X 7811698 7811698 G A VCX Missense_Mutation p.E88K 0.31 tolerated(0.32) unknown(0) TCGA-EE-A29E-06 X 78216791 78216791 C T P2RY10 Silent p.P258P 0.86 TCGA-EE-A29E-06 X 78616612 78616612 C A ITM2A Missense_Mutation p.V256F 0.68 deleterious(0.01) benign(0.318) TCGA-EE-A29E-06 X 83128069 83128069 C T CYLC1 Missense_Mutation p.S118F 0.92 tolerated(0.21) probably_damaging(0.983) TCGA-EE-A29E-06 X 84362877 84362877 C T SATL1 Silent p.T366T 0.83 TCGA-EE-A29E-06 X 84534341 84534341 G A POF1B 3'UTR 0.80 TCGA-EE-A29E-06 X 84562249 84562249 C T POF1B Missense_Mutation p.D362N 0.89 deleterious(0.02) benign(0.057) TCGA-EE-A29E-06 X 86772938 86772938 C T KLHL4 Silent p.I14I 0.74 TCGA-EE-A29E-06 X 91873673 91873673 C T PCDH11X Missense_Mutation p.P1260S 0.67 tolerated_low_confidence(0.13) probably_damaging(0.993) TCGA-EE-A29E-06 X 96140057 96140057 C T RPA4 Missense_Mutation p.P250S 0.91 tolerated(1) benign(0.023) TCGA-EE-A29E-06 Y 16733977 16733977 G A NLGN4Y 5'UTR 1.00 TCGA-EE-A29E-06 Y 3447612 3447612 C T TGIF2LY Silent p.L109L 0.80 TCGA-EE-A29E-06 Y 3447947 3447947 C T TGIF2LY 3'UTR 0.86 TCGA-EE-A29E-06 Y 6114348 6114348 G A TSPY2 Silent p.E13E 0.80 TCGA-EE-A29E-06 Y 6115606 6115606 G A TSPY2 Missense_Mutation p.E190K 0.71 tolerated(0.4) benign(0.049) TCGA-EE-A29G-06 10 102056771 102056771 C T PKD2L1 Missense_Mutation p.S384N 0.16 tolerated(0.09) possibly_damaging(0.861) TCGA-EE-A29G-06 10 104135128 104135128 C T GBF1 Silent p.L1224L 0.19 TCGA-EE-A29G-06 10 124336089 124336089 G A DMBT1 Missense_Mutation p.G153E 0.22 deleterious(0.03) probably_damaging(1) TCGA-EE-A29G-06 10 124399818 124399818 C T DMBT1 Missense_Mutation p.P2273L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 10 124610020 124610020 G A FAM24B Silent p.I4I 0.22 TCGA-EE-A29G-06 10 15714643 15714643 G A ITGA8 Missense_Mutation p.S261F 0.21 tolerated(0.06) possibly_damaging(0.459) TCGA-EE-A29G-06 10 24831694 24831694 C T KIAA1217 Nonsense_Mutation p.Q1203* 0.17 TCGA-EE-A29G-06 10 52103485 52103485 C T SGMS1 Missense_Mutation p.M130I 0.21 tolerated(0.19) benign(0.017) TCGA-EE-A29G-06 10 55582494 55582494 A G PCDH15 Silent p.F1666F 0.23 TCGA-EE-A29G-06 10 55600246 55600246 G A PCDH15 Missense_Mutation p.R1273C 0.11 deleterious(0) probably_damaging(0.932) TCGA-EE-A29G-06 10 61894132 61894132 C T ANK3 Splice_Site p.X913_splice 0.41 TCGA-EE-A29G-06 10 84738844 84738844 G A NRG3 Silent p.R517R 0.17 TCGA-EE-A29G-06 10 84744859 84744859 C T NRG3 Missense_Mutation p.S530L 0.09 deleterious_low_confidence(0.04) benign(0.006) TCGA-EE-A29G-06 10 93579031 93579031 A T TNKS2 Missense_Mutation p.E175D 0.30 tolerated(0.61) benign(0.001) TCGA-EE-A29G-06 10 96018860 96018860 C T PLCE1 Missense_Mutation p.T1256I 0.16 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A29G-06 11 102708107 102708107 C T MMP3 Missense_Mutation p.E419K 0.13 deleterious(0) possibly_damaging(0.857) TCGA-EE-A29G-06 11 105923628 105923628 C T KBTBD3 Silent p.V596V 0.09 TCGA-EE-A29G-06 11 119229960 119229960 G A USP2 Missense_Mutation p.P348S 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A29G-06 11 12280079 12280079 G A MICAL2 Silent p.R1069R 0.16 TCGA-EE-A29G-06 11 123886812 123886812 C T OR10G4 Silent p.F177F 0.09 TCGA-EE-A29G-06 11 132290109 132290109 G A OPCML Missense_Mutation p.A339V 0.16 tolerated(1) benign(0.001) TCGA-EE-A29G-06 11 18955621 18955621 G A MRGPRX1 Silent p.F237F 0.19 TCGA-EE-A29G-06 11 2156625 2156625 G A IGF2 Silent p.F99F 0.26 TCGA-EE-A29G-06 11 55541585 55541585 C T OR5D13 Silent p.F224F 0.21 TCGA-EE-A29G-06 11 55579281 55579281 C T OR5L1 Silent p.F113F 0.14 TCGA-EE-A29G-06 11 56043872 56043872 G T OR5T1 Missense_Mutation p.C253F 0.18 deleterious(0) probably_damaging(0.946) TCGA-EE-A29G-06 11 56058178 56058178 G A OR8H1 Missense_Mutation p.R121C 0.26 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A29G-06 11 56310098 56310098 G A OR5M11 Silent p.I212I 0.13 TCGA-EE-A29G-06 11 61081357 61081357 T C DDB1 Missense_Mutation p.Y613C 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29G-06 11 63764603 63764603 G A OTUB1 Missense_Mutation p.D169N 0.21 deleterious(0.05) probably_damaging(0.96) TCGA-EE-A29G-06 11 65124731 65124731 C T TIGD3 3'UTR 0.33 TCGA-EE-A29G-06 11 66478105 66478105 G A SPTBN2 Nonsense_Mutation p.Q341* 0.13 TCGA-EE-A29G-06 11 7441752 7441752 G A SYT9 Silent p.E451E 0.19 TCGA-EE-A29G-06 11 75282859 75282859 A G SERPINH1 Missense_Mutation p.I330V 0.16 tolerated(1) benign(0.008) TCGA-EE-A29G-06 11 87016975 87016975 C T TMEM135 Intron 0.18 TCGA-EE-A29G-06 11 89907060 89907060 A C NAALAD2 Silent p.S493S 0.13 TCGA-EE-A29G-06 12 11506190 11506190 C T PRB1 Missense_Mutation p.G150R 0.08 tolerated_low_confidence(0.29) unknown(0) TCGA-EE-A29G-06 12 11546119 11546119 C T PRB2 Missense_Mutation p.R298Q 0.11 tolerated_low_confidence(0.36) unknown(0) TCGA-EE-A29G-06 12 118199021 118199021 G A KSR2 Missense_Mutation p.P261S 0.12 deleterious(0.02) benign(0.115) TCGA-EE-A29G-06 12 118405883 118405883 C T KSR2 Missense_Mutation p.E60K 0.06 deleterious(0.02) benign(0.005) TCGA-EE-A29G-06 12 132394839 132394839 G A ULK1 Silent p.S283S 0.12 TCGA-EE-A29G-06 12 15734656 15734656 C T PTPRO Missense_Mutation p.A1059V 0.09 tolerated(0.31) benign(0.001) TCGA-EE-A29G-06 12 32866276 32866276 T C DNM1L Missense_Mutation p.L197P 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 12 33579198 33579198 C T SYT10 Silent p.E128E 0.08 TCGA-EE-A29G-06 12 33579199 33579199 T C SYT10 Missense_Mutation p.E128G 0.08 deleterious(0) probably_damaging(0.995) TCGA-EE-A29G-06 12 369019 369019 C T SLC6A13 Missense_Mutation p.G67E 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A29G-06 12 40012941 40012941 G A ABCD2 Silent p.F159F 0.13 TCGA-EE-A29G-06 12 47186965 47186965 T C SLC38A4 Intron 0.15 TCGA-EE-A29G-06 12 48962902 48962902 G A LALBA Silent p.V85V 0.10 TCGA-EE-A29G-06 12 49255887 49255887 C T RND1 Missense_Mutation p.D75N 0.10 deleterious(0.02) possibly_damaging(0.835) TCGA-EE-A29G-06 12 51888782 51888782 C T SLC4A8 Silent p.F941F 0.13 TCGA-EE-A29G-06 12 53002076 53002076 C T KRT73 Silent p.G509G 0.12 TCGA-EE-A29G-06 12 54858877 54858877 G A GTSF1 Missense_Mutation p.P31S 0.07 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A29G-06 12 55252002 55252002 C T MUCL1 Silent p.L83L 0.13 TCGA-EE-A29G-06 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.08 tolerated_low_confidence(0.15) benign(0.32) TCGA-EE-A29G-06 12 56030861 56030861 C G OR10P1 Missense_Mutation p.F62L 0.16 deleterious(0.02) benign(0.165) TCGA-EE-A29G-06 12 70933765 70933765 G A PTPRB Missense_Mutation p.R1878C 0.10 deleterious(0) probably_damaging(0.944) TCGA-EE-A29G-06 12 7521977 7521977 C T CD163L1 Missense_Mutation p.E1339K 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 12 75875797 75875797 G A GLIPR1 Missense_Mutation p.E120K 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 12 8374566 8374566 G A FAM90A1 Missense_Mutation p.S416F 0.08 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A29G-06 12 85264378 85264378 G A SLC6A15 Silent p.F458F 0.17 TCGA-EE-A29G-06 12 93139326 93139326 G A PLEKHG7 Missense_Mutation p.E92K 0.11 deleterious(0.01) possibly_damaging(0.524) TCGA-EE-A29G-06 13 110819513 110819513 C T COL4A1 Missense_Mutation p.G1314E 0.07 probably_damaging(1) TCGA-EE-A29G-06 13 110828850 110828850 A C COL4A1 Silent p.G993G 0.11 TCGA-EE-A29G-06 13 114287473 114287473 T C TFDP1 Missense_Mutation p.L116P 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 13 21620181 21620181 C G LATS2 5'UTR 0.22 TCGA-EE-A29G-06 13 28608116 28608116 C T FLT3 Missense_Mutation p.G617E 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A29G-06 13 46716547 46716547 T A LCP1 Missense_Mutation p.N461I 0.10 deleterious(0) probably_damaging(0.968) TCGA-EE-A29G-06 13 50204908 50204908 G A ARL11 Missense_Mutation p.D109N 0.14 tolerated(0.71) benign(0.025) TCGA-EE-A29G-06 13 53282744 53282744 C G LECT1 Missense_Mutation p.G239A 0.17 tolerated(0.6) benign(0.001) TCGA-EE-A29G-06 13 84454471 84454471 C T SLITRK1 Missense_Mutation p.R391Q 0.18 tolerated(0.13) benign(0.03) TCGA-EE-A29G-06 13 95858840 95858840 G A ABCC4 Silent p.F369F 0.08 TCGA-EE-A29G-06 13 99489772 99489772 A G DOCK9 Silent p.L1407L 0.17 TCGA-EE-A29G-06 14 24718595 24718595 C T TGM1 Missense_Mutation p.G793E 0.09 tolerated_low_confidence(0.13) benign(0.05) TCGA-EE-A29G-06 14 24885124 24885124 C T NYNRIN Missense_Mutation p.P1390L 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29G-06 14 33004824 33004824 C T AKAP6 Missense_Mutation p.S130F 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A29G-06 14 63246485 63246485 G A KCNH5 Silent p.F660F 0.09 TCGA-EE-A29G-06 14 65054821 65054821 G A PPP1R36 Splice_Site p.X297_splice 0.08 TCGA-EE-A29G-06 14 91760534 91760534 C T CCDC88C Silent p.E1365E 0.06 TCGA-EE-A29G-06 15 22933650 22933650 T C CYFIP1 Missense_Mutation p.I220T 0.09 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29G-06 15 24922823 24922823 C T NPAP1 Silent p.S603S 0.26 TCGA-EE-A29G-06 15 25468337 25468337 G A SNORD115-27 3'Flank 0.13 TCGA-EE-A29G-06 15 25936910 25936910 G A ATP10A Silent p.I1039I 0.20 TCGA-EE-A29G-06 15 40675119 40675119 C T KNSTRN Missense_Mutation p.P28L 0.22 deleterious_low_confidence(0.03) benign(0.046) TCGA-EE-A29G-06 15 43892249 43892249 G A STRC Silent p.V1716V 0.16 TCGA-EE-A29G-06 15 63955362 63955362 G A HERC1 Missense_Mutation p.R2908W 0.11 probably_damaging(0.997) TCGA-EE-A29G-06 15 71302157 71302157 C T LRRC49 Silent p.F478F 0.21 TCGA-EE-A29G-06 15 74173842 74173842 G A TBC1D21 Missense_Mutation p.E55K 0.18 tolerated(0.77) benign(0.031) TCGA-EE-A29G-06 15 91769448 91769448 G A SV2B 5'UTR 0.09 TCGA-EE-A29G-06 16 15704908 15704908 G A KIAA0430 Silent p.I1225I 0.22 TCGA-EE-A29G-06 16 20976501 20976501 G A DNAH3 Missense_Mutation p.A2902V 0.24 deleterious(0) probably_damaging(0.982) TCGA-EE-A29G-06 16 22135021 22135021 G A VWA3A Missense_Mutation p.E509K 0.22 deleterious(0) probably_damaging(0.97) TCGA-EE-A29G-06 16 23415116 23415116 G A COG7 Nonsense_Mutation p.R568* 0.20 TCGA-EE-A29G-06 16 28330371 28330371 C T SBK1 Silent p.F94F 0.10 TCGA-EE-A29G-06 16 29974552 29974552 C T TMEM219 Missense_Mutation p.L30F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29G-06 16 29990310 29990310 T - TAOK2 Frame_Shift_Del p.Q124Rfs*3 0.20 TCGA-EE-A29G-06 16 30129473 30129473 G A MAPK3 Silent p.F185F 0.20 TCGA-EE-A29G-06 16 31141410 31141410 C T KAT8 Missense_Mutation p.P282S 0.18 tolerated(0.1) possibly_damaging(0.883) TCGA-EE-A29G-06 16 48218385 48218385 G A ABCC11 Missense_Mutation p.S1075F 0.19 deleterious(0) possibly_damaging(0.839) TCGA-EE-A29G-06 16 51173168 51173168 G A SALL1 Missense_Mutation p.L989F 0.10 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A29G-06 16 55880368 55880368 G A CES5A Missense_Mutation p.P604S 0.19 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A29G-06 16 57600608 57600608 C T GPR114 Missense_Mutation p.S215F 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A29G-06 16 61859019 61859019 G A CDH8 Silent p.I244I 0.11 TCGA-EE-A29G-06 16 84271028 84271028 G A KCNG4 Missense_Mutation p.P22S 0.14 tolerated_low_confidence(0.49) benign(0.021) TCGA-EE-A29G-06 16 84922916 84922916 G T CRISPLD2 Silent p.V462V 0.12 TCGA-EE-A29G-06 17 11535910 11535910 G A DNAH9 Missense_Mutation p.E509K 0.15 benign(0.098) TCGA-EE-A29G-06 17 17120402 17120402 G T FLCN Nonsense_Mutation p.S386* 0.10 TCGA-EE-A29G-06 17 1840442 1840442 G A RTN4RL1 Missense_Mutation p.T225I 0.25 tolerated(0.13) possibly_damaging(0.702) TCGA-EE-A29G-06 17 2323568 2323568 G A METTL16 Missense_Mutation p.P462L 0.15 tolerated_low_confidence(0.1) benign(0.016) TCGA-EE-A29G-06 17 27042487 27042487 G A RAB34 Silent p.L197L 0.09 TCGA-EE-A29G-06 17 28772936 28772936 C T CPD Missense_Mutation p.S924L 0.10 tolerated(0.21) benign(0.025) TCGA-EE-A29G-06 17 33769237 33769237 G C SLFN13 Missense_Mutation p.L423V 0.12 deleterious(0) probably_damaging(0.984) TCGA-EE-A29G-06 17 37186429 37186429 C T CTD-2206N4.2 5'Flank 0.09 TCGA-EE-A29G-06 17 37186430 37186430 C T CTD-2206N4.2 5'Flank 0.09 TCGA-EE-A29G-06 17 41879100 41879100 G A MPP3 Missense_Mutation p.T576I 0.10 deleterious(0.03) benign(0.001) TCGA-EE-A29G-06 17 43585532 43585532 A T LRRC37A4P Intron 0.11 TCGA-EE-A29G-06 17 48262930 48262930 G A COL1A1 Missense_Mutation p.A1443V 0.14 unknown(0) TCGA-EE-A29G-06 17 60766270 60766270 G A MRC2 Missense_Mutation p.D1095N 0.12 tolerated(0.3) possibly_damaging(0.804) TCGA-EE-A29G-06 17 62796513 62796513 T A PLEKHM1P RNA 0.13 TCGA-EE-A29G-06 17 64225487 64225487 G A APOH Missense_Mutation p.P4L 0.16 tolerated(0.31) benign(0.008) TCGA-EE-A29G-06 17 65899939 65899939 A G BPTF Missense_Mutation p.K860E 0.19 possibly_damaging(0.76) TCGA-EE-A29G-06 17 72539014 72539014 G A CD300C Silent p.P171P 0.14 TCGA-EE-A29G-06 17 73484131 73484131 C T KIAA0195 Silent p.N176N 0.16 TCGA-EE-A29G-06 17 74469098 74469098 G A RHBDF2 Silent p.F662F 0.11 TCGA-EE-A29G-06 17 9631342 9631342 T C USP43 Missense_Mutation p.S803P 0.09 tolerated(0.07) benign(0.008) TCGA-EE-A29G-06 18 21649138 21649138 C T TTC39C Silent p.S121S 0.09 TCGA-EE-A29G-06 18 31323893 31323893 C T ASXL3 Missense_Mutation p.P1361S 0.13 benign(0.018) TCGA-EE-A29G-06 18 33706343 33706343 G A SLC39A6 Missense_Mutation p.P210S 0.11 tolerated(0.76) benign(0.002) TCGA-EE-A29G-06 18 43842988 43842988 G A C18orf25 Nonsense_Mutation p.W373* 0.13 TCGA-EE-A29G-06 18 77063667 77063667 C T ATP9B Missense_Mutation p.A492V 0.13 tolerated(0.67) benign(0.005) TCGA-EE-A29G-06 18 9256464 9256464 G A ANKRD12 Missense_Mutation p.E1067K 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A29G-06 19 10449497 10449497 G A ICAM3 Silent p.S68S 0.22 TCGA-EE-A29G-06 19 15586637 15586637 G A PGLYRP2 Missense_Mutation p.L282F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 19 16000503 16000503 C T CYP4F2 Silent p.E216E 0.14 TCGA-EE-A29G-06 19 22156964 22156964 C T ZNF208 Missense_Mutation p.G291D 0.19 deleterious(0.02) possibly_damaging(0.472) TCGA-EE-A29G-06 19 33333197 33333197 G A SLC7A9 Silent p.I367I 0.22 TCGA-EE-A29G-06 19 35449031 35449031 G A ZNF792 Silent p.T576T 0.17 TCGA-EE-A29G-06 19 37975746 37975746 C T ZNF570 Missense_Mutation p.H408Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-EE-A29G-06 19 42848171 42848171 T C MEGF8 Silent p.S578S 0.09 TCGA-EE-A29G-06 19 42880568 42880568 C T MEGF8 Missense_Mutation p.R2660C 0.23 deleterious(0) probably_damaging(0.922) TCGA-EE-A29G-06 19 44982298 44982298 C A ZNF180 Missense_Mutation p.A134S 0.11 tolerated(1) benign(0.001) TCGA-EE-A29G-06 19 46664099 46664099 C T IGFL2 Missense_Mutation p.S112F 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A29G-06 19 51875550 51875550 C G NKG7 Missense_Mutation p.V57L 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29G-06 19 54745472 54745472 G A LILRA6 Missense_Mutation p.P213L 0.10 tolerated(0.37) benign(0.034) TCGA-EE-A29G-06 19 55247447 55247447 G A KIR3DL3 Missense_Mutation p.E373K 0.11 tolerated(0.71) benign(0.146) TCGA-EE-A29G-06 19 55354350 55354350 C T KIR2DS4 Missense_Mutation p.P224S 0.12 deleterious_low_confidence(0) benign(0.243) TCGA-EE-A29G-06 19 57326051 57326051 C T PEG3 Silent p.L1253L 0.10 TCGA-EE-A29G-06 19 57641091 57641091 T A USP29 Missense_Mutation p.L350I 0.14 tolerated(0.06) benign(0.429) TCGA-EE-A29G-06 19 57642855 57642855 G A USP29 3'UTR 0.15 TCGA-EE-A29G-06 19 57646378 57646378 C T ZIM3 Missense_Mutation p.G443R 0.11 deleterious(0.02) benign(0.028) TCGA-EE-A29G-06 19 9000475 9000475 C T MUC16 Silent p.K13503K 0.20 TCGA-EE-A29G-06 19 9090729 9090729 C T MUC16 Silent p.E362E 0.19 TCGA-EE-A29G-06 1 110217428 110217428 C T GSTM2 Silent p.F209F 0.20 TCGA-EE-A29G-06 1 111061064 111061064 C T KCNA10 Missense_Mutation p.E116K 0.27 tolerated(0.79) benign(0.003) TCGA-EE-A29G-06 1 112999051 112999051 C T CTTNBP2NL Nonsense_Mutation p.Q313* 0.11 TCGA-EE-A29G-06 1 11316216 11316216 G A MTOR Missense_Mutation p.P180S 0.14 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A29G-06 1 113232048 113232048 T C MOV10 Missense_Mutation p.L118P 0.15 deleterious(0) benign(0.192) TCGA-EE-A29G-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.18 deleterious(0.01) benign(0.045) TCGA-EE-A29G-06 1 12144568 12144568 T G TNFRSF8 Nonsense_Mutation p.Y37* 0.18 TCGA-EE-A29G-06 1 13036403 13036403 G A PRAMEF22 Missense_Mutation p.E159K 0.09 tolerated(0.35) benign(0.046) TCGA-EE-A29G-06 1 150811929 150811929 G A ARNT Silent p.F158F 0.08 TCGA-EE-A29G-06 1 152058027 152058027 C T TCHHL1 Missense_Mutation p.G711R 0.14 tolerated(0.08) benign(0.049) TCGA-EE-A29G-06 1 152882714 152882714 G A IVL Missense_Mutation p.M147I 0.13 tolerated_low_confidence(0.27) unknown(0) TCGA-EE-A29G-06 1 152975541 152975541 G A SPRR3 Silent p.Q15Q 0.12 TCGA-EE-A29G-06 1 154471638 154471638 C T SHE Missense_Mutation p.G223E 0.16 tolerated(0.07) possibly_damaging(0.45) TCGA-EE-A29G-06 1 158151902 158151902 C T CD1D Nonsense_Mutation p.Q137* 0.11 TCGA-EE-A29G-06 1 160394048 160394048 G A VANGL2 Missense_Mutation p.C427Y 0.08 deleterious(0) probably_damaging(0.993) TCGA-EE-A29G-06 1 161518385 161518385 C T FCGR3A Missense_Mutation p.G85R 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 1 178802587 178802587 T C RALGPS2 Missense_Mutation p.F170S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 1 181726163 181726163 C T CACNA1E Silent p.F1410F 0.20 TCGA-EE-A29G-06 1 182873317 182873317 G A SHCBP1L Nonsense_Mutation p.Q529* 0.16 TCGA-EE-A29G-06 1 183195866 183195866 C T LAMC2 Missense_Mutation p.S367L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 1 185143999 185143999 C T SWT1 Silent p.S240S 0.15 TCGA-EE-A29G-06 1 18702887 18702887 C T IGSF21 Nonsense_Mutation p.Q367* 0.11 TCGA-EE-A29G-06 1 19518857 19518857 G A UBR4 Nonsense_Mutation p.Q407* 0.18 TCGA-EE-A29G-06 1 196952077 196952077 C T CFHR5 Missense_Mutation p.P41S 0.10 tolerated(0.14) benign(0.341) TCGA-EE-A29G-06 1 200978520 200978520 C T KIF21B Silent p.K46K 0.13 TCGA-EE-A29G-06 1 201046104 201046104 C T CACNA1S Missense_Mutation p.E591K 0.15 tolerated(0.17) benign(0.049) TCGA-EE-A29G-06 1 210796966 210796966 G C HHAT Missense_Mutation p.G449R 0.05 deleterious(0) probably_damaging(0.993) TCGA-EE-A29G-06 1 211192452 211192452 G A KCNH1 Silent p.V235V 0.13 TCGA-EE-A29G-06 1 234586267 234586267 G A TARBP1 Missense_Mutation p.P590S 0.20 tolerated(0.91) benign(0) TCGA-EE-A29G-06 1 237660020 237660020 C T RYR2 Missense_Mutation p.S724F 0.12 probably_damaging(0.999) TCGA-EE-A29G-06 1 237796904 237796904 C T RYR2 Silent p.A2194A 0.13 TCGA-EE-A29G-06 1 2418770 2418770 G A PLCH2 Missense_Mutation p.D330N 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A29G-06 1 243364124 243364124 G A CEP170 Silent p.F96F 0.22 TCGA-EE-A29G-06 1 247769216 247769216 C T OR2G3 Missense_Mutation p.T110I 0.18 deleterious(0.04) possibly_damaging(0.873) TCGA-EE-A29G-06 1 248756553 248756553 C T OR2T10 Missense_Mutation p.E173K 0.20 tolerated(0.28) benign(0.084) TCGA-EE-A29G-06 1 26694131 26694131 G A ZNF683 Missense_Mutation p.P91L 0.13 tolerated(0.35) benign(0.022) TCGA-EE-A29G-06 1 27876232 27876232 G T AHDC1 Silent p.R799R 0.18 TCGA-EE-A29G-06 1 29475057 29475057 C A SRSF4 Silent p.S450S 0.14 TCGA-EE-A29G-06 1 34033312 34033312 T C CSMD2 Missense_Mutation p.N2731S 0.15 tolerated(0.2) benign(0.062) TCGA-EE-A29G-06 1 42921690 42921690 C T ZMYND12 5'UTR 0.29 TCGA-EE-A29G-06 1 50572066 50572066 G A ELAVL4 Splice_Site p.X20_splice 0.26 TCGA-EE-A29G-06 1 52821912 52821912 T C CC2D1B Missense_Mutation p.Q673R 0.18 tolerated(0.74) benign(0.02) TCGA-EE-A29G-06 1 57535063 57535063 A T DAB1 Silent p.R211R 0.19 TCGA-EE-A29G-06 1 60359151 60359151 C T CYP2J2 3'UTR 0.14 TCGA-EE-A29G-06 1 62740733 62740733 C T KANK4 Missense_Mutation p.E15K 0.16 tolerated(0.11) possibly_damaging(0.684) TCGA-EE-A29G-06 1 66101934 66101934 C T LEPR Missense_Mutation p.L912F 0.16 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A29G-06 1 66827409 66827409 C T PDE4B Missense_Mutation p.S318L 0.19 deleterious(0.03) possibly_damaging(0.616) TCGA-EE-A29G-06 1 76282128 76282128 C T MSH4 Missense_Mutation p.P296S 0.10 tolerated(0.08) benign(0.206) TCGA-EE-A29G-06 1 78191366 78191366 G A USP33 Missense_Mutation p.S437L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29G-06 1 8422900 8422900 G C RERE Missense_Mutation p.S582W 0.21 probably_damaging(0.999) TCGA-EE-A29G-06 1 95001606 95001606 G A F3 Silent p.S109S 0.16 TCGA-EE-A29G-06 1 95303320 95303320 C T SLC44A3 Missense_Mutation p.S188F 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29G-06 1 95699828 95699828 G A RWDD3 Silent p.A14A 0.33 TCGA-EE-A29G-06 1 98039396 98039396 T A DPYD Missense_Mutation p.N420I 0.12 tolerated(0.52) benign(0) TCGA-EE-A29G-06 20 18794566 18794566 C T SCP2D1 Missense_Mutation p.P36L 0.16 deleterious(0.05) benign(0.003) TCGA-EE-A29G-06 20 20144804 20144804 C T C20orf26 Silent p.P379P 0.10 TCGA-EE-A29G-06 20 2552825 2552825 G A TMC2 Silent p.R185R 0.14 TCGA-EE-A29G-06 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.11 deleterious(0) probably_damaging(0.991) TCGA-EE-A29G-06 20 29977019 29977019 C T DEFB119 Missense_Mutation p.D26N 0.12 tolerated(0.78) benign(0.008) TCGA-EE-A29G-06 20 34242834 34242834 G A RBM12 Silent p.T137T 0.15 TCGA-EE-A29G-06 20 36784484 36784484 G A TGM2 Silent p.A66A 0.15 TCGA-EE-A29G-06 20 37580865 37580865 T C FAM83D Missense_Mutation p.V517A 0.15 tolerated(0.22) benign(0.384) TCGA-EE-A29G-06 20 4766926 4766926 G A RASSF2 Nonsense_Mutation p.Q288* 0.11 TCGA-EE-A29G-06 20 5283226 5283226 C T PROKR2 Silent p.K205K 0.13 TCGA-EE-A29G-06 20 56140627 56140627 G A PCK1 Missense_Mutation p.G546R 0.10 deleterious(0.03) benign(0.117) TCGA-EE-A29G-06 21 30255315 30255315 A G N6AMT1 Silent p.A71A 0.12 TCGA-EE-A29G-06 21 35757832 35757832 C T SMIM11 Silent p.L23L 0.21 TCGA-EE-A29G-06 21 41414516 41414516 A G DSCAM Missense_Mutation p.M1823T 0.11 deleterious(0) possibly_damaging(0.549) TCGA-EE-A29G-06 21 41711182 41711182 C T DSCAM Silent p.Q457Q 0.24 TCGA-EE-A29G-06 21 41741076 41741076 C T DSCAM Missense_Mutation p.R202Q 0.15 tolerated(0.12) benign(0.056) TCGA-EE-A29G-06 22 26422411 26422411 G C MYO18B Missense_Mutation p.R2157S 0.16 tolerated(0.08) benign(0.209) TCGA-EE-A29G-06 22 26422903 26422903 G A MYO18B Silent p.L2321L 0.23 TCGA-EE-A29G-06 22 26688708 26688708 G A SEZ6L Missense_Mutation p.R144K 0.12 tolerated_low_confidence(0.14) benign(0.006) TCGA-EE-A29G-06 22 36960604 36960604 C T CACNG2 Missense_Mutation p.G256S 0.21 tolerated(0.18) probably_damaging(0.991) TCGA-EE-A29G-06 22 38890739 38890739 G A DDX17 Silent p.F370F 0.13 TCGA-EE-A29G-06 22 38948707 38948707 G A DMC1 Missense_Mutation p.R129C 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A29G-06 22 39883496 39883496 C T MGAT3 Silent p.S48S 0.15 TCGA-EE-A29G-06 22 40075294 40075294 G A CACNA1I Missense_Mutation p.M1746I 0.50 deleterious(0.01) benign(0.019) TCGA-EE-A29G-06 22 45719160 45719160 C G FAM118A Missense_Mutation p.S51W 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 22 47073159 47073159 C T GRAMD4 3'UTR 0.17 TCGA-EE-A29G-06 2 101620773 101620773 G T RPL31 Intron 0.18 TCGA-EE-A29G-06 2 108488418 108488418 G A RGPD4 Missense_Mutation p.E1320K 0.18 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A29G-06 2 112582574 112582574 A C ANAPC1 Silent p.A927A 0.08 TCGA-EE-A29G-06 2 112608458 112608458 T G ANAPC1 Silent p.P515P 0.13 TCGA-EE-A29G-06 2 113820103 113820103 G A IL36RN Missense_Mutation p.G106E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 2 113885205 113885205 G A IL1RN Intron 0.22 TCGA-EE-A29G-06 2 137814319 137814319 G A THSD7B Missense_Mutation p.E157K 0.08 tolerated(0.52) benign(0.316) TCGA-EE-A29G-06 2 141272283 141272283 A G LRP1B Silent p.H2736H 0.10 TCGA-EE-A29G-06 2 169780299 169780299 C T ABCB11 Missense_Mutation p.G1267S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 2 169995190 169995190 T C LRP2 Missense_Mutation p.E4472G 0.13 possibly_damaging(0.821) TCGA-EE-A29G-06 2 170062962 170062962 G A LRP2 Missense_Mutation p.S2423F 0.25 benign(0.212) TCGA-EE-A29G-06 2 178416698 178416698 C T TTC30B Missense_Mutation p.R265K 0.10 tolerated(1) benign(0) TCGA-EE-A29G-06 2 179428070 179428070 C T TTN Missense_Mutation p.D27597N 0.13 TCGA-EE-A29G-06 2 179440104 179440104 C T TTN Silent p.V23585V 0.10 TCGA-EE-A29G-06 2 179477040 179477040 C T TTN Missense_Mutation p.E16738K 0.14 TCGA-EE-A29G-06 2 179477551 179477551 C T TTN Missense_Mutation p.E16633K 0.17 TCGA-EE-A29G-06 2 179560875 179560875 C T TTN Silent p.K10308K 0.33 TCGA-EE-A29G-06 2 179584291 179584291 G A TTN Silent p.V7976V 0.20 TCGA-EE-A29G-06 2 179597057 179597057 C T TTN Missense_Mutation p.E5547K 0.17 TCGA-EE-A29G-06 2 189927767 189927767 T G COL5A2 Missense_Mutation p.E631A 0.06 possibly_damaging(0.612) TCGA-EE-A29G-06 2 202466597 202466597 T C ALS2CR11 Silent p.Q127Q 0.10 TCGA-EE-A29G-06 2 208632349 208632349 G A FZD5 Missense_Mutation p.S372F 0.40 deleterious(0) probably_damaging(0.992) TCGA-EE-A29G-06 2 21230873 21230873 G A APOB Missense_Mutation p.S2956F 0.18 benign(0.018) TCGA-EE-A29G-06 2 215839571 215839571 G A ABCA12 Missense_Mutation p.T1800M 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 2 218999505 218999505 G A CXCR2 5'UTR 0.14 TCGA-EE-A29G-06 2 220146740 220146740 C T DNAJB2 Silent p.F103F 0.22 TCGA-EE-A29G-06 2 232458344 232458344 G A C2orf57 Missense_Mutation p.G228R 0.19 tolerated(0.69) probably_damaging(0.991) TCGA-EE-A29G-06 2 234746211 234746211 G A HJURP 3'UTR 0.16 TCGA-EE-A29G-06 2 240969565 240969565 G A OR6B2 Silent p.F94F 0.12 TCGA-EE-A29G-06 2 240981461 240981461 G A PRR21 Silent p.S313S 0.14 TCGA-EE-A29G-06 2 26507820 26507820 A G HADHB Missense_Mutation p.T407A 0.09 tolerated(0.85) benign(0.003) TCGA-EE-A29G-06 2 27457439 27457439 C T CAD Silent p.P1224P 0.18 TCGA-EE-A29G-06 2 29436869 29436869 C T ALK Missense_Mutation p.E1242K 0.12 deleterious(0) probably_damaging(0.986) TCGA-EE-A29G-06 2 31135139 31135139 G A GALNT14 Missense_Mutation p.P489S 0.20 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A29G-06 2 56097910 56097910 G A EFEMP1 Missense_Mutation p.T422I 0.14 deleterious(0) benign(0.33) TCGA-EE-A29G-06 2 61019409 61019409 T A PAPOLG Missense_Mutation p.V555E 0.18 tolerated(0.36) benign(0) TCGA-EE-A29G-06 2 71576199 71576199 C T ZNF638 Missense_Mutation p.L39F 0.10 tolerated(0.05) possibly_damaging(0.901) TCGA-EE-A29G-06 2 71909735 71909735 G A DYSF Silent p.R2083R 0.23 TCGA-EE-A29G-06 2 74650042 74650042 T C WDR54 Missense_Mutation p.S90P 0.09 deleterious(0) probably_damaging(0.987) TCGA-EE-A29G-06 2 95815412 95815412 G A ZNF514 Missense_Mutation p.S273L 0.19 deleterious(0.02) benign(0.425) TCGA-EE-A29G-06 3 101572239 101572239 C T NFKBIZ Missense_Mutation p.S290F 0.10 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-EE-A29G-06 3 102175049 102175049 C T ZPLD1 Missense_Mutation p.P130S 0.10 tolerated(0.4) benign(0.287) TCGA-EE-A29G-06 3 108072453 108072453 G A HHLA2 Missense_Mutation p.E82K 0.10 tolerated(0.13) benign(0.155) TCGA-EE-A29G-06 3 108158647 108158647 C T MYH15 Missense_Mutation p.M1024I 0.08 tolerated(0.08) benign(0) TCGA-EE-A29G-06 3 111842515 111842515 C T GCSAM Silent p.E110E 0.18 TCGA-EE-A29G-06 3 112987254 112987254 G A BOC Missense_Mutation p.R162Q 0.20 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A29G-06 3 121976000 121976000 C T CASR Silent p.A86A 0.11 TCGA-EE-A29G-06 3 129130159 129130159 G A EFCAB12 Missense_Mutation p.P293S 0.13 tolerated(0.57) benign(0.011) TCGA-EE-A29G-06 3 129195284 129195284 G A IFT122 Missense_Mutation p.G366R 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A29G-06 3 130381032 130381032 G A COL6A6 Missense_Mutation p.E2128K 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29G-06 3 134670597 134670597 C T EPHB1 Missense_Mutation p.R170W 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A29G-06 3 136323168 136323168 C T STAG1 Missense_Mutation p.G94R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 3 142231206 142231206 G A ATR Missense_Mutation p.S1583F 0.14 deleterious(0) possibly_damaging(0.533) TCGA-EE-A29G-06 3 14561972 14561972 G A GRIP2 RNA 0.26 TCGA-EE-A29G-06 3 186358421 186358421 G A FETUB Missense_Mutation p.D58N 0.08 deleterious(0) probably_damaging(0.948) TCGA-EE-A29G-06 3 30842485 30842485 G A GADL1 Silent p.I382I 0.21 TCGA-EE-A29G-06 3 32398964 32398964 C T CMTM8 Missense_Mutation p.L83F 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 3 38620983 38620983 C T SCN5A Missense_Mutation p.E1078K 0.18 tolerated(0.45) benign(0.087) TCGA-EE-A29G-06 3 38629053 38629053 C T SCN5A Silent p.G758G 0.25 TCGA-EE-A29G-06 3 38645372 38645372 C T SCN5A Missense_Mutation p.G574E 0.23 tolerated(0.32) benign(0.182) TCGA-EE-A29G-06 3 38798333 38798333 C T SCN10A Missense_Mutation p.M374I 0.08 tolerated(0.07) benign(0.123) TCGA-EE-A29G-06 3 45800494 45800494 C T SLC6A20 Silent p.R585R 0.13 TCGA-EE-A29G-06 3 47129691 47129691 G A SETD2 Missense_Mutation p.S1730F 0.10 deleterious(0) benign(0.009) TCGA-EE-A29G-06 3 48616931 48616931 C T COL7A1 Silent p.R1751R 0.18 TCGA-EE-A29G-06 3 49699811 49699811 G A BSN Silent p.L3511L 0.30 TCGA-EE-A29G-06 3 49753850 49753850 C T RNF123 Missense_Mutation p.P1147L 0.11 deleterious(0) probably_damaging(0.99) TCGA-EE-A29G-06 3 50683192 50683192 C T MAPKAPK3 Missense_Mutation p.S227F 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 3 51669622 51669622 C T RAD54L2 Missense_Mutation p.R386C 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A29G-06 3 51864696 51864696 C T IQCF3 Missense_Mutation p.A115V 0.09 deleterious(0.04) benign(0.005) TCGA-EE-A29G-06 3 52395271 52395271 G A DNAH1 Missense_Mutation p.D1593N 0.12 probably_damaging(0.996) TCGA-EE-A29G-06 3 52485442 52485442 C T TNNC1 Missense_Mutation p.G140E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 3 53844263 53844263 C T CACNA1D Missense_Mutation p.P2064S 0.11 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A29G-06 3 54952717 54952717 C G LRTM1 Missense_Mutation p.L269F 0.12 tolerated(0.71) benign(0.044) TCGA-EE-A29G-06 3 57616707 57616707 T C DENND6A Splice_Site p.X452_splice 0.09 TCGA-EE-A29G-06 3 65367727 65367727 G A MAGI1 Silent p.I842I 0.12 TCGA-EE-A29G-06 3 7721864 7721864 G A GRM7 Silent p.K860K 0.19 TCGA-EE-A29G-06 3 9483415 9483415 T C SETD5 Missense_Mutation p.F317L 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A29G-06 3 9970149 9970149 C T IL17RC Silent p.S417S 0.10 TCGA-EE-A29G-06 4 100334248 100334248 C T ADH7 3'UTR 0.19 TCGA-EE-A29G-06 4 107845771 107845771 G A DKK2 Missense_Mutation p.H154Y 0.12 deleterious(0.03) benign(0.063) TCGA-EE-A29G-06 4 111397936 111397936 C T ENPEP Silent p.S122S 0.07 TCGA-EE-A29G-06 4 123192355 123192355 C T KIAA1109 Missense_Mutation p.S2559F 0.13 possibly_damaging(0.794) TCGA-EE-A29G-06 4 138451129 138451129 G A PCDH18 Missense_Mutation p.S705F 0.14 deleterious(0) possibly_damaging(0.89) TCGA-EE-A29G-06 4 138453306 138453306 C T PCDH18 5'UTR 0.17 TCGA-EE-A29G-06 4 141543335 141543335 G A TBC1D9 3'UTR 0.10 TCGA-EE-A29G-06 4 145573764 145573764 C T HHIP Missense_Mutation p.S96F 0.39 deleterious(0) probably_damaging(0.934) TCGA-EE-A29G-06 4 155749083 155749083 G A RBM46 Missense_Mutation p.G489E 0.12 tolerated(0.11) benign(0) TCGA-EE-A29G-06 4 162697113 162697113 G A FSTL5 Missense_Mutation p.R175W 0.20 deleterious(0.03) benign(0) TCGA-EE-A29G-06 4 166021901 166021901 G A TMEM192 Silent p.L106L 0.14 TCGA-EE-A29G-06 4 175896574 175896574 G A ADAM29 5'UTR 0.27 TCGA-EE-A29G-06 4 46066470 46066470 C T GABRG1 Missense_Mutation p.E205K 0.23 tolerated(1) probably_damaging(0.949) TCGA-EE-A29G-06 4 47556760 47556760 A G ATP10D Silent p.P551P 0.23 TCGA-EE-A29G-06 4 69536262 69536262 C T UGT2B15 Silent p.K25K 0.24 TCGA-EE-A29G-06 4 70156400 70156400 C T UGT2B28 Missense_Mutation p.P394L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 4 85676507 85676507 G A WDFY3 Missense_Mutation p.S1824F 0.28 deleterious(0) benign(0.444) TCGA-EE-A29G-06 4 85731442 85731442 A G WDFY3 Missense_Mutation p.V648A 0.23 deleterious(0.04) benign(0.171) TCGA-EE-A29G-06 4 87679897 87679897 C T PTPN13 Missense_Mutation p.A1127V 0.22 tolerated(0.28) benign(0.002) TCGA-EE-A29G-06 4 88532046 88532046 T A DSPP 5'UTR 0.27 TCGA-EE-A29G-06 4 88534086 88534086 G A DSPP Missense_Mutation p.G250R 0.16 probably_damaging(1) TCGA-EE-A29G-06 4 88902665 88902665 G A SPP1 Missense_Mutation p.M85I 0.33 tolerated(0.37) benign(0.284) TCGA-EE-A29G-06 4 96045035 96045035 A C BMPR1B Missense_Mutation p.I172L 0.14 tolerated(0.75) benign(0.039) TCGA-EE-A29G-06 5 110835597 110835597 C T STARD4 Missense_Mutation p.R202Q 0.17 tolerated(1) benign(0.014) TCGA-EE-A29G-06 5 112179658 112179658 C T APC Silent p.S2789S 0.14 TCGA-EE-A29G-06 5 120022423 120022423 T A PRR16 3'UTR 0.12 TCGA-EE-A29G-06 5 122365059 122365059 G A PPIC Missense_Mutation p.L58F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 5 13824441 13824441 A G DNAH5 Missense_Mutation p.V2149A 0.13 benign(0.418) TCGA-EE-A29G-06 5 13859660 13859660 G A DNAH5 Silent p.N1617N 0.20 TCGA-EE-A29G-06 5 139216477 139216477 C T PSD2 Silent p.I495I 0.13 TCGA-EE-A29G-06 5 140605268 140605268 C T PCDHB14 Missense_Mutation p.P731S 0.16 tolerated_low_confidence(0.16) benign(0.159) TCGA-EE-A29G-06 5 145393464 145393464 C T SH3RF2 Missense_Mutation p.S300F 0.14 deleterious(0) probably_damaging(0.933) TCGA-EE-A29G-06 5 151784537 151784537 G A NMUR2 Silent p.L46L 0.11 TCGA-EE-A29G-06 5 153029900 153029900 C T GRIA1 Silent p.V167V 0.19 TCGA-EE-A29G-06 5 156736808 156736808 A T CYFIP2 Nonsense_Mutation p.K294* 0.12 TCGA-EE-A29G-06 5 156788477 156788477 G A CYFIP2 Silent p.G944G 0.14 TCGA-EE-A29G-06 5 167645775 167645775 G A TENM2 Missense_Mutation p.E1627K 0.11 tolerated(0.48) benign(0.09) TCGA-EE-A29G-06 5 169677818 169677818 G C LCP2 Nonsense_Mutation p.Y465* 0.12 TCGA-EE-A29G-06 5 176524534 176524534 G A FGFR4 Missense_Mutation p.D756N 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-EE-A29G-06 5 179249887 179249887 A G SQSTM1 Intron 0.22 TCGA-EE-A29G-06 5 179315251 179315251 G A TBC1D9B Missense_Mutation p.T369I 0.10 tolerated(0.46) possibly_damaging(0.493) TCGA-EE-A29G-06 5 180582469 180582469 A G OR2V2 Missense_Mutation p.N176S 0.14 deleterious(0.04) benign(0.217) TCGA-EE-A29G-06 5 205919 205919 G A CCDC127 Silent p.L92L 0.34 TCGA-EE-A29G-06 5 24535336 24535336 G A CDH10 Silent p.Y233Y 0.14 TCGA-EE-A29G-06 5 32789519 32789519 C T AC026703.1 Silent p.S4S 0.14 TCGA-EE-A29G-06 5 39285309 39285309 C T C9 Missense_Mutation p.E558K 0.22 deleterious_low_confidence(0) benign(0) TCGA-EE-A29G-06 5 39383359 39383359 G A DAB2 Silent p.I234I 0.17 TCGA-EE-A29G-06 5 40958291 40958291 T C C7 Missense_Mutation p.C473R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 5 57751416 57751416 G A PLK2 Silent p.V525V 0.18 TCGA-EE-A29G-06 5 66084622 66084622 G A MAST4 Silent p.L214L 0.23 TCGA-EE-A29G-06 5 75871584 75871584 C T IQGAP2 Missense_Mutation p.H150Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 5 76254779 76254779 C T CRHBP Intron 0.11 TCGA-EE-A29G-06 5 79031243 79031243 C T CMYA5 Missense_Mutation p.P2219S 0.17 benign(0.001) TCGA-EE-A29G-06 5 79374023 79374023 C T THBS4 Silent p.I746I 0.24 TCGA-EE-A29G-06 5 79854512 79854512 G A ANKRD34B Nonsense_Mutation p.Q443* 0.07 TCGA-EE-A29G-06 5 82948485 82948485 C T HAPLN1 Missense_Mutation p.D87N 0.14 tolerated(0.37) benign(0.147) TCGA-EE-A29G-06 5 96065383 96065383 C T CAST Missense_Mutation p.S127F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 5 96251465 96251465 T C ERAP2 Silent p.L911L 0.09 TCGA-EE-A29G-06 6 127765361 127765361 G A KIAA0408 Missense_Mutation p.R660C 0.37 deleterious(0.02) benign(0.191) TCGA-EE-A29G-06 6 136704811 136704811 C T MAP7 Missense_Mutation p.R234K 0.20 deleterious(0.04) possibly_damaging(0.748) TCGA-EE-A29G-06 6 148854931 148854931 A G SASH1 Missense_Mutation p.S587G 0.21 deleterious(0) probably_damaging(0.945) TCGA-EE-A29G-06 6 151894598 151894598 T C CCDC170 Missense_Mutation p.M355T 0.14 deleterious(0) benign(0.36) TCGA-EE-A29G-06 6 155450802 155450802 T A TIAM2 Missense_Mutation p.S149T 0.27 tolerated_low_confidence(0.31) benign(0.05) TCGA-EE-A29G-06 6 155450804 155450804 C T TIAM2 Silent p.S149S 0.28 TCGA-EE-A29G-06 6 158502225 158502225 C T SYNJ2 Silent p.F884F 0.13 TCGA-EE-A29G-06 6 26234911 26234911 C T HIST1H1D Missense_Mutation p.G84D 0.10 deleterious(0) probably_damaging(0.965) TCGA-EE-A29G-06 6 29012641 29012641 G C OR2W1 Nonsense_Mutation p.Y104* 0.20 TCGA-EE-A29G-06 6 31603424 31603424 C T PRRC2A Silent p.S1813S 0.27 TCGA-EE-A29G-06 6 36823601 36823601 G A PPIL1 Silent p.Y163Y 0.21 TCGA-EE-A29G-06 6 38942249 38942249 T C DNAH8 Silent p.L4043L 0.30 TCGA-EE-A29G-06 6 94066482 94066482 C T EPHA7 Missense_Mutation p.R426Q 0.20 tolerated(0.17) possibly_damaging(0.53) TCGA-EE-A29G-06 6 97058559 97058559 G A FHL5 Missense_Mutation p.D206N 0.20 tolerated(0.11) possibly_damaging(0.754) TCGA-EE-A29G-06 7 100345200 100345200 C T ZAN Missense_Mutation p.S320L 0.12 probably_damaging(0.992) TCGA-EE-A29G-06 7 100677796 100677796 A T MUC17 Silent p.P1033P 0.07 TCGA-EE-A29G-06 7 102956276 102956276 T A DNAJC2 Missense_Mutation p.K524M 0.15 deleterious(0) probably_damaging(0.993) TCGA-EE-A29G-06 7 104753811 104753811 T C KMT2E 3'UTR 0.31 TCGA-EE-A29G-06 7 135047869 135047869 G A CNOT4 Missense_Mutation p.S637F 0.13 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A29G-06 7 136700038 136700038 G A CHRM2 Missense_Mutation p.M142I 0.22 tolerated(0.92) benign(0.01) TCGA-EE-A29G-06 7 136700128 136700128 G A CHRM2 Silent p.E172E 0.10 TCGA-EE-A29G-06 7 138853127 138853127 G A TTC26 Missense_Mutation p.G330D 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A29G-06 7 13971334 13971334 G A ETV1 Missense_Mutation p.P199S 0.19 tolerated(0.5) benign(0.034) TCGA-EE-A29G-06 7 141952342 141952342 C T PRSS58 Missense_Mutation p.E176K 0.14 tolerated(0.3) benign(0.062) TCGA-EE-A29G-06 7 142162325 142162325 G A TRBV6-6 Silent p.L13L 0.12 TCGA-EE-A29G-06 7 142168486 142168486 G A TRBV5-4 Silent p.F79F 0.11 TCGA-EE-A29G-06 7 143175582 143175582 C T TAS2R41 Missense_Mutation p.S206F 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A29G-06 7 150217187 150217187 C T GIMAP7 Missense_Mutation p.A42V 0.30 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A29G-06 7 150417175 150417175 G A GIMAP1 Missense_Mutation p.R28Q 0.07 deleterious(0) benign(0.324) TCGA-EE-A29G-06 7 24331381 24331381 C T NPY 3'UTR 0.29 TCGA-EE-A29G-06 7 24888786 24888786 G T OSBPL3 Missense_Mutation p.Q390K 0.10 tolerated(0.11) possibly_damaging(0.571) TCGA-EE-A29G-06 7 27150282 27150282 C T HOXA3 5'UTR 0.14 TCGA-EE-A29G-06 7 44192912 44192912 G A GCK Missense_Mutation p.P67S 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29G-06 7 44836316 44836316 T C PPIA 5'UTR 0.07 TCGA-EE-A29G-06 7 45145221 45145221 G A TBRG4 Missense_Mutation p.A185V 0.24 tolerated(0.28) benign(0.02) TCGA-EE-A29G-06 7 71488740 71488740 C T CALN1 Missense_Mutation p.D135N 0.15 deleterious(0.01) benign(0.012) TCGA-EE-A29G-06 7 86468913 86468913 C T GRM3 Silent p.L695L 0.11 TCGA-EE-A29G-06 7 94041986 94041986 G A COL1A2 Missense_Mutation p.G499S 0.17 unknown(0) TCGA-EE-A29G-06 7 99691254 99691254 C T MCM7 Intron 0.16 TCGA-EE-A29G-06 8 104337156 104337156 C T FZD6 Silent p.V274V 0.21 TCGA-EE-A29G-06 8 106811101 106811101 C T ZFPM2 Silent p.L297L 0.13 TCGA-EE-A29G-06 8 110503254 110503254 C T PKHD1L1 Silent p.F3346F 0.10 TCGA-EE-A29G-06 8 124206364 124206364 G A FAM83A Missense_Mutation p.R250K 0.12 tolerated(0.12) benign(0.034) TCGA-EE-A29G-06 8 131826335 131826335 C T ADCY8 Missense_Mutation p.E965K 0.19 deleterious(0.02) probably_damaging(0.91) TCGA-EE-A29G-06 8 133899499 133899499 G A TG Missense_Mutation p.D628N 0.11 tolerated(0.06) benign(0.032) TCGA-EE-A29G-06 8 139163549 139163549 A T FAM135B Missense_Mutation p.F1057I 0.14 tolerated(0.13) benign(0.04) TCGA-EE-A29G-06 8 144941668 144941668 C T EPPK1 Silent p.R1918R 0.14 TCGA-EE-A29G-06 8 145695006 145695006 C T KIFC2 Silent p.F452F 0.14 TCGA-EE-A29G-06 8 145695007 145695007 C T KIFC2 Missense_Mutation p.P453S 0.14 tolerated(0.33) benign(0.038) TCGA-EE-A29G-06 8 1581075 1581075 C T DLGAP2 Missense_Mutation p.A478V 0.15 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A29G-06 8 17447069 17447069 C T PDGFRL Missense_Mutation p.P50S 0.14 deleterious(0.05) benign(0.043) TCGA-EE-A29G-06 8 27762290 27762290 C T SCARA5 Intron 0.25 TCGA-EE-A29G-06 8 32614018 32614018 C A NRG1 Missense_Mutation p.P306T 0.09 deleterious(0.03) possibly_damaging(0.76) TCGA-EE-A29G-06 8 38273548 38273548 G A FGFR1 Missense_Mutation p.S596F 0.17 deleterious(0) probably_damaging(0.966) TCGA-EE-A29G-06 8 39626988 39626988 G A ADAM2 Missense_Mutation p.P379S 0.18 tolerated(0.12) benign(0.064) TCGA-EE-A29G-06 8 39627032 39627032 G A ADAM2 Missense_Mutation p.S364L 0.20 tolerated(0.09) possibly_damaging(0.461) TCGA-EE-A29G-06 8 53062383 53062383 G A ST18 Missense_Mutation p.A654V 0.10 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A29G-06 8 57214052 57214052 T G SDR16C5 Missense_Mutation p.K306T 0.07 tolerated(0.23) benign(0.118) TCGA-EE-A29G-06 8 68396082 68396082 C T CPA6 Nonsense_Mutation p.W253* 0.07 TCGA-EE-A29G-06 8 69020443 69020443 C T PREX2 Missense_Mutation p.H939Y 0.08 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A29G-06 8 69058575 69058575 C T PREX2 Missense_Mutation p.L1407F 0.12 deleterious(0) probably_damaging(0.994) TCGA-EE-A29G-06 8 69434034 69434034 G A C8orf34 Missense_Mutation p.E256K 0.10 deleterious(0.04) possibly_damaging(0.82) TCGA-EE-A29G-06 8 71036964 71036964 G A NCOA2 Silent p.S1351S 0.16 TCGA-EE-A29G-06 8 77616956 77616956 C T ZFHX4 Silent p.F211F 0.17 TCGA-EE-A29G-06 8 77765647 77765647 G A ZFHX4 Missense_Mutation p.E2164K 0.19 possibly_damaging(0.693) TCGA-EE-A29G-06 8 8185853 8185853 G A SGK223 Silent p.L813L 0.15 TCGA-EE-A29G-06 8 81897606 81897606 G A PAG1 Missense_Mutation p.S94L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29G-06 8 87666270 87666270 C T CNGB3 Silent p.R291R 0.12 TCGA-EE-A29G-06 8 92999120 92999120 C T RUNX1T1 Missense_Mutation p.D369N 0.12 tolerated(0.86) benign(0.001) TCGA-EE-A29G-06 8 95504939 95504939 G C KIAA1429 Silent p.T1583T 0.07 TCGA-EE-A29G-06 8 99153020 99153020 C T POP1 Missense_Mutation p.P500S 0.12 tolerated(0.06) possibly_damaging(0.764) TCGA-EE-A29G-06 9 107331487 107331487 C T OR13C8 Silent p.F13F 0.13 TCGA-EE-A29G-06 9 107331700 107331700 C T OR13C8 Silent p.S84S 0.09 TCGA-EE-A29G-06 9 113449458 113449458 G A MUSK Missense_Mutation p.E90K 0.12 tolerated_low_confidence(0.27) probably_damaging(0.984) TCGA-EE-A29G-06 9 126132513 126132513 C T CRB2 Missense_Mutation p.S394F 0.17 deleterious(0) possibly_damaging(0.485) TCGA-EE-A29G-06 9 35809987 35809987 G A SPAG8 Intron 0.10 TCGA-EE-A29G-06 9 39171462 39171462 G A CNTNAP3 Nonsense_Mutation p.R413* 0.15 TCGA-EE-A29G-06 9 73255515 73255515 G A TRPM3 Silent p.I469I 0.12 TCGA-EE-A29G-06 9 84532427 84532427 G A SPATA31D5P RNA 0.09 TCGA-EE-A29G-06 9 96437255 96437255 C T PHF2 Silent p.S891S 0.16 TCGA-EE-A29G-06 9 99522716 99522716 G A ZNF510 Silent p.I132I 0.15 TCGA-EE-A29G-06 X 10085262 10085262 C T WWC3 Missense_Mutation p.S388L 0.44 deleterious(0.02) possibly_damaging(0.891) TCGA-EE-A29G-06 X 102337067 102337067 G A NXF3 Intron 0.31 TCGA-EE-A29G-06 X 103268042 103268042 C T H2BFWT Missense_Mutation p.R64Q 0.28 tolerated(0.54) benign(0.005) TCGA-EE-A29G-06 X 105450602 105450602 G A MUM1L1 Missense_Mutation p.G393R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29G-06 X 107417830 107417830 C T COL4A6 Missense_Mutation p.R994Q 0.29 benign(0.19) TCGA-EE-A29G-06 X 11316686 11316686 G A AMELX Missense_Mutation p.E69K 0.09 deleterious(0) probably_damaging(0.981) TCGA-EE-A29G-06 X 115574866 115574866 G A SLC6A14 Missense_Mutation p.M188I 0.47 tolerated(0.57) benign(0.01) TCGA-EE-A29G-06 X 115586625 115586625 T A SLC6A14 Missense_Mutation p.L536H 0.37 deleterious(0) probably_damaging(0.969) TCGA-EE-A29G-06 X 117960056 117960056 G A ZCCHC12 Silent p.Q283Q 0.36 TCGA-EE-A29G-06 X 135430025 135430025 C T GPR112 Missense_Mutation p.P1387L 0.39 deleterious(0.03) benign(0) TCGA-EE-A29G-06 X 141290791 141290791 G A MAGEC2 Missense_Mutation p.S328F 0.37 deleterious(0) benign(0.189) TCGA-EE-A29G-06 X 142596636 142596636 A C SPANXN3 3'UTR 0.21 TCGA-EE-A29G-06 X 148038127 148038127 G A AFF2 Missense_Mutation p.G851D 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A29G-06 X 152482452 152482452 G A MAGEA1 Nonsense_Mutation p.Q187* 0.31 TCGA-EE-A29G-06 X 153668320 153668320 C T GDI1 Missense_Mutation p.R141C 0.33 deleterious(0) probably_damaging(0.913) TCGA-EE-A29G-06 X 153716343 153716343 G A SLC10A3 Missense_Mutation p.H313Y 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29G-06 X 22095764 22095764 T C PHEX Missense_Mutation p.F203L 0.28 tolerated(1) benign(0.005) TCGA-EE-A29G-06 X 24605402 24605402 G A PCYT1B Missense_Mutation p.S174F 0.32 tolerated(0.19) benign(0.091) TCGA-EE-A29G-06 X 34148754 34148754 G A FAM47A Missense_Mutation p.P548S 0.39 tolerated(0.09) possibly_damaging(0.803) TCGA-EE-A29G-06 X 55103076 55103076 G A PAGE2B Silent p.G53G 0.29 TCGA-EE-A29G-06 X 63410310 63410310 G A AMER1 Missense_Mutation p.P953S 0.50 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A29G-06 X 70148725 70148725 G A SLC7A3 Silent p.F166F 0.32 TCGA-EE-A29G-06 X 73065748 73065748 G A XIST RNA 0.31 TCGA-EE-A29G-06 X 76709678 76709678 G C FGF16 Missense_Mutation p.G11A 0.19 probably_damaging(0.984) TCGA-EE-A29G-06 X 84561251 84561251 C T POF1B Missense_Mutation p.R418K 0.30 tolerated(0.37) benign(0.008) TCGA-EE-A29G-06 X 9864373 9864373 C T SHROOM2 Missense_Mutation p.P809S 0.36 tolerated(0.4) benign(0) TCGA-EE-A29H-06 10 127755336 127755336 G T ADAM12 Missense_Mutation p.L458M 0.71 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 10 27066037 27066037 G A ABI1 Missense_Mutation p.P140L 0.76 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A29H-06 10 55581528 55581528 A T PCDH15 3'UTR 0.75 TCGA-EE-A29H-06 10 62631971 62631971 G A RHOBTB1 Silent p.F631F 0.69 TCGA-EE-A29H-06 10 75104891 75104891 C T TTC18 Missense_Mutation p.E181K 0.65 deleterious(0) probably_damaging(0.991) TCGA-EE-A29H-06 10 94297304 94297304 G A IDE Silent p.F34F 0.73 TCGA-EE-A29H-06 11 113673928 113673928 C T USP28 Silent p.R938R 0.74 TCGA-EE-A29H-06 11 118081352 118081352 C T AMICA1 Missense_Mutation p.G92R 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 11 118081353 118081353 C T AMICA1 Missense_Mutation p.M91I 0.62 tolerated(0.07) benign(0.003) TCGA-EE-A29H-06 11 123901033 123901033 G A OR10G8 Missense_Mutation p.R235K 0.74 tolerated(0.49) benign(0.107) TCGA-EE-A29H-06 11 124971120 124971120 G A TMEM218 Missense_Mutation p.P64S 0.50 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A29H-06 11 126124266 126124266 C T FAM118B Missense_Mutation p.P212S 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 11 16847786 16847786 C T PLEKHA7 Silent p.G408G 0.39 TCGA-EE-A29H-06 11 22391620 22391620 C T SLC17A6 Silent p.S309S 0.28 TCGA-EE-A29H-06 11 2436411 2436411 G A TRPM5 Silent p.F473F 0.28 TCGA-EE-A29H-06 11 26353798 26353798 G A ANO3 5'UTR 0.28 TCGA-EE-A29H-06 11 31669377 31669377 C T ELP4 Missense_Mutation p.P339L 0.37 deleterious(0) probably_damaging(0.968) TCGA-EE-A29H-06 11 31815651 31815651 T C PAX6 Missense_Mutation p.T246A 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A29H-06 11 35236416 35236416 C T CD44 Missense_Mutation p.H610Y 0.36 tolerated(0.67) benign(0) TCGA-EE-A29H-06 11 4388930 4388930 C A OR52B4 Missense_Mutation p.W199L 0.37 tolerated(0.05) possibly_damaging(0.861) TCGA-EE-A29H-06 11 4566873 4566873 C T OR52M1 Silent p.L151L 0.49 TCGA-EE-A29H-06 11 46745042 46745042 G A F2 Missense_Mutation p.R178K 0.44 tolerated(0.33) benign(0.042) TCGA-EE-A29H-06 11 48346890 48346890 G A OR4C3 Missense_Mutation p.G133E 0.13 deleterious(0) probably_damaging(0.978) TCGA-EE-A29H-06 11 4870000 4870000 C T OR51S1 Missense_Mutation p.G147S 0.42 tolerated(1) benign(0.015) TCGA-EE-A29H-06 11 5153120 5153120 G A OR52A5 Silent p.F251F 0.40 TCGA-EE-A29H-06 11 55945014 55945014 G A OR5J2 Missense_Mutation p.M307I 0.47 tolerated(0.28) benign(0.001) TCGA-EE-A29H-06 11 56144011 56144011 C T OR8U1 Silent p.I304I 0.35 TCGA-EE-A29H-06 11 56185691 56185691 G A OR5R1 Silent p.I6I 0.31 TCGA-EE-A29H-06 11 56344610 56344610 C T OR5M10 Silent p.K196K 0.30 TCGA-EE-A29H-06 11 5809841 5809841 G A OR52N1 Missense_Mutation p.S69F 0.33 deleterious(0) probably_damaging(0.966) TCGA-EE-A29H-06 11 58602124 58602124 A G GLYATL2 Silent p.C221C 0.38 TCGA-EE-A29H-06 11 59282923 59282923 G A OR4D9 Missense_Mutation p.D180N 0.39 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A29H-06 11 61105547 61105547 G A DAK Silent p.K46K 0.46 TCGA-EE-A29H-06 11 62558255 62558255 G A TMEM223 Missense_Mutation p.P150L 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A29H-06 11 64821759 64821759 G T NAALADL1 Missense_Mutation p.P319T 0.33 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29H-06 11 67049402 67049402 C T ADRBK1 Silent p.F312F 0.31 TCGA-EE-A29H-06 11 67223176 67223176 C T CABP4 Silent p.R94R 0.30 TCGA-EE-A29H-06 11 6789370 6789370 G A OR2AG2 Silent p.I273I 0.39 TCGA-EE-A29H-06 11 71732260 71732260 G A NUMA1 Silent p.F150F 0.43 TCGA-EE-A29H-06 11 90602358 90602358 C T MIR1261 RNA 0.37 TCGA-EE-A29H-06 11 92087980 92087980 C T FAT3 Missense_Mutation p.S901F 0.40 benign(0.148) TCGA-EE-A29H-06 11 99932090 99932090 G A CNTN5 Missense_Mutation p.G376E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 12 104049247 104049247 G A STAB2 Missense_Mutation p.G541E 0.41 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A29H-06 12 107713769 107713769 T A BTBD11 Missense_Mutation p.L351Q 0.35 deleterious(0.02) possibly_damaging(0.694) TCGA-EE-A29H-06 12 122720359 122720359 G A VPS33A Missense_Mutation p.L472F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 12 130892274 130892274 G A RIMBP2 Silent p.V974V 0.42 TCGA-EE-A29H-06 12 21032478 21032478 C T SLCO1B3 Missense_Mutation p.S415L 0.43 tolerated(0.07) benign(0.052) TCGA-EE-A29H-06 12 27573413 27573413 A G ARNTL2 Missense_Mutation p.E620G 0.46 deleterious(0) possibly_damaging(0.821) TCGA-EE-A29H-06 12 48372397 48372397 C T COL2A1 Missense_Mutation p.G960R 0.47 unknown(0) TCGA-EE-A29H-06 12 51695882 51695882 C T BIN2 Nonsense_Mutation p.W110* 0.36 TCGA-EE-A29H-06 12 51751232 51751232 G A GALNT6 Silent p.I501I 0.52 TCGA-EE-A29H-06 12 52979799 52979799 C T KRT72 Silent p.G501G 0.42 TCGA-EE-A29H-06 12 53895946 53895946 C T TARBP2 Silent p.T67T 0.37 TCGA-EE-A29H-06 12 56088425 56088425 C T ITGA7 Missense_Mutation p.G755R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 12 5687641 5687641 G A ANO2 Silent p.P759P 0.40 TCGA-EE-A29H-06 12 5756941 5756941 C T ANO2 Silent p.K524K 0.39 TCGA-EE-A29H-06 12 6669270 6669270 G T NOP2 Missense_Mutation p.Q628K 0.49 tolerated(0.32) benign(0.001) TCGA-EE-A29H-06 12 6772291 6772291 C T ING4 5'UTR 0.44 TCGA-EE-A29H-06 12 72863581 72863581 C G TRHDE Missense_Mutation p.N408K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 12 7651598 7651598 C T CD163 Missense_Mutation p.G215E 0.41 tolerated(0.13) possibly_damaging(0.534) TCGA-EE-A29H-06 12 8329984 8329984 C T ZNF705A Silent p.A236A 0.36 TCGA-EE-A29H-06 12 9302168 9302168 G A PZP Missense_Mutation p.P1472L 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29H-06 12 9302169 9302169 G A PZP Missense_Mutation p.P1472S 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A29H-06 12 95397502 95397502 C T NDUFA12 5'UTR 0.46 TCGA-EE-A29H-06 12 95397503 95397503 C T NDUFA12 5'UTR 0.46 TCGA-EE-A29H-06 12 95668613 95668613 C T VEZT Missense_Mutation p.S315L 0.43 deleterious(0) possibly_damaging(0.794) TCGA-EE-A29H-06 12 97043713 97043713 G A C12orf55 Missense_Mutation p.E1579K 0.35 tolerated(0.39) benign(0.031) TCGA-EE-A29H-06 13 103718278 103718278 C T SLC10A2 Missense_Mutation p.G108R 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A29H-06 13 113744218 113744218 C T MCF2L Intron 0.38 TCGA-EE-A29H-06 13 20024238 20024238 C T TPTE2 Silent p.A317A 0.26 TCGA-EE-A29H-06 13 21375002 21375002 A G XPO4 Missense_Mutation p.Y649H 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A29H-06 13 29599548 29599548 G A MTUS2 Missense_Mutation p.G248E 0.45 tolerated(0.88) benign(0.013) TCGA-EE-A29H-06 13 32799923 32799923 C T FRY Intron 0.38 TCGA-EE-A29H-06 13 76416006 76416006 A G LMO7 Silent p.Q1073Q 0.40 TCGA-EE-A29H-06 13 78492623 78492623 C T EDNRB Missense_Mutation p.R119K 0.35 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A29H-06 13 99890808 99890808 G A UBAC2 Silent p.Q53Q 0.35 TCGA-EE-A29H-06 14 101201251 101201251 C T DLK1 3'UTR 0.33 TCGA-EE-A29H-06 14 106405762 106405762 C T IGHV6-1 Missense_Mutation p.G71E 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29H-06 14 106878068 106878068 G A IGHV4-39 Silent p.L3L 0.48 TCGA-EE-A29H-06 14 20404348 20404348 G A OR4K1 Missense_Mutation p.D175N 0.21 deleterious(0.02) benign(0.029) TCGA-EE-A29H-06 14 22466140 22466140 G A TRAV17 Missense_Mutation p.G24R 0.42 tolerated(0.53) benign(0.01) TCGA-EE-A29H-06 14 22466141 22466141 G A TRAV17 Missense_Mutation p.G24E 0.42 tolerated(1) benign(0.004) TCGA-EE-A29H-06 14 36943034 36943034 G A SFTA3 3'UTR 0.31 TCGA-EE-A29H-06 14 38016157 38016157 C T MIPOL1 Missense_Mutation p.T437I 0.39 deleterious(0) probably_damaging(0.974) TCGA-EE-A29H-06 14 59930419 59930419 G A GPR135 3'UTR 0.44 TCGA-EE-A29H-06 14 70634072 70634072 G A SLC8A3 Silent p.I356I 0.37 TCGA-EE-A29H-06 14 71197414 71197414 T A MAP3K9 Missense_Mutation p.N1014Y 0.33 tolerated(0.4) probably_damaging(0.961) TCGA-EE-A29H-06 14 91780333 91780333 C T CCDC88C Silent p.L609L 0.25 TCGA-EE-A29H-06 14 94756352 94756352 C T SERPINA10 Missense_Mutation p.M193I 0.36 tolerated(0.21) benign(0.015) TCGA-EE-A29H-06 15 100269697 100269697 G A LYSMD4 Silent p.D175D 0.38 TCGA-EE-A29H-06 15 34130190 34130190 A G RYR3 Silent p.E4003E 0.36 TCGA-EE-A29H-06 15 43748891 43748891 G A TP53BP1 Nonsense_Mutation p.R639* 0.40 TCGA-EE-A29H-06 15 51669683 51669683 G A GLDN Missense_Mutation p.G134D 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A29H-06 15 51757791 51757791 G A DMXL2 Silent p.F2526F 0.33 TCGA-EE-A29H-06 15 57836732 57836732 G A CGNL1 Missense_Mutation p.G1146E 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A29H-06 15 65982847 65982847 A G DENND4A Missense_Mutation p.V1361A 0.47 tolerated(0.09) possibly_damaging(0.519) TCGA-EE-A29H-06 15 73995207 73995207 C A CD276 Nonsense_Mutation p.Y171* 0.35 TCGA-EE-A29H-06 15 73995208 73995208 C T CD276 Missense_Mutation p.P172S 0.37 deleterious(0) probably_damaging(0.992) TCGA-EE-A29H-06 15 74659681 74659681 G A CYP11A1 Silent p.F82F 0.41 TCGA-EE-A29H-06 15 80460457 80460457 C T FAH Silent p.I173I 0.28 TCGA-EE-A29H-06 15 88476364 88476364 C T NTRK3 Missense_Mutation p.E590K 0.51 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29H-06 16 10729637 10729637 C T TEKT5 Missense_Mutation p.D409N 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A29H-06 16 11000503 11000503 C T CIITA Missense_Mutation p.P385L 0.38 tolerated(0.66) benign(0.001) TCGA-EE-A29H-06 16 1245969 1245969 G A CACNA1H Missense_Mutation p.A197T 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 16 1392054 1392054 G A BAIAP3 Missense_Mutation p.G317S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 16 1392055 1392055 G A BAIAP3 Missense_Mutation p.G317D 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 16 1503867 1503867 G A CLCN7 Silent p.A394A 0.35 TCGA-EE-A29H-06 16 22926571 22926571 C T HS3ST2 Silent p.F264F 0.35 TCGA-EE-A29H-06 16 23117577 23117577 G A USP31 Missense_Mutation p.P304S 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A29H-06 16 31195198 31195198 A T FUS Silent p.S70S 0.43 TCGA-EE-A29H-06 16 58589801 58589802 - A CNOT1 Frame_Shift_Ins p.Q831Sfs*11 0.27 TCGA-EE-A29H-06 16 67197735 67197735 C T HSF4 5'UTR 0.30 TCGA-EE-A29H-06 16 67197739 67197739 C - HSF4 5'UTR 0.24 TCGA-EE-A29H-06 16 77232134 77232134 C A MON1B Missense_Mutation p.P525T 0.66 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A29H-06 16 9858710 9858710 G A GRIN2A Silent p.L897L 0.35 TCGA-EE-A29H-06 17 10404792 10404792 C T MYH1 Missense_Mutation p.E1125K 0.61 deleterious(0.03) possibly_damaging(0.617) TCGA-EE-A29H-06 17 2898644 2898644 C T RAP1GAP2 Silent p.L310L 0.68 TCGA-EE-A29H-06 17 36375139 36375139 C T RP11-1407O15.2 Missense_Mutation p.E127K 0.39 TCGA-EE-A29H-06 17 36484236 36484236 C T GPR179 Missense_Mutation p.G1739E 0.71 tolerated(0.07) benign(0.063) TCGA-EE-A29H-06 17 41008367 41008367 G A AOC3 Missense_Mutation p.G698R 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 17 49067086 49067086 G A SPAG9 Missense_Mutation p.P922L 0.47 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29H-06 17 52991127 52991127 C T TOM1L1 Missense_Mutation p.P131S 0.39 tolerated(0.08) benign(0.255) TCGA-EE-A29H-06 17 61498089 61498089 C T TANC2 Silent p.S1582S 0.39 TCGA-EE-A29H-06 17 72937741 72937741 G A OTOP3 Missense_Mutation p.M109I 0.39 tolerated(0.13) probably_damaging(0.985) TCGA-EE-A29H-06 17 7682565 7682565 G A DNAH2 Missense_Mutation p.G1849E 0.60 probably_damaging(1) TCGA-EE-A29H-06 17 77768488 77768488 G A CBX8 Silent p.T372T 0.37 TCGA-EE-A29H-06 17 78073453 78073453 G A CCDC40 Missense_Mutation p.R1103Q 0.38 tolerated(0.05) probably_damaging(0.96) TCGA-EE-A29H-06 18 14105163 14105163 G A ZNF519 Missense_Mutation p.S459F 0.33 deleterious(0.01) benign(0.028) TCGA-EE-A29H-06 18 42643245 42643245 G A SETBP1 Missense_Mutation p.R1458K 0.27 deleterious(0) probably_damaging(0.979) TCGA-EE-A29H-06 18 45555835 45555835 C T ZBTB7C Silent p.E552E 0.56 TCGA-EE-A29H-06 18 50929209 50929209 C T DCC Missense_Mutation p.R961C 0.39 deleterious(0) probably_damaging(0.981) TCGA-EE-A29H-06 18 5416333 5416333 G A EPB41L3 Silent p.S517S 0.32 TCGA-EE-A29H-06 18 66564531 66564531 G A CCDC102B Missense_Mutation p.E377K 0.44 tolerated(0.05) probably_damaging(0.968) TCGA-EE-A29H-06 18 72346877 72346877 C T ZNF407 Missense_Mutation p.P1301L 0.26 deleterious(0) benign(0.231) TCGA-EE-A29H-06 18 9886232 9886232 G A TXNDC2 Missense_Mutation p.E21K 0.44 tolerated(0.38) benign(0.038) TCGA-EE-A29H-06 19 110771 110771 C T OR4F17 Silent p.I31I 0.26 TCGA-EE-A29H-06 19 11422824 11422824 C T TSPAN16 Missense_Mutation p.H205Y 0.60 tolerated(0.77) benign(0.272) TCGA-EE-A29H-06 19 12298788 12298788 C T ZNF136 Missense_Mutation p.P532L 0.63 deleterious(0) benign(0.012) TCGA-EE-A29H-06 19 13868275 13868275 C T CCDC130 Missense_Mutation p.H62Y 0.63 deleterious(0) probably_damaging(0.984) TCGA-EE-A29H-06 19 15350486 15350486 G A BRD4 Silent p.P1143P 0.69 TCGA-EE-A29H-06 19 15350487 15350487 G A BRD4 Missense_Mutation p.P1143L 0.69 possibly_damaging(0.713) TCGA-EE-A29H-06 19 17015360 17015360 C T CPAMD8 Missense_Mutation p.G1391R 0.67 deleterious(0) probably_damaging(0.965) TCGA-EE-A29H-06 19 22155686 22155686 C T ZNF208 Missense_Mutation p.G717E 0.78 deleterious(0.02) benign(0.161) TCGA-EE-A29H-06 19 24102252 24102252 T A ZNF726 Missense_Mutation p.N27K 0.60 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29H-06 19 44946773 44946773 C T ZNF229 Missense_Mutation p.D23N 0.68 tolerated(0.37) benign(0.001) TCGA-EE-A29H-06 19 463968 463968 G A ODF3L2 Missense_Mutation p.T249I 0.56 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A29H-06 19 48981352 48981352 C - CYTH2 Frame_Shift_Del p.R279Afs*30 0.44 TCGA-EE-A29H-06 19 5110694 5110694 C T KDM4B Missense_Mutation p.P327L 0.63 probably_damaging(0.97) TCGA-EE-A29H-06 19 5110695 5110695 C T KDM4B Silent p.P327P 0.63 TCGA-EE-A29H-06 19 51274004 51274004 C T GPR32 Silent p.I49I 0.68 TCGA-EE-A29H-06 19 51983636 51983636 C T CEACAM18 Silent p.I95I 0.69 TCGA-EE-A29H-06 19 53762534 53762534 T C VN1R2 Silent p.N302N 0.64 TCGA-EE-A29H-06 19 54197726 54197726 C T MIR526B RNA 0.79 TCGA-EE-A29H-06 19 54946739 54946739 G A TTYH1 Silent p.L381L 0.76 TCGA-EE-A29H-06 19 9082508 9082508 C T MUC16 Missense_Mutation p.E3103K 0.74 unknown(0) TCGA-EE-A29H-06 1 11855394 11855394 G A MTHFR Silent p.S264S 0.31 TCGA-EE-A29H-06 1 120342462 120342462 G A REG4 Silent p.N63N 0.37 TCGA-EE-A29H-06 1 152286842 152286842 C T FLG Missense_Mutation p.G174R 0.44 benign(0.066) TCGA-EE-A29H-06 1 153084960 153084960 C T SPRR2F 3'UTR 0.47 TCGA-EE-A29H-06 1 153536302 153536302 G A S100A2 Missense_Mutation p.H17Y 0.41 deleterious(0.04) possibly_damaging(0.483) TCGA-EE-A29H-06 1 155313129 155313129 A G ASH1L Silent p.L2757L 0.40 TCGA-EE-A29H-06 1 155932915 155932915 G A ARHGEF2 Missense_Mutation p.R262C 0.25 deleterious(0.01) possibly_damaging(0.906) TCGA-EE-A29H-06 1 157567735 157567735 G A FCRL4 5'UTR 0.41 TCGA-EE-A29H-06 1 160106104 160106104 C T ATP1A2 Missense_Mutation p.S836F 0.38 deleterious(0) benign(0.151) TCGA-EE-A29H-06 1 16892178 16892178 G A NBPF1 Missense_Mutation p.S1005F 0.05 deleterious(0.03) benign(0.109) TCGA-EE-A29H-06 1 172634809 172634809 G A FASLG Missense_Mutation p.G167R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 1 173493196 173493196 G T SLC9C2 Missense_Mutation p.P851Q 0.40 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A29H-06 1 175292613 175292613 C A TNR Splice_Site p.X1320_splice 0.48 TCGA-EE-A29H-06 1 18807905 18807905 G A KLHDC7A Missense_Mutation p.E144K 0.41 tolerated(0.07) possibly_damaging(0.625) TCGA-EE-A29H-06 1 19630750 19630750 A G AKR7A2 Missense_Mutation p.V350A 0.48 tolerated(0.1) benign(0.039) TCGA-EE-A29H-06 1 196883788 196883788 C T CFHR4 Silent p.F447F 0.14 TCGA-EE-A29H-06 1 201039427 201039427 G A CACNA1S Missense_Mutation p.S778F 0.40 deleterious(0) possibly_damaging(0.739) TCGA-EE-A29H-06 1 203698755 203698755 C T ATP2B4 Intron 0.38 TCGA-EE-A29H-06 1 204923977 204923977 G A NFASC Missense_Mutation p.E145K 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 1 207307801 207307801 G A C4BPA Silent p.R379R 0.45 TCGA-EE-A29H-06 1 212912027 212912027 G A NSL1 Missense_Mutation p.S190F 0.47 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A29H-06 1 240966207 240966207 T A RGS7 Missense_Mutation p.K452N 0.52 deleterious(0) possibly_damaging(0.529) TCGA-EE-A29H-06 1 246091332 246091332 G A SMYD3 Silent p.I201I 0.40 TCGA-EE-A29H-06 1 247464520 247464520 G A ZNF496 Silent p.I355I 0.32 TCGA-EE-A29H-06 1 247712378 247712378 G A GCSAML 5'Flank 0.50 TCGA-EE-A29H-06 1 248343973 248343973 G A OR2M2 Missense_Mutation p.G229E 0.32 tolerated(0.63) benign(0.139) TCGA-EE-A29H-06 1 248436656 248436656 C T OR2T33 Missense_Mutation p.G154E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29H-06 1 248457919 248457919 C T OR2T12 Silent p.%3D 0.29 TCGA-EE-A29H-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.25 deleterious(0.03) benign(0.232) TCGA-EE-A29H-06 1 248617058 248617058 G A OR2T2 Silent p.V320V 0.38 TCGA-EE-A29H-06 1 27721040 27721040 T C GPR3 Silent p.I246I 0.33 TCGA-EE-A29H-06 1 3321447 3321447 G A PRDM16 Silent p.V343V 0.36 TCGA-EE-A29H-06 1 3673360 3673360 C T CCDC27 Missense_Mutation p.S206F 0.42 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29H-06 1 47498960 47498960 C T CYP4X1 Missense_Mutation p.R138C 0.35 tolerated(0.06) benign(0.024) TCGA-EE-A29H-06 1 62672456 62672456 G A L1TD1 Missense_Mutation p.M52I 0.50 tolerated(0.25) unknown(0) TCGA-EE-A29H-06 1 70504533 70504533 G A LRRC7 Missense_Mutation p.G971E 0.49 tolerated(0.1) benign(0.223) TCGA-EE-A29H-06 1 71533343 71533343 G A ZRANB2 Intron 0.62 TCGA-EE-A29H-06 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.45 tolerated(0.4) possibly_damaging(0.703) TCGA-EE-A29H-06 20 10286835 10286835 G A SNAP25 Missense_Mutation p.G204E 0.20 tolerated(0.54) possibly_damaging(0.753) TCGA-EE-A29H-06 20 2290449 2290449 G A TGM3 Missense_Mutation p.E52K 0.37 deleterious(0.01) benign(0.243) TCGA-EE-A29H-06 20 29978302 29978302 G A DEFB119 5'Flank 0.44 TCGA-EE-A29H-06 20 30432526 30432526 G A FOXS1 Missense_Mutation p.P274S 0.50 deleterious(0.02) benign(0.013) TCGA-EE-A29H-06 20 32000165 32000165 G A SNTA1 Missense_Mutation p.S326F 0.40 tolerated(0.14) benign(0.406) TCGA-EE-A29H-06 20 32268181 32268181 C A E2F1 Silent p.L101L 0.35 TCGA-EE-A29H-06 20 37005445 37005445 C T LBP 3'UTR 0.31 TCGA-EE-A29H-06 20 40864896 40864896 C T PTPRT Missense_Mutation p.R772K 0.39 tolerated(0.52) benign(0.018) TCGA-EE-A29H-06 20 45022720 45022720 G A ELMO2 Silent p.P29P 0.23 TCGA-EE-A29H-06 20 45022721 45022721 G A ELMO2 Missense_Mutation p.P29L 0.23 deleterious(0) possibly_damaging(0.721) TCGA-EE-A29H-06 20 49225065 49225065 C T FAM65C Missense_Mutation p.E269K 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 20 5294721 5294721 C T PROKR2 Missense_Mutation p.D99N 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29H-06 20 54974330 54974330 C T CSTF1 Missense_Mutation p.S318F 0.37 deleterious(0) possibly_damaging(0.827) TCGA-EE-A29H-06 20 58416569 58416569 G A PHACTR3 Silent p.T522T 0.60 TCGA-EE-A29H-06 20 60773847 60773847 G A MTG2 Missense_Mutation p.G209E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 21 15599451 15599451 C T RBM11 Missense_Mutation p.S228L 0.66 deleterious_low_confidence(0) benign(0.078) TCGA-EE-A29H-06 21 31538540 31538540 G A CLDN17 Silent p.F132F 0.73 TCGA-EE-A29H-06 21 44479065 44479065 G A CBS Missense_Mutation p.R413C 0.58 deleterious(0.05) benign(0.01) TCGA-EE-A29H-06 22 17468949 17468949 G A GAB4 Missense_Mutation p.P196L 0.36 tolerated(0.08) possibly_damaging(0.908) TCGA-EE-A29H-06 22 17468950 17468950 G A GAB4 Missense_Mutation p.P196S 0.35 tolerated(0.19) possibly_damaging(0.857) TCGA-EE-A29H-06 22 18904434 18904434 T C PRODH Missense_Mutation p.N499D 0.45 deleterious(0) probably_damaging(0.986) TCGA-EE-A29H-06 22 20073709 20073709 C T DGCR8 Missense_Mutation p.L75F 0.33 tolerated_low_confidence(0.15) benign(0.055) TCGA-EE-A29H-06 22 23256459 23256459 G A IGLJ5 Missense_Mutation p.G18R 0.41 unknown(0) TCGA-EE-A29H-06 22 31524530 31524530 C T INPP5J Missense_Mutation p.P327S 0.35 tolerated(0.08) benign(0.09) TCGA-EE-A29H-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 22 36650944 36650944 G A APOL1 Intron 0.31 TCGA-EE-A29H-06 22 37524824 37524824 G A IL2RB Missense_Mutation p.S323L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 22 50192641 50192641 C T BRD1 Missense_Mutation p.E551K 0.25 deleterious(0) benign(0.26) TCGA-EE-A29H-06 2 103236556 103236556 G A SLC9A2 Silent p.E83E 0.46 TCGA-EE-A29H-06 2 105883861 105883861 G A TGFBRAP1 Silent p.S854S 0.38 TCGA-EE-A29H-06 2 11944620 11944620 C T LPIN1 Silent p.C744C 0.46 TCGA-EE-A29H-06 2 131099732 131099732 C T CCDC115 5'UTR 0.35 TCGA-EE-A29H-06 2 135711820 135711820 C T CCNT2 Silent p.L599L 0.32 TCGA-EE-A29H-06 2 162833301 162833301 G A SLC4A10 Missense_Mutation p.E1087K 0.50 deleterious(0) probably_damaging(0.991) TCGA-EE-A29H-06 2 166012375 166012375 C T SCN3A Missense_Mutation p.R357Q 0.33 tolerated(0.1) probably_damaging(0.964) TCGA-EE-A29H-06 2 168107738 168107738 C T XIRP2 Missense_Mutation p.S3279F 0.47 possibly_damaging(0.822) TCGA-EE-A29H-06 2 171687659 171687659 C T GAD1 Silent p.I168I 0.50 TCGA-EE-A29H-06 2 176959219 176959219 C A HOXD13 Missense_Mutation p.L265I 0.36 tolerated(0.4) benign(0.147) TCGA-EE-A29H-06 2 176981980 176981980 C T HOXD10 Missense_Mutation p.P140L 0.40 tolerated(0.22) probably_damaging(0.917) TCGA-EE-A29H-06 2 179569693 179569693 C T TTN Missense_Mutation p.E9869K 0.41 TCGA-EE-A29H-06 2 179596940 179596940 C T TTN Missense_Mutation p.E5586K 0.33 TCGA-EE-A29H-06 2 179611649 179611649 C T TTN Intron 0.33 TCGA-EE-A29H-06 2 182763783 182763783 G A SSFA2 Silent p.Q149Q 0.38 TCGA-EE-A29H-06 2 189599238 189599238 G A DIRC1 3'UTR 0.37 TCGA-EE-A29H-06 2 190554657 190554657 C T ANKAR Missense_Mutation p.P336S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 2 209302496 209302496 C T PTH2R Nonsense_Mutation p.R101* 0.37 TCGA-EE-A29H-06 2 212989485 212989485 A G ERBB4 Missense_Mutation p.F76L 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A29H-06 2 216914081 216914081 G A PECR Nonsense_Mutation p.Q207* 0.44 TCGA-EE-A29H-06 2 216914082 216914082 G A PECR Silent p.S206S 0.44 TCGA-EE-A29H-06 2 218940309 218940309 C T RUFY4 Missense_Mutation p.S385L 0.49 tolerated(0.4) benign(0.001) TCGA-EE-A29H-06 2 237272552 237272552 C T IQCA1 Silent p.G580G 0.48 TCGA-EE-A29H-06 2 28836922 28836922 C T PLB1 Missense_Mutation p.R1052W 0.39 deleterious(0) probably_damaging(0.972) TCGA-EE-A29H-06 2 54885066 54885066 C T SPTBN1 Silent p.S2042S 0.36 TCGA-EE-A29H-06 2 75923424 75923424 A T GCFC2 Silent p.L245L 0.42 TCGA-EE-A29H-06 2 79384343 79384343 C T REG3A 3'UTR 0.43 TCGA-EE-A29H-06 2 89417004 89417004 C T IGKV1-17 Silent p.Q60Q 0.45 TCGA-EE-A29H-06 2 95940298 95940298 C T PROM2 5'UTR 0.49 TCGA-EE-A29H-06 3 112358255 112358255 G A CCDC80 Silent p.L166L 0.77 TCGA-EE-A29H-06 3 113377731 113377741 TCTGATAATGC - KIAA2018 Frame_Shift_Del p.A930Cfs*17 0.56 TCGA-EE-A29H-06 3 121137201 121137201 G A STXBP5L Missense_Mutation p.G1106R 0.60 deleterious(0) probably_damaging(0.96) TCGA-EE-A29H-06 3 13381751 13381751 G A NUP210 Silent p.I1092I 0.54 TCGA-EE-A29H-06 3 13393591 13393591 G A NUP210 Missense_Mutation p.P908S 0.47 deleterious(0) benign(0.265) TCGA-EE-A29H-06 3 13393592 13393592 G A NUP210 Silent p.H907H 0.45 TCGA-EE-A29H-06 3 142753812 142753812 T G U2SURP Missense_Mutation p.F646V 0.62 deleterious(0) probably_damaging(0.98) TCGA-EE-A29H-06 3 151134124 151134124 C T MED12L Missense_Mutation p.P2073S 0.87 tolerated_low_confidence(0.44) benign(0.002) TCGA-EE-A29H-06 3 151134125 151134125 C T MED12L Missense_Mutation p.P2073L 0.87 tolerated_low_confidence(0.17) benign(0.002) TCGA-EE-A29H-06 3 174814891 174814891 C T NAALADL2 Missense_Mutation p.R119C 0.76 deleterious(0) possibly_damaging(0.614) TCGA-EE-A29H-06 3 183884653 183884653 C T DVL3 Missense_Mutation p.S363F 0.35 deleterious(0) probably_damaging(0.921) TCGA-EE-A29H-06 3 186390585 186390585 G A HRG Missense_Mutation p.E190K 0.42 tolerated(0.16) benign(0.292) TCGA-EE-A29H-06 3 189612137 189612137 C T TP63 Missense_Mutation p.S630F 0.70 deleterious(0) possibly_damaging(0.691) TCGA-EE-A29H-06 3 193854814 193854814 A G HES1 Missense_Mutation p.N90S 0.35 tolerated(0.44) benign(0.034) TCGA-EE-A29H-06 3 26751332 26751332 G A LRRC3B Missense_Mutation p.E57K 0.53 tolerated(0.07) probably_damaging(0.946) TCGA-EE-A29H-06 3 26751403 26751403 C T LRRC3B Silent p.P80P 0.42 TCGA-EE-A29H-06 3 36763055 36763055 G A DCLK3 Silent p.T516T 0.28 TCGA-EE-A29H-06 3 38753715 38753715 G A SCN10A Silent p.F1342F 0.32 TCGA-EE-A29H-06 3 38755538 38755538 C T SCN10A Missense_Mutation p.E1239K 0.27 tolerated(0.06) benign(0.001) TCGA-EE-A29H-06 3 39374694 39374694 C T CCR8 Missense_Mutation p.T291I 0.55 tolerated(0.85) benign(0.088) TCGA-EE-A29H-06 3 48507853 48507853 G A TREX1 5'UTR 0.27 TCGA-EE-A29H-06 3 48686246 48686246 C T CELSR3 Missense_Mutation p.R2228Q 0.35 tolerated(0.27) benign(0.006) TCGA-EE-A29H-06 3 51895682 51895682 C T IQCF2 5'UTR 0.08 TCGA-EE-A29H-06 3 54913431 54913431 C T CACNA2D3 Missense_Mutation p.P613S 0.75 deleterious(0) probably_damaging(0.972) TCGA-EE-A29H-06 3 66502043 66502043 T A LRIG1 Missense_Mutation p.N102I 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A29H-06 3 85961555 85961555 C T CADM2 Missense_Mutation p.R181C 0.61 deleterious(0) possibly_damaging(0.827) TCGA-EE-A29H-06 4 100131307 100131307 G A ADH6 Silent p.L167L 0.41 TCGA-EE-A29H-06 4 104511023 104511023 C T TACR3 Missense_Mutation p.R405K 0.47 deleterious(0.02) possibly_damaging(0.729) TCGA-EE-A29H-06 4 123280818 123280818 T C KIAA1109 Silent p.Y4914Y 0.37 TCGA-EE-A29H-06 4 128751808 128751808 C T HSPA4L Missense_Mutation p.H728Y 0.36 deleterious(0) probably_damaging(0.989) TCGA-EE-A29H-06 4 149357223 149357223 G A NR3C2 Missense_Mutation p.P264S 0.39 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-EE-A29H-06 4 154335976 154335976 T A MND1 Missense_Mutation p.F195L 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 4 155366 155366 C T ZNF718 RNA 0.62 TCGA-EE-A29H-06 4 158256915 158256915 C T GRIA2 Silent p.I453I 0.54 TCGA-EE-A29H-06 4 164271808 164271808 C T NPY5R Missense_Mutation p.S128L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 4 166999147 166999147 G A TLL1 Missense_Mutation p.E803K 0.19 tolerated(0.36) benign(0.005) TCGA-EE-A29H-06 4 169377257 169377257 G A DDX60L Missense_Mutation p.S257L 0.48 deleterious(0.05) benign(0.041) TCGA-EE-A29H-06 4 173930333 173930333 G A GALNTL6 Missense_Mutation p.R459Q 0.55 tolerated(0.37) benign(0.037) TCGA-EE-A29H-06 4 1807557 1807557 G A FGFR3 Missense_Mutation p.D578N 0.66 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A29H-06 4 183600836 183600836 C T TENM3 Silent p.L448L 0.27 TCGA-EE-A29H-06 4 186291813 186291813 G A LRP2BP Missense_Mutation p.A320V 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 4 20618795 20618795 G A SLIT2 Silent p.R1370R 0.34 TCGA-EE-A29H-06 4 68780325 68780325 C T TMPRSS11A Missense_Mutation p.G362E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 4 70146246 70146246 C T UGT2B28 Silent p.L10L 0.42 TCGA-EE-A29H-06 4 70146570 70146570 G A UGT2B28 Missense_Mutation p.E118K 0.40 tolerated(0.44) benign(0.002) TCGA-EE-A29H-06 5 135382095 135382095 C T TGFBI Missense_Mutation p.R124C 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 5 13714639 13714639 C T DNAH5 Missense_Mutation p.D4334N 0.41 possibly_damaging(0.822) TCGA-EE-A29H-06 5 137593408 137593408 G A GFRA3 Silent p.I235I 0.55 TCGA-EE-A29H-06 5 13850770 13850770 G A DNAH5 Missense_Mutation p.S1702F 0.34 possibly_damaging(0.788) TCGA-EE-A29H-06 5 13900349 13900349 C T DNAH5 Missense_Mutation p.R742Q 0.32 possibly_damaging(0.553) TCGA-EE-A29H-06 5 140182352 140182352 G A PCDHA3 Missense_Mutation p.D524N 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29H-06 5 140474800 140474800 G A PCDHB2 Silent p.L142L 0.45 TCGA-EE-A29H-06 5 140589046 140589046 G A PCDHB12 Silent p.R189R 0.36 TCGA-EE-A29H-06 5 140731171 140731171 C T PCDHGB1 Silent p.F448F 0.37 TCGA-EE-A29H-06 5 145834747 145834747 C T TCERG1 Missense_Mutation p.P63L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-EE-A29H-06 5 150867732 150867732 G C SLC36A1 Missense_Mutation p.V450L 0.50 tolerated(0.67) benign(0.007) TCGA-EE-A29H-06 5 154396923 154396923 C T KIF4B Silent p.I1168I 0.39 TCGA-EE-A29H-06 5 158523987 158523987 C T EBF1 Missense_Mutation p.E96K 0.48 deleterious(0.02) possibly_damaging(0.498) TCGA-EE-A29H-06 5 159776484 159776484 G A C1QTNF2 Silent p.S228S 0.34 TCGA-EE-A29H-06 5 161116173 161116173 G A GABRA6 Missense_Mutation p.M148I 0.34 tolerated(0.08) probably_damaging(0.985) TCGA-EE-A29H-06 5 171295671 171295671 G A FBXW11 Missense_Mutation p.P533S 0.35 tolerated_low_confidence(0.08) benign(0.407) TCGA-EE-A29H-06 5 172752949 172752949 C T STC2 Silent p.E72E 0.41 TCGA-EE-A29H-06 5 174152000 174152000 C T MSX2 Missense_Mutation p.A113V 0.37 tolerated(0.12) benign(0.041) TCGA-EE-A29H-06 5 19838948 19838948 G A CDH18 Missense_Mutation p.R50C 0.36 deleterious(0) probably_damaging(0.985) TCGA-EE-A29H-06 5 31323136 31323136 C T CDH6 Silent p.F698F 0.38 TCGA-EE-A29H-06 5 34020709 34020709 G A C1QTNF3 Silent p.F313F 0.44 TCGA-EE-A29H-06 5 35065904 35065904 G A PRLR Missense_Mutation p.P386S 0.37 tolerated(0.47) benign(0.164) TCGA-EE-A29H-06 5 35874551 35874551 G A IL7R Missense_Mutation p.G236E 0.25 tolerated(1) benign(0.078) TCGA-EE-A29H-06 5 36039644 36039644 G A UGT3A2 Missense_Mutation p.P337L 0.44 deleterious(0) probably_damaging(0.969) TCGA-EE-A29H-06 5 41015533 41015533 C T MROH2B Missense_Mutation p.E978K 0.39 tolerated(0.48) benign(0.003) TCGA-EE-A29H-06 5 54403726 54403726 A G GZMA Missense_Mutation p.D107G 0.42 tolerated(0.09) possibly_damaging(0.655) TCGA-EE-A29H-06 5 58272190 58272190 G A PDE4D Missense_Mutation p.S606F 0.47 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29H-06 5 77334866 77334866 C T AP3B1 Splice_Site p.X937_splice 0.38 TCGA-EE-A29H-06 5 81601158 81601158 T C ATP6AP1L 5'UTR 0.40 TCGA-EE-A29H-06 5 81614090 81614090 A G ATP6AP1L Missense_Mutation p.S216G 0.30 tolerated(0.2) benign(0.034) TCGA-EE-A29H-06 5 90016858 90016858 G A GPR98 Missense_Mutation p.E3244K 0.37 possibly_damaging(0.636) TCGA-EE-A29H-06 6 100368857 100368857 C T MCHR2 Missense_Mutation p.E328K 0.76 tolerated(0.34) benign(0.002) TCGA-EE-A29H-06 6 101166119 101166119 G A ASCC3 Silent p.S637S 0.59 TCGA-EE-A29H-06 6 12123583 12123583 C T HIVEP1 Silent p.H1185H 0.29 TCGA-EE-A29H-06 6 128134804 128134804 G A THEMIS Missense_Mutation p.P328S 0.67 tolerated(0.19) benign(0.187) TCGA-EE-A29H-06 6 130761675 130761675 G A TMEM200A Silent p.E36E 0.70 TCGA-EE-A29H-06 6 142737093 142737093 A G GPR126 Missense_Mutation p.T944A 0.71 tolerated(0.07) benign(0.214) TCGA-EE-A29H-06 6 29323094 29323094 C T OR5V1 Silent p.R293R 0.52 TCGA-EE-A29H-06 6 32029401 32029401 G A TNXB Missense_Mutation p.S2422F 0.35 benign(0.372) TCGA-EE-A29H-06 6 32083621 32083621 C T ATF6B Silent p.Q669Q 0.40 TCGA-EE-A29H-06 6 37606430 37606430 G A MDGA1 Silent p.L850L 0.28 TCGA-EE-A29H-06 6 56494202 56494202 G A DST Missense_Mutation p.H904Y 0.36 probably_damaging(0.998) TCGA-EE-A29H-06 6 66054027 66054027 G A EYS Silent p.F501F 0.41 TCGA-EE-A29H-06 6 70976452 70976452 C T COL9A1 Missense_Mutation p.E437K 0.37 probably_damaging(0.998) TCGA-EE-A29H-06 6 74072839 74072839 C T KHDC3L Missense_Mutation p.P64L 0.66 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A29H-06 6 90039660 90039660 G A UBE2J1 Missense_Mutation p.S232F 0.67 tolerated(0.06) benign(0.011) TCGA-EE-A29H-06 7 103155840 103155840 G A RELN Silent p.R2637R 0.25 TCGA-EE-A29H-06 7 1132360 1132360 G C GPER1 Missense_Mutation p.R332S 0.36 deleterious(0) probably_damaging(0.96) TCGA-EE-A29H-06 7 122114563 122114563 G A CADPS2 Missense_Mutation p.R624C 0.38 deleterious(0.03) benign(0.049) TCGA-EE-A29H-06 7 136700446 136700446 G A CHRM2 Silent p.E278E 0.67 TCGA-EE-A29H-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.61 deleterious(0) probably_damaging(0.967) TCGA-EE-A29H-06 7 141721452 141721452 G C MGAM Missense_Mutation p.A209P 0.20 tolerated(0.25) benign(0.321) TCGA-EE-A29H-06 7 141755409 141755409 C T MGAM Silent p.I1122I 0.37 TCGA-EE-A29H-06 7 141755436 141755436 C T MGAM Silent p.L1131L 0.38 TCGA-EE-A29H-06 7 141755883 141755883 C T MGAM Silent p.N1189N 0.35 TCGA-EE-A29H-06 7 141756640 141756640 C G MGAM Missense_Mutation p.F1197L 0.33 tolerated(0.84) benign(0.003) TCGA-EE-A29H-06 7 141756713 141756713 C T MGAM Missense_Mutation p.P1222S 0.25 deleterious(0) probably_damaging(0.979) TCGA-EE-A29H-06 7 141758028 141758028 C G MGAM Missense_Mutation p.P1240R 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 7 142013243 142013243 G A TRBV4-1 Missense_Mutation p.G33E 0.39 tolerated(0.46) possibly_damaging(0.558) TCGA-EE-A29H-06 7 142247212 142247212 C T TRBV7-3 Missense_Mutation p.D82N 0.28 TCGA-EE-A29H-06 7 142459847 142459847 C T PRSS1 Silent p.I141I 0.15 TCGA-EE-A29H-06 7 144096917 144096917 C T NOBOX Missense_Mutation p.E363K 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29H-06 7 149492356 149492356 C T SSPO RNA 0.67 TCGA-EE-A29H-06 7 150439344 150439344 G A GIMAP5 Silent p.G39G 0.26 TCGA-EE-A29H-06 7 150553642 150553642 G A AOC1 Silent p.R28R 0.44 TCGA-EE-A29H-06 7 151133376 151133376 A G CRYGN Silent p.G102G 0.35 TCGA-EE-A29H-06 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.33 tolerated(0.1) possibly_damaging(0.816) TCGA-EE-A29H-06 7 4780638 4780638 C T FOXK1 Missense_Mutation p.P244S 0.29 deleterious(0.02) possibly_damaging(0.801) TCGA-EE-A29H-06 7 4780639 4780639 C T FOXK1 Missense_Mutation p.P244L 0.28 deleterious(0.02) possibly_damaging(0.572) TCGA-EE-A29H-06 7 6187441 6187441 C T USP42 Missense_Mutation p.P435L 0.49 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A29H-06 7 6187442 6187442 C T USP42 Silent p.P435P 0.49 TCGA-EE-A29H-06 7 76019609 76019609 C T SRCRB4D Missense_Mutation p.D499N 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 7 76825931 76825931 G A FGL2 Missense_Mutation p.R329C 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 7 76908111 76908111 C T CCDC146 Missense_Mutation p.L495F 0.52 tolerated(0.07) benign(0.338) TCGA-EE-A29H-06 7 77789394 77789394 G A MAGI2 Silent p.F931F 0.36 TCGA-EE-A29H-06 7 87179319 87179319 C T ABCB1 Missense_Mutation p.E468K 0.35 deleterious(0.02) possibly_damaging(0.463) TCGA-EE-A29H-06 7 87795214 87795214 T C ADAM22 Missense_Mutation p.F715S 0.42 tolerated(0.5) benign(0.001) TCGA-EE-A29H-06 7 99129032 99129032 G A ZKSCAN5 Silent p.Q560Q 0.28 TCGA-EE-A29H-06 8 108970342 108970342 C T RSPO2 Silent p.R194R 0.62 TCGA-EE-A29H-06 8 114327001 114327001 C T CSMD3 Missense_Mutation p.G67E 0.27 deleterious(0.03) possibly_damaging(0.651) TCGA-EE-A29H-06 8 121706062 121706062 G A SNTB1 Missense_Mutation p.P220S 0.56 tolerated(0.05) benign(0.05) TCGA-EE-A29H-06 8 141542581 141542581 G C AGO2 Missense_Mutation p.P802R 0.49 deleterious(0) probably_damaging(0.994) TCGA-EE-A29H-06 8 143561149 143561150 GC T BAI1 Frame_Shift_Del p.A608Sfs*37 0.17 TCGA-EE-A29H-06 8 144946401 144946401 C T EPPK1 Missense_Mutation p.E341K 0.27 probably_damaging(0.999) TCGA-EE-A29H-06 8 145057635 145057635 G A PARP10 Nonsense_Mutation p.Q708* 0.31 TCGA-EE-A29H-06 8 18257539 18257539 G A NAT2 Missense_Mutation p.R9K 0.60 deleterious(0.04) possibly_damaging(0.641) TCGA-EE-A29H-06 8 27762150 27762150 C T SCARA5 Intron 0.88 TCGA-EE-A29H-06 8 39495159 39495159 G A ADAM18 Missense_Mutation p.R255K 0.49 deleterious(0.03) possibly_damaging(0.814) TCGA-EE-A29H-06 8 52370162 52370162 C T PXDNL Missense_Mutation p.R293Q 0.40 tolerated(1) benign(0.007) TCGA-EE-A29H-06 8 55534779 55534779 C T RP1 Missense_Mutation p.P240S 0.45 tolerated(0.09) benign(0.125) TCGA-EE-A29H-06 8 55540286 55540286 C T RP1 Missense_Mutation p.P1282S 0.42 tolerated(0.14) benign(0.01) TCGA-EE-A29H-06 8 86043995 86043995 G A LRRCC1 Silent p.R589R 0.63 TCGA-EE-A29H-06 9 101552822 101552822 C T ANKS6 Silent p.R142R 0.41 TCGA-EE-A29H-06 9 113208240 113208240 G A SVEP1 Missense_Mutation p.S1447F 0.38 possibly_damaging(0.701) TCGA-EE-A29H-06 9 117845027 117845027 C T TNC Missense_Mutation p.E731K 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29H-06 9 125377538 125377538 C T OR1Q1 Silent p.I174I 0.38 TCGA-EE-A29H-06 9 125437956 125437956 C T OR1L3 Missense_Mutation p.P183L 0.40 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A29H-06 9 130700157 130700157 C T DPM2 5'UTR 0.19 TCGA-EE-A29H-06 9 130887690 130887690 G A PTGES2 Silent p.L104L 0.26 TCGA-EE-A29H-06 9 135102365 135102365 G A NTNG2 Silent p.R329R 0.19 TCGA-EE-A29H-06 9 136131545 136131545 C T RP11-430N14.4 5'Flank 0.64 TCGA-EE-A29H-06 9 137620555 137620555 G A COL5A1 Missense_Mutation p.E276K 0.43 benign(0.399) TCGA-EE-A29H-06 9 138742013 138742013 G A CAMSAP1 Nonsense_Mutation p.Q339* 0.58 TCGA-EE-A29H-06 9 139739813 139739813 C T C9orf172 Missense_Mutation p.S316L 0.47 tolerated(0.68) benign(0.002) TCGA-EE-A29H-06 9 21077205 21077205 C T IFNB1 3'UTR 0.67 TCGA-EE-A29H-06 9 23701406 23701406 T C ELAVL2 Silent p.G228G 0.61 TCGA-EE-A29H-06 9 23731048 23731048 C T ELAVL2 Missense_Mutation p.G102E 0.58 deleterious(0.03) probably_damaging(0.958) TCGA-EE-A29H-06 9 6241783 6241783 G A IL33 Missense_Mutation p.G30E 0.33 tolerated(0.15) benign(0.023) TCGA-EE-A29H-06 9 95481024 95481024 G A BICD2 Missense_Mutation p.R635C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29H-06 X 105450819 105450819 G T MUM1L1 Missense_Mutation p.S465I 0.73 deleterious(0) probably_damaging(0.972) TCGA-EE-A29H-06 X 119068486 119068486 C T NKAP Silent p.K236K 0.45 TCGA-EE-A29H-06 X 128873232 128873232 C T XPNPEP2 Missense_Mutation p.L15F 0.64 tolerated_low_confidence(0.09) benign(0.059) TCGA-EE-A29H-06 X 131197504 131197504 C T MST4 Missense_Mutation p.S106L 0.67 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29H-06 X 14936887 14936887 G A MOSPD2 Missense_Mutation p.E468K 0.39 tolerated(0.08) benign(0.06) TCGA-EE-A29H-06 X 15365419 15365419 A T FIGF Missense_Mutation p.C269S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29H-06 X 21581385 21581385 G A CNKSR2 Missense_Mutation p.E475K 0.37 deleterious(0.01) benign(0.158) TCGA-EE-A29H-06 X 21875139 21875139 G T YY2 Silent p.L179L 0.37 TCGA-EE-A29H-06 X 26212662 26212662 C T MAGEB6 Silent p.F233F 0.36 TCGA-EE-A29H-06 X 30577767 30577767 G A CXorf21 Missense_Mutation p.P236S 0.32 tolerated(0.07) possibly_damaging(0.861) TCGA-EE-A29H-06 X 3228724 3228724 C T MXRA5 Missense_Mutation p.S2507N 0.14 tolerated(0.27) benign(0.049) TCGA-EE-A29H-06 X 3238808 3238808 G A MXRA5 Missense_Mutation p.R1640C 0.43 deleterious(0.02) possibly_damaging(0.724) TCGA-EE-A29H-06 X 47044469 47044469 G A RBM10 Missense_Mutation p.E656K 0.28 deleterious(0) probably_damaging(0.98) TCGA-EE-A29H-06 X 49957272 49957272 C T AKAP4 Missense_Mutation p.D698N 0.33 deleterious(0.02) probably_damaging(1) TCGA-EE-A29H-06 X 54978347 54978347 G A PFKFB1 Silent p.R279R 0.45 TCGA-EE-A29H-06 X 65824906 65824906 C T EDA2R Missense_Mutation p.G84R 0.35 deleterious(0.03) possibly_damaging(0.449) TCGA-EE-A29H-06 X 77528801 77528801 C T CYSLTR1 Nonsense_Mutation p.W148* 0.42 TCGA-EE-A29H-06 X 86868974 86868974 G A KLHL4 Missense_Mutation p.E173K 0.43 deleterious(0.04) possibly_damaging(0.492) TCGA-EE-A29H-06 X 9905555 9905555 C T SHROOM2 Silent p.I1323I 0.37 TCGA-EE-A29L-06 10 101370489 101370489 G A SLC25A28 3'UTR 0.46 TCGA-EE-A29L-06 10 101563847 101563847 T G ABCC2 Missense_Mutation p.D427E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 10 102089628 102089628 C T PKD2L1 Missense_Mutation p.R78K 0.38 tolerated(0.17) benign(0.009) TCGA-EE-A29L-06 10 103899845 103899845 C T PPRC1 Missense_Mutation p.A527V 0.38 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A29L-06 10 104176661 104176661 G A PSD Silent p.S45S 0.47 TCGA-EE-A29L-06 10 104416920 104416920 C T TRIM8 Missense_Mutation p.R489C 0.36 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-EE-A29L-06 10 105174058 105174058 C T PDCD11 Missense_Mutation p.H448Y 0.35 tolerated(0.08) possibly_damaging(0.52) TCGA-EE-A29L-06 10 105330650 105330650 C T NEURL1 Missense_Mutation p.P36L 0.43 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-EE-A29L-06 10 105824202 105824202 C T COL17A1 Missense_Mutation p.G254R 0.59 unknown(0) TCGA-EE-A29L-06 10 105893452 105893452 C T WDR96 Missense_Mutation p.E1508K 0.39 tolerated(0.36) benign(0.108) TCGA-EE-A29L-06 10 105926467 105926467 C T WDR96 Missense_Mutation p.E940K 0.46 tolerated(0.29) possibly_damaging(0.493) TCGA-EE-A29L-06 10 105926468 105926468 C T WDR96 Silent p.K939K 0.46 TCGA-EE-A29L-06 10 105938810 105938810 C T WDR96 Missense_Mutation p.G813R 0.45 tolerated(0.1) benign(0.02) TCGA-EE-A29L-06 10 105947241 105947241 G A WDR96 Missense_Mutation p.T566I 0.35 tolerated(0.19) benign(0.001) TCGA-EE-A29L-06 10 106118293 106118293 T A CCDC147 Missense_Mutation p.N68K 0.38 deleterious(0.05) possibly_damaging(0.615) TCGA-EE-A29L-06 10 107022168 107022168 G A SORCS3 Missense_Mutation p.E1175K 0.35 deleterious(0.03) benign(0.099) TCGA-EE-A29L-06 10 108357117 108357117 A G SORCS1 Missense_Mutation p.L1086S 0.52 tolerated(0.2) probably_damaging(0.978) TCGA-EE-A29L-06 10 11047405 11047405 T A RP1-251M9.3 3'Flank 0.40 TCGA-EE-A29L-06 10 120353908 120353908 G A PRLHR Silent p.I283I 0.56 TCGA-EE-A29L-06 10 120801559 120801559 G A EIF3A Missense_Mutation p.P1158L 0.22 tolerated_low_confidence(0.52) possibly_damaging(0.713) TCGA-EE-A29L-06 10 120801560 120801560 G A EIF3A Missense_Mutation p.P1158S 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.641) TCGA-EE-A29L-06 10 121675306 121675306 C T SEC23IP Silent p.F483F 0.23 TCGA-EE-A29L-06 10 124358479 124358479 G A DMBT1 Missense_Mutation p.G1049D 0.48 deleterious(0.04) unknown(0) TCGA-EE-A29L-06 10 124380882 124380882 G A DMBT1 Missense_Mutation p.G1736D 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 10 124390604 124390604 G A DMBT1 Silent p.V1922V 0.69 TCGA-EE-A29L-06 10 124593228 124593228 G A CUZD1 Silent p.P537P 0.20 TCGA-EE-A29L-06 10 125650903 125650903 C T CPXM2 Silent p.R91R 0.33 TCGA-EE-A29L-06 10 1262970 1262970 G A ADARB2 Missense_Mutation p.P535S 0.32 tolerated(1) benign(0.016) TCGA-EE-A29L-06 10 126311720 126311720 G A FAM53B 3'UTR 0.27 TCGA-EE-A29L-06 10 12870807 12870807 C T CAMK1D Missense_Mutation p.S360L 0.42 deleterious_low_confidence(0.01) benign(0.059) TCGA-EE-A29L-06 10 134014413 134014413 G A DPYSL4 Missense_Mutation p.D346N 0.25 tolerated(0.09) probably_damaging(0.961) TCGA-EE-A29L-06 10 134218946 134218946 C T PWWP2B Silent p.P314P 0.15 TCGA-EE-A29L-06 10 134463968 134463968 G T INPP5A Missense_Mutation p.V89F 0.23 deleterious(0) benign(0.107) TCGA-EE-A29L-06 10 134893869 134893869 C T GPR123-AS1 3'Flank 0.38 TCGA-EE-A29L-06 10 135053291 135053291 C T VENTX Missense_Mutation p.P118L 0.18 deleterious(0) probably_damaging(0.915) TCGA-EE-A29L-06 10 135179550 135179550 G A ECHS1 Silent p.I223I 0.19 TCGA-EE-A29L-06 10 15255455 15255455 G A FAM171A1 Missense_Mutation p.S711F 0.44 deleterious(0) probably_damaging(0.995) TCGA-EE-A29L-06 10 15838110 15838110 T A FAM188A Missense_Mutation p.Y315F 0.29 tolerated(1) benign(0.02) TCGA-EE-A29L-06 10 20506404 20506404 G A PLXDC2 Missense_Mutation p.R391Q 0.28 tolerated(0.48) benign(0) TCGA-EE-A29L-06 10 21115453 21115453 C T NEBL Missense_Mutation p.E598K 0.30 tolerated(0.28) benign(0.131) TCGA-EE-A29L-06 10 24822121 24822121 G A KIAA1217 Silent p.E1123E 0.41 TCGA-EE-A29L-06 10 24831670 24831670 G A KIAA1217 Missense_Mutation p.E1195K 0.50 tolerated(0.06) benign(0.423) TCGA-EE-A29L-06 10 24834803 24834803 C T KIAA1217 Silent p.S1794S 0.36 TCGA-EE-A29L-06 10 25885576 25885576 C T GPR158 Missense_Mutation p.S668L 0.47 tolerated(1) benign(0.012) TCGA-EE-A29L-06 10 27537542 27537542 C T RP11-85G18.6 Intron 0.48 TCGA-EE-A29L-06 10 27687801 27687801 C T PTCHD3 Missense_Mutation p.E576K 0.61 tolerated(0.19) benign(0.021) TCGA-EE-A29L-06 10 28151526 28151526 A T ARMC4 Missense_Mutation p.F879Y 0.47 deleterious(0) probably_damaging(0.964) TCGA-EE-A29L-06 10 28378745 28378745 A G MPP7 Silent p.L326L 0.46 TCGA-EE-A29L-06 10 30306810 30306810 C T KIAA1462 3'UTR 0.40 TCGA-EE-A29L-06 10 30318758 30318758 G A KIAA1462 Missense_Mutation p.P107S 0.39 tolerated(0.06) possibly_damaging(0.662) TCGA-EE-A29L-06 10 45920485 45920485 C G ALOX5 Missense_Mutation p.R247G 0.21 deleterious(0.01) benign(0.036) TCGA-EE-A29L-06 10 45956867 45956867 G A MARCH8 Intron 0.64 TCGA-EE-A29L-06 10 46254773 46254773 C T FAM21C Missense_Mutation p.S520F 0.35 deleterious(0) benign(0.219) TCGA-EE-A29L-06 10 46967500 46967500 C T SYT15 Missense_Mutation p.E193K 0.12 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A29L-06 10 46999685 46999685 G A GPRIN2 Missense_Mutation p.G269R 0.17 tolerated(0.08) possibly_damaging(0.56) TCGA-EE-A29L-06 10 47086912 47086912 C T NPY4R Silent p.F43F 0.31 TCGA-EE-A29L-06 10 47915888 47915888 C T FAM21B Missense_Mutation p.S432F 0.23 deleterious(0) benign(0.086) TCGA-EE-A29L-06 10 48389662 48389662 C T RBP3 Missense_Mutation p.E406K 0.14 tolerated(0.13) benign(0.008) TCGA-EE-A29L-06 10 50690901 50690901 G A ERCC6 Silent p.T667T 0.42 TCGA-EE-A29L-06 10 50820177 50820177 C T SLC18A3 Missense_Mutation p.P464L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 10 51974591 51974591 C T ASAH2 Missense_Mutation p.G351E 0.86 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 10 5227116 5227116 G A AKR1CL1 5'Flank 0.70 TCGA-EE-A29L-06 10 54040554 54040554 C T PRKG1 Missense_Mutation p.S470L 0.56 tolerated(0.61) benign(0.147) TCGA-EE-A29L-06 10 61831209 61831209 G A ANK3 Missense_Mutation p.P3144S 0.50 probably_damaging(0.992) TCGA-EE-A29L-06 10 61941113 61941113 C T ANK3 Missense_Mutation p.G720R 0.38 probably_damaging(0.984) TCGA-EE-A29L-06 10 62023647 62023647 C T ANK3 Silent p.T215T 0.38 TCGA-EE-A29L-06 10 63759869 63759869 G A ARID5B Silent p.T174T 0.61 TCGA-EE-A29L-06 10 71166976 71166976 G A TACR2 Missense_Mutation p.L268F 0.55 tolerated(0.13) benign(0.078) TCGA-EE-A29L-06 10 71690233 71690233 G A COL13A1 Silent p.V525V 0.67 TCGA-EE-A29L-06 10 72192607 72192607 T A NODAL 3'UTR 0.56 TCGA-EE-A29L-06 10 73046512 73046512 G A UNC5B Missense_Mutation p.D207N 0.48 deleterious(0) possibly_damaging(0.686) TCGA-EE-A29L-06 10 73055663 73055663 C T UNC5B Silent p.S757S 0.43 TCGA-EE-A29L-06 10 75037095 75037095 G A TTC18 Missense_Mutation p.S878L 0.41 tolerated(0.13) benign(0.037) TCGA-EE-A29L-06 10 75397560 75397560 A G MYOZ1 Missense_Mutation p.M65T 0.45 tolerated(0.06) benign(0.129) TCGA-EE-A29L-06 10 76154057 76154057 C T ADK Silent p.I144I 0.36 TCGA-EE-A29L-06 10 76784832 76784832 A C KAT6B Silent p.S1163S 0.38 TCGA-EE-A29L-06 10 79603326 79603326 G A DLG5 Silent p.L335L 0.42 TCGA-EE-A29L-06 10 79603373 79603373 G A DLG5 Missense_Mutation p.A319V 0.44 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A29L-06 10 81701718 81701718 C T SFTPD Missense_Mutation p.G181E 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29L-06 10 85901294 85901294 C G GHITM Missense_Mutation p.P13R 0.33 deleterious(0) benign(0.128) TCGA-EE-A29L-06 10 86014182 86014182 A C RGR Missense_Mutation p.K209Q 0.56 deleterious(0.01) possibly_damaging(0.844) TCGA-EE-A29L-06 10 88439220 88439220 G A LDB3 Missense_Mutation p.E64K 0.55 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 10 88769434 88769434 C T RP11-96C23.10 3'Flank 0.34 TCGA-EE-A29L-06 10 89474791 89474791 C A PAPSS2 Missense_Mutation p.P230Q 0.41 deleterious(0.04) possibly_damaging(0.808) TCGA-EE-A29L-06 10 90486613 90486613 G A LIPK Missense_Mutation p.G56D 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29L-06 10 94822677 94822677 G A CYP26C1 Silent p.L210L 0.38 TCGA-EE-A29L-06 10 94822678 94822678 G A CYP26C1 Missense_Mutation p.A211T 0.40 tolerated(0.53) benign(0.012) TCGA-EE-A29L-06 10 95400711 95400711 A T PDE6C Missense_Mutation p.E591V 0.39 deleterious(0) probably_damaging(0.984) TCGA-EE-A29L-06 10 95422929 95422929 G A PDE6C Missense_Mutation p.E838K 0.43 tolerated(1) benign(0.001) TCGA-EE-A29L-06 10 95720783 95720783 C T PIPSL RNA 0.50 TCGA-EE-A29L-06 10 96447642 96447642 C T CYP2C18 Missense_Mutation p.S95F 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29L-06 10 96493179 96493179 C T CYP2C18 Silent p.F425F 0.38 TCGA-EE-A29L-06 10 96609702 96609702 C T CYP2C19 Missense_Mutation p.S393F 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 10 96698552 96698552 T C CYP2C9 Missense_Mutation p.V38A 0.49 deleterious(0) benign(0.256) TCGA-EE-A29L-06 10 96698566 96698566 C T CYP2C9 Silent p.L43L 0.37 TCGA-EE-A29L-06 10 96701948 96701948 G A CYP2C9 Splice_Site p.X111_splice 0.54 TCGA-EE-A29L-06 10 96707649 96707649 G A CYP2C9 Missense_Mutation p.E199K 0.50 tolerated(0.63) benign(0.004) TCGA-EE-A29L-06 10 96824695 96824695 G A CYP2C8 Silent p.F168F 0.27 TCGA-EE-A29L-06 10 98741766 98741766 C T C10orf12 Missense_Mutation p.R207C 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 10 98744594 98744594 C T C10orf12 Silent p.I1149I 0.27 TCGA-EE-A29L-06 10 99025842 99025842 G A ARHGAP19 Missense_Mutation p.L33F 0.38 tolerated_low_confidence(0.72) benign(0.099) TCGA-EE-A29L-06 11 100211914 100211914 G A CNTN5 Missense_Mutation p.E1003K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29L-06 11 101347198 101347198 C T TRPC6 Nonsense_Mutation p.W526* 0.46 TCGA-EE-A29L-06 11 102573820 102573820 C T MMP27 Missense_Mutation p.R124Q 0.56 tolerated(0.43) benign(0.011) TCGA-EE-A29L-06 11 102733896 102733896 C T MMP12 RNA 0.51 TCGA-EE-A29L-06 11 103908105 103908105 G A DDI1 Silent p.E185E 0.42 TCGA-EE-A29L-06 11 108115720 108115720 C T ATM Missense_Mutation p.H290Y 0.22 deleterious(0) possibly_damaging(0.852) TCGA-EE-A29L-06 11 113210067 113210067 G C TTC12 Missense_Mutation p.E233Q 0.35 tolerated(0.27) benign(0.021) TCGA-EE-A29L-06 11 113270750 113270750 G A ANKK1 Missense_Mutation p.A687T 0.55 deleterious(0.02) benign(0.42) TCGA-EE-A29L-06 11 1156224 1156224 G A MUC5AC Silent p.L183L 0.38 TCGA-EE-A29L-06 11 1156647 1156647 G A MUC5AC Missense_Mutation p.E222K 0.45 deleterious(0.02) benign(0.009) TCGA-EE-A29L-06 11 116628539 116628539 C T BUD13 Missense_Mutation p.D543N 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 117105018 117105018 G A RNF214 Silent p.V10V 0.46 TCGA-EE-A29L-06 11 117969729 117969729 C T TMPRSS4 Missense_Mutation p.P25S 0.43 tolerated(0.56) benign(0.002) TCGA-EE-A29L-06 11 118365450 118365450 C T KMT2A Silent p.S1777S 0.36 TCGA-EE-A29L-06 11 119986080 119986080 G A TRIM29 Missense_Mutation p.P557L 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29L-06 11 120175796 120175796 C T POU2F3 Nonsense_Mutation p.Q170* 0.32 TCGA-EE-A29L-06 11 120345286 120345286 A C ARHGEF12 Missense_Mutation p.K1017N 0.48 deleterious(0.02) benign(0.072) TCGA-EE-A29L-06 11 120833374 120833374 G A GRIK4 Silent p.G750G 0.36 TCGA-EE-A29L-06 11 120998562 120998562 C T TECTA Missense_Mutation p.P626S 0.53 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A29L-06 11 121391410 121391410 G A SORL1 Missense_Mutation p.G419E 0.49 deleterious(0) probably_damaging(0.989) TCGA-EE-A29L-06 11 123597480 123597480 G A ZNF202 Missense_Mutation p.P391L 0.60 tolerated(0.07) benign(0.002) TCGA-EE-A29L-06 11 123813676 123813676 G A OR6T1 Silent p.F290F 0.40 TCGA-EE-A29L-06 11 124012423 124012423 A G VWA5A Missense_Mutation p.I666M 0.52 tolerated(0.38) benign(0.002) TCGA-EE-A29L-06 11 124180576 124180576 G A OR8D1 Silent p.L29L 0.31 TCGA-EE-A29L-06 11 124189886 124189886 C T OR8D2 Missense_Mutation p.D70N 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 11 124310965 124310965 G A OR8B8 Missense_Mutation p.S6F 0.54 tolerated_low_confidence(0.64) benign(0.021) TCGA-EE-A29L-06 11 125301156 125301156 G A PKNOX2 Silent p.L429L 0.35 TCGA-EE-A29L-06 11 126073221 126073221 G A RPUSD4 3'UTR 0.62 TCGA-EE-A29L-06 11 128840323 128840323 C T ARHGAP32 Silent p.R1581R 0.52 TCGA-EE-A29L-06 11 128840324 128840324 C T ARHGAP32 Missense_Mutation p.R1581Q 0.54 deleterious(0) probably_damaging(0.99) TCGA-EE-A29L-06 11 129306793 129306793 G A BARX2 Missense_Mutation p.G112E 0.43 deleterious(0.02) benign(0.319) TCGA-EE-A29L-06 11 129306851 129306851 G A BARX2 Silent p.K131K 0.47 TCGA-EE-A29L-06 11 129751382 129751382 G A NFRKB Missense_Mutation p.P472L 0.43 deleterious(0) unknown(0) TCGA-EE-A29L-06 11 129756218 129756218 G A NFRKB Silent p.S166S 0.47 TCGA-EE-A29L-06 11 129814708 129814708 G A PRDM10 Silent p.L240L 0.36 TCGA-EE-A29L-06 11 130275642 130275642 G A ADAMTS8 Silent p.I827I 0.43 TCGA-EE-A29L-06 11 130275995 130275995 G A ADAMTS8 Missense_Mutation p.P710S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 13387074 13387074 G A ARNTL Missense_Mutation p.G163R 0.48 tolerated(0.06) probably_damaging(0.947) TCGA-EE-A29L-06 11 13387075 13387075 G A ARNTL Missense_Mutation p.G163E 0.48 deleterious(0) possibly_damaging(0.879) TCGA-EE-A29L-06 11 134228965 134228965 C T GLB1L2 Silent p.D221D 0.39 TCGA-EE-A29L-06 11 15197305 15197305 G A INSC Silent p.V72V 0.16 TCGA-EE-A29L-06 11 15212315 15212315 C T INSC Silent p.F263F 0.45 TCGA-EE-A29L-06 11 1642939 1642939 C T KRTAP5-4 Missense_Mutation p.G129R 0.47 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29L-06 11 17418804 17418804 C T ABCC8 Silent p.L1308L 0.42 TCGA-EE-A29L-06 11 17452451 17452451 G A ABCC8 Missense_Mutation p.A576V 0.44 deleterious(0) possibly_damaging(0.741) TCGA-EE-A29L-06 11 17531327 17531327 C T USH1C Missense_Mutation p.R530K 0.39 tolerated_low_confidence(0.16) benign(0.085) TCGA-EE-A29L-06 11 17531344 17531344 G A USH1C Silent p.P524P 0.52 TCGA-EE-A29L-06 11 18269491 18269491 G A SAA2 Missense_Mutation p.S23L 0.44 deleterious(0.04) benign(0.245) TCGA-EE-A29L-06 11 1858068 1858068 G A SYT8 Missense_Mutation p.R270Q 0.50 tolerated(0.07) benign(0.124) TCGA-EE-A29L-06 11 19246210 19246210 G A E2F8 Missense_Mutation p.H867Y 0.42 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A29L-06 11 22276938 22276938 G A ANO5 Nonsense_Mutation p.W401* 0.43 TCGA-EE-A29L-06 11 2424683 2424683 C T TSSC4 Missense_Mutation p.H274Y 0.47 tolerated(0.11) benign(0.122) TCGA-EE-A29L-06 11 30255173 30255173 G A FSHB Silent p.K72K 0.53 TCGA-EE-A29L-06 11 40137564 40137564 C T LRRC4C Silent p.V93V 0.47 TCGA-EE-A29L-06 11 4566771 4566771 C T OR52M1 Silent p.F117F 0.54 TCGA-EE-A29L-06 11 47203992 47203992 G A PACSIN3 Missense_Mutation p.A58V 0.42 deleterious(0.04) benign(0.188) TCGA-EE-A29L-06 11 47711717 47711717 G A AGBL2 Silent p.S514S 0.36 TCGA-EE-A29L-06 11 47862106 47862106 C T NUP160 Missense_Mutation p.E117K 0.50 tolerated(0.09) benign(0.098) TCGA-EE-A29L-06 11 48266932 48266932 C T OR4X2 Missense_Mutation p.L93F 0.33 deleterious(0.02) benign(0.043) TCGA-EE-A29L-06 11 48267404 48267404 C T OR4X2 Missense_Mutation p.S250F 0.28 deleterious(0.01) benign(0.001) TCGA-EE-A29L-06 11 48285953 48285953 C T OR4X1 Missense_Mutation p.P181S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 49175808 49175808 C T FOLH1 Silent p.Q620Q 0.37 TCGA-EE-A29L-06 11 4936407 4936407 G A OR51G2 Missense_Mutation p.P163S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 5080082 5080082 G A OR52E2 Missense_Mutation p.S259F 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 5172912 5172912 G A OR52A1 Missense_Mutation p.R230C 0.37 deleterious(0.03) benign(0.052) TCGA-EE-A29L-06 11 5221178 5221178 G A OR51V1 Silent p.I251I 0.42 TCGA-EE-A29L-06 11 5462682 5462682 C T OR51I1 Silent p.G21G 0.58 TCGA-EE-A29L-06 11 55136139 55136139 G A OR4A15 Silent p.G260G 0.59 TCGA-EE-A29L-06 11 55371061 55371061 G A OR4C11 Silent p.F263F 0.86 TCGA-EE-A29L-06 11 55579002 55579002 C T OR5L1 Silent p.V20V 0.47 TCGA-EE-A29L-06 11 55579799 55579799 A G OR5L1 Missense_Mutation p.N286S 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 11 55606658 55606658 C T OR5D16 Missense_Mutation p.A144V 0.55 tolerated(0.36) benign(0.02) TCGA-EE-A29L-06 11 56128056 56128056 G A OR8J1 Missense_Mutation p.V112I 0.50 tolerated(0.51) benign(0.004) TCGA-EE-A29L-06 11 56128572 56128572 C T OR8J1 Missense_Mutation p.P284S 0.35 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A29L-06 11 56185304 56185304 C T OR5R1 Silent p.L135L 0.43 TCGA-EE-A29L-06 11 56258211 56258211 G A OR5M8 Silent p.I212I 0.30 TCGA-EE-A29L-06 11 56258650 56258650 G A OR5M8 Missense_Mutation p.S66F 0.39 deleterious(0.02) benign(0.114) TCGA-EE-A29L-06 11 5655033 5655033 G A TRIM34 Splice_Site p.X142_splice 0.58 TCGA-EE-A29L-06 11 58034869 58034869 G A OR10W1 Silent p.I154I 0.60 TCGA-EE-A29L-06 11 58723084 58723084 G A GLYATL1 Missense_Mutation p.E196K 0.43 tolerated(0.47) benign(0.039) TCGA-EE-A29L-06 11 59481031 59481031 C T OR10V1 Silent p.T96T 0.56 TCGA-EE-A29L-06 11 60889213 60889213 G A CD5 Nonsense_Mutation p.W312* 0.37 TCGA-EE-A29L-06 11 60889214 60889214 G A CD5 Missense_Mutation p.E313K 0.35 tolerated(0.12) benign(0.416) TCGA-EE-A29L-06 11 61070583 61070583 G A DDB1 Silent p.I959I 0.44 TCGA-EE-A29L-06 11 61645658 61645658 G A FADS3 Silent p.P259P 0.46 TCGA-EE-A29L-06 11 62414849 62414849 G A INTS5 Silent p.P901P 0.47 TCGA-EE-A29L-06 11 62747342 62747342 C T SLC22A6 Silent p.V372V 0.52 TCGA-EE-A29L-06 11 62932071 62932071 C T SLC22A25 Missense_Mutation p.G441S 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 11 63149660 63149660 G A SLC22A9 Silent p.L328L 0.38 TCGA-EE-A29L-06 11 63682238 63682238 G A RCOR2 Silent p.A123A 0.37 TCGA-EE-A29L-06 11 63885213 63885213 T C FLRT1 Missense_Mutation p.Y492H 0.48 deleterious(0.02) possibly_damaging(0.784) TCGA-EE-A29L-06 11 63997276 63997276 G A NUDT22 Intron 0.72 TCGA-EE-A29L-06 11 64108578 64108578 C T CCDC88B Intron 0.46 TCGA-EE-A29L-06 11 64111792 64111792 C T CCDC88B Silent p.G593G 0.45 TCGA-EE-A29L-06 11 6458377 6458377 C T HPX Missense_Mutation p.G245E 0.50 tolerated(0.06) benign(0.06) TCGA-EE-A29L-06 11 64681835 64681835 G A ATG2A Silent p.L103L 0.50 TCGA-EE-A29L-06 11 65367011 65367011 G A MAP3K11 Missense_Mutation p.P687L 0.54 tolerated_low_confidence(0.32) benign(0.008) TCGA-EE-A29L-06 11 6650991 6650991 G A DCHS1 Silent p.F1649F 0.45 TCGA-EE-A29L-06 11 67077398 67077398 C T SSH3 Silent p.F456F 0.44 TCGA-EE-A29L-06 11 67287409 67287409 G A CABP2 Silent p.F164F 0.37 TCGA-EE-A29L-06 11 67434479 67434479 G A ALDH3B2 5'UTR 0.53 TCGA-EE-A29L-06 11 68341637 68341637 C T PPP6R3 Silent p.I468I 0.44 TCGA-EE-A29L-06 11 70506017 70506017 G A SHANK2 Silent p.F660F 0.53 TCGA-EE-A29L-06 11 71152291 71152291 G A DHCR7 Missense_Mutation p.P203L 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 11 722701 722701 C T EPS8L2 Missense_Mutation p.P413S 0.33 deleterious(0.01) benign(0.056) TCGA-EE-A29L-06 11 72404832 72404832 G A ARAP1 Missense_Mutation p.A1238V 0.53 deleterious(0.02) benign(0.164) TCGA-EE-A29L-06 11 73676029 73676029 C T DNAJB13 Silent p.S147S 0.32 TCGA-EE-A29L-06 11 7672110 7672110 C T PPFIBP2 Missense_Mutation p.H721Y 0.49 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 11 76823638 76823646 ATCCCAGAC TACCAAGAA CAPN5 Missense_Mutation p.IPD101YQE 0.09 TCGA-EE-A29L-06 11 78419499 78419499 G A TENM4 Silent p.I1372I 0.48 TCGA-EE-A29L-06 11 7950003 7950003 C T OR10A6 Silent p.V69V 0.41 TCGA-EE-A29L-06 11 8008845 8008845 C T EIF3F 5'UTR 0.38 TCGA-EE-A29L-06 11 8118838 8118838 C T TUB Missense_Mutation p.L306F 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29L-06 11 82625887 82625887 C T C11orf82 Missense_Mutation p.S36F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 11 83344302 83344302 G A DLG2 Missense_Mutation p.S631F 0.32 deleterious(0.01) possibly_damaging(0.733) TCGA-EE-A29L-06 11 85597391 85597391 G A CCDC83 Silent p.E164E 0.38 TCGA-EE-A29L-06 11 89135579 89135579 C T NOX4 Missense_Mutation p.G254E 0.44 tolerated(1) benign(0.003) TCGA-EE-A29L-06 11 89774595 89774595 C T TRIM49C Silent p.F412F 0.22 TCGA-EE-A29L-06 11 92086899 92086899 G A FAT3 Missense_Mutation p.E541K 0.48 probably_damaging(0.932) TCGA-EE-A29L-06 11 92533807 92533807 G A FAT3 Missense_Mutation p.R2543Q 0.41 benign(0.107) TCGA-EE-A29L-06 11 93826760 93826760 G A HEPHL1 Silent p.V796V 0.46 TCGA-EE-A29L-06 11 93837822 93837822 C T HEPHL1 Silent p.S937S 0.51 TCGA-EE-A29L-06 11 93911716 93911716 G A PANX1 Missense_Mutation p.G168E 0.46 tolerated(0.18) possibly_damaging(0.589) TCGA-EE-A29L-06 12 100043168 100043168 G A FAM71C Missense_Mutation p.E240K 0.26 deleterious_low_confidence(0) benign(0.043) TCGA-EE-A29L-06 12 101005900 101005900 C T GAS2L3 Silent p.L142L 0.26 TCGA-EE-A29L-06 12 101295595 101295595 G A ANO4 Missense_Mutation p.G11E 0.69 tolerated_low_confidence(0.13) benign(0.017) TCGA-EE-A29L-06 12 101685850 101685850 C T UTP20 Missense_Mutation p.P381S 0.26 deleterious(0.03) probably_damaging(0.96) TCGA-EE-A29L-06 12 102315169 102315169 C T DRAM1 3'UTR 0.67 TCGA-EE-A29L-06 12 103984744 103984744 G A STAB2 Missense_Mutation p.G51R 0.61 tolerated(0.49) benign(0.002) TCGA-EE-A29L-06 12 104171831 104171831 G T NT5DC3 Missense_Mutation p.Q475K 0.24 deleterious(0.01) possibly_damaging(0.595) TCGA-EE-A29L-06 12 105150977 105150977 C T CHST11 Missense_Mutation p.A152V 0.15 tolerated(0.09) probably_damaging(0.952) TCGA-EE-A29L-06 12 105322023 105322023 G A SLC41A2 Missense_Mutation p.H95Y 0.31 tolerated(0.29) benign(0.115) TCGA-EE-A29L-06 12 105520946 105520946 C T KIAA1033 Missense_Mutation p.P360S 0.63 tolerated(0.21) possibly_damaging(0.502) TCGA-EE-A29L-06 12 106460902 106460902 C T NUAK1 Missense_Mutation p.G555D 0.61 tolerated(0.64) benign(0.19) TCGA-EE-A29L-06 12 108008863 108008863 C T BTBD11 Missense_Mutation p.P642L 0.22 deleterious(0) probably_damaging(0.934) TCGA-EE-A29L-06 12 109051152 109051152 G A CORO1C Silent p.F226F 0.26 TCGA-EE-A29L-06 12 109527987 109527987 G A ALKBH2 Silent p.F102F 0.59 TCGA-EE-A29L-06 12 10962038 10962038 G A TAS2R9 Nonsense_Mutation p.R213* 0.86 TCGA-EE-A29L-06 12 109639469 109639469 C T ACACB Missense_Mutation p.A959V 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29L-06 12 109639470 109639470 C A ACACB Silent p.A959A 0.54 TCGA-EE-A29L-06 12 109694020 109694020 C T ACACB Missense_Mutation p.T2081I 0.11 deleterious(0) possibly_damaging(0.86) TCGA-EE-A29L-06 12 109694021 109694021 C T ACACB Silent p.T2081T 0.11 TCGA-EE-A29L-06 12 109834264 109834264 G A MYO1H Silent p.E106E 0.33 TCGA-EE-A29L-06 12 111342572 111342572 C T CCDC63 Missense_Mutation p.P508L 0.20 tolerated(0.08) benign(0.216) TCGA-EE-A29L-06 12 112622558 112622558 G A HECTD4 Silent p.I3258I 0.29 TCGA-EE-A29L-06 12 113306309 113306309 G A RPH3A Silent p.K173K 0.33 TCGA-EE-A29L-06 12 113543663 113543663 G A RASAL1 Silent p.F563F 0.26 TCGA-EE-A29L-06 12 113629232 113629232 C T RITA1 Silent p.L140L 0.24 TCGA-EE-A29L-06 12 113729446 113729446 C T TPCN1 Silent p.S736S 0.25 TCGA-EE-A29L-06 12 114793644 114793644 G A TBX5 Missense_Mutation p.P417L 0.35 deleterious(0) possibly_damaging(0.543) TCGA-EE-A29L-06 12 114836398 114836398 G A TBX5 Missense_Mutation p.H164Y 0.31 tolerated(0.2) possibly_damaging(0.49) TCGA-EE-A29L-06 12 117465961 117465961 C T FBXW8 Missense_Mutation p.P594L 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 117657984 117657984 C T NOS1 Missense_Mutation p.D1390N 0.29 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29L-06 12 117723924 117723924 C T NOS1 Silent p.Q425Q 0.23 TCGA-EE-A29L-06 12 120536901 120536901 G A RAB35 Silent p.S95S 0.22 TCGA-EE-A29L-06 12 120536902 120536902 G A RAB35 Missense_Mutation p.S95F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 122496996 122496996 A G BCL7A Splice_Site p.X209_splice 0.48 TCGA-EE-A29L-06 12 122658458 122658458 C T IL31 Missense_Mutation p.R33Q 0.64 tolerated(1) benign(0) TCGA-EE-A29L-06 12 122748207 122748207 G A VPS33A Missense_Mutation p.R70C 0.31 tolerated(0.17) benign(0.035) TCGA-EE-A29L-06 12 123687382 123687382 G A MPHOSPH9 Nonsense_Mutation p.Q372* 0.35 TCGA-EE-A29L-06 12 123950399 123950399 C G SNRNP35 Silent p.A109A 0.63 TCGA-EE-A29L-06 12 124163773 124163773 C T TCTN2 Silent p.P167P 0.33 TCGA-EE-A29L-06 12 124333331 124333331 G A DNAH10 Missense_Mutation p.D1884N 0.29 probably_damaging(1) TCGA-EE-A29L-06 12 124335526 124335526 C T DNAH10 Missense_Mutation p.S1947L 0.27 probably_damaging(0.97) TCGA-EE-A29L-06 12 124399401 124399401 G A DNAH10 Nonsense_Mutation p.W3408* 0.24 TCGA-EE-A29L-06 12 124835140 124835140 G A NCOR2 Silent p.S1279S 0.24 TCGA-EE-A29L-06 12 126138844 126138844 C T TMEM132B Missense_Mutation p.S942F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 12 126138962 126138962 G A TMEM132B Silent p.R981R 0.32 TCGA-EE-A29L-06 12 129569296 129569296 C T TMEM132D Intron 0.44 TCGA-EE-A29L-06 12 13061549 13061549 C T GPRC5A Silent p.L122L 0.21 TCGA-EE-A29L-06 12 131490580 131490580 C T GPR133 Missense_Mutation p.P440L 0.17 deleterious(0.05) benign(0.224) TCGA-EE-A29L-06 12 132546845 132546845 C T EP400 Missense_Mutation p.S2692F 0.32 possibly_damaging(0.683) TCGA-EE-A29L-06 12 133353292 133353292 G A GOLGA3 Silent p.S1302S 0.23 TCGA-EE-A29L-06 12 13717390 13717390 C T GRIN2B Missense_Mutation p.E928K 0.62 tolerated(0.62) possibly_damaging(0.794) TCGA-EE-A29L-06 12 13828756 13828756 A T GRIN2B Missense_Mutation p.S350T 0.40 deleterious(0) probably_damaging(0.971) TCGA-EE-A29L-06 12 14019004 14019004 C T GRIN2B Missense_Mutation p.E47K 0.14 deleterious(0.04) benign(0.163) TCGA-EE-A29L-06 12 14822671 14822671 C T GUCY2C Missense_Mutation p.D423N 0.29 deleterious(0.02) benign(0.259) TCGA-EE-A29L-06 12 15261989 15261989 G A RERG 3'UTR 0.35 TCGA-EE-A29L-06 12 18891712 18891712 G A CAPZA3 Nonsense_Mutation p.W170* 0.62 TCGA-EE-A29L-06 12 20858930 20858930 C T SLCO1C1 Missense_Mutation p.H107Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 12 21684140 21684140 G A C12orf39 3'UTR 0.60 TCGA-EE-A29L-06 12 2224609 2224609 A G CACNA1C Missense_Mutation p.K90R 0.34 tolerated(0.13) benign(0.44) TCGA-EE-A29L-06 12 250284 250284 C T IQSEC3 Intron 0.37 TCGA-EE-A29L-06 12 28116390 28116390 T C PTHLH Missense_Mutation p.K139E 0.26 deleterious(0.01) possibly_damaging(0.619) TCGA-EE-A29L-06 12 30787023 30787023 G A IPO8 Silent p.L965L 0.19 TCGA-EE-A29L-06 12 30833521 30833521 G A IPO8 Silent p.F178F 0.28 TCGA-EE-A29L-06 12 30881844 30881844 G A CAPRIN2 Missense_Mutation p.P507L 0.60 tolerated_low_confidence(0.06) probably_damaging(0.977) TCGA-EE-A29L-06 12 32134418 32134418 C T KIAA1551 Missense_Mutation p.P177S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 33535294 33535294 C T SYT10 Missense_Mutation p.D454N 0.51 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 12 41966780 41966780 G A PDZRN4 Silent p.K733K 0.26 TCGA-EE-A29L-06 12 43826237 43826237 C T ADAMTS20 Missense_Mutation p.R989Q 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 43826539 43826539 C T ADAMTS20 Missense_Mutation p.M932I 0.30 tolerated(0.54) benign(0.011) TCGA-EE-A29L-06 12 43846459 43846459 C T ADAMTS20 Missense_Mutation p.M600I 0.69 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29L-06 12 4768259 4768259 C T NDUFA9 Silent p.S156S 0.44 TCGA-EE-A29L-06 12 4855377 4855377 G A GALNT8 Missense_Mutation p.G376S 0.29 tolerated(0.27) benign(0.09) TCGA-EE-A29L-06 12 48877038 48877038 C T C12orf54 5'UTR 0.73 TCGA-EE-A29L-06 12 48963728 48963728 C T LALBA Missense_Mutation p.E26K 0.67 deleterious(0.05) benign(0.1) TCGA-EE-A29L-06 12 49050495 49050495 G A KANSL2 Intron 0.26 TCGA-EE-A29L-06 12 49315121 49315121 G A CCDC65 Silent p.L450L 0.36 TCGA-EE-A29L-06 12 49334959 49334959 G A ARF3 5'UTR 0.39 TCGA-EE-A29L-06 12 49360220 49360220 C T WNT10B Silent p.R276R 0.60 TCGA-EE-A29L-06 12 49392058 49392058 G A DDN Missense_Mutation p.P201S 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29L-06 12 49392059 49392059 G A DDN Silent p.P200P 0.26 TCGA-EE-A29L-06 12 49397341 49397341 G A PRKAG1 Silent p.I256I 0.17 TCGA-EE-A29L-06 12 49397357 49397357 G A PRKAG1 Missense_Mutation p.S251F 0.20 deleterious(0) probably_damaging(0.968) TCGA-EE-A29L-06 12 49432453 49432453 G A KMT2D Missense_Mutation p.P2896S 0.35 benign(0.444) TCGA-EE-A29L-06 12 5020775 5020775 G A KCNA1 Silent p.R77R 0.33 TCGA-EE-A29L-06 12 50264278 50264278 G A FAIM2 3'UTR 0.24 TCGA-EE-A29L-06 12 50291358 50291358 G A FAIM2 Silent p.T108T 0.23 TCGA-EE-A29L-06 12 50500608 50500608 G A GPD1 Missense_Mutation p.G174R 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29L-06 12 50594751 50594751 G A LIMA1 Intron 0.40 TCGA-EE-A29L-06 12 5154166 5154166 C G KCNA5 Missense_Mutation p.P285A 0.35 tolerated(0.29) benign(0.003) TCGA-EE-A29L-06 12 5154222 5154222 C T KCNA5 Silent p.V303V 0.61 TCGA-EE-A29L-06 12 5155047 5155047 G A KCNA5 Silent p.R578R 0.36 TCGA-EE-A29L-06 12 5155048 5155048 G A KCNA5 Missense_Mutation p.G579S 0.36 tolerated_low_confidence(0.2) possibly_damaging(0.747) TCGA-EE-A29L-06 12 51733658 51733658 G A CELA1 Missense_Mutation p.R199C 0.21 tolerated(0.07) benign(0.074) TCGA-EE-A29L-06 12 51863538 51863538 G A SLC4A8 Missense_Mutation p.G497E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 51863539 51863539 G A SLC4A8 Silent p.G497G 0.26 TCGA-EE-A29L-06 12 51891003 51891003 G A SLC4A8 Intron 0.43 TCGA-EE-A29L-06 12 51901391 51901391 G A SLC4A8 3'UTR 0.29 TCGA-EE-A29L-06 12 52714916 52714916 G A KRT83 Silent p.F68F 0.38 TCGA-EE-A29L-06 12 52794341 52794341 C G KRT82 Missense_Mutation p.E249D 0.24 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A29L-06 12 52881884 52881884 C T KRT6A Silent p.L476L 0.33 TCGA-EE-A29L-06 12 52913943 52913943 G A KRT5 Silent p.F46F 0.35 TCGA-EE-A29L-06 12 52943863 52943863 C T KRT71 Silent p.L202L 0.56 TCGA-EE-A29L-06 12 53042018 53042018 G A KRT2 Missense_Mutation p.A354V 0.30 deleterious(0.03) possibly_damaging(0.882) TCGA-EE-A29L-06 12 53708084 53708084 G A AAAS Silent p.T229T 0.29 TCGA-EE-A29L-06 12 54366968 54366968 C T HOXC11 5'UTR 0.28 TCGA-EE-A29L-06 12 54799118 54799118 G A ITGA5 Missense_Mutation p.R353W 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29L-06 12 54856450 54856450 G A GTSF1 Missense_Mutation p.P102S 0.33 deleterious(0.01) benign(0.05) TCGA-EE-A29L-06 12 54968987 54968987 G A PDE1B Silent p.E390E 0.27 TCGA-EE-A29L-06 12 55725853 55725853 C T OR6C3 Silent p.I123I 0.64 TCGA-EE-A29L-06 12 55759806 55759806 G A OR6C75 Silent p.Q304Q 0.18 TCGA-EE-A29L-06 12 55820117 55820117 C T OR6C76 Missense_Mutation p.S27L 0.25 tolerated_low_confidence(0.97) benign(0.001) TCGA-EE-A29L-06 12 55820232 55820232 C T OR6C76 Silent p.S65S 0.67 TCGA-EE-A29L-06 12 55846191 55846191 C T OR6C2 Missense_Mutation p.S65F 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-EE-A29L-06 12 56755102 56755102 G A APOF Silent p.F296F 0.24 TCGA-EE-A29L-06 12 56847452 56847452 C T MIP Missense_Mutation p.D150N 0.30 deleterious(0.02) probably_damaging(1) TCGA-EE-A29L-06 12 56848292 56848292 G A MIP Missense_Mutation p.P36S 0.31 tolerated(1) benign(0.081) TCGA-EE-A29L-06 12 57594821 57594821 C T LRP1 Silent p.I3410I 0.30 TCGA-EE-A29L-06 12 58009017 58009017 C T ARHGEF25 Intron 0.41 TCGA-EE-A29L-06 12 59271441 59271441 G A LRIG3 Silent p.V759V 0.63 TCGA-EE-A29L-06 12 6094283 6094283 G A VWF Missense_Mutation p.P2302S 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A29L-06 12 63225927 63225927 G A PPM1H Silent p.P126P 0.71 TCGA-EE-A29L-06 12 64609701 64609701 A T C12orf66 Missense_Mutation p.I93N 0.28 tolerated(0.36) benign(0.011) TCGA-EE-A29L-06 12 6499962 6499962 C T LTBR Silent p.P389P 0.37 TCGA-EE-A29L-06 12 6562689 6562689 C T TAPBPL Silent p.I124I 0.67 TCGA-EE-A29L-06 12 6710877 6710877 T A CHD4 Missense_Mutation p.H165L 0.27 tolerated(0.39) possibly_damaging(0.803) TCGA-EE-A29L-06 12 674588 674588 G A NINJ2 Intron 0.25 TCGA-EE-A29L-06 12 675180 675180 C T NINJ2 Silent p.L112L 0.21 TCGA-EE-A29L-06 12 6760273 6760273 A G ING4 3'UTR 0.42 TCGA-EE-A29L-06 12 70088168 70088168 G A BEST3 Missense_Mutation p.P77S 0.54 deleterious(0) probably_damaging(0.994) TCGA-EE-A29L-06 12 70954661 70954661 G A PTPRB Missense_Mutation p.L1408F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 12 70988398 70988398 C T PTPRB Missense_Mutation p.M455I 0.27 tolerated(0.37) benign(0.003) TCGA-EE-A29L-06 12 71029509 71029509 C T PTPRB Missense_Mutation p.M131I 0.26 deleterious_low_confidence(0.02) benign(0.444) TCGA-EE-A29L-06 12 71946912 71946912 C T LGR5 Missense_Mutation p.S163F 0.28 tolerated(0.08) probably_damaging(0.972) TCGA-EE-A29L-06 12 72316796 72316796 C T TBC1D15 Missense_Mutation p.L630F 0.30 tolerated(0.09) benign(0.007) TCGA-EE-A29L-06 12 7459334 7459334 G A ACSM4 Missense_Mutation p.R136Q 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29L-06 12 7531888 7531888 G A CD163L1 Missense_Mutation p.S686L 0.55 deleterious(0.03) probably_damaging(0.941) TCGA-EE-A29L-06 12 7559178 7559178 G A CD163L1 Missense_Mutation p.T346I 0.21 tolerated(0.61) benign(0.151) TCGA-EE-A29L-06 12 7559179 7559179 T A CD163L1 Missense_Mutation p.T346S 0.21 tolerated(0.7) benign(0.005) TCGA-EE-A29L-06 12 7653826 7653826 C T CD163 Silent p.G122G 0.61 TCGA-EE-A29L-06 12 7842921 7842921 A G GDF3 Silent p.F216F 0.25 TCGA-EE-A29L-06 12 79693175 79693175 G A SYT1 Silent p.S218S 0.31 TCGA-EE-A29L-06 12 7980222 7980222 C T SLC2A14 Missense_Mutation p.D268N 0.24 tolerated(0.18) benign(0.01) TCGA-EE-A29L-06 12 80266638 80266638 G A PPP1R12A Silent p.G106G 0.23 TCGA-EE-A29L-06 12 8048091 8048091 C T NANOGP1 RNA 0.22 TCGA-EE-A29L-06 12 8048092 8048092 C T NANOGP1 RNA 0.23 TCGA-EE-A29L-06 12 80746107 80746107 G A OTOGL Nonsense_Mutation p.W1757* 0.19 TCGA-EE-A29L-06 12 80750274 80750274 T C OTOGL Missense_Mutation p.L1953P 0.26 tolerated(0.17) possibly_damaging(0.778) TCGA-EE-A29L-06 12 81239607 81239607 T A LIN7A Missense_Mutation p.N129Y 0.23 deleterious(0) probably_damaging(0.973) TCGA-EE-A29L-06 12 81545701 81545701 G A ACSS3 Missense_Mutation p.E334K 0.70 deleterious(0) benign(0.086) TCGA-EE-A29L-06 12 81627164 81627164 G T ACSS3 Nonsense_Mutation p.E545* 0.41 TCGA-EE-A29L-06 12 81647101 81647101 G A ACSS3 Missense_Mutation p.G579S 0.62 tolerated(0.12) benign(0.012) TCGA-EE-A29L-06 12 81688756 81688756 C T PPFIA2 Missense_Mutation p.G928D 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 12 81747075 81747075 A C PPFIA2 Missense_Mutation p.I606S 0.27 tolerated(0.11) benign(0.001) TCGA-EE-A29L-06 12 81751897 81751897 C T PPFIA2 Silent p.R579R 0.45 TCGA-EE-A29L-06 12 8327901 8327901 C T ZNF705A Missense_Mutation p.L73F 0.44 tolerated(0.28) benign(0.336) TCGA-EE-A29L-06 12 8374907 8374907 C T FAM90A1 Silent p.L302L 0.11 TCGA-EE-A29L-06 12 85521762 85521762 A T LRRIQ1 Missense_Mutation p.N1387I 0.55 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A29L-06 12 8666216 8666216 C T CLEC4D 5'UTR 0.30 TCGA-EE-A29L-06 12 8671697 8671697 G A CLEC4D Missense_Mutation p.E109K 0.46 deleterious(0.03) benign(0.257) TCGA-EE-A29L-06 12 8687247 8687247 C T CLEC4E Missense_Mutation p.G216E 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A29L-06 12 88482980 88482980 G A CEP290 Silent p.F1286F 0.26 TCGA-EE-A29L-06 12 8976394 8976394 G A A2ML1 Missense_Mutation p.E109K 0.30 tolerated(0.11) benign(0.17) TCGA-EE-A29L-06 12 91449601 91449601 T C KERA Missense_Mutation p.K153R 0.56 tolerated(0.62) benign(0.006) TCGA-EE-A29L-06 12 91572209 91572209 G A DCN Missense_Mutation p.P41S 0.57 deleterious(0.04) benign(0.004) TCGA-EE-A29L-06 12 9333697 9333697 G A PZP Missense_Mutation p.P574L 0.54 tolerated(1) benign(0) TCGA-EE-A29L-06 12 9345244 9345244 G A PZP Missense_Mutation p.S449F 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29L-06 12 95887837 95887837 C G METAP2 Missense_Mutation p.T145R 0.59 tolerated(0.09) benign(0.247) TCGA-EE-A29L-06 12 97043759 97043759 C T C12orf55 Missense_Mutation p.S1594L 0.65 tolerated(0.73) benign(0.009) TCGA-EE-A29L-06 12 97137855 97137855 C T C12orf55 Missense_Mutation p.P2539S 0.38 deleterious(0.03) benign(0) TCGA-EE-A29L-06 12 977653 977653 G T WNK1 Intron 0.12 TCGA-EE-A29L-06 12 9997066 9997066 G A KLRF1 Missense_Mutation p.E214K 0.81 tolerated(0.71) benign(0.004) TCGA-EE-A29L-06 13 108881849 108881849 G A ABHD13 Missense_Mutation p.D95N 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29L-06 13 111090369 111090369 G A COL4A2 Silent p.G282G 0.94 TCGA-EE-A29L-06 13 111995208 111995208 G A TEX29 Silent p.G115G 0.98 TCGA-EE-A29L-06 13 114502317 114502317 G A TMEM255B Silent p.P116P 0.19 TCGA-EE-A29L-06 13 20346608 20346608 G A PSPC1 Missense_Mutation p.R150C 0.38 deleterious(0.02) benign(0.348) TCGA-EE-A29L-06 13 20716813 20716813 G A GJA3 Silent p.I205I 0.39 TCGA-EE-A29L-06 13 21562189 21562189 G A LATS2 Missense_Mutation p.P577L 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 13 25280559 25280559 C T ATP12A Silent p.S715S 1.00 TCGA-EE-A29L-06 13 25356014 25356014 G A RNF17 Silent p.E181E 0.46 TCGA-EE-A29L-06 13 25439062 25439062 G A RNF17 Missense_Mutation p.G1343R 0.55 deleterious(0) probably_damaging(0.979) TCGA-EE-A29L-06 13 29008336 29008336 G A FLT1 Missense_Mutation p.P179S 0.39 deleterious(0.02) benign(0.364) TCGA-EE-A29L-06 13 31540496 31540496 G A TEX26 Missense_Mutation p.G203R 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A29L-06 13 41949637 41949637 C T NAA16 Missense_Mutation p.P832S 0.48 deleterious(0) probably_damaging(0.963) TCGA-EE-A29L-06 13 52520510 52520510 G A ATP7B Silent p.A990A 1.00 TCGA-EE-A29L-06 13 52548313 52548313 G A ATP7B Missense_Mutation p.S348F 0.46 tolerated(0.14) benign(0.003) TCGA-EE-A29L-06 13 52676396 52676396 C T NEK5 Silent p.L214L 0.40 TCGA-EE-A29L-06 13 84453508 84453508 G A SLITRK1 3'UTR 0.14 TCGA-EE-A29L-06 13 84453565 84453565 G A SLITRK1 Missense_Mutation p.S693L 0.32 tolerated(0.06) benign(0.009) TCGA-EE-A29L-06 13 95673920 95673920 T C ABCC4 Missense_Mutation p.N1296S 0.26 tolerated(0.44) benign(0.009) TCGA-EE-A29L-06 13 95673930 95673930 A G ABCC4 Missense_Mutation p.F1293L 0.94 tolerated(0.69) benign(0.001) TCGA-EE-A29L-06 14 100820169 100820169 G A WARS Nonsense_Mutation p.Q194* 0.29 TCGA-EE-A29L-06 14 101512826 101512826 C T MIR487B RNA 0.20 TCGA-EE-A29L-06 14 102843242 102843242 C T TECPR2 Missense_Mutation p.R62W 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 14 105207213 105207213 C T ADSSL1 Missense_Mutation p.P251S 0.24 tolerated(0.05) benign(0.038) TCGA-EE-A29L-06 14 105419725 105419725 G A AHNAK2 Missense_Mutation p.S688L 0.72 probably_damaging(0.941) TCGA-EE-A29L-06 14 105420946 105420946 G A AHNAK2 Missense_Mutation p.S281L 0.74 benign(0.214) TCGA-EE-A29L-06 14 105639473 105639473 G A NUDT14 Missense_Mutation p.P185L 0.12 deleterious(0) possibly_damaging(0.815) TCGA-EE-A29L-06 14 106173490 106173490 G A IGHA1 3'UTR 0.39 TCGA-EE-A29L-06 14 106320563 106320563 G A IGHM Missense_Mutation p.A416V 0.29 tolerated(0.06) benign(0.029) TCGA-EE-A29L-06 14 106320691 106320691 G A IGHM Silent p.S373S 0.17 TCGA-EE-A29L-06 14 106331449 106331449 G A IGHJ2 Silent p.F4F 0.19 TCGA-EE-A29L-06 14 106405795 106405795 C T IGHV6-1 Missense_Mutation p.R60K 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 14 106453086 106453086 G A IGHV1-2 Silent p.I7I 0.25 TCGA-EE-A29L-06 14 106539144 106539144 T C IGHV1-8 Missense_Mutation p.S96G 0.73 deleterious(0.01) benign(0.119) TCGA-EE-A29L-06 14 106691916 106691916 G A IGHV3-21 Silent p.S36S 0.24 TCGA-EE-A29L-06 14 107013112 107013112 C T IGHV3-49 Silent p.G61G 0.21 TCGA-EE-A29L-06 14 19378112 19378112 C T OR11H12 Silent p.I173I 0.09 TCGA-EE-A29L-06 14 20248664 20248664 C T OR4M1 Silent p.F61F 0.21 TCGA-EE-A29L-06 14 20249099 20249099 C T OR4M1 Silent p.I206I 0.19 TCGA-EE-A29L-06 14 20249337 20249337 C T OR4M1 Missense_Mutation p.P286S 0.20 deleterious(0.01) possibly_damaging(0.725) TCGA-EE-A29L-06 14 20389615 20389615 C A OR4K5 Missense_Mutation p.P284T 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 14 20612589 20612589 G A OR4N5 Missense_Mutation p.G232E 0.67 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A29L-06 14 20871883 20871883 G A TEP1 Missense_Mutation p.P398L 0.30 deleterious(0.02) possibly_damaging(0.876) TCGA-EE-A29L-06 14 21025085 21025085 C T RNASE9 Silent p.L53L 0.59 TCGA-EE-A29L-06 14 21360433 21360433 C T RNASE3 3'UTR 0.52 TCGA-EE-A29L-06 14 21542517 21542517 C T ARHGEF40 Missense_Mutation p.P210S 0.37 tolerated(0.15) benign(0.003) TCGA-EE-A29L-06 14 21623645 21623645 G A OR5AU1 Silent p.P180P 0.28 TCGA-EE-A29L-06 14 21679350 21679350 A T HNRNPC 3'UTR 0.08 TCGA-EE-A29L-06 14 21871703 21871703 G A CHD8 Missense_Mutation p.P1143S 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 14 22134146 22134146 C T OR4E2 Missense_Mutation p.P284S 0.28 deleterious(0) probably_damaging(0.947) TCGA-EE-A29L-06 14 22205169 22205169 C T TRAV4 Missense_Mutation p.S78F 0.30 tolerated(0.06) possibly_damaging(0.646) TCGA-EE-A29L-06 14 22315350 22315350 G A TRAV8-2 Silent p.T96T 0.26 TCGA-EE-A29L-06 14 22574118 22574118 C T TRAV24 Missense_Mutation p.A113V 0.55 deleterious(0) probably_damaging(0.98) TCGA-EE-A29L-06 14 22636363 22636363 G T TRAV30 Missense_Mutation p.L13F 0.29 benign(0.049) TCGA-EE-A29L-06 14 22965907 22965907 G A TRAJ42 Missense_Mutation p.G13R 0.31 unknown(0) TCGA-EE-A29L-06 14 22989412 22989412 G A TRAJ23 Missense_Mutation p.G7E 0.52 unknown(0) TCGA-EE-A29L-06 14 23586683 23586683 C T CEBPE 3'UTR 0.73 TCGA-EE-A29L-06 14 23826617 23826617 C T EFS Missense_Mutation p.A502T 0.23 tolerated(0.17) benign(0.019) TCGA-EE-A29L-06 14 23855828 23855828 G A MYH6 Missense_Mutation p.S1552F 0.26 deleterious(0.02) possibly_damaging(0.814) TCGA-EE-A29L-06 14 23863047 23863047 G A MYH6 Missense_Mutation p.A919V 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A29L-06 14 23887546 23887546 C T MYH7 Missense_Mutation p.E1348K 0.29 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A29L-06 14 24613200 24613200 G A PSME2 Missense_Mutation p.S179F 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A29L-06 14 24806336 24806336 G A RIPK3 Missense_Mutation p.P411S 0.23 tolerated(0.13) possibly_damaging(0.782) TCGA-EE-A29L-06 14 24839499 24839499 C T NFATC4 Missense_Mutation p.P362S 0.70 tolerated(0.17) benign(0.396) TCGA-EE-A29L-06 14 24877605 24877605 C T NYNRIN Silent p.P243P 0.60 TCGA-EE-A29L-06 14 24879333 24879333 C T NYNRIN Missense_Mutation p.P778L 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29L-06 14 24884964 24884964 C T NYNRIN Missense_Mutation p.P1337S 0.26 deleterious_low_confidence(0.02) benign(0.242) TCGA-EE-A29L-06 14 25443984 25443984 G A STXBP6 Missense_Mutation p.P14L 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A29L-06 14 32142590 32142590 G A NUBPL Missense_Mutation p.G138S 0.20 deleterious(0) possibly_damaging(0.67) TCGA-EE-A29L-06 14 35592424 35592424 C T KIAA0391 5'UTR 0.29 TCGA-EE-A29L-06 14 36300622 36300622 A G BRMS1L Missense_Mutation p.D50G 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29L-06 14 39868916 39868916 G A FBXO33 Missense_Mutation p.T491I 0.30 deleterious(0.03) possibly_damaging(0.717) TCGA-EE-A29L-06 14 47121024 47121024 C T RPL10L 5'UTR 0.25 TCGA-EE-A29L-06 14 47314980 47314980 A G MDGA2 Missense_Mutation p.L993P 0.13 tolerated(0.21) benign(0.001) TCGA-EE-A29L-06 14 58949281 58949281 C T KIAA0586 Missense_Mutation p.P1052S 0.14 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A29L-06 14 60063294 60063294 C T RTN1 3'UTR 0.46 TCGA-EE-A29L-06 14 60076840 60076840 C T RTN1 Intron 0.33 TCGA-EE-A29L-06 14 60194302 60194302 G A RTN1 Missense_Mutation p.S367L 0.17 deleterious(0) benign(0.049) TCGA-EE-A29L-06 14 60620752 60620752 A G DHRS7 Silent p.L106L 0.58 TCGA-EE-A29L-06 14 60903654 60903654 G A C14orf39 Missense_Mutation p.S558L 0.23 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A29L-06 14 61115359 61115359 C T SIX1 Silent p.E183E 0.23 TCGA-EE-A29L-06 14 62463197 62463197 C T SYT16 Missense_Mutation p.L154F 0.23 tolerated(0.19) benign(0.048) TCGA-EE-A29L-06 14 62547804 62547804 G A SYT16 Missense_Mutation p.E416K 0.17 deleterious(0) probably_damaging(0.971) TCGA-EE-A29L-06 14 63447746 63447746 G A KCNH5 Silent p.I262I 0.21 TCGA-EE-A29L-06 14 64461881 64461881 C T SYNE2 Silent p.I967I 0.15 TCGA-EE-A29L-06 14 67525457 67525457 C T GPHN Silent p.V366V 0.23 TCGA-EE-A29L-06 14 68156954 68156954 G A RDH11 Silent p.T213T 0.25 TCGA-EE-A29L-06 14 68265132 68265132 G A ZFYVE26 Missense_Mutation p.P616L 0.27 tolerated(0.09) probably_damaging(0.951) TCGA-EE-A29L-06 14 70461188 70461188 A C SMOC1 Silent p.R219R 0.26 TCGA-EE-A29L-06 14 70634624 70634624 C T SLC8A3 Silent p.G172G 0.16 TCGA-EE-A29L-06 14 72054795 72054795 C T SIPA1L1 Missense_Mutation p.P69L 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 14 72137929 72137929 C T SIPA1L1 Silent p.F783F 0.52 TCGA-EE-A29L-06 14 72152246 72152246 C T SIPA1L1 Missense_Mutation p.S1091L 0.22 tolerated(0.12) benign(0.013) TCGA-EE-A29L-06 14 73029132 73029132 C T RGS6 Missense_Mutation p.S477L 0.18 tolerated(0.08) benign(0.004) TCGA-EE-A29L-06 14 73731413 73731413 C T PAPLN Missense_Mutation p.S1008L 0.25 tolerated(0.35) benign(0.017) TCGA-EE-A29L-06 14 74727351 74727351 G A VSX2 Missense_Mutation p.G272E 0.31 tolerated(1) benign(0.024) TCGA-EE-A29L-06 14 74967682 74967682 C T LTBP2 Missense_Mutation p.G1791S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 14 74978063 74978063 G A LTBP2 Silent p.I971I 0.26 TCGA-EE-A29L-06 14 75747346 75747346 G A FOS Silent p.R159R 0.19 TCGA-EE-A29L-06 14 77919703 77919703 G A VIPAS39 Silent p.F45F 0.23 TCGA-EE-A29L-06 14 79181202 79181202 C T NRXN3 Silent p.N215N 0.63 TCGA-EE-A29L-06 14 81862503 81862503 G A STON2 Silent p.L36L 0.27 TCGA-EE-A29L-06 14 88652155 88652155 G A KCNK10 Silent p.F452F 0.20 TCGA-EE-A29L-06 14 88652317 88652317 G A KCNK10 Silent p.S398S 0.24 TCGA-EE-A29L-06 14 91763744 91763744 G A CCDC88C Silent p.L1291L 0.42 TCGA-EE-A29L-06 14 92088079 92088079 C T CATSPERB Nonsense_Mutation p.W711* 0.21 TCGA-EE-A29L-06 14 92343867 92343867 G A FBLN5 Silent p.I383I 0.24 TCGA-EE-A29L-06 14 92344001 92344001 G A FBLN5 Missense_Mutation p.P339S 0.45 tolerated(0.06) benign(0.002) TCGA-EE-A29L-06 14 93154369 93154369 G A RIN3 Silent p.A910A 0.29 TCGA-EE-A29L-06 14 93154591 93154591 C T RIN3 Silent p.F984F 0.65 TCGA-EE-A29L-06 14 94545680 94545680 G A DDX24 Missense_Mutation p.P137S 0.21 tolerated(0.56) benign(0.004) TCGA-EE-A29L-06 14 95053903 95053903 C T SERPINA5 Silent p.S68S 0.15 TCGA-EE-A29L-06 14 96136862 96136862 C T TCL6 RNA 0.23 TCGA-EE-A29L-06 14 96152929 96152929 C T TCL1B Missense_Mutation p.S42L 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A29L-06 14 96707157 96707157 C T BDKRB2 Silent p.S164S 0.24 TCGA-EE-A29L-06 14 96707829 96707829 G A BDKRB2 Silent p.G388G 0.27 TCGA-EE-A29L-06 15 100332244 100332244 C T AC090825.1 5'Flank 0.23 TCGA-EE-A29L-06 15 100332404 100332404 G A AC090825.1 5'Flank 0.37 TCGA-EE-A29L-06 15 101718740 101718740 T C CHSY1 Missense_Mutation p.K421R 0.40 tolerated(0.94) benign(0.02) TCGA-EE-A29L-06 15 102359018 102359018 C T OR4F15 Missense_Mutation p.S210F 0.24 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-EE-A29L-06 15 22368900 22368900 G A OR4M2 Missense_Mutation p.A109T 0.14 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A29L-06 15 22369419 22369419 C T OR4M2 Missense_Mutation p.P282S 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 15 22382583 22382583 C T OR4N4 Silent p.I37I 0.14 TCGA-EE-A29L-06 15 23889834 23889834 G A MAGEL2 Missense_Mutation p.P416L 0.45 tolerated(0.07) possibly_damaging(0.734) TCGA-EE-A29L-06 15 23890501 23890501 G A MAGEL2 Nonsense_Mutation p.Q194* 0.20 TCGA-EE-A29L-06 15 24922679 24922679 C T NPAP1 Silent p.S555S 0.28 TCGA-EE-A29L-06 15 25287125 25287125 C T SNORD109A RNA 0.59 TCGA-EE-A29L-06 15 25324137 25324137 C T SNORD116-12 3'Flank 0.67 TCGA-EE-A29L-06 15 27271920 27271920 C G GABRG3 Missense_Mutation p.D74E 0.20 tolerated(1) probably_damaging(0.995) TCGA-EE-A29L-06 15 33855043 33855043 C T RYR3 Silent p.L326L 0.47 TCGA-EE-A29L-06 15 33916059 33916059 C T RYR3 Silent p.P803P 0.22 TCGA-EE-A29L-06 15 34445050 34445050 C T KATNBL1 Missense_Mutation p.D127N 0.58 tolerated(0.11) benign(0.279) TCGA-EE-A29L-06 15 35083467 35083467 T G ACTC1 Missense_Mutation p.T280P 0.42 deleterious_low_confidence(0) benign(0.002) TCGA-EE-A29L-06 15 38643461 38643461 T A SPRED1 Missense_Mutation p.F311I 0.75 tolerated(1) benign(0.002) TCGA-EE-A29L-06 15 40093216 40093216 G A GPR176 3'UTR 0.39 TCGA-EE-A29L-06 15 40558353 40558353 G A PAK6 Missense_Mutation p.G172E 0.50 tolerated(0.1) probably_damaging(1) TCGA-EE-A29L-06 15 40589053 40589053 G A PLCB2 Silent p.I460I 0.59 TCGA-EE-A29L-06 15 41228588 41228588 C T DLL4 Missense_Mutation p.A468V 0.89 tolerated(0.12) benign(0.005) TCGA-EE-A29L-06 15 41228589 41228589 C T DLL4 Silent p.A468A 0.83 TCGA-EE-A29L-06 15 42285015 42285015 G A PLA2G4E Missense_Mutation p.R464W 0.39 tolerated(0.19) benign(0.04) TCGA-EE-A29L-06 15 42285016 42285016 G A PLA2G4E Silent p.L463L 0.38 TCGA-EE-A29L-06 15 42439349 42439349 G A PLA2G4F Silent p.L464L 0.22 TCGA-EE-A29L-06 15 42743985 42743985 A C ZNF106 Missense_Mutation p.F139C 0.38 deleterious(0) possibly_damaging(0.855) TCGA-EE-A29L-06 15 43339438 43339438 G A UBR1 Missense_Mutation p.P530L 0.66 deleterious(0) possibly_damaging(0.801) TCGA-EE-A29L-06 15 43712807 43712807 A T TP53BP1 Silent p.A1459A 0.16 TCGA-EE-A29L-06 15 43815729 43815729 G A MAP1A Silent p.Q686Q 0.37 TCGA-EE-A29L-06 15 44180422 44180422 C T FRMD5 Missense_Mutation p.A279T 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 15 45410192 45410192 C T DUOXA1 Missense_Mutation p.G356E 0.33 tolerated_low_confidence(0.35) benign(0) TCGA-EE-A29L-06 15 45431792 45431792 G A DUOX1 Missense_Mutation p.D462N 0.56 tolerated(0.25) benign(0) TCGA-EE-A29L-06 15 45545460 45545460 A T SLC28A2 Missense_Mutation p.E16V 0.38 tolerated(0.1) benign(0.28) TCGA-EE-A29L-06 15 48704789 48704789 C T FBN1 Missense_Mutation p.E2735K 0.68 benign(0.011) TCGA-EE-A29L-06 15 48797337 48797339 GTT - FBN1 In_Frame_Del p.N615del 0.30 TCGA-EE-A29L-06 15 50215689 50215689 G A ATP8B4 Nonsense_Mutation p.R549* 0.26 TCGA-EE-A29L-06 15 50226266 50226266 G A ATP8B4 Silent p.F467F 0.22 TCGA-EE-A29L-06 15 50546385 50546385 C T HDC Missense_Mutation p.G221E 0.61 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 15 51839457 51839457 G A DMXL2 Missense_Mutation p.S239L 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 15 52446245 52446245 G A GNB5 Silent p.A89A 0.30 TCGA-EE-A29L-06 15 52531999 52531999 G A MYO5C Silent p.I878I 0.44 TCGA-EE-A29L-06 15 53908078 53908078 G A WDR72 Silent p.S775S 0.28 TCGA-EE-A29L-06 15 54305220 54305220 G A UNC13C Silent p.K40K 0.74 TCGA-EE-A29L-06 15 55789929 55789929 C T DYX1C1 Silent p.E84E 0.26 TCGA-EE-A29L-06 15 57731589 57731589 G A CGNL1 Silent p.P464P 0.21 TCGA-EE-A29L-06 15 62253984 62253984 G A VPS13C Missense_Mutation p.R1238C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 15 64669029 64669029 A T KIAA0101 Missense_Mutation p.F68Y 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29L-06 15 65490746 65490746 G A CILP Silent p.F626F 0.70 TCGA-EE-A29L-06 15 67571772 67571772 C T IQCH Silent p.F103F 0.69 TCGA-EE-A29L-06 15 68497715 68497715 G A CALML4 5'UTR 0.43 TCGA-EE-A29L-06 15 68497716 68497716 G A CALML4 5'UTR 0.48 TCGA-EE-A29L-06 15 68642958 68642958 C T ITGA11 Missense_Mutation p.E353K 0.67 deleterious(0) probably_damaging(0.962) TCGA-EE-A29L-06 15 71124277 71124277 G A LARP6 3'UTR 0.37 TCGA-EE-A29L-06 15 72021046 72021046 G A THSD4 Missense_Mutation p.E506K 0.25 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A29L-06 15 72119333 72119333 G A MYO9A Missense_Mutation p.S2412F 0.20 deleterious_low_confidence(0.04) benign(0.157) TCGA-EE-A29L-06 15 73002052 73002052 C T BBS4 Missense_Mutation p.P30S 0.35 tolerated(0.06) benign(0.178) TCGA-EE-A29L-06 15 75014995 75014995 G A CYP1A1 Silent p.A148A 0.62 TCGA-EE-A29L-06 15 75498755 75498755 C T C15orf39 Silent p.Y122Y 0.38 TCGA-EE-A29L-06 15 79324609 79324609 G A RASGRF1 Silent p.F336F 0.36 TCGA-EE-A29L-06 15 79760660 79760660 G A KIAA1024 Silent p.L895L 0.22 TCGA-EE-A29L-06 15 81636269 81636269 C T TMC3 Missense_Mutation p.E546K 0.61 deleterious(0) probably_damaging(0.987) TCGA-EE-A29L-06 15 83718918 83718918 C T BTBD1 Missense_Mutation p.D191N 0.74 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29L-06 15 84582012 84582012 A C ADAMTSL3 Missense_Mutation p.E623D 0.71 tolerated(0.45) benign(0.005) TCGA-EE-A29L-06 15 84611407 84611407 G A ADAMTSL3 Missense_Mutation p.R726Q 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 15 85438184 85438184 C T SLC28A1 Silent p.F97F 0.32 TCGA-EE-A29L-06 15 85486673 85486673 C T SLC28A1 Intron 0.14 TCGA-EE-A29L-06 15 86801215 86801215 G A AGBL1 Missense_Mutation p.D262N 0.33 deleterious(0) possibly_damaging(0.494) TCGA-EE-A29L-06 15 88476406 88476406 C T NTRK3 Missense_Mutation p.D576N 0.72 deleterious(0) possibly_damaging(0.688) TCGA-EE-A29L-06 15 88524488 88524488 C T NTRK3 Intron 0.77 TCGA-EE-A29L-06 15 89400846 89400846 A G ACAN Missense_Mutation p.E1677G 0.30 tolerated(0.12) benign(0.241) TCGA-EE-A29L-06 15 89402028 89402028 G A ACAN Missense_Mutation p.G2071E 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-EE-A29L-06 15 89761846 89761846 C T RLBP1 Missense_Mutation p.G31R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 15 89811691 89811691 C T FANCI Silent p.L273L 0.24 TCGA-EE-A29L-06 15 91491904 91491904 C T UNC45A Silent p.L586L 0.56 TCGA-EE-A29L-06 15 92973279 92973279 G A ST8SIA2 Silent p.G33G 0.35 TCGA-EE-A29L-06 16 10274210 10274210 C T GRIN2A Missense_Mutation p.G20D 0.15 deleterious_low_confidence(0.02) benign(0.025) TCGA-EE-A29L-06 16 10532044 10532044 G A ATF7IP2 Silent p.G349G 0.36 TCGA-EE-A29L-06 16 10867934 10867934 C T TVP23A Missense_Mutation p.E96K 0.61 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 16 12059043 12059043 G A TNFRSF17 5'UTR 0.28 TCGA-EE-A29L-06 16 1270521 1270521 C T CACNA1H Missense_Mutation p.P2197S 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 16 1270807 1270807 C T CACNA1H Missense_Mutation p.S2292F 0.61 deleterious_low_confidence(0) benign(0.257) TCGA-EE-A29L-06 16 1291234 1291234 C T TPSAB1 Silent p.L48L 0.27 TCGA-EE-A29L-06 16 14975490 14975490 G A NOMO1 Missense_Mutation p.G992E 0.26 tolerated(0.16) benign(0.05) TCGA-EE-A29L-06 16 15208360 15208360 G A RP11-1186N24.5 RNA 0.21 TCGA-EE-A29L-06 16 1550438 1550438 C T TELO2 Missense_Mutation p.L365F 0.25 deleterious(0) possibly_damaging(0.762) TCGA-EE-A29L-06 16 16315560 16315560 G A ABCC6 Silent p.I55I 0.26 TCGA-EE-A29L-06 16 18856882 18856882 C T SMG1 Missense_Mutation p.A2030T 0.30 tolerated(0.22) possibly_damaging(0.596) TCGA-EE-A29L-06 16 19236082 19236082 A G SYT17 Missense_Mutation p.I384V 0.31 deleterious(0.03) benign(0.285) TCGA-EE-A29L-06 16 19451968 19451968 G A TMC5 Missense_Mutation p.G203E 0.44 tolerated_low_confidence(0.2) benign(0.014) TCGA-EE-A29L-06 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.29 deleterious(0) possibly_damaging(0.505) TCGA-EE-A29L-06 16 20373815 20373815 C T PDILT Missense_Mutation p.A443T 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 20442382 20442382 C T ACSM5 Missense_Mutation p.P398L 0.30 tolerated(0.21) benign(0.22) TCGA-EE-A29L-06 16 2049661 2049661 G A ZNF598 Missense_Mutation p.A630V 0.31 benign(0.287) TCGA-EE-A29L-06 16 20554584 20554584 C T ACSM2B Missense_Mutation p.E428K 0.25 tolerated(0.1) benign(0) TCGA-EE-A29L-06 16 20946785 20946785 G A DNAH3 Missense_Mutation p.P3961L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 20946786 20946786 G A DNAH3 Missense_Mutation p.P3961S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 2129313 2129313 G A TSC2 Silent p.R1056R 0.64 TCGA-EE-A29L-06 16 2138580 2138580 C T TSC2 Missense_Mutation p.S1798F 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29L-06 16 22126769 22126769 C T VWA3A Missense_Mutation p.S264F 0.62 deleterious(0) benign(0.171) TCGA-EE-A29L-06 16 22255972 22255972 C T EEF2K Nonsense_Mutation p.Q90* 0.47 TCGA-EE-A29L-06 16 23366796 23366796 G A SCNN1B Silent p.E254E 0.28 TCGA-EE-A29L-06 16 2373620 2373620 G A ABCA3 Silent p.L173L 0.27 TCGA-EE-A29L-06 16 2373621 2373621 G A ABCA3 Silent p.F172F 0.27 TCGA-EE-A29L-06 16 24909297 24909297 G A SLC5A11 Silent p.V291V 0.26 TCGA-EE-A29L-06 16 24979684 24979684 G A ARHGAP17 Missense_Mutation p.S150L 0.32 deleterious(0.03) possibly_damaging(0.759) TCGA-EE-A29L-06 16 256035 256035 C T LUC7L Missense_Mutation p.E160K 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29L-06 16 28113227 28113227 A T XPO6 Missense_Mutation p.F996I 0.24 deleterious(0) possibly_damaging(0.622) TCGA-EE-A29L-06 16 28167786 28167786 G A XPO6 Missense_Mutation p.P236S 0.31 deleterious(0.03) possibly_damaging(0.669) TCGA-EE-A29L-06 16 28619845 28619845 G A SULT1A1 Silent p.F76F 0.69 TCGA-EE-A29L-06 16 29675288 29675288 C T SPN Missense_Mutation p.S80F 0.54 tolerated(0.06) probably_damaging(0.919) TCGA-EE-A29L-06 16 30680789 30680789 C T FBRS Silent p.H922H 0.22 TCGA-EE-A29L-06 16 30724869 30724869 C T SRCAP Missense_Mutation p.P777L 0.32 unknown(0) TCGA-EE-A29L-06 16 30736199 30736199 C T SRCAP Silent p.S1818S 0.29 TCGA-EE-A29L-06 16 31157129 31157129 C T PRSS36 Missense_Mutation p.G234D 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 16 3139599 3139599 C T ZSCAN10 Silent p.G557G 0.36 TCGA-EE-A29L-06 16 3140196 3140196 G A ZSCAN10 Silent p.F358F 0.24 TCGA-EE-A29L-06 16 31426181 31426181 G A ITGAD Missense_Mutation p.D718N 0.61 tolerated(0.48) possibly_damaging(0.678) TCGA-EE-A29L-06 16 31429642 31429642 C T ITGAD Silent p.F879F 0.29 TCGA-EE-A29L-06 16 31926270 31926270 C T ZNF267 Missense_Mutation p.H234Y 0.33 deleterious(0.02) benign(0.334) TCGA-EE-A29L-06 16 320987 320987 G A RGS11 Silent p.F325F 0.50 TCGA-EE-A29L-06 16 33020510 33020510 G A IGHV3OR16-8 Silent p.L5L 0.25 TCGA-EE-A29L-06 16 347774 347774 A G AXIN1 Missense_Mutation p.Y578H 0.66 tolerated(0.46) benign(0.01) TCGA-EE-A29L-06 16 4164539 4164539 G A ADCY9 Missense_Mutation p.S302F 0.70 deleterious(0) probably_damaging(0.968) TCGA-EE-A29L-06 16 46763512 46763512 C T MYLK3 Silent p.K552K 0.28 TCGA-EE-A29L-06 16 48250034 48250034 G A ABCC11 Silent p.F314F 0.22 TCGA-EE-A29L-06 16 48290548 48290548 C T LONP2 Missense_Mutation p.P166S 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A29L-06 16 48337130 48337130 C T LONP2 Missense_Mutation p.A570V 0.32 deleterious(0) possibly_damaging(0.579) TCGA-EE-A29L-06 16 4935829 4935829 C T PPL Missense_Mutation p.D943N 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-EE-A29L-06 16 49671905 49671905 G A ZNF423 Silent p.S386S 0.17 TCGA-EE-A29L-06 16 5057370 5057370 A C SEC14L5 Silent p.G485G 0.22 TCGA-EE-A29L-06 16 50745455 50745455 C T NOD2 Missense_Mutation p.P545S 0.59 tolerated(0.56) benign(0.006) TCGA-EE-A29L-06 16 50756591 50756591 G A NOD2 Missense_Mutation p.D925N 0.29 tolerated(1) benign(0.003) TCGA-EE-A29L-06 16 5110350 5110350 C T C16orf89 Missense_Mutation p.G149E 0.37 tolerated(1) benign(0) TCGA-EE-A29L-06 16 51171359 51171359 G A SALL1 Silent p.F1213F 0.24 TCGA-EE-A29L-06 16 51173298 51173298 C T SALL1 Silent p.E945E 0.26 TCGA-EE-A29L-06 16 51174598 51174598 G A SALL1 Missense_Mutation p.P512L 0.35 deleterious(0) probably_damaging(0.985) TCGA-EE-A29L-06 16 51175853 51175853 G A SALL1 Missense_Mutation p.P94S 0.30 tolerated(0.16) possibly_damaging(0.754) TCGA-EE-A29L-06 16 53357974 53357974 C T CHD9 Missense_Mutation p.P2605S 0.28 unknown(0) TCGA-EE-A29L-06 16 55363139 55363139 C T IRX6 Silent p.L417L 0.28 TCGA-EE-A29L-06 16 55579712 55579712 C T LPCAT2 Silent p.V306V 0.22 TCGA-EE-A29L-06 16 55579713 55579713 C T LPCAT2 Missense_Mutation p.R307W 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 16 56906280 56906280 C T SLC12A3 Silent p.F290F 0.15 TCGA-EE-A29L-06 16 56947280 56947280 G A SLC12A3 Missense_Mutation p.G1019E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 57059746 57059746 G A NLRC5 Silent p.K297K 0.30 TCGA-EE-A29L-06 16 57965772 57965772 C T CNGB1 Silent p.T461T 0.43 TCGA-EE-A29L-06 16 58701363 58701363 G A SLC38A7 Missense_Mutation p.L439F 0.21 tolerated(0.32) benign(0.002) TCGA-EE-A29L-06 16 58701364 58701364 G A SLC38A7 Silent p.V438V 0.22 TCGA-EE-A29L-06 16 64981796 64981796 G A CDH11 Nonsense_Mutation p.Q701* 0.29 TCGA-EE-A29L-06 16 64984894 64984894 C T CDH11 Missense_Mutation p.R557H 0.18 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A29L-06 16 67263792 67263792 C T FHOD1 Missense_Mutation p.E1106K 0.33 deleterious(0) probably_damaging(0.952) TCGA-EE-A29L-06 16 67293800 67293800 C T SLC9A5 Missense_Mutation p.A598V 0.66 tolerated(1) benign(0.05) TCGA-EE-A29L-06 16 67337157 67337157 G A KCTD19 Silent p.L179L 0.24 TCGA-EE-A29L-06 16 67381445 67381445 T A LRRC36 Missense_Mutation p.F147I 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 16 67681495 67681495 G A RLTPR Silent p.L287L 0.60 TCGA-EE-A29L-06 16 677503 677503 C T RAB40C Silent p.L243L 0.34 TCGA-EE-A29L-06 16 70841794 70841794 C T HYDIN Missense_Mutation p.G5019R 0.27 probably_damaging(0.991) TCGA-EE-A29L-06 16 71149663 71149663 G A HYDIN Silent p.I421I 0.39 TCGA-EE-A29L-06 16 71510036 71510036 G A ZNF19 Silent p.H138H 0.29 TCGA-EE-A29L-06 16 71602167 71602167 G A TAT Silent p.F415F 0.30 TCGA-EE-A29L-06 16 71663492 71663492 C T MARVELD3 Intron 0.75 TCGA-EE-A29L-06 16 716970 716970 C T WDR90 Silent p.L1690L 0.31 TCGA-EE-A29L-06 16 72156856 72156856 G A PMFBP1 Nonsense_Mutation p.R909* 0.26 TCGA-EE-A29L-06 16 74516938 74516938 G A GLG1 Silent p.F552F 0.30 TCGA-EE-A29L-06 16 75563490 75563490 G A CHST5 Missense_Mutation p.R265C 0.28 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29L-06 16 75646739 75646739 G A ADAT1 Missense_Mutation p.P149S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 76555069 76555069 G A CNTNAP4 Missense_Mutation p.E727K 0.32 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A29L-06 16 77317962 77317962 G A ADAMTS18 Missense_Mutation p.P1186L 0.20 tolerated(0.41) benign(0.005) TCGA-EE-A29L-06 16 77359872 77359872 G A ADAMTS18 Silent p.N641N 0.30 TCGA-EE-A29L-06 16 77859274 77859274 C T VAT1L Silent p.F165F 0.78 TCGA-EE-A29L-06 16 78064625 78064625 G A CLEC3A Missense_Mutation p.G170S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 80667001 80667001 C T CDYL2 Missense_Mutation p.R250Q 0.23 deleterious(0) benign(0.061) TCGA-EE-A29L-06 16 81151065 81151065 G A PKD1L2 RNA 0.28 TCGA-EE-A29L-06 16 81198262 81198262 G A PKD1L2 RNA 0.36 TCGA-EE-A29L-06 16 85010019 85010019 G A ZDHHC7 Missense_Mutation p.P323L 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 16 88689680 88689680 C T ZC3H18 Missense_Mutation p.S574F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29L-06 16 88705457 88705457 G A IL17C Silent p.R25R 0.40 TCGA-EE-A29L-06 16 8988680 8988680 G A USP7 Silent p.I1024I 0.25 TCGA-EE-A29L-06 17 10300146 10300146 C T MYH8 Missense_Mutation p.D1446N 0.49 deleterious(0.02) benign(0.077) TCGA-EE-A29L-06 17 10312654 10312654 C T MYH8 Silent p.Q613Q 0.87 TCGA-EE-A29L-06 17 10317277 10317277 C T MYH8 Silent p.G363G 0.47 TCGA-EE-A29L-06 17 10355617 10355617 C T MYH4 Missense_Mutation p.E1127K 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 17 10358326 10358326 G A MYH4 Silent p.I789I 0.41 TCGA-EE-A29L-06 17 10364279 10364279 G A MYH4 Silent p.F367F 0.39 TCGA-EE-A29L-06 17 10395868 10395868 G C MYH1 Silent p.V1895V 0.41 TCGA-EE-A29L-06 17 10416015 10416015 C T MYH1 Missense_Mutation p.E331K 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 17 10432385 10432385 C T MYH2 Silent p.E1122E 0.40 TCGA-EE-A29L-06 17 10439901 10439901 C T MYH2 Silent p.K640K 0.35 TCGA-EE-A29L-06 17 10538243 10538243 C T MYH3 Missense_Mutation p.G1424R 0.43 tolerated(0.43) benign(0.008) TCGA-EE-A29L-06 17 11726309 11726309 G A DNAH9 Silent p.R3068R 1.00 TCGA-EE-A29L-06 17 11872753 11872753 G A DNAH9 Missense_Mutation p.G4457E 1.00 probably_damaging(0.999) TCGA-EE-A29L-06 17 12655993 12655993 C T MYOCD Missense_Mutation p.S463F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 17 12899106 12899106 G A ELAC2 Silent p.H574H 0.33 TCGA-EE-A29L-06 17 15995155 15995155 G A NCOR1 Intron 0.32 TCGA-EE-A29L-06 17 18042918 18042918 G A MYO15A Missense_Mutation p.R1735Q 0.41 unknown(0) TCGA-EE-A29L-06 17 18042919 18042919 G A MYO15A Silent p.R1735R 0.42 TCGA-EE-A29L-06 17 18284921 18284921 G A EVPLL Missense_Mutation p.E75K 0.41 tolerated(1) benign(0) TCGA-EE-A29L-06 17 1840728 1840728 G A RTN4RL1 Missense_Mutation p.L130F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 17 18638748 18638748 C T TRIM16L Missense_Mutation p.P341L 0.66 deleterious(0.03) benign(0.004) TCGA-EE-A29L-06 17 19451411 19451411 C T SLC47A1 Silent p.I140I 0.62 TCGA-EE-A29L-06 17 20224845 20224845 C T AC004702.2 Intron 0.34 TCGA-EE-A29L-06 17 21318927 21318927 C T KCNJ12 Silent p.F91F 0.14 TCGA-EE-A29L-06 17 2202762 2202762 G A SMG6 Missense_Mutation p.P429S 0.50 tolerated_low_confidence(0.26) benign(0.011) TCGA-EE-A29L-06 17 2568691 2568691 C T PAFAH1B1 Missense_Mutation p.R20C 0.38 tolerated(0.18) possibly_damaging(0.806) TCGA-EE-A29L-06 17 25928939 25928939 T C KSR1 Missense_Mutation p.W374R 0.37 tolerated(0.35) benign(0.006) TCGA-EE-A29L-06 17 26604046 26604046 C T AC061975.8 5'Flank 0.60 TCGA-EE-A29L-06 17 27308582 27308582 G A SEZ6 Silent p.P177P 0.18 TCGA-EE-A29L-06 17 28536188 28536188 C T SLC6A4 Missense_Mutation p.E508K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 17 29562966 29562966 C T NF1 Silent p.L1301L 0.28 TCGA-EE-A29L-06 17 29654712 29654712 C T NF1 Nonsense_Mutation p.Q1822* 0.44 TCGA-EE-A29L-06 17 32598269 32598269 C T CCL7 Missense_Mutation p.R61W 0.33 tolerated(0.17) benign(0.022) TCGA-EE-A29L-06 17 33321311 33321311 C G LIG3 Missense_Mutation p.S491C 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 17 33503017 33503017 G A UNC45B Silent p.K665K 0.28 TCGA-EE-A29L-06 17 33680930 33680930 C T SLFN11 Silent p.L449L 0.39 TCGA-EE-A29L-06 17 33690150 33690150 T A SLFN11 Missense_Mutation p.Y226F 0.70 tolerated(0.56) probably_damaging(0.95) TCGA-EE-A29L-06 17 33772623 33772623 A C SLFN13 Missense_Mutation p.L26R 0.60 deleterious(0) probably_damaging(0.982) TCGA-EE-A29L-06 17 33772624 33772624 G A SLFN13 Silent p.L26L 0.61 TCGA-EE-A29L-06 17 34074223 34074223 C T GAS2L2 Silent p.Q299Q 0.38 TCGA-EE-A29L-06 17 34199381 34199381 C T CCL5 Silent p.%3D 0.56 TCGA-EE-A29L-06 17 34304504 34304504 C T CCL16 3'UTR 0.40 TCGA-EE-A29L-06 17 34313769 34313769 C T CCL14 Intron 0.31 TCGA-EE-A29L-06 17 35548085 35548085 G A ACACA Silent p.P1516P 0.22 TCGA-EE-A29L-06 17 35736299 35736299 G A C17orf78 Missense_Mutation p.G124R 0.21 tolerated(0.15) benign(0.204) TCGA-EE-A29L-06 17 3643113 3643113 G A ITGAE Silent p.A836A 0.89 TCGA-EE-A29L-06 17 36478092 36478092 C T MRPL45 Silent p.F248F 0.24 TCGA-EE-A29L-06 17 36873834 36873834 C T MLLT6 Missense_Mutation p.P601S 0.15 tolerated(0.11) unknown(0) TCGA-EE-A29L-06 17 37687603 37687603 C T CDK12 3'UTR 0.24 TCGA-EE-A29L-06 17 38130527 38130527 G A GSDMA Silent p.G251G 0.44 TCGA-EE-A29L-06 17 38434469 38434469 C T WIPF2 Missense_Mutation p.L439F 0.17 tolerated(0.16) benign(0.08) TCGA-EE-A29L-06 17 3856645 3856645 G A ATP2A3 Missense_Mutation p.S72F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 17 38911301 38911301 G A KRT25 Missense_Mutation p.L75F 0.37 tolerated(0.14) benign(0.076) TCGA-EE-A29L-06 17 38928098 38928098 G A KRT26 Missense_Mutation p.L90F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 17 38933210 38933210 G C KRT27 3'UTR 0.19 TCGA-EE-A29L-06 17 39092815 39092815 G A KRT23 Missense_Mutation p.S14F 0.38 tolerated(0.3) benign(0.004) TCGA-EE-A29L-06 17 39149917 39149917 G A KRTAP3-3 3'UTR 0.58 TCGA-EE-A29L-06 17 39471918 39471918 G A KRTAP17-1 5'UTR 0.86 TCGA-EE-A29L-06 17 39521250 39521250 C T KRT33B Missense_Mutation p.R293Q 0.35 deleterious(0.01) probably_damaging(0.955) TCGA-EE-A29L-06 17 39623238 39623238 C T KRT32 Missense_Mutation p.V114M 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 17 39623239 39623239 C A KRT32 Missense_Mutation p.R113S 0.35 deleterious(0) benign(0.138) TCGA-EE-A29L-06 17 39623483 39623483 C T KRT32 Missense_Mutation p.R32Q 0.36 tolerated(0.27) benign(0.017) TCGA-EE-A29L-06 17 40093094 40093094 C T TTC25 RNA 0.27 TCGA-EE-A29L-06 17 40321537 40321537 G A KCNH4 Silent p.F516F 0.27 TCGA-EE-A29L-06 17 40321672 40321672 G A KCNH4 Silent p.F471F 0.32 TCGA-EE-A29L-06 17 40985578 40985578 C T PSME3 5'UTR 0.18 TCGA-EE-A29L-06 17 42226383 42226383 C T C17orf53 Silent p.I404I 0.33 TCGA-EE-A29L-06 17 42226384 42226384 C T C17orf53 Silent p.L405L 0.34 TCGA-EE-A29L-06 17 42929143 42929143 G A EFTUD2 Missense_Mutation p.P920S 0.27 deleterious(0.02) possibly_damaging(0.858) TCGA-EE-A29L-06 17 43924178 43924178 C T SPPL2C Missense_Mutation p.P636S 0.59 tolerated_low_confidence(0.08) benign(0.102) TCGA-EE-A29L-06 17 44109612 44109612 G A KANSL1 Missense_Mutation p.P964L 0.59 deleterious(0) possibly_damaging(0.498) TCGA-EE-A29L-06 17 45299208 45299208 C T MYL4 Silent p.V158V 0.27 TCGA-EE-A29L-06 17 45820503 45820503 C T TBX21 Missense_Mutation p.S238L 0.63 deleterious(0) benign(0.049) TCGA-EE-A29L-06 17 46198718 46198718 C T SNX11 Missense_Mutation p.P221S 0.27 tolerated_low_confidence(0.18) benign(0.006) TCGA-EE-A29L-06 17 47583862 47583862 C T NGFR Missense_Mutation p.S137F 0.44 tolerated(0.17) probably_damaging(0.965) TCGA-EE-A29L-06 17 48050392 48050392 C T DLX4 Intron 0.31 TCGA-EE-A29L-06 17 48264133 48264133 C T COL1A1 Missense_Mutation p.D1228N 0.25 unknown(0) TCGA-EE-A29L-06 17 48606153 48606153 G A MYCBPAP Silent p.G878G 0.62 TCGA-EE-A29L-06 17 48646309 48646309 C T CACNA1G Silent p.I107I 0.62 TCGA-EE-A29L-06 17 48650027 48650027 A C CACNA1G Missense_Mutation p.T287P 0.23 tolerated(0.76) benign(0.006) TCGA-EE-A29L-06 17 48653522 48653522 G A CACNA1G Missense_Mutation p.G587R 0.36 deleterious(0.03) benign(0.02) TCGA-EE-A29L-06 17 48678454 48678454 C T CACNA1G Silent p.F1278F 0.27 TCGA-EE-A29L-06 17 48745355 48745355 C T ABCC3 Silent p.I589I 0.31 TCGA-EE-A29L-06 17 48746588 48746588 G A ABCC3 Silent p.L675L 0.53 TCGA-EE-A29L-06 17 5066201 5066201 G A USP6 Missense_Mutation p.D980N 0.95 tolerated_low_confidence(0.2) benign(0.314) TCGA-EE-A29L-06 17 5074166 5074166 G A USP6 Missense_Mutation p.E1304K 0.50 tolerated_low_confidence(0.29) benign(0.058) TCGA-EE-A29L-06 17 53237186 53237186 C T STXBP4 Missense_Mutation p.H526Y 0.61 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A29L-06 17 5487306 5487306 G A NLRP1 5'Flank 0.29 TCGA-EE-A29L-06 17 54912440 54912440 A C DGKE Missense_Mutation p.D95A 0.39 tolerated(0.06) benign(0.174) TCGA-EE-A29L-06 17 54969163 54969163 G A TRIM25 Silent p.V597V 0.28 TCGA-EE-A29L-06 17 56327781 56327781 G A LPO Silent p.R193R 0.43 TCGA-EE-A29L-06 17 56382928 56382928 C T BZRAP1 Silent p.Q1778Q 0.37 TCGA-EE-A29L-06 17 59161840 59161840 C T BCAS3 Silent p.V795V 0.19 TCGA-EE-A29L-06 17 59161841 59161841 C T BCAS3 Missense_Mutation p.R796C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 17 60342342 60342342 G A TBC1D3P2 3'Flank 0.54 TCGA-EE-A29L-06 17 60493450 60493450 G A EFCAB3 Silent p.G411G 0.21 TCGA-EE-A29L-06 17 60814507 60814507 C T MARCH10 Missense_Mutation p.G241E 0.18 deleterious(0.02) benign(0.172) TCGA-EE-A29L-06 17 61498624 61498624 G A TANC2 Missense_Mutation p.E1761K 0.64 deleterious_low_confidence(0.02) benign(0.091) TCGA-EE-A29L-06 17 61557763 61557763 G A ACE Missense_Mutation p.E241K 0.75 deleterious(0.02) possibly_damaging(0.805) TCGA-EE-A29L-06 17 61949434 61949434 G A CSH2 3'UTR 0.66 TCGA-EE-A29L-06 17 61987521 61987521 C T CSHL1 Splice_Site p.X157_splice 0.18 TCGA-EE-A29L-06 17 6367089 6367089 C T PITPNM3 Missense_Mutation p.D757N 0.73 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 17 64171218 64171218 C T CEP112 Nonsense_Mutation p.W138* 0.18 TCGA-EE-A29L-06 17 65907642 65907642 C T BPTF Silent p.F1214F 0.29 TCGA-EE-A29L-06 17 65914840 65914840 C T BPTF Nonsense_Mutation p.Q1772* 0.22 TCGA-EE-A29L-06 17 66039435 66039435 C T KPNA2 Missense_Mutation p.P296S 0.16 tolerated(0.06) benign(0.378) TCGA-EE-A29L-06 17 66937028 66937028 A G ABCA8 Missense_Mutation p.S58P 0.09 deleterious(0.05) possibly_damaging(0.811) TCGA-EE-A29L-06 17 67103946 67103946 G A ABCA6 Silent p.F760F 0.25 TCGA-EE-A29L-06 17 7164257 7164257 C T CLDN7 Missense_Mutation p.G91S 0.91 tolerated(0.19) benign(0.438) TCGA-EE-A29L-06 17 72527465 72527465 G A CD300LB Missense_Mutation p.L46F 0.29 tolerated(0.09) possibly_damaging(0.823) TCGA-EE-A29L-06 17 72540920 72540920 C T CD300C Silent p.G76G 0.25 TCGA-EE-A29L-06 17 73257652 73257652 C T GGA3 Missense_Mutation p.G6E 0.20 tolerated(0.11) probably_damaging(0.996) TCGA-EE-A29L-06 17 73257653 73257653 C T GGA3 Missense_Mutation p.G6R 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29L-06 17 7329869 7329869 G T C17orf74 Nonsense_Mutation p.E187* 0.41 TCGA-EE-A29L-06 17 73503700 73503700 T A CASKIN2 Missense_Mutation p.E70V 0.77 deleterious(0) possibly_damaging(0.679) TCGA-EE-A29L-06 17 73571036 73571036 G A LLGL2 3'UTR 0.84 TCGA-EE-A29L-06 17 73774661 73774661 A G H3F3B 3'UTR 0.30 TCGA-EE-A29L-06 17 74015056 74015056 C T EVPL Missense_Mutation p.R408Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 17 74060080 74060080 C A SRP68 Missense_Mutation p.A180S 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29L-06 17 7578384 7578401 GCAGCGCTCATGGTGGGG - TP53 In_Frame_Del p.P177_C182del 0.48 TCGA-EE-A29L-06 17 76471856 76471856 C T DNAH17 Silent p.G2724G 0.39 TCGA-EE-A29L-06 17 76526534 76526534 G A DNAH17 Missense_Mutation p.H1059Y 0.20 benign(0.003) TCGA-EE-A29L-06 17 76526586 76526586 G A DNAH17 Silent p.S1041S 0.15 TCGA-EE-A29L-06 17 76526587 76526587 G A DNAH17 Missense_Mutation p.S1041F 0.16 benign(0.008) TCGA-EE-A29L-06 17 76566443 76566443 G A DNAH17 Silent p.F310F 0.18 TCGA-EE-A29L-06 17 77042686 77042686 C T C1QTNF1 Missense_Mutation p.P69S 0.30 tolerated(0.11) benign(0.009) TCGA-EE-A29L-06 17 78092138 78092138 C T GAA Silent p.V876V 0.23 TCGA-EE-A29L-06 17 78445638 78445638 C T NPTX1 Missense_Mutation p.G324E 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 17 79202985 79202985 T G ENTHD2 Missense_Mutation p.S441R 0.19 tolerated(0.1) probably_damaging(0.957) TCGA-EE-A29L-06 17 80210338 80210338 G A CSNK1D Silent p.P236P 0.25 TCGA-EE-A29L-06 17 80373320 80373320 G A OGFOD3 Silent p.I86I 0.26 TCGA-EE-A29L-06 17 8449957 8449957 G A MYH10 Missense_Mutation p.L395F 0.47 possibly_damaging(0.756) TCGA-EE-A29L-06 17 9757905 9757905 C T GLP2R Missense_Mutation p.L200F 0.50 tolerated(0.07) benign(0.17) TCGA-EE-A29L-06 17 9783831 9783831 C T GLP2R Missense_Mutation p.H428Y 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A29L-06 17 9804434 9804434 G A RCVRN Intron 0.86 TCGA-EE-A29L-06 17 9808255 9808255 C T RCVRN Silent p.L81L 0.58 TCGA-EE-A29L-06 18 13742548 13742548 C T RNMT Nonsense_Mutation p.Q346* 0.18 TCGA-EE-A29L-06 18 14479245 14479245 C T CXADRP3 RNA 0.53 TCGA-EE-A29L-06 18 21513856 21513856 G A LAMA3 Missense_Mutation p.G2940D 0.12 benign(0.066) TCGA-EE-A29L-06 18 23713929 23713929 G A PSMA8 5'UTR 0.19 TCGA-EE-A29L-06 18 24496126 24496126 G A CHST9 3'UTR 0.43 TCGA-EE-A29L-06 18 28588235 28588235 C T DSC3 Missense_Mutation p.R507K 0.31 tolerated(0.12) probably_damaging(0.997) TCGA-EE-A29L-06 18 28602348 28602348 G A DSC3 Missense_Mutation p.P299L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 18 28671000 28671000 G A DSC2 Silent p.F155F 0.24 TCGA-EE-A29L-06 18 28719849 28719849 G A DSC1 Nonsense_Mutation p.Q509* 0.12 TCGA-EE-A29L-06 18 28720073 28720073 G A DSC1 Silent p.F484F 0.13 TCGA-EE-A29L-06 18 29039109 29039109 C T DSG3 Silent p.F162F 0.12 TCGA-EE-A29L-06 18 29052688 29052688 G A DSG3 Missense_Mutation p.E680K 0.17 deleterious(0.04) possibly_damaging(0.493) TCGA-EE-A29L-06 18 29116202 29116202 C T DSG2 Silent p.I487I 0.44 TCGA-EE-A29L-06 18 30254561 30254561 G A KLHL14 3'UTR 0.22 TCGA-EE-A29L-06 18 3102484 3102484 C T MYOM1 Missense_Mutation p.S1188N 0.19 tolerated(0.09) benign(0.004) TCGA-EE-A29L-06 18 3131480 3131480 C T MYOM1 Missense_Mutation p.G800E 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29L-06 18 31538286 31538286 C T NOL4 Missense_Mutation p.E385K 0.37 deleterious(0) possibly_damaging(0.646) TCGA-EE-A29L-06 18 42531786 42531786 G A SETBP1 Nonsense_Mutation p.W827* 0.16 TCGA-EE-A29L-06 18 42532125 42532125 G A SETBP1 Silent p.R940R 0.25 TCGA-EE-A29L-06 18 43204619 43204619 G A SLC14A2 5'UTR 0.37 TCGA-EE-A29L-06 18 43319587 43319587 G A SLC14A1 Missense_Mutation p.M358I 0.17 tolerated(0.08) benign(0.001) TCGA-EE-A29L-06 18 43524016 43524016 G A EPG5 Missense_Mutation p.P583S 0.12 deleterious(0) probably_damaging(0.986) TCGA-EE-A29L-06 18 44555256 44555256 T A TCEB3C Missense_Mutation p.M320L 0.05 deleterious(0) possibly_damaging(0.558) TCGA-EE-A29L-06 18 44560008 44560008 G A TCEB3B Missense_Mutation p.A543V 0.62 deleterious(0) benign(0.141) TCGA-EE-A29L-06 18 44627357 44627357 G A KATNAL2 Missense_Mutation p.R461K 0.42 tolerated(0.9) benign(0.001) TCGA-EE-A29L-06 18 47101752 47101752 C G LIPG Silent p.A195A 0.15 TCGA-EE-A29L-06 18 47431112 47431112 C T MYO5B Missense_Mutation p.R834K 0.12 tolerated(0.58) benign(0.003) TCGA-EE-A29L-06 18 47455914 47455914 C T MYO5B Silent p.T686T 0.20 TCGA-EE-A29L-06 18 51851088 51851088 C T STARD6 Missense_Mutation p.G213R 0.20 tolerated(0.09) benign(0.01) TCGA-EE-A29L-06 18 52544899 52544899 G A RAB27B Missense_Mutation p.R28K 0.32 deleterious(0.02) benign(0.114) TCGA-EE-A29L-06 18 52556538 52556538 G A RAB27B Missense_Mutation p.R184Q 0.20 deleterious(0.03) benign(0.083) TCGA-EE-A29L-06 18 52946885 52946885 G A TCF4 Silent p.V286V 0.16 TCGA-EE-A29L-06 18 54814897 54814897 G A BOD1L2 Silent p.R118R 0.18 TCGA-EE-A29L-06 18 56205220 56205220 G A ALPK2 Silent p.F733F 0.36 TCGA-EE-A29L-06 18 56246784 56246784 T G ALPK2 Missense_Mutation p.Q408H 0.15 deleterious(0.04) benign(0.073) TCGA-EE-A29L-06 18 56819910 56819910 C T SEC11C Missense_Mutation p.H114Y 0.20 deleterious(0.04) benign(0.33) TCGA-EE-A29L-06 18 58038893 58038893 G A MC4R Silent p.P230P 0.19 TCGA-EE-A29L-06 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.19 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A29L-06 18 60029004 60029004 G A TNFRSF11A Silent p.R236R 0.18 TCGA-EE-A29L-06 18 61170677 61170677 C T SERPINB5 Missense_Mutation p.P284S 0.53 deleterious(0.02) benign(0.005) TCGA-EE-A29L-06 18 61264294 61264294 G A SERPINB13 Silent p.E291E 0.14 TCGA-EE-A29L-06 18 61471516 61471516 C T SERPINB7 Missense_Mutation p.P264S 0.41 tolerated(0.97) benign(0.203) TCGA-EE-A29L-06 18 6213229 6213229 C T L3MBTL4 Missense_Mutation p.M300I 0.38 deleterious(0) benign(0.38) TCGA-EE-A29L-06 18 6244543 6244543 C T L3MBTL4 Missense_Mutation p.M88I 0.18 deleterious(0) possibly_damaging(0.635) TCGA-EE-A29L-06 18 67344984 67344984 G A DOK6 Missense_Mutation p.E102K 0.13 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A29L-06 18 6882234 6882234 C T ARHGAP28 Silent p.F304F 0.20 TCGA-EE-A29L-06 18 6966186 6966186 G A LAMA1 Missense_Mutation p.S2337L 0.16 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A29L-06 18 7009357 7009357 C T LAMA1 Nonsense_Mutation p.W1294* 0.27 TCGA-EE-A29L-06 18 7050746 7050746 C T LAMA1 Missense_Mutation p.E179K 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 18 72228244 72228244 G A CNDP1 Missense_Mutation p.E153K 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A29L-06 18 7231221 7231221 C T LRRC30 Missense_Mutation p.P29S 0.51 tolerated(0.81) benign(0.001) TCGA-EE-A29L-06 18 72913569 72913569 A C ZADH2 Nonsense_Mutation p.Y312* 0.19 TCGA-EE-A29L-06 18 74563788 74563788 C T ZNF236 Missense_Mutation p.H84Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 18 76754347 76754347 G A SALL3 Missense_Mutation p.D786N 0.19 tolerated(0.09) benign(0.044) TCGA-EE-A29L-06 18 76754633 76754633 C T SALL3 Missense_Mutation p.S881L 0.60 deleterious(0.01) possibly_damaging(0.705) TCGA-EE-A29L-06 18 76755226 76755226 C T SALL3 Missense_Mutation p.P1079S 0.21 tolerated(0.31) benign(0.024) TCGA-EE-A29L-06 18 77624240 77624240 C T KCNG2 Silent p.A191A 0.18 TCGA-EE-A29L-06 18 77895177 77895177 C T ADNP2 Silent p.P627P 0.18 TCGA-EE-A29L-06 18 9255124 9255124 C T ANKRD12 Missense_Mutation p.S620L 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.721) TCGA-EE-A29L-06 19 10157457 10157457 G A C3P1 RNA 0.14 TCGA-EE-A29L-06 19 11460799 11460799 C T CCDC159 Silent p.F50F 0.19 TCGA-EE-A29L-06 19 11464191 11464191 C T CCDC159 Missense_Mutation p.P211L 0.16 tolerated(0.3) benign(0.014) TCGA-EE-A29L-06 19 11725377 11725377 C T ZNF627 Silent p.F13F 0.23 TCGA-EE-A29L-06 19 11978400 11978400 C T ZNF439 Silent p.S172S 0.18 TCGA-EE-A29L-06 19 12090031 12090031 T C ZNF763 3'UTR 0.14 TCGA-EE-A29L-06 19 12769085 12769085 G A MAN2B1 Missense_Mutation p.R395W 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 19 12866691 12866691 C T BEST2 Missense_Mutation p.P297L 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 19 12924217 12924217 C T RNASEH2A Silent p.A279A 0.32 TCGA-EE-A29L-06 19 12924218 12924218 C T RNASEH2A Missense_Mutation p.R280C 0.32 tolerated(0.1) benign(0) TCGA-EE-A29L-06 19 12981851 12981851 G A MAST1 Missense_Mutation p.S1043N 0.43 deleterious(0) probably_damaging(0.95) TCGA-EE-A29L-06 19 13006835 13006835 C T GCDH Missense_Mutation p.L179F 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29L-06 19 13246315 13246315 C T NACC1 Silent p.F98F 0.36 TCGA-EE-A29L-06 19 14037683 14037683 C T CC2D1A Missense_Mutation p.P708L 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 19 14862260 14862260 C T EMR2 Missense_Mutation p.G671E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 19 15124546 15124546 G A CCDC105 Silent p.R211R 0.16 TCGA-EE-A29L-06 19 15132229 15132229 A T CCDC105 Missense_Mutation p.E313D 0.62 tolerated(0.34) benign(0.017) TCGA-EE-A29L-06 19 15271653 15271653 G A NOTCH3 Silent p.S2262S 0.23 TCGA-EE-A29L-06 19 15350470 15350470 G A BRD4 Missense_Mutation p.R1149W 0.48 possibly_damaging(0.689) TCGA-EE-A29L-06 19 15769554 15769554 C T CYP4F3 Silent p.R444R 0.26 TCGA-EE-A29L-06 19 15784509 15784509 G A CYP4F12 Missense_Mutation p.R57Q 0.27 tolerated(0.13) benign(0.023) TCGA-EE-A29L-06 19 15852289 15852289 C T OR10H3 Silent p.F29F 0.24 TCGA-EE-A29L-06 19 1615671 1615671 G A TCF3 Intron 0.56 TCGA-EE-A29L-06 19 1615672 1615672 G A TCF3 Intron 0.57 TCGA-EE-A29L-06 19 16590049 16590049 C T CALR3 Missense_Mutation p.E350K 0.18 tolerated(0.07) possibly_damaging(0.773) TCGA-EE-A29L-06 19 16770957 16770957 G A SMIM7 5'UTR 0.20 TCGA-EE-A29L-06 19 16799065 16799065 C T TMEM38A Silent p.N261N 0.25 TCGA-EE-A29L-06 19 16976290 16976290 C T SIN3B Missense_Mutation p.R517W 0.44 deleterious(0) benign(0.386) TCGA-EE-A29L-06 19 17038926 17038926 C T CPAMD8 Missense_Mutation p.R1135Q 0.42 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A29L-06 19 17091442 17091442 G A CPAMD8 Silent p.L531L 0.43 TCGA-EE-A29L-06 19 17396343 17396343 C T ANKLE1 Missense_Mutation p.R494W 0.26 deleterious(0) probably_damaging(0.922) TCGA-EE-A29L-06 19 18707711 18707711 C T CRLF1 Silent p.V282V 0.18 TCGA-EE-A29L-06 19 18775173 18775173 C T KLHL26 Silent p.L62L 0.28 TCGA-EE-A29L-06 19 19646234 19646234 C T YJEFN3 Missense_Mutation p.P173L 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 19757947 19757947 G A ATP13A1 Silent p.S1032S 0.17 TCGA-EE-A29L-06 19 1980306 1980306 C T CSNK1G2 3'UTR 0.38 TCGA-EE-A29L-06 19 20002848 20002848 C T ZNF253 Silent p.A264A 0.26 TCGA-EE-A29L-06 19 20307999 20307999 G A ZNF486 Silent p.V160V 0.19 TCGA-EE-A29L-06 19 2111297 2111297 G A AP3D1 Missense_Mutation p.S991F 0.14 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A29L-06 19 21720110 21720110 C T ZNF429 Missense_Mutation p.H419Y 0.24 deleterious(0.01) benign(0.136) TCGA-EE-A29L-06 19 2226333 2226333 C T DOT1L Silent p.S1271S 0.29 TCGA-EE-A29L-06 19 22940868 22940868 G A ZNF99 Missense_Mutation p.H615Y 0.36 deleterious(0.03) benign(0.103) TCGA-EE-A29L-06 19 31025854 31025854 G A ZNF536 Silent p.G757G 0.26 TCGA-EE-A29L-06 19 31039511 31039511 G A ZNF536 Silent p.Q995Q 0.24 TCGA-EE-A29L-06 19 31767939 31767939 C T TSHZ3 Silent p.G920G 0.18 TCGA-EE-A29L-06 19 31768792 31768792 G A TSHZ3 Missense_Mutation p.S636F 0.37 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A29L-06 19 33167751 33167751 C T RGS9BP Silent p.S194S 0.40 TCGA-EE-A29L-06 19 34833008 34833008 C T KIAA0355 Silent p.S723S 0.21 TCGA-EE-A29L-06 19 34840010 34840011 TC - KIAA0355 Frame_Shift_Del p.S927Hfs*6 0.16 TCGA-EE-A29L-06 19 3574509 3574509 C T HMG20B Silent p.H92H 0.57 TCGA-EE-A29L-06 19 35801058 35801058 G A MAG Missense_Mutation p.G505R 0.52 tolerated(0.25) benign(0.079) TCGA-EE-A29L-06 19 35823503 35823503 G A CD22 Missense_Mutation p.E30K 0.21 tolerated(1) benign(0.001) TCGA-EE-A29L-06 19 36050865 36050865 C T ATP4A Missense_Mutation p.E300K 0.15 tolerated(0.11) probably_damaging(0.996) TCGA-EE-A29L-06 19 374006 374006 C T THEG Missense_Mutation p.G146E 0.67 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-EE-A29L-06 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.42 deleterious(0.04) benign(0.382) TCGA-EE-A29L-06 19 37677298 37677298 G A ZNF585B Missense_Mutation p.P381S 0.22 deleterious(0.03) probably_damaging(0.981) TCGA-EE-A29L-06 19 37879873 37879873 G A ZNF527 Missense_Mutation p.G308R 0.53 tolerated(0.25) probably_damaging(0.973) TCGA-EE-A29L-06 19 38190771 38190771 G A ZNF607 Silent p.I87I 0.19 TCGA-EE-A29L-06 19 38800130 38800130 G A YIF1B Missense_Mutation p.A71V 0.12 tolerated(0.31) benign(0.017) TCGA-EE-A29L-06 19 38845361 38845361 C T CATSPERG Missense_Mutation p.R337C 0.23 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29L-06 19 38959949 38959949 C T RYR1 Silent p.F1187F 0.44 TCGA-EE-A29L-06 19 38960045 38960045 G A RYR1 Silent p.Q1219Q 0.17 TCGA-EE-A29L-06 19 39062679 39062679 G A RYR1 Silent p.G4589G 0.24 TCGA-EE-A29L-06 19 3909546 3909546 G A ATCAY Missense_Mutation p.G237D 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 39369677 39369677 G A SIRT2 3'UTR 0.45 TCGA-EE-A29L-06 19 39957154 39957154 C T SUPT5H Missense_Mutation p.S304F 0.35 tolerated(0.56) benign(0.014) TCGA-EE-A29L-06 19 39959788 39959788 C T SUPT5H Silent p.L405L 0.20 TCGA-EE-A29L-06 19 39998800 39998800 C T DLL3 3'UTR 0.29 TCGA-EE-A29L-06 19 40093199 40093199 G A LGALS13 5'UTR 0.42 TCGA-EE-A29L-06 19 40228601 40228601 C A CLC 5'UTR 0.20 TCGA-EE-A29L-06 19 40228602 40228602 C A CLC 5'UTR 0.20 TCGA-EE-A29L-06 19 40357711 40357711 G A FCGBP Missense_Mutation p.S5201F 0.15 probably_damaging(0.99) TCGA-EE-A29L-06 19 40382549 40382549 G A FCGBP Missense_Mutation p.S3446F 0.33 possibly_damaging(0.485) TCGA-EE-A29L-06 19 40900623 40900623 C T PRX Silent p.K1212K 0.26 TCGA-EE-A29L-06 19 40903778 40903778 G A PRX Missense_Mutation p.P161S 0.48 deleterious(0) possibly_damaging(0.803) TCGA-EE-A29L-06 19 41063071 41063071 G A SPTBN4 Missense_Mutation p.G1811E 0.43 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29L-06 19 41208507 41208507 G A ADCK4 Silent p.F297F 0.22 TCGA-EE-A29L-06 19 41442133 41442133 C T CYP2B7P RNA 0.50 TCGA-EE-A29L-06 19 41515295 41515295 G A CYP2B6 Missense_Mutation p.E273K 0.17 tolerated(0.07) possibly_damaging(0.746) TCGA-EE-A29L-06 19 41600253 41600253 C T CYP2A13 Silent p.I359I 0.25 TCGA-EE-A29L-06 19 42187742 42187742 C T CEACAM7 Missense_Mutation p.S227N 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 42223929 42223929 C T CEACAM5 Missense_Mutation p.P525S 0.42 tolerated(0.07) benign(0.292) TCGA-EE-A29L-06 19 4222714 4222714 G A ANKRD24 Silent p.K1073K 0.39 TCGA-EE-A29L-06 19 42259569 42259569 C T CEACAM6 Missense_Mutation p.P8L 0.25 tolerated(0.21) benign(0.008) TCGA-EE-A29L-06 19 42353036 42353036 C T DMRTC2 Silent p.P207P 0.44 TCGA-EE-A29L-06 19 42507715 42507715 C T GRIK5 Missense_Mutation p.R795Q 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29L-06 19 42794425 42794425 C T CIC Missense_Mutation p.S502F 0.23 probably_damaging(0.93) TCGA-EE-A29L-06 19 42863316 42863316 T A MEGF8 Missense_Mutation p.S1737T 0.44 tolerated(1) benign(0.021) TCGA-EE-A29L-06 19 43234047 43234047 C T PSG3 Missense_Mutation p.E291K 0.17 tolerated(0.77) benign(0.042) TCGA-EE-A29L-06 19 43257480 43257480 G A PSG8 3'Flank 0.15 TCGA-EE-A29L-06 19 43439693 43439693 C T PSG7 Silent p.%3D 0.44 TCGA-EE-A29L-06 19 43679400 43679400 C T PSG5 Missense_Mutation p.E311K 0.52 tolerated(0.19) probably_damaging(0.93) TCGA-EE-A29L-06 19 43690601 43690601 G A PSG5 5'UTR 0.28 TCGA-EE-A29L-06 19 44426436 44426436 A C ZNF45 Intron 0.24 TCGA-EE-A29L-06 19 44536305 44536305 C T ZNF222 Missense_Mutation p.L200F 0.53 tolerated(0.06) probably_damaging(0.992) TCGA-EE-A29L-06 19 44933669 44933669 C T ZNF229 Silent p.G429G 0.20 TCGA-EE-A29L-06 19 44933871 44933871 G A ZNF229 Missense_Mutation p.S362L 0.25 tolerated(0.09) benign(0.007) TCGA-EE-A29L-06 19 45281143 45281143 C T CBLC 5'UTR 0.47 TCGA-EE-A29L-06 19 45281499 45281499 G A CBLC Missense_Mutation p.R104K 0.35 tolerated(1) benign(0.001) TCGA-EE-A29L-06 19 45281500 45281500 G T CBLC Missense_Mutation p.R104S 0.36 deleterious(0.02) benign(0.01) TCGA-EE-A29L-06 19 45321855 45321855 C T BCAM Silent p.S385S 0.44 TCGA-EE-A29L-06 19 45899467 45899467 A T PPP1R13L Missense_Mutation p.W288R 0.38 deleterious(0) probably_damaging(0.931) TCGA-EE-A29L-06 19 46195224 46195224 C T SNRPD2 5'UTR 0.52 TCGA-EE-A29L-06 19 46915887 46915887 T C CCDC8 Missense_Mutation p.K61E 0.25 probably_damaging(0.983) TCGA-EE-A29L-06 19 47725012 47725012 G A BBC3 Silent p.P244P 0.50 TCGA-EE-A29L-06 19 47725013 47725013 G A BBC3 Missense_Mutation p.P244L 0.50 deleterious_low_confidence(0.02) benign(0.188) TCGA-EE-A29L-06 19 47823499 47823499 C T C5AR1 Silent p.I155I 0.18 TCGA-EE-A29L-06 19 47920552 47920552 C T MEIS3 Missense_Mutation p.S23N 0.16 deleterious(0.04) benign(0.003) TCGA-EE-A29L-06 19 4816466 4816466 G A TICAM1 Missense_Mutation p.P642S 0.18 tolerated(0.69) benign(0.003) TCGA-EE-A29L-06 19 4816467 4816467 G A TICAM1 Silent p.P641P 0.19 TCGA-EE-A29L-06 19 48305217 48305217 G A TPRX1 Missense_Mutation p.P351S 0.40 tolerated_low_confidence(0.21) probably_damaging(0.932) TCGA-EE-A29L-06 19 48386958 48386958 C T SULT2A1 Missense_Mutation p.R74Q 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A29L-06 19 48955988 48955988 C T GRWD1 Silent p.F349F 0.47 TCGA-EE-A29L-06 19 49244246 49244246 G A IZUMO1 Silent p.S324S 0.16 TCGA-EE-A29L-06 19 49362808 49362808 G A PLEKHA4 Missense_Mutation p.R204C 0.49 deleterious(0.02) possibly_damaging(0.708) TCGA-EE-A29L-06 19 49368804 49368804 C T PLEKHA4 Missense_Mutation p.D50N 0.42 tolerated(0.72) probably_damaging(0.956) TCGA-EE-A29L-06 19 49416799 49416799 C T NUCB1 Silent p.P245P 0.51 TCGA-EE-A29L-06 19 49459483 49459483 C T BAX Missense_Mutation p.P88S 0.20 tolerated(0.23) benign(0.256) TCGA-EE-A29L-06 19 49459484 49459484 C T BAX Missense_Mutation p.P88L 0.17 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A29L-06 19 49470062 49470062 C T FTL 3'UTR 0.26 TCGA-EE-A29L-06 19 49527216 49527216 G A CGB Nonsense_Mutation p.Q5* 0.20 TCGA-EE-A29L-06 19 51021937 51021937 C T LRRC4B Missense_Mutation p.G345S 0.15 tolerated(0.65) benign(0.003) TCGA-EE-A29L-06 19 51165595 51165595 G A SHANK1 Missense_Mutation p.S2038F 0.26 unknown(0) TCGA-EE-A29L-06 19 51170365 51170365 C T SHANK1 Missense_Mutation p.D1618N 0.27 unknown(0) TCGA-EE-A29L-06 19 51217121 51217121 G A SHANK1 Silent p.F242F 0.20 TCGA-EE-A29L-06 19 51219543 51219543 G A SHANK1 Missense_Mutation p.P150S 0.19 probably_damaging(0.996) TCGA-EE-A29L-06 19 51518107 51518107 G A KLK10 Silent p.T260T 0.20 TCGA-EE-A29L-06 19 51532486 51532486 G A KLK12 Intron 0.24 TCGA-EE-A29L-06 19 51629048 51629048 G A SIGLEC9 Missense_Mutation p.D206N 0.58 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29L-06 19 51650079 51650079 T C SIGLEC7 Missense_Mutation p.F366L 0.45 tolerated(0.3) benign(0.326) TCGA-EE-A29L-06 19 51885677 51885677 G A LIM2 Missense_Mutation p.S149F 0.47 deleterious(0.04) benign(0.002) TCGA-EE-A29L-06 19 51961290 51961290 C T SIGLEC8 Missense_Mutation p.D118N 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 51986310 51986310 A C CEACAM18 Missense_Mutation p.D299A 0.22 tolerated(1) benign(0.001) TCGA-EE-A29L-06 19 52033225 52033225 G A SIGLEC6 Silent p.I255I 0.17 TCGA-EE-A29L-06 19 52115563 52115563 G A SIGLEC5 Missense_Mutation p.S526F 0.24 tolerated(0.09) benign(0.083) TCGA-EE-A29L-06 19 52249102 52249102 C T FPR1 3'UTR 0.18 TCGA-EE-A29L-06 19 52249172 52249172 G A FPR1 3'UTR 0.20 TCGA-EE-A29L-06 19 52376556 52376556 G A ZNF577 Silent p.L229L 0.11 TCGA-EE-A29L-06 19 53303922 53303922 G A ZNF28 Silent p.F392F 0.40 TCGA-EE-A29L-06 19 535852 535852 C T CDC34 Missense_Mutation p.P65S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 53611784 53611784 A C ZNF415 Missense_Mutation p.F505C 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29L-06 19 53668809 53668809 G A ZNF665 Missense_Mutation p.H312Y 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A29L-06 19 53770738 53770738 C T VN1R4 Missense_Mutation p.G61R 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29L-06 19 53792865 53792865 C T BIRC8 3'UTR 0.32 TCGA-EE-A29L-06 19 54140070 54140070 C T DPRX Missense_Mutation p.P135L 0.23 deleterious(0) probably_damaging(0.968) TCGA-EE-A29L-06 19 54225474 54225474 A C MIR520G RNA 0.25 TCGA-EE-A29L-06 19 54257317 54257317 G A MIR527 RNA 0.43 TCGA-EE-A29L-06 19 54261508 54261508 G A MIR1283-2 RNA 0.20 TCGA-EE-A29L-06 19 54313058 54313058 C T NLRP12 Missense_Mutation p.E619K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 19 54403977 54403977 G A PRKCG Missense_Mutation p.G517R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 19 54483246 54483246 C T CACNG8 Silent p.L165L 0.28 TCGA-EE-A29L-06 19 54649670 54649670 C T CNOT3 Missense_Mutation p.P243L 0.21 tolerated(0.07) benign(0.11) TCGA-EE-A29L-06 19 54759232 54759232 C T LILRB5 Missense_Mutation p.G290E 0.41 deleterious(0.01) possibly_damaging(0.871) TCGA-EE-A29L-06 19 54782143 54782143 G A LILRB2 Missense_Mutation p.P410L 0.24 deleterious(0) probably_damaging(0.938) TCGA-EE-A29L-06 19 54783445 54783445 C T LILRB2 Missense_Mutation p.G138E 0.46 tolerated(0.07) benign(0.252) TCGA-EE-A29L-06 19 54823363 54823363 C T LILRA5 Silent p.G60G 0.23 TCGA-EE-A29L-06 19 55045040 55045040 C T KIR3DX1 Missense_Mutation p.R54W 0.28 deleterious(0.02) possibly_damaging(0.86) TCGA-EE-A29L-06 19 55344234 55344234 C T KIR3DL1 3'Flank 0.45 TCGA-EE-A29L-06 19 55698954 55698954 G A PTPRH Silent p.G831G 0.24 TCGA-EE-A29L-06 19 55708578 55708578 C T PTPRH Missense_Mutation p.E633K 0.22 benign(0.123) TCGA-EE-A29L-06 19 55816264 55816264 C T BRSK1 Missense_Mutation p.R565C 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29L-06 19 55899332 55899332 C T RPL28 Silent p.T80T 0.54 TCGA-EE-A29L-06 19 56203253 56203253 C T EPN1 Missense_Mutation p.P385L 0.19 tolerated(0.06) benign(0.002) TCGA-EE-A29L-06 19 56321216 56321216 G A NLRP11 Missense_Mutation p.P254S 0.47 tolerated(0.44) benign(0.325) TCGA-EE-A29L-06 19 56370415 56370415 G A NLRP4 Silent p.A552A 0.56 TCGA-EE-A29L-06 19 56382317 56382317 C T NLRP4 Missense_Mutation p.L827F 0.28 tolerated(0.06) probably_damaging(0.974) TCGA-EE-A29L-06 19 56392979 56392979 G A NLRP4 3'UTR 0.29 TCGA-EE-A29L-06 19 56733493 56733493 T A ZSCAN5A Silent p.G314G 0.28 TCGA-EE-A29L-06 19 56896082 56896082 G A ZNF582 Missense_Mutation p.A235V 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A29L-06 19 57089701 57089701 C T ZNF470 Missense_Mutation p.S635F 0.21 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A29L-06 19 57326440 57326440 C T PEG3 Missense_Mutation p.D1124N 0.37 tolerated(0.14) probably_damaging(0.959) TCGA-EE-A29L-06 19 57328555 57328555 C T PEG3 Missense_Mutation p.G419S 0.19 tolerated(0.18) benign(0.223) TCGA-EE-A29L-06 19 57868827 57868827 T C ZNF304 Silent p.P530P 0.41 TCGA-EE-A29L-06 19 58004510 58004510 C T ZNF419 Silent p.A196A 0.28 TCGA-EE-A29L-06 19 58189571 58189571 G A ZSCAN4 Silent p.S200S 0.34 TCGA-EE-A29L-06 19 58437893 58437893 G A ZNF418 Silent p.S552S 0.23 TCGA-EE-A29L-06 19 5844594 5844594 G A FUT3 Missense_Mutation p.P86L 0.20 tolerated(0.23) possibly_damaging(0.903) TCGA-EE-A29L-06 19 58490821 58490821 G A ZNF606 Silent p.F409F 0.32 TCGA-EE-A29L-06 19 58500040 58500040 C T ZNF606 Nonsense_Mutation p.W76* 0.22 TCGA-EE-A29L-06 19 58988735 58988735 G A ZNF446 Silent p.L50L 0.51 TCGA-EE-A29L-06 19 59028057 59028057 G A ZBTB45 Silent p.P328P 0.25 TCGA-EE-A29L-06 19 6312178 6312178 G A ACER1 Missense_Mutation p.S111F 0.47 deleterious(0.04) possibly_damaging(0.722) TCGA-EE-A29L-06 19 6468914 6468914 G T DENND1C Silent p.L486L 0.32 TCGA-EE-A29L-06 19 6707818 6707818 C T C3 Silent p.Q656Q 0.22 TCGA-EE-A29L-06 19 7809832 7809832 C T CD209 Missense_Mutation p.E299K 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29L-06 19 7912715 7912715 C T EVI5L Silent p.L79L 0.29 TCGA-EE-A29L-06 19 8176551 8176551 C T FBN3 Silent p.G1355G 0.59 TCGA-EE-A29L-06 19 8431165 8431165 A T ANGPTL4 Missense_Mutation p.Q170L 0.53 tolerated(0.12) benign(0.269) TCGA-EE-A29L-06 19 8538575 8538575 G T HNRNPM Missense_Mutation p.G342V 0.40 deleterious(0) possibly_damaging(0.621) TCGA-EE-A29L-06 19 8841430 8841430 C T OR2Z1 Silent p.L14L 0.13 TCGA-EE-A29L-06 19 8976641 8976641 G A MUC16 Missense_Mutation p.P14112L 0.50 probably_damaging(0.996) TCGA-EE-A29L-06 19 9024985 9024985 C T MUC16 Missense_Mutation p.G12293R 0.24 possibly_damaging(0.763) TCGA-EE-A29L-06 19 9046168 9046168 A C MUC16 Silent p.S11821S 0.48 TCGA-EE-A29L-06 19 9048344 9048344 C T MUC16 Missense_Mutation p.G11096E 0.44 benign(0.007) TCGA-EE-A29L-06 19 9059164 9059164 C T MUC16 Missense_Mutation p.E9428K 0.15 unknown(0) TCGA-EE-A29L-06 19 9062912 9062912 A C MUC16 Silent p.T8178T 0.23 TCGA-EE-A29L-06 19 9067341 9067341 G A MUC16 Missense_Mutation p.P6702L 0.19 unknown(0) TCGA-EE-A29L-06 19 9068288 9068288 G A MUC16 Silent p.V6386V 0.19 TCGA-EE-A29L-06 19 9068704 9068704 G A MUC16 Missense_Mutation p.L6248F 0.53 unknown(0) TCGA-EE-A29L-06 19 9072482 9072482 A T MUC16 Silent p.T4988T 0.37 TCGA-EE-A29L-06 19 9074153 9074153 G A MUC16 Silent p.L4431L 0.19 TCGA-EE-A29L-06 19 9077737 9077737 G A MUC16 Missense_Mutation p.P3237S 0.25 unknown(0) TCGA-EE-A29L-06 19 9085246 9085246 G A MUC16 Missense_Mutation p.S2190F 0.24 unknown(0) TCGA-EE-A29L-06 19 9085456 9085456 G A MUC16 Missense_Mutation p.T2120I 0.53 unknown(0) TCGA-EE-A29L-06 19 9086274 9086274 G A MUC16 Silent p.L1847L 0.17 TCGA-EE-A29L-06 19 9091626 9091626 G T MUC16 Silent p.T63T 0.16 TCGA-EE-A29L-06 19 9406533 9406533 G A ZNF699 Missense_Mutation p.S516F 0.23 deleterious(0) possibly_damaging(0.731) TCGA-EE-A29L-06 19 9577548 9577548 G A ZNF560 Missense_Mutation p.S692F 0.23 tolerated(0.21) possibly_damaging(0.831) TCGA-EE-A29L-06 1 101186048 101186048 C T VCAM1 Silent p.I27I 0.12 TCGA-EE-A29L-06 1 101705750 101705750 T C S1PR1 3'UTR 0.43 TCGA-EE-A29L-06 1 103427757 103427757 C A COL11A1 Missense_Mutation p.G1030V 0.36 unknown(0) TCGA-EE-A29L-06 1 104162197 104162197 G A AMY2A Missense_Mutation p.G179S 0.65 tolerated(0.18) benign(0.094) TCGA-EE-A29L-06 1 107937869 107937869 G A NTNG1 Silent p.G327G 0.11 TCGA-EE-A29L-06 1 108023381 108023381 C T NTNG1 Silent p.G513G 0.39 TCGA-EE-A29L-06 1 108417609 108417609 G A VAV3 Missense_Mutation p.L79F 0.66 deleterious(0) probably_damaging(0.981) TCGA-EE-A29L-06 1 110301041 110301041 G A EPS8L3 Missense_Mutation p.S206F 0.17 deleterious(0) probably_damaging(0.922) TCGA-EE-A29L-06 1 110465890 110465890 C T CSF1 Missense_Mutation p.A216V 0.62 tolerated(0.28) benign(0.136) TCGA-EE-A29L-06 1 11087255 11087255 C T MASP2 Missense_Mutation p.R583K 0.56 tolerated(0.44) benign(0.261) TCGA-EE-A29L-06 1 111730783 111730783 C T DENND2D Missense_Mutation p.E437K 0.18 deleterious(0) probably_damaging(0.981) TCGA-EE-A29L-06 1 111862931 111862931 G A CHIA Missense_Mutation p.G425E 0.12 tolerated(0.34) benign(0.027) TCGA-EE-A29L-06 1 111998710 111998710 C T ATP5F1 Missense_Mutation p.P76S 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 1 114641753 114641753 G A SYT6 Nonsense_Mutation p.Q358* 0.16 TCGA-EE-A29L-06 1 114680414 114680414 G C SYT6 Silent p.A173A 0.13 TCGA-EE-A29L-06 1 115130354 115130354 C T DENND2C Missense_Mutation p.R884Q 0.13 deleterious(0) possibly_damaging(0.765) TCGA-EE-A29L-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.68 deleterious(0) benign(0.109) TCGA-EE-A29L-06 1 11561420 11561420 T C PTCHD2 Missense_Mutation p.L124P 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29L-06 1 11579867 11579867 C T PTCHD2 Silent p.I710I 0.21 TCGA-EE-A29L-06 1 116675916 116675916 C T MAB21L3 Missense_Mutation p.P340L 0.14 tolerated(0.11) benign(0.105) TCGA-EE-A29L-06 1 117156446 117156446 G A IGSF3 Missense_Mutation p.S258L 0.15 deleterious(0) benign(0.064) TCGA-EE-A29L-06 1 118624093 118624093 C T SPAG17 Silent p.Q645Q 0.17 TCGA-EE-A29L-06 1 119576822 119576822 G A WARS2 Missense_Mutation p.P177L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 120930086 120930086 C T FCGR1B Missense_Mutation p.G172E 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29L-06 1 12401849 12401849 C T VPS13D Missense_Mutation p.T2880I 0.19 benign(0.174) TCGA-EE-A29L-06 1 12711266 12711266 C T AADACL4 Missense_Mutation p.P98L 0.22 deleterious(0.03) benign(0.423) TCGA-EE-A29L-06 1 12939698 12939698 T G PRAMEF4 Missense_Mutation p.Q368H 0.20 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A29L-06 1 12954770 12954770 G A PRAMEF10 Silent p.I171I 0.49 TCGA-EE-A29L-06 1 13001128 13001128 C T PRAMEF6 Silent p.L185L 0.22 TCGA-EE-A29L-06 1 13497762 13497762 C T PRAMEF16 Silent p.I353I 0.85 TCGA-EE-A29L-06 1 13716832 13716832 G A PRAMEF17 Missense_Mutation p.D107N 0.15 tolerated(1) possibly_damaging(0.514) TCGA-EE-A29L-06 1 1403781 1403781 C T ATAD3C Silent p.S369S 0.09 TCGA-EE-A29L-06 1 14107394 14107394 C T PRDM2 Missense_Mutation p.P1035L 0.23 unknown(0) TCGA-EE-A29L-06 1 144852383 144852383 G A PDE4DIP Missense_Mutation p.P2354S 0.16 deleterious_low_confidence(0.03) benign(0.002) TCGA-EE-A29L-06 1 144865845 144865845 C T PDE4DIP Missense_Mutation p.R1912Q 0.15 tolerated(0.51) benign(0.006) TCGA-EE-A29L-06 1 145416978 145416978 G A HFE2 3'UTR 0.20 TCGA-EE-A29L-06 1 145473767 145473767 G A ANKRD34A Missense_Mutation p.D147N 0.26 deleterious(0.01) possibly_damaging(0.756) TCGA-EE-A29L-06 1 145580376 145580376 C T PIAS3 Intron 0.19 TCGA-EE-A29L-06 1 145581490 145581490 G A PIAS3 Missense_Mutation p.M357I 0.57 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 1 146658412 146658412 C T FMO5 3'UTR 0.16 TCGA-EE-A29L-06 1 147096628 147096628 C T BCL9 Silent p.S1383S 0.26 TCGA-EE-A29L-06 1 147380328 147380328 C T GJA8 Silent p.I82I 0.17 TCGA-EE-A29L-06 1 147381047 147381047 C T GJA8 Missense_Mutation p.S322F 0.12 deleterious(0.05) probably_damaging(1) TCGA-EE-A29L-06 1 149883442 149883442 G A SV2A Missense_Mutation p.S238L 0.12 tolerated(0.14) benign(0.036) TCGA-EE-A29L-06 1 149885275 149885275 C T SV2A Missense_Mutation p.E40K 0.13 tolerated_low_confidence(0.05) benign(0.314) TCGA-EE-A29L-06 1 149895580 149895580 G A SF3B4 Missense_Mutation p.P377S 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29L-06 1 149905813 149905813 G A MTMR11 Missense_Mutation p.P236S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 150667295 150667295 C T GOLPH3L Missense_Mutation p.R7Q 0.36 deleterious(0.02) possibly_damaging(0.806) TCGA-EE-A29L-06 1 151110192 151110192 C T SEMA6C Missense_Mutation p.G251R 0.30 deleterious(0) probably_damaging(0.984) TCGA-EE-A29L-06 1 151337081 151337081 G A SELENBP1 Missense_Mutation p.P453S 0.54 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29L-06 1 151779940 151779940 C T RORC 3'UTR 0.19 TCGA-EE-A29L-06 1 152276668 152276668 C T FLG Missense_Mutation p.G3565E 0.14 unknown(0) TCGA-EE-A29L-06 1 152282040 152282040 C T FLG Silent p.Q1774Q 0.14 TCGA-EE-A29L-06 1 152329818 152329818 C T FLG2 Silent p.R148R 0.15 TCGA-EE-A29L-06 1 152552074 152552074 C T LCE3D 3'UTR 0.17 TCGA-EE-A29L-06 1 152648570 152648570 A G LCE2C Missense_Mutation p.K27E 0.31 deleterious_low_confidence(0.05) unknown(0) TCGA-EE-A29L-06 1 152732820 152732820 C T KPRP Silent p.T252T 0.28 TCGA-EE-A29L-06 1 152882751 152882751 G A IVL Missense_Mutation p.E160K 0.17 tolerated(0.09) unknown(0) TCGA-EE-A29L-06 1 152883861 152883861 C T IVL Silent p.L530L 0.56 TCGA-EE-A29L-06 1 152975487 152975487 C T SPRR3 5'UTR 0.19 TCGA-EE-A29L-06 1 153513907 153513907 C T S100A5 5'UTR 0.13 TCGA-EE-A29L-06 1 153520175 153520175 G A S100A3 Missense_Mutation p.P97S 0.33 tolerated(0.14) benign(0.212) TCGA-EE-A29L-06 1 153659521 153659521 G A NPR1 Silent p.L631L 0.19 TCGA-EE-A29L-06 1 153665978 153665978 C T NPR1 3'UTR 0.23 TCGA-EE-A29L-06 1 154101776 154101776 T C NUP210L Missense_Mutation p.Y352C 0.15 deleterious(0.01) benign(0.043) TCGA-EE-A29L-06 1 154705510 154705510 C T KCNN3 Missense_Mutation p.G520E 0.24 deleterious(0) probably_damaging(0.982) TCGA-EE-A29L-06 1 154960577 154960577 C T FLAD1 Intron 0.58 TCGA-EE-A29L-06 1 154960578 154960578 C T FLAD1 Intron 0.58 TCGA-EE-A29L-06 1 155263375 155263375 C T PKLR Missense_Mutation p.E375K 0.70 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 1 155429669 155429669 T A ASH1L Nonsense_Mutation p.K1669* 0.15 TCGA-EE-A29L-06 1 156006680 156006680 G A UBQLN4 3'UTR 0.61 TCGA-EE-A29L-06 1 156132739 156132739 G A SEMA4A Missense_Mutation p.V330I 0.47 tolerated(0.45) benign(0.021) TCGA-EE-A29L-06 1 156269004 156269004 G A VHLL 5'UTR 0.18 TCGA-EE-A29L-06 1 156821858 156821858 G A INSRR Nonsense_Mutation p.Q255* 0.14 TCGA-EE-A29L-06 1 156824046 156824046 C T INSRR Silent p.L45L 0.14 TCGA-EE-A29L-06 1 156883701 156883701 C T PEAR1 Missense_Mutation p.P924L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 156916804 156916804 G A ARHGEF11 Missense_Mutation p.S831F 0.18 deleterious(0) possibly_damaging(0.665) TCGA-EE-A29L-06 1 15752446 15752446 C T EFHD2 Missense_Mutation p.H130Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 1 157665383 157665383 G A FCRL3 Missense_Mutation p.P383S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 157738411 157738411 A C FCRL2 Missense_Mutation p.C226G 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 15808762 15808762 C T CELA2B Missense_Mutation p.S77F 0.29 deleterious(0.03) possibly_damaging(0.465) TCGA-EE-A29L-06 1 158152903 158152903 G A CD1D Silent p.V281V 0.23 TCGA-EE-A29L-06 1 158154038 158154038 G A CD1D 3'UTR 0.19 TCGA-EE-A29L-06 1 158435611 158435611 C T OR10K1 Missense_Mutation p.S87F 0.16 tolerated(0.11) benign(0.282) TCGA-EE-A29L-06 1 158648241 158648241 G A SPTA1 Silent p.L254L 0.59 TCGA-EE-A29L-06 1 158736239 158736239 G A OR6N1 Silent p.I78I 0.42 TCGA-EE-A29L-06 1 159175916 159175916 G A DARC Silent p.K231K 0.20 TCGA-EE-A29L-06 1 159176102 159176102 C T DARC Silent p.A293A 0.54 TCGA-EE-A29L-06 1 159904552 159904552 G A IGSF9 Missense_Mutation p.S245L 0.18 tolerated(0.97) benign(0.008) TCGA-EE-A29L-06 1 160105280 160105280 G A ATP1A2 Silent p.K724K 0.15 TCGA-EE-A29L-06 1 160105660 160105660 C T ATP1A2 Silent p.S772S 0.18 TCGA-EE-A29L-06 1 160395185 160395185 G A VANGL2 3'UTR 0.16 TCGA-EE-A29L-06 1 16069534 16069534 G A TMEM82 Missense_Mutation p.E61K 0.21 tolerated(0.12) possibly_damaging(0.503) TCGA-EE-A29L-06 1 160793326 160793326 C T LY9 Missense_Mutation p.P524S 0.26 tolerated(0.16) benign(0) TCGA-EE-A29L-06 1 160797565 160797565 C T LY9 Missense_Mutation p.L643F 0.16 tolerated(0.72) unknown(0) TCGA-EE-A29L-06 1 160854650 160854650 G A ITLN1 Silent p.F6F 0.15 TCGA-EE-A29L-06 1 161018182 161018182 C T ARHGAP30 Missense_Mutation p.E877K 0.15 deleterious_low_confidence(0.02) benign(0.193) TCGA-EE-A29L-06 1 161130441 161130441 C T USP21 Missense_Mutation p.A4V 0.20 tolerated_low_confidence(0.15) probably_damaging(0.95) TCGA-EE-A29L-06 1 161163089 161163089 G A ADAMTS4 Missense_Mutation p.R609C 0.18 deleterious(0) probably_damaging(0.98) TCGA-EE-A29L-06 1 161298193 161298193 C T SDHC Missense_Mutation p.P29S 0.33 tolerated(0.12) benign(0.142) TCGA-EE-A29L-06 1 164532502 164532502 G A PBX1 Missense_Mutation p.M73I 0.15 deleterious(0) benign(0.042) TCGA-EE-A29L-06 1 164761828 164761828 G A PBX1 Silent p.E121E 0.63 TCGA-EE-A29L-06 1 165173111 165173111 G A LMX1A 3'UTR 0.40 TCGA-EE-A29L-06 1 165380213 165380213 G A RXRG Silent p.S252S 0.18 TCGA-EE-A29L-06 1 166818322 166818322 C T POGK Missense_Mutation p.P169L 0.51 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A29L-06 1 166963267 166963267 G A MAEL Missense_Mutation p.E162K 0.16 tolerated(0.63) possibly_damaging(0.591) TCGA-EE-A29L-06 1 167095448 167095448 C T DUSP27 Silent p.L360L 0.12 TCGA-EE-A29L-06 1 16721659 16721659 C T SZRD1 3'UTR 0.18 TCGA-EE-A29L-06 1 167779004 167779004 C T ADCY10 Missense_Mutation p.E1582K 0.60 tolerated(0.15) benign(0.011) TCGA-EE-A29L-06 1 169599315 169599315 C T SELP 5'UTR 0.60 TCGA-EE-A29L-06 1 171083175 171083175 G A FMO3 Missense_Mutation p.D286N 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29L-06 1 171168578 171168578 G A FMO2 Missense_Mutation p.G193E 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 1 171535487 171535487 C T PRRC2C Missense_Mutation p.S2076F 0.67 possibly_damaging(0.86) TCGA-EE-A29L-06 1 171679929 171679929 T A VAMP4 Missense_Mutation p.I64F 0.20 deleterious(0) probably_damaging(0.966) TCGA-EE-A29L-06 1 172277953 172277953 G A DNM3 Missense_Mutation p.A619T 0.13 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29L-06 1 173628299 173628299 C T ANKRD45 Missense_Mutation p.A87T 0.17 tolerated(0.07) benign(0.407) TCGA-EE-A29L-06 1 17548886 17548886 A T PADI1 Missense_Mutation p.K65M 0.17 tolerated(0.12) possibly_damaging(0.868) TCGA-EE-A29L-06 1 176525454 176525454 G A PAPPA2 5'UTR 0.34 TCGA-EE-A29L-06 1 176525557 176525557 C A PAPPA2 Silent p.S33S 0.39 TCGA-EE-A29L-06 1 17685896 17685896 C T PADI4 Missense_Mutation p.P584L 0.18 deleterious(0) probably_damaging(0.991) TCGA-EE-A29L-06 1 176903372 176903372 C T ASTN1 Missense_Mutation p.G863S 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 177249834 177249834 G A BRINP2 Missense_Mutation p.D508N 0.49 deleterious(0) possibly_damaging(0.82) TCGA-EE-A29L-06 1 179414189 179414189 G A AXDND1 Missense_Mutation p.E550K 0.57 tolerated(0.24) benign(0.176) TCGA-EE-A29L-06 1 181549846 181549846 C T CACNA1E Silent p.I295I 0.21 TCGA-EE-A29L-06 1 181702848 181702848 C T CACNA1E Missense_Mutation p.P1075L 0.13 deleterious(0.04) benign(0.02) TCGA-EE-A29L-06 1 181726091 181726091 G A CACNA1E Silent p.E1386E 0.25 TCGA-EE-A29L-06 1 181762920 181762920 G A CACNA1E Silent p.V2006V 0.41 TCGA-EE-A29L-06 1 181767489 181767489 G A CACNA1E Missense_Mutation p.R2154K 0.13 tolerated(0.07) possibly_damaging(0.745) TCGA-EE-A29L-06 1 181767716 181767716 G A CACNA1E Missense_Mutation p.E2230K 0.31 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A29L-06 1 182908376 182908376 C T SHCBP1L Nonsense_Mutation p.W337* 0.55 TCGA-EE-A29L-06 1 182909513 182909513 C T SHCBP1L Missense_Mutation p.G241R 0.19 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A29L-06 1 183093967 183093967 T G LAMC1 Missense_Mutation p.F868C 0.39 deleterious(0) probably_damaging(0.994) TCGA-EE-A29L-06 1 183387403 183387403 G A NMNAT2 5'UTR 0.22 TCGA-EE-A29L-06 1 183938538 183938538 G A COLGALT2 Missense_Mutation p.P233S 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A29L-06 1 186014931 186014931 A G HMCN1 Missense_Mutation p.K2139R 0.52 probably_damaging(0.994) TCGA-EE-A29L-06 1 186043883 186043883 C T HMCN1 Missense_Mutation p.S2717F 0.30 possibly_damaging(0.639) TCGA-EE-A29L-06 1 186266007 186266007 G A PRG4 5'UTR 0.52 TCGA-EE-A29L-06 1 186294972 186294972 A G TPR Silent p.T2012T 0.51 TCGA-EE-A29L-06 1 186645797 186645797 C T PTGS2 Missense_Mutation p.E258K 0.15 tolerated(0.8) benign(0.001) TCGA-EE-A29L-06 1 18692034 18692034 C T IGSF21 Silent p.F286F 0.39 TCGA-EE-A29L-06 1 190067075 190067075 C T BRINP3 3'UTR 0.17 TCGA-EE-A29L-06 1 190067725 190067725 G A BRINP3 Missense_Mutation p.P575L 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 1 196205198 196205198 C T KCNT2 Missense_Mutation p.E1072K 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29L-06 1 196448350 196448350 T C KCNT2 Missense_Mutation p.S115G 0.15 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A29L-06 1 196642210 196642210 C T CFH Missense_Mutation p.P54L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 196706692 196706692 C T CFH Missense_Mutation p.T895I 0.16 tolerated(0.07) possibly_damaging(0.668) TCGA-EE-A29L-06 1 197111575 197111575 G A ASPM Missense_Mutation p.H603Y 0.14 tolerated(0.16) benign(0.157) TCGA-EE-A29L-06 1 197297974 197297974 G A CRB1 Missense_Mutation p.D165N 0.14 tolerated(0.12) possibly_damaging(0.521) TCGA-EE-A29L-06 1 197704718 197704718 G A DENND1B Intron 0.13 TCGA-EE-A29L-06 1 198498223 198498223 T C ATP6V1G3 Silent p.L57L 0.15 TCGA-EE-A29L-06 1 200143153 200143153 C T NR5A2 Silent p.L481L 0.21 TCGA-EE-A29L-06 1 200957646 200957646 C T KIF21B Missense_Mutation p.E1109K 0.20 tolerated(0.09) probably_damaging(0.986) TCGA-EE-A29L-06 1 200972830 200972830 G A KIF21B Missense_Mutation p.R366W 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 1 201043666 201043666 C T CACNA1S Silent p.K677K 0.14 TCGA-EE-A29L-06 1 201294069 201294069 G A PKP1 Missense_Mutation p.G633E 0.13 deleterious(0.01) possibly_damaging(0.776) TCGA-EE-A29L-06 1 201384368 201384368 G A TNNI1 Silent p.I10I 0.16 TCGA-EE-A29L-06 1 201786325 201786325 C T NAV1 Missense_Mutation p.P1817L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 1 202287144 202287144 C T LGR6 Silent p.I571I 0.15 TCGA-EE-A29L-06 1 202724528 202724528 G A KDM5B Missense_Mutation p.S470F 0.14 deleterious(0) probably_damaging(0.966) TCGA-EE-A29L-06 1 202861593 202861593 G A KLHL12 3'UTR 0.54 TCGA-EE-A29L-06 1 203024737 203024737 C T PPFIA4 Silent p.S163S 0.24 TCGA-EE-A29L-06 1 203054895 203054895 G A MYOG Silent p.C65C 0.18 TCGA-EE-A29L-06 1 203743613 203743613 G A LAX1 Missense_Mutation p.C334Y 0.34 tolerated(1) benign(0.26) TCGA-EE-A29L-06 1 203830734 203830734 C T SNRPE 5'Flank 0.21 TCGA-EE-A29L-06 1 204128574 204128574 G A REN Silent p.I214I 0.18 TCGA-EE-A29L-06 1 205116758 205116758 G A DSTYK Silent p.L906L 0.24 TCGA-EE-A29L-06 1 205350880 205350880 C T LEMD1 Missense_Mutation p.G151D 0.19 tolerated(0.36) benign(0.013) TCGA-EE-A29L-06 1 205499810 205499810 G A CDK18 Missense_Mutation p.R486Q 0.18 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29L-06 1 205500518 205500518 C T CDK18 3'UTR 0.14 TCGA-EE-A29L-06 1 205897138 205897138 C T SLC26A9 Silent p.K331K 0.09 TCGA-EE-A29L-06 1 206905044 206905044 G A MAPKAPK2 Missense_Mutation p.E318K 0.18 tolerated(0.06) benign(0.061) TCGA-EE-A29L-06 1 207039325 207039325 G A IL20 Missense_Mutation p.R43Q 0.28 tolerated(0.38) benign(0.061) TCGA-EE-A29L-06 1 207078348 207078348 G A FAIM3 3'UTR 0.12 TCGA-EE-A29L-06 1 207105058 207105058 C T PIGR Missense_Mutation p.A700T 0.21 tolerated(0.08) benign(0.327) TCGA-EE-A29L-06 1 207133109 207133109 G A FCAMR Silent p.T496T 0.18 TCGA-EE-A29L-06 1 207741198 207741198 C T CR1 Missense_Mutation p.P1328S 0.30 tolerated(0.8) benign(0.207) TCGA-EE-A29L-06 1 208315790 208315790 G A PLXNA2 Missense_Mutation p.P464S 0.21 tolerated(0.98) benign(0.025) TCGA-EE-A29L-06 1 209796966 209796966 C T LAMB3 Missense_Mutation p.E748K 0.17 tolerated(0.18) benign(0.094) TCGA-EE-A29L-06 1 209935880 209935880 A G TRAF3IP3 Silent p.E122E 0.14 TCGA-EE-A29L-06 1 21036224 21036224 C T KIF17 Nonsense_Mutation p.W193* 0.19 TCGA-EE-A29L-06 1 210970967 210970967 C T KCNH1 Missense_Mutation p.V600M 0.14 deleterious(0.03) possibly_damaging(0.606) TCGA-EE-A29L-06 1 21103228 21103228 G A HP1BP3 Missense_Mutation p.S71L 0.20 deleterious(0) possibly_damaging(0.879) TCGA-EE-A29L-06 1 211192539 211192539 G A KCNH1 Silent p.P206P 0.57 TCGA-EE-A29L-06 1 212558705 212558705 G A TMEM206 Missense_Mutation p.P197S 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-EE-A29L-06 1 214557011 214557019 CTCCCGGAG - PTPN14 In_Frame_Del p.L727_E729del 0.20 TCGA-EE-A29L-06 1 21548330 21548330 G A ECE1 Silent p.Y682Y 0.20 TCGA-EE-A29L-06 1 215793804 215793804 C T KCTD3 Silent p.F764F 0.13 TCGA-EE-A29L-06 1 215933013 215933013 C T USH2A Silent p.E3740E 0.12 TCGA-EE-A29L-06 1 216073442 216073442 C T USH2A Nonsense_Mutation p.W2523* 0.14 TCGA-EE-A29L-06 1 218480849 218480849 T G RRP15 Missense_Mutation p.S194A 0.12 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A29L-06 1 21940136 21940136 A C RAP1GAP Silent p.V217V 0.19 TCGA-EE-A29L-06 1 220174493 220174493 G C EPRS Missense_Mutation p.A723G 0.28 tolerated(0.17) benign(0.027) TCGA-EE-A29L-06 1 220291300 220291300 A G IARS2 Intron 0.27 TCGA-EE-A29L-06 1 221913007 221913007 A C DUSP10 Nonsense_Mutation p.L27* 0.17 TCGA-EE-A29L-06 1 221913008 221913008 A C DUSP10 Missense_Mutation p.L27V 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.754) TCGA-EE-A29L-06 1 22310198 22310198 C T CELA3B Missense_Mutation p.A125V 0.20 deleterious(0) possibly_damaging(0.9) TCGA-EE-A29L-06 1 223568257 223568257 G A C1orf65 Silent p.K480K 0.46 TCGA-EE-A29L-06 1 226349293 226349293 G A ACBD3 Nonsense_Mutation p.R223* 0.14 TCGA-EE-A29L-06 1 22835087 22835087 T C ZBTB40 Missense_Mutation p.V521A 0.36 tolerated(0.72) unknown(0) TCGA-EE-A29L-06 1 228363208 228363208 C T IBA57 Silent p.S355S 0.17 TCGA-EE-A29L-06 1 228402506 228402506 C T OBSCN Missense_Mutation p.P512L 0.17 possibly_damaging(0.528) TCGA-EE-A29L-06 1 228456260 228456260 C T OBSCN Missense_Mutation p.P1815S 0.48 benign(0.409) TCGA-EE-A29L-06 1 228548203 228548203 C T OBSCN Intron 0.53 TCGA-EE-A29L-06 1 228596903 228596903 C T TRIM17 Missense_Mutation p.G285R 0.20 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A29L-06 1 228879431 228879431 G A RHOU Missense_Mutation p.D241N 0.19 tolerated(0.06) benign(0.037) TCGA-EE-A29L-06 1 229773366 229773366 G T URB2 Silent p.G1002G 0.42 TCGA-EE-A29L-06 1 230486707 230486707 G A PGBD5 Silent p.I228I 0.20 TCGA-EE-A29L-06 1 230883448 230883448 G A CAPN9 Missense_Mutation p.R69Q 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 231060654 231060654 G A TTC13 Nonsense_Mutation p.R552* 0.23 TCGA-EE-A29L-06 1 232577037 232577037 G A SIPA1L2 Silent p.H1214H 0.19 TCGA-EE-A29L-06 1 234445036 234445036 C T SLC35F3 Silent p.I266I 0.63 TCGA-EE-A29L-06 1 23768717 23768717 G A ASAP3 Silent p.F211F 0.12 TCGA-EE-A29L-06 1 237777673 237777673 C T RYR2 Missense_Mutation p.P1749S 0.10 possibly_damaging(0.665) TCGA-EE-A29L-06 1 237969439 237969439 C T RYR2 Silent p.S4718S 0.09 TCGA-EE-A29L-06 1 240255747 240255747 C T FMN2 Missense_Mutation p.S113F 0.19 unknown(0) TCGA-EE-A29L-06 1 242042534 242042534 C T EXO1 Silent p.P666P 0.23 TCGA-EE-A29L-06 1 24408641 24408641 G A MYOM3 Silent p.N710N 0.22 TCGA-EE-A29L-06 1 245530267 245530267 C T KIF26B Silent p.I199I 0.33 TCGA-EE-A29L-06 1 24663621 24663621 G A GRHL3 Silent p.E222E 0.23 TCGA-EE-A29L-06 1 24663622 24663622 G A GRHL3 Missense_Mutation p.D223N 0.22 tolerated(0.12) benign(0.186) TCGA-EE-A29L-06 1 247655219 247655219 C T OR2W5 RNA 0.59 TCGA-EE-A29L-06 1 247712456 247712456 G A GCSAML 5'UTR 0.56 TCGA-EE-A29L-06 1 248039361 248039361 G A TRIM58 Missense_Mutation p.G344E 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 1 248112603 248112603 G A OR2L8 Nonsense_Mutation p.W148* 0.33 TCGA-EE-A29L-06 1 248263173 248263173 C T OR2L13 Missense_Mutation p.P166S 0.22 tolerated(0.1) benign(0.219) TCGA-EE-A29L-06 1 248263646 248263646 C T OR2L13 3'UTR 0.50 TCGA-EE-A29L-06 1 248343329 248343329 C T OR2M2 Silent p.L14L 0.20 TCGA-EE-A29L-06 1 248487377 248487377 G A OR2M7 Missense_Mutation p.S165F 0.33 deleterious(0.02) benign(0.156) TCGA-EE-A29L-06 1 248637552 248637552 G A OR2T3 Missense_Mutation p.D301N 0.05 deleterious(0.04) possibly_damaging(0.751) TCGA-EE-A29L-06 1 248685470 248685470 G A OR2G6 Missense_Mutation p.D175N 0.23 tolerated(0.18) benign(0.25) TCGA-EE-A29L-06 1 26751877 26751877 G A LIN28A Silent p.L104L 0.21 TCGA-EE-A29L-06 1 26900863 26900863 C T RPS6KA1 3'Flank 0.58 TCGA-EE-A29L-06 1 28833909 28833909 C T SNORA73B 5'Flank 0.35 TCGA-EE-A29L-06 1 29338416 29338416 C T EPB41 Missense_Mutation p.R276C 0.35 deleterious(0) possibly_damaging(0.857) TCGA-EE-A29L-06 1 31230664 31230664 G A LAPTM5 5'UTR 0.17 TCGA-EE-A29L-06 1 32164197 32164197 G A COL16A1 Missense_Mutation p.P93S 0.22 unknown(0) TCGA-EE-A29L-06 1 33236042 33236042 C T KIAA1522 Missense_Mutation p.S421F 0.43 deleterious(0) unknown(0) TCGA-EE-A29L-06 1 3328303 3328303 C T PRDM16 Silent p.F514F 0.19 TCGA-EE-A29L-06 1 3342733 3342733 C T PRDM16 Silent p.I1076I 0.12 TCGA-EE-A29L-06 1 33958864 33958864 C T ZSCAN20 Missense_Mutation p.R508C 0.51 deleterious(0) probably_damaging(0.976) TCGA-EE-A29L-06 1 34090665 34090665 G A CSMD2 Missense_Mutation p.A1789V 0.42 tolerated(1) benign(0.01) TCGA-EE-A29L-06 1 34180194 34180194 C T CSMD2 Silent p.R1093R 0.42 TCGA-EE-A29L-06 1 34663286 34663286 G A C1orf94 Missense_Mutation p.D261N 0.21 deleterious(0) benign(0.001) TCGA-EE-A29L-06 1 34667830 34667830 C T C1orf94 Silent p.F472F 0.24 TCGA-EE-A29L-06 1 35223641 35223641 C T GJB5 Missense_Mutation p.S237F 0.33 tolerated(0.06) benign(0.001) TCGA-EE-A29L-06 1 35260362 35260362 C T GJA4 Missense_Mutation p.P183L 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 1 35370431 35370431 T G DLGAP3 Missense_Mutation p.H185P 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A29L-06 1 35972511 35972511 G A KIAA0319L Missense_Mutation p.S123F 0.21 tolerated(0.36) benign(0.395) TCGA-EE-A29L-06 1 36359751 36359751 C T AGO1 Missense_Mutation p.R255C 0.45 deleterious(0) possibly_damaging(0.766) TCGA-EE-A29L-06 1 36521258 36521258 C T AGO3 Missense_Mutation p.S832L 0.58 deleterious(0) possibly_damaging(0.792) TCGA-EE-A29L-06 1 36564630 36564630 C T COL8A2 Missense_Mutation p.A218T 0.24 tolerated(0.57) unknown(0) TCGA-EE-A29L-06 1 37270690 37270690 G A GRIK3 Silent p.I821I 0.24 TCGA-EE-A29L-06 1 38185215 38185215 T C EPHA10 Missense_Mutation p.H876R 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29L-06 1 39549961 39549961 G A MACF1 Missense_Mutation p.R24Q 0.22 benign(0.008) TCGA-EE-A29L-06 1 39920726 39920726 C T MACF1 Missense_Mutation p.P4952L 0.25 probably_damaging(0.992) TCGA-EE-A29L-06 1 41494270 41494270 G A SCMH1 Silent p.L615L 0.23 TCGA-EE-A29L-06 1 42050037 42050037 G A HIVEP3 Silent p.L144L 0.48 TCGA-EE-A29L-06 1 42628492 42628492 G A GUCA2A 3'UTR 0.53 TCGA-EE-A29L-06 1 43621918 43621918 G A FAM183A Silent p.R113R 0.17 TCGA-EE-A29L-06 1 43748510 43748510 C T C1orf210 Silent p.Q96Q 0.25 TCGA-EE-A29L-06 1 43908610 43908610 C T SZT2 Missense_Mutation p.P2701S 0.50 deleterious(0.02) benign(0.003) TCGA-EE-A29L-06 1 44595390 44595390 G A KLF17 Silent p.G149G 0.47 TCGA-EE-A29L-06 1 44878091 44878091 C T RNF220 Missense_Mutation p.P108S 0.26 deleterious(0.03) benign(0.388) TCGA-EE-A29L-06 1 45820995 45820995 G A TESK2 Missense_Mutation p.H174Y 0.22 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 1 47080744 47080744 T C MOB3C Missense_Mutation p.K2R 0.39 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A29L-06 1 47080746 47080746 C T MOB3C Translation_Start_Site p.M1? 0.40 tolerated_low_confidence(0.09) benign(0) TCGA-EE-A29L-06 1 47534324 47534324 C T CYP4Z1 Missense_Mutation p.H70Y 0.18 tolerated(0.12) benign(0.033) TCGA-EE-A29L-06 1 47882374 47882374 C T FOXE3 Silent p.F129F 0.18 TCGA-EE-A29L-06 1 48764525 48764525 C T SPATA6 Missense_Mutation p.G443S 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29L-06 1 52902464 52902464 C T ZCCHC11 Silent p.E1375E 0.45 TCGA-EE-A29L-06 1 53153603 53153603 G A COA7 Missense_Mutation p.P162L 0.58 deleterious(0.03) benign(0.297) TCGA-EE-A29L-06 1 53153604 53153604 G A COA7 Missense_Mutation p.P162S 0.59 tolerated(0.08) benign(0.217) TCGA-EE-A29L-06 1 53553855 53553855 G A SLC1A7 Silent p.I503I 0.26 TCGA-EE-A29L-06 1 53726184 53726184 T C LRP8 Missense_Mutation p.N670D 0.50 tolerated(0.1) probably_damaging(0.983) TCGA-EE-A29L-06 1 53927229 53927229 C T DMRTB1 Missense_Mutation p.P221S 0.24 tolerated(0.06) possibly_damaging(0.539) TCGA-EE-A29L-06 1 53995472 53995472 G T GLIS1 Missense_Mutation p.L317I 0.22 tolerated(0.08) benign(0.396) TCGA-EE-A29L-06 1 54060405 54060405 G A GLIS1 Silent p.L57L 0.56 TCGA-EE-A29L-06 1 54474787 54474787 G A LDLRAD1 Silent p.P162P 0.21 TCGA-EE-A29L-06 1 54610386 54610386 G A CDCP2 Silent p.I60I 0.48 TCGA-EE-A29L-06 1 54618665 54618665 G A CDCP2 5'UTR 0.35 TCGA-EE-A29L-06 1 55166875 55166875 G A MROH7 Silent p.G1055G 0.49 TCGA-EE-A29L-06 1 55474182 55474182 G A BSND Missense_Mutation p.D282N 0.60 tolerated(0.22) benign(0.028) TCGA-EE-A29L-06 1 57206409 57206409 C T C1orf168 Missense_Mutation p.R555K 0.30 tolerated(0.53) benign(0.056) TCGA-EE-A29L-06 1 57252873 57252873 C T C1orf168 Missense_Mutation p.E310K 0.53 tolerated(0.69) benign(0.013) TCGA-EE-A29L-06 1 57257903 57257903 G A C1orf168 Missense_Mutation p.P195S 0.21 tolerated(0.07) possibly_damaging(0.819) TCGA-EE-A29L-06 1 57347218 57347218 C T C8A Nonsense_Mutation p.R189* 0.37 TCGA-EE-A29L-06 1 57347252 57347252 G A C8A Missense_Mutation p.G200E 0.14 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A29L-06 1 57397489 57397489 G A C8B Missense_Mutation p.R539W 0.48 deleterious(0) probably_damaging(0.91) TCGA-EE-A29L-06 1 60302572 60302572 C T HOOK1 Missense_Mutation p.P168S 0.23 tolerated(0.52) benign(0.007) TCGA-EE-A29L-06 1 61553989 61553989 G A NFIA Missense_Mutation p.E111K 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 1 62739788 62739788 C T KANK4 Missense_Mutation p.E330K 0.17 tolerated(0.08) benign(0.14) TCGA-EE-A29L-06 1 66833690 66833690 C T PDE4B Missense_Mutation p.T535M 0.18 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A29L-06 1 67340619 67340619 A T WDR78 Missense_Mutation p.D215E 0.39 tolerated(0.16) benign(0.047) TCGA-EE-A29L-06 1 67896100 67896100 C T SERBP1 5'Flank 0.38 TCGA-EE-A29L-06 1 68896760 68896760 C T RPE65 Missense_Mutation p.E480K 0.48 tolerated(0.05) benign(0.006) TCGA-EE-A29L-06 1 70488833 70488833 G A LRRC7 Missense_Mutation p.E486K 0.38 tolerated(0.2) benign(0.006) TCGA-EE-A29L-06 1 70505081 70505081 C T LRRC7 Missense_Mutation p.R1154C 0.30 deleterious(0) possibly_damaging(0.591) TCGA-EE-A29L-06 1 75036972 75036972 G A C1orf173 Silent p.F1474F 0.46 TCGA-EE-A29L-06 1 75037352 75037352 C T C1orf173 Missense_Mutation p.E1348K 0.44 tolerated(0.87) benign(0.106) TCGA-EE-A29L-06 1 75055375 75055375 C T C1orf173 Missense_Mutation p.E706K 0.21 tolerated(0.21) benign(0.287) TCGA-EE-A29L-06 1 75065431 75065431 C T C1orf173 Silent p.V558V 0.58 TCGA-EE-A29L-06 1 75188903 75188903 G A CRYZ Missense_Mutation p.R55C 0.49 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A29L-06 1 76878020 76878020 C T ST6GALNAC3 Missense_Mutation p.P181S 0.26 possibly_damaging(0.859) TCGA-EE-A29L-06 1 77510080 77510080 G A ST6GALNAC5 Silent p.R151R 0.47 TCGA-EE-A29L-06 1 7797056 7797056 C T CAMTA1 Missense_Mutation p.S1110F 0.10 deleterious(0) possibly_damaging(0.794) TCGA-EE-A29L-06 1 79387305 79387305 G A ELTD1 Missense_Mutation p.P417L 0.30 tolerated(0.22) benign(0.006) TCGA-EE-A29L-06 1 79470843 79470843 G A ELTD1 Silent p.L28L 0.55 TCGA-EE-A29L-06 1 8399557 8399557 C T SLC45A1 Silent p.I593I 0.42 TCGA-EE-A29L-06 1 84386789 84386789 G A TTLL7 Nonsense_Mutation p.R449* 0.18 TCGA-EE-A29L-06 1 86557993 86557993 C T COL24A1 Missense_Mutation p.G537E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 888564 888564 G A NOC2L Silent p.P331P 0.19 TCGA-EE-A29L-06 1 89520397 89520397 C T GBP1 Missense_Mutation p.E545K 0.12 deleterious(0.02) possibly_damaging(0.484) TCGA-EE-A29L-06 1 89520398 89520398 T G GBP1 Missense_Mutation p.K544N 0.11 tolerated(0.37) benign(0.108) TCGA-EE-A29L-06 1 89890038 89890038 C T GBP1P1 Intron 0.21 TCGA-EE-A29L-06 1 9083116 9083116 C T SLC2A7 Missense_Mutation p.E58K 0.42 tolerated(0.15) benign(0.015) TCGA-EE-A29L-06 1 92441903 92441903 G A BRDT Missense_Mutation p.E176K 0.33 tolerated(0.66) benign(0.001) TCGA-EE-A29L-06 1 93316481 93316481 C T FAM69A Missense_Mutation p.G74E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 1 94458778 94458778 G A ABCA4 3'UTR 0.08 TCGA-EE-A29L-06 1 94578619 94578619 G A ABCA4 Missense_Mutation p.R24C 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 1 94668201 94668201 G A ARHGAP29 Missense_Mutation p.R348C 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29L-06 1 949739 949739 G A ISG15 Missense_Mutation p.E127K 0.21 tolerated(0.1) benign(0.061) TCGA-EE-A29L-06 1 95307626 95307626 A C SLC44A3 Missense_Mutation p.E277D 0.15 tolerated(0.07) possibly_damaging(0.885) TCGA-EE-A29L-06 20 13098255 13098255 C T SPTLC3 Silent p.G345G 0.62 TCGA-EE-A29L-06 20 1459197 1459197 C A SIRPB2 Missense_Mutation p.L169F 0.09 tolerated(0.27) possibly_damaging(0.877) TCGA-EE-A29L-06 20 1517841 1517841 G A SIRPD Silent p.F179F 0.24 TCGA-EE-A29L-06 20 1551667 1551667 C T SIRPB1 Missense_Mutation p.G290R 0.23 tolerated(0.07) benign(0.357) TCGA-EE-A29L-06 20 1617025 1617025 C T SIRPG Missense_Mutation p.G186E 0.29 deleterious(0.03) possibly_damaging(0.792) TCGA-EE-A29L-06 20 16347970 16347971 GT A KIF16B Frame_Shift_Del p.K1333Nfs*53 0.16 TCGA-EE-A29L-06 20 19566125 19566125 C T SLC24A3 Silent p.I183I 0.27 TCGA-EE-A29L-06 20 1961157 1961157 C T PDYN Missense_Mutation p.G193R 0.70 tolerated(0.15) possibly_damaging(0.55) TCGA-EE-A29L-06 20 23065861 23065861 C T CD93 Silent p.G323G 0.30 TCGA-EE-A29L-06 20 238422 238422 G A DEFB132 Translation_Start_Site p.M1? 0.32 deleterious(0) benign(0.107) TCGA-EE-A29L-06 20 23965943 23965943 G A GGTLC1 Silent p.F196F 0.28 TCGA-EE-A29L-06 20 23966376 23966376 C T GGTLC1 Nonsense_Mutation p.W153* 0.28 TCGA-EE-A29L-06 20 2636701 2636701 C T NOP56 Intron 0.22 TCGA-EE-A29L-06 20 30433274 30433274 G A FOXS1 Silent p.I24I 0.28 TCGA-EE-A29L-06 20 30533577 30533577 G A PDRG1 3'UTR 0.20 TCGA-EE-A29L-06 20 30585110 30585110 G A XKR7 Silent p.K530K 0.74 TCGA-EE-A29L-06 20 31041104 31041104 C T C20orf112 Intron 0.63 TCGA-EE-A29L-06 20 31394046 31394046 C T DNMT3B Missense_Mutation p.S778L 0.21 deleterious(0.04) probably_damaging(0.974) TCGA-EE-A29L-06 20 31660574 31660574 C T BPIFB3 Missense_Mutation p.S459F 0.21 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A29L-06 20 31812911 31812911 G A BPIFA3 Missense_Mutation p.D132N 0.15 tolerated(1) benign(0.002) TCGA-EE-A29L-06 20 31825584 31825584 G A BPIFA1 Missense_Mutation p.G23S 0.21 tolerated(0.16) benign(0.017) TCGA-EE-A29L-06 20 33764091 33764091 C T PROCR Missense_Mutation p.A148V 0.65 deleterious(0) probably_damaging(0.952) TCGA-EE-A29L-06 20 33879595 33879595 C T FAM83C Silent p.T171T 0.26 TCGA-EE-A29L-06 20 34618321 34618321 G A CNBD2 Nonsense_Mutation p.W490* 0.23 TCGA-EE-A29L-06 20 35827600 35827600 C T RPN2 Missense_Mutation p.R151C 0.22 tolerated(0.08) probably_damaging(0.977) TCGA-EE-A29L-06 20 37580853 37580853 C T FAM83D Missense_Mutation p.S513F 0.22 tolerated(0.07) possibly_damaging(0.73) TCGA-EE-A29L-06 20 39990818 39990818 C T EMILIN3 Missense_Mutation p.G464D 0.18 tolerated(1) benign(0.001) TCGA-EE-A29L-06 20 40709567 40709567 C T PTPRT Silent p.Q1426Q 0.24 TCGA-EE-A29L-06 20 40739032 40739032 G A PTPRT Silent p.F1065F 0.70 TCGA-EE-A29L-06 20 4167936 4167936 C T SMOX Missense_Mutation p.S517F 0.30 deleterious(0) probably_damaging(0.958) TCGA-EE-A29L-06 20 43057087 43057087 C T HNF4A Silent p.N414N 0.21 TCGA-EE-A29L-06 20 43058294 43058294 G A HNF4A Missense_Mutation p.E472K 0.26 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-EE-A29L-06 20 43379280 43379280 C A KCNK15 Missense_Mutation p.P265H 0.68 tolerated(0.27) benign(0) TCGA-EE-A29L-06 20 43929849 43929849 C T MATN4 Missense_Mutation p.S261N 0.31 benign(0.027) TCGA-EE-A29L-06 20 44184469 44184469 G A WFDC8 Missense_Mutation p.H106Y 0.23 deleterious(0.04) benign(0.117) TCGA-EE-A29L-06 20 44691023 44691023 A C NCOA5 Silent p.P552P 0.27 TCGA-EE-A29L-06 20 45618738 45618738 G A EYA2 Nonsense_Mutation p.W30* 0.31 TCGA-EE-A29L-06 20 45618739 45618739 G A EYA2 Nonsense_Mutation p.W30* 0.30 TCGA-EE-A29L-06 20 46313184 46313184 G A SULF2 Silent p.S293S 0.69 TCGA-EE-A29L-06 20 47605858 47605858 A T ARFGEF2 Missense_Mutation p.N857I 0.25 deleterious(0.04) possibly_damaging(0.706) TCGA-EE-A29L-06 20 47845304 47845304 C T DDX27 Silent p.P284P 0.23 TCGA-EE-A29L-06 20 48525079 48525079 G A SPATA2 5'UTR 0.25 TCGA-EE-A29L-06 20 49195842 49195842 C T PTPN1 Silent p.F280F 0.23 TCGA-EE-A29L-06 20 51870663 51870663 G A TSHZ2 Silent p.A222A 0.21 TCGA-EE-A29L-06 20 51870703 51870703 G A TSHZ2 Missense_Mutation p.E236K 0.20 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A29L-06 20 51871325 51871325 C T TSHZ2 Missense_Mutation p.P443L 0.22 tolerated(0.08) benign(0.002) TCGA-EE-A29L-06 20 55982684 55982684 C T RBM38 Missense_Mutation p.P168S 0.25 deleterious(0.05) probably_damaging(0.994) TCGA-EE-A29L-06 20 56137137 56137137 C G PCK1 Missense_Mutation p.L79V 0.65 tolerated(0.06) benign(0.044) TCGA-EE-A29L-06 20 56189956 56189956 C T ZBP1 Silent p.T163T 0.71 TCGA-EE-A29L-06 20 57429142 57429142 C T GNAS Silent p.P274P 0.38 TCGA-EE-A29L-06 20 57766491 57766491 G A ZNF831 Silent p.R139R 0.66 TCGA-EE-A29L-06 20 57829200 57829200 G A ZNF831 Missense_Mutation p.G1479E 0.31 tolerated(0.14) benign(0.075) TCGA-EE-A29L-06 20 58349480 58349480 C T PHACTR3 Missense_Mutation p.S370F 0.27 deleterious(0) possibly_damaging(0.736) TCGA-EE-A29L-06 20 60791637 60791637 G A HRH3 Missense_Mutation p.P255S 0.24 tolerated(0.94) benign(0.016) TCGA-EE-A29L-06 20 60892524 60892524 C T LAMA5 Missense_Mutation p.G2463E 0.14 benign(0.034) TCGA-EE-A29L-06 20 62152912 62152912 T G PPDPF Missense_Mutation p.C35G 0.18 tolerated(0.12) benign(0.002) TCGA-EE-A29L-06 20 62164928 62164928 C T PTK6 Missense_Mutation p.V216M 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 20 62374129 62374129 C T SLC2A4RG Silent p.I346I 0.36 TCGA-EE-A29L-06 20 62599259 62599259 G A ZNF512B Silent p.S15S 0.51 TCGA-EE-A29L-06 20 9438082 9438082 G A PLCB4 Missense_Mutation p.M994I 0.53 tolerated(0.31) benign(0.006) TCGA-EE-A29L-06 20 9496969 9496969 G A LAMP5 Missense_Mutation p.D146N 0.68 tolerated(0.39) probably_damaging(1) TCGA-EE-A29L-06 20 9538276 9538276 G A PAK7 Silent p.I574I 0.50 TCGA-EE-A29L-06 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.34 tolerated(0.4) benign(0) TCGA-EE-A29L-06 21 10920164 10920164 C T TPTE Missense_Mutation p.E364K 0.13 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A29L-06 21 11020917 11020917 C T BAGE2 Intron 0.16 TCGA-EE-A29L-06 21 11039034 11039034 G A BAGE2 RNA 0.27 TCGA-EE-A29L-06 21 28338312 28338312 C T ADAMTS5 Silent p.R133R 0.38 TCGA-EE-A29L-06 21 30927556 30927556 C T GRIK1 Missense_Mutation p.M808I 0.30 tolerated(0.61) benign(0.027) TCGA-EE-A29L-06 21 31768610 31768610 C T KRTAP13-1 Missense_Mutation p.S69F 0.69 deleterious(0.05) possibly_damaging(0.548) TCGA-EE-A29L-06 21 34053931 34053931 C T SYNJ1 Missense_Mutation p.G449S 0.22 deleterious(0.05) benign(0.315) TCGA-EE-A29L-06 21 34927484 34927484 C T SON Missense_Mutation p.R1983C 0.32 unknown(0) TCGA-EE-A29L-06 21 37785496 37785496 C T CHAF1B Missense_Mutation p.P459L 0.24 tolerated(0.09) benign(0.003) TCGA-EE-A29L-06 21 38997754 38997754 T G KCNJ6 Missense_Mutation p.T327P 0.16 tolerated(0.38) benign(0.389) TCGA-EE-A29L-06 21 40571405 40571405 A G BRWD1 Missense_Mutation p.V1646A 0.21 tolerated(0.28) benign(0.007) TCGA-EE-A29L-06 21 41516632 41516632 C T DSCAM Silent p.G1015G 0.18 TCGA-EE-A29L-06 21 42767678 42767678 G A MX2 Missense_Mutation p.E346K 0.16 deleterious(0) probably_damaging(0.971) TCGA-EE-A29L-06 21 42851186 42851186 C T TMPRSS2 Missense_Mutation p.G236E 0.29 tolerated(0.08) probably_damaging(0.978) TCGA-EE-A29L-06 21 43164098 43164098 G A RIPK4 Missense_Mutation p.A380V 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29L-06 21 43702436 43702436 C T ABCG1 Missense_Mutation p.T214I 0.94 tolerated(0.12) benign(0.088) TCGA-EE-A29L-06 21 44837465 44837465 C T SIK1 Missense_Mutation p.R645Q 0.23 tolerated(0.12) possibly_damaging(0.652) TCGA-EE-A29L-06 21 46313378 46313378 C T ITGB2 Missense_Mutation p.G389R 0.28 tolerated(0.1) benign(0.045) TCGA-EE-A29L-06 21 47819662 47819662 C T PCNT Silent p.L1581L 0.25 TCGA-EE-A29L-06 21 47831639 47831639 G A PCNT Silent p.K1884K 0.20 TCGA-EE-A29L-06 21 47831640 47831640 G A PCNT Missense_Mutation p.A1885T 0.20 benign(0.002) TCGA-EE-A29L-06 21 47987583 47987583 C T DIP2A 3'UTR 0.20 TCGA-EE-A29L-06 22 17119484 17119484 C T TPTEP1 RNA 0.15 TCGA-EE-A29L-06 22 17583051 17583051 C T IL17RA Silent p.I207I 0.12 TCGA-EE-A29L-06 22 18021603 18021603 C T CECR2 Missense_Mutation p.P633S 0.08 deleterious(0) probably_damaging(0.923) TCGA-EE-A29L-06 22 18905843 18905843 G A PRODH Silent p.N471N 0.28 TCGA-EE-A29L-06 22 20126823 20126823 G A ZDHHC8 Missense_Mutation p.G71S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 22 20386754 20386754 G A PI4KAP1 RNA 0.17 TCGA-EE-A29L-06 22 21563091 21563091 G A GGT2 Silent p.I477I 0.25 TCGA-EE-A29L-06 22 22153384 22153384 G A MAPK1 Missense_Mutation p.P176S 0.25 tolerated(0.24) benign(0.295) TCGA-EE-A29L-06 22 22749647 22749647 C T IGLV7-43 Silent p.F57F 0.18 TCGA-EE-A29L-06 22 23915358 23915358 G A IGLL1 3'UTR 0.71 TCGA-EE-A29L-06 22 24219284 24219284 C T AP000350.10 Silent p.L119L 0.76 TCGA-EE-A29L-06 22 24227064 24227064 C T SLC2A11 3'UTR 0.68 TCGA-EE-A29L-06 22 24581879 24581879 T C SUSD2 Missense_Mutation p.Y441H 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 22 24616028 24616028 G A GGT5 Silent p.F558F 0.81 TCGA-EE-A29L-06 22 25270412 25270412 C T SGSM1 Missense_Mutation p.S441F 0.10 tolerated(0.23) benign(0) TCGA-EE-A29L-06 22 25294507 25294507 C T SGSM1 Missense_Mutation p.S919F 0.68 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29L-06 22 26270358 26270358 C T MYO18B Missense_Mutation p.R1353C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 22 26422532 26422532 C T MYO18B Missense_Mutation p.R2198C 0.12 tolerated(0.14) benign(0.002) TCGA-EE-A29L-06 22 26693009 26693009 G A SEZ6L Silent p.Q375Q 0.15 TCGA-EE-A29L-06 22 26830175 26830175 C T ASPHD2 Silent p.I198I 0.26 TCGA-EE-A29L-06 22 30200727 30200727 G A ASCC2 Missense_Mutation p.S418L 0.12 tolerated(0.27) benign(0.001) TCGA-EE-A29L-06 22 30688741 30688741 G A TBC1D10A Missense_Mutation p.P391S 0.59 tolerated(0.45) benign(0.003) TCGA-EE-A29L-06 22 30733846 30733846 G A SF3A1 Missense_Mutation p.P595L 0.50 tolerated(0.11) probably_damaging(0.981) TCGA-EE-A29L-06 22 30770064 30770064 C G CCDC157 Silent p.T552T 0.69 TCGA-EE-A29L-06 22 30866032 30866032 G A SEC14L3 Missense_Mutation p.H70Y 0.50 deleterious(0) benign(0.105) TCGA-EE-A29L-06 22 31286766 31286766 G A OSBP2 Missense_Mutation p.E559K 0.10 deleterious(0) probably_damaging(0.976) TCGA-EE-A29L-06 22 31286918 31286918 G C OSBP2 Silent p.L609L 0.07 TCGA-EE-A29L-06 22 31531921 31531921 A C PLA2G3 Missense_Mutation p.C440G 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 22 31536039 31536039 C T PLA2G3 Missense_Mutation p.G101E 0.85 deleterious(0.02) probably_damaging(0.972) TCGA-EE-A29L-06 22 32009473 32009473 T C SFI1 Missense_Mutation p.M900T 0.23 tolerated(0.2) benign(0.007) TCGA-EE-A29L-06 22 32588960 32588960 G A RFPL2 Missense_Mutation p.S162F 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29L-06 22 32631072 32631072 C T SLC5A4 Missense_Mutation p.E225K 0.64 tolerated(0.32) benign(0.243) TCGA-EE-A29L-06 22 33260955 33260955 G A SYN3 Missense_Mutation p.P220S 0.13 tolerated(0.33) unknown(0) TCGA-EE-A29L-06 22 35478517 35478517 G A ISX Missense_Mutation p.R79K 0.24 tolerated(0.22) benign(0.027) TCGA-EE-A29L-06 22 36122392 36122392 G A APOL5 Missense_Mutation p.G93R 0.22 tolerated(0.11) probably_damaging(0.951) TCGA-EE-A29L-06 22 36122920 36122920 C T APOL5 Missense_Mutation p.P269S 0.21 tolerated(1) probably_damaging(0.969) TCGA-EE-A29L-06 22 36122921 36122921 C T APOL5 Missense_Mutation p.P269L 0.21 deleterious(0.02) benign(0.35) TCGA-EE-A29L-06 22 36688254 36688254 C T MYH9 Silent p.E1374E 0.32 TCGA-EE-A29L-06 22 36714331 36714331 G A MYH9 Missense_Mutation p.T383I 0.61 possibly_damaging(0.449) TCGA-EE-A29L-06 22 36922104 36922104 G A EIF3D Missense_Mutation p.P22L 0.10 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A29L-06 22 36960716 36960716 G A CACNG2 Silent p.L218L 0.09 TCGA-EE-A29L-06 22 37333557 37333557 C T CSF2RB Silent p.P569P 0.26 TCGA-EE-A29L-06 22 37881962 37881962 T G MFNG Missense_Mutation p.Q85P 0.12 deleterious(0) probably_damaging(0.99) TCGA-EE-A29L-06 22 37962599 37962599 C T CDC42EP1 Silent p.F81F 0.27 TCGA-EE-A29L-06 22 38121734 38121734 C T TRIOBP Silent p.P1057P 0.11 TCGA-EE-A29L-06 22 38130869 38130869 G A TRIOBP Missense_Mutation p.R1509K 0.16 tolerated_low_confidence(0.98) benign(0.006) TCGA-EE-A29L-06 22 38483273 38483273 T A BAIAP2L2 Splice_Site p.X373_splice 0.35 TCGA-EE-A29L-06 22 38565443 38565443 G C PLA2G6 5'UTR 0.28 TCGA-EE-A29L-06 22 38642014 38642014 G A TMEM184B Silent p.S95S 0.17 TCGA-EE-A29L-06 22 39122340 39122340 C T GTPBP1 Silent p.D432D 0.57 TCGA-EE-A29L-06 22 39425373 39425373 C T APOBEC3D Missense_Mutation p.P204L 0.43 tolerated(0.8) benign(0.332) TCGA-EE-A29L-06 22 39477044 39477044 C T APOBEC3G Missense_Mutation p.S93F 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 22 40069009 40069009 G A CACNA1I Missense_Mutation p.E1569K 0.46 deleterious(0) possibly_damaging(0.621) TCGA-EE-A29L-06 22 40361991 40361991 C T GRAP2 Intron 0.32 TCGA-EE-A29L-06 22 40696535 40696535 C A TNRC6B Missense_Mutation p.S1262Y 0.41 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A29L-06 22 40814646 40814646 G A MKL1 Missense_Mutation p.P599L 0.22 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29L-06 22 41257788 41257788 C T DNAJB7 Missense_Mutation p.E71K 0.13 tolerated(0.06) possibly_damaging(0.703) TCGA-EE-A29L-06 22 41523662 41523662 G A EP300 Missense_Mutation p.E360K 0.20 unknown(0) TCGA-EE-A29L-06 22 41742086 41742086 C T ZC3H7B Silent p.T513T 0.59 TCGA-EE-A29L-06 22 42383211 42383211 G A SEPT3 Silent p.V111V 0.08 TCGA-EE-A29L-06 22 42605786 42605786 G A TCF20 Silent p.I1842I 0.08 TCGA-EE-A29L-06 22 43619186 43619186 G A SCUBE1 Missense_Mutation p.P415L 0.11 deleterious(0.02) benign(0.005) TCGA-EE-A29L-06 22 44074038 44074038 G A EFCAB6 Silent p.P419P 0.21 TCGA-EE-A29L-06 22 45258223 45258223 G A PRR5-ARHGAP8 Silent p.L560L 0.65 TCGA-EE-A29L-06 22 46835148 46835148 C T CELSR1 Silent p.P1448P 0.19 TCGA-EE-A29L-06 22 50719522 50719522 G A PLXNB2 Silent p.F1253F 0.16 TCGA-EE-A29L-06 22 50906822 50906822 G A SBF1 Missense_Mutation p.P42S 0.12 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A29L-06 22 50987681 50987681 C T KLHDC7B Silent p.I362I 0.16 TCGA-EE-A29L-06 22 50987878 50987878 G A KLHDC7B Nonsense_Mutation p.W428* 0.38 TCGA-EE-A29L-06 2 100623240 100623240 G A AFF3 Nonsense_Mutation p.Q268* 0.17 TCGA-EE-A29L-06 2 100915380 100915380 C T LONRF2 Missense_Mutation p.G465E 0.43 deleterious(0) probably_damaging(0.918) TCGA-EE-A29L-06 2 10188702 10188702 C T KLF11 Missense_Mutation p.A413V 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A29L-06 2 102984507 102984507 G A IL18R1 Missense_Mutation p.G94E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 103010956 103010956 C T IL18R1 Missense_Mutation p.S380F 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 2 103236409 103236409 G A SLC9A2 Silent p.E34E 0.59 TCGA-EE-A29L-06 2 105708940 105708940 C T MRPS9 Nonsense_Mutation p.R245* 0.16 TCGA-EE-A29L-06 2 107041433 107041433 G A RGPD3 Missense_Mutation p.S997L 0.38 deleterious(0.04) benign(0.002) TCGA-EE-A29L-06 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.52 probably_damaging(1) TCGA-EE-A29L-06 2 108477284 108477284 G A RGPD4 Nonsense_Mutation p.W607* 0.41 TCGA-EE-A29L-06 2 108872050 108872050 C T SULT1C3 Missense_Mutation p.P141L 0.21 deleterious(0) benign(0.27) TCGA-EE-A29L-06 2 108872051 108872051 C T SULT1C3 Silent p.P141P 0.22 TCGA-EE-A29L-06 2 108881442 108881442 C T SULT1C3 Silent p.I261I 0.20 TCGA-EE-A29L-06 2 10922464 10922464 G C ATP6V1C2 Missense_Mutation p.R386P 0.59 tolerated(0.19) benign(0.29) TCGA-EE-A29L-06 2 109380827 109380827 C T RANBP2 Missense_Mutation p.P1278S 0.08 tolerated(0.42) benign(0.018) TCGA-EE-A29L-06 2 11053071 11053071 G A KCNF1 Silent p.E173E 0.16 TCGA-EE-A29L-06 2 110881341 110881341 G A NPHP1 3'UTR 0.18 TCGA-EE-A29L-06 2 113420661 113420661 C T SLC20A1 3'UTR 0.25 TCGA-EE-A29L-06 2 113831960 113831960 G A IL1F10 Silent p.V29V 0.13 TCGA-EE-A29L-06 2 113940402 113940402 G A PSD4 Silent p.R123R 0.18 TCGA-EE-A29L-06 2 116485423 116485423 A C DPP10 Missense_Mutation p.Q207P 0.43 tolerated(0.09) possibly_damaging(0.575) TCGA-EE-A29L-06 2 11780712 11780712 C T GREB1 3'UTR 0.23 TCGA-EE-A29L-06 2 120369265 120369265 C T PCDP1 Nonsense_Mutation p.Q420* 0.17 TCGA-EE-A29L-06 2 1204876 1204876 G A SNTG2 Missense_Mutation p.A227T 0.18 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A29L-06 2 121740331 121740331 C T GLI2 Silent p.L520L 0.29 TCGA-EE-A29L-06 2 121991717 121991717 C T TFCP2L1 Missense_Mutation p.R383Q 0.21 tolerated(0.31) benign(0.001) TCGA-EE-A29L-06 2 125192188 125192188 C T CNTNAP5 Silent p.F219F 0.53 TCGA-EE-A29L-06 2 128262702 128262702 C T IWS1 Silent p.Q259Q 0.27 TCGA-EE-A29L-06 2 128262941 128262941 G A IWS1 Missense_Mutation p.P180S 0.41 tolerated_low_confidence(0.74) benign(0.282) TCGA-EE-A29L-06 2 130872850 130872850 G A POTEF Silent p.L191L 0.39 TCGA-EE-A29L-06 2 130912694 130912694 G A SMPD4 Silent p.P515P 0.11 TCGA-EE-A29L-06 2 131487309 131487309 G A GPR148 Silent p.E195E 0.24 TCGA-EE-A29L-06 2 133174800 133174800 G A GPR39 Missense_Mutation p.G62E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 133540786 133540786 C T NCKAP5 Missense_Mutation p.E1200K 0.23 tolerated(0.2) benign(0.22) TCGA-EE-A29L-06 2 135621140 135621140 A T ACMSD Missense_Mutation p.Q142L 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29L-06 2 135745570 135745570 G A MAP3K19 Missense_Mutation p.S291F 0.19 deleterious(0) probably_damaging(0.969) TCGA-EE-A29L-06 2 137928430 137928430 G A THSD7B Missense_Mutation p.E549K 0.26 tolerated(0.85) possibly_damaging(0.486) TCGA-EE-A29L-06 2 138413132 138413132 C T THSD7B Missense_Mutation p.S1339L 0.35 deleterious(0.01) unknown(0) TCGA-EE-A29L-06 2 141032145 141032145 C T LRP1B Silent p.V4330V 0.30 TCGA-EE-A29L-06 2 141773462 141773462 C T LRP1B Missense_Mutation p.E665K 0.19 possibly_damaging(0.621) TCGA-EE-A29L-06 2 144525724 144525724 G A ARHGAP15 Missense_Mutation p.G471S 0.42 tolerated(0.23) benign(0) TCGA-EE-A29L-06 2 145158812 145158812 G A ZEB2 Silent p.A290A 0.46 TCGA-EE-A29L-06 2 148654035 148654035 T G ACVR2A Missense_Mutation p.V74G 0.18 deleterious(0) probably_damaging(0.951) TCGA-EE-A29L-06 2 149853789 149853789 G A KIF5C Missense_Mutation p.E679K 0.19 tolerated(0.37) benign(0.004) TCGA-EE-A29L-06 2 1499953 1499953 G A TPO Silent p.R733R 0.30 TCGA-EE-A29L-06 2 1500483 1500483 G A TPO Missense_Mutation p.E778K 0.45 deleterious(0.04) possibly_damaging(0.792) TCGA-EE-A29L-06 2 152300066 152300066 T C RIF1 Missense_Mutation p.L610P 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 152300067 152300067 T A RIF1 Silent p.L610L 0.41 TCGA-EE-A29L-06 2 152321761 152321761 C T RIF1 Silent p.S1909S 0.23 TCGA-EE-A29L-06 2 15534408 15534408 G A NBAS Missense_Mutation p.S1067F 0.40 deleterious(0.01) possibly_damaging(0.827) TCGA-EE-A29L-06 2 15614280 15614280 G A NBAS Missense_Mutation p.P504S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 2 15763586 15763586 C T DDX1 Silent p.L492L 0.32 TCGA-EE-A29L-06 2 159481448 159481448 C T PKP4 Missense_Mutation p.S221F 0.23 tolerated(0.1) benign(0.177) TCGA-EE-A29L-06 2 160664998 160664998 G A LY75-CD302 Missense_Mutation p.T1595I 0.20 deleterious(0) probably_damaging(0.934) TCGA-EE-A29L-06 2 162719394 162719394 T A SLC4A10 Silent p.L196L 0.39 TCGA-EE-A29L-06 2 162833288 162833288 C T SLC4A10 Silent p.I1082I 0.50 TCGA-EE-A29L-06 2 162873628 162873628 C T DPP4 Silent p.V486V 0.34 TCGA-EE-A29L-06 2 163000608 163000608 C T GCG Missense_Mutation p.M155I 0.25 tolerated(0.45) benign(0.029) TCGA-EE-A29L-06 2 163204218 163204218 C T GCA Missense_Mutation p.S53F 0.23 deleterious(0.01) possibly_damaging(0.601) TCGA-EE-A29L-06 2 163204219 163204219 C T GCA Silent p.S53S 0.23 TCGA-EE-A29L-06 2 163241264 163241264 C T KCNH7 Missense_Mutation p.D966N 0.44 tolerated(0.38) benign(0.001) TCGA-EE-A29L-06 2 163693155 163693155 C T KCNH7 Missense_Mutation p.D67N 0.16 deleterious(0.05) possibly_damaging(0.511) TCGA-EE-A29L-06 2 164467000 164467000 G A FIGN Missense_Mutation p.R448C 0.40 tolerated(0.08) benign(0.232) TCGA-EE-A29L-06 2 1652631 1652631 C T PXDN Missense_Mutation p.G974E 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 165353883 165353883 C T GRB14 Splice_Site p.X407_splice 0.52 TCGA-EE-A29L-06 2 165477867 165477867 G A GRB14 5'UTR 0.71 TCGA-EE-A29L-06 2 166172168 166172168 G A SCN2A Missense_Mutation p.R524Q 0.26 tolerated(0.42) benign(0.056) TCGA-EE-A29L-06 2 166848472 166848472 G A SCN1A Silent p.I1771I 0.21 TCGA-EE-A29L-06 2 166892893 166892893 C T SCN1A Missense_Mutation p.E1032K 0.27 tolerated(0.13) possibly_damaging(0.664) TCGA-EE-A29L-06 2 167055909 167055909 G A SCN9A Missense_Mutation p.S1736F 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 167129170 167129170 C T SCN9A Silent p.L1019L 0.24 TCGA-EE-A29L-06 2 168074748 168074748 A T XIRP2 Missense_Mutation p.I266F 0.40 benign(0.011) TCGA-EE-A29L-06 2 168103100 168103100 C A XIRP2 Missense_Mutation p.A1733D 0.26 probably_damaging(0.913) TCGA-EE-A29L-06 2 168103231 168103231 G A XIRP2 Missense_Mutation p.E1777K 0.36 benign(0.125) TCGA-EE-A29L-06 2 168105146 168105146 A T XIRP2 Missense_Mutation p.K2415I 0.18 probably_damaging(0.996) TCGA-EE-A29L-06 2 169313054 169313054 C T CERS6 Silent p.F32F 0.15 TCGA-EE-A29L-06 2 169713205 169713205 G A NOSTRIN Missense_Mutation p.E381K 0.25 deleterious(0.01) benign(0.317) TCGA-EE-A29L-06 2 170050321 170050321 C T LRP2 Missense_Mutation p.G2927D 0.18 possibly_damaging(0.521) TCGA-EE-A29L-06 2 170062083 170062083 A C LRP2 Missense_Mutation p.F2541V 0.23 probably_damaging(0.967) TCGA-EE-A29L-06 2 170072834 170072834 C T LRP2 Missense_Mutation p.E1919K 0.18 benign(0.426) TCGA-EE-A29L-06 2 170099481 170099481 C T LRP2 Missense_Mutation p.D1218N 0.20 probably_damaging(1) TCGA-EE-A29L-06 2 173883525 173883525 G A RAPGEF4 Missense_Mutation p.G717E 0.48 deleterious(0.05) benign(0.243) TCGA-EE-A29L-06 2 176958087 176958087 G A HOXD13 Missense_Mutation p.A157T 0.17 deleterious(0.03) benign(0.109) TCGA-EE-A29L-06 2 176988963 176988963 C T HOXD9 3'UTR 0.20 TCGA-EE-A29L-06 2 178416698 178416698 C T TTC30B Missense_Mutation p.R265K 0.27 tolerated(1) benign(0) TCGA-EE-A29L-06 2 179325105 179325105 G A DFNB59 Missense_Mutation p.G233E 0.51 deleterious(0) probably_damaging(0.916) TCGA-EE-A29L-06 2 179417082 179417082 T A TTN Missense_Mutation p.K30182I 0.15 TCGA-EE-A29L-06 2 179417696 179417696 C T TTN Silent p.K29977K 0.45 TCGA-EE-A29L-06 2 179466271 179466271 C T TTN Missense_Mutation p.D18485N 0.24 TCGA-EE-A29L-06 2 179470335 179470335 C T TTN Missense_Mutation p.G17896E 0.20 TCGA-EE-A29L-06 2 179477638 179477638 C T TTN Missense_Mutation p.G16604R 0.30 TCGA-EE-A29L-06 2 179477996 179477996 C T TTN Missense_Mutation p.G16514S 0.50 TCGA-EE-A29L-06 2 179566258 179566258 C T TTN Missense_Mutation p.E10199K 0.44 TCGA-EE-A29L-06 2 179597365 179597365 C T TTN Missense_Mutation p.G5475R 0.20 TCGA-EE-A29L-06 2 179597422 179597422 G A TTN Missense_Mutation p.P5456S 0.17 TCGA-EE-A29L-06 2 179597594 179597594 T A TTN Missense_Mutation p.S5437C 0.31 TCGA-EE-A29L-06 2 179600731 179600731 G A TTN Silent p.F4814F 0.31 TCGA-EE-A29L-06 2 179605086 179605086 G A TTN Missense_Mutation p.P4292S 0.44 TCGA-EE-A29L-06 2 179605087 179605087 G A TTN Silent p.V4291V 0.44 TCGA-EE-A29L-06 2 179611642 179611642 C T TTN Intron 0.56 TCGA-EE-A29L-06 2 179613718 179613718 T A TTN Intron 0.29 TCGA-EE-A29L-06 2 179613977 179613977 C T TTN Intron 0.11 TCGA-EE-A29L-06 2 179614349 179614349 C T TTN Intron 0.25 TCGA-EE-A29L-06 2 179621438 179621438 C T TTN Missense_Mutation p.E3589K 0.49 TCGA-EE-A29L-06 2 179621439 179621439 C T TTN Silent p.K3588K 0.49 TCGA-EE-A29L-06 2 179640734 179640734 C T TTN Missense_Mutation p.E1953K 0.39 TCGA-EE-A29L-06 2 179641514 179641514 C T TTN Missense_Mutation p.D1693N 0.30 TCGA-EE-A29L-06 2 179647604 179647604 C T TTN Missense_Mutation p.S1010N 0.44 TCGA-EE-A29L-06 2 179647612 179647612 C T TTN Silent p.A1007A 0.46 TCGA-EE-A29L-06 2 179648473 179648473 G A TTN Missense_Mutation p.P939S 0.18 TCGA-EE-A29L-06 2 179648929 179648929 G A TTN Silent p.F881F 0.19 TCGA-EE-A29L-06 2 179659879 179659879 G A TTN Missense_Mutation p.P339S 0.45 TCGA-EE-A29L-06 2 18112700 18112700 C T KCNS3 Missense_Mutation p.T142I 0.51 tolerated(0.62) benign(0.001) TCGA-EE-A29L-06 2 182376453 182376453 G A ITGA4 Missense_Mutation p.E625K 0.37 tolerated(0.16) benign(0.02) TCGA-EE-A29L-06 2 182412558 182412558 G A CERKL Missense_Mutation p.P410S 0.21 tolerated(0.37) benign(0.011) TCGA-EE-A29L-06 2 187626229 187626229 A T FAM171B Missense_Mutation p.K387I 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A29L-06 2 188245419 188245419 C T CALCRL Missense_Mutation p.D94N 0.40 tolerated(0.09) benign(0.015) TCGA-EE-A29L-06 2 188332640 188332640 C T TFPI Nonsense_Mutation p.W216* 0.24 TCGA-EE-A29L-06 2 189859048 189859048 G A COL3A1 Missense_Mutation p.R428Q 0.22 unknown(0) TCGA-EE-A29L-06 2 190324142 190324142 C T WDR75 Missense_Mutation p.S257L 0.19 deleterious(0) possibly_damaging(0.616) TCGA-EE-A29L-06 2 190585403 190585403 A G ANKAR Missense_Mutation p.N842S 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29L-06 2 196681528 196681528 C T DNAH7 Silent p.K3195K 0.45 TCGA-EE-A29L-06 2 196741308 196741308 C T DNAH7 Missense_Mutation p.R2026K 0.45 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A29L-06 2 196788418 196788418 C T DNAH7 Silent p.L1242L 0.17 TCGA-EE-A29L-06 2 196837012 196837012 C T DNAH7 Missense_Mutation p.R671K 0.14 tolerated(0.52) benign(0.001) TCGA-EE-A29L-06 2 197183280 197183280 A T HECW2 Silent p.T778T 0.34 TCGA-EE-A29L-06 2 198270043 198270043 G A SF3B1 Missense_Mutation p.P465S 0.12 tolerated(0.06) possibly_damaging(0.855) TCGA-EE-A29L-06 2 202568857 202568857 G A ALS2 Silent p.F1641F 0.23 TCGA-EE-A29L-06 2 20402072 20402072 C T SDC1 3'UTR 0.17 TCGA-EE-A29L-06 2 207170308 207170308 C A ZDBF2 Silent p.A352A 0.14 TCGA-EE-A29L-06 2 207173591 207173591 T G ZDBF2 Missense_Mutation p.C1447G 0.12 deleterious(0.02) benign(0.227) TCGA-EE-A29L-06 2 207175629 207175629 C T ZDBF2 Missense_Mutation p.S2126F 0.21 deleterious(0.02) possibly_damaging(0.485) TCGA-EE-A29L-06 2 207530696 207530696 G A DYTN Silent p.S346S 0.44 TCGA-EE-A29L-06 2 207603142 207603142 C T MDH1B 3'UTR 0.19 TCGA-EE-A29L-06 2 207988671 207988671 G A KLF7 Missense_Mutation p.A187V 0.20 tolerated(0.27) benign(0.002) TCGA-EE-A29L-06 2 209190707 209190707 C T PIKFYVE Missense_Mutation p.P1058S 0.43 deleterious(0.02) probably_damaging(1) TCGA-EE-A29L-06 2 209217485 209217485 C T PIKFYVE Silent p.F1941F 0.39 TCGA-EE-A29L-06 2 212251709 212251709 G A ERBB4 Missense_Mutation p.P1117L 0.35 tolerated(0.52) benign(0.001) TCGA-EE-A29L-06 2 21225916 21225916 G A APOB Silent p.I4126I 0.23 TCGA-EE-A29L-06 2 21229420 21229420 G A APOB Silent p.F3440F 0.42 TCGA-EE-A29L-06 2 21230280 21230280 C T APOB Missense_Mutation p.E3154K 0.20 probably_damaging(0.998) TCGA-EE-A29L-06 2 21233907 21233907 C T APOB Missense_Mutation p.D1945N 0.26 probably_damaging(0.996) TCGA-EE-A29L-06 2 21234080 21234080 G A APOB Missense_Mutation p.S1887L 0.22 probably_damaging(0.991) TCGA-EE-A29L-06 2 21249778 21249778 C T APOB Missense_Mutation p.G709E 0.24 probably_damaging(1) TCGA-EE-A29L-06 2 213872633 213872633 G A IKZF2 Silent p.I344I 0.25 TCGA-EE-A29L-06 2 218953976 218953976 G A RUFY4 Missense_Mutation p.E522K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 2 219029419 219029419 G A CXCR1 Silent p.F172F 0.33 TCGA-EE-A29L-06 2 219536735 219536735 G A RNF25 5'UTR 0.18 TCGA-EE-A29L-06 2 219602691 219602691 G A TTLL4 Missense_Mutation p.G98S 0.27 tolerated(0.18) probably_damaging(0.948) TCGA-EE-A29L-06 2 219887933 219887933 C T CCDC108 Missense_Mutation p.R939K 0.17 tolerated(0.07) benign(0.089) TCGA-EE-A29L-06 2 220348742 220348742 C T SPEG Missense_Mutation p.P2186L 0.16 benign(0.001) TCGA-EE-A29L-06 2 220349119 220349119 G A SPEG Missense_Mutation p.V2312M 0.12 benign(0.372) TCGA-EE-A29L-06 2 220354402 220354402 C T SPEG Missense_Mutation p.P2888S 0.25 benign(0.004) TCGA-EE-A29L-06 2 220397091 220397091 G A ASIC4 Missense_Mutation p.E431K 0.52 tolerated(0.15) benign(0.056) TCGA-EE-A29L-06 2 220479232 220479232 C T STK11IP Missense_Mutation p.R956C 0.29 deleterious(0.01) benign(0.004) TCGA-EE-A29L-06 2 222347194 222347194 G A EPHA4 Missense_Mutation p.S399F 0.42 tolerated(0.5) benign(0.084) TCGA-EE-A29L-06 2 223423285 223423285 G A SGPP2 Missense_Mutation p.G290R 0.22 deleterious(0) probably_damaging(0.983) TCGA-EE-A29L-06 2 225266490 225266490 G A FAM124B 5'UTR 0.17 TCGA-EE-A29L-06 2 226378191 226378191 C T NYAP2 Missense_Mutation p.P109L 0.23 deleterious(0.02) possibly_damaging(0.6) TCGA-EE-A29L-06 2 227915743 227915743 A G COL4A4 Missense_Mutation p.S1034P 0.17 unknown(0) TCGA-EE-A29L-06 2 228681923 228681923 G A CCL20 3'UTR 0.65 TCGA-EE-A29L-06 2 228758545 228758545 C T DAW1 Missense_Mutation p.L118F 0.17 deleterious(0) possibly_damaging(0.451) TCGA-EE-A29L-06 2 228882168 228882168 C T SPHKAP Silent p.V1134V 0.16 TCGA-EE-A29L-06 2 228884106 228884106 G A SPHKAP Silent p.S488S 0.27 TCGA-EE-A29L-06 2 229890776 229890776 C T PID1 Missense_Mutation p.G107S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 2 230861576 230861576 C T FBXO36 Silent p.I105I 0.50 TCGA-EE-A29L-06 2 230875502 230875502 G A FBXO36 Missense_Mutation p.G157S 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A29L-06 2 231103072 231103072 G A SP140 Missense_Mutation p.E128K 0.45 tolerated(0.09) benign(0.418) TCGA-EE-A29L-06 2 231150529 231150529 G A SP140 Missense_Mutation p.D543N 0.50 tolerated(0.46) benign(0.018) TCGA-EE-A29L-06 2 231152662 231152662 G A SP140 Silent p.Q567Q 0.23 TCGA-EE-A29L-06 2 231222606 231222606 C T SP140L Missense_Mutation p.S65L 0.44 deleterious(0) benign(0.133) TCGA-EE-A29L-06 2 231222634 231222634 C T SP140L Silent p.F74F 0.19 TCGA-EE-A29L-06 2 231249953 231249953 G A SP140L Missense_Mutation p.D240N 0.28 tolerated(0.53) benign(0.036) TCGA-EE-A29L-06 2 231267534 231267534 G A SP140L Missense_Mutation p.G556R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 231931703 231931703 T A PSMD1 Missense_Mutation p.L130M 0.34 deleterious(0.03) possibly_damaging(0.844) TCGA-EE-A29L-06 2 232104718 232104718 C T ARMC9 Silent p.S281S 0.42 TCGA-EE-A29L-06 2 233274158 233274158 G A ALPPL2 Missense_Mutation p.G434R 0.33 tolerated(0.49) benign(0.006) TCGA-EE-A29L-06 2 233348801 233348801 C G ECEL1 Silent p.R439R 0.34 TCGA-EE-A29L-06 2 233348802 233348802 C T ECEL1 Missense_Mutation p.R439Q 0.35 tolerated(0.06) possibly_damaging(0.614) TCGA-EE-A29L-06 2 233835021 233835021 T A NGEF Nonsense_Mutation p.K96* 0.29 TCGA-EE-A29L-06 2 234545426 234545426 G A UGT1A10 Silent p.Q86Q 0.22 TCGA-EE-A29L-06 2 234601555 234601555 G A UGT1A6 5'UTR 0.28 TCGA-EE-A29L-06 2 234638435 234638435 C T UGT1A3 Silent p.S221S 0.42 TCGA-EE-A29L-06 2 236957795 236957795 C T AGAP1 Nonsense_Mutation p.R662* 0.26 TCGA-EE-A29L-06 2 237300694 237300694 C T IQCA1 Silent p.Q446Q 0.15 TCGA-EE-A29L-06 2 237489786 237489786 C T ACKR3 Silent p.S226S 0.26 TCGA-EE-A29L-06 2 238253147 238253147 C T COL6A3 Missense_Mutation p.G2505E 0.49 unknown(0) TCGA-EE-A29L-06 2 238253148 238253148 C T COL6A3 Missense_Mutation p.G2505R 0.49 unknown(0) TCGA-EE-A29L-06 2 238272037 238272037 G A COL6A3 Silent p.V1974V 0.33 TCGA-EE-A29L-06 2 239025582 239025582 C T ESPNL Silent p.S298S 0.28 TCGA-EE-A29L-06 2 239342322 239342322 G A ASB1 Silent p.E59E 0.14 TCGA-EE-A29L-06 2 241528788 241528788 C T CAPN10 Missense_Mutation p.P57L 0.18 deleterious(0.01) benign(0.299) TCGA-EE-A29L-06 2 241569594 241569594 C T GPR35 Silent p.F106F 0.44 TCGA-EE-A29L-06 2 241570363 241570363 G A GPR35 3'UTR 0.56 TCGA-EE-A29L-06 2 241808596 241808596 G A AGXT Missense_Mutation p.E59K 0.26 deleterious(0) probably_damaging(0.929) TCGA-EE-A29L-06 2 242051780 242051780 G A PASK Silent p.I1143I 0.44 TCGA-EE-A29L-06 2 242080004 242080004 G A PASK Missense_Mutation p.P121S 0.21 tolerated(0.34) possibly_damaging(0.654) TCGA-EE-A29L-06 2 25469116 25469116 A G DNMT3A Missense_Mutation p.Y448H 0.37 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A29L-06 2 26531895 26531895 C T GPR113 3'Flank 0.24 TCGA-EE-A29L-06 2 27258879 27258879 C T TMEM214 Silent p.L227L 0.29 TCGA-EE-A29L-06 2 27465189 27465189 G A CAD Missense_Mutation p.R2039Q 0.29 tolerated(0.16) possibly_damaging(0.845) TCGA-EE-A29L-06 2 27481640 27481640 G A SLC30A3 Silent p.F86F 0.14 TCGA-EE-A29L-06 2 28800975 28800975 G A PLB1 Missense_Mutation p.D479N 0.45 tolerated(0.2) benign(0.042) TCGA-EE-A29L-06 2 29226426 29226426 G A FAM179A Silent p.V236V 0.27 TCGA-EE-A29L-06 2 29519850 29519850 C T ALK Missense_Mutation p.G574E 0.31 tolerated(0.06) probably_damaging(1) TCGA-EE-A29L-06 2 30480424 30480424 C T LBH Silent p.F85F 0.22 TCGA-EE-A29L-06 2 30480466 30480466 G A LBH Silent p.A99A 0.40 TCGA-EE-A29L-06 2 30964829 30964829 C T CAPN13 Missense_Mutation p.G494E 0.23 tolerated(0.97) benign(0.002) TCGA-EE-A29L-06 2 30966359 30966359 G A CAPN13 Silent p.F445F 0.23 TCGA-EE-A29L-06 2 31135209 31135209 C T GALNT14 Splice_Site p.X466_splice 0.16 TCGA-EE-A29L-06 2 31573079 31573079 C T XDH Missense_Mutation p.R881Q 0.23 tolerated(0.23) benign(0.269) TCGA-EE-A29L-06 2 39088225 39088225 G A DHX57 Missense_Mutation p.P443S 0.20 tolerated(0.09) benign(0.004) TCGA-EE-A29L-06 2 40656217 40656217 C T SLC8A1 Missense_Mutation p.E402K 0.33 tolerated(0.13) benign(0.201) TCGA-EE-A29L-06 2 43625187 43625187 G A THADA Nonsense_Mutation p.R1384* 0.46 TCGA-EE-A29L-06 2 43939406 43939406 C T PLEKHH2 Missense_Mutation p.P782S 0.20 tolerated(0.07) possibly_damaging(0.475) TCGA-EE-A29L-06 2 44171034 44171034 C T LRPPRC Splice_Site p.X766_splice 0.25 TCGA-EE-A29L-06 2 45235880 45235880 C T SIX2 Missense_Mutation p.G124S 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 2 45645518 45645518 G A SRBD1 Silent p.I773I 0.25 TCGA-EE-A29L-06 2 48573792 48573792 C T FOXN2 Missense_Mutation p.P147S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 48873632 48873632 G A STON1-GTF2A1L Silent p.E847E 0.41 TCGA-EE-A29L-06 2 48952827 48952827 C T LHCGR Missense_Mutation p.R124Q 0.55 tolerated(0.14) benign(0.301) TCGA-EE-A29L-06 2 49244651 49244651 C T FSHR Silent p.Q117Q 0.40 TCGA-EE-A29L-06 2 54028624 54028624 C T ERLEC1 Missense_Mutation p.P206S 0.48 deleterious(0.01) possibly_damaging(0.703) TCGA-EE-A29L-06 2 54845318 54845318 T C SPTBN1 Silent p.L251L 0.29 TCGA-EE-A29L-06 2 56611548 56611548 A C CCDC85A 3'UTR 0.33 TCGA-EE-A29L-06 2 60688589 60688589 C T BCL11A Silent p.E486E 0.21 TCGA-EE-A29L-06 2 60689025 60689025 C T BCL11A Missense_Mutation p.R341K 0.23 deleterious(0.05) probably_damaging(0.933) TCGA-EE-A29L-06 2 62067001 62067001 G A FAM161A Nonsense_Mutation p.R380* 0.48 TCGA-EE-A29L-06 2 64685597 64685597 C T LGALSL 3'UTR 0.45 TCGA-EE-A29L-06 2 69093550 69093550 C T BMP10 Missense_Mutation p.R163Q 0.17 tolerated(0.21) benign(0.064) TCGA-EE-A29L-06 2 71061152 71061152 C T CD207 Splice_Site p.X64_splice 0.28 TCGA-EE-A29L-06 2 71160080 71160080 C T VAX2 Silent p.L207L 0.23 TCGA-EE-A29L-06 2 71655768 71655768 C T ZNF638 Silent p.F1879F 0.29 TCGA-EE-A29L-06 2 71894640 71894640 G A DYSF Missense_Mutation p.E1818K 0.23 tolerated(0.05) possibly_damaging(0.783) TCGA-EE-A29L-06 2 73491469 73491469 G A FBXO41 Silent p.F581F 0.41 TCGA-EE-A29L-06 2 73677368 73677368 T C ALMS1 Silent p.S1237S 0.44 TCGA-EE-A29L-06 2 73899570 73899570 C T ALMS1P RNA 0.68 TCGA-EE-A29L-06 2 74129555 74129555 C T ACTG2 Silent p.I65I 0.15 TCGA-EE-A29L-06 2 74143731 74143731 C T ACTG2 Missense_Mutation p.H276Y 0.11 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-EE-A29L-06 2 74718670 74718670 C T TTC31 Silent p.P249P 0.48 TCGA-EE-A29L-06 2 77746589 77746589 G A LRRTM4 Missense_Mutation p.R136C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 2 88425751 88425751 C T FABP1 Missense_Mutation p.E62K 0.43 tolerated(0.58) benign(0.043) TCGA-EE-A29L-06 2 89156784 89156784 G A IGKC 3'UTR 0.55 TCGA-EE-A29L-06 2 89459279 89459279 C T IGKV6-21 Missense_Mutation p.E100K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29L-06 2 90260245 90260245 C T IGKV1D-8 Silent p.F116F 0.19 TCGA-EE-A29L-06 2 9474912 9474912 C T ASAP2 Silent p.S244S 0.24 TCGA-EE-A29L-06 2 95954681 95954681 C T PROM2 Silent p.S814S 0.21 TCGA-EE-A29L-06 2 96789615 96789615 G A ASTL Missense_Mutation p.H424Y 0.35 tolerated_low_confidence(0.46) benign(0.25) TCGA-EE-A29L-06 3 100368606 100368606 C T GPR128 Missense_Mutation p.S445F 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 100378648 100378648 C T GPR128 Missense_Mutation p.S647L 0.23 deleterious(0.04) benign(0.014) TCGA-EE-A29L-06 3 101023106 101023106 G A IMPG2 Missense_Mutation p.P129S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 101062652 101062652 G A SENP7 Missense_Mutation p.P662S 0.48 tolerated(0.18) possibly_damaging(0.725) TCGA-EE-A29L-06 3 101232050 101232050 G A SENP7 5'Flank 0.39 TCGA-EE-A29L-06 3 10430007 10430007 G A ATP2B2 Silent p.T287T 0.24 TCGA-EE-A29L-06 3 105470439 105470439 A T CBLB Missense_Mutation p.F197Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-EE-A29L-06 3 108626884 108626884 C T GUCA1C Silent p.K205K 0.26 TCGA-EE-A29L-06 3 109050814 109050814 G A DPPA4 Silent p.I81I 0.31 TCGA-EE-A29L-06 3 10953791 10953791 G A SLC6A11 Missense_Mutation p.G303E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.33 deleterious(0) benign(0.02) TCGA-EE-A29L-06 3 111842472 111842472 C T GCSAM Missense_Mutation p.G125R 0.34 tolerated(0.49) probably_damaging(1) TCGA-EE-A29L-06 3 112184858 112184858 C T BTLA 3'UTR 0.25 TCGA-EE-A29L-06 3 113375879 113375879 G A KIAA2018 Silent p.S1550S 0.35 TCGA-EE-A29L-06 3 113378866 113378866 G A KIAA2018 Missense_Mutation p.L555F 0.34 probably_damaging(0.999) TCGA-EE-A29L-06 3 113378867 113378867 A T KIAA2018 Silent p.I554I 0.34 TCGA-EE-A29L-06 3 113528256 113528256 C T ATP6V1A Silent p.F612F 0.30 TCGA-EE-A29L-06 3 11356878 11356878 C T ATG7 Missense_Mutation p.P197S 0.20 tolerated(0.12) benign(0.067) TCGA-EE-A29L-06 3 118866239 118866239 C T C3orf30 Silent p.D401D 0.32 TCGA-EE-A29L-06 3 119367193 119367193 G A POPDC2 Missense_Mutation p.P308L 0.65 tolerated(0.13) benign(0.002) TCGA-EE-A29L-06 3 120449619 120449619 G A RABL3 Missense_Mutation p.S21L 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A29L-06 3 120495420 120495420 C T GTF2E1 Silent p.A267A 0.23 TCGA-EE-A29L-06 3 121289614 121289614 G A ARGFX Silent p.R18R 0.22 TCGA-EE-A29L-06 3 121305037 121305037 C T ARGFX Missense_Mutation p.P180S 0.30 tolerated(0.41) benign(0.007) TCGA-EE-A29L-06 3 121350806 121350806 C T HCLS1 Missense_Mutation p.D450N 0.62 tolerated(0.13) possibly_damaging(0.822) TCGA-EE-A29L-06 3 121351017 121351017 G A HCLS1 Missense_Mutation p.P419S 0.29 tolerated(0.63) possibly_damaging(0.641) TCGA-EE-A29L-06 3 121417610 121417610 C T GOLGB1 Missense_Mutation p.G587E 0.23 possibly_damaging(0.786) TCGA-EE-A29L-06 3 121822506 121822506 G A CD86 Missense_Mutation p.G71D 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 12195213 12195213 C T TIMP4 Splice_Site p.X160_splice 0.26 TCGA-EE-A29L-06 3 121981042 121981042 G A CASR Missense_Mutation p.S387N 0.22 tolerated(0.28) benign(0.175) TCGA-EE-A29L-06 3 122002548 122002548 A G CASR Missense_Mutation p.N593D 0.35 tolerated(0.71) benign(0) TCGA-EE-A29L-06 3 122423593 122423593 C T PARP14 Nonsense_Mutation p.Q1180* 0.18 TCGA-EE-A29L-06 3 123332814 123332814 G A MYLK 3'UTR 0.38 TCGA-EE-A29L-06 3 123444892 123444892 G A MYLK Missense_Mutation p.S517F 0.32 deleterious(0.04) probably_damaging(0.959) TCGA-EE-A29L-06 3 124515542 124515542 C T ITGB5 Silent p.T462T 0.38 TCGA-EE-A29L-06 3 125833439 125833439 G T ALDH1L1 Silent p.I691I 0.32 TCGA-EE-A29L-06 3 128060384 128060384 C T EEFSEC Silent p.D365D 0.31 TCGA-EE-A29L-06 3 128696984 128696984 C T KIAA1257 Missense_Mutation p.G238S 0.27 tolerated(0.31) benign(0.134) TCGA-EE-A29L-06 3 129140478 129140478 G A EFCAB12 Missense_Mutation p.P73L 0.27 tolerated(0.1) benign(0.013) TCGA-EE-A29L-06 3 129279270 129279270 G A PLXND1 Missense_Mutation p.P1679L 0.40 deleterious(0) possibly_damaging(0.861) TCGA-EE-A29L-06 3 13415266 13415266 C T NUP210 Silent p.V513V 0.53 TCGA-EE-A29L-06 3 134851795 134851795 C T EPHB1 Missense_Mutation p.P401S 0.36 tolerated(0.13) benign(0.006) TCGA-EE-A29L-06 3 13613143 13613143 C T FBLN2 Missense_Mutation p.P430S 0.22 tolerated(0.09) benign(0.207) TCGA-EE-A29L-06 3 140123497 140123497 G A CLSTN2 Missense_Mutation p.D176N 0.32 tolerated(0.06) possibly_damaging(0.613) TCGA-EE-A29L-06 3 1424755 1424755 G A CNTN6 Missense_Mutation p.E766K 0.16 deleterious(0.01) benign(0.22) TCGA-EE-A29L-06 3 146177693 146177693 C T PLSCR2 Nonsense_Mutation p.W73* 0.53 TCGA-EE-A29L-06 3 148586804 148586804 G A CPA3 Missense_Mutation p.D83N 0.37 tolerated(0.2) possibly_damaging(0.614) TCGA-EE-A29L-06 3 148601524 148601524 C T CPA3 Silent p.I301I 0.30 TCGA-EE-A29L-06 3 148928053 148928053 C T CP Missense_Mutation p.G170R 0.29 tolerated(0.24) benign(0.33) TCGA-EE-A29L-06 3 14939518 14939518 C T FGD5 Silent p.I994I 0.33 TCGA-EE-A29L-06 3 150916724 150916724 C T GPR171 Missense_Mutation p.M150I 0.28 tolerated(0.43) benign(0.094) TCGA-EE-A29L-06 3 151474812 151474812 C T AADACL2 Silent p.I212I 0.48 TCGA-EE-A29L-06 3 154007607 154007607 G A DHX36 Missense_Mutation p.P608L 0.28 deleterious(0) possibly_damaging(0.77) TCGA-EE-A29L-06 3 154147234 154147234 G A GPR149 Silent p.S57S 0.28 TCGA-EE-A29L-06 3 154836577 154836577 G A MME Missense_Mutation p.E233K 0.50 tolerated(0.58) benign(0.091) TCGA-EE-A29L-06 3 155215207 155215207 C T PLCH1 Splice_Site p.X587_splice 0.32 TCGA-EE-A29L-06 3 155652728 155652728 C T GMPS Missense_Mutation p.P567L 0.31 tolerated(0.23) benign(0.012) TCGA-EE-A29L-06 3 157816015 157816015 G A SHOX2 Missense_Mutation p.P290L 0.35 tolerated(0.13) probably_damaging(0.951) TCGA-EE-A29L-06 3 16419362 16419362 T - RFTN1 Frame_Shift_Del p.E230Gfs*25 0.34 TCGA-EE-A29L-06 3 167031864 167031864 C T ZBBX Missense_Mutation p.E439K 0.36 tolerated(0.2) benign(0.093) TCGA-EE-A29L-06 3 169578450 169578450 C T LRRC31 Missense_Mutation p.G129E 0.54 deleterious(0) probably_damaging(0.978) TCGA-EE-A29L-06 3 169578451 169578451 C T LRRC31 Missense_Mutation p.G129R 0.54 tolerated(0.06) possibly_damaging(0.532) TCGA-EE-A29L-06 3 17053427 17053427 C T PLCL2 Silent p.S737S 0.24 TCGA-EE-A29L-06 3 178947158 178947158 G A PIK3CA Missense_Mutation p.G865D 0.36 tolerated(0.06) probably_damaging(0.973) TCGA-EE-A29L-06 3 182925542 182925542 G A MCF2L2 Missense_Mutation p.R856C 0.32 deleterious(0.02) possibly_damaging(0.772) TCGA-EE-A29L-06 3 184035276 184035276 C T EIF4G1 Silent p.I112I 0.29 TCGA-EE-A29L-06 3 186015231 186015231 C T DGKG Missense_Mutation p.E118K 0.29 tolerated(0.87) benign(0.047) TCGA-EE-A29L-06 3 186370497 186370497 G A FETUB 3'UTR 0.33 TCGA-EE-A29L-06 3 187003734 187003734 G A MASP1 Missense_Mutation p.S39F 0.28 deleterious(0.02) benign(0.426) TCGA-EE-A29L-06 3 189349287 189349287 C T TP63 5'UTR 0.19 TCGA-EE-A29L-06 3 189587175 189587175 G A TP63 Missense_Mutation p.D398N 0.43 deleterious(0) possibly_damaging(0.493) TCGA-EE-A29L-06 3 189688623 189688623 C T LEPREL1 Missense_Mutation p.M625I 0.18 tolerated(0.19) benign(0.065) TCGA-EE-A29L-06 3 189706745 189706745 C T LEPREL1 Silent p.E302E 0.31 TCGA-EE-A29L-06 3 191861746 191861746 G A FGF12 3'UTR 0.23 TCGA-EE-A29L-06 3 193068932 193068932 C T ATP13A5 Missense_Mutation p.G222D 0.21 tolerated(0.94) benign(0.157) TCGA-EE-A29L-06 3 19554559 19554559 C T KCNH8 Missense_Mutation p.S726F 0.27 deleterious(0.03) benign(0.303) TCGA-EE-A29L-06 3 195615303 195615303 G A TNK2 Missense_Mutation p.R116W 0.27 deleterious(0) probably_damaging(0.91) TCGA-EE-A29L-06 3 19575308 19575308 C T KCNH8 Missense_Mutation p.P1014L 0.21 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-EE-A29L-06 3 196054427 196054427 C T TM4SF19 Missense_Mutation p.R12Q 0.27 tolerated(0.08) benign(0.316) TCGA-EE-A29L-06 3 196387578 196387578 C T NRROS Missense_Mutation p.S355F 0.23 deleterious(0.02) benign(0.06) TCGA-EE-A29L-06 3 196737597 196737597 C T MFI2 Silent p.L434L 0.23 TCGA-EE-A29L-06 3 196746418 196746418 G A MFI2 Intron 0.34 TCGA-EE-A29L-06 3 196746419 196746419 G A MFI2 Intron 0.35 TCGA-EE-A29L-06 3 21466984 21466984 C T ZNF385D Silent p.Q284Q 0.18 TCGA-EE-A29L-06 3 21552420 21552420 C T ZNF385D Silent p.K124K 0.25 TCGA-EE-A29L-06 3 24164320 24164320 G A THRB 3'UTR 0.29 TCGA-EE-A29L-06 3 29476339 29476339 A G RBMS3 Missense_Mutation p.T61A 0.52 deleterious(0) probably_damaging(0.989) TCGA-EE-A29L-06 3 3134004 3134004 C T IL5RA Missense_Mutation p.D300N 0.21 tolerated(0.95) benign(0.013) TCGA-EE-A29L-06 3 32933286 32933286 C T TRIM71 Nonsense_Mutation p.R864* 0.54 TCGA-EE-A29L-06 3 35729321 35729321 G A ARPP21 Missense_Mutation p.D118N 0.33 tolerated(0.1) possibly_damaging(0.637) TCGA-EE-A29L-06 3 35786040 35786040 C T ARPP21 Intron 0.24 TCGA-EE-A29L-06 3 36570432 36570432 C T STAC Silent p.F355F 0.20 TCGA-EE-A29L-06 3 36897504 36897504 C T TRANK1 Missense_Mutation p.D1193N 0.43 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29L-06 3 38207428 38207428 G A OXSR1 Missense_Mutation p.E21K 0.26 tolerated(0.18) benign(0.05) TCGA-EE-A29L-06 3 38753783 38753783 G A SCN10A Missense_Mutation p.L1320F 0.22 tolerated(0.23) possibly_damaging(0.694) TCGA-EE-A29L-06 3 38753784 38753784 G A SCN10A Silent p.S1319S 0.21 TCGA-EE-A29L-06 3 38768117 38768117 C T SCN10A Missense_Mutation p.E1023K 0.27 tolerated(0.1) benign(0.328) TCGA-EE-A29L-06 3 38966958 38966958 G A SCN11A Silent p.P220P 0.18 TCGA-EE-A29L-06 3 38968341 38968341 G A SCN11A Silent p.F190F 0.22 TCGA-EE-A29L-06 3 39185386 39185386 C T CSRNP1 Silent p.R310R 0.51 TCGA-EE-A29L-06 3 39225952 39225952 G A XIRP1 Missense_Mutation p.S1662F 0.24 tolerated(0.06) benign(0.002) TCGA-EE-A29L-06 3 39227007 39227007 C T XIRP1 Silent p.K1310K 0.24 TCGA-EE-A29L-06 3 42775086 42775086 C T CCDC13 Missense_Mutation p.G463R 0.21 tolerated(0.09) possibly_damaging(0.718) TCGA-EE-A29L-06 3 43640123 43640123 G A ANO10 Nonsense_Mutation p.Q125* 0.11 TCGA-EE-A29L-06 3 45943249 45943249 A T CCR9 Missense_Mutation p.R323S 0.18 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29L-06 3 46245447 46245447 C T CCR1 Missense_Mutation p.E120K 0.24 tolerated(0.08) benign(0.223) TCGA-EE-A29L-06 3 46307076 46307076 C T CCR3 Nonsense_Mutation p.R164* 0.26 TCGA-EE-A29L-06 3 46542035 46542035 G A RTP3 Silent p.L115L 0.45 TCGA-EE-A29L-06 3 46944973 46944973 C T PTH1R Missense_Mutation p.H537Y 0.24 tolerated(1) benign(0.001) TCGA-EE-A29L-06 3 4714885 4714885 C T ITPR1 Missense_Mutation p.S742L 0.21 deleterious(0) probably_damaging(0.989) TCGA-EE-A29L-06 3 47453658 47453658 C G PTPN23 Missense_Mutation p.P1383R 0.25 possibly_damaging(0.84) TCGA-EE-A29L-06 3 48616938 48616938 C T COL7A1 Missense_Mutation p.G1749E 0.25 unknown(0) TCGA-EE-A29L-06 3 48621382 48621382 G A COL7A1 Missense_Mutation p.P1410L 0.27 unknown(0) TCGA-EE-A29L-06 3 49043268 49043268 C T P4HTM Missense_Mutation p.P439S 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29L-06 3 49215944 49215944 T C C3orf84 Missense_Mutation p.K57E 0.22 tolerated(0.1) benign(0.084) TCGA-EE-A29L-06 3 49314265 49314265 G A C3orf62 Missense_Mutation p.S14F 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 3 49570616 49570616 C T DAG1 Missense_Mutation p.P891L 0.26 deleterious(0) unknown(0) TCGA-EE-A29L-06 3 49695089 49695089 C T BSN Silent p.I2700I 0.24 TCGA-EE-A29L-06 3 49770250 49770250 G A IP6K1 Missense_Mutation p.S197F 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 3 5024874 5024874 G A BHLHE40 Missense_Mutation p.G246R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 5024875 5024875 G A BHLHE40 Missense_Mutation p.G246E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 50413430 50413430 G A CACNA2D2 Silent p.F579F 0.20 TCGA-EE-A29L-06 3 50471821 50471821 T A CACNA2D2 Missense_Mutation p.N110Y 0.55 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A29L-06 3 51297624 51297624 G A DOCK3 Missense_Mutation p.R741Q 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29L-06 3 51394464 51394464 C T DOCK3 Silent p.I1525I 0.47 TCGA-EE-A29L-06 3 52403981 52403981 C T DNAH1 Silent p.P2028P 0.25 TCGA-EE-A29L-06 3 52557298 52557298 G A STAB1 Missense_Mutation p.D2361N 0.22 tolerated(0.26) benign(0.031) TCGA-EE-A29L-06 3 53707790 53707790 G A CACNA1D Silent p.L389L 0.20 TCGA-EE-A29L-06 3 53796022 53796022 C T CACNA1D Intron 0.53 TCGA-EE-A29L-06 3 54933883 54933883 C T CACNA2D3 Missense_Mutation p.P813S 0.31 tolerated(0.18) possibly_damaging(0.827) TCGA-EE-A29L-06 3 54958920 54958920 G A LRTM1 Silent p.L110L 0.75 TCGA-EE-A29L-06 3 55002514 55002514 G A CACNA2D3 Silent p.R829R 0.24 TCGA-EE-A29L-06 3 55052318 55052318 G A CACNA2D3 Silent p.G987G 0.52 TCGA-EE-A29L-06 3 55504257 55504257 C T WNT5A Missense_Mutation p.E336K 0.25 tolerated(0.1) possibly_damaging(0.608) TCGA-EE-A29L-06 3 56662636 56662636 G A FAM208A Missense_Mutation p.L1252F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 3 58629399 58629399 G A FAM3D Silent p.A104A 0.17 TCGA-EE-A29L-06 3 63973943 63973943 C T ATXN7 Missense_Mutation p.S435F 0.30 tolerated(0.08) possibly_damaging(0.708) TCGA-EE-A29L-06 3 63973944 63973944 C T ATXN7 Silent p.S435S 0.31 TCGA-EE-A29L-06 3 64666919 64666919 G A ADAMTS9 Nonsense_Mutation p.Q213* 0.20 TCGA-EE-A29L-06 3 65350400 65350400 C T MAGI1 Silent p.R1097R 0.40 TCGA-EE-A29L-06 3 65479266 65479266 C T MAGI1 Silent p.V157V 0.22 TCGA-EE-A29L-06 3 66457825 66457825 G A LRIG1 Silent p.S342S 0.25 TCGA-EE-A29L-06 3 69028912 69028912 C T EOGT Missense_Mutation p.R330K 0.60 tolerated(0.71) possibly_damaging(0.729) TCGA-EE-A29L-06 3 71026984 71026984 G A FOXP1 Missense_Mutation p.S450L 0.26 deleterious(0.04) possibly_damaging(0.614) TCGA-EE-A29L-06 3 74344349 74344349 G A CNTN3 Silent p.L814L 0.20 TCGA-EE-A29L-06 3 7620609 7620609 C T GRM7 Silent p.A672A 0.28 TCGA-EE-A29L-06 3 77657030 77657030 C T ROBO2 Missense_Mutation p.P1089L 0.24 tolerated(0.46) possibly_damaging(0.713) TCGA-EE-A29L-06 3 87018183 87018183 C T VGLL3 Missense_Mutation p.G165E 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29L-06 3 9804897 9804897 C T CAMK1 Silent p.K72K 0.23 TCGA-EE-A29L-06 3 9831419 9831419 G A TADA3 Missense_Mutation p.P146S 0.44 tolerated(0.21) benign(0.389) TCGA-EE-A29L-06 3 9883559 9883559 G A RPUSD3 Intron 0.26 TCGA-EE-A29L-06 4 102946546 102946546 C T BANK1 Missense_Mutation p.P492S 0.60 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A29L-06 4 103870499 103870499 G A SLC9B1 Silent p.F99F 0.29 TCGA-EE-A29L-06 4 104067125 104067125 C T CENPE Missense_Mutation p.G1425E 0.23 benign(0) TCGA-EE-A29L-06 4 104640632 104640632 G A TACR3 Silent p.P67P 0.38 TCGA-EE-A29L-06 4 111397858 111397858 C T ENPEP Silent p.F96F 0.28 TCGA-EE-A29L-06 4 113348783 113348783 G A ALPK1 Missense_Mutation p.D253N 0.27 deleterious(0) probably_damaging(0.965) TCGA-EE-A29L-06 4 115767138 115767138 G A NDST4 Silent p.F652F 0.60 TCGA-EE-A29L-06 4 115858526 115858526 G A NDST4 Missense_Mutation p.P452L 0.62 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29L-06 4 119948498 119948498 C T SYNPO2 Missense_Mutation p.S325F 0.27 tolerated(0.05) benign(0.046) TCGA-EE-A29L-06 4 119979005 119979005 C T SYNPO2 Silent p.S1234S 0.39 TCGA-EE-A29L-06 4 123147970 123147970 C T KIAA1109 Missense_Mutation p.R968C 0.51 probably_damaging(0.983) TCGA-EE-A29L-06 4 123207806 123207806 C T KIAA1109 Missense_Mutation p.P3050S 0.24 probably_damaging(0.998) TCGA-EE-A29L-06 4 123663614 123663614 T G BBS12 Silent p.L189L 0.32 TCGA-EE-A29L-06 4 126373056 126373056 C T FAT4 Missense_Mutation p.P3629S 0.60 possibly_damaging(0.493) TCGA-EE-A29L-06 4 13606324 13606324 G A BOD1L1 Missense_Mutation p.P734S 0.35 benign(0.001) TCGA-EE-A29L-06 4 138450973 138450973 C T PCDH18 Missense_Mutation p.G757E 0.42 deleterious(0.02) probably_damaging(0.917) TCGA-EE-A29L-06 4 138453134 138453134 C T PCDH18 Missense_Mutation p.E37K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 4 141578692 141578692 G A TBC1D9 Silent p.T732T 0.33 TCGA-EE-A29L-06 4 141600298 141600298 G A TBC1D9 Silent p.L217L 0.32 TCGA-EE-A29L-06 4 147561842 147561842 C A POU4F2 Missense_Mutation p.S371Y 0.34 deleterious(0) possibly_damaging(0.722) TCGA-EE-A29L-06 4 148461043 148461043 C T EDNRA Silent p.S325S 0.34 TCGA-EE-A29L-06 4 151119159 151119159 C T DCLK2 Missense_Mutation p.R289C 0.24 deleterious(0) probably_damaging(0.979) TCGA-EE-A29L-06 4 151356749 151356749 C A LRBA Missense_Mutation p.D2356Y 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 4 153690662 153690662 A T TIGD4 Missense_Mutation p.L499I 0.27 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A29L-06 4 155505773 155505773 C T FGA Missense_Mutation p.E702K 0.29 tolerated(1) benign(0.005) TCGA-EE-A29L-06 4 156136174 156136174 G A NPY2R Silent p.K361K 0.25 TCGA-EE-A29L-06 4 156268978 156268978 G A MAP9 Missense_Mutation p.P634L 0.40 deleterious(0) probably_damaging(0.98) TCGA-EE-A29L-06 4 156631897 156631897 G A GUCY1A3 Missense_Mutation p.D194N 0.19 tolerated(0.05) possibly_damaging(0.845) TCGA-EE-A29L-06 4 158060009 158060009 C T GLRB Missense_Mutation p.P220L 0.62 deleterious(0) probably_damaging(0.939) TCGA-EE-A29L-06 4 159529150 159529150 C T RXFP1 Missense_Mutation p.S164F 0.56 tolerated(0.75) benign(0.014) TCGA-EE-A29L-06 4 16034954 16034954 G A PROM1 Missense_Mutation p.S161F 0.58 tolerated(0.21) benign(0.22) TCGA-EE-A29L-06 4 164246629 164246629 G A NPY1R Silent p.F327F 0.22 TCGA-EE-A29L-06 4 164246778 164246778 G A NPY1R Missense_Mutation p.P278S 0.67 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 4 164394221 164394221 C T TKTL2 Silent p.V222V 0.34 TCGA-EE-A29L-06 4 169188838 169188838 G A DDX60 Silent p.L978L 0.27 TCGA-EE-A29L-06 4 169351758 169351758 G A DDX60L Silent p.F516F 0.35 TCGA-EE-A29L-06 4 173730571 173730571 C T GALNTL6 Missense_Mutation p.R205C 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A29L-06 4 17528501 17528501 G A CLRN2 Silent p.T165T 0.29 TCGA-EE-A29L-06 4 178231013 178231013 C T NEIL3 5'UTR 0.40 TCGA-EE-A29L-06 4 178256880 178256880 C T NEIL3 Missense_Mutation p.P106L 0.31 deleterious(0.01) benign(0.157) TCGA-EE-A29L-06 4 184572254 184572254 G A RWDD4 Silent p.A82A 0.27 TCGA-EE-A29L-06 4 185311898 185311898 C T IRF2 Missense_Mutation p.E234K 0.22 tolerated(0.11) probably_damaging(0.986) TCGA-EE-A29L-06 4 186545032 186545032 G A SORBS2 Silent p.F613F 0.31 TCGA-EE-A29L-06 4 189060977 189060977 G A TRIML1 Missense_Mutation p.E89K 0.61 tolerated(0.83) benign(0.018) TCGA-EE-A29L-06 4 20525790 20525790 C T SLIT2 Silent p.F476F 0.24 TCGA-EE-A29L-06 4 23830201 23830201 C T PPARGC1A Silent p.A193A 0.54 TCGA-EE-A29L-06 4 25677759 25677759 C T SLC34A2 Silent p.I487I 0.33 TCGA-EE-A29L-06 4 25783914 25783914 C T SEL1L3 Missense_Mutation p.G803R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 4 26483310 26483310 G A CCKAR Silent p.L413L 0.32 TCGA-EE-A29L-06 4 26483788 26483788 C T CCKAR Silent p.R253R 0.30 TCGA-EE-A29L-06 4 26491787 26491787 G A CCKAR Missense_Mutation p.P35S 0.27 tolerated(0.31) benign(0.006) TCGA-EE-A29L-06 4 3015443 3015443 G A GRK4 Missense_Mutation p.G210E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 4 3429905 3429905 C T RGS12 Intron 0.30 TCGA-EE-A29L-06 4 36069745 36069745 G A ARAP2 Silent p.F1633F 0.31 TCGA-EE-A29L-06 4 36212334 36212334 C T ARAP2 Missense_Mutation p.E389K 0.26 tolerated(0.23) benign(0.006) TCGA-EE-A29L-06 4 38995404 38995404 C T TMEM156 Silent p.P191P 0.32 TCGA-EE-A29L-06 4 39000348 39000348 G A TMEM156 Silent p.I90I 0.32 TCGA-EE-A29L-06 4 39247026 39247026 C T WDR19 Missense_Mutation p.P895S 0.24 tolerated(0.29) benign(0.389) TCGA-EE-A29L-06 4 42895554 42895554 G A GRXCR1 Missense_Mutation p.G91S 0.56 tolerated(0.57) benign(0.021) TCGA-EE-A29L-06 4 44626725 44626725 G A YIPF7 Silent p.N191N 0.21 TCGA-EE-A29L-06 4 44652082 44652082 G A YIPF7 Silent p.Y36Y 0.73 TCGA-EE-A29L-06 4 46043158 46043158 G A GABRG1 Silent p.F415F 0.15 TCGA-EE-A29L-06 4 47939467 47939467 T A CNGA1 Missense_Mutation p.K417N 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 4 48147207 48147207 G A TEC Silent p.F453F 0.31 TCGA-EE-A29L-06 4 55129979 55129979 C T PDGFRA Silent p.S171S 0.20 TCGA-EE-A29L-06 4 56465332 56465337 CTTCTT - NMU In_Frame_Del p.R168_R169del 0.22 TCGA-EE-A29L-06 4 57860960 57860960 T A POLR2B Missense_Mutation p.D168E 0.49 tolerated(0.76) benign(0.119) TCGA-EE-A29L-06 4 57860961 57860961 C A POLR2B Missense_Mutation p.R169S 0.49 tolerated(0.32) possibly_damaging(0.737) TCGA-EE-A29L-06 4 57896476 57896476 G A POLR2B Missense_Mutation p.V1116I 0.57 tolerated(0.27) benign(0.012) TCGA-EE-A29L-06 4 6279305 6279305 C T WFS1 Silent p.P41P 0.31 TCGA-EE-A29L-06 4 62813848 62813848 T A LPHN3 Missense_Mutation p.S819T 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A29L-06 4 650810 650810 G A PDE6B Missense_Mutation p.E419K 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29L-06 4 68704004 68704004 G A TMPRSS11D Nonsense_Mutation p.Q121* 0.17 TCGA-EE-A29L-06 4 68935687 68935687 G A TMPRSS11F Missense_Mutation p.R185C 0.57 tolerated(1) probably_damaging(0.991) TCGA-EE-A29L-06 4 69093621 69093621 C T TMPRSS11B 3'UTR 0.64 TCGA-EE-A29L-06 4 69097034 69097034 G A TMPRSS11B Silent p.S191S 0.41 TCGA-EE-A29L-06 4 69972913 69972913 G A UGT2B7 Silent p.G341G 0.26 TCGA-EE-A29L-06 4 70080499 70080499 G A UGT2B11 5'Flank 0.42 TCGA-EE-A29L-06 4 70156526 70156526 C T UGT2B28 Missense_Mutation p.P436L 0.60 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A29L-06 4 7043099 7043099 G A CCDC96 Missense_Mutation p.R523W 0.27 deleterious(0) possibly_damaging(0.86) TCGA-EE-A29L-06 4 71467169 71467169 T G AMBN Missense_Mutation p.L110R 0.31 tolerated(0.06) possibly_damaging(0.685) TCGA-EE-A29L-06 4 71630223 71630223 C T RUFY3 Missense_Mutation p.R168C 0.27 deleterious(0.01) possibly_damaging(0.66) TCGA-EE-A29L-06 4 72316957 72316957 C T SLC4A4 Missense_Mutation p.H421Y 0.23 deleterious(0.04) benign(0.003) TCGA-EE-A29L-06 4 74303947 74303947 A T AFP Missense_Mutation p.K65I 0.35 deleterious(0) possibly_damaging(0.829) TCGA-EE-A29L-06 4 77816833 77816833 C T SOWAHB Missense_Mutation p.G724R 0.35 deleterious(0) probably_damaging(0.953) TCGA-EE-A29L-06 4 78808408 78808408 G T MRPL1 Missense_Mutation p.G174V 0.27 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A29L-06 4 79173594 79173594 C T FRAS1 Missense_Mutation p.H120Y 0.30 benign(0.014) TCGA-EE-A29L-06 4 79308840 79308840 G A FRAS1 Silent p.V1320V 0.48 TCGA-EE-A29L-06 4 79429917 79429917 A G FRAS1 Silent p.E3179E 0.19 TCGA-EE-A29L-06 4 8089972 8089972 C T ABLIM2 Silent p.G126G 0.70 TCGA-EE-A29L-06 4 81124550 81124550 G A PRDM8 Missense_Mutation p.R645K 0.27 deleterious(0) probably_damaging(0.956) TCGA-EE-A29L-06 4 81866028 81866028 G A C4orf22 Missense_Mutation p.D198N 0.54 tolerated(0.23) benign(0.047) TCGA-EE-A29L-06 4 83411342 83411342 C T TMEM150C Missense_Mutation p.G138E 0.61 tolerated(0.27) probably_damaging(0.994) TCGA-EE-A29L-06 4 84352866 84352866 T G HELQ Missense_Mutation p.E749A 0.23 deleterious(0.01) benign(0.206) TCGA-EE-A29L-06 4 85611810 85611810 G A WDFY3 Missense_Mutation p.T3071I 0.37 tolerated(0.49) benign(0.001) TCGA-EE-A29L-06 4 88973229 88973229 C T PKD2 Silent p.F545F 0.64 TCGA-EE-A29L-06 4 89039399 89039399 C T ABCG2 Missense_Mutation p.G235R 0.31 deleterious(0.02) possibly_damaging(0.743) TCGA-EE-A29L-06 4 89390312 89390312 C T HERC5 Missense_Mutation p.S380L 0.58 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29L-06 4 89628082 89628082 G A HERC3 Missense_Mutation p.D1042N 0.32 deleterious(0.01) possibly_damaging(0.855) TCGA-EE-A29L-06 4 90816074 90816074 G A MMRN1 5'UTR 0.23 TCGA-EE-A29L-06 4 90849068 90849068 G A MMRN1 Missense_Mutation p.E360K 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 5 100147679 100147679 C T ST8SIA4 Missense_Mutation p.D318N 0.65 possibly_damaging(0.868) TCGA-EE-A29L-06 5 101834414 101834414 C T SLCO6A1 Silent p.G45G 0.35 TCGA-EE-A29L-06 5 108673046 108673046 G A PJA2 Silent p.C671C 0.19 TCGA-EE-A29L-06 5 10981885 10981885 C T CTNND2 Silent p.Q1139Q 0.29 TCGA-EE-A29L-06 5 11159724 11159724 G A CTNND2 Missense_Mutation p.S708L 0.57 tolerated(0.06) benign(0.021) TCGA-EE-A29L-06 5 114466515 114466515 G A TRIM36 Missense_Mutation p.R536C 0.56 tolerated(0.14) possibly_damaging(0.54) TCGA-EE-A29L-06 5 115327846 115327846 A C AQPEP Missense_Mutation p.N378H 0.32 tolerated(0.13) possibly_damaging(0.631) TCGA-EE-A29L-06 5 115783050 115783050 G A SEMA6A Silent p.I784I 0.30 TCGA-EE-A29L-06 5 120021865 120021865 C T PRR16 Missense_Mutation p.P103S 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29L-06 5 120022262 120022262 C T PRR16 Missense_Mutation p.P235L 0.50 tolerated_low_confidence(0.07) benign(0.011) TCGA-EE-A29L-06 5 1216766 1216766 C T SLC6A19 Silent p.F327F 0.33 TCGA-EE-A29L-06 5 122337794 122337794 G A SNX24 Intron 0.79 TCGA-EE-A29L-06 5 125809035 125809035 C T GRAMD3 Missense_Mutation p.S169F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 5 126734473 126734473 C T MEGF10 Silent p.C255C 0.72 TCGA-EE-A29L-06 5 127674668 127674668 G A FBN2 Silent p.F1143F 0.61 TCGA-EE-A29L-06 5 127681079 127681079 C T FBN2 Missense_Mutation p.D1063N 0.29 deleterious(0.01) benign(0.317) TCGA-EE-A29L-06 5 129037128 129037128 G A ADAMTS19 Missense_Mutation p.G995E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 5 13718991 13718991 C T DNAH5 Missense_Mutation p.G4167S 0.19 probably_damaging(0.959) TCGA-EE-A29L-06 5 13719030 13719030 G A DNAH5 Missense_Mutation p.P4154S 0.15 possibly_damaging(0.876) TCGA-EE-A29L-06 5 13727616 13727616 C T DNAH5 Silent p.Q4011Q 0.24 TCGA-EE-A29L-06 5 13727654 13727654 G A DNAH5 Missense_Mutation p.L3999F 0.55 possibly_damaging(0.849) TCGA-EE-A29L-06 5 137289982 137289982 G A FAM13B Missense_Mutation p.H509Y 0.23 tolerated(0.23) benign(0.001) TCGA-EE-A29L-06 5 137588633 137588633 G A GFRA3 3'UTR 0.50 TCGA-EE-A29L-06 5 13759068 13759068 G A DNAH5 Missense_Mutation p.R3436C 0.28 possibly_damaging(0.898) TCGA-EE-A29L-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.30 benign(0) TCGA-EE-A29L-06 5 13776775 13776775 T A DNAH5 Missense_Mutation p.N3049I 0.37 possibly_damaging(0.904) TCGA-EE-A29L-06 5 13811764 13811764 G A DNAH5 Missense_Mutation p.P2467S 0.65 benign(0.005) TCGA-EE-A29L-06 5 13845071 13845071 G A DNAH5 Missense_Mutation p.R1716W 0.40 benign(0.092) TCGA-EE-A29L-06 5 139193033 139193033 G A PSD2 Missense_Mutation p.D171N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 5 13920608 13920608 C A DNAH5 Missense_Mutation p.W260L 0.21 possibly_damaging(0.637) TCGA-EE-A29L-06 5 13928280 13928280 C T DNAH5 Missense_Mutation p.R67K 0.21 benign(0.067) TCGA-EE-A29L-06 5 140041216 140041216 G A IK Silent p.K475K 0.63 TCGA-EE-A29L-06 5 140050745 140050745 G A WDR55 3'UTR 0.70 TCGA-EE-A29L-06 5 140216247 140216247 C T PCDHA7 Missense_Mutation p.S760F 0.32 deleterious_low_confidence(0.01) benign(0.077) TCGA-EE-A29L-06 5 140221000 140221000 C T PCDHA8 Missense_Mutation p.H32Y 0.27 deleterious_low_confidence(0) benign(0.24) TCGA-EE-A29L-06 5 140221068 140221068 G A PCDHA8 Silent p.L54L 0.34 TCGA-EE-A29L-06 5 140223341 140223341 G A PCDHA8 Intron 0.21 TCGA-EE-A29L-06 5 140237415 140237415 C T PCDHA10 Silent p.R594R 0.38 TCGA-EE-A29L-06 5 140248820 140248820 C T PCDHA11 Silent p.F44F 0.34 TCGA-EE-A29L-06 5 140249705 140249705 C T PCDHA11 Silent p.I339I 0.62 TCGA-EE-A29L-06 5 140256462 140256462 C T PCDHA12 Missense_Mutation p.P469S 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.658) TCGA-EE-A29L-06 5 140431494 140431494 C T PCDHB1 Missense_Mutation p.P147S 0.63 tolerated(0.23) probably_damaging(0.999) TCGA-EE-A29L-06 5 140501824 140501824 G A PCDHB4 Missense_Mutation p.D82N 0.28 tolerated_low_confidence(0.27) benign(0.079) TCGA-EE-A29L-06 5 140682655 140682655 C T SLC25A2 Missense_Mutation p.E260K 0.24 deleterious(0) possibly_damaging(0.558) TCGA-EE-A29L-06 5 140723605 140723605 C T PCDHGA3 Missense_Mutation p.T2I 0.30 tolerated_low_confidence(0.24) benign(0.003) TCGA-EE-A29L-06 5 140723606 140723606 C T PCDHGA3 Silent p.T2T 0.29 TCGA-EE-A29L-06 5 140751143 140751143 C T PCDHGB3 Silent p.I394I 0.27 TCGA-EE-A29L-06 5 140755310 140755310 G A PCDHGA6 Missense_Mutation p.D554N 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29L-06 5 140784900 140784900 C T PCDHGA9 Missense_Mutation p.S794F 0.34 deleterious_low_confidence(0.01) benign(0.115) TCGA-EE-A29L-06 5 140953720 140953720 G A DIAPH1 Missense_Mutation p.S566F 0.40 unknown(0) TCGA-EE-A29L-06 5 141318137 141318137 C T KIAA0141 Missense_Mutation p.P454L 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 5 143853695 143853696 - A KCTD16 3'UTR 0.22 TCGA-EE-A29L-06 5 14387901 14387901 C A TRIO Silent p.R1276R 0.47 TCGA-EE-A29L-06 5 145393508 145393508 C T SH3RF2 Missense_Mutation p.P315S 0.60 tolerated(0.15) possibly_damaging(0.601) TCGA-EE-A29L-06 5 147585614 147585614 G A SPINK6 Missense_Mutation p.G25E 0.63 tolerated(0.42) benign(0.018) TCGA-EE-A29L-06 5 149008485 149008485 G A ARHGEF37 Missense_Mutation p.E592K 0.31 tolerated(0.18) benign(0.197) TCGA-EE-A29L-06 5 150028561 150028561 C T SYNPO Missense_Mutation p.P486S 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 5 150102495 150102495 G A DCTN4 Silent p.I301I 0.77 TCGA-EE-A29L-06 5 150945775 150945775 G A FAT2 Silent p.F906F 0.21 TCGA-EE-A29L-06 5 150946634 150946634 G A FAT2 Missense_Mutation p.S620F 0.59 benign(0.236) TCGA-EE-A29L-06 5 151304061 151304061 A G GLRA1 Missense_Mutation p.F17S 0.31 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A29L-06 5 151784643 151784643 G A NMUR2 Missense_Mutation p.S11F 0.23 deleterious(0) benign(0.06) TCGA-EE-A29L-06 5 153029980 153029980 G A GRIA1 Missense_Mutation p.G194E 0.40 tolerated(0.14) benign(0.062) TCGA-EE-A29L-06 5 153077667 153077667 G A GRIA1 Missense_Mutation p.D410N 0.39 tolerated(0.18) benign(0.197) TCGA-EE-A29L-06 5 156592780 156592780 C T FAM71B Missense_Mutation p.D134N 0.26 tolerated(0.3) benign(0.08) TCGA-EE-A29L-06 5 156760402 156760402 C T CYFIP2 Missense_Mutation p.S752F 0.32 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 5 156929909 156929909 G A ADAM19 Missense_Mutation p.L404F 0.32 deleterious(0) probably_damaging(0.976) TCGA-EE-A29L-06 5 158141181 158141181 G A EBF1 Missense_Mutation p.L379F 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 5 158699032 158699032 C T UBLCP1 Silent p.D150D 0.27 TCGA-EE-A29L-06 5 159661850 159661850 G A FABP6 Silent p.G138G 0.21 TCGA-EE-A29L-06 5 160721205 160721205 C T GABRB2 Silent p.L474L 0.15 TCGA-EE-A29L-06 5 161113235 161113235 G A GABRA6 Splice_Site p.X13_splice 0.36 TCGA-EE-A29L-06 5 161119131 161119131 G A GABRA6 Silent p.R337R 0.32 TCGA-EE-A29L-06 5 167420183 167420183 C T TENM2 Silent p.F394F 0.37 TCGA-EE-A29L-06 5 167674098 167674098 G A TENM2 Missense_Mutation p.V2052I 0.58 tolerated(0.6) probably_damaging(0.995) TCGA-EE-A29L-06 5 167868776 167868776 G A WWC1 Silent p.K790K 0.28 TCGA-EE-A29L-06 5 168093514 168093514 G A SLIT3 Missense_Mutation p.S1506L 0.44 deleterious(0.03) benign(0.439) TCGA-EE-A29L-06 5 168199797 168199797 A G SLIT3 Missense_Mutation p.F483S 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A29L-06 5 168620526 168620526 G A SLIT3 Missense_Mutation p.L124F 0.54 tolerated(0.14) probably_damaging(0.98) TCGA-EE-A29L-06 5 170345744 170345744 G A RANBP17 Missense_Mutation p.E328K 0.24 deleterious(0) benign(0.001) TCGA-EE-A29L-06 5 170837608 170837608 T C NPM1 3'UTR 0.61 TCGA-EE-A29L-06 5 172517681 172517681 C T CREBRF Missense_Mutation p.P167S 0.40 tolerated_low_confidence(0.44) benign(0.01) TCGA-EE-A29L-06 5 175717561 175717561 C T SIMC1 Intron 0.29 TCGA-EE-A29L-06 5 175824609 175824609 G A CLTB Missense_Mutation p.R155W 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 5 175958571 175958571 G A RNF44 Missense_Mutation p.P120S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 5 176295932 176295932 C T UNC5A Missense_Mutation p.R230C 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29L-06 5 176941768 176941768 G A DDX41 Missense_Mutation p.P290L 0.37 deleterious(0.03) benign(0.19) TCGA-EE-A29L-06 5 179743354 179743354 G A GFPT2 Silent p.F420F 0.22 TCGA-EE-A29L-06 5 180432702 180432702 C T BTNL3 Silent p.L411L 0.33 TCGA-EE-A29L-06 5 23524458 23524458 C T PRDM9 Silent p.A322A 0.25 TCGA-EE-A29L-06 5 23524459 23524459 C T PRDM9 Missense_Mutation p.R323W 0.28 deleterious(0) benign(0.434) TCGA-EE-A29L-06 5 23527808 23527808 G A PRDM9 Missense_Mutation p.D871N 0.28 tolerated(0.51) benign(0.002) TCGA-EE-A29L-06 5 26915833 26915833 G A CDH9 Missense_Mutation p.S143L 0.68 deleterious(0) benign(0.307) TCGA-EE-A29L-06 5 31267538 31267538 G A CDH6 5'UTR 0.30 TCGA-EE-A29L-06 5 31322980 31322980 C T CDH6 Silent p.I646I 0.32 TCGA-EE-A29L-06 5 34814715 34814716 AT - RAI14 Frame_Shift_Del p.I297Nfs*15 0.11 TCGA-EE-A29L-06 5 35641617 35641617 C T SPEF2 Silent p.A82A 0.27 TCGA-EE-A29L-06 5 35740050 35740050 G A SPEF2 Nonsense_Mutation p.W1031* 0.33 TCGA-EE-A29L-06 5 35779244 35779244 C T SPEF2 Missense_Mutation p.R1415C 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29L-06 5 35957327 35957327 C T UGT3A1 Silent p.V346V 0.30 TCGA-EE-A29L-06 5 36039597 36039597 G A UGT3A2 Missense_Mutation p.P353S 0.25 tolerated(0.09) possibly_damaging(0.856) TCGA-EE-A29L-06 5 36039788 36039788 T C UGT3A2 Missense_Mutation p.K289R 0.24 tolerated(0.22) benign(0.068) TCGA-EE-A29L-06 5 38886271 38886271 C T OSMR Missense_Mutation p.L324F 0.26 tolerated(0.28) possibly_damaging(0.467) TCGA-EE-A29L-06 5 41004490 41004490 G A MROH2B Silent p.Y1384Y 0.58 TCGA-EE-A29L-06 5 41018473 41018473 G A MROH2B Silent p.I911I 0.15 TCGA-EE-A29L-06 5 41033178 41033178 A T MROH2B Missense_Mutation p.F776I 0.67 deleterious(0) benign(0.254) TCGA-EE-A29L-06 5 41055862 41055862 A G MROH2B Silent p.L339L 0.26 TCGA-EE-A29L-06 5 41153961 41153961 C T C6 Silent p.Q747Q 0.25 TCGA-EE-A29L-06 5 41201788 41201788 C T C6 Missense_Mutation p.E58K 0.15 tolerated(1) benign(0.003) TCGA-EE-A29L-06 5 41909989 41909989 C T C5orf51 Missense_Mutation p.P117S 0.17 tolerated(0.15) benign(0.027) TCGA-EE-A29L-06 5 43651924 43651924 C T NNT Missense_Mutation p.P601S 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 5 45303919 45303919 C T HCN1 Missense_Mutation p.R467Q 0.20 deleterious(0) probably_damaging(0.962) TCGA-EE-A29L-06 5 484715 484715 G A SLC9A3 Silent p.I284I 0.19 TCGA-EE-A29L-06 5 50056193 50056193 G A PARP8 Silent p.G114G 0.35 TCGA-EE-A29L-06 5 50091143 50091143 C T PARP8 Silent p.S440S 0.60 TCGA-EE-A29L-06 5 52161619 52161619 G A ITGA1 Missense_Mutation p.E198K 0.62 tolerated(0.43) benign(0.001) TCGA-EE-A29L-06 5 52189578 52189578 G A ITGA1 Missense_Mutation p.E333K 0.20 tolerated(0.81) benign(0.01) TCGA-EE-A29L-06 5 52240865 52240865 G A ITGA1 Silent p.E1126E 0.29 TCGA-EE-A29L-06 5 55195914 55195914 G A IL31RA Silent p.G341G 0.29 TCGA-EE-A29L-06 5 63890555 63890555 G A RGS7BP Missense_Mutation p.G161E 0.27 tolerated_low_confidence(1) unknown(0) TCGA-EE-A29L-06 5 66124697 66124697 G A MAST4 Intron 0.58 TCGA-EE-A29L-06 5 6625745 6625745 G C NSUN2 Missense_Mutation p.R133G 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 5 6633926 6633926 C T SRD5A1 Silent p.L79L 0.15 TCGA-EE-A29L-06 5 6633927 6633927 C T SRD5A1 Missense_Mutation p.R80C 0.16 tolerated(0.07) possibly_damaging(0.608) TCGA-EE-A29L-06 5 71627109 71627109 C T PTCD2 Silent p.F125F 0.31 TCGA-EE-A29L-06 5 75914462 75914462 C T F2RL2 Missense_Mutation p.E24K 0.59 tolerated(0.22) benign(0.001) TCGA-EE-A29L-06 5 76736641 76736641 T C WDR41 Silent p.E293E 0.60 TCGA-EE-A29L-06 5 76932724 76932724 G A OTP Silent p.F123F 0.30 TCGA-EE-A29L-06 5 77385277 77385277 A C AP3B1 Silent p.S839S 0.31 TCGA-EE-A29L-06 5 7897231 7897231 C T MTRR Missense_Mutation p.S635F 0.60 deleterious(0.03) probably_damaging(0.912) TCGA-EE-A29L-06 5 82834193 82834193 C T VCAN Missense_Mutation p.P1791S 0.30 deleterious(0.04) benign(0.003) TCGA-EE-A29L-06 5 900650 900650 G A TRIP13 Missense_Mutation p.E144K 0.61 tolerated(0.4) benign(0.01) TCGA-EE-A29L-06 5 95119555 95119555 C T RHOBTB3 Missense_Mutation p.S504F 0.33 tolerated(0.7) benign(0.184) TCGA-EE-A29L-06 5 95728839 95728839 G A PCSK1 Missense_Mutation p.P710S 0.30 tolerated_low_confidence(0.36) benign(0.039) TCGA-EE-A29L-06 5 9629808 9629808 G A TAS2R1 Missense_Mutation p.P113S 0.79 tolerated(0.05) probably_damaging(0.913) TCGA-EE-A29L-06 6 100056687 100056687 G A PRDM13 Missense_Mutation p.R72Q 0.39 deleterious(0.05) possibly_damaging(0.659) TCGA-EE-A29L-06 6 105526471 105526471 C T LIN28B Missense_Mutation p.S189L 0.41 deleterious_low_confidence(0.02) benign(0.011) TCGA-EE-A29L-06 6 105736770 105736770 C T PREP Splice_Site p.X440_splice 0.47 TCGA-EE-A29L-06 6 105771585 105771585 C T PREP Silent p.E424E 0.49 TCGA-EE-A29L-06 6 107390646 107390646 G A BEND3 Silent p.P583P 0.43 TCGA-EE-A29L-06 6 107391958 107391958 G A BEND3 Missense_Mutation p.S146L 0.40 tolerated_low_confidence(0.05) benign(0.003) TCGA-EE-A29L-06 6 10894142 10894142 C T SYCP2L Nonsense_Mutation p.Q41* 0.79 TCGA-EE-A29L-06 6 108984964 108984964 C T FOXO3 Missense_Mutation p.R310C 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A29L-06 6 110759941 110759941 G A SLC22A16 Silent p.V431V 0.49 TCGA-EE-A29L-06 6 114378693 114378693 G A HS3ST5 Missense_Mutation p.R257C 0.43 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29L-06 6 116757438 116757438 C T DSE Missense_Mutation p.H603Y 0.53 tolerated(0.09) benign(0.016) TCGA-EE-A29L-06 6 116757959 116757959 C T DSE Silent p.R776R 0.15 TCGA-EE-A29L-06 6 117718260 117718260 C T ROS1 Silent p.L199L 0.38 TCGA-EE-A29L-06 6 117725504 117725504 C T ROS1 Missense_Mutation p.G126E 0.52 tolerated(0.25) benign(0.058) TCGA-EE-A29L-06 6 119345183 119345183 G A FAM184A Missense_Mutation p.L319F 0.42 tolerated(0.31) possibly_damaging(0.891) TCGA-EE-A29L-06 6 12122173 12122173 C T HIVEP1 Silent p.T715T 0.20 TCGA-EE-A29L-06 6 121768817 121768817 C T GJA1 Missense_Mutation p.T275I 0.27 tolerated(0.24) benign(0.042) TCGA-EE-A29L-06 6 127796668 127796668 C T SOGA3 Missense_Mutation p.D835N 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 127837547 127837547 C T SOGA3 Silent p.R71R 0.57 TCGA-EE-A29L-06 6 128134490 128134490 T A THEMIS Silent p.G432G 0.44 TCGA-EE-A29L-06 6 128134491 128134491 C T THEMIS Missense_Mutation p.G432E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 128134744 128134744 C T THEMIS Missense_Mutation p.E348K 0.43 tolerated(0.07) possibly_damaging(0.481) TCGA-EE-A29L-06 6 128298072 128298072 G A PTPRK Missense_Mutation p.S1286F 0.35 deleterious(0) benign(0.328) TCGA-EE-A29L-06 6 130381225 130381225 G A L3MBTL3 Missense_Mutation p.M268I 0.59 deleterious(0) possibly_damaging(0.533) TCGA-EE-A29L-06 6 131997883 131997883 C T ENPP3 Missense_Mutation p.P294S 0.29 tolerated(0.09) benign(0.034) TCGA-EE-A29L-06 6 132966171 132966171 G A TAAR1 Silent p.F324F 0.38 TCGA-EE-A29L-06 6 132966382 132966382 C T TAAR1 Missense_Mutation p.G254E 0.48 deleterious(0) probably_damaging(0.962) TCGA-EE-A29L-06 6 134210763 134210763 G A TCF21 Silent p.G76G 0.37 TCGA-EE-A29L-06 6 136508200 136508200 G A PDE7B Missense_Mutation p.E358K 0.36 tolerated(0.25) benign(0.077) TCGA-EE-A29L-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-EE-A29L-06 6 136698940 136698940 G A MAP7 Missense_Mutation p.S257L 0.34 deleterious(0) probably_damaging(0.963) TCGA-EE-A29L-06 6 138619790 138619790 C T KIAA1244 Silent p.F1232F 0.32 TCGA-EE-A29L-06 6 144269298 144269298 T A PLAGL1 5'UTR 0.46 TCGA-EE-A29L-06 6 146350696 146350696 G A GRM1 Missense_Mutation p.E15K 0.38 tolerated_low_confidence(0.09) benign(0.058) TCGA-EE-A29L-06 6 150004522 150004522 G A LATS1 Missense_Mutation p.P568L 0.44 tolerated(0.18) benign(0.024) TCGA-EE-A29L-06 6 150713566 150713566 C T IYD Silent p.I152I 0.45 TCGA-EE-A29L-06 6 151152882 151152882 G A PLEKHG1 Missense_Mutation p.E879K 0.39 tolerated(0.17) benign(0.006) TCGA-EE-A29L-06 6 151869468 151869468 C T CCDC170 Silent p.F206F 0.26 TCGA-EE-A29L-06 6 152382133 152382133 G A ESR1 Missense_Mutation p.G415R 0.64 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 6 152553250 152553250 C T SYNE1 Splice_Site p.X6954_splice 0.24 TCGA-EE-A29L-06 6 152655162 152655162 C T SYNE1 Missense_Mutation p.E4259K 0.41 benign(0.37) TCGA-EE-A29L-06 6 154567812 154567812 C T IPCEF1 Silent p.K53K 0.44 TCGA-EE-A29L-06 6 157405823 157405823 C T ARID1B Missense_Mutation p.P689S 0.42 probably_damaging(0.999) TCGA-EE-A29L-06 6 157488186 157488186 C A ARID1B Missense_Mutation p.F964L 0.43 probably_damaging(0.992) TCGA-EE-A29L-06 6 158517304 158517304 C T SYNJ2 Missense_Mutation p.H1467Y 0.50 tolerated_low_confidence(0.84) benign(0.11) TCGA-EE-A29L-06 6 159459245 159459245 C T TAGAP Missense_Mutation p.E267K 0.47 deleterious(0) possibly_damaging(0.78) TCGA-EE-A29L-06 6 159660606 159660606 G A FNDC1 Missense_Mutation p.R1413Q 0.43 deleterious(0) unknown(0) TCGA-EE-A29L-06 6 159687154 159687154 G A FNDC1 Missense_Mutation p.D1775N 0.36 tolerated(0.36) benign(0.235) TCGA-EE-A29L-06 6 160471585 160471585 C T IGF2R Silent p.L865L 0.52 TCGA-EE-A29L-06 6 160471586 160471586 C T IGF2R Missense_Mutation p.L866F 0.53 tolerated(0.08) possibly_damaging(0.9) TCGA-EE-A29L-06 6 160494835 160494835 C T IGF2R Missense_Mutation p.P1665L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 16327105 16327105 G A ATXN1 Silent p.P479P 0.24 TCGA-EE-A29L-06 6 16328476 16328476 G A ATXN1 Silent p.T22T 0.21 TCGA-EE-A29L-06 6 167550831 167550831 C T CCR6 Silent p.S371S 0.43 TCGA-EE-A29L-06 6 167754223 167754223 C T TTLL2 Missense_Mutation p.R279W 0.42 deleterious(0.04) benign(0.373) TCGA-EE-A29L-06 6 168352394 168352394 C T MLLT4 Nonsense_Mutation p.Q1447* 0.49 TCGA-EE-A29L-06 6 168445589 168445589 C T KIF25 Silent p.F356F 0.40 TCGA-EE-A29L-06 6 17426906 17426906 G A CAP2 Silent p.G69G 0.22 TCGA-EE-A29L-06 6 18256622 18256622 T A DEK Missense_Mutation p.Q141L 0.19 deleterious(0.04) benign(0.001) TCGA-EE-A29L-06 6 21596018 21596018 C T SOX4 Missense_Mutation p.S418F 0.25 deleterious(0) unknown(0) TCGA-EE-A29L-06 6 22294638 22294638 G A PRL Silent p.F68F 0.23 TCGA-EE-A29L-06 6 24522992 24522992 C T ALDH5A1 Intron 0.25 TCGA-EE-A29L-06 6 25492246 25492246 C T LRRC16A Missense_Mutation p.S405F 0.17 deleterious(0) probably_damaging(0.944) TCGA-EE-A29L-06 6 25689431 25689431 C T SCGN Nonsense_Mutation p.Q187* 0.19 TCGA-EE-A29L-06 6 25727414 25727414 C T HIST1H2BA Missense_Mutation p.S93F 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A29L-06 6 25776929 25776929 C T SLC17A4 Missense_Mutation p.T365I 0.33 deleterious(0.03) benign(0.093) TCGA-EE-A29L-06 6 25776930 25776930 C T SLC17A4 Silent p.T365T 0.34 TCGA-EE-A29L-06 6 25916919 25916919 G A SLC17A2 Silent p.I308I 0.23 TCGA-EE-A29L-06 6 26444391 26444391 T G BTN3A3 Missense_Mutation p.S98A 0.16 tolerated(0.08) possibly_damaging(0.454) TCGA-EE-A29L-06 6 26444392 26444392 C T BTN3A3 Missense_Mutation p.S98L 0.17 tolerated(0.07) possibly_damaging(0.757) TCGA-EE-A29L-06 6 2683260 2683260 G A MYLK4 Silent p.L228L 0.22 TCGA-EE-A29L-06 6 27369044 27369044 C T ZNF391 Missense_Mutation p.H299Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A29L-06 6 27776201 27776201 C T HIST1H2AI Missense_Mutation p.R72C 0.26 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A29L-06 6 28483479 28483479 G A GPX6 Silent p.F14F 0.29 TCGA-EE-A29L-06 6 28540556 28540556 C T SCAND3 Missense_Mutation p.R1037K 0.39 tolerated(0.05) benign(0.039) TCGA-EE-A29L-06 6 28540782 28540782 A G SCAND3 Missense_Mutation p.F962L 0.31 tolerated(0.17) probably_damaging(0.982) TCGA-EE-A29L-06 6 28542620 28542620 C T SCAND3 Missense_Mutation p.G621E 0.41 tolerated_low_confidence(0.32) benign(0.001) TCGA-EE-A29L-06 6 28542725 28542725 G A SCAND3 Missense_Mutation p.P586L 0.33 deleterious_low_confidence(0) benign(0.018) TCGA-EE-A29L-06 6 28543082 28543082 C T SCAND3 Missense_Mutation p.C467Y 0.18 tolerated_low_confidence(0.05) benign(0.002) TCGA-EE-A29L-06 6 29323035 29323035 G A OR5V1 Missense_Mutation p.S313F 0.54 tolerated_low_confidence(0.14) benign(0.001) TCGA-EE-A29L-06 6 29408455 29408455 C T OR10C1 Silent p.L221L 0.37 TCGA-EE-A29L-06 6 29429521 29429521 C T OR2H1 5'UTR 0.39 TCGA-EE-A29L-06 6 29572397 29572397 G A GABBR1 Silent p.T862T 0.62 TCGA-EE-A29L-06 6 29640907 29640907 G A ZFP57 Silent p.A327A 0.68 TCGA-EE-A29L-06 6 30673675 30673675 G A MDC1 Silent p.S1095S 0.32 TCGA-EE-A29L-06 6 30680194 30680194 G A MDC1 Missense_Mutation p.H509Y 0.31 tolerated(0.06) benign(0.001) TCGA-EE-A29L-06 6 30899178 30899178 G A SFTA2 3'UTR 0.69 TCGA-EE-A29L-06 6 31323340 31323340 G A HLA-B Missense_Mutation p.P217S 0.45 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-EE-A29L-06 6 31557900 31557900 G A NCR3 Missense_Mutation p.S16F 0.50 deleterious(0) probably_damaging(0.942) TCGA-EE-A29L-06 6 31594924 31594924 C T PRRC2A Silent p.P413P 0.35 TCGA-EE-A29L-06 6 31594925 31594925 C T PRRC2A Missense_Mutation p.P414S 0.37 unknown(0) TCGA-EE-A29L-06 6 32036660 32036660 C T TNXB Silent p.V1947V 0.45 TCGA-EE-A29L-06 6 32038147 32038147 C T TNXB Missense_Mutation p.E1679K 0.48 benign(0.425) TCGA-EE-A29L-06 6 32163318 32163318 G A NOTCH4 Missense_Mutation p.P1970S 0.46 tolerated_low_confidence(0.44) benign(0.006) TCGA-EE-A29L-06 6 32189026 32189026 G A NOTCH4 Silent p.P176P 0.47 TCGA-EE-A29L-06 6 32260952 32260952 C T C6orf10 Missense_Mutation p.D500N 0.52 tolerated(0.13) possibly_damaging(0.457) TCGA-EE-A29L-06 6 32629941 32629941 T G HLA-DQB1 Missense_Mutation p.Y155S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 33289089 33289089 G A DAXX Missense_Mutation p.P155S 0.41 tolerated(0.15) benign(0.241) TCGA-EE-A29L-06 6 33669180 33669180 G A UQCC2 Silent p.A52A 0.46 TCGA-EE-A29L-06 6 35392531 35392531 C T PPARD Silent p.F351F 0.61 TCGA-EE-A29L-06 6 36651888 36651888 C T CDKN1A Missense_Mutation p.P4S 0.28 tolerated_low_confidence(0.33) benign(0.004) TCGA-EE-A29L-06 6 38705606 38705606 G A DNAH8 Missense_Mutation p.G108E 0.37 benign(0.013) TCGA-EE-A29L-06 6 38759333 38759333 C T DNAH8 Silent p.I711I 0.46 TCGA-EE-A29L-06 6 38835890 38835890 G A DNAH8 Missense_Mutation p.G2032E 0.27 probably_damaging(1) TCGA-EE-A29L-06 6 39158950 39158950 C T KCNK5 Missense_Mutation p.D406N 0.27 tolerated(0.13) benign(0.037) TCGA-EE-A29L-06 6 40399472 40399472 C T LRFN2 Missense_Mutation p.D461N 0.70 deleterious(0) probably_damaging(0.989) TCGA-EE-A29L-06 6 40399839 40399839 G A LRFN2 Silent p.V338V 0.40 TCGA-EE-A29L-06 6 42156425 42156425 G A GUCA1B Silent p.L84L 0.43 TCGA-EE-A29L-06 6 42237097 42237097 C T TRERF1 Missense_Mutation p.D78N 0.51 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A29L-06 6 43325230 43325230 G A ZNF318 Silent p.P274P 0.54 TCGA-EE-A29L-06 6 44137222 44137222 G A CAPN11 Missense_Mutation p.G98D 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 6 44271982 44271982 G A AARS2 Missense_Mutation p.P648L 0.53 tolerated(0.15) probably_damaging(0.959) TCGA-EE-A29L-06 6 46657589 46657589 C T TDRD6 Missense_Mutation p.S575L 0.31 tolerated(0.09) benign(0.021) TCGA-EE-A29L-06 6 46849839 46849839 C T GPR116 Silent p.R206R 0.37 TCGA-EE-A29L-06 6 49704164 49704164 C T CRISP3 Silent p.V66V 0.42 TCGA-EE-A29L-06 6 49753833 49753833 C T PGK2 Missense_Mutation p.M356I 0.43 tolerated(0.13) benign(0.169) TCGA-EE-A29L-06 6 50696616 50696616 G A TFAP2D Missense_Mutation p.G216S 0.61 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 6 51503726 51503726 A C PKHD1 Silent p.G3809G 0.38 TCGA-EE-A29L-06 6 51889718 51889718 C A PKHD1 Silent p.G1630G 0.47 TCGA-EE-A29L-06 6 51923238 51923238 C T PKHD1 Silent p.R465R 0.48 TCGA-EE-A29L-06 6 51944766 51944766 C T PKHD1 Missense_Mutation p.E108K 0.33 deleterious(0.01) possibly_damaging(0.791) TCGA-EE-A29L-06 6 52054084 52054084 G A IL17A Silent p.V154V 0.50 TCGA-EE-A29L-06 6 54186144 54186144 C T TINAG Missense_Mutation p.R157C 0.42 tolerated(0.06) benign(0.01) TCGA-EE-A29L-06 6 54254608 54254608 G A TINAG Missense_Mutation p.G439E 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 55264058 55264058 C T GFRAL Missense_Mutation p.H345Y 0.50 deleterious(0) benign(0.195) TCGA-EE-A29L-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.47 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 6 56483105 56483105 G A DST Intron 0.44 TCGA-EE-A29L-06 6 62688069 62688069 C T KHDRBS2 Missense_Mutation p.D129N 0.38 tolerated(0.37) benign(0.011) TCGA-EE-A29L-06 6 69348981 69348981 C T BAI3 Silent p.F138F 0.30 TCGA-EE-A29L-06 6 70850851 70850851 G A COL19A1 Silent p.E484E 0.56 TCGA-EE-A29L-06 6 70890205 70890205 G A COL19A1 Missense_Mutation p.G890E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 6 72957726 72957726 T C RIMS1 Missense_Mutation p.S713P 0.42 deleterious(0) benign(0.078) TCGA-EE-A29L-06 6 74073307 74073307 C T KHDC3L Silent p.V126V 0.50 TCGA-EE-A29L-06 6 7580358 7580358 C T DSP Missense_Mutation p.S1312F 0.67 possibly_damaging(0.736) TCGA-EE-A29L-06 6 75828862 75828862 C T COL12A1 Nonsense_Mutation p.W2417* 0.35 TCGA-EE-A29L-06 6 7584062 7584062 G A DSP Silent p.R2189R 0.21 TCGA-EE-A29L-06 6 86181079 86181079 C T NT5E Silent p.I229I 0.31 TCGA-EE-A29L-06 6 87967944 87967944 G A ZNF292 Missense_Mutation p.V1533I 0.69 tolerated_low_confidence(0.29) benign(0.027) TCGA-EE-A29L-06 6 89793953 89793953 C T PNRC1 3'UTR 0.44 TCGA-EE-A29L-06 6 90660443 90660443 G A BACH2 Missense_Mutation p.P461L 0.55 tolerated(0.24) benign(0.036) TCGA-EE-A29L-06 6 93967895 93967895 C T EPHA7 Missense_Mutation p.D678N 0.31 deleterious(0) benign(0.056) TCGA-EE-A29L-06 6 94120784 94120784 C T EPHA7 Nonsense_Mutation p.W89* 0.40 TCGA-EE-A29L-06 6 97053872 97053872 C T FHL5 Silent p.I143I 0.44 TCGA-EE-A29L-06 7 100468258 100468258 C T TRIP6 Missense_Mutation p.R298C 0.91 deleterious(0) probably_damaging(0.993) TCGA-EE-A29L-06 7 100678869 100678869 C A MUC17 Missense_Mutation p.P1391H 0.61 unknown(0) TCGA-EE-A29L-06 7 100771899 100771899 A C SERPINE1 Silent p.G75G 0.43 TCGA-EE-A29L-06 7 102495290 102495290 G T FBXL13 Silent p.S551S 0.79 TCGA-EE-A29L-06 7 106509277 106509277 C T PIK3CG Missense_Mutation p.P424L 0.94 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 7 113519909 113519909 C T PPP1R3A Missense_Mutation p.G413E 0.21 tolerated(1) benign(0.009) TCGA-EE-A29L-06 7 113558876 113558876 G A PPP1R3A Missense_Mutation p.S59L 0.58 deleterious(0) benign(0.434) TCGA-EE-A29L-06 7 114304412 114304412 C T FOXP2 Missense_Mutation p.H667Y 0.79 deleterious(0.03) benign(0.007) TCGA-EE-A29L-06 7 114329980 114329980 G A FOXP2 Silent p.%3D 0.21 TCGA-EE-A29L-06 7 116339428 116339428 C T MET Missense_Mutation p.P97L 0.20 tolerated(0.38) probably_damaging(1) TCGA-EE-A29L-06 7 11676263 11676263 G A THSD7A Silent p.I172I 0.37 TCGA-EE-A29L-06 7 116870013 116870013 C T ST7 Missense_Mutation p.P512S 0.74 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A29L-06 7 117060321 117060321 T A ASZ1 Missense_Mutation p.Q112H 0.18 tolerated(0.1) benign(0.001) TCGA-EE-A29L-06 7 117067533 117067533 C T ASZ1 5'UTR 0.45 TCGA-EE-A29L-06 7 117175322 117175322 C T CFTR Silent p.F200F 0.21 TCGA-EE-A29L-06 7 117282597 117282597 G A CFTR Missense_Mutation p.D1275N 0.51 tolerated(1) benign(0.002) TCGA-EE-A29L-06 7 120387732 120387732 C T KCND2 Intron 0.35 TCGA-EE-A29L-06 7 121652699 121652699 C T PTPRZ1 Missense_Mutation p.P1200L 0.55 deleterious_low_confidence(0) benign(0.424) TCGA-EE-A29L-06 7 122114448 122114448 G A CADPS2 Missense_Mutation p.S662F 0.21 deleterious(0.01) possibly_damaging(0.474) TCGA-EE-A29L-06 7 123257713 123257713 G A ASB15 Missense_Mutation p.E125K 0.24 tolerated(0.08) benign(0.257) TCGA-EE-A29L-06 7 123595075 123595075 G A SPAM1 Missense_Mutation p.E327K 0.54 deleterious(0.01) probably_damaging(1) TCGA-EE-A29L-06 7 128407644 128407644 C T CALU Missense_Mutation p.P268S 0.75 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29L-06 7 128494728 128494728 G A FLNC Missense_Mutation p.G2330D 0.26 deleterious(0.04) probably_damaging(0.963) TCGA-EE-A29L-06 7 131831286 131831286 G A PLXNA4 Nonsense_Mutation p.R1680* 0.26 TCGA-EE-A29L-06 7 134896311 134896311 G A WDR91 5'Flank 0.21 TCGA-EE-A29L-06 7 137531208 137531208 C T DGKI Missense_Mutation p.R134K 0.13 tolerated(0.13) benign(0.056) TCGA-EE-A29L-06 7 139720020 139720020 G A TBXAS1 3'UTR 0.46 TCGA-EE-A29L-06 7 141618715 141618715 C T OR9A4 Missense_Mutation p.L14F 0.39 deleterious(0.01) possibly_damaging(0.714) TCGA-EE-A29L-06 7 141672962 141672962 C T TAS2R38 Missense_Mutation p.M176I 0.15 tolerated(0.47) benign(0.002) TCGA-EE-A29L-06 7 141759342 141759342 G A MGAM Missense_Mutation p.G1297E 0.60 tolerated(0.1) benign(0.186) TCGA-EE-A29L-06 7 141765395 141765395 G A MGAM Intron 0.22 TCGA-EE-A29L-06 7 141799458 141799458 C T MGAM Missense_Mutation p.P1703S 0.31 deleterious(0.03) benign(0.046) TCGA-EE-A29L-06 7 141957561 141957561 C T PRSS58 5'UTR 0.19 TCGA-EE-A29L-06 7 142124529 142124529 G A TRBV6-8 Missense_Mutation p.L13F 0.23 tolerated(0.22) benign(0.257) TCGA-EE-A29L-06 7 142139395 142139395 G A TRBV7-6 Missense_Mutation p.S77L 0.63 deleterious(0.02) benign(0.333) TCGA-EE-A29L-06 7 142180782 142180782 G A TRBV6-5 Missense_Mutation p.T26I 0.15 deleterious(0.04) benign(0.049) TCGA-EE-A29L-06 7 142250702 142250702 G A TRBV6-4 3'Flank 0.20 TCGA-EE-A29L-06 7 142459713 142459713 C T PRSS1 Missense_Mutation p.P97S 0.66 tolerated(0.06) benign(0.329) TCGA-EE-A29L-06 7 142460770 142460770 T G PRSS1 Missense_Mutation p.S215A 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 7 142460771 142460771 C T PRSS1 Missense_Mutation p.S215F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 7 142570143 142570143 C T TRPV6 Missense_Mutation p.G626E 0.44 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A29L-06 7 142575033 142575033 C T TRPV6 Splice_Site p.X117_splice 0.19 TCGA-EE-A29L-06 7 142650939 142650939 C T KEL Silent p.L343L 0.20 TCGA-EE-A29L-06 7 142983219 142983219 C T TMEM139 Missense_Mutation p.R57W 0.18 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A29L-06 7 143141207 143141207 G A TAS2R60 Missense_Mutation p.G221E 0.39 tolerated(0.95) possibly_damaging(0.493) TCGA-EE-A29L-06 7 143510097 143510097 G T RP11-61L23.2 RNA 0.13 TCGA-EE-A29L-06 7 143510098 143510098 G A RP11-61L23.2 RNA 0.22 TCGA-EE-A29L-06 7 143657257 143657257 A C OR2F1 Missense_Mutation p.N65T 0.18 deleterious(0.01) benign(0.334) TCGA-EE-A29L-06 7 143701136 143701136 G A OR6B1 Missense_Mutation p.G16E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 7 143771558 143771558 G A OR2A25 Silent p.V82V 0.22 TCGA-EE-A29L-06 7 146818223 146818223 G A CNTNAP2 Missense_Mutation p.G303R 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A29L-06 7 147336230 147336230 T G CNTNAP2 Missense_Mutation p.L644V 0.21 tolerated(0.56) benign(0.016) TCGA-EE-A29L-06 7 148801022 148801022 G A ZNF425 Silent p.F647F 0.22 TCGA-EE-A29L-06 7 14880849 14880849 C T DGKB Missense_Mutation p.E14K 0.69 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29L-06 7 149422475 149422475 C T KRBA1 Missense_Mutation p.S399L 0.50 tolerated(0.08) benign(0.082) TCGA-EE-A29L-06 7 150217444 150217444 G A GIMAP7 Missense_Mutation p.V128I 0.22 tolerated(1) benign(0.035) TCGA-EE-A29L-06 7 150325121 150325121 C T GIMAP6 Missense_Mutation p.D189N 0.15 tolerated(0.07) probably_damaging(0.928) TCGA-EE-A29L-06 7 150325271 150325271 C T GIMAP6 Missense_Mutation p.D139N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 7 150389992 150389992 G A GIMAP2 Silent p.L206L 0.17 TCGA-EE-A29L-06 7 150390432 150390432 G A GIMAP2 3'UTR 0.50 TCGA-EE-A29L-06 7 150439873 150439873 G A GIMAP5 Missense_Mutation p.G216S 0.24 tolerated(0.09) possibly_damaging(0.805) TCGA-EE-A29L-06 7 150491073 150491073 G A TMEM176B Silent p.G97G 0.17 TCGA-EE-A29L-06 7 150493629 150493629 C T TMEM176B Missense_Mutation p.G10E 0.57 deleterious(0) benign(0.243) TCGA-EE-A29L-06 7 150558147 150558147 C T AOC1 Silent p.F702F 0.34 TCGA-EE-A29L-06 7 150749682 150749682 C T ASIC3 Missense_Mutation p.P520L 0.30 tolerated_low_confidence(0.2) benign(0) TCGA-EE-A29L-06 7 150883911 150883911 G A ASB10 Missense_Mutation p.R103C 0.30 deleterious(0.02) benign(0.056) TCGA-EE-A29L-06 7 151884350 151884350 G A KMT2C Missense_Mutation p.P1669S 0.15 probably_damaging(0.999) TCGA-EE-A29L-06 7 154738110 154738110 C T PAXIP1 Silent p.L1053L 0.17 TCGA-EE-A29L-06 7 156469366 156469366 A G RNF32 3'UTR 0.73 TCGA-EE-A29L-06 7 157959969 157959969 G A PTPRN2 Silent p.F188F 0.24 TCGA-EE-A29L-06 7 18067241 18067241 G A PRPS1L1 Silent p.I55I 0.39 TCGA-EE-A29L-06 7 20420314 20420314 C T ITGB8 Missense_Mutation p.P221S 0.18 tolerated(0.06) probably_damaging(0.977) TCGA-EE-A29L-06 7 20795182 20795182 C T ABCB5 Missense_Mutation p.H1237Y 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 7 21856193 21856193 G A DNAH11 Missense_Mutation p.E3488K 0.75 possibly_damaging(0.908) TCGA-EE-A29L-06 7 21920455 21920455 G A DNAH11 Missense_Mutation p.G4118R 0.19 benign(0.403) TCGA-EE-A29L-06 7 24745866 24745866 G A DFNA5 Missense_Mutation p.P374S 0.35 tolerated(0.34) benign(0.029) TCGA-EE-A29L-06 7 24749959 24749959 C T DFNA5 Missense_Mutation p.R249K 0.22 tolerated(0.92) benign(0.006) TCGA-EE-A29L-06 7 26883685 26883685 C T SKAP2 Missense_Mutation p.E91K 0.14 tolerated(0.15) possibly_damaging(0.493) TCGA-EE-A29L-06 7 27148121 27148121 C T HOXA3 Missense_Mutation p.D249N 0.17 deleterious(0) possibly_damaging(0.727) TCGA-EE-A29L-06 7 2740289 2740289 G A AMZ1 Silent p.L68L 0.31 TCGA-EE-A29L-06 7 30911861 30911861 C T FAM188B Silent p.I583I 0.12 TCGA-EE-A29L-06 7 31102932 31102932 G A ADCYAP1R1 Splice_Site p.X17_splice 0.11 TCGA-EE-A29L-06 7 31692375 31692375 G A CCDC129 Intron 0.66 TCGA-EE-A29L-06 7 31918629 31918629 C T PDE1C Silent p.Q195Q 0.12 TCGA-EE-A29L-06 7 34851472 34851472 G A NPSR1 Missense_Mutation p.G159R 0.19 tolerated(0.2) benign(0.178) TCGA-EE-A29L-06 7 37354483 37354483 C T ELMO1 Missense_Mutation p.D55N 0.41 deleterious(0) probably_damaging(0.981) TCGA-EE-A29L-06 7 37916489 37916489 G A NME8 Missense_Mutation p.D292N 0.14 tolerated(0.99) benign(0.001) TCGA-EE-A29L-06 7 38305208 38305208 G A TRGC1 Nonsense_Mutation p.Q25* 0.22 TCGA-EE-A29L-06 7 38431535 38431535 C T AMPH Silent p.E564E 0.16 TCGA-EE-A29L-06 7 39504103 39504103 C T POU6F2 Missense_Mutation p.P632S 0.19 deleterious(0) unknown(0) TCGA-EE-A29L-06 7 42004030 42004030 G A GLI3 Silent p.F1547F 0.12 TCGA-EE-A29L-06 7 42005516 42005516 G A GLI3 Missense_Mutation p.P1052L 0.36 tolerated(0.1) benign(0.003) TCGA-EE-A29L-06 7 43484569 43484569 C T HECW1 Missense_Mutation p.L600F 0.15 tolerated_low_confidence(0.24) benign(0.002) TCGA-EE-A29L-06 7 43906562 43906562 G A MRPS24 Silent p.D80D 0.80 TCGA-EE-A29L-06 7 44561837 44561837 G A NPC1L1 Missense_Mutation p.S881L 0.89 deleterious(0) probably_damaging(0.953) TCGA-EE-A29L-06 7 44838999 44838999 C T PPIA Missense_Mutation p.R37C 0.18 tolerated_low_confidence(0.14) benign(0.01) TCGA-EE-A29L-06 7 48046893 48046893 G A SUN3 Missense_Mutation p.R121C 0.11 deleterious(0) probably_damaging(0.939) TCGA-EE-A29L-06 7 48288868 48288868 C T ABCA13 Missense_Mutation p.A642V 0.11 benign(0.002) TCGA-EE-A29L-06 7 48313192 48313192 C T ABCA13 Missense_Mutation p.S1310L 0.17 benign(0.025) TCGA-EE-A29L-06 7 48314904 48314904 G A ABCA13 Missense_Mutation p.E1881K 0.10 benign(0.141) TCGA-EE-A29L-06 7 50607688 50607688 G A DDC Silent p.F80F 0.21 TCGA-EE-A29L-06 7 51095722 51095722 G A COBL Missense_Mutation p.P1024L 0.34 tolerated(0.31) benign(0.006) TCGA-EE-A29L-06 7 51096981 51096981 G A COBL Silent p.S604S 0.17 TCGA-EE-A29L-06 7 53103888 53103888 G A POM121L12 Missense_Mutation p.R175Q 0.17 deleterious(0.02) benign(0.006) TCGA-EE-A29L-06 7 54612448 54612448 C T VSTM2A Silent p.D71D 0.27 TCGA-EE-A29L-06 7 54617573 54617573 C T VSTM2A Missense_Mutation p.S115F 0.72 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 7 55560099 55560099 C T VOPP1 Missense_Mutation p.M68I 0.17 tolerated(0.14) probably_damaging(0.946) TCGA-EE-A29L-06 7 56126106 56126106 C T CCT6A Silent p.L259L 0.16 TCGA-EE-A29L-06 7 5983093 5983093 G A RSPH10B Silent p.F540F 0.09 TCGA-EE-A29L-06 7 5998705 5998705 G A RSPH10B Missense_Mutation p.S193F 0.26 deleterious(0) possibly_damaging(0.908) TCGA-EE-A29L-06 7 6017358 6017358 G A PMS2 Missense_Mutation p.S769F 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 7 64864337 64864337 C T ZNF92 Missense_Mutation p.S437F 0.43 tolerated(0.28) benign(0.002) TCGA-EE-A29L-06 7 6731743 6731743 G A ZNF12 Missense_Mutation p.S277F 0.77 deleterious(0) probably_damaging(0.993) TCGA-EE-A29L-06 7 71177219 71177219 G A WBSCR17 3'UTR 0.76 TCGA-EE-A29L-06 7 72658761 72658761 G A GTF2IRD2P1 RNA 0.40 TCGA-EE-A29L-06 7 73010233 73010233 C T MLXIPL Missense_Mutation p.G709S 1.00 tolerated(0.14) benign(0.001) TCGA-EE-A29L-06 7 73483003 73483003 G A ELN Silent p.G716G 0.20 TCGA-EE-A29L-06 7 7645580 7645580 C T MIOS Silent p.T803T 0.76 TCGA-EE-A29L-06 7 813754 813754 G A HEATR2 Silent p.G667G 0.40 TCGA-EE-A29L-06 7 825182 825182 C T HEATR2 Silent p.F820F 0.38 TCGA-EE-A29L-06 7 82545344 82545344 A - PCLO Frame_Shift_Del p.M3987* 0.26 TCGA-EE-A29L-06 7 87032569 87032569 C T ABCB4 Missense_Mutation p.G1179E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 7 8790635 8790635 C T NXPH1 Intron 0.14 TCGA-EE-A29L-06 7 87910343 87910343 C T STEAP4 Missense_Mutation p.D346N 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 7 92763134 92763134 C T SAMD9L Silent p.K717K 0.57 TCGA-EE-A29L-06 7 93540048 93540048 C T GNGT1 Intron 0.50 TCGA-EE-A29L-06 7 94055744 94055744 G A COL1A2 Missense_Mutation p.G1003S 0.94 unknown(0) TCGA-EE-A29L-06 7 94058723 94058723 T C COL1A2 Missense_Mutation p.V1312A 0.95 unknown(0) TCGA-EE-A29L-06 7 94879550 94879550 C T PPP1R9A Silent p.I793I 0.72 TCGA-EE-A29L-06 7 99274133 99274133 C T CYP3A5 Intron 0.89 TCGA-EE-A29L-06 8 100887729 100887729 C A VPS13B Silent p.A3968A 0.62 TCGA-EE-A29L-06 8 105260975 105260975 G A RIMS2 Missense_Mutation p.D1175N 0.20 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-EE-A29L-06 8 106813867 106813867 G A ZFPM2 Silent p.K519K 0.20 TCGA-EE-A29L-06 8 10756373 10756373 G A XKR6 Missense_Mutation p.H339Y 0.29 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A29L-06 8 107781815 107781815 C T ABRA Missense_Mutation p.E202K 0.74 tolerated(0.15) possibly_damaging(0.521) TCGA-EE-A29L-06 8 110412520 110412520 G A PKHD1L1 Missense_Mutation p.G410S 0.21 tolerated(0.55) possibly_damaging(0.857) TCGA-EE-A29L-06 8 110497314 110497314 C T PKHD1L1 Silent p.F3206F 0.27 TCGA-EE-A29L-06 8 110510883 110510883 G A PKHD1L1 Splice_Site p.X3571_splice 0.70 TCGA-EE-A29L-06 8 110592300 110592300 C T SYBU Intron 0.14 TCGA-EE-A29L-06 8 110592301 110592301 C T SYBU Intron 0.14 TCGA-EE-A29L-06 8 113403015 113403015 G A CSMD3 Missense_Mutation p.P1938S 0.71 deleterious(0.04) possibly_damaging(0.824) TCGA-EE-A29L-06 8 114185968 114185968 G A CSMD3 Missense_Mutation p.P231L 0.15 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A29L-06 8 114327001 114327001 C T CSMD3 Missense_Mutation p.G67E 0.73 deleterious(0.03) possibly_damaging(0.651) TCGA-EE-A29L-06 8 119391684 119391684 G A SAMD12 Missense_Mutation p.S193F 0.31 tolerated_low_confidence(0.89) benign(0.001) TCGA-EE-A29L-06 8 119938786 119938786 T G TNFRSF11B Missense_Mutation p.K255T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29L-06 8 120114604 120114604 G A COLEC10 Missense_Mutation p.G104S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 8 124219445 124219445 C T FAM83A Silent p.F274F 0.16 TCGA-EE-A29L-06 8 125072545 125072545 G A FER1L6 Intron 0.28 TCGA-EE-A29L-06 8 131859744 131859744 C T ADCY8 Missense_Mutation p.D810N 0.20 tolerated(0.29) benign(0.002) TCGA-EE-A29L-06 8 139164728 139164728 C T FAM135B Missense_Mutation p.E664K 0.19 tolerated(0.23) benign(0.014) TCGA-EE-A29L-06 8 139164862 139164862 C T FAM135B Missense_Mutation p.G619E 0.24 tolerated(0.65) benign(0.308) TCGA-EE-A29L-06 8 139618674 139618674 C T COL22A1 Missense_Mutation p.E1352K 0.17 unknown(0) TCGA-EE-A29L-06 8 139712353 139712353 A C COL22A1 Splice_Site p.X864_splice 0.23 TCGA-EE-A29L-06 8 141545600 141545600 G A AGO2 Silent p.F746F 0.26 TCGA-EE-A29L-06 8 142161922 142161922 G A DENND3 Missense_Mutation p.E274K 0.28 tolerated(0.1) benign(0.02) TCGA-EE-A29L-06 8 143381912 143381912 G A TSNARE1 Missense_Mutation p.P409S 0.30 tolerated(0.2) benign(0.147) TCGA-EE-A29L-06 8 143569868 143569868 G A BAI1 Missense_Mutation p.E818K 0.16 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A29L-06 8 143857012 143857012 G A LYNX1 Silent p.T51T 0.58 TCGA-EE-A29L-06 8 143994724 143994724 C T CYP11B2 Silent p.R366R 0.55 TCGA-EE-A29L-06 8 144126217 144126217 G A C8orf31 Missense_Mutation p.S113N 0.16 deleterious_low_confidence(0) benign(0.383) TCGA-EE-A29L-06 8 144801597 144801597 C T MAPK15 Silent p.S222S 0.29 TCGA-EE-A29L-06 8 144898675 144898675 G A PUF60 3'UTR 0.25 TCGA-EE-A29L-06 8 144940898 144940898 T C EPPK1 Missense_Mutation p.Q2175R 0.22 benign(0) TCGA-EE-A29L-06 8 145135045 145135045 A G EXOSC4 Missense_Mutation p.Y124C 0.13 deleterious(0) probably_damaging(0.927) TCGA-EE-A29L-06 8 17822259 17822259 G A PCM1 Missense_Mutation p.G946E 0.43 tolerated(0.88) benign(0.04) TCGA-EE-A29L-06 8 2056620 2056620 C T MYOM2 Silent p.P1014P 0.50 TCGA-EE-A29L-06 8 21958475 21958475 C T FAM160B2 Silent p.I536I 0.20 TCGA-EE-A29L-06 8 24201093 24201093 C T ADAM28 Silent p.V662V 0.39 TCGA-EE-A29L-06 8 24811061 24811061 C T CTD-2168K21.2 5'Flank 0.44 TCGA-EE-A29L-06 8 24813201 24813201 C T CTD-2168K21.2 5'Flank 0.44 TCGA-EE-A29L-06 8 28017872 28017872 C T ELP3 Missense_Mutation p.R462C 0.41 deleterious(0.02) possibly_damaging(0.607) TCGA-EE-A29L-06 8 3076893 3076893 C T CSMD1 Missense_Mutation p.G1519E 0.70 probably_damaging(0.913) TCGA-EE-A29L-06 8 3216769 3216769 G A CSMD1 Missense_Mutation p.S1070F 0.24 possibly_damaging(0.741) TCGA-EE-A29L-06 8 33247208 33247208 G A FUT10 Missense_Mutation p.P162L 0.53 deleterious(0.01) benign(0.072) TCGA-EE-A29L-06 8 38287320 38287320 G A FGFR1 Missense_Mutation p.R113C 0.31 tolerated(0.07) benign(0.123) TCGA-EE-A29L-06 8 38913098 38913098 C T ADAM9 Silent p.F466F 0.40 TCGA-EE-A29L-06 8 39626980 39626980 G A ADAM2 Silent p.F381F 0.50 TCGA-EE-A29L-06 8 42586888 42586888 C T CHRNB3 Silent p.P146P 0.50 TCGA-EE-A29L-06 8 42591761 42591761 G A CHRNB3 Silent p.%3D 0.42 TCGA-EE-A29L-06 8 43048908 43048908 C T HGSNAT Silent p.Y462Y 0.33 TCGA-EE-A29L-06 8 52384783 52384783 C T PXDNL Missense_Mutation p.G259E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 8 54163366 54163366 A G OPRK1 Missense_Mutation p.S78P 0.15 tolerated(0.11) possibly_damaging(0.88) TCGA-EE-A29L-06 8 54793609 54793610 - C RGS20 Intron 0.23 TCGA-EE-A29L-06 8 55540730 55540730 G A RP1 Missense_Mutation p.D1430N 0.30 tolerated(0.15) benign(0.037) TCGA-EE-A29L-06 8 59352256 59352256 C T UBXN2B Missense_Mutation p.H200Y 0.31 deleterious(0) possibly_damaging(0.745) TCGA-EE-A29L-06 8 59409675 59409675 G A CYP7A1 Silent p.T132T 0.32 TCGA-EE-A29L-06 8 61135273 61135273 G A CA8 Missense_Mutation p.P225S 0.61 deleterious(0) possibly_damaging(0.642) TCGA-EE-A29L-06 8 61735282 61735282 G A CHD7 Missense_Mutation p.E1060K 0.33 probably_damaging(0.996) TCGA-EE-A29L-06 8 62212699 62212699 C T CLVS1 Silent p.L105L 0.32 TCGA-EE-A29L-06 8 65493401 65493401 C T BHLHE22 Silent p.F18F 0.62 TCGA-EE-A29L-06 8 65517309 65517309 C T CYP7B1 Missense_Mutation p.R388Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 8 67062607 67062607 G A TRIM55 Missense_Mutation p.M297I 0.39 tolerated(0.11) benign(0.074) TCGA-EE-A29L-06 8 67364250 67364250 C T ADHFE1 Missense_Mutation p.P266L 0.26 deleterious(0) possibly_damaging(0.823) TCGA-EE-A29L-06 8 67793138 67793138 C T MCMDC2 Missense_Mutation p.P255L 0.23 deleterious(0.01) benign(0.079) TCGA-EE-A29L-06 8 6793604 6793604 G A DEFA4 Missense_Mutation p.R78C 0.44 tolerated(0.17) probably_damaging(0.98) TCGA-EE-A29L-06 8 70594480 70594480 C T SLCO5A1 Missense_Mutation p.G574E 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A29L-06 8 71646610 71646610 G A XKR9 Missense_Mutation p.G358E 0.33 deleterious(0.03) possibly_damaging(0.753) TCGA-EE-A29L-06 8 77616557 77616557 G A ZFHX4 Silent p.K78K 0.24 TCGA-EE-A29L-06 8 77618646 77618646 G A ZFHX4 Missense_Mutation p.E775K 0.33 possibly_damaging(0.486) TCGA-EE-A29L-06 8 77766066 77766066 G A ZFHX4 Silent p.R2303R 0.59 TCGA-EE-A29L-06 8 8234125 8234125 C T SGK223 Silent p.R598R 0.70 TCGA-EE-A29L-06 8 82670747 82670747 G A CHMP4C Missense_Mutation p.D224N 0.37 deleterious(0.02) benign(0.128) TCGA-EE-A29L-06 8 86351982 86351982 G A CA3 Missense_Mutation p.E26K 0.39 tolerated(0.14) benign(0.063) TCGA-EE-A29L-06 8 87163713 87163713 G A ATP6V0D2 Missense_Mutation p.E279K 0.25 deleterious(0.04) benign(0.089) TCGA-EE-A29L-06 8 87738832 87738832 G A CNGB3 Nonsense_Mutation p.Q89* 0.26 TCGA-EE-A29L-06 8 88886032 88886032 C T DCAF4L2 Silent p.R56R 0.35 TCGA-EE-A29L-06 8 95800237 95800237 G A DPY19L4 Missense_Mutation p.R655K 0.30 tolerated(0.26) benign(0.007) TCGA-EE-A29L-06 8 97299284 97299284 C T PTDSS1 Silent p.F117F 0.60 TCGA-EE-A29L-06 9 100090419 100090419 C T CCDC180 Silent p.I637I 0.30 TCGA-EE-A29L-06 9 100127970 100127970 C T CCDC180 Silent p.I1376I 0.19 TCGA-EE-A29L-06 9 101530400 101530400 G A ANKS6 Missense_Mutation p.P702L 0.48 tolerated(0.08) benign(0.003) TCGA-EE-A29L-06 9 101748019 101748019 C T COL15A1 Silent p.F91F 0.29 TCGA-EE-A29L-06 9 101824273 101824273 G A COL15A1 Missense_Mutation p.M1141I 0.52 tolerated(0.68) probably_damaging(0.932) TCGA-EE-A29L-06 9 104032222 104032222 C T LPPR1 Nonsense_Mutation p.Q42* 0.21 TCGA-EE-A29L-06 9 104125001 104125001 G A BAAT Silent p.F322F 0.21 TCGA-EE-A29L-06 9 104133253 104133253 C T BAAT Missense_Mutation p.G145D 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29L-06 9 104356958 104356958 G A PPP3R2 Silent p.F85F 0.39 TCGA-EE-A29L-06 9 105767545 105767545 G A CYLC2 Missense_Mutation p.G211E 0.40 tolerated(0.59) unknown(0) TCGA-EE-A29L-06 9 106876340 106876340 C T SMC2 Missense_Mutation p.P504S 0.31 deleterious(0.02) benign(0.086) TCGA-EE-A29L-06 9 107266990 107266990 G A OR13F1 Nonsense_Mutation p.W149* 0.47 TCGA-EE-A29L-06 9 107331637 107331637 C T OR13C8 Silent p.L63L 0.22 TCGA-EE-A29L-06 9 107564394 107564394 G A ABCA1 Missense_Mutation p.P1547S 0.48 tolerated(1) benign(0.001) TCGA-EE-A29L-06 9 108127850 108127850 C T SLC44A1 Missense_Mutation p.S447F 0.22 deleterious(0) probably_damaging(0.963) TCGA-EE-A29L-06 9 112151520 112151520 C T PTPN3 Missense_Mutation p.R749Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29L-06 9 112900290 112900290 C T PALM2-AKAP2 Silent p.S822S 0.15 TCGA-EE-A29L-06 9 113065961 113065961 C T TXNDC8 3'UTR 0.57 TCGA-EE-A29L-06 9 113169812 113169812 C T SVEP1 Missense_Mutation p.E2690K 0.23 probably_damaging(0.999) TCGA-EE-A29L-06 9 113231282 113231282 T G SVEP1 Missense_Mutation p.K1033T 0.17 probably_damaging(1) TCGA-EE-A29L-06 9 114090528 114090528 G A OR2K2 Silent p.F62F 0.19 TCGA-EE-A29L-06 9 114411979 114411979 C T DNAJC25 Silent p.L246L 0.22 TCGA-EE-A29L-06 9 114464453 114464453 C T C9orf84 Silent p.L943L 0.32 TCGA-EE-A29L-06 9 115760208 115760208 G A ZNF883 RNA 0.23 TCGA-EE-A29L-06 9 115946644 115946644 G A FKBP15 Silent p.S548S 0.36 TCGA-EE-A29L-06 9 116857321 116857321 G A KIF12 Silent p.T229T 0.15 TCGA-EE-A29L-06 9 116931714 116931714 C T COL27A1 Missense_Mutation p.P627S 0.20 unknown(0) TCGA-EE-A29L-06 9 118949875 118949875 C T PAPPA Silent p.L286L 0.16 TCGA-EE-A29L-06 9 118950233 118950233 C T PAPPA Missense_Mutation p.R406C 0.40 deleterious(0) possibly_damaging(0.689) TCGA-EE-A29L-06 9 119115011 119115011 G A PAPPA Missense_Mutation p.E1331K 0.28 deleterious(0) possibly_damaging(0.621) TCGA-EE-A29L-06 9 119187765 119187765 G A ASTN2 3'UTR 0.33 TCGA-EE-A29L-06 9 119858380 119858380 C T ASTN2 Missense_Mutation p.D356N 0.16 tolerated_low_confidence(0.53) unknown(0) TCGA-EE-A29L-06 9 121929824 121929824 C T BRINP1 Nonsense_Mutation p.W608* 0.26 TCGA-EE-A29L-06 9 121930399 121930399 C T BRINP1 Missense_Mutation p.G417S 0.33 tolerated(0.41) benign(0.159) TCGA-EE-A29L-06 9 123715012 123715012 G A C5 3'UTR 0.16 TCGA-EE-A29L-06 9 124074660 124074660 G A GSN Missense_Mutation p.R237K 0.23 tolerated(0.45) benign(0.003) TCGA-EE-A29L-06 9 125140279 125140279 C T PTGS1 Missense_Mutation p.P66S 0.17 tolerated(0.6) benign(0.001) TCGA-EE-A29L-06 9 125140280 125140280 C T PTGS1 Missense_Mutation p.P66L 0.16 tolerated(0.23) benign(0.026) TCGA-EE-A29L-06 9 125239944 125239944 G A OR1J1 Nonsense_Mutation p.Q88* 0.46 TCGA-EE-A29L-06 9 125582721 125582721 G A PDCL Silent p.I183I 0.35 TCGA-EE-A29L-06 9 125901857 125901857 G A STRBP Missense_Mutation p.S483L 0.45 tolerated(0.13) benign(0.249) TCGA-EE-A29L-06 9 126133697 126133697 G A CRB2 Nonsense_Mutation p.W759* 0.19 TCGA-EE-A29L-06 9 126214555 126214555 G A DENND1A Silent p.F433F 0.19 TCGA-EE-A29L-06 9 127563899 127563899 C T OLFML2A Silent p.T292T 0.65 TCGA-EE-A29L-06 9 127920583 127920583 G A PPP6C Missense_Mutation p.R143C 0.50 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A29L-06 9 129594916 129594916 T A ZBTB43 Missense_Mutation p.I43N 0.18 deleterious(0.04) benign(0.066) TCGA-EE-A29L-06 9 129594917 129594917 T A ZBTB43 Silent p.I43I 0.18 TCGA-EE-A29L-06 9 130207219 130207219 G A ZNF79 Missense_Mutation p.E414K 0.44 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 9 130453203 130453203 C T STXBP1 3'UTR 0.24 TCGA-EE-A29L-06 9 130982548 130982548 C T DNM1 Silent p.F259F 0.20 TCGA-EE-A29L-06 9 131002264 131002264 G A DNM1 Missense_Mutation p.D516N 0.23 tolerated(0.51) benign(0.029) TCGA-EE-A29L-06 9 132397675 132397675 C T NTMT1 Silent p.L202L 0.41 TCGA-EE-A29L-06 9 132402973 132402973 G A ASB6 Nonsense_Mutation p.R48* 0.46 TCGA-EE-A29L-06 9 133920952 133920952 C T LAMC3 Missense_Mutation p.A475V 0.45 tolerated(0.12) benign(0.049) TCGA-EE-A29L-06 9 133962954 133962954 C T LAMC3 Missense_Mutation p.S1441F 0.19 deleterious(0) benign(0.062) TCGA-EE-A29L-06 9 134398543 134398543 A C POMT1 3'UTR 0.20 TCGA-EE-A29L-06 9 135470247 135470247 G A DDX31 3'UTR 0.44 TCGA-EE-A29L-06 9 135933373 135933373 C T GTF3C5 3'UTR 0.20 TCGA-EE-A29L-06 9 135960323 135960323 G A CELP RNA 0.29 TCGA-EE-A29L-06 9 136320464 136320464 C T ADAMTS13 Nonsense_Mutation p.Q1103* 0.21 TCGA-EE-A29L-06 9 136444258 136444258 C T FAM163B Silent p.E129E 0.10 TCGA-EE-A29L-06 9 136599167 136599167 C T SARDH Silent p.Q43Q 0.17 TCGA-EE-A29L-06 9 137622301 137622301 G A COL5A1 Missense_Mutation p.D382N 0.14 benign(0.33) TCGA-EE-A29L-06 9 137623417 137623417 G A COL5A1 Missense_Mutation p.E414K 0.29 possibly_damaging(0.794) TCGA-EE-A29L-06 9 137653774 137653774 G A COL5A1 Missense_Mutation p.D647N 0.38 probably_damaging(0.971) TCGA-EE-A29L-06 9 138516270 138516270 G A GLT6D1 Silent p.F168F 0.48 TCGA-EE-A29L-06 9 138590849 138590849 C T SOHLH1 Silent p.R63R 0.42 TCGA-EE-A29L-06 9 139915991 139915991 G A ABCA2 Silent p.I250I 0.44 TCGA-EE-A29L-06 9 140003125 140003125 G A MAN1B1 3'UTR 0.50 TCGA-EE-A29L-06 9 140245817 140245817 G A EXD3 Missense_Mutation p.S446F 0.30 tolerated(0.71) benign(0.086) TCGA-EE-A29L-06 9 140400467 140400467 C T PNPLA7 Missense_Mutation p.D432N 0.42 tolerated(0.15) possibly_damaging(0.627) TCGA-EE-A29L-06 9 140728941 140728941 C T EHMT1 Silent p.F1227F 0.14 TCGA-EE-A29L-06 9 140943685 140943685 C T CACNA1B Missense_Mutation p.H1210Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 9 141010018 141010018 C T CACNA1B Silent p.S1888S 0.41 TCGA-EE-A29L-06 9 14776104 14776104 C T FREM1 Missense_Mutation p.G1514R 0.81 deleterious(0.02) benign(0.159) TCGA-EE-A29L-06 9 18574073 18574073 G A ADAMTSL1 Missense_Mutation p.A95T 0.84 deleterious(0) probably_damaging(0.998) TCGA-EE-A29L-06 9 19520939 19520939 C T SLC24A2 Missense_Mutation p.M563I 0.77 deleterious(0) probably_damaging(0.928) TCGA-EE-A29L-06 9 19786072 19786072 C T SLC24A2 Missense_Mutation p.E265K 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 9 2081880 2081880 G A SMARCA2 Missense_Mutation p.G745R 0.84 benign(0.091) TCGA-EE-A29L-06 9 21166166 21166166 C T IFNA21 Missense_Mutation p.R149K 0.84 tolerated(0.09) benign(0.216) TCGA-EE-A29L-06 9 21305016 21305016 G A IFNA5 Silent p.L80L 0.79 TCGA-EE-A29L-06 9 27172711 27172711 C T TEK Silent p.C242C 0.55 TCGA-EE-A29L-06 9 32631485 32631485 G A TAF1L Missense_Mutation p.P1365S 0.58 deleterious(0) possibly_damaging(0.78) TCGA-EE-A29L-06 9 32633142 32633142 C T TAF1L Silent p.G812G 0.59 TCGA-EE-A29L-06 9 34372144 34372144 G A KIAA1161 Silent p.P232P 0.35 TCGA-EE-A29L-06 9 35078706 35078706 G A FANCG Missense_Mutation p.P68L 0.12 deleterious(0.02) benign(0.016) TCGA-EE-A29L-06 9 35612968 35612968 C T CD72 Nonsense_Mutation p.W237* 0.68 TCGA-EE-A29L-06 9 35719223 35719223 A G TLN1 Missense_Mutation p.S582P 0.62 deleterious(0) possibly_damaging(0.886) TCGA-EE-A29L-06 9 35811392 35811392 G A SPAG8 Silent p.F217F 0.25 TCGA-EE-A29L-06 9 37729769 37729769 C T FRMPD1 Silent p.I219I 0.25 TCGA-EE-A29L-06 9 37745844 37745844 C T FRMPD1 Missense_Mutation p.S1272L 0.20 tolerated_low_confidence(0.06) benign(0.004) TCGA-EE-A29L-06 9 37919910 37919910 C T SHB Missense_Mutation p.E480K 0.61 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A29L-06 9 39144264 39144264 C T CNTNAP3 Missense_Mutation p.G577S 0.53 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A29L-06 9 43627414 43627414 C G SPATA31A6 Missense_Mutation p.E425Q 0.56 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 9 5164164 5164164 A T INSL6 Missense_Mutation p.F131I 0.83 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A29L-06 9 5924691 5924691 G A KIAA2026 Silent p.L885L 0.82 TCGA-EE-A29L-06 9 6256006 6256006 C T IL33 Silent p.F217F 0.85 TCGA-EE-A29L-06 9 71152294 71152294 C T TMEM252 Missense_Mutation p.E132K 0.35 deleterious(0.03) benign(0.21) TCGA-EE-A29L-06 9 71478832 71478832 G A PIP5K1B Missense_Mutation p.R50Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 9 71629013 71629013 G A PRKACG 5'UTR 0.78 TCGA-EE-A29L-06 9 72067079 72067079 C T APBA1 Missense_Mutation p.D643N 0.34 tolerated(0.05) probably_damaging(0.974) TCGA-EE-A29L-06 9 72659028 72659028 C T MAMDC2 5'UTR 0.62 TCGA-EE-A29L-06 9 77275628 77275628 G A RORB Missense_Mutation p.E245K 0.41 deleterious(0) probably_damaging(0.926) TCGA-EE-A29L-06 9 78601055 78601055 G A PCSK5 Nonsense_Mutation p.W102* 0.20 TCGA-EE-A29L-06 9 78638698 78638698 C T PCSK5 Silent p.I152I 0.35 TCGA-EE-A29L-06 9 78848417 78848417 G A PCSK5 Nonsense_Mutation p.W924* 0.23 TCGA-EE-A29L-06 9 78973651 78973651 G A PCSK5 Missense_Mutation p.S1799N 0.41 tolerated(0.31) benign(0.004) TCGA-EE-A29L-06 9 79321591 79321591 G A PRUNE2 Missense_Mutation p.P1867S 0.68 tolerated(0.21) probably_damaging(0.911) TCGA-EE-A29L-06 9 79853039 79853039 C T VPS13A Missense_Mutation p.P573S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 9 84532927 84532927 T A SPATA31D5P RNA 0.35 TCGA-EE-A29L-06 9 84606249 84606249 C T SPATA31D1 Silent p.P288P 0.21 TCGA-EE-A29L-06 9 85926816 85926816 G A FRMD3 Silent p.I253I 0.23 TCGA-EE-A29L-06 9 86504117 86504117 G A KIF27 Nonsense_Mutation p.R621* 0.53 TCGA-EE-A29L-06 9 86586822 86586822 G A HNRNPK Missense_Mutation p.P310S 0.20 tolerated(0.13) benign(0.062) TCGA-EE-A29L-06 9 86894981 86894981 C T SLC28A3 Missense_Mutation p.M579I 0.29 tolerated(0.43) benign(0.006) TCGA-EE-A29L-06 9 90219967 90219967 G A DAPK1 Missense_Mutation p.R54Q 0.55 deleterious(0) possibly_damaging(0.888) TCGA-EE-A29L-06 9 90219968 90219968 G A DAPK1 Silent p.R54R 0.53 TCGA-EE-A29L-06 9 90502037 90502037 G A SPATA31E1 Missense_Mutation p.A879T 0.41 deleterious(0.01) possibly_damaging(0.835) TCGA-EE-A29L-06 9 90534241 90534241 G A SPATA31C1 RNA 0.13 TCGA-EE-A29L-06 9 93375518 93375518 T G DIRAS2 Missense_Mutation p.I198L 0.18 tolerated(0.47) benign(0.001) TCGA-EE-A29L-06 9 93375766 93375766 G A DIRAS2 Missense_Mutation p.P115L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 9 94486368 94486368 G A ROR2 Missense_Mutation p.P803L 0.57 deleterious_low_confidence(0.02) possibly_damaging(0.448) TCGA-EE-A29L-06 9 95481688 95481688 C T BICD2 Silent p.E413E 0.15 TCGA-EE-A29L-06 9 96019389 96019389 C T WNK2 Missense_Mutation p.P784S 0.17 unknown(0) TCGA-EE-A29L-06 X 100533048 100533048 G A TAF7L Missense_Mutation p.A275V 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 X 10098093 10098093 C T WWC3 Silent p.L844L 0.98 TCGA-EE-A29L-06 X 101139513 101139513 G A ZMAT1 Missense_Mutation p.H296Y 0.88 deleterious(0) benign(0.015) TCGA-EE-A29L-06 X 101909135 101909135 C T GPRASP1 Silent p.P98P 0.96 TCGA-EE-A29L-06 X 107169963 107169963 C T MID2 Missense_Mutation p.S623F 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29L-06 X 107938566 107938566 C T COL4A5 Missense_Mutation p.R1631C 0.40 probably_damaging(1) TCGA-EE-A29L-06 X 109931860 109931860 C T CHRDL1 Missense_Mutation p.G317E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 X 110494210 110494210 C T CAPN6 Missense_Mutation p.D365N 0.48 tolerated(0.08) benign(0.068) TCGA-EE-A29L-06 X 112022744 112022744 G A AMOT Missense_Mutation p.P880S 0.53 unknown(0) TCGA-EE-A29L-06 X 115588792 115588792 A G SLC6A14 Silent p.S544S 0.94 TCGA-EE-A29L-06 X 115590032 115590032 C T SLC6A14 Missense_Mutation p.R614C 0.91 deleterious(0.02) possibly_damaging(0.714) TCGA-EE-A29L-06 X 115593146 115593146 G A CT83 Missense_Mutation p.S35L 0.44 tolerated(0.18) probably_damaging(0.978) TCGA-EE-A29L-06 X 118223173 118223173 C T KIAA1210 Missense_Mutation p.E674K 0.36 tolerated(0.38) benign(0.061) TCGA-EE-A29L-06 X 118223174 118223174 C T KIAA1210 Silent p.V673V 0.36 TCGA-EE-A29L-06 X 118921347 118921347 C T RPL39 Intron 0.97 TCGA-EE-A29L-06 X 125685875 125685875 G A DCAF12L1 Silent p.L239L 0.51 TCGA-EE-A29L-06 X 12736324 12736324 G A FRMPD4 Missense_Mutation p.E1127K 0.37 tolerated_low_confidence(0.14) benign(0.002) TCGA-EE-A29L-06 X 12736325 12736325 A T FRMPD4 Missense_Mutation p.E1127V 0.38 deleterious_low_confidence(0.02) benign(0.12) TCGA-EE-A29L-06 X 128691384 128691384 C T OCRL Silent p.F107F 0.45 TCGA-EE-A29L-06 X 128887159 128887159 T A XPNPEP2 Missense_Mutation p.S348T 0.41 tolerated(0.31) possibly_damaging(0.893) TCGA-EE-A29L-06 X 128924974 128924974 G A SASH3 Missense_Mutation p.S120N 0.95 tolerated(0.43) benign(0.322) TCGA-EE-A29L-06 X 130215884 130215884 C T ARHGAP36 Missense_Mutation p.P82L 0.95 tolerated(0.9) possibly_damaging(0.721) TCGA-EE-A29L-06 X 131212235 131212235 C T FRMD7 Missense_Mutation p.G604R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 X 131212788 131212788 C T FRMD7 Missense_Mutation p.M419I 0.97 tolerated(0.37) benign(0) TCGA-EE-A29L-06 X 131214289 131214289 C T FRMD7 Missense_Mutation p.R304Q 0.96 deleterious(0) probably_damaging(0.997) TCGA-EE-A29L-06 X 1327758 1327758 G A CRLF2 Silent p.T41T 0.42 TCGA-EE-A29L-06 X 134994479 134994479 G A SAGE1 Splice_Site p.X841_splice 0.95 TCGA-EE-A29L-06 X 139866342 139866342 G A CDR1 Silent p.L64L 0.92 TCGA-EE-A29L-06 X 140985541 140985541 A T MAGEC3 Missense_Mutation p.I619F 0.98 tolerated(0.06) possibly_damaging(0.624) TCGA-EE-A29L-06 X 140993259 140993259 G A MAGEC1 Silent p.Q23Q 0.96 TCGA-EE-A29L-06 X 142967326 142967326 G A UBE2NL Missense_Mutation p.E42K 0.52 deleterious(0) unknown(0) TCGA-EE-A29L-06 X 148037775 148037775 C G AFF2 Missense_Mutation p.P734A 0.48 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A29L-06 X 148038032 148038032 C T AFF2 Silent p.L819L 0.45 TCGA-EE-A29L-06 X 14868780 14868780 G A FANCB Missense_Mutation p.P448L 0.45 tolerated(0.1) benign(0.013) TCGA-EE-A29L-06 X 149919206 149919206 C T MTMR1 Missense_Mutation p.P516L 0.61 deleterious(0) possibly_damaging(0.69) TCGA-EE-A29L-06 X 150912180 150912180 G A CNGA2 Missense_Mutation p.S402N 0.45 tolerated(0.2) benign(0.022) TCGA-EE-A29L-06 X 151304242 151304242 C T MAGEA10 5'UTR 0.93 TCGA-EE-A29L-06 X 151424268 151424268 G A GABRA3 Missense_Mutation p.T178I 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29L-06 X 151532952 151532952 C T GABRA3 Missense_Mutation p.E31K 0.93 tolerated_low_confidence(0.16) benign(0) TCGA-EE-A29L-06 X 151900195 151900195 C T MAGEA12 Silent p.L202L 0.48 TCGA-EE-A29L-06 X 152835065 152835065 A T ATP2B3 Intron 0.45 TCGA-EE-A29L-06 X 152845804 152845804 G A ATP2B3 3'UTR 0.55 TCGA-EE-A29L-06 X 153001939 153001939 C T ABCD1 Silent p.V455V 0.50 TCGA-EE-A29L-06 X 153001940 153001940 C T ABCD1 Missense_Mutation p.R456C 0.49 tolerated(0.07) benign(0.339) TCGA-EE-A29L-06 X 153223333 153223333 G A HCFC1 Missense_Mutation p.S678F 0.96 deleterious(0) probably_damaging(0.992) TCGA-EE-A29L-06 X 153224144 153224144 G A HCFC1 Missense_Mutation p.P560L 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A29L-06 X 153296706 153296706 G A MECP2 Silent p.P203P 0.97 TCGA-EE-A29L-06 X 153296707 153296707 G A MECP2 Missense_Mutation p.P203L 0.97 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29L-06 X 153458976 153458976 C T OPN1MW Silent p.V274V 0.30 TCGA-EE-A29L-06 X 154175986 154175986 C T F8 Silent p.S700S 0.43 TCGA-EE-A29L-06 X 155003479 155003479 C T SPRY3 5'UTR 0.37 TCGA-EE-A29L-06 X 155171569 155171569 C T VAMP7 Silent p.F183F 0.49 TCGA-EE-A29L-06 X 155233513 155233513 G A IL9R Silent p.R142R 0.60 TCGA-EE-A29L-06 X 16847824 16847824 C T TXLNG Silent p.L265L 0.27 TCGA-EE-A29L-06 X 17065603 17065603 C T REPS2 Missense_Mutation p.S302L 0.96 tolerated(0.87) benign(0.085) TCGA-EE-A29L-06 X 18942232 18942232 G A PHKA2 Missense_Mutation p.H579Y 0.44 deleterious(0.04) benign(0.407) TCGA-EE-A29L-06 X 19817815 19817815 G A SH3KBP1 Intron 0.94 TCGA-EE-A29L-06 X 22291568 22291568 C T ZNF645 Missense_Mutation p.R154C 0.50 tolerated(0.17) benign(0.091) TCGA-EE-A29L-06 X 2670183 2670183 C T XG 5'UTR 0.29 TCGA-EE-A29L-06 X 27766203 27766203 G A DCAF8L2 Silent p.R397R 1.00 TCGA-EE-A29L-06 X 2867429 2867429 C T ARSE Missense_Mutation p.R257K 0.91 tolerated(0.05) benign(0.122) TCGA-EE-A29L-06 X 3030406 3030406 G A ARSF Missense_Mutation p.D528N 0.98 tolerated(0.4) benign(0.005) TCGA-EE-A29L-06 X 3227755 3227755 T A MXRA5 3'UTR 0.93 TCGA-EE-A29L-06 X 3238709 3238709 G A MXRA5 Missense_Mutation p.P1673S 0.53 tolerated(0.13) benign(0.01) TCGA-EE-A29L-06 X 35971789 35971789 G A CXorf22 Missense_Mutation p.G376E 0.95 deleterious(0.04) benign(0.377) TCGA-EE-A29L-06 X 35985768 35985768 A C CXorf22 Missense_Mutation p.K545Q 1.00 tolerated(1) benign(0.001) TCGA-EE-A29L-06 X 39933481 39933481 G A BCOR Missense_Mutation p.S373L 0.92 deleterious(0.03) benign(0.119) TCGA-EE-A29L-06 X 47308035 47308035 T G ZNF41 Silent p.T378T 0.96 TCGA-EE-A29L-06 X 48826440 48826440 C T KCND1 Missense_Mutation p.G80D 0.32 tolerated(0.27) benign(0.021) TCGA-EE-A29L-06 X 49061645 49061645 G A CACNA1F Silent p.F1962F 1.00 TCGA-EE-A29L-06 X 49061646 49061646 A T CACNA1F Missense_Mutation p.F1962Y 1.00 tolerated_low_confidence(1) benign(0.014) TCGA-EE-A29L-06 X 53622156 53622156 G A HUWE1 Missense_Mutation p.P1124L 0.93 possibly_damaging(0.74) TCGA-EE-A29L-06 X 54259292 54259292 C T WNK3 Missense_Mutation p.R1597Q 0.49 deleterious(0) probably_damaging(0.949) TCGA-EE-A29L-06 X 54587115 54587115 C T GNL3L 3'UTR 0.50 TCGA-EE-A29L-06 X 54587116 54587116 C T GNL3L 3'UTR 0.52 TCGA-EE-A29L-06 X 54784275 54784275 T G ITIH6 Silent p.L744L 0.95 TCGA-EE-A29L-06 X 55287011 55287011 C T PAGE3 Missense_Mutation p.G92E 0.45 tolerated(1) probably_damaging(0.993) TCGA-EE-A29L-06 X 64717044 64717044 G A ZC3H12B Missense_Mutation p.G214E 0.82 deleterious(0) probably_damaging(0.978) TCGA-EE-A29L-06 X 65242618 65242618 C T VSIG4 Intron 0.73 TCGA-EE-A29L-06 X 68748926 68748926 G A FAM155B Missense_Mutation p.E318K 0.41 deleterious(0) probably_damaging(0.969) TCGA-EE-A29L-06 X 69255270 69255270 C T EDA Silent p.F329F 0.41 TCGA-EE-A29L-06 X 71359742 71359742 G A NHSL2 Missense_Mutation p.D782N 0.82 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29L-06 X 73072305 73072305 C T XIST RNA 1.00 TCGA-EE-A29L-06 X 73961340 73961340 C T KIAA2022 Missense_Mutation p.G1018S 0.92 tolerated(0.12) possibly_damaging(0.789) TCGA-EE-A29L-06 X 73961524 73961524 G A KIAA2022 Silent p.T956T 0.90 TCGA-EE-A29L-06 X 74636998 74636998 C T ZDHHC15 Missense_Mutation p.M297I 0.52 tolerated(0.13) benign(0.001) TCGA-EE-A29L-06 X 77913437 77913437 G A ZCCHC5 Missense_Mutation p.P161S 0.97 tolerated(0.14) benign(0.044) TCGA-EE-A29L-06 X 79698282 79698282 G A FAM46D Missense_Mutation p.D82N 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 X 86773011 86773011 G A KLHL4 Missense_Mutation p.E39K 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.716) TCGA-EE-A29L-06 X 86888766 86888766 G A KLHL4 Missense_Mutation p.G523R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29L-06 X 89177266 89177266 C T TGIF2LX Missense_Mutation p.S61F 0.82 deleterious(0) probably_damaging(0.979) TCGA-EE-A29L-06 X 91090430 91090430 C T PCDH11X 5'UTR 0.46 TCGA-EE-A29L-06 X 9900626 9900626 C T SHROOM2 Silent p.S1101S 0.31 TCGA-EE-A29L-06 X 99922337 99922337 G A SRPX2 Missense_Mutation p.R343Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 10 101151331 101151331 C T CNNM1 3'UTR 0.33 TCGA-EE-A29M-06 10 101829527 101829527 C T CPN1 Missense_Mutation p.E174K 0.49 deleterious(0.05) possibly_damaging(0.489) TCGA-EE-A29M-06 10 102749036 102749036 C T C10orf2 Missense_Mutation p.R357C 0.42 deleterious(0.01) possibly_damaging(0.836) TCGA-EE-A29M-06 10 102781561 102781561 G A PDZD7 Silent p.T287T 0.47 TCGA-EE-A29M-06 10 102795274 102795274 G A SFXN3 Missense_Mutation p.G65E 0.47 tolerated(0.08) benign(0.33) TCGA-EE-A29M-06 10 103433355 103433355 G A FBXW4 Silent p.F144F 0.51 TCGA-EE-A29M-06 10 104620124 104620124 G A C10orf32 Silent p.Q59Q 0.59 TCGA-EE-A29M-06 10 104899169 104899169 G A NT5C2 Missense_Mutation p.L57F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 10 105006191 105006191 G A RPEL1 Silent p.G146G 0.43 TCGA-EE-A29M-06 10 107005328 107005328 C T SORCS3 Missense_Mutation p.S966F 0.41 deleterious(0.04) possibly_damaging(0.866) TCGA-EE-A29M-06 10 108338907 108338907 C T SORCS1 Silent p.Q1158Q 0.37 TCGA-EE-A29M-06 10 111967831 111967831 G T MXI1 Nonsense_Mutation p.E89* 0.40 TCGA-EE-A29M-06 10 114158657 114158657 A T ACSL5 Splice_Site p.X109_splice 0.38 TCGA-EE-A29M-06 10 114799871 114799871 C T TCF7L2 Missense_Mutation p.P180S 0.38 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A29M-06 10 115337790 115337790 C T HABP2 Missense_Mutation p.P152S 0.42 tolerated(1) benign(0.006) TCGA-EE-A29M-06 10 115889665 115889665 G A C10orf118 Missense_Mutation p.R723C 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 10 116213220 116213220 C T ABLIM1 Silent p.R488R 0.51 TCGA-EE-A29M-06 10 117061531 117061531 G A ATRNL1 Silent p.E932E 0.38 TCGA-EE-A29M-06 10 117849333 117849333 C T GFRA1 Silent p.R372R 0.38 TCGA-EE-A29M-06 10 118100268 118100268 C T CCDC172 Missense_Mutation p.S63F 0.26 tolerated(0.4) benign(0.014) TCGA-EE-A29M-06 10 118352031 118352031 G A PNLIPRP1 Missense_Mutation p.S103N 0.50 tolerated(0.87) benign(0) TCGA-EE-A29M-06 10 119003739 119003739 G A SLC18A2 Missense_Mutation p.E127K 0.35 deleterious(0) possibly_damaging(0.74) TCGA-EE-A29M-06 10 121658152 121658152 C T SEC23IP Missense_Mutation p.S126F 0.45 deleterious(0) possibly_damaging(0.498) TCGA-EE-A29M-06 10 123239450 123239450 G A FGFR2 Missense_Mutation p.S797F 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 10 123662086 123662086 G A ATE1 Silent p.I211I 0.39 TCGA-EE-A29M-06 10 123989947 123989947 G A TACC2 Missense_Mutation p.D2707N 0.42 probably_damaging(0.99) TCGA-EE-A29M-06 10 124094426 124094426 C T BTBD16 Silent p.L399L 0.42 TCGA-EE-A29M-06 10 124358388 124358388 G A DMBT1 Missense_Mutation p.D1019N 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29M-06 10 124380843 124380843 G A DMBT1 Missense_Mutation p.G1723D 0.43 deleterious(0.03) possibly_damaging(0.791) TCGA-EE-A29M-06 10 124457714 124457714 C T C10orf120 Silent p.Q181Q 0.38 TCGA-EE-A29M-06 10 125426514 125426514 G A GPR26 Silent p.K197K 0.60 TCGA-EE-A29M-06 10 127685183 127685183 G A FANK1 Missense_Mutation p.G155R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 10 128973812 128973812 G A FAM196A Missense_Mutation p.P283L 0.49 deleterious(0.02) benign(0.087) TCGA-EE-A29M-06 10 128973813 128973813 G T FAM196A Missense_Mutation p.P283T 0.47 deleterious(0.04) possibly_damaging(0.628) TCGA-EE-A29M-06 10 128973962 128973962 C T FAM196A Missense_Mutation p.G233E 0.56 tolerated(0.09) benign(0.191) TCGA-EE-A29M-06 10 129875895 129875895 G A PTPRE Silent p.Q580Q 0.49 TCGA-EE-A29M-06 10 15256413 15256413 C T FAM171A1 Missense_Mutation p.E392K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.454) TCGA-EE-A29M-06 10 18292003 18292003 C T SLC39A12 Intron 0.31 TCGA-EE-A29M-06 10 18331836 18331836 G A SLC39A12 3'UTR 0.38 TCGA-EE-A29M-06 10 24508789 24508789 C T KIAA1217 Missense_Mutation p.P102L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 10 24669879 24669879 G A KIAA1217 Missense_Mutation p.D146N 0.40 deleterious(0) possibly_damaging(0.836) TCGA-EE-A29M-06 10 24835165 24835165 C T KIAA1217 Missense_Mutation p.T1915I 0.31 deleterious(0.01) possibly_damaging(0.877) TCGA-EE-A29M-06 10 26414347 26414347 C T MYO3A Missense_Mutation p.R642W 0.43 deleterious(0) possibly_damaging(0.67) TCGA-EE-A29M-06 10 26462592 26462592 G A MYO3A Silent p.R1133R 0.46 TCGA-EE-A29M-06 10 27687295 27687295 G A PTCHD3 Silent p.I744I 0.35 TCGA-EE-A29M-06 10 28023670 28023670 G A MKX Missense_Mutation p.P185S 0.42 tolerated(0.44) probably_damaging(0.998) TCGA-EE-A29M-06 10 30656721 30656721 G A AL161651.1 5'Flank 0.37 TCGA-EE-A29M-06 10 31138079 31138079 G A ZNF438 Missense_Mutation p.P419S 0.29 tolerated(0.19) benign(0.066) TCGA-EE-A29M-06 10 31815672 31815672 G A ZEB1 Missense_Mutation p.R953Q 0.39 deleterious(0) possibly_damaging(0.638) TCGA-EE-A29M-06 10 43604645 43604645 C T RET Silent p.L410L 0.40 TCGA-EE-A29M-06 10 43659373 43659373 G A CSGALNACT2 Missense_Mutation p.R347Q 0.47 deleterious(0.03) benign(0.057) TCGA-EE-A29M-06 10 44052351 44052351 G A ZNF239 Missense_Mutation p.H393Y 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 10 46121896 46121896 G A ZFAND4 Missense_Mutation p.L459F 0.40 tolerated(0.05) possibly_damaging(0.851) TCGA-EE-A29M-06 10 46967611 46967611 C T SYT15 Missense_Mutation p.E156K 0.25 deleterious(0.03) probably_damaging(0.928) TCGA-EE-A29M-06 10 46999403 46999403 G A GPRIN2 Missense_Mutation p.D175N 0.24 tolerated(0.15) benign(0.044) TCGA-EE-A29M-06 10 47087410 47087410 C T NPY4R Silent p.H209H 0.22 TCGA-EE-A29M-06 10 48413836 48413836 C T GDF2 Nonsense_Mutation p.W344* 0.34 TCGA-EE-A29M-06 10 48414135 48414135 G A GDF2 Missense_Mutation p.P245S 0.40 tolerated(0.9) benign(0.114) TCGA-EE-A29M-06 10 48428863 48428863 C T GDF10 Silent p.R341R 0.40 TCGA-EE-A29M-06 10 52067844 52067844 G A SGMS1 Silent p.F320F 0.36 TCGA-EE-A29M-06 10 52103296 52103296 G A SGMS1 Silent p.I193I 0.32 TCGA-EE-A29M-06 10 52573735 52573735 C T A1CF Missense_Mutation p.G410E 0.40 deleterious(0.05) possibly_damaging(0.844) TCGA-EE-A29M-06 10 52619604 52619604 G A A1CF Intron 0.41 TCGA-EE-A29M-06 10 55755361 55755361 G A PCDH15 Intron 0.35 TCGA-EE-A29M-06 10 55973765 55973765 C T PCDH15 Silent p.R343R 0.30 TCGA-EE-A29M-06 10 56424023 56424023 C T PCDH15 5'UTR 0.30 TCGA-EE-A29M-06 10 5772729 5772729 C T FAM208B Missense_Mutation p.S256F 0.37 deleterious(0.01) benign(0.172) TCGA-EE-A29M-06 10 5836859 5836859 G A GDI2 Missense_Mutation p.A126V 0.41 deleterious(0.02) benign(0.372) TCGA-EE-A29M-06 10 61023888 61023888 C T FAM13C Silent p.L327L 0.39 TCGA-EE-A29M-06 10 61831431 61831431 G A ANK3 Missense_Mutation p.P3070S 0.39 benign(0.001) TCGA-EE-A29M-06 10 61835056 61835056 C T ANK3 Silent p.T1861T 0.37 TCGA-EE-A29M-06 10 62149314 62149314 C T ANK3 5'UTR 0.38 TCGA-EE-A29M-06 10 63519881 63519881 C T C10orf107 Missense_Mutation p.S118L 0.27 deleterious(0.01) benign(0.26) TCGA-EE-A29M-06 10 73485149 73485149 C T CDH23 Missense_Mutation p.R1156W 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29M-06 10 75541846 75541846 A G CHCHD1 Missense_Mutation p.S5G 0.35 deleterious(0.01) possibly_damaging(0.629) TCGA-EE-A29M-06 10 75542287 75542287 C T CHCHD1 Intron 0.44 TCGA-EE-A29M-06 10 75673310 75673310 C T PLAU Silent p.S158S 0.40 TCGA-EE-A29M-06 10 7745461 7745461 C T ITIH2 Missense_Mutation p.P22S 0.33 deleterious_low_confidence(0.04) benign(0.15) TCGA-EE-A29M-06 10 7786917 7786917 G A ITIH2 Missense_Mutation p.G858R 0.36 deleterious(0.02) possibly_damaging(0.879) TCGA-EE-A29M-06 10 82034872 82034872 C T MAT1A Silent p.G284G 0.59 TCGA-EE-A29M-06 10 83635829 83635829 T - NRG3 Frame_Shift_Del p.S245Lfs*62 0.33 TCGA-EE-A29M-06 10 87407252 87407252 G A GRID1 Intron 0.54 TCGA-EE-A29M-06 10 87966247 87966247 G A GRID1 Missense_Mutation p.P132S 0.41 tolerated(0.64) probably_damaging(0.999) TCGA-EE-A29M-06 10 88769542 88769542 G A RP11-96C23.10 RNA 0.36 TCGA-EE-A29M-06 10 88769543 88769543 G A RP11-96C23.10 RNA 0.35 TCGA-EE-A29M-06 10 91143253 91143253 G A IFIT1B Silent p.V61V 0.44 TCGA-EE-A29M-06 10 91518632 91518632 C T KIF20B Missense_Mutation p.S1518F 0.21 deleterious(0) benign(0.317) TCGA-EE-A29M-06 10 94109449 94109449 G A MARCH5 Missense_Mutation p.R192Q 0.43 tolerated(0.29) benign(0.042) TCGA-EE-A29M-06 10 95103648 95103648 C T MYOF Missense_Mutation p.E1431K 0.40 deleterious(0.03) benign(0.21) TCGA-EE-A29M-06 10 95791276 95791276 G A PLCE1 Missense_Mutation p.R158K 0.35 tolerated_low_confidence(0.13) benign(0.008) TCGA-EE-A29M-06 10 96702020 96702020 G A CYP2C9 Missense_Mutation p.G135R 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 10 97625967 97625967 T C ENTPD1 Missense_Mutation p.Y466H 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 10 99995226 99995226 C T R3HCC1L Missense_Mutation p.P693S 0.47 deleterious(0.03) probably_damaging(0.959) TCGA-EE-A29M-06 11 100179181 100179181 G A CNTN5 Missense_Mutation p.G904E 0.24 tolerated(0.2) probably_damaging(0.997) TCGA-EE-A29M-06 11 1018158 1018158 T C MUC6 Missense_Mutation p.N1548S 0.24 unknown(0) TCGA-EE-A29M-06 11 102743833 102743833 C A MMP12 RNA 0.40 TCGA-EE-A29M-06 11 10776652 10776652 C T CTR9 Missense_Mutation p.R98W 0.19 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A29M-06 11 108381909 108381909 C T EXPH5 Missense_Mutation p.R1442K 0.33 tolerated(0.15) benign(0.09) TCGA-EE-A29M-06 11 1093686 1093686 C T MUC2 Silent p.P1835P 0.37 TCGA-EE-A29M-06 11 1093756 1093756 C T MUC2 Missense_Mutation p.P1859S 0.13 unknown(0) TCGA-EE-A29M-06 11 1095330 1095330 C T MUC2 Silent p.C2050C 0.23 TCGA-EE-A29M-06 11 1095331 1095331 C T MUC2 Missense_Mutation p.P2051S 0.21 unknown(0) TCGA-EE-A29M-06 11 110449948 110449948 G A ARHGAP20 3'UTR 0.36 TCGA-EE-A29M-06 11 111844759 111844759 G A DIXDC1 Missense_Mutation p.G110E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 113650778 113650778 C T CLDN25 Silent p.S87S 0.41 TCGA-EE-A29M-06 11 113802575 113802575 C T HTR3B Silent p.I118I 0.42 TCGA-EE-A29M-06 11 113934125 113934125 G A ZBTB16 Missense_Mutation p.D35N 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 114453326 114453326 C T NXPE4 Missense_Mutation p.E172K 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A29M-06 11 119044590 119044590 C T NLRX1 Missense_Mutation p.S211F 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 11 119510622 119510622 G A RP11-196E1.3 RNA 0.33 TCGA-EE-A29M-06 11 121414296 121414296 C T SORL1 Silent p.I575I 0.40 TCGA-EE-A29M-06 11 1214719 1214719 G A MUC5AC RNA 0.23 TCGA-EE-A29M-06 11 122850164 122850164 C T BSX Silent p.G88G 0.38 TCGA-EE-A29M-06 11 123676285 123676285 C T OR6M1 Missense_Mutation p.R258K 0.38 tolerated(0.11) possibly_damaging(0.759) TCGA-EE-A29M-06 11 123847420 123847420 C T OR10S1 Missense_Mutation p.G327S 0.31 tolerated_low_confidence(0.09) benign(0.005) TCGA-EE-A29M-06 11 123909203 123909203 C T OR10G7 Missense_Mutation p.G169E 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 11 124252919 124252919 G A OR8B2 Silent p.F107F 0.29 TCGA-EE-A29M-06 11 124440633 124440633 C T OR8A1 Silent p.I223I 0.45 TCGA-EE-A29M-06 11 124617446 124617446 G A VSIG2 Silent p.L323L 0.34 TCGA-EE-A29M-06 11 124637140 124637140 G A MSANTD2 Missense_Mutation p.L486F 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A29M-06 11 124745128 124745128 G A ROBO3 Missense_Mutation p.R732K 0.50 tolerated(0.93) possibly_damaging(0.796) TCGA-EE-A29M-06 11 125237848 125237848 C T PKNOX2 Missense_Mutation p.A65V 0.23 tolerated(0.07) benign(0.292) TCGA-EE-A29M-06 11 125237849 125237849 C T PKNOX2 Silent p.A65A 0.23 TCGA-EE-A29M-06 11 12535050 12535050 C T PARVA Intron 0.45 TCGA-EE-A29M-06 11 125476198 125476198 C T STT3A Silent p.V206V 0.34 TCGA-EE-A29M-06 11 125647308 125647308 C T PATE2 Missense_Mutation p.S104N 0.40 tolerated(0.17) benign(0.021) TCGA-EE-A29M-06 11 1264202 1264202 G A MUC5B Missense_Mutation p.G2031E 0.28 unknown(0) TCGA-EE-A29M-06 11 128680672 128680672 C T FLI1 Missense_Mutation p.S383F 0.44 deleterious(0) possibly_damaging(0.602) TCGA-EE-A29M-06 11 128786570 128786570 G A KCNJ5 Missense_Mutation p.E402K 0.41 tolerated(0.19) benign(0.002) TCGA-EE-A29M-06 11 133795736 133795736 G A IGSF9B Silent p.I644I 0.50 TCGA-EE-A29M-06 11 133801645 133801645 C T IGSF9B Missense_Mutation p.E386K 0.31 tolerated(0.26) probably_damaging(0.972) TCGA-EE-A29M-06 11 14063132 14063132 C T SPON1 RNA 0.19 TCGA-EE-A29M-06 11 14279311 14279311 C T SPON1 RNA 0.11 TCGA-EE-A29M-06 11 1491702 1491702 G A MOB2 Silent p.S169S 0.13 TCGA-EE-A29M-06 11 1642723 1642723 A C KRTAP5-4 Missense_Mutation p.S201A 0.28 tolerated_low_confidence(0.38) unknown(0) TCGA-EE-A29M-06 11 18054885 18054885 G A TPH1 Missense_Mutation p.S113F 0.14 deleterious(0) probably_damaging(0.943) TCGA-EE-A29M-06 11 18637314 18637314 G A SPTY2D1 Silent p.F169F 0.15 TCGA-EE-A29M-06 11 18955789 18955789 G A MRGPRX1 Silent p.V181V 0.13 TCGA-EE-A29M-06 11 18956034 18956034 G A MRGPRX1 Missense_Mutation p.P100S 0.19 tolerated(0.72) benign(0.014) TCGA-EE-A29M-06 11 19077395 19077395 G A MRGPRX2 Silent p.F185F 0.21 TCGA-EE-A29M-06 11 19169202 19169202 C T ZDHHC13 Missense_Mutation p.P119L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 20623211 20623211 G A SLC6A5 Silent p.Q180Q 0.13 TCGA-EE-A29M-06 11 22283728 22283728 C T ANO5 Silent p.L562L 0.14 TCGA-EE-A29M-06 11 22399224 22399224 G A SLC17A6 Missense_Mutation p.E563K 0.10 tolerated(0.28) benign(0.354) TCGA-EE-A29M-06 11 22707215 22707215 G A GAS2 Silent p.G49G 0.18 TCGA-EE-A29M-06 11 2444171 2444171 C T TRPM5 Silent p.G32G 0.34 TCGA-EE-A29M-06 11 24759776 24759776 G A LUZP2 Missense_Mutation p.M87I 0.27 tolerated(0.09) probably_damaging(0.946) TCGA-EE-A29M-06 11 2592627 2592627 C T KCNQ1 Missense_Mutation p.A226V 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29M-06 11 26463553 26463553 T C ANO3 Silent p.A45A 0.13 TCGA-EE-A29M-06 11 32704999 32704999 A T CCDC73 Intron 0.33 TCGA-EE-A29M-06 11 34475378 34475378 C T CAT Missense_Mutation p.P206S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 36594964 36594964 C T RAG1 Missense_Mutation p.S37F 0.26 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A29M-06 11 40136054 40136054 G A LRRC4C Missense_Mutation p.H597Y 0.11 tolerated_low_confidence(0.1) benign(0.424) TCGA-EE-A29M-06 11 40136856 40136856 C A LRRC4C Silent p.R329R 0.15 TCGA-EE-A29M-06 11 40137536 40137536 C T LRRC4C Missense_Mutation p.E103K 0.22 deleterious(0.05) possibly_damaging(0.876) TCGA-EE-A29M-06 11 40137648 40137648 T A LRRC4C Missense_Mutation p.K65N 0.43 deleterious(0.01) benign(0.023) TCGA-EE-A29M-06 11 44297126 44297126 C T ALX4 Silent p.K183K 0.22 TCGA-EE-A29M-06 11 44941473 44941473 G A TSPAN18 Missense_Mutation p.E180K 0.17 tolerated(0.11) benign(0.003) TCGA-EE-A29M-06 11 44941525 44941525 G A TSPAN18 Missense_Mutation p.G197E 0.36 tolerated(0.27) benign(0.393) TCGA-EE-A29M-06 11 45117336 45117336 C T PRDM11 5'UTR 0.18 TCGA-EE-A29M-06 11 45671922 45671922 C T CHST1 Silent p.K184K 0.17 TCGA-EE-A29M-06 11 45945705 45945705 G A GYLTL1B Silent p.R123R 0.18 TCGA-EE-A29M-06 11 4673996 4673996 C T OR51E1 Silent p.S80S 0.28 TCGA-EE-A29M-06 11 4790669 4790669 G A OR51F1 Missense_Mutation p.P160L 0.12 deleterious(0.02) benign(0.424) TCGA-EE-A29M-06 11 48185152 48185152 C T PTPRJ Missense_Mutation p.P1234L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 48328225 48328225 T A OR4S1 Missense_Mutation p.F151I 0.43 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29M-06 11 48346802 48346802 C T OR4C3 Missense_Mutation p.P104S 0.19 deleterious(0) probably_damaging(0.985) TCGA-EE-A29M-06 11 48346885 48346885 T A OR4C3 Missense_Mutation p.F131L 0.08 tolerated(0.34) benign(0.012) TCGA-EE-A29M-06 11 4842709 4842709 C T OR51F2 Missense_Mutation p.P32S 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29M-06 11 4842710 4842710 C T OR51F2 Missense_Mutation p.P32L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 11 4843021 4843021 C T OR51F2 Missense_Mutation p.R136C 0.32 deleterious(0.02) possibly_damaging(0.855) TCGA-EE-A29M-06 11 48510731 48510731 T A OR4A47 Missense_Mutation p.H129Q 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.617) TCGA-EE-A29M-06 11 4869671 4869671 G A OR51S1 Silent p.L256L 0.16 TCGA-EE-A29M-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.31 deleterious(0) probably_damaging(0.965) TCGA-EE-A29M-06 11 4869952 4869952 G A OR51S1 Missense_Mutation p.L163F 0.10 deleterious(0.03) probably_damaging(0.911) TCGA-EE-A29M-06 11 4944799 4944799 C T OR51G1 Missense_Mutation p.M257I 0.36 tolerated(0.18) benign(0.173) TCGA-EE-A29M-06 11 4976476 4976476 G A OR51A2 Silent p.L156L 0.08 TCGA-EE-A29M-06 11 49831528 49831528 A T RP11-707M1.1 RNA 0.31 TCGA-EE-A29M-06 11 5079978 5079978 C T OR52E2 Missense_Mutation p.G294R 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-EE-A29M-06 11 5248179 5248179 C T HBB Missense_Mutation p.G25S 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29M-06 11 5344541 5344541 C T OR51B2 3'UTR 0.25 TCGA-EE-A29M-06 11 5345133 5345133 G A OR51B2 Missense_Mutation p.S132F 0.16 deleterious(0.01) benign(0.114) TCGA-EE-A29M-06 11 5363955 5363955 G A OR51B5 Missense_Mutation p.P267L 0.26 deleterious(0) possibly_damaging(0.848) TCGA-EE-A29M-06 11 5373596 5373596 C T OR51B6 Missense_Mutation p.P287S 0.11 deleterious(0.02) probably_damaging(0.93) TCGA-EE-A29M-06 11 5510839 5510839 G A OR52D1 Silent p.K301K 0.19 TCGA-EE-A29M-06 11 551919 551919 C T LRRC56 Silent p.L330L 0.19 TCGA-EE-A29M-06 11 55322738 55322738 C T OR4C15 Missense_Mutation p.S319F 0.35 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-EE-A29M-06 11 55541558 55541558 C T OR5D13 Silent p.I215I 0.32 TCGA-EE-A29M-06 11 55735717 55735717 C T OR10AG1 Missense_Mutation p.D75N 0.38 tolerated(0.86) benign(0.014) TCGA-EE-A29M-06 11 55890659 55890659 G A OR8H3 Missense_Mutation p.D271N 0.46 deleterious(0.01) possibly_damaging(0.529) TCGA-EE-A29M-06 11 55999685 55999685 G A OR5T2 Missense_Mutation p.P326L 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29M-06 11 56000028 56000028 C T OR5T2 Missense_Mutation p.E212K 0.36 tolerated(0.28) possibly_damaging(0.461) TCGA-EE-A29M-06 11 56019945 56019945 T A OR5T3 Nonsense_Mutation p.Y90* 0.40 TCGA-EE-A29M-06 11 5602888 5602888 G A OR52B6 Missense_Mutation p.G261E 0.16 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29M-06 11 56085842 56085842 C T OR8K3 Silent p.I20I 0.41 TCGA-EE-A29M-06 11 56085890 56085890 G A OR8K3 Silent p.V36V 0.40 TCGA-EE-A29M-06 11 56086049 56086049 G A OR8K3 Silent p.K89K 0.39 TCGA-EE-A29M-06 11 56114262 56114262 C T OR8K1 Missense_Mutation p.H250Y 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29M-06 11 56237476 56237476 G A OR5M3 Silent p.F166F 0.42 TCGA-EE-A29M-06 11 56409140 56409140 C T OR5AP2 Missense_Mutation p.G259E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 56756601 56756601 C T OR5AK2 Silent p.I71I 0.45 TCGA-EE-A29M-06 11 57076666 57076666 G A TNKS1BP1 Silent p.S1173S 0.45 TCGA-EE-A29M-06 11 57154874 57154874 G A PRG2 3'UTR 0.46 TCGA-EE-A29M-06 11 57427179 57427179 C T CLP1 Silent p.G77G 0.34 TCGA-EE-A29M-06 11 57947137 57947137 C T OR9Q1 Missense_Mutation p.S74L 0.42 deleterious(0) possibly_damaging(0.839) TCGA-EE-A29M-06 11 57970739 57970739 C T OR1S2 Silent p.L305L 0.40 TCGA-EE-A29M-06 11 5842052 5842052 C T OR52N2 Missense_Mutation p.L163F 0.18 tolerated(1) benign(0.002) TCGA-EE-A29M-06 11 5862892 5862892 G A OR52E6 Missense_Mutation p.T79I 0.29 deleterious(0.01) possibly_damaging(0.886) TCGA-EE-A29M-06 11 58722784 58722784 G A GLYATL1 Missense_Mutation p.G181E 0.40 tolerated(1) benign(0.002) TCGA-EE-A29M-06 11 5906312 5906312 C T OR52E4 Missense_Mutation p.R264C 0.14 deleterious(0.03) probably_damaging(0.913) TCGA-EE-A29M-06 11 59863121 59863121 G A MS4A2 Missense_Mutation p.D243N 0.35 deleterious(0.04) possibly_damaging(0.896) TCGA-EE-A29M-06 11 6008029 6008029 C T OR52L1 Nonsense_Mutation p.W44* 0.31 TCGA-EE-A29M-06 11 6023558 6023558 G A OR56A4 Missense_Mutation p.S274F 0.11 tolerated(0.1) benign(0.013) TCGA-EE-A29M-06 11 6024232 6024232 C T OR56A4 Silent p.R49R 0.13 TCGA-EE-A29M-06 11 61026432 61026432 G A VWCE Silent p.S861S 0.54 TCGA-EE-A29M-06 11 61323677 61323677 C T SYT7 Missense_Mutation p.A12T 0.38 tolerated_low_confidence(0.13) possibly_damaging(0.682) TCGA-EE-A29M-06 11 62290342 62290342 G A AHNAK Silent p.I3849I 0.45 TCGA-EE-A29M-06 11 62291642 62291642 G A AHNAK Missense_Mutation p.S3416F 0.51 probably_damaging(0.956) TCGA-EE-A29M-06 11 62362077 62362077 G A MTA2 Missense_Mutation p.P535S 0.48 tolerated_low_confidence(0.68) benign(0.005) TCGA-EE-A29M-06 11 6265277 6265277 G A CNGA4 Missense_Mutation p.E456K 0.35 deleterious(0) probably_damaging(0.983) TCGA-EE-A29M-06 11 6292693 6292693 G A CCKBR Missense_Mutation p.D422N 0.14 tolerated(0.08) benign(0.002) TCGA-EE-A29M-06 11 63978283 63978283 T G FERMT3 Missense_Mutation p.F121V 0.42 tolerated(0.05) possibly_damaging(0.464) TCGA-EE-A29M-06 11 64559445 64559445 G A MAP4K2 Silent p.C676C 0.45 TCGA-EE-A29M-06 11 64678165 64678165 C T ATG2A Missense_Mutation p.G544S 0.43 tolerated(1) benign(0.001) TCGA-EE-A29M-06 11 65088615 65088615 C T CDC42EP2 Silent p.P82P 0.44 TCGA-EE-A29M-06 11 65088616 65088616 T A CDC42EP2 Missense_Mutation p.F83I 0.44 tolerated(0.34) probably_damaging(0.989) TCGA-EE-A29M-06 11 65272040 65272040 G A MALAT1 RNA 0.43 TCGA-EE-A29M-06 11 65314078 65314078 G A LTBP3 Intron 0.26 TCGA-EE-A29M-06 11 65314079 65314079 G A LTBP3 Intron 0.26 TCGA-EE-A29M-06 11 65392945 65392945 C T PCNXL3 Silent p.P1033P 0.36 TCGA-EE-A29M-06 11 65392946 65392946 C T PCNXL3 Missense_Mutation p.P1034S 0.37 tolerated(0.18) benign(0.017) TCGA-EE-A29M-06 11 65715081 65715081 G A TSGA10IP RNA 0.34 TCGA-EE-A29M-06 11 65792909 65792909 G A CATSPER1 Silent p.L314L 0.39 TCGA-EE-A29M-06 11 6638288 6638288 G A TPP1 Missense_Mutation p.P202L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 11 66457663 66457663 G A SPTBN2 Missense_Mutation p.A1886V 0.49 tolerated(1) benign(0.338) TCGA-EE-A29M-06 11 67564286 67564286 T A FAM86C2P RNA 0.49 TCGA-EE-A29M-06 11 6913459 6913459 G A OR2D2 Silent p.V91V 0.11 TCGA-EE-A29M-06 11 6942547 6942547 G A OR2D3 Silent p.R105R 0.16 TCGA-EE-A29M-06 11 69934154 69934154 C T ANO1 Silent p.L135L 0.36 TCGA-EE-A29M-06 11 7064301 7064301 G A NLRP14 Nonsense_Mutation p.W348* 0.14 TCGA-EE-A29M-06 11 71155062 71155062 A T DHCR7 Missense_Mutation p.Y100N 0.44 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A29M-06 11 71507081 71507081 A T FAM86C1 Nonsense_Mutation p.K94* 0.09 TCGA-EE-A29M-06 11 72145672 72145672 C T CLPB 5'UTR 0.47 TCGA-EE-A29M-06 11 72406880 72406880 C T ARAP1 Missense_Mutation p.M1101I 0.43 deleterious(0) probably_damaging(0.965) TCGA-EE-A29M-06 11 72695196 72695196 G A FCHSD2 Silent p.T214T 0.43 TCGA-EE-A29M-06 11 73843971 73843971 G A C2CD3 Missense_Mutation p.H379Y 0.34 tolerated(0.58) benign(0.005) TCGA-EE-A29M-06 11 74915662 74915662 C T SLCO2B1 3'UTR 0.43 TCGA-EE-A29M-06 11 76371863 76371863 G A LRRC32 Silent p.F258F 0.40 TCGA-EE-A29M-06 11 77085397 77085397 C T PAK1 Silent p.E151E 0.42 TCGA-EE-A29M-06 11 8132611 8132611 C T RIC3 Silent p.V248V 0.27 TCGA-EE-A29M-06 11 83180405 83180405 G A DLG2 Missense_Mutation p.P820S 0.43 tolerated(0.06) benign(0.234) TCGA-EE-A29M-06 11 83182697 83182697 G A DLG2 Silent p.F806F 0.57 TCGA-EE-A29M-06 11 8474411 8474411 C T STK33 Missense_Mutation p.E277K 0.34 tolerated(0.06) benign(0.314) TCGA-EE-A29M-06 11 88911834 88911834 G A TYR Nonsense_Mutation p.W238* 0.50 TCGA-EE-A29M-06 11 92532816 92532816 C T FAT3 Missense_Mutation p.P2213S 0.41 probably_damaging(1) TCGA-EE-A29M-06 11 92532817 92532817 C T FAT3 Missense_Mutation p.P2213L 0.41 probably_damaging(1) TCGA-EE-A29M-06 11 93466516 93466516 C T KIAA1731 3'Flank 0.36 TCGA-EE-A29M-06 11 93796735 93796735 G A HEPHL1 Silent p.G159G 0.47 TCGA-EE-A29M-06 11 93806484 93806484 C T HEPHL1 Silent p.I461I 0.32 TCGA-EE-A29M-06 11 93819200 93819200 G A HEPHL1 Missense_Mutation p.R642K 0.37 tolerated(1) benign(0.001) TCGA-EE-A29M-06 12 100169344 100169344 G A ANKS1B Missense_Mutation p.P315S 0.22 tolerated(0.13) benign(0.004) TCGA-EE-A29M-06 12 100813822 100813822 C T SLC17A8 Missense_Mutation p.S552F 0.26 deleterious(0.05) benign(0.107) TCGA-EE-A29M-06 12 101430900 101430900 C T ANO4 Missense_Mutation p.S255F 0.25 deleterious(0) possibly_damaging(0.694) TCGA-EE-A29M-06 12 102025848 102025848 G A MYBPC1 Missense_Mutation p.G138E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 104044340 104044340 G A STAB2 Missense_Mutation p.G414E 0.33 tolerated(0.13) possibly_damaging(0.846) TCGA-EE-A29M-06 12 107075789 107075789 C T RFX4 Missense_Mutation p.P121S 0.23 tolerated(0.23) benign(0.037) TCGA-EE-A29M-06 12 10787204 10787204 C T STYK1 Missense_Mutation p.R5Q 0.16 deleterious_low_confidence(0.02) benign(0.147) TCGA-EE-A29M-06 12 108642090 108642090 G A WSCD2 Silent p.T556T 0.28 TCGA-EE-A29M-06 12 108642091 108642091 G A WSCD2 Missense_Mutation p.G557S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 109717605 109717605 G A FOXN4 Silent p.S475S 0.21 TCGA-EE-A29M-06 12 109845641 109845641 G A MYO1H Missense_Mutation p.D344N 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29M-06 12 109876414 109876414 G A MYO1H Silent p.R745R 0.43 TCGA-EE-A29M-06 12 110352349 110352349 G A TCHP Missense_Mutation p.E413K 0.39 deleterious(0) probably_damaging(0.933) TCGA-EE-A29M-06 12 110815261 110815261 C T ANAPC7 Missense_Mutation p.D466N 0.23 tolerated(0.15) benign(0.009) TCGA-EE-A29M-06 12 110925695 110925695 G A FAM216A Missense_Mutation p.R217K 0.24 tolerated_low_confidence(0.14) benign(0.05) TCGA-EE-A29M-06 12 111066571 111066571 G A TCTN1 Splice_Site p.X158_splice 0.29 TCGA-EE-A29M-06 12 111066751 111066751 C T TCTN1 Intron 0.42 TCGA-EE-A29M-06 12 111317782 111317782 G A CCDC63 Missense_Mutation p.E188K 0.27 deleterious(0.04) benign(0.128) TCGA-EE-A29M-06 12 111321970 111321970 G A CCDC63 Silent p.E330E 0.22 TCGA-EE-A29M-06 12 112648045 112648045 G A HECTD4 Silent p.T2401T 0.27 TCGA-EE-A29M-06 12 113629415 113629415 C T RITA1 Silent p.S201S 0.22 TCGA-EE-A29M-06 12 116457155 116457155 G A MED13L Missense_Mutation p.P295S 0.27 tolerated(0.42) unknown(0) TCGA-EE-A29M-06 12 117612501 117612501 G A FBXO21 Missense_Mutation p.L232F 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A29M-06 12 117612502 117612502 G A FBXO21 Silent p.T231T 0.22 TCGA-EE-A29M-06 12 117652954 117652954 C T NOS1 3'Flank 0.25 TCGA-EE-A29M-06 12 117655926 117655926 C T NOS1 Missense_Mutation p.R1439Q 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29M-06 12 117968819 117968819 C T KSR2 Splice_Site p.X577_splice 0.28 TCGA-EE-A29M-06 12 119419818 119419818 G A SRRM4 Missense_Mutation p.R44K 0.31 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A29M-06 12 119937890 119937890 G A CCDC60 Missense_Mutation p.G189S 0.17 deleterious(0) probably_damaging(0.985) TCGA-EE-A29M-06 12 119942973 119942973 C T CCDC60 Missense_Mutation p.P250S 0.26 deleterious(0) probably_damaging(0.959) TCGA-EE-A29M-06 12 119942974 119942974 C T CCDC60 Missense_Mutation p.P250L 0.27 deleterious(0) probably_damaging(0.971) TCGA-EE-A29M-06 12 120110193 120110193 C T PRKAB1 Nonsense_Mutation p.R83* 0.24 TCGA-EE-A29M-06 12 120288023 120288023 G A CIT Silent p.I157I 0.24 TCGA-EE-A29M-06 12 120569807 120569807 G A GCN1L1 Missense_Mutation p.S2446L 0.19 benign(0.011) TCGA-EE-A29M-06 12 120966947 120966947 T C COQ5 5'UTR 0.42 TCGA-EE-A29M-06 12 122361869 122361869 G A WDR66 Silent p.K240K 0.28 TCGA-EE-A29M-06 12 123341062 123341062 G A HIP1R Silent p.Q495Q 0.24 TCGA-EE-A29M-06 12 123351856 123351856 G A VPS37B Missense_Mutation p.P222L 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A29M-06 12 123494574 123494574 C T PITPNM2 Missense_Mutation p.E156K 0.30 deleterious(0) possibly_damaging(0.676) TCGA-EE-A29M-06 12 123950372 123950372 C T SNRNP35 Silent p.A100A 0.34 TCGA-EE-A29M-06 12 124293432 124293432 C T DNAH10 Missense_Mutation p.H908Y 0.30 benign(0.284) TCGA-EE-A29M-06 12 12510307 12510307 T A LOH12CR1 5'UTR 0.25 TCGA-EE-A29M-06 12 125441343 125441343 G - DHX37 Frame_Shift_Del p.R783Afs*8 0.21 TCGA-EE-A29M-06 12 125900131 125900131 C T TMEM132B Silent p.D333D 0.22 TCGA-EE-A29M-06 12 126128660 126128660 G A TMEM132B Silent p.K487K 0.19 TCGA-EE-A29M-06 12 126137133 126137133 C T TMEM132B Silent p.I682I 0.30 TCGA-EE-A29M-06 12 130846112 130846112 G A PIWIL1 Missense_Mutation p.G646R 0.23 deleterious(0) probably_damaging(0.971) TCGA-EE-A29M-06 12 132498142 132498142 C T EP400 Missense_Mutation p.S1240F 0.24 unknown(0) TCGA-EE-A29M-06 12 133385072 133385072 G A GOLGA3 Missense_Mutation p.P195S 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29M-06 12 133779124 133779124 C T ZNF268 Silent p.A284A 0.24 TCGA-EE-A29M-06 12 14650954 14650954 C T ATF7IP Missense_Mutation p.P1254S 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29M-06 12 14778764 14778764 C T GUCY2C Missense_Mutation p.V779I 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 14832636 14832636 C T GUCY2C Missense_Mutation p.R262Q 0.25 tolerated(0.6) benign(0.009) TCGA-EE-A29M-06 12 15713206 15713206 C T PTPRO Missense_Mutation p.P903S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29M-06 12 18234100 18234100 G A RERGL 3'UTR 0.11 TCGA-EE-A29M-06 12 18891174 18891174 C T CAPZA3 5'UTR 0.20 TCGA-EE-A29M-06 12 2016688 2016688 G A CACNA2D4 Silent p.V233V 0.20 TCGA-EE-A29M-06 12 2064598 2064598 C T DCP1B Silent p.Q217Q 0.30 TCGA-EE-A29M-06 12 21028248 21028248 C T SLCO1B3 Silent p.S269S 0.24 TCGA-EE-A29M-06 12 21172237 21172237 G A SLCO1B7 Silent p.P47P 0.29 TCGA-EE-A29M-06 12 21175919 21175919 C T SLCO1B7 Missense_Mutation p.S159F 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29M-06 12 21205142 21205142 C T SLCO1B7 Silent p.L435L 0.18 TCGA-EE-A29M-06 12 21918790 21918790 C T KCNJ8 Missense_Mutation p.R381K 0.24 tolerated(0.13) possibly_damaging(0.899) TCGA-EE-A29M-06 12 21918844 21918844 G A KCNJ8 Missense_Mutation p.S363F 0.24 tolerated(0.48) benign(0.299) TCGA-EE-A29M-06 12 21926205 21926205 C T KCNJ8 Missense_Mutation p.E116K 0.29 tolerated(0.64) benign(0) TCGA-EE-A29M-06 12 21960358 21960358 A T ABCC9 Missense_Mutation p.F1457L 0.22 deleterious(0.01) benign(0.011) TCGA-EE-A29M-06 12 21995392 21995392 G A ABCC9 Missense_Mutation p.T1110I 0.18 deleterious(0) benign(0.361) TCGA-EE-A29M-06 12 21997802 21997802 G A ABCC9 Silent p.F1048F 0.18 TCGA-EE-A29M-06 12 22811976 22811976 C T ETNK1 Missense_Mutation p.H238Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 22812064 22812064 T G ETNK1 Missense_Mutation p.F267C 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 12 25148891 25148891 G A C12orf77 Missense_Mutation p.P86L 0.33 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A29M-06 12 25261710 25261710 G A CASC1 Silent p.A647A 0.25 TCGA-EE-A29M-06 12 2621981 2621981 G A CACNA1C Silent p.E407E 0.26 TCGA-EE-A29M-06 12 26572051 26572051 G A ITPR2 Silent p.L2347L 0.24 TCGA-EE-A29M-06 12 30790024 30790024 G A IPO8 Missense_Mutation p.P863S 0.30 tolerated(0.06) possibly_damaging(0.831) TCGA-EE-A29M-06 12 3121375 3121375 C T TEAD4 Missense_Mutation p.R111C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 12 31595755 31595755 G A DENND5B Missense_Mutation p.P656S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 12 31944699 31944699 T A H3F3C Missense_Mutation p.R134S 0.19 deleterious_low_confidence(0) benign(0.005) TCGA-EE-A29M-06 12 32487577 32487577 C T BICD1 Missense_Mutation p.S743F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 32491742 32491742 G A BICD1 Missense_Mutation p.D865N 0.32 tolerated_low_confidence(0.21) probably_damaging(0.971) TCGA-EE-A29M-06 12 33559866 33559866 C T SYT10 Missense_Mutation p.R312Q 0.26 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A29M-06 12 344366 344366 G A SLC6A13 Missense_Mutation p.P241S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 3788196 3788196 C T EFCAB4B Missense_Mutation p.E137K 0.27 tolerated(0.45) benign(0.005) TCGA-EE-A29M-06 12 40037717 40037717 C T C12orf40 Missense_Mutation p.P67L 0.20 tolerated(0.08) benign(0.316) TCGA-EE-A29M-06 12 40692934 40692934 C T LRRK2 Missense_Mutation p.S1124F 0.23 tolerated(0.34) benign(0.003) TCGA-EE-A29M-06 12 40745496 40745496 C T LRRK2 Silent p.L2179L 0.24 TCGA-EE-A29M-06 12 41967699 41967699 G A PDZRN4 3'UTR 0.27 TCGA-EE-A29M-06 12 43822170 43822170 G A ADAMTS20 Silent p.S1273S 0.27 TCGA-EE-A29M-06 12 43860513 43860513 G A ADAMTS20 Missense_Mutation p.H437Y 0.21 tolerated(0.91) benign(0.17) TCGA-EE-A29M-06 12 44124202 44124202 C T PUS7L Missense_Mutation p.E695K 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 44193204 44193204 A T TWF1 Missense_Mutation p.N160K 0.19 tolerated(0.18) benign(0.003) TCGA-EE-A29M-06 12 44915951 44915951 G A NELL2 Silent p.F719F 0.28 TCGA-EE-A29M-06 12 45417530 45417530 C T DBX2 Missense_Mutation p.R216Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 4553315 4553315 C T FGF6 Missense_Mutation p.G145E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 46591825 46591825 C T SLC38A1 Missense_Mutation p.E381K 0.27 tolerated(0.06) possibly_damaging(0.883) TCGA-EE-A29M-06 12 47182399 47182399 T C SLC38A4 Missense_Mutation p.Q41R 0.31 tolerated(0.24) benign(0.005) TCGA-EE-A29M-06 12 47629093 47629093 C G PCED1B Missense_Mutation p.R83G 0.22 tolerated(0.22) benign(0.125) TCGA-EE-A29M-06 12 48135257 48135257 C T RAPGEF3 Intron 0.26 TCGA-EE-A29M-06 12 48393853 48393853 C T COL2A1 Nonsense_Mutation p.W47* 0.30 TCGA-EE-A29M-06 12 48962901 48962901 G A LALBA Missense_Mutation p.P86S 0.22 tolerated(0.09) benign(0.031) TCGA-EE-A29M-06 12 49424442 49424442 G A KMT2D Missense_Mutation p.A4594V 0.33 unknown(0) TCGA-EE-A29M-06 12 49424543 49424543 G A KMT2D Silent p.S4560S 0.27 TCGA-EE-A29M-06 12 49521730 49521730 G A TUBA1B 3'UTR 0.23 TCGA-EE-A29M-06 12 50036918 50036918 G A FMNL3 3'UTR 0.26 TCGA-EE-A29M-06 12 50189510 50189510 G A NCKAP5L Silent p.S711S 0.15 TCGA-EE-A29M-06 12 50284486 50284486 G A FAIM2 Silent p.L169L 0.19 TCGA-EE-A29M-06 12 50369372 50369372 G A AQP6 Missense_Mutation p.G256E 0.26 tolerated(1) benign(0) TCGA-EE-A29M-06 12 51685437 51685437 C T BIN2 Missense_Mutation p.E485K 0.28 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-EE-A29M-06 12 51751178 51751178 C T GALNT6 Silent p.G519G 0.35 TCGA-EE-A29M-06 12 51851189 51851189 T - SLC4A8 Frame_Shift_Del p.V212Cfs*39 0.22 TCGA-EE-A29M-06 12 52309284 52309284 G A ACVRL1 Missense_Mutation p.G350S 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A29M-06 12 52451274 52451274 C T NR4A1 Silent p.V513V 0.29 TCGA-EE-A29M-06 12 52827812 52827812 C T KRT75 Missense_Mutation p.G93R 0.27 deleterious(0.02) benign(0.015) TCGA-EE-A29M-06 12 52827960 52827960 C T KRT75 Silent p.G43G 0.23 TCGA-EE-A29M-06 12 52827961 52827961 C T KRT75 Missense_Mutation p.G43E 0.23 deleterious(0.02) possibly_damaging(0.489) TCGA-EE-A29M-06 12 52863587 52863587 C T KRT6C Missense_Mutation p.E431K 0.30 deleterious(0.02) possibly_damaging(0.773) TCGA-EE-A29M-06 12 52908780 52908780 G A KRT5 Silent p.S573S 0.29 TCGA-EE-A29M-06 12 52911738 52911738 C T KRT5 Silent p.E290E 0.26 TCGA-EE-A29M-06 12 52943127 52943127 C T KRT71 Missense_Mutation p.E223K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 53038983 53038983 C T KRT2 Silent p.K580K 0.27 TCGA-EE-A29M-06 12 53189737 53189737 G A KRT3 Silent p.S30S 0.26 TCGA-EE-A29M-06 12 53200993 53200993 C T KRT4 Missense_Mutation p.G475R 0.32 deleterious(0.05) unknown(0) TCGA-EE-A29M-06 12 53207631 53207631 C T KRT4 Missense_Mutation p.G71D 0.27 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A29M-06 12 53237949 53237949 C T KRT78 Silent p.T325T 0.27 TCGA-EE-A29M-06 12 53818100 53818100 C T AMHR2 Silent p.F26F 0.24 TCGA-EE-A29M-06 12 54383251 54383251 C T HOXC10 3'UTR 0.33 TCGA-EE-A29M-06 12 54969363 54969363 C A PDE1B Missense_Mutation p.P405H 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 54969364 54969364 C T PDE1B Silent p.P405P 0.21 TCGA-EE-A29M-06 12 55026969 55026969 C T LACRT Missense_Mutation p.G36E 0.24 tolerated_low_confidence(0.73) probably_damaging(0.969) TCGA-EE-A29M-06 12 55714733 55714733 C T OR6C1 Missense_Mutation p.S117F 0.27 deleterious_low_confidence(0.01) benign(0.216) TCGA-EE-A29M-06 12 55715093 55715093 C T OR6C1 Missense_Mutation p.S237F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EE-A29M-06 12 55725661 55725661 C T OR6C3 Silent p.F59F 0.22 TCGA-EE-A29M-06 12 55863714 55863714 G A OR6C70 Missense_Mutation p.S70L 0.29 tolerated_low_confidence(0.15) benign(0.005) TCGA-EE-A29M-06 12 56090706 56090706 C T ITGA7 Missense_Mutation p.G576R 0.26 tolerated(0.34) benign(0.337) TCGA-EE-A29M-06 12 56428559 56428559 C T IKZF4 Missense_Mutation p.S401F 0.22 deleterious(0) probably_damaging(0.97) TCGA-EE-A29M-06 12 56631577 56631577 G A SLC39A5 3'UTR 0.33 TCGA-EE-A29M-06 12 56708936 56708936 C T CNPY2 Silent p.R22R 0.28 TCGA-EE-A29M-06 12 5685149 5685149 G A ANO2 Silent p.I824I 0.19 TCGA-EE-A29M-06 12 56998046 56998046 G A BAZ2A Missense_Mutation p.S1000F 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 12 57348914 57348914 G A RDH16 Silent p.S116S 0.22 TCGA-EE-A29M-06 12 57348915 57348915 G A RDH16 Missense_Mutation p.S116F 0.23 tolerated(0.52) benign(0.013) TCGA-EE-A29M-06 12 57430834 57430834 C T MYO1A Silent p.Q699Q 0.23 TCGA-EE-A29M-06 12 57442065 57442065 G A MYO1A Missense_Mutation p.L15F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 57561243 57561243 C T LRP1 Silent p.F977F 0.28 TCGA-EE-A29M-06 12 57572248 57572248 G A LRP1 Missense_Mutation p.E1490K 0.21 probably_damaging(0.993) TCGA-EE-A29M-06 12 57629204 57629204 C T NDUFA4L2 3'UTR 0.23 TCGA-EE-A29M-06 12 57843707 57843707 G A INHBC Missense_Mutation p.A321T 0.25 tolerated(0.5) benign(0.049) TCGA-EE-A29M-06 12 57872935 57872935 C T ARHGAP9 Silent p.E85E 0.29 TCGA-EE-A29M-06 12 58001367 58001367 C T DTX3 Nonsense_Mutation p.Q241* 0.24 TCGA-EE-A29M-06 12 58125379 58125379 C T AGAP2 Missense_Mutation p.G667E 0.23 deleterious(0) probably_damaging(0.943) TCGA-EE-A29M-06 12 5853361 5853361 G A ANO2 Missense_Mutation p.P434L 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29M-06 12 5860133 5860133 C T ANO2 Silent p.K349K 0.17 TCGA-EE-A29M-06 12 59268347 59268347 G A LRIG3 Missense_Mutation p.H902Y 0.21 tolerated(0.45) benign(0.003) TCGA-EE-A29M-06 12 6128845 6128845 G A VWF Missense_Mutation p.P1247S 0.30 tolerated(0.07) possibly_damaging(0.857) TCGA-EE-A29M-06 12 6204750 6204750 C T VWF Missense_Mutation p.G178E 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29M-06 12 62929435 62929435 C T MON2 Missense_Mutation p.H616Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-EE-A29M-06 12 65857159 65857159 C T MSRB3 3'UTR 0.29 TCGA-EE-A29M-06 12 659062 659062 G A B4GALNT3 Silent p.R327R 0.35 TCGA-EE-A29M-06 12 662505 662505 C T B4GALNT3 Silent p.L472L 0.21 TCGA-EE-A29M-06 12 66838419 66838419 G A GRIP1 Silent p.L492L 0.34 TCGA-EE-A29M-06 12 66911703 66911703 G A GRIP1 Missense_Mutation p.R186C 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 12 6782498 6782498 G A ZNF384 Silent p.F265F 0.22 TCGA-EE-A29M-06 12 6840215 6840215 C T COPS7A 3'UTR 0.36 TCGA-EE-A29M-06 12 6923361 6923361 G A CD4 Missense_Mutation p.G90R 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 12 69264143 69264143 G A CPM Silent p.F156F 0.22 TCGA-EE-A29M-06 12 7030875 7030875 G A ENO2 Missense_Mutation p.E333K 0.30 tolerated_low_confidence(0.13) benign(0.03) TCGA-EE-A29M-06 12 7032104 7032104 C T ENO2 3'UTR 0.36 TCGA-EE-A29M-06 12 70704717 70704717 G A CNOT2 Missense_Mutation p.E31K 0.24 deleterious_low_confidence(0.01) benign(0.115) TCGA-EE-A29M-06 12 71526560 71526560 A C TSPAN8 Missense_Mutation p.N163K 0.40 tolerated(0.76) benign(0.034) TCGA-EE-A29M-06 12 71977622 71977622 C T LGR5 Missense_Mutation p.A611V 0.22 deleterious(0) benign(0.082) TCGA-EE-A29M-06 12 72050882 72050882 G A ZFC3H1 Silent p.F266F 0.29 TCGA-EE-A29M-06 12 73015504 73015504 C T TRHDE Missense_Mutation p.S838L 0.11 tolerated(0.08) possibly_damaging(0.87) TCGA-EE-A29M-06 12 7303615 7303615 C T CLSTN3 Missense_Mutation p.P828L 0.29 tolerated(0.49) benign(0.002) TCGA-EE-A29M-06 12 7531787 7531787 C T CD163L1 Missense_Mutation p.G720R 0.23 tolerated(0.19) benign(0.049) TCGA-EE-A29M-06 12 75683520 75683520 G A CAPS2 Missense_Mutation p.R445C 0.20 deleterious(0) probably_damaging(0.977) TCGA-EE-A29M-06 12 75804347 75804347 G A GLIPR1L2 Missense_Mutation p.G123D 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 12 7633767 7633767 C T CD163 Missense_Mutation p.M1111I 0.25 tolerated(0.21) benign(0) TCGA-EE-A29M-06 12 7639526 7639526 G A CD163 Missense_Mutation p.P703S 0.32 tolerated(1) benign(0.002) TCGA-EE-A29M-06 12 7649613 7649613 C T CD163 Missense_Mutation p.D299N 0.38 tolerated(0.14) benign(0.243) TCGA-EE-A29M-06 12 78598733 78598733 C T NAV3 Missense_Mutation p.P2263S 0.13 tolerated(0.21) benign(0.406) TCGA-EE-A29M-06 12 79679694 79679694 G A SYT1 Silent p.G98G 0.24 TCGA-EE-A29M-06 12 8050890 8050890 G A NANOGP1 RNA 0.32 TCGA-EE-A29M-06 12 81660787 81660787 G A PPFIA2 Missense_Mutation p.L1167F 0.19 deleterious(0.01) benign(0.17) TCGA-EE-A29M-06 12 83251033 83251033 C T TMTC2 Missense_Mutation p.L110F 0.22 tolerated(0.29) benign(0.11) TCGA-EE-A29M-06 12 86199465 86199465 G A RASSF9 Missense_Mutation p.P108L 0.24 deleterious(0.02) benign(0.197) TCGA-EE-A29M-06 12 86276074 86276074 C T NTS Missense_Mutation p.P145L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 12 8630024 8630024 G A CLEC6A Silent p.R198R 0.20 TCGA-EE-A29M-06 12 8630109 8630109 C T CLEC6A 3'UTR 0.29 TCGA-EE-A29M-06 12 8687268 8687268 C T CLEC4E Missense_Mutation p.G209E 0.26 tolerated(0.79) benign(0) TCGA-EE-A29M-06 12 8688801 8688801 C T CLEC4E Missense_Mutation p.E125K 0.32 tolerated(0.11) benign(0.124) TCGA-EE-A29M-06 12 88390364 88390364 C T C12orf50 Missense_Mutation p.E117K 0.25 deleterious(0) possibly_damaging(0.631) TCGA-EE-A29M-06 12 91363872 91363872 C T EPYC Silent p.L249L 0.27 TCGA-EE-A29M-06 12 93221822 93221822 G A EEA1 Silent p.L424L 0.22 TCGA-EE-A29M-06 12 96181211 96181211 C T NTN4 Missense_Mutation p.E31K 0.23 tolerated(0.1) possibly_damaging(0.735) TCGA-EE-A29M-06 12 96379924 96379924 G A HAL Nonsense_Mutation p.R356* 0.33 TCGA-EE-A29M-06 12 97051840 97051840 G A C12orf55 Missense_Mutation p.E1761K 0.22 deleterious(0) benign(0.33) TCGA-EE-A29M-06 12 99223110 99223110 G A ANKS1B Missense_Mutation p.P970S 0.20 tolerated(0.83) possibly_damaging(0.893) TCGA-EE-A29M-06 12 99478707 99478707 G A ANKS1B Missense_Mutation p.P874L 0.25 deleterious(0) probably_damaging(0.973) TCGA-EE-A29M-06 13 100511124 100511124 C T CLYBL Nonsense_Mutation p.R87* 0.58 TCGA-EE-A29M-06 13 100634891 100634891 G A ZIC2 Silent p.S191S 0.59 TCGA-EE-A29M-06 13 101287406 101287406 G A TMTC4 Missense_Mutation p.P416S 0.57 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29M-06 13 101755619 101755619 G A NALCN Silent p.V987V 0.63 TCGA-EE-A29M-06 13 103698365 103698365 G A SLC10A2 3'UTR 0.79 TCGA-EE-A29M-06 13 107823029 107823029 G A FAM155A Missense_Mutation p.S398F 0.69 tolerated(0.13) benign(0.26) TCGA-EE-A29M-06 13 109704812 109704812 G A MYO16 Missense_Mutation p.E991K 0.62 tolerated(0.06) possibly_damaging(0.902) TCGA-EE-A29M-06 13 111138100 111138100 C G COL4A2 Missense_Mutation p.P1042A 0.54 possibly_damaging(0.822) TCGA-EE-A29M-06 13 111287172 111287172 G A CARKD Intron 0.53 TCGA-EE-A29M-06 13 113181779 113181779 G A TUBGCP3 Missense_Mutation p.P452L 0.59 tolerated(0.3) benign(0.024) TCGA-EE-A29M-06 13 113783846 113783846 G A F10 Missense_Mutation p.G51R 0.66 deleterious(0) probably_damaging(0.987) TCGA-EE-A29M-06 13 114322087 114322087 G A GRK1 Missense_Mutation p.G129E 0.51 tolerated(0.89) benign(0.008) TCGA-EE-A29M-06 13 20067628 20067628 C T TPTE2 Missense_Mutation p.E9K 0.39 deleterious_low_confidence(0.01) benign(0.028) TCGA-EE-A29M-06 13 20279916 20279916 C T PSPC1 Missense_Mutation p.M424I 0.18 tolerated(0.42) benign(0.001) TCGA-EE-A29M-06 13 24468280 24468280 C T C1QTNF9B Missense_Mutation p.R76Q 0.13 tolerated(0.49) benign(0.007) TCGA-EE-A29M-06 13 24893016 24893016 G A C1QTNF9 Missense_Mutation p.R76Q 0.16 tolerated(0.18) benign(0.007) TCGA-EE-A29M-06 13 25021321 25021321 C T PARP4 Missense_Mutation p.E1040K 0.11 tolerated(0.05) benign(0.147) TCGA-EE-A29M-06 13 25049660 25049660 G A PARP4 Missense_Mutation p.P622S 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 13 25285740 25285740 C T ATP12A 3'UTR 0.34 TCGA-EE-A29M-06 13 25404622 25404622 G A RNF17 Missense_Mutation p.G749E 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 13 25418018 25418018 T G RNF17 Missense_Mutation p.Y914D 0.42 tolerated(0.18) probably_damaging(0.973) TCGA-EE-A29M-06 13 33628096 33628096 C T KL Missense_Mutation p.P338S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 13 37453547 37453547 G A SMAD9 Missense_Mutation p.R94C 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29M-06 13 42773946 42773946 C T DGKH Intron 0.46 TCGA-EE-A29M-06 13 46726977 46726977 C T LCP1 Missense_Mutation p.G226E 0.43 deleterious(0) probably_damaging(0.992) TCGA-EE-A29M-06 13 49073831 49073831 G A RCBTB2 Missense_Mutation p.S437L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 13 53307459 53307459 C T LECT1 Silent p.G83G 0.41 TCGA-EE-A29M-06 13 53422434 53422434 G A PCDH8 Silent p.I46I 0.47 TCGA-EE-A29M-06 13 67800395 67800395 G A PCDH9 Silent p.F726F 0.39 TCGA-EE-A29M-06 13 74569125 74569125 A G KLF12 Splice_Site p.X11_splice 0.24 TCGA-EE-A29M-06 13 78191759 78191759 A T SCEL Nonsense_Mutation p.K493* 0.22 TCGA-EE-A29M-06 13 84453891 84453891 C T SLITRK1 Silent p.R584R 0.37 TCGA-EE-A29M-06 13 92345744 92345744 G A GPC5 Missense_Mutation p.R210K 0.39 tolerated(0.97) benign(0.023) TCGA-EE-A29M-06 13 99118722 99118722 T A STK24 Missense_Mutation p.I243F 0.65 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 100188396 100188396 C T CYP46A1 Missense_Mutation p.P390L 0.30 tolerated(0.19) probably_damaging(0.931) TCGA-EE-A29M-06 14 100795908 100795908 G A SLC25A47 Missense_Mutation p.A285T 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 101201152 101201152 G A DLK1 Silent p.E357E 0.27 TCGA-EE-A29M-06 14 101335434 101335434 C T MIR493 RNA 0.26 TCGA-EE-A29M-06 14 101349367 101349367 G A RTL1 Missense_Mutation p.L587F 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 14 101423559 101423559 G A SNORD114-6 RNA 0.15 TCGA-EE-A29M-06 14 101530900 101530900 C T MIR541 RNA 0.26 TCGA-EE-A29M-06 14 102372948 102372948 C T PPP2R5C Intron 0.25 TCGA-EE-A29M-06 14 105414780 105414780 G A AHNAK2 Silent p.S2336S 0.24 TCGA-EE-A29M-06 14 105612287 105612287 A G JAG2 Silent p.C911C 0.25 TCGA-EE-A29M-06 14 105615171 105615171 G A JAG2 Missense_Mutation p.P644L 0.22 deleterious(0) possibly_damaging(0.872) TCGA-EE-A29M-06 14 106204123 106204123 C T IGHG1 Silent p.R392R 0.19 TCGA-EE-A29M-06 14 106236177 106236177 C A IGHG3 Missense_Mutation p.D210Y 0.27 deleterious(0) possibly_damaging(0.688) TCGA-EE-A29M-06 14 106321847 106321847 C T IGHM Silent p.K129K 0.29 TCGA-EE-A29M-06 14 106725369 106725369 C T IGHV3-23 Silent p.G61G 0.19 TCGA-EE-A29M-06 14 106791110 106791110 G A IGHV3-30 Silent p.S82S 0.18 TCGA-EE-A29M-06 14 106805291 106805291 G A IGHV4-31 Missense_Mutation p.S91L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-EE-A29M-06 14 106926596 106926596 C T IGHV3-43 Intron 0.18 TCGA-EE-A29M-06 14 106967099 106967099 C T IGHV1-46 Missense_Mutation p.E101K 0.28 deleterious(0) benign(0.213) TCGA-EE-A29M-06 14 107170360 107170360 C T IGHV1-69 Nonsense_Mutation p.W3* 0.23 TCGA-EE-A29M-06 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.08 tolerated(0.06) benign(0.055) TCGA-EE-A29M-06 14 20215606 20215606 C T OR4Q3 Missense_Mutation p.S7F 0.21 deleterious(0) possibly_damaging(0.694) TCGA-EE-A29M-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.20 deleterious(0) possibly_damaging(0.659) TCGA-EE-A29M-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.20 deleterious(0.01) benign(0.048) TCGA-EE-A29M-06 14 20296446 20296446 C T OR4N2 Missense_Mutation p.P280L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 20344521 20344521 C T OR4K2 Missense_Mutation p.S32L 0.15 tolerated(0.13) benign(0.049) TCGA-EE-A29M-06 14 20345023 20345023 G A OR4K2 Missense_Mutation p.M199I 0.20 tolerated(0.6) probably_damaging(0.998) TCGA-EE-A29M-06 14 20388940 20388940 A T OR4K5 Missense_Mutation p.M59L 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29M-06 14 20389381 20389381 C T OR4K5 Missense_Mutation p.L206F 0.14 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 14 20404190 20404190 G A OR4K1 Missense_Mutation p.R122K 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A29M-06 14 20483307 20483307 C T OR4K14 Missense_Mutation p.G16R 0.25 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 14 20502846 20502846 C T OR4K13 Silent p.Q24Q 0.28 TCGA-EE-A29M-06 14 20692828 20692828 G A OR11H6 Silent p.K320K 0.25 TCGA-EE-A29M-06 14 21025008 21025008 C T RNASE9 Missense_Mutation p.G79E 0.23 tolerated(0.9) benign(0.058) TCGA-EE-A29M-06 14 21109809 21109809 G A OR6S1 Silent p.F14F 0.28 TCGA-EE-A29M-06 14 21862454 21862454 G A CHD8 Missense_Mutation p.P1861S 0.23 tolerated(0.05) possibly_damaging(0.628) TCGA-EE-A29M-06 14 21894393 21894393 G A CHD8 Missense_Mutation p.T537I 0.39 tolerated(0.3) probably_damaging(0.991) TCGA-EE-A29M-06 14 21894394 21894394 T G CHD8 Missense_Mutation p.T537P 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29M-06 14 21993631 21993631 G A SALL2 Silent p.A77A 0.34 TCGA-EE-A29M-06 14 22038384 22038384 G A OR10G3 Silent p.T164T 0.25 TCGA-EE-A29M-06 14 22038433 22038433 C T OR10G3 Missense_Mutation p.G148E 0.32 deleterious(0) benign(0.424) TCGA-EE-A29M-06 14 22134220 22134220 C T OR4E2 Silent p.F308F 0.24 TCGA-EE-A29M-06 14 22181016 22181016 C T TRAV2 Silent p.I96I 0.28 TCGA-EE-A29M-06 14 22337516 22337516 G A TRAV13-1 Missense_Mutation p.D103N 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 14 22356519 22356519 A G TRAV12-2 Silent p.Q59Q 0.31 TCGA-EE-A29M-06 14 22433707 22433707 G A TRAV12-3 5'UTR 0.28 TCGA-EE-A29M-06 14 22466152 22466152 C T TRAV17 Missense_Mutation p.P28S 0.15 tolerated(0.48) benign(0.009) TCGA-EE-A29M-06 14 22539320 22539320 G A TRAV22 Nonsense_Mutation p.W60* 0.41 TCGA-EE-A29M-06 14 22554980 22554980 C T TRAV23DV6 Missense_Mutation p.P36S 0.30 tolerated(0.09) benign(0.26) TCGA-EE-A29M-06 14 23079868 23079868 G A ABHD4 3'UTR 0.27 TCGA-EE-A29M-06 14 23282435 23282435 G A SLC7A7 Missense_Mutation p.S58F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 14 23344855 23344855 C T LRP10 Missense_Mutation p.A233V 0.29 tolerated(0.52) benign(0.346) TCGA-EE-A29M-06 14 23344856 23344856 C T LRP10 Silent p.A233A 0.28 TCGA-EE-A29M-06 14 23346485 23346485 C T LRP10 Missense_Mutation p.P631S 0.26 tolerated(0.84) benign(0.01) TCGA-EE-A29M-06 14 23417130 23417130 G A HAUS4 Nonsense_Mutation p.Q219* 0.29 TCGA-EE-A29M-06 14 23794485 23794485 C T BCL2L2-PABPN1 Missense_Mutation p.S331F 0.27 tolerated_low_confidence(0.44) benign(0) TCGA-EE-A29M-06 14 23858111 23858111 C T MYH6 Missense_Mutation p.E1378K 0.25 deleterious(0.01) possibly_damaging(0.9) TCGA-EE-A29M-06 14 23865999 23865999 G A MYH6 Silent p.I732I 0.21 TCGA-EE-A29M-06 14 23896073 23896073 C T MYH7 Missense_Mutation p.E653K 0.25 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A29M-06 14 24529923 24529923 C T LRRC16B Silent p.L716L 0.24 TCGA-EE-A29M-06 14 24706339 24706339 C T GMPR2 Silent p.I194I 0.22 TCGA-EE-A29M-06 14 24843447 24843447 C T NFATC4 Intron 0.25 TCGA-EE-A29M-06 14 24878173 24878173 C T NYNRIN Silent p.P391P 0.27 TCGA-EE-A29M-06 14 24878429 24878429 C T NYNRIN Missense_Mutation p.P477S 0.19 tolerated_low_confidence(0.1) benign(0.011) TCGA-EE-A29M-06 14 24884134 24884134 C T NYNRIN Missense_Mutation p.A1060V 0.28 tolerated_low_confidence(1) benign(0) TCGA-EE-A29M-06 14 24885236 24885236 C T NYNRIN Silent p.I1427I 0.29 TCGA-EE-A29M-06 14 24975306 24975306 G A CMA1 Silent p.S176S 0.28 TCGA-EE-A29M-06 14 25044536 25044536 C T CTSG Silent p.Q46Q 0.25 TCGA-EE-A29M-06 14 30068238 30068238 G A PRKD1 Missense_Mutation p.P721S 0.30 deleterious(0) probably_damaging(0.976) TCGA-EE-A29M-06 14 31354952 31354952 G A COCH Intron 0.29 TCGA-EE-A29M-06 14 31626090 31626090 G A HECTD1 Missense_Mutation p.P630S 0.27 tolerated(0.05) benign(0.062) TCGA-EE-A29M-06 14 35234256 35234256 G A BAZ1A Missense_Mutation p.H1174Y 0.27 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A29M-06 14 37153057 37153057 G A SLC25A21 Missense_Mutation p.P272S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 37344171 37344171 C T SLC25A21 Missense_Mutation p.V37M 0.21 deleterious(0.02) benign(0.378) TCGA-EE-A29M-06 14 39706162 39706162 G C MIA2 Missense_Mutation p.R51T 0.33 tolerated(0.37) benign(0.023) TCGA-EE-A29M-06 14 42360873 42360873 T C LRFN5 Silent p.C602C 0.30 TCGA-EE-A29M-06 14 42373443 42373443 C T LRFN5 3'UTR 0.32 TCGA-EE-A29M-06 14 45369670 45369670 C T C14orf28 Missense_Mutation p.S11L 0.19 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-EE-A29M-06 14 45581633 45581633 C G PRPF39 Missense_Mutation p.P562R 0.16 deleterious(0.03) benign(0.097) TCGA-EE-A29M-06 14 45639814 45639814 G A FANCM Silent p.K675K 0.20 TCGA-EE-A29M-06 14 45711524 45711524 C T MIS18BP1 Missense_Mutation p.E286K 0.30 tolerated(0.23) benign(0.012) TCGA-EE-A29M-06 14 47121027 47121027 C T RPL10L 5'UTR 0.28 TCGA-EE-A29M-06 14 47121028 47121028 C T RPL10L 5'UTR 0.29 TCGA-EE-A29M-06 14 50044456 50044456 G A RPS29 3'UTR 0.30 TCGA-EE-A29M-06 14 50272836 50272836 G C NEMF Missense_Mutation p.P587R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 52485805 52485805 G A NID2 Missense_Mutation p.T1001I 0.27 tolerated(0.08) benign(0.068) TCGA-EE-A29M-06 14 53119019 53119019 G A ERO1L Missense_Mutation p.P355S 0.24 deleterious(0.04) probably_damaging(1) TCGA-EE-A29M-06 14 57749720 57749720 T C AP5M1 Missense_Mutation p.L386S 0.26 deleterious(0.02) benign(0.014) TCGA-EE-A29M-06 14 57957678 57957678 C T C14orf105 Intron 0.29 TCGA-EE-A29M-06 14 58055945 58055945 C T SLC35F4 Missense_Mutation p.M228I 0.38 tolerated(0.43) benign(0.005) TCGA-EE-A29M-06 14 58605247 58605247 G A C14orf37 Missense_Mutation p.S277F 0.41 deleterious(0) possibly_damaging(0.683) TCGA-EE-A29M-06 14 59791096 59791096 C T DAAM1 Missense_Mutation p.R305C 0.25 deleterious(0) unknown(0) TCGA-EE-A29M-06 14 59930377 59930377 A G GPR135 3'UTR 0.21 TCGA-EE-A29M-06 14 59954515 59954515 T C JKAMP Missense_Mutation p.F74L 0.26 tolerated(0.07) benign(0.027) TCGA-EE-A29M-06 14 60903642 60903642 C T C14orf39 Missense_Mutation p.G562D 0.30 tolerated(1) benign(0) TCGA-EE-A29M-06 14 62547948 62547948 G A SYT16 Missense_Mutation p.E464K 0.30 tolerated(0.46) benign(0.034) TCGA-EE-A29M-06 14 64375823 64375823 C T SYNE2 5'UTR 0.34 TCGA-EE-A29M-06 14 64476784 64476784 C T SYNE2 Silent p.L1560L 0.26 TCGA-EE-A29M-06 14 64593101 64593101 C T SYNE2 Silent p.F4537F 0.35 TCGA-EE-A29M-06 14 64988778 64988778 C T ZBTB1 Missense_Mutation p.P186S 0.25 tolerated(0.5) benign(0.03) TCGA-EE-A29M-06 14 65544615 65544615 G A MAX Intron 0.26 TCGA-EE-A29M-06 14 67647551 67647551 T A GPHN Missense_Mutation p.M736K 0.26 deleterious(0) probably_damaging(0.937) TCGA-EE-A29M-06 14 69378929 69378929 A T ACTN1 Missense_Mutation p.L124Q 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 14 69847312 69847312 C T ERH Nonsense_Mutation p.W86* 0.24 TCGA-EE-A29M-06 14 70713587 70713587 C T ADAM21P1 RNA 0.25 TCGA-EE-A29M-06 14 71199749 71199749 G A MAP3K9 Silent p.P793P 0.17 TCGA-EE-A29M-06 14 71443822 71443822 C T PCNX Silent p.S256S 0.31 TCGA-EE-A29M-06 14 72190486 72190486 C T SIPA1L1 Missense_Mutation p.S1465F 0.28 tolerated(0.06) probably_damaging(0.982) TCGA-EE-A29M-06 14 72190579 72190579 C T SIPA1L1 Missense_Mutation p.S1496F 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A29M-06 14 73029177 73029177 C T RGS6 3'UTR 0.22 TCGA-EE-A29M-06 14 73751034 73751034 G A NUMB Missense_Mutation p.T235I 0.31 tolerated(0.1) benign(0.001) TCGA-EE-A29M-06 14 74062020 74062020 C T ACOT4 Missense_Mutation p.P310S 0.25 deleterious(0.02) possibly_damaging(0.732) TCGA-EE-A29M-06 14 74824495 74824495 C G VRTN Missense_Mutation p.Q337E 0.25 tolerated(0.36) probably_damaging(0.98) TCGA-EE-A29M-06 14 74825220 74825220 G A VRTN Silent p.K578K 0.23 TCGA-EE-A29M-06 14 74876109 74876109 C T SYNDIG1L Silent p.E113E 0.26 TCGA-EE-A29M-06 14 75017892 75017892 G A LTBP2 Missense_Mutation p.H521Y 0.21 tolerated(0.45) benign(0.424) TCGA-EE-A29M-06 14 75017893 75017893 G A LTBP2 Silent p.G520G 0.20 TCGA-EE-A29M-06 14 75265731 75265731 G A YLPM1 Missense_Mutation p.R1244K 0.22 possibly_damaging(0.64) TCGA-EE-A29M-06 14 75329636 75329636 C T PROX2 Intron 0.30 TCGA-EE-A29M-06 14 77710755 77710755 C T TMEM63C Silent p.L469L 0.29 TCGA-EE-A29M-06 14 77722995 77722995 G A TMEM63C Missense_Mutation p.G783S 0.29 tolerated(0.69) benign(0.012) TCGA-EE-A29M-06 14 78353448 78353448 C T ADCK1 Silent p.F146F 0.27 TCGA-EE-A29M-06 14 81366325 81366325 G A CEP128 Missense_Mutation p.R177C 0.23 deleterious(0) probably_damaging(0.99) TCGA-EE-A29M-06 14 88448555 88448555 A T GALC Nonsense_Mutation p.Y205* 0.37 TCGA-EE-A29M-06 14 88945806 88945806 G A PTPN21 Silent p.L657L 0.27 TCGA-EE-A29M-06 14 92251508 92251508 G A TC2N Nonsense_Mutation p.Q454* 0.23 TCGA-EE-A29M-06 14 92251509 92251509 G A TC2N Silent p.G453G 0.22 TCGA-EE-A29M-06 14 92625548 92625549 TC - CPSF2 Frame_Shift_Del p.L682Vfs*4 0.17 TCGA-EE-A29M-06 14 92953042 92953042 G A SLC24A4 Silent p.P485P 0.30 TCGA-EE-A29M-06 14 93170593 93170593 C T LGMN 3'UTR 0.21 TCGA-EE-A29M-06 14 93649576 93649576 C T MOAP1 Missense_Mutation p.E338K 0.34 tolerated(0.08) possibly_damaging(0.801) TCGA-EE-A29M-06 14 93814420 93814420 C T COX8C Missense_Mutation p.P58L 0.22 deleterious(0) probably_damaging(0.975) TCGA-EE-A29M-06 14 93962762 93962762 C T UNC79 Missense_Mutation p.H63Y 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29M-06 14 94067104 94067104 C T UNC79 Missense_Mutation p.P1011S 0.24 tolerated(0.36) probably_damaging(0.999) TCGA-EE-A29M-06 14 94089029 94089029 G A UNC79 Missense_Mutation p.R1640K 0.16 tolerated_low_confidence(0.76) benign(0.018) TCGA-EE-A29M-06 14 94394861 94394861 G A FAM181A Missense_Mutation p.R139K 0.30 tolerated(0.93) benign(0) TCGA-EE-A29M-06 14 94395286 94395286 C T FAM181A Missense_Mutation p.H281Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 14 94505434 94505434 G A OTUB2 Intron 0.28 TCGA-EE-A29M-06 14 94718122 94718122 G A PPP4R4 Missense_Mutation p.R585Q 0.28 tolerated(0.2) possibly_damaging(0.906) TCGA-EE-A29M-06 14 94741824 94741824 G A PPP4R4 Missense_Mutation p.G855R 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.448) TCGA-EE-A29M-06 14 94935600 94935600 C T SERPINA9 Missense_Mutation p.G211D 0.25 tolerated(1) benign(0.004) TCGA-EE-A29M-06 14 95030088 95030088 C T SERPINA4 Missense_Mutation p.S90F 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 14 95081394 95081394 G A SERPINA3 Missense_Mutation p.V206I 0.27 tolerated(0.17) benign(0.195) TCGA-EE-A29M-06 14 96137710 96137710 C T TCL6 RNA 0.26 TCGA-EE-A29M-06 14 99183489 99183489 G A C14orf177 Missense_Mutation p.E86K 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-EE-A29M-06 14 99641457 99641457 C T BCL11B Silent p.G572G 0.21 TCGA-EE-A29M-06 15 100332594 100332594 C T AC090825.1 3'Flank 0.29 TCGA-EE-A29M-06 15 100514720 100514720 G A ADAMTS17 Missense_Mutation p.R1059W 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 15 101933554 101933554 C T PCSK6 Missense_Mutation p.D357N 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 15 20588503 20588503 G A HERC2P3 RNA 0.15 TCGA-EE-A29M-06 15 20874833 20874833 G A NBEAP1 RNA 0.10 TCGA-EE-A29M-06 15 22368579 22368579 G A OR4M2 Missense_Mutation p.E2K 0.19 tolerated(0.18) benign(0.02) TCGA-EE-A29M-06 15 22709708 22709708 G A AC116165.1 5'Flank 0.28 TCGA-EE-A29M-06 15 22864315 22864315 T C TUBGCP5 Missense_Mutation p.L758P 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 15 23932166 23932166 G A NDN Missense_Mutation p.P67S 0.30 tolerated(0.09) benign(0.054) TCGA-EE-A29M-06 15 24921299 24921299 G A NPAP1 Silent p.R95R 0.26 TCGA-EE-A29M-06 15 24921462 24921462 G A NPAP1 Missense_Mutation p.E150K 0.28 deleterious(0.04) probably_damaging(0.93) TCGA-EE-A29M-06 15 24923385 24923385 G A NPAP1 Missense_Mutation p.D791N 0.27 tolerated_low_confidence(0.59) benign(0.068) TCGA-EE-A29M-06 15 25219449 25219449 C T SNRPN Intron 0.26 TCGA-EE-A29M-06 15 25227242 25227242 C T SNRPN 3'Flank 0.27 TCGA-EE-A29M-06 15 25325343 25325343 G A SNORD116-14 RNA 0.27 TCGA-EE-A29M-06 15 25427609 25427609 G A SNORD115-6 3'Flank 0.29 TCGA-EE-A29M-06 15 25453081 25453081 G A SNORD115-22 5'Flank 0.30 TCGA-EE-A29M-06 15 25458723 25458723 C T SNORD115-22 3'Flank 0.24 TCGA-EE-A29M-06 15 28096618 28096618 G A OCA2 Missense_Mutation p.P750S 0.24 deleterious(0.03) possibly_damaging(0.904) TCGA-EE-A29M-06 15 28420712 28420712 G A HERC2 Silent p.I3259I 0.34 TCGA-EE-A29M-06 15 28458946 28458946 G A HERC2 Missense_Mutation p.T2243I 0.19 benign(0.164) TCGA-EE-A29M-06 15 28600110 28600110 C T RP11-483E23.2 RNA 0.14 TCGA-EE-A29M-06 15 31196961 31196961 C T FAN1 Missense_Mutation p.S32L 0.30 tolerated(0.12) benign(0.039) TCGA-EE-A29M-06 15 32926166 32926166 C T ARHGAP11A Missense_Mutation p.P423L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 15 33928595 33928595 G A RYR3 Missense_Mutation p.G1134R 0.27 probably_damaging(1) TCGA-EE-A29M-06 15 33988477 33988477 C T RYR3 Silent p.I1973I 0.21 TCGA-EE-A29M-06 15 34015064 34015064 C T RYR3 Silent p.L2256L 0.26 TCGA-EE-A29M-06 15 34137075 34137075 C T RYR3 Missense_Mutation p.P4437S 0.26 benign(0.007) TCGA-EE-A29M-06 15 34356466 34356466 G A CHRM5 Silent p.K516K 0.18 TCGA-EE-A29M-06 15 34546760 34546760 G A SLC12A6 Missense_Mutation p.H303Y 0.31 tolerated(0.95) benign(0.002) TCGA-EE-A29M-06 15 34645943 34645943 G A NUTM1 Missense_Mutation p.M287I 0.20 tolerated(0.14) probably_damaging(0.925) TCGA-EE-A29M-06 15 34652410 34652410 C T LPCAT4 Missense_Mutation p.D382N 0.30 tolerated(0.34) probably_damaging(0.998) TCGA-EE-A29M-06 15 35085666 35085666 G A ACTC1 Silent p.I78I 0.28 TCGA-EE-A29M-06 15 35742939 35742939 C T DPH6 Missense_Mutation p.R151K 0.27 tolerated(0.65) benign(0.002) TCGA-EE-A29M-06 15 37329079 37329079 T C MEIS2 Missense_Mutation p.K279R 0.28 deleterious(0) probably_damaging(0.973) TCGA-EE-A29M-06 15 39881440 39881440 G A THBS1 Missense_Mutation p.G604E 0.32 tolerated(0.18) possibly_damaging(0.842) TCGA-EE-A29M-06 15 40710397 40710397 G A IVD Missense_Mutation p.G406R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 15 40710429 40710429 C T IVD Silent p.V416V 0.24 TCGA-EE-A29M-06 15 40750911 40750911 C T BAHD1 Missense_Mutation p.P83L 0.22 tolerated(0.05) probably_damaging(0.933) TCGA-EE-A29M-06 15 42113890 42113890 C T MAPKBP1 Missense_Mutation p.P949S 0.31 tolerated(0.28) benign(0.007) TCGA-EE-A29M-06 15 42114441 42114441 C T MAPKBP1 Missense_Mutation p.P1023L 0.25 tolerated(0.06) probably_damaging(0.945) TCGA-EE-A29M-06 15 42302335 42302335 C T PLA2G4E Intron 0.32 TCGA-EE-A29M-06 15 42374582 42374582 G A PLA2G4D Silent p.S226S 0.32 TCGA-EE-A29M-06 15 42438057 42438057 C T PLA2G4F Missense_Mutation p.G527R 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 15 43339380 43339380 G A UBR1 Silent p.F549F 0.28 TCGA-EE-A29M-06 15 43574732 43574732 G A TGM7 Missense_Mutation p.P364L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 15 43670060 43670060 C T TUBGCP4 Missense_Mutation p.P134S 0.23 deleterious(0.03) benign(0.142) TCGA-EE-A29M-06 15 43749146 43749146 C T TP53BP1 Missense_Mutation p.E554K 0.30 deleterious(0.02) possibly_damaging(0.888) TCGA-EE-A29M-06 15 43816735 43816735 C T MAP1A Nonsense_Mutation p.Q1022* 0.23 TCGA-EE-A29M-06 15 43820746 43820746 G A MAP1A Missense_Mutation p.A2359T 0.22 benign(0.008) TCGA-EE-A29M-06 15 44887479 44887479 C T SPG11 Missense_Mutation p.R1538K 0.23 tolerated(0.15) possibly_damaging(0.87) TCGA-EE-A29M-06 15 45409340 45409340 C T DUOXA2 Silent p.A202A 0.26 TCGA-EE-A29M-06 15 45440472 45440472 C T DUOX1 Missense_Mutation p.S882F 0.25 deleterious(0) probably_damaging(0.948) TCGA-EE-A29M-06 15 45974710 45974710 C T SQRDL Missense_Mutation p.P300L 0.29 deleterious(0) possibly_damaging(0.788) TCGA-EE-A29M-06 15 48064001 48064001 C T SEMA6D 3'UTR 0.35 TCGA-EE-A29M-06 15 48537004 48537004 G A SLC12A1 Missense_Mutation p.G452E 0.21 tolerated(0.24) possibly_damaging(0.606) TCGA-EE-A29M-06 15 48738928 48738928 G A FBN1 Silent p.I1921I 0.33 TCGA-EE-A29M-06 15 49869031 49869031 G A FAM227B Silent p.F151F 0.28 TCGA-EE-A29M-06 15 50190413 50190413 G A ATP8B4 Silent p.L775L 0.18 TCGA-EE-A29M-06 15 50215645 50215645 A C ATP8B4 Missense_Mutation p.D563E 0.26 deleterious(0) possibly_damaging(0.676) TCGA-EE-A29M-06 15 50546362 50546362 C T HDC Missense_Mutation p.E229K 0.29 tolerated(0.21) benign(0.005) TCGA-EE-A29M-06 15 50886692 50886692 G A TRPM7 Missense_Mutation p.H1137Y 0.27 tolerated(0.07) benign(0.025) TCGA-EE-A29M-06 15 51285609 51285609 G A AP4E1 Silent p.G711G 0.36 TCGA-EE-A29M-06 15 51741329 51741329 G A DMXL2 Missense_Mutation p.S2989F 0.21 deleterious(0) probably_damaging(0.947) TCGA-EE-A29M-06 15 52194155 52194155 C T TMOD3 Missense_Mutation p.L316F 0.31 deleterious(0) possibly_damaging(0.853) TCGA-EE-A29M-06 15 52536728 52536728 A T MYO5C Missense_Mutation p.F739I 0.33 deleterious(0) probably_damaging(0.986) TCGA-EE-A29M-06 15 52567770 52567770 G A MYO5C Missense_Mutation p.P199S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 15 52892383 52892383 G A FAM214A Missense_Mutation p.P864S 0.33 tolerated(0.25) possibly_damaging(0.493) TCGA-EE-A29M-06 15 53907716 53907716 C T WDR72 Missense_Mutation p.R896Q 0.27 tolerated(1) benign(0) TCGA-EE-A29M-06 15 54306718 54306718 G A UNC13C Missense_Mutation p.D540N 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A29M-06 15 54841850 54841850 C T UNC13C Silent p.F1946F 0.25 TCGA-EE-A29M-06 15 57731026 57731026 C T CGNL1 Missense_Mutation p.P277S 0.32 deleterious(0.02) possibly_damaging(0.601) TCGA-EE-A29M-06 15 58830616 58830616 C T LIPC Missense_Mutation p.T58I 0.27 tolerated(0.17) benign(0.099) TCGA-EE-A29M-06 15 62985100 62985100 C T TLN2 Missense_Mutation p.S392F 0.29 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A29M-06 15 63904618 63904618 G A HERC1 Silent p.Y4744Y 0.23 TCGA-EE-A29M-06 15 63954088 63954088 G C HERC1 Missense_Mutation p.R3012G 0.26 probably_damaging(0.994) TCGA-EE-A29M-06 15 65370276 65370276 G A KBTBD13 Missense_Mutation p.A375T 0.28 tolerated(1) benign(0.001) TCGA-EE-A29M-06 15 65621279 65621279 G A IGDCC3 Missense_Mutation p.R805W 0.28 deleterious_low_confidence(0.03) benign(0.001) TCGA-EE-A29M-06 15 65621280 65621280 G A IGDCC3 Silent p.A804A 0.28 TCGA-EE-A29M-06 15 66777515 66777515 G A MAP2K1 Missense_Mutation p.G294E 0.28 tolerated(0.1) benign(0.158) TCGA-EE-A29M-06 15 67664823 67664823 C T IQCH Silent p.I376I 0.29 TCGA-EE-A29M-06 15 69561416 69561416 C T GLCE Missense_Mutation p.R563C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 15 71535268 71535268 C T THSD4 Missense_Mutation p.H249Y 0.21 tolerated(0.07) benign(0.007) TCGA-EE-A29M-06 15 72643413 72643413 G A HEXA Intron 0.21 TCGA-EE-A29M-06 15 73418859 73418859 C T NEO1 Missense_Mutation p.P276S 0.27 deleterious(0) probably_damaging(0.977) TCGA-EE-A29M-06 15 74238784 74238784 A T LOXL1 Missense_Mutation p.D413V 0.21 deleterious(0) possibly_damaging(0.598) TCGA-EE-A29M-06 15 74240205 74240205 G A LOXL1 Missense_Mutation p.D522N 0.21 deleterious(0) probably_damaging(0.949) TCGA-EE-A29M-06 15 74468381 74468381 G A ISLR Silent p.G394G 0.26 TCGA-EE-A29M-06 15 74487828 74487828 A G STRA6 Intron 0.29 TCGA-EE-A29M-06 15 74487829 74487829 G A STRA6 Intron 0.28 TCGA-EE-A29M-06 15 74622634 74622634 C T CCDC33 Silent p.S465S 0.27 TCGA-EE-A29M-06 15 74865502 74865502 G A ARID3B Silent p.R218R 0.23 TCGA-EE-A29M-06 15 75014041 75014041 G A CYP1A1 Silent p.I281I 0.27 TCGA-EE-A29M-06 15 75122657 75122657 G A CPLX3 Missense_Mutation p.D147N 0.27 deleterious(0.04) benign(0.002) TCGA-EE-A29M-06 15 75309050 75309050 T G SCAMP5 Missense_Mutation p.S85A 0.24 tolerated(0.3) probably_damaging(0.996) TCGA-EE-A29M-06 15 75499767 75499767 C T C15orf39 Missense_Mutation p.P460S 0.27 tolerated(0.19) benign(0) TCGA-EE-A29M-06 15 75890763 75890763 G A SNUPN Missense_Mutation p.S340F 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29M-06 15 77425473 77425473 G A PEAK1 Silent p.L1317L 0.24 TCGA-EE-A29M-06 15 78526761 78526761 C T ACSBG1 Missense_Mutation p.S28N 0.30 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A29M-06 15 81593826 81593826 G A IL16 Silent p.V1097V 0.28 TCGA-EE-A29M-06 15 81665050 81665050 C T TMC3 Missense_Mutation p.E40K 0.27 tolerated(0.06) benign(0.178) TCGA-EE-A29M-06 15 83333168 83333168 C T AP3B2 Missense_Mutation p.D719N 0.28 tolerated(0.25) possibly_damaging(0.555) TCGA-EE-A29M-06 15 83335593 83335593 G A AP3B2 Silent p.I586I 0.32 TCGA-EE-A29M-06 15 83544044 83544044 G A HOMER2 Missense_Mutation p.S92F 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A29M-06 15 83826195 83826195 G A HDGFRP3 Missense_Mutation p.S144L 0.25 tolerated(0.77) benign(0.017) TCGA-EE-A29M-06 15 84245353 84245353 G A SH3GL3 Missense_Mutation p.E162K 0.43 tolerated(0.12) probably_damaging(0.914) TCGA-EE-A29M-06 15 85438352 85438352 G A SLC28A1 Silent p.K153K 0.29 TCGA-EE-A29M-06 15 85447433 85447433 C T SLC28A1 Silent p.V189V 0.24 TCGA-EE-A29M-06 15 87066088 87066088 C T AGBL1 Missense_Mutation p.S822F 0.30 tolerated(0.25) benign(0.396) TCGA-EE-A29M-06 15 87089343 87089343 C T AGBL1 Silent p.I886I 0.23 TCGA-EE-A29M-06 15 88420186 88420186 A T NTRK3 Missense_Mutation p.Y834N 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 15 88522649 88522649 G A NTRK3 Intron 0.28 TCGA-EE-A29M-06 15 89056206 89056206 G A DET1 Silent p.F554F 0.26 TCGA-EE-A29M-06 15 89151363 89151363 C T MIR1179 RNA 0.31 TCGA-EE-A29M-06 15 89736470 89736470 A C ABHD2 Missense_Mutation p.Y334S 0.34 tolerated(0.75) benign(0) TCGA-EE-A29M-06 15 89848400 89848400 C T FANCI Missense_Mutation p.S1038L 0.34 tolerated(1) benign(0) TCGA-EE-A29M-06 15 90171865 90171865 A T KIF7 Missense_Mutation p.L1273I 0.32 deleterious(0.03) probably_damaging(0.913) TCGA-EE-A29M-06 15 90171866 90171866 C T KIF7 Silent p.P1272P 0.33 TCGA-EE-A29M-06 15 90185521 90185521 G A KIF7 Silent p.L769L 0.26 TCGA-EE-A29M-06 15 90892213 90892213 C T GABARAPL3 Missense_Mutation p.E73K 0.26 deleterious(0.01) benign(0.442) TCGA-EE-A29M-06 15 91803600 91803600 C T SV2B Silent p.T323T 0.26 TCGA-EE-A29M-06 15 99670730 99670730 C A SYNM Missense_Mutation p.A721D 0.30 deleterious(0) probably_damaging(0.951) TCGA-EE-A29M-06 15 99670731 99670731 C T SYNM Silent p.A721A 0.30 TCGA-EE-A29M-06 15 99672295 99672295 G A SYNM Missense_Mutation p.G1243R 0.29 tolerated(0.56) probably_damaging(0.943) TCGA-EE-A29M-06 16 10273956 10273956 C T GRIN2A Missense_Mutation p.D105N 0.15 tolerated(0.18) probably_damaging(0.988) TCGA-EE-A29M-06 16 11363116 11363116 C T TNP2 Missense_Mutation p.D2N 0.19 deleterious(0.02) possibly_damaging(0.822) TCGA-EE-A29M-06 16 1270573 1270573 C T CACNA1H Missense_Mutation p.T2214I 0.15 tolerated(0.2) possibly_damaging(0.611) TCGA-EE-A29M-06 16 1270696 1270696 C T CACNA1H Missense_Mutation p.S2255F 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.467) TCGA-EE-A29M-06 16 1552673 1552673 C A TELO2 Missense_Mutation p.L561M 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 16 16110399 16110399 T A ABCC1 Missense_Mutation p.F179Y 0.16 tolerated(0.49) benign(0.003) TCGA-EE-A29M-06 16 16269830 16269830 C T ABCC6 Silent p.G868G 0.33 TCGA-EE-A29M-06 16 1842307 1842307 C T IGFALS Missense_Mutation p.G76S 0.13 tolerated(0.92) possibly_damaging(0.855) TCGA-EE-A29M-06 16 1961657 1961657 C T HS3ST6 Silent p.Q290Q 0.28 TCGA-EE-A29M-06 16 20322489 20322489 G A GP2 3'UTR 0.15 TCGA-EE-A29M-06 16 20476979 20476979 G A ACSM2A Silent p.G106G 0.09 TCGA-EE-A29M-06 16 20554476 20554476 C T ACSM2B Missense_Mutation p.D464N 0.06 deleterious(0) probably_damaging(0.944) TCGA-EE-A29M-06 16 20566764 20566764 T A ACSM2B Missense_Mutation p.K141N 0.16 deleterious(0.01) possibly_damaging(0.886) TCGA-EE-A29M-06 16 20696539 20696539 C T ACSM1 Missense_Mutation p.V127M 0.08 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A29M-06 16 21048078 21048078 C T DNAH3 Missense_Mutation p.M1681I 0.39 tolerated(0.39) benign(0.065) TCGA-EE-A29M-06 16 21049164 21049164 C T DNAH3 Silent p.E1623E 0.15 TCGA-EE-A29M-06 16 21172581 21172581 C T TMEM159 Silent p.S26S 0.11 TCGA-EE-A29M-06 16 21213444 21213444 C T ZP2 Missense_Mutation p.G423E 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A29M-06 16 21221024 21221024 C T ZP2 Silent p.P86P 0.19 TCGA-EE-A29M-06 16 22563783 22563783 C T RP11-368J21.3 RNA 0.11 TCGA-EE-A29M-06 16 23208665 23208665 C T SCNN1G Missense_Mutation p.H332Y 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 16 24372930 24372930 C T CACNG3 Missense_Mutation p.R232W 0.18 deleterious(0) probably_damaging(0.953) TCGA-EE-A29M-06 16 2495514 2495514 C T CCNF Silent p.L329L 0.32 TCGA-EE-A29M-06 16 2514086 2514086 C T C16orf59 Silent p.P337P 0.25 TCGA-EE-A29M-06 16 27374928 27374928 C T IL4R Missense_Mutation p.S752F 0.21 deleterious(0) probably_damaging(0.942) TCGA-EE-A29M-06 16 27483215 27483215 C T GTF3C1 Silent p.K1460K 0.36 TCGA-EE-A29M-06 16 2813884 2813884 G A SRRM2 Missense_Mutation p.G1119S 0.34 unknown(0) TCGA-EE-A29M-06 16 2817055 2817055 C T SRRM2 Missense_Mutation p.H2176Y 0.27 probably_damaging(0.962) TCGA-EE-A29M-06 16 28331843 28331843 C T SBK1 Silent p.F292F 0.25 TCGA-EE-A29M-06 16 29853076 29853076 C T MVP Missense_Mutation p.P451S 0.18 tolerated(0.36) benign(0.01) TCGA-EE-A29M-06 16 30507442 30507442 C T ITGAL Silent p.L510L 0.32 TCGA-EE-A29M-06 16 30762461 30762461 C T PHKG2 Nonsense_Mutation p.R44* 0.22 TCGA-EE-A29M-06 16 30904032 30904032 G A BCL7C Missense_Mutation p.S106F 0.21 tolerated(0.65) benign(0.276) TCGA-EE-A29M-06 16 31090315 31090315 C T ZNF646 Silent p.F890F 0.28 TCGA-EE-A29M-06 16 31144211 31144211 C T PRSS8 Silent p.E110E 0.15 TCGA-EE-A29M-06 16 31374258 31374258 C T ITGAX Silent p.I454I 0.29 TCGA-EE-A29M-06 16 31393269 31393269 C T ITGAX 3'UTR 0.12 TCGA-EE-A29M-06 16 31477080 31477080 C T ARMC5 Intron 0.23 TCGA-EE-A29M-06 16 32264846 32264846 G A TP53TG3D Missense_Mutation p.E58K 0.15 tolerated_low_confidence(0.63) benign(0) TCGA-EE-A29M-06 16 3255187 3255187 G A OR1F1 3'UTR 0.10 TCGA-EE-A29M-06 16 4431686 4431686 G A VASN Missense_Mutation p.D270N 0.29 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 16 46617964 46617964 G A SHCBP1 Missense_Mutation p.T501I 0.32 tolerated(0.34) benign(0.009) TCGA-EE-A29M-06 16 47117342 47117342 G A NETO2 Silent p.S456S 0.31 TCGA-EE-A29M-06 16 47462722 47462722 A C ITFG1 Missense_Mutation p.F216L 0.13 tolerated(0.3) probably_damaging(0.916) TCGA-EE-A29M-06 16 47462726 47462726 T A ITFG1 Missense_Mutation p.D215V 0.13 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 16 50667136 50667136 C T NKD1 Missense_Mutation p.P286L 0.16 tolerated(0.12) possibly_damaging(0.561) TCGA-EE-A29M-06 16 50765676 50765676 C T NOD2 Silent p.F1023F 0.31 TCGA-EE-A29M-06 16 50783723 50783723 C T CYLD Silent p.L38L 0.29 TCGA-EE-A29M-06 16 5097914 5097914 G A C16orf89 Missense_Mutation p.S307L 0.18 tolerated(1) benign(0) TCGA-EE-A29M-06 16 51173074 51173074 T C SALL1 Missense_Mutation p.Y1020C 0.34 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A29M-06 16 51174202 51174202 G A SALL1 Missense_Mutation p.S644F 0.12 deleterious(0) benign(0.14) TCGA-EE-A29M-06 16 55361597 55361597 C T IRX6 Silent p.N171N 0.11 TCGA-EE-A29M-06 16 55854384 55854384 G A CES1 Missense_Mutation p.S234F 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 16 55905641 55905641 G A CES5A Nonsense_Mutation p.Q134* 0.12 TCGA-EE-A29M-06 16 56906647 56906647 C T SLC12A3 Silent p.F348F 0.13 TCGA-EE-A29M-06 16 57004989 57004989 C T CETP Missense_Mutation p.T191I 0.29 deleterious(0) probably_damaging(0.974) TCGA-EE-A29M-06 16 57555046 57555046 C T CCDC102A Silent p.G285G 0.20 TCGA-EE-A29M-06 16 57787413 57787413 C T KATNB1 Nonsense_Mutation p.Q387* 0.20 TCGA-EE-A29M-06 16 58555201 58555201 A G CNOT1 Missense_Mutation p.I2313T 0.31 deleterious(0) possibly_damaging(0.902) TCGA-EE-A29M-06 16 58559989 58559989 A G CNOT1 Silent p.T2169T 0.31 TCGA-EE-A29M-06 16 61761101 61761101 G A CDH8 Missense_Mutation p.S478L 0.13 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29M-06 16 61761118 61761118 C T CDH8 Silent p.R472R 0.21 TCGA-EE-A29M-06 16 61761119 61761119 C T CDH8 Missense_Mutation p.R472K 0.21 tolerated(0.13) benign(0.315) TCGA-EE-A29M-06 16 618156 618156 C T NHLRC4 Silent p.L37L 0.14 TCGA-EE-A29M-06 16 61851630 61851630 C T CDH8 Missense_Mutation p.D344N 0.33 tolerated(0.16) benign(0.022) TCGA-EE-A29M-06 16 66565339 66565339 G A TK2 Missense_Mutation p.L107F 0.08 tolerated(0.45) benign(0.033) TCGA-EE-A29M-06 16 67189143 67189143 G A TRADD Silent p.L162L 0.29 TCGA-EE-A29M-06 16 67323518 67323518 C T KCTD19 Missense_Mutation p.R912K 0.30 tolerated(0.41) benign(0.001) TCGA-EE-A29M-06 16 67325697 67325697 C T KCTD19 Silent p.V754V 0.30 TCGA-EE-A29M-06 16 67327982 67327982 C T KCTD19 Missense_Mutation p.M561I 0.16 tolerated(0.19) benign(0) TCGA-EE-A29M-06 16 67412536 67412536 C T LRRC36 Silent p.L617L 0.17 TCGA-EE-A29M-06 16 67650694 67650694 C T CTCF Silent p.T333T 0.16 TCGA-EE-A29M-06 16 67694231 67694231 G A ACD Missense_Mutation p.L51F 0.45 tolerated_low_confidence(0.07) benign(0.047) TCGA-EE-A29M-06 16 67763291 67763291 G A RANBP10 Missense_Mutation p.S415F 0.17 tolerated(0.1) possibly_damaging(0.771) TCGA-EE-A29M-06 16 68056770 68056770 C G DDX28 Silent p.A112A 0.17 TCGA-EE-A29M-06 16 68156594 68156594 C T NFATC3 Missense_Mutation p.P270S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29M-06 16 68266285 68266285 G A ESRP2 Missense_Mutation p.R315C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 16 706349 706349 C T WDR90 Missense_Mutation p.R672C 0.23 deleterious(0.01) benign(0.008) TCGA-EE-A29M-06 16 70841804 70841804 G A HYDIN Silent p.I5015I 0.27 TCGA-EE-A29M-06 16 70926384 70926384 C T HYDIN Missense_Mutation p.M3099I 0.15 benign(0.216) TCGA-EE-A29M-06 16 71025993 71025993 C T HYDIN Missense_Mutation p.M1255I 0.10 benign(0.002) TCGA-EE-A29M-06 16 71026020 71026020 G A HYDIN Silent p.I1246I 0.26 TCGA-EE-A29M-06 16 71186655 71186655 G T HYDIN Missense_Mutation p.L250I 0.28 possibly_damaging(0.52) TCGA-EE-A29M-06 16 71220705 71220705 G A HYDIN Silent p.L32L 0.23 TCGA-EE-A29M-06 16 720896 720896 C T RHOT2 Missense_Mutation p.S215F 0.23 tolerated(0.7) benign(0.092) TCGA-EE-A29M-06 16 72123027 72123027 G A TXNL4B Missense_Mutation p.T48I 0.36 tolerated(1) probably_damaging(0.987) TCGA-EE-A29M-06 16 72166731 72166731 C T PMFBP1 Missense_Mutation p.E455K 0.16 tolerated(0.15) benign(0.034) TCGA-EE-A29M-06 16 72184567 72184567 G A PMFBP1 Silent p.I192I 0.19 TCGA-EE-A29M-06 16 72821663 72821663 G A ZFHX3 Silent p.V3504V 0.24 TCGA-EE-A29M-06 16 74419271 74419271 G A NPIPB15 Missense_Mutation p.R94Q 0.15 tolerated_low_confidence(0.68) benign(0.03) TCGA-EE-A29M-06 16 74524939 74524939 C T GLG1 Missense_Mutation p.R470Q 0.14 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A29M-06 16 745561 745561 C T FBXL16 Silent p.K332K 0.14 TCGA-EE-A29M-06 16 75269071 75269071 G A BCAR1 Silent p.L622L 0.38 TCGA-EE-A29M-06 16 75563461 75563461 G A CHST5 Silent p.I274I 0.34 TCGA-EE-A29M-06 16 76482006 76482006 C T CNTNAP4 Silent p.F187F 0.34 TCGA-EE-A29M-06 16 76592521 76592521 A T CNTNAP4 Nonsense_Mutation p.K1217* 0.39 TCGA-EE-A29M-06 16 77334280 77334280 G A ADAMTS18 Missense_Mutation p.P852S 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-EE-A29M-06 16 77353911 77353911 G A ADAMTS18 Silent p.L789L 0.30 TCGA-EE-A29M-06 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.19 tolerated(1) benign(0.004) TCGA-EE-A29M-06 16 77775586 77775586 C T NUDT7 Silent p.F152F 0.19 TCGA-EE-A29M-06 16 81087666 81087666 G A RP11-303E16.5 5'Flank 0.16 TCGA-EE-A29M-06 16 820915 820915 C T MSLNL Missense_Mutation p.D824N 0.21 benign(0.014) TCGA-EE-A29M-06 16 84212933 84212933 C T TAF1C Missense_Mutation p.E742K 0.16 tolerated(0.38) benign(0.264) TCGA-EE-A29M-06 16 84360501 84360501 G A WFDC1 Silent p.K206K 0.10 TCGA-EE-A29M-06 16 84778881 84778881 C T USP10 Missense_Mutation p.S265L 0.20 tolerated_low_confidence(1) benign(0) TCGA-EE-A29M-06 16 8839922 8839922 G A ABAT Silent p.L45L 0.14 TCGA-EE-A29M-06 16 9943800 9943800 G A GRIN2A Missense_Mutation p.H381Y 0.21 deleterious(0) benign(0.034) TCGA-EE-A29M-06 17 10358002 10358002 G A MYH4 Missense_Mutation p.A854V 0.33 deleterious(0.02) benign(0.304) TCGA-EE-A29M-06 17 10366423 10366423 C T MYH4 Silent p.K296K 0.35 TCGA-EE-A29M-06 17 10401153 10401153 C T MYH1 Silent p.T1421T 0.42 TCGA-EE-A29M-06 17 10408518 10408518 G A MYH1 Silent p.F799F 0.38 TCGA-EE-A29M-06 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.43 tolerated(0.12) benign(0.252) TCGA-EE-A29M-06 17 10418209 10418209 C T MYH1 Missense_Mutation p.R170Q 0.32 deleterious(0.03) possibly_damaging(0.736) TCGA-EE-A29M-06 17 10426966 10426966 C T MYH2 Silent p.E1773E 0.36 TCGA-EE-A29M-06 17 10428595 10428595 C T MYH2 Silent p.K1536K 0.40 TCGA-EE-A29M-06 17 10429022 10429022 C T MYH2 Silent p.R1453R 0.40 TCGA-EE-A29M-06 17 10432295 10432295 G A MYH2 Silent p.I1152I 0.33 TCGA-EE-A29M-06 17 12656353 12656353 C T MYOCD Missense_Mutation p.S583F 0.40 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A29M-06 17 131580 131580 C T RPH3AL Silent p.K139K 0.47 TCGA-EE-A29M-06 17 16722495 16722495 G T AC022596.6 RNA 0.34 TCGA-EE-A29M-06 17 17088220 17088220 C T MPRIP 3'UTR 0.50 TCGA-EE-A29M-06 17 17719285 17719285 G A SREBF1 Missense_Mutation p.P788S 0.37 tolerated(0.48) benign(0.127) TCGA-EE-A29M-06 17 18077162 18077162 C T MYO15A Missense_Mutation p.S3473F 0.49 unknown(0) TCGA-EE-A29M-06 17 21117515 21117515 G A TMEM11 5'UTR 0.26 TCGA-EE-A29M-06 17 21205551 21205551 C T MAP2K3 Missense_Mutation p.L166F 0.10 deleterious(0.02) benign(0.333) TCGA-EE-A29M-06 17 2298631 2298631 G A MNT Missense_Mutation p.P64L 0.40 tolerated(0.12) benign(0.158) TCGA-EE-A29M-06 17 25932559 25932559 C T KSR1 Missense_Mutation p.R457C 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 17 26671666 26671666 C T TNFAIP1 3'UTR 0.31 TCGA-EE-A29M-06 17 26817327 26817327 C T SLC13A2 Silent p.I78I 0.22 TCGA-EE-A29M-06 17 26864160 26864160 T G FOXN1 Missense_Mutation p.D551E 0.25 tolerated(0.12) possibly_damaging(0.529) TCGA-EE-A29M-06 17 27183392 27183392 C T ERAL1 Nonsense_Mutation p.Q132* 0.25 TCGA-EE-A29M-06 17 27380543 27380543 G A PIPOX Missense_Mutation p.S197N 0.24 tolerated(0.28) benign(0.027) TCGA-EE-A29M-06 17 27949758 27949758 G A CORO6 5'UTR 0.18 TCGA-EE-A29M-06 17 28808215 28808215 C T GOSR1 Missense_Mutation p.S29F 0.26 deleterious(0) probably_damaging(0.984) TCGA-EE-A29M-06 17 2923775 2923775 C T RAP1GAP2 Missense_Mutation p.P546L 0.50 tolerated(0.2) benign(0.019) TCGA-EE-A29M-06 17 2995956 2995956 T C OR1D2 Missense_Mutation p.N112S 0.44 tolerated(0.37) probably_damaging(0.998) TCGA-EE-A29M-06 17 30380327 30380327 C T LRRC37B Missense_Mutation p.P942S 0.20 tolerated_low_confidence(0.6) benign(0) TCGA-EE-A29M-06 17 33482405 33482405 C T UNC45B Silent p.L244L 0.27 TCGA-EE-A29M-06 17 33520991 33520991 G A SLC35G3 Silent p.I112I 0.32 TCGA-EE-A29M-06 17 33679461 33679461 C T SLFN11 Missense_Mutation p.D874N 0.27 tolerated(0.08) benign(0.011) TCGA-EE-A29M-06 17 33966762 33966762 C T AP2B1 Missense_Mutation p.H474Y 0.32 deleterious(0.04) benign(0.206) TCGA-EE-A29M-06 17 34245214 34245214 G A RDM1 3'UTR 0.42 TCGA-EE-A29M-06 17 35900499 35900499 G A SYNRG Silent p.L1117L 0.29 TCGA-EE-A29M-06 17 36482965 36482965 C T GPR179 Missense_Mutation p.G2163R 0.24 tolerated(0.2) benign(0.03) TCGA-EE-A29M-06 17 36707402 36707402 C T SRCIN1 Missense_Mutation p.R984K 0.29 tolerated(0.27) possibly_damaging(0.872) TCGA-EE-A29M-06 17 36717946 36717946 G A SRCIN1 Missense_Mutation p.P485S 0.33 tolerated(0.38) benign(0) TCGA-EE-A29M-06 17 38063225 38063225 G A GSDMB Missense_Mutation p.S239L 0.38 tolerated(0.26) benign(0.011) TCGA-EE-A29M-06 17 38563094 38563094 G A TOP2A Missense_Mutation p.P576L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 17 38721706 38721706 C T CCR7 5'UTR 0.30 TCGA-EE-A29M-06 17 38928343 38928343 C T KRT26 Missense_Mutation p.G8E 0.24 deleterious(0.03) possibly_damaging(0.655) TCGA-EE-A29M-06 17 38955789 38955789 C T KRT28 Silent p.K119K 0.22 TCGA-EE-A29M-06 17 38975387 38975387 C T KRT10 Missense_Mutation p.G467E 0.34 tolerated(0.25) unknown(0) TCGA-EE-A29M-06 17 38978535 38978535 G A KRT10 Silent p.I101I 0.26 TCGA-EE-A29M-06 17 39114819 39114819 C T KRT39 3'UTR 0.28 TCGA-EE-A29M-06 17 39261704 39261704 G A KRTAP4-9 Missense_Mutation p.E22K 0.25 tolerated(0.06) unknown(0) TCGA-EE-A29M-06 17 39580464 39580464 C T KRT37 Silent p.E104E 0.20 TCGA-EE-A29M-06 17 39593659 39593659 G A KRT38 3'UTR 0.27 TCGA-EE-A29M-06 17 39597035 39597035 C T KRT38 Missense_Mutation p.A47T 0.26 tolerated(0.18) benign(0.091) TCGA-EE-A29M-06 17 39681451 39681451 G A KRT19 Silent p.F165F 0.22 TCGA-EE-A29M-06 17 39684284 39684284 G A KRT19 Silent p.S72S 0.24 TCGA-EE-A29M-06 17 39768500 39768500 C T KRT16 Silent p.V147V 0.28 TCGA-EE-A29M-06 17 39777872 39777872 C T KRT17 Silent p.K269K 0.24 TCGA-EE-A29M-06 17 3990781 3990781 G A ZZEF1 Silent p.F763F 0.41 TCGA-EE-A29M-06 17 39928000 39928000 G A JUP Missense_Mutation p.S36F 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 17 40647107 40647107 C T ATP6V0A1 Missense_Mutation p.S464F 0.26 deleterious(0) probably_damaging(0.982) TCGA-EE-A29M-06 17 40766394 40766394 C T TUBG1 Silent p.I320I 0.31 TCGA-EE-A29M-06 17 40914879 40914879 G A RAMP2 3'UTR 0.28 TCGA-EE-A29M-06 17 40947899 40947899 A G WNK4 Silent p.E1093E 0.29 TCGA-EE-A29M-06 17 41020078 41020078 G C AOC4P RNA 0.31 TCGA-EE-A29M-06 17 41152077 41152077 C T RPL27 Missense_Mutation p.S70F 0.31 deleterious(0) benign(0.045) TCGA-EE-A29M-06 17 41477046 41477046 C T ARL4D 5'UTR 0.22 TCGA-EE-A29M-06 17 42340052 42340052 C T SLC4A1 Missense_Mutation p.E20K 0.22 tolerated(0.51) benign(0.052) TCGA-EE-A29M-06 17 42340064 42340064 G A SLC4A1 Silent p.L16L 0.24 TCGA-EE-A29M-06 17 42397345 42397345 G A SLC25A39 3'UTR 0.28 TCGA-EE-A29M-06 17 42849670 42849670 C T ADAM11 Silent p.L193L 0.24 TCGA-EE-A29M-06 17 42979994 42979994 C T CCDC103 Silent p.L180L 0.25 TCGA-EE-A29M-06 17 42987389 42987389 C T GFAP 3'Flank 0.40 TCGA-EE-A29M-06 17 45219617 45219617 A G CDC27 Silent p.F458F 0.30 TCGA-EE-A29M-06 17 45788063 45788063 G A TBKBP1 3'UTR 0.30 TCGA-EE-A29M-06 17 47375697 47375697 G A ZNF652 3'UTR 0.39 TCGA-EE-A29M-06 17 48191655 48191655 C T SAMD14 Missense_Mutation p.D308N 0.31 deleterious(0.04) possibly_damaging(0.828) TCGA-EE-A29M-06 17 48212684 48212684 G A PPP1R9B 3'UTR 0.27 TCGA-EE-A29M-06 17 48603517 48603517 G A MYCBPAP Missense_Mutation p.M729I 0.27 tolerated(0.16) benign(0.156) TCGA-EE-A29M-06 17 48605597 48605597 G A MYCBPAP Silent p.K834K 0.16 TCGA-EE-A29M-06 17 48696263 48696263 G A CACNA1G Nonsense_Mutation p.W1892* 0.35 TCGA-EE-A29M-06 17 48697069 48697069 C T CACNA1G Missense_Mutation p.S1936F 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 17 51902109 51902109 C T KIF2B Missense_Mutation p.S572L 0.30 tolerated(0.23) possibly_damaging(0.776) TCGA-EE-A29M-06 17 5434015 5434015 G A NLRP1 Silent p.F1102F 0.33 TCGA-EE-A29M-06 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.24 TCGA-EE-A29M-06 17 56350865 56350865 G A MPO Missense_Mutation p.R511C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 17 56386570 56386570 G A BZRAP1 Nonsense_Mutation p.R1355* 0.28 TCGA-EE-A29M-06 17 57033120 57033120 G A PPM1E Missense_Mutation p.G192E 0.29 tolerated(0.11) benign(0.376) TCGA-EE-A29M-06 17 57089803 57089803 T C TRIM37 Missense_Mutation p.N861D 0.21 tolerated_low_confidence(0.16) benign(0.001) TCGA-EE-A29M-06 17 57134297 57134297 G A TRIM37 Missense_Mutation p.R380C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 17 57134298 57134298 G A TRIM37 Silent p.F379F 0.16 TCGA-EE-A29M-06 17 57287389 57287389 G A SMG8 5'UTR 0.33 TCGA-EE-A29M-06 17 57684448 57684448 C T DHX40 Missense_Mutation p.S752F 0.25 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-EE-A29M-06 17 59560748 59560748 G A TBX4 Silent p.R503R 0.30 TCGA-EE-A29M-06 17 60678057 60678057 C T TLK2 Silent p.F532F 0.33 TCGA-EE-A29M-06 17 60742190 60742190 C T MRC2 Silent p.L134L 0.28 TCGA-EE-A29M-06 17 60768483 60768483 C T MRC2 Missense_Mutation p.P1396S 0.25 tolerated(0.12) benign(0.05) TCGA-EE-A29M-06 17 60813228 60813228 G A MARCH10 Intron 0.33 TCGA-EE-A29M-06 17 60813617 60813617 C T MARCH10 Missense_Mutation p.E538K 0.30 deleterious(0.02) possibly_damaging(0.621) TCGA-EE-A29M-06 17 60814370 60814370 C T MARCH10 Missense_Mutation p.E287K 0.31 deleterious(0.04) possibly_damaging(0.521) TCGA-EE-A29M-06 17 61498783 61498783 C T TANC2 Missense_Mutation p.P1814S 0.35 tolerated_low_confidence(0.33) benign(0.057) TCGA-EE-A29M-06 17 61910669 61910669 G C SMARCD2 Missense_Mutation p.R477G 0.22 deleterious(0) probably_damaging(0.987) TCGA-EE-A29M-06 17 61949732 61949732 C T CSH2 Intron 0.25 TCGA-EE-A29M-06 17 62025267 62025267 C T SCN4A Missense_Mutation p.D1101N 0.21 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 17 62041908 62041908 G A SCN4A Silent p.L458L 0.27 TCGA-EE-A29M-06 17 64210703 64210703 C T APOH Missense_Mutation p.E284K 0.26 tolerated(0.11) benign(0.065) TCGA-EE-A29M-06 17 65936603 65936603 C T BPTF Missense_Mutation p.S2103F 0.29 probably_damaging(0.999) TCGA-EE-A29M-06 17 66036862 66036862 C T KPNA2 Silent p.L94L 0.28 TCGA-EE-A29M-06 17 66883513 66883513 G A ABCA8 Silent p.F1053F 0.25 TCGA-EE-A29M-06 17 67101643 67101643 G A ABCA6 Silent p.P900P 0.23 TCGA-EE-A29M-06 17 67212388 67212388 G A ABCA10 Silent p.F214F 0.28 TCGA-EE-A29M-06 17 67501925 67501925 G A MAP2K6 Silent p.K7K 0.25 TCGA-EE-A29M-06 17 71281793 71281793 C T CDC42EP4 Missense_Mutation p.D283N 0.33 tolerated(0.19) possibly_damaging(0.642) TCGA-EE-A29M-06 17 7189193 7189193 A G SLC2A4 Missense_Mutation p.N431S 0.42 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29M-06 17 7221234 7221234 G A NEURL4 Missense_Mutation p.P1360S 0.38 tolerated(0.33) benign(0.002) TCGA-EE-A29M-06 17 72537790 72537790 C T CD300C Missense_Mutation p.V205M 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 17 72539092 72539092 G A CD300C Silent p.S145S 0.27 TCGA-EE-A29M-06 17 72862348 72862348 G A FDXR Missense_Mutation p.H181Y 0.24 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A29M-06 17 72926630 72926630 C T OTOP2 Silent p.F300F 0.32 TCGA-EE-A29M-06 17 72945471 72945471 A C OTOP3 Missense_Mutation p.H584P 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 17 7324589 7324589 G A SPEM1 Missense_Mutation p.G199S 0.37 tolerated(0.24) probably_damaging(0.994) TCGA-EE-A29M-06 17 73898128 73898128 C T MRPL38 Missense_Mutation p.E119K 0.38 deleterious(0.04) benign(0.055) TCGA-EE-A29M-06 17 74005252 74005252 C T EVPL Missense_Mutation p.R1345Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 17 74464834 74464834 C T AANAT Silent p.S47S 0.21 TCGA-EE-A29M-06 17 74622736 74622736 C T ST6GALNAC1 Silent p.G436G 0.25 TCGA-EE-A29M-06 17 74639813 74639813 G A ST6GALNAC1 5'UTR 0.25 TCGA-EE-A29M-06 17 7572878 7572878 G A TP53 3'UTR 0.46 TCGA-EE-A29M-06 17 7578530 7578530 A G TP53 Missense_Mutation p.F134L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 17 76067190 76067190 G A TNRC6C Missense_Mutation p.D932N 0.30 tolerated(0.07) benign(0.077) TCGA-EE-A29M-06 17 76503579 76503579 C T DNAH17 Silent p.G1511G 0.20 TCGA-EE-A29M-06 17 76528663 76528663 G A DNAH17 Silent p.F1005F 0.33 TCGA-EE-A29M-06 17 7695608 7695608 G A DNAH2 Silent p.R2364R 0.38 TCGA-EE-A29M-06 17 7809553 7809553 T A CHD3 Intron 0.31 TCGA-EE-A29M-06 17 7809555 7809555 C T CHD3 Intron 0.28 TCGA-EE-A29M-06 17 78897296 78897296 C T RPTOR Silent p.S877S 0.11 TCGA-EE-A29M-06 17 79426544 79426544 C T RP11-1055B8.7 Missense_Mutation p.S1940F 0.30 probably_damaging(0.997) TCGA-EE-A29M-06 17 7943291 7943291 G A ALOX15B Missense_Mutation p.E147K 0.35 tolerated(0.22) benign(0.001) TCGA-EE-A29M-06 17 7984078 7984078 C T ALOX12B Missense_Mutation p.G183E 0.38 deleterious(0) probably_damaging(0.918) TCGA-EE-A29M-06 17 79862682 79862682 G A PCYT2 3'UTR 0.27 TCGA-EE-A29M-06 17 79891108 79891108 G A PYCR1 Silent p.A314A 0.31 TCGA-EE-A29M-06 17 79954519 79954519 C T ASPSCR1 Missense_Mutation p.P244S 0.29 deleterious(0) unknown(0) TCGA-EE-A29M-06 17 80043121 80043121 G A FASN Missense_Mutation p.S1427F 0.28 deleterious(0.05) benign(0.396) TCGA-EE-A29M-06 17 80320137 80320137 C T TEX19 Silent p.C37C 0.29 TCGA-EE-A29M-06 17 80350308 80350308 G A OGFOD3 3'UTR 0.22 TCGA-EE-A29M-06 17 80373338 80373338 G A OGFOD3 Silent p.V80V 0.24 TCGA-EE-A29M-06 17 80788495 80788495 C T ZNF750 Silent p.R565R 0.31 TCGA-EE-A29M-06 17 8701791 8701791 C T MFSD6L Silent p.G216G 0.33 TCGA-EE-A29M-06 18 14534953 14534953 C T POTEC Silent p.V288V 0.13 TCGA-EE-A29M-06 18 14752679 14752679 G A ANKRD30B Silent p.K112K 0.25 TCGA-EE-A29M-06 18 18550323 18550323 G A ROCK1 Missense_Mutation p.H936Y 0.49 tolerated(0.83) benign(0.001) TCGA-EE-A29M-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.46 TCGA-EE-A29M-06 18 22023054 22023054 C T IMPACT Missense_Mutation p.P178S 0.41 tolerated(0.24) benign(0.132) TCGA-EE-A29M-06 18 25570243 25570243 C T CDH2 Silent p.K472K 0.33 TCGA-EE-A29M-06 18 28574457 28574457 G A DSC3 Intron 0.44 TCGA-EE-A29M-06 18 2891684 2891684 G A EMILIN2 Missense_Mutation p.G520E 0.43 tolerated(0.42) benign(0.011) TCGA-EE-A29M-06 18 28968889 28968889 A G DSG4 Missense_Mutation p.E142G 0.44 deleterious(0.04) probably_damaging(0.973) TCGA-EE-A29M-06 18 28993089 28993089 C T DSG4 Missense_Mutation p.P904L 0.42 tolerated(0.86) benign(0.001) TCGA-EE-A29M-06 18 30260388 30260388 C T KLHL14 Silent p.G471G 0.35 TCGA-EE-A29M-06 18 30672787 30672787 T C CCDC178 Missense_Mutation p.N776D 0.39 tolerated(0.43) benign(0.025) TCGA-EE-A29M-06 18 31319566 31319566 C T ASXL3 Missense_Mutation p.S733F 0.44 probably_damaging(0.999) TCGA-EE-A29M-06 18 31323950 31323950 G A ASXL3 Missense_Mutation p.E1380K 0.44 possibly_damaging(0.524) TCGA-EE-A29M-06 18 31523038 31523038 C T NOL4 Silent p.E511E 0.47 TCGA-EE-A29M-06 18 34182646 34182646 C T FHOD3 Missense_Mutation p.P243L 0.58 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A29M-06 18 42531182 42531182 G A SETBP1 Missense_Mutation p.R626Q 0.42 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A29M-06 18 42532252 42532252 C T SETBP1 Missense_Mutation p.P983S 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29M-06 18 45555767 45555767 G A ZBTB7C Missense_Mutation p.A575V 0.30 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EE-A29M-06 18 47088769 47088769 C T LIPG Silent p.L31L 0.46 TCGA-EE-A29M-06 18 47777253 47777253 C T CCDC11 Missense_Mutation p.A291T 0.42 tolerated(0.06) benign(0.024) TCGA-EE-A29M-06 18 47778003 47778003 G A CCDC11 Nonsense_Mutation p.R209* 0.44 TCGA-EE-A29M-06 18 48252376 48252376 C T MAPK4 Missense_Mutation p.R300C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 18 56936640 56936640 T G RAX Missense_Mutation p.S213R 0.25 tolerated(0.17) benign(0.001) TCGA-EE-A29M-06 18 60217681 60217681 A G ZCCHC2 Missense_Mutation p.E434G 0.41 deleterious(0) benign(0.086) TCGA-EE-A29M-06 18 61463551 61463551 G A SERPINB7 Missense_Mutation p.D130N 0.52 tolerated(0.11) probably_damaging(1) TCGA-EE-A29M-06 18 633399 633399 G A CLUL1 Missense_Mutation p.E320K 0.34 tolerated(0.35) benign(0.025) TCGA-EE-A29M-06 18 66564531 66564531 G A CCDC102B Missense_Mutation p.E377K 0.36 tolerated(0.05) probably_damaging(0.968) TCGA-EE-A29M-06 18 67844067 67844067 G A RTTN Silent p.L440L 0.37 TCGA-EE-A29M-06 18 6912216 6912216 G A ARHGAP28 3'UTR 0.54 TCGA-EE-A29M-06 18 74091084 74091084 G A ZNF516 Missense_Mutation p.P996S 0.40 tolerated(0.56) benign(0.01) TCGA-EE-A29M-06 18 74091180 74091180 G A ZNF516 Missense_Mutation p.P964S 0.35 tolerated(0.91) benign(0.03) TCGA-EE-A29M-06 18 74091181 74091181 G A ZNF516 Silent p.A963A 0.36 TCGA-EE-A29M-06 18 74659504 74659504 G A ZNF236 Missense_Mutation p.D1602N 0.49 tolerated(0.08) benign(0.041) TCGA-EE-A29M-06 18 9211730 9211730 A G ANKRD12 Silent p.Q200Q 0.38 TCGA-EE-A29M-06 19 10081882 10081882 G A COL5A3 Missense_Mutation p.S1276L 0.22 unknown(0) TCGA-EE-A29M-06 19 10087955 10087955 C T COL5A3 Missense_Mutation p.D1080N 0.27 probably_damaging(0.935) TCGA-EE-A29M-06 19 10088055 10088055 C T COL5A3 Missense_Mutation p.E1074K 0.26 probably_damaging(0.98) TCGA-EE-A29M-06 19 10114820 10114820 C T COL5A3 Missense_Mutation p.G199E 0.25 unknown(0) TCGA-EE-A29M-06 19 10114821 10114821 C T COL5A3 Missense_Mutation p.G199R 0.25 unknown(0) TCGA-EE-A29M-06 19 10426415 10426415 C T FDX1L Missense_Mutation p.E56K 0.30 tolerated(0.81) benign(0.004) TCGA-EE-A29M-06 19 1046382 1046382 C T ABCA7 Silent p.P533P 0.28 TCGA-EE-A29M-06 19 1055172 1055172 C T ABCA7 Missense_Mutation p.P1343S 0.19 deleterious(0.01) benign(0.064) TCGA-EE-A29M-06 19 11152215 11152215 C T SMARCA4 Missense_Mutation p.A1468V 0.32 benign(0.051) TCGA-EE-A29M-06 19 11833694 11833694 G A ZNF823 Missense_Mutation p.P219S 0.26 deleterious(0.04) possibly_damaging(0.853) TCGA-EE-A29M-06 19 11944219 11944219 C T ZNF440 3'UTR 0.28 TCGA-EE-A29M-06 19 12090438 12090438 C T ZNF763 3'UTR 0.27 TCGA-EE-A29M-06 19 12188332 12188332 C T ZNF844 3'UTR 0.42 TCGA-EE-A29M-06 19 12542018 12542018 G A ZNF443 Missense_Mutation p.S323F 0.31 tolerated(0.24) benign(0.068) TCGA-EE-A29M-06 19 12802235 12802235 G C FBXW9 Missense_Mutation p.R238G 0.57 tolerated(0.39) benign(0.368) TCGA-EE-A29M-06 19 13255265 13255265 C T STX10 Missense_Mutation p.G237R 0.32 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A29M-06 19 13366061 13366061 C T CACNA1A Missense_Mutation p.D1535N 0.38 benign(0.012) TCGA-EE-A29M-06 19 14020719 14020719 C T CC2D1A Silent p.F48F 0.39 TCGA-EE-A29M-06 19 14213654 14213654 G A PRKACA Missense_Mutation p.L104F 0.30 deleterious(0.04) benign(0.386) TCGA-EE-A29M-06 19 14710921 14710921 C T CLEC17A Missense_Mutation p.S274L 0.20 deleterious(0) probably_damaging(0.946) TCGA-EE-A29M-06 19 15052452 15052452 C T OR7C2 Missense_Mutation p.S51L 0.47 deleterious_low_confidence(0.02) benign(0.033) TCGA-EE-A29M-06 19 15198369 15198369 C T OR1I1 Nonsense_Mutation p.Q165* 0.23 TCGA-EE-A29M-06 19 15567445 15567445 C T RASAL3 Missense_Mutation p.D482N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 19 15839200 15839200 C T OR10H2 Missense_Mutation p.T116I 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 19 15852409 15852409 C T OR10H3 Silent p.I69I 0.18 TCGA-EE-A29M-06 19 15905563 15905563 G A OR10H5 Silent p.R235R 0.20 TCGA-EE-A29M-06 19 15990451 15990451 C T CYP4F2 Missense_Mutation p.G426E 0.16 deleterious(0.01) possibly_damaging(0.865) TCGA-EE-A29M-06 19 16038271 16038271 C T CYP4F11 Missense_Mutation p.M122I 0.18 tolerated(0.19) benign(0.005) TCGA-EE-A29M-06 19 16040318 16040318 G A CYP4F11 Missense_Mutation p.L98F 0.15 tolerated(0.41) benign(0.005) TCGA-EE-A29M-06 19 17017847 17017847 G A CPAMD8 Silent p.A1361A 0.29 TCGA-EE-A29M-06 19 17476205 17476205 C T PLVAP Missense_Mutation p.E357K 0.26 deleterious(0) probably_damaging(0.924) TCGA-EE-A29M-06 19 17534499 17534499 C T MVB12A Intron 0.17 TCGA-EE-A29M-06 19 17571610 17571610 C T NXNL1 Silent p.E23E 0.41 TCGA-EE-A29M-06 19 17662690 17662690 G A FAM129C Intron 0.20 TCGA-EE-A29M-06 19 17918894 17918894 C T B3GNT3 Missense_Mutation p.P93L 0.41 deleterious(0.03) benign(0.022) TCGA-EE-A29M-06 19 17927841 17927841 C T INSL3 Missense_Mutation p.D105N 0.41 tolerated_low_confidence(0.14) benign(0.021) TCGA-EE-A29M-06 19 18170811 18170811 C T IL12RB1 Missense_Mutation p.G626S 0.46 deleterious(0.04) possibly_damaging(0.642) TCGA-EE-A29M-06 19 18273314 18273314 C T PIK3R2 Silent p.L369L 0.47 TCGA-EE-A29M-06 19 18274115 18274115 C T PIK3R2 Nonsense_Mutation p.Q445* 0.22 TCGA-EE-A29M-06 19 18328995 18328995 G A PDE4C Missense_Mutation p.H432Y 0.45 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 19 18705159 18705159 G T CRLF1 Missense_Mutation p.F370L 0.41 deleterious_low_confidence(0.01) benign(0.256) TCGA-EE-A29M-06 19 19030520 19030520 C T DDX49 5'UTR 0.23 TCGA-EE-A29M-06 19 19381838 19381838 G C TM6SF2 Silent p.L64L 0.22 TCGA-EE-A29M-06 19 19748827 19748827 C T GMIP Missense_Mutation p.E277K 0.43 deleterious(0.01) possibly_damaging(0.749) TCGA-EE-A29M-06 19 21132809 21132809 C T ZNF85 Missense_Mutation p.L497F 0.48 tolerated(0.07) possibly_damaging(0.791) TCGA-EE-A29M-06 19 21240276 21240276 C A ZNF430 Missense_Mutation p.L388I 0.48 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A29M-06 19 21606448 21606448 C T ZNF493 Silent p.A329A 0.19 TCGA-EE-A29M-06 19 21909429 21909429 G A ZNF100 3'UTR 0.18 TCGA-EE-A29M-06 19 22154826 22154826 C T ZNF208 Missense_Mutation p.E1004K 0.36 tolerated(0.57) benign(0.082) TCGA-EE-A29M-06 19 22157237 22157237 G A ZNF208 Missense_Mutation p.S200F 0.15 tolerated(0.24) benign(0.027) TCGA-EE-A29M-06 19 2226942 2226942 C T DOT1L Silent p.F1474F 0.30 TCGA-EE-A29M-06 19 22362810 22362810 A T ZNF676 Missense_Mutation p.F570Y 0.41 deleterious(0.03) benign(0.035) TCGA-EE-A29M-06 19 22364321 22364321 C T ZNF676 Missense_Mutation p.M66I 0.20 tolerated(0.1) benign(0.001) TCGA-EE-A29M-06 19 2243414 2243414 C T SF3A2 5'UTR 0.25 TCGA-EE-A29M-06 19 22574340 22574340 C T ZNF98 Missense_Mutation p.R566K 0.46 tolerated(0.61) benign(0.001) TCGA-EE-A29M-06 19 22780192 22780192 C T RN7SL860P 5'Flank 0.18 TCGA-EE-A29M-06 19 22939385 22939385 G A ZNF99 3'Flank 0.45 TCGA-EE-A29M-06 19 22941065 22941065 G A ZNF99 Missense_Mutation p.S549F 0.44 tolerated(0.49) benign(0.004) TCGA-EE-A29M-06 19 23159380 23159380 C T ZNF728 Silent p.E253E 0.16 TCGA-EE-A29M-06 19 23837110 23837110 C A ZNF675 Missense_Mutation p.V209F 0.57 tolerated(1) benign(0) TCGA-EE-A29M-06 19 2413892 2413892 C T TMPRSS9 Silent p.A449A 0.21 TCGA-EE-A29M-06 19 2415735 2415735 G A TMPRSS9 Silent p.G513G 0.37 TCGA-EE-A29M-06 19 2717187 2717187 G A DIRAS1 3'UTR 0.22 TCGA-EE-A29M-06 19 2717188 2717188 G A DIRAS1 3'UTR 0.22 TCGA-EE-A29M-06 19 30165443 30165443 C T PLEKHF1 Missense_Mutation p.H233Y 0.36 tolerated(0.68) benign(0) TCGA-EE-A29M-06 19 30936285 30936285 G A ZNF536 Missense_Mutation p.D606N 0.38 deleterious(0.02) benign(0.274) TCGA-EE-A29M-06 19 31039215 31039215 T A ZNF536 Missense_Mutation p.F897I 0.39 deleterious(0) benign(0.11) TCGA-EE-A29M-06 19 3157840 3157840 C T GNA15 Missense_Mutation p.P287S 0.28 tolerated(0.75) benign(0.002) TCGA-EE-A29M-06 19 33512498 33512498 G A RHPN2 Silent p.V123V 0.32 TCGA-EE-A29M-06 19 33623034 33623034 C T WDR88 5'UTR 0.43 TCGA-EE-A29M-06 19 3381895 3381895 G A NFIC Nonsense_Mutation p.W72* 0.30 TCGA-EE-A29M-06 19 3586991 3586991 C T GIPC3 Silent p.F197F 0.32 TCGA-EE-A29M-06 19 36222932 36222932 C T KMT2B Missense_Mutation p.P1854L 0.32 benign(0.339) TCGA-EE-A29M-06 19 36348017 36348017 G A KIRREL2 5'UTR 0.41 TCGA-EE-A29M-06 19 36357122 36357122 C T KIRREL2 Missense_Mutation p.P619S 0.38 tolerated(0.06) benign(0.005) TCGA-EE-A29M-06 19 36395466 36395466 C T TYROBP 3'UTR 0.46 TCGA-EE-A29M-06 19 38934370 38934370 C T RYR1 Missense_Mutation p.L120F 0.30 probably_damaging(0.996) TCGA-EE-A29M-06 19 38939129 38939129 C T RYR1 Missense_Mutation p.S312F 0.37 probably_damaging(0.986) TCGA-EE-A29M-06 19 38976621 38976621 C T RYR1 Missense_Mutation p.H1776Y 0.48 probably_damaging(0.946) TCGA-EE-A29M-06 19 39516072 39516072 G A FBXO27 Silent p.I277I 0.43 TCGA-EE-A29M-06 19 39898530 39898530 T A ZFP36 Missense_Mutation p.S64T 0.44 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 19 40006639 40006639 G A SELV Missense_Mutation p.V263I 0.32 tolerated(1) possibly_damaging(0.739) TCGA-EE-A29M-06 19 40433120 40433120 C T FCGBP Nonsense_Mutation p.W383* 0.58 TCGA-EE-A29M-06 19 40900362 40900362 C T PRX Silent p.E1299E 0.33 TCGA-EE-A29M-06 19 41072235 41072235 G A SPTBN4 Silent p.E2102E 0.33 TCGA-EE-A29M-06 19 42085753 42085753 G A CEACAM21 Missense_Mutation p.E158K 0.36 deleterious(0.02) possibly_damaging(0.679) TCGA-EE-A29M-06 19 42341212 42341212 G A LYPD4 3'UTR 0.40 TCGA-EE-A29M-06 19 4294678 4294678 C T TMIGD2 Splice_Site p.X150_splice 0.32 TCGA-EE-A29M-06 19 43709640 43709640 C T PSG4 Missense_Mutation p.G17R 0.39 tolerated(0.22) probably_damaging(0.986) TCGA-EE-A29M-06 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.37 tolerated(0.18) possibly_damaging(0.507) TCGA-EE-A29M-06 19 44377825 44377825 G A ZNF404 Missense_Mutation p.H181Y 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29M-06 19 44611467 44611467 C T ZNF224 Missense_Mutation p.S385L 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 19 45016134 45016134 T C CEACAM20 Intron 0.39 TCGA-EE-A29M-06 19 45021274 45021274 G A CEACAM20 RNA 0.40 TCGA-EE-A29M-06 19 4511331 4511331 G A PLIN4 Nonsense_Mutation p.Q867* 0.15 TCGA-EE-A29M-06 19 4523782 4523782 C T PLIN5 Missense_Mutation p.E384K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29M-06 19 4534036 4534036 C T PLIN5 Silent p.Q17Q 0.19 TCGA-EE-A29M-06 19 45422608 45422608 C T APOC1 3'Flank 0.41 TCGA-EE-A29M-06 19 47204181 47204181 G A PRKD2 Silent p.F332F 0.36 TCGA-EE-A29M-06 19 47823154 47823154 C T C5AR1 Silent p.A40A 0.39 TCGA-EE-A29M-06 19 48385458 48385458 G A SULT2A1 Missense_Mutation p.L119F 0.44 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A29M-06 19 48547171 48547171 G A CABP5 Silent p.F3F 0.41 TCGA-EE-A29M-06 19 49107049 49107049 G A FAM83E Missense_Mutation p.P293L 0.43 deleterious(0.04) possibly_damaging(0.489) TCGA-EE-A29M-06 19 50838178 50838178 G A NAPSB RNA 0.29 TCGA-EE-A29M-06 19 51165511 51165511 C T SHANK1 Missense_Mutation p.G2066E 0.36 unknown(0) TCGA-EE-A29M-06 19 51215336 51215336 C T SHANK1 Silent p.K276K 0.35 TCGA-EE-A29M-06 19 51363503 51363503 G A KLK3 3'UTR 0.52 TCGA-EE-A29M-06 19 51453277 51453277 C T KLK5 Missense_Mutation p.D57N 0.21 tolerated(0.26) benign(0.277) TCGA-EE-A29M-06 19 51462394 51462394 C T KLK6 3'UTR 0.39 TCGA-EE-A29M-06 19 51503822 51503822 C T KLK8 Missense_Mutation p.E75K 0.38 deleterious(0.03) possibly_damaging(0.571) TCGA-EE-A29M-06 19 51520527 51520527 G A KLK10 Silent p.L36L 0.40 TCGA-EE-A29M-06 19 51527622 51527622 G A KLK11 Intron 0.30 TCGA-EE-A29M-06 19 51582952 51582952 G A KLK14 Nonsense_Mutation p.Q90* 0.25 TCGA-EE-A29M-06 19 51645725 51645725 C T SIGLEC7 Silent p.S33S 0.34 TCGA-EE-A29M-06 19 51920720 51920720 C T SIGLEC10 Splice_Site p.X13_splice 0.37 TCGA-EE-A29M-06 19 52001351 52001351 C T SIGLEC12 Silent p.G442G 0.32 TCGA-EE-A29M-06 19 52001352 52001352 C T SIGLEC12 Missense_Mutation p.G442E 0.31 tolerated(0.06) possibly_damaging(0.737) TCGA-EE-A29M-06 19 52569368 52569368 T C ZNF841 Silent p.R589R 0.46 TCGA-EE-A29M-06 19 52955220 52955220 G A ZNF578 5'Flank 0.42 TCGA-EE-A29M-06 19 53432467 53432467 C T ZNF321P Missense_Mutation p.E131K 0.39 tolerated(1) benign(0.005) TCGA-EE-A29M-06 19 53855283 53855283 C T ZNF845 Missense_Mutation p.S452L 0.48 deleterious(0) probably_damaging(0.945) TCGA-EE-A29M-06 19 54080355 54080355 C T ZNF331 Missense_Mutation p.H181Y 0.38 deleterious(0) probably_damaging(0.964) TCGA-EE-A29M-06 19 54137908 54137908 C T DPRX Missense_Mutation p.S51L 0.45 tolerated(0.34) benign(0.376) TCGA-EE-A29M-06 19 54204530 54204530 C T MIR520B RNA 0.35 TCGA-EE-A29M-06 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.48 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A29M-06 19 54403497 54403497 A T PRKCG Missense_Mutation p.Y431F 0.43 tolerated(0.92) benign(0.419) TCGA-EE-A29M-06 19 55098721 55098721 G A LILRA2 Missense_Mutation p.G454S 0.38 deleterious(0.04) benign(0.131) TCGA-EE-A29M-06 19 55286728 55286728 C T KIR2DL1 Missense_Mutation p.S161F 0.35 tolerated(0.29) possibly_damaging(0.541) TCGA-EE-A29M-06 19 55417935 55417935 A G NCR1 Missense_Mutation p.E42G 0.37 tolerated(1) benign(0) TCGA-EE-A29M-06 19 56329292 56329292 C T NLRP11 Silent p.R83R 0.42 TCGA-EE-A29M-06 19 56369135 56369135 G A NLRP4 Missense_Mutation p.E126K 0.39 tolerated(0.74) benign(0.056) TCGA-EE-A29M-06 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.44 TCGA-EE-A29M-06 19 56424166 56424166 G A NLRP13 Silent p.L339L 0.37 TCGA-EE-A29M-06 19 56515209 56515209 G A NLRP5 Missense_Mutation p.G64R 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29M-06 19 56539137 56539137 G A NLRP5 Missense_Mutation p.R513Q 0.48 tolerated(0.34) benign(0.019) TCGA-EE-A29M-06 19 56896435 56896435 A T ZNF582 Missense_Mutation p.S117R 0.40 tolerated(0.35) benign(0.001) TCGA-EE-A29M-06 19 57326831 57326831 C T PEG3 Silent p.R993R 0.40 TCGA-EE-A29M-06 19 5746063 5746063 C T CATSPERD Missense_Mutation p.S266F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 19 57642852 57642852 C T USP29 3'UTR 0.38 TCGA-EE-A29M-06 19 57646651 57646651 C T ZIM3 Missense_Mutation p.D352N 0.41 tolerated(0.51) probably_damaging(0.97) TCGA-EE-A29M-06 19 58438668 58438668 G T ZNF418 Missense_Mutation p.S294Y 0.35 tolerated(0.1) probably_damaging(0.963) TCGA-EE-A29M-06 19 58564883 58564883 G A ZSCAN1 Missense_Mutation p.E231K 0.35 tolerated(0.67) benign(0.03) TCGA-EE-A29M-06 19 58579314 58579314 C T ZNF135 Missense_Mutation p.H512Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-EE-A29M-06 19 58806335 58806335 C T ZNF8 Silent p.H387H 0.45 TCGA-EE-A29M-06 19 6690727 6690727 C T C3 Silent p.R1134R 0.25 TCGA-EE-A29M-06 19 6711027 6711027 C T C3 Missense_Mutation p.E484K 0.27 tolerated(0.64) benign(0.007) TCGA-EE-A29M-06 19 6732083 6732083 G A GPR108 Silent p.F403F 0.36 TCGA-EE-A29M-06 19 6896522 6896522 C T EMR1 Missense_Mutation p.H70Y 0.30 tolerated(0.73) benign(0.004) TCGA-EE-A29M-06 19 6897271 6897271 G A EMR1 Missense_Mutation p.G117E 0.33 tolerated(0.09) possibly_damaging(0.77) TCGA-EE-A29M-06 19 7573215 7573215 G A C19orf45 Missense_Mutation p.G473S 0.21 tolerated(1) benign(0.001) TCGA-EE-A29M-06 19 7621579 7621579 C T PNPLA6 Silent p.I1093I 0.34 TCGA-EE-A29M-06 19 7671380 7671380 G A CAMSAP3 Missense_Mutation p.E182K 0.33 deleterious(0.04) possibly_damaging(0.591) TCGA-EE-A29M-06 19 7676432 7676432 C T CAMSAP3 Missense_Mutation p.H412Y 0.30 tolerated(0.32) benign(0.244) TCGA-EE-A29M-06 19 7712706 7712706 C T STXBP2 3'UTR 0.42 TCGA-EE-A29M-06 19 7805920 7805920 C T CD209 3'UTR 0.15 TCGA-EE-A29M-06 19 7831541 7831541 G A CLEC4M Splice_Site p.X262_splice 0.21 TCGA-EE-A29M-06 19 8576745 8576745 G A ZNF414 Silent p.P210P 0.28 TCGA-EE-A29M-06 19 8651601 8651601 C T ADAMTS10 Silent p.L748L 0.28 TCGA-EE-A29M-06 19 8994510 8994510 G A MUC16 Silent p.T13794T 0.22 TCGA-EE-A29M-06 19 9005204 9005204 G A MUC16 Silent p.P13291P 0.16 TCGA-EE-A29M-06 19 9005205 9005205 G A MUC16 Missense_Mutation p.P13291L 0.15 probably_damaging(0.935) TCGA-EE-A29M-06 19 9020006 9020006 T G MUC16 Silent p.R12497R 0.25 TCGA-EE-A29M-06 19 9047708 9047708 G A MUC16 Missense_Mutation p.S11308L 0.27 benign(0.092) TCGA-EE-A29M-06 19 9061105 9061105 C T MUC16 Missense_Mutation p.G8781R 0.33 unknown(0) TCGA-EE-A29M-06 19 9063611 9063611 C T MUC16 Silent p.Q7945Q 0.27 TCGA-EE-A29M-06 19 9065098 9065098 T C MUC16 Missense_Mutation p.S7450G 0.25 unknown(0) TCGA-EE-A29M-06 19 9067599 9067599 G A MUC16 Missense_Mutation p.P6616L 0.30 unknown(0) TCGA-EE-A29M-06 19 9067811 9067811 G A MUC16 Silent p.P6545P 0.28 TCGA-EE-A29M-06 19 9072587 9072587 G A MUC16 Silent p.S4953S 0.28 TCGA-EE-A29M-06 19 9073231 9073232 - A MUC16 Frame_Shift_Ins p.Q4739Sfs*3 0.23 TCGA-EE-A29M-06 19 9075783 9075783 G A MUC16 Missense_Mutation p.S3888F 0.29 unknown(0) TCGA-EE-A29M-06 19 9076568 9076568 G A MUC16 Silent p.D3626D 0.32 TCGA-EE-A29M-06 19 9089200 9089200 G A MUC16 Missense_Mutation p.P872L 0.32 unknown(0) TCGA-EE-A29M-06 19 9492219 9492219 C T ZNF177 Silent p.S404S 0.25 TCGA-EE-A29M-06 19 9524886 9524886 G A ZNF266 Missense_Mutation p.P239S 0.28 tolerated(0.07) possibly_damaging(0.884) TCGA-EE-A29M-06 19 9720863 9720863 G A ZNF561 3'UTR 0.31 TCGA-EE-A29M-06 1 104297195 104297195 G A AMY1C Missense_Mutation p.R318Q 0.14 deleterious(0.01) possibly_damaging(0.725) TCGA-EE-A29M-06 1 10725204 10725204 C T CASZ1 Silent p.E147E 0.26 TCGA-EE-A29M-06 1 107691411 107691411 G A NTNG1 Missense_Mutation p.D66N 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 1 109745596 109745596 C T KIAA1324 Silent p.L1002L 0.47 TCGA-EE-A29M-06 1 109777924 109777924 C T SARS Silent p.H280H 0.43 TCGA-EE-A29M-06 1 109816201 109816201 C A CELSR2 Silent p.R2885R 0.44 TCGA-EE-A29M-06 1 110033550 110033550 C T ATXN7L2 Silent p.I455I 0.16 TCGA-EE-A29M-06 1 110050993 110050993 C T AMIGO1 Missense_Mutation p.G181E 0.21 tolerated(0.18) benign(0.03) TCGA-EE-A29M-06 1 110466394 110466394 C T CSF1 Missense_Mutation p.P384L 0.19 tolerated(0.12) benign(0.098) TCGA-EE-A29M-06 1 110607308 110607308 C T ALX3 Silent p.L165L 0.18 TCGA-EE-A29M-06 1 110775514 110775514 C T KCNC4 3'UTR 0.53 TCGA-EE-A29M-06 1 111060588 111060588 C T KCNA10 Silent p.V274V 0.24 TCGA-EE-A29M-06 1 111061260 111061260 C T KCNA10 Silent p.K50K 0.15 TCGA-EE-A29M-06 1 111216508 111216508 G A KCNA3 Silent p.F308F 0.15 TCGA-EE-A29M-06 1 111216544 111216544 G A KCNA3 Silent p.F296F 0.15 TCGA-EE-A29M-06 1 1115637 1115637 C T TTLL10 Silent p.L141L 0.13 TCGA-EE-A29M-06 1 112525136 112525136 C T KCND3 Silent p.K71K 0.50 TCGA-EE-A29M-06 1 112998653 112998653 C T CTTNBP2NL Missense_Mutation p.S180F 0.55 tolerated(0.18) probably_damaging(0.951) TCGA-EE-A29M-06 1 112999393 112999393 C T CTTNBP2NL Missense_Mutation p.P427S 0.16 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A29M-06 1 114401659 114401659 C T PTPN22 Missense_Mutation p.E80K 0.21 tolerated(0.13) benign(0.029) TCGA-EE-A29M-06 1 115220063 115220063 G A AMPD1 Missense_Mutation p.P466S 0.46 tolerated(0.33) possibly_damaging(0.482) TCGA-EE-A29M-06 1 115221019 115221019 C T AMPD1 Missense_Mutation p.E376K 0.42 deleterious(0.03) benign(0.174) TCGA-EE-A29M-06 1 115576718 115576718 C T TSHB Missense_Mutation p.S96F 0.42 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 1 115593096 115593096 C T TSPAN2 3'UTR 0.50 TCGA-EE-A29M-06 1 115601542 115601542 C T TSPAN2 Missense_Mutation p.G136R 0.40 tolerated(0.29) possibly_damaging(0.686) TCGA-EE-A29M-06 1 11561170 11561170 G A PTCHD2 Missense_Mutation p.G41R 0.23 tolerated_low_confidence(0.35) benign(0.307) TCGA-EE-A29M-06 1 1168182 1168182 C T B3GALT6 Missense_Mutation p.P175L 0.35 tolerated(0.09) benign(0.179) TCGA-EE-A29M-06 1 117311214 117311214 C T CD2 Missense_Mutation p.R289C 0.47 deleterious(0.04) benign(0.105) TCGA-EE-A29M-06 1 117618454 117618454 C T TTF2 Silent p.Y416Y 0.55 TCGA-EE-A29M-06 1 117618836 117618836 C T TTF2 Missense_Mutation p.P437L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 119575560 119575560 C T WARS2 Missense_Mutation p.V353M 0.49 deleterious(0) possibly_damaging(0.707) TCGA-EE-A29M-06 1 120057061 120057061 C T HSD3B1 Silent p.L305L 0.48 TCGA-EE-A29M-06 1 12027068 12027068 C T PLOD1 Missense_Mutation p.P559S 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29M-06 1 120438357 120438357 G A ADAM30 Silent p.H201H 0.20 TCGA-EE-A29M-06 1 12144532 12144532 C T TNFRSF8 Silent p.F25F 0.32 TCGA-EE-A29M-06 1 12333117 12333117 C T VPS13D Missense_Mutation p.P721S 0.24 probably_damaging(0.986) TCGA-EE-A29M-06 1 12364674 12364674 C T VPS13D Missense_Mutation p.L2110F 0.27 benign(0) TCGA-EE-A29M-06 1 12416001 12416001 C T VPS13D Missense_Mutation p.P3242L 0.23 probably_damaging(0.998) TCGA-EE-A29M-06 1 12461714 12461714 C T VPS13D Silent p.L3946L 0.29 TCGA-EE-A29M-06 1 12786017 12786017 C T AADACL3 3'Flank 0.32 TCGA-EE-A29M-06 1 12853514 12853514 G A PRAMEF1 Silent p.R46R 0.62 TCGA-EE-A29M-06 1 1289773 1289773 G A MXRA8 Silent p.L356L 0.29 TCGA-EE-A29M-06 1 12942930 12942930 G A PRAMEF4 Missense_Mutation p.R96C 0.49 tolerated(0.08) benign(0.009) TCGA-EE-A29M-06 1 1416287 1416287 C T ATAD3B Missense_Mutation p.S162F 0.18 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A29M-06 1 1417665 1417665 C T ATAD3B Missense_Mutation p.T221I 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A29M-06 1 144886268 144886268 G A PDE4DIP Missense_Mutation p.S989F 0.28 tolerated(0.14) benign(0.091) TCGA-EE-A29M-06 1 145115982 145115982 C T SEC22B RNA 0.09 TCGA-EE-A29M-06 1 145416898 145416898 C T HFE2 Missense_Mutation p.L415F 0.38 deleterious(0.02) benign(0.007) TCGA-EE-A29M-06 1 145696636 145696636 T G CD160 Intron 0.33 TCGA-EE-A29M-06 1 150443485 150443485 A G RPRD2 Silent p.L687L 0.34 TCGA-EE-A29M-06 1 150724439 150724439 C T CTSS Missense_Mutation p.E149K 0.29 deleterious(0) probably_damaging(0.98) TCGA-EE-A29M-06 1 151109466 151109466 G A SEMA6C Silent p.L281L 0.36 TCGA-EE-A29M-06 1 151171446 151171446 G A PIP5K1A 5'UTR 0.23 TCGA-EE-A29M-06 1 151338846 151338846 G A SELENBP1 Missense_Mutation p.P250S 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29M-06 1 151752454 151752454 G A TDRKH Missense_Mutation p.P132S 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 152058510 152058510 G A TCHHL1 Missense_Mutation p.P550S 0.38 tolerated(0.1) benign(0.111) TCGA-EE-A29M-06 1 152127615 152127615 C T RPTN Missense_Mutation p.D654N 0.26 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A29M-06 1 152283748 152283748 T A FLG Missense_Mutation p.D1205V 0.36 possibly_damaging(0.804) TCGA-EE-A29M-06 1 152326553 152326553 C T FLG2 Missense_Mutation p.E1237K 0.33 unknown(0) TCGA-EE-A29M-06 1 152538404 152538404 G A LCE3E 3'UTR 0.18 TCGA-EE-A29M-06 1 152732408 152732408 C T KPRP Missense_Mutation p.S115F 0.37 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A29M-06 1 152749094 152749094 C G LCE1F Missense_Mutation p.R83G 0.29 tolerated_low_confidence(0.5) unknown(0) TCGA-EE-A29M-06 1 152759897 152759897 C T LCE1E Missense_Mutation p.S41F 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-EE-A29M-06 1 152785112 152785112 T A LCE1B Missense_Mutation p.S64T 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29M-06 1 153122421 153122421 G A SPRR2G Missense_Mutation p.P56S 0.30 unknown(0) TCGA-EE-A29M-06 1 153275062 153275062 C T PGLYRP3 Missense_Mutation p.R184Q 0.19 deleterious(0.01) benign(0.336) TCGA-EE-A29M-06 1 153655936 153655936 C T NPR1 Missense_Mutation p.P450S 0.29 tolerated(0.78) benign(0.012) TCGA-EE-A29M-06 1 153750724 153750724 G A SLC27A3 Missense_Mutation p.G464R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 153750725 153750725 G A SLC27A3 Missense_Mutation p.G464E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 153788833 153788833 G A GATAD2B Missense_Mutation p.H378Y 0.36 deleterious(0.03) possibly_damaging(0.716) TCGA-EE-A29M-06 1 154245239 154245239 C T HAX1 Missense_Mutation p.P14S 0.15 tolerated(0.44) benign(0.02) TCGA-EE-A29M-06 1 154923760 154923760 C T PBXIP1 Silent p.Q119Q 0.33 TCGA-EE-A29M-06 1 154932008 154932008 G A PYGO2 Silent p.P156P 0.35 TCGA-EE-A29M-06 1 155005177 155005177 G A DCST2 Silent p.F169F 0.20 TCGA-EE-A29M-06 1 155100398 155100398 G A EFNA1 5'UTR 0.12 TCGA-EE-A29M-06 1 155874197 155874197 G A RIT1 Missense_Mutation p.R129C 0.40 tolerated(0.05) probably_damaging(0.915) TCGA-EE-A29M-06 1 155935123 155935123 G A ARHGEF2 Missense_Mutation p.T184I 0.30 deleterious(0.01) benign(0.415) TCGA-EE-A29M-06 1 156124465 156124465 G A SEMA4A Silent p.G32G 0.38 TCGA-EE-A29M-06 1 156640516 156640516 G A NES Missense_Mutation p.S1155F 0.30 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29M-06 1 156812000 156812000 C T INSRR Missense_Mutation p.D1101N 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 1 156812213 156812213 G A INSRR Nonsense_Mutation p.R1072* 0.36 TCGA-EE-A29M-06 1 1569905 1569905 C T MMP23B Silent p.I359I 0.16 TCGA-EE-A29M-06 1 15771198 15771198 G A CTRC Silent p.K197K 0.29 TCGA-EE-A29M-06 1 157736650 157736650 A T FCRL2 Missense_Mutation p.I425K 0.38 tolerated(0.8) benign(0.003) TCGA-EE-A29M-06 1 157737065 157737065 C T FCRL2 Missense_Mutation p.G373D 0.27 tolerated(0.09) probably_damaging(0.96) TCGA-EE-A29M-06 1 157773789 157773789 G A FCRL1 Silent p.F55F 0.24 TCGA-EE-A29M-06 1 157789804 157789804 C T FCRL1 Silent p.L8L 0.20 TCGA-EE-A29M-06 1 157801660 157801660 G A CD5L 3'UTR 0.35 TCGA-EE-A29M-06 1 158262102 158262102 C T CD1C Missense_Mutation p.P186L 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-EE-A29M-06 1 158369079 158369079 T C OR10T2 Missense_Mutation p.M60V 0.10 deleterious(0) benign(0.164) TCGA-EE-A29M-06 1 158389972 158389972 G A OR10K2 Missense_Mutation p.P229S 0.37 tolerated(0.18) benign(0.137) TCGA-EE-A29M-06 1 158435933 158435933 C T OR10K1 Silent p.F194F 0.20 TCGA-EE-A29M-06 1 158516942 158516942 C T OR6Y1 Silent p.Q318Q 0.26 TCGA-EE-A29M-06 1 158605815 158605815 C T SPTA1 Missense_Mutation p.D1774N 0.21 deleterious(0.03) benign(0.008) TCGA-EE-A29M-06 1 158606460 158606460 C T SPTA1 Missense_Mutation p.E1761K 0.31 deleterious(0) possibly_damaging(0.839) TCGA-EE-A29M-06 1 158615104 158615104 G A SPTA1 Silent p.I1356I 0.23 TCGA-EE-A29M-06 1 158617436 158617436 C T SPTA1 Silent p.Q1263Q 0.27 TCGA-EE-A29M-06 1 158817557 158817557 G A MNDA Missense_Mutation p.D343N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 159035904 159035904 C T AIM2 Silent p.K204K 0.39 TCGA-EE-A29M-06 1 159505366 159505366 C T OR10J5 Silent p.L144L 0.36 TCGA-EE-A29M-06 1 159846350 159846350 G A CCDC19 Missense_Mutation p.L450F 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 1 159898714 159898714 C T IGSF9 Missense_Mutation p.D822N 0.28 tolerated(0.08) benign(0.056) TCGA-EE-A29M-06 1 159921411 159921411 G A SLAMF9 3'UTR 0.29 TCGA-EE-A29M-06 1 159923181 159923181 C T SLAMF9 Silent p.E103E 0.28 TCGA-EE-A29M-06 1 160097516 160097516 C T ATP1A2 Missense_Mutation p.S308F 0.34 deleterious(0) probably_damaging(0.968) TCGA-EE-A29M-06 1 160143376 160143376 C T ATP1A4 Silent p.I620I 0.24 TCGA-EE-A29M-06 1 160168515 160168515 G A CASQ1 Missense_Mutation p.D293N 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A29M-06 1 160252837 160252837 G A PEX19 Silent p.S81S 0.23 TCGA-EE-A29M-06 1 16054325 16054325 C T PLEKHM2 Silent p.F586F 0.33 TCGA-EE-A29M-06 1 160681539 160681539 A G CD48 Silent p.G5G 0.15 TCGA-EE-A29M-06 1 160766091 160766091 C T LY9 Silent p.F38F 0.39 TCGA-EE-A29M-06 1 16101188 16101188 C T FBLIM1 Missense_Mutation p.H263Y 0.32 deleterious(0) benign(0.091) TCGA-EE-A29M-06 1 161017842 161017842 C T ARHGAP30 Missense_Mutation p.R990K 0.40 tolerated(0.08) benign(0.04) TCGA-EE-A29M-06 1 161018253 161018253 C T ARHGAP30 Missense_Mutation p.G853E 0.32 tolerated_low_confidence(0.13) benign(0.146) TCGA-EE-A29M-06 1 161018572 161018572 C T ARHGAP30 Missense_Mutation p.E747K 0.22 tolerated_low_confidence(0.45) benign(0.008) TCGA-EE-A29M-06 1 161069387 161069387 G A KLHDC9 Splice_Site p.X230_splice 0.22 TCGA-EE-A29M-06 1 161681153 161681153 A G FCRLA Missense_Mutation p.I153V 0.31 tolerated(0.28) probably_damaging(0.999) TCGA-EE-A29M-06 1 165183036 165183036 C T LMX1A Missense_Mutation p.E171K 0.38 deleterious(0.01) possibly_damaging(0.83) TCGA-EE-A29M-06 1 166991034 166991034 C T MAEL Missense_Mutation p.S416L 0.32 tolerated_low_confidence(0.07) benign(0.031) TCGA-EE-A29M-06 1 167083001 167083001 C T DUSP27 Silent p.H55H 0.33 TCGA-EE-A29M-06 1 167097833 167097833 G A DUSP27 Silent p.R1155R 0.20 TCGA-EE-A29M-06 1 167674017 167674017 G A RCSD1 3'UTR 0.45 TCGA-EE-A29M-06 1 167852757 167852757 G A ADCY10 Missense_Mutation p.A313V 0.20 tolerated(0.14) benign(0.35) TCGA-EE-A29M-06 1 169388305 169388305 G A CCDC181 Silent p.V387V 0.19 TCGA-EE-A29M-06 1 169483583 169483583 G A F5 Missense_Mutation p.R2215C 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 169519046 169519046 C T F5 Missense_Mutation p.G535E 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 1 169578884 169578884 C T SELP Missense_Mutation p.M397I 0.27 tolerated(0.07) benign(0.135) TCGA-EE-A29M-06 1 169581587 169581587 G A SELP Missense_Mutation p.H277Y 0.40 tolerated(0.06) benign(0.115) TCGA-EE-A29M-06 1 169701077 169701077 C A SELE Missense_Mutation p.C143F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 1 170699449 170699449 G A PRRX1 Intron 0.40 TCGA-EE-A29M-06 1 171168502 171168502 G A FMO2 Missense_Mutation p.G168S 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 1 171251360 171251360 C T FMO1 Silent p.F357F 0.39 TCGA-EE-A29M-06 1 171251419 171251419 C T FMO1 Missense_Mutation p.S377F 0.16 deleterious(0) probably_damaging(0.954) TCGA-EE-A29M-06 1 171254340 171254340 G A FMO1 Splice_Site p.X419_splice 0.26 TCGA-EE-A29M-06 1 171509755 171509755 A T PRRC2C Silent p.V1048V 0.15 TCGA-EE-A29M-06 1 171605543 171605543 C T MYOC Missense_Mutation p.R346K 0.45 tolerated(0.34) benign(0.152) TCGA-EE-A29M-06 1 172628510 172628510 C T FASLG Missense_Mutation p.P57S 0.45 tolerated(0.24) benign(0.003) TCGA-EE-A29M-06 1 173542434 173542434 T C SLC9C2 Silent p.E311E 0.43 TCGA-EE-A29M-06 1 17380561 17380561 C T SDHB 5'UTR 0.28 TCGA-EE-A29M-06 1 17601173 17601173 C T PADI3 Missense_Mutation p.S400F 0.30 deleterious(0.03) benign(0.192) TCGA-EE-A29M-06 1 176564535 176564535 G A PAPPA2 Missense_Mutation p.E599K 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 176659422 176659422 C T PAPPA2 Missense_Mutation p.P763S 0.35 deleterious(0.04) possibly_damaging(0.589) TCGA-EE-A29M-06 1 176863760 176863760 G A ASTN1 Silent p.L960L 0.25 TCGA-EE-A29M-06 1 177226312 177226312 G A BRINP2 Missense_Mutation p.G154E 0.15 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 1 177245506 177245506 G A BRINP2 Missense_Mutation p.M316I 0.27 deleterious(0.04) benign(0.005) TCGA-EE-A29M-06 1 177249596 177249596 G A BRINP2 Silent p.G428G 0.44 TCGA-EE-A29M-06 1 177249876 177249876 G A BRINP2 Missense_Mutation p.D522N 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 1 177250385 177250385 C T BRINP2 Silent p.P691P 0.24 TCGA-EE-A29M-06 1 177250692 177250692 G A BRINP2 3'UTR 0.26 TCGA-EE-A29M-06 1 177902403 177902403 G A SEC16B Silent p.T923T 0.28 TCGA-EE-A29M-06 1 178389739 178389739 C T RASAL2 Missense_Mutation p.R220C 0.49 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29M-06 1 179414159 179414159 G A AXDND1 Missense_Mutation p.D540N 0.23 deleterious(0) possibly_damaging(0.821) TCGA-EE-A29M-06 1 179620077 179620077 G A TDRD5 Missense_Mutation p.E626K 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29M-06 1 18023706 18023706 G A ARHGEF10L Missense_Mutation p.R1224Q 0.30 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A29M-06 1 180897377 180897377 C T KIAA1614 Intron 0.33 TCGA-EE-A29M-06 1 18152389 18152389 C T ACTL8 Missense_Mutation p.P159L 0.32 deleterious(0) probably_damaging(0.974) TCGA-EE-A29M-06 1 181680125 181680125 G A CACNA1E Missense_Mutation p.R364Q 0.23 deleterious(0) benign(0.238) TCGA-EE-A29M-06 1 181687205 181687205 C T CACNA1E Silent p.L514L 0.26 TCGA-EE-A29M-06 1 181702150 181702150 G A CACNA1E Silent p.E976E 0.20 TCGA-EE-A29M-06 1 181732646 181732646 G A CACNA1E Nonsense_Mutation p.W1598* 0.24 TCGA-EE-A29M-06 1 182908646 182908646 T A SHCBP1L Missense_Mutation p.E271D 0.18 tolerated(0.25) possibly_damaging(0.523) TCGA-EE-A29M-06 1 183546757 183546757 G A NCF2 Nonsense_Mutation p.Q115* 0.24 TCGA-EE-A29M-06 1 184764306 184764306 C T FAM129A Silent p.E864E 0.23 TCGA-EE-A29M-06 1 185056719 185056719 C T RNF2 Missense_Mutation p.P12S 0.39 tolerated(0.22) benign(0.006) TCGA-EE-A29M-06 1 18807986 18807986 G A KLHDC7A Missense_Mutation p.G171R 0.23 tolerated(0.14) benign(0.015) TCGA-EE-A29M-06 1 18808729 18808729 C T KLHDC7A Silent p.I418I 0.39 TCGA-EE-A29M-06 1 18809344 18809344 C T KLHDC7A Silent p.F623F 0.25 TCGA-EE-A29M-06 1 190195259 190195259 C T BRINP3 Missense_Mutation p.R305Q 0.31 tolerated(0.89) benign(0.289) TCGA-EE-A29M-06 1 190250853 190250853 G A BRINP3 Silent p.N88N 0.29 TCGA-EE-A29M-06 1 190423983 190423983 G A BRINP3 Missense_Mutation p.S13F 0.28 tolerated_low_confidence(0.69) benign(0.038) TCGA-EE-A29M-06 1 196876504 196876504 C T CFHR4 Silent p.F224F 0.43 TCGA-EE-A29M-06 1 196918596 196918596 G A CFHR2 Missense_Mutation p.D24N 0.24 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A29M-06 1 197008366 197008366 G A F13B 3'UTR 0.29 TCGA-EE-A29M-06 1 197026446 197026446 C T F13B Missense_Mutation p.G319R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 197097687 197097687 G A ASPM Missense_Mutation p.P957S 0.25 deleterious(0.01) possibly_damaging(0.893) TCGA-EE-A29M-06 1 197390665 197390665 C T CRB1 Silent p.F569F 0.40 TCGA-EE-A29M-06 1 197390744 197390744 C T CRB1 Missense_Mutation p.P596S 0.24 tolerated(0.61) benign(0.032) TCGA-EE-A29M-06 1 197447026 197447026 C T CRB1 3'UTR 0.24 TCGA-EE-A29M-06 1 198685852 198685852 G A PTPRC Missense_Mutation p.D445N 0.27 tolerated(0.77) benign(0.001) TCGA-EE-A29M-06 1 198701611 198701611 G A PTPRC Missense_Mutation p.D690N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 198703337 198703337 C T PTPRC Missense_Mutation p.P719S 0.18 tolerated(0.12) probably_damaging(0.931) TCGA-EE-A29M-06 1 200818995 200818995 C T CAMSAP2 Missense_Mutation p.S1033F 0.21 tolerated(0.06) benign(0.21) TCGA-EE-A29M-06 1 200868714 200868714 C T C1orf106 Missense_Mutation p.L57F 0.27 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A29M-06 1 200948786 200948786 C T KIF21B Missense_Mutation p.G1346D 0.22 tolerated(0.15) probably_damaging(0.917) TCGA-EE-A29M-06 1 200960046 200960046 G A KIF21B Nonsense_Mutation p.R896* 0.35 TCGA-EE-A29M-06 1 200973971 200973971 C T KIF21B Missense_Mutation p.A275T 0.26 deleterious(0) possibly_damaging(0.457) TCGA-EE-A29M-06 1 201104908 201104908 G A TMEM9 Silent p.L145L 0.31 TCGA-EE-A29M-06 1 201185804 201185804 C T IGFN1 Missense_Mutation p.T3173I 0.43 benign(0.264) TCGA-EE-A29M-06 1 201869499 201869499 C T LMOD1 Silent p.V214V 0.30 TCGA-EE-A29M-06 1 202127303 202127303 G A PTPN7 Silent p.T188T 0.35 TCGA-EE-A29M-06 1 20248809 20248809 C T PLA2G2E Missense_Mutation p.E90K 0.30 tolerated(1) benign(0.002) TCGA-EE-A29M-06 1 203143639 203143639 G A MYBPH Silent p.L143L 0.23 TCGA-EE-A29M-06 1 203152894 203152894 G A CHI3L1 Nonsense_Mutation p.Q114* 0.26 TCGA-EE-A29M-06 1 203152895 203152895 G A CHI3L1 Silent p.T113T 0.26 TCGA-EE-A29M-06 1 203465352 203465352 C T OPTC Silent p.D73D 0.32 TCGA-EE-A29M-06 1 203676236 203676236 C T ATP2B4 Missense_Mutation p.P400L 0.25 tolerated(0.07) benign(0.077) TCGA-EE-A29M-06 1 203743453 203743453 G A LAX1 Missense_Mutation p.E281K 0.32 tolerated(0.19) probably_damaging(0.981) TCGA-EE-A29M-06 1 205027141 205027141 G A CNTN2 Missense_Mutation p.E55K 0.31 tolerated(0.47) possibly_damaging(0.481) TCGA-EE-A29M-06 1 205068906 205068906 G A RBBP5 Missense_Mutation p.S314F 0.28 deleterious(0) probably_damaging(0.991) TCGA-EE-A29M-06 1 205116799 205116799 G A DSTYK Missense_Mutation p.P893S 0.32 tolerated(0.11) possibly_damaging(0.654) TCGA-EE-A29M-06 1 205500561 205500561 C T CDK18 3'UTR 0.41 TCGA-EE-A29M-06 1 205589679 205589679 C T ELK4 Silent p.L165L 0.35 TCGA-EE-A29M-06 1 205593017 205593017 G A ELK4 Intron 0.40 TCGA-EE-A29M-06 1 205892219 205892219 C T SLC26A9 Missense_Mutation p.M588I 0.36 tolerated(0.2) benign(0.438) TCGA-EE-A29M-06 1 205897173 205897173 G A SLC26A9 Missense_Mutation p.P320S 0.14 tolerated(0.74) probably_damaging(0.994) TCGA-EE-A29M-06 1 206331149 206331149 G A CTSE Silent p.G385G 0.18 TCGA-EE-A29M-06 1 206648315 206648315 C T IKBKE Silent p.F112F 0.30 TCGA-EE-A29M-06 1 207131965 207131965 G T FCAMR Missense_Mutation p.P544T 0.17 deleterious(0.03) benign(0.009) TCGA-EE-A29M-06 1 207497975 207497975 C T CD55 Missense_Mutation p.P120S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 1 207758069 207758069 G A CR1 Missense_Mutation p.G1793E 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 1 207758173 207758173 G A CR1 Missense_Mutation p.G1828R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 207789919 207789919 G A CR1 Splice_Site p.X2221_splice 0.32 TCGA-EE-A29M-06 1 209878363 209878363 G A HSD11B1 Missense_Mutation p.E26K 0.37 tolerated(0.67) benign(0.001) TCGA-EE-A29M-06 1 21295998 21295998 C T EIF4G3 Missense_Mutation p.G179E 0.27 tolerated(0.08) probably_damaging(1) TCGA-EE-A29M-06 1 215916657 215916657 G A USH2A Missense_Mutation p.P3804S 0.38 probably_damaging(0.971) TCGA-EE-A29M-06 1 215972452 215972452 G A USH2A Missense_Mutation p.P3252L 0.55 benign(0.026) TCGA-EE-A29M-06 1 216107984 216107984 G C USH2A Missense_Mutation p.P2425R 0.20 benign(0.02) TCGA-EE-A29M-06 1 21880549 21880549 G A ALPL 5'UTR 0.23 TCGA-EE-A29M-06 1 220315142 220315142 C T IARS2 Intron 0.20 TCGA-EE-A29M-06 1 220964850 220964850 A G MARC1 Missense_Mutation p.N98S 0.21 tolerated(0.27) benign(0.023) TCGA-EE-A29M-06 1 222712039 222712039 C T HHIPL2 Missense_Mutation p.E510K 0.28 deleterious(0) probably_damaging(0.979) TCGA-EE-A29M-06 1 223284112 223284112 G A TLR5 Silent p.I754I 0.41 TCGA-EE-A29M-06 1 2237546 2237546 C T SKI Missense_Mutation p.L619F 0.35 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29M-06 1 225142737 225142737 G A DNAH14 Missense_Mutation p.E52K 0.29 tolerated(0.11) benign(0.238) TCGA-EE-A29M-06 1 225592349 225592349 G A LBR Missense_Mutation p.P515S 0.22 deleterious(0.04) possibly_damaging(0.888) TCGA-EE-A29M-06 1 227153028 227153028 C T ADCK3 Missense_Mutation p.P169S 0.22 tolerated(0.64) benign(0.001) TCGA-EE-A29M-06 1 22817085 22817085 C T ZBTB40 Missense_Mutation p.P215L 0.21 tolerated(0.26) benign(0.177) TCGA-EE-A29M-06 1 22817086 22817086 C T ZBTB40 Silent p.P215P 0.21 TCGA-EE-A29M-06 1 228334618 228334618 C T GUK1 Missense_Mutation p.S98L 0.21 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A29M-06 1 22838356 22838356 C T ZBTB40 Silent p.D730D 0.20 TCGA-EE-A29M-06 1 228491558 228491558 C T OBSCN Missense_Mutation p.R4641C 0.37 probably_damaging(0.973) TCGA-EE-A29M-06 1 228582482 228582482 G A TRIM11 Missense_Mutation p.P444L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 228871726 228871726 C T RHOU Silent p.I79I 0.37 TCGA-EE-A29M-06 1 22903352 22903352 G A EPHA8 Missense_Mutation p.E268K 0.20 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A29M-06 1 22915935 22915935 C T EPHA8 Intron 0.29 TCGA-EE-A29M-06 1 229568051 229568051 G A ACTA1 Silent p.I194I 0.25 TCGA-EE-A29M-06 1 229685161 229685161 T A ABCB10 Missense_Mutation p.M180L 0.50 tolerated(0.09) benign(0.002) TCGA-EE-A29M-06 1 23110979 23110979 G A EPHB2 Missense_Mutation p.R74Q 0.30 tolerated(0.17) probably_damaging(0.972) TCGA-EE-A29M-06 1 231155615 231155615 G A FAM89A Silent p.S183S 0.37 TCGA-EE-A29M-06 1 231349710 231349710 A G TRIM67 Missense_Mutation p.N758S 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 1 232561465 232561465 G A SIPA1L2 Silent p.S1500S 0.19 TCGA-EE-A29M-06 1 233160912 233160912 G A PCNXL2 Missense_Mutation p.L1529F 0.18 deleterious(0.03) benign(0.327) TCGA-EE-A29M-06 1 23356988 23356988 C T KDM1A Silent p.S126S 0.30 TCGA-EE-A29M-06 1 234041368 234041368 G A SLC35F3 Silent p.A49A 0.37 TCGA-EE-A29M-06 1 234367362 234367362 G A SLC35F3 Silent p.R161R 0.23 TCGA-EE-A29M-06 1 235392677 235392677 G A ARID4B Missense_Mutation p.H256Y 0.37 tolerated(1) possibly_damaging(0.745) TCGA-EE-A29M-06 1 235866213 235866213 A G LYST Missense_Mutation p.M3403T 0.22 deleterious(0) probably_damaging(0.977) TCGA-EE-A29M-06 1 236212240 236212240 G A NID1 Missense_Mutation p.S92F 0.24 deleterious(0.04) benign(0.003) TCGA-EE-A29M-06 1 236572530 236572530 G A EDARADD Missense_Mutation p.E26K 0.31 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 1 236645580 236645580 C T EDARADD Silent p.D93D 0.11 TCGA-EE-A29M-06 1 237777612 237777612 C T RYR2 Silent p.P1728P 0.35 TCGA-EE-A29M-06 1 237780760 237780760 G A RYR2 Missense_Mutation p.E1964K 0.32 probably_damaging(0.999) TCGA-EE-A29M-06 1 237791158 237791158 C T RYR2 Missense_Mutation p.S2073F 0.29 possibly_damaging(0.861) TCGA-EE-A29M-06 1 238048779 238048779 G A ZP4 Missense_Mutation p.P358S 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 1 240071338 240071338 C T CHRM3 Missense_Mutation p.S196F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 240256893 240256893 G A FMN2 Missense_Mutation p.R495Q 0.48 unknown(0) TCGA-EE-A29M-06 1 240656759 240656759 G A GREM2 Missense_Mutation p.S6F 0.48 tolerated_low_confidence(0.71) benign(0.049) TCGA-EE-A29M-06 1 241094032 241094032 C T RGS7 Missense_Mutation p.E124K 0.35 deleterious(0) probably_damaging(0.979) TCGA-EE-A29M-06 1 2415968 2415968 G A PLCH2 Missense_Mutation p.D216N 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 1 241886654 241886654 G A WDR64 Silent p.G360G 0.29 TCGA-EE-A29M-06 1 2419097 2419097 C T PLCH2 Missense_Mutation p.S365F 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A29M-06 1 24201076 24201076 C T CNR2 Silent p.G344G 0.25 TCGA-EE-A29M-06 1 24400740 24400740 C T MYOM3 Missense_Mutation p.E960K 0.28 tolerated(0.08) benign(0.097) TCGA-EE-A29M-06 1 24413234 24413234 C T MYOM3 Silent p.E566E 0.33 TCGA-EE-A29M-06 1 24433675 24433675 C T MYOM3 Missense_Mutation p.R97Q 0.17 tolerated(0.06) possibly_damaging(0.738) TCGA-EE-A29M-06 1 247150781 247150781 G A ZNF695 Missense_Mutation p.H346Y 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 1 247588768 247588768 C T NLRP3 Missense_Mutation p.R675W 0.17 deleterious(0.01) possibly_damaging(0.462) TCGA-EE-A29M-06 1 247737781 247737781 C T GCSAML 3'UTR 0.50 TCGA-EE-A29M-06 1 247921140 247921140 G A OR1C1 Missense_Mutation p.S190F 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 1 248004720 248004720 G A OR11L1 Missense_Mutation p.S160F 0.23 tolerated(0.38) possibly_damaging(0.541) TCGA-EE-A29M-06 1 248059118 248059118 C T OR2W3 Missense_Mutation p.S77F 0.39 deleterious(0.03) possibly_damaging(0.866) TCGA-EE-A29M-06 1 248128657 248128657 C T OR2AK2 Silent p.S8S 0.32 TCGA-EE-A29M-06 1 248201816 248201816 G A OR2L2 Missense_Mutation p.D83N 0.24 tolerated(1) benign(0.002) TCGA-EE-A29M-06 1 248202081 248202081 G A OR2L2 Missense_Mutation p.R171K 0.25 deleterious(0.03) benign(0.424) TCGA-EE-A29M-06 1 248344012 248344012 C T OR2M2 Missense_Mutation p.S242F 0.25 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A29M-06 1 248366886 248366886 G A OR2M3 Missense_Mutation p.E173K 0.28 tolerated(0.2) benign(0.12) TCGA-EE-A29M-06 1 248402872 248402872 C T OR2M4 Silent p.I214I 0.34 TCGA-EE-A29M-06 1 248458657 248458657 G A OR2T12 Missense_Mutation p.T75I 0.10 tolerated(1) benign(0.003) TCGA-EE-A29M-06 1 248551041 248551041 C T OR2T6 Silent p.V44V 0.20 TCGA-EE-A29M-06 1 248637182 248637182 G A OR2T3 Silent p.R177R 0.22 TCGA-EE-A29M-06 1 248756719 248756719 G A OR2T10 Silent p.A117A 0.42 TCGA-EE-A29M-06 1 25715541 25715541 G A RHCE Missense_Mutation p.P289S 0.23 tolerated(0.78) benign(0.002) TCGA-EE-A29M-06 1 27679920 27679920 G A SYTL1 Nonsense_Mutation p.W497* 0.25 TCGA-EE-A29M-06 1 27875278 27875278 G A AHDC1 Silent p.L1117L 0.21 TCGA-EE-A29M-06 1 27875279 27875279 G T AHDC1 Silent p.G1116G 0.22 TCGA-EE-A29M-06 1 29379626 29379626 C T EPB41 Silent p.V549V 0.24 TCGA-EE-A29M-06 1 2939071 2939071 C T ACTRT2 Missense_Mutation p.P274L 0.22 tolerated(0.11) benign(0.443) TCGA-EE-A29M-06 1 2939174 2939174 C T ACTRT2 Silent p.F308F 0.28 TCGA-EE-A29M-06 1 29647278 29647278 G A PTPRU Missense_Mutation p.D1267N 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 32628862 32628862 C A KPNA6 Missense_Mutation p.P313H 0.17 deleterious(0) probably_damaging(0.969) TCGA-EE-A29M-06 1 32691786 32691786 C T EIF3I Missense_Mutation p.L89F 0.21 tolerated(0.1) benign(0.071) TCGA-EE-A29M-06 1 32800251 32800251 G A MARCKSL1 Missense_Mutation p.P179S 0.16 tolerated(0.07) unknown(0) TCGA-EE-A29M-06 1 33291810 33291810 C T S100PBP Missense_Mutation p.S37F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 33292157 33292157 C T S100PBP Missense_Mutation p.P153S 0.22 tolerated(0.13) possibly_damaging(0.895) TCGA-EE-A29M-06 1 33736189 33736189 C T ZNF362 Missense_Mutation p.S5L 0.25 tolerated_low_confidence(0.25) benign(0.023) TCGA-EE-A29M-06 1 34066481 34066481 G A CSMD2 Silent p.F2282F 0.27 TCGA-EE-A29M-06 1 34076727 34076727 G A CSMD2 Missense_Mutation p.S2046F 0.27 tolerated(0.11) possibly_damaging(0.467) TCGA-EE-A29M-06 1 34090118 34090118 C T CSMD2 Splice_Site p.X1835_splice 0.28 TCGA-EE-A29M-06 1 35480350 35480350 G A ZMYM6 Missense_Mutation p.P248L 0.24 tolerated(0.18) possibly_damaging(0.549) TCGA-EE-A29M-06 1 35579545 35579545 G A ZMYM1 Missense_Mutation p.G705E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 1 35579937 35579937 C T ZMYM1 Missense_Mutation p.H836Y 0.18 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A29M-06 1 35926016 35926016 G A KIAA0319L Silent p.I439I 0.24 TCGA-EE-A29M-06 1 36228884 36228884 A T CLSPN Nonsense_Mutation p.C207* 0.30 TCGA-EE-A29M-06 1 36564614 36564614 C T COL8A2 Missense_Mutation p.G223D 0.33 deleterious(0) unknown(0) TCGA-EE-A29M-06 1 36785831 36785831 G A SH3D21 Missense_Mutation p.D523N 0.27 tolerated(0.38) benign(0.066) TCGA-EE-A29M-06 1 3753955 3753955 G A CEP104 Silent p.F340F 0.25 TCGA-EE-A29M-06 1 38181704 38181704 C T EPHA10 3'UTR 0.23 TCGA-EE-A29M-06 1 39750861 39750861 C T MACF1 Missense_Mutation p.S418L 0.31 benign(0.004) TCGA-EE-A29M-06 1 39753131 39753131 G A MACF1 Missense_Mutation p.R566Q 0.29 possibly_damaging(0.861) TCGA-EE-A29M-06 1 39818781 39818781 C T MACF1 Missense_Mutation p.L1706F 0.23 benign(0.008) TCGA-EE-A29M-06 1 39988140 39988140 G A BMP8A Missense_Mutation p.D312N 0.24 deleterious(0) probably_damaging(0.964) TCGA-EE-A29M-06 1 40226028 40226028 C T BMP8B 3'UTR 0.37 TCGA-EE-A29M-06 1 41236585 41236585 G A NFYC 3'UTR 0.21 TCGA-EE-A29M-06 1 41236586 41236586 G A NFYC 3'UTR 0.23 TCGA-EE-A29M-06 1 41579192 41579192 G A SCMH1 Missense_Mutation p.P160S 0.23 deleterious(0.01) benign(0.19) TCGA-EE-A29M-06 1 42046371 42046371 C T HIVEP3 Silent p.T1366T 0.22 TCGA-EE-A29M-06 1 42621312 42621312 C T GUCA2B 3'UTR 0.27 TCGA-EE-A29M-06 1 43396351 43396351 C T SLC2A1 Silent p.G154G 0.26 TCGA-EE-A29M-06 1 43675583 43675583 C T WDR65 Missense_Mutation p.T642I 0.23 deleterious(0.03) benign(0.382) TCGA-EE-A29M-06 1 43748497 43748497 C T C1orf210 Missense_Mutation p.E101K 0.24 tolerated(1) benign(0.242) TCGA-EE-A29M-06 1 43778085 43778085 C T TIE1 Silent p.F580F 0.29 TCGA-EE-A29M-06 1 44084328 44084328 C T PTPRF Missense_Mutation p.R1467C 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 1 46976664 46976664 G A DMBX1 Missense_Mutation p.E131K 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29M-06 1 47514238 47514238 G A CYP4X1 Silent p.G403G 0.29 TCGA-EE-A29M-06 1 47716976 47716976 G A STIL Silent p.T1233T 0.25 TCGA-EE-A29M-06 1 4832398 4832398 G A AJAP1 Missense_Mutation p.E326K 0.33 deleterious(0) possibly_damaging(0.486) TCGA-EE-A29M-06 1 50666695 50666695 C T ELAVL4 Missense_Mutation p.R333C 0.27 deleterious(0.02) possibly_damaging(0.586) TCGA-EE-A29M-06 1 52293523 52293523 G A NRD1 Silent p.I363I 0.33 TCGA-EE-A29M-06 1 53153720 53153720 A C COA7 Missense_Mutation p.V123G 0.27 tolerated(0.35) benign(0.035) TCGA-EE-A29M-06 1 54640376 54640376 G A CYB5RL Silent p.V288V 0.25 TCGA-EE-A29M-06 1 55158216 55158216 G A MROH7 Missense_Mutation p.G944E 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 1 55474209 55474209 G A BSND Missense_Mutation p.E291K 0.25 deleterious(0.05) benign(0.109) TCGA-EE-A29M-06 1 55474374 55474374 C T BSND 3'UTR 0.29 TCGA-EE-A29M-06 1 55598327 55598327 G A USP24 Missense_Mutation p.S1143F 0.46 deleterious(0.03) possibly_damaging(0.597) TCGA-EE-A29M-06 1 57170073 57170073 C T PRKAA2 Silent p.I406I 0.25 TCGA-EE-A29M-06 1 57170074 57170074 C T PRKAA2 Nonsense_Mutation p.R407* 0.24 TCGA-EE-A29M-06 1 57233561 57233561 G A C1orf168 Missense_Mutation p.S335L 0.23 deleterious(0) probably_damaging(0.978) TCGA-EE-A29M-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.24 TCGA-EE-A29M-06 1 57425832 57425832 G A C8B Missense_Mutation p.S37F 0.18 tolerated(0.73) benign(0.004) TCGA-EE-A29M-06 1 57480957 57480957 G A DAB1 Missense_Mutation p.P348L 0.23 deleterious(0) benign(0.067) TCGA-EE-A29M-06 1 57602291 57602291 G A DAB1 Silent p.S77S 0.19 TCGA-EE-A29M-06 1 57611094 57611094 G A DAB1 Missense_Mutation p.R26C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 1 60314051 60314051 G A HOOK1 Missense_Mutation p.D332N 0.19 tolerated(0.09) benign(0.204) TCGA-EE-A29M-06 1 6172243 6172243 C T CHD5 Silent p.G1699G 0.24 TCGA-EE-A29M-06 1 6185624 6185624 G A CHD5 Missense_Mutation p.P1407L 0.44 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A29M-06 1 62235066 62235066 G A INADL Missense_Mutation p.D166N 0.22 deleterious(0) benign(0.12) TCGA-EE-A29M-06 1 62330129 62330129 G A INADL Missense_Mutation p.E887K 0.28 tolerated(0.49) benign(0.066) TCGA-EE-A29M-06 1 62672511 62672511 G A L1TD1 Missense_Mutation p.E71K 0.23 deleterious(0.01) unknown(0) TCGA-EE-A29M-06 1 62675887 62675887 G A L1TD1 Missense_Mutation p.E481K 0.28 tolerated(0.2) benign(0.19) TCGA-EE-A29M-06 1 62703961 62703961 G A KANK4 Silent p.S992S 0.31 TCGA-EE-A29M-06 1 62703962 62703962 G A KANK4 Missense_Mutation p.S992F 0.32 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A29M-06 1 63021546 63021546 A G DOCK7 Missense_Mutation p.I849T 0.31 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A29M-06 1 64125271 64125271 C T PGM1 Silent p.P556P 0.30 TCGA-EE-A29M-06 1 64125272 64125272 C A PGM1 Missense_Mutation p.L557I 0.30 deleterious(0.02) possibly_damaging(0.885) TCGA-EE-A29M-06 1 67666433 67666433 G A IL23R Missense_Mutation p.E169K 0.19 deleterious(0.01) benign(0.017) TCGA-EE-A29M-06 1 68910481 68910481 G A RPE65 Missense_Mutation p.P111S 0.28 deleterious(0) probably_damaging(0.914) TCGA-EE-A29M-06 1 70501887 70501887 A C LRRC7 Missense_Mutation p.K655N 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 1 72241978 72241978 G A NEGR1 Missense_Mutation p.P138S 0.22 tolerated(0.23) benign(0.281) TCGA-EE-A29M-06 1 74621525 74621525 T A LRRIQ3 Missense_Mutation p.N200I 0.35 deleterious(0) benign(0.298) TCGA-EE-A29M-06 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.19 tolerated(0.4) possibly_damaging(0.703) TCGA-EE-A29M-06 1 75672358 75672358 G A SLC44A5 Silent p.F698F 0.36 TCGA-EE-A29M-06 1 76355016 76355016 G A MSH4 Missense_Mutation p.E730K 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 1 77510144 77510144 C T ST6GALNAC5 Missense_Mutation p.P173S 0.30 probably_damaging(1) TCGA-EE-A29M-06 1 7890145 7890145 C T PER3 Silent p.S1037S 0.27 TCGA-EE-A29M-06 1 79403621 79403621 C T ELTD1 Missense_Mutation p.D211N 0.15 tolerated(0.65) benign(0.006) TCGA-EE-A29M-06 1 85488097 85488097 G A MCOLN3 Intron 0.16 TCGA-EE-A29M-06 1 85742110 85742110 C T BCL10 5'UTR 0.64 TCGA-EE-A29M-06 1 86306910 86306910 C T COL24A1 Missense_Mutation p.E1208K 0.49 deleterious(0.04) possibly_damaging(0.886) TCGA-EE-A29M-06 1 86557961 86557961 G A COL24A1 Missense_Mutation p.P548S 0.16 tolerated(0.94) benign(0.003) TCGA-EE-A29M-06 1 86898134 86898134 A T CLCA2 Nonsense_Mutation p.K223* 0.49 TCGA-EE-A29M-06 1 89237436 89237436 C T PKN2 Missense_Mutation p.P287S 0.18 deleterious(0.04) possibly_damaging(0.588) TCGA-EE-A29M-06 1 89582689 89582689 G A GBP2 Missense_Mutation p.P285L 0.36 tolerated(0.3) benign(0) TCGA-EE-A29M-06 1 90049685 90049685 C T LRRC8B Silent p.L492L 0.40 TCGA-EE-A29M-06 1 92445249 92445249 G A BRDT Missense_Mutation p.E408K 0.19 deleterious(0.04) benign(0.127) TCGA-EE-A29M-06 1 92755792 92755792 G A GLMN Silent p.S119S 0.48 TCGA-EE-A29M-06 1 94474416 94474416 G A ABCA4 Missense_Mutation p.P1909L 0.48 tolerated(0.44) benign(0.065) TCGA-EE-A29M-06 1 97544468 97544468 G A DPYD 3'UTR 0.30 TCGA-EE-A29M-06 1 97564103 97564103 G A DPYD Missense_Mutation p.A903V 0.45 tolerated(0.21) benign(0) TCGA-EE-A29M-06 1 98165025 98165025 C G DPYD Missense_Mutation p.A188P 0.17 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A29M-06 20 16407881 16407881 G A KIF16B Missense_Mutation p.H494Y 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A29M-06 20 16729070 16729070 C T OTOR Silent p.F8F 0.29 TCGA-EE-A29M-06 20 18296038 18296038 C T ZNF133 Silent p.L180L 0.30 TCGA-EE-A29M-06 20 20232323 20232323 C T C20orf26 Silent p.D748D 0.35 TCGA-EE-A29M-06 20 20563868 20563868 C T RALGAPA2 Missense_Mutation p.E845K 0.27 tolerated(0.29) benign(0.03) TCGA-EE-A29M-06 20 22563277 22563277 G A FOXA2 Silent p.F201F 0.25 TCGA-EE-A29M-06 20 23731432 23731432 C T CST1 Silent p.K24K 0.23 TCGA-EE-A29M-06 20 2375243 2375243 G A TGM6 Silent p.E51E 0.30 TCGA-EE-A29M-06 20 2411557 2411557 G A TGM6 Missense_Mutation p.M617I 0.28 tolerated(0.53) benign(0.005) TCGA-EE-A29M-06 20 24646213 24646213 G A SYNDIG1 3'UTR 0.22 TCGA-EE-A29M-06 20 30408016 30408016 C T MYLK2 Missense_Mutation p.P47L 0.30 deleterious_low_confidence(0) benign(0.011) TCGA-EE-A29M-06 20 30458411 30458411 C T DUSP15 5'UTR 0.29 TCGA-EE-A29M-06 20 31814248 31814248 C T BPIFA3 Silent p.N191N 0.33 TCGA-EE-A29M-06 20 32663680 32663680 G A RALY Silent p.R126R 0.28 TCGA-EE-A29M-06 20 33513985 33513985 C T ACSS2 Missense_Mutation p.H615Y 0.27 tolerated(1) benign(0.001) TCGA-EE-A29M-06 20 33567524 33567524 G A MYH7B Missense_Mutation p.E129K 0.30 probably_damaging(0.944) TCGA-EE-A29M-06 20 33568445 33568445 C T MYH7B Missense_Mutation p.S178F 0.24 benign(0.182) TCGA-EE-A29M-06 20 35075302 35075302 C T DLGAP4 Missense_Mutation p.P537L 0.17 tolerated(0.25) benign(0.061) TCGA-EE-A29M-06 20 35431485 35431485 G A SOGA1 Missense_Mutation p.A1038V 0.33 tolerated(0.64) benign(0.013) TCGA-EE-A29M-06 20 35879598 35879598 G A GHRH 3'UTR 0.29 TCGA-EE-A29M-06 20 3655422 3655422 C T ADAM33 Missense_Mutation p.M136I 0.28 tolerated(0.7) benign(0.05) TCGA-EE-A29M-06 20 36560103 36560103 C T VSTM2L Missense_Mutation p.S63F 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 20 3734661 3734661 G A C20orf27 3'UTR 0.33 TCGA-EE-A29M-06 20 40944528 40944528 G A PTPRT Silent p.L658L 0.28 TCGA-EE-A29M-06 20 41400150 41400150 C T PTPRT Silent p.V203V 0.24 TCGA-EE-A29M-06 20 42635286 42635286 G A TOX2 Missense_Mutation p.E89K 0.23 tolerated(0.11) benign(0.15) TCGA-EE-A29M-06 20 42694607 42694607 C T TOX2 Silent p.L406L 0.33 TCGA-EE-A29M-06 20 43029939 43029939 G A HNF4A 5'UTR 0.38 TCGA-EE-A29M-06 20 43379087 43379087 G A KCNK15 Missense_Mutation p.G201S 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A29M-06 20 43850988 43850988 C T SEMG2 Missense_Mutation p.H239Y 0.32 tolerated(1) possibly_damaging(0.592) TCGA-EE-A29M-06 20 43851542 43851542 G A SEMG2 Silent p.K423K 0.34 TCGA-EE-A29M-06 20 44430653 44430653 C T DNTTIP1 Missense_Mutation p.P172S 0.24 deleterious(0.02) benign(0.042) TCGA-EE-A29M-06 20 46282356 46282356 C T NCOA3 3'UTR 0.48 TCGA-EE-A29M-06 20 47686748 47686748 C T CSE1L Missense_Mutation p.P228S 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 20 47850127 47850127 C T DDX27 Missense_Mutation p.S416F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 20 49225247 49225247 C T FAM65C Nonsense_Mutation p.W234* 0.29 TCGA-EE-A29M-06 20 51870393 51870393 C T TSHZ2 Silent p.I132I 0.28 TCGA-EE-A29M-06 20 51871900 51871900 C T TSHZ2 Missense_Mutation p.R635C 0.31 deleterious(0.04) benign(0) TCGA-EE-A29M-06 20 51871953 51871953 G A TSHZ2 Silent p.K652K 0.20 TCGA-EE-A29M-06 20 51872320 51872320 G A TSHZ2 Missense_Mutation p.A775T 0.29 tolerated(0.39) benign(0.006) TCGA-EE-A29M-06 20 51872956 51872956 G A TSHZ2 Missense_Mutation p.E987K 0.32 deleterious(0) possibly_damaging(0.823) TCGA-EE-A29M-06 20 52601869 52601869 G A BCAS1 Missense_Mutation p.S366L 0.22 deleterious(0.01) benign(0.311) TCGA-EE-A29M-06 20 5294770 5294770 C T PROKR2 Silent p.K82K 0.26 TCGA-EE-A29M-06 20 55033727 55033727 C T CASS4 Missense_Mutation p.A762V 0.24 tolerated(0.11) possibly_damaging(0.589) TCGA-EE-A29M-06 20 57767866 57767866 G A ZNF831 Missense_Mutation p.G598S 0.27 tolerated(0.46) benign(0.003) TCGA-EE-A29M-06 20 57829536 57829536 C T ZNF831 Missense_Mutation p.P1591L 0.24 deleterious(0.03) benign(0.066) TCGA-EE-A29M-06 20 57829649 57829649 C T ZNF831 Missense_Mutation p.P1629S 0.23 tolerated(0.25) benign(0.141) TCGA-EE-A29M-06 20 58381164 58381164 G A PHACTR3 Missense_Mutation p.E415K 0.27 deleterious(0) probably_damaging(0.978) TCGA-EE-A29M-06 20 58558072 58558072 C T CDH26 Missense_Mutation p.P163L 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 20 58564175 58564175 C T CDH26 Silent p.L414L 0.27 TCGA-EE-A29M-06 20 58883550 58883550 G A MIR646 RNA 0.35 TCGA-EE-A29M-06 20 60574056 60574056 G A TAF4 Silent p.L966L 0.29 TCGA-EE-A29M-06 20 60909353 60909353 C A LAMA5 Silent p.L876L 0.19 TCGA-EE-A29M-06 20 60909354 60909354 A T LAMA5 Missense_Mutation p.L876Q 0.19 possibly_damaging(0.459) TCGA-EE-A29M-06 20 6100135 6100135 C T FERMT1 Missense_Mutation p.E23K 0.34 tolerated(0.81) benign(0.002) TCGA-EE-A29M-06 20 61467656 61467656 C T COL9A3 Missense_Mutation p.P507S 0.27 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A29M-06 20 61525489 61525489 G A DIDO1 Missense_Mutation p.S877F 0.22 possibly_damaging(0.701) TCGA-EE-A29M-06 20 61939428 61939428 G A COL20A1 Missense_Mutation p.G254E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 20 62195150 62195150 G A HELZ2 Silent p.I1675I 0.30 TCGA-EE-A29M-06 20 62904952 62904952 A T PCMTD2 Nonstop_Mutation p.*362Lext*25 0.24 TCGA-EE-A29M-06 20 8630085 8630085 C T PLCB1 Missense_Mutation p.P195S 0.34 tolerated(0.1) benign(0.044) TCGA-EE-A29M-06 20 8665694 8665694 C T PLCB1 Silent p.F326F 0.27 TCGA-EE-A29M-06 20 8714011 8714011 G A PLCB1 Missense_Mutation p.G672E 0.29 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A29M-06 20 8769290 8769290 G A PLCB1 Missense_Mutation p.E1067K 0.25 deleterious(0.02) benign(0.41) TCGA-EE-A29M-06 20 8782748 8782748 C T PLCB1 Intron 0.33 TCGA-EE-A29M-06 20 9376218 9376218 C T PLCB4 Missense_Mutation p.S488F 0.25 deleterious(0.05) benign(0.081) TCGA-EE-A29M-06 20 9449219 9449219 G A PLCB4 Missense_Mutation p.E1072K 0.33 deleterious(0.02) possibly_damaging(0.544) TCGA-EE-A29M-06 20 9457375 9457375 C T PLCB4 Silent p.S1157S 0.19 TCGA-EE-A29M-06 20 9510442 9510442 G A LAMP5 Missense_Mutation p.R273K 0.13 deleterious(0) benign(0.174) TCGA-EE-A29M-06 20 9560930 9560930 C T PAK7 Silent p.Q284Q 0.27 TCGA-EE-A29M-06 21 10862794 10862794 G A IGHV1OR21-1 Silent p.V30V 0.09 TCGA-EE-A29M-06 21 10862961 10862961 G A IGHV1OR21-1 Missense_Mutation p.R86K 0.17 tolerated(0.45) possibly_damaging(0.772) TCGA-EE-A29M-06 21 10863066 10863066 G A IGHV1OR21-1 Silent p.%3D 0.17 TCGA-EE-A29M-06 21 10944679 10944679 C T TPTE Silent p.R185R 0.11 TCGA-EE-A29M-06 21 10998260 10998260 C T TPTE RNA 0.19 TCGA-EE-A29M-06 21 11039138 11039138 G A BAGE2 RNA 0.04 TCGA-EE-A29M-06 21 15561499 15561499 G A LIPI Silent p.F117F 0.28 TCGA-EE-A29M-06 21 19716332 19716332 C T TMPRSS15 Missense_Mutation p.R406Q 0.28 tolerated(0.06) benign(0.087) TCGA-EE-A29M-06 21 22652919 22652919 C T NCAM2 Missense_Mutation p.S26L 0.34 tolerated(0.28) probably_damaging(0.999) TCGA-EE-A29M-06 21 31654319 31654319 G A KRTAP24-1 3'UTR 0.40 TCGA-EE-A29M-06 21 31654514 31654514 C T KRTAP24-1 Missense_Mutation p.S246N 0.29 deleterious(0.04) possibly_damaging(0.483) TCGA-EE-A29M-06 21 31692313 31692313 C T KRTAP26-1 Missense_Mutation p.G14E 0.20 tolerated(0.1) possibly_damaging(0.46) TCGA-EE-A29M-06 21 31802664 31802664 C T KRTAP13-4 Missense_Mutation p.S24F 0.26 deleterious(0.03) benign(0.247) TCGA-EE-A29M-06 21 33074204 33074204 G A SCAF4 Missense_Mutation p.S162F 0.28 benign(0.407) TCGA-EE-A29M-06 21 34635620 34635620 G A IFNAR2 Missense_Mutation p.E455K 0.27 deleterious(0.04) benign(0.332) TCGA-EE-A29M-06 21 35186232 35186232 G A ITSN1 Silent p.T861T 0.22 TCGA-EE-A29M-06 21 35468784 35468784 C T SLC5A3 Silent p.I429I 0.26 TCGA-EE-A29M-06 21 38524310 38524310 C T TTC3 Silent p.P798P 0.23 TCGA-EE-A29M-06 21 41301141 41301141 C T PCP4 3'UTR 0.25 TCGA-EE-A29M-06 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.21 tolerated(0.11) probably_damaging(0.993) TCGA-EE-A29M-06 21 41725649 41725649 G A DSCAM Missense_Mutation p.S226F 0.39 deleterious(0.04) possibly_damaging(0.652) TCGA-EE-A29M-06 21 42694869 42694869 C T FAM3B Silent p.F13F 0.23 TCGA-EE-A29M-06 21 43176946 43176946 C T RIPK4 Silent p.K71K 0.27 TCGA-EE-A29M-06 21 43505421 43505421 G A UMODL1 Missense_Mutation p.G168S 0.21 tolerated(0.82) probably_damaging(0.96) TCGA-EE-A29M-06 21 43547287 43547287 G A UMODL1 Silent p.T1283T 0.19 TCGA-EE-A29M-06 21 43783485 43783485 C T TFF1 Silent p.Q39Q 0.25 TCGA-EE-A29M-06 21 45096182 45096182 C T RRP1B Silent p.I193I 0.33 TCGA-EE-A29M-06 21 45522656 45522656 C T TRAPPC10 Intron 0.31 TCGA-EE-A29M-06 21 45679415 45679415 G A DNMT3L Silent p.A83A 0.29 TCGA-EE-A29M-06 21 45833845 45833845 G A TRPM2 Missense_Mutation p.D1012N 0.23 tolerated(0.86) benign(0.044) TCGA-EE-A29M-06 21 45949736 45949736 G A TSPEAR Silent p.V245V 0.19 TCGA-EE-A29M-06 21 45949744 45949744 G A TSPEAR Missense_Mutation p.P243S 0.29 deleterious(0) probably_damaging(0.94) TCGA-EE-A29M-06 21 45949818 45949818 A T TSPEAR Missense_Mutation p.V218D 0.20 deleterious(0) possibly_damaging(0.475) TCGA-EE-A29M-06 21 46047078 46047078 C T KRTAP10-9 5'UTR 0.32 TCGA-EE-A29M-06 21 46067169 46067169 C T KRTAP10-11 Missense_Mutation p.S265F 0.28 deleterious(0) benign(0.055) TCGA-EE-A29M-06 21 46086797 46086797 G A KRTAP12-2 Missense_Mutation p.H3Y 0.31 deleterious(0.02) unknown(0) TCGA-EE-A29M-06 21 46876046 46876046 C T COL18A1 Missense_Mutation p.P201L 0.18 unknown(0) TCGA-EE-A29M-06 21 46900645 46900645 C T COL18A1 Missense_Mutation p.P675L 0.29 possibly_damaging(0.851) TCGA-EE-A29M-06 21 46916462 46916462 A T COL18A1 Missense_Mutation p.T1033S 0.25 benign(0.099) TCGA-EE-A29M-06 21 46916463 46916463 C T COL18A1 Missense_Mutation p.T1033I 0.26 benign(0.312) TCGA-EE-A29M-06 21 46945797 46945797 G A SLC19A1 Silent p.I409I 0.31 TCGA-EE-A29M-06 21 47531470 47531470 C T COL6A2 Missense_Mutation p.S27L 0.30 tolerated(0.22) benign(0.001) TCGA-EE-A29M-06 21 47542846 47542846 G A COL6A2 Missense_Mutation p.E556K 0.25 deleterious(0.01) benign(0.281) TCGA-EE-A29M-06 21 47574103 47574103 G A FTCD Silent p.A66A 0.21 TCGA-EE-A29M-06 21 47860833 47860833 G A PCNT Silent p.K3153K 0.22 TCGA-EE-A29M-06 21 47918537 47918537 C T DIP2A Missense_Mutation p.P149L 0.27 tolerated(0.26) possibly_damaging(0.57) TCGA-EE-A29M-06 21 47918538 47918538 C T DIP2A Silent p.P149P 0.27 TCGA-EE-A29M-06 21 47961709 47961709 C T DIP2A Silent p.L693L 0.28 TCGA-EE-A29M-06 22 17445691 17445691 C T GAB4 Missense_Mutation p.D481N 0.31 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A29M-06 22 18653649 18653649 C T USP18 Missense_Mutation p.L285F 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A29M-06 22 19119041 19119041 C T TSSK2 Silent p.I43I 0.33 TCGA-EE-A29M-06 22 19346879 19346879 G A HIRA Silent p.I738I 0.25 TCGA-EE-A29M-06 22 19375274 19375274 G A HIRA Missense_Mutation p.S358F 0.35 deleterious(0) probably_damaging(0.931) TCGA-EE-A29M-06 22 22599708 22599708 G A VPREB1 Missense_Mutation p.E133K 0.24 tolerated(0.44) probably_damaging(0.945) TCGA-EE-A29M-06 22 22663112 22663112 C T BMS1P20 RNA 0.20 TCGA-EE-A29M-06 22 22673378 22673378 C T IGLV5-52 Silent p.Y57Y 0.35 TCGA-EE-A29M-06 22 22749605 22749605 C T IGLV7-43 Silent p.S43S 0.44 TCGA-EE-A29M-06 22 23011051 23011051 G A IGLV3-27 Silent p.R38R 0.22 TCGA-EE-A29M-06 22 23101590 23101590 C T IGLV2-14 Missense_Mutation p.R82C 0.23 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-EE-A29M-06 22 23165656 23165656 C T IGLV2-8 Missense_Mutation p.P76L 0.37 deleterious_low_confidence(0) benign(0.361) TCGA-EE-A29M-06 22 24580798 24580798 C T SUSD2 Silent p.I224I 0.36 TCGA-EE-A29M-06 22 24938898 24938898 G A GUCD1 3'UTR 0.22 TCGA-EE-A29M-06 22 24982039 24982039 G A FAM211B Silent p.L255L 0.35 TCGA-EE-A29M-06 22 25264407 25264407 C T SGSM1 Silent p.F353F 0.26 TCGA-EE-A29M-06 22 25294347 25294347 G A SGSM1 Missense_Mutation p.D866N 0.32 tolerated(0.39) benign(0.011) TCGA-EE-A29M-06 22 25320226 25320226 G A SGSM1 Silent p.L1144L 0.30 TCGA-EE-A29M-06 22 25620957 25620957 G A CRYBB2 Missense_Mutation p.E43K 0.24 deleterious(0) possibly_damaging(0.503) TCGA-EE-A29M-06 22 26164563 26164563 G A MYO18B Missense_Mutation p.G227E 0.28 tolerated_low_confidence(0.26) benign(0.006) TCGA-EE-A29M-06 22 26299772 26299772 G A MYO18B Missense_Mutation p.E1708K 0.29 tolerated(0.21) benign(0.059) TCGA-EE-A29M-06 22 26348303 26348303 C T MYO18B Nonsense_Mutation p.R1962* 0.27 TCGA-EE-A29M-06 22 26688910 26688910 G A SEZ6L Silent p.V211V 0.20 TCGA-EE-A29M-06 22 26877845 26877845 G A HPS4 5'UTR 0.22 TCGA-EE-A29M-06 22 29656093 29656093 C T RHBDD3 Missense_Mutation p.G373R 0.27 deleterious(0.02) benign(0.398) TCGA-EE-A29M-06 22 29881755 29881755 G A NEFH Nonsense_Mutation p.W376* 0.17 TCGA-EE-A29M-06 22 30500398 30500398 G A HORMAD2 Missense_Mutation p.G89D 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 22 30855936 30855936 G A SEC14L3 3'UTR 0.13 TCGA-EE-A29M-06 22 31331110 31331110 A C MORC2 Silent p.P555P 0.21 TCGA-EE-A29M-06 22 32302432 32302432 G A DEPDC5 Silent p.L1578L 0.20 TCGA-EE-A29M-06 22 32587002 32587002 G A RFPL2 Silent p.F298F 0.30 TCGA-EE-A29M-06 22 35728996 35728996 C T TOM1 Nonsense_Mutation p.Q308* 0.27 TCGA-EE-A29M-06 22 36123097 36123097 G A APOL5 Missense_Mutation p.E328K 0.26 deleterious(0.03) possibly_damaging(0.849) TCGA-EE-A29M-06 22 36960801 36960801 G A CACNG2 Missense_Mutation p.A190V 0.21 deleterious(0) probably_damaging(0.973) TCGA-EE-A29M-06 22 37213031 37213031 G A PVALB Silent p.L7L 0.27 TCGA-EE-A29M-06 22 37213032 37213032 C T PVALB Silent p.L6L 0.26 TCGA-EE-A29M-06 22 37771275 37771275 C T ELFN2 Silent p.L100L 0.40 TCGA-EE-A29M-06 22 38119785 38119785 C T TRIOBP Nonsense_Mutation p.Q408* 0.39 TCGA-EE-A29M-06 22 38131052 38131052 G A TRIOBP Missense_Mutation p.G1570E 0.22 tolerated_low_confidence(0.84) benign(0.03) TCGA-EE-A29M-06 22 38323469 38323469 C T MICALL1 Missense_Mutation p.S506L 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29M-06 22 38525490 38525490 G A PLA2G6 Missense_Mutation p.P386L 0.36 deleterious(0) possibly_damaging(0.847) TCGA-EE-A29M-06 22 38627283 38627283 G A TMEM184B Missense_Mutation p.S139F 0.36 deleterious(0.01) benign(0.389) TCGA-EE-A29M-06 22 39067069 39067069 C T CBY1 Intron 0.40 TCGA-EE-A29M-06 22 39884213 39884213 C T MGAT3 Silent p.I287I 0.24 TCGA-EE-A29M-06 22 40066861 40066861 C T CACNA1I Missense_Mutation p.H1481Y 0.19 deleterious(0.01) benign(0.006) TCGA-EE-A29M-06 22 40362074 40362074 C T GRAP2 Missense_Mutation p.S124F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 22 42172184 42172184 G A MEI1 Missense_Mutation p.D875N 0.29 tolerated(0.14) benign(0.426) TCGA-EE-A29M-06 22 42377782 42377782 C T SEPT3 Silent p.I48I 0.39 TCGA-EE-A29M-06 22 42422814 42422814 C T WBP2NL Missense_Mutation p.P187S 0.25 tolerated(0.29) benign(0.024) TCGA-EE-A29M-06 22 43036159 43036159 G A ATP5L2 Missense_Mutation p.P41L 0.33 deleterious(0.01) possibly_damaging(0.568) TCGA-EE-A29M-06 22 44063083 44063083 G A EFCAB6 Silent p.F628F 0.27 TCGA-EE-A29M-06 22 44068144 44068144 G A EFCAB6 Silent p.F487F 0.27 TCGA-EE-A29M-06 22 44229612 44229612 C T SULT4A1 Missense_Mutation p.G171S 0.43 tolerated(0.46) benign(0.063) TCGA-EE-A29M-06 22 44323028 44323028 C G PNPLA3 Missense_Mutation p.S134C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 22 44323029 44323029 C T PNPLA3 Silent p.S134S 0.26 TCGA-EE-A29M-06 22 45312200 45312200 C T PHF21B Missense_Mutation p.S175N 0.42 deleterious(0.02) possibly_damaging(0.501) TCGA-EE-A29M-06 22 45802443 45802443 C T SMC1B Silent p.K171K 0.42 TCGA-EE-A29M-06 22 45960761 45960761 C T FBLN1 Intron 0.26 TCGA-EE-A29M-06 22 46318708 46318708 G A WNT7B 3'UTR 0.49 TCGA-EE-A29M-06 22 46631032 46631032 C T PPARA Missense_Mutation p.R388C 0.28 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A29M-06 22 46859931 46859931 G A CELSR1 Silent p.L1286L 0.41 TCGA-EE-A29M-06 22 50355389 50355389 C T PIM3 Silent p.S182S 0.38 TCGA-EE-A29M-06 22 50589166 50589166 C T MOV10L1 Silent p.I910I 0.36 TCGA-EE-A29M-06 22 50718204 50718229 TCCTGGAGTAACACGGAGGGGAGGCT AGGCA PLXNB2 Splice_Site p.X1415_splice 0.14 TCGA-EE-A29M-06 22 50869676 50869676 C T PPP6R2 Silent p.S401S 0.39 TCGA-EE-A29M-06 22 51063591 51063591 G A ARSA Silent p.C504C 0.38 TCGA-EE-A29M-06 2 103340268 103340268 G A MFSD9 Silent p.S176S 0.35 TCGA-EE-A29M-06 2 108487311 108487311 G A RGPD4 Missense_Mutation p.D951N 0.23 tolerated(0.32) benign(0.05) TCGA-EE-A29M-06 2 108488581 108488581 G A RGPD4 Nonsense_Mutation p.W1374* 0.24 TCGA-EE-A29M-06 2 108626878 108626878 C T SLC5A7 Missense_Mutation p.A435V 0.31 deleterious(0) possibly_damaging(0.71) TCGA-EE-A29M-06 2 108627325 108627325 T C SLC5A7 3'UTR 0.39 TCGA-EE-A29M-06 2 10912037 10912037 C T ATP6V1C2 Silent p.L181L 0.11 TCGA-EE-A29M-06 2 109365373 109365373 C T RANBP2 Intron 0.28 TCGA-EE-A29M-06 2 110049062 110049062 G A SH3RF3 Silent p.K503K 0.32 TCGA-EE-A29M-06 2 111789230 111789230 C T ACOXL Silent p.F436F 0.27 TCGA-EE-A29M-06 2 111789261 111789261 G A ACOXL Missense_Mutation p.A447T 0.31 tolerated(0.85) benign(0.01) TCGA-EE-A29M-06 2 112751951 112751951 G A MERTK Missense_Mutation p.D474N 0.33 tolerated(0.47) benign(0.258) TCGA-EE-A29M-06 2 113509901 113509901 G A CKAP2L Silent p.L515L 0.25 TCGA-EE-A29M-06 2 113832845 113832845 C T IL1F10 Silent p.F121F 0.32 TCGA-EE-A29M-06 2 113940513 113940513 C T PSD4 Silent p.I160I 0.24 TCGA-EE-A29M-06 2 113958813 113958813 G A PSD4 Missense_Mutation p.E998K 0.31 tolerated(0.17) benign(0.035) TCGA-EE-A29M-06 2 114004339 114004339 G A PAX8 Silent p.I61I 0.25 TCGA-EE-A29M-06 2 116447276 116447276 C T DPP10 Missense_Mutation p.S156L 0.39 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 2 116548728 116548728 A T DPP10 Missense_Mutation p.I539F 0.33 tolerated(0.4) benign(0.001) TCGA-EE-A29M-06 2 116548887 116548887 C T DPP10 Missense_Mutation p.P556L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 11770145 11770145 C T GREB1 Silent p.F1507F 0.33 TCGA-EE-A29M-06 2 120194503 120194503 C T TMEM37 Silent p.S20S 0.23 TCGA-EE-A29M-06 2 121746042 121746042 C T GLI2 Missense_Mutation p.S851F 0.36 deleterious(0.01) possibly_damaging(0.691) TCGA-EE-A29M-06 2 121748242 121748242 G A GLI2 Missense_Mutation p.M1584I 0.33 tolerated(0.32) benign(0.057) TCGA-EE-A29M-06 2 122038831 122038831 G A TFCP2L1 Missense_Mutation p.P27S 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A29M-06 2 122125381 122125381 G A CLASP1 Silent p.S1223S 0.28 TCGA-EE-A29M-06 2 128066222 128066222 G A MAP3K2 Missense_Mutation p.P525S 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29M-06 2 128918777 128918777 C T UGGT1 Silent p.I920I 0.28 TCGA-EE-A29M-06 2 131520927 131520927 G A AMER3 Missense_Mutation p.D428N 0.31 deleterious(0.03) probably_damaging(0.975) TCGA-EE-A29M-06 2 131704302 131704302 G A ARHGEF4 Intron 0.40 TCGA-EE-A29M-06 2 131829478 131829478 G A FAM168B Missense_Mutation p.P35L 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 2 132021641 132021641 C T POTEE Silent p.L871L 0.25 TCGA-EE-A29M-06 2 133540798 133540798 G A NCKAP5 Missense_Mutation p.P1196S 0.27 tolerated(0.26) benign(0.059) TCGA-EE-A29M-06 2 137814040 137814040 C T THSD7B Missense_Mutation p.R64W 0.29 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29M-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.25 deleterious(0.02) possibly_damaging(0.486) TCGA-EE-A29M-06 2 137928362 137928362 G A THSD7B Missense_Mutation p.G526E 0.20 tolerated(0.27) probably_damaging(0.969) TCGA-EE-A29M-06 2 138400076 138400076 G A THSD7B Missense_Mutation p.R1276Q 0.29 deleterious(0.01) unknown(0) TCGA-EE-A29M-06 2 139326593 139326593 A T SPOPL Silent p.L374L 0.26 TCGA-EE-A29M-06 2 139428988 139428988 C T NXPH2 Missense_Mutation p.R100K 0.30 tolerated(0.56) probably_damaging(0.972) TCGA-EE-A29M-06 2 141110581 141110581 G A LRP1B Missense_Mutation p.S3864L 0.23 possibly_damaging(0.637) TCGA-EE-A29M-06 2 141250219 141250219 C T LRP1B Silent p.R3026R 0.32 TCGA-EE-A29M-06 2 141259393 141259393 G A LRP1B Missense_Mutation p.P2905S 0.11 possibly_damaging(0.876) TCGA-EE-A29M-06 2 141272273 141272273 C T LRP1B Missense_Mutation p.D2740N 0.31 possibly_damaging(0.822) TCGA-EE-A29M-06 2 141294180 141294180 C T LRP1B Missense_Mutation p.D2538N 0.23 possibly_damaging(0.822) TCGA-EE-A29M-06 2 141459349 141459349 C T LRP1B Missense_Mutation p.R2123K 0.27 benign(0.067) TCGA-EE-A29M-06 2 141598492 141598492 G A LRP1B Silent p.V1703V 0.26 TCGA-EE-A29M-06 2 149226818 149226818 C T MBD5 Missense_Mutation p.P436S 0.30 deleterious(0.04) possibly_damaging(0.803) TCGA-EE-A29M-06 2 149270438 149270438 G A MBD5 Splice_Site p.X1472_splice 0.22 TCGA-EE-A29M-06 2 149528627 149528627 G A EPC2 Missense_Mutation p.R464Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 2 152127129 152127129 G A NMI 3'UTR 0.36 TCGA-EE-A29M-06 2 152500622 152500622 G A NEB Missense_Mutation p.R2556C 0.32 probably_damaging(0.998) TCGA-EE-A29M-06 2 152506743 152506743 G A NEB Missense_Mutation p.P2460S 0.31 benign(0.159) TCGA-EE-A29M-06 2 153003815 153003815 G A STAM2 Missense_Mutation p.P103L 0.25 deleterious(0) possibly_damaging(0.895) TCGA-EE-A29M-06 2 154334761 154334761 C T RPRM Missense_Mutation p.G107R 0.28 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-EE-A29M-06 2 158178150 158178150 C T ERMN Missense_Mutation p.R176Q 0.34 tolerated(1) benign(0.009) TCGA-EE-A29M-06 2 158272206 158272206 C T CYTIP Missense_Mutation p.E355K 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29M-06 2 158272595 158272595 C T CYTIP Missense_Mutation p.G225E 0.22 tolerated(0.21) benign(0.079) TCGA-EE-A29M-06 2 158272596 158272596 C T CYTIP Missense_Mutation p.G225R 0.20 deleterious(0.02) possibly_damaging(0.894) TCGA-EE-A29M-06 2 159033041 159033041 C T CCDC148 Missense_Mutation p.E541K 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A29M-06 2 160194147 160194147 C T BAZ2B Missense_Mutation p.R1864Q 0.30 probably_damaging(0.995) TCGA-EE-A29M-06 2 160585558 160585558 C T MARCH7 Missense_Mutation p.P9S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 2 160746742 160746742 C T LY75-CD302 Missense_Mutation p.E262K 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A29M-06 2 160958207 160958207 C T ITGB6 3'UTR 0.33 TCGA-EE-A29M-06 2 162274198 162274198 C T TBR1 Missense_Mutation p.P235L 0.25 deleterious(0) probably_damaging(0.971) TCGA-EE-A29M-06 2 163163287 163163287 T C IFIH1 Missense_Mutation p.E234G 0.22 tolerated(0.28) benign(0.01) TCGA-EE-A29M-06 2 163374317 163374317 C T KCNH7 Missense_Mutation p.R272K 0.19 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A29M-06 2 1648500 1648500 G A PXDN Silent p.I1211I 0.37 TCGA-EE-A29M-06 2 165404237 165404237 G A GRB14 Silent p.I138I 0.25 TCGA-EE-A29M-06 2 165551228 165551228 G A COBLL1 Missense_Mutation p.P930S 0.21 tolerated(0.12) possibly_damaging(0.45) TCGA-EE-A29M-06 2 165796040 165796040 G A SLC38A11 Missense_Mutation p.R97C 0.35 deleterious(0) probably_damaging(0.982) TCGA-EE-A29M-06 2 166210825 166210825 G A SCN2A Missense_Mutation p.D1015N 0.27 tolerated(0.54) benign(0.021) TCGA-EE-A29M-06 2 166533014 166533014 G A CSRNP3 Missense_Mutation p.E201K 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A29M-06 2 166897931 166897931 G A SCN1A Missense_Mutation p.S742F 0.28 deleterious(0.02) possibly_damaging(0.465) TCGA-EE-A29M-06 2 166900267 166900267 G A SCN1A Missense_Mutation p.S652F 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 167055481 167055481 C T SCN9A Missense_Mutation p.D1879N 0.28 deleterious(0.03) benign(0.152) TCGA-EE-A29M-06 2 167085202 167085202 A G SCN9A Missense_Mutation p.V1391A 0.28 deleterious(0) possibly_damaging(0.87) TCGA-EE-A29M-06 2 168099832 168099832 C T XIRP2 Missense_Mutation p.P644S 0.31 probably_damaging(1) TCGA-EE-A29M-06 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.30 possibly_damaging(0.856) TCGA-EE-A29M-06 2 170411657 170411657 C T FASTKD1 Silent p.A397A 0.26 TCGA-EE-A29M-06 2 171056708 171056708 C T MYO3B Missense_Mutation p.P79S 0.23 tolerated(1) benign(0.023) TCGA-EE-A29M-06 2 172016954 172016954 G A TLK1 5'UTR 0.26 TCGA-EE-A29M-06 2 172333454 172333454 C T DCAF17 Silent p.N392N 0.26 TCGA-EE-A29M-06 2 172700923 172700923 G A SLC25A12 Missense_Mutation p.R141W 0.23 deleterious(0) possibly_damaging(0.84) TCGA-EE-A29M-06 2 172700924 172700924 G T SLC25A12 Missense_Mutation p.N140K 0.22 tolerated(0.31) benign(0.003) TCGA-EE-A29M-06 2 175618185 175618185 G A CHRNA1 Intron 0.22 TCGA-EE-A29M-06 2 175742774 175742774 C T CHN1 Missense_Mutation p.D115N 0.27 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 2 17696505 17696505 C T RAD51AP2 Missense_Mutation p.E1060K 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A29M-06 2 17697550 17697550 C T RAD51AP2 Missense_Mutation p.M711I 0.11 tolerated(0.21) benign(0.092) TCGA-EE-A29M-06 2 177054007 177054007 C T HOXD1 Missense_Mutation p.P160S 0.20 tolerated(0.17) benign(0.005) TCGA-EE-A29M-06 2 178879164 178879164 G A PDE11A Silent p.I312I 0.27 TCGA-EE-A29M-06 2 179236866 179236866 A T OSBPL6 Missense_Mutation p.N459I 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 2 179416538 179416538 C T TTN Silent p.K30363K 0.19 TCGA-EE-A29M-06 2 179438573 179438573 C T TTN Missense_Mutation p.D24096N 0.28 TCGA-EE-A29M-06 2 179447831 179447831 T C TTN Missense_Mutation p.D21900G 0.20 TCGA-EE-A29M-06 2 179447838 179447838 T C TTN Missense_Mutation p.K21898E 0.20 TCGA-EE-A29M-06 2 179447840 179447840 C T TTN Nonsense_Mutation p.W21897* 0.18 TCGA-EE-A29M-06 2 179452410 179452410 C T TTN Missense_Mutation p.R21209Q 0.34 TCGA-EE-A29M-06 2 179515540 179515540 G A TTN Missense_Mutation p.P13216L 0.33 TCGA-EE-A29M-06 2 179542471 179542471 C T TTN Missense_Mutation p.E11390K 0.29 TCGA-EE-A29M-06 2 179574561 179574561 G A TTN Silent p.F9495F 0.27 TCGA-EE-A29M-06 2 179590353 179590353 G A TTN Silent p.L6860L 0.24 TCGA-EE-A29M-06 2 179599176 179599176 A C TTN Silent p.S5125S 0.28 TCGA-EE-A29M-06 2 179610723 179610723 G A TTN Intron 0.26 TCGA-EE-A29M-06 2 179611800 179611800 G A TTN Intron 0.27 TCGA-EE-A29M-06 2 179612008 179612008 G A TTN Intron 0.36 TCGA-EE-A29M-06 2 179613768 179613768 C T TTN Intron 0.30 TCGA-EE-A29M-06 2 179613913 179613913 G A TTN Intron 0.28 TCGA-EE-A29M-06 2 179634635 179634635 G A TTN Silent p.I2891I 0.31 TCGA-EE-A29M-06 2 179640452 179640452 C T TTN Missense_Mutation p.E2047K 0.27 TCGA-EE-A29M-06 2 179644017 179644017 C T TTN Missense_Mutation p.R1301K 0.15 TCGA-EE-A29M-06 2 179647089 179647089 C T TTN Missense_Mutation p.G1077E 0.29 TCGA-EE-A29M-06 2 182468673 182468673 G A CERKL Silent p.I124I 0.20 TCGA-EE-A29M-06 2 182765545 182765545 C T SSFA2 Missense_Mutation p.S209F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 2 183051210 183051210 G A PDE1A Missense_Mutation p.S454F 0.12 deleterious(0.02) benign(0.121) TCGA-EE-A29M-06 2 185798390 185798390 G A ZNF804A Missense_Mutation p.D106N 0.25 deleterious(0.03) benign(0.339) TCGA-EE-A29M-06 2 185803862 185803862 G A ZNF804A 3'UTR 0.29 TCGA-EE-A29M-06 2 187693132 187693132 G A ZSWIM2 Missense_Mutation p.P494L 0.22 deleterious(0) probably_damaging(0.911) TCGA-EE-A29M-06 2 188216924 188216924 A G CALCRL Missense_Mutation p.F349L 0.33 deleterious(0.01) possibly_damaging(0.449) TCGA-EE-A29M-06 2 188343432 188343432 C T TFPI Intron 0.25 TCGA-EE-A29M-06 2 189932971 189932971 G A COL5A2 Missense_Mutation p.P428L 0.32 probably_damaging(0.993) TCGA-EE-A29M-06 2 191894583 191894583 G A STAT4 Missense_Mutation p.P744S 0.26 tolerated_low_confidence(0.07) benign(0.015) TCGA-EE-A29M-06 2 196545682 196545682 C T SLC39A10 Nonsense_Mutation p.R306* 0.26 TCGA-EE-A29M-06 2 196661370 196661370 C T DNAH7 Missense_Mutation p.G3482E 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 2 196722214 196722214 G A DNAH7 Silent p.I2767I 0.27 TCGA-EE-A29M-06 2 196749422 196749422 G A DNAH7 Nonsense_Mutation p.R1884* 0.33 TCGA-EE-A29M-06 2 196753020 196753020 C T DNAH7 Missense_Mutation p.V1790I 0.29 tolerated(0.42) benign(0.005) TCGA-EE-A29M-06 2 197005998 197005998 G A STK17B Missense_Mutation p.P211S 0.22 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 2 197171330 197171330 C T HECW2 Missense_Mutation p.R899Q 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29M-06 2 200137014 200137014 C T SATB2 Missense_Mutation p.E708K 0.23 tolerated(0.11) benign(0.04) TCGA-EE-A29M-06 2 20169255 20169255 G A WDR35 Nonsense_Mutation p.R332* 0.35 TCGA-EE-A29M-06 2 20178522 20178523 AC T WDR35 Frame_Shift_Del p.G142Dfs*13 0.14 TCGA-EE-A29M-06 2 201846418 201846418 C T FAM126B Missense_Mutation p.A390T 0.25 tolerated(0.29) benign(0) TCGA-EE-A29M-06 2 202093788 202093788 G A CASP10 Silent p.R516R 0.25 TCGA-EE-A29M-06 2 202149718 202149718 G A CASP8 Missense_Mutation p.G387R 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29M-06 2 202264134 202264134 G A TRAK2 Missense_Mutation p.S149F 0.25 tolerated(0.35) benign(0.427) TCGA-EE-A29M-06 2 202492842 202492842 G A TMEM237 Silent p.I300I 0.28 TCGA-EE-A29M-06 2 202900792 202900792 C T FZD7 Silent p.F474F 0.29 TCGA-EE-A29M-06 2 207169640 207169640 G A ZDBF2 Missense_Mutation p.E130K 0.20 tolerated(0.27) benign(0.292) TCGA-EE-A29M-06 2 21229889 21229889 G A APOB Missense_Mutation p.S3284F 0.43 benign(0.206) TCGA-EE-A29M-06 2 212488680 212488680 G A ERBB4 Silent p.V723V 0.27 TCGA-EE-A29M-06 2 212587181 212587181 G A ERBB4 Nonsense_Mutation p.Q274* 0.32 TCGA-EE-A29M-06 2 215440493 215440493 G A VWC2L Nonsense_Mutation p.W206* 0.28 TCGA-EE-A29M-06 2 215875108 215875108 C T ABCA12 Missense_Mutation p.G807R 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 217724400 217724400 G A TNP1 Missense_Mutation p.S53F 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29M-06 2 219029047 219029047 G A CXCR1 Silent p.L296L 0.32 TCGA-EE-A29M-06 2 219204529 219204529 G A PNKD Nonsense_Mutation p.W87* 0.28 TCGA-EE-A29M-06 2 219513622 219513622 G A ZNF142 Missense_Mutation p.H337Y 0.23 tolerated(0.29) benign(0.004) TCGA-EE-A29M-06 2 219619219 219619219 C T TTLL4 3'UTR 0.36 TCGA-EE-A29M-06 2 220081123 220081123 G A ABCB6 Silent p.F311F 0.24 TCGA-EE-A29M-06 2 220312828 220312828 C T SPEG Silent p.V316V 0.35 TCGA-EE-A29M-06 2 220342693 220342693 C T SPEG Silent p.F1631F 0.32 TCGA-EE-A29M-06 2 220370372 220370372 C T GMPPA Intron 0.17 TCGA-EE-A29M-06 2 220370719 220370719 C T GMPPA Silent p.S306S 0.29 TCGA-EE-A29M-06 2 220473424 220473424 C T STK11IP Missense_Mutation p.R586C 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 2 222428866 222428866 G A EPHA4 Silent p.F136F 0.29 TCGA-EE-A29M-06 2 223066035 223066035 G A PAX3 Intron 0.26 TCGA-EE-A29M-06 2 224463214 224463214 C T SCG2 Missense_Mutation p.E263K 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 226447029 226447029 C T NYAP2 Missense_Mutation p.P299L 0.30 deleterious(0.01) possibly_damaging(0.64) TCGA-EE-A29M-06 2 227875143 227875143 G A COL4A4 Missense_Mutation p.L1470F 0.36 unknown(0) TCGA-EE-A29M-06 2 227892716 227892716 C T COL4A4 Missense_Mutation p.G1328E 0.27 unknown(0) TCGA-EE-A29M-06 2 227946830 227946830 C T COL4A4 Splice_Site p.X566_splice 0.25 TCGA-EE-A29M-06 2 227967554 227967554 C T COL4A4 Missense_Mutation p.G294D 0.23 probably_damaging(1) TCGA-EE-A29M-06 2 228148999 228148999 G A COL4A3 Missense_Mutation p.G940E 0.29 unknown(0) TCGA-EE-A29M-06 2 228860280 228860280 C T SPHKAP Missense_Mutation p.E1527K 0.26 deleterious(0) probably_damaging(0.927) TCGA-EE-A29M-06 2 228883843 228883843 C T SPHKAP Missense_Mutation p.R576K 0.27 tolerated(1) benign(0.001) TCGA-EE-A29M-06 2 228883992 228883992 C T SPHKAP Silent p.S526S 0.27 TCGA-EE-A29M-06 2 230660029 230660029 G A TRIP12 Silent p.P1203P 0.30 TCGA-EE-A29M-06 2 231112769 231112769 G A SP140 Missense_Mutation p.G294E 0.24 tolerated(0.13) benign(0.012) TCGA-EE-A29M-06 2 231254654 231254654 G A SP140L Missense_Mutation p.E294K 0.27 tolerated(0.73) benign(0.012) TCGA-EE-A29M-06 2 231256845 231256845 C T SP140L Silent p.F336F 0.29 TCGA-EE-A29M-06 2 233322372 233322372 G A ALPI Missense_Mutation p.G249E 0.32 deleterious(0.05) benign(0.258) TCGA-EE-A29M-06 2 233323104 233323104 G A ALPI Missense_Mutation p.G390E 0.27 deleterious(0) possibly_damaging(0.512) TCGA-EE-A29M-06 2 233431625 233431625 C T EIF4E2 Silent p.A154A 0.23 TCGA-EE-A29M-06 2 234112876 234112876 C T INPP5D Missense_Mutation p.S1015F 0.26 deleterious(0) possibly_damaging(0.622) TCGA-EE-A29M-06 2 234217864 234217864 C T SAG Missense_Mutation p.S10F 0.32 deleterious(0.01) benign(0.418) TCGA-EE-A29M-06 2 234360641 234360641 C T DGKD Silent p.P733P 0.27 TCGA-EE-A29M-06 2 234468559 234468559 G A USP40 Silent p.I105I 0.32 TCGA-EE-A29M-06 2 234669609 234669609 G A UGT1A8 Intron 0.34 TCGA-EE-A29M-06 2 234869601 234869601 C T TRPM8 Missense_Mutation p.S515F 0.33 deleterious(0.04) probably_damaging(0.972) TCGA-EE-A29M-06 2 234959619 234959619 C T SPP2 Silent p.F30F 0.23 TCGA-EE-A29M-06 2 237300635 237300635 C T IQCA1 Missense_Mutation p.G466E 0.24 tolerated(0.52) benign(0.012) TCGA-EE-A29M-06 2 238266502 238266502 C T COL6A3 Silent p.Q2165Q 0.27 TCGA-EE-A29M-06 2 238280629 238280629 G A COL6A3 Missense_Mutation p.S1344L 0.41 benign(0.167) TCGA-EE-A29M-06 2 238280757 238280757 C T COL6A3 Silent p.R1301R 0.30 TCGA-EE-A29M-06 2 239162251 239162251 G A PER2 Nonsense_Mutation p.R805* 0.15 TCGA-EE-A29M-06 2 242035496 242035496 C T MTERFD2 Missense_Mutation p.D355N 0.33 tolerated(0.54) unknown(0) TCGA-EE-A29M-06 2 242174968 242174968 G A HDLBP Silent p.D982D 0.28 TCGA-EE-A29M-06 2 242265433 242265433 C T SEPT2 Missense_Mutation p.P12L 0.33 tolerated(0.1) benign(0.005) TCGA-EE-A29M-06 2 242542425 242542425 G A THAP4 Silent p.P490P 0.24 TCGA-EE-A29M-06 2 242542426 242542426 G A THAP4 Missense_Mutation p.P490L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 2 24406459 24406459 C T FAM228A Missense_Mutation p.P116S 0.52 deleterious(0.05) possibly_damaging(0.814) TCGA-EE-A29M-06 2 26533851 26533851 C T GPR113 Silent p.G915G 0.37 TCGA-EE-A29M-06 2 26537355 26537355 G A GPR113 Silent p.F353F 0.39 TCGA-EE-A29M-06 2 26703149 26703149 G A OTOF Missense_Mutation p.L612F 0.45 deleterious(0) probably_damaging(0.938) TCGA-EE-A29M-06 2 27802154 27802154 G A C2orf16 Silent p.R905R 0.40 TCGA-EE-A29M-06 2 29295898 29295898 C T C2orf71 Silent p.Q410Q 0.28 TCGA-EE-A29M-06 2 29543705 29543705 G A ALK Silent p.F486F 0.26 TCGA-EE-A29M-06 2 30863146 30863146 C T LCLAT1 Silent p.L302L 0.35 TCGA-EE-A29M-06 2 30961278 30961278 C T CAPN13 Missense_Mutation p.E528K 0.22 tolerated(0.07) possibly_damaging(0.908) TCGA-EE-A29M-06 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.31 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A29M-06 2 31165110 31165110 C T GALNT14 Silent p.G301G 0.26 TCGA-EE-A29M-06 2 31178546 31178546 G A GALNT14 Missense_Mutation p.L203F 0.27 deleterious(0) probably_damaging(0.989) TCGA-EE-A29M-06 2 31562522 31562522 C T XDH Missense_Mutation p.G1203S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 33246227 33246227 C T LTBP1 Missense_Mutation p.L273F 0.29 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A29M-06 2 33335750 33335750 G A LTBP1 Missense_Mutation p.G322E 0.30 deleterious(0.01) possibly_damaging(0.616) TCGA-EE-A29M-06 2 33622247 33622247 C T LTBP1 Missense_Mutation p.L1628F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 2 37235932 37235932 A - HEATR5B Frame_Shift_Del p.N1450Ifs*20 0.24 TCGA-EE-A29M-06 2 37406707 37406707 G A SULT6B1 Silent p.N103N 0.26 TCGA-EE-A29M-06 2 37443540 37443540 C T CEBPZ Missense_Mutation p.G744R 0.28 deleterious(0) possibly_damaging(0.634) TCGA-EE-A29M-06 2 38536592 38536592 G A ATL2 Missense_Mutation p.P334S 0.33 tolerated(0.09) possibly_damaging(0.715) TCGA-EE-A29M-06 2 39249723 39249723 G A SOS1 Missense_Mutation p.H616Y 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 40366725 40366725 G A SLC8A1 Silent p.V787V 0.31 TCGA-EE-A29M-06 2 44457983 44457983 C T PPM1B 3'UTR 0.44 TCGA-EE-A29M-06 2 45829063 45829063 G A SRBD1 Silent p.V80V 0.21 TCGA-EE-A29M-06 2 45829070 45829070 G A SRBD1 Missense_Mutation p.S78L 0.22 tolerated_low_confidence(0.3) benign(0.002) TCGA-EE-A29M-06 2 46987134 46987134 C T SOCS5 Missense_Mutation p.R489C 0.26 deleterious(0.03) benign(0.284) TCGA-EE-A29M-06 2 47703666 47703666 C T MSH2 Silent p.V722V 0.23 TCGA-EE-A29M-06 2 48818851 48818851 C T STON1-GTF2A1L Missense_Mutation p.P664S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 48898789 48898789 G A STON1-GTF2A1L Silent p.T1137T 0.19 TCGA-EE-A29M-06 2 48898790 48898790 G A STON1-GTF2A1L Missense_Mutation p.D1138N 0.19 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A29M-06 2 48936102 48936102 G A LHCGR Missense_Mutation p.T222I 0.24 tolerated(0.17) benign(0.071) TCGA-EE-A29M-06 2 48936103 48936103 T G LHCGR Missense_Mutation p.T222P 0.24 deleterious(0.02) benign(0.129) TCGA-EE-A29M-06 2 58350302 58350302 G A VRK2 Missense_Mutation p.E204K 0.32 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 2 66667712 66667712 C T MEIS1 Silent p.L134L 0.23 TCGA-EE-A29M-06 2 67631707 67631707 G A ETAA1 Silent p.K631K 0.24 TCGA-EE-A29M-06 2 68607869 68607869 C T PLEK Silent p.I71I 0.28 TCGA-EE-A29M-06 2 69098400 69098400 G A BMP10 Missense_Mutation p.P31S 0.23 tolerated(0.71) benign(0.004) TCGA-EE-A29M-06 2 71360430 71360430 C T MPHOSPH10 Silent p.P164P 0.26 TCGA-EE-A29M-06 2 71778790 71778790 G A DYSF Silent p.L582L 0.22 TCGA-EE-A29M-06 2 74753794 74753794 G A AUP1 3'UTR 0.26 TCGA-EE-A29M-06 2 74808912 74808912 C T M1AP Missense_Mutation p.E220K 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 2 74906751 74906751 C T SEMA4F Silent p.P576P 0.29 TCGA-EE-A29M-06 2 75425980 75425980 T C TACR1 Silent p.Q27Q 0.37 TCGA-EE-A29M-06 2 79384253 79384253 G A REG3A 3'UTR 0.26 TCGA-EE-A29M-06 2 85571139 85571139 G A RETSAT Missense_Mutation p.P506S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 2 85894911 85894911 G A SFTPB Missense_Mutation p.S41F 0.22 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A29M-06 2 87214124 87214124 G A RGPD1 Missense_Mutation p.E1360K 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 2 88410017 88410017 C T SMYD1 Missense_Mutation p.H487Y 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.501) TCGA-EE-A29M-06 2 89197276 89197276 C T IGKV5-2 Silent p.F107F 0.32 TCGA-EE-A29M-06 2 89247319 89247319 C T IGKV1-5 5'UTR 0.29 TCGA-EE-A29M-06 2 90078102 90078102 C T IGKV3D-20 Nonsense_Mutation p.Q47* 0.52 TCGA-EE-A29M-06 2 90078157 90078157 C T IGKV3D-20 Missense_Mutation p.P65L 0.54 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 2 9463340 9463340 G T ASAP2 Missense_Mutation p.M187I 0.29 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A29M-06 2 95481214 95481214 G A ANKRD20A8P RNA 0.24 TCGA-EE-A29M-06 2 95481532 95481532 G A ANKRD20A8P RNA 0.24 TCGA-EE-A29M-06 2 95540640 95540640 C T TEKT4 Missense_Mutation p.S278F 0.41 deleterious(0) probably_damaging(0.972) TCGA-EE-A29M-06 2 95540641 95540641 C T TEKT4 Silent p.S278S 0.39 TCGA-EE-A29M-06 2 95954277 95954277 C T PROM2 Missense_Mutation p.P794L 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29M-06 2 96781134 96781134 G A ADRA2B Missense_Mutation p.S252F 0.28 deleterious(0.04) benign(0.121) TCGA-EE-A29M-06 2 96781270 96781270 G A ADRA2B Missense_Mutation p.P207S 0.36 tolerated(0.21) benign(0.013) TCGA-EE-A29M-06 2 96803358 96803358 C T ASTL Missense_Mutation p.G46E 0.30 tolerated(1) benign(0.009) TCGA-EE-A29M-06 2 96920668 96920668 G A TMEM127 Silent p.I104I 0.27 TCGA-EE-A29M-06 2 96993861 96993861 A G ITPRIPL1 Missense_Mutation p.N506D 0.40 tolerated(0.64) benign(0.022) TCGA-EE-A29M-06 2 97217345 97217345 G A ARID5A Silent p.R360R 0.31 TCGA-EE-A29M-06 2 97217346 97217346 G A ARID5A Missense_Mutation p.D361N 0.30 tolerated(0.09) possibly_damaging(0.793) TCGA-EE-A29M-06 2 97427280 97427280 C T CNNM4 Missense_Mutation p.L182F 0.30 tolerated(0.33) benign(0.033) TCGA-EE-A29M-06 3 100174827 100174827 C T LNP1 3'UTR 0.24 TCGA-EE-A29M-06 3 100174829 100174829 C T LNP1 3'UTR 0.24 TCGA-EE-A29M-06 3 100949962 100949962 G A IMPG2 Silent p.Y1087Y 0.43 TCGA-EE-A29M-06 3 100963295 100963295 G A IMPG2 Missense_Mutation p.P627L 0.49 deleterious(0) benign(0.221) TCGA-EE-A29M-06 3 100986371 100986371 G A IMPG2 Missense_Mutation p.P298S 0.19 tolerated(0.07) possibly_damaging(0.851) TCGA-EE-A29M-06 3 10146326 10146326 C T FANCD2OS Missense_Mutation p.D45N 0.43 deleterious(0.01) benign(0.005) TCGA-EE-A29M-06 3 10491134 10491134 G A ATP2B2 Missense_Mutation p.R32C 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29M-06 3 107766113 107766113 G A CD47 3'UTR 0.15 TCGA-EE-A29M-06 3 107766114 107766114 G A CD47 3'UTR 0.14 TCGA-EE-A29M-06 3 108572476 108572476 G A TRAT1 Missense_Mutation p.E105K 0.39 deleterious(0.01) benign(0.117) TCGA-EE-A29M-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.15 deleterious(0) possibly_damaging(0.906) TCGA-EE-A29M-06 3 108751586 108751586 G A MORC1 Missense_Mutation p.P516S 0.40 deleterious(0.01) possibly_damaging(0.589) TCGA-EE-A29M-06 3 108782032 108782032 C T MORC1 Missense_Mutation p.E288K 0.36 deleterious(0) probably_damaging(0.992) TCGA-EE-A29M-06 3 109031453 109031453 C T DPPA2 Missense_Mutation p.M40I 0.43 tolerated(0.57) benign(0.002) TCGA-EE-A29M-06 3 11058801 11058801 C T SLC6A1 5'UTR 0.39 TCGA-EE-A29M-06 3 111263947 111263947 C T CD96 Missense_Mutation p.S39F 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 3 111298075 111298075 G A CD96 Missense_Mutation p.V265I 0.30 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A29M-06 3 111313081 111313081 C T ZBED2 5'UTR 0.21 TCGA-EE-A29M-06 3 111319755 111319755 C T CD96 Missense_Mutation p.L377F 0.23 tolerated(0.17) benign(0.002) TCGA-EE-A29M-06 3 111564709 111564709 G A PLCXD2 3'UTR 0.20 TCGA-EE-A29M-06 3 112648058 112648058 C T CD200R1 Missense_Mutation p.G167R 0.20 tolerated(0.17) probably_damaging(0.962) TCGA-EE-A29M-06 3 11301955 11301955 G A HRH1 Missense_Mutation p.R411K 0.43 tolerated(0.13) benign(0.19) TCGA-EE-A29M-06 3 11301956 11301956 G A HRH1 Silent p.R411R 0.44 TCGA-EE-A29M-06 3 113115566 113115566 G A WDR52 Silent p.F526F 0.54 TCGA-EE-A29M-06 3 113135415 113135415 G A WDR52 Silent p.I210I 0.15 TCGA-EE-A29M-06 3 113672624 113672624 C T ZDHHC23 Missense_Mutation p.P80L 0.44 deleterious(0) possibly_damaging(0.755) TCGA-EE-A29M-06 3 113729778 113729778 C T KIAA1407 Silent p.L418L 0.42 TCGA-EE-A29M-06 3 113775442 113775442 A G KIAA1407 5'UTR 0.28 TCGA-EE-A29M-06 3 118935164 118935164 G A B4GALT4 Silent p.S275S 0.15 TCGA-EE-A29M-06 3 118935165 118935165 G A B4GALT4 Missense_Mutation p.S275F 0.14 tolerated(0.59) benign(0.015) TCGA-EE-A29M-06 3 119120848 119120848 C T ARHGAP31 Missense_Mutation p.R417C 0.18 deleterious(0) possibly_damaging(0.796) TCGA-EE-A29M-06 3 119256207 119256207 C T CD80 Silent p.R159R 0.44 TCGA-EE-A29M-06 3 120973834 120973834 G A STXBP5L Missense_Mutation p.E512K 0.22 deleterious(0) possibly_damaging(0.529) TCGA-EE-A29M-06 3 121001168 121001168 C T STXBP5L Silent p.I722I 0.21 TCGA-EE-A29M-06 3 121260236 121260236 G A POLQ Missense_Mutation p.P145L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 121659684 121659684 G A SLC15A2 Missense_Mutation p.E674K 0.32 deleterious(0) possibly_damaging(0.879) TCGA-EE-A29M-06 3 12182185 12182185 G A SYN2 RNA 0.21 TCGA-EE-A29M-06 3 122001074 122001074 G A CASR Missense_Mutation p.D585N 0.38 tolerated(1) benign(0.002) TCGA-EE-A29M-06 3 122003412 122003412 G A CASR Missense_Mutation p.E881K 0.51 tolerated(0.21) probably_damaging(0.958) TCGA-EE-A29M-06 3 122404132 122404132 C T PARP14 Silent p.I96I 0.22 TCGA-EE-A29M-06 3 122645393 122645393 C A SEMA5B Missense_Mutation p.G382C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 122645394 122645394 C T SEMA5B Silent p.G381G 0.19 TCGA-EE-A29M-06 3 123023025 123023025 G A ADCY5 Silent p.F816F 0.18 TCGA-EE-A29M-06 3 123451911 123451911 C T MYLK Missense_Mutation p.E450K 0.38 deleterious(0.01) benign(0.156) TCGA-EE-A29M-06 3 124153367 124153367 G A KALRN Missense_Mutation p.E1013K 0.19 deleterious(0) probably_damaging(0.986) TCGA-EE-A29M-06 3 124181391 124181391 C T KALRN Silent p.T1312T 0.39 TCGA-EE-A29M-06 3 124376396 124376396 G T KALRN Missense_Mutation p.K79N 0.37 tolerated(0.06) benign(0.428) TCGA-EE-A29M-06 3 124515329 124515329 G A ITGB5 Silent p.C533C 0.46 TCGA-EE-A29M-06 3 124732623 124732623 G A HEG1 Silent p.S600S 0.28 TCGA-EE-A29M-06 3 124748248 124748248 G A HEG1 Missense_Mutation p.S134L 0.35 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-EE-A29M-06 3 125298879 125298879 A G OSBPL11 Missense_Mutation p.F80S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 125828946 125828946 C T ALDH1L1 Missense_Mutation p.E740K 0.44 tolerated(0.09) benign(0.323) TCGA-EE-A29M-06 3 126071118 126071118 G A KLF15 Silent p.P216P 0.34 TCGA-EE-A29M-06 3 126142196 126142196 G A CCDC37 Missense_Mutation p.E371K 0.40 tolerated(0.06) benign(0.017) TCGA-EE-A29M-06 3 126748745 126748745 C T PLXNA1 Silent p.P1633P 0.22 TCGA-EE-A29M-06 3 126915578 126915578 C T C3orf56 Missense_Mutation p.A17V 0.23 tolerated_low_confidence(0.12) possibly_damaging(0.682) TCGA-EE-A29M-06 3 126915579 126915579 C T C3orf56 Silent p.A17A 0.23 TCGA-EE-A29M-06 3 126915582 126915582 C T C3orf56 Silent p.F18F 0.32 TCGA-EE-A29M-06 3 127336840 127336840 C T MCM2 Silent p.F643F 0.39 TCGA-EE-A29M-06 3 128292266 128292266 G A C3orf27 Silent p.L103L 0.41 TCGA-EE-A29M-06 3 128628800 128628800 G A RP11-723O4.6 3'UTR 0.46 TCGA-EE-A29M-06 3 130159348 130159348 G A COL6A5 Missense_Mutation p.A2056T 0.45 tolerated(0.14) benign(0.056) TCGA-EE-A29M-06 3 130283890 130283890 C T COL6A6 Silent p.I238I 0.44 TCGA-EE-A29M-06 3 130293024 130293024 G A COL6A6 Missense_Mutation p.E1068K 0.51 tolerated(0.14) benign(0.287) TCGA-EE-A29M-06 3 132203454 132203454 C T DNAJC13 Missense_Mutation p.R1069W 0.46 deleterious(0.03) possibly_damaging(0.603) TCGA-EE-A29M-06 3 133467361 133467361 C T TF Missense_Mutation p.P50L 0.21 deleterious(0.03) benign(0.145) TCGA-EE-A29M-06 3 133497610 133497610 A G TF 3'UTR 0.38 TCGA-EE-A29M-06 3 133661578 133661578 G A SLCO2A1 Missense_Mutation p.S499F 0.22 deleterious(0.05) benign(0.033) TCGA-EE-A29M-06 3 134920399 134920399 G A EPHB1 Missense_Mutation p.M738I 0.38 deleterious(0.02) possibly_damaging(0.896) TCGA-EE-A29M-06 3 136714374 136714374 C T IL20RB Silent p.P267P 0.42 TCGA-EE-A29M-06 3 138248045 138248045 T A CEP70 Missense_Mutation p.T289S 0.22 tolerated(1) benign(0.004) TCGA-EE-A29M-06 3 138251366 138251366 G A CEP70 Missense_Mutation p.H228Y 0.35 tolerated(0.5) benign(0.002) TCGA-EE-A29M-06 3 138453617 138453617 G A PIK3CB Silent p.A277A 0.18 TCGA-EE-A29M-06 3 138453618 138453618 G A PIK3CB Missense_Mutation p.A277V 0.19 tolerated(0.29) benign(0.039) TCGA-EE-A29M-06 3 138724853 138724853 C T PRR23A Silent p.S86S 0.17 TCGA-EE-A29M-06 3 138739004 138739004 C A PRR23B Missense_Mutation p.R167L 0.27 tolerated(0.4) benign(0.226) TCGA-EE-A29M-06 3 139297777 139297777 C T NMNAT3 Nonsense_Mutation p.W40* 0.17 TCGA-EE-A29M-06 3 140277513 140277513 C T CLSTN2 Missense_Mutation p.P619S 0.26 deleterious(0) possibly_damaging(0.624) TCGA-EE-A29M-06 3 140407357 140407357 G A TRIM42 Silent p.Q611Q 0.18 TCGA-EE-A29M-06 3 142567290 142567290 G A PCOLCE2 Missense_Mutation p.L73F 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 3 142840669 142840669 G T CHST2 Silent p.V337V 0.21 TCGA-EE-A29M-06 3 148583291 148583291 G A CPA3 Missense_Mutation p.E34K 0.38 deleterious(0.03) possibly_damaging(0.708) TCGA-EE-A29M-06 3 14952406 14952406 G A FGD5 Silent p.G1125G 0.40 TCGA-EE-A29M-06 3 150881731 150881731 G A MED12L Missense_Mutation p.E387K 0.22 tolerated(0.16) benign(0.119) TCGA-EE-A29M-06 3 150916315 150916315 G T GPR171 Missense_Mutation p.H287N 0.21 tolerated(0.21) benign(0.002) TCGA-EE-A29M-06 3 151085540 151085540 C T MED12L Missense_Mutation p.S1110F 0.39 deleterious(0) probably_damaging(0.975) TCGA-EE-A29M-06 3 151163411 151163411 C T IGSF10 Missense_Mutation p.R1453K 0.36 tolerated(0.25) benign(0.006) TCGA-EE-A29M-06 3 151531958 151531958 G A AADAC Missense_Mutation p.R3K 0.16 tolerated(0.3) benign(0.002) TCGA-EE-A29M-06 3 151599328 151599328 G A SUCNR1 Missense_Mutation p.E333K 0.38 tolerated_low_confidence(0.36) benign(0) TCGA-EE-A29M-06 3 154857980 154857980 G A MME Missense_Mutation p.A286T 0.38 deleterious(0.03) possibly_damaging(0.495) TCGA-EE-A29M-06 3 15493026 15493026 G A COLQ 3'UTR 0.43 TCGA-EE-A29M-06 3 15499767 15499767 C T COLQ Missense_Mutation p.G294R 0.38 tolerated(0.44) unknown(0) TCGA-EE-A29M-06 3 158428691 158428691 C T RARRES1 Missense_Mutation p.G124E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 3 161146971 161146971 G A RP11-3P17.5 RNA 0.20 TCGA-EE-A29M-06 3 164716441 164716441 C T SI Missense_Mutation p.G1476E 0.50 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 3 164735827 164735827 G A SI Missense_Mutation p.P1151S 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A29M-06 3 164777010 164777010 G A SI Silent p.L408L 0.47 TCGA-EE-A29M-06 3 164905627 164905627 C T SLITRK3 3'UTR 0.16 TCGA-EE-A29M-06 3 164905801 164905801 C T SLITRK3 Missense_Mutation p.G940R 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-EE-A29M-06 3 164907726 164907726 G A SLITRK3 Missense_Mutation p.S298L 0.43 tolerated(0.34) benign(0) TCGA-EE-A29M-06 3 164908087 164908087 G A SLITRK3 Silent p.L178L 0.43 TCGA-EE-A29M-06 3 168833467 168833467 C T MECOM Silent p.K608K 0.42 TCGA-EE-A29M-06 3 169504516 169504516 C T MYNN 3'UTR 0.45 TCGA-EE-A29M-06 3 169574611 169574611 C A LRRC31 Missense_Mutation p.W179C 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 169999701 169999701 G A PRKCI Missense_Mutation p.G338R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 170219102 170219102 G A SLC7A14 Missense_Mutation p.P113S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 170846571 170846571 C T TNIK Missense_Mutation p.E569K 0.20 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-EE-A29M-06 3 170912325 170912325 C T TNIK Missense_Mutation p.E136K 0.19 deleterious(0) unknown(0) TCGA-EE-A29M-06 3 171320910 171320910 A G PLD1 Silent p.V1061V 0.16 TCGA-EE-A29M-06 3 172163036 172163036 C T GHSR Missense_Mutation p.G339E 0.23 tolerated(0.31) possibly_damaging(0.477) TCGA-EE-A29M-06 3 172165763 172165763 G T GHSR Missense_Mutation p.F147L 0.26 deleterious(0.05) probably_damaging(0.932) TCGA-EE-A29M-06 3 173999060 173999060 C T NLGN1 Silent p.P813P 0.36 TCGA-EE-A29M-06 3 180359974 180359974 C T CCDC39 Missense_Mutation p.D561N 0.21 tolerated(0.21) benign(0.061) TCGA-EE-A29M-06 3 183390263 183390263 C T KLHL24 Silent p.F531F 0.48 TCGA-EE-A29M-06 3 183755932 183755932 C T HTR3D Missense_Mutation p.P262S 0.35 tolerated(0.27) benign(0.401) TCGA-EE-A29M-06 3 183755963 183755963 G A HTR3D Missense_Mutation p.S272N 0.40 tolerated(1) benign(0.017) TCGA-EE-A29M-06 3 184090594 184090594 T C THPO Missense_Mutation p.T257A 0.42 deleterious_low_confidence(0.01) benign(0.437) TCGA-EE-A29M-06 3 184094044 184094044 C T THPO Missense_Mutation p.E2K 0.19 deleterious(0.01) unknown(0) TCGA-EE-A29M-06 3 185155255 185155255 G A MAP3K13 Missense_Mutation p.E166K 0.40 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A29M-06 3 185975698 185975698 G A DGKG Silent p.F485F 0.39 TCGA-EE-A29M-06 3 186449367 186449367 G A KNG1 Missense_Mutation p.D236N 0.47 tolerated(0.36) benign(0.183) TCGA-EE-A29M-06 3 189455563 189455563 G A TP63 Missense_Mutation p.E33K 0.45 deleterious_low_confidence(0.04) benign(0.074) TCGA-EE-A29M-06 3 189582089 189582089 G A TP63 Missense_Mutation p.M216I 0.18 tolerated(0.29) benign(0.024) TCGA-EE-A29M-06 3 189608668 189608668 G A TP63 Missense_Mutation p.M581I 0.23 tolerated(1) benign(0.007) TCGA-EE-A29M-06 3 189612176 189612176 G A TP63 Missense_Mutation p.R643Q 0.33 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A29M-06 3 190106125 190106125 G A CLDN16 Missense_Mutation p.D73N 0.40 tolerated(0.2) benign(0.011) TCGA-EE-A29M-06 3 191861709 191861709 C T FGF12 3'UTR 0.43 TCGA-EE-A29M-06 3 193032886 193032886 C T ATP13A5 Splice_Site p.X678_splice 0.40 TCGA-EE-A29M-06 3 193040314 193040314 G A ATP13A5 Missense_Mutation p.S575L 0.44 tolerated(0.25) possibly_damaging(0.752) TCGA-EE-A29M-06 3 194337856 194337856 G A TMEM44 Missense_Mutation p.S299F 0.42 deleterious(0) probably_damaging(0.917) TCGA-EE-A29M-06 3 194392959 194392959 C T LSG1 5'UTR 0.43 TCGA-EE-A29M-06 3 195452076 195452076 G A MUC20 Missense_Mutation p.G201D 0.12 tolerated_low_confidence(0.08) benign(0.2) TCGA-EE-A29M-06 3 195517402 195517402 G A MUC4 Missense_Mutation p.S350L 0.20 unknown(0) TCGA-EE-A29M-06 3 196555209 196555209 C T PAK2 Missense_Mutation p.A503V 0.15 deleterious(0) probably_damaging(0.948) TCGA-EE-A29M-06 3 197401516 197401516 G A KIAA0226 3'Flank 0.13 TCGA-EE-A29M-06 3 20017216 20017216 C T RAB5A Missense_Mutation p.A96V 0.19 deleterious(0.04) possibly_damaging(0.566) TCGA-EE-A29M-06 3 20017217 20017217 C T RAB5A Silent p.A96A 0.20 TCGA-EE-A29M-06 3 26751307 26751307 C T LRRC3B Silent p.V48V 0.47 TCGA-EE-A29M-06 3 26751923 26751923 G A LRRC3B Missense_Mutation p.D254N 0.34 deleterious(0.02) benign(0.366) TCGA-EE-A29M-06 3 2928840 2928840 G A CNTN4 Missense_Mutation p.G291D 0.23 deleterious(0) probably_damaging(0.978) TCGA-EE-A29M-06 3 3076318 3076318 C T CNTN4 Missense_Mutation p.P596S 0.14 tolerated(0.18) possibly_damaging(0.893) TCGA-EE-A29M-06 3 30885920 30885920 C T GADL1 Silent p.G230G 0.42 TCGA-EE-A29M-06 3 33877671 33877671 C T PDCD6IP Missense_Mutation p.P329S 0.15 deleterious(0) probably_damaging(0.988) TCGA-EE-A29M-06 3 35729253 35729253 C T ARPP21 Missense_Mutation p.S95F 0.42 deleterious(0.04) probably_damaging(0.964) TCGA-EE-A29M-06 3 36547319 36547319 G A STAC Missense_Mutation p.E305K 0.51 deleterious(0.04) possibly_damaging(0.745) TCGA-EE-A29M-06 3 36779265 36779265 C T DCLK3 Missense_Mutation p.E296K 0.42 deleterious(0.02) benign(0.219) TCGA-EE-A29M-06 3 36779826 36779826 G A DCLK3 Missense_Mutation p.P109S 0.46 tolerated(0.64) benign(0.005) TCGA-EE-A29M-06 3 36893308 36893308 G A TRANK1 Missense_Mutation p.P1553S 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A29M-06 3 38317122 38317122 C T SLC22A13 Silent p.H327H 0.32 TCGA-EE-A29M-06 3 38357869 38357869 C T SLC22A14 Silent p.S529S 0.20 TCGA-EE-A29M-06 3 38639247 38639247 G A SCN5A Silent p.F745F 0.46 TCGA-EE-A29M-06 3 38639421 38639421 C T SCN5A Nonsense_Mutation p.W687* 0.48 TCGA-EE-A29M-06 3 38663892 38663892 C T SCN5A Missense_Mutation p.E161K 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29M-06 3 38753898 38753898 G A SCN10A Silent p.I1281I 0.24 TCGA-EE-A29M-06 3 3888048 3888048 C T LRRN1 Missense_Mutation p.P575S 0.21 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A29M-06 3 38912235 38912235 C T SCN11A Missense_Mutation p.A1254T 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 3 38991931 38991931 G A SCN11A 5'UTR 0.44 TCGA-EE-A29M-06 3 39226003 39226003 C T XIRP1 Missense_Mutation p.R1645K 0.22 tolerated(0.25) benign(0.005) TCGA-EE-A29M-06 3 39307647 39307647 G A CX3CR1 Silent p.F150F 0.41 TCGA-EE-A29M-06 3 44776077 44776077 G T ZNF501 Missense_Mutation p.C55F 0.23 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-EE-A29M-06 3 44881943 44881943 C T KIF15 Missense_Mutation p.P1139S 0.44 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A29M-06 3 45030653 45030653 C T EXOSC7 Missense_Mutation p.R27C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 3 45132817 45132817 C A CDCP1 Missense_Mutation p.R614L 0.45 tolerated(0.12) benign(0.273) TCGA-EE-A29M-06 3 45152248 45152248 A C CDCP1 Missense_Mutation p.D247E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 3 45943267 45943267 G A CCR9 Silent p.V329V 0.27 TCGA-EE-A29M-06 3 46963466 46963466 G A CCDC12 3'UTR 0.47 TCGA-EE-A29M-06 3 47037254 47037254 G A NBEAL2 Missense_Mutation p.G650E 0.43 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 3 4725190 4725190 C T ITPR1 Silent p.F1079F 0.45 TCGA-EE-A29M-06 3 4732914 4732914 C T ITPR1 Silent p.F1290F 0.14 TCGA-EE-A29M-06 3 47361193 47361193 C T KLHL18 Silent p.I60I 0.22 TCGA-EE-A29M-06 3 47539878 47539878 A T ELP6 Missense_Mutation p.D190E 0.25 tolerated(0.06) probably_damaging(0.914) TCGA-EE-A29M-06 3 4759072 4759072 G A ITPR1 Missense_Mutation p.D1694N 0.41 tolerated_low_confidence(0.57) benign(0) TCGA-EE-A29M-06 3 47629650 47629650 C T SMARCC1 3'UTR 0.26 TCGA-EE-A29M-06 3 47629651 47629651 C T SMARCC1 3'UTR 0.26 TCGA-EE-A29M-06 3 48419850 48419850 C T FBXW12 Missense_Mutation p.S150L 0.39 tolerated(0.33) benign(0) TCGA-EE-A29M-06 3 48460685 48460685 G A PLXNB1 Missense_Mutation p.R934W 0.48 deleterious(0.05) benign(0.386) TCGA-EE-A29M-06 3 48619788 48619788 C T COL7A1 Missense_Mutation p.E1535K 0.42 unknown(0) TCGA-EE-A29M-06 3 48663784 48663784 G A SLC26A6 Missense_Mutation p.P711L 0.22 tolerated(0.29) benign(0.133) TCGA-EE-A29M-06 3 48691867 48691867 G A CELSR3 Silent p.G1669G 0.36 TCGA-EE-A29M-06 3 49949127 49949127 C T MON1A Missense_Mutation p.E246K 0.45 tolerated(0.09) possibly_damaging(0.453) TCGA-EE-A29M-06 3 50220954 50220954 G A SEMA3F Nonsense_Mutation p.W397* 0.19 TCGA-EE-A29M-06 3 50363596 50363596 G A TUSC2 Missense_Mutation p.P97S 0.39 deleterious(0.02) benign(0.052) TCGA-EE-A29M-06 3 50413429 50413429 G A CACNA2D2 Silent p.L580L 0.24 TCGA-EE-A29M-06 3 50513579 50513579 C T CACNA2D2 Silent p.R86R 0.16 TCGA-EE-A29M-06 3 50615261 50615261 C T HEMK1 Missense_Mutation p.R207W 0.46 deleterious(0.02) possibly_damaging(0.512) TCGA-EE-A29M-06 3 51196675 51196675 G A DOCK3 Missense_Mutation p.D277N 0.24 deleterious(0) probably_damaging(0.959) TCGA-EE-A29M-06 3 51196700 51196700 G A DOCK3 Missense_Mutation p.R285K 0.42 tolerated(0.68) benign(0.001) TCGA-EE-A29M-06 3 51284163 51284163 C T DOCK3 Silent p.L703L 0.21 TCGA-EE-A29M-06 3 5249907 5249907 C T EDEM1 Silent p.L490L 0.19 TCGA-EE-A29M-06 3 52558517 52558517 G A NT5DC2 Missense_Mutation p.P548L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29M-06 3 53153976 53153976 G A RFT1 Missense_Mutation p.S207F 0.23 deleterious(0.02) benign(0.062) TCGA-EE-A29M-06 3 56044613 56044613 C T ERC2 Missense_Mutation p.R595K 0.26 tolerated(0.28) benign(0.371) TCGA-EE-A29M-06 3 58154221 58154221 C T FLNB Missense_Mutation p.S2449F 0.43 deleterious(0.01) possibly_damaging(0.857) TCGA-EE-A29M-06 3 58155360 58155360 C T FLNB Silent p.S2518S 0.19 TCGA-EE-A29M-06 3 58395827 58395827 G A PXK Missense_Mutation p.R469Q 0.26 tolerated(0.73) benign(0.019) TCGA-EE-A29M-06 3 58519830 58519830 G A ACOX2 Silent p.F122F 0.42 TCGA-EE-A29M-06 3 58639463 58639463 C T FAM3D Nonsense_Mutation p.W20* 0.19 TCGA-EE-A29M-06 3 62204553 62204553 C T PTPRG Silent p.S728S 0.43 TCGA-EE-A29M-06 3 62501818 62501818 C T CADPS Missense_Mutation p.E833K 0.21 deleterious(0) benign(0.292) TCGA-EE-A29M-06 3 62501819 62501819 C T CADPS Silent p.E832E 0.21 TCGA-EE-A29M-06 3 65346841 65346841 G A MAGI1 Intron 0.39 TCGA-EE-A29M-06 3 68934447 68934447 C T FAM19A4 5'UTR 0.42 TCGA-EE-A29M-06 3 7188330 7188330 C T GRM7 Silent p.S237S 0.43 TCGA-EE-A29M-06 3 73024410 73024410 C T GXYLT2 3'UTR 0.43 TCGA-EE-A29M-06 3 78710221 78710221 C T ROBO1 Missense_Mutation p.G760E 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 3 8590280 8590280 C T LMCD1 Silent p.P138P 0.47 TCGA-EE-A29M-06 3 87313549 87313549 C T POU1F1 Missense_Mutation p.E136K 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.709) TCGA-EE-A29M-06 3 8809555 8809555 C T OXTR Missense_Mutation p.G107R 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29M-06 3 88188717 88188717 C T ZNF654 Missense_Mutation p.S86F 0.20 tolerated(0.06) benign(0.009) TCGA-EE-A29M-06 3 89462371 89462371 G A EPHA3 Missense_Mutation p.E615K 0.17 deleterious(0) benign(0.174) TCGA-EE-A29M-06 3 9027574 9027574 C T SRGAP3 Missense_Mutation p.E977K 0.42 tolerated_low_confidence(0.11) probably_damaging(0.986) TCGA-EE-A29M-06 3 97631107 97631107 G A CRYBG3 Missense_Mutation p.V753I 0.38 deleterious(0.02) possibly_damaging(0.6) TCGA-EE-A29M-06 3 97852004 97852004 C T OR5H1 Missense_Mutation p.H155Y 0.18 deleterious(0) benign(0.16) TCGA-EE-A29M-06 3 98216522 98216522 G A OR5K2 5'UTR 0.21 TCGA-EE-A29M-06 3 98216523 98216523 G A OR5K2 5'UTR 0.21 TCGA-EE-A29M-06 3 9831435 9831435 G A TADA3 Silent p.I140I 0.21 TCGA-EE-A29M-06 4 100006318 100006318 G A ADH5 Missense_Mutation p.S21F 0.35 deleterious(0) possibly_damaging(0.82) TCGA-EE-A29M-06 4 100045511 100045511 C T ADH4 3'UTR 0.33 TCGA-EE-A29M-06 4 100125387 100125387 G A ADH6 Silent p.L373L 0.17 TCGA-EE-A29M-06 4 100128614 100128614 G A ADH6 Missense_Mutation p.S318F 0.16 deleterious(0) possibly_damaging(0.652) TCGA-EE-A29M-06 4 100341927 100341927 G A ADH7 Silent p.V216V 0.21 TCGA-EE-A29M-06 4 101386648 101386648 G A EMCN Missense_Mutation p.S103L 0.25 tolerated(0.06) possibly_damaging(0.896) TCGA-EE-A29M-06 4 104512783 104512783 G A TACR3 Missense_Mutation p.H316Y 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 106861297 106861297 G A NPNT Missense_Mutation p.G221R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 106861298 106861298 G A NPNT Missense_Mutation p.G221E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 109002741 109002741 C T LEF1 Splice_Site p.X241_splice 0.17 TCGA-EE-A29M-06 4 109002742 109002742 C T LEF1 Missense_Mutation p.R241K 0.16 deleterious(0.02) benign(0.004) TCGA-EE-A29M-06 4 109546299 109546299 C T RPL34 Silent p.F95F 0.32 TCGA-EE-A29M-06 4 109780827 109780827 G A COL25A1 Silent p.L435L 0.29 TCGA-EE-A29M-06 4 111397602 111397602 G A ENPEP Missense_Mutation p.R11K 0.15 tolerated_low_confidence(0.24) benign(0.01) TCGA-EE-A29M-06 4 114274809 114274809 G A ANK2 Missense_Mutation p.G1679R 0.11 benign(0.027) TCGA-EE-A29M-06 4 118975183 118975183 G A NDST3 Missense_Mutation p.E40K 0.16 tolerated_low_confidence(0.65) benign(0.109) TCGA-EE-A29M-06 4 119978661 119978661 G A SYNPO2 Missense_Mutation p.D1120N 0.35 tolerated(0.42) benign(0.018) TCGA-EE-A29M-06 4 121958281 121958281 G A NDNF Missense_Mutation p.S282F 0.30 tolerated(0.08) benign(0.044) TCGA-EE-A29M-06 4 122068317 122068317 C T TNIP3 Missense_Mutation p.E285K 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 4 122250649 122250649 C T QRFPR Silent p.K372K 0.12 TCGA-EE-A29M-06 4 123145765 123145765 C T KIAA1109 Missense_Mutation p.S909F 0.17 benign(0.309) TCGA-EE-A29M-06 4 125590704 125590704 C T ANKRD50 Missense_Mutation p.G1243E 0.31 tolerated(0.08) benign(0.01) TCGA-EE-A29M-06 4 126329693 126329693 C T FAT4 Silent p.I1888I 0.18 TCGA-EE-A29M-06 4 126411285 126411285 G A FAT4 Silent p.Q4436Q 0.36 TCGA-EE-A29M-06 4 13339612 13339612 G A HSP90AB2P RNA 0.27 TCGA-EE-A29M-06 4 138451960 138451960 C T PCDH18 Missense_Mutation p.R428K 0.33 tolerated(0.28) benign(0.381) TCGA-EE-A29M-06 4 140299993 140299993 C T NAA15 Missense_Mutation p.R714C 0.32 deleterious(0) possibly_damaging(0.88) TCGA-EE-A29M-06 4 141847198 141847198 G A RNF150 Missense_Mutation p.P307L 0.25 deleterious(0) benign(0.059) TCGA-EE-A29M-06 4 144136165 144136165 C T USP38 Intron 0.25 TCGA-EE-A29M-06 4 146065546 146065546 G A OTUD4 Missense_Mutation p.P423L 0.18 tolerated(0.21) benign(0.075) TCGA-EE-A29M-06 4 146700653 146700653 C T ZNF827 Silent p.K798K 0.38 TCGA-EE-A29M-06 4 147438251 147438251 G A SLC10A7 Missense_Mutation p.T41I 0.32 deleterious(0) probably_damaging(0.972) TCGA-EE-A29M-06 4 147561220 147561220 C T POU4F2 Missense_Mutation p.P164S 0.15 tolerated_low_confidence(0.1) probably_damaging(0.968) TCGA-EE-A29M-06 4 148887969 148887969 C T ARHGAP10 Silent p.I565I 0.23 TCGA-EE-A29M-06 4 153564299 153564299 G A TMEM154 Missense_Mutation p.S140F 0.15 deleterious(0) probably_damaging(0.919) TCGA-EE-A29M-06 4 155249265 155249265 A G DCHS2 Missense_Mutation p.V878A 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A29M-06 4 15529154 15529154 G A CC2D2A Missense_Mutation p.G412R 0.37 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29M-06 4 155491730 155491730 G A FGB Missense_Mutation p.M468I 0.37 tolerated(0.05) possibly_damaging(0.518) TCGA-EE-A29M-06 4 155507797 155507797 C T FGA Missense_Mutation p.E262K 0.14 deleterious(0) benign(0.292) TCGA-EE-A29M-06 4 155528085 155528085 G C FGG Missense_Mutation p.R301G 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 155718046 155718046 C T RBM46 Missense_Mutation p.P48S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 4 156135439 156135439 G A NPY2R Nonsense_Mutation p.W116* 0.38 TCGA-EE-A29M-06 4 156632278 156632278 G A GUCY1A3 Missense_Mutation p.E321K 0.24 tolerated(0.21) benign(0.089) TCGA-EE-A29M-06 4 156773440 156773440 C T ASIC5 Missense_Mutation p.G205E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 158041795 158041795 G A GLRB Silent p.R70R 0.14 TCGA-EE-A29M-06 4 158254081 158254081 G C GRIA2 Silent p.L331L 0.16 TCGA-EE-A29M-06 4 160264545 160264545 G A RAPGEF2 Missense_Mutation p.M920I 0.15 deleterious(0.03) benign(0.056) TCGA-EE-A29M-06 4 16037363 16037363 G C PROM1 Missense_Mutation p.L100V 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29M-06 4 164247687 164247687 G A NPY1R Missense_Mutation p.S7F 0.33 tolerated(0.71) benign(0) TCGA-EE-A29M-06 4 164393517 164393517 G A TKTL2 Missense_Mutation p.S457L 0.16 deleterious(0.02) benign(0.323) TCGA-EE-A29M-06 4 164394139 164394139 G A TKTL2 Missense_Mutation p.R250W 0.39 deleterious(0.02) benign(0.323) TCGA-EE-A29M-06 4 164394754 164394754 C T TKTL2 Missense_Mutation p.A45T 0.19 deleterious(0.03) benign(0.048) TCGA-EE-A29M-06 4 164534672 164534672 G A MARCH1 Intron 0.43 TCGA-EE-A29M-06 4 165961516 165961516 G A TRIM60 Missense_Mutation p.E98K 0.31 tolerated(0.2) benign(0.096) TCGA-EE-A29M-06 4 165962642 165962642 G A TRIM60 3'UTR 0.48 TCGA-EE-A29M-06 4 16597450 16597450 C T LDB2 Missense_Mutation p.G95E 0.19 deleterious(0) probably_damaging(0.934) TCGA-EE-A29M-06 4 1670618 1670618 C T FAM53A 5'UTR 0.56 TCGA-EE-A29M-06 4 168155141 168155141 G A SPOCK3 Nonsense_Mutation p.R62* 0.14 TCGA-EE-A29M-06 4 169049279 169049279 G A ANXA10 Missense_Mutation p.M21I 0.47 tolerated(0.19) benign(0.004) TCGA-EE-A29M-06 4 169188759 169188759 G A DDX60 Missense_Mutation p.P1005S 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 4 169300898 169300898 G A DDX60L Silent p.S1400S 0.14 TCGA-EE-A29M-06 4 1742580 1742580 C T TACC3 Missense_Mutation p.S697F 0.20 deleterious(0) benign(0.389) TCGA-EE-A29M-06 4 1801056 1801056 C T FGFR3 Missense_Mutation p.P62L 0.20 tolerated(0.35) benign(0.026) TCGA-EE-A29M-06 4 183673086 183673086 G A TENM3 Missense_Mutation p.E1255K 0.19 deleterious(0.02) benign(0.021) TCGA-EE-A29M-06 4 183717822 183717822 C T TENM3 Missense_Mutation p.H2416Y 0.38 deleterious(0.01) benign(0.253) TCGA-EE-A29M-06 4 184431602 184431602 C T ING2 Missense_Mutation p.R114W 0.12 deleterious(0) probably_damaging(0.984) TCGA-EE-A29M-06 4 185038965 185038965 C T ENPP6 Missense_Mutation p.D208N 0.18 tolerated(0.51) benign(0.005) TCGA-EE-A29M-06 4 187158058 187158058 C T KLKB1 Missense_Mutation p.S151L 0.30 deleterious(0) benign(0.167) TCGA-EE-A29M-06 4 187454828 187454828 G A MTNR1A 3'UTR 0.36 TCGA-EE-A29M-06 4 187517878 187517878 G A FAT1 Silent p.S4272S 0.22 TCGA-EE-A29M-06 4 189020328 189020328 C T TRIML2 Missense_Mutation p.R111K 0.14 tolerated(0.37) benign(0.101) TCGA-EE-A29M-06 4 189060973 189060973 G A TRIML1 Silent p.Q87Q 0.30 TCGA-EE-A29M-06 4 189068214 189068214 G A TRIML1 Silent p.K365K 0.13 TCGA-EE-A29M-06 4 1920067 1920067 C T WHSC1 Missense_Mutation p.S376F 0.24 tolerated(0.07) benign(0.14) TCGA-EE-A29M-06 4 20569199 20569199 G A SLIT2 Missense_Mutation p.G970E 0.17 deleterious(0) probably_damaging(0.939) TCGA-EE-A29M-06 4 20620710 20620710 G A SLIT2 3'UTR 0.18 TCGA-EE-A29M-06 4 23815818 23815818 C T PPARGC1A Missense_Mutation p.D430N 0.15 tolerated(0.27) benign(0.013) TCGA-EE-A29M-06 4 25005844 25005844 G A LGI2 Silent p.V289V 0.17 TCGA-EE-A29M-06 4 25419792 25419792 C T ANAPC4 Missense_Mutation p.R739C 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 26744166 26744166 C G TBC1D19 Missense_Mutation p.L422V 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29M-06 4 2994003 2994003 G A GRK4 Missense_Mutation p.R108K 0.14 tolerated(1) benign(0.002) TCGA-EE-A29M-06 4 3201562 3201562 C T HTT Silent p.S1824S 0.31 TCGA-EE-A29M-06 4 3240606 3240606 C T HTT Missense_Mutation p.S3039F 0.22 probably_damaging(0.999) TCGA-EE-A29M-06 4 36168569 36168569 G A ARAP2 Missense_Mutation p.P653L 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-EE-A29M-06 4 36168570 36168570 G A ARAP2 Missense_Mutation p.P653S 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 4 40776902 40776902 C T NSUN7 Missense_Mutation p.P254S 0.31 deleterious(0) possibly_damaging(0.748) TCGA-EE-A29M-06 4 41648700 41648700 C T LIMCH1 Silent p.P485P 0.13 TCGA-EE-A29M-06 4 41684366 41684366 G A LIMCH1 Missense_Mutation p.G861E 0.24 tolerated(1) benign(0) TCGA-EE-A29M-06 4 41748160 41748160 G A PHOX2B Silent p.N203N 0.23 TCGA-EE-A29M-06 4 42065032 42065032 C T SLC30A9 Missense_Mutation p.S309F 0.15 deleterious(0.01) benign(0.016) TCGA-EE-A29M-06 4 43032575 43032575 G A GRXCR1 3'UTR 0.09 TCGA-EE-A29M-06 4 46252529 46252529 G A GABRA2 Silent p.L384L 0.32 TCGA-EE-A29M-06 4 47625936 47625936 G A CORIN Missense_Mutation p.S782F 0.32 deleterious(0) probably_damaging(0.966) TCGA-EE-A29M-06 4 48584556 48584556 C T FRYL Nonsense_Mutation p.W648* 0.16 TCGA-EE-A29M-06 4 48604129 48604129 G A FRYL Missense_Mutation p.P315S 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29M-06 4 52860987 52860987 G A LRRC66 Missense_Mutation p.S734F 0.17 deleterious(0.03) benign(0.004) TCGA-EE-A29M-06 4 52862276 52862276 G A LRRC66 Silent p.R304R 0.33 TCGA-EE-A29M-06 4 53249 53249 G A ZNF595 5'UTR 0.07 TCGA-EE-A29M-06 4 54968083 54968083 C T GSX2 Silent p.P303P 0.35 TCGA-EE-A29M-06 4 55156545 55156545 G A PDGFRA Silent p.V982V 0.27 TCGA-EE-A29M-06 4 56471445 56471445 C T NMU Silent p.V144V 0.14 TCGA-EE-A29M-06 4 5851179 5851179 G A CRMP1 Silent p.F301F 0.38 TCGA-EE-A29M-06 4 5975479 5975479 C T C4orf50 Silent p.G579G 0.32 TCGA-EE-A29M-06 4 69101771 69101771 T C TMPRSS11B Missense_Mutation p.Q86R 0.19 tolerated(0.15) benign(0.417) TCGA-EE-A29M-06 4 69182129 69182129 G A YTHDC1 Missense_Mutation p.P621L 0.27 tolerated(0.07) benign(0.028) TCGA-EE-A29M-06 4 69182130 69182130 G A YTHDC1 Missense_Mutation p.P621S 0.27 deleterious(0.03) benign(0.281) TCGA-EE-A29M-06 4 69362538 69362538 T C TMPRSS11E 3'UTR 0.16 TCGA-EE-A29M-06 4 69681805 69681805 G A UGT2B10 Missense_Mutation p.G23E 0.19 deleterious(0.05) possibly_damaging(0.823) TCGA-EE-A29M-06 4 69683824 69683824 C T UGT2B10 Missense_Mutation p.P266S 0.28 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A29M-06 4 69696714 69696714 G A UGT2B10 3'UTR 0.56 TCGA-EE-A29M-06 4 69816878 69816878 C T UGT2A3 Missense_Mutation p.D201N 0.20 deleterious(0.03) possibly_damaging(0.904) TCGA-EE-A29M-06 4 70078291 70078291 C T UGT2B11 Silent p.K290K 0.08 TCGA-EE-A29M-06 4 70146563 70146563 C T UGT2B28 Silent p.I115I 0.08 TCGA-EE-A29M-06 4 70455308 70455308 C T UGT2A1 Missense_Mutation p.D622N 0.33 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A29M-06 4 71024317 71024317 G A C4orf40 Silent p.R116R 0.34 TCGA-EE-A29M-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.25 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-EE-A29M-06 4 71500027 71500027 G A ENAM Missense_Mutation p.M71I 0.13 deleterious(0.01) benign(0.032) TCGA-EE-A29M-06 4 71509961 71509961 G A ENAM Missense_Mutation p.E940K 0.30 tolerated(0.05) probably_damaging(1) TCGA-EE-A29M-06 4 73013193 73013193 C T NPFFR2 Silent p.I411I 0.14 TCGA-EE-A29M-06 4 74318255 74318255 C T AFP Silent p.V522V 0.12 TCGA-EE-A29M-06 4 74347571 74347571 C T AFM Missense_Mutation p.R27W 0.33 deleterious(0.01) benign(0.023) TCGA-EE-A29M-06 4 74453570 74453570 C T RASSF6 Silent p.R155R 0.30 TCGA-EE-A29M-06 4 74853706 74853706 C T PPBP Missense_Mutation p.G39R 0.38 tolerated(0.07) benign(0.412) TCGA-EE-A29M-06 4 77300459 77300459 C T CCDC158 Missense_Mutation p.R338K 0.14 tolerated(0.11) probably_damaging(0.954) TCGA-EE-A29M-06 4 77660215 77660215 G T SHROOM3 Nonsense_Mutation p.E297* 0.16 TCGA-EE-A29M-06 4 78528937 78528937 G A CXCL13 Missense_Mutation p.D49N 0.29 tolerated(0.14) possibly_damaging(0.765) TCGA-EE-A29M-06 4 78783866 78783866 C T MRPL1 5'UTR 0.33 TCGA-EE-A29M-06 4 79387520 79387520 G A FRAS1 Silent p.K2396K 0.31 TCGA-EE-A29M-06 4 8009634 8009634 C T ABLIM2 Intron 0.35 TCGA-EE-A29M-06 4 80328367 80328367 G A GK2 Missense_Mutation p.R330C 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A29M-06 4 81974744 81974744 G A BMP3 3'UTR 0.38 TCGA-EE-A29M-06 4 84234441 84234441 C T HPSE Splice_Site p.X167_splice 0.34 TCGA-EE-A29M-06 4 853510 853510 C T GAK Missense_Mutation p.G1056D 0.15 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A29M-06 4 853511 853511 C T GAK Splice_Site p.X1056_splice 0.15 TCGA-EE-A29M-06 4 85564253 85564253 G A CDS1 Missense_Mutation p.G370E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 4 85645656 85645656 G A WDFY3 Missense_Mutation p.A2455V 0.27 tolerated(0.22) benign(0.01) TCGA-EE-A29M-06 4 8582718 8582718 C T GPR78 Silent p.P3P 0.29 TCGA-EE-A29M-06 4 88583217 88583217 G A DMP1 Missense_Mutation p.G96E 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29M-06 4 88766263 88766263 G A MEPE Silent p.K81K 0.20 TCGA-EE-A29M-06 4 88766951 88766951 G A MEPE Missense_Mutation p.E311K 0.30 tolerated(0.31) benign(0.004) TCGA-EE-A29M-06 4 89384700 89384700 C T HERC5 Missense_Mutation p.L236F 0.17 tolerated(0.71) probably_damaging(0.966) TCGA-EE-A29M-06 4 961348 961348 C T DGKQ Missense_Mutation p.E326K 0.33 deleterious(0.05) benign(0.052) TCGA-EE-A29M-06 4 98480257 98480257 C T STPG2 Silent p.E444E 0.32 TCGA-EE-A29M-06 5 10227514 10227514 G A FAM173B 3'UTR 0.21 TCGA-EE-A29M-06 5 102509599 102509599 C T PPIP5K2 Missense_Mutation p.R818C 0.30 deleterious(0) probably_damaging(0.964) TCGA-EE-A29M-06 5 10290680 10290680 C T CMBL Missense_Mutation p.M65I 0.31 tolerated(0.07) benign(0.093) TCGA-EE-A29M-06 5 10992789 10992789 C T CTNND2 Missense_Mutation p.D1029N 0.20 deleterious(0.02) benign(0.253) TCGA-EE-A29M-06 5 11098815 11098815 C T CTNND2 Missense_Mutation p.G837R 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29M-06 5 112720857 112720857 C T MCC Missense_Mutation p.E75K 0.44 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-EE-A29M-06 5 121758579 121758579 G A SNCAIP Nonsense_Mutation p.W49* 0.32 TCGA-EE-A29M-06 5 126887640 126887640 C T PRRC1 3'UTR 0.40 TCGA-EE-A29M-06 5 126993181 126993181 C T CTXN3 5'UTR 0.26 TCGA-EE-A29M-06 5 126993429 126993429 G A CTXN3 Silent p.E72E 0.31 TCGA-EE-A29M-06 5 126993430 126993430 A C CTXN3 Missense_Mutation p.K73Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29M-06 5 127610313 127610313 C T FBN2 Missense_Mutation p.G2553R 0.41 deleterious(0) probably_damaging(0.925) TCGA-EE-A29M-06 5 128320946 128320946 C T SLC27A6 Missense_Mutation p.P201L 0.38 deleterious(0) benign(0.142) TCGA-EE-A29M-06 5 131647922 131647922 C T SLC22A4 Silent p.L154L 0.45 TCGA-EE-A29M-06 5 131647923 131647923 C T SLC22A4 Missense_Mutation p.L155F 0.44 tolerated(0.31) benign(0.008) TCGA-EE-A29M-06 5 132736599 132736599 C T FSTL4 Silent p.R80R 0.45 TCGA-EE-A29M-06 5 1338079 1338079 G A CLPTM1L Silent p.T206T 0.23 TCGA-EE-A29M-06 5 134076939 134076939 C T CAMLG Missense_Mutation p.P120L 0.37 deleterious_low_confidence(0.01) benign(0.276) TCGA-EE-A29M-06 5 134102613 134102613 C T DDX46 Silent p.S71S 0.45 TCGA-EE-A29M-06 5 135602062 135602062 G A TRPC7 Silent p.I397I 0.42 TCGA-EE-A29M-06 5 135692503 135692503 C G TRPC7 Missense_Mutation p.E191D 0.33 tolerated(0.27) benign(0.008) TCGA-EE-A29M-06 5 135692631 135692631 C T TRPC7 Missense_Mutation p.D149N 0.48 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29M-06 5 13692205 13692205 T C DNAH5 Missense_Mutation p.K4588R 0.32 possibly_damaging(0.621) TCGA-EE-A29M-06 5 13701465 13701465 G A DNAH5 Silent p.F4473F 0.30 TCGA-EE-A29M-06 5 13721244 13721244 G A DNAH5 Silent p.L4048L 0.26 TCGA-EE-A29M-06 5 13727711 13727711 C T DNAH5 Missense_Mutation p.E3980K 0.19 possibly_damaging(0.621) TCGA-EE-A29M-06 5 13727712 13727712 C T DNAH5 Silent p.E3979E 0.18 TCGA-EE-A29M-06 5 13759062 13759062 G A DNAH5 Missense_Mutation p.L3438F 0.31 benign(0.023) TCGA-EE-A29M-06 5 13781069 13781069 C T DNAH5 Splice_Site p.X2941_splice 0.25 TCGA-EE-A29M-06 5 13793828 13793828 C T DNAH5 Missense_Mutation p.E2674K 0.27 possibly_damaging(0.621) TCGA-EE-A29M-06 5 13817791 13817791 G A DNAH5 Missense_Mutation p.P2285L 0.30 possibly_damaging(0.908) TCGA-EE-A29M-06 5 13829789 13829789 C T DNAH5 Missense_Mutation p.E2092K 0.22 possibly_damaging(0.621) TCGA-EE-A29M-06 5 13845060 13845060 G A DNAH5 Silent p.F1719F 0.30 TCGA-EE-A29M-06 5 13871743 13871743 G A DNAH5 Silent p.F1176F 0.28 TCGA-EE-A29M-06 5 13900318 13900318 C T DNAH5 Missense_Mutation p.M752I 0.35 benign(0.072) TCGA-EE-A29M-06 5 13901576 13901576 C T DNAH5 Missense_Mutation p.D613N 0.36 possibly_damaging(0.831) TCGA-EE-A29M-06 5 13931251 13931251 C T DNAH5 Missense_Mutation p.E54K 0.27 benign(0.418) TCGA-EE-A29M-06 5 139740450 139740450 C T SLC4A9 Missense_Mutation p.P119L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 5 140176493 140176493 C T PCDHA2 Silent p.L648L 0.37 TCGA-EE-A29M-06 5 140182649 140182649 C T PCDHA3 Missense_Mutation p.R623C 0.39 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-EE-A29M-06 5 140203745 140203745 C A PCDHA5 Intron 0.33 TCGA-EE-A29M-06 5 140214793 140214793 G A PCDHA7 Silent p.G275G 0.26 TCGA-EE-A29M-06 5 140221930 140221930 G A PCDHA8 Missense_Mutation p.D342N 0.38 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A29M-06 5 140230393 140230393 C T PCDHA9 Silent p.A771A 0.57 TCGA-EE-A29M-06 5 140263676 140263676 C T PCDHA13 Missense_Mutation p.S608L 0.37 deleterious_low_confidence(0.01) benign(0.219) TCGA-EE-A29M-06 5 140347685 140347685 G A PCDHAC2 Missense_Mutation p.G445E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 5 140475497 140475497 C T PCDHB2 Missense_Mutation p.P375S 0.39 tolerated_low_confidence(0.25) benign(0.009) TCGA-EE-A29M-06 5 140482603 140482603 G A PCDHB3 Silent p.R790R 0.27 TCGA-EE-A29M-06 5 140502889 140502889 A C PCDHB4 Missense_Mutation p.T437P 0.38 deleterious(0) possibly_damaging(0.821) TCGA-EE-A29M-06 5 140515737 140515737 G A PCDHB5 Missense_Mutation p.E241K 0.39 deleterious_low_confidence(0.04) benign(0.01) TCGA-EE-A29M-06 5 140552747 140552747 G A PCDHB7 Missense_Mutation p.E111K 0.44 tolerated_low_confidence(0.26) benign(0.014) TCGA-EE-A29M-06 5 140553172 140553172 C T PCDHB7 Silent p.P252P 0.40 TCGA-EE-A29M-06 5 140554679 140554679 G A PCDHB7 Missense_Mutation p.G755R 0.14 deleterious_low_confidence(0.03) benign(0.324) TCGA-EE-A29M-06 5 140558177 140558177 G A PCDHB8 Missense_Mutation p.D188N 0.13 deleterious_low_confidence(0.03) benign(0.055) TCGA-EE-A29M-06 5 140564245 140564245 C T PCDHB16 Missense_Mutation p.S704L 0.39 deleterious_low_confidence(0) benign(0.021) TCGA-EE-A29M-06 5 140572734 140572734 G A PCDHB10 Silent p.E203E 0.36 TCGA-EE-A29M-06 5 140589169 140589169 G A PCDHB12 Silent p.V230V 0.42 TCGA-EE-A29M-06 5 140589279 140589279 G A PCDHB12 Nonsense_Mutation p.W267* 0.32 TCGA-EE-A29M-06 5 140593826 140593826 C T PCDHB13 Missense_Mutation p.S44F 0.17 tolerated_low_confidence(0.12) benign(0.346) TCGA-EE-A29M-06 5 140594140 140594140 C T PCDHB13 Missense_Mutation p.P149S 0.38 tolerated_low_confidence(0.11) benign(0.047) TCGA-EE-A29M-06 5 140594835 140594835 G A PCDHB13 Silent p.G380G 0.45 TCGA-EE-A29M-06 5 140626826 140626826 C T PCDHB15 Silent p.F560F 0.43 TCGA-EE-A29M-06 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.43 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-EE-A29M-06 5 140720281 140720281 C T PCDHGA2 Silent p.S581S 0.39 TCGA-EE-A29M-06 5 140734935 140734935 C T PCDHGA4 Silent p.P56P 0.35 TCGA-EE-A29M-06 5 140783933 140783933 T C PCDHGA9 Missense_Mutation p.F472L 0.45 tolerated_low_confidence(0.09) benign(0.057) TCGA-EE-A29M-06 5 140866990 140866990 C T PCDHGC4 Silent p.L750L 0.32 TCGA-EE-A29M-06 5 141051140 141051140 G A ARAP3 Silent p.L617L 0.39 TCGA-EE-A29M-06 5 141233788 141233788 C T PCDH1 Missense_Mutation p.R1178Q 0.50 tolerated(0.09) benign(0.32) TCGA-EE-A29M-06 5 143200156 143200156 G A HMHB1 3'UTR 0.44 TCGA-EE-A29M-06 5 1441511 1441511 C T SLC6A3 Silent p.G127G 0.26 TCGA-EE-A29M-06 5 1443052 1443052 G A SLC6A3 Silent p.P87P 0.25 TCGA-EE-A29M-06 5 145252327 145252327 C T GRXCR2 Missense_Mutation p.E69K 0.34 deleterious(0.02) benign(0.364) TCGA-EE-A29M-06 5 147051374 147051374 C T JAKMIP2 5'UTR 0.43 TCGA-EE-A29M-06 5 147582695 147582695 G A SPINK6 Silent p.L12L 0.25 TCGA-EE-A29M-06 5 149460515 149460515 C T CSF1R Missense_Mutation p.R41Q 0.43 tolerated(0.06) possibly_damaging(0.518) TCGA-EE-A29M-06 5 149775884 149775884 C T TCOF1 Missense_Mutation p.S1274F 0.37 deleterious(0) probably_damaging(0.925) TCGA-EE-A29M-06 5 151179453 151179453 C T G3BP1 Missense_Mutation p.R283C 0.42 tolerated(0.09) benign(0) TCGA-EE-A29M-06 5 154270981 154270981 G A GEMIN5 Missense_Mutation p.S1361L 0.40 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29M-06 5 154296622 154296622 G A GEMIN5 Silent p.S597S 0.38 TCGA-EE-A29M-06 5 154395876 154395876 G A KIF4B Silent p.Q819Q 0.37 TCGA-EE-A29M-06 5 156381661 156381661 C T TIMD4 Silent p.G55G 0.39 TCGA-EE-A29M-06 5 156899650 156899650 C G NIPAL4 Nonsense_Mutation p.Y361* 0.34 TCGA-EE-A29M-06 5 156915375 156915375 C T ADAM19 Silent p.R816R 0.43 TCGA-EE-A29M-06 5 159776622 159776622 G A C1QTNF2 Silent p.L182L 0.39 TCGA-EE-A29M-06 5 160039886 160039886 C T ATP10B Silent p.T900T 0.40 TCGA-EE-A29M-06 5 160886667 160886667 G A GABRB2 Missense_Mutation p.R141C 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 5 161116026 161116026 G A GABRA6 Silent p.E99E 0.39 TCGA-EE-A29M-06 5 16463741 16463741 G A ZNF622 Missense_Mutation p.L246F 0.29 tolerated(0.25) benign(0.092) TCGA-EE-A29M-06 5 167850906 167850906 C T WWC1 Missense_Mutation p.S548F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 5 168093669 168093669 G A SLIT3 Silent p.V1454V 0.34 TCGA-EE-A29M-06 5 170667965 170667965 A T RANBP17 Missense_Mutation p.K819I 0.33 deleterious(0.03) benign(0.276) TCGA-EE-A29M-06 5 176696740 176696740 C T NSD1 Missense_Mutation p.P1814L 0.37 tolerated(0.1) possibly_damaging(0.613) TCGA-EE-A29M-06 5 178413173 178413173 G T GRM6 Silent p.P694P 0.35 TCGA-EE-A29M-06 5 178413174 178413174 G A GRM6 Missense_Mutation p.P694L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 5 179201462 179201462 C T MAML1 Missense_Mutation p.P879S 0.32 tolerated(0.17) benign(0.004) TCGA-EE-A29M-06 5 180420152 180420152 G A BTNL3 Missense_Mutation p.R130Q 0.27 tolerated(1) benign(0.001) TCGA-EE-A29M-06 5 180432727 180432727 C T BTNL3 Missense_Mutation p.S419F 0.35 deleterious(0.02) possibly_damaging(0.774) TCGA-EE-A29M-06 5 19591224 19591224 C T CDH18 Missense_Mutation p.G314E 0.29 tolerated(0.53) possibly_damaging(0.52) TCGA-EE-A29M-06 5 19591256 19591256 C T CDH18 Missense_Mutation p.M303I 0.21 tolerated(0.26) benign(0.004) TCGA-EE-A29M-06 5 21461940 21461940 G A GUSBP1 RNA 0.36 TCGA-EE-A29M-06 5 21752268 21752268 C T CDH12 Missense_Mutation p.D655N 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 5 23509152 23509152 G A PRDM9 Missense_Mutation p.E4K 0.21 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A29M-06 5 23510112 23510112 G A PRDM9 Missense_Mutation p.E93K 0.20 deleterious_low_confidence(0) benign(0.013) TCGA-EE-A29M-06 5 23522461 23522461 G A PRDM9 Missense_Mutation p.R186K 0.22 deleterious(0) possibly_damaging(0.458) TCGA-EE-A29M-06 5 26881634 26881634 C T CDH9 Missense_Mutation p.D661N 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 5 2749165 2749165 C T IRX2 Silent p.G219G 0.24 TCGA-EE-A29M-06 5 2749629 2749629 C T IRX2 Silent p.K174K 0.30 TCGA-EE-A29M-06 5 31299721 31299721 C T CDH6 Missense_Mutation p.P265L 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 5 31515325 31515325 G A DROSHA Missense_Mutation p.R354C 0.29 deleterious_low_confidence(0) benign(0) TCGA-EE-A29M-06 5 32724811 32724811 C T NPR3 Silent p.I259I 0.22 TCGA-EE-A29M-06 5 34936318 34936318 G A DNAJC21 Missense_Mutation p.E129K 0.24 tolerated(0.16) benign(0.139) TCGA-EE-A29M-06 5 34950309 34950309 G A DNAJC21 Missense_Mutation p.G452E 0.29 tolerated(0.63) benign(0.012) TCGA-EE-A29M-06 5 35065952 35065952 T C PRLR Missense_Mutation p.N370D 0.35 tolerated(0.23) benign(0.004) TCGA-EE-A29M-06 5 35875685 35875685 G A IL7R Missense_Mutation p.R291K 0.14 tolerated(1) benign(0) TCGA-EE-A29M-06 5 35965728 35965728 C T UGT3A1 Silent p.V201V 0.27 TCGA-EE-A29M-06 5 3599405 3599405 C T IRX1 Missense_Mutation p.P115S 0.30 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A29M-06 5 36035968 36035968 C T UGT3A2 Silent p.A468A 0.21 TCGA-EE-A29M-06 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.29 TCGA-EE-A29M-06 5 37121752 37121752 G A C5orf42 Missense_Mutation p.S2997F 0.23 tolerated(0.71) benign(0.002) TCGA-EE-A29M-06 5 38486020 38486020 C T LIFR Missense_Mutation p.D800N 0.26 tolerated(0.12) possibly_damaging(0.685) TCGA-EE-A29M-06 5 38876418 38876418 G A OSMR Silent p.L63L 0.38 TCGA-EE-A29M-06 5 38881752 38881752 G A OSMR Missense_Mutation p.E102K 0.22 tolerated(0.08) benign(0.025) TCGA-EE-A29M-06 5 39110480 39110480 G A FYB Missense_Mutation p.L815F 0.26 deleterious(0) possibly_damaging(0.898) TCGA-EE-A29M-06 5 40681212 40681212 C T PTGER4 Silent p.I39I 0.26 TCGA-EE-A29M-06 5 40853616 40853616 C T CARD6 Silent p.L728L 0.28 TCGA-EE-A29M-06 5 40955571 40955571 G A C7 Silent p.E392E 0.30 TCGA-EE-A29M-06 5 40964859 40964859 T A C7 Missense_Mutation p.F589Y 0.25 tolerated(1) benign(0.013) TCGA-EE-A29M-06 5 40980000 40980000 G A C7 Missense_Mutation p.G780E 0.24 tolerated(1) benign(0.001) TCGA-EE-A29M-06 5 41004463 41004463 C T MROH2B Silent p.R1393R 0.25 TCGA-EE-A29M-06 5 41018857 41018857 C T MROH2B Missense_Mutation p.G870E 0.20 tolerated(0.49) benign(0.041) TCGA-EE-A29M-06 5 41018871 41018871 G A MROH2B Silent p.S865S 0.29 TCGA-EE-A29M-06 5 41065470 41065470 G A MROH2B Silent p.F108F 0.31 TCGA-EE-A29M-06 5 41149420 41149420 C T C6 Missense_Mutation p.R849K 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 5 42718947 42718947 C T GHR Silent p.P446P 0.26 TCGA-EE-A29M-06 5 42719193 42719193 C T GHR Silent p.F528F 0.16 TCGA-EE-A29M-06 5 45262042 45262042 C T HCN1 Missense_Mutation p.R885Q 0.26 deleterious_low_confidence(0) benign(0.062) TCGA-EE-A29M-06 5 45262603 45262603 G A HCN1 Missense_Mutation p.S698F 0.29 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-EE-A29M-06 5 45267263 45267263 C T HCN1 Missense_Mutation p.E571K 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A29M-06 5 45645518 45645518 G A HCN1 Silent p.I206I 0.27 TCGA-EE-A29M-06 5 49695042 49695042 G A EMB 3'UTR 0.36 TCGA-EE-A29M-06 5 49724020 49724020 C T EMB Missense_Mutation p.A52T 0.20 tolerated(0.43) benign(0.003) TCGA-EE-A29M-06 5 52344192 52344192 G A ITGA2 Splice_Site p.X130_splice 0.50 TCGA-EE-A29M-06 5 54420789 54420789 G A CDC20B Missense_Mutation p.R353C 0.45 tolerated(0.25) benign(0.011) TCGA-EE-A29M-06 5 5457799 5457799 C T KIAA0947 Missense_Mutation p.S349L 0.30 tolerated(0.09) probably_damaging(0.984) TCGA-EE-A29M-06 5 5461381 5461381 C T KIAA0947 Missense_Mutation p.P645L 0.29 tolerated(0.07) benign(0.198) TCGA-EE-A29M-06 5 5461387 5461387 C T KIAA0947 Missense_Mutation p.S647F 0.27 tolerated(0.16) benign(0.024) TCGA-EE-A29M-06 5 5464339 5464339 C T KIAA0947 Missense_Mutation p.P1631L 0.22 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 5 55212752 55212752 C T IL31RA Missense_Mutation p.S700F 0.31 tolerated(0.49) possibly_damaging(0.751) TCGA-EE-A29M-06 5 59284325 59284325 C T PDE4D Missense_Mutation p.E88K 0.51 tolerated_low_confidence(0.65) benign(0.012) TCGA-EE-A29M-06 5 64466461 64466461 G A ADAMTS6 Missense_Mutation p.P1076L 0.52 deleterious(0.03) benign(0.133) TCGA-EE-A29M-06 5 68902970 68902970 C T RP11-848G14.2 RNA 0.19 TCGA-EE-A29M-06 5 68903006 68903006 C A RP11-848G14.2 RNA 0.20 TCGA-EE-A29M-06 5 70952669 70952669 C T MCCC2 Silent p.F558F 0.41 TCGA-EE-A29M-06 5 73187937 73187937 G A ARHGEF28 Missense_Mutation p.E1150K 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 5 76700600 76700600 G A PDE8B Silent p.S422S 0.33 TCGA-EE-A29M-06 5 78293893 78293893 G A DMGDH 3'UTR 0.43 TCGA-EE-A29M-06 5 78325774 78325774 C T DMGDH Silent p.G589G 0.31 TCGA-EE-A29M-06 5 79054675 79054675 C T CMYA5 Missense_Mutation p.S3737L 0.33 benign(0.32) TCGA-EE-A29M-06 5 79284378 79284378 G A MTX3 Silent p.I76I 0.35 TCGA-EE-A29M-06 5 80366247 80366247 C T RASGRF2 Intron 0.44 TCGA-EE-A29M-06 5 80369074 80369074 G A RASGRF2 Silent p.Q230Q 0.32 TCGA-EE-A29M-06 5 80640856 80640856 C T ACOT12 Missense_Mutation p.E260K 0.41 deleterious(0) probably_damaging(0.98) TCGA-EE-A29M-06 5 82837715 82837715 G A VCAN Missense_Mutation p.E2965K 0.41 tolerated(0.1) benign(0.045) TCGA-EE-A29M-06 5 86679577 86679577 G A RASA1 Missense_Mutation p.R913Q 0.38 deleterious(0.01) probably_damaging(0.926) TCGA-EE-A29M-06 5 89941810 89941810 C T GPR98 Missense_Mutation p.T975I 0.45 possibly_damaging(0.86) TCGA-EE-A29M-06 5 90084058 90084058 C T GPR98 Silent p.F4608F 0.27 TCGA-EE-A29M-06 5 94248644 94248644 C T MCTP1 Missense_Mutation p.R463K 0.29 tolerated(0.29) benign(0.049) TCGA-EE-A29M-06 5 95728818 95728818 C T PCSK1 Missense_Mutation p.E717K 0.34 deleterious_low_confidence(0.02) benign(0.287) TCGA-EE-A29M-06 5 95757603 95757603 C T PCSK1 Missense_Mutation p.D201N 0.32 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A29M-06 6 100369020 100369020 C T MCHR2 Silent p.V273V 0.44 TCGA-EE-A29M-06 6 102503254 102503254 G A GRIK2 Silent p.E787E 0.32 TCGA-EE-A29M-06 6 109766440 109766440 G A MICAL1 Silent p.A947A 0.33 TCGA-EE-A29M-06 6 110777667 110777667 C T SLC22A16 Intron 0.40 TCGA-EE-A29M-06 6 112671068 112671068 G A RFPL4B Missense_Mutation p.R53Q 0.43 tolerated(0.07) probably_damaging(0.911) TCGA-EE-A29M-06 6 116325089 116325089 G A FRK Silent p.S139S 0.32 TCGA-EE-A29M-06 6 116325090 116325090 G A FRK Missense_Mutation p.S139F 0.32 deleterious(0) possibly_damaging(0.464) TCGA-EE-A29M-06 6 116442864 116442864 C T COL10A1 Missense_Mutation p.G139S 0.41 deleterious(0) unknown(0) TCGA-EE-A29M-06 6 12164527 12164527 C T HIVEP1 Silent p.L2664L 0.30 TCGA-EE-A29M-06 6 125397950 125397950 C T RNF217 Missense_Mutation p.R185C 0.40 deleterious(0) probably_damaging(0.965) TCGA-EE-A29M-06 6 129498907 129498907 C T LAMA2 Missense_Mutation p.R455W 0.50 deleterious(0.01) benign(0.103) TCGA-EE-A29M-06 6 129618834 129618834 G A LAMA2 Missense_Mutation p.G954E 0.29 tolerated(0.19) benign(0.002) TCGA-EE-A29M-06 6 132030774 132030774 C T CTAGE9 Missense_Mutation p.G462R 0.15 deleterious(0) benign(0.242) TCGA-EE-A29M-06 6 132030826 132030826 C T CTAGE9 Silent p.L444L 0.24 TCGA-EE-A29M-06 6 132030942 132030942 C T CTAGE9 Missense_Mutation p.E406K 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A29M-06 6 132204842 132204843 AA - ENPP1 Frame_Shift_Del p.N748Ffs*7 0.26 TCGA-EE-A29M-06 6 133013660 133013660 C T VNN1 Missense_Mutation p.G297E 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A29M-06 6 133767775 133767775 G A EYA4 Missense_Mutation p.E31K 0.41 deleterious(0.01) possibly_damaging(0.693) TCGA-EE-A29M-06 6 134327999 134327999 C T SLC2A12 Missense_Mutation p.M506I 0.37 tolerated(0.2) possibly_damaging(0.823) TCGA-EE-A29M-06 6 136599283 136599283 G A BCLAF1 Missense_Mutation p.P246S 0.08 deleterious(0.04) possibly_damaging(0.803) TCGA-EE-A29M-06 6 144262507 144262507 A G PLAGL1 3'UTR 0.47 TCGA-EE-A29M-06 6 144769802 144769802 C T UTRN Missense_Mutation p.R657C 0.38 deleterious(0.04) possibly_damaging(0.582) TCGA-EE-A29M-06 6 144843240 144843240 C T UTRN Missense_Mutation p.S1889L 0.42 tolerated(0.36) benign(0.001) TCGA-EE-A29M-06 6 149833342 149833342 A G PPIL4 Silent p.C392C 0.34 TCGA-EE-A29M-06 6 151671651 151671651 G A AKAP12 Missense_Mutation p.G709R 0.36 tolerated(0.16) benign(0.187) TCGA-EE-A29M-06 6 151687318 151687318 G A ZBTB2 Missense_Mutation p.L295F 0.41 tolerated(0.13) benign(0.003) TCGA-EE-A29M-06 6 151907044 151907044 C T CCDC170 Silent p.A371A 0.21 TCGA-EE-A29M-06 6 152420037 152420037 C T ESR1 Missense_Mutation p.S575L 0.31 tolerated(0.21) benign(0.042) TCGA-EE-A29M-06 6 153314014 153314014 G A MTRF1L Silent p.V261V 0.39 TCGA-EE-A29M-06 6 157713929 157713929 C T TMEM242 3'UTR 0.47 TCGA-EE-A29M-06 6 158485992 158485992 G A SYNJ2 Silent p.G498G 0.37 TCGA-EE-A29M-06 6 160240382 160240382 C T PNLDC1 Silent p.L499L 0.45 TCGA-EE-A29M-06 6 161006102 161006102 C T LPA Missense_Mutation p.R1422K 0.33 tolerated(0.84) probably_damaging(0.986) TCGA-EE-A29M-06 6 161518130 161518130 C T MAP3K4 Missense_Mutation p.P1149L 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A29M-06 6 161807861 161807861 T C PARK2 Missense_Mutation p.S378G 0.39 tolerated(0.38) benign(0.003) TCGA-EE-A29M-06 6 163836228 163836228 G A QKI Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0.02) benign(0.014) TCGA-EE-A29M-06 6 165957015 165957015 G A PDE10A Missense_Mutation p.P37S 0.39 deleterious(0.01) benign(0.396) TCGA-EE-A29M-06 6 168479794 168479794 C A FRMD1 5'UTR 0.33 TCGA-EE-A29M-06 6 170002355 170002355 G A WDR27 Missense_Mutation p.P795L 0.33 deleterious(0) probably_damaging(0.971) TCGA-EE-A29M-06 6 24291289 24291289 C T DCDC2 Missense_Mutation p.G192E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 6 25726745 25726745 C T HIST1H2AA Missense_Mutation p.R4Q 0.29 deleterious_low_confidence(0.02) benign(0.006) TCGA-EE-A29M-06 6 25799001 25799001 C T SLC17A1 Intron 0.27 TCGA-EE-A29M-06 6 26377349 26377349 C T BTN3A2 3'UTR 0.22 TCGA-EE-A29M-06 6 26468536 26468536 G A BTN2A1 Missense_Mutation p.C448Y 0.36 tolerated(0.35) benign(0.016) TCGA-EE-A29M-06 6 27834936 27834936 C T HIST1H1B Silent p.K124K 0.26 TCGA-EE-A29M-06 6 28251876 28251876 C T PGBD1 Silent p.L96L 0.28 TCGA-EE-A29M-06 6 28540518 28540518 G A SCAND3 Missense_Mutation p.H1050Y 0.21 tolerated(0.2) benign(0.001) TCGA-EE-A29M-06 6 28541528 28541528 C T SCAND3 Missense_Mutation p.R713K 0.32 deleterious_low_confidence(0.04) probably_damaging(0.931) TCGA-EE-A29M-06 6 28542523 28542523 C T SCAND3 Missense_Mutation p.M653I 0.35 tolerated_low_confidence(0.24) benign(0.002) TCGA-EE-A29M-06 6 28542960 28542960 G A SCAND3 Nonsense_Mutation p.Q508* 0.29 TCGA-EE-A29M-06 6 29054567 29054567 G A OR2B3 Silent p.F153F 0.30 TCGA-EE-A29M-06 6 29323920 29323920 G A OR5V1 Missense_Mutation p.S18F 0.29 deleterious(0.01) benign(0.316) TCGA-EE-A29M-06 6 29342600 29342600 C A OR12D3 Silent p.L155L 0.22 TCGA-EE-A29M-06 6 29342884 29342884 G A OR12D3 Silent p.L61L 0.37 TCGA-EE-A29M-06 6 29624890 29624890 C T MOG 5'Flank 0.29 TCGA-EE-A29M-06 6 29976931 29976931 G A ZNRD1-AS1 RNA 0.32 TCGA-EE-A29M-06 6 30308352 30308352 C T TRIM39 Missense_Mutation p.P322S 0.26 deleterious(0.01) benign(0.035) TCGA-EE-A29M-06 6 30573710 30573710 G A PPP1R10 Silent p.I281I 0.28 TCGA-EE-A29M-06 6 30676091 30676091 G A MDC1 Silent p.F755F 0.24 TCGA-EE-A29M-06 6 30862382 30862382 C T DDR1 Missense_Mutation p.P483S 0.21 tolerated(0.88) benign(0.062) TCGA-EE-A29M-06 6 30862383 30862383 C T DDR1 Missense_Mutation p.P483L 0.20 tolerated(0.32) benign(0.013) TCGA-EE-A29M-06 6 31084228 31084228 C T CDSN Silent p.K388K 0.25 TCGA-EE-A29M-06 6 31322439 31322439 C G HLA-B Missense_Mutation p.G339A 0.24 tolerated_low_confidence(0.13) probably_damaging(0.999) TCGA-EE-A29M-06 6 31557699 31557699 G A NCR3 Missense_Mutation p.S83F 0.26 tolerated(0.1) benign(0.058) TCGA-EE-A29M-06 6 31779105 31779105 A T HSPA1L Missense_Mutation p.D215E 0.33 tolerated_low_confidence(1) probably_damaging(0.96) TCGA-EE-A29M-06 6 31911708 31911708 C T CFB Missense_Mutation p.P430L 0.25 deleterious(0) probably_damaging(0.963) TCGA-EE-A29M-06 6 31919130 31919130 G A CFB Missense_Mutation p.E1159K 0.28 tolerated(0.27) possibly_damaging(0.826) TCGA-EE-A29M-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.28 TCGA-EE-A29M-06 6 31997489 31997489 C T C4B Missense_Mutation p.H1275Y 0.12 tolerated(0.12) benign(0.148) TCGA-EE-A29M-06 6 32010301 32010301 G A TNXB Silent p.F476F 0.23 TCGA-EE-A29M-06 6 32030250 32030250 C T TNXB Silent p.K2284K 0.24 TCGA-EE-A29M-06 6 32035464 32035464 C T TNXB Missense_Mutation p.G2173D 0.22 possibly_damaging(0.892) TCGA-EE-A29M-06 6 32035616 32035616 G A TNXB Silent p.F2122F 0.25 TCGA-EE-A29M-06 6 32039805 32039805 C T TNXB Missense_Mutation p.G1651E 0.29 probably_damaging(0.999) TCGA-EE-A29M-06 6 32052275 32052275 C T TNXB Silent p.L1120L 0.28 TCGA-EE-A29M-06 6 32053761 32053761 C T TNXB Missense_Mutation p.D972N 0.30 probably_damaging(0.994) TCGA-EE-A29M-06 6 32372842 32372842 C T BTNL2 Missense_Mutation p.G101S 0.26 tolerated(0.55) benign(0.091) TCGA-EE-A29M-06 6 32726755 32726755 G A HLA-DQB2 Missense_Mutation p.S173F 0.32 deleterious(0) possibly_damaging(0.601) TCGA-EE-A29M-06 6 32815348 32815348 A T TAP1 Silent p.A675A 0.27 TCGA-EE-A29M-06 6 33173925 33173925 C T HSD17B8 Silent p.I222I 0.23 TCGA-EE-A29M-06 6 33231635 33231635 G A VPS52 Missense_Mutation p.L548F 0.27 tolerated(0.07) possibly_damaging(0.599) TCGA-EE-A29M-06 6 33231636 33231636 G A VPS52 Silent p.V547V 0.27 TCGA-EE-A29M-06 6 33281858 33281858 C T TAPBP 5'UTR 0.36 TCGA-EE-A29M-06 6 33281859 33281859 C T TAPBP 5'UTR 0.37 TCGA-EE-A29M-06 6 33383033 33383033 C T PHF1 Missense_Mutation p.P421S 0.31 tolerated(0.61) benign(0) TCGA-EE-A29M-06 6 33694681 33694681 G A IP6K3 Missense_Mutation p.P139L 0.29 tolerated(0.2) benign(0.107) TCGA-EE-A29M-06 6 34101284 34101284 C T GRM4 5'UTR 0.27 TCGA-EE-A29M-06 6 34738119 34738119 C T SNRPC Missense_Mutation p.P101L 0.26 tolerated(0.09) unknown(0) TCGA-EE-A29M-06 6 34738120 34738120 C T SNRPC Silent p.P101P 0.27 TCGA-EE-A29M-06 6 34738142 34738142 C T SNRPC Missense_Mutation p.P109S 0.33 deleterious(0.03) unknown(0) TCGA-EE-A29M-06 6 35755835 35755835 C T CLPSL1 3'UTR 0.11 TCGA-EE-A29M-06 6 35856695 35856695 A G SRPK1 Missense_Mutation p.Y67H 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 6 35945086 35945086 C T SLC26A8 Silent p.K356K 0.23 TCGA-EE-A29M-06 6 36179135 36179135 C T BRPF3 Silent p.S760S 0.22 TCGA-EE-A29M-06 6 36298396 36298396 G A C6orf222 Silent p.A24A 0.26 TCGA-EE-A29M-06 6 36483160 36483160 G A STK38 Silent p.F208F 0.33 TCGA-EE-A29M-06 6 36990057 36990057 C T FGD2 Missense_Mutation p.R457W 0.21 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 6 37252230 37252230 C T TBC1D22B Missense_Mutation p.T264I 0.36 deleterious(0.04) probably_damaging(0.963) TCGA-EE-A29M-06 6 37606422 37606422 C G MDGA1 Missense_Mutation p.R853P 0.20 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29M-06 6 38691148 38691148 G A DNAH8 5'UTR 0.30 TCGA-EE-A29M-06 6 38704843 38704843 G A DNAH8 Missense_Mutation p.E38K 0.23 benign(0.362) TCGA-EE-A29M-06 6 38834547 38834547 C T DNAH8 Silent p.I1979I 0.23 TCGA-EE-A29M-06 6 38862615 38862615 G A DNAH8 Missense_Mutation p.E2691K 0.30 probably_damaging(1) TCGA-EE-A29M-06 6 38941544 38941544 G A DNAH8 Nonsense_Mutation p.W3994* 0.19 TCGA-EE-A29M-06 6 38980315 38980315 G A DNAH8 Nonsense_Mutation p.W4322* 0.34 TCGA-EE-A29M-06 6 39158965 39158965 C T KCNK5 Missense_Mutation p.E401K 0.26 tolerated(0.05) benign(0.104) TCGA-EE-A29M-06 6 39159100 39159100 C T KCNK5 Missense_Mutation p.E356K 0.24 tolerated(0.05) possibly_damaging(0.524) TCGA-EE-A29M-06 6 39159357 39159357 G A KCNK5 Missense_Mutation p.S270F 0.29 tolerated(0.44) benign(0.163) TCGA-EE-A29M-06 6 40400046 40400046 C T LRFN2 Silent p.G269G 0.31 TCGA-EE-A29M-06 6 40400412 40400412 G A LRFN2 Silent p.F147F 0.23 TCGA-EE-A29M-06 6 41204270 41204270 C T TREML4 Silent p.L185L 0.34 TCGA-EE-A29M-06 6 41774066 41774066 G A USP49 Missense_Mutation p.A219V 0.27 tolerated(0.18) benign(0.001) TCGA-EE-A29M-06 6 42141371 42141371 G A GUCA1A Missense_Mutation p.G7E 0.20 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29M-06 6 42819858 42819858 C T GLTSCR1L Missense_Mutation p.S623F 0.17 deleterious(0) benign(0.391) TCGA-EE-A29M-06 6 43251412 43251412 C T TTBK1 Silent p.P978P 0.27 TCGA-EE-A29M-06 6 44149024 44149024 C T CAPN11 Silent p.F635F 0.23 TCGA-EE-A29M-06 6 44254128 44254128 G A TCTE1 Missense_Mutation p.P140L 0.26 tolerated(0.1) benign(0.065) TCGA-EE-A29M-06 6 45870832 45870832 C T CLIC5 Missense_Mutation p.R409Q 0.24 tolerated(0.05) benign(0.077) TCGA-EE-A29M-06 6 47650193 47650193 C T GPR111 Missense_Mutation p.A633V 0.24 deleterious(0.01) benign(0.124) TCGA-EE-A29M-06 6 47680209 47680209 C T GPR115 Silent p.C139C 0.22 TCGA-EE-A29M-06 6 49604371 49604371 G A RHAG Missense_Mutation p.P52L 0.28 deleterious(0.01) benign(0.116) TCGA-EE-A29M-06 6 49666122 49666122 C T CRISP2 Missense_Mutation p.G124S 0.27 deleterious(0) possibly_damaging(0.857) TCGA-EE-A29M-06 6 50016362 50016362 C T DEFB112 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29M-06 6 51907899 51907899 C T PKHD1 Missense_Mutation p.G952E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 6 52698975 52698975 C T GSTA5 Silent p.E126E 0.23 TCGA-EE-A29M-06 6 52957291 52957291 C T FBXO9 Missense_Mutation p.P250S 0.27 tolerated(0.05) benign(0.158) TCGA-EE-A29M-06 6 52996869 52996869 C T GCM1 Missense_Mutation p.R126Q 0.24 deleterious(0.05) benign(0.296) TCGA-EE-A29M-06 6 55924020 55924020 C T COL21A1 Missense_Mutation p.E877K 0.27 tolerated(0.87) benign(0.012) TCGA-EE-A29M-06 6 56044665 56044665 C T COL21A1 Silent p.G117G 0.21 TCGA-EE-A29M-06 6 69666069 69666069 C T BAI3 Missense_Mutation p.P450L 0.43 tolerated(0.3) possibly_damaging(0.447) TCGA-EE-A29M-06 6 73108660 73108660 C T RIMS1 Missense_Mutation p.P1575L 0.38 deleterious(0) benign(0.306) TCGA-EE-A29M-06 6 73834320 73834320 C T KCNQ5 Intron 0.44 TCGA-EE-A29M-06 6 7572293 7572293 G A DSP Missense_Mutation p.E708K 0.26 possibly_damaging(0.54) TCGA-EE-A29M-06 6 7581158 7581158 C T DSP Missense_Mutation p.R1579W 0.27 benign(0) TCGA-EE-A29M-06 6 7585285 7585285 C T DSP Missense_Mutation p.S2597F 0.23 benign(0.1) TCGA-EE-A29M-06 6 76022427 76022427 G A FILIP1 Missense_Mutation p.P1041S 0.40 deleterious(0.03) possibly_damaging(0.788) TCGA-EE-A29M-06 6 76022428 76022428 G A FILIP1 Silent p.T1040T 0.40 TCGA-EE-A29M-06 6 78172713 78172713 G A HTR1B Silent p.S136S 0.36 TCGA-EE-A29M-06 6 79577333 79577333 G A IRAK1BP1 Missense_Mutation p.E14K 0.34 tolerated(0.06) benign(0.285) TCGA-EE-A29M-06 6 84799011 84799011 A G MRAP2 Silent p.Q143Q 0.33 TCGA-EE-A29M-06 6 93964437 93964437 C T EPHA7 Nonsense_Mutation p.W820* 0.46 TCGA-EE-A29M-06 6 97562220 97562220 G A KLHL32 Missense_Mutation p.E397K 0.43 tolerated(1) benign(0.077) TCGA-EE-A29M-06 7 100075452 100075452 G A TSC22D4 Silent p.S70S 0.21 TCGA-EE-A29M-06 7 100075471 100075471 G A TSC22D4 Missense_Mutation p.P64L 0.32 deleterious(0) benign(0.146) TCGA-EE-A29M-06 7 100086497 100086497 C T NYAP1 Missense_Mutation p.P385S 0.29 tolerated(0.63) benign(0.058) TCGA-EE-A29M-06 7 100086498 100086498 C T NYAP1 Missense_Mutation p.P385L 0.29 tolerated(0.28) benign(0) TCGA-EE-A29M-06 7 100175447 100175447 G A LRCH4 Missense_Mutation p.S346L 0.29 tolerated(0.27) benign(0.003) TCGA-EE-A29M-06 7 100192111 100192111 A G FBXO24 Missense_Mutation p.H338R 0.25 deleterious(0.01) benign(0.227) TCGA-EE-A29M-06 7 100212785 100212785 C T MOSPD3 Silent p.T229T 0.22 TCGA-EE-A29M-06 7 100229531 100229531 A T TFR2 Missense_Mutation p.F335Y 0.27 deleterious(0) probably_damaging(0.981) TCGA-EE-A29M-06 7 100552243 100552243 C T MUC3A Missense_Mutation p.P332S 0.12 tolerated(0.33) possibly_damaging(0.463) TCGA-EE-A29M-06 7 100610057 100610057 G A MUC3A Missense_Mutation p.D848N 0.17 tolerated(0.19) benign(0.107) TCGA-EE-A29M-06 7 100679583 100679583 G A MUC17 Missense_Mutation p.G1629E 0.27 unknown(0) TCGA-EE-A29M-06 7 100679927 100679927 C T MUC17 Missense_Mutation p.P1744S 0.25 possibly_damaging(0.884) TCGA-EE-A29M-06 7 100684180 100684180 A G MUC17 Silent p.E3161E 0.30 TCGA-EE-A29M-06 7 100685120 100685120 G A MUC17 Missense_Mutation p.A3475T 0.32 benign(0.007) TCGA-EE-A29M-06 7 100691290 100691290 G A MUC17 Silent p.T4143T 0.27 TCGA-EE-A29M-06 7 102113410 102113410 G A LRWD1 Missense_Mutation p.V620M 0.26 deleterious(0) possibly_damaging(0.779) TCGA-EE-A29M-06 7 112461985 112461985 G A C7orf60 Silent p.F344F 0.35 TCGA-EE-A29M-06 7 117232711 117232711 G A CFTR Silent p.K830K 0.25 TCGA-EE-A29M-06 7 121652518 121652518 C T PTPRZ1 Missense_Mutation p.L1140F 0.27 deleterious_low_confidence(0.02) benign(0.013) TCGA-EE-A29M-06 7 123277008 123277008 C T ASB15 Silent p.L580L 0.25 TCGA-EE-A29M-06 7 123508613 123508613 G A HYAL4 Missense_Mutation p.G96R 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29M-06 7 128483328 128483328 G A FLNC Missense_Mutation p.D866N 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A29M-06 7 128491636 128491636 C T FLNC Silent p.F1932F 0.27 TCGA-EE-A29M-06 7 130007340 130007340 C T CPA5 Silent p.I322I 0.25 TCGA-EE-A29M-06 7 130138042 130138042 G A MEST Silent p.L134L 0.26 TCGA-EE-A29M-06 7 131848931 131848931 G A PLXNA4 Silent p.L1490L 0.22 TCGA-EE-A29M-06 7 131912304 131912304 C T PLXNA4 Silent p.E596E 0.28 TCGA-EE-A29M-06 7 132169627 132169627 C T PLXNA4 Intron 0.34 TCGA-EE-A29M-06 7 132937894 132937894 A C EXOC4 Missense_Mutation p.T13P 0.24 tolerated(0.26) benign(0.002) TCGA-EE-A29M-06 7 133160140 133160140 C T EXOC4 Missense_Mutation p.A414V 0.24 tolerated(0.06) benign(0.013) TCGA-EE-A29M-06 7 136700491 136700491 C T CHRM2 Silent p.A293A 0.21 TCGA-EE-A29M-06 7 137150693 137150693 G A DGKI Missense_Mutation p.P866L 0.31 tolerated(0.09) benign(0.155) TCGA-EE-A29M-06 7 138312185 138312185 C T SVOPL Missense_Mutation p.G364D 0.17 tolerated(0.12) possibly_damaging(0.616) TCGA-EE-A29M-06 7 138874089 138874089 C T TTC26 Missense_Mutation p.H526Y 0.34 deleterious(0.04) benign(0.105) TCGA-EE-A29M-06 7 139257822 139257822 G A HIPK2 Missense_Mutation p.P1150S 0.24 tolerated(0.07) benign(0.08) TCGA-EE-A29M-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-EE-A29M-06 7 141464316 141464316 C T TAS2R3 Missense_Mutation p.L120F 0.29 deleterious(0.02) possibly_damaging(0.585) TCGA-EE-A29M-06 7 141464375 141464375 C T TAS2R3 Silent p.L139L 0.30 TCGA-EE-A29M-06 7 141629994 141629994 G A CLEC5A Silent p.F159F 0.28 TCGA-EE-A29M-06 7 141673292 141673292 G A TAS2R38 Silent p.F66F 0.25 TCGA-EE-A29M-06 7 141734488 141734488 C T MGAM Silent p.F602F 0.33 TCGA-EE-A29M-06 7 141740634 141740634 C T MGAM Missense_Mutation p.T829I 0.30 deleterious(0.01) benign(0.173) TCGA-EE-A29M-06 7 141951999 141951999 G A PRSS58 3'UTR 0.29 TCGA-EE-A29M-06 7 142008385 142008385 G A TRBV3-1 5'UTR 0.38 TCGA-EE-A29M-06 7 142013256 142013256 G A TRBV4-1 Silent p.K37K 0.26 TCGA-EE-A29M-06 7 142013462 142013462 C T TRBV4-1 Missense_Mutation p.A106V 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 7 142032411 142032411 G T TRBV7-1 Silent p.S77S 0.33 TCGA-EE-A29M-06 7 142111506 142111506 C T TRBV5-7 Missense_Mutation p.G77E 0.35 deleterious(0.04) probably_damaging(0.926) TCGA-EE-A29M-06 7 142120004 142120004 G A TRBV7-7 Nonsense_Mutation p.Q55* 0.24 TCGA-EE-A29M-06 7 142481280 142481280 C T PRSS3P2 RNA 0.29 TCGA-EE-A29M-06 7 142498826 142498826 G A TRBC2 Missense_Mutation p.G35S 0.16 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29M-06 7 142562484 142562484 G A EPHB6 Missense_Mutation p.R309Q 0.34 tolerated(0.11) benign(0.093) TCGA-EE-A29M-06 7 142609744 142609744 G A TRPV5 Silent p.I564I 0.28 TCGA-EE-A29M-06 7 142609750 142609750 G A TRPV5 Silent p.F562F 0.31 TCGA-EE-A29M-06 7 142630544 142630544 G A TRPV5 Silent p.L5L 0.30 TCGA-EE-A29M-06 7 142636642 142636642 G A C7orf34 5'UTR 0.38 TCGA-EE-A29M-06 7 142836772 142836772 C T PIP 3'UTR 0.29 TCGA-EE-A29M-06 7 143028384 143028384 G A CLCN1 Missense_Mutation p.E347K 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 7 143140715 143140715 A G TAS2R60 Missense_Mutation p.K57R 0.28 tolerated(0.51) probably_damaging(0.979) TCGA-EE-A29M-06 7 143270030 143270030 G C CTAGE15 Missense_Mutation p.E374Q 0.23 tolerated(0.07) possibly_damaging(0.452) TCGA-EE-A29M-06 7 143270342 143270342 G A CTAGE15 Missense_Mutation p.D478N 0.19 tolerated(0.09) benign(0.315) TCGA-EE-A29M-06 7 143633246 143633246 A T OR2F2 Missense_Mutation p.K307N 0.34 tolerated(0.05) benign(0.019) TCGA-EE-A29M-06 7 143657050 143657050 C T OR2F1 5'UTR 0.32 TCGA-EE-A29M-06 7 143657596 143657596 C T OR2F1 Missense_Mutation p.S178F 0.22 tolerated(1) benign(0.049) TCGA-EE-A29M-06 7 143771752 143771752 C T OR2A25 Missense_Mutation p.S147F 0.29 deleterious(0.02) benign(0.072) TCGA-EE-A29M-06 7 143792847 143792847 C T OR2A12 Missense_Mutation p.S216F 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 7 144075882 144075882 C T ARHGEF5 Missense_Mutation p.A1520V 0.27 deleterious(0) probably_damaging(0.983) TCGA-EE-A29M-06 7 14775762 14775762 G A DGKB Missense_Mutation p.P76S 0.13 tolerated(0.09) benign(0.285) TCGA-EE-A29M-06 7 148112591 148112591 C T CNTNAP2 Silent p.Y1293Y 0.27 TCGA-EE-A29M-06 7 148427144 148427144 C T CUL1 5'UTR 0.30 TCGA-EE-A29M-06 7 148768478 148768478 G A ZNF786 Silent p.F462F 0.20 TCGA-EE-A29M-06 7 148802413 148802413 G A ZNF425 Missense_Mutation p.P184S 0.26 tolerated(0.62) benign(0.02) TCGA-EE-A29M-06 7 148895756 148895756 G A ZNF282 Missense_Mutation p.R166K 0.27 tolerated(0.06) probably_damaging(0.949) TCGA-EE-A29M-06 7 148951428 148951428 C T ZNF212 Silent p.L470L 0.27 TCGA-EE-A29M-06 7 149481963 149481963 C A SSPO RNA 0.22 TCGA-EE-A29M-06 7 149483265 149483265 C T SSPO RNA 0.32 TCGA-EE-A29M-06 7 149490419 149490419 G A SSPO RNA 0.30 TCGA-EE-A29M-06 7 149500367 149500367 G A SSPO RNA 0.15 TCGA-EE-A29M-06 7 149506159 149506159 C T SSPO RNA 0.30 TCGA-EE-A29M-06 7 149516415 149516415 C T SSPO RNA 0.22 TCGA-EE-A29M-06 7 149521696 149521696 C T SSPO RNA 0.36 TCGA-EE-A29M-06 7 150037191 150037191 C T RARRES2 Missense_Mutation p.G93R 0.27 tolerated(0.29) possibly_damaging(0.775) TCGA-EE-A29M-06 7 150324823 150324823 C T GIMAP6 Missense_Mutation p.G288E 0.23 tolerated(0.54) benign(0.008) TCGA-EE-A29M-06 7 150502072 150502072 C T TMEM176A 3'UTR 0.29 TCGA-EE-A29M-06 7 150721147 150721147 G A ATG9B Silent p.L122L 0.26 TCGA-EE-A29M-06 7 150776851 150776851 G A FASTK Missense_Mutation p.P81S 0.22 tolerated_low_confidence(0.13) benign(0.006) TCGA-EE-A29M-06 7 1511998 1511998 G A INTS1 Missense_Mutation p.P2032L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29M-06 7 151874091 151874091 G A KMT2C Missense_Mutation p.S2816F 0.30 possibly_damaging(0.713) TCGA-EE-A29M-06 7 1535814 1535814 G A INTS1 Silent p.A563A 0.30 TCGA-EE-A29M-06 7 1535815 1535815 G A INTS1 Missense_Mutation p.A563V 0.29 deleterious(0.03) benign(0.019) TCGA-EE-A29M-06 7 156437203 156437203 C T RNF32 Missense_Mutation p.S9F 0.20 deleterious(0.01) possibly_damaging(0.757) TCGA-EE-A29M-06 7 15666406 15666406 C T MEOX2 Missense_Mutation p.E219K 0.13 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A29M-06 7 20685683 20685683 C T ABCB5 Silent p.T301T 0.14 TCGA-EE-A29M-06 7 20738039 20738039 C T ABCB5 Missense_Mutation p.P674S 0.28 deleterious(0.04) possibly_damaging(0.89) TCGA-EE-A29M-06 7 20744422 20744422 A T ABCB5 Missense_Mutation p.I805F 0.12 deleterious(0.02) benign(0.152) TCGA-EE-A29M-06 7 21778471 21778471 G A DNAH11 Missense_Mutation p.D2607N 0.54 probably_damaging(1) TCGA-EE-A29M-06 7 21826324 21826324 C T DNAH11 Missense_Mutation p.A3234V 0.13 probably_damaging(0.967) TCGA-EE-A29M-06 7 21840765 21840765 G A DNAH11 Missense_Mutation p.R3353Q 0.48 benign(0.005) TCGA-EE-A29M-06 7 23349140 23349140 C T MALSU1 Missense_Mutation p.P228L 0.11 deleterious_low_confidence(0.04) benign(0.091) TCGA-EE-A29M-06 7 23768836 23768836 C T STK31 Missense_Mutation p.P151S 0.38 tolerated(0.18) benign(0.342) TCGA-EE-A29M-06 7 2409115 2409115 C T EIF3B Missense_Mutation p.S471F 0.31 tolerated(0.07) benign(0.012) TCGA-EE-A29M-06 7 2579448 2579448 G A BRAT1 Silent p.L490L 0.09 TCGA-EE-A29M-06 7 27149927 27149927 G A HOXA3 Silent p.P111P 0.12 TCGA-EE-A29M-06 7 27204900 27204900 C T HOXA9 Silent p.K59K 0.50 TCGA-EE-A29M-06 7 30692940 30692940 C G CRHR2 3'UTR 0.15 TCGA-EE-A29M-06 7 31117622 31117622 G A ADCYAP1R1 Nonsense_Mutation p.W58* 0.16 TCGA-EE-A29M-06 7 31864525 31864525 G A PDE1C Silent p.I514I 0.14 TCGA-EE-A29M-06 7 34851439 34851439 C T NPSR1 Missense_Mutation p.H148Y 0.28 tolerated(0.09) possibly_damaging(0.858) TCGA-EE-A29M-06 7 37890311 37890311 G A NME8 Missense_Mutation p.E58K 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 7 38500937 38500937 G A AMPH Silent p.I321I 0.18 TCGA-EE-A29M-06 7 41729931 41729931 C T INHBA Missense_Mutation p.E200K 0.18 tolerated(0.54) benign(0.314) TCGA-EE-A29M-06 7 43484616 43484616 G A HECW1 Silent p.E615E 0.22 TCGA-EE-A29M-06 7 44282236 44282236 G A CAMK2B Silent p.L207L 0.35 TCGA-EE-A29M-06 7 44736150 44736150 C T OGDH Missense_Mutation p.H632Y 0.11 deleterious(0) possibly_damaging(0.908) TCGA-EE-A29M-06 7 45005696 45005696 G A MYO1G Silent p.P711P 0.19 TCGA-EE-A29M-06 7 45725734 45725734 C T ADCY1 Silent p.S749S 0.33 TCGA-EE-A29M-06 7 45726174 45726174 G A ADCY1 Missense_Mutation p.E786K 0.12 tolerated(0.57) possibly_damaging(0.777) TCGA-EE-A29M-06 7 45753460 45753460 C T ADCY1 Missense_Mutation p.P1076S 0.10 tolerated_low_confidence(0.34) benign(0.003) TCGA-EE-A29M-06 7 47906088 47906088 A C PKD1L1 Missense_Mutation p.S1341A 0.40 tolerated(0.14) benign(0.177) TCGA-EE-A29M-06 7 48318429 48318429 C T ABCA13 Silent p.S2546S 0.14 TCGA-EE-A29M-06 7 48443435 48443435 C T ABCA13 Missense_Mutation p.S4010F 0.33 probably_damaging(0.994) TCGA-EE-A29M-06 7 48451959 48451959 C T ABCA13 Silent p.L4080L 0.12 TCGA-EE-A29M-06 7 4876171 4876171 C T RADIL Missense_Mutation p.G201R 0.15 deleterious(0.05) benign(0.1) TCGA-EE-A29M-06 7 51097060 51097060 G A COBL Missense_Mutation p.S578F 0.21 tolerated(0.7) benign(0.074) TCGA-EE-A29M-06 7 54617587 54617587 A C VSTM2A Missense_Mutation p.K120Q 0.26 tolerated(0.53) probably_damaging(0.95) TCGA-EE-A29M-06 7 55248899 55248899 C T EGFR Intron 0.29 TCGA-EE-A29M-06 7 55872951 55872951 C T SEPT14 Silent p.E373E 0.08 TCGA-EE-A29M-06 7 57187523 57187523 G A ZNF479 3'UTR 0.19 TCGA-EE-A29M-06 7 63726757 63726757 T A ZNF679 Missense_Mutation p.F249Y 0.13 deleterious(0.04) possibly_damaging(0.67) TCGA-EE-A29M-06 7 65444845 65444845 C T GUSB Silent p.E150E 0.51 TCGA-EE-A29M-06 7 72081675 72081675 G A TYW1B Silent p.L215L 0.13 TCGA-EE-A29M-06 7 72657286 72657286 G A GTF2IRD2P1 RNA 0.17 TCGA-EE-A29M-06 7 72657705 72657705 C T GTF2IRD2P1 RNA 0.34 TCGA-EE-A29M-06 7 73184241 73184241 C T CLDN3 Missense_Mutation p.E47K 0.29 deleterious(0.04) probably_damaging(0.948) TCGA-EE-A29M-06 7 73459572 73459572 G A ELN Missense_Mutation p.G164R 0.14 unknown(0) TCGA-EE-A29M-06 7 73768317 73768317 G A CLIP2 Silent p.G262G 0.30 TCGA-EE-A29M-06 7 73790984 73790984 C T CLIP2 Silent p.F751F 0.32 TCGA-EE-A29M-06 7 74159269 74159269 C T GTF2I Silent p.F641F 0.10 TCGA-EE-A29M-06 7 74564989 74564989 C T GTF2IRD2B Silent p.F912F 0.12 TCGA-EE-A29M-06 7 7495682 7495682 C T COL28A1 Missense_Mutation p.G455E 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 7 75441266 75441266 C T CCL24 Missense_Mutation p.G70S 0.23 deleterious(0.03) possibly_damaging(0.749) TCGA-EE-A29M-06 7 77583174 77583174 C T PHTF2 Missense_Mutation p.S733F 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A29M-06 7 77998513 77998513 C T MAGI2 Missense_Mutation p.E355K 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 7 81331939 81331939 C T HGF Nonsense_Mutation p.W715* 0.26 TCGA-EE-A29M-06 7 81381451 81381451 G A HGF Missense_Mutation p.P204S 0.22 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A29M-06 7 81381563 81381563 G A HGF Silent p.S166S 0.24 TCGA-EE-A29M-06 7 82538228 82538228 C G PCLO Missense_Mutation p.V4468L 0.29 unknown(0) TCGA-EE-A29M-06 7 82544594 82544594 G A PCLO Silent p.L4236L 0.32 TCGA-EE-A29M-06 7 82545065 82545065 G A PCLO Silent p.L4079L 0.26 TCGA-EE-A29M-06 7 82583736 82583736 G A PCLO Missense_Mutation p.P2178L 0.30 unknown(0) TCGA-EE-A29M-06 7 87060831 87060831 G A ABCB4 Silent p.V594V 0.25 TCGA-EE-A29M-06 7 87179492 87179492 C T ABCB1 Missense_Mutation p.G449R 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 7 87811273 87811273 G A ADAM22 Missense_Mutation p.G837D 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29M-06 7 88963128 88963128 G A ZNF804B Missense_Mutation p.E278K 0.20 tolerated(0.21) benign(0.037) TCGA-EE-A29M-06 7 88964106 88964106 G A ZNF804B Missense_Mutation p.E604K 0.25 tolerated(0.17) benign(0.025) TCGA-EE-A29M-06 7 91660864 91660864 C T AKAP9 Silent p.I1428I 0.28 TCGA-EE-A29M-06 7 92136429 92136429 G A PEX1 Missense_Mutation p.S561F 0.29 deleterious(0.02) benign(0.142) TCGA-EE-A29M-06 7 92158092 92158092 G A RBM48 5'UTR 0.29 TCGA-EE-A29M-06 7 92731217 92731217 G A SAMD9 Silent p.I1398I 0.28 TCGA-EE-A29M-06 7 92731247 92731247 G A SAMD9 Silent p.F1388F 0.26 TCGA-EE-A29M-06 7 94167028 94167028 C T CASD1 Missense_Mutation p.S363L 0.24 tolerated(0.21) benign(0.062) TCGA-EE-A29M-06 7 94940786 94940786 G A PON1 Silent p.T158T 0.27 TCGA-EE-A29M-06 7 95822397 95822397 G A SLC25A13 Silent p.T189T 0.23 TCGA-EE-A29M-06 7 959629 959629 C T ADAP1 Missense_Mutation p.E122K 0.17 tolerated(0.2) benign(0.009) TCGA-EE-A29M-06 7 98551016 98551016 T - TRRAP Frame_Shift_Del p.I1891Sfs*37 0.25 TCGA-EE-A29M-06 7 99117470 99117470 C T ZKSCAN5 Missense_Mutation p.P192S 0.25 tolerated(0.11) benign(0.03) TCGA-EE-A29M-06 7 99377689 99377689 C T CYP3A4 Missense_Mutation p.G31R 0.23 tolerated(0.33) possibly_damaging(0.837) TCGA-EE-A29M-06 7 99434114 99434114 G A CYP3A43 Missense_Mutation p.G37E 0.42 deleterious(0) possibly_damaging(0.685) TCGA-EE-A29M-06 8 100128049 100128049 G A VPS13B Missense_Mutation p.G295D 0.12 tolerated(0.07) probably_damaging(0.931) TCGA-EE-A29M-06 8 100479699 100479699 G A VPS13B Missense_Mutation p.G1168E 0.27 tolerated(0.21) probably_damaging(0.997) TCGA-EE-A29M-06 8 100975140 100975140 C T RGS22 Missense_Mutation p.E1228K 0.29 deleterious(0.01) possibly_damaging(0.62) TCGA-EE-A29M-06 8 101203629 101203629 C T SPAG1 Missense_Mutation p.R282C 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29M-06 8 10466107 10466107 C T RP1L1 Missense_Mutation p.G1834D 0.30 unknown(0) TCGA-EE-A29M-06 8 10468130 10468130 C T RP1L1 Missense_Mutation p.G1160R 0.22 probably_damaging(0.991) TCGA-EE-A29M-06 8 104709396 104709396 G A RIMS2 Missense_Mutation p.G87S 0.17 tolerated_low_confidence(0.34) benign(0.007) TCGA-EE-A29M-06 8 105509941 105509941 G A LRP12 Missense_Mutation p.P280L 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A29M-06 8 10555278 10555278 G A C8orf74 Silent p.L137L 0.20 TCGA-EE-A29M-06 8 10583914 10583914 G A SOX7 Silent p.P219P 0.24 TCGA-EE-A29M-06 8 10755610 10755610 C T XKR6 Missense_Mutation p.R593Q 0.31 tolerated(0.06) possibly_damaging(0.89) TCGA-EE-A29M-06 8 108264161 108264161 C T ANGPT1 Silent p.G473G 0.30 TCGA-EE-A29M-06 8 108334242 108334242 G A ANGPT1 Silent p.I230I 0.21 TCGA-EE-A29M-06 8 108970443 108970443 G A RSPO2 Missense_Mutation p.R161C 0.32 deleterious(0) possibly_damaging(0.785) TCGA-EE-A29M-06 8 110099751 110099751 G A TRHR Missense_Mutation p.E4K 0.16 tolerated(0.91) benign(0.001) TCGA-EE-A29M-06 8 110442180 110442180 G A PKHD1L1 Missense_Mutation p.G1048E 0.14 tolerated(0.11) benign(0.037) TCGA-EE-A29M-06 8 110454391 110454391 G A PKHD1L1 Missense_Mutation p.G1454R 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A29M-06 8 110471946 110471946 G A PKHD1L1 Missense_Mutation p.G2376E 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29M-06 8 110499029 110499029 G A PKHD1L1 Missense_Mutation p.E3287K 0.15 tolerated(0.76) benign(0.001) TCGA-EE-A29M-06 8 110505901 110505901 G A PKHD1L1 Silent p.G3416G 0.19 TCGA-EE-A29M-06 8 110509479 110509479 C T PKHD1L1 Missense_Mutation p.S3526F 0.28 deleterious(0) possibly_damaging(0.779) TCGA-EE-A29M-06 8 110984641 110984641 G A KCNV1 Silent p.D279D 0.25 TCGA-EE-A29M-06 8 113871468 113871468 C T CSMD3 Missense_Mutation p.G554E 0.31 tolerated(0.05) possibly_damaging(0.864) TCGA-EE-A29M-06 8 114186060 114186060 G A CSMD3 Silent p.I200I 0.15 TCGA-EE-A29M-06 8 119936706 119936706 G A TNFRSF11B Silent p.F371F 0.21 TCGA-EE-A29M-06 8 11995291 11995291 C T USP17L2 Missense_Mutation p.G327R 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 8 120118157 120118157 G A COLEC10 Silent p.K187K 0.23 TCGA-EE-A29M-06 8 121457505 121457505 G A MRPL13 5'UTR 0.22 TCGA-EE-A29M-06 8 124992918 124992918 C T FER1L6 Missense_Mutation p.S426F 0.23 tolerated(0.06) benign(0.219) TCGA-EE-A29M-06 8 125132115 125132115 G A FER1L6 3'UTR 0.33 TCGA-EE-A29M-06 8 125555409 125555409 C T NDUFB9 Silent p.T61T 0.22 TCGA-EE-A29M-06 8 12598449 12598449 T - LONRF1 Frame_Shift_Del p.L299Ffs*8 0.14 TCGA-EE-A29M-06 8 126075787 126075787 G A KIAA0196 Missense_Mutation p.P462L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 128429045 128429045 C T POU5F1B Missense_Mutation p.P312S 0.20 deleterious(0.04) benign(0.139) TCGA-EE-A29M-06 8 131848648 131848648 G A ADCY8 Silent p.F850F 0.19 TCGA-EE-A29M-06 8 133049730 133049730 G A OC90 Missense_Mutation p.P212S 0.23 tolerated(0.38) possibly_damaging(0.527) TCGA-EE-A29M-06 8 133187826 133187826 G A KCNQ3 Silent p.F269F 0.36 TCGA-EE-A29M-06 8 133764044 133764044 C T TMEM71 Missense_Mutation p.E101K 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 134239698 134239698 G A WISP1 Missense_Mutation p.M283I 0.18 tolerated(0.12) benign(0.003) TCGA-EE-A29M-06 8 139323151 139323151 G A FAM135B Silent p.I30I 0.33 TCGA-EE-A29M-06 8 141572557 141572557 G A AGO2 Silent p.S171S 0.23 TCGA-EE-A29M-06 8 142173457 142173457 G A DENND3 Missense_Mutation p.E380K 0.21 deleterious(0.05) probably_damaging(0.965) TCGA-EE-A29M-06 8 143958442 143958442 C T CYP11B1 Missense_Mutation p.E198K 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A29M-06 8 143960860 143960860 C T CYP11B1 Intron 0.22 TCGA-EE-A29M-06 8 143994729 143994729 G A CYP11B2 Silent p.L365L 0.28 TCGA-EE-A29M-06 8 144941340 144941340 C T EPPK1 Missense_Mutation p.E2028K 0.14 benign(0.192) TCGA-EE-A29M-06 8 145059155 145059155 G A PARP10 Missense_Mutation p.P339S 0.22 tolerated(0.46) benign(0.013) TCGA-EE-A29M-06 8 145095066 145095066 C T SPATC1 Silent p.S156S 0.19 TCGA-EE-A29M-06 8 145095814 145095814 C T SPATC1 Missense_Mutation p.S371F 0.32 deleterious(0) possibly_damaging(0.858) TCGA-EE-A29M-06 8 145659461 145659461 G A TONSL Missense_Mutation p.T1096I 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 8 145667651 145667651 C T TONSL Silent p.E241E 0.25 TCGA-EE-A29M-06 8 145948171 145948171 G A ZNF251 Missense_Mutation p.P292S 0.31 deleterious(0) possibly_damaging(0.787) TCGA-EE-A29M-06 8 145948395 145948395 G A ZNF251 Missense_Mutation p.T217I 0.28 deleterious(0.05) possibly_damaging(0.803) TCGA-EE-A29M-06 8 15967683 15967683 C T MSR1 Missense_Mutation p.E423K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 15978113 15978113 G A MSR1 Missense_Mutation p.P346S 0.38 tolerated(0.37) benign(0.005) TCGA-EE-A29M-06 8 17407823 17407823 G A SLC7A2 Missense_Mutation p.E278K 0.20 tolerated(0.79) benign(0.007) TCGA-EE-A29M-06 8 17419559 17419559 C T SLC7A2 Silent p.F577F 0.12 TCGA-EE-A29M-06 8 17486116 17486116 G A PDGFRL Missense_Mutation p.R209K 0.29 deleterious(0.01) benign(0.297) TCGA-EE-A29M-06 8 1846599 1846599 C A ARHGEF10 Missense_Mutation p.Q520K 0.14 tolerated(0.79) possibly_damaging(0.543) TCGA-EE-A29M-06 8 19266161 19266161 C T CSGALNACT1 Silent p.G424G 0.13 TCGA-EE-A29M-06 8 19816795 19816795 A C LPL Missense_Mutation p.H348P 0.35 deleterious(0) possibly_damaging(0.832) TCGA-EE-A29M-06 8 20028990 20028990 C T SLC18A1 Missense_Mutation p.G247E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 2033485 2033485 C T MYOM2 Missense_Mutation p.P536L 0.21 tolerated(0.08) probably_damaging(0.991) TCGA-EE-A29M-06 8 2037960 2037960 G A MYOM2 Missense_Mutation p.G592S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 2044132 2044132 G A MYOM2 Missense_Mutation p.G724D 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29M-06 8 2046756 2046756 G A MYOM2 Missense_Mutation p.E795K 0.16 tolerated(0.88) benign(0.155) TCGA-EE-A29M-06 8 2088741 2088741 G A MYOM2 Missense_Mutation p.G1299E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 21563530 21563530 G C GFRA2 Missense_Mutation p.A273G 0.27 deleterious(0.02) benign(0.3) TCGA-EE-A29M-06 8 21903803 21903803 G A FGF17 Splice_Site p.X84_splice 0.43 TCGA-EE-A29M-06 8 21977866 21977866 G A HR Missense_Mutation p.S922F 0.18 tolerated(0.05) benign(0.12) TCGA-EE-A29M-06 8 22058683 22058683 C T BMP1 Intron 0.32 TCGA-EE-A29M-06 8 22078859 22078859 G A PHYHIP 3'UTR 0.22 TCGA-EE-A29M-06 8 23058222 23058222 G A TNFRSF10A Silent p.I227I 0.18 TCGA-EE-A29M-06 8 23106782 23106782 C T CHMP7 Missense_Mutation p.S120F 0.31 deleterious(0) benign(0.297) TCGA-EE-A29M-06 8 23106783 23106783 C T CHMP7 Silent p.S120S 0.31 TCGA-EE-A29M-06 8 24199248 24199248 G A ADAM28 Missense_Mutation p.G603E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 24358371 24358371 C T ADAM7 Missense_Mutation p.R691C 0.28 deleterious(0.02) benign(0.051) TCGA-EE-A29M-06 8 26722568 26722568 G A ADRA1A 5'UTR 0.28 TCGA-EE-A29M-06 8 27145626 27145626 G A TRIM35 Missense_Mutation p.P308L 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 8 27903173 27903173 G A NUGGC Silent p.I439I 0.27 TCGA-EE-A29M-06 8 2855633 2855633 G A CSMD1 Silent p.V2759V 0.28 TCGA-EE-A29M-06 8 3047446 3047446 G A CSMD1 Missense_Mutation p.P1796S 0.20 possibly_damaging(0.833) TCGA-EE-A29M-06 8 3224691 3224691 G A CSMD1 Missense_Mutation p.S993F 0.33 benign(0.185) TCGA-EE-A29M-06 8 37791993 37791993 C T GOT1L1 Missense_Mutation p.E362K 0.32 deleterious(0.04) possibly_damaging(0.543) TCGA-EE-A29M-06 8 38369836 38369836 G A C8orf86 3'UTR 0.38 TCGA-EE-A29M-06 8 38705630 38705630 C T TACC1 3'UTR 0.33 TCGA-EE-A29M-06 8 39806702 39806702 G A IDO2 Silent p.P19P 0.45 TCGA-EE-A29M-06 8 39840215 39840215 G A IDO2 Silent p.R133R 0.29 TCGA-EE-A29M-06 8 41790352 41790352 G A KAT6A Missense_Mutation p.P1796S 0.21 unknown(0) TCGA-EE-A29M-06 8 42587468 42587468 C T CHRNB3 Silent p.L340L 0.14 TCGA-EE-A29M-06 8 43025809 43025809 C T HGSNAT Missense_Mutation p.R239C 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 8 51705277 51705277 C T SNTG1 Missense_Mutation p.S481F 0.16 deleterious(0) probably_damaging(0.933) TCGA-EE-A29M-06 8 52359611 52359611 G A PXDNL Missense_Mutation p.S493L 0.16 tolerated(0.3) benign(0.009) TCGA-EE-A29M-06 8 54142358 54142358 G A OPRK1 Silent p.F214F 0.31 TCGA-EE-A29M-06 8 55538174 55538174 G A RP1 Missense_Mutation p.E578K 0.18 tolerated(0.11) benign(0.091) TCGA-EE-A29M-06 8 57353899 57353899 C T PENK Missense_Mutation p.E246K 0.39 deleterious(0.01) benign(0.269) TCGA-EE-A29M-06 8 62289207 62289207 G A CLVS1 Missense_Mutation p.E167K 0.27 deleterious(0) probably_damaging(0.992) TCGA-EE-A29M-06 8 6302730 6302730 C T MCPH1 Missense_Mutation p.S496L 0.36 tolerated(0.67) benign(0) TCGA-EE-A29M-06 8 66517710 66517710 G A ARMC1 Nonsense_Mutation p.Q177* 0.15 TCGA-EE-A29M-06 8 6728095 6728095 C T DEFB1 3'Flank 0.25 TCGA-EE-A29M-06 8 6728164 6728164 C T DEFB1 3'UTR 0.14 TCGA-EE-A29M-06 8 68968209 68968209 G A PREX2 Missense_Mutation p.S413N 0.12 tolerated(1) probably_damaging(0.992) TCGA-EE-A29M-06 8 68981328 68981328 G A PREX2 Missense_Mutation p.G467E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 8 68989631 68989631 G A PREX2 Splice_Site p.X524_splice 0.30 TCGA-EE-A29M-06 8 69030803 69030803 G A PREX2 Silent p.R1115R 0.35 TCGA-EE-A29M-06 8 70517105 70517105 G A SULF1 Missense_Mutation p.E439K 0.14 tolerated(0.26) benign(0.034) TCGA-EE-A29M-06 8 72111625 72111625 G A EYA1 Missense_Mutation p.H577Y 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29M-06 8 72127655 72127655 G C EYA1 Missense_Mutation p.P522A 0.20 deleterious(0.01) benign(0.033) TCGA-EE-A29M-06 8 73480497 73480497 G A KCNB2 Silent p.R176R 0.25 TCGA-EE-A29M-06 8 73921227 73921227 G A TERF1 Missense_Mutation p.E36K 0.27 tolerated_low_confidence(0.07) benign(0.032) TCGA-EE-A29M-06 8 75757424 75757424 C T PI15 Missense_Mutation p.P152S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29M-06 8 86193649 86193649 C T CA13 3'UTR 0.19 TCGA-EE-A29M-06 8 87683207 87683207 C T CNGB3 Missense_Mutation p.G153E 0.23 tolerated(0.11) benign(0.009) TCGA-EE-A29M-06 8 88885042 88885042 C T DCAF4L2 Silent p.R386R 0.29 TCGA-EE-A29M-06 8 88885043 88885043 C T DCAF4L2 Missense_Mutation p.R386Q 0.29 tolerated(0.44) benign(0.014) TCGA-EE-A29M-06 8 88885075 88885075 G A DCAF4L2 Silent p.F375F 0.27 TCGA-EE-A29M-06 8 88885827 88885827 G A DCAF4L2 Missense_Mutation p.R125W 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A29M-06 8 8998818 8998818 G A PPP1R3B Missense_Mutation p.S115F 0.19 deleterious(0.02) benign(0.049) TCGA-EE-A29M-06 8 92346565 92346565 G A SLC26A7 Missense_Mutation p.E229K 0.28 deleterious(0.05) probably_damaging(0.919) TCGA-EE-A29M-06 8 96166770 96166770 C T PLEKHF2 Silent p.F166F 0.17 TCGA-EE-A29M-06 8 97156938 97156938 C T GDF6 Missense_Mutation p.M407I 0.28 deleterious(0.02) possibly_damaging(0.875) TCGA-EE-A29M-06 9 100194369 100194369 C T TDRD7 Missense_Mutation p.P138S 0.23 tolerated(0.34) benign(0.024) TCGA-EE-A29M-06 9 100380128 100380128 G A TSTD2 Missense_Mutation p.L172F 0.18 deleterious(0) probably_damaging(0.962) TCGA-EE-A29M-06 9 100693425 100693425 C T HEMGN Silent p.L84L 0.26 TCGA-EE-A29M-06 9 104124832 104124832 C T BAAT Missense_Mutation p.D379N 0.40 tolerated(0.49) benign(0.001) TCGA-EE-A29M-06 9 104171062 104171062 C T ZNF189 Missense_Mutation p.H338Y 0.22 deleterious(0) probably_damaging(0.917) TCGA-EE-A29M-06 9 104184038 104184038 C T ALDOB 3'UTR 0.31 TCGA-EE-A29M-06 9 104302837 104302837 C T RNF20 Silent p.L121L 0.32 TCGA-EE-A29M-06 9 104357120 104357120 C T PPP3R2 Silent p.K31K 0.27 TCGA-EE-A29M-06 9 107298405 107298405 C T OR13C3 Silent p.V230V 0.34 TCGA-EE-A29M-06 9 107331532 107331532 C T OR13C8 Silent p.F28F 0.24 TCGA-EE-A29M-06 9 107332092 107332092 C T OR13C8 Missense_Mutation p.S215F 0.26 tolerated(1) benign(0.023) TCGA-EE-A29M-06 9 107380314 107380314 G A OR13C9 Missense_Mutation p.P58S 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 9 107568612 107568612 G A ABCA1 Silent p.N1458N 0.30 TCGA-EE-A29M-06 9 109734355 109734355 G A ZNF462 Missense_Mutation p.R2166K 0.28 probably_damaging(0.977) TCGA-EE-A29M-06 9 109734356 109734356 G A ZNF462 Silent p.R2166R 0.28 TCGA-EE-A29M-06 9 112004083 112004083 G A EPB41L4B Intron 0.28 TCGA-EE-A29M-06 9 112172630 112172630 G A PTPN3 Missense_Mutation p.P460L 0.28 tolerated(0.14) benign(0.001) TCGA-EE-A29M-06 9 112900002 112900002 C T PALM2-AKAP2 Silent p.F726F 0.22 TCGA-EE-A29M-06 9 113066797 113066797 T G TXNDC8 Silent p.R91R 0.25 TCGA-EE-A29M-06 9 113066803 113066803 A T TXNDC8 Missense_Mutation p.F89I 0.25 deleterious(0.01) benign(0.306) TCGA-EE-A29M-06 9 113168712 113168712 G A SVEP1 Silent p.F3056F 0.26 TCGA-EE-A29M-06 9 113173478 113173478 G A SVEP1 Silent p.S2171S 0.28 TCGA-EE-A29M-06 9 113192643 113192643 G A SVEP1 Missense_Mutation p.S1814L 0.30 possibly_damaging(0.819) TCGA-EE-A29M-06 9 113241922 113241922 C T SVEP1 Missense_Mutation p.G827E 0.27 possibly_damaging(0.721) TCGA-EE-A29M-06 9 113252033 113252033 G A SVEP1 Silent p.F609F 0.18 TCGA-EE-A29M-06 9 115216316 115216316 G A HSDL2 Missense_Mutation p.E297K 0.22 tolerated(0.55) benign(0.004) TCGA-EE-A29M-06 9 116346364 116346364 G A RGS3 Missense_Mutation p.G891E 0.26 tolerated(1) benign(0.006) TCGA-EE-A29M-06 9 117063353 117063353 G A COL27A1 Missense_Mutation p.G1568E 0.23 unknown(0) TCGA-EE-A29M-06 9 117106061 117106061 G A AKNA Silent p.S1228S 0.23 TCGA-EE-A29M-06 9 117129925 117129925 G A AKNA Silent p.P542P 0.24 TCGA-EE-A29M-06 9 117826195 117826195 G A TNC Missense_Mutation p.P1214S 0.26 tolerated(0.59) benign(0.126) TCGA-EE-A29M-06 9 117853253 117853253 G A TNC Silent p.F15F 0.28 TCGA-EE-A29M-06 9 118997653 118997653 G A PAPPA Silent p.G823G 0.26 TCGA-EE-A29M-06 9 118997908 118997908 C T PAPPA Silent p.F908F 0.28 TCGA-EE-A29M-06 9 119158943 119158943 C T PAPPA 3'UTR 0.33 TCGA-EE-A29M-06 9 119903672 119903672 G A ASTN2 Intron 0.21 TCGA-EE-A29M-06 9 119903704 119903704 C T ASTN2 Intron 0.21 TCGA-EE-A29M-06 9 119976733 119976733 G A ASTN2 Missense_Mutation p.H307Y 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29M-06 9 120053707 120053707 G T ASTN2 Silent p.S176S 0.27 TCGA-EE-A29M-06 9 120053793 120053793 C T ASTN2 Splice_Site p.X148_splice 0.32 TCGA-EE-A29M-06 9 120475341 120475341 C T TLR4 Missense_Mutation p.S312L 0.29 tolerated(0.06) benign(0.049) TCGA-EE-A29M-06 9 121929407 121929407 C T BRINP1 Silent p.T747T 0.26 TCGA-EE-A29M-06 9 121930199 121930199 G A BRINP1 Silent p.F483F 0.28 TCGA-EE-A29M-06 9 123675969 123675969 G A TRAF1 Silent p.S114S 0.26 TCGA-EE-A29M-06 9 125075623 125075623 G A MRRF Silent p.K223K 0.27 TCGA-EE-A29M-06 9 125152509 125152509 C T PTGS1 Silent p.I443I 0.35 TCGA-EE-A29M-06 9 125240164 125240164 G A OR1J1 Silent p.L14L 0.29 TCGA-EE-A29M-06 9 125330095 125330095 C T OR1L8 Missense_Mutation p.R221Q 0.18 tolerated(0.29) benign(0.076) TCGA-EE-A29M-06 9 125424585 125424585 C T OR1L1 Silent p.I197I 0.27 TCGA-EE-A29M-06 9 126132962 126132962 C T CRB2 Missense_Mutation p.L544F 0.29 deleterious(0.04) possibly_damaging(0.849) TCGA-EE-A29M-06 9 126219702 126219702 G A DENND1A Nonsense_Mutation p.R371* 0.28 TCGA-EE-A29M-06 9 126777551 126777551 G A LHX2 Missense_Mutation p.M158I 0.28 tolerated(0.12) benign(0.294) TCGA-EE-A29M-06 9 12695584 12695584 A G TYRP1 Missense_Mutation p.K152R 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 9 127113138 127113138 G A NEK6 Missense_Mutation p.C319Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 9 129458605 129458605 G A LMX1B Missense_Mutation p.D366N 0.28 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A29M-06 9 130167266 130167266 C T SLC2A8 Silent p.I382I 0.27 TCGA-EE-A29M-06 9 130287345 130287345 G A FAM129B Missense_Mutation p.S138F 0.28 tolerated(0.13) possibly_damaging(0.897) TCGA-EE-A29M-06 9 130423393 130423393 C T STXBP1 Missense_Mutation p.A113V 0.27 tolerated(0.15) benign(0.045) TCGA-EE-A29M-06 9 130698837 130698837 A C DPM2 Missense_Mutation p.F64C 0.23 tolerated(0.15) benign(0.016) TCGA-EE-A29M-06 9 130700157 130700157 C T DPM2 5'UTR 0.20 TCGA-EE-A29M-06 9 131133654 131133654 C T URM1 5'UTR 0.24 TCGA-EE-A29M-06 9 131768355 131768355 C T NUP188 Silent p.T1632T 0.19 TCGA-EE-A29M-06 9 132484680 132484680 G A PRRX2 3'UTR 0.21 TCGA-EE-A29M-06 9 133333811 133333811 G A ASS1 Silent p.R66R 0.22 TCGA-EE-A29M-06 9 133961020 133961020 G A LAMC3 Silent p.A1380A 0.26 TCGA-EE-A29M-06 9 135201741 135201741 G A SETX Silent p.F1748F 0.33 TCGA-EE-A29M-06 9 135205748 135205748 G A SETX Missense_Mutation p.P413S 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A29M-06 9 135374845 135374845 G A C9orf171 Missense_Mutation p.V164M 0.27 deleterious(0) probably_damaging(0.922) TCGA-EE-A29M-06 9 136136727 136136727 C T ABO RNA 0.41 TCGA-EE-A29M-06 9 136319683 136319683 G A ADAMTS13 Missense_Mutation p.S1064N 0.29 tolerated(0.14) benign(0.365) TCGA-EE-A29M-06 9 136507497 136507497 C T DBH Missense_Mutation p.P219S 0.20 tolerated(0.11) benign(0.367) TCGA-EE-A29M-06 9 138011906 138011906 C T OLFM1 Missense_Mutation p.S429F 0.25 tolerated(0.24) probably_damaging(0.951) TCGA-EE-A29M-06 9 138662882 138662882 G A KCNT1 Missense_Mutation p.G650E 0.28 tolerated(0.37) benign(0.13) TCGA-EE-A29M-06 9 138713009 138713009 G A CAMSAP1 Silent p.F1166F 0.21 TCGA-EE-A29M-06 9 139252507 139252507 A G GPSM1 Silent p.V621V 0.24 TCGA-EE-A29M-06 9 139310781 139310781 G A PMPCA Missense_Mutation p.E191K 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 9 139718065 139718065 C T RABL6 Silent p.I73I 0.43 TCGA-EE-A29M-06 9 139912449 139912449 G A ABCA2 Missense_Mutation p.P691L 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 9 139935265 139935265 C T NPDC1 Splice_Site p.X186_splice 0.15 TCGA-EE-A29M-06 9 14748411 14748411 C T FREM1 Silent p.G1928G 0.29 TCGA-EE-A29M-06 9 14776177 14776177 C T FREM1 Silent p.R1489R 0.17 TCGA-EE-A29M-06 9 14806713 14806713 C T FREM1 Missense_Mutation p.E1074K 0.18 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 9 15564025 15564025 C T CCDC171 5'UTR 0.29 TCGA-EE-A29M-06 9 19083038 19083038 G A HAUS6 Missense_Mutation p.R235W 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A29M-06 9 21077760 21077760 G A IFNB1 Nonsense_Mutation p.Q37* 0.29 TCGA-EE-A29M-06 9 21201635 21201635 A G IFNA7 Missense_Mutation p.F177S 0.22 tolerated(1) benign(0.01) TCGA-EE-A29M-06 9 21202135 21202135 G A IFNA7 Silent p.V10V 0.29 TCGA-EE-A29M-06 9 21350614 21350614 G A IFNA6 Silent p.F91F 0.24 TCGA-EE-A29M-06 9 21409800 21409800 C T IFNA8 3'UTR 0.23 TCGA-EE-A29M-06 9 26913937 26913937 G A PLAA Missense_Mutation p.R499C 0.33 deleterious(0) possibly_damaging(0.858) TCGA-EE-A29M-06 9 27205036 27205036 G A TEK Silent p.R779R 0.24 TCGA-EE-A29M-06 9 27359163 27359163 G A MOB3B Missense_Mutation p.H164Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 9 32431821 32431821 G A ACO1 Missense_Mutation p.E611K 0.25 tolerated(0.52) benign(0.02) TCGA-EE-A29M-06 9 32632636 32632636 C T TAF1L Missense_Mutation p.G981E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 9 32634966 32634966 A G TAF1L Silent p.S204S 0.29 TCGA-EE-A29M-06 9 33351567 33351567 A C NFX1 Missense_Mutation p.N812H 0.18 tolerated(0.05) possibly_damaging(0.665) TCGA-EE-A29M-06 9 34977564 34977564 C T KIAA1045 Silent p.I344I 0.18 TCGA-EE-A29M-06 9 35066696 35066696 C T VCP Missense_Mutation p.E141K 0.19 tolerated(0.15) benign(0.296) TCGA-EE-A29M-06 9 35313969 35313969 C T UNC13B Nonsense_Mutation p.R384* 0.26 TCGA-EE-A29M-06 9 35399233 35399233 G A UNC13B Missense_Mutation p.M1301I 0.29 tolerated(0.17) possibly_damaging(0.593) TCGA-EE-A29M-06 9 35555487 35555487 C T RUSC2 Silent p.P815P 0.39 TCGA-EE-A29M-06 9 35555488 35555488 C T RUSC2 Missense_Mutation p.P816S 0.39 deleterious(0.01) benign(0.05) TCGA-EE-A29M-06 9 35812260 35812260 G A SPAG8 5'UTR 0.17 TCGA-EE-A29M-06 9 35869520 35869520 C T OR13J1 Silent p.R293R 0.27 TCGA-EE-A29M-06 9 36080601 36080601 G A RECK Splice_Site p.X136_splice 0.30 TCGA-EE-A29M-06 9 37740201 37740201 C T FRMPD1 Missense_Mutation p.P559L 0.24 tolerated(0.31) benign(0.004) TCGA-EE-A29M-06 9 37919851 37919851 G A SHB Silent p.S499S 0.19 TCGA-EE-A29M-06 9 39178229 39178229 G A CNTNAP3 Missense_Mutation p.H223Y 0.24 deleterious(0.05) benign(0.098) TCGA-EE-A29M-06 9 39888229 39888229 G A SPATA31A2 Missense_Mutation p.E406K 0.28 tolerated(0.22) possibly_damaging(0.682) TCGA-EE-A29M-06 9 40772475 40772475 C T ZNF658 Missense_Mutation p.G934R 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A29M-06 9 40772476 40772476 C T ZNF658 Silent p.T933T 0.26 TCGA-EE-A29M-06 9 40772611 40772611 C T ZNF658 Silent p.G888G 0.25 TCGA-EE-A29M-06 9 5185587 5185587 G A INSL6 Missense_Mutation p.R6C 0.40 tolerated(0.54) benign(0) TCGA-EE-A29M-06 9 5231621 5231621 C T INSL4 Missense_Mutation p.P33L 0.33 tolerated(0.69) probably_damaging(0.958) TCGA-EE-A29M-06 9 5569981 5569981 G A PDCD1LG2 3'UTR 0.31 TCGA-EE-A29M-06 9 5569982 5569982 G A PDCD1LG2 3'UTR 0.32 TCGA-EE-A29M-06 9 5805111 5805111 G A ERMP1 Silent p.L610L 0.23 TCGA-EE-A29M-06 9 6588438 6588438 G A GLDC Missense_Mutation p.S557F 0.23 deleterious(0) probably_damaging(0.935) TCGA-EE-A29M-06 9 70918734 70918734 C T FOXD4L3 Silent p.A289A 0.29 TCGA-EE-A29M-06 9 72131527 72131527 C T APBA1 Silent p.E200E 0.31 TCGA-EE-A29M-06 9 72333278 72333278 G A PTAR1 Silent p.L397L 0.11 TCGA-EE-A29M-06 9 77415335 77415335 G A TRPM6 Silent p.A691A 0.32 TCGA-EE-A29M-06 9 77418784 77418784 C T TRPM6 Missense_Mutation p.G553R 0.19 tolerated(0.08) benign(0.009) TCGA-EE-A29M-06 9 78784642 78784642 G A PCSK5 Missense_Mutation p.G548R 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A29M-06 9 78784740 78784740 G A PCSK5 Silent p.R580R 0.21 TCGA-EE-A29M-06 9 78804056 78804056 G A PCSK5 Missense_Mutation p.M809I 0.18 deleterious(0.01) benign(0.354) TCGA-EE-A29M-06 9 79117275 79117275 G A GCNT1 5'UTR 0.21 TCGA-EE-A29M-06 9 79117396 79117396 G A GCNT1 Silent p.R33R 0.30 TCGA-EE-A29M-06 9 79252384 79252384 C T PRUNE2 Silent p.R2971R 0.30 TCGA-EE-A29M-06 9 79320803 79320803 C T PRUNE2 Silent p.V2129V 0.23 TCGA-EE-A29M-06 9 79323922 79323922 C T PRUNE2 Missense_Mutation p.E1090K 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29M-06 9 8338977 8338977 G A PTPRD Missense_Mutation p.A1775V 0.24 deleterious(0) probably_damaging(0.991) TCGA-EE-A29M-06 9 84530474 84530474 C G SPATA31D5P RNA 0.20 TCGA-EE-A29M-06 9 84607563 84607563 G A SPATA31D1 Silent p.E726E 0.27 TCGA-EE-A29M-06 9 84608332 84608332 C T SPATA31D1 Missense_Mutation p.L983F 0.24 tolerated(0.07) probably_damaging(0.934) TCGA-EE-A29M-06 9 86571504 86571504 G A C9orf64 5'UTR 0.29 TCGA-EE-A29M-06 9 90343257 90343257 C T CTSL Silent p.A114A 0.26 TCGA-EE-A29M-06 9 90534129 90534129 G A SPATA31C1 Intron 0.34 TCGA-EE-A29M-06 9 91605829 91605829 G A C9orf47 5'Flank 0.25 TCGA-EE-A29M-06 9 91964815 91964815 C T SECISBP2 Silent p.F621F 0.32 TCGA-EE-A29M-06 9 91993723 91993723 C T SEMA4D Missense_Mutation p.D829N 0.24 tolerated(0.21) benign(0.051) TCGA-EE-A29M-06 9 94538029 94538029 G A ROR2 Silent p.L57L 0.23 TCGA-EE-A29M-06 9 95021262 95021262 G A IARS Silent p.S630S 0.31 TCGA-EE-A29M-06 9 95027254 95027254 G A IARS Missense_Mutation p.P553S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 9 95078256 95078256 G A NOL8 Silent p.P217P 0.29 TCGA-EE-A29M-06 9 95610105 95610105 G A ZNF484 Missense_Mutation p.P324S 0.29 deleterious(0.03) benign(0.023) TCGA-EE-A29M-06 9 96009842 96009842 C T WNK2 Silent p.F520F 0.20 TCGA-EE-A29M-06 9 96051605 96051605 C T WNK2 Silent p.V1560V 0.19 TCGA-EE-A29M-06 9 96051806 96051806 G A WNK2 Silent p.G1627G 0.33 TCGA-EE-A29M-06 9 96416852 96416852 C T PHF2 Missense_Mutation p.P316L 0.24 deleterious(0) unknown(0) TCGA-EE-A29M-06 9 97730049 97730049 C T C9orf3 Nonsense_Mutation p.Q628* 0.22 TCGA-EE-A29M-06 X 100291999 100291999 G A TRMT2B Missense_Mutation p.P168S 0.43 tolerated(0.12) benign(0.126) TCGA-EE-A29M-06 X 101382381 101382381 G A TCEAL2 Nonsense_Mutation p.W193* 0.35 TCGA-EE-A29M-06 X 101857410 101857410 C T ARMCX5 Missense_Mutation p.S114F 0.42 tolerated(0.07) benign(0.01) TCGA-EE-A29M-06 X 105150443 105150443 G A NRK Silent p.T294T 0.44 TCGA-EE-A29M-06 X 106893276 106893276 G T PRPS1 3'UTR 0.33 TCGA-EE-A29M-06 X 107170186 107170186 C T MID2 Silent p.S697S 0.44 TCGA-EE-A29M-06 X 110544971 110544971 C T DCX Missense_Mutation p.D424N 0.45 tolerated_low_confidence(0.07) benign(0.001) TCGA-EE-A29M-06 X 115304600 115304600 G A AGTR2 Missense_Mutation p.R356K 0.36 tolerated(0.55) benign(0.038) TCGA-EE-A29M-06 X 118968933 118968933 G A UPF3B Missense_Mutation p.P454S 0.42 tolerated(0.68) benign(0.016) TCGA-EE-A29M-06 X 118974617 118974617 G A UPF3B Nonsense_Mutation p.Q280* 0.38 TCGA-EE-A29M-06 X 119292955 119292955 G A RHOXF2 Silent p.E38E 0.49 TCGA-EE-A29M-06 X 120008991 120008991 C T CT47B1 Silent p.G178G 0.41 TCGA-EE-A29M-06 X 120008992 120008992 C T CT47B1 Missense_Mutation p.G178E 0.42 tolerated(0.16) probably_damaging(0.998) TCGA-EE-A29M-06 X 122758411 122758411 T G THOC2 Missense_Mutation p.D1056A 0.47 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29M-06 X 123515010 123515010 G A TENM1 Silent p.V2525V 0.34 TCGA-EE-A29M-06 X 123838900 123838900 G A TENM1 Silent p.I326I 0.42 TCGA-EE-A29M-06 X 129053176 129053176 T G UTP14A Missense_Mutation p.I188S 0.36 deleterious(0) possibly_damaging(0.551) TCGA-EE-A29M-06 X 129813720 129813720 G A ENOX2 Missense_Mutation p.L115F 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29M-06 X 130217855 130217855 G A ARHGAP36 Missense_Mutation p.R156Q 0.33 tolerated(0.82) benign(0) TCGA-EE-A29M-06 X 130409177 130409177 C T IGSF1 Missense_Mutation p.E1095K 0.39 tolerated(0.09) possibly_damaging(0.547) TCGA-EE-A29M-06 X 130419851 130419851 G A IGSF1 Missense_Mutation p.S90L 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A29M-06 X 132160489 132160489 G A USP26 Missense_Mutation p.S587L 0.39 tolerated(0.44) benign(0.018) TCGA-EE-A29M-06 X 132161803 132161803 C T USP26 Missense_Mutation p.G149E 0.52 tolerated(0.14) benign(0.065) TCGA-EE-A29M-06 X 132730588 132730588 C T GPC3 Missense_Mutation p.D508N 0.30 tolerated(0.07) benign(0.21) TCGA-EE-A29M-06 X 134991025 134991025 G A SAGE1 Missense_Mutation p.A482T 0.38 deleterious(0) benign(0.077) TCGA-EE-A29M-06 X 134991026 134991026 C A SAGE1 Missense_Mutation p.A482D 0.37 deleterious(0) benign(0.257) TCGA-EE-A29M-06 X 134993770 134993770 G A SAGE1 Missense_Mutation p.E727K 0.42 tolerated(1) probably_damaging(0.996) TCGA-EE-A29M-06 X 135496359 135496359 G A GPR112 Silent p.Q3026Q 0.34 TCGA-EE-A29M-06 X 13588040 13588040 C T EGFL6 Silent p.F20F 0.36 TCGA-EE-A29M-06 X 13801602 13801602 G A GPM6B Missense_Mutation p.S136F 0.45 deleterious(0.04) probably_damaging(0.961) TCGA-EE-A29M-06 X 140969394 140969394 C T MAGEC3 Silent p.L241L 0.44 TCGA-EE-A29M-06 X 140983291 140983291 G A MAGEC3 Missense_Mutation p.E357K 0.36 tolerated(0.07) benign(0.292) TCGA-EE-A29M-06 X 140993398 140993398 C T MAGEC1 Missense_Mutation p.P70S 0.37 tolerated_low_confidence(0.13) benign(0) TCGA-EE-A29M-06 X 140993536 140993536 C T MAGEC1 Nonsense_Mutation p.Q116* 0.45 TCGA-EE-A29M-06 X 142717586 142717586 C T SLITRK4 Missense_Mutation p.G447S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 X 148797942 148797942 G A MAGEA11 Missense_Mutation p.E266K 0.47 tolerated(1) benign(0.089) TCGA-EE-A29M-06 X 150791502 150791502 G A PASD1 Missense_Mutation p.G171E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 X 150840850 150840850 G A PASD1 Missense_Mutation p.E545K 0.35 tolerated_low_confidence(0.21) possibly_damaging(0.486) TCGA-EE-A29M-06 X 151128445 151128445 G A GABRE Missense_Mutation p.S217F 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29M-06 X 151284172 151284172 T A RP11-1007I13.4 RNA 0.33 TCGA-EE-A29M-06 X 151366215 151366215 T A GABRA3 Missense_Mutation p.K274I 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 X 151820122 151820122 G A GABRQ Silent p.E345E 0.36 TCGA-EE-A29M-06 X 151935446 151935446 C T MAGEA3 Missense_Mutation p.D241N 0.37 deleterious(0.04) benign(0.008) TCGA-EE-A29M-06 X 153594953 153594953 G A FLNA Missense_Mutation p.P348S 0.41 deleterious(0) possibly_damaging(0.874) TCGA-EE-A29M-06 X 154156898 154156898 C T F8 Missense_Mutation p.E1723K 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A29M-06 X 154175986 154175986 C T F8 Silent p.S700S 0.30 TCGA-EE-A29M-06 X 154185239 154185239 C T F8 Missense_Mutation p.G582E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 X 17746877 17746877 T C NHS Missense_Mutation p.L1423S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 X 18213556 18213556 T C BEND2 Missense_Mutation p.K347R 0.27 tolerated(0.09) benign(0.118) TCGA-EE-A29M-06 X 18234812 18234812 C T BEND2 Missense_Mutation p.D23N 0.37 deleterious_low_confidence(0.02) benign(0.014) TCGA-EE-A29M-06 X 19369387 19369387 C T PDHA1 Intron 0.41 TCGA-EE-A29M-06 X 22129679 22129679 G A PHEX Splice_Site p.X391_splice 0.38 TCGA-EE-A29M-06 X 22292216 22292216 G A ZNF645 Missense_Mutation p.E370K 0.38 deleterious(0.02) possibly_damaging(0.501) TCGA-EE-A29M-06 X 23398358 23398358 C T PTCHD1 Silent p.F334F 0.42 TCGA-EE-A29M-06 X 29973871 29973871 C T IL1RAPL1 Silent p.A675A 0.44 TCGA-EE-A29M-06 X 30260176 30260176 C T MAGEB4 5'UTR 0.38 TCGA-EE-A29M-06 X 302650 302650 C T PPP2R3B Missense_Mutation p.M351I 0.38 tolerated(0.61) benign(0.144) TCGA-EE-A29M-06 X 31152236 31152236 G A DMD Missense_Mutation p.S3666F 0.38 possibly_damaging(0.683) TCGA-EE-A29M-06 X 3239853 3239853 A C MXRA5 Missense_Mutation p.D1291E 0.38 tolerated(1) benign(0) TCGA-EE-A29M-06 X 34148766 34148766 G A FAM47A Missense_Mutation p.R544C 0.44 tolerated(0.18) possibly_damaging(0.835) TCGA-EE-A29M-06 X 34150082 34150082 G A FAM47A Missense_Mutation p.S105F 0.39 deleterious(0) benign(0.3) TCGA-EE-A29M-06 X 34960955 34960955 G A FAM47B Missense_Mutation p.D3N 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A29M-06 X 34961495 34961495 C T FAM47B Missense_Mutation p.P183S 0.35 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A29M-06 X 35974178 35974178 C T CXorf22 Silent p.F425F 0.39 TCGA-EE-A29M-06 X 36116914 36116914 C T CHDC2 Nonsense_Mutation p.Q216* 0.44 TCGA-EE-A29M-06 X 36163072 36163072 C T CHDC2 3'UTR 0.31 TCGA-EE-A29M-06 X 37312440 37312440 G A PRRG1 Missense_Mutation p.G75R 0.47 tolerated(0.19) probably_damaging(0.994) TCGA-EE-A29M-06 X 43628571 43628571 C T MAOB Missense_Mutation p.E444K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29M-06 X 46913940 46913940 G A JADE3 Silent p.E451E 0.45 TCGA-EE-A29M-06 X 47775871 47775871 C T ZNF81 Missense_Mutation p.P609L 0.35 deleterious(0) probably_damaging(0.932) TCGA-EE-A29M-06 X 47979002 47979002 G A SSX6 RNA 0.38 TCGA-EE-A29M-06 X 48372729 48372729 C T PORCN Missense_Mutation p.T274I 0.30 deleterious(0.04) possibly_damaging(0.833) TCGA-EE-A29M-06 X 49957961 49957961 G A AKAP4 Missense_Mutation p.S468F 0.45 deleterious(0) probably_damaging(0.98) TCGA-EE-A29M-06 X 49963310 49963310 C T AKAP4 Missense_Mutation p.V41M 0.26 deleterious(0.03) possibly_damaging(0.55) TCGA-EE-A29M-06 X 50134468 50134468 C A DGKK RNA 0.45 TCGA-EE-A29M-06 X 52673633 52673633 G A SSX7 3'UTR 0.46 TCGA-EE-A29M-06 X 52681979 52681979 G A SSX7 Missense_Mutation p.S42F 0.34 tolerated(0.28) benign(0.001) TCGA-EE-A29M-06 X 52825356 52825356 C T SPANXN5 3'UTR 0.30 TCGA-EE-A29M-06 X 52825389 52825389 C T SPANXN5 3'UTR 0.32 TCGA-EE-A29M-06 X 52825638 52825638 C T SPANXN5 Missense_Mutation p.E37K 0.43 tolerated(0.18) benign(0.032) TCGA-EE-A29M-06 X 52826358 52826358 C T SPANXN5 Missense_Mutation p.E11K 0.26 tolerated(0.45) benign(0.079) TCGA-EE-A29M-06 X 52826386 52826386 C T SPANXN5 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A29M-06 X 53283775 53283775 G A IQSEC2 Silent p.S446S 0.32 TCGA-EE-A29M-06 X 53283776 53283776 G A IQSEC2 Missense_Mutation p.S446F 0.33 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-EE-A29M-06 X 53566728 53566728 G A HUWE1 Missense_Mutation p.P3841L 0.49 unknown(0) TCGA-EE-A29M-06 X 54037565 54037565 G A PHF8 Silent p.F348F 0.44 TCGA-EE-A29M-06 X 54360188 54360188 G A WNK3 5'UTR 0.50 TCGA-EE-A29M-06 X 54951462 54951462 C T TRO Silent p.F482F 0.42 TCGA-EE-A29M-06 X 6069260 6069260 G A NLGN4X Missense_Mutation p.T83I 0.41 tolerated(0.54) probably_damaging(0.991) TCGA-EE-A29M-06 X 63557241 63557241 G A MTMR8 Silent p.V336V 0.35 TCGA-EE-A29M-06 X 65390543 65390543 G A HEPH Missense_Mutation p.R98K 0.46 tolerated(1) benign(0.02) TCGA-EE-A29M-06 X 65486505 65486505 C T HEPH Silent p.F1210F 0.65 TCGA-EE-A29M-06 X 69424823 69424823 C T DGAT2L6 Missense_Mutation p.P294L 0.44 deleterious(0.03) probably_damaging(1) TCGA-EE-A29M-06 X 70466338 70466338 G A ZMYM3 Missense_Mutation p.P813S 0.38 tolerated(0.76) benign(0.057) TCGA-EE-A29M-06 X 72433935 72433935 C T NAP1L2 Missense_Mutation p.E132K 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A29M-06 X 73046874 73046874 C T XIST RNA 0.43 TCGA-EE-A29M-06 X 73065803 73065803 T A XIST RNA 0.39 TCGA-EE-A29M-06 X 73065804 73065804 G T XIST RNA 0.41 TCGA-EE-A29M-06 X 73963843 73963843 C T KIAA2022 Silent p.G183G 0.38 TCGA-EE-A29M-06 X 7811193 7811193 G A VCX 5'UTR 0.21 TCGA-EE-A29M-06 X 8565122 8565122 G A KAL1 Missense_Mutation p.S165L 0.48 tolerated(0.1) benign(0.015) TCGA-EE-A29M-06 X 91134201 91134201 C T PCDH11X Missense_Mutation p.P988S 0.41 tolerated(0.25) probably_damaging(0.988) TCGA-EE-A29M-06 X 9665457 9665457 C T TBL1X Missense_Mutation p.P368S 0.35 tolerated(0.54) benign(0.006) TCGA-EE-A29M-06 X 99597041 99597041 C T PCDH19 Missense_Mutation p.S903N 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A29M-06 X 99933419 99933419 G A SYTL4 Silent p.F612F 0.39 TCGA-EE-A29N-06 10 102762458 102762458 T A LZTS2 Missense_Mutation p.F55I 0.13 tolerated(0.41) possibly_damaging(0.696) TCGA-EE-A29N-06 10 115922738 115922738 G A C10orf118 Missense_Mutation p.P97L 0.13 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-EE-A29N-06 10 115922739 115922739 G A C10orf118 Missense_Mutation p.P97S 0.14 tolerated_low_confidence(0.14) benign(0.035) TCGA-EE-A29N-06 10 122349026 122349026 G A PPAPDC1A 3'UTR 0.17 TCGA-EE-A29N-06 10 122630798 122630798 C T WDR11 Missense_Mutation p.R471C 0.14 deleterious(0) probably_damaging(0.951) TCGA-EE-A29N-06 10 124094415 124094415 A C BTBD16 Missense_Mutation p.K395T 0.10 deleterious(0.02) possibly_damaging(0.888) TCGA-EE-A29N-06 10 124339135 124339135 G A DMBT1 Missense_Mutation p.D241N 0.15 tolerated(0.72) benign(0.28) TCGA-EE-A29N-06 10 127412404 127412404 C T EDRF1 Missense_Mutation p.P137S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 10 134627746 134627746 G A TTC40 Missense_Mutation p.P2433L 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29N-06 10 135095760 135095760 G A TUBGCP2 Silent p.A820A 0.19 TCGA-EE-A29N-06 10 135095761 135095761 G A TUBGCP2 Missense_Mutation p.A820V 0.19 tolerated(0.1) benign(0.003) TCGA-EE-A29N-06 10 14890856 14890856 C T HSPA14 Missense_Mutation p.P113L 0.16 deleterious(0.01) possibly_damaging(0.737) TCGA-EE-A29N-06 10 15120504 15120504 G A ACBD7 3'UTR 0.14 TCGA-EE-A29N-06 10 20290791 20290791 G A PLXDC2 Missense_Mutation p.R67K 0.24 deleterious(0) probably_damaging(0.99) TCGA-EE-A29N-06 10 24874692 24874692 G C ARHGAP21 Nonsense_Mutation p.S1509* 0.14 TCGA-EE-A29N-06 10 25839947 25839947 C T GPR158 Missense_Mutation p.L483F 0.24 deleterious(0) probably_damaging(0.909) TCGA-EE-A29N-06 10 27703027 27703027 C T PTCHD3 Silent p.P51P 0.19 TCGA-EE-A29N-06 10 29821661 29821661 G A SVIL Silent p.T545T 0.17 TCGA-EE-A29N-06 10 30317232 30317232 C T KIAA1462 Silent p.K615K 0.14 TCGA-EE-A29N-06 10 6002399 6002399 G A IL15RA Missense_Mutation p.H172Y 0.17 tolerated(0.54) probably_damaging(0.922) TCGA-EE-A29N-06 10 61834589 61834589 T C ANK3 Missense_Mutation p.Q2017R 0.26 benign(0.011) TCGA-EE-A29N-06 10 61846547 61846547 G A ANK3 Silent p.F1212F 0.11 TCGA-EE-A29N-06 10 61955959 61955959 G A ANK3 Nonsense_Mutation p.Q611* 0.20 TCGA-EE-A29N-06 10 70644203 70644203 C T STOX1 Silent p.S217S 0.27 TCGA-EE-A29N-06 10 71391546 71391546 C T C10orf35 Missense_Mutation p.P16L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 10 74899442 74899442 G C ECD Missense_Mutation p.P427R 0.15 deleterious(0.03) possibly_damaging(0.905) TCGA-EE-A29N-06 10 85981822 85981822 G A LRIT2 Missense_Mutation p.R503C 0.19 tolerated(0.11) benign(0.011) TCGA-EE-A29N-06 10 88768937 88768937 C T RP11-96C23.10 3'Flank 0.12 TCGA-EE-A29N-06 10 90435980 90435980 G A LIPF Silent p.G311G 0.12 TCGA-EE-A29N-06 10 95076544 95076544 C T MYOF Silent p.T1875T 0.13 TCGA-EE-A29N-06 11 100061871 100061871 C T CNTN5 Missense_Mutation p.P532S 0.18 tolerated(0.24) benign(0.41) TCGA-EE-A29N-06 11 104971471 104971471 G A CARD17 Missense_Mutation p.R15C 0.09 tolerated(0.09) benign(0.013) TCGA-EE-A29N-06 11 106680984 106680984 A G GUCY1A2 Missense_Mutation p.L476S 0.10 deleterious(0) probably_damaging(0.991) TCGA-EE-A29N-06 11 113295295 113295295 C T DRD2 Missense_Mutation p.G27R 0.25 tolerated(0.26) benign(0.002) TCGA-EE-A29N-06 11 114168875 114168875 G A NNMT Silent p.G119G 0.15 TCGA-EE-A29N-06 11 118007702 118007702 G A SCN4B 3'UTR 0.27 TCGA-EE-A29N-06 11 119001634 119001634 C T HINFP Silent p.D127D 0.15 TCGA-EE-A29N-06 11 119058144 119058144 G A PDZD3 Missense_Mutation p.G166S 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29N-06 11 123909597 123909597 G A OR10G7 Silent p.L38L 0.12 TCGA-EE-A29N-06 11 124120671 124120671 G A OR8G1 Silent p.V83V 0.10 TCGA-EE-A29N-06 11 126141523 126141523 C T FOXRED1 Nonsense_Mutation p.R93* 0.16 TCGA-EE-A29N-06 11 128772520 128772520 C T C11orf45 Missense_Mutation p.D124N 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.728) TCGA-EE-A29N-06 11 130079580 130079580 C T ST14 Silent p.S810S 0.19 TCGA-EE-A29N-06 11 18566188 18566188 C T UEVLD Missense_Mutation p.E348K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29N-06 11 32675583 32675583 C T CCDC73 Missense_Mutation p.E259K 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A29N-06 11 34160824 34160824 C T NAT10 Silent p.A766A 0.19 TCGA-EE-A29N-06 11 44958373 44958373 G A TP53I11 Silent p.L105L 0.19 TCGA-EE-A29N-06 11 48286288 48286288 G A OR4X1 Silent p.V292V 0.23 TCGA-EE-A29N-06 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.26 deleterious(0.04) possibly_damaging(0.776) TCGA-EE-A29N-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.15 deleterious(0) probably_damaging(0.965) TCGA-EE-A29N-06 11 5173354 5173354 C T OR52A1 Silent p.K82K 0.11 TCGA-EE-A29N-06 11 56143728 56143728 C T OR8U1 Missense_Mutation p.S210F 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 11 56380166 56380166 G A OR5M1 Silent p.S271S 0.23 TCGA-EE-A29N-06 11 57077973 57077973 G A TNKS1BP1 Missense_Mutation p.P738S 0.15 tolerated(0.54) benign(0.011) TCGA-EE-A29N-06 11 5862614 5862614 C T OR52E6 Missense_Mutation p.G172R 0.10 tolerated(0.07) probably_damaging(0.965) TCGA-EE-A29N-06 11 5905803 5905803 T G OR52E4 Missense_Mutation p.I94S 0.16 deleterious(0) possibly_damaging(0.529) TCGA-EE-A29N-06 11 59282667 59282667 C T OR4D9 Silent p.F94F 0.19 TCGA-EE-A29N-06 11 61048165 61048165 C T VWCE Missense_Mutation p.V419M 0.11 tolerated(0.11) benign(0.181) TCGA-EE-A29N-06 11 61136243 61136243 G A TMEM138 3'UTR 0.36 TCGA-EE-A29N-06 11 62445872 62445872 A T UBXN1 Missense_Mutation p.S77T 0.18 tolerated(0.16) benign(0.008) TCGA-EE-A29N-06 11 64526158 64526158 A G PYGM Silent p.L88L 0.09 TCGA-EE-A29N-06 11 65124431 65124431 C T TIGD3 Silent p.P384P 0.21 TCGA-EE-A29N-06 11 65634494 65634494 C T EFEMP2 Silent p.R409R 0.16 TCGA-EE-A29N-06 11 6789510 6789510 G A OR2AG2 Missense_Mutation p.R227C 0.23 deleterious(0.02) possibly_damaging(0.67) TCGA-EE-A29N-06 11 71808979 71808979 G A LAMTOR1 Intron 0.18 TCGA-EE-A29N-06 11 75852215 75852215 G A UVRAG Missense_Mutation p.V620I 0.14 tolerated_low_confidence(0.26) benign(0.021) TCGA-EE-A29N-06 11 7847391 7847391 G A OR5P3 Silent p.I43I 0.15 TCGA-EE-A29N-06 11 92086160 92086160 G A FAT3 Silent p.A294A 0.21 TCGA-EE-A29N-06 12 10124234 10124234 G A CLEC12A Silent p.Q23Q 0.15 TCGA-EE-A29N-06 12 101510530 101510530 G A ANO4 Missense_Mutation p.E807K 0.19 tolerated(0.69) benign(0.004) TCGA-EE-A29N-06 12 102174052 102174052 C T GNPTAB Missense_Mutation p.E217K 0.16 deleterious(0.04) possibly_damaging(0.905) TCGA-EE-A29N-06 12 108133244 108133244 C T PRDM4 Missense_Mutation p.G670E 0.12 deleterious(0) probably_damaging(0.986) TCGA-EE-A29N-06 12 108641991 108641991 C T WSCD2 Silent p.L523L 0.12 TCGA-EE-A29N-06 12 108641992 108641992 C T WSCD2 Missense_Mutation p.R524W 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 12 110034418 110034418 C T MVK 3'UTR 0.21 TCGA-EE-A29N-06 12 112608926 112608926 G A HECTD4 Missense_Mutation p.A3830V 0.17 possibly_damaging(0.84) TCGA-EE-A29N-06 12 113866236 113866236 G A SDSL Silent p.K62K 0.11 TCGA-EE-A29N-06 12 113866240 113866240 T G SDSL Missense_Mutation p.C64G 0.09 deleterious(0.02) possibly_damaging(0.77) TCGA-EE-A29N-06 12 11546713 11546713 C T PRB2 Missense_Mutation p.G100E 0.15 tolerated(0.08) unknown(0) TCGA-EE-A29N-06 12 122619843 122619843 C T MLXIP Missense_Mutation p.S602F 0.25 deleterious(0.02) possibly_damaging(0.877) TCGA-EE-A29N-06 12 124317687 124317687 G A DNAH10 Nonsense_Mutation p.W1406* 0.17 TCGA-EE-A29N-06 12 125292418 125292418 G A SCARB1 Missense_Mutation p.R300C 0.19 deleterious(0.04) possibly_damaging(0.823) TCGA-EE-A29N-06 12 129360526 129360526 G A GLT1D1 Missense_Mutation p.E46K 0.23 tolerated(0.14) possibly_damaging(0.486) TCGA-EE-A29N-06 12 13724872 13724872 G A GRIN2B Silent p.P679P 0.20 TCGA-EE-A29N-06 12 16111241 16111241 C T DERA Silent p.L83L 0.31 TCGA-EE-A29N-06 12 21013995 21013995 C T SLCO1B3 Missense_Mutation p.S135L 0.16 tolerated(0.22) benign(0.107) TCGA-EE-A29N-06 12 21422553 21422553 C T SLCO1A2 Missense_Mutation p.E648K 0.17 tolerated(0.14) benign(0.009) TCGA-EE-A29N-06 12 25378647 25378647 T G KRAS Missense_Mutation p.K117N 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29N-06 12 27078704 27078707 GAAC - ASUN Frame_Shift_Del p.R221Lfs*9 0.22 TCGA-EE-A29N-06 12 41423019 41423019 C T CNTN1 Missense_Mutation p.S993L 0.12 tolerated(0.08) benign(0.307) TCGA-EE-A29N-06 12 42858523 42858523 C T PRICKLE1 Missense_Mutation p.R438Q 0.13 tolerated(0.63) benign(0.007) TCGA-EE-A29N-06 12 46244297 46244297 A T ARID2 Silent p.P797P 0.16 TCGA-EE-A29N-06 12 46244298 46244298 C T ARID2 Nonsense_Mutation p.Q798* 0.16 TCGA-EE-A29N-06 12 46245486 46245486 C T ARID2 Nonsense_Mutation p.Q1194* 0.17 TCGA-EE-A29N-06 12 51512481 51512481 G A TFCP2 Missense_Mutation p.P66L 0.22 deleterious(0) possibly_damaging(0.491) TCGA-EE-A29N-06 12 52585451 52585451 A G KRT80 Missense_Mutation p.L79P 0.17 deleterious(0) benign(0.019) TCGA-EE-A29N-06 12 52585452 52585452 G A KRT80 Silent p.L79L 0.17 TCGA-EE-A29N-06 12 53800524 53800524 G A SP1 Missense_Mutation p.D611N 0.25 deleterious(0) benign(0.012) TCGA-EE-A29N-06 12 54686865 54686865 G A NFE2 Nonsense_Mutation p.Q139* 0.18 TCGA-EE-A29N-06 12 54767880 54767880 G A ZNF385A Nonsense_Mutation p.R100* 0.22 TCGA-EE-A29N-06 12 54767881 54767881 G A ZNF385A Silent p.A99A 0.20 TCGA-EE-A29N-06 12 57396571 57396571 C T ZBTB39 Missense_Mutation p.D711N 0.24 deleterious(0) benign(0.322) TCGA-EE-A29N-06 12 57396572 57396572 C T ZBTB39 Silent p.P710P 0.25 TCGA-EE-A29N-06 12 57884380 57884380 G A MARS Silent p.E241E 0.19 TCGA-EE-A29N-06 12 57966362 57966362 G A KIF5A Splice_Site p.X524_splice 0.28 TCGA-EE-A29N-06 12 6424799 6424799 T C PLEKHG6 Missense_Mutation p.L180P 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 12 6424800 6424800 C T PLEKHG6 Silent p.L180L 0.39 TCGA-EE-A29N-06 12 65462653 65462653 T - WIF1 Frame_Shift_Del p.K143Nfs*12 0.17 TCGA-EE-A29N-06 12 670545 670545 C T B4GALNT3 Silent p.S975S 0.23 TCGA-EE-A29N-06 12 6909591 6909591 C T CD4 Silent p.S56S 0.16 TCGA-EE-A29N-06 12 7079698 7079698 C T PHB2 Silent p.Q3Q 0.22 TCGA-EE-A29N-06 12 71955582 71955582 C T LGR5 Silent p.I269I 0.18 TCGA-EE-A29N-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.22 TCGA-EE-A29N-06 12 7899916 7899916 C T CLEC4C Missense_Mutation p.R10Q 0.13 tolerated(0.28) benign(0.012) TCGA-EE-A29N-06 12 80729754 80729754 T C OTOGL Silent p.F1469F 0.18 TCGA-EE-A29N-06 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.26 tolerated(1) benign(0.007) TCGA-EE-A29N-06 13 114202694 114202694 G A TMCO3 Missense_Mutation p.G616E 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 13 24471179 24471179 C G C1QTNF9B 5'UTR 0.19 TCGA-EE-A29N-06 13 32981886 32981886 C T N4BP2L1 Missense_Mutation p.R68K 0.27 tolerated(0.57) benign(0.012) TCGA-EE-A29N-06 13 61987036 61987036 A G PCDH20 Missense_Mutation p.L399P 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 13 84454584 84454584 C T SLITRK1 Silent p.S353S 0.22 TCGA-EE-A29N-06 14 100531815 100531815 C T EVL 5'UTR 0.20 TCGA-EE-A29N-06 14 100795239 100795239 G A SLC25A47 Silent p.T168T 0.31 TCGA-EE-A29N-06 14 101526114 101526114 C T MIR154 RNA 0.25 TCGA-EE-A29N-06 14 102675407 102675407 C T WDR20 Silent p.G331G 0.14 TCGA-EE-A29N-06 14 102675408 102675408 C T WDR20 Missense_Mutation p.H332Y 0.15 deleterious(0.03) benign(0.105) TCGA-EE-A29N-06 14 102900623 102900623 C T TECPR2 Missense_Mutation p.S490F 0.13 tolerated(0.69) benign(0.055) TCGA-EE-A29N-06 14 105420656 105420656 C T AHNAK2 Missense_Mutation p.E378K 0.21 benign(0.084) TCGA-EE-A29N-06 14 106235850 106235850 C T IGHG3 Silent p.E286E 0.15 TCGA-EE-A29N-06 14 106725627 106725627 G A IGHV3-23 Missense_Mutation p.L10F 0.08 tolerated_low_confidence(0.07) benign(0.231) TCGA-EE-A29N-06 14 19377716 19377716 C T OR11H12 Silent p.F41F 0.15 TCGA-EE-A29N-06 14 19378122 19378122 C T OR11H12 Missense_Mutation p.L177F 0.10 tolerated(0.38) benign(0.05) TCGA-EE-A29N-06 14 20404268 20404268 C T OR4K1 Missense_Mutation p.S148F 0.12 deleterious(0) probably_damaging(0.962) TCGA-EE-A29N-06 14 20852269 20852269 T - TEP1 Frame_Shift_Del p.Q1154Hfs*3 0.17 TCGA-EE-A29N-06 14 20852297 20852297 C T TEP1 Missense_Mutation p.R1145Q 0.19 deleterious(0.02) possibly_damaging(0.554) TCGA-EE-A29N-06 14 23517672 23517672 G A CDH24 Silent p.F659F 0.15 TCGA-EE-A29N-06 14 24545597 24545597 G A CPNE6 Missense_Mutation p.G363R 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 14 24662319 24662319 C T TM9SF1 Missense_Mutation p.E168K 0.24 tolerated(0.59) benign(0.105) TCGA-EE-A29N-06 14 33014795 33014795 T A AKAP6 Silent p.A312A 0.20 TCGA-EE-A29N-06 14 39717188 39717188 C T MIA2 Silent p.F470F 0.22 TCGA-EE-A29N-06 14 45571737 45571737 T C PRPF39 Missense_Mutation p.F192S 0.17 deleterious(0) probably_damaging(0.915) TCGA-EE-A29N-06 14 51368616 51368616 C T ABHD12B Missense_Mutation p.P284S 0.11 tolerated(0.19) benign(0.071) TCGA-EE-A29N-06 14 70530586 70530586 G A SLC8A3 Intron 0.23 TCGA-EE-A29N-06 14 72202091 72202091 G A SIPA1L1 Silent p.Q1723Q 0.26 TCGA-EE-A29N-06 14 79454427 79454427 G A NRXN3 Missense_Mutation p.E696K 0.16 deleterious(0.01) benign(0.01) TCGA-EE-A29N-06 14 86088276 86088276 C G FLRT2 Missense_Mutation p.L140V 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 14 88789097 88789097 G A KCNK10 Missense_Mutation p.P16S 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-EE-A29N-06 14 91749693 91749693 C T CCDC88C Missense_Mutation p.R1537Q 0.20 deleterious(0.04) possibly_damaging(0.477) TCGA-EE-A29N-06 14 92471846 92471846 G A TRIP11 Missense_Mutation p.S825L 0.28 tolerated(0.77) benign(0.035) TCGA-EE-A29N-06 14 94526857 94526857 C G DDX24 Missense_Mutation p.K500N 0.19 tolerated(0.07) benign(0.016) TCGA-EE-A29N-06 14 94595931 94595931 C T IFI27L2 5'UTR 0.18 TCGA-EE-A29N-06 14 96706733 96706733 C T BDKRB2 Intron 0.15 TCGA-EE-A29N-06 14 96993806 96993806 T - PAPOLA Frame_Shift_Del p.D125Ifs*13 0.18 TCGA-EE-A29N-06 15 24923560 24923560 G A NPAP1 Missense_Mutation p.R849Q 0.19 tolerated(0.39) benign(0) TCGA-EE-A29N-06 15 26825552 26825552 G A GABRB3 Missense_Mutation p.A199V 0.41 deleterious(0) probably_damaging(0.969) TCGA-EE-A29N-06 15 27574022 27574022 G A GABRG3 Silent p.L187L 0.39 TCGA-EE-A29N-06 15 38243360 38243360 G A TMCO5A Silent p.R264R 0.52 TCGA-EE-A29N-06 15 42143348 42143348 T A SPTBN5 Nonsense_Mutation p.K3582* 0.45 TCGA-EE-A29N-06 15 43893146 43893146 G A STRC Missense_Mutation p.H1590Y 0.32 tolerated(0.1) benign(0.004) TCGA-EE-A29N-06 15 57730313 57730313 C T CGNL1 Missense_Mutation p.S39F 0.40 deleterious(0) probably_damaging(0.984) TCGA-EE-A29N-06 15 64067493 64067493 G C HERC1 Silent p.L110L 0.44 TCGA-EE-A29N-06 15 65558942 65558942 G A PARP16 Silent p.F159F 0.31 TCGA-EE-A29N-06 15 66215178 66215178 C G MEGF11 Missense_Mutation p.G602A 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29N-06 15 66215179 66215179 C T MEGF11 Missense_Mutation p.G602R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 15 77759553 77759554 AG T HMG20A Frame_Shift_Del p.E119Nfs*19 0.21 TCGA-EE-A29N-06 15 83447578 83447578 C T FSD2 Missense_Mutation p.D351N 0.61 tolerated(0.17) benign(0.009) TCGA-EE-A29N-06 15 86198668 86198668 C T AKAP13 Silent p.A1465A 0.48 TCGA-EE-A29N-06 15 88476383 88476383 C T NTRK3 Silent p.K583K 0.43 TCGA-EE-A29N-06 15 91769332 91769333 - A SV2B 5'UTR 0.40 TCGA-EE-A29N-06 15 91769336 91769336 G A SV2B 5'UTR 0.50 TCGA-EE-A29N-06 16 12142328 12142328 C T SNX29 Missense_Mutation p.T200M 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A29N-06 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.21 TCGA-EE-A29N-06 16 17294482 17294482 C T XYLT1 Missense_Mutation p.E315K 0.20 deleterious(0.01) possibly_damaging(0.594) TCGA-EE-A29N-06 16 19047023 19047023 C T TMC7 Silent p.L295L 0.17 TCGA-EE-A29N-06 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29N-06 16 2025406 2025406 C T TBL3 Missense_Mutation p.P258S 0.21 tolerated(0.69) benign(0.001) TCGA-EE-A29N-06 16 2025407 2025407 C T TBL3 Missense_Mutation p.P258L 0.19 tolerated(0.23) benign(0.028) TCGA-EE-A29N-06 16 20557753 20557753 C T ACSM2B Missense_Mutation p.G381E 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A29N-06 16 21051177 21051177 C T DNAH3 Missense_Mutation p.R1576K 0.20 tolerated(0.4) benign(0.077) TCGA-EE-A29N-06 16 21172473 21172473 C T TMEM159 5'UTR 0.26 TCGA-EE-A29N-06 16 21416240 21416240 G A NPIPB3 Silent p.L156L 0.09 TCGA-EE-A29N-06 16 2159956 2159956 G A PKD1 Missense_Mutation p.L1738F 0.18 benign(0.098) TCGA-EE-A29N-06 16 23226577 23226577 C T SCNN1G Silent p.P579P 0.19 TCGA-EE-A29N-06 16 23497377 23497377 G A GGA2 Missense_Mutation p.R253C 0.22 deleterious(0.02) benign(0.149) TCGA-EE-A29N-06 16 24196802 24196802 G A PRKCB Missense_Mutation p.E546K 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A29N-06 16 28617511 28617511 G A SULT1A1 Missense_Mutation p.S214F 0.11 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29N-06 16 29853372 29853372 G A MVP Missense_Mutation p.D525N 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A29N-06 16 30740881 30740881 C T SRCAP Nonsense_Mutation p.Q2039* 0.10 TCGA-EE-A29N-06 16 30977304 30977304 C T SETD1A Missense_Mutation p.A701V 0.15 possibly_damaging(0.739) TCGA-EE-A29N-06 16 31195273 31195273 C T FUS Silent p.S95S 0.14 TCGA-EE-A29N-06 16 31374614 31374614 C T ITGAX Silent p.A543A 0.25 TCGA-EE-A29N-06 16 3187272 3187272 G A ZNF213 5'UTR 0.24 TCGA-EE-A29N-06 16 32894010 32894010 G A RP11-989E6.3 5'Flank 0.24 TCGA-EE-A29N-06 16 48121875 48121875 C T ABCC12 Silent p.V1199V 0.26 TCGA-EE-A29N-06 16 4873863 4873863 C T GLYR1 Missense_Mutation p.G195R 0.16 tolerated(0.08) possibly_damaging(0.79) TCGA-EE-A29N-06 16 5140543 5140543 G A FAM86A Silent p.L122L 0.19 TCGA-EE-A29N-06 16 56868113 56868113 G A NUP93 Silent p.R537R 0.29 TCGA-EE-A29N-06 16 57789407 57789407 G A KATNB1 Splice_Site p.X522_splice 0.16 TCGA-EE-A29N-06 16 67763671 67763671 G A RANBP10 Silent p.S353S 0.16 TCGA-EE-A29N-06 16 70863536 70863536 C T HYDIN Silent p.E4699E 0.11 TCGA-EE-A29N-06 16 76532463 76532463 G A CNTNAP4 Splice_Site p.X673_splice 0.11 TCGA-EE-A29N-06 16 89256729 89256729 C T CDH15 Missense_Mutation p.L353F 0.35 tolerated(0.31) benign(0.014) TCGA-EE-A29N-06 16 89831401 89831401 G A FANCA Missense_Mutation p.S892F 0.11 tolerated(0.52) possibly_damaging(0.485) TCGA-EE-A29N-06 16 9857522 9857522 A G GRIN2A Silent p.D1293D 0.15 TCGA-EE-A29N-06 17 10303905 10303905 C T MYH8 Silent p.R1179R 0.16 TCGA-EE-A29N-06 17 10353807 10353807 C T MYH4 Missense_Mutation p.D1382N 0.11 deleterious(0.02) probably_damaging(1) TCGA-EE-A29N-06 17 10406151 10406151 C T MYH1 Silent p.E1005E 0.09 TCGA-EE-A29N-06 17 10442879 10442879 A G MYH2 Missense_Mutation p.V383A 0.13 tolerated(0.83) possibly_damaging(0.541) TCGA-EE-A29N-06 17 12666801 12666801 C T MYOCD Missense_Mutation p.P934L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 17 15942761 15942761 G A NCOR1 Missense_Mutation p.P2314L 0.15 probably_damaging(0.999) TCGA-EE-A29N-06 17 17697372 17697372 T A RAI1 Missense_Mutation p.F370L 0.15 tolerated(0.13) probably_damaging(0.995) TCGA-EE-A29N-06 17 19263689 19263689 C T B9D1 Missense_Mutation p.D26N 0.20 tolerated(0.11) benign(0.042) TCGA-EE-A29N-06 17 21731490 21731490 C T UBBP4 Missense_Mutation p.P189S 0.17 deleterious(0.02) benign(0.137) TCGA-EE-A29N-06 17 26694912 26694912 C T CTB-96E2.2 Missense_Mutation p.R41Q 0.24 tolerated(0.13) possibly_damaging(0.759) TCGA-EE-A29N-06 17 26726681 26726681 C T SLC46A1 Silent p.Q457Q 0.21 TCGA-EE-A29N-06 17 27210169 27210169 G A FLOT2 Silent p.N101N 0.27 TCGA-EE-A29N-06 17 27576199 27576199 C A CRYBA1 Missense_Mutation p.T24K 0.19 tolerated(0.91) benign(0.002) TCGA-EE-A29N-06 17 27818848 27818848 C T TAOK1 Missense_Mutation p.P266S 0.17 tolerated(0.06) possibly_damaging(0.78) TCGA-EE-A29N-06 17 29220806 29220806 T - ATAD5 Frame_Shift_Del p.L1646* 0.09 TCGA-EE-A29N-06 17 292987 292987 G A FAM101B Missense_Mutation p.P135S 0.35 tolerated(0.65) benign(0.011) TCGA-EE-A29N-06 17 29486063 29486063 T A NF1 Nonsense_Mutation p.Y80* 0.21 TCGA-EE-A29N-06 17 31107694 31107694 G A MYO1D Silent p.G68G 0.17 TCGA-EE-A29N-06 17 34234315 34234315 C T AC015849.16 RNA 0.27 TCGA-EE-A29N-06 17 37884091 37884091 G A ERBB2 Missense_Mutation p.G1188R 0.15 tolerated(0.07) possibly_damaging(0.873) TCGA-EE-A29N-06 17 37884092 37884092 G A ERBB2 Missense_Mutation p.G1188E 0.16 tolerated(0.13) possibly_damaging(0.873) TCGA-EE-A29N-06 17 38122528 38122528 G A GSDMA Missense_Mutation p.G77E 0.25 tolerated(0.19) possibly_damaging(0.85) TCGA-EE-A29N-06 17 38926572 38926572 G A KRT26 Missense_Mutation p.T205I 0.11 deleterious(0) possibly_damaging(0.72) TCGA-EE-A29N-06 17 40818629 40818629 A G TUBG2 Silent p.E389E 0.29 TCGA-EE-A29N-06 17 40934877 40934877 G A WNK4 Nonsense_Mutation p.W240* 0.11 TCGA-EE-A29N-06 17 40997812 40997812 G A AOC2 Missense_Mutation p.R390Q 0.23 tolerated(0.35) benign(0.009) TCGA-EE-A29N-06 17 41346489 41346489 C T NBR1 Silent p.I549I 0.27 TCGA-EE-A29N-06 17 42478429 42478429 G A GPATCH8 Missense_Mutation p.S339F 0.21 tolerated(0.08) possibly_damaging(0.898) TCGA-EE-A29N-06 17 4444801 4444801 G A MYBBP1A Missense_Mutation p.S1085F 0.10 deleterious(0.04) possibly_damaging(0.8) TCGA-EE-A29N-06 17 4648217 4648217 G A ZMYND15 Silent p.R638R 0.14 TCGA-EE-A29N-06 17 46669790 46669790 G A HOXB5 Silent p.A197A 0.29 TCGA-EE-A29N-06 17 46867348 46867348 C T TTLL6 Missense_Mutation p.E449K 0.18 deleterious(0.03) possibly_damaging(0.477) TCGA-EE-A29N-06 17 46867349 46867349 C T TTLL6 Silent p.L448L 0.18 TCGA-EE-A29N-06 17 47587860 47587860 C T NGFR Missense_Mutation p.P219S 0.20 tolerated(0.23) benign(0.02) TCGA-EE-A29N-06 17 4805689 4805689 G A C17orf107 3'UTR 0.18 TCGA-EE-A29N-06 17 48695601 48695601 C T CACNA1G Missense_Mutation p.P1775L 0.29 deleterious(0.02) benign(0.256) TCGA-EE-A29N-06 17 5461997 5461997 G A NLRP1 Silent p.F673F 0.16 TCGA-EE-A29N-06 17 54892285 54892285 C T C17orf67 Missense_Mutation p.R34K 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A29N-06 17 55335632 55335632 G A MSI2 Missense_Mutation p.G63S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29N-06 17 65341909 65341909 A G PSMD12 Missense_Mutation p.V287A 0.42 deleterious(0) benign(0.071) TCGA-EE-A29N-06 17 65889738 65889738 C T BPTF Missense_Mutation p.H770Y 0.34 benign(0.12) TCGA-EE-A29N-06 17 67257356 67257356 C T ABCA5 Missense_Mutation p.M1158I 0.29 tolerated(0.45) benign(0.003) TCGA-EE-A29N-06 17 73035134 73035134 G A ATP5H Missense_Mutation p.P127S 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29N-06 17 73144669 73144669 A C HN1 Missense_Mutation p.F52V 0.23 deleterious(0) probably_damaging(0.99) TCGA-EE-A29N-06 17 74004837 74004837 C T EVPL Nonsense_Mutation p.W1483* 0.19 TCGA-EE-A29N-06 17 74084194 74084194 C T EXOC7 Missense_Mutation p.D488N 0.32 tolerated(0.09) possibly_damaging(0.535) TCGA-EE-A29N-06 17 74899435 74899435 C T MGAT5B Missense_Mutation p.P177S 0.41 deleterious(0.04) possibly_damaging(0.831) TCGA-EE-A29N-06 17 78327434 78327434 G A RNF213 Missense_Mutation p.G3516R 0.20 benign(0.001) TCGA-EE-A29N-06 17 7951740 7951740 G A ALOX15B Missense_Mutation p.E630K 0.28 deleterious(0.01) probably_damaging(0.923) TCGA-EE-A29N-06 17 79872373 79872373 C T SIRT7 Missense_Mutation p.V205M 0.26 deleterious(0.05) benign(0.166) TCGA-EE-A29N-06 17 8170169 8170169 C T PFAS Missense_Mutation p.H974Y 0.21 deleterious(0.01) benign(0.047) TCGA-EE-A29N-06 17 8789918 8789918 G A PIK3R5 Missense_Mutation p.S637F 0.15 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29N-06 18 12325740 12325740 C T TUBB6 Missense_Mutation p.R318C 0.20 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A29N-06 18 21197718 21197718 G A ANKRD29 Missense_Mutation p.S234L 0.19 tolerated(0.22) benign(0.341) TCGA-EE-A29N-06 18 21427576 21427576 G A LAMA3 Silent p.R1360R 0.23 TCGA-EE-A29N-06 18 21501544 21501544 G A LAMA3 Silent p.R2724R 0.18 TCGA-EE-A29N-06 18 31323901 31323901 G A ASXL3 Missense_Mutation p.M1363I 0.22 benign(0.002) TCGA-EE-A29N-06 18 3534323 3534323 G A DLGAP1 Missense_Mutation p.A783V 0.30 tolerated(0.34) benign(0.057) TCGA-EE-A29N-06 18 43224024 43224024 C T SLC14A2 Missense_Mutation p.P417L 0.28 tolerated(0.45) benign(0.315) TCGA-EE-A29N-06 18 44030306 44030306 T C RNF165 Silent p.L221L 0.23 TCGA-EE-A29N-06 18 44559634 44559634 C T TCEB3B Missense_Mutation p.E668K 0.22 deleterious(0.01) benign(0.058) TCGA-EE-A29N-06 18 46383995 46383995 C T CTIF Missense_Mutation p.L524F 0.20 tolerated(0.19) probably_damaging(0.923) TCGA-EE-A29N-06 18 46570392 46570392 C T DYM 3'UTR 0.16 TCGA-EE-A29N-06 18 56963895 56963895 G A CPLX4 3'UTR 0.17 TCGA-EE-A29N-06 18 580721 580721 G A CETN1 Missense_Mutation p.E105K 0.24 deleterious(0) possibly_damaging(0.563) TCGA-EE-A29N-06 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.13 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A29N-06 18 59936121 59936121 G A KIAA1468 Silent p.G900G 0.35 TCGA-EE-A29N-06 18 67614648 67614648 G A CD226 5'UTR 0.23 TCGA-EE-A29N-06 18 67993556 67993556 G A SOCS6 3'UTR 0.21 TCGA-EE-A29N-06 18 72250892 72250892 C T CNDP1 Missense_Mutation p.P469S 0.12 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A29N-06 18 8784163 8784163 G A SOGA2 Silent p.K351K 0.13 TCGA-EE-A29N-06 18 9549287 9549287 A T PPP4R1 Missense_Mutation p.L866H 0.22 deleterious(0) probably_damaging(0.95) TCGA-EE-A29N-06 18 9549288 9549288 G A PPP4R1 Missense_Mutation p.L866F 0.22 tolerated(0.08) benign(0.292) TCGA-EE-A29N-06 19 10690440 10690440 G A AP1M2 Silent p.I256I 0.20 TCGA-EE-A29N-06 19 11031388 11031388 C T CARM1 Missense_Mutation p.S463F 0.15 deleterious(0) benign(0.407) TCGA-EE-A29N-06 19 11216163 11216163 G A LDLR Missense_Mutation p.S194N 0.21 tolerated(0.5) benign(0) TCGA-EE-A29N-06 19 11224000 11224000 G A LDLR Silent p.K411K 0.18 TCGA-EE-A29N-06 19 14150410 14150410 C T IL27RA Silent p.L103L 0.15 TCGA-EE-A29N-06 19 14785576 14785576 C T EMR3 Missense_Mutation p.G3R 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29N-06 19 15053071 15053071 C T OR7C2 Silent p.V257V 0.20 TCGA-EE-A29N-06 19 16045035 16045035 C T CYP4F11 Missense_Mutation p.G62R 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A29N-06 19 16860484 16860484 G A NWD1 Missense_Mutation p.G344D 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 19 16910870 16910870 T C NWD1 Silent p.F1211F 0.17 TCGA-EE-A29N-06 19 17756850 17756850 G A UNC13A Silent p.V705V 0.26 TCGA-EE-A29N-06 19 18273852 18273852 C T PIK3R2 Silent p.F395F 0.17 TCGA-EE-A29N-06 19 19369409 19369409 C T HAPLN4 Missense_Mutation p.G247E 0.21 tolerated(0.07) possibly_damaging(0.529) TCGA-EE-A29N-06 19 19625778 19625778 G A TSSK6 Silent p.T153T 0.26 TCGA-EE-A29N-06 19 19655235 19655235 C T CILP2 Silent p.F627F 0.19 TCGA-EE-A29N-06 19 19766199 19766199 G A ATP13A1 Missense_Mutation p.S487L 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A29N-06 19 19825193 19825193 G A ZNF14 Missense_Mutation p.T36I 0.20 tolerated(0.06) benign(0.113) TCGA-EE-A29N-06 19 21712511 21712511 C T ZNF429 Nonsense_Mutation p.Q19* 0.16 TCGA-EE-A29N-06 19 2933775 2933775 G A ZNF77 Silent p.S450S 0.14 TCGA-EE-A29N-06 19 3449011 3449011 G A NFIC Splice_Site p.X320_splice 0.20 TCGA-EE-A29N-06 19 35850642 35850642 C T FFAR3 Nonsense_Mutation p.Q284* 0.16 TCGA-EE-A29N-06 19 36271932 36271932 G A ARHGAP33 Missense_Mutation p.G314S 0.23 deleterious_low_confidence(0.03) probably_damaging(0.916) TCGA-EE-A29N-06 19 38572699 38572699 C G SIPA1L3 Missense_Mutation p.P165R 0.21 tolerated(0.42) benign(0.217) TCGA-EE-A29N-06 19 38976788 38976788 G A RYR1 Silent p.G1831G 0.20 TCGA-EE-A29N-06 19 38981316 38981316 C T RYR1 Missense_Mutation p.P2024L 0.18 benign(0.23) TCGA-EE-A29N-06 19 39398053 39398053 C T NFKBIB Silent p.G241G 0.09 TCGA-EE-A29N-06 19 39398054 39398054 C T NFKBIB Missense_Mutation p.R242W 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 19 39799143 39799143 G C LRFN1 Missense_Mutation p.D482E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 19 42563509 42563509 G A GRIK5 Missense_Mutation p.L227F 0.15 deleterious(0.03) possibly_damaging(0.848) TCGA-EE-A29N-06 19 42847656 42847656 A T MEGF8 Missense_Mutation p.Y514F 0.22 tolerated(0.71) benign(0.017) TCGA-EE-A29N-06 19 42875635 42875635 G A MEGF8 Splice_Site p.X2356_splice 0.14 TCGA-EE-A29N-06 19 43262407 43262407 G A PSG8 Silent p.S152S 0.18 TCGA-EE-A29N-06 19 44254780 44254780 C T SMG9 Silent p.E38E 0.18 TCGA-EE-A29N-06 19 44515263 44515263 C T ZNF230 Missense_Mutation p.H358Y 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29N-06 19 4513458 4513458 C T PLIN4 Missense_Mutation p.V158M 0.20 tolerated(0.1) possibly_damaging(0.53) TCGA-EE-A29N-06 19 4513459 4513459 C T PLIN4 Silent p.T157T 0.20 TCGA-EE-A29N-06 19 45998060 45998060 C T RTN2 Missense_Mutation p.E95K 0.15 deleterious_low_confidence(0.01) benign(0.077) TCGA-EE-A29N-06 19 46307638 46307638 C T RSPH6A Missense_Mutation p.E509K 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A29N-06 19 47969382 47969382 G A SLC8A2 Silent p.F93F 0.20 TCGA-EE-A29N-06 19 48342687 48342687 G A CRX Silent p.A121A 0.21 TCGA-EE-A29N-06 19 48342688 48342688 G C CRX Missense_Mutation p.G122R 0.21 tolerated(0.09) benign(0.102) TCGA-EE-A29N-06 19 48639036 48639036 T A LIG1 Missense_Mutation p.E475V 0.21 tolerated(0.1) benign(0.021) TCGA-EE-A29N-06 19 50098425 50098425 C T PRR12 Missense_Mutation p.P278L 0.14 possibly_damaging(0.851) TCGA-EE-A29N-06 19 50794224 50794224 A G MYH14 Silent p.G1682G 0.27 TCGA-EE-A29N-06 19 50926861 50926861 G A SPIB Splice_Site p.X114_splice 0.14 TCGA-EE-A29N-06 19 53302851 53302852 AC - ZNF28 3'UTR 0.10 TCGA-EE-A29N-06 19 53302935 53302936 AC - ZNF28 3'UTR 0.11 TCGA-EE-A29N-06 19 53303297 53303297 G A ZNF28 Missense_Mutation p.H601Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A29N-06 19 54072571 54072571 G A ZNF331 5'UTR 0.16 TCGA-EE-A29N-06 19 54080951 54080951 C G ZNF331 Silent p.G379G 0.09 TCGA-EE-A29N-06 19 54185498 54185498 G A MIR520F RNA 0.17 TCGA-EE-A29N-06 19 55106787 55106787 C T LILRA1 Missense_Mutation p.S194L 0.23 deleterious(0.02) benign(0.039) TCGA-EE-A29N-06 19 55143678 55143678 C T LILRB1 Silent p.L217L 0.20 TCGA-EE-A29N-06 19 55179188 55179188 G A LILRB4 Missense_Mutation p.E382K 0.13 tolerated(0.2) benign(0.176) TCGA-EE-A29N-06 19 55224690 55224690 G A LILRP2 RNA 0.25 TCGA-EE-A29N-06 19 55247300 55247300 G A KIR3DL3 Missense_Mutation p.M356I 0.15 tolerated(0.09) benign(0.009) TCGA-EE-A29N-06 19 55331401 55331401 G A KIR3DL1 Missense_Mutation p.G197S 0.18 tolerated(0.08) probably_damaging(0.955) TCGA-EE-A29N-06 19 56424493 56424493 C T NLRP13 Silent p.T230T 0.22 TCGA-EE-A29N-06 19 57640915 57640915 G A USP29 Missense_Mutation p.G291E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 19 57665748 57665748 G A DUXA 3'UTR 0.22 TCGA-EE-A29N-06 19 6707488 6707488 C T C3 Missense_Mutation p.R679Q 0.13 deleterious(0.01) possibly_damaging(0.721) TCGA-EE-A29N-06 19 8151976 8151976 C T FBN3 Missense_Mutation p.G2247R 0.23 tolerated(0.09) benign(0.309) TCGA-EE-A29N-06 19 831868 831868 G A AZU1 Silent p.G249G 0.26 TCGA-EE-A29N-06 19 8807915 8807915 G A ACTL9 Silent p.S379S 0.35 TCGA-EE-A29N-06 19 9061891 9061891 A C MUC16 Missense_Mutation p.F8519V 0.15 unknown(0) TCGA-EE-A29N-06 19 9065698 9065698 C T MUC16 Missense_Mutation p.E7250K 0.24 unknown(0) TCGA-EE-A29N-06 19 9067464 9067464 C T MUC16 Missense_Mutation p.G6661E 0.19 unknown(0) TCGA-EE-A29N-06 19 9084946 9084946 G A MUC16 Missense_Mutation p.P2290L 0.30 unknown(0) TCGA-EE-A29N-06 19 9090790 9090790 C T MUC16 Missense_Mutation p.R342K 0.18 unknown(0) TCGA-EE-A29N-06 1 100346996 100346996 T A AGL Missense_Mutation p.F717Y 0.14 tolerated(0.09) benign(0.02) TCGA-EE-A29N-06 1 111860660 111860660 G A CHIA Missense_Mutation p.G220S 0.22 tolerated(0.52) benign(0.123) TCGA-EE-A29N-06 1 113161675 113161675 G A ST7L Missense_Mutation p.P21S 0.17 tolerated_low_confidence(0.78) benign(0.009) TCGA-EE-A29N-06 1 118166458 118166458 G A FAM46C Missense_Mutation p.G323E 0.12 deleterious(0.02) probably_damaging(1) TCGA-EE-A29N-06 1 145416393 145416393 C T HFE2 Silent p.A246A 0.15 TCGA-EE-A29N-06 1 150727493 150727493 G A CTSS Missense_Mutation p.T128I 0.16 deleterious(0) probably_damaging(0.993) TCGA-EE-A29N-06 1 152278561 152278561 T A FLG Missense_Mutation p.Q2934L 0.23 benign(0.063) TCGA-EE-A29N-06 1 153732018 153732018 C T INTS3 Missense_Mutation p.S389F 0.14 deleterious(0) possibly_damaging(0.839) TCGA-EE-A29N-06 1 154018830 154018830 C T NUP210L Missense_Mutation p.E1167K 0.28 deleterious(0.01) possibly_damaging(0.698) TCGA-EE-A29N-06 1 154315295 154315295 C T ATP8B2 Silent p.S470S 0.20 TCGA-EE-A29N-06 1 154931385 154931386 CT - PYGO2 Frame_Shift_Del p.S364Rfs*8 0.15 TCGA-EE-A29N-06 1 154987342 154987342 G A ZBTB7B Missense_Mutation p.G103E 0.19 deleterious(0) probably_damaging(0.969) TCGA-EE-A29N-06 1 155005658 155005658 G A DCST2 Silent p.T117T 0.22 TCGA-EE-A29N-06 1 156507026 156507026 G A IQGAP3 Silent p.L1123L 0.11 TCGA-EE-A29N-06 1 158577107 158577107 G A OR10Z1 Silent p.R293R 0.17 TCGA-EE-A29N-06 1 158811970 158811970 T A MNDA Silent p.L9L 0.20 TCGA-EE-A29N-06 1 160793254 160793254 G A LY9 Splice_Site p.X500_splice 0.27 TCGA-EE-A29N-06 1 161163612 161163612 G A ADAMTS4 Missense_Mutation p.P518L 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29N-06 1 169842850 169842850 G A SCYL3 Missense_Mutation p.P170L 0.13 deleterious(0) probably_damaging(0.995) TCGA-EE-A29N-06 1 171073058 171073058 G A FMO3 Missense_Mutation p.E89K 0.10 deleterious(0.04) benign(0.113) TCGA-EE-A29N-06 1 171557584 171557584 C T PRRC2C Silent p.F2711F 0.20 TCGA-EE-A29N-06 1 184764971 184764971 G A FAM129A Missense_Mutation p.P643S 0.17 tolerated(0.14) benign(0.023) TCGA-EE-A29N-06 1 184764972 184764972 G A FAM129A Silent p.L642L 0.17 TCGA-EE-A29N-06 1 18807904 18807904 G A KLHDC7A Silent p.Q143Q 0.29 TCGA-EE-A29N-06 1 190067643 190067643 G A BRINP3 Silent p.D602D 0.17 TCGA-EE-A29N-06 1 202163294 202163294 C T LGR6 Silent p.A59A 0.33 TCGA-EE-A29N-06 1 203317363 203317363 G A FMOD Silent p.L12L 0.10 TCGA-EE-A29N-06 1 205492424 205492424 G A CDK18 Silent p.E43E 0.18 TCGA-EE-A29N-06 1 206231184 206231184 G A AVPR1B 3'UTR 0.24 TCGA-EE-A29N-06 1 213009267 213009267 C T C1orf227 Nonsense_Mutation p.W75* 0.13 TCGA-EE-A29N-06 1 215298065 215298065 C T KCNK2 Silent p.F149F 0.13 TCGA-EE-A29N-06 1 215824121 215824121 C T USH2A Missense_Mutation p.G4719E 0.18 probably_damaging(1) TCGA-EE-A29N-06 1 216073545 216073545 G A USH2A Missense_Mutation p.P2489L 0.17 probably_damaging(0.968) TCGA-EE-A29N-06 1 216348630 216348630 G A USH2A Missense_Mutation p.P1531S 0.16 possibly_damaging(0.887) TCGA-EE-A29N-06 1 220316323 220316323 T A IARS2 Silent p.T866T 0.17 TCGA-EE-A29N-06 1 223943208 223943208 C T CAPN2 Silent p.L388L 0.37 TCGA-EE-A29N-06 1 223984229 223984229 G A TP53BP2 Missense_Mutation p.S671F 0.09 deleterious(0.01) benign(0.265) TCGA-EE-A29N-06 1 226128856 226128856 G A LEFTY2 5'UTR 0.32 TCGA-EE-A29N-06 1 226353593 226353593 A G ACBD3 Missense_Mutation p.V132A 0.09 deleterious(0) benign(0.418) TCGA-EE-A29N-06 1 22915620 22915620 C T EPHA8 Silent p.I412I 0.22 TCGA-EE-A29N-06 1 229772137 229772137 C G URB2 Missense_Mutation p.P593A 0.12 tolerated(0.3) benign(0.03) TCGA-EE-A29N-06 1 229772138 229772138 C T URB2 Missense_Mutation p.P593L 0.12 tolerated(0.1) benign(0.276) TCGA-EE-A29N-06 1 23648120 23648120 C T HNRNPR Missense_Mutation p.G238R 0.21 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A29N-06 1 24120985 24120985 C T LYPLA2 Silent p.P180P 0.20 TCGA-EE-A29N-06 1 241912906 241912906 G A WDR64 Missense_Mutation p.G541E 0.26 tolerated(0.22) probably_damaging(0.998) TCGA-EE-A29N-06 1 24447491 24447491 G A IL22RA1 Missense_Mutation p.S510F 0.13 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29N-06 1 247655180 247655180 C T OR2W5 RNA 0.23 TCGA-EE-A29N-06 1 34663168 34663168 G A C1orf94 Silent p.G221G 0.25 TCGA-EE-A29N-06 1 36030854 36030854 G A NCDN Missense_Mutation p.G594R 0.18 tolerated(0.55) benign(0.374) TCGA-EE-A29N-06 1 36030855 36030855 G A NCDN Missense_Mutation p.G594E 0.18 tolerated(1) benign(0.01) TCGA-EE-A29N-06 1 36603448 36603448 G A TRAPPC3 Silent p.S124S 0.24 TCGA-EE-A29N-06 1 36788614 36788614 C T EVA1B Missense_Mutation p.E9K 0.10 tolerated(0.36) benign(0.423) TCGA-EE-A29N-06 1 42905608 42905608 G A ZMYND12 Silent p.H171H 0.22 TCGA-EE-A29N-06 1 44395950 44395950 C T ST3GAL3 3'UTR 0.20 TCGA-EE-A29N-06 1 53153359 53153359 C G COA7 3'UTR 0.17 TCGA-EE-A29N-06 1 54665885 54665885 C T MRPL37 5'UTR 0.17 TCGA-EE-A29N-06 1 57383453 57383453 A G C8A 3'UTR 0.24 TCGA-EE-A29N-06 1 57489283 57489283 G A DAB1 Silent p.I272I 0.25 TCGA-EE-A29N-06 1 6534523 6534523 G A PLEKHG5 Missense_Mutation p.L222F 0.18 deleterious(0.03) benign(0.027) TCGA-EE-A29N-06 1 68905297 68905297 C T RPE65 Silent p.E224E 0.21 TCGA-EE-A29N-06 1 74648261 74648261 G A LRRIQ3 Silent p.N178N 0.15 TCGA-EE-A29N-06 1 75677163 75677163 G A SLC44A5 Silent p.F679F 0.27 TCGA-EE-A29N-06 1 76779672 76779672 G A ST6GALNAC3 Silent p.V67V 0.19 TCGA-EE-A29N-06 1 79357344 79357344 G A ELTD1 Silent p.F625F 0.09 TCGA-EE-A29N-06 1 861352 861352 C T SAMD11 Missense_Mutation p.P11S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 1 861353 861353 C T SAMD11 Missense_Mutation p.P11L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 1 89448463 89448463 G A RBMXL1 Silent p.P349P 0.13 TCGA-EE-A29N-06 1 89448464 89448464 G A RBMXL1 Missense_Mutation p.P349L 0.13 tolerated(0.08) possibly_damaging(0.536) TCGA-EE-A29N-06 1 89834181 89834181 A G GBP6 Missense_Mutation p.N24S 0.18 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A29N-06 1 9078385 9078385 C T SLC2A7 Silent p.K162K 0.20 TCGA-EE-A29N-06 1 94057855 94057855 G A BCAR3 Silent p.S151S 0.22 TCGA-EE-A29N-06 20 1616214 1616214 G A SIRPG Silent p.P260P 0.27 TCGA-EE-A29N-06 20 17934738 17934738 G A SNX5 Silent p.P97P 0.21 TCGA-EE-A29N-06 20 18167944 18167944 G A CSRP2BP Silent p.K730K 0.18 TCGA-EE-A29N-06 20 20140015 20140015 G A C20orf26 Missense_Mutation p.G318E 0.19 tolerated(0.97) benign(0.001) TCGA-EE-A29N-06 20 26094577 26094577 C T NCOR1P1 RNA 0.23 TCGA-EE-A29N-06 20 30408341 30408341 C T MYLK2 Silent p.I155I 0.09 TCGA-EE-A29N-06 20 31021578 31021578 C T ASXL1 Missense_Mutation p.S526F 0.12 tolerated(0.11) probably_damaging(0.997) TCGA-EE-A29N-06 20 31021579 31021579 C T ASXL1 Silent p.S526S 0.13 TCGA-EE-A29N-06 20 31606442 31606442 G A BPIFB2 Splice_Site p.X224_splice 0.16 TCGA-EE-A29N-06 20 3209531 3209531 G A SLC4A11 Silent p.A758A 0.11 TCGA-EE-A29N-06 20 3209532 3209532 G A SLC4A11 Missense_Mutation p.A758V 0.11 deleterious(0.01) possibly_damaging(0.844) TCGA-EE-A29N-06 20 33533886 33533886 G A GSS Missense_Mutation p.P49S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 20 36640040 36640040 C T TTI1 Missense_Mutation p.D727N 0.26 tolerated(0.07) possibly_damaging(0.749) TCGA-EE-A29N-06 20 40120436 40120436 C T CHD6 Nonsense_Mutation p.W446* 0.15 TCGA-EE-A29N-06 20 40120437 40120437 C T CHD6 Nonsense_Mutation p.W446* 0.15 TCGA-EE-A29N-06 20 44523489 44523489 G A CTSA Silent p.Q317Q 0.21 TCGA-EE-A29N-06 20 44523490 44523490 G A CTSA Missense_Mutation p.D318N 0.21 tolerated(0.15) benign(0.023) TCGA-EE-A29N-06 20 44671894 44671894 C T SLC12A5 Missense_Mutation p.P413L 0.21 tolerated(0.06) possibly_damaging(0.686) TCGA-EE-A29N-06 20 45633718 45633718 C T EYA2 Missense_Mutation p.S98F 0.19 deleterious(0.01) possibly_damaging(0.809) TCGA-EE-A29N-06 20 45850049 45850049 C T ZMYND8 Silent p.S1065S 0.31 TCGA-EE-A29N-06 20 470460 470460 C T CSNK2A1 Silent p.K229K 0.16 TCGA-EE-A29N-06 20 4713247 4713247 G A PRNT Missense_Mutation p.H26Y 0.17 deleterious_low_confidence(0) benign(0.013) TCGA-EE-A29N-06 20 47634049 47634049 C T ARFGEF2 Missense_Mutation p.P1491S 0.18 deleterious(0.02) benign(0.103) TCGA-EE-A29N-06 20 47989668 47989668 C T KCNB1 Missense_Mutation p.R810K 0.21 tolerated_low_confidence(0.35) benign(0.005) TCGA-EE-A29N-06 20 50407792 50407792 G A SALL4 Silent p.F410F 0.21 TCGA-EE-A29N-06 20 54575901 54575901 G A CBLN4 Silent p.I98I 0.20 TCGA-EE-A29N-06 20 55033749 55033749 G A CASS4 Silent p.A769A 0.25 TCGA-EE-A29N-06 20 55033750 55033750 G A CASS4 Missense_Mutation p.E770K 0.25 tolerated(0.08) benign(0.3) TCGA-EE-A29N-06 20 57768463 57768463 G A ZNF831 Missense_Mutation p.E797K 0.17 tolerated(0.05) benign(0.03) TCGA-EE-A29N-06 20 5953805 5953805 T C MCM8 Missense_Mutation p.V453A 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 21 16340074 16340074 A G NRIP1 Missense_Mutation p.V147A 0.19 deleterious(0) probably_damaging(0.993) TCGA-EE-A29N-06 21 34975741 34975741 C T CRYZL1 Missense_Mutation p.G145E 0.16 deleterious(0.01) benign(0.102) TCGA-EE-A29N-06 21 38103419 38103419 G A SIM2 Missense_Mutation p.D273N 0.26 deleterious(0) probably_damaging(0.993) TCGA-EE-A29N-06 21 40794924 40794924 T C LCA5L Missense_Mutation p.D272G 0.16 deleterious(0) benign(0.085) TCGA-EE-A29N-06 21 41424008 41424008 C T DSCAM Missense_Mutation p.D1688N 0.19 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A29N-06 21 42615331 42615331 A G BACE2 Missense_Mutation p.Y259C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A29N-06 21 43321859 43321859 C T C2CD2 Splice_Site p.X478_splice 0.19 TCGA-EE-A29N-06 21 43547937 43547937 A G UMODL1 Missense_Mutation p.K1357R 0.12 tolerated(0.91) benign(0.133) TCGA-EE-A29N-06 21 45400909 45400909 C T AGPAT3 Missense_Mutation p.P295S 0.17 tolerated(0.1) probably_damaging(0.916) TCGA-EE-A29N-06 21 45666423 45666423 C T DNMT3L Missense_Mutation p.E341K 0.19 tolerated(0.64) benign(0.006) TCGA-EE-A29N-06 21 46047215 46047215 C T KRTAP10-9 Silent p.L43L 0.17 TCGA-EE-A29N-06 21 46900753 46900753 C T COL18A1 Missense_Mutation p.P711L 0.23 possibly_damaging(0.851) TCGA-EE-A29N-06 22 17072523 17072523 C T CCT8L2 Silent p.L306L 0.15 TCGA-EE-A29N-06 22 22664754 22664755 CT - BMS1P20 RNA 0.17 TCGA-EE-A29N-06 22 25115717 25115717 G C PIWIL3 Missense_Mutation p.P844A 0.25 tolerated(0.12) benign(0.085) TCGA-EE-A29N-06 22 26706742 26706742 C T SEZ6L Missense_Mutation p.R541C 0.11 tolerated(0.17) benign(0.262) TCGA-EE-A29N-06 22 26707732 26707732 A G SEZ6L Splice_Site p.X561_splice 0.35 TCGA-EE-A29N-06 22 26860503 26860503 C T HPS4 Missense_Mutation p.E365K 0.13 tolerated(1) benign(0.024) TCGA-EE-A29N-06 22 28193708 28193708 C T MN1 Missense_Mutation p.G942R 0.25 probably_damaging(1) TCGA-EE-A29N-06 22 29957588 29957588 C T NIPSNAP1 Silent p.R162R 0.32 TCGA-EE-A29N-06 22 30414048 30414048 C T MTMR3 Missense_Mutation p.P603S 0.29 tolerated(0.83) benign(0.001) TCGA-EE-A29N-06 22 31286814 31286814 G A OSBP2 Missense_Mutation p.E575K 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A29N-06 22 36537945 36537945 C T APOL3 Missense_Mutation p.R171H 0.28 tolerated(0.55) benign(0.042) TCGA-EE-A29N-06 22 37533707 37533707 C T IL2RB Missense_Mutation p.E153K 0.15 tolerated(0.86) benign(0) TCGA-EE-A29N-06 22 37771307 37771307 C T ELFN2 Missense_Mutation p.E90K 0.29 tolerated(0.12) probably_damaging(0.993) TCGA-EE-A29N-06 22 38041403 38041403 C T SH3BP1 Silent p.F270F 0.12 TCGA-EE-A29N-06 22 38541618 38541618 G A PLA2G6 Silent p.F84F 0.16 TCGA-EE-A29N-06 22 41190565 41190565 G A SLC25A17 Silent p.S45S 0.31 TCGA-EE-A29N-06 22 43231471 43231471 G A ARFGAP3 Missense_Mutation p.S97F 0.24 deleterious(0) possibly_damaging(0.546) TCGA-EE-A29N-06 22 44221993 44221993 C T SULT4A1 Missense_Mutation p.G248E 0.17 deleterious(0) probably_damaging(0.994) TCGA-EE-A29N-06 22 50720717 50720717 C T PLXNB2 Missense_Mutation p.G1005S 0.20 deleterious(0) probably_damaging(0.982) TCGA-EE-A29N-06 22 50720718 50720718 C T PLXNB2 Silent p.T1004T 0.22 TCGA-EE-A29N-06 2 102793335 102793335 C T IL1R1 3'UTR 0.21 TCGA-EE-A29N-06 2 113675280 113675280 G A IL37 Missense_Mutation p.G112R 0.22 deleterious(0) possibly_damaging(0.828) TCGA-EE-A29N-06 2 11706653 11706653 G A GREB1 Missense_Mutation p.E109K 0.23 deleterious(0.04) possibly_damaging(0.563) TCGA-EE-A29N-06 2 11772080 11772080 C T GREB1 Missense_Mutation p.R1553C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 2 128707888 128707888 G A SAP130 Silent p.A865A 0.19 TCGA-EE-A29N-06 2 131904263 131904263 G T PLEKHB2 Missense_Mutation p.D204Y 0.19 deleterious(0) possibly_damaging(0.886) TCGA-EE-A29N-06 2 132237794 132237794 G A TUBA3D Silent p.Q176Q 0.17 TCGA-EE-A29N-06 2 132237795 132237795 G A TUBA3D Missense_Mutation p.V177I 0.17 tolerated_low_confidence(0.37) benign(0.004) TCGA-EE-A29N-06 2 135966509 135966509 G A ZRANB3 Silent p.D845D 0.14 TCGA-EE-A29N-06 2 138421083 138421083 G A THSD7B Missense_Mutation p.R1533K 0.18 tolerated(1) unknown(0) TCGA-EE-A29N-06 2 152544142 152544142 C T NEB Missense_Mutation p.D841N 0.33 probably_damaging(0.956) TCGA-EE-A29N-06 2 153399278 153399278 C T FMNL2 Missense_Mutation p.P76L 0.22 probably_damaging(0.94) TCGA-EE-A29N-06 2 159530490 159530490 G A PKP4 Silent p.Q1035Q 0.20 TCGA-EE-A29N-06 2 160285724 160285724 G A BAZ2B Missense_Mutation p.P748S 0.09 probably_damaging(1) TCGA-EE-A29N-06 2 163250955 163250955 C T KCNH7 Missense_Mutation p.G885E 0.17 tolerated(0.46) benign(0.002) TCGA-EE-A29N-06 2 16740826 16740826 C G FAM49A Missense_Mutation p.E247Q 0.21 tolerated(0.07) benign(0.394) TCGA-EE-A29N-06 2 174131184 174131184 C T MLTK Silent p.S703S 0.19 TCGA-EE-A29N-06 2 176996323 176996323 G A HOXD8 Missense_Mutation p.E286K 0.24 deleterious_low_confidence(0.04) benign(0.124) TCGA-EE-A29N-06 2 179449219 179449219 C T TTN Missense_Mutation p.G21687R 0.18 TCGA-EE-A29N-06 2 179604270 179604270 C T TTN Missense_Mutation p.E4564K 0.16 TCGA-EE-A29N-06 2 179612512 179612512 G A TTN Intron 0.19 TCGA-EE-A29N-06 2 179664334 179664334 G A TTN Missense_Mutation p.S265F 0.15 TCGA-EE-A29N-06 2 183960449 183960449 C T DUSP19 3'UTR 0.31 TCGA-EE-A29N-06 2 186673305 186673305 C T FSIP2 Silent p.S6513S 0.25 TCGA-EE-A29N-06 2 190728858 190728858 C T PMS1 Missense_Mutation p.P749L 0.17 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29N-06 2 196746545 196746545 C T DNAH7 Missense_Mutation p.G1979R 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A29N-06 2 207172738 207172738 G A ZDBF2 Silent p.L1162L 0.17 TCGA-EE-A29N-06 2 213291042 213291042 G A ERBB4 Intron 0.31 TCGA-EE-A29N-06 2 214878736 214878736 C T SPAG16 Missense_Mutation p.P488S 0.18 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A29N-06 2 216810397 216810397 G A MREG Missense_Mutation p.S136F 0.15 tolerated(0.2) benign(0.028) TCGA-EE-A29N-06 2 219874736 219874736 G A CCDC108 Silent p.L1460L 0.29 TCGA-EE-A29N-06 2 220480795 220480795 C T STK11IP Silent p.L1060L 0.20 TCGA-EE-A29N-06 2 223464667 223464667 T A FARSB Missense_Mutation p.Y533F 0.15 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A29N-06 2 227915811 227915811 C T COL4A4 Missense_Mutation p.G1011E 0.18 unknown(0) TCGA-EE-A29N-06 2 228750134 228750134 T A DAW1 Silent p.G36G 0.20 TCGA-EE-A29N-06 2 228750135 228750135 C T DAW1 Missense_Mutation p.P37S 0.22 tolerated(0.22) benign(0.012) TCGA-EE-A29N-06 2 228750136 228750136 C T DAW1 Missense_Mutation p.P37L 0.23 deleterious(0.04) benign(0.02) TCGA-EE-A29N-06 2 232146835 232146835 G A ARMC9 Missense_Mutation p.A539T 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 2 232373842 232373842 C A LINC00471 RNA 0.20 TCGA-EE-A29N-06 2 233001424 233001424 C T DIS3L2 Silent p.A315A 0.23 TCGA-EE-A29N-06 2 233393332 233393332 C T CHRND Missense_Mutation p.P159S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 2 241737089 241737089 G A KIF1A Silent p.I27I 0.16 TCGA-EE-A29N-06 2 24300515 24300515 C T TP53I3 Silent p.Q311Q 0.21 TCGA-EE-A29N-06 2 27121457 27121457 C T DPYSL5 Silent p.I30I 0.12 TCGA-EE-A29N-06 2 27800226 27800226 G A C2orf16 Missense_Mutation p.E263K 0.18 tolerated(0.16) possibly_damaging(0.699) TCGA-EE-A29N-06 2 33589288 33589288 G A LTBP1 Missense_Mutation p.D1469N 0.15 tolerated(0.26) possibly_damaging(0.776) TCGA-EE-A29N-06 2 38179116 38179116 C A RMDN2 Missense_Mutation p.P253H 0.19 deleterious(0.01) benign(0.027) TCGA-EE-A29N-06 2 44065123 44065123 G A ABCG5 Intron 0.25 TCGA-EE-A29N-06 2 47177586 47177586 C T TTC7A Missense_Mutation p.P90L 0.24 deleterious(0) possibly_damaging(0.805) TCGA-EE-A29N-06 2 54081434 54081434 G A GPR75 Missense_Mutation p.R154C 0.20 tolerated(0.05) benign(0.051) TCGA-EE-A29N-06 2 54146315 54146315 G A PSME4 Missense_Mutation p.P830L 0.15 tolerated(0.18) benign(0.006) TCGA-EE-A29N-06 2 60687571 60687571 G A BCL11A Nonsense_Mutation p.R826* 0.21 TCGA-EE-A29N-06 2 68872957 68872957 G A PROKR1 Missense_Mutation p.E2K 0.18 tolerated_low_confidence(0.06) benign(0.129) TCGA-EE-A29N-06 2 68873115 68873115 T C PROKR1 Silent p.N54N 0.18 TCGA-EE-A29N-06 2 72359359 72359359 G A CYP26B1 Silent p.V512V 0.20 TCGA-EE-A29N-06 2 76975869 76975869 G A LRRTM4 Silent p.I575I 0.19 TCGA-EE-A29N-06 2 79348794 79348794 G A REG1A Nonsense_Mutation p.W57* 0.24 TCGA-EE-A29N-06 2 79348795 79348795 G A REG1A Missense_Mutation p.V58I 0.24 tolerated(0.49) benign(0) TCGA-EE-A29N-06 2 84518272 84518272 C T FUNDC2P2 RNA 0.16 TCGA-EE-A29N-06 2 85577962 85577962 G A RETSAT Missense_Mutation p.L180F 0.18 deleterious(0) probably_damaging(0.932) TCGA-EE-A29N-06 2 86352579 86352579 A G PTCD3 Missense_Mutation p.H269R 0.12 deleterious(0) benign(0.264) TCGA-EE-A29N-06 2 86693920 86693920 C T KDM3A Missense_Mutation p.A478V 0.20 tolerated(0.57) benign(0) TCGA-EE-A29N-06 2 88751516 88751516 G A FOXI3 RNA 0.44 TCGA-EE-A29N-06 2 89036100 89036100 C T RPIA Silent p.I215I 0.11 TCGA-EE-A29N-06 2 89278128 89278128 G A IGKV3-7 Silent p.I69I 0.29 TCGA-EE-A29N-06 2 90044132 90044132 C T IGKV2D-24 Missense_Mutation p.S18F 0.15 deleterious(0.03) benign(0.3) TCGA-EE-A29N-06 2 90108822 90108822 T A IGKV6D-41 Silent p.A29A 0.23 TCGA-EE-A29N-06 2 90154148 90154148 C T IGKV3D-15 Missense_Mutation p.P79S 0.21 deleterious(0.04) benign(0.174) TCGA-EE-A29N-06 2 96944041 96944041 G A SNRNP200 Silent p.I1848I 0.22 TCGA-EE-A29N-06 2 96992828 96992828 C T ITPRIPL1 Silent p.V161V 0.21 TCGA-EE-A29N-06 2 99900718 99900718 C T LYG1 3'Flank 0.29 TCGA-EE-A29N-06 3 102189258 102189258 G A ZPLD1 Silent p.R334R 0.16 TCGA-EE-A29N-06 3 107096900 107096900 G A CCDC54 Missense_Mutation p.E156K 0.21 tolerated(0.06) possibly_damaging(0.891) TCGA-EE-A29N-06 3 108110668 108110668 G A MYH15 Missense_Mutation p.A1810V 0.19 deleterious(0.01) benign(0.124) TCGA-EE-A29N-06 3 108363472 108363472 G A DZIP3 Missense_Mutation p.D535N 0.19 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-EE-A29N-06 3 108773659 108773659 C T MORC1 Missense_Mutation p.E416K 0.16 deleterious(0.02) possibly_damaging(0.451) TCGA-EE-A29N-06 3 111719727 111719727 C T TAGLN3 Silent p.L97L 0.15 TCGA-EE-A29N-06 3 115439675 115439675 C T GAP43 Silent p.A257A 0.11 TCGA-EE-A29N-06 3 115439676 115439676 C T GAP43 Missense_Mutation p.R258W 0.11 deleterious(0) probably_damaging(0.925) TCGA-EE-A29N-06 3 121643849 121643849 C T SLC15A2 Missense_Mutation p.R365C 0.14 deleterious(0) possibly_damaging(0.773) TCGA-EE-A29N-06 3 121659245 121659245 G A SLC15A2 Missense_Mutation p.M641I 0.17 deleterious(0) probably_damaging(0.978) TCGA-EE-A29N-06 3 121980790 121980790 C T CASR Missense_Mutation p.S303F 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A29N-06 3 132061482 132061482 T G ACPP Nonsense_Mutation p.Y214* 0.16 TCGA-EE-A29N-06 3 137964127 137964127 A G ARMC8 Intron 0.19 TCGA-EE-A29N-06 3 138023832 138023832 C T NME9 Missense_Mutation p.G164E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 3 14964555 14964555 C T FGD5 Silent p.I1270I 0.10 TCGA-EE-A29N-06 3 151161558 151161558 G A IGSF10 Missense_Mutation p.S1726F 0.12 deleterious(0.03) benign(0.25) TCGA-EE-A29N-06 3 151474812 151474812 C G AADACL2 Missense_Mutation p.I212M 0.26 deleterious(0.02) possibly_damaging(0.507) TCGA-EE-A29N-06 3 15300546 15300546 C T SH3BP5 Silent p.K227K 0.15 TCGA-EE-A29N-06 3 155200026 155200026 C T PLCH1 Silent p.T1271T 0.12 TCGA-EE-A29N-06 3 155481291 155481291 G A C3orf33 3'UTR 0.15 TCGA-EE-A29N-06 3 167218007 167218007 T C WDR49 Missense_Mutation p.K637E 0.18 deleterious(0.02) benign(0.159) TCGA-EE-A29N-06 3 172674560 172674560 G A SPATA16 Missense_Mutation p.P330S 0.16 deleterious(0) possibly_damaging(0.803) TCGA-EE-A29N-06 3 176769418 176769418 C T TBL1XR1 Missense_Mutation p.D101N 0.16 tolerated(0.33) benign(0.001) TCGA-EE-A29N-06 3 183495391 183495391 C T YEATS2 Missense_Mutation p.S880L 0.14 deleterious_low_confidence(0) benign(0.146) TCGA-EE-A29N-06 3 184100474 184100474 G A CHRD Silent p.G298G 0.13 TCGA-EE-A29N-06 3 189526134 189526134 C T TP63 Missense_Mutation p.P133L 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29N-06 3 189582062 189582062 G A TP63 Silent p.K207K 0.13 TCGA-EE-A29N-06 3 193051540 193051540 C T ATP13A5 Missense_Mutation p.G424E 0.11 tolerated(0.54) benign(0.031) TCGA-EE-A29N-06 3 31774767 31774767 G A OSBPL10 Silent p.T359T 0.12 TCGA-EE-A29N-06 3 35780906 35780906 C T ARPP21 Missense_Mutation p.S582F 0.20 deleterious(0.02) possibly_damaging(0.844) TCGA-EE-A29N-06 3 38622716 38622716 C T SCN5A Nonsense_Mutation p.W978* 0.36 TCGA-EE-A29N-06 3 39226948 39226948 G A XIRP1 Missense_Mutation p.P1330L 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A29N-06 3 40352421 40352421 C T EIF1B Silent p.L23L 0.11 TCGA-EE-A29N-06 3 40352422 40352422 C T EIF1B Missense_Mutation p.P24S 0.11 tolerated(0.13) benign(0.001) TCGA-EE-A29N-06 3 45988910 45988910 G A CXCR6 Missense_Mutation p.G313R 0.23 tolerated(0.52) benign(0.017) TCGA-EE-A29N-06 3 45988911 45988911 G A CXCR6 Missense_Mutation p.G313E 0.22 tolerated(0.86) benign(0.081) TCGA-EE-A29N-06 3 46586695 46586695 G A LRRC2 Silent p.I58I 0.21 TCGA-EE-A29N-06 3 47629743 47629743 G A SMARCC1 Missense_Mutation p.P1092S 0.18 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A29N-06 3 4810359 4810359 G A ITPR1 Missense_Mutation p.D1949N 0.23 tolerated(0.24) benign(0.15) TCGA-EE-A29N-06 3 48692803 48692803 G A CELSR3 Missense_Mutation p.P1589L 0.16 deleterious(0.04) probably_damaging(1) TCGA-EE-A29N-06 3 48696988 48696988 C T CELSR3 Missense_Mutation p.R1027Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 3 48697368 48697368 G A CELSR3 Silent p.N900N 0.36 TCGA-EE-A29N-06 3 52378581 52378581 T A DNAH1 Missense_Mutation p.F454L 0.11 benign(0.011) TCGA-EE-A29N-06 3 52780208 52780208 G A NEK4 Nonsense_Mutation p.R566* 0.20 TCGA-EE-A29N-06 3 54952651 54952651 G A LRTM1 Silent p.I291I 0.22 TCGA-EE-A29N-06 3 54959205 54959205 G A LRTM1 Silent p.L15L 0.11 TCGA-EE-A29N-06 3 56183149 56183149 G A ERC2 Silent p.I387I 0.10 TCGA-EE-A29N-06 3 64641303 64641303 G A ADAMTS9 Missense_Mutation p.S373L 0.18 tolerated(0.06) benign(0.015) TCGA-EE-A29N-06 3 65479297 65479297 C T MAGI1 Missense_Mutation p.R147Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A29N-06 3 75680001 75680001 G A MIR1324 RNA 0.08 TCGA-EE-A29N-06 3 87039870 87039870 A T VGLL3 Nonsense_Mutation p.Y8* 0.37 TCGA-EE-A29N-06 3 9547761 9547761 A T LHFPL4 Missense_Mutation p.I178N 0.14 deleterious(0) probably_damaging(0.981) TCGA-EE-A29N-06 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 3 96706780 96706780 C T EPHA6 Missense_Mutation p.P353S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 3 97868996 97868996 C T OR5H14 Missense_Mutation p.A256V 0.20 tolerated(0.05) benign(0.002) TCGA-EE-A29N-06 4 100237204 100237204 G A ADH1B Missense_Mutation p.H140Y 0.18 deleterious(0) possibly_damaging(0.896) TCGA-EE-A29N-06 4 118975844 118975844 A C NDST3 Missense_Mutation p.D260A 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 4 119203267 119203267 C G PRSS12 Missense_Mutation p.V818L 0.23 tolerated(0.09) possibly_damaging(0.519) TCGA-EE-A29N-06 4 119978960 119978960 T C SYNPO2 Silent p.Y1219Y 0.17 TCGA-EE-A29N-06 4 1208229 1208229 G A CTBP1 Silent p.A265A 0.17 TCGA-EE-A29N-06 4 121957405 121957405 C T NDNF 3'UTR 0.11 TCGA-EE-A29N-06 4 123113461 123113461 C T KIAA1109 Missense_Mutation p.P327S 0.15 probably_damaging(0.998) TCGA-EE-A29N-06 4 129783053 129783053 C T JADE1 Silent p.S392S 0.16 TCGA-EE-A29N-06 4 145038046 145038046 C T GYPA Silent p.T106T 0.18 TCGA-EE-A29N-06 4 146025597 146025597 C T ABCE1 Silent p.V11V 0.12 TCGA-EE-A29N-06 4 149356890 149356890 G A NR3C2 Missense_Mutation p.P375S 0.15 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-EE-A29N-06 4 151392883 151392883 G A LRBA Missense_Mutation p.S2198L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 4 153691255 153691255 G A TIGD4 Missense_Mutation p.S301F 0.15 deleterious(0) possibly_damaging(0.789) TCGA-EE-A29N-06 4 156775308 156775308 A C ASIC5 Missense_Mutation p.F169C 0.14 deleterious(0) probably_damaging(0.922) TCGA-EE-A29N-06 4 188924380 188924380 C T ZFP42 Missense_Mutation p.S140L 0.14 tolerated(0.06) benign(0.006) TCGA-EE-A29N-06 4 189012755 189012755 G A TRIML2 Silent p.F312F 0.15 TCGA-EE-A29N-06 4 37846085 37846085 C T PGM2 Missense_Mutation p.P274S 0.13 tolerated(0.05) benign(0.068) TCGA-EE-A29N-06 4 38016259 38016259 G A TBC1D1 Missense_Mutation p.V183M 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 4 41265263 41265263 C T UCHL1 Missense_Mutation p.H161Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A29N-06 4 47939783 47939783 T C CNGA1 Missense_Mutation p.N312S 0.13 tolerated(0.99) benign(0.007) TCGA-EE-A29N-06 4 48487027 48487027 G A SLC10A4 Nonsense_Mutation p.W223* 0.17 TCGA-EE-A29N-06 4 49063906 49063906 G A CWH43 Silent p.%3D 0.23 TCGA-EE-A29N-06 4 6596261 6596261 G A MAN2B2 Missense_Mutation p.G287R 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-EE-A29N-06 4 69434164 69434164 C T UGT2B17 Silent p.Q13Q 0.18 TCGA-EE-A29N-06 4 71275517 71275517 C T PROL1 Missense_Mutation p.P158S 0.11 tolerated_low_confidence(0.31) unknown(0) TCGA-EE-A29N-06 4 77691979 77691979 C T SHROOM3 Silent p.S1850S 0.18 TCGA-EE-A29N-06 4 79387463 79387463 G A FRAS1 Missense_Mutation p.M2377I 0.23 possibly_damaging(0.833) TCGA-EE-A29N-06 4 82090825 82090825 G A PRKG2 Silent p.F280F 0.19 TCGA-EE-A29N-06 4 88766630 88766630 C T MEPE Nonsense_Mutation p.Q204* 0.22 TCGA-EE-A29N-06 4 94344033 94344033 G A GRID2 Missense_Mutation p.E487K 0.17 deleterious(0.01) possibly_damaging(0.819) TCGA-EE-A29N-06 4 9784227 9784227 G A DRD5 Missense_Mutation p.D192N 0.24 tolerated(0.39) benign(0.122) TCGA-EE-A29N-06 4 9784482 9784482 G A DRD5 Missense_Mutation p.A277T 0.21 tolerated(0.53) benign(0.014) TCGA-EE-A29N-06 5 102522092 102522092 T A PPIP5K2 Missense_Mutation p.Y1081N 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.726) TCGA-EE-A29N-06 5 111066733 111066733 G A NREP Missense_Mutation p.P75L 0.12 deleterious(0.02) possibly_damaging(0.848) TCGA-EE-A29N-06 5 111066734 111066734 G A NREP Missense_Mutation p.P75S 0.13 deleterious(0.01) possibly_damaging(0.848) TCGA-EE-A29N-06 5 112720776 112720776 G A MCC Nonsense_Mutation p.R102* 0.14 TCGA-EE-A29N-06 5 115298831 115298831 C G AQPEP Missense_Mutation p.R173G 0.17 tolerated(0.2) benign(0.067) TCGA-EE-A29N-06 5 133316436 133316436 G A VDAC1 Nonsense_Mutation p.Q179* 0.27 TCGA-EE-A29N-06 5 133509699 133509699 C T SKP1 Silent p.K5K 0.10 TCGA-EE-A29N-06 5 140237071 140237071 G A PCDHA10 Missense_Mutation p.D480N 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A29N-06 5 140250357 140250357 G A PCDHA11 Missense_Mutation p.E557K 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.836) TCGA-EE-A29N-06 5 140517171 140517171 G A PCDHB5 Missense_Mutation p.A719T 0.17 tolerated_low_confidence(0.13) benign(0.043) TCGA-EE-A29N-06 5 140554611 140554611 G A PCDHB7 Missense_Mutation p.R732Q 0.08 deleterious_low_confidence(0) benign(0.006) TCGA-EE-A29N-06 5 140579527 140579527 C T PCDHB11 Silent p.S60S 0.14 TCGA-EE-A29N-06 5 140590171 140590171 G A PCDHB12 Silent p.P564P 0.21 TCGA-EE-A29N-06 5 140710501 140710501 T C PCDHGA1 Silent p.L84L 0.17 TCGA-EE-A29N-06 5 140718536 140718536 G A PCDHGA1 Intron 0.12 TCGA-EE-A29N-06 5 140735399 140735399 T C PCDHGA4 Missense_Mutation p.V211A 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.517) TCGA-EE-A29N-06 5 140870982 140870982 G A PCDHGC5 Silent p.G725G 0.20 TCGA-EE-A29N-06 5 149580710 149580710 G A SLC6A7 Missense_Mutation p.G261E 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 5 153175055 153175055 G A GRIA1 Intron 0.25 TCGA-EE-A29N-06 5 154272026 154272026 G A GEMIN5 Silent p.L1227L 0.16 TCGA-EE-A29N-06 5 156752589 156752589 C T CYFIP2 Missense_Mutation p.S616F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 5 161580116 161580116 C T GABRG2 Silent p.I430I 0.16 TCGA-EE-A29N-06 5 169454876 169454876 G A DOCK2 Missense_Mutation p.E1131K 0.21 deleterious(0.02) possibly_damaging(0.899) TCGA-EE-A29N-06 5 170232826 170232826 C T GABRP Silent p.F216F 0.18 TCGA-EE-A29N-06 5 171491790 171491790 G A STK10 Silent p.P672P 0.18 TCGA-EE-A29N-06 5 176070207 176070207 G A EIF4E1B Missense_Mutation p.G47E 0.12 tolerated(0.85) benign(0.079) TCGA-EE-A29N-06 5 176306860 176306860 C T UNC5A Silent p.L834L 0.17 TCGA-EE-A29N-06 5 178506847 178506847 C T ZNF354C Nonsense_Mutation p.Q472* 0.23 TCGA-EE-A29N-06 5 180668525 180668525 C T GNB2L1 Nonsense_Mutation p.W132* 0.18 TCGA-EE-A29N-06 5 32090403 32090403 G A PDZD2 Silent p.L2283L 0.20 TCGA-EE-A29N-06 5 35065841 35065841 G A PRLR Missense_Mutation p.H407Y 0.17 tolerated(0.54) benign(0.01) TCGA-EE-A29N-06 5 35795863 35795863 C G SPEF2 Missense_Mutation p.P1599R 0.17 deleterious(0) probably_damaging(0.994) TCGA-EE-A29N-06 5 38482697 38482697 G A LIFR Silent p.V888V 0.10 TCGA-EE-A29N-06 5 52223444 52223444 C T ITGA1 Missense_Mutation p.H882Y 0.15 deleterious(0.03) possibly_damaging(0.507) TCGA-EE-A29N-06 5 54579183 54579183 C T DHX29 Missense_Mutation p.V605I 0.17 tolerated(0.7) benign(0.066) TCGA-EE-A29N-06 5 55088625 55088625 G A DDX4 Missense_Mutation p.E487K 0.20 deleterious(0) possibly_damaging(0.842) TCGA-EE-A29N-06 5 64920825 64920825 C T CTC-534A2.2 5'UTR 0.24 TCGA-EE-A29N-06 5 66459221 66459221 G A MAST4 Missense_Mutation p.G1405D 0.30 probably_damaging(0.956) TCGA-EE-A29N-06 5 72192969 72192969 G A TNPO1 Missense_Mutation p.E777K 0.20 deleterious(0.05) possibly_damaging(0.813) TCGA-EE-A29N-06 5 72419678 72419678 T C TMEM171 Missense_Mutation p.F160L 0.19 tolerated(0.2) benign(0.034) TCGA-EE-A29N-06 5 77745826 77745826 C T SCAMP1 Silent p.L234L 0.10 TCGA-EE-A29N-06 5 79026497 79026497 G A CMYA5 Missense_Mutation p.E637K 0.20 benign(0.036) TCGA-EE-A29N-06 5 79054694 79054694 G A CMYA5 Missense_Mutation p.M3743I 0.19 benign(0.444) TCGA-EE-A29N-06 5 89990242 89990242 C T GPR98 Nonsense_Mutation p.Q2557* 0.14 TCGA-EE-A29N-06 5 94772524 94772524 G A FAM81B Silent p.K269K 0.23 TCGA-EE-A29N-06 6 107391441 107391441 C T BEND3 Silent p.V318V 0.21 TCGA-EE-A29N-06 6 10764829 10764829 C T MAK Nonsense_Mutation p.W576* 0.12 TCGA-EE-A29N-06 6 108489328 108489328 C T NR2E1 Intron 0.42 TCGA-EE-A29N-06 6 116442033 116442033 C T COL10A1 Missense_Mutation p.G416R 0.25 deleterious(0) unknown(0) TCGA-EE-A29N-06 6 119522418 119522418 C T MAN1A1 Splice_Site p.X404_splice 0.17 TCGA-EE-A29N-06 6 12718966 12718966 G A PHACTR1 5'UTR 0.18 TCGA-EE-A29N-06 6 129963080 129963080 G A ARHGAP18 Missense_Mutation p.S66F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 6 132031693 132031693 T G CTAGE9 Missense_Mutation p.E155D 0.27 deleterious(0.05) benign(0.16) TCGA-EE-A29N-06 6 132938515 132938515 G A TAAR2 Missense_Mutation p.P277L 0.26 deleterious(0.03) probably_damaging(1) TCGA-EE-A29N-06 6 138655216 138655216 G A KIAA1244 Missense_Mutation p.E1745K 0.14 tolerated(0.31) benign(0.04) TCGA-EE-A29N-06 6 139222119 139222119 C T ECT2L Missense_Mutation p.L817F 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 6 144774983 144774983 C T UTRN Silent p.I754I 0.16 TCGA-EE-A29N-06 6 158923850 158923850 C T TULP4 Missense_Mutation p.S1052F 0.41 tolerated_low_confidence(0.11) benign(0.019) TCGA-EE-A29N-06 6 159420551 159420551 C T RSPH3 Missense_Mutation p.R153Q 0.13 tolerated(0.58) benign(0.008) TCGA-EE-A29N-06 6 161505568 161505568 G C MAP3K4 Missense_Mutation p.S764T 0.11 tolerated(0.48) benign(0.039) TCGA-EE-A29N-06 6 167717444 167717444 C T UNC93A Silent p.F221F 0.19 TCGA-EE-A29N-06 6 167717445 167717445 C T UNC93A Missense_Mutation p.L222F 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A29N-06 6 1742779 1742779 G A GMDS Silent p.F271F 0.21 TCGA-EE-A29N-06 6 24563603 24563603 C A KIAA0319 Missense_Mutation p.A859S 0.11 deleterious(0.05) probably_damaging(0.91) TCGA-EE-A29N-06 6 26506979 26506979 C T BTN1A1 Missense_Mutation p.L260F 0.21 tolerated(0.09) benign(0.21) TCGA-EE-A29N-06 6 2768977 2768977 T A WRNIP1 Missense_Mutation p.F292Y 0.23 tolerated(0.08) benign(0.313) TCGA-EE-A29N-06 6 30164463 30164463 G A TRIM26 Silent p.L199L 0.22 TCGA-EE-A29N-06 6 31378342 31378342 C T MICA Silent p.N31N 0.14 TCGA-EE-A29N-06 6 31378343 31378343 C T MICA Missense_Mutation p.L32F 0.13 tolerated(0.15) probably_damaging(0.989) TCGA-EE-A29N-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.18 TCGA-EE-A29N-06 6 31935791 31935791 C T SKIV2L Silent p.T930T 0.18 TCGA-EE-A29N-06 6 32065631 32065631 C T TNXB Silent p.K115K 0.24 TCGA-EE-A29N-06 6 32135873 32135873 A C EGFL8 3'UTR 0.14 TCGA-EE-A29N-06 6 32135874 32135874 G A EGFL8 3'UTR 0.14 TCGA-EE-A29N-06 6 33247142 33247142 G A WDR46 Missense_Mutation p.R582W 0.18 deleterious(0) possibly_damaging(0.902) TCGA-EE-A29N-06 6 33380097 33380097 T G PHF1 Silent p.A19A 0.19 TCGA-EE-A29N-06 6 33967758 33967758 C T MIR1275 RNA 0.20 TCGA-EE-A29N-06 6 35423925 35423925 C T FANCE Missense_Mutation p.P217L 0.19 tolerated(0.23) benign(0.093) TCGA-EE-A29N-06 6 35423926 35423926 C T FANCE Silent p.P217P 0.17 TCGA-EE-A29N-06 6 37250023 37250023 C T TBC1D22B Missense_Mutation p.P162S 0.13 deleterious(0.04) benign(0.039) TCGA-EE-A29N-06 6 37250024 37250024 C T TBC1D22B Missense_Mutation p.P162L 0.11 deleterious(0.03) benign(0.015) TCGA-EE-A29N-06 6 38980032 38980032 G A DNAH8 Missense_Mutation p.M4254I 0.18 benign(0.192) TCGA-EE-A29N-06 6 41715031 41715031 C T PGC Silent p.L14L 0.09 TCGA-EE-A29N-06 6 42236589 42236589 C T TRERF1 Missense_Mutation p.G247E 0.20 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-EE-A29N-06 6 42797570 42797570 C T GLTSCR1L Missense_Mutation p.P500L 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29N-06 6 42903379 42903379 G T CNPY3 Nonsense_Mutation p.E115* 0.14 TCGA-EE-A29N-06 6 44122487 44122487 C T TMEM63B Missense_Mutation p.P789L 0.21 deleterious(0.02) benign(0.04) TCGA-EE-A29N-06 6 45480128 45480128 G A RUNX2 Silent p.V335V 0.14 TCGA-EE-A29N-06 6 46518083 46518083 C T CYP39A1 3'UTR 0.22 TCGA-EE-A29N-06 6 46851899 46851899 G A GPR116 Silent p.L146L 0.20 TCGA-EE-A29N-06 6 47846581 47846581 C T PTCHD4 Missense_Mutation p.G667S 0.15 tolerated(0.76) benign(0.084) TCGA-EE-A29N-06 6 52103660 52103660 A G IL17F Missense_Mutation p.F41S 0.14 tolerated(0.34) benign(0.015) TCGA-EE-A29N-06 6 55192304 55192304 G A GFRAL 5'UTR 0.26 TCGA-EE-A29N-06 6 55378806 55378806 A T HMGCLL1 Intron 0.20 TCGA-EE-A29N-06 6 57012014 57012014 C T ZNF451 Silent p.T377T 0.30 TCGA-EE-A29N-06 6 6305714 6305714 C T F13A1 Silent p.V63V 0.20 TCGA-EE-A29N-06 6 69348983 69348983 C A BAI3 Missense_Mutation p.P139Q 0.18 tolerated(0.15) benign(0.032) TCGA-EE-A29N-06 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 6 7580796 7580796 G A DSP Missense_Mutation p.R1458Q 0.12 benign(0.001) TCGA-EE-A29N-06 6 80732173 80732173 G A TTK Missense_Mutation p.R414Q 0.20 tolerated(0.6) benign(0.001) TCGA-EE-A29N-06 6 83733701 83733701 G A UBE3D Missense_Mutation p.P242S 0.23 tolerated(1) benign(0.088) TCGA-EE-A29N-06 6 90648048 90648048 C T BACH2 Missense_Mutation p.D620N 0.14 deleterious(0.05) possibly_damaging(0.492) TCGA-EE-A29N-06 6 96652049 96652049 C T FUT9 Missense_Mutation p.H340Y 0.25 tolerated(1) benign(0.08) TCGA-EE-A29N-06 7 100174718 100174718 G A LRCH4 Missense_Mutation p.A452V 0.10 tolerated(0.22) benign(0.118) TCGA-EE-A29N-06 7 102097808 102097808 G A ALKBH4 3'UTR 0.18 TCGA-EE-A29N-06 7 102097809 102097809 G A ALKBH4 3'UTR 0.17 TCGA-EE-A29N-06 7 103801596 103801596 G A ORC5 Missense_Mutation p.P358L 0.18 deleterious(0) probably_damaging(0.989) TCGA-EE-A29N-06 7 103801597 103801597 G A ORC5 Missense_Mutation p.P358S 0.17 tolerated(0.06) possibly_damaging(0.788) TCGA-EE-A29N-06 7 105667134 105667134 G A CDHR3 Silent p.K755K 0.10 TCGA-EE-A29N-06 7 105894856 105894856 A T NAMPT Nonsense_Mutation p.L395* 0.16 TCGA-EE-A29N-06 7 107834800 107834800 A T NRCAM Silent p.I512I 0.34 TCGA-EE-A29N-06 7 113522155 113522155 C T PPP1R3A Missense_Mutation p.R302Q 0.15 tolerated(1) benign(0) TCGA-EE-A29N-06 7 114563024 114563024 C G MDFIC Missense_Mutation p.S88C 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.843) TCGA-EE-A29N-06 7 117180347 117180347 C T CFTR Missense_Mutation p.P355S 0.15 tolerated(0.06) possibly_damaging(0.464) TCGA-EE-A29N-06 7 128394459 128394459 G T CALU Intron 0.31 TCGA-EE-A29N-06 7 128498224 128498224 C T FLNC Missense_Mutation p.A2648V 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A29N-06 7 129019555 129019555 C T AHCYL2 Missense_Mutation p.S147F 0.10 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-EE-A29N-06 7 133979702 133979702 G A SLC35B4 Silent p.T293T 0.25 TCGA-EE-A29N-06 7 135328088 135328088 C T NUP205 Silent p.P1847P 0.14 TCGA-EE-A29N-06 7 135390892 135390892 T - SLC13A4 Frame_Shift_Del p.E175Rfs*9 0.29 TCGA-EE-A29N-06 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.20 deleterious(0) possibly_damaging(0.803) TCGA-EE-A29N-06 7 141673076 141673076 C T TAS2R38 Silent p.R138R 0.26 TCGA-EE-A29N-06 7 141739966 141739966 G A MGAM Missense_Mutation p.E790K 0.31 deleterious(0.04) benign(0.016) TCGA-EE-A29N-06 7 141951999 141951999 G A PRSS58 3'UTR 0.25 TCGA-EE-A29N-06 7 141955402 141955402 G A PRSS58 Silent p.V44V 0.28 TCGA-EE-A29N-06 7 142231867 142231867 C T TRBV10-1 Missense_Mutation p.G17E 0.33 deleterious(0) benign(0.317) TCGA-EE-A29N-06 7 148080826 148080826 C T CNTNAP2 Silent p.I1187I 0.16 TCGA-EE-A29N-06 7 148112556 148112556 C T CNTNAP2 Silent p.L1282L 0.14 TCGA-EE-A29N-06 7 1488346 1488346 C T MICALL2 Missense_Mutation p.E82K 0.12 deleterious(0) probably_damaging(0.955) TCGA-EE-A29N-06 7 150648678 150648678 G A KCNH2 Silent p.G601G 0.29 TCGA-EE-A29N-06 7 150873298 150873298 G A ASB10 Silent p.S435S 0.14 TCGA-EE-A29N-06 7 151046271 151046271 A G NUB1 Missense_Mutation p.Y101C 0.17 deleterious(0) probably_damaging(0.922) TCGA-EE-A29N-06 7 17379730 17379730 C T AHR Missense_Mutation p.P761S 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.77) TCGA-EE-A29N-06 7 17379731 17379731 C T AHR Missense_Mutation p.P761L 0.12 deleterious_low_confidence(0.02) benign(0.111) TCGA-EE-A29N-06 7 2611180 2611180 C T IQCE Missense_Mutation p.P51S 0.16 tolerated(0.07) possibly_damaging(0.486) TCGA-EE-A29N-06 7 31904663 31904663 C A PDE1C Missense_Mutation p.A275S 0.20 tolerated(0.17) benign(0.268) TCGA-EE-A29N-06 7 36466575 36466575 C T ANLN Missense_Mutation p.L941F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29N-06 7 4091420 4091420 G A SDK1 Missense_Mutation p.G957R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29N-06 7 43548464 43548464 C T HECW1 Intron 0.19 TCGA-EE-A29N-06 7 47814750 47814750 C T PKD1L1 Silent p.K2847K 0.32 TCGA-EE-A29N-06 7 48431685 48431685 C T ABCA13 Missense_Mutation p.S3941F 0.25 probably_damaging(0.989) TCGA-EE-A29N-06 7 50571701 50571701 G A DDC Silent p.V257V 0.31 TCGA-EE-A29N-06 7 5780684 5780684 C T RNF216 Missense_Mutation p.E322K 0.24 tolerated(0.16) benign(0.423) TCGA-EE-A29N-06 7 6080809 6080809 G A EIF2AK1 Missense_Mutation p.S278F 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29N-06 7 6631409 6631409 A T C7orf26 Missense_Mutation p.S109C 0.14 tolerated(0.13) benign(0.077) TCGA-EE-A29N-06 7 75023590 75023590 G A TRIM73 5'Flank 0.20 TCGA-EE-A29N-06 7 76828889 76828889 C T FGL2 Silent p.R74R 0.17 TCGA-EE-A29N-06 7 8124620 8124620 A C GLCCI1 Missense_Mutation p.E424A 0.15 deleterious(0) possibly_damaging(0.554) TCGA-EE-A29N-06 7 82582446 82582446 G A PCLO Missense_Mutation p.S2608L 0.15 unknown(0) TCGA-EE-A29N-06 7 87196208 87196208 T C ABCB1 Silent p.G141G 0.24 TCGA-EE-A29N-06 7 87746124 87746124 C T ADAM22 Missense_Mutation p.P201L 0.17 tolerated(0.06) benign(0.001) TCGA-EE-A29N-06 7 95709713 95709713 C T DYNC1I1 Silent p.A580A 0.36 TCGA-EE-A29N-06 8 100287445 100287445 C T VPS13B Silent p.I929I 0.19 TCGA-EE-A29N-06 8 100880528 100880528 G A VPS13B Missense_Mutation p.G3768S 0.24 deleterious(0) benign(0.278) TCGA-EE-A29N-06 8 110530696 110530696 T C PKHD1L1 Missense_Mutation p.I3997T 0.20 deleterious(0) possibly_damaging(0.724) TCGA-EE-A29N-06 8 113318319 113318319 C T CSMD3 Missense_Mutation p.R2663Q 0.26 tolerated(0.34) possibly_damaging(0.842) TCGA-EE-A29N-06 8 125103762 125103762 G A FER1L6 Missense_Mutation p.G1497E 0.18 tolerated(0.12) benign(0.435) TCGA-EE-A29N-06 8 143823809 143823809 C T SLURP1 5'UTR 0.27 TCGA-EE-A29N-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.14 deleterious(0) probably_damaging(0.933) TCGA-EE-A29N-06 8 144332051 144332051 C T ZFP41 Missense_Mutation p.T13I 0.32 tolerated(0.06) benign(0.024) TCGA-EE-A29N-06 8 144332052 144332052 C T ZFP41 Silent p.T13T 0.33 TCGA-EE-A29N-06 8 145583942 145583942 C T SLC52A2 Missense_Mutation p.P264S 0.27 tolerated(0.35) benign(0.007) TCGA-EE-A29N-06 8 1626478 1626478 G A DLGAP2 Missense_Mutation p.G716D 0.24 tolerated(0.22) probably_damaging(0.983) TCGA-EE-A29N-06 8 21767095 21767095 A T DOK2 Silent p.P322P 0.19 TCGA-EE-A29N-06 8 21767096 21767096 G A DOK2 Missense_Mutation p.P322L 0.20 deleterious(0.01) benign(0.007) TCGA-EE-A29N-06 8 21982912 21982912 G A HR Silent p.L554L 0.23 TCGA-EE-A29N-06 8 24167700 24167700 G A ADAM28 Silent p.T84T 0.34 TCGA-EE-A29N-06 8 3200828 3200828 G A CSMD1 Missense_Mutation p.L1207F 0.17 probably_damaging(0.999) TCGA-EE-A29N-06 8 32505589 32505589 G A NRG1 Intron 0.17 TCGA-EE-A29N-06 8 35542226 35542226 G A UNC5D Missense_Mutation p.G293E 0.15 deleterious(0) possibly_damaging(0.776) TCGA-EE-A29N-06 8 39564383 39564383 C T ADAM18 Silent p.S659S 0.17 TCGA-EE-A29N-06 8 41552702 41552702 C T ANK1 Missense_Mutation p.M1077I 0.18 deleterious(0) benign(0.051) TCGA-EE-A29N-06 8 41584783 41584783 C T ANK1 Silent p.Q170Q 0.21 TCGA-EE-A29N-06 8 69050737 69050737 G A PREX2 Missense_Mutation p.E1358K 0.14 deleterious(0.02) benign(0.033) TCGA-EE-A29N-06 8 73480030 73480030 C T KCNB2 Missense_Mutation p.P21S 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A29N-06 8 88249162 88249162 G A CNBD1 Missense_Mutation p.G198E 0.18 deleterious(0) probably_damaging(0.99) TCGA-EE-A29N-06 8 95680313 95680313 G A ESRP1 Silent p.K356K 0.16 TCGA-EE-A29N-06 8 95680314 95680314 G A ESRP1 Missense_Mutation p.E357K 0.16 deleterious(0.04) benign(0.295) TCGA-EE-A29N-06 9 104032255 104032255 G A LPPR1 Missense_Mutation p.G53R 0.33 tolerated(0.15) benign(0.026) TCGA-EE-A29N-06 9 104385660 104385660 C T GRIN3A Missense_Mutation p.E852K 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A29N-06 9 108536265 108536265 A G TMEM38B Silent p.A260A 0.20 TCGA-EE-A29N-06 9 112969770 112969770 G A C9orf152 Silent p.A30A 0.29 TCGA-EE-A29N-06 9 115759580 115759580 G A ZNF883 RNA 0.17 TCGA-EE-A29N-06 9 119028244 119028244 T C PAPPA Silent p.C947C 0.25 TCGA-EE-A29N-06 9 120475867 120475867 C T TLR4 Silent p.F487F 0.25 TCGA-EE-A29N-06 9 123858791 123858791 A C CNTRL Missense_Mutation p.K191Q 0.16 probably_damaging(0.973) TCGA-EE-A29N-06 9 130985086 130985086 G A DNM1 Silent p.E381E 0.16 TCGA-EE-A29N-06 9 131455214 131455215 - T SET Frame_Shift_Ins p.D163* 0.15 TCGA-EE-A29N-06 9 131600646 131600646 C T CCBL1 Missense_Mutation p.G68S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 9 139252529 139252529 C G GPSM1 Missense_Mutation p.P629A 0.22 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29N-06 9 139391771 139391771 G A NOTCH1 Silent p.C2140C 0.28 TCGA-EE-A29N-06 9 140446788 140446788 C T MRPL41 Silent p.P85P 0.23 TCGA-EE-A29N-06 9 140507443 140507443 T A ARRDC1 Missense_Mutation p.S72T 0.24 tolerated(0.13) benign(0.256) TCGA-EE-A29N-06 9 140507444 140507444 C T ARRDC1 Missense_Mutation p.S72L 0.21 tolerated(0.09) possibly_damaging(0.481) TCGA-EE-A29N-06 9 14722376 14722376 C T CER1 Missense_Mutation p.D99N 0.32 deleterious(0.05) possibly_damaging(0.536) TCGA-EE-A29N-06 9 35093124 35093124 C T PIGO Missense_Mutation p.G341E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 9 35699385 35699385 G A TLN1 Missense_Mutation p.T2281I 0.28 deleterious(0) probably_damaging(0.928) TCGA-EE-A29N-06 9 79117829 79117829 G T GCNT1 Missense_Mutation p.V178L 0.28 tolerated(0.22) benign(0.16) TCGA-EE-A29N-06 9 8518175 8518175 C T PTPRD Missense_Mutation p.E406K 0.27 tolerated(0.24) probably_damaging(0.984) TCGA-EE-A29N-06 9 90502614 90502614 G A SPATA31E1 Missense_Mutation p.G1071E 0.23 tolerated(0.07) possibly_damaging(0.835) TCGA-EE-A29N-06 9 91949551 91949551 C T SECISBP2 Missense_Mutation p.A332V 0.27 tolerated(0.09) benign(0.259) TCGA-EE-A29N-06 X 107814658 107814658 C T COL4A5 Missense_Mutation p.P134S 0.41 unknown(0) TCGA-EE-A29N-06 X 109695732 109695732 G A RGAG1 Silent p.T629T 0.40 TCGA-EE-A29N-06 X 111097218 111097218 G A TRPC5 Silent p.F339F 0.58 TCGA-EE-A29N-06 X 117043543 117043543 C T KLHL13 Missense_Mutation p.D366N 0.34 tolerated(0.26) benign(0.175) TCGA-EE-A29N-06 X 120008962 120008962 C T CT47B1 Missense_Mutation p.G188D 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29N-06 X 123785874 123785874 G A TENM1 Missense_Mutation p.S490L 0.36 tolerated(0.12) benign(0.007) TCGA-EE-A29N-06 X 135428106 135428106 C T GPR112 Silent p.S747S 0.33 TCGA-EE-A29N-06 X 148798210 148798210 C T MAGEA11 Missense_Mutation p.P355L 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A29N-06 X 150348646 150348646 C T GPR50 Silent p.F197F 0.36 TCGA-EE-A29N-06 X 152037544 152037544 C T NSDHL Missense_Mutation p.H336Y 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A29N-06 X 152860109 152860109 C - FAM58A Frame_Shift_Del p.E107Nfs*21 0.26 TCGA-EE-A29N-06 X 153628212 153628212 A T RPL10 Missense_Mutation p.I87F 0.42 deleterious(0.03) possibly_damaging(0.863) TCGA-EE-A29N-06 X 153628213 153628213 T C RPL10 Missense_Mutation p.I87T 0.42 tolerated(0.07) benign(0.231) TCGA-EE-A29N-06 X 154124374 154124374 C T F8 Missense_Mutation p.G2136E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29N-06 X 15609836 15609836 G A ACE2 Missense_Mutation p.H195Y 0.39 deleterious(0) benign(0.149) TCGA-EE-A29N-06 X 24006085 24006085 G A KLHL15 Silent p.L590L 0.37 TCGA-EE-A29N-06 X 3242045 3242045 C T MXRA5 Missense_Mutation p.D561N 0.36 tolerated(0.06) probably_damaging(0.974) TCGA-EE-A29N-06 X 34961863 34961863 C T FAM47B Silent p.S305S 0.20 TCGA-EE-A29N-06 X 45011044 45011044 G A CXorf36 Silent p.I385I 0.34 TCGA-EE-A29N-06 X 49853375 49853375 C T CLCN5 Silent p.I526I 0.34 TCGA-EE-A29N-06 X 64753590 64753590 C G LAS1L Missense_Mutation p.V88L 0.49 deleterious(0) probably_damaging(0.99) TCGA-EE-A29N-06 X 67938344 67938344 G A STARD8 Missense_Mutation p.E530K 0.25 deleterious(0) possibly_damaging(0.847) TCGA-EE-A29N-06 X 73066285 73066285 A G XIST RNA 0.47 TCGA-EE-A29N-06 X 78427409 78427409 G A GPR174 Missense_Mutation p.R302Q 0.36 tolerated(0.9) probably_damaging(0.999) TCGA-EE-A29P-06 10 12043749 12043749 A C UPF2 Missense_Mutation p.I527S 0.21 tolerated(0.11) benign(0.018) TCGA-EE-A29P-06 10 124352087 124352087 G A DMBT1 Missense_Mutation p.E826K 0.34 deleterious(0) unknown(0) TCGA-EE-A29P-06 10 135372393 135372393 C T SYCE1 Missense_Mutation p.E87K 0.37 deleterious(0) probably_damaging(0.981) TCGA-EE-A29P-06 10 37430903 37430903 G A ANKRD30A Missense_Mutation p.E304K 0.54 tolerated(1) possibly_damaging(0.636) TCGA-EE-A29P-06 10 37488708 37488708 G A ANKRD30A Missense_Mutation p.D868N 0.31 tolerated(1) benign(0) TCGA-EE-A29P-06 10 55566538 55566538 G A PCDH15 Missense_Mutation p.P1616L 0.43 tolerated_low_confidence(0.24) benign(0.01) TCGA-EE-A29P-06 10 55566539 55566539 G A PCDH15 Missense_Mutation p.P1616S 0.43 tolerated_low_confidence(0.89) benign(0.01) TCGA-EE-A29P-06 10 72537079 72537079 C T TBATA Missense_Mutation p.E174K 0.50 tolerated(0.08) possibly_damaging(0.864) TCGA-EE-A29P-06 10 89720711 89720712 - A PTEN Frame_Shift_Ins p.V290Sfs*8 0.25 TCGA-EE-A29P-06 10 96333840 96333840 C T HELLS Missense_Mutation p.P201S 0.36 tolerated(0.11) benign(0.038) TCGA-EE-A29P-06 11 101342876 101342876 C T TRPC6 Missense_Mutation p.E733K 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29P-06 11 114453715 114453715 G A NXPE4 Missense_Mutation p.S42F 0.16 tolerated(0.16) benign(0.019) TCGA-EE-A29P-06 11 118239488 118239488 C T UBE4A Silent p.I88I 0.14 TCGA-EE-A29P-06 11 123993680 123993680 A G VWA5A Silent p.G258G 0.27 TCGA-EE-A29P-06 11 133792520 133792520 G A IGSF9B Missense_Mutation p.T742I 0.42 tolerated(0.22) probably_damaging(0.999) TCGA-EE-A29P-06 11 30439175 30439175 G A MPPED2 Missense_Mutation p.P181L 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A29P-06 11 46419286 46419286 G A AMBRA1 Missense_Mutation p.S1114F 0.26 tolerated_low_confidence(0.06) benign(0.349) TCGA-EE-A29P-06 11 49831670 49831670 C T RP11-707M1.1 RNA 0.38 TCGA-EE-A29P-06 11 49974376 49974376 G A OR4C13 Missense_Mutation p.M134I 0.48 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-EE-A29P-06 11 59245552 59245552 C T OR4D10 Missense_Mutation p.S217F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 11 59620483 59620483 C T TCN1 Missense_Mutation p.G423R 0.37 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A29P-06 11 62293194 62293205 TTTTCATCTTGG - AHNAK In_Frame_Del p.P2895_M2899delinsL 0.13 TCGA-EE-A29P-06 11 62295721 62295721 G A AHNAK Silent p.F2056F 0.17 TCGA-EE-A29P-06 11 77920580 77920580 C T USP35 Missense_Mutation p.A560V 0.47 tolerated(0.3) unknown(0) TCGA-EE-A29P-06 11 78369088 78369088 C T TENM4 3'UTR 0.16 TCGA-EE-A29P-06 11 7847265 7847265 G A OR5P3 Silent p.F85F 0.47 TCGA-EE-A29P-06 11 83810091 83810091 C T DLG2 Splice_Site p.X209_splice 0.44 TCGA-EE-A29P-06 11 89424676 89424676 C T FOLH1B RNA 0.18 TCGA-EE-A29P-06 12 100813728 100813728 G A SLC17A8 Missense_Mutation p.G521R 0.41 deleterious(0.04) probably_damaging(0.96) TCGA-EE-A29P-06 12 104056642 104056642 G A STAB2 Missense_Mutation p.D630N 0.48 tolerated(0.16) benign(0.009) TCGA-EE-A29P-06 12 108985650 108985650 C T TMEM119 Silent p.R170R 0.15 TCGA-EE-A29P-06 12 112622448 112622448 G A HECTD4 Missense_Mutation p.T3295I 0.32 benign(0.039) TCGA-EE-A29P-06 12 11461475 11461475 C T PRB4 Missense_Mutation p.G148R 0.36 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29P-06 12 122685332 122685332 G A LRRC43 Missense_Mutation p.E554K 0.11 deleterious(0) benign(0.277) TCGA-EE-A29P-06 12 123214635 123214635 C T HCAR1 Silent p.G84G 0.20 TCGA-EE-A29P-06 12 124401149 124401149 G A DNAH10 Missense_Mutation p.G3505E 0.46 probably_damaging(0.976) TCGA-EE-A29P-06 12 125834404 125834404 G A TMEM132B Silent p.T153T 0.18 TCGA-EE-A29P-06 12 2721143 2721143 G A CACNA1C Silent p.V1284V 0.22 TCGA-EE-A29P-06 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A29P-06 12 6925279 6925279 C T CD4 Missense_Mutation p.S222F 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29P-06 12 6927668 6927668 G C CD4 Missense_Mutation p.G413A 0.10 tolerated(0.11) probably_damaging(0.94) TCGA-EE-A29P-06 12 80771790 80771790 C T OTOGL Missense_Mutation p.L2333F 0.42 tolerated(0.32) benign(0.01) TCGA-EE-A29P-06 12 9317861 9317861 A G PZP Silent p.S787S 0.23 TCGA-EE-A29P-06 12 9907752 9907752 A G CD69 Missense_Mutation p.F98S 0.42 tolerated(0.09) benign(0.088) TCGA-EE-A29P-06 13 109793613 109793613 C T MYO16 Missense_Mutation p.P1663S 0.14 deleterious_low_confidence(0.04) benign(0.293) TCGA-EE-A29P-06 13 110839489 110839489 G A COL4A1 Missense_Mutation p.S575L 0.25 benign(0.029) TCGA-EE-A29P-06 13 110845189 110845189 G A COL4A1 Missense_Mutation p.P485S 0.30 benign(0.005) TCGA-EE-A29P-06 13 37011836 37011836 C T CCNA1 Missense_Mutation p.P123L 0.46 tolerated(0.39) benign(0.007) TCGA-EE-A29P-06 13 37679199 37679199 C T CSNK1A1L Silent p.T65T 0.21 TCGA-EE-A29P-06 13 50055134 50055134 C T SETDB2 Silent p.N358N 0.19 TCGA-EE-A29P-06 13 52604412 52604412 C T UTP14C Missense_Mutation p.A491V 0.20 tolerated(0.15) benign(0.02) TCGA-EE-A29P-06 13 52604413 52604413 C T UTP14C Silent p.A491A 0.20 TCGA-EE-A29P-06 13 52660478 52660478 C T NEK5 Missense_Mutation p.E472K 0.39 tolerated(0.72) benign(0.038) TCGA-EE-A29P-06 14 102918804 102918804 C T TECPR2 Silent p.P1160P 0.48 TCGA-EE-A29P-06 14 105418538 105418538 C T AHNAK2 Missense_Mutation p.V1084M 0.29 possibly_damaging(0.891) TCGA-EE-A29P-06 14 105418539 105418539 C T AHNAK2 Silent p.K1083K 0.28 TCGA-EE-A29P-06 14 20249141 20249141 C T OR4M1 Silent p.F220F 0.34 TCGA-EE-A29P-06 14 21966533 21966533 G A TOX4 3'UTR 0.35 TCGA-EE-A29P-06 14 22433746 22433746 C T TRAV12-3 Missense_Mutation p.S4F 0.28 tolerated(0.71) unknown(0) TCGA-EE-A29P-06 14 31614085 31614085 A T HECTD1 Silent p.R853R 0.14 TCGA-EE-A29P-06 14 36096368 36096368 T G RALGAPA1 Missense_Mutation p.Q1756P 0.29 tolerated(0.12) possibly_damaging(0.854) TCGA-EE-A29P-06 14 38724535 38724535 G A CLEC14A Silent p.I231I 0.18 TCGA-EE-A29P-06 14 52481898 52481898 G A NID2 Nonsense_Mutation p.Q1042* 0.15 TCGA-EE-A29P-06 14 63417236 63417236 G A KCNH5 Silent p.L328L 0.38 TCGA-EE-A29P-06 14 73566103 73566103 C T RBM25 Missense_Mutation p.P249S 0.39 benign(0.125) TCGA-EE-A29P-06 14 73730438 73730438 C T PAPLN Missense_Mutation p.P910S 0.36 tolerated(0.17) benign(0.034) TCGA-EE-A29P-06 14 77255601 77255601 G A ANGEL1 Silent p.A661A 0.37 TCGA-EE-A29P-06 14 90651046 90651046 C T KCNK13 Missense_Mutation p.S309L 0.44 tolerated(0.44) benign(0.002) TCGA-EE-A29P-06 14 94048633 94048633 C T UNC79 Missense_Mutation p.P739S 0.18 tolerated_low_confidence(0.42) benign(0.004) TCGA-EE-A29P-06 15 101906451 101906451 G A PCSK6 Missense_Mutation p.T602I 0.33 tolerated(0.4) possibly_damaging(0.55) TCGA-EE-A29P-06 15 44029095 44029095 G A RNU6-354P 5'Flank 0.11 TCGA-EE-A29P-06 15 75131034 75131034 G A ULK3 Missense_Mutation p.S351F 0.47 deleterious(0.01) benign(0.332) TCGA-EE-A29P-06 15 75798234 75798234 G A PTPN9 Silent p.F250F 0.21 TCGA-EE-A29P-06 15 92459295 92459295 T C SLCO3A1 Missense_Mutation p.F85L 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29P-06 16 10524938 10524938 C T ATF7IP2 Missense_Mutation p.S154F 0.22 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A29P-06 16 10641503 10641503 G A EMP2 5'UTR 0.48 TCGA-EE-A29P-06 16 10641504 10641504 G A EMP2 5'UTR 0.43 TCGA-EE-A29P-06 16 15835634 15835634 C T MYH11 Missense_Mutation p.E886K 0.24 benign(0.017) TCGA-EE-A29P-06 16 19058495 19058495 G A TMC7 Nonsense_Mutation p.W555* 0.28 TCGA-EE-A29P-06 16 20648710 20648710 G A ACSM1 Missense_Mutation p.P394S 0.23 tolerated(0.08) benign(0.038) TCGA-EE-A29P-06 16 20994192 20994192 C T DNAH3 Silent p.G2570G 0.38 TCGA-EE-A29P-06 16 20996554 20996554 C T DNAH3 Missense_Mutation p.D2504N 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 16 21994579 21994579 C T UQCRC2 3'UTR 0.40 TCGA-EE-A29P-06 16 28618277 28618277 C T SULT1A1 Missense_Mutation p.G165E 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A29P-06 16 3100339 3100339 G A MMP25 Missense_Mutation p.M151I 0.36 tolerated(0.36) benign(0.003) TCGA-EE-A29P-06 16 4862212 4862212 G A GLYR1 Missense_Mutation p.P386L 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A29P-06 16 66839687 66839687 G A NAE1 Silent p.F496F 0.33 TCGA-EE-A29P-06 16 81167204 81167204 C T PKD1L2 RNA 0.35 TCGA-EE-A29P-06 16 83712035 83712035 G A CDH13 Missense_Mutation p.D550N 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29P-06 17 10312747 10312747 C T MYH8 Silent p.L582L 0.56 TCGA-EE-A29P-06 17 10355546 10355546 G A MYH4 Silent p.I1150I 0.46 TCGA-EE-A29P-06 17 21215555 21215555 C T MAP2K3 Silent p.D292D 0.25 TCGA-EE-A29P-06 17 21215556 21215556 C T MAP2K3 Missense_Mutation p.R293C 0.26 tolerated(0.07) benign(0.086) TCGA-EE-A29P-06 17 30207772 30207772 G A UTP6 Missense_Mutation p.L263F 0.12 deleterious(0) probably_damaging(0.95) TCGA-EE-A29P-06 17 31350947 31350947 C T ASIC2 Silent p.V427V 0.48 TCGA-EE-A29P-06 17 33507649 33507649 G A UNC45B Missense_Mutation p.R778Q 0.12 tolerated(0.06) probably_damaging(0.989) TCGA-EE-A29P-06 17 38712013 38712013 C T CCR7 Missense_Mutation p.D40N 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A29P-06 17 38712014 38712014 C T CCR7 Silent p.V39V 0.11 TCGA-EE-A29P-06 17 41020359 41020359 G A AOC4P RNA 0.33 TCGA-EE-A29P-06 17 56382809 56382809 G A BZRAP1 Missense_Mutation p.P1791L 0.53 deleterious(0) possibly_damaging(0.864) TCGA-EE-A29P-06 17 56382810 56382810 G A BZRAP1 Missense_Mutation p.P1791S 0.53 tolerated(0.21) benign(0.192) TCGA-EE-A29P-06 17 58308901 58308901 G A USP32 Intron 0.44 TCGA-EE-A29P-06 17 60802403 60802403 C A MARCH10 Missense_Mutation p.G667V 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A29P-06 17 61958457 61958457 G A GH2 Nonsense_Mutation p.Q75* 0.07 TCGA-EE-A29P-06 17 704267 704267 C T NXN Silent p.V410V 0.61 TCGA-EE-A29P-06 18 29101112 29101112 A C DSG2 Missense_Mutation p.L143F 0.13 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A29P-06 18 30969504 30969504 C T CCDC178 Missense_Mutation p.G70R 0.09 tolerated(0.09) possibly_damaging(0.617) TCGA-EE-A29P-06 18 42530081 42530081 C T SETBP1 Missense_Mutation p.S259F 0.21 tolerated(0.09) possibly_damaging(0.902) TCGA-EE-A29P-06 18 50705432 50705432 G A DCC Missense_Mutation p.E507K 0.29 tolerated(0.54) benign(0.094) TCGA-EE-A29P-06 18 52551645 52551645 C T RAB27B Silent p.F107F 0.31 TCGA-EE-A29P-06 18 56202246 56202246 C T ALPK2 Missense_Mutation p.E1725K 0.24 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29P-06 18 56203078 56203078 G A ALPK2 Silent p.I1447I 0.37 TCGA-EE-A29P-06 18 66721290 66721290 C T CCDC102B Silent p.I486I 0.24 TCGA-EE-A29P-06 19 10432267 10432267 G A RAVER1 Silent p.L418L 0.23 TCGA-EE-A29P-06 19 12298662 12298662 C T ZNF136 Missense_Mutation p.S490F 0.29 tolerated(0.15) possibly_damaging(0.74) TCGA-EE-A29P-06 19 13184817 13184817 C T NFIX Silent p.S265S 0.28 TCGA-EE-A29P-06 19 13418658 13418658 C T CACNA1A Missense_Mutation p.D642N 0.22 probably_damaging(0.982) TCGA-EE-A29P-06 19 15564263 15564263 G A RASAL3 Silent p.L775L 0.33 TCGA-EE-A29P-06 19 15989716 15989716 C T CYP4F2 Silent p.A476A 0.20 TCGA-EE-A29P-06 19 17338717 17338717 G A OCEL1 Missense_Mutation p.G174E 0.30 tolerated(0.15) benign(0.018) TCGA-EE-A29P-06 19 22157610 22157610 C T ZNF208 Splice_Site p.X76_splice 0.44 TCGA-EE-A29P-06 19 22605023 22605023 G A ZNF98 Missense_Mutation p.P2S 0.15 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A29P-06 19 33623137 33623137 C T WDR88 Missense_Mutation p.P21L 0.16 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A29P-06 19 36387124 36387124 G A NFKBID Silent p.F151F 0.31 TCGA-EE-A29P-06 19 38991538 38991538 C T RYR1 Missense_Mutation p.R2508C 0.41 benign(0.44) TCGA-EE-A29P-06 19 41350574 41350574 T C CYP2A6 Missense_Mutation p.Q422R 0.22 possibly_damaging(0.573) TCGA-EE-A29P-06 19 41825596 41825596 C T CCDC97 Missense_Mutation p.P207L 0.14 tolerated(0.24) benign(0.003) TCGA-EE-A29P-06 19 43441196 43441196 C T PSG7 Silent p.Q11Q 0.38 TCGA-EE-A29P-06 19 44130962 44130962 C T CADM4 Nonsense_Mutation p.W158* 0.31 TCGA-EE-A29P-06 19 45973750 45973750 C T FOSB Intron 0.42 TCGA-EE-A29P-06 19 47844445 47844445 C T C5AR2 Missense_Mutation p.A130V 0.28 deleterious(0.02) benign(0.018) TCGA-EE-A29P-06 19 47986621 47986621 C T KPTN Missense_Mutation p.G109S 0.11 tolerated(0.36) benign(0.108) TCGA-EE-A29P-06 19 52034107 52034107 G - SIGLEC6 Frame_Shift_Del p.I179Sfs*39 0.18 TCGA-EE-A29P-06 19 53571608 53571608 G A ZNF160 Missense_Mutation p.H727Y 0.21 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29P-06 19 54185498 54185498 G A MIR520F RNA 0.32 TCGA-EE-A29P-06 19 54545422 54545422 C T VSTM1 Splice_Site p.X172_splice 0.24 TCGA-EE-A29P-06 19 56466505 56466505 G A NLRP8 Missense_Mutation p.E361K 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A29P-06 19 58485503 58485503 A G C19orf18 Silent p.L64L 0.27 TCGA-EE-A29P-06 19 58718259 58718259 C T ZNF274 Silent p.P143P 0.29 TCGA-EE-A29P-06 19 7964105 7964105 C A LRRC8E Missense_Mutation p.A233D 0.24 deleterious(0) probably_damaging(0.991) TCGA-EE-A29P-06 19 9000207 9000207 G A MUC16 Missense_Mutation p.P13517L 0.29 probably_damaging(0.964) TCGA-EE-A29P-06 19 9048855 9048855 C G MUC16 Missense_Mutation p.V10926L 0.10 benign(0.007) TCGA-EE-A29P-06 19 9056855 9056855 C T MUC16 Silent p.Q10197Q 0.29 TCGA-EE-A29P-06 19 9060891 9060891 G A MUC16 Missense_Mutation p.P8852L 0.31 unknown(0) TCGA-EE-A29P-06 19 9067222 9067222 G A MUC16 Missense_Mutation p.P6742S 0.15 unknown(0) TCGA-EE-A29P-06 19 9085534 9085534 G A MUC16 Missense_Mutation p.S2094L 0.15 unknown(0) TCGA-EE-A29P-06 19 9578502 9578502 T C ZNF560 Missense_Mutation p.K374R 0.24 deleterious(0.01) benign(0.066) TCGA-EE-A29P-06 19 9801452 9801452 G A ZNF812 Missense_Mutation p.H243Y 0.26 deleterious(0.04) benign(0.022) TCGA-EE-A29P-06 1 103345354 103345354 C T COL11A1 Nonsense_Mutation p.W1720* 0.28 TCGA-EE-A29P-06 1 109839752 109839752 G T MYBPHL Missense_Mutation p.L164M 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 1 111857977 111857977 G A CHIA Missense_Mutation p.G134R 0.42 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A29P-06 1 117311214 117311214 C T CD2 Missense_Mutation p.R289C 0.25 deleterious(0.04) benign(0.105) TCGA-EE-A29P-06 1 120927157 120927157 C T FCGR1B Missense_Mutation p.E275K 0.15 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A29P-06 1 147380190 147380190 C T GJA8 Silent p.I36I 0.32 TCGA-EE-A29P-06 1 147380191 147380191 C T GJA8 Missense_Mutation p.L37F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 1 152081564 152081564 G A TCHH Missense_Mutation p.L1377F 0.52 unknown(0) TCGA-EE-A29P-06 1 153932900 153932900 G A SLC39A1 Missense_Mutation p.H217Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 1 155491015 155491015 G A ASH1L Missense_Mutation p.P99L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29P-06 1 155870363 155870363 G A RIT1 Missense_Mutation p.P176L 0.12 tolerated(0.05) probably_damaging(0.985) TCGA-EE-A29P-06 1 155870364 155870364 G A RIT1 Missense_Mutation p.P176S 0.12 tolerated(0.07) possibly_damaging(0.661) TCGA-EE-A29P-06 1 155979306 155979306 G A SSR2 3'UTR 0.20 TCGA-EE-A29P-06 1 1560564 1560564 C T MIB2 Silent p.L355L 0.17 TCGA-EE-A29P-06 1 157494241 157494241 G A FCRL5 Silent p.I689I 0.47 TCGA-EE-A29P-06 1 157804505 157804505 C T CD5L Missense_Mutation p.G137D 0.37 tolerated(0.4) benign(0) TCGA-EE-A29P-06 1 158323823 158323823 G A CD1E Silent p.G15G 0.32 TCGA-EE-A29P-06 1 158576414 158576414 C T OR10Z1 Silent p.F62F 0.13 TCGA-EE-A29P-06 1 158581126 158581126 C T SPTA1 Missense_Mutation p.M2396I 0.20 tolerated(0.11) benign(0.033) TCGA-EE-A29P-06 1 159779289 159779289 C T FCRL6 Silent p.S234S 0.26 TCGA-EE-A29P-06 1 160098511 160098511 G A ATP1A2 Missense_Mutation p.E363K 0.10 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A29P-06 1 16268534 16268534 C T ZBTB17 Missense_Mutation p.G781E 0.17 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-EE-A29P-06 1 16268535 16268535 C T ZBTB17 Missense_Mutation p.G781R 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A29P-06 1 16456733 16456733 T C EPHA2 Missense_Mutation p.D886G 0.28 tolerated(0.37) benign(0.263) TCGA-EE-A29P-06 1 169672429 169672429 C T SELL Missense_Mutation p.G320R 0.16 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A29P-06 1 171083326 171083326 C T FMO3 Missense_Mutation p.P336L 0.49 deleterious(0) probably_damaging(0.929) TCGA-EE-A29P-06 1 176563998 176563998 C A PAPPA2 Missense_Mutation p.R420S 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A29P-06 1 19184070 19184070 C T TAS1R2 Missense_Mutation p.E80K 0.40 deleterious(0) possibly_damaging(0.511) TCGA-EE-A29P-06 1 19437238 19437238 G A UBR4 Silent p.L3964L 0.15 TCGA-EE-A29P-06 1 215972273 215972273 C T USH2A Missense_Mutation p.G3312R 0.38 probably_damaging(0.999) TCGA-EE-A29P-06 1 220100441 220100441 G A SLC30A10 Missense_Mutation p.S216F 0.19 deleterious(0) probably_damaging(0.93) TCGA-EE-A29P-06 1 222696144 222696144 C T HHIPL2 Silent p.Q658Q 0.36 TCGA-EE-A29P-06 1 226413370 226413370 G A MIXL1 Missense_Mutation p.E186K 0.17 deleterious(0.02) benign(0.031) TCGA-EE-A29P-06 1 228879481 228879481 C T RHOU Silent p.F257F 0.23 TCGA-EE-A29P-06 1 236749560 236749560 T C HEATR1 Silent p.L636L 0.49 TCGA-EE-A29P-06 1 237789083 237789083 G C RYR2 Missense_Mutation p.E2049Q 0.46 benign(0.007) TCGA-EE-A29P-06 1 240370323 240370323 G A FMN2 Silent p.R737R 0.22 TCGA-EE-A29P-06 1 246811154 246811154 C T CNST Missense_Mutation p.L551F 0.18 tolerated(0.63) benign(0.356) TCGA-EE-A29P-06 1 247836167 247836167 G A OR13G1 Silent p.F59F 0.14 TCGA-EE-A29P-06 1 248343737 248343737 C T OR2M2 Silent p.I150I 0.54 TCGA-EE-A29P-06 1 26524240 26524240 G A CATSPER4 Missense_Mutation p.E175K 0.18 tolerated(0.69) benign(0.015) TCGA-EE-A29P-06 1 33583706 33583706 C T ADC Silent p.S411S 0.32 TCGA-EE-A29P-06 1 33583707 33583707 C T ADC Missense_Mutation p.R412W 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A29P-06 1 38351420 38351420 G A INPP5B Silent p.A403A 0.32 TCGA-EE-A29P-06 1 40703534 40703534 C T RLF Missense_Mutation p.P1054S 0.20 tolerated(0.8) benign(0.006) TCGA-EE-A29P-06 1 57258455 57258455 C T C1orf168 Missense_Mutation p.E11K 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29P-06 1 60366725 60366725 C T CYP2J2 Silent p.E414E 0.31 TCGA-EE-A29P-06 1 6155618 6155618 G A KCNAB2 Silent p.L294L 0.14 TCGA-EE-A29P-06 1 71318409 71318409 G A PTGER3 3'UTR 0.38 TCGA-EE-A29P-06 1 75037958 75037958 C T C1orf173 Missense_Mutation p.E1146K 0.31 deleterious(0.04) benign(0.382) TCGA-EE-A29P-06 1 75038026 75038026 C T C1orf173 Missense_Mutation p.G1123E 0.29 tolerated(1) benign(0.002) TCGA-EE-A29P-06 1 82409292 82409292 C T LPHN2 Missense_Mutation p.T346I 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 1 8390336 8390336 C T SLC45A1 Silent p.A261A 0.12 TCGA-EE-A29P-06 1 86961235 86961235 A G CLCA1 Missense_Mutation p.T664A 0.10 tolerated(0.89) benign(0) TCGA-EE-A29P-06 1 9211837 9211837 G A MIR34A 5'Flank 0.27 TCGA-EE-A29P-06 1 95310896 95310896 C T SLC44A3 Silent p.F316F 0.27 TCGA-EE-A29P-06 20 1162129 1162129 C T TMEM74B Missense_Mutation p.R45K 0.34 tolerated(0.19) benign(0.005) TCGA-EE-A29P-06 20 1600559 1600559 G A SIRPB1 Missense_Mutation p.P11L 0.15 deleterious(0) possibly_damaging(0.904) TCGA-EE-A29P-06 20 21142942 21142942 G A RP4-777D9.2 Intron 0.23 TCGA-EE-A29P-06 20 23065357 23065357 C T CD93 Silent p.G491G 0.18 TCGA-EE-A29P-06 20 23065358 23065358 C T CD93 Missense_Mutation p.G491E 0.16 tolerated(1) benign(0.01) TCGA-EE-A29P-06 20 31671662 31671662 C T BPIFB4 Missense_Mutation p.T220I 0.30 tolerated(0.12) probably_damaging(1) TCGA-EE-A29P-06 20 34022112 34022112 C T GDF5 Silent p.K367K 0.19 TCGA-EE-A29P-06 20 37546929 37546929 G A PPP1R16B Missense_Mutation p.G442R 0.36 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A29P-06 20 40735467 40735467 G A PTPRT Missense_Mutation p.R1117C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 20 41076885 41076885 G A PTPRT Missense_Mutation p.T512I 0.13 deleterious(0) possibly_damaging(0.661) TCGA-EE-A29P-06 20 43139984 43139984 G A SERINC3 Missense_Mutation p.L141F 0.22 tolerated(0.11) possibly_damaging(0.673) TCGA-EE-A29P-06 20 43139985 43139985 G A SERINC3 Silent p.A140A 0.20 TCGA-EE-A29P-06 20 44207873 44207873 C T WFDC8 Missense_Mutation p.R5Q 0.40 tolerated_low_confidence(0.5) benign(0.003) TCGA-EE-A29P-06 20 45354946 45354946 C T SLC2A10 Missense_Mutation p.S424F 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A29P-06 20 45839377 45839377 G A ZMYND8 3'Flank 0.40 TCGA-EE-A29P-06 21 10910313 10910313 G A TPTE Silent p.F481F 0.10 TCGA-EE-A29P-06 21 10920142 10920142 T C TPTE Missense_Mutation p.E371G 0.08 deleterious(0.01) possibly_damaging(0.869) TCGA-EE-A29P-06 21 41684189 41684189 C T DSCAM Silent p.T627T 0.24 TCGA-EE-A29P-06 22 18022561 18022561 C T CECR2 Missense_Mutation p.P889L 0.48 deleterious_low_confidence(0.02) benign(0.016) TCGA-EE-A29P-06 22 23135376 23135376 C T IGLV2-11 Missense_Mutation p.P80S 0.39 tolerated_low_confidence(0.2) benign(0.038) TCGA-EE-A29P-06 22 36960368 36960368 C T CACNG2 3'UTR 0.29 TCGA-EE-A29P-06 22 40757188 40757188 C T ADSL Intron 0.30 TCGA-EE-A29P-06 2 102641179 102641179 C T IL1R2 Intron 0.33 TCGA-EE-A29P-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.12 tolerated(0.11) benign(0.012) TCGA-EE-A29P-06 2 108488640 108488640 C T RGPD4 Missense_Mutation p.R1394C 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 2 108868844 108868844 T A SULT1C3 Missense_Mutation p.L66I 0.14 tolerated(0.1) benign(0.403) TCGA-EE-A29P-06 2 113737642 113737642 G A IL36G Missense_Mutation p.D73N 0.12 tolerated(0.89) benign(0.028) TCGA-EE-A29P-06 2 113820076 113820076 G A IL36RN Missense_Mutation p.S97N 0.36 tolerated(0.16) benign(0.002) TCGA-EE-A29P-06 2 113999231 113999231 G A PAX8 Missense_Mutation p.T225M 0.22 deleterious(0.04) benign(0.015) TCGA-EE-A29P-06 2 120373205 120373205 C T PCDP1 Missense_Mutation p.P444S 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29P-06 2 121740439 121740439 C T GLI2 Missense_Mutation p.R556C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 2 121995289 121995289 G A TFCP2L1 Silent p.L305L 0.26 TCGA-EE-A29P-06 2 121995290 121995290 G A TFCP2L1 Silent p.H304H 0.27 TCGA-EE-A29P-06 2 152426706 152426706 G A NEB Silent p.S5773S 0.36 TCGA-EE-A29P-06 2 166616016 166616016 G A GALNT3 Silent p.V301V 0.31 TCGA-EE-A29P-06 2 168101641 168101641 C T XIRP2 Missense_Mutation p.P1247S 0.28 benign(0.272) TCGA-EE-A29P-06 2 175260318 175260318 C T CIR1 Silent p.K11K 0.17 TCGA-EE-A29P-06 2 179542556 179542556 C T TTN Silent p.E11361E 0.21 TCGA-EE-A29P-06 2 179577224 179577224 G A TTN Missense_Mutation p.S9142L 0.25 TCGA-EE-A29P-06 2 179640923 179640923 G A TTN Missense_Mutation p.R1890C 0.15 TCGA-EE-A29P-06 2 179642222 179642222 C T TTN Missense_Mutation p.D1524N 0.28 TCGA-EE-A29P-06 2 180409647 180409647 G T ZNF385B Silent p.T101T 0.22 TCGA-EE-A29P-06 2 182396441 182396441 G A ITGA4 Missense_Mutation p.E908K 0.11 tolerated(0.05) possibly_damaging(0.559) TCGA-EE-A29P-06 2 182542991 182542991 C T NEUROD1 Silent p.Q199Q 0.18 TCGA-EE-A29P-06 2 202469393 202469393 C T ALS2CR11 Missense_Mutation p.D87N 0.16 deleterious(0.01) benign(0.402) TCGA-EE-A29P-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-EE-A29P-06 2 209302514 209302514 G A PTH2R Missense_Mutation p.G107R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 2 210888825 210888825 G A KANSL1L Missense_Mutation p.L889F 0.34 tolerated(0.55) benign(0.005) TCGA-EE-A29P-06 2 212587181 212587181 G A ERBB4 Nonsense_Mutation p.Q274* 0.30 TCGA-EE-A29P-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.13 deleterious(0) probably_damaging(0.954) TCGA-EE-A29P-06 2 220047114 220047114 C T FAM134A Silent p.S465S 0.20 TCGA-EE-A29P-06 2 229890460 229890460 G A PID1 Missense_Mutation p.A212V 0.20 tolerated(0.13) possibly_damaging(0.797) TCGA-EE-A29P-06 2 29072765 29072765 G A SPDYA Silent p.K300K 0.15 TCGA-EE-A29P-06 2 44528276 44528276 G A SLC3A1 Intron 0.32 TCGA-EE-A29P-06 2 64118256 64118256 A G UGP2 Silent p.G474G 0.21 TCGA-EE-A29P-06 2 65301568 65301568 C T CEP68 Intron 0.15 TCGA-EE-A29P-06 3 111312497 111312497 C T ZBED2 Silent p.V184V 0.35 TCGA-EE-A29P-06 3 11389359 11389359 C T ATG7 Silent p.G378G 0.49 TCGA-EE-A29P-06 3 120952497 120952497 G A STXBP5L Silent p.L382L 0.24 TCGA-EE-A29P-06 3 12225026 12225026 C T SYN2 RNA 0.39 TCGA-EE-A29P-06 3 148793736 148793736 G A HLTF Silent p.G109G 0.46 TCGA-EE-A29P-06 3 150645783 150645783 G A CLRN1 Silent p.F226F 0.16 TCGA-EE-A29P-06 3 151164727 151164727 C T IGSF10 Silent p.R1014R 0.33 TCGA-EE-A29P-06 3 155200041 155200041 G A PLCH1 Silent p.T1266T 0.11 TCGA-EE-A29P-06 3 161147242 161147242 C T RP11-3P17.4 RNA 0.41 TCGA-EE-A29P-06 3 16635245 16635245 C T DAZL Missense_Mutation p.E238K 0.26 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29P-06 3 167319957 167319957 G A WDR49 Silent p.F70F 0.12 TCGA-EE-A29P-06 3 168833529 168833529 G A MECOM Missense_Mutation p.P588S 0.17 tolerated(0.46) probably_damaging(0.999) TCGA-EE-A29P-06 3 170219037 170219037 G A SLC7A14 Silent p.F134F 0.28 TCGA-EE-A29P-06 3 172631500 172631500 A C SPATA16 Missense_Mutation p.L513R 0.15 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29P-06 3 178546031 178546031 C T KCNMB2 Missense_Mutation p.S98F 0.11 deleterious(0) possibly_damaging(0.476) TCGA-EE-A29P-06 3 184040934 184040934 G A EIF4G1 Missense_Mutation p.D672N 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 3 184922264 184922264 G A EHHADH Missense_Mutation p.P284S 0.28 tolerated(0.09) benign(0.3) TCGA-EE-A29P-06 3 186015888 186015888 G A DGKG Missense_Mutation p.T92M 0.27 tolerated(0.15) benign(0.003) TCGA-EE-A29P-06 3 194118415 194118415 A G GP5 Silent p.L199L 0.26 TCGA-EE-A29P-06 3 195610038 195610038 G A TNK2 Missense_Mutation p.P263L 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29P-06 3 36898673 36898673 G A TRANK1 Missense_Mutation p.S803F 0.28 deleterious(0.03) possibly_damaging(0.862) TCGA-EE-A29P-06 3 38938387 38938387 T G SCN11A Silent p.S784S 0.18 TCGA-EE-A29P-06 3 40353537 40353537 A G EIF1B 3'UTR 0.31 TCGA-EE-A29P-06 3 45804443 45804443 C T SLC6A20 Silent p.V475V 0.18 TCGA-EE-A29P-06 3 48669205 48669205 G A SLC26A6 Silent p.P260P 0.18 TCGA-EE-A29P-06 3 51864710 51864710 C T IQCF3 Nonsense_Mutation p.Q120* 0.31 TCGA-EE-A29P-06 3 52721361 52721361 G A GNL3 Missense_Mutation p.E58K 0.21 deleterious(0) probably_damaging(0.991) TCGA-EE-A29P-06 3 99643115 99643115 C T FILIP1L Silent p.K188K 0.07 TCGA-EE-A29P-06 4 100516025 100516025 T - MTTP Frame_Shift_Del p.C298* 0.25 TCGA-EE-A29P-06 4 120079242 120079242 C T MYOZ2 Silent p.A104A 0.24 TCGA-EE-A29P-06 4 126369700 126369700 C T FAT4 Missense_Mutation p.S2510F 0.39 probably_damaging(0.945) TCGA-EE-A29P-06 4 126412372 126412372 C T FAT4 Missense_Mutation p.R4799C 0.19 probably_damaging(0.996) TCGA-EE-A29P-06 4 13616102 13616102 T A BOD1L1 Missense_Mutation p.N298Y 0.33 possibly_damaging(0.907) TCGA-EE-A29P-06 4 141489767 141489767 G A UCP1 Silent p.V39V 0.43 TCGA-EE-A29P-06 4 155487751 155487751 G A FGB Silent p.Q139Q 0.20 TCGA-EE-A29P-06 4 155665867 155665867 C T LRAT Missense_Mutation p.S130F 0.21 tolerated(0.7) benign(0.385) TCGA-EE-A29P-06 4 156634438 156634438 G A GUCY1A3 Silent p.L425L 0.26 TCGA-EE-A29P-06 4 162508617 162508617 G A FSTL5 Silent p.F335F 0.42 TCGA-EE-A29P-06 4 164271499 164271499 C G NPY5R Missense_Mutation p.S25C 0.22 tolerated(0.09) benign(0.319) TCGA-EE-A29P-06 4 170028181 170028181 G A SH3RF1 Missense_Mutation p.S772F 0.13 deleterious(0.01) benign(0.006) TCGA-EE-A29P-06 4 187074901 187074901 C G FAM149A Missense_Mutation p.C63W 0.27 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A29P-06 4 25674773 25674773 C T SLC34A2 Silent p.L371L 0.31 TCGA-EE-A29P-06 4 38055922 38055922 C T TBC1D1 Silent p.T671T 0.27 TCGA-EE-A29P-06 4 43032468 43032468 C T GRXCR1 Nonsense_Mutation p.R262* 0.35 TCGA-EE-A29P-06 4 6860184 6860184 C T KIAA0232 Missense_Mutation p.P157S 0.22 tolerated(0.65) benign(0.053) TCGA-EE-A29P-06 4 70504997 70504997 C T UGT2A2 Missense_Mutation p.G121E 0.40 tolerated(0.8) benign(0.098) TCGA-EE-A29P-06 4 75937662 75937662 C T PARM1 Missense_Mutation p.S24L 0.48 deleterious(0) benign(0.372) TCGA-EE-A29P-06 4 79399128 79399128 G A FRAS1 Missense_Mutation p.E2671K 0.21 probably_damaging(0.967) TCGA-EE-A29P-06 4 89384699 89384699 C T HERC5 Silent p.S235S 0.13 TCGA-EE-A29P-06 4 959282 959282 G A DGKQ Nonsense_Mutation p.Q539* 0.45 TCGA-EE-A29P-06 5 114462242 114462242 T C TRIM36 Silent p.E715E 0.18 TCGA-EE-A29P-06 5 118969690 118969690 C T FAM170A Nonsense_Mutation p.Q83* 0.35 TCGA-EE-A29P-06 5 136448179 136448179 G A SPOCK1 Missense_Mutation p.P140L 0.20 deleterious(0.01) possibly_damaging(0.515) TCGA-EE-A29P-06 5 13776634 13776634 C T DNAH5 Missense_Mutation p.R3096Q 0.18 possibly_damaging(0.553) TCGA-EE-A29P-06 5 140182636 140182636 G A PCDHA3 Silent p.A618A 0.20 TCGA-EE-A29P-06 5 140516577 140516577 G A PCDHB5 Missense_Mutation p.E521K 0.14 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-EE-A29P-06 5 140564474 140564474 G A PCDHB16 3'UTR 0.19 TCGA-EE-A29P-06 5 140573103 140573103 C T PCDHB10 Silent p.G326G 0.21 TCGA-EE-A29P-06 5 140573667 140573667 C T PCDHB10 Silent p.F514F 0.11 TCGA-EE-A29P-06 5 140751506 140751506 C T PCDHGB3 Silent p.F515F 0.26 TCGA-EE-A29P-06 5 140799340 140799340 C T PCDHGB7 Silent p.V638V 0.37 TCGA-EE-A29P-06 5 143853596 143853596 C T KCTD16 Silent p.F402F 0.10 TCGA-EE-A29P-06 5 149931403 149931403 G A NDST1 Missense_Mutation p.E839K 0.14 tolerated(0.12) benign(0.358) TCGA-EE-A29P-06 5 150701699 150701699 T C SLC36A2 Missense_Mutation p.E363G 0.35 tolerated(0.07) benign(0.17) TCGA-EE-A29P-06 5 154173508 154173508 C T LARP1 Silent p.G262G 0.53 TCGA-EE-A29P-06 5 157008 157008 C T PLEKHG4B Silent p.L467L 0.24 TCGA-EE-A29P-06 5 167631411 167631411 C T TENM2 Silent p.F1203F 0.47 TCGA-EE-A29P-06 5 58489357 58489357 C T PDE4D Missense_Mutation p.G218E 0.26 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A29P-06 5 61779893 61779893 C T IPO11 Missense_Mutation p.P400S 0.11 tolerated(0.55) benign(0.01) TCGA-EE-A29P-06 5 71411610 71411610 C T MAP1B Silent p.F90F 0.07 TCGA-EE-A29P-06 5 71756238 71756238 C T ZNF366 Silent p.G362G 0.17 TCGA-EE-A29P-06 5 75587119 75587119 G A SV2C Missense_Mutation p.R404K 0.17 tolerated(0.3) benign(0.001) TCGA-EE-A29P-06 5 89990343 89990343 C T GPR98 Silent p.S2590S 0.08 TCGA-EE-A29P-06 5 94275821 94275821 G A MCTP1 Silent p.I380I 0.10 TCGA-EE-A29P-06 6 105563561 105563561 G A BVES Missense_Mutation p.H320Y 0.63 tolerated(0.41) benign(0) TCGA-EE-A29P-06 6 126332563 126332563 C T TRMT11 Missense_Mutation p.P309S 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A29P-06 6 150385816 150385816 G A ULBP3 Missense_Mutation p.P221L 0.56 tolerated(0.19) benign(0.008) TCGA-EE-A29P-06 6 28542663 28542663 C T SCAND3 Missense_Mutation p.E607K 0.41 deleterious_low_confidence(0.05) benign(0.025) TCGA-EE-A29P-06 6 29627428 29627428 G A MOG Missense_Mutation p.E141K 0.32 deleterious(0) benign(0.332) TCGA-EE-A29P-06 6 31560506 31560506 G A NCR3 5'UTR 0.38 TCGA-EE-A29P-06 6 31636405 31636405 C T CSNK2B-LY6G5B-1181 Missense_Mutation p.L89F 0.22 deleterious(0) probably_damaging(0.974) TCGA-EE-A29P-06 6 32037516 32037516 C T TNXB Missense_Mutation p.G1801S 0.43 probably_damaging(0.998) TCGA-EE-A29P-06 6 32261093 32261093 C T C6orf10 Missense_Mutation p.G453R 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A29P-06 6 35466083 35466083 G A TULP1 3'UTR 0.52 TCGA-EE-A29P-06 6 49408038 49408038 G A MUT Missense_Mutation p.R613C 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29P-06 6 69653823 69653823 G A BAI3 Missense_Mutation p.G378R 0.56 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29P-06 6 73904810 73904810 G A KCNQ5 Silent p.K843K 0.41 TCGA-EE-A29P-06 6 73904811 73904811 G A KCNQ5 Missense_Mutation p.D844N 0.42 tolerated_low_confidence(0.18) possibly_damaging(0.773) TCGA-EE-A29P-06 6 84366578 84366578 G A SNAP91 Missense_Mutation p.P185S 0.61 tolerated(0.21) unknown(0) TCGA-EE-A29P-06 6 97246563 97246563 A T GPR63 Missense_Mutation p.F349I 0.40 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A29P-06 7 100281648 100281648 G A GIGYF1 Silent p.P621P 0.42 TCGA-EE-A29P-06 7 112424596 112424596 G A TMEM168 Silent p.S95S 0.33 TCGA-EE-A29P-06 7 120907270 120907270 G A CPED1 Missense_Mutation p.E879K 0.18 deleterious(0.01) benign(0.103) TCGA-EE-A29P-06 7 131913112 131913112 T A PLXNA4 Missense_Mutation p.N574I 0.10 tolerated(0.13) benign(0.265) TCGA-EE-A29P-06 7 131913184 131913184 C T PLXNA4 Missense_Mutation p.R550K 0.16 tolerated(0.25) probably_damaging(0.991) TCGA-EE-A29P-06 7 137801436 137801436 C T AKR1D1 3'UTR 0.36 TCGA-EE-A29P-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.24 deleterious(0) probably_damaging(0.967) TCGA-EE-A29P-06 7 141619403 141619403 C T OR9A4 Missense_Mutation p.S243F 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 7 141736006 141736006 C T MGAM Missense_Mutation p.P666L 0.14 deleterious(0) benign(0.044) TCGA-EE-A29P-06 7 142143909 142143909 G A TRBV6-7 Silent p.F29F 0.16 TCGA-EE-A29P-06 7 142499826 142499826 C T TRBC2 Silent p.L148L 0.30 TCGA-EE-A29P-06 7 143175685 143175685 C T TAS2R41 Silent p.L240L 0.24 TCGA-EE-A29P-06 7 146997268 146997268 C T CNTNAP2 Missense_Mutation p.R462C 0.33 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A29P-06 7 150034155 150034155 G A LRRC61 Missense_Mutation p.G69S 0.10 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A29P-06 7 20782528 20782528 G A ABCB5 Missense_Mutation p.R1018Q 0.23 tolerated(0.27) benign(0.022) TCGA-EE-A29P-06 7 30951842 30951842 C T AQP1 Silent p.I106I 0.28 TCGA-EE-A29P-06 7 47869151 47869151 G A PKD1L1 Missense_Mutation p.H2203Y 0.20 tolerated(0.25) benign(0.423) TCGA-EE-A29P-06 7 6078276 6078276 G A EIF2AK1 Silent p.I382I 0.24 TCGA-EE-A29P-06 7 66104188 66104188 C T KCTD7 Missense_Mutation p.P280L 0.23 tolerated(0.55) benign(0.258) TCGA-EE-A29P-06 7 70228046 70228046 G A AUTS2 Silent p.T311T 0.24 TCGA-EE-A29P-06 7 72657681 72657681 G A GTF2IRD2P1 RNA 0.29 TCGA-EE-A29P-06 7 81600063 81600063 A C CACNA2D1 Intron 0.18 TCGA-EE-A29P-06 7 82546172 82546172 G A PCLO Silent p.T3710T 0.36 TCGA-EE-A29P-06 7 83689791 83689791 G A SEMA3A Silent p.S179S 0.38 TCGA-EE-A29P-06 7 882989 882989 G A SUN1 Missense_Mutation p.A164T 0.30 tolerated(0.55) benign(0.066) TCGA-EE-A29P-06 7 92734749 92734749 C G SAMD9 Missense_Mutation p.R221P 0.09 deleterious(0) possibly_damaging(0.883) TCGA-EE-A29P-06 8 104922429 104922429 G A RIMS2 Silent p.L564L 0.27 TCGA-EE-A29P-06 8 144239719 144239719 G A LY6H Missense_Mutation p.A145V 0.39 tolerated(0.1) unknown(0) TCGA-EE-A29P-06 8 25340941 25340941 T C CDCA2 Silent p.D353D 0.52 TCGA-EE-A29P-06 8 27321275 27321275 C T CHRNA2 Missense_Mutation p.G229S 0.11 tolerated(0.13) probably_damaging(1) TCGA-EE-A29P-06 8 3565960 3565960 C T CSMD1 Missense_Mutation p.D329N 0.22 benign(0.244) TCGA-EE-A29P-06 8 53079421 53079421 G A ST18 Missense_Mutation p.P399S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29P-06 8 55533884 55533884 G A RP1 Missense_Mutation p.A120T 0.28 deleterious(0) possibly_damaging(0.77) TCGA-EE-A29P-06 8 55539179 55539179 C T RP1 Nonsense_Mutation p.Q913* 0.26 TCGA-EE-A29P-06 8 69058471 69058471 G A PREX2 Missense_Mutation p.G1372E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29P-06 8 79710399 79710399 G A IL7 Silent p.L19L 0.23 TCGA-EE-A29P-06 8 89128865 89128865 C T MMP16 Silent p.R318R 0.24 TCGA-EE-A29P-06 9 111618260 111618260 G A ACTL7B 5'UTR 0.67 TCGA-EE-A29P-06 9 113431136 113431136 C T MUSK 5'UTR 0.41 TCGA-EE-A29P-06 9 140777324 140777324 C T CACNA1B Silent p.V173V 0.21 TCGA-EE-A29P-06 9 21141108 21141108 C T IFNW1 Silent p.L154L 0.31 TCGA-EE-A29P-06 9 21217122 21217122 G A IFNA16 Silent p.F61F 0.42 TCGA-EE-A29P-06 9 26935166 26935166 C T PLAA Missense_Mutation p.G63D 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29P-06 9 88307670 88307670 C T AGTPBP1 Missense_Mutation p.E31K 0.26 deleterious(0.03) benign(0.009) TCGA-EE-A29P-06 X 105450353 105450353 C T MUM1L1 Missense_Mutation p.P310S 0.54 tolerated(0.5) benign(0.011) TCGA-EE-A29P-06 X 107431209 107431209 C T COL4A6 Missense_Mutation p.E547K 0.38 possibly_damaging(0.908) TCGA-EE-A29P-06 X 123870877 123870877 T C TENM1 Missense_Mutation p.T236A 0.11 tolerated_low_confidence(1) benign(0.048) TCGA-EE-A29P-06 X 130416470 130416470 C T IGSF1 Nonsense_Mutation p.W398* 0.43 TCGA-EE-A29P-06 X 132162238 132162238 A C USP26 Missense_Mutation p.L4R 0.24 deleterious(0.05) possibly_damaging(0.59) TCGA-EE-A29P-06 X 138727781 138727781 C T MCF2 Silent p.L59L 0.15 TCGA-EE-A29P-06 X 142596750 142596750 C T SPANXN3 Missense_Mutation p.G107E 0.36 tolerated_low_confidence(0.08) benign(0.007) TCGA-EE-A29P-06 X 142967308 142967308 C T UBE2NL Missense_Mutation p.H36Y 0.37 tolerated(0.13) benign(0.04) TCGA-EE-A29P-06 X 151283910 151283910 C T RP11-1007I13.4 RNA 0.40 TCGA-EE-A29P-06 X 151303172 151303172 C T MAGEA10 Silent p.R307R 0.41 TCGA-EE-A29P-06 X 152100264 152100264 C T ZNF185 Silent p.L321L 0.32 TCGA-EE-A29P-06 X 152100265 152100265 C T ZNF185 Nonsense_Mutation p.Q322* 0.33 TCGA-EE-A29P-06 X 152939616 152939616 G A PNCK Silent p.F5F 0.11 TCGA-EE-A29P-06 X 153760655 153760655 T A G6PD Missense_Mutation p.Y467F 0.41 deleterious(0) probably_damaging(0.986) TCGA-EE-A29P-06 X 17710501 17710501 C T NHS Silent p.P255P 0.28 TCGA-EE-A29P-06 X 37027900 37027900 C T FAM47C Missense_Mutation p.H473Y 0.45 tolerated_low_confidence(0.5) benign(0.138) TCGA-EE-A29P-06 X 50129463 50129463 G A DGKK RNA 0.39 TCGA-EE-A29P-06 X 50351041 50351041 G A SHROOM4 Missense_Mutation p.S1034L 0.50 tolerated(0.12) benign(0.001) TCGA-EE-A29P-06 X 5811688 5811688 G A NLGN4X Missense_Mutation p.P541S 0.43 deleterious(0.03) benign(0.253) TCGA-EE-A29P-06 X 83400549 83400549 C T RPS6KA6 Silent p.G146G 0.21 TCGA-EE-A29Q-06 10 101163500 101163500 G A GOT1 Silent p.S258S 0.38 TCGA-EE-A29Q-06 10 101643911 101643911 G A DNMBP Missense_Mutation p.P1285L 0.37 deleterious(0) probably_damaging(0.954) TCGA-EE-A29Q-06 10 104629931 104629931 G T AS3MT Nonsense_Mutation p.E45* 0.24 TCGA-EE-A29Q-06 10 105657473 105657473 G A OBFC1 Missense_Mutation p.P196S 0.38 tolerated(0.24) benign(0.217) TCGA-EE-A29Q-06 10 124361480 124361480 G A DMBT1 Missense_Mutation p.A1171T 0.41 deleterious(0) unknown(0) TCGA-EE-A29Q-06 10 17362798 17362798 C T ST8SIA6 3'UTR 0.48 TCGA-EE-A29Q-06 10 26490216 26490216 G A MYO3A Missense_Mutation p.R1523Q 0.46 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-EE-A29Q-06 10 26802512 26802512 G A APBB1IP Missense_Mutation p.D246N 0.48 tolerated(0.88) benign(0.086) TCGA-EE-A29Q-06 10 27964468 27964468 C T MKX Missense_Mutation p.G285E 0.30 tolerated(0.19) benign(0.1) TCGA-EE-A29Q-06 10 49654505 49654505 C T ARHGAP22 Missense_Mutation p.E692K 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 10 70405958 70405958 C T TET1 Missense_Mutation p.R1158W 0.36 deleterious(0) probably_damaging(0.983) TCGA-EE-A29Q-06 10 72358609 72358609 C T PRF1 Missense_Mutation p.A290T 0.33 tolerated(0.68) benign(0.006) TCGA-EE-A29Q-06 10 73206141 73206141 A G CDH23 Missense_Mutation p.D45G 0.23 deleterious(0.05) possibly_damaging(0.905) TCGA-EE-A29Q-06 10 78669808 78669808 G A KCNMA1 Silent p.D1004D 0.33 TCGA-EE-A29Q-06 10 92509229 92509229 C T HTR7 Nonsense_Mutation p.W221* 0.30 TCGA-EE-A29Q-06 10 94715367 94715367 C T EXOC6 Silent p.L557L 0.36 TCGA-EE-A29Q-06 10 97402770 97402770 G A ALDH18A1 Silent p.R94R 0.49 TCGA-EE-A29Q-06 10 98807541 98807541 G A SLIT1 Missense_Mutation p.P514S 0.45 deleterious(0.01) possibly_damaging(0.637) TCGA-EE-A29Q-06 11 100141825 100141825 C T CNTN5 Silent p.V722V 0.47 TCGA-EE-A29Q-06 11 102195665 102195665 C T BIRC3 Missense_Mutation p.P142L 0.61 deleterious(0.01) benign(0.021) TCGA-EE-A29Q-06 11 113651137 113651137 C T CLDN25 Missense_Mutation p.S207F 0.15 tolerated(0.59) benign(0.003) TCGA-EE-A29Q-06 11 113651138 113651138 C T CLDN25 Silent p.S207S 0.15 TCGA-EE-A29Q-06 11 123886905 123886905 C T OR10G4 Silent p.G208G 0.68 TCGA-EE-A29Q-06 11 16007843 16007843 G A SOX6 Missense_Mutation p.T677I 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 11 17158169 17158169 G A PIK3C2A Nonsense_Mutation p.Q570* 0.71 TCGA-EE-A29Q-06 11 35492184 35492184 A G PAMR1 Missense_Mutation p.F226S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 11 35827965 35827965 C T TRIM44 3'UTR 0.74 TCGA-EE-A29Q-06 11 3661163 3661163 G A ART5 Missense_Mutation p.R166C 0.41 tolerated(0.05) benign(0.336) TCGA-EE-A29Q-06 11 4626753 4626753 C T TRIM68 5'UTR 0.69 TCGA-EE-A29Q-06 11 4825289 4825289 G A OR52R1 Missense_Mutation p.H108Y 0.15 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A29Q-06 11 4842967 4842967 C T OR51F2 Silent p.L118L 0.60 TCGA-EE-A29Q-06 11 55339905 55339905 C T OR4C16 Missense_Mutation p.S101L 0.62 tolerated(0.06) benign(0.094) TCGA-EE-A29Q-06 11 55578951 55578951 G A OR5L1 Silent p.K3K 0.57 TCGA-EE-A29Q-06 11 60885660 60885660 G A CD5 Silent p.R36R 0.65 TCGA-EE-A29Q-06 11 62292274 62292274 A G AHNAK Silent p.P3205P 0.59 TCGA-EE-A29Q-06 11 64854470 64854470 C T ZFPL1 Silent p.P184P 0.50 TCGA-EE-A29Q-06 11 64854471 64854471 C T ZFPL1 Missense_Mutation p.R185W 0.50 deleterious(0.02) possibly_damaging(0.471) TCGA-EE-A29Q-06 11 65108974 65108974 C T DPF2 Missense_Mutation p.P136S 0.58 tolerated(0.89) benign(0.001) TCGA-EE-A29Q-06 11 66192366 66192366 G A NPAS4 Missense_Mutation p.D669N 0.18 tolerated(0.57) benign(0.001) TCGA-EE-A29Q-06 11 68177584 68177584 C T LRP5 Missense_Mutation p.S765L 0.52 deleterious(0.01) possibly_damaging(0.531) TCGA-EE-A29Q-06 11 68312311 68312311 C T PPP6R3 Missense_Mutation p.P78L 0.42 deleterious(0) benign(0.024) TCGA-EE-A29Q-06 11 74880730 74880730 C T SLCO2B1 Silent p.T234T 0.09 TCGA-EE-A29Q-06 11 76909607 76909607 G A MYO7A Silent p.E1503E 0.17 TCGA-EE-A29Q-06 11 7961019 7961019 A G OR10A3 Missense_Mutation p.F17L 0.69 tolerated(0.08) benign(0.044) TCGA-EE-A29Q-06 12 101510498 101510498 G A ANO4 Missense_Mutation p.R796Q 0.49 tolerated(0.63) benign(0.065) TCGA-EE-A29Q-06 12 104157375 104157375 G A STAB2 Missense_Mutation p.D2532N 0.59 deleterious(0.04) benign(0.03) TCGA-EE-A29Q-06 12 108685628 108685628 C T CMKLR1 Missense_Mutation p.G371D 0.14 tolerated_low_confidence(0.11) benign(0.024) TCGA-EE-A29Q-06 12 108685629 108685629 C T CMKLR1 Missense_Mutation p.G371S 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A29Q-06 12 110784071 110784071 C T ATP2A2 Silent p.P975P 0.50 TCGA-EE-A29Q-06 12 11422549 11422549 A G PRB3 Silent p.L19L 0.11 TCGA-EE-A29Q-06 12 11422568 11422568 G T PRB3 Silent p.A12A 0.12 TCGA-EE-A29Q-06 12 117655959 117655959 C T NOS1 Missense_Mutation p.R1428Q 0.56 deleterious(0) probably_damaging(0.99) TCGA-EE-A29Q-06 12 119942892 119942892 C T CCDC60 Missense_Mutation p.P223S 0.51 deleterious(0.04) probably_damaging(1) TCGA-EE-A29Q-06 12 124252206 124252206 C G DNAH10 Missense_Mutation p.Q29E 0.42 benign(0) TCGA-EE-A29Q-06 12 124371734 124371734 C T DNAH10 Missense_Mutation p.R2839W 0.60 probably_damaging(1) TCGA-EE-A29Q-06 12 126138151 126138151 C T TMEM132B Missense_Mutation p.S711L 0.65 deleterious(0.02) possibly_damaging(0.642) TCGA-EE-A29Q-06 12 130919365 130919365 C T RIMBP2 Missense_Mutation p.E706K 0.43 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A29Q-06 12 130926407 130926407 G A RIMBP2 Missense_Mutation p.S480F 0.26 deleterious(0) possibly_damaging(0.908) TCGA-EE-A29Q-06 12 132682434 132682434 G A GALNT9 Missense_Mutation p.S157F 0.68 deleterious(0.01) possibly_damaging(0.547) TCGA-EE-A29Q-06 12 14829831 14829831 C T GUCY2C Missense_Mutation p.G302E 0.68 tolerated(1) benign(0.005) TCGA-EE-A29Q-06 12 14940099 14940099 G A WBP11 Missense_Mutation p.A609V 0.17 tolerated(0.14) probably_damaging(0.957) TCGA-EE-A29Q-06 12 49957222 49957222 G A MCRS1 Missense_Mutation p.S235L 0.46 deleterious(0.02) possibly_damaging(0.633) TCGA-EE-A29Q-06 12 51686091 51686091 G A BIN2 Nonsense_Mutation p.R267* 0.54 TCGA-EE-A29Q-06 12 54912444 54912444 G T NCKAP1L Missense_Mutation p.V450L 0.63 tolerated(0.2) benign(0.405) TCGA-EE-A29Q-06 12 5541455 5541455 C T NTF3 5'UTR 0.17 TCGA-EE-A29Q-06 12 6127715 6127715 G A VWF Silent p.I1623I 0.19 TCGA-EE-A29Q-06 12 72969051 72969051 T C TRHDE Silent p.T671T 0.62 TCGA-EE-A29Q-06 12 93894980 93894980 C T MRPL42 Missense_Mutation p.P138S 0.50 tolerated(0.08) benign(0.394) TCGA-EE-A29Q-06 13 107822868 107822868 C T FAM155A Missense_Mutation p.E452K 0.48 deleterious(0) benign(0.107) TCGA-EE-A29Q-06 13 23909148 23909148 A - SACS Frame_Shift_Del p.L2956* 0.41 TCGA-EE-A29Q-06 13 27256852 27256852 G A WASF3 Silent p.Q364Q 0.13 TCGA-EE-A29Q-06 13 39265763 39265763 G A FREM2 Missense_Mutation p.G1428R 0.76 tolerated(0.12) probably_damaging(0.963) TCGA-EE-A29Q-06 13 52639700 52639700 C T NEK5 Nonsense_Mutation p.W657* 0.78 TCGA-EE-A29Q-06 13 78477656 78477657 - A EDNRB Frame_Shift_Ins p.S281Efs*8 0.15 TCGA-EE-A29Q-06 13 99042343 99042343 C T FARP1 Missense_Mutation p.L330F 0.67 tolerated(0.36) probably_damaging(0.928) TCGA-EE-A29Q-06 14 105420039 105420039 G A AHNAK2 Silent p.P583P 0.37 TCGA-EE-A29Q-06 14 106236041 106236041 T C IGHG3 Missense_Mutation p.N255S 0.40 tolerated(0.26) benign(0.231) TCGA-EE-A29Q-06 14 106994241 106994241 G A IGHV3-48 Silent p.F9F 0.38 TCGA-EE-A29Q-06 14 38678982 38678982 T G SSTR1 Missense_Mutation p.C130G 0.37 deleterious(0) probably_damaging(0.966) TCGA-EE-A29Q-06 14 60976434 60976434 C T SIX6 Silent p.P106P 0.48 TCGA-EE-A29Q-06 14 62233671 62233671 C T SNAPC1 Missense_Mutation p.P69L 0.45 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A29Q-06 14 71199552 71199552 G A MAP3K9 Missense_Mutation p.S859F 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 14 74995312 74995312 C T LTBP2 Missense_Mutation p.E748K 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A29Q-06 14 75266103 75266103 G A YLPM1 Missense_Mutation p.R1368K 0.35 probably_damaging(0.937) TCGA-EE-A29Q-06 14 75266107 75266107 T G YLPM1 Silent p.G1369G 0.36 TCGA-EE-A29Q-06 14 77703062 77703062 G A TMEM63C Missense_Mutation p.R213K 0.47 tolerated(1) benign(0.001) TCGA-EE-A29Q-06 14 77703063 77703063 G A TMEM63C Silent p.R213R 0.48 TCGA-EE-A29Q-06 14 81662540 81662540 A G GTF2A1 Missense_Mutation p.I175T 0.41 deleterious(0) probably_damaging(0.991) TCGA-EE-A29Q-06 14 95571490 95571490 A C DICER1 Missense_Mutation p.C1063G 0.37 tolerated(0.24) probably_damaging(0.989) TCGA-EE-A29Q-06 15 101821958 101821958 C T SNRPA1 Missense_Mutation p.E247K 0.39 deleterious(0.02) benign(0.111) TCGA-EE-A29Q-06 15 25417815 25417815 G A SNORD115-2 RNA 0.41 TCGA-EE-A29Q-06 15 25479448 25479448 C T SNORD115-35 RNA 0.38 TCGA-EE-A29Q-06 15 25959322 25959322 G A ATP10A Missense_Mutation p.P615S 0.32 tolerated(0.21) benign(0.145) TCGA-EE-A29Q-06 15 40094248 40094248 G A GPR176 Silent p.I211I 0.35 TCGA-EE-A29Q-06 15 45391914 45391914 C T DUOX2 Missense_Mutation p.D1121N 0.44 deleterious(0.01) probably_damaging(1) TCGA-EE-A29Q-06 15 48714179 48714179 C T FBN1 Missense_Mutation p.G2514R 0.42 probably_damaging(1) TCGA-EE-A29Q-06 15 54306296 54306296 G A UNC13C Missense_Mutation p.G399E 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29Q-06 15 57910298 57910298 G A MYZAP Missense_Mutation p.R77Q 0.28 tolerated(0.45) benign(0.181) TCGA-EE-A29Q-06 15 57921995 57921995 G A GCOM1 Silent p.R207R 0.37 TCGA-EE-A29Q-06 15 62182401 62182401 C T VPS13C Missense_Mutation p.E3102K 0.42 tolerated(0.92) benign(0.066) TCGA-EE-A29Q-06 15 65499217 65499217 G A CILP Silent p.V109V 0.39 TCGA-EE-A29Q-06 15 72638913 72638913 G A HEXA Missense_Mutation p.P429S 0.49 tolerated(0.32) possibly_damaging(0.451) TCGA-EE-A29Q-06 15 78390386 78390386 G A SH2D7 Missense_Mutation p.E128K 0.26 tolerated(0.39) benign(0.028) TCGA-EE-A29Q-06 15 90617385 90617385 T C ZNF710 Missense_Mutation p.L563P 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29Q-06 16 19680613 19680613 A T C16orf62 Missense_Mutation p.I874L 0.53 tolerated(0.07) benign(0.009) TCGA-EE-A29Q-06 16 19725554 19725554 T C KNOP1 Silent p.K268K 0.44 TCGA-EE-A29Q-06 16 20963831 20963831 C T DNAH3 Silent p.R3704R 0.35 TCGA-EE-A29Q-06 16 22314310 22314310 C T POLR3E Silent p.D7D 0.45 TCGA-EE-A29Q-06 16 26147219 26147219 G A HS3ST4 Missense_Mutation p.E341K 0.45 tolerated(0.1) possibly_damaging(0.753) TCGA-EE-A29Q-06 16 27472668 27472668 G A GTF3C1 3'UTR 0.43 TCGA-EE-A29Q-06 16 27506734 27506734 G A GTF3C1 Silent p.L810L 0.52 TCGA-EE-A29Q-06 16 2813159 2813159 C T SRRM2 Missense_Mutation p.P877L 0.54 unknown(0) TCGA-EE-A29Q-06 16 29897036 29897036 G T SEZ6L2 Missense_Mutation p.P415T 0.55 tolerated(0.08) benign(0.007) TCGA-EE-A29Q-06 16 30455807 30455807 G A SEPHS2 Silent p.A414A 0.45 TCGA-EE-A29Q-06 16 3406858 3406858 G A OR2C1 Silent p.G306G 0.36 TCGA-EE-A29Q-06 16 3641185 3641185 G A SLX4 Silent p.L818L 0.41 TCGA-EE-A29Q-06 16 461508 461508 G A DECR2 Missense_Mutation p.G270E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 16 48204027 48204027 G A ABCC11 Missense_Mutation p.R1294C 0.44 tolerated(0.07) benign(0.344) TCGA-EE-A29Q-06 16 50664180 50664180 G T NKD1 Silent p.R182R 0.34 TCGA-EE-A29Q-06 16 67289714 67289714 C T SLC9A5 Silent p.L264L 0.58 TCGA-EE-A29Q-06 16 67473036 67473036 G A ATP6V0D1 Silent p.R218R 0.40 TCGA-EE-A29Q-06 16 67840347 67840347 C T RANBP10 Silent p.G31G 0.27 TCGA-EE-A29Q-06 16 68405014 68405014 C T SMPD3 Silent p.L357L 0.38 TCGA-EE-A29Q-06 16 70913595 70913595 G A HYDIN Missense_Mutation p.S3427F 0.36 probably_damaging(0.919) TCGA-EE-A29Q-06 16 77775736 77775736 C T NUDT7 Silent p.I202I 0.34 TCGA-EE-A29Q-06 17 10209782 10209782 C T MYH13 Silent p.E1820E 0.41 TCGA-EE-A29Q-06 17 11511573 11511573 G A DNAH9 Missense_Mutation p.G182E 0.41 probably_damaging(0.993) TCGA-EE-A29Q-06 17 1248647 1248647 G A YWHAE 3'UTR 0.44 TCGA-EE-A29Q-06 17 16455964 16455964 G A ZNF287 Missense_Mutation p.H498Y 0.45 deleterious(0) probably_damaging(0.992) TCGA-EE-A29Q-06 17 27493685 27493685 G A MYO18A Silent p.L92L 0.39 TCGA-EE-A29Q-06 17 27493686 27493686 G A MYO18A Silent p.I91I 0.39 TCGA-EE-A29Q-06 17 27959545 27959545 G A SSH2 Silent p.Y862Y 0.38 TCGA-EE-A29Q-06 17 30661607 30661607 C G C17orf75 Missense_Mutation p.S251T 0.45 deleterious(0) probably_damaging(0.983) TCGA-EE-A29Q-06 17 38420972 38420972 C T WIPF2 Missense_Mutation p.P182S 0.51 deleterious(0) probably_damaging(0.998) TCGA-EE-A29Q-06 17 39578665 39578665 G A KRT37 Nonsense_Mutation p.Q252* 0.47 TCGA-EE-A29Q-06 17 41276130 41276130 G A BRCA1 Intron 0.41 TCGA-EE-A29Q-06 17 42393802 42393802 G A RUNDC3A Missense_Mutation p.E335K 0.45 deleterious(0.01) benign(0.08) TCGA-EE-A29Q-06 17 42850229 42850229 G A ADAM11 Missense_Mutation p.R228H 0.43 tolerated(0.15) benign(0.013) TCGA-EE-A29Q-06 17 43215180 43215180 C A ACBD4 Missense_Mutation p.S198R 0.42 deleterious_low_confidence(0.03) benign(0.233) TCGA-EE-A29Q-06 17 48696108 48696108 C T CACNA1G Silent p.F1840F 0.45 TCGA-EE-A29Q-06 17 48746561 48746561 G A ABCC3 Silent p.G666G 0.39 TCGA-EE-A29Q-06 17 57287389 57287389 G A SMG8 5'UTR 0.50 TCGA-EE-A29Q-06 17 62080233 62080233 C T ICAM2 Silent p.L234L 0.34 TCGA-EE-A29Q-06 17 6337367 6337367 C A AIPL1 Missense_Mutation p.D50Y 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 17 72943163 72943163 G A OTOP3 Missense_Mutation p.D405N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 17 74278089 74278089 G A QRICH2 Silent p.I1207I 0.33 TCGA-EE-A29Q-06 17 76127788 76127788 C T TMC8 Missense_Mutation p.P40L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 17 76127798 76127798 G A TMC8 Missense_Mutation p.M43I 0.62 tolerated(0.31) benign(0.01) TCGA-EE-A29Q-06 17 76492090 76492090 G A DNAH17 Missense_Mutation p.R1910W 0.45 probably_damaging(0.996) TCGA-EE-A29Q-06 17 76993522 76993522 G A CANT1 Silent p.S61S 0.68 TCGA-EE-A29Q-06 17 8141746 8141746 G A CTC1 Silent p.L133L 0.32 TCGA-EE-A29Q-06 17 8157562 8157562 C T PFAS Missense_Mutation p.A74V 0.37 tolerated(0.33) benign(0.04) TCGA-EE-A29Q-06 17 8157564 8157564 C T PFAS Missense_Mutation p.R75W 0.38 deleterious(0.01) benign(0.339) TCGA-EE-A29Q-06 17 970419 970419 G A ABR Silent p.P360P 0.47 TCGA-EE-A29Q-06 18 12464892 12464892 G C SPIRE1 Silent p.V490V 0.35 TCGA-EE-A29Q-06 18 14542899 14542899 A G POTEC Missense_Mutation p.S83P 0.14 deleterious_low_confidence(0) benign(0.307) TCGA-EE-A29Q-06 18 28660276 28660276 C A DSC2 Missense_Mutation p.G436C 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A29Q-06 18 28728506 28728506 C T DSC1 Missense_Mutation p.E243K 0.38 tolerated(0.12) possibly_damaging(0.583) TCGA-EE-A29Q-06 18 28972133 28972133 G A DSG4 Missense_Mutation p.E279K 0.32 tolerated(0.14) benign(0.015) TCGA-EE-A29Q-06 18 31318689 31318689 G A ASXL3 Missense_Mutation p.D441N 0.40 probably_damaging(0.998) TCGA-EE-A29Q-06 18 31324348 31324348 G A ASXL3 Silent p.Q1512Q 0.32 TCGA-EE-A29Q-06 18 43243782 43243782 C T SLC14A2 Missense_Mutation p.P462S 0.49 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A29Q-06 19 10668488 10668488 G A KRI1 Silent p.P487P 0.29 TCGA-EE-A29Q-06 19 11015633 11015633 A T CARM1 Missense_Mutation p.D76V 0.29 tolerated(0.07) benign(0.266) TCGA-EE-A29Q-06 19 11134211 11134211 G A SMARCA4 Silent p.E959E 0.40 TCGA-EE-A29Q-06 19 14046617 14046617 G A PODNL1 Silent p.P144P 0.31 TCGA-EE-A29Q-06 19 2344608 2344608 C T SPPL2B RNA 0.38 TCGA-EE-A29Q-06 19 36054547 36054547 T G ATP4A 5'UTR 0.27 TCGA-EE-A29Q-06 19 40384163 40384163 G A FCGBP Silent p.I3149I 0.17 TCGA-EE-A29Q-06 19 4171169 4171169 C T CREB3L3 Silent p.V324V 0.43 TCGA-EE-A29Q-06 19 43349293 43349293 C T PSG10P RNA 0.42 TCGA-EE-A29Q-06 19 43372135 43372135 G A PSG1 3'UTR 0.37 TCGA-EE-A29Q-06 19 43773628 43773628 G A PSG9 5'UTR 0.48 TCGA-EE-A29Q-06 19 44934487 44934487 G A ZNF229 Silent p.L157L 0.39 TCGA-EE-A29Q-06 19 45021052 45021052 G A CEACAM20 RNA 0.43 TCGA-EE-A29Q-06 19 47960801 47960801 G A SLC8A2 Silent p.F242F 0.44 TCGA-EE-A29Q-06 19 48201918 48201918 G A GLTSCR1 Silent p.Q1092Q 0.38 TCGA-EE-A29Q-06 19 50946748 50946748 C T MYBPC2 Intron 0.22 TCGA-EE-A29Q-06 19 52497837 52497837 G A ZNF615 Silent p.S175S 0.38 TCGA-EE-A29Q-06 19 53611599 53611599 G A ZNF415 3'UTR 0.42 TCGA-EE-A29Q-06 19 54803962 54803962 G A LILRA3 Silent p.P17P 0.44 TCGA-EE-A29Q-06 19 54803963 54803963 G A LILRA3 Missense_Mutation p.P17L 0.46 tolerated(0.56) benign(0.005) TCGA-EE-A29Q-06 19 56370498 56370498 T A NLRP4 Missense_Mutation p.I580N 0.43 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A29Q-06 19 56530712 56530712 T C NLRP5 Silent p.I190I 0.43 TCGA-EE-A29Q-06 19 6832125 6832125 C T VAV1 Silent p.I474I 0.42 TCGA-EE-A29Q-06 19 8670020 8670020 C T ADAMTS10 Silent p.V104V 0.40 TCGA-EE-A29Q-06 19 9025625 9025625 G A MUC16 Missense_Mutation p.P12277S 0.27 benign(0.095) TCGA-EE-A29Q-06 1 114445307 114445307 G A AP4B1 Silent p.P97P 0.48 TCGA-EE-A29Q-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.46 deleterious(0) benign(0.109) TCGA-EE-A29Q-06 1 118598527 118598527 C T SPAG17 Missense_Mutation p.E851K 0.34 deleterious(0) possibly_damaging(0.84) TCGA-EE-A29Q-06 1 118598528 118598528 C T SPAG17 Silent p.L850L 0.33 TCGA-EE-A29Q-06 1 11888542 11888542 C T CLCN6 Missense_Mutation p.L328F 0.45 deleterious(0.03) probably_damaging(1) TCGA-EE-A29Q-06 1 13668983 13668983 C T PRAMEF14 Silent p.R449R 0.44 TCGA-EE-A29Q-06 1 143767740 143767740 G A PPIAL4G Missense_Mutation p.R37C 0.24 tolerated_low_confidence(0.16) benign(0.038) TCGA-EE-A29Q-06 1 145281958 145281958 C A NOTCH2NL Missense_Mutation p.T213K 0.10 tolerated_low_confidence(0.07) benign(0.005) TCGA-EE-A29Q-06 1 152275651 152275651 G A FLG Missense_Mutation p.S3904F 0.48 unknown(0) TCGA-EE-A29Q-06 1 152671548 152671548 G A LCE2A Silent p.G57G 0.35 TCGA-EE-A29Q-06 1 158047904 158047904 C T KIRREL Missense_Mutation p.S109F 0.50 deleterious(0) probably_damaging(0.979) TCGA-EE-A29Q-06 1 159023442 159023442 C T IFI16 Silent p.L679L 0.41 TCGA-EE-A29Q-06 1 159922291 159922291 A T SLAMF9 Missense_Mutation p.F142Y 0.46 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A29Q-06 1 160209930 160209930 G A DCAF8 Nonsense_Mutation p.R94* 0.42 TCGA-EE-A29Q-06 1 17586203 17586203 G A PADI3 Missense_Mutation p.E75K 0.42 tolerated(0.06) benign(0.042) TCGA-EE-A29Q-06 1 17593216 17593216 G A PADI3 Silent p.R137R 0.45 TCGA-EE-A29Q-06 1 176853604 176853604 C T ASTN1 Missense_Mutation p.E1033K 0.38 deleterious(0) probably_damaging(0.92) TCGA-EE-A29Q-06 1 178412155 178412155 G A RASAL2 Missense_Mutation p.G425R 0.33 deleterious(0) probably_damaging(0.943) TCGA-EE-A29Q-06 1 178427138 178427138 G A RASAL2 Missense_Mutation p.R904K 0.38 tolerated(0.14) probably_damaging(0.99) TCGA-EE-A29Q-06 1 190067325 190067325 G A BRINP3 Silent p.D708D 0.32 TCGA-EE-A29Q-06 1 19612767 19612767 G A AKR7A3 Missense_Mutation p.P105L 0.40 deleterious(0.04) benign(0.293) TCGA-EE-A29Q-06 1 197404099 197404099 G A CRB1 Missense_Mutation p.E1036K 0.30 tolerated(0.14) benign(0.002) TCGA-EE-A29Q-06 1 203134668 203134668 C T ADORA1 Silent p.I207I 0.43 TCGA-EE-A29Q-06 1 206634845 206634845 G A SRGAP2 3'UTR 0.43 TCGA-EE-A29Q-06 1 21212837 21212837 G A EIF4G3 Nonsense_Mutation p.Q711* 0.45 TCGA-EE-A29Q-06 1 212274335 212274335 C T DTL Missense_Mutation p.A668V 0.58 tolerated(0.08) benign(0.41) TCGA-EE-A29Q-06 1 233344336 233344336 G A PCNXL2 Missense_Mutation p.P931S 0.44 tolerated(0.24) benign(0.006) TCGA-EE-A29Q-06 1 233515261 233515261 G A MLK4 Missense_Mutation p.D837N 0.35 tolerated(0.48) benign(0.003) TCGA-EE-A29Q-06 1 23758191 23758191 G A ASAP3 Silent p.F848F 0.45 TCGA-EE-A29Q-06 1 240370636 240370636 G A FMN2 Missense_Mutation p.E842K 0.41 unknown(0) TCGA-EE-A29Q-06 1 24078417 24078417 C T TCEB3 Missense_Mutation p.S467F 0.38 deleterious(0) possibly_damaging(0.778) TCGA-EE-A29Q-06 1 241262035 241262035 C T RGS7 Missense_Mutation p.D36N 0.39 tolerated(0.07) probably_damaging(0.991) TCGA-EE-A29Q-06 1 247737658 247737658 G A GCSAML Missense_Mutation p.D128N 0.48 deleterious(0) probably_damaging(0.996) TCGA-EE-A29Q-06 1 248129370 248129370 G A OR2AK2 Missense_Mutation p.G246E 0.40 tolerated(0.13) benign(0.327) TCGA-EE-A29Q-06 1 248685759 248685759 G A OR2G6 Missense_Mutation p.G271E 0.45 deleterious(0) possibly_damaging(0.787) TCGA-EE-A29Q-06 1 32688000 32688000 C T EIF3I 5'UTR 0.42 TCGA-EE-A29Q-06 1 3427395 3427395 C G MEGF6 Missense_Mutation p.G396R 0.33 tolerated(0.23) benign(0.414) TCGA-EE-A29Q-06 1 45120414 45120414 C T TMEM53 Silent p.S217S 0.42 TCGA-EE-A29Q-06 1 47264727 47264727 G T CYP4B1 5'UTR 0.52 TCGA-EE-A29Q-06 1 6696305 6696305 G A DNAJC11 Missense_Mutation p.A509V 0.41 tolerated(0.07) benign(0.03) TCGA-EE-A29Q-06 1 71318370 71318370 G A PTGER3 3'UTR 0.48 TCGA-EE-A29Q-06 1 94463528 94463528 G A ABCA4 Silent p.L2206L 0.42 TCGA-EE-A29Q-06 1 978791 978791 C T AGRN Silent p.A519A 0.35 TCGA-EE-A29Q-06 1 99764778 99764778 C T LPPR4 Silent p.N242N 0.44 TCGA-EE-A29Q-06 20 1552568 1552568 C T SIRPB1 Nonsense_Mutation p.W183* 0.42 TCGA-EE-A29Q-06 20 31387068 31387068 C T DNMT3B Missense_Mutation p.P565S 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A29Q-06 20 31601720 31601720 C T BPIFB2 Missense_Mutation p.S138F 0.38 tolerated(0.71) benign(0.005) TCGA-EE-A29Q-06 20 34451305 34451305 C T PHF20 Missense_Mutation p.P264L 0.40 deleterious(0.02) possibly_damaging(0.883) TCGA-EE-A29Q-06 20 3846632 3846632 G A MAVS Silent p.A487A 0.42 TCGA-EE-A29Q-06 20 42089189 42089189 C T SRSF6 Missense_Mutation p.R209C 0.29 deleterious(0.02) unknown(0) TCGA-EE-A29Q-06 20 42213693 42213693 T A SGK2 3'UTR 0.38 TCGA-EE-A29Q-06 20 55033636 55033636 G A CASS4 Missense_Mutation p.E732K 0.33 deleterious(0.01) possibly_damaging(0.727) TCGA-EE-A29Q-06 20 61910291 61910291 C T ARFGAP1 Missense_Mutation p.P191S 0.35 tolerated(0.18) benign(0.034) TCGA-EE-A29Q-06 20 62223911 62223911 G A GMEB2 Silent p.V268V 0.24 TCGA-EE-A29Q-06 20 62275253 62275253 G A STMN3 Silent p.A49A 0.35 TCGA-EE-A29Q-06 20 62321443 62321443 C T RTEL1 Silent p.F739F 0.47 TCGA-EE-A29Q-06 21 43187084 43187084 G A RIPK4 Missense_Mutation p.R40C 0.11 deleterious(0) probably_damaging(0.91) TCGA-EE-A29Q-06 21 43524199 43524199 T A UMODL1 Splice_Site p.X507_splice 0.46 TCGA-EE-A29Q-06 21 46021037 46021037 G A KRTAP10-7 Silent p.G172G 0.28 TCGA-EE-A29Q-06 22 17071966 17071966 C T CCT8L2 Missense_Mutation p.G492E 0.39 tolerated(0.47) benign(0.137) TCGA-EE-A29Q-06 22 17280681 17280681 C T XKR3 Missense_Mutation p.R190Q 0.40 tolerated(0.98) benign(0) TCGA-EE-A29Q-06 22 21066865 21066865 G A PI4KA Missense_Mutation p.S1904F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 22 26422565 26422565 G A MYO18B Missense_Mutation p.E2209K 0.51 tolerated(0.06) benign(0.341) TCGA-EE-A29Q-06 22 26688844 26688844 G A SEZ6L Silent p.K189K 0.25 TCGA-EE-A29Q-06 22 29736755 29736755 C T AP1B1 Missense_Mutation p.G630S 0.42 tolerated(0.07) possibly_damaging(0.601) TCGA-EE-A29Q-06 22 40681769 40681769 C T TNRC6B Missense_Mutation p.P1235S 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 22 42114231 42114231 C T MEI1 Missense_Mutation p.S229F 0.32 deleterious(0.02) benign(0.281) TCGA-EE-A29Q-06 2 107459589 107459589 G A ST6GAL2 Missense_Mutation p.A282V 0.53 possibly_damaging(0.497) TCGA-EE-A29Q-06 2 108487272 108487272 G A RGPD4 Missense_Mutation p.E938K 0.49 tolerated(0.22) benign(0.269) TCGA-EE-A29Q-06 2 131487557 131487557 T A GPR148 Missense_Mutation p.V278E 0.50 deleterious(0) probably_damaging(0.93) TCGA-EE-A29Q-06 2 132238055 132238055 C T TUBA3D Silent p.P263P 0.43 TCGA-EE-A29Q-06 2 132238056 132238056 C T TUBA3D Missense_Mutation p.R264C 0.44 deleterious_low_confidence(0) benign(0.442) TCGA-EE-A29Q-06 2 136875679 136875679 C T CXCR4 5'Flank 0.24 TCGA-EE-A29Q-06 2 136875681 136875681 C T CXCR4 5'Flank 0.24 TCGA-EE-A29Q-06 2 162761339 162761339 C T SLC4A10 Silent p.L557L 0.33 TCGA-EE-A29Q-06 2 165947241 165947241 T A SCN3A Missense_Mutation p.I1808L 0.50 deleterious(0) probably_damaging(0.991) TCGA-EE-A29Q-06 2 170537668 170537668 G A CCDC173 Missense_Mutation p.T48I 0.54 tolerated(0.6) benign(0.077) TCGA-EE-A29Q-06 2 179422954 179422954 C T TTN Missense_Mutation p.E29043K 0.24 TCGA-EE-A29Q-06 2 179615410 179615410 C T TTN Intron 0.41 TCGA-EE-A29Q-06 2 182360543 182360543 A G ITGA4 Silent p.L473L 0.50 TCGA-EE-A29Q-06 2 187519427 187519427 G A ITGAV Missense_Mutation p.R519K 0.34 tolerated(0.26) benign(0.002) TCGA-EE-A29Q-06 2 187519428 187519428 G A ITGAV Silent p.R519R 0.34 TCGA-EE-A29Q-06 2 196837011 196837011 C T DNAH7 Silent p.R671R 0.37 TCGA-EE-A29Q-06 2 206610481 206610481 G A NRP2 Silent p.G551G 0.32 TCGA-EE-A29Q-06 2 208478098 208478098 A G METTL21A Missense_Mutation p.L110S 0.32 deleterious(0) probably_damaging(0.959) TCGA-EE-A29Q-06 2 21231912 21231912 C T APOB Missense_Mutation p.A2610T 0.48 possibly_damaging(0.782) TCGA-EE-A29Q-06 2 227875216 227875216 C T COL4A4 Silent p.G1445G 0.77 TCGA-EE-A29Q-06 2 231134564 231134564 C T SP140 Missense_Mutation p.S447L 0.56 tolerated(0.11) benign(0.002) TCGA-EE-A29Q-06 2 238881822 238881822 G A UBE2F Missense_Mutation p.D25N 0.76 tolerated(0.2) benign(0.017) TCGA-EE-A29Q-06 2 28752248 28752248 G A PLB1 Silent p.K130K 0.38 TCGA-EE-A29Q-06 2 28802509 28802509 G A PLB1 Missense_Mutation p.E501K 0.27 tolerated(0.09) benign(0.326) TCGA-EE-A29Q-06 2 31154987 31154987 G A GALNT14 Silent p.F340F 0.35 TCGA-EE-A29Q-06 2 37458792 37458792 C T CEBPZ 5'UTR 0.19 TCGA-EE-A29Q-06 2 38978494 38978494 G A SRSF7 5'UTR 0.37 TCGA-EE-A29Q-06 2 48047553 48047553 G A FBXO11 Missense_Mutation p.P582L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 2 63665009 63665009 C T WDPCP Intron 0.21 TCGA-EE-A29Q-06 2 74834278 74834278 G C M1AP Missense_Mutation p.L167V 0.36 deleterious(0.04) benign(0.161) TCGA-EE-A29Q-06 2 74834279 74834279 G A M1AP Silent p.D166D 0.35 TCGA-EE-A29Q-06 2 95481030 95481030 C T ANKRD20A8P RNA 0.32 TCGA-EE-A29Q-06 3 101540275 101540275 C T NXPE3 Missense_Mutation p.P386L 0.32 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A29Q-06 3 112068651 112068651 C T CD200 Missense_Mutation p.R288W 0.42 deleterious(0.02) benign(0.123) TCGA-EE-A29Q-06 3 150917042 150917042 C T GPR171 Silent p.T44T 0.36 TCGA-EE-A29Q-06 3 155232638 155232638 G A PLCH1 Silent p.F490F 0.43 TCGA-EE-A29Q-06 3 171320999 171320999 G A PLD1 Nonsense_Mutation p.R1032* 0.32 TCGA-EE-A29Q-06 3 189713218 189713218 T C LEPREL1 Missense_Mutation p.E165G 0.28 deleterious(0) benign(0.06) TCGA-EE-A29Q-06 3 3078982 3078982 C T CNTN4 Missense_Mutation p.P688S 0.26 deleterious(0.03) possibly_damaging(0.742) TCGA-EE-A29Q-06 3 3078983 3078983 C T CNTN4 Missense_Mutation p.P688L 0.26 deleterious(0) probably_damaging(0.98) TCGA-EE-A29Q-06 3 36874178 36874178 G A TRANK1 Missense_Mutation p.S2255F 0.35 tolerated(0.19) benign(0.005) TCGA-EE-A29Q-06 3 36897228 36897228 C T TRANK1 Missense_Mutation p.E1285K 0.44 deleterious(0) probably_damaging(0.972) TCGA-EE-A29Q-06 3 48900027 48900027 C T SLC25A20 Silent p.Q161Q 0.33 TCGA-EE-A29Q-06 3 50211375 50211375 G A SEMA3F Missense_Mutation p.E88K 0.33 tolerated(0.16) possibly_damaging(0.86) TCGA-EE-A29Q-06 4 106863676 106863676 C T NPNT Missense_Mutation p.P356S 0.45 tolerated(0.09) possibly_damaging(0.723) TCGA-EE-A29Q-06 4 123107326 123107326 A G KIAA1109 Missense_Mutation p.D165G 0.40 benign(0.031) TCGA-EE-A29Q-06 4 126408660 126408660 G A FAT4 Missense_Mutation p.R4326K 0.40 benign(0.006) TCGA-EE-A29Q-06 4 156632252 156632252 G A GUCY1A3 Missense_Mutation p.R312K 0.38 tolerated(0.99) benign(0.005) TCGA-EE-A29Q-06 4 159894284 159894284 G A C4orf45 Missense_Mutation p.P82S 0.35 tolerated(0.15) possibly_damaging(0.713) TCGA-EE-A29Q-06 4 164534466 164534466 C T MARCH1 Missense_Mutation p.R81K 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29Q-06 4 16504604 16504604 C T LDB2 Intron 0.50 TCGA-EE-A29Q-06 4 169098907 169098907 G A ANXA10 Missense_Mutation p.G166E 0.34 tolerated(0.05) probably_damaging(0.976) TCGA-EE-A29Q-06 4 170398364 170398364 G A NEK1 Missense_Mutation p.S782L 0.27 tolerated(0.46) benign(0.003) TCGA-EE-A29Q-06 4 20525762 20525762 G A SLIT2 Missense_Mutation p.R467K 0.35 tolerated(0.15) probably_damaging(0.96) TCGA-EE-A29Q-06 4 30725263 30725263 C T PCDH7 Missense_Mutation p.P740L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 4 41984772 41984772 T C DCAF4L1 Silent p.H321H 0.40 TCGA-EE-A29Q-06 4 48990547 48990547 C T CWH43 Missense_Mutation p.P33S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 4 48990562 48990562 G A CWH43 Missense_Mutation p.E38K 0.38 tolerated(0.13) benign(0.009) TCGA-EE-A29Q-06 4 55133778 55133778 G A PDGFRA Missense_Mutation p.E331K 0.51 tolerated(0.33) benign(0.172) TCGA-EE-A29Q-06 4 69978518 69978518 G A UGT2B7 3'UTR 0.33 TCGA-EE-A29Q-06 4 73175217 73175217 T C ADAMTS3 Silent p.E692E 0.42 TCGA-EE-A29Q-06 4 85530639 85530639 C T CDS1 Silent p.F101F 0.35 TCGA-EE-A29Q-06 5 112228602 112228602 G C ZRSR1 Missense_Mutation p.R422S 0.27 tolerated(0.1) possibly_damaging(0.587) TCGA-EE-A29Q-06 5 115177414 115177414 T A ATG12 5'UTR 0.33 TCGA-EE-A29Q-06 5 121787062 121787062 G A SNCAIP Silent p.K840K 0.36 TCGA-EE-A29Q-06 5 124036878 124036878 G A ZNF608 Missense_Mutation p.P331S 0.43 tolerated(0.6) benign(0.013) TCGA-EE-A29Q-06 5 128326123 128326123 G A SLC27A6 Missense_Mutation p.G312E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 5 137853289 137853289 A G ETF1 Silent p.N121N 0.39 TCGA-EE-A29Q-06 5 13830774 13830774 C T DNAH5 Missense_Mutation p.G1998E 0.46 probably_damaging(0.982) TCGA-EE-A29Q-06 5 139928875 139928875 G A EIF4EBP3 3'UTR 0.53 TCGA-EE-A29Q-06 5 140573816 140573816 C T PCDHB10 Missense_Mutation p.P564L 0.24 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-EE-A29Q-06 5 145379706 145379706 G A SH3RF2 Missense_Mutation p.R155Q 0.47 tolerated(0.1) benign(0.127) TCGA-EE-A29Q-06 5 14601461 14601461 G A FAM105A Silent p.R86R 0.37 TCGA-EE-A29Q-06 5 148904678 148904678 C A CSNK1A1 Missense_Mutation p.S96I 0.44 deleterious_low_confidence(0) benign(0.412) TCGA-EE-A29Q-06 5 148904679 148904679 T A CSNK1A1 Missense_Mutation p.S96C 0.44 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-EE-A29Q-06 5 161324263 161324263 C T GABRA1 Silent p.P402P 0.38 TCGA-EE-A29Q-06 5 176522661 176522661 C T FGFR4 Silent p.F586F 0.47 TCGA-EE-A29Q-06 5 176522662 176522662 C T FGFR4 Missense_Mutation p.P587S 0.44 deleterious(0) benign(0.338) TCGA-EE-A29Q-06 5 179739468 179739468 C T GFPT2 Missense_Mutation p.R503K 0.40 deleterious(0.04) benign(0.152) TCGA-EE-A29Q-06 5 179992944 179992944 C G CNOT6 Missense_Mutation p.I228M 0.30 tolerated(0.08) possibly_damaging(0.788) TCGA-EE-A29Q-06 5 180668622 180668622 C A GNB2L1 Missense_Mutation p.R100L 0.44 deleterious(0.05) benign(0.045) TCGA-EE-A29Q-06 5 33616147 33616147 C T ADAMTS12 Missense_Mutation p.G725E 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A29Q-06 5 35667215 35667215 C T SPEF2 Silent p.F403F 0.41 TCGA-EE-A29Q-06 5 35910006 35910006 G A CAPSL Silent p.L163L 0.41 TCGA-EE-A29Q-06 5 36976495 36976495 C T NIPBL Nonsense_Mutation p.Q496* 0.51 TCGA-EE-A29Q-06 5 41019035 41019035 C T MROH2B Missense_Mutation p.E843K 0.40 deleterious(0.03) benign(0.026) TCGA-EE-A29Q-06 5 5461345 5461345 C T KIAA0947 Missense_Mutation p.S633F 0.27 tolerated(0.08) benign(0.085) TCGA-EE-A29Q-06 5 89925200 89925200 T A GPR98 Silent p.P561P 0.35 TCGA-EE-A29Q-06 5 90124925 90124925 G A GPR98 Silent p.K5511K 0.38 TCGA-EE-A29Q-06 6 105243490 105243490 G A HACE1 Missense_Mutation p.A296V 0.71 deleterious(0) benign(0.038) TCGA-EE-A29Q-06 6 128176241 128176241 C T THEMIS Missense_Mutation p.E62K 0.79 tolerated(0.09) benign(0.234) TCGA-EE-A29Q-06 6 133055411 133055411 G A VNN3 Missense_Mutation p.P109S 0.79 deleterious(0.01) possibly_damaging(0.799) TCGA-EE-A29Q-06 6 155153376 155153376 C T SCAF8 Missense_Mutation p.P888L 0.70 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A29Q-06 6 31508159 31508159 G A DDX39B Silent p.L51L 0.69 TCGA-EE-A29Q-06 6 33133741 33133741 T C COL11A2 Silent p.G1397G 0.68 TCGA-EE-A29Q-06 6 36712904 36712904 C T CPNE5 Missense_Mutation p.G451D 0.82 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A29Q-06 6 39847123 39847123 C T DAAM2 Missense_Mutation p.P572L 0.78 tolerated(0.07) benign(0.312) TCGA-EE-A29Q-06 6 46609919 46609919 T C CYP39A1 Silent p.Q98Q 0.88 TCGA-EE-A29Q-06 6 51936946 51936946 G A PKHD1 Missense_Mutation p.P190L 0.70 tolerated(1) benign(0.014) TCGA-EE-A29Q-06 6 52138585 52138585 G A MCM3 Missense_Mutation p.L547F 0.74 deleterious(0.02) possibly_damaging(0.468) TCGA-EE-A29Q-06 6 55216051 55216051 G A GFRAL Missense_Mutation p.G124E 0.71 tolerated(0.55) benign(0.011) TCGA-EE-A29Q-06 6 5999212 5999212 G A NRN1 Silent p.F142F 0.71 TCGA-EE-A29Q-06 6 79607571 79607571 G A IRAK1BP1 Missense_Mutation p.G136E 0.76 tolerated(0.45) benign(0.014) TCGA-EE-A29Q-06 6 83937058 83937058 G A ME1 Missense_Mutation p.T424I 0.86 deleterious(0) probably_damaging(0.946) TCGA-EE-A29Q-06 7 100349564 100349564 C T ZAN Silent p.P612P 0.56 TCGA-EE-A29Q-06 7 100679881 100679881 T C MUC17 Silent p.R1728R 0.36 TCGA-EE-A29Q-06 7 100732120 100732120 G A TRIM56 Silent p.R509R 0.33 TCGA-EE-A29Q-06 7 102079416 102079416 C T ORAI2 Missense_Mutation p.L5F 0.36 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-EE-A29Q-06 7 130025046 130025046 G A CPA1 Missense_Mutation p.E283K 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 7 138774396 138774396 G A ZC3HAV1 Nonsense_Mutation p.Q140* 0.51 TCGA-EE-A29Q-06 7 141734599 141734599 C T MGAM Silent p.S639S 0.42 TCGA-EE-A29Q-06 7 141752214 141752214 G A MGAM Missense_Mutation p.E976K 0.23 tolerated(0.12) benign(0.073) TCGA-EE-A29Q-06 7 141765200 141765200 G A MGAM Missense_Mutation p.G1517D 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29Q-06 7 142458515 142458515 C T PRSS1 Silent p.G50G 0.37 TCGA-EE-A29Q-06 7 142566883 142566883 C T EPHB6 Missense_Mutation p.L814F 0.20 tolerated(1) benign(0.123) TCGA-EE-A29Q-06 7 143807350 143807350 G A OR2A2 Silent p.L225L 0.44 TCGA-EE-A29Q-06 7 150325488 150325488 G A GIMAP6 Silent p.F66F 0.43 TCGA-EE-A29Q-06 7 150883937 150883937 C T ASB10 Missense_Mutation p.R94Q 0.61 deleterious(0.04) benign(0.015) TCGA-EE-A29Q-06 7 155530346 155530346 C T RBM33 Silent p.F461F 0.47 TCGA-EE-A29Q-06 7 31792833 31792833 G A PDE1C 3'UTR 0.59 TCGA-EE-A29Q-06 7 32909045 32909045 G A KBTBD2 Missense_Mutation p.P595L 0.35 tolerated_low_confidence(0.11) possibly_damaging(0.829) TCGA-EE-A29Q-06 7 34094871 34094871 C T BMPER Missense_Mutation p.P295S 0.28 tolerated(0.72) benign(0.002) TCGA-EE-A29Q-06 7 43351470 43351470 G A HECW1 Missense_Mutation p.D46N 0.35 deleterious_low_confidence(0.01) benign(0.167) TCGA-EE-A29Q-06 7 75045302 75045302 T A POM121C 3'Flank 0.47 TCGA-EE-A29Q-06 7 93112152 93112152 A G CALCR Intron 0.46 TCGA-EE-A29Q-06 7 97821158 97821158 G A LMTK2 Missense_Mutation p.E461K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29Q-06 8 104709373 104709373 C T RIMS2 Missense_Mutation p.S79L 0.45 deleterious_low_confidence(0) benign(0.182) TCGA-EE-A29Q-06 8 121210141 121210141 C T COL14A1 Silent p.L228L 0.33 TCGA-EE-A29Q-06 8 125551344 125551344 C T TATDN1 5'Flank 0.34 TCGA-EE-A29Q-06 8 142476520 142476520 G A MROH5 3'UTR 0.41 TCGA-EE-A29Q-06 8 142487573 142487573 C T MROH5 3'UTR 0.64 TCGA-EE-A29Q-06 8 143866801 143866801 C T LY6D Missense_Mutation p.G75S 0.18 tolerated(0.1) possibly_damaging(0.786) TCGA-EE-A29Q-06 8 145615897 145615897 C T ADCK5 Missense_Mutation p.S98F 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A29Q-06 8 16001120 16001120 C T MSR1 Missense_Mutation p.G327E 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A29Q-06 8 1808154 1808154 C T ARHGEF10 Silent p.I95I 0.42 TCGA-EE-A29Q-06 8 42932451 42932451 C T FNTA Silent p.F242F 0.40 TCGA-EE-A29Q-06 8 43159895 43159895 C T RNU6-104P 3'Flank 0.32 TCGA-EE-A29Q-06 8 55538573 55538573 G A RP1 Missense_Mutation p.E711K 0.50 deleterious(0.03) benign(0.293) TCGA-EE-A29Q-06 8 59750747 59750747 G A TOX Missense_Mutation p.R273C 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A29Q-06 8 63978645 63978645 G A TTPA Missense_Mutation p.P124S 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29Q-06 8 70585398 70585398 A T SLCO5A1 Silent p.I751I 0.38 TCGA-EE-A29Q-06 8 77763665 77763665 G A ZFHX4 Missense_Mutation p.G1503E 0.40 benign(0) TCGA-EE-A29Q-06 8 86357411 86357411 G A CA3 Silent p.Q157Q 0.25 TCGA-EE-A29Q-06 8 92998456 92998456 C T RUNX1T1 Nonsense_Mutation p.W403* 0.49 TCGA-EE-A29Q-06 8 95262528 95262528 C T GEM 3'UTR 0.43 TCGA-EE-A29Q-06 9 34381019 34381019 G A C9orf24 Missense_Mutation p.H195Y 0.75 deleterious(0) benign(0.044) TCGA-EE-A29Q-06 9 39171442 39171442 G A CNTNAP3 Silent p.F419F 0.72 TCGA-EE-A29Q-06 X 105153188 105153188 G A NRK Missense_Mutation p.E520K 0.76 deleterious(0) probably_damaging(0.921) TCGA-EE-A29Q-06 X 111090482 111090482 G A TRPC5 Silent p.F520F 0.71 TCGA-EE-A29Q-06 X 130408805 130408805 G A IGSF1 Silent p.F1178F 0.75 TCGA-EE-A29Q-06 X 151124259 151124259 G A GABRE Silent p.V286V 0.83 TCGA-EE-A29Q-06 X 20156737 20156737 T C EIF1AX Missense_Mutation p.K7R 0.73 tolerated(0.08) unknown(0) TCGA-EE-A29Q-06 X 37027986 37027986 G A FAM47C Silent p.E501E 0.73 TCGA-EE-A29Q-06 X 49143507 49143507 C T PPP1R3F Silent p.S785S 0.71 TCGA-EE-A29Q-06 X 52825638 52825638 C T SPANXN5 Missense_Mutation p.E37K 0.82 tolerated(0.18) benign(0.032) TCGA-EE-A29Q-06 X 77224791 77224791 C T PGAM4 Nonsense_Mutation p.W115* 0.68 TCGA-EE-A29Q-06 X 9863352 9863352 G A SHROOM2 Silent p.Q468Q 0.75 TCGA-EE-A29R-06 10 102257436 102257436 G A SEC31B Missense_Mutation p.P660S 0.48 tolerated(0.92) benign(0.003) TCGA-EE-A29R-06 10 103433355 103433355 G A FBXW4 Silent p.F144F 0.44 TCGA-EE-A29R-06 10 104175794 104175794 G A PSD Missense_Mutation p.S246F 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A29R-06 10 113928238 113928238 G A GPAM Silent p.F313F 0.43 TCGA-EE-A29R-06 10 114170249 114170249 C T ACSL5 Missense_Mutation p.P303L 0.48 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A29R-06 10 116045715 116045715 G A VWA2 Missense_Mutation p.E339K 0.45 deleterious(0.01) possibly_damaging(0.782) TCGA-EE-A29R-06 10 116620569 116620569 C T FAM160B1 Missense_Mutation p.P670L 0.43 deleterious(0) probably_damaging(0.931) TCGA-EE-A29R-06 10 12001227 12001227 G A UPF2 Silent p.L771L 0.42 TCGA-EE-A29R-06 10 121612602 121612602 G A MCMBP Silent p.P178P 0.39 TCGA-EE-A29R-06 10 134942990 134942990 C T GPR123 Missense_Mutation p.P553L 0.33 tolerated(1) probably_damaging(1) TCGA-EE-A29R-06 10 15106407 15106407 G A OLAH Missense_Mutation p.G156E 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A29R-06 10 15559193 15559193 C T ITGA8 Silent p.R1052R 0.50 TCGA-EE-A29R-06 10 15600105 15600105 C T ITGA8 Missense_Mutation p.E912K 0.53 tolerated(0.1) benign(0.117) TCGA-EE-A29R-06 10 15639211 15639211 T A ITGA8 Missense_Mutation p.T736S 0.50 tolerated(0.06) possibly_damaging(0.9) TCGA-EE-A29R-06 10 15648358 15648358 C T ITGA8 Missense_Mutation p.E610K 0.28 tolerated(0.72) benign(0.311) TCGA-EE-A29R-06 10 17632310 17632310 G A PTPLA 3'UTR 0.45 TCGA-EE-A29R-06 10 20568699 20568699 T C PLXDC2 Missense_Mutation p.V514A 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A29R-06 10 24669854 24669854 C T KIAA1217 Silent p.V137V 0.45 TCGA-EE-A29R-06 10 24813565 24813565 A G KIAA1217 Missense_Mutation p.T924A 0.47 tolerated(0.46) benign(0.012) TCGA-EE-A29R-06 10 28272861 28272861 G A ARMC4 Missense_Mutation p.R244C 0.42 deleterious(0.02) benign(0.339) TCGA-EE-A29R-06 10 32576120 32576120 G A EPC1 Missense_Mutation p.P353L 0.46 tolerated(0.19) benign(0.118) TCGA-EE-A29R-06 10 33468989 33468989 C T NRP1 3'UTR 0.47 TCGA-EE-A29R-06 10 43612116 43612116 G A RET Missense_Mutation p.A741T 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 10 44873215 44873215 G A CXCL12 Silent p.P135P 0.29 TCGA-EE-A29R-06 10 48426627 48426627 C T GDF10 Silent p.R460R 0.46 TCGA-EE-A29R-06 10 49628347 49628347 G A MAPK8 Missense_Mutation p.M200I 0.33 deleterious(0.01) possibly_damaging(0.68) TCGA-EE-A29R-06 10 51769459 51769459 C T AGAP6 Missense_Mutation p.P525L 0.52 deleterious(0) probably_damaging(0.977) TCGA-EE-A29R-06 10 52005181 52005181 C T ASAH2 Missense_Mutation p.S54N 0.44 tolerated_low_confidence(0.46) benign(0.001) TCGA-EE-A29R-06 10 5435781 5435781 G A TUBAL3 Missense_Mutation p.S347F 0.41 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-EE-A29R-06 10 55582906 55582906 G A PCDH15 Missense_Mutation p.P1529L 0.43 deleterious_low_confidence(0.03) benign(0.009) TCGA-EE-A29R-06 10 55591182 55591182 C T PCDH15 Silent p.K1365K 0.61 TCGA-EE-A29R-06 10 55755466 55755466 C T PCDH15 Silent p.P937P 0.36 TCGA-EE-A29R-06 10 58117935 58117935 G A ZWINT 3'UTR 0.41 TCGA-EE-A29R-06 10 62671279 62671279 C T RHOBTB1 Missense_Mutation p.E8K 0.41 deleterious(0) probably_damaging(0.99) TCGA-EE-A29R-06 10 69881835 69881835 C T MYPN Missense_Mutation p.P214S 0.53 tolerated(0.17) benign(0) TCGA-EE-A29R-06 10 70178911 70178911 G A DNA2 Silent p.I1035I 0.36 TCGA-EE-A29R-06 10 70520836 70520836 C T CCAR1 Nonsense_Mutation p.R665* 0.41 TCGA-EE-A29R-06 10 71129366 71129366 C T HK1 Silent p.N291N 0.38 TCGA-EE-A29R-06 10 73447448 73447448 C T CDH23 Silent p.F269F 0.25 TCGA-EE-A29R-06 10 75187946 75187946 G A MSS51 Silent p.L33L 0.54 TCGA-EE-A29R-06 10 81373923 81373923 C T SFTPA1 3'UTR 0.45 TCGA-EE-A29R-06 10 81680742 81680742 G A MBL1P RNA 0.60 TCGA-EE-A29R-06 10 84718754 84718754 A T NRG3 Nonsense_Mutation p.K403* 0.43 TCGA-EE-A29R-06 10 88260223 88260223 G A WAPAL Silent p.P259P 0.38 TCGA-EE-A29R-06 10 95721226 95721226 G A PIPSL RNA 0.47 TCGA-EE-A29R-06 10 97007106 97007106 G A PDLIM1 Missense_Mutation p.P184L 0.36 tolerated(0.14) benign(0.002) TCGA-EE-A29R-06 10 99126278 99126278 G A RRP12 Missense_Mutation p.R1106W 0.45 deleterious(0.02) benign(0.001) TCGA-EE-A29R-06 10 99359856 99359856 C T HOGA1 Silent p.T212T 0.37 TCGA-EE-A29R-06 11 101362337 101362337 G A TRPC6 Missense_Mutation p.R360C 0.86 deleterious(0) probably_damaging(0.997) TCGA-EE-A29R-06 11 108380560 108380560 C T EXPH5 Missense_Mutation p.E1892K 0.91 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 11 111420398 111420398 C T LAYN Missense_Mutation p.H155Y 0.82 deleterious(0.01) possibly_damaging(0.6) TCGA-EE-A29R-06 11 117342593 117342593 C T DSCAML1 Missense_Mutation p.E1042K 0.88 deleterious(0.03) possibly_damaging(0.612) TCGA-EE-A29R-06 11 12315760 12315760 G A MICALCL Missense_Mutation p.R261Q 0.96 tolerated(0.28) benign(0.025) TCGA-EE-A29R-06 11 14666552 14666552 T C PDE3B Missense_Mutation p.C311R 0.92 tolerated(0.05) benign(0.096) TCGA-EE-A29R-06 11 1643198 1643198 A C KRTAP5-4 Missense_Mutation p.C42W 0.87 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29R-06 11 27016610 27016610 C T FIBIN Silent p.I179I 0.84 TCGA-EE-A29R-06 11 27078786 27078786 C T BBOX1 Silent p.F86F 0.88 TCGA-EE-A29R-06 11 31436427 31436427 G A DNAJC24 Missense_Mutation p.E61K 0.90 tolerated(0.08) probably_damaging(0.942) TCGA-EE-A29R-06 11 46747431 46747431 G A F2 Silent p.A194A 0.87 TCGA-EE-A29R-06 11 48285573 48285573 C T OR4X1 Missense_Mutation p.T54I 0.80 tolerated(0.06) benign(0.002) TCGA-EE-A29R-06 11 5254004 5254004 G A HBD 3'Flank 0.91 TCGA-EE-A29R-06 11 5602104 5602104 C T HBG2 Intron 0.82 TCGA-EE-A29R-06 11 56043405 56043405 C T OR5T1 Silent p.F97F 0.87 TCGA-EE-A29R-06 11 57886109 57886109 C T OR9I1 Missense_Mutation p.E270K 0.84 tolerated(0.23) probably_damaging(1) TCGA-EE-A29R-06 11 59814594 59814594 G A OOSP2 3'UTR 0.79 TCGA-EE-A29R-06 11 62396711 62396711 G A GANAB Missense_Mutation p.P653S 0.89 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A29R-06 11 62762219 62762219 G A SLC22A8 Silent p.T337T 0.83 TCGA-EE-A29R-06 11 65983617 65983617 C T PACS1 Silent p.L230L 0.85 TCGA-EE-A29R-06 11 6942268 6942268 G A OR2D3 Silent p.Q12Q 1.00 TCGA-EE-A29R-06 11 8474411 8474411 C T STK33 Missense_Mutation p.E277K 0.92 tolerated(0.06) benign(0.314) TCGA-EE-A29R-06 11 89531573 89531573 G A TRIM49 Missense_Mutation p.R362W 0.40 tolerated(1) benign(0) TCGA-EE-A29R-06 11 93822128 93822128 G A HEPHL1 Missense_Mutation p.G763E 0.80 tolerated(1) benign(0.002) TCGA-EE-A29R-06 12 100042400 100042400 C T FAM71C Missense_Mutation p.L150F 0.33 deleterious(0.01) probably_damaging(0.914) TCGA-EE-A29R-06 12 100482740 100482740 G A UHRF1BP1L Missense_Mutation p.S325F 0.45 deleterious(0) probably_damaging(0.961) TCGA-EE-A29R-06 12 102067206 102067206 G A MYBPC1 Missense_Mutation p.G865E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 12 104171814 104171814 G A NT5DC3 Silent p.F480F 0.37 TCGA-EE-A29R-06 12 106461486 106461486 G A NUAK1 Silent p.V360V 0.45 TCGA-EE-A29R-06 12 108642007 108642007 G A WSCD2 Missense_Mutation p.D529N 0.53 deleterious(0.03) possibly_damaging(0.52) TCGA-EE-A29R-06 12 109332694 109332694 C T SVOP Missense_Mutation p.G204E 0.33 deleterious(0) possibly_damaging(0.898) TCGA-EE-A29R-06 12 109704276 109704276 C T ACACB 3'UTR 0.38 TCGA-EE-A29R-06 12 113744297 113744297 T G SLC8B1 Intron 0.45 TCGA-EE-A29R-06 12 117964918 117964918 T C KSR2 Silent p.E603E 0.43 TCGA-EE-A29R-06 12 120995135 120995135 T C RNF10 Silent p.P232P 0.47 TCGA-EE-A29R-06 12 122620069 122620069 C T MLXIP Silent p.L630L 0.55 TCGA-EE-A29R-06 12 122710559 122710559 C T DIABLO Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A29R-06 12 123485331 123485331 G A PITPNM2 Silent p.I406I 0.35 TCGA-EE-A29R-06 12 126135452 126135452 G A TMEM132B Missense_Mutation p.D618N 0.39 tolerated(0.16) benign(0.014) TCGA-EE-A29R-06 12 128899650 128899650 C T TMEM132C Silent p.I153I 0.31 TCGA-EE-A29R-06 12 133312044 133312044 G A ANKLE2 Missense_Mutation p.L550F 0.42 tolerated(1) benign(0.002) TCGA-EE-A29R-06 12 133393301 133393301 G A GOLGA3 Silent p.D77D 0.38 TCGA-EE-A29R-06 12 14656703 14656703 C T PLBD1 3'UTR 0.37 TCGA-EE-A29R-06 12 21172237 21172237 G A SLCO1B7 Silent p.P47P 0.28 TCGA-EE-A29R-06 12 22609910 22609910 G A C2CD5 Missense_Mutation p.R907W 0.54 deleterious(0) probably_damaging(0.972) TCGA-EE-A29R-06 12 29904716 29904716 C T TMTC1 Missense_Mutation p.G274E 0.53 tolerated(0.11) benign(0.176) TCGA-EE-A29R-06 12 29904717 29904717 C T TMTC1 Missense_Mutation p.G274R 0.55 tolerated(0.07) benign(0.016) TCGA-EE-A29R-06 12 34175355 34175355 G A ALG10 5'UTR 0.31 TCGA-EE-A29R-06 12 46315779 46315779 G A SCAF11 3'UTR 0.36 TCGA-EE-A29R-06 12 51173993 51173993 G A ATF1 Missense_Mutation p.G22E 0.46 tolerated(0.07) benign(0.439) TCGA-EE-A29R-06 12 51751179 51751179 C T GALNT6 Missense_Mutation p.G519E 0.43 tolerated(0.06) benign(0.367) TCGA-EE-A29R-06 12 52964456 52964456 G A KRT74 Silent p.T335T 0.39 TCGA-EE-A29R-06 12 53162536 53162536 G A KRT76 Silent p.S626S 0.37 TCGA-EE-A29R-06 12 53585397 53585397 A C ITGB7 Missense_Mutation p.S780R 0.45 deleterious(0) benign(0.199) TCGA-EE-A29R-06 12 53585398 53585398 C T ITGB7 Missense_Mutation p.S780N 0.44 deleterious(0.01) possibly_damaging(0.87) TCGA-EE-A29R-06 12 53646604 53646604 C T MFSD5 Silent p.V102V 0.37 TCGA-EE-A29R-06 12 56077640 56077640 G A METTL7B Missense_Mutation p.G181E 0.40 deleterious(0.01) possibly_damaging(0.49) TCGA-EE-A29R-06 12 58000683 58000683 G A DTX3 Missense_Mutation p.G13S 0.38 tolerated_low_confidence(0.06) benign(0.026) TCGA-EE-A29R-06 12 6554278 6554278 C T CD27 Missense_Mutation p.P6L 0.47 tolerated(0.19) benign(0.025) TCGA-EE-A29R-06 12 68052204 68052204 C T DYRK2 Missense_Mutation p.P506L 0.43 deleterious(0.03) benign(0.281) TCGA-EE-A29R-06 12 70980945 70980945 G A PTPRB Missense_Mutation p.S718F 0.47 tolerated(0.51) benign(0.078) TCGA-EE-A29R-06 12 7653843 7653843 G A CD163 Missense_Mutation p.H117Y 0.51 tolerated(0.09) possibly_damaging(0.904) TCGA-EE-A29R-06 12 7653912 7653912 A C CD163 Missense_Mutation p.C94G 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 12 7947082 7947082 G A NANOG Missense_Mutation p.M148I 0.33 deleterious(0.05) benign(0.279) TCGA-EE-A29R-06 12 8376706 8376706 C T FAM90A1 Missense_Mutation p.E77K 0.46 tolerated(1) benign(0.091) TCGA-EE-A29R-06 12 8666187 8666187 A G CLEC4D 5'UTR 0.50 TCGA-EE-A29R-06 12 88508884 88508884 G A CEP290 Nonsense_Mutation p.Q634* 0.38 TCGA-EE-A29R-06 12 90036050 90036050 G A ATP2B1 Silent p.T97T 0.40 TCGA-EE-A29R-06 12 989020 989020 C T WNK1 Silent p.I885I 0.47 TCGA-EE-A29R-06 13 103257169 103257169 C T TPP2 Silent p.I64I 0.19 TCGA-EE-A29R-06 13 103338734 103338734 T G METTL21C Missense_Mutation p.N148H 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 13 109438085 109438085 G A MYO16 Missense_Mutation p.E182K 0.31 deleterious(0) possibly_damaging(0.85) TCGA-EE-A29R-06 13 111164294 111164294 G A COL4A2 Missense_Mutation p.G1632E 0.66 unknown(0) TCGA-EE-A29R-06 13 111164451 111164451 C A COL4A2 Missense_Mutation p.F1684L 0.29 unknown(0) TCGA-EE-A29R-06 13 113730372 113730372 G A MCF2L Silent p.Q467Q 0.18 TCGA-EE-A29R-06 13 113798181 113798181 G A F10 Silent p.G173G 0.15 TCGA-EE-A29R-06 13 113898732 113898732 G A CUL4A Missense_Mutation p.V413M 0.16 tolerated(0.08) possibly_damaging(0.786) TCGA-EE-A29R-06 13 20039417 20039417 G A TPTE2 Silent p.D218D 0.90 TCGA-EE-A29R-06 13 28623772 28623772 C T FLT3 Silent p.E294E 0.10 TCGA-EE-A29R-06 13 32776606 32776606 C T FRY Silent p.A1320A 0.14 TCGA-EE-A29R-06 13 35926330 35926330 G A NBEA Missense_Mutation p.E2017K 0.24 deleterious(0) possibly_damaging(0.88) TCGA-EE-A29R-06 13 41705266 41705266 C T KBTBD6 Missense_Mutation p.R461K 0.14 tolerated(0.33) benign(0.107) TCGA-EE-A29R-06 13 51417402 51417402 C T DLEU7 Silent p.S127S 0.39 TCGA-EE-A29R-06 13 52548411 52548411 G A ATP7B Silent p.I315I 0.26 TCGA-EE-A29R-06 13 52603381 52603381 C T UTP14C Silent p.I147I 0.29 TCGA-EE-A29R-06 13 52605076 52605076 C T UTP14C Silent p.F712F 0.26 TCGA-EE-A29R-06 13 52605077 52605077 C T UTP14C Nonsense_Mutation p.Q713* 0.26 TCGA-EE-A29R-06 13 73336202 73336202 G A DIS3 Missense_Mutation p.P734L 0.31 deleterious(0.01) benign(0.443) TCGA-EE-A29R-06 14 100135229 100135229 G A HHIPL1 Intron 0.43 TCGA-EE-A29R-06 14 101455479 101455479 G A SNORD114-28 RNA 0.38 TCGA-EE-A29R-06 14 102894633 102894633 C T TECPR2 Missense_Mutation p.S333L 0.44 deleterious(0) possibly_damaging(0.79) TCGA-EE-A29R-06 14 104206730 104206730 G A PPP1R13B Missense_Mutation p.L675F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 14 106091552 106091552 G A IGHG4 Silent p.F114F 0.17 TCGA-EE-A29R-06 14 106307359 106307359 G A IGHD Missense_Mutation p.S227F 0.50 deleterious(0) probably_damaging(0.975) TCGA-EE-A29R-06 14 106518850 106518850 C T IGHV3-7 Missense_Mutation p.E2K 0.35 tolerated_low_confidence(0.12) benign(0.019) TCGA-EE-A29R-06 14 21796673 21796673 G A RPGRIP1 Missense_Mutation p.E996K 0.50 tolerated(0.19) benign(0.23) TCGA-EE-A29R-06 14 22102906 22102906 G A OR10G2 Silent p.L31L 0.50 TCGA-EE-A29R-06 14 22133337 22133337 T C OR4E2 Missense_Mutation p.F14S 0.45 deleterious(0.02) possibly_damaging(0.772) TCGA-EE-A29R-06 14 22434182 22434182 G A TRAV12-3 Missense_Mutation p.E79K 0.48 tolerated(0.34) benign(0.044) TCGA-EE-A29R-06 14 24590118 24590118 C T DCAF11 Silent p.S388S 0.47 TCGA-EE-A29R-06 14 24655610 24655610 G A IPO4 Silent p.F296F 0.45 TCGA-EE-A29R-06 14 39716704 39716704 G A MIA2 Nonsense_Mutation p.W309* 0.38 TCGA-EE-A29R-06 14 45633577 45633577 C T FANCM Missense_Mutation p.R533C 0.50 deleterious(0) probably_damaging(0.929) TCGA-EE-A29R-06 14 50319520 50319520 A C NEMF 5'UTR 0.45 TCGA-EE-A29R-06 14 52781454 52781454 C T PTGER2 Missense_Mutation p.S63F 0.37 tolerated(0.05) benign(0.013) TCGA-EE-A29R-06 14 56755153 56755153 A G PELI2 Splice_Site p.X104_splice 0.44 TCGA-EE-A29R-06 14 56755209 56755209 G C PELI2 Missense_Mutation p.G122R 0.26 deleterious(0) probably_damaging(0.965) TCGA-EE-A29R-06 14 57863570 57863570 C T NAA30 Missense_Mutation p.S291F 0.48 deleterious(0) probably_damaging(0.95) TCGA-EE-A29R-06 14 58675766 58675766 G A ACTR10 Missense_Mutation p.V95I 0.42 tolerated(0.83) benign(0.006) TCGA-EE-A29R-06 14 65270363 65270363 C T SPTB Missense_Mutation p.V146I 0.42 tolerated(0.16) benign(0.123) TCGA-EE-A29R-06 14 71067380 71067380 C T MED6 5'UTR 0.44 TCGA-EE-A29R-06 14 74531550 74531550 C G ALDH6A1 Missense_Mutation p.G493A 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 14 75200790 75200790 C T FCF1 Silent p.Y155Y 0.42 TCGA-EE-A29R-06 14 81736965 81736965 G A STON2 Intron 0.41 TCGA-EE-A29R-06 14 86088558 86088558 G C FLRT2 Missense_Mutation p.E234Q 0.47 deleterious(0) probably_damaging(0.985) TCGA-EE-A29R-06 14 91700825 91700825 G A GPR68 Silent p.F190F 0.46 TCGA-EE-A29R-06 14 91779982 91779982 C T CCDC88C Missense_Mutation p.M726I 0.36 tolerated(0.44) benign(0) TCGA-EE-A29R-06 14 93652850 93652850 T A TMEM251 Missense_Mutation p.V115E 0.46 deleterious_low_confidence(0) benign(0.113) TCGA-EE-A29R-06 14 94744970 94744970 C T PPP4R4 Missense_Mutation p.S871F 0.56 deleterious_low_confidence(0) benign(0.2) TCGA-EE-A29R-06 14 96730346 96730346 C T BDKRB1 Silent p.L109L 0.41 TCGA-EE-A29R-06 14 99879297 99879297 G A SETD3 Silent p.T280T 0.35 TCGA-EE-A29R-06 15 20496705 20496705 G A CHEK2P2 RNA 0.17 TCGA-EE-A29R-06 15 20496721 20496721 C T CHEK2P2 RNA 0.11 TCGA-EE-A29R-06 15 20874853 20874853 T A NBEAP1 RNA 0.11 TCGA-EE-A29R-06 15 23048909 23048909 C A NIPA1 Missense_Mutation p.G304W 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 15 23811623 23811623 A T MKRN3 Missense_Mutation p.R232W 0.46 tolerated(0.06) probably_damaging(0.932) TCGA-EE-A29R-06 15 24921413 24921413 G A NPAP1 Silent p.P133P 0.37 TCGA-EE-A29R-06 15 26825533 26825533 C T GABRB3 Silent p.R205R 0.39 TCGA-EE-A29R-06 15 34110818 34110818 G A RYR3 Missense_Mutation p.E3547K 0.46 benign(0.002) TCGA-EE-A29R-06 15 34647265 34647265 C T NUTM1 Missense_Mutation p.S441F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 15 38757556 38757556 G A FAM98B Missense_Mutation p.D102N 0.39 deleterious(0.04) probably_damaging(0.957) TCGA-EE-A29R-06 15 38811572 38811572 G A RASGRP1 Silent p.L109L 0.39 TCGA-EE-A29R-06 15 42028727 42028727 C T MGA Missense_Mutation p.S1422F 0.48 deleterious(0) benign(0.361) TCGA-EE-A29R-06 15 42172360 42172360 C T SPTBN5 Missense_Mutation p.E937K 0.47 benign(0.05) TCGA-EE-A29R-06 15 48756172 48756172 A G FBN1 Silent p.C1663C 0.34 TCGA-EE-A29R-06 15 54307882 54307882 G A UNC13C Missense_Mutation p.D928N 0.44 tolerated_low_confidence(0.37) benign(0.001) TCGA-EE-A29R-06 15 54793064 54793064 C T UNC13C Missense_Mutation p.S1730F 0.32 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A29R-06 15 62212314 62212314 G A VPS13C Silent p.L2477L 0.39 TCGA-EE-A29R-06 15 64686287 64686287 C T TRIP4 Missense_Mutation p.P82S 0.38 tolerated(0.63) benign(0.001) TCGA-EE-A29R-06 15 65682665 65682665 G A IGDCC4 Nonsense_Mutation p.Q746* 0.38 TCGA-EE-A29R-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.47 tolerated(0.08) probably_damaging(0.913) TCGA-EE-A29R-06 15 79058501 79058501 G A ADAMTS7 Missense_Mutation p.S1251F 0.55 deleterious(0.02) possibly_damaging(0.472) TCGA-EE-A29R-06 15 79382679 79382679 G A RASGRF1 Silent p.F54F 0.41 TCGA-EE-A29R-06 15 94928743 94928743 C T MCTP2 Missense_Mutation p.P593S 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29R-06 15 95001390 95001390 G A MCTP2 Missense_Mutation p.E759K 0.55 deleterious(0.01) benign(0.119) TCGA-EE-A29R-06 15 99670140 99670140 C T SYNM Silent p.F524F 0.62 TCGA-EE-A29R-06 16 10721443 10721443 G A TEKT5 Silent p.T485T 0.57 TCGA-EE-A29R-06 16 14014025 14014025 G A ERCC4 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.02) benign(0.155) TCGA-EE-A29R-06 16 14014026 14014026 G A ERCC4 Missense_Mutation p.E2K 0.34 deleterious_low_confidence(0) benign(0.002) TCGA-EE-A29R-06 16 14969256 14969256 C T NOMO1 Missense_Mutation p.S778L 0.18 deleterious(0.02) benign(0.035) TCGA-EE-A29R-06 16 15198584 15198584 G A RP11-1186N24.5 RNA 0.17 TCGA-EE-A29R-06 16 15761167 15761167 C T NDE1 Silent p.L36L 0.40 TCGA-EE-A29R-06 16 1817665 1817665 G A MAPK8IP3 Missense_Mutation p.R1112K 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A29R-06 16 20384232 20384232 G A PDILT Silent p.S270S 0.30 TCGA-EE-A29R-06 16 2122932 2122932 C T TSC2 Missense_Mutation p.P768L 0.37 deleterious(0) probably_damaging(0.952) TCGA-EE-A29R-06 16 2133790 2133790 G A TSC2 Missense_Mutation p.M1326I 0.24 tolerated_low_confidence(0.42) benign(0) TCGA-EE-A29R-06 16 22167174 22167174 C T VWA3A Missense_Mutation p.S1169F 0.57 tolerated(0.08) benign(0.052) TCGA-EE-A29R-06 16 22545867 22545867 C T NPIPB5 Silent p.A521A 0.11 TCGA-EE-A29R-06 16 22545868 22545868 C T NPIPB5 Missense_Mutation p.L522F 0.12 tolerated_low_confidence(0.17) possibly_damaging(0.849) TCGA-EE-A29R-06 16 22545980 22545980 C T NPIPB5 Missense_Mutation p.P559L 0.34 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A29R-06 16 22563741 22563741 G A RP11-368J21.3 RNA 0.15 TCGA-EE-A29R-06 16 24888627 24888627 G A SLC5A11 Missense_Mutation p.D176N 0.36 tolerated(1) benign(0.074) TCGA-EE-A29R-06 16 25258413 25258413 G A ZKSCAN2 Silent p.P368P 0.47 TCGA-EE-A29R-06 16 2578260 2578260 C T AMDHD2 Silent p.I247I 0.27 TCGA-EE-A29R-06 16 26147110 26147110 G A HS3ST4 Silent p.K304K 0.29 TCGA-EE-A29R-06 16 28842289 28842289 C T ATXN2L Missense_Mutation p.S406F 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29R-06 16 47001495 47001495 G A DNAJA2 Silent p.I169I 0.57 TCGA-EE-A29R-06 16 48595627 48595627 A T N4BP1 Silent p.I309I 0.35 TCGA-EE-A29R-06 16 4867659 4867659 G A GLYR1 Silent p.I282I 0.47 TCGA-EE-A29R-06 16 5058443 5058443 G A SEC14L5 Missense_Mutation p.G532R 0.32 tolerated(0.5) benign(0.013) TCGA-EE-A29R-06 16 51173123 51173123 C T SALL1 Missense_Mutation p.D1004N 0.53 tolerated(0.63) benign(0.109) TCGA-EE-A29R-06 16 51175859 51175859 C T SALL1 Missense_Mutation p.D92N 0.46 tolerated(0.41) benign(0.001) TCGA-EE-A29R-06 16 57707357 57707357 C T GPR97 Silent p.S61S 0.31 TCGA-EE-A29R-06 16 65032504 65032504 C T CDH11 Missense_Mutation p.E162K 0.35 deleterious(0.02) benign(0.011) TCGA-EE-A29R-06 16 70977779 70977779 G A HYDIN Missense_Mutation p.T2202I 0.53 possibly_damaging(0.855) TCGA-EE-A29R-06 16 71065805 71065805 G A HYDIN Missense_Mutation p.L849F 0.32 probably_damaging(0.986) TCGA-EE-A29R-06 16 71571443 71571443 C T CHST4 Missense_Mutation p.S288F 0.54 deleterious(0.03) possibly_damaging(0.882) TCGA-EE-A29R-06 16 71690521 71690521 T C PHLPP2 Silent p.S781S 0.61 TCGA-EE-A29R-06 16 72110765 72110765 G A HPR Missense_Mutation p.E278K 0.45 tolerated(0.06) benign(0.013) TCGA-EE-A29R-06 16 77397781 77397781 A T ADAMTS18 Missense_Mutation p.V325D 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 16 77896788 77896788 G A VAT1L Splice_Site p.X241_splice 0.57 TCGA-EE-A29R-06 16 77910297 77910297 G A VAT1L Silent p.L251L 0.39 TCGA-EE-A29R-06 16 78064447 78064447 C T CLEC3A Silent p.I110I 0.59 TCGA-EE-A29R-06 16 79632785 79632785 G A MAF Missense_Mutation p.R339C 0.67 deleterious(0) probably_damaging(0.992) TCGA-EE-A29R-06 16 83251022 83251022 G A CDH13 Missense_Mutation p.G233R 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 16 83816953 83816953 G A CDH13 Silent p.T717T 0.31 TCGA-EE-A29R-06 16 88958655 88958655 C T CBFA2T3 Silent p.L206L 0.53 TCGA-EE-A29R-06 17 10310296 10310296 C T MYH8 Missense_Mutation p.E656K 0.27 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A29R-06 17 10444004 10444004 C T MYH2 Silent p.L305L 0.38 TCGA-EE-A29R-06 17 11572549 11572549 C T DNAH9 Missense_Mutation p.S967F 0.45 benign(0.344) TCGA-EE-A29R-06 17 11687808 11687808 C T DNAH9 Silent p.I2671I 0.48 TCGA-EE-A29R-06 17 11784548 11784548 G A DNAH9 Missense_Mutation p.E3542K 0.41 probably_damaging(0.976) TCGA-EE-A29R-06 17 12666968 12666968 C T MYOCD 3'UTR 0.46 TCGA-EE-A29R-06 17 15215752 15215752 G T TEKT3 Missense_Mutation p.L309I 0.38 tolerated(0.06) possibly_damaging(0.788) TCGA-EE-A29R-06 17 15532290 15532290 G A TRIM16 Missense_Mutation p.T445I 0.42 deleterious(0) probably_damaging(0.97) TCGA-EE-A29R-06 17 16456057 16456057 G A ZNF287 Missense_Mutation p.L467F 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A29R-06 17 18022396 18022396 G A MYO15A Silent p.K94K 0.48 TCGA-EE-A29R-06 17 19559734 19559734 A G ALDH3A2 Missense_Mutation p.Q176R 0.31 deleterious(0.05) possibly_damaging(0.543) TCGA-EE-A29R-06 17 26818473 26818473 C T SLC13A2 Missense_Mutation p.P247L 0.32 deleterious(0.05) possibly_damaging(0.507) TCGA-EE-A29R-06 17 26821463 26821463 A G SLC13A2 Missense_Mutation p.N463S 0.41 deleterious(0.03) benign(0.168) TCGA-EE-A29R-06 17 2966033 2966033 C T OR1D5 Missense_Mutation p.R290K 0.44 deleterious(0) benign(0) TCGA-EE-A29R-06 17 3100899 3100899 G A OR1A2 Silent p.V29V 0.36 TCGA-EE-A29R-06 17 33768696 33768696 G A SLFN13 Missense_Mutation p.S603L 0.43 deleterious(0) probably_damaging(0.953) TCGA-EE-A29R-06 17 34073275 34073275 C T GAS2L2 Missense_Mutation p.G414E 0.40 deleterious(0.01) possibly_damaging(0.868) TCGA-EE-A29R-06 17 34073276 34073276 C T GAS2L2 Missense_Mutation p.G414R 0.40 tolerated(0.08) benign(0.187) TCGA-EE-A29R-06 17 34235668 34235668 G A AC015849.16 RNA 0.45 TCGA-EE-A29R-06 17 3477212 3477212 G A SHPK Silent p.S606S 0.33 TCGA-EE-A29R-06 17 38151308 38151308 C T PSMD3 Silent p.F361F 0.43 TCGA-EE-A29R-06 17 3819559 3819559 G A P2RX1 5'UTR 0.43 TCGA-EE-A29R-06 17 39041297 39041297 G A KRT20 Silent p.S47S 0.37 TCGA-EE-A29R-06 17 40270412 40270412 G A KAT2A Silent p.S361S 0.47 TCGA-EE-A29R-06 17 42818719 42818719 C T DBF4B Silent p.F243F 0.50 TCGA-EE-A29R-06 17 45299745 45299745 G A MYL4 Splice_Site p.X163_splice 0.36 TCGA-EE-A29R-06 17 4622657 4622657 G A ARRB2 Missense_Mutation p.G308S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29R-06 17 48277309 48277309 C T COL1A1 Splice_Site p.X35_splice 0.48 TCGA-EE-A29R-06 17 48608750 48608750 C T MYCBPAP Silent p.P972P 0.42 TCGA-EE-A29R-06 17 48674097 48674097 C T CACNA1G Missense_Mutation p.S1024F 0.63 deleterious(0.05) benign(0.104) TCGA-EE-A29R-06 17 49272580 49272580 G A MBTD1 Missense_Mutation p.P456L 0.53 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29R-06 17 5462682 5462682 C T NLRP1 Missense_Mutation p.G445E 0.38 tolerated(0.58) benign(0.329) TCGA-EE-A29R-06 17 61621682 61621682 G A KCNH6 Missense_Mutation p.R805K 0.31 tolerated_low_confidence(0.6) benign(0.001) TCGA-EE-A29R-06 17 61987899 61987899 C T CSHL1 Intron 0.45 TCGA-EE-A29R-06 17 62892192 62892192 G A LRRC37A3 Missense_Mutation p.S395L 0.38 tolerated(0.22) possibly_damaging(0.622) TCGA-EE-A29R-06 17 65104786 65104786 G A HELZ Nonsense_Mutation p.Q1516* 0.41 TCGA-EE-A29R-06 17 65105286 65105286 G A HELZ Silent p.L1479L 0.44 TCGA-EE-A29R-06 17 6554918 6554918 G A MED31 5'UTR 0.21 TCGA-EE-A29R-06 17 6596446 6596446 C T SLC13A5 Missense_Mutation p.D398N 0.40 tolerated(0.76) benign(0.031) TCGA-EE-A29R-06 17 71166015 71166015 A G SSTR2 Missense_Mutation p.N186S 0.44 tolerated(0.38) benign(0.016) TCGA-EE-A29R-06 17 73096889 73096889 C T SLC16A5 Silent p.F377F 0.36 TCGA-EE-A29R-06 17 73144668 73144668 A G HN1 Missense_Mutation p.F52S 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29R-06 17 73625544 73625544 C T RECQL5 Silent p.K653K 0.43 TCGA-EE-A29R-06 17 74538642 74538642 G A PRCD Missense_Mutation p.E51K 0.26 tolerated_low_confidence(0.07) benign(0) TCGA-EE-A29R-06 17 74934093 74934093 C T MGAT5B Silent p.I493I 0.34 TCGA-EE-A29R-06 17 77043690 77043690 G A C1QTNF1 Silent p.R122R 0.38 TCGA-EE-A29R-06 17 7948633 7948633 C T ALOX15B Silent p.F309F 0.52 TCGA-EE-A29R-06 17 8064139 8064139 G A VAMP2 3'UTR 0.37 TCGA-EE-A29R-06 18 14542773 14542773 C T POTEC Missense_Mutation p.D125N 0.33 tolerated(0.08) benign(0.045) TCGA-EE-A29R-06 18 21121119 21121119 G A NPC1 Silent p.S809S 0.42 TCGA-EE-A29R-06 18 22056862 22056862 C T HRH4 Missense_Mutation p.S170L 0.39 tolerated(0.6) benign(0.022) TCGA-EE-A29R-06 18 23598210 23598210 C T SS18 3'UTR 0.48 TCGA-EE-A29R-06 18 2740736 2740736 C T SMCHD1 Nonsense_Mutation p.Q1184* 0.47 TCGA-EE-A29R-06 18 29049078 29049078 G A DSG3 Missense_Mutation p.E555K 0.42 deleterious(0.03) benign(0.001) TCGA-EE-A29R-06 18 31323969 31323969 C T ASXL3 Missense_Mutation p.S1386F 0.51 possibly_damaging(0.701) TCGA-EE-A29R-06 18 34324132 34324132 C T FHOD3 Silent p.I1164I 0.43 TCGA-EE-A29R-06 18 43262464 43262464 C T SLC14A2 Nonsense_Mutation p.Q915* 0.43 TCGA-EE-A29R-06 18 44555409 44555409 C T TCEB3C Missense_Mutation p.E269K 0.19 tolerated(0.73) probably_damaging(0.971) TCGA-EE-A29R-06 18 47463663 47463663 G A MYO5B Silent p.P619P 0.32 TCGA-EE-A29R-06 18 51057053 51057053 T A DCC 3'UTR 0.56 TCGA-EE-A29R-06 18 52265188 52265188 C T DYNAP Nonsense_Mutation p.Q149* 0.35 TCGA-EE-A29R-06 18 56587044 56587044 G A ZNF532 Missense_Mutation p.A509T 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29R-06 18 61225608 61225608 C T SERPINB12 Silent p.S64S 0.39 TCGA-EE-A29R-06 18 61306534 61306534 G A SERPINB4 Missense_Mutation p.S218F 0.50 tolerated(0.69) benign(0.018) TCGA-EE-A29R-06 18 61585198 61585198 G A SERPINB10 Splice_Site p.X79_splice 0.42 TCGA-EE-A29R-06 18 63547742 63547742 G A CDH7 Missense_Mutation p.G657D 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 18 76754586 76754586 G A SALL3 Silent p.V865V 0.46 TCGA-EE-A29R-06 18 77171485 77171485 C T NFATC1 Missense_Mutation p.P391S 0.55 tolerated(0.31) probably_damaging(0.979) TCGA-EE-A29R-06 19 10084991 10084991 G A COL5A3 Missense_Mutation p.P1146S 0.16 probably_damaging(0.998) TCGA-EE-A29R-06 19 10473044 10473044 G A TYK2 Missense_Mutation p.S522F 0.31 tolerated(0.59) possibly_damaging(0.519) TCGA-EE-A29R-06 19 10570295 10570295 C T PDE4A Missense_Mutation p.R409C 0.56 tolerated(0.05) possibly_damaging(0.723) TCGA-EE-A29R-06 19 11942794 11942794 C T ZNF440 Missense_Mutation p.P268L 0.62 tolerated(0.35) possibly_damaging(0.517) TCGA-EE-A29R-06 19 12089968 12089968 C T ZNF763 3'UTR 0.61 TCGA-EE-A29R-06 19 12383432 12383432 G A ZNF44 Silent p.F594F 0.52 TCGA-EE-A29R-06 19 12575478 12575478 G A ZNF709 Missense_Mutation p.H420Y 0.23 tolerated(1) benign(0.002) TCGA-EE-A29R-06 19 13428095 13428095 C T CACNA1A Silent p.L462L 0.40 TCGA-EE-A29R-06 19 14030636 14030636 C T CC2D1A Missense_Mutation p.P410S 0.50 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A29R-06 19 14521959 14521959 G A DDX39A Missense_Mutation p.S152F 0.53 deleterious(0) benign(0.027) TCGA-EE-A29R-06 19 14730271 14730271 G A EMR3 Missense_Mutation p.P645S 0.56 tolerated(0.12) benign(0.003) TCGA-EE-A29R-06 19 15164333 15164333 T G CASP14 Missense_Mutation p.L23R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 19 15469800 15469800 T C AKAP8 Missense_Mutation p.K534R 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29R-06 19 15469802 15469802 C T AKAP8 Silent p.V533V 0.32 TCGA-EE-A29R-06 19 1556354 1556354 G A MEX3D Silent p.A388A 0.80 TCGA-EE-A29R-06 19 15871654 15871654 C T LLNLR-249E10.1 RNA 0.50 TCGA-EE-A29R-06 19 16024554 16024554 C T CYP4F11 Silent p.A521A 0.60 TCGA-EE-A29R-06 19 16860876 16860876 G A NWD1 Missense_Mutation p.V475I 0.49 tolerated(0.62) benign(0.008) TCGA-EE-A29R-06 19 16942440 16942440 G T SIN3B Missense_Mutation p.Q121H 0.33 tolerated(0.2) benign(0.015) TCGA-EE-A29R-06 19 17108112 17108112 C T CPAMD8 Missense_Mutation p.D349N 0.39 tolerated(0.13) possibly_damaging(0.461) TCGA-EE-A29R-06 19 17999160 17999160 G A SLC5A5 Missense_Mutation p.R516Q 0.34 tolerated(0.12) benign(0.011) TCGA-EE-A29R-06 19 18324247 18324247 G A PDE4C Silent p.T513T 0.58 TCGA-EE-A29R-06 19 18507726 18507726 C T LRRC25 Silent p.R16R 0.51 TCGA-EE-A29R-06 19 18968229 18968229 T G UPF1 Missense_Mutation p.V690G 0.31 tolerated(0.1) benign(0.103) TCGA-EE-A29R-06 19 18975061 18975061 G A UPF1 Splice_Site p.X953_splice 0.35 TCGA-EE-A29R-06 19 22941120 22941120 G A ZNF99 Missense_Mutation p.H531Y 0.17 deleterious(0) possibly_damaging(0.848) TCGA-EE-A29R-06 19 30936068 30936068 G A ZNF536 Missense_Mutation p.M533I 0.59 tolerated(0.1) benign(0.006) TCGA-EE-A29R-06 19 35251315 35251315 G A ZNF599 Nonsense_Mutation p.Q131* 0.62 TCGA-EE-A29R-06 19 362120 362120 C T THEG 3'UTR 0.69 TCGA-EE-A29R-06 19 36572471 36572471 A G WDR62 Missense_Mutation p.N457S 0.37 tolerated(0.08) benign(0.06) TCGA-EE-A29R-06 19 37118320 37118320 C T ZNF382 Silent p.L507L 0.48 TCGA-EE-A29R-06 19 3746787 3746787 G A TJP3 Silent p.L754L 0.64 TCGA-EE-A29R-06 19 39234686 39234686 C T CAPN12 Silent p.L40L 0.51 TCGA-EE-A29R-06 19 39819629 39819629 C T GMFG Intron 0.30 TCGA-EE-A29R-06 19 39870640 39870640 C T SAMD4B Missense_Mutation p.S522F 0.33 deleterious(0) probably_damaging(0.977) TCGA-EE-A29R-06 19 39871305 39871305 C T SAMD4B Silent p.F576F 0.58 TCGA-EE-A29R-06 19 40196569 40196569 C T LGALS14 Missense_Mutation p.H8Y 0.56 deleterious_low_confidence(0.01) benign(0.043) TCGA-EE-A29R-06 19 41056141 41056141 C T SPTBN4 Intron 0.30 TCGA-EE-A29R-06 19 41072173 41072173 G A SPTBN4 Missense_Mutation p.E2082K 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29R-06 19 42219752 42219752 C T CEACAM5 Missense_Mutation p.S296F 0.34 tolerated(0.59) unknown(0) TCGA-EE-A29R-06 19 42222157 42222157 C T CEACAM5 Silent p.L450L 0.56 TCGA-EE-A29R-06 19 42485983 42485983 C T ATP1A3 Missense_Mutation p.G411E 0.27 tolerated(0.09) probably_damaging(1) TCGA-EE-A29R-06 19 43233974 43233974 C T PSG3 Missense_Mutation p.R315Q 0.34 tolerated(0.25) benign(0.015) TCGA-EE-A29R-06 19 43244488 43244488 C T PSG3 Missense_Mutation p.G17R 0.31 tolerated(0.16) possibly_damaging(0.835) TCGA-EE-A29R-06 19 43371925 43371925 C T PSG1 3'UTR 0.63 TCGA-EE-A29R-06 19 43406463 43406463 G A PSG6 3'Flank 0.51 TCGA-EE-A29R-06 19 43702363 43702363 C T PSG4 Silent p.V165V 0.31 TCGA-EE-A29R-06 19 43967920 43967920 G A LYPD3 Silent p.I71I 0.67 TCGA-EE-A29R-06 19 44610893 44610893 C T ZNF224 Missense_Mutation p.H194Y 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29R-06 19 44933093 44933093 G A ZNF229 Silent p.V621V 0.37 TCGA-EE-A29R-06 19 4517588 4517588 C T PLIN4 Silent p.E43E 0.48 TCGA-EE-A29R-06 19 46857023 46857023 C T PPP5C Missense_Mutation p.A47V 0.24 deleterious(0) probably_damaging(0.983) TCGA-EE-A29R-06 19 47823664 47823664 C T C5AR1 Silent p.G210G 0.30 TCGA-EE-A29R-06 19 48789585 48789585 C T ZNF114 Missense_Mutation p.S235F 0.25 deleterious(0.03) possibly_damaging(0.485) TCGA-EE-A29R-06 19 49674964 49674964 G A TRPM4 Missense_Mutation p.E330K 0.50 tolerated(0.4) benign(0.21) TCGA-EE-A29R-06 19 51453182 51453182 G A KLK5 Silent p.P88P 0.29 TCGA-EE-A29R-06 19 51919278 51919278 G A SIGLEC10 Missense_Mutation p.P300S 0.29 deleterious(0.04) possibly_damaging(0.817) TCGA-EE-A29R-06 19 52272349 52272349 C T FPR2 Silent p.I146I 0.32 TCGA-EE-A29R-06 19 52448624 52448624 A T ZNF613 Missense_Mutation p.K496N 0.40 tolerated(0.08) possibly_damaging(0.677) TCGA-EE-A29R-06 19 52825180 52825180 C T ZNF480 Missense_Mutation p.T226I 0.53 tolerated(0.21) benign(0.055) TCGA-EE-A29R-06 19 53770022 53770022 C T VN1R4 Nonsense_Mutation p.W299* 0.25 TCGA-EE-A29R-06 19 55086907 55086907 C T LILRA2 Silent p.F280F 0.60 TCGA-EE-A29R-06 19 55805463 55805463 C T BRSK1 Silent p.S179S 0.31 TCGA-EE-A29R-06 19 56369458 56369458 C T NLRP4 Silent p.F233F 0.57 TCGA-EE-A29R-06 19 56424264 56424264 G A NLRP13 Silent p.L307L 0.47 TCGA-EE-A29R-06 19 5685010 5685010 G A HSD11B1L Silent p.Q28Q 0.23 TCGA-EE-A29R-06 19 57327355 57327355 G A PEG3 Missense_Mutation p.R819C 0.34 tolerated(0.22) benign(0) TCGA-EE-A29R-06 19 58132874 58132874 C T ZNF134 3'UTR 0.57 TCGA-EE-A29R-06 19 8645836 8645836 G A ADAMTS10 Nonsense_Mutation p.Q1085* 0.22 TCGA-EE-A29R-06 19 9047238 9047238 T C MUC16 Missense_Mutation p.I11465V 0.61 benign(0.001) TCGA-EE-A29R-06 19 9058153 9058153 G A MUC16 Silent p.L9765L 0.54 TCGA-EE-A29R-06 19 9060828 9060828 G A MUC16 Missense_Mutation p.S8873F 0.35 unknown(0) TCGA-EE-A29R-06 19 9067275 9067275 G A MUC16 Missense_Mutation p.S6724F 0.30 unknown(0) TCGA-EE-A29R-06 19 9075800 9075800 G A MUC16 Silent p.I3882I 0.43 TCGA-EE-A29R-06 1 10211599 10211599 C T UBE4B Missense_Mutation p.S969F 0.93 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A29R-06 1 109643093 109643093 C T TMEM167B 3'Flank 1.00 TCGA-EE-A29R-06 1 109643094 109643094 C T TMEM167B 3'Flank 0.92 TCGA-EE-A29R-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.87 tolerated(0.06) benign(0.006) TCGA-EE-A29R-06 1 120056762 120056762 C T HSD3B1 Silent p.L206L 0.87 TCGA-EE-A29R-06 1 12835995 12835995 G A PRAMEF12 Silent p.T199T 0.80 TCGA-EE-A29R-06 1 146658739 146658739 T A FMO5 Missense_Mutation p.N448Y 0.30 deleterious(0) probably_damaging(0.918) TCGA-EE-A29R-06 1 148341974 148341974 G A NBPF20 Missense_Mutation p.P200L 0.26 probably_damaging(0.911) TCGA-EE-A29R-06 1 149759964 149759964 G A FCGR1A Missense_Mutation p.G117E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 1 150998085 150998085 C T PRUNE Silent p.F205F 0.25 TCGA-EE-A29R-06 1 151018346 151018346 C T BNIPL Missense_Mutation p.R309W 0.34 deleterious(0.01) benign(0.126) TCGA-EE-A29R-06 1 152191500 152191500 G A HRNR Nonsense_Mutation p.Q869* 0.53 TCGA-EE-A29R-06 1 152323387 152323387 C T FLG2 Missense_Mutation p.G2292E 0.45 benign(0.235) TCGA-EE-A29R-06 1 152800131 152800131 C T LCE1A Silent p.S61S 0.45 TCGA-EE-A29R-06 1 153665653 153665653 C T NPR1 Nonsense_Mutation p.R1035* 0.35 TCGA-EE-A29R-06 1 154522891 154522891 G A UBE2Q1 3'UTR 0.48 TCGA-EE-A29R-06 1 155217666 155217666 G A FAM189B Silent p.S638S 0.56 TCGA-EE-A29R-06 1 156144622 156144622 C T SEMA4A Missense_Mutation p.S442L 0.32 tolerated(0.82) benign(0.009) TCGA-EE-A29R-06 1 156376944 156376944 G A C1orf61 Silent p.S117S 0.27 TCGA-EE-A29R-06 1 156509647 156509647 G A IQGAP3 Missense_Mutation p.L959F 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A29R-06 1 156526411 156526411 A G IQGAP3 Missense_Mutation p.C402R 0.36 tolerated(0.44) benign(0.042) TCGA-EE-A29R-06 1 158390018 158390018 C T OR10K2 Silent p.L213L 0.37 TCGA-EE-A29R-06 1 158686990 158686990 G A OR6K3 Missense_Mutation p.L306F 0.40 tolerated(0.71) benign(0) TCGA-EE-A29R-06 1 159409674 159409674 C T OR10J1 Silent p.F42F 0.46 TCGA-EE-A29R-06 1 160718131 160718131 G A SLAMF7 Missense_Mutation p.G68D 0.37 tolerated(0.38) benign(0.003) TCGA-EE-A29R-06 1 160970542 160970542 G A F11R Silent p.F89F 0.56 TCGA-EE-A29R-06 1 168683549 168683549 C T DPT Missense_Mutation p.G114E 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 1 169390657 169390657 G A CCDC181 Nonsense_Mutation p.R338* 0.37 TCGA-EE-A29R-06 1 169511204 169511204 G A F5 Missense_Mutation p.P1042S 0.22 tolerated(0.06) possibly_damaging(0.57) TCGA-EE-A29R-06 1 169566244 169566244 G A SELP Missense_Mutation p.P626S 0.26 tolerated(0.23) possibly_damaging(0.559) TCGA-EE-A29R-06 1 172579019 172579019 C T SUCO Missense_Mutation p.P1129S 0.23 tolerated(0.17) benign(0.082) TCGA-EE-A29R-06 1 172579020 172579020 C T SUCO Missense_Mutation p.P1129L 0.24 tolerated(0.08) possibly_damaging(0.493) TCGA-EE-A29R-06 1 174606552 174606552 C T RABGAP1L Missense_Mutation p.R584C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 1 175116109 175116109 C T TNN Missense_Mutation p.P1268S 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A29R-06 1 176525795 176525795 G A PAPPA2 Missense_Mutation p.E113K 0.37 tolerated_low_confidence(0.59) benign(0.002) TCGA-EE-A29R-06 1 177226250 177226250 C T BRINP2 Intron 0.62 TCGA-EE-A29R-06 1 177901873 177901873 G A SEC16B Silent p.S964S 0.32 TCGA-EE-A29R-06 1 177930760 177930760 G A SEC16B Missense_Mutation p.P251L 0.44 deleterious(0) possibly_damaging(0.517) TCGA-EE-A29R-06 1 180151404 180151404 C T QSOX1 Silent p.F234F 0.32 TCGA-EE-A29R-06 1 183510133 183510133 C T SMG7 Missense_Mutation p.S437F 0.52 deleterious(0) possibly_damaging(0.646) TCGA-EE-A29R-06 1 183532329 183532329 C T NCF2 Splice_Site p.X430_splice 0.48 TCGA-EE-A29R-06 1 186277348 186277348 G A PRG4 Missense_Mutation p.E833K 0.49 unknown(0) TCGA-EE-A29R-06 1 190067595 190067595 C T BRINP3 Nonsense_Mutation p.W618* 0.36 TCGA-EE-A29R-06 1 196438156 196438156 C T KCNT2 Missense_Mutation p.E143K 0.38 deleterious(0) probably_damaging(0.965) TCGA-EE-A29R-06 1 196953100 196953100 C T CFHR5 Missense_Mutation p.S88F 0.51 tolerated(0.29) benign(0) TCGA-EE-A29R-06 1 197021831 197021831 G A F13B Silent p.T496T 0.43 TCGA-EE-A29R-06 1 197886818 197886818 A G LHX9 5'UTR 0.42 TCGA-EE-A29R-06 1 20009888 20009888 G A TMCO4 Missense_Mutation p.A517V 0.90 tolerated(0.12) benign(0.033) TCGA-EE-A29R-06 1 201013573 201013573 C T CACNA1S Silent p.R1560R 0.33 TCGA-EE-A29R-06 1 202715368 202715368 G A KDM5B Silent p.F700F 0.43 TCGA-EE-A29R-06 1 207640050 207640050 C T CR2 Missense_Mutation p.P80S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 1 209880108 209880108 A C HSD11B1 Missense_Mutation p.T92P 0.40 deleterious(0.04) benign(0.224) TCGA-EE-A29R-06 1 209950783 209950783 C T TRAF3IP3 Silent p.C380C 0.44 TCGA-EE-A29R-06 1 210857019 210857019 C T KCNH1 Silent p.S858S 0.50 TCGA-EE-A29R-06 1 213161997 213161997 G A VASH2 3'UTR 0.50 TCGA-EE-A29R-06 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.25 deleterious(0) probably_damaging(0.977) TCGA-EE-A29R-06 1 22151093 22151093 G C HSPG2 Silent p.P4227P 0.87 TCGA-EE-A29R-06 1 225718286 225718286 G A ENAH Missense_Mutation p.P135L 0.50 deleterious(0) unknown(0) TCGA-EE-A29R-06 1 228554256 228554256 G T OBSCN Silent p.L7401L 0.42 TCGA-EE-A29R-06 1 229738377 229738377 G A TAF5L Silent p.L179L 0.54 TCGA-EE-A29R-06 1 229772119 229772119 C T URB2 Missense_Mutation p.L587F 0.52 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A29R-06 1 231830229 231830229 C T DISC1 Missense_Mutation p.P242L 0.23 tolerated(0.1) benign(0.056) TCGA-EE-A29R-06 1 232600814 232600814 G A SIPA1L2 Silent p.F864F 0.31 TCGA-EE-A29R-06 1 233750217 233750217 G A KCNK1 Nonsense_Mutation p.W100* 0.44 TCGA-EE-A29R-06 1 236212240 236212240 G A NID1 Missense_Mutation p.S92F 0.24 deleterious(0.04) benign(0.003) TCGA-EE-A29R-06 1 237755070 237755070 A C RYR2 Missense_Mutation p.S1398R 0.42 possibly_damaging(0.731) TCGA-EE-A29R-06 1 237794791 237794791 G A RYR2 Missense_Mutation p.E2169K 0.18 probably_damaging(1) TCGA-EE-A29R-06 1 240493991 240493991 G A FMN2 Missense_Mutation p.G1509E 0.49 probably_damaging(1) TCGA-EE-A29R-06 1 240635664 240635664 C T FMN2 Intron 0.49 TCGA-EE-A29R-06 1 246921631 246921631 C T SCCPDH Missense_Mutation p.P223L 0.41 deleterious(0.02) benign(0.323) TCGA-EE-A29R-06 1 247599273 247599273 T C NLRP3 Silent p.L834L 0.35 TCGA-EE-A29R-06 1 247737516 247737516 C T GCSAML Silent p.S80S 0.52 TCGA-EE-A29R-06 1 248004731 248004731 G A OR11L1 Silent p.G156G 0.45 TCGA-EE-A29R-06 1 248263646 248263646 C T OR2L13 3'UTR 0.52 TCGA-EE-A29R-06 1 248343804 248343804 G A OR2M2 Missense_Mutation p.E173K 0.24 tolerated(0.16) benign(0.119) TCGA-EE-A29R-06 1 24996708 24996708 C T SRRM1 Missense_Mutation p.P768S 0.90 unknown(0) TCGA-EE-A29R-06 1 32688001 32688001 C T EIF3I 5'UTR 0.89 TCGA-EE-A29R-06 1 3328230 3328230 C T PRDM16 Missense_Mutation p.P490L 0.92 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A29R-06 1 34100926 34100926 G A CSMD2 Silent p.P1618P 0.73 TCGA-EE-A29R-06 1 40767562 40767562 C T COL9A2 Splice_Site p.X598_splice 0.94 TCGA-EE-A29R-06 1 47504342 47504342 C T CYP4X1 Silent p.I262I 0.79 TCGA-EE-A29R-06 1 50610836 50610836 G A ELAVL4 Missense_Mutation p.E90K 0.91 tolerated(0.08) benign(0.284) TCGA-EE-A29R-06 1 54605456 54605456 G A CDCP2 Missense_Mutation p.R363C 0.94 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A29R-06 1 74506974 74506974 C T LRRIQ3 Silent p.E547E 0.84 TCGA-EE-A29R-06 1 92546105 92546105 C A BTBD8 5'UTR 0.88 TCGA-EE-A29R-06 1 94140254 94140254 G A BCAR3 Missense_Mutation p.S78F 0.85 tolerated(0.07) possibly_damaging(0.759) TCGA-EE-A29R-06 20 10032312 10032312 G A ANKEF1 Missense_Mutation p.A549T 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 20 19674039 19674039 C T SLC24A3 Silent p.I487I 0.46 TCGA-EE-A29R-06 20 22563708 22563708 C T FOXA2 Missense_Mutation p.G58S 0.29 tolerated(1) benign(0.019) TCGA-EE-A29R-06 20 29960810 29960810 C T DEFB118 Missense_Mutation p.P70L 0.53 deleterious(0.01) benign(0.023) TCGA-EE-A29R-06 20 31890731 31890731 A G BPIFB1 Missense_Mutation p.K331E 0.50 tolerated(0.07) benign(0.003) TCGA-EE-A29R-06 20 3553521 3553521 C T ATRN Missense_Mutation p.S672L 0.24 tolerated(0.39) benign(0) TCGA-EE-A29R-06 20 40126847 40126847 G A CHD6 Missense_Mutation p.P312L 0.24 tolerated(0.34) benign(0.015) TCGA-EE-A29R-06 20 41306689 41306689 C T PTPRT Missense_Mutation p.E324K 0.56 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A29R-06 20 43882291 43882291 A C SLPI Missense_Mutation p.C57G 0.37 deleterious(0.01) probably_damaging(1) TCGA-EE-A29R-06 20 44054260 44054260 G A PIGT Missense_Mutation p.E511K 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A29R-06 20 55918423 55918423 G A SPO11 Missense_Mutation p.M366I 0.34 tolerated(0.11) benign(0.017) TCGA-EE-A29R-06 20 56140647 56140647 C T PCK1 Silent p.L552L 0.31 TCGA-EE-A29R-06 20 62737910 62737910 C T NPBWR2 Missense_Mutation p.G92E 0.74 tolerated(1) possibly_damaging(0.478) TCGA-EE-A29R-06 20 62839399 62839399 G A MYT1 Missense_Mutation p.E284K 0.45 benign(0.003) TCGA-EE-A29R-06 21 10906896 10906896 G A TPTE 3'UTR 0.30 TCGA-EE-A29R-06 21 10951367 10951367 G A TPTE Silent p.F115F 0.37 TCGA-EE-A29R-06 21 31797959 31797959 G A KRTAP13-3 Missense_Mutation p.S91F 0.58 deleterious(0) possibly_damaging(0.492) TCGA-EE-A29R-06 21 31802635 31802635 C T KRTAP13-4 Silent p.S14S 0.36 TCGA-EE-A29R-06 21 38098425 38098425 C T SIM2 Silent p.I183I 0.42 TCGA-EE-A29R-06 21 40184975 40184975 C T ETS2 Missense_Mutation p.P41S 0.30 tolerated(0.44) benign(0.024) TCGA-EE-A29R-06 21 41427706 41427706 C T DSCAM Missense_Mutation p.D1661N 0.35 tolerated(0.09) probably_damaging(0.972) TCGA-EE-A29R-06 21 41447102 41447102 C T DSCAM Missense_Mutation p.E1584K 0.54 tolerated(0.4) benign(0.003) TCGA-EE-A29R-06 21 42080652 42080652 G A DSCAM Missense_Mutation p.S30F 0.58 deleterious(0.01) probably_damaging(1) TCGA-EE-A29R-06 21 43319197 43319197 C T C2CD2 Missense_Mutation p.S612N 0.49 deleterious(0.03) possibly_damaging(0.884) TCGA-EE-A29R-06 21 43319199 43319199 C A C2CD2 Missense_Mutation p.M611I 0.47 deleterious(0.01) benign(0) TCGA-EE-A29R-06 21 43332514 43332514 C T C2CD2 Missense_Mutation p.D294N 0.65 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A29R-06 21 43913174 43913174 G A RSPH1 Missense_Mutation p.R24W 0.32 deleterious(0) unknown(0) TCGA-EE-A29R-06 21 45716284 45716284 G A AIRE Missense_Mutation p.E508K 0.29 deleterious(0) benign(0.283) TCGA-EE-A29R-06 21 46020577 46020577 T C KRTAP10-7 Missense_Mutation p.V19A 0.46 tolerated(0.12) possibly_damaging(0.708) TCGA-EE-A29R-06 21 46276172 46276172 G A PTTG1IP Missense_Mutation p.P129S 0.59 tolerated(0.41) benign(0.09) TCGA-EE-A29R-06 22 16449538 16449538 G A OR11H1 Silent p.V89V 0.18 TCGA-EE-A29R-06 22 17072405 17072405 T G CCT8L2 Missense_Mutation p.K346Q 0.90 tolerated(0.29) benign(0.107) TCGA-EE-A29R-06 22 17288908 17288908 G A XKR3 Missense_Mutation p.S19L 0.93 tolerated(0.9) benign(0) TCGA-EE-A29R-06 22 20760987 20760987 C G ZNF74 Missense_Mutation p.S555W 0.88 deleterious(0) probably_damaging(0.996) TCGA-EE-A29R-06 22 20781786 20781786 G A SCARF2 Missense_Mutation p.P536L 0.95 deleterious(0.01) benign(0.187) TCGA-EE-A29R-06 22 26181399 26181399 G A MYO18B Missense_Mutation p.E773K 0.91 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A29R-06 22 26422812 26422812 G A MYO18B Missense_Mutation p.R2291K 0.91 deleterious(0.03) possibly_damaging(0.884) TCGA-EE-A29R-06 22 26830121 26830121 C T ASPHD2 Silent p.S180S 0.92 TCGA-EE-A29R-06 22 36587483 36587483 A G APOL4 Silent p.F231F 0.91 TCGA-EE-A29R-06 22 38463714 38463714 G T PICK1 Nonsense_Mutation p.E96* 0.92 TCGA-EE-A29R-06 22 39917600 39917600 C T ATF4 Silent p.S50S 0.92 TCGA-EE-A29R-06 22 41252455 41252455 G A ST13 Silent p.F30F 0.53 TCGA-EE-A29R-06 22 45309898 45309898 G A PHF21B Missense_Mutation p.P212L 0.96 tolerated_low_confidence(0.21) benign(0.002) TCGA-EE-A29R-06 22 45312509 45312509 A G PHF21B Missense_Mutation p.V72A 0.95 deleterious(0) probably_damaging(0.99) TCGA-EE-A29R-06 22 50499980 50499980 G A MLC1 3'UTR 0.89 TCGA-EE-A29R-06 2 100175416 100175416 G A AFF3 Missense_Mutation p.A1094V 0.51 deleterious(0) probably_damaging(0.982) TCGA-EE-A29R-06 2 100210471 100210471 G A AFF3 Missense_Mutation p.P576L 0.27 deleterious(0.04) benign(0.332) TCGA-EE-A29R-06 2 102792980 102792980 G A IL1R1 Missense_Mutation p.E491K 0.35 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A29R-06 2 103001376 103001376 G A IL18R1 Missense_Mutation p.E243K 0.31 tolerated(0.32) benign(0.014) TCGA-EE-A29R-06 2 103001406 103001406 G A IL18R1 Missense_Mutation p.E253K 0.33 tolerated(1) benign(0.004) TCGA-EE-A29R-06 2 103040504 103040504 C T IL18RAP Missense_Mutation p.P102S 0.35 tolerated(0.76) benign(0.01) TCGA-EE-A29R-06 2 109964349 109964349 T C SH3RF3 Missense_Mutation p.Y265H 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 2 113785451 113785451 G A IL36B Intron 0.32 TCGA-EE-A29R-06 2 127950810 127950810 C T CYP27C1 Missense_Mutation p.E288K 0.31 tolerated(0.6) possibly_damaging(0.825) TCGA-EE-A29R-06 2 130900819 130900819 G A CCDC74B Intron 0.39 TCGA-EE-A29R-06 2 131519695 131519695 C T AMER3 Missense_Mutation p.S17F 0.50 deleterious(0) possibly_damaging(0.906) TCGA-EE-A29R-06 2 133175391 133175391 G A GPR39 Missense_Mutation p.G259E 0.51 tolerated(0.48) benign(0.142) TCGA-EE-A29R-06 2 138425405 138425405 C T THSD7B Silent p.F1574F 0.24 TCGA-EE-A29R-06 2 141135827 141135827 G A LRP1B Silent p.F3520F 0.50 TCGA-EE-A29R-06 2 141135848 141135848 C T LRP1B Silent p.Q3513Q 0.51 TCGA-EE-A29R-06 2 141680542 141680542 C T LRP1B Nonsense_Mutation p.W1104* 0.53 TCGA-EE-A29R-06 2 149226733 149226733 C T MBD5 Silent p.L407L 0.37 TCGA-EE-A29R-06 2 149240891 149240891 C T MBD5 Missense_Mutation p.P911S 0.54 tolerated(0.47) unknown(0) TCGA-EE-A29R-06 2 15769734 15769734 C T DDX1 Silent p.Y628Y 0.38 TCGA-EE-A29R-06 2 158272240 158272240 T C CYTIP Silent p.K343K 0.57 TCGA-EE-A29R-06 2 163374648 163374648 A T KCNH7 Missense_Mutation p.F162I 0.47 tolerated(0.1) benign(0.001) TCGA-EE-A29R-06 2 165755239 165755239 C T SLC38A11 Missense_Mutation p.G310D 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 2 166905439 166905439 C T SCN1A Missense_Mutation p.G329S 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A29R-06 2 168101383 168101383 G A XIRP2 Missense_Mutation p.D1161N 0.22 probably_damaging(0.944) TCGA-EE-A29R-06 2 168108064 168108064 G A XIRP2 Missense_Mutation p.D3388N 0.52 benign(0.003) TCGA-EE-A29R-06 2 170058370 170058370 G A LRP2 Silent p.T2740T 0.38 TCGA-EE-A29R-06 2 174988343 174988343 G A OLA1 Missense_Mutation p.H204Y 0.45 deleterious(0.01) possibly_damaging(0.544) TCGA-EE-A29R-06 2 17697867 17697867 C T RAD51AP2 Missense_Mutation p.E606K 0.40 tolerated(0.87) benign(0.007) TCGA-EE-A29R-06 2 177017588 177017588 C T HOXD4 Missense_Mutation p.S229L 0.52 deleterious(0.05) possibly_damaging(0.546) TCGA-EE-A29R-06 2 178096298 178096298 C T NFE2L2 Missense_Mutation p.G345S 0.26 deleterious(0) probably_damaging(0.991) TCGA-EE-A29R-06 2 179495596 179495596 C T TTN Missense_Mutation p.E14697K 0.34 TCGA-EE-A29R-06 2 179590660 179590660 C T TTN Missense_Mutation p.D6797N 0.38 TCGA-EE-A29R-06 2 179594885 179594885 G A TTN Missense_Mutation p.T6081I 0.54 TCGA-EE-A29R-06 2 179595373 179595373 C T TTN Missense_Mutation p.E5963K 0.47 TCGA-EE-A29R-06 2 179595650 179595650 A G TTN Splice_Site p.X5914_splice 0.33 TCGA-EE-A29R-06 2 179610423 179610423 G A TTN Intron 0.38 TCGA-EE-A29R-06 2 182402939 182402939 C T CERKL Missense_Mutation p.G550E 0.31 tolerated(0.32) benign(0.005) TCGA-EE-A29R-06 2 182468742 182468742 C T CERKL Silent p.V101V 0.57 TCGA-EE-A29R-06 2 186692894 186692894 G A FSIP2 Missense_Mutation p.E6918K 0.47 benign(0.051) TCGA-EE-A29R-06 2 187531874 187531874 C T ITGAV Intron 0.55 TCGA-EE-A29R-06 2 18757519 18757519 A T NT5C1B Missense_Mutation p.F480L 0.56 deleterious(0.03) benign(0.026) TCGA-EE-A29R-06 2 189872240 189872240 A C COL3A1 Silent p.P1090P 0.17 TCGA-EE-A29R-06 2 190430207 190430207 C T SLC40A1 Nonsense_Mutation p.W211* 0.60 TCGA-EE-A29R-06 2 1926269 1926269 G A MYT1L Silent p.F424F 0.63 TCGA-EE-A29R-06 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.42 TCGA-EE-A29R-06 2 198968577 198968577 A G PLCL1 Missense_Mutation p.N1008D 0.28 tolerated(0.5) benign(0.003) TCGA-EE-A29R-06 2 202545672 202545672 C T MPP4 Missense_Mutation p.G273E 0.65 deleterious(0) probably_damaging(0.994) TCGA-EE-A29R-06 2 207175072 207175072 G A ZDBF2 Silent p.A1940A 0.54 TCGA-EE-A29R-06 2 207516587 207516587 G A DYTN Silent p.A564A 0.35 TCGA-EE-A29R-06 2 207516588 207516588 G A DYTN Missense_Mutation p.A564V 0.35 deleterious(0) probably_damaging(0.922) TCGA-EE-A29R-06 2 207527785 207527785 G A DYTN Missense_Mutation p.P492L 0.44 tolerated(0.25) benign(0.025) TCGA-EE-A29R-06 2 207619954 207619954 C T MDH1B Missense_Mutation p.R230Q 0.54 deleterious(0.01) benign(0.372) TCGA-EE-A29R-06 2 211459282 211459282 C T CPS1 Silent p.T411T 0.40 TCGA-EE-A29R-06 2 21228678 21228678 G A APOB Silent p.L3688L 0.34 TCGA-EE-A29R-06 2 21230105 21230105 C T APOB Missense_Mutation p.R3212K 0.34 benign(0.027) TCGA-EE-A29R-06 2 212537960 212537960 C T ERBB4 Missense_Mutation p.G549S 0.35 tolerated(0.08) benign(0.016) TCGA-EE-A29R-06 2 216184408 216184408 C T ATIC Missense_Mutation p.P82S 0.24 tolerated(0.09) benign(0.006) TCGA-EE-A29R-06 2 216271100 216271100 C T FN1 Silent p.E949E 0.59 TCGA-EE-A29R-06 2 220502521 220502521 C T SLC4A3 Silent p.F945F 0.57 TCGA-EE-A29R-06 2 220502522 220502522 C T SLC4A3 Silent p.L946L 0.56 TCGA-EE-A29R-06 2 232578026 232578026 C T PTMA 3'UTR 0.36 TCGA-EE-A29R-06 2 233546325 233546325 G A EFHD1 Missense_Mutation p.E206K 0.36 deleterious(0) probably_damaging(0.993) TCGA-EE-A29R-06 2 234669287 234669287 G A UGT1A8 Intron 0.36 TCGA-EE-A29R-06 2 239040160 239040160 G A ESPNL Nonsense_Mutation p.W935* 0.38 TCGA-EE-A29R-06 2 242021733 242021733 G A SNED1 Missense_Mutation p.E1359K 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 2 26502047 26502047 C T HADHB Silent p.H225H 0.28 TCGA-EE-A29R-06 2 26690042 26690042 G A OTOF Silent p.F1429F 0.55 TCGA-EE-A29R-06 2 272154 272154 C T ACP1 Intron 0.34 TCGA-EE-A29R-06 2 30955419 30955419 C T CAPN13 Silent p.G604G 0.41 TCGA-EE-A29R-06 2 33500129 33500129 G A LTBP1 Missense_Mutation p.M947I 0.59 tolerated(0.08) benign(0.02) TCGA-EE-A29R-06 2 37028483 37028483 G A VIT Silent p.T366T 0.56 TCGA-EE-A29R-06 2 48809549 48809549 C T STON1-GTF2A1L Silent p.L593L 0.32 TCGA-EE-A29R-06 2 68615584 68615584 C T PLEK Silent p.F241F 0.27 TCGA-EE-A29R-06 2 69093563 69093563 C T BMP10 Missense_Mutation p.D159N 0.41 tolerated(0.5) benign(0.009) TCGA-EE-A29R-06 2 73053091 73053091 T A EXOC6B 5'UTR 0.40 TCGA-EE-A29R-06 2 73899550 73899550 G A ALMS1P RNA 0.29 TCGA-EE-A29R-06 2 74477560 74477560 G A SLC4A5 Silent p.S521S 0.57 TCGA-EE-A29R-06 2 84518434 84518434 C T FUNDC2P2 RNA 0.68 TCGA-EE-A29R-06 2 96458262 96458262 C T AC008268.2 RNA 0.36 TCGA-EE-A29R-06 2 97271121 97271121 G A KANSL3 Silent p.S623S 0.58 TCGA-EE-A29R-06 2 97462804 97462804 C T CNNM4 Silent p.P486P 0.57 TCGA-EE-A29R-06 2 97862340 97862340 G A ANKRD36 Silent p.Q854Q 0.21 TCGA-EE-A29R-06 2 99291553 99291553 C T MGAT4A Silent p.L116L 0.49 TCGA-EE-A29R-06 2 99448865 99448865 C T KIAA1211L Silent p.R162R 0.59 TCGA-EE-A29R-06 3 100148714 100148714 C T LNP1 Silent p.T47T 0.28 TCGA-EE-A29R-06 3 10452473 10452473 C T ATP2B2 Missense_Mutation p.E76K 0.47 tolerated(0.06) benign(0.209) TCGA-EE-A29R-06 3 107096720 107096720 G A CCDC54 Missense_Mutation p.E96K 0.62 tolerated(0.18) benign(0.028) TCGA-EE-A29R-06 3 107524289 107524289 C T BBX Silent p.S937S 0.33 TCGA-EE-A29R-06 3 111263903 111263903 A T CD96 Missense_Mutation p.E24D 0.27 deleterious(0.03) benign(0.317) TCGA-EE-A29R-06 3 111958734 111958734 C T SLC9C1 Missense_Mutation p.D467N 0.33 tolerated(0.43) probably_damaging(0.972) TCGA-EE-A29R-06 3 114014474 114014474 C T TIGIT Silent p.S48S 0.38 TCGA-EE-A29R-06 3 115439754 115439754 C T GAP43 3'UTR 0.38 TCGA-EE-A29R-06 3 119459488 119459488 C T MAATS1 Silent p.A542A 0.43 TCGA-EE-A29R-06 3 120673881 120673881 G A STXBP5L Missense_Mutation p.R95Q 0.56 deleterious(0.01) benign(0.009) TCGA-EE-A29R-06 3 122399901 122399901 C T PARP14 Silent p.F57F 0.32 TCGA-EE-A29R-06 3 122630878 122630878 C T SEMA5B Missense_Mutation p.D1033N 0.32 tolerated(0.32) benign(0.12) TCGA-EE-A29R-06 3 125727714 125727714 G A SLC41A3 Missense_Mutation p.S372F 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A29R-06 3 126741134 126741134 C T PLXNA1 Silent p.L1415L 0.50 TCGA-EE-A29R-06 3 127335762 127335762 C T MCM2 Missense_Mutation p.P525L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 3 134226076 134226076 G C CEP63 Missense_Mutation p.R57P 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 3 13670698 13670698 C T FBLN2 Silent p.C916C 0.29 TCGA-EE-A29R-06 3 137843430 137843430 C T A4GNT Silent p.R233R 0.34 TCGA-EE-A29R-06 3 142741865 142741865 C T U2SURP Missense_Mutation p.P397S 0.40 tolerated(0.05) benign(0.165) TCGA-EE-A29R-06 3 151545640 151545640 G A AADAC Missense_Mutation p.G294R 0.45 tolerated(0.06) benign(0.159) TCGA-EE-A29R-06 3 155199026 155199026 G A PLCH1 Missense_Mutation p.P1605S 0.54 tolerated_low_confidence(0.94) benign(0) TCGA-EE-A29R-06 3 155314037 155314037 C T PLCH1 Silent p.K58K 0.54 TCGA-EE-A29R-06 3 164737452 164737452 C T SI Missense_Mutation p.A1121T 0.57 tolerated(0.91) benign(0.02) TCGA-EE-A29R-06 3 164767590 164767590 G A SI Missense_Mutation p.P529L 0.51 deleterious(0.01) possibly_damaging(0.683) TCGA-EE-A29R-06 3 164786616 164786616 A G SI Missense_Mutation p.V126A 0.37 tolerated(0.09) benign(0.01) TCGA-EE-A29R-06 3 167185017 167185017 C T SERPINI2 Missense_Mutation p.E102K 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A29R-06 3 167245788 167245788 G A WDR49 Silent p.S456S 0.28 TCGA-EE-A29R-06 3 17051295 17051295 C T PLCL2 Missense_Mutation p.R27C 0.66 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 3 179292229 179292229 C T ACTL6A Silent p.F150F 0.54 TCGA-EE-A29R-06 3 183756191 183756191 C T HTR3D Missense_Mutation p.P305L 0.49 tolerated(0.31) benign(0.097) TCGA-EE-A29R-06 3 183777764 183777764 G T HTR3C Silent p.G358G 0.40 TCGA-EE-A29R-06 3 184021162 184021162 C T PSMD2 Missense_Mutation p.S375F 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29R-06 3 189611995 189611995 G A TP63 Missense_Mutation p.D583N 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A29R-06 3 191888302 191888302 C T FGF12 Silent p.G186G 0.59 TCGA-EE-A29R-06 3 193120603 193120603 G A ATP13A4 Silent p.F1143F 0.23 TCGA-EE-A29R-06 3 193180586 193180586 C T ATP13A4 Silent p.L496L 0.27 TCGA-EE-A29R-06 3 194118701 194118701 C T GP5 Missense_Mutation p.R104K 0.29 tolerated(0.46) benign(0.035) TCGA-EE-A29R-06 3 2787242 2787242 G A CNTN4 Missense_Mutation p.M73I 0.54 tolerated(0.41) benign(0.065) TCGA-EE-A29R-06 3 33055774 33055774 G A GLB1 Missense_Mutation p.S503F 0.19 tolerated(0.06) benign(0.012) TCGA-EE-A29R-06 3 36896895 36896895 G A TRANK1 Nonsense_Mutation p.Q1396* 0.30 TCGA-EE-A29R-06 3 3886706 3886706 G A LRRN1 Silent p.E127E 0.33 TCGA-EE-A29R-06 3 38938438 38938438 C T SCN11A Silent p.G767G 0.61 TCGA-EE-A29R-06 3 42299711 42299711 C T CCK Missense_Mutation p.R76Q 0.51 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A29R-06 3 43381975 43381975 C T SNRK Nonsense_Mutation p.R310* 0.34 TCGA-EE-A29R-06 3 44763572 44763572 C T ZNF502 Silent p.C421C 0.47 TCGA-EE-A29R-06 3 44986667 44986667 G A ZDHHC3 Missense_Mutation p.H142Y 0.58 deleterious(0) possibly_damaging(0.811) TCGA-EE-A29R-06 3 45943258 45943258 G A CCR9 Silent p.R326R 0.40 TCGA-EE-A29R-06 3 46307396 46307396 C T CCR3 Silent p.F270F 0.61 TCGA-EE-A29R-06 3 46901047 46901047 G A MYL3 Silent p.F133F 0.38 TCGA-EE-A29R-06 3 48699262 48699262 G A CELSR3 Missense_Mutation p.P269L 0.37 deleterious_low_confidence(0) benign(0.194) TCGA-EE-A29R-06 3 48719488 48719488 G A NCKIPSD Silent p.A196A 0.62 TCGA-EE-A29R-06 3 49750127 49750127 G A RNF123 Intron 0.25 TCGA-EE-A29R-06 3 51456309 51456309 G A VPRBP Silent p.F657F 0.32 TCGA-EE-A29R-06 3 52256482 52256482 C T TLR9 Missense_Mutation p.G771E 0.32 deleterious(0.01) possibly_damaging(0.767) TCGA-EE-A29R-06 3 54952603 54952603 G A LRTM1 Silent p.A307A 0.62 TCGA-EE-A29R-06 3 57294155 57294155 C T APPL1 Missense_Mutation p.P557S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 3 57302486 57302486 G A APPL1 Missense_Mutation p.E652K 0.46 tolerated(0.11) benign(0.005) TCGA-EE-A29R-06 3 58417666 58417666 C A PDHB Nonsense_Mutation p.E48* 0.50 TCGA-EE-A29R-06 3 63594956 63594956 C T SYNPR Silent p.I188I 0.40 TCGA-EE-A29R-06 3 77089831 77089831 G A ROBO2 Intron 0.50 TCGA-EE-A29R-06 3 78656104 78656104 A T ROBO1 Missense_Mutation p.V1508E 0.54 tolerated(0.96) benign(0.022) TCGA-EE-A29R-06 3 88040668 88040668 G A HTR1F Missense_Mutation p.D257N 0.58 tolerated(0.3) benign(0.033) TCGA-EE-A29R-06 3 97731241 97731241 C T GABRR3 RNA 0.53 TCGA-EE-A29R-06 3 97806258 97806258 C T OR5AC2 Missense_Mutation p.P81L 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A29R-06 3 98001844 98001844 T G OR5H2 Missense_Mutation p.V38G 0.54 tolerated(0.07) benign(0.013) TCGA-EE-A29R-06 4 100232738 100232738 G A ADH1B Missense_Mutation p.L302F 0.46 tolerated(0.09) probably_damaging(0.918) TCGA-EE-A29R-06 4 109861769 109861769 G A COL25A1 Missense_Mutation p.P200S 0.31 deleterious(0.01) unknown(0) TCGA-EE-A29R-06 4 114294455 114294455 C T ANK2 Silent p.I3903I 0.38 TCGA-EE-A29R-06 4 1165156 1165156 C T SPON2 Silent p.A113A 0.62 TCGA-EE-A29R-06 4 122728701 122728701 C T EXOSC9 Missense_Mutation p.P177S 0.49 tolerated(0.13) benign(0.004) TCGA-EE-A29R-06 4 123130398 123130398 C T KIAA1109 Missense_Mutation p.P613S 0.58 benign(0.011) TCGA-EE-A29R-06 4 123274079 123274079 C T KIAA1109 Nonsense_Mutation p.R4624* 0.50 TCGA-EE-A29R-06 4 1244947 1244947 G A CTBP1 5'Flank 0.33 TCGA-EE-A29R-06 4 126372684 126372684 G A FAT4 Missense_Mutation p.D3505N 0.38 probably_damaging(0.999) TCGA-EE-A29R-06 4 138452553 138452553 G A PCDH18 Silent p.S230S 0.33 TCGA-EE-A29R-06 4 144135968 144135968 A T USP38 Nonsense_Mutation p.K947* 0.50 TCGA-EE-A29R-06 4 155156362 155156362 C T DCHS2 Missense_Mutation p.E2693K 0.35 deleterious(0.01) possibly_damaging(0.884) TCGA-EE-A29R-06 4 156135422 156135422 A T NPY2R Missense_Mutation p.T111S 0.43 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29R-06 4 159091363 159091363 G A FAM198B Intron 0.50 TCGA-EE-A29R-06 4 16510246 16510246 G A LDB2 Missense_Mutation p.S268F 0.51 deleterious(0.02) benign(0.19) TCGA-EE-A29R-06 4 165878301 165878301 C T FAM218A Missense_Mutation p.P43S 0.33 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A29R-06 4 166910622 166910622 G A TLL1 Missense_Mutation p.G87R 0.43 tolerated(0.33) benign(0.002) TCGA-EE-A29R-06 4 166935709 166935709 C T TLL1 Missense_Mutation p.P347S 0.48 tolerated(0.07) benign(0.011) TCGA-EE-A29R-06 4 174450277 174450277 G A HAND2 Missense_Mutation p.P55L 0.35 tolerated(0.05) benign(0.006) TCGA-EE-A29R-06 4 187516857 187516857 G A FAT1 Missense_Mutation p.S4375L 0.45 benign(0.386) TCGA-EE-A29R-06 4 188924849 188924849 C T ZFP42 Silent p.I296I 0.28 TCGA-EE-A29R-06 4 189068272 189068272 G A TRIML1 Missense_Mutation p.D385N 0.56 tolerated(0.83) probably_damaging(0.917) TCGA-EE-A29R-06 4 3475241 3475241 C T DOK7 Missense_Mutation p.P70L 0.46 tolerated(0.73) benign(0.27) TCGA-EE-A29R-06 4 3475242 3475242 C T DOK7 Silent p.P70P 0.43 TCGA-EE-A29R-06 4 4248017 4248017 G A TMEM128 Missense_Mutation p.H27Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A29R-06 4 47405415 47405415 C T GABRB1 Missense_Mutation p.P209S 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A29R-06 4 48486095 48486095 C T SLC10A4 Silent p.L173L 0.55 TCGA-EE-A29R-06 4 52861301 52861301 G A LRRC66 Silent p.S629S 0.33 TCGA-EE-A29R-06 4 55573425 55573425 C T KIT Missense_Mutation p.P363S 0.44 tolerated(0.23) benign(0.019) TCGA-EE-A29R-06 4 69528759 69528759 C T UGT2B15 Missense_Mutation p.M324I 0.37 tolerated(0.21) benign(0.004) TCGA-EE-A29R-06 4 69962639 69962639 A G UGT2B7 Missense_Mutation p.K134R 0.47 tolerated(0.06) benign(0.043) TCGA-EE-A29R-06 4 69962649 69962649 G C UGT2B7 Missense_Mutation p.M137I 0.47 tolerated(0.13) benign(0.018) TCGA-EE-A29R-06 4 69962926 69962926 A G UGT2B7 Missense_Mutation p.K230E 0.25 tolerated(0.08) benign(0.17) TCGA-EE-A29R-06 4 70080520 70080520 A T UGT2B11 5'Flank 0.46 TCGA-EE-A29R-06 4 7016246 7016246 G A TBC1D14 Silent p.K573K 0.17 TCGA-EE-A29R-06 4 70898967 70898967 G A HTN3 3'UTR 0.59 TCGA-EE-A29R-06 4 79308781 79308781 G A FRAS1 Missense_Mutation p.D1301N 0.37 possibly_damaging(0.707) TCGA-EE-A29R-06 4 81791270 81791270 C T C4orf22 Missense_Mutation p.P170S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 4 84347203 84347203 G A HELQ Missense_Mutation p.L907F 0.39 deleterious(0) benign(0.059) TCGA-EE-A29R-06 4 8469690 8469690 C T TRMT44 Missense_Mutation p.S515F 0.42 tolerated(0.59) benign(0.197) TCGA-EE-A29R-06 4 8584276 8584276 C T GPR78 Silent p.L229L 0.48 TCGA-EE-A29R-06 4 87744896 87744896 G A SLC10A6 Missense_Mutation p.P360L 0.28 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A29R-06 4 9922071 9922071 G A SLC2A9 Missense_Mutation p.R314C 0.47 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A29R-06 5 100147688 100147688 G A ST8SIA4 Missense_Mutation p.H315Y 0.34 probably_damaging(0.996) TCGA-EE-A29R-06 5 100238705 100238705 C T ST8SIA4 5'UTR 0.40 TCGA-EE-A29R-06 5 102444279 102444279 A C GIN1 Missense_Mutation p.F45V 0.57 tolerated(0.13) benign(0.007) TCGA-EE-A29R-06 5 122359598 122359598 G T PPIC Missense_Mutation p.P204H 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29R-06 5 128864276 128864276 G A ADAMTS19 Missense_Mutation p.E406K 0.49 tolerated(0.12) possibly_damaging(0.685) TCGA-EE-A29R-06 5 133481865 133481865 G A TCF7 Intron 0.46 TCGA-EE-A29R-06 5 13700953 13700953 C T DNAH5 Missense_Mutation p.A4507T 0.43 possibly_damaging(0.787) TCGA-EE-A29R-06 5 139740342 139740342 T C SLC4A9 Missense_Mutation p.L83P 0.37 tolerated_low_confidence(0.09) benign(0.006) TCGA-EE-A29R-06 5 140263725 140263725 G A PCDHA13 Silent p.V624V 0.40 TCGA-EE-A29R-06 5 140553816 140553816 C T PCDHB7 Missense_Mutation p.A467V 0.40 deleterious_low_confidence(0.01) benign(0.158) TCGA-EE-A29R-06 5 140736306 140736306 C T PCDHGA4 Silent p.I513I 0.40 TCGA-EE-A29R-06 5 145979965 145979965 C T PPP2R2B Silent p.S286S 0.49 TCGA-EE-A29R-06 5 154311726 154311726 G A GEMIN5 Silent p.I198I 0.47 TCGA-EE-A29R-06 5 156741394 156741394 G A CYFIP2 Missense_Mutation p.E359K 0.45 tolerated(0.07) possibly_damaging(0.597) TCGA-EE-A29R-06 5 156817538 156817538 C T CYFIP2 Silent p.F1126F 0.40 TCGA-EE-A29R-06 5 159682637 159682637 G A CCNJL Missense_Mutation p.S269F 0.37 deleterious(0.02) possibly_damaging(0.71) TCGA-EE-A29R-06 5 167631594 167631594 C T TENM2 Silent p.P1264P 0.36 TCGA-EE-A29R-06 5 176084570 176084570 C T TSPAN17 Silent p.S290S 0.58 TCGA-EE-A29R-06 5 178585775 178585775 C T ADAMTS2 Missense_Mutation p.D361N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 5 180374682 180374682 G A BTNL8 Intron 0.40 TCGA-EE-A29R-06 5 31317956 31317956 G A CDH6 Missense_Mutation p.E603K 0.55 tolerated(0.06) probably_damaging(0.971) TCGA-EE-A29R-06 5 32058175 32058175 G A PDZD2 Silent p.K722K 0.39 TCGA-EE-A29R-06 5 35014173 35014173 G A AGXT2 Missense_Mutation p.H339Y 0.47 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A29R-06 5 41000800 41000800 G A MROH2B Missense_Mutation p.P1444S 0.33 deleterious(0) possibly_damaging(0.511) TCGA-EE-A29R-06 5 44305163 44305163 C T FGF10 Silent p.R187R 0.42 TCGA-EE-A29R-06 5 54326282 54326282 C T GZMK Missense_Mutation p.P78L 0.40 tolerated(0.68) benign(0.009) TCGA-EE-A29R-06 5 55407127 55407127 C T ANKRD55 Missense_Mutation p.R483K 0.41 tolerated_low_confidence(0.05) benign(0.025) TCGA-EE-A29R-06 5 63257242 63257242 C T HTR1A Nonsense_Mutation p.W102* 0.37 TCGA-EE-A29R-06 5 71494436 71494436 G A MAP1B Missense_Mutation p.D1752N 0.49 possibly_damaging(0.736) TCGA-EE-A29R-06 5 71756887 71756887 C T ZNF366 Missense_Mutation p.G146E 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.621) TCGA-EE-A29R-06 5 7707816 7707816 C T ADCY2 Intron 0.39 TCGA-EE-A29R-06 5 7707833 7707833 C T ADCY2 Missense_Mutation p.S428F 0.51 deleterious(0) probably_damaging(0.941) TCGA-EE-A29R-06 5 79031447 79031447 G A CMYA5 Missense_Mutation p.E2287K 0.30 benign(0.048) TCGA-EE-A29R-06 5 80639989 80639989 G A ACOT12 Missense_Mutation p.R324C 0.46 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A29R-06 5 88018473 88018473 C T MEF2C Missense_Mutation p.R467K 0.40 tolerated(0.35) possibly_damaging(0.452) TCGA-EE-A29R-06 5 89695273 89695273 C T CETN3 Missense_Mutation p.R121K 0.59 tolerated(1) benign(0.023) TCGA-EE-A29R-06 5 90002069 90002069 C T GPR98 Missense_Mutation p.T2863I 0.62 benign(0.105) TCGA-EE-A29R-06 5 9044649 9044649 G A SEMA5A Missense_Mutation p.L981F 0.38 tolerated(0.19) possibly_damaging(0.876) TCGA-EE-A29R-06 6 10586508 10586508 C T GCNT2 Intron 0.25 TCGA-EE-A29R-06 6 10875115 10875115 C T GCM2 Missense_Mutation p.E212K 0.38 tolerated(0.07) possibly_damaging(0.629) TCGA-EE-A29R-06 6 116442622 116442622 C T COL10A1 Silent p.V219V 0.91 TCGA-EE-A29R-06 6 12121632 12121632 C T HIVEP1 Missense_Mutation p.P535L 0.25 tolerated(0.11) benign(0.109) TCGA-EE-A29R-06 6 121602820 121602820 G A TBC1D32 Missense_Mutation p.P493L 0.92 deleterious(0) probably_damaging(0.993) TCGA-EE-A29R-06 6 126296113 126296113 T C HINT3 Silent p.F170F 0.84 TCGA-EE-A29R-06 6 12934076 12934076 G A PHACTR1 Silent p.K154K 0.23 TCGA-EE-A29R-06 6 129704369 129704369 G A LAMA2 Missense_Mutation p.D1688N 0.87 tolerated(0.7) benign(0.016) TCGA-EE-A29R-06 6 132207717 132207717 C T ENPP1 Silent p.I820I 0.91 TCGA-EE-A29R-06 6 132860462 132860462 T G TAAR9 Missense_Mutation p.V345G 0.91 deleterious_low_confidence(0) benign(0) TCGA-EE-A29R-06 6 160963826 160963826 C T LPA Missense_Mutation p.D1805N 0.90 tolerated(0.13) benign(0.103) TCGA-EE-A29R-06 6 160999732 160999732 G A LPA Silent p.L1432L 0.83 TCGA-EE-A29R-06 6 24873931 24873931 G A FAM65B Silent p.P66P 0.32 TCGA-EE-A29R-06 6 25770660 25770660 C T SLC17A4 Missense_Mutation p.P194S 0.12 deleterious(0.02) possibly_damaging(0.819) TCGA-EE-A29R-06 6 25916990 25916990 G A SLC17A2 Missense_Mutation p.H285Y 0.36 tolerated(0.29) possibly_damaging(0.493) TCGA-EE-A29R-06 6 26046004 26046004 C T HIST1H3C Silent p.P122P 0.23 TCGA-EE-A29R-06 6 26234618 26234618 G A HIST1H1D Nonsense_Mutation p.Q182* 0.13 TCGA-EE-A29R-06 6 26252139 26252139 T C HIST1H2BH Silent p.R87R 0.30 TCGA-EE-A29R-06 6 27368846 27368846 C T ZNF391 Missense_Mutation p.R233C 0.56 tolerated(0.13) benign(0.304) TCGA-EE-A29R-06 6 28297363 28297363 G A ZSCAN31 Missense_Mutation p.S33F 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A29R-06 6 28540744 28540744 A G SCAND3 Silent p.A974A 0.21 TCGA-EE-A29R-06 6 28541467 28541467 G A SCAND3 Silent p.F733F 0.54 TCGA-EE-A29R-06 6 29080495 29080495 C T OR2J3 Silent p.F276F 0.33 TCGA-EE-A29R-06 6 29141754 29141754 C T OR2J2 Silent p.V114V 0.68 TCGA-EE-A29R-06 6 29641238 29641238 G A ZFP57 Missense_Mutation p.S217F 0.28 deleterious(0.04) possibly_damaging(0.627) TCGA-EE-A29R-06 6 30136170 30136170 C T TRIM15 Silent p.L191L 0.60 TCGA-EE-A29R-06 6 30166919 30166919 G A TRIM26 5'UTR 0.28 TCGA-EE-A29R-06 6 31686823 31686823 G T LY6G6C 3'UTR 0.34 TCGA-EE-A29R-06 6 31744340 31744340 G A VWA7 Missense_Mutation p.R73C 0.28 deleterious(0.03) benign(0.023) TCGA-EE-A29R-06 6 31855414 31855414 G A EHMT2 Missense_Mutation p.P651S 0.16 tolerated(0.1) benign(0.026) TCGA-EE-A29R-06 6 32026070 32026070 C T TNXB Silent p.V2530V 0.28 TCGA-EE-A29R-06 6 32086587 32086587 G A ATF6B Silent p.F403F 0.13 TCGA-EE-A29R-06 6 32163329 32163329 G A NOTCH4 Missense_Mutation p.P1966L 0.29 deleterious_low_confidence(0.01) benign(0.152) TCGA-EE-A29R-06 6 32410366 32410366 G A HLA-DRA Missense_Mutation p.R75Q 0.27 tolerated(0.79) benign(0.001) TCGA-EE-A29R-06 6 32726770 32726770 C T HLA-DQB2 Missense_Mutation p.G168D 0.17 deleterious(0) probably_damaging(0.985) TCGA-EE-A29R-06 6 33374158 33374158 C T KIFC1 Silent p.P574P 0.68 TCGA-EE-A29R-06 6 33409463 33409463 C T SYNGAP1 Missense_Mutation p.P741S 0.07 tolerated(0.57) benign(0.396) TCGA-EE-A29R-06 6 33409464 33409464 C T SYNGAP1 Missense_Mutation p.P741L 0.06 tolerated(0.83) benign(0.007) TCGA-EE-A29R-06 6 35773711 35773711 C T LHFPL5 Silent p.S88S 0.23 TCGA-EE-A29R-06 6 36466174 36466174 G A STK38 Missense_Mutation p.P348S 0.37 tolerated(0.6) probably_damaging(0.976) TCGA-EE-A29R-06 6 36714220 36714220 C T CPNE5 Missense_Mutation p.G385R 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 6 38881674 38881674 G A DNAH8 Silent p.Q3086Q 0.16 TCGA-EE-A29R-06 6 38899616 38899616 C T DNAH8 Silent p.I3551I 0.17 TCGA-EE-A29R-06 6 43109802 43109802 C T PTK7 Silent p.P642P 0.31 TCGA-EE-A29R-06 6 44329570 44329570 G A SPATS1 Missense_Mutation p.D139N 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29R-06 6 46991809 46991809 C T GPR110 Missense_Mutation p.S141N 0.53 tolerated(0.13) benign(0.011) TCGA-EE-A29R-06 6 47685067 47685067 G A GPR115 Missense_Mutation p.G672R 0.28 tolerated(0.92) probably_damaging(0.961) TCGA-EE-A29R-06 6 70411843 70411843 G A LMBRD1 Silent p.I306I 0.78 TCGA-EE-A29R-06 6 70778320 70778320 C T COL19A1 Silent p.S392S 0.91 TCGA-EE-A29R-06 7 100028647 100028647 C T MEPCE Silent p.L336L 0.76 TCGA-EE-A29R-06 7 100348402 100348402 C T ZAN Silent p.L468L 0.77 TCGA-EE-A29R-06 7 101892184 101892184 C T CUX1 Silent p.F1471F 0.64 TCGA-EE-A29R-06 7 102517984 102517984 C T FBXL13 Missense_Mutation p.G522E 0.79 deleterious(0) possibly_damaging(0.752) TCGA-EE-A29R-06 7 111846817 111846817 G A ZNF277 Missense_Mutation p.D16N 0.61 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A29R-06 7 112129956 112129956 C T LSMEM1 Silent p.I116I 0.64 TCGA-EE-A29R-06 7 115581954 115581954 C T TFEC Missense_Mutation p.R219Q 0.69 deleterious(0) probably_damaging(0.922) TCGA-EE-A29R-06 7 129658543 129658543 G A ZC3HC1 Silent p.F490F 0.14 TCGA-EE-A29R-06 7 138529138 138529138 G A KIAA1549 Silent p.A1792A 0.68 TCGA-EE-A29R-06 7 142099485 142099485 G A TRBV7-8 Missense_Mutation p.S106F 0.22 deleterious(0) probably_damaging(0.946) TCGA-EE-A29R-06 7 143806795 143806795 G A OR2A2 Silent p.G40G 0.16 TCGA-EE-A29R-06 7 143882730 143882730 G A CTAGE4 Missense_Mutation p.G712S 0.21 tolerated(0.3) benign(0.247) TCGA-EE-A29R-06 7 150417743 150417743 C T GIMAP1 Silent p.G217G 0.85 TCGA-EE-A29R-06 7 151711862 151711862 G A GALNTL5 Nonsense_Mutation p.W387* 0.72 TCGA-EE-A29R-06 7 1525051 1525051 G A INTS1 Missense_Mutation p.P1011S 0.76 tolerated(0.73) benign(0.002) TCGA-EE-A29R-06 7 157931196 157931196 G A PTPRN2 Missense_Mutation p.H308Y 0.21 deleterious(0.01) benign(0.064) TCGA-EE-A29R-06 7 36656027 36656027 G A AOAH Missense_Mutation p.H269Y 0.71 deleterious(0) probably_damaging(0.962) TCGA-EE-A29R-06 7 38356705 38356705 C T TRGV9 Silent p.R93R 0.81 TCGA-EE-A29R-06 7 39503881 39503881 C T POU6F2 Missense_Mutation p.P558S 0.14 tolerated_low_confidence(0.07) unknown(0) TCGA-EE-A29R-06 7 4119180 4119180 G A SDK1 Silent p.G1096G 0.19 TCGA-EE-A29R-06 7 4308460 4308460 C T SDK1 3'UTR 0.13 TCGA-EE-A29R-06 7 44096470 44096470 C T DBNL Missense_Mutation p.R148C 0.13 tolerated(0.07) benign(0.031) TCGA-EE-A29R-06 7 47874588 47874588 C T PKD1L1 Missense_Mutation p.G2035E 0.17 tolerated(0.65) benign(0.001) TCGA-EE-A29R-06 7 47879173 47879173 C T PKD1L1 Silent p.V1880V 0.67 TCGA-EE-A29R-06 7 53103889 53103889 G A POM121L12 Silent p.R175R 0.12 TCGA-EE-A29R-06 7 55238344 55238344 C T EGFR Intron 0.18 TCGA-EE-A29R-06 7 5922207 5922207 C T OCM Missense_Mutation p.R49W 0.14 deleterious(0.04) possibly_damaging(0.773) TCGA-EE-A29R-06 7 65444470 65444470 G A GUSB Silent p.L214L 0.10 TCGA-EE-A29R-06 7 70800608 70800608 C T WBSCR17 Missense_Mutation p.S104F 0.79 deleterious(0) benign(0.235) TCGA-EE-A29R-06 7 7278170 7278170 G T C1GALT1 Missense_Mutation p.D169Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 7 7278172 7278172 T A C1GALT1 Missense_Mutation p.D169E 0.12 deleterious(0) probably_damaging(0.992) TCGA-EE-A29R-06 7 73279479 73279479 C T WBSCR28 Missense_Mutation p.L77F 0.64 deleterious(0.01) benign(0) TCGA-EE-A29R-06 7 82582494 82582494 G A PCLO Missense_Mutation p.P2592L 0.74 unknown(0) TCGA-EE-A29R-06 7 82784267 82784267 C T PCLO Missense_Mutation p.G564R 0.13 unknown(0) TCGA-EE-A29R-06 7 87792381 87792381 G A ADAM22 Silent p.G654G 0.11 TCGA-EE-A29R-06 7 91643619 91643619 G A AKAP9 Missense_Mutation p.E1197K 0.59 probably_damaging(0.999) TCGA-EE-A29R-06 7 96649963 96649963 C T DLX5 3'UTR 0.27 TCGA-EE-A29R-06 7 96650104 96650104 G A DLX5 Missense_Mutation p.P272S 0.67 tolerated(0.15) benign(0.007) TCGA-EE-A29R-06 7 98256641 98256641 C T NPTX2 Silent p.I351I 0.11 TCGA-EE-A29R-06 7 99654908 99654908 C T ZSCAN21 Silent p.F93F 0.79 TCGA-EE-A29R-06 8 100821706 100821706 G A VPS13B Missense_Mutation p.R2707Q 0.27 tolerated(0.4) possibly_damaging(0.553) TCGA-EE-A29R-06 8 100874047 100874047 G T VPS13B Silent p.R3721R 0.33 TCGA-EE-A29R-06 8 105361686 105361686 C T DCSTAMP Silent p.I302I 0.33 TCGA-EE-A29R-06 8 107691493 107691493 G A OXR1 Silent p.Q93Q 0.26 TCGA-EE-A29R-06 8 110503324 110503324 G A PKHD1L1 Missense_Mutation p.G3370R 0.24 deleterious(0) probably_damaging(0.934) TCGA-EE-A29R-06 8 114111049 114111049 C T CSMD3 Missense_Mutation p.D285N 0.19 tolerated(0.44) possibly_damaging(0.677) TCGA-EE-A29R-06 8 125716406 125716406 G A MTSS1 Silent p.F33F 0.31 TCGA-EE-A29R-06 8 126075832 126075832 G A KIAA0196 Missense_Mutation p.S447L 0.62 tolerated(0.68) benign(0.117) TCGA-EE-A29R-06 8 12957304 12957304 G A DLC1 Missense_Mutation p.H848Y 0.28 tolerated(0.2) possibly_damaging(0.869) TCGA-EE-A29R-06 8 13072133 13072133 G A DLC1 Intron 0.32 TCGA-EE-A29R-06 8 133899120 133899120 C T TG Silent p.F501F 0.29 TCGA-EE-A29R-06 8 139793219 139793219 G A COL22A1 Missense_Mutation p.S534F 0.26 unknown(0) TCGA-EE-A29R-06 8 141460946 141460946 G A TRAPPC9 Missense_Mutation p.P274L 0.19 deleterious(0) possibly_damaging(0.488) TCGA-EE-A29R-06 8 14181703 14181703 C T SGCZ Missense_Mutation p.G82E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 8 143961048 143961048 T C CYP11B1 Missense_Mutation p.Y61C 0.29 tolerated(0.16) benign(0.02) TCGA-EE-A29R-06 8 14412282 14412282 C G SGCZ Missense_Mutation p.A65P 0.51 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29R-06 8 144940570 144940570 C T EPPK1 Silent p.E2284E 0.06 TCGA-EE-A29R-06 8 145095585 145095585 C T SPATC1 Missense_Mutation p.P295S 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.651) TCGA-EE-A29R-06 8 145618702 145618702 C T CPSF1 Missense_Mutation p.E1417K 0.19 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A29R-06 8 145698163 145698163 C T KIFC2 Intron 0.33 TCGA-EE-A29R-06 8 1513913 1513913 G A DLGAP2 Missense_Mutation p.R352K 0.30 deleterious(0) probably_damaging(0.992) TCGA-EE-A29R-06 8 17722261 17722261 C T FGL1 Splice_Site p.X260_splice 0.20 TCGA-EE-A29R-06 8 21959320 21959320 C T FAM160B2 Silent p.F603F 0.69 TCGA-EE-A29R-06 8 24251631 24251631 G A ADAMDEC1 Missense_Mutation p.E112K 0.38 tolerated(0.78) benign(0.21) TCGA-EE-A29R-06 8 25718853 25718853 G A EBF2 Missense_Mutation p.A379V 0.33 deleterious(0.02) benign(0.005) TCGA-EE-A29R-06 8 26614222 26614222 C T ADRA1A Intron 0.26 TCGA-EE-A29R-06 8 2813131 2813131 C T CSMD1 Missense_Mutation p.G3325E 0.56 probably_damaging(1) TCGA-EE-A29R-06 8 28573820 28573820 C T EXTL3 Silent p.L82L 0.66 TCGA-EE-A29R-06 8 30601740 30601740 C T UBXN8 RNA 0.28 TCGA-EE-A29R-06 8 35402016 35402016 C T UNC5D Intron 0.38 TCGA-EE-A29R-06 8 41546047 41546047 G A ANK1 Missense_Mutation p.L1430F 0.42 deleterious(0) benign(0.168) TCGA-EE-A29R-06 8 52339228 52339228 T A PXDNL Missense_Mutation p.Q539L 0.24 tolerated(0.25) benign(0.012) TCGA-EE-A29R-06 8 53062480 53062480 G A ST18 Nonsense_Mutation p.R622* 0.31 TCGA-EE-A29R-06 8 59547754 59547754 G A NSMAF Silent p.F140F 0.19 TCGA-EE-A29R-06 8 67425821 67425821 C T C8orf46 Missense_Mutation p.S130L 0.35 tolerated(0.32) benign(0) TCGA-EE-A29R-06 8 67791147 67791147 C T MCMDC2 Silent p.F234F 0.20 TCGA-EE-A29R-06 8 69020427 69020427 C T PREX2 Silent p.F933F 0.56 TCGA-EE-A29R-06 8 69633640 69633640 G A C8orf34 Missense_Mutation p.E458K 0.32 tolerated(0.1) benign(0.033) TCGA-EE-A29R-06 8 71619234 71619234 C T XKR9 Silent p.F113F 0.64 TCGA-EE-A29R-06 8 74205859 74205859 G A RPL7 5'UTR 0.59 TCGA-EE-A29R-06 8 77763404 77763404 C T ZFHX4 Missense_Mutation p.S1416F 0.26 possibly_damaging(0.683) TCGA-EE-A29R-06 8 82443501 82443501 G A FABP12 Missense_Mutation p.S17F 0.62 tolerated(1) benign(0) TCGA-EE-A29R-06 8 85097114 85097114 G A RALYL 5'UTR 0.83 TCGA-EE-A29R-06 8 87076557 87076557 G A PSKH2 Silent p.I163I 0.60 TCGA-EE-A29R-06 8 87235216 87235216 C T SLC7A13 Missense_Mutation p.E268K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29R-06 8 95272732 95272732 C T GEM 5'UTR 0.27 TCGA-EE-A29R-06 8 99039905 99039905 G A MATN2 Missense_Mutation p.G735E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 9 114371502 114371502 G A LRRC37A5P RNA 0.30 TCGA-EE-A29R-06 9 114371503 114371503 G A LRRC37A5P RNA 0.30 TCGA-EE-A29R-06 9 114825234 114825234 C T SUSD1 Silent p.E611E 0.42 TCGA-EE-A29R-06 9 122004453 122004453 C T BRINP1 Missense_Mutation p.D151N 0.92 tolerated(0.25) probably_damaging(0.989) TCGA-EE-A29R-06 9 127915925 127915925 G A PPP6C Missense_Mutation p.P223S 0.82 deleterious(0) probably_damaging(0.947) TCGA-EE-A29R-06 9 129641854 129641854 C T ZBTB34 Missense_Mutation p.P55L 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A29R-06 9 130494568 130494568 G A TOR2A Intron 0.88 TCGA-EE-A29R-06 9 131832147 131832147 C T FAM73B Missense_Mutation p.S493F 0.88 deleterious(0) probably_damaging(0.954) TCGA-EE-A29R-06 9 131891281 131891281 C T PPP2R4 Silent p.V78V 0.78 TCGA-EE-A29R-06 9 32631202 32631202 G A TAF1L Missense_Mutation p.P1459L 0.91 tolerated(0.3) benign(0.041) TCGA-EE-A29R-06 9 33465810 33465810 G A NOL6 Missense_Mutation p.S817L 0.90 tolerated(0.09) benign(0.108) TCGA-EE-A29R-06 9 33468379 33468379 G A NOL6 Silent p.F416F 0.42 TCGA-EE-A29R-06 9 35650624 35650624 G A SIT1 Silent p.S37S 0.93 TCGA-EE-A29R-06 9 38411538 38411538 G A IGFBPL1 Silent p.P232P 0.97 TCGA-EE-A29R-06 9 4701869 4701869 G A CDC37L1 Silent p.E251E 0.77 TCGA-EE-A29R-06 9 6013459 6013459 G A RANBP6 Missense_Mutation p.P717S 0.90 deleterious(0.03) possibly_damaging(0.882) TCGA-EE-A29R-06 9 6606657 6606657 C T GLDC Silent p.R216R 0.82 TCGA-EE-A29R-06 9 84607007 84607007 C T SPATA31D1 Missense_Mutation p.S541F 0.54 tolerated(0.16) benign(0.005) TCGA-EE-A29R-06 9 8504401 8504401 C T PTPRD Missense_Mutation p.R561Q 0.89 tolerated(0.37) possibly_damaging(0.512) TCGA-EE-A29R-06 9 8517990 8517990 C T PTPRD Missense_Mutation p.M467I 0.93 tolerated(0.1) benign(0.039) TCGA-EE-A29R-06 9 86506257 86506257 G A KIF27 Missense_Mutation p.H588Y 0.81 tolerated(1) benign(0.003) TCGA-EE-A29R-06 9 90502518 90502518 G A SPATA31E1 Missense_Mutation p.G1039E 0.88 tolerated(0.7) benign(0.003) TCGA-EE-A29R-06 9 94118217 94118217 C A AUH Missense_Mutation p.K122N 0.88 tolerated(0.46) benign(0.02) TCGA-EE-A29R-06 9 98997736 98997736 G A HSD17B3 3'UTR 0.52 TCGA-EE-A29R-06 X 100105279 100105279 T A NOX1 Missense_Mutation p.I332F 0.71 deleterious(0) probably_damaging(0.948) TCGA-EE-A29R-06 X 101095994 101095994 G A NXF5 Silent p.F158F 0.76 TCGA-EE-A29R-06 X 101409140 101409140 C T BEX5 Missense_Mutation p.G33E 0.74 tolerated(0.08) benign(0.096) TCGA-EE-A29R-06 X 102192565 102192565 C T RAB40AL Nonsense_Mutation p.R107* 0.62 TCGA-EE-A29R-06 X 105451247 105451247 G A MUM1L1 Missense_Mutation p.E608K 0.73 tolerated(0.66) benign(0.021) TCGA-EE-A29R-06 X 107863518 107863518 G A COL4A5 Missense_Mutation p.D847N 0.88 unknown(0) TCGA-EE-A29R-06 X 117053535 117053535 G A KLHL13 Silent p.F176F 0.83 TCGA-EE-A29R-06 X 119427889 119427889 G A TMEM255A Silent p.F73F 0.82 TCGA-EE-A29R-06 X 120008840 120008840 C T CT47B1 Missense_Mutation p.E229K 0.89 tolerated(0.37) unknown(0) TCGA-EE-A29R-06 X 132439841 132439841 C A GPC4 Nonsense_Mutation p.E372* 0.84 TCGA-EE-A29R-06 X 135430317 135430317 G A GPR112 Silent p.R1484R 0.79 TCGA-EE-A29R-06 X 142113783 142113783 C T SPANXN4 5'UTR 0.82 TCGA-EE-A29R-06 X 142717286 142717286 C T SLITRK4 Missense_Mutation p.E547K 0.82 deleterious(0) benign(0.192) TCGA-EE-A29R-06 X 151123888 151123888 G A GABRE Silent p.F363F 0.87 TCGA-EE-A29R-06 X 151336985 151336985 G A GABRA3 Silent p.I398I 0.84 TCGA-EE-A29R-06 X 152815107 152815107 G A ATP2B3 Silent p.E497E 0.92 TCGA-EE-A29R-06 X 153171962 153171962 C T AVPR2 Intron 0.87 TCGA-EE-A29R-06 X 19379467 19379467 G A MAP3K15 Missense_Mutation p.L1283F 0.87 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A29R-06 X 23398303 23398303 G A PTCHD1 Missense_Mutation p.G316E 0.87 deleterious(0) probably_damaging(0.929) TCGA-EE-A29R-06 X 24007015 24007015 G A KLHL15 Missense_Mutation p.P280S 0.83 tolerated(0.71) benign(0.212) TCGA-EE-A29R-06 X 3229544 3229544 G A MXRA5 Missense_Mutation p.L2234F 0.89 tolerated(0.05) probably_damaging(0.98) TCGA-EE-A29R-06 X 36156123 36156123 C T CHDC2 Missense_Mutation p.S365L 1.00 tolerated(1) benign(0.01) TCGA-EE-A29R-06 X 48320620 48320620 G A SLC38A5 Missense_Mutation p.S211L 0.71 tolerated(0.06) possibly_damaging(0.627) TCGA-EE-A29R-06 X 49061780 49061780 G A CACNA1F Silent p.F1917F 0.83 TCGA-EE-A29R-06 X 49072962 49072962 C T CACNA1F Missense_Mutation p.G1050E 1.00 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A29R-06 X 49455970 49455970 C T PAGE1 Silent p.E58E 0.71 TCGA-EE-A29R-06 X 50052215 50052215 C T CCNB3 Missense_Mutation p.S349L 0.91 deleterious(0.01) benign(0.18) TCGA-EE-A29R-06 X 54275668 54275668 T A WNK3 Missense_Mutation p.D1038V 0.81 deleterious(0) benign(0.097) TCGA-EE-A29R-06 X 55650545 55650545 C T FOXR2 Missense_Mutation p.S134F 0.80 deleterious(0.03) benign(0.142) TCGA-EE-A29R-06 X 70331331 70331331 C G IL2RG Missense_Mutation p.G20A 0.86 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A29R-06 X 72667297 72667297 G A CDX4 Missense_Mutation p.G70R 0.53 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29R-06 X 72667298 72667298 G A CDX4 Missense_Mutation p.G70E 0.53 deleterious(0.02) benign(0.137) TCGA-EE-A29R-06 X 73064757 73064757 G A XIST RNA 0.81 TCGA-EE-A29R-06 X 75648636 75648636 C A MAGEE1 Missense_Mutation p.L105M 0.14 tolerated_low_confidence(0.16) benign(0.02) TCGA-EE-A29R-06 X 86877370 86877370 G A KLHL4 Missense_Mutation p.G362R 0.72 tolerated(0.53) benign(0.002) TCGA-EE-A29R-06 X 99605676 99605676 G T PCDH19 Missense_Mutation p.N881K 0.93 deleterious(0.01) benign(0.434) TCGA-EE-A29S-06 10 100159935 100159935 G A PYROXD2 Missense_Mutation p.P132L 0.17 deleterious(0.03) benign(0.288) TCGA-EE-A29S-06 10 102734785 102734785 A C SEMA4G Intron 0.36 TCGA-EE-A29S-06 10 102734786 102734786 A T SEMA4G Intron 0.36 TCGA-EE-A29S-06 10 102763365 102763365 C G LZTS2 Silent p.T170T 0.27 TCGA-EE-A29S-06 10 104156724 104156724 C T NFKB2 Missense_Mutation p.R103C 0.41 deleterious(0) benign(0.165) TCGA-EE-A29S-06 10 105162875 105162875 T C PDCD11 Missense_Mutation p.S79P 0.33 tolerated(0.06) benign(0.16) TCGA-EE-A29S-06 10 105642577 105642577 G A OBFC1 Silent p.F324F 0.31 TCGA-EE-A29S-06 10 106163510 106163510 G A CCDC147 Missense_Mutation p.R688K 0.35 tolerated(0.64) benign(0.011) TCGA-EE-A29S-06 10 106214259 106214259 C T CCDC147 Missense_Mutation p.P864S 0.36 tolerated(0.86) benign(0.012) TCGA-EE-A29S-06 10 107006990 107006990 C T SORCS3 Silent p.S1002S 0.39 TCGA-EE-A29S-06 10 114053575 114053575 T G TECTB Missense_Mutation p.V188G 0.28 deleterious(0) benign(0.243) TCGA-EE-A29S-06 10 116046165 116046165 G A VWA2 Missense_Mutation p.E489K 0.32 tolerated(0.28) benign(0.02) TCGA-EE-A29S-06 10 117704202 117704202 C T ATRNL1 Missense_Mutation p.S1351L 0.32 tolerated(0.06) benign(0.046) TCGA-EE-A29S-06 10 118314901 118314901 G A PNLIP Silent p.G231G 0.29 TCGA-EE-A29S-06 10 120801507 120801507 T C EIF3A Silent p.P1175P 0.23 TCGA-EE-A29S-06 10 12206488 12206488 G A SEC61A2 3'UTR 0.43 TCGA-EE-A29S-06 10 122349048 122349048 G A PPAPDC1A 3'UTR 0.29 TCGA-EE-A29S-06 10 1229275 1229275 G T ADARB2 Missense_Mutation p.P693H 0.35 tolerated(0.06) probably_damaging(1) TCGA-EE-A29S-06 10 123247617 123247617 C T FGFR2 Missense_Mutation p.R626Q 0.29 deleterious(0) possibly_damaging(0.763) TCGA-EE-A29S-06 10 123279680 123279680 C T FGFR2 Missense_Mutation p.R251Q 0.39 deleterious(0) benign(0.375) TCGA-EE-A29S-06 10 131646670 131646670 C T EBF3 Missense_Mutation p.E363K 0.34 deleterious(0.01) possibly_damaging(0.716) TCGA-EE-A29S-06 10 13489312 13489312 G A BEND7 Silent p.I345I 0.37 TCGA-EE-A29S-06 10 135032558 135032558 G A KNDC1 Silent p.K1608K 0.26 TCGA-EE-A29S-06 10 20290748 20290748 G A PLXDC2 Missense_Mutation p.E53K 0.40 tolerated_low_confidence(0.46) benign(0.021) TCGA-EE-A29S-06 10 20465933 20465933 C T PLXDC2 Nonsense_Mutation p.R297* 0.32 TCGA-EE-A29S-06 10 24784106 24784106 G A KIAA1217 Silent p.R605R 0.38 TCGA-EE-A29S-06 10 24832259 24832259 G A KIAA1217 Missense_Mutation p.E1354K 0.36 tolerated(0.93) benign(0) TCGA-EE-A29S-06 10 26462931 26462931 G A MYO3A Silent p.E1246E 0.36 TCGA-EE-A29S-06 10 26463486 26463486 G A MYO3A Silent p.Q1431Q 0.27 TCGA-EE-A29S-06 10 26849069 26849069 G A APBB1IP Silent p.K397K 0.36 TCGA-EE-A29S-06 10 28420537 28420537 C T MPP7 Silent p.E133E 0.28 TCGA-EE-A29S-06 10 30318261 30318261 C T KIAA1462 Silent p.T272T 0.30 TCGA-EE-A29S-06 10 31809946 31809946 C T ZEB1 Silent p.L562L 0.32 TCGA-EE-A29S-06 10 32326471 32326471 G A KIF5B Missense_Mutation p.S188F 0.40 deleterious(0.03) possibly_damaging(0.646) TCGA-EE-A29S-06 10 35495854 35495854 C T CREM Silent p.I210I 0.30 TCGA-EE-A29S-06 10 43691678 43691678 G A RASGEF1A 3'UTR 0.29 TCGA-EE-A29S-06 10 44140198 44140198 G A ZNF32 Missense_Mutation p.S41F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-EE-A29S-06 10 45499485 45499485 C T ZNF22 Silent p.L223L 0.30 TCGA-EE-A29S-06 10 45938623 45938623 C T ALOX5 Silent p.F470F 0.33 TCGA-EE-A29S-06 10 45940956 45940956 C T ALOX5 Silent p.L616L 0.25 TCGA-EE-A29S-06 10 48388700 48388700 G A RBP3 Silent p.L726L 0.32 TCGA-EE-A29S-06 10 48388744 48388744 C T RBP3 Missense_Mutation p.E712K 0.26 tolerated(0.12) benign(0.292) TCGA-EE-A29S-06 10 49448441 49448441 G A FRMPD2 Missense_Mutation p.P221L 0.39 tolerated(0.06) benign(0.404) TCGA-EE-A29S-06 10 49654598 49654598 C T ARHGAP22 Missense_Mutation p.E661K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 10 50530730 50530730 C T C10orf71 Missense_Mutation p.S47F 0.35 deleterious(0.04) benign(0.066) TCGA-EE-A29S-06 10 6157213 6157213 C T RBM17 Silent p.A347A 0.40 TCGA-EE-A29S-06 10 61865815 61865815 G A ANK3 Missense_Mutation p.P1059L 0.14 probably_damaging(1) TCGA-EE-A29S-06 10 6506358 6506358 G A PRKCQ Silent p.L454L 0.32 TCGA-EE-A29S-06 10 6525506 6525506 G A PRKCQ Missense_Mutation p.L359F 0.38 tolerated(0.71) benign(0.043) TCGA-EE-A29S-06 10 71021050 71021050 G A HKDC1 Missense_Mutation p.S791N 0.31 deleterious(0.04) possibly_damaging(0.884) TCGA-EE-A29S-06 10 75480305 75480305 G A RP11-574K11.28 RNA 0.24 TCGA-EE-A29S-06 10 7628007 7628007 A C ITIH5 Missense_Mutation p.L322R 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 10 76972009 76972009 A G VDAC2 Missense_Mutation p.Y33C 0.42 deleterious(0.04) possibly_damaging(0.654) TCGA-EE-A29S-06 10 79581146 79581146 G C DLG5 Silent p.S1032S 0.30 TCGA-EE-A29S-06 10 81056152 81056152 C T ZMIZ1 Intron 0.34 TCGA-EE-A29S-06 10 81061875 81061875 C T ZMIZ1 Silent p.F677F 0.37 TCGA-EE-A29S-06 10 90537773 90537773 C T LIPN Missense_Mutation p.P324L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 10 90773113 90773113 T A FAS Missense_Mutation p.I222K 0.17 deleterious(0) benign(0.005) TCGA-EE-A29S-06 10 95552551 95552551 G A LGI1 Silent p.V185V 0.31 TCGA-EE-A29S-06 10 95557002 95557002 C T LGI1 Silent p.S372S 0.38 TCGA-EE-A29S-06 10 95719027 95719027 C T PIPSL RNA 0.28 TCGA-EE-A29S-06 10 95719344 95719344 C T PIPSL RNA 0.18 TCGA-EE-A29S-06 10 95720504 95720504 G A PIPSL RNA 0.34 TCGA-EE-A29S-06 10 96540295 96540295 C T CYP2C19 Missense_Mutation p.P174L 0.33 deleterious(0.01) possibly_damaging(0.467) TCGA-EE-A29S-06 10 96541696 96541696 C T CYP2C19 Missense_Mutation p.S254L 0.30 deleterious(0.01) benign(0.064) TCGA-EE-A29S-06 10 96745844 96745844 C T CYP2C9 Missense_Mutation p.P402S 0.31 tolerated(0.07) benign(0.323) TCGA-EE-A29S-06 10 98744512 98744512 C T C10orf12 Missense_Mutation p.P1122L 0.35 tolerated(0.13) benign(0.023) TCGA-EE-A29S-06 10 99219276 99219276 G A MMS19 Missense_Mutation p.S916F 0.34 deleterious(0.02) possibly_damaging(0.827) TCGA-EE-A29S-06 10 99330294 99330294 C T UBTD1 3'UTR 0.29 TCGA-EE-A29S-06 11 102743641 102743641 C T MMP12 RNA 0.59 TCGA-EE-A29S-06 11 103049768 103049768 G T DYNC2H1 Missense_Mutation p.W2051C 0.58 probably_damaging(1) TCGA-EE-A29S-06 11 10517123 10517123 G T AMPD3 Missense_Mutation p.A434S 0.29 tolerated(0.3) possibly_damaging(0.467) TCGA-EE-A29S-06 11 10517124 10517124 C T AMPD3 Missense_Mutation p.A434V 0.29 tolerated(0.33) probably_damaging(0.968) TCGA-EE-A29S-06 11 10518445 10518445 A G AMPD3 Missense_Mutation p.N515S 0.30 deleterious(0.02) possibly_damaging(0.814) TCGA-EE-A29S-06 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 11 108383909 108383909 C T EXPH5 Silent p.R775R 0.50 TCGA-EE-A29S-06 11 1104206 1104206 C T MUC2 Silent p.L2799L 0.20 TCGA-EE-A29S-06 11 113283384 113283384 C T DRD2 Silent p.Q344Q 0.42 TCGA-EE-A29S-06 11 1157589 1157589 G A MUC5AC Missense_Mutation p.R257K 0.18 tolerated(1) benign(0) TCGA-EE-A29S-06 11 116655590 116655590 C T ZNF259 Silent p.Q267Q 0.47 TCGA-EE-A29S-06 11 116691551 116691551 C T APOA4 3'UTR 0.47 TCGA-EE-A29S-06 11 121440892 121440892 C T SORL1 Missense_Mutation p.R1084C 0.52 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A29S-06 11 123753985 123753985 C T TMEM225 Missense_Mutation p.E180K 0.51 tolerated(0.38) benign(0.012) TCGA-EE-A29S-06 11 123893749 123893749 C T OR10G9 Silent p.F10F 0.41 TCGA-EE-A29S-06 11 128709250 128709250 G A KCNJ1 Missense_Mutation p.P316S 0.53 deleterious(0.03) possibly_damaging(0.596) TCGA-EE-A29S-06 11 129780501 129780501 G A PRDM10 Silent p.L1015L 0.43 TCGA-EE-A29S-06 11 130332676 130332676 G A ADAMTS15 Splice_Site p.X514_splice 0.42 TCGA-EE-A29S-06 11 1466993 1466993 C T BRSK2 Missense_Mutation p.P407L 0.37 deleterious(0) possibly_damaging(0.762) TCGA-EE-A29S-06 11 14990422 14990422 C T CALCA Missense_Mutation p.G117R 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A29S-06 11 17434970 17434970 G A ABCC8 Missense_Mutation p.H816Y 0.30 tolerated(0.79) benign(0.063) TCGA-EE-A29S-06 11 18054890 18054890 C T TPH1 Silent p.K111K 0.32 TCGA-EE-A29S-06 11 20625867 20625867 G A SLC6A5 Silent p.G192G 0.39 TCGA-EE-A29S-06 11 2443453 2443453 C T TRPM5 Silent p.V72V 0.32 TCGA-EE-A29S-06 11 27412695 27412695 T C LGR4 Missense_Mutation p.Q116R 0.45 tolerated(0.15) benign(0.199) TCGA-EE-A29S-06 11 31312273 31312273 G A DCDC1 Missense_Mutation p.S294L 0.31 deleterious(0.02) possibly_damaging(0.878) TCGA-EE-A29S-06 11 32624400 32624400 C T CCDC73 Missense_Mutation p.R1066K 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29S-06 11 35685316 35685316 T C TRIM44 Silent p.F219F 0.34 TCGA-EE-A29S-06 11 36614256 36614256 A G RAG2 Missense_Mutation p.L488P 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29S-06 11 36614441 36614441 A G RAG2 Silent p.D426D 0.35 TCGA-EE-A29S-06 11 428574 428574 G A ANO9 Silent p.F362F 0.32 TCGA-EE-A29S-06 11 43513659 43513659 C T TTC17 Silent p.I1080I 0.35 TCGA-EE-A29S-06 11 46748309 46748309 C T F2 Missense_Mutation p.T351I 0.35 deleterious(0.05) benign(0.179) TCGA-EE-A29S-06 11 46911083 46911083 C A LRP4 Silent p.G698G 0.36 TCGA-EE-A29S-06 11 4703487 4703487 G A OR51E2 Missense_Mutation p.S152F 0.27 tolerated(0.5) benign(0.009) TCGA-EE-A29S-06 11 4703813 4703813 G A OR51E2 Silent p.I43I 0.38 TCGA-EE-A29S-06 11 48161221 48161221 A T PTPRJ Missense_Mutation p.E779V 0.23 deleterious(0.04) benign(0.15) TCGA-EE-A29S-06 11 48510659 48510659 C T OR4A47 Silent p.F105F 0.18 TCGA-EE-A29S-06 11 48511189 48511189 C A OR4A47 Missense_Mutation p.P282H 0.37 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-EE-A29S-06 11 48511190 48511190 C T OR4A47 Silent p.P282P 0.36 TCGA-EE-A29S-06 11 4928916 4928916 G T OR51A7 Missense_Mutation p.G106V 0.27 tolerated(0.49) benign(0.068) TCGA-EE-A29S-06 11 4928917 4928917 A T OR51A7 Silent p.G106G 0.25 TCGA-EE-A29S-06 11 4936436 4936436 G A OR51G2 Missense_Mutation p.S153F 0.37 tolerated(0.58) probably_damaging(0.972) TCGA-EE-A29S-06 11 5020531 5020531 C T OR51L1 Missense_Mutation p.H107Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A29S-06 11 5068338 5068338 C T OR52J3 Missense_Mutation p.R195C 0.33 deleterious(0.01) benign(0.047) TCGA-EE-A29S-06 11 51411990 51411990 G A OR4A5 Nonsense_Mutation p.R136* 0.44 TCGA-EE-A29S-06 11 5153353 5153353 T C OR52A5 Missense_Mutation p.T174A 0.38 deleterious(0.02) possibly_damaging(0.517) TCGA-EE-A29S-06 11 5253961 5253961 C T HBD 3'Flank 0.25 TCGA-EE-A29S-06 11 5254068 5254068 T C HBD 3'UTR 0.31 TCGA-EE-A29S-06 11 5270642 5270642 C T HBG1 Missense_Mutation p.E91K 0.19 tolerated(0.21) possibly_damaging(0.822) TCGA-EE-A29S-06 11 5275566 5275566 C T HBG2 Missense_Mutation p.E91K 0.11 tolerated(0.21) possibly_damaging(0.822) TCGA-EE-A29S-06 11 5529598 5529598 G A UBQLN3 Silent p.P397P 0.32 TCGA-EE-A29S-06 11 55432652 55432652 C T OR4C6 Nonsense_Mutation p.Q4* 0.32 TCGA-EE-A29S-06 11 55653012 55653012 G A TRIM51 Silent p.R36R 0.27 TCGA-EE-A29S-06 11 5565953 5565953 G A OR52H1 Silent p.I267I 0.40 TCGA-EE-A29S-06 11 55861680 55861680 T A OR8I2 Silent p.A299A 0.29 TCGA-EE-A29S-06 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.30 TCGA-EE-A29S-06 11 55890316 55890316 C T OR8H3 Silent p.S156S 0.40 TCGA-EE-A29S-06 11 55999628 55999628 C T OR5T2 Missense_Mutation p.G345E 0.46 tolerated(0.65) benign(0.002) TCGA-EE-A29S-06 11 56431806 56431806 C T OR5AR1 Silent p.F215F 0.29 TCGA-EE-A29S-06 11 5665066 5665066 T A TRIM34 3'UTR 0.40 TCGA-EE-A29S-06 11 56756999 56756999 G A OR5AK2 Missense_Mutation p.G204E 0.40 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A29S-06 11 56949692 56949692 G A LRRC55 Missense_Mutation p.D109N 0.38 tolerated(0.08) probably_damaging(0.995) TCGA-EE-A29S-06 11 5758008 5758008 C T OR56B1 Missense_Mutation p.P88S 0.34 deleterious(0.01) benign(0.27) TCGA-EE-A29S-06 11 5776362 5776362 C T OR52N4 Missense_Mutation p.P131L 0.35 deleterious(0) probably_damaging(0.95) TCGA-EE-A29S-06 11 57798800 57798800 C T OR6Q1 Missense_Mutation p.R126C 0.39 deleterious(0.01) benign(0.003) TCGA-EE-A29S-06 11 58189847 58189847 C T OR5B2 Silent p.Q296Q 0.28 TCGA-EE-A29S-06 11 58380311 58380311 C T ZFP91 Nonsense_Mutation p.Q329* 0.26 TCGA-EE-A29S-06 11 58478002 58478002 G A GLYAT Intron 0.30 TCGA-EE-A29S-06 11 58480261 58480261 G A GLYAT Silent p.I96I 0.31 TCGA-EE-A29S-06 11 58491920 58491920 G A GLYAT Missense_Mutation p.S17F 0.31 deleterious(0.01) benign(0.236) TCGA-EE-A29S-06 11 58660235 58660235 C T GLYATL1P2 RNA 0.45 TCGA-EE-A29S-06 11 59245604 59245604 G A OR4D10 Silent p.R234R 0.40 TCGA-EE-A29S-06 11 59623456 59623456 C T TCN1 Missense_Mutation p.E275K 0.20 tolerated(0.16) benign(0.065) TCGA-EE-A29S-06 11 6008152 6008152 C T OR52L1 Silent p.L3L 0.24 TCGA-EE-A29S-06 11 62284167 62284167 G A AHNAK 3'UTR 0.25 TCGA-EE-A29S-06 11 62301156 62301156 G A AHNAK Nonsense_Mutation p.Q245* 0.25 TCGA-EE-A29S-06 11 6265409 6265409 C T CNGA4 Silent p.L500L 0.34 TCGA-EE-A29S-06 11 62948193 62948193 G A SLC22A25 Missense_Mutation p.L337F 0.20 deleterious(0.03) benign(0.378) TCGA-EE-A29S-06 11 63137845 63137845 C T SLC22A9 Missense_Mutation p.P106L 0.32 tolerated(0.16) benign(0.008) TCGA-EE-A29S-06 11 64525340 64525340 C T PYGM Missense_Mutation p.E191K 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 11 64627595 64627595 G A EHD1 Missense_Mutation p.S239F 0.27 deleterious(0) possibly_damaging(0.844) TCGA-EE-A29S-06 11 64757231 64757231 G A BATF2 Silent p.S65S 0.34 TCGA-EE-A29S-06 11 65046208 65046208 C G POLA2 Missense_Mutation p.P157A 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29S-06 11 65046209 65046209 C T POLA2 Missense_Mutation p.P157L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 11 65545737 65545737 G A AP5B1 Missense_Mutation p.L743F 0.23 deleterious(0.01) possibly_damaging(0.808) TCGA-EE-A29S-06 11 66191412 66191412 C T NPAS4 Missense_Mutation p.L351F 0.30 tolerated(0.58) benign(0.001) TCGA-EE-A29S-06 11 66358132 66358132 G A CCDC87 Silent p.S785S 0.32 TCGA-EE-A29S-06 11 67402535 67402535 C T TBX10 Silent p.L69L 0.39 TCGA-EE-A29S-06 11 679729 679729 G A DEAF1 Missense_Mutation p.S362L 0.34 deleterious(0) probably_damaging(0.989) TCGA-EE-A29S-06 11 68030376 68030376 G A C11orf24 Silent p.V29V 0.27 TCGA-EE-A29S-06 11 6806562 6806562 C T OR2AG1 Silent p.A98A 0.30 TCGA-EE-A29S-06 11 71808986 71808986 A G LAMTOR1 Intron 0.32 TCGA-EE-A29S-06 11 72296629 72296629 G A PDE2A Silent p.L397L 0.25 TCGA-EE-A29S-06 11 7335104 7335104 C T SYT9 Missense_Mutation p.H326Y 0.32 deleterious(0) benign(0.102) TCGA-EE-A29S-06 11 73988184 73988184 C T P4HA3 Nonsense_Mutation p.W394* 0.17 TCGA-EE-A29S-06 11 74994428 74994428 G A ARRB1 Missense_Mutation p.S86L 0.31 tolerated(0.15) benign(0.003) TCGA-EE-A29S-06 11 764378 764378 C T TALDO1 Missense_Mutation p.S309F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 11 76969473 76969473 G A GDPD4 Silent p.F274F 0.32 TCGA-EE-A29S-06 11 7949293 7949293 C T OR10A6 Missense_Mutation p.R306Q 0.37 tolerated(0.9) benign(0.004) TCGA-EE-A29S-06 11 8008883 8008883 C T EIF3F 5'UTR 0.30 TCGA-EE-A29S-06 11 803367 803367 G A PIDD Silent p.A172A 0.40 TCGA-EE-A29S-06 11 85396715 85396715 C T CCDC89 Silent p.E153E 0.55 TCGA-EE-A29S-06 11 92623991 92623991 C T FAT3 Silent p.L4494L 0.51 TCGA-EE-A29S-06 11 94278472 94278472 G A FUT4 Silent p.P391P 0.22 TCGA-EE-A29S-06 11 99690341 99690341 C T CNTN5 Missense_Mutation p.S41L 0.29 deleterious_low_confidence(0) benign(0.327) TCGA-EE-A29S-06 11 99872775 99872775 G A CNTN5 Missense_Mutation p.G296E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 11 99941237 99941237 G A CNTN5 Missense_Mutation p.G415E 0.54 deleterious(0) probably_damaging(0.992) TCGA-EE-A29S-06 12 101017576 101017576 A T GAS2L3 Silent p.S331S 0.44 TCGA-EE-A29S-06 12 101488033 101488033 G A ANO4 Splice_Site p.X533_splice 0.52 TCGA-EE-A29S-06 12 10275963 10275963 C T CLEC7A Splice_Site p.X165_splice 0.30 TCGA-EE-A29S-06 12 104063395 104063395 G A STAB2 Missense_Mutation p.G750E 0.42 deleterious(0) probably_damaging(0.961) TCGA-EE-A29S-06 12 108106039 108106039 T G PWP1 3'UTR 0.63 TCGA-EE-A29S-06 12 111317776 111317776 C T CCDC63 Nonsense_Mutation p.R186* 0.45 TCGA-EE-A29S-06 12 113425019 113425019 C T OAS2 Silent p.F118F 0.58 TCGA-EE-A29S-06 12 113447076 113447076 G A OAS2 Intron 0.48 TCGA-EE-A29S-06 12 11546770 11546770 G A PRB2 Missense_Mutation p.P81L 0.20 tolerated(0.55) unknown(0) TCGA-EE-A29S-06 12 118198935 118198935 C T KSR2 Silent p.G289G 0.51 TCGA-EE-A29S-06 12 124090489 124090489 C T DDX55 Silent p.I40I 0.47 TCGA-EE-A29S-06 12 124827585 124827585 G A NCOR2 Silent p.P1634P 0.56 TCGA-EE-A29S-06 12 125453429 125453429 G A DHX37 Missense_Mutation p.P426L 0.61 deleterious(0.01) benign(0.326) TCGA-EE-A29S-06 12 130845883 130845883 G A PIWIL1 Missense_Mutation p.M608I 0.47 tolerated(0.1) benign(0.151) TCGA-EE-A29S-06 12 14794068 14794068 C T GUCY2C Silent p.E672E 0.37 TCGA-EE-A29S-06 12 15035175 15035175 C T MGP Silent p.R95R 0.32 TCGA-EE-A29S-06 12 18836243 18836243 G A PLCZ1 Missense_Mutation p.P586L 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A29S-06 12 18837205 18837205 G A PLCZ1 Missense_Mutation p.P534S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 12 21199994 21199994 C T SLCO1B7 Silent p.F279F 0.25 TCGA-EE-A29S-06 12 21459858 21459858 C T SLCO1A2 Missense_Mutation p.E134K 0.31 tolerated(0.5) benign(0.022) TCGA-EE-A29S-06 12 21487579 21487579 C T SLCO1A2 Translation_Start_Site p.M1? 0.22 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A29S-06 12 21531406 21531406 C T IAPP 3'UTR 0.31 TCGA-EE-A29S-06 12 21807540 21807540 A G LDHB Silent p.N22N 0.29 TCGA-EE-A29S-06 12 21997449 21997449 G A ABCC9 Missense_Mutation p.R1095C 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A29S-06 12 27089609 27089609 G A ASUN Missense_Mutation p.P43L 0.26 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29S-06 12 3129850 3129850 C T TEAD4 Missense_Mutation p.P212S 0.39 tolerated(0.07) possibly_damaging(0.687) TCGA-EE-A29S-06 12 31814976 31814976 C T METTL20 Missense_Mutation p.P30L 0.29 tolerated(0.17) possibly_damaging(0.573) TCGA-EE-A29S-06 12 352844 352844 C T SLC6A13 Splice_Site p.X113_splice 0.36 TCGA-EE-A29S-06 12 39734154 39734154 G A KIF21A Missense_Mutation p.S708F 0.31 deleterious(0.01) possibly_damaging(0.498) TCGA-EE-A29S-06 12 43826237 43826237 C T ADAMTS20 Missense_Mutation p.R989Q 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 12 46242662 46242662 C T ARID2 Nonsense_Mutation p.R542* 0.49 TCGA-EE-A29S-06 12 49165495 49165495 C T ADCY6 Missense_Mutation p.E1017K 0.27 tolerated(0.06) possibly_damaging(0.688) TCGA-EE-A29S-06 12 49167277 49167277 C T ADCY6 Missense_Mutation p.D866N 0.23 deleterious(0.01) possibly_damaging(0.726) TCGA-EE-A29S-06 12 4920202 4920202 G A KCNA6 Missense_Mutation p.G332E 0.35 deleterious(0.03) probably_damaging(1) TCGA-EE-A29S-06 12 49318397 49318397 G A FKBP11 Missense_Mutation p.S77F 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 12 50050217 50050217 G A FMNL3 Silent p.I285I 0.29 TCGA-EE-A29S-06 12 52939383 52939383 C T KRT71 Silent p.R442R 0.46 TCGA-EE-A29S-06 12 53069303 53069303 C T KRT1 Missense_Mutation p.G537S 0.53 tolerated(0.25) unknown(0) TCGA-EE-A29S-06 12 55863875 55863875 C T OR6C70 Silent p.T16T 0.48 TCGA-EE-A29S-06 12 5708726 5708726 C T ANO2 Silent p.S719S 0.38 TCGA-EE-A29S-06 12 57921962 57921963 - C MBD6 Frame_Shift_Ins p.E816Rfs*32 0.31 TCGA-EE-A29S-06 12 58000659 58000659 C T DTX3 Silent p.L5L 0.56 TCGA-EE-A29S-06 12 62148789 62148789 C T FAM19A2 Silent p.T41T 0.58 TCGA-EE-A29S-06 12 66345254 66345254 G A HMGA2 Intron 0.34 TCGA-EE-A29S-06 12 6691950 6691950 G A CHD4 Intron 0.31 TCGA-EE-A29S-06 12 6761506 6761506 G A ING4 Silent p.P193P 0.35 TCGA-EE-A29S-06 12 68553396 68553396 C T IFNG 5'UTR 0.36 TCGA-EE-A29S-06 12 70918312 70918312 C T PTPRB Silent p.R2188R 0.28 TCGA-EE-A29S-06 12 70980945 70980945 G A PTPRB Missense_Mutation p.S718F 0.25 tolerated(0.51) benign(0.078) TCGA-EE-A29S-06 12 71029730 71029730 C T PTPRB Missense_Mutation p.E58K 0.32 tolerated_low_confidence(0.21) benign(0.075) TCGA-EE-A29S-06 12 7586231 7586231 C T CD163L1 Missense_Mutation p.E62K 0.31 deleterious(0) probably_damaging(0.989) TCGA-EE-A29S-06 12 7586232 7586232 C T CD163L1 Silent p.V61V 0.30 TCGA-EE-A29S-06 12 7637763 7637763 C T CD163 Nonsense_Mutation p.W903* 0.33 TCGA-EE-A29S-06 12 7637811 7637811 G A CD163 Missense_Mutation p.P887L 0.34 tolerated(0.5) benign(0.004) TCGA-EE-A29S-06 12 7651720 7651720 G A CD163 Silent p.I174I 0.33 TCGA-EE-A29S-06 12 80663925 80663925 C T OTOGL Missense_Mutation p.P828S 0.24 tolerated(0.16) benign(0.047) TCGA-EE-A29S-06 12 80729895 80729895 C T OTOGL Silent p.I1516I 0.49 TCGA-EE-A29S-06 12 8666217 8666217 G A CLEC4D 5'UTR 0.50 TCGA-EE-A29S-06 12 88478622 88478622 T C CEP290 Missense_Mutation p.K1482R 0.67 benign(0.052) TCGA-EE-A29S-06 12 9227198 9227198 G A A2M Silent p.I1238I 0.29 TCGA-EE-A29S-06 12 92537893 92537893 G A BTG1 Missense_Mutation p.P160L 0.46 deleterious(0) possibly_damaging(0.585) TCGA-EE-A29S-06 12 92537894 92537894 G T BTG1 Missense_Mutation p.P160T 0.47 deleterious(0) benign(0.088) TCGA-EE-A29S-06 12 97151344 97151344 C T C12orf55 Missense_Mutation p.S2673L 0.39 deleterious(0.01) benign(0.133) TCGA-EE-A29S-06 13 110850973 110850973 G A COL4A1 Missense_Mutation p.P376S 0.43 unknown(0) TCGA-EE-A29S-06 13 113487281 113487281 C T ATP11A Silent p.S501S 0.32 TCGA-EE-A29S-06 13 25376564 25376564 G A RNF17 Missense_Mutation p.V602I 0.41 deleterious(0.04) possibly_damaging(0.785) TCGA-EE-A29S-06 13 25672237 25672237 G A PABPC3 3'UTR 0.30 TCGA-EE-A29S-06 13 28622425 28622425 C T FLT3 Missense_Mutation p.D398N 0.29 tolerated(0.49) benign(0) TCGA-EE-A29S-06 13 29599330 29599330 G A MTUS2 Silent p.K175K 0.33 TCGA-EE-A29S-06 13 32776087 32776087 C T FRY Silent p.P1252P 0.27 TCGA-EE-A29S-06 13 42161676 42161676 G A VWA8 Missense_Mutation p.A1748V 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 13 42249370 42249370 G A VWA8 Nonsense_Mutation p.R1464* 0.30 TCGA-EE-A29S-06 13 60240802 60240802 C T DIAPH3 Silent p.K1166K 0.41 TCGA-EE-A29S-06 13 76395452 76395452 G A LMO7 Missense_Mutation p.G550R 0.41 tolerated(0.15) benign(0.009) TCGA-EE-A29S-06 13 88328960 88328960 C T SLITRK5 Silent p.H439H 0.28 TCGA-EE-A29S-06 13 95227019 95227019 G A TGDS 3'UTR 0.27 TCGA-EE-A29S-06 14 100172934 100172934 C T CYP46A1 Intron 0.30 TCGA-EE-A29S-06 14 101200537 101200537 C T DLK1 Silent p.S152S 0.34 TCGA-EE-A29S-06 14 102484839 102484839 C T DYNC1H1 Silent p.S2743S 0.32 TCGA-EE-A29S-06 14 102489128 102489128 A G DYNC1H1 Missense_Mutation p.I2850V 0.35 benign(0.023) TCGA-EE-A29S-06 14 105410826 105410826 C T AHNAK2 Silent p.G3654G 0.23 TCGA-EE-A29S-06 14 105846165 105846165 C T PACS2 Missense_Mutation p.P350L 0.36 deleterious(0.05) probably_damaging(1) TCGA-EE-A29S-06 14 106805497 106805497 C T IGHV4-31 Silent p.Q22Q 0.20 TCGA-EE-A29S-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.06 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A29S-06 14 19563637 19563637 C T POTEG Intron 0.14 TCGA-EE-A29S-06 14 20019999 20019999 C T POTEM Silent p.G74G 0.08 TCGA-EE-A29S-06 14 20296445 20296445 C T OR4N2 Missense_Mutation p.P280S 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A29S-06 14 20388834 20388834 C A OR4K5 Silent p.L23L 0.18 TCGA-EE-A29S-06 14 20388835 20388835 C T OR4K5 Nonsense_Mutation p.Q24* 0.18 TCGA-EE-A29S-06 14 20482883 20482883 G A OR4K14 Missense_Mutation p.S157F 0.46 deleterious(0) probably_damaging(0.962) TCGA-EE-A29S-06 14 20502402 20502402 A G OR4K13 Silent p.N172N 0.30 TCGA-EE-A29S-06 14 20692321 20692321 C T OR11H6 Silent p.P151P 0.32 TCGA-EE-A29S-06 14 22133614 22133614 C T OR4E2 Silent p.L106L 0.26 TCGA-EE-A29S-06 14 22564827 22564827 C T TRDV1 Missense_Mutation p.S93F 0.36 tolerated(0.12) benign(0.368) TCGA-EE-A29S-06 14 22740377 22740377 C T TRAV38-1 Missense_Mutation p.S94F 0.32 tolerated(0.09) probably_damaging(0.946) TCGA-EE-A29S-06 14 23896074 23896074 C T MYH7 Splice_Site p.X653_splice 0.32 TCGA-EE-A29S-06 14 23945579 23945579 C T NGDN Missense_Mutation p.P226S 0.37 tolerated(0.4) benign(0.13) TCGA-EE-A29S-06 14 28734072 28734072 G A BNIP3P1 RNA 0.30 TCGA-EE-A29S-06 14 28734282 28734282 T C BNIP3P1 RNA 0.35 TCGA-EE-A29S-06 14 31626368 31626368 G A HECTD1 Intron 0.30 TCGA-EE-A29S-06 14 33016037 33016037 C T AKAP6 Silent p.S726S 0.27 TCGA-EE-A29S-06 14 36096921 36096921 G A RALGAPA1 Nonsense_Mutation p.Q1572* 0.30 TCGA-EE-A29S-06 14 38679776 38679776 G A SSTR1 3'UTR 0.12 TCGA-EE-A29S-06 14 38679800 38679800 G A SSTR1 3'UTR 0.19 TCGA-EE-A29S-06 14 39304827 39304827 C T LINC00639 RNA 0.19 TCGA-EE-A29S-06 14 42356660 42356660 C T LRFN5 Missense_Mutation p.P278S 0.32 tolerated(0.16) benign(0.016) TCGA-EE-A29S-06 14 42360604 42360604 G A LRFN5 Missense_Mutation p.D513N 0.28 deleterious(0.04) benign(0.25) TCGA-EE-A29S-06 14 42360717 42360717 C T LRFN5 Silent p.I550I 0.28 TCGA-EE-A29S-06 14 51379768 51379768 C T PYGL Silent p.R533R 0.26 TCGA-EE-A29S-06 14 51475933 51475933 T C TRIM9 Missense_Mutation p.R391G 0.15 deleterious(0.04) benign(0) TCGA-EE-A29S-06 14 52957604 52957604 C T TXNDC16 Nonsense_Mutation p.W292* 0.17 TCGA-EE-A29S-06 14 53513665 53513665 C T DDHD1 Missense_Mutation p.E842K 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29S-06 14 53513666 53513666 C T DDHD1 Silent p.V841V 0.32 TCGA-EE-A29S-06 14 58063609 58063609 C T SLC35F4 Missense_Mutation p.E3K 0.50 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A29S-06 14 60063332 60063332 A G RTN1 3'UTR 0.31 TCGA-EE-A29S-06 14 67859137 67859137 C T PLEK2 Missense_Mutation p.S226N 0.32 tolerated(0.11) benign(0.001) TCGA-EE-A29S-06 14 68235255 68235255 C T ZFYVE26 Missense_Mutation p.E1878K 0.28 tolerated(0.22) benign(0.019) TCGA-EE-A29S-06 14 70515731 70515731 C T SLC8A3 Silent p.G720G 0.37 TCGA-EE-A29S-06 14 70633847 70633847 C T SLC8A3 Silent p.V431V 0.27 TCGA-EE-A29S-06 14 72202110 72202110 T C SIPA1L1 Splice_Site p.X1729_splice 0.40 TCGA-EE-A29S-06 14 73570176 73570176 A C RBM25 Missense_Mutation p.S382R 0.20 unknown(0) TCGA-EE-A29S-06 14 73726128 73726128 C T PAPLN Silent p.P593P 0.35 TCGA-EE-A29S-06 14 75019658 75019658 C T LTBP2 Missense_Mutation p.D377N 0.43 tolerated(0.06) benign(0.027) TCGA-EE-A29S-06 14 75078537 75078537 C T LTBP2 Silent p.R37R 0.26 TCGA-EE-A29S-06 14 75139618 75139618 G A AREL1 Silent p.F446F 0.40 TCGA-EE-A29S-06 14 75248989 75248989 C T YLPM1 Missense_Mutation p.P748L 0.32 probably_damaging(0.956) TCGA-EE-A29S-06 14 75265468 75265470 ACT CTC YLPM1 Missense_Mutation p.L1157S 0.17 TCGA-EE-A29S-06 14 76965128 76965128 C T ESRRB Intron 0.31 TCGA-EE-A29S-06 14 77292937 77292937 T C C14orf166B Intron 0.44 TCGA-EE-A29S-06 14 81610068 81610068 C T TSHR Missense_Mutation p.P556S 0.30 deleterious(0) probably_damaging(0.933) TCGA-EE-A29S-06 14 81744721 81744721 T C STON2 Missense_Mutation p.T312A 0.30 deleterious(0.02) probably_damaging(0.948) TCGA-EE-A29S-06 14 86088912 86088912 G A FLRT2 Missense_Mutation p.E352K 0.29 deleterious(0.01) benign(0.186) TCGA-EE-A29S-06 14 88477563 88477563 C T GPR65 Silent p.F124F 0.35 TCGA-EE-A29S-06 14 90756620 90756620 G A NRDE2 Missense_Mutation p.S725L 0.33 tolerated(0.07) benign(0.022) TCGA-EE-A29S-06 14 91749677 91749677 G A CCDC88C Silent p.T1542T 0.35 TCGA-EE-A29S-06 14 92150271 92150271 C T CATSPERB Missense_Mutation p.G294E 0.28 deleterious(0) probably_damaging(0.929) TCGA-EE-A29S-06 14 93963593 93963593 C T UNC79 Missense_Mutation p.P110S 0.35 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A29S-06 14 94756337 94756337 G A SERPINA10 Silent p.A198A 0.28 TCGA-EE-A29S-06 14 94915018 94915018 C T SERPINA11 Missense_Mutation p.G32R 0.39 tolerated(0.52) benign(0.065) TCGA-EE-A29S-06 14 95081291 95081291 G A SERPINA3 Silent p.Q171Q 0.31 TCGA-EE-A29S-06 14 95570394 95570394 G A DICER1 Silent p.S1113S 0.27 TCGA-EE-A29S-06 15 101109521 101109521 G A LINS Silent p.F732F 0.30 TCGA-EE-A29S-06 15 102312074 102312074 G A RN7SL209P 3'Flank 0.30 TCGA-EE-A29S-06 15 20495396 20495396 C T CHEK2P2 RNA 0.06 TCGA-EE-A29S-06 15 20657767 20657767 G A HERC2P3 RNA 0.22 TCGA-EE-A29S-06 15 20658997 20658997 G A HERC2P3 RNA 0.24 TCGA-EE-A29S-06 15 22369242 22369242 G A OR4M2 Missense_Mutation p.A223T 0.20 tolerated(0.08) benign(0.009) TCGA-EE-A29S-06 15 22369287 22369287 G C OR4M2 Missense_Mutation p.A238P 0.17 deleterious(0) probably_damaging(0.987) TCGA-EE-A29S-06 15 22383168 22383168 G A OR4N4 Silent p.G232G 0.22 TCGA-EE-A29S-06 15 22999479 22999479 G A CYFIP1 Silent p.G1117G 0.26 TCGA-EE-A29S-06 15 23261767 23261767 A G GOLGA8I Silent p.E293E 0.23 TCGA-EE-A29S-06 15 23689359 23689359 C T GOLGA6L2 Missense_Mutation p.E82K 0.50 benign(0.343) TCGA-EE-A29S-06 15 23811104 23811104 C T MKRN3 Missense_Mutation p.P59S 0.30 tolerated(0.51) benign(0.004) TCGA-EE-A29S-06 15 24923809 24923809 C T NPAP1 Missense_Mutation p.S932L 0.31 tolerated(0.09) benign(0.108) TCGA-EE-A29S-06 15 25423754 25423754 C T SNORD115-6 5'Flank 0.28 TCGA-EE-A29S-06 15 26793000 26793000 G A GABRB3 Silent p.I454I 0.28 TCGA-EE-A29S-06 15 29346358 29346358 C T APBA2 Missense_Mutation p.P91S 0.21 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-EE-A29S-06 15 32450657 32450657 G A CHRNA7 Missense_Mutation p.E244K 0.36 deleterious(0) probably_damaging(0.994) TCGA-EE-A29S-06 15 33603283 33603283 C T RYR3 Nonsense_Mutation p.Q13* 0.30 TCGA-EE-A29S-06 15 35084372 35084372 C T ACTC1 Missense_Mutation p.E243K 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.721) TCGA-EE-A29S-06 15 40594551 40594551 C T PLCB2 Splice_Site p.X125_splice 0.28 TCGA-EE-A29S-06 15 43678511 43678511 C T TUBGCP4 Missense_Mutation p.R333C 0.33 deleterious(0) possibly_damaging(0.797) TCGA-EE-A29S-06 15 43820992 43820992 C T MAP1A Missense_Mutation p.P2441S 0.32 possibly_damaging(0.838) TCGA-EE-A29S-06 15 45962144 45962144 A G SQRDL Missense_Mutation p.I142V 0.33 tolerated(0.87) benign(0.075) TCGA-EE-A29S-06 15 48788334 48788334 C T FBN1 Silent p.K794K 0.18 TCGA-EE-A29S-06 15 50152561 50152561 C T ATP8B4 Missense_Mutation p.G1137S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 15 50212483 50212483 C T ATP8B4 Missense_Mutation p.R628Q 0.30 tolerated(0.19) benign(0.011) TCGA-EE-A29S-06 15 50833252 50833252 G A USP50 Silent p.S218S 0.29 TCGA-EE-A29S-06 15 51350521 51350521 C T TNFAIP8L3 Missense_Mutation p.D146N 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 15 54025336 54025336 G A WDR72 Missense_Mutation p.S4F 0.19 tolerated(0.08) benign(0.02) TCGA-EE-A29S-06 15 54025354 54025354 G A WDR72 5'UTR 0.18 TCGA-EE-A29S-06 15 54307470 54307470 G A UNC13C Silent p.K790K 0.36 TCGA-EE-A29S-06 15 57730914 57730914 C T CGNL1 Silent p.S239S 0.29 TCGA-EE-A29S-06 15 64452372 64452372 T C PPIB Missense_Mutation p.K92E 0.22 deleterious(0.05) benign(0.229) TCGA-EE-A29S-06 15 65621279 65621279 G A IGDCC3 Missense_Mutation p.R805W 0.39 deleterious_low_confidence(0.03) benign(0.001) TCGA-EE-A29S-06 15 71433866 71433866 C T THSD4 5'UTR 0.36 TCGA-EE-A29S-06 15 77769935 77769935 C T HMG20A Silent p.I218I 0.36 TCGA-EE-A29S-06 15 78211617 78211617 C T RP11-114H24.7 Intron 0.23 TCGA-EE-A29S-06 15 78894422 78894422 C T CHRNA3 Missense_Mutation p.D188N 0.36 deleterious(0.03) benign(0.127) TCGA-EE-A29S-06 15 79341870 79341870 C T RASGRF1 Missense_Mutation p.D198N 0.15 tolerated(0.09) benign(0.013) TCGA-EE-A29S-06 15 79341893 79341893 G A RASGRF1 Missense_Mutation p.S190F 0.17 deleterious(0.03) benign(0.193) TCGA-EE-A29S-06 15 81636370 81636370 G A TMC3 Missense_Mutation p.S512F 0.23 deleterious(0) probably_damaging(0.99) TCGA-EE-A29S-06 15 84553894 84553894 C T ADAMTSL3 Silent p.F334F 0.28 TCGA-EE-A29S-06 15 86313740 86313740 G A KLHL25 Intron 0.21 TCGA-EE-A29S-06 15 89403579 89403579 G A ACAN Silent p.E2285E 0.43 TCGA-EE-A29S-06 15 90346521 90346521 G A ANPEP Silent p.T506T 0.26 TCGA-EE-A29S-06 15 92663851 92663851 A T SLCO3A1 Missense_Mutation p.Q389L 0.27 tolerated(0.82) probably_damaging(0.989) TCGA-EE-A29S-06 15 93609264 93609264 G A RGMA Intron 0.38 TCGA-EE-A29S-06 16 11000825 11000825 C T CIITA Silent p.D492D 0.27 TCGA-EE-A29S-06 16 11000826 11000826 C T CIITA Missense_Mutation p.R493C 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A29S-06 16 11001284 11001284 G T CIITA Silent p.L645L 0.26 TCGA-EE-A29S-06 16 113728 113728 G A RHBDF1 Missense_Mutation p.R107C 0.37 deleterious(0) probably_damaging(0.977) TCGA-EE-A29S-06 16 14980667 14980667 C T NOMO1 Missense_Mutation p.S1091F 0.28 deleterious(0) possibly_damaging(0.907) TCGA-EE-A29S-06 16 1537480 1537480 C T PTX4 Silent p.Q206Q 0.16 TCGA-EE-A29S-06 16 1810423 1810423 C T MAPK8IP3 Silent p.V448V 0.31 TCGA-EE-A29S-06 16 19451967 19451967 G A TMC5 Missense_Mutation p.G203R 0.39 deleterious_low_confidence(0.04) benign(0.033) TCGA-EE-A29S-06 16 20481027 20481027 C T ACSM2A Silent p.F194F 0.34 TCGA-EE-A29S-06 16 20975582 20975582 G A DNAH3 Silent p.I3208I 0.23 TCGA-EE-A29S-06 16 21092965 21092965 G A DNAH3 Silent p.F987F 0.38 TCGA-EE-A29S-06 16 21115835 21115835 G A DNAH3 Missense_Mutation p.L775F 0.33 deleterious(0.03) possibly_damaging(0.482) TCGA-EE-A29S-06 16 2333205 2333205 G A ABCA3 Silent p.L1339L 0.31 TCGA-EE-A29S-06 16 2367371 2367371 C T ABCA3 Missense_Mutation p.D342N 0.30 tolerated(0.06) possibly_damaging(0.458) TCGA-EE-A29S-06 16 2376240 2376240 G A ABCA3 Silent p.F30F 0.23 TCGA-EE-A29S-06 16 2522890 2522890 G A NTN3 Missense_Mutation p.A373T 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29S-06 16 2550412 2550412 C T TBC1D24 Silent p.F482F 0.31 TCGA-EE-A29S-06 16 27460569 27460569 C T IL21R Missense_Mutation p.P528S 0.14 tolerated(0.21) probably_damaging(0.992) TCGA-EE-A29S-06 16 27481489 27481489 C T GTF3C1 Missense_Mutation p.R1585K 0.35 tolerated(0.28) benign(0.008) TCGA-EE-A29S-06 16 28515226 28515226 G A IL27 Silent p.S59S 0.48 TCGA-EE-A29S-06 16 28946799 28946799 G A CD19 Nonsense_Mutation p.W290* 0.30 TCGA-EE-A29S-06 16 29115515 29115515 G A CTB-134H23.3 RNA 0.23 TCGA-EE-A29S-06 16 29124379 29124379 G A RP11-426C22.5 5'Flank 0.39 TCGA-EE-A29S-06 16 30776312 30776312 C T RNF40 Missense_Mutation p.R235C 0.28 tolerated(0.07) benign(0.006) TCGA-EE-A29S-06 16 46744694 46744694 C T MYLK3 Missense_Mutation p.G708S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 16 4924614 4924614 C T UBN1 Missense_Mutation p.P735S 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A29S-06 16 49764751 49764751 C T ZNF423 Missense_Mutation p.D70N 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A29S-06 16 50745788 50745788 G C NOD2 Missense_Mutation p.D656H 0.32 deleterious(0.02) benign(0.308) TCGA-EE-A29S-06 16 5139114 5139114 C A FAM86A Nonsense_Mutation p.E296* 0.36 TCGA-EE-A29S-06 16 53529055 53529055 C T AKTIP Missense_Mutation p.G115E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 16 55361271 55361271 G A IRX6 Missense_Mutation p.A123T 0.38 tolerated(0.08) benign(0.022) TCGA-EE-A29S-06 16 55907910 55907910 C T CES5A Missense_Mutation p.G67E 0.19 deleterious(0) probably_damaging(0.99) TCGA-EE-A29S-06 16 56374887 56374887 C T GNAO1 Missense_Mutation p.P289S 0.35 deleterious(0.04) benign(0.117) TCGA-EE-A29S-06 16 61891040 61891040 G A CDH8 Missense_Mutation p.S217F 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 16 67700148 67700148 T G ENKD1 Missense_Mutation p.N36H 0.23 deleterious(0.03) benign(0.347) TCGA-EE-A29S-06 16 67768907 67768907 C T RANBP10 Silent p.G210G 0.30 TCGA-EE-A29S-06 16 68014033 68014033 G C DPEP3 Missense_Mutation p.A109G 0.28 deleterious(0.05) probably_damaging(0.969) TCGA-EE-A29S-06 16 69725733 69725733 T A NFAT5 Missense_Mutation p.S669T 0.26 benign(0.101) TCGA-EE-A29S-06 16 69725734 69725734 C A NFAT5 Nonsense_Mutation p.S669* 0.26 TCGA-EE-A29S-06 16 70891617 70891617 G A HYDIN Missense_Mutation p.L4096F 0.13 probably_damaging(0.934) TCGA-EE-A29S-06 16 70986461 70986461 C T HYDIN Missense_Mutation p.E2132K 0.29 benign(0.164) TCGA-EE-A29S-06 16 70995892 70995892 C T HYDIN Missense_Mutation p.E1980K 0.31 benign(0.006) TCGA-EE-A29S-06 16 72046129 72046129 C T DHODH Missense_Mutation p.P68S 0.34 tolerated(0.1) possibly_damaging(0.626) TCGA-EE-A29S-06 16 74444922 74444922 C T CLEC18B Missense_Mutation p.G332E 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A29S-06 16 77323240 77323240 G A ADAMTS18 Silent p.S1157S 0.39 TCGA-EE-A29S-06 16 81190503 81190503 C T PKD1L2 RNA 0.25 TCGA-EE-A29S-06 16 81298334 81298334 C T BCMO1 Silent p.S187S 0.40 TCGA-EE-A29S-06 16 82132060 82132060 G A HSD17B2 3'UTR 0.38 TCGA-EE-A29S-06 16 84224799 84224799 G A ADAD2 5'UTR 0.23 TCGA-EE-A29S-06 16 84256623 84256623 C T KCNG4 Missense_Mutation p.E254K 0.24 tolerated(0.07) probably_damaging(0.99) TCGA-EE-A29S-06 16 84600642 84600642 G A COTL1 Intron 0.37 TCGA-EE-A29S-06 16 86575308 86575308 A G MTHFSD Missense_Mutation p.F226L 0.23 tolerated(0.09) benign(0.001) TCGA-EE-A29S-06 16 87445350 87445350 T A ZCCHC14 Missense_Mutation p.S856C 0.47 deleterious(0.05) unknown(0) TCGA-EE-A29S-06 16 8890250 8890250 G A TMEM186 Silent p.T67T 0.40 TCGA-EE-A29S-06 16 89167169 89167169 G A ACSF3 Missense_Mutation p.R27K 0.42 tolerated_low_confidence(0.58) benign(0.004) TCGA-EE-A29S-06 16 89761730 89761730 C T CDK10 Missense_Mutation p.S321F 0.34 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A29S-06 16 89924818 89924818 C T SPIRE2 Missense_Mutation p.S392L 0.31 tolerated(0.14) possibly_damaging(0.897) TCGA-EE-A29S-06 16 9857612 9857612 C T GRIN2A Silent p.G1263G 0.38 TCGA-EE-A29S-06 17 10448744 10448744 C T MYH2 Missense_Mutation p.A142T 0.56 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A29S-06 17 11671833 11671833 C T DNAH9 Missense_Mutation p.P2412S 0.53 probably_damaging(0.978) TCGA-EE-A29S-06 17 11686984 11686984 C T DNAH9 Silent p.S2580S 0.52 TCGA-EE-A29S-06 17 11687036 11687036 G A DNAH9 Missense_Mutation p.G2598S 0.62 probably_damaging(0.998) TCGA-EE-A29S-06 17 26603749 26603749 C T AC061975.8 5'Flank 0.25 TCGA-EE-A29S-06 17 27244350 27244350 G A PHF12 Missense_Mutation p.P363S 0.28 deleterious(0.04) benign(0.24) TCGA-EE-A29S-06 17 28750031 28750031 C T CPD Silent p.V549V 0.29 TCGA-EE-A29S-06 17 28817161 28817161 C T GOSR1 Silent p.F122F 0.27 TCGA-EE-A29S-06 17 2995533 2995533 C T OR1D2 Missense_Mutation p.G253E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 17 3118961 3118961 G A OR1A1 Missense_Mutation p.G16E 0.55 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29S-06 17 3195211 3195211 G A OR3A1 Silent p.I222I 0.44 TCGA-EE-A29S-06 17 33513668 33513668 G A UNC45B 3'UTR 0.39 TCGA-EE-A29S-06 17 35445882 35445882 T A ACACA Missense_Mutation p.Q2340L 0.34 tolerated(0.09) probably_damaging(0.974) TCGA-EE-A29S-06 17 35445884 35445884 C T ACACA Silent p.K2339K 0.29 TCGA-EE-A29S-06 17 36059181 36059181 T C HNF1B Silent p.E518E 0.35 TCGA-EE-A29S-06 17 36093701 36093701 C T HNF1B Missense_Mutation p.D220N 0.30 tolerated(0.15) benign(0.003) TCGA-EE-A29S-06 17 38175650 38175650 G A MED24 3'UTR 0.29 TCGA-EE-A29S-06 17 38978755 38978755 C T KRT10 Missense_Mutation p.G28E 0.27 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A29S-06 17 39122818 39122818 C T KRT39 Silent p.K97K 0.26 TCGA-EE-A29S-06 17 39254246 39254246 G A KRTAP4-8 Nonsense_Mutation p.Q31* 0.16 TCGA-EE-A29S-06 17 39594367 39594367 G A KRT38 Missense_Mutation p.L407F 0.33 deleterious(0.01) possibly_damaging(0.889) TCGA-EE-A29S-06 17 39594368 39594368 G A KRT38 Silent p.N406N 0.33 TCGA-EE-A29S-06 17 39594532 39594532 C T KRT38 Missense_Mutation p.E352K 0.24 deleterious(0.03) benign(0.098) TCGA-EE-A29S-06 17 39680764 39680764 C T KRT19 Missense_Mutation p.G230E 0.29 deleterious(0) probably_damaging(0.958) TCGA-EE-A29S-06 17 40652861 40652861 C T ATP6V0A1 Missense_Mutation p.P613S 0.23 deleterious(0) probably_damaging(0.965) TCGA-EE-A29S-06 17 41152038 41152038 T A RPL27 Missense_Mutation p.M57K 0.40 deleterious(0.03) benign(0.02) TCGA-EE-A29S-06 17 42266947 42266947 C T TMUB2 Missense_Mutation p.A198V 0.36 tolerated(0.5) benign(0.003) TCGA-EE-A29S-06 17 43552900 43552900 G A PLEKHM1 Silent p.F163F 0.20 TCGA-EE-A29S-06 17 44632815 44632815 C T ARL17A 3'UTR 0.10 TCGA-EE-A29S-06 17 48738380 48738380 G A ABCC3 Silent p.K301K 0.23 TCGA-EE-A29S-06 17 51902354 51902354 G A KIF2B Missense_Mutation p.E654K 0.40 tolerated(0.12) possibly_damaging(0.621) TCGA-EE-A29S-06 17 54990975 54990975 G A TRIM25 Silent p.S125S 0.32 TCGA-EE-A29S-06 17 54990976 54990976 G A TRIM25 Missense_Mutation p.S125F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 17 56272381 56272381 C T EPX Silent p.D217D 0.26 TCGA-EE-A29S-06 17 56598977 56598977 T G SEPT4 Missense_Mutation p.K331Q 0.38 tolerated(0.34) benign(0.01) TCGA-EE-A29S-06 17 56599381 56599381 G A SEPT4 Silent p.I263I 0.27 TCGA-EE-A29S-06 17 60757633 60757633 G A MRC2 Missense_Mutation p.D801N 0.31 tolerated(0.22) benign(0.132) TCGA-EE-A29S-06 17 60757634 60757634 A C MRC2 Missense_Mutation p.D801A 0.30 deleterious(0.03) benign(0.347) TCGA-EE-A29S-06 17 61902915 61902915 G A FTSJ3 Silent p.V127V 0.29 TCGA-EE-A29S-06 17 61988101 61988101 G A CSHL1 Intron 0.36 TCGA-EE-A29S-06 17 62817941 62817941 G A RNU7-115P 3'Flank 0.33 TCGA-EE-A29S-06 17 62817942 62817942 G A RNU7-115P 3'Flank 0.33 TCGA-EE-A29S-06 17 66902259 66902259 T C ABCA8 Missense_Mutation p.N735S 0.40 tolerated(0.31) benign(0.034) TCGA-EE-A29S-06 17 67092928 67092928 G A ABCA6 Silent p.S1045S 0.32 TCGA-EE-A29S-06 17 67114069 67114069 C T ABCA6 Missense_Mutation p.G489R 0.22 tolerated(0.1) benign(0.062) TCGA-EE-A29S-06 17 67149478 67149478 G A ABCA10 Silent p.T1368T 0.37 TCGA-EE-A29S-06 17 67149479 67149479 G A ABCA10 Missense_Mutation p.T1368I 0.36 tolerated(0.05) possibly_damaging(0.768) TCGA-EE-A29S-06 17 7330779 7330779 C T C17orf74 Missense_Mutation p.P490L 0.42 deleterious(0.01) probably_damaging(0.958) TCGA-EE-A29S-06 17 74005370 74005370 C T EVPL Missense_Mutation p.A1306T 0.27 tolerated(0.06) benign(0.176) TCGA-EE-A29S-06 17 74005371 74005371 C T EVPL Silent p.R1305R 0.27 TCGA-EE-A29S-06 17 74574885 74574885 A G ST6GALNAC2 Missense_Mutation p.F47L 0.32 benign(0.001) TCGA-EE-A29S-06 17 7479909 7479909 C T EIF4A1 Missense_Mutation p.T138I 0.41 deleterious(0.01) benign(0.185) TCGA-EE-A29S-06 17 7479910 7479910 C T EIF4A1 Silent p.T138T 0.42 TCGA-EE-A29S-06 17 76134129 76134129 G A TMC8 Missense_Mutation p.E465K 0.27 deleterious(0.02) benign(0.049) TCGA-EE-A29S-06 17 76481835 76481835 G A DNAH17 Missense_Mutation p.S2413F 0.27 benign(0.057) TCGA-EE-A29S-06 17 76557915 76557915 C T DNAH17 Missense_Mutation p.G573R 0.26 benign(0.284) TCGA-EE-A29S-06 17 7754526 7754526 C T KDM6B Silent p.S1287S 0.59 TCGA-EE-A29S-06 17 78320345 78320345 C T RNF213 Missense_Mutation p.P2737L 0.24 possibly_damaging(0.894) TCGA-EE-A29S-06 17 79478568 79478568 C T ACTG1 Missense_Mutation p.G150S 0.26 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-EE-A29S-06 17 79880485 79880485 G A MAFG Missense_Mutation p.S162L 0.28 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A29S-06 17 8638875 8638875 G A CCDC42 Missense_Mutation p.H183Y 0.54 deleterious(0.03) benign(0.062) TCGA-EE-A29S-06 17 912972 912972 G A ABR Silent p.S763S 0.58 TCGA-EE-A29S-06 17 9674940 9674940 C T DHRS7C Silent p.R268R 0.47 TCGA-EE-A29S-06 18 13884926 13884926 G A MC2R Silent p.L198L 0.40 TCGA-EE-A29S-06 18 14848771 14848771 G A ANKRD30B Missense_Mutation p.E961K 0.45 tolerated(0.18) probably_damaging(0.953) TCGA-EE-A29S-06 18 21148891 21148891 A T NPC1 Missense_Mutation p.F120Y 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A29S-06 18 21338393 21338393 G A LAMA3 Silent p.G327G 0.22 TCGA-EE-A29S-06 18 21469986 21469986 G A LAMA3 Missense_Mutation p.G1772E 0.32 probably_damaging(1) TCGA-EE-A29S-06 18 21494463 21494463 G A LAMA3 Silent p.V2473V 0.39 TCGA-EE-A29S-06 18 22804660 22804660 G A ZNF521 Silent p.F1074F 0.32 TCGA-EE-A29S-06 18 28649056 28649056 G A DSC2 Missense_Mutation p.T771I 0.27 deleterious(0.02) benign(0.272) TCGA-EE-A29S-06 18 28991327 28991327 G A DSG4 Silent p.R776R 0.38 TCGA-EE-A29S-06 18 29178641 29178641 G A TTR 3'UTR 0.42 TCGA-EE-A29S-06 18 29848122 29848122 G A GAREM Silent p.Y781Y 0.20 TCGA-EE-A29S-06 18 30350241 30350241 C T KLHL14 Missense_Mutation p.G105E 0.43 tolerated(0.12) probably_damaging(0.994) TCGA-EE-A29S-06 18 31324212 31324212 G A ASXL3 Missense_Mutation p.R1467Q 0.37 probably_damaging(0.997) TCGA-EE-A29S-06 18 31599282 31599282 C T NOL4 Silent p.K352K 0.30 TCGA-EE-A29S-06 18 3452062 3452062 C T TGIF1 Missense_Mutation p.P29S 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29S-06 18 357415 357415 T G COLEC12 Missense_Mutation p.I56L 0.32 tolerated(0.05) benign(0.141) TCGA-EE-A29S-06 18 42643132 42643132 C T SETBP1 Silent p.I1420I 0.32 TCGA-EE-A29S-06 18 43204597 43204597 C T SLC14A2 Intron 0.18 TCGA-EE-A29S-06 18 44013377 44013377 C T RNF165 Missense_Mutation p.P96S 0.36 tolerated(0.08) possibly_damaging(0.898) TCGA-EE-A29S-06 18 48190830 48190830 G A MAPK4 Missense_Mutation p.D168N 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A29S-06 18 48255601 48255601 G A MAPK4 Missense_Mutation p.D381N 0.20 deleterious_low_confidence(0.01) benign(0.34) TCGA-EE-A29S-06 18 48255649 48255649 C T MAPK4 Missense_Mutation p.P397S 0.17 deleterious_low_confidence(0) benign(0.004) TCGA-EE-A29S-06 18 48256132 48256132 G A MAPK4 Missense_Mutation p.D558N 0.24 tolerated_low_confidence(0.1) benign(0.105) TCGA-EE-A29S-06 18 50278509 50278509 C T DCC Silent p.L59L 0.30 TCGA-EE-A29S-06 18 50866120 50866120 G A DCC Silent p.V734V 0.28 TCGA-EE-A29S-06 18 50961516 50961516 C T DCC Missense_Mutation p.R1056C 0.28 deleterious(0.02) possibly_damaging(0.856) TCGA-EE-A29S-06 18 52258483 52258483 G A DYNAP Nonsense_Mutation p.W16* 0.33 TCGA-EE-A29S-06 18 53128276 53128276 G A TCF4 Missense_Mutation p.P195L 0.34 deleterious(0.01) benign(0.004) TCGA-EE-A29S-06 18 5410563 5410563 A G EPB41L3 Splice_Site p.X707_splice 0.27 TCGA-EE-A29S-06 18 54444026 54444026 C T WDR7 Silent p.V954V 0.23 TCGA-EE-A29S-06 18 55020046 55020046 C T ST8SIA3 5'UTR 0.43 TCGA-EE-A29S-06 18 55027344 55027344 G A ST8SIA3 Missense_Mutation p.D327N 0.30 benign(0.011) TCGA-EE-A29S-06 18 56202578 56202578 G A ALPK2 Missense_Mutation p.P1614L 0.49 tolerated(0.47) benign(0.012) TCGA-EE-A29S-06 18 56202579 56202579 G A ALPK2 Missense_Mutation p.P1614S 0.50 deleterious(0.02) possibly_damaging(0.489) TCGA-EE-A29S-06 18 61166456 61166456 A G SERPINB5 Missense_Mutation p.K224R 0.45 deleterious(0.04) possibly_damaging(0.871) TCGA-EE-A29S-06 18 61309021 61309021 G A SERPINB4 Silent p.F108F 0.31 TCGA-EE-A29S-06 18 61324626 61324626 G A SERPINB3 Missense_Mutation p.P164S 0.27 tolerated(0.11) possibly_damaging(0.599) TCGA-EE-A29S-06 18 61325751 61325751 C T SERPINB3 Silent p.T155T 0.54 TCGA-EE-A29S-06 18 66504048 66504048 C T CCDC102B Silent p.F16F 0.38 TCGA-EE-A29S-06 18 6958515 6958515 G T LAMA1 Nonsense_Mutation p.S2642* 0.20 TCGA-EE-A29S-06 18 72344075 72344075 C T ZNF407 Missense_Mutation p.T367I 0.36 tolerated(0.51) benign(0.011) TCGA-EE-A29S-06 18 72913660 72913660 G A ZADH2 Missense_Mutation p.S282L 0.39 tolerated(0.22) benign(0.042) TCGA-EE-A29S-06 18 76753362 76753362 C T SALL3 Silent p.F457F 0.26 TCGA-EE-A29S-06 18 908329 908329 G A ADCYAP1 Silent p.G102G 0.33 TCGA-EE-A29S-06 19 10112520 10112520 G A COL5A3 Missense_Mutation p.P296L 0.23 unknown(0) TCGA-EE-A29S-06 19 11097640 11097640 G A SMARCA4 Missense_Mutation p.G274S 0.25 probably_damaging(0.986) TCGA-EE-A29S-06 19 12297654 12297654 C T ZNF136 Missense_Mutation p.S154F 0.24 tolerated(0.19) probably_damaging(0.98) TCGA-EE-A29S-06 19 12759129 12759129 G A MAN2B1 Missense_Mutation p.H842Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 19 13409729 13409729 C T CACNA1A Silent p.R906R 0.30 TCGA-EE-A29S-06 19 14139075 14139075 G A RLN3 Nonsense_Mutation p.W20* 0.35 TCGA-EE-A29S-06 19 14710888 14710888 G A CLEC17A Missense_Mutation p.G263D 0.34 tolerated(0.29) benign(0.077) TCGA-EE-A29S-06 19 14758104 14758104 C T EMR3 Missense_Mutation p.M257I 0.31 tolerated(0.19) benign(0.003) TCGA-EE-A29S-06 19 15166261 15166261 G A CASP14 Missense_Mutation p.D181N 0.45 tolerated(0.12) possibly_damaging(0.791) TCGA-EE-A29S-06 19 15300169 15300169 A G NOTCH3 Silent p.N369N 0.32 TCGA-EE-A29S-06 19 15760825 15760825 C T CYP4F3 Silent p.T250T 0.36 TCGA-EE-A29S-06 19 15806746 15806746 G A CYP4F12 Nonsense_Mutation p.W372* 0.34 TCGA-EE-A29S-06 19 15989613 15989613 C T CYP4F2 Missense_Mutation p.G511R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 19 16034738 16034738 C T CYP4F11 Missense_Mutation p.D268N 0.34 deleterious(0.04) benign(0.182) TCGA-EE-A29S-06 19 16974519 16974519 C T SIN3B Missense_Mutation p.P464L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 19 17741504 17741504 C T UNC13A Missense_Mutation p.D1162N 0.26 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A29S-06 19 17937434 17937434 G A JAK3 3'UTR 0.22 TCGA-EE-A29S-06 19 18971672 18971672 T C UPF1 Silent p.L780L 0.21 TCGA-EE-A29S-06 19 20228868 20228868 G A ZNF90 Missense_Mutation p.G169R 0.37 tolerated(0.11) benign(0.261) TCGA-EE-A29S-06 19 20228869 20228869 G A ZNF90 Missense_Mutation p.G169E 0.37 tolerated(0.22) benign(0.123) TCGA-EE-A29S-06 19 20236031 20236031 A T CTC-260E6.2 RNA 0.21 TCGA-EE-A29S-06 19 20807665 20807665 G A ZNF626 Missense_Mutation p.P340S 0.33 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A29S-06 19 21990825 21990825 G A ZNF43 Missense_Mutation p.H672Y 0.36 deleterious(0.03) probably_damaging(0.966) TCGA-EE-A29S-06 19 21991416 21991416 T G ZNF43 Missense_Mutation p.I475L 0.38 deleterious(0.02) benign(0.439) TCGA-EE-A29S-06 19 22379597 22379597 G A ZNF676 5'UTR 0.38 TCGA-EE-A29S-06 19 22941484 22941484 G A ZNF99 Silent p.S409S 0.28 TCGA-EE-A29S-06 19 2328413 2328413 G A LSM7 Missense_Mutation p.R24W 0.20 deleterious(0.02) benign(0.126) TCGA-EE-A29S-06 19 23329182 23329182 C T ZNF730 Missense_Mutation p.H446Y 0.26 deleterious(0.02) probably_damaging(0.92) TCGA-EE-A29S-06 19 2353125 2353125 G A LLfos-48D6.1 Intron 0.38 TCGA-EE-A29S-06 19 3155944 3155944 C T GNA15 Silent p.N246N 0.21 TCGA-EE-A29S-06 19 33703436 33703436 A C SLC7A10 Silent p.L206L 0.58 TCGA-EE-A29S-06 19 36341860 36341860 C T NPHS1 Intron 0.39 TCGA-EE-A29S-06 19 3752968 3752968 G A APBA3 Silent p.A344A 0.20 TCGA-EE-A29S-06 19 3752969 3752969 G A APBA3 Missense_Mutation p.A344V 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29S-06 19 37644347 37644347 G A ZNF585A Missense_Mutation p.L97F 0.41 deleterious(0) benign(0.157) TCGA-EE-A29S-06 19 39038895 39038895 C T RYR1 Silent p.I4039I 0.54 TCGA-EE-A29S-06 19 39575909 39575909 C T PAPL 5'UTR 0.44 TCGA-EE-A29S-06 19 40380176 40380176 G A FCGBP Silent p.I3713I 0.35 TCGA-EE-A29S-06 19 40732303 40732303 C T CNTD2 Silent p.G82G 0.45 TCGA-EE-A29S-06 19 41062138 41062138 G A SPTBN4 Missense_Mutation p.E1745K 0.19 deleterious(0) probably_damaging(0.928) TCGA-EE-A29S-06 19 43406495 43406495 C T PSG6 3'Flank 0.39 TCGA-EE-A29S-06 19 43519301 43519301 C T PSG11 Missense_Mutation p.E311K 0.54 tolerated(0.11) benign(0.209) TCGA-EE-A29S-06 19 43683253 43683253 C T PSG5 Intron 0.48 TCGA-EE-A29S-06 19 43683254 43683254 C T PSG5 Intron 0.48 TCGA-EE-A29S-06 19 43762487 43762487 C T PSG9 Silent p.G370G 0.55 TCGA-EE-A29S-06 19 4428807 4428807 C T CHAF1A Silent p.F508F 0.37 TCGA-EE-A29S-06 19 4445372 4445372 C T UBXN6 3'UTR 0.31 TCGA-EE-A29S-06 19 46627208 46627208 C T IGFL3 Silent p.V95V 0.45 TCGA-EE-A29S-06 19 48343182 48343182 G A CRX Silent p.L286L 0.47 TCGA-EE-A29S-06 19 48556362 48556362 A G PLA2G4C Missense_Mutation p.L501P 0.59 deleterious(0.03) benign(0.214) TCGA-EE-A29S-06 19 48946532 48946532 G A GRIN2D Missense_Mutation p.D1117N 0.64 tolerated_low_confidence(0.05) unknown(0) TCGA-EE-A29S-06 19 48973726 48973726 G A CTC-273B12.7 Missense_Mutation p.E30K 0.60 deleterious(0.02) benign(0.094) TCGA-EE-A29S-06 19 49920433 49920433 T C CCDC155 Missense_Mutation p.L486P 0.62 tolerated_low_confidence(0.16) benign(0.031) TCGA-EE-A29S-06 19 51633215 51633215 C T SIGLEC9 Intron 0.46 TCGA-EE-A29S-06 19 52002792 52002792 G A SIGLEC12 Silent p.L329L 0.46 TCGA-EE-A29S-06 19 52004616 52004616 C T SIGLEC12 Silent p.E124E 0.47 TCGA-EE-A29S-06 19 52794150 52794150 C A ZNF766 Missense_Mutation p.S369Y 0.30 tolerated(1) possibly_damaging(0.855) TCGA-EE-A29S-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.42 TCGA-EE-A29S-06 19 54395022 54395022 G A PRKCG Silent p.T208T 0.53 TCGA-EE-A29S-06 19 5455958 5455958 C T ZNRF4 Silent p.N152N 0.29 TCGA-EE-A29S-06 19 5455959 5455959 C T ZNRF4 Missense_Mutation p.R153C 0.27 tolerated(0.13) benign(0.011) TCGA-EE-A29S-06 19 54849947 54849947 G A LILRA4 Silent p.N25N 0.59 TCGA-EE-A29S-06 19 5590342 5590343 - C SAFB2 Frame_Shift_Ins p.Y825Lfs*9 0.27 TCGA-EE-A29S-06 19 56572901 56572901 G A NLRP5 3'UTR 0.58 TCGA-EE-A29S-06 19 57036478 57036478 T A ZNF471 Missense_Mutation p.C348S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 19 57133360 57133360 C T ZNF71 Silent p.I235I 0.37 TCGA-EE-A29S-06 19 6475371 6475371 C T DENND1C Missense_Mutation p.A323T 0.25 tolerated(0.54) benign(0.014) TCGA-EE-A29S-06 19 6696664 6696664 C T C3 Missense_Mutation p.G935R 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A29S-06 19 6760963 6760963 G A SH2D3A Silent p.F35F 0.25 TCGA-EE-A29S-06 19 8668757 8668757 G A ADAMTS10 Silent p.I149I 0.25 TCGA-EE-A29S-06 19 8976814 8976814 G A MUC16 Silent p.S14084S 0.20 TCGA-EE-A29S-06 19 8999411 8999411 C T MUC16 Silent p.R13588R 0.30 TCGA-EE-A29S-06 19 9058382 9058382 C T MUC16 Silent p.G9688G 0.16 TCGA-EE-A29S-06 19 9067233 9067233 C T MUC16 Missense_Mutation p.R6738Q 0.46 unknown(0) TCGA-EE-A29S-06 19 9068878 9068878 C T MUC16 Missense_Mutation p.D6190N 0.43 unknown(0) TCGA-EE-A29S-06 19 9083313 9083313 C T MUC16 Silent p.T2834T 0.21 TCGA-EE-A29S-06 19 9088160 9088160 G A MUC16 Missense_Mutation p.P1219S 0.48 unknown(0) TCGA-EE-A29S-06 19 9296743 9296743 G A OR7D2 Missense_Mutation p.D96N 0.24 deleterious_low_confidence(0.03) benign(0.004) TCGA-EE-A29S-06 19 9960179 9960179 G A PIN1 3'UTR 0.26 TCGA-EE-A29S-06 1 100905546 100905546 A G CDC14A Missense_Mutation p.I150V 0.32 tolerated(0.5) benign(0.048) TCGA-EE-A29S-06 1 111983752 111983752 C T WDR77 3'UTR 0.40 TCGA-EE-A29S-06 1 112998998 112998998 C T CTTNBP2NL Missense_Mutation p.T295I 0.29 tolerated(0.25) benign(0.018) TCGA-EE-A29S-06 1 114308972 114308972 C G RSBN1 Missense_Mutation p.R680T 0.28 deleterious(0) probably_damaging(0.99) TCGA-EE-A29S-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.36 deleterious(0) benign(0.109) TCGA-EE-A29S-06 1 115527431 115527431 G A SYCP1 Missense_Mutation p.R882K 0.32 tolerated(0.14) benign(0.037) TCGA-EE-A29S-06 1 115829023 115829023 C T NGF Missense_Mutation p.E132K 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 1 117617695 117617695 C T TTF2 Silent p.F163F 0.21 TCGA-EE-A29S-06 1 118571014 118571014 C T SPAG17 Missense_Mutation p.E1205K 0.29 deleterious(0.01) possibly_damaging(0.705) TCGA-EE-A29S-06 1 119936448 119936448 G A HAO2 Silent p.Q347Q 0.37 TCGA-EE-A29S-06 1 120307181 120307181 G A HMGCS2 Missense_Mutation p.A58V 0.32 deleterious(0) possibly_damaging(0.809) TCGA-EE-A29S-06 1 12144524 12144524 C T TNFRSF8 Nonsense_Mutation p.R23* 0.25 TCGA-EE-A29S-06 1 1275529 1275529 G A DVL1 Silent p.I266I 0.27 TCGA-EE-A29S-06 1 12815748 12815748 G A C1orf158 Silent p.G70G 0.32 TCGA-EE-A29S-06 1 12854245 12854245 G A PRAMEF1 Missense_Mutation p.E157K 0.22 tolerated(0.34) probably_damaging(0.941) TCGA-EE-A29S-06 1 13719030 13719030 G T PRAMEF17 3'UTR 0.44 TCGA-EE-A29S-06 1 142713608 142713608 C T RP11-417J8.6 RNA 0.19 TCGA-EE-A29S-06 1 144854629 144854629 C T PDE4DIP Missense_Mutation p.E2281K 0.10 tolerated(0.45) possibly_damaging(0.547) TCGA-EE-A29S-06 1 144931603 144931603 C G PDE4DIP Intron 0.09 TCGA-EE-A29S-06 1 148932876 148932876 G A RP11-14N7.2 RNA 0.05 TCGA-EE-A29S-06 1 149884876 149884876 C A SV2A Missense_Mutation p.G173C 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 150526211 150526211 C T ADAMTSL4 Silent p.P248P 0.28 TCGA-EE-A29S-06 1 150724357 150724357 C T CTSS Missense_Mutation p.G176E 0.23 deleterious(0.02) benign(0.033) TCGA-EE-A29S-06 1 150830871 150830871 G A ARNT Nonsense_Mutation p.Q31* 0.26 TCGA-EE-A29S-06 1 150938687 150938687 T C CERS2 Silent p.A360A 0.22 TCGA-EE-A29S-06 1 152058891 152058891 C T TCHHL1 Missense_Mutation p.D423N 0.23 tolerated(0.09) benign(0.17) TCGA-EE-A29S-06 1 152081397 152081397 G A TCHH Silent p.F1432F 0.22 TCGA-EE-A29S-06 1 152129199 152129199 C T RPTN Missense_Mutation p.E126K 0.28 deleterious(0.01) possibly_damaging(0.449) TCGA-EE-A29S-06 1 152192045 152192045 C T HRNR Missense_Mutation p.S687N 0.22 unknown(0) TCGA-EE-A29S-06 1 152192312 152192312 C T HRNR Missense_Mutation p.G598D 0.25 unknown(0) TCGA-EE-A29S-06 1 152325619 152325619 C T FLG2 Missense_Mutation p.G1548E 0.25 possibly_damaging(0.878) TCGA-EE-A29S-06 1 152329660 152329660 G A FLG2 Missense_Mutation p.S201F 0.23 unknown(0) TCGA-EE-A29S-06 1 152484251 152484251 C T LCE5A Nonsense_Mutation p.R81* 0.21 TCGA-EE-A29S-06 1 152552378 152552378 G A LCE3D Missense_Mutation p.P12L 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29S-06 1 152636901 152636901 G A LCE2D Missense_Mutation p.G107E 0.24 tolerated_low_confidence(0.23) unknown(0) TCGA-EE-A29S-06 1 152681538 152681538 G A LCE4A 5'UTR 0.25 TCGA-EE-A29S-06 1 153745791 153745791 T G INTS3 3'UTR 0.24 TCGA-EE-A29S-06 1 153906070 153906070 G A DENND4B Silent p.A1073A 0.11 TCGA-EE-A29S-06 1 154125286 154125286 G A NUP210L Missense_Mutation p.S89F 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 1 154401774 154401774 G A IL6R Missense_Mutation p.R63K 0.12 tolerated(0.51) benign(0.006) TCGA-EE-A29S-06 1 155298061 155298061 C T RUSC1 Silent p.T845T 0.26 TCGA-EE-A29S-06 1 156013888 156013888 G A UBQLN4 Missense_Mutation p.P343S 0.11 tolerated(0.58) benign(0.054) TCGA-EE-A29S-06 1 156376906 156376906 G A C1orf61 Missense_Mutation p.S130F 0.29 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A29S-06 1 156555606 156555606 G A TTC24 Missense_Mutation p.A520T 0.24 tolerated_low_confidence(0.64) benign(0.016) TCGA-EE-A29S-06 1 156811546 156811546 G A INSRR Silent p.Y1146Y 0.27 TCGA-EE-A29S-06 1 157740218 157740218 T A FCRL2 Silent p.I97I 0.25 TCGA-EE-A29S-06 1 158225007 158225007 C T CD1A Silent p.I64I 0.20 TCGA-EE-A29S-06 1 158300601 158300601 C T CD1B Missense_Mutation p.D105N 0.26 deleterious(0.03) benign(0.001) TCGA-EE-A29S-06 1 158389728 158389728 G A OR10K2 Missense_Mutation p.S310F 0.22 tolerated(0.05) benign(0.003) TCGA-EE-A29S-06 1 158577042 158577042 C T OR10Z1 Nonsense_Mutation p.Q272* 0.27 TCGA-EE-A29S-06 1 158589991 158589991 C T SPTA1 Missense_Mutation p.R2129K 0.23 tolerated(0.2) benign(0.015) TCGA-EE-A29S-06 1 158687447 158687447 G A OR6K3 Silent p.F153F 0.19 TCGA-EE-A29S-06 1 158908943 158908943 C T PYHIN1 Missense_Mutation p.S162F 0.26 deleterious(0.01) possibly_damaging(0.635) TCGA-EE-A29S-06 1 159683504 159683504 C T CRP Silent p.G162G 0.24 TCGA-EE-A29S-06 1 160518106 160518106 C T CD84 Silent p.G326G 0.16 TCGA-EE-A29S-06 1 160654867 160654867 C T CD48 Silent p.K65K 0.22 TCGA-EE-A29S-06 1 161967671 161967671 G A OLFML2B Missense_Mutation p.T473I 0.24 tolerated(0.19) benign(0.001) TCGA-EE-A29S-06 1 162313648 162313648 G A NOS1AP Silent p.R159R 0.18 TCGA-EE-A29S-06 1 163138122 163138122 G A RGS5 Silent p.L27L 0.27 TCGA-EE-A29S-06 1 16525148 16525148 G A ARHGEF19 Silent p.L781L 0.31 TCGA-EE-A29S-06 1 166905847 166905847 G A ILDR2 Silent p.S228S 0.08 TCGA-EE-A29S-06 1 166973437 166973437 C T MAEL Missense_Mutation p.P182S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 167088675 167088675 C T DUSP27 Silent p.F209F 0.18 TCGA-EE-A29S-06 1 167097088 167097088 C T DUSP27 Missense_Mutation p.P907L 0.34 deleterious(0.03) possibly_damaging(0.504) TCGA-EE-A29S-06 1 167097203 167097203 G A DUSP27 Silent p.E945E 0.26 TCGA-EE-A29S-06 1 167511385 167511385 G A CREG1 3'UTR 0.26 TCGA-EE-A29S-06 1 168211762 168211762 C T SFT2D2 Missense_Mutation p.A156V 0.50 deleterious(0.01) benign(0.09) TCGA-EE-A29S-06 1 168670317 168670317 C T DPT Missense_Mutation p.M159I 0.18 tolerated(0.29) benign(0.016) TCGA-EE-A29S-06 1 16907369 16907369 G A NBPF1 Missense_Mutation p.P488S 0.06 tolerated(0.31) probably_damaging(0.998) TCGA-EE-A29S-06 1 169199982 169199982 G A NME7 Nonsense_Mutation p.R322* 0.35 TCGA-EE-A29S-06 1 169364365 169364365 C T CCDC181 Missense_Mutation p.A483T 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.19 deleterious(0.02) benign(0.036) TCGA-EE-A29S-06 1 169701903 169701903 C T SELE Missense_Mutation p.E92K 0.26 tolerated(0.27) benign(0.005) TCGA-EE-A29S-06 1 171080040 171080040 C T FMO3 Silent p.L243L 0.24 TCGA-EE-A29S-06 1 173567107 173567107 G A SLC9C2 Missense_Mutation p.P98L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 173596212 173596212 C T ANKRD45 Missense_Mutation p.E195K 0.25 deleterious(0.01) possibly_damaging(0.758) TCGA-EE-A29S-06 1 173952619 173952619 G C RC3H1 Missense_Mutation p.Q177E 0.20 deleterious(0) probably_damaging(0.986) TCGA-EE-A29S-06 1 175048543 175048543 G A TNN Missense_Mutation p.E162K 0.16 deleterious(0.02) benign(0.009) TCGA-EE-A29S-06 1 175092667 175092667 G A TNN Missense_Mutation p.E928K 0.19 tolerated(0.05) probably_damaging(0.977) TCGA-EE-A29S-06 1 175328779 175328779 C T TNR Silent p.E981E 0.24 TCGA-EE-A29S-06 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.28 tolerated(0.12) benign(0.376) TCGA-EE-A29S-06 1 175372436 175372436 C T TNR Silent p.G272G 0.21 TCGA-EE-A29S-06 1 17597374 17597374 G A PADI3 Missense_Mutation p.D278N 0.40 tolerated(0.3) benign(0.008) TCGA-EE-A29S-06 1 176833426 176833426 C T ASTN1 Silent p.E1293E 0.22 TCGA-EE-A29S-06 1 176853571 176853571 C T ASTN1 Missense_Mutation p.E1044K 0.33 tolerated(0.37) benign(0.033) TCGA-EE-A29S-06 1 17690098 17690098 G A PADI4 Missense_Mutation p.E614K 0.41 tolerated(0.06) benign(0.2) TCGA-EE-A29S-06 1 177250346 177250346 G A BRINP2 Missense_Mutation p.M678I 0.25 tolerated(0.16) probably_damaging(0.914) TCGA-EE-A29S-06 1 179533877 179533877 G A NPHS2 Missense_Mutation p.S109F 0.23 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A29S-06 1 179631385 179631385 G A TDRD5 Silent p.K823K 0.24 TCGA-EE-A29S-06 1 179660029 179660029 C T TDRD5 Missense_Mutation p.S1020F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 180243421 180243421 G A LHX4 Missense_Mutation p.G294R 0.25 tolerated(0.69) benign(0.258) TCGA-EE-A29S-06 1 181689945 181689945 C T CACNA1E Missense_Mutation p.S637L 0.14 tolerated(0.09) possibly_damaging(0.651) TCGA-EE-A29S-06 1 181724502 181724502 G A CACNA1E Missense_Mutation p.D1320N 0.22 deleterious(0.01) possibly_damaging(0.53) TCGA-EE-A29S-06 1 181725216 181725216 G A CACNA1E Missense_Mutation p.E1372K 0.25 deleterious(0) possibly_damaging(0.893) TCGA-EE-A29S-06 1 181727103 181727103 C T CACNA1E Silent p.A1450A 0.23 TCGA-EE-A29S-06 1 181741317 181741317 G A CACNA1E Missense_Mutation p.D1697N 0.29 tolerated(0.08) possibly_damaging(0.831) TCGA-EE-A29S-06 1 183539946 183539946 C T NCF2 Missense_Mutation p.S213N 0.21 tolerated(0.53) benign(0.007) TCGA-EE-A29S-06 1 184764696 184764696 C T FAM129A Silent p.T734T 0.22 TCGA-EE-A29S-06 1 184787912 184787912 G A FAM129A Missense_Mutation p.P345S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 185125639 185125639 A T TRMT1L Missense_Mutation p.L69Q 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-EE-A29S-06 1 185880845 185880845 T C HMCN1 Missense_Mutation p.L278S 0.23 probably_damaging(0.969) TCGA-EE-A29S-06 1 186289548 186289548 G A TPR Missense_Mutation p.S2155L 0.17 benign(0.009) TCGA-EE-A29S-06 1 186308903 186308903 T G TPR Missense_Mutation p.H1341P 0.33 benign(0.227) TCGA-EE-A29S-06 1 190067177 190067177 C T BRINP3 Missense_Mutation p.D758N 0.19 deleterious(0.01) benign(0.101) TCGA-EE-A29S-06 1 19166457 19166457 G A TAS1R2 Missense_Mutation p.S719F 0.27 deleterious(0) probably_damaging(0.971) TCGA-EE-A29S-06 1 19597390 19597390 G A AKR7L 5'UTR 0.36 TCGA-EE-A29S-06 1 196397324 196397324 C T KCNT2 Missense_Mutation p.E299K 0.24 deleterious(0) probably_damaging(0.991) TCGA-EE-A29S-06 1 196648791 196648791 C T CFH Missense_Mutation p.P220S 0.35 tolerated(0.71) benign(0.003) TCGA-EE-A29S-06 1 196694397 196694397 G A CFH Missense_Mutation p.G615R 0.24 deleterious(0) probably_damaging(0.989) TCGA-EE-A29S-06 1 197168953 197168953 A G ZBTB41 Silent p.C217C 0.21 TCGA-EE-A29S-06 1 197390234 197390234 G A CRB1 Missense_Mutation p.D426N 0.27 tolerated(0.3) possibly_damaging(0.756) TCGA-EE-A29S-06 1 197447027 197447027 G A CRB1 3'UTR 0.22 TCGA-EE-A29S-06 1 198492542 198492542 C T ATP6V1G3 Silent p.V112V 0.13 TCGA-EE-A29S-06 1 198719641 198719641 G A PTPRC Silent p.V1031V 0.19 TCGA-EE-A29S-06 1 200880599 200880599 G A C1orf106 Silent p.A326A 0.47 TCGA-EE-A29S-06 1 200944728 200944728 C T KIF21B Missense_Mutation p.D1505N 0.23 deleterious(0) probably_damaging(0.979) TCGA-EE-A29S-06 1 201980352 201980352 C T ELF3 Missense_Mutation p.P30S 0.19 tolerated(0.07) benign(0.219) TCGA-EE-A29S-06 1 204135391 204135391 C T REN Missense_Mutation p.G11R 0.15 tolerated(0.13) possibly_damaging(0.569) TCGA-EE-A29S-06 1 204135392 204135392 C T REN Nonsense_Mutation p.W10* 0.16 TCGA-EE-A29S-06 1 204218070 204218070 G A PLEKHA6 Missense_Mutation p.T568I 0.22 tolerated(0.05) possibly_damaging(0.766) TCGA-EE-A29S-06 1 204438440 204438440 G A PIK3C2B Missense_Mutation p.S164F 0.24 deleterious_low_confidence(0.03) benign(0.365) TCGA-EE-A29S-06 1 206145496 206145496 C T FAM72A Silent p.S91S 0.23 TCGA-EE-A29S-06 1 206653802 206653802 G C IKBKE Missense_Mutation p.Q451H 0.15 deleterious(0.02) benign(0.005) TCGA-EE-A29S-06 1 206769134 206769134 G A EIF2D Missense_Mutation p.P481L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 1 209961873 209961873 G A IRF6 Silent p.I432I 0.23 TCGA-EE-A29S-06 1 212273810 212273810 C T DTL Missense_Mutation p.P493L 0.22 tolerated(1) benign(0.034) TCGA-EE-A29S-06 1 214557534 214557534 G C PTPN14 Missense_Mutation p.T555R 0.23 deleterious(0.02) benign(0.171) TCGA-EE-A29S-06 1 214705762 214705762 G A PTPN14 Intron 0.29 TCGA-EE-A29S-06 1 214818958 214818958 C T CENPF Silent p.L2015L 0.23 TCGA-EE-A29S-06 1 216040459 216040459 G A USH2A Missense_Mutation p.P2912L 0.26 benign(0.021) TCGA-EE-A29S-06 1 216040460 216040460 G A USH2A Missense_Mutation p.P2912S 0.26 benign(0.016) TCGA-EE-A29S-06 1 216256809 216256809 C T USH2A Missense_Mutation p.D1763N 0.20 possibly_damaging(0.838) TCGA-EE-A29S-06 1 216420241 216420241 C T USH2A Missense_Mutation p.G832E 0.23 possibly_damaging(0.69) TCGA-EE-A29S-06 1 220089203 220089203 A T SLC30A10 Missense_Mutation p.L349Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A29S-06 1 221055508 221055508 C T HLX Missense_Mutation p.P259S 0.25 deleterious(0.04) possibly_damaging(0.764) TCGA-EE-A29S-06 1 224437954 224437954 G A NVL Missense_Mutation p.P750L 0.28 deleterious(0.03) benign(0.252) TCGA-EE-A29S-06 1 224927112 224927112 G A CNIH3 3'UTR 0.18 TCGA-EE-A29S-06 1 226580645 226580645 C T PARP1 Intron 0.17 TCGA-EE-A29S-06 1 228459736 228459736 G A OBSCN Missense_Mutation p.A1934T 0.38 probably_damaging(0.997) TCGA-EE-A29S-06 1 228479650 228479650 G A OBSCN Missense_Mutation p.G3893E 0.19 benign(0.329) TCGA-EE-A29S-06 1 233137423 233137423 C T PCNXL2 Missense_Mutation p.D1653N 0.24 deleterious(0.02) possibly_damaging(0.688) TCGA-EE-A29S-06 1 233190023 233190023 C T PCNXL2 Missense_Mutation p.E1448K 0.33 deleterious(0) probably_damaging(0.973) TCGA-EE-A29S-06 1 235922487 235922487 G A LYST Silent p.S2222S 0.32 TCGA-EE-A29S-06 1 236175237 236175237 G A NID1 Silent p.F837F 0.36 TCGA-EE-A29S-06 1 236176752 236176752 G A NID1 Missense_Mutation p.S788F 0.34 deleterious(0) possibly_damaging(0.482) TCGA-EE-A29S-06 1 237995993 237995993 C T RYR2 3'UTR 0.38 TCGA-EE-A29S-06 1 240341340 240341340 G A FMN2 Silent p.E634E 0.25 TCGA-EE-A29S-06 1 24130998 24130998 C T HMGCL Silent p.V256V 0.22 TCGA-EE-A29S-06 1 24658072 24658072 G A GRHL3 Silent p.A58A 0.34 TCGA-EE-A29S-06 1 247695697 247695697 C T OR2C3 Silent p.S39S 0.24 TCGA-EE-A29S-06 1 247737744 247737744 G A GCSAML 3'UTR 0.41 TCGA-EE-A29S-06 1 247751665 247751665 G T OR2G2 Missense_Mutation p.G2W 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 1 247751954 247751954 G T OR2G2 Missense_Mutation p.G98V 0.31 tolerated(0.14) benign(0.072) TCGA-EE-A29S-06 1 247752016 247752016 G T OR2G2 Missense_Mutation p.A119S 0.37 tolerated(0.11) benign(0.115) TCGA-EE-A29S-06 1 247752384 247752384 C T OR2G2 Silent p.F241F 0.39 TCGA-EE-A29S-06 1 247836281 247836281 C T OR13G1 Silent p.Q21Q 0.27 TCGA-EE-A29S-06 1 248005015 248005015 A G OR11L1 Missense_Mutation p.F62L 0.22 tolerated(0.05) benign(0.023) TCGA-EE-A29S-06 1 248085233 248085233 G A OR2T8 Missense_Mutation p.R305Q 0.29 tolerated(0.25) benign(0.001) TCGA-EE-A29S-06 1 248436937 248436937 G A OR2T33 Silent p.L60L 0.29 TCGA-EE-A29S-06 1 248570069 248570069 G A OR2T1 Silent p.L258L 0.30 TCGA-EE-A29S-06 1 248637404 248637404 C T OR2T3 Silent p.I251I 0.06 TCGA-EE-A29S-06 1 248685202 248685202 G A OR2G6 Missense_Mutation p.M85I 0.35 tolerated(0.07) benign(0.028) TCGA-EE-A29S-06 1 248737306 248737306 G A OR2T34 Silent p.I251I 0.25 TCGA-EE-A29S-06 1 248737705 248737705 G A OR2T34 Silent p.F118F 0.30 TCGA-EE-A29S-06 1 248814048 248814048 G A OR2T27 Silent p.I46I 0.10 TCGA-EE-A29S-06 1 27240295 27240295 G A NR0B2 Missense_Mutation p.P46L 0.32 tolerated(0.18) benign(0.025) TCGA-EE-A29S-06 1 27440722 27440722 G A SLC9A1 Silent p.I136I 0.26 TCGA-EE-A29S-06 1 32687979 32687979 G A EIF3I 5'UTR 0.28 TCGA-EE-A29S-06 1 33960417 33960417 A G ZSCAN20 Missense_Mutation p.S825G 0.32 tolerated(0.48) benign(0.002) TCGA-EE-A29S-06 1 39877893 39877893 C T KIAA0754 Silent p.F516F 0.35 TCGA-EE-A29S-06 1 40766781 40766781 G A COL9A2 3'UTR 0.47 TCGA-EE-A29S-06 1 43212781 43212781 A G LEPRE1 Silent p.H739H 0.33 TCGA-EE-A29S-06 1 44085852 44085852 C T PTPRF Missense_Mutation p.T1733I 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 1 45232902 45232902 C T KIF2C 3'UTR 0.54 TCGA-EE-A29S-06 1 46655019 46655019 G A POMGNT1 Missense_Mutation p.A627V 0.34 benign(0.013) TCGA-EE-A29S-06 1 47155322 47155322 G A EFCAB14 Silent p.I244I 0.30 TCGA-EE-A29S-06 1 47515792 47515792 C T CYP4X1 Silent p.I492I 0.34 TCGA-EE-A29S-06 1 47767312 47767312 G A STIL Missense_Mutation p.P125L 0.37 deleterious(0.01) benign(0.299) TCGA-EE-A29S-06 1 48694828 48694828 G A SLC5A9 Silent p.G131G 0.25 TCGA-EE-A29S-06 1 53544160 53544160 G A PODN Silent p.A374A 0.27 TCGA-EE-A29S-06 1 57257916 57257916 T C C1orf168 Silent p.G190G 0.26 TCGA-EE-A29S-06 1 57257918 57257918 C T C1orf168 Missense_Mutation p.G190R 0.26 deleterious(0.04) possibly_damaging(0.687) TCGA-EE-A29S-06 1 57347274 57347274 G A C8A Silent p.R207R 0.33 TCGA-EE-A29S-06 1 57411683 57411683 G A C8B Silent p.L306L 0.39 TCGA-EE-A29S-06 1 57480852 57480852 G A DAB1 Missense_Mutation p.P383L 0.30 tolerated(0.19) benign(0.096) TCGA-EE-A29S-06 1 57491671 57491671 C T DAB1 Missense_Mutation p.D257N 0.32 deleterious(0) probably_damaging(0.971) TCGA-EE-A29S-06 1 57537266 57537266 C T DAB1 Missense_Mutation p.E163K 0.34 tolerated(0.06) benign(0.051) TCGA-EE-A29S-06 1 62582327 62582327 G A INADL Silent p.Q1593Q 0.24 TCGA-EE-A29S-06 1 66031251 66031251 G A LEPR Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A29S-06 1 66102394 66102394 G A LEPR Missense_Mutation p.G1065E 0.33 tolerated(0.8) benign(0.008) TCGA-EE-A29S-06 1 6640826 6640826 A G ZBTB48 Missense_Mutation p.S53G 0.37 tolerated(0.21) benign(0.01) TCGA-EE-A29S-06 1 70460244 70460244 G A LRRC7 Missense_Mutation p.G273E 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A29S-06 1 75038379 75038379 C T C1orf173 Silent p.R1005R 0.26 TCGA-EE-A29S-06 1 75072535 75072535 C T C1orf173 Silent p.R413R 0.31 TCGA-EE-A29S-06 1 75078468 75078468 C T C1orf173 Silent p.R342R 0.25 TCGA-EE-A29S-06 1 77515943 77515943 G A ST6GALNAC5 Silent p.R224R 0.36 TCGA-EE-A29S-06 1 77763519 77763519 G A AK5 Missense_Mutation p.E196K 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A29S-06 1 77806142 77806142 G A AK5 Silent p.Q260Q 0.38 TCGA-EE-A29S-06 1 78325048 78325048 C T FAM73A Missense_Mutation p.H389Y 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A29S-06 1 85020879 85020879 G A CTBS Missense_Mutation p.P321S 0.17 tolerated(1) benign(0.006) TCGA-EE-A29S-06 1 85127991 85127991 C T SSX2IP Missense_Mutation p.E273K 0.35 deleterious(0) probably_damaging(0.987) TCGA-EE-A29S-06 1 91180111 91180111 G A BARHL2 Silent p.V276V 0.27 TCGA-EE-A29S-06 1 91816348 91816348 C T HFM1 Nonsense_Mutation p.W718* 0.32 TCGA-EE-A29S-06 1 93988993 93988993 G A FNBP1L Missense_Mutation p.R96K 0.29 tolerated(0.49) benign(0.007) TCGA-EE-A29S-06 1 9713832 9713832 G A C1orf200 3'UTR 0.31 TCGA-EE-A29S-06 20 10032475 10032475 G A ANKEF1 Missense_Mutation p.R603K 0.38 tolerated(0.07) benign(0.341) TCGA-EE-A29S-06 20 13052903 13052903 G A SPTLC3 Splice_Site p.X102_splice 0.27 TCGA-EE-A29S-06 20 13052904 13052904 G A SPTLC3 Missense_Mutation p.D102N 0.26 tolerated(0.07) benign(0.016) TCGA-EE-A29S-06 20 1629935 1629935 G A SIRPG Silent p.L65L 0.35 TCGA-EE-A29S-06 20 2312663 2312663 G A TGM3 Missense_Mutation p.R450K 0.27 deleterious(0) possibly_damaging(0.455) TCGA-EE-A29S-06 20 23966723 23966723 G A GGTLC1 Silent p.F98F 0.28 TCGA-EE-A29S-06 20 2843503 2843503 C T VPS16 Silent p.F418F 0.31 TCGA-EE-A29S-06 20 30155966 30155966 G A HM13 Missense_Mutation p.D374N 0.23 tolerated_low_confidence(0.21) benign(0.002) TCGA-EE-A29S-06 20 31585462 31585462 C T SUN5 Silent p.S124S 0.34 TCGA-EE-A29S-06 20 34025173 34025173 G A GDF5 Missense_Mutation p.T179M 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 20 34129922 34129922 G A ERGIC3 Missense_Mutation p.G26R 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A29S-06 20 34220572 34220572 G A CPNE1 Missense_Mutation p.S64F 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A29S-06 20 37536765 37536765 G A PPP1R16B Missense_Mutation p.E375K 0.33 tolerated(0.09) benign(0.11) TCGA-EE-A29S-06 20 41101171 41101171 G A PTPRT Silent p.I395I 0.31 TCGA-EE-A29S-06 20 44313465 44313465 C T WFDC10B 3'UTR 0.33 TCGA-EE-A29S-06 20 44669124 44669124 C T SLC12A5 Missense_Mutation p.A265V 0.34 tolerated(0.1) probably_damaging(0.954) TCGA-EE-A29S-06 20 45717880 45717880 G A EYA2 Missense_Mutation p.E222K 0.45 tolerated(0.16) benign(0.128) TCGA-EE-A29S-06 20 47991420 47991420 T C KCNB1 Missense_Mutation p.N226S 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 20 48130814 48130814 G A PTGIS Missense_Mutation p.S325L 0.27 tolerated(0.19) benign(0.009) TCGA-EE-A29S-06 20 5090008 5090008 G A TMEM230 Silent p.S86S 0.30 TCGA-EE-A29S-06 20 5165588 5165588 C T CDS2 Silent p.I252I 0.36 TCGA-EE-A29S-06 20 52192361 52192361 G A ZNF217 Missense_Mutation p.P981L 0.46 tolerated(0.26) benign(0.007) TCGA-EE-A29S-06 20 57768659 57768659 C T ZNF831 Missense_Mutation p.P862L 0.23 tolerated(0.4) benign(0.007) TCGA-EE-A29S-06 20 60891788 60891788 G A LAMA5 Silent p.L2565L 0.28 TCGA-EE-A29S-06 20 60893546 60893546 G A LAMA5 Silent p.L2401L 0.34 TCGA-EE-A29S-06 20 61512940 61512940 G A DIDO1 Silent p.S1456S 0.42 TCGA-EE-A29S-06 20 61875382 61875382 C T NKAIN4 Missense_Mutation p.D176N 0.38 deleterious(0.01) possibly_damaging(0.825) TCGA-EE-A29S-06 20 62127253 62127253 C G EEF1A2 Missense_Mutation p.G94R 0.30 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A29S-06 20 62421228 62421228 G A ZBTB46 Missense_Mutation p.P295S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29S-06 20 9438076 9438076 C T PLCB4 Silent p.L992L 0.29 TCGA-EE-A29S-06 20 9510436 9510436 G A LAMP5 Missense_Mutation p.R271Q 0.33 tolerated(0.1) benign(0.219) TCGA-EE-A29S-06 21 11098778 11098778 C T BAGE2 RNA 0.20 TCGA-EE-A29S-06 21 15599315 15599315 G A RBM11 Missense_Mutation p.G183R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29S-06 21 28296611 28296611 G A ADAMTS5 Missense_Mutation p.P852S 0.35 tolerated(0.05) probably_damaging(1) TCGA-EE-A29S-06 21 31797893 31797893 C T KRTAP13-3 Missense_Mutation p.G113E 0.31 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A29S-06 21 34969608 34969608 A G CRYZL1 Missense_Mutation p.V259A 0.33 deleterious(0) benign(0.142) TCGA-EE-A29S-06 21 35468581 35468581 G A SLC5A3 Missense_Mutation p.G362S 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29S-06 21 40794834 40794834 T A LCA5L Intron 0.24 TCGA-EE-A29S-06 21 41151098 41151098 T C IGSF5 Missense_Mutation p.V267A 0.27 tolerated(0.41) benign(0) TCGA-EE-A29S-06 21 41465792 41465792 C T DSCAM Missense_Mutation p.E1236K 0.31 tolerated(0.12) probably_damaging(0.939) TCGA-EE-A29S-06 21 43796756 43796756 G A TMPRSS3 Missense_Mutation p.P363L 0.28 deleterious(0.02) probably_damaging(1) TCGA-EE-A29S-06 21 45666382 45666382 C T DNMT3L Silent p.S354S 0.35 TCGA-EE-A29S-06 21 45855045 45855045 C T TRPM2 Missense_Mutation p.R1336C 0.23 deleterious(0.01) benign(0.046) TCGA-EE-A29S-06 21 45999863 45999863 G A KRTAP10-5 Missense_Mutation p.S198L 0.33 tolerated(0.45) benign(0.32) TCGA-EE-A29S-06 21 46021045 46021045 C T KRTAP10-7 Missense_Mutation p.S175F 0.14 tolerated(0.41) unknown(0) TCGA-EE-A29S-06 22 16287624 16287624 C T POTEH Missense_Mutation p.D88N 0.26 tolerated_low_confidence(0.05) probably_damaging(0.995) TCGA-EE-A29S-06 22 17071724 17071724 G A CCT8L2 3'UTR 0.42 TCGA-EE-A29S-06 22 20130716 20130716 A G ZDHHC8 Silent p.L521L 0.44 TCGA-EE-A29S-06 22 20749677 20749677 C T ZNF74 Missense_Mutation p.S30L 0.36 tolerated(0.93) benign(0) TCGA-EE-A29S-06 22 22890689 22890689 G A PRAME Missense_Mutation p.P444S 0.25 deleterious(0) probably_damaging(0.95) TCGA-EE-A29S-06 22 23401895 23401895 C T RTDR1 Silent p.G264G 0.27 TCGA-EE-A29S-06 22 23523851 23523851 C T BCR Missense_Mutation p.S235F 0.38 deleterious_low_confidence(0.02) benign(0.006) TCGA-EE-A29S-06 22 32586628 32586628 A G RFPL2 3'UTR 0.50 TCGA-EE-A29S-06 22 32810246 32810246 G A BPIFC 3'UTR 0.22 TCGA-EE-A29S-06 22 35719769 35719769 C T TOM1 Silent p.F170F 0.37 TCGA-EE-A29S-06 22 36587653 36587653 C T APOL4 Missense_Mutation p.V175I 0.67 tolerated(0.48) benign(0.005) TCGA-EE-A29S-06 22 36587654 36587654 C A APOL4 Silent p.G174G 0.67 TCGA-EE-A29S-06 22 37462877 37462877 C T TMPRSS6 Missense_Mutation p.D756N 0.50 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A29S-06 22 37462878 37462878 C T TMPRSS6 Silent p.K755K 0.50 TCGA-EE-A29S-06 22 37882124 37882124 G A MFNG Missense_Mutation p.S31F 0.43 deleterious(0.01) benign(0.009) TCGA-EE-A29S-06 22 38121280 38121280 G A TRIOBP Nonsense_Mutation p.W906* 0.36 TCGA-EE-A29S-06 22 38122340 38122340 G A TRIOBP Silent p.G1259G 0.30 TCGA-EE-A29S-06 22 38130463 38130463 C T TRIOBP Missense_Mutation p.P1374S 0.27 tolerated_low_confidence(0.06) benign(0.023) TCGA-EE-A29S-06 22 38934544 38934544 C T DMC1 Silent p.L220L 0.31 TCGA-EE-A29S-06 22 39414279 39414279 A G APOBEC3C Missense_Mutation p.K154E 0.32 tolerated(0.6) benign(0.014) TCGA-EE-A29S-06 22 39530002 39530002 G A CBX7 Missense_Mutation p.S217L 0.29 tolerated(0.07) benign(0.014) TCGA-EE-A29S-06 22 40711975 40711975 C T TNRC6B Missense_Mutation p.R1645C 0.19 deleterious(0) benign(0.012) TCGA-EE-A29S-06 22 41670628 41670628 G A RANGAP1 Silent p.A72A 0.31 TCGA-EE-A29S-06 22 42112052 42112052 A G MEI1 Missense_Mutation p.N144S 0.31 tolerated(0.31) benign(0.019) TCGA-EE-A29S-06 22 42608208 42608208 G A TCF20 Missense_Mutation p.P1035L 0.25 probably_damaging(0.999) TCGA-EE-A29S-06 22 44602267 44602267 G A PARVG Silent p.K319K 0.23 TCGA-EE-A29S-06 22 50552809 50552809 G A MOV10L1 Splice_Site p.X295_splice 0.35 TCGA-EE-A29S-06 22 50894674 50894674 A C SBF1 Missense_Mutation p.S1413A 0.35 tolerated(1) benign(0.003) TCGA-EE-A29S-06 22 51160790 51160790 C T SHANK3 Missense_Mutation p.S1526F 0.39 probably_damaging(0.997) TCGA-EE-A29S-06 2 100065959 100065959 G A REV1 Silent p.S63S 0.41 TCGA-EE-A29S-06 2 101086963 101086963 C T NMS Missense_Mutation p.R5C 0.36 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A29S-06 2 101874356 101874356 G A CNOT11 Silent p.L206L 0.29 TCGA-EE-A29S-06 2 107041631 107041631 C T RGPD3 Missense_Mutation p.G931E 0.32 tolerated(0.09) benign(0.003) TCGA-EE-A29S-06 2 107449109 107449109 G A ST6GAL2 Missense_Mutation p.P352L 0.39 probably_damaging(0.971) TCGA-EE-A29S-06 2 1094083 1094083 C T SNTG2 Silent p.F104F 0.40 TCGA-EE-A29S-06 2 112786332 112786332 G A MERTK Missense_Mutation p.R964K 0.40 tolerated_low_confidence(0.19) benign(0.004) TCGA-EE-A29S-06 2 113875586 113875586 G A IL1RN 5'UTR 0.21 TCGA-EE-A29S-06 2 116066870 116066870 T C DPP10 Missense_Mutation p.L43P 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 2 119739969 119739969 G A MARCO Missense_Mutation p.G349E 0.34 deleterious(0) unknown(0) TCGA-EE-A29S-06 2 121728001 121728001 C T GLI2 Missense_Mutation p.P293L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 2 1263181 1263181 C T SNTG2 Missense_Mutation p.H349Y 0.32 deleterious(0.02) benign(0.001) TCGA-EE-A29S-06 2 128471308 128471308 G A WDR33 Missense_Mutation p.P1053S 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.676) TCGA-EE-A29S-06 2 131521402 131521402 G A AMER3 Missense_Mutation p.G586E 0.29 tolerated(0.12) benign(0.009) TCGA-EE-A29S-06 2 132290506 132290506 C T CCDC74A Missense_Mutation p.P316S 0.12 tolerated(0.06) possibly_damaging(0.546) TCGA-EE-A29S-06 2 137852488 137852488 C T THSD7B Silent p.I332I 0.30 TCGA-EE-A29S-06 2 138000107 138000107 G A THSD7B Missense_Mutation p.S744N 0.36 deleterious(0) benign(0.383) TCGA-EE-A29S-06 2 141055473 141055473 C T LRP1B Missense_Mutation p.D4291N 0.29 benign(0.002) TCGA-EE-A29S-06 2 141214114 141214114 G A LRP1B Silent p.A3291A 0.26 TCGA-EE-A29S-06 2 145147368 145147368 C T ZEB2 Missense_Mutation p.G1099R 0.32 deleterious(0) probably_damaging(0.942) TCGA-EE-A29S-06 2 149241074 149241074 C T MBD5 Intron 0.28 TCGA-EE-A29S-06 2 155099418 155099418 G A GALNT13 Missense_Mutation p.R229K 0.22 tolerated(0.17) benign(0.121) TCGA-EE-A29S-06 2 155555903 155555903 G A KCNJ3 Missense_Mutation p.D206N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 2 158275047 158275047 G A CYTIP Missense_Mutation p.R201C 0.29 tolerated(0.05) possibly_damaging(0.855) TCGA-EE-A29S-06 2 160076290 160076290 T A TANC1 Missense_Mutation p.L1197Q 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 2 160076291 160076291 G T TANC1 Silent p.L1197L 0.27 TCGA-EE-A29S-06 2 163070513 163070513 G A FAP Nonsense_Mutation p.Q313* 0.34 TCGA-EE-A29S-06 2 163302577 163302577 A G KCNH7 Missense_Mutation p.V502A 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A29S-06 2 166894598 166894598 C T SCN1A Missense_Mutation p.M878I 0.15 deleterious(0.03) benign(0.363) TCGA-EE-A29S-06 2 167137049 167137049 A G SCN9A Missense_Mutation p.F710L 0.31 deleterious(0.05) benign(0.131) TCGA-EE-A29S-06 2 16740731 16740731 G A FAM49A Silent p.I278I 0.21 TCGA-EE-A29S-06 2 167760074 167760074 C T XIRP2 Missense_Mutation p.P28S 0.47 possibly_damaging(0.833) TCGA-EE-A29S-06 2 168099850 168099850 G A XIRP2 Missense_Mutation p.D650N 0.35 probably_damaging(1) TCGA-EE-A29S-06 2 168102404 168102404 C T XIRP2 Missense_Mutation p.S1501F 0.35 probably_damaging(0.979) TCGA-EE-A29S-06 2 168105286 168105286 G A XIRP2 Missense_Mutation p.D2462N 0.26 benign(0.022) TCGA-EE-A29S-06 2 1687882 1687882 G A PXDN Missense_Mutation p.S153L 0.31 tolerated(0.09) benign(0.053) TCGA-EE-A29S-06 2 169780207 169780207 C T ABCB11 Silent p.K1297K 0.38 TCGA-EE-A29S-06 2 169938197 169938197 G A DHRS9 Missense_Mutation p.G36R 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 2 170150729 170150729 T C LRP2 Missense_Mutation p.E194G 0.27 benign(0.315) TCGA-EE-A29S-06 2 170460737 170460737 C T PPIG Silent p.P34P 0.22 TCGA-EE-A29S-06 2 171259407 171259407 G A MYO3B Missense_Mutation p.E727K 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 2 171687702 171687702 G A GAD1 Missense_Mutation p.G183S 0.28 tolerated(0.13) probably_damaging(0.977) TCGA-EE-A29S-06 2 179483462 179483462 A G TTN Silent p.N15605N 0.34 TCGA-EE-A29S-06 2 179497472 179497472 C T TTN Missense_Mutation p.E14421K 0.29 TCGA-EE-A29S-06 2 179582292 179582292 G A TTN Missense_Mutation p.P8437S 0.39 TCGA-EE-A29S-06 2 179599613 179599613 A G TTN Missense_Mutation p.V5013A 0.31 TCGA-EE-A29S-06 2 179621435 179621435 C T TTN Missense_Mutation p.E3590K 0.39 TCGA-EE-A29S-06 2 179639084 179639084 C T TTN Missense_Mutation p.D2303N 0.25 TCGA-EE-A29S-06 2 179665268 179665268 C T TTN Missense_Mutation p.S146N 0.32 TCGA-EE-A29S-06 2 179742776 179742776 G A CCDC141 Missense_Mutation p.S605L 0.37 tolerated(0.09) benign(0.007) TCGA-EE-A29S-06 2 183050710 183050710 G A PDE1A Silent p.S491S 0.24 TCGA-EE-A29S-06 2 183050711 183050711 G A PDE1A Missense_Mutation p.S491F 0.24 deleterious(0) probably_damaging(0.952) TCGA-EE-A29S-06 2 183291474 183291474 C T PDE1A Intron 0.57 TCGA-EE-A29S-06 2 185801055 185801055 T C ZNF804A Missense_Mutation p.F311S 0.36 tolerated(0.23) benign(0.446) TCGA-EE-A29S-06 2 185802039 185802039 C T ZNF804A Missense_Mutation p.S639L 0.28 tolerated(0.18) benign(0.043) TCGA-EE-A29S-06 2 185803026 185803026 C T ZNF804A Missense_Mutation p.S968F 0.24 deleterious(0) probably_damaging(0.979) TCGA-EE-A29S-06 2 189875511 189875511 T C COL3A1 Silent p.S1383S 0.30 TCGA-EE-A29S-06 2 189904059 189904059 C T COL5A2 Silent p.S1288S 0.37 TCGA-EE-A29S-06 2 191302285 191302285 C T MFSD6 Silent p.I510I 0.33 TCGA-EE-A29S-06 2 191919235 191919235 G A STAT4 Missense_Mutation p.A411V 0.34 tolerated(0.32) benign(0.021) TCGA-EE-A29S-06 2 196673509 196673509 G A DNAH7 Missense_Mutation p.S3327F 0.25 deleterious(0) possibly_damaging(0.896) TCGA-EE-A29S-06 2 197189721 197189721 G A HECW2 Missense_Mutation p.P242S 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 2 198640397 198640397 C T BOLL Missense_Mutation p.G127E 0.21 tolerated(0.26) possibly_damaging(0.559) TCGA-EE-A29S-06 2 201862171 201862171 G A FAM126B Missense_Mutation p.S208F 0.45 deleterious(0) probably_damaging(0.993) TCGA-EE-A29S-06 2 202899380 202899380 C A FZD7 Missense_Mutation p.P4T 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-EE-A29S-06 2 202899381 202899381 C T FZD7 Missense_Mutation p.P4L 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-EE-A29S-06 2 206608133 206608133 G A NRP2 Missense_Mutation p.G500S 0.32 deleterious(0.03) possibly_damaging(0.613) TCGA-EE-A29S-06 2 207432007 207432007 G A ADAM23 Silent p.Q485Q 0.31 TCGA-EE-A29S-06 2 211525356 211525356 C T CPS1 Missense_Mutation p.P1308S 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A29S-06 2 215914501 215914501 C T ABCA12 Missense_Mutation p.R181Q 0.31 deleterious(0.03) possibly_damaging(0.812) TCGA-EE-A29S-06 2 216289985 216289985 G A FN1 Missense_Mutation p.R290C 0.30 deleterious(0) benign(0.443) TCGA-EE-A29S-06 2 219528914 219528914 G A RNF25 Silent p.P382P 0.37 TCGA-EE-A29S-06 2 226378312 226378312 C T NYAP2 Silent p.T149T 0.32 TCGA-EE-A29S-06 2 226447391 226447391 C T NYAP2 Silent p.L420L 0.35 TCGA-EE-A29S-06 2 227954611 227954611 C T COL4A4 Missense_Mutation p.G478R 0.25 probably_damaging(0.979) TCGA-EE-A29S-06 2 228176669 228176669 C T COL4A3 3'UTR 0.25 TCGA-EE-A29S-06 2 229890500 229890500 C T PID1 Missense_Mutation p.E199K 0.34 tolerated(0.17) possibly_damaging(0.475) TCGA-EE-A29S-06 2 232324987 232324987 C T NCL Missense_Mutation p.A306T 0.38 benign(0.006) TCGA-EE-A29S-06 2 233243487 233243487 C T ALPP 5'UTR 0.34 TCGA-EE-A29S-06 2 233321872 233321872 G A ALPI Missense_Mutation p.G163E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 2 233400100 233400100 C T CHRND 3'UTR 0.35 TCGA-EE-A29S-06 2 233410255 233410255 G A CHRNG Silent p.G461G 0.32 TCGA-EE-A29S-06 2 235404408 235404408 C T ARL4C 3'UTR 0.31 TCGA-EE-A29S-06 2 237150083 237150083 C T ASB18 Intron 0.39 TCGA-EE-A29S-06 2 239307625 239307625 C T TRAF3IP1 3'UTR 0.44 TCGA-EE-A29S-06 2 242644072 242644072 C T ING5 Silent p.I14I 0.29 TCGA-EE-A29S-06 2 25016031 25016031 G A PTRHD1 Silent p.L72L 0.39 TCGA-EE-A29S-06 2 26712562 26712562 T C OTOF Missense_Mutation p.K315R 0.32 tolerated(0.15) benign(0.232) TCGA-EE-A29S-06 2 26725247 26725247 G A OTOF Missense_Mutation p.R211W 0.43 deleterious(0.01) possibly_damaging(0.667) TCGA-EE-A29S-06 2 27167571 27167571 C T DPYSL5 Silent p.V496V 0.32 TCGA-EE-A29S-06 2 29430064 29430064 C T ALK Missense_Mutation p.G1304E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 2 31571779 31571779 G A XDH Missense_Mutation p.P1013S 0.40 tolerated(0.79) benign(0.001) TCGA-EE-A29S-06 2 31591449 31591449 C T XDH Silent p.V686V 0.38 TCGA-EE-A29S-06 2 31606681 31606681 G A XDH Missense_Mutation p.P276S 0.26 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A29S-06 2 32865405 32865405 C T TTC27 Silent p.T155T 0.34 TCGA-EE-A29S-06 2 39499424 39499424 C T MAP4K3 Missense_Mutation p.R658K 0.36 tolerated(0.07) probably_damaging(0.933) TCGA-EE-A29S-06 2 45620195 45620195 G A SRBD1 Missense_Mutation p.L863F 0.35 tolerated(0.07) benign(0.444) TCGA-EE-A29S-06 2 46815296 46815296 C A PIGF Intron 0.46 TCGA-EE-A29S-06 2 48921445 48921445 T A LHCGR Splice_Site p.X289_splice 0.38 TCGA-EE-A29S-06 2 51254950 51254950 G A NRXN1 Silent p.F154F 0.38 TCGA-EE-A29S-06 2 63282713 63282713 G A OTX1 Silent p.K109K 0.29 TCGA-EE-A29S-06 2 69664535 69664535 C T NFU1 Missense_Mutation p.R7Q 0.17 tolerated(0.09) unknown(0) TCGA-EE-A29S-06 2 70528059 70528059 C T FAM136A Missense_Mutation p.M47I 0.34 tolerated(0.07) benign(0.141) TCGA-EE-A29S-06 2 71365781 71365781 A G MPHOSPH10 Intron 0.22 TCGA-EE-A29S-06 2 73315848 73315848 A T RAB11FIP5 Missense_Mutation p.F300I 0.24 tolerated(0.09) benign(0.012) TCGA-EE-A29S-06 2 73315849 73315849 C A RAB11FIP5 Silent p.L299L 0.23 TCGA-EE-A29S-06 2 73680141 73680141 G A ALMS1 Missense_Mutation p.E2162K 0.29 possibly_damaging(0.728) TCGA-EE-A29S-06 2 74597462 74597462 G A DCTN1 Missense_Mutation p.L380F 0.28 deleterious(0) probably_damaging(0.987) TCGA-EE-A29S-06 2 74657764 74657764 G A RTKN Missense_Mutation p.R118C 0.32 deleterious(0) possibly_damaging(0.832) TCGA-EE-A29S-06 2 74867172 74867172 G A M1AP Silent p.L77L 0.35 TCGA-EE-A29S-06 2 79385460 79385460 G A REG3A Missense_Mutation p.P109S 0.29 deleterious(0.04) possibly_damaging(0.806) TCGA-EE-A29S-06 2 85576630 85576630 G A RETSAT Missense_Mutation p.P292S 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 2 85829155 85829155 G A TMEM150A 5'UTR 0.24 TCGA-EE-A29S-06 2 86075166 86075166 A T ST3GAL5 Silent p.P160P 0.32 TCGA-EE-A29S-06 2 88478479 88478479 C T THNSL2 Missense_Mutation p.P250L 0.32 deleterious(0.01) benign(0.049) TCGA-EE-A29S-06 2 89544336 89544336 G A IGKV2-30 Silent p.F96F 0.29 TCGA-EE-A29S-06 2 90212142 90212142 C T IGKV3D-11 Silent p.I78I 0.28 TCGA-EE-A29S-06 2 95945724 95945724 C T PROM2 Missense_Mutation p.A469V 0.20 deleterious(0) probably_damaging(0.94) TCGA-EE-A29S-06 2 97860484 97860484 C T ANKRD36 Missense_Mutation p.A824V 0.21 tolerated_low_confidence(0.07) probably_damaging(0.989) TCGA-EE-A29S-06 2 98408897 98408897 G A TMEM131 Silent p.L1366L 0.43 TCGA-EE-A29S-06 3 100368602 100368602 C T GPR128 Silent p.L444L 0.35 TCGA-EE-A29S-06 3 101049186 101049186 C T SENP7 Missense_Mutation p.D915N 0.40 tolerated(0.08) possibly_damaging(0.9) TCGA-EE-A29S-06 3 10428192 10428192 C T ATP2B2 Silent p.V304V 0.27 TCGA-EE-A29S-06 3 108100387 108100387 G A MYH15 3'UTR 0.28 TCGA-EE-A29S-06 3 108147639 108147639 G T MYH15 Missense_Mutation p.D1154E 0.29 tolerated(1) benign(0.027) TCGA-EE-A29S-06 3 108627031 108627031 G A GUCA1C Silent p.I156I 0.33 TCGA-EE-A29S-06 3 10865057 10865057 C T SLC6A11 Silent p.S201S 0.17 TCGA-EE-A29S-06 3 109028175 109028175 G A DPPA2 Missense_Mutation p.H62Y 0.32 tolerated(0.6) benign(0.042) TCGA-EE-A29S-06 3 10916703 10916703 G A SLC6A11 Missense_Mutation p.G272R 0.23 deleterious(0) probably_damaging(0.928) TCGA-EE-A29S-06 3 111319611 111319611 G A CD96 Missense_Mutation p.G329R 0.31 deleterious(0.03) probably_damaging(0.97) TCGA-EE-A29S-06 3 115529153 115529153 T C LSAMP 3'UTR 0.71 TCGA-EE-A29S-06 3 120998689 120998689 G A STXBP5L Missense_Mutation p.D666N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 3 121132123 121132123 G A STXBP5L Missense_Mutation p.E1047K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 3 121178906 121178906 C A POLQ Missense_Mutation p.Q2381H 0.28 deleterious(0.05) benign(0.443) TCGA-EE-A29S-06 3 121647961 121647961 C T SLC15A2 Missense_Mutation p.R492C 0.34 tolerated(0.17) benign(0.009) TCGA-EE-A29S-06 3 121825089 121825089 G A CD86 Missense_Mutation p.E149K 0.37 tolerated(0.42) possibly_damaging(0.544) TCGA-EE-A29S-06 3 121838290 121838290 A T CD86 Missense_Mutation p.K300I 0.31 deleterious(0.02) benign(0.445) TCGA-EE-A29S-06 3 122247372 122247372 G A PARP9 Missense_Mutation p.P802S 0.37 deleterious(0) possibly_damaging(0.893) TCGA-EE-A29S-06 3 122629035 122629035 G A SEMA5B Silent p.F1191F 0.32 TCGA-EE-A29S-06 3 127540652 127540652 C T MGLL Missense_Mutation p.E14K 0.27 tolerated_low_confidence(0.1) benign(0.005) TCGA-EE-A29S-06 3 12779254 12779254 C T TMEM40 Splice_Site p.X142_splice 0.18 TCGA-EE-A29S-06 3 129221680 129221680 C T IFT122 Silent p.L885L 0.23 TCGA-EE-A29S-06 3 131274382 131274382 G A CPNE4 Missense_Mutation p.P359S 0.31 tolerated(0.24) probably_damaging(0.999) TCGA-EE-A29S-06 3 132347256 132347256 G A ACAD11 Missense_Mutation p.S333L 0.29 deleterious(0.01) possibly_damaging(0.481) TCGA-EE-A29S-06 3 133666165 133666165 G A SLCO2A1 Silent p.I410I 0.33 TCGA-EE-A29S-06 3 13660510 13660510 C T FBLN2 Silent p.T682T 0.30 TCGA-EE-A29S-06 3 138456620 138456620 A G PIK3CB Missense_Mutation p.Y244H 0.33 tolerated(0.05) benign(0) TCGA-EE-A29S-06 3 140282888 140282888 G A CLSTN2 Silent p.R856R 0.34 TCGA-EE-A29S-06 3 141891283 141891283 G A GK5 Missense_Mutation p.P387S 0.34 tolerated(0.2) probably_damaging(0.936) TCGA-EE-A29S-06 3 147113707 147113707 G A ZIC4 Missense_Mutation p.P257L 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29S-06 3 148925385 148925385 A G CP Silent p.F267F 0.40 TCGA-EE-A29S-06 3 151160909 151160909 C T IGSF10 Silent p.R1942R 0.31 TCGA-EE-A29S-06 3 151171407 151171407 C T IGSF10 Silent p.L160L 0.36 TCGA-EE-A29S-06 3 151532020 151532020 C T AADAC Missense_Mutation p.P24S 0.27 tolerated(0.05) benign(0.298) TCGA-EE-A29S-06 3 15297698 15297698 G A SH3BP5 Silent p.S421S 0.21 TCGA-EE-A29S-06 3 154861352 154861352 A G MME Missense_Mutation p.K437E 0.31 deleterious(0.04) possibly_damaging(0.581) TCGA-EE-A29S-06 3 155311970 155311970 A G PLCH1 Missense_Mutation p.L65P 0.33 tolerated(0.1) possibly_damaging(0.602) TCGA-EE-A29S-06 3 156139422 156139422 G A KCNAB1 Missense_Mutation p.G98E 0.29 deleterious(0) probably_damaging(0.975) TCGA-EE-A29S-06 3 164748583 164748583 C T SI Missense_Mutation p.E937K 0.29 tolerated(0.08) benign(0.186) TCGA-EE-A29S-06 3 16475377 16475377 G A RFTN1 Silent p.L105L 0.25 TCGA-EE-A29S-06 3 167322228 167322228 G A WDR49 5'UTR 0.29 TCGA-EE-A29S-06 3 172163170 172163170 G A GHSR Silent p.S294S 0.32 TCGA-EE-A29S-06 3 172224479 172224479 G A TNFSF10 Missense_Mutation p.P217S 0.33 deleterious(0.02) probably_damaging(0.942) TCGA-EE-A29S-06 3 179109908 179109908 T C MFN1 3'UTR 0.38 TCGA-EE-A29S-06 3 183860885 183860885 A T EIF2B5 Missense_Mutation p.E567V 0.20 deleterious(0) possibly_damaging(0.73) TCGA-EE-A29S-06 3 18391023 18391023 T G SATB1 Missense_Mutation p.K676T 0.25 deleterious(0.01) benign(0.124) TCGA-EE-A29S-06 3 18393664 18393664 G A SATB1 Silent p.R533R 0.16 TCGA-EE-A29S-06 3 185232280 185232280 A C LIPH Missense_Mutation p.W338G 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 3 186256754 186256754 T A CRYGS Missense_Mutation p.S90C 0.31 tolerated(0.11) possibly_damaging(0.485) TCGA-EE-A29S-06 3 186961301 186961301 G A MASP1 Missense_Mutation p.P400L 0.27 tolerated(0.11) benign(0.135) TCGA-EE-A29S-06 3 189038470 189038470 C T TPRG1 Missense_Mutation p.S230L 0.25 tolerated(0.08) benign(0.054) TCGA-EE-A29S-06 3 190025956 190025956 C T CLDN1 3'UTR 0.32 TCGA-EE-A29S-06 3 195599249 195599249 G A TNK2 Missense_Mutation p.S513L 0.22 deleterious(0) possibly_damaging(0.8) TCGA-EE-A29S-06 3 197640616 197640616 A C IQCG Intron 0.61 TCGA-EE-A29S-06 3 19992420 19992420 C T RAB5A Silent p.N10N 0.15 TCGA-EE-A29S-06 3 21706431 21706431 G A ZNF385D Missense_Mutation p.P38S 0.26 tolerated(0.37) probably_damaging(0.968) TCGA-EE-A29S-06 3 23996175 23996175 C T NR1D2 Missense_Mutation p.P55L 0.19 tolerated(0.65) benign(0) TCGA-EE-A29S-06 3 23996176 23996176 C T NR1D2 Silent p.P55P 0.18 TCGA-EE-A29S-06 3 2613165 2613165 C T CNTN4 5'UTR 0.15 TCGA-EE-A29S-06 3 31789438 31789438 G A OSBPL10 Nonsense_Mutation p.Q302* 0.53 TCGA-EE-A29S-06 3 31789439 31789439 G A OSBPL10 Silent p.H301H 0.52 TCGA-EE-A29S-06 3 33686776 33686776 T C CLASP2 Intron 0.29 TCGA-EE-A29S-06 3 35770971 35770971 C T ARPP21 Missense_Mutation p.P434S 0.25 deleterious(0.03) benign(0.139) TCGA-EE-A29S-06 3 36759525 36759525 G A DCLK3 Missense_Mutation p.P577S 0.19 deleterious(0) probably_damaging(0.963) TCGA-EE-A29S-06 3 36873232 36873232 C T TRANK1 Silent p.V2570V 0.23 TCGA-EE-A29S-06 3 36896829 36896829 G A TRANK1 Missense_Mutation p.L1418F 0.23 tolerated(0.11) probably_damaging(0.98) TCGA-EE-A29S-06 3 38628984 38628984 C T SCN5A Nonsense_Mutation p.W781* 0.16 TCGA-EE-A29S-06 3 38671912 38671912 G A SCN5A Silent p.I94I 0.55 TCGA-EE-A29S-06 3 38768199 38768199 G A SCN10A Silent p.V995V 0.39 TCGA-EE-A29S-06 3 38770119 38770119 C T SCN10A Missense_Mutation p.E852K 0.21 deleterious(0) probably_damaging(0.982) TCGA-EE-A29S-06 3 38802185 38802185 C T SCN10A Missense_Mutation p.G313R 0.28 tolerated(0.05) probably_damaging(0.983) TCGA-EE-A29S-06 3 39129711 39129711 C T WDR48 Missense_Mutation p.R523C 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 3 40231347 40231347 G A MYRIP Missense_Mutation p.G353E 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 3 42906432 42906432 C T ACKR2 Silent p.I146I 0.34 TCGA-EE-A29S-06 3 46717853 46717853 G A ALS2CL Missense_Mutation p.R690W 0.28 deleterious(0) possibly_damaging(0.587) TCGA-EE-A29S-06 3 46717854 46717854 G A ALS2CL Silent p.L689L 0.27 TCGA-EE-A29S-06 3 47747945 47747945 G A SMARCC1 Missense_Mutation p.P332S 0.36 tolerated(0.28) benign(0.041) TCGA-EE-A29S-06 3 48608554 48608554 G A COL7A1 Missense_Mutation p.P2382S 0.27 benign(0.127) TCGA-EE-A29S-06 3 48687946 48687946 G A CELSR3 Silent p.L2147L 0.22 TCGA-EE-A29S-06 3 49924732 49924732 G A MST1R 3'UTR 0.34 TCGA-EE-A29S-06 3 51418498 51418498 C T DOCK3 Silent p.I1867I 0.29 TCGA-EE-A29S-06 3 51994267 51994267 G A PCBP4 Missense_Mutation p.P109S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29S-06 3 52366264 52366264 C T DNAH1 Silent p.A380A 0.30 TCGA-EE-A29S-06 3 53778782 53778782 C T CACNA1D Silent p.S998S 0.36 TCGA-EE-A29S-06 3 54615852 54615852 T C CACNA2D3 Missense_Mutation p.V304A 0.38 deleterious(0) probably_damaging(0.975) TCGA-EE-A29S-06 3 54919307 54919307 G A CACNA2D3 Splice_Site p.X638_splice 0.39 TCGA-EE-A29S-06 3 58154232 58154232 G A FLNB Missense_Mutation p.E2453K 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A29S-06 3 62357802 62357802 C T FEZF2 Missense_Mutation p.E248K 0.38 deleterious(0.03) possibly_damaging(0.636) TCGA-EE-A29S-06 3 64184508 64184508 A C PRICKLE2 Missense_Mutation p.C32W 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 3 66433745 66433745 C T LRIG1 Missense_Mutation p.G718R 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 3 73433561 73433561 C T PDZRN3 Nonsense_Mutation p.W719* 0.28 TCGA-EE-A29S-06 3 75472101 75472101 G A FAM86DP RNA 0.28 TCGA-EE-A29S-06 3 77629185 77629185 C T ROBO2 Missense_Mutation p.P822S 0.33 deleterious(0.02) possibly_damaging(0.876) TCGA-EE-A29S-06 3 88189574 88189574 A T ZNF654 Nonsense_Mutation p.K372* 0.23 TCGA-EE-A29S-06 3 97466357 97466357 G A EPHA6 Silent p.K1073K 0.33 TCGA-EE-A29S-06 3 97726706 97726706 C T GABRR3 Intron 0.38 TCGA-EE-A29S-06 3 98073564 98073564 G A OR5K4 Silent p.L289L 0.26 TCGA-EE-A29S-06 3 98110314 98110314 G A OR5K3 Missense_Mutation p.D269N 0.23 deleterious(0.05) benign(0.4) TCGA-EE-A29S-06 3 98189268 98189268 C T OR5K1 Missense_Mutation p.P283L 0.23 deleterious(0.01) possibly_damaging(0.846) TCGA-EE-A29S-06 3 98241637 98241637 G A CLDND1 Intron 0.32 TCGA-EE-A29S-06 3 9984504 9984504 T C CRELD1 Silent p.D247D 0.25 TCGA-EE-A29S-06 4 100273856 100273856 C T ADH1C 5'UTR 0.27 TCGA-EE-A29S-06 4 100844269 100844269 C T DNAJB14 Missense_Mutation p.A127T 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 4 106158304 106158304 A G TET2 Missense_Mutation p.T1069A 0.38 tolerated(0.1) benign(0.005) TCGA-EE-A29S-06 4 111431465 111431465 C T ENPEP Missense_Mutation p.S420F 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 4 111474532 111474532 C T ENPEP Nonsense_Mutation p.R855* 0.31 TCGA-EE-A29S-06 4 113475032 113475032 C T C4orf21 Missense_Mutation p.E1769K 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A29S-06 4 115858593 115858593 G A NDST4 Missense_Mutation p.H430Y 0.35 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A29S-06 4 115997241 115997241 T C NDST4 Missense_Mutation p.T318A 0.47 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A29S-06 4 119459056 119459056 G A CEP170P1 RNA 0.30 TCGA-EE-A29S-06 4 122825578 122825578 T A TRPC3 Missense_Mutation p.N718Y 0.33 tolerated(0.87) probably_damaging(0.943) TCGA-EE-A29S-06 4 123207914 123207914 G A KIAA1109 Missense_Mutation p.G3086R 0.30 possibly_damaging(0.894) TCGA-EE-A29S-06 4 124235250 124235250 C T SPATA5 3'UTR 0.29 TCGA-EE-A29S-06 4 126370046 126370046 A G FAT4 Silent p.Q2625Q 0.41 TCGA-EE-A29S-06 4 126412940 126412940 C T FAT4 3'UTR 0.35 TCGA-EE-A29S-06 4 138452857 138452857 T C PCDH18 Missense_Mutation p.D129G 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 4 141543292 141543292 G A TBC1D9 3'UTR 0.37 TCGA-EE-A29S-06 4 146824293 146824293 G A ZNF827 Missense_Mutation p.P40S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29S-06 4 151749390 151749390 G A LRBA Missense_Mutation p.L1705F 0.33 tolerated_low_confidence(0.25) possibly_damaging(0.779) TCGA-EE-A29S-06 4 155219741 155219741 C T DCHS2 Missense_Mutation p.G1454R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 4 155507290 155507290 C T FGA Missense_Mutation p.E431K 0.34 deleterious(0.03) benign(0.351) TCGA-EE-A29S-06 4 158257857 158257857 C T GRIA2 Missense_Mutation p.S601F 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.44 TCGA-EE-A29S-06 4 162463792 162463792 T C FSTL5 Missense_Mutation p.T357A 0.33 tolerated(0.83) probably_damaging(0.977) TCGA-EE-A29S-06 4 164393819 164393819 C T TKTL2 Silent p.R356R 0.31 TCGA-EE-A29S-06 4 16513650 16513650 C T LDB2 Silent p.L231L 0.35 TCGA-EE-A29S-06 4 167983649 167983649 C T SPOCK3 Missense_Mutation p.D80N 0.27 tolerated(0.12) benign(0.035) TCGA-EE-A29S-06 4 169146808 169146808 G A DDX60 Missense_Mutation p.P1518L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 4 169176882 169176882 G A DDX60 Silent p.S1179S 0.26 TCGA-EE-A29S-06 4 169305791 169305791 C G DDX60L Missense_Mutation p.G1363A 0.15 tolerated(1) benign(0.006) TCGA-EE-A29S-06 4 169305793 169305793 C T DDX60L Silent p.K1362K 0.17 TCGA-EE-A29S-06 4 169589389 169589389 C T PALLD Silent p.I319I 0.35 TCGA-EE-A29S-06 4 183600989 183600989 G A TENM3 Silent p.G499G 0.32 TCGA-EE-A29S-06 4 183672970 183672970 G A TENM3 Missense_Mutation p.R1216K 0.34 tolerated(1) benign(0.003) TCGA-EE-A29S-06 4 183694705 183694705 C T TENM3 Missense_Mutation p.A1658V 0.32 tolerated(0.14) possibly_damaging(0.739) TCGA-EE-A29S-06 4 186083970 186083970 G A KIAA1430 Silent p.V527V 0.24 TCGA-EE-A29S-06 4 186545621 186545621 G A SORBS2 Missense_Mutation p.S417F 0.31 deleterious(0) probably_damaging(0.929) TCGA-EE-A29S-06 4 189020158 189020158 G A TRIML2 Intron 0.47 TCGA-EE-A29S-06 4 20493392 20493392 T C SLIT2 Missense_Mutation p.S262P 0.32 tolerated(0.1) benign(0.362) TCGA-EE-A29S-06 4 20620617 20620617 G A SLIT2 Silent p.T1525T 0.26 TCGA-EE-A29S-06 4 2241913 2241913 A C HAUS3 Missense_Mutation p.I254S 0.27 tolerated(0.3) benign(0.016) TCGA-EE-A29S-06 4 2826382 2826382 C T SH3BP2 Silent p.F151F 0.32 TCGA-EE-A29S-06 4 38775969 38775969 C T TLR10 Missense_Mutation p.E415K 0.24 tolerated(0.34) benign(0.025) TCGA-EE-A29S-06 4 38829909 38829909 C T TLR6 Missense_Mutation p.G396S 0.36 tolerated(1) benign(0.001) TCGA-EE-A29S-06 4 38937390 38937390 G A FAM114A1 Silent p.T505T 0.29 TCGA-EE-A29S-06 4 39482951 39482951 G A LIAS 3'Flank 0.39 TCGA-EE-A29S-06 4 40439812 40439812 G A RBM47 Missense_Mutation p.P367S 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29S-06 4 41648682 41648682 C T LIMCH1 Silent p.F479F 0.31 TCGA-EE-A29S-06 4 42895383 42895383 G A GRXCR1 Missense_Mutation p.E34K 0.28 tolerated(0.48) benign(0) TCGA-EE-A29S-06 4 46060311 46060311 G A GABRG1 Missense_Mutation p.P280L 0.30 deleterious(0) possibly_damaging(0.526) TCGA-EE-A29S-06 4 46067502 46067502 C T GABRG1 Missense_Mutation p.G141R 0.32 deleterious(0.01) possibly_damaging(0.671) TCGA-EE-A29S-06 4 47602343 47602343 C T CORIN Missense_Mutation p.G945E 0.26 deleterious(0.04) probably_damaging(1) TCGA-EE-A29S-06 4 47887673 47887673 G A NFXL1 Nonsense_Mutation p.R556* 0.33 TCGA-EE-A29S-06 4 48147213 48147213 C T TEC Silent p.L451L 0.33 TCGA-EE-A29S-06 4 515031 515031 C T PIGG Missense_Mutation p.S434L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 4 53494304 53494304 G A USP46 Silent p.S48S 0.31 TCGA-EE-A29S-06 4 6303832 6303832 C T WFS1 Silent p.F770F 0.31 TCGA-EE-A29S-06 4 657610 657610 C T PDE6B Missense_Mutation p.H658Y 0.35 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29S-06 4 70455313 70455313 G A UGT2A1 Missense_Mutation p.P620L 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A29S-06 4 74269991 74269991 C T ALB 5'UTR 0.41 TCGA-EE-A29S-06 4 75482135 75482135 C T AREGB Missense_Mutation p.S64F 0.74 deleterious(0) benign(0.273) TCGA-EE-A29S-06 4 76808004 76808004 C T PPEF2 Splice_Site p.X193_splice 0.27 TCGA-EE-A29S-06 4 77652048 77652048 G A SHROOM3 Missense_Mutation p.G183S 0.27 deleterious(0.01) benign(0.32) TCGA-EE-A29S-06 4 79396720 79396720 C T FRAS1 Missense_Mutation p.S2604F 0.33 benign(0.049) TCGA-EE-A29S-06 4 81967371 81967371 C T BMP3 Missense_Mutation p.P266S 0.37 tolerated(0.23) benign(0.15) TCGA-EE-A29S-06 4 86915979 86915979 C T ARHGAP24 Missense_Mutation p.S391F 0.35 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A29S-06 4 87028495 87028495 C T MAPK10 Missense_Mutation p.D83N 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A29S-06 4 88394924 88394924 C T SPARCL1 3'UTR 0.18 TCGA-EE-A29S-06 4 88533813 88533813 G A DSPP Missense_Mutation p.D159N 0.21 probably_damaging(0.981) TCGA-EE-A29S-06 4 88959629 88959629 C T PKD2 Missense_Mutation p.P357L 0.33 deleterious(0) possibly_damaging(0.801) TCGA-EE-A29S-06 4 91701608 91701608 G A CCSER1 Intron 0.28 TCGA-EE-A29S-06 4 94128555 94128555 G A GRID2 Missense_Mutation p.V246I 0.30 tolerated(0.12) possibly_damaging(0.696) TCGA-EE-A29S-06 5 106723429 106723429 G C EFNA5 Silent p.L154L 0.21 TCGA-EE-A29S-06 5 121409765 121409765 T C LOX Silent p.E326E 0.46 TCGA-EE-A29S-06 5 128362867 128362867 C T SLC27A6 Missense_Mutation p.P433S 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 5 13751222 13751222 G A DNAH5 Nonsense_Mutation p.Q3726* 0.31 TCGA-EE-A29S-06 5 13788921 13788921 C T DNAH5 Missense_Mutation p.V2851I 0.24 benign(0.097) TCGA-EE-A29S-06 5 13793828 13793828 C T DNAH5 Missense_Mutation p.E2674K 0.24 possibly_damaging(0.621) TCGA-EE-A29S-06 5 13824398 13824398 C T DNAH5 Silent p.R2163R 0.31 TCGA-EE-A29S-06 5 140011761 140011761 G A CD14 Missense_Mutation p.P270S 0.56 tolerated(0.32) benign(0.018) TCGA-EE-A29S-06 5 140250551 140250551 C T PCDHA11 Silent p.F621F 0.50 TCGA-EE-A29S-06 5 140389655 140389655 C T PCDHAC1 3'UTR 0.49 TCGA-EE-A29S-06 5 140480552 140480552 C T PCDHB3 Nonsense_Mutation p.Q107* 0.45 TCGA-EE-A29S-06 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29S-06 5 140625667 140625667 C T PCDHB15 Missense_Mutation p.P174L 0.60 deleterious_low_confidence(0.03) benign(0.027) TCGA-EE-A29S-06 5 140625948 140625948 G A PCDHB15 Missense_Mutation p.D268N 0.59 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29S-06 5 140755706 140755706 G A PCDHGA6 Missense_Mutation p.D686N 0.45 tolerated_low_confidence(0.11) benign(0.006) TCGA-EE-A29S-06 5 140768543 140768543 T G PCDHGB4 Missense_Mutation p.I364M 0.53 deleterious(0) probably_damaging(0.961) TCGA-EE-A29S-06 5 140865109 140865109 C T PCDHGC4 Silent p.I123I 0.56 TCGA-EE-A29S-06 5 141028737 141028737 A G FCHSD1 Splice_Site p.X171_splice 0.60 TCGA-EE-A29S-06 5 148406772 148406772 G A SH3TC2 Silent p.L841L 0.49 TCGA-EE-A29S-06 5 153726693 153726693 T G GALNT10 Intron 0.71 TCGA-EE-A29S-06 5 156456629 156456629 C T HAVCR1 3'UTR 0.29 TCGA-EE-A29S-06 5 158140034 158140034 G A EBF1 Missense_Mutation p.S438L 0.50 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-EE-A29S-06 5 158140039 158140039 C T EBF1 Silent p.V436V 0.48 TCGA-EE-A29S-06 5 167420048 167420048 C T TENM2 Silent p.P349P 0.40 TCGA-EE-A29S-06 5 170883819 170883819 C T FGF18 3'UTR 0.48 TCGA-EE-A29S-06 5 177421205 177421205 C T PROP1 Missense_Mutation p.E82K 0.56 deleterious(0.01) possibly_damaging(0.672) TCGA-EE-A29S-06 5 180050958 180050958 C T FLT4 Missense_Mutation p.E509K 0.51 tolerated(0.09) probably_damaging(0.978) TCGA-EE-A29S-06 5 19544036 19544036 C T CDH18 Silent p.K444K 0.32 TCGA-EE-A29S-06 5 33576558 33576558 A T ADAMTS12 Missense_Mutation p.S1191R 0.26 tolerated(0.13) benign(0.004) TCGA-EE-A29S-06 5 33658435 33658435 C T ADAMTS12 Silent p.K348K 0.28 TCGA-EE-A29S-06 5 34007990 34007990 G C AMACR Silent p.R45R 0.31 TCGA-EE-A29S-06 5 34007991 34007991 C T AMACR Missense_Mutation p.R45H 0.33 tolerated(0.55) benign(0.003) TCGA-EE-A29S-06 5 35039544 35039544 G A AGXT2 Nonsense_Mutation p.Q83* 0.32 TCGA-EE-A29S-06 5 35641564 35641564 C T SPEF2 Missense_Mutation p.R65C 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 5 35867483 35867483 C T IL7R Silent p.F99F 0.25 TCGA-EE-A29S-06 5 35871172 35871172 C T IL7R Missense_Mutation p.P132S 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 5 36686427 36686427 C T SLC1A3 3'UTR 0.34 TCGA-EE-A29S-06 5 38527372 38527372 C T LIFR Silent p.E94E 0.32 TCGA-EE-A29S-06 5 38946587 38946587 A T RICTOR Missense_Mutation p.F1461Y 0.34 tolerated(0.36) benign(0.011) TCGA-EE-A29S-06 5 38946588 38946588 A G RICTOR Missense_Mutation p.F1461L 0.35 tolerated(0.15) benign(0.004) TCGA-EE-A29S-06 5 40937739 40937739 G A C7 Missense_Mutation p.D172N 0.41 deleterious(0) probably_damaging(0.98) TCGA-EE-A29S-06 5 40972530 40972530 G A C7 Silent p.L636L 0.40 TCGA-EE-A29S-06 5 41015499 41015499 G A MROH2B Missense_Mutation p.S989F 0.30 tolerated(0.05) possibly_damaging(0.452) TCGA-EE-A29S-06 5 41313799 41313799 C T PLCXD3 Missense_Mutation p.D296N 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 5 54460100 54460100 C T GPX8 3'UTR 0.17 TCGA-EE-A29S-06 5 61779984 61779984 G A IPO11 Missense_Mutation p.G430D 0.24 tolerated(0.27) benign(0.035) TCGA-EE-A29S-06 5 64484030 64484030 C T ADAMTS6 Nonsense_Mutation p.W908* 0.28 TCGA-EE-A29S-06 5 6611115 6611115 G A NSUN2 Silent p.F393F 0.32 TCGA-EE-A29S-06 5 66461347 66461347 G A MAST4 Missense_Mutation p.D2114N 0.41 possibly_damaging(0.777) TCGA-EE-A29S-06 5 6668421 6668421 C T SRD5A1 3'UTR 0.24 TCGA-EE-A29S-06 5 7698484 7698513 TAAAGTAAGTGGACTGCTTAGTAAGCATTT - ADCY2 Splice_Site p.X369_splice 0.28 TCGA-EE-A29S-06 5 79029209 79029209 G A CMYA5 Missense_Mutation p.E1541K 0.28 benign(0.099) TCGA-EE-A29S-06 5 82838005 82838005 C T VCAN Silent p.S3061S 0.35 TCGA-EE-A29S-06 5 82948416 82948416 C T HAPLN1 Missense_Mutation p.G110S 0.28 deleterious(0) possibly_damaging(0.832) TCGA-EE-A29S-06 5 89948267 89948267 G A GPR98 Missense_Mutation p.G1174E 0.41 probably_damaging(0.972) TCGA-EE-A29S-06 5 901523 901523 G A TRIP13 Nonsense_Mutation p.W171* 0.35 TCGA-EE-A29S-06 5 94731827 94731827 C T FAM81B Missense_Mutation p.P81S 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.895) TCGA-EE-A29S-06 6 100390835 100390835 C T MCHR2 Missense_Mutation p.D193N 0.57 deleterious(0.03) benign(0.045) TCGA-EE-A29S-06 6 110714539 110714539 C T DDO Silent p.K183K 0.36 TCGA-EE-A29S-06 6 117113719 117113719 G A GPRC6A Silent p.L789L 0.58 TCGA-EE-A29S-06 6 11723584 11723584 C T ADTRP Nonsense_Mutation p.W237* 0.18 TCGA-EE-A29S-06 6 130476170 130476170 C T SAMD3 Missense_Mutation p.E275K 0.47 tolerated(0.08) benign(0.009) TCGA-EE-A29S-06 6 133032871 133032871 C T VNN1 Nonsense_Mutation p.W106* 0.48 TCGA-EE-A29S-06 6 133052561 133052561 C T VNN3 Intron 0.53 TCGA-EE-A29S-06 6 135513630 135513630 C T MYB Silent p.L232L 0.38 TCGA-EE-A29S-06 6 135513631 135513631 C T MYB Missense_Mutation p.P233S 0.38 tolerated(0.1) benign(0.019) TCGA-EE-A29S-06 6 136597253 136597253 C T BCLAF1 Silent p.R470R 0.11 TCGA-EE-A29S-06 6 151939180 151939180 G A CCDC170 Silent p.L682L 0.53 TCGA-EE-A29S-06 6 152783811 152783811 A G SYNE1 Intron 0.15 TCGA-EE-A29S-06 6 153043050 153043050 G A MYCT1 Missense_Mutation p.G124R 0.47 tolerated(0.1) probably_damaging(1) TCGA-EE-A29S-06 6 154411105 154411105 G A OPRM1 Silent p.V238V 0.42 TCGA-EE-A29S-06 6 160560703 160560703 C T SLC22A1 Silent p.L360L 0.34 TCGA-EE-A29S-06 6 160875335 160875335 C G SLC22A3 3'Flank 0.45 TCGA-EE-A29S-06 6 16145341 16145341 A T MYLIP Silent p.S347S 0.27 TCGA-EE-A29S-06 6 167754049 167754049 G A TTLL2 Missense_Mutation p.G221R 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 6 22294707 22294707 G A PRL Silent p.D45D 0.28 TCGA-EE-A29S-06 6 24289098 24289098 G A DCDC2 Silent p.S247S 0.27 TCGA-EE-A29S-06 6 24302024 24302024 G A DCDC2 Missense_Mutation p.P159L 0.36 deleterious(0) probably_damaging(0.978) TCGA-EE-A29S-06 6 24480149 24480149 G A GPLD1 Silent p.I64I 0.19 TCGA-EE-A29S-06 6 24515496 24515496 G A ALDH5A1 Silent p.L289L 0.29 TCGA-EE-A29S-06 6 24596459 24596459 C T KIAA0319 Nonsense_Mutation p.W148* 0.21 TCGA-EE-A29S-06 6 26184259 26184259 C T HIST1H2BE Missense_Mutation p.S79F 0.49 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EE-A29S-06 6 27792213 27792213 G A HIST1H4J Silent p.%3D 0.22 TCGA-EE-A29S-06 6 28329233 28329233 C T ZKSCAN3 Missense_Mutation p.P179S 0.19 tolerated(0.84) benign(0.005) TCGA-EE-A29S-06 6 28501787 28501787 C T GPX5 Missense_Mutation p.S170F 0.24 tolerated(1) benign(0.001) TCGA-EE-A29S-06 6 29364748 29364748 C T OR12D2 Missense_Mutation p.S91F 0.23 deleterious(0) benign(0.295) TCGA-EE-A29S-06 6 30128312 30128312 G A TRIM10 Silent p.F108F 0.26 TCGA-EE-A29S-06 6 30166830 30166830 G A TRIM26 Silent p.S17S 0.18 TCGA-EE-A29S-06 6 30899847 30899847 G A SFTA2 Silent p.L9L 0.21 TCGA-EE-A29S-06 6 31583122 31583122 G A AIF1 Missense_Mutation p.D6N 0.15 tolerated(0.69) benign(0.001) TCGA-EE-A29S-06 6 31594848 31594848 C T PRRC2A Missense_Mutation p.P388L 0.25 unknown(0) TCGA-EE-A29S-06 6 31603424 31603424 C T PRRC2A Silent p.S1813S 0.48 TCGA-EE-A29S-06 6 31778222 31778222 C T HSPA1L Missense_Mutation p.G510S 0.27 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A29S-06 6 31901496 31901496 G A C2 Silent p.T184T 0.26 TCGA-EE-A29S-06 6 31905098 31905098 C T CFB Missense_Mutation p.H178Y 0.49 deleterious(0) benign(0.207) TCGA-EE-A29S-06 6 31907014 31907014 C G CFB Missense_Mutation p.S226C 0.24 deleterious(0.03) probably_damaging(0.96) TCGA-EE-A29S-06 6 31912612 31912612 G A CFB Missense_Mutation p.D518N 0.19 deleterious(0) possibly_damaging(0.485) TCGA-EE-A29S-06 6 31918679 31918679 C T CFB Nonsense_Mutation p.R1107* 0.24 TCGA-EE-A29S-06 6 31922493 31922493 C T NELFE Missense_Mutation p.R194K 0.25 tolerated_low_confidence(0.44) unknown(0) TCGA-EE-A29S-06 6 31926863 31926863 G A SKIV2L 5'UTR 0.55 TCGA-EE-A29S-06 6 32053871 32053871 C T TNXB Missense_Mutation p.G935E 0.22 possibly_damaging(0.642) TCGA-EE-A29S-06 6 32410361 32410361 T C HLA-DRA Silent p.F73F 0.21 TCGA-EE-A29S-06 6 33133762 33133762 C T COL11A2 Splice_Site p.X1391_splice 0.14 TCGA-EE-A29S-06 6 33264531 33264531 G A RGL2 Missense_Mutation p.S88F 0.22 tolerated(0.36) benign(0.001) TCGA-EE-A29S-06 6 33373280 33373280 C T KIFC1 Missense_Mutation p.R470W 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 6 35200690 35200690 G A SCUBE3 Missense_Mutation p.G178E 0.21 deleterious(0) possibly_damaging(0.783) TCGA-EE-A29S-06 6 35554774 35554774 C T FKBP5 Intron 0.31 TCGA-EE-A29S-06 6 35987388 35987388 C T SLC26A8 Missense_Mutation p.E33K 0.60 deleterious(0.02) probably_damaging(0.969) TCGA-EE-A29S-06 6 36922597 36922597 A C PI16 Missense_Mutation p.T21P 0.19 deleterious(0.01) benign(0.36) TCGA-EE-A29S-06 6 37626190 37626190 C T MDGA1 Silent p.R71R 0.26 TCGA-EE-A29S-06 6 38770971 38770971 G A DNAH8 Nonsense_Mutation p.W756* 0.44 TCGA-EE-A29S-06 6 38770972 38770972 G C DNAH8 Missense_Mutation p.W756C 0.43 benign(0) TCGA-EE-A29S-06 6 38891046 38891046 A G DNAH8 Intron 0.26 TCGA-EE-A29S-06 6 38891805 38891805 C T DNAH8 Missense_Mutation p.S3393F 0.18 probably_damaging(0.998) TCGA-EE-A29S-06 6 40400163 40400163 G A LRFN2 Silent p.P230P 0.21 TCGA-EE-A29S-06 6 4099400 4099400 G A C6orf201 Silent p.T84T 0.43 TCGA-EE-A29S-06 6 41165971 41165971 C T TREML2 Silent p.Q84Q 0.28 TCGA-EE-A29S-06 6 42237006 42237006 C T TRERF1 Nonsense_Mutation p.W108* 0.48 TCGA-EE-A29S-06 6 43305585 43305585 G A ZNF318 Missense_Mutation p.P2051S 0.51 benign(0.015) TCGA-EE-A29S-06 6 43413384 43413384 C T ABCC10 Silent p.N1026N 0.20 TCGA-EE-A29S-06 6 46107600 46107600 T C ENPP4 Missense_Mutation p.Y94H 0.27 deleterious(0) probably_damaging(0.981) TCGA-EE-A29S-06 6 46135864 46135864 C T ENPP5 Missense_Mutation p.V46I 0.19 tolerated(0.06) possibly_damaging(0.672) TCGA-EE-A29S-06 6 46656732 46656732 T C TDRD6 Silent p.G289G 0.22 TCGA-EE-A29S-06 6 49754784 49754784 C T PGK2 Silent p.R39R 0.26 TCGA-EE-A29S-06 6 52054100 52054100 G A IL17A 3'UTR 0.43 TCGA-EE-A29S-06 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.23 deleterious(0) probably_damaging(0.91) TCGA-EE-A29S-06 6 55216070 55216070 C T GFRAL Silent p.S130S 0.36 TCGA-EE-A29S-06 6 56473633 56473633 T A DST Intron 0.41 TCGA-EE-A29S-06 6 62604695 62604695 C T KHDRBS2 Missense_Mutation p.G219S 0.36 deleterious(0.05) benign(0.003) TCGA-EE-A29S-06 6 71010049 71010049 G A COL9A1 Silent p.L43L 0.26 TCGA-EE-A29S-06 6 7373626 7373626 C T CAGE1 Missense_Mutation p.E476K 0.50 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A29S-06 6 73751659 73751659 G A KCNQ5 Missense_Mutation p.E164K 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 6 73787168 73787168 G A KCNQ5 Missense_Mutation p.R247Q 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 6 73935127 73935127 G A KHDC1L Missense_Mutation p.A2V 0.38 tolerated_low_confidence(0.15) benign(0.064) TCGA-EE-A29S-06 6 75950054 75950054 G A COX7A2 Silent p.A84A 0.33 TCGA-EE-A29S-06 6 76022716 76022716 G A FILIP1 Silent p.T944T 0.28 TCGA-EE-A29S-06 6 76751653 76751653 C T IMPG1 Missense_Mutation p.M86I 0.44 tolerated(0.08) benign(0.139) TCGA-EE-A29S-06 6 84311139 84311139 G A SNAP91 Missense_Mutation p.S392F 0.47 deleterious(0.03) unknown(0) TCGA-EE-A29S-06 7 100033919 100033919 C T PPP1R35 Missense_Mutation p.E27K 0.37 deleterious(0.02) benign(0.118) TCGA-EE-A29S-06 7 100087120 100087120 G C NYAP1 Missense_Mutation p.E592D 0.32 tolerated(0.34) benign(0.004) TCGA-EE-A29S-06 7 100087124 100087124 G A NYAP1 Missense_Mutation p.G594R 0.36 deleterious(0.02) possibly_damaging(0.854) TCGA-EE-A29S-06 7 100683774 100683774 C T MUC17 Missense_Mutation p.S3026F 0.36 probably_damaging(0.987) TCGA-EE-A29S-06 7 100684479 100684479 C T MUC17 Missense_Mutation p.S3261L 0.34 probably_damaging(0.942) TCGA-EE-A29S-06 7 102523914 102523914 C T FBXL13 Missense_Mutation p.G409E 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A29S-06 7 103338393 103338393 G A RELN Silent p.I350I 0.30 TCGA-EE-A29S-06 7 106871079 106871079 G A COG5 Missense_Mutation p.R748W 0.33 deleterious(0) probably_damaging(0.977) TCGA-EE-A29S-06 7 116859203 116859203 G A ST7 Missense_Mutation p.E491K 0.28 deleterious(0.02) benign(0.078) TCGA-EE-A29S-06 7 117149167 117149167 A T CFTR Missense_Mutation p.M82L 0.33 tolerated(1) benign(0.014) TCGA-EE-A29S-06 7 117232288 117232288 G A CFTR Silent p.Q689Q 0.21 TCGA-EE-A29S-06 7 122342428 122342428 C T RNF148 Missense_Mutation p.G126E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 7 123150013 123150013 C T IQUB Silent p.K158K 0.31 TCGA-EE-A29S-06 7 123254628 123254628 C T ASB15 Silent p.S24S 0.28 TCGA-EE-A29S-06 7 1273286 1273286 C G UNCX Silent p.R135R 0.29 TCGA-EE-A29S-06 7 128490877 128490877 G A FLNC Missense_Mutation p.G1807R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 7 129856133 129856133 G A SSMEM1 Silent p.R186R 0.30 TCGA-EE-A29S-06 7 131908289 131908289 G A PLXNA4 Silent p.P698P 0.28 TCGA-EE-A29S-06 7 135047761 135047761 G A CNOT4 Missense_Mutation p.P673L 0.34 deleterious_low_confidence(0.01) benign(0.178) TCGA-EE-A29S-06 7 138603646 138603646 G A KIAA1549 Silent p.I242I 0.31 TCGA-EE-A29S-06 7 141490887 141490887 C T TAS2R5 Silent p.I242I 0.32 TCGA-EE-A29S-06 7 141635652 141635652 C T CLEC5A Missense_Mutation p.G103R 0.39 tolerated(0.14) benign(0.33) TCGA-EE-A29S-06 7 141673373 141673373 C T TAS2R38 Silent p.V39V 0.34 TCGA-EE-A29S-06 7 142161994 142161994 G A TRBV6-6 Missense_Mutation p.P94L 0.36 tolerated(0.22) benign(0.016) TCGA-EE-A29S-06 7 142239685 142239685 G A TRBV9 Silent p.L65L 0.44 TCGA-EE-A29S-06 7 142428720 142428720 C G TRBV28 Missense_Mutation p.S27W 0.42 deleterious(0) probably_damaging(0.942) TCGA-EE-A29S-06 7 143826882 143826882 G A OR2A14 Missense_Mutation p.R226K 0.33 tolerated(0.81) benign(0.027) TCGA-EE-A29S-06 7 147869354 147869354 G A CNTNAP2 Missense_Mutation p.G932S 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A29S-06 7 147914405 147914405 G A CNTNAP2 Silent p.G1012G 0.36 TCGA-EE-A29S-06 7 147914416 147914416 G T CNTNAP2 Missense_Mutation p.R1016L 0.34 tolerated(0.11) benign(0.074) TCGA-EE-A29S-06 7 148769495 148769495 G A ZNF786 Silent p.S123S 0.28 TCGA-EE-A29S-06 7 149490701 149490701 C T SSPO RNA 0.38 TCGA-EE-A29S-06 7 151699961 151699961 G A GALNTL5 Missense_Mutation p.G274E 0.36 deleterious(0.02) probably_damaging(1) TCGA-EE-A29S-06 7 154379691 154379691 C T DPP6 Intron 0.21 TCGA-EE-A29S-06 7 154863051 154863051 G A HTR5A Missense_Mutation p.E148K 0.32 tolerated(0.1) benign(0.064) TCGA-EE-A29S-06 7 154876070 154876070 C T HTR5A Missense_Mutation p.P316L 0.30 deleterious(0) probably_damaging(0.992) TCGA-EE-A29S-06 7 16502462 16502462 G A SOSTDC1 Missense_Mutation p.P111L 0.31 deleterious(0.02) possibly_damaging(0.69) TCGA-EE-A29S-06 7 18067448 18067448 C T PRPS1L1 5'UTR 0.45 TCGA-EE-A29S-06 7 18631203 18631203 G A HDAC9 Silent p.T160T 0.27 TCGA-EE-A29S-06 7 19765303 19765303 G A TMEM196 Missense_Mutation p.S98F 0.29 deleterious(0.02) possibly_damaging(0.683) TCGA-EE-A29S-06 7 20199780 20199780 C T MACC1 Nonsense_Mutation p.W68* 0.33 TCGA-EE-A29S-06 7 20449394 20449394 C T ITGB8 Missense_Mutation p.S727L 0.29 deleterious(0.02) benign(0.012) TCGA-EE-A29S-06 7 24690276 24690276 G A MPP6 Missense_Mutation p.G199E 0.26 tolerated(0.35) benign(0.327) TCGA-EE-A29S-06 7 24901284 24901284 G A OSBPL3 Silent p.T325T 0.38 TCGA-EE-A29S-06 7 27150097 27150097 G A HOXA3 Missense_Mutation p.P55S 0.22 tolerated(0.75) possibly_damaging(0.901) TCGA-EE-A29S-06 7 31378687 31378687 C T NEUROD6 Missense_Mutation p.E66K 0.32 tolerated(0.66) possibly_damaging(0.636) TCGA-EE-A29S-06 7 34182955 34182955 C T BMPER Missense_Mutation p.P620L 0.20 deleterious(0.02) possibly_damaging(0.647) TCGA-EE-A29S-06 7 35872491 35872491 A G SEPT7 Silent p.E51E 0.25 TCGA-EE-A29S-06 7 36194506 36194506 C T EEPD1 Silent p.I191I 0.25 TCGA-EE-A29S-06 7 43484698 43484698 G A HECW1 Missense_Mutation p.G643S 0.39 tolerated_low_confidence(1) benign(0.004) TCGA-EE-A29S-06 7 47869635 47869635 T C PKD1L1 Intron 0.32 TCGA-EE-A29S-06 7 47921619 47921619 C T PKD1L1 Silent p.G1110G 0.28 TCGA-EE-A29S-06 7 48146552 48146552 G T UPP1 Silent p.G173G 0.33 TCGA-EE-A29S-06 7 55268881 55268881 G A EGFR Missense_Mutation p.G983R 0.34 deleterious(0.05) probably_damaging(0.967) TCGA-EE-A29S-06 7 63720629 63720629 G A ZNF679 Missense_Mutation p.E24K 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29S-06 7 64453052 64453052 G A ERV3-1 Missense_Mutation p.S118F 0.37 deleterious(0) possibly_damaging(0.865) TCGA-EE-A29S-06 7 73245472 73245472 G A CLDN4 5'UTR 0.40 TCGA-EE-A29S-06 7 7413017 7413017 G A COL28A1 Silent p.I840I 0.34 TCGA-EE-A29S-06 7 74211487 74211487 T C GTF2IRD2 Silent p.L788L 0.36 TCGA-EE-A29S-06 7 81598265 81598265 G A CACNA2D1 Missense_Mutation p.S778L 0.26 tolerated(0.17) benign(0.245) TCGA-EE-A29S-06 7 82584101 82584101 C T PCLO Silent p.R2056R 0.22 TCGA-EE-A29S-06 7 82997226 82997226 G A SEMA3E Silent p.I668I 0.35 TCGA-EE-A29S-06 7 86416133 86416133 C T GRM3 Missense_Mutation p.P342L 0.22 tolerated(1) possibly_damaging(0.905) TCGA-EE-A29S-06 7 86493745 86493745 G A GRM3 3'UTR 0.40 TCGA-EE-A29S-06 7 86539224 86539224 C T KIAA1324L Missense_Mutation p.A755T 0.45 tolerated(0.34) benign(0.042) TCGA-EE-A29S-06 7 87537077 87537077 C G DBF4 Missense_Mutation p.H542D 0.31 tolerated(0.08) benign(0.007) TCGA-EE-A29S-06 7 91503289 91503294 CAGAAC - MTERF In_Frame_Del p.V272_L273del 0.24 TCGA-EE-A29S-06 7 94052408 94052408 C T COL1A2 Missense_Mutation p.P848L 0.28 unknown(0) TCGA-EE-A29S-06 7 98586570 98586570 C T TRRAP Missense_Mutation p.S3195L 0.18 possibly_damaging(0.835) TCGA-EE-A29S-06 7 98652473 98652473 C T SMURF1 Missense_Mutation p.R140Q 0.40 tolerated(0.13) benign(0.033) TCGA-EE-A29S-06 7 99367813 99367813 C T CYP3A4 Missense_Mutation p.E122K 0.16 tolerated(0.44) benign(0.017) TCGA-EE-A29S-06 7 99757739 99757739 G A GAL3ST4 Missense_Mutation p.R425C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 7 99808749 99808749 C T STAG3 Silent p.P1118P 0.27 TCGA-EE-A29S-06 8 10555383 10555383 G A C8orf74 Silent p.T172T 0.31 TCGA-EE-A29S-06 8 108264223 108264223 C T ANGPT1 Missense_Mutation p.G453S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 8 108315580 108315580 C T ANGPT1 Missense_Mutation p.G275E 0.23 tolerated(1) benign(0.021) TCGA-EE-A29S-06 8 110457331 110457331 G A PKHD1L1 Missense_Mutation p.E1745K 0.40 tolerated(0.06) benign(0.071) TCGA-EE-A29S-06 8 110477153 110477153 G A PKHD1L1 Missense_Mutation p.E2698K 0.33 deleterious(0.02) possibly_damaging(0.632) TCGA-EE-A29S-06 8 110477252 110477252 C T PKHD1L1 Missense_Mutation p.P2731S 0.32 deleterious(0) probably_damaging(0.988) TCGA-EE-A29S-06 8 119634105 119634105 C T SAMD12 5'UTR 0.32 TCGA-EE-A29S-06 8 126073378 126073378 A G KIAA0196 Silent p.D489D 0.29 TCGA-EE-A29S-06 8 131916126 131916126 G A ADCY8 Silent p.I601I 0.28 TCGA-EE-A29S-06 8 133175741 133175741 C T KCNQ3 Silent p.R412R 0.57 TCGA-EE-A29S-06 8 143998537 143998537 C T CYP11B2 Missense_Mutation p.M111I 0.26 deleterious(0.05) benign(0.021) TCGA-EE-A29S-06 8 145756229 145756229 C T ARHGAP39 Missense_Mutation p.E1003K 0.59 deleterious(0) probably_damaging(0.975) TCGA-EE-A29S-06 8 2048802 2048802 G A MYOM2 Nonsense_Mutation p.W859* 0.38 TCGA-EE-A29S-06 8 2092846 2092846 C T MYOM2 Missense_Mutation p.P1447S 0.36 tolerated(0.15) benign(0.016) TCGA-EE-A29S-06 8 21986139 21986139 G A HR Missense_Mutation p.T182I 0.38 deleterious(0) benign(0.021) TCGA-EE-A29S-06 8 23225654 23225654 G A LOXL2 Missense_Mutation p.R71W 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 8 23225655 23225655 G A LOXL2 Silent p.G70G 0.27 TCGA-EE-A29S-06 8 23538865 23538865 C T NKX3-1 Missense_Mutation p.E192K 0.37 tolerated(0.08) possibly_damaging(0.787) TCGA-EE-A29S-06 8 24177770 24177770 C T ADAM28 Nonsense_Mutation p.Q200* 0.31 TCGA-EE-A29S-06 8 24324458 24324458 C T ADAM7 Missense_Mutation p.T179I 0.33 tolerated(0.47) benign(0.007) TCGA-EE-A29S-06 8 24775422 24775422 C T NEFM Missense_Mutation p.S685L 0.37 deleterious(0) possibly_damaging(0.758) TCGA-EE-A29S-06 8 26248922 26248922 A T BNIP3L Missense_Mutation p.R88S 0.19 tolerated(0.36) benign(0.207) TCGA-EE-A29S-06 8 27823961 27823961 G A SCARA5 Silent p.L71L 0.31 TCGA-EE-A29S-06 8 2836311 2836311 A T CSMD1 Missense_Mutation p.S2797T 0.30 benign(0.06) TCGA-EE-A29S-06 8 28633369 28633369 G A INTS9 Silent p.I490I 0.39 TCGA-EE-A29S-06 8 2965279 2965279 G A CSMD1 Nonsense_Mutation p.Q2266* 0.28 TCGA-EE-A29S-06 8 30703646 30703646 C T TEX15 Missense_Mutation p.R963Q 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A29S-06 8 35406874 35406874 C T UNC5D Silent p.F56F 0.50 TCGA-EE-A29S-06 8 35608272 35608272 C T UNC5D Missense_Mutation p.S703F 0.26 deleterious(0.01) benign(0.081) TCGA-EE-A29S-06 8 37734669 37734669 C T RAB11FIP1 Missense_Mutation p.D258N 0.30 tolerated(0.38) benign(0.157) TCGA-EE-A29S-06 8 38285945 38285945 G A FGFR1 Missense_Mutation p.P156S 0.24 tolerated(0.66) benign(0.209) TCGA-EE-A29S-06 8 39468107 39468107 G A ADAM18 Missense_Mutation p.R135K 0.26 tolerated(0.97) benign(0.022) TCGA-EE-A29S-06 8 39535009 39535009 G A ADAM18 Missense_Mutation p.E529K 0.27 deleterious(0.01) benign(0.124) TCGA-EE-A29S-06 8 39613368 39613368 C T ADAM2 Missense_Mutation p.R559K 0.33 tolerated(0.28) benign(0.003) TCGA-EE-A29S-06 8 39847324 39847324 C T IDO2 Nonsense_Mutation p.Q225* 0.28 TCGA-EE-A29S-06 8 41387742 41387742 C T GINS4 Silent p.F7F 0.31 TCGA-EE-A29S-06 8 41550298 41550298 G A ANK1 Silent p.F1283F 0.28 TCGA-EE-A29S-06 8 53049210 53049210 C T ST18 Missense_Mutation p.G747E 0.30 deleterious(0) probably_damaging(0.989) TCGA-EE-A29S-06 8 57353646 57353646 G A PENK 3'UTR 0.27 TCGA-EE-A29S-06 8 57353941 57353941 C T PENK Missense_Mutation p.G232S 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 8 6371361 6371361 A C ANGPT2 Missense_Mutation p.F346C 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 8 65527628 65527628 G A CYP7B1 Missense_Mutation p.P338S 0.33 tolerated(0.56) benign(0.003) TCGA-EE-A29S-06 8 68007610 68007610 C T CSPP1 Missense_Mutation p.S198L 0.30 tolerated(0.19) benign(0.018) TCGA-EE-A29S-06 8 68536449 68536449 C T CPA6 Missense_Mutation p.E52K 0.20 deleterious(0.02) possibly_damaging(0.458) TCGA-EE-A29S-06 8 68931862 68931862 G A PREX2 Missense_Mutation p.E98K 0.36 tolerated(0.05) benign(0.195) TCGA-EE-A29S-06 8 73849889 73849889 C T KCNB2 Missense_Mutation p.P767S 0.37 tolerated_low_confidence(0.5) benign(0.001) TCGA-EE-A29S-06 8 77767876 77767876 C T ZFHX4 Missense_Mutation p.P2907S 0.22 probably_damaging(0.994) TCGA-EE-A29S-06 8 79652309 79652309 C T IL7 Missense_Mutation p.M52I 0.35 tolerated(0.3) benign(0.284) TCGA-EE-A29S-06 8 82441671 82441671 A C FABP12 Splice_Site p.X82_splice 0.28 TCGA-EE-A29S-06 8 85800011 85800011 G A RALYL Silent p.L299L 0.28 TCGA-EE-A29S-06 8 94792928 94792928 C T TMEM67 Silent p.I274I 0.30 TCGA-EE-A29S-06 8 99441446 99441446 C T KCNS2 Silent p.F413F 0.31 TCGA-EE-A29S-06 9 101594159 101594159 C T GALNT12 Silent p.F279F 0.35 TCGA-EE-A29S-06 9 101894867 101894867 A T TGFBR1 Silent p.S140S 0.58 TCGA-EE-A29S-06 9 104133710 104133710 G A BAAT 5'UTR 0.62 TCGA-EE-A29S-06 9 104357235 104357235 G A PPP3R2 5'UTR 0.40 TCGA-EE-A29S-06 9 113562764 113562764 G A MUSK Silent p.Q702Q 0.53 TCGA-EE-A29S-06 9 113704360 113704360 C T LPAR1 Nonsense_Mutation p.W45* 0.48 TCGA-EE-A29S-06 9 116154567 116154567 G A ALAD Intron 0.44 TCGA-EE-A29S-06 9 116930088 116930088 C T COL27A1 Missense_Mutation p.P85S 0.53 unknown(0) TCGA-EE-A29S-06 9 118997643 118997643 C T PAPPA Missense_Mutation p.A820V 0.28 tolerated(0.36) benign(0) TCGA-EE-A29S-06 9 121929737 121929737 G A BRINP1 Silent p.P637P 0.50 TCGA-EE-A29S-06 9 125282026 125282026 G A OR1J4 Missense_Mutation p.G203R 0.45 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A29S-06 9 125315992 125315992 C G OR1N2 Missense_Mutation p.R182G 0.41 deleterious(0.01) benign(0.367) TCGA-EE-A29S-06 9 125551786 125551786 C T OR5C1 Missense_Mutation p.S192L 0.45 deleterious(0) benign(0.285) TCGA-EE-A29S-06 9 127791959 127791959 A G SCAI Missense_Mutation p.V120A 0.70 deleterious(0) probably_damaging(0.978) TCGA-EE-A29S-06 9 134385344 134385344 C T POMT1 Silent p.V220V 0.44 TCGA-EE-A29S-06 9 135374956 135374956 C T C9orf171 Missense_Mutation p.P201S 0.44 deleterious(0.01) probably_damaging(1) TCGA-EE-A29S-06 9 135554022 135554022 C T GTF3C4 Missense_Mutation p.P339L 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29S-06 9 137801601 137801601 G A FCN1 3'UTR 0.40 TCGA-EE-A29S-06 9 14819410 14819410 C T FREM1 Missense_Mutation p.G790R 0.26 deleterious(0) probably_damaging(0.993) TCGA-EE-A29S-06 9 20716105 20716105 T G FOCAD Intron 0.36 TCGA-EE-A29S-06 9 21077649 21077649 C T IFNB1 Missense_Mutation p.E74K 0.54 tolerated(0.08) probably_damaging(0.968) TCGA-EE-A29S-06 9 21455666 21455666 C T MIR31HG RNA 0.50 TCGA-EE-A29S-06 9 35705814 35705814 G A TLN1 Missense_Mutation p.S1849F 0.55 deleterious(0) possibly_damaging(0.478) TCGA-EE-A29S-06 9 39085901 39085901 G A CNTNAP3 Intron 0.62 TCGA-EE-A29S-06 9 75531873 75531873 C T ALDH1A1 Missense_Mutation p.G333E 0.48 deleterious(0) probably_damaging(0.996) TCGA-EE-A29S-06 9 8518238 8518238 G A PTPRD Missense_Mutation p.P385S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 9 85640755 85640755 C T RASEF Silent p.K171K 0.35 TCGA-EE-A29S-06 9 85913682 85913682 C T FRMD3 Missense_Mutation p.E351K 0.52 tolerated(0.09) benign(0.082) TCGA-EE-A29S-06 9 99015188 99015188 C T HSD17B3 Silent p.R94R 0.55 TCGA-EE-A29S-06 9 99220751 99220751 C T HABP4 Missense_Mutation p.S147F 0.51 tolerated(0.06) possibly_damaging(0.646) TCGA-EE-A29S-06 X 107412785 107412785 G A COL4A6 Missense_Mutation p.P1212S 0.63 possibly_damaging(0.809) TCGA-EE-A29S-06 X 107826129 107826129 C T COL4A5 Missense_Mutation p.P318S 0.67 unknown(0) TCGA-EE-A29S-06 X 114537898 114537898 G A LUZP4 Missense_Mutation p.G86E 0.69 tolerated(0.58) benign(0.155) TCGA-EE-A29S-06 X 135430317 135430317 G A GPR112 Silent p.R1484R 0.77 TCGA-EE-A29S-06 X 138869362 138869362 C G ATP11C Missense_Mutation p.R524T 0.48 tolerated(0.11) benign(0.232) TCGA-EE-A29S-06 X 140983078 140983078 C T MAGEC3 Silent p.F311F 0.64 TCGA-EE-A29S-06 X 148579812 148579812 G A IDS Silent p.L178L 0.69 TCGA-EE-A29S-06 X 151424271 151424271 C T GABRA3 Missense_Mutation p.G177E 0.65 deleterious(0) probably_damaging(0.998) TCGA-EE-A29S-06 X 152159204 152159204 C T PNMA5 Silent p.G313G 0.69 TCGA-EE-A29S-06 X 152772362 152772362 C T BGN Missense_Mutation p.R251C 0.74 deleterious(0.01) possibly_damaging(0.696) TCGA-EE-A29S-06 X 153222161 153222161 G A HCFC1 Silent p.P850P 0.66 TCGA-EE-A29S-06 X 153222162 153222162 G A HCFC1 Missense_Mutation p.P850L 0.66 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A29S-06 X 19425327 19425327 G A MAP3K15 Missense_Mutation p.S608F 0.67 deleterious(0) possibly_damaging(0.903) TCGA-EE-A29S-06 X 26157129 26157129 C T MAGEB18 Silent p.L9L 0.58 TCGA-EE-A29S-06 X 26211927 26211927 C T MAGEB6 5'UTR 0.67 TCGA-EE-A29S-06 X 2951252 2951252 C T ARSH Silent p.S505S 0.52 TCGA-EE-A29S-06 X 48546477 48546477 G A WAS Missense_Mutation p.G257R 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 X 49068736 49068736 C T CACNA1F Missense_Mutation p.M1336I 0.69 deleterious(0.01) benign(0.007) TCGA-EE-A29S-06 X 52825650 52825650 C T SPANXN5 Missense_Mutation p.D33N 0.78 tolerated(0.11) possibly_damaging(0.653) TCGA-EE-A29S-06 X 53267476 53267476 C T IQSEC2 Missense_Mutation p.G1043E 0.68 deleterious(0) probably_damaging(0.999) TCGA-EE-A29S-06 X 69421838 69421838 C T DGAT2L6 Missense_Mutation p.L191F 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A29S-06 X 73041921 73041921 C T XIST RNA 0.75 TCGA-EE-A29S-06 X 73963188 73963188 C T KIAA2022 Missense_Mutation p.D402N 0.64 tolerated(0.08) possibly_damaging(0.484) TCGA-EE-A29S-06 X 73963438 73963438 C T KIAA2022 Silent p.Q318Q 0.77 TCGA-EE-A29S-06 X 77913356 77913356 G A ZCCHC5 Missense_Mutation p.P188S 0.61 tolerated(0.14) benign(0.122) TCGA-EE-A29S-06 X 84526400 84526400 C T ZNF711 Missense_Mutation p.P618S 0.69 deleterious(0.01) probably_damaging(1) TCGA-EE-A29S-06 X 84622755 84622755 G A POF1B Missense_Mutation p.T100I 0.71 tolerated_low_confidence(0.05) possibly_damaging(0.53) TCGA-EE-A29S-06 X 92964506 92964506 A T FAM133A Missense_Mutation p.I30F 0.67 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A29S-06 Y 2654997 2654997 G A SRY 3'UTR 0.66 TCGA-EE-A29S-06 Y 4925237 4925237 C T PCDH11Y Missense_Mutation p.R125C 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 10 111886190 111886190 C T ADD3 Nonsense_Mutation p.R513* 0.30 TCGA-EE-A29T-06 10 30315708 30315708 G A KIAA1462 Silent p.S1123S 0.38 TCGA-EE-A29T-06 10 46122251 46122251 C T ZFAND4 Silent p.Q340Q 0.39 TCGA-EE-A29T-06 10 49658854 49658854 C T ARHGAP22 Missense_Mutation p.G456R 0.38 tolerated(0.05) benign(0.012) TCGA-EE-A29T-06 10 55755516 55755516 C T PCDH15 Missense_Mutation p.D921N 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A29T-06 10 6521089 6521089 G A PRKCQ Silent p.F406F 0.22 TCGA-EE-A29T-06 10 91195972 91195972 G A SLC16A12 Missense_Mutation p.P378L 0.33 tolerated(0.11) possibly_damaging(0.477) TCGA-EE-A29T-06 10 96701641 96701641 C T CYP2C9 Silent p.F65F 0.34 TCGA-EE-A29T-06 11 102567432 102567432 C T MMP27 Missense_Mutation p.D252N 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 11 102820922 102820922 T A MMP13 Silent p.P278P 0.18 TCGA-EE-A29T-06 11 104825616 104825616 C T CASP4 Silent p.E40E 0.33 TCGA-EE-A29T-06 11 113140939 113140939 A C NCAM1 Missense_Mutation p.T770P 0.34 tolerated(0.12) possibly_damaging(0.601) TCGA-EE-A29T-06 11 118267125 118267125 G A UBE4A Silent p.E1064E 0.38 TCGA-EE-A29T-06 11 121414377 121414377 G A SORL1 Silent p.S602S 0.30 TCGA-EE-A29T-06 11 1257673 1257673 G A MUC5B Missense_Mutation p.G980R 0.25 unknown(0) TCGA-EE-A29T-06 11 18195097 18195097 C T MRGPRX4 Silent p.L98L 0.26 TCGA-EE-A29T-06 11 18754863 18754863 C T PTPN5 Silent p.T379T 0.28 TCGA-EE-A29T-06 11 18955657 18955657 G A MRGPRX1 Silent p.F225F 0.14 TCGA-EE-A29T-06 11 20623056 20623056 G A SLC6A5 Missense_Mutation p.E129K 0.19 deleterious_low_confidence(0.02) benign(0.075) TCGA-EE-A29T-06 11 35461194 35461194 G A PAMR1 Missense_Mutation p.P378S 0.26 tolerated(0.13) benign(0.168) TCGA-EE-A29T-06 11 45274137 45274137 G A SYT13 Silent p.L227L 0.23 TCGA-EE-A29T-06 11 5010961 5010961 C T MMP26 Silent p.F61F 0.28 TCGA-EE-A29T-06 11 5372754 5372754 C T OR51B6 Missense_Mutation p.S6F 0.19 deleterious(0) benign(0.432) TCGA-EE-A29T-06 11 5373584 5373584 C T OR51B6 Missense_Mutation p.P283S 0.22 deleterious(0) probably_damaging(0.968) TCGA-EE-A29T-06 11 55340013 55340013 G T OR4C16 Missense_Mutation p.W137L 0.14 deleterious(0.04) benign(0.065) TCGA-EE-A29T-06 11 55872668 55872668 C T OR8H2 Silent p.I50I 0.29 TCGA-EE-A29T-06 11 55889998 55889998 C T OR8H3 Silent p.I50I 0.11 TCGA-EE-A29T-06 11 56000118 56000118 G A OR5T2 Missense_Mutation p.P182S 0.29 tolerated(0.42) benign(0.047) TCGA-EE-A29T-06 11 56230548 56230548 G A OR5M9 Silent p.V110V 0.48 TCGA-EE-A29T-06 11 61291911 61291911 G A SYT7 Missense_Mutation p.S314F 0.46 tolerated(0.36) benign(0.143) TCGA-EE-A29T-06 11 613913 613913 C T IRF7 Intron 0.22 TCGA-EE-A29T-06 11 613914 613914 C T IRF7 Intron 0.22 TCGA-EE-A29T-06 11 64507144 64507144 C T RASGRP2 Silent p.R220R 0.33 TCGA-EE-A29T-06 11 64507145 64507145 C T RASGRP2 Missense_Mutation p.R220Q 0.33 deleterious(0) probably_damaging(0.968) TCGA-EE-A29T-06 11 71249292 71249292 G A KRTAP5-8 Missense_Mutation p.G64E 0.38 tolerated_low_confidence(0.16) unknown(0) TCGA-EE-A29T-06 11 89531794 89531794 T C TRIM49 Missense_Mutation p.H288R 0.17 tolerated(0.3) benign(0.005) TCGA-EE-A29T-06 11 92531925 92531925 C T FAT3 Missense_Mutation p.P1916S 0.29 benign(0.004) TCGA-EE-A29T-06 12 100042451 100042451 G A FAM71C Missense_Mutation p.E167K 0.33 deleterious(0.04) benign(0.445) TCGA-EE-A29T-06 12 102036313 102036313 G A MYBPC1 Missense_Mutation p.G236D 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 12 103234229 103234229 C T PAH Missense_Mutation p.E422K 0.12 deleterious(0) probably_damaging(0.917) TCGA-EE-A29T-06 12 104078802 104078802 C T STAB2 Silent p.S979S 0.09 TCGA-EE-A29T-06 12 117923486 117923486 C T KSR2 Missense_Mutation p.G744R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 12 119594348 119594348 C G SRRM4 Silent p.S527S 0.21 TCGA-EE-A29T-06 12 122361858 122361858 C T WDR66 Silent p.L237L 0.35 TCGA-EE-A29T-06 12 129694081 129694081 T A TMEM132D Missense_Mutation p.D476V 0.14 deleterious(0) probably_damaging(0.935) TCGA-EE-A29T-06 12 130856048 130856048 C T PIWIL1 Missense_Mutation p.P831S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 12 130926570 130926570 C T RIMBP2 Missense_Mutation p.E426K 0.32 tolerated(0.07) possibly_damaging(0.664) TCGA-EE-A29T-06 12 132398342 132398342 C T ULK1 Missense_Mutation p.S403F 0.34 tolerated(0.24) probably_damaging(0.996) TCGA-EE-A29T-06 12 13243460 13243460 C A GSG1 Missense_Mutation p.C114F 0.13 deleterious(0) possibly_damaging(0.828) TCGA-EE-A29T-06 12 13716187 13716187 G A GRIN2B Nonsense_Mutation p.R1329* 0.27 TCGA-EE-A29T-06 12 14613765 14613765 C T ATF7IP Missense_Mutation p.P832L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-EE-A29T-06 12 21918972 21918972 C T KCNJ8 Nonsense_Mutation p.W320* 0.33 TCGA-EE-A29T-06 12 26709227 26709227 G A ITPR2 Missense_Mutation p.P1635S 0.14 tolerated(0.1) benign(0.121) TCGA-EE-A29T-06 12 46339063 46339063 A G SCAF11 Silent p.S144S 0.39 TCGA-EE-A29T-06 12 49251972 49251972 G A RND1 Missense_Mutation p.A169V 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A29T-06 12 51236836 51236836 G A TMPRSS12 Missense_Mutation p.R30K 0.17 tolerated_low_confidence(0.14) benign(0.007) TCGA-EE-A29T-06 12 53091531 53091531 C T KRT77 Silent p.A231A 0.18 TCGA-EE-A29T-06 12 53238400 53238400 C A KRT78 Silent p.R288R 0.14 TCGA-EE-A29T-06 12 54676930 54676930 T C HNRNPA1 Silent p.G273G 0.26 TCGA-EE-A29T-06 12 56648472 56648472 G A ANKRD52 Missense_Mutation p.R195W 0.14 deleterious(0.04) probably_damaging(0.918) TCGA-EE-A29T-06 12 5708726 5708726 C T ANO2 Silent p.S719S 0.28 TCGA-EE-A29T-06 12 57574511 57574511 C G LRP1 Missense_Mutation p.D1816E 0.23 possibly_damaging(0.7) TCGA-EE-A29T-06 12 63328472 63328472 G A PPM1H Silent p.G15G 0.19 TCGA-EE-A29T-06 12 6861216 6861216 G A MLF2 Missense_Mutation p.P19S 0.26 tolerated(0.41) probably_damaging(0.945) TCGA-EE-A29T-06 12 77421857 77421857 G A E2F7 Missense_Mutation p.P649L 0.13 tolerated(0.41) benign(0.003) TCGA-EE-A29T-06 12 81688624 81688624 G A PPFIA2 Missense_Mutation p.T972I 0.17 deleterious(0) possibly_damaging(0.836) TCGA-EE-A29T-06 13 19751504 19751504 C T TUBA3C Missense_Mutation p.E207K 0.48 deleterious_low_confidence(0.01) benign(0.153) TCGA-EE-A29T-06 13 25914276 25914276 T A NUPL1 3'UTR 0.22 TCGA-EE-A29T-06 13 28141946 28141946 C T LNX2 Missense_Mutation p.G229E 0.61 deleterious(0) probably_damaging(0.996) TCGA-EE-A29T-06 13 30346297 30346297 G A UBL3 Nonsense_Mutation p.R59* 0.62 TCGA-EE-A29T-06 13 37679424 37679424 G A CSNK1A1L 5'UTR 0.26 TCGA-EE-A29T-06 13 52603378 52603378 C T UTP14C Silent p.I146I 0.32 TCGA-EE-A29T-06 14 100604097 100604097 G A EVL Missense_Mutation p.S351N 0.36 tolerated(0.17) possibly_damaging(0.899) TCGA-EE-A29T-06 14 105416319 105416319 G A AHNAK2 Silent p.F1823F 0.13 TCGA-EE-A29T-06 14 106110139 106110139 C T IGHG2 Missense_Mutation p.G160D 0.08 tolerated(0.46) benign(0.292) TCGA-EE-A29T-06 14 106110140 106110140 C T IGHG2 Missense_Mutation p.G160S 0.08 deleterious(0.03) probably_damaging(0.911) TCGA-EE-A29T-06 14 106586224 106586224 G A IGHV3-13 Silent p.T87T 0.13 TCGA-EE-A29T-06 14 107048837 107048837 C T IGHV3-53 Silent p.G61G 0.06 TCGA-EE-A29T-06 14 20692622 20692622 C T OR11H6 Nonsense_Mutation p.R252* 0.37 TCGA-EE-A29T-06 14 22362987 22362987 C T TRAV8-4 Silent p.L40L 0.31 TCGA-EE-A29T-06 14 26949269 26949269 G A NOVA1 Nonsense_Mutation p.R121* 0.18 TCGA-EE-A29T-06 14 47120582 47120582 C T RPL10L Missense_Mutation p.G120R 0.19 deleterious(0.05) probably_damaging(0.953) TCGA-EE-A29T-06 14 73720524 73720524 C T PAPLN Missense_Mutation p.S359F 0.11 deleterious(0) possibly_damaging(0.459) TCGA-EE-A29T-06 14 77572085 77572085 A G CIPC Missense_Mutation p.R12G 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29T-06 14 95054255 95054255 G A SERPINA5 Missense_Mutation p.D186N 0.12 tolerated(0.18) possibly_damaging(0.746) TCGA-EE-A29T-06 15 101595206 101595206 C T LRRK1 Silent p.I1370I 0.23 TCGA-EE-A29T-06 15 101775495 101775495 G A CHSY1 Missense_Mutation p.T203I 0.22 deleterious(0.01) benign(0.187) TCGA-EE-A29T-06 15 24921633 24921633 C T NPAP1 Missense_Mutation p.P207S 0.29 tolerated(0.12) probably_damaging(0.93) TCGA-EE-A29T-06 15 24922092 24922092 C T NPAP1 Silent p.L360L 0.20 TCGA-EE-A29T-06 15 25463616 25463616 C T SNORD115-27 5'Flank 0.33 TCGA-EE-A29T-06 15 35674101 35674101 C T DPH6 Missense_Mutation p.G195E 0.31 tolerated(0.1) benign(0.25) TCGA-EE-A29T-06 15 53050013 53050013 C A ONECUT1 Missense_Mutation p.K379N 0.12 tolerated(0.05) benign(0.099) TCGA-EE-A29T-06 15 64716244 64716244 C T TRIP4 Missense_Mutation p.S458F 0.21 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29T-06 15 65489214 65489214 G A CILP Missense_Mutation p.P1137L 0.09 deleterious(0.01) benign(0.193) TCGA-EE-A29T-06 15 65489215 65489215 G A CILP Missense_Mutation p.P1137S 0.10 deleterious(0.03) benign(0.005) TCGA-EE-A29T-06 15 66774132 66774132 A T MAP2K1 Missense_Mutation p.E203V 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A29T-06 15 80762708 80762708 C T ARNT2 Missense_Mutation p.S115F 0.23 deleterious(0) possibly_damaging(0.788) TCGA-EE-A29T-06 15 81234613 81234613 G A KIAA1199 Missense_Mutation p.E1212K 0.28 tolerated(0.21) possibly_damaging(0.818) TCGA-EE-A29T-06 15 83926842 83926842 C T BNC1 Silent p.L779L 0.24 TCGA-EE-A29T-06 15 84582051 84582051 C T ADAMTSL3 Silent p.I636I 0.28 TCGA-EE-A29T-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.12 deleterious(0.03) benign(0.001) TCGA-EE-A29T-06 16 19488818 19488818 C A TMC5 Missense_Mutation p.T716N 0.12 tolerated(0.59) benign(0.001) TCGA-EE-A29T-06 16 2286835 2286835 T A DNASE1L2 Silent p.A6A 0.22 TCGA-EE-A29T-06 16 23226481 23226481 C T SCNN1G Silent p.I547I 0.16 TCGA-EE-A29T-06 16 23379177 23379177 G A SCNN1B Silent p.R259R 0.16 TCGA-EE-A29T-06 16 30990517 30990517 C T SETD1A Missense_Mutation p.P1137L 0.37 unknown(0) TCGA-EE-A29T-06 16 31153278 31153278 C T PRSS36 Missense_Mutation p.D509N 0.11 tolerated(0.08) benign(0.012) TCGA-EE-A29T-06 16 31497118 31497118 G A SLC5A2 Silent p.T124T 0.24 TCGA-EE-A29T-06 16 31539907 31539907 G A AHSP Silent p.Q68Q 0.15 TCGA-EE-A29T-06 16 53358667 53358667 C T CHD9 Nonsense_Mutation p.Q2836* 0.23 TCGA-EE-A29T-06 16 55857517 55857517 C T CES1 Missense_Mutation p.E162K 0.16 deleterious(0.02) possibly_damaging(0.9) TCGA-EE-A29T-06 16 68191931 68191931 C T NFATC3 Silent p.L521L 0.10 TCGA-EE-A29T-06 16 720126 720126 C T RHOT2 Nonsense_Mutation p.R94* 0.16 TCGA-EE-A29T-06 16 818744 818744 C T MSLN 3'UTR 0.17 TCGA-EE-A29T-06 16 818745 818745 C T MSLN 3'UTR 0.17 TCGA-EE-A29T-06 16 88644000 88644005 GAGAAA AGAAG ZC3H18 Frame_Shift_Del p.E157Rfs*44 0.32 TCGA-EE-A29T-06 17 10397696 10397696 G A MYH1 Missense_Mutation p.S1881F 0.29 deleterious(0) benign(0.166) TCGA-EE-A29T-06 17 10440656 10440656 C T MYH2 Silent p.L597L 0.43 TCGA-EE-A29T-06 17 1183438 1183438 C T TUSC5 Missense_Mutation p.S48L 0.30 deleterious(0) benign(0.322) TCGA-EE-A29T-06 17 18653121 18653121 G A FBXW10 Missense_Mutation p.D253N 0.34 tolerated(0.49) benign(0.009) TCGA-EE-A29T-06 17 25967796 25967796 C T LGALS9 Silent p.F110F 0.33 TCGA-EE-A29T-06 17 39646009 39646009 G A KRT36 Silent p.S36S 0.14 TCGA-EE-A29T-06 17 40321526 40321526 C T KCNH4 Nonsense_Mutation p.W520* 0.17 TCGA-EE-A29T-06 17 40946892 40946892 C T WNK4 Missense_Mutation p.S818F 0.19 deleterious(0.04) unknown(0) TCGA-EE-A29T-06 17 41907113 41907113 G A MPP3 Missense_Mutation p.P117L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 17 42927795 42927795 C A HIGD1B 3'UTR 0.24 TCGA-EE-A29T-06 17 45012411 45012411 T C GOSR2 Missense_Mutation p.I118T 0.20 deleterious(0) probably_damaging(0.979) TCGA-EE-A29T-06 17 48757161 48757161 G A ABCC3 Silent p.V1236V 0.32 TCGA-EE-A29T-06 17 50212287 50212287 C T CA10 Intron 0.31 TCGA-EE-A29T-06 17 56358064 56358064 C A MPO Missense_Mutation p.W19L 0.18 tolerated_low_confidence(0.71) benign(0) TCGA-EE-A29T-06 17 59996818 59996818 T A INTS2 Missense_Mutation p.N206Y 0.42 tolerated(0.16) possibly_damaging(0.629) TCGA-EE-A29T-06 17 7132546 7132546 G A DVL2 Missense_Mutation p.R289W 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A29T-06 17 72955984 72955984 G A HID1 Missense_Mutation p.R334C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29T-06 17 73745050 73745050 C T ITGB4 Silent p.H1080H 0.23 TCGA-EE-A29T-06 17 74005262 74005262 G T EVPL Missense_Mutation p.Q1342K 0.14 deleterious(0.01) benign(0.12) TCGA-EE-A29T-06 17 76396874 76396874 C T PGS1 Missense_Mutation p.S273F 0.16 deleterious(0) probably_damaging(0.98) TCGA-EE-A29T-06 17 76501416 76501416 C T DNAH17 Missense_Mutation p.E1635K 0.12 probably_damaging(0.921) TCGA-EE-A29T-06 17 79478433 79478433 C T ACTG1 Missense_Mutation p.E195K 0.21 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-EE-A29T-06 17 80146169 80146169 G A CCDC57 Silent p.T326T 0.19 TCGA-EE-A29T-06 17 80726350 80726350 C T TBCD Missense_Mutation p.P164S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 17 8792134 8792134 C T PIK3R5 Missense_Mutation p.E324K 0.41 tolerated(0.11) benign(0.438) TCGA-EE-A29T-06 17 9675003 9675003 C T DHRS7C Silent p.R247R 0.15 TCGA-EE-A29T-06 18 19263529 19263529 G T ABHD3 Intron 0.25 TCGA-EE-A29T-06 18 21110198 21110198 T A C18orf8 Nonsense_Mutation p.C535* 0.15 TCGA-EE-A29T-06 18 28719834 28719834 C T DSC1 Missense_Mutation p.E514K 0.17 deleterious(0.03) benign(0.225) TCGA-EE-A29T-06 18 3067256 3067256 C T MYOM1 3'UTR 0.30 TCGA-EE-A29T-06 18 32398132 32398132 C T DTNA Silent p.F238F 0.14 TCGA-EE-A29T-06 18 72776269 72776269 G A ZNF407 Missense_Mutation p.E2198K 0.35 deleterious(0.01) benign(0.257) TCGA-EE-A29T-06 18 9258538 9258538 C T ANKRD12 Missense_Mutation p.S1758L 0.09 tolerated(0.09) benign(0.002) TCGA-EE-A29T-06 19 13563692 13563692 C T CACNA1A Silent p.T179T 0.26 TCGA-EE-A29T-06 19 14626759 14626759 G A DNAJB1 Missense_Mutation p.P339L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29T-06 19 15271640 15271640 A G NOTCH3 Missense_Mutation p.S2267P 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A29T-06 19 15511962 15511962 C A AKAP8L Missense_Mutation p.R272L 0.32 tolerated(0.05) possibly_damaging(0.906) TCGA-EE-A29T-06 19 17038952 17038952 G T CPAMD8 Silent p.T1126T 0.26 TCGA-EE-A29T-06 19 18245776 18245776 C T MAST3 Silent p.F589F 0.33 TCGA-EE-A29T-06 19 21365899 21365899 T G ZNF431 Missense_Mutation p.C265G 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29T-06 19 21512112 21512112 A G ZNF708 5'UTR 0.31 TCGA-EE-A29T-06 19 37038205 37038205 C A ZNF529 Nonsense_Mutation p.E419* 0.11 TCGA-EE-A29T-06 19 38782538 38782538 G A SPINT2 Missense_Mutation p.M217I 0.30 tolerated(0.17) benign(0.001) TCGA-EE-A29T-06 19 38848949 38848949 C G CATSPERG Missense_Mutation p.I449M 0.13 deleterious(0) possibly_damaging(0.506) TCGA-EE-A29T-06 19 39308097 39308097 G A ECH1 Silent p.I156I 0.31 TCGA-EE-A29T-06 19 39328048 39328048 T A AC104534.3 Missense_Mutation p.N180Y 0.10 deleterious(0.01) benign(0.127) TCGA-EE-A29T-06 19 40368750 40368750 G A FCGBP Missense_Mutation p.R4200W 0.07 possibly_damaging(0.898) TCGA-EE-A29T-06 19 41081460 41081460 C T SPTBN4 Silent p.S2560S 0.39 TCGA-EE-A29T-06 19 4210065 4210065 C T ANKRD24 Missense_Mutation p.S294F 0.22 deleterious(0.03) possibly_damaging(0.831) TCGA-EE-A29T-06 19 42880626 42880626 C T MEGF8 Missense_Mutation p.P2679L 0.23 deleterious(0.01) possibly_damaging(0.475) TCGA-EE-A29T-06 19 44222942 44222942 G A IRGC Missense_Mutation p.E78K 0.39 tolerated(0.22) benign(0.001) TCGA-EE-A29T-06 19 47969245 47969245 G A SLC8A2 Missense_Mutation p.S139F 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 19 49001529 49001529 C T LMTK3 Missense_Mutation p.D962N 0.23 unknown(0) TCGA-EE-A29T-06 19 4902585 4902585 C T ARRDC5 Missense_Mutation p.D99N 0.34 tolerated(0.09) benign(0.056) TCGA-EE-A29T-06 19 51274125 51274125 A C GPR32 Missense_Mutation p.M90L 0.20 tolerated(0.58) benign(0.004) TCGA-EE-A29T-06 19 51995075 51995075 C T SIGLEC12 Silent p.L536L 0.35 TCGA-EE-A29T-06 19 52002435 52002435 C T SIGLEC12 Missense_Mutation p.G375E 0.24 tolerated(0.09) possibly_damaging(0.614) TCGA-EE-A29T-06 19 52327436 52327436 G A FPR3 Silent p.V145V 0.24 TCGA-EE-A29T-06 19 54802712 54802712 G A LILRA3 Silent p.T243T 0.60 TCGA-EE-A29T-06 19 56368952 56368952 G A NLRP4 Intron 0.20 TCGA-EE-A29T-06 19 56369294 56369294 C T NLRP4 Missense_Mutation p.R179W 0.35 deleterious(0) probably_damaging(0.981) TCGA-EE-A29T-06 19 56490917 56490917 G A NLRP8 Missense_Mutation p.E1012K 0.20 tolerated(0.89) benign(0.001) TCGA-EE-A29T-06 19 58199110 58199110 C A ZNF551 Silent p.I489I 0.11 TCGA-EE-A29T-06 19 6147624 6147624 G A ACSBG2 Missense_Mutation p.E79K 0.14 tolerated(0.43) benign(0.01) TCGA-EE-A29T-06 19 8966725 8966725 C T MUC16 Missense_Mutation p.E14410K 0.27 probably_damaging(0.997) TCGA-EE-A29T-06 19 9048512 9048512 C T MUC16 Missense_Mutation p.G11040E 0.12 benign(0.016) TCGA-EE-A29T-06 19 9049889 9049889 G A MUC16 Missense_Mutation p.P10581L 0.23 benign(0) TCGA-EE-A29T-06 19 9069682 9069682 C T MUC16 Missense_Mutation p.E5922K 0.12 unknown(0) TCGA-EE-A29T-06 19 9069742 9069742 C T MUC16 Missense_Mutation p.E5902K 0.13 unknown(0) TCGA-EE-A29T-06 19 9084514 9084514 G C MUC16 Missense_Mutation p.T2434S 0.12 unknown(0) TCGA-EE-A29T-06 1 11169377 11169377 T A MTOR Missense_Mutation p.I2500F 0.06 deleterious(0) probably_damaging(0.949) TCGA-EE-A29T-06 1 12183367 12183367 G A TNFRSF8 Missense_Mutation p.E325K 0.41 tolerated(0.06) benign(0.347) TCGA-EE-A29T-06 1 1271760 1271760 C T DVL1 Missense_Mutation p.R592Q 0.14 tolerated(0.24) unknown(0) TCGA-EE-A29T-06 1 147091185 147091185 C T BCL9 Silent p.A408A 0.37 TCGA-EE-A29T-06 1 150525995 150525995 G A ADAMTSL4 Silent p.R176R 0.39 TCGA-EE-A29T-06 1 151105668 151105668 C A SEMA6C Silent p.L727L 0.26 TCGA-EE-A29T-06 1 152748865 152748865 C A LCE1F Missense_Mutation p.S6R 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A29T-06 1 152784960 152784960 C A LCE1B Missense_Mutation p.P13H 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A29T-06 1 156518442 156518442 C G IQGAP3 Missense_Mutation p.V642L 0.09 tolerated(0.08) benign(0.021) TCGA-EE-A29T-06 1 157772444 157772444 G A FCRL1 Silent p.V110V 0.11 TCGA-EE-A29T-06 1 158368834 158368834 C A OR10T2 Silent p.L141L 0.07 TCGA-EE-A29T-06 1 158735788 158735788 G A OR6N1 Missense_Mutation p.P229S 0.38 tolerated(0.06) benign(0.06) TCGA-EE-A29T-06 1 158746611 158746611 C T OR6N2 Missense_Mutation p.R272Q 0.30 tolerated(0.08) benign(0.133) TCGA-EE-A29T-06 1 159273799 159273799 G A FCER1A Missense_Mutation p.G53E 0.47 tolerated(0.45) benign(0.423) TCGA-EE-A29T-06 1 160465995 160465995 G A SLAMF6 Missense_Mutation p.P80S 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29T-06 1 16381957 16381957 G T CLCNKB Missense_Mutation p.R595L 0.10 deleterious(0.01) benign(0.003) TCGA-EE-A29T-06 1 166987157 166987157 G A MAEL Silent p.V334V 0.42 TCGA-EE-A29T-06 1 167823666 167823666 C T ADCY10 Missense_Mutation p.E745K 0.38 tolerated(0.32) benign(0.098) TCGA-EE-A29T-06 1 169510960 169510960 G T F5 Missense_Mutation p.P1123Q 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.596) TCGA-EE-A29T-06 1 169801573 169801573 G A C1orf112 Missense_Mutation p.G489R 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29T-06 1 176526028 176526028 G T PAPPA2 Missense_Mutation p.R190S 0.11 tolerated_low_confidence(0.16) benign(0.014) TCGA-EE-A29T-06 1 178489985 178489985 C T TEX35 Silent p.P173P 0.13 TCGA-EE-A29T-06 1 183711359 183711359 G A RGL1 Missense_Mutation p.E23K 0.18 deleterious_low_confidence(0.01) benign(0.034) TCGA-EE-A29T-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.53 deleterious(0) possibly_damaging(0.871) TCGA-EE-A29T-06 1 193104526 193104526 T C CDC73 Missense_Mutation p.S105P 0.08 tolerated(0.21) benign(0.003) TCGA-EE-A29T-06 1 197021897 197021897 C T F13B Silent p.G474G 0.30 TCGA-EE-A29T-06 1 197890485 197890485 G A LHX9 Silent p.S143S 0.37 TCGA-EE-A29T-06 1 200971395 200971395 C T KIF21B Silent p.G432G 0.47 TCGA-EE-A29T-06 1 201061175 201061175 C T CACNA1S Missense_Mutation p.G156R 0.14 tolerated(0.11) benign(0.111) TCGA-EE-A29T-06 1 206224425 206224425 C T AVPR1B 5'UTR 0.11 TCGA-EE-A29T-06 1 207110613 207110613 G T PIGR Missense_Mutation p.P291Q 0.11 tolerated(0.64) benign(0.021) TCGA-EE-A29T-06 1 228003849 228003849 G A PRSS38 Silent p.R69R 0.33 TCGA-EE-A29T-06 1 228362564 228362564 G A IBA57 Silent p.G171G 0.53 TCGA-EE-A29T-06 1 247654771 247654771 C T OR2W5 RNA 0.30 TCGA-EE-A29T-06 1 247752288 247752288 C T OR2G2 Silent p.F209F 0.25 TCGA-EE-A29T-06 1 26664149 26664149 G A AIM1L Missense_Mutation p.A301V 0.26 deleterious(0.01) possibly_damaging(0.805) TCGA-EE-A29T-06 1 3331184 3331184 G A PRDM16 Silent p.R888R 0.37 TCGA-EE-A29T-06 1 35580899 35580899 C T ZMYM1 3'UTR 0.41 TCGA-EE-A29T-06 1 35852766 35852766 C T ZMYM4 Nonsense_Mutation p.Q667* 0.10 TCGA-EE-A29T-06 1 36030874 36030874 C T NCDN Silent p.I600I 0.22 TCGA-EE-A29T-06 1 3703794 3703794 G A LRRC47 Silent p.F232F 0.22 TCGA-EE-A29T-06 1 40149795 40149795 G A HPCAL4 Silent p.F64F 0.29 TCGA-EE-A29T-06 1 44490027 44490027 C T SLC6A9 5'UTR 0.26 TCGA-EE-A29T-06 1 48697782 48697782 G A SLC5A9 Missense_Mutation p.G311R 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A29T-06 1 67390462 67390462 G A WDR78 Missense_Mutation p.A18V 0.25 tolerated_low_confidence(0.67) benign(0) TCGA-EE-A29T-06 1 68947231 68947231 A T DEPDC1 Silent p.L609L 0.10 TCGA-EE-A29T-06 1 89250365 89250365 G A PKN2 Silent p.E343E 0.11 TCGA-EE-A29T-06 1 89658997 89658997 C T GBP4 Silent p.L154L 0.07 TCGA-EE-A29T-06 1 97547907 97547907 G A DPYD Silent p.T962T 0.38 TCGA-EE-A29T-06 20 1115690 1115690 C T PSMF1 Intron 0.26 TCGA-EE-A29T-06 20 24524112 24524112 G A SYNDIG1 Missense_Mutation p.E127K 0.29 tolerated(0.15) benign(0.033) TCGA-EE-A29T-06 20 34806854 34806854 G A EPB41L1 Silent p.T775T 0.13 TCGA-EE-A29T-06 20 39658074 39658074 G A TOP1 Missense_Mutation p.E13K 0.23 tolerated_low_confidence(0.44) unknown(0) TCGA-EE-A29T-06 20 42965964 42965964 G A R3HDML Missense_Mutation p.R56H 0.32 deleterious(0.01) benign(0.313) TCGA-EE-A29T-06 20 44453161 44453161 C T TNNC2 Missense_Mutation p.A58T 0.12 deleterious(0.03) benign(0.251) TCGA-EE-A29T-06 20 48522716 48522716 C T SPATA2 Missense_Mutation p.V335M 0.11 deleterious(0.01) possibly_damaging(0.817) TCGA-EE-A29T-06 20 60908968 60908968 G A LAMA5 Missense_Mutation p.T956I 0.25 benign(0.085) TCGA-EE-A29T-06 21 31798008 31798008 G A KRTAP13-3 Missense_Mutation p.P75S 0.17 tolerated(0.15) probably_damaging(0.951) TCGA-EE-A29T-06 21 42780168 42780168 C T MX2 3'UTR 0.18 TCGA-EE-A29T-06 21 43411399 43411399 G A ZBTB21 Missense_Mutation p.P936S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 21 47821494 47821494 G T PCNT Missense_Mutation p.M1607I 0.24 benign(0.001) TCGA-EE-A29T-06 22 23256442 23256442 A G IGLJ5 Missense_Mutation p.H12R 0.14 unknown(0) TCGA-EE-A29T-06 22 23959805 23959805 C T C22orf43 Missense_Mutation p.R159Q 0.26 tolerated_low_confidence(0.36) benign(0.05) TCGA-EE-A29T-06 22 24909338 24909338 G A UPB1 Missense_Mutation p.R169Q 0.30 tolerated(0.05) probably_damaging(1) TCGA-EE-A29T-06 22 25308636 25308636 G A SGSM1 Missense_Mutation p.E1004K 0.12 tolerated(0.2) possibly_damaging(0.573) TCGA-EE-A29T-06 22 32241015 32241015 C T DEPDC5 Missense_Mutation p.S929F 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A29T-06 22 32487710 32487710 G T SLC5A1 Missense_Mutation p.R414L 0.14 deleterious(0.02) probably_damaging(1) TCGA-EE-A29T-06 22 37159965 37159965 G A IFT27 Missense_Mutation p.P117L 0.25 deleterious(0.02) probably_damaging(1) TCGA-EE-A29T-06 22 37159966 37159966 G A IFT27 Missense_Mutation p.P117S 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A29T-06 22 38121393 38121393 G A TRIOBP Missense_Mutation p.G944S 0.20 deleterious_low_confidence(0.05) benign(0.126) TCGA-EE-A29T-06 22 39262804 39262804 C T CBX6 Missense_Mutation p.E217K 0.14 deleterious(0.01) benign(0.44) TCGA-EE-A29T-06 22 41747575 41747575 C T ZC3H7B Silent p.H653H 0.13 TCGA-EE-A29T-06 2 10263898 10263898 C T RRM2 Silent p.S178S 0.28 TCGA-EE-A29T-06 2 109527359 109527359 C T EDAR Intron 0.07 TCGA-EE-A29T-06 2 113783752 113783752 G A IL36B Missense_Mutation p.H107Y 0.30 deleterious_low_confidence(0) benign(0.192) TCGA-EE-A29T-06 2 132021974 132021974 C T POTEE Silent p.I982I 0.17 TCGA-EE-A29T-06 2 138208414 138208414 G A THSD7B Splice_Site p.X987_splice 0.08 TCGA-EE-A29T-06 2 141200090 141200090 G A LRP1B Missense_Mutation p.S3466L 0.19 possibly_damaging(0.637) TCGA-EE-A29T-06 2 148674898 148674898 G A ACVR2A Missense_Mutation p.G240E 0.19 tolerated(0.22) probably_damaging(1) TCGA-EE-A29T-06 2 149221414 149221414 C A MBD5 Missense_Mutation p.A108E 0.10 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A29T-06 2 169404121 169404121 G A CERS6 Silent p.P62P 0.21 TCGA-EE-A29T-06 2 170506906 170506907 - T CCDC173 Frame_Shift_Ins p.R362Kfs*7 0.09 TCGA-EE-A29T-06 2 17698846 17698846 C T RAD51AP2 Silent p.A279A 0.26 TCGA-EE-A29T-06 2 178990886 178990886 C T RBM45 Missense_Mutation p.R470W 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 2 179432352 179432352 A T TTN Silent p.A26169A 0.24 TCGA-EE-A29T-06 2 179616023 179616023 A G TTN Intron 0.24 TCGA-EE-A29T-06 2 179720995 179720995 C T CCDC141 Missense_Mutation p.E952K 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A29T-06 2 185801324 185801324 C T ZNF804A Missense_Mutation p.P401S 0.23 tolerated(0.24) benign(0.021) TCGA-EE-A29T-06 2 203157786 203157786 G A NOP58 Intron 0.15 TCGA-EE-A29T-06 2 207175879 207175879 G A ZDBF2 Silent p.E2209E 0.28 TCGA-EE-A29T-06 2 219294077 219294077 G A VIL1 Missense_Mutation p.G213R 0.28 deleterious(0) probably_damaging(0.987) TCGA-EE-A29T-06 2 219856824 219856824 C T CRYBA2 Silent p.A101A 0.15 TCGA-EE-A29T-06 2 224462845 224462845 C T SCG2 Missense_Mutation p.D386N 0.26 deleterious(0.02) possibly_damaging(0.572) TCGA-EE-A29T-06 2 226447223 226447223 C T NYAP2 Missense_Mutation p.P364S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 2 227915713 227915713 G A COL4A4 Missense_Mutation p.P1044S 0.24 unknown(0) TCGA-EE-A29T-06 2 227920714 227920714 C T COL4A4 Missense_Mutation p.G888E 0.33 unknown(0) TCGA-EE-A29T-06 2 26700540 26700540 C T OTOF Silent p.L764L 0.17 TCGA-EE-A29T-06 2 27700471 27700471 C A IFT172 Missense_Mutation p.W392C 0.18 deleterious(0) probably_damaging(0.99) TCGA-EE-A29T-06 2 31600050 31600050 G A XDH Silent p.A432A 0.11 TCGA-EE-A29T-06 2 32475300 32475301 TT A NLRC4 Frame_Shift_Del p.E544Dfs*3 0.19 TCGA-EE-A29T-06 2 61147183 61147183 C G REL Nonsense_Mutation p.Y287* 0.23 TCGA-EE-A29T-06 2 71036427 71036427 G A CLEC4F Silent p.P582P 0.21 TCGA-EE-A29T-06 2 74326449 74326449 C T TET3 Missense_Mutation p.P970L 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A29T-06 3 108363543 108363543 C T DZIP3 Silent p.I558I 0.26 TCGA-EE-A29T-06 3 108474645 108474645 G T RETNLB Missense_Mutation p.R106S 0.12 deleterious(0) probably_damaging(0.978) TCGA-EE-A29T-06 3 111887770 111887770 C T SLC9C1 Missense_Mutation p.R1064Q 0.14 tolerated(0.18) benign(0.164) TCGA-EE-A29T-06 3 119306718 119306718 C T ADPRH Missense_Mutation p.S356F 0.26 deleterious_low_confidence(0.03) benign(0.052) TCGA-EE-A29T-06 3 119886712 119886712 G A GPR156 Missense_Mutation p.R538W 0.14 tolerated(0.14) benign(0.394) TCGA-EE-A29T-06 3 120394693 120394693 C T HGD Silent p.G11G 0.19 TCGA-EE-A29T-06 3 121980881 121980881 C T CASR Silent p.F333F 0.33 TCGA-EE-A29T-06 3 123451746 123451746 C T MYLK Missense_Mutation p.E505K 0.27 tolerated(1) benign(0.093) TCGA-EE-A29T-06 3 123987868 123987868 G A KALRN Silent p.E243E 0.26 TCGA-EE-A29T-06 3 127399303 127399303 C T ABTB1 Silent p.I474I 0.31 TCGA-EE-A29T-06 3 130162394 130162394 C T COL6A5 Nonsense_Mutation p.Q2188* 0.27 TCGA-EE-A29T-06 3 130289768 130289768 G A COL6A6 Silent p.V836V 0.35 TCGA-EE-A29T-06 3 130735216 130735216 C G ATP2C1 3'UTR 0.14 TCGA-EE-A29T-06 3 131082318 131082318 G A NUDT16P1 RNA 0.32 TCGA-EE-A29T-06 3 133674036 133674036 C T SLCO2A1 Silent p.G133G 0.27 TCGA-EE-A29T-06 3 136729035 136729035 T C IL20RB Silent p.P302P 0.18 TCGA-EE-A29T-06 3 137811342 137811342 T C DZIP1L Silent p.E251E 0.17 TCGA-EE-A29T-06 3 151082837 151082837 G A MED12L Missense_Mutation p.D975N 0.25 tolerated(0.61) benign(0.172) TCGA-EE-A29T-06 3 154886358 154886358 C T MME Nonsense_Mutation p.Q620* 0.23 TCGA-EE-A29T-06 3 164907368 164907368 G T SLITRK3 Missense_Mutation p.S417R 0.13 deleterious(0.04) benign(0.146) TCGA-EE-A29T-06 3 167045833 167045833 G A ZBBX Silent p.F253F 0.24 TCGA-EE-A29T-06 3 169521965 169521965 T A LRRC34 Missense_Mutation p.N178I 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A29T-06 3 172607420 172607420 C T SPATA16 Silent p.L550L 0.26 TCGA-EE-A29T-06 3 179533712 179533712 C T PEX5L Silent p.G340G 0.29 TCGA-EE-A29T-06 3 183994302 183994302 G A ECE2 Intron 0.25 TCGA-EE-A29T-06 3 30713878 30713878 C T TGFBR2 Silent p.S426S 0.21 TCGA-EE-A29T-06 3 32398872 32398872 G A CMTM8 Missense_Mutation p.G52E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 3 38180379 38180379 A T MYD88 Missense_Mutation p.Q76L 0.09 deleterious(0.03) benign(0.086) TCGA-EE-A29T-06 3 38927623 38927623 G A SCN11A Missense_Mutation p.P981L 0.30 tolerated(0.19) benign(0.005) TCGA-EE-A29T-06 3 44776381 44776381 T C ZNF501 Silent p.H156H 0.25 TCGA-EE-A29T-06 3 46563038 46563038 G A LRRC2 Missense_Mutation p.A347V 0.31 tolerated(0.13) benign(0.194) TCGA-EE-A29T-06 3 49756613 49756613 C T AMIGO3 Missense_Mutation p.E96K 0.37 tolerated(0.3) benign(0.003) TCGA-EE-A29T-06 3 50224060 50224060 G A SEMA3F Missense_Mutation p.V610M 0.06 tolerated(0.12) benign(0.27) TCGA-EE-A29T-06 3 51263126 51263126 C T DOCK3 Silent p.F433F 0.26 TCGA-EE-A29T-06 3 52469584 52469584 C T SEMA3G 3'UTR 0.45 TCGA-EE-A29T-06 3 52721303 52721303 G T GNL3 Missense_Mutation p.K38N 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 3 52773633 52773633 T G NEK4 Missense_Mutation p.E704A 0.09 deleterious(0) possibly_damaging(0.566) TCGA-EE-A29T-06 3 64617208 64617208 C T ADAMTS9 Missense_Mutation p.R771Q 0.33 tolerated(0.13) benign(0.067) TCGA-EE-A29T-06 3 67058673 67058673 C T KBTBD8 Missense_Mutation p.S557F 0.23 deleterious(0.01) benign(0.077) TCGA-EE-A29T-06 3 77666722 77666722 C T ROBO2 Silent p.L1134L 0.09 TCGA-EE-A29T-06 3 88040197 88040197 C T HTR1F Silent p.L100L 0.21 TCGA-EE-A29T-06 3 97167461 97167461 T C EPHA6 Missense_Mutation p.V594A 0.11 tolerated(0.6) probably_damaging(0.995) TCGA-EE-A29T-06 4 100518374 100518374 G A MTTP Missense_Mutation p.E354K 0.16 tolerated(0.33) benign(0.145) TCGA-EE-A29T-06 4 164393413 164393413 C G TKTL2 Missense_Mutation p.E492Q 0.19 tolerated(0.34) benign(0.023) TCGA-EE-A29T-06 4 165961379 165961379 C T TRIM60 Missense_Mutation p.P52L 0.12 tolerated(0.11) possibly_damaging(0.822) TCGA-EE-A29T-06 4 184572394 184572394 C A RWDD4 Missense_Mutation p.M64I 0.24 deleterious(0.01) possibly_damaging(0.472) TCGA-EE-A29T-06 4 186567923 186567923 G A SORBS2 Missense_Mutation p.P295S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A29T-06 4 187524505 187524505 G A FAT1 Silent p.I3725I 0.11 TCGA-EE-A29T-06 4 48173434 48173434 A G TEC Silent p.F92F 0.13 TCGA-EE-A29T-06 4 57333794 57333794 C T SRP72 5'UTR 0.31 TCGA-EE-A29T-06 4 57843752 57843752 G A NOA1 5'UTR 0.36 TCGA-EE-A29T-06 4 70146843 70146843 G A UGT2B28 Missense_Mutation p.E209K 0.13 deleterious(0) probably_damaging(0.994) TCGA-EE-A29T-06 4 74005457 74005457 G A ANKRD17 Missense_Mutation p.P959L 0.17 benign(0.019) TCGA-EE-A29T-06 4 79460487 79460487 G A FRAS1 Missense_Mutation p.D3780N 0.20 probably_damaging(0.978) TCGA-EE-A29T-06 4 88535203 88535203 T G DSPP Missense_Mutation p.D463E 0.17 probably_damaging(0.999) TCGA-EE-A29T-06 4 985238 985238 G A SLC26A1 Missense_Mutation p.P85L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 5 101709083 101709083 A C SLCO6A1 Silent p.V711V 0.13 TCGA-EE-A29T-06 5 121487946 121487946 C T ZNF474 Silent p.I87I 0.13 TCGA-EE-A29T-06 5 121759071 121759071 G A SNCAIP Silent p.V213V 0.18 TCGA-EE-A29T-06 5 1219023 1219023 G A SLC6A19 Silent p.V393V 0.20 TCGA-EE-A29T-06 5 132648397 132648397 C T FSTL4 Missense_Mutation p.D226N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 5 137766044 137766044 G T KDM3B Missense_Mutation p.G1667V 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A29T-06 5 138643900 138643900 T C MATR3 Missense_Mutation p.F266L 0.11 tolerated(0.06) possibly_damaging(0.878) TCGA-EE-A29T-06 5 140056349 140056349 G C HARS Missense_Mutation p.R362G 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 5 140230085 140230085 C T PCDHA9 Silent p.L669L 0.22 TCGA-EE-A29T-06 5 140348394 140348394 G A PCDHAC2 Silent p.V681V 0.20 TCGA-EE-A29T-06 5 140502262 140502262 C T PCDHB4 Nonsense_Mutation p.R228* 0.14 TCGA-EE-A29T-06 5 140537818 140537818 C A PCDHB17 3'UTR 0.17 TCGA-EE-A29T-06 5 140553131 140553131 G A PCDHB7 Missense_Mutation p.A239T 0.19 deleterious_low_confidence(0.03) benign(0.02) TCGA-EE-A29T-06 5 140615785 140615785 C T PCDHB18 RNA 0.12 TCGA-EE-A29T-06 5 1409199 1409199 G T SLC6A3 Silent p.A480A 0.07 TCGA-EE-A29T-06 5 147649610 147649610 C T SPINK13 5'UTR 0.48 TCGA-EE-A29T-06 5 149602231 149602231 G A CAMK2A 3'Flank 0.31 TCGA-EE-A29T-06 5 149767574 149767574 C T TCOF1 Missense_Mutation p.S990L 0.15 tolerated(0.08) benign(0.105) TCGA-EE-A29T-06 5 150311159 150311159 C T ZNF300P1 RNA 0.39 TCGA-EE-A29T-06 5 156482405 156482405 G A HAVCR1 Silent p.V62V 0.17 TCGA-EE-A29T-06 5 160113159 160113159 C T ATP10B Missense_Mutation p.D133N 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 5 160113166 160113166 C G ATP10B Missense_Mutation p.M130I 0.08 deleterious(0) benign(0.152) TCGA-EE-A29T-06 5 161116304 161116304 C T GABRA6 Missense_Mutation p.P164L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 5 176316509 176316509 C T HK3 Missense_Mutation p.E263K 0.11 tolerated(0.06) possibly_damaging(0.487) TCGA-EE-A29T-06 5 176721287 176721287 C T NSD1 Silent p.S2306S 0.36 TCGA-EE-A29T-06 5 180374696 180374696 C T BTNL8 Intron 0.46 TCGA-EE-A29T-06 5 21755762 21755762 A T CDH12 Missense_Mutation p.L608Q 0.08 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A29T-06 5 21817065 21817065 T A CDH12 Nonsense_Mutation p.K331* 0.10 TCGA-EE-A29T-06 5 24488070 24488070 A T CDH10 Missense_Mutation p.I690N 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A29T-06 5 32789414 32789414 G A NPR3 3'UTR 0.42 TCGA-EE-A29T-06 5 36064402 36064402 G A UGT3A2 Missense_Mutation p.H49Y 0.37 deleterious(0.02) benign(0.132) TCGA-EE-A29T-06 5 39201933 39201933 C T FYB Missense_Mutation p.G387E 0.41 tolerated(0.45) possibly_damaging(0.632) TCGA-EE-A29T-06 5 40681522 40681522 G A PTGER4 Missense_Mutation p.V143I 0.09 tolerated(1) benign(0.006) TCGA-EE-A29T-06 5 40934520 40934520 G A C7 Missense_Mutation p.G78R 0.39 tolerated(0.07) possibly_damaging(0.654) TCGA-EE-A29T-06 5 43446465 43446465 T A C5orf28 Silent p.P169P 0.17 TCGA-EE-A29T-06 5 43700295 43700295 A G NNT Missense_Mutation p.Y984C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A29T-06 5 66084499 66084499 G A MAST4 Silent p.G173G 0.17 TCGA-EE-A29T-06 5 79026044 79026044 G A CMYA5 Missense_Mutation p.E486K 0.10 possibly_damaging(0.636) TCGA-EE-A29T-06 5 79030152 79030152 C T CMYA5 Missense_Mutation p.S1855L 0.12 benign(0.001) TCGA-EE-A29T-06 5 80643716 80643716 G A ACOT12 Missense_Mutation p.S177F 0.14 tolerated(0.09) possibly_damaging(0.456) TCGA-EE-A29T-06 5 83356194 83356194 C T EDIL3 Silent p.R354R 0.16 TCGA-EE-A29T-06 5 89979848 89979848 G A GPR98 Missense_Mutation p.G2037E 0.17 probably_damaging(0.999) TCGA-EE-A29T-06 5 90136683 90136683 C T GPR98 Nonsense_Mutation p.Q5634* 0.27 TCGA-EE-A29T-06 6 100382375 100382375 C T MCHR2 Silent p.T202T 0.39 TCGA-EE-A29T-06 6 109854549 109854549 G A AK9 Missense_Mutation p.R1159C 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 6 116757311 116757311 C T DSE Silent p.L560L 0.54 TCGA-EE-A29T-06 6 11779129 11779129 G A ADTRP 5'Flank 0.30 TCGA-EE-A29T-06 6 129777485 129777485 G A LAMA2 Missense_Mutation p.G2238E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 6 132054739 132054739 G A ENPP3 Silent p.S655S 0.16 TCGA-EE-A29T-06 6 13365840 13365840 C T GFOD1 Missense_Mutation p.R103H 0.30 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A29T-06 6 170070706 170070706 C A WDR27 Missense_Mutation p.A139S 0.30 deleterious(0) probably_damaging(0.969) TCGA-EE-A29T-06 6 26205156 26205156 G A HIST1H4E Missense_Mutation p.G95E 0.14 deleterious(0.02) possibly_damaging(0.696) TCGA-EE-A29T-06 6 30297489 30297489 C T TRIM39 Missense_Mutation p.S132F 0.17 deleterious(0) possibly_damaging(0.667) TCGA-EE-A29T-06 6 30865345 30865345 C T DDR1 Silent p.D735D 0.21 TCGA-EE-A29T-06 6 31994894 31994894 C T C4B Silent p.L863L 0.09 TCGA-EE-A29T-06 6 32975973 32975973 G A HLA-DOA Missense_Mutation p.H50Y 0.52 tolerated(0.35) benign(0.011) TCGA-EE-A29T-06 6 41122009 41122009 G A TREML1 Silent p.L6L 0.38 TCGA-EE-A29T-06 6 41738677 41738677 G A FRS3 Missense_Mutation p.P387S 0.16 tolerated(0.2) benign(0.256) TCGA-EE-A29T-06 6 42227365 42227365 G A TRERF1 Missense_Mutation p.L661F 0.25 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A29T-06 6 56481113 56481113 G A DST Intron 0.11 TCGA-EE-A29T-06 6 73102446 73102446 G A RIMS1 Missense_Mutation p.D1518N 0.40 deleterious(0) possibly_damaging(0.6) TCGA-EE-A29T-06 6 78172162 78172162 A G HTR1B Missense_Mutation p.L320S 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A29T-06 7 100244379 100244379 G A ACTL6B Missense_Mutation p.R338C 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A29T-06 7 100420204 100420204 A T EPHB4 Missense_Mutation p.L166Q 0.41 deleterious(0) probably_damaging(0.994) TCGA-EE-A29T-06 7 101882853 101882853 C T CUX1 Silent p.F1303F 0.33 TCGA-EE-A29T-06 7 123152202 123152202 C T IQUB Missense_Mutation p.D65N 0.10 tolerated_low_confidence(0.22) benign(0.031) TCGA-EE-A29T-06 7 124404608 124404608 G A GPR37 Silent p.A141A 0.20 TCGA-EE-A29T-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.44 TCGA-EE-A29T-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-EE-A29T-06 7 141952147 141952147 C T PRSS58 Missense_Mutation p.G207E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 7 143657492 143657492 G A OR2F1 Silent p.R143R 0.28 TCGA-EE-A29T-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.42 deleterious(0.03) benign(0.003) TCGA-EE-A29T-06 7 150327185 150327185 C T GIMAP6 Missense_Mutation p.E16K 0.21 tolerated(0.92) unknown(0) TCGA-EE-A29T-06 7 150778904 150778904 C T TMUB1 Missense_Mutation p.S158N 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A29T-06 7 150779298 150779298 C T TMUB1 Missense_Mutation p.R118K 0.08 tolerated(0.1) probably_damaging(0.965) TCGA-EE-A29T-06 7 21742349 21742349 C T DNAH11 Missense_Mutation p.R2075C 0.16 probably_damaging(1) TCGA-EE-A29T-06 7 50530955 50530955 C T DDC Missense_Mutation p.D473N 0.18 tolerated(0.05) benign(0.001) TCGA-EE-A29T-06 7 5567644 5567644 C G ACTB Missense_Mutation p.M325I 0.09 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A29T-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.12 TCGA-EE-A29T-06 7 65553885 65553885 C T ASL Silent p.F270F 0.09 TCGA-EE-A29T-06 7 6797551 6797551 C T RSPH10B2 Silent p.L81L 0.18 TCGA-EE-A29T-06 7 73462834 73462834 G A ELN Silent p.G249G 0.20 TCGA-EE-A29T-06 7 73654311 73654311 C G RFC2 Missense_Mutation p.G217A 0.09 tolerated(0.07) possibly_damaging(0.504) TCGA-EE-A29T-06 7 82545543 82545543 G A PCLO Missense_Mutation p.S3920L 0.19 unknown(0) TCGA-EE-A29T-06 7 86493745 86493745 G A GRM3 3'UTR 0.21 TCGA-EE-A29T-06 7 97846692 97846692 T G TECPR1 3'UTR 0.10 TCGA-EE-A29T-06 7 98529133 98529133 G A TRRAP Missense_Mutation p.A1233T 0.09 benign(0.049) TCGA-EE-A29T-06 7 99169343 99169343 C T ZNF655 Nonsense_Mutation p.Q57* 0.16 TCGA-EE-A29T-06 7 99971782 99971782 G T PILRA Missense_Mutation p.E60D 0.16 tolerated(0.11) benign(0.389) TCGA-EE-A29T-06 8 105459571 105459571 T A DPYS Missense_Mutation p.N195I 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 8 113933874 113933874 G A CSMD3 Missense_Mutation p.H539Y 0.11 deleterious(0.04) probably_damaging(0.985) TCGA-EE-A29T-06 8 119122644 119122644 C T EXT1 Silent p.A214A 0.25 TCGA-EE-A29T-06 8 139158223 139158223 G A FAM135B Silent p.F1173F 0.23 TCGA-EE-A29T-06 8 144687915 144687915 G A PYCRL Silent p.A272A 0.12 TCGA-EE-A29T-06 8 145067042 145067043 GC - GRINA 3'UTR 0.28 TCGA-EE-A29T-06 8 145700630 145700630 G A FOXH1 Silent p.V63V 0.27 TCGA-EE-A29T-06 8 145999265 145999265 G A ZNF34 Missense_Mutation p.H357Y 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A29T-06 8 21882729 21882729 G A NPM2 5'UTR 0.32 TCGA-EE-A29T-06 8 3045433 3045433 C T CSMD1 Missense_Mutation p.D1860N 0.26 probably_damaging(0.999) TCGA-EE-A29T-06 8 3165891 3165891 G T CSMD1 Missense_Mutation p.L1256M 0.14 benign(0.076) TCGA-EE-A29T-06 8 32453471 32453471 G A NRG1 Missense_Mutation p.E76K 0.21 tolerated(0.07) benign(0.16) TCGA-EE-A29T-06 8 3267060 3267060 G A CSMD1 Silent p.F543F 0.22 TCGA-EE-A29T-06 8 3889468 3889468 C T CSMD1 Missense_Mutation p.G190E 0.38 probably_damaging(1) TCGA-EE-A29T-06 8 42611890 42611890 G A CHRNA6 Missense_Mutation p.P151L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 8 52320664 52320664 C T PXDNL Missense_Mutation p.E1174K 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A29T-06 8 53570357 53570357 C T RB1CC1 Missense_Mutation p.D678N 0.07 deleterious_low_confidence(0.02) benign(0.388) TCGA-EE-A29T-06 8 55540148 55540148 G A RP1 Missense_Mutation p.D1236N 0.29 tolerated(0.22) benign(0.006) TCGA-EE-A29T-06 8 55541975 55541975 G A RP1 Missense_Mutation p.E1845K 0.31 tolerated(0.15) possibly_damaging(0.835) TCGA-EE-A29T-06 8 68430207 68430207 C T CPA6 Missense_Mutation p.G90S 0.34 tolerated(0.44) benign(0.002) TCGA-EE-A29T-06 8 69552674 69552674 A G C8orf34 Missense_Mutation p.N390S 0.15 tolerated(1) benign(0.269) TCGA-EE-A29T-06 8 87479180 87479180 T C WWP1 3'UTR 0.38 TCGA-EE-A29T-06 8 93088357 93088357 C T RUNX1T1 Intron 0.43 TCGA-EE-A29T-06 9 104432909 104432909 G A GRIN3A Silent p.F595F 0.17 TCGA-EE-A29T-06 9 105767367 105767367 G A CYLC2 Missense_Mutation p.E152K 0.30 tolerated(0.46) unknown(0) TCGA-EE-A29T-06 9 119413929 119413929 G A ASTN2 Missense_Mutation p.P933S 0.15 deleterious(0.03) unknown(0) TCGA-EE-A29T-06 9 121930502 121930502 C T BRINP1 Silent p.R382R 0.17 TCGA-EE-A29T-06 9 125281478 125281478 G T OR1J4 Missense_Mutation p.W20L 0.15 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A29T-06 9 125289468 125289468 G A OR1N1 Silent p.V35V 0.13 TCGA-EE-A29T-06 9 126143878 126143878 G A DENND1A Missense_Mutation p.P955S 0.31 tolerated_low_confidence(0.49) benign(0.003) TCGA-EE-A29T-06 9 131568246 131568246 G A TBC1D13 Missense_Mutation p.A343T 0.27 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A29T-06 9 133943608 133943608 G A LAMC3 Missense_Mutation p.G913S 0.17 deleterious(0) probably_damaging(0.991) TCGA-EE-A29T-06 9 136260750 136260750 G A C9orf96 Silent p.R242R 0.29 TCGA-EE-A29T-06 9 33295316 33295330 GAGGGTTGACCAAGA - NFX1 In_Frame_Del p.R309_E313del 0.22 TCGA-EE-A29T-06 9 37442342 37442343 - CTA ZBTB5 In_Frame_Ins p.S69dup 0.10 TCGA-EE-A29T-06 9 87563410 87563410 G A NTRK2 Missense_Mutation p.D600N 0.35 deleterious(0) probably_damaging(0.963) TCGA-EE-A29T-06 9 94842318 94842318 C A SPTLC1 Missense_Mutation p.R136I 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 9 95847104 95847104 C T SUSD3 3'UTR 0.18 TCGA-EE-A29T-06 X 10181845 10181845 G A CLCN4 Silent p.G567G 0.24 TCGA-EE-A29T-06 X 103349591 103349591 C T SLC25A53 Missense_Mutation p.R117H 0.12 tolerated(0.1) benign(0.036) TCGA-EE-A29T-06 X 105855181 105855181 C T CXorf57 5'Flank 0.15 TCGA-EE-A29T-06 X 105905302 105905302 G C CXorf57 Missense_Mutation p.R679T 0.14 tolerated(0.16) benign(0.08) TCGA-EE-A29T-06 X 106397462 106397462 G A NUP62CL Missense_Mutation p.P70L 0.20 deleterious(0) possibly_damaging(0.579) TCGA-EE-A29T-06 X 106841246 106841246 G T FRMPD3 Missense_Mutation p.V746L 0.21 deleterious(0) benign(0.102) TCGA-EE-A29T-06 X 107381340 107381340 C A ATG4A Intron 0.08 TCGA-EE-A29T-06 X 107430382 107430382 G A COL4A6 Missense_Mutation p.P633L 0.26 probably_damaging(0.994) TCGA-EE-A29T-06 X 109765019 109765019 G A TDGF1P3 RNA 0.29 TCGA-EE-A29T-06 X 115303752 115303752 G T AGTR2 Missense_Mutation p.K73N 0.21 tolerated(0.3) benign(0.029) TCGA-EE-A29T-06 X 118284320 118284320 C T KIAA1210 Missense_Mutation p.E75K 0.22 tolerated_low_confidence(0.43) benign(0.182) TCGA-EE-A29T-06 X 118377142 118377142 G A PGRMC1 Silent p.L171L 0.14 TCGA-EE-A29T-06 X 119510247 119510247 C T ATP1B4 Missense_Mutation p.R258C 0.18 tolerated(0.14) possibly_damaging(0.697) TCGA-EE-A29T-06 X 123171393 123171394 - GATA STAG2 Frame_Shift_Ins p.E104Dfs*7 0.34 TCGA-EE-A29T-06 X 123630865 123630865 C T TENM1 Splice_Site p.X1232_splice 0.12 TCGA-EE-A29T-06 X 134947978 134947978 G A CT45A5 Missense_Mutation p.P116L 0.35 tolerated(0.11) benign(0.006) TCGA-EE-A29T-06 X 135582921 135582921 C T HTATSF1 Missense_Mutation p.L172F 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A29T-06 X 138870379 138870379 C T ATP11C Missense_Mutation p.E501K 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A29T-06 X 140270735 140270735 C T LDOC1 3'UTR 0.54 TCGA-EE-A29T-06 X 1407442 1407442 C T CSF2RA Missense_Mutation p.R84C 0.13 deleterious(0.04) benign(0.002) TCGA-EE-A29T-06 X 150891286 150891286 C T FATE1 3'UTR 0.43 TCGA-EE-A29T-06 X 151869869 151869869 G A MAGEA6 Missense_Mutation p.D187N 0.23 tolerated(0.16) benign(0.201) TCGA-EE-A29T-06 X 151908875 151908875 G A CSAG1 Silent p.R38R 0.34 TCGA-EE-A29T-06 X 152158823 152158823 C A PNMA5 Missense_Mutation p.M440I 0.06 tolerated(0.23) benign(0.041) TCGA-EE-A29T-06 X 152612986 152612986 C A ZNF275 Silent p.A281A 0.11 TCGA-EE-A29T-06 X 153760406 153760406 C A G6PD Missense_Mutation p.G515V 0.40 deleterious(0) probably_damaging(0.96) TCGA-EE-A29T-06 X 153880777 153880777 A G CTAG2 Missense_Mutation p.L133P 0.21 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A29T-06 X 23411269 23411269 A T PTCHD1 Missense_Mutation p.Q545L 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A29T-06 X 26211914 26211914 C T MAGEB6 5'UTR 0.26 TCGA-EE-A29T-06 X 34149398 34149398 C T FAM47A Missense_Mutation p.G333E 0.36 tolerated(0.37) benign(0.075) TCGA-EE-A29T-06 X 36091444 36091444 G A CHDC2 Missense_Mutation p.G127R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A29T-06 X 47836836 47836836 C T ZNF182 Missense_Mutation p.R217Q 0.29 tolerated(0.38) benign(0) TCGA-EE-A29T-06 X 47842375 47842375 C T ZNF182 Missense_Mutation p.G88E 0.28 tolerated(0.76) benign(0) TCGA-EE-A29T-06 X 48403396 48403396 C T TBC1D25 Missense_Mutation p.R125W 0.25 deleterious(0) possibly_damaging(0.798) TCGA-EE-A29T-06 X 48826219 48826219 C T KCND1 Missense_Mutation p.E154K 0.29 tolerated(0.15) benign(0.028) TCGA-EE-A29T-06 X 50146129 50146129 G A DGKK RNA 0.24 TCGA-EE-A29T-06 X 52893847 52893847 C T XAGE3 Silent p.G90G 0.23 TCGA-EE-A29T-06 X 55041298 55041298 C T ALAS2 Missense_Mutation p.G440E 0.18 tolerated(0.1) possibly_damaging(0.862) TCGA-EE-A29T-06 X 63410058 63410058 G A AMER1 Nonsense_Mutation p.Q1037* 0.29 TCGA-EE-A29T-06 X 70148386 70148386 G A SLC7A3 Silent p.F209F 0.34 TCGA-EE-A29T-06 X 70521783 70521783 G A ITGB1BP2 Intron 0.34 TCGA-EE-A29T-06 X 70824016 70824016 G A ACRC Missense_Mutation p.D297N 0.15 unknown(0) TCGA-EE-A29T-06 X 70836809 70836809 G A CXCR3 Silent p.T218T 0.11 TCGA-EE-A29T-06 X 72667221 72667221 C T CDX4 Silent p.F44F 0.30 TCGA-EE-A29T-06 X 73068079 73068079 G A XIST RNA 0.22 TCGA-EE-A29T-06 X 73068080 73068080 G A XIST RNA 0.22 TCGA-EE-A29T-06 X 8501043 8501043 C T KAL1 Missense_Mutation p.R679K 0.20 tolerated_low_confidence(0.51) probably_damaging(0.921) TCGA-EE-A29T-06 X 99942334 99942334 G A SYTL4 Intron 0.24 TCGA-EE-A29V-06 10 101578582 101578582 C T ABCC2 Silent p.I769I 0.31 TCGA-EE-A29V-06 10 104165107 104165107 C T PSD Silent p.R774R 0.32 TCGA-EE-A29V-06 10 104174892 104174892 G A PSD Silent p.S284S 0.27 TCGA-EE-A29V-06 10 104174893 104174893 G A PSD Missense_Mutation p.S284F 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 10 104183554 104183554 C T CUEDC2 Splice_Site p.X219_splice 0.42 TCGA-EE-A29V-06 10 104597026 104597026 G A CYP17A1 Silent p.L31L 0.27 TCGA-EE-A29V-06 10 105006395 105006395 A G RPEL1 Silent p.R214R 0.35 TCGA-EE-A29V-06 10 106737200 106737200 C T SORCS3 Silent p.L301L 0.25 TCGA-EE-A29V-06 10 106971008 106971008 G A SORCS3 Missense_Mutation p.G792E 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29V-06 10 114044382 114044382 G A TECTB Missense_Mutation p.G56R 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A29V-06 10 115350452 115350452 C T NRAP Missense_Mutation p.R1614K 0.21 tolerated(1) benign(0.007) TCGA-EE-A29V-06 10 118138944 118138944 G A CCDC172 3'UTR 0.67 TCGA-EE-A29V-06 10 124377706 124377706 G A DMBT1 Missense_Mutation p.G1560R 0.33 tolerated(0.12) probably_damaging(1) TCGA-EE-A29V-06 10 126097393 126097393 G A OAT Missense_Mutation p.A114V 0.44 deleterious(0.02) benign(0.335) TCGA-EE-A29V-06 10 127431743 127431743 C T EDRF1 Missense_Mutation p.P830S 0.41 tolerated(0.39) benign(0.01) TCGA-EE-A29V-06 10 134021640 134021640 C T STK32C Silent p.Q445Q 0.36 TCGA-EE-A29V-06 10 134188633 134188633 C G LRRC27 Missense_Mutation p.R494G 0.26 tolerated(0.26) possibly_damaging(0.726) TCGA-EE-A29V-06 10 18828384 18828384 G A CACNB2 Missense_Mutation p.E572K 0.38 tolerated_low_confidence(0.1) benign(0.138) TCGA-EE-A29V-06 10 21074700 21074700 C T NEBL Silent p.A1007A 0.59 TCGA-EE-A29V-06 10 21806505 21806505 T C SKIDA1 Missense_Mutation p.I83V 0.50 deleterious(0) probably_damaging(0.987) TCGA-EE-A29V-06 10 26482238 26482238 C T MYO3A Missense_Mutation p.H1515Y 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29V-06 10 35464582 35464582 T A CREM Intron 0.26 TCGA-EE-A29V-06 10 38121310 38121310 G A ZNF248 Missense_Mutation p.R325C 0.31 tolerated(0.11) benign(0.153) TCGA-EE-A29V-06 10 38121311 38121311 G A ZNF248 Silent p.L324L 0.31 TCGA-EE-A29V-06 10 50574372 50574372 G A DRGX Missense_Mutation p.P199L 0.39 deleterious(0) benign(0.038) TCGA-EE-A29V-06 10 50691556 50691556 G A ERCC6 Silent p.L610L 0.30 TCGA-EE-A29V-06 10 5242283 5242283 A G AKR1C4 Missense_Mutation p.K75R 0.32 tolerated(0.14) benign(0.05) TCGA-EE-A29V-06 10 5436106 5436106 C T TUBAL3 Missense_Mutation p.V239I 0.40 deleterious_low_confidence(0) benign(0.019) TCGA-EE-A29V-06 10 55582303 55582303 C T PCDH15 Missense_Mutation p.R1730K 0.32 tolerated_low_confidence(0.24) benign(0.002) TCGA-EE-A29V-06 10 55839163 55839163 C T PCDH15 Silent p.G673G 0.31 TCGA-EE-A29V-06 10 6005800 6005800 G A IL15RA Silent p.D96D 0.58 TCGA-EE-A29V-06 10 61834849 61834849 T C ANK3 Silent p.Q1930Q 0.26 TCGA-EE-A29V-06 10 61834949 61834949 G A ANK3 Missense_Mutation p.S1897F 0.45 probably_damaging(0.979) TCGA-EE-A29V-06 10 6255623 6255623 C T PFKFB3 Silent p.I38I 0.31 TCGA-EE-A29V-06 10 63661961 63661961 A T ARID5B Missense_Mutation p.Y22F 0.32 deleterious(0) probably_damaging(0.931) TCGA-EE-A29V-06 10 63852268 63852268 C T ARID5B Silent p.L1016L 0.18 TCGA-EE-A29V-06 10 69651312 69651312 G A SIRT1 Silent p.K314K 0.34 TCGA-EE-A29V-06 10 70446316 70446316 C T TET1 Silent p.P1752P 0.30 TCGA-EE-A29V-06 10 70450796 70450796 C T TET1 Missense_Mutation p.P1879L 0.49 tolerated(0.12) benign(0.075) TCGA-EE-A29V-06 10 70670845 70670845 T A DDX50 Missense_Mutation p.F161Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 10 70670979 70670979 A G DDX50 Missense_Mutation p.I206V 0.34 tolerated(0.28) benign(0.063) TCGA-EE-A29V-06 10 71020984 71020984 G A HKDC1 Missense_Mutation p.G769E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 10 71020985 71020985 G A HKDC1 Silent p.G769G 0.34 TCGA-EE-A29V-06 10 71648064 71648064 C T COL13A1 Missense_Mutation p.P176L 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29V-06 10 72298880 72298880 C T PALD1 Silent p.D534D 0.40 TCGA-EE-A29V-06 10 72468482 72468482 G A ADAMTS14 Missense_Mutation p.R273H 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29V-06 10 73553142 73553142 C T CDH23 5'Flank 0.31 TCGA-EE-A29V-06 10 74806805 74806805 G A P4HA1 Missense_Mutation p.P319S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29V-06 10 75258871 75258871 C T USP54 Missense_Mutation p.G1524E 0.33 deleterious_low_confidence(0.04) benign(0.079) TCGA-EE-A29V-06 10 75391751 75391751 C T MYOZ1 Silent p.G279G 0.28 TCGA-EE-A29V-06 10 75567398 75567398 G A NDST2 Missense_Mutation p.P250L 0.39 tolerated(0.64) benign(0.003) TCGA-EE-A29V-06 10 75607101 75607101 G A CAMK2G Missense_Mutation p.P234L 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29V-06 10 78637626 78637626 T C KCNMA1 Silent p.E1125E 0.40 TCGA-EE-A29V-06 10 78646936 78646936 G A KCNMA1 3'Flank 0.34 TCGA-EE-A29V-06 10 78850220 78850220 G A KCNMA1 Silent p.F424F 0.29 TCGA-EE-A29V-06 10 79785850 79785850 A C POLR3A Splice_Site p.X60_splice 0.31 TCGA-EE-A29V-06 10 85991944 85991944 G A LRIT1 Silent p.I537I 0.29 TCGA-EE-A29V-06 10 888923 888923 G A LARP4B Missense_Mutation p.H199Y 0.30 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A29V-06 10 96802811 96802811 G A CYP2C8 Missense_Mutation p.H329Y 0.20 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A29V-06 10 97916114 97916114 A G ZNF518A RNA 0.30 TCGA-EE-A29V-06 11 108139249 108139249 C T ATM Silent p.S917S 0.70 TCGA-EE-A29V-06 11 113103520 113103520 C T NCAM1 Silent p.F551F 0.62 TCGA-EE-A29V-06 11 117251344 117251344 G A CEP164 Silent p.L444L 0.45 TCGA-EE-A29V-06 11 117779500 117779500 C T TMPRSS13 Splice_Site p.X370_splice 0.68 TCGA-EE-A29V-06 11 117789427 117789427 G A TMPRSS13 Missense_Mutation p.P50S 0.42 tolerated_low_confidence(0.41) benign(0) TCGA-EE-A29V-06 11 118373665 118373665 C T KMT2A Missense_Mutation p.S2353F 0.58 benign(0.082) TCGA-EE-A29V-06 11 120187960 120187960 G A POU2F3 Silent p.G388G 0.36 TCGA-EE-A29V-06 11 123893899 123893899 C T OR10G9 Silent p.F60F 0.25 TCGA-EE-A29V-06 11 124413323 124413323 G A OR8B12 Silent p.I76I 0.40 TCGA-EE-A29V-06 11 124794925 124794925 C T HEPACAM Silent p.L42L 0.52 TCGA-EE-A29V-06 11 130341230 130341230 G T ADAMTS15 Missense_Mutation p.G677V 0.38 deleterious(0) probably_damaging(0.957) TCGA-EE-A29V-06 11 14284296 14284296 G A RP11-21L19.1 3'Flank 0.52 TCGA-EE-A29V-06 11 18047183 18047183 G A TPH1 Missense_Mutation p.S290F 0.60 deleterious(0.03) possibly_damaging(0.897) TCGA-EE-A29V-06 11 20177857 20177857 G A DBX1 Missense_Mutation p.S351L 0.54 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-EE-A29V-06 11 22396394 22396394 C T SLC17A6 Missense_Mutation p.L379F 0.48 deleterious(0) benign(0.098) TCGA-EE-A29V-06 11 2436352 2436352 G A TRPM5 Missense_Mutation p.A493V 0.50 tolerated(0.26) benign(0.004) TCGA-EE-A29V-06 11 34152950 34152950 C T NAT10 Silent p.S464S 0.54 TCGA-EE-A29V-06 11 4608931 4608931 G A OR52I2 Missense_Mutation p.D297N 0.44 tolerated(1) benign(0.033) TCGA-EE-A29V-06 11 49831499 49831499 C T RP11-707M1.1 RNA 0.56 TCGA-EE-A29V-06 11 5275658 5275658 T G HBG2 Missense_Mutation p.K60T 0.25 deleterious(0) probably_damaging(0.935) TCGA-EE-A29V-06 11 5462626 5462626 G A OR51I1 Missense_Mutation p.S40F 0.60 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 11 55135918 55135918 C T OR4A15 Nonsense_Mutation p.Q187* 0.29 TCGA-EE-A29V-06 11 55541213 55541213 C T OR5D13 Silent p.I100I 0.27 TCGA-EE-A29V-06 11 55563136 55563136 C T OR5D14 Silent p.L35L 0.37 TCGA-EE-A29V-06 11 55587751 55587751 C T OR5D18 Missense_Mutation p.L216F 0.33 tolerated(0.08) benign(0.25) TCGA-EE-A29V-06 11 55659176 55659176 C T TRIM51 3'UTR 0.35 TCGA-EE-A29V-06 11 5566730 5566730 G A OR52H1 Silent p.I8I 0.53 TCGA-EE-A29V-06 11 55873109 55873109 C T OR8H2 Silent p.I197I 0.26 TCGA-EE-A29V-06 11 55904565 55904565 G A OR8J3 Silent p.S210S 0.31 TCGA-EE-A29V-06 11 55999754 55999754 G A OR5T2 Missense_Mutation p.S303F 0.30 deleterious(0.02) benign(0.429) TCGA-EE-A29V-06 11 56058539 56058539 G A OR8H1 5'UTR 0.38 TCGA-EE-A29V-06 11 56185322 56185322 G A OR5R1 Silent p.P129P 0.38 TCGA-EE-A29V-06 11 56230376 56230376 C T OR5M9 Missense_Mutation p.G168R 0.29 tolerated(0.11) possibly_damaging(0.678) TCGA-EE-A29V-06 11 56310298 56310298 A T OR5M11 Missense_Mutation p.F146I 0.25 tolerated(0.57) benign(0.008) TCGA-EE-A29V-06 11 56468463 56468463 C T OR9G1 Silent p.F200F 0.12 TCGA-EE-A29V-06 11 57971029 57971029 C T OR1S2 Missense_Mutation p.E209K 0.32 tolerated(0.08) possibly_damaging(0.734) TCGA-EE-A29V-06 11 58605776 58605776 G A GLYATL2 Silent p.A48A 0.27 TCGA-EE-A29V-06 11 58949292 58949292 G C DTX4 Missense_Mutation p.D98H 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 11 5905615 5905615 C T OR52E4 Silent p.F31F 0.43 TCGA-EE-A29V-06 11 59190041 59190041 T C OR5A2 Missense_Mutation p.N129S 0.32 tolerated(0.29) benign(0.009) TCGA-EE-A29V-06 11 59224926 59224926 C T OR4D6 Missense_Mutation p.P165S 0.33 tolerated(0.1) benign(0.39) TCGA-EE-A29V-06 11 59861437 59861437 G A MS4A2 Missense_Mutation p.E180K 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A29V-06 11 59997464 59997464 C T MS4A4E Missense_Mutation p.G22E 0.24 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A29V-06 11 59997465 59997465 C T MS4A4E Missense_Mutation p.G22R 0.27 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-EE-A29V-06 11 60559780 60559780 T A MS4A10 Missense_Mutation p.S116T 0.28 tolerated(0.57) benign(0.348) TCGA-EE-A29V-06 11 61488326 61488326 C T DAGLA Missense_Mutation p.R91C 0.44 deleterious(0) probably_damaging(0.995) TCGA-EE-A29V-06 11 62378444 62378444 G A EML3 Missense_Mutation p.S158F 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A29V-06 11 62378722 62378722 G A EML3 Missense_Mutation p.P97S 0.34 tolerated(0.23) benign(0.003) TCGA-EE-A29V-06 11 62378723 62378723 G A EML3 Silent p.S96S 0.34 TCGA-EE-A29V-06 11 62520256 62520256 G A ZBTB3 Missense_Mutation p.P344L 0.38 tolerated(0.19) benign(0.003) TCGA-EE-A29V-06 11 62520257 62520257 G A ZBTB3 Missense_Mutation p.P344S 0.39 tolerated(0.3) benign(0.071) TCGA-EE-A29V-06 11 62752030 62752030 G A SLC22A6 Missense_Mutation p.P45S 0.17 tolerated(0.07) probably_damaging(0.99) TCGA-EE-A29V-06 11 62997106 62997106 G A SLC22A25 Silent p.L7L 0.44 TCGA-EE-A29V-06 11 63273993 63273993 C T LGALS12 Silent p.F43F 0.29 TCGA-EE-A29V-06 11 63714427 63714427 G A NAA40 Missense_Mutation p.G36E 0.39 tolerated(1) benign(0) TCGA-EE-A29V-06 11 64360946 64360946 C T SLC22A12 Silent p.F192F 0.41 TCGA-EE-A29V-06 11 64847068 64847068 G A CDCA5 Silent p.S145S 0.27 TCGA-EE-A29V-06 11 66083162 66083162 G A CD248 Missense_Mutation p.S446F 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29V-06 11 66813297 66813297 C T SYT12 Silent p.N347N 0.45 TCGA-EE-A29V-06 11 66813298 66813298 C T SYT12 Missense_Mutation p.P348S 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 11 66838906 66838906 G A RHOD Missense_Mutation p.G156S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 11 67012770 67012770 C T KDM2A Silent p.S558S 0.39 TCGA-EE-A29V-06 11 67262362 67262362 G A PITPNM1 Silent p.F899F 0.41 TCGA-EE-A29V-06 11 68216526 68216526 G A LRP5 Silent p.T1612T 0.25 TCGA-EE-A29V-06 11 68216527 68216527 G A LRP5 Missense_Mutation p.D1613N 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A29V-06 11 68854621 68854621 C T TPCN2 Silent p.P709P 0.16 TCGA-EE-A29V-06 11 70331925 70331925 G A SHANK2 Silent p.I1492I 0.38 TCGA-EE-A29V-06 11 73022807 73022807 C T ARHGEF17 Missense_Mutation p.P1042S 0.18 tolerated(0.41) benign(0.005) TCGA-EE-A29V-06 11 73073628 73073628 G A ARHGEF17 Silent p.S1615S 0.24 TCGA-EE-A29V-06 11 73073629 73073629 G A ARHGEF17 Missense_Mutation p.G1616S 0.24 tolerated(1) benign(0.222) TCGA-EE-A29V-06 11 73789508 73789508 G A C2CD3 Missense_Mutation p.H1419Y 0.29 deleterious(0) possibly_damaging(0.908) TCGA-EE-A29V-06 11 7439308 7439308 C T SYT9 Missense_Mutation p.P429L 0.43 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A29V-06 11 74716515 74716515 C T NEU3 Missense_Mutation p.P122S 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 11 76256911 76256911 C T C11orf30 Missense_Mutation p.T1115I 0.26 deleterious_low_confidence(0.01) benign(0.161) TCGA-EE-A29V-06 11 76870559 76870559 C T MYO7A Missense_Mutation p.S357F 0.41 deleterious(0) benign(0.22) TCGA-EE-A29V-06 11 76910665 76910665 G A MYO7A Missense_Mutation p.G1552R 0.50 tolerated(0.59) benign(0.111) TCGA-EE-A29V-06 11 76910695 76910695 G A MYO7A Missense_Mutation p.G1562R 0.43 deleterious(0.02) probably_damaging(1) TCGA-EE-A29V-06 11 8060409 8060409 C T TUB 5'UTR 0.56 TCGA-EE-A29V-06 11 8132470 8132470 C G RIC3 Silent p.S295S 0.52 TCGA-EE-A29V-06 11 86131096 86131096 G A CCDC81 Splice_Site p.X606_splice 0.31 TCGA-EE-A29V-06 11 92531158 92531158 C T FAT3 Missense_Mutation p.S1660F 0.31 probably_damaging(0.992) TCGA-EE-A29V-06 11 94731693 94731693 C T KDM4D Missense_Mutation p.P386L 0.35 tolerated(0.15) benign(0.003) TCGA-EE-A29V-06 12 100564765 100564765 C T RP11-175P13.3 3'Flank 0.40 TCGA-EE-A29V-06 12 101748767 101748767 C T UTP20 Silent p.S1755S 0.29 TCGA-EE-A29V-06 12 102811752 102811752 C T IGF1 Silent p.T144T 0.36 TCGA-EE-A29V-06 12 103700110 103700110 C T C12orf42 Silent p.R91R 0.47 TCGA-EE-A29V-06 12 104031013 104031013 C - STAB2 Frame_Shift_Del p.I238Sfs*85 0.26 TCGA-EE-A29V-06 12 104142832 104142832 G A STAB2 Silent p.K2112K 0.39 TCGA-EE-A29V-06 12 104142833 104142833 G A STAB2 Missense_Mutation p.G2113R 0.39 deleterious(0) probably_damaging(0.995) TCGA-EE-A29V-06 12 10539580 10539580 C T KLRK1 Missense_Mutation p.D24N 0.64 tolerated(0.22) benign(0) TCGA-EE-A29V-06 12 107002601 107002601 G A RFX4 Missense_Mutation p.E33K 0.35 deleterious(0.03) possibly_damaging(0.548) TCGA-EE-A29V-06 12 108589580 108589580 C T WSCD2 5'UTR 0.29 TCGA-EE-A29V-06 12 109673144 109673144 C T ACACB Silent p.L1458L 0.25 TCGA-EE-A29V-06 12 109862586 109862586 G A MYO1H Missense_Mutation p.E544K 0.29 tolerated(0.43) benign(0.407) TCGA-EE-A29V-06 12 110719652 110719652 G A ATP2A2 Missense_Mutation p.E20K 0.40 tolerated(0.3) benign(0.136) TCGA-EE-A29V-06 12 112673402 112673402 G A HECTD4 Silent p.V1731V 0.38 TCGA-EE-A29V-06 12 113314570 113314570 C T RPH3A Missense_Mutation p.S357F 0.22 deleterious(0.04) benign(0.284) TCGA-EE-A29V-06 12 113744325 113744325 G A SLC8B1 Silent p.S489S 0.35 TCGA-EE-A29V-06 12 11546356 11546356 C T PRB2 Missense_Mutation p.G219E 0.41 tolerated(0.54) unknown(0) TCGA-EE-A29V-06 12 117703233 117703233 C T NOS1 Missense_Mutation p.G675E 0.58 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 12 120602154 120602154 G C GCN1L1 Missense_Mutation p.L612V 0.37 benign(0.092) TCGA-EE-A29V-06 12 121009075 121009075 C T RNF10 Missense_Mutation p.P708L 0.20 tolerated(0.46) benign(0.028) TCGA-EE-A29V-06 12 121431395 121431395 G A HNF1A Missense_Mutation p.R200Q 0.32 deleterious(0.02) possibly_damaging(0.466) TCGA-EE-A29V-06 12 124422110 124422110 G A CCDC92 Missense_Mutation p.A164V 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 12 125441594 125441594 G A DHX37 Missense_Mutation p.P749S 0.38 tolerated(0.49) benign(0.017) TCGA-EE-A29V-06 12 129694134 129694134 C T TMEM132D Silent p.E458E 0.45 TCGA-EE-A29V-06 12 15035186 15035186 C T MGP Missense_Mutation p.E92K 0.58 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 12 18234224 18234224 C T RERGL Silent p.L173L 0.43 TCGA-EE-A29V-06 12 19285377 19285377 T C PLEKHA5 Missense_Mutation p.Y74H 0.47 deleterious(0.04) possibly_damaging(0.682) TCGA-EE-A29V-06 12 21205109 21205109 G A SLCO1B7 Missense_Mutation p.E424K 0.62 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A29V-06 12 21728963 21728963 C T GYS2 Missense_Mutation p.G111E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 12 2224674 2224674 C T CACNA1C Missense_Mutation p.P112S 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 12 31862360 31862360 C A AMN1 Splice_Site p.X13_splice 0.46 TCGA-EE-A29V-06 12 41966312 41966312 C T PDZRN4 Silent p.P577P 0.47 TCGA-EE-A29V-06 12 43822444 43822444 C T ADAMTS20 Nonsense_Mutation p.W1216* 0.44 TCGA-EE-A29V-06 12 45410375 45410375 C T DBX2 Silent p.R238R 0.23 TCGA-EE-A29V-06 12 47629420 47629420 G A PCED1B Missense_Mutation p.E192K 0.28 tolerated(0.15) benign(0) TCGA-EE-A29V-06 12 48483073 48483073 G A SENP1 Intron 0.27 TCGA-EE-A29V-06 12 48738484 48738484 G A ZNF641 Missense_Mutation p.P154S 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A29V-06 12 49948157 49948157 G A KCNH3 Silent p.R652R 0.30 TCGA-EE-A29V-06 12 50190432 50190432 G A NCKAP5L Missense_Mutation p.P404L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-EE-A29V-06 12 50190433 50190433 G A NCKAP5L Missense_Mutation p.P404S 0.17 tolerated_low_confidence(0.05) probably_damaging(0.992) TCGA-EE-A29V-06 12 51584284 51584284 C T POU6F1 Missense_Mutation p.E218K 0.36 tolerated(0.61) benign(0.409) TCGA-EE-A29V-06 12 51717903 51717903 G A BIN2 5'UTR 0.37 TCGA-EE-A29V-06 12 52312851 52312851 T A ACVRL1 Nonsense_Mutation p.C443* 0.47 TCGA-EE-A29V-06 12 52708528 52708528 C T KRT83 Missense_Mutation p.V457I 0.29 tolerated(0.17) benign(0.005) TCGA-EE-A29V-06 12 52914057 52914057 G A KRT5 Silent p.S8S 0.90 TCGA-EE-A29V-06 12 53070108 53070108 C T KRT1 Missense_Mutation p.D476N 0.29 deleterious(0) probably_damaging(0.985) TCGA-EE-A29V-06 12 53427604 53427604 C T EIF4B Missense_Mutation p.P332S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29V-06 12 53447269 53447269 G A TENC1 Intron 0.50 TCGA-EE-A29V-06 12 55794778 55794778 C T OR6C65 Missense_Mutation p.P156S 0.33 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A29V-06 12 55846588 55846588 T C OR6C2 Silent p.V197V 0.37 TCGA-EE-A29V-06 12 56385937 56385937 C T RAB5B Missense_Mutation p.R197W 0.27 deleterious(0) possibly_damaging(0.623) TCGA-EE-A29V-06 12 58016339 58016339 C T SLC26A10 Intron 0.27 TCGA-EE-A29V-06 12 58143034 58143034 G A CDK4 Silent p.P250P 0.31 TCGA-EE-A29V-06 12 58143035 58143035 G T CDK4 Missense_Mutation p.P250H 0.31 tolerated(0.38) benign(0.012) TCGA-EE-A29V-06 12 6125316 6125316 G A VWF Silent p.I1798I 0.43 TCGA-EE-A29V-06 12 64491137 64491137 G A SRGAP1 Missense_Mutation p.D599N 0.45 deleterious(0) possibly_damaging(0.513) TCGA-EE-A29V-06 12 69047971 69047971 C T RAP1B Missense_Mutation p.S88F 0.23 deleterious(0) benign(0.382) TCGA-EE-A29V-06 12 69047972 69047972 C T RAP1B Silent p.S88S 0.24 TCGA-EE-A29V-06 12 6933459 6933459 A G GPR162 Missense_Mutation p.K132R 0.52 tolerated(0.14) benign(0.166) TCGA-EE-A29V-06 12 70949670 70949670 C T PTPRB Missense_Mutation p.S1658N 0.42 tolerated(0.12) benign(0.359) TCGA-EE-A29V-06 12 7556243 7556243 C T CD163L1 Nonsense_Mutation p.W432* 0.29 TCGA-EE-A29V-06 12 75905402 75905402 G A KRR1 5'Flank 0.35 TCGA-EE-A29V-06 12 78360052 78360052 G A NAV3 Missense_Mutation p.G153E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 12 81769697 81769697 C T PPFIA2 Missense_Mutation p.E337K 0.29 deleterious(0) possibly_damaging(0.607) TCGA-EE-A29V-06 12 85450714 85450714 T G LRRIQ1 Missense_Mutation p.C715G 0.31 tolerated(0.12) benign(0.012) TCGA-EE-A29V-06 12 85515612 85515612 G A LRRIQ1 Missense_Mutation p.R1172Q 0.35 tolerated(0.94) benign(0.005) TCGA-EE-A29V-06 12 88589038 88589038 A G TMTC3 Missense_Mutation p.D786G 0.40 tolerated(0.08) benign(0.12) TCGA-EE-A29V-06 12 9356430 9356430 C T PZP Silent p.R67R 0.67 TCGA-EE-A29V-06 13 106124916 106124916 G A DAOA Missense_Mutation p.V55I 0.44 tolerated_low_confidence(0.38) benign(0.198) TCGA-EE-A29V-06 13 110838746 110838746 G A COL4A1 Missense_Mutation p.S628F 0.33 benign(0.002) TCGA-EE-A29V-06 13 111303383 111303383 G A CARS2 Missense_Mutation p.S351L 0.35 deleterious(0) possibly_damaging(0.833) TCGA-EE-A29V-06 13 114530088 114530088 C T GAS6 Missense_Mutation p.G453E 0.49 tolerated(0.26) possibly_damaging(0.859) TCGA-EE-A29V-06 13 114530089 114530089 C T GAS6 Missense_Mutation p.G453R 0.49 tolerated(0.15) possibly_damaging(0.902) TCGA-EE-A29V-06 13 19751234 19751234 C T TUBA3C Missense_Mutation p.E297K 0.34 deleterious_low_confidence(0) benign(0.296) TCGA-EE-A29V-06 13 19997240 19997240 G A TPTE2 Missense_Mutation p.P511S 0.53 tolerated(0.21) benign(0.014) TCGA-EE-A29V-06 13 21382643 21382643 G A XPO4 Missense_Mutation p.S524L 0.29 tolerated(0.1) benign(0.001) TCGA-EE-A29V-06 13 23913384 23913384 G A SACS Missense_Mutation p.S1544F 0.27 probably_damaging(0.996) TCGA-EE-A29V-06 13 28578110 28578110 G A FLT3 3'UTR 0.34 TCGA-EE-A29V-06 13 32776495 32776495 C T FRY Silent p.I1283I 0.24 TCGA-EE-A29V-06 13 32841345 32841345 C T FRY Missense_Mutation p.S2662L 0.35 deleterious(0.02) benign(0.382) TCGA-EE-A29V-06 13 36049943 36049943 G A MAB21L1 Silent p.S111S 0.33 TCGA-EE-A29V-06 13 36125086 36125086 C T NBEA Silent p.F2241F 0.21 TCGA-EE-A29V-06 13 36242548 36242548 G A NBEA Missense_Mutation p.G2881E 0.41 deleterious(0) probably_damaging(0.98) TCGA-EE-A29V-06 13 41323282 41323282 T A MRPS31 Missense_Mutation p.N317I 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 13 44433893 44433893 T C CCDC122 Missense_Mutation p.D157G 0.39 tolerated(0.16) benign(0.189) TCGA-EE-A29V-06 13 45594490 45594490 C T GPALPP1 Missense_Mutation p.S244F 0.38 tolerated(0.59) benign(0.003) TCGA-EE-A29V-06 13 53422533 53422533 G A PCDH8 Silent p.F13F 0.34 TCGA-EE-A29V-06 13 73409470 73409470 G C PIBF1 Missense_Mutation p.R396P 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 13 84453655 84453655 G A SLITRK1 Missense_Mutation p.S663F 0.38 deleterious(0) probably_damaging(0.984) TCGA-EE-A29V-06 13 86370229 86370229 C T SLITRK6 Missense_Mutation p.E139K 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29V-06 13 88329680 88329680 C T SLITRK5 Silent p.F679F 0.52 TCGA-EE-A29V-06 13 92101071 92101071 G A GPC5 Missense_Mutation p.E74K 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 14 100182481 100182481 G A CYP46A1 Silent p.E284E 0.54 TCGA-EE-A29V-06 14 101515945 101515945 G A MIR655 RNA 0.53 TCGA-EE-A29V-06 14 103465993 103465993 C A CDC42BPB Nonsense_Mutation p.E169* 0.58 TCGA-EE-A29V-06 14 19378093 19378093 G A OR11H12 Missense_Mutation p.G167E 0.08 deleterious(0) probably_damaging(0.989) TCGA-EE-A29V-06 14 19573136 19573136 G A POTEG Missense_Mutation p.D412N 0.10 deleterious(0.04) possibly_damaging(0.652) TCGA-EE-A29V-06 14 20019959 20019959 C T POTEM Missense_Mutation p.D88N 0.05 tolerated_low_confidence(0.17) probably_damaging(0.972) TCGA-EE-A29V-06 14 20216336 20216336 G A OR4Q3 Silent p.L250L 0.32 TCGA-EE-A29V-06 14 20295941 20295941 G A OR4N2 Missense_Mutation p.G112R 0.37 deleterious(0) benign(0.058) TCGA-EE-A29V-06 14 20388826 20388826 C T OR4K5 Nonsense_Mutation p.Q21* 0.41 TCGA-EE-A29V-06 14 21051976 21051976 G A RNASE11 3'UTR 0.39 TCGA-EE-A29V-06 14 21852211 21852211 C T SUPT16H 5'UTR 0.33 TCGA-EE-A29V-06 14 22102462 22102462 C T OR10G2 Silent p.V179V 0.31 TCGA-EE-A29V-06 14 22337432 22337432 G A TRAV13-1 Missense_Mutation p.E75K 0.39 tolerated(1) benign(0.002) TCGA-EE-A29V-06 14 24841745 24841745 A G NFATC4 Missense_Mutation p.H495R 0.21 tolerated(0.09) probably_damaging(1) TCGA-EE-A29V-06 14 33014688 33014688 G A AKAP6 Missense_Mutation p.V277I 0.30 deleterious(0.05) benign(0.166) TCGA-EE-A29V-06 14 37149766 37149766 C T SLC25A21 3'UTR 0.24 TCGA-EE-A29V-06 14 37153057 37153057 G A SLC25A21 Missense_Mutation p.P272S 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 14 51224663 51224663 G A NIN Missense_Mutation p.L1029F 0.59 tolerated(0.8) benign(0.006) TCGA-EE-A29V-06 14 55647412 55647412 G A DLGAP5 Missense_Mutation p.S222F 0.22 deleterious(0) benign(0.379) TCGA-EE-A29V-06 14 59951795 59951795 G A JKAMP Intron 0.39 TCGA-EE-A29V-06 14 59951796 59951796 G A JKAMP Intron 0.39 TCGA-EE-A29V-06 14 60750007 60750007 G T PPM1A Missense_Mutation p.A269S 0.39 tolerated(0.08) possibly_damaging(0.691) TCGA-EE-A29V-06 14 62462984 62462984 T C SYT16 Missense_Mutation p.S83P 0.21 tolerated_low_confidence(0.08) benign(0.001) TCGA-EE-A29V-06 14 63757755 63757755 C T RHOJ 3'UTR 0.29 TCGA-EE-A29V-06 14 65209040 65209040 C T PLEKHG3 Silent p.L879L 0.36 TCGA-EE-A29V-06 14 67664893 67664893 C T FAM71D Silent p.T5T 0.41 TCGA-EE-A29V-06 14 69262458 69262458 C T ZFP36L1 5'Flank 0.50 TCGA-EE-A29V-06 14 71199520 71199520 C T MAP3K9 Missense_Mutation p.E870K 0.59 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29V-06 14 74433631 74433631 T C ENTPD5 Nonstop_Mutation p.*429Wext*22 0.45 TCGA-EE-A29V-06 14 74433632 74433632 C T ENTPD5 Silent p.%3D 0.44 TCGA-EE-A29V-06 14 75201622 75201622 C T FCF1 Missense_Mutation p.P196S 0.56 deleterious(0) probably_damaging(0.948) TCGA-EE-A29V-06 14 76149932 76149932 G A TTLL5 Missense_Mutation p.G102R 0.53 deleterious(0) possibly_damaging(0.678) TCGA-EE-A29V-06 14 76156614 76156614 C T TTLL5 Missense_Mutation p.H151Y 0.38 deleterious(0.01) possibly_damaging(0.533) TCGA-EE-A29V-06 14 76245981 76245981 C T TTLL5 Silent p.F817F 0.39 TCGA-EE-A29V-06 14 77893965 77893965 C T VIPAS39 Silent p.K492K 0.56 TCGA-EE-A29V-06 14 78397985 78397985 C T ADCK1 Missense_Mutation p.A444V 0.50 tolerated(0.18) benign(0.031) TCGA-EE-A29V-06 15 101814870 101814870 C T VIMP Missense_Mutation p.R112K 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 15 22369004 22369004 C T OR4M2 Silent p.I143I 0.23 TCGA-EE-A29V-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.23 deleterious(0) probably_damaging(0.931) TCGA-EE-A29V-06 15 23311732 23311732 G A HERC2P2 RNA 0.24 TCGA-EE-A29V-06 15 24921244 24921244 C T NPAP1 Missense_Mutation p.A77V 0.36 tolerated(0.22) possibly_damaging(0.682) TCGA-EE-A29V-06 15 25430721 25430721 G T SNORD115-10 5'Flank 0.42 TCGA-EE-A29V-06 15 25438355 25438355 C T SNORD115-11 3'Flank 0.19 TCGA-EE-A29V-06 15 28538093 28538093 G A HERC2 Missense_Mutation p.P88L 0.30 benign(0.001) TCGA-EE-A29V-06 15 33831581 33831581 C T RYR3 Missense_Mutation p.A155V 0.57 possibly_damaging(0.758) TCGA-EE-A29V-06 15 33842363 33842363 G A RYR3 Nonsense_Mutation p.W273* 0.32 TCGA-EE-A29V-06 15 34030784 34030784 C T RYR3 Missense_Mutation p.S2550F 0.30 probably_damaging(0.929) TCGA-EE-A29V-06 15 35087030 35087030 T C ACTC1 Intron 0.40 TCGA-EE-A29V-06 15 40901050 40901050 C T CASC5 Silent p.S47S 0.19 TCGA-EE-A29V-06 15 41192210 41192210 C T VPS18 Silent p.V398V 0.24 TCGA-EE-A29V-06 15 41817327 41817327 C G RPAP1 Missense_Mutation p.R646P 0.40 deleterious(0.01) possibly_damaging(0.604) TCGA-EE-A29V-06 15 42059094 42059094 C T MGA Silent p.L2938L 0.30 TCGA-EE-A29V-06 15 42363990 42363990 G A PLA2G4D Missense_Mutation p.R519W 0.30 deleterious(0) probably_damaging(0.923) TCGA-EE-A29V-06 15 42363991 42363991 G A PLA2G4D Silent p.P518P 0.30 TCGA-EE-A29V-06 15 42458375 42458375 G A VPS39 Silent p.F554F 0.35 TCGA-EE-A29V-06 15 42565657 42565657 C T GANC 5'Flank 0.41 TCGA-EE-A29V-06 15 43367225 43367225 G A UBR1 Silent p.G160G 0.34 TCGA-EE-A29V-06 15 43478431 43478431 G A CCNDBP1 Silent p.Q83Q 0.50 TCGA-EE-A29V-06 15 43478432 43478432 G A CCNDBP1 Splice_Site p.X83_splice 0.50 TCGA-EE-A29V-06 15 43720298 43720298 G A TP53BP1 Silent p.I1248I 0.32 TCGA-EE-A29V-06 15 43817125 43817130 TCCCTC - MAP1A In_Frame_Del p.L1153_S1154del 0.27 TCGA-EE-A29V-06 15 43827034 43827034 G A PPIP5K1 Silent p.I1380I 0.34 TCGA-EE-A29V-06 15 44581414 44581414 C T CASC4 Silent p.L63L 0.30 TCGA-EE-A29V-06 15 51993421 51993421 G A SCG3 Missense_Mutation p.G396E 0.25 tolerated_low_confidence(0.2) possibly_damaging(0.588) TCGA-EE-A29V-06 15 53809787 53809787 G A WDR72 3'UTR 0.56 TCGA-EE-A29V-06 15 57838369 57838369 G A CGNL1 Silent p.E1235E 0.60 TCGA-EE-A29V-06 15 60758807 60758807 G A NARG2 Missense_Mutation p.R172C 0.35 tolerated(0.19) benign(0.004) TCGA-EE-A29V-06 15 62942303 62942303 C T TLN2 Missense_Mutation p.L53F 0.27 deleterious(0.05) possibly_damaging(0.818) TCGA-EE-A29V-06 15 65110166 65110166 C T PIF1 Silent p.A551A 0.31 TCGA-EE-A29V-06 15 65862521 65862521 G A PTPLAD1 Nonsense_Mutation p.W251* 0.30 TCGA-EE-A29V-06 15 66811271 66811271 G A ZWILCH Silent p.K125K 0.21 TCGA-EE-A29V-06 15 67664852 67664852 G A IQCH Missense_Mutation p.R386K 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29V-06 15 68504096 68504096 G A CLN6 Missense_Mutation p.H135Y 0.33 deleterious(0) benign(0.306) TCGA-EE-A29V-06 15 72699092 72699092 G A TMEM202 Missense_Mutation p.A163T 0.28 deleterious(0.01) possibly_damaging(0.808) TCGA-EE-A29V-06 15 73996205 73996205 C T CD276 Silent p.L313L 0.28 TCGA-EE-A29V-06 15 75500451 75500451 C T C15orf39 Missense_Mutation p.P688S 0.20 deleterious(0.04) unknown(0) TCGA-EE-A29V-06 15 78316504 78316504 C T TBC1D2B Silent p.R488R 0.32 TCGA-EE-A29V-06 15 78567844 78567844 G A DNAJA4 Missense_Mutation p.M246I 0.45 deleterious(0) possibly_damaging(0.901) TCGA-EE-A29V-06 15 78923470 78923470 G A CHRNB4 Silent p.L103L 0.28 TCGA-EE-A29V-06 15 78923471 78923471 G A CHRNB4 Silent p.I102I 0.28 TCGA-EE-A29V-06 15 80263401 80263401 G T BCL2A1 Missense_Mutation p.L21I 0.21 deleterious(0.02) possibly_damaging(0.742) TCGA-EE-A29V-06 15 80263402 80263402 G A BCL2A1 Silent p.V20V 0.21 TCGA-EE-A29V-06 15 81171205 81171205 G A KIAA1199 Missense_Mutation p.G80R 0.29 deleterious(0.02) probably_damaging(1) TCGA-EE-A29V-06 15 81171206 81171206 G A KIAA1199 Missense_Mutation p.G80E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 15 88423632 88423632 G A NTRK3 Missense_Mutation p.R735C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 15 88524547 88524547 C T NTRK3 Intron 0.21 TCGA-EE-A29V-06 15 89155069 89155069 G A MIR7-2 RNA 0.42 TCGA-EE-A29V-06 15 89422478 89422478 G A HAPLN3 Silent p.S172S 0.37 TCGA-EE-A29V-06 15 90213326 90213326 C T PLIN1 Silent p.A161A 0.48 TCGA-EE-A29V-06 15 90246397 90246397 T C WDR93 Intron 0.37 TCGA-EE-A29V-06 15 90321454 90321454 C T MESP2 Silent p.A361A 0.52 TCGA-EE-A29V-06 15 93543789 93543789 G T CHD2 Silent p.V1352V 0.39 TCGA-EE-A29V-06 15 98512492 98512492 A G ARRDC4 Silent p.R255R 0.37 TCGA-EE-A29V-06 16 11931870 11931870 G A RSL1D1 Missense_Mutation p.P416L 0.34 tolerated(0.06) possibly_damaging(0.856) TCGA-EE-A29V-06 16 14294221 14294221 A G MKL2 Intron 0.36 TCGA-EE-A29V-06 16 1505732 1505732 G A CLCN7 Silent p.I327I 0.27 TCGA-EE-A29V-06 16 1537417 1537417 C T PTX4 Silent p.G227G 0.36 TCGA-EE-A29V-06 16 1537418 1537418 C T PTX4 Missense_Mutation p.G227E 0.38 tolerated(0.24) benign(0.013) TCGA-EE-A29V-06 16 1961971 1961971 C T HS3ST6 Missense_Mutation p.D186N 0.25 tolerated(0.33) benign(0.382) TCGA-EE-A29V-06 16 20376851 20376851 G A PDILT Silent p.S376S 0.29 TCGA-EE-A29V-06 16 20548594 20548594 C T ACSM2B Missense_Mutation p.A574T 0.33 tolerated(0.16) benign(0.012) TCGA-EE-A29V-06 16 20702490 20702490 G A ACSM1 Silent p.F7F 0.31 TCGA-EE-A29V-06 16 21031009 21031009 C T DNAH3 Missense_Mutation p.D1987N 0.29 tolerated(0.66) benign(0) TCGA-EE-A29V-06 16 21042461 21042461 G A DNAH3 Missense_Mutation p.S1782L 0.33 deleterious(0) benign(0.033) TCGA-EE-A29V-06 16 2125886 2125886 C T TSC2 Missense_Mutation p.P878S 0.47 deleterious(0.04) benign(0.326) TCGA-EE-A29V-06 16 2125887 2125887 C T TSC2 Missense_Mutation p.P878L 0.47 deleterious(0) possibly_damaging(0.565) TCGA-EE-A29V-06 16 22926633 22926633 T G HS3ST2 Missense_Mutation p.M285R 0.20 deleterious(0) possibly_damaging(0.905) TCGA-EE-A29V-06 16 24580361 24580361 C T RBBP6 Missense_Mutation p.R784C 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A29V-06 16 27231785 27231785 C T KDM8 Silent p.H393H 0.36 TCGA-EE-A29V-06 16 2811958 2811958 C T SRRM2 Missense_Mutation p.P477S 0.19 unknown(0) TCGA-EE-A29V-06 16 28880699 28880699 C T SH2B1 Missense_Mutation p.S435L 0.52 deleterious(0.01) benign(0.121) TCGA-EE-A29V-06 16 29708519 29708519 G A QPRT Splice_Site p.X228_splice 0.42 TCGA-EE-A29V-06 16 30040777 30040777 G A FAM57B Missense_Mutation p.S62F 0.45 deleterious(0) probably_damaging(0.988) TCGA-EE-A29V-06 16 30387967 30387967 G A MYLPF Missense_Mutation p.G102R 0.32 deleterious(0) benign(0.27) TCGA-EE-A29V-06 16 30455791 30455791 G A SEPHS2 Missense_Mutation p.P420S 0.49 probably_damaging(0.943) TCGA-EE-A29V-06 16 30740727 30740727 C T SRCAP Silent p.P1987P 0.49 TCGA-EE-A29V-06 16 30976009 30976009 G T SETD1A Missense_Mutation p.A316S 0.33 benign(0.005) TCGA-EE-A29V-06 16 31497553 31497553 C T SLC5A2 Silent p.S177S 0.44 TCGA-EE-A29V-06 16 31501826 31501826 G A SLC5A2 Silent p.V663V 0.26 TCGA-EE-A29V-06 16 3254873 3254873 C T OR1F1 Silent p.T209T 0.37 TCGA-EE-A29V-06 16 3304686 3304686 C T MEFV Missense_Mutation p.E128K 0.40 tolerated(0.2) benign(0.04) TCGA-EE-A29V-06 16 3641088 3641088 T C SLX4 Missense_Mutation p.M851V 0.36 deleterious(0) probably_damaging(0.986) TCGA-EE-A29V-06 16 55857493 55857493 G A CES1 Nonsense_Mutation p.Q170* 0.14 TCGA-EE-A29V-06 16 56976092 56976092 C T HERPUD1 Silent p.F318F 0.35 TCGA-EE-A29V-06 16 57416935 57416935 G A CX3CL1 Silent p.V395V 0.28 TCGA-EE-A29V-06 16 66945820 66945820 G A CDH16 Missense_Mutation p.P591L 0.33 deleterious(0) possibly_damaging(0.796) TCGA-EE-A29V-06 16 67298344 67298344 G A SLC9A5 Silent p.R644R 0.31 TCGA-EE-A29V-06 16 67650756 67650756 C T CTCF Missense_Mutation p.S354F 0.34 deleterious(0) benign(0.04) TCGA-EE-A29V-06 16 67865213 67865213 C T CENPT Silent p.Q203Q 0.27 TCGA-EE-A29V-06 16 67980933 67980933 G A SLC12A4 Silent p.S718S 0.32 TCGA-EE-A29V-06 16 708548 708548 C T WDR90 Silent p.P930P 0.36 TCGA-EE-A29V-06 16 71509998 71509998 A G ZNF19 Missense_Mutation p.V151A 0.41 tolerated(0.57) benign(0.001) TCGA-EE-A29V-06 16 71610304 71610304 C T TAT Missense_Mutation p.M5I 0.29 tolerated_low_confidence(0.17) benign(0.007) TCGA-EE-A29V-06 16 71683204 71683204 C T PHLPP2 Silent p.E1187E 0.35 TCGA-EE-A29V-06 16 71748719 71748719 G A PHLPP2 Intron 0.38 TCGA-EE-A29V-06 16 72110725 72110725 G A HPR Silent p.K264K 0.15 TCGA-EE-A29V-06 16 72174409 72174409 C T PMFBP1 Missense_Mutation p.E237K 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A29V-06 16 74376074 74376074 G A RP11-252A24.2 RNA 0.52 TCGA-EE-A29V-06 16 76569583 76569583 G A CNTNAP4 Missense_Mutation p.G893E 0.19 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A29V-06 16 77401410 77401410 A T ADAMTS18 Missense_Mutation p.S236T 0.22 tolerated(0.6) benign(0.002) TCGA-EE-A29V-06 16 80638416 80638416 G - CDYL2 Frame_Shift_Del p.R464Gfs*4 0.24 TCGA-EE-A29V-06 16 84129405 84129405 G A MBTPS1 Missense_Mutation p.P143S 0.24 tolerated(0.69) benign(0) TCGA-EE-A29V-06 16 84224749 84224749 C T ADAD2 5'UTR 0.34 TCGA-EE-A29V-06 16 84270723 84270723 G A KCNG4 Silent p.I123I 0.22 TCGA-EE-A29V-06 16 84456094 84456094 C T ATP2C2 Silent p.T241T 0.31 TCGA-EE-A29V-06 16 88599317 88599317 G A ZFPM1 Missense_Mutation p.G388E 0.28 deleterious(0) probably_damaging(0.917) TCGA-EE-A29V-06 16 8870231 8870231 G A ABAT Missense_Mutation p.D385N 0.48 deleterious(0) probably_damaging(0.967) TCGA-EE-A29V-06 16 89345503 89345503 G A ANKRD11 Missense_Mutation p.L2483F 0.29 possibly_damaging(0.901) TCGA-EE-A29V-06 16 89712397 89712397 G A CHMP1A 3'UTR 0.38 TCGA-EE-A29V-06 16 89815171 89815171 G A FANCA Missense_Mutation p.L1082F 0.25 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A29V-06 16 90162491 90162491 C T TUBB8P7 RNA 0.16 TCGA-EE-A29V-06 17 10309360 10309360 C T MYH8 Silent p.R810R 0.52 TCGA-EE-A29V-06 17 16342971 16342971 A G TRPV2 3'Flank 0.47 TCGA-EE-A29V-06 17 18143971 18143971 A G LLGL1 Silent p.A762A 0.45 TCGA-EE-A29V-06 17 18907103 18907103 C T FAM83G Silent p.T84T 0.60 TCGA-EE-A29V-06 17 19237303 19237303 C T EPN2 Silent p.F554F 0.47 TCGA-EE-A29V-06 17 19285703 19285703 C T MAPK7 Missense_Mutation p.A696V 0.59 tolerated(0.23) unknown(0) TCGA-EE-A29V-06 17 19689306 19689306 T A ULK2 Missense_Mutation p.H732L 0.47 tolerated(0.32) benign(0.017) TCGA-EE-A29V-06 17 21207854 21207854 C T MAP2K3 Missense_Mutation p.P229S 0.18 deleterious(0) probably_damaging(0.982) TCGA-EE-A29V-06 17 27010010 27010010 C T SUPT6H Missense_Mutation p.A593V 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A29V-06 17 27010011 27010011 C T SUPT6H Silent p.A593A 0.33 TCGA-EE-A29V-06 17 27182104 27182104 G A ERAL1 Missense_Mutation p.V18I 0.54 tolerated_low_confidence(0.12) benign(0.003) TCGA-EE-A29V-06 17 29559101 29559101 C T NF1 Nonsense_Mutation p.Q1070* 0.40 TCGA-EE-A29V-06 17 3300968 3300968 G A OR1E1 Missense_Mutation p.S246F 0.53 deleterious(0.04) benign(0.25) TCGA-EE-A29V-06 17 34266445 34266445 G A LYZL6 5'UTR 0.54 TCGA-EE-A29V-06 17 37607403 37607403 G A MED1 5'UTR 0.62 TCGA-EE-A29V-06 17 39766713 39766713 C A KRT16 Nonsense_Mutation p.E384* 0.67 TCGA-EE-A29V-06 17 40315253 40315253 G A KCNH4 Silent p.P859P 0.59 TCGA-EE-A29V-06 17 40690485 40690485 C T NAGLU Silent p.I220I 0.29 TCGA-EE-A29V-06 17 42170121 42170121 G A HDAC5 Missense_Mutation p.P233L 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A29V-06 17 42756198 42756198 G A CCDC43 3'UTR 0.57 TCGA-EE-A29V-06 17 46128819 46128819 C T NFE2L1 Silent p.V113V 0.23 TCGA-EE-A29V-06 17 46620505 46620505 G A HOXB2 Silent p.S332S 0.30 TCGA-EE-A29V-06 17 47123661 47123661 G A IGF2BP1 Missense_Mutation p.V523I 0.40 tolerated(0.17) possibly_damaging(0.891) TCGA-EE-A29V-06 17 4789256 4789256 C T MINK1 Silent p.A230A 0.53 TCGA-EE-A29V-06 17 4842173 4842173 G A SLC25A11 Missense_Mutation p.P116S 0.59 tolerated(0.14) benign(0.014) TCGA-EE-A29V-06 17 48602351 48602351 C T MYCBPAP Silent p.T626T 0.22 TCGA-EE-A29V-06 17 48631746 48631746 C T SPATA20 Missense_Mutation p.R698C 0.32 deleterious(0.01) possibly_damaging(0.827) TCGA-EE-A29V-06 17 48631790 48631790 C T SPATA20 Silent p.A712A 0.21 TCGA-EE-A29V-06 17 48631791 48631791 C T SPATA20 Nonsense_Mutation p.Q713* 0.21 TCGA-EE-A29V-06 17 48701351 48701351 C T CACNA1G Silent p.P2048P 0.62 TCGA-EE-A29V-06 17 48917245 48917245 C T WFIKKN2 Missense_Mutation p.S199F 0.55 tolerated(0.07) benign(0.019) TCGA-EE-A29V-06 17 51901259 51901259 G A KIF2B Missense_Mutation p.E289K 0.52 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A29V-06 17 54428197 54428197 C T ANKFN1 Missense_Mutation p.P90S 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A29V-06 17 56271413 56271413 G A EPX Nonsense_Mutation p.W185* 0.35 TCGA-EE-A29V-06 17 56693650 56693650 G C TEX14 Missense_Mutation p.A224G 0.18 tolerated(1) benign(0) TCGA-EE-A29V-06 17 60779114 60779114 C T MARCH10 Missense_Mutation p.E793K 0.26 deleterious(0) benign(0.146) TCGA-EE-A29V-06 17 61571793 61571793 G A ACE Silent p.G1114G 0.18 TCGA-EE-A29V-06 17 61600840 61600840 C T KCNH6 Silent p.F22F 0.22 TCGA-EE-A29V-06 17 62026854 62026854 G A SCN4A Missense_Mutation p.S963F 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A29V-06 17 62050004 62050004 C T SCN4A Missense_Mutation p.M66I 0.53 tolerated(0.31) benign(0.001) TCGA-EE-A29V-06 17 62050038 62050038 C T SCN4A Missense_Mutation p.R55Q 0.50 tolerated(1) benign(0.001) TCGA-EE-A29V-06 17 65972017 65972017 G T BPTF Missense_Mutation p.C2890F 0.49 probably_damaging(0.998) TCGA-EE-A29V-06 17 66303621 66303621 C T ARSG 5'UTR 0.48 TCGA-EE-A29V-06 17 66871529 66871529 G A ABCA8 Silent p.S1461S 0.21 TCGA-EE-A29V-06 17 66925719 66925719 G A ABCA8 Silent p.L308L 0.25 TCGA-EE-A29V-06 17 67212047 67212047 C T ABCA10 Missense_Mutation p.G256E 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 17 71431638 71431638 G A SDK2 Silent p.A382A 0.42 TCGA-EE-A29V-06 17 7193843 7193843 G A YBX2 Silent p.A157A 0.50 TCGA-EE-A29V-06 17 73015830 73015830 C T ICT1 Missense_Mutation p.P87S 0.53 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 17 73015831 73015831 C T ICT1 Missense_Mutation p.P87L 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 17 73201842 73201842 C G NUP85 5'UTR 0.22 TCGA-EE-A29V-06 17 73839597 73839597 G A UNC13D Nonsense_Mutation p.Q41* 0.37 TCGA-EE-A29V-06 17 73839598 73839598 G A UNC13D Silent p.I40I 0.39 TCGA-EE-A29V-06 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.68 TCGA-EE-A29V-06 17 78195515 78195515 C T SLC26A11 Silent p.F52F 0.45 TCGA-EE-A29V-06 17 78321753 78321753 C T RNF213 Silent p.F3206F 0.38 TCGA-EE-A29V-06 17 78919516 78919516 C T RPTOR Silent p.V1025V 0.77 TCGA-EE-A29V-06 17 80788671 80788671 C T ZNF750 Missense_Mutation p.D507N 0.34 tolerated(0.14) possibly_damaging(0.897) TCGA-EE-A29V-06 17 8455375 8455375 T A MYH10 Missense_Mutation p.E303V 0.78 probably_damaging(0.998) TCGA-EE-A29V-06 17 9583588 9583588 C T USP43 Missense_Mutation p.S337F 0.60 deleterious(0) possibly_damaging(0.833) TCGA-EE-A29V-06 18 28659828 28659828 G A DSC2 Missense_Mutation p.L550F 0.25 tolerated(0.07) probably_damaging(0.931) TCGA-EE-A29V-06 18 29101149 29101149 G A DSG2 Missense_Mutation p.E156K 0.50 tolerated(0.34) benign(0.074) TCGA-EE-A29V-06 18 3102527 3102527 C T MYOM1 Missense_Mutation p.D1174N 0.34 tolerated(1) benign(0.012) TCGA-EE-A29V-06 18 31673492 31673492 C T NOL4 Missense_Mutation p.D237N 0.61 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A29V-06 18 3729134 3729134 C T DLGAP1 Splice_Site p.X531_splice 0.38 TCGA-EE-A29V-06 18 3879294 3879294 A C DLGAP1 Missense_Mutation p.C259G 0.27 deleterious(0.02) possibly_damaging(0.719) TCGA-EE-A29V-06 18 47527636 47527636 G A MYO5B Missense_Mutation p.P201S 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A29V-06 18 56063468 56063468 G A NEDD4L Silent p.V965V 0.50 TCGA-EE-A29V-06 18 56184389 56184389 T C ALPK2 Silent p.Q1897Q 0.67 TCGA-EE-A29V-06 18 59166487 59166487 C T CDH20 Silent p.I105I 0.47 TCGA-EE-A29V-06 18 70502539 70502539 G A NETO1 Intron 0.41 TCGA-EE-A29V-06 18 7231230 7231230 G A LRRC30 Missense_Mutation p.D32N 0.38 deleterious(0.01) possibly_damaging(0.808) TCGA-EE-A29V-06 18 72346877 72346877 C T ZNF407 Missense_Mutation p.P1301L 0.25 deleterious(0) benign(0.231) TCGA-EE-A29V-06 18 72914262 72914262 A T ZADH2 Nonsense_Mutation p.Y81* 0.52 TCGA-EE-A29V-06 19 10084245 10084245 C T COL5A3 Splice_Site p.X1222_splice 0.40 TCGA-EE-A29V-06 19 10129494 10129494 G A RDH8 Missense_Mutation p.G137E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 19 1127741 1127741 G A SBNO2 Silent p.F101F 0.68 TCGA-EE-A29V-06 19 1220485 1220485 C T STK11 Missense_Mutation p.S193F 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 19 12691411 12691411 T C ZNF490 Missense_Mutation p.K493R 0.30 tolerated(0.08) benign(0.191) TCGA-EE-A29V-06 19 1278890 1278890 G A C19orf24 3'UTR 0.54 TCGA-EE-A29V-06 19 1278891 1278891 G A C19orf24 3'UTR 0.54 TCGA-EE-A29V-06 19 12958462 12958462 C T MAST1 Silent p.I175I 0.36 TCGA-EE-A29V-06 19 13888974 13888974 G A C19orf53 Missense_Mutation p.G88R 0.24 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A29V-06 19 14077230 14077230 C G RFX1 Intron 0.18 TCGA-EE-A29V-06 19 14591154 14591154 G A GIPC1 Silent p.T206T 0.22 TCGA-EE-A29V-06 19 1465626 1465626 G A APC2 Missense_Mutation p.G776S 0.50 possibly_damaging(0.764) TCGA-EE-A29V-06 19 15273333 15273333 C T NOTCH3 Silent p.V1952V 0.20 TCGA-EE-A29V-06 19 15302455 15302455 C T NOTCH3 Silent p.T272T 0.47 TCGA-EE-A29V-06 19 15558987 15558987 G A WIZ Silent p.F44F 0.54 TCGA-EE-A29V-06 19 15852473 15852473 C T OR10H3 Missense_Mutation p.R91C 0.21 deleterious(0.02) benign(0.005) TCGA-EE-A29V-06 19 15918182 15918182 G A OR10H1 Silent p.I222I 0.44 TCGA-EE-A29V-06 19 16032847 16032847 C T CYP4F11 Nonsense_Mutation p.W372* 0.19 TCGA-EE-A29V-06 19 16918482 16918482 C T NWD1 Silent p.L1274L 0.57 TCGA-EE-A29V-06 19 17025574 17025574 A G CPAMD8 Missense_Mutation p.F1274L 0.17 tolerated(0.12) possibly_damaging(0.805) TCGA-EE-A29V-06 19 17783268 17783268 C T UNC13A Silent p.E63E 0.60 TCGA-EE-A29V-06 19 18004596 18004596 C T SLC5A5 Silent p.F614F 0.78 TCGA-EE-A29V-06 19 18556038 18556038 T C ELL Missense_Mutation p.K582R 0.57 deleterious(0.03) benign(0.215) TCGA-EE-A29V-06 19 19822381 19822381 G A ZNF14 Missense_Mutation p.S570F 0.47 tolerated(0.68) possibly_damaging(0.769) TCGA-EE-A29V-06 19 22362994 22362994 C T ZNF676 Missense_Mutation p.E509K 0.44 tolerated(0.07) possibly_damaging(0.622) TCGA-EE-A29V-06 19 22363473 22363473 G A ZNF676 Missense_Mutation p.S349F 0.37 tolerated(0.28) benign(0.001) TCGA-EE-A29V-06 19 22941130 22941130 A T ZNF99 Missense_Mutation p.H527Q 0.53 deleterious(0.01) benign(0.059) TCGA-EE-A29V-06 19 2987014 2987014 C T TLE6 Missense_Mutation p.P107S 0.60 tolerated(0.05) benign(0.02) TCGA-EE-A29V-06 19 2987015 2987015 C T TLE6 Missense_Mutation p.P107L 0.56 deleterious(0) benign(0.02) TCGA-EE-A29V-06 19 31039620 31039620 G A ZNF536 Missense_Mutation p.D1032N 0.51 tolerated(0.06) benign(0.379) TCGA-EE-A29V-06 19 31767601 31767601 G A TSHZ3 Missense_Mutation p.P1033L 0.16 tolerated(0.14) benign(0.184) TCGA-EE-A29V-06 19 33130265 33130265 G A ANKRD27 Silent p.P371P 0.27 TCGA-EE-A29V-06 19 34687573 34687573 C T LSM14A Missense_Mutation p.S107F 0.29 tolerated(0.16) possibly_damaging(0.866) TCGA-EE-A29V-06 19 34832632 34832632 C T KIAA0355 Missense_Mutation p.P598L 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A29V-06 19 35449162 35449162 G A ZNF792 Missense_Mutation p.P533S 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29V-06 19 35449497 35449497 G A ZNF792 Missense_Mutation p.P421L 0.23 deleterious(0) probably_damaging(0.988) TCGA-EE-A29V-06 19 35449498 35449498 G A ZNF792 Missense_Mutation p.P421S 0.24 tolerated(0.07) possibly_damaging(0.48) TCGA-EE-A29V-06 19 35829139 35829139 C T CD22 Missense_Mutation p.L352F 0.39 tolerated(0.13) possibly_damaging(0.666) TCGA-EE-A29V-06 19 35849842 35849842 T C FFAR3 Missense_Mutation p.V17A 0.21 tolerated(0.37) benign(0.001) TCGA-EE-A29V-06 19 36029566 36029566 G A GAPDHS Missense_Mutation p.E144K 0.39 tolerated_low_confidence(0.54) possibly_damaging(0.539) TCGA-EE-A29V-06 19 36351226 36351226 C T KIRREL2 Missense_Mutation p.S234L 0.56 deleterious(0) benign(0.013) TCGA-EE-A29V-06 19 37676996 37676996 G A ZNF585B Silent p.L481L 0.31 TCGA-EE-A29V-06 19 38990623 38990623 C T RYR1 Silent p.I2430I 0.35 TCGA-EE-A29V-06 19 39023320 39023320 C T RYR1 Silent p.L3735L 0.18 TCGA-EE-A29V-06 19 39913434 39913434 C T PLEKHG2 Silent p.T580T 0.33 TCGA-EE-A29V-06 19 40424301 40424301 C T FCGBP Silent p.V634V 0.38 TCGA-EE-A29V-06 19 422286 422286 G A SHC2 Missense_Mutation p.R494C 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 19 42482796 42482796 G A ATP1A3 Missense_Mutation p.A544V 0.37 deleterious(0.03) possibly_damaging(0.662) TCGA-EE-A29V-06 19 44030253 44030253 C T ETHE1 Intron 0.62 TCGA-EE-A29V-06 19 44377618 44377618 C T ZNF404 Missense_Mutation p.E250K 0.35 tolerated(1) benign(0.147) TCGA-EE-A29V-06 19 44471349 44471349 G A ZNF221 Silent p.K565K 0.34 TCGA-EE-A29V-06 19 44777201 44777201 A C ZNF233 Silent p.R130R 0.33 TCGA-EE-A29V-06 19 44983505 44983505 G A ZNF180 Missense_Mutation p.S110F 0.29 deleterious(0.01) benign(0.046) TCGA-EE-A29V-06 19 45494515 45494515 C T CLPTM1 Missense_Mutation p.S480F 0.41 deleterious(0) probably_damaging(0.981) TCGA-EE-A29V-06 19 45774924 45774924 C T MARK4 Silent p.T248T 0.27 TCGA-EE-A29V-06 19 45996558 45996558 G A RTN2 Missense_Mutation p.P298L 0.38 deleterious_low_confidence(0.02) benign(0) TCGA-EE-A29V-06 19 46027396 46027396 C T VASP Missense_Mutation p.P318S 0.35 tolerated(0.99) probably_damaging(0.987) TCGA-EE-A29V-06 19 46511477 46511477 G A CCDC61 Missense_Mutation p.E157K 0.37 tolerated(0.07) possibly_damaging(0.561) TCGA-EE-A29V-06 19 47570287 47570287 G A ZC3H4 Missense_Mutation p.P1080S 0.40 unknown(0) TCGA-EE-A29V-06 19 47570288 47570288 G A ZC3H4 Silent p.D1079D 0.38 TCGA-EE-A29V-06 19 47597674 47597674 G A ZC3H4 Missense_Mutation p.S118L 0.33 possibly_damaging(0.637) TCGA-EE-A29V-06 19 47773841 47773841 C T CCDC9 Silent p.P327P 0.25 TCGA-EE-A29V-06 19 47844877 47844877 C T C5AR2 Missense_Mutation p.P274L 0.27 deleterious(0) probably_damaging(0.979) TCGA-EE-A29V-06 19 47969428 47969428 G A SLC8A2 Missense_Mutation p.A78V 0.33 tolerated(0.14) benign(0.298) TCGA-EE-A29V-06 19 47996811 47996811 G A NAPA Intron 0.50 TCGA-EE-A29V-06 19 4817290 4817290 G A TICAM1 Missense_Mutation p.P367L 0.53 tolerated(0.46) benign(0.019) TCGA-EE-A29V-06 19 48386976 48386976 G A SULT2A1 Missense_Mutation p.S68F 0.36 deleterious(0) possibly_damaging(0.717) TCGA-EE-A29V-06 19 49206302 49206302 A T FUT2 Missense_Mutation p.Q30L 0.28 tolerated_low_confidence(0.14) benign(0.073) TCGA-EE-A29V-06 19 49473059 49473059 G A GYS1 Silent p.F621F 0.37 TCGA-EE-A29V-06 19 49671637 49671637 C T TRPM4 Missense_Mutation p.P190L 0.28 deleterious(0.01) benign(0.414) TCGA-EE-A29V-06 19 49703939 49703939 G A TRPM4 Silent p.G950G 0.25 TCGA-EE-A29V-06 19 50150025 50150025 C T SCAF1 Missense_Mutation p.P139L 0.64 unknown(0) TCGA-EE-A29V-06 19 50150026 50150026 C T SCAF1 Silent p.P139P 0.60 TCGA-EE-A29V-06 19 50156133 50156133 G A SCAF1 Silent p.R829R 0.36 TCGA-EE-A29V-06 19 50169132 50169132 C T BCL2L12 Missense_Mutation p.R18W 0.35 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A29V-06 19 50189873 50189873 C T PRMT1 Missense_Mutation p.P308S 0.23 tolerated(0.09) benign(0.156) TCGA-EE-A29V-06 19 51297146 51297146 G A ACPT Silent p.G260G 0.37 TCGA-EE-A29V-06 19 51512788 51512788 G A KLK9 Missense_Mutation p.L6F 0.48 tolerated(0.25) unknown(0) TCGA-EE-A29V-06 19 52033135 52033135 G A SIGLEC6 Silent p.S285S 0.40 TCGA-EE-A29V-06 19 52149079 52149079 C T SIGLEC14 Missense_Mutation p.G219E 0.53 deleterious(0.02) benign(0.38) TCGA-EE-A29V-06 19 52327119 52327119 G A FPR3 Missense_Mutation p.G40R 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A29V-06 19 53087062 53087062 A C ZNF701 3'UTR 0.55 TCGA-EE-A29V-06 19 53209551 53209551 G A ZNF611 Missense_Mutation p.H253Y 0.14 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A29V-06 19 53270581 53270581 G A ZNF600 Missense_Mutation p.S143F 0.30 tolerated(1) benign(0.001) TCGA-EE-A29V-06 19 53619642 53619642 C T ZNF415 Nonsense_Mutation p.W20* 0.23 TCGA-EE-A29V-06 19 53884421 53884421 C T ZNF525 Silent p.L197L 0.30 TCGA-EE-A29V-06 19 54080487 54080487 C T ZNF331 Missense_Mutation p.R225W 0.35 tolerated(0.16) probably_damaging(0.983) TCGA-EE-A29V-06 19 54675684 54675684 G A TMC4 Missense_Mutation p.P89L 0.25 tolerated(0.11) benign(0.221) TCGA-EE-A29V-06 19 55045166 55045166 G A KIR3DX1 Missense_Mutation p.G96R 0.50 deleterious(0.03) possibly_damaging(0.541) TCGA-EE-A29V-06 19 55087361 55087361 G T LILRA2 Missense_Mutation p.R347L 0.46 tolerated(0.31) benign(0.255) TCGA-EE-A29V-06 19 55107160 55107160 G A LILRA1 Missense_Mutation p.E240K 0.27 tolerated(0.2) possibly_damaging(0.752) TCGA-EE-A29V-06 19 55177763 55177763 G A LILRB4 Missense_Mutation p.R316K 0.27 tolerated(1) benign(0) TCGA-EE-A29V-06 19 55441917 55441917 C T NLRP7 Nonsense_Mutation p.W920* 0.31 TCGA-EE-A29V-06 19 55451794 55451794 A T NLRP7 Silent p.S131S 0.35 TCGA-EE-A29V-06 19 56321022 56321022 C T NLRP11 Silent p.R318R 0.35 TCGA-EE-A29V-06 19 56369793 56369793 G A NLRP4 Nonsense_Mutation p.W345* 0.38 TCGA-EE-A29V-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.35 deleterious(0) probably_damaging(0.918) TCGA-EE-A29V-06 19 56473470 56473470 G A NLRP8 Missense_Mutation p.D694N 0.32 deleterious(0.04) possibly_damaging(0.895) TCGA-EE-A29V-06 19 57089815 57089815 G A ZNF470 Missense_Mutation p.G673E 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A29V-06 19 57335922 57335922 G A PEG3 Silent p.I34I 0.34 TCGA-EE-A29V-06 19 57670564 57670564 C T DUXA Missense_Mutation p.G88E 0.38 tolerated(0.3) possibly_damaging(0.663) TCGA-EE-A29V-06 19 58102464 58102464 C T ZIK1 Missense_Mutation p.H429Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A29V-06 19 58189852 58189852 G A ZSCAN4 Missense_Mutation p.G294E 0.28 tolerated(0.14) benign(0.038) TCGA-EE-A29V-06 19 58370775 58370775 C T ZNF587 Missense_Mutation p.S332F 0.35 tolerated(0.1) probably_damaging(0.963) TCGA-EE-A29V-06 19 6665026 6665026 C T TNFSF14 Missense_Mutation p.G212R 0.43 deleterious(0.03) probably_damaging(0.961) TCGA-EE-A29V-06 19 6926573 6926573 C T EMR1 Missense_Mutation p.S728F 0.58 deleterious(0) probably_damaging(0.983) TCGA-EE-A29V-06 19 7805875 7805875 G T CD209 3'UTR 0.59 TCGA-EE-A29V-06 19 7911451 7911451 C T EVI5L Missense_Mutation p.P8L 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 19 8175966 8175966 T G FBN3 Missense_Mutation p.T1396P 0.42 tolerated(0.07) probably_damaging(0.953) TCGA-EE-A29V-06 19 8553564 8553564 C T HNRNPM Intron 0.34 TCGA-EE-A29V-06 19 8654159 8654159 C T ADAMTS10 Missense_Mutation p.E709K 0.45 tolerated(0.23) possibly_damaging(0.864) TCGA-EE-A29V-06 19 8665924 8665924 C T ADAMTS10 Missense_Mutation p.R233Q 0.34 deleterious(0) benign(0.302) TCGA-EE-A29V-06 19 8953375 8953375 G A MBD3L1 Silent p.R7R 0.29 TCGA-EE-A29V-06 19 9048354 9048354 C T MUC16 Missense_Mutation p.G11093R 0.31 benign(0.145) TCGA-EE-A29V-06 19 9061528 9061528 G A MUC16 Missense_Mutation p.H8640Y 0.48 unknown(0) TCGA-EE-A29V-06 19 9070177 9070177 C T MUC16 Missense_Mutation p.D5757N 0.39 unknown(0) TCGA-EE-A29V-06 19 9086891 9086891 C T MUC16 Missense_Mutation p.G1642R 0.27 unknown(0) TCGA-EE-A29V-06 19 9090179 9090179 C T MUC16 Missense_Mutation p.E546K 0.35 unknown(0) TCGA-EE-A29V-06 1 101194910 101194910 G A VCAM1 Silent p.L392L 0.28 TCGA-EE-A29V-06 1 102312501 102312501 G A OLFM3 Intron 0.35 TCGA-EE-A29V-06 1 103412448 103412448 C T COL11A1 Missense_Mutation p.G1078E 0.16 unknown(0) TCGA-EE-A29V-06 1 103412449 103412449 C T COL11A1 Missense_Mutation p.G1078R 0.17 unknown(0) TCGA-EE-A29V-06 1 104112965 104112965 C T AMY2B Intron 0.39 TCGA-EE-A29V-06 1 109869750 109869750 G A SORT1 Missense_Mutation p.P503S 0.31 tolerated(0.07) benign(0.167) TCGA-EE-A29V-06 1 110050284 110050284 G A AMIGO1 Silent p.S417S 0.37 TCGA-EE-A29V-06 1 110299788 110299788 C T EPS8L3 Splice_Site p.X325_splice 0.33 TCGA-EE-A29V-06 1 110738249 110738249 G A SLC6A17 Missense_Mutation p.V512I 0.31 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A29V-06 1 111147292 111147292 T C KCNA2 Missense_Mutation p.N38S 0.59 deleterious(0) probably_damaging(0.985) TCGA-EE-A29V-06 1 111854318 111854318 C T CHIA Silent p.V11V 0.31 TCGA-EE-A29V-06 1 11254941 11254941 C T ANGPTL7 Missense_Mutation p.S301F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 1 11254942 11254942 C T ANGPTL7 Silent p.S301S 0.28 TCGA-EE-A29V-06 1 112998569 112998569 C T CTTNBP2NL Missense_Mutation p.S152F 0.26 tolerated(0.07) probably_damaging(0.951) TCGA-EE-A29V-06 1 11300598 11300598 G A MTOR Silent p.A516A 0.29 TCGA-EE-A29V-06 1 11346122 11346122 C T UBIAD1 Silent p.L317L 0.31 TCGA-EE-A29V-06 1 114216003 114216003 C T MAGI3 Silent p.L1035L 0.20 TCGA-EE-A29V-06 1 115258747 115258747 C G NRAS Missense_Mutation p.G12A 0.42 deleterious(0.02) benign(0.267) TCGA-EE-A29V-06 1 118558675 118558675 T A SPAG17 Silent p.G1400G 0.68 TCGA-EE-A29V-06 1 118558676 118558676 C T SPAG17 Missense_Mutation p.G1400E 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 1 119925619 119925619 C T HAO2 Silent p.A71A 0.36 TCGA-EE-A29V-06 1 120337285 120337285 C T REG4 Missense_Mutation p.E145K 0.68 tolerated(0.41) benign(0.153) TCGA-EE-A29V-06 1 12908051 12908051 G A HNRNPCL1 Missense_Mutation p.S31L 0.09 deleterious(0) benign(0.156) TCGA-EE-A29V-06 1 12921316 12921316 C T PRAMEF2 Silent p.I369I 0.36 TCGA-EE-A29V-06 1 12943141 12943141 C T PRAMEF4 Silent p.L25L 0.36 TCGA-EE-A29V-06 1 13448286 13448286 G A PRAMEF13 Silent p.L397L 0.35 TCGA-EE-A29V-06 1 144864142 144864142 C T PDE4DIP Missense_Mutation p.D1985N 0.11 tolerated(1) benign(0.007) TCGA-EE-A29V-06 1 144917539 144917539 C T PDE4DIP Missense_Mutation p.R522K 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 1 145015920 145015920 G A RP11-326G21.1 5'Flank 0.08 TCGA-EE-A29V-06 1 145416753 145416753 A G HFE2 Silent p.L366L 0.40 TCGA-EE-A29V-06 1 149857753 149857753 C T HIST2H2BE 3'UTR 0.50 TCGA-EE-A29V-06 1 149905813 149905813 G A MTMR11 Missense_Mutation p.P236S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 1 150620962 150620962 G A GOLPH3L Silent p.S231S 0.33 TCGA-EE-A29V-06 1 151090593 151090593 C T GABPB2 Missense_Mutation p.T403I 0.49 deleterious_low_confidence(0.01) benign(0.236) TCGA-EE-A29V-06 1 151747916 151747916 C T TDRKH Silent p.G462G 0.29 TCGA-EE-A29V-06 1 151748675 151748675 G A TDRKH Nonsense_Mutation p.R372* 0.37 TCGA-EE-A29V-06 1 151773339 151773339 C T LINGO4 3'UTR 0.33 TCGA-EE-A29V-06 1 152193255 152193255 C T HRNR Missense_Mutation p.G284S 0.31 unknown(0) TCGA-EE-A29V-06 1 152281609 152281609 A G FLG Missense_Mutation p.V1918A 0.31 benign(0.418) TCGA-EE-A29V-06 1 152284875 152284875 G A FLG Silent p.S829S 0.32 TCGA-EE-A29V-06 1 152552009 152552009 C T LCE3D 3'UTR 0.36 TCGA-EE-A29V-06 1 153177279 153177279 G A LELP1 Silent p.Q32Q 0.37 TCGA-EE-A29V-06 1 153906042 153906042 G A DENND4B Missense_Mutation p.P1083S 0.21 tolerated(1) benign(0.001) TCGA-EE-A29V-06 1 154574584 154574584 G A ADAR Silent p.S178S 0.30 TCGA-EE-A29V-06 1 154574585 154574585 G A ADAR Missense_Mutation p.S178F 0.29 tolerated(0.06) benign(0.078) TCGA-EE-A29V-06 1 155166889 155166889 C T THBS3 Missense_Mutation p.R872Q 0.42 deleterious(0.01) benign(0.166) TCGA-EE-A29V-06 1 156446904 156446904 G A MEF2D Missense_Mutation p.P252L 0.50 deleterious(0.01) benign(0.039) TCGA-EE-A29V-06 1 156752096 156752096 C T PRCC Missense_Mutation p.P164L 0.15 deleterious(0) probably_damaging(0.981) TCGA-EE-A29V-06 1 156752097 156752097 C T PRCC Silent p.P164P 0.16 TCGA-EE-A29V-06 1 157512802 157512802 C T FCRL5 Missense_Mutation p.E324K 0.31 tolerated(0.79) benign(0.062) TCGA-EE-A29V-06 1 158299295 158299295 C T CD1B Missense_Mutation p.G251R 0.31 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A29V-06 1 158390228 158390230 TCC GTA OR10K2 Missense_Mutation p.G143Y 0.09 TCGA-EE-A29V-06 1 158577044 158577044 G A OR10Z1 Silent p.Q272Q 0.38 TCGA-EE-A29V-06 1 158612669 158612669 C T SPTA1 Missense_Mutation p.E1514K 0.35 tolerated(0.73) possibly_damaging(0.639) TCGA-EE-A29V-06 1 161047403 161047403 T G PVRL4 Silent p.T190T 0.28 TCGA-EE-A29V-06 1 161495847 161495847 C T HSPA6 Missense_Mutation p.P467S 0.46 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-EE-A29V-06 1 161821621 161821621 C T ATF6 Missense_Mutation p.L477F 0.26 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A29V-06 1 166959060 166959060 G A MAEL Silent p.E73E 0.18 TCGA-EE-A29V-06 1 168211762 168211762 C T SFT2D2 Missense_Mutation p.A156V 0.35 deleterious(0.01) benign(0.09) TCGA-EE-A29V-06 1 169555578 169555578 G A F5 Missense_Mutation p.T16I 0.29 tolerated(0.16) benign(0.081) TCGA-EE-A29V-06 1 169695926 169695926 G A SELE Missense_Mutation p.P556L 0.38 deleterious(0.03) possibly_damaging(0.545) TCGA-EE-A29V-06 1 170941014 170941014 G A MROH9 Silent p.R202R 0.32 TCGA-EE-A29V-06 1 170955851 170955851 G A MROH9 Missense_Mutation p.M293I 0.33 deleterious(0.04) benign(0.381) TCGA-EE-A29V-06 1 170967484 170967484 C T MROH9 Intron 0.40 TCGA-EE-A29V-06 1 173596232 173596232 C T ANKRD45 Missense_Mutation p.G188E 0.22 tolerated(0.11) benign(0.214) TCGA-EE-A29V-06 1 173596233 173596233 C T ANKRD45 Missense_Mutation p.G188R 0.22 tolerated(0.11) benign(0.345) TCGA-EE-A29V-06 1 175106034 175106034 G A TNN Missense_Mutation p.E1169K 0.21 deleterious(0) possibly_damaging(0.886) TCGA-EE-A29V-06 1 17531800 17531800 C T PADI1 Missense_Mutation p.H30Y 0.17 tolerated(1) benign(0.01) TCGA-EE-A29V-06 1 175328855 175328855 G A TNR Missense_Mutation p.P956L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 1 175355369 175355369 G A TNR Missense_Mutation p.P526S 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A29V-06 1 175375790 175375790 G A TNR Missense_Mutation p.L21F 0.27 tolerated_low_confidence(0.2) probably_damaging(0.999) TCGA-EE-A29V-06 1 17597630 17597630 C T PADI3 Missense_Mutation p.T335I 0.53 tolerated(0.15) benign(0.275) TCGA-EE-A29V-06 1 176526076 176526076 G A PAPPA2 Silent p.A206A 0.32 TCGA-EE-A29V-06 1 177226424 177226424 G A BRINP2 Silent p.L191L 0.19 TCGA-EE-A29V-06 1 17752038 17752038 C T RCC2 Nonsense_Mutation p.W174* 0.44 TCGA-EE-A29V-06 1 179815186 179815186 A G TOR1AIP2 3'UTR 0.40 TCGA-EE-A29V-06 1 181741226 181741226 G A CACNA1E Silent p.Q1666Q 0.32 TCGA-EE-A29V-06 1 181767742 181767742 C T CACNA1E Silent p.D2238D 0.33 TCGA-EE-A29V-06 1 182026968 182026968 G A ZNF648 Missense_Mutation p.P60S 0.30 tolerated_low_confidence(0.13) benign(0.025) TCGA-EE-A29V-06 1 186017936 186017936 G A HMCN1 Missense_Mutation p.G2181E 0.26 probably_damaging(1) TCGA-EE-A29V-06 1 186648524 186648524 C T PTGS2 Missense_Mutation p.M33I 0.38 tolerated(0.1) benign(0.015) TCGA-EE-A29V-06 1 190067482 190067482 C T BRINP3 Missense_Mutation p.R656Q 0.34 tolerated(0.18) benign(0.005) TCGA-EE-A29V-06 1 196716296 196716296 G A CFH Nonsense_Mutation p.W1183* 0.40 TCGA-EE-A29V-06 1 196883701 196883701 G A CFHR4 Silent p.L418L 0.42 TCGA-EE-A29V-06 1 197008430 197008430 A C F13B 3'UTR 0.43 TCGA-EE-A29V-06 1 197032154 197032154 C T F13B Missense_Mutation p.G33E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 1 197297627 197297627 C T CRB1 Missense_Mutation p.S49L 0.43 tolerated(0.71) benign(0.005) TCGA-EE-A29V-06 1 197390611 197390611 G A CRB1 Silent p.Q551Q 0.31 TCGA-EE-A29V-06 1 197396999 197396999 C T CRB1 Silent p.F848F 0.31 TCGA-EE-A29V-06 1 197522237 197522237 G A DENND1B Silent p.I385I 0.24 TCGA-EE-A29V-06 1 198266348 198266348 C T NEK7 Missense_Mutation p.P259L 0.34 deleterious(0.03) probably_damaging(0.929) TCGA-EE-A29V-06 1 20066335 20066335 G A TMCO4 Silent p.I387I 0.31 TCGA-EE-A29V-06 1 200817237 200817237 G A CAMSAP2 Missense_Mutation p.G447E 0.30 deleterious(0) probably_damaging(0.962) TCGA-EE-A29V-06 1 200978053 200978053 C T KIF21B Missense_Mutation p.M97I 0.36 deleterious(0) possibly_damaging(0.785) TCGA-EE-A29V-06 1 201010664 201010664 C T CACNA1S Missense_Mutation p.G1701E 0.41 tolerated_low_confidence(0.25) benign(0.001) TCGA-EE-A29V-06 1 201035439 201035439 C T CACNA1S Missense_Mutation p.S888N 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-EE-A29V-06 1 201196201 201196201 G A IGFN1 Missense_Mutation p.V3660M 0.36 benign(0.343) TCGA-EE-A29V-06 1 202914124 202914124 G A ADIPOR1 Missense_Mutation p.R202W 0.33 deleterious(0.05) benign(0.077) TCGA-EE-A29V-06 1 204378971 204378971 G A PPP1R15B Silent p.S523S 0.37 TCGA-EE-A29V-06 1 204378972 204378972 G A PPP1R15B Missense_Mutation p.S523F 0.37 deleterious(0.04) benign(0.389) TCGA-EE-A29V-06 1 20442830 20442830 C T PLA2G2D Missense_Mutation p.D61N 0.40 deleterious(0.01) probably_damaging(1) TCGA-EE-A29V-06 1 204587896 204587896 G A LRRN2 Missense_Mutation p.R409C 0.33 deleterious(0) probably_damaging(0.98) TCGA-EE-A29V-06 1 205589704 205589704 G A ELK4 Missense_Mutation p.S157F 0.40 deleterious(0) possibly_damaging(0.677) TCGA-EE-A29V-06 1 206224448 206224448 C T AVPR1B Missense_Mutation p.S3F 0.33 tolerated(0.16) benign(0.219) TCGA-EE-A29V-06 1 206331217 206331217 G A CTSE 3'UTR 0.38 TCGA-EE-A29V-06 1 206822100 206822100 C T DYRK3 Silent p.H519H 0.38 TCGA-EE-A29V-06 1 207039849 207039849 C T IL20 Silent p.L82L 0.34 TCGA-EE-A29V-06 1 207318012 207318012 G A C4BPA Missense_Mutation p.E582K 0.32 tolerated(0.16) benign(0.226) TCGA-EE-A29V-06 1 207789989 207789989 C T CR1 Missense_Mutation p.P2244L 0.41 deleterious(0.05) benign(0.203) TCGA-EE-A29V-06 1 209788530 209788530 G A LAMB3 3'UTR 0.38 TCGA-EE-A29V-06 1 214170566 214170566 G A PROX1 Missense_Mutation p.E230K 0.36 tolerated(0.32) possibly_damaging(0.519) TCGA-EE-A29V-06 1 215914744 215914744 C T USH2A Missense_Mutation p.G3895E 0.37 probably_damaging(1) TCGA-EE-A29V-06 1 216040418 216040418 C T USH2A Missense_Mutation p.E2926K 0.42 benign(0.003) TCGA-EE-A29V-06 1 228432138 228432138 C A OBSCN Missense_Mutation p.S1208Y 0.35 possibly_damaging(0.895) TCGA-EE-A29V-06 1 233802523 233802523 G A KCNK1 Missense_Mutation p.A180T 0.54 tolerated(0.13) possibly_damaging(0.662) TCGA-EE-A29V-06 1 236399106 236399106 G A ERO1LB Missense_Mutation p.P219L 0.52 deleterious(0.05) probably_damaging(1) TCGA-EE-A29V-06 1 237016305 237016305 C T MTR Missense_Mutation p.H624Y 0.17 deleterious(0.01) benign(0.065) TCGA-EE-A29V-06 1 237758937 237758937 G A RYR2 Missense_Mutation p.E1526K 0.48 probably_damaging(0.999) TCGA-EE-A29V-06 1 237777781 237777781 G A RYR2 Missense_Mutation p.D1785N 0.37 benign(0.046) TCGA-EE-A29V-06 1 237806719 237806719 C T RYR2 Silent p.I2438I 0.38 TCGA-EE-A29V-06 1 237947468 237947468 C T RYR2 Silent p.I4152I 0.42 TCGA-EE-A29V-06 1 23908083 23908083 G A MDS2 RNA 0.38 TCGA-EE-A29V-06 1 240370124 240370124 G A FMN2 Missense_Mutation p.G671E 0.34 unknown(0) TCGA-EE-A29V-06 1 24147083 24147083 C T HMGCL Missense_Mutation p.V21I 0.30 tolerated_low_confidence(0.31) benign(0.002) TCGA-EE-A29V-06 1 245530263 245530263 C T KIF26B Missense_Mutation p.A198V 0.35 deleterious(0) unknown(0) TCGA-EE-A29V-06 1 245704184 245704184 C T KIF26B Missense_Mutation p.P428S 0.31 tolerated(0.05) unknown(0) TCGA-EE-A29V-06 1 245704248 245704248 G A KIF26B Missense_Mutation p.G449D 0.20 deleterious(0) unknown(0) TCGA-EE-A29V-06 1 247588906 247588906 G A NLRP3 Intron 0.21 TCGA-EE-A29V-06 1 247615041 247615041 C T OR2B11 Missense_Mutation p.V82I 0.34 tolerated(0.33) probably_damaging(0.97) TCGA-EE-A29V-06 1 247695288 247695288 C T OR2C3 Missense_Mutation p.D176N 0.55 tolerated(0.11) benign(0.033) TCGA-EE-A29V-06 1 247737453 247737453 G A GCSAML Silent p.E59E 0.40 TCGA-EE-A29V-06 1 248113064 248113064 G A OR2L8 Missense_Mutation p.R302Q 0.42 deleterious(0.02) benign(0.091) TCGA-EE-A29V-06 1 248366576 248366576 G A OR2M3 Missense_Mutation p.M69I 0.29 tolerated(0.08) benign(0.111) TCGA-EE-A29V-06 1 248525508 248525508 T G OR2T4 Missense_Mutation p.F209C 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 1 25812149 25812149 C T TMEM57 Silent p.I453I 0.29 TCGA-EE-A29V-06 1 26085109 26085109 G A MAN1C1 Missense_Mutation p.G319D 0.28 deleterious(0.01) benign(0.413) TCGA-EE-A29V-06 1 26887601 26887601 C T RPS6KA1 Silent p.H478H 0.38 TCGA-EE-A29V-06 1 27223982 27223982 G A GPATCH3 Missense_Mutation p.S229F 0.30 deleterious(0) probably_damaging(0.923) TCGA-EE-A29V-06 1 28071294 28071294 C T FAM76A Missense_Mutation p.R196C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29V-06 1 29314203 29314203 C T EPB41 Missense_Mutation p.S85L 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29V-06 1 32498788 32498788 G A KHDRBS1 Splice_Site p.X209_splice 0.41 TCGA-EE-A29V-06 1 3334519 3334519 C T PRDM16 Missense_Mutation p.S940F 0.38 tolerated(0.14) probably_damaging(0.927) TCGA-EE-A29V-06 1 3334520 3334520 C T PRDM16 Silent p.S940S 0.38 TCGA-EE-A29V-06 1 34035068 34035068 G A CSMD2 Silent p.I2681I 0.24 TCGA-EE-A29V-06 1 34401395 34401395 G A CSMD2 Silent p.S186S 0.30 TCGA-EE-A29V-06 1 34677852 34677852 C T C1orf94 Silent p.F522F 0.35 TCGA-EE-A29V-06 1 35477575 35477575 G A ZMYM6 Silent p.T326T 0.19 TCGA-EE-A29V-06 1 35477576 35477576 G A ZMYM6 Missense_Mutation p.T326I 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.807) TCGA-EE-A29V-06 1 36643568 36643568 C T MAP7D1 Missense_Mutation p.P492S 0.15 probably_damaging(0.987) TCGA-EE-A29V-06 1 36884634 36884634 T C OSCP1 Silent p.P327P 0.34 TCGA-EE-A29V-06 1 39880053 39880053 C T KIAA0754 Silent p.D1236D 0.37 TCGA-EE-A29V-06 1 39880054 39880054 C T KIAA0754 Missense_Mutation p.L1237F 0.33 unknown(0) TCGA-EE-A29V-06 1 39945528 39945528 C T MACF1 Silent p.S5251S 0.32 TCGA-EE-A29V-06 1 39945529 39945529 C T MACF1 Nonsense_Mutation p.Q5252* 0.30 TCGA-EE-A29V-06 1 43903269 43903269 C T SZT2 Silent p.L2041L 0.21 TCGA-EE-A29V-06 1 44422550 44422550 C T IPO13 Silent p.F391F 0.38 TCGA-EE-A29V-06 1 45293690 45293690 G A PTCH2 Missense_Mutation p.S628F 0.48 tolerated(0.1) benign(0.142) TCGA-EE-A29V-06 1 47400739 47400739 G A CYP4A11 Silent p.T241T 0.29 TCGA-EE-A29V-06 1 58946769 58946769 C T OMA1 Silent p.T481T 0.44 TCGA-EE-A29V-06 1 60377919 60377919 C T CYP2J2 Silent p.R146R 0.25 TCGA-EE-A29V-06 1 6202251 6202251 C T CHD5 Silent p.R791R 0.33 TCGA-EE-A29V-06 1 6203991 6203991 C T CHD5 Silent p.R645R 0.38 TCGA-EE-A29V-06 1 64038153 64038153 G A EFCAB7 Nonsense_Mutation p.W619* 0.21 TCGA-EE-A29V-06 1 65301108 65301108 G A JAK1 Silent p.L1114L 0.21 TCGA-EE-A29V-06 1 65301109 65301109 G A JAK1 Silent p.R1113R 0.22 TCGA-EE-A29V-06 1 70452014 70452014 C T LRRC7 Silent p.A254A 0.48 TCGA-EE-A29V-06 1 74506976 74506976 C T LRRIQ3 Missense_Mutation p.E547K 0.43 tolerated(0.17) benign(0.012) TCGA-EE-A29V-06 1 74834741 74834741 C T FPGT-TNNI3K Missense_Mutation p.P567S 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A29V-06 1 75101972 75101972 G A C1orf173 Missense_Mutation p.P199S 0.39 tolerated(0.08) possibly_damaging(0.511) TCGA-EE-A29V-06 1 75679471 75679471 C G SLC44A5 Silent p.L627L 0.35 TCGA-EE-A29V-06 1 76262711 76262711 C T MSH4 Missense_Mutation p.P14L 0.45 tolerated_low_confidence(0.05) benign(0.041) TCGA-EE-A29V-06 1 7724037 7724037 C T CAMTA1 Missense_Mutation p.P477L 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29V-06 1 85624759 85624759 G C SYDE2 Missense_Mutation p.R1087G 0.34 deleterious(0) probably_damaging(0.985) TCGA-EE-A29V-06 1 9011534 9011534 G A CA6 Intron 0.31 TCGA-EE-A29V-06 1 9098036 9098036 G A SLC2A5 Missense_Mutation p.R408W 0.41 deleterious(0.02) probably_damaging(1) TCGA-EE-A29V-06 1 91845776 91845776 C T HFM1 Silent p.R297R 0.27 TCGA-EE-A29V-06 1 94012481 94012481 G A FNBP1L Missense_Mutation p.E453K 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A29V-06 1 948866 948866 C T ISG15 5'UTR 0.38 TCGA-EE-A29V-06 1 980598 980598 A G AGRN Missense_Mutation p.Y771C 0.31 deleterious(0.02) possibly_damaging(0.759) TCGA-EE-A29V-06 20 10273538 10273538 G A SNAP25 Intron 0.25 TCGA-EE-A29V-06 20 18396034 18396034 G T DZANK1 Silent p.S338S 0.39 TCGA-EE-A29V-06 20 30028482 30028482 C T DEFB123 5'UTR 0.37 TCGA-EE-A29V-06 20 30816216 30816216 C T POFUT1 Silent p.V231V 0.33 TCGA-EE-A29V-06 20 30818753 30818753 G A POFUT1 Silent p.E289E 0.25 TCGA-EE-A29V-06 20 34220449 34220449 G A CPNE1 Missense_Mutation p.S105F 0.32 deleterious(0) possibly_damaging(0.62) TCGA-EE-A29V-06 20 35555605 35555612 GAGCAAGT - SAMHD1 Frame_Shift_Del p.L224Pfs*8 0.20 TCGA-EE-A29V-06 20 3678478 3678478 T G SIGLEC1 Missense_Mutation p.N697H 0.31 deleterious(0) possibly_damaging(0.612) TCGA-EE-A29V-06 20 3734700 3734700 G A C20orf27 3'UTR 0.34 TCGA-EE-A29V-06 20 3734701 3734701 G A C20orf27 3'UTR 0.33 TCGA-EE-A29V-06 20 37396215 37396215 G T ACTR5 Missense_Mutation p.M514I 0.33 tolerated(0.38) benign(0.057) TCGA-EE-A29V-06 20 3835222 3835222 C T MAVS 5'UTR 0.34 TCGA-EE-A29V-06 20 39791897 39791897 C T PLCG1 Silent p.F257F 0.43 TCGA-EE-A29V-06 20 40713343 40713343 C T PTPRT Missense_Mutation p.G1372E 0.39 deleterious(0) probably_damaging(0.935) TCGA-EE-A29V-06 20 42969931 42969931 G A R3HDML Silent p.Q119Q 0.31 TCGA-EE-A29V-06 20 43723761 43723761 C T KCNS1 Missense_Mutation p.G444E 0.42 deleterious(0.03) probably_damaging(1) TCGA-EE-A29V-06 20 44521472 44521472 C T CTSA Missense_Mutation p.P203S 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A29V-06 20 44594306 44594306 G A ZNF335 Missense_Mutation p.R355W 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 20 44639787 44639787 C T MMP9 Missense_Mutation p.P219S 0.35 tolerated(0.15) benign(0.008) TCGA-EE-A29V-06 20 44692186 44692186 G A NCOA5 Silent p.I321I 0.40 TCGA-EE-A29V-06 20 4680141 4680141 G A PRNP Missense_Mutation p.G92E 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29V-06 20 47585801 47585801 C T ARFGEF2 Missense_Mutation p.P393S 0.41 tolerated(0.2) benign(0.06) TCGA-EE-A29V-06 20 47852896 47852896 C T DDX27 Silent p.T543T 0.22 TCGA-EE-A29V-06 20 49195771 49195771 C T PTPN1 Missense_Mutation p.R257W 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 20 49576659 49576659 C T MOCS3 Missense_Mutation p.S427F 0.32 deleterious(0.03) benign(0.428) TCGA-EE-A29V-06 20 50048876 50048876 T C NFATC2 Missense_Mutation p.N817S 0.38 tolerated(0.34) benign(0.003) TCGA-EE-A29V-06 20 50407835 50407835 G A SALL4 Missense_Mutation p.S396F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 20 51870879 51870879 G A TSHZ2 Missense_Mutation p.M294I 0.29 deleterious(0) probably_damaging(0.979) TCGA-EE-A29V-06 20 53205106 53205106 G A DOK5 Missense_Mutation p.D87N 0.31 tolerated(0.06) possibly_damaging(0.473) TCGA-EE-A29V-06 20 53267024 53267024 A G DOK5 3'UTR 0.48 TCGA-EE-A29V-06 20 57828080 57828080 C T ZNF831 Missense_Mutation p.P1359S 0.35 tolerated(0.4) benign(0.026) TCGA-EE-A29V-06 20 61513394 61513394 G A DIDO1 Missense_Mutation p.S1305L 0.27 benign(0.17) TCGA-EE-A29V-06 20 61870828 61870828 G A BIRC7 Silent p.L256L 0.31 TCGA-EE-A29V-06 20 61981885 61981885 G A CHRNA4 Missense_Mutation p.T293I 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 20 62839626 62839626 G A MYT1 Silent p.R359R 0.38 TCGA-EE-A29V-06 20 7895057 7895057 G A HAO1 Missense_Mutation p.S100F 0.43 deleterious(0) possibly_damaging(0.671) TCGA-EE-A29V-06 20 8713958 8713958 C T PLCB1 Silent p.F654F 0.35 TCGA-EE-A29V-06 20 9351883 9351883 G A PLCB4 Missense_Mutation p.G176R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 20 9388564 9388564 G A PLCB4 Missense_Mutation p.G538S 0.33 tolerated(0.36) benign(0.093) TCGA-EE-A29V-06 21 15561692 15561692 G A LIPI Missense_Mutation p.S53F 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 21 22881216 22881216 G A NCAM2 Missense_Mutation p.G708R 0.45 tolerated(0.09) probably_damaging(0.939) TCGA-EE-A29V-06 21 31797904 31797904 G A KRTAP13-3 Silent p.S109S 0.35 TCGA-EE-A29V-06 21 34030093 34030093 C G SYNJ1 Missense_Mutation p.K837N 0.16 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29V-06 21 38516888 38516888 G C TTC3 Silent p.V612V 0.30 TCGA-EE-A29V-06 21 39671360 39671360 C T KCNJ15 Silent p.I59I 0.35 TCGA-EE-A29V-06 21 43411387 43411387 G A ZBTB21 Missense_Mutation p.H940Y 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A29V-06 21 43864686 43864686 C T UBASH3A Missense_Mutation p.S594F 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 21 44282451 44282451 G A WDR4 Silent p.I169I 0.50 TCGA-EE-A29V-06 21 47545180 47545180 G A COL6A2 Missense_Mutation p.E591K 0.44 deleterious(0.01) benign(0.097) TCGA-EE-A29V-06 21 47655160 47655160 C T MCM3AP 3'UTR 0.19 TCGA-EE-A29V-06 22 17684453 17684453 C T CECR1 Silent p.P251P 0.19 TCGA-EE-A29V-06 22 18209980 18209980 C T BCL2L13 Missense_Mutation p.L380F 0.37 tolerated_low_confidence(0.22) benign(0.037) TCGA-EE-A29V-06 22 19222165 19222165 G A CLTCL1 Missense_Mutation p.P345L 0.34 tolerated(0.61) benign(0.053) TCGA-EE-A29V-06 22 20780370 20780370 G A SCARF2 Silent p.A636A 0.42 TCGA-EE-A29V-06 22 21332232 21332232 C T AIFM3 Missense_Mutation p.P472L 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A29V-06 22 21332233 21332233 C T AIFM3 Silent p.P472P 0.38 TCGA-EE-A29V-06 22 22142678 22142678 C T MAPK1 Splice_Site p.X242_splice 0.29 TCGA-EE-A29V-06 22 23077429 23077429 T A IGLV2-18 Missense_Mutation p.I69N 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A29V-06 22 23090285 23090285 G A IGLV3-16 Missense_Mutation p.G75E 0.23 deleterious(0.03) probably_damaging(0.939) TCGA-EE-A29V-06 22 23243432 23243432 G A IGLC2 Missense_Mutation p.G93E 0.35 possibly_damaging(0.505) TCGA-EE-A29V-06 22 24123412 24123412 C A MMP11 Silent p.S297S 0.43 TCGA-EE-A29V-06 22 26117358 26117358 A T ADRBK2 Missense_Mutation p.Q633H 0.29 tolerated_low_confidence(0.11) probably_damaging(0.928) TCGA-EE-A29V-06 22 26884359 26884359 C T SRRD Missense_Mutation p.P172S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 22 29182126 29182126 C T CCDC117 Missense_Mutation p.L218F 0.37 tolerated(0.19) probably_damaging(0.934) TCGA-EE-A29V-06 22 30124621 30124621 G A CABP7 Missense_Mutation p.D86N 0.50 tolerated(0.35) probably_damaging(0.998) TCGA-EE-A29V-06 22 31851278 31851278 G A EIF4ENIF1 Missense_Mutation p.P375S 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A29V-06 22 35742938 35742938 G A TOM1 Missense_Mutation p.E434K 0.25 deleterious(0.02) benign(0.272) TCGA-EE-A29V-06 22 35815966 35815966 G A MCM5 Missense_Mutation p.R598K 0.27 tolerated(0.59) benign(0.002) TCGA-EE-A29V-06 22 35815967 35815967 G A MCM5 Silent p.R598R 0.27 TCGA-EE-A29V-06 22 35947680 35947680 C T RASD2 Silent p.P134P 0.34 TCGA-EE-A29V-06 22 36123135 36123135 G A APOL5 Silent p.L340L 0.50 TCGA-EE-A29V-06 22 38120377 38120377 G C TRIOBP Missense_Mutation p.R605P 0.13 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A29V-06 22 38313756 38313756 C T MICALL1 Missense_Mutation p.P127L 0.20 tolerated(0.06) benign(0.004) TCGA-EE-A29V-06 22 39222537 39222537 G A NPTXR Missense_Mutation p.H356Y 0.44 deleterious(0) benign(0.306) TCGA-EE-A29V-06 22 39387460 39387460 C T APOBEC3B Missense_Mutation p.P283S 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A29V-06 22 39387461 39387461 C T APOBEC3B Missense_Mutation p.P283L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 22 41077071 41077071 G A MCHR1 Silent p.K136K 0.34 TCGA-EE-A29V-06 22 43088875 43088875 G A A4GALT 3'UTR 0.28 TCGA-EE-A29V-06 22 44392289 44392289 G A SAMM50 3'UTR 0.36 TCGA-EE-A29V-06 22 44392290 44392290 G A SAMM50 3'UTR 0.36 TCGA-EE-A29V-06 22 47059987 47059987 C T GRAMD4 Silent p.S230S 0.33 TCGA-EE-A29V-06 22 50278162 50278162 C T ZBED4 Silent p.S284S 0.24 TCGA-EE-A29V-06 22 50356709 50356709 C T PIM3 Silent p.D305D 0.27 TCGA-EE-A29V-06 22 50356710 50356710 C T PIM3 Silent p.L306L 0.27 TCGA-EE-A29V-06 22 50537966 50537966 C T MOV10L1 Missense_Mutation p.S126F 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A29V-06 22 50644880 50644880 T C SELO Missense_Mutation p.V230A 0.41 tolerated(0.1) benign(0.008) TCGA-EE-A29V-06 2 100010788 100010788 G A EIF5B Missense_Mutation p.G980E 0.40 probably_damaging(1) TCGA-EE-A29V-06 2 101086967 101086967 C T NMS Missense_Mutation p.P6L 0.28 deleterious(0) benign(0.36) TCGA-EE-A29V-06 2 102964509 102964509 C T IL1RL1 Silent p.L359L 0.28 TCGA-EE-A29V-06 2 103120161 103120161 C T SLC9A4 Silent p.I325I 0.28 TCGA-EE-A29V-06 2 103300793 103300793 C T SLC9A2 Silent p.L475L 0.25 TCGA-EE-A29V-06 2 105912847 105912847 C T TGFBRAP1 Missense_Mutation p.G335E 0.24 tolerated(0.06) benign(0.382) TCGA-EE-A29V-06 2 105912848 105912848 C T TGFBRAP1 Missense_Mutation p.G335R 0.24 deleterious(0.04) benign(0.15) TCGA-EE-A29V-06 2 108626916 108626916 A C SLC5A7 Missense_Mutation p.T448P 0.46 tolerated(0.26) benign(0.243) TCGA-EE-A29V-06 2 108627290 108627290 G A SLC5A7 Silent p.G572G 0.32 TCGA-EE-A29V-06 2 109522810 109522810 C T EDAR Silent p.R326R 0.13 TCGA-EE-A29V-06 2 111556243 111556243 C T ACOXL Silent p.A134A 0.34 TCGA-EE-A29V-06 2 111881509 111881509 C T BCL2L11 Missense_Mutation p.P63S 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.488) TCGA-EE-A29V-06 2 113783693 113783693 C T IL36B Nonsense_Mutation p.W126* 0.30 TCGA-EE-A29V-06 2 113950646 113950646 G T PSD4 Silent p.V620V 0.19 TCGA-EE-A29V-06 2 11780601 11780601 C T GREB1 3'UTR 0.28 TCGA-EE-A29V-06 2 11923964 11923964 G A LPIN1 Missense_Mutation p.S474N 0.33 tolerated(0.08) benign(0.426) TCGA-EE-A29V-06 2 120858317 120858317 T G EPB41L5 Missense_Mutation p.S422A 0.47 tolerated(0.36) benign(0.001) TCGA-EE-A29V-06 2 121747777 121747777 C T GLI2 Silent p.P1429P 0.33 TCGA-EE-A29V-06 2 122122776 122122776 G A CLASP1 Missense_Mutation p.A1324V 0.40 deleterious(0) possibly_damaging(0.507) TCGA-EE-A29V-06 2 125192172 125192172 G A CNTNAP5 Missense_Mutation p.G214E 0.32 tolerated(0.05) benign(0.108) TCGA-EE-A29V-06 2 125204409 125204409 G A CNTNAP5 Silent p.S271S 0.28 TCGA-EE-A29V-06 2 128747283 128747283 G A SAP130 Silent p.I571I 0.43 TCGA-EE-A29V-06 2 131487345 131487345 G A GPR148 Missense_Mutation p.M207I 0.28 deleterious(0.04) benign(0.004) TCGA-EE-A29V-06 2 131985869 131985869 C T POTEE Silent p.L324L 0.33 TCGA-EE-A29V-06 2 133489377 133489377 G A NCKAP5 Silent p.S1792S 0.42 TCGA-EE-A29V-06 2 136691503 136691503 G A DARS Missense_Mutation p.R161W 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A29V-06 2 138413140 138413140 C T THSD7B Missense_Mutation p.H1342Y 0.50 tolerated(0.33) unknown(0) TCGA-EE-A29V-06 2 141032011 141032011 C T LRP1B Missense_Mutation p.S4375N 0.30 benign(0) TCGA-EE-A29V-06 2 141108405 141108405 G A LRP1B Silent p.I3951I 0.24 TCGA-EE-A29V-06 2 141625795 141625795 G A LRP1B Missense_Mutation p.R1403C 0.43 benign(0.112) TCGA-EE-A29V-06 2 1418267 1418267 C T TPO Silent p.L29L 0.44 TCGA-EE-A29V-06 2 1418268 1418268 C T TPO Missense_Mutation p.L30F 0.46 tolerated(0.27) benign(0.004) TCGA-EE-A29V-06 2 153417498 153417498 C T FMNL2 Missense_Mutation p.P182L 0.44 benign(0.43) TCGA-EE-A29V-06 2 155158006 155158006 C T GALNT13 Missense_Mutation p.P354S 0.35 deleterious(0.05) benign(0.15) TCGA-EE-A29V-06 2 155555424 155555424 T C KCNJ3 Missense_Mutation p.F46S 0.28 deleterious(0) possibly_damaging(0.531) TCGA-EE-A29V-06 2 157186237 157186237 C T NR4A2 Silent p.Q154Q 0.38 TCGA-EE-A29V-06 2 158178034 158178034 G A ERMN Nonsense_Mutation p.R215* 0.35 TCGA-EE-A29V-06 2 160206705 160206705 G A BAZ2B Silent p.F1459F 0.22 TCGA-EE-A29V-06 2 160869867 160869867 C T PLA2R1 Missense_Mutation p.G524E 0.37 tolerated(0.47) benign(0.013) TCGA-EE-A29V-06 2 165551322 165551322 G A COBLL1 Silent p.A898A 0.40 TCGA-EE-A29V-06 2 167060887 167060887 G A SCN9A Missense_Mutation p.P1485S 0.46 deleterious(0) probably_damaging(0.989) TCGA-EE-A29V-06 2 167328867 167328867 C T SCN7A Missense_Mutation p.D178N 0.40 tolerated(0.05) possibly_damaging(0.585) TCGA-EE-A29V-06 2 168105004 168105004 C T XIRP2 Missense_Mutation p.P2368S 0.30 benign(0.291) TCGA-EE-A29V-06 2 170011104 170011104 G A LRP2 Missense_Mutation p.P4054L 0.33 benign(0.045) TCGA-EE-A29V-06 2 170011105 170011105 G A LRP2 Missense_Mutation p.P4054S 0.35 benign(0.103) TCGA-EE-A29V-06 2 170135925 170135925 T C LRP2 Missense_Mutation p.N508D 0.36 benign(0.042) TCGA-EE-A29V-06 2 171678638 171678638 A G GAD1 Missense_Mutation p.K42E 0.41 tolerated_low_confidence(0.06) benign(0.192) TCGA-EE-A29V-06 2 175779842 175779842 C T CHN1 Silent p.G68G 0.40 TCGA-EE-A29V-06 2 17860180 17860180 C T SMC6 Silent p.R952R 0.20 TCGA-EE-A29V-06 2 179395008 179395008 C T TTN Missense_Mutation p.G35445E 0.27 TCGA-EE-A29V-06 2 179416693 179416693 C A TTN Missense_Mutation p.V30312F 0.36 TCGA-EE-A29V-06 2 179422840 179422840 C T TTN Missense_Mutation p.D29081N 0.36 TCGA-EE-A29V-06 2 179440199 179440199 G A TTN Missense_Mutation p.P23554S 0.35 TCGA-EE-A29V-06 2 179453660 179453660 C T TTN Missense_Mutation p.G20931E 0.28 TCGA-EE-A29V-06 2 179477694 179477694 G A TTN Missense_Mutation p.S16585F 0.28 TCGA-EE-A29V-06 2 179481736 179481736 T C TTN Silent p.E15960E 0.30 TCGA-EE-A29V-06 2 179571401 179571401 C T TTN Missense_Mutation p.G9734R 0.34 TCGA-EE-A29V-06 2 179582901 179582901 C T TTN Missense_Mutation p.G8278R 0.56 TCGA-EE-A29V-06 2 179604720 179604720 G A TTN Missense_Mutation p.L4414F 0.38 TCGA-EE-A29V-06 2 179605281 179605281 T C TTN Missense_Mutation p.T4227A 0.36 TCGA-EE-A29V-06 2 179614760 179614760 C A TTN Intron 0.44 TCGA-EE-A29V-06 2 179634502 179634502 G A TTN Missense_Mutation p.H2936Y 0.31 TCGA-EE-A29V-06 2 185803578 185803578 G A ZNF804A Missense_Mutation p.G1152E 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29V-06 2 186672381 186672381 C T FSIP2 Silent p.N6205N 0.32 TCGA-EE-A29V-06 2 187511431 187511431 C T ITGAV Missense_Mutation p.P393L 0.39 deleterious(0) possibly_damaging(0.46) TCGA-EE-A29V-06 2 18765931 18765931 C T NT5C1B Missense_Mutation p.G251E 0.22 tolerated_low_confidence(0.96) benign(0.028) TCGA-EE-A29V-06 2 190323591 190323591 C T WDR75 Missense_Mutation p.R228C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 2 191851617 191851617 G A STAT1 Missense_Mutation p.S395F 0.38 deleterious(0) possibly_damaging(0.684) TCGA-EE-A29V-06 2 196753008 196753008 C T DNAH7 Missense_Mutation p.V1794I 0.32 tolerated(0.06) benign(0.001) TCGA-EE-A29V-06 2 196834767 196834767 C T DNAH7 Missense_Mutation p.E704K 0.24 tolerated(0.12) benign(0.028) TCGA-EE-A29V-06 2 197184260 197184260 G A HECW2 Missense_Mutation p.P452S 0.21 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EE-A29V-06 2 197297971 197297971 G A HECW2 Silent p.S59S 0.31 TCGA-EE-A29V-06 2 198948626 198948626 C T PLCL1 Missense_Mutation p.R129C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 2 203620370 203620370 T - FAM117B Frame_Shift_Del p.E359Rfs*144 0.28 TCGA-EE-A29V-06 2 204304926 204304926 G A RAPH1 Missense_Mutation p.S996L 0.31 unknown(0) TCGA-EE-A29V-06 2 211018925 211018925 G A KANSL1L Missense_Mutation p.H128Y 0.31 deleterious(0.02) possibly_damaging(0.691) TCGA-EE-A29V-06 2 211452803 211452803 G A CPS1 Missense_Mutation p.G221R 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A29V-06 2 21236096 21236096 G A APOB Silent p.S1384S 0.30 TCGA-EE-A29V-06 2 215645294 215645294 G A BARD1 Missense_Mutation p.A435V 0.56 deleterious(0) probably_damaging(0.977) TCGA-EE-A29V-06 2 216283967 216283967 G A FN1 Missense_Mutation p.P606L 0.34 tolerated(0.06) benign(0.127) TCGA-EE-A29V-06 2 219231700 219231700 G A C2orf62 Intron 0.55 TCGA-EE-A29V-06 2 219508735 219508735 G A ZNF142 Missense_Mutation p.A835V 0.26 tolerated(1) possibly_damaging(0.483) TCGA-EE-A29V-06 2 219538446 219538446 C T STK36 Silent p.P61P 0.44 TCGA-EE-A29V-06 2 219602993 219602993 C T TTLL4 Silent p.A198A 0.25 TCGA-EE-A29V-06 2 220097914 220097914 G A ANKZF1 Splice_Site p.X224_splice 0.34 TCGA-EE-A29V-06 2 224856526 224856526 G A SERPINE2 Missense_Mutation p.R239W 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A29V-06 2 228882158 228882158 C T SPHKAP Missense_Mutation p.E1138K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 2 231254709 231254709 G C SP140L Missense_Mutation p.G312A 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 2 234072371 234072371 A C INPP5D Missense_Mutation p.K408T 0.47 deleterious(0.05) benign(0.262) TCGA-EE-A29V-06 2 234104085 234104085 G A INPP5D Silent p.K867K 0.30 TCGA-EE-A29V-06 2 234237135 234237135 G A SAG Missense_Mutation p.R175Q 0.40 tolerated(0.05) possibly_damaging(0.747) TCGA-EE-A29V-06 2 234442328 234442328 T A USP40 Missense_Mutation p.Q434L 0.43 deleterious(0.04) benign(0.287) TCGA-EE-A29V-06 2 234460057 234460057 G A USP40 Missense_Mutation p.P280S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 2 234627950 234627950 G A UGT1A4 Missense_Mutation p.A162T 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 2 236957790 236957790 G A AGAP1 Missense_Mutation p.R660Q 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A29V-06 2 238290009 238290009 G A COL6A3 Silent p.I482I 0.30 TCGA-EE-A29V-06 2 239079622 239079622 G A ILKAP Missense_Mutation p.P334S 0.37 tolerated(0.32) benign(0.173) TCGA-EE-A29V-06 2 239079623 239079623 G A ILKAP Silent p.T333T 0.37 TCGA-EE-A29V-06 2 241465794 241465794 G A ANKMY1 Missense_Mutation p.P252L 0.29 tolerated(0.79) benign(0.003) TCGA-EE-A29V-06 2 241517032 241517032 C A RNPEPL1 Missense_Mutation p.T403N 0.24 deleterious(0) probably_damaging(0.967) TCGA-EE-A29V-06 2 241569905 241569905 G A GPR35 Missense_Mutation p.G210E 0.28 tolerated(0.09) possibly_damaging(0.837) TCGA-EE-A29V-06 2 242039099 242039099 G A MTERFD2 Missense_Mutation p.L78F 0.43 tolerated(0.5) possibly_damaging(0.877) TCGA-EE-A29V-06 2 26501646 26501646 C T HADHB Nonsense_Mutation p.R203* 0.27 TCGA-EE-A29V-06 2 26702454 26702454 C T OTOF Silent p.G660G 0.28 TCGA-EE-A29V-06 2 27278857 27278857 C T AGBL5 Missense_Mutation p.P406S 0.23 tolerated(0.39) benign(0.004) TCGA-EE-A29V-06 2 27278858 27278858 C T AGBL5 Missense_Mutation p.P406L 0.24 tolerated(0.14) benign(0.102) TCGA-EE-A29V-06 2 33783992 33783992 G A RASGRP3 Nonsense_Mutation p.W653* 0.35 TCGA-EE-A29V-06 2 43919774 43919774 A C PLEKHH2 Missense_Mutation p.Q103P 0.34 tolerated(0.09) possibly_damaging(0.616) TCGA-EE-A29V-06 2 49244644 49244644 G A FSHR Missense_Mutation p.P120S 0.30 deleterious(0.01) possibly_damaging(0.448) TCGA-EE-A29V-06 2 61493252 61493252 C T USP34 Silent p.K1828K 0.38 TCGA-EE-A29V-06 2 67630890 67630890 C T ETAA1 Missense_Mutation p.S359F 0.28 tolerated(0.09) benign(0.033) TCGA-EE-A29V-06 2 70890603 70890603 G A ADD2 Missense_Mutation p.P712L 0.31 deleterious(0) unknown(0) TCGA-EE-A29V-06 2 71730418 71730418 C T DYSF Missense_Mutation p.P105L 0.28 deleterious(0.03) possibly_damaging(0.885) TCGA-EE-A29V-06 2 74479337 74479337 C T SLC4A5 Missense_Mutation p.E483K 0.68 tolerated(0.33) possibly_damaging(0.83) TCGA-EE-A29V-06 2 80816453 80816453 G A CTNNA2 Missense_Mutation p.E678K 0.53 tolerated(0.07) probably_damaging(0.918) TCGA-EE-A29V-06 2 89161525 89161525 C T IGKC 5'Flank 0.45 TCGA-EE-A29V-06 2 89292083 89292083 G A IGKV1-8 Missense_Mutation p.P64S 0.39 deleterious(0.01) probably_damaging(0.93) TCGA-EE-A29V-06 2 89544517 89544517 C T IGKV2-30 Missense_Mutation p.G36E 0.39 deleterious(0) probably_damaging(0.965) TCGA-EE-A29V-06 2 97215195 97215195 G A ARID5A Silent p.Q86Q 0.25 TCGA-EE-A29V-06 2 98453576 98453576 G A TMEM131 Silent p.L256L 0.22 TCGA-EE-A29V-06 3 100961713 100961713 C T IMPG2 Silent p.Q947Q 0.32 TCGA-EE-A29V-06 3 108072514 108072514 G A HHLA2 Missense_Mutation p.G102E 0.34 tolerated(0.05) probably_damaging(1) TCGA-EE-A29V-06 3 108224661 108224661 C T MYH15 Nonsense_Mutation p.W55* 0.33 TCGA-EE-A29V-06 3 110852704 110852704 G C PVRL3 Missense_Mutation p.R431T 0.39 deleterious(0) benign(0.291) TCGA-EE-A29V-06 3 110852746 110852746 C T PVRL3 Missense_Mutation p.P445L 0.40 tolerated(0.09) benign(0.403) TCGA-EE-A29V-06 3 111795735 111795735 C T TMPRSS7 Silent p.P530P 0.32 TCGA-EE-A29V-06 3 112324500 112324500 C T CCDC80 Missense_Mutation p.G873R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 113375371 113375371 G C KIAA2018 Missense_Mutation p.R1720G 0.33 possibly_damaging(0.805) TCGA-EE-A29V-06 3 113795776 113795776 G A QTRTD1 Missense_Mutation p.E257K 0.23 deleterious(0.01) benign(0.198) TCGA-EE-A29V-06 3 113850117 113850117 G A DRD3 Missense_Mutation p.S285F 0.34 deleterious(0.01) possibly_damaging(0.789) TCGA-EE-A29V-06 3 113890711 113890711 G A DRD3 Silent p.I43I 0.26 TCGA-EE-A29V-06 3 113955368 113955368 C T ZNF80 Missense_Mutation p.G185E 0.31 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A29V-06 3 114026783 114026783 G A TIGIT Silent p.R180R 0.36 TCGA-EE-A29V-06 3 121304943 121304943 C T ARGFX Silent p.I148I 0.32 TCGA-EE-A29V-06 3 122645474 122645474 G A SEMA5B Silent p.L355L 0.24 TCGA-EE-A29V-06 3 122645475 122645475 G A SEMA5B Silent p.F354F 0.33 TCGA-EE-A29V-06 3 12421418 12421418 C T PPARG Nonsense_Mutation p.Q100* 0.55 TCGA-EE-A29V-06 3 124385441 124385441 G A KALRN Missense_Mutation p.G255E 0.28 deleterious(0.02) probably_damaging(1) TCGA-EE-A29V-06 3 124826509 124826509 C T SLC12A8 Silent p.L507L 0.39 TCGA-EE-A29V-06 3 124837628 124837628 G A SLC12A8 Silent p.F299F 0.43 TCGA-EE-A29V-06 3 124952458 124952458 G A ZNF148 Missense_Mutation p.S371L 0.42 tolerated(0.26) benign(0.113) TCGA-EE-A29V-06 3 128889945 128889945 G A CNBP Silent p.D133D 0.57 TCGA-EE-A29V-06 3 130095498 130095498 G A COL6A5 Silent p.V162V 0.38 TCGA-EE-A29V-06 3 130284201 130284201 G A COL6A6 Missense_Mutation p.R342Q 0.27 deleterious(0.04) benign(0.12) TCGA-EE-A29V-06 3 130354588 130354588 G A COL6A6 Missense_Mutation p.G1692R 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A29V-06 3 132222072 132222072 C T DNAJC13 Silent p.S1577S 0.22 TCGA-EE-A29V-06 3 136048787 136048787 C T PCCB Silent p.A533A 0.28 TCGA-EE-A29V-06 3 1363427 1363427 G A CNTN6 Silent p.P285P 0.49 TCGA-EE-A29V-06 3 140178396 140178396 C T CLSTN2 Missense_Mutation p.S336F 0.34 deleterious(0.02) benign(0.021) TCGA-EE-A29V-06 3 142217461 142217461 G A ATR Nonsense_Mutation p.R1846* 0.21 TCGA-EE-A29V-06 3 147120535 147120535 C T ZIC4 Missense_Mutation p.R67Q 0.25 tolerated_low_confidence(0.15) possibly_damaging(0.885) TCGA-EE-A29V-06 3 150690558 150690558 G A CLRN1 5'Flank 0.42 TCGA-EE-A29V-06 3 151165454 151165454 C T IGSF10 Missense_Mutation p.R772Q 0.35 tolerated(1) benign(0.002) TCGA-EE-A29V-06 3 15297671 15297671 C T SH3BP5 Silent p.R430R 0.50 TCGA-EE-A29V-06 3 154056017 154056017 C T GPR149 Missense_Mutation p.G556E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 15604946 15604946 G A HACL1 Silent p.S541S 0.48 TCGA-EE-A29V-06 3 15604947 15604947 G A HACL1 Missense_Mutation p.S541F 0.50 deleterious(0) benign(0.396) TCGA-EE-A29V-06 3 164786619 164786619 C T SI Missense_Mutation p.G125E 0.39 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A29V-06 3 169846497 169846497 G A PHC3 Missense_Mutation p.P588L 0.39 deleterious(0) possibly_damaging(0.849) TCGA-EE-A29V-06 3 172048392 172048392 C A FNDC3B Missense_Mutation p.P481T 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 172048393 172048393 C T FNDC3B Missense_Mutation p.P481L 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 3 179123136 179123136 A C GNB4 Missense_Mutation p.F253C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 179525587 179525587 G A PEX5L Silent p.T517T 0.35 TCGA-EE-A29V-06 3 184106458 184106458 C T CHRD Missense_Mutation p.P880S 0.28 tolerated(0.7) probably_damaging(0.998) TCGA-EE-A29V-06 3 185407217 185407217 G A IGF2BP2 Silent p.P201P 0.29 TCGA-EE-A29V-06 3 185823650 185823650 C T ETV5 Missense_Mutation p.G3E 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A29V-06 3 186940961 186940961 C T MASP1 Missense_Mutation p.G588D 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 189712072 189712072 C T LEPREL1 Missense_Mutation p.E212K 0.15 tolerated(0.38) benign(0.043) TCGA-EE-A29V-06 3 193032821 193032821 C T ATP13A5 Missense_Mutation p.E700K 0.23 deleterious(0.01) probably_damaging(1) TCGA-EE-A29V-06 3 19975238 19975238 G A EFHB Silent p.V91V 0.55 TCGA-EE-A29V-06 3 27326370 27326370 G A NEK10 Silent p.H624H 0.64 TCGA-EE-A29V-06 3 38104199 38104199 C T DLEC1 Missense_Mutation p.P334L 0.45 deleterious(0.04) probably_damaging(0.96) TCGA-EE-A29V-06 3 38743502 38743502 C T SCN10A Silent p.V1495V 0.34 TCGA-EE-A29V-06 3 38927620 38927620 C T SCN11A Missense_Mutation p.R982Q 0.31 tolerated(0.58) benign(0.011) TCGA-EE-A29V-06 3 39136169 39136169 G A WDR48 Missense_Mutation p.V657M 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A29V-06 3 41959954 41959954 G C ULK4 Missense_Mutation p.P241R 0.26 tolerated(0.23) possibly_damaging(0.815) TCGA-EE-A29V-06 3 42265111 42265111 G A TRAK1 Missense_Mutation p.R915Q 0.48 deleterious(0) probably_damaging(0.99) TCGA-EE-A29V-06 3 42781285 42781285 C T CCDC13 Silent p.R335R 0.33 TCGA-EE-A29V-06 3 44607118 44607118 G A ZKSCAN7 Missense_Mutation p.G188E 0.37 tolerated(0.99) benign(0.188) TCGA-EE-A29V-06 3 44986749 44986749 G A ZDHHC3 Silent p.F114F 0.29 TCGA-EE-A29V-06 3 46935487 46935487 C T PTH1R Silent p.L56L 0.31 TCGA-EE-A29V-06 3 4725191 4725191 C T ITPR1 Missense_Mutation p.R1080W 0.65 deleterious(0) probably_damaging(0.924) TCGA-EE-A29V-06 3 47298994 47298994 G A KIF9 Silent p.I346I 0.39 TCGA-EE-A29V-06 3 47447872 47447872 C T PTPN23 Silent p.L202L 0.40 TCGA-EE-A29V-06 3 47460943 47460943 C T SCAP Silent p.E605E 0.30 TCGA-EE-A29V-06 3 49759664 49759664 C T GMPPB Silent p.V256V 0.31 TCGA-EE-A29V-06 3 49836220 49836220 C T CDHR4 Intron 0.50 TCGA-EE-A29V-06 3 50224101 50224101 C T SEMA3F Silent p.F623F 0.22 TCGA-EE-A29V-06 3 51418527 51418527 G A DOCK3 Missense_Mutation p.G1877D 0.40 tolerated_low_confidence(0.39) possibly_damaging(0.556) TCGA-EE-A29V-06 3 51969227 51969227 G A RRP9 Silent p.S340S 0.30 TCGA-EE-A29V-06 3 52539146 52539146 C T STAB1 Missense_Mutation p.P502L 0.28 tolerated(0.7) benign(0.001) TCGA-EE-A29V-06 3 52814382 52814382 C T ITIH1 Missense_Mutation p.S224F 0.38 deleterious(0.01) benign(0.076) TCGA-EE-A29V-06 3 52814383 52814383 C T ITIH1 Silent p.S224S 0.40 TCGA-EE-A29V-06 3 53133502 53133502 C T RFT1 Missense_Mutation p.G368D 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 53133503 53133503 C T RFT1 Splice_Site p.X368_splice 0.24 TCGA-EE-A29V-06 3 54905578 54905578 A G CACNA2D3 Missense_Mutation p.K547E 0.44 tolerated(0.06) possibly_damaging(0.575) TCGA-EE-A29V-06 3 54930690 54930690 T C CACNA2D3 Intron 0.30 TCGA-EE-A29V-06 3 56330398 56330398 G A ERC2 Silent p.L241L 0.34 TCGA-EE-A29V-06 3 58178597 58178597 G A DNASE1L3 Intron 0.42 TCGA-EE-A29V-06 3 58183700 58183700 G A DNASE1L3 Silent p.F184F 0.38 TCGA-EE-A29V-06 3 64627614 64627614 C T ADAMTS9 Missense_Mutation p.G589E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 3 78667166 78667166 G A ROBO1 Missense_Mutation p.P1301S 0.23 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A29V-06 3 89480431 89480431 T C EPHA3 Silent p.S756S 0.39 TCGA-EE-A29V-06 3 9036042 9036042 A T SRGAP3 Missense_Mutation p.I798K 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A29V-06 3 98073321 98073321 C T OR5K4 Silent p.I208I 0.50 TCGA-EE-A29V-06 4 104027335 104027335 C T CENPE 3'UTR 0.37 TCGA-EE-A29V-06 4 10566402 10566402 C T CLNK Splice_Site p.X98_splice 0.39 TCGA-EE-A29V-06 4 110585478 110585478 G A CCDC109B Missense_Mutation p.D127N 0.22 deleterious(0.01) possibly_damaging(0.58) TCGA-EE-A29V-06 4 111397743 111397743 C T ENPEP Missense_Mutation p.S58F 0.38 deleterious(0.01) possibly_damaging(0.653) TCGA-EE-A29V-06 4 114279687 114279687 C T ANK2 Missense_Mutation p.P3305S 0.28 benign(0.053) TCGA-EE-A29V-06 4 115544111 115544111 C T UGT8 Silent p.I25I 0.26 TCGA-EE-A29V-06 4 119948008 119948008 C T SYNPO2 Missense_Mutation p.P162S 0.29 tolerated(0.83) benign(0.005) TCGA-EE-A29V-06 4 122593728 122593728 G A ANXA5 Silent p.I195I 0.20 TCGA-EE-A29V-06 4 123230543 123230543 C T KIAA1109 Silent p.I3392I 0.23 TCGA-EE-A29V-06 4 124323681 124323681 C T SPRY1 Missense_Mutation p.S312F 0.36 deleterious(0.03) benign(0.125) TCGA-EE-A29V-06 4 126369957 126369957 G A FAT4 Missense_Mutation p.G2596R 0.22 probably_damaging(0.991) TCGA-EE-A29V-06 4 1332318 1332318 C T MAEA Silent p.S336S 0.26 TCGA-EE-A29V-06 4 134071348 134071348 C T PCDH10 Missense_Mutation p.S18F 0.36 deleterious(0.01) possibly_damaging(0.511) TCGA-EE-A29V-06 4 134073473 134073473 C T PCDH10 Silent p.S726S 0.27 TCGA-EE-A29V-06 4 146560724 146560724 C T MMAA Nonsense_Mutation p.R145* 0.29 TCGA-EE-A29V-06 4 148453693 148453693 G A EDNRA Missense_Mutation p.G195E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 4 152204438 152204438 G A PRSS48 Silent p.K217K 0.20 TCGA-EE-A29V-06 4 152204439 152204439 G A PRSS48 Splice_Site p.X217_splice 0.22 TCGA-EE-A29V-06 4 153896077 153896077 C T FHDC1 Missense_Mutation p.P545L 0.25 tolerated(0.36) benign(0) TCGA-EE-A29V-06 4 155467365 155467365 C T PLRG1 Missense_Mutation p.G105E 0.30 tolerated(0.06) possibly_damaging(0.846) TCGA-EE-A29V-06 4 156839358 156839358 C T TDO2 Missense_Mutation p.S345F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 4 164246624 164246624 C T NPY1R Missense_Mutation p.R329K 0.35 tolerated(1) benign(0.002) TCGA-EE-A29V-06 4 164393683 164393683 C T TKTL2 Missense_Mutation p.D402N 0.36 deleterious(0) possibly_damaging(0.851) TCGA-EE-A29V-06 4 166963230 166963230 G A TLL1 Missense_Mutation p.R438K 0.21 deleterious(0.02) possibly_damaging(0.733) TCGA-EE-A29V-06 4 169206650 169206650 C T DDX60 Splice_Site p.X447_splice 0.45 TCGA-EE-A29V-06 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.32 deleterious(0) probably_damaging(0.991) TCGA-EE-A29V-06 4 183601743 183601743 C T TENM3 Missense_Mutation p.R563C 0.28 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A29V-06 4 183694726 183694726 C T TENM3 Missense_Mutation p.S1665L 0.30 tolerated(0.09) benign(0.005) TCGA-EE-A29V-06 4 185687120 185687120 G T ACSL1 Silent p.V428V 0.30 TCGA-EE-A29V-06 4 186544450 186544450 C T SORBS2 Silent p.R807R 0.32 TCGA-EE-A29V-06 4 20599938 20599938 C T SLIT2 Silent p.D1204D 0.33 TCGA-EE-A29V-06 4 20611732 20611732 C T SLIT2 Silent p.I1263I 0.34 TCGA-EE-A29V-06 4 25398357 25398357 C T ANAPC4 Missense_Mutation p.P378L 0.28 tolerated(0.32) benign(0.338) TCGA-EE-A29V-06 4 3318983 3318983 G A RGS12 Silent p.E362E 0.27 TCGA-EE-A29V-06 4 39083653 39083653 G A KLHL5 Silent p.Q304Q 0.35 TCGA-EE-A29V-06 4 39439414 39439414 G A KLB Nonsense_Mutation p.W468* 0.34 TCGA-EE-A29V-06 4 40351209 40351209 G A CHRNA9 Missense_Mutation p.D226N 0.36 deleterious(0) possibly_damaging(0.897) TCGA-EE-A29V-06 4 42558049 42558049 G A ATP8A1 Missense_Mutation p.S450L 0.37 tolerated(0.32) benign(0.002) TCGA-EE-A29V-06 4 46307625 46307625 C T GABRA2 Silent p.L221L 0.31 TCGA-EE-A29V-06 4 46390745 46390745 C T GABRA2 Intron 0.34 TCGA-EE-A29V-06 4 52860601 52860601 G A LRRC66 Missense_Mutation p.P863S 0.46 tolerated(0.08) possibly_damaging(0.481) TCGA-EE-A29V-06 4 52946055 52946055 G A SPATA18 Missense_Mutation p.G442E 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 4 55139777 55139777 G A PDGFRA Missense_Mutation p.D480N 0.41 tolerated(0.11) benign(0.005) TCGA-EE-A29V-06 4 62897274 62897274 C T LPHN3 Silent p.F1111F 0.36 TCGA-EE-A29V-06 4 62935858 62935858 T C LPHN3 Silent p.S1214S 0.42 TCGA-EE-A29V-06 4 6611753 6611753 C T MAN2B2 Silent p.S745S 0.21 TCGA-EE-A29V-06 4 69972974 69972974 C T UGT2B7 Missense_Mutation p.L362F 0.32 deleterious(0.01) possibly_damaging(0.541) TCGA-EE-A29V-06 4 70074168 70074168 T G UGT2B11 Missense_Mutation p.E301D 0.28 tolerated(0.1) benign(0.001) TCGA-EE-A29V-06 4 74310740 74310740 C T AFP Silent p.T248T 0.42 TCGA-EE-A29V-06 4 75971446 75971446 G A PARM1 Missense_Mutation p.D308N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 4 77660467 77660467 G A SHROOM3 Missense_Mutation p.G381S 0.45 tolerated(0.09) possibly_damaging(0.884) TCGA-EE-A29V-06 4 77661507 77661507 G A SHROOM3 Silent p.G727G 0.24 TCGA-EE-A29V-06 4 77675821 77675821 C T SHROOM3 Silent p.T1395T 0.25 TCGA-EE-A29V-06 4 79443874 79443874 G A FRAS1 Missense_Mutation p.G3574R 0.29 probably_damaging(0.994) TCGA-EE-A29V-06 4 80246948 80246948 C T NAA11 Missense_Mutation p.M28I 0.38 deleterious(0.04) benign(0.067) TCGA-EE-A29V-06 4 80329289 80329289 G A GK2 Silent p.S22S 0.35 TCGA-EE-A29V-06 4 80952847 80952847 C T ANTXR2 Splice_Site p.X266_splice 0.27 TCGA-EE-A29V-06 4 8584315 8584315 G A GPR78 Silent p.K242K 0.30 TCGA-EE-A29V-06 4 87115524 87115524 C T MAPK10 Missense_Mutation p.E11K 0.27 tolerated_low_confidence(0.22) benign(0) TCGA-EE-A29V-06 4 88411474 88411474 C T SPARCL1 Silent p.G494G 0.32 TCGA-EE-A29V-06 4 89390350 89390350 G A HERC5 Missense_Mutation p.E393K 0.27 tolerated(0.07) benign(0.063) TCGA-EE-A29V-06 4 90171112 90171112 G A GPRIN3 Silent p.A50A 0.29 TCGA-EE-A29V-06 4 90647782 90647782 G A SNCA Silent p.A140A 0.29 TCGA-EE-A29V-06 4 90647783 90647783 G A SNCA Missense_Mutation p.A140V 0.30 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-EE-A29V-06 4 91701623 91701623 G A CCSER1 Intron 0.27 TCGA-EE-A29V-06 4 96762042 96762042 C T PDHA2 Silent p.I247I 0.41 TCGA-EE-A29V-06 5 114916925 114916925 G A TICAM2 Intron 0.52 TCGA-EE-A29V-06 5 1232888 1232888 C T SLC6A18 Silent p.S108S 0.24 TCGA-EE-A29V-06 5 137028034 137028034 G A KLHL3 Missense_Mutation p.R156C 0.64 deleterious(0) probably_damaging(0.987) TCGA-EE-A29V-06 5 13807809 13807809 C T DNAH5 Missense_Mutation p.G2593E 0.54 probably_damaging(0.982) TCGA-EE-A29V-06 5 140207808 140207808 C T PCDHA6 Silent p.F44F 0.46 TCGA-EE-A29V-06 5 140249597 140249597 C T PCDHA11 Silent p.V303V 0.58 TCGA-EE-A29V-06 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.56 tolerated_low_confidence(0.07) benign(0.002) TCGA-EE-A29V-06 5 140255750 140255750 C T PCDHA12 Silent p.T231T 0.57 TCGA-EE-A29V-06 5 140256181 140256181 C T PCDHA12 Missense_Mutation p.S375L 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.624) TCGA-EE-A29V-06 5 1403047 1403047 G A SLC6A3 Missense_Mutation p.S586F 0.44 deleterious(0.02) benign(0.024) TCGA-EE-A29V-06 5 140482336 140482336 C T PCDHB3 Silent p.F701F 0.61 TCGA-EE-A29V-06 5 140754002 140754002 C T PCDHGA6 Missense_Mutation p.P118S 0.52 tolerated_low_confidence(0.32) benign(0.005) TCGA-EE-A29V-06 5 140793642 140793642 A T PCDHGA10 Missense_Mutation p.K300N 0.56 deleterious_low_confidence(0.02) benign(0.041) TCGA-EE-A29V-06 5 147030090 147030090 C T JAKMIP2 Silent p.K216K 0.50 TCGA-EE-A29V-06 5 149574312 149574312 A C SLC6A7 Missense_Mutation p.M19L 0.55 tolerated(0.43) benign(0.003) TCGA-EE-A29V-06 5 153174180 153174180 G A GRIA1 Splice_Site p.X767_splice 0.55 TCGA-EE-A29V-06 5 167489216 167489216 G A TENM2 Silent p.K487K 0.38 TCGA-EE-A29V-06 5 167489217 167489217 G A TENM2 Missense_Mutation p.D488N 0.38 tolerated(0.29) benign(0.034) TCGA-EE-A29V-06 5 169494601 169494601 G A DOCK2 Missense_Mutation p.D1519N 0.66 deleterious(0.03) possibly_damaging(0.833) TCGA-EE-A29V-06 5 169693889 169693889 G A LCP2 Missense_Mutation p.A232V 0.51 deleterious(0.03) benign(0.009) TCGA-EE-A29V-06 5 170215659 170215659 C T GABRP Missense_Mutation p.L14F 0.49 deleterious(0.04) benign(0.248) TCGA-EE-A29V-06 5 176562207 176562207 G A NSD1 Missense_Mutation p.G35S 0.58 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A29V-06 5 180377111 180377111 T G BTNL8 Missense_Mutation p.V357G 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A29V-06 5 36976077 36976077 T C NIPBL Silent p.T356T 0.46 TCGA-EE-A29V-06 5 38370428 38370428 C T EGFLAM Silent p.I192I 0.74 TCGA-EE-A29V-06 5 38950766 38950766 G A RICTOR Missense_Mutation p.L1062F 0.49 deleterious(0.03) benign(0.06) TCGA-EE-A29V-06 5 64878967 64878967 G A PPWD1 Missense_Mutation p.E485K 0.50 tolerated(0.77) benign(0.021) TCGA-EE-A29V-06 5 67589197 67589197 A T PIK3R1 Silent p.P395P 0.53 TCGA-EE-A29V-06 5 70828250 70828250 C T BDP1 Missense_Mutation p.P1963L 0.36 tolerated(0.23) benign(0.023) TCGA-EE-A29V-06 5 89953728 89953728 G A GPR98 Missense_Mutation p.G1462E 0.39 probably_damaging(0.993) TCGA-EE-A29V-06 5 94230531 94230531 G A MCTP1 Silent p.V554V 0.67 TCGA-EE-A29V-06 5 94994287 94994287 A T SPATA9 3'UTR 0.60 TCGA-EE-A29V-06 5 95730586 95730586 C T PCSK1 Silent p.K622K 0.57 TCGA-EE-A29V-06 6 108042121 108042121 G A SCML4 Silent p.S253S 0.65 TCGA-EE-A29V-06 6 109770007 109770007 G A MICAL1 Missense_Mutation p.S531F 0.53 deleterious(0) benign(0.337) TCGA-EE-A29V-06 6 117248234 117248234 C T RFX6 Missense_Mutation p.P644S 0.57 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-EE-A29V-06 6 117737455 117737455 T C ROS1 Missense_Mutation p.N65S 0.52 tolerated(0.16) benign(0.014) TCGA-EE-A29V-06 6 123319199 123319199 G A CLVS2 Missense_Mutation p.D93N 0.49 deleterious(0.05) benign(0.081) TCGA-EE-A29V-06 6 124979392 124979392 G A NKAIN2 Missense_Mutation p.G112R 0.51 deleterious(0) probably_damaging(0.98) TCGA-EE-A29V-06 6 125614016 125614016 G A HDDC2 Missense_Mutation p.L117F 0.58 tolerated(0.1) benign(0.057) TCGA-EE-A29V-06 6 129802525 129802525 C T LAMA2 Missense_Mutation p.L2564F 0.61 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 6 130530700 130530700 G A SAMD3 Missense_Mutation p.S108F 0.51 tolerated_low_confidence(0.39) benign(0.006) TCGA-EE-A29V-06 6 132938531 132938531 A G TAAR2 Silent p.L272L 0.56 TCGA-EE-A29V-06 6 143091114 143091114 G A HIVEP2 Missense_Mutation p.P1588S 0.42 tolerated(0.69) benign(0.309) TCGA-EE-A29V-06 6 144269373 144269373 C T PLAGL1 5'UTR 0.36 TCGA-EE-A29V-06 6 151671352 151671352 C T AKAP12 Missense_Mutation p.P609L 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 6 15615601 15615601 C T DTNBP1 Missense_Mutation p.E129K 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 6 159653402 159653402 C T FNDC1 Missense_Mutation p.P620S 0.50 tolerated_low_confidence(0.75) unknown(0) TCGA-EE-A29V-06 6 161152886 161152886 C T PLG Silent p.F516F 0.57 TCGA-EE-A29V-06 6 161518132 161518132 C T MAP3K4 Missense_Mutation p.R1150C 0.53 deleterious(0) probably_damaging(0.995) TCGA-EE-A29V-06 6 17551751 17551751 C T CAP2 Silent p.Y422Y 0.71 TCGA-EE-A29V-06 6 25917290 25917290 G A SLC17A2 Silent p.L225L 0.69 TCGA-EE-A29V-06 6 2890648 2890648 G A SERPINB9 Nonsense_Mutation p.Q294* 0.23 TCGA-EE-A29V-06 6 29556669 29556669 T C OR2H2 3'UTR 0.33 TCGA-EE-A29V-06 6 29910668 29910668 G A HLA-A Missense_Mutation p.E70K 0.56 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-EE-A29V-06 6 30572209 30572209 C T PPP1R10 Silent p.R394R 0.72 TCGA-EE-A29V-06 6 30680248 30680248 G A MDC1 Missense_Mutation p.P491S 0.51 tolerated(0.1) probably_damaging(0.994) TCGA-EE-A29V-06 6 31597008 31597008 C T PRRC2A Missense_Mutation p.P618L 0.54 possibly_damaging(0.713) TCGA-EE-A29V-06 6 31597009 31597009 C T PRRC2A Silent p.P618P 0.54 TCGA-EE-A29V-06 6 31747242 31747242 G A VARS Silent p.S1120S 0.58 TCGA-EE-A29V-06 6 31995183 31995183 C T C4B Silent p.F921F 0.55 TCGA-EE-A29V-06 6 32810460 32810460 G T PSMB8 Silent p.A132A 0.58 TCGA-EE-A29V-06 6 32810461 32810461 G A PSMB8 Missense_Mutation p.A132V 0.61 deleterious(0) probably_damaging(0.989) TCGA-EE-A29V-06 6 350831 350831 G A DUSP22 Missense_Mutation p.G173E 0.21 tolerated_low_confidence(0.05) benign(0.182) TCGA-EE-A29V-06 6 44221507 44221507 C T HSP90AB1 3'UTR 0.62 TCGA-EE-A29V-06 6 44255329 44255329 G A TCTE1 Silent p.L78L 0.30 TCGA-EE-A29V-06 6 46660898 46660898 C T TDRD6 Missense_Mutation p.P1678L 0.57 deleterious(0.02) benign(0.12) TCGA-EE-A29V-06 6 47682264 47682264 C T GPR115 Missense_Mutation p.S428F 0.51 tolerated(0.34) probably_damaging(0.983) TCGA-EE-A29V-06 6 47846785 47846785 C T PTCHD4 Missense_Mutation p.D599N 0.40 tolerated(0.97) benign(0.01) TCGA-EE-A29V-06 6 52268165 52268165 C T PAQR8 Missense_Mutation p.R52C 0.42 tolerated(0.18) benign(0.224) TCGA-EE-A29V-06 6 54066921 54066921 C T MLIP Missense_Mutation p.R335C 0.76 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 6 56480971 56480971 C T DST Intron 0.49 TCGA-EE-A29V-06 6 69944926 69944926 C T BAI3 Silent p.I870I 0.49 TCGA-EE-A29V-06 6 7231372 7231372 C T RREB1 Silent p.L1014L 0.25 TCGA-EE-A29V-06 6 76350409 76350409 C T SENP6 Silent p.D156D 0.37 TCGA-EE-A29V-06 6 80223457 80223457 G A LCA5 Silent p.A64A 0.52 TCGA-EE-A29V-06 6 80223458 80223458 G A LCA5 Missense_Mutation p.A64V 0.51 tolerated(0.1) benign(0.041) TCGA-EE-A29V-06 6 84025120 84025120 C T ME1 Missense_Mutation p.D205N 0.60 deleterious(0.03) benign(0.294) TCGA-EE-A29V-06 6 84859352 84859352 G T KIAA1009 Missense_Mutation p.L1234I 0.67 tolerated(0.15) possibly_damaging(0.713) TCGA-EE-A29V-06 6 93964457 93964457 T G EPHA7 Missense_Mutation p.T814P 0.50 deleterious(0) possibly_damaging(0.743) TCGA-EE-A29V-06 7 100029261 100029261 C T MEPCE Silent p.P540P 0.19 TCGA-EE-A29V-06 7 100030695 100030695 C T MEPCE Missense_Mutation p.P609S 0.24 deleterious(0.04) possibly_damaging(0.857) TCGA-EE-A29V-06 7 100030696 100030696 C T MEPCE Missense_Mutation p.P609L 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A29V-06 7 100245114 100245114 C T ACTL6B Missense_Mutation p.E238K 0.30 tolerated(0.65) benign(0.006) TCGA-EE-A29V-06 7 100245115 100245115 C T ACTL6B Silent p.K237K 0.31 TCGA-EE-A29V-06 7 100416162 100416162 C T EPHB4 Missense_Mutation p.E468K 0.20 deleterious(0.01) possibly_damaging(0.793) TCGA-EE-A29V-06 7 101256766 101256766 C T MYL10 Missense_Mutation p.E224K 0.22 deleterious(0.02) possibly_damaging(0.645) TCGA-EE-A29V-06 7 102106642 102106642 C T LRWD1 Silent p.L119L 0.42 TCGA-EE-A29V-06 7 112423923 112423923 G A TMEM168 Missense_Mutation p.H320Y 0.30 tolerated(0.4) benign(0.201) TCGA-EE-A29V-06 7 1131498 1131498 G A GPER1 Missense_Mutation p.G45E 0.33 tolerated(1) benign(0.008) TCGA-EE-A29V-06 7 113518910 113518910 G A PPP1R3A Missense_Mutation p.A746V 0.24 deleterious(0.04) possibly_damaging(0.45) TCGA-EE-A29V-06 7 123257671 123257671 G A ASB15 Missense_Mutation p.G111R 0.30 deleterious(0) probably_damaging(0.972) TCGA-EE-A29V-06 7 123594421 123594421 A T SPAM1 Missense_Mutation p.N266I 0.18 deleterious(0.04) possibly_damaging(0.689) TCGA-EE-A29V-06 7 128490508 128490508 C T FLNC Missense_Mutation p.P1790L 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A29V-06 7 131883317 131883317 C T PLXNA4 Missense_Mutation p.D889N 0.43 deleterious(0) possibly_damaging(0.815) TCGA-EE-A29V-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.34 TCGA-EE-A29V-06 7 137790091 137790091 C T AKR1D1 Silent p.S165S 0.29 TCGA-EE-A29V-06 7 138406667 138406667 C T ATP6V0A4 Missense_Mutation p.G705E 0.32 tolerated(0.17) benign(0.006) TCGA-EE-A29V-06 7 138545892 138545892 G A KIAA1549 Missense_Mutation p.P1747L 0.26 deleterious(0) possibly_damaging(0.642) TCGA-EE-A29V-06 7 139529266 139529266 C T TBXAS1 Missense_Mutation p.A27V 0.32 tolerated(0.66) benign(0.009) TCGA-EE-A29V-06 7 139791834 139791834 G A KDM7A Missense_Mutation p.S834L 0.33 tolerated_low_confidence(0.05) benign(0.169) TCGA-EE-A29V-06 7 141631613 141631613 T C CLEC5A Missense_Mutation p.D120G 0.32 tolerated(0.05) benign(0.106) TCGA-EE-A29V-06 7 141750661 141750661 G A MGAM Silent p.L934L 0.29 TCGA-EE-A29V-06 7 141762467 141762467 C T MGAM Missense_Mutation p.P1408S 0.34 tolerated(0.11) benign(0.247) TCGA-EE-A29V-06 7 142459670 142459670 G A PRSS1 Silent p.E82E 0.06 TCGA-EE-A29V-06 7 142723527 142723527 C T OR9A2 Silent p.R231R 0.35 TCGA-EE-A29V-06 7 143029561 143029561 T A CLCN1 Missense_Mutation p.F406I 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29V-06 7 143029876 143029876 G A CLCN1 Silent p.A437A 0.43 TCGA-EE-A29V-06 7 143421595 143421595 C T FAM115C Silent p.F770F 0.25 TCGA-EE-A29V-06 7 143454058 143454058 C T CTAGE6 Missense_Mutation p.E232K 0.25 deleterious(0.02) benign(0.222) TCGA-EE-A29V-06 7 143573477 143573477 G A FAM115A Silent p.P75P 0.31 TCGA-EE-A29V-06 7 143573478 143573478 G A FAM115A Missense_Mutation p.P75L 0.31 tolerated(0.12) benign(0.008) TCGA-EE-A29V-06 7 143807181 143807181 G A OR2A2 Missense_Mutation p.G169E 0.42 deleterious(0.01) possibly_damaging(0.854) TCGA-EE-A29V-06 7 14613939 14613939 G A DGKB Silent p.I557I 0.37 TCGA-EE-A29V-06 7 14620486 14620486 C T DGKB Splice_Site p.X538_splice 0.24 TCGA-EE-A29V-06 7 14620487 14620487 C T DGKB Missense_Mutation p.G538S 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 7 146829419 146829419 G A CNTNAP2 Missense_Mutation p.R389Q 0.37 tolerated(0.45) benign(0.018) TCGA-EE-A29V-06 7 147844632 147844632 G A CNTNAP2 Silent p.E868E 0.39 TCGA-EE-A29V-06 7 148801972 148801972 G A ZNF425 Nonsense_Mutation p.Q331* 0.29 TCGA-EE-A29V-06 7 150554030 150554030 G C AOC1 Missense_Mutation p.A158P 0.34 deleterious(0.04) possibly_damaging(0.814) TCGA-EE-A29V-06 7 15470631 15470631 C T AGMO Nonsense_Mutation p.W171* 0.23 TCGA-EE-A29V-06 7 154876129 154876129 C T HTR5A Silent p.L336L 0.29 TCGA-EE-A29V-06 7 18688097 18688097 C T HDAC9 Missense_Mutation p.P420S 0.34 deleterious(0.04) benign(0.396) TCGA-EE-A29V-06 7 20199458 20199458 C T MACC1 Missense_Mutation p.E176K 0.30 deleterious(0) possibly_damaging(0.627) TCGA-EE-A29V-06 7 21781647 21781647 C T DNAH11 Missense_Mutation p.P2680S 0.24 benign(0.274) TCGA-EE-A29V-06 7 2415157 2415157 C T EIF3B Missense_Mutation p.H675Y 0.28 tolerated(0.06) possibly_damaging(0.575) TCGA-EE-A29V-06 7 2472882 2472882 C T CHST12 Missense_Mutation p.P203L 0.52 deleterious(0) probably_damaging(0.997) TCGA-EE-A29V-06 7 29519972 29519972 G A CHN2 Silent p.K218K 0.31 TCGA-EE-A29V-06 7 2952950 2952950 C T CARD11 Missense_Mutation p.G997D 0.27 tolerated(0.13) probably_damaging(0.912) TCGA-EE-A29V-06 7 2952951 2952951 C T CARD11 Missense_Mutation p.G997S 0.26 tolerated(0.57) possibly_damaging(0.78) TCGA-EE-A29V-06 7 2954959 2954959 C T CARD11 Silent p.E917E 0.27 TCGA-EE-A29V-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.41 tolerated(0.19) benign(0.198) TCGA-EE-A29V-06 7 31378576 31378576 C T NEUROD6 Missense_Mutation p.E103K 0.28 deleterious(0) possibly_damaging(0.881) TCGA-EE-A29V-06 7 31867980 31867980 C T PDE1C Missense_Mutation p.R464K 0.33 tolerated(1) benign(0.013) TCGA-EE-A29V-06 7 36657942 36657942 G A AOAH Missense_Mutation p.P238S 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A29V-06 7 36726344 36726344 C T AOAH Silent p.T61T 0.34 TCGA-EE-A29V-06 7 37780295 37780295 C T GPR141 Silent p.Y100Y 0.39 TCGA-EE-A29V-06 7 38431555 38431555 C T AMPH Missense_Mutation p.E558K 0.27 tolerated(0.07) benign(0.069) TCGA-EE-A29V-06 7 39379484 39379484 A G POU6F2 Missense_Mutation p.Q252R 0.35 tolerated_low_confidence(0.44) unknown(0) TCGA-EE-A29V-06 7 39446295 39446295 C T POU6F2 Missense_Mutation p.L328F 0.35 deleterious(0) unknown(0) TCGA-EE-A29V-06 7 45743273 45743273 C T ADCY1 Silent p.I882I 0.31 TCGA-EE-A29V-06 7 47969013 47969013 G A PKD1L1 Missense_Mutation p.A283V 0.34 tolerated(1) benign(0.038) TCGA-EE-A29V-06 7 5105064 5105064 C T RBAK Silent p.V659V 0.35 TCGA-EE-A29V-06 7 75221720 75221720 G A HIP1 Silent p.F99F 0.50 TCGA-EE-A29V-06 7 80276161 80276161 G A CD36 Silent p.Q35Q 0.22 TCGA-EE-A29V-06 7 82474693 82474693 C T PCLO Missense_Mutation p.G4647E 0.31 unknown(0) TCGA-EE-A29V-06 7 82474694 82474694 C T PCLO Missense_Mutation p.G4647R 0.31 unknown(0) TCGA-EE-A29V-06 7 82545811 82545811 G A PCLO Missense_Mutation p.R3831C 0.38 unknown(0) TCGA-EE-A29V-06 7 82579779 82579779 G A PCLO Silent p.T3375T 0.38 TCGA-EE-A29V-06 7 82584294 82584294 T A PCLO Missense_Mutation p.K1992M 0.32 unknown(0) TCGA-EE-A29V-06 7 83119493 83119493 G A SEMA3E Silent p.F71F 0.33 TCGA-EE-A29V-06 7 87759715 87759715 C T ADAM22 Missense_Mutation p.R256W 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.31 tolerated(0.07) benign(0.032) TCGA-EE-A29V-06 7 89791250 89791250 C T STEAP1 Missense_Mutation p.A207V 0.25 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A29V-06 7 927100 927100 C T GET4 Missense_Mutation p.S137F 0.22 deleterious(0) benign(0.396) TCGA-EE-A29V-06 7 92730882 92730882 G A SAMD9 Missense_Mutation p.S1510F 0.17 tolerated(0.13) benign(0.004) TCGA-EE-A29V-06 7 95820540 95820540 G A SLC25A13 Missense_Mutation p.S212F 0.32 deleterious(0.01) possibly_damaging(0.635) TCGA-EE-A29V-06 7 98592250 98592250 C T TRRAP Missense_Mutation p.S3349F 0.30 benign(0.017) TCGA-EE-A29V-06 7 98592251 98592251 C T TRRAP Silent p.S3349S 0.31 TCGA-EE-A29V-06 7 99264624 99264624 C T CYP3A5 Missense_Mutation p.R128K 0.37 deleterious(0.03) benign(0.339) TCGA-EE-A29V-06 7 99799849 99799849 G A STAG3 Missense_Mutation p.G817R 0.34 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A29V-06 8 10465899 10465899 T C RP1L1 Silent p.S1903S 0.59 TCGA-EE-A29V-06 8 10467030 10467030 C T RP1L1 Silent p.T1526T 0.58 TCGA-EE-A29V-06 8 110598373 110598373 C T SYBU Missense_Mutation p.S149N 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 8 113358332 113358332 C T CSMD3 Missense_Mutation p.G2146S 0.64 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A29V-06 8 119391936 119391936 C T SAMD12 Missense_Mutation p.R109Q 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A29V-06 8 125047600 125047600 G A FER1L6 Missense_Mutation p.S790N 0.25 deleterious(0.05) benign(0.003) TCGA-EE-A29V-06 8 128428624 128428624 G A POU5F1B Silent p.L171L 0.31 TCGA-EE-A29V-06 8 139144922 139144922 C T FAM135B Missense_Mutation p.G1379S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 8 139160883 139160883 C T FAM135B Missense_Mutation p.G1110R 0.29 deleterious(0) possibly_damaging(0.796) TCGA-EE-A29V-06 8 139715590 139715590 C T COL22A1 Missense_Mutation p.G840S 0.22 probably_damaging(1) TCGA-EE-A29V-06 8 141595379 141595379 G A AGO2 Silent p.I18I 0.60 TCGA-EE-A29V-06 8 143602235 143602235 C T BAI1 Silent p.I991I 0.37 TCGA-EE-A29V-06 8 144898646 144898646 G A PUF60 3'UTR 0.33 TCGA-EE-A29V-06 8 144945157 144945157 C T EPPK1 Silent p.L755L 0.21 TCGA-EE-A29V-06 8 144994766 144994766 G A PLEC Missense_Mutation p.R3212W 0.14 probably_damaging(0.993) TCGA-EE-A29V-06 8 16850656 16850656 A G FGF20 Silent p.F187F 0.54 TCGA-EE-A29V-06 8 17883059 17883059 C T PCM1 Silent p.L1981L 0.62 TCGA-EE-A29V-06 8 21957256 21957256 C T FAM160B2 Missense_Mutation p.A398V 0.33 tolerated(0.27) benign(0.084) TCGA-EE-A29V-06 8 24209551 24209551 C G ADAM28 Missense_Mutation p.P744A 0.57 deleterious(0.02) benign(0.156) TCGA-EE-A29V-06 8 30938511 30938511 C T WRN Missense_Mutation p.S323L 0.61 tolerated(0.27) benign(0.005) TCGA-EE-A29V-06 8 38133953 38133953 C T WHSC1L1 Silent p.K1311K 0.73 TCGA-EE-A29V-06 8 40011065 40011065 G A C8orf4 Missense_Mutation p.R5Q 0.64 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A29V-06 8 53044647 53044647 C T ST18 Missense_Mutation p.R846K 0.18 deleterious(0) possibly_damaging(0.763) TCGA-EE-A29V-06 8 53076651 53076651 C T ST18 Splice_Site p.X432_splice 0.16 TCGA-EE-A29V-06 8 54142013 54142013 G A OPRK1 Silent p.L329L 0.19 TCGA-EE-A29V-06 8 54142187 54142187 C T OPRK1 Silent p.R271R 0.26 TCGA-EE-A29V-06 8 55538107 55538107 G A RP1 Silent p.Q555Q 0.17 TCGA-EE-A29V-06 8 55540583 55540583 A C RP1 Missense_Mutation p.K1381Q 0.32 tolerated(0.15) possibly_damaging(0.489) TCGA-EE-A29V-06 8 56436480 56436480 C T XKR4 Silent p.I549I 0.24 TCGA-EE-A29V-06 8 61735300 61735300 C T CHD7 Missense_Mutation p.P1066S 0.38 benign(0.03) TCGA-EE-A29V-06 8 65527784 65527784 G A CYP7B1 Missense_Mutation p.H286Y 0.18 deleterious(0.01) benign(0.284) TCGA-EE-A29V-06 8 67039668 67039668 C T TRIM55 Silent p.F55F 0.16 TCGA-EE-A29V-06 8 73850049 73850049 G A KCNB2 Missense_Mutation p.G820E 0.16 tolerated_low_confidence(0.42) benign(0.04) TCGA-EE-A29V-06 8 75227679 75227679 G A JPH1 Missense_Mutation p.P186S 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A29V-06 8 77618596 77618596 C T ZFHX4 Missense_Mutation p.P758L 0.18 possibly_damaging(0.859) TCGA-EE-A29V-06 8 77768148 77768148 C G ZFHX4 Missense_Mutation p.I2997M 0.21 probably_damaging(0.984) TCGA-EE-A29V-06 8 82606445 82606445 A G SLC10A5 Missense_Mutation p.Y255H 0.75 tolerated(0.37) benign(0.105) TCGA-EE-A29V-06 8 87076519 87076519 G A PSKH2 Missense_Mutation p.A176V 0.38 tolerated(0.16) benign(0.151) TCGA-EE-A29V-06 8 88885999 88885999 G A DCAF4L2 Silent p.S67S 0.27 TCGA-EE-A29V-06 8 91072457 91072457 C T CALB1 Missense_Mutation p.G244R 0.25 tolerated(0.05) probably_damaging(0.97) TCGA-EE-A29V-06 8 94798460 94798460 C T TMEM67 Missense_Mutation p.S433F 0.28 tolerated(0.07) benign(0.262) TCGA-EE-A29V-06 8 95264276 95264276 A C GEM Nonsense_Mutation p.L195* 0.67 TCGA-EE-A29V-06 8 95802125 95802125 C T DPY19L4 Missense_Mutation p.S720F 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29V-06 8 99441691 99441691 G C KCNS2 3'UTR 1.00 TCGA-EE-A29V-06 9 102590451 102590451 G A NR4A3 Missense_Mutation p.G54S 0.35 tolerated(0.63) benign(0.023) TCGA-EE-A29V-06 9 104238586 104238586 C T TMEM246 Silent p.L263L 0.42 TCGA-EE-A29V-06 9 105767357 105767357 G A CYLC2 Silent p.E148E 0.46 TCGA-EE-A29V-06 9 111673345 111673345 C T IKBKAP Silent p.K435K 0.39 TCGA-EE-A29V-06 9 113703904 113703904 T C LPAR1 Missense_Mutation p.N197S 0.33 tolerated(0.58) benign(0.012) TCGA-EE-A29V-06 9 116224415 116224415 A T RGS3 Nonsense_Mutation p.R117* 0.47 TCGA-EE-A29V-06 9 116999285 116999285 C T COL27A1 Missense_Mutation p.P882S 0.28 unknown(0) TCGA-EE-A29V-06 9 118982379 118982379 C T PAPPA Silent p.F694F 0.28 TCGA-EE-A29V-06 9 122011343 122011343 G A BRINP1 Nonsense_Mutation p.Q102* 0.42 TCGA-EE-A29V-06 9 124794087 124794087 G A TTLL11 Missense_Mutation p.T293I 0.28 tolerated(0.74) benign(0.002) TCGA-EE-A29V-06 9 125377779 125377779 C T OR1Q1 Missense_Mutation p.L255F 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 9 125437507 125437507 C T OR1L3 Silent p.I33I 0.29 TCGA-EE-A29V-06 9 125681566 125681566 G A ZBTB26 Silent p.P216P 0.23 TCGA-EE-A29V-06 9 126554907 126554907 G A DENND1A Missense_Mutation p.P31S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 9 128692021 128692022 AT - PBX3 Frame_Shift_Del p.M202Gfs*9 0.29 TCGA-EE-A29V-06 9 130167182 130167182 C T SLC2A8 Silent p.A354A 0.39 TCGA-EE-A29V-06 9 130206352 130206352 G A ZNF79 Missense_Mutation p.E125K 0.37 tolerated(0.37) benign(0.001) TCGA-EE-A29V-06 9 130494605 130494605 G A TOR2A Intron 0.31 TCGA-EE-A29V-06 9 130710456 130710456 G A FAM102A Silent p.S170S 0.30 TCGA-EE-A29V-06 9 130710457 130710457 G A FAM102A Missense_Mutation p.S170F 0.33 deleterious(0.04) benign(0.352) TCGA-EE-A29V-06 9 131151621 131151621 C T URM1 Silent p.A90A 0.28 TCGA-EE-A29V-06 9 13119586 13119586 C G MPDZ Missense_Mutation p.R1765T 0.54 deleterious(0.05) possibly_damaging(0.875) TCGA-EE-A29V-06 9 13119590 13119590 C T MPDZ Missense_Mutation p.G1764R 0.54 deleterious(0.05) probably_damaging(0.96) TCGA-EE-A29V-06 9 13150678 13150678 G A MPDZ Silent p.L1154L 0.42 TCGA-EE-A29V-06 9 132377835 132377835 G A C9orf50 Missense_Mutation p.P270S 0.27 deleterious(0) benign(0.065) TCGA-EE-A29V-06 9 133543581 133543581 G A PRDM12 Missense_Mutation p.D151N 0.32 deleterious(0) probably_damaging(0.986) TCGA-EE-A29V-06 9 135919197 135919197 C T GTF3C5 Silent p.L152L 0.29 TCGA-EE-A29V-06 9 136321696 136321696 C T ADAMTS13 Silent p.T1249T 0.28 TCGA-EE-A29V-06 9 136401786 136401786 G A ADAMTSL2 5'UTR 0.37 TCGA-EE-A29V-06 9 139743825 139743825 C T PHPT1 5'UTR 0.41 TCGA-EE-A29V-06 9 139745368 139745368 C T PHPT1 3'UTR 0.33 TCGA-EE-A29V-06 9 19786753 19786753 G A SLC24A2 Nonsense_Mutation p.R38* 0.48 TCGA-EE-A29V-06 9 20740333 20740333 C T FOCAD Missense_Mutation p.T129I 0.62 tolerated(0.07) possibly_damaging(0.588) TCGA-EE-A29V-06 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.52 TCGA-EE-A29V-06 9 21974680 21974680 G A CDKN2A Silent p.I49I 0.52 TCGA-EE-A29V-06 9 36170445 36170445 C T CCIN Missense_Mutation p.R316W 0.61 deleterious(0) probably_damaging(0.956) TCGA-EE-A29V-06 9 40716266 40716266 A T FAM74A3 RNA 0.15 TCGA-EE-A29V-06 9 71861675 71861675 A T TJP2 Missense_Mutation p.Q910L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 9 72840934 72840934 G A MAMDC2 Missense_Mutation p.E683K 0.19 deleterious(0.02) benign(0.016) TCGA-EE-A29V-06 9 73150892 73150892 T C TRPM3 Missense_Mutation p.S1701G 0.25 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-EE-A29V-06 9 73152011 73152011 G A TRPM3 Missense_Mutation p.P1328S 0.21 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-EE-A29V-06 9 79002225 79002225 G A RFK 3'UTR 0.29 TCGA-EE-A29V-06 9 79117280 79117280 C T GCNT1 5'UTR 0.37 TCGA-EE-A29V-06 9 80881427 80881427 C T CEP78 Missense_Mutation p.P640S 0.34 deleterious_low_confidence(0.02) benign(0.014) TCGA-EE-A29V-06 9 8375969 8375969 G A PTPRD Missense_Mutation p.P1543L 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A29V-06 9 84606346 84606346 T C SPATA31D1 Silent p.L321L 0.26 TCGA-EE-A29V-06 9 86383826 86383826 A G GKAP1 Silent p.D215D 0.31 TCGA-EE-A29V-06 9 91616748 91616748 C T S1PR3 Silent p.I211I 0.39 TCGA-EE-A29V-06 9 95285032 95285032 C T ECM2 Silent p.R39R 0.43 TCGA-EE-A29V-06 9 98011599 98011599 C T FANCC 5'UTR 0.25 TCGA-EE-A29V-06 X 100105197 100105197 C T NOX1 Missense_Mutation p.G359E 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 X 100808374 100808374 C T ARMCX1 Missense_Mutation p.P154L 0.71 deleterious(0.01) benign(0.136) TCGA-EE-A29V-06 X 101396323 101396323 C T TCEAL6 5'UTR 0.62 TCGA-EE-A29V-06 X 102338552 102338552 G A NXF3 Silent p.P140P 0.71 TCGA-EE-A29V-06 X 105137869 105137869 G A NRK Silent p.V141V 0.76 TCGA-EE-A29V-06 X 105278308 105278308 A C SERPINA7 Missense_Mutation p.L321W 0.64 deleterious(0.02) possibly_damaging(0.862) TCGA-EE-A29V-06 X 105450057 105450057 A G MUM1L1 Missense_Mutation p.K211R 0.86 tolerated(0.11) possibly_damaging(0.536) TCGA-EE-A29V-06 X 105450194 105450194 G A MUM1L1 Missense_Mutation p.E257K 0.67 deleterious(0.04) possibly_damaging(0.802) TCGA-EE-A29V-06 X 107979390 107979390 G A IRS4 Missense_Mutation p.S62F 0.78 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-EE-A29V-06 X 110574251 110574251 C T DCX Missense_Mutation p.G357E 0.72 deleterious(0.01) benign(0.148) TCGA-EE-A29V-06 X 112024185 112024185 T A AMOT Missense_Mutation p.H801L 0.71 unknown(0) TCGA-EE-A29V-06 X 118221261 118221261 G A KIAA1210 Missense_Mutation p.S1311F 0.64 tolerated(0.14) probably_damaging(0.944) TCGA-EE-A29V-06 X 122598946 122598946 T A GRIA3 Silent p.P769P 0.77 TCGA-EE-A29V-06 X 12906870 12906870 G A TLR7 3'UTR 0.82 TCGA-EE-A29V-06 X 129147484 129147484 C T BCORL1 Missense_Mutation p.P246S 0.77 unknown(0) TCGA-EE-A29V-06 X 130217842 130217842 G A ARHGAP36 Missense_Mutation p.G152R 0.67 tolerated(0.42) benign(0.32) TCGA-EE-A29V-06 X 130415851 130415851 G A IGSF1 Silent p.T438T 0.70 TCGA-EE-A29V-06 X 130416704 130416704 G A IGSF1 Silent p.F320F 0.70 TCGA-EE-A29V-06 X 13061897 13061897 C T FAM9C Silent p.K4K 0.70 TCGA-EE-A29V-06 X 13337352 13337352 T C ATXN3L Silent p.E234E 0.70 TCGA-EE-A29V-06 X 133675433 133675433 C T MIR542 RNA 0.54 TCGA-EE-A29V-06 X 138644239 138644239 G A F9 3'UTR 0.78 TCGA-EE-A29V-06 X 140994681 140994681 T G MAGEC1 Missense_Mutation p.S497R 0.67 deleterious_low_confidence(0) benign(0.307) TCGA-EE-A29V-06 X 1428602 1428602 A C CSF2RA 3'UTR 0.33 TCGA-EE-A29V-06 X 153134070 153134070 G A L1CAM Silent p.L498L 0.77 TCGA-EE-A29V-06 X 153134071 153134071 G A L1CAM Silent p.C497C 0.80 TCGA-EE-A29V-06 X 153880851 153880851 G A CTAG2 Silent p.I108I 0.77 TCGA-EE-A29V-06 X 153995642 153995642 C T DKC1 Missense_Mutation p.P209S 0.74 tolerated(0.18) benign(0.101) TCGA-EE-A29V-06 X 154348417 154348417 C T BRCC3 Silent p.L315L 0.75 TCGA-EE-A29V-06 X 18963270 18963270 C T PHKA2 Missense_Mutation p.G182R 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A29V-06 X 19380929 19380929 C T MAP3K15 Silent p.Q1202Q 0.54 TCGA-EE-A29V-06 X 19713797 19713797 G A SH3KBP1 Silent p.F151F 0.68 TCGA-EE-A29V-06 X 23398131 23398131 G A PTCHD1 Missense_Mutation p.E259K 0.80 tolerated(0.73) benign(0.061) TCGA-EE-A29V-06 X 3261829 3261829 G A MXRA5 Silent p.L16L 0.71 TCGA-EE-A29V-06 X 34148540 34148540 C T FAM47A Missense_Mutation p.G619E 0.70 deleterious(0) probably_damaging(0.998) TCGA-EE-A29V-06 X 34961360 34961360 G A FAM47B Missense_Mutation p.G138R 0.80 deleterious(0.04) possibly_damaging(0.749) TCGA-EE-A29V-06 X 48650336 48650336 G A GATA1 Silent p.G102G 0.76 TCGA-EE-A29V-06 X 50051652 50051652 G A CCNB3 Silent p.K161K 0.83 TCGA-EE-A29V-06 X 50127723 50127723 C T DGKK RNA 0.76 TCGA-EE-A29V-06 X 55103945 55103945 G A PAGE2B Missense_Mutation p.V103M 0.64 tolerated(1) benign(0.158) TCGA-EE-A29V-06 X 69774522 69774522 T C TEX11 Missense_Mutation p.K772E 0.62 deleterious(0.05) benign(0.149) TCGA-EE-A29V-06 X 70073179 70073179 C T TEX11 Splice_Site p.X124_splice 0.89 TCGA-EE-A29V-06 X 70683687 70683687 G A TAF1 Missense_Mutation p.E1825K 0.93 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A29V-06 X 70781708 70781708 C T OGT Silent p.G645G 0.67 TCGA-EE-A29V-06 X 70817802 70817802 C T ACRC Missense_Mutation p.S75F 0.27 possibly_damaging(0.831) TCGA-EE-A29V-06 X 70817803 70817803 C T ACRC Silent p.S75S 0.27 TCGA-EE-A29V-06 X 77913464 77913464 C T ZCCHC5 Missense_Mutation p.E152K 0.67 tolerated(0.38) benign(0.007) TCGA-EE-A29V-06 X 78010800 78010800 G A LPAR4 Missense_Mutation p.R145Q 0.51 deleterious(0.03) benign(0.168) TCGA-EE-A29V-06 X 83128012 83128012 C T CYLC1 Missense_Mutation p.P99L 0.38 tolerated(0.07) probably_damaging(0.991) TCGA-EE-A29V-06 Y 22923205 22923205 C T RPS4Y2 Missense_Mutation p.R100C 0.54 tolerated(0.13) benign(0.338) TCGA-EE-A29V-06 Y 4925360 4925360 G A PCDH11Y Missense_Mutation p.D166N 0.93 deleterious(0) probably_damaging(0.999) TCGA-EE-A29W-06 10 127412503 127412503 C T EDRF1 Nonsense_Mutation p.Q170* 0.59 TCGA-EE-A29W-06 10 12858327 12858327 G A CAMK1D Nonsense_Mutation p.W278* 0.61 TCGA-EE-A29W-06 10 29812856 29812856 G A SVIL Missense_Mutation p.T896I 0.61 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A29W-06 10 62645910 62645910 G A RHOBTB1 Missense_Mutation p.A512V 0.12 deleterious(0) possibly_damaging(0.805) TCGA-EE-A29W-06 10 88445448 88445448 C T LDB3 Intron 0.11 TCGA-EE-A29W-06 10 90582732 90582732 G A ANKRD22 Missense_Mutation p.S181F 0.19 tolerated(0.71) benign(0.009) TCGA-EE-A29W-06 11 101833837 101833837 G A KIAA1377 Missense_Mutation p.E691K 0.42 tolerated(0.06) benign(0.39) TCGA-EE-A29W-06 11 113802112 113802112 G A HTR3B Missense_Mutation p.E74K 0.29 tolerated(1) benign(0.257) TCGA-EE-A29W-06 11 120300219 120300219 G A ARHGEF12 Missense_Mutation p.R219Q 0.42 tolerated(0.35) benign(0.002) TCGA-EE-A29W-06 11 1968555 1968555 C T MRPL23 5'UTR 0.67 TCGA-EE-A29W-06 11 4566516 4566516 C T OR52M1 Silent p.P32P 0.12 TCGA-EE-A29W-06 11 58604592 58604592 C T GLYATL2 Silent p.Q124Q 0.43 TCGA-EE-A29W-06 11 6007148 6007148 G A OR52L1 3'UTR 0.25 TCGA-EE-A29W-06 11 60233627 60233627 C A MS4A1 Missense_Mutation p.F190L 0.16 tolerated(0.3) probably_damaging(0.942) TCGA-EE-A29W-06 12 123489978 123489978 G T PITPNM2 Missense_Mutation p.S254Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A29W-06 12 32896297 32896297 G - DNM1L Frame_Shift_Del p.G722Efs*26 0.21 TCGA-EE-A29W-06 12 6909590 6909590 C T CD4 Missense_Mutation p.S56F 0.28 tolerated(0.16) probably_damaging(0.963) TCGA-EE-A29W-06 12 83289710 83289710 G A TMTC2 Silent p.S256S 0.42 TCGA-EE-A29W-06 14 21215878 21215878 G A EDDM3A Missense_Mutation p.E47K 0.39 tolerated(0.85) benign(0.028) TCGA-EE-A29W-06 14 50713919 50713919 C T L2HGDH Missense_Mutation p.E417K 0.30 deleterious(0.03) benign(0.392) TCGA-EE-A29W-06 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.38 TCGA-EE-A29W-06 15 44211676 44211676 G A FRMD5 Silent p.L104L 0.55 TCGA-EE-A29W-06 15 52901077 52901077 G A FAM214A Silent p.S678S 0.34 TCGA-EE-A29W-06 15 85400485 85400485 C T ALPK3 Missense_Mutation p.P1041L 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A29W-06 16 1412536 1412537 - T GNPTG Splice_Site p.X203_splice 0.45 TCGA-EE-A29W-06 16 31144273 31144273 C T PRSS8 Missense_Mutation p.E90K 0.57 tolerated(0.35) possibly_damaging(0.548) TCGA-EE-A29W-06 16 3188500 3188500 C T ZNF213 Missense_Mutation p.R161W 0.53 tolerated(0.15) benign(0.002) TCGA-EE-A29W-06 16 47722962 47722962 C T PHKB Missense_Mutation p.H881Y 0.35 tolerated(0.1) benign(0.397) TCGA-EE-A29W-06 16 77225452 77225452 C T MON1B Missense_Mutation p.P24S 0.25 tolerated_low_confidence(0.23) benign(0.002) TCGA-EE-A29W-06 17 2995776 2995776 C T OR1D2 Missense_Mutation p.R172Q 0.24 tolerated(0.13) benign(0.023) TCGA-EE-A29W-06 17 56620976 56620976 C T C17orf47 Missense_Mutation p.R191H 0.23 deleterious(0.04) probably_damaging(0.923) TCGA-EE-A29W-06 17 74944837 74944837 G A MGAT5B Missense_Mutation p.G775S 0.35 tolerated(0.08) probably_damaging(1) TCGA-EE-A29W-06 17 79226242 79226242 G A SLC38A10 Silent p.A566A 0.42 TCGA-EE-A29W-06 18 31599485 31599485 C T NOL4 Missense_Mutation p.E285K 0.12 tolerated(0.06) benign(0.423) TCGA-EE-A29W-06 18 56585630 56585630 T G ZNF532 Missense_Mutation p.H37Q 0.22 tolerated(0.45) benign(0.001) TCGA-EE-A29W-06 18 61328390 61328390 T A SERPINB3 Nonsense_Mutation p.K21* 0.13 TCGA-EE-A29W-06 18 65180318 65180318 G T DSEL Missense_Mutation p.Q520K 0.19 tolerated(0.32) benign(0.331) TCGA-EE-A29W-06 19 35757850 35757850 C T LSR Missense_Mutation p.P423L 0.28 tolerated(0.37) benign(0.008) TCGA-EE-A29W-06 19 43358124 43358124 C T PSG10P RNA 0.44 TCGA-EE-A29W-06 19 47192935 47192935 G A PRKD2 Silent p.I610I 0.45 TCGA-EE-A29W-06 1 161693304 161693304 T G FCRLB Missense_Mutation p.L67R 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A29W-06 1 198685933 198685933 A T PTPRC Missense_Mutation p.S472C 0.43 deleterious(0.04) benign(0.246) TCGA-EE-A29W-06 1 200635682 200635682 G A DDX59 Missense_Mutation p.P63S 0.18 tolerated_low_confidence(0.18) benign(0.004) TCGA-EE-A29W-06 1 207646442 207646442 T C CR2 Silent p.S632S 0.23 TCGA-EE-A29W-06 1 2938344 2938344 C A ACTRT2 Silent p.R32R 0.12 TCGA-EE-A29W-06 1 38082336 38082336 C T RSPO1 Missense_Mutation p.G36R 0.42 deleterious(0.04) possibly_damaging(0.514) TCGA-EE-A29W-06 1 57425769 57425769 A G C8B Missense_Mutation p.V58A 0.58 tolerated(0.76) benign(0.012) TCGA-EE-A29W-06 1 59042177 59042177 C T TACSTD2 Missense_Mutation p.D218N 0.29 deleterious(0.03) possibly_damaging(0.847) TCGA-EE-A29W-06 20 17614161 17614161 G A RRBP1 Missense_Mutation p.R419W 0.12 deleterious(0) possibly_damaging(0.835) TCGA-EE-A29W-06 20 3128887 3128887 G A FASTKD5 Missense_Mutation p.S277F 0.51 deleterious(0) possibly_damaging(0.838) TCGA-EE-A29W-06 20 58476769 58476769 G A SYCP2 Missense_Mutation p.S377L 0.41 tolerated(0.41) probably_damaging(0.941) TCGA-EE-A29W-06 20 62192794 62192794 G A HELZ2 Missense_Mutation p.R2288W 0.51 deleterious(0.01) benign(0.212) TCGA-EE-A29W-06 22 21990800 21990800 C T CCDC116 Missense_Mutation p.S428F 0.52 deleterious(0) probably_damaging(0.988) TCGA-EE-A29W-06 22 25264413 25264413 G A SGSM1 Silent p.K355K 0.23 TCGA-EE-A29W-06 22 35782755 35782755 C T HMOX1 Silent p.F74F 0.30 TCGA-EE-A29W-06 2 169995204 169995204 G A LRP2 Silent p.L4467L 0.32 TCGA-EE-A29W-06 2 170019096 170019096 G A LRP2 Missense_Mutation p.P3925S 0.33 benign(0.006) TCGA-EE-A29W-06 2 187516797 187516797 A C ITGAV Missense_Mutation p.T496P 0.33 deleterious(0.01) benign(0.073) TCGA-EE-A29W-06 2 198950307 198950307 G A PLCL1 Missense_Mutation p.G689E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29W-06 2 237074899 237074899 G A GBX2 Silent p.S235S 0.15 TCGA-EE-A29W-06 2 27280274 27280274 C T AGBL5 Missense_Mutation p.P547S 0.60 deleterious(0.04) benign(0.393) TCGA-EE-A29W-06 2 74460550 74460550 G A SLC4A5 Silent p.N858N 0.29 TCGA-EE-A29W-06 3 137849889 137849889 G A A4GNT Silent p.S70S 0.45 TCGA-EE-A29W-06 3 152150590 152150590 C T MBNL1 Silent p.L144L 0.28 TCGA-EE-A29W-06 3 184909936 184909936 G A EHHADH 3'UTR 0.48 TCGA-EE-A29W-06 3 49700470 49700470 G C BSN Missense_Mutation p.G3627R 0.23 unknown(0) TCGA-EE-A29W-06 3 52773466 52773466 G A NEK4 Missense_Mutation p.H760Y 0.40 tolerated(0.14) possibly_damaging(0.61) TCGA-EE-A29W-06 3 69097533 69097533 G A TMF1 Missense_Mutation p.T108I 0.36 deleterious_low_confidence(0.04) benign(0.04) TCGA-EE-A29W-06 4 22390458 22390458 G A GPR125 Missense_Mutation p.P946S 0.42 tolerated(0.1) probably_damaging(1) TCGA-EE-A29W-06 4 26638892 26638892 C T TBC1D19 Silent p.I118I 0.62 TCGA-EE-A29W-06 4 55953824 55953824 C T KDR Silent p.E1204E 0.16 TCGA-EE-A29W-06 5 140346636 140346636 G A PCDHAC2 Silent p.T95T 0.80 TCGA-EE-A29W-06 5 140572729 140572729 C T PCDHB10 Missense_Mutation p.R202W 0.13 deleterious_low_confidence(0.05) benign(0.106) TCGA-EE-A29W-06 5 161116024 161116024 G A GABRA6 Missense_Mutation p.E99K 0.69 tolerated(0.78) benign(0.058) TCGA-EE-A29W-06 5 40959604 40959604 G C C7 Missense_Mutation p.G515R 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A29W-06 5 42689066 42689066 G A GHR Missense_Mutation p.E71K 0.66 deleterious(0.02) benign(0) TCGA-EE-A29W-06 6 110423339 110423339 G A WASF1 Missense_Mutation p.P325L 0.42 deleterious(0) unknown(0) TCGA-EE-A29W-06 6 117678055 117678055 G A ROS1 Missense_Mutation p.S1293F 0.31 tolerated(0.09) benign(0.006) TCGA-EE-A29W-06 6 127911457 127911457 G A C6orf58 Silent p.V300V 0.38 TCGA-EE-A29W-06 6 29643801 29643801 G A ZFP57 Silent p.F53F 0.41 TCGA-EE-A29W-06 6 46675875 46675875 C T PLA2G7 Nonsense_Mutation p.W298* 0.33 TCGA-EE-A29W-06 7 124386647 124386647 C T GPR37 Missense_Mutation p.E592K 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A29W-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-EE-A29W-06 7 20795159 20795159 G A ABCB5 Missense_Mutation p.G1229E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A29W-06 7 73245888 73245888 C T CLDN4 Silent p.I119I 0.35 TCGA-EE-A29W-06 8 109796863 109796863 C T TMEM74 Silent p.L155L 0.41 TCGA-EE-A29W-06 8 3081381 3081381 C T CSMD1 Missense_Mutation p.G1452R 0.26 probably_damaging(0.997) TCGA-EE-A29W-06 8 57354022 57354022 C T PENK Missense_Mutation p.E205K 0.41 deleterious(0.01) benign(0.42) TCGA-EE-A29W-06 8 67089264 67089264 C T CRH Missense_Mutation p.R150K 0.61 tolerated(0.2) benign(0.101) TCGA-EE-A29W-06 9 125552169 125552169 C A OR5C1 Missense_Mutation p.Q320K 0.57 tolerated_low_confidence(0.08) benign(0.004) TCGA-EE-A29W-06 9 127933365 127933365 T A PPP6C Missense_Mutation p.Q94L 0.76 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29W-06 9 138516465 138516465 G A GLT6D1 Silent p.F103F 0.77 TCGA-EE-A29W-06 9 138641983 138641983 G A KCNT1 Silent p.K98K 0.93 TCGA-EE-A29W-06 9 35675829 35675829 C T CA9 Nonsense_Mutation p.Q169* 0.93 TCGA-EE-A29W-06 X 30578040 30578040 G A CXorf21 Missense_Mutation p.P145S 0.85 tolerated(0.52) benign(0.075) TCGA-EE-A29X-06 10 71905212 71905212 T C TYSND1 Silent p.E377E 0.64 TCGA-EE-A29X-06 10 71905214 71905214 C T TYSND1 Missense_Mutation p.E377K 0.64 tolerated(0.26) benign(0.005) TCGA-EE-A29X-06 10 95721273 95721273 C T PIPSL RNA 0.49 TCGA-EE-A29X-06 11 101323826 101323826 C T TRPC6 Missense_Mutation p.E886K 0.45 deleterious(0.02) possibly_damaging(0.826) TCGA-EE-A29X-06 11 102248425 102248425 A G BIRC2 Missense_Mutation p.N522S 0.22 tolerated(0.44) benign(0.001) TCGA-EE-A29X-06 11 107501439 107501439 G A ELMOD1 Silent p.R59R 0.38 TCGA-EE-A29X-06 11 108381788 108381788 C T EXPH5 Silent p.R1482R 0.43 TCGA-EE-A29X-06 11 108381789 108381789 C T EXPH5 Missense_Mutation p.R1482K 0.49 tolerated(0.43) benign(0.004) TCGA-EE-A29X-06 11 118374290 118374290 A G KMT2A Silent p.P2561P 0.44 TCGA-EE-A29X-06 11 120008273 120008273 G A TRIM29 Missense_Mutation p.A156V 0.29 tolerated(0.22) benign(0.11) TCGA-EE-A29X-06 11 14284396 14284396 G A RP11-21L19.1 RNA 0.64 TCGA-EE-A29X-06 11 5079889 5079889 C T OR52E2 Silent p.T323T 0.56 TCGA-EE-A29X-06 11 55659114 55659114 G A TRIM51 3'UTR 0.30 TCGA-EE-A29X-06 11 60702113 60702113 C A TMEM132A Silent p.P572P 0.38 TCGA-EE-A29X-06 11 64825928 64825928 G A NAALADL1 Silent p.I22I 0.39 TCGA-EE-A29X-06 11 65398048 65398048 C A PCNXL3 Silent p.R1481R 0.08 TCGA-EE-A29X-06 11 75134908 75134908 G A KLHL35 Missense_Mutation p.P464L 0.40 deleterious(0.03) unknown(0) TCGA-EE-A29X-06 11 92258086 92258086 G A FAT3 Silent p.Q1193Q 0.35 TCGA-EE-A29X-06 11 99872785 99872785 G A CNTN5 Silent p.E299E 0.26 TCGA-EE-A29X-06 12 110221414 110221414 G A TRPV4 3'UTR 0.74 TCGA-EE-A29X-06 12 110883265 110883265 G A ARPC3 Missense_Mutation p.P33L 0.56 deleterious(0.02) possibly_damaging(0.88) TCGA-EE-A29X-06 12 110883266 110883266 G A ARPC3 Missense_Mutation p.P33S 0.56 deleterious(0.01) benign(0.151) TCGA-EE-A29X-06 12 12022474 12022474 C T ETV6 Missense_Mutation p.P194S 0.24 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A29X-06 12 13769424 13769424 C T GRIN2B Silent p.R431R 0.20 TCGA-EE-A29X-06 12 1399136 1399136 G C ERC1 Missense_Mutation p.R913P 0.28 deleterious(0) possibly_damaging(0.678) TCGA-EE-A29X-06 12 45000984 45000984 G A NELL2 Missense_Mutation p.P594L 0.58 deleterious(0.03) benign(0.425) TCGA-EE-A29X-06 12 53084867 53084867 G A KRT77 3'UTR 0.65 TCGA-EE-A29X-06 12 6637023 6637023 C T NCAPD2 Silent p.I996I 0.29 TCGA-EE-A29X-06 12 71286730 71286730 A C PTPRR Missense_Mutation p.F29C 0.38 deleterious_low_confidence(0) benign(0.299) TCGA-EE-A29X-06 13 23853509 23853509 G A SGCG Missense_Mutation p.V133I 0.37 tolerated(0.06) benign(0.119) TCGA-EE-A29X-06 13 46287733 46287733 G A SPERT Silent p.K191K 0.29 TCGA-EE-A29X-06 13 46357566 46357566 C T SIAH3 Silent p.G254G 0.32 TCGA-EE-A29X-06 14 101436214 101436214 C T RP11-909M7.3 Intron 0.69 TCGA-EE-A29X-06 14 107211180 107211180 G A IGHV3-73 Silent p.L37L 0.62 TCGA-EE-A29X-06 14 69259613 69259613 C T ZFP36L1 Missense_Mutation p.E15K 0.59 deleterious(0.02) possibly_damaging(0.76) TCGA-EE-A29X-06 15 101562674 101562674 C T LRRK1 Missense_Mutation p.P647S 0.38 tolerated(0.08) probably_damaging(1) TCGA-EE-A29X-06 15 23261855 23261855 C A GOLGA8I Missense_Mutation p.Q323K 0.11 tolerated(0.08) probably_damaging(0.989) TCGA-EE-A29X-06 15 25453110 25453110 C T SNORD115-22 5'Flank 0.50 TCGA-EE-A29X-06 15 42680027 42680027 C T CAPN3 Missense_Mutation p.T192I 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A29X-06 15 43819242 43819242 C T MAP1A Silent p.L1857L 0.48 TCGA-EE-A29X-06 15 49880259 49880259 C T FAM227B Missense_Mutation p.R120Q 0.24 tolerated(0.44) benign(0.028) TCGA-EE-A29X-06 15 51350470 51350470 G A TNFAIP8L3 Missense_Mutation p.H163Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A29X-06 15 70351115 70351115 G A TLE3 Missense_Mutation p.P269S 0.38 tolerated(0.24) possibly_damaging(0.717) TCGA-EE-A29X-06 15 74636194 74636194 G A CYP11A1 Silent p.F255F 0.29 TCGA-EE-A29X-06 16 21734260 21734260 C T OTOA Missense_Mutation p.S614F 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A29X-06 16 4790608 4790608 C T C16orf71 Missense_Mutation p.S244F 0.35 deleterious(0.03) possibly_damaging(0.466) TCGA-EE-A29X-06 16 71406091 71406091 T G CALB2 Missense_Mutation p.F44V 0.09 deleterious(0) benign(0.058) TCGA-EE-A29X-06 16 77228721 77228721 G T MON1B Missense_Mutation p.W322L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A29X-06 16 77325337 77325337 C T ADAMTS18 Silent p.E1076E 0.55 TCGA-EE-A29X-06 17 37009995 37009995 C G RPL23 5'UTR 0.58 TCGA-EE-A29X-06 17 39643210 39643210 C T KRT36 Silent p.E400E 0.44 TCGA-EE-A29X-06 17 40932962 40932962 C - WNK4 Frame_Shift_Del p.D85Ifs*32 0.13 TCGA-EE-A29X-06 17 42275028 42275028 C A ATXN7L3 Missense_Mutation p.R41L 0.58 deleterious(0) probably_damaging(0.972) TCGA-EE-A29X-06 17 4416546 4416546 C T SPNS2 Silent p.V125V 0.55 TCGA-EE-A29X-06 17 4416547 4416547 C T SPNS2 Missense_Mutation p.L126F 0.56 deleterious(0) possibly_damaging(0.812) TCGA-EE-A29X-06 17 47123728 47123728 C T IGF2BP1 Missense_Mutation p.A545V 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A29X-06 17 55183806 55183806 T G AKAP1 Missense_Mutation p.N327K 0.53 tolerated(0.34) benign(0.032) TCGA-EE-A29X-06 17 62043901 62043901 T C SCN4A Missense_Mutation p.N347S 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.902) TCGA-EE-A29X-06 17 7259218 7259218 C T TMEM95 Silent p.L96L 0.51 TCGA-EE-A29X-06 17 73729654 73729654 C T ITGB4 Missense_Mutation p.S513F 0.71 deleterious(0) possibly_damaging(0.904) TCGA-EE-A29X-06 17 7577105 7577105 G A TP53 Missense_Mutation p.P278L 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A29X-06 17 79205748 79205748 G A ENTHD2 Silent p.S200S 0.69 TCGA-EE-A29X-06 17 80616413 80616413 G A RAB40B Silent p.I173I 0.60 TCGA-EE-A29X-06 18 52556557 52556557 G A RAB27B Silent p.E190E 0.46 TCGA-EE-A29X-06 18 61323245 61323245 C T SERPINB3 Silent p.Q273Q 0.50 TCGA-EE-A29X-06 19 3611986 3611986 A G CACTIN Missense_Mutation p.C738R 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A29X-06 19 39980495 39980495 A G TIMM50 3'UTR 0.43 TCGA-EE-A29X-06 19 43259372 43259372 C T PSG8 Silent p.R252R 0.06 TCGA-EE-A29X-06 19 43433850 43433850 G A PSG7 Silent p.I151I 0.59 TCGA-EE-A29X-06 19 51452022 51452022 G A KLK5 Silent p.F200F 0.67 TCGA-EE-A29X-06 19 9017365 9017365 C T MUC16 Silent p.R12653R 0.42 TCGA-EE-A29X-06 1 114309021 114309021 G A RSBN1 Missense_Mutation p.R664C 0.61 deleterious(0) probably_damaging(0.997) TCGA-EE-A29X-06 1 114940389 114940389 A G TRIM33 Silent p.L1089L 0.12 TCGA-EE-A29X-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.59 tolerated(0.06) benign(0.006) TCGA-EE-A29X-06 1 119469221 119469221 C A TBX15 Missense_Mutation p.A39S 0.14 tolerated(1) benign(0.444) TCGA-EE-A29X-06 1 12887610 12887610 C T PRAMEF11 Missense_Mutation p.G83R 0.08 tolerated(0.53) benign(0.006) TCGA-EE-A29X-06 1 159410164 159410164 G A OR10J1 Missense_Mutation p.E206K 0.42 deleterious(0.01) benign(0.304) TCGA-EE-A29X-06 1 17599926 17599926 C T PADI3 Missense_Mutation p.P380L 0.19 deleterious(0.01) benign(0.169) TCGA-EE-A29X-06 1 197396583 197396583 G A CRB1 Splice_Site p.X710_splice 0.16 TCGA-EE-A29X-06 1 228433280 228433280 C T OBSCN Silent p.V1308V 0.38 TCGA-EE-A29X-06 1 233344346 233344346 G A PCNXL2 Silent p.A927A 0.24 TCGA-EE-A29X-06 1 247712498 247712498 G A GCSAML Missense_Mutation p.G2E 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A29X-06 1 247835593 247835593 G A OR13G1 Missense_Mutation p.P251S 0.13 tolerated(0.2) possibly_damaging(0.715) TCGA-EE-A29X-06 1 248344204 248344204 G A OR2M2 Missense_Mutation p.G306E 0.38 tolerated(0.16) benign(0.019) TCGA-EE-A29X-06 1 248512089 248512089 A G OR14C36 Missense_Mutation p.T5A 0.41 deleterious(0) possibly_damaging(0.899) TCGA-EE-A29X-06 1 27428548 27428548 G A SLC9A1 Missense_Mutation p.R632C 0.12 deleterious(0) probably_damaging(0.988) TCGA-EE-A29X-06 1 36926372 36926372 C T MRPS15 Silent p.E102E 0.54 TCGA-EE-A29X-06 1 43021909 43021909 G A CCDC30 Missense_Mutation p.E170K 0.29 tolerated(0.06) possibly_damaging(0.478) TCGA-EE-A29X-06 1 43783252 43783252 G A TIE1 Missense_Mutation p.D880N 0.28 deleterious(0) probably_damaging(0.915) TCGA-EE-A29X-06 1 47279728 47279728 C T CYP4B1 Silent p.D256D 0.14 TCGA-EE-A29X-06 20 32436417 32436417 C T CHMP4B Missense_Mutation p.A112V 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A29X-06 20 32436418 32436418 C T CHMP4B Silent p.A112A 0.24 TCGA-EE-A29X-06 20 44507367 44507367 G A ZSWIM3 3'UTR 0.39 TCGA-EE-A29X-06 20 55012536 55012536 G A CASS4 Missense_Mutation p.S118N 0.36 deleterious(0.02) possibly_damaging(0.536) TCGA-EE-A29X-06 20 57876575 57876575 G A EDN3 Missense_Mutation p.E55K 0.39 tolerated(0.27) benign(0.061) TCGA-EE-A29X-06 20 62560693 62560693 A T DNAJC5 Nonsense_Mutation p.K46* 0.30 TCGA-EE-A29X-06 21 10862838 10862838 G A IGHV1OR21-1 Missense_Mutation p.G45E 0.15 deleterious(0) probably_damaging(0.991) TCGA-EE-A29X-06 21 10973727 10973727 C T TPTE Missense_Mutation p.E3K 0.14 tolerated_low_confidence(0.2) benign(0) TCGA-EE-A29X-06 22 26228956 26228956 C T MYO18B Missense_Mutation p.P1018S 0.22 tolerated(0.67) possibly_damaging(0.495) TCGA-EE-A29X-06 22 37528505 37528505 C T IL2RB Silent p.L274L 0.33 TCGA-EE-A29X-06 22 37964165 37964165 C T CDC42EP1 Missense_Mutation p.P172S 0.24 tolerated(0.16) benign(0.147) TCGA-EE-A29X-06 22 38154108 38154108 G A TRIOBP Missense_Mutation p.G2059E 0.52 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A29X-06 22 50926695 50926695 C T MIOX Intron 0.40 TCGA-EE-A29X-06 2 109489923 109489923 C T CCDC138 Silent p.F570F 0.25 TCGA-EE-A29X-06 2 113675351 113675351 G A IL37 Silent p.L135L 0.47 TCGA-EE-A29X-06 2 120438600 120438600 C T TMEM177 Silent p.L57L 0.30 TCGA-EE-A29X-06 2 135260541 135260541 G A TMEM163 Silent p.F162F 0.38 TCGA-EE-A29X-06 2 141299473 141299473 G A LRP1B Missense_Mutation p.S2421L 0.40 benign(0.32) TCGA-EE-A29X-06 2 148733545 148733545 C T ORC4 Splice_Site 0.32 TCGA-EE-A29X-06 2 179255918 179255918 C T OSBPL6 Missense_Mutation p.P832L 0.37 deleterious(0) probably_damaging(0.995) TCGA-EE-A29X-06 2 179255919 179255919 C T OSBPL6 Silent p.P832P 0.38 TCGA-EE-A29X-06 2 179730496 179730496 C T CCDC141 Missense_Mutation p.E908K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A29X-06 2 190338913 190338913 T A WDR75 Missense_Mutation p.L684Q 0.32 deleterious(0) probably_damaging(0.986) TCGA-EE-A29X-06 2 200136952 200136952 G A SATB2 Silent p.A728A 0.39 TCGA-EE-A29X-06 2 206166306 206166306 G A PARD3B Silent p.T775T 0.38 TCGA-EE-A29X-06 2 212289026 212289026 C T ERBB4 Missense_Mutation p.G907E 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A29X-06 2 215274924 215274924 G A SPAG16 Missense_Mutation p.G594E 0.35 tolerated(0.06) possibly_damaging(0.718) TCGA-EE-A29X-06 2 230875560 230875560 G A FBXO36 Missense_Mutation p.R176K 0.29 tolerated(0.49) benign(0.001) TCGA-EE-A29X-06 2 230910504 230910504 G A SLC16A14 Silent p.I446I 0.39 TCGA-EE-A29X-06 2 238280589 238280589 C T COL6A3 Silent p.V1357V 0.28 TCGA-EE-A29X-06 2 26699021 26699021 G A OTOF Silent p.F947F 0.24 TCGA-EE-A29X-06 3 10089677 10089677 C T FANCD2 Missense_Mutation p.S452L 0.19 tolerated(0.74) benign(0.012) TCGA-EE-A29X-06 3 111664167 111664167 G A PHLDB2 Missense_Mutation p.G817E 0.37 deleterious(0.02) benign(0.228) TCGA-EE-A29X-06 3 116163916 116163916 G A LSAMP 5'UTR 0.50 TCGA-EE-A29X-06 3 136019900 136019900 A G PCCB Missense_Mutation p.I325V 0.47 tolerated_low_confidence(0.33) benign(0.026) TCGA-EE-A29X-06 3 36873966 36873966 C T TRANK1 Missense_Mutation p.D2326N 0.18 tolerated(0.31) benign(0.002) TCGA-EE-A29X-06 3 38350536 38350536 C T SLC22A14 Silent p.I289I 0.22 TCGA-EE-A29X-06 3 45875784 45875784 T A LZTFL1 Missense_Mutation p.L110F 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A29X-06 3 46306838 46306838 G A CCR3 Silent p.R84R 0.35 TCGA-EE-A29X-06 3 46874471 46874471 C T PRSS42 Silent p.R199R 0.38 TCGA-EE-A29X-06 3 46874472 46874472 C T PRSS42 Missense_Mutation p.R199K 0.38 tolerated(0.68) benign(0.115) TCGA-EE-A29X-06 3 48464220 48464220 C T PLXNB1 Missense_Mutation p.G415E 0.33 tolerated(0.07) possibly_damaging(0.794) TCGA-EE-A29X-06 3 52293245 52293245 G A WDR82 Missense_Mutation p.S246L 0.35 deleterious(0.01) benign(0.349) TCGA-EE-A29X-06 3 53785881 53785881 G A CACNA1D Missense_Mutation p.E1228K 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A29X-06 3 58084469 58084469 G A FLNB Silent p.V393V 0.32 TCGA-EE-A29X-06 3 58398679 58398679 C T PXK Missense_Mutation p.P506L 0.37 deleterious(0.02) possibly_damaging(0.536) TCGA-EE-A29X-06 3 97851871 97851871 G A OR5H1 Silent p.T110T 0.40 TCGA-EE-A29X-06 4 106755698 106755698 C T GSTCD Silent p.C537C 0.37 TCGA-EE-A29X-06 4 106766726 106766726 C G GSTCD Missense_Mutation p.P632A 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A29X-06 4 125593615 125593615 G A ANKRD50 Missense_Mutation p.R273C 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A29X-06 4 187088408 187088408 T A FAM149A Missense_Mutation p.I456N 0.34 deleterious(0.04) possibly_damaging(0.733) TCGA-EE-A29X-06 4 20591354 20591354 G A SLIT2 Missense_Mutation p.G1059E 0.28 deleterious(0.03) probably_damaging(0.914) TCGA-EE-A29X-06 4 47788900 47788900 G A CORIN Missense_Mutation p.P84L 0.25 tolerated_low_confidence(0.1) benign(0.003) TCGA-EE-A29X-06 4 48169925 48169925 C T TEC Missense_Mutation p.E181K 0.32 tolerated(0.65) benign(0.012) TCGA-EE-A29X-06 4 55955863 55955863 G A KDR Missense_Mutation p.S1100F 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A29X-06 4 70146681 70146681 C T UGT2B28 Missense_Mutation p.P155S 0.29 deleterious(0.04) probably_damaging(0.982) TCGA-EE-A29X-06 4 7435740 7435740 C T PSAPL1 Silent p.K289K 0.39 TCGA-EE-A29X-06 4 98762046 98762046 G A STPG2 Missense_Mutation p.S361L 0.50 deleterious(0) probably_damaging(0.938) TCGA-EE-A29X-06 5 110820041 110820041 G A CAMK4 Silent p.E433E 0.50 TCGA-EE-A29X-06 5 114473250 114473250 C T TRIM36 Missense_Mutation p.E311K 0.56 tolerated(0.07) possibly_damaging(0.577) TCGA-EE-A29X-06 5 1272354 1272354 G A TERT Silent p.F776F 0.36 TCGA-EE-A29X-06 5 134914211 134914211 G A CXCL14 Missense_Mutation p.S40F 0.59 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A29X-06 5 13754372 13754372 C T DNAH5 Missense_Mutation p.E3499K 0.37 possibly_damaging(0.621) TCGA-EE-A29X-06 5 140515462 140515462 G A PCDHB5 Missense_Mutation p.G149E 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-EE-A29X-06 5 24491716 24491716 G A CDH10 Silent p.I615I 0.30 TCGA-EE-A29X-06 5 24509771 24509771 G A CDH10 Missense_Mutation p.S387F 0.35 deleterious(0) possibly_damaging(0.467) TCGA-EE-A29X-06 5 33576572 33576572 C T ADAMTS12 Missense_Mutation p.A1187T 0.31 tolerated(0.39) benign(0.012) TCGA-EE-A29X-06 5 38407088 38407088 G A EGFLAM Silent p.Q329Q 0.33 TCGA-EE-A29X-06 5 41149459 41149459 G A C6 Missense_Mutation p.S836F 0.39 deleterious(0) probably_damaging(0.933) TCGA-EE-A29X-06 5 57751514 57751514 G A PLK2 Missense_Mutation p.P493S 0.22 tolerated(0.12) benign(0.042) TCGA-EE-A29X-06 5 9119117 9119117 C T SEMA5A Missense_Mutation p.E640K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A29X-06 6 100369011 100369011 C T MCHR2 Silent p.Q276Q 0.10 TCGA-EE-A29X-06 6 132006568 132006568 C T ENPP3 Silent p.F395F 0.56 TCGA-EE-A29X-06 6 151766442 151766442 C T RMND1 Splice_Site p.X168_splice 0.48 TCGA-EE-A29X-06 6 161966407 161966407 G A PARK2 Intron 0.55 TCGA-EE-A29X-06 6 30128513 30128513 G A TRIM10 Silent p.T41T 0.38 TCGA-EE-A29X-06 6 31752241 31752241 G A VARS Silent p.S502S 0.32 TCGA-EE-A29X-06 6 32188953 32188953 C T NOTCH4 Missense_Mutation p.D201N 0.38 tolerated(0.24) benign(0.077) TCGA-EE-A29X-06 6 34985594 34985594 C T ANKS1A Missense_Mutation p.P590S 0.53 tolerated(0.59) benign(0) TCGA-EE-A29X-06 6 35715185 35715185 C T ARMC12 Silent p.L225L 0.53 TCGA-EE-A29X-06 7 100239144 100239144 C T TFR2 5'UTR 0.17 TCGA-EE-A29X-06 7 103322669 103322669 C T RELN Missense_Mutation p.G395R 0.34 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A29X-06 7 142626589 142626589 C T TRPV5 Missense_Mutation p.A141T 0.29 deleterious(0) probably_damaging(0.939) TCGA-EE-A29X-06 7 14613968 14613968 G A DGKB Silent p.L548L 0.38 TCGA-EE-A29X-06 7 22349669 22349669 C T RAPGEF5 5'UTR 0.31 TCGA-EE-A29X-06 7 23827599 23827599 G A STK31 Missense_Mutation p.E830K 0.33 deleterious(0) probably_damaging(0.951) TCGA-EE-A29X-06 7 2587019 2587019 G A BRAT1 Missense_Mutation p.S74F 0.42 deleterious(0) probably_damaging(0.94) TCGA-EE-A29X-06 7 48559846 48559846 C T ABCA13 Silent p.L4669L 0.30 TCGA-EE-A29X-06 7 54617696 54617696 G A VSTM2A Missense_Mutation p.R156K 0.55 deleterious(0.05) possibly_damaging(0.669) TCGA-EE-A29X-06 7 82582174 82582174 G A PCLO Missense_Mutation p.P2699S 0.41 unknown(0) TCGA-EE-A29X-06 7 82584826 82584826 G A PCLO Nonsense_Mutation p.R1815* 0.40 TCGA-EE-A29X-06 7 99272187 99272187 C T CYP3A5 Missense_Mutation p.E63K 0.27 tolerated(0.25) benign(0.078) TCGA-EE-A29X-06 8 121293298 121293298 G A COL14A1 Missense_Mutation p.R1275K 0.37 tolerated(1) benign(0) TCGA-EE-A29X-06 8 121293299 121293299 G A COL14A1 Splice_Site p.X1275_splice 0.36 TCGA-EE-A29X-06 8 143562671 143562671 C T BAI1 Missense_Mutation p.P629S 0.26 deleterious(0) possibly_damaging(0.876) TCGA-EE-A29X-06 8 15967646 15967646 C T MSR1 Missense_Mutation p.G435E 0.40 deleterious(0) possibly_damaging(0.588) TCGA-EE-A29X-06 8 87679279 87679279 G A CNGB3 Silent p.F242F 0.42 TCGA-EE-A29X-06 8 97621634 97621634 T C SDC2 Missense_Mutation p.I155T 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A29X-06 9 35717705 35717705 G A TLN1 Missense_Mutation p.R692W 0.59 deleterious(0.01) possibly_damaging(0.511) TCGA-EE-A29X-06 X 100125713 100125713 G A NOX1 Missense_Mutation p.L46F 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A29X-06 X 104440227 104440227 G A IL1RAPL2 Silent p.V51V 0.34 TCGA-EE-A29X-06 X 110496399 110496399 C T CAPN6 Missense_Mutation p.E115K 0.27 tolerated(0.14) benign(0.005) TCGA-EE-A29X-06 X 120182675 120182675 G A GLUD2 Silent p.L379L 0.37 TCGA-EE-A29X-06 X 129343677 129343677 G A ZNF280C Silent p.N664N 0.30 TCGA-EE-A29X-06 X 130218372 130218372 G A ARHGAP36 Missense_Mutation p.E247K 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A29X-06 X 130222697 130222697 C T ARHGAP36 Missense_Mutation p.P528S 0.37 tolerated_low_confidence(0.14) probably_damaging(0.998) TCGA-EE-A29X-06 X 144904694 144904694 G A SLITRK2 Missense_Mutation p.G251R 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A29X-06 X 144905881 144905881 C T SLITRK2 Silent p.R646R 0.22 TCGA-EE-A29X-06 X 148797875 148797875 C T MAGEA11 Silent p.I243I 0.36 TCGA-EE-A29X-06 X 153043810 153043810 G A SRPK3 5'Flank 0.40 TCGA-EE-A29X-06 X 26212168 26212168 C T MAGEB6 Missense_Mutation p.P69S 0.34 tolerated(0.72) possibly_damaging(0.753) TCGA-EE-A29X-06 X 47775814 47775814 C T ZNF81 Missense_Mutation p.S590F 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A29X-06 X 48372736 48372736 G A PORCN Silent p.E276E 0.43 TCGA-EE-A29X-06 X 63405938 63405938 G A AMER1 3'UTR 0.47 TCGA-EE-A29X-06 X 69594073 69594073 C T KIF4A Nonsense_Mutation p.Q583* 0.30 TCGA-EE-A29X-06 X 83374903 83374903 C G RPS6KA6 Missense_Mutation p.G260A 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2A0-06 10 100017840 100017840 C T LOXL4 Missense_Mutation p.V335I 0.27 tolerated(0.41) benign(0.063) TCGA-EE-A2A0-06 10 114173028 114173028 C T ACSL5 Missense_Mutation p.P405L 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2A0-06 10 11505081 11505081 G A USP6NL Missense_Mutation p.P633S 0.11 tolerated_low_confidence(0.83) benign(0.006) TCGA-EE-A2A0-06 10 129866543 129866543 C T PTPRE Missense_Mutation p.H334Y 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A0-06 10 135026241 135026241 C T KNDC1 Nonsense_Mutation p.R1420* 0.15 TCGA-EE-A2A0-06 10 20335879 20335879 G A PLXDC2 Missense_Mutation p.D136N 0.19 tolerated(0.4) probably_damaging(0.948) TCGA-EE-A2A0-06 10 22618322 22618322 C T BMI1 Missense_Mutation p.P278S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.84) TCGA-EE-A2A0-06 10 24832930 24832930 C T KIAA1217 Silent p.F1577F 0.17 TCGA-EE-A2A0-06 10 31810669 31810669 C T ZEB1 Silent p.I803I 0.18 TCGA-EE-A2A0-06 10 37421261 37421261 A C ANKRD30A Missense_Mutation p.N146H 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A2A0-06 10 43316001 43316001 C T BMS1 Nonsense_Mutation p.R939* 0.31 TCGA-EE-A2A0-06 10 45652472 45652472 A G RP11-445N18.7 RNA 0.24 TCGA-EE-A2A0-06 10 49392647 49392647 G A FRMPD2 Missense_Mutation p.S849F 0.16 deleterious(0) probably_damaging(0.965) TCGA-EE-A2A0-06 10 61830498 61830498 C T ANK3 Missense_Mutation p.E3381K 0.15 benign(0.052) TCGA-EE-A2A0-06 10 61832325 61832325 C T ANK3 Missense_Mutation p.D2772N 0.15 benign(0.094) TCGA-EE-A2A0-06 10 61958111 61958111 G A ANK3 Missense_Mutation p.S559F 0.15 possibly_damaging(0.701) TCGA-EE-A2A0-06 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.20 TCGA-EE-A2A0-06 10 93185065 93185065 A G HECTD2 Missense_Mutation p.I56V 0.19 tolerated_low_confidence(0.18) benign(0.009) TCGA-EE-A2A0-06 10 99350161 99350161 G A C10orf62 Silent p.R169R 0.23 TCGA-EE-A2A0-06 11 102487566 102487566 C T MMP20 Nonsense_Mutation p.W117* 0.11 TCGA-EE-A2A0-06 11 103014048 103014048 C T DYNC2H1 Missense_Mutation p.L876F 0.08 benign(0.331) TCGA-EE-A2A0-06 11 103797715 103797715 T A PDGFD Silent p.G304G 0.18 TCGA-EE-A2A0-06 11 1213622 1213622 T G MUC5AC RNA 0.20 TCGA-EE-A2A0-06 11 123900446 123900446 G A OR10G8 Silent p.G39G 0.26 TCGA-EE-A2A0-06 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.15 tolerated(0.19) benign(0.224) TCGA-EE-A2A0-06 11 129722547 129722547 C T TMEM45B Missense_Mutation p.S57F 0.14 deleterious(0) possibly_damaging(0.823) TCGA-EE-A2A0-06 11 130060506 130060506 C T ST14 Silent p.D264D 0.22 TCGA-EE-A2A0-06 11 130750627 130750627 G A SNX19 Missense_Mutation p.S883F 0.25 deleterious(0) probably_damaging(0.962) TCGA-EE-A2A0-06 11 130775851 130775851 G A SNX19 Missense_Mutation p.P814S 0.27 tolerated(0.91) benign(0.004) TCGA-EE-A2A0-06 11 17426145 17426145 G A ABCC8 Silent p.S1157S 0.18 TCGA-EE-A2A0-06 11 18955621 18955621 G A MRGPRX1 Silent p.F237F 0.09 TCGA-EE-A2A0-06 11 18956064 18956064 T G MRGPRX1 Missense_Mutation p.I90L 0.10 tolerated(0.36) benign(0.002) TCGA-EE-A2A0-06 11 1953709 1953709 C T TNNT3 Missense_Mutation p.P46S 0.22 deleterious(0.04) probably_damaging(0.944) TCGA-EE-A2A0-06 11 33308619 33308619 A G HIPK3 Missense_Mutation p.N220S 0.17 tolerated(0.24) benign(0.009) TCGA-EE-A2A0-06 11 3797192 3797192 G A NUP98 Missense_Mutation p.P139S 0.19 deleterious(0.01) possibly_damaging(0.628) TCGA-EE-A2A0-06 11 40136969 40136969 G A LRRC4C Missense_Mutation p.H292Y 0.17 tolerated(1) benign(0) TCGA-EE-A2A0-06 11 47283430 47283430 C T NR1H3 Intron 0.19 TCGA-EE-A2A0-06 11 4824952 4824952 G A OR52R1 Missense_Mutation p.S220L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 11 4825218 4825218 G A OR52R1 Silent p.F131F 0.22 TCGA-EE-A2A0-06 11 48267238 48267238 G A OR4X2 Missense_Mutation p.G195R 0.15 deleterious(0) probably_damaging(0.939) TCGA-EE-A2A0-06 11 49831733 49831733 C T RP11-707M1.1 RNA 0.16 TCGA-EE-A2A0-06 11 5020696 5020696 C T OR51L1 Missense_Mutation p.P162S 0.15 deleterious(0.03) benign(0.303) TCGA-EE-A2A0-06 11 51516157 51516157 G A OR4C46 Missense_Mutation p.M292I 0.17 tolerated_low_confidence(0.09) benign(0.016) TCGA-EE-A2A0-06 11 5275627 5275627 A T HBG2 Silent p.T70T 0.09 TCGA-EE-A2A0-06 11 55111034 55111034 C T OR4A16 Missense_Mutation p.R120C 0.14 tolerated_low_confidence(0.05) benign(0.082) TCGA-EE-A2A0-06 11 55587919 55587919 G A OR5D18 Missense_Mutation p.V272I 0.14 tolerated(0.39) benign(0.008) TCGA-EE-A2A0-06 11 55658717 55658717 G A TRIM51 Missense_Mutation p.G323E 0.20 tolerated(1) benign(0) TCGA-EE-A2A0-06 11 55872708 55872708 C T OR8H2 Missense_Mutation p.L64F 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2A0-06 11 56127804 56127804 T C OR8J1 Missense_Mutation p.F28L 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2A0-06 11 56380844 56380844 C T OR5M1 Missense_Mutation p.M45I 0.20 tolerated(0.09) benign(0.005) TCGA-EE-A2A0-06 11 56510428 56510428 T G OR9G4 Missense_Mutation p.K287T 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.35 TCGA-EE-A2A0-06 11 5730400 5730400 C T TRIM22 Missense_Mutation p.S340F 0.24 tolerated(0.61) benign(0.41) TCGA-EE-A2A0-06 11 59629046 59629046 G A TCN1 Silent p.F170F 0.17 TCGA-EE-A2A0-06 11 60705349 60705349 C T SLC15A3 Silent p.K528K 0.10 TCGA-EE-A2A0-06 11 63137540 63137540 G A SLC22A9 Silent p.Q4Q 0.26 TCGA-EE-A2A0-06 11 68154169 68154169 C T LRP5 Silent p.H467H 0.19 TCGA-EE-A2A0-06 11 7111147 7111147 C T RBMXL2 Missense_Mutation p.R266C 0.17 deleterious(0.02) possibly_damaging(0.689) TCGA-EE-A2A0-06 11 7818236 7818236 C T OR5P2 Missense_Mutation p.R85K 0.22 tolerated(0.42) benign(0.002) TCGA-EE-A2A0-06 11 7982819 7982819 C T NLRP10 Missense_Mutation p.E114K 0.11 tolerated(0.08) benign(0.062) TCGA-EE-A2A0-06 11 8158998 8158998 G A RIC3 Silent p.L150L 0.22 TCGA-EE-A2A0-06 11 86382871 86382871 C T ME3 Missense_Mutation p.G39D 0.11 tolerated(0.11) benign(0.001) TCGA-EE-A2A0-06 11 93088644 93088644 G A CCDC67 Missense_Mutation p.R46Q 0.19 tolerated(0.13) benign(0.056) TCGA-EE-A2A0-06 11 99690377 99690377 G A CNTN5 Missense_Mutation p.R53Q 0.10 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A2A0-06 12 101560291 101560291 G A SLC5A8 Nonsense_Mutation p.Q503* 0.14 TCGA-EE-A2A0-06 12 101699779 101699779 C T UTP20 Missense_Mutation p.S623F 0.17 deleterious(0) probably_damaging(0.95) TCGA-EE-A2A0-06 12 106890667 106890667 G A POLR3B Silent p.G985G 0.11 TCGA-EE-A2A0-06 12 109826566 109826566 G A MYO1H Missense_Mutation p.D15N 0.17 deleterious(0) benign(0.067) TCGA-EE-A2A0-06 12 11506861 11506861 C T PRB1 Missense_Mutation p.G59E 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2A0-06 12 11546017 11546017 C T PRB2 Missense_Mutation p.G332E 0.14 tolerated(0.15) unknown(0) TCGA-EE-A2A0-06 12 11546614 11546614 G A PRB2 Missense_Mutation p.P133L 0.16 tolerated(0.06) unknown(0) TCGA-EE-A2A0-06 12 133245501 133245501 G A POLE Missense_Mutation p.L607F 0.26 deleterious(0) possibly_damaging(0.803) TCGA-EE-A2A0-06 12 23793772 23793772 G A SOX5 Missense_Mutation p.P331S 0.19 tolerated(0.13) probably_damaging(0.998) TCGA-EE-A2A0-06 12 27908197 27908197 C T MRPS35 Silent p.I262I 0.16 TCGA-EE-A2A0-06 12 31116768 31116768 G A TSPAN11 Missense_Mutation p.G31E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 12 45410386 45410386 G A DBX2 Nonsense_Mutation p.Q235* 0.20 TCGA-EE-A2A0-06 12 47170741 47170741 C T SLC38A4 Missense_Mutation p.G374R 0.20 deleterious(0) possibly_damaging(0.821) TCGA-EE-A2A0-06 12 48134205 48134205 C T RAPGEF3 Intron 0.17 TCGA-EE-A2A0-06 12 4854665 4854665 C T GALNT8 Missense_Mutation p.R311C 0.12 tolerated(0.06) benign(0.027) TCGA-EE-A2A0-06 12 48920222 48920222 T C OR8S1 Silent p.L270L 0.23 TCGA-EE-A2A0-06 12 49720992 49720992 C T TROAP Missense_Mutation p.A257V 0.19 deleterious(0) probably_damaging(0.917) TCGA-EE-A2A0-06 12 49726990 49726990 G A C1QL4 Silent p.D188D 0.22 TCGA-EE-A2A0-06 12 51853749 51853749 C T SLC4A8 Silent p.F290F 0.21 TCGA-EE-A2A0-06 12 53818663 53818663 C T AMHR2 Nonsense_Mutation p.Q135* 0.11 TCGA-EE-A2A0-06 12 54106532 54106532 C T CALCOCO1 Intron 0.25 TCGA-EE-A2A0-06 12 55615074 55615074 G A OR10A7 Missense_Mutation p.R89K 0.15 tolerated(0.83) benign(0.001) TCGA-EE-A2A0-06 12 55641546 55641546 C T OR6C74 Silent p.L159L 0.16 TCGA-EE-A2A0-06 12 55688295 55688295 G A OR6C6 Missense_Mutation p.S241F 0.17 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-EE-A2A0-06 12 55725560 55725560 C T OR6C3 Missense_Mutation p.L26F 0.17 tolerated_low_confidence(0.23) benign(0.02) TCGA-EE-A2A0-06 12 55794498 55794498 G A OR6C65 Silent p.R62R 0.21 TCGA-EE-A2A0-06 12 56233450 56233450 C T MMP19 Missense_Mutation p.G199E 0.12 deleterious(0.02) possibly_damaging(0.608) TCGA-EE-A2A0-06 12 57396507 57396507 G C ZBTB39 3'UTR 0.40 TCGA-EE-A2A0-06 12 57570907 57570907 T A LRP1 Missense_Mutation p.Y1359N 0.15 probably_damaging(0.998) TCGA-EE-A2A0-06 12 70178597 70178597 T C RAB3IP Splice_Site p.X218_splice 0.11 TCGA-EE-A2A0-06 12 70980858 70980858 C T PTPRB Missense_Mutation p.R747Q 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2A0-06 12 71978151 71978151 C T LGR5 Silent p.F787F 0.16 TCGA-EE-A2A0-06 12 73056945 73056945 C T TRHDE Silent p.F1015F 0.32 TCGA-EE-A2A0-06 12 7556307 7556307 C T CD163L1 Missense_Mutation p.G411E 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A2A0-06 12 80735754 80735754 G A OTOGL Missense_Mutation p.D1684N 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 12 86373960 86373960 G A MGAT4C Silent p.L182L 0.13 TCGA-EE-A2A0-06 12 9020829 9020829 G A A2ML1 Missense_Mutation p.V1313M 0.18 deleterious(0) probably_damaging(0.985) TCGA-EE-A2A0-06 12 99548191 99548191 G A ANKS1B Intron 0.18 TCGA-EE-A2A0-06 13 21557732 21557732 G A LATS2 Silent p.L705L 0.15 TCGA-EE-A2A0-06 13 39425984 39425984 G A FREM2 Missense_Mutation p.D2302N 0.24 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A2A0-06 13 58208594 58208594 C T PCDH17 Silent p.I638I 0.15 TCGA-EE-A2A0-06 13 72014780 72014780 G A DACH1 3'UTR 0.14 TCGA-EE-A2A0-06 13 97639130 97639130 G A OXGR1 Missense_Mutation p.T295I 0.18 tolerated(0.15) benign(0.436) TCGA-EE-A2A0-06 14 101458312 101458312 G A SNORD114-30 RNA 0.20 TCGA-EE-A2A0-06 14 101520696 101520696 C T MIR382 RNA 0.21 TCGA-EE-A2A0-06 14 107034925 107034925 C T IGHV5-51 Nonsense_Mutation p.W52* 0.25 TCGA-EE-A2A0-06 14 20586306 20586306 C T OR4K17 Silent p.I247I 0.09 TCGA-EE-A2A0-06 14 20665950 20665950 C T OR11G2 Silent p.F152F 0.26 TCGA-EE-A2A0-06 14 22217922 22217922 A T TRAV5 Missense_Mutation p.K91N 0.23 deleterious(0.01) possibly_damaging(0.596) TCGA-EE-A2A0-06 14 22434231 22434231 C T TRAV12-3 Missense_Mutation p.S95F 0.19 tolerated(0.05) possibly_damaging(0.86) TCGA-EE-A2A0-06 14 22475845 22475845 C T TRAV19 5'UTR 0.17 TCGA-EE-A2A0-06 14 25042969 25042969 G A CTSG Silent p.I214I 0.15 TCGA-EE-A2A0-06 14 30068894 30068894 G A PRKD1 Missense_Mutation p.P679S 0.14 tolerated(0.32) possibly_damaging(0.53) TCGA-EE-A2A0-06 14 36339685 36339685 C T BRMS1L 3'UTR 0.17 TCGA-EE-A2A0-06 14 45645534 45645534 C T FANCM Nonsense_Mutation p.Q1193* 0.14 TCGA-EE-A2A0-06 14 62462985 62462985 C T SYT16 Missense_Mutation p.S83F 0.10 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2A0-06 14 64421518 64421518 A G SYNE2 Silent p.R224R 0.11 TCGA-EE-A2A0-06 14 64898334 64898334 C T MTHFD1 Missense_Mutation p.H466Y 0.13 deleterious(0.05) benign(0.124) TCGA-EE-A2A0-06 14 73538437 73538437 C T RBM25 Missense_Mutation p.P30S 0.10 probably_damaging(0.994) TCGA-EE-A2A0-06 14 74823912 74823912 C T VRTN Silent p.S142S 0.15 TCGA-EE-A2A0-06 14 74825059 74825059 C T VRTN Missense_Mutation p.P525S 0.22 tolerated(0.43) benign(0.189) TCGA-EE-A2A0-06 14 74989552 74989552 C T LTBP2 Missense_Mutation p.G867E 0.18 deleterious(0) probably_damaging(0.92) TCGA-EE-A2A0-06 14 78063656 78063656 G A SPTLC2 Missense_Mutation p.P67L 0.13 deleterious(0) probably_damaging(0.951) TCGA-EE-A2A0-06 14 79433606 79433606 A C NRXN3 Missense_Mutation p.S572R 0.32 deleterious(0) probably_damaging(0.958) TCGA-EE-A2A0-06 14 81737163 81737163 C T STON2 Missense_Mutation p.E822K 0.17 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A0-06 14 90397973 90397973 G A EFCAB11 Missense_Mutation p.R108C 0.19 deleterious(0.01) benign(0.4) TCGA-EE-A2A0-06 14 92136247 92136247 G A CATSPERB Missense_Mutation p.P400S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 14 94708125 94708125 G A PPP4R4 Missense_Mutation p.G326E 0.26 tolerated(0.77) benign(0.177) TCGA-EE-A2A0-06 14 94756564 94756564 G A SERPINA10 Nonsense_Mutation p.Q123* 0.20 TCGA-EE-A2A0-06 14 95923642 95923642 C T SYNE3 Missense_Mutation p.E221K 0.15 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A2A0-06 15 101606336 101606336 G A LRRK1 Missense_Mutation p.M1898I 0.15 tolerated_low_confidence(0.28) benign(0) TCGA-EE-A2A0-06 15 101606337 101606337 G A LRRK1 Missense_Mutation p.D1899N 0.15 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A2A0-06 15 22369027 22369027 G A OR4M2 Missense_Mutation p.G151E 0.20 deleterious(0) probably_damaging(0.96) TCGA-EE-A2A0-06 15 23811728 23811728 G A MKRN3 Missense_Mutation p.D267N 0.13 deleterious(0) probably_damaging(0.945) TCGA-EE-A2A0-06 15 27193400 27193400 C T GABRA5 3'UTR 0.19 TCGA-EE-A2A0-06 15 57744449 57744449 G A CGNL1 Silent p.L672L 0.17 TCGA-EE-A2A0-06 15 71197007 71197007 C T LRRC49 Missense_Mutation p.S143L 0.14 tolerated(0.07) benign(0.001) TCGA-EE-A2A0-06 15 72030085 72030085 G A THSD4 Missense_Mutation p.G549S 0.26 tolerated(0.13) possibly_damaging(0.589) TCGA-EE-A2A0-06 15 78474918 78474918 C T ACSBG1 Missense_Mutation p.E262K 0.23 tolerated(0.54) benign(0.008) TCGA-EE-A2A0-06 15 89388750 89388750 G A ACAN Missense_Mutation p.D356N 0.17 tolerated(0.39) unknown(0) TCGA-EE-A2A0-06 16 1735481 1735481 G A HN1L Missense_Mutation p.G29E 0.35 deleterious(0) probably_damaging(0.968) TCGA-EE-A2A0-06 16 19195343 19195343 C T SYT17 Silent p.L275L 0.20 TCGA-EE-A2A0-06 16 22926721 22926721 G A HS3ST2 Silent p.L314L 0.15 TCGA-EE-A2A0-06 16 30365330 30365330 G A CD2BP2 Silent p.P89P 0.13 TCGA-EE-A2A0-06 16 48155664 48155664 C T ABCC12 Missense_Mutation p.E559K 0.12 deleterious(0.03) benign(0.27) TCGA-EE-A2A0-06 16 50349400 50349400 G A ADCY7 Missense_Mutation p.G1076E 0.17 deleterious(0) probably_damaging(0.935) TCGA-EE-A2A0-06 16 51173761 51173761 C T SALL1 Missense_Mutation p.G791D 0.25 deleterious(0) probably_damaging(0.957) TCGA-EE-A2A0-06 17 10399321 10399321 G A MYH1 Silent p.I1705I 0.18 TCGA-EE-A2A0-06 17 10451238 10451238 G A MYH2 5'UTR 0.24 TCGA-EE-A2A0-06 17 11998934 11998934 C T MAP2K4 Missense_Mutation p.L146F 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A0-06 17 17896150 17896150 G A LRRC48 Silent p.E172E 0.31 TCGA-EE-A2A0-06 17 18566006 18566006 G A ZNF286B Silent p.P271P 0.28 TCGA-EE-A2A0-06 17 18566007 18566007 G A ZNF286B Missense_Mutation p.P271L 0.26 deleterious(0) probably_damaging(0.919) TCGA-EE-A2A0-06 17 34079793 34079793 G A GAS2L2 Missense_Mutation p.S26L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 17 38813964 38813964 T A KRT222 Missense_Mutation p.K162M 0.12 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A2A0-06 17 39504771 39504771 C T KRT33A Silent p.K184K 0.17 TCGA-EE-A2A0-06 17 4391138 4391138 G A SPNS3 Silent p.L496L 0.08 TCGA-EE-A2A0-06 17 4391139 4391139 G A SPNS3 Missense_Mutation p.E497K 0.08 tolerated(0.06) possibly_damaging(0.864) TCGA-EE-A2A0-06 17 4692375 4692375 C T GLTPD2 Silent p.F23F 0.14 TCGA-EE-A2A0-06 17 4923917 4923917 C T KIF1C Silent p.A627A 0.08 TCGA-EE-A2A0-06 17 5012250 5012250 G A ZNF232 Missense_Mutation p.P199L 0.15 tolerated(0.06) possibly_damaging(0.851) TCGA-EE-A2A0-06 17 62018367 62018367 C T SCN4A Missense_Mutation p.D1759N 0.20 tolerated_low_confidence(0.27) benign(0.002) TCGA-EE-A2A0-06 17 63173900 63173900 G A RGS9 Silent p.P211P 0.12 TCGA-EE-A2A0-06 17 73720797 73720797 G A ITGB4 Missense_Mutation p.R5H 0.26 tolerated_low_confidence(0.77) benign(0) TCGA-EE-A2A0-06 17 8015480 8015480 G A ALOXE3 Missense_Mutation p.R371C 0.21 tolerated(0.2) benign(0.015) TCGA-EE-A2A0-06 18 28983456 28983456 C T DSG4 Missense_Mutation p.P499S 0.32 tolerated(0.96) benign(0.003) TCGA-EE-A2A0-06 18 29496318 29496318 A G TRAPPC8 Silent p.D178D 0.14 TCGA-EE-A2A0-06 18 42618613 42618613 G A SETBP1 Silent p.S1388S 0.22 TCGA-EE-A2A0-06 18 43526684 43526684 G A EPG5 Missense_Mutation p.S541F 0.14 deleterious(0) probably_damaging(0.983) TCGA-EE-A2A0-06 18 48256213 48256213 G A MAPK4 Missense_Mutation p.E585K 0.12 tolerated_low_confidence(0.09) benign(0.004) TCGA-EE-A2A0-06 18 50912421 50912421 T C DCC Missense_Mutation p.S790P 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A0-06 18 59483071 59483071 C T RNF152 3'UTR 0.18 TCGA-EE-A2A0-06 18 70526084 70526084 G A NETO1 Missense_Mutation p.S149L 0.25 tolerated(0.24) benign(0.075) TCGA-EE-A2A0-06 18 9396361 9396361 C T TWSG1 Missense_Mutation p.L103F 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 19 10127775 10127775 A C RDH8 Missense_Mutation p.E69A 0.17 tolerated(0.39) benign(0.132) TCGA-EE-A2A0-06 19 10265584 10265584 G T DNMT1 Silent p.I547I 0.22 TCGA-EE-A2A0-06 19 10265585 10265585 A C DNMT1 Missense_Mutation p.I547S 0.24 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A0-06 19 15072913 15072913 C T SLC1A6 Missense_Mutation p.G279E 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 19 16059877 16059877 C T OR10H4 Silent p.F20F 0.26 TCGA-EE-A2A0-06 19 16918517 16918517 C T NWD1 Missense_Mutation p.S1286F 0.15 tolerated(0.58) benign(0.121) TCGA-EE-A2A0-06 19 30936285 30936285 G A ZNF536 Missense_Mutation p.D606N 0.13 deleterious(0.02) benign(0.274) TCGA-EE-A2A0-06 19 36303159 36303159 C T PRODH2 Silent p.E205E 0.16 TCGA-EE-A2A0-06 19 38951143 38951143 G A RYR1 Missense_Mutation p.R830Q 0.18 benign(0.09) TCGA-EE-A2A0-06 19 38976536 38976536 C T RYR1 Silent p.F1747F 0.22 TCGA-EE-A2A0-06 19 43430700 43430700 C T PSG7 Missense_Mutation p.R293K 0.38 tolerated(0.09) possibly_damaging(0.871) TCGA-EE-A2A0-06 19 43575885 43575885 C T PSG2 Missense_Mutation p.E311K 0.20 tolerated(0.11) probably_damaging(0.949) TCGA-EE-A2A0-06 19 44352026 44352026 C T ZNF283 Missense_Mutation p.H425Y 0.22 deleterious(0) benign(0.115) TCGA-EE-A2A0-06 19 45668147 45668147 G A TRAPPC6A Silent p.F92F 0.13 TCGA-EE-A2A0-06 19 46201889 46201889 T G QPCTL Missense_Mutation p.S240A 0.27 tolerated(0.48) benign(0.128) TCGA-EE-A2A0-06 19 46307607 46307607 G A RSPH6A Missense_Mutation p.S519F 0.15 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2A0-06 19 49001505 49001505 C T LMTK3 Missense_Mutation p.E970K 0.21 unknown(0) TCGA-EE-A2A0-06 19 49254041 49254041 G A FUT1 Silent p.G166G 0.21 TCGA-EE-A2A0-06 19 49812295 49812295 G A SLC6A16 Missense_Mutation p.S356F 0.16 tolerated(0.05) benign(0.275) TCGA-EE-A2A0-06 19 50167994 50167994 G A IRF3 Silent p.F34F 0.17 TCGA-EE-A2A0-06 19 51330157 51330157 G A KLK15 Missense_Mutation p.T153I 0.28 deleterious(0.04) benign(0.029) TCGA-EE-A2A0-06 19 51559967 51559967 G A KLK13 Silent p.F237F 0.23 TCGA-EE-A2A0-06 19 51742799 51742799 T C CD33 Silent p.H317H 0.17 TCGA-EE-A2A0-06 19 52249600 52249600 G A FPR1 Silent p.I216I 0.22 TCGA-EE-A2A0-06 19 52496214 52496214 C T ZNF615 Silent p.E716E 0.26 TCGA-EE-A2A0-06 19 54779819 54779819 C T LILRB2 Missense_Mutation p.E546K 0.14 tolerated(0.07) benign(0.01) TCGA-EE-A2A0-06 19 55106668 55106668 C T LILRA1 Silent p.F154F 0.21 TCGA-EE-A2A0-06 19 55527069 55527069 C T GP6 Missense_Mutation p.E253K 0.21 deleterious_low_confidence(0.02) benign(0.135) TCGA-EE-A2A0-06 19 57640963 57640963 C T USP29 Missense_Mutation p.P307L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 19 6535044 6535044 C T TNFSF9 Silent p.I244I 0.19 TCGA-EE-A2A0-06 19 6693001 6693001 G A C3 Silent p.I1108I 0.26 TCGA-EE-A2A0-06 19 8188693 8188693 G A FBN3 Silent p.F977F 0.14 TCGA-EE-A2A0-06 19 8616665 8616665 C T MYO1F Missense_Mutation p.V244M 0.20 deleterious(0) probably_damaging(0.98) TCGA-EE-A2A0-06 19 8616666 8616666 C T MYO1F Silent p.Q243Q 0.19 TCGA-EE-A2A0-06 19 9012794 9012794 C T MUC16 Missense_Mutation p.E12884K 0.24 probably_damaging(0.973) TCGA-EE-A2A0-06 19 9070360 9070360 C T MUC16 Missense_Mutation p.E5696K 0.23 unknown(0) TCGA-EE-A2A0-06 1 103471428 103471428 C T COL11A1 Missense_Mutation p.G604E 0.15 unknown(0) TCGA-EE-A2A0-06 1 1147431 1147431 C T TNFRSF4 Silent p.Q175Q 0.18 TCGA-EE-A2A0-06 1 115223028 115223028 G A AMPD1 Missense_Mutation p.H240Y 0.18 tolerated(0.5) benign(0) TCGA-EE-A2A0-06 1 120496233 120496233 G A NOTCH2 Silent p.C766C 0.18 TCGA-EE-A2A0-06 1 12057476 12057476 C T MFN2 Silent p.D199D 0.20 TCGA-EE-A2A0-06 1 12854441 12854441 G A PRAMEF1 Missense_Mutation p.R222K 0.11 tolerated(0.1) benign(0.255) TCGA-EE-A2A0-06 1 12921104 12921104 G A PRAMEF2 Missense_Mutation p.E299K 0.16 tolerated(0.06) benign(0.385) TCGA-EE-A2A0-06 1 143906082 143906082 G A FAM72D Silent p.S95S 0.14 TCGA-EE-A2A0-06 1 143906083 143906083 G C FAM72D Missense_Mutation p.S95C 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A0-06 1 151372152 151372152 C T PSMB4 Missense_Mutation p.S30F 0.13 deleterious(0.03) benign(0.059) TCGA-EE-A2A0-06 1 152279804 152279804 C T FLG Missense_Mutation p.D2520N 0.16 possibly_damaging(0.53) TCGA-EE-A2A0-06 1 152284394 152284394 C T FLG Missense_Mutation p.E990K 0.15 possibly_damaging(0.702) TCGA-EE-A2A0-06 1 152287341 152287341 C T FLG Intron 0.39 TCGA-EE-A2A0-06 1 154245143 154245143 C A HAX1 5'UTR 0.36 TCGA-EE-A2A0-06 1 154987923 154987923 C T ZBTB7B Missense_Mutation p.P297S 0.18 tolerated(0.15) probably_damaging(0.932) TCGA-EE-A2A0-06 1 155253895 155253895 C T HCN3 Missense_Mutation p.P280L 0.13 tolerated(0.14) benign(0.105) TCGA-EE-A2A0-06 1 155288151 155288151 C G FDPS Intron 0.17 TCGA-EE-A2A0-06 1 155935158 155935158 T A ARHGEF2 Silent p.S172S 0.20 TCGA-EE-A2A0-06 1 159410488 159410488 G A OR10J1 Missense_Mutation p.A314T 0.23 tolerated(0.23) benign(0.089) TCGA-EE-A2A0-06 1 159778843 159778843 C T FCRL6 Missense_Mutation p.P138S 0.15 tolerated(0.11) benign(0.254) TCGA-EE-A2A0-06 1 160054220 160054220 G A KCNJ9 Missense_Mutation p.E134K 0.21 deleterious(0.04) possibly_damaging(0.732) TCGA-EE-A2A0-06 1 161953687 161953687 G A OLFML2B Silent p.F677F 0.15 TCGA-EE-A2A0-06 1 162270496 162270496 G A NOS1AP Missense_Mutation p.R115K 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2A0-06 1 169394155 169394155 T C CCDC181 Missense_Mutation p.N4S 0.17 tolerated_low_confidence(0.2) benign(0.024) TCGA-EE-A2A0-06 1 171178096 171178096 C T FMO2 3'UTR 0.19 TCGA-EE-A2A0-06 1 175293520 175293520 C T TNR Missense_Mutation p.G1310E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 1 176668661 176668661 G A PAPPA2 Missense_Mutation p.D1058N 0.21 tolerated(0.1) benign(0.167) TCGA-EE-A2A0-06 1 179087822 179087822 C T ABL2 Missense_Mutation p.E375K 0.13 tolerated(0.12) possibly_damaging(0.612) TCGA-EE-A2A0-06 1 182635130 182635130 G A RGS8 Missense_Mutation p.S74F 0.18 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2A0-06 1 183616792 183616792 C T APOBEC4 3'UTR 0.14 TCGA-EE-A2A0-06 1 186863340 186863340 C T PLA2G4A Silent p.N125N 0.18 TCGA-EE-A2A0-06 1 190195314 190195314 G A BRINP3 Missense_Mutation p.P287S 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A0-06 1 209879272 209879272 G A HSD11B1 Missense_Mutation p.E69K 0.19 tolerated(0.64) benign(0.023) TCGA-EE-A2A0-06 1 216465615 216465615 G A USH2A Missense_Mutation p.S581F 0.19 probably_damaging(0.932) TCGA-EE-A2A0-06 1 231678224 231678224 T C TSNAX Intron 0.19 TCGA-EE-A2A0-06 1 240635710 240635710 G A FMN2 Missense_Mutation p.G1700E 0.18 benign(0.035) TCGA-EE-A2A0-06 1 245006512 245006512 G A COX20 3'UTR 0.20 TCGA-EE-A2A0-06 1 245006513 245006513 T A COX20 3'UTR 0.20 TCGA-EE-A2A0-06 1 247614655 247614655 G A OR2B11 Silent p.F210F 0.09 TCGA-EE-A2A0-06 1 32622952 32622952 T G KPNA6 Missense_Mutation p.S79R 0.13 tolerated(0.39) benign(0.008) TCGA-EE-A2A0-06 1 32796205 32796205 C T HDAC1 Silent p.F252F 0.19 TCGA-EE-A2A0-06 1 38034558 38034558 T C GNL2 Missense_Mutation p.N588D 0.19 tolerated(0.89) benign(0.001) TCGA-EE-A2A0-06 1 47399643 47399643 G A CYP4A11 Silent p.F399F 0.18 TCGA-EE-A2A0-06 1 47407007 47407007 C T CYP4A11 Silent p.K33K 0.17 TCGA-EE-A2A0-06 1 52992014 52992014 A G ZCCHC11 5'UTR 0.30 TCGA-EE-A2A0-06 1 57002716 57002716 C T PPAP2B Missense_Mutation p.D70N 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 1 57173338 57173338 G A PRKAA2 Missense_Mutation p.M537I 0.17 tolerated(0.15) benign(0.002) TCGA-EE-A2A0-06 1 6206310 6206310 C T CHD5 Silent p.K588K 0.19 TCGA-EE-A2A0-06 1 6659367 6659367 G A KLHL21 Silent p.A389A 0.27 TCGA-EE-A2A0-06 1 67452162 67452162 C T MIER1 3'Flank 0.14 TCGA-EE-A2A0-06 1 70493974 70493974 C T LRRC7 Missense_Mutation p.P601S 0.20 tolerated(0.37) benign(0.178) TCGA-EE-A2A0-06 1 70742476 70742476 C T ANKRD13C Missense_Mutation p.E423K 0.19 deleterious(0.04) benign(0.201) TCGA-EE-A2A0-06 1 79383561 79383561 C T ELTD1 Missense_Mutation p.G546R 0.18 deleterious(0) probably_damaging(0.952) TCGA-EE-A2A0-06 1 79383617 79383617 C T ELTD1 Missense_Mutation p.G527E 0.19 tolerated(0.14) probably_damaging(1) TCGA-EE-A2A0-06 1 8390930 8390930 C T SLC45A1 Silent p.I459I 0.19 TCGA-EE-A2A0-06 1 89843692 89843692 G T GBP6 Missense_Mutation p.A117S 0.16 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A2A0-06 1 90493297 90493297 C T ZNF326 3'UTR 0.21 TCGA-EE-A2A0-06 1 92696959 92696959 T C C1orf146 5'UTR 0.10 TCGA-EE-A2A0-06 1 97564144 97564144 G A DPYD Silent p.I889I 0.27 TCGA-EE-A2A0-06 20 21687451 21687451 T G PAX1 Missense_Mutation p.L221R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 20 29976901 29976901 C T DEFB119 Missense_Mutation p.G65E 0.12 tolerated(0.27) benign(0.437) TCGA-EE-A2A0-06 20 3210286 3210286 G A SLC4A11 Silent p.A585A 0.17 TCGA-EE-A2A0-06 20 33596537 33596537 C A TRPC4AP Missense_Mutation p.D509Y 0.21 tolerated(0.05) probably_damaging(0.972) TCGA-EE-A2A0-06 20 34618533 34618533 A G CNBD2 Missense_Mutation p.K561R 0.14 tolerated(0.25) benign(0.19) TCGA-EE-A2A0-06 20 35748963 35748963 G A MROH8 Missense_Mutation p.L752F 0.26 tolerated(0.14) benign(0.107) TCGA-EE-A2A0-06 20 43804764 43804764 C T PI3 Silent p.F114F 0.17 TCGA-EE-A2A0-06 20 44259522 44259522 C T WFDC10A Silent p.S35S 0.18 TCGA-EE-A2A0-06 20 45131203 45131203 G A ZNF334 Missense_Mutation p.H259Y 0.21 tolerated(0.15) possibly_damaging(0.672) TCGA-EE-A2A0-06 20 45354961 45354961 C T SLC2A10 Missense_Mutation p.P429L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 20 55100848 55100848 C T GCNT7 5'UTR 0.18 TCGA-EE-A2A0-06 20 57769744 57769744 C T ZNF831 Missense_Mutation p.P1224S 0.23 tolerated(0.54) benign(0.023) TCGA-EE-A2A0-06 20 60498508 60498508 G A CDH4 Splice_Site p.X459_splice 0.12 TCGA-EE-A2A0-06 20 61512000 61512000 T C DIDO1 Missense_Mutation p.N1770D 0.11 benign(0.108) TCGA-EE-A2A0-06 20 61834136 61834136 G A YTHDF1 Silent p.L386L 0.17 TCGA-EE-A2A0-06 20 62370075 62370075 C T LIME1 Missense_Mutation p.T237I 0.29 tolerated(0.36) benign(0.008) TCGA-EE-A2A0-06 20 62370076 62370076 C T LIME1 Silent p.T237T 0.27 TCGA-EE-A2A0-06 21 10942740 10942740 C T TPTE Missense_Mutation p.G234E 0.04 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A2A0-06 21 30933998 30933998 G A GRIK1 Missense_Mutation p.T768I 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 21 35209350 35209350 C T ITSN1 Intron 0.07 TCGA-EE-A2A0-06 21 39580244 39580244 G A DSCR10 RNA 0.17 TCGA-EE-A2A0-06 21 40590094 40590094 C G BRWD1 Missense_Mutation p.V1215L 0.10 tolerated(0.75) benign(0.389) TCGA-EE-A2A0-06 21 41496187 41496187 G A DSCAM Missense_Mutation p.P1211S 0.29 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2A0-06 21 41668096 41668096 G A DSCAM Missense_Mutation p.P690S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 21 43786599 43786599 G A TFF1 Silent p.A2A 0.16 TCGA-EE-A2A0-06 21 47545201 47545201 G A COL6A2 Missense_Mutation p.V598M 0.09 tolerated(0.08) probably_damaging(0.948) TCGA-EE-A2A0-06 22 20126755 20126755 C T ZDHHC8 Missense_Mutation p.P48L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A0-06 22 21348031 21348031 C T LZTR1 Silent p.F447F 0.19 TCGA-EE-A2A0-06 22 24109663 24109663 T A CHCHD10 Silent p.A53A 0.36 TCGA-EE-A2A0-06 22 26887513 26887513 C T SRRD Missense_Mutation p.P299S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 22 39178680 39178680 G A DNAL4 Silent p.F19F 0.17 TCGA-EE-A2A0-06 22 45996279 45996279 C T FBLN1 Nonsense_Mutation p.R689* 0.15 TCGA-EE-A2A0-06 2 102805734 102805734 A C IL1RL2 Missense_Mutation p.E86A 0.24 tolerated(0.51) benign(0.002) TCGA-EE-A2A0-06 2 105956091 105956091 G A C2orf49 Missense_Mutation p.D51N 0.12 tolerated(0.08) possibly_damaging(0.849) TCGA-EE-A2A0-06 2 108499184 108499184 A C RGPD4 Silent p.A1707A 0.12 TCGA-EE-A2A0-06 2 110881626 110881626 G A NPHP1 Silent p.F648F 0.11 TCGA-EE-A2A0-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.12 TCGA-EE-A2A0-06 2 120020656 120020656 C T STEAP3 Silent p.L413L 0.18 TCGA-EE-A2A0-06 2 131976345 131976345 G A POTEE Missense_Mutation p.D124N 0.09 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-EE-A2A0-06 2 166611537 166611537 T G GALNT3 Missense_Mutation p.K477Q 0.12 deleterious(0) benign(0.069) TCGA-EE-A2A0-06 2 167056155 167056155 T C SCN9A Missense_Mutation p.N1654S 0.23 tolerated(0.15) benign(0.161) TCGA-EE-A2A0-06 2 167327137 167327137 G A SCN7A Missense_Mutation p.P218S 0.27 tolerated(1) benign(0.231) TCGA-EE-A2A0-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.16 probably_damaging(0.999) TCGA-EE-A2A0-06 2 168102636 168102636 G A XIRP2 Silent p.G1578G 0.09 TCGA-EE-A2A0-06 2 168105419 168105419 G A XIRP2 Missense_Mutation p.G2506E 0.17 benign(0.001) TCGA-EE-A2A0-06 2 179432542 179432542 G A TTN Missense_Mutation p.T26106I 0.19 TCGA-EE-A2A0-06 2 179441775 179441775 G C TTN Missense_Mutation p.S23096C 0.20 TCGA-EE-A2A0-06 2 179472548 179472548 C T TTN Missense_Mutation p.G17656R 0.20 TCGA-EE-A2A0-06 2 179474943 179474943 G A TTN Silent p.L17104L 0.19 TCGA-EE-A2A0-06 2 179575439 179575439 C T TTN Missense_Mutation p.G9462E 0.20 TCGA-EE-A2A0-06 2 179603011 179603011 G A TTN Silent p.I4723I 0.20 TCGA-EE-A2A0-06 2 179641337 179641337 G A TTN Missense_Mutation p.R1752C 0.24 TCGA-EE-A2A0-06 2 182360613 182360613 G A ITGA4 Missense_Mutation p.D497N 0.13 tolerated(1) benign(0.004) TCGA-EE-A2A0-06 2 183104855 183104855 G C PDE1A Missense_Mutation p.A127G 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2A0-06 2 186673115 186673115 G A FSIP2 Missense_Mutation p.R6450K 0.24 benign(0.014) TCGA-EE-A2A0-06 2 196750931 196750931 C T DNAH7 Missense_Mutation p.M1824I 0.09 tolerated(0.26) benign(0.002) TCGA-EE-A2A0-06 2 197597238 197597238 T A CCDC150 Missense_Mutation p.N1086K 0.20 deleterious(0.03) benign(0.235) TCGA-EE-A2A0-06 2 207175496 207175496 C T ZDBF2 Missense_Mutation p.H2082Y 0.18 tolerated(0.07) benign(0.152) TCGA-EE-A2A0-06 2 212566814 212566814 C T ERBB4 Missense_Mutation p.G456E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 2 219204769 219204769 A G PNKD Missense_Mutation p.I124V 0.13 tolerated(0.52) benign(0.054) TCGA-EE-A2A0-06 2 219525750 219525750 C T BCS1L Missense_Mutation p.P14S 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2A0-06 2 219896344 219896344 C T CCDC108 Missense_Mutation p.E228K 0.18 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A0-06 2 220073690 220073690 C T ZFAND2B Intron 0.18 TCGA-EE-A2A0-06 2 228884803 228884803 T A SPHKAP Missense_Mutation p.E256V 0.19 tolerated(0.05) possibly_damaging(0.616) TCGA-EE-A2A0-06 2 234545582 234545582 G A UGT1A10 Silent p.K138K 0.15 TCGA-EE-A2A0-06 2 242046123 242046123 G A PASK Missense_Mutation p.S1284F 0.18 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2A0-06 2 31168651 31168651 C T GALNT14 Missense_Mutation p.G252E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 2 31168652 31168652 C T GALNT14 Missense_Mutation p.G252R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 2 32626358 32626358 A G BIRC6 Missense_Mutation p.I388V 0.16 possibly_damaging(0.891) TCGA-EE-A2A0-06 2 43922289 43922289 T A PLEKHH2 Nonsense_Mutation p.L143* 0.11 TCGA-EE-A2A0-06 2 43922292 43922292 A G PLEKHH2 Missense_Mutation p.E144G 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A2A0-06 2 44079738 44079738 G A ABCG8 Missense_Mutation p.G232E 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2A0-06 2 89246982 89246982 C T IGKV1-5 Missense_Mutation p.G63E 0.29 deleterious(0.02) benign(0.414) TCGA-EE-A2A0-06 2 89417258 89417258 G A IGKV1-17 Silent p.F17F 0.14 TCGA-EE-A2A0-06 2 89987047 89987047 G A IGKV2D-29 Missense_Mutation p.V110I 0.09 tolerated(0.17) benign(0.046) TCGA-EE-A2A0-06 2 96048147 96048147 C T KCNIP3 Missense_Mutation p.S193F 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A0-06 2 99251711 99251711 C T MGAT4A Missense_Mutation p.R481Q 0.11 tolerated(0.24) benign(0.001) TCGA-EE-A2A0-06 2 99695146 99695146 G A TSGA10 Silent p.S286S 0.13 TCGA-EE-A2A0-06 2 99695147 99695147 G A TSGA10 Missense_Mutation p.S286F 0.13 tolerated(0.05) possibly_damaging(0.885) TCGA-EE-A2A0-06 3 102187915 102187915 C T ZPLD1 Missense_Mutation p.S306F 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 3 108572768 108572768 G A TRAT1 3'UTR 0.22 TCGA-EE-A2A0-06 3 112324569 112324569 C T CCDC80 Missense_Mutation p.V850M 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A0-06 3 121825261 121825261 C T CD86 Missense_Mutation p.S206L 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A2A0-06 3 121828152 121828152 G A CD86 Nonsense_Mutation p.W248* 0.12 TCGA-EE-A2A0-06 3 124390609 124390609 C T KALRN Missense_Mutation p.S360F 0.17 deleterious(0.04) possibly_damaging(0.794) TCGA-EE-A2A0-06 3 130289734 130289734 A G COL6A6 Missense_Mutation p.Y825C 0.27 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A0-06 3 133475818 133475818 G A TF Missense_Mutation p.E279K 0.11 tolerated(0.12) probably_damaging(0.991) TCGA-EE-A2A0-06 3 138038353 138038353 G A NME9 Silent p.I32I 0.15 TCGA-EE-A2A0-06 3 14212034 14212034 G A XPC Missense_Mutation p.L106F 0.17 tolerated_low_confidence(0.49) benign(0.275) TCGA-EE-A2A0-06 3 148884866 148884866 T C HPS3 Missense_Mutation p.F879L 0.05 tolerated(0.78) probably_damaging(0.916) TCGA-EE-A2A0-06 3 150840632 150840632 G A MED12L Silent p.T89T 0.17 TCGA-EE-A2A0-06 3 150931647 150931647 G A P2RY14 Missense_Mutation p.A153V 0.28 deleterious(0) benign(0.032) TCGA-EE-A2A0-06 3 164777087 164777087 C T SI Missense_Mutation p.D383N 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 3 168845679 168845679 C T MECOM Silent p.T137T 0.14 TCGA-EE-A2A0-06 3 172241118 172241118 G A TNFSF10 Silent p.I19I 0.22 TCGA-EE-A2A0-06 3 182789020 182789020 G A MCCC1 Missense_Mutation p.A206V 0.14 deleterious(0.01) possibly_damaging(0.802) TCGA-EE-A2A0-06 3 183994287 183994287 G A ECE2 Intron 0.24 TCGA-EE-A2A0-06 3 193158418 193158418 G A ATP13A4 Silent p.I816I 0.19 TCGA-EE-A2A0-06 3 195474004 195474004 G C MUC4 3'UTR 0.17 TCGA-EE-A2A0-06 3 196242167 196242167 C T SMCO1 5'UTR 0.32 TCGA-EE-A2A0-06 3 196842847 196842847 C T DLG1 Missense_Mutation p.G498E 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A0-06 3 3078962 3078962 G A CNTN4 Missense_Mutation p.G681E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 3 33216549 33216549 G A SUSD5 Missense_Mutation p.P143S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 3 35731618 35731618 C T ARPP21 Silent p.F177F 0.10 TCGA-EE-A2A0-06 3 36872672 36872672 G A TRANK1 Missense_Mutation p.S2757F 0.22 tolerated(0.07) benign(0.009) TCGA-EE-A2A0-06 3 36897977 36897977 C T TRANK1 Missense_Mutation p.G1035D 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 3 51971266 51971266 G A RRP9 Silent p.V153V 0.25 TCGA-EE-A2A0-06 3 56468689 56468689 G A ERC2 Missense_Mutation p.S116L 0.19 deleterious(0.04) benign(0.101) TCGA-EE-A2A0-06 3 62535619 62535619 C T CADPS Missense_Mutation p.G642E 0.21 tolerated(0.08) probably_damaging(0.931) TCGA-EE-A2A0-06 3 77612474 77612474 C T ROBO2 Missense_Mutation p.A575V 0.22 deleterious(0) possibly_damaging(0.82) TCGA-EE-A2A0-06 3 97868478 97868478 C T OR5H14 Silent p.I83I 0.14 TCGA-EE-A2A0-06 4 100201307 100201307 G A ADH1A Missense_Mutation p.L320F 0.22 tolerated(1) benign(0.002) TCGA-EE-A2A0-06 4 104510774 104510774 G A TACR3 3'UTR 0.26 TCGA-EE-A2A0-06 4 119951428 119951428 G A SYNPO2 Missense_Mutation p.E500K 0.28 deleterious(0.01) benign(0.306) TCGA-EE-A2A0-06 4 126411438 126411438 T A FAT4 Missense_Mutation p.H4487Q 0.10 possibly_damaging(0.451) TCGA-EE-A2A0-06 4 126411478 126411478 C T FAT4 Missense_Mutation p.P4501S 0.11 probably_damaging(0.998) TCGA-EE-A2A0-06 4 128732723 128732723 G A HSPA4L Missense_Mutation p.E504K 0.16 tolerated(0.18) benign(0.141) TCGA-EE-A2A0-06 4 141578693 141578693 G A TBC1D9 Missense_Mutation p.T732I 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2A0-06 4 145629453 145629453 G A HHIP Missense_Mutation p.D431N 0.16 tolerated(1) benign(0.003) TCGA-EE-A2A0-06 4 154625162 154625162 G A TLR2 Missense_Mutation p.S368N 0.22 deleterious(0.05) possibly_damaging(0.784) TCGA-EE-A2A0-06 4 154625275 154625275 G A TLR2 Missense_Mutation p.G406R 0.20 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A0-06 4 154625276 154625276 G A TLR2 Missense_Mutation p.G406E 0.20 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A0-06 4 156711040 156711040 C T GUCY1B3 Missense_Mutation p.H158Y 0.16 tolerated(0.16) benign(0.019) TCGA-EE-A2A0-06 4 164272362 164272362 C T NPY5R Missense_Mutation p.P313S 0.21 tolerated(0.1) benign(0.227) TCGA-EE-A2A0-06 4 164393595 164393595 G A TKTL2 Missense_Mutation p.S431F 0.26 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2A0-06 4 175898057 175898057 G A ADAM29 Missense_Mutation p.E461K 0.17 tolerated(0.4) possibly_damaging(0.792) TCGA-EE-A2A0-06 4 187004730 187004730 C T TLR3 Silent p.F630F 0.18 TCGA-EE-A2A0-06 4 189012525 189012525 G A TRIML2 3'UTR 0.28 TCGA-EE-A2A0-06 4 40778237 40778237 C T NSUN7 Missense_Mutation p.P333S 0.16 tolerated(0.7) benign(0.014) TCGA-EE-A2A0-06 4 44176896 44176896 G A KCTD8 Nonsense_Mutation p.Q445* 0.12 TCGA-EE-A2A0-06 4 47427754 47427754 G A GABRB1 Missense_Mutation p.E382K 0.10 tolerated(0.17) benign(0.014) TCGA-EE-A2A0-06 4 56766022 56766022 C T EXOC1 Missense_Mutation p.S770F 0.14 tolerated(0.32) possibly_damaging(0.544) TCGA-EE-A2A0-06 4 69101955 69101955 G A TMPRSS11B Missense_Mutation p.H52Y 0.13 tolerated(0.9) benign(0.013) TCGA-EE-A2A0-06 4 69687989 69687989 G A UGT2B10 Missense_Mutation p.E290K 0.12 deleterious(0.01) benign(0.096) TCGA-EE-A2A0-06 4 70460968 70460968 C T UGT2A1 Splice_Site p.X499_splice 0.11 TCGA-EE-A2A0-06 4 8229893 8229893 C T SH3TC1 Silent p.I824I 0.24 TCGA-EE-A2A0-06 4 85414693 85414693 G A NKX6-1 Nonsense_Mutation p.Q285* 0.18 TCGA-EE-A2A0-06 4 90170427 90170427 G A GPRIN3 Missense_Mutation p.P279S 0.13 tolerated(0.21) benign(0.022) TCGA-EE-A2A0-06 4 91230693 91230693 C T CCSER1 Missense_Mutation p.P420S 0.18 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-EE-A2A0-06 4 94137889 94137889 G A GRID2 Missense_Mutation p.E264K 0.13 deleterious(0.01) possibly_damaging(0.562) TCGA-EE-A2A0-06 4 95147328 95147328 C T SMARCAD1 Silent p.F83F 0.20 TCGA-EE-A2A0-06 5 111066639 111066639 G A NREP Silent p.I106I 0.21 TCGA-EE-A2A0-06 5 131410554 131410554 G A CSF2 Missense_Mutation p.G85S 0.32 deleterious(0.05) probably_damaging(0.938) TCGA-EE-A2A0-06 5 131530617 131530617 A C P4HA2 Splice_Site p.X513_splice 0.19 TCGA-EE-A2A0-06 5 13735349 13735349 G A DNAH5 Silent p.A3884A 0.31 TCGA-EE-A2A0-06 5 140236203 140236203 C T PCDHA10 Silent p.F190F 0.30 TCGA-EE-A2A0-06 5 140257349 140257349 G A PCDHA12 Silent p.P764P 0.29 TCGA-EE-A2A0-06 5 140751469 140751469 C T PCDHGB3 Missense_Mutation p.S503F 0.17 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A2A0-06 5 160071175 160071175 C T ATP10B Missense_Mutation p.E280K 0.16 deleterious(0.01) benign(0.262) TCGA-EE-A2A0-06 5 160761781 160761781 A C GABRB2 Silent p.A270A 0.17 TCGA-EE-A2A0-06 5 167674702 167674702 G A TENM2 Missense_Mutation p.R2253Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A0-06 5 171638825 171638825 G T UBTD2 3'UTR 0.08 TCGA-EE-A2A0-06 5 178409990 178409990 C T GRM6 Missense_Mutation p.G786D 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A0-06 5 179201702 179201702 C T MAML1 Nonsense_Mutation p.Q959* 0.16 TCGA-EE-A2A0-06 5 26890594 26890594 C T CDH9 Missense_Mutation p.A445T 0.15 tolerated(0.27) benign(0.001) TCGA-EE-A2A0-06 5 35628639 35628639 G A SPEF2 Missense_Mutation p.D46N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 5 35814589 35814589 G A SPEF2 Silent p.R1801R 0.21 TCGA-EE-A2A0-06 5 35814606 35814606 G A SPEF2 Missense_Mutation p.G1807E 0.20 deleterious(0.02) possibly_damaging(0.634) TCGA-EE-A2A0-06 5 35910179 35910179 T A CAPSL Splice_Site p.X106_splice 0.38 TCGA-EE-A2A0-06 5 35965498 35965498 G A UGT3A1 Missense_Mutation p.P278L 0.13 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2A0-06 5 35965499 35965499 G A UGT3A1 Missense_Mutation p.P278S 0.12 tolerated(0.06) possibly_damaging(0.777) TCGA-EE-A2A0-06 5 36251594 36251594 G A RANBP3L Missense_Mutation p.A417V 0.36 tolerated(0.15) benign(0.11) TCGA-EE-A2A0-06 5 38886146 38886146 C T OSMR Missense_Mutation p.S282F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 5 39285194 39285194 C T C9 3'UTR 0.37 TCGA-EE-A2A0-06 5 39311479 39311479 C T C9 Missense_Mutation p.E291K 0.28 tolerated(0.49) benign(0.05) TCGA-EE-A2A0-06 5 40998744 40998744 C T MROH2B Missense_Mutation p.E1541K 0.19 tolerated(0.14) benign(0.026) TCGA-EE-A2A0-06 5 90059211 90059211 C T GPR98 Silent p.V4070V 0.15 TCGA-EE-A2A0-06 6 111695369 111695369 T C REV3L Missense_Mutation p.I1397V 0.26 tolerated_low_confidence(0.86) benign(0) TCGA-EE-A2A0-06 6 123318999 123318999 C T CLVS2 Missense_Mutation p.T26M 0.17 tolerated(0.12) possibly_damaging(0.833) TCGA-EE-A2A0-06 6 144262538 144262538 G A PLAGL1 3'UTR 0.25 TCGA-EE-A2A0-06 6 155451108 155451108 G A TIAM2 Missense_Mutation p.D251N 0.16 deleterious(0) probably_damaging(0.963) TCGA-EE-A2A0-06 6 159188497 159188497 G A EZR Silent p.H464H 0.14 TCGA-EE-A2A0-06 6 159188498 159188498 T A EZR Missense_Mutation p.H464L 0.16 tolerated(0.46) benign(0.002) TCGA-EE-A2A0-06 6 159642639 159642639 C T FNDC1 Missense_Mutation p.S226F 0.14 deleterious(0) unknown(0) TCGA-EE-A2A0-06 6 27925589 27925589 G A OR2B6 Missense_Mutation p.E191K 0.22 deleterious(0) benign(0.099) TCGA-EE-A2A0-06 6 3137593 3137593 C T BPHL Intron 0.13 TCGA-EE-A2A0-06 6 32006367 32006367 C T CYP21A2 Silent p.F56F 0.29 TCGA-EE-A2A0-06 6 38652268 38652268 G A GLO1 Missense_Mutation p.P64S 0.21 tolerated(0.06) benign(0.127) TCGA-EE-A2A0-06 6 38957859 38957861 AAC - DNAH8 In_Frame_Del p.K4158_T4159delinsN 0.14 TCGA-EE-A2A0-06 6 44274093 44274093 G A AARS2 Silent p.F408F 0.18 TCGA-EE-A2A0-06 6 46821612 46821612 G A GPR116 3'UTR 0.25 TCGA-EE-A2A0-06 6 47649017 47649017 C T GPR111 Missense_Mutation p.A241V 0.14 tolerated(0.66) benign(0.343) TCGA-EE-A2A0-06 6 49754065 49754065 C T PGK2 Missense_Mutation p.R279K 0.14 tolerated(1) benign(0.001) TCGA-EE-A2A0-06 6 56035923 56035923 G A COL21A1 Missense_Mutation p.S215F 0.17 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A0-06 6 56473871 56473871 G A DST Intron 0.15 TCGA-EE-A2A0-06 6 57048731 57048731 G A BAG2 Missense_Mutation p.D127N 0.23 tolerated(0.17) benign(0.204) TCGA-EE-A2A0-06 6 74104798 74104798 C T DDX43 Missense_Mutation p.P57L 0.22 tolerated(0.72) benign(0.001) TCGA-EE-A2A0-06 6 75836118 75836118 C A COL12A1 Missense_Mutation p.D2137Y 0.25 probably_damaging(1) TCGA-EE-A2A0-06 6 84025066 84025066 C T ME1 Missense_Mutation p.D223N 0.20 deleterious(0.03) benign(0.109) TCGA-EE-A2A0-06 6 87726062 87726062 C T HTR1E Missense_Mutation p.S337F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 7 100675922 100675922 G A MUC17 Missense_Mutation p.E409K 0.32 probably_damaging(0.931) TCGA-EE-A2A0-06 7 100679607 100679607 C T MUC17 Missense_Mutation p.P1637L 0.14 possibly_damaging(0.889) TCGA-EE-A2A0-06 7 100686452 100686452 C T MUC17 Missense_Mutation p.P3919S 0.16 benign(0) TCGA-EE-A2A0-06 7 103206733 103206733 C T RELN Missense_Mutation p.G1625E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 7 112423923 112423923 G A TMEM168 Missense_Mutation p.H320Y 0.17 tolerated(0.4) benign(0.201) TCGA-EE-A2A0-06 7 116381018 116381018 G A MET Missense_Mutation p.R547Q 0.33 tolerated(0.05) benign(0.007) TCGA-EE-A2A0-06 7 117060298 117060298 G A ASZ1 Missense_Mutation p.S120F 0.17 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2A0-06 7 129910554 129910554 G A CPA2 Missense_Mutation p.E104K 0.26 tolerated(0.3) benign(0.001) TCGA-EE-A2A0-06 7 134849776 134849776 A C TMEM140 3'UTR 0.34 TCGA-EE-A2A0-06 7 138738293 138738293 G T ZC3HAV1 Missense_Mutation p.L785I 0.26 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A0-06 7 140453145 140453145 A T BRAF Missense_Mutation p.L597Q 0.37 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2A0-06 7 140494149 140494149 G A BRAF Missense_Mutation p.P367S 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A0-06 7 142124399 142124399 G A TRBV6-8 Missense_Mutation p.P27S 0.41 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A2A0-06 7 148526879 148526879 T A EZH2 Missense_Mutation p.D142V 0.36 deleterious(0) possibly_damaging(0.667) TCGA-EE-A2A0-06 7 1527064 1527064 G A INTS1 Silent p.P846P 0.18 TCGA-EE-A2A0-06 7 156480769 156480769 G A LMBR1 Nonsense_Mutation p.R448* 0.35 TCGA-EE-A2A0-06 7 20795278 20795278 C T ABCB5 3'UTR 0.19 TCGA-EE-A2A0-06 7 37780891 37780891 G A GPR141 Nonsense_Mutation p.W299* 0.10 TCGA-EE-A2A0-06 7 37780892 37780892 G A GPR141 Nonsense_Mutation p.W299* 0.10 TCGA-EE-A2A0-06 7 53103501 53103501 C T POM121L12 Missense_Mutation p.P46L 0.09 deleterious(0) probably_damaging(0.958) TCGA-EE-A2A0-06 7 65157824 65157824 G A INTS4L2 Splice_Site 0.21 TCGA-EE-A2A0-06 7 72361201 72361201 C T POM121 5'UTR 0.20 TCGA-EE-A2A0-06 7 75625743 75625743 C T STYXL1 3'UTR 0.09 TCGA-EE-A2A0-06 7 82584690 82584690 G A PCLO Missense_Mutation p.S1860L 0.38 unknown(0) TCGA-EE-A2A0-06 7 86539182 86539182 C T KIAA1324L Missense_Mutation p.G769S 0.21 tolerated(0.13) probably_damaging(0.919) TCGA-EE-A2A0-06 7 87135295 87135295 G A ABCB1 Missense_Mutation p.A1185V 0.16 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A0-06 7 92734411 92734411 C T SAMD9 Missense_Mutation p.E334K 0.21 tolerated(1) benign(0.001) TCGA-EE-A2A0-06 7 99474422 99474422 G A OR2AE1 Silent p.L79L 0.24 TCGA-EE-A2A0-06 7 99474423 99474423 G A OR2AE1 Silent p.I78I 0.24 TCGA-EE-A2A0-06 8 110439294 110439294 G A PKHD1L1 Missense_Mutation p.G970E 0.16 deleterious(0.02) possibly_damaging(0.892) TCGA-EE-A2A0-06 8 131964220 131964220 G A ADCY8 Missense_Mutation p.P379S 0.14 deleterious(0.01) benign(0.241) TCGA-EE-A2A0-06 8 132002709 132002709 C T ADCY8 Missense_Mutation p.R347H 0.19 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A0-06 8 13959909 13959909 G A SGCZ Silent p.L240L 0.15 TCGA-EE-A2A0-06 8 22428628 22428628 C T SORBS3 Missense_Mutation p.P546L 0.19 deleterious(0.03) benign(0.394) TCGA-EE-A2A0-06 8 23539056 23539056 C T NKX3-1 Missense_Mutation p.R128Q 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 8 24193108 24193108 G A ADAM28 Silent p.G507G 0.26 TCGA-EE-A2A0-06 8 48845643 48845643 G A PRKDC Silent p.S571S 0.13 TCGA-EE-A2A0-06 8 54965265 54965265 C T LYPLA1 Missense_Mutation p.G138S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2A0-06 8 56436719 56436719 C T XKR4 Missense_Mutation p.P629L 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A0-06 8 73480030 73480030 C T KCNB2 Missense_Mutation p.P21S 0.16 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A2A0-06 8 73848523 73848523 C T KCNB2 Silent p.I311I 0.15 TCGA-EE-A2A0-06 8 92972599 92972599 G C RUNX1T1 Missense_Mutation p.D573E 0.15 tolerated(0.98) benign(0.001) TCGA-EE-A2A0-06 8 95178106 95178106 G A CDH17 Missense_Mutation p.P389S 0.17 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A0-06 9 102590532 102590532 G A NR4A3 Missense_Mutation p.E81K 0.16 deleterious(0.01) benign(0.318) TCGA-EE-A2A0-06 9 113550028 113550028 G A MUSK Missense_Mutation p.E613K 0.15 deleterious(0) probably_damaging(0.981) TCGA-EE-A2A0-06 9 131600353 131600353 G A CCBL1 Missense_Mutation p.P139S 0.24 deleterious(0.03) possibly_damaging(0.901) TCGA-EE-A2A0-06 9 135553911 135553911 C T GTF3C4 Missense_Mutation p.S302L 0.26 tolerated(0.54) probably_damaging(0.977) TCGA-EE-A2A0-06 9 136030674 136030674 G A GBGT1 Missense_Mutation p.P84S 0.21 deleterious(0.05) possibly_damaging(0.887) TCGA-EE-A2A0-06 9 15468713 15468713 A T PSIP1 Silent p.A445A 0.22 TCGA-EE-A2A0-06 9 21077589 21077589 C T IFNB1 Missense_Mutation p.D94N 0.20 tolerated(1) benign(0.002) TCGA-EE-A2A0-06 9 21227727 21227727 C T IFNA17 Missense_Mutation p.R149K 0.25 tolerated(0.1) benign(0.31) TCGA-EE-A2A0-06 9 21409573 21409573 C T IFNA8 Missense_Mutation p.P133L 0.26 tolerated(0.1) benign(0.08) TCGA-EE-A2A0-06 9 77400927 77400927 G A TRPM6 Nonsense_Mutation p.R928* 0.24 TCGA-EE-A2A0-06 9 91667064 91667064 C T SHC3 Missense_Mutation p.E284K 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2A0-06 X 101096477 101096477 C T NXF5 Silent p.L98L 0.24 TCGA-EE-A2A0-06 X 107829888 107829888 G A COL4A5 Missense_Mutation p.G359E 0.21 unknown(0) TCGA-EE-A2A0-06 X 134683699 134683699 C T DDX26B Missense_Mutation p.S292F 0.18 deleterious(0) probably_damaging(0.95) TCGA-EE-A2A0-06 X 134991836 134991836 G A SAGE1 Missense_Mutation p.E541K 0.30 tolerated(0.08) probably_damaging(0.953) TCGA-EE-A2A0-06 X 135427218 135427218 G A GPR112 Silent p.V451V 0.27 TCGA-EE-A2A0-06 X 140335829 140335829 G A SPANXC Missense_Mutation p.P39S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2A0-06 X 140993591 140993591 C T MAGEC1 Missense_Mutation p.S134F 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2A0-06 X 150348517 150348517 C T GPR50 Silent p.I154I 0.23 TCGA-EE-A2A0-06 X 150840219 150840219 G A PASD1 Missense_Mutation p.E469K 0.18 tolerated(0.11) benign(0.058) TCGA-EE-A2A0-06 X 153049256 153049256 G A SRPK3 Missense_Mutation p.R275Q 0.26 tolerated(1) benign(0.238) TCGA-EE-A2A0-06 X 15706858 15706858 G A CA5BP1 RNA 0.29 TCGA-EE-A2A0-06 X 15706859 15706859 A G CA5BP1 RNA 0.29 TCGA-EE-A2A0-06 X 37312548 37312548 C T PRRG1 Missense_Mutation p.R111C 0.24 tolerated(0.07) benign(0.028) TCGA-EE-A2A0-06 X 45013381 45013381 G A CXorf36 Silent p.L245L 0.32 TCGA-EE-A2A0-06 X 48208991 48208991 G A SSX3 Intron 0.16 TCGA-EE-A2A0-06 X 54956860 54956860 A C TRO Missense_Mutation p.T1235P 0.23 tolerated_low_confidence(0.12) benign(0.106) TCGA-EE-A2A0-06 X 92965202 92965202 C T FAM133A 3'UTR 0.26 TCGA-EE-A2A1-06 10 1052982 1052982 C T GTPBP4 Nonsense_Mutation p.R343* 0.08 TCGA-EE-A2A1-06 10 114205034 114205034 C T ZDHHC6 Missense_Mutation p.G54E 0.19 deleterious(0) probably_damaging(0.957) TCGA-EE-A2A1-06 10 115364582 115364582 C T NRAP Missense_Mutation p.G1338D 0.17 deleterious(0) probably_damaging(0.955) TCGA-EE-A2A1-06 10 118220731 118220731 G A PNLIPRP3 Missense_Mutation p.G246E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 10 124457747 124457747 C T C10orf120 Silent p.R170R 0.16 TCGA-EE-A2A1-06 10 33559734 33559734 C T NRP1 Missense_Mutation p.R100K 0.21 deleterious(0.01) benign(0.04) TCGA-EE-A2A1-06 10 37430903 37430903 G A ANKRD30A Missense_Mutation p.E304K 0.11 tolerated(1) possibly_damaging(0.636) TCGA-EE-A2A1-06 10 461748 461748 G - DIP2C Frame_Shift_Del p.R274Efs*12 0.08 TCGA-EE-A2A1-06 10 48381932 48381932 C T RBP3 Silent p.R1239R 0.13 TCGA-EE-A2A1-06 10 51464844 51464844 C T AGAP7 Missense_Mutation p.E538K 0.11 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2A1-06 10 55569273 55569273 C T PCDH15 Missense_Mutation p.E447K 0.09 tolerated_low_confidence(0.19) unknown(0) TCGA-EE-A2A1-06 10 60461895 60461895 C T BICC1 Missense_Mutation p.S100F 0.20 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2A1-06 10 61830301 61830301 C T ANK3 Nonsense_Mutation p.W3446* 0.10 TCGA-EE-A2A1-06 10 61834980 61834980 G A ANK3 Missense_Mutation p.L1887F 0.13 probably_damaging(0.986) TCGA-EE-A2A1-06 10 61846616 61846616 C T ANK3 Silent p.V1189V 0.25 TCGA-EE-A2A1-06 10 7205651 7205651 C T SFMBT2 3'UTR 0.14 TCGA-EE-A2A1-06 10 84744851 84744851 C T NRG3 Intron 0.11 TCGA-EE-A2A1-06 10 95380490 95380490 C T PDE6C Silent p.I194I 0.22 TCGA-EE-A2A1-06 11 102995997 102995997 C T DYNC2H1 Silent p.F610F 0.39 TCGA-EE-A2A1-06 11 110035489 110035489 C T ZC3H12C Missense_Mutation p.P560L 0.11 deleterious(0) possibly_damaging(0.632) TCGA-EE-A2A1-06 11 117261549 117261549 A C CEP164 Missense_Mutation p.E664A 0.14 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A2A1-06 11 117261550 117261550 G A CEP164 Silent p.E664E 0.14 TCGA-EE-A2A1-06 11 118626210 118626210 G A DDX6 Silent p.L393L 0.15 TCGA-EE-A2A1-06 11 120989022 120989022 C T TECTA Silent p.F266F 0.11 TCGA-EE-A2A1-06 11 121393405 121393405 C T SORL1 Silent p.I505I 0.18 TCGA-EE-A2A1-06 11 123471201 123471201 G A GRAMD1B Missense_Mutation p.R189Q 0.15 deleterious(0) possibly_damaging(0.883) TCGA-EE-A2A1-06 11 125466960 125466960 C A STT3A Missense_Mutation p.S32Y 0.15 deleterious(0.02) benign(0.314) TCGA-EE-A2A1-06 11 130342957 130342957 C T ADAMTS15 Silent p.F698F 0.11 TCGA-EE-A2A1-06 11 14280924 14280924 T G RP11-21L19.1 3'Flank 0.18 TCGA-EE-A2A1-06 11 17438482 17438482 G A ABCC8 Silent p.D750D 0.15 TCGA-EE-A2A1-06 11 19256297 19256297 G A E2F8 Missense_Mutation p.R254W 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A1-06 11 2170458 2170458 G A INS-IGF2 Missense_Mutation p.S102L 0.09 deleterious_low_confidence(0.01) benign(0.024) TCGA-EE-A2A1-06 11 2170618 2170618 G A INS-IGF2 Intron 0.11 TCGA-EE-A2A1-06 11 22248960 22248960 C T ANO5 Missense_Mutation p.P159L 0.16 tolerated(0.15) benign(0.037) TCGA-EE-A2A1-06 11 4510973 4510973 C T OR52K1 Silent p.F281F 0.12 TCGA-EE-A2A1-06 11 4566909 4566909 G A OR52M1 Silent p.L163L 0.12 TCGA-EE-A2A1-06 11 48285673 48285673 G A OR4X1 Silent p.R87R 0.11 TCGA-EE-A2A1-06 11 5020909 5020909 C T OR51L1 Missense_Mutation p.R233C 0.16 deleterious(0.03) possibly_damaging(0.806) TCGA-EE-A2A1-06 11 5373569 5373569 C T OR51B6 Missense_Mutation p.H278Y 0.15 tolerated(1) benign(0.001) TCGA-EE-A2A1-06 11 56230065 56230065 C T OR5M9 Missense_Mutation p.M271I 0.25 tolerated(0.77) benign(0.07) TCGA-EE-A2A1-06 11 56380880 56380880 C T OR5M1 Silent p.A33A 0.10 TCGA-EE-A2A1-06 11 5863024 5863024 G A OR52E6 Missense_Mutation p.S35F 0.16 tolerated(0.8) benign(0) TCGA-EE-A2A1-06 11 60541405 60541405 C T MS4A15 Silent p.I198I 0.15 TCGA-EE-A2A1-06 11 60701033 60701033 C T TMEM132A Missense_Mutation p.A460V 0.22 tolerated(0.25) benign(0.138) TCGA-EE-A2A1-06 11 64001477 64001477 C T DNAJC4 Intron 0.13 TCGA-EE-A2A1-06 11 65315462 65315462 G A LTBP3 Missense_Mutation p.P592L 0.16 tolerated(0.11) benign(0.018) TCGA-EE-A2A1-06 11 86518990 86518990 G A PRSS23 Missense_Mutation p.G102D 0.13 tolerated(0.48) benign(0.026) TCGA-EE-A2A1-06 11 89155089 89155089 G A NOX4 Silent p.L204L 0.16 TCGA-EE-A2A1-06 11 92087123 92087123 C T FAT3 Silent p.I615I 0.13 TCGA-EE-A2A1-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.10 tolerated(0.09) possibly_damaging(0.653) TCGA-EE-A2A1-06 12 106461577 106461577 C T NUAK1 Missense_Mutation p.R330Q 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2A1-06 12 107395556 107395556 G A CRY1 Missense_Mutation p.S194L 0.17 tolerated(0.16) benign(0.049) TCGA-EE-A2A1-06 12 112646369 112646369 C T HECTD4 Missense_Mutation p.G2499S 0.13 probably_damaging(0.99) TCGA-EE-A2A1-06 12 11420830 11420830 C T PRB3 Missense_Mutation p.G118E 0.11 tolerated(0.15) unknown(0) TCGA-EE-A2A1-06 12 11461474 11461474 C T PRB4 Missense_Mutation p.G148E 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A1-06 12 121693421 121693421 G A CAMKK2 Missense_Mutation p.T280I 0.14 deleterious(0.02) benign(0.222) TCGA-EE-A2A1-06 12 21450417 21450417 G A SLCO1A2 Silent p.F332F 0.15 TCGA-EE-A2A1-06 12 25243107 25243107 C T LRMP Silent p.I194I 0.09 TCGA-EE-A2A1-06 12 26636832 26636832 C T ITPR2 Splice_Site p.X1938_splice 0.16 TCGA-EE-A2A1-06 12 48919456 48919456 C T OR8S1 Silent p.L14L 0.19 TCGA-EE-A2A1-06 12 50821651 50821651 C T LARP4 Missense_Mutation p.S42F 0.28 tolerated(0.35) possibly_damaging(0.563) TCGA-EE-A2A1-06 12 52862871 52862871 G A KRT6C Missense_Mutation p.S557F 0.18 tolerated(0.07) unknown(0) TCGA-EE-A2A1-06 12 53237993 53237993 G A KRT78 Missense_Mutation p.L311F 0.21 deleterious(0.01) benign(0.253) TCGA-EE-A2A1-06 12 53238396 53238396 C T KRT78 Missense_Mutation p.E290K 0.16 deleterious(0.01) benign(0.104) TCGA-EE-A2A1-06 12 54912728 54912728 G A NCKAP1L Missense_Mutation p.G484E 0.15 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A1-06 12 55714515 55714515 C T OR6C1 Silent p.I44I 0.20 TCGA-EE-A2A1-06 12 56359907 56359907 G A PMEL 5'Flank 0.17 TCGA-EE-A2A1-06 12 56815145 56815145 G A TIMELESS Missense_Mutation p.S953F 0.15 tolerated(0.06) benign(0.292) TCGA-EE-A2A1-06 12 5860054 5860054 C T ANO2 Missense_Mutation p.G376R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 12 6061613 6061613 C T VWF Missense_Mutation p.E2687K 0.16 deleterious(0) possibly_damaging(0.636) TCGA-EE-A2A1-06 12 73046174 73046174 C T TRHDE Silent p.F871F 0.20 TCGA-EE-A2A1-06 12 81688660 81688660 T C PPFIA2 Missense_Mutation p.E960G 0.10 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A1-06 12 8212497 8212497 G C C3AR1 Missense_Mutation p.C95W 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 12 9345243 9345243 G A PZP Silent p.S449S 0.14 TCGA-EE-A2A1-06 12 97045530 97045530 C T C12orf55 Silent p.F1679F 0.17 TCGA-EE-A2A1-06 13 101714421 101714421 C T NALCN Missense_Mutation p.E1552K 0.19 deleterious(0) probably_damaging(0.983) TCGA-EE-A2A1-06 13 114514837 114514837 C T TMEM255B Silent p.Y314Y 0.11 TCGA-EE-A2A1-06 13 115051788 115051788 C T UPF3A Missense_Mutation p.P145S 0.10 deleterious(0) possibly_damaging(0.728) TCGA-EE-A2A1-06 13 19748209 19748209 C T TUBA3C Missense_Mutation p.A383T 0.17 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-EE-A2A1-06 13 24892988 24892988 G A C1QTNF9 Missense_Mutation p.D67N 0.09 tolerated(0.26) benign(0.211) TCGA-EE-A2A1-06 13 29599843 29599843 G A MTUS2 Silent p.K346K 0.15 TCGA-EE-A2A1-06 13 31717943 31717943 G A HSPH1 Missense_Mutation p.P568S 0.14 tolerated(0.79) possibly_damaging(0.755) TCGA-EE-A2A1-06 13 39425951 39425951 C T FREM2 Missense_Mutation p.H2291Y 0.12 tolerated(0.05) possibly_damaging(0.643) TCGA-EE-A2A1-06 13 49765474 49765474 C T FNDC3A Missense_Mutation p.P727L 0.18 deleterious(0.03) benign(0.304) TCGA-EE-A2A1-06 13 50204565 50204565 G A ARL11 Splice_Site 0.16 TCGA-EE-A2A1-06 13 77852997 77852997 C T MYCBP2 Missense_Mutation p.R177Q 0.13 probably_damaging(0.945) TCGA-EE-A2A1-06 13 78337309 78337309 C T SLAIN1 Missense_Mutation p.S412L 0.11 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A2A1-06 14 106725418 106725418 C T IGHV3-23 Missense_Mutation p.G45E 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.866) TCGA-EE-A2A1-06 14 106791273 106791273 C T IGHV3-30 Missense_Mutation p.G28E 0.04 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A2A1-06 14 106866454 106866454 C T IGHV3-38 Missense_Mutation p.M100I 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-EE-A2A1-06 14 21162162 21162162 C T ANG Missense_Mutation p.P147S 0.09 deleterious_low_confidence(0) benign(0) TCGA-EE-A2A1-06 14 21876981 21876981 G A CHD8 Missense_Mutation p.R790C 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A1-06 14 22251445 22251445 G A TRAV7 Missense_Mutation p.G21E 0.16 deleterious(0.02) possibly_damaging(0.869) TCGA-EE-A2A1-06 14 22314932 22314932 C T TRAV8-2 5'UTR 0.13 TCGA-EE-A2A1-06 14 22592107 22592107 C T TRAV26-1 Silent p.I64I 0.18 TCGA-EE-A2A1-06 14 23549485 23549485 C T ACIN1 Silent p.E411E 0.17 TCGA-EE-A2A1-06 14 70633620 70633620 G A SLC8A3 Missense_Mutation p.P507L 0.17 tolerated(0.18) benign(0.017) TCGA-EE-A2A1-06 14 73554749 73554749 C T RBM25 Silent p.L141L 0.14 TCGA-EE-A2A1-06 14 73554750 73554750 C T RBM25 Missense_Mutation p.R142C 0.14 probably_damaging(0.975) TCGA-EE-A2A1-06 14 75747866 75747867 - TC FOS Frame_Shift_Ins p.G296Lfs*116 0.15 TCGA-EE-A2A1-06 14 79181468 79181468 G A NRXN3 Missense_Mutation p.R304K 0.14 tolerated(0.65) benign(0.041) TCGA-EE-A2A1-06 14 88652026 88652026 C T KCNK10 Silent p.T495T 0.16 TCGA-EE-A2A1-06 14 94400929 94400929 G A ASB2 3'UTR 0.13 TCGA-EE-A2A1-06 14 96756092 96756092 G A ATG2B Silent p.I1969I 0.20 TCGA-EE-A2A1-06 15 25342897 25342897 G A SNORD116-25 RNA 0.13 TCGA-EE-A2A1-06 15 25420141 25420141 A C SNORD115-3 RNA 0.08 TCGA-EE-A2A1-06 15 25448240 25448240 C T SNORD115-20 5'Flank 0.17 TCGA-EE-A2A1-06 15 25463764 25463764 G T SNORD115-27 5'Flank 0.12 TCGA-EE-A2A1-06 15 28443628 28443628 G A HERC2 Missense_Mutation p.S2636F 0.17 benign(0.013) TCGA-EE-A2A1-06 15 45353277 45353277 C T SORD Missense_Mutation p.A93V 0.30 deleterious(0) probably_damaging(0.971) TCGA-EE-A2A1-06 15 51293323 51293323 C T AP4E1 Missense_Mutation p.P1066S 0.08 tolerated(0.72) benign(0.005) TCGA-EE-A2A1-06 15 54305845 54305845 G A UNC13C Missense_Mutation p.E249K 0.07 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2A1-06 15 55626105 55626105 C T PIGB Missense_Mutation p.R232C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 15 58974406 58974406 C T ADAM10 Missense_Mutation p.G105E 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A1-06 15 58974407 58974407 C T ADAM10 Missense_Mutation p.G105R 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A1-06 15 60653146 60653146 G A ANXA2 Silent p.S135S 0.11 TCGA-EE-A2A1-06 15 63111718 63111718 C T TLN2 Missense_Mutation p.L2259F 0.28 deleterious(0.04) benign(0.033) TCGA-EE-A2A1-06 15 67665734 67665734 G A IQCH Silent p.R445R 0.19 TCGA-EE-A2A1-06 15 73616183 73616183 C T HCN4 Missense_Mutation p.E751K 0.11 deleterious(0) unknown(0) TCGA-EE-A2A1-06 15 73996595 73996595 C T CD276 Missense_Mutation p.S384F 0.18 tolerated(0.73) benign(0.008) TCGA-EE-A2A1-06 15 74743147 74743147 C T UBL7 Missense_Mutation p.D176N 0.23 tolerated(0.17) benign(0.046) TCGA-EE-A2A1-06 15 85164501 85164501 G A ZSCAN2 Missense_Mutation p.E359K 0.12 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A1-06 15 91449243 91449243 G A MAN2A2 Missense_Mutation p.R235Q 0.28 tolerated(0.11) possibly_damaging(0.717) TCGA-EE-A2A1-06 16 112591 112591 C T RHBDF1 Missense_Mutation p.D300N 0.14 tolerated(0.33) possibly_damaging(0.744) TCGA-EE-A2A1-06 16 1308203 1308203 G A TPSD1 Missense_Mutation p.E222K 0.15 tolerated(0.42) benign(0.022) TCGA-EE-A2A1-06 16 14645907 14645907 G T PARN Missense_Mutation p.S484Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A1-06 16 20634666 20634666 G A ACSM1 3'UTR 0.50 TCGA-EE-A2A1-06 16 20638585 20638585 C T ACSM1 Silent p.G451G 0.25 TCGA-EE-A2A1-06 16 20959850 20959850 G A DNAH3 Silent p.L3766L 0.19 TCGA-EE-A2A1-06 16 2159767 2159767 G A PKD1 Missense_Mutation p.P1801S 0.21 probably_damaging(0.98) TCGA-EE-A2A1-06 16 24135202 24135202 C T PRKCB Missense_Mutation p.T322I 0.21 tolerated(0.2) benign(0.013) TCGA-EE-A2A1-06 16 30409290 30409290 G A ZNF48 Missense_Mutation p.R240Q 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2A1-06 16 30734010 30734010 C T SRCAP Missense_Mutation p.S1278L 0.11 unknown(0) TCGA-EE-A2A1-06 16 31539946 31539946 C T AHSP Silent p.F81F 0.13 TCGA-EE-A2A1-06 16 49407898 49407898 G A C16orf78 Silent p.R16R 0.15 TCGA-EE-A2A1-06 16 49407910 49407910 G A C16orf78 Nonsense_Mutation p.W20* 0.27 TCGA-EE-A2A1-06 16 50667112 50667112 C T NKD1 Missense_Mutation p.S278F 0.15 deleterious(0) possibly_damaging(0.865) TCGA-EE-A2A1-06 16 55857517 55857517 C T CES1 Missense_Mutation p.E162K 0.17 deleterious(0.02) possibly_damaging(0.9) TCGA-EE-A2A1-06 16 70016296 70016296 G A PDXDC2P RNA 0.23 TCGA-EE-A2A1-06 16 70172811 70172811 C T PDPR Silent p.A400A 0.06 TCGA-EE-A2A1-06 16 70502815 70502815 C T FUK Missense_Mutation p.P243S 0.17 deleterious(0) probably_damaging(0.971) TCGA-EE-A2A1-06 16 77769818 77769818 G T NUDT7 Nonsense_Mutation p.E95* 0.30 TCGA-EE-A2A1-06 16 83704403 83704403 C T CDH13 Silent p.A417A 0.19 TCGA-EE-A2A1-06 16 85141502 85141502 C T FAM92B Missense_Mutation p.E126K 0.14 tolerated(0.33) benign(0.03) TCGA-EE-A2A1-06 16 88932262 88932262 C T PABPN1L Missense_Mutation p.E115K 0.23 tolerated(0.71) benign(0.007) TCGA-EE-A2A1-06 17 10216579 10216579 G A MYH13 Silent p.A1359A 0.14 TCGA-EE-A2A1-06 17 35620742 35620743 - A ACACA Frame_Shift_Ins p.S392Ffs*23 0.10 TCGA-EE-A2A1-06 17 37922195 37922195 G A IKZF3 Missense_Mutation p.L460F 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2A1-06 17 45360790 45360790 C T ITGB3 Missense_Mutation p.S79F 0.11 tolerated(0.79) benign(0.015) TCGA-EE-A2A1-06 17 46685276 46685276 C T HOXB7 Silent p.K194K 0.15 TCGA-EE-A2A1-06 17 47246256 47246256 C T B4GALNT2 Missense_Mutation p.H497Y 0.19 deleterious(0) probably_damaging(0.985) TCGA-EE-A2A1-06 17 48265253 48265253 C T COL1A1 Missense_Mutation p.G1118D 0.13 unknown(0) TCGA-EE-A2A1-06 17 48274392 48274392 G A COL1A1 Silent p.L261L 0.15 TCGA-EE-A2A1-06 17 48538185 48538185 C T ACSF2 Silent p.V92V 0.28 TCGA-EE-A2A1-06 17 48652936 48652936 G A CACNA1G Silent p.L391L 0.18 TCGA-EE-A2A1-06 17 48736713 48736713 G A ABCC3 Missense_Mutation p.E264K 0.12 tolerated(0.82) benign(0.001) TCGA-EE-A2A1-06 17 53068248 53068248 G A STXBP4 Missense_Mutation p.G37E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 17 60813770 60813770 C T MARCH10 Missense_Mutation p.V487I 0.11 tolerated(0.42) benign(0.01) TCGA-EE-A2A1-06 17 62506306 62506306 C T CEP95 Missense_Mutation p.P55L 0.14 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2A1-06 17 64728899 64728899 G A PRKCA Missense_Mutation p.D338N 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2A1-06 17 65941951 65941951 C T BPTF Missense_Mutation p.P2376L 0.10 benign(0.273) TCGA-EE-A2A1-06 17 66526618 66526618 C A PRKAR1A 3'UTR 0.19 TCGA-EE-A2A1-06 17 7011786 7011786 G A ASGR2 Missense_Mutation p.T116I 0.27 tolerated(0.08) benign(0.232) TCGA-EE-A2A1-06 17 72469868 72469868 G A CD300A Silent p.R78R 0.13 TCGA-EE-A2A1-06 17 74006381 74006381 C T EVPL Missense_Mutation p.E969K 0.22 deleterious(0) benign(0.055) TCGA-EE-A2A1-06 17 8138478 8138478 G A CTC1 Silent p.S444S 0.14 TCGA-EE-A2A1-06 18 21107779 21107779 G A C18orf8 Missense_Mutation p.A404T 0.15 tolerated(0.42) benign(0.008) TCGA-EE-A2A1-06 18 21109178 21109178 C T C18orf8 Silent p.L444L 0.18 TCGA-EE-A2A1-06 18 22807209 22807209 C A ZNF521 Nonsense_Mutation p.E225* 0.17 TCGA-EE-A2A1-06 18 31538324 31538324 C T NOL4 Missense_Mutation p.G372E 0.20 tolerated(0.1) probably_damaging(0.975) TCGA-EE-A2A1-06 18 59157784 59157784 C T CDH20 5'UTR 0.17 TCGA-EE-A2A1-06 18 59166463 59166463 C T CDH20 Silent p.I97I 0.13 TCGA-EE-A2A1-06 18 61310832 61310832 G A SERPINB4 5'UTR 0.12 TCGA-EE-A2A1-06 18 63511048 63511048 G A CDH7 Missense_Mutation p.E328K 0.17 tolerated(0.22) benign(0.216) TCGA-EE-A2A1-06 18 70502539 70502539 G A NETO1 Intron 0.25 TCGA-EE-A2A1-06 18 77895753 77895753 C T ADNP2 Silent p.L819L 0.20 TCGA-EE-A2A1-06 19 12790530 12790530 G A DHPS Silent p.I166I 0.19 TCGA-EE-A2A1-06 19 15763401 15763401 C T CYP4F3 Missense_Mutation p.S314F 0.17 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2A1-06 19 15917856 15917856 G A OR10H1 3'UTR 0.15 TCGA-EE-A2A1-06 19 15918054 15918054 C T OR10H1 Missense_Mutation p.S265N 0.16 tolerated(0.11) benign(0.002) TCGA-EE-A2A1-06 19 16034682 16034682 G A CYP4F11 Silent p.F286F 0.09 TCGA-EE-A2A1-06 19 17049238 17049238 C T CPAMD8 Missense_Mutation p.A985T 0.23 tolerated(0.4) benign(0.013) TCGA-EE-A2A1-06 19 18324191 18324191 G A PDE4C Missense_Mutation p.S532F 0.19 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2A1-06 19 19135694 19135694 G A SUGP2 Missense_Mutation p.S488F 0.15 deleterious(0) probably_damaging(0.928) TCGA-EE-A2A1-06 19 19408092 19408092 G A SUGP1 Missense_Mutation p.R317W 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2A1-06 19 22364254 22364254 C T ZNF676 Missense_Mutation p.D89N 0.07 tolerated(0.38) possibly_damaging(0.61) TCGA-EE-A2A1-06 19 35639627 35639627 G A FXYD7 Splice_Site p.X21_splice 0.12 TCGA-EE-A2A1-06 19 35862505 35862505 C T GPR42 Missense_Mutation p.P82S 0.12 tolerated(0.51) benign(0.091) TCGA-EE-A2A1-06 19 36017567 36017567 C T SBSN Silent p.K539K 0.17 TCGA-EE-A2A1-06 19 36398369 36398369 G A TYROBP Missense_Mutation p.R70W 0.15 deleterious(0) possibly_damaging(0.888) TCGA-EE-A2A1-06 19 37441924 37441924 C T ZNF568 Silent p.F623F 0.13 TCGA-EE-A2A1-06 19 38910555 38910555 C T RASGRP4 Missense_Mutation p.G203E 0.14 tolerated(1) benign(0.012) TCGA-EE-A2A1-06 19 40395990 40395990 G A FCGBP Silent p.F2469F 0.27 TCGA-EE-A2A1-06 19 41522589 41522589 G A CYP2B6 Missense_Mutation p.E445K 0.14 deleterious(0) probably_damaging(0.974) TCGA-EE-A2A1-06 19 43697511 43697511 G A PSG4 3'UTR 0.13 TCGA-EE-A2A1-06 19 44679644 44679644 C T ZNF226 Intron 0.12 TCGA-EE-A2A1-06 19 45496178 45496178 C T CLPTM1 3'UTR 0.16 TCGA-EE-A2A1-06 19 47593230 47593230 C T ZC3H4 Missense_Mutation p.G237S 0.16 benign(0.166) TCGA-EE-A2A1-06 19 47823988 47823988 C T C5AR1 Silent p.L318L 0.15 TCGA-EE-A2A1-06 19 49547434 49547434 A T CGB5 5'UTR 0.17 TCGA-EE-A2A1-06 19 50245169 50245169 G A TSKS Silent p.S490S 0.18 TCGA-EE-A2A1-06 19 50251366 50251366 C T TSKS Silent p.L185L 0.10 TCGA-EE-A2A1-06 19 50303365 50303365 C T AP2A1 Silent p.N471N 0.11 TCGA-EE-A2A1-06 19 50862308 50862308 C T NAPSA Missense_Mutation p.G332E 0.09 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2A1-06 19 52439354 52439354 C T ZNF613 5'UTR 0.20 TCGA-EE-A2A1-06 19 53761968 53761968 C T VN1R2 Missense_Mutation p.L114F 0.17 deleterious(0.04) benign(0.429) TCGA-EE-A2A1-06 19 53994074 53994074 C T ZNF813 Silent p.F196F 0.14 TCGA-EE-A2A1-06 19 53994075 53994075 C T ZNF813 Missense_Mutation p.R197W 0.14 tolerated(0.09) benign(0.003) TCGA-EE-A2A1-06 19 54313967 54313967 C T NLRP12 Missense_Mutation p.E316K 0.16 tolerated(0.71) benign(0.046) TCGA-EE-A2A1-06 19 54627239 54627239 C T PRPF31 Silent p.S213S 0.18 TCGA-EE-A2A1-06 19 55086487 55086487 G A LILRA2 Silent p.E214E 0.14 TCGA-EE-A2A1-06 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.14 deleterious(0.03) benign(0.227) TCGA-EE-A2A1-06 19 55702912 55702912 T G PTPRH Missense_Mutation p.K781Q 0.17 benign(0.391) TCGA-EE-A2A1-06 19 5784277 5784277 G A CTB-54O9.9 3'UTR 0.12 TCGA-EE-A2A1-06 19 58301699 58301699 C T ZNF586 Missense_Mutation p.L32F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 19 7964838 7964838 C T LRRC8E Silent p.S477S 0.17 TCGA-EE-A2A1-06 19 9063451 9063451 G A MUC16 Missense_Mutation p.L7999F 0.08 unknown(0) TCGA-EE-A2A1-06 19 9083258 9083258 T C MUC16 Missense_Mutation p.T2853A 0.26 unknown(0) TCGA-EE-A2A1-06 19 9272087 9272087 C T ZNF317 Missense_Mutation p.S589F 0.14 deleterious(0.01) benign(0.265) TCGA-EE-A2A1-06 1 102269864 102269864 C T OLFM3 Nonsense_Mutation p.W436* 0.13 TCGA-EE-A2A1-06 1 113460124 113460124 G A SLC16A1 Missense_Mutation p.L302F 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A1-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.16 tolerated(0.06) benign(0.006) TCGA-EE-A2A1-06 1 115576081 115576081 G A TSHB Missense_Mutation p.R33K 0.27 tolerated(1) benign(0.008) TCGA-EE-A2A1-06 1 12907971 12907971 C T HNRNPCL1 Missense_Mutation p.D58N 0.08 tolerated(0.11) benign(0.003) TCGA-EE-A2A1-06 1 150464927 150464927 C T TARS2 Missense_Mutation p.R246W 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A2A1-06 1 152057367 152057367 C T TCHHL1 3'UTR 0.11 TCGA-EE-A2A1-06 1 153579862 153579862 G A S100A16 3'UTR 0.50 TCGA-EE-A2A1-06 1 154026824 154026824 C T NUP210L Silent p.Q1121Q 0.36 TCGA-EE-A2A1-06 1 154091161 154091161 G A NUP210L Missense_Mutation p.R484C 0.11 deleterious(0) possibly_damaging(0.762) TCGA-EE-A2A1-06 1 155307894 155307895 - T ASH1L Frame_Shift_Ins p.I2930Nfs*8 0.28 TCGA-EE-A2A1-06 1 155449530 155449530 G C ASH1L Missense_Mutation p.T1044S 0.37 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2A1-06 1 157559236 157559236 T C FCRL4 Missense_Mutation p.K22R 0.15 tolerated(0.15) benign(0.069) TCGA-EE-A2A1-06 1 158669934 158669934 G A OR6K2 Missense_Mutation p.S170L 0.13 deleterious(0.04) benign(0.168) TCGA-EE-A2A1-06 1 159683283 159683283 C T CRP 3'UTR 0.37 TCGA-EE-A2A1-06 1 159785421 159785421 C T FCRL6 Silent p.P425P 0.31 TCGA-EE-A2A1-06 1 159889003 159889003 G A TAGLN2 Intron 0.47 TCGA-EE-A2A1-06 1 159897643 159897643 C T IGSF9 Missense_Mutation p.D1089N 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 1 160171175 160171175 G A CASQ1 3'UTR 0.36 TCGA-EE-A2A1-06 1 162740136 162740136 C T DDR2 Silent p.S446S 0.12 TCGA-EE-A2A1-06 1 163325310 163325310 C T NUF2 3'UTR 0.25 TCGA-EE-A2A1-06 1 164769111 164769111 G A PBX1 Missense_Mutation p.R229Q 0.45 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A2A1-06 1 165218847 165218847 G A LMX1A Silent p.F98F 0.28 TCGA-EE-A2A1-06 1 169823707 169823707 G A SCYL3 Missense_Mutation p.L625F 0.13 tolerated(0.7) benign(0.003) TCGA-EE-A2A1-06 1 170699435 170699435 G A PRRX1 Intron 0.35 TCGA-EE-A2A1-06 1 172001586 172001586 G A DNM3 Missense_Mutation p.E212K 0.39 tolerated(0.07) benign(0.351) TCGA-EE-A2A1-06 1 17601261 17601261 C T PADI3 Silent p.L429L 0.20 TCGA-EE-A2A1-06 1 183255900 183255900 G A NMNAT2 Silent p.S115S 0.12 TCGA-EE-A2A1-06 1 186934597 186934597 C T PLA2G4A Missense_Mutation p.H546Y 0.09 tolerated(0.51) possibly_damaging(0.773) TCGA-EE-A2A1-06 1 19018340 19018340 G A PAX7 Missense_Mutation p.E227K 0.15 deleterious(0.02) benign(0.044) TCGA-EE-A2A1-06 1 192153620 192153620 G A RGS18 Missense_Mutation p.R215Q 0.43 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2A1-06 1 192335158 192335158 G A RGS21 Silent p.K121K 0.34 TCGA-EE-A2A1-06 1 201195175 201195175 G A IGFN1 Silent p.R3570R 0.24 TCGA-EE-A2A1-06 1 202287105 202287105 C T LGR6 Silent p.L558L 0.05 TCGA-EE-A2A1-06 1 202992185 202992185 C T TMEM183A 3'UTR 0.28 TCGA-EE-A2A1-06 1 206634896 206634896 C T SRGAP2 3'UTR 0.16 TCGA-EE-A2A1-06 1 207074886 207074886 G A IL24 Silent p.L118L 0.44 TCGA-EE-A2A1-06 1 207287606 207287606 T C C4BPA Missense_Mutation p.W102R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 1 207791460 207791460 G A CR1 Missense_Mutation p.G2312R 0.09 tolerated(0.92) possibly_damaging(0.73) TCGA-EE-A2A1-06 1 209964110 209964110 C T IRF6 Missense_Mutation p.E264K 0.11 tolerated(0.13) probably_damaging(0.915) TCGA-EE-A2A1-06 1 210977380 210977380 C T KCNH1 Missense_Mutation p.G531R 0.39 deleterious(0.02) possibly_damaging(0.565) TCGA-EE-A2A1-06 1 214818462 214818462 C T CENPF Missense_Mutation p.S1850F 0.13 possibly_damaging(0.885) TCGA-EE-A2A1-06 1 216497021 216497021 G A USH2A Missense_Mutation p.R449C 0.43 benign(0.052) TCGA-EE-A2A1-06 1 22902712 22902712 G A EPHA8 Nonsense_Mutation p.W54* 0.12 TCGA-EE-A2A1-06 1 232943108 232943108 G A MAP10 Missense_Mutation p.G780E 0.36 tolerated(0.13) benign(0.091) TCGA-EE-A2A1-06 1 235324630 235324630 C T RBM34 5'UTR 0.12 TCGA-EE-A2A1-06 1 241262021 241262021 T C RGS7 Silent p.G40G 0.41 TCGA-EE-A2A1-06 1 242253365 242253365 C T PLD5 Missense_Mutation p.G468S 0.42 tolerated(0.07) probably_damaging(1) TCGA-EE-A2A1-06 1 247921374 247921374 C T OR1C1 Missense_Mutation p.S112N 0.09 tolerated(1) probably_damaging(0.968) TCGA-EE-A2A1-06 1 2939256 2939256 G A ACTRT2 Missense_Mutation p.D336N 0.18 tolerated(0.07) benign(0.341) TCGA-EE-A2A1-06 1 33955156 33955156 C T ZSCAN20 Silent p.L240L 0.11 TCGA-EE-A2A1-06 1 34042909 34042909 G A CSMD2 Silent p.I2523I 0.16 TCGA-EE-A2A1-06 1 39927552 39927552 C T MACF1 Intron 0.17 TCGA-EE-A2A1-06 1 40030846 40030846 G A PABPC4 Missense_Mutation p.P393S 0.19 tolerated(0.11) benign(0.115) TCGA-EE-A2A1-06 1 47400021 47400021 G A CYP4A11 Silent p.I305I 0.17 TCGA-EE-A2A1-06 1 47533324 47533324 C T CYP4Z1 Silent p.F54F 0.07 TCGA-EE-A2A1-06 1 57378168 57378168 G A C8A Silent p.L491L 0.21 TCGA-EE-A2A1-06 1 57602246 57602246 T A DAB1 Silent p.G92G 0.08 TCGA-EE-A2A1-06 1 60463302 60463302 G A C1orf87 Silent p.L487L 0.14 TCGA-EE-A2A1-06 1 60463303 60463303 G A C1orf87 Silent p.Y486Y 0.14 TCGA-EE-A2A1-06 1 75038129 75038129 C T C1orf173 Missense_Mutation p.E1089K 0.23 tolerated(0.08) benign(0.017) TCGA-EE-A2A1-06 1 75055375 75055375 C T C1orf173 Missense_Mutation p.E706K 0.13 tolerated(0.21) benign(0.287) TCGA-EE-A2A1-06 1 75684345 75684345 G A SLC44A5 Silent p.I453I 0.23 TCGA-EE-A2A1-06 1 87045870 87045870 C T CLCA4 Missense_Mutation p.P868S 0.20 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A2A1-06 1 87380800 87380800 G A HS2ST1 Silent p.L27L 0.18 TCGA-EE-A2A1-06 1 94466645 94466645 C T ABCA4 Missense_Mutation p.G2100E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 20 17434548 17434548 C T PCSK2 Silent p.S349S 0.07 TCGA-EE-A2A1-06 20 2474616 2474616 G A ZNF343 5'UTR 0.06 TCGA-EE-A2A1-06 20 3303332 3303332 G A C20orf194 Missense_Mutation p.T426I 0.40 tolerated(0.16) benign(0.134) TCGA-EE-A2A1-06 20 33500927 33500927 C T ACSS2 Nonsense_Mutation p.Q135* 0.34 TCGA-EE-A2A1-06 20 40980844 40980844 C T PTPRT Missense_Mutation p.E548K 0.10 tolerated(0.09) benign(0.44) TCGA-EE-A2A1-06 20 44180563 44180563 A G WFDC8 Intron 0.46 TCGA-EE-A2A1-06 20 46311799 46311799 A G SULF2 Missense_Mutation p.Y335H 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2A1-06 20 51870105 51870105 C T TSHZ2 Silent p.S36S 0.44 TCGA-EE-A2A1-06 20 5283028 5283028 C T PROKR2 Silent p.R271R 0.08 TCGA-EE-A2A1-06 20 5904294 5904294 C T CHGB Nonsense_Mutation p.Q502* 0.15 TCGA-EE-A2A1-06 21 15538686 15538686 A G LIPI Missense_Mutation p.S265P 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2A1-06 21 17191160 17191160 C T USP25 Nonsense_Mutation p.Q359* 0.18 TCGA-EE-A2A1-06 21 38639644 38639644 G A DSCR3 5'UTR 0.09 TCGA-EE-A2A1-06 21 41719715 41719715 C T DSCAM Silent p.G364G 0.20 TCGA-EE-A2A1-06 21 46900420 46900420 C T COL18A1 Silent p.L660L 0.22 TCGA-EE-A2A1-06 22 37892011 37892011 C T CARD10 Splice_Site p.X687_splice 0.17 TCGA-EE-A2A1-06 22 39966957 39966957 G A CACNA1I Missense_Mutation p.S67N 0.36 tolerated(0.13) benign(0.125) TCGA-EE-A2A1-06 22 50499909 50499909 G A MLC1 3'UTR 0.54 TCGA-EE-A2A1-06 22 50499910 50499910 G T MLC1 3'UTR 0.54 TCGA-EE-A2A1-06 2 106498412 106498412 G T NCK2 Missense_Mutation p.W285C 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 2 113674714 113674714 G A IL37 Missense_Mutation p.V52M 0.14 deleterious(0) possibly_damaging(0.613) TCGA-EE-A2A1-06 2 119739939 119739939 C T MARCO Missense_Mutation p.P339L 0.14 deleterious(0) unknown(0) TCGA-EE-A2A1-06 2 122494495 122494495 G A NIFK 5'UTR 0.29 TCGA-EE-A2A1-06 2 132238230 132238230 G A TUBA3D Missense_Mutation p.D322N 0.18 deleterious_low_confidence(0.01) benign(0.051) TCGA-EE-A2A1-06 2 137917931 137917931 G A THSD7B Silent p.G506G 0.29 TCGA-EE-A2A1-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.11 tolerated(0.95) unknown(0) TCGA-EE-A2A1-06 2 141283912 141283912 G A LRP1B Silent p.T2590T 0.14 TCGA-EE-A2A1-06 2 141812716 141812716 G A LRP1B Silent p.F507F 0.17 TCGA-EE-A2A1-06 2 149542480 149542480 C T EPC2 Missense_Mutation p.S754L 0.16 tolerated(0.33) benign(0.058) TCGA-EE-A2A1-06 2 162834264 162834264 C T SLC4A10 3'UTR 0.07 TCGA-EE-A2A1-06 2 165947682 165947682 G A SCN3A Silent p.L1661L 0.22 TCGA-EE-A2A1-06 2 168726145 168726145 G A B3GALT1 Missense_Mutation p.R199Q 0.11 tolerated(0.18) possibly_damaging(0.459) TCGA-EE-A2A1-06 2 169996061 169996061 G A LRP2 Missense_Mutation p.P4420L 0.18 possibly_damaging(0.613) TCGA-EE-A2A1-06 2 179255833 179255833 C T OSBPL6 Nonsense_Mutation p.Q804* 0.19 TCGA-EE-A2A1-06 2 179428407 179428407 A G TTN Silent p.D27484D 0.07 TCGA-EE-A2A1-06 2 179612014 179612014 C T TTN Intron 0.14 TCGA-EE-A2A1-06 2 179654825 179654825 C T TTN Silent p.R606R 0.19 TCGA-EE-A2A1-06 2 192700988 192700988 G A SDPR Silent p.T313T 0.12 TCGA-EE-A2A1-06 2 210557650 210557650 C T MAP2 Silent p.L252L 0.09 TCGA-EE-A2A1-06 2 219029397 219029397 G A CXCR1 Missense_Mutation p.P180S 0.18 tolerated(0.34) benign(0.01) TCGA-EE-A2A1-06 2 219508131 219508131 G A ZNF142 Silent p.S1036S 0.13 TCGA-EE-A2A1-06 2 219508457 219508457 G A ZNF142 Missense_Mutation p.P928S 0.12 tolerated(0.22) possibly_damaging(0.641) TCGA-EE-A2A1-06 2 219508458 219508458 T A ZNF142 Silent p.P927P 0.12 TCGA-EE-A2A1-06 2 220437184 220437184 C T INHA Silent p.L30L 0.44 TCGA-EE-A2A1-06 2 220466125 220466125 T C STK11IP Missense_Mutation p.F88S 0.19 deleterious(0) possibly_damaging(0.661) TCGA-EE-A2A1-06 2 227912256 227912256 C T COL4A4 Missense_Mutation p.G1075D 0.16 unknown(0) TCGA-EE-A2A1-06 2 227912257 227912257 C T COL4A4 Missense_Mutation p.G1075S 0.16 unknown(0) TCGA-EE-A2A1-06 2 228886515 228886515 C T SPHKAP Silent p.T203T 0.24 TCGA-EE-A2A1-06 2 236792005 236792005 G A AGAP1 Missense_Mutation p.R356Q 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2A1-06 2 241569855 241569855 C T GPR35 Silent p.C193C 0.33 TCGA-EE-A2A1-06 2 25463248 25463248 G A DNMT3A Missense_Mutation p.R749C 0.22 deleterious(0) possibly_damaging(0.548) TCGA-EE-A2A1-06 2 25497846 25497848 GCG CA DNMT3A Frame_Shift_Del p.R201* 0.12 TCGA-EE-A2A1-06 2 26534301 26534301 C T GPR113 Silent p.P765P 0.17 TCGA-EE-A2A1-06 2 27830820 27830820 C T ZNF512 Missense_Mutation p.H349Y 0.19 tolerated(0.51) benign(0.112) TCGA-EE-A2A1-06 2 40656328 40656328 G A SLC8A1 Missense_Mutation p.R365C 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A1-06 2 40657096 40657096 G A SLC8A1 Nonsense_Mutation p.Q109* 0.18 TCGA-EE-A2A1-06 2 45233243 45233243 G A SIX2 3'UTR 0.24 TCGA-EE-A2A1-06 2 70905880 70905880 C T ADD2 Missense_Mutation p.D447N 0.20 tolerated(0.12) benign(0.158) TCGA-EE-A2A1-06 2 71058196 71058196 G A CD207 Silent p.V324V 0.12 TCGA-EE-A2A1-06 2 74689979 74689979 C A MOGS Missense_Mutation p.G313W 0.13 deleterious(0.01) possibly_damaging(0.807) TCGA-EE-A2A1-06 2 74689980 74689980 A C MOGS Missense_Mutation p.S312R 0.13 tolerated(0.6) benign(0.004) TCGA-EE-A2A1-06 2 79878712 79878712 G A CTNNA2 Silent p.L10L 0.21 TCGA-EE-A2A1-06 2 80875047 80875047 T C CTNNA2 3'UTR 0.19 TCGA-EE-A2A1-06 2 95481296 95481296 G A ANKRD20A8P RNA 0.14 TCGA-EE-A2A1-06 2 9576467 9576467 C A CPSF3 Missense_Mutation p.A246D 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 2 99614663 99614663 G A TSGA10 Silent p.F698F 0.16 TCGA-EE-A2A1-06 3 10452305 10452305 C T ATP2B2 Missense_Mutation p.E132K 0.14 tolerated(0.13) benign(0.085) TCGA-EE-A2A1-06 3 123457801 123457801 C T MYLK Missense_Mutation p.M177I 0.20 tolerated(0.2) benign(0.14) TCGA-EE-A2A1-06 3 128990615 128990615 T C COPG1 Silent p.L617L 0.17 TCGA-EE-A2A1-06 3 14745900 14745900 G A C3orf20 Missense_Mutation p.R312Q 0.18 tolerated(0.06) probably_damaging(0.989) TCGA-EE-A2A1-06 3 151012467 151012467 G A GPR87 Silent p.I189I 0.18 TCGA-EE-A2A1-06 3 155314053 155314053 C T PLCH1 Nonsense_Mutation p.W53* 0.18 TCGA-EE-A2A1-06 3 168834234 168834234 G A MECOM Missense_Mutation p.P353S 0.14 tolerated(0.1) benign(0.008) TCGA-EE-A2A1-06 3 183756725 183756725 T C HTR3D Missense_Mutation p.S443P 0.07 deleterious(0.05) probably_damaging(0.961) TCGA-EE-A2A1-06 3 185766568 185766568 G A ETV5 Missense_Mutation p.P465S 0.22 deleterious(0) probably_damaging(0.914) TCGA-EE-A2A1-06 3 189692443 189692443 G A LEPREL1 Silent p.F452F 0.09 TCGA-EE-A2A1-06 3 194118241 194118241 G A GP5 Silent p.L257L 0.11 TCGA-EE-A2A1-06 3 38603922 38603922 C T SCN5A Missense_Mutation p.R1316Q 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2A1-06 3 38648229 38648229 G A SCN5A Silent p.S357S 0.14 TCGA-EE-A2A1-06 3 48622170 48622170 C T COL7A1 Silent p.E1348E 0.15 TCGA-EE-A2A1-06 3 49140834 49140834 G A QARS Missense_Mutation p.R154W 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A1-06 3 49695561 49695561 C T BSN Missense_Mutation p.P2858S 0.22 unknown(0) TCGA-EE-A2A1-06 3 52472117 52472117 C T SEMA3G Silent p.R536R 0.20 TCGA-EE-A2A1-06 3 58094258 58094258 C T FLNB Missense_Mutation p.P672L 0.11 deleterious(0.04) benign(0.217) TCGA-EE-A2A1-06 3 66433732 66433732 G A LRIG1 Missense_Mutation p.P722L 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A1-06 3 77623788 77623788 A C ROBO2 Missense_Mutation p.K720Q 0.25 deleterious(0.04) benign(0.338) TCGA-EE-A2A1-06 3 78711157 78711157 C T ROBO1 Missense_Mutation p.E692K 0.21 tolerated(0.07) probably_damaging(0.988) TCGA-EE-A2A1-06 4 103188710 103188710 G A SLC39A8 Silent p.F390F 0.18 TCGA-EE-A2A1-06 4 104068603 104068603 G A CENPE Silent p.T1348T 0.09 TCGA-EE-A2A1-06 4 104068604 104068604 G A CENPE Missense_Mutation p.T1348I 0.09 benign(0.035) TCGA-EE-A2A1-06 4 110681755 110681755 C T CFI Silent p.G232G 0.15 TCGA-EE-A2A1-06 4 122722542 122722544 GCG CA EXOSC9 5'UTR 0.22 TCGA-EE-A2A1-06 4 134073333 134073333 G C PCDH10 Missense_Mutation p.D680H 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 4 138442743 138442743 G A PCDH18 Missense_Mutation p.P950S 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 4 141543775 141543775 G A TBC1D9 Silent p.S1125S 0.15 TCGA-EE-A2A1-06 4 144141638 144141638 A T USP38 3'UTR 0.15 TCGA-EE-A2A1-06 4 155241596 155241596 C T DCHS2 Missense_Mutation p.G1197E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 4 15937978 15937978 G A FGFBP1 Missense_Mutation p.S93F 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A1-06 4 177056427 177056427 G A WDR17 Missense_Mutation p.G447S 0.06 deleterious(0.03) benign(0.035) TCGA-EE-A2A1-06 4 185694264 185694264 C T ACSL1 Missense_Mutation p.D296N 0.12 tolerated(1) benign(0.005) TCGA-EE-A2A1-06 4 1920068 1920068 C T WHSC1 Silent p.S376S 0.13 TCGA-EE-A2A1-06 4 25005142 25005142 G A LGI2 Silent p.F523F 0.10 TCGA-EE-A2A1-06 4 40337981 40337981 A G CHRNA9 Missense_Mutation p.K68E 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2A1-06 4 40427904 40427904 C T RBM47 3'UTR 0.16 TCGA-EE-A2A1-06 4 47408824 47408824 C T GABRB1 Silent p.L321L 0.07 TCGA-EE-A2A1-06 4 47938625 47938625 C T CNGA1 Missense_Mutation p.R698Q 0.10 tolerated(0.35) benign(0.022) TCGA-EE-A2A1-06 4 48114430 48114430 C T TXK Missense_Mutation p.D92N 0.14 tolerated(0.21) probably_damaging(1) TCGA-EE-A2A1-06 4 57777040 57777040 T C REST Missense_Mutation p.V79A 0.12 deleterious(0) possibly_damaging(0.816) TCGA-EE-A2A1-06 4 6588815 6588815 C T MAN2B2 Silent p.L162L 0.19 TCGA-EE-A2A1-06 4 6865206 6865206 C T KIAA0232 Missense_Mutation p.P1033S 0.13 tolerated(0.08) benign(0.06) TCGA-EE-A2A1-06 4 71510597 71510597 G A ENAM 3'UTR 0.18 TCGA-EE-A2A1-06 4 75178754 75178754 G A EPGN Missense_Mutation p.G92R 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 4 78783990 78783990 C T MRPL1 5'UTR 0.10 TCGA-EE-A2A1-06 4 79417974 79417974 G A FRAS1 Missense_Mutation p.V2992I 0.09 possibly_damaging(0.558) TCGA-EE-A2A1-06 4 81791270 81791270 C T C4orf22 Missense_Mutation p.P170S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 4 83849306 83849306 G A LIN54 Silent p.V733V 0.19 TCGA-EE-A2A1-06 4 89671660 89671660 G A FAM13A Missense_Mutation p.R619W 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 5 121786421 121786421 G A SNCAIP Missense_Mutation p.E627K 0.15 deleterious(0) benign(0.201) TCGA-EE-A2A1-06 5 13794105 13794105 C T DNAH5 Silent p.K2650K 0.25 TCGA-EE-A2A1-06 5 13901591 13901591 T C DNAH5 Missense_Mutation p.T608A 0.12 possibly_damaging(0.523) TCGA-EE-A2A1-06 5 140167893 140167893 G A PCDHA1 Missense_Mutation p.G673D 0.12 deleterious_low_confidence(0.01) benign(0.041) TCGA-EE-A2A1-06 5 140308858 140308858 C T PCDHAC1 Missense_Mutation p.S794F 0.22 deleterious(0.01) possibly_damaging(0.615) TCGA-EE-A2A1-06 5 140502695 140502695 G A PCDHB4 Missense_Mutation p.R372K 0.15 tolerated(0.58) benign(0.093) TCGA-EE-A2A1-06 5 140736328 140736328 G A PCDHGA4 Missense_Mutation p.D521N 0.14 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EE-A2A1-06 5 149743776 149743776 G A TCOF1 Missense_Mutation p.E89K 0.12 deleterious(0) possibly_damaging(0.766) TCGA-EE-A2A1-06 5 149786757 149786757 G A CD74 Nonsense_Mutation p.Q86* 0.13 TCGA-EE-A2A1-06 5 150278038 150278038 G A ZNF300 Silent p.L48L 0.23 TCGA-EE-A2A1-06 5 154395225 154395225 C T KIF4B Silent p.L602L 0.18 TCGA-EE-A2A1-06 5 156353306 156353306 G A TIMD4 Missense_Mutation p.P288S 0.12 tolerated(0.83) benign(0.111) TCGA-EE-A2A1-06 5 156514015 156514015 C T HAVCR2 3'UTR 0.16 TCGA-EE-A2A1-06 5 156533857 156533857 G A HAVCR2 Missense_Mutation p.P59S 0.12 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2A1-06 5 156593007 156593007 C T FAM71B Missense_Mutation p.G58E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 5 160018075 160018075 G A ATP10B Silent p.I1212I 0.09 TCGA-EE-A2A1-06 5 168176565 168176565 G A SLIT3 Silent p.I683I 0.11 TCGA-EE-A2A1-06 5 170236578 170236578 C T GABRP Missense_Mutation p.T280M 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 5 31799548 31799548 G A PDZD2 Missense_Mutation p.E65K 0.16 tolerated(0.08) benign(0.295) TCGA-EE-A2A1-06 5 31799549 31799549 A C PDZD2 Missense_Mutation p.E65A 0.16 tolerated(0.18) benign(0.01) TCGA-EE-A2A1-06 5 39202018 39202018 G A FYB Missense_Mutation p.P359S 0.08 tolerated(0.2) benign(0.014) TCGA-EE-A2A1-06 5 41000375 41000375 C T MROH2B Missense_Mutation p.D1477N 0.21 tolerated(0.15) benign(0.043) TCGA-EE-A2A1-06 5 41159246 41159246 C T C6 Silent p.G598G 0.16 TCGA-EE-A2A1-06 5 63871693 63871693 C T RGS7BP Missense_Mutation p.S142F 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A1-06 5 79026637 79026637 G A CMYA5 Silent p.E683E 0.17 TCGA-EE-A2A1-06 6 119345824 119345824 C T FAM184A Missense_Mutation p.R105K 0.20 tolerated(1) benign(0.002) TCGA-EE-A2A1-06 6 123369870 123369870 G A CLVS2 Missense_Mutation p.R223Q 0.13 tolerated(0.19) benign(0.105) TCGA-EE-A2A1-06 6 130465686 130465686 T C SAMD3 Silent p.G514G 0.14 TCGA-EE-A2A1-06 6 151121946 151121946 C T PLEKHG1 Silent p.L241L 0.13 TCGA-EE-A2A1-06 6 17507493 17507493 C T CAP2 Missense_Mutation p.H132Y 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.26 deleterious(0.02) benign(0.022) TCGA-EE-A2A1-06 6 31902153 31902153 G A C2 Intron 0.15 TCGA-EE-A2A1-06 6 34511828 34511828 C T SPDEF Silent p.E135E 0.24 TCGA-EE-A2A1-06 6 39158827 39158827 C T KCNK5 Missense_Mutation p.E447K 0.21 tolerated_low_confidence(0.57) benign(0.036) TCGA-EE-A2A1-06 6 42633953 42633953 C T UBR2 Missense_Mutation p.P1284L 0.18 tolerated(0.7) benign(0.004) TCGA-EE-A2A1-06 6 43098319 43098319 C T PTK7 Silent p.F252F 0.10 TCGA-EE-A2A1-06 6 46675788 46675788 T G PLA2G7 Missense_Mutation p.N327T 0.13 tolerated(0.1) probably_damaging(0.968) TCGA-EE-A2A1-06 6 47221041 47221041 C T TNFRSF21 Missense_Mutation p.R487K 0.24 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A1-06 6 55925714 55925714 C T COL21A1 Missense_Mutation p.G776E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 6 55925715 55925715 C T COL21A1 Missense_Mutation p.G776R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 6 90576971 90576971 C T CASP8AP2 RNA 0.14 TCGA-EE-A2A1-06 7 100198504 100198504 C T FBXO24 Silent p.P613P 0.10 TCGA-EE-A2A1-06 7 102738884 102738884 G A ARMC10 Missense_Mutation p.G306S 0.11 tolerated(0.22) probably_damaging(0.98) TCGA-EE-A2A1-06 7 103301888 103301888 C T RELN Missense_Mutation p.R459K 0.13 deleterious(0) probably_damaging(0.965) TCGA-EE-A2A1-06 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.14 TCGA-EE-A2A1-06 7 117246731 117246731 G A CFTR Missense_Mutation p.G971E 0.12 tolerated(0.27) benign(0.01) TCGA-EE-A2A1-06 7 121612657 121612657 G A PTPRZ1 Missense_Mutation p.A123T 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 7 138239559 138239559 C T TRIM24 Missense_Mutation p.P460S 0.08 deleterious(0.03) benign(0.403) TCGA-EE-A2A1-06 7 139092034 139092034 C T LUC7L2 Missense_Mutation p.H275Y 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A1-06 7 141385412 141385412 G A KIAA1147 Silent p.F131F 0.18 TCGA-EE-A2A1-06 7 141952060 141952060 T A PRSS58 Missense_Mutation p.N236I 0.12 deleterious(0.01) benign(0.384) TCGA-EE-A2A1-06 7 142162218 142162218 C T TRBV6-6 Silent p.V19V 0.12 TCGA-EE-A2A1-06 7 143771345 143771345 C T OR2A25 Silent p.F11F 0.12 TCGA-EE-A2A1-06 7 1479646 1479646 G A MICALL2 Silent p.S627S 0.28 TCGA-EE-A2A1-06 7 155604594 155604594 C T SHH Missense_Mutation p.E75K 0.15 deleterious(0.03) possibly_damaging(0.773) TCGA-EE-A2A1-06 7 17843141 17843141 G A SNX13 Silent p.S709S 0.19 TCGA-EE-A2A1-06 7 23830462 23830462 A G STK31 Missense_Mutation p.N886S 0.14 tolerated(0.14) benign(0.173) TCGA-EE-A2A1-06 7 26779529 26779529 C A SKAP2 Missense_Mutation p.G121V 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A1-06 7 27140855 27140855 G A HOXA2 Silent p.N207N 0.09 TCGA-EE-A2A1-06 7 2983953 2983953 C T CARD11 Missense_Mutation p.E193K 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A1-06 7 35130022 35130022 C T DPY19L2P1 RNA 0.14 TCGA-EE-A2A1-06 7 41739902 41739902 G A INHBA Missense_Mutation p.P24L 0.16 tolerated(0.07) probably_damaging(0.97) TCGA-EE-A2A1-06 7 57188025 57188025 G A ZNF479 Missense_Mutation p.S366L 0.13 deleterious(0.01) benign(0.097) TCGA-EE-A2A1-06 7 6205223 6205223 G A CYTH3 Missense_Mutation p.P309S 0.15 deleterious(0.02) possibly_damaging(0.738) TCGA-EE-A2A1-06 7 73245960 73245960 C T CLDN4 Silent p.I143I 0.15 TCGA-EE-A2A1-06 7 75517552 75517552 C T RHBDD2 Missense_Mutation p.S327F 0.15 deleterious(0) probably_damaging(0.963) TCGA-EE-A2A1-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.17 unknown(0) TCGA-EE-A2A1-06 7 82545020 82545020 G A PCLO Silent p.F4094F 0.22 TCGA-EE-A2A1-06 7 82585208 82585208 T C PCLO Silent p.K1687K 0.09 TCGA-EE-A2A1-06 7 87214866 87214866 C T ABCB1 Missense_Mutation p.G83E 0.13 tolerated(0.1) benign(0.041) TCGA-EE-A2A1-06 7 91630961 91630961 C T AKAP9 Missense_Mutation p.S577F 0.13 benign(0.038) TCGA-EE-A2A1-06 7 99801718 99801718 C T STAG3 Silent p.S925S 0.18 TCGA-EE-A2A1-06 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.09 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2A1-06 8 108315502 108315502 G A ANGPT1 Missense_Mutation p.T301I 0.18 deleterious(0.04) benign(0.052) TCGA-EE-A2A1-06 8 110487454 110487454 C T PKHD1L1 Missense_Mutation p.H2905Y 0.14 tolerated(0.1) benign(0.01) TCGA-EE-A2A1-06 8 110655043 110655043 G A SYBU Missense_Mutation p.P48L 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2A1-06 8 120744176 120744176 G A TAF2 Silent p.S1196S 0.10 TCGA-EE-A2A1-06 8 142505473 142505473 C T MROH5 Missense_Mutation p.E90K 0.18 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A2A1-06 8 144358683 144358683 C T GLI4 Silent p.S280S 0.22 TCGA-EE-A2A1-06 8 144808130 144808130 G A FAM83H Silent p.F1167F 0.09 TCGA-EE-A2A1-06 8 1876649 1876649 C T ARHGEF10 Silent p.S918S 0.11 TCGA-EE-A2A1-06 8 24300024 24300024 C T ADAM7 Missense_Mutation p.R31C 0.15 deleterious(0) possibly_damaging(0.533) TCGA-EE-A2A1-06 8 24342868 24342868 C T ADAM7 Silent p.I318I 0.09 TCGA-EE-A2A1-06 8 27382895 27382895 A - EPHX2 Frame_Shift_Del p.N359Ifs*43 0.12 TCGA-EE-A2A1-06 8 28309982 28309982 C T FBXO16 Silent p.K173K 0.18 TCGA-EE-A2A1-06 8 2836192 2836192 A T CSMD1 Silent p.S2836S 0.25 TCGA-EE-A2A1-06 8 37732621 37732621 G A RAB11FIP1 Missense_Mutation p.S345F 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2A1-06 8 37964684 37964684 C T ASH2L Missense_Mutation p.S134L 0.13 tolerated(0.08) benign(0.037) TCGA-EE-A2A1-06 8 39645705 39645705 T A ADAM2 Missense_Mutation p.K236N 0.17 deleterious(0) probably_damaging(0.94) TCGA-EE-A2A1-06 8 41555611 41555611 G A ANK1 Missense_Mutation p.P904S 0.27 tolerated(0.63) benign(0.003) TCGA-EE-A2A1-06 8 42612105 42612105 T C CHRNA6 Missense_Mutation p.K114E 0.15 tolerated(0.42) possibly_damaging(0.559) TCGA-EE-A2A1-06 8 52252213 52252213 G A PXDNL Nonsense_Mutation p.Q1373* 0.09 TCGA-EE-A2A1-06 8 70513989 70513989 G A SULF1 Missense_Mutation p.G329E 0.11 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A1-06 8 70513990 70513990 G A SULF1 Silent p.G329G 0.11 TCGA-EE-A2A1-06 8 88885871 88885871 G A DCAF4L2 Missense_Mutation p.P110L 0.18 tolerated(0.12) benign(0.019) TCGA-EE-A2A1-06 9 104449164 104449164 C T GRIN3A Missense_Mutation p.E340K 0.15 tolerated(0.08) benign(0.022) TCGA-EE-A2A1-06 9 131476899 131476899 C T PKN3 Missense_Mutation p.P514S 0.11 tolerated(0.33) possibly_damaging(0.543) TCGA-EE-A2A1-06 9 131599194 131599194 G A CCBL1 Missense_Mutation p.S192F 0.13 deleterious(0) probably_damaging(0.925) TCGA-EE-A2A1-06 9 136302909 136302909 G A ADAMTS13 Silent p.E492E 0.15 TCGA-EE-A2A1-06 9 139265127 139265127 C T CARD9 Missense_Mutation p.M218I 0.18 tolerated(0.15) benign(0.18) TCGA-EE-A2A1-06 9 21166123 21166123 G A IFNA21 Silent p.A163A 0.16 TCGA-EE-A2A1-06 9 2717765 2717765 G A KCNV2 Missense_Mutation p.R9Q 0.15 tolerated_low_confidence(0.05) benign(0.036) TCGA-EE-A2A1-06 9 33395188 33395188 G A AQP7 Missense_Mutation p.T11I 0.19 tolerated(0.05) benign(0.018) TCGA-EE-A2A1-06 9 34972400 34972400 C T KIAA1045 Missense_Mutation p.P146S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A1-06 9 35800785 35800785 C T NPR2 Missense_Mutation p.P433L 0.15 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A1-06 9 38413254 38413254 C G IGFBPL1 Missense_Mutation p.E223Q 0.17 tolerated(0.08) probably_damaging(0.95) TCGA-EE-A2A1-06 9 39171399 39171399 G A CNTNAP3 Nonsense_Mutation p.Q434* 0.19 TCGA-EE-A2A1-06 9 77343253 77343253 C T TRPM6 Missense_Mutation p.G1946E 0.13 tolerated(0.15) possibly_damaging(0.522) TCGA-EE-A2A1-06 9 79323049 79323049 C G PRUNE2 Missense_Mutation p.G1381R 0.10 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A2A1-06 9 80049306 80049306 G C GNA14 Missense_Mutation p.Q148E 0.16 deleterious(0) possibly_damaging(0.858) TCGA-EE-A2A1-06 9 80921375 80921375 C T PSAT1 Silent p.F181F 0.14 TCGA-EE-A2A1-06 9 847071 847071 C T DMRT1 Missense_Mutation p.P156S 0.20 tolerated(0.99) benign(0.006) TCGA-EE-A2A1-06 9 847072 847072 C T DMRT1 Missense_Mutation p.P156L 0.20 tolerated(0.33) benign(0.164) TCGA-EE-A2A1-06 9 99700263 99700263 G A NUTM2G Missense_Mutation p.E474K 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A1-06 X 100871242 100871242 A C ARMCX6 Missense_Mutation p.C123W 0.32 tolerated(0.1) benign(0.06) TCGA-EE-A2A1-06 X 100911641 100911641 G A ARMCX2 Missense_Mutation p.R312C 0.30 deleterious_low_confidence(0.02) benign(0.014) TCGA-EE-A2A1-06 X 102192924 102192924 C T RAB40AL Silent p.S226S 0.24 TCGA-EE-A2A1-06 X 105168832 105168832 G A NRK Missense_Mutation p.G1042R 0.22 tolerated(0.21) benign(0.017) TCGA-EE-A2A1-06 X 105280482 105280482 G A SERPINA7 Nonsense_Mutation p.Q190* 0.29 TCGA-EE-A2A1-06 X 111095588 111095588 C T TRPC5 Missense_Mutation p.D439N 0.26 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A1-06 X 118242374 118242374 C T KIAA1210 Missense_Mutation p.G280R 0.32 tolerated(0.1) possibly_damaging(0.534) TCGA-EE-A2A1-06 X 119249375 119249375 C T RHOXF1 Missense_Mutation p.R133K 0.18 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2A1-06 X 132161995 132161995 C T USP26 Missense_Mutation p.G85E 0.28 deleterious(0.03) benign(0.085) TCGA-EE-A2A1-06 X 30269259 30269259 G A MAGEB1 Missense_Mutation p.E217K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A1-06 X 35820500 35820500 G A MAGEB16 Missense_Mutation p.E63K 0.27 tolerated(0.09) benign(0.095) TCGA-EE-A2A1-06 X 37029243 37029243 G A FAM47C Silent p.G920G 0.27 TCGA-EE-A2A1-06 X 41205505 41205505 T C DDX3X Missense_Mutation p.F447L 0.23 deleterious(0) possibly_damaging(0.844) TCGA-EE-A2A1-06 X 49072880 49072880 C T CACNA1F Missense_Mutation p.M1077I 0.29 tolerated(0.06) benign(0.091) TCGA-EE-A2A1-06 X 50111995 50111995 G A DGKK RNA 0.33 TCGA-EE-A2A1-06 X 52825371 52825371 C T SPANXN5 3'UTR 0.21 TCGA-EE-A2A1-06 X 65486447 65486447 G A HEPH Missense_Mutation p.R1191K 0.19 tolerated_low_confidence(0.43) benign(0.02) TCGA-EE-A2A1-06 X 70511697 70511697 C T NONO Missense_Mutation p.R75C 0.35 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2A1-06 X 72667171 72667171 G A CDX4 Missense_Mutation p.G28R 0.23 tolerated(0.48) benign(0.329) TCGA-EE-A2A1-06 X 78011012 78011012 C T LPAR4 Missense_Mutation p.P216S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 10 101977836 101977836 G A CHUK Silent p.D283D 0.39 TCGA-EE-A2A2-06 10 102241672 102241672 G A WNT8B Missense_Mutation p.G124E 0.42 deleterious(0.03) possibly_damaging(0.819) TCGA-EE-A2A2-06 10 103755071 103755071 G A C10orf76 Missense_Mutation p.L398F 0.43 deleterious(0) probably_damaging(0.922) TCGA-EE-A2A2-06 10 105361498 105361498 C T SH3PXD2A 3'UTR 0.33 TCGA-EE-A2A2-06 10 105362047 105362047 C A SH3PXD2A Silent p.A948A 0.43 TCGA-EE-A2A2-06 10 105778666 105778666 G A SLK Silent p.K1044K 0.39 TCGA-EE-A2A2-06 10 105953657 105953657 G A WDR96 Missense_Mutation p.A470V 0.32 tolerated(1) benign(0.001) TCGA-EE-A2A2-06 10 106118174 106118174 G A CCDC147 Missense_Mutation p.E29K 0.42 deleterious(0.05) possibly_damaging(0.897) TCGA-EE-A2A2-06 10 106849544 106849544 G A SORCS3 Missense_Mutation p.G347E 0.42 deleterious(0) probably_damaging(0.951) TCGA-EE-A2A2-06 10 111648338 111648338 G A XPNPEP1 Missense_Mutation p.P144L 0.32 tolerated(0.09) benign(0.101) TCGA-EE-A2A2-06 10 112266753 112266753 T G DUSP5 Missense_Mutation p.C197G 0.34 tolerated(0.1) benign(0.012) TCGA-EE-A2A2-06 10 112635736 112635736 G A PDCD4 5'UTR 0.31 TCGA-EE-A2A2-06 10 116037803 116037803 C T VWA2 Missense_Mutation p.P233S 0.27 tolerated(0.1) benign(0.12) TCGA-EE-A2A2-06 10 119003629 119003629 G A SLC18A2 Missense_Mutation p.G90E 0.32 tolerated(0.73) benign(0.008) TCGA-EE-A2A2-06 10 122334746 122334746 C T PPAPDC1A Silent p.I183I 0.32 TCGA-EE-A2A2-06 10 123244982 123244982 G A FGFR2 Missense_Mutation p.P709S 0.31 deleterious(0) possibly_damaging(0.72) TCGA-EE-A2A2-06 10 123245004 123245004 C T FGFR2 Silent p.G701G 0.27 TCGA-EE-A2A2-06 10 123256077 123256077 G A FGFR2 Missense_Mutation p.A612V 0.30 deleterious(0) possibly_damaging(0.745) TCGA-EE-A2A2-06 10 124273729 124273729 G A HTRA1 Missense_Mutation p.V433I 0.36 tolerated(0.46) benign(0.114) TCGA-EE-A2A2-06 10 124358299 124358299 C T DMBT1 Missense_Mutation p.S989F 0.34 deleterious(0.01) possibly_damaging(0.854) TCGA-EE-A2A2-06 10 124377595 124377595 G A DMBT1 Missense_Mutation p.E1523K 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 10 124377832 124377832 G A DMBT1 Missense_Mutation p.E1602K 0.31 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A2A2-06 10 124392781 124392781 C T DMBT1 Missense_Mutation p.P2029S 0.28 deleterious(0.05) possibly_damaging(0.803) TCGA-EE-A2A2-06 10 124671195 124671195 C T FAM24A Silent p.I15I 0.30 TCGA-EE-A2A2-06 10 125447574 125447574 C T GPR26 Silent p.S304S 0.29 TCGA-EE-A2A2-06 10 126670317 126670317 T A ZRANB1 Silent p.S489S 0.33 TCGA-EE-A2A2-06 10 126670318 126670318 C T ZRANB1 Nonsense_Mutation p.Q490* 0.33 TCGA-EE-A2A2-06 10 126715000 126715000 G A CTBP2 Silent p.T443T 0.32 TCGA-EE-A2A2-06 10 13330486 13330489 CCTG A PHYH In_Frame_Del p.R184del 0.20 TCGA-EE-A2A2-06 10 134626288 134626288 C T TTC40 Splice_Site p.X2501_splice 0.38 TCGA-EE-A2A2-06 10 135020665 135020665 C T KNDC1 Silent p.L1202L 0.43 TCGA-EE-A2A2-06 10 135352476 135352476 G A CYP2E1 3'UTR 0.41 TCGA-EE-A2A2-06 10 135369180 135369180 C T SYCE1 Missense_Mutation p.E251K 0.31 tolerated(0.27) benign(0.311) TCGA-EE-A2A2-06 10 15107690 15107690 G A OLAH Silent p.K223K 0.32 TCGA-EE-A2A2-06 10 17153034 17153034 C T CUBN Missense_Mutation p.G300E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 10 17905630 17905630 G T MRC1L1 Missense_Mutation p.G574V 0.65 probably_damaging(0.958) TCGA-EE-A2A2-06 10 20290886 20290886 G A PLXDC2 Missense_Mutation p.D99N 0.20 tolerated(0.43) benign(0.031) TCGA-EE-A2A2-06 10 21250658 21250658 G A NEBL Silent p.I66I 0.20 TCGA-EE-A2A2-06 10 21435362 21435362 G A C10orf113 Silent p.L26L 0.19 TCGA-EE-A2A2-06 10 22676824 22676824 G A SPAG6 Missense_Mutation p.E251K 0.31 deleterious(0.02) benign(0.437) TCGA-EE-A2A2-06 10 25887347 25887347 C T GPR158 Missense_Mutation p.S931F 0.35 deleterious(0.02) benign(0.11) TCGA-EE-A2A2-06 10 26518625 26518625 C T GAD2 Silent p.I253I 0.35 TCGA-EE-A2A2-06 10 27507103 27507103 A T ACBD5 Missense_Mutation p.M212K 0.11 tolerated(0.86) benign(0.062) TCGA-EE-A2A2-06 10 27702574 27702574 C T PTCHD3 Silent p.R202R 0.35 TCGA-EE-A2A2-06 10 28228936 28228936 C T ARMC4 Missense_Mutation p.E663K 0.29 tolerated(0.52) benign(0.084) TCGA-EE-A2A2-06 10 29600029 29600029 G A LYZL1 3'UTR 0.37 TCGA-EE-A2A2-06 10 29747363 29747363 C T SVIL Silent p.E2186E 0.42 TCGA-EE-A2A2-06 10 31810320 31810320 C T ZEB1 Missense_Mutation p.S687F 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A2A2-06 10 35896618 35896618 G A GJD4 Silent p.P59P 0.32 TCGA-EE-A2A2-06 10 35928828 35928828 G A FZD8 Silent p.I510I 0.29 TCGA-EE-A2A2-06 10 37430981 37430981 G A ANKRD30A Missense_Mutation p.E330K 0.31 tolerated(0.82) benign(0.064) TCGA-EE-A2A2-06 10 408428 408428 A G DIP2C Splice_Site p.X932_splice 0.33 TCGA-EE-A2A2-06 10 43078542 43078542 C T ZNF33B RNA 0.31 TCGA-EE-A2A2-06 10 43615054 43615054 G A RET Missense_Mutation p.G823E 0.40 tolerated(0.21) possibly_damaging(0.49) TCGA-EE-A2A2-06 10 43617398 43617398 G A RET Missense_Mutation p.R912Q 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 10 45602557 45602557 A C RSU1P2 RNA 0.50 TCGA-EE-A2A2-06 10 45799539 45799539 G A OR13A1 Missense_Mutation p.S111F 0.40 deleterious(0) probably_damaging(0.98) TCGA-EE-A2A2-06 10 48371278 48371278 C T ZNF488 Missense_Mutation p.P249L 0.44 tolerated(0.08) benign(0.066) TCGA-EE-A2A2-06 10 48413663 48413663 G A GDF2 Missense_Mutation p.S402F 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 10 48413860 48413860 G A GDF2 Silent p.F336F 0.30 TCGA-EE-A2A2-06 10 49654486 49654486 G A ARHGAP22 Missense_Mutation p.S698L 0.27 deleterious(0) benign(0.089) TCGA-EE-A2A2-06 10 50531756 50531756 A T C10orf71 Missense_Mutation p.K389I 0.37 deleterious(0.01) benign(0.331) TCGA-EE-A2A2-06 10 51580659 51580661 AGG GA NCOA4 Frame_Shift_Del p.E98Gfs*33 0.12 TCGA-EE-A2A2-06 10 52103386 52103386 C T SGMS1 Silent p.K163K 0.36 TCGA-EE-A2A2-06 10 52575934 52575934 C T A1CF Missense_Mutation p.G333R 0.15 tolerated(0.12) probably_damaging(0.915) TCGA-EE-A2A2-06 10 54040672 54040672 C T PRKG1 Silent p.H509H 0.20 TCGA-EE-A2A2-06 10 55582777 55582777 A C PCDH15 Missense_Mutation p.I1572S 0.38 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A2A2-06 10 61829923 61829923 T G ANK3 Missense_Mutation p.E3572D 0.32 benign(0.001) TCGA-EE-A2A2-06 10 61830110 61830110 G A ANK3 Missense_Mutation p.P3510L 0.48 probably_damaging(0.994) TCGA-EE-A2A2-06 10 61834193 61834193 G A ANK3 Missense_Mutation p.P2149L 0.29 probably_damaging(0.994) TCGA-EE-A2A2-06 10 61848032 61848032 G A ANK3 Missense_Mutation p.S1138F 0.25 probably_damaging(1) TCGA-EE-A2A2-06 10 61874073 61874073 C T ANK3 Missense_Mutation p.R953K 0.23 benign(0.001) TCGA-EE-A2A2-06 10 64135994 64135994 G A ZNF365 Silent p.Q14Q 0.36 TCGA-EE-A2A2-06 10 64148314 64148314 C T ZNF365 Silent p.V301V 0.35 TCGA-EE-A2A2-06 10 64565099 64565099 G A ADO Missense_Mutation p.D94N 0.34 tolerated(0.22) benign(0.005) TCGA-EE-A2A2-06 10 68526055 68526055 C T CTNNA3 Silent p.A416A 0.27 TCGA-EE-A2A2-06 10 68940089 68940089 C T CTNNA3 Missense_Mutation p.E345K 0.35 tolerated(0.05) possibly_damaging(0.621) TCGA-EE-A2A2-06 10 69750152 69750152 T G HERC4 Silent p.A483A 0.39 TCGA-EE-A2A2-06 10 70333459 70333459 C T TET1 Missense_Mutation p.T455I 0.35 deleterious(0.04) benign(0.075) TCGA-EE-A2A2-06 10 71902467 71902467 G A TYSND1 Silent p.S480S 0.43 TCGA-EE-A2A2-06 10 72324241 72324241 C T PALD1 Missense_Mutation p.S795F 0.29 deleterious(0.02) benign(0.098) TCGA-EE-A2A2-06 10 73057803 73057803 G A UNC5B Silent p.R876R 0.31 TCGA-EE-A2A2-06 10 73544845 73544845 C T CDH23 Silent p.F1905F 0.30 TCGA-EE-A2A2-06 10 75037955 75037955 C T TTC18 Missense_Mutation p.E864K 0.36 tolerated(0.32) benign(0.001) TCGA-EE-A2A2-06 10 75397610 75397610 T C MYOZ1 Silent p.E48E 0.43 TCGA-EE-A2A2-06 10 78850193 78850193 C T KCNMA1 Silent p.R433R 0.26 TCGA-EE-A2A2-06 10 79581657 79581657 C T DLG5 Missense_Mutation p.G862E 0.43 tolerated(0.39) benign(0.23) TCGA-EE-A2A2-06 10 81918919 81918919 C T ANXA11 Missense_Mutation p.D405N 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2A2-06 10 87362080 87362080 C T GRID1 Missense_Mutation p.G994R 0.39 deleterious_low_confidence(0.04) benign(0.037) TCGA-EE-A2A2-06 10 88696449 88696449 C T MMRN2 3'UTR 0.34 TCGA-EE-A2A2-06 10 88696450 88696450 C T MMRN2 3'UTR 0.33 TCGA-EE-A2A2-06 10 88769587 88769587 C T RP11-96C23.10 RNA 0.25 TCGA-EE-A2A2-06 10 93614874 93614874 G A TNKS2 Silent p.V968V 0.41 TCGA-EE-A2A2-06 10 93718859 93718859 T C BTAF1 Missense_Mutation p.L313P 0.31 deleterious(0) probably_damaging(0.91) TCGA-EE-A2A2-06 10 94669218 94669218 G A EXOC6 Missense_Mutation p.E165K 0.32 deleterious(0) probably_damaging(0.917) TCGA-EE-A2A2-06 10 95720216 95720216 G A PIPSL RNA 0.39 TCGA-EE-A2A2-06 10 96495027 96495027 G A CYP2C18 Silent p.R433R 0.36 TCGA-EE-A2A2-06 10 96971703 96971703 C T C10orf129 Missense_Mutation p.S275F 0.35 deleterious(0.02) benign(0.245) TCGA-EE-A2A2-06 10 97096857 97096857 G A SORBS1 Silent p.H1020H 0.31 TCGA-EE-A2A2-06 10 98092300 98092300 C T DNTT Silent p.L436L 0.46 TCGA-EE-A2A2-06 10 98715083 98715083 C T LCOR Nonsense_Mutation p.Q236* 0.30 TCGA-EE-A2A2-06 10 99349981 99349981 C T C10orf62 Silent p.I109I 0.32 TCGA-EE-A2A2-06 10 99349982 99349982 C T C10orf62 Missense_Mutation p.H110Y 0.32 tolerated(0.2) possibly_damaging(0.477) TCGA-EE-A2A2-06 11 100179193 100179193 G A CNTN5 Missense_Mutation p.G908E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 11 100999653 100999653 G A PGR Missense_Mutation p.A50V 0.48 tolerated_low_confidence(0.13) benign(0.36) TCGA-EE-A2A2-06 11 101375371 101375371 T C TRPC6 Missense_Mutation p.N110S 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 11 101833960 101833960 G A KIAA1377 Missense_Mutation p.E732K 0.17 tolerated(0.08) benign(0.291) TCGA-EE-A2A2-06 11 102650355 102650355 C T MMP10 Missense_Mutation p.G76E 0.21 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A2A2-06 11 102661089 102661089 G A MMP1 3'UTR 0.36 TCGA-EE-A2A2-06 11 103025222 103025222 C T DYNC2H1 Silent p.S1115S 0.39 TCGA-EE-A2A2-06 11 103027349 103027349 C T DYNC2H1 Missense_Mutation p.S1326L 0.64 benign(0.071) TCGA-EE-A2A2-06 11 10647749 10647749 C T MRVI1 Missense_Mutation p.A378T 0.47 tolerated(0.21) benign(0.007) TCGA-EE-A2A2-06 11 108155011 108155011 G A ATM Silent p.V1268V 0.18 TCGA-EE-A2A2-06 11 1087447 1087447 G A MUC2 Silent p.V1066V 0.27 TCGA-EE-A2A2-06 11 111405324 111405324 G A C11orf88 Intron 0.51 TCGA-EE-A2A2-06 11 113269692 113269692 G A ANKK1 Missense_Mutation p.G334E 0.18 tolerated(0.29) benign(0.018) TCGA-EE-A2A2-06 11 116633924 116633924 A T BUD13 Silent p.S127S 0.47 TCGA-EE-A2A2-06 11 117063866 117063866 C T SIDT2 Intron 0.46 TCGA-EE-A2A2-06 11 118373290 118373290 C T KMT2A Missense_Mutation p.S2228F 0.50 possibly_damaging(0.851) TCGA-EE-A2A2-06 11 119027056 119027056 C T ABCG4 Missense_Mutation p.S235F 0.24 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2A2-06 11 120008368 120008368 C T TRIM29 Silent p.K124K 0.48 TCGA-EE-A2A2-06 11 121477909 121477909 G A SORL1 Silent p.R1692R 0.14 TCGA-EE-A2A2-06 11 122647763 122647763 G A UBASH3B Missense_Mutation p.D83N 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2A2-06 11 122931379 122931379 G A HSPA8 Silent p.T111T 0.24 TCGA-EE-A2A2-06 11 123448136 123448136 C T GRAMD1B Missense_Mutation p.R29C 0.39 tolerated(0.18) possibly_damaging(0.852) TCGA-EE-A2A2-06 11 123908820 123908820 C T OR10G7 Missense_Mutation p.A297T 0.24 deleterious(0.02) benign(0.102) TCGA-EE-A2A2-06 11 123993780 123993780 A G VWA5A Missense_Mutation p.M292V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 11 124253044 124253044 G A OR8B2 Missense_Mutation p.L66F 0.37 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2A2-06 11 124266729 124266729 G A OR8B3 Silent p.I173I 0.48 TCGA-EE-A2A2-06 11 124481452 124481452 C T PANX3 5'UTR 0.51 TCGA-EE-A2A2-06 11 124749423 124749423 C T ROBO3 Missense_Mutation p.R1250W 0.21 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-EE-A2A2-06 11 125618763 125618763 C T PATE1 3'UTR 0.50 TCGA-EE-A2A2-06 11 130342957 130342957 C T ADAMTS15 Silent p.F698F 0.45 TCGA-EE-A2A2-06 11 1629200 1629200 G A KRTAP5-3 Missense_Mutation p.S139L 0.21 deleterious(0.01) unknown(0) TCGA-EE-A2A2-06 11 18764004 18764004 G A PTPN5 Missense_Mutation p.P177L 0.27 tolerated(0.4) benign(0.003) TCGA-EE-A2A2-06 11 18955414 18955414 C T MRGPRX1 Silent p.G306G 0.49 TCGA-EE-A2A2-06 11 25004772 25004772 C T LUZP2 Missense_Mutation p.P233L 0.40 deleterious(0.02) benign(0.009) TCGA-EE-A2A2-06 11 26584715 26584715 C T MUC15 Silent p.R291R 0.32 TCGA-EE-A2A2-06 11 33308557 33308557 C T HIPK3 Silent p.V199V 0.43 TCGA-EE-A2A2-06 11 33667329 33667329 C T KIAA1549L Missense_Mutation p.S1539F 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 11 34097853 34097853 T G CAPRIN1 Nonsense_Mutation p.L146* 0.57 TCGA-EE-A2A2-06 11 35492367 35492367 C T PAMR1 Splice_Site p.X165_splice 0.22 TCGA-EE-A2A2-06 11 397181 397181 G A PKP3 Missense_Mutation p.G227E 0.49 deleterious(0.03) benign(0.125) TCGA-EE-A2A2-06 11 43284006 43284006 C T HNRNPKP3 RNA 0.39 TCGA-EE-A2A2-06 11 44072949 44072949 G A ACCSL Missense_Mutation p.E234K 0.52 deleterious(0.01) possibly_damaging(0.674) TCGA-EE-A2A2-06 11 4407465 4407465 C T TRIM21 Missense_Mutation p.D261N 0.20 tolerated(0.08) benign(0) TCGA-EE-A2A2-06 11 4510322 4510322 T G OR52K1 Missense_Mutation p.F64L 0.44 deleterious(0.01) benign(0.101) TCGA-EE-A2A2-06 11 4510323 4510323 C T OR52K1 Silent p.L65L 0.43 TCGA-EE-A2A2-06 11 4566873 4566873 C T OR52M1 Silent p.L151L 0.12 TCGA-EE-A2A2-06 11 4661414 4661414 G A OR51D1 Missense_Mutation p.A132T 0.36 deleterious(0) possibly_damaging(0.562) TCGA-EE-A2A2-06 11 46894889 46894889 C T LRP4 Intron 0.23 TCGA-EE-A2A2-06 11 4790956 4790956 G A OR51F1 Silent p.F64F 0.29 TCGA-EE-A2A2-06 11 48238452 48238452 C T OR4B1 Missense_Mutation p.P31S 0.43 tolerated(0.08) benign(0.072) TCGA-EE-A2A2-06 11 48511177 48511177 C T OR4A47 Missense_Mutation p.P278L 0.18 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-EE-A2A2-06 11 49178313 49178313 G A FOLH1 Nonsense_Mutation p.R527* 0.17 TCGA-EE-A2A2-06 11 49207377 49207377 C T FOLH1 Missense_Mutation p.G224R 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 11 4976213 4976213 G A OR51A2 Missense_Mutation p.S244L 0.15 deleterious(0) probably_damaging(0.969) TCGA-EE-A2A2-06 11 5172912 5172912 G A OR52A1 Missense_Mutation p.R230C 0.22 deleterious(0.03) benign(0.052) TCGA-EE-A2A2-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.15 tolerated(0.65) benign(0.008) TCGA-EE-A2A2-06 11 5345263 5345263 C T OR51B2 Missense_Mutation p.E89K 0.28 tolerated(0.07) benign(0.009) TCGA-EE-A2A2-06 11 5364499 5364499 C T OR51B5 Missense_Mutation p.D86N 0.32 tolerated(1) benign(0.004) TCGA-EE-A2A2-06 11 5364578 5364578 G A OR51B5 Silent p.F59F 0.42 TCGA-EE-A2A2-06 11 5444253 5444253 C T OR51Q1 Missense_Mutation p.H275Y 0.60 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A2-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.50 deleterious_low_confidence(0) benign(0.072) TCGA-EE-A2A2-06 11 55322224 55322224 G A OR4C15 Missense_Mutation p.E148K 0.22 tolerated_low_confidence(0.48) benign(0.003) TCGA-EE-A2A2-06 11 55322738 55322738 C T OR4C15 Missense_Mutation p.S319F 0.45 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-EE-A2A2-06 11 5537200 5537200 T C UBQLNL Missense_Mutation p.K158E 0.46 tolerated(0.14) benign(0.194) TCGA-EE-A2A2-06 11 55579712 55579712 C T OR5L1 Missense_Mutation p.S257F 0.20 tolerated(1) benign(0.003) TCGA-EE-A2A2-06 11 55579833 55579833 G A OR5L1 Silent p.V297V 0.46 TCGA-EE-A2A2-06 11 55594973 55594973 C T OR5L2 Silent p.S93S 0.15 TCGA-EE-A2A2-06 11 55735136 55735136 G A OR10AG1 Silent p.F268F 0.18 TCGA-EE-A2A2-06 11 55735289 55735289 C T OR10AG1 Silent p.L217L 0.35 TCGA-EE-A2A2-06 11 55762055 55762055 C T OR5F1 Missense_Mutation p.G16E 0.41 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 11 55889918 55889918 G T OR8H3 Missense_Mutation p.V24F 0.18 deleterious(0.02) benign(0.003) TCGA-EE-A2A2-06 11 5624743 5624743 C G TRIM6 Missense_Mutation p.N95K 0.25 tolerated(0.06) possibly_damaging(0.622) TCGA-EE-A2A2-06 11 57004260 57004260 C T APLNR Silent p.V73V 0.46 TCGA-EE-A2A2-06 11 57068486 57068486 A C TNKS1BP1 Silent p.A1667A 0.46 TCGA-EE-A2A2-06 11 58126362 58126362 G A OR5B17 Missense_Mutation p.L61F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-EE-A2A2-06 11 58723508 58723508 A T GLYATL1 3'UTR 0.40 TCGA-EE-A2A2-06 11 59189564 59189564 G A OR5A2 Missense_Mutation p.P288L 0.10 deleterious(0) probably_damaging(0.95) TCGA-EE-A2A2-06 11 59423460 59423460 A - PATL1 Frame_Shift_Del p.L261Pfs*36 0.25 TCGA-EE-A2A2-06 11 59423462 59423462 G A PATL1 Silent p.P260P 0.25 TCGA-EE-A2A2-06 11 5969381 5969381 A G OR56A3 Missense_Mutation p.K269E 0.20 tolerated(0.49) benign(0.033) TCGA-EE-A2A2-06 11 6007457 6007457 G A OR52L1 Missense_Mutation p.S235F 0.24 deleterious(0) benign(0.133) TCGA-EE-A2A2-06 11 6024169 6024169 G A OR56A4 Silent p.I70I 0.51 TCGA-EE-A2A2-06 11 6048713 6048713 G A OR56A1 Silent p.S74S 0.25 TCGA-EE-A2A2-06 11 60689575 60689575 G A TMEM109 Missense_Mutation p.E224K 0.51 deleterious(0.01) benign(0.321) TCGA-EE-A2A2-06 11 61404442 61404442 G A RPLP0P2 RNA 0.22 TCGA-EE-A2A2-06 11 61959676 61959676 G A SCGB1D1 Silent p.T68T 0.55 TCGA-EE-A2A2-06 11 62288902 62288902 G - AHNAK Frame_Shift_Del p.F4329Lfs*50 0.34 TCGA-EE-A2A2-06 11 62346322 62346322 C T TUT1 Missense_Mutation p.D329N 0.48 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2A2-06 11 62346323 62346323 C T TUT1 Silent p.P328P 0.49 TCGA-EE-A2A2-06 11 62782229 62782229 C T SLC22A8 Missense_Mutation p.G68R 0.48 tolerated(0.07) possibly_damaging(0.903) TCGA-EE-A2A2-06 11 6291139 6291139 C T CCKBR Missense_Mutation p.S131F 0.48 deleterious(0.01) possibly_damaging(0.608) TCGA-EE-A2A2-06 11 62996845 62996845 G A SLC22A25 Missense_Mutation p.P94S 0.10 deleterious(0.03) possibly_damaging(0.468) TCGA-EE-A2A2-06 11 63064812 63064812 C T SLC22A10 Nonsense_Mutation p.Q182* 0.53 TCGA-EE-A2A2-06 11 63064898 63064898 C T SLC22A10 Silent p.S210S 0.19 TCGA-EE-A2A2-06 11 63067078 63067078 G A SLC22A10 Silent p.R349R 0.70 TCGA-EE-A2A2-06 11 64084949 64084949 C T TRMT112 Missense_Mutation p.G17E 0.21 tolerated(1) benign(0.055) TCGA-EE-A2A2-06 11 64136992 64136992 C T RPS6KA4 Silent p.F501F 0.48 TCGA-EE-A2A2-06 11 6424924 6424924 C T APBB1 Missense_Mutation p.G284S 0.44 tolerated(0.44) benign(0.064) TCGA-EE-A2A2-06 11 64519430 64519430 G A PYGM Silent p.L578L 0.25 TCGA-EE-A2A2-06 11 64525731 64525731 G A PYGM Missense_Mutation p.S172F 0.22 tolerated(0.05) benign(0.134) TCGA-EE-A2A2-06 11 64669436 64669436 G A ATG2A Missense_Mutation p.P1373S 0.43 tolerated(0.46) benign(0.007) TCGA-EE-A2A2-06 11 64669437 64669437 G A ATG2A Silent p.I1372I 0.42 TCGA-EE-A2A2-06 11 64764438 64764438 C T BATF2 5'UTR 0.51 TCGA-EE-A2A2-06 11 64812753 64812753 G A NAALADL1 Missense_Mutation p.A738V 0.24 deleterious(0) possibly_damaging(0.448) TCGA-EE-A2A2-06 11 65266878 65266878 T C MALAT1 RNA 0.49 TCGA-EE-A2A2-06 11 65267853 65267853 A G MALAT1 RNA 0.46 TCGA-EE-A2A2-06 11 65313968 65313968 G A LTBP3 Silent p.F766F 0.48 TCGA-EE-A2A2-06 11 65367187 65367187 G A MAP3K11 Silent p.P628P 0.25 TCGA-EE-A2A2-06 11 65367188 65367188 G A MAP3K11 Missense_Mutation p.P628L 0.25 deleterious(0.05) benign(0.015) TCGA-EE-A2A2-06 11 654029 654029 C T DEAF1 Missense_Mutation p.R509Q 0.47 deleterious(0.01) possibly_damaging(0.825) TCGA-EE-A2A2-06 11 66006668 66006668 C G PACS1 Silent p.P783P 0.41 TCGA-EE-A2A2-06 11 66328765 66328765 A T CTSF 3'Flank 0.41 TCGA-EE-A2A2-06 11 6646552 6646552 C T DCHS1 Silent p.Q2341Q 0.51 TCGA-EE-A2A2-06 11 67222957 67222957 C T CABP4 Silent p.P21P 0.25 TCGA-EE-A2A2-06 11 68475735 68475735 C T MTL5 3'UTR 0.25 TCGA-EE-A2A2-06 11 6913093 6913093 C T OR2D2 Silent p.L213L 0.24 TCGA-EE-A2A2-06 11 70338455 70338455 C T SHANK2 Silent p.A809A 0.23 TCGA-EE-A2A2-06 11 7064277 7064277 C T NLRP14 Silent p.Y340Y 0.22 TCGA-EE-A2A2-06 11 71715117 71715117 C T NUMA1 Missense_Mutation p.S2051N 0.46 benign(0.015) TCGA-EE-A2A2-06 11 71940600 71940600 C T INPPL1 Nonsense_Mutation p.Q251* 0.23 TCGA-EE-A2A2-06 11 72408418 72408418 G A ARAP1 Missense_Mutation p.S968L 0.47 tolerated(0.07) benign(0.002) TCGA-EE-A2A2-06 11 73681102 73681102 C T DNAJB13 Silent p.F298F 0.49 TCGA-EE-A2A2-06 11 74977201 74977201 G A ARRB1 3'UTR 0.51 TCGA-EE-A2A2-06 11 758967 758967 T A TALDO1 Missense_Mutation p.I80N 0.43 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A2-06 11 77910659 77910659 C T USP35 Silent p.S275S 0.50 TCGA-EE-A2A2-06 11 7817549 7817549 C T OR5P2 Missense_Mutation p.S314N 0.57 tolerated_low_confidence(0.26) benign(0.005) TCGA-EE-A2A2-06 11 78383140 78383140 C T TENM4 Missense_Mutation p.G1911S 0.27 deleterious(0.01) possibly_damaging(0.671) TCGA-EE-A2A2-06 11 78387371 78387371 G C TENM4 Missense_Mutation p.N1774K 0.45 deleterious(0.01) possibly_damaging(0.593) TCGA-EE-A2A2-06 11 78443510 78443510 C T TENM4 Missense_Mutation p.E997K 0.41 deleterious(0) benign(0.063) TCGA-EE-A2A2-06 11 78482078 78482078 G A TENM4 Missense_Mutation p.S833F 0.62 deleterious(0.05) benign(0.139) TCGA-EE-A2A2-06 11 7981382 7981382 C T NLRP10 Missense_Mutation p.E593K 0.36 tolerated(0.42) benign(0.006) TCGA-EE-A2A2-06 11 8016890 8016890 G A EIF3F Silent p.E324E 0.52 TCGA-EE-A2A2-06 11 803208 803208 G A PIDD Silent p.A225A 0.48 TCGA-EE-A2A2-06 11 82935899 82935899 C T ANKRD42 Missense_Mutation p.H169Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 11 85420485 85420485 C T SYTL2 Missense_Mutation p.G968E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 11 85468696 85468696 G A SYTL2 Silent p.L25L 0.22 TCGA-EE-A2A2-06 11 89407302 89407302 G A FOLH1B RNA 0.09 TCGA-EE-A2A2-06 11 93822030 93822030 G A HEPHL1 Silent p.G730G 0.42 TCGA-EE-A2A2-06 11 9462133 9462133 G A IPO7 Missense_Mutation p.E943K 0.50 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A2-06 11 94731230 94731230 C T KDM4D Missense_Mutation p.P232S 0.22 deleterious(0.02) possibly_damaging(0.646) TCGA-EE-A2A2-06 11 94862602 94862602 C T ENDOD1 Silent p.D454D 0.49 TCGA-EE-A2A2-06 11 99690324 99690324 A G CNTN5 Silent p.L35L 0.28 TCGA-EE-A2A2-06 12 10010159 10010159 T C CLEC2B Missense_Mutation p.K51E 0.15 tolerated(1) benign(0.002) TCGA-EE-A2A2-06 12 101573822 101573822 C T SLC5A8 Missense_Mutation p.M406I 0.16 deleterious(0.03) benign(0.344) TCGA-EE-A2A2-06 12 104033936 104033936 C T STAB2 Silent p.F314F 0.46 TCGA-EE-A2A2-06 12 104149490 104149490 C T STAB2 Silent p.F2327F 0.52 TCGA-EE-A2A2-06 12 10541470 10541470 G A KLRK1 5'UTR 0.39 TCGA-EE-A2A2-06 12 108045516 108045516 G A BTBD11 Silent p.A1019A 0.53 TCGA-EE-A2A2-06 12 109644522 109644522 C T ACACB Missense_Mutation p.P974L 0.17 tolerated(0.49) benign(0.021) TCGA-EE-A2A2-06 12 10978338 10978338 C A TAS2R10 Missense_Mutation p.L177F 0.32 tolerated(0.73) benign(0.06) TCGA-EE-A2A2-06 12 109881337 109881337 A T MYO1H Nonsense_Mutation p.K887* 0.25 TCGA-EE-A2A2-06 12 110812066 110812066 G A ANAPC7 Silent p.A561A 0.44 TCGA-EE-A2A2-06 12 111089095 111089095 G A HVCN1 Silent p.F190F 0.31 TCGA-EE-A2A2-06 12 111785931 111785931 C T CUX2 Silent p.S1421S 0.22 TCGA-EE-A2A2-06 12 112371783 112371783 C A TMEM116 Missense_Mutation p.G214C 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A2-06 12 113333679 113333679 G C RPH3A Splice_Site p.X652_splice 0.28 TCGA-EE-A2A2-06 12 113403602 113403602 C T OAS3 Silent p.L819L 0.31 TCGA-EE-A2A2-06 12 113496244 113496244 C T DTX1 Missense_Mutation p.R83C 0.51 deleterious(0) benign(0.16) TCGA-EE-A2A2-06 12 113532612 113532612 G A DTX1 Missense_Mutation p.E416K 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 12 113537799 113537799 G A RASAL1 Missense_Mutation p.R786C 0.23 deleterious(0.04) possibly_damaging(0.828) TCGA-EE-A2A2-06 12 117669901 117669901 G T NOS1 Missense_Mutation p.P1125T 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 12 117685236 117685236 C T NOS1 Missense_Mutation p.E948K 0.22 deleterious(0.04) possibly_damaging(0.724) TCGA-EE-A2A2-06 12 117696935 117696935 C T NOS1 Missense_Mutation p.V790M 0.48 deleterious(0.03) possibly_damaging(0.776) TCGA-EE-A2A2-06 12 117977675 117977675 A T KSR2 Silent p.P512P 0.19 TCGA-EE-A2A2-06 12 119568606 119568606 C T SRRM4 Silent p.L246L 0.52 TCGA-EE-A2A2-06 12 120578756 120578756 G A GCN1L1 Silent p.I1967I 0.23 TCGA-EE-A2A2-06 12 121205252 121205252 G A SPPL3 Silent p.S306S 0.50 TCGA-EE-A2A2-06 12 121471316 121471316 C T OASL Silent p.R143R 0.22 TCGA-EE-A2A2-06 12 121471317 121471317 C T OASL Missense_Mutation p.R143K 0.22 tolerated(0.8) benign(0.002) TCGA-EE-A2A2-06 12 121880394 121880394 C T KDM2B Silent p.L950L 0.26 TCGA-EE-A2A2-06 12 122669159 122669159 G A LRRC43 Missense_Mutation p.E82K 0.24 deleterious(0) probably_damaging(0.94) TCGA-EE-A2A2-06 12 123095366 123095366 C T KNTC1 Intron 0.46 TCGA-EE-A2A2-06 12 123476369 123476369 G A PITPNM2 Intron 0.26 TCGA-EE-A2A2-06 12 123805410 123805410 G A SBNO1 Missense_Mutation p.P776L 0.22 tolerated(0.06) probably_damaging(0.987) TCGA-EE-A2A2-06 12 124191370 124191370 C T TCTN2 Missense_Mutation p.P623S 0.45 deleterious(0.03) possibly_damaging(0.893) TCGA-EE-A2A2-06 12 124341782 124341782 C T DNAH10 Silent p.V2088V 0.48 TCGA-EE-A2A2-06 12 126135361 126135361 C T TMEM132B Silent p.T587T 0.40 TCGA-EE-A2A2-06 12 130897293 130897293 C T RIMBP2 Missense_Mutation p.E898K 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A2-06 12 130935832 130935832 G A RIMBP2 Missense_Mutation p.L121F 0.43 tolerated(0.2) benign(0.013) TCGA-EE-A2A2-06 12 130935833 130935833 G A RIMBP2 Silent p.P120P 0.43 TCGA-EE-A2A2-06 12 132425867 132425867 C T PUS1 Missense_Mutation p.S192F 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 12 132624299 132624299 G A DDX51 Nonsense_Mutation p.R619* 0.47 TCGA-EE-A2A2-06 12 132629495 132629495 C T NOC4L Missense_Mutation p.P72S 0.26 deleterious(0.01) possibly_damaging(0.829) TCGA-EE-A2A2-06 12 14827660 14827660 C A GUCY2C Missense_Mutation p.G328V 0.31 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A2A2-06 12 15823810 15823810 T A EPS8 Missense_Mutation p.I62L 0.45 deleterious(0.03) benign(0.01) TCGA-EE-A2A2-06 12 18890395 18890395 C T PLCZ1 5'UTR 0.73 TCGA-EE-A2A2-06 12 20774250 20774250 C T PDE3A Missense_Mutation p.P482L 0.54 deleterious(0) benign(0.15) TCGA-EE-A2A2-06 12 21036506 21036506 G A SLCO1B3 Missense_Mutation p.G551E 0.33 deleterious(0) probably_damaging(0.973) TCGA-EE-A2A2-06 12 21727174 21727174 C T GYS2 Silent p.R194R 0.44 TCGA-EE-A2A2-06 12 32871635 32871635 C T DNM1L Silent p.A226A 0.60 TCGA-EE-A2A2-06 12 3763391 3763391 G A EFCAB4B Nonsense_Mutation p.Q345* 0.44 TCGA-EE-A2A2-06 12 38714324 38714324 T A ALG10B Missense_Mutation p.F244Y 0.21 tolerated(0.14) benign(0.148) TCGA-EE-A2A2-06 12 39973353 39973353 G A ABCD2 Missense_Mutation p.R621C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 12 40076547 40076547 G A C12orf40 Missense_Mutation p.G274E 0.40 tolerated(0.16) possibly_damaging(0.65) TCGA-EE-A2A2-06 12 40653358 40653358 C G LRRK2 Missense_Mutation p.P499A 0.20 tolerated(0.54) benign(0) TCGA-EE-A2A2-06 12 41312506 41312506 G A CNTN1 Missense_Mutation p.E54K 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2A2-06 12 43847717 43847717 G A ADAMTS20 Missense_Mutation p.R585C 0.60 deleterious(0) probably_damaging(0.947) TCGA-EE-A2A2-06 12 43945032 43945032 G A ADAMTS20 Missense_Mutation p.P45S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 12 4446225 4446225 C T C12orf5 Missense_Mutation p.L31F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 12 45059387 45059387 C T NELL2 Missense_Mutation p.D492N 0.22 tolerated(0.05) probably_damaging(0.99) TCGA-EE-A2A2-06 12 46246056 46246056 C T ARID2 Missense_Mutation p.H1384Y 0.27 tolerated_low_confidence(0.42) benign(0.094) TCGA-EE-A2A2-06 12 463244 463244 C T KDM5A Missense_Mutation p.E343K 0.23 tolerated(0.07) benign(0.183) TCGA-EE-A2A2-06 12 46601355 46601355 C T SLC38A1 Silent p.G146G 0.40 TCGA-EE-A2A2-06 12 4702284 4702284 A C DYRK4 Missense_Mutation p.K79Q 0.47 tolerated(0.47) benign(0.211) TCGA-EE-A2A2-06 12 47186741 47186741 C T SLC38A4 Missense_Mutation p.M38I 0.33 tolerated(0.94) benign(0.001) TCGA-EE-A2A2-06 12 4724902 4724902 C T AKAP3 3'UTR 0.43 TCGA-EE-A2A2-06 12 48191260 48191260 C T HDAC7 Missense_Mutation p.E162K 0.47 tolerated(0.59) possibly_damaging(0.46) TCGA-EE-A2A2-06 12 48723366 48723366 G A H1FNT Missense_Mutation p.E98K 0.44 tolerated(0.11) benign(0.003) TCGA-EE-A2A2-06 12 48962956 48962956 C T LALBA Silent p.T67T 0.25 TCGA-EE-A2A2-06 12 49087349 49087349 G A CCNT1 Nonsense_Mutation p.Q550* 0.45 TCGA-EE-A2A2-06 12 49421018 49421018 G A KMT2D Missense_Mutation p.P4911S 0.25 unknown(0) TCGA-EE-A2A2-06 12 49432566 49432566 G A KMT2D Missense_Mutation p.S2858F 0.17 possibly_damaging(0.607) TCGA-EE-A2A2-06 12 50025701 50025701 C T PRPF40B Missense_Mutation p.T96I 0.43 tolerated(0.25) unknown(0) TCGA-EE-A2A2-06 12 50189689 50189689 G C NCKAP5L Missense_Mutation p.R652G 0.25 tolerated(0.1) probably_damaging(0.964) TCGA-EE-A2A2-06 12 51584014 51584014 G A POU6F1 3'UTR 0.28 TCGA-EE-A2A2-06 12 52156341 52156341 C T SCN8A Missense_Mutation p.P809S 0.46 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A2-06 12 52284813 52284813 G A ANKRD33 Silent p.G361G 0.45 TCGA-EE-A2A2-06 12 52646107 52646107 G A KRT7 3'Flank 0.49 TCGA-EE-A2A2-06 12 52938154 52938154 C T KRT71 3'UTR 0.46 TCGA-EE-A2A2-06 12 52943862 52943862 C T KRT71 Missense_Mutation p.D203N 0.43 deleterious(0.04) possibly_damaging(0.595) TCGA-EE-A2A2-06 12 53202120 53202120 C T KRT4 Missense_Mutation p.M361I 0.16 deleterious(0.05) benign(0.006) TCGA-EE-A2A2-06 12 53664583 53664583 G A ESPL1 Splice_Site p.X457_splice 0.24 TCGA-EE-A2A2-06 12 54686416 54686416 C T NFE2 Silent p.L288L 0.60 TCGA-EE-A2A2-06 12 54795606 54795606 G A ITGA5 Missense_Mutation p.L754F 0.46 tolerated(0.09) probably_damaging(1) TCGA-EE-A2A2-06 12 54799016 54799016 C T ITGA5 Missense_Mutation p.D387N 0.51 deleterious(0.01) benign(0.075) TCGA-EE-A2A2-06 12 54901693 54901693 C T NCKAP1L Silent p.I121I 0.17 TCGA-EE-A2A2-06 12 55420303 55420303 C T NEUROD4 Missense_Mutation p.S27F 0.32 deleterious(0) possibly_damaging(0.855) TCGA-EE-A2A2-06 12 55615353 55615353 C T OR10A7 Missense_Mutation p.P182L 0.15 deleterious(0.03) benign(0.134) TCGA-EE-A2A2-06 12 56031459 56031459 C T OR10P1 Missense_Mutation p.R262W 0.19 deleterious(0.03) benign(0.192) TCGA-EE-A2A2-06 12 56398469 56398469 C T SUOX Silent p.P432P 0.20 TCGA-EE-A2A2-06 12 56492414 56492414 C T ERBB3 Intron 0.26 TCGA-EE-A2A2-06 12 56705059 56705059 G A CNPY2 Missense_Mutation p.S115F 0.24 deleterious(0.03) benign(0.167) TCGA-EE-A2A2-06 12 56755814 56755814 G A APOF Missense_Mutation p.S59F 0.43 tolerated(0.07) benign(0.176) TCGA-EE-A2A2-06 12 5708727 5708727 G A ANO2 Missense_Mutation p.S719L 0.47 tolerated(0.3) benign(0.157) TCGA-EE-A2A2-06 12 57548035 57548035 T G LRP1 Missense_Mutation p.F296V 0.21 possibly_damaging(0.882) TCGA-EE-A2A2-06 12 57600328 57600328 C T LRP1 Missense_Mutation p.S3888L 0.50 benign(0.075) TCGA-EE-A2A2-06 12 60098735 60098735 C A SLC16A7 Missense_Mutation p.F51L 0.44 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2A2-06 12 64521665 64521665 C T SRGAP1 Silent p.P855P 0.41 TCGA-EE-A2A2-06 12 6471223 6471223 T C SCNN1A Missense_Mutation p.N349S 0.51 tolerated(0.51) benign(0.009) TCGA-EE-A2A2-06 12 66308901 66308901 G A HMGA2 Intron 0.25 TCGA-EE-A2A2-06 12 6700684 6700684 G A CHD4 Silent p.I1096I 0.53 TCGA-EE-A2A2-06 12 6753378 6753378 C T ACRBP Missense_Mutation p.R290Q 0.46 tolerated(0.68) benign(0.019) TCGA-EE-A2A2-06 12 69651633 69651633 G T CPSF6 Silent p.G214G 0.50 TCGA-EE-A2A2-06 12 70954554 70954554 C T PTPRB Silent p.T1443T 0.31 TCGA-EE-A2A2-06 12 7527893 7527893 G A CD163L1 Silent p.V995V 0.25 TCGA-EE-A2A2-06 12 7528442 7528442 C T CD163L1 Missense_Mutation p.G847E 0.46 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A2A2-06 12 7528443 7528443 C T CD163L1 Missense_Mutation p.G847R 0.47 tolerated(0.08) probably_damaging(0.951) TCGA-EE-A2A2-06 12 75444548 75444548 G T KCNC2 Missense_Mutation p.P413T 0.56 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-EE-A2A2-06 12 7651770 7651770 C T CD163 Missense_Mutation p.E158K 0.22 tolerated(0.14) possibly_damaging(0.611) TCGA-EE-A2A2-06 12 76740252 76740252 G A BBS10 Missense_Mutation p.P505S 0.45 tolerated(0.3) benign(0.021) TCGA-EE-A2A2-06 12 78562597 78562597 C T NAV3 Silent p.A1644A 0.32 TCGA-EE-A2A2-06 12 81733043 81733043 G A PPFIA2 Missense_Mutation p.H822Y 0.29 deleterious(0.02) probably_damaging(0.945) TCGA-EE-A2A2-06 12 85518290 85518290 G A LRRIQ1 Missense_Mutation p.E1334K 0.43 tolerated(0.15) benign(0.025) TCGA-EE-A2A2-06 12 86373394 86373394 C T MGAT4C Silent p.G370G 0.28 TCGA-EE-A2A2-06 12 95914826 95914826 C T USP44 Missense_Mutation p.G629E 0.26 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 12 96368029 96368029 G A HAL Missense_Mutation p.P652L 0.24 tolerated_low_confidence(0.18) benign(0.011) TCGA-EE-A2A2-06 13 101944421 101944421 C T NALCN Missense_Mutation p.E323K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 13 102368069 102368069 G A ITGBL1 3'UTR 0.41 TCGA-EE-A2A2-06 13 103698526 103698526 G A SLC10A2 Missense_Mutation p.S335L 0.38 tolerated(0.08) benign(0.001) TCGA-EE-A2A2-06 13 109318403 109318403 C T MYO16 Silent p.F44F 0.29 TCGA-EE-A2A2-06 13 109518583 109518583 C T MYO16 Missense_Mutation p.S451F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 13 111154033 111154033 G A COL4A2 Missense_Mutation p.G1260E 0.36 probably_damaging(0.931) TCGA-EE-A2A2-06 13 113679023 113679023 C T MCF2L Missense_Mutation p.P77S 0.36 tolerated(0.06) probably_damaging(0.924) TCGA-EE-A2A2-06 13 24876758 24876758 C T SPATA13 Silent p.A1227A 0.35 TCGA-EE-A2A2-06 13 25285668 25285668 T A ATP12A 3'UTR 0.30 TCGA-EE-A2A2-06 13 25285670 25285670 C T ATP12A 3'UTR 0.30 TCGA-EE-A2A2-06 13 25338466 25338466 C T RNF17 Missense_Mutation p.S42L 0.40 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A2A2-06 13 25418068 25418068 G A RNF17 Silent p.K930K 0.22 TCGA-EE-A2A2-06 13 31506856 31506856 G A TEX26 Missense_Mutation p.E2K 0.34 deleterious_low_confidence(0.03) benign(0.022) TCGA-EE-A2A2-06 13 33635166 33635166 C T KL Silent p.L650L 0.29 TCGA-EE-A2A2-06 13 35770018 35770018 C T NBEA Missense_Mutation p.P1649S 0.36 tolerated_low_confidence(0.93) benign(0.001) TCGA-EE-A2A2-06 13 36239231 36239231 C T NBEA Missense_Mutation p.P2770L 0.38 deleterious(0.01) benign(0.115) TCGA-EE-A2A2-06 13 36241521 36241521 C T NBEA Silent p.C2804C 0.35 TCGA-EE-A2A2-06 13 36241522 36241522 C T NBEA Missense_Mutation p.L2805F 0.35 deleterious(0) probably_damaging(0.981) TCGA-EE-A2A2-06 13 36764133 36764133 C T SOHLH2 Silent p.E274E 0.35 TCGA-EE-A2A2-06 13 38211150 38211150 G A TRPC4 Missense_Mutation p.P947S 0.25 deleterious_low_confidence(0.03) benign(0.017) TCGA-EE-A2A2-06 13 39452977 39452977 C T FREM2 Nonsense_Mutation p.Q2957* 0.37 TCGA-EE-A2A2-06 13 41134072 41134072 G A FOXO1 Missense_Mutation p.P519L 0.45 tolerated(0.08) benign(0.36) TCGA-EE-A2A2-06 13 41654830 41654830 G A WBP4 Missense_Mutation p.E269K 0.36 tolerated(0.16) benign(0.063) TCGA-EE-A2A2-06 13 42769039 42769039 C T DGKH Missense_Mutation p.S685F 0.36 tolerated(0.21) possibly_damaging(0.602) TCGA-EE-A2A2-06 13 42769041 42769041 C T DGKH Missense_Mutation p.P686S 0.36 tolerated(0.13) benign(0.423) TCGA-EE-A2A2-06 13 45841479 45841479 A C GTF2F2 Missense_Mutation p.K200Q 0.34 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2A2-06 13 46276945 46276945 C T SPERT Silent p.T37T 0.39 TCGA-EE-A2A2-06 13 46708262 46708262 C T LCP1 Silent p.K542K 0.56 TCGA-EE-A2A2-06 13 50204832 50204832 C T ARL11 Silent p.I83I 0.35 TCGA-EE-A2A2-06 13 50296188 50296188 G A KPNA3 Missense_Mutation p.P210L 0.42 deleterious(0.04) benign(0.167) TCGA-EE-A2A2-06 13 52548574 52548574 A G ATP7B Missense_Mutation p.L261P 0.44 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 13 52586554 52586554 G A ALG11 5'UTR 0.33 TCGA-EE-A2A2-06 13 61986316 61986316 A G PCDH20 Missense_Mutation p.F639S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 13 72131210 72131210 C T DACH1 Missense_Mutation p.D508N 0.37 possibly_damaging(0.846) TCGA-EE-A2A2-06 13 76381890 76381890 G A LMO7 Missense_Mutation p.D258N 0.34 tolerated(0.09) benign(0.423) TCGA-EE-A2A2-06 13 76381957 76381957 A C LMO7 Missense_Mutation p.E280A 0.42 deleterious(0) possibly_damaging(0.766) TCGA-EE-A2A2-06 13 76423325 76423325 G T LMO7 Nonsense_Mutation p.E1188* 0.25 TCGA-EE-A2A2-06 13 77725060 77725060 A T MYCBP2 Missense_Mutation p.S2276T 0.23 possibly_damaging(0.791) TCGA-EE-A2A2-06 13 78133981 78133981 C T SCEL Silent p.S68S 0.26 TCGA-EE-A2A2-06 13 79911254 79911254 G T RBM26 Missense_Mutation p.L879I 0.32 deleterious(0.05) benign(0.303) TCGA-EE-A2A2-06 13 84454708 84454708 G A SLITRK1 Missense_Mutation p.P312L 0.35 tolerated(0.1) benign(0.01) TCGA-EE-A2A2-06 13 88328412 88328412 G A SLITRK5 Missense_Mutation p.A257T 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2A2-06 13 96589279 96589279 C T UGGT2 Missense_Mutation p.E626K 0.34 deleterious(0.02) benign(0.049) TCGA-EE-A2A2-06 13 97995409 97995409 C T MBNL2 Missense_Mutation p.P160L 0.34 deleterious(0.02) benign(0.18) TCGA-EE-A2A2-06 14 101194759 101194759 C T DLK1 Missense_Mutation p.P32S 0.35 tolerated(0.16) benign(0.33) TCGA-EE-A2A2-06 14 103946755 103946755 G C MARK3 Missense_Mutation p.R505P 0.27 deleterious(0) possibly_damaging(0.87) TCGA-EE-A2A2-06 14 104206788 104206788 G A PPP1R13B Silent p.A655A 0.34 TCGA-EE-A2A2-06 14 104208349 104208349 C T PPP1R13B Missense_Mutation p.G534R 0.34 tolerated(0.08) benign(0.323) TCGA-EE-A2A2-06 14 105406180 105406180 G A AHNAK2 Missense_Mutation p.S5203F 0.36 possibly_damaging(0.861) TCGA-EE-A2A2-06 14 105409727 105409727 G A AHNAK2 Missense_Mutation p.P4021S 0.31 benign(0.321) TCGA-EE-A2A2-06 14 105411657 105411657 C T AHNAK2 Silent p.P3377P 0.39 TCGA-EE-A2A2-06 14 105413138 105413138 C T AHNAK2 Missense_Mutation p.G2884S 0.37 possibly_damaging(0.893) TCGA-EE-A2A2-06 14 105455377 105455377 A T C14orf79 Missense_Mutation p.E174V 0.38 deleterious(0.03) benign(0.064) TCGA-EE-A2A2-06 14 106091118 106091118 G T IGHG4 Missense_Mutation p.Q227K 0.23 tolerated(0.14) benign(0.018) TCGA-EE-A2A2-06 14 106667825 106667825 G A IGHV3-20 Missense_Mutation p.S36F 0.40 deleterious_low_confidence(0.01) benign(0.331) TCGA-EE-A2A2-06 14 20216471 20216471 G A OR4Q3 Missense_Mutation p.M295I 0.17 tolerated(0.06) benign(0.048) TCGA-EE-A2A2-06 14 20248579 20248579 C T OR4M1 Missense_Mutation p.S33F 0.21 tolerated(0.52) benign(0.001) TCGA-EE-A2A2-06 14 20296159 20296159 C T OR4N2 Silent p.V184V 0.20 TCGA-EE-A2A2-06 14 20344984 20344984 G A OR4K2 Silent p.Q186Q 0.12 TCGA-EE-A2A2-06 14 20345023 20345023 G A OR4K2 Missense_Mutation p.M199I 0.13 tolerated(0.6) probably_damaging(0.998) TCGA-EE-A2A2-06 14 20389353 20389353 A T OR4K5 Missense_Mutation p.E196D 0.11 tolerated(0.09) benign(0.314) TCGA-EE-A2A2-06 14 20404475 20404475 C T OR4K1 Missense_Mutation p.S217F 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 14 20404482 20404482 C T OR4K1 Silent p.T219T 0.19 TCGA-EE-A2A2-06 14 20586009 20586009 C A OR4K17 Silent p.S148S 0.26 TCGA-EE-A2A2-06 14 21167603 21167603 C T RNASE4 Missense_Mutation p.P25S 0.37 deleterious(0.02) possibly_damaging(0.728) TCGA-EE-A2A2-06 14 21238388 21238388 G A EDDM3B Missense_Mutation p.E27K 0.42 deleterious(0.04) benign(0.003) TCGA-EE-A2A2-06 14 21424314 21424314 A C RNASE2 Silent p.T128T 0.37 TCGA-EE-A2A2-06 14 21830469 21830469 G A SUPT16H Silent p.S560S 0.31 TCGA-EE-A2A2-06 14 22102532 22102532 G A OR10G2 Missense_Mutation p.A156V 0.33 tolerated(0.24) benign(0.4) TCGA-EE-A2A2-06 14 22362656 22362656 C T TRAV8-4 5'UTR 0.63 TCGA-EE-A2A2-06 14 23818588 23818588 G A SLC22A17 Missense_Mutation p.P140L 0.36 tolerated(1) possibly_damaging(0.867) TCGA-EE-A2A2-06 14 23887503 23887503 G A MYH7 Missense_Mutation p.S1362F 0.41 deleterious(0) probably_damaging(0.948) TCGA-EE-A2A2-06 14 24033353 24033353 T C AP1G2 Silent p.T331T 0.41 TCGA-EE-A2A2-06 14 24114504 24114504 G A DHRS2 Missense_Mutation p.G299E 0.38 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A2-06 14 24587637 24587637 C T DCAF11 Silent p.F206F 0.36 TCGA-EE-A2A2-06 14 24803709 24803709 G A ADCY4 Silent p.A50A 0.34 TCGA-EE-A2A2-06 14 25043610 25043610 G A CTSG Silent p.A145A 0.31 TCGA-EE-A2A2-06 14 37145711 37145711 C T PAX9 3'UTR 0.31 TCGA-EE-A2A2-06 14 38724051 38724051 C T CLEC14A Missense_Mutation p.D393N 0.42 tolerated(0.19) benign(0.058) TCGA-EE-A2A2-06 14 45599954 45599954 G A FKBP3 Missense_Mutation p.T53I 0.33 deleterious(0) possibly_damaging(0.71) TCGA-EE-A2A2-06 14 50360931 50360931 G A ARF6 Silent p.G159G 0.36 TCGA-EE-A2A2-06 14 55847310 55847310 G A ATG14 Missense_Mutation p.P326S 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 14 56108471 56108471 C T KTN1 Missense_Mutation p.S722F 0.34 deleterious(0.02) benign(0.085) TCGA-EE-A2A2-06 14 57082683 57082683 G A TMEM260 Silent p.R293R 0.32 TCGA-EE-A2A2-06 14 60921820 60921820 C T C14orf39 Missense_Mutation p.E468K 0.27 tolerated(0.3) possibly_damaging(0.801) TCGA-EE-A2A2-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.30 TCGA-EE-A2A2-06 14 64724039 64724039 C T ESR2 Silent p.E332E 0.39 TCGA-EE-A2A2-06 14 64724074 64724074 C T ESR2 Missense_Mutation p.E321K 0.32 deleterious(0.01) benign(0.211) TCGA-EE-A2A2-06 14 65241964 65241964 G A SPTB Missense_Mutation p.A1574V 0.33 tolerated(0.12) benign(0.008) TCGA-EE-A2A2-06 14 65262071 65262071 C T SPTB Nonsense_Mutation p.W543* 0.39 TCGA-EE-A2A2-06 14 66209165 66209165 C T FUT8 3'UTR 0.40 TCGA-EE-A2A2-06 14 68191301 68191301 T C RDH12 Silent p.A60A 0.35 TCGA-EE-A2A2-06 14 71134364 71134364 T C TTC9 Missense_Mutation p.F164L 0.36 tolerated(0.07) probably_damaging(0.967) TCGA-EE-A2A2-06 14 75151289 75151289 G A AREL1 Silent p.D37D 0.43 TCGA-EE-A2A2-06 14 75279405 75279405 C T YLPM1 Missense_Mutation p.P1808S 0.19 benign(0.069) TCGA-EE-A2A2-06 14 76905876 76905876 C T ESRRB Silent p.P60P 0.39 TCGA-EE-A2A2-06 14 81227856 81227856 G A CEP128 Silent p.S826S 0.35 TCGA-EE-A2A2-06 14 90650963 90650963 C T KCNK13 Silent p.I281I 0.37 TCGA-EE-A2A2-06 14 91927794 91927794 G T SMEK1 Silent p.S761S 0.40 TCGA-EE-A2A2-06 14 92258712 92258712 G A TC2N Missense_Mutation p.S349F 0.32 deleterious(0.02) possibly_damaging(0.75) TCGA-EE-A2A2-06 14 93183739 93183739 C T LGMN Missense_Mutation p.D102N 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2A2-06 14 94044276 94044276 C T UNC79 Missense_Mutation p.P590L 0.36 deleterious(0) benign(0.387) TCGA-EE-A2A2-06 14 94582776 94582776 C A IFI27 Intron 0.42 TCGA-EE-A2A2-06 14 94964483 94964483 G A SERPINA12 Silent p.S84S 0.35 TCGA-EE-A2A2-06 15 100269448 100269448 G A LYSMD4 Silent p.I258I 0.38 TCGA-EE-A2A2-06 15 101929707 101929707 G A PCSK6 Silent p.P423P 0.34 TCGA-EE-A2A2-06 15 102516407 102516407 C T WASH3P 3'Flank 0.08 TCGA-EE-A2A2-06 15 23890670 23890670 C T MAGEL2 Silent p.K137K 0.47 TCGA-EE-A2A2-06 15 25232075 25232075 T A SNORD108 RNA 0.36 TCGA-EE-A2A2-06 15 25332813 25332813 C G SNORD116-20 RNA 0.35 TCGA-EE-A2A2-06 15 31220836 31220836 G A FAN1 Missense_Mutation p.D857N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 15 31357274 31357274 T C TRPM1 Intron 0.35 TCGA-EE-A2A2-06 15 32693645 32693645 C T GOLGA8K Missense_Mutation p.R27K 0.49 deleterious(0.01) benign(0.253) TCGA-EE-A2A2-06 15 32929997 32929997 C T ARHGAP11A Missense_Mutation p.P1008L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 15 33895497 33895497 G A RYR3 Missense_Mutation p.G699E 0.35 probably_damaging(1) TCGA-EE-A2A2-06 15 34657849 34657849 G A LPCAT4 Silent p.I56I 0.44 TCGA-EE-A2A2-06 15 35176813 35176813 G A AQR Silent p.P980P 0.38 TCGA-EE-A2A2-06 15 40247835 40247835 T C EIF2AK4 Silent p.I203I 0.28 TCGA-EE-A2A2-06 15 40675112 40675112 C T KNSTRN Missense_Mutation p.P26S 0.41 tolerated_low_confidence(0.15) benign(0.037) TCGA-EE-A2A2-06 15 41195020 41195020 C T VPS18 Silent p.F801F 0.41 TCGA-EE-A2A2-06 15 41772832 41772832 C T RTF1 Missense_Mutation p.P694S 0.34 tolerated(0.08) probably_damaging(0.976) TCGA-EE-A2A2-06 15 41772833 41772833 C T RTF1 Missense_Mutation p.P694L 0.33 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 15 42170735 42170735 G A SPTBN5 Missense_Mutation p.A1092V 0.39 benign(0.27) TCGA-EE-A2A2-06 15 42436718 42436718 G A PLA2G4F Silent p.S635S 0.39 TCGA-EE-A2A2-06 15 43552311 43552311 C T TGM5 Silent p.Q125Q 0.40 TCGA-EE-A2A2-06 15 44705593 44705593 G A CASC4 Missense_Mutation p.D434N 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A2-06 15 44918538 44918538 C T SPG11 Silent p.L745L 0.41 TCGA-EE-A2A2-06 15 45398743 45398743 G A DUOX2 Missense_Mutation p.A643V 0.31 tolerated(0.31) benign(0.002) TCGA-EE-A2A2-06 15 45781175 45781175 G A SLC30A4 Missense_Mutation p.S253F 0.29 deleterious(0.01) possibly_damaging(0.793) TCGA-EE-A2A2-06 15 48707889 48707889 A G FBN1 Missense_Mutation p.M2632T 0.38 benign(0.026) TCGA-EE-A2A2-06 15 48789529 48789529 G A FBN1 Missense_Mutation p.R743C 0.49 possibly_damaging(0.88) TCGA-EE-A2A2-06 15 50555448 50555448 C T HDC Missense_Mutation p.R63Q 0.39 tolerated(0.13) benign(0.015) TCGA-EE-A2A2-06 15 51250972 51250972 G A AP4E1 Missense_Mutation p.R611K 0.29 tolerated(0.41) benign(0) TCGA-EE-A2A2-06 15 51250973 51250973 G T AP4E1 Missense_Mutation p.R611S 0.29 tolerated(0.27) benign(0) TCGA-EE-A2A2-06 15 52356190 52356190 G A MAPK6 Missense_Mutation p.D387N 0.39 deleterious(0.03) possibly_damaging(0.766) TCGA-EE-A2A2-06 15 54306845 54306845 C T UNC13C Missense_Mutation p.S582L 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2A2-06 15 54841857 54841857 G A UNC13C Missense_Mutation p.A1949T 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-EE-A2A2-06 15 56032592 56032592 G A PRTG Missense_Mutation p.L129F 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A2-06 15 56386375 56386375 G A RFX7 Missense_Mutation p.P1184L 0.36 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-EE-A2A2-06 15 58467154 58467154 C T AQP9 Silent p.I138I 0.34 TCGA-EE-A2A2-06 15 60768358 60768358 G A NARG2 Missense_Mutation p.S17F 0.43 deleterious(0.01) possibly_damaging(0.8) TCGA-EE-A2A2-06 15 63618455 63618455 C T CA12 3'UTR 0.41 TCGA-EE-A2A2-06 15 63908060 63908060 G A HERC1 Silent p.I4667I 0.37 TCGA-EE-A2A2-06 15 64015516 64015516 C T HERC1 Missense_Mutation p.G1203R 0.35 possibly_damaging(0.461) TCGA-EE-A2A2-06 15 69011130 69011130 C T CORO2B Missense_Mutation p.S354F 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A2A2-06 15 69238433 69238433 G A SPESP1 Missense_Mutation p.S187N 0.39 tolerated(0.29) benign(0.063) TCGA-EE-A2A2-06 15 72192297 72192297 C G MYO9A Silent p.V1067V 0.07 TCGA-EE-A2A2-06 15 72700271 72700271 G A TMEM202 3'UTR 0.30 TCGA-EE-A2A2-06 15 72954876 72954876 G A GOLGA6B Silent p.Q377Q 0.22 TCGA-EE-A2A2-06 15 73044794 73044794 G A ADPGK Missense_Mutation p.S460F 0.34 deleterious(0.03) benign(0.373) TCGA-EE-A2A2-06 15 75012934 75012934 C T CYP1A1 Missense_Mutation p.E479K 0.34 tolerated(0.34) benign(0.225) TCGA-EE-A2A2-06 15 75188745 75188745 G A MPI Intron 0.37 TCGA-EE-A2A2-06 15 75722576 75722576 G A SIN3A Silent p.T47T 0.44 TCGA-EE-A2A2-06 15 78317818 78317818 G A TBC1D2B Missense_Mutation p.P290L 0.43 deleterious(0.01) benign(0.075) TCGA-EE-A2A2-06 15 79350699 79350699 C T RASGRF1 Missense_Mutation p.E170K 0.45 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2A2-06 15 81271499 81271499 G A MESDC2 3'UTR 0.38 TCGA-EE-A2A2-06 15 82456262 82456262 G A EFTUD1 Missense_Mutation p.P605L 0.34 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2A2-06 15 83349745 83349745 G A AP3B2 Silent p.A205A 0.27 TCGA-EE-A2A2-06 15 83349746 83349746 G A AP3B2 Missense_Mutation p.A205V 0.27 deleterious(0.02) possibly_damaging(0.842) TCGA-EE-A2A2-06 15 83876084 83876084 C A HDGFRP3 Missense_Mutation p.R28L 0.43 deleterious(0.01) benign(0.029) TCGA-EE-A2A2-06 15 84245413 84245413 G A SH3GL3 Missense_Mutation p.E182K 0.42 deleterious(0.03) possibly_damaging(0.491) TCGA-EE-A2A2-06 15 84553918 84553918 G A ADAMTSL3 Silent p.Q342Q 0.22 TCGA-EE-A2A2-06 15 84561641 84561641 G A ADAMTSL3 Splice_Site p.X489_splice 0.29 TCGA-EE-A2A2-06 15 85382953 85382953 C T ALPK3 Missense_Mutation p.A350V 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 15 89381943 89381943 G A ACAN Silent p.R40R 0.35 TCGA-EE-A2A2-06 15 89381944 89381944 G A ACAN Missense_Mutation p.V41I 0.35 deleterious(0) unknown(0) TCGA-EE-A2A2-06 15 89403630 89403630 C T ACAN Silent p.C2302C 0.36 TCGA-EE-A2A2-06 15 90771879 90771879 C T SEMA4B 3'UTR 0.37 TCGA-EE-A2A2-06 15 93543792 93543792 C T CHD2 Silent p.P1353P 0.35 TCGA-EE-A2A2-06 16 10867218 10867218 C T TVP23A Nonsense_Mutation p.W135* 0.39 TCGA-EE-A2A2-06 16 11001684 11001684 G A CIITA Missense_Mutation p.A779T 0.38 tolerated(0.47) benign(0.001) TCGA-EE-A2A2-06 16 1270244 1270244 C T CACNA1H Silent p.I2104I 0.37 TCGA-EE-A2A2-06 16 15815413 15815413 C T MYH11 Missense_Mutation p.E1489K 0.36 probably_damaging(0.998) TCGA-EE-A2A2-06 16 15870018 15870018 G A MYH11 Missense_Mutation p.S276L 0.33 probably_damaging(0.999) TCGA-EE-A2A2-06 16 15880532 15880532 G A MYH11 Silent p.A196A 0.36 TCGA-EE-A2A2-06 16 16282690 16282690 G A ABCC6 Nonsense_Mutation p.Q593* 0.28 TCGA-EE-A2A2-06 16 16330755 16330755 C T NOMO3 Intron 0.40 TCGA-EE-A2A2-06 16 17353103 17353103 G A XYLT1 Missense_Mutation p.P219S 0.31 tolerated_low_confidence(0.5) benign(0.003) TCGA-EE-A2A2-06 16 1838655 1838655 C T NUBP2 Silent p.F252F 0.44 TCGA-EE-A2A2-06 16 18554963 18554963 G A NOMO2 Silent p.L237L 0.35 TCGA-EE-A2A2-06 16 19083404 19083404 G A COQ7 Silent p.R76R 0.37 TCGA-EE-A2A2-06 16 2012222 2012222 G A RPS2 Silent p.P253P 0.36 TCGA-EE-A2A2-06 16 20422920 20422920 C T ACSM5 Silent p.T38T 0.39 TCGA-EE-A2A2-06 16 20986677 20986677 C T DNAH3 Missense_Mutation p.E2713K 0.39 tolerated(0.08) benign(0.394) TCGA-EE-A2A2-06 16 21042367 21042367 C A DNAH3 Missense_Mutation p.K1813N 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 16 2228577 2228577 C G CASKIN1 Missense_Mutation p.D1424H 0.42 unknown(0) TCGA-EE-A2A2-06 16 2231004 2231004 G A CASKIN1 Nonsense_Mutation p.Q789* 0.33 TCGA-EE-A2A2-06 16 2234978 2234978 G A CASKIN1 Missense_Mutation p.P433L 0.40 benign(0.001) TCGA-EE-A2A2-06 16 2260031 2260031 C T BRICD5 Missense_Mutation p.E120K 0.39 tolerated(0.55) benign(0.108) TCGA-EE-A2A2-06 16 2294496 2294496 G A ECI1 Missense_Mutation p.P118S 0.35 tolerated(0.08) benign(0.173) TCGA-EE-A2A2-06 16 2294497 2294497 G A ECI1 Silent p.S117S 0.35 TCGA-EE-A2A2-06 16 23079694 23079695 AA - USP31 Frame_Shift_Del p.L1244Rfs*8 0.30 TCGA-EE-A2A2-06 16 23391948 23391948 G A SCNN1B Silent p.E583E 0.36 TCGA-EE-A2A2-06 16 23713965 23713965 G A ERN2 Missense_Mutation p.H353Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 16 24104192 24104192 C T PRKCB Missense_Mutation p.P204S 0.38 tolerated(0.13) benign(0.16) TCGA-EE-A2A2-06 16 24196444 24196444 C T PRKCB Nonsense_Mutation p.Q516* 0.30 TCGA-EE-A2A2-06 16 24582320 24582320 C T RBBP6 Silent p.I1311I 0.34 TCGA-EE-A2A2-06 16 24831623 24831623 T A TNRC6A Missense_Mutation p.D1748E 0.34 tolerated(0.08) benign(0.078) TCGA-EE-A2A2-06 16 24831624 24831624 A C TNRC6A Missense_Mutation p.N1749H 0.34 deleterious(0) possibly_damaging(0.784) TCGA-EE-A2A2-06 16 2499286 2499286 C T CCNF Missense_Mutation p.P408S 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2A2-06 16 25263266 25263266 A T ZKSCAN2 Missense_Mutation p.F257I 0.38 tolerated(0.52) benign(0) TCGA-EE-A2A2-06 16 28146597 28146597 G A XPO6 Silent p.I461I 0.49 TCGA-EE-A2A2-06 16 28403325 28403325 G A EIF3CL Silent p.V305V 0.36 TCGA-EE-A2A2-06 16 28734620 28734620 C T EIF3C Silent p.V304V 0.24 TCGA-EE-A2A2-06 16 29708641 29708641 C T QPRT Missense_Mutation p.S268F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 16 29841948 29841948 C T MVP Silent p.S26S 0.36 TCGA-EE-A2A2-06 16 29885032 29885032 G A SEZ6L2 Missense_Mutation p.P708L 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2A2-06 16 30018571 30018571 C T DOC2A Missense_Mutation p.E193K 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2A2-06 16 30128045 30128045 C T MAPK3 Missense_Mutation p.E362K 0.44 tolerated(0.21) benign(0.006) TCGA-EE-A2A2-06 16 30495178 30495178 C T ITGAL Silent p.A251A 0.43 TCGA-EE-A2A2-06 16 30749203 30749203 C T SRCAP Silent p.G2614G 0.38 TCGA-EE-A2A2-06 16 3254585 3254585 C T OR1F1 Silent p.F113F 0.34 TCGA-EE-A2A2-06 16 3306609 3306609 G A MEFV 5'UTR 0.38 TCGA-EE-A2A2-06 16 3454643 3454643 G A ZNF174 Missense_Mutation p.G207E 0.38 tolerated(0.5) benign(0.002) TCGA-EE-A2A2-06 16 347065 347065 G A AXIN1 Missense_Mutation p.T649I 0.38 tolerated(0.12) benign(0.128) TCGA-EE-A2A2-06 16 34712344 34712344 G A RP11-80F22.9 RNA 0.22 TCGA-EE-A2A2-06 16 3586094 3586094 C T CLUAP1 Intron 0.31 TCGA-EE-A2A2-06 16 3640521 3640521 G A SLX4 Missense_Mutation p.P1040S 0.43 tolerated(0.42) benign(0.045) TCGA-EE-A2A2-06 16 50112882 50112882 C A HEATR3 Missense_Mutation p.H332N 0.33 tolerated(0.5) benign(0.013) TCGA-EE-A2A2-06 16 50733554 50733554 C T NOD2 Silent p.L77L 0.35 TCGA-EE-A2A2-06 16 50765666 50765666 G A NOD2 Missense_Mutation p.G1020E 0.33 deleterious(0) probably_damaging(0.98) TCGA-EE-A2A2-06 16 5094240 5094240 C G C16orf89 3'UTR 0.34 TCGA-EE-A2A2-06 16 57702286 57702286 C T GPR97 Silent p.A9A 0.40 TCGA-EE-A2A2-06 16 57702287 57702287 C T GPR97 Silent p.L10L 0.39 TCGA-EE-A2A2-06 16 61851630 61851630 C T CDH8 Missense_Mutation p.D344N 0.34 tolerated(0.16) benign(0.022) TCGA-EE-A2A2-06 16 66948284 66948284 C T CDH16 Silent p.R205R 0.33 TCGA-EE-A2A2-06 16 66969505 66969505 C T CES2 Silent p.V53V 0.38 TCGA-EE-A2A2-06 16 67288959 67288959 C T SLC9A5 Silent p.L176L 0.37 TCGA-EE-A2A2-06 16 67699046 67699046 C T ENKD1 Silent p.K102K 0.34 TCGA-EE-A2A2-06 16 70292955 70292955 G A AARS Silent p.A640A 0.36 TCGA-EE-A2A2-06 16 70292956 70292956 G A AARS Missense_Mutation p.A640V 0.36 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2A2-06 16 70543248 70543248 G A COG4 Silent p.T296T 0.43 TCGA-EE-A2A2-06 16 70955078 70955078 C T HYDIN Missense_Mutation p.E2401K 0.29 probably_damaging(0.956) TCGA-EE-A2A2-06 16 71772996 71772996 G A AP1G1 Missense_Mutation p.S709F 0.37 deleterious(0.02) possibly_damaging(0.75) TCGA-EE-A2A2-06 16 72993478 72993478 G A ZFHX3 Silent p.P189P 0.38 TCGA-EE-A2A2-06 16 74330842 74330842 G C PSMD7 Silent p.V10V 0.36 TCGA-EE-A2A2-06 16 75146190 75146190 G A LDHD 3'UTR 0.40 TCGA-EE-A2A2-06 16 75512732 75512732 G A CHST6 Missense_Mutation p.A332V 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 16 76461449 76461449 C T CNTNAP4 Missense_Mutation p.P139L 0.41 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A2A2-06 16 76486463 76486463 C T CNTNAP4 Missense_Mutation p.S304F 0.39 deleterious(0) possibly_damaging(0.522) TCGA-EE-A2A2-06 16 80583408 80583408 A G DYNLRB2 Missense_Mutation p.N36S 0.38 tolerated(0.11) benign(0.146) TCGA-EE-A2A2-06 16 81181055 81181055 C T PKD1L2 RNA 0.36 TCGA-EE-A2A2-06 16 84209740 84209740 G A DNAAF1 Missense_Mutation p.E634K 0.45 tolerated(0.05) benign(0.077) TCGA-EE-A2A2-06 16 84444322 84444322 G A ATP2C2 Missense_Mutation p.E156K 0.38 deleterious(0.01) benign(0.12) TCGA-EE-A2A2-06 16 84474529 84474529 G A ATP2C2 Missense_Mutation p.E426K 0.30 tolerated(0.62) benign(0.012) TCGA-EE-A2A2-06 16 85690882 85690882 G A GSE1 Splice_Site p.X438_splice 0.34 TCGA-EE-A2A2-06 16 89763814 89763814 G A SPATA2L Silent p.A401A 0.39 TCGA-EE-A2A2-06 16 9857458 9857458 C T GRIN2A Missense_Mutation p.D1315N 0.29 deleterious(0) possibly_damaging(0.805) TCGA-EE-A2A2-06 17 10318681 10318681 G A MYH8 Silent p.I223I 0.65 TCGA-EE-A2A2-06 17 10405001 10405001 C T MYH1 Silent p.K1086K 0.68 TCGA-EE-A2A2-06 17 10531915 10531915 G A MYH3 3'UTR 0.52 TCGA-EE-A2A2-06 17 11573027 11573027 G A DNAH9 Missense_Mutation p.R1090Q 0.51 benign(0.025) TCGA-EE-A2A2-06 17 12639528 12639528 G A MYOCD Missense_Mutation p.D156N 0.50 deleterious(0.01) possibly_damaging(0.517) TCGA-EE-A2A2-06 17 12661487 12661487 C T MYOCD Missense_Mutation p.S763L 0.60 deleterious(0.04) benign(0.005) TCGA-EE-A2A2-06 17 1563247 1563247 C T PRPF8 Missense_Mutation p.E1612K 0.59 deleterious(0) possibly_damaging(0.881) TCGA-EE-A2A2-06 17 2266792 2266792 G A SGSM2 Missense_Mutation p.E236K 0.63 deleterious(0.05) benign(0.433) TCGA-EE-A2A2-06 17 25924425 25924425 C T KSR1 Silent p.P340P 0.34 TCGA-EE-A2A2-06 17 2601309 2601309 G A CLUH Silent p.F576F 0.57 TCGA-EE-A2A2-06 17 26817382 26817382 G A SLC13A2 Missense_Mutation p.G97R 0.40 tolerated_low_confidence(0.12) benign(0.18) TCGA-EE-A2A2-06 17 27002448 27002448 G A SUPT6H Missense_Mutation p.G190R 0.38 deleterious(0.03) unknown(0) TCGA-EE-A2A2-06 17 27306818 27306818 C T SEZ6 Nonsense_Mutation p.W246* 0.44 TCGA-EE-A2A2-06 17 27975269 27975269 C T SSH2 Nonsense_Mutation p.W413* 0.33 TCGA-EE-A2A2-06 17 28537579 28537579 G A SLC6A4 Missense_Mutation p.A468V 0.43 tolerated(0.76) benign(0.008) TCGA-EE-A2A2-06 17 28548879 28548879 G A SLC6A4 Missense_Mutation p.T33I 0.40 tolerated(0.16) benign(0.016) TCGA-EE-A2A2-06 17 29685550 29685550 C T NF1 Missense_Mutation p.P2675S 0.26 tolerated(0.85) benign(0.002) TCGA-EE-A2A2-06 17 34067441 34067441 C A RASL10B Missense_Mutation p.T77N 0.36 tolerated(0.31) benign(0.005) TCGA-EE-A2A2-06 17 34072434 34072434 C T GAS2L2 Silent p.G694G 0.37 TCGA-EE-A2A2-06 17 34183756 34183756 C T C17orf66 Silent p.T402T 0.33 TCGA-EE-A2A2-06 17 34310778 34310778 G A CCL14 3'UTR 0.41 TCGA-EE-A2A2-06 17 35563735 35563735 G A ACACA Missense_Mutation p.P1304S 0.42 tolerated(1) possibly_damaging(0.902) TCGA-EE-A2A2-06 17 36003412 36003412 C T DDX52 Missense_Mutation p.G13E 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 17 36876005 36876005 C T MLLT6 Missense_Mutation p.S671F 0.37 deleterious(0) unknown(0) TCGA-EE-A2A2-06 17 37618287 37618287 G A CDK12 5'Flank 0.41 TCGA-EE-A2A2-06 17 38024514 38024514 C T ZPBP2 5'UTR 0.39 TCGA-EE-A2A2-06 17 38325687 38325687 C T CASC3 Silent p.P692P 0.43 TCGA-EE-A2A2-06 17 38350012 38350012 C T RAPGEFL1 Missense_Mutation p.S448F 0.38 deleterious(0) probably_damaging(0.972) TCGA-EE-A2A2-06 17 38636963 38636963 T G TNS4 Missense_Mutation p.K577T 0.33 deleterious(0.02) possibly_damaging(0.838) TCGA-EE-A2A2-06 17 39164949 39164949 A G KRTAP3-1 3'UTR 0.39 TCGA-EE-A2A2-06 17 39340692 39340692 G A KRTAP4-1 Missense_Mutation p.P139S 0.36 tolerated(0.06) unknown(0) TCGA-EE-A2A2-06 17 39671830 39671830 C T KRT15 Missense_Mutation p.E381K 0.39 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A2A2-06 17 40842928 40842928 C T CNTNAP1 Missense_Mutation p.S676F 0.35 tolerated(0.68) possibly_damaging(0.775) TCGA-EE-A2A2-06 17 40962998 40962998 A G BECN1 Intron 0.47 TCGA-EE-A2A2-06 17 41063225 41063225 G A G6PC Missense_Mutation p.G286R 0.37 tolerated(0.09) benign(0.03) TCGA-EE-A2A2-06 17 41132593 41132593 G A RUNDC1 5'UTR 0.33 TCGA-EE-A2A2-06 17 41955296 41955296 C T MPP2 Missense_Mutation p.G513E 0.34 tolerated(0.82) probably_damaging(0.941) TCGA-EE-A2A2-06 17 41955297 41955297 C T MPP2 Missense_Mutation p.G513R 0.34 tolerated(0.18) probably_damaging(0.971) TCGA-EE-A2A2-06 17 43924320 43924320 C T SPPL2C Missense_Mutation p.P683L 0.34 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-EE-A2A2-06 17 45517911 45517911 G A EFCAB13 Missense_Mutation p.R918K 0.37 tolerated_low_confidence(0.82) benign(0.017) TCGA-EE-A2A2-06 17 45822864 45822864 G A TBX21 3'UTR 0.37 TCGA-EE-A2A2-06 17 46135824 46135824 C T NFE2L1 Silent p.P380P 0.39 TCGA-EE-A2A2-06 17 4621956 4621956 T A ARRB2 Nonsense_Mutation p.C273* 0.69 TCGA-EE-A2A2-06 17 4621957 4621957 C T ARRB2 Missense_Mutation p.P274S 0.70 tolerated(0.34) probably_damaging(0.997) TCGA-EE-A2A2-06 17 46673891 46673891 C A HOXB6 Nonsense_Mutation p.E187* 0.35 TCGA-EE-A2A2-06 17 46673892 46673892 C T HOXB6 Silent p.T186T 0.35 TCGA-EE-A2A2-06 17 4883016 4883016 G A CAMTA2 Missense_Mutation p.T557I 0.61 tolerated(0.08) benign(0.005) TCGA-EE-A2A2-06 17 49231712 49231712 G A NME1 5'UTR 0.37 TCGA-EE-A2A2-06 17 49708759 49708759 A G CA10 3'UTR 0.12 TCGA-EE-A2A2-06 17 51902363 51902363 A G KIF2B Missense_Mutation p.K657E 0.35 tolerated(0.61) benign(0.08) TCGA-EE-A2A2-06 17 53798339 53798339 G A TMEM100 Silent p.I31I 0.27 TCGA-EE-A2A2-06 17 56232598 56232598 C T OR4D1 Silent p.F28F 0.38 TCGA-EE-A2A2-06 17 56386214 56386214 G A BZRAP1 Silent p.S1473S 0.45 TCGA-EE-A2A2-06 17 56646619 56646619 C T TEX14 Missense_Mutation p.E1320K 0.39 tolerated(0.07) possibly_damaging(0.489) TCGA-EE-A2A2-06 17 56833305 56833305 C T PPM1E 5'UTR 0.41 TCGA-EE-A2A2-06 17 58022834 58022834 T C RP11-178C3.1 Missense_Mutation p.I35T 0.46 tolerated(0.55) benign(0.001) TCGA-EE-A2A2-06 17 59485551 59485551 G A TBX2 Missense_Mutation p.R608Q 0.40 deleterious(0) probably_damaging(0.953) TCGA-EE-A2A2-06 17 59958411 59958411 C T INTS2 Silent p.L745L 0.40 TCGA-EE-A2A2-06 17 61428720 61428720 G A TANC2 Missense_Mutation p.M565I 0.39 tolerated(0.59) benign(0) TCGA-EE-A2A2-06 17 61619602 61619602 G A KCNH6 Missense_Mutation p.G652E 0.33 deleterious(0.05) possibly_damaging(0.724) TCGA-EE-A2A2-06 17 61902519 61902519 G A FTSJ3 Silent p.F200F 0.37 TCGA-EE-A2A2-06 17 61914857 61914857 G A SMARCD2 Silent p.F115F 0.36 TCGA-EE-A2A2-06 17 62131659 62131659 C T ERN1 Missense_Mutation p.R635Q 0.33 tolerated(0.14) benign(0.05) TCGA-EE-A2A2-06 17 62144126 62144126 G A ERN1 Silent p.T249T 0.30 TCGA-EE-A2A2-06 17 62801204 62801204 C T PLEKHM1P RNA 0.34 TCGA-EE-A2A2-06 17 62801205 62801205 C T PLEKHM1P RNA 0.35 TCGA-EE-A2A2-06 17 62856307 62856307 G A LRRC37A3 Silent p.P1319P 0.35 TCGA-EE-A2A2-06 17 63822421 63822421 C T CEP112 Intron 0.38 TCGA-EE-A2A2-06 17 64880637 64880637 C T CACNG5 Silent p.L143L 0.39 TCGA-EE-A2A2-06 17 649222 649222 G A GEMIN4 Silent p.Y687Y 0.69 TCGA-EE-A2A2-06 17 65021002 65021002 C G CACNG4 Missense_Mutation p.P111A 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2A2-06 17 65041002 65041002 G A CACNG1 Missense_Mutation p.G76R 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A2-06 17 65041003 65041003 G A CACNG1 Missense_Mutation p.G76E 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A2-06 17 65908943 65908943 C T BPTF Missense_Mutation p.S1648F 0.32 probably_damaging(0.999) TCGA-EE-A2A2-06 17 6683895 6683895 C T FBXO39 Silent p.I236I 0.67 TCGA-EE-A2A2-06 17 66972067 66972067 C T ABCA9 Missense_Mutation p.E1622K 0.30 deleterious(0) possibly_damaging(0.721) TCGA-EE-A2A2-06 17 71395335 71395335 G A SDK2 Missense_Mutation p.S1022F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 17 72584797 72584797 G A CD300LD Nonsense_Mutation p.R78* 0.34 TCGA-EE-A2A2-06 17 72998256 72998256 G A CDR2L Missense_Mutation p.E147K 0.41 deleterious(0.02) possibly_damaging(0.661) TCGA-EE-A2A2-06 17 73559867 73559867 C T LLGL2 Silent p.L287L 0.37 TCGA-EE-A2A2-06 17 73723294 73723294 C T ITGB4 Silent p.A33A 0.28 TCGA-EE-A2A2-06 17 73836021 73836021 C T UNC13D Silent p.A318A 0.39 TCGA-EE-A2A2-06 17 73838692 73838692 A G UNC13D Missense_Mutation p.F131L 0.37 tolerated(0.14) benign(0.047) TCGA-EE-A2A2-06 17 74079617 74079617 G A EXOC7 3'UTR 0.37 TCGA-EE-A2A2-06 17 75471799 75471799 C T SEPT9 Intron 0.40 TCGA-EE-A2A2-06 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.65 TCGA-EE-A2A2-06 17 76464942 76464942 T A DNAH17 Silent p.I2831I 0.41 TCGA-EE-A2A2-06 17 76499039 76499039 C T DNAH17 Missense_Mutation p.E1667K 0.41 benign(0.034) TCGA-EE-A2A2-06 17 76522770 76522770 G A DNAH17 Missense_Mutation p.S1225F 0.28 benign(0.003) TCGA-EE-A2A2-06 17 77770084 77770084 G A CBX8 Silent p.I48I 0.37 TCGA-EE-A2A2-06 17 78058622 78058622 A C CCDC40 Silent p.A690A 0.35 TCGA-EE-A2A2-06 17 78184301 78184301 G - SGSH Frame_Shift_Del p.L487Wfs*104 0.30 TCGA-EE-A2A2-06 17 7910458 7910458 G A GUCY2D Missense_Mutation p.V487M 0.62 tolerated(0.05) benign(0.013) TCGA-EE-A2A2-06 17 80053275 80053275 G A FASN Silent p.V67V 0.39 TCGA-EE-A2A2-06 17 80350239 80350239 G A OGFOD3 3'UTR 0.44 TCGA-EE-A2A2-06 17 8049307 8049307 G A PER1 Silent p.V729V 0.61 TCGA-EE-A2A2-06 17 8272565 8272565 C T KRBA2 Missense_Mutation p.E456K 0.66 tolerated(0.08) probably_damaging(0.983) TCGA-EE-A2A2-06 18 13049187 13049187 C T CEP192 Silent p.N799N 0.41 TCGA-EE-A2A2-06 18 14478185 14478185 C T CXADRP3 RNA 0.42 TCGA-EE-A2A2-06 18 21099071 21099071 A T C18orf8 Missense_Mutation p.N261I 0.37 deleterious(0.01) benign(0.282) TCGA-EE-A2A2-06 18 23862009 23862009 G A TAF4B Silent p.L319L 0.35 TCGA-EE-A2A2-06 18 2718181 2718181 T C SMCHD1 Silent p.I762I 0.45 TCGA-EE-A2A2-06 18 28605778 28605778 C T DSC3 Missense_Mutation p.G193E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 18 28659912 28659912 C T DSC2 Missense_Mutation p.E522K 0.29 deleterious(0.01) benign(0.327) TCGA-EE-A2A2-06 18 28666641 28666641 C T DSC2 Silent p.L280L 0.37 TCGA-EE-A2A2-06 18 28711788 28711788 G A DSC1 Silent p.L752L 0.37 TCGA-EE-A2A2-06 18 2891764 2891764 C T EMILIN2 Nonsense_Mutation p.Q547* 0.35 TCGA-EE-A2A2-06 18 28989502 28989502 G A DSG4 Missense_Mutation p.G674E 0.35 tolerated(0.06) possibly_damaging(0.839) TCGA-EE-A2A2-06 18 29340041 29340041 C T SLC25A52 Missense_Mutation p.G205D 0.36 tolerated(0.41) benign(0.068) TCGA-EE-A2A2-06 18 29340355 29340355 C T SLC25A52 Silent p.Q100Q 0.37 TCGA-EE-A2A2-06 18 29795084 29795084 G A MEP1B Missense_Mutation p.G540E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 18 29797810 29797810 C T MEP1B Missense_Mutation p.S658L 0.36 tolerated(0.26) benign(0.011) TCGA-EE-A2A2-06 18 30350137 30350161 CGAGCACCAGGCGCAGCCCGATGGA - KLHL14 Frame_Shift_Del p.I133Tfs*7 0.29 TCGA-EE-A2A2-06 18 3116369 3116369 C T MYOM1 Missense_Mutation p.R1088Q 0.39 tolerated(0.13) possibly_damaging(0.557) TCGA-EE-A2A2-06 18 31320151 31320151 G A ASXL3 Missense_Mutation p.G928E 0.38 possibly_damaging(0.548) TCGA-EE-A2A2-06 18 31803000 31803000 C T NOL4 Missense_Mutation p.G73E 0.40 tolerated(0.2) benign(0.307) TCGA-EE-A2A2-06 18 31803001 31803001 C G NOL4 Missense_Mutation p.G73R 0.40 tolerated(0.13) possibly_damaging(0.477) TCGA-EE-A2A2-06 18 31803068 31803068 G C NOL4 Missense_Mutation p.N50K 0.34 tolerated(0.15) probably_damaging(0.994) TCGA-EE-A2A2-06 18 3215125 3215125 T G MYOM1 Missense_Mutation p.K33Q 0.32 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A2A2-06 18 34359558 34359558 C T FHOD3 3'UTR 0.32 TCGA-EE-A2A2-06 18 34359559 34359559 C T FHOD3 3'UTR 0.40 TCGA-EE-A2A2-06 18 346625 346625 C T COLEC12 Missense_Mutation p.E333K 0.46 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2A2-06 18 34901826 34901826 C T CELF4 Missense_Mutation p.V130M 0.45 tolerated(0.26) possibly_damaging(0.659) TCGA-EE-A2A2-06 18 43252881 43252881 C T SLC14A2 Missense_Mutation p.P749L 0.30 deleterious(0.04) benign(0.302) TCGA-EE-A2A2-06 18 43328385 43328385 G A SLC14A1 Missense_Mutation p.A387T 0.41 tolerated(0.06) benign(0.073) TCGA-EE-A2A2-06 18 44036659 44036659 C T RNF165 3'UTR 0.35 TCGA-EE-A2A2-06 18 44555104 44555104 C T TCEB3C Nonsense_Mutation p.W370* 0.04 TCGA-EE-A2A2-06 18 47429091 47429091 C G MYO5B Missense_Mutation p.R895P 0.37 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 18 47432962 47432962 G A MYO5B Silent p.F747F 0.40 TCGA-EE-A2A2-06 18 47777856 47777856 G A CCDC11 Missense_Mutation p.L258F 0.42 tolerated(0.09) benign(0.076) TCGA-EE-A2A2-06 18 50450106 50450106 C T DCC Silent p.L243L 0.45 TCGA-EE-A2A2-06 18 54278309 54278309 T G TXNL1 Missense_Mutation p.Q252P 0.44 deleterious(0) probably_damaging(0.981) TCGA-EE-A2A2-06 18 61225604 61225604 T A SERPINB12 Missense_Mutation p.F63Y 0.35 tolerated(0.14) possibly_damaging(0.566) TCGA-EE-A2A2-06 18 61324104 61324104 C T SERPINB3 Missense_Mutation p.M243I 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A2-06 18 61471555 61471555 C T SERPINB7 Missense_Mutation p.P277S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 18 63548088 63548088 C G CDH7 Silent p.L772L 0.32 TCGA-EE-A2A2-06 18 67614037 67614037 G A CD226 Silent p.Y105Y 0.26 TCGA-EE-A2A2-06 18 67733128 67733128 G A RTTN Nonsense_Mutation p.Q1562* 0.37 TCGA-EE-A2A2-06 18 72109245 72109245 G A FAM69C Missense_Mutation p.S328L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 18 72109314 72109314 G A FAM69C Missense_Mutation p.P305L 0.39 deleterious(0) probably_damaging(0.978) TCGA-EE-A2A2-06 18 74631830 74631830 T C ZNF236 Silent p.L1123L 0.36 TCGA-EE-A2A2-06 18 76753692 76753692 C T SALL3 Silent p.S567S 0.31 TCGA-EE-A2A2-06 18 77894694 77894694 C T ADNP2 Silent p.I466I 0.37 TCGA-EE-A2A2-06 18 77917846 77917846 G A PARD6G Silent p.P313P 0.44 TCGA-EE-A2A2-06 18 77917847 77917847 G A PARD6G Missense_Mutation p.P313L 0.45 deleterious_low_confidence(0.01) benign(0.009) TCGA-EE-A2A2-06 18 9887912 9887912 G A TXNDC2 Nonsense_Mutation p.W479* 0.31 TCGA-EE-A2A2-06 18 9887913 9887913 G A TXNDC2 Nonsense_Mutation p.W479* 0.31 TCGA-EE-A2A2-06 19 10114341 10114341 C T COL5A3 Missense_Mutation p.G250E 0.47 unknown(0) TCGA-EE-A2A2-06 19 1047168 1047168 C T ABCA7 Missense_Mutation p.L620F 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 19 11118581 11118581 G A SMARCA4 Missense_Mutation p.E669K 0.32 benign(0.359) TCGA-EE-A2A2-06 19 11332692 11332692 A T DOCK6 Missense_Mutation p.F1129I 0.33 tolerated(0.11) benign(0.01) TCGA-EE-A2A2-06 19 11728690 11728690 C T ZNF627 Missense_Mutation p.P458S 0.31 tolerated_low_confidence(0.47) benign(0.012) TCGA-EE-A2A2-06 19 11978504 11978504 T A ZNF439 Missense_Mutation p.V207E 0.43 tolerated(0.05) benign(0.202) TCGA-EE-A2A2-06 19 12298386 12298386 G A ZNF136 Missense_Mutation p.G398E 0.31 tolerated(0.1) possibly_damaging(0.599) TCGA-EE-A2A2-06 19 12911090 12911090 C T PRDX2 Missense_Mutation p.G94E 0.40 deleterious(0) probably_damaging(0.982) TCGA-EE-A2A2-06 19 13033639 13033639 G A FARSA Silent p.L484L 0.37 TCGA-EE-A2A2-06 19 15052948 15052948 C T OR7C2 Silent p.F216F 0.41 TCGA-EE-A2A2-06 19 15198792 15198792 G A OR1I1 Missense_Mutation p.G306S 0.21 tolerated_low_confidence(0.84) benign(0.014) TCGA-EE-A2A2-06 19 15472548 15472548 G A AKAP8 Missense_Mutation p.P463L 0.31 tolerated(0.51) probably_damaging(1) TCGA-EE-A2A2-06 19 15739586 15739586 C T CYP4F8 RNA 0.31 TCGA-EE-A2A2-06 19 15756645 15756645 C T CYP4F3 Silent p.T105T 0.38 TCGA-EE-A2A2-06 19 16902221 16902221 G A NWD1 Missense_Mutation p.D1001N 0.31 tolerated(0.08) benign(0.14) TCGA-EE-A2A2-06 19 16902222 16902222 A T NWD1 Missense_Mutation p.D1001V 0.32 deleterious(0) possibly_damaging(0.461) TCGA-EE-A2A2-06 19 16905281 16905281 C T NWD1 Missense_Mutation p.S1074F 0.36 tolerated(0.07) possibly_damaging(0.6) TCGA-EE-A2A2-06 19 17163694 17163694 C A HAUS8 Silent p.V290V 0.34 TCGA-EE-A2A2-06 19 17599665 17599683 GCATGGCAGCCTTCGGCCA - SLC27A1 Frame_Shift_Del p.R268Pfs*36 0.16 TCGA-EE-A2A2-06 19 17737533 17737533 C T UNC13A Missense_Mutation p.G1328S 0.37 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A2A2-06 19 17785529 17785529 T C UNC13A Missense_Mutation p.N30S 0.36 deleterious_low_confidence(0) benign(0.393) TCGA-EE-A2A2-06 19 17836861 17836861 C T MAP1S Missense_Mutation p.P223L 0.33 deleterious(0.02) benign(0.024) TCGA-EE-A2A2-06 19 1954170 1954170 C T CSNK1G2 Intron 0.37 TCGA-EE-A2A2-06 19 1954171 1954171 C T CSNK1G2 Intron 0.37 TCGA-EE-A2A2-06 19 19627014 19627014 C T NDUFA13 5'UTR 0.42 TCGA-EE-A2A2-06 19 19627015 19627015 C T NDUFA13 5'UTR 0.38 TCGA-EE-A2A2-06 19 19735326 19735326 A G LPAR2 Silent p.G265G 0.33 TCGA-EE-A2A2-06 19 22574359 22574359 T A ZNF98 Nonsense_Mutation p.K560* 0.54 TCGA-EE-A2A2-06 19 2278609 2278609 C T C19orf35 Missense_Mutation p.D196N 0.35 deleterious(0.02) benign(0.288) TCGA-EE-A2A2-06 19 2278610 2278610 C T C19orf35 Silent p.E195E 0.35 TCGA-EE-A2A2-06 19 2936681 2936681 G A ZNF77 Missense_Mutation p.T51I 0.39 tolerated(0.07) benign(0.237) TCGA-EE-A2A2-06 19 30935622 30935622 C T ZNF536 Missense_Mutation p.P385S 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 19 30936358 30936358 C T ZNF536 Missense_Mutation p.P630L 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 19 33706762 33706762 G A SLC7A10 Missense_Mutation p.S90F 0.30 deleterious(0) probably_damaging(0.925) TCGA-EE-A2A2-06 19 35233132 35233132 T A ZNF181 3'Flank 0.49 TCGA-EE-A2A2-06 19 35501050 35501050 C T GRAMD1A Missense_Mutation p.S127F 0.37 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 19 36125256 36125256 C T RBM42 Silent p.S372S 0.36 TCGA-EE-A2A2-06 19 36125257 36125257 C T RBM42 Silent p.L373L 0.36 TCGA-EE-A2A2-06 19 36213929 36213929 C T KMT2B Missense_Mutation p.P919S 0.41 benign(0.032) TCGA-EE-A2A2-06 19 36333054 36333054 C T NPHS1 Missense_Mutation p.G879R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 19 36341860 36341860 C T NPHS1 Intron 0.32 TCGA-EE-A2A2-06 19 36967507 36967507 A C ZNF566 5'UTR 0.31 TCGA-EE-A2A2-06 19 37440439 37440439 C T ZNF568 Silent p.I128I 0.32 TCGA-EE-A2A2-06 19 37880001 37880001 G A ZNF527 Silent p.R350R 0.39 TCGA-EE-A2A2-06 19 38190356 38190356 C T ZNF607 Missense_Mutation p.E226K 0.34 tolerated(0.47) benign(0.096) TCGA-EE-A2A2-06 19 39025372 39025372 G A RYR1 Missense_Mutation p.E3758K 0.39 benign(0.001) TCGA-EE-A2A2-06 19 39103298 39103298 G A MAP4K1 Silent p.I206I 0.36 TCGA-EE-A2A2-06 19 40430452 40430452 C T FCGBP Silent p.T497T 0.31 TCGA-EE-A2A2-06 19 40741983 40741983 G A AKT2 Missense_Mutation p.A330V 0.36 deleterious(0) probably_damaging(0.958) TCGA-EE-A2A2-06 19 41025435 41025435 G A SPTBN4 Missense_Mutation p.E1011K 0.36 deleterious(0.04) possibly_damaging(0.828) TCGA-EE-A2A2-06 19 41250078 41250078 G A C19orf54 Nonsense_Mutation p.Q181* 0.34 TCGA-EE-A2A2-06 19 41263307 41263307 C T SNRPA Silent p.S48S 0.38 TCGA-EE-A2A2-06 19 41263308 41263308 C T SNRPA Silent p.L49L 0.39 TCGA-EE-A2A2-06 19 41351362 41351362 C T CYP2A6 Missense_Mutation p.R333K 0.34 benign(0.186) TCGA-EE-A2A2-06 19 41386417 41386417 C T CYP2A7 Missense_Mutation p.G154S 0.25 tolerated(0.33) benign(0.17) TCGA-EE-A2A2-06 19 41386418 41386418 C T CYP2A7 Silent p.S153S 0.25 TCGA-EE-A2A2-06 19 41518286 41518286 G A CYP2B6 Missense_Mutation p.E350K 0.40 deleterious(0) possibly_damaging(0.654) TCGA-EE-A2A2-06 19 41765525 41765525 G A AXL Missense_Mutation p.E801K 0.33 tolerated(0.16) possibly_damaging(0.733) TCGA-EE-A2A2-06 19 42133393 42133393 G A CEACAM4 5'UTR 0.29 TCGA-EE-A2A2-06 19 42222055 42222055 G A CEACAM5 Missense_Mutation p.D416N 0.36 tolerated(0.05) probably_damaging(0.964) TCGA-EE-A2A2-06 19 4268704 4268704 G A CCDC94 3'UTR 0.39 TCGA-EE-A2A2-06 19 4283124 4283124 C T SHD Silent p.P159P 0.32 TCGA-EE-A2A2-06 19 4288335 4288335 C T SHD Missense_Mutation p.P271L 0.45 tolerated(0.07) possibly_damaging(0.555) TCGA-EE-A2A2-06 19 43262211 43262211 C T PSG8 Missense_Mutation p.E218K 0.35 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 19 43372477 43372477 G A PSG1 Missense_Mutation p.S340L 0.28 deleterious(0) benign(0.274) TCGA-EE-A2A2-06 19 43428838 43428838 G A PSG7 3'UTR 0.45 TCGA-EE-A2A2-06 19 44223308 44223308 G A IRGC Missense_Mutation p.E200K 0.36 tolerated(0.5) benign(0.321) TCGA-EE-A2A2-06 19 44492679 44492679 C T ZNF155 5'UTR 0.38 TCGA-EE-A2A2-06 19 44933888 44933888 C T ZNF229 Silent p.K356K 0.30 TCGA-EE-A2A2-06 19 46375989 46375989 C T FOXA3 Silent p.T242T 0.44 TCGA-EE-A2A2-06 19 47285682 47285682 G A SLC1A5 Missense_Mutation p.S261F 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2A2-06 19 47354122 47354122 C T AP2S1 5'UTR 0.34 TCGA-EE-A2A2-06 19 47571034 47571034 G A ZC3H4 Nonsense_Mutation p.R831* 0.36 TCGA-EE-A2A2-06 19 4793084 4793084 C T FEM1A Silent p.F406F 0.37 TCGA-EE-A2A2-06 19 48565294 48565294 G A PLA2G4C Silent p.L416L 0.40 TCGA-EE-A2A2-06 19 48643362 48643362 G A LIG1 Missense_Mutation p.S318F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 19 49119171 49119171 A T RPL18 Missense_Mutation p.F152I 0.40 deleterious(0.02) benign(0.005) TCGA-EE-A2A2-06 19 49167959 49167959 C T NTN5 Missense_Mutation p.G233S 0.40 tolerated(0.55) probably_damaging(0.994) TCGA-EE-A2A2-06 19 49470089 49470089 C G FTL 3'UTR 0.36 TCGA-EE-A2A2-06 19 49633253 49633253 C T PPFIA3 Silent p.L196L 0.45 TCGA-EE-A2A2-06 19 49850485 49850485 G A TEAD2 Missense_Mutation p.R295C 0.38 deleterious(0) possibly_damaging(0.712) TCGA-EE-A2A2-06 19 49940005 49940005 C T SLC17A7 Missense_Mutation p.G39E 0.37 tolerated(0.13) probably_damaging(0.95) TCGA-EE-A2A2-06 19 49940006 49940006 C T SLC17A7 Missense_Mutation p.G39R 0.37 deleterious(0) probably_damaging(0.931) TCGA-EE-A2A2-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.39 TCGA-EE-A2A2-06 19 50170415 50170415 C A BCL2L12 Missense_Mutation p.P167T 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 19 50209263 50209263 C T CPT1C Silent p.S354S 0.38 TCGA-EE-A2A2-06 19 50249957 50249957 C T TSKS Silent p.E254E 0.45 TCGA-EE-A2A2-06 19 51171679 51171679 C T SHANK1 Missense_Mutation p.E1180K 0.44 unknown(0) TCGA-EE-A2A2-06 19 51455882 51455882 A C KLK5 Missense_Mutation p.V11G 0.28 deleterious(0.01) benign(0.007) TCGA-EE-A2A2-06 19 51530847 51530847 C T KLK11 5'UTR 0.35 TCGA-EE-A2A2-06 19 52033094 52033094 G A SIGLEC6 Missense_Mutation p.S299F 0.38 tolerated(0.22) possibly_damaging(0.531) TCGA-EE-A2A2-06 19 52250226 52250226 G A FPR1 Missense_Mutation p.P8S 0.29 tolerated(0.12) benign(0.045) TCGA-EE-A2A2-06 19 5231452 5231452 G A PTPRS Missense_Mutation p.P675L 0.34 tolerated(0.1) benign(0.198) TCGA-EE-A2A2-06 19 52505120 52505120 G A ZNF615 Nonsense_Mutation p.R62* 0.21 TCGA-EE-A2A2-06 19 52505121 52505121 T A ZNF615 Missense_Mutation p.E61D 0.21 tolerated(0.07) benign(0.064) TCGA-EE-A2A2-06 19 52619667 52619667 G T ZNF616 Missense_Mutation p.F250L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 19 53056804 53056804 C T ZNF808 Missense_Mutation p.P212L 0.35 tolerated(0.15) benign(0.058) TCGA-EE-A2A2-06 19 54466543 54466543 C T CACNG8 Silent p.A49A 0.37 TCGA-EE-A2A2-06 19 54544082 54544082 C T VSTM1 3'UTR 0.36 TCGA-EE-A2A2-06 19 54759954 54759954 G A LILRB5 Missense_Mutation p.P203S 0.34 deleterious(0.04) possibly_damaging(0.772) TCGA-EE-A2A2-06 19 54844919 54844919 G A LILRA4 Missense_Mutation p.P475L 0.38 deleterious(0.02) benign(0.011) TCGA-EE-A2A2-06 19 549174 549174 G C GZMM Missense_Mutation p.A201P 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2A2-06 19 55816724 55816724 G A BRSK1 Missense_Mutation p.E585K 0.36 deleterious(0.01) benign(0.346) TCGA-EE-A2A2-06 19 56206590 56206590 C A EPN1 Silent p.L619L 0.44 TCGA-EE-A2A2-06 19 56206591 56206591 C T EPN1 Missense_Mutation p.R620C 0.43 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A2-06 19 56243633 56243633 C T NLRP9 Missense_Mutation p.E522K 0.33 deleterious(0.02) possibly_damaging(0.788) TCGA-EE-A2A2-06 19 56321645 56321645 G A NLRP11 Missense_Mutation p.H111Y 0.33 tolerated(0.2) benign(0.091) TCGA-EE-A2A2-06 19 56369416 56369416 C T NLRP4 Silent p.I219I 0.32 TCGA-EE-A2A2-06 19 56539571 56539571 C T NLRP5 Missense_Mutation p.P658S 0.35 tolerated(0.39) benign(0.077) TCGA-EE-A2A2-06 19 5757867 5757867 A G CATSPERD Missense_Mutation p.N431S 0.35 deleterious(0) benign(0.173) TCGA-EE-A2A2-06 19 577991 577991 C T BSG Silent p.I95I 0.41 TCGA-EE-A2A2-06 19 578036 578036 C T BSG Silent p.A110A 0.36 TCGA-EE-A2A2-06 19 57955633 57955633 C T ZNF749 Nonsense_Mutation p.Q373* 0.37 TCGA-EE-A2A2-06 19 5843807 5843807 G A FUT3 Silent p.S348S 0.42 TCGA-EE-A2A2-06 19 58718408 58718408 G A ZNF274 Silent p.K192K 0.39 TCGA-EE-A2A2-06 19 58718409 58718409 G A ZNF274 Missense_Mutation p.A193T 0.39 tolerated(0.33) benign(0.169) TCGA-EE-A2A2-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.34 TCGA-EE-A2A2-06 19 6183239 6183239 G A ACSBG2 Silent p.S426S 0.32 TCGA-EE-A2A2-06 19 6389649 6389649 C T GTF2F1 Splice_Site p.X45_splice 0.40 TCGA-EE-A2A2-06 19 6670004 6670004 C T TNFSF14 Missense_Mutation p.R26Q 0.38 tolerated(0.19) benign(0.004) TCGA-EE-A2A2-06 19 6697806 6697806 C T C3 Splice_Site p.X814_splice 0.35 TCGA-EE-A2A2-06 19 731131 731131 C T PALM Silent p.D102D 0.35 TCGA-EE-A2A2-06 19 7763263 7763263 C T FCER2 Missense_Mutation p.E57K 0.37 tolerated(0.13) probably_damaging(0.972) TCGA-EE-A2A2-06 19 8174164 8174164 G A FBN3 Missense_Mutation p.S1522F 0.29 deleterious(0.01) possibly_damaging(0.716) TCGA-EE-A2A2-06 19 8389897 8389897 C T KANK3 Missense_Mutation p.E674K 0.35 tolerated(0.05) possibly_damaging(0.486) TCGA-EE-A2A2-06 19 8431098 8431098 G A ANGPTL4 Missense_Mutation p.D148N 0.33 tolerated(0.52) benign(0.063) TCGA-EE-A2A2-06 19 8486870 8486870 C T MARCH2 Missense_Mutation p.S49F 0.35 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2A2-06 19 8563693 8563693 G A PRAM1 Silent p.S333S 0.46 TCGA-EE-A2A2-06 19 9049457 9049457 G A MUC16 Missense_Mutation p.P10725L 0.34 benign(0.007) TCGA-EE-A2A2-06 19 9057986 9057986 G A MUC16 Silent p.S9820S 0.34 TCGA-EE-A2A2-06 19 9062265 9062265 G A MUC16 Missense_Mutation p.S8394F 0.49 unknown(0) TCGA-EE-A2A2-06 19 9065268 9065268 G A MUC16 Missense_Mutation p.S7393F 0.45 unknown(0) TCGA-EE-A2A2-06 19 9066502 9066502 C T MUC16 Missense_Mutation p.E6982K 0.35 unknown(0) TCGA-EE-A2A2-06 19 9070884 9070884 C T MUC16 Missense_Mutation p.R5521K 0.41 unknown(0) TCGA-EE-A2A2-06 19 9074523 9074523 C A MUC16 Missense_Mutation p.G4308V 0.41 unknown(0) TCGA-EE-A2A2-06 19 9074994 9074994 G A MUC16 Missense_Mutation p.P4151L 0.39 unknown(0) TCGA-EE-A2A2-06 19 9077717 9077717 T C MUC16 Silent p.E3243E 0.40 TCGA-EE-A2A2-06 19 9085475 9085475 G A MUC16 Nonsense_Mutation p.Q2114* 0.36 TCGA-EE-A2A2-06 19 9204400 9204400 C T OR1M1 Silent p.I160I 0.36 TCGA-EE-A2A2-06 19 9677121 9677121 G A ZNF121 Missense_Mutation p.T223I 0.35 deleterious(0.05) benign(0.066) TCGA-EE-A2A2-06 19 9764094 9764094 T C ZNF562 Missense_Mutation p.N271S 0.23 tolerated(0.46) benign(0.391) TCGA-EE-A2A2-06 19 9768812 9768812 C T ZNF562 Splice_Site p.X39_splice 0.56 TCGA-EE-A2A2-06 19 9868912 9868912 G A ZNF846 Missense_Mutation p.P281S 0.35 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A2A2-06 1 10500419 10500419 C T APITD1 Silent p.T75T 0.29 TCGA-EE-A2A2-06 1 109477531 109477531 C T CLCC1 Missense_Mutation p.E473K 0.40 tolerated(0.18) possibly_damaging(0.734) TCGA-EE-A2A2-06 1 110022024 110022024 C T SYPL2 Silent p.L225L 0.36 TCGA-EE-A2A2-06 1 111060112 111060112 C T KCNA10 Missense_Mutation p.G433E 0.27 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A2A2-06 1 111060471 111060471 G A KCNA10 Silent p.I313I 0.36 TCGA-EE-A2A2-06 1 111146754 111146754 G A KCNA2 Silent p.S217S 0.36 TCGA-EE-A2A2-06 1 112298438 112298438 G A DDX20 5'UTR 0.42 TCGA-EE-A2A2-06 1 112298439 112298439 G A DDX20 5'UTR 0.41 TCGA-EE-A2A2-06 1 113661932 113661932 C T LRIG2 Missense_Mutation p.P920S 0.40 deleterious(0.04) probably_damaging(0.971) TCGA-EE-A2A2-06 1 114454578 114454578 C T DCLRE1B Missense_Mutation p.S455F 0.40 tolerated_low_confidence(0.11) benign(0.173) TCGA-EE-A2A2-06 1 114682401 114682401 C T SYT6 Silent p.A31A 0.36 TCGA-EE-A2A2-06 1 115238105 115238105 C T AMPD1 Silent p.R29R 0.31 TCGA-EE-A2A2-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.35 deleterious(0) benign(0.109) TCGA-EE-A2A2-06 1 115256530 115256530 G A NRAS Nonsense_Mutation p.Q61* 0.35 TCGA-EE-A2A2-06 1 11580751 11580751 C T PTCHD2 Silent p.F736F 0.36 TCGA-EE-A2A2-06 1 11709882 11709882 C T FBXO2 Missense_Mutation p.E191K 0.33 tolerated(0.12) benign(0.387) TCGA-EE-A2A2-06 1 11709883 11709883 C T FBXO2 Nonsense_Mutation p.W190* 0.34 TCGA-EE-A2A2-06 1 118534050 118534050 G A SPAG17 Silent p.L1821L 0.37 TCGA-EE-A2A2-06 1 118548078 118548078 C T SPAG17 Missense_Mutation p.V1579I 0.31 tolerated(0.37) benign(0.021) TCGA-EE-A2A2-06 1 118548079 118548079 C T SPAG17 Silent p.E1578E 0.31 TCGA-EE-A2A2-06 1 120165658 120165658 G A ZNF697 Silent p.P436P 0.31 TCGA-EE-A2A2-06 1 120300032 120300032 C T HMGCS2 Missense_Mutation p.D294N 0.39 tolerated(0.22) probably_damaging(0.999) TCGA-EE-A2A2-06 1 1203256 1203256 C T UBE2J2 Silent p.S39S 0.42 TCGA-EE-A2A2-06 1 120336763 120336763 G A REG4 3'UTR 0.35 TCGA-EE-A2A2-06 1 120345601 120345601 G A REG4 Intron 0.35 TCGA-EE-A2A2-06 1 12251980 12251980 G A TNFRSF1B Missense_Mutation p.G153R 0.28 tolerated(0.15) benign(0.073) TCGA-EE-A2A2-06 1 12854298 12854298 G A PRAMEF1 Silent p.R174R 0.24 TCGA-EE-A2A2-06 1 12887161 12887161 C T PRAMEF11 Silent p.K232K 0.26 TCGA-EE-A2A2-06 1 12888590 12888590 C T PRAMEF11 5'UTR 0.06 TCGA-EE-A2A2-06 1 1396178 1396178 C T ATAD3C Silent p.A287A 0.41 TCGA-EE-A2A2-06 1 144520950 144520950 G A AL592284.1 3'UTR 0.25 TCGA-EE-A2A2-06 1 150131106 150131106 C T PLEKHO1 Silent p.S206S 0.55 TCGA-EE-A2A2-06 1 150484887 150484887 C T ECM1 Silent p.H408H 0.24 TCGA-EE-A2A2-06 1 1509893 1509893 G T SSU72 Missense_Mutation p.N15K 0.36 deleterious(0) possibly_damaging(0.749) TCGA-EE-A2A2-06 1 151115037 151115037 G A SEMA6C Missense_Mutation p.H21Y 0.52 tolerated(0.26) benign(0) TCGA-EE-A2A2-06 1 151171381 151171381 C T PIP5K1A 5'UTR 0.56 TCGA-EE-A2A2-06 1 151214646 151214646 C T PIP5K1A Missense_Mutation p.R471W 0.28 tolerated(0.07) possibly_damaging(0.762) TCGA-EE-A2A2-06 1 151260472 151260472 C T ZNF687 Missense_Mutation p.R569C 0.24 deleterious(0) possibly_damaging(0.769) TCGA-EE-A2A2-06 1 151958702 151958702 G A S100A10 Missense_Mutation p.P2L 0.45 tolerated(0.05) benign(0.049) TCGA-EE-A2A2-06 1 151958704 151958704 C A S100A10 Translation_Start_Site p.M1? 0.45 deleterious(0.03) benign(0.016) TCGA-EE-A2A2-06 1 152191815 152191815 C T HRNR Missense_Mutation p.G764S 0.57 unknown(0) TCGA-EE-A2A2-06 1 152325726 152325726 C T FLG2 Silent p.G1512G 0.53 TCGA-EE-A2A2-06 1 152484087 152484087 C T LCE5A Missense_Mutation p.P26L 0.57 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A2-06 1 153012574 153012574 C T SPRR2D 3'UTR 0.54 TCGA-EE-A2A2-06 1 153533746 153533746 C T S100A2 3'UTR 0.21 TCGA-EE-A2A2-06 1 153653110 153653110 C T NPR1 Silent p.G285G 0.29 TCGA-EE-A2A2-06 1 15386692 15386692 C T KAZN Missense_Mutation p.S314F 0.40 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2A2-06 1 154295777 154295777 C T AQP10 Missense_Mutation p.S144F 0.52 tolerated(0.72) probably_damaging(0.998) TCGA-EE-A2A2-06 1 155279920 155279920 C T FDPS Missense_Mutation p.S88F 0.27 deleterious(0.03) possibly_damaging(0.567) TCGA-EE-A2A2-06 1 156252434 156252434 G A SMG5 Missense_Mutation p.P13L 0.53 deleterious_low_confidence(0.02) benign(0.014) TCGA-EE-A2A2-06 1 1563761 1563761 C G MIB2 Silent p.A765A 0.40 TCGA-EE-A2A2-06 1 156533598 156533598 C T IQGAP3 Silent p.L152L 0.21 TCGA-EE-A2A2-06 1 156815088 156815088 C T INSRR Silent p.R739R 0.56 TCGA-EE-A2A2-06 1 157522119 157522119 C T FCRL5 Intron 0.27 TCGA-EE-A2A2-06 1 157548633 157548633 G A FCRL4 Silent p.P429P 0.65 TCGA-EE-A2A2-06 1 157548634 157548634 G A FCRL4 Missense_Mutation p.P429L 0.67 tolerated(0.27) benign(0.007) TCGA-EE-A2A2-06 1 158152078 158152078 G A CD1D Silent p.G195G 0.24 TCGA-EE-A2A2-06 1 15821896 15821896 G A CASP9 Missense_Mutation p.S307F 0.36 deleterious(0.01) possibly_damaging(0.56) TCGA-EE-A2A2-06 1 158577016 158577016 A T OR10Z1 Missense_Mutation p.K263I 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 1 158577087 158577087 C T OR10Z1 Missense_Mutation p.P287S 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2A2-06 1 158669637 158669637 A C OR6K2 Missense_Mutation p.L269W 0.52 tolerated(0.19) possibly_damaging(0.895) TCGA-EE-A2A2-06 1 158946490 158946490 G A PYHIN1 Splice_Site 0.47 TCGA-EE-A2A2-06 1 159175422 159175422 T G DARC Missense_Mutation p.F67V 0.04 deleterious(0) possibly_damaging(0.695) TCGA-EE-A2A2-06 1 159683618 159683618 G A CRP Silent p.I124I 0.27 TCGA-EE-A2A2-06 1 159921444 159921444 G A SLAMF9 3'UTR 0.50 TCGA-EE-A2A2-06 1 160209837 160209837 G A DCAF8 Missense_Mutation p.R125C 0.58 tolerated(0.21) benign(0.002) TCGA-EE-A2A2-06 1 160209838 160209838 G A DCAF8 Silent p.N124N 0.58 TCGA-EE-A2A2-06 1 160260464 160260464 G A COPA Silent p.L1154L 0.24 TCGA-EE-A2A2-06 1 160535312 160535312 C T CD84 Silent p.P90P 0.45 TCGA-EE-A2A2-06 1 16058884 16058884 T C PLEKHM2 Missense_Mutation p.C889R 0.05 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 1 160920967 160920967 G A ITLN2 Missense_Mutation p.R103C 0.23 tolerated(0.13) possibly_damaging(0.631) TCGA-EE-A2A2-06 1 161046224 161046224 G A PVRL4 Silent p.L258L 0.57 TCGA-EE-A2A2-06 1 162345160 162345160 G A C1orf111 Missense_Mutation p.S46F 0.56 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A2A2-06 1 163298690 163298690 A T NUF2 Silent p.L110L 0.56 TCGA-EE-A2A2-06 1 165173235 165173235 G A LMX1A Missense_Mutation p.S344F 0.43 deleterious(0) probably_damaging(0.985) TCGA-EE-A2A2-06 1 16532128 16532128 G A ARHGEF19 Missense_Mutation p.R496C 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 1 166926004 166926004 C T ILDR2 Silent p.G155G 0.53 TCGA-EE-A2A2-06 1 168065809 168065809 G A GPR161 Missense_Mutation p.R366W 0.54 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A2-06 1 169267912 169267912 C T NME7 Missense_Mutation p.G177E 0.26 deleterious(0) probably_damaging(0.952) TCGA-EE-A2A2-06 1 169484718 169484718 C T F5 Nonsense_Mutation p.W2164* 0.23 TCGA-EE-A2A2-06 1 17033878 17033878 C T ESPNP RNA 0.10 TCGA-EE-A2A2-06 1 17277559 17277559 C T CROCC Missense_Mutation p.S983F 0.36 probably_damaging(0.935) TCGA-EE-A2A2-06 1 173470208 173470208 C T SLC9C2 3'UTR 0.44 TCGA-EE-A2A2-06 1 173552678 173552678 G A SLC9C2 Missense_Mutation p.R203W 0.22 deleterious(0) probably_damaging(0.976) TCGA-EE-A2A2-06 1 173556818 173556818 G A SLC9C2 Missense_Mutation p.S170L 0.29 tolerated(0.31) benign(0.438) TCGA-EE-A2A2-06 1 173616142 173616142 G A ANKRD45 Silent p.L113L 0.67 TCGA-EE-A2A2-06 1 173703100 173703100 C T KLHL20 Missense_Mutation p.P91L 0.58 deleterious(0.01) benign(0.109) TCGA-EE-A2A2-06 1 175046873 175046873 G A TNN Missense_Mutation p.D107N 0.51 deleterious(0.05) possibly_damaging(0.603) TCGA-EE-A2A2-06 1 175087881 175087881 G A TNN Silent p.P857P 0.57 TCGA-EE-A2A2-06 1 175334168 175334168 G A TNR Silent p.P855P 0.43 TCGA-EE-A2A2-06 1 176927615 176927615 G A ASTN1 Silent p.F534F 0.29 TCGA-EE-A2A2-06 1 176998583 176998583 G A ASTN1 Intron 0.44 TCGA-EE-A2A2-06 1 177225096 177225096 G A BRINP2 Missense_Mutation p.R104K 0.18 tolerated(0.26) benign(0.03) TCGA-EE-A2A2-06 1 177250822 177250822 G A BRINP2 3'UTR 0.52 TCGA-EE-A2A2-06 1 17764779 17764779 C T RCC2 Missense_Mutation p.A78T 0.45 tolerated(0.43) unknown(0) TCGA-EE-A2A2-06 1 178427384 178427384 C T RASAL2 Missense_Mutation p.S986F 0.59 deleterious(0) benign(0.004) TCGA-EE-A2A2-06 1 178427385 178427385 C T RASAL2 Silent p.S986S 0.59 TCGA-EE-A2A2-06 1 178490433 178490433 G A TEX35 Intron 0.26 TCGA-EE-A2A2-06 1 178491476 178491476 G A TEX35 Silent p.E201E 0.29 TCGA-EE-A2A2-06 1 181058213 181058213 G A IER5 Missense_Mutation p.G59S 0.33 tolerated(0.12) benign(0.176) TCGA-EE-A2A2-06 1 182922015 182922015 G A SHCBP1L Missense_Mutation p.A85V 0.27 tolerated_low_confidence(0.17) benign(0.004) TCGA-EE-A2A2-06 1 183543646 183543646 G A NCF2 Silent p.I159I 0.56 TCGA-EE-A2A2-06 1 184801032 184801032 C T FAM129A Silent p.Q222Q 0.29 TCGA-EE-A2A2-06 1 185175888 185175888 C T SWT1 Silent p.L655L 0.50 TCGA-EE-A2A2-06 1 185894182 185894182 C A HMCN1 Missense_Mutation p.A430D 0.22 probably_damaging(0.987) TCGA-EE-A2A2-06 1 186052055 186052055 C T HMCN1 Missense_Mutation p.A2949V 0.35 probably_damaging(0.996) TCGA-EE-A2A2-06 1 186107027 186107027 C T HMCN1 Missense_Mutation p.P4616L 0.32 probably_damaging(0.997) TCGA-EE-A2A2-06 1 196227391 196227391 T C KCNT2 Silent p.E1048E 0.45 TCGA-EE-A2A2-06 1 196757491 196757491 T C CFHR3 Silent p.C192C 0.33 TCGA-EE-A2A2-06 1 196884135 196884135 C T CFHR4 Silent p.T468T 0.42 TCGA-EE-A2A2-06 1 197029555 197029555 C T F13B Missense_Mutation p.G249E 0.54 tolerated(0.31) probably_damaging(0.979) TCGA-EE-A2A2-06 1 197071299 197071299 G A ASPM Missense_Mutation p.S2361F 0.28 deleterious(0) probably_damaging(0.984) TCGA-EE-A2A2-06 1 197407909 197407909 G A CRB1 Intron 0.55 TCGA-EE-A2A2-06 1 198498228 198498228 G A ATP6V1G3 Nonsense_Mutation p.R56* 0.28 TCGA-EE-A2A2-06 1 201030530 201030530 C T CACNA1S Silent p.E1040E 0.29 TCGA-EE-A2A2-06 1 202698044 202698044 A G KDM5B 3'UTR 0.31 TCGA-EE-A2A2-06 1 202701055 202701055 G A KDM5B Missense_Mutation p.P1308S 0.30 tolerated(0.26) benign(0.003) TCGA-EE-A2A2-06 1 203668664 203668664 T C ATP2B4 Silent p.L156L 0.58 TCGA-EE-A2A2-06 1 20474925 20474925 G A PLA2G2F 3'UTR 0.38 TCGA-EE-A2A2-06 1 20517564 20517564 G A UBXN10 Silent p.V170V 0.40 TCGA-EE-A2A2-06 1 20517565 20517565 G A UBXN10 Missense_Mutation p.E171K 0.40 deleterious(0.05) possibly_damaging(0.531) TCGA-EE-A2A2-06 1 205814567 205814567 G A PM20D1 Silent p.H125H 0.28 TCGA-EE-A2A2-06 1 206767007 206767007 G A EIF2D Nonsense_Mutation p.Q549* 0.24 TCGA-EE-A2A2-06 1 207642195 207642195 C T CR2 Missense_Mutation p.P229S 0.55 deleterious(0.03) benign(0.444) TCGA-EE-A2A2-06 1 207850845 207850845 C T CR1L Missense_Mutation p.S70F 0.43 tolerated(0.47) benign(0.001) TCGA-EE-A2A2-06 1 209796891 209796891 C T LAMB3 Missense_Mutation p.E773K 0.51 tolerated(0.08) benign(0.063) TCGA-EE-A2A2-06 1 209803111 209803111 G A LAMB3 Missense_Mutation p.P368L 0.26 deleterious(0.04) benign(0.112) TCGA-EE-A2A2-06 1 212799806 212799806 C T FAM71A Silent p.F529F 0.52 TCGA-EE-A2A2-06 1 214170561 214170561 G A PROX1 Missense_Mutation p.R228Q 0.55 tolerated(0.1) probably_damaging(0.98) TCGA-EE-A2A2-06 1 215847603 215847603 C T USH2A Silent p.V4550V 0.19 TCGA-EE-A2A2-06 1 21807440 21807440 G A NBPF3 Missense_Mutation p.E467K 0.28 tolerated(0.13) possibly_damaging(0.899) TCGA-EE-A2A2-06 1 21894683 21894683 G A ALPL Silent p.T245T 0.42 TCGA-EE-A2A2-06 1 22204701 22204701 G A HSPG2 Missense_Mutation p.S888F 0.33 possibly_damaging(0.633) TCGA-EE-A2A2-06 1 222860955 222860955 A G AIDA Missense_Mutation p.V112A 0.52 deleterious(0) probably_damaging(0.985) TCGA-EE-A2A2-06 1 222919938 222919938 C T FAM177B Silent p.S17S 0.18 TCGA-EE-A2A2-06 1 223567632 223567632 G A C1orf65 Missense_Mutation p.R272K 0.56 tolerated(0.33) benign(0.107) TCGA-EE-A2A2-06 1 226055587 226055587 C T TMEM63A Splice_Site p.X172_splice 0.50 TCGA-EE-A2A2-06 1 227968362 227968362 G A SNAP47 Silent p.K461K 0.20 TCGA-EE-A2A2-06 1 228210433 228210433 C T WNT3A Missense_Mutation p.P46L 0.31 tolerated(0.08) benign(0.344) TCGA-EE-A2A2-06 1 228456411 228456411 G A OBSCN Missense_Mutation p.R1865Q 0.54 probably_damaging(0.988) TCGA-EE-A2A2-06 1 23233372 23233372 G A EPHB2 Silent p.E687E 0.31 TCGA-EE-A2A2-06 1 23236991 23236991 C T EPHB2 Silent p.F874F 0.35 TCGA-EE-A2A2-06 1 233134934 233134934 C T PCNXL2 Silent p.G1840G 0.58 TCGA-EE-A2A2-06 1 233512231 233512231 C T MLK4 Nonsense_Mutation p.Q628* 0.41 TCGA-EE-A2A2-06 1 233514855 233514855 C T MLK4 Silent p.S701S 0.27 TCGA-EE-A2A2-06 1 233807324 233807324 G A KCNK1 3'UTR 0.22 TCGA-EE-A2A2-06 1 23520573 23520573 A T HTR1D Missense_Mutation p.V47D 0.36 deleterious(0.01) benign(0.136) TCGA-EE-A2A2-06 1 23520574 23520574 C T HTR1D Missense_Mutation p.V47I 0.36 tolerated(0.85) benign(0.001) TCGA-EE-A2A2-06 1 235972583 235972583 T C LYST Missense_Mutation p.H512R 0.34 deleterious(0) probably_damaging(0.985) TCGA-EE-A2A2-06 1 23697670 23697670 C T C1orf213 3'UTR 0.41 TCGA-EE-A2A2-06 1 237947744 237947744 C T RYR2 Silent p.A4244A 0.48 TCGA-EE-A2A2-06 1 2411717 2411717 A G PLCH2 Missense_Mutation p.N177S 0.37 deleterious(0.03) possibly_damaging(0.841) TCGA-EE-A2A2-06 1 24409232 24409232 G A MYOM3 Intron 0.38 TCGA-EE-A2A2-06 1 246784911 246784911 G A CNST Missense_Mutation p.R187K 0.24 tolerated(0.46) probably_damaging(0.948) TCGA-EE-A2A2-06 1 246923342 246923342 T G SCCPDH Missense_Mutation p.F299L 0.34 tolerated(1) benign(0.013) TCGA-EE-A2A2-06 1 247150635 247150635 G A ZNF695 Silent p.Y394Y 0.42 TCGA-EE-A2A2-06 1 247588522 247588522 G A NLRP3 Missense_Mutation p.E593K 0.49 deleterious(0) possibly_damaging(0.541) TCGA-EE-A2A2-06 1 247752384 247752384 C T OR2G2 Silent p.F241F 0.60 TCGA-EE-A2A2-06 1 247875599 247875599 G A OR6F1 Silent p.F153F 0.19 TCGA-EE-A2A2-06 1 248262730 248262730 C T OR2L13 Missense_Mutation p.P18L 0.19 tolerated(0.05) benign(0.013) TCGA-EE-A2A2-06 1 248343287 248343287 C A OR2M2 5'Flank 0.47 TCGA-EE-A2A2-06 1 248684994 248684994 G A OR2G6 Missense_Mutation p.G16E 0.49 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A2-06 1 25655545 25655545 G T RHD 3'UTR 0.81 TCGA-EE-A2A2-06 1 25655547 25655547 G A RHD 3'UTR 0.81 TCGA-EE-A2A2-06 1 27088784 27088784 C T ARID1A Missense_Mutation p.P798L 0.28 unknown(0) TCGA-EE-A2A2-06 1 27088785 27088785 C T ARID1A Silent p.P798P 0.28 TCGA-EE-A2A2-06 1 27277248 27277248 C T C1orf172 Splice_Site p.X347_splice 0.38 TCGA-EE-A2A2-06 1 31810109 31810109 T C ZCCHC17 Missense_Mutation p.L71P 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 1 32101024 32101024 G A PEF1 Missense_Mutation p.P42S 0.36 tolerated(0.16) unknown(0) TCGA-EE-A2A2-06 1 32682472 32682472 C T TMEM234 Silent p.G135G 0.39 TCGA-EE-A2A2-06 1 32682473 32682473 C T TMEM234 Missense_Mutation p.G135E 0.39 tolerated_low_confidence(1) benign(0.006) TCGA-EE-A2A2-06 1 33487220 33487220 G A AK2 Missense_Mutation p.P102S 0.30 deleterious(0.01) benign(0.164) TCGA-EE-A2A2-06 1 33956860 33956860 C T ZSCAN20 Silent p.F334F 0.44 TCGA-EE-A2A2-06 1 34033255 34033255 C T CSMD2 Missense_Mutation p.G2750D 0.39 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 1 34033256 34033256 C T CSMD2 Missense_Mutation p.G2750S 0.39 deleterious(0) possibly_damaging(0.849) TCGA-EE-A2A2-06 1 34033349 34033349 G A CSMD2 Missense_Mutation p.P2719S 0.23 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A2A2-06 1 34182043 34182043 G A CSMD2 Silent p.I980I 0.38 TCGA-EE-A2A2-06 1 34208909 34208909 C T CSMD2 Silent p.G675G 0.43 TCGA-EE-A2A2-06 1 3431121 3431121 G A MEGF6 Silent p.A282A 0.36 TCGA-EE-A2A2-06 1 3431122 3431122 G A MEGF6 Missense_Mutation p.A282V 0.36 deleterious(0.02) possibly_damaging(0.589) TCGA-EE-A2A2-06 1 34330366 34330366 G A HMGB4 3'UTR 0.54 TCGA-EE-A2A2-06 1 35580522 35580522 C T ZMYM1 Nonsense_Mutation p.R1031* 0.36 TCGA-EE-A2A2-06 1 36929946 36929946 T C MRPS15 5'UTR 0.38 TCGA-EE-A2A2-06 1 38188738 38188738 G A EPHA10 Silent p.V645V 0.36 TCGA-EE-A2A2-06 1 38265300 38265300 T G MANEAL Missense_Mutation p.F267V 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 1 40980611 40980611 T G EXO5 Missense_Mutation p.V132G 0.34 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2A2-06 1 43855557 43855557 C T SZT2 5'Flank 0.38 TCGA-EE-A2A2-06 1 43880764 43880764 G A SZT2 Silent p.Q170Q 0.34 TCGA-EE-A2A2-06 1 44149375 44149375 T A KDM4A Missense_Mutation p.F585L 0.38 tolerated(0.63) benign(0) TCGA-EE-A2A2-06 1 45227596 45227596 G A KIF2C Silent p.T564T 0.36 TCGA-EE-A2A2-06 1 45295599 45295599 G A PTCH2 Missense_Mutation p.P306L 0.40 tolerated(0.26) benign(0.001) TCGA-EE-A2A2-06 1 46034623 46034623 C T AKR1A1 Silent p.I259I 0.39 TCGA-EE-A2A2-06 1 47325399 47325399 G A CYP4Z2P RNA 0.16 TCGA-EE-A2A2-06 1 47351173 47351173 C T CYP4Z2P RNA 0.47 TCGA-EE-A2A2-06 1 54262616 54262616 G C NDC1 Missense_Mutation p.P475R 0.42 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A2A2-06 1 55144429 55144429 G A MROH7 Missense_Mutation p.E651K 0.36 tolerated(0.31) benign(0.234) TCGA-EE-A2A2-06 1 55174699 55174699 C T MROH7 Missense_Mutation p.P1227L 0.37 tolerated(0.07) probably_damaging(0.973) TCGA-EE-A2A2-06 1 57216728 57216728 G A C1orf168 Missense_Mutation p.S459F 0.34 deleterious(0.02) possibly_damaging(0.896) TCGA-EE-A2A2-06 1 57349169 57349169 G A C8A Missense_Mutation p.G224R 0.25 tolerated(0.25) benign(0.009) TCGA-EE-A2A2-06 1 57415385 57415385 G A C8B Missense_Mutation p.S236L 0.34 deleterious(0) benign(0.307) TCGA-EE-A2A2-06 1 57481073 57481073 G A DAB1 Silent p.S309S 0.35 TCGA-EE-A2A2-06 1 60299103 60299103 A C HOOK1 Silent p.A100A 0.42 TCGA-EE-A2A2-06 1 60299104 60299104 C T HOOK1 Missense_Mutation p.L101F 0.42 tolerated(0.7) benign(0.046) TCGA-EE-A2A2-06 1 62503682 62503682 T A INADL Silent p.T1331T 0.30 TCGA-EE-A2A2-06 1 62718736 62718736 C T KANK4 Intron 0.27 TCGA-EE-A2A2-06 1 65130324 65130324 C T CACHD1 Silent p.S695S 0.27 TCGA-EE-A2A2-06 1 6529668 6529668 C T PLEKHG5 Silent p.R702R 0.37 TCGA-EE-A2A2-06 1 6529669 6529669 C T PLEKHG5 Missense_Mutation p.R702K 0.37 tolerated(0.71) benign(0.001) TCGA-EE-A2A2-06 1 6532641 6532641 C T PLEKHG5 Nonsense_Mutation p.W421* 0.37 TCGA-EE-A2A2-06 1 66838170 66838170 C T PDE4B Silent p.L674L 0.40 TCGA-EE-A2A2-06 1 67558636 67558636 G A C1orf141 3'UTR 0.30 TCGA-EE-A2A2-06 1 68955157 68955157 C T DEPDC1 Missense_Mutation p.R150K 0.36 tolerated(1) benign(0) TCGA-EE-A2A2-06 1 75038879 75038879 C T C1orf173 Missense_Mutation p.A839T 0.39 tolerated(0.12) probably_damaging(0.989) TCGA-EE-A2A2-06 1 75038880 75038880 C T C1orf173 Silent p.G838G 0.38 TCGA-EE-A2A2-06 1 75086427 75086427 G A C1orf173 Missense_Mutation p.L331F 0.34 deleterious(0.02) benign(0.111) TCGA-EE-A2A2-06 1 78001592 78001592 C T AK5 Missense_Mutation p.L497F 0.39 deleterious(0.01) benign(0.312) TCGA-EE-A2A2-06 1 7870507 7870507 C T PER3 Nonsense_Mutation p.Q460* 0.35 TCGA-EE-A2A2-06 1 78958572 78958572 C T PTGFR Silent p.I48I 0.35 TCGA-EE-A2A2-06 1 79385897 79385897 G A ELTD1 Missense_Mutation p.L478F 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A2-06 1 87101784 87101784 G A RP4-651E10.4 Intron 0.35 TCGA-EE-A2A2-06 1 89522545 89522545 C T GBP1 Missense_Mutation p.E383K 0.33 tolerated(0.85) benign(0.002) TCGA-EE-A2A2-06 1 89618368 89618368 C T GBP7 Silent p.Q137Q 0.46 TCGA-EE-A2A2-06 1 89655736 89655736 G A GBP4 Silent p.F394F 0.41 TCGA-EE-A2A2-06 1 90048542 90048542 G A LRRC8B Silent p.E111E 0.29 TCGA-EE-A2A2-06 1 92195501 92195501 C T TGFBR3 Missense_Mutation p.G200R 0.46 tolerated(0.06) benign(0.019) TCGA-EE-A2A2-06 1 94049648 94049648 G A BCAR3 Silent p.A320A 0.37 TCGA-EE-A2A2-06 1 94337785 94337785 C G DNTTIP2 Missense_Mutation p.R637P 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 1 94486960 94486960 C T ABCA4 Nonsense_Mutation p.W1618* 0.37 TCGA-EE-A2A2-06 1 94955483 94955483 C T ABCD3 Missense_Mutation p.P425L 0.25 tolerated(0.22) benign(0.001) TCGA-EE-A2A2-06 1 97981290 97981290 G A DPYD Missense_Mutation p.L578F 0.28 deleterious(0) possibly_damaging(0.764) TCGA-EE-A2A2-06 1 97981408 97981408 G A DPYD Silent p.A538A 0.32 TCGA-EE-A2A2-06 1 99772125 99772125 C T LPPR4 Silent p.P617P 0.32 TCGA-EE-A2A2-06 20 10273863 10273863 A C SNAP25 Missense_Mutation p.E73A 0.27 deleterious(0.04) benign(0.153) TCGA-EE-A2A2-06 20 12990012 12990012 G A SPTLC3 Missense_Mutation p.G33R 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 20 18295778 18295778 C T ZNF133 Missense_Mutation p.P94S 0.35 tolerated(0.08) benign(0.075) TCGA-EE-A2A2-06 20 20278924 20278924 G A C20orf26 Missense_Mutation p.E1106K 0.35 tolerated(0.73) benign(0.002) TCGA-EE-A2A2-06 20 2315831 2315831 G A TGM3 Missense_Mutation p.R571Q 0.37 tolerated(0.41) benign(0.385) TCGA-EE-A2A2-06 20 23472502 23472502 C T CST8 Silent p.F66F 0.35 TCGA-EE-A2A2-06 20 2411208 2411208 G A TGM6 Missense_Mutation p.E599K 0.38 deleterious(0.04) probably_damaging(0.968) TCGA-EE-A2A2-06 20 2443366 2443366 G A SNRPB Missense_Mutation p.P201S 0.37 tolerated_low_confidence(0.68) unknown(0) TCGA-EE-A2A2-06 20 2636010 2636010 C T NOP56 Silent p.I203I 0.39 TCGA-EE-A2A2-06 20 2778928 2778928 C T CPXM1 Missense_Mutation p.E154K 0.42 tolerated(0.11) benign(0.326) TCGA-EE-A2A2-06 20 29961059 29961059 C T DEFB118 3'UTR 0.32 TCGA-EE-A2A2-06 20 30064251 30064251 G A REM1 Translation_Start_Site p.M1? 0.36 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2A2-06 20 30436629 30436629 C T FOXS1 5'Flank 0.31 TCGA-EE-A2A2-06 20 30450449 30450449 G A DUSP15 Silent p.A120A 0.37 TCGA-EE-A2A2-06 20 30803152 30803152 G A POFUT1 Missense_Mutation p.M109I 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2A2-06 20 31024358 31024358 C T ASXL1 Silent p.S1281S 0.39 TCGA-EE-A2A2-06 20 31643346 31643346 C T BPIFB3 Silent p.L39L 0.32 TCGA-EE-A2A2-06 20 31828158 31828158 C T BPIFA1 Missense_Mutation p.S183F 0.33 deleterious(0.03) benign(0.208) TCGA-EE-A2A2-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.37 TCGA-EE-A2A2-06 20 34129831 34129831 T G ERGIC3 5'UTR 0.40 TCGA-EE-A2A2-06 20 34505530 34505530 C T PHF20 Silent p.F650F 0.44 TCGA-EE-A2A2-06 20 34761873 34761873 A G EPB41L1 Silent p.E58E 0.38 TCGA-EE-A2A2-06 20 35668680 35668680 G A RBL1 Silent p.F593F 0.38 TCGA-EE-A2A2-06 20 36022652 36022652 C T SRC Silent p.F175F 0.34 TCGA-EE-A2A2-06 20 37168551 37168551 C T RALGAPB Nonsense_Mutation p.Q838* 0.28 TCGA-EE-A2A2-06 20 3725616 3725616 G A HSPA12B Missense_Mutation p.E112K 0.35 deleterious(0.02) benign(0.267) TCGA-EE-A2A2-06 20 3740717 3740717 G A C20orf27 Missense_Mutation p.P11S 0.36 tolerated_low_confidence(0.36) benign(0.235) TCGA-EE-A2A2-06 20 37547011 37547011 G A PPP1R16B Nonsense_Mutation p.W469* 0.37 TCGA-EE-A2A2-06 20 39317511 39317511 G A MAFB 5'UTR 0.48 TCGA-EE-A2A2-06 20 39831811 39831811 G A ZHX3 Silent p.V582V 0.37 TCGA-EE-A2A2-06 20 40079712 40079712 C T CHD6 Missense_Mutation p.G1186E 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2A2-06 20 43257749 43257749 C A ADA Missense_Mutation p.D53Y 0.35 deleterious(0.02) possibly_damaging(0.683) TCGA-EE-A2A2-06 20 44515309 44515309 C T SPATA25 Silent p.L177L 0.39 TCGA-EE-A2A2-06 20 44815301 44815301 C T CDH22 Missense_Mutation p.G530D 0.41 tolerated(0.32) benign(0.343) TCGA-EE-A2A2-06 20 45353822 45353822 C T SLC2A10 Silent p.F49F 0.35 TCGA-EE-A2A2-06 20 45362569 45362569 C T SLC2A10 3'UTR 0.35 TCGA-EE-A2A2-06 20 47991500 47991500 G A KCNB1 Silent p.I199I 0.29 TCGA-EE-A2A2-06 20 50406809 50406809 G A SALL4 Missense_Mutation p.P738L 0.35 tolerated(0.34) benign(0.001) TCGA-EE-A2A2-06 20 50715040 50715040 G A ZFP64 Missense_Mutation p.P87S 0.39 tolerated(0.26) benign(0.018) TCGA-EE-A2A2-06 20 51871597 51871597 G A TSHZ2 Missense_Mutation p.G534R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 20 5559205 5559205 G A GPCPD1 Missense_Mutation p.P176S 0.35 tolerated(0.23) benign(0.282) TCGA-EE-A2A2-06 20 57767199 57767199 G A ZNF831 Silent p.G375G 0.40 TCGA-EE-A2A2-06 20 58475246 58475246 A T SYCP2 Missense_Mutation p.S451T 0.37 tolerated(0.47) benign(0.003) TCGA-EE-A2A2-06 20 60485496 60485496 G A CDH4 Missense_Mutation p.E403K 0.39 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 20 60737912 60737912 G A SS18L1 Missense_Mutation p.G161S 0.34 tolerated_low_confidence(0.94) benign(0.006) TCGA-EE-A2A2-06 20 60737913 60737913 G A SS18L1 Missense_Mutation p.G161D 0.34 deleterious_low_confidence(0) benign(0.146) TCGA-EE-A2A2-06 20 62039804 62039804 G A KCNQ2 Missense_Mutation p.P617S 0.39 deleterious(0.03) benign(0.219) TCGA-EE-A2A2-06 20 62039805 62039805 G A KCNQ2 Silent p.D616D 0.38 TCGA-EE-A2A2-06 20 62059752 62059752 C T KCNQ2 Silent p.R395R 0.32 TCGA-EE-A2A2-06 20 62737461 62737461 C T NPBWR2 Missense_Mutation p.V242M 0.36 tolerated(0.61) benign(0.016) TCGA-EE-A2A2-06 20 7886933 7886933 C T HAO1 Missense_Mutation p.E197K 0.40 tolerated(0.85) benign(0.001) TCGA-EE-A2A2-06 20 7963024 7963024 G A TMX4 Silent p.T308T 0.31 TCGA-EE-A2A2-06 20 7963025 7963025 G A TMX4 Missense_Mutation p.T308I 0.34 tolerated(0.07) benign(0.008) TCGA-EE-A2A2-06 20 9318659 9318659 G A PLCB4 Missense_Mutation p.G57E 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 20 9497006 9497006 G C LAMP5 Missense_Mutation p.S158T 0.37 tolerated(0.24) benign(0.003) TCGA-EE-A2A2-06 21 11029651 11029651 C T BAGE2 RNA 0.19 TCGA-EE-A2A2-06 21 11049480 11049480 C T BAGE2 RNA 0.08 TCGA-EE-A2A2-06 21 19628897 19628897 C T CHODL Nonsense_Mutation p.R51* 0.65 TCGA-EE-A2A2-06 21 32582404 32582404 C T TIAM1 Missense_Mutation p.R782Q 0.58 tolerated(0.64) benign(0.012) TCGA-EE-A2A2-06 21 33873794 33873794 A C EVA1C Missense_Mutation p.D283A 0.58 deleterious(0) benign(0.371) TCGA-EE-A2A2-06 21 41465770 41465770 G A DSCAM Missense_Mutation p.S1243L 0.50 tolerated(0.71) benign(0.002) TCGA-EE-A2A2-06 21 43187172 43187172 G A RIPK4 Silent p.A10A 0.63 TCGA-EE-A2A2-06 21 43256640 43256640 A C PRDM15 Missense_Mutation p.C740G 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 21 44488672 44488672 G A CBS Missense_Mutation p.P88L 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 21 46011854 46011854 G A KRTAP10-6 Missense_Mutation p.S171L 0.61 tolerated(0.46) unknown(0) TCGA-EE-A2A2-06 21 46323291 46323291 G A ITGB2 Missense_Mutation p.S163F 0.64 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2A2-06 21 46912603 46912603 C T COL18A1 Silent p.G910G 0.66 TCGA-EE-A2A2-06 21 46931086 46931086 C T COL18A1 Missense_Mutation p.P1432L 0.57 benign(0.095) TCGA-EE-A2A2-06 21 47333947 47333947 C T PCBP3 Intron 0.71 TCGA-EE-A2A2-06 22 16287257 16287257 T G POTEH Missense_Mutation p.K210T 0.12 deleterious(0.01) possibly_damaging(0.595) TCGA-EE-A2A2-06 22 17073328 17073328 G A CCT8L2 Missense_Mutation p.A38V 0.35 tolerated(0.14) benign(0.071) TCGA-EE-A2A2-06 22 17578741 17578741 C T IL17RA Missense_Mutation p.P73L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 22 18028461 18028461 G A CECR2 Missense_Mutation p.G1141S 0.33 tolerated(0.14) benign(0.04) TCGA-EE-A2A2-06 22 18368808 18368808 G A MICAL3 Missense_Mutation p.P693S 0.39 benign(0.008) TCGA-EE-A2A2-06 22 18769738 18769738 C T GGT3P RNA 0.21 TCGA-EE-A2A2-06 22 19170972 19170972 G T CLTCL1 Silent p.A1586A 0.34 TCGA-EE-A2A2-06 22 19951785 19951785 G A COMT Nonsense_Mutation p.W193* 0.38 TCGA-EE-A2A2-06 22 20729796 20729796 C T USP41 Silent p.Q128Q 0.33 TCGA-EE-A2A2-06 22 21470387 21470387 G T KB-1592A4.15 RNA 0.19 TCGA-EE-A2A2-06 22 21800779 21800779 C T HIC2 Missense_Mutation p.P532L 0.36 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2A2-06 22 23406136 23406136 G A RTDR1 Silent p.L199L 0.33 TCGA-EE-A2A2-06 22 25294154 25294154 C T SGSM1 Silent p.P801P 0.31 TCGA-EE-A2A2-06 22 25315917 25315917 G A SGSM1 Silent p.L1105L 0.36 TCGA-EE-A2A2-06 22 25597350 25597350 G A CRYBB3 5'UTR 0.34 TCGA-EE-A2A2-06 22 26118441 26118441 C T ADRBK2 3'UTR 0.28 TCGA-EE-A2A2-06 22 26159234 26159234 C T MYO18B Missense_Mutation p.P26S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 22 26423107 26423107 C T MYO18B Silent p.S2389S 0.37 TCGA-EE-A2A2-06 22 26688560 26688560 G A SEZ6L Missense_Mutation p.D95N 0.35 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A2A2-06 22 26709835 26709835 G A SEZ6L Missense_Mutation p.G661E 0.36 tolerated(0.91) possibly_damaging(0.629) TCGA-EE-A2A2-06 22 26936874 26936874 C T TPST2 Silent p.L241L 0.29 TCGA-EE-A2A2-06 22 27019245 27019245 C T CRYBA4 Silent p.F29F 0.37 TCGA-EE-A2A2-06 22 28196393 28196393 G A MN1 Missense_Mutation p.P47S 0.37 benign(0.303) TCGA-EE-A2A2-06 22 30127120 30127120 G A ZMAT5 3'UTR 0.37 TCGA-EE-A2A2-06 22 30489925 30489925 C T HORMAD2 5'UTR 0.40 TCGA-EE-A2A2-06 22 31535838 31535838 G A PLA2G3 Missense_Mutation p.S168F 0.43 tolerated(0.48) benign(0.323) TCGA-EE-A2A2-06 22 32270373 32270373 G A DEPDC5 Missense_Mutation p.M1217I 0.33 tolerated(0.6) benign(0.006) TCGA-EE-A2A2-06 22 32843213 32843213 G A BPIFC Silent p.F120F 0.30 TCGA-EE-A2A2-06 22 32875101 32875101 A G FBXO7 Missense_Mutation p.N86D 0.35 tolerated(0.58) possibly_damaging(0.48) TCGA-EE-A2A2-06 22 33402357 33402357 G A SYN3 Silent p.I97I 0.39 TCGA-EE-A2A2-06 22 35660805 35660805 G A HMGXB4 Missense_Mutation p.E142K 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.532) TCGA-EE-A2A2-06 22 36597776 36597776 C T APOL4 Intron 0.33 TCGA-EE-A2A2-06 22 37334334 37334334 G A CSF2RB Silent p.L828L 0.35 TCGA-EE-A2A2-06 22 37865980 37865980 C T MFNG 3'UTR 0.23 TCGA-EE-A2A2-06 22 38894509 38894509 G A DDX17 Missense_Mutation p.P203L 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 22 39712907 39712907 G A RPL3 Intron 0.37 TCGA-EE-A2A2-06 22 39884653 39884653 C T MGAT3 Missense_Mutation p.S434F 0.40 deleterious(0) probably_damaging(0.978) TCGA-EE-A2A2-06 22 39884729 39884729 C T MGAT3 Silent p.I459I 0.39 TCGA-EE-A2A2-06 22 39996602 39996602 G A CACNA1I Silent p.K142K 0.39 TCGA-EE-A2A2-06 22 42473325 42473325 C T FAM109B Missense_Mutation p.H10Y 0.34 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A2A2-06 22 42981923 42981923 C T POLDIP3 Silent p.R380R 0.39 TCGA-EE-A2A2-06 22 42981924 42981924 C T POLDIP3 Missense_Mutation p.R380K 0.38 tolerated(0.42) possibly_damaging(0.55) TCGA-EE-A2A2-06 22 43950818 43950818 C T EFCAB6 Silent p.T1193T 0.39 TCGA-EE-A2A2-06 22 44234799 44234799 C T SULT4A1 Missense_Mutation p.M152I 0.37 tolerated(0.09) benign(0.18) TCGA-EE-A2A2-06 22 47085936 47085936 G A CERK Silent p.S498S 0.39 TCGA-EE-A2A2-06 22 50720043 50720043 G A PLXNB2 Silent p.P1158P 0.36 TCGA-EE-A2A2-06 22 50927488 50927488 C T MIOX Missense_Mutation p.T143I 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A2-06 2 10101458 10101458 C T GRHL1 Missense_Mutation p.R188W 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A2A2-06 2 102407207 102407207 T A MAP4K4 Nonsense_Mutation p.L50* 0.40 TCGA-EE-A2A2-06 2 102792979 102792979 G A IL1R1 Silent p.L490L 0.35 TCGA-EE-A2A2-06 2 102792980 102792980 G A IL1R1 Missense_Mutation p.E491K 0.35 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2A2-06 2 102965684 102965684 G A IL1RL1 Silent p.G421G 0.39 TCGA-EE-A2A2-06 2 103414377 103414377 C T TMEM182 Silent p.I129I 0.39 TCGA-EE-A2A2-06 2 106710441 106710441 C A UXS1 3'UTR 0.41 TCGA-EE-A2A2-06 2 107007411 107007411 G A PLGLA RNA 0.43 TCGA-EE-A2A2-06 2 108994820 108994820 T C SULT1C4 Silent p.F9F 0.41 TCGA-EE-A2A2-06 2 109545771 109545771 G A EDAR Missense_Mutation p.S80F 0.36 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A2-06 2 111881413 111881413 G A BCL2L11 Missense_Mutation p.G31R 0.35 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A2-06 2 111881414 111881414 G A BCL2L11 Missense_Mutation p.G31E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 2 112705031 112705031 A G MERTK Missense_Mutation p.N215S 0.44 tolerated(0.14) probably_damaging(0.911) TCGA-EE-A2A2-06 2 116497419 116497419 C T DPP10 Missense_Mutation p.R272W 0.45 tolerated(0.18) benign(0.005) TCGA-EE-A2A2-06 2 11758670 11758670 C T GREB1 Silent p.S1223S 0.41 TCGA-EE-A2A2-06 2 11913802 11913802 C T LPIN1 Missense_Mutation p.S267F 0.37 deleterious(0.03) benign(0.007) TCGA-EE-A2A2-06 2 11922502 11922502 T A LPIN1 Missense_Mutation p.F427Y 0.44 tolerated(1) benign(0.162) TCGA-EE-A2A2-06 2 119735476 119735476 G A MARCO Missense_Mutation p.G244E 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2A2-06 2 120005746 120005746 C T STEAP3 Silent p.A338A 0.33 TCGA-EE-A2A2-06 2 121748112 121748112 C T GLI2 Missense_Mutation p.S1541F 0.37 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 2 122104659 122104659 G A CLASP1 Silent p.I1495I 0.38 TCGA-EE-A2A2-06 2 128051731 128051731 C T ERCC3 5'UTR 0.40 TCGA-EE-A2A2-06 2 128366430 128366430 G A MYO7B Missense_Mutation p.G931S 0.35 tolerated(0.09) benign(0.13) TCGA-EE-A2A2-06 2 128381890 128381890 G A MYO7B Missense_Mutation p.E1322K 0.42 tolerated(0.08) benign(0.007) TCGA-EE-A2A2-06 2 128467377 128467377 C T WDR33 Missense_Mutation p.R1121K 0.35 deleterious_low_confidence(0.01) benign(0.364) TCGA-EE-A2A2-06 2 130898785 130898785 G A CCDC74B Missense_Mutation p.P210L 0.27 deleterious(0.05) benign(0.026) TCGA-EE-A2A2-06 2 132289321 132289321 C T CCDC74A Missense_Mutation p.P210L 0.11 deleterious(0.03) benign(0.155) TCGA-EE-A2A2-06 2 141128855 141128855 C T LRP1B Splice_Site p.X3590_splice 0.40 TCGA-EE-A2A2-06 2 149803410 149803410 C T KIF5C Intron 0.27 TCGA-EE-A2A2-06 2 152424922 152424922 G A NEB Missense_Mutation p.R5882W 0.34 probably_damaging(0.995) TCGA-EE-A2A2-06 2 152424923 152424923 G A NEB Silent p.Y5881Y 0.33 TCGA-EE-A2A2-06 2 152474840 152474840 C T NEB Silent p.T3675T 0.33 TCGA-EE-A2A2-06 2 15307436 15307436 G A NBAS Silent p.S2284S 0.43 TCGA-EE-A2A2-06 2 15319169 15319169 C A NBAS Missense_Mutation p.E2261D 0.44 tolerated(0.19) possibly_damaging(0.843) TCGA-EE-A2A2-06 2 154996960 154996960 C T GALNT13 Missense_Mutation p.L85F 0.34 tolerated(0.12) possibly_damaging(0.482) TCGA-EE-A2A2-06 2 155265592 155265592 C T GALNT13 Nonsense_Mutation p.Q465* 0.28 TCGA-EE-A2A2-06 2 155566185 155566185 G A KCNJ3 Missense_Mutation p.G258E 0.35 deleterious(0.04) probably_damaging(1) TCGA-EE-A2A2-06 2 159519537 159519537 C T PKP4 Silent p.D780D 0.40 TCGA-EE-A2A2-06 2 160688299 160688299 T G LY75-CD302 Splice_Site p.X1281_splice 0.28 TCGA-EE-A2A2-06 2 160706970 160706971 - AGAAAATGTGAGAGACACGGGTTTGATCTTC LY75-CD302 Frame_Shift_Ins p.Q975Kfs*31 0.11 TCGA-EE-A2A2-06 2 160901443 160901443 G A PLA2R1 Missense_Mutation p.S112F 0.33 tolerated(0.08) benign(0.071) TCGA-EE-A2A2-06 2 163031387 163031387 C T FAP Nonsense_Mutation p.W653* 0.34 TCGA-EE-A2A2-06 2 163393558 163393558 G A KCNH7 Missense_Mutation p.P114S 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 2 163693197 163693197 C T KCNH7 Missense_Mutation p.G53S 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A2-06 2 167084228 167084228 A T SCN9A Silent p.T1393T 0.35 TCGA-EE-A2A2-06 2 167304163 167304163 G A SCN7A Missense_Mutation p.S449L 0.38 deleterious(0.02) benign(0.049) TCGA-EE-A2A2-06 2 167327137 167327137 G A SCN7A Missense_Mutation p.P218S 0.38 tolerated(1) benign(0.231) TCGA-EE-A2A2-06 2 168067285 168067285 A C XIRP2 Missense_Mutation p.E201D 0.40 benign(0.176) TCGA-EE-A2A2-06 2 169792784 169792784 C T ABCB11 Missense_Mutation p.G924R 0.28 deleterious(0.01) possibly_damaging(0.558) TCGA-EE-A2A2-06 2 175264816 175264816 G A SCRN3 Missense_Mutation p.G109E 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 2 178095822 178095822 C T NFE2L2 Silent p.R503R 0.31 TCGA-EE-A2A2-06 2 179478906 179478906 C T TTN Silent p.K16406K 0.38 TCGA-EE-A2A2-06 2 179530116 179530116 G A TTN Missense_Mutation p.P12011S 0.35 TCGA-EE-A2A2-06 2 179594198 179594198 C T TTN Missense_Mutation p.E6229K 0.37 TCGA-EE-A2A2-06 2 179595694 179595694 C T TTN Missense_Mutation p.D5900N 0.38 TCGA-EE-A2A2-06 2 179596677 179596677 T C TTN Missense_Mutation p.E5642G 0.49 TCGA-EE-A2A2-06 2 179606352 179606352 A T TTN Missense_Mutation p.F3870I 0.42 TCGA-EE-A2A2-06 2 179610386 179610386 C T TTN Intron 0.25 TCGA-EE-A2A2-06 2 179664226 179664226 G A TTN Missense_Mutation p.P301L 0.30 TCGA-EE-A2A2-06 2 180016105 180016105 G A SESTD1 Missense_Mutation p.S128F 0.38 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2A2-06 2 185802647 185802647 T C ZNF804A Silent p.L842L 0.43 TCGA-EE-A2A2-06 2 185803417 185803417 C T ZNF804A Silent p.I1098I 0.35 TCGA-EE-A2A2-06 2 186670661 186670661 C T FSIP2 Missense_Mutation p.T5632I 0.19 benign(0.056) TCGA-EE-A2A2-06 2 190530903 190530903 C T ASNSD1 Silent p.F15F 0.38 TCGA-EE-A2A2-06 2 190922180 190922180 C T MSTN Missense_Mutation p.G311E 0.40 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A2A2-06 2 191844533 191844533 G A STAT1 Silent p.L564L 0.45 TCGA-EE-A2A2-06 2 191874645 191874645 C G STAT1 Missense_Mutation p.E29Q 0.39 deleterious(0.01) possibly_damaging(0.809) TCGA-EE-A2A2-06 2 192815177 192815177 C T TMEFF2 Intron 0.43 TCGA-EE-A2A2-06 2 192815178 192815178 C T TMEFF2 Intron 0.43 TCGA-EE-A2A2-06 2 196759768 196759768 C T DNAH7 Missense_Mutation p.E1610K 0.40 deleterious(0.04) benign(0.389) TCGA-EE-A2A2-06 2 197298102 197298102 T C HECW2 Missense_Mutation p.N16D 0.39 tolerated_low_confidence(0.26) benign(0.081) TCGA-EE-A2A2-06 2 1983293 1983293 C T MYT1L Missense_Mutation p.S30N 0.27 deleterious(0.02) unknown(0) TCGA-EE-A2A2-06 2 202501564 202501564 G A TMEM237 Missense_Mutation p.P61S 0.37 tolerated(0.32) benign(0.016) TCGA-EE-A2A2-06 2 203242119 203242119 G A BMPR2 5'UTR 0.40 TCGA-EE-A2A2-06 2 206659800 206659800 C T NRP2 3'UTR 0.39 TCGA-EE-A2A2-06 2 206869173 206869173 G A INO80D Silent p.A1001A 0.26 TCGA-EE-A2A2-06 2 207171914 207171914 G A ZDBF2 Missense_Mutation p.E888K 0.40 tolerated(0.11) possibly_damaging(0.692) TCGA-EE-A2A2-06 2 207175364 207175364 G A ZDBF2 Missense_Mutation p.D2038N 0.43 tolerated(0.47) possibly_damaging(0.539) TCGA-EE-A2A2-06 2 207527786 207527786 G C DYTN Missense_Mutation p.P492A 0.30 deleterious(0.04) benign(0.342) TCGA-EE-A2A2-06 2 218924969 218924969 C T CXCR2P1 RNA 0.37 TCGA-EE-A2A2-06 2 219028870 219028870 C T CXCR1 3'UTR 0.35 TCGA-EE-A2A2-06 2 219508346 219508346 G A ZNF142 Missense_Mutation p.P965S 0.41 tolerated(0.21) possibly_damaging(0.641) TCGA-EE-A2A2-06 2 219696074 219696074 C T PRKAG3 Missense_Mutation p.G20S 0.36 deleterious_low_confidence(0.01) benign(0.083) TCGA-EE-A2A2-06 2 219696075 219696075 C T PRKAG3 Silent p.G19G 0.35 TCGA-EE-A2A2-06 2 219875354 219875354 G A CCDC108 Missense_Mutation p.H1408Y 0.35 tolerated(0.17) benign(0.012) TCGA-EE-A2A2-06 2 219875355 219875355 G A CCDC108 Silent p.P1407P 0.36 TCGA-EE-A2A2-06 2 219878241 219878241 C T CCDC108 Silent p.L1282L 0.38 TCGA-EE-A2A2-06 2 220111520 220111520 C G STK16 Missense_Mutation p.N76K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 2 220166329 220166329 C T PTPRN Silent p.K369K 0.40 TCGA-EE-A2A2-06 2 220355197 220355197 C T SPEG Silent p.I2996I 0.42 TCGA-EE-A2A2-06 2 220412289 220412289 C T TMEM198 Silent p.I76I 0.34 TCGA-EE-A2A2-06 2 220412290 220412290 T G TMEM198 Missense_Mutation p.F77V 0.34 deleterious(0) possibly_damaging(0.637) TCGA-EE-A2A2-06 2 220478553 220478553 G A STK11IP Missense_Mutation p.G884S 0.31 tolerated(0.53) possibly_damaging(0.539) TCGA-EE-A2A2-06 2 220478554 220478554 G A STK11IP Missense_Mutation p.G884D 0.32 tolerated(0.16) possibly_damaging(0.886) TCGA-EE-A2A2-06 2 226447029 226447029 C T NYAP2 Missense_Mutation p.P299L 0.33 deleterious(0.01) possibly_damaging(0.64) TCGA-EE-A2A2-06 2 228389553 228389553 G A AGFG1 Missense_Mutation p.D206N 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 2 228855765 228855765 C T SPHKAP Missense_Mutation p.G1637E 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 2 228883733 228883733 C T SPHKAP Missense_Mutation p.E613K 0.46 tolerated(0.24) benign(0.022) TCGA-EE-A2A2-06 2 229890218 229890218 C T PID1 3'UTR 0.22 TCGA-EE-A2A2-06 2 231222673 231222673 A T SP140L Missense_Mutation p.K87N 0.41 deleterious(0.01) benign(0.242) TCGA-EE-A2A2-06 2 231253283 231253283 G A SP140L Missense_Mutation p.R265K 0.21 tolerated(0.22) possibly_damaging(0.664) TCGA-EE-A2A2-06 2 231775515 231775515 C T GPR55 Missense_Mutation p.D55N 0.36 tolerated(0.17) benign(0.008) TCGA-EE-A2A2-06 2 232378304 232378304 G A LINC00471 RNA 0.41 TCGA-EE-A2A2-06 2 233272555 233272555 G A ALPPL2 Missense_Mutation p.G159E 0.37 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 2 233897453 233897453 C T NEU2 Silent p.A24A 0.37 TCGA-EE-A2A2-06 2 235962430 235962430 C T SH3BP4 Silent p.S954S 0.36 TCGA-EE-A2A2-06 2 240982270 240982270 C T PRR21 Missense_Mutation p.G44S 0.40 tolerated_low_confidence(0.85) benign(0.317) TCGA-EE-A2A2-06 2 241656729 241656729 G A KIF1A 3'UTR 0.42 TCGA-EE-A2A2-06 2 241728671 241728671 G A KIF1A Silent p.S55S 0.34 TCGA-EE-A2A2-06 2 241728672 241728672 G A KIF1A Missense_Mutation p.S55F 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 2 241813426 241813426 G A AGXT Silent p.K209K 0.31 TCGA-EE-A2A2-06 2 26477303 26477303 A T HADHB Nonsense_Mutation p.R24* 0.28 TCGA-EE-A2A2-06 2 26477304 26477304 G A HADHB Missense_Mutation p.R24K 0.29 tolerated_low_confidence(0.14) benign(0.304) TCGA-EE-A2A2-06 2 26706495 26706495 C T OTOF Silent p.G409G 0.31 TCGA-EE-A2A2-06 2 26706496 26706496 C T OTOF Missense_Mutation p.G409E 0.31 deleterious(0) probably_damaging(0.982) TCGA-EE-A2A2-06 2 27306762 27306762 C T EMILIN1 Silent p.L775L 0.44 TCGA-EE-A2A2-06 2 27449415 27449415 C T CAD Missense_Mutation p.A685V 0.35 deleterious(0.02) possibly_damaging(0.451) TCGA-EE-A2A2-06 2 29240746 29240746 G A FAM179A Silent p.R428R 0.36 TCGA-EE-A2A2-06 2 30966439 30966439 G A CAPN13 Missense_Mutation p.R419W 0.38 tolerated(0.2) benign(0.002) TCGA-EE-A2A2-06 2 31591480 31591480 G A XDH Missense_Mutation p.P676L 0.33 tolerated(0.26) benign(0.164) TCGA-EE-A2A2-06 2 31604542 31604542 G A XDH Silent p.P363P 0.35 TCGA-EE-A2A2-06 2 32361943 32361943 T C SPAST Intron 0.40 TCGA-EE-A2A2-06 2 32475921 32475921 G A NLRC4 Missense_Mutation p.P338S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 2 32715118 32715118 T C BIRC6 Silent p.T2702T 0.47 TCGA-EE-A2A2-06 2 3504605 3504605 G A ADI1 Missense_Mutation p.R134C 0.36 deleterious(0.02) possibly_damaging(0.686) TCGA-EE-A2A2-06 2 36982174 36982174 G A VIT Nonsense_Mutation p.W129* 0.23 TCGA-EE-A2A2-06 2 37105106 37105106 A T STRN Silent p.L417L 0.37 TCGA-EE-A2A2-06 2 38903167 38903167 G A GALM Missense_Mutation p.E102K 0.35 deleterious(0.03) benign(0.015) TCGA-EE-A2A2-06 2 39095502 39095502 C T DHX57 Missense_Mutation p.G16R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A2-06 2 42284374 42284374 C T PKDCC Silent p.I412I 0.36 TCGA-EE-A2A2-06 2 48692631 48692631 G - PPP1R21 Splice_Site p.X250_splice 0.20 TCGA-EE-A2A2-06 2 50699459 50699459 C T NRXN1 Missense_Mutation p.G1114E 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A2-06 2 50780084 50780084 C T NRXN1 Missense_Mutation p.G507E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 2 61413791 61413791 T A AHSA2 Missense_Mutation p.L95Q 0.38 tolerated(0.54) benign(0.03) TCGA-EE-A2A2-06 2 70890433 70890433 C T ADD2 3'UTR 0.36 TCGA-EE-A2A2-06 2 71780260 71780260 C T DYSF Silent p.F642F 0.35 TCGA-EE-A2A2-06 2 71886052 71886052 C T DYSF Silent p.P1600P 0.35 TCGA-EE-A2A2-06 2 73675293 73675293 C T ALMS1 Silent p.L546L 0.33 TCGA-EE-A2A2-06 2 74042650 74042650 G A C2orf78 Missense_Mutation p.G434R 0.41 deleterious(0.02) possibly_damaging(0.885) TCGA-EE-A2A2-06 2 74710166 74710166 C T CCDC142 5'Flank 0.41 TCGA-EE-A2A2-06 2 74710167 74710167 C T CCDC142 5'Flank 0.42 TCGA-EE-A2A2-06 2 74842098 74842098 G A M1AP Missense_Mutation p.S140F 0.40 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2A2-06 2 75929358 75929358 G A GCFC2 Nonsense_Mutation p.Q196* 0.39 TCGA-EE-A2A2-06 2 75933774 75933774 G A GCFC2 Missense_Mutation p.S90F 0.37 deleterious(0) possibly_damaging(0.653) TCGA-EE-A2A2-06 2 79313493 79313493 C T REG1B Silent p.K107K 0.26 TCGA-EE-A2A2-06 2 80875001 80875001 G A CTNNA2 3'UTR 0.43 TCGA-EE-A2A2-06 2 8871126 8871126 G A KIDINS220 Silent p.P1680P 0.28 TCGA-EE-A2A2-06 2 8873729 8873729 G A KIDINS220 Missense_Mutation p.P1300S 0.36 tolerated_low_confidence(0.84) benign(0.002) TCGA-EE-A2A2-06 2 88874621 88874621 G A EIF2AK3 Missense_Mutation p.P794S 0.42 tolerated(0.44) benign(0.003) TCGA-EE-A2A2-06 2 89196846 89196846 C T IGKV5-2 Silent p.L12L 0.29 TCGA-EE-A2A2-06 2 89521256 89521256 C T IGKV2-28 Missense_Mutation p.D95N 0.47 deleterious(0.01) benign(0.195) TCGA-EE-A2A2-06 2 90199113 90199113 G A IGKV1D-12 Missense_Mutation p.D92N 0.32 deleterious(0.03) benign(0.166) TCGA-EE-A2A2-06 2 95537595 95537595 G A TEKT4 Missense_Mutation p.V91M 0.35 deleterious(0) possibly_damaging(0.707) TCGA-EE-A2A2-06 2 98354343 98354343 G A ZAP70 Missense_Mutation p.G536S 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 2 98354344 98354344 G A ZAP70 Missense_Mutation p.G536D 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 2 98920243 98920243 C T VWA3B Missense_Mutation p.P1167S 0.31 tolerated(0.08) benign(0.143) TCGA-EE-A2A2-06 3 100566478 100566478 G A ABI3BP Missense_Mutation p.S497F 0.29 deleterious(0.02) benign(0.352) TCGA-EE-A2A2-06 3 10280488 10280488 C T IRAK2 Silent p.L510L 0.40 TCGA-EE-A2A2-06 3 10280489 10280489 C T IRAK2 Missense_Mutation p.P511S 0.40 tolerated(0.23) benign(0.004) TCGA-EE-A2A2-06 3 10370570 10370570 C T ATP2B2 Silent p.T1220T 0.36 TCGA-EE-A2A2-06 3 108117529 108117529 T G MYH15 Missense_Mutation p.E1716D 0.37 tolerated(0.06) benign(0.004) TCGA-EE-A2A2-06 3 108182072 108182072 C T MYH15 Missense_Mutation p.G604S 0.25 deleterious(0.01) benign(0.243) TCGA-EE-A2A2-06 3 108677820 108677820 C T MORC1 Missense_Mutation p.E983K 0.24 tolerated_low_confidence(0.19) benign(0.001) TCGA-EE-A2A2-06 3 113679645 113679645 G A ZDHHC23 3'UTR 0.34 TCGA-EE-A2A2-06 3 119133721 119133721 G A ARHGAP31 Missense_Mutation p.R982K 0.41 tolerated(0.65) benign(0.005) TCGA-EE-A2A2-06 3 119331934 119331934 C T PLA1A Silent p.L211L 0.38 TCGA-EE-A2A2-06 3 119466063 119466063 G A MAATS1 Silent p.E668E 0.36 TCGA-EE-A2A2-06 3 119900021 119900021 C T GPR156 Missense_Mutation p.G295E 0.31 deleterious(0) probably_damaging(0.965) TCGA-EE-A2A2-06 3 120360505 120360505 C T HGD Silent p.G270G 0.29 TCGA-EE-A2A2-06 3 120394643 120394643 C T HGD Missense_Mutation p.G28E 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2A2-06 3 120394644 120394644 C T HGD Missense_Mutation p.G28R 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2A2-06 3 121126317 121126317 C T STXBP5L Silent p.L963L 0.58 TCGA-EE-A2A2-06 3 121707240 121707240 G A ILDR1 Missense_Mutation p.H539Y 0.41 tolerated(0.06) benign(0.001) TCGA-EE-A2A2-06 3 121828194 121828194 T A CD86 Silent p.V262V 0.40 TCGA-EE-A2A2-06 3 121838341 121838341 C T CD86 Missense_Mutation p.S317L 0.25 tolerated(1) unknown(0) TCGA-EE-A2A2-06 3 121994865 121994865 C T CASR Silent p.I528I 0.41 TCGA-EE-A2A2-06 3 122001056 122001056 C T CASR Missense_Mutation p.P579S 0.36 tolerated(0.43) benign(0.034) TCGA-EE-A2A2-06 3 122002901 122002901 C T CASR Silent p.N710N 0.35 TCGA-EE-A2A2-06 3 122003539 122003539 C T CASR Missense_Mutation p.S923F 0.35 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-EE-A2A2-06 3 122003540 122003540 C T CASR Silent p.S923S 0.35 TCGA-EE-A2A2-06 3 122632406 122632406 C T SEMA5B Missense_Mutation p.G806D 0.37 deleterious(0) probably_damaging(0.927) TCGA-EE-A2A2-06 3 122632407 122632407 C T SEMA5B Missense_Mutation p.G806S 0.37 deleterious(0) possibly_damaging(0.451) TCGA-EE-A2A2-06 3 123010051 123010051 T C ADCY5 Missense_Mutation p.N1079S 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 3 123451843 123451843 G A MYLK Silent p.L472L 0.37 TCGA-EE-A2A2-06 3 123452564 123452564 C T MYLK Missense_Mutation p.E427K 0.32 deleterious(0) benign(0.156) TCGA-EE-A2A2-06 3 124449234 124449234 G A UMPS 5'UTR 0.47 TCGA-EE-A2A2-06 3 124952383 124952383 T A ZNF148 Missense_Mutation p.N396I 0.44 deleterious(0) benign(0.05) TCGA-EE-A2A2-06 3 126157184 126157184 C T ZXDC 3'UTR 0.43 TCGA-EE-A2A2-06 3 126386006 126386006 G A NUP210P1 RNA 0.27 TCGA-EE-A2A2-06 3 127323849 127323849 G A MCM2 Missense_Mutation p.E175K 0.39 tolerated(0.22) possibly_damaging(0.72) TCGA-EE-A2A2-06 3 12859246 12859246 G A CAND2 Missense_Mutation p.A939T 0.40 tolerated(0.31) benign(0.003) TCGA-EE-A2A2-06 3 128813977 128813977 G A ISY1-RAB43 Missense_Mutation p.S296F 0.39 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A2A2-06 3 12983084 12983084 A C IQSEC1 Missense_Mutation p.L116R 0.47 deleterious(0) probably_damaging(0.977) TCGA-EE-A2A2-06 3 131624227 131624227 G A CPNE4 Missense_Mutation p.P21S 0.44 tolerated(0.25) benign(0.003) TCGA-EE-A2A2-06 3 13359188 13359188 G A NUP210 Missense_Mutation p.S1886F 0.41 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A2A2-06 3 133666168 133666168 C T SLCO2A1 Missense_Mutation p.M409I 0.35 tolerated(0.6) benign(0.002) TCGA-EE-A2A2-06 3 136192425 136192425 T C STAG1 Missense_Mutation p.R361G 0.33 deleterious(0.01) benign(0.101) TCGA-EE-A2A2-06 3 137483785 137483785 G A SOX14 Silent p.E53E 0.18 TCGA-EE-A2A2-06 3 13896034 13896034 G A WNT7A Nonsense_Mutation p.R189* 0.37 TCGA-EE-A2A2-06 3 139108410 139108410 C T COPB2 5'UTR 0.29 TCGA-EE-A2A2-06 3 142180908 142180908 G A ATR Missense_Mutation p.R2356C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 3 146171856 146171856 C T PLSCR2 Missense_Mutation p.R212K 0.46 tolerated(0.85) benign(0.031) TCGA-EE-A2A2-06 3 148459229 148459229 C - AGTR1 Frame_Shift_Del p.R137Afs*8 0.26 TCGA-EE-A2A2-06 3 148863268 148863268 C T HPS3 Silent p.V366V 0.40 TCGA-EE-A2A2-06 3 150645793 150645793 C T CLRN1 Missense_Mutation p.G223E 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 3 151012994 151012994 C T GPR87 Missense_Mutation p.E14K 0.35 tolerated_low_confidence(0.14) benign(0.015) TCGA-EE-A2A2-06 3 15126324 15126324 G A ZFYVE20 Silent p.I172I 0.40 TCGA-EE-A2A2-06 3 152163105 152163105 G A MBNL1 Missense_Mutation p.R195Q 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2A2-06 3 155200085 155200085 G A PLCH1 Silent p.L1252L 0.39 TCGA-EE-A2A2-06 3 155200483 155200483 C T PLCH1 Missense_Mutation p.G1119E 0.41 tolerated_low_confidence(0.6) benign(0.005) TCGA-EE-A2A2-06 3 155200553 155200553 C T PLCH1 Missense_Mutation p.V1096I 0.28 tolerated_low_confidence(0.28) benign(0.001) TCGA-EE-A2A2-06 3 155267630 155267630 C T PLCH1 Silent p.G424G 0.31 TCGA-EE-A2A2-06 3 158519991 158519991 A T MFSD1 Missense_Mutation p.D66V 0.38 tolerated(0.14) benign(0.011) TCGA-EE-A2A2-06 3 167051674 167051674 C T ZBBX Missense_Mutation p.E210K 0.36 tolerated(0.17) benign(0.02) TCGA-EE-A2A2-06 3 169521924 169521924 C T LRRC34 Missense_Mutation p.E192K 0.39 tolerated(0.18) benign(0.098) TCGA-EE-A2A2-06 3 169639003 169639003 G A SAMD7 Missense_Mutation p.D30N 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 3 169639067 169639067 G A SAMD7 Missense_Mutation p.G51E 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 3 169656145 169656145 C T SAMD7 Missense_Mutation p.L398F 0.37 tolerated(0.06) benign(0.023) TCGA-EE-A2A2-06 3 170150513 170150513 C T CLDN11 Missense_Mutation p.S198F 0.37 tolerated(0.32) probably_damaging(0.979) TCGA-EE-A2A2-06 3 170244711 170244711 G A SLC7A14 Silent p.F5F 0.33 TCGA-EE-A2A2-06 3 17053498 17053498 G A PLCL2 Missense_Mutation p.G761E 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2A2-06 3 178968769 178968769 G A KCNMB3 Intron 0.39 TCGA-EE-A2A2-06 3 182789134 182789134 G A MCCC1 Missense_Mutation p.S168F 0.41 tolerated(0.38) possibly_damaging(0.515) TCGA-EE-A2A2-06 3 183823977 183823977 C T HTR3E Silent p.I355I 0.32 TCGA-EE-A2A2-06 3 184100547 184100547 G A CHRD Missense_Mutation p.E323K 0.36 tolerated(0.12) possibly_damaging(0.747) TCGA-EE-A2A2-06 3 186333516 186333516 G A AHSG Missense_Mutation p.E86K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 3 186392940 186392940 G A HRG Silent p.P234P 0.31 TCGA-EE-A2A2-06 3 186838931 186838931 C T RPL39L 3'UTR 0.34 TCGA-EE-A2A2-06 3 191093238 191093238 C T CCDC50 Missense_Mutation p.S279F 0.42 deleterious(0.04) benign(0.323) TCGA-EE-A2A2-06 3 193029730 193029730 C T ATP13A5 Missense_Mutation p.E774K 0.30 tolerated(0.17) benign(0.314) TCGA-EE-A2A2-06 3 195245818 195245818 G A PPP1R2 Nonsense_Mutation p.Q190* 0.38 TCGA-EE-A2A2-06 3 195701399 195701399 G A SDHAP1 RNA 0.15 TCGA-EE-A2A2-06 3 195955749 195955749 G A SLC51A Silent p.V197V 0.42 TCGA-EE-A2A2-06 3 26751081 26751081 A - LRRC3B 5'UTR 0.24 TCGA-EE-A2A2-06 3 30769672 30769672 G A GADL1 3'UTR 0.33 TCGA-EE-A2A2-06 3 30769870 30769870 C T GADL1 Missense_Mutation p.G477E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 3 32995215 32995215 G A CCR4 Missense_Mutation p.D101N 0.45 tolerated(0.75) benign(0.39) TCGA-EE-A2A2-06 3 33249379 33249379 G A SUSD5 Silent p.I110I 0.36 TCGA-EE-A2A2-06 3 36898464 36898464 T G TRANK1 Missense_Mutation p.K873Q 0.44 deleterious(0.01) possibly_damaging(0.695) TCGA-EE-A2A2-06 3 38647610 38647610 C T SCN5A Missense_Mutation p.M390I 0.35 tolerated(0.05) probably_damaging(0.98) TCGA-EE-A2A2-06 3 38770082 38770082 G A SCN10A Missense_Mutation p.S864F 0.31 tolerated(0.13) possibly_damaging(0.486) TCGA-EE-A2A2-06 3 38951638 38951638 C T SCN11A Silent p.T340T 0.38 TCGA-EE-A2A2-06 3 391211 391211 C T CHL1 Missense_Mutation p.H340Y 0.26 tolerated(0.24) possibly_damaging(0.502) TCGA-EE-A2A2-06 3 39307002 39307002 C T CX3CR1 Silent p.R365R 0.36 TCGA-EE-A2A2-06 3 43373670 43373670 G A SNRK Missense_Mutation p.S200N 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 3 43373671 43373671 T A SNRK Missense_Mutation p.S200R 0.28 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A2A2-06 3 447275 447275 G A CHL1 Missense_Mutation p.G1186R 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A2-06 3 46011172 46011172 G A FYCO1 Silent p.L209L 0.35 TCGA-EE-A2A2-06 3 46023136 46023136 C T FYCO1 Missense_Mutation p.E30K 0.37 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2A2-06 3 46306989 46306989 C T CCR3 Missense_Mutation p.H135Y 0.42 tolerated(1) benign(0) TCGA-EE-A2A2-06 3 46307643 46307643 C T CCR3 Missense_Mutation p.P353S 0.30 tolerated(0.46) benign(0.009) TCGA-EE-A2A2-06 3 46541994 46541994 G A RTP3 Missense_Mutation p.E102K 0.42 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A2-06 3 48612535 48612535 G A COL7A1 Missense_Mutation p.P2081S 0.42 unknown(0) TCGA-EE-A2A2-06 3 48623787 48623787 G A COL7A1 Silent p.P1176P 0.38 TCGA-EE-A2A2-06 3 48688503 48688503 G A CELSR3 Silent p.F2064F 0.39 TCGA-EE-A2A2-06 3 49548071 49548071 C T DAG1 Missense_Mutation p.P35L 0.30 tolerated_low_confidence(0.07) benign(0.031) TCGA-EE-A2A2-06 3 49548072 49548072 C T DAG1 Silent p.P35P 0.31 TCGA-EE-A2A2-06 3 49897933 49897933 G A CAMKV Silent p.I275I 0.37 TCGA-EE-A2A2-06 3 50129560 50129560 G A RBM5 Silent p.R34R 0.39 TCGA-EE-A2A2-06 3 50129563 50129563 G T RBM5 Missense_Mutation p.R35S 0.40 tolerated(0.2) benign(0.227) TCGA-EE-A2A2-06 3 51367568 51367568 G A DOCK3 Splice_Site p.X1135_splice 0.33 TCGA-EE-A2A2-06 3 51417591 51417591 C T DOCK3 Missense_Mutation p.P1846S 0.41 tolerated_low_confidence(0.78) benign(0.001) TCGA-EE-A2A2-06 3 51430738 51430738 C - RBM15B Frame_Shift_Del p.K637Rfs*72 0.42 TCGA-EE-A2A2-06 3 52264925 52264925 G A TWF2 Silent p.L190L 0.57 TCGA-EE-A2A2-06 3 52281709 52281709 C T PPM1M 5'UTR 0.35 TCGA-EE-A2A2-06 3 52443604 52443604 C T BAP1 Missense_Mutation p.E30K 0.37 deleterious(0.04) benign(0.21) TCGA-EE-A2A2-06 3 52539159 52539159 G A STAB1 Silent p.K506K 0.38 TCGA-EE-A2A2-06 3 52547982 52547982 C T STAB1 Silent p.F1144F 0.42 TCGA-EE-A2A2-06 3 52620639 52620639 A T PBRM1 Nonsense_Mutation p.Y1038* 0.41 TCGA-EE-A2A2-06 3 52643485 52643485 A T PBRM1 Nonsense_Mutation p.L804* 0.35 TCGA-EE-A2A2-06 3 52741907 52741907 C T SPCS1 3'UTR 0.38 TCGA-EE-A2A2-06 3 53326729 53326729 C T DCP1A Silent p.Q251Q 0.48 TCGA-EE-A2A2-06 3 53381614 53381614 A T DCP1A 5'UTR 0.41 TCGA-EE-A2A2-06 3 54537555 54537555 G A CACNA2D3 Missense_Mutation p.D140N 0.29 deleterious(0.04) benign(0.039) TCGA-EE-A2A2-06 3 54604068 54604068 G A CACNA2D3 Silent p.A275A 0.29 TCGA-EE-A2A2-06 3 54661843 54661843 C T CACNA2D3 Silent p.F331F 0.28 TCGA-EE-A2A2-06 3 54958919 54958919 G A LRTM1 Missense_Mutation p.L111F 0.35 tolerated(0.18) benign(0.405) TCGA-EE-A2A2-06 3 56468606 56468606 C T ERC2 Missense_Mutation p.D144N 0.29 tolerated(0.18) benign(0.341) TCGA-EE-A2A2-06 3 64582627 64582627 A G ADAMTS9 Missense_Mutation p.V1353A 0.37 deleterious(0.01) possibly_damaging(0.654) TCGA-EE-A2A2-06 3 65479187 65479187 C T MAGI1 Missense_Mutation p.G184R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 3 71015038 71015038 C A FOXP1 Intron 0.37 TCGA-EE-A2A2-06 3 85984961 85984961 G A CADM2 Missense_Mutation p.E242K 0.29 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A2-06 3 97661390 97661390 T C MINA 3'UTR 0.44 TCGA-EE-A2A2-06 3 97669650 97669650 T G MINA Missense_Mutation p.I290L 0.28 tolerated(0.72) benign(0.008) TCGA-EE-A2A2-06 3 98073098 98073098 C T OR5K4 Missense_Mutation p.T134I 0.35 tolerated(0.11) benign(0.002) TCGA-EE-A2A2-06 3 98073395 98073395 G A OR5K4 Missense_Mutation p.G233E 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 3 98189178 98189178 G A OR5K1 Missense_Mutation p.G253E 0.53 deleterious(0.01) benign(0.404) TCGA-EE-A2A2-06 3 9833128 9833128 G A TADA3 Missense_Mutation p.P8L 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2A2-06 3 9833129 9833129 G A TADA3 Missense_Mutation p.P8S 0.30 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2A2-06 3 99513113 99513113 G T COL8A1 Missense_Mutation p.R123L 0.38 tolerated(0.23) unknown(0) TCGA-EE-A2A2-06 4 100047829 100047829 T A ADH4 Missense_Mutation p.K345I 0.64 deleterious(0.01) benign(0.006) TCGA-EE-A2A2-06 4 100268905 100268905 A C ADH1C Missense_Mutation p.I39M 0.51 possibly_damaging(0.582) TCGA-EE-A2A2-06 4 100527936 100527936 G A MTTP Missense_Mutation p.G459E 0.22 tolerated(1) benign(0.007) TCGA-EE-A2A2-06 4 102946496 102946496 T C BANK1 Missense_Mutation p.V475A 0.61 tolerated(0.54) benign(0.006) TCGA-EE-A2A2-06 4 103189214 103189214 G A SLC39A8 Missense_Mutation p.S288L 0.20 tolerated(0.37) benign(0.006) TCGA-EE-A2A2-06 4 110442617 110442617 C T SEC24B Silent p.T781T 0.18 TCGA-EE-A2A2-06 4 111397488 111397488 C T ENPEP 5'UTR 0.45 TCGA-EE-A2A2-06 4 118006426 118006426 C T TRAM1L1 Missense_Mutation p.G42R 0.19 tolerated(0.21) benign(0.014) TCGA-EE-A2A2-06 4 119158332 119158332 C T NDST3 Missense_Mutation p.T692I 0.44 tolerated(0.12) possibly_damaging(0.828) TCGA-EE-A2A2-06 4 119948195 119948195 C T SYNPO2 Missense_Mutation p.S224F 0.65 tolerated(0.58) benign(0.013) TCGA-EE-A2A2-06 4 119948196 119948196 T C SYNPO2 Silent p.S224S 0.63 TCGA-EE-A2A2-06 4 119951033 119951033 A T SYNPO2 Missense_Mutation p.Q368L 0.53 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A2-06 4 126373919 126373919 G A FAT4 Silent p.Q3916Q 0.63 TCGA-EE-A2A2-06 4 126411151 126411151 C T FAT4 Missense_Mutation p.P4392S 0.18 benign(0.038) TCGA-EE-A2A2-06 4 139157563 139157563 G A SLC7A11 Missense_Mutation p.S107F 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 4 139983140 139983140 T C ELF2 Missense_Mutation p.K217E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 4 145573916 145573916 G T HHIP Nonsense_Mutation p.E147* 0.17 TCGA-EE-A2A2-06 4 15067856 15067856 C T CPEB2 Missense_Mutation p.P986L 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2A2-06 4 152053519 152053519 C T SH3D19 Silent p.L645L 0.83 TCGA-EE-A2A2-06 4 152054201 152054201 C A SH3D19 Missense_Mutation p.G635C 0.84 deleterious(0) probably_damaging(0.928) TCGA-EE-A2A2-06 4 153332598 153332598 G A FBXW7 Nonsense_Mutation p.Q120* 0.73 TCGA-EE-A2A2-06 4 153897706 153897706 G A FHDC1 Missense_Mutation p.R1088Q 0.77 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 4 156632228 156632228 G A GUCY1A3 Missense_Mutation p.G304D 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 4 1657423 1657423 C T FAM53A Missense_Mutation p.G55E 0.14 deleterious(0.02) possibly_damaging(0.882) TCGA-EE-A2A2-06 4 166960592 166960592 T A TLL1 Silent p.L420L 0.82 TCGA-EE-A2A2-06 4 169189052 169189052 G A DDX60 Missense_Mutation p.R957C 0.77 tolerated(0.13) benign(0.001) TCGA-EE-A2A2-06 4 169197322 169197322 C T DDX60 Silent p.T663T 0.76 TCGA-EE-A2A2-06 4 17503480 17503480 G T QDPR Missense_Mutation p.L100I 0.56 tolerated(0.11) possibly_damaging(0.761) TCGA-EE-A2A2-06 4 1808928 1808928 C T FGFR3 Missense_Mutation p.S789F 0.23 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A2-06 4 187525728 187525728 C T FAT1 Missense_Mutation p.E3451K 0.78 probably_damaging(1) TCGA-EE-A2A2-06 4 21699079 21699079 C T KCNIP4 Intron 0.67 TCGA-EE-A2A2-06 4 23816198 23816198 T C PPARGC1A Missense_Mutation p.K303R 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A2A2-06 4 2747233 2747233 G A TNIP2 Silent p.V199V 0.58 TCGA-EE-A2A2-06 4 2749475 2749475 C T TNIP2 Silent p.L158L 0.59 TCGA-EE-A2A2-06 4 2986330 2986330 C T GRK4 Missense_Mutation p.S48F 0.17 deleterious(0.05) benign(0.063) TCGA-EE-A2A2-06 4 30724766 30724766 G A PCDH7 Silent p.L574L 0.57 TCGA-EE-A2A2-06 4 36230295 36230295 T C ARAP2 Missense_Mutation p.S272G 0.04 deleterious(0.04) benign(0.304) TCGA-EE-A2A2-06 4 36230836 36230836 C T ARAP2 Silent p.K91K 0.52 TCGA-EE-A2A2-06 4 37962566 37962566 T G PTTG2 Missense_Mutation p.S171A 0.31 tolerated(0.59) benign(0.287) TCGA-EE-A2A2-06 4 39033961 39033961 C T TMEM156 5'UTR 0.67 TCGA-EE-A2A2-06 4 41682052 41682052 G A LIMCH1 Silent p.L799L 0.38 TCGA-EE-A2A2-06 4 41946931 41946931 T A TMEM33 Missense_Mutation p.F173Y 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A2A2-06 4 47746416 47746416 T C CORIN Intron 0.58 TCGA-EE-A2A2-06 4 52861761 52861761 C T LRRC66 Missense_Mutation p.G476E 0.16 tolerated(0.24) benign(0.003) TCGA-EE-A2A2-06 4 55139830 55139830 C T PDGFRA Silent p.I497I 0.14 TCGA-EE-A2A2-06 4 57189571 57189571 C T KIAA1211 Silent p.S1072S 0.18 TCGA-EE-A2A2-06 4 5785473 5785473 C T EVC Silent p.L586L 0.17 TCGA-EE-A2A2-06 4 62598838 62598838 C T LPHN3 Missense_Mutation p.P254L 0.24 deleterious(0.05) probably_damaging(1) TCGA-EE-A2A2-06 4 65274970 65274970 G A TECRL Missense_Mutation p.H34Y 0.12 tolerated_low_confidence(0.36) benign(0.075) TCGA-EE-A2A2-06 4 676052 676052 G A MFSD7 Missense_Mutation p.R459C 0.19 deleterious(0.02) possibly_damaging(0.471) TCGA-EE-A2A2-06 4 68385125 68385125 C T CENPC Missense_Mutation p.D143N 0.18 tolerated(0.15) benign(0.36) TCGA-EE-A2A2-06 4 68795722 68795722 C T TMPRSS11A Missense_Mutation p.M122I 0.56 tolerated(0.15) benign(0.013) TCGA-EE-A2A2-06 4 68939712 68939712 G A TMPRSS11F Nonsense_Mutation p.R100* 0.70 TCGA-EE-A2A2-06 4 69096993 69096993 T C TMPRSS11B Missense_Mutation p.K205R 0.19 tolerated(0.16) benign(0.022) TCGA-EE-A2A2-06 4 69101751 69101751 C T TMPRSS11B Missense_Mutation p.E93K 0.52 tolerated(0.25) benign(0.146) TCGA-EE-A2A2-06 4 69798472 69798472 C T UGT2A3 Missense_Mutation p.M290I 0.13 tolerated(0.12) benign(0.118) TCGA-EE-A2A2-06 4 70346242 70346242 G A UGT2B4 3'UTR 0.38 TCGA-EE-A2A2-06 4 70719964 70719964 G A SULT1E1 Missense_Mutation p.P114S 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2A2-06 4 71275649 71275649 G A PROL1 Missense_Mutation p.E202K 0.17 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2A2-06 4 71275869 71275869 A G PROL1 3'UTR 0.40 TCGA-EE-A2A2-06 4 71471906 71471906 G A AMBN Missense_Mutation p.G268E 0.57 tolerated(0.08) possibly_damaging(0.463) TCGA-EE-A2A2-06 4 74357752 74357752 G A AFM Missense_Mutation p.S336N 0.58 tolerated(0.46) benign(0.022) TCGA-EE-A2A2-06 4 758838 758838 A T PCGF3 Missense_Mutation p.R223W 0.56 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 4 76896914 76896914 G A SDAD1 Silent p.L187L 0.20 TCGA-EE-A2A2-06 4 77476894 77476894 A C SHROOM3 Missense_Mutation p.T101P 0.53 deleterious(0) probably_damaging(0.986) TCGA-EE-A2A2-06 4 77678072 77678072 C T SHROOM3 Missense_Mutation p.S1727L 0.57 tolerated(0.34) benign(0.003) TCGA-EE-A2A2-06 4 78665876 78665876 A G CNOT6L Missense_Mutation p.L238P 0.53 deleterious(0) probably_damaging(0.961) TCGA-EE-A2A2-06 4 79173606 79173606 C T FRAS1 Nonsense_Mutation p.R124* 0.26 TCGA-EE-A2A2-06 4 80327602 80327602 C T GK2 3'UTR 0.12 TCGA-EE-A2A2-06 4 81952627 81952627 C T BMP3 Silent p.L63L 0.19 TCGA-EE-A2A2-06 4 82126170 82126170 G A PRKG2 Missense_Mutation p.S11F 0.54 tolerated(0.7) benign(0.008) TCGA-EE-A2A2-06 4 8229602 8229602 G A SH3TC1 Silent p.L727L 0.18 TCGA-EE-A2A2-06 4 83838849 83838849 C T THAP9 Missense_Mutation p.S495F 0.55 deleterious(0.02) possibly_damaging(0.569) TCGA-EE-A2A2-06 4 84222179 84222179 G A HPSE Missense_Mutation p.P469L 0.50 tolerated(0.65) benign(0.001) TCGA-EE-A2A2-06 4 85416877 85416877 G A NKX6-1 Missense_Mutation p.P264L 0.19 deleterious(0) unknown(0) TCGA-EE-A2A2-06 4 85696089 85696089 G A WDFY3 Silent p.I1546I 0.62 TCGA-EE-A2A2-06 4 90171262 90171262 G A GPRIN3 5'UTR 0.16 TCGA-EE-A2A2-06 4 96052390 96052390 G A BMPR1B Missense_Mutation p.G298E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 4 961364 961364 G A DGKQ Silent p.S320S 0.18 TCGA-EE-A2A2-06 4 9784156 9784156 C T DRD5 Missense_Mutation p.S168F 0.62 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 5 101834498 101834498 C T SLCO6A1 Silent p.R17R 0.16 TCGA-EE-A2A2-06 5 1064086 1064086 C T SLC12A7 Nonsense_Mutation p.W871* 0.16 TCGA-EE-A2A2-06 5 10992670 10992670 G A CTNND2 Silent p.N1068N 0.50 TCGA-EE-A2A2-06 5 111066742 111066742 C T NREP Missense_Mutation p.G72E 0.37 tolerated(0.05) probably_damaging(0.958) TCGA-EE-A2A2-06 5 115783481 115783481 C T SEMA6A Missense_Mutation p.G641S 0.19 tolerated(0.44) benign(0.008) TCGA-EE-A2A2-06 5 121356448 121356448 T A SRFBP1 Missense_Mutation p.L340I 0.27 tolerated(0.1) benign(0.345) TCGA-EE-A2A2-06 5 126784839 126784839 A C MEGF10 Missense_Mutation p.K969Q 0.17 tolerated(0.1) possibly_damaging(0.598) TCGA-EE-A2A2-06 5 131303687 131303687 G A ACSL6 Silent p.I514I 0.56 TCGA-EE-A2A2-06 5 131671556 131671556 G A SLC22A4 Missense_Mutation p.G436E 0.41 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A2-06 5 134782188 134782188 G A C5orf20 Missense_Mutation p.S204F 0.70 deleterious_low_confidence(0.02) possibly_damaging(0.683) TCGA-EE-A2A2-06 5 13753412 13753412 G A DNAH5 Missense_Mutation p.P3601L 0.26 possibly_damaging(0.908) TCGA-EE-A2A2-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.56 benign(0) TCGA-EE-A2A2-06 5 137733895 137733895 C T KDM3B Missense_Mutation p.R954C 0.64 deleterious(0) probably_damaging(0.961) TCGA-EE-A2A2-06 5 13883105 13883105 C T DNAH5 Missense_Mutation p.E1028K 0.25 benign(0.292) TCGA-EE-A2A2-06 5 140481048 140481048 G A PCDHB3 Missense_Mutation p.G272E 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-EE-A2A2-06 5 140764321 140764321 G A PCDHGA7 Missense_Mutation p.V619I 0.68 deleterious_low_confidence(0.02) possibly_damaging(0.458) TCGA-EE-A2A2-06 5 140802553 140802553 T A PCDHGA11 Missense_Mutation p.Y587N 0.65 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2A2-06 5 141008152 141008152 G A HDAC3 Missense_Mutation p.P222L 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 5 145442149 145442149 G A SH3RF2 Missense_Mutation p.R692Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 5 147019254 147019254 C T JAKMIP2 Missense_Mutation p.A491T 0.57 deleterious(0) probably_damaging(0.987) TCGA-EE-A2A2-06 5 149264377 149264377 T A PDE6A Missense_Mutation p.H631L 0.70 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A2-06 5 150029654 150029654 C T SYNPO Missense_Mutation p.A850V 0.66 tolerated(0.14) benign(0.046) TCGA-EE-A2A2-06 5 150672984 150672984 C T SLC36A3 Silent p.T115T 0.56 TCGA-EE-A2A2-06 5 150696555 150696555 G A SLC36A2 Silent p.L425L 0.63 TCGA-EE-A2A2-06 5 150929002 150929002 C T FAT2 Missense_Mutation p.G1548E 0.63 benign(0.13) TCGA-EE-A2A2-06 5 150929003 150929003 C T FAT2 Missense_Mutation p.G1548R 0.63 benign(0.005) TCGA-EE-A2A2-06 5 153054110 153054110 G A GRIA1 Silent p.V260V 0.63 TCGA-EE-A2A2-06 5 156723780 156723780 C T CYFIP2 Nonsense_Mutation p.Q103* 0.61 TCGA-EE-A2A2-06 5 168098256 168098256 G A SLIT3 Silent p.G1358G 0.67 TCGA-EE-A2A2-06 5 169720331 169720331 C T LCP2 Missense_Mutation p.D42N 0.69 tolerated(1) benign(0.025) TCGA-EE-A2A2-06 5 175111324 175111324 A C HRH2 Intron 0.61 TCGA-EE-A2A2-06 5 176885602 176885602 G A DBN1 Silent p.P413P 0.66 TCGA-EE-A2A2-06 5 177636398 177636398 G A HNRNPAB Missense_Mutation p.G246E 0.64 tolerated(0.11) unknown(0) TCGA-EE-A2A2-06 5 178391739 178391739 G A ZNF454 Missense_Mutation p.E112K 0.62 tolerated(0.1) benign(0.001) TCGA-EE-A2A2-06 5 179264662 179264662 G A C5orf45 Missense_Mutation p.P254L 0.64 tolerated(0.21) benign(0.016) TCGA-EE-A2A2-06 5 179264663 179264663 G A C5orf45 Missense_Mutation p.P254S 0.63 tolerated(0.35) benign(0.05) TCGA-EE-A2A2-06 5 180056259 180056259 C T FLT4 Missense_Mutation p.E329K 0.49 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2A2-06 5 180166799 180166799 C T OR2Y1 Missense_Mutation p.G87E 0.13 deleterious(0.02) possibly_damaging(0.796) TCGA-EE-A2A2-06 5 23527858 23527858 C T PRDM9 Silent p.P887P 0.62 TCGA-EE-A2A2-06 5 31294268 31294268 C T CDH6 Missense_Mutation p.S143F 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 5 31305303 31305303 A T CDH6 Missense_Mutation p.K341I 0.09 deleterious(0.02) benign(0.246) TCGA-EE-A2A2-06 5 31526642 31526642 G A DROSHA Missense_Mutation p.P133L 0.14 tolerated_low_confidence(0.17) benign(0.028) TCGA-EE-A2A2-06 5 31526643 31526643 G A DROSHA Missense_Mutation p.P133S 0.13 tolerated_low_confidence(0.1) benign(0.001) TCGA-EE-A2A2-06 5 32074523 32074523 C T PDZD2 Missense_Mutation p.P1104L 0.16 deleterious(0.02) benign(0.295) TCGA-EE-A2A2-06 5 33989322 33989322 C T AMACR Missense_Mutation p.R342K 0.16 tolerated(0.39) benign(0.002) TCGA-EE-A2A2-06 5 35065776 35065776 G A PRLR Silent p.S428S 0.39 TCGA-EE-A2A2-06 5 35876323 35876323 G A IL7R Missense_Mutation p.G372E 0.11 tolerated(0.19) benign(0.176) TCGA-EE-A2A2-06 5 38418331 38418331 G A EGFLAM Missense_Mutation p.G553E 0.59 deleterious(0.04) probably_damaging(1) TCGA-EE-A2A2-06 5 38464144 38464144 C T EGFLAM 3'UTR 0.49 TCGA-EE-A2A2-06 5 38482297 38482297 C T LIFR Silent p.L898L 0.43 TCGA-EE-A2A2-06 5 38924674 38924674 G A OSMR Missense_Mutation p.R674Q 0.49 tolerated(0.19) benign(0.053) TCGA-EE-A2A2-06 5 39153647 39153647 G A FYB Missense_Mutation p.H409Y 0.26 tolerated(0.24) possibly_damaging(0.634) TCGA-EE-A2A2-06 5 40835313 40835322 AGACCGGAAG - RPL37 5'UTR 0.26 TCGA-EE-A2A2-06 5 41840595 41840595 G T OXCT1 Missense_Mutation p.F230L 0.47 deleterious(0.02) possibly_damaging(0.585) TCGA-EE-A2A2-06 5 42719241 42719241 C T GHR Silent p.I544I 0.12 TCGA-EE-A2A2-06 5 43486958 43486958 A T C5orf34 3'UTR 0.22 TCGA-EE-A2A2-06 5 43619149 43619149 C T NNT Silent p.V205V 0.18 TCGA-EE-A2A2-06 5 45645578 45645578 G A HCN1 Silent p.F186F 0.49 TCGA-EE-A2A2-06 5 5146321 5146321 G A ADAMTS16 Missense_Mutation p.R85Q 0.17 deleterious(0.04) benign(0.135) TCGA-EE-A2A2-06 5 54403645 54403645 T C GZMA Missense_Mutation p.L80P 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 5 54552319 54552319 G A DHX29 Silent p.N1369N 0.42 TCGA-EE-A2A2-06 5 54923779 54923779 A T SLC38A9 Missense_Mutation p.I487N 0.50 deleterious(0.03) possibly_damaging(0.588) TCGA-EE-A2A2-06 5 73931914 73931914 G A ENC1 Missense_Mutation p.R133W 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A2-06 5 78076340 78076340 G A ARSB Silent p.I494I 0.19 TCGA-EE-A2A2-06 5 82833200 82833200 G A VCAN Missense_Mutation p.E1460K 0.33 tolerated(0.15) benign(0.091) TCGA-EE-A2A2-06 5 90136565 90136565 C T GPR98 Silent p.R5594R 0.19 TCGA-EE-A2A2-06 5 90144634 90144634 G A GPR98 Missense_Mutation p.E5734K 0.48 possibly_damaging(0.636) TCGA-EE-A2A2-06 5 9063217 9063217 C T SEMA5A Missense_Mutation p.G767E 0.38 tolerated(0.15) possibly_damaging(0.878) TCGA-EE-A2A2-06 5 9154633 9154633 G A SEMA5A Missense_Mutation p.P483L 0.36 deleterious(0) benign(0.007) TCGA-EE-A2A2-06 5 95735809 95735809 C T PCSK1 Nonsense_Mutation p.W426* 0.43 TCGA-EE-A2A2-06 6 10419776 10419776 C T TFAP2A 5'Flank 0.40 TCGA-EE-A2A2-06 6 117201821 117201821 C T RFX6 Silent p.T165T 0.66 TCGA-EE-A2A2-06 6 117641174 117641174 C T ROS1 Missense_Mutation p.E1933K 0.64 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2A2-06 6 117687279 117687279 A G ROS1 Silent p.N924N 0.65 TCGA-EE-A2A2-06 6 130762608 130762608 G A TMEM200A Silent p.R347R 0.75 TCGA-EE-A2A2-06 6 132029987 132029987 G A CTAGE9 Missense_Mutation p.P724L 0.41 tolerated(0.06) benign(0.299) TCGA-EE-A2A2-06 6 132939186 132939186 G A TAAR2 Silent p.S53S 0.67 TCGA-EE-A2A2-06 6 136502373 136502373 G A PDE7B Silent p.L319L 0.61 TCGA-EE-A2A2-06 6 136502374 136502374 A T PDE7B Nonsense_Mutation p.K320* 0.60 TCGA-EE-A2A2-06 6 136599099 136599099 G A BCLAF1 Missense_Mutation p.P307L 0.53 deleterious_low_confidence(0.04) possibly_damaging(0.851) TCGA-EE-A2A2-06 6 136913610 136913610 T A MAP3K5 Missense_Mutation p.E1007D 0.69 tolerated(0.25) possibly_damaging(0.492) TCGA-EE-A2A2-06 6 137519400 137519426 TCAAAACCATTTCTGGAGTGATCACTC - IFNGR1 In_Frame_Del p.E404_F412del 0.65 TCGA-EE-A2A2-06 6 137519434 137519434 A C IFNGR1 Missense_Mutation p.C402G 0.65 tolerated(1) benign(0) TCGA-EE-A2A2-06 6 144811249 144811249 G A UTRN Missense_Mutation p.E1393K 0.64 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A2-06 6 151789520 151789520 G A C6orf211 Missense_Mutation p.G201R 0.66 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2A2-06 6 151789521 151789521 G A C6orf211 Missense_Mutation p.G201E 0.66 deleterious(0) possibly_damaging(0.706) TCGA-EE-A2A2-06 6 152647134 152647134 A G SYNE1 Missense_Mutation p.S5133P 0.53 benign(0.001) TCGA-EE-A2A2-06 6 153019226 153019226 C T MYCT1 Silent p.N63N 0.41 TCGA-EE-A2A2-06 6 153019227 153019227 T A MYCT1 Missense_Mutation p.F64I 0.41 deleterious(0) benign(0.38) TCGA-EE-A2A2-06 6 155450878 155450878 G A TIAM2 Missense_Mutation p.R174K 0.61 deleterious_low_confidence(0.02) benign(0.071) TCGA-EE-A2A2-06 6 157521970 157521970 G A ARID1B Silent p.P1414P 0.59 TCGA-EE-A2A2-06 6 157521971 157521971 G A ARID1B Missense_Mutation p.D1415N 0.59 possibly_damaging(0.648) TCGA-EE-A2A2-06 6 159672449 159672449 G A FNDC1 Silent p.K1650K 0.59 TCGA-EE-A2A2-06 6 160999693 160999693 G A LPA Missense_Mutation p.R1445C 0.65 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A2A2-06 6 161020670 161020670 C T LPA Missense_Mutation p.G1050E 0.78 tolerated(0.21) probably_damaging(0.951) TCGA-EE-A2A2-06 6 166743718 166743718 G A SFT2D1 Silent p.S27S 0.68 TCGA-EE-A2A2-06 6 167721271 167721271 G A UNC93A Silent p.A327A 0.48 TCGA-EE-A2A2-06 6 167721272 167721272 G A UNC93A Missense_Mutation p.V328M 0.48 deleterious(0.03) benign(0.036) TCGA-EE-A2A2-06 6 170594138 170594138 C T DLL1 Missense_Mutation p.G373D 0.66 deleterious(0.01) benign(0.292) TCGA-EE-A2A2-06 6 24291202 24291202 C T DCDC2 Missense_Mutation p.S221N 0.31 tolerated(0.3) possibly_damaging(0.48) TCGA-EE-A2A2-06 6 24875981 24875981 G A FAM65B Silent p.P13P 0.32 TCGA-EE-A2A2-06 6 24875982 24875982 G A FAM65B Missense_Mutation p.P13L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 6 26021002 26021002 G A HIST1H3A Silent p.E95E 0.40 TCGA-EE-A2A2-06 6 28268620 28268620 C T PGBD1 Missense_Mutation p.S330F 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2A2-06 6 28887960 28887960 G A TRIM27 Silent p.S192S 0.38 TCGA-EE-A2A2-06 6 28887961 28887961 G A TRIM27 Missense_Mutation p.S192F 0.38 tolerated(0.82) possibly_damaging(0.831) TCGA-EE-A2A2-06 6 29012512 29012512 C T OR2W1 Missense_Mutation p.M147I 0.37 tolerated(0.42) benign(0.003) TCGA-EE-A2A2-06 6 29323164 29323164 T A OR5V1 Missense_Mutation p.K270I 0.31 tolerated(0.19) possibly_damaging(0.845) TCGA-EE-A2A2-06 6 29408527 29408527 C T OR10C1 Silent p.I245I 0.38 TCGA-EE-A2A2-06 6 29627395 29627395 C T MOG Nonsense_Mutation p.R130* 0.32 TCGA-EE-A2A2-06 6 30569809 30569809 G A PPP1R10 Nonsense_Mutation p.R873* 0.38 TCGA-EE-A2A2-06 6 31079247 31079247 G A C6orf15 Missense_Mutation p.P297S 0.41 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A2A2-06 6 31107725 31107725 C T PSORS1C1 3'UTR 0.28 TCGA-EE-A2A2-06 6 31107726 31107726 C T PSORS1C1 3'UTR 0.28 TCGA-EE-A2A2-06 6 3154135 3154135 C T TUBB2A Missense_Mutation p.G434R 0.30 tolerated_low_confidence(0.32) unknown(0) TCGA-EE-A2A2-06 6 31599065 31599065 A C PRRC2A Missense_Mutation p.E872A 0.31 benign(0.292) TCGA-EE-A2A2-06 6 31711766 31711766 C T MSH5 Silent p.F167F 0.38 TCGA-EE-A2A2-06 6 31749511 31749511 G A VARS Missense_Mutation p.S792F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 6 31930493 31930493 C T SKIV2L Missense_Mutation p.S405F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 6 32041447 32041447 G A RNA5SP206 3'Flank 0.39 TCGA-EE-A2A2-06 6 32046957 32046957 C T RNA5SP206 5'Flank 0.38 TCGA-EE-A2A2-06 6 33146224 33146224 C T COL11A2 Silent p.E501E 0.39 TCGA-EE-A2A2-06 6 33385710 33385710 G A CUTA Intron 0.44 TCGA-EE-A2A2-06 6 34949602 34949602 C T ANKS1A Silent p.L191L 0.40 TCGA-EE-A2A2-06 6 35434167 35434167 C T FANCE 3'UTR 0.45 TCGA-EE-A2A2-06 6 35755834 35755834 C T CLPSL1 3'UTR 0.17 TCGA-EE-A2A2-06 6 35763000 35763000 C T CLPS Missense_Mutation p.G88R 0.26 deleterious(0.05) possibly_damaging(0.882) TCGA-EE-A2A2-06 6 35773671 35773671 C T LHFPL5 Missense_Mutation p.S75F 0.38 deleterious(0.05) probably_damaging(0.942) TCGA-EE-A2A2-06 6 36196743 36196743 C T BRPF3 Missense_Mutation p.P1115L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 6 36298017 36298017 C T C6orf222 Missense_Mutation p.D151N 0.35 deleterious(0.01) benign(0.001) TCGA-EE-A2A2-06 6 36983600 36983600 C T FGD2 Silent p.F362F 0.33 TCGA-EE-A2A2-06 6 38723833 38723833 G A DNAH8 Missense_Mutation p.R281K 0.27 benign(0.072) TCGA-EE-A2A2-06 6 38810519 38810519 C T DNAH8 Missense_Mutation p.S1345L 0.40 benign(0.403) TCGA-EE-A2A2-06 6 38885165 38885165 T G DNAH8 Missense_Mutation p.W3214G 0.33 probably_damaging(0.999) TCGA-EE-A2A2-06 6 39846280 39846280 G A DAAM2 Silent p.K487K 0.33 TCGA-EE-A2A2-06 6 41196546 41196546 C T TREML4 Missense_Mutation p.S53F 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A2A2-06 6 41304018 41304018 A C NCR2 Silent p.T82T 0.33 TCGA-EE-A2A2-06 6 41565545 41565545 C T FOXP4 Silent p.P584P 0.35 TCGA-EE-A2A2-06 6 41565546 41565546 C A FOXP4 Missense_Mutation p.L585I 0.36 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A2A2-06 6 41897973 41897973 C T BYSL Missense_Mutation p.P179S 0.36 deleterious(0.04) possibly_damaging(0.536) TCGA-EE-A2A2-06 6 43230740 43230740 C T TTBK1 Silent p.I546I 0.33 TCGA-EE-A2A2-06 6 43250912 43250912 G A TTBK1 Missense_Mutation p.D812N 0.40 probably_damaging(0.99) TCGA-EE-A2A2-06 6 43266304 43266304 C T SLC22A7 Missense_Mutation p.P70S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 6 43745284 43745284 C T VEGFA Missense_Mutation p.P246L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 6 44198583 44198583 A G SLC29A1 Silent p.E241E 0.34 TCGA-EE-A2A2-06 6 44320496 44320496 G A SPATS1 Missense_Mutation p.G58E 0.40 tolerated_low_confidence(0.08) benign(0.023) TCGA-EE-A2A2-06 6 46623599 46623599 C T SLC25A27 Silent p.L42L 0.35 TCGA-EE-A2A2-06 6 46847631 46847631 C T GPR116 Silent p.S320S 0.35 TCGA-EE-A2A2-06 6 49585872 49585872 C T RHAG Missense_Mutation p.G134E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 6 49986678 49986678 C T DEFB110 3'UTR 0.27 TCGA-EE-A2A2-06 6 52656542 52656542 G A GSTA1 3'UTR 0.38 TCGA-EE-A2A2-06 6 54804673 54804673 G A FAM83B Missense_Mutation p.E302K 0.39 tolerated(0.15) benign(0.014) TCGA-EE-A2A2-06 6 55120104 55120104 G A HCRTR2 Missense_Mutation p.M191I 0.33 deleterious(0.02) possibly_damaging(0.593) TCGA-EE-A2A2-06 6 55638936 55638936 C T BMP5 Missense_Mutation p.R313Q 0.41 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A2-06 6 57006886 57006886 C T ZNF451 Missense_Mutation p.H333Y 0.42 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2A2-06 6 5999216 5999216 G A NRN1 Missense_Mutation p.S141F 0.38 deleterious(0.03) benign(0.366) TCGA-EE-A2A2-06 6 62887131 62887131 G A KHDRBS2 Missense_Mutation p.L60F 0.31 deleterious(0) possibly_damaging(0.473) TCGA-EE-A2A2-06 6 70034864 70034864 G A BAI3 Missense_Mutation p.G972E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 6 72955546 72955546 C G RIMS1 Missense_Mutation p.H704D 0.16 deleterious(0) possibly_damaging(0.727) TCGA-EE-A2A2-06 6 73787572 73787572 G A KCNQ5 Missense_Mutation p.E294K 0.67 deleterious(0.01) benign(0.032) TCGA-EE-A2A2-06 6 7583110 7583110 C T DSP Missense_Mutation p.S1872F 0.36 probably_damaging(0.996) TCGA-EE-A2A2-06 6 76412655 76412655 G A SENP6 Silent p.V861V 0.70 TCGA-EE-A2A2-06 6 83847746 83847746 C T DOPEY1 Silent p.L1329L 0.44 TCGA-EE-A2A2-06 6 86324599 86324599 G A SYNCRIP Nonsense_Mutation p.Q583* 0.63 TCGA-EE-A2A2-06 6 87725874 87725874 C T HTR1E Silent p.H274H 0.64 TCGA-EE-A2A2-06 6 93979364 93979364 C T EPHA7 Silent p.R488R 0.64 TCGA-EE-A2A2-06 7 100205613 100205613 C T PCOLCE Missense_Mutation p.P413S 0.34 tolerated(0.57) benign(0.013) TCGA-EE-A2A2-06 7 100205614 100205614 C T PCOLCE Missense_Mutation p.P413L 0.34 tolerated(0.09) possibly_damaging(0.484) TCGA-EE-A2A2-06 7 100320819 100320819 T C EPO 3'UTR 0.45 TCGA-EE-A2A2-06 7 100676654 100676654 C T MUC17 Missense_Mutation p.P653S 0.35 benign(0.159) TCGA-EE-A2A2-06 7 101183202 101183202 C T COL26A1 Missense_Mutation p.P159L 0.32 deleterious(0.03) benign(0.15) TCGA-EE-A2A2-06 7 101918603 101918603 C T CUX1 Silent p.F510F 0.39 TCGA-EE-A2A2-06 7 102584657 102584657 C T LRRC17 Missense_Mutation p.A310V 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2A2-06 7 103126851 103126851 G A RELN Missense_Mutation p.S3259F 0.40 tolerated(0.07) benign(0.211) TCGA-EE-A2A2-06 7 106836293 106836293 C T HBP1 Missense_Mutation p.P361L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A2-06 7 108213754 108213754 G A DNAJB9 Missense_Mutation p.R210K 0.35 tolerated(0.87) benign(0.174) TCGA-EE-A2A2-06 7 1097781 1097781 C T GPR146 Silent p.L210L 0.36 TCGA-EE-A2A2-06 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.38 TCGA-EE-A2A2-06 7 115580925 115580925 C T TFEC Missense_Mutation p.D242N 0.40 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A2A2-06 7 115581838 115581838 G A TFEC Intron 0.43 TCGA-EE-A2A2-06 7 119915161 119915161 G A KCND2 Missense_Mutation p.E159K 0.35 tolerated(0.46) benign(0.015) TCGA-EE-A2A2-06 7 121651045 121651045 G A PTPRZ1 Missense_Mutation p.E649K 0.24 deleterious_low_confidence(0) benign(0.05) TCGA-EE-A2A2-06 7 127235623 127235623 G A FSCN3 Nonsense_Mutation p.W136* 0.39 TCGA-EE-A2A2-06 7 128141846 128141846 G A METTL2B Missense_Mutation p.G338E 0.37 deleterious(0) probably_damaging(0.923) TCGA-EE-A2A2-06 7 131910981 131910981 C T PLXNA4 Missense_Mutation p.E641K 0.32 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A2A2-06 7 132192577 132192577 G A PLXNA4 Silent p.S292S 0.30 TCGA-EE-A2A2-06 7 137080407 137080407 C A DGKI Silent p.R1006R 0.43 TCGA-EE-A2A2-06 7 138601935 138601935 C T KIAA1549 Missense_Mutation p.D813N 0.26 tolerated(0.26) benign(0.011) TCGA-EE-A2A2-06 7 138604145 138604145 G A KIAA1549 Missense_Mutation p.S76F 0.32 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-EE-A2A2-06 7 13971355 13971355 C T ETV1 Missense_Mutation p.E192K 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2A2-06 7 141490491 141490491 C T TAS2R5 Silent p.F110F 0.18 TCGA-EE-A2A2-06 7 141759749 141759749 G A MGAM Missense_Mutation p.D1348N 0.55 deleterious(0.04) benign(0.012) TCGA-EE-A2A2-06 7 142032418 142032418 C T TRBV7-1 Missense_Mutation p.P80S 0.21 tolerated(0.14) benign(0.328) TCGA-EE-A2A2-06 7 142139334 142139334 C T TRBV7-6 Silent p.T97T 0.33 TCGA-EE-A2A2-06 7 142180678 142180678 C T TRBV6-5 Missense_Mutation p.G61R 0.18 deleterious(0.05) possibly_damaging(0.766) TCGA-EE-A2A2-06 7 142180726 142180726 C T TRBV6-5 Missense_Mutation p.D45N 0.17 tolerated(0.48) possibly_damaging(0.651) TCGA-EE-A2A2-06 7 142247370 142247370 T - TRBV7-3 Frame_Shift_Del p.N29Tfs*10 0.33 TCGA-EE-A2A2-06 7 142364595 142364595 G A TRBV24-1 Missense_Mutation p.G77E 0.43 deleterious(0.03) probably_damaging(0.942) TCGA-EE-A2A2-06 7 142622658 142622658 C T TRPV5 Missense_Mutation p.R363Q 0.33 tolerated(0.1) benign(0.298) TCGA-EE-A2A2-06 7 142749774 142749774 C T OR6V1 Silent p.L113L 0.31 TCGA-EE-A2A2-06 7 143047569 143047569 G A CLCN1 Silent p.K836K 0.36 TCGA-EE-A2A2-06 7 143048977 143048977 G A CLCN1 Silent p.L962L 0.39 TCGA-EE-A2A2-06 7 143053858 143053858 C T FAM131B Missense_Mutation p.G290R 0.38 tolerated(0.17) benign(0.153) TCGA-EE-A2A2-06 7 143807483 143807483 G A OR2A2 Missense_Mutation p.E270K 0.35 tolerated(0.46) benign(0.019) TCGA-EE-A2A2-06 7 146741113 146741113 G A CNTNAP2 Missense_Mutation p.G173R 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 7 147914405 147914405 G A CNTNAP2 Silent p.G1012G 0.32 TCGA-EE-A2A2-06 7 148484200 148484200 C T CUL1 Silent p.I489I 0.36 TCGA-EE-A2A2-06 7 149477368 149477368 C T SSPO RNA 0.39 TCGA-EE-A2A2-06 7 149492394 149492394 C T SSPO RNA 0.37 TCGA-EE-A2A2-06 7 150171298 150171298 G A GIMAP8 Missense_Mutation p.R294K 0.35 tolerated(0.52) benign(0.129) TCGA-EE-A2A2-06 7 150217434 150217434 G A GIMAP7 Missense_Mutation p.M124I 0.37 tolerated(0.06) possibly_damaging(0.692) TCGA-EE-A2A2-06 7 150554300 150554300 G A AOC1 Missense_Mutation p.E248K 0.35 deleterious(0) possibly_damaging(0.737) TCGA-EE-A2A2-06 7 150814517 150814517 G A AGAP3 Missense_Mutation p.D180N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 7 151859582 151859582 G A KMT2C Missense_Mutation p.P3694S 0.37 benign(0.015) TCGA-EE-A2A2-06 7 151962153 151962153 C T KMT2C Missense_Mutation p.C385Y 0.07 probably_damaging(0.999) TCGA-EE-A2A2-06 7 154863154 154863154 G A HTR5A Missense_Mutation p.G182E 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2A2-06 7 16725628 16725628 C T BZW2 Silent p.I168I 0.42 TCGA-EE-A2A2-06 7 18767289 18767289 C T HDAC9 Silent p.H606H 0.42 TCGA-EE-A2A2-06 7 21723441 21723441 C T DNAH11 Missense_Mutation p.R1841C 0.34 probably_damaging(0.999) TCGA-EE-A2A2-06 7 21789384 21789384 G A DNAH11 Missense_Mutation p.S2928N 0.43 possibly_damaging(0.535) TCGA-EE-A2A2-06 7 22162022 22162022 G A RAPGEF5 3'UTR 0.23 TCGA-EE-A2A2-06 7 23352044 23352044 C T IGF2BP3 Silent p.Q559Q 0.35 TCGA-EE-A2A2-06 7 23811884 23811884 G A STK31 Missense_Mutation p.S651N 0.43 tolerated(1) benign(0.002) TCGA-EE-A2A2-06 7 24705247 24705247 C A MPP6 Missense_Mutation p.P275Q 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 7 24742400 24742400 G A DFNA5 Silent p.I412I 0.39 TCGA-EE-A2A2-06 7 2692625 2692625 G A TTYH3 Nonsense_Mutation p.W334* 0.32 TCGA-EE-A2A2-06 7 27140431 27140431 C T HOXA2 Missense_Mutation p.D349N 0.38 deleterious(0.03) possibly_damaging(0.637) TCGA-EE-A2A2-06 7 2748707 2748707 A G AMZ1 Splice_Site p.X201_splice 0.31 TCGA-EE-A2A2-06 7 30492470 30492470 G A NOD1 Missense_Mutation p.T188I 0.41 tolerated(0.4) benign(0.143) TCGA-EE-A2A2-06 7 30963570 30963570 C T AQP1 3'UTR 0.35 TCGA-EE-A2A2-06 7 31792881 31792881 G A PDE1C 3'UTR 0.31 TCGA-EE-A2A2-06 7 31829807 31829807 G A PDE1C Intron 0.35 TCGA-EE-A2A2-06 7 32209401 32209401 A G PDE1C Missense_Mutation p.F102L 0.35 tolerated(0.67) benign(0.001) TCGA-EE-A2A2-06 7 34118669 34118669 G A BMPER Missense_Mutation p.E427K 0.42 tolerated(0.33) benign(0.003) TCGA-EE-A2A2-06 7 36657925 36657925 T A AOAH Silent p.P243P 0.43 TCGA-EE-A2A2-06 7 3681621 3681621 G A SDK1 Silent p.R199R 0.27 TCGA-EE-A2A2-06 7 38725323 38725323 C T FAM183B Missense_Mutation p.D95N 0.35 tolerated(0.46) benign(0.03) TCGA-EE-A2A2-06 7 39379267 39379267 C T POU6F2 Nonsense_Mutation p.Q180* 0.36 TCGA-EE-A2A2-06 7 40041554 40041554 T C CDK13 Silent p.L759L 0.27 TCGA-EE-A2A2-06 7 4051792 4051792 A T SDK1 Missense_Mutation p.N782I 0.33 deleterious(0) possibly_damaging(0.883) TCGA-EE-A2A2-06 7 4259903 4259903 G A SDK1 Splice_Site p.X1901_splice 0.34 TCGA-EE-A2A2-06 7 44735718 44735718 C T OGDH Missense_Mutation p.P588L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 7 45104163 45104163 C T CCM2 Silent p.I151I 0.39 TCGA-EE-A2A2-06 7 45750222 45750222 G A ADCY1 Missense_Mutation p.D1010N 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 7 4900186 4900186 G A PAPOLB Missense_Mutation p.P418L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 7 50367321 50367321 G A IKZF1 Missense_Mutation p.G43E 0.53 deleterious(0.02) benign(0.127) TCGA-EE-A2A2-06 7 53103641 53103641 G A POM121L12 Missense_Mutation p.V93I 0.38 tolerated(0.18) benign(0.031) TCGA-EE-A2A2-06 7 5338755 5338755 G A SLC29A4 Missense_Mutation p.R340K 0.40 tolerated(0.36) benign(0.016) TCGA-EE-A2A2-06 7 54617633 54617633 G A VSTM2A Missense_Mutation p.G135E 0.43 tolerated(0.07) probably_damaging(1) TCGA-EE-A2A2-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.45 TCGA-EE-A2A2-06 7 66103255 66103255 C T KCTD7 Missense_Mutation p.P54S 0.38 deleterious_low_confidence(0) benign(0.033) TCGA-EE-A2A2-06 7 6628595 6628595 C T ZDHHC4 3'UTR 0.38 TCGA-EE-A2A2-06 7 70250942 70250942 G A AUTS2 Silent p.E742E 0.03 TCGA-EE-A2A2-06 7 71488686 71488686 G A CALN1 Missense_Mutation p.R153C 0.39 deleterious(0) possibly_damaging(0.59) TCGA-EE-A2A2-06 7 7278205 7278205 G A C1GALT1 Silent p.R180R 0.42 TCGA-EE-A2A2-06 7 74303873 74303873 G A STAG3L2 RNA 0.69 TCGA-EE-A2A2-06 7 75398992 75398992 G A CCL26 3'UTR 0.43 TCGA-EE-A2A2-06 7 75398993 75398993 G A CCL26 3'UTR 0.43 TCGA-EE-A2A2-06 7 77973208 77973208 C T MAGI2 Missense_Mutation p.S432N 0.27 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A2-06 7 78256514 78256514 C T MAGI2 Missense_Mutation p.D154N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 7 82476488 82476488 T A PCLO Missense_Mutation p.Q4577L 0.41 unknown(0) TCGA-EE-A2A2-06 7 82544124 82544124 C T PCLO Missense_Mutation p.G4393E 0.52 unknown(0) TCGA-EE-A2A2-06 7 82579048 82579048 G A PCLO Missense_Mutation p.S3619F 0.34 unknown(0) TCGA-EE-A2A2-06 7 82583374 82583374 C T PCLO Missense_Mutation p.D2299N 0.43 unknown(0) TCGA-EE-A2A2-06 7 82585116 82585116 G A PCLO Missense_Mutation p.S1718L 0.40 unknown(0) TCGA-EE-A2A2-06 7 82595334 82595334 G A PCLO Missense_Mutation p.P1257L 0.42 unknown(0) TCGA-EE-A2A2-06 7 87329745 87329745 A G RUNDC3B Missense_Mutation p.T100A 0.43 tolerated(0.1) benign(0.1) TCGA-EE-A2A2-06 7 89854414 89854414 G A STEAP2 Missense_Mutation p.M6I 0.35 tolerated(0.18) benign(0.026) TCGA-EE-A2A2-06 7 89982181 89982181 G A GTPBP10 Missense_Mutation p.G29R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 7 89982182 89982182 G A GTPBP10 Missense_Mutation p.G29E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 7 90741984 90741984 G A CDK14 Missense_Mutation p.E410K 0.62 tolerated(0.54) benign(0.032) TCGA-EE-A2A2-06 7 92762391 92762391 C T SAMD9L Missense_Mutation p.G965E 0.20 tolerated(0.06) possibly_damaging(0.828) TCGA-EE-A2A2-06 7 92762826 92762826 G A SAMD9L Missense_Mutation p.S820F 0.32 tolerated(0.07) benign(0.047) TCGA-EE-A2A2-06 7 93090138 93090138 C T CALCR Missense_Mutation p.D249N 0.33 tolerated(0.95) benign(0.081) TCGA-EE-A2A2-06 7 93090202 93090202 C T CALCR Silent p.L227L 0.40 TCGA-EE-A2A2-06 7 94855390 94855390 G A PPP1R9A Missense_Mutation p.E692K 0.39 deleterious(0) benign(0.236) TCGA-EE-A2A2-06 7 94928408 94928408 G A PON1 Nonsense_Mutation p.R306* 0.51 TCGA-EE-A2A2-06 7 97821333 97821333 C T LMTK2 Missense_Mutation p.P519L 0.35 tolerated(0.15) benign(0.019) TCGA-EE-A2A2-06 7 97821334 97821334 C T LMTK2 Silent p.P519P 0.35 TCGA-EE-A2A2-06 7 98643359 98643359 G A SMURF1 Silent p.F432F 0.33 TCGA-EE-A2A2-06 8 100493950 100493950 C T VPS13B Missense_Mutation p.P1264S 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2A2-06 8 101018276 101018276 A G RGS22 Missense_Mutation p.L808S 0.45 deleterious(0) probably_damaging(0.98) TCGA-EE-A2A2-06 8 104897710 104897710 G A RIMS2 Missense_Mutation p.D295N 0.31 tolerated_low_confidence(0.14) benign(0.155) TCGA-EE-A2A2-06 8 105440328 105440328 C T DPYS Silent p.G324G 0.30 TCGA-EE-A2A2-06 8 108276487 108276487 T C ANGPT1 Missense_Mutation p.D433G 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 8 109260865 109260865 G A EIF3E Missense_Mutation p.L23F 0.45 deleterious(0.03) possibly_damaging(0.452) TCGA-EE-A2A2-06 8 110471946 110471946 G A PKHD1L1 Missense_Mutation p.G2376E 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2A2-06 8 110477280 110477280 C T PKHD1L1 Missense_Mutation p.S2740F 0.31 deleterious(0.01) possibly_damaging(0.898) TCGA-EE-A2A2-06 8 110520124 110520124 G A PKHD1L1 Missense_Mutation p.G3743R 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2A2-06 8 110535569 110535569 T G PKHD1L1 Missense_Mutation p.F4146L 0.38 deleterious(0) possibly_damaging(0.827) TCGA-EE-A2A2-06 8 113237040 113237040 C T CSMD3 Missense_Mutation p.R3695Q 0.30 deleterious(0.01) possibly_damaging(0.793) TCGA-EE-A2A2-06 8 11615997 11615997 C T GATA4 3'UTR 0.36 TCGA-EE-A2A2-06 8 117950537 117950537 G A AARD Missense_Mutation p.G19R 0.36 tolerated(0.15) probably_damaging(0.991) TCGA-EE-A2A2-06 8 118147554 118147554 C T SLC30A8 5'Flank 0.33 TCGA-EE-A2A2-06 8 119945466 119945466 G A TNFRSF11B Missense_Mutation p.T35I 0.35 deleterious(0) possibly_damaging(0.745) TCGA-EE-A2A2-06 8 11995223 11995223 C T USP17L2 Missense_Mutation p.M349I 0.73 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2A2-06 8 11995798 11995798 G A USP17L2 Nonsense_Mutation p.Q158* 0.11 TCGA-EE-A2A2-06 8 121238917 121238917 G A COL14A1 Missense_Mutation p.S639N 0.36 tolerated(0.06) benign(0.027) TCGA-EE-A2A2-06 8 121293266 121293266 C T COL14A1 Silent p.L1264L 0.34 TCGA-EE-A2A2-06 8 124267642 124267642 G A ZHX1 Missense_Mutation p.P182L 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A2-06 8 124384901 124384902 - A ATAD2 Frame_Shift_Ins p.K116* 0.27 TCGA-EE-A2A2-06 8 124693244 124693244 A G ANXA13 3'UTR 0.63 TCGA-EE-A2A2-06 8 124992923 124992923 G A FER1L6 Missense_Mutation p.D428N 0.55 deleterious(0.05) possibly_damaging(0.628) TCGA-EE-A2A2-06 8 128428546 128428546 A G POU5F1B Silent p.E145E 0.29 TCGA-EE-A2A2-06 8 13162805 13162805 G A DLC1 Nonsense_Mutation p.Q441* 0.38 TCGA-EE-A2A2-06 8 133848864 133848864 T A PHF20L1 Missense_Mutation p.F663L 0.27 tolerated(0.87) benign(0.021) TCGA-EE-A2A2-06 8 139696699 139696699 G A COL22A1 Missense_Mutation p.S994L 0.31 unknown(0) TCGA-EE-A2A2-06 8 142151323 142151323 G T DENND3 Missense_Mutation p.G95C 0.34 deleterious(0) probably_damaging(0.978) TCGA-EE-A2A2-06 8 142222354 142222354 G A SLC45A4 Missense_Mutation p.T697I 0.45 deleterious_low_confidence(0.01) benign(0.283) TCGA-EE-A2A2-06 8 142228125 142228125 G A SLC45A4 Silent p.F487F 0.32 TCGA-EE-A2A2-06 8 143562623 143562623 C T BAI1 Silent p.L613L 0.40 TCGA-EE-A2A2-06 8 143960599 143960599 C T CYP11B1 Missense_Mutation p.D82N 0.40 tolerated(0.33) benign(0.014) TCGA-EE-A2A2-06 8 143993989 143993989 C T CYP11B2 Missense_Mutation p.G452E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 8 143999261 143999261 A G CYP11B2 5'Flank 0.35 TCGA-EE-A2A2-06 8 144945398 144945398 G A EPPK1 Missense_Mutation p.P675L 0.38 benign(0.232) TCGA-EE-A2A2-06 8 144993387 144993387 G A PLEC Silent p.P3671P 0.34 TCGA-EE-A2A2-06 8 144993388 144993388 G A PLEC Missense_Mutation p.P3671L 0.34 probably_damaging(0.978) TCGA-EE-A2A2-06 8 146157959 146157959 C T ZNF16 Missense_Mutation p.E72K 0.32 tolerated(0.24) benign(0.003) TCGA-EE-A2A2-06 8 15517093 15517093 C T TUSC3 Silent p.L168L 0.32 TCGA-EE-A2A2-06 8 17132465 17132465 C T VPS37A Missense_Mutation p.P214S 0.34 tolerated(0.19) benign(0.003) TCGA-EE-A2A2-06 8 17132466 17132466 C T VPS37A Missense_Mutation p.P214L 0.34 tolerated(0.14) benign(0.002) TCGA-EE-A2A2-06 8 17579394 17579394 C T MTUS1 Intron 0.38 TCGA-EE-A2A2-06 8 17579395 17579395 C T MTUS1 Intron 0.37 TCGA-EE-A2A2-06 8 18730199 18730199 C T PSD3 Missense_Mutation p.E59K 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2A2-06 8 21958469 21958469 C T FAM160B2 Silent p.T534T 0.35 TCGA-EE-A2A2-06 8 22102546 22102546 G A POLR3D 5'Flank 0.36 TCGA-EE-A2A2-06 8 22451334 22451334 G A PDLIM2 Missense_Mutation p.G574R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 8 22451335 22451335 G A PDLIM2 Missense_Mutation p.G574E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 8 23167372 23167372 C T LOXL2 Silent p.L563L 0.35 TCGA-EE-A2A2-06 8 24181389 24181389 G A ADAM28 Missense_Mutation p.E255K 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 8 24193057 24193057 C T ADAM28 Silent p.F490F 0.33 TCGA-EE-A2A2-06 8 24193090 24193090 G A ADAM28 Silent p.K501K 0.35 TCGA-EE-A2A2-06 8 25365369 25365369 A G CDCA2 3'UTR 0.54 TCGA-EE-A2A2-06 8 26906400 26906400 T C MIR548H4 RNA 0.16 TCGA-EE-A2A2-06 8 27358512 27358512 G A EPHX2 Silent p.E57E 0.37 TCGA-EE-A2A2-06 8 28827942 28827942 C T HMBOX1 Missense_Mutation p.R136C 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2A2-06 8 3008941 3008941 C T CSMD1 Silent p.R2003R 0.40 TCGA-EE-A2A2-06 8 3047537 3047537 G A CSMD1 Silent p.F1765F 0.27 TCGA-EE-A2A2-06 8 38282210 38282210 G A FGFR1 Silent p.S282S 0.37 TCGA-EE-A2A2-06 8 39495136 39495136 G A ADAM18 Silent p.G247G 0.35 TCGA-EE-A2A2-06 8 39792675 39792675 G A IDO2 5'UTR 0.32 TCGA-EE-A2A2-06 8 41581085 41581085 C T ANK1 Missense_Mutation p.D293N 0.33 deleterious(0.04) probably_damaging(0.97) TCGA-EE-A2A2-06 8 42037570 42037570 T C PLAT Missense_Mutation p.K413E 0.37 deleterious(0.02) benign(0.224) TCGA-EE-A2A2-06 8 42623495 42623495 C T CHRNA6 Missense_Mutation p.G27S 0.40 tolerated(0.13) benign(0.13) TCGA-EE-A2A2-06 8 48508560 48508560 G A SPIDR Missense_Mutation p.E429K 0.31 tolerated(0.24) benign(0.297) TCGA-EE-A2A2-06 8 52232440 52232440 C T PXDNL 3'UTR 0.27 TCGA-EE-A2A2-06 8 55538048 55538048 G A RP1 Missense_Mutation p.E536K 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A2A2-06 8 56436754 56436754 C T XKR4 Nonsense_Mutation p.Q641* 0.38 TCGA-EE-A2A2-06 8 57228735 57228735 A G SDR16C5 Silent p.L58L 0.39 TCGA-EE-A2A2-06 8 57890662 57890662 A T IMPAD1 Missense_Mutation p.V198E 0.34 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A2-06 8 59499059 59499059 G A NSMAF Missense_Mutation p.P833S 0.39 tolerated(0.84) benign(0.002) TCGA-EE-A2A2-06 8 59764150 59764150 C T TOX Missense_Mutation p.G209E 0.27 tolerated(0.14) probably_damaging(0.997) TCGA-EE-A2A2-06 8 61654794 61654794 C T CHD7 Missense_Mutation p.S268F 0.43 possibly_damaging(0.485) TCGA-EE-A2A2-06 8 6690347 6690347 G A GS1-24F4.2 5'Flank 0.36 TCGA-EE-A2A2-06 8 67511375 67511375 A T MYBL1 Missense_Mutation p.N67K 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2A2-06 8 67592170 67592170 C A C8orf44 Missense_Mutation p.S154Y 0.31 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A2A2-06 8 70978537 70978537 T A PRDM14 Missense_Mutation p.K372N 0.40 deleterious(0.04) possibly_damaging(0.879) TCGA-EE-A2A2-06 8 71550843 71550843 C T LACTB2 Missense_Mutation p.E255K 0.36 tolerated(1) benign(0.001) TCGA-EE-A2A2-06 8 71556407 71556407 G A LACTB2 Missense_Mutation p.S162F 0.36 deleterious(0) probably_damaging(0.977) TCGA-EE-A2A2-06 8 71619189 71619189 G A XKR9 Silent p.R98R 0.24 TCGA-EE-A2A2-06 8 73993372 73993372 C T SBSPON Silent p.R97R 0.30 TCGA-EE-A2A2-06 8 74782503 74782503 C T UBE2W Splice_Site p.X45_splice 0.30 TCGA-EE-A2A2-06 8 75263640 75263640 G A GDAP1 Silent p.G83G 0.37 TCGA-EE-A2A2-06 8 75756225 75756225 G A PI15 Missense_Mutation p.E95K 0.28 tolerated(0.08) possibly_damaging(0.519) TCGA-EE-A2A2-06 8 79710383 79710383 G A IL7 Missense_Mutation p.S24L 0.37 deleterious(0) possibly_damaging(0.693) TCGA-EE-A2A2-06 8 86041490 86041490 A G LRRCC1 Missense_Mutation p.K501R 0.34 tolerated(0.27) benign(0.003) TCGA-EE-A2A2-06 8 87076749 87076749 C T PSKH2 Silent p.R99R 0.36 TCGA-EE-A2A2-06 8 90777694 90777694 T A RIPK2 Missense_Mutation p.N151K 0.35 deleterious(0.03) probably_damaging(1) TCGA-EE-A2A2-06 8 91094270 91094270 C T CALB1 Missense_Mutation p.R47Q 0.37 tolerated(0.49) probably_damaging(0.993) TCGA-EE-A2A2-06 8 94935236 94935236 C T PDP1 Nonsense_Mutation p.Q342* 0.39 TCGA-EE-A2A2-06 9 105767118 105767118 G A CYLC2 Missense_Mutation p.D108N 0.45 deleterious(0.04) probably_damaging(0.924) TCGA-EE-A2A2-06 9 112004017 112004017 G A EPB41L4B Intron 0.58 TCGA-EE-A2A2-06 9 117070023 117070023 G A COL27A1 Missense_Mutation p.G1728R 0.66 unknown(0) TCGA-EE-A2A2-06 9 117070024 117070024 G T COL27A1 Missense_Mutation p.G1728V 0.65 unknown(0) TCGA-EE-A2A2-06 9 117108961 117108961 G T AKNA Silent p.R1168R 0.58 TCGA-EE-A2A2-06 9 117108962 117108962 G T AKNA Silent p.L1167L 0.57 TCGA-EE-A2A2-06 9 125239279 125239279 G A OR1J1 Silent p.G309G 0.56 TCGA-EE-A2A2-06 9 12698617 12698617 C T TYRP1 Missense_Mutation p.S292F 0.42 deleterious(0.02) benign(0.05) TCGA-EE-A2A2-06 9 127253505 127253505 C T NR5A1 Silent p.V331V 0.69 TCGA-EE-A2A2-06 9 129643003 129643003 C T ZBTB34 Missense_Mutation p.P438L 0.74 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A2-06 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.66 tolerated_low_confidence(0.54) benign(0.005) TCGA-EE-A2A2-06 9 131885396 131885396 C T PPP2R4 Silent p.T65T 0.63 TCGA-EE-A2A2-06 9 134354730 134354730 C T PRRC2B Missense_Mutation p.T1617I 0.71 deleterious(0.02) benign(0.273) TCGA-EE-A2A2-06 9 134505629 134505629 G A RAPGEF1 Missense_Mutation p.P246L 0.63 tolerated(0.11) benign(0.037) TCGA-EE-A2A2-06 9 135374956 135374956 C T C9orf171 Missense_Mutation p.P201S 0.59 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A2-06 9 136215095 136215095 C T RPL7A 5'UTR 0.62 TCGA-EE-A2A2-06 9 137716551 137716551 G C COL5A1 Missense_Mutation p.V1602L 0.61 unknown(0) TCGA-EE-A2A2-06 9 140161789 140161789 C T NELFB Missense_Mutation p.P446S 0.64 tolerated(0.13) probably_damaging(0.975) TCGA-EE-A2A2-06 9 140161790 140161790 C T NELFB Missense_Mutation p.P446L 0.64 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A2A2-06 9 14722307 14722307 C T CER1 Missense_Mutation p.E122K 0.39 tolerated(0.26) benign(0.052) TCGA-EE-A2A2-06 9 17298398 17298398 T A CNTLN Intron 0.35 TCGA-EE-A2A2-06 9 17793432 17793432 C T SH3GL2 Missense_Mutation p.P266S 0.59 tolerated(0.65) benign(0) TCGA-EE-A2A2-06 9 17793433 17793433 C T SH3GL2 Missense_Mutation p.P266L 0.56 tolerated(0.26) benign(0) TCGA-EE-A2A2-06 9 21187427 21187427 C T IFNA4 Missense_Mutation p.R35K 0.36 tolerated(0.46) benign(0.176) TCGA-EE-A2A2-06 9 21385088 21385088 C T IFNA2 Missense_Mutation p.E81K 0.38 deleterious(0.01) possibly_damaging(0.783) TCGA-EE-A2A2-06 9 26962038 26962038 C T IFT74 Missense_Mutation p.P25S 0.37 tolerated(0.12) benign(0.014) TCGA-EE-A2A2-06 9 27330576 27330576 G A MOB3B 3'UTR 0.39 TCGA-EE-A2A2-06 9 33311115 33311115 C T NFX1 Missense_Mutation p.P463L 0.36 deleterious(0) probably_damaging(0.979) TCGA-EE-A2A2-06 9 33675973 33675973 G A PTENP1 RNA 0.35 TCGA-EE-A2A2-06 9 33797945 33797945 G A PRSS3 Missense_Mutation p.D164N 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2A2-06 9 34625778 34625778 C T ARID3C Missense_Mutation p.E118K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2A2-06 9 34709556 34709556 C T CCL21 Silent p.R104R 0.34 TCGA-EE-A2A2-06 9 35077033 35077033 C T FANCG Missense_Mutation p.G238S 0.38 tolerated(0.21) benign(0.166) TCGA-EE-A2A2-06 9 37737191 37737191 C T FRMPD1 Silent p.F500F 0.39 TCGA-EE-A2A2-06 9 38414147 38414147 C T IGFBPL1 Missense_Mutation p.V172M 0.31 deleterious(0) probably_damaging(0.983) TCGA-EE-A2A2-06 9 43627001 43627001 C T SPATA31A6 Silent p.Q562Q 0.58 TCGA-EE-A2A2-06 9 4573943 4573943 G A SLC1A1 Silent p.G268G 0.28 TCGA-EE-A2A2-06 9 71509297 71509297 G A PIP5K1B Missense_Mutation p.G172R 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 9 72131545 72131545 C T APBA1 Silent p.Q194Q 0.71 TCGA-EE-A2A2-06 9 77275628 77275628 G A RORB Missense_Mutation p.E245K 0.67 deleterious(0) probably_damaging(0.926) TCGA-EE-A2A2-06 9 78803528 78803528 G A PCSK5 Missense_Mutation p.D773N 0.53 tolerated(0.42) benign(0.049) TCGA-EE-A2A2-06 9 8331706 8331706 G A PTPRD Nonsense_Mutation p.Q1804* 0.38 TCGA-EE-A2A2-06 9 8499786 8499786 A C PTPRD Missense_Mutation p.V728G 0.42 deleterious(0) possibly_damaging(0.799) TCGA-EE-A2A2-06 9 88667464 88667464 G A GOLM1 Nonsense_Mutation p.R118* 0.64 TCGA-EE-A2A2-06 9 97823036 97823036 C T C9orf3 Missense_Mutation p.P726S 0.53 tolerated(0.61) benign(0.005) TCGA-EE-A2A2-06 9 99150434 99150434 A G ZNF367 3'UTR 0.72 TCGA-EE-A2A2-06 9 99150444 99150444 T C ZNF367 3'UTR 0.73 TCGA-EE-A2A2-06 9 99582013 99582013 C T ZNF782 Missense_Mutation p.G98S 0.63 tolerated(0.72) benign(0.007) TCGA-EE-A2A2-06 X 100349860 100349860 C T TMEM35 Missense_Mutation p.S140F 0.78 deleterious(0.05) benign(0.034) TCGA-EE-A2A2-06 X 100871633 100871633 G A ARMCX6 5'UTR 0.85 TCGA-EE-A2A2-06 X 103268125 103268125 C T H2BFWT Silent p.T36T 0.39 TCGA-EE-A2A2-06 X 10427726 10427726 C T MID1 Silent p.A469A 0.82 TCGA-EE-A2A2-06 X 107418430 107418430 G A COL4A6 Missense_Mutation p.P950L 0.77 possibly_damaging(0.777) TCGA-EE-A2A2-06 X 107418434 107418434 T G COL4A6 Missense_Mutation p.N949H 0.74 probably_damaging(0.968) TCGA-EE-A2A2-06 X 110644344 110644344 C T DCX Silent p.K274K 0.84 TCGA-EE-A2A2-06 X 114141940 114141940 C T HTR2C Missense_Mutation p.P447S 0.74 tolerated_low_confidence(0.8) benign(0) TCGA-EE-A2A2-06 X 118215320 118215320 C T KIAA1210 Nonsense_Mutation p.W1701* 0.78 TCGA-EE-A2A2-06 X 120181511 120181511 G A GLUD2 5'UTR 0.75 TCGA-EE-A2A2-06 X 123220440 123220440 C T STAG2 Nonsense_Mutation p.R1033* 0.74 TCGA-EE-A2A2-06 X 129053189 129053189 C T UTP14A Silent p.L192L 0.80 TCGA-EE-A2A2-06 X 129190019 129190019 G A BCORL1 Missense_Mutation p.G1682S 0.78 benign(0.109) TCGA-EE-A2A2-06 X 130222806 130222806 T G ARHGAP36 3'UTR 0.76 TCGA-EE-A2A2-06 X 130408837 130408837 G A IGSF1 Missense_Mutation p.P1168S 0.74 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A2-06 X 1314897 1314897 C T CRLF2 Nonsense_Mutation p.W255* 0.53 TCGA-EE-A2A2-06 X 135429626 135429626 T G GPR112 Nonsense_Mutation p.L1254* 0.76 TCGA-EE-A2A2-06 X 13681193 13681193 C T TCEANC Missense_Mutation p.S219F 0.74 tolerated(0.07) benign(0.022) TCGA-EE-A2A2-06 X 138864889 138864889 T A ATP11C Splice_Site p.X594_splice 0.81 TCGA-EE-A2A2-06 X 140996573 140996573 A T MAGEC1 Missense_Mutation p.E1128V 0.81 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A2A2-06 X 141291749 141291749 A T MAGEC2 Missense_Mutation p.F9I 0.70 tolerated_low_confidence(0.16) possibly_damaging(0.587) TCGA-EE-A2A2-06 X 142717675 142717675 T G SLITRK4 Missense_Mutation p.K417T 0.05 deleterious(0) benign(0.051) TCGA-EE-A2A2-06 X 150868507 150868507 G A PRRG3 Missense_Mutation p.R16Q 0.75 deleterious(0.04) benign(0.045) TCGA-EE-A2A2-06 X 150869277 150869277 G A PRRG3 Silent p.Q156Q 0.67 TCGA-EE-A2A2-06 X 150869278 150869278 G T PRRG3 Missense_Mutation p.V157L 0.67 tolerated(0.72) benign(0.003) TCGA-EE-A2A2-06 X 151123218 151123218 G T GABRE Missense_Mutation p.F492L 0.54 deleterious(0) probably_damaging(0.973) TCGA-EE-A2A2-06 X 152956946 152956946 C T SLC6A8 Silent p.S194S 0.77 TCGA-EE-A2A2-06 X 152956947 152956947 C T SLC6A8 Silent p.L195L 0.77 TCGA-EE-A2A2-06 X 153678615 153678615 C T FAM50A Missense_Mutation p.P320L 0.77 deleterious(0) probably_damaging(1) TCGA-EE-A2A2-06 X 153678616 153678616 C T FAM50A Silent p.P320P 0.77 TCGA-EE-A2A2-06 X 154159546 154159546 G A F8 Missense_Mutation p.S840L 0.71 tolerated(0.34) benign(0.002) TCGA-EE-A2A2-06 X 15582236 15582236 G A ACE2 Silent p.S740S 0.71 TCGA-EE-A2A2-06 X 1742137 1742137 G A ASMT Missense_Mutation p.G59R 0.60 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A2-06 X 18260653 18260653 T G SCML2 Missense_Mutation p.D627A 0.89 deleterious(0) possibly_damaging(0.655) TCGA-EE-A2A2-06 X 27998066 27998066 G T DCAF8L1 Silent p.V462V 0.62 TCGA-EE-A2A2-06 X 2951408 2951408 C T ARSH Silent p.I557I 0.84 TCGA-EE-A2A2-06 X 3238901 3238901 G A MXRA5 Missense_Mutation p.P1609S 0.76 deleterious(0) possibly_damaging(0.798) TCGA-EE-A2A2-06 X 34149124 34149124 G A FAM47A Silent p.L424L 0.77 TCGA-EE-A2A2-06 X 34149162 34149162 G A FAM47A Missense_Mutation p.R412C 0.75 tolerated(0.21) benign(0.01) TCGA-EE-A2A2-06 X 37027310 37027310 G A FAM47C Missense_Mutation p.G276E 0.75 tolerated(1) benign(0.002) TCGA-EE-A2A2-06 X 37027311 37027311 G C FAM47C Silent p.G276G 0.75 TCGA-EE-A2A2-06 X 37028253 37028253 G A FAM47C Silent p.R590R 0.76 TCGA-EE-A2A2-06 X 45059964 45059964 G A CXorf36 Silent p.S36S 0.84 TCGA-EE-A2A2-06 X 47487623 47487623 G A CFP Missense_Mutation p.S94F 0.85 deleterious(0.04) possibly_damaging(0.749) TCGA-EE-A2A2-06 X 47837015 47837015 G A ZNF182 Silent p.P157P 0.66 TCGA-EE-A2A2-06 X 48649640 48649640 G A GATA1 Missense_Mutation p.D42N 0.82 tolerated_low_confidence(0.19) probably_damaging(0.956) TCGA-EE-A2A2-06 X 48934105 48934105 G A WDR45 Silent p.T141T 0.81 TCGA-EE-A2A2-06 X 50094252 50094252 G A CCNB3 Missense_Mutation p.E1325K 0.79 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A2-06 X 52841586 52841586 G A XAGE5 5'UTR 0.57 TCGA-EE-A2A2-06 X 52893806 52893806 C T XAGE3 Missense_Mutation p.G104E 0.72 tolerated(0.35) probably_damaging(0.986) TCGA-EE-A2A2-06 X 54496554 54496554 G A FGD1 Silent p.S332S 0.80 TCGA-EE-A2A2-06 X 54777626 54777626 G A ITIH6 Silent p.A1180A 0.60 TCGA-EE-A2A2-06 X 54956372 54956372 C T TRO Missense_Mutation p.A1072V 0.85 tolerated(0.09) benign(0.168) TCGA-EE-A2A2-06 X 5821747 5821747 C T NLGN4X Silent p.K324K 0.70 TCGA-EE-A2A2-06 X 64744894 64744894 G A LAS1L Silent p.F331F 0.81 TCGA-EE-A2A2-06 X 77276522 77276522 G A ATP7A Silent p.L954L 0.76 TCGA-EE-A2A2-06 X 83400545 83400545 G A RPS6KA6 Silent p.L148L 0.73 TCGA-EE-A2A2-06 X 9914785 9914785 C T SHROOM2 Silent p.D1553D 0.81 TCGA-EE-A2A5-06 10 117278772 117278772 G A ATRNL1 Splice_Site p.X1219_splice 0.74 TCGA-EE-A2A5-06 10 26455081 26455081 G A MYO3A Missense_Mutation p.D1029N 0.81 deleterious(0.02) benign(0.052) TCGA-EE-A2A5-06 10 45652287 45652287 G A RP11-445N18.7 RNA 0.73 TCGA-EE-A2A5-06 10 6506314 6506340 TGGTACATTAAGTCCCCTCCGTTGAGG GGGACT PRKCQ Nonsense_Mutation p.Y460_H469delins* 0.53 TCGA-EE-A2A5-06 10 78669767 78669767 C T KCNMA1 Missense_Mutation p.G1018E 0.57 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A5-06 10 78669768 78669768 C T KCNMA1 Missense_Mutation p.G1018R 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 10 96698565 96698565 C T CYP2C9 Silent p.I42I 0.75 TCGA-EE-A2A5-06 11 101323787 101323787 G A TRPC6 Missense_Mutation p.L899F 0.77 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2A5-06 11 101773372 101773372 C T ANGPTL5 Missense_Mutation p.G174R 0.80 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A2A5-06 11 112064218 112064218 G A BCO2 Silent p.G105G 0.89 TCGA-EE-A2A5-06 11 120980167 120980167 G A TECTA Nonsense_Mutation p.W149* 0.77 TCGA-EE-A2A5-06 11 121016325 121016325 C T TECTA Missense_Mutation p.S1202F 0.82 deleterious(0.02) benign(0.299) TCGA-EE-A2A5-06 11 122830109 122830109 G A C11orf63 Missense_Mutation p.E765K 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 11 134119756 134119756 T C THYN1 Missense_Mutation p.N117S 0.70 tolerated(0.05) possibly_damaging(0.784) TCGA-EE-A2A5-06 11 134131569 134131569 C G ACAD8 Intron 0.93 TCGA-EE-A2A5-06 11 134151280 134151280 G A GLB1L3 Silent p.P124P 0.74 TCGA-EE-A2A5-06 11 16776499 16776499 G A C11orf58 Missense_Mutation p.D134N 0.87 tolerated(0.09) benign(0.214) TCGA-EE-A2A5-06 11 18955429 18955429 C T MRGPRX1 Silent p.V301V 0.77 TCGA-EE-A2A5-06 11 31086668 31086668 C T DCDC1 Silent p.E777E 0.94 TCGA-EE-A2A5-06 11 55110739 55110739 G A OR4A16 Silent p.V21V 0.88 TCGA-EE-A2A5-06 11 56431525 56431525 C T OR5AR1 Missense_Mutation p.R122C 0.83 deleterious(0) probably_damaging(0.973) TCGA-EE-A2A5-06 11 57077266 57077266 C T TNKS1BP1 Silent p.Q973Q 0.83 TCGA-EE-A2A5-06 11 5905702 5905702 C T OR52E4 Silent p.P60P 0.83 TCGA-EE-A2A5-06 11 59245400 59245400 C T OR4D10 Silent p.L166L 0.76 TCGA-EE-A2A5-06 11 77835129 77835129 G A ALG8 Silent p.T102T 0.82 TCGA-EE-A2A5-06 11 85435888 85435888 G A SYTL2 Silent p.L538L 0.75 TCGA-EE-A2A5-06 11 88300543 88300543 C T GRM5 Missense_Mutation p.E770K 0.80 deleterious(0) probably_damaging(0.971) TCGA-EE-A2A5-06 12 104046452 104046452 G A STAB2 Missense_Mutation p.G459E 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 12 117922329 117922329 C T KSR2 Missense_Mutation p.G781E 1.00 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2A5-06 12 122295271 122295271 G A HPD Missense_Mutation p.S54F 0.76 deleterious(0.04) benign(0.124) TCGA-EE-A2A5-06 12 126138586 126138586 G A TMEM132B Missense_Mutation p.G856E 0.91 tolerated(0.39) benign(0.023) TCGA-EE-A2A5-06 12 18891278 18891278 G A CAPZA3 Missense_Mutation p.E26K 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 12 27465494 27465494 C T STK38L Nonsense_Mutation p.R136* 0.54 TCGA-EE-A2A5-06 12 2760885 2760885 G A CACNA1C Missense_Mutation p.R1390H 0.36 deleterious(0.02) probably_damaging(0.916) TCGA-EE-A2A5-06 12 47471960 47471960 G A AMIGO2 Nonsense_Mutation p.Q276* 0.93 TCGA-EE-A2A5-06 12 50189043 50189043 G A NCKAP5L Missense_Mutation p.P867L 0.66 deleterious(0.01) benign(0.246) TCGA-EE-A2A5-06 12 5020678 5020678 G A KCNA1 Missense_Mutation p.G45E 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 12 56575587 56575587 G A SMARCC2 Silent p.T247T 0.82 TCGA-EE-A2A5-06 12 7639195 7639195 C T CD163 Missense_Mutation p.M786I 0.36 tolerated(0.24) benign(0.002) TCGA-EE-A2A5-06 12 81568625 81568625 G A ACSS3 Missense_Mutation p.G386E 0.89 tolerated(0.2) benign(0.075) TCGA-EE-A2A5-06 12 96104261 96104261 G A NTN4 Missense_Mutation p.R380C 0.57 deleterious(0) probably_damaging(0.988) TCGA-EE-A2A5-06 12 99837454 99837454 G A ANKS1B Silent p.P524P 0.66 TCGA-EE-A2A5-06 13 109562393 109562393 C T MYO16 Missense_Mutation p.S585L 0.37 tolerated(0.35) benign(0.178) TCGA-EE-A2A5-06 13 111141854 111141854 C T COL4A2 Silent p.F1090F 0.34 TCGA-EE-A2A5-06 13 28631577 28631577 A C FLT3 Missense_Mutation p.L131V 0.44 tolerated(0.62) benign(0) TCGA-EE-A2A5-06 13 36776216 36776216 G A SOHLH2 Silent p.I98I 0.43 TCGA-EE-A2A5-06 13 52544779 52544779 C T ATP7B Silent p.G464G 0.41 TCGA-EE-A2A5-06 13 52544780 52544780 C T ATP7B Missense_Mutation p.G464E 0.41 tolerated(0.29) benign(0.001) TCGA-EE-A2A5-06 13 77671825 77671825 G A MYCBP2 Missense_Mutation p.P3117L 0.52 benign(0.031) TCGA-EE-A2A5-06 13 92345703 92345703 G A GPC5 Missense_Mutation p.M196I 0.50 tolerated(0.27) benign(0.026) TCGA-EE-A2A5-06 14 19553803 19553803 G A POTEG Missense_Mutation p.M129I 0.15 tolerated(0.09) benign(0.001) TCGA-EE-A2A5-06 14 20216515 20216515 C T OR4Q3 Missense_Mutation p.P310L 0.36 tolerated_low_confidence(1) benign(0) TCGA-EE-A2A5-06 14 20248760 20248760 C T OR4M1 Silent p.S93S 0.40 TCGA-EE-A2A5-06 14 24885032 24885032 C T NYNRIN Silent p.A1359A 0.77 TCGA-EE-A2A5-06 14 61512123 61512123 C T SLC38A6 Silent p.P268P 0.61 TCGA-EE-A2A5-06 14 71518712 71518712 C T PCNX Silent p.F1520F 0.30 TCGA-EE-A2A5-06 14 73989840 73989840 T C HEATR4 Missense_Mutation p.K6R 0.75 tolerated_low_confidence(0.08) benign(0.008) TCGA-EE-A2A5-06 14 89163205 89163205 G A EML5 Missense_Mutation p.A777V 0.86 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A2A5-06 15 42058433 42058433 T C MGA Missense_Mutation p.V2718A 0.80 tolerated(0.22) benign(0.003) TCGA-EE-A2A5-06 15 84287069 84287069 C T SH3GL3 3'UTR 0.80 TCGA-EE-A2A5-06 15 91512747 91512747 T C PRC1 Missense_Mutation p.Y560C 0.81 tolerated(0.42) benign(0.004) TCGA-EE-A2A5-06 16 10567374 10567374 C T ATF7IP2 Missense_Mutation p.P489S 0.34 tolerated(0.29) benign(0.131) TCGA-EE-A2A5-06 16 20494445 20494445 G A ACSM2A Silent p.K525K 0.30 TCGA-EE-A2A5-06 16 22237194 22237194 G A EEF2K Silent p.S48S 0.28 TCGA-EE-A2A5-06 16 2369591 2369591 C T ABCA3 Silent p.R288R 0.36 TCGA-EE-A2A5-06 16 30748978 30748978 A G SRCAP Silent p.S2539S 0.35 TCGA-EE-A2A5-06 16 3255141 3255141 G A OR1F1 Missense_Mutation p.G299R 0.55 tolerated(0.2) benign(0.008) TCGA-EE-A2A5-06 16 50388812 50388812 G A BRD7 Nonsense_Mutation p.R94* 0.77 TCGA-EE-A2A5-06 16 51173852 51173852 G A SALL1 Missense_Mutation p.P761S 0.76 deleterious(0) probably_damaging(0.978) TCGA-EE-A2A5-06 16 58616753 58616753 C A CNOT1 Nonsense_Mutation p.G330* 0.09 TCGA-EE-A2A5-06 16 68405393 68405393 C T SMPD3 Missense_Mutation p.G231E 0.60 tolerated(0.24) benign(0.004) TCGA-EE-A2A5-06 16 919955 919955 G A LMF1 Silent p.P448P 0.31 TCGA-EE-A2A5-06 17 10404793 10404793 C T MYH1 Silent p.E1124E 1.00 TCGA-EE-A2A5-06 17 10541556 10541556 T C MYH3 Missense_Mutation p.D1178G 0.69 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A5-06 17 12656088 12656088 G A MYOCD Missense_Mutation p.E495K 0.75 deleterious(0) benign(0.423) TCGA-EE-A2A5-06 17 30980903 30980903 C T MYO1D Silent p.K851K 0.54 TCGA-EE-A2A5-06 17 38816309 38816309 G A KRT222 Missense_Mutation p.L126F 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 17 40010189 40010189 G A KLHL11 Missense_Mutation p.L644F 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2A5-06 17 41960580 41960580 G A MPP2 Silent p.P98P 0.58 TCGA-EE-A2A5-06 17 4443768 4443768 C T MYBBP1A Silent p.L1103L 0.49 TCGA-EE-A2A5-06 17 45368378 45368378 C T ITGB3 Missense_Mutation p.S395F 0.71 tolerated(0.2) benign(0.099) TCGA-EE-A2A5-06 17 4720032 4720032 C T PLD2 Missense_Mutation p.P525S 0.19 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2A5-06 17 60483897 60483897 C T EFCAB3 Missense_Mutation p.T234I 0.75 tolerated(0.17) benign(0.073) TCGA-EE-A2A5-06 17 7221919 7221919 A G NEURL4 Silent p.S1253S 0.17 TCGA-EE-A2A5-06 17 72848636 72848636 G A GRIN2C Missense_Mutation p.H172Y 0.70 tolerated(1) benign(0.004) TCGA-EE-A2A5-06 17 77809476 77809476 C T CBX4 Missense_Mutation p.R72K 0.47 deleterious(0.01) possibly_damaging(0.525) TCGA-EE-A2A5-06 17 77809477 77809477 T G CBX4 Silent p.R72R 0.47 TCGA-EE-A2A5-06 17 80400218 80400218 G A HEXDC Missense_Mutation p.C503Y 0.24 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A2A5-06 17 8049948 8049948 G A PER1 Missense_Mutation p.S624F 0.84 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 18 22807639 22807639 A T ZNF521 Missense_Mutation p.D81E 0.42 deleterious_low_confidence(0.01) benign(0.15) TCGA-EE-A2A5-06 18 28934521 28934521 G A DSG1 Missense_Mutation p.E788K 0.46 tolerated(0.67) benign(0.076) TCGA-EE-A2A5-06 18 29044140 29044140 C A DSG3 Missense_Mutation p.H356N 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 18 42531250 42531250 C T SETBP1 Missense_Mutation p.H649Y 0.33 deleterious(0.02) possibly_damaging(0.727) TCGA-EE-A2A5-06 18 50705392 50705392 G A DCC Silent p.K493K 0.57 TCGA-EE-A2A5-06 18 56246693 56246693 C T ALPK2 Missense_Mutation p.G439R 0.40 tolerated(0.06) benign(0.105) TCGA-EE-A2A5-06 18 60241538 60241538 C T ZCCHC2 Missense_Mutation p.P742S 0.33 tolerated(0.97) benign(0) TCGA-EE-A2A5-06 18 7043305 7043305 C T LAMA1 Missense_Mutation p.G359E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 18 72775833 72775833 C G ZNF407 Silent p.A2052A 0.38 TCGA-EE-A2A5-06 18 76757174 76757174 C T SALL3 Missense_Mutation p.P1252L 0.29 deleterious(0) possibly_damaging(0.573) TCGA-EE-A2A5-06 19 11283753 11283753 A G KANK2 Silent p.I713I 0.57 TCGA-EE-A2A5-06 19 11915421 11915421 C T ZNF491 5'UTR 0.34 TCGA-EE-A2A5-06 19 12637951 12637951 A G ZNF564 Missense_Mutation p.V324A 0.59 tolerated(0.05) benign(0.115) TCGA-EE-A2A5-06 19 1428952 1428957 GGCCAG - DAZAP1 In_Frame_Del p.G220_Q221del 0.61 TCGA-EE-A2A5-06 19 14938426 14938426 G A OR7A5 Missense_Mutation p.P210S 0.40 tolerated_low_confidence(0.13) benign(0.192) TCGA-EE-A2A5-06 19 16514715 16514715 T C EPS15L1 Silent p.Q485Q 0.17 TCGA-EE-A2A5-06 19 17831749 17831749 C T MAP1S Silent p.I41I 0.64 TCGA-EE-A2A5-06 19 35232544 35232544 C T ZNF181 Missense_Mutation p.L420F 0.47 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A5-06 19 39805674 39805674 G A LRFN1 Silent p.I101I 0.50 TCGA-EE-A2A5-06 19 43430713 43430713 G A PSG7 Missense_Mutation p.R289C 0.50 deleterious(0.01) possibly_damaging(0.594) TCGA-EE-A2A5-06 19 44891168 44891168 G A ZNF285 Silent p.S413S 0.53 TCGA-EE-A2A5-06 19 45515450 45515450 C T RELB Silent p.F140F 0.27 TCGA-EE-A2A5-06 19 50826854 50826854 G A KCNC3 Silent p.I452I 0.41 TCGA-EE-A2A5-06 19 51961271 51961271 A T SIGLEC8 Missense_Mutation p.F124Y 0.39 deleterious(0.05) possibly_damaging(0.689) TCGA-EE-A2A5-06 19 54074872 54074872 C T ZNF331 Silent p.F8F 0.52 TCGA-EE-A2A5-06 19 55290098 55290098 A G KIR2DL1 Silent p.E233E 0.26 TCGA-EE-A2A5-06 19 55993031 55993031 C T ZNF628 Silent p.F157F 0.71 TCGA-EE-A2A5-06 19 58420069 58420069 C A ZNF417 Missense_Mutation p.G526V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 19 7831617 7831617 G A CLEC4M Missense_Mutation p.R287Q 0.38 tolerated(0.09) probably_damaging(0.994) TCGA-EE-A2A5-06 19 8182136 8182136 A C FBN3 Missense_Mutation p.V1168G 0.47 tolerated(0.33) benign(0.001) TCGA-EE-A2A5-06 19 8661232 8661232 G A ADAMTS10 Silent p.G383G 0.31 TCGA-EE-A2A5-06 19 9060089 9060089 C T MUC16 Missense_Mutation p.M9119I 0.29 unknown(0) TCGA-EE-A2A5-06 19 9085016 9085016 G A MUC16 Missense_Mutation p.P2267S 0.43 unknown(0) TCGA-EE-A2A5-06 1 110766492 110766492 G A KCNC4 Missense_Mutation p.E529K 0.50 deleterious(0.02) benign(0.322) TCGA-EE-A2A5-06 1 110766493 110766493 A C KCNC4 Missense_Mutation p.E529A 0.46 deleterious(0.02) benign(0.01) TCGA-EE-A2A5-06 1 111964047 111964047 G A OVGP1 Missense_Mutation p.P252S 0.44 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A2A5-06 1 11300438 11300438 G A MTOR Missense_Mutation p.L570F 0.54 tolerated(0.1) benign(0.003) TCGA-EE-A2A5-06 1 115151336 115151336 G A DENND2C Missense_Mutation p.P510S 0.52 deleterious(0) possibly_damaging(0.562) TCGA-EE-A2A5-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.59 tolerated(0.06) benign(0.006) TCGA-EE-A2A5-06 1 11562082 11562082 C T PTCHD2 Missense_Mutation p.P345S 0.73 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A5-06 1 117122036 117122036 G A IGSF3 Silent p.I1124I 0.24 TCGA-EE-A2A5-06 1 120496243 120496243 G A NOTCH2 Missense_Mutation p.S763L 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 1 13001275 13001275 C T PRAMEF6 Silent p.Q136Q 0.25 TCGA-EE-A2A5-06 1 150128302 150128309 GACTATGA - PLEKHO1 Frame_Shift_Del p.D74Efs*3 0.18 TCGA-EE-A2A5-06 1 151316936 151316936 G A RFX5 Missense_Mutation p.P144S 0.74 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 1 151773843 151773843 G A LINGO4 Silent p.S446S 0.19 TCGA-EE-A2A5-06 1 153409600 153409600 C T S100A7L2 Silent p.G91G 0.31 TCGA-EE-A2A5-06 1 153409601 153409601 C T S100A7L2 Missense_Mutation p.G91E 0.31 deleterious(0) probably_damaging(0.988) TCGA-EE-A2A5-06 1 155258275 155258275 C T HCN3 3'UTR 0.22 TCGA-EE-A2A5-06 1 158517836 158517836 C T OR6Y1 Silent p.L20L 0.23 TCGA-EE-A2A5-06 1 159284411 159284411 G A OR10J3 Silent p.L13L 0.63 TCGA-EE-A2A5-06 1 159897984 159897984 C T IGSF9 Nonsense_Mutation p.W1065* 0.60 TCGA-EE-A2A5-06 1 160604553 160604553 G A SLAMF1 Missense_Mutation p.P184S 0.68 tolerated(0.5) possibly_damaging(0.772) TCGA-EE-A2A5-06 1 167839635 167839635 C T ADCY10 Silent p.E492E 0.39 TCGA-EE-A2A5-06 1 175116091 175116091 G A TNN Missense_Mutation p.G1262R 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 1 182898872 182898872 G A SHCBP1L Silent p.F364F 0.26 TCGA-EE-A2A5-06 1 18618468 18618468 C T IGSF21 Nonsense_Mutation p.Q98* 0.30 TCGA-EE-A2A5-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.47 tolerated(0.08) benign(0.001) TCGA-EE-A2A5-06 1 20440583 20440583 G A PLA2G2D 3'UTR 0.81 TCGA-EE-A2A5-06 1 207651288 207651288 G A CR2 Silent p.R987R 0.39 TCGA-EE-A2A5-06 1 207758168 207758168 G A CR1 Missense_Mutation p.G1826E 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A5-06 1 208073226 208073226 C T CD34 Missense_Mutation p.G68R 0.28 tolerated(0.21) probably_damaging(0.999) TCGA-EE-A2A5-06 1 209796330 209796330 C T LAMB3 Silent p.Q851Q 0.25 TCGA-EE-A2A5-06 1 214818199 214818199 C T CENPF Silent p.F1762F 0.39 TCGA-EE-A2A5-06 1 215260014 215260014 T G KCNK2 Missense_Mutation p.L117R 0.50 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2A5-06 1 215260015 215260015 C A KCNK2 Silent p.L117L 0.52 TCGA-EE-A2A5-06 1 21546608 21546608 C T ECE1 Missense_Mutation p.R718H 0.28 deleterious(0.05) possibly_damaging(0.848) TCGA-EE-A2A5-06 1 222695786 222695786 C T HHIPL2 3'UTR 0.20 TCGA-EE-A2A5-06 1 240071054 240071054 G A CHRM3 Silent p.T101T 0.40 TCGA-EE-A2A5-06 1 248685026 248685026 C T OR2G6 Missense_Mutation p.L27F 0.47 tolerated(0.07) benign(0.335) TCGA-EE-A2A5-06 1 29064819 29064819 T A YTHDF2 Missense_Mutation p.F34Y 0.63 deleterious(0.01) possibly_damaging(0.715) TCGA-EE-A2A5-06 1 3425709 3425709 C T MEGF6 Silent p.Q486Q 0.27 TCGA-EE-A2A5-06 1 37356687 37356687 G A GRIK3 Silent p.F42F 0.24 TCGA-EE-A2A5-06 1 40775612 40775612 C T COL9A2 Missense_Mutation p.E282K 0.26 tolerated(0.95) benign(0) TCGA-EE-A2A5-06 1 44877799 44877799 G A RNF220 Missense_Mutation p.M10I 0.29 deleterious(0) probably_damaging(0.914) TCGA-EE-A2A5-06 1 54417850 54417850 G A LRRC42 Missense_Mutation p.E60K 0.30 tolerated(0.25) probably_damaging(0.917) TCGA-EE-A2A5-06 1 54661314 54661314 G A CYB5RL 5'UTR 0.32 TCGA-EE-A2A5-06 1 55548966 55548966 C T USP24 Silent p.G2318G 0.25 TCGA-EE-A2A5-06 1 57221585 57221585 G A C1orf168 Missense_Mutation p.P372S 0.66 tolerated(0.4) benign(0.146) TCGA-EE-A2A5-06 1 57611077 57611077 C T DAB1 Silent p.L31L 0.20 TCGA-EE-A2A5-06 1 89414899 89414899 A C CCBL2 Missense_Mutation p.F339C 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 1 94027810 94027810 C T BCAR3 Silent p.Q822Q 0.17 TCGA-EE-A2A5-06 1 94995953 94995953 C T F3 3'UTR 0.27 TCGA-EE-A2A5-06 20 1162070 1162070 A T TMEM74B Missense_Mutation p.S65T 0.51 tolerated(0.54) benign(0.009) TCGA-EE-A2A5-06 20 14307027 14307027 G A FLRT3 Missense_Mutation p.P376S 0.52 tolerated(0.09) benign(0.341) TCGA-EE-A2A5-06 20 16493521 16493521 C T KIF16B Silent p.R132R 0.32 TCGA-EE-A2A5-06 20 16493522 16493522 C T KIF16B Missense_Mutation p.R132Q 0.32 tolerated(0.08) benign(0.013) TCGA-EE-A2A5-06 20 29993946 29993946 G A DEFB121 Missense_Mutation p.L4F 0.32 tolerated(0.4) unknown(0) TCGA-EE-A2A5-06 20 30919052 30919052 C T KIF3B Missense_Mutation p.S725F 0.43 tolerated(0.08) possibly_damaging(0.485) TCGA-EE-A2A5-06 20 31673890 31673890 G A BPIFB4 Missense_Mutation p.M282I 0.48 deleterious(0.03) possibly_damaging(0.845) TCGA-EE-A2A5-06 20 32251364 32251364 G A C20orf144 Silent p.L51L 0.43 TCGA-EE-A2A5-06 20 32251365 32251365 G A C20orf144 Missense_Mutation p.D52N 0.43 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A2A5-06 20 35717524 35717524 C T RBL1 Missense_Mutation p.G53E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 20 40747076 40747076 G A PTPRT Silent p.I983I 0.39 TCGA-EE-A2A5-06 20 5904645 5904645 G A CHGB Missense_Mutation p.E619K 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 21 15013801 15013801 G A POTED Missense_Mutation p.E557K 0.42 deleterious(0) benign(0.04) TCGA-EE-A2A5-06 21 30252217 30252217 G A N6AMT1 Missense_Mutation p.P124L 0.35 probably_damaging(0.992) TCGA-EE-A2A5-06 21 32185278 32185278 G A KRTAP8-1 3'UTR 0.31 TCGA-EE-A2A5-06 21 33370979 33370979 G A HUNK Missense_Mutation p.G543R 0.42 tolerated_low_confidence(0.14) benign(0.246) TCGA-EE-A2A5-06 21 34660416 34660416 C T IL10RB Silent p.V218V 0.31 TCGA-EE-A2A5-06 21 34660417 34660417 C T IL10RB Missense_Mutation p.P219S 0.32 tolerated(0.1) benign(0.109) TCGA-EE-A2A5-06 21 43547863 43547863 C T UMODL1 Silent p.S1332S 0.47 TCGA-EE-A2A5-06 21 45708302 45708302 G A AIRE Missense_Mutation p.A205T 0.41 tolerated(0.08) probably_damaging(0.98) TCGA-EE-A2A5-06 21 45795868 45795868 C T TRPM2 Silent p.F308F 0.33 TCGA-EE-A2A5-06 21 46021513 46021513 C T KRTAP10-7 Missense_Mutation p.P331L 0.34 deleterious(0.03) unknown(0) TCGA-EE-A2A5-06 22 20937220 20937220 C T MED15 Silent p.F501F 0.23 TCGA-EE-A2A5-06 22 21363406 21363406 C T AC002472.1 5'Flank 0.28 TCGA-EE-A2A5-06 22 24086677 24086677 G A ZNF70 Silent p.I217I 0.58 TCGA-EE-A2A5-06 22 24108109 24108109 T C CHCHD10 3'UTR 0.23 TCGA-EE-A2A5-06 22 24379451 24379451 C T GSTT1 Silent p.Q87Q 0.71 TCGA-EE-A2A5-06 22 25243717 25243717 G A SGSM1 Missense_Mutation p.D86N 0.33 deleterious(0.04) benign(0.063) TCGA-EE-A2A5-06 22 26422661 26422661 G A MYO18B Missense_Mutation p.E2241K 0.30 tolerated(0.32) benign(0.026) TCGA-EE-A2A5-06 22 26829652 26829652 C G ASPHD2 Missense_Mutation p.S24C 0.62 tolerated_low_confidence(0.2) benign(0) TCGA-EE-A2A5-06 22 30691757 30691757 G A TBC1D10A Missense_Mutation p.H172Y 0.50 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A5-06 22 32879881 32879881 C T FBXO7 Intron 0.21 TCGA-EE-A2A5-06 22 35661464 35661464 C T HMGXB4 Silent p.G361G 0.21 TCGA-EE-A2A5-06 22 36922128 36922128 G A EIF3D Missense_Mutation p.S14L 0.33 tolerated(0.22) benign(0.009) TCGA-EE-A2A5-06 22 37334053 37334053 G A CSF2RB Missense_Mutation p.G735S 0.56 tolerated(0.18) benign(0.098) TCGA-EE-A2A5-06 22 40417843 40417843 C T FAM83F Silent p.F443F 0.38 TCGA-EE-A2A5-06 22 45309881 45309881 G A PHF21B Missense_Mutation p.P218S 0.66 tolerated(0.38) benign(0) TCGA-EE-A2A5-06 22 50279635 50279635 G A ZBED4 Silent p.V775V 0.45 TCGA-EE-A2A5-06 22 50682732 50682732 C T TUBGCP6 Missense_Mutation p.E53K 0.50 deleterious(0.02) benign(0.03) TCGA-EE-A2A5-06 2 102851421 102851421 C T IL1RL2 Silent p.P454P 0.32 TCGA-EE-A2A5-06 2 107446576 107446576 G A ST6GAL2 Nonsense_Mutation p.Q422* 0.25 TCGA-EE-A2A5-06 2 107459540 107459540 G A ST6GAL2 Silent p.V298V 0.23 TCGA-EE-A2A5-06 2 113788669 113788669 C T IL36B Missense_Mutation p.G26E 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.481) TCGA-EE-A2A5-06 2 131976013 131976013 C T POTEE Missense_Mutation p.S13F 0.41 deleterious_low_confidence(0) benign(0) TCGA-EE-A2A5-06 2 132290508 132290508 C T CCDC74A Silent p.P316P 0.28 TCGA-EE-A2A5-06 2 136570000 136570000 C T LCT Missense_Mutation p.R745K 0.25 tolerated(1) benign(0.004) TCGA-EE-A2A5-06 2 152271359 152271359 C T RIF1 Missense_Mutation p.S69L 0.54 tolerated(0.2) benign(0.012) TCGA-EE-A2A5-06 2 154801128 154801128 A T GALNT13 Nonsense_Mutation p.R40* 0.36 TCGA-EE-A2A5-06 2 165476208 165476208 T A GRB14 Missense_Mutation p.R105W 0.59 deleterious(0.01) possibly_damaging(0.662) TCGA-EE-A2A5-06 2 166892848 166892848 C T SCN1A Missense_Mutation p.E1047K 0.26 tolerated(0.18) possibly_damaging(0.507) TCGA-EE-A2A5-06 2 166894334 166894334 G A SCN1A Silent p.A966A 0.27 TCGA-EE-A2A5-06 2 178879172 178879172 C T PDE11A Missense_Mutation p.D310N 0.27 tolerated(0.17) probably_damaging(0.989) TCGA-EE-A2A5-06 2 179527707 179527707 G A TTN Missense_Mutation p.A12259V 0.33 TCGA-EE-A2A5-06 2 179577493 179577493 C T TTN Missense_Mutation p.G9087R 0.53 TCGA-EE-A2A5-06 2 179584982 179584982 C T TTN Missense_Mutation p.R7796Q 0.31 TCGA-EE-A2A5-06 2 179610806 179610806 G A TTN Intron 0.44 TCGA-EE-A2A5-06 2 179640374 179640374 G A TTN Missense_Mutation p.P2073S 0.29 TCGA-EE-A2A5-06 2 179641179 179641179 G A TTN Silent p.S1804S 0.50 TCGA-EE-A2A5-06 2 179702336 179702336 C T CCDC141 Missense_Mutation p.E1204K 0.23 deleterious(0.02) possibly_damaging(0.627) TCGA-EE-A2A5-06 2 182928484 182928484 G A PPP1R1C Silent p.R76R 0.36 TCGA-EE-A2A5-06 2 183291412 183291412 G A PDE1A Intron 0.31 TCGA-EE-A2A5-06 2 187693194 187693194 G A ZSWIM2 Silent p.I473I 0.24 TCGA-EE-A2A5-06 2 187712507 187712507 G A ZSWIM2 Missense_Mutation p.P61S 0.25 deleterious(0) probably_damaging(0.966) TCGA-EE-A2A5-06 2 189859504 189859504 G A COL3A1 Missense_Mutation p.G468R 0.40 unknown(0) TCGA-EE-A2A5-06 2 192701073 192701073 C T SDPR Missense_Mutation p.G285E 0.26 deleterious(0.05) possibly_damaging(0.804) TCGA-EE-A2A5-06 2 192701257 192701257 C T SDPR Missense_Mutation p.E224K 0.27 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A2A5-06 2 196709845 196709845 G A DNAH7 Silent p.I2942I 0.51 TCGA-EE-A2A5-06 2 200824584 200824584 C T C2orf47 Silent p.S210S 0.58 TCGA-EE-A2A5-06 2 206980992 206980992 C T AC007383.4 RNA 0.44 TCGA-EE-A2A5-06 2 207175899 207175899 G A ZDBF2 Missense_Mutation p.R2216Q 0.35 tolerated(0.72) benign(0.01) TCGA-EE-A2A5-06 2 214239754 214239754 G A SPAG16 Missense_Mutation p.E285K 0.47 tolerated(0.38) benign(0.021) TCGA-EE-A2A5-06 2 216262452 216262452 C T FN1 Silent p.L1156L 0.49 TCGA-EE-A2A5-06 2 219222442 219222442 G A C2orf62 Missense_Mutation p.G102R 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A5-06 2 219688558 219688558 C T PRKAG3 Missense_Mutation p.G466D 0.55 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A5-06 2 226446914 226446914 G A NYAP2 Missense_Mutation p.D261N 0.53 deleterious(0.02) benign(0.127) TCGA-EE-A2A5-06 2 230231825 230231825 C T DNER Nonsense_Mutation p.W622* 0.54 TCGA-EE-A2A5-06 2 24046247 24046247 G A ATAD2B Missense_Mutation p.S671L 0.25 deleterious(0) benign(0.2) TCGA-EE-A2A5-06 2 241991544 241991544 C T SNED1 Missense_Mutation p.P647S 0.38 tolerated(0.1) probably_damaging(0.965) TCGA-EE-A2A5-06 2 24426500 24426500 G A ITSN2 Silent p.L1697L 0.18 TCGA-EE-A2A5-06 2 27505713 27505713 G A TRIM54 Silent p.V38V 0.48 TCGA-EE-A2A5-06 2 29296844 29296844 C T C2orf71 Missense_Mutation p.G95E 0.34 tolerated(1) benign(0.004) TCGA-EE-A2A5-06 2 31135139 31135139 G A GALNT14 Missense_Mutation p.P489S 0.48 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A2A5-06 2 37518100 37518100 A G PRKD3 Missense_Mutation p.L157P 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 2 43927200 43927200 G T PLEKHH2 Missense_Mutation p.G368V 0.28 tolerated_low_confidence(0.14) benign(0.002) TCGA-EE-A2A5-06 2 43927268 43927268 C T PLEKHH2 Nonsense_Mutation p.Q391* 0.33 TCGA-EE-A2A5-06 2 61415640 61415640 T A USP34 Missense_Mutation p.K3413I 0.33 deleterious_low_confidence(0.02) benign(0.038) TCGA-EE-A2A5-06 2 74328099 74328099 C T TET3 Missense_Mutation p.S1260F 0.33 deleterious(0.04) benign(0.218) TCGA-EE-A2A5-06 2 84670433 84670433 A G SUCLG1 Missense_Mutation p.L98S 0.52 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-EE-A2A5-06 2 86067340 86067340 G T ST3GAL5 Missense_Mutation p.T395N 0.47 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2A5-06 2 87085363 87085363 C T CD8B Missense_Mutation p.D74N 0.57 tolerated(0.44) benign(0.122) TCGA-EE-A2A5-06 2 89327136 89327136 G A IGKV3-11 Missense_Mutation p.P16S 0.44 tolerated(0.48) probably_damaging(0.999) TCGA-EE-A2A5-06 3 10387777 10387777 C T ATP2B2 Missense_Mutation p.V817M 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 3 10430031 10430031 G A ATP2B2 Silent p.N279N 0.54 TCGA-EE-A2A5-06 3 108723928 108723928 C T MORC1 Missense_Mutation p.E668K 0.51 tolerated(0.1) benign(0.01) TCGA-EE-A2A5-06 3 121416682 121416682 G A GOLGB1 Silent p.T896T 0.38 TCGA-EE-A2A5-06 3 121575914 121575914 G A EAF2 Nonsense_Mutation p.W132* 0.50 TCGA-EE-A2A5-06 3 130189733 130189733 C T COL6A5 Missense_Mutation p.P2499L 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A2A5-06 3 142075782 142075782 G A XRN1 Missense_Mutation p.S1215F 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 3 148614335 148614335 G A CPA3 Nonsense_Mutation p.W365* 0.28 TCGA-EE-A2A5-06 3 155198963 155198963 C T PLCH1 Missense_Mutation p.V1626M 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.522) TCGA-EE-A2A5-06 3 155571628 155571628 C T SLC33A1 Silent p.L53L 0.29 TCGA-EE-A2A5-06 3 169099121 169099121 G A MECOM Missense_Mutation p.P101S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 3 169539831 169539831 C T LRRIQ4 Missense_Mutation p.P41L 0.25 tolerated(0.07) possibly_damaging(0.831) TCGA-EE-A2A5-06 3 172003763 172003763 G A FNDC3B Missense_Mutation p.E280K 0.29 tolerated(0.56) benign(0.324) TCGA-EE-A2A5-06 3 176755936 176755936 C T TBL1XR1 Missense_Mutation p.D358N 0.43 deleterious(0.04) benign(0.381) TCGA-EE-A2A5-06 3 176755937 176755937 C T TBL1XR1 Nonsense_Mutation p.W357* 0.41 TCGA-EE-A2A5-06 3 180366002 180366002 T C CCDC39 Missense_Mutation p.Q438R 0.51 tolerated(0.82) benign(0.001) TCGA-EE-A2A5-06 3 182871520 182871521 AG - LAMP3 Frame_Shift_Del p.C237Yfs*61 0.20 TCGA-EE-A2A5-06 3 186954276 186954276 G A MASP1 Silent p.F461F 0.36 TCGA-EE-A2A5-06 3 23250196 23250196 C T UBE2E2 Silent p.S2S 0.30 TCGA-EE-A2A5-06 3 35780969 35780969 C T ARPP21 Missense_Mutation p.P603L 0.30 deleterious(0) benign(0.11) TCGA-EE-A2A5-06 3 36872668 36872668 C T TRANK1 Silent p.R2758R 0.52 TCGA-EE-A2A5-06 3 36874065 36874065 A T TRANK1 Missense_Mutation p.F2293I 0.57 deleterious(0.01) possibly_damaging(0.806) TCGA-EE-A2A5-06 3 36896672 36896672 G A TRANK1 Missense_Mutation p.S1470F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 3 38149958 38149958 C T DLEC1 Silent p.G1027G 0.35 TCGA-EE-A2A5-06 3 43122145 43122145 G A POMGNT2 Missense_Mutation p.S260L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A5-06 3 43122146 43122146 A C POMGNT2 Missense_Mutation p.S260A 0.51 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2A5-06 3 43618398 43618398 C T ANO10 Silent p.L316L 0.36 TCGA-EE-A2A5-06 3 47470067 47470067 G A SCAP Missense_Mutation p.R116C 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 3 49688503 49688503 G A BSN Silent p.G659G 0.50 TCGA-EE-A2A5-06 3 49751380 49751380 G A RNF123 Missense_Mutation p.E959K 0.11 deleterious(0) possibly_damaging(0.71) TCGA-EE-A2A5-06 3 51430322 51430322 C T RBM15B Missense_Mutation p.P498S 0.30 tolerated(0.14) benign(0.246) TCGA-EE-A2A5-06 3 52130635 52130635 G A POC1A Silent p.L359L 0.43 TCGA-EE-A2A5-06 3 52130636 52130636 T A POC1A Silent p.T358T 0.41 TCGA-EE-A2A5-06 3 52438473 52438473 G A BAP1 Missense_Mutation p.L416F 0.46 tolerated_low_confidence(0.28) benign(0.01) TCGA-EE-A2A5-06 3 52547956 52547956 G T STAB1 Missense_Mutation p.D1136Y 0.37 deleterious(0) possibly_damaging(0.664) TCGA-EE-A2A5-06 3 75680003 75680003 G A MIR1324 RNA 0.14 TCGA-EE-A2A5-06 3 89480399 89480399 G A EPHA3 Missense_Mutation p.D746N 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 3 97167412 97167412 G A EPHA6 Missense_Mutation p.E578K 0.37 tolerated(0.15) possibly_damaging(0.858) TCGA-EE-A2A5-06 4 110687788 110687788 T C CFI Missense_Mutation p.T84A 0.27 deleterious(0) possibly_damaging(0.507) TCGA-EE-A2A5-06 4 113352739 113352739 C T ALPK1 Missense_Mutation p.T679I 0.28 tolerated(0.15) benign(0.004) TCGA-EE-A2A5-06 4 115998075 115998075 C T NDST4 Missense_Mutation p.E40K 0.28 tolerated_low_confidence(0.48) benign(0.187) TCGA-EE-A2A5-06 4 13338707 13338707 G A HSP90AB2P RNA 0.47 TCGA-EE-A2A5-06 4 147561718 147561718 C T POU4F2 Missense_Mutation p.H330Y 0.33 tolerated(0.63) benign(0.001) TCGA-EE-A2A5-06 4 151504921 151504921 G A MAB21L2 Missense_Mutation p.R247Q 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 4 170663151 170663151 G T C4orf27 Nonsense_Mutation p.S202* 0.28 TCGA-EE-A2A5-06 4 187539690 187539690 C T FAT1 Missense_Mutation p.E2684K 0.36 benign(0.217) TCGA-EE-A2A5-06 4 188924602 188924602 C T ZFP42 Missense_Mutation p.P214L 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A5-06 4 25669533 25669533 C T SLC34A2 Silent p.I185I 0.51 TCGA-EE-A2A5-06 4 41673605 41673605 G A LIMCH1 Missense_Mutation p.M759I 0.39 tolerated(0.4) benign(0.004) TCGA-EE-A2A5-06 4 420881 420881 A G ABCA11P Intron 0.25 TCGA-EE-A2A5-06 4 44177195 44177195 C T KCTD8 Missense_Mutation p.G345E 0.57 tolerated(1) benign(0.019) TCGA-EE-A2A5-06 4 47560265 47560265 G A ATP10D Missense_Mutation p.M803I 0.43 deleterious(0.01) benign(0.443) TCGA-EE-A2A5-06 4 48853932 48853932 C T OCIAD1 Missense_Mutation p.P163S 0.21 tolerated(0.13) possibly_damaging(0.607) TCGA-EE-A2A5-06 4 69101731 69101731 G A TMPRSS11B Silent p.V99V 0.58 TCGA-EE-A2A5-06 4 69795526 69795526 A T UGT2A3 3'UTR 0.47 TCGA-EE-A2A5-06 4 69962908 69962908 T C UGT2B7 Missense_Mutation p.F224L 0.45 tolerated(0.07) benign(0.067) TCGA-EE-A2A5-06 4 72363279 72363279 G A SLC4A4 Missense_Mutation p.G679E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 4 74442000 74442000 C T RASSF6 Silent p.L354L 0.50 TCGA-EE-A2A5-06 4 77250083 77250083 G A CCDC158 Missense_Mutation p.P990S 0.18 tolerated(0.62) probably_damaging(0.994) TCGA-EE-A2A5-06 4 94128560 94128560 G A GRID2 Silent p.V247V 0.26 TCGA-EE-A2A5-06 5 102611674 102611674 C G C5orf30 Missense_Mutation p.F18L 0.31 tolerated_low_confidence(0.59) benign(0) TCGA-EE-A2A5-06 5 102611675 102611675 C T C5orf30 Missense_Mutation p.P19S 0.30 tolerated_low_confidence(0.15) benign(0.06) TCGA-EE-A2A5-06 5 102611864 102611864 G A C5orf30 Missense_Mutation p.E82K 0.75 tolerated_low_confidence(0.22) probably_damaging(0.981) TCGA-EE-A2A5-06 5 1246069 1246069 C T SLC6A18 Missense_Mutation p.A588V 0.64 tolerated(0.46) possibly_damaging(0.472) TCGA-EE-A2A5-06 5 1246071 1246071 C T SLC6A18 Nonsense_Mutation p.Q589* 0.64 TCGA-EE-A2A5-06 5 128302156 128302156 C T SLC27A6 Missense_Mutation p.A109V 0.65 deleterious(0) possibly_damaging(0.8) TCGA-EE-A2A5-06 5 139197084 139197084 G A PSD2 Silent p.L345L 0.51 TCGA-EE-A2A5-06 5 140558546 140558546 G A PCDHB8 Missense_Mutation p.E311K 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2A5-06 5 140720391 140720391 C T PCDHGA2 Missense_Mutation p.S618L 0.23 deleterious_low_confidence(0.05) benign(0.014) TCGA-EE-A2A5-06 5 140725326 140725326 G A PCDHGA3 Missense_Mutation p.E576K 0.31 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A2A5-06 5 14488291 14488291 C T TRIO Silent p.A2518A 0.64 TCGA-EE-A2A5-06 5 145197505 145197505 G A PRELID2 Missense_Mutation p.S119F 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A2A5-06 5 149748403 149748403 C T TCOF1 Missense_Mutation p.T168M 0.74 deleterious(0.02) benign(0.411) TCGA-EE-A2A5-06 5 150923867 150923867 T C FAT2 Missense_Mutation p.Q2274R 0.58 benign(0.049) TCGA-EE-A2A5-06 5 151771938 151771938 G A NMUR2 Silent p.D354D 0.65 TCGA-EE-A2A5-06 5 159659229 159659229 C T FABP6 Silent p.F113F 0.45 TCGA-EE-A2A5-06 5 167645808 167645808 A T TENM2 Missense_Mutation p.I1638F 0.27 deleterious(0.02) benign(0.221) TCGA-EE-A2A5-06 5 170239142 170239142 G A GABRP Silent p.R401R 0.21 TCGA-EE-A2A5-06 5 24593449 24593449 G A CDH10 Missense_Mutation p.R51C 0.20 deleterious(0) probably_damaging(0.973) TCGA-EE-A2A5-06 5 31302390 31302390 T C CDH6 Silent p.I328I 0.28 TCGA-EE-A2A5-06 5 31323288 31323288 C T CDH6 Missense_Mutation p.S749F 0.63 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A5-06 5 34998865 34998865 G A AGXT2 Missense_Mutation p.R502C 0.28 deleterious(0.03) benign(0.005) TCGA-EE-A2A5-06 5 66400333 66400333 C T MAST4 Missense_Mutation p.S429F 0.19 probably_damaging(0.998) TCGA-EE-A2A5-06 5 66400334 66400334 C T MAST4 Silent p.S429S 0.19 TCGA-EE-A2A5-06 5 6746536 6746536 G A PAPD7 Silent p.L235L 0.08 TCGA-EE-A2A5-06 5 75954316 75954316 C T IQGAP2 Missense_Mutation p.R785C 0.24 tolerated(0.07) probably_damaging(0.932) TCGA-EE-A2A5-06 6 118790464 118790464 G A CEP85L Silent p.N678N 0.83 TCGA-EE-A2A5-06 6 125144426 125144426 C T NKAIN2 3'UTR 0.88 TCGA-EE-A2A5-06 6 148865456 148865456 C T SASH1 Silent p.G950G 0.87 TCGA-EE-A2A5-06 6 161139847 161139847 C T PLG Missense_Mutation p.S358F 0.73 deleterious(0.04) benign(0.015) TCGA-EE-A2A5-06 6 161139848 161139848 C T PLG Silent p.S358S 0.73 TCGA-EE-A2A5-06 6 167708178 167708178 C T UNC93A Silent p.F87F 0.79 TCGA-EE-A2A5-06 6 25279957 25279957 C T LRRC16A 5'UTR 0.49 TCGA-EE-A2A5-06 6 25665219 25665219 C T SCGN Missense_Mutation p.R99C 0.50 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A5-06 6 27776067 27776067 C T HIST1H2AI Missense_Mutation p.P27L 0.40 deleterious_low_confidence(0) benign(0.247) TCGA-EE-A2A5-06 6 29323340 29323340 G A OR5V1 Silent p.F211F 0.43 TCGA-EE-A2A5-06 6 29524029 29524029 C T UBD Silent p.K42K 0.44 TCGA-EE-A2A5-06 6 30131573 30131573 C T TRIM15 Missense_Mutation p.L38F 0.54 tolerated(0.43) possibly_damaging(0.522) TCGA-EE-A2A5-06 6 35108526 35108526 G A TCP11 Missense_Mutation p.P54L 0.33 tolerated(0.22) benign(0.003) TCGA-EE-A2A5-06 6 35392187 35392187 C T PPARD Missense_Mutation p.P237S 0.50 tolerated(0.49) benign(0.061) TCGA-EE-A2A5-06 6 40359883 40359883 G A LRFN2 Silent p.S723S 0.39 TCGA-EE-A2A5-06 6 54792312 54792312 C T FAM83B Nonsense_Mutation p.R206* 0.49 TCGA-EE-A2A5-06 6 7845396 7845396 C T BMP6 Missense_Mutation p.P230S 0.44 tolerated(0.36) possibly_damaging(0.834) TCGA-EE-A2A5-06 6 7862700 7862700 C T BMP6 Silent p.S391S 0.41 TCGA-EE-A2A5-06 7 100161517 100161517 G A AGFG2 Missense_Mutation p.G411E 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-EE-A2A5-06 7 100361526 100361526 C T ZAN Missense_Mutation p.H1362Y 0.44 unknown(0) TCGA-EE-A2A5-06 7 117176693 117176693 G A CFTR Missense_Mutation p.E279K 0.40 tolerated(0.38) benign(0.104) TCGA-EE-A2A5-06 7 133812400 133812400 G A LRGUK Missense_Mutation p.E94K 0.40 deleterious(0.01) possibly_damaging(0.783) TCGA-EE-A2A5-06 7 140110844 140110844 A C RAB19 Intron 0.26 TCGA-EE-A2A5-06 7 140402692 140402692 C T NDUFB2 Missense_Mutation p.P42L 0.38 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A2A5-06 7 141423004 141423004 G A WEE2 Silent p.K317K 0.46 TCGA-EE-A2A5-06 7 141727428 141727428 C T MGAM Missense_Mutation p.L372F 0.32 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2A5-06 7 141770813 141770813 G A MGAM Intron 0.43 TCGA-EE-A2A5-06 7 142197670 142197670 G A TRBV11-2 RNA 0.22 TCGA-EE-A2A5-06 7 143140776 143140776 C T TAS2R60 Silent p.T77T 0.59 TCGA-EE-A2A5-06 7 143702018 143702018 C T OR6B1 Missense_Mutation p.S310F 0.35 deleterious(0.01) benign(0.115) TCGA-EE-A2A5-06 7 149500562 149500562 G A SSPO Splice_Site 0.50 TCGA-EE-A2A5-06 7 31008515 31008515 C T GHRHR Silent p.L42L 0.37 TCGA-EE-A2A5-06 7 34698164 34698164 C T NPSR1 Missense_Mutation p.S47F 0.49 tolerated(0.17) benign(0.11) TCGA-EE-A2A5-06 7 35242269 35242269 C T TBX20 Missense_Mutation p.A373T 0.21 tolerated_low_confidence(0.12) benign(0) TCGA-EE-A2A5-06 7 44105148 44105148 G A PGAM2 5'UTR 0.45 TCGA-EE-A2A5-06 7 47454705 47454705 G A TNS3 Silent p.F191F 0.27 TCGA-EE-A2A5-06 7 70800683 70800683 C T WBSCR17 Missense_Mutation p.S129L 0.24 tolerated(0.06) probably_damaging(0.95) TCGA-EE-A2A5-06 7 73973290 73973290 C T GTF2IRD1 Missense_Mutation p.P768L 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2A5-06 7 87056159 87056159 G A ABCB4 Silent p.G657G 0.50 TCGA-EE-A2A5-06 7 92734923 92734923 G A SAMD9 Missense_Mutation p.S163L 0.46 deleterious(0.01) benign(0.039) TCGA-EE-A2A5-06 7 93055823 93055823 G A CALCR Missense_Mutation p.R458C 0.35 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2A5-06 7 95115433 95115433 C T ASB4 Silent p.V50V 0.36 TCGA-EE-A2A5-06 7 97823516 97823516 C T LMTK2 Silent p.L1247L 0.35 TCGA-EE-A2A5-06 8 108297042 108297042 C T ANGPT1 Missense_Mutation p.G358E 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 8 110408344 110408344 C T PKHD1L1 Silent p.F300F 0.50 TCGA-EE-A2A5-06 8 113236998 113236998 C T CSMD3 3'UTR 0.36 TCGA-EE-A2A5-06 8 125551344 125551344 C T TATDN1 5'Flank 0.53 TCGA-EE-A2A5-06 8 133141802 133141802 G A KCNQ3 Missense_Mutation p.P776S 0.40 tolerated_low_confidence(0.57) benign(0.146) TCGA-EE-A2A5-06 8 134108579 134108579 C T TG Nonsense_Mutation p.Q2512* 0.51 TCGA-EE-A2A5-06 8 141231641 141231641 G A TRAPPC9 Missense_Mutation p.R923W 0.47 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2A5-06 8 144463852 144463852 C T RHPN1 Silent p.V533V 0.64 TCGA-EE-A2A5-06 8 144463853 144463853 C T RHPN1 Missense_Mutation p.L534F 0.64 tolerated(0.08) probably_damaging(0.995) TCGA-EE-A2A5-06 8 27311673 27311673 C T PTK2B Silent p.S866S 0.76 TCGA-EE-A2A5-06 8 32621534 32621534 C T NRG1 Missense_Mutation p.P518S 0.95 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A5-06 8 41387799 41387799 C T GINS4 Silent p.L26L 0.88 TCGA-EE-A2A5-06 8 52321411 52321411 G A PXDNL Missense_Mutation p.P925S 0.48 tolerated(0.42) benign(0.027) TCGA-EE-A2A5-06 8 63902756 63902756 C T NKAIN3 Missense_Mutation p.L188F 0.15 tolerated_low_confidence(0.25) benign(0.075) TCGA-EE-A2A5-06 8 6873614 6873614 C T DEFA3 Silent p.R61R 0.77 TCGA-EE-A2A5-06 8 70744030 70744030 G A SLCO5A1 Silent p.V293V 0.52 TCGA-EE-A2A5-06 9 100237744 100237744 G C TDRD7 Missense_Mutation p.R720P 0.62 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A5-06 9 103055012 103055012 C T INVS Missense_Mutation p.P825S 0.54 tolerated_low_confidence(0.71) benign(0.004) TCGA-EE-A2A5-06 9 105768056 105768056 G A CYLC2 3'UTR 0.26 TCGA-EE-A2A5-06 9 107367200 107367200 C T OR13C2 Missense_Mutation p.A237T 0.60 deleterious(0.01) benign(0.287) TCGA-EE-A2A5-06 9 113276374 113276374 C T SVEP1 Missense_Mutation p.G326E 0.25 probably_damaging(1) TCGA-EE-A2A5-06 9 115641968 115641968 T C SLC46A2 3'UTR 0.65 TCGA-EE-A2A5-06 9 120476880 120476880 G A TLR4 Missense_Mutation p.G825E 0.56 tolerated_low_confidence(0.28) benign(0.049) TCGA-EE-A2A5-06 9 126125281 126125281 C T CRB2 Missense_Mutation p.H78Y 0.24 deleterious(0) unknown(0) TCGA-EE-A2A5-06 9 138676725 138676725 C T KCNT1 Missense_Mutation p.S1049F 0.52 deleterious(0) benign(0.128) TCGA-EE-A2A5-06 9 138676726 138676726 C T KCNT1 Silent p.S1049S 0.51 TCGA-EE-A2A5-06 9 14748472 14748472 C T FREM1 Missense_Mutation p.G1908E 0.77 tolerated(0.11) benign(0.038) TCGA-EE-A2A5-06 9 32634818 32634818 G A TAF1L Nonsense_Mutation p.R254* 0.37 TCGA-EE-A2A5-06 9 35676143 35676143 G A CA9 Nonsense_Mutation p.W229* 0.58 TCGA-EE-A2A5-06 9 36222900 36222900 G A GNE Missense_Mutation p.P534S 0.60 tolerated_low_confidence(0.06) probably_damaging(0.973) TCGA-EE-A2A5-06 9 72967336 72967336 A T SMC5 3'UTR 0.83 TCGA-EE-A2A5-06 9 72967337 72967337 C T SMC5 3'UTR 0.83 TCGA-EE-A2A5-06 9 80039047 80039047 G T GNA14 Missense_Mutation p.L306M 0.22 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A2A5-06 9 80039048 80039048 G A GNA14 Silent p.I305I 0.22 TCGA-EE-A2A5-06 9 85619478 85619478 C T RASEF Silent p.G379G 0.50 TCGA-EE-A2A5-06 9 95048112 95048112 G A IARS Silent p.F163F 0.57 TCGA-EE-A2A5-06 X 102193017 102193017 G A RAB40AL Silent p.V257V 0.90 TCGA-EE-A2A5-06 X 105168889 105168889 G A NRK Missense_Mutation p.D1061N 0.81 tolerated(1) benign(0.001) TCGA-EE-A2A5-06 X 111698680 111698680 C T ZCCHC16 Nonsense_Mutation p.Q242* 0.84 TCGA-EE-A2A5-06 X 117577520 117577520 C T WDR44 Intron 0.61 TCGA-EE-A2A5-06 X 141290729 141290729 C T MAGEC2 Missense_Mutation p.D349N 0.70 tolerated(0.2) benign(0.057) TCGA-EE-A2A5-06 X 150349283 150349283 C T GPR50 Missense_Mutation p.H410Y 0.89 tolerated_low_confidence(0.11) benign(0.001) TCGA-EE-A2A5-06 X 150791502 150791502 G A PASD1 Missense_Mutation p.G171E 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A2A5-06 X 150889963 150889963 C T FATE1 Missense_Mutation p.H111Y 1.00 tolerated(0.98) benign(0.193) TCGA-EE-A2A5-06 X 1536944 1536944 C T ASMTL Missense_Mutation p.D482N 0.40 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A5-06 X 16142206 16142206 C T GRPR Missense_Mutation p.P44S 0.94 tolerated(0.16) benign(0.293) TCGA-EE-A2A5-06 X 67518911 67518911 G A OPHN1 Missense_Mutation p.S61F 0.86 deleterious(0) benign(0.266) TCGA-EE-A2A5-06 X 75003330 75003330 G A MAGEE2 Silent p.F519F 0.84 TCGA-EE-A2A5-06 X 76711855 76711855 G A FGF16 Missense_Mutation p.D65N 0.75 benign(0.005) TCGA-EE-A2A5-06 X 78427144 78427144 G A GPR174 Missense_Mutation p.D214N 0.76 tolerated(0.12) benign(0.006) TCGA-EE-A2A6-06 10 101654768 101654768 G A DNMBP Nonsense_Mutation p.R1031* 0.24 TCGA-EE-A2A6-06 10 102057345 102057345 C T PKD2L1 Silent p.Q250Q 0.29 TCGA-EE-A2A6-06 10 103921610 103921610 C T NOLC1 Silent p.S623S 0.25 TCGA-EE-A2A6-06 10 103921611 103921611 C T NOLC1 Missense_Mutation p.P624S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A6-06 10 106075177 106075177 G A ITPRIP Silent p.F211F 0.33 TCGA-EE-A2A6-06 10 125516860 125516860 C T CPXM2 Missense_Mutation p.D596N 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 10 24832987 24832987 G A KIAA1217 Silent p.G1596G 0.35 TCGA-EE-A2A6-06 10 46999128 46999128 G A GPRIN2 Missense_Mutation p.R83Q 0.14 tolerated(1) benign(0.003) TCGA-EE-A2A6-06 10 55721651 55721651 C T PCDH15 Missense_Mutation p.G957E 0.46 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2A6-06 10 88123843 88123843 G A GRID1 Silent p.F30F 0.34 TCGA-EE-A2A6-06 10 88768401 88768401 G A RP11-96C23.10 3'Flank 0.32 TCGA-EE-A2A6-06 10 95070382 95070382 A T MYOF Missense_Mutation p.L1970M 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2A6-06 11 101374914 101374914 C T TRPC6 Silent p.Q262Q 0.26 TCGA-EE-A2A6-06 11 10597822 10597822 G A MRVI1 3'UTR 0.33 TCGA-EE-A2A6-06 11 108205756 108205756 C T ATM Missense_Mutation p.R2691C 0.24 deleterious(0) possibly_damaging(0.582) TCGA-EE-A2A6-06 11 119228485 119228485 G A USP2 Missense_Mutation p.P495S 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 11 126146989 126146989 C G FOXRED1 Missense_Mutation p.N375K 0.17 deleterious(0) benign(0.363) TCGA-EE-A2A6-06 11 1471065 1471065 G A BRSK2 Missense_Mutation p.R475Q 0.20 tolerated(0.17) benign(0.044) TCGA-EE-A2A6-06 11 18956224 18956224 G A MRGPRX1 Silent p.I36I 0.15 TCGA-EE-A2A6-06 11 18956427 18956427 G A MRGPRX1 5'UTR 0.13 TCGA-EE-A2A6-06 11 20127234 20127234 C T NAV2 Missense_Mutation p.R2327C 0.26 tolerated(0.1) possibly_damaging(0.776) TCGA-EE-A2A6-06 11 22360116 22360116 A T SLC17A6 Nonsense_Mutation p.K13* 0.20 TCGA-EE-A2A6-06 11 30034030 30034030 G A KCNA4 Nonsense_Mutation p.Q66* 0.30 TCGA-EE-A2A6-06 11 33620521 33620521 C T KIAA1549L Intron 0.31 TCGA-EE-A2A6-06 11 3429945 3429945 G A TSSC2 RNA 0.23 TCGA-EE-A2A6-06 11 3429946 3429946 G A TSSC2 RNA 0.24 TCGA-EE-A2A6-06 11 35336577 35336577 T G SLC1A2 Missense_Mutation p.L101F 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A6-06 11 36654869 36654869 G A C11orf74 Missense_Mutation p.D58N 0.27 tolerated(0.18) benign(0.013) TCGA-EE-A2A6-06 11 46565585 46565585 C T AMBRA1 Silent p.V186V 0.31 TCGA-EE-A2A6-06 11 46750981 46750981 G A F2 Silent p.K508K 0.31 TCGA-EE-A2A6-06 11 5255382 5255382 G A HBD Missense_Mutation p.P52S 0.23 tolerated(0.2) benign(0.028) TCGA-EE-A2A6-06 11 55890126 55890126 C T OR8H3 Missense_Mutation p.S93F 0.22 deleterious(0) possibly_damaging(0.635) TCGA-EE-A2A6-06 11 56085949 56085949 A G OR8K3 Missense_Mutation p.Q56R 0.23 deleterious_low_confidence(0.01) benign(0.204) TCGA-EE-A2A6-06 11 56113754 56113754 C T OR8K1 Silent p.S80S 0.15 TCGA-EE-A2A6-06 11 57003831 57003831 G A APLNR Silent p.I216I 0.29 TCGA-EE-A2A6-06 11 58711097 58711097 C T GLYATL1 Missense_Mutation p.P36S 0.22 tolerated(0.06) benign(0.118) TCGA-EE-A2A6-06 11 5878415 5878415 G A OR52E8 Missense_Mutation p.P173L 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A2A6-06 11 59410478 59410478 G A PATL1 Missense_Mutation p.L642F 0.34 tolerated(0.74) benign(0.005) TCGA-EE-A2A6-06 11 64567664 64567664 G A MAP4K2 Missense_Mutation p.P278S 0.23 tolerated(1) benign(0.057) TCGA-EE-A2A6-06 11 67219374 67219374 C T GPR152 Nonsense_Mutation p.W274* 0.26 TCGA-EE-A2A6-06 11 67432808 67432808 G A ALDH3B2 Silent p.G218G 0.33 TCGA-EE-A2A6-06 11 71806594 71806594 G A LRTOMT Intron 0.57 TCGA-EE-A2A6-06 11 72005078 72005078 G A CLPB Silent p.S621S 0.26 TCGA-EE-A2A6-06 11 73021239 73021239 C T ARHGEF17 Missense_Mutation p.P519L 0.34 deleterious_low_confidence(0) benign(0.05) TCGA-EE-A2A6-06 11 7530941 7530941 G A OLFML1 Missense_Mutation p.R244K 0.31 tolerated(0.34) benign(0.026) TCGA-EE-A2A6-06 11 86158220 86158220 C T ME3 Missense_Mutation p.E423K 0.27 tolerated(0.54) benign(0.01) TCGA-EE-A2A6-06 11 8704277 8704277 G A RPL27A 5'UTR 0.17 TCGA-EE-A2A6-06 11 89537268 89537268 G A TRIM49 Missense_Mutation p.H124Y 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 12 10560383 10560383 G A KLRC4 Missense_Mutation p.H116Y 0.41 tolerated(0.06) benign(0.014) TCGA-EE-A2A6-06 12 109016855 109016855 A G SELPLG Missense_Mutation p.F426S 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 12 109016856 109016856 A G SELPLG Missense_Mutation p.F426L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 12 109052620 109052620 T A CORO1C Missense_Mutation p.D175V 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A6-06 12 113770601 113770601 C T SLC8B1 Missense_Mutation p.R28K 0.28 tolerated_low_confidence(0.58) benign(0.055) TCGA-EE-A2A6-06 12 121681825 121681825 A T CAMKK2 Intron 0.48 TCGA-EE-A2A6-06 12 1940101 1940101 G A LRTM2 Nonsense_Mutation p.W23* 0.24 TCGA-EE-A2A6-06 12 20799828 20799828 G A PDE3A Missense_Mutation p.D837N 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 12 344336 344336 G A SLC6A13 Nonsense_Mutation p.R251* 0.49 TCGA-EE-A2A6-06 12 51696549 51696549 G A BIN2 Missense_Mutation p.S78L 0.59 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A6-06 12 56530608 56530608 C T ESYT1 Silent p.I581I 0.47 TCGA-EE-A2A6-06 12 68551791 68551791 G A IFNG Nonsense_Mutation p.Q90* 0.36 TCGA-EE-A2A6-06 12 69158494 69158494 T C SLC35E3 Missense_Mutation p.F256L 0.48 tolerated(0.83) benign(0.004) TCGA-EE-A2A6-06 12 71971717 71971717 G A LGR5 Nonsense_Mutation p.W407* 0.21 TCGA-EE-A2A6-06 12 81545624 81545624 G A ACSS3 Missense_Mutation p.G308D 0.44 deleterious(0) benign(0.133) TCGA-EE-A2A6-06 13 114287486 114287486 C T TFDP1 Silent p.S120S 0.33 TCGA-EE-A2A6-06 13 19751121 19751121 G A TUBA3C Silent p.T334T 0.30 TCGA-EE-A2A6-06 13 19997126 19997126 G A TPTE2 3'UTR 0.53 TCGA-EE-A2A6-06 13 24895885 24895885 C T C1QTNF9 Silent p.F327F 0.33 TCGA-EE-A2A6-06 13 29598914 29598914 G A MTUS2 Missense_Mutation p.E37K 0.22 deleterious(0) possibly_damaging(0.453) TCGA-EE-A2A6-06 13 53420448 53420448 G A PCDH8 Silent p.F708F 0.36 TCGA-EE-A2A6-06 13 77636771 77636771 G A MYCBP2 Missense_Mutation p.S4207L 0.08 probably_damaging(0.96) TCGA-EE-A2A6-06 13 97640022 97640022 C T OXGR1 5'UTR 0.19 TCGA-EE-A2A6-06 14 23894119 23894119 C T MYH7 Silent p.E846E 0.31 TCGA-EE-A2A6-06 14 36103869 36103869 G T RALGAPA1 Missense_Mutation p.P1463H 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 14 36103870 36103870 G A RALGAPA1 Missense_Mutation p.P1463S 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2A6-06 14 93154411 93154411 C T RIN3 Silent p.F924F 0.41 TCGA-EE-A2A6-06 15 23889835 23889835 G C MAGEL2 Missense_Mutation p.P416A 0.44 tolerated(0.05) benign(0.056) TCGA-EE-A2A6-06 15 24921149 24921149 C T NPAP1 Silent p.R45R 0.33 TCGA-EE-A2A6-06 15 31239448 31239448 G A MTMR10 Missense_Mutation p.P478L 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 15 39874527 39874527 C T THBS1 Silent p.I67I 0.17 TCGA-EE-A2A6-06 15 50474656 50474656 G A SLC27A2 Missense_Mutation p.G11E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 15 51993377 51993377 A G SCG3 Silent p.G381G 0.27 TCGA-EE-A2A6-06 15 54625970 54625970 C T UNC13C Silent p.N1500N 0.19 TCGA-EE-A2A6-06 15 59499593 59499593 G A LDHAL6B Missense_Mutation p.G152R 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2A6-06 15 68434638 68434638 G A PIAS1 Missense_Mutation p.G189R 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2A6-06 15 69347777 69347777 G A NOX5 Silent p.E701E 0.18 TCGA-EE-A2A6-06 15 81627285 81627285 C T TMC3 Silent p.K745K 0.08 TCGA-EE-A2A6-06 15 89401563 89401563 G A ACAN Missense_Mutation p.S1916N 0.21 tolerated(0.41) benign(0.17) TCGA-EE-A2A6-06 15 90794035 90794035 C T TTLL13 Missense_Mutation p.A58V 0.20 deleterious_low_confidence(0) benign(0.042) TCGA-EE-A2A6-06 16 1270155 1270155 G A CACNA1H Missense_Mutation p.G2075R 0.50 tolerated(0.1) probably_damaging(1) TCGA-EE-A2A6-06 16 15166902 15166902 G A RRN3 Missense_Mutation p.R345C 0.52 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A6-06 16 20387405 20387405 G A PDILT Silent p.I176I 0.45 TCGA-EE-A2A6-06 16 26147374 26147374 G A HS3ST4 Silent p.K392K 0.48 TCGA-EE-A2A6-06 16 28502851 28502851 G A CLN3 Missense_Mutation p.P26L 0.96 deleterious(0.04) benign(0.059) TCGA-EE-A2A6-06 16 29912768 29912768 G A ASPHD1 Nonsense_Mutation p.W159* 0.31 TCGA-EE-A2A6-06 16 53272403 53272403 C T CHD9 Missense_Mutation p.R928C 0.55 benign(0.038) TCGA-EE-A2A6-06 16 68862142 68862142 C T CDH1 Missense_Mutation p.P744S 0.44 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A2A6-06 16 716594 716594 C T WDR90 Missense_Mutation p.T1627M 0.57 tolerated(0.28) benign(0.244) TCGA-EE-A2A6-06 16 72094402 72094402 G A HP Silent p.V278V 0.65 TCGA-EE-A2A6-06 17 1587789 1587789 G A PRPF8 Missense_Mutation p.S26L 0.32 tolerated_low_confidence(0.11) benign(0.008) TCGA-EE-A2A6-06 17 25783803 25783803 A G KSR1 Missense_Mutation p.Q45R 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A6-06 17 27421799 27421799 A C MYO18A Missense_Mutation p.S1527A 0.22 tolerated(0.11) possibly_damaging(0.588) TCGA-EE-A2A6-06 17 28886608 28886608 G A TBC1D29 5'UTR 0.35 TCGA-EE-A2A6-06 17 29848290 29848290 G A RAB11FIP4 Missense_Mutation p.D224N 0.27 tolerated(0.06) probably_damaging(0.97) TCGA-EE-A2A6-06 17 38173119 38173119 C T CSF3 Silent p.F177F 0.28 TCGA-EE-A2A6-06 17 39538630 39538630 C T KRT34 5'UTR 0.30 TCGA-EE-A2A6-06 17 39577720 39577720 C T KRT37 Silent p.L380L 0.28 TCGA-EE-A2A6-06 17 41599484 41599484 C T DHX8 Silent p.F1111F 0.33 TCGA-EE-A2A6-06 17 43552888 43552888 G A PLEKHM1 Silent p.F167F 0.13 TCGA-EE-A2A6-06 17 45487019 45487019 G A EFCAB13 Missense_Mutation p.R747K 0.16 tolerated(0.61) benign(0.013) TCGA-EE-A2A6-06 17 46627847 46627847 C T HOXB3 Missense_Mutation p.G382E 0.41 tolerated(0.06) benign(0.156) TCGA-EE-A2A6-06 17 48632649 48632649 C T SPATA20 Silent p.V738V 0.56 TCGA-EE-A2A6-06 17 51900899 51900899 G A KIF2B Missense_Mutation p.E169K 0.37 deleterious(0.04) benign(0.26) TCGA-EE-A2A6-06 17 54933973 54933973 G A DGKE Missense_Mutation p.R400K 0.50 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A6-06 17 61972654 61972654 C T CSH1 Intron 0.23 TCGA-EE-A2A6-06 17 61995424 61995424 C T GH1 Missense_Mutation p.E82K 0.24 deleterious(0.01) benign(0.09) TCGA-EE-A2A6-06 17 73739891 73739891 G A ITGB4 Silent p.G1020G 0.23 TCGA-EE-A2A6-06 17 73752699 73752699 G A ITGB4 Splice_Site p.X1633_splice 0.41 TCGA-EE-A2A6-06 17 80194103 80194103 G A SLC16A3 Silent p.G73G 0.12 TCGA-EE-A2A6-06 17 8216517 8216517 C T ARHGEF15 Silent p.F293F 0.16 TCGA-EE-A2A6-06 18 11867202 11867202 G A GNAL Missense_Mutation p.R296K 0.16 tolerated(0.18) benign(0.177) TCGA-EE-A2A6-06 18 21338382 21338382 C T LAMA3 Missense_Mutation p.H324Y 0.30 benign(0.097) TCGA-EE-A2A6-06 18 21427530 21427530 T A LAMA3 Missense_Mutation p.F1345Y 0.35 benign(0.32) TCGA-EE-A2A6-06 18 28979241 28979241 G A DSG4 Missense_Mutation p.D338N 0.17 tolerated(0.41) possibly_damaging(0.526) TCGA-EE-A2A6-06 18 346955 346955 G A COLEC12 Silent p.L223L 0.26 TCGA-EE-A2A6-06 19 11152082 11152082 C T SMARCA4 Missense_Mutation p.P1424S 0.23 benign(0.003) TCGA-EE-A2A6-06 19 11326522 11326522 G A DOCK6 Silent p.L1326L 0.33 TCGA-EE-A2A6-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.20 tolerated(0.09) benign(0.03) TCGA-EE-A2A6-06 19 18557179 18557179 C T ELL Silent p.R548R 0.23 TCGA-EE-A2A6-06 19 1881302 1881302 G A ABHD17A Silent p.V88V 0.23 TCGA-EE-A2A6-06 19 21365782 21365782 C T ZNF431 Missense_Mutation p.H226Y 0.17 tolerated(0.21) probably_damaging(0.976) TCGA-EE-A2A6-06 19 31039424 31039424 G A ZNF536 Silent p.R966R 0.18 TCGA-EE-A2A6-06 19 32845425 32845425 C T ZNF507 Silent p.T563T 0.34 TCGA-EE-A2A6-06 19 35827096 35827096 G A CD22 Silent p.S190S 0.32 TCGA-EE-A2A6-06 19 37309763 37309763 G A ZNF790 Nonsense_Mutation p.R495* 0.32 TCGA-EE-A2A6-06 19 40009605 40009605 C T SELV Silent p.V317V 0.29 TCGA-EE-A2A6-06 19 40747872 40747872 G A AKT2 Silent p.I182I 0.28 TCGA-EE-A2A6-06 19 42190876 42190876 G A CEACAM7 Missense_Mutation p.T114I 0.28 deleterious(0.04) benign(0.316) TCGA-EE-A2A6-06 19 42218936 42218936 G A CEACAM5 Silent p.V157V 0.22 TCGA-EE-A2A6-06 19 43097693 43097693 G A CEACAM8 Missense_Mutation p.P142S 0.23 tolerated(0.62) benign(0.015) TCGA-EE-A2A6-06 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.29 tolerated(0.18) possibly_damaging(0.507) TCGA-EE-A2A6-06 19 47763860 47763860 C T CCDC9 Missense_Mutation p.P76S 0.32 tolerated(0.24) benign(0.05) TCGA-EE-A2A6-06 19 50367223 50367223 G A PNKP Nonsense_Mutation p.Q248* 0.32 TCGA-EE-A2A6-06 19 51729249 51729249 C T CD33 Silent p.P203P 0.16 TCGA-EE-A2A6-06 19 53571746 53571746 G A ZNF160 Nonsense_Mutation p.Q681* 0.23 TCGA-EE-A2A6-06 19 54849758 54849758 C T LILRA4 Missense_Mutation p.M88I 0.25 tolerated(0.22) benign(0.01) TCGA-EE-A2A6-06 19 55175661 55175661 C T LILRB4 Missense_Mutation p.S127L 0.20 tolerated(0.13) benign(0.175) TCGA-EE-A2A6-06 19 55378025 55378025 C T KIR3DL2 Missense_Mutation p.H403Y 0.23 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2A6-06 19 55644272 55644272 G A TNNT1 3'UTR 0.22 TCGA-EE-A2A6-06 19 55644273 55644273 G C TNNT1 3'UTR 0.22 TCGA-EE-A2A6-06 19 56423098 56423098 G A NLRP13 Silent p.I695I 0.23 TCGA-EE-A2A6-06 19 57133780 57133780 C T ZNF71 Silent p.I375I 0.12 TCGA-EE-A2A6-06 19 57803142 57803142 C T ZNF460 Silent p.F411F 0.31 TCGA-EE-A2A6-06 19 590554 590554 C T HCN2 Silent p.I203I 0.20 TCGA-EE-A2A6-06 19 6833630 6833630 G A VAV1 Missense_Mutation p.G568R 0.42 deleterious(0.04) possibly_damaging(0.58) TCGA-EE-A2A6-06 19 8175759 8175759 C T FBN3 Missense_Mutation p.E1435K 0.29 tolerated(0.15) probably_damaging(0.921) TCGA-EE-A2A6-06 19 8191396 8191396 G A FBN3 Missense_Mutation p.T837I 0.30 deleterious(0) possibly_damaging(0.827) TCGA-EE-A2A6-06 19 8660783 8660783 C T ADAMTS10 Missense_Mutation p.G448S 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A6-06 19 9059418 9059418 G A MUC16 Missense_Mutation p.S9343L 0.25 unknown(0) TCGA-EE-A2A6-06 19 9062966 9062966 G A MUC16 Silent p.S8160S 0.19 TCGA-EE-A2A6-06 1 100336315 100336315 C T AGL Missense_Mutation p.S283F 0.21 deleterious(0.02) benign(0.077) TCGA-EE-A2A6-06 1 114253057 114253057 T C PHTF1 Missense_Mutation p.N363S 0.21 tolerated(1) benign(0) TCGA-EE-A2A6-06 1 117699392 117699392 G A VTCN1 Silent p.F83F 0.23 TCGA-EE-A2A6-06 1 12343341 12343341 C T VPS13D Missense_Mutation p.H1728Y 0.26 possibly_damaging(0.887) TCGA-EE-A2A6-06 1 12820924 12820924 G A C1orf158 3'UTR 0.32 TCGA-EE-A2A6-06 1 12887371 12887371 C T PRAMEF11 Silent p.V162V 0.27 TCGA-EE-A2A6-06 1 150471004 150471004 C T TARS2 Missense_Mutation p.S422F 0.17 deleterious(0) probably_damaging(0.988) TCGA-EE-A2A6-06 1 151237936 151237936 C T PSMD4 Missense_Mutation p.H169Y 0.34 deleterious(0.03) benign(0.151) TCGA-EE-A2A6-06 1 152128685 152128685 T C RPTN Missense_Mutation p.Q297R 0.21 deleterious(0.02) possibly_damaging(0.638) TCGA-EE-A2A6-06 1 152326343 152326343 C T FLG2 Missense_Mutation p.V1307I 0.17 benign(0.213) TCGA-EE-A2A6-06 1 152327262 152327262 G A FLG2 Silent p.G1000G 0.44 TCGA-EE-A2A6-06 1 153012660 153012660 G A SPRR2D Missense_Mutation p.P55S 0.39 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2A6-06 1 153275001 153275001 G A PGLYRP3 Silent p.V204V 0.35 TCGA-EE-A2A6-06 1 155255737 155255737 G A HCN3 Missense_Mutation p.D487N 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A6-06 1 158262023 158262023 C T CD1C Nonsense_Mutation p.Q160* 0.25 TCGA-EE-A2A6-06 1 158301256 158301256 G A CD1B 5'UTR 0.35 TCGA-EE-A2A6-06 1 160771702 160771702 G T LY9 Intron 0.43 TCGA-EE-A2A6-06 1 16358708 16358708 C T CLCNKA Silent p.I589I 0.22 TCGA-EE-A2A6-06 1 175334325 175334325 C T TNR Missense_Mutation p.R803K 0.24 tolerated(0.58) benign(0.02) TCGA-EE-A2A6-06 1 176661398 176661398 C T PAPPA2 Silent p.T856T 0.18 TCGA-EE-A2A6-06 1 180151450 180151450 C T QSOX1 Missense_Mutation p.P250S 0.23 tolerated(0.06) possibly_damaging(0.71) TCGA-EE-A2A6-06 1 18152383 18152383 T G ACTL8 Missense_Mutation p.V157G 0.17 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2A6-06 1 181727218 181727218 G A CACNA1E Missense_Mutation p.A1489T 0.09 deleterious(0.02) possibly_damaging(0.499) TCGA-EE-A2A6-06 1 19451079 19451079 G A UBR4 Missense_Mutation p.P3182S 0.30 possibly_damaging(0.901) TCGA-EE-A2A6-06 1 203024621 203024621 A G PPFIA4 Missense_Mutation p.T125A 0.51 tolerated(0.46) benign(0.005) TCGA-EE-A2A6-06 1 207803933 207803933 C T CR1 Missense_Mutation p.P2475L 0.55 deleterious_low_confidence(0.01) benign(0.003) TCGA-EE-A2A6-06 1 216246511 216246511 C T USH2A Missense_Mutation p.G1902R 0.51 probably_damaging(0.95) TCGA-EE-A2A6-06 1 22055084 22055084 G A USP48 Nonsense_Mutation p.Q477* 0.29 TCGA-EE-A2A6-06 1 228451886 228451886 C T OBSCN Missense_Mutation p.A1736V 0.13 possibly_damaging(0.874) TCGA-EE-A2A6-06 1 228451887 228451887 C T OBSCN Silent p.A1736A 0.13 TCGA-EE-A2A6-06 1 237433839 237433839 G A RYR2 Missense_Mutation p.E31K 0.62 benign(0.145) TCGA-EE-A2A6-06 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.19 deleterious(0.02) benign(0.33) TCGA-EE-A2A6-06 1 34166119 34166119 G A CSMD2 Missense_Mutation p.S1204F 0.20 tolerated(0.07) benign(0.439) TCGA-EE-A2A6-06 1 43636489 43636489 G A EBNA1BP2 Missense_Mutation p.P184S 0.29 tolerated(0.11) benign(0.381) TCGA-EE-A2A6-06 1 44069823 44069823 C T PTPRF Silent p.S1000S 0.19 TCGA-EE-A2A6-06 1 53600048 53600048 C T SLC1A7 Missense_Mutation p.M63I 0.36 deleterious(0) possibly_damaging(0.862) TCGA-EE-A2A6-06 1 60139762 60139762 C T FGGY Missense_Mutation p.A514V 0.17 deleterious(0) probably_damaging(0.996) TCGA-EE-A2A6-06 1 62675897 62675897 G A L1TD1 Missense_Mutation p.G484E 0.39 tolerated_low_confidence(0.62) possibly_damaging(0.694) TCGA-EE-A2A6-06 1 66458717 66458717 C T PDE4B Intron 0.18 TCGA-EE-A2A6-06 1 67208831 67208831 G A SGIP1 3'UTR 0.22 TCGA-EE-A2A6-06 1 82372750 82372750 C A LPHN2 Missense_Mutation p.S41Y 0.19 deleterious(0) probably_damaging(0.947) TCGA-EE-A2A6-06 1 92946641 92946641 C T GFI1 Silent p.S101S 0.38 TCGA-EE-A2A6-06 20 10030179 10030179 C T ANKEF1 Missense_Mutation p.P321L 0.38 tolerated(0.07) benign(0.215) TCGA-EE-A2A6-06 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.22 deleterious(0) probably_damaging(0.991) TCGA-EE-A2A6-06 20 29960927 29960927 G A DEFB118 Missense_Mutation p.G109E 0.33 tolerated(1) benign(0.002) TCGA-EE-A2A6-06 20 51870436 51870436 C T TSHZ2 Silent p.L147L 0.26 TCGA-EE-A2A6-06 20 54824811 54824811 G A MC3R Silent p.L304L 0.44 TCGA-EE-A2A6-06 20 55108414 55108414 C T FAM209B Missense_Mutation p.S6L 0.31 tolerated(0.32) benign(0.018) TCGA-EE-A2A6-06 20 57766725 57766725 G A ZNF831 Silent p.G217G 0.28 TCGA-EE-A2A6-06 20 62071036 62071036 C T KCNQ2 Missense_Mutation p.G281E 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A6-06 21 11039377 11039377 C T BAGE2 RNA 0.08 TCGA-EE-A2A6-06 21 41496239 41496239 C T DSCAM Silent p.A1193A 0.36 TCGA-EE-A2A6-06 22 18220990 18220990 C T BID Silent p.R169R 0.39 TCGA-EE-A2A6-06 22 22385701 22385701 C T IGLV4-69 Missense_Mutation p.P64S 0.31 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2A6-06 22 29445936 29445936 C T ZNRF3 Silent p.S589S 0.32 TCGA-EE-A2A6-06 22 30866041 30866041 C T SEC14L3 Missense_Mutation p.D67N 0.29 tolerated(0.16) benign(0.043) TCGA-EE-A2A6-06 22 31536233 31536233 G A PLA2G3 Silent p.A36A 0.41 TCGA-EE-A2A6-06 22 41537070 41537070 C T EP300 Silent p.L633L 0.46 TCGA-EE-A2A6-06 22 43831060 43831060 G A MPPED1 Missense_Mutation p.D111N 0.52 deleterious(0) probably_damaging(0.99) TCGA-EE-A2A6-06 2 109513597 109513597 C T EDAR Silent p.V371V 0.34 TCGA-EE-A2A6-06 2 11053719 11053719 C T KCNF1 Silent p.I389I 0.29 TCGA-EE-A2A6-06 2 125521271 125521271 T C CNTNAP5 Missense_Mutation p.S752P 0.17 deleterious(0) possibly_damaging(0.696) TCGA-EE-A2A6-06 2 141079558 141079558 C T LRP1B Missense_Mutation p.G4205D 0.23 probably_damaging(0.931) TCGA-EE-A2A6-06 2 143643031 143643031 A C KYNU Missense_Mutation p.H32P 0.21 tolerated(0.1) benign(0.232) TCGA-EE-A2A6-06 2 1480905 1480905 C T TPO Silent p.F289F 0.29 TCGA-EE-A2A6-06 2 149240855 149240855 C T MBD5 Missense_Mutation p.H899Y 0.21 tolerated(0.32) benign(0.291) TCGA-EE-A2A6-06 2 160284896 160284896 C T BAZ2B Missense_Mutation p.G764R 0.14 probably_damaging(1) TCGA-EE-A2A6-06 2 167322306 167322306 G A SCN7A Missense_Mutation p.P286S 0.42 tolerated(0.88) possibly_damaging(0.529) TCGA-EE-A2A6-06 2 170591984 170591996 CTAGAGAAGGAAT - KLHL23 Frame_Shift_Del p.K156Efs*42 0.17 TCGA-EE-A2A6-06 2 177053525 177053525 G A HOXD1 5'UTR 0.14 TCGA-EE-A2A6-06 2 179583311 179583311 C T TTN Silent p.V8174V 0.28 TCGA-EE-A2A6-06 2 179611999 179611999 G A TTN Intron 0.40 TCGA-EE-A2A6-06 2 182787025 182787025 T A SSFA2 Silent p.V1187V 0.23 TCGA-EE-A2A6-06 2 182852601 182852601 G A PPP1R1C Silent p.V46V 0.23 TCGA-EE-A2A6-06 2 18766227 18766227 C T NT5C1B Silent p.T152T 0.20 TCGA-EE-A2A6-06 2 197086970 197086970 G A HECW2 Missense_Mutation p.L1371F 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2A6-06 2 209190437 209190437 C T PIKFYVE Missense_Mutation p.P968S 0.35 tolerated_low_confidence(0.47) benign(0.014) TCGA-EE-A2A6-06 2 209190438 209190438 C T PIKFYVE Missense_Mutation p.P968L 0.33 tolerated_low_confidence(0.11) benign(0.008) TCGA-EE-A2A6-06 2 211159076 211159076 T C MYL1 Missense_Mutation p.K124R 0.22 tolerated(0.38) probably_damaging(0.953) TCGA-EE-A2A6-06 2 232079550 232079550 C T ARMC9 Missense_Mutation p.L62F 0.19 deleterious(0.05) probably_damaging(0.982) TCGA-EE-A2A6-06 2 27801410 27801410 G A C2orf16 Silent p.V657V 0.18 TCGA-EE-A2A6-06 2 31604555 31604555 G A XDH Missense_Mutation p.S359F 0.12 deleterious(0) probably_damaging(0.971) TCGA-EE-A2A6-06 2 31751295 31751295 G A AL133247.2 5'Flank 0.42 TCGA-EE-A2A6-06 2 32983364 32983364 A G TTC27 Silent p.E486E 0.28 TCGA-EE-A2A6-06 2 33585818 33585818 A G LTBP1 Silent p.E1385E 0.26 TCGA-EE-A2A6-06 2 51254859 51254859 G A NRXN1 Missense_Mutation p.R185C 0.36 deleterious(0.05) benign(0.371) TCGA-EE-A2A6-06 2 74593378 74593378 G A DCTN1 Missense_Mutation p.P918L 0.28 tolerated(0.14) benign(0.071) TCGA-EE-A2A6-06 2 8871350 8871350 C T KIDINS220 Missense_Mutation p.D1606N 0.21 tolerated_low_confidence(0.42) benign(0.044) TCGA-EE-A2A6-06 2 97784202 97784202 C T ANKRD36 Missense_Mutation p.S145F 0.34 deleterious(0.04) probably_damaging(0.95) TCGA-EE-A2A6-06 3 108475928 108475928 G A RETNLB Silent p.I35I 0.41 TCGA-EE-A2A6-06 3 11301941 11301941 C T HRH1 Silent p.H406H 0.30 TCGA-EE-A2A6-06 3 121207238 121207238 G A POLQ Missense_Mutation p.P1514S 0.30 tolerated(0.24) benign(0.01) TCGA-EE-A2A6-06 3 122459884 122459884 G T HSPBAP1 Missense_Mutation p.P301Q 0.25 tolerated(0.07) benign(0.387) TCGA-EE-A2A6-06 3 124449234 124449234 G A UMPS 5'UTR 0.32 TCGA-EE-A2A6-06 3 126142215 126142215 G A CCDC37 Missense_Mutation p.G377E 0.27 tolerated(0.41) benign(0.008) TCGA-EE-A2A6-06 3 130380960 130380960 G A COL6A6 Missense_Mutation p.E2104K 0.16 deleterious(0.05) possibly_damaging(0.677) TCGA-EE-A2A6-06 3 140407233 140407233 G A TRIM42 Missense_Mutation p.G570D 0.25 tolerated(0.33) benign(0.118) TCGA-EE-A2A6-06 3 141497384 141497384 C T GRK7 Silent p.F86F 0.13 TCGA-EE-A2A6-06 3 14905767 14905767 G A FGD5 Silent p.K886K 0.24 TCGA-EE-A2A6-06 3 150931748 150931748 T A P2RY14 Missense_Mutation p.R119S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 3 155203145 155203145 C T PLCH1 Missense_Mutation p.A1000T 0.18 deleterious_low_confidence(0.03) benign(0.003) TCGA-EE-A2A6-06 3 183669325 183669325 C T ABCC5 Missense_Mutation p.E950K 0.30 tolerated(0.91) benign(0.002) TCGA-EE-A2A6-06 3 184075585 184075585 G A CLCN2 Silent p.L225L 0.28 TCGA-EE-A2A6-06 3 186917640 186917640 G A RTP1 Missense_Mutation p.E192K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2A6-06 3 194063009 194063009 G A CPN2 Silent p.F141F 0.23 TCGA-EE-A2A6-06 3 33038624 33038624 G A GLB1 Silent p.T649T 0.25 TCGA-EE-A2A6-06 3 35725549 35725549 G A ARPP21 Intron 0.16 TCGA-EE-A2A6-06 3 44926977 44926977 G A TGM4 Silent p.L60L 0.21 TCGA-EE-A2A6-06 3 46490375 46490375 C T LTF Silent p.E397E 0.30 TCGA-EE-A2A6-06 3 46723548 46723548 C T ALS2CL Silent p.V382V 0.23 TCGA-EE-A2A6-06 3 4859857 4859857 C T ITPR1 Silent p.I2638I 0.25 TCGA-EE-A2A6-06 3 49836714 49836714 C T CDHR4 Missense_Mutation p.S69N 0.32 tolerated(0.13) benign(0.025) TCGA-EE-A2A6-06 3 51274943 51274943 G A DOCK3 Missense_Mutation p.R675Q 0.36 tolerated(1) probably_damaging(0.996) TCGA-EE-A2A6-06 3 51992008 51992008 G A PCBP4 3'UTR 0.21 TCGA-EE-A2A6-06 3 51992009 51992009 G A PCBP4 3'UTR 0.22 TCGA-EE-A2A6-06 3 52539712 52539712 G A STAB1 Missense_Mutation p.G537E 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 3 52853460 52853460 G A ITIH4 Missense_Mutation p.P676S 0.27 tolerated(0.12) possibly_damaging(0.558) TCGA-EE-A2A6-06 3 53265528 53265528 G A TKT Missense_Mutation p.P271S 0.33 tolerated(0.12) benign(0.307) TCGA-EE-A2A6-06 3 53779704 53779704 C T CACNA1D Silent p.I1040I 0.26 TCGA-EE-A2A6-06 3 54959082 54959082 A T LRTM1 Missense_Mutation p.H56Q 0.24 tolerated(0.48) benign(0.047) TCGA-EE-A2A6-06 3 64608226 64608226 C T ADAMTS9 Missense_Mutation p.G809E 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A2A6-06 4 106888537 106888537 G A NPNT Missense_Mutation p.G543E 0.27 tolerated(0.22) probably_damaging(1) TCGA-EE-A2A6-06 4 114170951 114170951 G A ANK2 Missense_Mutation p.R308Q 0.23 probably_damaging(0.999) TCGA-EE-A2A6-06 4 152049406 152049406 C T SH3D19 Missense_Mutation p.E692K 0.24 tolerated(0.08) possibly_damaging(0.517) TCGA-EE-A2A6-06 4 154523767 154523767 C T KIAA0922 Missense_Mutation p.R843C 0.26 tolerated(0.17) possibly_damaging(0.828) TCGA-EE-A2A6-06 4 167020467 167020467 G A TLL1 Missense_Mutation p.D899N 0.23 tolerated(0.23) benign(0.033) TCGA-EE-A2A6-06 4 175898197 175898197 G A ADAM29 Silent p.R507R 0.27 TCGA-EE-A2A6-06 4 177649045 177649045 C T VEGFC Missense_Mutation p.A147T 0.21 tolerated(0.4) benign(0.005) TCGA-EE-A2A6-06 4 187534446 187534446 G A FAT1 Missense_Mutation p.H3094Y 0.31 benign(0.003) TCGA-EE-A2A6-06 4 189013006 189013006 C T TRIML2 Missense_Mutation p.D229N 0.27 tolerated(0.39) benign(0.01) TCGA-EE-A2A6-06 4 20552495 20552495 C T SLIT2 Silent p.F845F 0.13 TCGA-EE-A2A6-06 4 22749261 22749261 C T GBA3 Missense_Mutation p.S210F 0.24 deleterious(0.01) possibly_damaging(0.68) TCGA-EE-A2A6-06 4 38933073 38933073 C T FAM114A1 Missense_Mutation p.A388V 0.29 tolerated(0.11) probably_damaging(1) TCGA-EE-A2A6-06 4 55946083 55946083 G A KDR 3'UTR 0.29 TCGA-EE-A2A6-06 4 5624385 5624385 C T EVC2 Missense_Mutation p.E794K 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A6-06 4 5624386 5624386 C T EVC2 Silent p.G793G 0.30 TCGA-EE-A2A6-06 4 68459033 68459033 G A STAP1 Missense_Mutation p.G262E 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2A6-06 4 77003601 77003601 C T ART3 Nonsense_Mutation p.Q232* 0.23 TCGA-EE-A2A6-06 4 79400617 79400617 G A FRAS1 Missense_Mutation p.D2730N 0.31 probably_damaging(0.957) TCGA-EE-A2A6-06 4 96762199 96762199 C T PDHA2 Missense_Mutation p.R300C 0.22 deleterious(0.02) possibly_damaging(0.538) TCGA-EE-A2A6-06 5 102526637 102526637 C T PPIP5K2 Silent p.S1128S 0.22 TCGA-EE-A2A6-06 5 1217042 1217042 C T SLC6A19 Silent p.I385I 0.26 TCGA-EE-A2A6-06 5 131607052 131607052 C T PDLIM4 Missense_Mutation p.S188F 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A2A6-06 5 13753555 13753555 C T DNAH5 Silent p.R3553R 0.28 TCGA-EE-A2A6-06 5 13829655 13829655 C T DNAH5 Silent p.T2136T 0.35 TCGA-EE-A2A6-06 5 140182605 140182605 C T PCDHA3 Missense_Mutation p.S608L 0.21 tolerated_low_confidence(0.05) benign(0.358) TCGA-EE-A2A6-06 5 140223241 140223241 G A PCDHA8 Missense_Mutation p.D779N 0.24 tolerated_low_confidence(0.38) benign(0.001) TCGA-EE-A2A6-06 5 140236221 140236221 G A PCDHA10 Silent p.R196R 0.29 TCGA-EE-A2A6-06 5 140346714 140346714 G A PCDHAC2 Silent p.L121L 0.34 TCGA-EE-A2A6-06 5 140763535 140763535 C T PCDHGA7 Missense_Mutation p.P357S 0.23 tolerated_low_confidence(0.44) benign(0.074) TCGA-EE-A2A6-06 5 140763536 140763536 C T PCDHGA7 Missense_Mutation p.P357L 0.23 tolerated_low_confidence(0.63) benign(0.104) TCGA-EE-A2A6-06 5 141335520 141335520 C T PCDH12 Missense_Mutation p.E633K 0.27 tolerated(0.27) benign(0.159) TCGA-EE-A2A6-06 5 141384620 141384620 G A GNPDA1 Silent p.T157T 0.28 TCGA-EE-A2A6-06 5 14482699 14482699 C T TRIO Silent p.I2158I 0.29 TCGA-EE-A2A6-06 5 145609352 145609352 C T RBM27 Silent p.Y156Y 0.22 TCGA-EE-A2A6-06 5 147495967 147495967 G A SPINK5 Missense_Mutation p.E684K 0.17 tolerated(0.42) benign(0.049) TCGA-EE-A2A6-06 5 156482325 156482325 G A HAVCR1 Missense_Mutation p.S89F 0.26 deleterious(0) possibly_damaging(0.536) TCGA-EE-A2A6-06 5 158710336 158710336 A T UBLCP1 Missense_Mutation p.K306N 0.19 tolerated(0.59) benign(0.005) TCGA-EE-A2A6-06 5 169141086 169141086 C T DOCK2 Nonsense_Mutation p.R572* 0.24 TCGA-EE-A2A6-06 5 180582804 180582804 C T OR2V2 Missense_Mutation p.P288S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2A6-06 5 26881619 26881619 C T CDH9 Missense_Mutation p.E666K 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A2A6-06 5 476469 476469 C T SLC9A3 Missense_Mutation p.E639K 0.21 tolerated(0.85) benign(0.003) TCGA-EE-A2A6-06 5 5463406 5463406 C T KIAA0947 Missense_Mutation p.P1320L 0.22 tolerated(0.08) benign(0.001) TCGA-EE-A2A6-06 5 65073320 65073320 G A NLN Missense_Mutation p.G173R 0.23 tolerated(0.12) possibly_damaging(0.662) TCGA-EE-A2A6-06 5 7709339 7709339 C T ADCY2 Missense_Mutation p.P473S 0.24 tolerated(0.3) benign(0.011) TCGA-EE-A2A6-06 5 80382667 80382667 G A RASGRF2 Missense_Mutation p.E429K 0.17 deleterious(0) probably_damaging(0.941) TCGA-EE-A2A6-06 5 82948460 82948460 A G HAPLN1 Missense_Mutation p.F95S 0.27 deleterious(0) benign(0.419) TCGA-EE-A2A6-06 5 83360657 83360657 G A EDIL3 Missense_Mutation p.R272C 0.17 tolerated(0.05) possibly_damaging(0.79) TCGA-EE-A2A6-06 6 12296235 12296235 G A EDN1 Missense_Mutation p.D192N 0.26 deleterious(0.02) benign(0.093) TCGA-EE-A2A6-06 6 136582483 136582483 G T BCLAF1 Missense_Mutation p.Q893K 0.12 tolerated(0.14) benign(0.092) TCGA-EE-A2A6-06 6 136599059 136599059 C T BCLAF1 Silent p.S320S 0.15 TCGA-EE-A2A6-06 6 161469968 161469968 C T MAP3K4 Missense_Mutation p.R222C 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2A6-06 6 170871188 170871188 T C TBP Missense_Mutation p.F122L 0.38 tolerated_low_confidence(0.7) benign(0.153) TCGA-EE-A2A6-06 6 22297245 22297245 G A PRL 5'UTR 0.26 TCGA-EE-A2A6-06 6 25661866 25661866 G A SCGN Missense_Mutation p.M80I 0.29 tolerated(1) benign(0.001) TCGA-EE-A2A6-06 6 31079793 31079793 G A C6orf15 Missense_Mutation p.P115S 0.25 deleterious(0.04) probably_damaging(0.932) TCGA-EE-A2A6-06 6 31236852 31236852 G A HLA-C 3'UTR 0.21 TCGA-EE-A2A6-06 6 7373595 7373595 G A CAGE1 Missense_Mutation p.S486F 0.16 deleterious(0) probably_damaging(0.983) TCGA-EE-A2A6-06 7 100153332 100153332 C T AGFG2 Missense_Mutation p.S284L 0.51 tolerated(0.06) benign(0.002) TCGA-EE-A2A6-06 7 100184219 100184219 C T FBXO24 5'Flank 0.44 TCGA-EE-A2A6-06 7 100210447 100210447 G A MOSPD3 Silent p.L11L 0.34 TCGA-EE-A2A6-06 7 100210448 100210448 G A MOSPD3 Missense_Mutation p.V12M 0.33 tolerated_low_confidence(0.06) benign(0.039) TCGA-EE-A2A6-06 7 103202089 103202089 C T RELN Missense_Mutation p.D1807N 0.20 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A2A6-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.57 deleterious(0) probably_damaging(0.967) TCGA-EE-A2A6-06 7 141536194 141536194 C T PRSS37 3'UTR 0.51 TCGA-EE-A2A6-06 7 141765418 141765418 C T MGAM Intron 0.52 TCGA-EE-A2A6-06 7 142723915 142723915 G A OR9A2 Missense_Mutation p.S102F 0.17 tolerated(0.48) benign(0.439) TCGA-EE-A2A6-06 7 143792812 143792812 C T OR2A12 Silent p.F204F 0.19 TCGA-EE-A2A6-06 7 147092834 147092834 C T CNTNAP2 Silent p.F544F 0.23 TCGA-EE-A2A6-06 7 151684324 151684324 G A GALNTL5 Missense_Mutation p.G206R 0.09 deleterious(0.02) probably_damaging(1) TCGA-EE-A2A6-06 7 154143391 154143391 C T DPP6 Silent p.T112T 0.13 TCGA-EE-A2A6-06 7 24663358 24663358 C T MPP6 Silent p.F24F 0.08 TCGA-EE-A2A6-06 7 27148070 27148070 G A HOXA3 Missense_Mutation p.R266C 0.55 deleterious(0.04) benign(0.434) TCGA-EE-A2A6-06 7 48237956 48237956 C T ABCA13 Missense_Mutation p.R96C 0.13 possibly_damaging(0.908) TCGA-EE-A2A6-06 7 48278969 48278969 C T ABCA13 Silent p.V343V 0.15 TCGA-EE-A2A6-06 7 55224588 55224588 C T EGFR Intron 0.15 TCGA-EE-A2A6-06 7 82579037 82579037 G A PCLO Missense_Mutation p.L3623F 0.61 unknown(0) TCGA-EE-A2A6-06 7 82580556 82580556 C T PCLO Silent p.R3116R 0.59 TCGA-EE-A2A6-06 7 99365994 99365994 G A CYP3A4 Missense_Mutation p.P218L 0.16 tolerated(0.11) benign(0.394) TCGA-EE-A2A6-06 8 110457192 110457192 C T PKHD1L1 Silent p.F1698F 0.30 TCGA-EE-A2A6-06 8 113318268 113318268 C T CSMD3 Nonsense_Mutation p.W2680* 0.29 TCGA-EE-A2A6-06 8 133623588 133623588 G A LRRC6 Silent p.I332I 0.26 TCGA-EE-A2A6-06 8 142188277 142188277 G A DENND3 Missense_Mutation p.D860N 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A2A6-06 8 143955741 143955741 G A CYP11B1 3'UTR 0.26 TCGA-EE-A2A6-06 8 145246704 145246704 C T MROH1 Silent p.L267L 0.18 TCGA-EE-A2A6-06 8 17863888 17863888 A G PCM1 Silent p.Q1648Q 0.16 TCGA-EE-A2A6-06 8 2057229 2057229 G A MYOM2 Silent p.K1029K 0.22 TCGA-EE-A2A6-06 8 2057230 2057230 G A MYOM2 Missense_Mutation p.G1030R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2A6-06 8 23708982 23708982 G A STC1 Silent p.F108F 0.28 TCGA-EE-A2A6-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.29 TCGA-EE-A2A6-06 8 24350590 24350590 G A ADAM7 Missense_Mutation p.G564R 0.21 deleterious(0.01) possibly_damaging(0.585) TCGA-EE-A2A6-06 8 38065064 38065064 C T BAG4 Missense_Mutation p.P138L 0.35 deleterious(0) possibly_damaging(0.448) TCGA-EE-A2A6-06 8 39626988 39626988 G A ADAM2 Missense_Mutation p.P379S 0.29 tolerated(0.12) benign(0.064) TCGA-EE-A2A6-06 8 49831426 49831426 G A SNAI2 Silent p.T249T 0.21 TCGA-EE-A2A6-06 8 55533670 55533670 C T RP1 Silent p.F48F 0.39 TCGA-EE-A2A6-06 8 56985769 56985769 G A RPS20 Silent p.F80F 0.19 TCGA-EE-A2A6-06 8 68939480 68939480 G A PREX2 Silent p.R155R 0.14 TCGA-EE-A2A6-06 8 95262690 95262690 C T GEM Missense_Mutation p.E247K 0.21 deleterious(0.04) possibly_damaging(0.736) TCGA-EE-A2A6-06 9 104319879 104319879 G A RNF20 Splice_Site p.X794_splice 0.22 TCGA-EE-A2A6-06 9 113704020 113704020 C T LPAR1 Silent p.R158R 0.18 TCGA-EE-A2A6-06 9 119202937 119202937 C T ASTN2 Missense_Mutation p.E1194K 0.13 deleterious(0) unknown(0) TCGA-EE-A2A6-06 9 127262838 127262838 G A NR5A1 Missense_Mutation p.P134L 0.35 tolerated(0.74) benign(0.001) TCGA-EE-A2A6-06 9 129870331 129870331 G A ANGPTL2 Missense_Mutation p.P227L 0.42 tolerated(0.96) benign(0.057) TCGA-EE-A2A6-06 9 130111261 130111261 C T GARNL3 Missense_Mutation p.P497L 0.23 tolerated(0.27) possibly_damaging(0.572) TCGA-EE-A2A6-06 9 130984795 130984795 C T DNM1 Nonsense_Mutation p.Q350* 0.25 TCGA-EE-A2A6-06 9 131761556 131761556 C T NUP188 Silent p.F1207F 0.29 TCGA-EE-A2A6-06 9 136389886 136389886 C T TMEM8C Silent p.K27K 0.23 TCGA-EE-A2A6-06 9 137666747 137666747 C T COL5A1 Nonsense_Mutation p.R792* 0.26 TCGA-EE-A2A6-06 9 138662844 138662844 C T KCNT1 Silent p.F637F 0.13 TCGA-EE-A2A6-06 9 139273457 139273457 G A SNAPC4 Missense_Mutation p.P941L 0.20 deleterious(0) benign(0.212) TCGA-EE-A2A6-06 9 21971116 21971116 G A CDKN2A Missense_Mutation p.P81L 0.36 deleterious(0) probably_damaging(0.981) TCGA-EE-A2A6-06 9 35749252 35749252 G A RGP1 5'Flank 0.55 TCGA-EE-A2A6-06 9 3937029 3937029 G A GLIS3 Missense_Mutation p.T624I 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A2A6-06 9 43627091 43627091 G A SPATA31A6 Silent p.S532S 0.27 TCGA-EE-A2A6-06 9 4625355 4625355 C T SPATA6L Missense_Mutation p.G156E 0.47 tolerated(1) benign(0.237) TCGA-EE-A2A6-06 9 78804604 78804604 C T PCSK5 Silent p.C856C 0.19 TCGA-EE-A2A6-06 9 79324474 79324474 G A PRUNE2 Missense_Mutation p.P906S 0.27 tolerated(0.21) benign(0.156) TCGA-EE-A2A6-06 9 80049349 80049349 T C GNA14 Silent p.Q133Q 0.33 TCGA-EE-A2A6-06 9 82267687 82267687 C T TLE4 Silent p.H190H 0.13 TCGA-EE-A2A6-06 9 94486979 94486979 G A ROR2 Silent p.I599I 0.29 TCGA-EE-A2A6-06 X 107815064 107815064 G A COL4A5 Missense_Mutation p.M154I 0.61 unknown(0) TCGA-EE-A2A6-06 X 12939508 12939508 C T TLR8 Silent p.F783F 0.59 TCGA-EE-A2A6-06 X 132458250 132458250 T A GPC4 Missense_Mutation p.T212S 0.67 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A2A6-06 X 150911752 150911752 C A CNGA2 Missense_Mutation p.F259L 0.09 deleterious(0.03) benign(0.046) TCGA-EE-A2A6-06 X 151302981 151302981 C T MAGEA10 3'UTR 0.52 TCGA-EE-A2A6-06 X 152225782 152225782 C T PNMA3 Missense_Mutation p.L124F 0.43 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A2A6-06 X 152938025 152938025 G A PNCK Missense_Mutation p.R149C 0.57 deleterious(0.02) benign(0.078) TCGA-EE-A2A6-06 X 152938026 152938026 G A PNCK Silent p.L148L 0.56 TCGA-EE-A2A6-06 X 155233493 155233493 G A IL9R Missense_Mutation p.D136N 0.36 tolerated(0.27) possibly_damaging(0.848) TCGA-EE-A2A6-06 X 2933118 2933118 G A ARSH Missense_Mutation p.D150N 0.62 deleterious(0.05) benign(0.215) TCGA-EE-A2A6-06 X 3228297 3228297 G A MXRA5 Silent p.I2649I 0.47 TCGA-EE-A2A6-06 X 53455528 53455528 G A RIBC1 Missense_Mutation p.R166K 0.50 tolerated(0.64) benign(0.005) TCGA-EE-A2A6-06 X 54185883 54185883 G A FAM120C Missense_Mutation p.T289I 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2A6-06 X 64959629 64959629 C T MSN Silent p.S536S 0.52 TCGA-EE-A2A6-06 X 67938118 67938118 C T STARD8 Silent p.A454A 0.44 TCGA-EE-A2A6-06 X 70093151 70093151 C T TEX11 Missense_Mutation p.E71K 0.45 tolerated(0.05) benign(0.07) TCGA-EE-A2A6-06 X 71870319 71870319 C T PHKA1 Splice_Site p.X416_splice 0.47 TCGA-EE-A2A6-06 X 73068856 73068856 G A XIST RNA 0.43 TCGA-EE-A2A6-06 X 84520196 84520196 G A ZNF711 Missense_Mutation p.R284Q 0.70 tolerated(0.22) probably_damaging(0.971) TCGA-EE-A2GB-06 10 105810657 105810657 G A COL17A1 Missense_Mutation p.P681S 0.77 unknown(0) TCGA-EE-A2GB-06 10 111624868 111624868 A G XPNPEP1 3'UTR 0.79 TCGA-EE-A2GB-06 10 127753538 127753538 G A ADAM12 Silent p.S485S 0.64 TCGA-EE-A2GB-06 10 133978234 133978234 G A JAKMIP3 Missense_Mutation p.E827K 0.63 deleterious(0) unknown(0) TCGA-EE-A2GB-06 10 134008372 134008372 G T DPYSL4 Missense_Mutation p.G113C 0.81 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GB-06 10 21414812 21414812 G A C10orf113 Silent p.F136F 0.31 TCGA-EE-A2GB-06 10 22830952 22830952 C T PIP4K2A Missense_Mutation p.D273N 0.88 deleterious(0.02) possibly_damaging(0.678) TCGA-EE-A2GB-06 10 24816916 24816916 G A KIAA1217 Missense_Mutation p.G984R 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 10 26849092 26849092 G A APBB1IP Missense_Mutation p.R405K 0.36 tolerated(0.23) benign(0.098) TCGA-EE-A2GB-06 10 34573111 34573111 G A PARD3 Missense_Mutation p.S1046F 0.71 tolerated(0.06) benign(0.282) TCGA-EE-A2GB-06 10 37421200 37421200 G A ANKRD30A Silent p.T125T 0.74 TCGA-EE-A2GB-06 10 37482150 37482150 G A ANKRD30A Missense_Mutation p.A804T 0.75 deleterious(0.01) benign(0.066) TCGA-EE-A2GB-06 10 43662469 43662469 C T CSGALNACT2 Missense_Mutation p.P393S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 10 44112785 44112785 C T ZNF485 Missense_Mutation p.H432Y 0.72 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GB-06 10 46999878 46999878 A G GPRIN2 Missense_Mutation p.Q333R 0.41 tolerated(0.43) probably_damaging(0.998) TCGA-EE-A2GB-06 10 49654486 49654486 G A ARHGAP22 Missense_Mutation p.S698L 0.67 deleterious(0) benign(0.089) TCGA-EE-A2GB-06 10 49663151 49663151 G A ARHGAP22 Missense_Mutation p.S245F 0.36 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GB-06 10 50255027 50255027 C T VSTM4 Splice_Site p.X279_splice 0.72 TCGA-EE-A2GB-06 10 50255028 50255028 C T VSTM4 Silent p.L279L 0.72 TCGA-EE-A2GB-06 10 52008287 52008287 G A ASAH2 Silent p.L28L 0.72 TCGA-EE-A2GB-06 10 55581797 55581797 C T PCDH15 Missense_Mutation p.A1899T 0.78 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GB-06 10 6061880 6061880 G A IL2RA Missense_Mutation p.P203L 0.29 tolerated(0.82) benign(0.001) TCGA-EE-A2GB-06 10 61412481 61412481 C T SLC16A9 3'UTR 0.56 TCGA-EE-A2GB-06 10 7811239 7811239 C T KIN Silent p.Q246Q 0.84 TCGA-EE-A2GB-06 10 90582717 90582717 A G ANKRD22 Missense_Mutation p.M186T 0.78 tolerated(0.06) benign(0.133) TCGA-EE-A2GB-06 10 97096831 97096831 G A SORBS1 Missense_Mutation p.P1029L 0.86 deleterious_low_confidence(0) benign(0.11) TCGA-EE-A2GB-06 11 108412425 108412425 T C EXPH5 Silent p.L78L 0.77 TCGA-EE-A2GB-06 11 112088573 112088573 C T BCO2 Silent p.F572F 0.82 TCGA-EE-A2GB-06 11 116643688 116643688 G A BUD13 5'UTR 0.81 TCGA-EE-A2GB-06 11 117869953 117869953 G A IL10RA Missense_Mutation p.G445D 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 11 118773008 118773008 G A BCL9L Missense_Mutation p.P482S 0.41 probably_damaging(0.99) TCGA-EE-A2GB-06 11 119228237 119228237 G A USP2 Missense_Mutation p.P522L 0.78 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GB-06 11 120175804 120175804 C T POU2F3 Silent p.L172L 0.71 TCGA-EE-A2GB-06 11 121428069 121428069 C T SORL1 Missense_Mutation p.S873F 0.69 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2GB-06 11 124180299 124180299 G A OR8D1 Missense_Mutation p.R122C 0.47 deleterious(0.01) benign(0.015) TCGA-EE-A2GB-06 11 1464587 1464587 A G BRSK2 Missense_Mutation p.K242R 0.17 tolerated(0.42) benign(0.007) TCGA-EE-A2GB-06 11 14901713 14901713 A G CYP2R1 Silent p.I323I 0.42 TCGA-EE-A2GB-06 11 16774376 16774376 C T C11orf58 Nonsense_Mutation p.Q85* 0.23 TCGA-EE-A2GB-06 11 18955687 18955687 G A MRGPRX1 Silent p.Y215Y 0.22 TCGA-EE-A2GB-06 11 21592418 21592418 C T NELL1 Nonsense_Mutation p.Q697* 0.44 TCGA-EE-A2GB-06 11 27114840 27114840 G A BBOX1 Missense_Mutation p.G154R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 11 27114841 27114841 G A BBOX1 Missense_Mutation p.G154E 0.45 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GB-06 11 27362301 27362301 C T CCDC34 Silent p.A283A 0.38 TCGA-EE-A2GB-06 11 293411 293411 C T ATHL1 Silent p.I463I 0.33 TCGA-EE-A2GB-06 11 293412 293412 C T ATHL1 Missense_Mutation p.P464S 0.35 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GB-06 11 30255338 30255338 G A FSHB Missense_Mutation p.M127I 0.52 tolerated(0.34) benign(0) TCGA-EE-A2GB-06 11 34533099 34533099 G A ELF5 Silent p.H6H 0.17 TCGA-EE-A2GB-06 11 4127421 4127421 A G RRM1 Missense_Mutation p.N85S 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.715) TCGA-EE-A2GB-06 11 45948962 45948962 C T GYLTL1B Silent p.F474F 0.24 TCGA-EE-A2GB-06 11 4608339 4608339 G A OR52I2 Silent p.V99V 0.19 TCGA-EE-A2GB-06 11 47266324 47266324 C T ACP2 Missense_Mutation p.G245E 0.44 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GB-06 11 47266325 47266325 C T ACP2 Missense_Mutation p.G245R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 11 47372982 47372982 C T MYBPC3 Missense_Mutation p.E34K 0.52 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-EE-A2GB-06 11 48510571 48510571 C T OR4A47 Missense_Mutation p.S76F 0.45 deleterious_low_confidence(0.01) benign(0.008) TCGA-EE-A2GB-06 11 49214396 49214396 A T FOLH1 Silent p.V154V 0.37 TCGA-EE-A2GB-06 11 4967729 4967729 C T OR51A4 Missense_Mutation p.G201D 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GB-06 11 4968057 4968057 G T OR51A4 Missense_Mutation p.P92T 0.46 tolerated(0.35) benign(0.004) TCGA-EE-A2GB-06 11 5373574 5373574 C T OR51B6 Silent p.F279F 0.47 TCGA-EE-A2GB-06 11 5411279 5411279 C T OR51M1 Silent p.F217F 0.45 TCGA-EE-A2GB-06 11 55322535 55322535 G A OR4C15 Missense_Mutation p.M251I 0.44 tolerated_low_confidence(0.05) benign(0) TCGA-EE-A2GB-06 11 55371784 55371784 C T OR4C11 Silent p.Q22Q 0.94 TCGA-EE-A2GB-06 11 55587294 55587294 C T OR5D18 Silent p.F63F 0.39 TCGA-EE-A2GB-06 11 55594730 55594730 C T OR5L2 Silent p.F12F 0.34 TCGA-EE-A2GB-06 11 56086329 56086329 C T OR8K3 Missense_Mutation p.P183S 0.30 deleterious_low_confidence(0.05) possibly_damaging(0.718) TCGA-EE-A2GB-06 11 56184981 56184981 G A OR5R1 Missense_Mutation p.S243F 0.35 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GB-06 11 56230507 56230507 C T OR5M9 Missense_Mutation p.G124D 0.35 deleterious(0) benign(0.001) TCGA-EE-A2GB-06 11 56510788 56510788 C T OR9G4 Missense_Mutation p.G167E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 11 5905795 5905795 C T OR52E4 Silent p.L91L 0.20 TCGA-EE-A2GB-06 11 59940458 59940458 G A MS4A6A 3'UTR 0.42 TCGA-EE-A2GB-06 11 60637245 60637245 C T ZP1 Missense_Mutation p.P185L 0.37 tolerated(0.11) benign(0.004) TCGA-EE-A2GB-06 11 62435236 62435236 G T METTL12 3'UTR 0.50 TCGA-EE-A2GB-06 11 66359618 66359618 G A CCDC87 Missense_Mutation p.P290L 0.42 tolerated(0.66) benign(0.002) TCGA-EE-A2GB-06 11 67072263 67072263 C T SSH3 Missense_Mutation p.R42C 0.57 deleterious(0) possibly_damaging(0.776) TCGA-EE-A2GB-06 11 67258443 67258443 C T AIP Silent p.F324F 0.48 TCGA-EE-A2GB-06 11 67267576 67267576 G A PITPNM1 Silent p.S319S 0.10 TCGA-EE-A2GB-06 11 71945360 71945360 T C INPPL1 Missense_Mutation p.F750L 0.36 tolerated(0.36) benign(0.085) TCGA-EE-A2GB-06 11 72294558 72294558 G A PDE2A Missense_Mutation p.S551F 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GB-06 11 73020361 73020361 G A ARHGEF17 Silent p.G226G 0.37 TCGA-EE-A2GB-06 11 74716559 74716559 C T NEU3 Silent p.F136F 0.57 TCGA-EE-A2GB-06 11 74716573 74716573 G T NEU3 Missense_Mutation p.R141L 0.46 tolerated(0.44) benign(0.041) TCGA-EE-A2GB-06 11 75146491 75146491 C T GDPD5 3'UTR 0.53 TCGA-EE-A2GB-06 11 75146492 75146492 C T GDPD5 3'UTR 0.53 TCGA-EE-A2GB-06 11 8008857 8008857 G A EIF3F 5'UTR 0.40 TCGA-EE-A2GB-06 11 92538510 92538510 G A FAT3 Missense_Mutation p.D3030N 0.79 benign(0.009) TCGA-EE-A2GB-06 11 92569774 92569774 C T FAT3 Missense_Mutation p.H3377Y 0.76 benign(0.002) TCGA-EE-A2GB-06 12 100928794 100928794 C T NR1H4 Missense_Mutation p.S252L 0.62 tolerated(0.75) benign(0) TCGA-EE-A2GB-06 12 105568156 105568156 T C APPL2 Missense_Mutation p.N650S 0.44 tolerated(0.41) benign(0.005) TCGA-EE-A2GB-06 12 10999753 10999753 G T PRR4 Missense_Mutation p.P105H 0.43 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-EE-A2GB-06 12 111099079 111099079 C T HVCN1 Missense_Mutation p.E66K 0.51 tolerated_low_confidence(0.1) possibly_damaging(0.538) TCGA-EE-A2GB-06 12 111779803 111779803 C T CUX2 Missense_Mutation p.S1202F 0.49 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GB-06 12 112616865 112616865 G A HECTD4 Missense_Mutation p.P3599S 0.25 benign(0.002) TCGA-EE-A2GB-06 12 113344864 113344864 C T OAS1 Missense_Mutation p.T7I 0.32 tolerated(0.1) probably_damaging(0.924) TCGA-EE-A2GB-06 12 117962911 117962911 G A KSR2 Silent p.F655F 0.43 TCGA-EE-A2GB-06 12 12022615 12022615 G A ETV6 Missense_Mutation p.E241K 0.26 tolerated(0.1) benign(0.13) TCGA-EE-A2GB-06 12 121947408 121947408 C T KDM2B Missense_Mutation p.G537S 0.36 tolerated(0.06) possibly_damaging(0.772) TCGA-EE-A2GB-06 12 121947409 121947409 C T KDM2B Silent p.E536E 0.33 TCGA-EE-A2GB-06 12 123286060 123286060 C T CCDC62 Missense_Mutation p.S456F 0.50 deleterious(0.02) possibly_damaging(0.812) TCGA-EE-A2GB-06 12 124414959 124414959 G A DNAH10 Missense_Mutation p.G4090E 0.40 probably_damaging(1) TCGA-EE-A2GB-06 12 18891105 18891105 G A CAPZA3 5'UTR 0.54 TCGA-EE-A2GB-06 12 21329726 21329726 G A SLCO1B1 Missense_Mutation p.E126K 0.31 tolerated(0.08) benign(0.12) TCGA-EE-A2GB-06 12 21427461 21427461 C T SLCO1A2 Missense_Mutation p.G579R 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GB-06 12 21926604 21926604 C T KCNJ8 5'UTR 0.52 TCGA-EE-A2GB-06 12 21971126 21971126 C T ABCC9 Silent p.S1243S 0.37 TCGA-EE-A2GB-06 12 22659723 22659723 G A C2CD5 Missense_Mutation p.P357S 0.19 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GB-06 12 30833476 30833476 G A IPO8 Silent p.S193S 0.21 TCGA-EE-A2GB-06 12 369215 369215 C T SLC6A13 Missense_Mutation p.D2N 0.46 deleterious(0.02) benign(0.388) TCGA-EE-A2GB-06 12 40689422 40689422 G A LRRK2 Silent p.T1024T 0.41 TCGA-EE-A2GB-06 12 46591720 46591720 C T SLC38A1 Missense_Mutation p.D416N 0.45 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2GB-06 12 49254822 49254822 C T RND1 Missense_Mutation p.M137I 0.42 tolerated(0.11) benign(0.004) TCGA-EE-A2GB-06 12 50854978 50854978 C T LARP4 Silent p.S394S 0.38 TCGA-EE-A2GB-06 12 52450363 52450363 C T NR4A1 Silent p.L377L 0.45 TCGA-EE-A2GB-06 12 52979640 52979640 G A KRT72 3'UTR 0.50 TCGA-EE-A2GB-06 12 53227863 53227863 C T KRT79 Missense_Mutation p.S61N 0.48 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GB-06 12 56561897 56561897 T C SMARCC2 Missense_Mutation p.K902E 0.46 deleterious(0) benign(0.292) TCGA-EE-A2GB-06 12 57502002 57502002 G C STAT6 Silent p.V20V 0.19 TCGA-EE-A2GB-06 12 57850391 57850391 C T INHBE Silent p.Y271Y 0.25 TCGA-EE-A2GB-06 12 57850536 57850536 C T INHBE Nonsense_Mutation p.R320* 0.30 TCGA-EE-A2GB-06 12 57962771 57962771 C T KIF5A Missense_Mutation p.A247V 0.21 deleterious(0.02) benign(0.134) TCGA-EE-A2GB-06 12 57962772 57962772 C T KIF5A Silent p.A247A 0.21 TCGA-EE-A2GB-06 12 64202862 64202862 A G TMEM5 Missense_Mutation p.N441S 0.46 tolerated(0.09) benign(0.003) TCGA-EE-A2GB-06 12 64668753 64668753 T A C12orf56 Silent p.G344G 0.33 TCGA-EE-A2GB-06 12 64668754 64668754 C T C12orf56 Missense_Mutation p.G344E 0.33 deleterious(0.02) benign(0.429) TCGA-EE-A2GB-06 12 68051037 68051037 C G DYRK2 Missense_Mutation p.T117R 0.26 tolerated_low_confidence(0.29) benign(0.001) TCGA-EE-A2GB-06 12 70928359 70928359 C T PTPRB Missense_Mutation p.E2093K 0.48 deleterious(0) probably_damaging(0.944) TCGA-EE-A2GB-06 12 70953309 70953309 C T PTPRB Missense_Mutation p.D1510N 0.36 tolerated(0.08) probably_damaging(0.923) TCGA-EE-A2GB-06 12 71148424 71148424 C T PTPRR Intron 0.49 TCGA-EE-A2GB-06 12 71518931 71518931 C T TSPAN8 3'UTR 0.38 TCGA-EE-A2GB-06 12 7242311 7242311 G A C1R Missense_Mutation p.S147F 0.41 tolerated(0.08) benign(0.019) TCGA-EE-A2GB-06 12 7635276 7635276 G A CD163 Silent p.F1070F 0.41 TCGA-EE-A2GB-06 12 76425374 76425374 G C PHLDA1 Missense_Mutation p.P50A 0.29 deleterious_low_confidence(0.05) benign(0.009) TCGA-EE-A2GB-06 12 80665537 80665537 C T OTOGL Silent p.N867N 0.46 TCGA-EE-A2GB-06 12 80730237 80730237 G A OTOGL Missense_Mutation p.G1540R 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 12 82751030 82751030 C T CCDC59 Missense_Mutation p.R58Q 0.44 tolerated(0.15) benign(0.103) TCGA-EE-A2GB-06 12 8375235 8375235 G A FAM90A1 Missense_Mutation p.S193F 0.45 tolerated(0.55) possibly_damaging(0.898) TCGA-EE-A2GB-06 12 9072355 9072355 C T PHC1 Silent p.L40L 0.43 TCGA-EE-A2GB-06 12 9086523 9086523 C T PHC1 Silent p.V652V 0.48 TCGA-EE-A2GB-06 12 91502014 91502014 C T LUM Missense_Mutation p.G248E 0.48 tolerated(0.09) probably_damaging(0.922) TCGA-EE-A2GB-06 12 9248254 9248254 C T A2M Missense_Mutation p.G632R 0.47 tolerated(0.28) benign(0.001) TCGA-EE-A2GB-06 12 9265130 9265130 G A A2M Silent p.V91V 0.13 TCGA-EE-A2GB-06 12 9266120 9266120 G A A2M Missense_Mutation p.P36S 0.12 deleterious(0.01) benign(0.197) TCGA-EE-A2GB-06 13 111953096 111953096 T C ARHGEF7 Silent p.S555S 0.36 TCGA-EE-A2GB-06 13 21362747 21362747 G A XPO4 Silent p.T975T 0.18 TCGA-EE-A2GB-06 13 31722162 31722162 C T HSPH1 Missense_Mutation p.G438R 0.43 deleterious(0.04) possibly_damaging(0.635) TCGA-EE-A2GB-06 13 32371395 32371395 C T RXFP2 Missense_Mutation p.S615F 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GB-06 13 33629429 33629429 G A KL Missense_Mutation p.G526R 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 13 37567800 37567800 G A ALG5 Missense_Mutation p.P99S 0.45 tolerated(0.38) benign(0.023) TCGA-EE-A2GB-06 13 41797453 41797453 T A MTRF1 Missense_Mutation p.Y388F 0.26 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GB-06 13 49086897 49086897 A G RCBTB2 Missense_Mutation p.Y162H 0.38 tolerated(1) benign(0.004) TCGA-EE-A2GB-06 13 52603485 52603485 C T UTP14C Missense_Mutation p.P182L 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2GB-06 13 58208628 58208628 C T PCDH17 Missense_Mutation p.P650S 0.34 tolerated(0.39) benign(0.034) TCGA-EE-A2GB-06 13 75863150 75863150 C T TBC1D4 Missense_Mutation p.D1195N 0.46 tolerated(0.09) possibly_damaging(0.451) TCGA-EE-A2GB-06 13 76111999 76111999 C T COMMD6 5'Flank 0.38 TCGA-EE-A2GB-06 13 97484772 97484772 G A HS6ST3 Missense_Mutation p.D246N 0.50 tolerated(0.1) possibly_damaging(0.677) TCGA-EE-A2GB-06 13 99114116 99114116 G A STK24 Missense_Mutation p.S334F 0.45 tolerated(0.11) benign(0.005) TCGA-EE-A2GB-06 14 102516134 102516134 C T DYNC1H1 Silent p.S4533S 0.83 TCGA-EE-A2GB-06 14 106573654 106573654 G A IGHV3-11 Silent p.F9F 0.31 TCGA-EE-A2GB-06 14 106610532 106610532 G A IGHV3-15 Silent p.F46F 0.82 TCGA-EE-A2GB-06 14 106805449 106805449 G A IGHV4-31 Silent p.S38S 0.15 TCGA-EE-A2GB-06 14 107211365 107211365 G A IGHV3-73 Silent p.F9F 0.25 TCGA-EE-A2GB-06 14 19566060 19566060 C T POTEG Silent p.V368V 0.15 TCGA-EE-A2GB-06 14 20389033 20389033 G A OR4K5 Missense_Mutation p.E90K 0.29 tolerated(1) benign(0) TCGA-EE-A2GB-06 14 20665683 20665683 C T OR11G2 Silent p.I63I 0.27 TCGA-EE-A2GB-06 14 22205223 22205223 C T TRAV4 Missense_Mutation p.S96F 0.32 deleterious(0.02) benign(0.193) TCGA-EE-A2GB-06 14 23235902 23235902 C T OXA1L Missense_Mutation p.P58S 0.27 tolerated_low_confidence(0.46) benign(0.004) TCGA-EE-A2GB-06 14 24618730 24618730 C T RNF31 Silent p.S249S 0.46 TCGA-EE-A2GB-06 14 45497485 45497485 C T FAM179B Missense_Mutation p.S1204F 0.30 deleterious(0.02) benign(0.123) TCGA-EE-A2GB-06 14 60212874 60212874 C T RTN1 Missense_Mutation p.M189I 0.48 deleterious(0.01) benign(0.073) TCGA-EE-A2GB-06 14 65252634 65252634 G A SPTB Silent p.S1199S 0.52 TCGA-EE-A2GB-06 14 65271708 65271708 C T SPTB Silent p.R83R 0.68 TCGA-EE-A2GB-06 14 65381170 65381170 C T CHURC1 Missense_Mutation p.S13F 0.32 tolerated_low_confidence(0.07) benign(0.129) TCGA-EE-A2GB-06 14 73731380 73731380 G A PAPLN Missense_Mutation p.G997E 0.29 tolerated(0.4) benign(0.072) TCGA-EE-A2GB-06 14 74975338 74975338 G A LTBP2 Silent p.F1207F 0.38 TCGA-EE-A2GB-06 14 77718140 77718140 C T TMEM63C Missense_Mutation p.H683Y 0.34 tolerated(0.13) probably_damaging(0.943) TCGA-EE-A2GB-06 14 81610130 81610130 C T TSHR Silent p.T576T 0.22 TCGA-EE-A2GB-06 14 91739163 91739163 C T CCDC88C Missense_Mutation p.G1965R 0.46 tolerated(0.12) benign(0.167) TCGA-EE-A2GB-06 15 101523787 101523787 C T LRRK1 Silent p.L106L 0.64 TCGA-EE-A2GB-06 15 20170069 20170069 C T IGHV1OR15-9 Missense_Mutation p.G68E 0.53 deleterious(0.01) probably_damaging(0.917) TCGA-EE-A2GB-06 15 24922182 24922182 A G NPAP1 Missense_Mutation p.T390A 0.25 tolerated(1) benign(0.021) TCGA-EE-A2GB-06 15 25310191 25310191 C T SNORD116-6 RNA 0.29 TCGA-EE-A2GB-06 15 33925182 33925182 C T RYR3 Missense_Mutation p.P967L 0.27 probably_damaging(1) TCGA-EE-A2GB-06 15 34649449 34649449 C T NUTM1 Silent p.S1052S 0.26 TCGA-EE-A2GB-06 15 34649450 34649450 C T NUTM1 Missense_Mutation p.H1053Y 0.26 tolerated(0.42) benign(0.002) TCGA-EE-A2GB-06 15 34673702 34673702 C T GOLGA8A Silent p.E574E 0.19 TCGA-EE-A2GB-06 15 35274609 35274609 G A ZNF770 Missense_Mutation p.L343F 0.31 tolerated(0.06) benign(0.027) TCGA-EE-A2GB-06 15 40599844 40599844 G A PLCB2 Silent p.P10P 0.41 TCGA-EE-A2GB-06 15 41819137 41819137 G A RPAP1 Missense_Mutation p.R626C 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 15 42476896 42476896 C T VPS39 Silent p.V179V 0.26 TCGA-EE-A2GB-06 15 42717188 42717188 G A ZNF106 Silent p.G1655G 0.29 TCGA-EE-A2GB-06 15 43748831 43748831 G A TP53BP1 Missense_Mutation p.H659Y 0.20 tolerated(0.75) benign(0.377) TCGA-EE-A2GB-06 15 43748832 43748832 G A TP53BP1 Silent p.H658H 0.21 TCGA-EE-A2GB-06 15 43826867 43826867 G A PPIP5K1 3'UTR 0.28 TCGA-EE-A2GB-06 15 44153570 44153570 C T WDR76 Silent p.L534L 0.23 TCGA-EE-A2GB-06 15 45399580 45399580 G A DUOX2 Silent p.P552P 0.29 TCGA-EE-A2GB-06 15 54542545 54542545 C T UNC13C Silent p.L1117L 0.24 TCGA-EE-A2GB-06 15 54919182 54919182 G A UNC13C Silent p.L2172L 0.46 TCGA-EE-A2GB-06 15 63414106 63414106 T A LACTB Silent p.A12A 0.55 TCGA-EE-A2GB-06 15 63631051 63631051 C T CA12 Missense_Mutation p.D281N 0.29 tolerated(0.32) benign(0.36) TCGA-EE-A2GB-06 15 64673613 64673613 C T KIAA0101 5'UTR 0.30 TCGA-EE-A2GB-06 15 65499223 65499223 C T CILP Silent p.Q107Q 0.60 TCGA-EE-A2GB-06 15 72551976 72551976 G A PARP6 Silent p.P261P 0.53 TCGA-EE-A2GB-06 15 73621928 73621928 G A HCN4 Nonsense_Mutation p.Q526* 0.70 TCGA-EE-A2GB-06 15 74425088 74425088 G A ISLR2 Intron 0.36 TCGA-EE-A2GB-06 15 76496210 76496210 G A C15orf27 Missense_Mutation p.A384T 0.29 tolerated_low_confidence(0.18) benign(0.004) TCGA-EE-A2GB-06 15 78921795 78921795 G A CHRNB4 Silent p.I284I 0.45 TCGA-EE-A2GB-06 15 80253445 80253445 G A BCL2A1 Silent p.I164I 0.48 TCGA-EE-A2GB-06 15 83680267 83680267 C T C15orf40 Silent p.K31K 0.23 TCGA-EE-A2GB-06 15 84558914 84558914 C T ADAMTSL3 Missense_Mutation p.P376S 0.53 deleterious(0.04) benign(0.293) TCGA-EE-A2GB-06 15 93567671 93567671 C T CHD2 Silent p.F1741F 0.46 TCGA-EE-A2GB-06 15 93567672 93567672 C T CHD2 Nonsense_Mutation p.R1742* 0.45 TCGA-EE-A2GB-06 16 14014015 14014015 G A ERCC4 5'UTR 0.47 TCGA-EE-A2GB-06 16 20422911 20422911 C T ACSM5 Silent p.I35I 0.40 TCGA-EE-A2GB-06 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.24 tolerated(0.09) benign(0.052) TCGA-EE-A2GB-06 16 22262007 22262007 C T EEF2K Silent p.F147F 0.40 TCGA-EE-A2GB-06 16 2290030 2290030 G A ECI1 Nonsense_Mutation p.Q287* 0.32 TCGA-EE-A2GB-06 16 24226094 24226094 C T PRKCB Missense_Mutation p.S660F 0.39 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GB-06 16 26147295 26147295 G A HS3ST4 Missense_Mutation p.G366E 0.49 tolerated(0.07) possibly_damaging(0.905) TCGA-EE-A2GB-06 16 27481622 27481622 G A GTF3C1 Missense_Mutation p.R1541C 0.38 tolerated(0.11) benign(0.443) TCGA-EE-A2GB-06 16 28592443 28592443 A T CCDC101 Missense_Mutation p.H18L 0.44 deleterious(0.05) benign(0.084) TCGA-EE-A2GB-06 16 28592445 28592445 C T CCDC101 Nonsense_Mutation p.Q19* 0.42 TCGA-EE-A2GB-06 16 29906672 29906672 C G SEZ6L2 Missense_Mutation p.G254A 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GB-06 16 30410313 30410313 G A ZNF48 Missense_Mutation p.G581D 0.40 tolerated(0.1) possibly_damaging(0.473) TCGA-EE-A2GB-06 16 30535882 30535882 C T ZNF768 Missense_Mutation p.D527N 0.31 tolerated_low_confidence(0.39) probably_damaging(0.915) TCGA-EE-A2GB-06 16 32893853 32893853 C T RP11-989E6.3 5'Flank 0.19 TCGA-EE-A2GB-06 16 34739689 34739689 G A RP11-80F22.15 RNA 0.63 TCGA-EE-A2GB-06 16 46744653 46744653 C T MYLK3 Missense_Mutation p.M721I 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GB-06 16 51171209 51171209 A G SALL1 Silent p.I1263I 0.48 TCGA-EE-A2GB-06 16 597653 597653 G A CAPN15 Missense_Mutation p.R272K 0.50 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GB-06 16 597654 597654 G A CAPN15 Silent p.R272R 0.44 TCGA-EE-A2GB-06 16 69148696 69148696 G A HAS3 Missense_Mutation p.V397I 0.18 tolerated(0.24) benign(0.045) TCGA-EE-A2GB-06 16 71015453 71015453 G A HYDIN Nonsense_Mutation p.Q1451* 0.49 TCGA-EE-A2GB-06 16 71025993 71025993 C T HYDIN Missense_Mutation p.M1255I 0.11 benign(0.002) TCGA-EE-A2GB-06 16 731894 731894 C T JMJD8 3'UTR 0.48 TCGA-EE-A2GB-06 16 76389293 76389293 C T CNTNAP4 Missense_Mutation p.T67I 0.21 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GB-06 16 81730266 81730266 C T CMIP Silent p.A544A 0.64 TCGA-EE-A2GB-06 16 84806182 84806182 C T USP10 Silent p.L678L 0.53 TCGA-EE-A2GB-06 16 87730310 87730310 G A JPH3 3'UTR 0.31 TCGA-EE-A2GB-06 16 88689692 88689692 C T ZC3H18 Missense_Mutation p.S578F 0.74 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GB-06 16 8889773 8889773 G A TMEM186 3'UTR 0.43 TCGA-EE-A2GB-06 16 89703949 89703949 C T DPEP1 Missense_Mutation p.S281F 0.27 deleterious(0.03) benign(0.077) TCGA-EE-A2GB-06 16 89954071 89954071 C T TCF25 Missense_Mutation p.P187L 0.27 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2GB-06 16 9934623 9934623 G A GRIN2A Missense_Mutation p.S511L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 17 11687643 11687643 C T DNAH9 Silent p.S2616S 0.44 TCGA-EE-A2GB-06 17 12847412 12847412 G C ARHGAP44 Missense_Mutation p.G254R 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 17 15234783 15234783 G A TEKT3 Silent p.S40S 0.32 TCGA-EE-A2GB-06 17 16330068 16330068 G T TRPV2 Silent p.L376L 0.46 TCGA-EE-A2GB-06 17 1684554 1684554 C T SMYD4 3'UTR 0.54 TCGA-EE-A2GB-06 17 18060493 18060493 C T MYO15A Missense_Mutation p.R2913C 0.50 unknown(0) TCGA-EE-A2GB-06 17 1840680 1840680 C T RTN4RL1 Missense_Mutation p.G146S 0.43 tolerated(0.39) benign(0.006) TCGA-EE-A2GB-06 17 18647600 18647600 C T FBXW10 Missense_Mutation p.R15C 0.36 deleterious(0.05) benign(0) TCGA-EE-A2GB-06 17 18923669 18923669 C T SLC5A10 Silent p.F588F 0.57 TCGA-EE-A2GB-06 17 19284080 19284080 C T MAPK7 Silent p.S186S 0.43 TCGA-EE-A2GB-06 17 2585041 2585041 C T PAFAH1B1 Missense_Mutation p.P393L 0.15 deleterious(0.02) possibly_damaging(0.45) TCGA-EE-A2GB-06 17 2585129 2585129 C T PAFAH1B1 3'UTR 0.64 TCGA-EE-A2GB-06 17 26824333 26824333 C T SLC13A2 3'UTR 0.67 TCGA-EE-A2GB-06 17 27003316 27003316 C T SUPT6H Silent p.P255P 0.19 TCGA-EE-A2GB-06 17 33690205 33690205 G A SLFN11 Missense_Mutation p.P208S 0.32 tolerated(0.38) benign(0.047) TCGA-EE-A2GB-06 17 33904921 33904921 C T PEX12 Silent p.V40V 0.55 TCGA-EE-A2GB-06 17 34866603 34866603 G A MYO19 Missense_Mutation p.A380V 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 17 38024549 38024549 G A ZPBP2 5'UTR 0.25 TCGA-EE-A2GB-06 17 39316469 39316469 G A KRTAP4-4 Missense_Mutation p.H159Y 0.65 unknown(0) TCGA-EE-A2GB-06 17 39620632 39620632 G A KRT32 Missense_Mutation p.P258S 0.47 tolerated(0.76) probably_damaging(0.999) TCGA-EE-A2GB-06 17 40933287 40933287 G A WNK4 Missense_Mutation p.G191R 0.19 deleterious(0) unknown(0) TCGA-EE-A2GB-06 17 46862366 46862366 C T TTLL6 Silent p.S653S 0.26 TCGA-EE-A2GB-06 17 47284745 47284745 C T GNGT2 Missense_Mutation p.E14K 0.18 deleterious(0.01) possibly_damaging(0.474) TCGA-EE-A2GB-06 17 4859299 4859299 G A ENO3 Missense_Mutation p.G310R 0.59 tolerated_low_confidence(0.1) benign(0.12) TCGA-EE-A2GB-06 17 4885044 4885044 G A CAMTA2 Missense_Mutation p.S188F 0.23 deleterious(0) possibly_damaging(0.594) TCGA-EE-A2GB-06 17 56247483 56247483 C T OR4D2 Missense_Mutation p.S156F 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2GB-06 17 56387343 56387343 C T BZRAP1 Silent p.R1292R 0.41 TCGA-EE-A2GB-06 17 56393446 56393446 G A BZRAP1 Missense_Mutation p.P679L 0.39 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GB-06 17 56393447 56393447 G A BZRAP1 Missense_Mutation p.P679S 0.38 deleterious(0) probably_damaging(0.942) TCGA-EE-A2GB-06 17 57287389 57287389 G A SMG8 5'UTR 0.37 TCGA-EE-A2GB-06 17 59560639 59560639 G A TBX4 Missense_Mutation p.G467E 0.39 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EE-A2GB-06 17 60689781 60689781 G A TLK2 Missense_Mutation p.R703Q 0.47 tolerated(0.05) benign(0.169) TCGA-EE-A2GB-06 17 6350821 6350821 G A FAM64A Silent p.L111L 0.21 TCGA-EE-A2GB-06 17 6441394 6441394 G A PITPNM3 Missense_Mutation p.P11S 0.55 tolerated(1) unknown(0) TCGA-EE-A2GB-06 17 65020989 65020989 C T CACNG4 Silent p.A106A 0.45 TCGA-EE-A2GB-06 17 66447029 66447029 G A WIPI1 Missense_Mutation p.P58L 0.30 tolerated(0.11) benign(0.091) TCGA-EE-A2GB-06 17 66890438 66890438 G A ABCA8 Missense_Mutation p.S931L 0.29 deleterious(0.01) benign(0.44) TCGA-EE-A2GB-06 17 67094154 67094154 G A ABCA6 Silent p.L1009L 0.30 TCGA-EE-A2GB-06 17 6982116 6982116 C T CLEC10A Missense_Mutation p.E6K 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GB-06 17 73827385 73827385 T A UNC13D Missense_Mutation p.E831V 0.16 deleterious(0.02) benign(0.219) TCGA-EE-A2GB-06 17 7487088 7487088 G A MPDU1 5'UTR 0.49 TCGA-EE-A2GB-06 17 76045235 76045235 C T TNRC6C Missense_Mutation p.P31L 0.39 tolerated(0.08) benign(0.127) TCGA-EE-A2GB-06 17 79539070 79539070 G A NPLOC4 Silent p.P442P 0.23 TCGA-EE-A2GB-06 17 79650865 79650865 C T ARL16 5'UTR 0.55 TCGA-EE-A2GB-06 17 80529660 80529660 C T FOXK2 Missense_Mutation p.P275S 0.42 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A2GB-06 18 13826521 13826521 C T MC5R Missense_Mutation p.P253S 0.19 deleterious(0) possibly_damaging(0.752) TCGA-EE-A2GB-06 18 14542924 14542924 C T POTEC Silent p.G74G 0.06 TCGA-EE-A2GB-06 18 21330936 21330936 C T LAMA3 Missense_Mutation p.H247Y 0.53 benign(0.148) TCGA-EE-A2GB-06 18 22807313 22807313 T A ZNF521 Missense_Mutation p.K190M 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 18 28970666 28970666 C T DSG4 Missense_Mutation p.H189Y 0.18 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2GB-06 18 30091984 30091984 G A WBP11P1 RNA 0.45 TCGA-EE-A2GB-06 18 40850250 40850250 A T SYT4 3'UTR 0.44 TCGA-EE-A2GB-06 18 40853626 40853626 T C SYT4 Silent p.E256E 0.40 TCGA-EE-A2GB-06 18 40853629 40853629 C T SYT4 Silent p.G255G 0.42 TCGA-EE-A2GB-06 18 43591154 43591154 C T PSTPIP2 Missense_Mutation p.R116Q 0.41 deleterious(0.03) benign(0.037) TCGA-EE-A2GB-06 18 44561658 44561658 C T TCEB3B 5'UTR 0.61 TCGA-EE-A2GB-06 18 47480796 47480796 C T MYO5B Missense_Mutation p.G519R 0.44 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GB-06 18 51729274 51729274 G A MBD2 Intron 0.38 TCGA-EE-A2GB-06 18 55143924 55143924 C T ONECUT2 Missense_Mutation p.S495L 0.15 deleterious_low_confidence(0.01) benign(0.198) TCGA-EE-A2GB-06 18 61326686 61326686 C T SERPINB3 Missense_Mutation p.E100K 0.41 tolerated(0.08) benign(0.412) TCGA-EE-A2GB-06 18 67562948 67562948 G A CD226 Missense_Mutation p.T239I 0.39 tolerated(0.16) benign(0.429) TCGA-EE-A2GB-06 18 683327 683327 G A ENOSF1 Silent p.S286S 0.31 TCGA-EE-A2GB-06 19 11942602 11942602 T A ZNF440 Missense_Mutation p.F204Y 0.34 tolerated(1) probably_damaging(0.955) TCGA-EE-A2GB-06 19 12807446 12807446 G A FBXW9 5'UTR 0.55 TCGA-EE-A2GB-06 19 14274081 14274081 G A LPHN1 Missense_Mutation p.R183C 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GB-06 19 14589320 14589320 G A GIPC1 Silent p.L304L 0.53 TCGA-EE-A2GB-06 19 16632418 16632418 G A CHERP Silent p.L676L 0.44 TCGA-EE-A2GB-06 19 16799182 16799182 G C TMEM38A Nonstop_Mutation p.*300Yext*17 0.33 TCGA-EE-A2GB-06 19 17305746 17305746 G A MYO9B Silent p.K1170K 0.32 TCGA-EE-A2GB-06 19 17305747 17305747 G T MYO9B Nonsense_Mutation p.E1171* 0.32 TCGA-EE-A2GB-06 19 1818750 1818750 C T REXO1 Missense_Mutation p.G953R 0.21 deleterious(0) probably_damaging(0.929) TCGA-EE-A2GB-06 19 3155863 3155863 G A GNA15 Nonsense_Mutation p.W219* 0.42 TCGA-EE-A2GB-06 19 36001153 36001153 C T DMKN Missense_Mutation p.G307E 0.33 tolerated_low_confidence(0.21) unknown(0) TCGA-EE-A2GB-06 19 36236335 36236335 C T PSENEN 5'UTR 0.33 TCGA-EE-A2GB-06 19 3743959 3743959 G A TJP3 Silent p.V631V 0.47 TCGA-EE-A2GB-06 19 37618929 37618929 C T ZNF420 Missense_Mutation p.R346W 0.54 tolerated(0.23) possibly_damaging(0.759) TCGA-EE-A2GB-06 19 38028549 38028549 G A ZNF793 Missense_Mutation p.R330Q 0.36 tolerated(0.5) benign(0.02) TCGA-EE-A2GB-06 19 38959954 38959954 C T RYR1 Missense_Mutation p.P1189L 0.22 probably_damaging(0.998) TCGA-EE-A2GB-06 19 38996454 38996454 G A RYR1 Silent p.E2803E 0.20 TCGA-EE-A2GB-06 19 39589776 39589776 C T PAPL Missense_Mutation p.H167Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GB-06 19 40424418 40424418 C T FCGBP Silent p.L595L 0.25 TCGA-EE-A2GB-06 19 41601898 41601898 G A CYP2A13 3'UTR 0.45 TCGA-EE-A2GB-06 19 42225069 42225069 T C CEACAM5 Missense_Mutation p.S667P 0.24 deleterious(0.02) possibly_damaging(0.671) TCGA-EE-A2GB-06 19 42373237 42373237 C T RPS19 Silent p.V103V 0.21 TCGA-EE-A2GB-06 19 42636569 42636569 C T POU2F2 5'UTR 0.23 TCGA-EE-A2GB-06 19 430738 430738 G A SHC2 Missense_Mutation p.P374S 0.57 tolerated(0.38) benign(0.015) TCGA-EE-A2GB-06 19 43358257 43358257 C T PSG10P RNA 0.21 TCGA-EE-A2GB-06 19 43373139 43373139 C T PSG1 Missense_Mutation p.E253K 0.48 tolerated(0.2) probably_damaging(0.96) TCGA-EE-A2GB-06 19 43382078 43382078 G A PSG1 Silent p.T139T 0.57 TCGA-EE-A2GB-06 19 43762266 43762266 G A PSG9 Intron 0.49 TCGA-EE-A2GB-06 19 46838214 46838214 C T HIF3A Missense_Mutation p.T628I 0.44 tolerated_low_confidence(0.1) benign(0.007) TCGA-EE-A2GB-06 19 46887034 46887034 C T PPP5C Intron 0.55 TCGA-EE-A2GB-06 19 47569895 47569895 G A ZC3H4 Silent p.T1210T 0.71 TCGA-EE-A2GB-06 19 47569896 47569896 G A ZC3H4 Missense_Mutation p.T1210I 0.71 unknown(0) TCGA-EE-A2GB-06 19 4911012 4911012 G A UHRF1 RNA 0.24 TCGA-EE-A2GB-06 19 49259616 49259616 G A FGF21 Silent p.G41G 0.31 TCGA-EE-A2GB-06 19 50333362 50333362 C T MED25 Missense_Mutation p.P236S 0.19 tolerated(0.19) benign(0.001) TCGA-EE-A2GB-06 19 52222589 52222589 G A HAS1 Missense_Mutation p.P191L 0.24 tolerated(0.14) benign(0.035) TCGA-EE-A2GB-06 19 52327427 52327427 C A FPR3 Silent p.A142A 0.22 TCGA-EE-A2GB-06 19 53572807 53572807 T A ZNF160 Missense_Mutation p.Y327F 0.23 tolerated(0.2) benign(0.105) TCGA-EE-A2GB-06 19 53741769 53741769 C T ZNF677 Missense_Mutation p.E71K 0.19 tolerated(0.36) probably_damaging(0.968) TCGA-EE-A2GB-06 19 53747073 53747073 G A ZNF677 Silent p.A31A 0.62 TCGA-EE-A2GB-06 19 53793072 53793072 C T BIRC8 Missense_Mutation p.E186K 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GB-06 19 54782844 54782844 C T LILRB2 Missense_Mutation p.G260R 0.23 tolerated(0.05) benign(0.443) TCGA-EE-A2GB-06 19 54818732 54818732 C T LILRA5 Missense_Mutation p.S289N 0.24 tolerated(0.08) benign(0.109) TCGA-EE-A2GB-06 19 55417511 55417511 C T NCR1 5'UTR 0.57 TCGA-EE-A2GB-06 19 56370173 56370173 C T NLRP4 Missense_Mutation p.H472Y 0.33 deleterious(0) possibly_damaging(0.714) TCGA-EE-A2GB-06 19 56424631 56424631 C T NLRP13 Missense_Mutation p.M184I 0.21 tolerated(0.64) benign(0.095) TCGA-EE-A2GB-06 19 56704196 56704196 C T ZSCAN5B Missense_Mutation p.D76N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 19 58146045 58146045 T C ZNF211 Missense_Mutation p.W60R 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 19 58238788 58238788 G A ZNF671 Missense_Mutation p.P37S 0.29 tolerated(0.15) benign(0.001) TCGA-EE-A2GB-06 19 6501335 6501335 G A TUBB4A Silent p.P80P 0.31 TCGA-EE-A2GB-06 19 6697719 6697719 C T C3 Missense_Mutation p.E843K 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 19 8174214 8174214 G A FBN3 Silent p.S1505S 0.53 TCGA-EE-A2GB-06 19 8576722 8576722 G A ZNF414 Missense_Mutation p.P218L 0.57 deleterious(0.04) possibly_damaging(0.732) TCGA-EE-A2GB-06 19 8656921 8656921 G A ADAMTS10 Missense_Mutation p.P552S 0.74 tolerated(0.4) benign(0.006) TCGA-EE-A2GB-06 19 8670181 8670181 C T ADAMTS10 Missense_Mutation p.G51R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 19 9007535 9007535 C G MUC16 Missense_Mutation p.V13145L 0.22 possibly_damaging(0.651) TCGA-EE-A2GB-06 19 9061785 9061785 G A MUC16 Missense_Mutation p.S8554F 0.30 unknown(0) TCGA-EE-A2GB-06 19 9076829 9076829 G A MUC16 Silent p.S3539S 0.30 TCGA-EE-A2GB-06 19 9085565 9085565 T C MUC16 Missense_Mutation p.S2084G 0.26 unknown(0) TCGA-EE-A2GB-06 19 9086535 9086535 C T MUC16 Silent p.V1760V 0.20 TCGA-EE-A2GB-06 19 9577647 9577647 T A ZNF560 Missense_Mutation p.N659I 0.55 deleterious(0) benign(0.337) TCGA-EE-A2GB-06 1 104093653 104093653 G A RNPC3 Silent p.K484K 0.22 TCGA-EE-A2GB-06 1 112042444 112042444 G A ADORA3 Intron 0.19 TCGA-EE-A2GB-06 1 112308368 112308368 C T DDX20 Missense_Mutation p.P441L 0.30 deleterious(0.02) benign(0.059) TCGA-EE-A2GB-06 1 114165440 114165440 C T MAGI3 Missense_Mutation p.S395L 0.29 tolerated(0.06) benign(0.044) TCGA-EE-A2GB-06 1 114424487 114424487 G A BCL2L15 Missense_Mutation p.P128S 0.46 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A2GB-06 1 115537360 115537360 G A SYCP1 Silent p.R915R 0.53 TCGA-EE-A2GB-06 1 118570995 118570995 G A SPAG17 Missense_Mutation p.P1211L 0.35 tolerated(0.37) benign(0.006) TCGA-EE-A2GB-06 1 12887274 12887274 G A PRAMEF11 Nonsense_Mutation p.Q195* 0.40 TCGA-EE-A2GB-06 1 13036627 13036627 G A PRAMEF22 Missense_Mutation p.M233I 0.23 deleterious(0.01) benign(0.05) TCGA-EE-A2GB-06 1 144863441 144863441 G A PDE4DIP Silent p.L1988L 0.20 TCGA-EE-A2GB-06 1 152085190 152085190 C G TCHH Missense_Mutation p.R168P 0.16 unknown(0) TCGA-EE-A2GB-06 1 152188193 152188193 G A HRNR Missense_Mutation p.S1971L 0.03 unknown(0) TCGA-EE-A2GB-06 1 152190845 152190845 G A HRNR Missense_Mutation p.S1087L 0.38 unknown(0) TCGA-EE-A2GB-06 1 152275690 152275690 G A FLG Missense_Mutation p.S3891F 0.34 unknown(0) TCGA-EE-A2GB-06 1 152275800 152275800 C T FLG Silent p.R3854R 0.28 TCGA-EE-A2GB-06 1 152324245 152324245 C T FLG2 Missense_Mutation p.R2006K 0.36 benign(0.158) TCGA-EE-A2GB-06 1 154932091 154932091 G A PYGO2 Missense_Mutation p.L129F 0.57 tolerated(0.11) benign(0.032) TCGA-EE-A2GB-06 1 155172680 155172680 C T THBS3 Missense_Mutation p.E294K 0.37 tolerated(0.12) benign(0.107) TCGA-EE-A2GB-06 1 156376699 156376699 C T C1orf61 Intron 0.51 TCGA-EE-A2GB-06 1 156641393 156641393 G A NES Silent p.L863L 0.14 TCGA-EE-A2GB-06 1 156641395 156641395 G A NES Missense_Mutation p.P862L 0.51 deleterious(0.03) benign(0.424) TCGA-EE-A2GB-06 1 157771858 157771858 C T FCRL1 Missense_Mutation p.E245K 0.44 tolerated(0.18) possibly_damaging(0.844) TCGA-EE-A2GB-06 1 15817855 15817855 G A CELA2B 3'UTR 0.49 TCGA-EE-A2GB-06 1 158725527 158725527 C T OR6K6 Missense_Mutation p.L308F 0.53 tolerated(0.12) benign(0.097) TCGA-EE-A2GB-06 1 158736272 158736272 G A OR6N1 Silent p.S67S 0.24 TCGA-EE-A2GB-06 1 159779367 159779367 C T FCRL6 Silent p.S260S 0.26 TCGA-EE-A2GB-06 1 159900975 159900975 G A IGSF9 Silent p.G530G 0.64 TCGA-EE-A2GB-06 1 160783515 160783515 G A LY9 Missense_Mutation p.G182R 0.27 tolerated(0.68) possibly_damaging(0.524) TCGA-EE-A2GB-06 1 161018580 161018580 T C ARHGAP30 Missense_Mutation p.D744G 0.20 tolerated_low_confidence(0.14) benign(0.004) TCGA-EE-A2GB-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.63 deleterious(0.02) benign(0.036) TCGA-EE-A2GB-06 1 171509388 171509388 C T PRRC2C Missense_Mutation p.S926F 0.09 unknown(0) TCGA-EE-A2GB-06 1 171605430 171605430 C T MYOC Missense_Mutation p.D384N 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 1 17318891 17318891 G A ATP13A2 Missense_Mutation p.P618S 0.46 tolerated(0.32) benign(0.014) TCGA-EE-A2GB-06 1 173486750 173486750 C T SLC9C2 Missense_Mutation p.D945N 0.17 deleterious(0.03) probably_damaging(0.957) TCGA-EE-A2GB-06 1 175375715 175375715 C T TNR Missense_Mutation p.E46K 0.62 deleterious_low_confidence(0.03) benign(0.002) TCGA-EE-A2GB-06 1 175375835 175375835 C T TNR Missense_Mutation p.E6K 0.62 deleterious_low_confidence(0.04) benign(0.069) TCGA-EE-A2GB-06 1 17599850 17599850 G A PADI3 Missense_Mutation p.G355S 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GB-06 1 176675538 176675538 G A PAPPA2 Missense_Mutation p.D1137N 0.68 tolerated(0.06) benign(0.139) TCGA-EE-A2GB-06 1 177250674 177250674 C T BRINP2 3'UTR 0.64 TCGA-EE-A2GB-06 1 180849301 180849302 CC T XPR1 Frame_Shift_Del p.P633Lfs*2 0.39 TCGA-EE-A2GB-06 1 18703426 18703426 C T IGSF21 Missense_Mutation p.R412C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 1 18808428 18808428 C T KLHDC7A Missense_Mutation p.S318F 0.41 tolerated(0.07) benign(0.405) TCGA-EE-A2GB-06 1 18809785 18809785 C T KLHDC7A Silent p.P770P 0.18 TCGA-EE-A2GB-06 1 196871568 196871568 C T CFHR4 Missense_Mutation p.P26S 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 1 197024856 197024856 G A F13B Missense_Mutation p.P448L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 1 198678823 198678823 G A PTPRC Missense_Mutation p.M347I 0.41 tolerated(0.48) benign(0) TCGA-EE-A2GB-06 1 201028335 201028335 G A CACNA1S Silent p.L1169L 0.74 TCGA-EE-A2GB-06 1 204129781 204129781 C G REN Silent p.S133S 0.25 TCGA-EE-A2GB-06 1 204393874 204393874 C T PIK3C2B 3'UTR 0.62 TCGA-EE-A2GB-06 1 20517764 20517764 G A UBXN10 Missense_Mutation p.R237Q 0.48 tolerated(0.88) benign(0.002) TCGA-EE-A2GB-06 1 205492667 205492667 C T CDK18 Missense_Mutation p.P63S 0.77 tolerated_low_confidence(0.25) benign(0.139) TCGA-EE-A2GB-06 1 205813990 205813990 C T PM20D1 Silent p.R175R 0.55 TCGA-EE-A2GB-06 1 207307809 207307809 G A C4BPA Missense_Mutation p.R382H 0.23 tolerated(0.56) benign(0.001) TCGA-EE-A2GB-06 1 209961745 209961745 G A IRF6 3'UTR 0.29 TCGA-EE-A2GB-06 1 211956832 211956832 G A LPGAT1 Missense_Mutation p.R156C 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 1 214567112 214567112 G A PTPN14 Silent p.I285I 0.55 TCGA-EE-A2GB-06 1 220091757 220091757 G A SLC30A10 Silent p.P266P 0.26 TCGA-EE-A2GB-06 1 23239072 23239072 C T EPHB2 Silent p.V945V 0.37 TCGA-EE-A2GB-06 1 233122064 233122064 C T PCNXL2 Missense_Mutation p.G2005D 0.33 deleterious(0.03) possibly_damaging(0.873) TCGA-EE-A2GB-06 1 233152691 233152691 T C PCNXL2 Silent p.Q1605Q 0.43 TCGA-EE-A2GB-06 1 233490664 233490664 G A MLK4 Missense_Mutation p.M406I 0.52 deleterious(0.04) benign(0.071) TCGA-EE-A2GB-06 1 233511738 233511738 G A MLK4 Silent p.R584R 0.49 TCGA-EE-A2GB-06 1 23417786 23417786 G A LUZP1 Missense_Mutation p.S990F 0.35 tolerated(0.05) benign(0.128) TCGA-EE-A2GB-06 1 23724446 23724446 G A TCEA3 Missense_Mutation p.S149L 0.39 deleterious(0.02) possibly_damaging(0.811) TCGA-EE-A2GB-06 1 241964568 241964568 G A WDR64 3'UTR 0.32 TCGA-EE-A2GB-06 1 247587626 247587626 C T NLRP3 Missense_Mutation p.P294L 0.36 deleterious(0) possibly_damaging(0.809) TCGA-EE-A2GB-06 1 247921397 247921397 G A OR1C1 Silent p.F104F 0.62 TCGA-EE-A2GB-06 1 248059058 248059058 C T OR2W3 Missense_Mutation p.T57I 0.34 deleterious(0.02) benign(0.191) TCGA-EE-A2GB-06 1 248201573 248201573 G A OR2L2 Missense_Mutation p.E2K 0.53 tolerated(0.06) benign(0.213) TCGA-EE-A2GB-06 1 248263295 248263295 C T OR2L13 Silent p.L206L 0.32 TCGA-EE-A2GB-06 1 248343915 248343915 C T OR2M2 Missense_Mutation p.P210S 0.36 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GB-06 1 248487408 248487408 C T OR2M7 Missense_Mutation p.D155N 0.41 tolerated(0.17) benign(0.434) TCGA-EE-A2GB-06 1 248512703 248512703 C T OR14C36 Silent p.F209F 0.31 TCGA-EE-A2GB-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.14 TCGA-EE-A2GB-06 1 248616302 248616302 C T OR2T2 Silent p.S68S 0.26 TCGA-EE-A2GB-06 1 24989168 24989168 T C SRRM1 Missense_Mutation p.S501P 0.38 unknown(0) TCGA-EE-A2GB-06 1 26506937 26506937 C T CNKSR1 Intron 0.36 TCGA-EE-A2GB-06 1 26669298 26669298 G A AIM1L Missense_Mutation p.P177S 0.39 tolerated(0.2) benign(0.016) TCGA-EE-A2GB-06 1 26669299 26669299 G A AIM1L Silent p.T176T 0.40 TCGA-EE-A2GB-06 1 32155398 32155398 C T COL16A1 Missense_Mutation p.G522R 0.17 unknown(0) TCGA-EE-A2GB-06 1 3347512 3347512 G A PRDM16 Missense_Mutation p.E1121K 0.38 deleterious(0.02) possibly_damaging(0.52) TCGA-EE-A2GB-06 1 35250783 35250783 C T GJB3 Silent p.I140I 0.44 TCGA-EE-A2GB-06 1 35824978 35824978 G A ZMYM4 Missense_Mutation p.E180K 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.787) TCGA-EE-A2GB-06 1 36859377 36859377 G C LSM10 Silent p.P118P 0.28 TCGA-EE-A2GB-06 1 40315913 40315913 T C TRIT1 Missense_Mutation p.E194G 0.27 deleterious(0.04) probably_damaging(0.958) TCGA-EE-A2GB-06 1 42050500 42050500 G A HIVEP3 5'UTR 0.16 TCGA-EE-A2GB-06 1 42880258 42880258 C T RIMKLA Silent p.I263I 0.43 TCGA-EE-A2GB-06 1 43647397 43647397 C T WDR65 Missense_Mutation p.P117L 0.30 deleterious(0) probably_damaging(0.947) TCGA-EE-A2GB-06 1 47027158 47027158 C T MKNK1 Missense_Mutation p.V374M 0.34 deleterious(0.01) benign(0.219) TCGA-EE-A2GB-06 1 4832577 4832599 TGGAAACCGGTAAGCTCGGGCTC - AJAP1 Splice_Site p.X386_splice 0.19 TCGA-EE-A2GB-06 1 55063070 55063070 T G ACOT11 Missense_Mutation p.V249G 0.44 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GB-06 1 60091681 60091681 C T FGGY Missense_Mutation p.H345Y 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 1 66067139 66067139 C T LEPR Silent p.I353I 0.61 TCGA-EE-A2GB-06 1 68910336 68910336 C T RPE65 Missense_Mutation p.G125R 0.48 tolerated(0.39) probably_damaging(0.921) TCGA-EE-A2GB-06 1 79392644 79392644 G A ELTD1 Missense_Mutation p.S337L 0.25 deleterious(0.02) possibly_damaging(0.685) TCGA-EE-A2GB-06 1 82408712 82408712 G A LPHN2 Missense_Mutation p.E153K 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GB-06 1 85331271 85331271 G A LPAR3 Missense_Mutation p.S178F 0.58 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A2GB-06 1 86591026 86591026 C T COL24A1 Silent p.G331G 0.19 TCGA-EE-A2GB-06 1 94337681 94337681 G A DNTTIP2 Missense_Mutation p.P672S 0.20 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GB-06 1 94474331 94474331 G A ABCA4 Silent p.I1937I 0.23 TCGA-EE-A2GB-06 1 98187204 98187204 C T DPYD Missense_Mutation p.M115I 0.21 tolerated(0.23) benign(0.004) TCGA-EE-A2GB-06 20 10030446 10030446 C T ANKEF1 Missense_Mutation p.S410L 0.37 deleterious(0) possibly_damaging(0.559) TCGA-EE-A2GB-06 20 20024146 20024146 T C CRNKL1 Missense_Mutation p.E482G 0.43 deleterious(0.01) benign(0.248) TCGA-EE-A2GB-06 20 29891167 29891167 C T DEFB116 Missense_Mutation p.E53K 0.23 tolerated(1) benign(0.001) TCGA-EE-A2GB-06 20 30804475 30804475 T A POFUT1 Missense_Mutation p.F165I 0.45 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2GB-06 20 3277506 3277506 A T C20orf194 Splice_Site p.X673_splice 0.20 TCGA-EE-A2GB-06 20 33334674 33334674 C T NCOA6 Missense_Mutation p.E951K 0.41 possibly_damaging(0.872) TCGA-EE-A2GB-06 20 33581950 33581950 G A MYH7B Missense_Mutation p.D858N 0.48 possibly_damaging(0.853) TCGA-EE-A2GB-06 20 35060252 35060252 C T DLGAP4 Silent p.A44A 0.38 TCGA-EE-A2GB-06 20 35575208 35575208 C T SAMHD1 Splice_Site p.X70_splice 0.43 TCGA-EE-A2GB-06 20 37580266 37580266 C T FAM83D Silent p.F317F 0.28 TCGA-EE-A2GB-06 20 40714436 40714436 C T PTPRT Missense_Mutation p.E1302K 0.43 deleterious(0) benign(0.13) TCGA-EE-A2GB-06 20 41306689 41306689 C T PTPRT Missense_Mutation p.E324K 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GB-06 20 42143230 42143230 G A L3MBTL1 Intron 0.67 TCGA-EE-A2GB-06 20 43251473 43251473 G A ADA Silent p.F259F 0.41 TCGA-EE-A2GB-06 20 43836379 43836379 G A SEMG1 Silent p.G147G 0.29 TCGA-EE-A2GB-06 20 44453199 44453199 C G TNNC2 Missense_Mutation p.R45T 0.40 deleterious(0.01) possibly_damaging(0.572) TCGA-EE-A2GB-06 20 47258999 47258999 G A PREX1 Silent p.I1210I 0.37 TCGA-EE-A2GB-06 20 47707330 47707330 C T CSE1L Missense_Mutation p.H745Y 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GB-06 20 47990024 47990024 G A KCNB1 Silent p.Y691Y 0.36 TCGA-EE-A2GB-06 20 5170841 5170841 C T CDS2 Silent p.I433I 0.53 TCGA-EE-A2GB-06 20 5283198 5283198 C T PROKR2 Missense_Mutation p.D215N 0.41 tolerated(0.07) probably_damaging(0.925) TCGA-EE-A2GB-06 20 53208205 53208205 G A DOK5 Missense_Mutation p.E154K 0.41 deleterious(0.01) possibly_damaging(0.645) TCGA-EE-A2GB-06 20 56140810 56140810 G A PCK1 Missense_Mutation p.E607K 0.52 tolerated(0.16) benign(0.043) TCGA-EE-A2GB-06 20 56186787 56186787 G A ZBP1 Silent p.P290P 0.57 TCGA-EE-A2GB-06 20 60921188 60921188 C T LAMA5 Missense_Mutation p.E456K 0.16 possibly_damaging(0.891) TCGA-EE-A2GB-06 20 61303154 61303164 CGGAGTCTTCA - SLCO4A1 Frame_Shift_Del p.S693* 0.21 TCGA-EE-A2GB-06 20 61990991 61990991 G A CHRNA4 Missense_Mutation p.S46F 0.44 deleterious(0.04) possibly_damaging(0.902) TCGA-EE-A2GB-06 20 62724272 62724272 C T OPRL1 Silent p.L67L 0.39 TCGA-EE-A2GB-06 20 9449315 9449315 G A PLCB4 Missense_Mutation p.E1104K 0.44 deleterious(0.01) possibly_damaging(0.763) TCGA-EE-A2GB-06 20 9495485 9495485 C T LAMP5 5'UTR 0.60 TCGA-EE-A2GB-06 21 11039402 11039402 G A BAGE2 RNA 0.09 TCGA-EE-A2GB-06 21 11039421 11039421 C T BAGE2 RNA 0.07 TCGA-EE-A2GB-06 21 11049620 11049620 C T BAGE2 Intron 0.11 TCGA-EE-A2GB-06 21 31869219 31869219 C T KRTAP19-4 Silent p.T70T 0.75 TCGA-EE-A2GB-06 21 43863433 43863433 C T UBASH3A Missense_Mutation p.P548L 0.60 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GB-06 21 48064319 48064319 C T PRMT2 Silent p.N82N 0.73 TCGA-EE-A2GB-06 21 48064320 48064320 C T PRMT2 Missense_Mutation p.H83Y 0.73 tolerated(0.48) possibly_damaging(0.791) TCGA-EE-A2GB-06 22 17072798 17072798 C T CCT8L2 Missense_Mutation p.D215N 0.15 tolerated(0.12) benign(0.219) TCGA-EE-A2GB-06 22 20102127 20102127 G A TRMT2A Silent p.T401T 0.32 TCGA-EE-A2GB-06 22 21073016 21073016 G A PI4KA Silent p.F1737F 0.41 TCGA-EE-A2GB-06 22 22550605 22550605 C T IGLV6-57 Silent p.S94S 0.47 TCGA-EE-A2GB-06 22 22892525 22892525 G A PRAME Silent p.F192F 0.39 TCGA-EE-A2GB-06 22 23917246 23917246 C T IGLL1 Nonsense_Mutation p.W77* 0.13 TCGA-EE-A2GB-06 22 24036575 24036575 C G RGL4 Missense_Mutation p.I318M 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 22 25023364 25023364 C T GGT1 Intron 0.43 TCGA-EE-A2GB-06 22 25623851 25623851 G A CRYBB2 Missense_Mutation p.G69S 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GB-06 22 26219584 26219584 C T MYO18B Silent p.I878I 0.39 TCGA-EE-A2GB-06 22 26422964 26422964 G A MYO18B Missense_Mutation p.E2342K 0.45 tolerated(0.53) benign(0.055) TCGA-EE-A2GB-06 22 26688367 26688367 C T SEZ6L Intron 0.61 TCGA-EE-A2GB-06 22 31532705 31532705 T G PLA2G3 Missense_Mutation p.K427T 0.44 deleterious(0.03) benign(0.393) TCGA-EE-A2GB-06 22 31663806 31663806 C T LIMK2 Silent p.F370F 0.44 TCGA-EE-A2GB-06 22 35729441 35729441 C T TOM1 Silent p.G326G 0.34 TCGA-EE-A2GB-06 22 35729442 35729442 C T TOM1 Missense_Mutation p.P327S 0.33 tolerated(0.11) benign(0.008) TCGA-EE-A2GB-06 22 37581424 37581424 G A C1QTNF6 Silent p.I41I 0.43 TCGA-EE-A2GB-06 22 40045903 40045903 C T CACNA1I Silent p.V655V 0.34 TCGA-EE-A2GB-06 22 40064311 40064311 C T CACNA1I Silent p.L1373L 0.43 TCGA-EE-A2GB-06 22 41677128 41677128 G A RANGAP1 5'UTR 0.48 TCGA-EE-A2GB-06 22 41864692 41864692 G A PHF5A 5'UTR 0.52 TCGA-EE-A2GB-06 22 42952487 42952487 C T SERHL2 Intron 0.29 TCGA-EE-A2GB-06 22 49103614 49103614 C T FAM19A5 Silent p.G116G 0.49 TCGA-EE-A2GB-06 2 102959875 102959875 A C IL1RL1 Missense_Mutation p.I324L 0.54 tolerated(0.24) benign(0.004) TCGA-EE-A2GB-06 2 10580980 10580980 T C ODC1 Missense_Mutation p.Q419R 0.33 tolerated(0.37) benign(0.004) TCGA-EE-A2GB-06 2 105883952 105883952 G A TGFBRAP1 Missense_Mutation p.P824L 0.31 deleterious(0) possibly_damaging(0.491) TCGA-EE-A2GB-06 2 106497949 106497949 C T NCK2 Missense_Mutation p.S131F 0.26 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2GB-06 2 107041611 107041611 C T RGPD3 Missense_Mutation p.E938K 0.25 tolerated(0.14) benign(0.011) TCGA-EE-A2GB-06 2 108487252 108487252 G A RGPD4 Missense_Mutation p.G931E 0.32 tolerated(0.2) benign(0.003) TCGA-EE-A2GB-06 2 108626859 108626859 G A SLC5A7 Missense_Mutation p.G429R 0.21 tolerated(0.49) benign(0.066) TCGA-EE-A2GB-06 2 112592251 112592251 C T ANAPC1 Missense_Mutation p.E772K 0.26 deleterious(0) possibly_damaging(0.605) TCGA-EE-A2GB-06 2 112702606 112702606 C T MERTK Silent p.I184I 0.28 TCGA-EE-A2GB-06 2 112779006 112779006 G T MERTK Missense_Mutation p.D733Y 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 2 113346467 113346467 G A CHCHD5 3'UTR 0.61 TCGA-EE-A2GB-06 2 113514357 113514357 C T CKAP2L Silent p.R197R 0.44 TCGA-EE-A2GB-06 2 113832373 113832373 G A IL1F10 Silent p.G64G 0.23 TCGA-EE-A2GB-06 2 119739049 119739049 G A MARCO Silent p.G277G 0.17 TCGA-EE-A2GB-06 2 1243529 1243529 G A SNTG2 Missense_Mutation p.C290Y 0.31 tolerated(1) benign(0.006) TCGA-EE-A2GB-06 2 131520963 131520963 G A AMER3 Missense_Mutation p.D440N 0.50 deleterious(0.02) possibly_damaging(0.811) TCGA-EE-A2GB-06 2 133540838 133540838 G A NCKAP5 Silent p.S1182S 0.38 TCGA-EE-A2GB-06 2 136564929 136564929 G A LCT Silent p.V1314V 0.49 TCGA-EE-A2GB-06 2 137814229 137814229 C T THSD7B Missense_Mutation p.R127W 0.38 deleterious(0.02) probably_damaging(0.942) TCGA-EE-A2GB-06 2 137928475 137928475 C T THSD7B Missense_Mutation p.R564C 0.30 deleterious(0) possibly_damaging(0.835) TCGA-EE-A2GB-06 2 141607701 141607701 C T LRP1B Missense_Mutation p.G1637R 0.24 probably_damaging(0.989) TCGA-EE-A2GB-06 2 141777598 141777598 C T LRP1B Silent p.R621R 0.30 TCGA-EE-A2GB-06 2 145157783 145157783 G A ZEB2 Missense_Mutation p.S324F 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GB-06 2 149221446 149221446 C T MBD5 Missense_Mutation p.P119S 0.48 tolerated(0.17) possibly_damaging(0.803) TCGA-EE-A2GB-06 2 152484039 152484039 C T NEB Missense_Mutation p.D3381N 0.25 probably_damaging(1) TCGA-EE-A2GB-06 2 152529052 152529052 G A NEB Missense_Mutation p.T1377I 0.30 probably_damaging(0.951) TCGA-EE-A2GB-06 2 152534256 152534256 C T NEB Nonsense_Mutation p.W1199* 0.28 TCGA-EE-A2GB-06 2 158406693 158406693 G A ACVR1C Silent p.F252F 0.36 TCGA-EE-A2GB-06 2 160688295 160688295 G A LY75-CD302 Missense_Mutation p.P1282S 0.25 tolerated(0.33) probably_damaging(0.986) TCGA-EE-A2GB-06 2 160901663 160901663 C A PLA2R1 Nonsense_Mutation p.G39* 0.24 TCGA-EE-A2GB-06 2 163002103 163002103 G A GCG Silent p.G113G 0.62 TCGA-EE-A2GB-06 2 171716242 171716242 G A GAD1 Silent p.L545L 0.54 TCGA-EE-A2GB-06 2 179437594 179437594 C T TTN Missense_Mutation p.R24422K 0.49 TCGA-EE-A2GB-06 2 179569645 179569645 C T TTN Missense_Mutation p.E9885K 0.45 TCGA-EE-A2GB-06 2 179611959 179611959 C T TTN Intron 0.35 TCGA-EE-A2GB-06 2 179615421 179615421 C T TTN Intron 0.50 TCGA-EE-A2GB-06 2 179647604 179647604 C T TTN Missense_Mutation p.S1010N 0.51 TCGA-EE-A2GB-06 2 179720119 179720119 C T CCDC141 Silent p.K1005K 0.41 TCGA-EE-A2GB-06 2 18113407 18113407 C T KCNS3 Missense_Mutation p.P378S 0.51 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GB-06 2 182388248 182388248 C T ITGA4 Missense_Mutation p.H720Y 0.23 tolerated(0.1) benign(0.026) TCGA-EE-A2GB-06 2 185463672 185463672 G T ZNF804A 5'UTR 0.46 TCGA-EE-A2GB-06 2 185801739 185801739 G A ZNF804A Missense_Mutation p.G539E 0.25 tolerated(0.42) probably_damaging(0.998) TCGA-EE-A2GB-06 2 190557052 190557052 C T ANKAR Missense_Mutation p.H371Y 0.48 tolerated(0.5) benign(0.002) TCGA-EE-A2GB-06 2 196799425 196799425 C T DNAH7 Missense_Mutation p.E1121K 0.57 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GB-06 2 197183308 197183308 C T HECW2 Missense_Mutation p.G769E 0.51 tolerated_low_confidence(0.44) benign(0.001) TCGA-EE-A2GB-06 2 197189781 197189781 G A HECW2 Missense_Mutation p.P222S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 2 197708730 197708730 G A PGAP1 Missense_Mutation p.R803C 0.36 tolerated(0.07) benign(0.001) TCGA-EE-A2GB-06 2 198950711 198950711 C T PLCL1 Missense_Mutation p.R824W 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GB-06 2 202028672 202028672 G A CFLAR Silent p.K473K 0.25 TCGA-EE-A2GB-06 2 203682140 203682140 C - ICA1L Splice_Site p.X228_splice 0.36 TCGA-EE-A2GB-06 2 209358274 209358274 G A PTH2R Missense_Mutation p.E515K 0.50 tolerated(0.2) benign(0.01) TCGA-EE-A2GB-06 2 21250882 21250882 C T APOB Missense_Mutation p.D629N 0.27 probably_damaging(0.996) TCGA-EE-A2GB-06 2 212652844 212652844 G A ERBB4 Silent p.F154F 0.55 TCGA-EE-A2GB-06 2 216964891 216964891 C T TMEM169 Missense_Mutation p.L174F 0.45 tolerated(0.19) benign(0.178) TCGA-EE-A2GB-06 2 220354408 220354408 G A SPEG Missense_Mutation p.G2890R 0.28 benign(0.307) TCGA-EE-A2GB-06 2 222347196 222347196 G A EPHA4 Silent p.V398V 0.50 TCGA-EE-A2GB-06 2 233201319 233201319 C T DIS3L2 Silent p.P879P 0.55 TCGA-EE-A2GB-06 2 233201320 233201320 G T DIS3L2 Nonsense_Mutation p.E880* 0.55 TCGA-EE-A2GB-06 2 234106901 234106901 C T INPP5D Missense_Mutation p.P940S 0.61 tolerated(1) benign(0.002) TCGA-EE-A2GB-06 2 238243405 238243405 G A COL6A3 Silent p.S3031S 0.37 TCGA-EE-A2GB-06 2 238267874 238267874 C T COL6A3 Missense_Mutation p.G2110E 0.56 probably_damaging(0.995) TCGA-EE-A2GB-06 2 241808382 241808382 C T AGXT Missense_Mutation p.P34S 0.36 tolerated(0.71) benign(0.037) TCGA-EE-A2GB-06 2 241808383 241808383 C T AGXT Missense_Mutation p.P34L 0.35 tolerated(0.1) possibly_damaging(0.812) TCGA-EE-A2GB-06 2 241808385 241808385 C T AGXT Missense_Mutation p.P35S 0.38 deleterious(0.03) benign(0.148) TCGA-EE-A2GB-06 2 26539791 26539791 C T GPR113 Missense_Mutation p.R164K 0.50 tolerated(0.13) benign(0.021) TCGA-EE-A2GB-06 2 29356623 29356623 C T CLIP4 Missense_Mutation p.A157V 0.31 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GB-06 2 31560586 31560586 A G XDH Missense_Mutation p.V1291A 0.59 deleterious(0.05) benign(0) TCGA-EE-A2GB-06 2 31621532 31621532 C T XDH Missense_Mutation p.G114R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 2 32875264 32875264 C T TTC27 Silent p.L202L 0.24 TCGA-EE-A2GB-06 2 42284396 42284396 G A PKDCC Missense_Mutation p.E420K 0.54 tolerated(0.2) benign(0.012) TCGA-EE-A2GB-06 2 42990265 42990265 G A OXER1 Missense_Mutation p.P352L 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 2 45774702 45774702 G A SRBD1 Silent p.F575F 0.29 TCGA-EE-A2GB-06 2 50780137 50780137 C T NRXN1 Silent p.R489R 0.17 TCGA-EE-A2GB-06 2 50847263 50847263 G A NRXN1 Missense_Mutation p.T446I 0.50 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GB-06 2 71741043 71741043 G A DYSF Missense_Mutation p.D251N 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2GB-06 2 85270737 85270737 G A KCMF1 Silent p.T125T 0.42 TCGA-EE-A2GB-06 2 85270738 85270738 G A KCMF1 Missense_Mutation p.D126N 0.42 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GB-06 2 86067158 86067158 A T ST3GAL5 3'UTR 0.33 TCGA-EE-A2GB-06 2 89156800 89156800 G A IGKC 3'UTR 0.29 TCGA-EE-A2GB-06 2 90153739 90153739 G A IGKV3D-15 5'UTR 0.19 TCGA-EE-A2GB-06 2 95942031 95942031 C T PROM2 Missense_Mutation p.P185L 0.23 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A2GB-06 2 95954256 95954256 G A PROM2 Nonsense_Mutation p.W787* 0.24 TCGA-EE-A2GB-06 2 95954257 95954257 G A PROM2 Nonsense_Mutation p.W787* 0.24 TCGA-EE-A2GB-06 2 98846523 98846523 G A VWA3B Missense_Mutation p.E721K 0.36 tolerated(0.11) benign(0.147) TCGA-EE-A2GB-06 2 99272887 99272887 G A MGAT4A Missense_Mutation p.S209L 0.49 deleterious(0) benign(0.371) TCGA-EE-A2GB-06 3 108129561 108129561 G A MYH15 Missense_Mutation p.S1475F 0.21 tolerated(0.26) benign(0.171) TCGA-EE-A2GB-06 3 108363029 108363029 A T DZIP3 Missense_Mutation p.K387M 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GB-06 3 11067514 11067514 C T SLC6A1 Missense_Mutation p.S302F 0.21 tolerated(0.11) benign(0.182) TCGA-EE-A2GB-06 3 114014634 114014634 G A TIGIT Missense_Mutation p.D102N 0.49 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GB-06 3 118870180 118870180 A G C3orf30 3'UTR 0.25 TCGA-EE-A2GB-06 3 120360465 120360465 C T HGD Missense_Mutation p.V284I 0.58 deleterious(0.03) benign(0.149) TCGA-EE-A2GB-06 3 120369647 120369647 G A HGD Silent p.F136F 0.27 TCGA-EE-A2GB-06 3 121289566 121289566 G A ARGFX Silent p.R2R 0.47 TCGA-EE-A2GB-06 3 121289648 121289648 G A ARGFX Missense_Mutation p.D30N 0.42 tolerated(0.36) benign(0.004) TCGA-EE-A2GB-06 3 121720271 121720271 C T ILDR1 Missense_Mutation p.G177E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 3 122274841 122274841 G A PARP9 Silent p.T94T 0.44 TCGA-EE-A2GB-06 3 124414982 124414982 G A AC080008.1 3'Flank 0.27 TCGA-EE-A2GB-06 3 12610448 12610448 C T MKRN2 Missense_Mutation p.S34F 0.38 deleterious(0.04) probably_damaging(1) TCGA-EE-A2GB-06 3 126224622 126224622 G A UROC1 Silent p.V245V 0.34 TCGA-EE-A2GB-06 3 131404763 131404763 G A CPNE4 Missense_Mutation p.R183C 0.21 deleterious(0.02) possibly_damaging(0.817) TCGA-EE-A2GB-06 3 139092233 139092233 T C COPB2 Missense_Mutation p.M306V 0.24 tolerated(1) benign(0.006) TCGA-EE-A2GB-06 3 140695203 140695203 C T SLC25A36 Missense_Mutation p.R282C 0.22 deleterious(0) benign(0.004) TCGA-EE-A2GB-06 3 148459398 148459398 G A AGTR1 Silent p.P192P 0.47 TCGA-EE-A2GB-06 3 150384765 150384765 G A FAM194A Nonsense_Mutation p.Q513* 0.58 TCGA-EE-A2GB-06 3 150916724 150916724 C T GPR171 Missense_Mutation p.M150I 0.53 tolerated(0.43) benign(0.094) TCGA-EE-A2GB-06 3 151597646 151597646 G A SUCNR1 5'UTR 0.54 TCGA-EE-A2GB-06 3 157178109 157178109 G A VEPH1 Silent p.I130I 0.55 TCGA-EE-A2GB-06 3 167031864 167031864 C T ZBBX Missense_Mutation p.E439K 0.32 tolerated(0.2) benign(0.093) TCGA-EE-A2GB-06 3 167159835 167159835 G A SERPINI2 3'UTR 0.58 TCGA-EE-A2GB-06 3 172046830 172046830 C T FNDC3B Missense_Mutation p.T448I 0.21 deleterious(0) benign(0.07) TCGA-EE-A2GB-06 3 184299085 184299085 C T EPHB3 Missense_Mutation p.T926I 0.52 tolerated(0.13) possibly_damaging(0.821) TCGA-EE-A2GB-06 3 186394992 186394992 C T HRG Missense_Mutation p.P300S 0.60 tolerated(0.13) benign(0) TCGA-EE-A2GB-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.31 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GB-06 3 190039919 190039920 - C CLDN1 Frame_Shift_Ins p.A26Gfs*43 0.22 TCGA-EE-A2GB-06 3 30032729 30032729 C T RBMS3 Intron 0.30 TCGA-EE-A2GB-06 3 38087107 38087107 G A DLEC1 Missense_Mutation p.R162Q 0.30 tolerated(0.14) possibly_damaging(0.842) TCGA-EE-A2GB-06 3 38739846 38739846 G A SCN10A Missense_Mutation p.S1622F 0.28 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A2GB-06 3 38927694 38927694 C T SCN11A Silent p.T957T 0.46 TCGA-EE-A2GB-06 3 39185379 39185379 C T CSRNP1 Missense_Mutation p.E313K 0.23 deleterious(0.03) possibly_damaging(0.886) TCGA-EE-A2GB-06 3 40529712 40529712 C T ZNF619 Missense_Mutation p.P611S 0.25 tolerated_low_confidence(0.08) benign(0.048) TCGA-EE-A2GB-06 3 43389431 43389431 C T SNRK Silent p.F560F 0.52 TCGA-EE-A2GB-06 3 43591317 43591317 A G ANO10 Silent p.V564V 0.24 TCGA-EE-A2GB-06 3 49662608 49662608 C T BSN Missense_Mutation p.P142L 0.67 unknown(0) TCGA-EE-A2GB-06 3 52433084 52433084 G A DNAH1 Nonsense_Mutation p.W4103* 0.56 TCGA-EE-A2GB-06 3 52852126 52852126 G A ITIH4 Silent p.L746L 0.50 TCGA-EE-A2GB-06 3 54959009 54959009 A C LRTM1 Missense_Mutation p.L81V 0.25 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GB-06 3 55038833 55038833 G A CACNA2D3 Missense_Mutation p.E912K 0.14 tolerated(0.37) benign(0.014) TCGA-EE-A2GB-06 3 55052300 55052300 C T CACNA2D3 Silent p.T981T 0.27 TCGA-EE-A2GB-06 3 55922539 55922539 C T ERC2 Silent p.Q814Q 0.28 TCGA-EE-A2GB-06 3 77612324 77612324 G A ROBO2 Missense_Mutation p.G525E 0.33 deleterious(0.03) probably_damaging(0.931) TCGA-EE-A2GB-06 3 85935391 85935391 G A CADM2 Missense_Mutation p.G141D 0.25 tolerated(0.05) benign(0.333) TCGA-EE-A2GB-06 3 85961612 85961612 G A CADM2 Missense_Mutation p.G200R 0.35 deleterious(0) possibly_damaging(0.835) TCGA-EE-A2GB-06 3 87017746 87017746 C T VGLL3 Missense_Mutation p.D311N 0.09 deleterious(0.03) benign(0.287) TCGA-EE-A2GB-06 3 9036073 9036073 C T SRGAP3 Missense_Mutation p.G788S 0.31 deleterious(0.02) possibly_damaging(0.867) TCGA-EE-A2GB-06 3 97356763 97356763 G A EPHA6 Missense_Mutation p.R874Q 0.32 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A2GB-06 3 97466295 97466295 G A EPHA6 Missense_Mutation p.E1053K 0.29 deleterious(0.04) possibly_damaging(0.466) TCGA-EE-A2GB-06 4 100264011 100264011 C T ADH1C Missense_Mutation p.E257K 0.43 probably_damaging(0.999) TCGA-EE-A2GB-06 4 10105519 10105519 C T WDR1 Splice_Site p.X77_splice 0.40 TCGA-EE-A2GB-06 4 104096030 104096030 G A CENPE Missense_Mutation p.R504C 0.50 possibly_damaging(0.855) TCGA-EE-A2GB-06 4 114824226 114824226 C T ARSJ Missense_Mutation p.G335E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 4 138451383 138451383 T C PCDH18 Missense_Mutation p.I620M 0.41 deleterious(0) possibly_damaging(0.836) TCGA-EE-A2GB-06 4 144801625 144801625 C T GYPE Silent p.V25V 0.11 TCGA-EE-A2GB-06 4 148407088 148407088 G A EDNRA Silent p.V85V 0.36 TCGA-EE-A2GB-06 4 15964408 15964408 G A FGFBP2 Silent p.S115S 0.27 TCGA-EE-A2GB-06 4 164272439 164272439 G A NPY5R Silent p.E338E 0.57 TCGA-EE-A2GB-06 4 166418810 166418810 G A CPE 3'UTR 0.26 TCGA-EE-A2GB-06 4 167012279 167012279 G A TLL1 Splice_Site p.X815_splice 0.45 TCGA-EE-A2GB-06 4 167012280 167012280 G A TLL1 Missense_Mutation p.A815T 0.54 tolerated(1) benign(0.001) TCGA-EE-A2GB-06 4 169158505 169158505 G A DDX60 Missense_Mutation p.S1448F 0.26 deleterious(0) possibly_damaging(0.761) TCGA-EE-A2GB-06 4 169589400 169589400 G A PALLD Missense_Mutation p.G323E 0.46 tolerated(0.07) benign(0.158) TCGA-EE-A2GB-06 4 169630191 169630191 C T PALLD Missense_Mutation p.T505I 0.11 deleterious(0) possibly_damaging(0.613) TCGA-EE-A2GB-06 4 175898197 175898197 G A ADAM29 Silent p.R507R 0.55 TCGA-EE-A2GB-06 4 175898960 175898960 C T ADAM29 Missense_Mutation p.P762S 0.24 tolerated(0.69) benign(0) TCGA-EE-A2GB-06 4 17829963 17829963 C T NCAPG Silent p.S572S 0.32 TCGA-EE-A2GB-06 4 187004681 187004681 C T TLR3 Missense_Mutation p.S614L 0.62 tolerated(0.65) benign(0.091) TCGA-EE-A2GB-06 4 187549725 187549725 G A FAT1 Missense_Mutation p.R1506C 0.43 probably_damaging(0.982) TCGA-EE-A2GB-06 4 189061057 189061057 C T TRIML1 Silent p.F115F 0.29 TCGA-EE-A2GB-06 4 20493457 20493457 C T SLIT2 Silent p.I283I 0.40 TCGA-EE-A2GB-06 4 20620478 20620478 G A SLIT2 Missense_Mutation p.R1479Q 0.57 tolerated(0.29) probably_damaging(0.986) TCGA-EE-A2GB-06 4 2695495 2695495 A C FAM193A Missense_Mutation p.T705P 0.43 tolerated(0.08) benign(0.262) TCGA-EE-A2GB-06 4 2701659 2701659 C T FAM193A Missense_Mutation p.P963S 0.34 tolerated_low_confidence(0.24) benign(0.001) TCGA-EE-A2GB-06 4 3318942 3318942 C T RGS12 Missense_Mutation p.H349Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GB-06 4 38829400 38829400 T A TLR6 Missense_Mutation p.E565D 0.44 tolerated(0.39) benign(0.011) TCGA-EE-A2GB-06 4 40245215 40245215 C T RHOH Missense_Mutation p.P70L 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 4 43032542 43032542 G A GRXCR1 Silent p.K286K 0.36 TCGA-EE-A2GB-06 4 46252598 46252598 C T GABRA2 Missense_Mutation p.M361I 0.43 tolerated(0.66) benign(0.001) TCGA-EE-A2GB-06 4 46390794 46390794 C T GABRA2 Intron 0.52 TCGA-EE-A2GB-06 4 48906587 48906587 C T OCIAD2 5'UTR 0.32 TCGA-EE-A2GB-06 4 65175549 65175549 T C TECRL Missense_Mutation p.I218V 0.51 tolerated(0.38) benign(0.114) TCGA-EE-A2GB-06 4 70156464 70156464 G A UGT2B28 Silent p.L415L 0.41 TCGA-EE-A2GB-06 4 70351018 70351018 C T UGT2B4 Missense_Mutation p.M406I 0.40 deleterious(0.05) benign(0.119) TCGA-EE-A2GB-06 4 71024285 71024285 C T C4orf40 Missense_Mutation p.P106S 0.42 tolerated(0.09) unknown(0) TCGA-EE-A2GB-06 4 73003804 73003804 G A NPFFR2 Missense_Mutation p.G228R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 4 76794331 76794331 G A PPEF2 Silent p.I485I 0.39 TCGA-EE-A2GB-06 4 85594125 85594125 C T WDFY3 Missense_Mutation p.E3493K 0.40 tolerated(0.08) possibly_damaging(0.677) TCGA-EE-A2GB-06 4 9783797 9783797 C T DRD5 Silent p.T48T 0.37 TCGA-EE-A2GB-06 5 101748841 101748841 C T SLCO6A1 Silent p.G493G 0.43 TCGA-EE-A2GB-06 5 113698918 113698918 T C KCNN2 Missense_Mutation p.M149T 0.48 deleterious(0) possibly_damaging(0.471) TCGA-EE-A2GB-06 5 121761086 121761086 G A SNCAIP Missense_Mutation p.E348K 0.44 tolerated(0.09) possibly_damaging(0.574) TCGA-EE-A2GB-06 5 121767736 121767736 G A SNCAIP Missense_Mutation p.D419N 0.48 tolerated(0.06) possibly_damaging(0.811) TCGA-EE-A2GB-06 5 132056301 132056301 G A KIF3A Missense_Mutation p.R206C 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 5 132234065 132234065 G A AFF4 Missense_Mutation p.H416Y 0.54 tolerated(0.06) possibly_damaging(0.811) TCGA-EE-A2GB-06 5 134117686 134117686 G A DDX46 Missense_Mutation p.E319K 0.24 tolerated(0.55) benign(0.186) TCGA-EE-A2GB-06 5 137275709 137275709 G A FAM13B 3'UTR 0.73 TCGA-EE-A2GB-06 5 137680705 137680705 C T FAM53C Missense_Mutation p.P110S 0.36 tolerated(0.4) probably_damaging(0.932) TCGA-EE-A2GB-06 5 13824376 13824376 C T DNAH5 Missense_Mutation p.A2171T 0.44 possibly_damaging(0.787) TCGA-EE-A2GB-06 5 140475519 140475519 G A PCDHB2 Missense_Mutation p.R382K 0.15 tolerated_low_confidence(1) benign(0.008) TCGA-EE-A2GB-06 5 140475983 140475983 G A PCDHB2 Missense_Mutation p.D537N 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GB-06 5 140557970 140557970 C T PCDHB8 Nonsense_Mutation p.Q119* 0.17 TCGA-EE-A2GB-06 5 140574090 140574090 C T PCDHB10 Silent p.T655T 0.76 TCGA-EE-A2GB-06 5 140581450 140581450 C T PCDHB11 Silent p.F701F 0.33 TCGA-EE-A2GB-06 5 140581661 140581661 C T PCDHB11 Missense_Mutation p.P772S 0.33 tolerated_low_confidence(0.09) benign(0.082) TCGA-EE-A2GB-06 5 140589325 140589325 C T PCDHB12 Silent p.S282S 0.22 TCGA-EE-A2GB-06 5 140723999 140723999 C T PCDHGA3 Silent p.F133F 0.18 TCGA-EE-A2GB-06 5 140731541 140731541 G A PCDHGB1 Missense_Mutation p.D572N 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 5 140788198 140788198 C T PCDHGB6 Silent p.F143F 0.21 TCGA-EE-A2GB-06 5 140803070 140803070 C T PCDHGA11 Missense_Mutation p.S759F 0.47 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-EE-A2GB-06 5 14280524 14280524 C T TRIO Missense_Mutation p.S109F 0.27 possibly_damaging(0.877) TCGA-EE-A2GB-06 5 147862759 147862759 C T HTR4 3'UTR 0.16 TCGA-EE-A2GB-06 5 150922725 150922725 G A FAT2 Nonsense_Mutation p.Q2655* 0.55 TCGA-EE-A2GB-06 5 153432477 153432477 C T MFAP3 Intron 0.36 TCGA-EE-A2GB-06 5 167489189 167489189 C T TENM2 Silent p.F478F 0.19 TCGA-EE-A2GB-06 5 167551955 167551955 G A TENM2 Silent p.R703R 0.33 TCGA-EE-A2GB-06 5 169533105 169533105 C T FOXI1 Silent p.S48S 0.56 TCGA-EE-A2GB-06 5 176764160 176764160 G A LMAN2 Missense_Mutation p.S256F 0.47 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GB-06 5 178555107 178555107 C T ADAMTS2 Missense_Mutation p.G824R 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2GB-06 5 35026524 35026524 T G AGXT2 Missense_Mutation p.E287D 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 5 35084649 35084649 T G PRLR Missense_Mutation p.Y99S 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 5 35965629 35965629 C T UGT3A1 Silent p.R234R 0.55 TCGA-EE-A2GB-06 5 35965630 35965630 C T UGT3A1 Missense_Mutation p.R234K 0.55 tolerated(0.15) probably_damaging(0.94) TCGA-EE-A2GB-06 5 35965889 35965889 C T UGT3A1 Missense_Mutation p.D148N 0.24 tolerated(0.4) probably_damaging(0.998) TCGA-EE-A2GB-06 5 39134964 39134964 C T FYB Silent p.R566R 0.23 TCGA-EE-A2GB-06 5 41186306 41186306 G A C6 Missense_Mutation p.H198Y 0.24 deleterious(0.01) possibly_damaging(0.826) TCGA-EE-A2GB-06 5 64492946 64492946 A G ADAMTS6 Silent p.L870L 0.30 TCGA-EE-A2GB-06 5 76645262 76645262 G A PDE8B Missense_Mutation p.E299K 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GB-06 5 840733 840733 G A ZDHHC11 Missense_Mutation p.L221F 0.26 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GB-06 6 106740973 106740973 G A ATG5 Missense_Mutation p.P82L 0.77 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 6 110098168 110098168 C T FIG4 Silent p.F598F 0.78 TCGA-EE-A2GB-06 6 129371187 129371187 G A LAMA2 Silent p.R79R 0.87 TCGA-EE-A2GB-06 6 134350739 134350739 C T SLC2A12 Missense_Mutation p.S75N 0.87 deleterious(0.04) benign(0.046) TCGA-EE-A2GB-06 6 136476825 136476825 G A PDE7B Missense_Mutation p.D214N 0.88 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GB-06 6 150117548 150117548 C T PCMT1 Intron 0.74 TCGA-EE-A2GB-06 6 159653194 159653194 G A FNDC1 Silent p.E550E 0.88 TCGA-EE-A2GB-06 6 160662605 160662605 G A SLC22A2 Missense_Mutation p.H468Y 0.81 tolerated(1) benign(0.029) TCGA-EE-A2GB-06 6 161160199 161160199 G A PLG Silent p.L659L 0.78 TCGA-EE-A2GB-06 6 161523006 161523006 C T MAP3K4 Missense_Mutation p.P1253S 0.69 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A2GB-06 6 161523007 161523007 C T MAP3K4 Missense_Mutation p.P1253L 0.72 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A2GB-06 6 16327065 16327065 G A ATXN1 Missense_Mutation p.P493S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 6 167717489 167717489 G T UNC93A Missense_Mutation p.K236N 0.34 tolerated(0.09) benign(0.111) TCGA-EE-A2GB-06 6 24205394 24205394 G A DCDC2 Intron 0.52 TCGA-EE-A2GB-06 6 26390244 26390244 C T BTN2A2 Missense_Mutation p.P246S 0.32 tolerated(0.11) benign(0.391) TCGA-EE-A2GB-06 6 28056993 28056993 T C ZNF165 Silent p.G401G 0.34 TCGA-EE-A2GB-06 6 30653724 30653724 G A PPP1R18 Silent p.G24G 0.46 TCGA-EE-A2GB-06 6 31525547 31525547 C T NFKBIL1 Silent p.A159A 0.35 TCGA-EE-A2GB-06 6 31855893 31855893 G A EHMT2 Missense_Mutation p.P557L 0.48 tolerated(0.39) benign(0.015) TCGA-EE-A2GB-06 6 31926938 31926938 C T SKIV2L 5'UTR 0.44 TCGA-EE-A2GB-06 6 33177794 33177794 G A RING1 Silent p.R114R 0.50 TCGA-EE-A2GB-06 6 36287321 36287321 C T C6orf222 Missense_Mutation p.V579I 0.44 tolerated(0.11) benign(0.006) TCGA-EE-A2GB-06 6 36287322 36287322 C T C6orf222 Silent p.L578L 0.43 TCGA-EE-A2GB-06 6 3727860 3727860 G A PXDC1 Missense_Mutation p.T168I 0.39 deleterious_low_confidence(0) benign(0.265) TCGA-EE-A2GB-06 6 38560427 38560427 G A BTBD9 Missense_Mutation p.P247S 0.15 tolerated(0.26) unknown(0) TCGA-EE-A2GB-06 6 38851743 38851743 A T DNAH8 Missense_Mutation p.N2526I 0.43 probably_damaging(0.993) TCGA-EE-A2GB-06 6 38906668 38906668 G A DNAH8 Missense_Mutation p.E3754K 0.21 benign(0.334) TCGA-EE-A2GB-06 6 40360426 40360426 G A LRFN2 Silent p.I542I 0.35 TCGA-EE-A2GB-06 6 41318535 41318535 G A NCR2 Missense_Mutation p.R255K 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GB-06 6 43325409 43325409 G A ZNF318 Missense_Mutation p.P215S 0.44 probably_damaging(0.999) TCGA-EE-A2GB-06 6 43400499 43400499 C T ABCC10 Missense_Mutation p.R261C 0.46 deleterious(0.03) benign(0.006) TCGA-EE-A2GB-06 6 44217799 44217799 A G HSP90AB1 Missense_Mutation p.K186E 0.33 deleterious(0) probably_damaging(0.958) TCGA-EE-A2GB-06 6 46847774 46847774 C T GPR116 Missense_Mutation p.E273K 0.21 tolerated(0.11) benign(0.016) TCGA-EE-A2GB-06 6 54806270 54806270 C T FAM83B Missense_Mutation p.S834F 0.16 deleterious(0) probably_damaging(0.935) TCGA-EE-A2GB-06 6 54806429 54806429 C A FAM83B Missense_Mutation p.P887Q 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 6 55039580 55039580 C T HCRTR2 Silent p.F65F 0.51 TCGA-EE-A2GB-06 6 70042883 70042883 G A BAI3 Silent p.K1057K 0.38 TCGA-EE-A2GB-06 6 76712689 76712689 G A IMPG1 Missense_Mutation p.P413S 0.43 tolerated(0.14) benign(0.004) TCGA-EE-A2GB-06 6 76782283 76782283 G A IMPG1 5'UTR 0.25 TCGA-EE-A2GB-06 6 88853935 88853935 G A CNR1 Silent p.I353I 0.18 TCGA-EE-A2GB-06 6 90405637 90405637 G A MDN1 Missense_Mutation p.S3153F 0.40 benign(0.438) TCGA-EE-A2GB-06 6 90424464 90424464 G A MDN1 Silent p.F2289F 0.23 TCGA-EE-A2GB-06 6 9933174 9933174 C T OFCC1 Missense_Mutation p.E29K 0.39 deleterious(0) benign(0.237) TCGA-EE-A2GB-06 7 100200132 100200132 C T PCOLCE Missense_Mutation p.A18V 0.65 tolerated(0.4) benign(0.003) TCGA-EE-A2GB-06 7 100679004 100679004 C T MUC17 Missense_Mutation p.S1436F 0.21 unknown(0) TCGA-EE-A2GB-06 7 105658498 105658498 G A CDHR3 Missense_Mutation p.E545K 0.23 deleterious(0.04) benign(0.14) TCGA-EE-A2GB-06 7 107704409 107704409 G A LAMB4 Missense_Mutation p.S953F 0.29 deleterious(0.03) probably_damaging(0.917) TCGA-EE-A2GB-06 7 108142951 108142951 C A PNPLA8 Missense_Mutation p.D448Y 0.68 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GB-06 7 113519888 113519888 C T PPP1R3A Missense_Mutation p.G420E 0.15 tolerated(1) benign(0.006) TCGA-EE-A2GB-06 7 11418702 11418702 C T THSD7A Missense_Mutation p.G1599E 0.46 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GB-06 7 116960676 116960676 C T WNT2 Nonsense_Mutation p.W85* 0.41 TCGA-EE-A2GB-06 7 117003732 117003734 CTA - ASZ1 In_Frame_Del p.S448del 0.53 TCGA-EE-A2GB-06 7 120591176 120591176 C T ING3 Intron 0.85 TCGA-EE-A2GB-06 7 120911467 120911467 G A CPED1 Missense_Mutation p.G951R 0.62 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GB-06 7 123599727 123599727 G A SPAM1 Missense_Mutation p.G412S 0.14 tolerated(0.53) benign(0.01) TCGA-EE-A2GB-06 7 126409978 126409978 C T GRM8 Missense_Mutation p.R433Q 0.60 tolerated(0.53) benign(0.01) TCGA-EE-A2GB-06 7 127254549 127254549 C T PAX4 Silent p.R133R 0.31 TCGA-EE-A2GB-06 7 128626824 128626824 G A TNPO3 Missense_Mutation p.S550F 0.26 deleterious(0.02) benign(0.014) TCGA-EE-A2GB-06 7 130353588 130353588 G A TSGA13 3'UTR 0.19 TCGA-EE-A2GB-06 7 13935631 13935631 G A ETV1 Missense_Mutation p.P432S 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.64 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GB-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.64 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2GB-06 7 141734562 141734562 G A MGAM Missense_Mutation p.G627E 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 7 141755362 141755362 G A MGAM Missense_Mutation p.D1107N 0.22 tolerated(0.21) benign(0.392) TCGA-EE-A2GB-06 7 148702402 148702402 G A PDIA4 Silent p.A451A 0.63 TCGA-EE-A2GB-06 7 150656680 150656680 G A KCNH2 Missense_Mutation p.P151L 0.16 tolerated(0.08) benign(0.007) TCGA-EE-A2GB-06 7 150732708 150732708 C T ABCB8 Missense_Mutation p.S269F 0.66 deleterious(0) probably_damaging(0.952) TCGA-EE-A2GB-06 7 151052945 151052945 C T NUB1 Silent p.F193F 0.17 TCGA-EE-A2GB-06 7 154875939 154875939 G A HTR5A Silent p.G272G 0.69 TCGA-EE-A2GB-06 7 21856294 21856294 G A DNAH11 Silent p.L3521L 0.55 TCGA-EE-A2GB-06 7 22347999 22347999 T C RAPGEF5 Silent p.Q60Q 0.31 TCGA-EE-A2GB-06 7 2418375 2418375 C T EIF3B Missense_Mutation p.R736C 0.56 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2GB-06 7 26724414 26724414 C T SKAP2 Missense_Mutation p.G310R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 7 27203175 27203175 C T HOXA9 3'UTR 0.16 TCGA-EE-A2GB-06 7 2979485 2979485 C T CARD11 Silent p.K254K 0.54 TCGA-EE-A2GB-06 7 31014610 31014610 C T GHRHR Silent p.S279S 0.27 TCGA-EE-A2GB-06 7 37272719 37272719 G A ELMO1 Missense_Mutation p.S177L 0.35 deleterious(0.01) benign(0.054) TCGA-EE-A2GB-06 7 38370226 38370226 C T TRGV8 Silent p.G24G 0.44 TCGA-EE-A2GB-06 7 44806175 44806175 G A ZMIZ2 Silent p.T856T 0.45 TCGA-EE-A2GB-06 7 47913522 47913522 C T PKD1L1 Missense_Mutation p.G1291R 0.11 tolerated(0.2) possibly_damaging(0.615) TCGA-EE-A2GB-06 7 48018031 48018031 T A HUS1 Missense_Mutation p.T114S 0.43 tolerated(0.1) benign(0.051) TCGA-EE-A2GB-06 7 48312681 48312681 A C ABCA13 Missense_Mutation p.K1140Q 0.16 benign(0.05) TCGA-EE-A2GB-06 7 48316082 48316082 C T ABCA13 Silent p.S2273S 0.26 TCGA-EE-A2GB-06 7 53103598 53103598 C T POM121L12 Silent p.I78I 0.30 TCGA-EE-A2GB-06 7 5967802 5967802 G A RSPH10B Intron 0.21 TCGA-EE-A2GB-06 7 5967803 5967803 G A RSPH10B Intron 0.20 TCGA-EE-A2GB-06 7 62758752 62758752 C T ZNF733P RNA 0.17 TCGA-EE-A2GB-06 7 64438429 64438429 C T ZNF117 3'UTR 0.75 TCGA-EE-A2GB-06 7 70255264 70255264 C T AUTS2 Missense_Mutation p.S1021L 0.17 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A2GB-06 7 71275429 71275429 G A CALN1 Missense_Mutation p.H184Y 0.61 deleterious(0.04) benign(0.004) TCGA-EE-A2GB-06 7 75630321 75630321 C T STYXL1 Splice_Site p.X233_splice 0.31 TCGA-EE-A2GB-06 7 76889382 76889382 C T CCDC146 Missense_Mutation p.S272F 0.58 deleterious(0.03) benign(0.007) TCGA-EE-A2GB-06 7 82784725 82784725 G A PCLO Missense_Mutation p.P411L 0.61 possibly_damaging(0.851) TCGA-EE-A2GB-06 7 82784726 82784726 G A PCLO Missense_Mutation p.P411S 0.59 possibly_damaging(0.803) TCGA-EE-A2GB-06 7 88964217 88964217 C A ZNF804B Missense_Mutation p.P641T 0.70 tolerated(0.37) benign(0.146) TCGA-EE-A2GB-06 7 93101800 93101800 C T CALCR Splice_Site p.X124_splice 0.16 TCGA-EE-A2GB-06 7 98457947 98457947 C T TMEM130 Missense_Mutation p.D136N 0.60 tolerated(1) benign(0) TCGA-EE-A2GB-06 8 102585948 102585948 G A GRHL2 Missense_Mutation p.G263R 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 8 10622952 10622952 C T PINX1 Missense_Mutation p.E316K 0.22 tolerated(0.14) possibly_damaging(0.612) TCGA-EE-A2GB-06 8 106814923 106814923 C T ZFPM2 Silent p.A871A 0.28 TCGA-EE-A2GB-06 8 10756182 10756182 G A XKR6 Silent p.I402I 0.46 TCGA-EE-A2GB-06 8 109001367 109001367 C T RSPO2 Missense_Mutation p.G67E 0.33 deleterious(0.02) possibly_damaging(0.713) TCGA-EE-A2GB-06 8 109796576 109796576 A C TMEM74 Missense_Mutation p.M251R 0.28 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GB-06 8 110655095 110655095 G A SYBU Missense_Mutation p.R31W 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 8 113318249 113318249 G A CSMD3 Silent p.T2686T 0.57 TCGA-EE-A2GB-06 8 113318250 113318250 G T CSMD3 Missense_Mutation p.T2686N 0.57 tolerated(0.1) possibly_damaging(0.762) TCGA-EE-A2GB-06 8 113988153 113988153 G A CSMD3 Missense_Mutation p.P419S 0.31 tolerated(0.83) benign(0) TCGA-EE-A2GB-06 8 119936747 119936747 G A TNFRSF11B Missense_Mutation p.P358S 0.51 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GB-06 8 142176349 142176349 G A DENND3 Silent p.K458K 0.26 TCGA-EE-A2GB-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.17 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GB-06 8 144940559 144940559 G A EPPK1 Missense_Mutation p.A2288V 0.10 probably_damaging(0.942) TCGA-EE-A2GB-06 8 144945250 144945250 G A EPPK1 Silent p.I724I 0.30 TCGA-EE-A2GB-06 8 145998669 145998669 C T ZNF34 Silent p.R555R 0.31 TCGA-EE-A2GB-06 8 23049351 23049351 C T TNFRSF10A Silent p.R421R 0.26 TCGA-EE-A2GB-06 8 23429126 23429126 A G SLC25A37 Missense_Mutation p.K259E 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 8 24342831 24342831 C T ADAM7 Missense_Mutation p.P306L 0.22 tolerated(0.54) probably_damaging(0.909) TCGA-EE-A2GB-06 8 24775166 24775166 G A NEFM Missense_Mutation p.E600K 0.57 deleterious(0.04) unknown(0) TCGA-EE-A2GB-06 8 25364185 25364185 C T CDCA2 Missense_Mutation p.S668L 0.14 tolerated(0.21) benign(0.009) TCGA-EE-A2GB-06 8 30969258 30969258 T C WRN Missense_Mutation p.V739A 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 8 3265606 3265606 A C CSMD1 Missense_Mutation p.F629C 0.27 probably_damaging(0.994) TCGA-EE-A2GB-06 8 3265640 3265640 G C CSMD1 Missense_Mutation p.P618A 0.18 possibly_damaging(0.492) TCGA-EE-A2GB-06 8 36793308 36793308 G A KCNU1 Nonsense_Mutation p.W1107* 0.34 TCGA-EE-A2GB-06 8 37697721 37697721 C T GPR124 Missense_Mutation p.T865I 0.46 deleterious(0) possibly_damaging(0.595) TCGA-EE-A2GB-06 8 38879213 38879213 C T ADAM9 Silent p.L242L 0.68 TCGA-EE-A2GB-06 8 39091417 39091417 G A ADAM32 Splice_Site p.X545_splice 0.27 TCGA-EE-A2GB-06 8 39495126 39495126 C T ADAM18 Missense_Mutation p.S244F 0.23 deleterious(0.03) benign(0.2) TCGA-EE-A2GB-06 8 39505984 39505984 C T ADAM18 Nonsense_Mutation p.Q390* 0.14 TCGA-EE-A2GB-06 8 42263011 42263011 C T VDAC3 3'Flank 0.64 TCGA-EE-A2GB-06 8 54147319 54147319 C T OPRK1 Missense_Mutation p.D204N 0.12 tolerated(0.49) possibly_damaging(0.575) TCGA-EE-A2GB-06 8 57079149 57079149 G A PLAG1 Missense_Mutation p.P386S 0.60 tolerated(0.47) benign(0.004) TCGA-EE-A2GB-06 8 59851871 59851871 G A TOX Missense_Mutation p.S134F 0.46 tolerated(0.08) possibly_damaging(0.641) TCGA-EE-A2GB-06 8 6728103 6728103 C T DEFB1 3'UTR 0.67 TCGA-EE-A2GB-06 8 69017486 69017486 C T PREX2 Intron 0.58 TCGA-EE-A2GB-06 8 77763759 77763759 C T ZFHX4 Silent p.F1534F 0.20 TCGA-EE-A2GB-06 8 77776277 77776277 C T ZFHX4 Missense_Mutation p.P3443S 0.29 probably_damaging(0.994) TCGA-EE-A2GB-06 8 86253845 86253845 C T CA1 Missense_Mutation p.G7E 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2GB-06 9 113173882 113173882 G A SVEP1 Missense_Mutation p.R2037W 0.81 probably_damaging(1) TCGA-EE-A2GB-06 9 113547266 113547266 G A MUSK Missense_Mutation p.R519Q 0.35 tolerated(0.1) possibly_damaging(0.793) TCGA-EE-A2GB-06 9 118974126 118974126 C T PAPPA Silent p.S611S 0.79 TCGA-EE-A2GB-06 9 123780002 123780002 G A C5 Silent p.I545I 0.61 TCGA-EE-A2GB-06 9 125316149 125316149 C T OR1N2 Missense_Mutation p.S234F 0.82 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GB-06 9 125617595 125617595 G A RC3H2 Missense_Mutation p.P895S 0.63 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A2GB-06 9 128088795 128088795 G A GAPVD1 Silent p.E653E 0.77 TCGA-EE-A2GB-06 9 130507009 130507009 G A SH2D3C Missense_Mutation p.P545L 0.80 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GB-06 9 135942234 135942234 C T CEL Missense_Mutation p.P230S 0.77 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GB-06 9 135962419 135962419 C T CELP RNA 0.74 TCGA-EE-A2GB-06 9 136083987 136083987 G A OBP2B Silent p.I25I 0.52 TCGA-EE-A2GB-06 9 137707437 137707437 C T COL5A1 Missense_Mutation p.P1344S 0.83 unknown(0) TCGA-EE-A2GB-06 9 138719414 138719414 G A CAMSAP1 Silent p.H354H 0.21 TCGA-EE-A2GB-06 9 139401833 139401833 G A NOTCH1 Silent p.S1189S 0.40 TCGA-EE-A2GB-06 9 139658369 139658369 G A LCN15 Silent p.I63I 0.53 TCGA-EE-A2GB-06 9 140040183 140040183 C T GRIN1 Silent p.I133I 0.47 TCGA-EE-A2GB-06 9 140058347 140058347 G A GRIN1 Silent p.K881K 0.51 TCGA-EE-A2GB-06 9 17747095 17747095 G A SH3GL2 Missense_Mutation p.G26E 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A2GB-06 9 21166467 21166467 G A IFNA21 Missense_Mutation p.P49S 0.78 tolerated(0.06) benign(0.186) TCGA-EE-A2GB-06 9 21217032 21217032 G A IFNA16 Silent p.F91F 0.83 TCGA-EE-A2GB-06 9 36102143 36102143 G A RECK Missense_Mutation p.E451K 0.21 tolerated(0.27) benign(0.004) TCGA-EE-A2GB-06 9 74349793 74349793 G A TMEM2 Missense_Mutation p.S441F 0.77 deleterious(0.02) possibly_damaging(0.519) TCGA-EE-A2GB-06 9 86554458 86554458 G A C9orf64 Missense_Mutation p.P332S 0.76 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GB-06 X 102339395 102339395 G A NXF3 Missense_Mutation p.R76W 0.35 tolerated(0.18) benign(0.03) TCGA-EE-A2GB-06 X 109963152 109963152 C T CHRDL1 Missense_Mutation p.G151E 0.92 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GB-06 X 111020103 111020103 C T TRPC5 Missense_Mutation p.S787N 0.89 tolerated(0.39) benign(0.001) TCGA-EE-A2GB-06 X 111155741 111155741 C T TRPC5 Silent p.E226E 0.85 TCGA-EE-A2GB-06 X 123680790 123680790 C T TENM1 Missense_Mutation p.R862Q 0.86 deleterious(0.02) possibly_damaging(0.578) TCGA-EE-A2GB-06 X 150907032 150907032 C T CNGA2 Missense_Mutation p.A26V 0.35 tolerated_low_confidence(0.21) benign(0) TCGA-EE-A2GB-06 X 18195771 18195771 C T BEND2 Silent p.K516K 0.91 TCGA-EE-A2GB-06 X 3235770 3235770 C T MXRA5 Nonsense_Mutation p.W1984* 0.85 TCGA-EE-A2GB-06 X 37027408 37027408 G A FAM47C Missense_Mutation p.E309K 0.49 tolerated(0.2) possibly_damaging(0.486) TCGA-EE-A2GB-06 X 48549585 48549585 C T WAS 3'UTR 0.44 TCGA-EE-A2GB-06 X 50659473 50659473 G A BMP15 Missense_Mutation p.D349N 0.92 tolerated(0.42) benign(0.06) TCGA-EE-A2GB-06 X 52681972 52681972 C T SSX7 Silent p.E44E 0.79 TCGA-EE-A2GB-06 X 53436194 53436194 G A SMC1A Silent p.S448S 1.00 TCGA-EE-A2GB-06 X 70341598 70341598 C T MED12 Missense_Mutation p.P345S 0.79 benign(0.101) TCGA-EE-A2GB-06 X 71425174 71425174 C T ERCC6L Missense_Mutation p.G1148E 0.90 tolerated(0.17) benign(0.059) TCGA-EE-A2GB-06 X 73962071 73962071 G A KIAA2022 Missense_Mutation p.S774F 0.38 deleterious(0.01) possibly_damaging(0.784) TCGA-EE-A2GB-06 X 88008944 88008944 T C CPXCR1 Missense_Mutation p.Y177H 0.58 deleterious(0) probably_damaging(0.934) TCGA-EE-A2GC-06 10 100249824 100249824 A G HPSE2 Missense_Mutation p.C484R 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 10 100249933 100249933 G A HPSE2 Silent p.L447L 0.43 TCGA-EE-A2GC-06 10 102048186 102048186 G A PKD2L1 Silent p.S795S 0.39 TCGA-EE-A2GC-06 10 102267248 102267248 G A SEC31B Missense_Mutation p.P239L 0.19 deleterious(0.02) possibly_damaging(0.766) TCGA-EE-A2GC-06 10 102689755 102689755 G A FAM178A Splice_Site p.X778_splice 0.25 TCGA-EE-A2GC-06 10 102739941 102739941 C T SEMA4G Silent p.V397V 0.25 TCGA-EE-A2GC-06 10 102740680 102740680 C T SEMA4G Silent p.P523P 0.48 TCGA-EE-A2GC-06 10 102748999 102748999 G A C10orf2 Silent p.E344E 0.26 TCGA-EE-A2GC-06 10 103339296 103339296 C T POLL Missense_Mutation p.G548S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 104125239 104125239 C T GBF1 Missense_Mutation p.P730L 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-EE-A2GC-06 10 104165244 104165244 G A PSD Missense_Mutation p.P729S 0.18 tolerated(0.31) possibly_damaging(0.612) TCGA-EE-A2GC-06 10 104173563 104173563 C T PSD Missense_Mutation p.E506K 0.45 deleterious(0.04) benign(0.097) TCGA-EE-A2GC-06 10 104248026 104248026 G A ACTR1A Nonsense_Mutation p.R66* 0.15 TCGA-EE-A2GC-06 10 104248027 104248027 G A ACTR1A Silent p.H65H 0.15 TCGA-EE-A2GC-06 10 104262445 104262445 C T ACTR1A 5'UTR 0.50 TCGA-EE-A2GC-06 10 105386875 105386875 G A SH3PXD2A Missense_Mutation p.S230F 0.44 tolerated(0.79) benign(0.361) TCGA-EE-A2GC-06 10 105794047 105794047 C T COL17A1 Missense_Mutation p.G1271E 0.27 probably_damaging(1) TCGA-EE-A2GC-06 10 106152114 106152114 G A CCDC147 Missense_Mutation p.D497N 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2GC-06 10 106160609 106160609 C T CCDC147 Missense_Mutation p.R663C 0.27 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 10 106214279 106214279 G A CCDC147 Missense_Mutation p.M870I 0.23 tolerated_low_confidence(0.59) benign(0) TCGA-EE-A2GC-06 10 115481443 115481443 C T CASP7 Missense_Mutation p.A127V 0.19 deleterious(0.03) benign(0.446) TCGA-EE-A2GC-06 10 115895958 115895958 G A C10orf118 Silent p.V458V 0.17 TCGA-EE-A2GC-06 10 116048899 116048899 G A VWA2 Silent p.R591R 0.13 TCGA-EE-A2GC-06 10 116417999 116417999 G A ABLIM1 5'UTR 0.21 TCGA-EE-A2GC-06 10 116620595 116620595 C T FAM160B1 Missense_Mutation p.P679S 0.19 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 10 118969163 118969163 C T KCNK18 Missense_Mutation p.P170S 0.46 tolerated(0.53) benign(0.004) TCGA-EE-A2GC-06 10 119044086 119044086 G A PDZD8 Missense_Mutation p.P720S 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A2GC-06 10 12191670 12191670 C T SEC61A2 Silent p.I99I 0.20 TCGA-EE-A2GC-06 10 122263337 122263337 G A PPAPDC1A Missense_Mutation p.E22K 0.21 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GC-06 10 123847306 123847306 T C TACC2 Missense_Mutation p.L1764P 0.74 benign(0.01) TCGA-EE-A2GC-06 10 124008235 124008235 G A TACC2 Missense_Mutation p.D2824N 0.46 probably_damaging(1) TCGA-EE-A2GC-06 10 124050611 124050611 G A BTBD16 Silent p.L164L 0.25 TCGA-EE-A2GC-06 10 124339103 124339103 C T DMBT1 Missense_Mutation p.S230F 0.21 tolerated(0.1) probably_damaging(0.969) TCGA-EE-A2GC-06 10 124339268 124339268 G A DMBT1 Missense_Mutation p.G285E 0.23 tolerated(0.2) probably_damaging(1) TCGA-EE-A2GC-06 10 124351993 124351993 C T DMBT1 Silent p.P794P 0.44 TCGA-EE-A2GC-06 10 124399865 124399865 C T DMBT1 Missense_Mutation p.L2289F 0.20 tolerated(0.23) probably_damaging(0.928) TCGA-EE-A2GC-06 10 124457272 124457272 T C C10orf120 Missense_Mutation p.K329E 0.44 deleterious(0.02) benign(0.26) TCGA-EE-A2GC-06 10 124907786 124907786 C T HMX2 5'UTR 0.28 TCGA-EE-A2GC-06 10 127737933 127737933 G A ADAM12 Silent p.I605I 0.22 TCGA-EE-A2GC-06 10 128788767 128788767 C T DOCK1 Missense_Mutation p.L125F 0.52 deleterious(0) possibly_damaging(0.601) TCGA-EE-A2GC-06 10 131565116 131565116 G A MGMT Missense_Mutation p.G191E 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 10 13214476 13214476 C T MCM10 Silent p.S150S 0.51 TCGA-EE-A2GC-06 10 13380726 13380726 G A SEPHS1 Silent p.I92I 0.19 TCGA-EE-A2GC-06 10 134754509 134754509 C T TTC40 Missense_Mutation p.G121E 0.44 tolerated(0.39) probably_damaging(0.926) TCGA-EE-A2GC-06 10 135160843 135160843 G A PRAP1 5'UTR 0.33 TCGA-EE-A2GC-06 10 13693946 13693946 C T FRMD4A Missense_Mutation p.D1027N 0.21 deleterious_low_confidence(0.04) benign(0.073) TCGA-EE-A2GC-06 10 15107690 15107690 G A OLAH Silent p.K223K 0.19 TCGA-EE-A2GC-06 10 15639292 15639292 G A ITGA8 Nonsense_Mutation p.R709* 0.15 TCGA-EE-A2GC-06 10 16877024 16877024 C T CUBN Missense_Mutation p.D3451N 0.19 tolerated(0.16) probably_damaging(1) TCGA-EE-A2GC-06 10 16982177 16982177 C T CUBN Missense_Mutation p.G1801E 0.48 tolerated(0.06) benign(0.424) TCGA-EE-A2GC-06 10 17276783 17276783 C T VIM Missense_Mutation p.S325F 0.13 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2GC-06 10 17726680 17726680 G A STAM Silent p.K44K 0.28 TCGA-EE-A2GC-06 10 18828607 18828607 G A CACNB2 Missense_Mutation p.R646Q 0.45 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-EE-A2GC-06 10 20335861 20335861 G A PLXDC2 Missense_Mutation p.D130N 0.22 tolerated(0.22) benign(0.007) TCGA-EE-A2GC-06 10 20506404 20506404 G A PLXDC2 Missense_Mutation p.R391Q 0.30 tolerated(0.48) benign(0) TCGA-EE-A2GC-06 10 21097555 21097555 C T NEBL Missense_Mutation p.R882Q 0.31 tolerated(0.52) benign(0.006) TCGA-EE-A2GC-06 10 21101729 21101729 C T NEBL Silent p.V829V 0.36 TCGA-EE-A2GC-06 10 21112214 21112214 C T NEBL Missense_Mutation p.E629K 0.29 tolerated(0.25) benign(0.031) TCGA-EE-A2GC-06 10 21185941 21185941 A C NEBL Silent p.V33V 0.38 TCGA-EE-A2GC-06 10 24762289 24762289 C T KIAA1217 Missense_Mutation p.P327S 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 10 24884668 24884668 G A ARHGAP21 Silent p.L1230L 0.10 TCGA-EE-A2GC-06 10 26241046 26241046 C T MYO3A Missense_Mutation p.P3S 0.45 tolerated_low_confidence(0.11) benign(0.176) TCGA-EE-A2GC-06 10 26455066 26455066 G A MYO3A Missense_Mutation p.E1024K 0.16 tolerated(0.14) benign(0.173) TCGA-EE-A2GC-06 10 26500877 26500877 C T MYO3A Silent p.L1612L 0.28 TCGA-EE-A2GC-06 10 27425278 27425278 G A YME1L1 Missense_Mutation p.S213L 0.37 deleterious(0.03) benign(0.019) TCGA-EE-A2GC-06 10 27536471 27536471 C T RP11-85G18.6 Intron 0.17 TCGA-EE-A2GC-06 10 27536472 27536472 C T RP11-85G18.6 Intron 0.17 TCGA-EE-A2GC-06 10 28023641 28023641 C T MKX Silent p.E194E 0.17 TCGA-EE-A2GC-06 10 28024185 28024185 C T MKX Missense_Mutation p.R156Q 0.31 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2GC-06 10 28101521 28101521 C T ARMC4 Missense_Mutation p.D1019N 0.14 tolerated(0.3) benign(0.094) TCGA-EE-A2GC-06 10 28223958 28223958 C T ARMC4 Missense_Mutation p.V826I 0.43 tolerated(0.16) benign(0.027) TCGA-EE-A2GC-06 10 28224106 28224106 C T ARMC4 Silent p.V776V 0.42 TCGA-EE-A2GC-06 10 28224174 28224174 C T ARMC4 Missense_Mutation p.E754K 0.20 tolerated(0.19) possibly_damaging(0.612) TCGA-EE-A2GC-06 10 28233286 28233286 G A ARMC4 Silent p.G536G 0.24 TCGA-EE-A2GC-06 10 28233336 28233336 C T ARMC4 Missense_Mutation p.E520K 0.30 tolerated(0.14) benign(0.188) TCGA-EE-A2GC-06 10 28273212 28273212 T C ARMC4 Missense_Mutation p.S195G 0.27 tolerated(0.07) benign(0.001) TCGA-EE-A2GC-06 10 28378648 28378648 G A MPP7 Missense_Mutation p.P359S 0.50 tolerated(0.18) benign(0.008) TCGA-EE-A2GC-06 10 28409531 28409531 C T MPP7 Missense_Mutation p.E228K 0.42 tolerated(0.06) benign(0.219) TCGA-EE-A2GC-06 10 30315537 30315537 C T KIAA1462 Silent p.G1180G 0.25 TCGA-EE-A2GC-06 10 30336690 30336690 C T KIAA1462 Missense_Mutation p.D18N 0.44 tolerated(0.69) benign(0.013) TCGA-EE-A2GC-06 10 30747036 30747036 C T MAP3K8 Silent p.I299I 0.47 TCGA-EE-A2GC-06 10 31809938 31809938 C T ZEB1 Missense_Mutation p.P560S 0.22 tolerated(0.17) benign(0.006) TCGA-EE-A2GC-06 10 32742280 32742280 C T CCDC7 Silent p.S96S 0.40 TCGA-EE-A2GC-06 10 34606123 34606123 C T PARD3 Missense_Mutation p.G996R 0.23 tolerated(0.36) benign(0.369) TCGA-EE-A2GC-06 10 34636950 34636950 C T PARD3 Missense_Mutation p.G721R 0.25 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A2GC-06 10 34649112 34649112 C T PARD3 Missense_Mutation p.D595N 0.25 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GC-06 10 35324198 35324198 G A CUL2 Missense_Mutation p.R321C 0.31 deleterious(0.03) benign(0.002) TCGA-EE-A2GC-06 10 37438607 37438607 G A ANKRD30A Silent p.K468K 0.41 TCGA-EE-A2GC-06 10 37442579 37442579 G A ANKRD30A Missense_Mutation p.G540E 0.06 tolerated(0.33) probably_damaging(0.972) TCGA-EE-A2GC-06 10 37508087 37508087 C T ANKRD30A Silent p.T1093T 0.23 TCGA-EE-A2GC-06 10 38407308 38407308 C T ZNF37A Missense_Mutation p.P410L 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 10 43016349 43016349 G A ZNF37BP RNA 0.50 TCGA-EE-A2GC-06 10 43691949 43691949 C T RASGEF1A Missense_Mutation p.E466K 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 10 45642860 45642860 G A RP11-445N18.7 RNA 0.17 TCGA-EE-A2GC-06 10 46611721 46611721 G A PTPN20A Missense_Mutation p.S42L 0.61 deleterious(0.02) benign(0.053) TCGA-EE-A2GC-06 10 48390014 48390014 G A RBP3 Silent p.P288P 0.16 TCGA-EE-A2GC-06 10 48416410 48416410 C T GDF2 Missense_Mutation p.R95K 0.47 tolerated(0.2) benign(0.309) TCGA-EE-A2GC-06 10 48429138 48429138 C T GDF10 Missense_Mutation p.D250N 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 10 48429221 48429221 G A GDF10 Missense_Mutation p.S222F 0.21 deleterious(0.04) possibly_damaging(0.642) TCGA-EE-A2GC-06 10 49440233 49440233 C T FRMPD2 Missense_Mutation p.G365R 0.48 tolerated(0.55) probably_damaging(1) TCGA-EE-A2GC-06 10 50531454 50531454 G A C10orf71 Silent p.L288L 0.60 TCGA-EE-A2GC-06 10 50690779 50690779 G A ERCC6 Missense_Mutation p.S708F 0.47 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GC-06 10 50873084 50873084 C A CHAT Missense_Mutation p.Q747K 0.18 tolerated_low_confidence(0.37) benign(0.002) TCGA-EE-A2GC-06 10 50948771 50948771 C T OGDHL Missense_Mutation p.E709K 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 50964927 50964927 G A OGDHL Silent p.P90P 0.45 TCGA-EE-A2GC-06 10 5144305 5144305 C T AKR1C3 Missense_Mutation p.P195S 0.34 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A2GC-06 10 51465404 51465404 G A AGAP7 Missense_Mutation p.S351F 0.20 deleterious(0) possibly_damaging(0.82) TCGA-EE-A2GC-06 10 51994257 51994257 C T ASAH2 Missense_Mutation p.G248E 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 10 52071083 52071083 C T SGMS1 Silent p.G278G 0.23 TCGA-EE-A2GC-06 10 52103973 52103973 C T SGMS1 5'UTR 0.21 TCGA-EE-A2GC-06 10 54041916 54041916 G A PRKG1 Missense_Mutation p.D517N 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 55600225 55600225 G A PCDH15 Missense_Mutation p.P1280S 0.20 tolerated(0.18) probably_damaging(0.99) TCGA-EE-A2GC-06 10 5682645 5682645 G A ASB13 3'UTR 0.36 TCGA-EE-A2GC-06 10 6104202 6104202 C T IL2RA 5'UTR 0.27 TCGA-EE-A2GC-06 10 61833636 61833636 C T ANK3 Missense_Mutation p.E2335K 0.25 probably_damaging(0.959) TCGA-EE-A2GC-06 10 61959912 61959912 C T ANK3 Missense_Mutation p.G489E 0.31 probably_damaging(1) TCGA-EE-A2GC-06 10 61959913 61959913 C T ANK3 Missense_Mutation p.G489R 0.31 probably_damaging(1) TCGA-EE-A2GC-06 10 62648613 62648613 G A RHOBTB1 Silent p.I271I 0.48 TCGA-EE-A2GC-06 10 63983057 63983057 G A RTKN2 Silent p.L241L 0.15 TCGA-EE-A2GC-06 10 64159307 64159307 C T ZNF365 Intron 0.47 TCGA-EE-A2GC-06 10 6472779 6472779 G A PRKCQ Missense_Mutation p.P653L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 10 6521089 6521089 G A PRKCQ Silent p.F406F 0.35 TCGA-EE-A2GC-06 10 68940116 68940116 G A CTNNA3 Missense_Mutation p.R336C 0.56 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GC-06 10 69966578 69966578 G A MYPN Silent p.K1237K 0.20 TCGA-EE-A2GC-06 10 70332852 70332852 C T TET1 Missense_Mutation p.P253S 0.17 tolerated(0.39) benign(0.007) TCGA-EE-A2GC-06 10 70515274 70515274 C T CCAR1 Silent p.L536L 0.35 TCGA-EE-A2GC-06 10 71681679 71681679 C T COL13A1 Silent p.L366L 0.30 TCGA-EE-A2GC-06 10 71682509 71682509 G A COL13A1 Missense_Mutation p.E386K 0.38 tolerated(0.06) possibly_damaging(0.904) TCGA-EE-A2GC-06 10 71880960 71880960 G A AIFM2 Missense_Mutation p.P101L 0.22 tolerated(0.55) benign(0.102) TCGA-EE-A2GC-06 10 72358730 72358730 G A PRF1 Silent p.L249L 0.49 TCGA-EE-A2GC-06 10 72628160 72628160 C - SGPL1 Frame_Shift_Del p.F226Lfs*29 0.12 TCGA-EE-A2GC-06 10 73405631 73405631 C T CDH23 Missense_Mutation p.S395F 0.56 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 10 73533131 73533131 G C C10orf54 Missense_Mutation p.F22L 0.31 tolerated(0.31) benign(0.048) TCGA-EE-A2GC-06 10 73587852 73587852 C T PSAP Silent p.R213R 0.51 TCGA-EE-A2GC-06 10 74806829 74806829 G A P4HA1 Missense_Mutation p.R311C 0.42 deleterious(0) possibly_damaging(0.889) TCGA-EE-A2GC-06 10 75399790 75399790 C T MYOZ1 5'UTR 0.28 TCGA-EE-A2GC-06 10 75960589 75960589 C T ADK Missense_Mutation p.L45F 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2GC-06 10 75960590 75960590 T G ADK Missense_Mutation p.L45R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 76158226 76158226 T C ADK Intron 0.20 TCGA-EE-A2GC-06 10 76797602 76797602 C T DUPD1 Missense_Mutation p.E219K 0.48 tolerated_low_confidence(0.11) benign(0) TCGA-EE-A2GC-06 10 76857511 76857511 G A DUSP13 Silent p.N94N 0.16 TCGA-EE-A2GC-06 10 7745353 7745353 C T ITIH2 5'UTR 0.47 TCGA-EE-A2GC-06 10 7866325 7866325 C T TAF3 Nonsense_Mutation p.Q71* 0.21 TCGA-EE-A2GC-06 10 82185750 82185750 C T FAM213A Silent p.F133F 0.19 TCGA-EE-A2GC-06 10 83635816 83635816 C T NRG3 Silent p.P240P 0.69 TCGA-EE-A2GC-06 10 86131045 86131045 C T CCSER2 Silent p.V79V 0.30 TCGA-EE-A2GC-06 10 90582746 90582746 C T ANKRD22 Silent p.R176R 0.46 TCGA-EE-A2GC-06 10 91162436 91162436 G A IFIT1 Missense_Mutation p.R135K 0.17 tolerated(0.71) benign(0.05) TCGA-EE-A2GC-06 10 93770907 93770907 G A BTAF1 Missense_Mutation p.R1394K 0.19 tolerated(0.64) benign(0.003) TCGA-EE-A2GC-06 10 94715422 94715422 C T EXOC6 Missense_Mutation p.S575F 0.44 tolerated(0.21) benign(0.102) TCGA-EE-A2GC-06 10 94733941 94733941 C T EXOC6 Silent p.D635D 0.19 TCGA-EE-A2GC-06 10 95076571 95076571 C T MYOF Splice_Site p.X1867_splice 0.25 TCGA-EE-A2GC-06 10 95191274 95191274 C T MYOF Splice_Site p.X79_splice 0.29 TCGA-EE-A2GC-06 10 95335855 95335855 C T FFAR4 Missense_Mutation p.S192L 0.43 tolerated(0.67) benign(0.002) TCGA-EE-A2GC-06 10 95372708 95372708 C T PDE6C Missense_Mutation p.P76S 0.15 tolerated(0.8) benign(0.045) TCGA-EE-A2GC-06 10 95372709 95372709 C T PDE6C Missense_Mutation p.P76L 0.15 tolerated(0.31) benign(0.002) TCGA-EE-A2GC-06 10 95400746 95400746 G A PDE6C Missense_Mutation p.D603N 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 95721216 95721216 A C PIPSL RNA 0.17 TCGA-EE-A2GC-06 10 96443493 96443493 G A CYP2C18 5'UTR 0.39 TCGA-EE-A2GC-06 10 96448013 96448013 G A CYP2C18 Missense_Mutation p.E155K 0.20 deleterious(0.04) probably_damaging(0.969) TCGA-EE-A2GC-06 10 96448017 96448017 T G CYP2C18 Missense_Mutation p.L156W 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 10 96484201 96484201 G A CYP2C18 Missense_Mutation p.E354K 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 96535268 96535268 C T CYP2C19 Silent p.C151C 0.44 TCGA-EE-A2GC-06 10 96829221 96829221 C T CYP2C8 5'UTR 0.49 TCGA-EE-A2GC-06 10 96967153 96967153 G A C10orf129 Missense_Mutation p.D198N 0.41 tolerated(1) benign(0.026) TCGA-EE-A2GC-06 10 97599452 97599452 G A ENTPD1 Missense_Mutation p.G62E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 10 97983604 97983604 G A BLNK Missense_Mutation p.P168L 0.16 deleterious(0) benign(0.21) TCGA-EE-A2GC-06 10 98146728 98146728 C T TLL2 Missense_Mutation p.D612N 0.45 tolerated(0.08) possibly_damaging(0.487) TCGA-EE-A2GC-06 10 98325103 98325103 G A TM9SF3 Missense_Mutation p.H127Y 0.22 tolerated(0.05) benign(0.049) TCGA-EE-A2GC-06 10 98743264 98743264 C T C10orf12 Missense_Mutation p.S706L 0.44 tolerated(0.1) benign(0.123) TCGA-EE-A2GC-06 10 98807584 98807584 C T SLIT1 Silent p.E499E 0.32 TCGA-EE-A2GC-06 10 98819885 98819885 G A SLIT1 Silent p.I324I 0.44 TCGA-EE-A2GC-06 10 99052382 99052382 C A ARHGAP19 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.257) TCGA-EE-A2GC-06 11 100999728 100999728 G A PGR Missense_Mutation p.S25F 0.72 deleterious_low_confidence(0) benign(0.202) TCGA-EE-A2GC-06 11 100999743 100999743 G A PGR Missense_Mutation p.S20F 0.71 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A2GC-06 11 102575304 102575304 G A MMP27 Missense_Mutation p.T102I 0.49 deleterious(0.04) benign(0.044) TCGA-EE-A2GC-06 11 10585563 10585563 C T LYVE1 Silent p.G107G 0.50 TCGA-EE-A2GC-06 11 10773005 10773005 G T CTR9 Splice_Site p.X15_splice 0.45 TCGA-EE-A2GC-06 11 1093781 1093781 C T MUC2 Missense_Mutation p.S1867F 0.22 unknown(0) TCGA-EE-A2GC-06 11 110450329 110450329 G A ARHGAP20 Missense_Mutation p.P1114L 0.62 deleterious_low_confidence(0.01) benign(0.147) TCGA-EE-A2GC-06 11 111156661 111156661 T A C11orf53 Missense_Mutation p.V198E 0.69 tolerated(0.08) benign(0.376) TCGA-EE-A2GC-06 11 113631062 113631062 G A ZW10 Missense_Mutation p.S150F 0.60 deleterious(0.04) benign(0.367) TCGA-EE-A2GC-06 11 113816638 113816638 G A HTR3B Missense_Mutation p.G369R 0.22 tolerated(0.61) benign(0.002) TCGA-EE-A2GC-06 11 113816639 113816639 G A HTR3B Missense_Mutation p.G369E 0.24 tolerated(0.91) benign(0.002) TCGA-EE-A2GC-06 11 114183152 114183152 G A NNMT Missense_Mutation p.E250K 0.63 tolerated(0.46) benign(0.007) TCGA-EE-A2GC-06 11 114442193 114442193 G A NXPE4 Silent p.L368L 0.62 TCGA-EE-A2GC-06 11 114450906 114450906 C T NXPE4 Missense_Mutation p.M349I 0.58 tolerated(0.2) benign(0.01) TCGA-EE-A2GC-06 11 114453477 114453477 C T NXPE4 Silent p.L121L 0.52 TCGA-EE-A2GC-06 11 116633647 116633647 G A BUD13 Missense_Mutation p.H220Y 0.62 tolerated(0.09) benign(0.023) TCGA-EE-A2GC-06 11 117034544 117034544 G C PAFAH1B2 Missense_Mutation p.G116A 0.50 tolerated(0.16) benign(0.049) TCGA-EE-A2GC-06 11 118344458 118344458 C T KMT2A Nonsense_Mutation p.R862* 0.47 TCGA-EE-A2GC-06 11 118366446 118366446 C T KMT2A Missense_Mutation p.P1799S 0.58 probably_damaging(0.998) TCGA-EE-A2GC-06 11 118851203 118851203 G A FOXR1 Silent p.K205K 0.53 TCGA-EE-A2GC-06 11 119549141 119549141 G A PVRL1 Silent p.L138L 0.57 TCGA-EE-A2GC-06 11 11986121 11986121 C T DKK3 Missense_Mutation p.E315K 0.47 tolerated_low_confidence(0.25) benign(0.01) TCGA-EE-A2GC-06 11 120331436 120331436 C T ARHGEF12 Silent p.I861I 0.66 TCGA-EE-A2GC-06 11 1213482 1213482 G A MUC5AC RNA 0.09 TCGA-EE-A2GC-06 11 121425922 121425922 G A SORL1 Silent p.G822G 0.54 TCGA-EE-A2GC-06 11 121477932 121477932 C T SORL1 Missense_Mutation p.S1700F 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 11 121986447 121986447 C T BLID Missense_Mutation p.E62K 0.58 deleterious_low_confidence(0.02) benign(0.025) TCGA-EE-A2GC-06 11 12270770 12270770 C T MICAL2 Missense_Mutation p.H942Y 0.46 tolerated(0.39) benign(0) TCGA-EE-A2GC-06 11 123600426 123600426 G A ZNF202 Silent p.T170T 0.64 TCGA-EE-A2GC-06 11 123886634 123886634 C T OR10G4 Missense_Mutation p.S118F 0.16 deleterious(0) possibly_damaging(0.759) TCGA-EE-A2GC-06 11 123894072 123894072 C T OR10G9 Missense_Mutation p.S118F 0.44 deleterious(0) possibly_damaging(0.759) TCGA-EE-A2GC-06 11 124189931 124189931 G A OR8D2 Missense_Mutation p.L55F 0.59 deleterious(0.01) possibly_damaging(0.844) TCGA-EE-A2GC-06 11 124189932 124189932 T A OR8D2 Missense_Mutation p.Q54H 0.58 tolerated(1) benign(0.002) TCGA-EE-A2GC-06 11 124252876 124252876 G A OR8B2 Missense_Mutation p.R122C 0.60 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 11 124294171 124294171 G A OR8B4 Silent p.F199F 0.42 TCGA-EE-A2GC-06 11 124440061 124440061 G A OR8A1 Missense_Mutation p.G33S 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 11 128781825 128781825 C T KCNJ5 Silent p.F219F 0.48 TCGA-EE-A2GC-06 11 12901314 12901314 C T TEAD1 Silent p.I130I 0.37 TCGA-EE-A2GC-06 11 130785160 130785160 G A SNX19 Silent p.P225P 0.59 TCGA-EE-A2GC-06 11 130785161 130785161 G A SNX19 Missense_Mutation p.P225L 0.59 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A2GC-06 11 134027867 134027867 G A NCAPD3 Missense_Mutation p.P1377L 0.58 tolerated(0.19) benign(0.027) TCGA-EE-A2GC-06 11 13407317 13407317 T C ARNTL Missense_Mutation p.S566P 0.33 tolerated(0.37) benign(0.012) TCGA-EE-A2GC-06 11 15170714 15170714 G A INSC Silent p.G45G 0.16 TCGA-EE-A2GC-06 11 1651372 1651372 C T KRTAP5-5 Missense_Mutation p.S101F 0.42 unknown(0) TCGA-EE-A2GC-06 11 16760249 16760249 G T C11orf58 5'UTR 0.35 TCGA-EE-A2GC-06 11 16838383 16838383 C T PLEKHA7 Silent p.G610G 0.15 TCGA-EE-A2GC-06 11 16838578 16838578 G A PLEKHA7 Silent p.S545S 0.46 TCGA-EE-A2GC-06 11 17452338 17452338 C T ABCC8 Intron 0.34 TCGA-EE-A2GC-06 11 17452339 17452339 C T ABCC8 Intron 0.34 TCGA-EE-A2GC-06 11 18739491 18739491 C T IGSF22 Silent p.E320E 0.16 TCGA-EE-A2GC-06 11 18754142 18754142 G A PTPN5 Silent p.L442L 0.17 TCGA-EE-A2GC-06 11 18754872 18754872 G A PTPN5 Silent p.I376I 0.31 TCGA-EE-A2GC-06 11 193726 193726 G A SCGB1C1 Missense_Mutation p.E24K 0.29 deleterious(0.03) benign(0.197) TCGA-EE-A2GC-06 11 1950358 1950358 G A TNNT3 Missense_Mutation p.E31K 0.37 tolerated(0.31) unknown(0) TCGA-EE-A2GC-06 11 20424497 20424497 C T PRMT3 Silent p.F246F 0.20 TCGA-EE-A2GC-06 11 20649547 20649547 C T SLC6A5 Nonsense_Mutation p.Q473* 0.14 TCGA-EE-A2GC-06 11 20673986 20673986 C T SLC6A5 Missense_Mutation p.P741L 0.35 deleterious(0.01) benign(0.025) TCGA-EE-A2GC-06 11 22248924 22248924 T G ANO5 Missense_Mutation p.L147W 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 11 24753697 24753697 G A LUZP2 Missense_Mutation p.D72N 0.24 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A2GC-06 11 26582726 26582726 C T MUC15 Silent p.G324G 0.43 TCGA-EE-A2GC-06 11 26582728 26582728 C T MUC15 Missense_Mutation p.G324R 0.22 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 11 26734223 26734223 G A SLC5A12 Missense_Mutation p.R124C 0.42 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 11 2869239 2869239 G A KCNQ1 3'UTR 0.37 TCGA-EE-A2GC-06 11 3062193 3062193 C T CARS Missense_Mutation p.G130R 0.24 deleterious(0.02) possibly_damaging(0.464) TCGA-EE-A2GC-06 11 32456300 32456300 T A WT1 Missense_Mutation p.N198Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EE-A2GC-06 11 32460385 32460385 G A WT1 5'Flank 0.54 TCGA-EE-A2GC-06 11 3380722 3380722 A C ZNF195 Missense_Mutation p.L506V 0.35 tolerated(0.21) benign(0.003) TCGA-EE-A2GC-06 11 33886333 33886333 G A LMO2 Silent p.P93P 0.28 TCGA-EE-A2GC-06 11 34112119 34112119 C T CAPRIN1 Missense_Mutation p.S483F 0.24 deleterious(0.03) possibly_damaging(0.83) TCGA-EE-A2GC-06 11 34149087 34149087 C T NAT10 Silent p.L395L 0.18 TCGA-EE-A2GC-06 11 34161016 34161016 G A NAT10 Missense_Mutation p.R798K 0.21 tolerated(1) benign(0.001) TCGA-EE-A2GC-06 11 34470872 34470872 A T CAT Missense_Mutation p.E67V 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 11 34470873 34470873 G A CAT Silent p.E67E 0.32 TCGA-EE-A2GC-06 11 35198190 35198190 C T CD44 Missense_Mutation p.R46W 0.23 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GC-06 11 36514136 36514136 G A TRAF6 Missense_Mutation p.P241S 0.16 tolerated(0.23) possibly_damaging(0.887) TCGA-EE-A2GC-06 11 40136877 40136877 C T LRRC4C Silent p.S322S 0.52 TCGA-EE-A2GC-06 11 4389234 4389234 G A OR52B4 Missense_Mutation p.R98C 0.18 tolerated(0.15) benign(0.002) TCGA-EE-A2GC-06 11 45117337 45117337 G A PRDM11 5'UTR 0.77 TCGA-EE-A2GC-06 11 4615877 4615877 T A OR52I1 Missense_Mutation p.S203R 0.14 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2GC-06 11 46341910 46341910 G A CREB3L1 Missense_Mutation p.E452K 0.29 deleterious(0.01) benign(0.146) TCGA-EE-A2GC-06 11 4661336 4661336 G A OR51D1 Missense_Mutation p.E106K 0.35 tolerated(0.05) benign(0.001) TCGA-EE-A2GC-06 11 4674057 4674057 C T OR51E1 Silent p.L101L 0.36 TCGA-EE-A2GC-06 11 48149502 48149502 C T PTPRJ Missense_Mutation p.P422S 0.36 tolerated(0.32) benign(0.001) TCGA-EE-A2GC-06 11 4870198 4870198 A T OR51S1 Missense_Mutation p.L81M 0.36 tolerated(0.18) probably_damaging(1) TCGA-EE-A2GC-06 11 4903607 4903607 C T OR51T1 Missense_Mutation p.P187S 0.16 deleterious(0.01) benign(0.034) TCGA-EE-A2GC-06 11 49598204 49598204 C T RP11-707M1.1 RNA 0.45 TCGA-EE-A2GC-06 11 49974126 49974126 C T OR4C13 Missense_Mutation p.P51L 0.24 deleterious_low_confidence(0.02) benign(0.031) TCGA-EE-A2GC-06 11 50003782 50003782 C T OR4C12 Missense_Mutation p.E86K 0.39 tolerated_low_confidence(0.12) benign(0.008) TCGA-EE-A2GC-06 11 5020453 5020453 C T OR51L1 Missense_Mutation p.P81S 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GC-06 11 5153532 5153532 G A OR52A5 Missense_Mutation p.S114L 0.38 deleterious(0) benign(0.165) TCGA-EE-A2GC-06 11 5290736 5290736 T C HBE1 Missense_Mutation p.K88R 0.40 tolerated(0.07) benign(0.151) TCGA-EE-A2GC-06 11 533352 533352 G A HRAS Intron 0.30 TCGA-EE-A2GC-06 11 5364678 5364678 G A OR51B5 Missense_Mutation p.S26F 0.33 deleterious(0.05) benign(0.077) TCGA-EE-A2GC-06 11 5364700 5364700 C T OR51B5 Missense_Mutation p.E19K 0.39 deleterious(0.01) possibly_damaging(0.45) TCGA-EE-A2GC-06 11 5364701 5364701 C T OR51B5 Silent p.L18L 0.39 TCGA-EE-A2GC-06 11 5462089 5462089 G A OR51I1 Missense_Mutation p.S219F 0.45 deleterious(0) possibly_damaging(0.739) TCGA-EE-A2GC-06 11 5462353 5462353 G A OR51I1 Missense_Mutation p.P131L 0.34 deleterious(0) benign(0.025) TCGA-EE-A2GC-06 11 5474883 5474883 C T OR51I2 Silent p.L55L 0.38 TCGA-EE-A2GC-06 11 5474973 5474973 C T OR51I2 Silent p.F85F 0.20 TCGA-EE-A2GC-06 11 5475610 5475610 G A OR51I2 Missense_Mutation p.E298K 0.33 deleterious(0.03) benign(0.242) TCGA-EE-A2GC-06 11 55135551 55135551 G A OR4A15 Missense_Mutation p.M64I 0.44 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GC-06 11 55340347 55340347 C T OR4C16 Silent p.F248F 0.53 TCGA-EE-A2GC-06 11 5537589 5537589 G A UBQLNL Missense_Mutation p.S28L 0.35 tolerated(0.4) benign(0.007) TCGA-EE-A2GC-06 11 55433486 55433486 C T OR4C6 Missense_Mutation p.P282S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.45) TCGA-EE-A2GC-06 11 55563721 55563721 C T OR5D14 Silent p.I230I 0.18 TCGA-EE-A2GC-06 11 55606440 55606440 G A OR5D16 Silent p.V71V 0.24 TCGA-EE-A2GC-06 11 55761697 55761697 G A OR5F1 Silent p.I135I 0.39 TCGA-EE-A2GC-06 11 55797987 55797987 C T OR5AS1 Silent p.F31F 0.14 TCGA-EE-A2GC-06 11 55798846 55798846 C T OR5AS1 Missense_Mutation p.R318C 0.40 deleterious(0) benign(0.002) TCGA-EE-A2GC-06 11 55889898 55889898 G A OR8H3 Missense_Mutation p.G17E 0.41 deleterious(0) possibly_damaging(0.799) TCGA-EE-A2GC-06 11 55890323 55890323 A C OR8H3 Missense_Mutation p.N159H 0.41 tolerated(0.62) benign(0.178) TCGA-EE-A2GC-06 11 56057983 56057983 G A OR8H1 Silent p.L186L 0.16 TCGA-EE-A2GC-06 11 56086403 56086403 G A OR8K3 Silent p.L207L 0.28 TCGA-EE-A2GC-06 11 56086643 56086643 G A OR8K3 Silent p.L287L 0.27 TCGA-EE-A2GC-06 11 56184863 56184863 G A OR5R1 Silent p.I282I 0.43 TCGA-EE-A2GC-06 11 56237350 56237350 G A OR5M3 Silent p.S208S 0.48 TCGA-EE-A2GC-06 11 56310287 56310287 G A OR5M11 Silent p.V149V 0.37 TCGA-EE-A2GC-06 11 56409859 56409859 G A OR5AP2 Silent p.L19L 0.18 TCGA-EE-A2GC-06 11 56510593 56510593 G A OR9G4 Missense_Mutation p.S232F 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 11 56510657 56510657 C T OR9G4 Missense_Mutation p.E211K 0.23 deleterious(0.05) possibly_damaging(0.689) TCGA-EE-A2GC-06 11 56756815 56756815 C T OR5AK2 Missense_Mutation p.R143C 0.43 tolerated(0.22) possibly_damaging(0.601) TCGA-EE-A2GC-06 11 56756910 56756910 C T OR5AK2 Silent p.I174I 0.45 TCGA-EE-A2GC-06 11 56954940 56954940 G A LRRC55 Missense_Mutation p.E338K 0.29 tolerated(0.12) benign(0.291) TCGA-EE-A2GC-06 11 57147044 57147044 C T PRG3 Missense_Mutation p.E100K 0.23 tolerated(0.6) benign(0.004) TCGA-EE-A2GC-06 11 57311208 57311208 G A SMTNL1 Missense_Mutation p.E300K 0.36 deleterious(0.03) benign(0.21) TCGA-EE-A2GC-06 11 57335133 57335133 C T UBE2L6 5'UTR 0.28 TCGA-EE-A2GC-06 11 58190091 58190091 G A OR5B2 Missense_Mutation p.S215F 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GC-06 11 58275543 58275543 G A OR5B21 Silent p.L12L 0.31 TCGA-EE-A2GC-06 11 58338113 58338113 G A LPXN Silent p.P34P 0.25 TCGA-EE-A2GC-06 11 5841972 5841972 C T OR52N2 Missense_Mutation p.T136I 0.43 deleterious(0.01) benign(0.03) TCGA-EE-A2GC-06 11 59210722 59210722 G A OR5A1 Silent p.Q27Q 0.53 TCGA-EE-A2GC-06 11 59210723 59210723 G A OR5A1 Missense_Mutation p.A28T 0.53 tolerated(0.14) benign(0.001) TCGA-EE-A2GC-06 11 59271968 59271968 C T OR4D11 Missense_Mutation p.P307L 0.34 tolerated(0.72) benign(0.011) TCGA-EE-A2GC-06 11 59283314 59283314 G A OR4D9 Missense_Mutation p.R310K 0.27 tolerated(0.77) benign(0.003) TCGA-EE-A2GC-06 11 59345628 59345628 G A OSBP Missense_Mutation p.P685L 0.26 tolerated(0.12) possibly_damaging(0.843) TCGA-EE-A2GC-06 11 59423511 59423511 G A PATL1 Missense_Mutation p.S244F 0.25 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A2GC-06 11 5968909 5968909 C T OR56A3 Silent p.F111F 0.38 TCGA-EE-A2GC-06 11 60150751 60150751 C T MS4A7 Missense_Mutation p.T46I 0.41 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2GC-06 11 60183946 60183946 C T MS4A14 Missense_Mutation p.S535F 0.19 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GC-06 11 6023726 6023726 G A OR56A4 Missense_Mutation p.S218F 0.54 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A2GC-06 11 60714282 60714282 G A SLC15A3 Silent p.L190L 0.46 TCGA-EE-A2GC-06 11 607720 607720 C T PHRF1 Missense_Mutation p.S754F 0.33 tolerated(0.47) benign(0.331) TCGA-EE-A2GC-06 11 6129062 6129062 C T OR56B4 Silent p.F18F 0.33 TCGA-EE-A2GC-06 11 6190816 6190816 G A OR52B2 Silent p.L247L 0.38 TCGA-EE-A2GC-06 11 6191050 6191050 G A OR52B2 Silent p.P169P 0.27 TCGA-EE-A2GC-06 11 62287735 62287735 G A AHNAK Silent p.A4718A 0.23 TCGA-EE-A2GC-06 11 62415653 62415653 G A INTS5 Silent p.P633P 0.21 TCGA-EE-A2GC-06 11 64037604 64037604 G A BAD 3'UTR 0.40 TCGA-EE-A2GC-06 11 64111332 64111332 G A CCDC88B Silent p.E467E 0.14 TCGA-EE-A2GC-06 11 64367185 64367185 G A SLC22A12 Missense_Mutation p.D370N 0.18 tolerated(0.06) benign(0.198) TCGA-EE-A2GC-06 11 6462171 6462171 G A HPX Missense_Mutation p.P8L 0.21 tolerated_low_confidence(0.55) benign(0.002) TCGA-EE-A2GC-06 11 64622204 64622204 G A EHD1 Silent p.S402S 0.10 TCGA-EE-A2GC-06 11 64695292 64695292 C T PPP2R5B Missense_Mutation p.R139W 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 11 65049962 65049962 C T POLA2 Missense_Mutation p.P326S 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 11 65124003 65124003 C T TIGD3 Missense_Mutation p.P242S 0.48 tolerated(0.27) possibly_damaging(0.83) TCGA-EE-A2GC-06 11 65168246 65168246 C T FRMD8 Missense_Mutation p.P327S 0.51 tolerated(0.09) benign(0.049) TCGA-EE-A2GC-06 11 65637595 65637595 C G EFEMP2 Missense_Mutation p.V202L 0.28 tolerated(0.22) benign(0.072) TCGA-EE-A2GC-06 11 65771248 65771248 C T BANF1 3'UTR 0.59 TCGA-EE-A2GC-06 11 65819988 65819988 G A SF3B2 Missense_Mutation p.G45S 0.44 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EE-A2GC-06 11 65988193 65988193 A G PACS1 Missense_Mutation p.N377S 0.20 deleterious(0.04) probably_damaging(0.952) TCGA-EE-A2GC-06 11 66006656 66006656 C T PACS1 Silent p.S779S 0.47 TCGA-EE-A2GC-06 11 66373037 66373037 C T CCS Silent p.S215S 0.46 TCGA-EE-A2GC-06 11 6651133 6651133 G A DCHS1 Missense_Mutation p.S1602F 0.17 tolerated(0.07) benign(0.191) TCGA-EE-A2GC-06 11 6655412 6655412 G A DCHS1 Silent p.T641T 0.32 TCGA-EE-A2GC-06 11 67052417 67052417 C T ADRBK1 Missense_Mutation p.P585L 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 11 67052452 67052452 C T ADRBK1 Missense_Mutation p.P597S 0.29 tolerated_low_confidence(0.5) benign(0.006) TCGA-EE-A2GC-06 11 67434452 67434452 A G ALDH3B2 5'UTR 0.28 TCGA-EE-A2GC-06 11 68475660 68475660 G A MTL5 3'UTR 0.44 TCGA-EE-A2GC-06 11 68671332 68671332 G A IGHMBP2 5'UTR 0.22 TCGA-EE-A2GC-06 11 6912877 6912877 G A OR2D2 Silent p.P285P 0.38 TCGA-EE-A2GC-06 11 69625419 69625419 C G FGF3 Missense_Mutation p.G125A 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 11 69625426 69625426 C T FGF3 Missense_Mutation p.E123K 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 11 6977310 6977310 C T ZNF215 Nonsense_Mutation p.R368* 0.20 TCGA-EE-A2GC-06 11 69972233 69972233 C A ANO1 Silent p.I343I 0.58 TCGA-EE-A2GC-06 11 69972234 69972234 C T ANO1 Missense_Mutation p.P344S 0.57 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2GC-06 11 7022720 7022720 G A ZNF214 Missense_Mutation p.S65F 0.17 tolerated(0.27) benign(0.234) TCGA-EE-A2GC-06 11 7059824 7059824 G A NLRP14 Missense_Mutation p.D3N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-EE-A2GC-06 11 7070991 7070991 G A NLRP14 Missense_Mutation p.G738E 0.31 tolerated(0.42) benign(0.044) TCGA-EE-A2GC-06 11 71721864 71721864 G A NUMA1 Nonsense_Mutation p.Q1563* 0.14 TCGA-EE-A2GC-06 11 71903380 71903380 G A FOLR1 Missense_Mutation p.E55K 0.20 tolerated(0.72) benign(0.012) TCGA-EE-A2GC-06 11 72946081 72946081 C T P2RY2 Missense_Mutation p.P293S 0.62 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GC-06 11 74053589 74053589 G A PGM2L1 Missense_Mutation p.P517S 0.66 deleterious(0.02) benign(0.066) TCGA-EE-A2GC-06 11 74913986 74913986 C T SLCO2B1 Nonsense_Mutation p.Q602* 0.50 TCGA-EE-A2GC-06 11 74914466 74914466 G A SLCO2B1 Missense_Mutation p.R648Q 0.72 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 11 75152223 75152223 G A GDPD5 Silent p.S486S 0.66 TCGA-EE-A2GC-06 11 7530740 7530740 T A OLFML1 Nonsense_Mutation p.L177* 0.34 TCGA-EE-A2GC-06 11 7817686 7817686 C T OR5P2 Silent p.K268K 0.26 TCGA-EE-A2GC-06 11 78419459 78419459 C T TENM4 Missense_Mutation p.D1386N 0.72 tolerated(0.05) benign(0.342) TCGA-EE-A2GC-06 11 7846917 7846917 G A OR5P3 Silent p.I201I 0.36 TCGA-EE-A2GC-06 11 7981544 7981544 G A NLRP10 Missense_Mutation p.P539S 0.25 tolerated(0.27) benign(0.232) TCGA-EE-A2GC-06 11 7981739 7981739 G A NLRP10 Missense_Mutation p.H474Y 0.40 tolerated(0.72) benign(0.001) TCGA-EE-A2GC-06 11 7981952 7981952 C T NLRP10 Missense_Mutation p.E403K 0.32 tolerated(0.27) benign(0.006) TCGA-EE-A2GC-06 11 8486369 8486369 C T STK33 Missense_Mutation p.E114K 0.46 tolerated(0.2) benign(0.024) TCGA-EE-A2GC-06 11 85396406 85396406 G A CCDC89 Silent p.S256S 0.66 TCGA-EE-A2GC-06 11 92533956 92533956 G A FAT3 Missense_Mutation p.E2593K 0.59 possibly_damaging(0.887) TCGA-EE-A2GC-06 11 92565152 92565152 G A FAT3 Silent p.G3282G 0.18 TCGA-EE-A2GC-06 12 100441971 100441971 G A UHRF1BP1L Missense_Mutation p.S1241F 0.18 deleterious(0.04) benign(0.027) TCGA-EE-A2GC-06 12 101577958 101577958 C T SLC5A8 Missense_Mutation p.G336R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 101876674 101876674 A G SPIC Silent p.G105G 0.35 TCGA-EE-A2GC-06 12 102054987 102054987 G A MYBPC1 Nonsense_Mutation p.W635* 0.32 TCGA-EE-A2GC-06 12 10313505 10313505 C T OLR1 Nonsense_Mutation p.W148* 0.35 TCGA-EE-A2GC-06 12 104046444 104046444 C T STAB2 Silent p.T456T 0.29 TCGA-EE-A2GC-06 12 104157375 104157375 G A STAB2 Missense_Mutation p.D2532N 0.31 deleterious(0.04) benign(0.03) TCGA-EE-A2GC-06 12 104408855 104408855 G A GLT8D2 Silent p.I16I 0.31 TCGA-EE-A2GC-06 12 105464556 105464556 G A ALDH1L2 Missense_Mutation p.P74S 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.513) TCGA-EE-A2GC-06 12 105600949 105600949 G C APPL2 Missense_Mutation p.R177G 0.36 deleterious(0) probably_damaging(0.958) TCGA-EE-A2GC-06 12 108685807 108685807 C T CMKLR1 Missense_Mutation p.M311I 0.17 tolerated(0.18) benign(0.006) TCGA-EE-A2GC-06 12 109284019 109284019 G A DAO Missense_Mutation p.G141E 0.39 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GC-06 12 110238505 110238505 G A TRPV4 Silent p.L257L 0.44 TCGA-EE-A2GC-06 12 112506773 112506773 G A NAA25 Nonsense_Mutation p.Q354* 0.37 TCGA-EE-A2GC-06 12 112516049 112516049 G A NAA25 Silent p.L203L 0.35 TCGA-EE-A2GC-06 12 112622317 112622317 C T HECTD4 Missense_Mutation p.A3339T 0.26 benign(0.035) TCGA-EE-A2GC-06 12 11339232 11339232 G A TAS2R42 Silent p.S104S 0.38 TCGA-EE-A2GC-06 12 1137460 1137460 C T ERC1 Missense_Mutation p.P131S 0.28 tolerated(0.56) benign(0.013) TCGA-EE-A2GC-06 12 113758889 113758889 G A SLC8B1 Silent p.L112L 0.41 TCGA-EE-A2GC-06 12 114793500 114793500 G A TBX5 Missense_Mutation p.P465L 0.34 deleterious(0) benign(0.058) TCGA-EE-A2GC-06 12 114803958 114803958 G A TBX5 Intron 0.36 TCGA-EE-A2GC-06 12 11546714 11546714 C T PRB2 Missense_Mutation p.G100R 0.19 deleterious(0.01) unknown(0) TCGA-EE-A2GC-06 12 117013840 117013840 C T MAP1LC3B2 Silent p.I31I 0.29 TCGA-EE-A2GC-06 12 117705869 117705869 G A NOS1 Silent p.I640I 0.23 TCGA-EE-A2GC-06 12 118582672 118582672 G A PEBP1 3'UTR 0.18 TCGA-EE-A2GC-06 12 119968818 119968818 G A CCDC60 Missense_Mutation p.D501N 0.42 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A2GC-06 12 123102893 123102893 C T KNTC1 Missense_Mutation p.P2012S 0.32 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A2GC-06 12 12483519 12483519 G A MANSC1 Silent p.T246T 0.29 TCGA-EE-A2GC-06 12 124968247 124968247 G A NCOR2 Silent p.F102F 0.27 TCGA-EE-A2GC-06 12 126138808 126138808 G A TMEM132B Missense_Mutation p.R930K 0.37 tolerated(0.16) possibly_damaging(0.599) TCGA-EE-A2GC-06 12 129558431 129558431 C T TMEM132D Missense_Mutation p.E1097K 0.33 deleterious(0) possibly_damaging(0.614) TCGA-EE-A2GC-06 12 129558659 129558659 C T TMEM132D Missense_Mutation p.G1021R 0.17 tolerated(0.09) benign(0.287) TCGA-EE-A2GC-06 12 130830393 130830393 A C PIWIL1 Missense_Mutation p.N96H 0.33 tolerated(0.16) possibly_damaging(0.447) TCGA-EE-A2GC-06 12 130883636 130883636 C T RIMBP2 3'UTR 0.37 TCGA-EE-A2GC-06 12 13232794 13232794 C T KIAA1467 Missense_Mutation p.P572S 0.35 tolerated(0.06) benign(0.058) TCGA-EE-A2GC-06 12 132529467 132529467 G A EP400 Silent p.K2251K 0.38 TCGA-EE-A2GC-06 12 133236096 133236096 C T POLE Splice_Site p.X1021_splice 0.41 TCGA-EE-A2GC-06 12 13367509 13367509 T A EMP1 Missense_Mutation p.Y120N 0.38 tolerated(0.18) probably_damaging(0.958) TCGA-EE-A2GC-06 12 14689571 14689571 G A PLBD1 Missense_Mutation p.P211L 0.32 deleterious(0.05) benign(0.01) TCGA-EE-A2GC-06 12 14809543 14809543 C T GUCY2C Missense_Mutation p.R458K 0.44 tolerated(0.91) benign(0.007) TCGA-EE-A2GC-06 12 18573894 18573894 C T PIK3C2G Missense_Mutation p.R738C 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 18891712 18891712 G A CAPZA3 Nonsense_Mutation p.W170* 0.33 TCGA-EE-A2GC-06 12 2027550 2027550 G T CACNA2D4 Silent p.S30S 0.32 TCGA-EE-A2GC-06 12 20852565 20852565 C T SLCO1C1 Missense_Mutation p.P19S 0.28 tolerated_low_confidence(0.06) benign(0.006) TCGA-EE-A2GC-06 12 21032513 21032513 C T SLCO1B3 Missense_Mutation p.P427S 0.35 tolerated(0.48) benign(0.006) TCGA-EE-A2GC-06 12 21069058 21069058 A C SLCO1B3 Missense_Mutation p.E662D 0.35 tolerated(0.42) benign(0.003) TCGA-EE-A2GC-06 12 21205097 21205097 G A SLCO1B7 Missense_Mutation p.E420K 0.30 tolerated(0.5) benign(0.012) TCGA-EE-A2GC-06 12 21727101 21727101 C T GYS2 Missense_Mutation p.D219N 0.30 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GC-06 12 22643080 22643080 G A C2CD5 Silent p.T445T 0.39 TCGA-EE-A2GC-06 12 25699394 25699394 C T IFLTD1 Silent p.K135K 0.37 TCGA-EE-A2GC-06 12 26749938 26749938 G A ITPR2 Silent p.L1378L 0.33 TCGA-EE-A2GC-06 12 2705123 2705123 C T CACNA1C Missense_Mutation p.S916F 0.32 deleterious(0.03) possibly_damaging(0.704) TCGA-EE-A2GC-06 12 27152555 27152555 G A TM7SF3 Missense_Mutation p.L101F 0.36 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2GC-06 12 2788663 2788663 G A CACNA1C Silent p.R1763R 0.31 TCGA-EE-A2GC-06 12 30863305 30863305 G A CAPRIN2 Missense_Mutation p.P922L 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 12 40078679 40078679 C T C12orf40 Missense_Mutation p.P433S 0.28 tolerated(0.2) benign(0.033) TCGA-EE-A2GC-06 12 40078685 40078685 G A C12orf40 Missense_Mutation p.E435K 0.30 tolerated(0.13) benign(0.187) TCGA-EE-A2GC-06 12 404774 404774 G A KDM5A Missense_Mutation p.P1474S 0.39 tolerated(0.52) benign(0.107) TCGA-EE-A2GC-06 12 40697974 40697974 G A LRRK2 Intron 0.25 TCGA-EE-A2GC-06 12 41957359 41957359 G A PDZRN4 Missense_Mutation p.E459K 0.33 tolerated(0.18) possibly_damaging(0.519) TCGA-EE-A2GC-06 12 42481745 42481745 G A GXYLT1 Missense_Mutation p.S389F 0.34 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A2GC-06 12 43750291 43750291 G A ADAMTS20 Missense_Mutation p.S1880L 0.43 deleterious(0.04) probably_damaging(0.923) TCGA-EE-A2GC-06 12 43769915 43769915 C T ADAMTS20 Missense_Mutation p.E1753K 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 12 4409108 4409108 G A CCND2 Missense_Mutation p.G268E 0.31 tolerated(1) benign(0.021) TCGA-EE-A2GC-06 12 44770492 44770492 C T TMEM117 Missense_Mutation p.R295C 0.40 tolerated(0.25) benign(0.191) TCGA-EE-A2GC-06 12 44782501 44782501 T A TMEM117 3'UTR 0.45 TCGA-EE-A2GC-06 12 4479808 4479808 G A FGF23 Missense_Mutation p.P153S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 12 45567772 45567772 G A PLEKHA8P1 RNA 0.36 TCGA-EE-A2GC-06 12 46320946 46320946 G A SCAF11 Silent p.S846S 0.30 TCGA-EE-A2GC-06 12 47629003 47629003 G A PCED1B Missense_Mutation p.E53K 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 12 48188615 48188615 G A HDAC7 Silent p.G462G 0.28 TCGA-EE-A2GC-06 12 48499242 48499242 G T SENP1 5'UTR 0.34 TCGA-EE-A2GC-06 12 48961685 48961685 G A LALBA 3'UTR 0.47 TCGA-EE-A2GC-06 12 49166193 49166193 C T ADCY6 Missense_Mutation p.R891K 0.40 tolerated(1) benign(0) TCGA-EE-A2GC-06 12 4920434 4920434 C T KCNA6 Silent p.I409I 0.42 TCGA-EE-A2GC-06 12 49421009 49421009 G A KMT2D Missense_Mutation p.P4914S 0.43 unknown(0) TCGA-EE-A2GC-06 12 50474934 50474934 G A ASIC1 Silent p.T495T 0.33 TCGA-EE-A2GC-06 12 51689613 51689613 G A BIN2 Missense_Mutation p.S243F 0.38 deleterious(0) possibly_damaging(0.823) TCGA-EE-A2GC-06 12 52283229 52283229 G A ANKRD33 Silent p.G200G 0.39 TCGA-EE-A2GC-06 12 52312866 52312866 C T ACVRL1 Silent p.T448T 0.33 TCGA-EE-A2GC-06 12 52314678 52314678 C T ACVRL1 3'UTR 0.25 TCGA-EE-A2GC-06 12 52385878 52385878 G A ACVR1B Intron 0.30 TCGA-EE-A2GC-06 12 53453118 53453118 G T TENC1 Missense_Mutation p.D575Y 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 54109721 54109721 G A CALCOCO1 Silent p.A372A 0.32 TCGA-EE-A2GC-06 12 54686323 54686323 C T NFE2 Silent p.L319L 0.37 TCGA-EE-A2GC-06 12 55039462 55039462 C T DCD Missense_Mutation p.E43K 0.34 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2GC-06 12 55523706 55523706 C T OR9K2 Missense_Mutation p.L52F 0.30 deleterious(0.02) benign(0.163) TCGA-EE-A2GC-06 12 55794506 55794506 C T OR6C65 Missense_Mutation p.S65F 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-EE-A2GC-06 12 55794584 55794584 C T OR6C65 Missense_Mutation p.S91F 0.35 deleterious_low_confidence(0.01) benign(0.111) TCGA-EE-A2GC-06 12 55846322 55846322 G A OR6C2 Missense_Mutation p.E109K 0.43 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-EE-A2GC-06 12 55945641 55945641 C T OR6C4 Silent p.L211L 0.41 TCGA-EE-A2GC-06 12 5603651 5603651 G A NTF3 Missense_Mutation p.E104K 0.36 tolerated(0.44) benign(0.015) TCGA-EE-A2GC-06 12 56349272 56349272 C T PMEL Missense_Mutation p.V580I 0.28 deleterious(0.04) benign(0.358) TCGA-EE-A2GC-06 12 56349273 56349273 C T PMEL Silent p.V579V 0.28 TCGA-EE-A2GC-06 12 56352320 56352320 C T PMEL Missense_Mutation p.G136R 0.45 tolerated(0.65) benign(0.03) TCGA-EE-A2GC-06 12 56862919 56862919 C T SPRYD4 Missense_Mutation p.P61L 0.34 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GC-06 12 56980652 56980652 C T RBMS2 Missense_Mutation p.P298L 0.35 tolerated(0.06) benign(0.36) TCGA-EE-A2GC-06 12 57111328 57111328 G A NACA Intron 0.37 TCGA-EE-A2GC-06 12 57111913 57111913 G A NACA Intron 0.37 TCGA-EE-A2GC-06 12 57111982 57111982 G A NACA Intron 0.37 TCGA-EE-A2GC-06 12 57346031 57346031 C T RDH16 Splice_Site p.X246_splice 0.44 TCGA-EE-A2GC-06 12 57431350 57431350 G A MYO1A Silent p.F679F 0.31 TCGA-EE-A2GC-06 12 57441875 57441875 T A MYO1A Missense_Mutation p.N43I 0.37 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2GC-06 12 5744347 5744347 C T ANO2 Missense_Mutation p.G596D 0.32 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2GC-06 12 57499302 57499302 C T STAT6 Missense_Mutation p.R254Q 0.28 tolerated(0.7) benign(0.011) TCGA-EE-A2GC-06 12 5756906 5756906 G A ANO2 Missense_Mutation p.S536F 0.35 tolerated(0.09) possibly_damaging(0.509) TCGA-EE-A2GC-06 12 57598190 57598190 C T LRP1 Intron 0.14 TCGA-EE-A2GC-06 12 57660556 57660556 G A R3HDM2 Missense_Mutation p.P683S 0.23 tolerated(0.71) benign(0.268) TCGA-EE-A2GC-06 12 57843515 57843515 C T INHBC Missense_Mutation p.R257C 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 12 57971793 57971793 C T KIF5A Missense_Mutation p.A788V 0.29 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2GC-06 12 58113910 58113910 C T OS9 Silent p.V543V 0.32 TCGA-EE-A2GC-06 12 58121399 58121399 G A AGAP2-AS1 Silent p.P208P 0.25 TCGA-EE-A2GC-06 12 6062751 6062751 C T VWF Missense_Mutation p.E2633K 0.29 tolerated(0.84) possibly_damaging(0.874) TCGA-EE-A2GC-06 12 6125984 6125984 G A VWF Silent p.F1702F 0.36 TCGA-EE-A2GC-06 12 6173516 6173516 G A VWF Missense_Mutation p.S443F 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 12 62104169 62104169 C T FAM19A2 3'UTR 0.25 TCGA-EE-A2GC-06 12 62147501 62147501 A G FAM19A2 Missense_Mutation p.C96R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 62261121 62261121 G T FAM19A2 Missense_Mutation p.S29Y 0.37 tolerated(0.29) benign(0.197) TCGA-EE-A2GC-06 12 64668746 64668746 C T C12orf56 Missense_Mutation p.G347R 0.29 tolerated(0.11) probably_damaging(0.994) TCGA-EE-A2GC-06 12 64828638 64828638 C T XPOT Silent p.F878F 0.33 TCGA-EE-A2GC-06 12 66152710 66152710 G A RPSAP52 RNA 0.40 TCGA-EE-A2GC-06 12 6692109 6692109 G A CHD4 Intron 0.38 TCGA-EE-A2GC-06 12 6752722 6752722 G A ACRBP Missense_Mutation p.L354F 0.38 tolerated(0.14) possibly_damaging(0.873) TCGA-EE-A2GC-06 12 6806600 6806600 C T PIANP Missense_Mutation p.G126R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EE-A2GC-06 12 69279631 69279631 T C CPM Missense_Mutation p.K67E 0.38 tolerated(0.79) benign(0.18) TCGA-EE-A2GC-06 12 70003895 70003895 C T LRRC10 Missense_Mutation p.E242K 0.39 tolerated(0.06) benign(0.219) TCGA-EE-A2GC-06 12 70194082 70194082 G A RAB3IP Missense_Mutation p.D344N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 70956662 70956662 C T PTPRB Missense_Mutation p.G1377E 0.31 deleterious(0.01) benign(0.422) TCGA-EE-A2GC-06 12 70956870 70956870 C T PTPRB Missense_Mutation p.D1308N 0.27 tolerated(1) benign(0.003) TCGA-EE-A2GC-06 12 7171668 7171668 C T C1S Silent p.F163F 0.41 TCGA-EE-A2GC-06 12 7172504 7172504 C T C1S Silent p.I206I 0.40 TCGA-EE-A2GC-06 12 71977724 71977724 T A LGR5 Missense_Mutation p.I645N 0.34 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2GC-06 12 72314523 72314523 G A TBC1D15 Missense_Mutation p.E555K 0.30 tolerated(0.49) benign(0.212) TCGA-EE-A2GC-06 12 7260858 7260858 C A C1RL Missense_Mutation p.D97Y 0.40 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GC-06 12 72956677 72956677 G A TRHDE Missense_Mutation p.M588I 0.20 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GC-06 12 7303190 7303190 C T CLSTN3 Missense_Mutation p.R766W 0.28 deleterious(0) possibly_damaging(0.582) TCGA-EE-A2GC-06 12 7463176 7463176 G A ACSM4 Missense_Mutation p.D152N 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 12 75434972 75434972 A G KCNC2 3'UTR 0.23 TCGA-EE-A2GC-06 12 7586282 7586282 C T CD163L1 Missense_Mutation p.D45N 0.41 tolerated(0.63) probably_damaging(0.977) TCGA-EE-A2GC-06 12 75895400 75895400 A G GLIPR1 3'UTR 0.45 TCGA-EE-A2GC-06 12 77417955 77417955 G A E2F7 Missense_Mutation p.P859L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 12 78513580 78513580 G A NAV3 Missense_Mutation p.E1202K 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A2GC-06 12 7869560 7869560 C T DPPA3 Intron 0.37 TCGA-EE-A2GC-06 12 7966892 7966892 G A SLC2A14 3'UTR 0.44 TCGA-EE-A2GC-06 12 80239088 80239088 G A PPP1R12A Missense_Mutation p.R161W 0.48 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 12 80647276 80647276 C T OTOGL Missense_Mutation p.S430F 0.36 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GC-06 12 80696435 80696435 G A OTOGL Missense_Mutation p.E1020K 0.33 tolerated(0.2) benign(0.234) TCGA-EE-A2GC-06 12 81613831 81613831 G A ACSS3 Missense_Mutation p.R497Q 0.28 deleterious(0.02) benign(0.253) TCGA-EE-A2GC-06 12 81734917 81734917 G A PPFIA2 Missense_Mutation p.T778I 0.45 deleterious(0.01) benign(0.205) TCGA-EE-A2GC-06 12 81751925 81751925 C T PPFIA2 Missense_Mutation p.R570K 0.22 tolerated(0.76) benign(0.006) TCGA-EE-A2GC-06 12 8245541 8245541 C T NECAP1 Missense_Mutation p.P189L 0.39 deleterious(0) benign(0.32) TCGA-EE-A2GC-06 12 8327868 8327868 G A ZNF705A Missense_Mutation p.G62R 0.22 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A2GC-06 12 8374817 8374817 T C FAM90A1 Silent p.Q332Q 0.24 TCGA-EE-A2GC-06 12 85431957 85431957 G A LRRIQ1 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) benign(0.107) TCGA-EE-A2GC-06 12 86199585 86199585 C T RASSF9 Missense_Mutation p.R68Q 0.26 tolerated(0.42) possibly_damaging(0.674) TCGA-EE-A2GC-06 12 8671664 8671664 C T CLEC4D Missense_Mutation p.P98S 0.35 tolerated(0.08) benign(0.099) TCGA-EE-A2GC-06 12 88390364 88390364 C T C12orf50 Missense_Mutation p.E117K 0.32 deleterious(0) possibly_damaging(0.631) TCGA-EE-A2GC-06 12 88391931 88391931 G A C12orf50 Missense_Mutation p.P57L 0.36 tolerated(0.23) benign(0.023) TCGA-EE-A2GC-06 12 88391963 88391963 G A C12orf50 Silent p.I46I 0.21 TCGA-EE-A2GC-06 12 88910131 88910131 G A KITLG Missense_Mutation p.S167L 0.36 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 12 89992980 89992980 C T ATP2B1 Missense_Mutation p.D1089N 0.31 tolerated(0.07) benign(0.217) TCGA-EE-A2GC-06 12 9013789 9013789 A G A2ML1 Missense_Mutation p.N1133S 0.31 tolerated(0.78) benign(0.01) TCGA-EE-A2GC-06 12 91396222 91396222 C T EPYC Missense_Mutation p.D41N 0.32 tolerated(0.19) benign(0.001) TCGA-EE-A2GC-06 12 91445191 91445191 C T KERA Missense_Mutation p.E331K 0.19 tolerated(0.56) benign(0.004) TCGA-EE-A2GC-06 12 91502583 91502583 C T LUM Silent p.L58L 0.22 TCGA-EE-A2GC-06 12 91502721 91502721 C T LUM Silent p.L12L 0.29 TCGA-EE-A2GC-06 12 9264799 9264799 G A A2M Missense_Mutation p.R147C 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 12 97150262 97150262 G A C12orf55 Missense_Mutation p.E2623K 0.32 tolerated(0.83) benign(0.025) TCGA-EE-A2GC-06 12 977790 977790 A T WNK1 Intron 0.44 TCGA-EE-A2GC-06 12 977792 977792 T C WNK1 Intron 0.45 TCGA-EE-A2GC-06 12 98987795 98987795 C T SLC25A3 Silent p.P13P 0.27 TCGA-EE-A2GC-06 12 990932 990932 C T WNK1 Silent p.T1062T 0.31 TCGA-EE-A2GC-06 12 99478708 99478708 G A ANKS1B Missense_Mutation p.P874S 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GC-06 13 101287349 101287349 G A TMTC4 Missense_Mutation p.L435F 0.28 deleterious(0) possibly_damaging(0.749) TCGA-EE-A2GC-06 13 110829287 110829287 C T COL4A1 Missense_Mutation p.M938I 0.39 benign(0.003) TCGA-EE-A2GC-06 13 111121656 111121656 T C COL4A2 Missense_Mutation p.F730L 0.35 possibly_damaging(0.603) TCGA-EE-A2GC-06 13 111147733 111147733 G A COL4A2 Missense_Mutation p.E1227K 0.25 benign(0.292) TCGA-EE-A2GC-06 13 115090556 115090556 C T CHAMP1 Silent p.P413P 0.13 TCGA-EE-A2GC-06 13 21006379 21006379 G A CRYL1 Silent p.A165A 0.36 TCGA-EE-A2GC-06 13 23911201 23911201 C T SACS Missense_Mutation p.G2272S 0.33 probably_damaging(0.999) TCGA-EE-A2GC-06 13 25283526 25283526 G A ATP12A Missense_Mutation p.E846K 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 13 27255355 27255355 G A WASF3 Missense_Mutation p.R294K 0.40 tolerated(0.1) possibly_damaging(0.54) TCGA-EE-A2GC-06 13 27260066 27260066 C T WASF3 3'UTR 0.32 TCGA-EE-A2GC-06 13 30088716 30088716 G A SLC7A1 Silent p.F597F 0.32 TCGA-EE-A2GC-06 13 32721429 32721429 C T FRY Missense_Mutation p.P397L 0.39 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2GC-06 13 32811634 32811634 C A FRY Silent p.R1977R 0.35 TCGA-EE-A2GC-06 13 32930714 32930714 G A BRCA2 Missense_Mutation p.G2529S 0.31 tolerated(0.1) possibly_damaging(0.465) TCGA-EE-A2GC-06 13 32930715 32930715 G A BRCA2 Missense_Mutation p.G2529D 0.32 tolerated(0.08) probably_damaging(0.971) TCGA-EE-A2GC-06 13 35517126 35517126 C T NBEA Missense_Mutation p.P57S 0.31 tolerated_low_confidence(0.05) benign(0.307) TCGA-EE-A2GC-06 13 35733926 35733926 A G NBEA Silent p.K1206K 0.41 TCGA-EE-A2GC-06 13 35735898 35735898 T C NBEA Silent p.G1291G 0.27 TCGA-EE-A2GC-06 13 35883726 35883726 G A NBEA Missense_Mutation p.G1967E 0.37 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GC-06 13 37269247 37269247 C T SERTM1 Missense_Mutation p.S11L 0.34 tolerated_low_confidence(0.48) benign(0) TCGA-EE-A2GC-06 13 37618230 37618230 G A SUPT20H Silent p.L127L 0.34 TCGA-EE-A2GC-06 13 39263887 39263887 C T FREM2 Silent p.F802F 0.33 TCGA-EE-A2GC-06 13 39264977 39264977 C T FREM2 Missense_Mutation p.R1166C 0.32 deleterious(0.05) benign(0.03) TCGA-EE-A2GC-06 13 39452969 39452969 A C FREM2 Missense_Mutation p.D2954A 0.32 deleterious(0) possibly_damaging(0.517) TCGA-EE-A2GC-06 13 39454666 39454666 G A FREM2 Silent p.K3084K 0.33 TCGA-EE-A2GC-06 13 42763384 42763384 C T DGKH Silent p.I617I 0.33 TCGA-EE-A2GC-06 13 43363007 43363007 A T FAM216B 3'UTR 0.31 TCGA-EE-A2GC-06 13 46287917 46287917 G A SPERT Missense_Mutation p.E253K 0.33 tolerated(0.39) probably_damaging(0.999) TCGA-EE-A2GC-06 13 46594614 46594614 C T ZC3H13 Missense_Mutation p.E140K 0.25 unknown(0) TCGA-EE-A2GC-06 13 47466613 47466613 G A HTR2A Silent p.V175V 0.15 TCGA-EE-A2GC-06 13 50586631 50586631 T A TRIM13 Missense_Mutation p.F188L 0.28 deleterious(0.01) possibly_damaging(0.523) TCGA-EE-A2GC-06 13 52523879 52523879 G A ATP7B Silent p.I928I 0.30 TCGA-EE-A2GC-06 13 52539167 52539167 G A ATP7B Silent p.I570I 0.24 TCGA-EE-A2GC-06 13 52548297 52548297 C T ATP7B Silent p.Q353Q 0.37 TCGA-EE-A2GC-06 13 58207291 58207291 A G PCDH17 Missense_Mutation p.E204G 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 13 70535554 70535554 C T KLHL1 Missense_Mutation p.D235N 0.14 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 13 74420350 74420350 G A KLF12 Missense_Mutation p.A95V 0.37 tolerated(0.24) benign(0.039) TCGA-EE-A2GC-06 13 76408439 76408439 G A LMO7 Missense_Mutation p.D815N 0.33 deleterious(0.02) possibly_damaging(0.757) TCGA-EE-A2GC-06 13 77671906 77671906 G A MYCBP2 Missense_Mutation p.P3090L 0.32 probably_damaging(0.996) TCGA-EE-A2GC-06 13 77730262 77730262 A G MYCBP2 Silent p.G2244G 0.33 TCGA-EE-A2GC-06 13 78130048 78130048 G A SCEL Missense_Mutation p.G13E 0.34 deleterious(0) possibly_damaging(0.687) TCGA-EE-A2GC-06 13 84454684 84454684 C T SLITRK1 Missense_Mutation p.R320K 0.29 tolerated(0.38) benign(0.003) TCGA-EE-A2GC-06 13 84454854 84454854 C T SLITRK1 Silent p.L263L 0.36 TCGA-EE-A2GC-06 13 92101140 92101140 A G GPC5 Missense_Mutation p.K97E 0.37 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A2GC-06 13 92345655 92345655 C T GPC5 Silent p.N180N 0.33 TCGA-EE-A2GC-06 13 95813565 95813565 A G ABCC4 Missense_Mutation p.F778S 0.28 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A2GC-06 13 95858788 95858788 G A ABCC4 Nonsense_Mutation p.Q387* 0.39 TCGA-EE-A2GC-06 13 97485261 97485261 G A HS6ST3 Missense_Mutation p.E409K 0.48 tolerated(0.09) probably_damaging(0.918) TCGA-EE-A2GC-06 13 97639844 97639844 G A OXGR1 Missense_Mutation p.T57I 0.55 tolerated(0.43) benign(0.003) TCGA-EE-A2GC-06 13 98654969 98654969 C T IPO5 Missense_Mutation p.A440V 0.40 deleterious(0) possibly_damaging(0.783) TCGA-EE-A2GC-06 14 100331891 100331891 C T EML1 Silent p.V97V 0.35 TCGA-EE-A2GC-06 14 101198519 101198519 G A DLK1 Missense_Mutation p.G135S 0.32 tolerated(0.14) probably_damaging(1) TCGA-EE-A2GC-06 14 101448317 101448317 C T SNORD114-21 RNA 0.35 TCGA-EE-A2GC-06 14 102028734 102028734 C T DIO3 Missense_Mutation p.P301S 0.33 deleterious_low_confidence(0.05) benign(0.015) TCGA-EE-A2GC-06 14 102483792 102483792 G T DYNC1H1 Missense_Mutation p.G2710W 0.35 probably_damaging(1) TCGA-EE-A2GC-06 14 103597417 103597417 G A TNFAIP2 Missense_Mutation p.E410K 0.13 tolerated(0.07) possibly_damaging(0.728) TCGA-EE-A2GC-06 14 104643552 104643552 C T KIF26A Missense_Mutation p.P1476L 0.44 tolerated(0.14) benign(0.006) TCGA-EE-A2GC-06 14 105242064 105242064 G A AKT1 Silent p.F120F 0.37 TCGA-EE-A2GC-06 14 106236650 106236650 G A IGHG3 Missense_Mutation p.P139L 0.11 tolerated(0.32) benign(0.09) TCGA-EE-A2GC-06 14 106311954 106311954 C T IGHD Missense_Mutation p.D20N 0.40 deleterious_low_confidence(0.05) benign(0.242) TCGA-EE-A2GC-06 14 106405782 106405782 C T IGHV6-1 Silent p.S64S 0.29 TCGA-EE-A2GC-06 14 106641726 106641726 C T IGHV1-18 Missense_Mutation p.G63E 0.35 deleterious(0.01) benign(0.414) TCGA-EE-A2GC-06 14 106641727 106641727 C A IGHV1-18 Missense_Mutation p.G63W 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GC-06 14 19553734 19553734 C T POTEG Silent p.F106F 0.15 TCGA-EE-A2GC-06 14 20248610 20248610 C T OR4M1 Silent p.I43I 0.32 TCGA-EE-A2GC-06 14 20296296 20296296 C T OR4N2 Missense_Mutation p.S230F 0.34 tolerated(0.06) benign(0.049) TCGA-EE-A2GC-06 14 20612138 20612138 T C OR4N5 Silent p.L82L 0.34 TCGA-EE-A2GC-06 14 20612732 20612732 C T OR4N5 Missense_Mutation p.P280S 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 14 20692516 20692516 C T OR11H6 Silent p.I216I 0.48 TCGA-EE-A2GC-06 14 20872010 20872010 G A TEP1 Missense_Mutation p.P356S 0.38 tolerated(0.28) benign(0.225) TCGA-EE-A2GC-06 14 21167874 21167874 C T RNASE4 Missense_Mutation p.S115F 0.33 deleterious(0.03) benign(0.394) TCGA-EE-A2GC-06 14 21548835 21548835 C T ARHGEF40 Missense_Mutation p.S797L 0.34 deleterious(0.01) benign(0.01) TCGA-EE-A2GC-06 14 21623790 21623790 G A OR5AU1 Missense_Mutation p.T132I 0.29 tolerated(0.05) benign(0.163) TCGA-EE-A2GC-06 14 21771647 21771647 G A RPGRIP1 Missense_Mutation p.E249K 0.12 tolerated(0.12) possibly_damaging(0.804) TCGA-EE-A2GC-06 14 21792854 21792854 G A RPGRIP1 Missense_Mutation p.D614N 0.35 tolerated(0.14) benign(0.037) TCGA-EE-A2GC-06 14 21794020 21794020 G A RPGRIP1 Missense_Mutation p.E800K 0.26 deleterious(0.02) possibly_damaging(0.896) TCGA-EE-A2GC-06 14 21834603 21834603 G A SUPT16H Silent p.N347N 0.19 TCGA-EE-A2GC-06 14 22090685 22090685 G A TRAV1-1 Missense_Mutation p.M97I 0.40 tolerated(0.49) benign(0.012) TCGA-EE-A2GC-06 14 22280037 22280037 G A TRAV9-1 Missense_Mutation p.G76R 0.18 tolerated(0.13) benign(0.061) TCGA-EE-A2GC-06 14 22280083 22280083 C T TRAV9-1 Missense_Mutation p.S91F 0.37 deleterious(0.02) benign(0.341) TCGA-EE-A2GC-06 14 22363157 22363157 G A TRAV8-4 Silent p.T96T 0.36 TCGA-EE-A2GC-06 14 22934777 22934777 G A TRDC 3'UTR 0.32 TCGA-EE-A2GC-06 14 23524545 23524545 G A CDH24 Silent p.D73D 0.29 TCGA-EE-A2GC-06 14 23829917 23829917 G A EFS Silent p.L48L 0.33 TCGA-EE-A2GC-06 14 23855289 23855289 C T MYH6 Missense_Mutation p.E1671K 0.32 deleterious(0.04) possibly_damaging(0.859) TCGA-EE-A2GC-06 14 23859562 23859562 C T MYH6 Missense_Mutation p.E1146K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 14 23866401 23866401 G A MYH6 Silent p.I676I 0.30 TCGA-EE-A2GC-06 14 24526129 24526129 C T LRRC16B Nonsense_Mutation p.Q320* 0.34 TCGA-EE-A2GC-06 14 24543814 24543814 G A CPNE6 Nonsense_Mutation p.W191* 0.15 TCGA-EE-A2GC-06 14 24780543 24780543 C T LTB4R2 Silent p.L225L 0.47 TCGA-EE-A2GC-06 14 26917425 26917425 C T NOVA1 Missense_Mutation p.D422N 0.28 tolerated(0.34) benign(0.159) TCGA-EE-A2GC-06 14 26917426 26917426 C T NOVA1 Silent p.K421K 0.27 TCGA-EE-A2GC-06 14 34270029 34270029 C T NPAS3 Missense_Mutation p.A839V 0.38 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EE-A2GC-06 14 35786493 35786493 C T PSMA6 Missense_Mutation p.A241V 0.35 deleterious(0.05) benign(0.002) TCGA-EE-A2GC-06 14 36946289 36946289 C T SFTA3 Missense_Mutation p.E50K 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.486) TCGA-EE-A2GC-06 14 42356771 42356771 G A LRFN5 Missense_Mutation p.E315K 0.38 deleterious(0.04) probably_damaging(0.969) TCGA-EE-A2GC-06 14 44975965 44975965 C T FSCB Missense_Mutation p.D76N 0.34 deleterious(0) possibly_damaging(0.456) TCGA-EE-A2GC-06 14 45636402 45636402 C T FANCM Intron 0.32 TCGA-EE-A2GC-06 14 47120662 47120662 G A RPL10L Missense_Mutation p.P93L 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2GC-06 14 50360697 50360697 C T ARF6 Silent p.T81T 0.48 TCGA-EE-A2GC-06 14 50862430 50862430 G A CDKL1 Nonsense_Mutation p.R54* 0.41 TCGA-EE-A2GC-06 14 51448794 51448794 G A TRIM9 Missense_Mutation p.S544L 0.31 tolerated(0.13) benign(0.042) TCGA-EE-A2GC-06 14 55226996 55226996 C T SAMD4A Missense_Mutation p.P432S 0.37 tolerated(0.19) benign(0) TCGA-EE-A2GC-06 14 55453880 55453880 G A WDHD1 Silent p.F584F 0.30 TCGA-EE-A2GC-06 14 55510448 55510448 C T SOCS4 Missense_Mutation p.S230F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 14 56233556 56233556 C T RP11-813I20.2 Intron 0.38 TCGA-EE-A2GC-06 14 61186639 61186639 G A SIX4 Missense_Mutation p.S463F 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 14 63174777 63174777 C T KCNH5 Missense_Mutation p.G806R 0.27 tolerated_low_confidence(0.33) benign(0.001) TCGA-EE-A2GC-06 14 63316382 63316382 C T KCNH5 Missense_Mutation p.D520N 0.37 deleterious(0) probably_damaging(0.947) TCGA-EE-A2GC-06 14 64065642 64065642 C T WDR89 Missense_Mutation p.G340E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 14 68193771 68193771 C T RDH12 Silent p.S174S 0.22 TCGA-EE-A2GC-06 14 68221863 68221863 G A ZFYVE26 Silent p.D2297D 0.44 TCGA-EE-A2GC-06 14 69369207 69369207 G A ACTN1 Missense_Mutation p.S250F 0.32 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GC-06 14 70634843 70634843 C T SLC8A3 Missense_Mutation p.M99I 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 14 71444814 71444814 C T PCNX Missense_Mutation p.S587F 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.498) TCGA-EE-A2GC-06 14 72976970 72976970 C T RGS6 Silent p.F358F 0.38 TCGA-EE-A2GC-06 14 72985220 72985220 G A RGS6 Missense_Mutation p.G418E 0.35 deleterious(0.01) possibly_damaging(0.48) TCGA-EE-A2GC-06 14 74411260 74411260 C T FAM161B Missense_Mutation p.E298K 0.39 deleterious(0.01) possibly_damaging(0.505) TCGA-EE-A2GC-06 14 74823753 74823753 G A VRTN Silent p.A89A 0.35 TCGA-EE-A2GC-06 14 74970008 74970008 C T LTBP2 Missense_Mutation p.G1601E 0.33 tolerated(0.11) probably_damaging(1) TCGA-EE-A2GC-06 14 75134175 75134175 G A AREL1 Silent p.F679F 0.30 TCGA-EE-A2GC-06 14 75247117 75247117 C T YLPM1 Missense_Mutation p.P374S 0.28 unknown(0) TCGA-EE-A2GC-06 14 75330247 75330247 C T PROX2 Silent p.K97K 0.27 TCGA-EE-A2GC-06 14 75330436 75330436 C T PROX2 Silent p.L34L 0.27 TCGA-EE-A2GC-06 14 77719649 77719649 C T TMEM63C Missense_Mutation p.P717L 0.67 tolerated(0.63) benign(0) TCGA-EE-A2GC-06 14 79181112 79181112 G A NRXN3 Silent p.V185V 0.23 TCGA-EE-A2GC-06 14 80668588 80668588 A T DIO2 3'Flank 0.37 TCGA-EE-A2GC-06 14 81862514 81862514 C T STON2 Missense_Mutation p.E33K 0.38 tolerated_low_confidence(0.14) benign(0.014) TCGA-EE-A2GC-06 14 88448548 88448548 C T GALC Splice_Site p.X207_splice 0.28 TCGA-EE-A2GC-06 14 88477678 88477678 G A GPR65 Missense_Mutation p.E163K 0.37 tolerated(0.36) benign(0.001) TCGA-EE-A2GC-06 14 88729597 88729597 G A KCNK10 Silent p.F117F 0.25 TCGA-EE-A2GC-06 14 88792854 88792854 C T KCNK10 5'Flank 0.18 TCGA-EE-A2GC-06 14 90651002 90651002 G A KCNK13 Missense_Mutation p.M294I 0.31 tolerated(0.1) benign(0.001) TCGA-EE-A2GC-06 14 92055942 92055942 G A CATSPERB Silent p.V964V 0.35 TCGA-EE-A2GC-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.44 TCGA-EE-A2GC-06 14 92265359 92265359 T C TC2N Missense_Mutation p.N204S 0.21 tolerated(0.26) benign(0.024) TCGA-EE-A2GC-06 14 93760510 93760510 G A BTBD7 Missense_Mutation p.P286S 0.42 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A2GC-06 14 94053136 94053136 C T UNC79 Missense_Mutation p.L795F 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 14 94053162 94053162 G A UNC79 Silent p.K803K 0.31 TCGA-EE-A2GC-06 14 94395518 94395518 G A FAM181A 3'UTR 0.39 TCGA-EE-A2GC-06 14 94770800 94770800 G A SERPINA6 Silent p.F391F 0.19 TCGA-EE-A2GC-06 14 94929361 94929361 A T SERPINA9 3'UTR 0.26 TCGA-EE-A2GC-06 14 94942651 94942651 C T SERPINA9 5'Flank 0.50 TCGA-EE-A2GC-06 14 95081262 95081262 G A SERPINA3 Missense_Mutation p.G162S 0.38 tolerated(0.69) benign(0.015) TCGA-EE-A2GC-06 14 95108138 95108138 G A SERPINA13P RNA 0.29 TCGA-EE-A2GC-06 14 95596409 95596409 G A DICER1 Nonsense_Mutation p.R187* 0.24 TCGA-EE-A2GC-06 14 95912270 95912270 G A SYNE3 Silent p.L536L 0.30 TCGA-EE-A2GC-06 14 96131408 96131408 G A TCL6 RNA 0.18 TCGA-EE-A2GC-06 14 96136862 96136862 C T TCL6 RNA 0.39 TCGA-EE-A2GC-06 14 96916185 96916185 G A AK7 Missense_Mutation p.R306K 0.25 tolerated(1) benign(0) TCGA-EE-A2GC-06 14 99959863 99959863 C T CCNK Silent p.T70T 0.32 TCGA-EE-A2GC-06 15 21071334 21071334 C T POTEB2 Missense_Mutation p.E93K 0.24 tolerated(0.06) possibly_damaging(0.714) TCGA-EE-A2GC-06 15 22368842 22368842 G A OR4M2 Silent p.R89R 0.39 TCGA-EE-A2GC-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.31 deleterious(0.01) benign(0.037) TCGA-EE-A2GC-06 15 22369379 22369379 C T OR4M2 Silent p.S268S 0.37 TCGA-EE-A2GC-06 15 22383340 22383340 C T OR4N4 Missense_Mutation p.R290C 0.30 deleterious(0.02) benign(0.019) TCGA-EE-A2GC-06 15 24921998 24921998 G A NPAP1 Silent p.R328R 0.36 TCGA-EE-A2GC-06 15 25222117 25222117 C T SNRPN Missense_Mutation p.P121S 0.38 tolerated(0.19) benign(0.057) TCGA-EE-A2GC-06 15 25425476 25425476 C G SNORD115-6 5'Flank 0.38 TCGA-EE-A2GC-06 15 25436402 25436402 G C SNORD115-11 3'Flank 0.19 TCGA-EE-A2GC-06 15 25442776 25442776 C T SNORD115-15 RNA 0.36 TCGA-EE-A2GC-06 15 25453235 25453235 G A SNORD115-21 RNA 0.16 TCGA-EE-A2GC-06 15 25453283 25453283 C T SNORD115-21 RNA 0.38 TCGA-EE-A2GC-06 15 25514984 25514984 C T SNORD115-48 RNA 0.44 TCGA-EE-A2GC-06 15 34355903 34355903 G A CHRM5 Missense_Mutation p.G329S 0.35 tolerated(0.31) benign(0.002) TCGA-EE-A2GC-06 15 38233393 38233393 A T TMCO5A Missense_Mutation p.K144M 0.30 tolerated(0.07) benign(0.221) TCGA-EE-A2GC-06 15 39877740 39877740 G A THBS1 Missense_Mutation p.G366R 0.47 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A2GC-06 15 40675049 40675049 G A KNSTRN Missense_Mutation p.E5K 0.26 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A2GC-06 15 40697957 40697957 G A IVD 5'Flank 0.36 TCGA-EE-A2GC-06 15 41068488 41068488 G A DNAJC17 Silent p.I128I 0.37 TCGA-EE-A2GC-06 15 41797411 41797411 G A LTK Silent p.I640I 0.34 TCGA-EE-A2GC-06 15 42128408 42128408 C T JMJD7-PLA2G4B Missense_Mutation p.H198Y 0.32 deleterious_low_confidence(0) benign(0.14) TCGA-EE-A2GC-06 15 42641675 42641675 C T GANC Missense_Mutation p.S838F 0.35 benign(0.27) TCGA-EE-A2GC-06 15 43705379 43705379 T G TP53BP1 Missense_Mutation p.D1748A 0.31 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GC-06 15 43705380 43705380 C A TP53BP1 Missense_Mutation p.D1748Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 15 43705503 43705503 G A TP53BP1 Missense_Mutation p.P1707S 0.33 tolerated(0.08) possibly_damaging(0.69) TCGA-EE-A2GC-06 15 43705504 43705504 G A TP53BP1 Silent p.S1706S 0.37 TCGA-EE-A2GC-06 15 45545416 45545416 G A SLC28A2 Translation_Start_Site p.M1? 0.54 deleterious_low_confidence(0.01) benign(0.03) TCGA-EE-A2GC-06 15 48513143 48513143 G A SLC12A1 Missense_Mutation p.G193E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 15 48802295 48802295 G A FBN1 Missense_Mutation p.H554Y 0.17 possibly_damaging(0.89) TCGA-EE-A2GC-06 15 49882087 49882087 G A FAM227B Missense_Mutation p.P75S 0.20 deleterious(0.04) benign(0.3) TCGA-EE-A2GC-06 15 50540490 50540490 G A HDC Silent p.F364F 0.45 TCGA-EE-A2GC-06 15 51687123 51687123 G A GLDN Silent p.G211G 0.21 TCGA-EE-A2GC-06 15 51993416 51993416 A G SCG3 Silent p.P394P 0.31 TCGA-EE-A2GC-06 15 52539675 52539675 G A MYO5C Missense_Mutation p.R621W 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 15 53901721 53901721 G A WDR72 Nonsense_Mutation p.Q981* 0.22 TCGA-EE-A2GC-06 15 54305335 54305335 G A UNC13C Missense_Mutation p.E79K 0.51 deleterious_low_confidence(0.01) benign(0.146) TCGA-EE-A2GC-06 15 54307723 54307723 G A UNC13C Missense_Mutation p.E875K 0.38 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-EE-A2GC-06 15 54527306 54527306 G A UNC13C Silent p.V1050V 0.23 TCGA-EE-A2GC-06 15 54707217 54707217 G A UNC13C Missense_Mutation p.E1629K 0.45 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 15 55972763 55972763 G A PRTG Missense_Mutation p.S247F 0.37 tolerated(0.06) probably_damaging(0.958) TCGA-EE-A2GC-06 15 56970922 56970922 G A ZNF280D Missense_Mutation p.P368S 0.36 deleterious(0.05) benign(0.131) TCGA-EE-A2GC-06 15 59961534 59961534 G A BNIP2 Silent p.I366I 0.34 TCGA-EE-A2GC-06 15 63904509 63904509 G A HERC1 Nonsense_Mutation p.R4781* 0.42 TCGA-EE-A2GC-06 15 64967617 64967617 G A ZNF609 Missense_Mutation p.G855E 0.41 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 15 65235725 65235725 G A ANKDD1A Missense_Mutation p.D338N 0.38 tolerated(0.06) benign(0.25) TCGA-EE-A2GC-06 15 65685779 65685779 G A IGDCC4 Missense_Mutation p.S602L 0.34 deleterious(0.01) benign(0.013) TCGA-EE-A2GC-06 15 65851053 65851053 C T PTPLAD1 Silent p.S135S 0.57 TCGA-EE-A2GC-06 15 67004021 67004021 C T SMAD6 Missense_Mutation p.P278L 0.29 deleterious(0) possibly_damaging(0.614) TCGA-EE-A2GC-06 15 68657105 68657105 C T ITGA11 Silent p.R99R 0.40 TCGA-EE-A2GC-06 15 69018316 69018316 C T CORO2B 3'UTR 0.46 TCGA-EE-A2GC-06 15 69692348 69692348 A G PAQR5 Silent p.E215E 0.32 TCGA-EE-A2GC-06 15 71433893 71433893 C T THSD4 Silent p.L9L 0.25 TCGA-EE-A2GC-06 15 71534994 71534994 G A THSD4 Silent p.R157R 0.35 TCGA-EE-A2GC-06 15 72020956 72020956 G A THSD4 Missense_Mutation p.E476K 0.16 deleterious(0.02) benign(0.36) TCGA-EE-A2GC-06 15 72502030 72502030 G A PKM Silent p.L183L 0.35 TCGA-EE-A2GC-06 15 72543556 72543556 G A PARP6 Missense_Mutation p.L434F 0.43 tolerated(0.05) possibly_damaging(0.548) TCGA-EE-A2GC-06 15 72643413 72643413 G A HEXA Intron 0.42 TCGA-EE-A2GC-06 15 72643414 72643414 G A HEXA Intron 0.40 TCGA-EE-A2GC-06 15 72643417 72643417 C A HEXA Intron 0.40 TCGA-EE-A2GC-06 15 73590734 73590734 C T NEO1 Missense_Mutation p.S1316L 0.38 tolerated(0.21) possibly_damaging(0.809) TCGA-EE-A2GC-06 15 74178861 74178861 G A TBC1D21 Missense_Mutation p.G229S 0.35 deleterious(0.05) benign(0.192) TCGA-EE-A2GC-06 15 74181416 74181416 C T TBC1D21 Nonsense_Mutation p.Q329* 0.32 TCGA-EE-A2GC-06 15 74235199 74235199 C T LOXL1 Silent p.L369L 0.36 TCGA-EE-A2GC-06 15 74474685 74474685 A C STRA6 Missense_Mutation p.W512G 0.34 deleterious(0) benign(0.39) TCGA-EE-A2GC-06 15 75042330 75042330 C T CYP1A2 Missense_Mutation p.P84L 0.53 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 15 75500890 75500890 C T C15orf39 Missense_Mutation p.P834L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 15 76496685 76496685 G A C15orf27 3'UTR 0.23 TCGA-EE-A2GC-06 15 78873238 78873238 T A CHRNA5 Silent p.P64P 0.34 TCGA-EE-A2GC-06 15 78921781 78921781 G A CHRNB4 Missense_Mutation p.S289F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 15 79298706 79298706 G A RASGRF1 Silent p.L646L 0.33 TCGA-EE-A2GC-06 15 79755471 79755471 C T KIAA1024 Silent p.F787F 0.33 TCGA-EE-A2GC-06 15 80191219 80191219 G A ST20 3'UTR 0.32 TCGA-EE-A2GC-06 15 80215371 80215371 G A C15orf37 Missense_Mutation p.E86K 0.50 possibly_damaging(0.502) TCGA-EE-A2GC-06 15 81578072 81578072 C T IL16 Silent p.S411S 0.38 TCGA-EE-A2GC-06 15 81578073 81578073 C T IL16 Missense_Mutation p.P412S 0.39 tolerated(0.71) benign(0.114) TCGA-EE-A2GC-06 15 85342003 85342003 C T ZNF592 Missense_Mutation p.A974V 0.44 tolerated(0.21) benign(0.157) TCGA-EE-A2GC-06 15 86809611 86809611 G A AGBL1 Silent p.R512R 0.38 TCGA-EE-A2GC-06 15 90342704 90342704 C T ANPEP Missense_Mutation p.E636K 0.35 tolerated(0.78) benign(0.017) TCGA-EE-A2GC-06 15 91150629 91150629 C T CRTC3 Missense_Mutation p.L166F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 15 91292641 91292641 C T BLM Missense_Mutation p.S48F 0.34 deleterious(0) possibly_damaging(0.868) TCGA-EE-A2GC-06 15 91461493 91461493 C T MAN2A2 Missense_Mutation p.P1022S 0.33 deleterious(0.02) benign(0.035) TCGA-EE-A2GC-06 15 91835912 91835912 C T SV2B 3'UTR 0.26 TCGA-EE-A2GC-06 15 93173526 93173526 G A FAM174B Missense_Mutation p.P132S 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2GC-06 15 99670306 99670306 C T SYNM Silent p.L580L 0.32 TCGA-EE-A2GC-06 16 10032005 10032005 G A GRIN2A Missense_Mutation p.P273L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 16 10995407 10995407 G A CIITA Nonsense_Mutation p.W158* 0.38 TCGA-EE-A2GC-06 16 11097026 11097026 G A CLEC16A Silent p.K389K 0.32 TCGA-EE-A2GC-06 16 11348686 11348686 G A SOCS1 3'UTR 0.31 TCGA-EE-A2GC-06 16 142606 142606 G A NPRL3 Silent p.P383P 0.53 TCGA-EE-A2GC-06 16 14970343 14970343 C T NOMO1 Silent p.I828I 0.45 TCGA-EE-A2GC-06 16 1537410 1537410 C T PTX4 Missense_Mutation p.E230K 0.59 tolerated(0.62) benign(0.026) TCGA-EE-A2GC-06 16 15818560 15818560 C T MYH11 Missense_Mutation p.E1361K 0.46 probably_damaging(0.998) TCGA-EE-A2GC-06 16 16228264 16228264 C T ABCC1 Missense_Mutation p.R1342W 0.35 deleterious(0) possibly_damaging(0.735) TCGA-EE-A2GC-06 16 16297280 16297280 G A ABCC6 Missense_Mutation p.P329S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 16 16297281 16297281 G A ABCC6 Silent p.V328V 0.24 TCGA-EE-A2GC-06 16 17202538 17202538 C T XYLT1 3'UTR 0.56 TCGA-EE-A2GC-06 16 17228497 17228497 G A XYLT1 Silent p.Y620Y 0.22 TCGA-EE-A2GC-06 16 19020543 19020543 C T TMC7 Silent p.F39F 0.56 TCGA-EE-A2GC-06 16 19505675 19505675 G A TMC5 Missense_Mutation p.R973K 0.23 deleterious(0.03) benign(0.269) TCGA-EE-A2GC-06 16 19505676 19505676 G A TMC5 Silent p.R973R 0.24 TCGA-EE-A2GC-06 16 19539282 19539282 C T CCP110 Missense_Mutation p.P27S 0.43 tolerated(0.18) probably_damaging(0.996) TCGA-EE-A2GC-06 16 19592973 19592973 C T C16orf62 Nonsense_Mutation p.Q302* 0.32 TCGA-EE-A2GC-06 16 20322599 20322599 G A GP2 Silent p.F520F 0.12 TCGA-EE-A2GC-06 16 20451131 20451131 G A ACSM5 Missense_Mutation p.A516T 0.08 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GC-06 16 20548646 20548646 C T ACSM2B Silent p.G556G 0.23 TCGA-EE-A2GC-06 16 20563565 20563565 C T ACSM2B Nonsense_Mutation p.W265* 0.20 TCGA-EE-A2GC-06 16 20974677 20974677 C T DNAH3 Missense_Mutation p.G3510E 0.54 tolerated(0.51) benign(0.021) TCGA-EE-A2GC-06 16 20974678 20974678 C T DNAH3 Missense_Mutation p.G3510R 0.55 tolerated(0.32) benign(0.03) TCGA-EE-A2GC-06 16 21011568 21011568 C T DNAH3 Silent p.G2133G 0.44 TCGA-EE-A2GC-06 16 21157305 21157305 C T DNAH3 Silent p.Q74Q 0.24 TCGA-EE-A2GC-06 16 2162886 2162886 G A PKD1 Silent p.L1022L 0.24 TCGA-EE-A2GC-06 16 21709162 21709162 C T OTOA Missense_Mutation p.S269L 0.36 deleterious(0) possibly_damaging(0.802) TCGA-EE-A2GC-06 16 23197638 23197638 C T SCNN1G Missense_Mutation p.P16S 0.18 deleterious(0.01) possibly_damaging(0.798) TCGA-EE-A2GC-06 16 23223406 23223406 G T SCNN1G Missense_Mutation p.A410S 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 16 23364349 23364349 C T SCNN1B Missense_Mutation p.S180L 0.23 tolerated(0.3) benign(0.102) TCGA-EE-A2GC-06 16 23428399 23428399 G A COG7 Missense_Mutation p.S394F 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GC-06 16 23581893 23581893 G A UBFD1 Silent p.G304G 0.17 TCGA-EE-A2GC-06 16 23640972 23640972 A G PALB2 Missense_Mutation p.S835P 0.17 tolerated(0.09) benign(0.178) TCGA-EE-A2GC-06 16 24166021 24166021 G A PRKCB Missense_Mutation p.R361Q 0.19 tolerated(0.16) benign(0.039) TCGA-EE-A2GC-06 16 24192149 24192149 G A PRKCB Missense_Mutation p.G478E 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 16 24372902 24372902 C T CACNG3 Silent p.A222A 0.20 TCGA-EE-A2GC-06 16 25182046 25182046 C A LCMT1 Silent p.L268L 0.43 TCGA-EE-A2GC-06 16 2522769 2522769 C T NTN3 Silent p.R332R 0.26 TCGA-EE-A2GC-06 16 2636802 2636802 C T PDPK1 Silent p.H417H 0.27 TCGA-EE-A2GC-06 16 27375055 27375055 C T IL4R Silent p.S794S 0.20 TCGA-EE-A2GC-06 16 27460366 27460366 C T IL21R Missense_Mutation p.A460V 0.11 tolerated(0.51) benign(0.023) TCGA-EE-A2GC-06 16 27495610 27495610 G A GTF3C1 Missense_Mutation p.S1308F 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 16 2814308 2814308 T C SRRM2 Missense_Mutation p.L1260P 0.22 unknown(0) TCGA-EE-A2GC-06 16 28842057 28842057 C T ATXN2L Missense_Mutation p.H386Y 0.51 tolerated(0.23) possibly_damaging(0.901) TCGA-EE-A2GC-06 16 28844625 28844625 C T ATXN2L Silent p.P635P 0.24 TCGA-EE-A2GC-06 16 28846987 28846987 C T ATXN2L Missense_Mutation p.P935S 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 16 2903113 2903113 C T PRSS22 Missense_Mutation p.G312E 0.36 deleterious_low_confidence(0.04) benign(0.021) TCGA-EE-A2GC-06 16 30020353 30020353 C T DOC2A Missense_Mutation p.G164E 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 16 30518177 30518177 G A ITGAL Silent p.K836K 0.25 TCGA-EE-A2GC-06 16 3065567 3065567 C T CLDN6 Silent p.V152V 0.41 TCGA-EE-A2GC-06 16 30900257 30900257 C G BCL7C Missense_Mutation p.G151A 0.12 tolerated(0.88) benign(0.001) TCGA-EE-A2GC-06 16 31075148 31075148 G A ZNF668 Silent p.L234L 0.38 TCGA-EE-A2GC-06 16 31424240 31424240 G A ITGAD Missense_Mutation p.G597R 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2GC-06 16 32264887 32264887 G A TP53TG3D Silent p.L71L 0.15 TCGA-EE-A2GC-06 16 3458558 3458558 C T ZNF174 Missense_Mutation p.P288L 0.27 deleterious(0.01) benign(0.115) TCGA-EE-A2GC-06 16 3639678 3639678 G A SLX4 Missense_Mutation p.P1321S 0.26 tolerated(0.87) benign(0.003) TCGA-EE-A2GC-06 16 3824617 3824617 G A CREBBP Missense_Mutation p.P746S 0.15 probably_damaging(0.925) TCGA-EE-A2GC-06 16 396430 396430 G A AXIN1 Missense_Mutation p.P199L 0.53 tolerated(0.13) probably_damaging(1) TCGA-EE-A2GC-06 16 396431 396431 G A AXIN1 Missense_Mutation p.P199S 0.53 tolerated(0.15) probably_damaging(1) TCGA-EE-A2GC-06 16 46638319 46638319 G T SHCBP1 Missense_Mutation p.H248Q 0.39 tolerated(0.79) benign(0) TCGA-EE-A2GC-06 16 48119552 48119552 C T ABCC12 Silent p.G1260G 0.44 TCGA-EE-A2GC-06 16 48130803 48130803 A G ABCC12 Missense_Mutation p.Y1017H 0.45 deleterious(0.02) benign(0.021) TCGA-EE-A2GC-06 16 4934167 4934167 C T PPL Missense_Mutation p.E1497K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 16 52497939 52497939 C T TOX3 Silent p.Q105Q 0.37 TCGA-EE-A2GC-06 16 53526165 53526165 T A AKTIP 3'UTR 0.44 TCGA-EE-A2GC-06 16 54318800 54318800 C T IRX3 Silent p.L331L 0.44 TCGA-EE-A2GC-06 16 55363128 55363128 C T IRX6 Missense_Mutation p.P413L 0.12 tolerated(0.1) benign(0.118) TCGA-EE-A2GC-06 16 57761237 57761237 G A CCDC135 Silent p.E704E 0.34 TCGA-EE-A2GC-06 16 58036463 58036463 C T USB1 Missense_Mutation p.P60L 0.24 tolerated(0.71) benign(0.296) TCGA-EE-A2GC-06 16 58043978 58043978 C T USB1 Silent p.F137F 0.43 TCGA-EE-A2GC-06 16 61687930 61687930 C T CDH8 Missense_Mutation p.R661Q 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2GC-06 16 632295 632295 C T PIGQ Intron 0.38 TCGA-EE-A2GC-06 16 66919225 66919225 G A PDP2 Silent p.R346R 0.49 TCGA-EE-A2GC-06 16 66945091 66945091 C T CDH16 Missense_Mutation p.D640N 0.39 deleterious(0.05) benign(0.258) TCGA-EE-A2GC-06 16 67318673 67318673 C T PLEKHG4 Missense_Mutation p.P584S 0.33 tolerated(0.93) benign(0.015) TCGA-EE-A2GC-06 16 67322075 67322075 C T PLEKHG4 Missense_Mutation p.R1076C 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 16 68260301 68260301 G A NFATC3 Missense_Mutation p.G1052E 0.25 deleterious_low_confidence(0) benign(0.151) TCGA-EE-A2GC-06 16 68373461 68373461 G A PRMT7 Missense_Mutation p.M247I 0.60 tolerated(0.34) benign(0.001) TCGA-EE-A2GC-06 16 68405116 68405116 G A SMPD3 Silent p.L323L 0.13 TCGA-EE-A2GC-06 16 68894226 68894226 C T TANGO6 Silent p.V178V 0.26 TCGA-EE-A2GC-06 16 69202861 69202861 C T CIRH1A 3'UTR 0.44 TCGA-EE-A2GC-06 16 70688538 70688538 G A IL34 Silent p.R42R 0.13 TCGA-EE-A2GC-06 16 70698331 70698331 G A MTSS1L Missense_Mutation p.S498F 0.20 deleterious(0) possibly_damaging(0.759) TCGA-EE-A2GC-06 16 70871691 70871691 G A HYDIN Missense_Mutation p.P4382S 0.15 probably_damaging(0.932) TCGA-EE-A2GC-06 16 70908741 70908741 C T HYDIN Missense_Mutation p.E3547K 0.36 possibly_damaging(0.801) TCGA-EE-A2GC-06 16 70916787 70916787 C T HYDIN Missense_Mutation p.E3331K 0.45 benign(0.018) TCGA-EE-A2GC-06 16 70989284 70989284 C T HYDIN Missense_Mutation p.E2104K 0.14 benign(0.351) TCGA-EE-A2GC-06 16 71127753 71127753 C T HYDIN Silent p.G471G 0.41 TCGA-EE-A2GC-06 16 71668133 71668133 G A MARVELD3 Intron 0.25 TCGA-EE-A2GC-06 16 71682711 71682711 G A PHLPP2 3'UTR 0.28 TCGA-EE-A2GC-06 16 72132922 72132922 C T DHX38 Silent p.T287T 0.17 TCGA-EE-A2GC-06 16 74447545 74447545 G A CLEC18B Silent p.G162G 0.13 TCGA-EE-A2GC-06 16 746788 746788 C T FBXL16 Silent p.T206T 0.31 TCGA-EE-A2GC-06 16 746997 746997 G A FBXL16 Missense_Mutation p.L137F 0.40 tolerated(0.05) benign(0.02) TCGA-EE-A2GC-06 16 75513311 75513311 G A CHST6 Missense_Mutation p.P139L 0.14 deleterious(0.02) benign(0.219) TCGA-EE-A2GC-06 16 75579379 75579379 G A TMEM231 Silent p.L180L 0.27 TCGA-EE-A2GC-06 16 77325226 77325226 C T ADAMTS18 Silent p.R1113R 0.17 TCGA-EE-A2GC-06 16 77398203 77398203 G A ADAMTS18 Missense_Mutation p.S285L 0.32 deleterious(0.04) probably_damaging(0.964) TCGA-EE-A2GC-06 16 77465421 77465421 G A ADAMTS18 Missense_Mutation p.S89L 0.24 deleterious(0.05) benign(0.311) TCGA-EE-A2GC-06 16 80583386 80583386 C G DYNLRB2 Missense_Mutation p.P29A 0.50 tolerated(0.19) probably_damaging(0.999) TCGA-EE-A2GC-06 16 80638340 80638340 G A CDYL2 Missense_Mutation p.S489F 0.44 deleterious(0) possibly_damaging(0.879) TCGA-EE-A2GC-06 16 81056470 81056470 C T CENPN Intron 0.33 TCGA-EE-A2GC-06 16 81134869 81134869 G A GCSH 5'Flank 0.16 TCGA-EE-A2GC-06 16 81142880 81142880 C T RNU6-1191P 5'Flank 0.25 TCGA-EE-A2GC-06 16 81145869 81145869 G A PKD1L2 RNA 0.22 TCGA-EE-A2GC-06 16 81960745 81960745 G A PLCG2 Missense_Mutation p.D826N 0.26 deleterious(0) possibly_damaging(0.802) TCGA-EE-A2GC-06 16 81971475 81971475 C T PLCG2 Silent p.S1055S 0.42 TCGA-EE-A2GC-06 16 84067033 84067033 G A SLC38A8 Missense_Mutation p.P144S 0.18 tolerated(0.13) possibly_damaging(0.734) TCGA-EE-A2GC-06 16 84101344 84101344 G A MBTPS1 Missense_Mutation p.S719L 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GC-06 16 84193376 84193376 G A DNAAF1 Missense_Mutation p.D280N 0.19 deleterious(0.03) possibly_damaging(0.882) TCGA-EE-A2GC-06 16 843212 843212 G A CHTF18 Silent p.K580K 0.53 TCGA-EE-A2GC-06 16 84456253 84456253 G T ATP2C2 Missense_Mutation p.G265W 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 16 84778852 84778852 C T USP10 Silent p.F255F 0.48 TCGA-EE-A2GC-06 16 84797807 84797807 C T USP10 Silent p.S590S 0.22 TCGA-EE-A2GC-06 16 85100626 85100626 C T KIAA0513 5'UTR 0.25 TCGA-EE-A2GC-06 16 85100744 85100744 C T KIAA0513 Missense_Mutation p.P23S 0.33 tolerated_low_confidence(0.09) benign(0.004) TCGA-EE-A2GC-06 16 88781504 88781504 C T CTU2 Missense_Mutation p.R490C 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 16 88872152 88872152 T C CDT1 Missense_Mutation p.V236A 0.24 deleterious(0) benign(0.395) TCGA-EE-A2GC-06 16 89293871 89293871 C T ZNF778 Missense_Mutation p.P364L 0.47 deleterious(0) benign(0.012) TCGA-EE-A2GC-06 16 89703943 89703943 A G DPEP1 Missense_Mutation p.N279S 0.47 tolerated(0.08) benign(0.003) TCGA-EE-A2GC-06 16 90001540 90001540 C T TUBB3 Silent p.H227H 0.17 TCGA-EE-A2GC-06 16 90072785 90072785 G A DBNDD1 Silent p.V165V 0.41 TCGA-EE-A2GC-06 16 90124943 90124943 C T PRDM7 Splice_Site p.X412_splice 0.18 TCGA-EE-A2GC-06 16 90244184 90244184 G A FAM157C RNA 0.58 TCGA-EE-A2GC-06 16 9892299 9892299 C T GRIN2A Missense_Mutation p.D731N 0.22 deleterious(0) possibly_damaging(0.657) TCGA-EE-A2GC-06 16 9916226 9916226 C T GRIN2A Missense_Mutation p.G688E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 16 9923318 9923318 C T GRIN2A Missense_Mutation p.E657K 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 16 9934887 9934887 G A GRIN2A Missense_Mutation p.S468F 0.28 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GC-06 17 10224979 10224979 G A MYH13 Missense_Mutation p.S994F 0.64 deleterious(0) benign(0.072) TCGA-EE-A2GC-06 17 10227386 10227386 G A MYH13 Silent p.L963L 0.71 TCGA-EE-A2GC-06 17 10258257 10258257 G A MYH13 Missense_Mutation p.H286Y 0.57 deleterious(0) possibly_damaging(0.532) TCGA-EE-A2GC-06 17 10348361 10348361 G A MYH4 Missense_Mutation p.R1800C 0.57 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GC-06 17 10356592 10356592 C T MYH4 Silent p.L996L 0.55 TCGA-EE-A2GC-06 17 10399338 10399338 C T MYH1 Missense_Mutation p.E1700K 0.52 deleterious(0.01) possibly_damaging(0.852) TCGA-EE-A2GC-06 17 10408589 10408589 G A MYH1 Missense_Mutation p.L776F 0.56 tolerated(0.09) benign(0.057) TCGA-EE-A2GC-06 17 10428661 10428661 C T MYH2 Silent p.E1514E 0.70 TCGA-EE-A2GC-06 17 10432099 10432099 G A MYH2 Nonsense_Mutation p.R1218* 0.60 TCGA-EE-A2GC-06 17 10608567 10608567 G A ADPRM Nonsense_Mutation p.W108* 0.62 TCGA-EE-A2GC-06 17 10608568 10608568 G A ADPRM Missense_Mutation p.G109R 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 17 11592929 11592929 G A DNAH9 Missense_Mutation p.E1264K 0.55 benign(0.002) TCGA-EE-A2GC-06 17 11593453 11593453 G A DNAH9 Silent p.K1438K 0.50 TCGA-EE-A2GC-06 17 12661460 12661460 C T MYOCD Missense_Mutation p.T754I 0.52 tolerated(0.07) possibly_damaging(0.576) TCGA-EE-A2GC-06 17 12666536 12666536 C T MYOCD Missense_Mutation p.P846S 0.45 tolerated(0.39) benign(0.039) TCGA-EE-A2GC-06 17 12666537 12666537 C T MYOCD Missense_Mutation p.P846L 0.45 deleterious(0) benign(0.085) TCGA-EE-A2GC-06 17 12666806 12666806 G A MYOCD Missense_Mutation p.E936K 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 17 1582092 1582092 G A PRPF8 Silent p.H561H 0.63 TCGA-EE-A2GC-06 17 16256435 16256435 G A CENPV Silent p.L106L 0.14 TCGA-EE-A2GC-06 17 18059562 18059562 A G MYO15A Missense_Mutation p.N2838S 0.67 unknown(0) TCGA-EE-A2GC-06 17 18397704 18397704 G A LGALS9C 3'UTR 0.42 TCGA-EE-A2GC-06 17 18397705 18397705 G A LGALS9C 3'UTR 0.42 TCGA-EE-A2GC-06 17 18769194 18769194 C T PRPSAP2 Silent p.T16T 0.72 TCGA-EE-A2GC-06 17 18927548 18927548 C T GRAP Missense_Mutation p.D150N 0.70 deleterious(0.02) probably_damaging(0.965) TCGA-EE-A2GC-06 17 1945386 1945386 C T OVCA2 Silent p.F15F 0.55 TCGA-EE-A2GC-06 17 20805983 20805983 C T RP11-344E13.3 RNA 0.67 TCGA-EE-A2GC-06 17 263446 263446 C T C17orf97 Missense_Mutation p.A271V 0.70 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GC-06 17 26850995 26850995 C T FOXN1 Missense_Mutation p.S3L 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GC-06 17 27010091 27010091 C T SUPT6H Missense_Mutation p.P620L 0.30 deleterious(0) possibly_damaging(0.474) TCGA-EE-A2GC-06 17 29325795 29325795 G A RNF135 Silent p.E295E 0.62 TCGA-EE-A2GC-06 17 29665053 29665053 C T NF1 Nonsense_Mutation p.Q2239* 0.47 TCGA-EE-A2GC-06 17 31350947 31350947 C T ASIC2 Silent p.V427V 0.60 TCGA-EE-A2GC-06 17 3144402 3144402 C T OR1D4 RNA 0.46 TCGA-EE-A2GC-06 17 32612782 32612782 G A CCL11 5'UTR 0.40 TCGA-EE-A2GC-06 17 3324814 3324814 G A OR3A3 Missense_Mutation p.R318Q 0.58 tolerated(0.32) benign(0.01) TCGA-EE-A2GC-06 17 33464139 33464139 G A NLE1 Missense_Mutation p.R237C 0.48 deleterious(0.02) benign(0.053) TCGA-EE-A2GC-06 17 34071945 34071945 T C GAS2L2 Silent p.Q857Q 0.50 TCGA-EE-A2GC-06 17 34266389 34266389 G A LYZL6 5'UTR 0.38 TCGA-EE-A2GC-06 17 3495376 3495376 C G SHPK Missense_Mutation p.G90A 0.45 tolerated(0.12) benign(0.003) TCGA-EE-A2GC-06 17 35798048 35798048 C T TADA2A Intron 0.31 TCGA-EE-A2GC-06 17 36482276 36482276 G A GPR179 3'UTR 0.52 TCGA-EE-A2GC-06 17 36499507 36499507 C T GPR179 Missense_Mutation p.A56T 0.21 tolerated(0.1) benign(0.139) TCGA-EE-A2GC-06 17 36896591 36896591 C T PCGF2 Missense_Mutation p.G22E 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A2GC-06 17 36896592 36896592 C T PCGF2 Missense_Mutation p.G22R 0.26 tolerated(0.08) possibly_damaging(0.812) TCGA-EE-A2GC-06 17 36991429 36991429 G A C17orf98 3'UTR 0.39 TCGA-EE-A2GC-06 17 37187934 37187934 C T CTD-2206N4.2 5'Flank 0.21 TCGA-EE-A2GC-06 17 37369809 37369809 G A STAC2 Missense_Mutation p.P315L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 17 37681031 37681031 G A CDK12 Missense_Mutation p.R1067Q 0.38 possibly_damaging(0.467) TCGA-EE-A2GC-06 17 37762201 37762201 C T NEUROD2 Missense_Mutation p.E218K 0.37 deleterious(0) probably_damaging(0.936) TCGA-EE-A2GC-06 17 37814692 37814692 C T STARD3 Missense_Mutation p.P155L 0.33 tolerated(0.33) possibly_damaging(0.823) TCGA-EE-A2GC-06 17 37828938 37828938 C T PGAP3 3'UTR 0.38 TCGA-EE-A2GC-06 17 37828939 37828939 C T PGAP3 3'UTR 0.38 TCGA-EE-A2GC-06 17 37898921 37898921 C T GRB7 Silent p.G109G 0.40 TCGA-EE-A2GC-06 17 38253337 38253337 C T NR1D1 Silent p.K117K 0.28 TCGA-EE-A2GC-06 17 38812820 38812820 C T KRT222 Missense_Mutation p.R241Q 0.35 deleterious(0.01) benign(0.108) TCGA-EE-A2GC-06 17 38856635 38856635 C T KRT24 Missense_Mutation p.E286K 0.32 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GC-06 17 39156090 39156090 A C KRTAP3-2 Missense_Mutation p.S6A 0.34 tolerated_low_confidence(0.74) benign(0) TCGA-EE-A2GC-06 17 39261747 39261747 G A KRTAP4-9 Missense_Mutation p.R36K 0.43 tolerated(0.13) unknown(0) TCGA-EE-A2GC-06 17 39522799 39522799 G A KRT33B Silent p.L171L 0.42 TCGA-EE-A2GC-06 17 39593660 39593660 G A KRT38 3'UTR 0.34 TCGA-EE-A2GC-06 17 39633394 39633394 G A KRT35 Missense_Mutation p.P428S 0.25 tolerated(0.19) benign(0.322) TCGA-EE-A2GC-06 17 39777023 39777023 G A KRT17 Missense_Mutation p.R357C 0.36 deleterious(0) benign(0.114) TCGA-EE-A2GC-06 17 40936554 40936554 C T WNK4 Missense_Mutation p.S376F 0.22 deleterious(0) unknown(0) TCGA-EE-A2GC-06 17 41019657 41019657 G A AOC4P RNA 0.48 TCGA-EE-A2GC-06 17 41019658 41019658 G A AOC4P RNA 0.47 TCGA-EE-A2GC-06 17 41020169 41020169 G A AOC4P RNA 0.36 TCGA-EE-A2GC-06 17 41055989 41055989 C T G6PC Missense_Mutation p.T91I 0.30 deleterious(0) probably_damaging(0.915) TCGA-EE-A2GC-06 17 43009596 43009596 G A KIF18B Intron 0.48 TCGA-EE-A2GC-06 17 43011361 43011361 G A KIF18B Missense_Mutation p.S331F 0.22 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GC-06 17 43924026 43924026 C T SPPL2C Missense_Mutation p.T585I 0.38 deleterious(0.01) benign(0.013) TCGA-EE-A2GC-06 17 44061192 44061192 C T MAPT Missense_Mutation p.S341F 0.36 deleterious(0.01) possibly_damaging(0.757) TCGA-EE-A2GC-06 17 44109022 44109022 G A KANSL1 Silent p.P1046P 0.35 TCGA-EE-A2GC-06 17 44626399 44626399 C T LRRC37A2 Silent p.I1298I 0.17 TCGA-EE-A2GC-06 17 45361894 45361894 C T ITGB3 Silent p.S149S 0.23 TCGA-EE-A2GC-06 17 4540538 4540538 C T ALOX15 Missense_Mutation p.E275K 0.59 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2GC-06 17 45534160 45534160 C G MRPL45P2 Splice_Site 0.30 TCGA-EE-A2GC-06 17 45914489 45914489 C A LRRC46 3'UTR 0.41 TCGA-EE-A2GC-06 17 46607762 46607762 G A HOXB1 Missense_Mutation p.P169S 0.21 tolerated(0.34) benign(0.001) TCGA-EE-A2GC-06 17 46622343 46622343 C T HOXB2 5'UTR 0.53 TCGA-EE-A2GC-06 17 47115560 47115560 G A IGF2BP1 Silent p.L144L 0.42 TCGA-EE-A2GC-06 17 47233948 47233948 G A B4GALNT2 Missense_Mutation p.D221N 0.34 tolerated(0.35) benign(0.002) TCGA-EE-A2GC-06 17 47587845 47587845 G A NGFR Missense_Mutation p.E214K 0.32 tolerated(0.62) benign(0.015) TCGA-EE-A2GC-06 17 47893179 47893179 C T KAT7 Silent p.T289T 0.32 TCGA-EE-A2GC-06 17 48226561 48226561 C T PPP1R9B Missense_Mutation p.E438K 0.62 deleterious(0) probably_damaging(0.916) TCGA-EE-A2GC-06 17 48266534 48266534 G A COL1A1 Missense_Mutation p.P978S 0.49 unknown(0) TCGA-EE-A2GC-06 17 48450550 48450550 C T MRPL27 5'UTR 0.13 TCGA-EE-A2GC-06 17 48597082 48597082 A G MYCBPAP Missense_Mutation p.T327A 0.39 tolerated(0.2) benign(0.013) TCGA-EE-A2GC-06 17 48694796 48694796 C T CACNA1G Intron 0.46 TCGA-EE-A2GC-06 17 48696344 48696344 C T CACNA1G Missense_Mutation p.S1919F 0.29 deleterious(0.02) possibly_damaging(0.724) TCGA-EE-A2GC-06 17 4889558 4889558 G A CAMTA2 Missense_Mutation p.P10L 0.62 tolerated_low_confidence(0.06) benign(0.032) TCGA-EE-A2GC-06 17 5087191 5087191 G A ZNF594 Missense_Mutation p.H121Y 0.54 deleterious(0.02) benign(0.014) TCGA-EE-A2GC-06 17 5425029 5425029 C T NLRP1 Missense_Mutation p.V1200M 0.51 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GC-06 17 56247058 56247058 C T OR4D2 Silent p.F14F 0.32 TCGA-EE-A2GC-06 17 56272328 56272328 C T EPX Missense_Mutation p.R200W 0.26 deleterious(0.01) benign(0.219) TCGA-EE-A2GC-06 17 56349253 56349253 C T MPO Missense_Mutation p.G598E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 17 57684590 57684590 C T DHX40 3'UTR 0.41 TCGA-EE-A2GC-06 17 59557286 59557286 C T TBX4 Silent p.F249F 0.35 TCGA-EE-A2GC-06 17 60344530 60344530 G A TBC1D3P2 RNA 0.40 TCGA-EE-A2GC-06 17 60813145 60813145 G A MARCH10 Intron 0.50 TCGA-EE-A2GC-06 17 61908868 61908868 C T PSMC5 Silent p.A324A 0.32 TCGA-EE-A2GC-06 17 61910990 61910990 G A SMARCD2 Missense_Mutation p.A425V 0.38 tolerated(0.41) benign(0.318) TCGA-EE-A2GC-06 17 61950972 61950972 C T CSH2 Translation_Start_Site p.M1? 0.17 deleterious(0.01) benign(0.209) TCGA-EE-A2GC-06 17 61995778 61995778 G A GH1 Silent p.S33S 0.37 TCGA-EE-A2GC-06 17 62461626 62461626 G A MILR1 Missense_Mutation p.G20E 0.27 tolerated(0.98) probably_damaging(0.988) TCGA-EE-A2GC-06 17 62781359 62781359 A G hsa-mir-6080 5'Flank 0.27 TCGA-EE-A2GC-06 17 63223527 63223527 G A RGS9 3'UTR 0.45 TCGA-EE-A2GC-06 17 64092741 64092741 G A CEP112 Missense_Mutation p.P218S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 17 66878036 66878036 G A ABCA8 Missense_Mutation p.A1265V 0.43 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A2GC-06 17 68128626 68128626 G A KCNJ16 Missense_Mutation p.G133E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 17 72305507 72305507 G A DNAI2 Missense_Mutation p.D443N 0.16 tolerated(0.11) benign(0.001) TCGA-EE-A2GC-06 17 72518849 72518849 G A CD300LB 3'UTR 0.40 TCGA-EE-A2GC-06 17 72522044 72522044 C T CD300LB Silent p.E108E 0.43 TCGA-EE-A2GC-06 17 72943179 72943179 C T OTOP3 Missense_Mutation p.P410L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 17 73059132 73059132 C T KCTD2 Missense_Mutation p.S261L 0.21 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A2GC-06 17 7323961 7323961 C T SPEM1 Missense_Mutation p.R54C 0.51 deleterious(0) possibly_damaging(0.738) TCGA-EE-A2GC-06 17 73539582 73539583 - GT LLGL2 Frame_Shift_Ins 0.29 TCGA-EE-A2GC-06 17 73565087 73565087 G A LLGL2 Missense_Mutation p.D451N 0.31 tolerated(0.1) benign(0.4) TCGA-EE-A2GC-06 17 73947504 73947504 G A ACOX1 Silent p.L367L 0.32 TCGA-EE-A2GC-06 17 73998186 73998186 C T CDK3 Missense_Mutation p.S93F 0.23 deleterious(0) possibly_damaging(0.579) TCGA-EE-A2GC-06 17 74003610 74003610 G A EVPL Silent p.S1892S 0.32 TCGA-EE-A2GC-06 17 74013831 74013831 G A EVPL Missense_Mutation p.H567Y 0.35 deleterious(0.01) benign(0.081) TCGA-EE-A2GC-06 17 74015007 74015007 C T EVPL Nonsense_Mutation p.W424* 0.47 TCGA-EE-A2GC-06 17 74464865 74464865 G A AANAT Missense_Mutation p.A58T 0.50 tolerated_low_confidence(0.27) benign(0.046) TCGA-EE-A2GC-06 17 75202465 75202465 C T SEC14L1 Missense_Mutation p.P442S 0.42 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2GC-06 17 7578400 7578400 G A TP53 Missense_Mutation p.P177L 0.55 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GC-06 17 7611369 7611369 C T EFNB3 Silent p.S72S 0.33 TCGA-EE-A2GC-06 17 76201792 76201792 C T AFMID Silent p.F251F 0.32 TCGA-EE-A2GC-06 17 76437248 76437248 G A DNAH17 Silent p.F3840F 0.41 TCGA-EE-A2GC-06 17 76794553 76794553 G A USP36 Silent p.F1107F 0.38 TCGA-EE-A2GC-06 17 7710628 7710628 G A DNAH2 Silent p.R3201R 0.56 TCGA-EE-A2GC-06 17 7750890 7750890 C T KDM6B Silent p.P428P 0.36 TCGA-EE-A2GC-06 17 7750924 7750924 C T KDM6B Missense_Mutation p.P440S 0.32 unknown(0) TCGA-EE-A2GC-06 17 78073401 78073401 C T CCDC40 Silent p.L1086L 0.11 TCGA-EE-A2GC-06 17 78336975 78336975 C T RNF213 Missense_Mutation p.S3810F 0.39 possibly_damaging(0.759) TCGA-EE-A2GC-06 17 78358865 78358865 C A RNF213 Missense_Mutation p.F4783L 0.32 possibly_damaging(0.808) TCGA-EE-A2GC-06 17 78858875 78858875 C T RPTOR Missense_Mutation p.S637F 0.55 deleterious(0) possibly_damaging(0.759) TCGA-EE-A2GC-06 17 78897336 78897336 G A RPTOR Missense_Mutation p.D891N 0.41 tolerated(0.42) benign(0.133) TCGA-EE-A2GC-06 17 7915885 7915885 G A GUCY2D Missense_Mutation p.E692K 0.61 deleterious(0.05) probably_damaging(0.965) TCGA-EE-A2GC-06 17 79225062 79225062 G A SLC38A10 Intron 0.39 TCGA-EE-A2GC-06 17 79973189 79973189 C T ASPSCR1 Missense_Mutation p.P531L 0.29 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A2GC-06 17 80010326 80010326 G A GPS1 Silent p.L48L 0.17 TCGA-EE-A2GC-06 17 80019527 80019527 G A DUS1L Missense_Mutation p.R222W 0.40 deleterious(0) possibly_damaging(0.512) TCGA-EE-A2GC-06 17 80616565 80616565 G A RAB40B Silent p.L123L 0.38 TCGA-EE-A2GC-06 17 8770921 8770921 C T PIK3R6 5'UTR 0.70 TCGA-EE-A2GC-06 18 13826435 13826435 G A MC5R Missense_Mutation p.G224E 0.23 tolerated(0.36) possibly_damaging(0.833) TCGA-EE-A2GC-06 18 13885395 13885395 C T MC2R Silent p.E41E 0.33 TCGA-EE-A2GC-06 18 13885413 13885413 G A MC2R Silent p.S35S 0.28 TCGA-EE-A2GC-06 18 19995591 19995591 A - CTAGE1 Frame_Shift_Del p.L729Ffs*27 0.18 TCGA-EE-A2GC-06 18 19997311 19997311 G A CTAGE1 Missense_Mutation p.S155L 0.20 tolerated(0.08) probably_damaging(0.924) TCGA-EE-A2GC-06 18 20564881 20564881 C T RBBP8 Missense_Mutation p.P213S 0.28 tolerated(0.85) benign(0.002) TCGA-EE-A2GC-06 18 22029803 22029803 C T IMPACT Silent p.V260V 0.38 TCGA-EE-A2GC-06 18 25543453 25543453 G A CDH2 Silent p.D794D 0.17 TCGA-EE-A2GC-06 18 28710434 28710434 C T DSC1 3'UTR 0.48 TCGA-EE-A2GC-06 18 28711619 28711619 C T DSC1 Missense_Mutation p.G809R 0.23 tolerated(0.42) probably_damaging(0.991) TCGA-EE-A2GC-06 18 28914104 28914104 G A DSG1 Missense_Mutation p.G315E 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 18 28916386 28916386 C T DSG1 Missense_Mutation p.H359Y 0.24 tolerated(0.07) benign(0.044) TCGA-EE-A2GC-06 18 29044213 29044213 G A DSG3 Missense_Mutation p.G380E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 18 29044228 29044228 C T DSG3 Missense_Mutation p.P385L 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 18 29045359 29045359 G A DSG3 Missense_Mutation p.M450I 0.21 tolerated(1) benign(0) TCGA-EE-A2GC-06 18 29049078 29049078 G A DSG3 Missense_Mutation p.E555K 0.26 deleterious(0.03) benign(0.001) TCGA-EE-A2GC-06 18 29054340 29054340 G A DSG3 Missense_Mutation p.M786I 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2GC-06 18 29122529 29122529 G A DSG2 Missense_Mutation p.G683E 0.35 tolerated(0.5) benign(0.048) TCGA-EE-A2GC-06 18 29339869 29339869 C T SLC25A52 Silent p.K262K 0.50 TCGA-EE-A2GC-06 18 29437927 29437927 G A TRAPPC8 Missense_Mutation p.P922S 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 18 30093442 30093442 G A WBP11P1 RNA 0.53 TCGA-EE-A2GC-06 18 30093443 30093443 G A WBP11P1 RNA 0.53 TCGA-EE-A2GC-06 18 30847258 30847258 C T CCDC178 Missense_Mutation p.E394K 0.47 tolerated(0.24) benign(0.023) TCGA-EE-A2GC-06 18 31599502 31599502 C T NOL4 Missense_Mutation p.G279E 0.42 tolerated(0.19) possibly_damaging(0.789) TCGA-EE-A2GC-06 18 32398222 32398222 G A DTNA Silent p.Q268Q 0.22 TCGA-EE-A2GC-06 18 32398223 32398223 G A DTNA Missense_Mutation p.D269N 0.22 tolerated(0.34) benign(0.014) TCGA-EE-A2GC-06 18 32837906 32837906 A G ZSCAN30 Intron 0.42 TCGA-EE-A2GC-06 18 34753042 34753042 C T KIAA1328 Silent p.S507S 0.44 TCGA-EE-A2GC-06 18 34753043 34753043 C T KIAA1328 Missense_Mutation p.R508W 0.44 tolerated(0.06) benign(0.135) TCGA-EE-A2GC-06 18 40695513 40695513 A G RIT2 5'UTR 0.15 TCGA-EE-A2GC-06 18 40854289 40854289 C T SYT4 Nonsense_Mutation p.W35* 0.28 TCGA-EE-A2GC-06 18 42281737 42281737 C T SETBP1 Silent p.S142S 0.43 TCGA-EE-A2GC-06 18 43221253 43221253 C G SLC14A2 Missense_Mutation p.I357M 0.20 tolerated(0.08) benign(0.38) TCGA-EE-A2GC-06 18 44560283 44560283 C T TCEB3B Silent p.P451P 0.29 TCGA-EE-A2GC-06 18 46468879 46468879 C T SMAD7 Silent p.T238T 0.21 TCGA-EE-A2GC-06 18 47008561 47008561 G A C18orf32 3'UTR 0.20 TCGA-EE-A2GC-06 18 47352939 47352939 T G MYO5B Missense_Mutation p.M1817L 0.41 tolerated(0.55) benign(0.001) TCGA-EE-A2GC-06 18 47428972 47428972 C T MYO5B Missense_Mutation p.D935N 0.27 tolerated(0.2) benign(0.02) TCGA-EE-A2GC-06 18 47480796 47480796 C T MYO5B Missense_Mutation p.G519R 0.42 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GC-06 18 47566675 47566675 A T MYO5B Missense_Mutation p.Y50N 0.41 deleterious(0.01) possibly_damaging(0.655) TCGA-EE-A2GC-06 18 47765069 47765069 C T CCDC11 Missense_Mutation p.R407Q 0.45 deleterious(0) benign(0.2) TCGA-EE-A2GC-06 18 47911610 47911610 T G SKA1 Silent p.P112P 0.23 TCGA-EE-A2GC-06 18 50450136 50450136 G A DCC Missense_Mutation p.E253K 0.53 tolerated(0.9) benign(0.177) TCGA-EE-A2GC-06 18 50866254 50866254 G A DCC Missense_Mutation p.R779Q 0.18 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GC-06 18 50912476 50912476 T A DCC Missense_Mutation p.L808H 0.25 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GC-06 18 50918214 50918214 C T DCC Missense_Mutation p.T882I 0.41 deleterious(0) probably_damaging(0.927) TCGA-EE-A2GC-06 18 50937012 50937012 G A DCC Silent p.L1042L 0.44 TCGA-EE-A2GC-06 18 54339790 54339790 G A WDR7 Missense_Mutation p.R15Q 0.53 tolerated(0.08) benign(0.104) TCGA-EE-A2GC-06 18 54424156 54424156 C T WDR7 Missense_Mutation p.P778S 0.19 tolerated(0.12) probably_damaging(0.937) TCGA-EE-A2GC-06 18 54424157 54424157 C T WDR7 Missense_Mutation p.P778L 0.19 tolerated(0.05) possibly_damaging(0.621) TCGA-EE-A2GC-06 18 55024564 55024564 C T ST8SIA3 Silent p.A241A 0.32 TCGA-EE-A2GC-06 18 55319961 55319961 C T ATP8B1 Missense_Mutation p.D1006N 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 18 56274597 56274597 C T ALPK2 Missense_Mutation p.E62K 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 18 57014785 57014785 G A LMAN1 Missense_Mutation p.S261F 0.57 tolerated(0.08) probably_damaging(0.946) TCGA-EE-A2GC-06 18 59157870 59157870 T A CDH20 Silent p.L28L 0.51 TCGA-EE-A2GC-06 18 59483237 59483237 C T RNF152 Missense_Mutation p.E154K 0.46 tolerated(0.4) probably_damaging(0.971) TCGA-EE-A2GC-06 18 59483735 59483735 G A RNF152 5'UTR 0.28 TCGA-EE-A2GC-06 18 61233848 61233848 G A SERPINB12 Silent p.R274R 0.36 TCGA-EE-A2GC-06 18 61261698 61261698 A G SERPINB13 Silent p.E194E 0.21 TCGA-EE-A2GC-06 18 61304960 61304960 G A SERPINB4 Missense_Mutation p.S389F 0.55 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2GC-06 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.59 deleterious(0.01) possibly_damaging(0.663) TCGA-EE-A2GC-06 18 61324626 61324626 G A SERPINB3 Missense_Mutation p.P164S 0.43 tolerated(0.11) possibly_damaging(0.599) TCGA-EE-A2GC-06 18 61377546 61377546 G A SERPINB11 Missense_Mutation p.S40N 0.32 tolerated(0.1) benign(0.03) TCGA-EE-A2GC-06 18 61587039 61587039 G A SERPINB10 Missense_Mutation p.M130I 0.15 tolerated(0.49) benign(0.002) TCGA-EE-A2GC-06 18 61620722 61620722 C T HMSD Silent p.F11F 0.50 TCGA-EE-A2GC-06 18 65180536 65180536 G A DSEL Missense_Mutation p.S447F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 18 6971939 6971939 C T LAMA1 Silent p.L2272L 0.12 TCGA-EE-A2GC-06 18 70532848 70532848 G A NETO1 Intron 0.50 TCGA-EE-A2GC-06 18 72234659 72234659 C T CNDP1 Silent p.F249F 0.15 TCGA-EE-A2GC-06 18 7231809 7231809 C T LRRC30 Missense_Mutation p.P225S 0.31 deleterious(0) benign(0.13) TCGA-EE-A2GC-06 18 74153874 74153874 G A ZNF516 Silent p.T379T 0.44 TCGA-EE-A2GC-06 18 76870473 76870473 C T ATP9B Nonsense_Mutation p.Q138* 0.35 TCGA-EE-A2GC-06 19 10071003 10071003 G A COL5A3 3'UTR 0.40 TCGA-EE-A2GC-06 19 10124124 10124124 A G RDH8 Missense_Mutation p.Q4R 0.40 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A2GC-06 19 1013325 1013325 G A TMEM259 Silent p.I174I 0.31 TCGA-EE-A2GC-06 19 10405091 10405091 G A ICAM5 Missense_Mutation p.D669N 0.29 tolerated(0.06) probably_damaging(0.974) TCGA-EE-A2GC-06 19 10600376 10600376 C T KEAP1 Silent p.E493E 0.34 TCGA-EE-A2GC-06 19 10685607 10685607 G A AP1M2 Silent p.I382I 0.47 TCGA-EE-A2GC-06 19 11100040 11100040 C T SMARCA4 Missense_Mutation p.P389L 0.33 probably_damaging(0.997) TCGA-EE-A2GC-06 19 11304039 11304039 G A KANK2 Silent p.P239P 0.41 TCGA-EE-A2GC-06 19 11304040 11304040 G A KANK2 Missense_Mutation p.P239L 0.41 deleterious(0.01) benign(0.22) TCGA-EE-A2GC-06 19 11338069 11338069 C T DOCK6 Missense_Mutation p.D967N 0.69 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2GC-06 19 11505065 11505065 G A RGL3 3'UTR 0.67 TCGA-EE-A2GC-06 19 11892195 11892195 G A ZNF441 Missense_Mutation p.R519Q 0.44 tolerated(0.96) probably_damaging(0.945) TCGA-EE-A2GC-06 19 11917700 11917700 C T ZNF491 Missense_Mutation p.S311F 0.67 tolerated(0.57) benign(0.007) TCGA-EE-A2GC-06 19 12800063 12800063 G A FBXW9 Silent p.D448D 0.59 TCGA-EE-A2GC-06 19 13418658 13418658 C T CACNA1A Missense_Mutation p.D642N 0.30 probably_damaging(0.982) TCGA-EE-A2GC-06 19 1507247 1507247 G A ADAMTSL5 Silent p.L282L 0.34 TCGA-EE-A2GC-06 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.53 TCGA-EE-A2GC-06 19 15807246 15807246 G A CYP4F12 Missense_Mutation p.D441N 0.55 tolerated(0.4) benign(0.355) TCGA-EE-A2GC-06 19 15852646 15852646 G A OR10H3 Nonsense_Mutation p.W148* 0.63 TCGA-EE-A2GC-06 19 16496019 16496019 G A EPS15L1 Missense_Mutation p.P723L 0.36 tolerated(0.34) benign(0.008) TCGA-EE-A2GC-06 19 16860716 16860716 C T NWD1 Silent p.L421L 0.36 TCGA-EE-A2GC-06 19 16910856 16910856 G A NWD1 Missense_Mutation p.V1207M 0.38 tolerated(0.17) benign(0.309) TCGA-EE-A2GC-06 19 16977229 16977229 C T SIN3B Silent p.F588F 0.39 TCGA-EE-A2GC-06 19 17001318 17001318 G A F2RL3 Silent p.R348R 0.23 TCGA-EE-A2GC-06 19 1785695 1785695 C T ATP8B3 Missense_Mutation p.E1056K 0.45 tolerated(1) benign(0.02) TCGA-EE-A2GC-06 19 1881283 1881283 G A ABHD17A Missense_Mutation p.R95C 0.36 deleterious(0) benign(0.427) TCGA-EE-A2GC-06 19 19431306 19431306 C T SUGP1 5'UTR 0.40 TCGA-EE-A2GC-06 19 19763426 19763426 T C ATP13A1 Missense_Mutation p.E735G 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2GC-06 19 1978940 1978940 G A CSNK1G2 Missense_Mutation p.G177E 0.37 deleterious(0.02) possibly_damaging(0.469) TCGA-EE-A2GC-06 19 20188933 20188933 A T ZNF90 5'UTR 0.40 TCGA-EE-A2GC-06 19 20215134 20215134 G A ZNF90 Silent p.R30R 0.35 TCGA-EE-A2GC-06 19 20308159 20308159 G A ZNF486 Missense_Mutation p.E214K 0.32 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A2GC-06 19 20736555 20736555 C T ZNF737 Silent p.R30R 0.31 TCGA-EE-A2GC-06 19 21239839 21239839 T A ZNF430 Missense_Mutation p.F242Y 0.33 tolerated(0.05) possibly_damaging(0.518) TCGA-EE-A2GC-06 19 22270897 22270897 G A ZNF257 Silent p.K115K 0.41 TCGA-EE-A2GC-06 19 22362772 22362772 G A ZNF676 Missense_Mutation p.H583Y 0.29 deleterious(0.05) probably_damaging(0.923) TCGA-EE-A2GC-06 19 22363177 22363177 G A ZNF676 Missense_Mutation p.P448S 0.40 deleterious(0.05) benign(0.098) TCGA-EE-A2GC-06 19 22363612 22363612 G A ZNF676 Missense_Mutation p.H303Y 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2GC-06 19 22847931 22847931 A C ZNF492 Missense_Mutation p.N487T 0.36 tolerated(0.22) benign(0.017) TCGA-EE-A2GC-06 19 22939275 22939275 G A ZNF99 3'Flank 0.50 TCGA-EE-A2GC-06 19 22941052 22941052 C T ZNF99 Missense_Mutation p.M553I 0.33 tolerated(0.35) benign(0.002) TCGA-EE-A2GC-06 19 22941862 22941862 T A ZNF99 Missense_Mutation p.K283N 0.36 deleterious(0.01) probably_damaging(0.923) TCGA-EE-A2GC-06 19 23542635 23542635 G A ZNF91 Missense_Mutation p.P1049L 0.24 deleterious(0.05) probably_damaging(0.977) TCGA-EE-A2GC-06 19 2408447 2408447 C T TMPRSS9 Silent p.I278I 0.35 TCGA-EE-A2GC-06 19 2422192 2422192 G A TMPRSS9 Missense_Mutation p.G798E 0.34 tolerated(0.07) benign(0.005) TCGA-EE-A2GC-06 19 2717175 2717175 G A DIRAS1 3'UTR 0.48 TCGA-EE-A2GC-06 19 2811680 2811680 C T THOP1 Missense_Mutation p.S619F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 19 2873574 2873574 C T ZNF556 Silent p.L28L 0.41 TCGA-EE-A2GC-06 19 3005910 3005910 G A TLE2 Silent p.I519I 0.41 TCGA-EE-A2GC-06 19 3019644 3019644 G A TLE2 Intron 0.42 TCGA-EE-A2GC-06 19 30935403 30935403 G A ZNF536 Missense_Mutation p.E312K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 19 30935917 30935917 G A ZNF536 Missense_Mutation p.G483E 0.31 tolerated(0.26) possibly_damaging(0.894) TCGA-EE-A2GC-06 19 31770483 31770483 C A TSHZ3 Missense_Mutation p.M72I 0.39 deleterious(0.03) benign(0.008) TCGA-EE-A2GC-06 19 33355115 33355115 G A SLC7A9 Missense_Mutation p.P122L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 19 33617589 33617589 C T GPATCH1 Silent p.S905S 0.25 TCGA-EE-A2GC-06 19 33617590 33617590 C T GPATCH1 Nonsense_Mutation p.Q906* 0.24 TCGA-EE-A2GC-06 19 36279052 36279052 C T ARHGAP33 Silent p.S1034S 0.33 TCGA-EE-A2GC-06 19 36293158 36293158 G A PRODH2 Missense_Mutation p.P454L 0.32 deleterious(0) possibly_damaging(0.601) TCGA-EE-A2GC-06 19 36370456 36370456 C T APLP1 3'UTR 0.36 TCGA-EE-A2GC-06 19 36370457 36370457 C T APLP1 3'UTR 0.50 TCGA-EE-A2GC-06 19 36575559 36575559 C T WDR62 Missense_Mutation p.H519Y 0.41 tolerated(0.19) benign(0.076) TCGA-EE-A2GC-06 19 37441389 37441389 C T ZNF568 Missense_Mutation p.P445L 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GC-06 19 37643682 37643682 C T ZNF585A Silent p.Q318Q 0.36 TCGA-EE-A2GC-06 19 37677649 37677649 G A ZNF585B Missense_Mutation p.H264Y 0.38 deleterious(0) benign(0.218) TCGA-EE-A2GC-06 19 38028636 38028636 G A ZNF793 Missense_Mutation p.R359K 0.40 deleterious(0.03) benign(0.199) TCGA-EE-A2GC-06 19 38126146 38126146 A T ZFP30 Missense_Mutation p.H432Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 19 38682858 38682858 C T SIPA1L3 Missense_Mutation p.P1502S 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 19 38682859 38682859 C T SIPA1L3 Missense_Mutation p.P1502L 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 19 38799966 38799966 G A YIF1B Silent p.I100I 0.35 TCGA-EE-A2GC-06 19 38852894 38852894 G A CATSPERG Silent p.A713A 0.58 TCGA-EE-A2GC-06 19 38893811 38893811 G A FAM98C Silent p.A6A 0.30 TCGA-EE-A2GC-06 19 38893812 38893812 G A FAM98C Missense_Mutation p.E7K 0.30 deleterious(0.04) benign(0.027) TCGA-EE-A2GC-06 19 39330888 39330888 G A HNRNPL Missense_Mutation p.P361S 0.50 tolerated(0.17) benign(0.012) TCGA-EE-A2GC-06 19 39991276 39991276 G A DLL3 Missense_Mutation p.E125K 0.26 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GC-06 19 40395813 40395813 C T FCGBP Nonsense_Mutation p.W2528* 0.17 TCGA-EE-A2GC-06 19 40405985 40405985 C T FCGBP Missense_Mutation p.E1621K 0.47 unknown(0) TCGA-EE-A2GC-06 19 40541451 40541451 G A ZNF780B Missense_Mutation p.H439Y 0.38 deleterious(0.01) possibly_damaging(0.684) TCGA-EE-A2GC-06 19 4054681 4054681 G A ZBTB7A Missense_Mutation p.P184S 0.50 tolerated(0.07) benign(0.354) TCGA-EE-A2GC-06 19 40901190 40901190 G A PRX Silent p.L1023L 0.38 TCGA-EE-A2GC-06 19 41119848 41119848 C T LTBP4 Missense_Mutation p.L929F 0.33 tolerated(0.21) possibly_damaging(0.481) TCGA-EE-A2GC-06 19 41188839 41188839 C T NUMBL Missense_Mutation p.G95E 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 19 41383100 41383100 G A CYP2A7 Missense_Mutation p.P386S 0.34 deleterious(0.01) possibly_damaging(0.553) TCGA-EE-A2GC-06 19 41596460 41596460 C T CYP2A13 Silent p.S215S 0.35 TCGA-EE-A2GC-06 19 42187798 42187798 C T CEACAM7 Silent p.K208K 0.31 TCGA-EE-A2GC-06 19 42265234 42265234 G A CEACAM6 Missense_Mutation p.E168K 0.41 deleterious(0.01) benign(0.18) TCGA-EE-A2GC-06 19 4249240 4249240 G A CCDC94 Missense_Mutation p.D14N 0.35 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GC-06 19 4254406 4254406 C T CCDC94 Nonsense_Mutation p.Q109* 0.37 TCGA-EE-A2GC-06 19 42584105 42584105 G A ZNF574 Silent p.E449E 0.28 TCGA-EE-A2GC-06 19 4280097 4280097 G A SHD Missense_Mutation p.G13S 0.33 tolerated(0.92) benign(0.057) TCGA-EE-A2GC-06 19 42814694 42814694 G A PRR19 Silent p.L291L 0.36 TCGA-EE-A2GC-06 19 42880018 42880018 C T MEGF8 Silent p.P2476P 0.55 TCGA-EE-A2GC-06 19 42880019 42880019 C T MEGF8 Missense_Mutation p.R2477W 0.55 tolerated(0.2) benign(0.004) TCGA-EE-A2GC-06 19 43383755 43383755 C T PSG1 5'UTR 0.35 TCGA-EE-A2GC-06 19 43414942 43414942 A G PSG6 Silent p.L166L 0.35 TCGA-EE-A2GC-06 19 43441217 43441217 G A PSG7 Silent p.L4L 0.34 TCGA-EE-A2GC-06 19 44030295 44030295 C T ETHE1 Intron 0.33 TCGA-EE-A2GC-06 19 4429766 4429766 C T CHAF1A Missense_Mutation p.S612F 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 19 44680638 44680638 C T ZNF226 Missense_Mutation p.S408F 0.22 tolerated(0.11) probably_damaging(0.996) TCGA-EE-A2GC-06 19 44681340 44681340 C T ZNF226 Missense_Mutation p.P642L 0.40 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 19 44832211 44832211 G A ZNF112 Missense_Mutation p.S706L 0.33 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2GC-06 19 44934400 44934400 C T ZNF229 Missense_Mutation p.G186R 0.38 tolerated(0.11) benign(0.027) TCGA-EE-A2GC-06 19 4512668 4512668 G A PLIN4 Missense_Mutation p.T421I 0.41 tolerated(0.09) benign(0.434) TCGA-EE-A2GC-06 19 4529273 4529273 G A PLIN5 Intron 0.38 TCGA-EE-A2GC-06 19 45406515 45406515 C T TOMM40 3'UTR 0.26 TCGA-EE-A2GC-06 19 45406516 45406516 C T TOMM40 3'UTR 0.25 TCGA-EE-A2GC-06 19 45490560 45490560 C T CLPTM1 Missense_Mutation p.S306F 0.16 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2GC-06 19 45975997 45975997 G A FOSB Silent p.K248K 0.27 TCGA-EE-A2GC-06 19 46094627 46094627 G A GPR4 Silent p.T166T 0.31 TCGA-EE-A2GC-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.33 TCGA-EE-A2GC-06 19 46280937 46280937 G A DMPK Silent p.I300I 0.37 TCGA-EE-A2GC-06 19 46393723 46393723 C T MYPOP 3'UTR 0.50 TCGA-EE-A2GC-06 19 4683486 4683486 C T DPP9 Intron 0.44 TCGA-EE-A2GC-06 19 46974164 46974164 C A PNMAL1 Missense_Mutation p.L43F 0.36 deleterious(0) possibly_damaging(0.765) TCGA-EE-A2GC-06 19 47342728 47342728 G A AP2S1 Silent p.F87F 0.36 TCGA-EE-A2GC-06 19 49104393 49104393 G A FAM83E Silent p.P470P 0.21 TCGA-EE-A2GC-06 19 49129253 49129253 C T SPHK2 Missense_Mutation p.P49S 0.38 tolerated(0.07) possibly_damaging(0.829) TCGA-EE-A2GC-06 19 49334994 49334994 C T HSD17B14 Silent p.E100E 0.43 TCGA-EE-A2GC-06 19 49337584 49337584 G A HSD17B14 Silent p.L53L 0.33 TCGA-EE-A2GC-06 19 49611065 49611065 C T SNRNP70 Missense_Mutation p.P227S 0.29 tolerated(0.1) benign(0.092) TCGA-EE-A2GC-06 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.37 TCGA-EE-A2GC-06 19 50961874 50961874 C T MYBPC2 Missense_Mutation p.P790L 0.24 tolerated(1) benign(0.047) TCGA-EE-A2GC-06 19 51129204 51129204 G A SYT3 Missense_Mutation p.T451I 0.15 deleterious(0.01) possibly_damaging(0.835) TCGA-EE-A2GC-06 19 51170630 51170630 G A SHANK1 Silent p.P1529P 0.30 TCGA-EE-A2GC-06 19 51219589 51219589 C T SHANK1 Silent p.E134E 0.22 TCGA-EE-A2GC-06 19 51485696 51485696 G A KLK7 5'UTR 0.56 TCGA-EE-A2GC-06 19 51485697 51485697 G A KLK7 5'UTR 0.56 TCGA-EE-A2GC-06 19 51995005 51995005 C T SIGLEC12 Missense_Mutation p.E560K 0.33 tolerated(0.08) possibly_damaging(0.471) TCGA-EE-A2GC-06 19 52001350 52001350 C T SIGLEC12 Missense_Mutation p.E443K 0.29 tolerated(0.11) possibly_damaging(0.773) TCGA-EE-A2GC-06 19 52033111 52033111 C T SIGLEC6 Silent p.L293L 0.28 TCGA-EE-A2GC-06 19 52033208 52033208 G A SIGLEC6 Missense_Mutation p.S261F 0.49 tolerated(0.08) benign(0.169) TCGA-EE-A2GC-06 19 52034562 52034562 G A SIGLEC6 Silent p.F93F 0.35 TCGA-EE-A2GC-06 19 52147170 52147170 C T SIGLEC14 Missense_Mutation p.A292T 0.36 tolerated(1) possibly_damaging(0.474) TCGA-EE-A2GC-06 19 52149074 52149074 G A SIGLEC14 Nonsense_Mutation p.Q221* 0.30 TCGA-EE-A2GC-06 19 5220054 5220054 G A PTPRS Missense_Mutation p.H1221Y 0.40 tolerated(0.06) benign(0.065) TCGA-EE-A2GC-06 19 52376906 52376906 C T ZNF577 Missense_Mutation p.G113R 0.29 tolerated(0.44) benign(0.005) TCGA-EE-A2GC-06 19 52529157 52529157 C T ZNF614 5'UTR 0.60 TCGA-EE-A2GC-06 19 52660188 52660188 C T ZNF836 Missense_Mutation p.E250K 0.39 tolerated(0.19) probably_damaging(0.969) TCGA-EE-A2GC-06 19 52887533 52887533 C T ZNF880 Missense_Mutation p.H234Y 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GC-06 19 53269038 53269038 C T ZNF600 Silent p.R657R 0.37 TCGA-EE-A2GC-06 19 53473843 53473843 C T ZNF702P RNA 0.39 TCGA-EE-A2GC-06 19 53762278 53762278 G A VN1R2 Nonsense_Mutation p.W217* 0.37 TCGA-EE-A2GC-06 19 53958194 53958194 C T ZNF761 RNA 0.37 TCGA-EE-A2GC-06 19 54137909 54137909 G A DPRX Silent p.S51S 0.20 TCGA-EE-A2GC-06 19 54224381 54224381 C T MIR517B RNA 0.29 TCGA-EE-A2GC-06 19 54515555 54515555 G A CACNG6 3'UTR 0.41 TCGA-EE-A2GC-06 19 54561757 54561757 G A VSTM1 Missense_Mutation p.S53F 0.18 tolerated(0.86) benign(0.005) TCGA-EE-A2GC-06 19 54598537 54598537 G A OSCAR 3'UTR 0.43 TCGA-EE-A2GC-06 19 54802206 54802206 G A LILRA3 Missense_Mutation p.L328F 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A2GC-06 19 54850384 54850384 C T LILRA4 5'UTR 0.35 TCGA-EE-A2GC-06 19 55048129 55048129 C T KIR3DX1 Silent p.P232P 0.33 TCGA-EE-A2GC-06 19 55105938 55105938 G A LILRA1 Missense_Mutation p.A23T 0.28 tolerated(0.06) benign(0.178) TCGA-EE-A2GC-06 19 55143453 55143453 C T LILRB1 Silent p.I142I 0.33 TCGA-EE-A2GC-06 19 55146718 55146718 C A LILRB1 Missense_Mutation p.P524Q 0.36 deleterious(0.03) benign(0.037) TCGA-EE-A2GC-06 19 55147037 55147037 G A LILRB1 Missense_Mutation p.D544N 0.41 deleterious(0.03) possibly_damaging(0.755) TCGA-EE-A2GC-06 19 55148338 55148338 G A LILRB1 3'UTR 0.37 TCGA-EE-A2GC-06 19 55176615 55176615 G A LILRB4 Silent p.G247G 0.30 TCGA-EE-A2GC-06 19 55220652 55220652 C T AC098784.2 3'Flank 0.37 TCGA-EE-A2GC-06 19 55285022 55285022 C T KIR2DL1 Missense_Mutation p.S103F 0.70 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A2GC-06 19 55290064 55290064 G A KIR2DL1 Missense_Mutation p.G222E 0.58 tolerated(0.12) benign(0.419) TCGA-EE-A2GC-06 19 55331457 55331457 C T KIR3DL1 Silent p.I215I 0.60 TCGA-EE-A2GC-06 19 55435095 55435095 G A NLRP7 3'UTR 0.40 TCGA-EE-A2GC-06 19 55447713 55447713 G T NLRP7 Missense_Mutation p.A739E 0.44 tolerated(0.84) benign(0) TCGA-EE-A2GC-06 19 55451638 55451638 C T NLRP7 Silent p.G183G 0.37 TCGA-EE-A2GC-06 19 55967752 55967752 G A ISOC2 Silent p.F34F 0.17 TCGA-EE-A2GC-06 19 56113487 56113487 C T ZNF524 Silent p.T3T 0.40 TCGA-EE-A2GC-06 19 56303782 56303782 G A NLRP11 Silent p.L800L 0.38 TCGA-EE-A2GC-06 19 56321348 56321348 C T NLRP11 Missense_Mutation p.G210S 0.34 tolerated(0.35) benign(0.137) TCGA-EE-A2GC-06 19 56424493 56424493 C T NLRP13 Silent p.T230T 0.34 TCGA-EE-A2GC-06 19 56463966 56463966 G A NLRP8 Missense_Mutation p.E144K 0.27 tolerated(0.21) benign(0.021) TCGA-EE-A2GC-06 19 56467267 56467267 G A NLRP8 Missense_Mutation p.E615K 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 19 56490764 56490764 G A NLRP8 Missense_Mutation p.E961K 0.40 tolerated(0.38) benign(0.014) TCGA-EE-A2GC-06 19 56539218 56539218 G A NLRP5 Nonsense_Mutation p.W540* 0.31 TCGA-EE-A2GC-06 19 56539295 56539295 C T NLRP5 Missense_Mutation p.H566Y 0.22 tolerated(0.06) possibly_damaging(0.642) TCGA-EE-A2GC-06 19 56701654 56701654 G A ZSCAN5B Missense_Mutation p.P344S 0.42 tolerated(0.18) possibly_damaging(0.717) TCGA-EE-A2GC-06 19 56895388 56895388 G A ZNF582 Silent p.T466T 0.35 TCGA-EE-A2GC-06 19 56896278 56896278 G A ZNF582 Missense_Mutation p.P170S 0.29 tolerated(0.25) benign(0.036) TCGA-EE-A2GC-06 19 56896388 56896388 C T ZNF582 Missense_Mutation p.G133E 0.35 tolerated(0.4) benign(0.003) TCGA-EE-A2GC-06 19 56953341 56953341 C T ZNF667 Silent p.R341R 0.42 TCGA-EE-A2GC-06 19 57029918 57029918 G A ZNF471 Silent p.T76T 0.36 TCGA-EE-A2GC-06 19 57133999 57133999 C T ZNF71 Silent p.I448I 0.40 TCGA-EE-A2GC-06 19 57286126 57286126 C T ZIM2 Missense_Mutation p.R505Q 0.30 tolerated(0.47) benign(0.106) TCGA-EE-A2GC-06 19 57286131 57286131 G A ZIM2 Silent p.F503F 0.37 TCGA-EE-A2GC-06 19 57286165 57286165 C T ZIM2 Missense_Mutation p.R492K 0.19 tolerated(1) benign(0.07) TCGA-EE-A2GC-06 19 5729904 5729904 G A CATSPERD Missense_Mutation p.M75I 0.40 tolerated(0.13) benign(0.019) TCGA-EE-A2GC-06 19 57325036 57325036 C T PEG3 3'UTR 0.27 TCGA-EE-A2GC-06 19 57326059 57326059 C T PEG3 Missense_Mutation p.D1251N 0.22 tolerated(0.55) benign(0.005) TCGA-EE-A2GC-06 19 57327369 57327369 T C PEG3 Missense_Mutation p.N814S 0.40 tolerated(0.64) benign(0.012) TCGA-EE-A2GC-06 19 57642699 57642699 G A USP29 Missense_Mutation p.G886R 0.33 deleterious(0.01) benign(0.261) TCGA-EE-A2GC-06 19 57666724 57666724 C T DUXA Missense_Mutation p.R152Q 0.37 tolerated(0.13) benign(0.024) TCGA-EE-A2GC-06 19 57743452 57743452 G A AURKC Silent p.G52G 0.26 TCGA-EE-A2GC-06 19 58189903 58189903 C T ZSCAN4 Missense_Mutation p.S311L 0.34 tolerated(0.48) benign(0.078) TCGA-EE-A2GC-06 19 58216322 58216322 G A ZNF154 Missense_Mutation p.A20V 0.33 deleterious(0) benign(0.303) TCGA-EE-A2GC-06 19 58421404 58421404 G A ZNF417 Missense_Mutation p.T81I 0.30 tolerated(0.08) benign(0.105) TCGA-EE-A2GC-06 19 58438246 58438246 A C ZNF418 Missense_Mutation p.F435V 0.34 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GC-06 19 58867538 58867538 G A ZNF497 Silent p.H488H 0.22 TCGA-EE-A2GC-06 19 59067409 59067409 G A UBE2M 3'UTR 0.32 TCGA-EE-A2GC-06 19 6906464 6906464 G A EMR1 Missense_Mutation p.E324K 0.32 tolerated(0.05) benign(0.178) TCGA-EE-A2GC-06 19 7521226 7521226 C T ARHGEF18 Silent p.I518I 0.36 TCGA-EE-A2GC-06 19 7614993 7614993 C T PNPLA6 Silent p.F612F 0.37 TCGA-EE-A2GC-06 19 7998441 7998441 A C TIMM44 Missense_Mutation p.V233G 0.28 deleterious(0) possibly_damaging(0.821) TCGA-EE-A2GC-06 19 8176036 8176036 G A FBN3 Silent p.L1372L 0.27 TCGA-EE-A2GC-06 19 8576329 8576329 G A ZNF414 Intron 0.18 TCGA-EE-A2GC-06 19 8604837 8604837 C T MYO1F Silent p.K562K 0.45 TCGA-EE-A2GC-06 19 8841876 8841876 C T OR2Z1 Silent p.I162I 0.43 TCGA-EE-A2GC-06 19 8953432 8953432 C T MBD3L1 Silent p.I26I 0.42 TCGA-EE-A2GC-06 19 897435 897435 C T R3HDM4 3'UTR 0.38 TCGA-EE-A2GC-06 19 8993443 8993443 C T MUC16 Silent p.L13882L 0.41 TCGA-EE-A2GC-06 19 9008192 9008192 C T MUC16 Silent p.R13120R 0.36 TCGA-EE-A2GC-06 19 9008193 9008193 C T MUC16 Missense_Mutation p.R13120Q 0.36 probably_damaging(0.966) TCGA-EE-A2GC-06 19 9024193 9024193 C T MUC16 Missense_Mutation p.G12360E 0.29 possibly_damaging(0.679) TCGA-EE-A2GC-06 19 9027222 9027222 G A MUC16 Missense_Mutation p.P12222S 0.25 benign(0.095) TCGA-EE-A2GC-06 19 9046853 9046853 G A MUC16 Missense_Mutation p.P11593L 0.35 benign(0) TCGA-EE-A2GC-06 19 9048058 9048058 C T MUC16 Missense_Mutation p.M11191I 0.44 benign(0) TCGA-EE-A2GC-06 19 9048675 9048675 C T MUC16 Missense_Mutation p.G10986R 0.37 benign(0.092) TCGA-EE-A2GC-06 19 9057605 9057605 C T MUC16 Missense_Mutation p.M9947I 0.40 unknown(0) TCGA-EE-A2GC-06 19 9061493 9061493 C T MUC16 Silent p.G8651G 0.33 TCGA-EE-A2GC-06 19 9061789 9061789 G A MUC16 Missense_Mutation p.P8553S 0.15 unknown(0) TCGA-EE-A2GC-06 19 9066175 9066175 C T MUC16 Missense_Mutation p.E7091K 0.31 unknown(0) TCGA-EE-A2GC-06 19 9068160 9068160 G A MUC16 Missense_Mutation p.T6429I 0.35 unknown(0) TCGA-EE-A2GC-06 19 9071105 9071105 C T MUC16 Silent p.S5447S 0.39 TCGA-EE-A2GC-06 19 9071673 9071673 G A MUC16 Missense_Mutation p.S5258F 0.32 unknown(0) TCGA-EE-A2GC-06 19 9073701 9073701 G A MUC16 Missense_Mutation p.S4582L 0.30 unknown(0) TCGA-EE-A2GC-06 19 9074883 9074883 G A MUC16 Missense_Mutation p.P4188L 0.32 unknown(0) TCGA-EE-A2GC-06 19 9076887 9076887 G A MUC16 Missense_Mutation p.S3520L 0.35 unknown(0) TCGA-EE-A2GC-06 19 9088356 9088356 G A MUC16 Silent p.I1153I 0.34 TCGA-EE-A2GC-06 19 9212964 9212964 C T OR7G2 Missense_Mutation p.G340E 0.33 tolerated_low_confidence(0.94) benign(0.148) TCGA-EE-A2GC-06 19 9270815 9270815 C T ZNF317 Missense_Mutation p.S165F 0.31 tolerated(0.36) possibly_damaging(0.629) TCGA-EE-A2GC-06 19 9270816 9270816 C T ZNF317 Silent p.S165S 0.31 TCGA-EE-A2GC-06 19 9324628 9324628 C T OR7D4 Missense_Mutation p.D296N 0.10 deleterious(0.01) benign(0.32) TCGA-EE-A2GC-06 19 9324872 9324872 G A OR7D4 Silent p.I214I 0.33 TCGA-EE-A2GC-06 19 971922 971922 C T ARID3A Missense_Mutation p.P547S 0.37 tolerated(0.13) unknown(0) TCGA-EE-A2GC-06 19 9801330 9801330 C T ZNF812 Silent p.G283G 0.32 TCGA-EE-A2GC-06 1 100964947 100964947 C T CDC14A 3'UTR 0.15 TCGA-EE-A2GC-06 1 101200150 101200150 C T VCAM1 Missense_Mutation p.P629S 0.38 tolerated(0.09) benign(0.277) TCGA-EE-A2GC-06 1 10161224 10161224 C T UBE4B Nonsense_Mutation p.R136* 0.38 TCGA-EE-A2GC-06 1 103496800 103496800 C T COL11A1 Missense_Mutation p.G218R 0.26 probably_damaging(1) TCGA-EE-A2GC-06 1 104113045 104113045 G A AMY2B Intron 0.33 TCGA-EE-A2GC-06 1 104297120 104297120 G A AMY1C Splice_Site p.X293_splice 0.09 TCGA-EE-A2GC-06 1 104297133 104297133 A C AMY1C Missense_Mutation p.E297D 0.10 tolerated(0.1) benign(0.446) TCGA-EE-A2GC-06 1 10479853 10479853 C T PGD 3'UTR 0.40 TCGA-EE-A2GC-06 1 10690114 10690114 C T PEX14 3'UTR 0.39 TCGA-EE-A2GC-06 1 10708096 10708096 G A CASZ1 Missense_Mutation p.P1087S 0.31 tolerated(0.06) benign(0.013) TCGA-EE-A2GC-06 1 10713736 10713736 G A CASZ1 Missense_Mutation p.S793L 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-EE-A2GC-06 1 108145775 108145775 C T VAV3 Missense_Mutation p.A676T 0.46 tolerated(0.29) benign(0.02) TCGA-EE-A2GC-06 1 108700165 108700165 C T SLC25A24 Silent p.R196R 0.15 TCGA-EE-A2GC-06 1 109795343 109795343 G A CELSR2 Missense_Mutation p.R881Q 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 109803663 109803663 G A CELSR2 Splice_Site p.X1320_splice 0.65 TCGA-EE-A2GC-06 1 110734611 110734611 C T SLC6A17 Silent p.D294D 0.62 TCGA-EE-A2GC-06 1 110737277 110737277 C T SLC6A17 Missense_Mutation p.S459F 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 1 111492641 111492641 A G LRIF1 Silent p.D567D 0.57 TCGA-EE-A2GC-06 1 11187187 11187187 A T MTOR Missense_Mutation p.D2077E 0.30 tolerated(0.13) probably_damaging(0.992) TCGA-EE-A2GC-06 1 112026335 112026335 C T ADORA3 Missense_Mutation p.E340K 0.56 tolerated_low_confidence(0.35) benign(0.001) TCGA-EE-A2GC-06 1 112525046 112525046 C T KCND3 Silent p.G101G 0.64 TCGA-EE-A2GC-06 1 113234343 113234343 C T MOV10 Missense_Mutation p.P298L 0.55 tolerated(0.16) benign(0.001) TCGA-EE-A2GC-06 1 114448322 114448322 G A DCLRE1B Silent p.V38V 0.36 TCGA-EE-A2GC-06 1 114523737 114523737 C T OLFML3 Silent p.F189F 0.38 TCGA-EE-A2GC-06 1 1147087 1147087 G A TNFRSF4 Missense_Mutation p.P254S 0.39 tolerated(0.27) benign(0.272) TCGA-EE-A2GC-06 1 115218614 115218614 G A AMPD1 Missense_Mutation p.R500C 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 1 115487547 115487547 G A SYCP1 Missense_Mutation p.D700N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 115828650 115828650 G A NGF 3'UTR 0.32 TCGA-EE-A2GC-06 1 1158713 1158713 T A SDF4 Missense_Mutation p.K163M 0.38 deleterious(0.03) probably_damaging(0.948) TCGA-EE-A2GC-06 1 116311134 116311134 C T CASQ2 Missense_Mutation p.G10E 0.37 tolerated(0.28) benign(0.424) TCGA-EE-A2GC-06 1 11715756 11715756 G A FBXO2 5'Flank 0.75 TCGA-EE-A2GC-06 1 11715757 11715757 G A FBXO44 Splice_Site 0.75 TCGA-EE-A2GC-06 1 11716079 11716079 C T FBXO44 Nonsense_Mutation p.Q63* 0.36 TCGA-EE-A2GC-06 1 11735727 11735727 G A MAD2L2 Silent p.I163I 0.39 TCGA-EE-A2GC-06 1 118420551 118420551 G A GDAP2 Intron 0.44 TCGA-EE-A2GC-06 1 11897474 11897474 C T CLCN6 Missense_Mutation p.P738L 0.30 tolerated(0.15) benign(0.172) TCGA-EE-A2GC-06 1 120307109 120307109 C T HMGCS2 Missense_Mutation p.G82E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 1235944 1235944 G A ACAP3 Missense_Mutation p.A156V 0.36 tolerated(0.7) benign(0.018) TCGA-EE-A2GC-06 1 12677392 12677392 C T DHRS3 5'UTR 0.34 TCGA-EE-A2GC-06 1 12704613 12704613 C T AADACL4 Silent p.F16F 0.34 TCGA-EE-A2GC-06 1 12855983 12855983 C T PRAMEF1 Silent p.S421S 0.15 TCGA-EE-A2GC-06 1 12943183 12943183 G A PRAMEF4 Silent p.L11L 0.12 TCGA-EE-A2GC-06 1 12979687 12979687 C T PRAMEF7 Silent p.S293S 0.14 TCGA-EE-A2GC-06 1 13036329 13036329 G A PRAMEF22 Missense_Mutation p.R134K 0.74 tolerated(0.33) benign(0.011) TCGA-EE-A2GC-06 1 13695885 13695885 C T PRAMEF19 Silent p.G360G 0.22 TCGA-EE-A2GC-06 1 142713605 142713605 G A RP11-417J8.6 RNA 0.21 TCGA-EE-A2GC-06 1 144220790 144220790 C T NBPF8 Silent p.L3570L 0.07 TCGA-EE-A2GC-06 1 144917869 144917869 A G PDE4DIP Silent p.L473L 0.16 TCGA-EE-A2GC-06 1 145555774 145555774 C T ANKRD35 Missense_Mutation p.S41F 0.27 deleterious(0.02) possibly_damaging(0.788) TCGA-EE-A2GC-06 1 145555775 145555775 C T ANKRD35 Silent p.S41S 0.27 TCGA-EE-A2GC-06 1 145561251 145561251 G A ANKRD35 Silent p.E313E 0.40 TCGA-EE-A2GC-06 1 145561910 145561910 C T ANKRD35 Missense_Mutation p.A533V 0.32 deleterious(0) possibly_damaging(0.739) TCGA-EE-A2GC-06 1 145562252 145562252 C T ANKRD35 Missense_Mutation p.S647F 0.31 deleterious(0.02) benign(0.032) TCGA-EE-A2GC-06 1 1455661 1455661 C T ATAD3A Missense_Mutation p.R267C 0.30 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GC-06 1 147380929 147380929 G A GJA8 Missense_Mutation p.E283K 0.09 tolerated(0.06) benign(0.332) TCGA-EE-A2GC-06 1 147955206 147955206 G A PPIAL4A Missense_Mutation p.R47C 0.41 deleterious_low_confidence(0.02) benign(0) TCGA-EE-A2GC-06 1 148932901 148932901 C G RP11-14N7.2 RNA 0.06 TCGA-EE-A2GC-06 1 149857848 149857848 C T HIST2H2BE Missense_Mutation p.G115S 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-EE-A2GC-06 1 149872059 149872059 G A BOLA1 3'Flank 0.14 TCGA-EE-A2GC-06 1 149885369 149885369 C T SV2A Silent p.R8R 0.25 TCGA-EE-A2GC-06 1 149895501 149895501 G A SF3B4 Missense_Mutation p.P403L 0.47 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GC-06 1 150724443 150724443 G A CTSS Silent p.A147A 0.34 TCGA-EE-A2GC-06 1 150975030 150975030 G A FAM63A Missense_Mutation p.P70S 0.29 tolerated_low_confidence(0.18) benign(0.015) TCGA-EE-A2GC-06 1 150975031 150975031 G A FAM63A Silent p.I69I 0.29 TCGA-EE-A2GC-06 1 151214659 151214659 C T PIP5K1A Missense_Mutation p.S475F 0.36 tolerated(0.12) possibly_damaging(0.492) TCGA-EE-A2GC-06 1 151755386 151755386 C T TDRKH Missense_Mutation p.R38K 0.41 tolerated(0.22) benign(0.032) TCGA-EE-A2GC-06 1 152185557 152185557 G A HRNR Nonsense_Mutation p.Q2850* 0.45 TCGA-EE-A2GC-06 1 152191971 152191971 C T HRNR Missense_Mutation p.G712S 0.35 unknown(0) TCGA-EE-A2GC-06 1 152275195 152275195 C T FLG Missense_Mutation p.R4056K 0.38 unknown(0) TCGA-EE-A2GC-06 1 152286887 152286887 T A FLG Nonsense_Mutation p.K159* 0.34 TCGA-EE-A2GC-06 1 153906756 153906756 G A DENND4B Silent p.S932S 0.31 TCGA-EE-A2GC-06 1 154517326 154517326 G A TDRD10 Missense_Mutation p.G285R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 155264092 155264092 G A PKLR Silent p.F350F 0.14 TCGA-EE-A2GC-06 1 155911999 155911999 G A RXFP4 Missense_Mutation p.A167T 0.47 tolerated(0.09) benign(0.037) TCGA-EE-A2GC-06 1 156261452 156261452 T C TMEM79 3'UTR 0.36 TCGA-EE-A2GC-06 1 156524173 156524173 C T IQGAP3 Silent p.Q434Q 0.41 TCGA-EE-A2GC-06 1 156882722 156882722 G A PEAR1 Silent p.L790L 0.43 TCGA-EE-A2GC-06 1 156907240 156907240 G A ARHGEF11 Missense_Mutation p.T1414I 0.31 deleterious_low_confidence(0.02) benign(0.197) TCGA-EE-A2GC-06 1 156928584 156928584 G A ARHGEF11 Silent p.L484L 0.34 TCGA-EE-A2GC-06 1 15773143 15773143 C G CTRC 3'UTR 0.39 TCGA-EE-A2GC-06 1 157766900 157766900 C T FCRL1 Missense_Mutation p.M403I 0.24 tolerated(0.42) benign(0.003) TCGA-EE-A2GC-06 1 158047787 158047787 C T KIRREL Missense_Mutation p.P70L 0.36 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 1 158389972 158389972 G A OR10K2 Missense_Mutation p.P229S 0.29 tolerated(0.18) benign(0.137) TCGA-EE-A2GC-06 1 158390183 158390183 G A OR10K2 Silent p.I158I 0.40 TCGA-EE-A2GC-06 1 158435686 158435686 C T OR10K1 Missense_Mutation p.S112F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 1 158577052 158577052 C T OR10Z1 Missense_Mutation p.A275V 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 158581011 158581011 C T SPTA1 3'UTR 0.29 TCGA-EE-A2GC-06 1 158592810 158592810 C T SPTA1 Missense_Mutation p.R2028K 0.37 tolerated(1) benign(0.094) TCGA-EE-A2GC-06 1 158607988 158607988 G A SPTA1 Missense_Mutation p.S1675F 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GC-06 1 158725232 158725232 C T OR6K6 Silent p.F209F 0.32 TCGA-EE-A2GC-06 1 158747040 158747040 G A OR6N2 Missense_Mutation p.P129L 0.37 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A2GC-06 1 159176032 159176032 C T DARC Missense_Mutation p.S270F 0.38 tolerated(0.11) benign(0.11) TCGA-EE-A2GC-06 1 159410507 159410507 C T OR10J1 Missense_Mutation p.S320F 0.37 deleterious(0) probably_damaging(0.914) TCGA-EE-A2GC-06 1 159779293 159779293 C T FCRL6 Missense_Mutation p.P236S 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 1 159897580 159897580 G A IGSF9 Missense_Mutation p.R1110W 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.677) TCGA-EE-A2GC-06 1 159897581 159897581 G A IGSF9 Silent p.S1109S 0.37 TCGA-EE-A2GC-06 1 160057672 160057672 T A KCNJ9 3'UTR 0.42 TCGA-EE-A2GC-06 1 160057673 160057673 C T KCNJ9 3'UTR 0.45 TCGA-EE-A2GC-06 1 160160469 160160469 G A CASQ1 5'UTR 0.40 TCGA-EE-A2GC-06 1 160389330 160389330 C T VANGL2 Missense_Mutation p.P244L 0.35 deleterious(0.01) benign(0.022) TCGA-EE-A2GC-06 1 160580518 160580518 C T SLAMF1 3'UTR 0.38 TCGA-EE-A2GC-06 1 160720129 160720129 C T SLAMF7 Silent p.L229L 0.21 TCGA-EE-A2GC-06 1 160769762 160769762 C T LY9 Missense_Mutation p.S115F 0.33 deleterious(0) probably_damaging(0.963) TCGA-EE-A2GC-06 1 161049491 161049491 C T PVRL4 Missense_Mutation p.G110S 0.50 tolerated(0.34) possibly_damaging(0.771) TCGA-EE-A2GC-06 1 161495086 161495086 C T HSPA6 Missense_Mutation p.S213F 0.33 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-EE-A2GC-06 1 161647416 161647416 C T FCGR2B 3'UTR 0.36 TCGA-EE-A2GC-06 1 16257460 16257460 C T SPEN Silent p.S1575S 0.36 TCGA-EE-A2GC-06 1 16383395 16383395 C T CLCNKB Missense_Mutation p.P683L 0.29 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GC-06 1 1647848 1647848 G A CDK11A Missense_Mutation p.A142V 0.30 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-EE-A2GC-06 1 16535405 16535405 C T ARHGEF19 Missense_Mutation p.D49N 0.40 tolerated_low_confidence(0.17) benign(0.026) TCGA-EE-A2GC-06 1 167096871 167096871 G A DUSP27 Missense_Mutation p.E835K 0.21 tolerated(1) benign(0.002) TCGA-EE-A2GC-06 1 167815465 167815465 G A ADCY10 Missense_Mutation p.S825F 0.39 deleterious(0.01) benign(0.027) TCGA-EE-A2GC-06 1 168549308 168549308 G A XCL1 Silent p.G23G 0.44 TCGA-EE-A2GC-06 1 169509984 169509984 G A F5 Silent p.L1448L 0.40 TCGA-EE-A2GC-06 1 169586609 169586609 G A SELP Silent p.Y46Y 0.32 TCGA-EE-A2GC-06 1 169676557 169676557 C T SELL Missense_Mutation p.G182E 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 170513928 170513928 G A GORAB Missense_Mutation p.D227N 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 171079947 171079947 C T FMO3 Silent p.I212I 0.19 TCGA-EE-A2GC-06 1 171079999 171079999 C T FMO3 Missense_Mutation p.P230S 0.40 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 1 171086461 171086461 C T FMO3 Missense_Mutation p.S493L 0.36 tolerated(0.09) benign(0.002) TCGA-EE-A2GC-06 1 171310799 171310799 C T FMO4 Nonsense_Mutation p.R500* 0.44 TCGA-EE-A2GC-06 1 172357743 172357743 G C DNM3 Missense_Mutation p.R772S 0.22 tolerated_low_confidence(0.13) possibly_damaging(0.459) TCGA-EE-A2GC-06 1 17322889 17322889 G A ATP13A2 Missense_Mutation p.S433F 0.44 deleterious(0.04) benign(0.25) TCGA-EE-A2GC-06 1 173526549 173526549 C T SLC9C2 Missense_Mutation p.G382E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 17395537 17395537 G A PADI2 3'UTR 0.22 TCGA-EE-A2GC-06 1 175046721 175046721 T C TNN Missense_Mutation p.V56A 0.38 deleterious(0.02) benign(0.338) TCGA-EE-A2GC-06 1 175355418 175355418 C T TNR Silent p.Q509Q 0.32 TCGA-EE-A2GC-06 1 17609595 17609595 C T PADI3 3'UTR 0.24 TCGA-EE-A2GC-06 1 176738778 176738778 G C PAPPA2 Missense_Mutation p.W1453C 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 176809389 176809389 C T PAPPA2 Silent p.S1761S 0.41 TCGA-EE-A2GC-06 1 177249703 177249703 C T BRINP2 Missense_Mutation p.P464L 0.38 tolerated(0.14) benign(0.001) TCGA-EE-A2GC-06 1 178410699 178410699 G A RASAL2 Missense_Mutation p.G282R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 178490468 178490468 C T TEX35 Intron 0.20 TCGA-EE-A2GC-06 1 179497465 179497465 C T AXDND1 Missense_Mutation p.P872S 0.21 deleterious(0.03) possibly_damaging(0.857) TCGA-EE-A2GC-06 1 179609005 179609005 C T TDRD5 Nonsense_Mutation p.R518* 0.35 TCGA-EE-A2GC-06 1 181480569 181480569 C T CACNA1E Silent p.A145A 0.35 TCGA-EE-A2GC-06 1 181701970 181701970 G A CACNA1E Silent p.Q916Q 0.25 TCGA-EE-A2GC-06 1 181745302 181745302 C T CACNA1E Silent p.I1735I 0.39 TCGA-EE-A2GC-06 1 181762924 181762924 C T CACNA1E Missense_Mutation p.P2008S 0.50 tolerated(0.46) possibly_damaging(0.641) TCGA-EE-A2GC-06 1 181767550 181767550 C T CACNA1E Silent p.S2174S 0.32 TCGA-EE-A2GC-06 1 181767591 181767591 G A CACNA1E Missense_Mutation p.G2188E 0.35 tolerated(0.23) benign(0.205) TCGA-EE-A2GC-06 1 182550420 182550420 G A RNASEL Silent p.L615L 0.38 TCGA-EE-A2GC-06 1 182555078 182555078 G A RNASEL Silent p.I288I 0.37 TCGA-EE-A2GC-06 1 182853892 182853892 C T DHX9 Silent p.I1135I 0.29 TCGA-EE-A2GC-06 1 183529378 183529378 C T NCF2 Missense_Mutation p.E441K 0.31 tolerated(0.17) benign(0.005) TCGA-EE-A2GC-06 1 185964216 185964216 C T HMCN1 Nonsense_Mutation p.Q1259* 0.31 TCGA-EE-A2GC-06 1 186047260 186047260 C T HMCN1 Missense_Mutation p.P2836L 0.31 probably_damaging(0.999) TCGA-EE-A2GC-06 1 186276693 186276693 G A PRG4 Silent p.K614K 0.36 TCGA-EE-A2GC-06 1 186303579 186303579 G A TPR Missense_Mutation p.A1687V 0.36 benign(0.001) TCGA-EE-A2GC-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.32 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2GC-06 1 19029590 19029590 G A PAX7 Missense_Mutation p.G319R 0.20 tolerated_low_confidence(0.5) benign(0.365) TCGA-EE-A2GC-06 1 19181021 19181021 C T TAS1R2 Missense_Mutation p.E315K 0.34 tolerated(0.34) benign(0.059) TCGA-EE-A2GC-06 1 19181355 19181355 C T TAS1R2 Nonsense_Mutation p.W203* 0.52 TCGA-EE-A2GC-06 1 192153614 192153614 G T RGS18 Missense_Mutation p.R213M 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 196654220 196654220 C A CFH Missense_Mutation p.P273T 0.13 tolerated(0.13) benign(0.113) TCGA-EE-A2GC-06 1 196695903 196695903 C T CFH Missense_Mutation p.T690I 0.31 deleterious(0.01) benign(0.376) TCGA-EE-A2GC-06 1 196695904 196695904 C T CFH Silent p.T690T 0.32 TCGA-EE-A2GC-06 1 196748941 196748941 C T CFHR3 Missense_Mutation p.P90S 0.73 tolerated(1) benign(0.146) TCGA-EE-A2GC-06 1 196918592 196918592 C T CFHR2 Silent p.F22F 0.44 TCGA-EE-A2GC-06 1 197072889 197072889 A T ASPM Missense_Mutation p.I1831N 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 1 197098368 197098368 G A ASPM Silent p.S903S 0.51 TCGA-EE-A2GC-06 1 197104367 197104367 G A ASPM Missense_Mutation p.P678S 0.26 deleterious(0) possibly_damaging(0.45) TCGA-EE-A2GC-06 1 197128967 197128967 G A ZBTB41 Missense_Mutation p.S751F 0.30 tolerated(0.2) benign(0.003) TCGA-EE-A2GC-06 1 197886856 197886856 C T LHX9 5'UTR 0.33 TCGA-EE-A2GC-06 1 200017832 200017832 C T NR5A2 Silent p.N332N 0.40 TCGA-EE-A2GC-06 1 200881005 200881005 G A C1orf106 Missense_Mutation p.E462K 0.36 tolerated(0.35) benign(0.015) TCGA-EE-A2GC-06 1 200969865 200969865 G A KIF21B Silent p.I482I 0.33 TCGA-EE-A2GC-06 1 201028418 201028418 G A CACNA1S Nonsense_Mutation p.Q1142* 0.30 TCGA-EE-A2GC-06 1 201029892 201029892 G A CACNA1S Missense_Mutation p.P1103L 0.36 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GC-06 1 201195228 201195228 C T IGFN1 Missense_Mutation p.P3588L 0.39 probably_damaging(1) TCGA-EE-A2GC-06 1 201777203 201777203 G A NAV1 Silent p.Q1257Q 0.29 TCGA-EE-A2GC-06 1 201838745 201838745 G A IPO9 Missense_Mutation p.V678I 0.36 tolerated(0.16) benign(0.308) TCGA-EE-A2GC-06 1 201869571 201869571 C T LMOD1 Silent p.E190E 0.29 TCGA-EE-A2GC-06 1 203134560 203134560 C T ADORA1 Silent p.F171F 0.44 TCGA-EE-A2GC-06 1 203800888 203800888 C T ZC3H11A Missense_Mutation p.S267F 0.24 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2GC-06 1 204236603 204236603 C T PLEKHA6 Missense_Mutation p.D94N 0.33 deleterious(0.02) possibly_damaging(0.884) TCGA-EE-A2GC-06 1 204379328 204379328 A T PPP1R15B Silent p.V404V 0.39 TCGA-EE-A2GC-06 1 204966398 204966398 C T NFASC Silent p.P961P 0.28 TCGA-EE-A2GC-06 1 205417440 205417440 C T MIR135B RNA 0.34 TCGA-EE-A2GC-06 1 205496927 205496927 C T CDK18 Silent p.F275F 0.32 TCGA-EE-A2GC-06 1 205548947 205548947 C T MFSD4 Missense_Mutation p.P100L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 205628574 205628574 G A SLC45A3 Missense_Mutation p.P484S 0.25 tolerated(0.3) benign(0) TCGA-EE-A2GC-06 1 205890864 205890864 G A SLC26A9 Missense_Mutation p.P629S 0.50 tolerated(0.16) benign(0.11) TCGA-EE-A2GC-06 1 206224674 206224674 G A AVPR1B Silent p.L78L 0.17 TCGA-EE-A2GC-06 1 206902411 206902411 C T MAPKAPK2 Nonsense_Mutation p.Q151* 0.30 TCGA-EE-A2GC-06 1 206941966 206941966 C T IL10 3'UTR 0.33 TCGA-EE-A2GC-06 1 207143501 207143501 T A FCAMR 5'UTR 0.28 TCGA-EE-A2GC-06 1 207196511 207196511 G A C1orf116 Missense_Mutation p.P200S 0.36 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GC-06 1 207697313 207697313 C T CR1 Missense_Mutation p.A282V 0.29 tolerated(0.51) possibly_damaging(0.695) TCGA-EE-A2GC-06 1 207874891 207874891 C T CR1L Missense_Mutation p.P419L 0.34 tolerated(0.16) probably_damaging(0.981) TCGA-EE-A2GC-06 1 208216535 208216535 G A PLXNA2 Silent p.L1296L 0.41 TCGA-EE-A2GC-06 1 208390341 208390341 G C PLXNA2 Silent p.L309L 0.32 TCGA-EE-A2GC-06 1 209782328 209782328 C T CAMK1G Silent p.L213L 0.32 TCGA-EE-A2GC-06 1 20990946 20990946 C T KIF17 3'UTR 0.30 TCGA-EE-A2GC-06 1 209936196 209936196 G A TRAF3IP3 Missense_Mutation p.D178N 0.42 tolerated(0.06) benign(0.337) TCGA-EE-A2GC-06 1 210761357 210761357 T C HHAT Missense_Mutation p.C388R 0.48 tolerated(0.21) benign(0.397) TCGA-EE-A2GC-06 1 211192252 211192252 G A KCNH1 Missense_Mutation p.S302F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 212538573 212538573 G T TMEM206 Missense_Mutation p.T407K 0.41 tolerated_low_confidence(0.18) benign(0.028) TCGA-EE-A2GC-06 1 215408400 215408400 C T KCNK2 Missense_Mutation p.P398L 0.28 deleterious_low_confidence(0) benign(0.05) TCGA-EE-A2GC-06 1 21889741 21889741 G A ALPL Missense_Mutation p.E146K 0.39 tolerated(0.08) possibly_damaging(0.9) TCGA-EE-A2GC-06 1 220383832 220383832 C T RAB3GAP2 Splice_Site p.X171_splice 0.39 TCGA-EE-A2GC-06 1 22159032 22159032 G A HSPG2 Silent p.P3721P 0.29 TCGA-EE-A2GC-06 1 223284687 223284687 G A TLR5 Missense_Mutation p.P563S 0.38 deleterious(0) probably_damaging(0.947) TCGA-EE-A2GC-06 1 224577424 224577424 C A WDR26 3'UTR 0.24 TCGA-EE-A2GC-06 1 228399560 228399560 G A OBSCN Missense_Mutation p.D26N 0.36 probably_damaging(0.999) TCGA-EE-A2GC-06 1 228433369 228433369 C A OBSCN Missense_Mutation p.S1338Y 0.22 probably_damaging(0.958) TCGA-EE-A2GC-06 1 228433370 228433370 C T OBSCN Silent p.S1338S 0.22 TCGA-EE-A2GC-06 1 228466963 228466963 C G OBSCN Missense_Mutation p.P2834R 0.38 probably_damaging(0.994) TCGA-EE-A2GC-06 1 228466964 228466964 C T OBSCN Silent p.P2834P 0.38 TCGA-EE-A2GC-06 1 228559474 228559474 G A OBSCN Missense_Mutation p.G7956R 0.44 benign(0.439) TCGA-EE-A2GC-06 1 228582615 228582615 G A TRIM11 Missense_Mutation p.P400S 0.34 tolerated(0.1) possibly_damaging(0.677) TCGA-EE-A2GC-06 1 228582616 228582616 G A TRIM11 Silent p.D399D 0.34 TCGA-EE-A2GC-06 1 22974110 22974110 C T C1QC Missense_Mutation p.T191I 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2GC-06 1 235891379 235891379 A G LYST Silent p.S3053S 0.32 TCGA-EE-A2GC-06 1 23688594 23688594 G A ZNF436 Silent p.F427F 0.39 TCGA-EE-A2GC-06 1 237881821 237881821 G A RYR2 Silent p.K3518K 0.37 TCGA-EE-A2GC-06 1 240370838 240370838 C T FMN2 Missense_Mutation p.P909L 0.30 unknown(0) TCGA-EE-A2GC-06 1 241099944 241099944 G A RGS7 Missense_Mutation p.H97Y 0.39 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GC-06 1 241714312 241714312 A C KMO Missense_Mutation p.K94Q 0.41 tolerated(0.3) benign(0.088) TCGA-EE-A2GC-06 1 244218220 244218220 C T ZBTB18 Missense_Mutation p.P382S 0.32 deleterious(0.02) probably_damaging(0.938) TCGA-EE-A2GC-06 1 245530178 245530178 C T KIF26B Missense_Mutation p.P170S 0.29 deleterious(0.05) unknown(0) TCGA-EE-A2GC-06 1 245852056 245852056 C T KIF26B Missense_Mutation p.S1924F 0.21 deleterious(0) unknown(0) TCGA-EE-A2GC-06 1 246811001 246811001 C T CNST Nonsense_Mutation p.Q500* 0.39 TCGA-EE-A2GC-06 1 247712439 247712439 A G GCSAML 5'UTR 0.39 TCGA-EE-A2GC-06 1 247769031 247769031 C T OR2G3 Silent p.I48I 0.34 TCGA-EE-A2GC-06 1 248004409 248004409 G A OR11L1 Missense_Mutation p.P264S 0.33 tolerated(0.41) benign(0.006) TCGA-EE-A2GC-06 1 248084415 248084415 C T OR2T8 Silent p.I32I 0.29 TCGA-EE-A2GC-06 1 248366378 248366378 G A OR2M3 Silent p.R3R 0.34 TCGA-EE-A2GC-06 1 248487377 248487377 G A OR2M7 Missense_Mutation p.S165F 0.36 deleterious(0.02) benign(0.156) TCGA-EE-A2GC-06 1 248487663 248487663 C T OR2M7 Missense_Mutation p.D70N 0.36 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GC-06 1 248524930 248524930 C T OR2T4 Silent p.F16F 0.32 TCGA-EE-A2GC-06 1 248616348 248616348 C T OR2T2 Nonsense_Mutation p.Q84* 0.17 TCGA-EE-A2GC-06 1 248637457 248637457 C T OR2T3 Missense_Mutation p.S269F 0.21 deleterious(0.01) benign(0.037) TCGA-EE-A2GC-06 1 248685589 248685589 C G OR2G6 Missense_Mutation p.I214M 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 1 249106304 249106304 G A SH3BP5L Missense_Mutation p.P326L 0.40 tolerated(0.24) benign(0.007) TCGA-EE-A2GC-06 1 24932237 24932237 G A NCMAP Silent p.%3D 0.20 TCGA-EE-A2GC-06 1 2493252 2493252 G A TNFRSF14 Missense_Mutation p.R231K 0.35 tolerated(0.91) benign(0.134) TCGA-EE-A2GC-06 1 25824873 25824873 C T TMEM57 Silent p.S637S 0.32 TCGA-EE-A2GC-06 1 26655269 26655269 C T AIM1L Silent p.E596E 0.36 TCGA-EE-A2GC-06 1 26751920 26751920 G A LIN28A Missense_Mutation p.G119R 0.31 deleterious(0.02) possibly_damaging(0.833) TCGA-EE-A2GC-06 1 27177626 27177626 G A ZDHHC18 Silent p.L280L 0.36 TCGA-EE-A2GC-06 1 27332350 27332350 C T FAM46B 3'UTR 0.33 TCGA-EE-A2GC-06 1 27631591 27631591 C T WDTC1 Silent p.S580S 0.35 TCGA-EE-A2GC-06 1 27878454 27878454 G A AHDC1 Missense_Mutation p.S58F 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.683) TCGA-EE-A2GC-06 1 2938798 2938798 A C ACTRT2 Missense_Mutation p.H183P 0.37 tolerated(0.07) benign(0.002) TCGA-EE-A2GC-06 1 29585184 29585184 G A PTPRU Missense_Mutation p.G125R 0.23 tolerated(0.07) probably_damaging(0.99) TCGA-EE-A2GC-06 1 31438843 31438843 C T PUM1 Missense_Mutation p.G691E 0.30 deleterious(0) probably_damaging(0.953) TCGA-EE-A2GC-06 1 32196635 32196635 G A BAI2 Silent p.P1382P 0.33 TCGA-EE-A2GC-06 1 32620246 32620246 C T KPNA6 Missense_Mutation p.A21V 0.28 tolerated(0.07) possibly_damaging(0.809) TCGA-EE-A2GC-06 1 32846866 32846866 G A BSDC1 Missense_Mutation p.R138C 0.21 tolerated(0.05) possibly_damaging(0.708) TCGA-EE-A2GC-06 1 34052145 34052145 C T CSMD2 Missense_Mutation p.G2339E 0.26 deleterious(0.03) benign(0.03) TCGA-EE-A2GC-06 1 34087838 34087838 G A CSMD2 Missense_Mutation p.S1879F 0.34 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GC-06 1 34118059 34118059 G T CSMD2 Missense_Mutation p.P1444T 0.26 tolerated(0.14) benign(0.025) TCGA-EE-A2GC-06 1 34174812 34174812 G A CSMD2 Silent p.S1111S 0.41 TCGA-EE-A2GC-06 1 34258122 34258122 G A CSMD2 Silent p.I444I 0.35 TCGA-EE-A2GC-06 1 34330330 34330330 G A HMGB4 Missense_Mutation p.G180R 0.27 tolerated(0.05) benign(0.018) TCGA-EE-A2GC-06 1 34663070 34663070 G A C1orf94 Missense_Mutation p.V189M 0.29 tolerated(0.18) benign(0.03) TCGA-EE-A2GC-06 1 35580054 35580054 C T ZMYM1 Missense_Mutation p.L875F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 1 35919174 35919174 G A KIAA0319L Missense_Mutation p.L633F 0.35 tolerated(0.41) possibly_damaging(0.844) TCGA-EE-A2GC-06 1 36282515 36282515 C T AGO4 Missense_Mutation p.R18C 0.41 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 1 36564376 36564376 C T COL8A2 Silent p.G302G 0.48 TCGA-EE-A2GC-06 1 39802074 39802074 C T MACF1 Intron 0.41 TCGA-EE-A2GC-06 1 39910422 39910422 C G MACF1 Missense_Mutation p.S4448C 0.35 benign(0.072) TCGA-EE-A2GC-06 1 39926464 39926464 C T MACF1 Missense_Mutation p.S5115F 0.21 probably_damaging(0.992) TCGA-EE-A2GC-06 1 41012272 41012272 C T ZNF684 Missense_Mutation p.R93W 0.28 tolerated(0.06) benign(0) TCGA-EE-A2GC-06 1 41303398 41303398 G A KCNQ4 Missense_Mutation p.G603R 0.39 tolerated(0.3) possibly_damaging(0.702) TCGA-EE-A2GC-06 1 42046567 42046567 G A HIVEP3 Missense_Mutation p.S1301L 0.39 benign(0.309) TCGA-EE-A2GC-06 1 42050393 42050393 C T HIVEP3 Missense_Mutation p.A26T 0.13 benign(0.419) TCGA-EE-A2GC-06 1 44433324 44433324 C T IPO13 Silent p.L954L 0.26 TCGA-EE-A2GC-06 1 45363098 45363098 G A EIF2B3 Silent p.F195F 0.37 TCGA-EE-A2GC-06 1 45469358 45469358 G A HECTD3 Silent p.F828F 0.27 TCGA-EE-A2GC-06 1 45501489 45501489 G A ZSWIM5 Missense_Mutation p.P721L 0.33 tolerated(0.08) unknown(0) TCGA-EE-A2GC-06 1 45797756 45797756 C T MUTYH Silent p.V309V 0.34 TCGA-EE-A2GC-06 1 47034134 47034134 A C MKNK1 Missense_Mutation p.L218W 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 47283644 47283644 G A CYP4B1 Silent p.L405L 0.34 TCGA-EE-A2GC-06 1 47348647 47348647 G A CYP4Z2P RNA 0.23 TCGA-EE-A2GC-06 1 47399643 47399643 G A CYP4A11 Silent p.F399F 0.42 TCGA-EE-A2GC-06 1 47501543 47501543 G A CYP4X1 Silent p.S186S 0.38 TCGA-EE-A2GC-06 1 47515792 47515792 C T CYP4X1 Silent p.I492I 0.47 TCGA-EE-A2GC-06 1 47515810 47515810 G A CYP4X1 Silent p.G498G 0.28 TCGA-EE-A2GC-06 1 47560288 47560288 G A CYP4Z1 Missense_Mutation p.D275N 0.35 tolerated(0.12) probably_damaging(0.945) TCGA-EE-A2GC-06 1 52861988 52861988 C T ORC1 Missense_Mutation p.E151K 0.33 tolerated(0.24) benign(0.075) TCGA-EE-A2GC-06 1 52991400 52991400 G A ZCCHC11 Missense_Mutation p.P185S 0.37 tolerated_low_confidence(0.12) benign(0.005) TCGA-EE-A2GC-06 1 53164036 53164036 G A COA7 5'UTR 0.33 TCGA-EE-A2GC-06 1 54605545 54605545 C T CDCP2 Missense_Mutation p.G333E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 54605546 54605546 C A CDCP2 Missense_Mutation p.G333W 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 55207154 55207154 C T TTC4 Missense_Mutation p.L378F 0.37 tolerated(0.46) benign(0.053) TCGA-EE-A2GC-06 1 55307350 55307350 G A C1orf177 Intron 0.29 TCGA-EE-A2GC-06 1 55559734 55559734 G A USP24 Missense_Mutation p.S2077L 0.14 tolerated(0.31) benign(0.068) TCGA-EE-A2GC-06 1 57185342 57185342 T A C1orf168 3'UTR 0.33 TCGA-EE-A2GC-06 1 57347273 57347273 G A C8A Missense_Mutation p.R207Q 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GC-06 1 57347274 57347274 G A C8A Silent p.R207R 0.37 TCGA-EE-A2GC-06 1 57415271 57415271 C T C8B Missense_Mutation p.R274Q 0.24 tolerated(0.5) benign(0.005) TCGA-EE-A2GC-06 1 57476449 57476449 C T DAB1 Silent p.Q529Q 0.33 TCGA-EE-A2GC-06 1 62349916 62349916 C T INADL Silent p.I989I 0.40 TCGA-EE-A2GC-06 1 62738893 62738893 G A KANK4 Missense_Mutation p.S628F 0.39 deleterious(0.01) benign(0.102) TCGA-EE-A2GC-06 1 6649218 6649218 C T ZBTB48 Silent p.V671V 0.27 TCGA-EE-A2GC-06 1 6649219 6649219 C T ZBTB48 Silent p.L672L 0.27 TCGA-EE-A2GC-06 1 67147764 67147764 C T SGIP1 Missense_Mutation p.P343S 0.28 tolerated_low_confidence(0.07) benign(0.357) TCGA-EE-A2GC-06 1 70505117 70505117 C T LRRC7 Silent p.L1166L 0.41 TCGA-EE-A2GC-06 1 74492517 74492517 G A LRRIQ3 Missense_Mutation p.P619S 0.38 deleterious(0.05) possibly_damaging(0.541) TCGA-EE-A2GC-06 1 74649224 74649224 A C LRRIQ3 Missense_Mutation p.C49G 0.38 deleterious(0) possibly_damaging(0.83) TCGA-EE-A2GC-06 1 74905258 74905258 C T TNNI3K Silent p.L756L 0.37 TCGA-EE-A2GC-06 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.40 tolerated(0.4) possibly_damaging(0.703) TCGA-EE-A2GC-06 1 75707705 75707705 C T SLC44A5 Silent p.A171A 0.31 TCGA-EE-A2GC-06 1 76397793 76397793 C T ASB17 Missense_Mutation p.G62S 0.44 tolerated_low_confidence(0.07) probably_damaging(0.934) TCGA-EE-A2GC-06 1 78191401 78191401 G A USP33 Silent p.I425I 0.41 TCGA-EE-A2GC-06 1 82456395 82456395 C T LPHN2 Silent p.L1260L 0.25 TCGA-EE-A2GC-06 1 84386840 84386840 C T TTLL7 Missense_Mutation p.E432K 0.23 tolerated(0.07) possibly_damaging(0.581) TCGA-EE-A2GC-06 1 85424294 85424294 G A MCOLN2 Missense_Mutation p.S110F 0.39 deleterious(0.02) possibly_damaging(0.738) TCGA-EE-A2GC-06 1 865649 865649 C T SAMD11 Missense_Mutation p.P63S 0.41 tolerated_low_confidence(0.1) benign(0.027) TCGA-EE-A2GC-06 1 87805770 87805770 G T LMO4 Missense_Mutation p.G125V 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 89518900 89518900 C T GBP1 3'UTR 0.40 TCGA-EE-A2GC-06 1 91740330 91740330 C T HFM1 Missense_Mutation p.E1209K 0.16 tolerated(0.3) benign(0.009) TCGA-EE-A2GC-06 1 92470044 92470044 C T BRDT Missense_Mutation p.S821F 0.41 deleterious(0) possibly_damaging(0.794) TCGA-EE-A2GC-06 1 92470105 92470105 G A BRDT Silent p.R841R 0.31 TCGA-EE-A2GC-06 1 94041571 94041571 C T BCAR3 Missense_Mutation p.R601K 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 1 94337726 94337726 G A DNTTIP2 Silent p.L657L 0.36 TCGA-EE-A2GC-06 1 94471033 94471033 G T ABCA4 Silent p.A2037A 0.26 TCGA-EE-A2GC-06 1 94471034 94471034 G A ABCA4 Missense_Mutation p.A2037V 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GC-06 1 94650919 94650919 G A ARHGAP29 Silent p.F633F 0.27 TCGA-EE-A2GC-06 1 95657311 95657311 G A TMEM56 Missense_Mutation p.D227N 0.13 deleterious(0) probably_damaging(0.934) TCGA-EE-A2GC-06 1 97700483 97700483 G A DPYD Silent p.P789P 0.32 TCGA-EE-A2GC-06 1 9780172 9780172 G A PIK3CD Missense_Mutation p.E448K 0.39 tolerated(0.24) possibly_damaging(0.61) TCGA-EE-A2GC-06 1 98039412 98039412 C T DPYD Missense_Mutation p.E415K 0.33 tolerated(0.18) benign(0.003) TCGA-EE-A2GC-06 20 10630183 10630183 C T JAG1 Silent p.Q445Q 0.45 TCGA-EE-A2GC-06 20 1472072 1472072 G A SIRPB2 5'Flank 0.38 TCGA-EE-A2GC-06 20 1514984 1514984 G A SIRPD 3'UTR 0.55 TCGA-EE-A2GC-06 20 1638336 1638336 G A SIRPG Missense_Mutation p.H9Y 0.29 tolerated(0.3) benign(0.206) TCGA-EE-A2GC-06 20 18794489 18794489 G A SCP2D1 Silent p.K10K 0.34 TCGA-EE-A2GC-06 20 20505050 20505050 C T RALGAPA2 Silent p.R1300R 0.32 TCGA-EE-A2GC-06 20 23064978 23064978 C T CD93 Missense_Mutation p.E618K 0.34 tolerated(0.35) benign(0.196) TCGA-EE-A2GC-06 20 23064979 23064979 C T CD93 Silent p.K617K 0.34 TCGA-EE-A2GC-06 20 2378637 2378637 C T TGM6 Missense_Mutation p.T206I 0.28 tolerated(0.09) benign(0.003) TCGA-EE-A2GC-06 20 2443294 2443294 G A SNRPB Missense_Mutation p.P225S 0.42 tolerated_low_confidence(0.11) unknown(0) TCGA-EE-A2GC-06 20 30898063 30898063 C T KIF3B Silent p.T161T 0.31 TCGA-EE-A2GC-06 20 31024661 31024661 C T ASXL1 Silent p.A1382A 0.30 TCGA-EE-A2GC-06 20 31671589 31671589 C T BPIFB4 Missense_Mutation p.L196F 0.43 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A2GC-06 20 31828038 31828038 G A BPIFA1 Splice_Site p.X143_splice 0.34 TCGA-EE-A2GC-06 20 33328842 33328842 G A NCOA6 Missense_Mutation p.P1740S 0.39 benign(0.243) TCGA-EE-A2GC-06 20 33356387 33356387 C T NCOA6 Missense_Mutation p.E132K 0.26 probably_damaging(0.998) TCGA-EE-A2GC-06 20 33442402 33442402 G A GGT7 Silent p.A417A 0.35 TCGA-EE-A2GC-06 20 33442403 33442403 G A GGT7 Missense_Mutation p.A417V 0.35 deleterious(0.01) possibly_damaging(0.742) TCGA-EE-A2GC-06 20 33834663 33834663 C T MMP24 Silent p.G89G 0.35 TCGA-EE-A2GC-06 20 33855020 33855020 A T MMP24 Missense_Mutation p.E331V 0.43 tolerated(0.17) benign(0.009) TCGA-EE-A2GC-06 20 34025399 34025399 G A GDF5 Missense_Mutation p.P104S 0.20 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A2GC-06 20 34091199 34091199 C T CEP250 Nonsense_Mutation p.Q1668* 0.39 TCGA-EE-A2GC-06 20 34242055 34242055 G A RBM12 Missense_Mutation p.P397L 0.33 tolerated(0.17) benign(0.136) TCGA-EE-A2GC-06 20 3541349 3541349 G A ATRN Missense_Mutation p.G415E 0.56 deleterious(0.02) benign(0.302) TCGA-EE-A2GC-06 20 35422871 35422871 C T SOGA1 Missense_Mutation p.G1205E 0.34 tolerated(0.49) benign(0.071) TCGA-EE-A2GC-06 20 35422872 35422872 C T SOGA1 Missense_Mutation p.G1205R 0.35 tolerated(0.46) benign(0.104) TCGA-EE-A2GC-06 20 35526902 35526902 G A SAMHD1 Missense_Mutation p.H517Y 0.31 tolerated(0.2) benign(0.009) TCGA-EE-A2GC-06 20 35749321 35749321 C T MROH8 Missense_Mutation p.G726R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 20 3578606 3578606 C T ATRN Missense_Mutation p.R1175C 0.30 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2GC-06 20 36779353 36779353 C T TGM2 Nonsense_Mutation p.W180* 0.39 TCGA-EE-A2GC-06 20 36869589 36869589 G A KIAA1755 Missense_Mutation p.P315L 0.31 tolerated(0.06) benign(0.011) TCGA-EE-A2GC-06 20 36954783 36954783 C T BPI Silent p.A374A 0.35 TCGA-EE-A2GC-06 20 36982741 36982741 C T LBP Silent p.L142L 0.47 TCGA-EE-A2GC-06 20 36982742 36982742 C T LBP Silent p.L143L 0.46 TCGA-EE-A2GC-06 20 37202877 37202877 C T RALGAPB Silent p.A1409A 0.25 TCGA-EE-A2GC-06 20 40043679 40043679 G A CHD6 Intron 0.56 TCGA-EE-A2GC-06 20 40113090 40113090 G A CHD6 Missense_Mutation p.S720F 0.33 deleterious(0) possibly_damaging(0.798) TCGA-EE-A2GC-06 20 40709422 40709422 C T PTPRT 3'UTR 0.47 TCGA-EE-A2GC-06 20 40739043 40739043 G A PTPRT Missense_Mutation p.L1062F 0.30 tolerated(0.05) probably_damaging(0.983) TCGA-EE-A2GC-06 20 40747109 40747109 C T PTPRT Nonsense_Mutation p.W972* 0.20 TCGA-EE-A2GC-06 20 41408905 41408905 G A PTPRT Missense_Mutation p.P174L 0.30 tolerated(0.38) benign(0.034) TCGA-EE-A2GC-06 20 42199298 42199298 C T SGK2 Silent p.P194P 0.24 TCGA-EE-A2GC-06 20 43113135 43113135 C T TTPAL Missense_Mutation p.P202S 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 20 43545459 43545459 C T PABPC1L Silent p.A150A 0.21 TCGA-EE-A2GC-06 20 43550244 43550244 C T PABPC1L Missense_Mutation p.H250Y 0.29 deleterious(0) benign(0.317) TCGA-EE-A2GC-06 20 43850512 43850512 G A SEMG2 Missense_Mutation p.R80Q 0.41 tolerated(0.51) benign(0.062) TCGA-EE-A2GC-06 20 43995745 43995745 C T SYS1 Missense_Mutation p.S154F 0.29 deleterious(0.05) possibly_damaging(0.746) TCGA-EE-A2GC-06 20 44047558 44047558 C T PIGT Silent p.F144F 0.42 TCGA-EE-A2GC-06 20 44672309 44672309 G A SLC12A5 Silent p.R448R 0.23 TCGA-EE-A2GC-06 20 44672310 44672310 G A SLC12A5 Missense_Mutation p.D449N 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GC-06 20 45216772 45216772 G A SLC13A3 Silent p.F349F 0.16 TCGA-EE-A2GC-06 20 45221074 45221074 T G SLC13A3 Missense_Mutation p.I297L 0.43 tolerated(1) probably_damaging(0.987) TCGA-EE-A2GC-06 20 45221075 45221075 C T SLC13A3 Nonsense_Mutation p.W296* 0.43 TCGA-EE-A2GC-06 20 45905204 45905204 G A ZMYND8 Missense_Mutation p.S445F 0.17 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-EE-A2GC-06 20 46276050 46276050 C T NCOA3 Silent p.P1162P 0.42 TCGA-EE-A2GC-06 20 47865894 47865894 G A ZNFX1 Nonsense_Mutation p.R1223* 0.42 TCGA-EE-A2GC-06 20 48741504 48741504 G A TMEM189 Intron 0.42 TCGA-EE-A2GC-06 20 4913218 4913218 C T SLC23A2 5'UTR 0.26 TCGA-EE-A2GC-06 20 49458428 49458428 C T BCAS4 Silent p.S160S 0.52 TCGA-EE-A2GC-06 20 50230308 50230308 A G ATP9A Silent p.L827L 0.31 TCGA-EE-A2GC-06 20 5282926 5282926 G A PROKR2 Silent p.F305F 0.29 TCGA-EE-A2GC-06 20 5283145 5283145 G A PROKR2 Silent p.F232F 0.33 TCGA-EE-A2GC-06 20 54972518 54972518 C T CSTF1 Missense_Mutation p.A142V 0.37 tolerated(0.08) benign(0.036) TCGA-EE-A2GC-06 20 54972519 54972519 C T CSTF1 Silent p.A142A 0.37 TCGA-EE-A2GC-06 20 55027537 55027537 G A CASS4 Silent p.L435L 0.33 TCGA-EE-A2GC-06 20 55101190 55101190 A G FAM209A 3'UTR 0.41 TCGA-EE-A2GC-06 20 55953129 55953129 G A RAE1 Missense_Mutation p.E361K 0.41 tolerated(0.12) benign(0.278) TCGA-EE-A2GC-06 20 56928332 56928332 C T RAB22A Missense_Mutation p.R68C 0.43 tolerated(0.07) benign(0.026) TCGA-EE-A2GC-06 20 57766277 57766277 C T ZNF831 Missense_Mutation p.P68L 0.25 deleterious(0.04) benign(0.162) TCGA-EE-A2GC-06 20 57768088 57768088 C T ZNF831 Missense_Mutation p.P672S 0.47 tolerated(0.63) benign(0.025) TCGA-EE-A2GC-06 20 57782063 57782063 G A ZNF831 Missense_Mutation p.G1327R 0.34 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A2GC-06 20 57876712 57876712 C T EDN3 Silent p.F100F 0.38 TCGA-EE-A2GC-06 20 58563960 58563960 C T CDH26 Missense_Mutation p.P342L 0.34 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GC-06 20 6022042 6022042 C T LRRN4 Missense_Mutation p.E617K 0.21 tolerated(0.1) benign(0.284) TCGA-EE-A2GC-06 20 60427927 60427927 G A CDH4 Missense_Mutation p.G284S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GC-06 20 60585161 60585161 G A TAF4 Nonsense_Mutation p.Q568* 0.24 TCGA-EE-A2GC-06 20 6065719 6065719 G A FERMT1 Silent p.S529S 0.42 TCGA-EE-A2GC-06 20 60892830 60892830 C T LAMA5 Missense_Mutation p.R2415K 0.41 benign(0.089) TCGA-EE-A2GC-06 20 60897111 60897111 G A LAMA5 Missense_Mutation p.P2154S 0.43 benign(0.006) TCGA-EE-A2GC-06 20 60903975 60903975 G A LAMA5 Missense_Mutation p.P1458S 0.35 benign(0.002) TCGA-EE-A2GC-06 20 60907633 60907633 G A LAMA5 Silent p.S1141S 0.60 TCGA-EE-A2GC-06 20 60990935 60990935 G A RBBP8NL Silent p.S151S 0.29 TCGA-EE-A2GC-06 20 61391602 61391602 C T NTSR1 Missense_Mutation p.R414C 0.42 deleterious(0) probably_damaging(0.935) TCGA-EE-A2GC-06 20 61443801 61443801 C T OGFR Silent p.F278F 0.50 TCGA-EE-A2GC-06 20 61511764 61511764 G A DIDO1 Silent p.P1848P 0.35 TCGA-EE-A2GC-06 20 61525205 61525205 G A DIDO1 Missense_Mutation p.P972S 0.31 benign(0.012) TCGA-EE-A2GC-06 20 61917794 61917794 G A ARFGAP1 Missense_Mutation p.S312N 0.35 tolerated(0.29) benign(0.346) TCGA-EE-A2GC-06 20 62038246 62038246 G A KCNQ2 Silent p.I790I 0.35 TCGA-EE-A2GC-06 20 62045536 62045536 G A KCNQ2 Silent p.L512L 0.40 TCGA-EE-A2GC-06 20 62192594 62192594 G A HELZ2 Silent p.F2329F 0.44 TCGA-EE-A2GC-06 20 62199807 62199807 G A HELZ2 Missense_Mutation p.P545L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 20 62698282 62698282 G A TCEA2 Silent p.G50G 0.33 TCGA-EE-A2GC-06 20 8862546 8862546 G A PLCB1 3'UTR 0.38 TCGA-EE-A2GC-06 20 9402010 9402010 T C PLCB4 Silent p.L729L 0.44 TCGA-EE-A2GC-06 20 9520044 9520044 C T PAK7 3'UTR 0.41 TCGA-EE-A2GC-06 20 9523338 9523338 C T PAK7 Silent p.V633V 0.46 TCGA-EE-A2GC-06 20 9546725 9546725 G A PAK7 Missense_Mutation p.R433W 0.37 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GC-06 21 11039314 11039314 C T BAGE2 RNA 0.05 TCGA-EE-A2GC-06 21 11047514 11047514 C T BAGE2 RNA 0.04 TCGA-EE-A2GC-06 21 11058213 11058213 G A BAGE2 RNA 0.19 TCGA-EE-A2GC-06 21 15326399 15326399 C T ANKRD20A11P RNA 0.66 TCGA-EE-A2GC-06 21 30698862 30698862 C T BACH1 Silent p.V239V 0.58 TCGA-EE-A2GC-06 21 30698863 30698863 C T BACH1 Missense_Mutation p.R240C 0.58 tolerated(0.2) possibly_damaging(0.72) TCGA-EE-A2GC-06 21 38390361 38390361 C T RIPPLY3 Missense_Mutation p.R143W 0.74 deleterious(0.03) benign(0.001) TCGA-EE-A2GC-06 21 40590178 40590178 C T BRWD1 Missense_Mutation p.G1187S 0.65 tolerated(0.13) probably_damaging(1) TCGA-EE-A2GC-06 21 41151063 41151063 G A IGSF5 Silent p.P255P 0.66 TCGA-EE-A2GC-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 21 42540503 42540503 G A BACE2 Splice_Site p.X104_splice 0.58 TCGA-EE-A2GC-06 21 42860336 42860336 C T TMPRSS2 Missense_Mutation p.D181N 0.56 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GC-06 21 43711712 43711712 C T ABCG1 Silent p.S545S 0.71 TCGA-EE-A2GC-06 21 45820172 45820172 C T TRPM2 Missense_Mutation p.L747F 0.58 deleterious(0) probably_damaging(0.95) TCGA-EE-A2GC-06 21 46012327 46012327 C T KRTAP10-6 Silent p.L13L 0.57 TCGA-EE-A2GC-06 21 47742623 47742623 G A C21orf58 Silent p.S10S 0.75 TCGA-EE-A2GC-06 21 47742624 47742624 G A C21orf58 Missense_Mutation p.S10F 0.75 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GC-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.05 TCGA-EE-A2GC-06 22 16287790 16287790 G A POTEH Silent p.F32F 0.13 TCGA-EE-A2GC-06 22 17073189 17073189 G T CCT8L2 Missense_Mutation p.H84Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GC-06 22 18022243 18022246 CTCT TTC CECR2 Frame_Shift_Del p.T783Ifs*5 0.23 TCGA-EE-A2GC-06 22 18028131 18028131 C T CECR2 Silent p.L1031L 0.21 TCGA-EE-A2GC-06 22 18028387 18028387 C T CECR2 Missense_Mutation p.P1116L 0.36 deleterious_low_confidence(0) possibly_damaging(0.725) TCGA-EE-A2GC-06 22 18232883 18232883 G A BID Silent p.A46A 0.40 TCGA-EE-A2GC-06 22 20718565 20718565 C T USP41 Missense_Mutation p.G312R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 22 20819664 20819664 G A KLHL22 Missense_Mutation p.S198F 0.42 tolerated(0.34) benign(0.031) TCGA-EE-A2GC-06 22 20929471 20929471 C T MED15 Silent p.S408S 0.39 TCGA-EE-A2GC-06 22 21384585 21384585 G A SLC7A4 Silent p.A346A 0.10 TCGA-EE-A2GC-06 22 21998284 21998284 C T SDF2L1 Silent p.F162F 0.24 TCGA-EE-A2GC-06 22 22517004 22517004 C T IGLV4-60 Missense_Mutation p.L98F 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 22 22697958 22697958 C T IGLV9-49 Silent p.I82I 0.33 TCGA-EE-A2GC-06 22 23011132 23011132 G A IGLV3-27 Silent p.V65V 0.36 TCGA-EE-A2GC-06 22 23029640 23029640 C T IGLV3-25 Missense_Mutation p.S81F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 22 23162186 23162186 C T IGLV3-9 Silent p.I93I 0.28 TCGA-EE-A2GC-06 22 24087233 24087233 C T ZNF70 Missense_Mutation p.G32E 0.41 deleterious(0.04) possibly_damaging(0.454) TCGA-EE-A2GC-06 22 24087234 24087234 C T ZNF70 Missense_Mutation p.G32R 0.40 deleterious(0.05) benign(0.028) TCGA-EE-A2GC-06 22 24376534 24376534 C T GSTT1 Silent p.E204E 0.31 TCGA-EE-A2GC-06 22 24622120 24622120 C T GGT5 Missense_Mutation p.G385R 0.30 tolerated(0.71) benign(0.006) TCGA-EE-A2GC-06 22 24622222 24622222 C T GGT5 Missense_Mutation p.D351N 0.38 tolerated(0.26) benign(0.018) TCGA-EE-A2GC-06 22 25272680 25272680 G A SGSM1 Silent p.E531E 0.37 TCGA-EE-A2GC-06 22 26173717 26173717 G A MYO18B Silent p.G679G 0.34 TCGA-EE-A2GC-06 22 26304324 26304324 G A MYO18B Missense_Mutation p.M1728I 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GC-06 22 26689006 26689006 G A SEZ6L Missense_Mutation p.M243I 0.37 tolerated(0.23) benign(0.017) TCGA-EE-A2GC-06 22 26839181 26839181 C T ASPHD2 3'UTR 0.18 TCGA-EE-A2GC-06 22 26849355 26849355 A C HPS4 Silent p.A657A 0.35 TCGA-EE-A2GC-06 22 29745234 29745234 G A AP1B1 Silent p.L470L 0.33 TCGA-EE-A2GC-06 22 29834853 29834853 C T RFPL1 Missense_Mutation p.P25S 0.33 tolerated(0.74) benign(0.005) TCGA-EE-A2GC-06 22 30416441 30416441 C T MTMR3 Silent p.A931A 0.41 TCGA-EE-A2GC-06 22 30639607 30639607 C T LIF 3'UTR 0.52 TCGA-EE-A2GC-06 22 30690846 30690846 G A TBC1D10A Missense_Mutation p.A222V 0.33 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GC-06 22 30984049 30984049 G A PES1 Missense_Mutation p.L73F 0.42 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 22 31333589 31333589 G A MORC2 Silent p.I431I 0.40 TCGA-EE-A2GC-06 22 31663834 31663834 C T LIMK2 Silent p.L380L 0.36 TCGA-EE-A2GC-06 22 32589190 32589190 A G RFPL2 Intron 0.40 TCGA-EE-A2GC-06 22 32909799 32909799 G A SYN3 Silent p.S541S 0.28 TCGA-EE-A2GC-06 22 32909800 32909800 G C SYN3 Missense_Mutation p.S541C 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 22 35463124 35463124 G A ISX Missense_Mutation p.R15K 0.26 tolerated(0.36) benign(0.005) TCGA-EE-A2GC-06 22 36962539 36962539 C T CACNG2 Silent p.R99R 0.32 TCGA-EE-A2GC-06 22 36983539 36983539 C T CACNG2 Missense_Mutation p.E90K 0.32 tolerated(0.07) benign(0.066) TCGA-EE-A2GC-06 22 37462075 37462075 C T TMPRSS6 3'UTR 0.21 TCGA-EE-A2GC-06 22 37465272 37465272 C T TMPRSS6 Missense_Mutation p.E661K 0.32 deleterious(0.03) possibly_damaging(0.804) TCGA-EE-A2GC-06 22 37603034 37603034 C T SSTR3 Nonsense_Mutation p.W270* 0.27 TCGA-EE-A2GC-06 22 38049819 38049819 C T SH3BP1 Silent p.S544S 0.34 TCGA-EE-A2GC-06 22 38468555 38468555 T C PICK1 Missense_Mutation p.F210L 0.38 deleterious(0.04) probably_damaging(0.914) TCGA-EE-A2GC-06 22 39884672 39884672 C T MGAT3 Silent p.F440F 0.32 TCGA-EE-A2GC-06 22 40417328 40417328 C T FAM83F Missense_Mutation p.L272F 0.34 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2GC-06 22 40816972 40816972 G A MKL1 Missense_Mutation p.P254S 0.26 tolerated(0.09) benign(0.009) TCGA-EE-A2GC-06 22 41257082 41257082 T G DNAJB7 Missense_Mutation p.K306T 0.33 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2GC-06 22 41488922 41488922 C T EP300 5'UTR 0.38 TCGA-EE-A2GC-06 22 42191744 42191744 G A MEI1 Silent p.Q1224Q 0.30 TCGA-EE-A2GC-06 22 43088833 43088833 C T A4GALT 3'UTR 0.60 TCGA-EE-A2GC-06 22 43950943 43950943 C T EFCAB6 Missense_Mutation p.G1152S 0.16 tolerated(0.5) benign(0.009) TCGA-EE-A2GC-06 22 44068170 44068170 G A EFCAB6 Missense_Mutation p.P479S 0.35 tolerated(0.56) benign(0.007) TCGA-EE-A2GC-06 22 44178146 44178146 C T EFCAB6 Missense_Mutation p.R18Q 0.39 tolerated(0.51) benign(0.011) TCGA-EE-A2GC-06 22 45595851 45595851 G A KIAA0930 Silent p.S311S 0.28 TCGA-EE-A2GC-06 22 45689150 45689150 C T UPK3A Silent p.F220F 0.35 TCGA-EE-A2GC-06 22 46372642 46372642 G A WNT7B 5'UTR 0.31 TCGA-EE-A2GC-06 22 50719197 50719197 C T PLXNB2 Silent p.L1323L 0.39 TCGA-EE-A2GC-06 22 51017560 51017560 G A CHKB 3'UTR 0.43 TCGA-EE-A2GC-06 2 101598751 101598751 G A NPAS2 Missense_Mutation p.R514Q 0.53 tolerated(0.08) probably_damaging(0.909) TCGA-EE-A2GC-06 2 101609814 101609814 C T NPAS2 Missense_Mutation p.A706V 0.30 tolerated(0.67) benign(0.034) TCGA-EE-A2GC-06 2 102804359 102804359 T C IL1RL2 Missense_Mutation p.I11T 0.39 tolerated(0.07) benign(0.005) TCGA-EE-A2GC-06 2 103318941 103318941 C T SLC9A2 Missense_Mutation p.L609F 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 2 107423353 107423353 G A ST6GAL2 Silent p.I457I 0.25 TCGA-EE-A2GC-06 2 108487252 108487252 G A RGPD4 Missense_Mutation p.G931E 0.43 tolerated(0.2) benign(0.003) TCGA-EE-A2GC-06 2 108488514 108488514 G A RGPD4 Missense_Mutation p.E1352K 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 2 108618400 108618400 C T SLC5A7 Silent p.I215I 0.21 TCGA-EE-A2GC-06 2 10866644 10866644 C T ATP6V1C2 Missense_Mutation p.S49F 0.16 tolerated(0.06) possibly_damaging(0.629) TCGA-EE-A2GC-06 2 108875273 108875273 G A SULT1C3 Missense_Mutation p.D204N 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 2 109002778 109002778 C T SULT1C4 Missense_Mutation p.S249L 0.25 tolerated(0.06) benign(0.01) TCGA-EE-A2GC-06 2 109345596 109345596 G A RANBP2 Missense_Mutation p.M27I 0.27 tolerated(0.13) benign(0.005) TCGA-EE-A2GC-06 2 112777026 112777026 G A MERTK Missense_Mutation p.D706N 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 2 11338879 11338879 G T ROCK2 Missense_Mutation p.L978I 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A2GC-06 2 113676387 113676387 G A IL37 3'UTR 0.10 TCGA-EE-A2GC-06 2 113780347 113780347 C T IL36B Silent p.K133K 0.35 TCGA-EE-A2GC-06 2 113890433 113890433 C T IL1RN Silent p.F176F 0.47 TCGA-EE-A2GC-06 2 114257251 114257251 C T FOXD4L1 Missense_Mutation p.R140C 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 2 116066836 116066836 C T DPP10 Missense_Mutation p.P32S 0.24 deleterious(0.01) benign(0.439) TCGA-EE-A2GC-06 2 116066837 116066837 C T DPP10 Missense_Mutation p.P32L 0.26 deleterious(0) benign(0.43) TCGA-EE-A2GC-06 2 116066841 116066841 G A DPP10 Silent p.Q33Q 0.29 TCGA-EE-A2GC-06 2 116503668 116503668 C T DPP10 Nonsense_Mutation p.Q291* 0.18 TCGA-EE-A2GC-06 2 11911506 11911506 C T LPIN1 Silent p.I148I 0.11 TCGA-EE-A2GC-06 2 119739022 119739022 G A MARCO Silent p.G268G 0.16 TCGA-EE-A2GC-06 2 121708892 121708892 C T GLI2 Missense_Mutation p.P110S 0.33 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A2GC-06 2 127951372 127951372 G A CYP27C1 Missense_Mutation p.P264L 0.43 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 2 127951373 127951373 G A CYP27C1 Missense_Mutation p.P264S 0.44 deleterious(0.05) possibly_damaging(0.794) TCGA-EE-A2GC-06 2 128331608 128331608 C T MYO7B Missense_Mutation p.L236F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 128351213 128351213 C T MYO7B Silent p.F746F 0.20 TCGA-EE-A2GC-06 2 128767935 128767935 G A SAP130 Silent p.I285I 0.10 TCGA-EE-A2GC-06 2 133542818 133542818 C T NCKAP5 Silent p.L522L 0.45 TCGA-EE-A2GC-06 2 135630063 135630063 G A ACMSD Missense_Mutation p.G234E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 2 135782196 135782196 C T MAP3K19 Missense_Mutation p.E8K 0.18 deleterious_low_confidence(0.04) benign(0.139) TCGA-EE-A2GC-06 2 136567040 136567040 C T LCT Silent p.L959L 0.27 TCGA-EE-A2GC-06 2 137748477 137748477 G A THSD7B Intron 0.43 TCGA-EE-A2GC-06 2 139428436 139428436 C T NXPH2 3'UTR 0.39 TCGA-EE-A2GC-06 2 139428437 139428437 T A NXPH2 3'UTR 0.41 TCGA-EE-A2GC-06 2 141079576 141079576 C T LRP1B Missense_Mutation p.G4199E 0.40 probably_damaging(0.931) TCGA-EE-A2GC-06 2 141108583 141108583 A G LRP1B Missense_Mutation p.I3892T 0.45 benign(0.152) TCGA-EE-A2GC-06 2 141607744 141607744 C T LRP1B Nonsense_Mutation p.W1622* 0.20 TCGA-EE-A2GC-06 2 141680548 141680548 G A LRP1B Missense_Mutation p.S1102F 0.36 probably_damaging(0.966) TCGA-EE-A2GC-06 2 141806759 141806759 T C LRP1B Missense_Mutation p.K529E 0.47 benign(0.292) TCGA-EE-A2GC-06 2 152512907 152512907 G A NEB Silent p.P2085P 0.46 TCGA-EE-A2GC-06 2 152554087 152554087 C T NEB Missense_Mutation p.D410N 0.21 probably_damaging(1) TCGA-EE-A2GC-06 2 159488315 159488315 C T PKP4 Missense_Mutation p.R402C 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 2 159499059 159499059 T C PKP4 Missense_Mutation p.V586A 0.43 deleterious(0) probably_damaging(0.957) TCGA-EE-A2GC-06 2 160087160 160087160 C T TANC1 Silent p.S1741S 0.28 TCGA-EE-A2GC-06 2 160087161 160087161 C T TANC1 Missense_Mutation p.R1742C 0.29 deleterious_low_confidence(0.01) benign(0.052) TCGA-EE-A2GC-06 2 160901448 160901448 G A PLA2R1 Silent p.L110L 0.23 TCGA-EE-A2GC-06 2 162833319 162833319 T G SLC4A10 Missense_Mutation p.L1093V 0.35 tolerated(1) benign(0) TCGA-EE-A2GC-06 2 163374419 163374419 G A KCNH7 Missense_Mutation p.S238F 0.16 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A2GC-06 2 164466984 164466984 G A FIGN Missense_Mutation p.S453F 0.24 tolerated(0.22) possibly_damaging(0.896) TCGA-EE-A2GC-06 2 166848838 166848838 C T SCN1A Silent p.L1649L 0.46 TCGA-EE-A2GC-06 2 167134678 167134678 C T SCN9A Missense_Mutation p.G819E 0.17 deleterious(0.01) benign(0.416) TCGA-EE-A2GC-06 2 167298103 167298103 C T SCN7A Missense_Mutation p.E654K 0.36 tolerated(1) benign(0.007) TCGA-EE-A2GC-06 2 167328850 167328850 G A SCN7A Silent p.L183L 0.32 TCGA-EE-A2GC-06 2 168096438 168096438 C T XIRP2 Missense_Mutation p.S311F 0.20 possibly_damaging(0.891) TCGA-EE-A2GC-06 2 168100438 168100438 G A XIRP2 Missense_Mutation p.E846K 0.21 probably_damaging(0.999) TCGA-EE-A2GC-06 2 168101571 168101571 C T XIRP2 Silent p.I1223I 0.42 TCGA-EE-A2GC-06 2 168104646 168104646 G A XIRP2 Silent p.L2248L 0.32 TCGA-EE-A2GC-06 2 170063063 170063063 G A LRP2 Silent p.F2389F 0.49 TCGA-EE-A2GC-06 2 170115698 170115698 C T LRP2 Missense_Mutation p.E784K 0.24 benign(0.206) TCGA-EE-A2GC-06 2 171699195 171699195 C T GAD1 Intron 0.34 TCGA-EE-A2GC-06 2 171884887 171884887 C T TLK1 Missense_Mutation p.E400K 0.21 deleterious(0.01) possibly_damaging(0.733) TCGA-EE-A2GC-06 2 176982161 176982161 G T HOXD10 Missense_Mutation p.K200N 0.18 tolerated(0.09) possibly_damaging(0.528) TCGA-EE-A2GC-06 2 17699398 17699398 A T RAD51AP2 Missense_Mutation p.S95R 0.43 tolerated(0.12) possibly_damaging(0.839) TCGA-EE-A2GC-06 2 178936654 178936654 T C PDE11A Missense_Mutation p.I171V 0.49 tolerated(0.09) benign(0.141) TCGA-EE-A2GC-06 2 179404460 179404460 C T TTN Missense_Mutation p.E32778K 0.43 TCGA-EE-A2GC-06 2 179425011 179425011 C T TTN Silent p.R28616R 0.49 TCGA-EE-A2GC-06 2 179425534 179425534 G A TTN Missense_Mutation p.A28442V 0.22 TCGA-EE-A2GC-06 2 179438459 179438459 C T TTN Missense_Mutation p.E24134K 0.50 TCGA-EE-A2GC-06 2 179440123 179440123 C T TTN Nonsense_Mutation p.W23579* 0.21 TCGA-EE-A2GC-06 2 179451330 179451330 T A TTN Missense_Mutation p.E21433V 0.45 TCGA-EE-A2GC-06 2 179454575 179454575 C T TTN Missense_Mutation p.R20626Q 0.43 TCGA-EE-A2GC-06 2 179472736 179472736 G A TTN Missense_Mutation p.P17593L 0.24 TCGA-EE-A2GC-06 2 179484483 179484483 G A TTN Nonsense_Mutation p.Q15521* 0.42 TCGA-EE-A2GC-06 2 179527742 179527742 C T TTN Silent p.K12247K 0.32 TCGA-EE-A2GC-06 2 179593061 179593061 G A TTN Missense_Mutation p.S6497F 0.19 TCGA-EE-A2GC-06 2 179595421 179595421 G A TTN Missense_Mutation p.P5947S 0.40 TCGA-EE-A2GC-06 2 179595817 179595817 C G TTN Missense_Mutation p.D5859H 0.33 TCGA-EE-A2GC-06 2 179606297 179606297 C T TTN Missense_Mutation p.G3888E 0.46 TCGA-EE-A2GC-06 2 179606574 179606574 C T TTN Missense_Mutation p.E3796K 0.53 TCGA-EE-A2GC-06 2 179611474 179611474 C T TTN Intron 0.44 TCGA-EE-A2GC-06 2 179614349 179614349 C T TTN Intron 0.24 TCGA-EE-A2GC-06 2 179616309 179616309 A G TTN Intron 0.38 TCGA-EE-A2GC-06 2 179616458 179616458 C T TTN Intron 0.42 TCGA-EE-A2GC-06 2 179629520 179629520 A G TTN Missense_Mutation p.V3241A 0.46 TCGA-EE-A2GC-06 2 179635288 179635288 C T TTN Missense_Mutation p.G2744E 0.22 TCGA-EE-A2GC-06 2 179665398 179665398 G A TTN Missense_Mutation p.P103S 0.13 TCGA-EE-A2GC-06 2 179714883 179714883 C T CCDC141 Missense_Mutation p.E1084K 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 2 182340013 182340013 A C ITGA4 Missense_Mutation p.Q185P 0.50 tolerated(0.06) benign(0.248) TCGA-EE-A2GC-06 2 182340015 182340015 G A ITGA4 Missense_Mutation p.D186N 0.50 deleterious(0.05) probably_damaging(0.992) TCGA-EE-A2GC-06 2 183070702 183070702 C T PDE1A Missense_Mutation p.M305I 0.23 deleterious(0.04) benign(0.015) TCGA-EE-A2GC-06 2 183623942 183623942 C T DNAJC10 Silent p.L685L 0.26 TCGA-EE-A2GC-06 2 185800779 185800779 C T ZNF804A Missense_Mutation p.P219L 0.42 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 2 186672204 186672204 A C FSIP2 Silent p.T6146T 0.39 TCGA-EE-A2GC-06 2 187712479 187712479 G A ZSWIM2 Missense_Mutation p.P70L 0.35 tolerated(1) benign(0.001) TCGA-EE-A2GC-06 2 188349701 188349701 G A TFPI Silent p.F124F 0.21 TCGA-EE-A2GC-06 2 1891327 1891327 C T MYT1L Missense_Mutation p.E857K 0.18 deleterious(0.02) benign(0.406) TCGA-EE-A2GC-06 2 189849944 189849944 C T COL3A1 Nonsense_Mutation p.Q102* 0.47 TCGA-EE-A2GC-06 2 189869027 189869027 G A COL3A1 Silent p.R956R 0.40 TCGA-EE-A2GC-06 2 190535412 190535412 C T ASNSD1 Missense_Mutation p.S631F 0.43 deleterious_low_confidence(0) benign(0.141) TCGA-EE-A2GC-06 2 190535413 190535413 C T ASNSD1 Silent p.S631S 0.43 TCGA-EE-A2GC-06 2 191235713 191235713 C T INPP1 Missense_Mutation p.A262V 0.40 tolerated(0.95) benign(0.134) TCGA-EE-A2GC-06 2 191897726 191897726 C T STAT4 Missense_Mutation p.D668N 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2GC-06 2 192701046 192701046 G A SDPR Missense_Mutation p.P294L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 192701381 192701381 C T SDPR Silent p.G182G 0.18 TCGA-EE-A2GC-06 2 196636518 196636518 C T DNAH7 Missense_Mutation p.E3767K 0.22 deleterious(0.02) benign(0.097) TCGA-EE-A2GC-06 2 196746621 196746621 C T DNAH7 Silent p.L1953L 0.45 TCGA-EE-A2GC-06 2 196749452 196749452 G A DNAH7 Nonsense_Mutation p.R1874* 0.18 TCGA-EE-A2GC-06 2 196759929 196759937 AACAAATCC G DNAH7 Frame_Shift_Del p.D1554Sfs*12 0.21 TCGA-EE-A2GC-06 2 196822162 196822162 C T DNAH7 Silent p.E967E 0.19 TCGA-EE-A2GC-06 2 197586255 197586255 C T CCDC150 Silent p.L757L 0.29 TCGA-EE-A2GC-06 2 200137114 200137114 C T SATB2 Silent p.G674G 0.54 TCGA-EE-A2GC-06 2 202013853 202013853 C T CFLAR Intron 0.29 TCGA-EE-A2GC-06 2 202082315 202082315 G A CASP10 Missense_Mutation p.E474K 0.37 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2GC-06 2 202545643 202545643 C T MPP4 Missense_Mutation p.D283N 0.23 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GC-06 2 202632042 202632042 G A ALS2 Missense_Mutation p.P29S 0.34 tolerated(1) benign(0) TCGA-EE-A2GC-06 2 203560658 203560658 C T FAM117B Missense_Mutation p.S219F 0.48 tolerated(0.12) possibly_damaging(0.906) TCGA-EE-A2GC-06 2 203644187 203644187 C T ICA1L 3'UTR 0.48 TCGA-EE-A2GC-06 2 204034557 204034557 G A NBEAL1 Missense_Mutation p.A2000T 0.23 deleterious(0.01) benign(0.029) TCGA-EE-A2GC-06 2 20451299 20451299 A T PUM2 3'UTR 0.49 TCGA-EE-A2GC-06 2 207174320 207174320 C T ZDBF2 Missense_Mutation p.R1690W 0.22 deleterious(0.05) benign(0) TCGA-EE-A2GC-06 2 209025546 209025546 C T CRYGA Silent p.R169R 0.30 TCGA-EE-A2GC-06 2 209218643 209218643 C T PIKFYVE Missense_Mutation p.L1956F 0.43 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2GC-06 2 209345797 209345797 G A PTH2R Silent p.L328L 0.44 TCGA-EE-A2GC-06 2 211471586 211471586 C T CPS1 Missense_Mutation p.P711S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 212248412 212248412 G A ERBB4 Silent p.L1285L 0.42 TCGA-EE-A2GC-06 2 212426789 212426789 C T ERBB4 Missense_Mutation p.D776N 0.27 tolerated(0.15) benign(0.306) TCGA-EE-A2GC-06 2 21249786 21249786 C T APOB Silent p.G706G 0.23 TCGA-EE-A2GC-06 2 212537981 212537981 C T ERBB4 Missense_Mutation p.E542K 0.22 deleterious(0.04) benign(0.262) TCGA-EE-A2GC-06 2 215278856 215278856 C T VWC2L 5'UTR 0.18 TCGA-EE-A2GC-06 2 215872517 215872517 C T ABCA12 Nonsense_Mutation p.W842* 0.57 TCGA-EE-A2GC-06 2 215928919 215928919 G A ABCA12 Missense_Mutation p.P63S 0.49 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 2 216960723 216960723 C T TMEM169 Missense_Mutation p.L13F 0.45 tolerated_low_confidence(0.18) benign(0.006) TCGA-EE-A2GC-06 2 217123957 217123957 C T MARCH4 3'UTR 0.17 TCGA-EE-A2GC-06 2 218669181 218669181 T C TNS1 3'UTR 0.24 TCGA-EE-A2GC-06 2 219000202 219000202 C T CXCR2 Silent p.I226I 0.27 TCGA-EE-A2GC-06 2 219029056 219029056 C T CXCR1 Silent p.L293L 0.39 TCGA-EE-A2GC-06 2 219254628 219254628 C T SLC11A1 Silent p.I277I 0.22 TCGA-EE-A2GC-06 2 219266430 219266430 C T CTDSP1 Missense_Mutation p.P71S 0.24 tolerated(0.15) benign(0.007) TCGA-EE-A2GC-06 2 219267437 219267437 G A CTDSP1 Intron 0.21 TCGA-EE-A2GC-06 2 219509210 219509210 C T ZNF142 Missense_Mutation p.G677S 0.34 tolerated(0.62) benign(0.006) TCGA-EE-A2GC-06 2 219695545 219695545 C T PRKAG3 Silent p.G51G 0.45 TCGA-EE-A2GC-06 2 219895915 219895915 G A CCDC108 Missense_Mutation p.L310F 0.18 tolerated(0.71) possibly_damaging(0.637) TCGA-EE-A2GC-06 2 219920581 219920581 G A IHH Missense_Mutation p.S195L 0.42 deleterious(0.02) probably_damaging(0.917) TCGA-EE-A2GC-06 2 220047130 220047130 C T FAM134A Missense_Mutation p.P471S 0.45 tolerated(0.12) benign(0.012) TCGA-EE-A2GC-06 2 220115861 220115861 G A TUBA4A Missense_Mutation p.S187F 0.38 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EE-A2GC-06 2 220334094 220334094 G A SPEG Missense_Mutation p.M1236I 0.23 probably_damaging(0.997) TCGA-EE-A2GC-06 2 220338616 220338616 G A SPEG Missense_Mutation p.E1480K 0.11 possibly_damaging(0.526) TCGA-EE-A2GC-06 2 220498006 220498006 G A SLC4A3 Missense_Mutation p.D457N 0.23 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A2GC-06 2 222294725 222294725 G A EPHA4 Silent p.L881L 0.46 TCGA-EE-A2GC-06 2 223918013 223918013 C A KCNE4 Silent p.L155L 0.18 TCGA-EE-A2GC-06 2 223918037 223918037 G A KCNE4 Silent p.S163S 0.14 TCGA-EE-A2GC-06 2 224462184 224462184 C T SCG2 Missense_Mutation p.R606K 0.08 tolerated_low_confidence(0.11) benign(0.036) TCGA-EE-A2GC-06 2 224462859 224462859 G A SCG2 Missense_Mutation p.P381L 0.13 tolerated(0.05) benign(0.051) TCGA-EE-A2GC-06 2 226447051 226447051 C T NYAP2 Silent p.F306F 0.18 TCGA-EE-A2GC-06 2 227886775 227886775 G A COL4A4 Missense_Mutation p.P1402L 0.40 unknown(0) TCGA-EE-A2GC-06 2 227896927 227896927 G A COL4A4 Missense_Mutation p.P1215S 0.44 unknown(0) TCGA-EE-A2GC-06 2 227914842 227914842 C T COL4A4 Silent p.E1052E 0.44 TCGA-EE-A2GC-06 2 227917128 227917128 C T COL4A4 Missense_Mutation p.G954E 0.40 unknown(0) TCGA-EE-A2GC-06 2 227942760 227942760 C T COL4A4 Missense_Mutation p.G613R 0.10 probably_damaging(0.995) TCGA-EE-A2GC-06 2 227945175 227945175 C T COL4A4 Missense_Mutation p.G596E 0.40 probably_damaging(0.972) TCGA-EE-A2GC-06 2 228783512 228783512 C T DAW1 Silent p.F330F 0.42 TCGA-EE-A2GC-06 2 228855733 228855733 C T SPHKAP Missense_Mutation p.E1648K 0.45 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GC-06 2 228881959 228881959 C A SPHKAP Missense_Mutation p.R1204I 0.16 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2GC-06 2 228882090 228882090 C T SPHKAP Silent p.L1160L 0.16 TCGA-EE-A2GC-06 2 228886515 228886515 C T SPHKAP Silent p.T203T 0.39 TCGA-EE-A2GC-06 2 228890178 228890178 C A SPHKAP Nonsense_Mutation p.E125* 0.30 TCGA-EE-A2GC-06 2 230911331 230911331 C T SLC16A14 Missense_Mutation p.G171S 0.46 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 2 231112730 231112730 G A SP140 Missense_Mutation p.R281K 0.42 tolerated(0.99) benign(0.001) TCGA-EE-A2GC-06 2 231742824 231742824 C T ITM2C 3'UTR 0.36 TCGA-EE-A2GC-06 2 232458440 232458440 G A C2orf57 Missense_Mutation p.D260N 0.49 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2GC-06 2 233320917 233320917 G A ALPI Missense_Mutation p.G3E 0.52 deleterious_low_confidence(0.03) possibly_damaging(0.807) TCGA-EE-A2GC-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.48 TCGA-EE-A2GC-06 2 233899191 233899191 G A NEU2 Silent p.R189R 0.55 TCGA-EE-A2GC-06 2 234098535 234098535 C T INPP5D Nonsense_Mutation p.Q788* 0.35 TCGA-EE-A2GC-06 2 234112976 234112976 C T INPP5D Silent p.I1048I 0.23 TCGA-EE-A2GC-06 2 234545462 234545462 G A UGT1A10 Nonsense_Mutation p.W98* 0.18 TCGA-EE-A2GC-06 2 234601598 234601598 G A UGT1A6 5'UTR 0.47 TCGA-EE-A2GC-06 2 234637957 234637957 C T UGT1A3 Missense_Mutation p.T62I 0.23 tolerated(0.7) benign(0.016) TCGA-EE-A2GC-06 2 234652119 234652119 G A UGT1A10 Intron 0.36 TCGA-EE-A2GC-06 2 234652226 234652226 C T UGT1A10 Intron 0.23 TCGA-EE-A2GC-06 2 238259801 238259801 C T COL6A3 Missense_Mutation p.R2263Q 0.46 unknown(0) TCGA-EE-A2GC-06 2 238285955 238285955 C T COL6A3 Missense_Mutation p.G844S 0.13 probably_damaging(1) TCGA-EE-A2GC-06 2 239016574 239016574 G A ESPNL Missense_Mutation p.G272E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 240085518 240085518 C T HDAC4 Missense_Mutation p.D198N 0.26 tolerated(0.54) probably_damaging(0.999) TCGA-EE-A2GC-06 2 240984548 240984548 C T OR6B3 Silent p.G314G 0.27 TCGA-EE-A2GC-06 2 241465154 241465154 G A ANKMY1 Missense_Mutation p.P339L 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 2 241534054 241534054 C T CAPN10 Missense_Mutation p.L309F 0.57 tolerated(0.28) benign(0.03) TCGA-EE-A2GC-06 2 241813456 241813456 C T AGXT Silent p.L219L 0.18 TCGA-EE-A2GC-06 2 242072304 242072304 G A PASK Missense_Mutation p.P483L 0.22 tolerated(0.08) benign(0.005) TCGA-EE-A2GC-06 2 24222604 24222604 C T UBXN2A Missense_Mutation p.S216F 0.52 tolerated(0.05) benign(0.006) TCGA-EE-A2GC-06 2 27167592 27167592 G A DPYSL5 Silent p.G503G 0.15 TCGA-EE-A2GC-06 2 27503069 27503069 G A DNAJC5G Missense_Mutation p.E186K 0.16 tolerated(0.05) benign(0.041) TCGA-EE-A2GC-06 2 27801023 27801023 G A C2orf16 Silent p.T528T 0.14 TCGA-EE-A2GC-06 2 28627159 28627159 C T FOSL2 Silent p.A96A 0.28 TCGA-EE-A2GC-06 2 28843772 28843772 C T PLB1 Missense_Mutation p.L1152F 0.47 deleterious(0.01) probably_damaging(0.93) TCGA-EE-A2GC-06 2 29001786 29001786 C T PPP1CB Missense_Mutation p.S99F 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A2GC-06 2 29245104 29245104 G A FAM179A Missense_Mutation p.E481K 0.35 deleterious(0.03) possibly_damaging(0.873) TCGA-EE-A2GC-06 2 29259493 29259493 C T FAM179A Silent p.P835P 0.43 TCGA-EE-A2GC-06 2 29293657 29293657 C T C2orf71 Silent p.G1157G 0.41 TCGA-EE-A2GC-06 2 29754789 29754789 C T ALK Silent p.G382G 0.50 TCGA-EE-A2GC-06 2 31167752 31167752 G A GALNT14 Missense_Mutation p.R272W 0.27 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A2GC-06 2 32666457 32666457 C T BIRC6 Missense_Mutation p.R1291W 0.55 possibly_damaging(0.803) TCGA-EE-A2GC-06 2 33505208 33505208 G A LTBP1 Nonsense_Mutation p.W1032* 0.40 TCGA-EE-A2GC-06 2 3599846 3599846 G A RNASEH1 Silent p.L99L 0.52 TCGA-EE-A2GC-06 2 36740728 36740728 C T CRIM1 Silent p.L604L 0.48 TCGA-EE-A2GC-06 2 38527436 38527436 G A ATL2 Missense_Mutation p.P369L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 2 38809232 38809232 T C HNRNPLL Silent p.L232L 0.15 TCGA-EE-A2GC-06 2 40405527 40405527 C T SLC8A1 Missense_Mutation p.A639T 0.52 tolerated(0.22) benign(0.003) TCGA-EE-A2GC-06 2 44041707 44041707 A T ABCG5 Silent p.I557I 0.16 TCGA-EE-A2GC-06 2 44153096 44153096 G A LRPPRC Missense_Mutation p.P914L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 2 44508527 44508527 T C SLC3A1 Silent p.G204G 0.53 TCGA-EE-A2GC-06 2 48936151 48936151 C T LHCGR Missense_Mutation p.E206K 0.50 tolerated(0.47) benign(0.044) TCGA-EE-A2GC-06 2 49189899 49189899 G A FSHR Silent p.V687V 0.54 TCGA-EE-A2GC-06 2 49381423 49381423 G T FSHR Missense_Mutation p.P45Q 0.17 tolerated(0.08) benign(0.029) TCGA-EE-A2GC-06 2 50724786 50724786 C T NRXN1 Missense_Mutation p.R895Q 0.24 deleterious(0.01) possibly_damaging(0.482) TCGA-EE-A2GC-06 2 54081724 54081724 G A GPR75 Missense_Mutation p.S57F 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 2 54587394 54587394 C T C2orf73 Missense_Mutation p.P187S 0.20 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 2 63380059 63380059 C T WDPCP Missense_Mutation p.G727D 0.37 tolerated(0.22) benign(0) TCGA-EE-A2GC-06 2 64118353 64118353 G A UGP2 Missense_Mutation p.D507N 0.34 deleterious(0.03) benign(0.325) TCGA-EE-A2GC-06 2 70680445 70680445 C T TGFA Missense_Mutation p.R127Q 0.51 deleterious(0.01) benign(0.164) TCGA-EE-A2GC-06 2 70917918 70917918 C T ADD2 Silent p.K283K 0.44 TCGA-EE-A2GC-06 2 71797378 71797378 C T DYSF Missense_Mutation p.P1000L 0.36 deleterious(0.03) possibly_damaging(0.503) TCGA-EE-A2GC-06 2 71797379 71797379 C T DYSF Silent p.P1000P 0.35 TCGA-EE-A2GC-06 2 73302721 73302721 G A RAB11FIP5 Silent p.I630I 0.41 TCGA-EE-A2GC-06 2 73446039 73446039 C T SMYD5 Silent p.F49F 0.56 TCGA-EE-A2GC-06 2 73761968 73761968 C T ALMS1 Missense_Mutation p.P3266S 0.35 probably_damaging(0.997) TCGA-EE-A2GC-06 2 73799595 73799595 C T ALMS1 Missense_Mutation p.P3530S 0.31 benign(0.165) TCGA-EE-A2GC-06 2 74040936 74040936 G A C2orf78 Missense_Mutation p.D144N 0.34 tolerated(0.11) probably_damaging(1) TCGA-EE-A2GC-06 2 74466523 74466523 C T SLC4A5 Missense_Mutation p.G753E 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 2 74590268 74590268 G A DCTN1 Missense_Mutation p.P1128S 0.22 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A2GC-06 2 74699822 74699822 G A MRPL53 5'UTR 0.47 TCGA-EE-A2GC-06 2 74717502 74717502 C T TTC31 Missense_Mutation p.P122S 0.56 tolerated(0.13) benign(0.029) TCGA-EE-A2GC-06 2 79384749 79384749 G A REG3A Missense_Mutation p.P137S 0.34 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A2GC-06 2 80773066 80773066 C T CTNNA2 Missense_Mutation p.P473L 0.12 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GC-06 2 85826103 85826103 G A TMEM150A 3'UTR 0.40 TCGA-EE-A2GC-06 2 85866461 85866461 C T USP39 Missense_Mutation p.P411S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 85866462 85866462 C T USP39 Missense_Mutation p.P411L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 2 8822544 8822544 C T ID2 Silent p.P83P 0.25 TCGA-EE-A2GC-06 2 89160094 89160094 C T IGKJ5 Missense_Mutation p.R9Q 0.50 unknown(0) TCGA-EE-A2GC-06 2 90249238 90249238 C T IGKV1D-43 Missense_Mutation p.A65V 0.20 tolerated(0.09) benign(0.109) TCGA-EE-A2GC-06 2 90260137 90260137 C T IGKV1D-8 Silent p.V80V 0.20 TCGA-EE-A2GC-06 2 95941749 95941749 T G PROM2 Silent p.T122T 0.19 TCGA-EE-A2GC-06 2 97218083 97218083 C T ARID5A 3'UTR 0.53 TCGA-EE-A2GC-06 2 98411450 98411450 G A TMEM131 Missense_Mutation p.A1110V 0.21 tolerated(0.29) possibly_damaging(0.629) TCGA-EE-A2GC-06 2 99012514 99012514 G A CNGA3 Missense_Mutation p.R294K 0.33 deleterious(0.04) possibly_damaging(0.759) TCGA-EE-A2GC-06 3 100170717 100170717 C T LNP1 Missense_Mutation p.S104F 0.08 tolerated(0.09) benign(0.119) TCGA-EE-A2GC-06 3 10268076 10268076 G A IRAK2 Missense_Mutation p.G411S 0.32 tolerated(0.05) probably_damaging(0.962) TCGA-EE-A2GC-06 3 10320092 10320092 C T TATDN2 Silent p.I697I 0.31 TCGA-EE-A2GC-06 3 10362806 10362806 C T SEC13 5'UTR 0.61 TCGA-EE-A2GC-06 3 10401739 10401739 G A ATP2B2 Silent p.F576F 0.29 TCGA-EE-A2GC-06 3 105397331 105397331 G A CBLB Missense_Mutation p.P838L 0.56 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A2GC-06 3 107097085 107097085 G A CCDC54 Missense_Mutation p.M217I 0.51 tolerated(1) benign(0) TCGA-EE-A2GC-06 3 108178230 108178230 G A MYH15 Missense_Mutation p.P687S 0.49 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2GC-06 3 108475404 108475404 G A RETNLB Silent p.L53L 0.13 TCGA-EE-A2GC-06 3 109047910 109047910 C T DPPA4 Silent p.G235G 0.43 TCGA-EE-A2GC-06 3 113285348 113285348 G A SIDT1 Missense_Mutation p.E102K 0.55 tolerated(0.11) benign(0.01) TCGA-EE-A2GC-06 3 113737698 113737698 G A KIAA1407 Silent p.F330F 0.06 TCGA-EE-A2GC-06 3 119120819 119120819 C T ARHGAP31 Missense_Mutation p.A407V 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 3 119378809 119378809 G A POPDC2 Silent p.I154I 0.53 TCGA-EE-A2GC-06 3 119449180 119449180 G A MAATS1 Missense_Mutation p.G325E 0.30 tolerated(1) benign(0) TCGA-EE-A2GC-06 3 121178949 121178949 T G POLQ Missense_Mutation p.K2367T 0.46 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GC-06 3 122003081 122003081 C T CASR Silent p.I770I 0.53 TCGA-EE-A2GC-06 3 122255868 122255868 G A PARP9 Silent p.I641I 0.46 TCGA-EE-A2GC-06 3 122274437 122274437 G A PARP9 Missense_Mutation p.T229I 0.41 tolerated(0.19) benign(0.009) TCGA-EE-A2GC-06 3 124209691 124209691 C T KALRN Missense_Mutation p.S1514F 0.44 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2GC-06 3 12447402 12447402 C T PPARG Missense_Mutation p.P214L 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GC-06 3 124731583 124731583 G T HEG1 Missense_Mutation p.S947Y 0.67 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GC-06 3 125648252 125648252 C T ALG1L Silent p.R169R 0.53 TCGA-EE-A2GC-06 3 126268752 126268752 G A C3orf22 Nonsense_Mutation p.Q129* 0.14 TCGA-EE-A2GC-06 3 12660162 12660162 G A RAF1 Missense_Mutation p.A20V 0.39 deleterious_low_confidence(0.02) benign(0.015) TCGA-EE-A2GC-06 3 131418796 131418796 G A CPNE4 Missense_Mutation p.S130F 0.39 deleterious(0) benign(0.259) TCGA-EE-A2GC-06 3 141291480 141291480 C T RASA2 Missense_Mutation p.S400F 0.43 deleterious(0) probably_damaging(0.943) TCGA-EE-A2GC-06 3 14154485 14154485 C A CHCHD4 Missense_Mutation p.D124Y 0.39 deleterious(0) unknown(0) TCGA-EE-A2GC-06 3 14175299 14175299 C T TMEM43 Silent p.F191F 0.39 TCGA-EE-A2GC-06 3 146167009 146167009 C T PLSCR2 Missense_Mutation p.G283D 0.56 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 3 148596253 148596253 G A CPA3 Missense_Mutation p.E99K 0.48 tolerated(0.84) possibly_damaging(0.661) TCGA-EE-A2GC-06 3 151105621 151105621 G A MED12L Silent p.Q1669Q 0.39 TCGA-EE-A2GC-06 3 151155680 151155680 G A IGSF10 Silent p.T2223T 0.18 TCGA-EE-A2GC-06 3 151598919 151598919 C T SUCNR1 Silent p.F196F 0.45 TCGA-EE-A2GC-06 3 153909170 153909170 C T ARHGEF26 Missense_Mutation p.P578L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 3 154147351 154147351 C T GPR149 Silent p.E18E 0.24 TCGA-EE-A2GC-06 3 155200219 155200219 T C PLCH1 Missense_Mutation p.N1207S 0.44 tolerated_low_confidence(0.66) benign(0.001) TCGA-EE-A2GC-06 3 158539415 158539415 C T MFSD1 Missense_Mutation p.S347F 0.38 deleterious(0) possibly_damaging(0.554) TCGA-EE-A2GC-06 3 160118641 160118641 C T SMC4 Silent p.S9S 0.50 TCGA-EE-A2GC-06 3 161146971 161146971 G A RP11-3P17.5 RNA 0.45 TCGA-EE-A2GC-06 3 164735365 164735365 C T SI Missense_Mutation p.D1244N 0.14 tolerated(0.33) benign(0.003) TCGA-EE-A2GC-06 3 164907791 164907791 C T SLITRK3 Silent p.R276R 0.20 TCGA-EE-A2GC-06 3 164907981 164907982 - A SLITRK3 Frame_Shift_Ins p.Y213Lfs*27 0.18 TCGA-EE-A2GC-06 3 167023697 167023697 C T ZBBX Missense_Mutation p.D487N 0.30 tolerated(0.3) possibly_damaging(0.613) TCGA-EE-A2GC-06 3 167189611 167189611 G A SERPINI2 Silent p.I4I 0.39 TCGA-EE-A2GC-06 3 167747027 167747027 G A GOLIM4 Silent p.I499I 0.27 TCGA-EE-A2GC-06 3 168269663 168269663 G A MIR551B RNA 0.33 TCGA-EE-A2GC-06 3 168833510 168833510 G A MECOM Missense_Mutation p.S594L 0.21 tolerated(0.12) benign(0.207) TCGA-EE-A2GC-06 3 169526514 169526514 G A LRRC34 Silent p.L53L 0.21 TCGA-EE-A2GC-06 3 169539882 169539882 A C LRRIQ4 Missense_Mutation p.N58T 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 3 170805181 170805181 C T TNIK Missense_Mutation p.G946R 0.23 tolerated(0.25) probably_damaging(0.944) TCGA-EE-A2GC-06 3 183210292 183210292 G A KLHL6 Silent p.I518I 0.33 TCGA-EE-A2GC-06 3 184298401 184298401 C T EPHB3 Missense_Mutation p.S795F 0.56 deleterious(0.02) benign(0.428) TCGA-EE-A2GC-06 3 186953908 186953908 G A MASP1 Missense_Mutation p.P584L 0.21 tolerated(0.12) benign(0.003) TCGA-EE-A2GC-06 3 187442854 187442854 G A BCL6 Missense_Mutation p.R618C 0.18 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GC-06 3 188925383 188925383 G A TPRG1 Silent p.R70R 0.44 TCGA-EE-A2GC-06 3 189586470 189586470 C T TP63 Missense_Mutation p.S365L 0.25 tolerated(0.36) benign(0.005) TCGA-EE-A2GC-06 3 189607196 189607196 C T TP63 Silent p.L525L 0.32 TCGA-EE-A2GC-06 3 189705355 189705355 C T LEPREL1 Silent p.L353L 0.24 TCGA-EE-A2GC-06 3 190026081 190026081 C T CLDN1 Silent p.G207G 0.35 TCGA-EE-A2GC-06 3 190105884 190105884 G A CLDN16 5'UTR 0.58 TCGA-EE-A2GC-06 3 190986220 190986220 C T UTS2B Nonsense_Mutation p.W115* 0.17 TCGA-EE-A2GC-06 3 193130141 193130141 C T ATP13A4 Missense_Mutation p.E1012K 0.24 tolerated(0.66) benign(0.001) TCGA-EE-A2GC-06 3 193166037 193166037 C T ATP13A4 Missense_Mutation p.E704K 0.23 tolerated(0.41) benign(0.177) TCGA-EE-A2GC-06 3 193232575 193232575 A T ATP13A4 Missense_Mutation p.V49E 0.27 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GC-06 3 194379758 194379758 G A LSG1 Silent p.F229F 0.26 TCGA-EE-A2GC-06 3 194947472 194947472 G A XXYLT1 Silent p.F206F 0.16 TCGA-EE-A2GC-06 3 195487808 195487808 C T MUC4 Missense_Mutation p.G4932E 0.15 probably_damaging(0.972) TCGA-EE-A2GC-06 3 195798339 195798339 C T TFRC Silent p.K205K 0.38 TCGA-EE-A2GC-06 3 19975515 19975515 G A EFHB 5'UTR 0.43 TCGA-EE-A2GC-06 3 21462748 21462748 G T ZNF385D Silent p.P382P 0.31 TCGA-EE-A2GC-06 3 30769582 30769582 C T GADL1 3'UTR 0.41 TCGA-EE-A2GC-06 3 35781071 35781071 T C ARPP21 Splice_Site p.X636_splice 0.25 TCGA-EE-A2GC-06 3 35833997 35833997 C T ARPP21 Missense_Mutation p.S720F 0.46 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A2GC-06 3 36422186 36422186 G A STAC Silent p.K17K 0.56 TCGA-EE-A2GC-06 3 36780021 36780021 A G DCLK3 Missense_Mutation p.F44L 0.33 tolerated(0.32) benign(0.006) TCGA-EE-A2GC-06 3 36875022 36875022 C T TRANK1 Missense_Mutation p.D1974N 0.29 tolerated(0.23) benign(0.258) TCGA-EE-A2GC-06 3 38104186 38104186 C T DLEC1 Missense_Mutation p.P330S 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 3 38141857 38141857 C T DLEC1 Silent p.A935A 0.34 TCGA-EE-A2GC-06 3 38618268 38618268 G A SCN5A Missense_Mutation p.P1132L 0.45 tolerated(0.36) benign(0.012) TCGA-EE-A2GC-06 3 38739464 38739464 C T SCN10A Silent p.E1749E 0.28 TCGA-EE-A2GC-06 3 3886591 3886591 A G LRRN1 Missense_Mutation p.D89G 0.39 tolerated(0.5) benign(0.001) TCGA-EE-A2GC-06 3 3887126 3887126 C T LRRN1 Silent p.F267F 0.40 TCGA-EE-A2GC-06 3 3887429 3887429 C T LRRN1 Silent p.I368I 0.28 TCGA-EE-A2GC-06 3 38888901 38888901 C T SCN11A Missense_Mutation p.D1554N 0.11 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A2GC-06 3 38889188 38889188 G A SCN11A Missense_Mutation p.P1458L 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 3 39227331 39227331 C T XIRP1 Missense_Mutation p.M1202I 0.27 tolerated(0.12) benign(0.016) TCGA-EE-A2GC-06 3 39229316 39229316 C T XIRP1 Missense_Mutation p.E541K 0.27 deleterious(0) possibly_damaging(0.844) TCGA-EE-A2GC-06 3 40433687 40433687 G A ENTPD3 Intron 0.29 TCGA-EE-A2GC-06 3 40498829 40498829 C T RPL14 5'Flank 0.26 TCGA-EE-A2GC-06 3 42251694 42251694 C T TRAK1 Intron 0.37 TCGA-EE-A2GC-06 3 42738519 42738519 G A HHATL Silent p.I328I 0.33 TCGA-EE-A2GC-06 3 42916831 42916831 C T CYP8B1 Missense_Mutation p.D160N 0.40 tolerated(0.21) benign(0.017) TCGA-EE-A2GC-06 3 45077104 45077104 C T CLEC3B Silent p.I99I 0.30 TCGA-EE-A2GC-06 3 45077106 45077106 C T CLEC3B Missense_Mutation p.S100L 0.30 tolerated(0.11) benign(0.103) TCGA-EE-A2GC-06 3 45718420 45718420 G - LIMD1 Frame_Shift_Del p.G634Vfs*26 0.26 TCGA-EE-A2GC-06 3 46414449 46414449 C G CCR5 Missense_Mutation p.P19R 0.38 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GC-06 3 46497331 46497331 G A LTF Missense_Mutation p.R152C 0.52 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2GC-06 3 46620795 46620795 G A TDGF1 Silent p.Q54Q 0.33 TCGA-EE-A2GC-06 3 47158225 47158225 G A SETD2 Nonsense_Mutation p.R1492* 0.38 TCGA-EE-A2GC-06 3 47385484 47385484 C T KLHL18 3'UTR 0.20 TCGA-EE-A2GC-06 3 47385550 47385550 G C KLHL18 3'UTR 0.33 TCGA-EE-A2GC-06 3 47458865 47458865 C T SCAP Missense_Mutation p.E967K 0.31 tolerated(0.06) benign(0.034) TCGA-EE-A2GC-06 3 47917353 47917353 G A MAP4 Missense_Mutation p.S715L 0.26 deleterious(0.02) possibly_damaging(0.449) TCGA-EE-A2GC-06 3 48557094 48557094 G A PFKFB4 3'UTR 0.32 TCGA-EE-A2GC-06 3 48669454 48669454 G A SLC26A6 Silent p.F203F 0.15 TCGA-EE-A2GC-06 3 48677320 48677320 C T CELSR3 Missense_Mutation p.G3233D 0.32 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A2GC-06 3 48694669 48694669 G A CELSR3 Silent p.F1287F 0.33 TCGA-EE-A2GC-06 3 48698246 48698246 G A CELSR3 Silent p.L608L 0.43 TCGA-EE-A2GC-06 3 49049302 49049302 T G WDR6 Missense_Mutation p.L142R 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 3 49148460 49148460 G A USP19 Silent p.A1154A 0.32 TCGA-EE-A2GC-06 3 49149122 49149122 G A USP19 Missense_Mutation p.P1008S 0.41 tolerated(0.48) benign(0.002) TCGA-EE-A2GC-06 3 50211350 50211350 C T SEMA3F Silent p.S79S 0.36 TCGA-EE-A2GC-06 3 50211351 50211351 C T SEMA3F Silent p.L80L 0.36 TCGA-EE-A2GC-06 3 50211681 50211681 C T SEMA3F Silent p.F118F 0.14 TCGA-EE-A2GC-06 3 50313183 50313183 G A LSMEM2 5'Flank 0.28 TCGA-EE-A2GC-06 3 50329948 50329948 G A IFRD2 5'Flank 0.32 TCGA-EE-A2GC-06 3 50395886 50395886 T C TMEM115 Silent p.V203V 0.25 TCGA-EE-A2GC-06 3 52256018 52256018 C T TLR9 Missense_Mutation p.D926N 0.37 tolerated(0.1) possibly_damaging(0.864) TCGA-EE-A2GC-06 3 52324538 52324538 C A GLYCTK Silent p.S60S 0.36 TCGA-EE-A2GC-06 3 52407021 52407021 T C DNAH1 Silent p.L2313L 0.47 TCGA-EE-A2GC-06 3 53381588 53381588 G A DCP1A 5'UTR 0.46 TCGA-EE-A2GC-06 3 53853579 53853579 T C CHDH Missense_Mutation p.T415A 0.31 tolerated(1) benign(0.001) TCGA-EE-A2GC-06 3 55922538 55922538 C T ERC2 Missense_Mutation p.E815K 0.35 tolerated(0.15) possibly_damaging(0.53) TCGA-EE-A2GC-06 3 58486760 58486760 G A KCTD6 Missense_Mutation p.G39R 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GC-06 3 58486761 58486761 G A KCTD6 Missense_Mutation p.G39E 0.24 deleterious(0.03) probably_damaging(0.928) TCGA-EE-A2GC-06 3 62142809 62142809 C T PTPRG Missense_Mutation p.R251W 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 3 62503824 62503824 C T CADPS Missense_Mutation p.R798K 0.20 deleterious(0) benign(0.067) TCGA-EE-A2GC-06 3 62535633 62535633 T C CADPS Silent p.K637K 0.41 TCGA-EE-A2GC-06 3 68788229 68788229 C T FAM19A4 Silent p.T136T 0.14 TCGA-EE-A2GC-06 3 69168726 69168726 C T LMOD3 Silent p.L260L 0.35 TCGA-EE-A2GC-06 3 73004310 73004310 C A GXYLT2 Missense_Mutation p.P221H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 3 7721838 7721838 C T GRM7 Missense_Mutation p.P852S 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 3 8607115 8607115 C T LMCD1 Intron 0.31 TCGA-EE-A2GC-06 3 88040765 88040765 G A HTR1F Missense_Mutation p.R289Q 0.49 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2GC-06 3 9166511 9166511 A G SRGAP3 Missense_Mutation p.F53S 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 3 96706657 96706657 C T EPHA6 Missense_Mutation p.P312S 0.05 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2GC-06 3 97806859 97806859 G A OR5AC2 Silent p.T281T 0.11 TCGA-EE-A2GC-06 3 98001872 98001872 C T OR5H2 Silent p.N47N 0.51 TCGA-EE-A2GC-06 3 98073291 98073291 G A OR5K4 Missense_Mutation p.M198I 0.48 tolerated(0.19) benign(0.029) TCGA-EE-A2GC-06 3 98188480 98188480 C T OR5K1 Silent p.H20H 0.58 TCGA-EE-A2GC-06 3 99567727 99567727 C T FILIP1L Silent p.T931T 0.23 TCGA-EE-A2GC-06 3 9960203 9960203 C T IL17RC Silent p.V196V 0.32 TCGA-EE-A2GC-06 3 9962642 9962642 C T IL17RC Missense_Mutation p.P275L 0.30 deleterious(0.02) benign(0.02) TCGA-EE-A2GC-06 4 100231942 100231942 G A ADH1B Silent p.D361D 0.24 TCGA-EE-A2GC-06 4 100232053 100232053 C T ADH1B Silent p.K324K 0.42 TCGA-EE-A2GC-06 4 100234992 100234992 G A ADH1B Missense_Mutation p.R272W 0.40 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A2GC-06 4 100504772 100504772 T A MTTP Intron 0.60 TCGA-EE-A2GC-06 4 101401114 101401114 C T EMCN Silent p.Q49Q 0.35 TCGA-EE-A2GC-06 4 102946432 102946432 G A BANK1 Missense_Mutation p.E454K 0.40 tolerated(0.11) benign(0.001) TCGA-EE-A2GC-06 4 103987640 103987640 C T SLC9B2 Missense_Mutation p.G39S 0.29 tolerated(0.4) benign(0.002) TCGA-EE-A2GC-06 4 104065532 104065532 C T CENPE Missense_Mutation p.E1701K 0.24 possibly_damaging(0.881) TCGA-EE-A2GC-06 4 104577409 104577409 C T TACR3 Missense_Mutation p.G277E 0.33 deleterious(0.04) probably_damaging(0.924) TCGA-EE-A2GC-06 4 104640604 104640604 G A TACR3 Nonsense_Mutation p.Q77* 0.32 TCGA-EE-A2GC-06 4 107846989 107846989 C T DKK2 Missense_Mutation p.G114S 0.37 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A2GC-06 4 109670491 109670491 C T ETNPPL Missense_Mutation p.G277E 0.31 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2GC-06 4 109681429 109681429 G A ETNPPL Silent p.P30P 0.43 TCGA-EE-A2GC-06 4 110662218 110662218 G A CFI Missense_Mutation p.P528L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 111398065 111398065 G A ENPEP Silent p.K165K 0.35 TCGA-EE-A2GC-06 4 113108109 113108109 G C C4orf32 3'UTR 0.38 TCGA-EE-A2GC-06 4 114179525 114179525 C T ANK2 Silent p.L448L 0.20 TCGA-EE-A2GC-06 4 115997281 115997281 G A NDST4 Silent p.I304I 0.19 TCGA-EE-A2GC-06 4 119659531 119659531 A G SEC24D Missense_Mutation p.F794S 0.45 deleterious(0.05) probably_damaging(0.958) TCGA-EE-A2GC-06 4 119951596 119951596 G A SYNPO2 Missense_Mutation p.E556K 0.28 deleterious(0.02) benign(0.138) TCGA-EE-A2GC-06 4 122835986 122835986 G A TRPC3 Silent p.A430A 0.37 TCGA-EE-A2GC-06 4 122835987 122835987 G A TRPC3 Missense_Mutation p.A430V 0.38 tolerated(0.14) benign(0.032) TCGA-EE-A2GC-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.31 probably_damaging(0.999) TCGA-EE-A2GC-06 4 125590189 125590189 C T ANKRD50 Missense_Mutation p.E1415K 0.22 deleterious_low_confidence(0.01) benign(0.091) TCGA-EE-A2GC-06 4 126411253 126411253 C T FAT4 Missense_Mutation p.P4426S 0.40 benign(0.293) TCGA-EE-A2GC-06 4 128564862 128564862 C T INTU Silent p.L111L 0.37 TCGA-EE-A2GC-06 4 128732671 128732671 C T HSPA4L Silent p.I486I 0.32 TCGA-EE-A2GC-06 4 1305894 1305894 C T MAEA Missense_Mutation p.S66F 0.36 deleterious(0.02) benign(0.139) TCGA-EE-A2GC-06 4 13338967 13338967 G A HSP90AB2P RNA 0.18 TCGA-EE-A2GC-06 4 13604873 13604873 G A BOD1L1 Silent p.N1217N 0.34 TCGA-EE-A2GC-06 4 138449647 138449647 C T PCDH18 Missense_Mutation p.G909R 0.36 deleterious(0.03) possibly_damaging(0.736) TCGA-EE-A2GC-06 4 138449706 138449706 C T PCDH18 Missense_Mutation p.R889Q 0.16 tolerated(0.06) benign(0.195) TCGA-EE-A2GC-06 4 138452065 138452065 C T PCDH18 Missense_Mutation p.G393E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.31 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A2GC-06 4 139100404 139100404 C T SLC7A11 Missense_Mutation p.D471N 0.37 tolerated(0.52) benign(0.012) TCGA-EE-A2GC-06 4 139980139 139980139 A C ELF2 Nonstop_Mutation p.*582Eext*17 0.41 TCGA-EE-A2GC-06 4 140625340 140625340 C T MGST2 3'UTR 0.38 TCGA-EE-A2GC-06 4 141317292 141317292 C T CLGN Missense_Mutation p.E318K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 4 144922345 144922345 C T GYPB Silent p.Q43Q 0.29 TCGA-EE-A2GC-06 4 145567837 145567837 A C HHIP Missense_Mutation p.M4L 0.36 tolerated_low_confidence(0.32) unknown(0) TCGA-EE-A2GC-06 4 148575007 148575007 A G PRMT10 Missense_Mutation p.S681P 0.18 deleterious(0.04) possibly_damaging(0.811) TCGA-EE-A2GC-06 4 151356790 151356790 G A LRBA Missense_Mutation p.S2342L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 4 152058918 152058918 A G SH3D19 Missense_Mutation p.I541T 0.32 tolerated(1) benign(0) TCGA-EE-A2GC-06 4 155241618 155241618 C T DCHS2 Missense_Mutation p.D1190N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 15538613 15538613 T C CC2D2A Silent p.L560L 0.31 TCGA-EE-A2GC-06 4 155530823 155530823 C T FGG Missense_Mutation p.E209K 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 155665582 155665582 G A LRAT Missense_Mutation p.G35E 0.35 tolerated(1) benign(0.001) TCGA-EE-A2GC-06 4 155749241 155749241 G A RBM46 3'UTR 0.31 TCGA-EE-A2GC-06 4 15607372 15607372 G A FBXL5 Nonsense_Mutation p.R684* 0.26 TCGA-EE-A2GC-06 4 156618194 156618194 C T GUCY1A3 Missense_Mutation p.L59F 0.41 tolerated_low_confidence(0.17) benign(0.089) TCGA-EE-A2GC-06 4 156629446 156629446 G A GUCY1A3 Missense_Mutation p.G126R 0.26 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GC-06 4 158058004 158058004 G A GLRB Missense_Mutation p.M192I 0.16 deleterious(0.04) benign(0.027) TCGA-EE-A2GC-06 4 158281129 158281129 G A GRIA2 Missense_Mutation p.E709K 0.28 tolerated(0.06) probably_damaging(0.937) TCGA-EE-A2GC-06 4 15938050 15938050 C T FGFBP1 Missense_Mutation p.R69K 0.35 tolerated(0.21) benign(0.071) TCGA-EE-A2GC-06 4 159782870 159782870 C T FNIP2 Silent p.S469S 0.33 TCGA-EE-A2GC-06 4 162306830 162306830 A T FSTL5 3'UTR 0.33 TCGA-EE-A2GC-06 4 164247270 164247270 C T NPY1R Missense_Mutation p.R146Q 0.32 tolerated(0.1) benign(0.232) TCGA-EE-A2GC-06 4 164272789 164272789 G A NPY5R 3'UTR 0.46 TCGA-EE-A2GC-06 4 164393863 164393863 G A TKTL2 Silent p.L342L 0.41 TCGA-EE-A2GC-06 4 166388870 166388870 C T CPE Nonsense_Mutation p.R179* 0.25 TCGA-EE-A2GC-06 4 166405696 166405696 G A CPE Missense_Mutation p.D305N 0.32 tolerated(0.58) probably_damaging(0.999) TCGA-EE-A2GC-06 4 166913967 166913967 G A TLL1 Missense_Mutation p.D98N 0.31 tolerated(0.18) benign(0.001) TCGA-EE-A2GC-06 4 166946521 166946521 C T TLL1 Missense_Mutation p.P366S 0.37 deleterious(0.04) possibly_damaging(0.739) TCGA-EE-A2GC-06 4 169176899 169176899 G A DDX60 Nonsense_Mutation p.R1174* 0.21 TCGA-EE-A2GC-06 4 169212958 169212958 C T DDX60 Missense_Mutation p.A328T 0.37 deleterious(0.03) probably_damaging(0.931) TCGA-EE-A2GC-06 4 169279186 169279186 C T DDX60L 3'UTR 0.38 TCGA-EE-A2GC-06 4 169279421 169279421 G A DDX60L Silent p.S1666S 0.28 TCGA-EE-A2GC-06 4 169433541 169433541 G A PALLD Missense_Mutation p.G296R 0.30 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GC-06 4 169632817 169632817 G A PALLD Silent p.L569L 0.31 TCGA-EE-A2GC-06 4 169815749 169815749 G A PALLD Missense_Mutation p.R707K 0.44 tolerated(1) possibly_damaging(0.719) TCGA-EE-A2GC-06 4 174225180 174225180 C T GALNT7 Missense_Mutation p.P434S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 4 177608341 177608341 C T VEGFC Missense_Mutation p.S382N 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 4 177648941 177648941 G A VEGFC Silent p.L181L 0.37 TCGA-EE-A2GC-06 4 183522081 183522081 A G TENM3 Silent p.Q172Q 0.40 TCGA-EE-A2GC-06 4 183675766 183675766 C T TENM3 Silent p.L1416L 0.24 TCGA-EE-A2GC-06 4 183714840 183714840 C T TENM3 Missense_Mutation p.H2339Y 0.41 deleterious(0.02) benign(0.403) TCGA-EE-A2GC-06 4 185039019 185039019 C T ENPP6 Missense_Mutation p.E190K 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 4 187455424 187455424 C T MTNR1A Missense_Mutation p.A158T 0.31 deleterious(0.03) possibly_damaging(0.665) TCGA-EE-A2GC-06 4 187534477 187534477 G A FAT1 Silent p.T3083T 0.39 TCGA-EE-A2GC-06 4 189012773 189012773 G A TRIML2 Silent p.P306P 0.35 TCGA-EE-A2GC-06 4 20591326 20591326 G A SLIT2 Missense_Mutation p.D1050N 0.36 tolerated(0.22) probably_damaging(0.999) TCGA-EE-A2GC-06 4 20611720 20611720 G A SLIT2 Silent p.G1259G 0.32 TCGA-EE-A2GC-06 4 25019647 25019647 C T LGI2 Missense_Mutation p.D207N 0.35 deleterious(0.03) possibly_damaging(0.628) TCGA-EE-A2GC-06 4 25370812 25370812 A C ZCCHC4 3'UTR 0.38 TCGA-EE-A2GC-06 4 25803907 25803907 G A SEL1L3 Nonsense_Mutation p.Q652* 0.31 TCGA-EE-A2GC-06 4 26483297 26483297 G A CCKAR Missense_Mutation p.S417L 0.34 deleterious(0) possibly_damaging(0.803) TCGA-EE-A2GC-06 4 36162209 36162209 G A ARAP2 Nonsense_Mutation p.Q772* 0.15 TCGA-EE-A2GC-06 4 38775644 38775644 G A TLR10 Missense_Mutation p.P523L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 39482109 39482109 C T LIAS 3'Flank 0.33 TCGA-EE-A2GC-06 4 40356621 40356621 C T CHRNA9 3'UTR 0.33 TCGA-EE-A2GC-06 4 40427920 40427920 C T RBM47 3'UTR 0.45 TCGA-EE-A2GC-06 4 42895461 42895461 G A GRXCR1 Missense_Mutation p.G60R 0.31 tolerated(0.7) benign(0.364) TCGA-EE-A2GC-06 4 46067417 46067417 C T GABRG1 Missense_Mutation p.R169Q 0.35 deleterious(0) benign(0.252) TCGA-EE-A2GC-06 4 47427844 47427844 G A GABRB1 Missense_Mutation p.E412K 0.19 tolerated(0.65) benign(0.017) TCGA-EE-A2GC-06 4 48147206 48147206 G A TEC Missense_Mutation p.L454F 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 48381736 48381736 C T SLAIN2 Missense_Mutation p.P245S 0.31 tolerated(0.07) benign(0.067) TCGA-EE-A2GC-06 4 520928 520928 C T PIGG Silent p.L724L 0.37 TCGA-EE-A2GC-06 4 54364864 54364864 G A LNX1 Missense_Mutation p.R308C 0.40 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GC-06 4 55129833 55129833 G A PDGFRA Splice_Site p.X123_splice 0.47 TCGA-EE-A2GC-06 4 55968569 55968569 G A KDR Silent p.I698I 0.34 TCGA-EE-A2GC-06 4 55981484 55981484 G A KDR Silent p.L151L 0.32 TCGA-EE-A2GC-06 4 57182498 57182498 C T KIAA1211 Missense_Mutation p.P944S 0.21 tolerated(0.35) possibly_damaging(0.803) TCGA-EE-A2GC-06 4 57860959 57860961 ATC - POLR2B In_Frame_Del p.D168_R169delinsG 0.28 TCGA-EE-A2GC-06 4 57873037 57873037 C T POLR2B Nonsense_Mutation p.R425* 0.27 TCGA-EE-A2GC-06 4 59432 59432 G A ZNF595 Missense_Mutation p.R38K 0.07 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-EE-A2GC-06 4 65145804 65145804 G A TECRL Missense_Mutation p.P360S 0.35 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 4 6590783 6590783 C T MAN2B2 Silent p.F192F 0.26 TCGA-EE-A2GC-06 4 69512738 69512738 G A UGT2B15 3'UTR 0.31 TCGA-EE-A2GC-06 4 69536055 69536055 G A UGT2B15 Silent p.L94L 0.18 TCGA-EE-A2GC-06 4 70146558 70146558 G A UGT2B28 Missense_Mutation p.E114K 0.42 tolerated(0.53) benign(0.02) TCGA-EE-A2GC-06 4 70359494 70359494 C T UGT2B4 Missense_Mutation p.D263N 0.33 tolerated(0.06) benign(0.118) TCGA-EE-A2GC-06 4 70504802 70504802 G A UGT2A2 Missense_Mutation p.S186L 0.36 tolerated(0.47) benign(0.136) TCGA-EE-A2GC-06 4 70504957 70504957 G A UGT2A2 Silent p.L134L 0.40 TCGA-EE-A2GC-06 4 70512791 70512791 G A UGT2A1 Missense_Mutation p.S191F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 4 70709918 70709918 C T SULT1E1 Missense_Mutation p.E245K 0.30 tolerated(0.47) benign(0.005) TCGA-EE-A2GC-06 4 70723286 70723286 T A SULT1E1 Missense_Mutation p.Y26F 0.47 tolerated(0.49) benign(0.001) TCGA-EE-A2GC-06 4 70897700 70897700 C G HTN3 Missense_Mutation p.A19G 0.52 deleterious_low_confidence(0.04) possibly_damaging(0.567) TCGA-EE-A2GC-06 4 71201163 71201163 C T CABS1 Missense_Mutation p.S136F 0.41 deleterious(0.01) possibly_damaging(0.85) TCGA-EE-A2GC-06 4 71201181 71201181 A C CABS1 Missense_Mutation p.E142A 0.42 deleterious(0) possibly_damaging(0.583) TCGA-EE-A2GC-06 4 71232465 71232465 C T SMR3A Silent p.P53P 0.36 TCGA-EE-A2GC-06 4 71346720 71346720 C T MUC7 Missense_Mutation p.P87S 0.41 tolerated(0.12) possibly_damaging(0.483) TCGA-EE-A2GC-06 4 71396865 71396865 G A AMTN Missense_Mutation p.G156E 0.39 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GC-06 4 72400022 72400022 C T SLC4A4 Missense_Mutation p.P787S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 73013082 73013082 C T NPFFR2 Silent p.I374I 0.26 TCGA-EE-A2GC-06 4 74357600 74357600 G A AFM Missense_Mutation p.M285I 0.29 tolerated(0.28) benign(0.046) TCGA-EE-A2GC-06 4 74847172 74847172 C T PF4 Silent p.V60V 0.17 TCGA-EE-A2GC-06 4 74847220 74847220 C T PF4 Silent p.V44V 0.35 TCGA-EE-A2GC-06 4 74863790 74863790 C T CXCL5 Missense_Mutation p.E89K 0.36 tolerated(0.32) possibly_damaging(0.676) TCGA-EE-A2GC-06 4 76489606 76489606 C T C4orf26 Missense_Mutation p.P132S 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-EE-A2GC-06 4 77676179 77676179 C T SHROOM3 Missense_Mutation p.P1515S 0.39 tolerated(0.05) benign(0.209) TCGA-EE-A2GC-06 4 77949800 77949800 A G SEPT11 Silent p.E324E 0.38 TCGA-EE-A2GC-06 4 78650093 78650093 G A CNOT6L Silent p.A389A 0.35 TCGA-EE-A2GC-06 4 78650094 78650094 G A CNOT6L Missense_Mutation p.A389V 0.36 tolerated(0.58) probably_damaging(0.951) TCGA-EE-A2GC-06 4 79205703 79205703 G A FRAS1 Splice_Site p.X467_splice 0.33 TCGA-EE-A2GC-06 4 79308708 79308708 C T FRAS1 Silent p.I1276I 0.42 TCGA-EE-A2GC-06 4 79366681 79366681 C T FRAS1 Missense_Mutation p.R1891C 0.27 possibly_damaging(0.582) TCGA-EE-A2GC-06 4 79366899 79366899 C T FRAS1 Intron 0.41 TCGA-EE-A2GC-06 4 79369340 79369340 C T FRAS1 Silent p.V2048V 0.35 TCGA-EE-A2GC-06 4 80328028 80328028 G A GK2 Missense_Mutation p.H443Y 0.42 deleterious(0.04) benign(0.002) TCGA-EE-A2GC-06 4 80328648 80328648 G A GK2 Missense_Mutation p.S236F 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 4 81196108 81196108 G A FGF5 Missense_Mutation p.R134Q 0.43 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A2GC-06 4 82125919 82125919 G A PRKG2 Nonsense_Mutation p.Q95* 0.33 TCGA-EE-A2GC-06 4 8229718 8229718 C T SH3TC1 Missense_Mutation p.S766F 0.42 deleterious(0) benign(0.435) TCGA-EE-A2GC-06 4 8394118 8394118 G A ACOX3 Silent p.T414T 0.39 TCGA-EE-A2GC-06 4 84029078 84029078 C T PLAC8 5'UTR 0.47 TCGA-EE-A2GC-06 4 84339276 84339276 G A HELQ Silent p.I1011I 0.32 TCGA-EE-A2GC-06 4 843549 843549 G A GAK Missense_Mutation p.P1283L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 4 8469918 8469918 C T TRMT44 Missense_Mutation p.P591L 0.28 deleterious(0.01) benign(0.323) TCGA-EE-A2GC-06 4 85416951 85416951 C T NKX6-1 Silent p.T239T 0.20 TCGA-EE-A2GC-06 4 85419084 85419084 C T NKX6-1 Missense_Mutation p.D100N 0.45 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A2GC-06 4 85562059 85562059 C T CDS1 Silent p.S316S 0.36 TCGA-EE-A2GC-06 4 86863241 86863241 G A ARHGAP24 Silent p.E138E 0.33 TCGA-EE-A2GC-06 4 87023061 87023061 C T MAPK10 Missense_Mutation p.G184R 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GC-06 4 88959628 88959628 C T PKD2 Missense_Mutation p.P357S 0.32 tolerated(0.35) benign(0.248) TCGA-EE-A2GC-06 4 90816609 90816609 G A MMRN1 Missense_Mutation p.G163R 0.33 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-EE-A2GC-06 4 90857605 90857605 A C MMRN1 Missense_Mutation p.H925P 0.31 deleterious(0.01) benign(0.282) TCGA-EE-A2GC-06 4 93511390 93511390 C T GRID2 Missense_Mutation p.S66L 0.16 tolerated(0.07) probably_damaging(0.933) TCGA-EE-A2GC-06 4 94344033 94344033 G A GRID2 Missense_Mutation p.E487K 0.39 deleterious(0.01) possibly_damaging(0.819) TCGA-EE-A2GC-06 4 9828093 9828093 C T SLC2A9 Silent p.R517R 0.32 TCGA-EE-A2GC-06 4 9828100 9828100 G A SLC2A9 Missense_Mutation p.S515F 0.33 deleterious(0) benign(0.418) TCGA-EE-A2GC-06 5 101794093 101794093 G A SLCO6A1 Missense_Mutation p.A375V 0.35 tolerated(0.19) benign(0.014) TCGA-EE-A2GC-06 5 10981905 10981905 C T CTNND2 Missense_Mutation p.E1133K 0.14 deleterious(0.01) benign(0.155) TCGA-EE-A2GC-06 5 10988308 10988308 C T CTNND2 Silent p.R1086R 0.28 TCGA-EE-A2GC-06 5 110428012 110428012 G A WDR36 Missense_Mutation p.R9Q 0.50 deleterious_low_confidence(0) benign(0.002) TCGA-EE-A2GC-06 5 111643176 111643176 T A EPB41L4A Missense_Mutation p.K37N 0.22 deleterious(0.03) possibly_damaging(0.87) TCGA-EE-A2GC-06 5 112154986 112154986 C T APC Silent p.T419T 0.20 TCGA-EE-A2GC-06 5 112403852 112403852 G A MCC Missense_Mutation p.L652F 0.24 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2GC-06 5 112769798 112769798 C T TSSK1B Missense_Mutation p.D247N 0.47 tolerated(0.09) possibly_damaging(0.549) TCGA-EE-A2GC-06 5 114469656 114469656 C T TRIM36 Missense_Mutation p.E479K 0.21 deleterious(0.01) possibly_damaging(0.699) TCGA-EE-A2GC-06 5 115142174 115142174 C T CDO1 Missense_Mutation p.E149K 0.30 tolerated(0.1) probably_damaging(0.933) TCGA-EE-A2GC-06 5 118484798 118484798 C T DMXL1 Silent p.V1092V 0.41 TCGA-EE-A2GC-06 5 118969733 118969733 C T FAM170A Missense_Mutation p.P97L 0.49 tolerated(0.49) benign(0.014) TCGA-EE-A2GC-06 5 1208876 1208876 C T SLC6A19 Missense_Mutation p.P73L 0.27 deleterious(0.02) benign(0.44) TCGA-EE-A2GC-06 5 121759037 121759037 C T SNCAIP Missense_Mutation p.S202F 0.17 deleterious(0) benign(0.372) TCGA-EE-A2GC-06 5 1232870 1232870 G A SLC6A18 Silent p.L102L 0.36 TCGA-EE-A2GC-06 5 1239651 1239651 C T SLC6A18 Silent p.I273I 0.15 TCGA-EE-A2GC-06 5 1242957 1242957 C T SLC6A18 Silent p.L370L 0.34 TCGA-EE-A2GC-06 5 125801165 125801165 C T GRAMD3 Missense_Mutation p.S59L 0.17 tolerated(0.06) benign(0.022) TCGA-EE-A2GC-06 5 127664510 127664510 A G FBN2 Missense_Mutation p.V1450A 0.61 tolerated(0.06) benign(0.02) TCGA-EE-A2GC-06 5 128302248 128302248 C T SLC27A6 Missense_Mutation p.R140C 0.24 deleterious(0.01) benign(0.12) TCGA-EE-A2GC-06 5 128320951 128320951 G A SLC27A6 Missense_Mutation p.E203K 0.21 tolerated(0.23) benign(0.004) TCGA-EE-A2GC-06 5 128351643 128351643 G A SLC27A6 Nonsense_Mutation p.W345* 0.20 TCGA-EE-A2GC-06 5 131307271 131307271 C T ACSL6 Missense_Mutation p.G469E 0.44 tolerated(0.06) possibly_damaging(0.46) TCGA-EE-A2GC-06 5 131940662 131940662 G A RAD50 Missense_Mutation p.E897K 0.32 deleterious(0.02) benign(0.169) TCGA-EE-A2GC-06 5 132159717 132159717 C T SHROOM1 Missense_Mutation p.V546I 0.34 deleterious(0.04) benign(0.146) TCGA-EE-A2GC-06 5 132223257 132223273 CAAGTAATTCTTTAGCT - AFF4 Frame_Shift_Del p.K982Sfs*9 0.22 TCGA-EE-A2GC-06 5 132939627 132939627 G A FSTL4 Silent p.S16S 0.43 TCGA-EE-A2GC-06 5 133644076 133644076 G A CDKL3 Missense_Mutation p.P373S 0.46 tolerated(0.84) benign(0.004) TCGA-EE-A2GC-06 5 134344644 134344644 C T CATSPER3 Silent p.F263F 0.39 TCGA-EE-A2GC-06 5 134347235 134347235 C T CATSPER3 Silent p.I373I 0.28 TCGA-EE-A2GC-06 5 135583173 135583173 G A TRPC7 Silent p.N610N 0.61 TCGA-EE-A2GC-06 5 135692364 135692364 G A TRPC7 Missense_Mutation p.P238S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 5 137206287 137206287 G A MYOT 5'UTR 0.51 TCGA-EE-A2GC-06 5 13721235 13721235 C T DNAH5 Missense_Mutation p.M4051I 0.29 benign(0.072) TCGA-EE-A2GC-06 5 13735322 13735322 G A DNAH5 Silent p.F3893F 0.36 TCGA-EE-A2GC-06 5 137761259 137761259 G A KDM3B Missense_Mutation p.E1467K 0.12 deleterious(0) possibly_damaging(0.684) TCGA-EE-A2GC-06 5 137844008 137844008 G A ETF1 Missense_Mutation p.L434F 0.44 tolerated(0.35) benign(0.005) TCGA-EE-A2GC-06 5 13793798 13793798 C T DNAH5 Missense_Mutation p.G2684R 0.26 probably_damaging(0.988) TCGA-EE-A2GC-06 5 13871769 13871769 C T DNAH5 Missense_Mutation p.E1168K 0.36 benign(0.292) TCGA-EE-A2GC-06 5 139251314 139251314 G A NRG2 Silent p.L368L 0.25 TCGA-EE-A2GC-06 5 139866626 139866626 C T ANKHD1 Silent p.A742A 0.16 TCGA-EE-A2GC-06 5 140166766 140166766 C T PCDHA1 Silent p.S297S 0.18 TCGA-EE-A2GC-06 5 140167623 140167623 G A PCDHA1 Missense_Mutation p.R583Q 0.44 tolerated_low_confidence(0.11) benign(0.186) TCGA-EE-A2GC-06 5 140167914 140167914 C T PCDHA1 Missense_Mutation p.S680L 0.21 tolerated_low_confidence(0.1) benign(0.018) TCGA-EE-A2GC-06 5 140175770 140175770 G A PCDHA2 Silent p.L407L 0.26 TCGA-EE-A2GC-06 5 140188434 140188434 C T PCDHA4 Silent p.F554F 0.52 TCGA-EE-A2GC-06 5 140208807 140208807 C T PCDHA6 Silent p.L377L 0.21 TCGA-EE-A2GC-06 5 140229665 140229665 G A PCDHA9 Missense_Mutation p.E529K 0.40 tolerated_low_confidence(0.07) benign(0.304) TCGA-EE-A2GC-06 5 140237445 140237445 G C PCDHA10 Silent p.A604A 0.45 TCGA-EE-A2GC-06 5 140249015 140249015 C T PCDHA11 Silent p.I109I 0.18 TCGA-EE-A2GC-06 5 140250440 140250440 G A PCDHA11 Silent p.V584V 0.19 TCGA-EE-A2GC-06 5 140308012 140308012 C T PCDHAC1 Missense_Mutation p.S512F 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 5 140516390 140516390 C T PCDHB5 Silent p.F458F 0.42 TCGA-EE-A2GC-06 5 140529943 140529943 G A PCDHB6 Silent p.L35L 0.27 TCGA-EE-A2GC-06 5 140529993 140529993 G A PCDHB6 Missense_Mutation p.G52E 0.43 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A2GC-06 5 140531273 140531273 G A PCDHB6 Missense_Mutation p.G479S 0.48 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-EE-A2GC-06 5 140553181 140553181 C T PCDHB7 Silent p.S255S 0.20 TCGA-EE-A2GC-06 5 140557970 140557970 C T PCDHB8 Nonsense_Mutation p.Q119* 0.20 TCGA-EE-A2GC-06 5 140558802 140558802 C A PCDHB8 Missense_Mutation p.S396Y 0.14 deleterious_low_confidence(0) benign(0.117) TCGA-EE-A2GC-06 5 140572455 140572455 G A PCDHB10 Missense_Mutation p.M110I 0.18 deleterious_low_confidence(0) benign(0.262) TCGA-EE-A2GC-06 5 140589549 140589549 C T PCDHB12 Missense_Mutation p.P357L 0.52 deleterious_low_confidence(0.02) benign(0.139) TCGA-EE-A2GC-06 5 140603430 140603430 G A PCDHB14 Missense_Mutation p.R118Q 0.21 tolerated_low_confidence(1) benign(0.004) TCGA-EE-A2GC-06 5 140724380 140724380 G A PCDHGA3 Silent p.R260R 0.41 TCGA-EE-A2GC-06 5 140725660 140725660 C T PCDHGA3 Missense_Mutation p.S687L 0.38 deleterious_low_confidence(0.01) benign(0.287) TCGA-EE-A2GC-06 5 140730451 140730451 C T PCDHGB1 Silent p.I208I 0.16 TCGA-EE-A2GC-06 5 140750236 140750236 G A PCDHGB3 Missense_Mutation p.R92Q 0.20 deleterious(0) probably_damaging(0.957) TCGA-EE-A2GC-06 5 140750280 140750280 G A PCDHGB3 Missense_Mutation p.E107K 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A2GC-06 5 140750458 140750458 C T PCDHGB3 Missense_Mutation p.S166L 0.21 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 5 140753701 140753701 C T PCDHGA6 Silent p.L17L 0.47 TCGA-EE-A2GC-06 5 140755656 140755656 C T PCDHGA6 Missense_Mutation p.P669L 0.42 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EE-A2GC-06 5 140764713 140764713 C T PCDHGA7 Silent p.F749F 0.43 TCGA-EE-A2GC-06 5 140772607 140772607 C T PCDHGA8 Missense_Mutation p.A76V 0.46 deleterious_low_confidence(0) benign(0.408) TCGA-EE-A2GC-06 5 140784004 140784004 C T PCDHGA9 Silent p.T495T 0.43 TCGA-EE-A2GC-06 5 140795153 140795153 C T PCDHGA10 Missense_Mutation p.P804L 0.17 tolerated_low_confidence(0.64) benign(0.001) TCGA-EE-A2GC-06 5 140858107 140858107 C T PCDHGC3 Silent p.P808P 0.38 TCGA-EE-A2GC-06 5 140896445 140896445 G A DIAPH1 Silent p.A1264A 0.43 TCGA-EE-A2GC-06 5 140896446 140896446 G A DIAPH1 Missense_Mutation p.A1264V 0.42 benign(0.201) TCGA-EE-A2GC-06 5 141009672 141009672 A G HDAC3 Missense_Mutation p.F101S 0.45 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GC-06 5 143586587 143586587 G A KCTD16 Missense_Mutation p.G104R 0.24 tolerated(0.12) probably_damaging(1) TCGA-EE-A2GC-06 5 1441550 1441550 G A SLC6A3 Silent p.F114F 0.38 TCGA-EE-A2GC-06 5 145383698 145383698 C T SH3RF2 Silent p.F242F 0.32 TCGA-EE-A2GC-06 5 145464078 145464078 G A PLAC8L1 Nonsense_Mutation p.Q151* 0.31 TCGA-EE-A2GC-06 5 145524223 145524223 G A LARS Missense_Mutation p.S518L 0.39 deleterious(0) possibly_damaging(0.862) TCGA-EE-A2GC-06 5 147716007 147716007 G A SPINK9 Silent p.T26T 0.19 TCGA-EE-A2GC-06 5 147889316 147889316 G A HTR4 Missense_Mutation p.T260I 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 5 148727972 148727972 A T GRPEL2 Missense_Mutation p.E72V 0.51 deleterious(0.01) possibly_damaging(0.562) TCGA-EE-A2GC-06 5 149212709 149212709 C T PPARGC1B Missense_Mutation p.P358L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 5 149263002 149263002 C T PDE6A Missense_Mutation p.E709K 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GC-06 5 149276015 149276015 G A PDE6A Silent p.F508F 0.23 TCGA-EE-A2GC-06 5 149359901 149359901 T A SLC26A2 Missense_Mutation p.S249T 0.18 tolerated(0.23) probably_damaging(1) TCGA-EE-A2GC-06 5 149456941 149456941 G A CSF1R Missense_Mutation p.L263F 0.43 tolerated(0.06) benign(0.101) TCGA-EE-A2GC-06 5 150027812 150027812 C T SYNPO Missense_Mutation p.P236L 0.35 deleterious(0.03) possibly_damaging(0.564) TCGA-EE-A2GC-06 5 150080667 150080667 C T RBM22 5'UTR 0.75 TCGA-EE-A2GC-06 5 150322137 150322137 C T ZNF300P1 RNA 0.23 TCGA-EE-A2GC-06 5 150682794 150682794 C T SLC36A3 Missense_Mutation p.G41E 0.12 deleterious(0.01) possibly_damaging(0.787) TCGA-EE-A2GC-06 5 150908800 150908800 G A FAT2 Missense_Mutation p.P3322L 0.46 benign(0.001) TCGA-EE-A2GC-06 5 151777675 151777675 C T NMUR2 Missense_Mutation p.E253K 0.36 tolerated(0.48) benign(0.058) TCGA-EE-A2GC-06 5 153085405 153085405 C T GRIA1 Missense_Mutation p.P544L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 5 153190743 153190743 G A GRIA1 Missense_Mutation p.M903I 0.20 tolerated_low_confidence(0.4) benign(0.011) TCGA-EE-A2GC-06 5 154278121 154278121 G A GEMIN5 Missense_Mutation p.A1075V 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 5 156590459 156590459 C T FAM71B Missense_Mutation p.G273R 0.24 deleterious(0.03) possibly_damaging(0.881) TCGA-EE-A2GC-06 5 156608032 156608032 C T ITK Missense_Mutation p.S15F 0.19 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GC-06 5 156635902 156635902 G A ITK Silent p.K47K 0.38 TCGA-EE-A2GC-06 5 156636002 156636002 C T ITK Nonsense_Mutation p.Q81* 0.47 TCGA-EE-A2GC-06 5 156641321 156641321 A G ITK Missense_Mutation p.T149A 0.25 tolerated(0.51) benign(0.001) TCGA-EE-A2GC-06 5 156908821 156908821 G A ADAM19 Missense_Mutation p.P894L 0.62 deleterious(0.01) possibly_damaging(0.818) TCGA-EE-A2GC-06 5 158588447 158588447 T A RNF145 Missense_Mutation p.M515L 0.29 tolerated(0.06) benign(0.102) TCGA-EE-A2GC-06 5 159776189 159776189 G A C1QTNF2 Missense_Mutation p.P327S 0.50 tolerated_low_confidence(0.06) benign(0.444) TCGA-EE-A2GC-06 5 159996682 159996682 G A ATP10B Silent p.F1253F 0.15 TCGA-EE-A2GC-06 5 160049461 160049461 G A ATP10B Silent p.F584F 0.25 TCGA-EE-A2GC-06 5 160063273 160063273 G A ATP10B Silent p.F348F 0.42 TCGA-EE-A2GC-06 5 160838060 160838060 G A GABRB2 Silent p.I154I 0.50 TCGA-EE-A2GC-06 5 16474881 16474881 C T FAM134B Missense_Mutation p.G488D 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 5 167674649 167674649 G A TENM2 Silent p.L2235L 0.45 TCGA-EE-A2GC-06 5 167990990 167990990 G A PANK3 Missense_Mutation p.S239F 0.19 deleterious(0.01) benign(0.064) TCGA-EE-A2GC-06 5 168093533 168093533 G A SLIT3 Nonsense_Mutation p.Q1500* 0.45 TCGA-EE-A2GC-06 5 169532974 169532974 G A FOXI1 Missense_Mutation p.D5N 0.64 tolerated(0.1) benign(0.043) TCGA-EE-A2GC-06 5 169535193 169535193 C T FOXI1 Missense_Mutation p.P239S 0.35 tolerated(0.73) benign(0) TCGA-EE-A2GC-06 5 169675573 169675573 G A LCP2 3'UTR 0.33 TCGA-EE-A2GC-06 5 170148787 170148787 C T KCNIP1 Intron 0.40 TCGA-EE-A2GC-06 5 170222365 170222365 G A GABRP Missense_Mutation p.E132K 0.39 tolerated(0.12) benign(0.004) TCGA-EE-A2GC-06 5 17354287 17354287 G A CTD-2139B15.2 RNA 0.27 TCGA-EE-A2GC-06 5 174936039 174936039 G A SFXN1 Missense_Mutation p.G57R 0.45 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A2GC-06 5 176053763 176053763 C T SNCB Splice_Site p.X41_splice 0.47 TCGA-EE-A2GC-06 5 176696747 176696747 G A NSD1 Missense_Mutation p.M1816I 0.14 deleterious(0.03) possibly_damaging(0.47) TCGA-EE-A2GC-06 5 176764494 176764494 T G LMAN2 Missense_Mutation p.N182T 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GC-06 5 178413621 178413621 C T GRM6 Missense_Mutation p.G545E 0.14 tolerated(0.18) possibly_damaging(0.53) TCGA-EE-A2GC-06 5 178506099 178506099 G A ZNF354C Silent p.G222G 0.24 TCGA-EE-A2GC-06 5 178548698 178548698 G A ADAMTS2 Missense_Mutation p.P1048S 0.22 tolerated(0.7) benign(0.01) TCGA-EE-A2GC-06 5 179201801 179201801 C T MAML1 Silent p.L992L 0.20 TCGA-EE-A2GC-06 5 179548090 179548090 C G RASGEF1C Silent p.L258L 0.16 TCGA-EE-A2GC-06 5 179977003 179977003 C T CNOT6 Missense_Mutation p.S62F 0.47 tolerated(0.68) benign(0.002) TCGA-EE-A2GC-06 5 180043463 180043463 C T FLT4 Silent p.R1041R 0.44 TCGA-EE-A2GC-06 5 19839129 19839129 C T CDH18 5'UTR 0.23 TCGA-EE-A2GC-06 5 21755927 21755927 C T CDH12 Missense_Mutation p.R553Q 0.41 tolerated(0.2) possibly_damaging(0.551) TCGA-EE-A2GC-06 5 21802333 21802333 C T CDH12 Missense_Mutation p.G400E 0.36 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 5 21854885 21854885 G A CDH12 Nonsense_Mutation p.Q181* 0.38 TCGA-EE-A2GC-06 5 22142560 22142560 C T CDH12 Intron 0.17 TCGA-EE-A2GC-06 5 23526462 23526462 G A PRDM9 Missense_Mutation p.R422K 0.35 tolerated(0.34) possibly_damaging(0.522) TCGA-EE-A2GC-06 5 23526840 23526840 G A PRDM9 Missense_Mutation p.G548E 0.32 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GC-06 5 23527010 23527010 G A PRDM9 Missense_Mutation p.E605K 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GC-06 5 23527680 23527680 G A PRDM9 Missense_Mutation p.G828E 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GC-06 5 26915930 26915930 G A CDH9 Missense_Mutation p.H111Y 0.38 tolerated(0.08) possibly_damaging(0.71) TCGA-EE-A2GC-06 5 31322998 31322998 C T CDH6 Silent p.I652I 0.40 TCGA-EE-A2GC-06 5 31323218 31323218 G A CDH6 Missense_Mutation p.D726N 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2GC-06 5 32091181 32091181 G A PDZD2 Missense_Mutation p.G2543R 0.28 deleterious(0.04) benign(0.097) TCGA-EE-A2GC-06 5 32385616 32385616 C T ZFR Missense_Mutation p.G880E 0.29 tolerated(0.37) unknown(0) TCGA-EE-A2GC-06 5 32385617 32385617 C T ZFR Missense_Mutation p.G880R 0.28 tolerated(0.38) unknown(0) TCGA-EE-A2GC-06 5 33947399 33947399 C T SLC45A2 Missense_Mutation p.G413R 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 5 35910596 35910596 C T CAPSL Missense_Mutation p.E63K 0.27 deleterious(0.02) possibly_damaging(0.877) TCGA-EE-A2GC-06 5 35957327 35957327 C T UGT3A1 Silent p.V346V 0.32 TCGA-EE-A2GC-06 5 35965514 35965514 C T UGT3A1 Missense_Mutation p.E273K 0.35 tolerated(0.32) benign(0.216) TCGA-EE-A2GC-06 5 35991338 35991338 A G UGT3A1 Missense_Mutation p.V2A 0.36 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GC-06 5 3599663 3599663 G A IRX1 Missense_Mutation p.E201K 0.30 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2GC-06 5 36984775 36984775 C T NIPBL Intron 0.47 TCGA-EE-A2GC-06 5 38884197 38884197 C T OSMR Silent p.I229I 0.35 TCGA-EE-A2GC-06 5 40947812 40947812 C T C7 Missense_Mutation p.L283F 0.38 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GC-06 5 40950039 40950039 C T C7 Missense_Mutation p.S339F 0.50 deleterious(0.02) possibly_damaging(0.553) TCGA-EE-A2GC-06 5 41032918 41032918 G A MROH2B Silent p.F789F 0.41 TCGA-EE-A2GC-06 5 41058177 41058177 G A MROH2B Silent p.F248F 0.31 TCGA-EE-A2GC-06 5 41149487 41149523 GATTATTTAAACATTTCTCAGCCAAAAACTTACAAGC - C6 Frame_Shift_Del p.A815Sfs*17 0.30 TCGA-EE-A2GC-06 5 41155184 41155184 A C C6 Missense_Mutation p.V664G 0.48 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GC-06 5 43246072 43246072 C T NIM1K Silent p.I65I 0.48 TCGA-EE-A2GC-06 5 43529903 43529903 G A PAIP1 Missense_Mutation p.S444F 0.34 deleterious(0.02) benign(0.38) TCGA-EE-A2GC-06 5 45262407 45262407 C T HCN1 Silent p.P763P 0.14 TCGA-EE-A2GC-06 5 49695120 49695120 G A EMB Missense_Mutation p.S324F 0.27 deleterious(0) probably_damaging(0.91) TCGA-EE-A2GC-06 5 49699165 49699165 G A EMB Nonsense_Mutation p.Q242* 0.20 TCGA-EE-A2GC-06 5 52096558 52096558 C T PELO Silent p.F110F 0.40 TCGA-EE-A2GC-06 5 52221113 52221113 C T ITGA1 Silent p.P803P 0.20 TCGA-EE-A2GC-06 5 52229771 52229771 C T ITGA1 Missense_Mutation p.P970L 0.37 deleterious(0.01) possibly_damaging(0.697) TCGA-EE-A2GC-06 5 5242225 5242225 G A ADAMTS16 Silent p.G861G 0.38 TCGA-EE-A2GC-06 5 54405854 54405854 T G GZMA Missense_Mutation p.D211E 0.59 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GC-06 5 56778202 56778202 C T ACTBL2 Silent p.L111L 0.26 TCGA-EE-A2GC-06 5 63256578 63256578 C T HTR1A Silent p.R323R 0.34 TCGA-EE-A2GC-06 5 64483855 64483855 C T ADAMTS6 Silent p.L966L 0.47 TCGA-EE-A2GC-06 5 64484034 64484034 C T ADAMTS6 Missense_Mutation p.D907N 0.38 tolerated(0.77) benign(0.02) TCGA-EE-A2GC-06 5 65288687 65288687 C T ERBB2IP Silent p.T47T 0.27 TCGA-EE-A2GC-06 5 66437978 66437978 C T MAST4 Missense_Mutation p.R844C 0.36 benign(0.17) TCGA-EE-A2GC-06 5 68902955 68902955 G A RP11-848G14.2 RNA 0.18 TCGA-EE-A2GC-06 5 74012481 74012481 A T HEXB Missense_Mutation p.E384D 0.27 deleterious(0) possibly_damaging(0.511) TCGA-EE-A2GC-06 5 76709015 76709015 C T PDE8B Missense_Mutation p.R598W 0.36 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 5 78384425 78384425 A T BHMT2 3'UTR 0.31 TCGA-EE-A2GC-06 5 79032757 79032757 C T CMYA5 Silent p.F2723F 0.48 TCGA-EE-A2GC-06 5 79033728 79033728 C T CMYA5 Missense_Mutation p.P3047L 0.37 possibly_damaging(0.833) TCGA-EE-A2GC-06 5 79357628 79357628 G A THBS4 Silent p.G366G 0.40 TCGA-EE-A2GC-06 5 79367965 79367965 G A THBS4 Intron 0.35 TCGA-EE-A2GC-06 5 82815659 82815659 G A VCAN Missense_Mutation p.E512K 0.38 deleterious(0.03) probably_damaging(0.948) TCGA-EE-A2GC-06 5 88047715 88047715 G A MEF2C Missense_Mutation p.S201F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 5 90024573 90024573 G A GPR98 Missense_Mutation p.G3417S 0.40 benign(0.054) TCGA-EE-A2GC-06 5 90055394 90055394 G A GPR98 Missense_Mutation p.E4037K 0.25 probably_damaging(0.973) TCGA-EE-A2GC-06 5 96078387 96078387 C T CAST Missense_Mutation p.A335V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 5 96320900 96320900 C T LNPEP Missense_Mutation p.T326I 0.30 tolerated(1) benign(0.012) TCGA-EE-A2GC-06 6 100403862 100403862 G A MCHR2 Silent p.L54L 0.35 TCGA-EE-A2GC-06 6 100896525 100896525 G A SIM1 Silent p.I191I 0.33 TCGA-EE-A2GC-06 6 101090562 101090562 G A ASCC3 Nonsense_Mutation p.Q1266* 0.38 TCGA-EE-A2GC-06 6 105526438 105526438 G A LIN28B Missense_Mutation p.G178E 0.22 deleterious(0.03) benign(0.242) TCGA-EE-A2GC-06 6 107389848 107389848 C A BEND3 3'UTR 0.38 TCGA-EE-A2GC-06 6 107954978 107954978 G A SOBP Silent p.K310K 0.40 TCGA-EE-A2GC-06 6 10874607 10874607 G A GCM2 Missense_Mutation p.T381I 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 6 109274371 109274371 C T ARMC2 Silent p.L578L 0.37 TCGA-EE-A2GC-06 6 10930683 10930683 G A SYCP2L Silent p.Q523Q 0.41 TCGA-EE-A2GC-06 6 109768346 109768346 C T MICAL1 Silent p.R719R 0.36 TCGA-EE-A2GC-06 6 109768347 109768347 C T MICAL1 Missense_Mutation p.R719Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GC-06 6 10990062 10990062 G A ELOVL2 Silent p.F213F 0.35 TCGA-EE-A2GC-06 6 110301318 110301318 G A GPR6 Missense_Mutation p.E335K 0.32 deleterious(0) benign(0.3) TCGA-EE-A2GC-06 6 110514442 110514442 C T CDC40 Missense_Mutation p.P83S 0.27 deleterious(0.05) probably_damaging(0.91) TCGA-EE-A2GC-06 6 112671435 112671435 C T RFPL4B Silent p.F175F 0.45 TCGA-EE-A2GC-06 6 116938244 116938244 C T RSPH4A Missense_Mutation p.S153F 0.39 tolerated_low_confidence(0.59) benign(0.035) TCGA-EE-A2GC-06 6 117113611 117113611 G A GPRC6A Silent p.I825I 0.34 TCGA-EE-A2GC-06 6 117113866 117113866 G A GPRC6A Silent p.I740I 0.42 TCGA-EE-A2GC-06 6 117128139 117128139 C T GPRC6A Silent p.E243E 0.32 TCGA-EE-A2GC-06 6 117130485 117130485 T C GPRC6A Missense_Mutation p.M164V 0.27 tolerated(0.14) benign(0.001) TCGA-EE-A2GC-06 6 117683872 117683872 C T ROS1 Missense_Mutation p.S1092N 0.36 tolerated(0.29) benign(0.023) TCGA-EE-A2GC-06 6 117686325 117686325 C T ROS1 Missense_Mutation p.E1006K 0.20 tolerated(0.08) possibly_damaging(0.873) TCGA-EE-A2GC-06 6 121481210 121481210 G A TBC1D32 Missense_Mutation p.P907S 0.35 deleterious(0.01) benign(0.249) TCGA-EE-A2GC-06 6 125397950 125397950 C T RNF217 Missense_Mutation p.R185C 0.25 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GC-06 6 125550273 125550273 G A TPD52L1 Missense_Mutation p.E49K 0.49 deleterious(0) probably_damaging(0.95) TCGA-EE-A2GC-06 6 127775036 127775036 C T KIAA0408 Missense_Mutation p.E31K 0.40 deleterious(0) probably_damaging(0.917) TCGA-EE-A2GC-06 6 127797415 127797415 C T SOGA3 Missense_Mutation p.E586K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 6 128134804 128134804 G A THEMIS Missense_Mutation p.P328S 0.16 tolerated(0.19) benign(0.187) TCGA-EE-A2GC-06 6 128150657 128150657 G A THEMIS Missense_Mutation p.L225F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 6 128150819 128150819 C T THEMIS Missense_Mutation p.G171R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 6 128176199 128176199 A G THEMIS Missense_Mutation p.F76L 0.29 tolerated(0.38) benign(0.241) TCGA-EE-A2GC-06 6 128643369 128643369 G A PTPRK Missense_Mutation p.H104Y 0.36 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GC-06 6 129637235 129637235 G A LAMA2 Missense_Mutation p.R1326Q 0.46 deleterious(0.01) benign(0.409) TCGA-EE-A2GC-06 6 130152421 130152421 C T TMEM244 3'Flank 0.30 TCGA-EE-A2GC-06 6 130535580 130535580 C T SAMD3 Missense_Mutation p.M57I 0.32 deleterious_low_confidence(0.03) benign(0.301) TCGA-EE-A2GC-06 6 132204911 132204911 C T ENPP1 Nonsense_Mutation p.Q770* 0.34 TCGA-EE-A2GC-06 6 13228132 13228132 G A PHACTR1 Missense_Mutation p.M357I 0.35 tolerated(0.19) benign(0) TCGA-EE-A2GC-06 6 13228133 13228133 G A PHACTR1 Missense_Mutation p.G358S 0.35 tolerated(0.23) benign(0.193) TCGA-EE-A2GC-06 6 132938780 132938780 C T TAAR2 Missense_Mutation p.E189K 0.44 tolerated(0.07) benign(0.107) TCGA-EE-A2GC-06 6 133013564 133013564 C T VNN1 Missense_Mutation p.G329E 0.37 tolerated(1) benign(0.004) TCGA-EE-A2GC-06 6 134491456 134491456 C T SGK1 Missense_Mutation p.E511K 0.25 tolerated(0.14) benign(0.035) TCGA-EE-A2GC-06 6 136597569 136597569 C T BCLAF1 Missense_Mutation p.G365E 0.06 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2GC-06 6 136599060 136599060 G A BCLAF1 Missense_Mutation p.S320L 0.22 tolerated(0.4) benign(0.069) TCGA-EE-A2GC-06 6 137814848 137814848 C G OLIG3 Missense_Mutation p.G154R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 6 137814849 137814849 C T OLIG3 Silent p.G153G 0.35 TCGA-EE-A2GC-06 6 142409430 142409430 G A NMBR Silent p.I122I 0.39 TCGA-EE-A2GC-06 6 143092491 143092491 G A HIVEP2 Missense_Mutation p.P1129S 0.32 tolerated(0.45) benign(0.006) TCGA-EE-A2GC-06 6 146351045 146351045 G A GRM1 Missense_Mutation p.R131Q 0.43 tolerated(0.21) possibly_damaging(0.559) TCGA-EE-A2GC-06 6 147694887 147694887 C A STXBP5 Missense_Mutation p.F1034L 0.29 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2GC-06 6 151686700 151686700 A G ZBTB2 Silent p.L501L 0.28 TCGA-EE-A2GC-06 6 151686991 151686991 G A ZBTB2 Nonsense_Mutation p.Q404* 0.33 TCGA-EE-A2GC-06 6 151686992 151686992 G A ZBTB2 Silent p.N403N 0.34 TCGA-EE-A2GC-06 6 152576878 152576878 C T SYNE1 Missense_Mutation p.G6370R 0.32 possibly_damaging(0.682) TCGA-EE-A2GC-06 6 153042887 153042887 C T MYCT1 Silent p.I69I 0.33 TCGA-EE-A2GC-06 6 154567864 154567864 G A IPCEF1 Missense_Mutation p.S36L 0.40 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GC-06 6 155148326 155148326 C T SCAF8 Missense_Mutation p.P698S 0.37 tolerated(0.51) probably_damaging(0.998) TCGA-EE-A2GC-06 6 155575493 155575493 G A TIAM2 Intron 0.47 TCGA-EE-A2GC-06 6 158497655 158497655 T A SYNJ2 Intron 0.24 TCGA-EE-A2GC-06 6 159188461 159188461 G A EZR Silent p.P476P 0.32 TCGA-EE-A2GC-06 6 159636168 159636168 G A FNDC1 Missense_Mutation p.E218K 0.38 deleterious(0.03) unknown(0) TCGA-EE-A2GC-06 6 160471555 160471555 C T IGF2R Silent p.T855T 0.38 TCGA-EE-A2GC-06 6 160828194 160828194 G A SLC22A3 Missense_Mutation p.G219R 0.30 deleterious(0.05) probably_damaging(0.979) TCGA-EE-A2GC-06 6 160829824 160829824 G A SLC22A3 Missense_Mutation p.G243E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 6 160977156 160977156 C T LPA Missense_Mutation p.R1625Q 0.22 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A2GC-06 6 161020616 161020616 G A LPA Missense_Mutation p.T1068I 0.37 tolerated(0.15) probably_damaging(0.987) TCGA-EE-A2GC-06 6 165715373 165715373 G A C6orf118 Silent p.F146F 0.36 TCGA-EE-A2GC-06 6 167711546 167711546 G A UNC93A Missense_Mutation p.G205S 0.41 tolerated(0.1) benign(0.333) TCGA-EE-A2GC-06 6 167754874 167754874 G A TTLL2 Missense_Mutation p.D496N 0.45 tolerated(0.15) benign(0.005) TCGA-EE-A2GC-06 6 168430185 168430185 C T KIF25 5'UTR 0.40 TCGA-EE-A2GC-06 6 169008841 169008841 G A SMOC2 Missense_Mutation p.E288K 0.43 tolerated(0.42) benign(0.038) TCGA-EE-A2GC-06 6 169648776 169648776 G A THBS2 Silent p.I115I 0.27 TCGA-EE-A2GC-06 6 17850608 17850608 G A KIF13A Silent p.S221S 0.35 TCGA-EE-A2GC-06 6 18186031 18186031 C T KDM1B Missense_Mutation p.P188L 0.29 tolerated(0.08) probably_damaging(1) TCGA-EE-A2GC-06 6 1961196 1961196 G A GMDS Missense_Mutation p.S117F 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GC-06 6 20490796 20490796 G A E2F3 3'UTR 0.37 TCGA-EE-A2GC-06 6 20758841 20758841 C T CDKAL1 Missense_Mutation p.R162C 0.18 deleterious(0.02) possibly_damaging(0.67) TCGA-EE-A2GC-06 6 21108659 21108659 C T CDKAL1 Missense_Mutation p.R422W 0.36 deleterious(0.01) benign(0.339) TCGA-EE-A2GC-06 6 22569694 22569694 C T HDGFL1 5'Flank 0.36 TCGA-EE-A2GC-06 6 22570498 22570498 G A HDGFL1 Missense_Mutation p.E232K 0.33 tolerated_low_confidence(0.25) benign(0.305) TCGA-EE-A2GC-06 6 24850074 24850074 G T FAM65B Silent p.I301I 0.34 TCGA-EE-A2GC-06 6 25261489 25261489 G A RP3-522P13.3 RNA 0.50 TCGA-EE-A2GC-06 6 25665236 25665236 G A SCGN Silent p.L104L 0.23 TCGA-EE-A2GC-06 6 25826732 25826732 C T SLC17A1 Missense_Mutation p.G55D 0.35 tolerated(0.1) probably_damaging(0.961) TCGA-EE-A2GC-06 6 25914867 25914867 C T SLC17A2 Silent p.G365G 0.39 TCGA-EE-A2GC-06 6 26158580 26158580 G A HIST1H2BD Silent p.G61G 0.38 TCGA-EE-A2GC-06 6 2623929 2623929 G A C6orf195 Missense_Mutation p.P43L 0.40 tolerated_low_confidence(0.58) possibly_damaging(0.851) TCGA-EE-A2GC-06 6 26285536 26285536 C T HIST1H4H Silent p.E64E 0.46 TCGA-EE-A2GC-06 6 26370597 26370597 G A BTN3A2 Missense_Mutation p.G161R 0.29 tolerated(0.17) benign(0.059) TCGA-EE-A2GC-06 6 26598587 26598587 C T ABT1 Missense_Mutation p.A178V 0.45 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GC-06 6 26598588 26598588 C T ABT1 Silent p.A178A 0.43 TCGA-EE-A2GC-06 6 28472197 28472197 G A GPX6 Missense_Mutation p.R180C 0.28 deleterious(0.05) possibly_damaging(0.489) TCGA-EE-A2GC-06 6 28539927 28539927 G A SCAND3 Missense_Mutation p.P1247S 0.35 tolerated_low_confidence(0.52) benign(0.012) TCGA-EE-A2GC-06 6 28541028 28541028 C T SCAND3 Missense_Mutation p.E880K 0.34 tolerated(0.07) possibly_damaging(0.578) TCGA-EE-A2GC-06 6 29275193 29275193 C T OR14J1 Silent p.L243L 0.34 TCGA-EE-A2GC-06 6 29598337 29598337 C T GABBR1 Missense_Mutation p.A125T 0.35 tolerated_low_confidence(1) benign(0.007) TCGA-EE-A2GC-06 6 29912088 29912088 C T HLA-A Missense_Mutation p.A270V 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-EE-A2GC-06 6 30314633 30314633 C T RPP21 3'UTR 0.35 TCGA-EE-A2GC-06 6 30569862 30569862 C T PPP1R10 Missense_Mutation p.G855E 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GC-06 6 30954633 30954633 C A MUC21 Missense_Mutation p.N227K 0.34 deleterious(0.03) unknown(0) TCGA-EE-A2GC-06 6 31557865 31557865 G A NCR3 Missense_Mutation p.R28C 0.33 tolerated(0.24) benign(0.01) TCGA-EE-A2GC-06 6 31560554 31560554 G A NCR3 5'UTR 0.31 TCGA-EE-A2GC-06 6 31612874 31612874 G A BAG6 Silent p.S412S 0.38 TCGA-EE-A2GC-06 6 31694962 31694962 C T DDAH2 3'UTR 0.32 TCGA-EE-A2GC-06 6 31779173 31779173 C T HSPA1L Missense_Mutation p.G193R 0.34 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A2GC-06 6 31913235 31913235 C T C2 3'UTR 0.36 TCGA-EE-A2GC-06 6 31915744 31915744 C T CFB Silent p.I763I 0.32 TCGA-EE-A2GC-06 6 32047087 32047087 G A RNA5SP206 5'Flank 0.33 TCGA-EE-A2GC-06 6 32052343 32052343 C T TNXB Missense_Mutation p.D1098N 0.37 probably_damaging(0.996) TCGA-EE-A2GC-06 6 32053812 32053812 G A TNXB Missense_Mutation p.L955F 0.37 possibly_damaging(0.711) TCGA-EE-A2GC-06 6 32065866 32065866 G A TNXB Missense_Mutation p.P37L 0.42 probably_damaging(0.991) TCGA-EE-A2GC-06 6 32163175 32163175 G A NOTCH4 3'UTR 0.45 TCGA-EE-A2GC-06 6 32188579 32188579 C T NOTCH4 Silent p.Q292Q 0.32 TCGA-EE-A2GC-06 6 32190850 32190850 C T NOTCH4 Silent p.G29G 0.35 TCGA-EE-A2GC-06 6 32847262 32847262 G A PPP1R2P1 RNA 0.29 TCGA-EE-A2GC-06 6 33157208 33157208 G A COL11A2 Missense_Mutation p.P41S 0.38 probably_damaging(0.986) TCGA-EE-A2GC-06 6 34494066 34494066 C T PACSIN1 5'UTR 0.37 TCGA-EE-A2GC-06 6 345884 345884 C T DUSP22 Silent p.F73F 0.16 TCGA-EE-A2GC-06 6 348878 348878 C T DUSP22 Intron 0.16 TCGA-EE-A2GC-06 6 35473911 35473911 C T TULP1 Missense_Mutation p.E290K 0.33 deleterious(0.01) benign(0.022) TCGA-EE-A2GC-06 6 35923261 35923261 G A SLC26A8 Missense_Mutation p.P634S 0.41 tolerated(0.71) benign(0.017) TCGA-EE-A2GC-06 6 35927293 35927293 C T SLC26A8 Missense_Mutation p.G603R 0.17 tolerated(0.42) benign(0.005) TCGA-EE-A2GC-06 6 36275517 36275517 C T PNPLA1 3'UTR 0.28 TCGA-EE-A2GC-06 6 3751788 3751788 G A PXDC1 5'UTR 0.56 TCGA-EE-A2GC-06 6 38690838 38690838 C T DNAH8 5'Flank 0.38 TCGA-EE-A2GC-06 6 38702293 38702293 G A DNAH8 Translation_Start_Site p.M1? 0.36 benign(0) TCGA-EE-A2GC-06 6 38749036 38749036 C T DNAH8 Missense_Mutation p.H499Y 0.35 benign(0.004) TCGA-EE-A2GC-06 6 38802367 38802367 G A DNAH8 Missense_Mutation p.V1222I 0.36 benign(0.077) TCGA-EE-A2GC-06 6 38843583 38843583 G A DNAH8 Missense_Mutation p.E2396K 0.42 probably_damaging(0.987) TCGA-EE-A2GC-06 6 38877410 38877410 C T DNAH8 Silent p.F2993F 0.42 TCGA-EE-A2GC-06 6 40360621 40360621 C T LRFN2 Silent p.V477V 0.19 TCGA-EE-A2GC-06 6 41652539 41652539 G A TFEB Missense_Mutation p.P410L 0.33 tolerated(0.3) possibly_damaging(0.783) TCGA-EE-A2GC-06 6 41653836 41653836 G A TFEB Missense_Mutation p.R315C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 6 41654725 41654725 G A TFEB Intron 0.38 TCGA-EE-A2GC-06 6 42643851 42643851 C T UBR2 Missense_Mutation p.L1437F 0.34 tolerated(0.73) benign(0.049) TCGA-EE-A2GC-06 6 43019452 43019452 C T CUL7 Silent p.E294E 0.36 TCGA-EE-A2GC-06 6 43024063 43024063 A C MRPL2 Missense_Mutation p.V129G 0.29 deleterious(0) probably_damaging(0.975) TCGA-EE-A2GC-06 6 43270098 43270098 G A SLC22A7 Missense_Mutation p.G408R 0.17 deleterious(0.05) probably_damaging(0.967) TCGA-EE-A2GC-06 6 43270099 43270099 G A SLC22A7 Missense_Mutation p.G408E 0.19 deleterious(0.05) benign(0.434) TCGA-EE-A2GC-06 6 43526285 43526285 G A XPO5 Missense_Mutation p.S422F 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 6 44141111 44141111 T C CAPN11 Silent p.G273G 0.41 TCGA-EE-A2GC-06 6 44269818 44269818 G A AARS2 Silent p.I859I 0.31 TCGA-EE-A2GC-06 6 46849835 46849835 C T GPR116 Missense_Mutation p.G208S 0.35 tolerated(0.63) benign(0.315) TCGA-EE-A2GC-06 6 47221138 47221138 C T TNFRSF21 Missense_Mutation p.D455N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GC-06 6 47649948 47649948 C T GPR111 Silent p.F551F 0.32 TCGA-EE-A2GC-06 6 47678598 47678598 C T GPR115 Silent p.S92S 0.09 TCGA-EE-A2GC-06 6 49754641 49754641 G A PGK2 Missense_Mutation p.S87F 0.35 tolerated(0.05) benign(0.013) TCGA-EE-A2GC-06 6 51934295 51934295 G A PKHD1 Silent p.I246I 0.38 TCGA-EE-A2GC-06 6 52656551 52656551 C T GSTA1 3'UTR 0.23 TCGA-EE-A2GC-06 6 54173634 54173634 C T TINAG Missense_Mutation p.P96S 0.36 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A2GC-06 6 54805506 54805506 G A FAM83B Silent p.E579E 0.35 TCGA-EE-A2GC-06 6 56495132 56495132 G A DST Missense_Mutation p.L861F 0.25 benign(0.16) TCGA-EE-A2GC-06 6 57512667 57512667 G A PRIM2 3'UTR 0.08 TCGA-EE-A2GC-06 6 62390859 62390859 G A KHDRBS2 3'UTR 0.30 TCGA-EE-A2GC-06 6 6266838 6266838 C T F13A1 Missense_Mutation p.R175Q 0.41 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A2GC-06 6 66044969 66044969 C T EYS Missense_Mutation p.R557K 0.40 tolerated(0.24) benign(0.017) TCGA-EE-A2GC-06 6 71185130 71185130 C T FAM135A Missense_Mutation p.P59S 0.38 tolerated(0.33) probably_damaging(0.999) TCGA-EE-A2GC-06 6 71236209 71236209 G A FAM135A Missense_Mutation p.G1141D 0.39 tolerated(0.35) possibly_damaging(0.594) TCGA-EE-A2GC-06 6 73787164 73787164 G A KCNQ5 Missense_Mutation p.D246N 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 6 73904753 73904753 G A KCNQ5 Silent p.R824R 0.36 TCGA-EE-A2GC-06 6 73951237 73951237 G A KHDC1 3'UTR 0.37 TCGA-EE-A2GC-06 6 73952230 73952230 C T KHDC1 Missense_Mutation p.G77E 0.37 tolerated(0.81) benign(0.083) TCGA-EE-A2GC-06 6 7558481 7558481 G A DSP Missense_Mutation p.D136N 0.32 benign(0.001) TCGA-EE-A2GC-06 6 75833061 75833061 G A COL12A1 Missense_Mutation p.P2311S 0.25 probably_damaging(0.998) TCGA-EE-A2GC-06 6 7586161 7586161 C T DSP 3'UTR 0.29 TCGA-EE-A2GC-06 6 7602873 7602873 C T SNRNP48 Missense_Mutation p.P205S 0.32 deleterious(0) possibly_damaging(0.623) TCGA-EE-A2GC-06 6 76660288 76660288 G A IMPG1 Silent p.F605F 0.28 TCGA-EE-A2GC-06 6 76660566 76660566 C T IMPG1 Missense_Mutation p.E513K 0.33 tolerated(0.05) benign(0.121) TCGA-EE-A2GC-06 6 76744366 76744366 G A IMPG1 Missense_Mutation p.S147F 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 6 79608082 79608082 C T IRAK1BP1 3'UTR 0.30 TCGA-EE-A2GC-06 6 83602685 83602685 G A UBE3D 3'UTR 0.45 TCGA-EE-A2GC-06 6 84117513 84117513 G A ME1 Silent p.F62F 0.40 TCGA-EE-A2GC-06 6 84270612 84270612 C T SNAP91 Missense_Mutation p.V833I 0.32 tolerated(0.12) possibly_damaging(0.891) TCGA-EE-A2GC-06 6 85472279 85472279 G A TBX18 Silent p.I160I 0.32 TCGA-EE-A2GC-06 6 88123562 88123562 C T C6ORF165 Missense_Mutation p.P76L 0.26 deleterious(0.01) benign(0.327) TCGA-EE-A2GC-06 6 90433234 90433234 G A MDN1 Silent p.N1925N 0.13 TCGA-EE-A2GC-06 6 90494817 90494817 G A MDN1 Nonsense_Mutation p.R455* 0.37 TCGA-EE-A2GC-06 6 90605545 90605545 G A GJA10 Missense_Mutation p.R453Q 0.35 tolerated(0.59) benign(0.007) TCGA-EE-A2GC-06 6 96651698 96651698 G A FUT9 Missense_Mutation p.G223R 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GC-06 6 99322293 99322293 G A FBXL4 Missense_Mutation p.S576F 0.32 deleterious(0.02) possibly_damaging(0.794) TCGA-EE-A2GC-06 6 99347336 99347336 G A FBXL4 Silent p.S375S 0.38 TCGA-EE-A2GC-06 7 100240777 100240777 G A ACTL6B 3'UTR 0.34 TCGA-EE-A2GC-06 7 100349900 100349900 C T ZAN Silent p.P724P 0.35 TCGA-EE-A2GC-06 7 100484522 100484522 C T SRRT Missense_Mutation p.P585L 0.37 tolerated(0.26) benign(0) TCGA-EE-A2GC-06 7 100675956 100675956 C T MUC17 Missense_Mutation p.S420F 0.40 benign(0.242) TCGA-EE-A2GC-06 7 100679768 100679768 C T MUC17 Missense_Mutation p.P1691S 0.36 probably_damaging(0.99) TCGA-EE-A2GC-06 7 100682344 100682344 T - MUC17 Frame_Shift_Del p.T2550Lfs*27 0.25 TCGA-EE-A2GC-06 7 100685708 100685708 C T MUC17 Nonsense_Mutation p.Q3671* 0.38 TCGA-EE-A2GC-06 7 100686443 100686443 C T MUC17 Missense_Mutation p.P3916S 0.38 benign(0) TCGA-EE-A2GC-06 7 102948111 102948111 G A PMPCB Missense_Mutation p.G269R 0.19 deleterious(0.03) possibly_damaging(0.616) TCGA-EE-A2GC-06 7 108524165 108524165 G A C7orf66 Missense_Mutation p.H83Y 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-EE-A2GC-06 7 115580967 115580967 G A TFEC Missense_Mutation p.R228C 0.29 deleterious(0) probably_damaging(0.956) TCGA-EE-A2GC-06 7 11630229 11630229 C T THSD7A Silent p.V437V 0.44 TCGA-EE-A2GC-06 7 116955221 116955221 C T WNT2 Silent p.G164G 0.40 TCGA-EE-A2GC-06 7 117003535 117003535 C T ASZ1 3'UTR 0.50 TCGA-EE-A2GC-06 7 117230474 117230474 G A CFTR Missense_Mutation p.E583K 0.33 tolerated(0.07) benign(0.297) TCGA-EE-A2GC-06 7 117246732 117246732 G A CFTR Silent p.G971G 0.33 TCGA-EE-A2GC-06 7 122811947 122811947 A G SLC13A1 Silent p.A80A 0.40 TCGA-EE-A2GC-06 7 124481086 124481086 T G POT1 Missense_Mutation p.H437P 0.29 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 7 128455871 128455871 G A CCDC136 Silent p.E1083E 0.53 TCGA-EE-A2GC-06 7 128475585 128475585 G A FLNC Silent p.Q186Q 0.32 TCGA-EE-A2GC-06 7 128480922 128480922 G A FLNC Missense_Mutation p.V571M 0.20 tolerated(0.31) benign(0.005) TCGA-EE-A2GC-06 7 128494134 128494134 G A FLNC Silent p.R2197R 0.26 TCGA-EE-A2GC-06 7 129066334 129066334 G A AHCYL2 Missense_Mutation p.E587K 0.35 tolerated(0.22) possibly_damaging(0.89) TCGA-EE-A2GC-06 7 129815422 129815422 G A TMEM209 Missense_Mutation p.S425L 0.41 deleterious(0.01) benign(0.043) TCGA-EE-A2GC-06 7 129856366 129856366 G A SSMEM1 3'UTR 0.34 TCGA-EE-A2GC-06 7 129909541 129909541 G A CPA2 Silent p.G62G 0.15 TCGA-EE-A2GC-06 7 130020289 130020289 C T CPA1 5'UTR 0.22 TCGA-EE-A2GC-06 7 130020290 130020290 C T CPA1 5'UTR 0.22 TCGA-EE-A2GC-06 7 130353656 130353656 C T TSGA13 3'UTR 0.57 TCGA-EE-A2GC-06 7 130370188 130370188 C T TSGA13 5'UTR 0.42 TCGA-EE-A2GC-06 7 131831317 131831317 C T PLXNA4 Silent p.G1669G 0.36 TCGA-EE-A2GC-06 7 131878935 131878935 G A PLXNA4 Silent p.I914I 0.34 TCGA-EE-A2GC-06 7 133981213 133981213 A G SLC35B4 Missense_Mutation p.Y227H 0.10 tolerated(0.17) benign(0.063) TCGA-EE-A2GC-06 7 134613622 134613622 C T CALD1 Silent p.T63T 0.39 TCGA-EE-A2GC-06 7 134632263 134632263 C T CALD1 Missense_Mutation p.P513S 0.50 tolerated(1) unknown(0) TCGA-EE-A2GC-06 7 134939945 134939945 G A STRA8 Missense_Mutation p.G296S 0.29 tolerated(0.59) benign(0.172) TCGA-EE-A2GC-06 7 135376974 135376974 C T SLC13A4 Intron 0.33 TCGA-EE-A2GC-06 7 136700040 136700040 T G CHRM2 Missense_Mutation p.M143R 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GC-06 7 137284650 137284650 C A DGKI Missense_Mutation p.G390V 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 137791374 137791374 C T AKR1D1 Silent p.F200F 0.27 TCGA-EE-A2GC-06 7 137792215 137792215 G A AKR1D1 Silent p.G248G 0.41 TCGA-EE-A2GC-06 7 138263977 138263977 C T TRIM24 Missense_Mutation p.S762F 0.31 tolerated(0.12) possibly_damaging(0.901) TCGA-EE-A2GC-06 7 138596028 138596028 G A KIAA1549 Silent p.S1003S 0.50 TCGA-EE-A2GC-06 7 138603167 138603167 G A KIAA1549 Missense_Mutation p.P402L 0.12 tolerated(0.65) benign(0.001) TCGA-EE-A2GC-06 7 140481411 140481411 C T BRAF Missense_Mutation p.G466E 0.33 deleterious(0) probably_damaging(0.911) TCGA-EE-A2GC-06 7 141618750 141618750 C T OR9A4 Silent p.I25I 0.29 TCGA-EE-A2GC-06 7 141635679 141635679 C T CLEC5A Missense_Mutation p.E94K 0.34 tolerated(1) benign(0.003) TCGA-EE-A2GC-06 7 141722220 141722220 G A MGAM Missense_Mutation p.R288K 0.08 deleterious(0.03) benign(0.246) TCGA-EE-A2GC-06 7 141740561 141740561 G A MGAM Missense_Mutation p.E805K 0.47 tolerated(0.37) benign(0.01) TCGA-EE-A2GC-06 7 141763330 141763330 G A MGAM Missense_Mutation p.G1430E 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 7 141794620 141794620 C T MGAM Missense_Mutation p.A1576V 0.30 deleterious(0) possibly_damaging(0.849) TCGA-EE-A2GC-06 7 141955085 141955085 C T PRSS58 Missense_Mutation p.E76K 0.33 deleterious(0) probably_damaging(0.915) TCGA-EE-A2GC-06 7 142021110 142021110 G A TRBV5-1 Silent p.L30L 0.38 TCGA-EE-A2GC-06 7 142099523 142099523 G A TRBV7-8 Silent p.V93V 0.32 TCGA-EE-A2GC-06 7 142119848 142119848 C T TRBV7-7 Missense_Mutation p.A107T 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 7 142119855 142119855 C T TRBV7-7 Silent p.R104R 0.30 TCGA-EE-A2GC-06 7 142622563 142622563 C T TRPV5 Intron 0.35 TCGA-EE-A2GC-06 7 142881021 142881021 C T TAS2R39 Silent p.F170F 0.32 TCGA-EE-A2GC-06 7 142991774 142991774 C T CASP2 Missense_Mutation p.R219C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 143018932 143018932 G A CLCN1 Silent p.V229V 0.43 TCGA-EE-A2GC-06 7 143042825 143042825 T G CLCN1 Missense_Mutation p.D714E 0.27 tolerated(0.41) benign(0.085) TCGA-EE-A2GC-06 7 143079436 143079436 G A ZYX Missense_Mutation p.E102K 0.51 tolerated(0.78) unknown(0) TCGA-EE-A2GC-06 7 143097141 143097141 G A EPHA1 Silent p.T146T 0.38 TCGA-EE-A2GC-06 7 143097142 143097142 G A EPHA1 Missense_Mutation p.T146I 0.36 deleterious(0) probably_damaging(0.975) TCGA-EE-A2GC-06 7 143104908 143104908 G A EPHA1 Intron 0.33 TCGA-EE-A2GC-06 7 143806807 143806807 C T OR2A2 Silent p.I44I 0.39 TCGA-EE-A2GC-06 7 143955995 143955995 G A OR2A7 Missense_Mutation p.H243Y 0.15 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GC-06 7 144097249 144097249 G A NOBOX Missense_Mutation p.T334I 0.31 tolerated_low_confidence(0.22) benign(0.001) TCGA-EE-A2GC-06 7 14613939 14613939 G A DGKB Silent p.I557I 0.33 TCGA-EE-A2GC-06 7 1484874 1484874 C T MICALL2 Missense_Mutation p.E278K 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A2GC-06 7 148524336 148524336 C T EZH2 Silent p.R216R 0.34 TCGA-EE-A2GC-06 7 148524337 148524337 C T EZH2 Missense_Mutation p.R216Q 0.34 tolerated(0.13) benign(0.3) TCGA-EE-A2GC-06 7 148801468 148801468 G A ZNF425 Missense_Mutation p.P499S 0.44 tolerated(1) benign(0.01) TCGA-EE-A2GC-06 7 150027988 150027988 G A ZBED6CL Silent p.R165R 0.46 TCGA-EE-A2GC-06 7 150174219 150174219 G A GIMAP8 Missense_Mutation p.G450E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 150269605 150269605 G A GIMAP4 Missense_Mutation p.M149I 0.38 deleterious(0.03) possibly_damaging(0.708) TCGA-EE-A2GC-06 7 150389963 150389963 G A GIMAP2 Missense_Mutation p.E197K 0.34 tolerated(0.09) possibly_damaging(0.807) TCGA-EE-A2GC-06 7 150390381 150390381 G A GIMAP2 Missense_Mutation p.R336K 0.30 tolerated_low_confidence(0.14) benign(0.099) TCGA-EE-A2GC-06 7 150417886 150417886 G A GIMAP1 Nonsense_Mutation p.W265* 0.31 TCGA-EE-A2GC-06 7 150439845 150439845 G A GIMAP5 Silent p.V206V 0.37 TCGA-EE-A2GC-06 7 150912052 150912052 G A ABCF2 Silent p.I549I 0.34 TCGA-EE-A2GC-06 7 151478485 151478485 G A PRKAG2 Silent p.S73S 0.35 TCGA-EE-A2GC-06 7 151668142 151668142 G A GALNTL5 Silent p.R120R 0.17 TCGA-EE-A2GC-06 7 151711745 151711745 G A GALNTL5 Missense_Mutation p.G348D 0.30 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GC-06 7 154667731 154667731 T C DPP6 Missense_Mutation p.F667L 0.42 tolerated(0.05) possibly_damaging(0.822) TCGA-EE-A2GC-06 7 156746923 156746923 C T NOM1 Silent p.A413A 0.37 TCGA-EE-A2GC-06 7 158536337 158536337 C T ESYT2 Silent p.G586G 0.37 TCGA-EE-A2GC-06 7 16734576 16734576 G A BZW2 Missense_Mutation p.E257K 0.44 tolerated(0.16) probably_damaging(0.971) TCGA-EE-A2GC-06 7 18688209 18688209 T G HDAC9 Missense_Mutation p.L457W 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 19184784 19184784 C T FERD3L Missense_Mutation p.E68K 0.51 tolerated(0.3) benign(0.129) TCGA-EE-A2GC-06 7 20445782 20445782 G A ITGB8 Missense_Mutation p.D671N 0.36 tolerated(0.14) benign(0.261) TCGA-EE-A2GC-06 7 20698762 20698762 C T ABCB5 Intron 0.37 TCGA-EE-A2GC-06 7 20721179 20721179 C T ABCB5 Nonsense_Mutation p.R587* 0.34 TCGA-EE-A2GC-06 7 20782640 20782640 G A ABCB5 Silent p.G1055G 0.31 TCGA-EE-A2GC-06 7 21678570 21678570 G A DNAH11 Missense_Mutation p.E1616K 0.31 benign(0.206) TCGA-EE-A2GC-06 7 21781645 21781645 C T DNAH11 Missense_Mutation p.A2679V 0.41 benign(0.062) TCGA-EE-A2GC-06 7 21827199 21827199 G A DNAH11 Missense_Mutation p.E3315K 0.16 possibly_damaging(0.575) TCGA-EE-A2GC-06 7 21847502 21847502 G A DNAH11 Silent p.K3396K 0.28 TCGA-EE-A2GC-06 7 21913052 21913052 A G DNAH11 Missense_Mutation p.K4050R 0.35 probably_damaging(0.997) TCGA-EE-A2GC-06 7 23164672 23164672 C T KLHL7 Missense_Mutation p.S108F 0.38 tolerated(0.07) benign(0.165) TCGA-EE-A2GC-06 7 23826183 23826183 C T STK31 Silent p.Y777Y 0.28 TCGA-EE-A2GC-06 7 23854802 23854802 G A STK31 Missense_Mutation p.G934R 0.32 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GC-06 7 24324907 24324907 G T NPY Silent p.L16L 0.32 TCGA-EE-A2GC-06 7 24703301 24703301 T A MPP6 Silent p.I248I 0.38 TCGA-EE-A2GC-06 7 25176401 25176401 G A C7orf31 Silent p.F321F 0.43 TCGA-EE-A2GC-06 7 27142044 27142044 G A HOXA2 Missense_Mutation p.P26S 0.15 tolerated(0.05) probably_damaging(1) TCGA-EE-A2GC-06 7 28858881 28858881 G A CREB5 Silent p.L504L 0.39 TCGA-EE-A2GC-06 7 2979559 2979559 C T CARD11 Missense_Mutation p.D230N 0.34 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2GC-06 7 30101626 30101626 C T PLEKHA8 Silent p.A404A 0.32 TCGA-EE-A2GC-06 7 31009443 31009443 G A GHRHR Intron 0.33 TCGA-EE-A2GC-06 7 31121356 31121356 C T ADCYAP1R1 Silent p.S105S 0.34 TCGA-EE-A2GC-06 7 31829764 31829764 G A PDE1C Intron 0.30 TCGA-EE-A2GC-06 7 32909368 32909368 G A KBTBD2 Silent p.L487L 0.38 TCGA-EE-A2GC-06 7 33102236 33102236 G T NT5C3A Missense_Mutation p.Q33K 0.44 tolerated(0.21) probably_damaging(0.977) TCGA-EE-A2GC-06 7 33102262 33102262 G A NT5C3A Missense_Mutation p.A24V 0.50 tolerated(0.96) possibly_damaging(0.483) TCGA-EE-A2GC-06 7 35293235 35293235 C T TBX20 5'UTR 0.38 TCGA-EE-A2GC-06 7 37355536 37355536 T A ELMO1 Missense_Mutation p.E36V 0.13 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GC-06 7 41739583 41739583 A G INHBA Splice_Site p.X130_splice 0.36 TCGA-EE-A2GC-06 7 42012223 42012223 G A GLI3 Missense_Mutation p.P606S 0.53 deleterious(0) benign(0.429) TCGA-EE-A2GC-06 7 43484300 43484300 G A HECW1 Missense_Mutation p.G510E 0.42 tolerated_low_confidence(0.72) benign(0.001) TCGA-EE-A2GC-06 7 43508616 43508616 G A HECW1 Missense_Mutation p.R1004Q 0.44 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A2GC-06 7 43580801 43580801 C T HECW1 Silent p.I1353I 0.31 TCGA-EE-A2GC-06 7 44268586 44268586 G A CAMK2B Intron 0.40 TCGA-EE-A2GC-06 7 44286758 44286758 G A CAMK2B Silent p.L125L 0.37 TCGA-EE-A2GC-06 7 44578576 44578576 G A NPC1L1 Missense_Mutation p.P474S 0.28 deleterious(0) probably_damaging(0.931) TCGA-EE-A2GC-06 7 44734097 44734097 C T OGDH Silent p.I530I 0.28 TCGA-EE-A2GC-06 7 45750231 45750231 G A ADCY1 Missense_Mutation p.G1013R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 45932710 45932710 C T IGFBP1 3'UTR 0.33 TCGA-EE-A2GC-06 7 47851488 47851488 G A PKD1L1 Missense_Mutation p.P2503L 0.20 tolerated(0.4) benign(0.078) TCGA-EE-A2GC-06 7 47880064 47880064 G A PKD1L1 Silent p.I1849I 0.21 TCGA-EE-A2GC-06 7 4815266 4815266 G A AP5Z1 5'UTR 0.43 TCGA-EE-A2GC-06 7 48528851 48528851 G A ABCA13 Missense_Mutation p.G4401S 0.35 benign(0.374) TCGA-EE-A2GC-06 7 53103675 53103675 G A POM121L12 Missense_Mutation p.G104E 0.45 tolerated(1) probably_damaging(0.988) TCGA-EE-A2GC-06 7 53103676 53103676 G A POM121L12 Silent p.G104G 0.45 TCGA-EE-A2GC-06 7 5338733 5338733 C T SLC29A4 Nonsense_Mutation p.Q333* 0.50 TCGA-EE-A2GC-06 7 5413788 5413788 G A TNRC18 Missense_Mutation p.P1043S 0.19 probably_damaging(0.998) TCGA-EE-A2GC-06 7 5540961 5540961 G A FBXL18 Silent p.F313F 0.30 TCGA-EE-A2GC-06 7 5545201 5545201 G T FBXL18 Missense_Mutation p.H27N 0.34 tolerated_low_confidence(0.55) benign(0.004) TCGA-EE-A2GC-06 7 55912396 55912396 C T SEPT14 Missense_Mutation p.G64E 0.24 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 7 56085030 56085030 G A PSPH Silent p.F106F 0.25 TCGA-EE-A2GC-06 7 5642949 5642949 C T FSCN1 Silent p.I298I 0.31 TCGA-EE-A2GC-06 7 57194383 57194383 C T ZNF479 Missense_Mutation p.E28K 0.35 tolerated(0.06) benign(0.012) TCGA-EE-A2GC-06 7 57194384 57194384 C T ZNF479 Silent p.L27L 0.36 TCGA-EE-A2GC-06 7 57200000 57200000 C T ZNF479 Missense_Mutation p.R11Q 0.31 tolerated_low_confidence(0.5) benign(0.273) TCGA-EE-A2GC-06 7 57522258 57522258 G A ZNF716 Silent p.V44V 0.26 TCGA-EE-A2GC-06 7 62751994 62751994 T A ZNF733P RNA 0.16 TCGA-EE-A2GC-06 7 63726906 63726906 G A ZNF679 Missense_Mutation p.E299K 0.38 tolerated(0.13) probably_damaging(0.997) TCGA-EE-A2GC-06 7 64168604 64168604 G A ZNF107 Missense_Mutation p.C641Y 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 64453116 64453116 C T ERV3-1 Missense_Mutation p.G97R 0.32 tolerated(0.32) benign(0.02) TCGA-EE-A2GC-06 7 66270291 66270291 C T KCTD7 Missense_Mutation p.P329S 0.38 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GC-06 7 66270292 66270292 C T KCTD7 Missense_Mutation p.P329L 0.37 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GC-06 7 66270311 66270311 C T KCTD7 Silent p.I335I 0.39 TCGA-EE-A2GC-06 7 6777062 6777062 C T PMS2CL RNA 0.29 TCGA-EE-A2GC-06 7 70597851 70597851 C T WBSCR17 Silent p.F21F 0.28 TCGA-EE-A2GC-06 7 72420526 72420526 G A POM121 3'UTR 0.14 TCGA-EE-A2GC-06 7 73097144 73097144 C T DNAJC30 Missense_Mutation p.E204K 0.28 tolerated(0.17) benign(0.2) TCGA-EE-A2GC-06 7 73932635 73932635 C T GTF2IRD1 Silent p.I228I 0.34 TCGA-EE-A2GC-06 7 7484055 7484055 C T COL28A1 Silent p.G525G 0.35 TCGA-EE-A2GC-06 7 75203179 75203179 G A HIP1 Missense_Mutation p.S211F 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 7 75933416 75933416 C T HSPB1 Missense_Mutation p.P182S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 7 81388081 81388081 C T HGF Nonsense_Mutation p.W98* 0.33 TCGA-EE-A2GC-06 7 81598213 81598213 A C CACNA2D1 Silent p.L795L 0.26 TCGA-EE-A2GC-06 7 819751 819751 C G HEATR2 Missense_Mutation p.P801A 0.38 deleterious(0.02) possibly_damaging(0.456) TCGA-EE-A2GC-06 7 82538248 82538248 C T PCLO Missense_Mutation p.R4461Q 0.41 unknown(0) TCGA-EE-A2GC-06 7 82545000 82545000 G A PCLO Missense_Mutation p.S4101F 0.50 unknown(0) TCGA-EE-A2GC-06 7 82545020 82545020 G A PCLO Silent p.F4094F 0.50 TCGA-EE-A2GC-06 7 82580135 82580135 A G PCLO Silent p.L3257L 0.30 TCGA-EE-A2GC-06 7 82785564 82785564 G A PCLO Silent p.S131S 0.31 TCGA-EE-A2GC-06 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.26 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A2GC-06 7 86415600 86415600 C T GRM3 Silent p.F164F 0.35 TCGA-EE-A2GC-06 7 86468884 86468884 C T GRM3 Missense_Mutation p.P685L 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GC-06 7 87069527 87069527 C T ABCB4 Missense_Mutation p.M516I 0.16 deleterious(0.02) benign(0.12) TCGA-EE-A2GC-06 7 87175289 87175289 G A ABCB1 Missense_Mutation p.R593C 0.35 deleterious(0.03) benign(0.13) TCGA-EE-A2GC-06 7 8791000 8791000 G A NXPH1 Silent p.G139G 0.44 TCGA-EE-A2GC-06 7 90003662 90003662 C T GTPBP10 Silent p.F195F 0.27 TCGA-EE-A2GC-06 7 91708885 91708885 C T AKAP9 Nonsense_Mutation p.Q2480* 0.33 TCGA-EE-A2GC-06 7 92844842 92844842 G A HEPACAM2 Missense_Mutation p.S196F 0.34 tolerated(0.3) possibly_damaging(0.873) TCGA-EE-A2GC-06 7 92923854 92923854 C T CCDC132 Intron 0.30 TCGA-EE-A2GC-06 7 93090156 93090156 C T CALCR Missense_Mutation p.G243R 0.27 tolerated(0.55) probably_damaging(1) TCGA-EE-A2GC-06 7 94293171 94293171 G A PEG10 Silent p.Q101Q 0.39 TCGA-EE-A2GC-06 7 94913329 94913329 G A PPP1R9A Splice_Site p.X1099_splice 0.30 TCGA-EE-A2GC-06 7 95442568 95442568 C T DYNC1I1 Missense_Mutation p.P95L 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GC-06 7 97814435 97814435 C T LMTK2 Silent p.F288F 0.32 TCGA-EE-A2GC-06 7 97822775 97822775 C T LMTK2 Silent p.L1000L 0.45 TCGA-EE-A2GC-06 7 98256641 98256641 C T NPTX2 Silent p.I351I 0.38 TCGA-EE-A2GC-06 7 98574287 98574311 CGCTGATGTTGGAGCACCAGGCTTT - TRRAP Frame_Shift_Del p.T2707Mfs*5 0.27 TCGA-EE-A2GC-06 7 99123980 99123980 C T ZKSCAN5 Silent p.F439F 0.41 TCGA-EE-A2GC-06 7 99129205 99129205 C T ZKSCAN5 Missense_Mutation p.S618F 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 7 99950486 99950486 C T PILRB 5'UTR 0.29 TCGA-EE-A2GC-06 8 100454726 100454726 G A VPS13B Nonsense_Mutation p.W1103* 0.36 TCGA-EE-A2GC-06 8 100847802 100847802 C T VPS13B Missense_Mutation p.P3285S 0.34 tolerated(0.12) possibly_damaging(0.641) TCGA-EE-A2GC-06 8 10159071 10159071 G T MSRA Missense_Mutation p.R120L 0.25 tolerated(0.61) probably_damaging(1) TCGA-EE-A2GC-06 8 102381730 102381730 G A NACAP1 RNA 0.17 TCGA-EE-A2GC-06 8 103354800 103354800 A G UBR5 Silent p.G333G 0.28 TCGA-EE-A2GC-06 8 10387074 10387074 G A PRSS55 Missense_Mutation p.G71E 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 8 104388226 104388226 G A CTHRC1 Intron 0.27 TCGA-EE-A2GC-06 8 10469043 10469043 G A RP1L1 Silent p.T855T 0.48 TCGA-EE-A2GC-06 8 10469741 10469741 C T RP1L1 Missense_Mutation p.G623R 0.43 benign(0.413) TCGA-EE-A2GC-06 8 10470276 10470276 C T RP1L1 Silent p.G444G 0.23 TCGA-EE-A2GC-06 8 104943551 104943551 G A RIMS2 Missense_Mutation p.D769N 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.732) TCGA-EE-A2GC-06 8 105456519 105456519 C T DPYS Missense_Mutation p.M250I 0.30 deleterious(0.01) possibly_damaging(0.525) TCGA-EE-A2GC-06 8 105459710 105459710 G A DPYS Missense_Mutation p.L149F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 105511596 105511596 G A LRP12 Missense_Mutation p.H142Y 0.32 tolerated(0.12) probably_damaging(0.984) TCGA-EE-A2GC-06 8 106646513 106646513 C T ZFPM2 Missense_Mutation p.P154S 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GC-06 8 106815257 106815257 C T ZFPM2 Missense_Mutation p.P983S 0.47 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GC-06 8 106815487 106815487 G A ZFPM2 Silent p.Q1059Q 0.24 TCGA-EE-A2GC-06 8 10755867 10755867 G A XKR6 Silent p.I507I 0.42 TCGA-EE-A2GC-06 8 110465061 110465061 C T PKHD1L1 Silent p.L2208L 0.44 TCGA-EE-A2GC-06 8 110468544 110468544 G A PKHD1L1 Missense_Mutation p.E2310K 0.33 tolerated(0.1) benign(0.066) TCGA-EE-A2GC-06 8 110477426 110477426 C T PKHD1L1 Missense_Mutation p.R2789C 0.40 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GC-06 8 110487398 110487398 G A PKHD1L1 Nonsense_Mutation p.W2886* 0.30 TCGA-EE-A2GC-06 8 113347561 113347561 G A CSMD3 Missense_Mutation p.H2388Y 0.28 tolerated(0.39) benign(0.023) TCGA-EE-A2GC-06 8 113960050 113960050 C T CSMD3 Missense_Mutation p.E493K 0.28 tolerated(0.06) possibly_damaging(0.696) TCGA-EE-A2GC-06 8 117874126 117874126 A G RAD21 Silent p.L110L 0.31 TCGA-EE-A2GC-06 8 120886002 120886002 G A DEPTOR 5'UTR 0.28 TCGA-EE-A2GC-06 8 121019092 121019092 C T DEPTOR Missense_Mutation p.P325L 0.35 deleterious(0) possibly_damaging(0.893) TCGA-EE-A2GC-06 8 124525620 124525620 G T FBXO32 Missense_Mutation p.L157I 0.10 tolerated(0.1) possibly_damaging(0.798) TCGA-EE-A2GC-06 8 125551344 125551344 C T TATDN1 5'Flank 0.38 TCGA-EE-A2GC-06 8 12968281 12968281 A - DLC1 Frame_Shift_Del p.L491Wfs*13 0.28 TCGA-EE-A2GC-06 8 131916183 131916183 G A ADCY8 Silent p.I582I 0.28 TCGA-EE-A2GC-06 8 133141431 133141431 G A KCNQ3 3'UTR 0.25 TCGA-EE-A2GC-06 8 133150230 133150230 G A KCNQ3 Silent p.F534F 0.46 TCGA-EE-A2GC-06 8 133152399 133152399 C T KCNQ3 Missense_Mutation p.E498K 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GC-06 8 134042139 134042139 C T TG Silent p.I2370I 0.17 TCGA-EE-A2GC-06 8 136594241 136594241 C T KHDRBS3 Silent p.P244P 0.11 TCGA-EE-A2GC-06 8 139164194 139164194 G A FAM135B Missense_Mutation p.P842S 0.28 tolerated_low_confidence(0.11) benign(0.164) TCGA-EE-A2GC-06 8 139164304 139164304 C T FAM135B Missense_Mutation p.S805N 0.21 tolerated(0.11) benign(0.007) TCGA-EE-A2GC-06 8 139255192 139255192 G A FAM135B Missense_Mutation p.S221F 0.26 tolerated(0.1) benign(0.021) TCGA-EE-A2GC-06 8 139380195 139380195 G A FAM135B Missense_Mutation p.S11L 0.31 deleterious(0) benign(0.075) TCGA-EE-A2GC-06 8 142444090 142444090 G A PTP4A3 3'Flank 0.19 TCGA-EE-A2GC-06 8 143562968 143562968 G A BAI1 Missense_Mutation p.G676R 0.38 tolerated(0.81) probably_damaging(0.989) TCGA-EE-A2GC-06 8 143956467 143956467 C A CYP11B1 Missense_Mutation p.G435V 0.52 tolerated(0.16) possibly_damaging(0.559) TCGA-EE-A2GC-06 8 143956468 143956468 C T CYP11B1 Missense_Mutation p.G435S 0.51 tolerated(0.86) benign(0.029) TCGA-EE-A2GC-06 8 144812352 144812352 G A FAM83H Missense_Mutation p.P134L 0.46 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A2GC-06 8 145726099 145726099 G A PPP1R16A Missense_Mutation p.G288R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 145726100 145726100 G A PPP1R16A Missense_Mutation p.G288E 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 145741611 145741611 G A RECQL4 Missense_Mutation p.P298S 0.33 tolerated(0.58) benign(0.003) TCGA-EE-A2GC-06 8 145781006 145781006 G A ARHGAP39 Silent p.F178F 0.27 TCGA-EE-A2GC-06 8 145948764 145948764 G T ZNF251 Missense_Mutation p.S94Y 0.22 tolerated(1) possibly_damaging(0.608) TCGA-EE-A2GC-06 8 1513858 1513858 G A DLGAP2 Missense_Mutation p.D334N 0.73 deleterious(0.01) possibly_damaging(0.694) TCGA-EE-A2GC-06 8 16026357 16026357 C T MSR1 Silent p.T80T 0.32 TCGA-EE-A2GC-06 8 1616562 1616562 G A DLGAP2 Silent p.L546L 0.31 TCGA-EE-A2GC-06 8 17400855 17400855 C T SLC7A2 Missense_Mutation p.P43S 0.43 tolerated(0.16) benign(0.086) TCGA-EE-A2GC-06 8 2017449 2017449 G A MYOM2 Missense_Mutation p.G236R 0.45 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GC-06 8 21766993 21766993 G A DOK2 Silent p.L356L 0.30 TCGA-EE-A2GC-06 8 21937924 21937924 T C DMTN Missense_Mutation p.L301P 0.30 deleterious(0.05) probably_damaging(0.982) TCGA-EE-A2GC-06 8 21978678 21978678 G A HR Missense_Mutation p.P756L 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2GC-06 8 22442633 22442633 C T PDLIM2 Missense_Mutation p.P390L 0.25 deleterious(0.02) benign(0.033) TCGA-EE-A2GC-06 8 23069692 23069692 G A TNFRSF10A Missense_Mutation p.H114Y 0.13 tolerated(0.26) benign(0.406) TCGA-EE-A2GC-06 8 23428980 23428980 C T SLC25A37 Missense_Mutation p.P210L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 24187570 24187570 C T ADAM28 Missense_Mutation p.H349Y 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 24196978 24196978 G A ADAM28 Splice_Site p.X523_splice 0.35 TCGA-EE-A2GC-06 8 24256527 24256527 G A ADAMDEC1 Silent p.K301K 0.24 TCGA-EE-A2GC-06 8 24773142 24773142 G A NEFM Missense_Mutation p.E369K 0.30 deleterious(0) unknown(0) TCGA-EE-A2GC-06 8 25156535 25156535 T C DOCK5 Missense_Mutation p.F228L 0.16 tolerated(0.82) benign(0.001) TCGA-EE-A2GC-06 8 25156545 25156545 T C DOCK5 Missense_Mutation p.F231S 0.17 deleterious(0) possibly_damaging(0.856) TCGA-EE-A2GC-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.35 deleterious(0.01) benign(0.01) TCGA-EE-A2GC-06 8 25745471 25745471 C T EBF2 Missense_Mutation p.A257T 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GC-06 8 27319183 27319183 C T CHRNA2 Missense_Mutation p.G518D 0.33 deleterious(0.01) possibly_damaging(0.558) TCGA-EE-A2GC-06 8 27534162 27534162 G A SCARA3 3'Flank 0.47 TCGA-EE-A2GC-06 8 27634107 27634107 C T ESCO2 Silent p.L94L 0.42 TCGA-EE-A2GC-06 8 2830813 2830813 G A CSMD1 Missense_Mutation p.P2917S 0.35 benign(0.053) TCGA-EE-A2GC-06 8 2876151 2876151 G A CSMD1 Missense_Mutation p.S2626F 0.34 possibly_damaging(0.718) TCGA-EE-A2GC-06 8 2910139 2910139 C T CSMD1 Missense_Mutation p.G2502E 0.41 probably_damaging(0.972) TCGA-EE-A2GC-06 8 3063131 3063131 C T CSMD1 Missense_Mutation p.G1627S 0.57 probably_damaging(1) TCGA-EE-A2GC-06 8 30700975 30700975 G A TEX15 Silent p.D1853D 0.38 TCGA-EE-A2GC-06 8 31024698 31024698 C T WRN Silent p.I1381I 0.40 TCGA-EE-A2GC-06 8 31498200 31498200 C T NRG1 Missense_Mutation p.R87W 0.52 deleterious(0) benign(0.334) TCGA-EE-A2GC-06 8 32621281 32621281 G A NRG1 Missense_Mutation p.M433I 0.38 deleterious(0.01) possibly_damaging(0.644) TCGA-EE-A2GC-06 8 35648049 35648049 G A UNC5D Missense_Mutation p.D944N 0.12 tolerated_low_confidence(0.1) benign(0.012) TCGA-EE-A2GC-06 8 36793484 36793484 C T KCNU1 3'UTR 0.41 TCGA-EE-A2GC-06 8 37702243 37702243 G A BRF2 Missense_Mutation p.S342F 0.37 deleterious(0.03) benign(0.187) TCGA-EE-A2GC-06 8 38839222 38839222 C T HTRA4 Silent p.S350S 0.28 TCGA-EE-A2GC-06 8 39142383 39142383 C T ADAM32 3'UTR 0.58 TCGA-EE-A2GC-06 8 39506020 39506020 G A ADAM18 Missense_Mutation p.E402K 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 39792675 39792675 G A IDO2 5'UTR 0.43 TCGA-EE-A2GC-06 8 42174335 42174335 C T IKBKB Silent p.I346I 0.34 TCGA-EE-A2GC-06 8 42614235 42614235 C T CHRNA6 Missense_Mutation p.E81K 0.36 deleterious(0.04) probably_damaging(0.957) TCGA-EE-A2GC-06 8 42837793 42837793 G A HOOK3 Missense_Mutation p.E449K 0.40 tolerated(0.61) benign(0.197) TCGA-EE-A2GC-06 8 48746891 48746891 G A PRKDC Missense_Mutation p.P2672L 0.36 benign(0.005) TCGA-EE-A2GC-06 8 48809737 48809737 G A PRKDC Silent p.F1194F 0.33 TCGA-EE-A2GC-06 8 51449358 51449358 G T SNTG1 Missense_Mutation p.D224Y 0.35 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GC-06 8 51617288 51617288 C T SNTG1 Silent p.T389T 0.42 TCGA-EE-A2GC-06 8 52359682 52359682 G A PXDNL Silent p.S469S 0.37 TCGA-EE-A2GC-06 8 53062531 53062531 C T ST18 Missense_Mutation p.E605K 0.26 tolerated(0.1) benign(0.407) TCGA-EE-A2GC-06 8 53071457 53071457 C T ST18 Splice_Site p.X602_splice 0.40 TCGA-EE-A2GC-06 8 53076606 53076606 G A ST18 Missense_Mutation p.S447F 0.38 deleterious(0) possibly_damaging(0.853) TCGA-EE-A2GC-06 8 53555124 53555124 C T RB1CC1 Missense_Mutation p.R1375Q 0.36 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A2GC-06 8 54147566 54147566 C T OPRK1 Missense_Mutation p.M121I 0.33 tolerated(0.08) benign(0.338) TCGA-EE-A2GC-06 8 54628550 54628550 G C ATP6V1H Missense_Mutation p.P476A 0.38 tolerated(0.42) benign(0.001) TCGA-EE-A2GC-06 8 55533846 55533846 C T RP1 Missense_Mutation p.S107F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 55538364 55538364 G A RP1 Missense_Mutation p.R641K 0.44 tolerated(0.08) benign(0.01) TCGA-EE-A2GC-06 8 55538781 55538781 G A RP1 Missense_Mutation p.R780K 0.24 tolerated(0.25) benign(0.013) TCGA-EE-A2GC-06 8 55541555 55541555 G A RP1 Missense_Mutation p.D1705N 0.40 tolerated(0.15) benign(0.006) TCGA-EE-A2GC-06 8 55542352 55542352 G A RP1 Silent p.E1970E 0.47 TCGA-EE-A2GC-06 8 57228854 57228854 G A SDR16C5 Missense_Mutation p.S18L 0.27 tolerated(0.74) benign(0.002) TCGA-EE-A2GC-06 8 57353773 57353773 C T PENK 3'UTR 0.37 TCGA-EE-A2GC-06 8 62212398 62212398 C T CLVS1 Silent p.V4V 0.30 TCGA-EE-A2GC-06 8 623858 623858 A T ERICH1 Missense_Mutation p.L165Q 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GC-06 8 65509133 65509133 G A CYP7B1 3'UTR 0.44 TCGA-EE-A2GC-06 8 66516710 66516710 G A ARMC1 Silent p.S256S 0.33 TCGA-EE-A2GC-06 8 66989064 66989064 G A DNAJC5B Missense_Mutation p.E97K 0.29 deleterious(0.02) possibly_damaging(0.67) TCGA-EE-A2GC-06 8 67012294 67012294 C T DNAJC5B 3'UTR 0.26 TCGA-EE-A2GC-06 8 67592026 67592026 C T C8orf44 Missense_Mutation p.S106F 0.41 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A2GC-06 8 6783482 6783482 C T DEFA6 Missense_Mutation p.D26N 0.31 tolerated(0.15) benign(0.296) TCGA-EE-A2GC-06 8 68346349 68346349 G A CPA6 Missense_Mutation p.S322F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 68396080 68396080 C T CPA6 Missense_Mutation p.R254K 0.24 deleterious(0.01) possibly_damaging(0.745) TCGA-EE-A2GC-06 8 69552661 69552661 G T C8orf34 Missense_Mutation p.G386W 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 8 70585187 70585187 G A SLCO5A1 Missense_Mutation p.P822S 0.40 deleterious_low_confidence(0.03) benign(0.024) TCGA-EE-A2GC-06 8 71039106 71039106 C T NCOA2 Missense_Mutation p.M1286I 0.32 tolerated(0.51) benign(0.001) TCGA-EE-A2GC-06 8 73480393 73480393 C T KCNB2 Missense_Mutation p.H142Y 0.16 tolerated(0.09) benign(0.342) TCGA-EE-A2GC-06 8 74005100 74005100 C T SBSPON Missense_Mutation p.R68K 0.35 tolerated(0.12) benign(0.009) TCGA-EE-A2GC-06 8 77763421 77763421 C T ZFHX4 Missense_Mutation p.R1422W 0.35 possibly_damaging(0.835) TCGA-EE-A2GC-06 8 77764324 77764324 C T ZFHX4 Missense_Mutation p.P1723S 0.26 possibly_damaging(0.803) TCGA-EE-A2GC-06 8 77766990 77766990 G A ZFHX4 Silent p.T2611T 0.39 TCGA-EE-A2GC-06 8 81605253 81605253 G A ZNF704 Missense_Mutation p.P104L 0.28 deleterious(0.02) possibly_damaging(0.888) TCGA-EE-A2GC-06 8 87229699 87229699 C T SLC7A13 Silent p.K393K 0.37 TCGA-EE-A2GC-06 8 87241867 87241867 C T SLC7A13 Missense_Mutation p.G214R 0.46 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GC-06 8 92378858 92378858 C T SLC26A7 Silent p.F513F 0.24 TCGA-EE-A2GC-06 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.26 deleterious(0.03) benign(0.185) TCGA-EE-A2GC-06 8 94828614 94828614 C T TMEM67 Silent p.I974I 0.39 TCGA-EE-A2GC-06 8 9563713 9563713 C T TNKS Missense_Mutation p.H407Y 0.36 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2GC-06 8 96166839 96166839 G A PLEKHF2 Silent p.K189K 0.40 TCGA-EE-A2GC-06 8 98288900 98288900 T A TSPYL5 Missense_Mutation p.K391N 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.811) TCGA-EE-A2GC-06 8 99101565 99101565 G A C8orf47 Missense_Mutation p.G107E 0.34 tolerated(0.1) benign(0.233) TCGA-EE-A2GC-06 8 99142337 99142337 C T POP1 Silent p.I206I 0.26 TCGA-EE-A2GC-06 9 100245160 100245160 C T TDRD7 Silent p.I814I 0.53 TCGA-EE-A2GC-06 9 100286524 100286524 C T TMOD1 Silent p.I18I 0.59 TCGA-EE-A2GC-06 9 100971310 100971310 G A TBC1D2 Missense_Mutation p.A597V 0.64 tolerated(0.65) benign(0.051) TCGA-EE-A2GC-06 9 101056148 101056148 T A GABBR2 Missense_Mutation p.Q860L 0.61 tolerated_low_confidence(1) benign(0.016) TCGA-EE-A2GC-06 9 101542503 101542503 G A ANKS6 Missense_Mutation p.P446S 0.53 tolerated(0.1) benign(0.186) TCGA-EE-A2GC-06 9 104432604 104432604 C T GRIN3A Nonsense_Mutation p.W697* 0.58 TCGA-EE-A2GC-06 9 105763885 105763885 G A CYLC2 Missense_Mutation p.D15N 0.65 deleterious(0.02) possibly_damaging(0.902) TCGA-EE-A2GC-06 9 107331556 107331556 G A OR13C8 Silent p.L36L 0.59 TCGA-EE-A2GC-06 9 109691428 109691428 C T ZNF462 Silent p.I1745I 0.52 TCGA-EE-A2GC-06 9 111618190 111618190 G A ACTL7B Silent p.P7P 0.41 TCGA-EE-A2GC-06 9 114304716 114304716 G A ZNF483 Missense_Mutation p.G501R 0.66 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GC-06 9 116022780 116022780 C T SLC31A1 3'UTR 0.46 TCGA-EE-A2GC-06 9 116037978 116037978 G C PRPF4 5'UTR 0.62 TCGA-EE-A2GC-06 9 116154442 116154442 G A ALAD Missense_Mutation p.P41S 0.52 tolerated(0.07) benign(0.044) TCGA-EE-A2GC-06 9 118974146 118974146 G A PAPPA Missense_Mutation p.G618E 0.58 tolerated(0.98) probably_damaging(0.982) TCGA-EE-A2GC-06 9 120475597 120475597 G A TLR4 Silent p.G397G 0.72 TCGA-EE-A2GC-06 9 123216083 123216083 G A CDK5RAP2 Missense_Mutation p.S815F 0.63 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GC-06 9 125273983 125273983 T G OR1J2 Silent p.L301L 0.53 TCGA-EE-A2GC-06 9 125932298 125932298 C T STRBP Missense_Mutation p.E140K 0.71 tolerated(0.85) benign(0.124) TCGA-EE-A2GC-06 9 126132723 126132723 G A CRB2 Missense_Mutation p.R464K 0.39 deleterious(0.01) benign(0.067) TCGA-EE-A2GC-06 9 126144301 126144301 G A DENND1A Nonsense_Mutation p.Q814* 0.77 TCGA-EE-A2GC-06 9 127650642 127650642 G A GOLGA1 Nonsense_Mutation p.Q599* 0.60 TCGA-EE-A2GC-06 9 130269305 130269305 G C FAM129B Missense_Mutation p.A687G 0.82 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2GC-06 9 130486511 130486511 C T TTC16 Nonsense_Mutation p.Q329* 0.56 TCGA-EE-A2GC-06 9 130716159 130716192 GGTGAACCTCTTTCGCCACCGCACACAGTTCTCC AGA FAM102A Frame_Shift_Del p.Q53Hfs*7 0.37 TCGA-EE-A2GC-06 9 131857852 131857852 C T CRAT Missense_Mutation p.V569M 0.16 tolerated(0.18) benign(0.12) TCGA-EE-A2GC-06 9 133333934 133333934 G A ASS1 Silent p.Q107Q 0.42 TCGA-EE-A2GC-06 9 133346888 133346888 C T ASS1 Silent p.L195L 0.62 TCGA-EE-A2GC-06 9 134350747 134350747 T G PRRC2B Silent p.R1077R 0.65 TCGA-EE-A2GC-06 9 135458257 135458257 G A BARHL1 Missense_Mutation p.G25R 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GC-06 9 136409658 136409658 C T ADAMTSL2 Missense_Mutation p.S250F 0.42 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GC-06 9 136501715 136501715 C T DBH Silent p.F74F 0.59 TCGA-EE-A2GC-06 9 136561368 136561368 G A SARDH Missense_Mutation p.S595F 0.45 deleterious(0) possibly_damaging(0.812) TCGA-EE-A2GC-06 9 136901263 136901263 G A BRD3 Silent p.S609S 0.63 TCGA-EE-A2GC-06 9 137717665 137717665 G A COL5A1 Missense_Mutation p.G1661E 0.71 unknown(0) TCGA-EE-A2GC-06 9 138675892 138675892 A G KCNT1 Missense_Mutation p.N955S 0.56 tolerated(0.1) benign(0.081) TCGA-EE-A2GC-06 9 140040184 140040184 C T GRIN1 Missense_Mutation p.H134Y 0.48 tolerated(0.12) probably_damaging(0.962) TCGA-EE-A2GC-06 9 140146524 140146524 C T C9orf173 Missense_Mutation p.P114S 0.43 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A2GC-06 9 140450068 140450068 G A DPH7 Missense_Mutation p.H328Y 0.58 tolerated(1) benign(0.001) TCGA-EE-A2GC-06 9 140708908 140708908 C G EHMT1 Missense_Mutation p.S1069C 0.56 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GC-06 9 18639275 18639275 G A ADAMTSL1 Missense_Mutation p.G234R 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.55 TCGA-EE-A2GC-06 9 21974680 21974680 G T CDKN2A Silent p.I49I 0.56 TCGA-EE-A2GC-06 9 32634687 32634687 C T TAF1L Silent p.V297V 0.43 TCGA-EE-A2GC-06 9 35792846 35792846 C T NPR2 Silent p.P147P 0.71 TCGA-EE-A2GC-06 9 37126579 37126579 C T ZCCHC7 Nonsense_Mutation p.Q84* 0.47 TCGA-EE-A2GC-06 9 37537249 37537249 G A FBXO10 Missense_Mutation p.S426F 0.29 deleterious(0) probably_damaging(0.941) TCGA-EE-A2GC-06 9 38396091 38396091 C T ALDH1B1 Nonsense_Mutation p.R116* 0.23 TCGA-EE-A2GC-06 9 40702812 40702812 C T SPATA31A3 Missense_Mutation p.P157S 0.28 tolerated(0.08) probably_damaging(0.932) TCGA-EE-A2GC-06 9 5164204 5164204 C T INSL6 Silent p.K117K 0.45 TCGA-EE-A2GC-06 9 5300348 5300348 G A RLN2 Missense_Mutation p.S103F 0.52 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 9 6328535 6328535 C T TPD52L3 5'UTR 0.65 TCGA-EE-A2GC-06 9 71549866 71549866 C T PIP5K1B Missense_Mutation p.S421L 0.47 tolerated(0.06) benign(0.426) TCGA-EE-A2GC-06 9 79865028 79865028 C T VPS13A Missense_Mutation p.R685C 0.58 deleterious(0.04) possibly_damaging(0.886) TCGA-EE-A2GC-06 9 79959077 79959077 C T VPS13A Silent p.P2345P 0.45 TCGA-EE-A2GC-06 9 8389246 8389246 C T PTPRD Missense_Mutation p.E1458K 0.62 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2GC-06 9 8485270 8485270 G A PTPRD Missense_Mutation p.S1037F 0.60 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GC-06 9 8499706 8499706 C T PTPRD Missense_Mutation p.E755K 0.49 tolerated(0.12) probably_damaging(0.987) TCGA-EE-A2GC-06 9 90321520 90321520 C T DAPK1 Silent p.N1178N 0.67 TCGA-EE-A2GC-06 9 93375886 93375886 G A DIRAS2 Missense_Mutation p.S75F 0.49 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2GC-06 9 98218603 98218603 G A PTCH1 Silent p.I1087I 0.43 TCGA-EE-A2GC-06 9 99064372 99064372 C T HSD17B3 Silent p.L5L 0.76 TCGA-EE-A2GC-06 X 101152859 101152859 C T ZMAT1 Missense_Mutation p.G163R 0.69 tolerated(0.14) benign(0.037) TCGA-EE-A2GC-06 X 101581478 101581478 C T NXF2 3'UTR 0.31 TCGA-EE-A2GC-06 X 103359106 103359106 C T ZCCHC18 Nonsense_Mutation p.Q102* 0.64 TCGA-EE-A2GC-06 X 104999228 104999228 A T IL1RAPL2 Missense_Mutation p.D417V 0.68 tolerated_low_confidence(0.05) possibly_damaging(0.83) TCGA-EE-A2GC-06 X 104999229 104999229 C T IL1RAPL2 Silent p.D417D 0.68 TCGA-EE-A2GC-06 X 110390987 110390987 G A PAK3 Missense_Mutation p.R136Q 0.75 tolerated(0.17) possibly_damaging(0.511) TCGA-EE-A2GC-06 X 114082605 114082605 G A HTR2C Nonsense_Mutation p.W130* 0.68 TCGA-EE-A2GC-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.69 TCGA-EE-A2GC-06 X 114864164 114864164 T A PLS3 Missense_Mutation p.F129I 0.70 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A2GC-06 X 117043777 117043777 G A KLHL13 Missense_Mutation p.P288S 0.73 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GC-06 X 117044002 117044002 C T KLHL13 Missense_Mutation p.E213K 0.72 tolerated(0.38) benign(0.038) TCGA-EE-A2GC-06 X 119070702 119070702 G A NKAP Intron 0.74 TCGA-EE-A2GC-06 X 122459933 122459933 A T GRIA3 Missense_Mutation p.T189S 0.42 tolerated(0.53) benign(0.035) TCGA-EE-A2GC-06 X 122459934 122459934 C T GRIA3 Missense_Mutation p.T189I 0.41 tolerated(0.07) probably_damaging(0.977) TCGA-EE-A2GC-06 X 123514370 123514370 G A TENM1 3'UTR 0.79 TCGA-EE-A2GC-06 X 123654622 123654622 C T TENM1 Missense_Mutation p.E1016K 0.67 deleterious(0.01) possibly_damaging(0.474) TCGA-EE-A2GC-06 X 124097411 124097411 C T TENM1 Silent p.R64R 0.64 TCGA-EE-A2GC-06 X 130218372 130218372 G A ARHGAP36 Missense_Mutation p.E247K 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 X 131220009 131220009 G A FRMD7 Missense_Mutation p.R146W 0.74 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GC-06 X 1321287 1321287 G A CRLF2 Silent p.F156F 0.42 TCGA-EE-A2GC-06 X 132161263 132161263 G A USP26 Missense_Mutation p.P329L 0.62 tolerated(0.12) possibly_damaging(0.722) TCGA-EE-A2GC-06 X 134711293 134711293 C T DDX26B Missense_Mutation p.P650L 0.81 tolerated(0.28) benign(0.001) TCGA-EE-A2GC-06 X 135302927 135302927 G A MAP7D3 Missense_Mutation p.S828L 0.73 tolerated(0.08) benign(0.149) TCGA-EE-A2GC-06 X 135570517 135570517 C T BRS3 Missense_Mutation p.P82S 0.72 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 X 1401667 1401667 A T CSF2RA Missense_Mutation p.K24I 0.30 tolerated(0.14) benign(0.209) TCGA-EE-A2GC-06 X 141290665 141290665 G A MAGEC2 Missense_Mutation p.S370F 0.76 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GC-06 X 141290826 141290826 C T MAGEC2 Silent p.E316E 0.66 TCGA-EE-A2GC-06 X 141291347 141291347 C T MAGEC2 Missense_Mutation p.E143K 0.37 tolerated(0.51) benign(0.085) TCGA-EE-A2GC-06 X 142718600 142718600 A T SLITRK4 Missense_Mutation p.L109I 0.81 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GC-06 X 1428398 1428398 G A CSF2RA 3'UTR 0.28 TCGA-EE-A2GC-06 X 14627222 14627222 C T GLRA2 Silent p.S275S 0.72 TCGA-EE-A2GC-06 X 150832597 150832597 C T PASD1 Missense_Mutation p.S283F 0.78 tolerated(0.06) benign(0.074) TCGA-EE-A2GC-06 X 151900216 151900216 G A MAGEA12 Silent p.I195I 0.38 TCGA-EE-A2GC-06 X 153633216 153633216 G A DNASE1L1 Silent p.P88P 0.71 TCGA-EE-A2GC-06 X 18259476 18259476 G A SCML2 Silent p.F666F 0.80 TCGA-EE-A2GC-06 X 2138962 2138962 G A DHRSX 3'UTR 0.33 TCGA-EE-A2GC-06 X 23412060 23412060 C T PTCHD1 Silent p.L809L 0.80 TCGA-EE-A2GC-06 X 24086119 24086119 C T EIF2S3 Silent p.S302S 0.70 TCGA-EE-A2GC-06 X 24228474 24228474 A T ZFX Nonsense_Mutation p.K467* 0.86 TCGA-EE-A2GC-06 X 27766905 27766905 C T DCAF8L2 Silent p.S631S 0.89 TCGA-EE-A2GC-06 X 27999513 27999513 G A DCAF8L1 5'UTR 0.85 TCGA-EE-A2GC-06 X 29973843 29973843 C T IL1RAPL1 Missense_Mutation p.S666L 0.82 tolerated_low_confidence(0.11) benign(0.015) TCGA-EE-A2GC-06 X 30237582 30237582 A T MAGEB2 Silent p.V295V 0.68 TCGA-EE-A2GC-06 X 30269741 30269741 C T MAGEB1 3'UTR 0.85 TCGA-EE-A2GC-06 X 3227926 3227926 G A MXRA5 Missense_Mutation p.S2773L 0.62 tolerated(0.05) benign(0.031) TCGA-EE-A2GC-06 X 3228224 3228224 G A MXRA5 Missense_Mutation p.P2674S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 X 3229630 3229630 G A MXRA5 Missense_Mutation p.T2205I 0.82 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GC-06 X 34961230 34961230 G A FAM47B Silent p.K94K 0.79 TCGA-EE-A2GC-06 X 35820652 35820652 C T MAGEB16 Silent p.L113L 0.59 TCGA-EE-A2GC-06 X 35820755 35820755 G A MAGEB16 Missense_Mutation p.E148K 0.79 tolerated(1) possibly_damaging(0.529) TCGA-EE-A2GC-06 X 37027798 37027798 C T FAM47C Missense_Mutation p.R439C 0.72 tolerated(0.19) benign(0.004) TCGA-EE-A2GC-06 X 37642818 37642818 C T CYBB Nonsense_Mutation p.R73* 0.77 TCGA-EE-A2GC-06 X 40518793 40518793 C A MED14 Missense_Mutation p.V1251L 0.65 deleterious(0.01) possibly_damaging(0.863) TCGA-EE-A2GC-06 X 41203370 41203370 G A DDX3X Missense_Mutation p.E285K 0.67 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 X 43603700 43603700 C T MAOA Silent p.S508S 0.73 TCGA-EE-A2GC-06 X 47034426 47034426 C T RBM10 Missense_Mutation p.R171W 0.86 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2GC-06 X 47065792 47065792 C T UBA1 Silent p.I629I 0.74 TCGA-EE-A2GC-06 X 48674442 48674442 C T HDAC6 Silent p.H492H 0.67 TCGA-EE-A2GC-06 X 49070637 49070637 G A CACNA1F Silent p.I1241I 0.73 TCGA-EE-A2GC-06 X 50052004 50052004 C T CCNB3 Missense_Mutation p.P279S 0.76 tolerated(0.24) benign(0.01) TCGA-EE-A2GC-06 X 52674490 52674490 G A SSX7 Intron 0.59 TCGA-EE-A2GC-06 X 55249139 55249139 G A PAGE5 Silent p.G112G 0.83 TCGA-EE-A2GC-06 X 55650332 55650332 G A FOXR2 Missense_Mutation p.R63K 0.48 tolerated(1) benign(0.006) TCGA-EE-A2GC-06 X 5811415 5811415 T A NLGN4X Missense_Mutation p.I632L 0.31 tolerated(0.69) benign(0) TCGA-EE-A2GC-06 X 63574716 63574716 C T MTMR8 Missense_Mutation p.G137R 0.66 tolerated(0.51) benign(0.001) TCGA-EE-A2GC-06 X 66788842 66788842 C T AR Intron 0.74 TCGA-EE-A2GC-06 X 71359251 71359251 A G NHSL2 Missense_Mutation p.Q618R 0.77 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A2GC-06 X 71804146 71804146 C T PHKA1 Missense_Mutation p.G1084R 0.74 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GC-06 X 73045886 73045886 C T XIST RNA 0.79 TCGA-EE-A2GC-06 X 73960452 73960452 G A KIAA2022 Nonsense_Mutation p.Q1314* 0.73 TCGA-EE-A2GC-06 X 75004776 75004776 G A MAGEE2 Silent p.S37S 0.78 TCGA-EE-A2GC-06 X 76931741 76931741 G T ATRX Missense_Mutation p.D1263E 0.80 benign(0.059) TCGA-EE-A2GC-06 X 78426748 78426748 C T GPR174 Missense_Mutation p.H82Y 0.62 tolerated(0.14) benign(0.002) TCGA-EE-A2GC-06 X 79281235 79281235 C T TBX22 Missense_Mutation p.R198C 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2GC-06 X 79699271 79699271 A T FAM46D 3'UTR 0.89 TCGA-EE-A2GC-06 X 83128722 83128722 G A CYLC1 Missense_Mutation p.E336K 0.39 deleterious(0.01) unknown(0) TCGA-EE-A2GC-06 X 85969583 85969583 C T DACH2 Missense_Mutation p.P322S 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A2GC-06 X 90691564 90691564 C T PABPC5 Missense_Mutation p.R330W 0.73 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GC-06 Y 14954236 14954236 T A USP9Y Missense_Mutation p.F2095I 0.68 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2GC-06 Y 2655550 2655550 G A SRY Missense_Mutation p.S32F 0.68 tolerated(0.27) probably_damaging(0.997) TCGA-EE-A2GC-06 Y 4968742 4968742 C T PCDH11Y Silent p.T1041T 0.84 TCGA-EE-A2GD-06 10 103900969 103900969 C T PPRC1 Missense_Mutation p.L902F 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.771) TCGA-EE-A2GD-06 10 105185072 105185072 C T PDCD11 Missense_Mutation p.T1032I 0.25 tolerated(0.08) possibly_damaging(0.493) TCGA-EE-A2GD-06 10 106128220 106128220 C T CCDC147 Nonsense_Mutation p.Q278* 0.27 TCGA-EE-A2GD-06 10 116247758 116247758 G C ABLIM1 Missense_Mutation p.P334A 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2GD-06 10 125798028 125798028 C A CHST15 Intron 0.32 TCGA-EE-A2GD-06 10 129903322 129903322 G A MKI67 Missense_Mutation p.S2261L 0.22 tolerated(0.11) probably_damaging(0.927) TCGA-EE-A2GD-06 10 133967437 133967437 G A JAKMIP3 Silent p.K719K 0.14 TCGA-EE-A2GD-06 10 24721967 24721967 G A KIAA1217 Silent p.R199R 0.14 TCGA-EE-A2GD-06 10 25878032 25878032 T C GPR158 Missense_Mutation p.V617A 0.17 deleterious(0) possibly_damaging(0.515) TCGA-EE-A2GD-06 10 25887246 25887246 G A GPR158 Silent p.S897S 0.15 TCGA-EE-A2GD-06 10 26822407 26822407 G A APBB1IP Missense_Mutation p.E285K 0.20 deleterious(0.05) benign(0.013) TCGA-EE-A2GD-06 10 28233336 28233336 C T ARMC4 Missense_Mutation p.E520K 0.21 tolerated(0.14) benign(0.188) TCGA-EE-A2GD-06 10 43609123 43609123 G A RET Missense_Mutation p.D627N 0.33 tolerated(0.37) benign(0.024) TCGA-EE-A2GD-06 10 50835666 50835666 G A CHAT Missense_Mutation p.D316N 0.33 tolerated(0.05) benign(0.417) TCGA-EE-A2GD-06 10 52573658 52573658 G A A1CF Missense_Mutation p.P436S 0.21 tolerated(0.09) benign(0.138) TCGA-EE-A2GD-06 10 5437347 5437347 G A TUBAL3 Silent p.G113G 0.10 TCGA-EE-A2GD-06 10 61833536 61833536 C T ANK3 Missense_Mutation p.G2368E 0.13 benign(0.173) TCGA-EE-A2GD-06 10 61956324 61956324 G A ANK3 Silent p.L583L 0.23 TCGA-EE-A2GD-06 10 62039337 62039337 C T ANK3 Missense_Mutation p.D59N 0.26 probably_damaging(0.991) TCGA-EE-A2GD-06 10 7218091 7218091 G A SFMBT2 Silent p.I615I 0.14 TCGA-EE-A2GD-06 10 7679438 7679438 C T ITIH5 Silent p.E135E 0.27 TCGA-EE-A2GD-06 10 88476105 88476105 C T LDB3 Missense_Mutation p.P423L 0.21 deleterious(0.03) benign(0.164) TCGA-EE-A2GD-06 10 90427359 90427359 G A LIPF Missense_Mutation p.E57K 0.18 deleterious(0.01) possibly_damaging(0.675) TCGA-EE-A2GD-06 10 96447941 96447941 C T CYP2C18 Silent p.L131L 0.17 TCGA-EE-A2GD-06 10 96701967 96701967 G A CYP2C9 Missense_Mutation p.G117E 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2GD-06 11 110477462 110477462 G A ARHGAP20 Missense_Mutation p.P263S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 11 111941404 111941404 C T PIH1D2 Missense_Mutation p.R190Q 0.23 tolerated(0.35) benign(0.067) TCGA-EE-A2GD-06 11 113608318 113608318 G A ZW10 Silent p.V664V 0.21 TCGA-EE-A2GD-06 11 116692323 116692323 C T APOA4 Missense_Mutation p.E151K 0.18 tolerated(0.06) possibly_damaging(0.468) TCGA-EE-A2GD-06 11 118428546 118428546 A C IFT46 Silent p.V35V 0.19 TCGA-EE-A2GD-06 11 119170400 119170400 C T CBL Missense_Mutation p.A877V 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A2GD-06 11 123756020 123756020 G A TMEM225 Missense_Mutation p.S38L 0.10 tolerated(1) benign(0.027) TCGA-EE-A2GD-06 11 123777165 123777165 G A OR8D4 Silent p.V9V 0.08 TCGA-EE-A2GD-06 11 123777295 123777295 C T OR8D4 Missense_Mutation p.R53C 0.16 deleterious(0) benign(0.006) TCGA-EE-A2GD-06 11 123777304 123777304 C T OR8D4 Missense_Mutation p.H56Y 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GD-06 11 123814338 123814338 C A OR6T1 Nonsense_Mutation p.E70* 0.12 TCGA-EE-A2GD-06 11 123814339 123814339 C T OR6T1 Silent p.L69L 0.10 TCGA-EE-A2GD-06 11 123886830 123886830 C T OR10G4 Silent p.I183I 0.25 TCGA-EE-A2GD-06 11 124489648 124489648 C T PANX3 Silent p.F332F 0.18 TCGA-EE-A2GD-06 11 124637187 124637187 G A MSANTD2 Missense_Mutation p.S470F 0.15 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-EE-A2GD-06 11 129734592 129734592 C T NFRKB 3'UTR 0.19 TCGA-EE-A2GD-06 11 130066550 130066550 G A ST14 Missense_Mutation p.D437N 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GD-06 11 193724 193724 G A SCGB1C1 Missense_Mutation p.G23E 0.10 deleterious(0.01) benign(0.36) TCGA-EE-A2GD-06 11 25100118 25100118 T C LUZP2 Missense_Mutation p.C319R 0.26 tolerated_low_confidence(0.2) benign(0.408) TCGA-EE-A2GD-06 11 28311899 28311899 C T METTL15 Missense_Mutation p.S185F 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 11 44074611 44074611 G A ACCSL Missense_Mutation p.R314K 0.22 tolerated(1) benign(0.01) TCGA-EE-A2GD-06 11 4567353 4567353 G A OR52M1 Silent p.R311R 0.24 TCGA-EE-A2GD-06 11 48347004 48347004 G A OR4C3 Missense_Mutation p.G171E 0.17 deleterious(0.04) possibly_damaging(0.856) TCGA-EE-A2GD-06 11 4843347 4843347 C T OR51F2 Silent p.S244S 0.15 TCGA-EE-A2GD-06 11 49170281 49170281 G A FOLH1 Missense_Mutation p.P658L 0.20 tolerated(0.07) benign(0.055) TCGA-EE-A2GD-06 11 49196459 49196459 C T FOLH1 Missense_Mutation p.G364R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 11 4976283 4976283 G A OR51A2 Silent p.L221L 0.14 TCGA-EE-A2GD-06 11 51515284 51515284 G A OR4C46 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0.01) benign(0.078) TCGA-EE-A2GD-06 11 5345070 5345070 G A OR51B2 Missense_Mutation p.S153F 0.24 tolerated(0.71) benign(0.033) TCGA-EE-A2GD-06 11 55111031 55111031 G A OR4A16 Missense_Mutation p.D119N 0.14 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-EE-A2GD-06 11 55563223 55563223 C T OR5D14 Silent p.F64F 0.13 TCGA-EE-A2GD-06 11 55594880 55594880 C T OR5L2 Silent p.F62F 0.18 TCGA-EE-A2GD-06 11 55681168 55681168 C T OR5W2 Silent p.V297V 0.38 TCGA-EE-A2GD-06 11 55735767 55735767 G A OR10AG1 Missense_Mutation p.S58F 0.32 deleterious(0) possibly_damaging(0.767) TCGA-EE-A2GD-06 11 55798741 55798741 C T OR5AS1 Missense_Mutation p.P283S 0.21 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GD-06 11 56043507 56043507 T C OR5T1 Silent p.A131A 0.21 TCGA-EE-A2GD-06 11 56757090 56757090 G A OR5AK2 Silent p.R234R 0.25 TCGA-EE-A2GD-06 11 58602168 58602168 G A GLYATL2 Missense_Mutation p.P207S 0.33 tolerated(0.12) benign(0.133) TCGA-EE-A2GD-06 11 58919775 58919776 TG - FAM111A Frame_Shift_Del p.V213Lfs*25 0.12 TCGA-EE-A2GD-06 11 60068490 60068490 C T MS4A4A Missense_Mutation p.S116F 0.21 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GD-06 11 60470945 60470945 G A MS4A8 Missense_Mutation p.G105E 0.17 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GD-06 11 62349026 62349026 C T TUT1 Missense_Mutation p.G179R 0.23 tolerated(0.15) benign(0.069) TCGA-EE-A2GD-06 11 62747343 62747343 A C SLC22A6 Missense_Mutation p.V372G 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 11 63057913 63057913 C T SLC22A10 Silent p.V92V 0.19 TCGA-EE-A2GD-06 11 63257736 63257743 TGTTCTAA - HRASLS5 Frame_Shift_Del p.L81Gfs*13 0.18 TCGA-EE-A2GD-06 11 64359259 64359259 C T SLC22A12 Silent p.I77I 0.21 TCGA-EE-A2GD-06 11 6461515 6461515 C T HPX Silent p.G72G 0.14 TCGA-EE-A2GD-06 11 65810674 65810674 G A GAL3ST3 Silent p.F200F 0.22 TCGA-EE-A2GD-06 11 674755 674755 G A DEAF1 Silent p.V428V 0.21 TCGA-EE-A2GD-06 11 70336410 70336410 C A SHANK2 Missense_Mutation p.R842L 0.17 deleterious(0.02) possibly_damaging(0.505) TCGA-EE-A2GD-06 11 77412910 77412910 A T RSF1 Missense_Mutation p.F455Y 0.18 tolerated_low_confidence(1) benign(0.178) TCGA-EE-A2GD-06 11 8161542 8161542 A T RIC3 Missense_Mutation p.F108Y 0.24 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A2GD-06 11 85435627 85435627 G T SYTL2 Missense_Mutation p.H625N 0.36 tolerated(0.11) benign(0.005) TCGA-EE-A2GD-06 11 92086925 92086925 C G FAT3 Silent p.A549A 0.23 TCGA-EE-A2GD-06 11 94040624 94040624 C T FOLR4 Silent p.L166L 0.14 TCGA-EE-A2GD-06 11 94129668 94129668 C T GPR83 Nonsense_Mutation p.W137* 0.33 TCGA-EE-A2GD-06 12 100564728 100564728 C T RP11-175P13.3 3'Flank 0.18 TCGA-EE-A2GD-06 12 100564729 100564729 T C RP11-175P13.3 3'Flank 0.18 TCGA-EE-A2GD-06 12 102811618 102811618 C T IGF1 Missense_Mutation p.C189Y 0.15 tolerated_low_confidence(0.38) benign(0.001) TCGA-EE-A2GD-06 12 11339169 11339169 C T TAS2R42 Silent p.R125R 0.18 TCGA-EE-A2GD-06 12 120222828 120222828 G A CIT Missense_Mutation p.S446F 0.34 deleterious(0.01) possibly_damaging(0.76) TCGA-EE-A2GD-06 12 129278778 129278778 G A SLC15A4 Missense_Mutation p.S566L 0.11 tolerated(0.06) benign(0.027) TCGA-EE-A2GD-06 12 130648678 130648678 C T FZD10 Silent p.F397F 0.23 TCGA-EE-A2GD-06 12 13241730 13241730 C T GSG1 Intron 0.25 TCGA-EE-A2GD-06 12 132426184 132426184 G T PUS1 Missense_Mutation p.V298F 0.22 deleterious(0) probably_damaging(0.936) TCGA-EE-A2GD-06 12 14695164 14695164 C T PLBD1 Missense_Mutation p.D133N 0.15 tolerated(0.27) benign(0.01) TCGA-EE-A2GD-06 12 18691146 18691146 G A PIK3C2G Missense_Mutation p.G1086E 0.17 tolerated(0.39) probably_damaging(0.999) TCGA-EE-A2GD-06 12 21196405 21196405 G A SLCO1B7 Missense_Mutation p.E242K 0.14 tolerated(0.2) benign(0.051) TCGA-EE-A2GD-06 12 40078685 40078685 G A C12orf40 Missense_Mutation p.E435K 0.19 tolerated(0.13) benign(0.187) TCGA-EE-A2GD-06 12 41967416 41967416 G A PDZRN4 Silent p.E945E 0.25 TCGA-EE-A2GD-06 12 46285682 46285682 C T ARID2 Missense_Mutation p.S1681F 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 12 46601349 46601349 G A SLC38A1 Silent p.F148F 0.14 TCGA-EE-A2GD-06 12 47471280 47471280 C T AMIGO2 Silent p.G502G 0.29 TCGA-EE-A2GD-06 12 47628897 47628897 C T PCED1B Silent p.F17F 0.22 TCGA-EE-A2GD-06 12 49445231 49445231 G A KMT2D Silent p.P745P 0.26 TCGA-EE-A2GD-06 12 51853762 51853762 C T SLC4A8 Missense_Mutation p.P295S 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 12 52080890 52080890 G A SCN8A Silent p.G167G 0.10 TCGA-EE-A2GD-06 12 52799828 52799828 G A KRT82 Silent p.F78F 0.19 TCGA-EE-A2GD-06 12 52885419 52885419 G A KRT6A Silent p.F214F 0.19 TCGA-EE-A2GD-06 12 56031319 56031319 T A OR10P1 Missense_Mutation p.I215N 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GD-06 12 56031320 56031320 T C OR10P1 Silent p.I215I 0.17 TCGA-EE-A2GD-06 12 56349608 56349608 G A PMEL Missense_Mutation p.S504F 0.22 tolerated(0.08) benign(0.149) TCGA-EE-A2GD-06 12 68052401 68052401 T C DYRK2 Missense_Mutation p.S572P 0.17 tolerated(0.21) benign(0.019) TCGA-EE-A2GD-06 12 6857988 6857988 G A MLF2 Silent p.S240S 0.17 TCGA-EE-A2GD-06 12 70988417 70988417 C T PTPRB Missense_Mutation p.R449Q 0.11 tolerated(0.53) benign(0.013) TCGA-EE-A2GD-06 12 7521994 7521994 C T CD163L1 Missense_Mutation p.S1333N 0.22 tolerated(0.14) benign(0.044) TCGA-EE-A2GD-06 12 7900065 7900065 C T CLEC4C 5'UTR 0.50 TCGA-EE-A2GD-06 12 7981304 7981304 C T SLC2A14 Silent p.T247T 0.19 TCGA-EE-A2GD-06 12 8687308 8687308 T C CLEC4E Missense_Mutation p.T196A 0.25 tolerated(0.08) benign(0.022) TCGA-EE-A2GD-06 12 8691861 8691861 G A CLEC4E Nonsense_Mutation p.Q58* 0.17 TCGA-EE-A2GD-06 12 95603337 95603337 G A FGD6 Missense_Mutation p.P575S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 13 110814651 110814651 C T COL4A1 Missense_Mutation p.G1463E 0.17 unknown(0) TCGA-EE-A2GD-06 13 19748188 19748188 G A TUBA3C Missense_Mutation p.R390C 0.15 deleterious_low_confidence(0.01) benign(0.042) TCGA-EE-A2GD-06 13 25281469 25281469 G A ATP12A Silent p.K803K 0.20 TCGA-EE-A2GD-06 13 33700224 33700224 G A STARD13 Silent p.L692L 0.17 TCGA-EE-A2GD-06 13 38210986 38210986 C A TRPC4 3'UTR 0.15 TCGA-EE-A2GD-06 13 39542552 39542552 C T STOML3 Silent p.R212R 0.15 TCGA-EE-A2GD-06 13 49749546 49749546 C T FNDC3A Missense_Mutation p.P467S 0.26 deleterious(0.03) possibly_damaging(0.867) TCGA-EE-A2GD-06 13 51936089 51936089 G A SERPINE3 Missense_Mutation p.G411S 0.14 tolerated_low_confidence(0.57) benign(0) TCGA-EE-A2GD-06 13 52531657 52531657 G A ATP7B Silent p.I814I 0.28 TCGA-EE-A2GD-06 13 52534368 52534368 G A ATP7B Silent p.H679H 0.18 TCGA-EE-A2GD-06 13 53624636 53624636 G A OLFM4 Nonsense_Mutation p.W421* 0.16 TCGA-EE-A2GD-06 13 61986959 61986959 C T PCDH20 Missense_Mutation p.E425K 0.22 tolerated(0.51) benign(0.017) TCGA-EE-A2GD-06 13 78167696 78167696 G A SCEL Missense_Mutation p.R247K 0.39 tolerated(1) benign(0.003) TCGA-EE-A2GD-06 14 100344868 100344868 C T EML1 Nonsense_Mutation p.R163* 0.14 TCGA-EE-A2GD-06 14 100728746 100728746 C T YY1 Missense_Mutation p.P262L 0.12 deleterious(0.04) benign(0.082) TCGA-EE-A2GD-06 14 105411557 105411557 C T AHNAK2 Missense_Mutation p.V3411M 0.19 possibly_damaging(0.493) TCGA-EE-A2GD-06 14 106092212 106092212 G A IGHG4 Silent p.S64S 0.17 TCGA-EE-A2GD-06 14 106236019 106236019 G A IGHG3 Silent p.I262I 0.20 TCGA-EE-A2GD-06 14 20344937 20344937 C T OR4K2 Missense_Mutation p.P171S 0.12 deleterious(0.02) benign(0.258) TCGA-EE-A2GD-06 14 20665930 20665930 G A OR11G2 Missense_Mutation p.G146S 0.11 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GD-06 14 20666414 20666414 G A OR11G2 Missense_Mutation p.G307E 0.10 tolerated(0.21) benign(0.073) TCGA-EE-A2GD-06 14 22134223 22134223 G A OR4E2 Silent p.T309T 0.12 TCGA-EE-A2GD-06 14 22434112 22434112 C T TRAV12-3 Silent p.F55F 0.15 TCGA-EE-A2GD-06 14 22675966 22675966 C T TRAV34 Missense_Mutation p.S93F 0.23 tolerated(0.4) benign(0.084) TCGA-EE-A2GD-06 14 24706750 24706750 G T GMPR2 Missense_Mutation p.D245Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GD-06 14 24877120 24877120 C T NYNRIN Missense_Mutation p.R82C 0.18 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-EE-A2GD-06 14 32560026 32560026 C T ARHGAP5 Missense_Mutation p.P51S 0.22 tolerated(0.77) benign(0.002) TCGA-EE-A2GD-06 14 38061747 38061747 G T FOXA1 Missense_Mutation p.A81E 0.22 tolerated(0.49) benign(0.395) TCGA-EE-A2GD-06 14 42355818 42355818 C T LRFN5 5'UTR 0.29 TCGA-EE-A2GD-06 14 42356113 42356113 C T LRFN5 Silent p.F95F 0.20 TCGA-EE-A2GD-06 14 51243724 51243724 G A NIN Silent p.N203N 0.15 TCGA-EE-A2GD-06 14 52520650 52520650 G A NID2 Missense_Mutation p.S359F 0.13 deleterious(0.01) benign(0.014) TCGA-EE-A2GD-06 14 52781333 52781333 G A PTGER2 Missense_Mutation p.E23K 0.17 tolerated(0.35) benign(0.155) TCGA-EE-A2GD-06 14 65253310 65253310 C T SPTB Missense_Mutation p.E1125K 0.16 tolerated(0.06) benign(0.026) TCGA-EE-A2GD-06 14 72200398 72200398 C T SIPA1L1 Missense_Mutation p.S1647L 0.17 deleterious(0) benign(0.313) TCGA-EE-A2GD-06 14 72926360 72926360 G A RGS6 Silent p.S121S 0.26 TCGA-EE-A2GD-06 14 76012890 76012890 T G BATF Missense_Mutation p.V85G 0.29 deleterious(0) probably_damaging(0.939) TCGA-EE-A2GD-06 14 77705057 77705057 C T TMEM63C Silent p.I224I 0.22 TCGA-EE-A2GD-06 14 86089851 86089851 G A FLRT2 3'UTR 0.22 TCGA-EE-A2GD-06 15 22853802 22853802 C T TUBGCP5 Silent p.I480I 0.17 TCGA-EE-A2GD-06 15 24921455 24921455 G A NPAP1 Silent p.E147E 0.16 TCGA-EE-A2GD-06 15 24922786 24922786 C T NPAP1 Missense_Mutation p.S591F 0.15 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GD-06 15 25448439 25448439 G A SNORD115-18 RNA 0.19 TCGA-EE-A2GD-06 15 30665240 30665240 A G CHRFAM7A Missense_Mutation p.L90P 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 15 34543123 34543123 C T SLC12A6 Missense_Mutation p.G490E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 15 43571937 43571937 G A TGM7 Missense_Mutation p.R522W 0.19 tolerated(0.1) benign(0.003) TCGA-EE-A2GD-06 15 62214711 62214711 A G VPS13C Missense_Mutation p.L2287S 0.15 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GD-06 15 63029239 63029239 C T TLN2 Missense_Mutation p.A1174V 0.09 tolerated(0.16) benign(0.007) TCGA-EE-A2GD-06 15 63932434 63932434 G A HERC1 Silent p.L3940L 0.21 TCGA-EE-A2GD-06 15 64968417 64968417 C A ZNF609 Silent p.R1122R 0.27 TCGA-EE-A2GD-06 15 65627726 65627726 G A IGDCC3 Silent p.I196I 0.23 TCGA-EE-A2GD-06 15 70348702 70348702 G A TLE3 Silent p.D424D 0.18 TCGA-EE-A2GD-06 15 72643459 72643459 G A HEXA Intron 0.24 TCGA-EE-A2GD-06 15 73635879 73635879 C T HCN4 Silent p.V352V 0.19 TCGA-EE-A2GD-06 15 75108813 75108813 G A LMAN1L Missense_Mutation p.G126R 0.18 tolerated(0.07) possibly_damaging(0.517) TCGA-EE-A2GD-06 15 75310765 75310765 G A SCAMP5 Nonsense_Mutation p.W134* 0.19 TCGA-EE-A2GD-06 15 88423566 88423566 C T NTRK3 Missense_Mutation p.G757R 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 15 89416190 89416190 G A ACAN Missense_Mutation p.E2423K 0.27 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GD-06 15 89753551 89753551 C T RLBP1 Missense_Mutation p.G307S 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A2GD-06 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.14 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2GD-06 16 10032123 10032123 C T GRIN2A Missense_Mutation p.D234N 0.25 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A2GD-06 16 12136810 12136810 T C SNX29 Missense_Mutation p.F102L 0.19 deleterious(0.01) benign(0.078) TCGA-EE-A2GD-06 16 16243962 16243962 C T ABCC6 3'UTR 0.41 TCGA-EE-A2GD-06 16 19278239 19278239 C T SYT17 Silent p.I422I 0.35 TCGA-EE-A2GD-06 16 20329707 20329707 C A GP2 Missense_Mutation p.R354S 0.17 deleterious(0.02) benign(0.403) TCGA-EE-A2GD-06 16 21156557 21156557 T C DNAH3 Silent p.Q131Q 0.16 TCGA-EE-A2GD-06 16 24580295 24580295 C T RBBP6 Missense_Mutation p.P762S 0.13 tolerated_low_confidence(0.13) unknown(0) TCGA-EE-A2GD-06 16 28507134 28507134 G A APOBR Missense_Mutation p.E258K 0.33 tolerated(0.16) benign(0.313) TCGA-EE-A2GD-06 16 28883930 28883930 C T SH2B1 Missense_Mutation p.L601F 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 16 28883932 28883932 C T SH2B1 Silent p.L601L 0.20 TCGA-EE-A2GD-06 16 28992876 28992876 C G SPNS1 Nonsense_Mutation p.S250* 0.19 TCGA-EE-A2GD-06 16 3254555 3254555 C T OR1F1 Silent p.F103F 0.18 TCGA-EE-A2GD-06 16 3304734 3304734 C T MEFV Missense_Mutation p.E112K 0.21 deleterious(0.03) possibly_damaging(0.632) TCGA-EE-A2GD-06 16 46715297 46715297 G A VPS35 Silent p.I105I 0.12 TCGA-EE-A2GD-06 16 48174678 48174678 G A ABCC12 Missense_Mutation p.R193W 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GD-06 16 48174679 48174679 G A ABCC12 Silent p.I192I 0.12 TCGA-EE-A2GD-06 16 49671240 49671240 G T ZNF423 Missense_Mutation p.S608Y 0.12 deleterious(0.04) probably_damaging(0.947) TCGA-EE-A2GD-06 16 55703514 55703514 C T SLC6A2 Silent p.I104I 0.08 TCGA-EE-A2GD-06 16 57760123 57760123 C T CCDC135 Silent p.F634F 0.22 TCGA-EE-A2GD-06 16 67003606 67003606 G A CES3 Missense_Mutation p.E363K 0.24 tolerated(0.87) benign(0.438) TCGA-EE-A2GD-06 16 70954782 70954782 C T HYDIN Silent p.Q2499Q 0.33 TCGA-EE-A2GD-06 16 7382944 7382944 C T RBFOX1 5'UTR 0.25 TCGA-EE-A2GD-06 16 81121264 81121264 C T GCSH Silent p.A78A 0.23 TCGA-EE-A2GD-06 16 82033436 82033436 C T SDR42E1 Silent p.R154R 0.09 TCGA-EE-A2GD-06 16 84600517 84600517 C T COTL1 Silent p.E121E 0.17 TCGA-EE-A2GD-06 17 10350414 10350414 G A MYH4 Silent p.S1695S 0.20 TCGA-EE-A2GD-06 17 10352002 10352002 C T MYH4 Silent p.V1488V 0.22 TCGA-EE-A2GD-06 17 10432309 10432309 C T MYH2 Missense_Mutation p.E1148K 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2GD-06 17 11520890 11520890 G A DNAH9 Missense_Mutation p.G356E 0.13 benign(0.014) TCGA-EE-A2GD-06 17 11539999 11539999 G A DNAH9 Missense_Mutation p.D562N 0.16 benign(0.049) TCGA-EE-A2GD-06 17 11572782 11572782 C A DNAH9 Missense_Mutation p.S1008R 0.18 benign(0.004) TCGA-EE-A2GD-06 17 11666926 11666926 G A DNAH9 Missense_Mutation p.D2389N 0.19 probably_damaging(0.918) TCGA-EE-A2GD-06 17 11696952 11696952 C T DNAH9 Nonsense_Mutation p.Q2732* 0.09 TCGA-EE-A2GD-06 17 12901793 12901793 G A ELAC2 Missense_Mutation p.L486F 0.11 deleterious(0.04) probably_damaging(0.95) TCGA-EE-A2GD-06 17 15492167 15492167 C T CDRT1 3'UTR 0.16 TCGA-EE-A2GD-06 17 16342588 16342588 G A TRPV2 3'Flank 0.18 TCGA-EE-A2GD-06 17 17425608 17425608 G A PEMT Silent p.F102F 0.16 TCGA-EE-A2GD-06 17 21319155 21319155 C T KCNJ12 Silent p.I167I 0.09 TCGA-EE-A2GD-06 17 26821090 26821090 C T SLC13A2 Missense_Mutation p.P434S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 17 29120513 29120513 G A CRLF3 Missense_Mutation p.P261S 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GD-06 17 34236539 34236539 C T AC015849.16 RNA 0.23 TCGA-EE-A2GD-06 17 36484681 36484681 C T GPR179 Missense_Mutation p.E1591K 0.17 tolerated(0.1) benign(0.23) TCGA-EE-A2GD-06 17 37070713 37070713 C T LASP1 Missense_Mutation p.P165S 0.24 tolerated(0.19) benign(0.005) TCGA-EE-A2GD-06 17 37187807 37187807 G A CTD-2206N4.2 5'Flank 0.20 TCGA-EE-A2GD-06 17 39506827 39506827 C T KRT33A Missense_Mutation p.D65N 0.11 tolerated(0.11) benign(0.262) TCGA-EE-A2GD-06 17 39767698 39767698 G A KRT16 Missense_Mutation p.R224C 0.15 tolerated(0.06) possibly_damaging(0.479) TCGA-EE-A2GD-06 17 45822488 45822488 C T TBX21 Missense_Mutation p.P455L 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2GD-06 17 47121384 47121384 C T IGF2BP1 Missense_Mutation p.A419V 0.22 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A2GD-06 17 48559767 48559767 C T RSAD1 Missense_Mutation p.L264F 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GD-06 17 5087335 5087335 G A ZNF594 Missense_Mutation p.P73S 0.13 tolerated(0.77) possibly_damaging(0.829) TCGA-EE-A2GD-06 17 53851191 53851191 T G PCTP Missense_Mutation p.V149G 0.19 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2GD-06 17 56232787 56232787 G A OR4D1 Silent p.T91T 0.27 TCGA-EE-A2GD-06 17 59067551 59067551 C T BCAS3 Missense_Mutation p.P481S 0.25 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A2GD-06 17 71202924 71202924 T A COG1 Missense_Mutation p.H899Q 0.15 deleterious(0) probably_damaging(0.934) TCGA-EE-A2GD-06 17 7252386 7252386 C T ACAP1 Missense_Mutation p.S584F 0.13 deleterious(0.03) possibly_damaging(0.83) TCGA-EE-A2GD-06 17 7366011 7366011 G A ZBTB4 Missense_Mutation p.R764C 0.17 probably_damaging(0.985) TCGA-EE-A2GD-06 17 73836339 73836339 C A UNC13D Missense_Mutation p.Q275H 0.26 tolerated(0.12) benign(0.012) TCGA-EE-A2GD-06 17 76063945 76063945 C T TNRC6C Nonsense_Mutation p.Q904* 0.19 TCGA-EE-A2GD-06 17 76525710 76525710 C T DNAH17 Silent p.G1117G 0.16 TCGA-EE-A2GD-06 17 76570813 76570813 C T DNAH17 Silent p.L109L 0.15 TCGA-EE-A2GD-06 17 7660431 7660431 G A DNAH2 Missense_Mutation p.E643K 0.18 probably_damaging(1) TCGA-EE-A2GD-06 17 7661813 7661813 G A DNAH2 Silent p.R684R 0.15 TCGA-EE-A2GD-06 17 7697628 7697628 C T DNAH2 Silent p.S2542S 0.23 TCGA-EE-A2GD-06 17 78291019 78291019 C T RNF213 Missense_Mutation p.P948L 0.21 possibly_damaging(0.672) TCGA-EE-A2GD-06 17 7833878 7833878 G A TRAPPC1 3'UTR 0.13 TCGA-EE-A2GD-06 17 7989341 7989341 C T ALOX12B Silent p.E115E 0.31 TCGA-EE-A2GD-06 17 9792967 9792967 G A GLP2R Missense_Mutation p.G536E 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A2GD-06 18 12840734 12840734 C T PTPN2 Intron 0.28 TCGA-EE-A2GD-06 18 28914045 28914045 G A DSG1 Silent p.L295L 0.23 TCGA-EE-A2GD-06 18 346919 346919 G A COLEC12 Nonsense_Mutation p.Q235* 0.08 TCGA-EE-A2GD-06 18 50683815 50683815 C T DCC Missense_Mutation p.P451S 0.11 tolerated(0.05) possibly_damaging(0.536) TCGA-EE-A2GD-06 18 51013311 51013311 G A DCC Missense_Mutation p.G1294E 0.24 tolerated(0.58) benign(0.098) TCGA-EE-A2GD-06 18 57115224 57115224 C T CCBE1 Missense_Mutation p.G256S 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GD-06 18 6973109 6973109 C T LAMA1 Missense_Mutation p.D2241N 0.14 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GD-06 18 74620486 74620486 G A ZNF236 Silent p.G834G 0.22 TCGA-EE-A2GD-06 19 10250810 10250810 G A DNMT1 Missense_Mutation p.P1240S 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GD-06 19 10402719 10402719 C T ICAM5 Missense_Mutation p.P228S 0.14 tolerated(0.39) benign(0.07) TCGA-EE-A2GD-06 19 12576106 12576106 G A ZNF709 Silent p.T210T 0.24 TCGA-EE-A2GD-06 19 12874531 12874531 G A HOOK2 Missense_Mutation p.S630F 0.15 deleterious(0) benign(0.287) TCGA-EE-A2GD-06 19 13476158 13476158 G A CACNA1A Missense_Mutation p.H253Y 0.19 possibly_damaging(0.607) TCGA-EE-A2GD-06 19 15276318 15276318 G A NOTCH3 Silent p.I1892I 0.14 TCGA-EE-A2GD-06 19 15300099 15300099 C T NOTCH3 Missense_Mutation p.D393N 0.22 tolerated(0.07) probably_damaging(1) TCGA-EE-A2GD-06 19 15654985 15654985 T G CYP4F22 Missense_Mutation p.I344S 0.22 deleterious(0) benign(0.053) TCGA-EE-A2GD-06 19 18677989 18677990 - T KXD1 Splice_Site p.X101_splice 0.27 TCGA-EE-A2GD-06 19 21365844 21365844 C T ZNF431 Silent p.T246T 0.17 TCGA-EE-A2GD-06 19 22364330 22364330 G A ZNF676 Silent p.F63F 0.17 TCGA-EE-A2GD-06 19 24309748 24309748 C T ZNF254 Missense_Mutation p.H316Y 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GD-06 19 30164947 30164947 C T PLEKHF1 Silent p.I67I 0.15 TCGA-EE-A2GD-06 19 33321549 33321549 G A SLC7A9 Missense_Mutation p.P481S 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GD-06 19 33587228 33587228 C T GPATCH1 Missense_Mutation p.P243L 0.36 deleterious(0) possibly_damaging(0.636) TCGA-EE-A2GD-06 19 34699852 34699852 C T LSM14A Missense_Mutation p.S145F 0.19 tolerated(0.17) possibly_damaging(0.583) TCGA-EE-A2GD-06 19 35850335 35850335 C T FFAR3 Silent p.L181L 0.14 TCGA-EE-A2GD-06 19 371237 371237 G A THEG Missense_Mutation p.R241C 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GD-06 19 37130870 37130870 A G ZNF461 Missense_Mutation p.V126A 0.18 tolerated(0.43) benign(0) TCGA-EE-A2GD-06 19 37210565 37210565 A G ZNF567 Silent p.E282E 0.18 TCGA-EE-A2GD-06 19 38991599 38991599 C T RYR1 Missense_Mutation p.P2528L 0.13 benign(0.022) TCGA-EE-A2GD-06 19 3979950 3979950 G A EEF2 Silent p.T487T 0.18 TCGA-EE-A2GD-06 19 40542123 40542123 G A ZNF780B Missense_Mutation p.H215Y 0.14 deleterious(0.02) possibly_damaging(0.684) TCGA-EE-A2GD-06 19 42092902 42092902 C T CEACAM21 3'UTR 0.12 TCGA-EE-A2GD-06 19 42221642 42221642 G A CEACAM5 Silent p.L409L 0.19 TCGA-EE-A2GD-06 19 42753161 42753161 G A ERF Missense_Mutation p.S368F 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.485) TCGA-EE-A2GD-06 19 42839536 42839536 C T MEGF8 Missense_Mutation p.P276L 0.14 deleterious(0) possibly_damaging(0.822) TCGA-EE-A2GD-06 19 43429959 43429959 C T PSG7 Silent p.K403K 0.56 TCGA-EE-A2GD-06 19 43680107 43680107 C T PSG5 Silent p.T208T 0.14 TCGA-EE-A2GD-06 19 44418288 44418288 G A ZNF45 Missense_Mutation p.H434Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 19 44891904 44891904 C T ZNF285 Missense_Mutation p.G168E 0.21 tolerated(0.15) benign(0.058) TCGA-EE-A2GD-06 19 4491797 4491797 C T HDGFRP2 Missense_Mutation p.P215S 0.19 tolerated(0.07) unknown(0) TCGA-EE-A2GD-06 19 45811753 45811753 C T CKM Missense_Mutation p.E231K 0.28 deleterious(0.04) possibly_damaging(0.717) TCGA-EE-A2GD-06 19 46307998 46307998 C T RSPH6A Missense_Mutation p.E389K 0.29 tolerated(0.09) benign(0.301) TCGA-EE-A2GD-06 19 46388219 46388219 G C IRF2BP1 Missense_Mutation p.L272V 0.18 tolerated(0.05) possibly_damaging(0.636) TCGA-EE-A2GD-06 19 47192806 47192806 G A PRKD2 Silent p.F653F 0.29 TCGA-EE-A2GD-06 19 50333462 50333462 C T MED25 Missense_Mutation p.P269L 0.19 tolerated(0.08) possibly_damaging(0.456) TCGA-EE-A2GD-06 19 50475286 50475286 G A VRK3 3'Flank 0.19 TCGA-EE-A2GD-06 19 50840318 50840318 C T NAPSB RNA 0.23 TCGA-EE-A2GD-06 19 51226726 51226726 C T CLEC11A 5'UTR 0.11 TCGA-EE-A2GD-06 19 51273857 51273857 C T GPR32 5'UTR 0.43 TCGA-EE-A2GD-06 19 51742850 51742850 G A CD33 Missense_Mutation p.M334I 0.20 tolerated(0.18) benign(0.001) TCGA-EE-A2GD-06 19 52794264 52794264 G A ZNF766 Missense_Mutation p.G407E 0.12 deleterious(0.01) possibly_damaging(0.691) TCGA-EE-A2GD-06 19 53740413 53740413 C G ZNF677 Missense_Mutation p.A523P 0.18 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A2GD-06 19 53770432 53770432 C T VN1R4 Missense_Mutation p.D163N 0.23 tolerated(0.07) benign(0.251) TCGA-EE-A2GD-06 19 53994798 53994798 C T ZNF813 Missense_Mutation p.P438S 0.24 tolerated(0.05) possibly_damaging(0.453) TCGA-EE-A2GD-06 19 54189747 54189747 G A MIR519C RNA 0.16 TCGA-EE-A2GD-06 19 55086898 55086898 G A LILRA2 Silent p.Q277Q 0.28 TCGA-EE-A2GD-06 19 55286633 55286633 T C KIR2DL1 Silent p.P129P 0.27 TCGA-EE-A2GD-06 19 55449492 55449492 T C NLRP7 Silent p.K683K 0.35 TCGA-EE-A2GD-06 19 57327145 57327145 G A PEG3 Missense_Mutation p.R889C 0.39 tolerated(0.08) benign(0.39) TCGA-EE-A2GD-06 19 57646329 57646329 C T ZIM3 Missense_Mutation p.R459K 0.12 tolerated(1) benign(0) TCGA-EE-A2GD-06 19 57743987 57743987 G A AURKC Missense_Mutation p.R125K 0.20 tolerated(0.6) benign(0.027) TCGA-EE-A2GD-06 19 7808055 7808055 T A CD209 Missense_Mutation p.N362I 0.24 deleterious(0) benign(0.262) TCGA-EE-A2GD-06 19 852888 852888 C T ELANE Missense_Mutation p.A27V 0.15 deleterious(0.05) possibly_damaging(0.855) TCGA-EE-A2GD-06 19 9012861 9012861 G A MUC16 Silent p.F12861F 0.19 TCGA-EE-A2GD-06 19 9063534 9063534 G A MUC16 Missense_Mutation p.S7971F 0.20 unknown(0) TCGA-EE-A2GD-06 1 110256309 110256309 C T GSTM5 Missense_Mutation p.R96C 0.33 deleterious(0.01) possibly_damaging(0.501) TCGA-EE-A2GD-06 1 112309250 112309250 G A DDX20 Missense_Mutation p.R735Q 0.21 tolerated(0.23) benign(0.066) TCGA-EE-A2GD-06 1 112524895 112524895 C T KCND3 Missense_Mutation p.D152N 0.24 tolerated(0.18) benign(0.001) TCGA-EE-A2GD-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.19 deleterious(0.01) benign(0.045) TCGA-EE-A2GD-06 1 115576094 115576094 T C TSHB Silent p.A37A 0.12 TCGA-EE-A2GD-06 1 12711285 12711285 G A AADACL4 Silent p.P104P 0.43 TCGA-EE-A2GD-06 1 12855988 12855988 T C PRAMEF1 Missense_Mutation p.V423A 0.08 tolerated(0.05) benign(0.225) TCGA-EE-A2GD-06 1 13936941 13936941 A T PDPN Missense_Mutation p.E163D 0.23 tolerated(0.22) benign(0.004) TCGA-EE-A2GD-06 1 144882704 144882704 G A PDE4DIP Silent p.L1105L 0.17 TCGA-EE-A2GD-06 1 148591246 148591246 G A NBPF15 Silent p.Q437Q 0.15 TCGA-EE-A2GD-06 1 150788808 150788808 G A ARNT Missense_Mutation p.S626F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GD-06 1 151773751 151773751 C T LINGO4 Missense_Mutation p.R477Q 0.21 tolerated(1) benign(0.001) TCGA-EE-A2GD-06 1 152127768 152127768 C T RPTN Missense_Mutation p.G603R 0.28 tolerated(0.38) benign(0.012) TCGA-EE-A2GD-06 1 152382907 152382907 C T CRNN Silent p.Q217Q 0.29 TCGA-EE-A2GD-06 1 152487900 152487900 C T CRCT1 Missense_Mutation p.S14F 0.18 unknown(0) TCGA-EE-A2GD-06 1 152552270 152552270 G A LCE3D Missense_Mutation p.S48F 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GD-06 1 155002970 155002970 G A DCST2 Silent p.V319V 0.15 TCGA-EE-A2GD-06 1 155630427 155630427 G A YY1AP1 Missense_Mutation p.P563L 0.22 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-EE-A2GD-06 1 155911936 155911936 G A RXFP4 Missense_Mutation p.A146T 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 1 156020298 156020298 A C UBQLN4 Silent p.S175S 0.11 TCGA-EE-A2GD-06 1 157660084 157660084 C T FCRL3 Missense_Mutation p.G551R 0.12 deleterious(0.05) probably_damaging(0.979) TCGA-EE-A2GD-06 1 157801641 157801641 G A CD5L 3'UTR 0.26 TCGA-EE-A2GD-06 1 158585013 158585013 G A SPTA1 Nonsense_Mutation p.Q2261* 0.19 TCGA-EE-A2GD-06 1 158736065 158736065 C T OR6N1 Missense_Mutation p.M136I 0.25 deleterious(0.02) benign(0.134) TCGA-EE-A2GD-06 1 158746909 158746909 C T OR6N2 Missense_Mutation p.E173K 0.29 tolerated(0.62) benign(0.002) TCGA-EE-A2GD-06 1 160854622 160854622 C T ITLN1 Missense_Mutation p.G16R 0.15 tolerated(0.06) possibly_damaging(0.617) TCGA-EE-A2GD-06 1 162740135 162740135 C T DDR2 Missense_Mutation p.S446F 0.26 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GD-06 1 165218718 165218718 C T LMX1A Silent p.Q141Q 0.29 TCGA-EE-A2GD-06 1 17033787 17033787 T C ESPNP RNA 0.28 TCGA-EE-A2GD-06 1 172501872 172501872 G A SUCO 5'Flank 0.14 TCGA-EE-A2GD-06 1 186158759 186158759 C T HMCN1 Missense_Mutation p.R5553W 0.22 probably_damaging(0.982) TCGA-EE-A2GD-06 1 186276717 186276717 G A PRG4 Silent p.K622K 0.42 TCGA-EE-A2GD-06 1 19612407 19612407 C T AKR7A3 Missense_Mutation p.G161D 0.38 deleterious(0.03) benign(0.399) TCGA-EE-A2GD-06 1 197390665 197390665 C T CRB1 Silent p.F569F 0.24 TCGA-EE-A2GD-06 1 200869256 200869256 G A C1orf106 Missense_Mutation p.E69K 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2GD-06 1 201042677 201042677 C T CACNA1S Silent p.K719K 0.25 TCGA-EE-A2GD-06 1 201354881 201354881 C T LAD1 Missense_Mutation p.R360Q 0.21 tolerated(0.21) benign(0.257) TCGA-EE-A2GD-06 1 203734697 203734697 G A LAX1 Missense_Mutation p.D2N 0.25 tolerated(0.2) probably_damaging(0.95) TCGA-EE-A2GD-06 1 205272979 205272979 G A NUAK2 Missense_Mutation p.L496F 0.28 tolerated(0.71) benign(0.001) TCGA-EE-A2GD-06 1 209805940 209805940 G A LAMB3 Silent p.S270S 0.22 TCGA-EE-A2GD-06 1 209956302 209956302 A G C1orf74 Silent p.S226S 0.27 TCGA-EE-A2GD-06 1 222716972 222716972 G A HHIPL2 Missense_Mutation p.S294L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 1 226924549 226924549 G A ITPKB Missense_Mutation p.S204F 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2GD-06 1 227935643 227935643 C T SNAP47 Missense_Mutation p.T114I 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 1 233296051 233296051 C T PCNXL2 Silent p.E1165E 0.20 TCGA-EE-A2GD-06 1 233313571 233313571 G A PCNXL2 Missense_Mutation p.P1084S 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GD-06 1 233802600 233802600 C A KCNK1 Silent p.V205V 0.13 TCGA-EE-A2GD-06 1 24463757 24463757 C T IL22RA1 Silent p.R73R 0.20 TCGA-EE-A2GD-06 1 247654744 247654744 G A OR2W5 RNA 0.37 TCGA-EE-A2GD-06 1 247921004 247921004 C T OR1C1 Silent p.Q235Q 0.22 TCGA-EE-A2GD-06 1 248023996 248023996 A C TRIM58 Missense_Mutation p.K166N 0.23 tolerated(0.06) benign(0.094) TCGA-EE-A2GD-06 1 248058987 248058987 C T OR2W3 Silent p.I33I 0.23 TCGA-EE-A2GD-06 1 248129296 248129296 C T OR2AK2 Silent p.I221I 0.38 TCGA-EE-A2GD-06 1 248262767 248262767 C A OR2L13 Silent p.I30I 0.18 TCGA-EE-A2GD-06 1 248487554 248487554 G A OR2M7 Missense_Mutation p.S106L 0.24 tolerated(0.05) benign(0.03) TCGA-EE-A2GD-06 1 248616126 248616126 T A OR2T2 Missense_Mutation p.S10T 0.15 tolerated(0.3) benign(0.005) TCGA-EE-A2GD-06 1 248845249 248845249 G A OR14I1 Silent p.D119D 0.26 TCGA-EE-A2GD-06 1 32742299 32742299 G C LCK Missense_Mutation p.M292I 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GD-06 1 40702247 40702247 C T RLF Nonsense_Mutation p.Q625* 0.14 TCGA-EE-A2GD-06 1 43166637 43166637 C T YBX1 Missense_Mutation p.P309L 0.30 deleterious(0) benign(0.112) TCGA-EE-A2GD-06 1 43652402 43652402 G A WDR65 Missense_Mutation p.D332N 0.22 deleterious(0.02) benign(0.248) TCGA-EE-A2GD-06 1 47407095 47407095 G A CYP4A11 Missense_Mutation p.S4F 0.22 deleterious_low_confidence(0.03) benign(0.216) TCGA-EE-A2GD-06 1 47512224 47512224 G A CYP4X1 Missense_Mutation p.D387N 0.31 deleterious(0.02) benign(0.288) TCGA-EE-A2GD-06 1 57394988 57394988 C T C8B 3'UTR 0.29 TCGA-EE-A2GD-06 1 57481077 57481077 G A DAB1 Missense_Mutation p.P308L 0.31 deleterious(0) benign(0.378) TCGA-EE-A2GD-06 1 61554110 61554110 C T NFIA Missense_Mutation p.S151F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 1 6605139 6605139 A G NOL9 Silent p.L282L 0.27 TCGA-EE-A2GD-06 1 70587489 70587489 G A LRRC7 Missense_Mutation p.M1511I 0.23 tolerated(1) benign(0.144) TCGA-EE-A2GD-06 1 76198547 76198547 C T ACADM Missense_Mutation p.P80S 0.18 tolerated(0.12) benign(0.032) TCGA-EE-A2GD-06 1 76397802 76397802 C T ASB17 Missense_Mutation p.D59N 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.811) TCGA-EE-A2GD-06 1 77632478 77632478 C T PIGK Missense_Mutation p.R138K 0.32 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GD-06 1 79392696 79392696 G A ELTD1 Nonsense_Mutation p.Q320* 0.11 TCGA-EE-A2GD-06 1 889264 889264 G A NOC2L Silent p.S262S 0.14 TCGA-EE-A2GD-06 1 89613373 89613373 T C GBP7 Silent p.S414S 0.14 TCGA-EE-A2GD-06 1 89614989 89614989 G A GBP7 Nonsense_Mutation p.Q380* 0.20 TCGA-EE-A2GD-06 20 10394190 10394190 C T MKKS 5'UTR 0.22 TCGA-EE-A2GD-06 20 2312688 2312688 G A TGM3 Silent p.G458G 0.18 TCGA-EE-A2GD-06 20 23586408 23586408 C T CST9 Missense_Mutation p.E32K 0.22 tolerated(0.28) benign(0.039) TCGA-EE-A2GD-06 20 25604603 25604603 G A NANP 5'UTR 0.20 TCGA-EE-A2GD-06 20 31368192 31368192 C T DNMT3B Silent p.I21I 0.14 TCGA-EE-A2GD-06 20 34091909 34091909 G A CEP250 Silent p.L1904L 0.27 TCGA-EE-A2GD-06 20 45130982 45130982 C T ZNF334 Silent p.R332R 0.21 TCGA-EE-A2GD-06 20 46365545 46365545 G A SULF2 Missense_Mutation p.T106I 0.32 tolerated(0.13) probably_damaging(1) TCGA-EE-A2GD-06 20 47850207 47850207 C T DDX27 Missense_Mutation p.R443W 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 20 5282949 5282949 G A PROKR2 Missense_Mutation p.R298C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 21 10863035 10863035 G A IGHV1OR21-1 Missense_Mutation p.A111T 0.05 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A2GD-06 21 10933925 10933925 G A TPTE Silent p.F318F 0.08 TCGA-EE-A2GD-06 21 30961298 30961298 C T GRIK1 Missense_Mutation p.G477E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 21 34878379 34878379 G A GART Missense_Mutation p.R829W 0.21 deleterious(0) possibly_damaging(0.843) TCGA-EE-A2GD-06 21 44492159 44492159 G A CBS Missense_Mutation p.P49S 0.23 deleterious(0.02) benign(0.177) TCGA-EE-A2GD-06 21 45537723 45537723 G A PWP2 Missense_Mutation p.D287N 0.27 tolerated(0.14) possibly_damaging(0.71) TCGA-EE-A2GD-06 21 47692684 47692684 G A MCM3AP Silent p.T752T 0.19 TCGA-EE-A2GD-06 22 17264938 17264938 G A XKR3 Silent p.I317I 0.10 TCGA-EE-A2GD-06 22 18979491 18979491 C T DGCR5 RNA 0.23 TCGA-EE-A2GD-06 22 23401850 23401850 C A RTDR1 Missense_Mutation p.E279D 0.16 tolerated(0.38) benign(0.015) TCGA-EE-A2GD-06 22 23438161 23438161 C T GNAZ Silent p.I93I 0.21 TCGA-EE-A2GD-06 22 24515511 24515511 T C CABIN1 Missense_Mutation p.F1493S 0.24 tolerated(0.09) possibly_damaging(0.722) TCGA-EE-A2GD-06 22 24583706 24583706 C T SUSD2 Missense_Mutation p.H687Y 0.17 tolerated(0.61) benign(0.002) TCGA-EE-A2GD-06 22 25294253 25294253 G A SGSM1 Silent p.Q834Q 0.30 TCGA-EE-A2GD-06 22 30209479 30209479 G A ASCC2 Missense_Mutation p.A258V 0.14 deleterious(0.01) benign(0.218) TCGA-EE-A2GD-06 22 31332988 31332988 A T MORC2 Missense_Mutation p.L450Q 0.12 tolerated(0.21) probably_damaging(0.997) TCGA-EE-A2GD-06 22 37098431 37098431 C T CACNG2 Nonsense_Mutation p.W64* 0.21 TCGA-EE-A2GD-06 22 38877506 38877506 T A KDELR3 Missense_Mutation p.L214Q 0.25 deleterious_low_confidence(0) benign(0.25) TCGA-EE-A2GD-06 22 39262274 39262274 C T CBX6 Silent p.K393K 0.16 TCGA-EE-A2GD-06 22 41077399 41077399 C T MCHR1 Missense_Mutation p.P246S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 22 42605785 42605785 G A TCF20 Missense_Mutation p.P1843S 0.22 probably_damaging(0.999) TCGA-EE-A2GD-06 22 44287012 44287012 G A PNPLA5 Missense_Mutation p.S119L 0.30 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2GD-06 2 102956649 102956649 G A IL1RL1 Missense_Mutation p.V122I 0.20 tolerated(0.46) benign(0.027) TCGA-EE-A2GD-06 2 107084678 107084678 G A RGPD3 Nonsense_Mutation p.R23* 0.38 TCGA-EE-A2GD-06 2 107446612 107446612 G A ST6GAL2 Missense_Mutation p.H410Y 0.35 probably_damaging(1) TCGA-EE-A2GD-06 2 109379918 109379918 T C RANBP2 Silent p.L975L 0.24 TCGA-EE-A2GD-06 2 111399362 111399362 G A BUB1 Missense_Mutation p.P828S 0.26 tolerated(0.07) benign(0.03) TCGA-EE-A2GD-06 2 113060816 113060816 C T ZC3H6 Missense_Mutation p.P75L 0.10 deleterious(0) unknown(0) TCGA-EE-A2GD-06 2 116257132 116257132 G A DPP10 Silent p.L110L 0.16 TCGA-EE-A2GD-06 2 120236446 120236446 G A SCTR Missense_Mutation p.P81L 0.13 tolerated(0.46) benign(0.002) TCGA-EE-A2GD-06 2 120236447 120236447 G A SCTR Missense_Mutation p.P81S 0.14 tolerated(0.13) benign(0.007) TCGA-EE-A2GD-06 2 121732575 121732575 G T GLI2 Missense_Mutation p.D420Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 2 125192239 125192239 G A CNTNAP5 Silent p.G236G 0.32 TCGA-EE-A2GD-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.16 TCGA-EE-A2GD-06 2 133175151 133175151 C T GPR39 Missense_Mutation p.P179L 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 2 135744719 135744719 G A MAP3K19 Missense_Mutation p.P575S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 2 136567447 136567447 C T LCT Missense_Mutation p.D824N 0.16 tolerated(0.2) benign(0.187) TCGA-EE-A2GD-06 2 137814542 137814542 C T THSD7B Missense_Mutation p.S231F 0.17 deleterious(0.05) probably_damaging(0.965) TCGA-EE-A2GD-06 2 138425405 138425405 C T THSD7B Silent p.F1574F 0.40 TCGA-EE-A2GD-06 2 140990796 140990796 G A LRP1B Missense_Mutation p.P4587S 0.19 possibly_damaging(0.641) TCGA-EE-A2GD-06 2 141526857 141526857 C T LRP1B Missense_Mutation p.E1895K 0.28 benign(0.292) TCGA-EE-A2GD-06 2 155555249 155555249 C T KCNJ3 5'UTR 0.19 TCGA-EE-A2GD-06 2 160755202 160755202 G A LY75-CD302 Missense_Mutation p.H155Y 0.19 deleterious(0.01) possibly_damaging(0.888) TCGA-EE-A2GD-06 2 162761303 162761303 C T SLC4A10 Silent p.L545L 0.18 TCGA-EE-A2GD-06 2 167160792 167160792 G A SCN9A Missense_Mutation p.T215I 0.17 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GD-06 2 168108395 168108395 C T XIRP2 Missense_Mutation p.T3498I 0.25 benign(0.046) TCGA-EE-A2GD-06 2 171256809 171256809 G A MYO3B Missense_Mutation p.E635K 0.14 tolerated(0.35) benign(0.043) TCGA-EE-A2GD-06 2 175436728 175436728 G A WIPF1 Missense_Mutation p.P269S 0.21 tolerated_low_confidence(0.16) probably_damaging(0.997) TCGA-EE-A2GD-06 2 176948384 176948384 C T EVX2 Missense_Mutation p.E41K 0.31 deleterious(0) probably_damaging(0.934) TCGA-EE-A2GD-06 2 177036546 177036546 C T HOXD3 Silent p.A281A 0.21 TCGA-EE-A2GD-06 2 179641297 179641297 C T TTN Missense_Mutation p.G1765D 0.26 TCGA-EE-A2GD-06 2 186673140 186673140 T A FSIP2 Missense_Mutation p.D6458E 0.18 benign(0.381) TCGA-EE-A2GD-06 2 201721506 201721506 G A CLK1 Missense_Mutation p.P361L 0.23 tolerated(0.11) possibly_damaging(0.484) TCGA-EE-A2GD-06 2 202074178 202074178 C T CASP10 Silent p.F436F 0.23 TCGA-EE-A2GD-06 2 204003378 204003378 G T NBEAL1 Silent p.L1556L 0.20 TCGA-EE-A2GD-06 2 206869967 206869967 G A INO80D Missense_Mutation p.R737C 0.11 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-EE-A2GD-06 2 21230175 21230175 G A APOB Missense_Mutation p.P3189S 0.22 probably_damaging(0.995) TCGA-EE-A2GD-06 2 21245744 21245744 G A APOB Silent p.I925I 0.23 TCGA-EE-A2GD-06 2 219000042 219000042 C T CXCR2 Missense_Mutation p.S173F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GD-06 2 219000288 219000288 C T CXCR2 Missense_Mutation p.A255V 0.24 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A2GD-06 2 219319607 219319607 C A USP37 3'UTR 0.26 TCGA-EE-A2GD-06 2 219508926 219508926 G A ZNF142 Silent p.S771S 0.16 TCGA-EE-A2GD-06 2 219528774 219528774 C T RNF25 Missense_Mutation p.G429D 0.20 deleterious(0) possibly_damaging(0.662) TCGA-EE-A2GD-06 2 219695555 219695555 C T PRKAG3 Missense_Mutation p.R48K 0.28 tolerated_low_confidence(0.1) benign(0.137) TCGA-EE-A2GD-06 2 223389666 223389666 C T SGPP2 Missense_Mutation p.P188S 0.19 deleterious(0.03) possibly_damaging(0.838) TCGA-EE-A2GD-06 2 224462447 224462447 G A SCG2 Silent p.I518I 0.22 TCGA-EE-A2GD-06 2 225367750 225367750 T A CUL3 Missense_Mutation p.M473L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 2 225729274 225729274 T A DOCK10 Missense_Mutation p.N533I 0.20 tolerated(0.18) benign(0.104) TCGA-EE-A2GD-06 2 225739407 225739407 G A DOCK10 Silent p.N331N 0.12 TCGA-EE-A2GD-06 2 225751242 225751242 T C DOCK10 Silent p.E141E 0.30 TCGA-EE-A2GD-06 2 228882871 228882871 T C SPHKAP Missense_Mutation p.N900S 0.18 tolerated(0.82) benign(0.02) TCGA-EE-A2GD-06 2 233344822 233344822 T C ECEL1 3'UTR 0.17 TCGA-EE-A2GD-06 2 238999947 238999947 C T SCLY Intron 0.15 TCGA-EE-A2GD-06 2 26174711 26174711 G A KIF3C Silent p.F651F 0.10 TCGA-EE-A2GD-06 2 27360924 27360924 G A C2orf53 Missense_Mutation p.P92S 0.18 tolerated(0.13) possibly_damaging(0.457) TCGA-EE-A2GD-06 2 31569643 31569643 C T XDH Missense_Mutation p.E1115K 0.16 tolerated(0.43) benign(0.026) TCGA-EE-A2GD-06 2 3726094 3726094 G A ALLC Missense_Mutation p.E41K 0.15 deleterious(0.03) possibly_damaging(0.457) TCGA-EE-A2GD-06 2 38179163 38179163 C T RMDN2 Missense_Mutation p.P269S 0.13 tolerated(0.27) possibly_damaging(0.563) TCGA-EE-A2GD-06 2 44053607 44053607 G A ABCG5 Nonsense_Mutation p.Q230* 0.24 TCGA-EE-A2GD-06 2 54482566 54482566 C T TSPYL6 Silent p.R241R 0.15 TCGA-EE-A2GD-06 2 61484347 61484347 G A USP34 Missense_Mutation p.P1995S 0.20 tolerated(0.14) benign(0.222) TCGA-EE-A2GD-06 2 74598270 74598270 G A DCTN1 Silent p.L227L 0.18 TCGA-EE-A2GD-06 2 74598271 74598271 G A DCTN1 Silent p.D226D 0.18 TCGA-EE-A2GD-06 2 95815990 95815990 G A ZNF514 Silent p.S80S 0.37 TCGA-EE-A2GD-06 2 96809623 96809623 G A DUSP2 Missense_Mutation p.S295F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 2 96852638 96852638 G A STARD7 Silent p.L315L 0.24 TCGA-EE-A2GD-06 3 11301561 11301561 C T HRH1 Missense_Mutation p.P280S 0.13 tolerated(0.24) benign(0.003) TCGA-EE-A2GD-06 3 11301562 11301562 C T HRH1 Missense_Mutation p.P280L 0.13 tolerated(0.1) benign(0.004) TCGA-EE-A2GD-06 3 115394989 115394989 G A GAP43 Missense_Mutation p.E90K 0.26 deleterious(0) benign(0.257) TCGA-EE-A2GD-06 3 121838366 121838366 T G CD86 Missense_Mutation p.S325R 0.43 deleterious(0.01) unknown(0) TCGA-EE-A2GD-06 3 122353928 122353928 A T PARP15 Missense_Mutation p.D545V 0.14 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2GD-06 3 12458497 12458497 G A PPARG Missense_Mutation p.G372S 0.20 tolerated(0.05) probably_damaging(0.974) TCGA-EE-A2GD-06 3 130947488 130947488 A T NEK11 Missense_Mutation p.I506F 0.21 tolerated(0.19) benign(0.035) TCGA-EE-A2GD-06 3 148925395 148925395 C T CP Missense_Mutation p.G264E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 3 150128647 150128647 C T TSC22D2 Missense_Mutation p.P504S 0.26 tolerated(0.91) possibly_damaging(0.641) TCGA-EE-A2GD-06 3 150128648 150128648 C T TSC22D2 Missense_Mutation p.P504L 0.26 tolerated(0.09) possibly_damaging(0.713) TCGA-EE-A2GD-06 3 164907759 164907759 G A SLITRK3 Missense_Mutation p.S287F 0.23 tolerated(0.24) possibly_damaging(0.541) TCGA-EE-A2GD-06 3 182733275 182733275 G A MCCC1 Missense_Mutation p.P710L 0.19 tolerated(0.37) benign(0.013) TCGA-EE-A2GD-06 3 182937681 182937681 A C MCF2L2 Missense_Mutation p.M778R 0.09 deleterious(0.02) benign(0.005) TCGA-EE-A2GD-06 3 185375161 185375161 G A IGF2BP2 Silent p.F433F 0.15 TCGA-EE-A2GD-06 3 188590500 188590500 C T LPP Silent p.V553V 0.23 TCGA-EE-A2GD-06 3 189597969 189597969 G A TP63 Intron 0.30 TCGA-EE-A2GD-06 3 192517384 192517384 G A MB21D2 Silent p.L89L 0.17 TCGA-EE-A2GD-06 3 38938508 38938508 G A SCN11A Missense_Mutation p.S744L 0.21 tolerated(0.3) benign(0.01) TCGA-EE-A2GD-06 3 38950535 38950535 C T SCN11A Missense_Mutation p.E418K 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GD-06 3 39228015 39228015 G A XIRP1 Silent p.P974P 0.17 TCGA-EE-A2GD-06 3 42243952 42243952 G C TRAK1 Silent p.P484P 0.10 TCGA-EE-A2GD-06 3 42572390 42572390 G A VIPR1 Silent p.R252R 0.19 TCGA-EE-A2GD-06 3 42906654 42906654 C T ACKR2 Silent p.L220L 0.19 TCGA-EE-A2GD-06 3 43381975 43381975 C T SNRK Nonsense_Mutation p.R310* 0.22 TCGA-EE-A2GD-06 3 46784534 46784534 C T PRSS45 Missense_Mutation p.E108K 0.23 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GD-06 3 48638438 48638438 G A UQCRC1 Silent p.G312G 0.35 TCGA-EE-A2GD-06 3 49005999 49005999 C T ARIH2 Missense_Mutation p.R191C 0.18 tolerated(0.09) benign(0.226) TCGA-EE-A2GD-06 3 51274978 51274978 G A DOCK3 Missense_Mutation p.D687N 0.27 tolerated(0.09) probably_damaging(0.962) TCGA-EE-A2GD-06 3 51696603 51696603 T A RAD54L2 Missense_Mutation p.S1191T 0.10 tolerated_low_confidence(0.26) benign(0.003) TCGA-EE-A2GD-06 3 51751692 51751692 G A GRM2 Missense_Mutation p.G802S 0.31 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A2GD-06 3 51751693 51751693 G A GRM2 Missense_Mutation p.G802D 0.30 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A2GD-06 3 51994051 51994051 G A PCBP4 Intron 0.33 TCGA-EE-A2GD-06 3 56114943 56114943 C T ERC2 Missense_Mutation p.D515N 0.14 deleterious(0.02) possibly_damaging(0.593) TCGA-EE-A2GD-06 3 58728180 58728180 G A C3orf67 3'UTR 0.14 TCGA-EE-A2GD-06 3 58728181 58728181 G A C3orf67 3'UTR 0.14 TCGA-EE-A2GD-06 3 64132797 64132797 T C PRICKLE2 Missense_Mutation p.M457V 0.22 tolerated(0.44) benign(0.013) TCGA-EE-A2GD-06 3 77645877 77645877 G A ROBO2 Missense_Mutation p.E960K 0.24 tolerated(0.4) benign(0.001) TCGA-EE-A2GD-06 3 97806033 97806033 G A OR5AC2 Missense_Mutation p.G6E 0.20 tolerated(1) benign(0.001) TCGA-EE-A2GD-06 3 98002107 98002107 G A OR5H2 Missense_Mutation p.D126N 0.15 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GD-06 3 98189118 98189118 G A OR5K1 Missense_Mutation p.G233E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 3 9867621 9867621 C T TTLL3 Missense_Mutation p.S431F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 3 9867622 9867622 C T TTLL3 Silent p.S431S 0.14 TCGA-EE-A2GD-06 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.20 probably_damaging(1) TCGA-EE-A2GD-06 4 126370209 126370209 G A FAT4 Missense_Mutation p.E2680K 0.09 probably_damaging(0.999) TCGA-EE-A2GD-06 4 141555209 141555209 G A TBC1D9 Missense_Mutation p.P880L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 4 146062615 146062615 G A OTUD4 Missense_Mutation p.P602S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 4 149002580 149002580 G T NR3C2 Missense_Mutation p.P957H 0.35 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GD-06 4 157693945 157693945 A G PDGFC Missense_Mutation p.L199P 0.19 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A2GD-06 4 158057765 158057765 G A GLRB Missense_Mutation p.E148K 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GD-06 4 170028035 170028035 G A SH3RF1 Missense_Mutation p.P821S 0.12 tolerated(0.32) benign(0.001) TCGA-EE-A2GD-06 4 175898164 175898164 G A ADAM29 Silent p.K496K 0.15 TCGA-EE-A2GD-06 4 177605048 177605048 A C VEGFC 3'UTR 0.26 TCGA-EE-A2GD-06 4 183812630 183812630 C T DCTD Silent p.R164R 0.18 TCGA-EE-A2GD-06 4 184182164 184182164 C T WWC2 Missense_Mutation p.S463F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 4 187157996 187157996 G A KLKB1 Silent p.K130K 0.20 TCGA-EE-A2GD-06 4 187201430 187201430 G A F11 Missense_Mutation p.D307N 0.16 tolerated(1) benign(0.055) TCGA-EE-A2GD-06 4 188924380 188924380 C T ZFP42 Missense_Mutation p.S140L 0.20 tolerated(0.06) benign(0.006) TCGA-EE-A2GD-06 4 1902596 1902596 C T WHSC1 Missense_Mutation p.P72L 0.23 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2GD-06 4 20620555 20620555 G A SLIT2 Missense_Mutation p.E1505K 0.29 tolerated(0.48) benign(0.062) TCGA-EE-A2GD-06 4 2702142 2702142 C T FAM193A Missense_Mutation p.P1124S 0.18 tolerated(0.13) benign(0.053) TCGA-EE-A2GD-06 4 41621473 41621473 C T LIMCH1 Intron 0.11 TCGA-EE-A2GD-06 4 52928383 52928383 C T SPATA18 Intron 0.15 TCGA-EE-A2GD-06 4 69107502 69107502 C T TMPRSS11B Missense_Mutation p.R10K 0.10 tolerated(0.27) benign(0.112) TCGA-EE-A2GD-06 4 69512743 69512743 C T UGT2B15 3'UTR 0.24 TCGA-EE-A2GD-06 4 69512954 69512954 G A UGT2B15 Silent p.I487I 0.16 TCGA-EE-A2GD-06 4 69535692 69535692 C T UGT2B15 Missense_Mutation p.M215I 0.24 tolerated(0.13) benign(0.072) TCGA-EE-A2GD-06 4 70359506 70359506 G A UGT2B4 Nonsense_Mutation p.R259* 0.26 TCGA-EE-A2GD-06 4 70361251 70361251 G A UGT2B4 Missense_Mutation p.S110L 0.33 tolerated(0.71) benign(0.019) TCGA-EE-A2GD-06 4 70504997 70504997 C T UGT2A2 Missense_Mutation p.G121E 0.19 tolerated(0.8) benign(0.098) TCGA-EE-A2GD-06 4 76489650 76489650 G A C4orf26 Silent p.E146E 0.12 TCGA-EE-A2GD-06 4 77003159 77003159 C T ART3 Silent p.I84I 0.23 TCGA-EE-A2GD-06 4 8588793 8588793 C T GPR78 Silent p.L265L 0.47 TCGA-EE-A2GD-06 4 998111 998111 C T IDUA Missense_Mutation p.P631L 0.11 tolerated(0.54) probably_damaging(0.999) TCGA-EE-A2GD-06 5 11346714 11346714 G A CTNND2 Silent p.S466S 0.22 TCGA-EE-A2GD-06 5 131728290 131728290 C T SLC22A5 Missense_Mutation p.P478L 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 5 132232044 132232044 C - AFF4 Frame_Shift_Del p.V760Ffs*82 0.14 TCGA-EE-A2GD-06 5 135396580 135396580 A C TGFBI Missense_Mutation p.T621P 0.33 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2GD-06 5 137593625 137593625 A C GFRA3 Missense_Mutation p.L163R 0.17 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GD-06 5 139838938 139838938 C T ANKHD1 Missense_Mutation p.S557F 0.11 unknown(0) TCGA-EE-A2GD-06 5 140167787 140167787 G A PCDHA1 Missense_Mutation p.D638N 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-EE-A2GD-06 5 140516153 140516153 G A PCDHB5 Silent p.R379R 0.19 TCGA-EE-A2GD-06 5 140558382 140558382 G A PCDHB8 Missense_Mutation p.S256N 0.18 deleterious_low_confidence(0.05) benign(0.038) TCGA-EE-A2GD-06 5 140857265 140857265 G A PCDHGC3 Missense_Mutation p.E528K 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 5 141243308 141243308 G A PCDH1 Missense_Mutation p.A863V 0.13 tolerated(0.32) benign(0.039) TCGA-EE-A2GD-06 5 142601967 142601967 G A ARHGAP26 Missense_Mutation p.G801R 0.12 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GD-06 5 154092534 154092534 G A LARP1 Missense_Mutation p.E17K 0.12 possibly_damaging(0.486) TCGA-EE-A2GD-06 5 156479611 156479611 C T HAVCR1 Missense_Mutation p.R145Q 0.12 tolerated(0.6) unknown(0) TCGA-EE-A2GD-06 5 156589974 156589974 C T FAM71B Silent p.K434K 0.10 TCGA-EE-A2GD-06 5 157065541 157065541 G A SOX30 Missense_Mutation p.S526F 0.17 deleterious(0.02) benign(0.22) TCGA-EE-A2GD-06 5 161292770 161292770 C T GABRA1 Silent p.F77F 0.11 TCGA-EE-A2GD-06 5 177649486 177649486 C T PHYKPL Missense_Mutation p.G266E 0.10 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A2GD-06 5 179743970 179743970 G A GFPT2 Silent p.T349T 0.11 TCGA-EE-A2GD-06 5 32101303 32101303 G A PDZD2 Missense_Mutation p.V2771M 0.21 tolerated(0.47) benign(0.071) TCGA-EE-A2GD-06 5 32407028 32407028 C T ZFR Missense_Mutation p.A295T 0.28 tolerated(0.42) unknown(0) TCGA-EE-A2GD-06 5 35010122 35010122 C T AGXT2 Missense_Mutation p.E441K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 5 35035371 35035371 C T AGXT2 Silent p.L179L 0.11 TCGA-EE-A2GD-06 5 35065841 35065841 G A PRLR Missense_Mutation p.H407Y 0.25 tolerated(0.54) benign(0.01) TCGA-EE-A2GD-06 5 38412625 38412625 G A EGFLAM Missense_Mutation p.V457I 0.16 tolerated(0.24) benign(0.012) TCGA-EE-A2GD-06 5 41015542 41015542 C T MROH2B Missense_Mutation p.E975K 0.27 tolerated(0.23) benign(0.197) TCGA-EE-A2GD-06 5 41159253 41159253 C T C6 Missense_Mutation p.R596Q 0.11 tolerated(0.46) benign(0.002) TCGA-EE-A2GD-06 5 45267205 45267205 C T HCN1 Missense_Mutation p.R590Q 0.27 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GD-06 5 50680437 50680437 A T ISL1 Missense_Mutation p.R31W 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 5 52781517 52781517 G A FST Intron 0.11 TCGA-EE-A2GD-06 5 58511677 58511677 G A PDE4D Silent p.F191F 0.11 TCGA-EE-A2GD-06 5 76128859 76128859 T A F2RL1 Missense_Mutation p.Y143N 0.21 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GD-06 5 89814556 89814556 T C LYSMD3 3'UTR 0.25 TCGA-EE-A2GD-06 5 90040865 90040865 C T GPR98 Missense_Mutation p.H3518Y 0.11 benign(0.403) TCGA-EE-A2GD-06 6 100368815 100368815 C T MCHR2 3'UTR 0.35 TCGA-EE-A2GD-06 6 128505719 128505719 G A PTPRK Silent p.T340T 0.20 TCGA-EE-A2GD-06 6 133703567 133703567 C T EYA4 Missense_Mutation p.S24F 0.25 deleterious_low_confidence(0.04) benign(0.218) TCGA-EE-A2GD-06 6 136599645 136599645 G A BCLAF1 Missense_Mutation p.S125F 0.09 deleterious_low_confidence(0) benign(0.341) TCGA-EE-A2GD-06 6 151670948 151670948 G A AKAP12 Silent p.E474E 0.27 TCGA-EE-A2GD-06 6 152674513 152674513 G A SYNE1 Missense_Mutation p.S3713F 0.31 possibly_damaging(0.736) TCGA-EE-A2GD-06 6 152841601 152841601 C T SYNE1 Missense_Mutation p.G101E 0.25 probably_damaging(0.914) TCGA-EE-A2GD-06 6 155153768 155153768 C T SCAF8 Missense_Mutation p.P1019S 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GD-06 6 161152095 161152095 G A PLG Missense_Mutation p.M423I 0.24 tolerated(0.18) benign(0.216) TCGA-EE-A2GD-06 6 28483506 28483506 G A GPX6 Silent p.F5F 0.12 TCGA-EE-A2GD-06 6 29012544 29012544 T G OR2W1 Missense_Mutation p.N137H 0.14 tolerated(1) possibly_damaging(0.653) TCGA-EE-A2GD-06 6 29012592 29012592 C T OR2W1 Missense_Mutation p.D121N 0.39 deleterious(0) possibly_damaging(0.728) TCGA-EE-A2GD-06 6 29641432 29641432 G A ZFP57 Silent p.P152P 0.33 TCGA-EE-A2GD-06 6 31940487 31940487 C A STK19 Missense_Mutation p.Q174K 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GD-06 6 32037989 32037989 C T TNXB Silent p.L1731L 0.16 TCGA-EE-A2GD-06 6 32172032 32172032 C T NOTCH4 Silent p.G1000G 0.30 TCGA-EE-A2GD-06 6 33048570 33048570 C T HLA-DPB1 Silent p.F74F 0.09 TCGA-EE-A2GD-06 6 35762990 35762990 G A CLPS Missense_Mutation p.T91I 0.27 deleterious(0.01) possibly_damaging(0.832) TCGA-EE-A2GD-06 6 38950122 38950122 G A DNAH8 Missense_Mutation p.E4062K 0.20 probably_damaging(1) TCGA-EE-A2GD-06 6 39159374 39159374 C T KCNK5 Silent p.K264K 0.13 TCGA-EE-A2GD-06 6 39159415 39159415 C T KCNK5 Missense_Mutation p.E251K 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GD-06 6 43155488 43155488 C T CUL9 Missense_Mutation p.S540F 0.32 deleterious(0) benign(0.171) TCGA-EE-A2GD-06 6 44310878 44310878 C T SPATS1 Missense_Mutation p.L16F 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.893) TCGA-EE-A2GD-06 6 46874426 46874426 C T GPR116 Nonsense_Mutation p.W25* 0.29 TCGA-EE-A2GD-06 6 52052501 52052501 G A IL17A Missense_Mutation p.R43Q 0.22 tolerated(1) benign(0.001) TCGA-EE-A2GD-06 6 52052502 52052502 G A IL17A Silent p.R43R 0.22 TCGA-EE-A2GD-06 6 52103617 52103617 C T IL17F Missense_Mutation p.M55I 0.42 tolerated(0.09) benign(0.001) TCGA-EE-A2GD-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.17 tolerated(0.45) benign(0.018) TCGA-EE-A2GD-06 6 55739532 55739532 C T BMP5 Silent p.R44R 0.14 TCGA-EE-A2GD-06 6 56919200 56919200 G A KIAA1586 Missense_Mutation p.E635K 0.11 deleterious(0.02) benign(0.103) TCGA-EE-A2GD-06 6 73000453 73000453 G A RIMS1 Missense_Mutation p.G1209E 0.21 tolerated(1) possibly_damaging(0.687) TCGA-EE-A2GD-06 6 73751747 73751747 G A KCNQ5 Missense_Mutation p.G193E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 6 7570790 7570790 C T DSP Silent p.I565I 0.18 TCGA-EE-A2GD-06 6 85472362 85472362 G A TBX18 Silent p.L133L 0.21 TCGA-EE-A2GD-06 7 100184216 100184216 C T FBXO24 5'Flank 0.29 TCGA-EE-A2GD-06 7 100320292 100320292 G A EPO Silent p.G84G 0.19 TCGA-EE-A2GD-06 7 100350500 100350500 G A ZAN Silent p.T924T 0.23 TCGA-EE-A2GD-06 7 100552193 100552193 C T MUC3A Missense_Mutation p.S315F 0.06 deleterious(0.04) probably_damaging(0.969) TCGA-EE-A2GD-06 7 102579963 102579963 G A LRRC17 Missense_Mutation p.E287K 0.20 tolerated(0.07) benign(0.165) TCGA-EE-A2GD-06 7 102665596 102665596 G A FBXL13 Missense_Mutation p.P137S 0.22 tolerated(0.81) benign(0.002) TCGA-EE-A2GD-06 7 11452340 11452340 C T THSD7A Missense_Mutation p.E1209K 0.18 deleterious(0.02) benign(0.247) TCGA-EE-A2GD-06 7 128801522 128801522 G A TSPAN33 Silent p.V35V 0.15 TCGA-EE-A2GD-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.23 TCGA-EE-A2GD-06 7 138845778 138845778 G A TTC26 Intron 0.16 TCGA-EE-A2GD-06 7 141673292 141673292 G A TAS2R38 Silent p.F66F 0.27 TCGA-EE-A2GD-06 7 142247248 142247248 C T TRBV7-3 Missense_Mutation p.G70S 0.18 TCGA-EE-A2GD-06 7 142612534 142612534 A G TRPV5 Missense_Mutation p.V410A 0.22 tolerated(0.07) possibly_damaging(0.803) TCGA-EE-A2GD-06 7 143140935 143140935 C T TAS2R60 Silent p.F130F 0.28 TCGA-EE-A2GD-06 7 143792314 143792314 G A OR2A12 Silent p.L38L 0.19 TCGA-EE-A2GD-06 7 146829553 146829553 C T CNTNAP2 Missense_Mutation p.H434Y 0.27 tolerated(0.87) benign(0.001) TCGA-EE-A2GD-06 7 148496393 148496393 G A CUL1 Missense_Mutation p.M721I 0.21 deleterious(0.04) possibly_damaging(0.573) TCGA-EE-A2GD-06 7 1527398 1527398 G A INTS1 Silent p.P838P 0.33 TCGA-EE-A2GD-06 7 1527399 1527399 G A INTS1 Missense_Mutation p.P838L 0.33 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GD-06 7 154790397 154790397 C T PAXIP1 Missense_Mutation p.G60E 0.18 tolerated(0.25) benign(0.373) TCGA-EE-A2GD-06 7 158448105 158448105 G A NCAPG2 Missense_Mutation p.R811C 0.24 tolerated(0.06) benign(0.004) TCGA-EE-A2GD-06 7 20421376 20421376 T C ITGB8 Silent p.A276A 0.34 TCGA-EE-A2GD-06 7 20421377 20421377 A T ITGB8 Nonsense_Mutation p.K277* 0.36 TCGA-EE-A2GD-06 7 27669065 27669065 G A HIBADH Missense_Mutation p.P137S 0.20 deleterious(0.03) possibly_damaging(0.685) TCGA-EE-A2GD-06 7 2963913 2963913 C T CARD11 Missense_Mutation p.D632N 0.14 tolerated(0.06) possibly_damaging(0.631) TCGA-EE-A2GD-06 7 34118566 34118566 A T BMPER Missense_Mutation p.K392N 0.17 deleterious(0.01) benign(0.331) TCGA-EE-A2GD-06 7 36338663 36338663 G A EEPD1 Missense_Mutation p.D520N 0.15 tolerated(0.17) possibly_damaging(0.679) TCGA-EE-A2GD-06 7 37382330 37382330 G A ELMO1 5'UTR 0.10 TCGA-EE-A2GD-06 7 44151903 44151903 C T AEBP1 Missense_Mutation p.L734F 0.20 deleterious(0.04) benign(0.241) TCGA-EE-A2GD-06 7 4780522 4780522 A G FOXK1 Missense_Mutation p.Y205C 0.20 tolerated(0.14) benign(0.009) TCGA-EE-A2GD-06 7 48431653 48431653 C T ABCA13 Silent p.L3930L 0.19 TCGA-EE-A2GD-06 7 6210176 6210176 G A CYTH3 Silent p.L271L 0.27 TCGA-EE-A2GD-06 7 78256458 78256458 G A MAGI2 Silent p.L172L 0.17 TCGA-EE-A2GD-06 7 82579080 82579080 G A PCLO Silent p.S3608S 0.23 TCGA-EE-A2GD-06 7 83095806 83095806 G A SEMA3E Missense_Mutation p.H150Y 0.32 tolerated(0.16) benign(0.046) TCGA-EE-A2GD-06 7 94037187 94037187 G A COL1A2 Missense_Mutation p.G208E 0.17 unknown(0) TCGA-EE-A2GD-06 8 10468325 10468325 C T RP1L1 Missense_Mutation p.G1095S 0.27 benign(0.011) TCGA-EE-A2GD-06 8 110131324 110131324 G A TRHR Nonsense_Mutation p.W279* 0.30 TCGA-EE-A2GD-06 8 110131514 110131514 G A TRHR Missense_Mutation p.E343K 0.28 tolerated(0.25) benign(0.005) TCGA-EE-A2GD-06 8 110587741 110587741 G A SYBU Silent p.T462T 0.09 TCGA-EE-A2GD-06 8 110980336 110980336 C T KCNV1 Missense_Mutation p.G495E 0.21 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A2GD-06 8 110980682 110980682 G A KCNV1 Missense_Mutation p.P380S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 8 116599243 116599243 G A TRPS1 Silent p.S895S 0.24 TCGA-EE-A2GD-06 8 126445567 126445567 C T TRIB1 Silent p.P123P 0.15 TCGA-EE-A2GD-06 8 133023050 133023050 C T EFR3A Missense_Mutation p.P792S 0.23 tolerated(0.11) probably_damaging(0.95) TCGA-EE-A2GD-06 8 142200413 142200413 G A DENND3 Missense_Mutation p.M1012I 0.24 deleterious(0.01) benign(0.016) TCGA-EE-A2GD-06 8 142367729 142367729 C T GPR20 Missense_Mutation p.D99N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GD-06 8 143846092 143846092 G A LYNX1 Silent p.I109I 0.19 TCGA-EE-A2GD-06 8 24256386 24256386 G A ADAMDEC1 Splice_Site p.X255_splice 0.14 TCGA-EE-A2GD-06 8 38189091 38189091 T A WHSC1L1 Missense_Mutation p.Y308F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GD-06 8 39581281 39581281 G A ADAM18 Missense_Mutation p.E678K 0.21 tolerated(1) benign(0.001) TCGA-EE-A2GD-06 8 48625418 48625418 C T SPIDR Silent p.D724D 0.25 TCGA-EE-A2GD-06 8 53073946 53073946 G A ST18 Missense_Mutation p.P528L 0.17 deleterious(0.05) benign(0.12) TCGA-EE-A2GD-06 8 55539794 55539794 C T RP1 Missense_Mutation p.H1118Y 0.13 deleterious(0) benign(0.021) TCGA-EE-A2GD-06 8 55540151 55540151 G A RP1 Missense_Mutation p.G1237R 0.21 tolerated(0.74) benign(0.034) TCGA-EE-A2GD-06 8 6794348 6794348 C T DEFA4 Missense_Mutation p.R25K 0.24 deleterious(0.04) benign(0.426) TCGA-EE-A2GD-06 8 68972915 68972915 G A PREX2 Missense_Mutation p.E414K 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GD-06 8 7308672 7308672 C T SPAG11B Intron 0.18 TCGA-EE-A2GD-06 8 73850111 73850111 G A KCNB2 Missense_Mutation p.G841R 0.15 tolerated_low_confidence(0.25) benign(0.001) TCGA-EE-A2GD-06 8 76476297 76476297 C T HNF4G Missense_Mutation p.S435L 0.27 tolerated_low_confidence(0.06) benign(0.027) TCGA-EE-A2GD-06 8 86041442 86041442 C T LRRCC1 Missense_Mutation p.S485F 0.14 deleterious(0.02) benign(0.308) TCGA-EE-A2GD-06 8 88884989 88884989 C T DCAF4L2 3'UTR 0.19 TCGA-EE-A2GD-06 9 100983148 100983148 G A TBC1D2 Silent p.F447F 0.29 TCGA-EE-A2GD-06 9 116046646 116046646 C T PRPF4 Silent p.S243S 0.19 TCGA-EE-A2GD-06 9 116093332 116093332 G A WDR31 Missense_Mutation p.H61Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GD-06 9 119115031 119115031 C T PAPPA Silent p.F1337F 0.25 TCGA-EE-A2GD-06 9 125289540 125289540 G A OR1N1 Silent p.F11F 0.20 TCGA-EE-A2GD-06 9 126144351 126144351 G A DENND1A Missense_Mutation p.T797I 0.27 tolerated_low_confidence(0.12) benign(0.002) TCGA-EE-A2GD-06 9 127915952 127915952 G A PPP6C Nonsense_Mutation p.R214* 0.30 TCGA-EE-A2GD-06 9 137694743 137694743 G A COL5A1 Missense_Mutation p.G1006R 0.30 unknown(0) TCGA-EE-A2GD-06 9 137734172 137734172 G A COL5A1 3'UTR 0.38 TCGA-EE-A2GD-06 9 137779292 137779292 C T FCN2 3'UTR 0.36 TCGA-EE-A2GD-06 9 21409424 21409424 G A IFNA8 Missense_Mutation p.M83I 0.30 tolerated(0.07) benign(0.041) TCGA-EE-A2GD-06 9 32633616 32633616 T C TAF1L Silent p.S654S 0.16 TCGA-EE-A2GD-06 9 32633900 32633900 G A TAF1L Missense_Mutation p.L560F 0.30 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2GD-06 9 39103859 39103859 G A CNTNAP3 Silent p.F806F 0.17 TCGA-EE-A2GD-06 9 39109233 39109233 C T CNTNAP3 Silent p.Q763Q 0.27 TCGA-EE-A2GD-06 9 72067068 72067068 G A APBA1 Silent p.I646I 0.25 TCGA-EE-A2GD-06 9 95069259 95069259 T G NOL8 Missense_Mutation p.K912Q 0.24 deleterious(0) probably_damaging(0.95) TCGA-EE-A2GD-06 9 95768347 95768347 C T FGD3 Missense_Mutation p.A241V 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 X 101615544 101615544 T G NXF2B Missense_Mutation p.E620A 0.17 tolerated(0.08) probably_damaging(0.954) TCGA-EE-A2GD-06 X 106172174 106172174 G A CLDN2 3'UTR 0.21 TCGA-EE-A2GD-06 X 108696928 108696928 G A GUCY2F Missense_Mutation p.S398L 0.20 tolerated(0.16) benign(0.158) TCGA-EE-A2GD-06 X 117043931 117043931 C T KLHL13 Silent p.L236L 0.23 TCGA-EE-A2GD-06 X 117527160 117527160 C T WDR44 Missense_Mutation p.S251F 0.14 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A2GD-06 X 117527161 117527161 T A WDR44 Silent p.S251S 0.13 TCGA-EE-A2GD-06 X 119211062 119211062 C T RHOXF2B Missense_Mutation p.E91K 0.18 tolerated(0.28) benign(0.001) TCGA-EE-A2GD-06 X 123615780 123615780 C T TENM1 Missense_Mutation p.D1251N 0.13 tolerated(0.07) benign(0.436) TCGA-EE-A2GD-06 X 127185196 127185196 G A ACTRT1 Silent p.I330I 0.21 TCGA-EE-A2GD-06 X 127185252 127185252 C T ACTRT1 Missense_Mutation p.E312K 0.15 tolerated(0.14) possibly_damaging(0.874) TCGA-EE-A2GD-06 X 131228139 131228139 C T FRMD7 Missense_Mutation p.D105N 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GD-06 X 132159888 132159888 G A USP26 Silent p.S787S 0.16 TCGA-EE-A2GD-06 X 132160520 132160520 G A USP26 Nonsense_Mutation p.R577* 0.12 TCGA-EE-A2GD-06 X 135730395 135730395 A G CD40LG 5'UTR 0.26 TCGA-EE-A2GD-06 X 137717626 137717626 G A FGF13 Missense_Mutation p.P208L 0.23 tolerated(0.13) benign(0.21) TCGA-EE-A2GD-06 X 137717627 137717627 G A FGF13 Missense_Mutation p.P208S 0.23 deleterious(0.05) probably_damaging(0.95) TCGA-EE-A2GD-06 X 138644240 138644240 G A F9 3'UTR 0.21 TCGA-EE-A2GD-06 X 139866447 139866447 C T CDR1 Missense_Mutation p.E29K 0.21 deleterious(0.02) possibly_damaging(0.486) TCGA-EE-A2GD-06 X 140969392 140969392 C T MAGEC3 Missense_Mutation p.S240F 0.17 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2GD-06 X 142717912 142717912 G A SLITRK4 Missense_Mutation p.P338L 0.24 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2GD-06 X 142718365 142718365 C T SLITRK4 Missense_Mutation p.G187E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 X 149945902 149945902 G A CD99L2 Intron 0.14 TCGA-EE-A2GD-06 X 150154590 150154590 C T HMGB3 Missense_Mutation p.R73W 0.26 tolerated(0.06) benign(0.019) TCGA-EE-A2GD-06 X 150345310 150345310 C T GPR50 Silent p.I39I 0.20 TCGA-EE-A2GD-06 X 151123933 151123933 G A GABRE Silent p.F348F 0.18 TCGA-EE-A2GD-06 X 151303974 151303974 G A MAGEA10 Missense_Mutation p.S40L 0.18 deleterious(0.02) benign(0.036) TCGA-EE-A2GD-06 X 152085689 152085689 G A ZNF185 Missense_Mutation p.R80K 0.27 tolerated(0.2) benign(0.279) TCGA-EE-A2GD-06 X 153069974 153069974 C T PDZD4 Missense_Mutation p.G382R 0.15 tolerated(0.47) benign(0.128) TCGA-EE-A2GD-06 X 153136579 153136579 C T L1CAM Silent p.E152E 0.23 TCGA-EE-A2GD-06 X 17167037 17167037 G A REPS2 3'UTR 0.19 TCGA-EE-A2GD-06 X 17745908 17745908 C T NHS Missense_Mutation p.R1207C 0.17 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A2GD-06 X 22002442 22002442 C T SMS Silent p.I257I 0.23 TCGA-EE-A2GD-06 X 22010804 22010804 C T SMS Silent p.I345I 0.17 TCGA-EE-A2GD-06 X 2670207 2670207 C T XG 5'UTR 0.18 TCGA-EE-A2GD-06 X 30738986 30738986 G A GK Missense_Mutation p.E453K 0.21 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2GD-06 X 47426077 47426077 C T ARAF Silent p.F199F 0.27 TCGA-EE-A2GD-06 X 48214692 48214692 G A SSX3 5'UTR 0.14 TCGA-EE-A2GD-06 X 49855004 49855004 G A CLCN5 Missense_Mutation p.R659Q 0.12 tolerated(0.06) benign(0.029) TCGA-EE-A2GD-06 X 49855005 49855005 G A CLCN5 Silent p.R659R 0.13 TCGA-EE-A2GD-06 X 53279924 53279924 G A IQSEC2 Missense_Mutation p.R612C 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2GD-06 X 5811309 5811309 G A NLGN4X Missense_Mutation p.T667I 0.17 tolerated(0.07) benign(0.069) TCGA-EE-A2GD-06 X 70781690 70781690 G A OGT Missense_Mutation p.M639I 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A2GD-06 X 73063933 73063933 G A XIST RNA 0.26 TCGA-EE-A2GD-06 X 73812495 73812495 G A RLIM Missense_Mutation p.R219W 0.28 deleterious(0.02) unknown(0) TCGA-EE-A2GD-06 X 78426611 78426611 G A GPR174 Missense_Mutation p.G36E 0.37 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GD-06 X 84585958 84585958 C T POF1B Missense_Mutation p.G284E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GD-06 X 86887243 86887243 C T KLHL4 Missense_Mutation p.T453I 0.14 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A2GD-06 X 86921475 86921475 G A KLHL4 Intron 0.16 TCGA-EE-A2GE-06 10 114169274 114169274 C T ACSL5 Missense_Mutation p.A237V 0.15 deleterious(0.01) benign(0.005) TCGA-EE-A2GE-06 10 24835338 24835338 A C KIAA1217 3'UTR 0.30 TCGA-EE-A2GE-06 10 5958258 5958258 C T FBXO18 Missense_Mutation p.L594F 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GE-06 10 93220272 93220272 C T HECTD2 Silent p.V119V 0.25 TCGA-EE-A2GE-06 10 93220273 93220273 C T HECTD2 Missense_Mutation p.L120F 0.25 tolerated(0.71) benign(0.001) TCGA-EE-A2GE-06 10 96612560 96612560 G A CYP2C19 Silent p.Q454Q 0.18 TCGA-EE-A2GE-06 11 123847811 123847811 G A OR10S1 Silent p.P196P 0.12 TCGA-EE-A2GE-06 11 1254364 1254364 G A MUC5B Silent p.V729V 0.25 TCGA-EE-A2GE-06 11 1281887 1281887 C T MUC5B Silent p.I5666I 0.25 TCGA-EE-A2GE-06 11 1642682 1642682 G A KRTAP5-4 Silent p.S214S 0.12 TCGA-EE-A2GE-06 11 17427101 17427101 C T ABCC8 Silent p.E1113E 0.14 TCGA-EE-A2GE-06 11 17427103 17427103 C A ABCC8 Nonsense_Mutation p.E1113* 0.16 TCGA-EE-A2GE-06 11 17531100 17531100 G A USH1C Missense_Mutation p.P606S 0.19 deleterious_low_confidence(0.02) benign(0.02) TCGA-EE-A2GE-06 11 18101970 18101970 G A SAAL1 Silent p.F467F 0.13 TCGA-EE-A2GE-06 11 22833509 22833509 G A GAS2 Missense_Mutation p.D297N 0.10 tolerated(0.06) probably_damaging(0.968) TCGA-EE-A2GE-06 11 30926522 30926522 C T DCDC1 Missense_Mutation p.G1432R 0.24 tolerated(0.21) probably_damaging(0.979) TCGA-EE-A2GE-06 11 34156825 34156825 C T NAT10 Missense_Mutation p.T672I 0.11 tolerated(0.25) benign(0.024) TCGA-EE-A2GE-06 11 36614379 36614379 G A RAG2 Missense_Mutation p.S447F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 11 50004008 50004008 G A OR4C12 Silent p.F10F 0.19 TCGA-EE-A2GE-06 11 55433023 55433023 C T OR4C6 Silent p.P127P 0.16 TCGA-EE-A2GE-06 11 55872953 55872953 C T OR8H2 Silent p.I145I 0.09 TCGA-EE-A2GE-06 11 59211055 59211055 C T OR5A1 Silent p.I138I 0.10 TCGA-EE-A2GE-06 11 64567806 64567806 G A MAP4K2 Missense_Mutation p.P262S 0.12 deleterious(0) probably_damaging(0.949) TCGA-EE-A2GE-06 11 65733863 65733863 G A SART1 Missense_Mutation p.E342K 0.15 deleterious(0.01) possibly_damaging(0.767) TCGA-EE-A2GE-06 11 66109080 66109080 C T BRMS1 Missense_Mutation p.D52N 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GE-06 11 66109081 66109081 C T BRMS1 Silent p.E51E 0.11 TCGA-EE-A2GE-06 11 72040825 72040825 C T CLPB Missense_Mutation p.E297K 0.09 tolerated(0.09) benign(0.159) TCGA-EE-A2GE-06 11 75146615 75146615 G A GDPD5 Silent p.T585T 0.14 TCGA-EE-A2GE-06 11 82991187 82991187 G A CCDC90B Missense_Mutation p.H73Y 0.19 deleterious(0.02) possibly_damaging(0.891) TCGA-EE-A2GE-06 11 85627214 85627214 G A CCDC83 Missense_Mutation p.G371S 0.14 tolerated(0.47) benign(0) TCGA-EE-A2GE-06 11 85627226 85627226 G A CCDC83 Missense_Mutation p.G375R 0.10 tolerated(0.25) benign(0.178) TCGA-EE-A2GE-06 12 109883346 109883346 G A MYO1H Missense_Mutation p.E992K 0.12 deleterious(0.04) benign(0.011) TCGA-EE-A2GE-06 12 11035670 11035670 G A PRH1 Silent p.L30L 0.18 TCGA-EE-A2GE-06 12 124341693 124341693 C T DNAH10 Silent p.L2059L 0.14 TCGA-EE-A2GE-06 12 130919306 130919306 G A RIMBP2 Silent p.F725F 0.11 TCGA-EE-A2GE-06 12 132522579 132522579 C T EP400 Missense_Mutation p.L2049F 0.14 unknown(0) TCGA-EE-A2GE-06 12 15262345 15262345 T C RERG Missense_Mutation p.N100S 0.15 tolerated(0.75) benign(0.001) TCGA-EE-A2GE-06 12 31944931 31944931 G A H3F3C Missense_Mutation p.S57L 0.12 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EE-A2GE-06 12 49219238 49219238 G A CACNB3 Missense_Mutation p.A199T 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GE-06 12 49219239 49219239 C A CACNB3 Missense_Mutation p.A199D 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 12 49982310 49982310 G A FAM186B Missense_Mutation p.R821C 0.13 tolerated(0.09) benign(0.002) TCGA-EE-A2GE-06 12 50347952 50347952 G A AQP2 Silent p.T125T 0.16 TCGA-EE-A2GE-06 12 52827645 52827645 C T KRT75 Silent p.E148E 0.20 TCGA-EE-A2GE-06 12 59307766 59307766 G A LRIG3 Missense_Mutation p.S127F 0.14 tolerated(0.41) probably_damaging(0.93) TCGA-EE-A2GE-06 12 6624077 6624077 G A NCAPD2 Silent p.L326L 0.18 TCGA-EE-A2GE-06 12 6953123 6953123 C G GNB3 Missense_Mutation p.S227W 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 12 70960365 70960365 T A PTPRB Missense_Mutation p.N1252Y 0.18 deleterious(0.02) benign(0.123) TCGA-EE-A2GE-06 12 7649678 7649678 C T CD163 Missense_Mutation p.G277E 0.12 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GE-06 12 8051451 8051451 G A NANOGP1 RNA 0.12 TCGA-EE-A2GE-06 12 8673736 8673736 G A CLEC4D Missense_Mutation p.E173K 0.10 deleterious(0.02) benign(0.429) TCGA-EE-A2GE-06 12 94965246 94965246 G A TMCC3 Silent p.L467L 0.14 TCGA-EE-A2GE-06 13 45008793 45008793 G A TSC22D1 Missense_Mutation p.P1064L 0.13 tolerated_low_confidence(0.06) unknown(0) TCGA-EE-A2GE-06 14 103404735 103404735 G A CDC42BPB Missense_Mutation p.P1614L 0.24 deleterious(0.04) benign(0) TCGA-EE-A2GE-06 14 106622069 106622069 G A IGHV3-16 Missense_Mutation p.A59V 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.455) TCGA-EE-A2GE-06 14 106967191 106967191 A T IGHV1-46 Missense_Mutation p.I70N 0.20 deleterious(0) possibly_damaging(0.755) TCGA-EE-A2GE-06 14 24675720 24675720 G A TSSK4 Missense_Mutation p.M77I 0.15 tolerated(0.16) probably_damaging(0.986) TCGA-EE-A2GE-06 14 55836569 55836569 G A ATG14 Missense_Mutation p.S416L 0.17 tolerated(0.36) benign(0.014) TCGA-EE-A2GE-06 14 55836571 55836571 T A ATG14 Missense_Mutation p.E415D 0.18 tolerated(0.54) benign(0.004) TCGA-EE-A2GE-06 14 62462927 62462927 G A SYT16 Missense_Mutation p.E64K 0.09 tolerated_low_confidence(0.08) benign(0.026) TCGA-EE-A2GE-06 14 70925048 70925048 G A ADAM21 Missense_Mutation p.D278N 0.11 tolerated(0.28) benign(0.021) TCGA-EE-A2GE-06 15 22840322 22840322 C T TUBGCP5 Missense_Mutation p.P130S 0.09 deleterious(0.02) possibly_damaging(0.493) TCGA-EE-A2GE-06 15 22933600 22933600 C T CYFIP1 Silent p.S203S 0.14 TCGA-EE-A2GE-06 15 40584085 40584085 T A PLCB2 Missense_Mutation p.N856I 0.14 tolerated(0.12) possibly_damaging(0.714) TCGA-EE-A2GE-06 15 49054838 49054838 T C CEP152 Missense_Mutation p.K771R 0.08 tolerated(0.27) benign(0.084) TCGA-EE-A2GE-06 15 62359840 62359840 G A C2CD4A Missense_Mutation p.G10S 0.29 tolerated(1) benign(0.105) TCGA-EE-A2GE-06 15 62359841 62359841 G A C2CD4A Missense_Mutation p.G10D 0.29 tolerated(0.06) benign(0.105) TCGA-EE-A2GE-06 15 65490910 65490910 G A CILP Missense_Mutation p.R572C 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GE-06 15 69548414 69548414 G A GLCE Missense_Mutation p.G90D 0.12 tolerated(0.3) benign(0.01) TCGA-EE-A2GE-06 15 72455626 72455626 G A GRAMD2 Missense_Mutation p.L313F 0.18 deleterious(0.02) benign(0.32) TCGA-EE-A2GE-06 15 74922068 74922068 C T CLK3 Silent p.S587S 0.43 TCGA-EE-A2GE-06 15 81660664 81660664 G A TMC3 Missense_Mutation p.A81V 0.09 deleterious(0) probably_damaging(0.963) TCGA-EE-A2GE-06 15 91448664 91448664 C T MAN2A2 Missense_Mutation p.P106S 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GE-06 15 91448665 91448665 C T MAN2A2 Missense_Mutation p.P106L 0.08 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A2GE-06 16 14761504 14761504 G A BFAR Silent p.Q391Q 0.12 TCGA-EE-A2GE-06 16 16282690 16282690 G A ABCC6 Nonsense_Mutation p.Q593* 0.22 TCGA-EE-A2GE-06 16 22132294 22132294 C T VWA3A Silent p.S374S 0.33 TCGA-EE-A2GE-06 16 28944626 28944626 C T CD19 Missense_Mutation p.P211S 0.28 tolerated(0.3) benign(0.086) TCGA-EE-A2GE-06 16 30128278 30128278 C T MAPK3 Silent p.R318R 0.15 TCGA-EE-A2GE-06 16 33647278 33647278 C T RP11-812E19.9 Missense_Mutation p.E108K 0.20 deleterious_low_confidence(0.02) benign(0.105) TCGA-EE-A2GE-06 16 418402 418402 G C MRPL28 Missense_Mutation p.P197A 0.21 deleterious(0.02) benign(0.159) TCGA-EE-A2GE-06 16 58582474 58582474 C T CNOT1 Intron 0.24 TCGA-EE-A2GE-06 16 67236598 67236598 C T ELMO3 Silent p.F542F 0.17 TCGA-EE-A2GE-06 17 10429120 10429120 C T MYH2 Missense_Mutation p.E1421K 0.11 deleterious(0) probably_damaging(0.937) TCGA-EE-A2GE-06 17 10432922 10432922 G A MYH2 Silent p.L1026L 0.09 TCGA-EE-A2GE-06 17 1787173 1787173 G A RPA1 Missense_Mutation p.G437R 0.12 deleterious(0.01) possibly_damaging(0.86) TCGA-EE-A2GE-06 17 18881398 18881398 C T FAM83G Silent p.L527L 0.17 TCGA-EE-A2GE-06 17 26900872 26900872 G A ALDOC Nonsense_Mutation p.R294* 0.14 TCGA-EE-A2GE-06 17 29280332 29280332 C T ADAP2 Silent p.Y256Y 0.17 TCGA-EE-A2GE-06 17 33289448 33289448 C T ZNF830 Missense_Mutation p.S288F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 17 33289449 33289449 C T ZNF830 Silent p.S288S 0.10 TCGA-EE-A2GE-06 17 36704930 36704930 C T SRCIN1 Missense_Mutation p.E1045K 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2GE-06 17 36971165 36971165 G A CWC25 Missense_Mutation p.S126F 0.22 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GE-06 17 37922309 37922309 G A IKZF3 Missense_Mutation p.P422S 0.18 tolerated(0.21) benign(0.034) TCGA-EE-A2GE-06 17 38325652 38325652 C T CASC3 Missense_Mutation p.P681S 0.18 deleterious(0) unknown(0) TCGA-EE-A2GE-06 17 38325653 38325653 C T CASC3 Missense_Mutation p.P681L 0.20 deleterious(0) unknown(0) TCGA-EE-A2GE-06 17 38638427 38638427 G A TNS4 Silent p.S542S 0.29 TCGA-EE-A2GE-06 17 39041341 39041341 G T KRT20 Missense_Mutation p.P33T 0.21 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2GE-06 17 47044539 47044539 C T GIP Missense_Mutation p.G19E 0.13 tolerated(0.21) possibly_damaging(0.521) TCGA-EE-A2GE-06 17 5356903 5356903 G A DHX33 Missense_Mutation p.P465S 0.10 tolerated(0.33) benign(0.046) TCGA-EE-A2GE-06 17 61901534 61901534 G A FTSJ3 Missense_Mutation p.P355L 0.19 tolerated(0.34) benign(0.004) TCGA-EE-A2GE-06 17 62758806 62758806 C T hsa-mir-6080 RNA 0.20 TCGA-EE-A2GE-06 17 62758807 62758807 C T hsa-mir-6080 RNA 0.21 TCGA-EE-A2GE-06 17 673150 673150 G A GLOD4 Missense_Mutation p.L264F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 17 71354240 71354240 G A SDK2 Silent p.Y1857Y 0.08 TCGA-EE-A2GE-06 17 78084624 78084624 C T GAA Silent p.F512F 0.17 TCGA-EE-A2GE-06 17 79867395 79867395 G A PCYT2 Missense_Mutation p.T58I 0.14 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2GE-06 18 10677820 10677820 G A PIEZO2 Missense_Mutation p.P2556S 0.11 tolerated(0.68) benign(0.002) TCGA-EE-A2GE-06 18 12859190 12859190 G A PTPN2 Nonsense_Mutation p.R45* 0.11 TCGA-EE-A2GE-06 18 29340392 29340392 C T SLC25A52 Missense_Mutation p.R88Q 0.14 tolerated(0.2) benign(0.033) TCGA-EE-A2GE-06 18 48333145 48333145 C T MRO Missense_Mutation p.D73N 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GE-06 18 55399013 55399013 C A ATP8B1 Silent p.T9T 0.19 TCGA-EE-A2GE-06 19 12462032 12462032 C T ZNF442 Missense_Mutation p.E123K 0.24 tolerated(1) probably_damaging(0.993) TCGA-EE-A2GE-06 19 12975902 12975902 C T MAST1 Silent p.F516F 0.11 TCGA-EE-A2GE-06 19 13941135 13941135 G A ZSWIM4 Silent p.R747R 0.19 TCGA-EE-A2GE-06 19 15806987 15806987 C T CYP4F12 Silent p.I422I 0.20 TCGA-EE-A2GE-06 19 16000349 16000349 C T CYP4F2 Missense_Mutation p.D268N 0.13 deleterious(0.04) benign(0.25) TCGA-EE-A2GE-06 19 17729741 17729741 C T UNC13A Missense_Mutation p.E1435K 0.27 deleterious(0.04) possibly_damaging(0.848) TCGA-EE-A2GE-06 19 21131852 21131852 A G ZNF85 Missense_Mutation p.K178E 0.19 tolerated(1) benign(0.006) TCGA-EE-A2GE-06 19 21992551 21992551 G T ZNF43 Missense_Mutation p.F96L 0.10 tolerated(0.19) benign(0.009) TCGA-EE-A2GE-06 19 22362861 22362861 C T ZNF676 Missense_Mutation p.R553K 0.12 tolerated(0.46) benign(0.002) TCGA-EE-A2GE-06 19 36245348 36245348 C T LIN37 Silent p.I238I 0.14 TCGA-EE-A2GE-06 19 39038922 39038922 G A RYR1 Silent p.V4048V 0.24 TCGA-EE-A2GE-06 19 43585056 43585056 C T PSG2 Missense_Mutation p.G136E 0.12 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GE-06 19 45297477 45297477 C T CBLC Missense_Mutation p.P434L 0.15 tolerated(0.13) probably_damaging(0.994) TCGA-EE-A2GE-06 19 45815063 45815063 G A CKM Silent p.S199S 0.29 TCGA-EE-A2GE-06 19 46307711 46307711 C G RSPH6A Missense_Mutation p.Q484H 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GE-06 19 48869087 48869087 G A SYNGR4 5'UTR 0.12 TCGA-EE-A2GE-06 19 4902816 4902816 C T ARRDC5 Missense_Mutation p.E22K 0.14 tolerated(0.13) possibly_damaging(0.713) TCGA-EE-A2GE-06 19 51165351 51165351 G A SHANK1 Silent p.F2119F 0.23 TCGA-EE-A2GE-06 19 51563731 51563731 G A KLK13 Silent p.V66V 0.16 TCGA-EE-A2GE-06 19 51563732 51563732 A C KLK13 Missense_Mutation p.V66G 0.16 deleterious(0) probably_damaging(0.939) TCGA-EE-A2GE-06 19 51918076 51918076 A G SIGLEC10 Splice_Site p.X539_splice 0.21 TCGA-EE-A2GE-06 19 51981873 51981873 C T CEACAM18 Missense_Mutation p.L54F 0.21 tolerated_low_confidence(0.2) benign(0.02) TCGA-EE-A2GE-06 19 56736307 56736307 C T ZSCAN5A Missense_Mutation p.D37N 0.09 tolerated(0.09) benign(0.004) TCGA-EE-A2GE-06 19 57646552 57646552 G A ZIM3 Missense_Mutation p.H385Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GE-06 19 8606848 8606848 C T MYO1F Missense_Mutation p.E518K 0.16 deleterious(0.04) possibly_damaging(0.871) TCGA-EE-A2GE-06 19 9047542 9047542 C T MUC16 Silent p.R11363R 0.17 TCGA-EE-A2GE-06 19 9084753 9084753 G A MUC16 Silent p.I2354I 0.21 TCGA-EE-A2GE-06 19 9090527 9090527 C T MUC16 Missense_Mutation p.E430K 0.23 unknown(0) TCGA-EE-A2GE-06 1 100327208 100327208 G A AGL Missense_Mutation p.D78N 0.12 tolerated(0.17) benign(0.188) TCGA-EE-A2GE-06 1 109731788 109731788 G A KIAA1324 Silent p.G440G 0.23 TCGA-EE-A2GE-06 1 118501935 118501935 G A WDR3 Missense_Mutation p.M899I 0.21 tolerated(0.17) benign(0.002) TCGA-EE-A2GE-06 1 154317975 154317975 C T ATP8B2 Missense_Mutation p.T916I 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GE-06 1 158988354 158988354 C T IFI16 Silent p.I295I 0.26 TCGA-EE-A2GE-06 1 161335340 161335340 C T C1orf192 Silent p.G108G 0.36 TCGA-EE-A2GE-06 1 16577797 16577797 G A FBXO42 Missense_Mutation p.P508S 0.09 tolerated_low_confidence(0.08) benign(0.001) TCGA-EE-A2GE-06 1 168282099 168282099 G A TBX19 Silent p.S402S 0.29 TCGA-EE-A2GE-06 1 172434488 172434488 G A C1orf105 Missense_Mutation p.D131N 0.09 tolerated(0.46) possibly_damaging(0.728) TCGA-EE-A2GE-06 1 17322554 17322554 G A ATP13A2 Nonsense_Mutation p.R487* 0.11 TCGA-EE-A2GE-06 1 180885966 180885966 C T KIAA1614 Missense_Mutation p.P243S 0.41 tolerated(0.17) benign(0.02) TCGA-EE-A2GE-06 1 183087213 183087213 C T LAMC1 Missense_Mutation p.P641L 0.25 tolerated(0.08) benign(0.424) TCGA-EE-A2GE-06 1 190250796 190250796 G A BRINP3 Silent p.F107F 0.42 TCGA-EE-A2GE-06 1 19441953 19441953 G A UBR4 Missense_Mutation p.P3668S 0.13 probably_damaging(0.968) TCGA-EE-A2GE-06 1 19441954 19441954 G A UBR4 Silent p.V3667V 0.12 TCGA-EE-A2GE-06 1 196887503 196887503 G A CFHR4 Silent p.R567R 0.10 TCGA-EE-A2GE-06 1 20066390 20066390 G A TMCO4 Missense_Mutation p.P369L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 1 215777580 215777580 G A KCTD3 Silent p.Q415Q 0.37 TCGA-EE-A2GE-06 1 21799391 21799391 G A NBPF3 Silent p.Q239Q 0.17 TCGA-EE-A2GE-06 1 234452464 234452464 C T SLC35F3 Silent p.A315A 0.11 TCGA-EE-A2GE-06 1 234452465 234452465 C T SLC35F3 Missense_Mutation p.L316F 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GE-06 1 23850914 23850914 C T E2F2 Missense_Mutation p.G107R 0.31 deleterious(0.01) benign(0.162) TCGA-EE-A2GE-06 1 248308635 248308635 C T OR2M5 Silent p.L62L 0.06 TCGA-EE-A2GE-06 1 248309207 248309207 G A OR2M5 Missense_Mutation p.G253E 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GE-06 1 3328920 3328920 C T PRDM16 Missense_Mutation p.P720L 0.15 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GE-06 1 3348622 3348622 C T PRDM16 Missense_Mutation p.A1205V 0.22 deleterious(0.03) benign(0.24) TCGA-EE-A2GE-06 1 36307284 36307284 G A AGO4 Missense_Mutation p.G703E 0.13 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GE-06 1 38227564 38227564 G A EPHA10 Silent p.T121T 0.12 TCGA-EE-A2GE-06 1 41012390 41012390 C T ZNF684 Missense_Mutation p.S132L 0.28 tolerated(0.32) benign(0.04) TCGA-EE-A2GE-06 1 43055041 43055041 T C CCDC30 Silent p.L424L 0.16 TCGA-EE-A2GE-06 1 43055042 43055042 T C CCDC30 Missense_Mutation p.L424S 0.17 tolerated(0.27) possibly_damaging(0.895) TCGA-EE-A2GE-06 1 43772851 43772851 G A TIE1 Missense_Mutation p.E227K 0.12 tolerated(0.36) benign(0.092) TCGA-EE-A2GE-06 1 50610828 50610828 G A ELAVL4 Missense_Mutation p.G87D 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 1 55525220 55525220 C T PCSK9 Missense_Mutation p.A522V 0.21 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GE-06 1 92546112 92546112 T A BTBD8 5'UTR 0.19 TCGA-EE-A2GE-06 20 30432786 30432786 C G FOXS1 Missense_Mutation p.R187P 0.29 tolerated(0.17) possibly_damaging(0.6) TCGA-EE-A2GE-06 20 31629805 31629805 C T BPIFB6 Missense_Mutation p.S391L 0.15 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A2GE-06 20 34022260 34022260 C T GDF5 Missense_Mutation p.R318Q 0.31 tolerated(0.11) benign(0.044) TCGA-EE-A2GE-06 20 42694499 42694499 C T TOX2 Missense_Mutation p.P370S 0.22 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A2GE-06 20 48522808 48522808 G A SPATA2 Missense_Mutation p.S304F 0.21 deleterious(0.02) possibly_damaging(0.724) TCGA-EE-A2GE-06 20 51870548 51870548 G A TSHZ2 Missense_Mutation p.R184Q 0.17 tolerated(0.46) possibly_damaging(0.466) TCGA-EE-A2GE-06 20 51870549 51870549 G A TSHZ2 Silent p.R184R 0.17 TCGA-EE-A2GE-06 20 52775632 52775632 T A CYP24A1 Missense_Mutation p.N341Y 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GE-06 20 57290385 57290385 C T NPEPL1 3'UTR 0.18 TCGA-EE-A2GE-06 20 60448822 60448822 G A CDH4 Missense_Mutation p.D306N 0.24 deleterious(0.01) benign(0.203) TCGA-EE-A2GE-06 20 8696984 8696984 G A PLCB1 Missense_Mutation p.E442K 0.28 deleterious(0.04) benign(0.243) TCGA-EE-A2GE-06 21 37650525 37650525 C G DOPEY2 Missense_Mutation p.S1947R 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 21 41559849 41559849 C T DSCAM Silent p.E873E 0.15 TCGA-EE-A2GE-06 21 42080554 42080554 C T DSCAM Missense_Mutation p.G63S 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A2GE-06 21 47700421 47700421 C T MCM3AP Silent p.R504R 0.15 TCGA-EE-A2GE-06 22 21799328 21799328 C T HIC2 Silent p.V48V 0.19 TCGA-EE-A2GE-06 22 22677061 22677061 C T IGLV1-51 Missense_Mutation p.S30F 0.12 deleterious(0.01) possibly_damaging(0.693) TCGA-EE-A2GE-06 22 22892369 22892369 C T PRAME Nonsense_Mutation p.W244* 0.14 TCGA-EE-A2GE-06 22 35789528 35789528 C T HMOX1 Silent p.L268L 0.15 TCGA-EE-A2GE-06 22 36702008 36702008 G A MYH9 Silent p.P709P 0.13 TCGA-EE-A2GE-06 22 36702035 36702035 G A MYH9 Silent p.G700G 0.12 TCGA-EE-A2GE-06 22 45683140 45683140 C T UPK3A Missense_Mutation p.P99L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 2 11905715 11905715 G A LPIN1 Silent p.K65K 0.35 TCGA-EE-A2GE-06 2 141473615 141473615 C T LRP1B Missense_Mutation p.G1984S 0.09 probably_damaging(0.959) TCGA-EE-A2GE-06 2 179323268 179323268 G A DFNB59 Missense_Mutation p.G194E 0.28 tolerated(0.54) possibly_damaging(0.538) TCGA-EE-A2GE-06 2 179397387 179397387 C T TTN Missense_Mutation p.R34652K 0.46 TCGA-EE-A2GE-06 2 179589042 179589042 G A TTN Silent p.F7020F 0.41 TCGA-EE-A2GE-06 2 183104998 183104998 A C PDE1A Missense_Mutation p.D79E 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2GE-06 2 204030954 204030954 C T NBEAL1 Missense_Mutation p.P1904S 0.31 tolerated(0.09) benign(0.081) TCGA-EE-A2GE-06 2 238303716 238303716 C T COL6A3 Missense_Mutation p.D75N 0.30 probably_damaging(1) TCGA-EE-A2GE-06 2 44547818 44547818 G A SLC3A1 3'UTR 0.32 TCGA-EE-A2GE-06 2 55555445 55555445 G A CCDC88A Silent p.R993R 0.29 TCGA-EE-A2GE-06 2 669634 669634 C A TMEM18 Silent p.L123L 0.34 TCGA-EE-A2GE-06 2 80646628 80646628 C T CTNNA2 Missense_Mutation p.P398S 0.39 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GE-06 3 10320601 10320601 G A TATDN2 Silent p.P726P 0.12 TCGA-EE-A2GE-06 3 10320602 10320602 G A TATDN2 Missense_Mutation p.G727S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 3 10342905 10342905 C T SEC13 3'UTR 0.22 TCGA-EE-A2GE-06 3 108751625 108751625 C T MORC1 Missense_Mutation p.E503K 0.17 tolerated(0.19) benign(0.018) TCGA-EE-A2GE-06 3 111996615 111996615 G A SLC9C1 Silent p.T137T 0.15 TCGA-EE-A2GE-06 3 121137996 121137996 T G STXBP5L 3'UTR 0.13 TCGA-EE-A2GE-06 3 12531302 12531302 G A TSEN2 Translation_Start_Site p.M1? 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 3 141272772 141272772 G A RASA2 Missense_Mutation p.G201S 0.09 tolerated(0.37) probably_damaging(0.971) TCGA-EE-A2GE-06 3 1444027 1444027 G C CNTN6 Missense_Mutation p.S948T 0.18 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A2GE-06 3 164716418 164716418 G A SI Missense_Mutation p.R1484C 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 3 169099072 169099072 C T MECOM Missense_Mutation p.G117E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 3 183995065 183995065 G A ECE2 Missense_Mutation p.E215K 0.18 tolerated(0.16) benign(0.415) TCGA-EE-A2GE-06 3 184086000 184086000 G A POLR2H Missense_Mutation p.R124K 0.12 tolerated(0.1) benign(0.382) TCGA-EE-A2GE-06 3 184086001 184086001 G A POLR2H Silent p.R124R 0.12 TCGA-EE-A2GE-06 3 37367211 37367211 T C GOLGA4 Silent p.L1300L 0.31 TCGA-EE-A2GE-06 3 47282423 47282423 C T KIF9 Missense_Mutation p.E598K 0.22 deleterious(0) possibly_damaging(0.858) TCGA-EE-A2GE-06 3 47470067 47470067 G A SCAP Missense_Mutation p.R116C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 3 48219437 48219437 G A CDC25A Silent p.F197F 0.22 TCGA-EE-A2GE-06 3 52610575 52610575 G A PBRM1 Missense_Mutation p.P1200S 0.19 tolerated(0.06) possibly_damaging(0.803) TCGA-EE-A2GE-06 3 52939159 52939159 G A SFMBT1 Missense_Mutation p.A865V 0.13 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GE-06 3 77147247 77147247 G A ROBO2 Silent p.T64T 0.26 TCGA-EE-A2GE-06 3 97744447 97744447 C T GABRR3 RNA 0.19 TCGA-EE-A2GE-06 4 100232054 100232054 T C ADH1B Missense_Mutation p.K324R 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2GE-06 4 106859511 106859511 G A NPNT Missense_Mutation p.G177R 0.09 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GE-06 4 120107261 120107261 G A MYOZ2 Missense_Mutation p.R234K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GE-06 4 120528041 120528041 G A PDE5A Silent p.F188F 0.21 TCGA-EE-A2GE-06 4 169086467 169086467 A G ANXA10 Missense_Mutation p.N157S 0.14 tolerated(1) benign(0.088) TCGA-EE-A2GE-06 4 187004921 187004921 C T TLR3 Missense_Mutation p.S694L 0.16 tolerated(0.72) benign(0.002) TCGA-EE-A2GE-06 4 46060533 46060533 C T GABRG1 Silent p.R244R 0.21 TCGA-EE-A2GE-06 4 72425842 72425842 G A SLC4A4 Missense_Mutation p.M990I 0.11 deleterious(0) benign(0.103) TCGA-EE-A2GE-06 4 75482122 75482122 G T AREGB Missense_Mutation p.G60W 0.19 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GE-06 4 89304453 89304453 G A HERC6 Missense_Mutation p.G94R 0.50 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GE-06 5 140183169 140183169 C T PCDHA3 Missense_Mutation p.S796L 0.18 tolerated_low_confidence(0.79) benign(0.001) TCGA-EE-A2GE-06 5 140562470 140562470 C T PCDHB16 Silent p.N112N 0.22 TCGA-EE-A2GE-06 5 140784277 140784277 C T PCDHGA9 Silent p.Y586Y 0.11 TCGA-EE-A2GE-06 5 140784278 140784278 C T PCDHGA9 Silent p.L587L 0.11 TCGA-EE-A2GE-06 5 159776541 159776541 C T C1QTNF2 Silent p.R209R 0.18 TCGA-EE-A2GE-06 5 161117246 161117246 G A GABRA6 Missense_Mutation p.R238K 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GE-06 5 178506357 178506357 C T ZNF354C Silent p.A308A 0.15 TCGA-EE-A2GE-06 5 180477129 180477129 G A BTNL9 Missense_Mutation p.E166K 0.11 tolerated(0.24) benign(0.02) TCGA-EE-A2GE-06 5 19503173 19503173 C T CDH18 Missense_Mutation p.G520R 0.12 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GE-06 5 19721469 19721469 G A CDH18 Silent p.V210V 0.13 TCGA-EE-A2GE-06 5 35904535 35904535 G A CAPSL 3'UTR 0.38 TCGA-EE-A2GE-06 5 89923430 89923430 C T GPR98 Missense_Mutation p.H359Y 0.08 benign(0.403) TCGA-EE-A2GE-06 5 89992796 89992796 C T GPR98 Missense_Mutation p.S2663F 0.11 probably_damaging(0.979) TCGA-EE-A2GE-06 5 95746679 95746679 C T PCSK1 Silent p.G298G 0.14 TCGA-EE-A2GE-06 6 118475630 118475630 C T SLC35F1 Silent p.L66L 0.21 TCGA-EE-A2GE-06 6 144811240 144811240 A G UTRN Missense_Mutation p.T1390A 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2GE-06 6 154360946 154360946 C T OPRM1 Silent p.F182F 0.17 TCGA-EE-A2GE-06 6 165827142 165827142 C T PDE10A Silent p.R375R 0.24 TCGA-EE-A2GE-06 6 167753853 167753853 G A TTLL2 Silent p.R155R 0.16 TCGA-EE-A2GE-06 6 169637724 169637724 G A THBS2 Silent p.T432T 0.10 TCGA-EE-A2GE-06 6 30680344 30680344 C T MDC1 Missense_Mutation p.E459K 0.26 tolerated(0.08) probably_damaging(0.971) TCGA-EE-A2GE-06 6 30892296 30892296 C T VARS2 Missense_Mutation p.P908S 0.26 deleterious(0.03) benign(0.413) TCGA-EE-A2GE-06 6 31609612 31609612 G A BAG6 Nonsense_Mutation p.R786* 0.07 TCGA-EE-A2GE-06 6 31760052 31760052 C T VARS Silent p.E271E 0.17 TCGA-EE-A2GE-06 6 33631628 33631628 C T ITPR3 Silent p.T373T 0.15 TCGA-EE-A2GE-06 6 36291299 36291299 G A C6orf222 Silent p.V414V 0.20 TCGA-EE-A2GE-06 6 51889856 51889856 G A PKHD1 Silent p.S1584S 0.24 TCGA-EE-A2GE-06 6 6225052 6225052 C T F13A1 Nonsense_Mutation p.W280* 0.14 TCGA-EE-A2GE-06 6 85446745 85446745 G A TBX18 Silent p.P494P 0.19 TCGA-EE-A2GE-06 7 102097862 102097862 G A ALKBH4 Silent p.S296S 0.13 TCGA-EE-A2GE-06 7 121650643 121650643 G A PTPRZ1 Missense_Mutation p.D515N 0.31 tolerated(0.13) benign(0.051) TCGA-EE-A2GE-06 7 139311392 139311392 G A HIPK2 Missense_Mutation p.P525L 0.32 deleterious(0) possibly_damaging(0.47) TCGA-EE-A2GE-06 7 139833371 139833371 G A KDM7A Silent p.F122F 0.26 TCGA-EE-A2GE-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GE-06 7 140453138 140453138 T G BRAF Silent p.T599T 0.28 TCGA-EE-A2GE-06 7 142637485 142637485 G A C7orf34 Silent p.V85V 0.34 TCGA-EE-A2GE-06 7 142637486 142637486 G A C7orf34 Missense_Mutation p.G86S 0.35 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GE-06 7 143510029 143510029 C T RP11-61L23.2 RNA 0.21 TCGA-EE-A2GE-06 7 150163850 150163850 G A GIMAP8 Missense_Mutation p.G22R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 7 150163851 150163851 G A GIMAP8 Missense_Mutation p.G22E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 7 150171244 150171244 G A GIMAP8 Missense_Mutation p.G276E 0.12 tolerated(0.16) benign(0.123) TCGA-EE-A2GE-06 7 43351401 43351401 G A HECW1 Missense_Mutation p.A23T 0.13 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-EE-A2GE-06 7 44578823 44578823 C T NPC1L1 Silent p.R391R 0.38 TCGA-EE-A2GE-06 7 47333376 47333376 G A TNS3 Missense_Mutation p.P1243S 0.22 tolerated(0.23) benign(0.027) TCGA-EE-A2GE-06 7 82764395 82764395 G A PCLO Missense_Mutation p.P824L 0.15 unknown(0) TCGA-EE-A2GE-06 7 86416341 86416341 C T GRM3 Silent p.L411L 0.26 TCGA-EE-A2GE-06 7 88965299 88965299 G A ZNF804B Silent p.T1001T 0.17 TCGA-EE-A2GE-06 7 94919500 94919500 A T PPP1R9A Missense_Mutation p.K1337I 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 7 98609128 98609128 C T TRRAP Silent p.V3755V 0.24 TCGA-EE-A2GE-06 7 99273788 99273788 G A CYP3A5 Missense_Mutation p.P39S 0.26 tolerated(0.06) possibly_damaging(0.498) TCGA-EE-A2GE-06 8 101016257 101016257 C T RGS22 Missense_Mutation p.D842N 0.13 tolerated(1) benign(0.001) TCGA-EE-A2GE-06 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.18 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2GE-06 8 110099745 110099745 G A TRHR Missense_Mutation p.E2K 0.14 deleterious(0) benign(0.223) TCGA-EE-A2GE-06 8 120620200 120620200 G A ENPP2 Silent p.T265T 0.16 TCGA-EE-A2GE-06 8 124140586 124140586 G A TBC1D31 Missense_Mutation p.M650I 0.25 deleterious(0.03) benign(0.017) TCGA-EE-A2GE-06 8 125716371 125716371 C T MTSS1 Missense_Mutation p.R45Q 0.16 deleterious(0) possibly_damaging(0.478) TCGA-EE-A2GE-06 8 143747283 143747283 G A JRK RNA 0.33 TCGA-EE-A2GE-06 8 144621039 144621039 G A ZC3H3 Silent p.P166P 0.23 TCGA-EE-A2GE-06 8 145533467 145533467 C T HSF1 Silent p.L125L 0.13 TCGA-EE-A2GE-06 8 2026819 2026819 G A MYOM2 Missense_Mutation p.E423K 0.37 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2GE-06 8 23294537 23294537 G A ENTPD4 Silent p.F428F 0.23 TCGA-EE-A2GE-06 8 24200663 24200663 C T ADAM28 Missense_Mutation p.T627I 0.15 deleterious(0) benign(0.391) TCGA-EE-A2GE-06 8 24774698 24774698 C T NEFM Missense_Mutation p.P444S 0.11 tolerated(0.06) unknown(0) TCGA-EE-A2GE-06 8 30703356 30703356 T C TEX15 Missense_Mutation p.T1060A 0.26 deleterious(0.04) benign(0.022) TCGA-EE-A2GE-06 8 3141843 3141843 C T CSMD1 Missense_Mutation p.E1326K 0.22 probably_damaging(0.942) TCGA-EE-A2GE-06 8 3263620 3263620 C T CSMD1 Missense_Mutation p.G732E 0.32 probably_damaging(1) TCGA-EE-A2GE-06 8 38194888 38194888 G A WHSC1L1 Missense_Mutation p.P282L 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GE-06 8 38194889 38194889 G A WHSC1L1 Missense_Mutation p.P282S 0.18 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GE-06 8 55534734 55534734 G A RP1 Missense_Mutation p.E225K 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GE-06 8 76472605 76472605 C T HNF4G Missense_Mutation p.H374Y 0.24 tolerated(0.48) possibly_damaging(0.477) TCGA-EE-A2GE-06 8 77766741 77766741 C T ZFHX4 Silent p.F2528F 0.12 TCGA-EE-A2GE-06 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.07 deleterious(0.03) possibly_damaging(0.564) TCGA-EE-A2GE-06 9 114411966 114411966 C T DNAJC25 Silent p.I241I 0.37 TCGA-EE-A2GE-06 9 12695539 12695539 G A TYRP1 Missense_Mutation p.S137N 0.17 deleterious(0.04) benign(0.011) TCGA-EE-A2GE-06 9 32450140 32450140 G A ACO1 3'UTR 0.23 TCGA-EE-A2GE-06 9 32450141 32450141 G A ACO1 3'UTR 0.24 TCGA-EE-A2GE-06 9 37707446 37707446 G A FRMPD1 Silent p.R45R 0.37 TCGA-EE-A2GE-06 9 37777689 37777689 G A TRMT10B Silent p.R312R 0.15 TCGA-EE-A2GE-06 X 100497922 100497922 C T DRP2 Silent p.L335L 0.37 TCGA-EE-A2GE-06 X 138669924 138669924 G A MCF2 Nonsense_Mutation p.Q901* 0.31 TCGA-EE-A2GE-06 X 1407689 1407689 C T CSF2RA Silent p.F127F 0.08 TCGA-EE-A2GE-06 X 151092512 151092512 C T MAGEA4 Nonsense_Mutation p.R126* 0.29 TCGA-EE-A2GE-06 X 153925439 153925439 A G GAB3 Silent p.H465H 0.40 TCGA-EE-A2GE-06 X 22117214 22117214 C G PHEX Missense_Mutation p.R342G 0.15 tolerated(0.21) probably_damaging(0.999) TCGA-EE-A2GE-06 X 50085299 50085299 C T CCNB3 Silent p.L1205L 0.26 TCGA-EE-A2GE-06 X 76874353 76874354 - CACA ATRX Frame_Shift_Ins p.A1790Vfs*21 0.33 TCGA-EE-A2GE-06 X 79945479 79945479 G A BRWD3 Missense_Mutation p.L1239F 0.38 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GH-06 10 127677120 127677120 G A FANK1 Silent p.T64T 0.20 TCGA-EE-A2GH-06 10 127677121 127677121 G A FANK1 Missense_Mutation p.G65R 0.18 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2GH-06 10 18803447 18803447 G A CACNB2 Intron 0.13 TCGA-EE-A2GH-06 10 23326322 23326322 G A ARMC3 Missense_Mutation p.E845K 0.24 tolerated(0.8) benign(0.314) TCGA-EE-A2GH-06 10 28225697 28225697 C T ARMC4 Missense_Mutation p.G737E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 10 43622166 43622166 C T RET Silent p.L1061L 0.25 TCGA-EE-A2GH-06 10 51818942 51818942 G A RP11-324H6.5 RNA 0.25 TCGA-EE-A2GH-06 10 61830991 61830991 G A ANK3 Silent p.T3216T 0.21 TCGA-EE-A2GH-06 10 78674772 78674772 C T KCNMA1 Missense_Mutation p.D963N 0.16 tolerated(0.45) benign(0.008) TCGA-EE-A2GH-06 10 871151 871151 A - LARP4B Frame_Shift_Del p.N447Mfs*45 0.17 TCGA-EE-A2GH-06 10 93753466 93753466 C T BTAF1 Silent p.L1021L 0.16 TCGA-EE-A2GH-06 11 100126624 100126624 C T CNTN5 Missense_Mutation p.S713F 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GH-06 11 117064599 117064599 C A SIDT2 Missense_Mutation p.P748T 0.08 deleterious(0.05) possibly_damaging(0.527) TCGA-EE-A2GH-06 11 12247799 12247799 C T MICAL2 Silent p.I590I 0.13 TCGA-EE-A2GH-06 11 123814281 123814281 C T OR6T1 Missense_Mutation p.D89N 0.24 tolerated(0.65) benign(0.001) TCGA-EE-A2GH-06 11 124618286 124618286 C T VSIG2 Missense_Mutation p.R284Q 0.19 deleterious(0.02) benign(0.067) TCGA-EE-A2GH-06 11 20699480 20699480 G A NELL1 Missense_Mutation p.V20M 0.15 tolerated(0.08) benign(0.002) TCGA-EE-A2GH-06 11 2423876 2423876 G A TSSC4 Missense_Mutation p.G5R 0.13 deleterious(0.04) possibly_damaging(0.563) TCGA-EE-A2GH-06 11 2423877 2423877 G A TSSC4 Missense_Mutation p.G5E 0.14 tolerated(0.24) benign(0.011) TCGA-EE-A2GH-06 11 32954688 32954688 C A QSER1 Silent p.S499S 0.19 TCGA-EE-A2GH-06 11 3845143 3845143 G A PGAP2 Missense_Mutation p.A127T 0.18 deleterious(0) possibly_damaging(0.896) TCGA-EE-A2GH-06 11 48267210 48267210 C T OR4X2 Silent p.F185F 0.16 TCGA-EE-A2GH-06 11 48347292 48347292 C T OR4C3 Missense_Mutation p.A267V 0.16 deleterious(0) possibly_damaging(0.628) TCGA-EE-A2GH-06 11 51412241 51412241 G A OR4A5 Missense_Mutation p.S52F 0.20 deleterious_low_confidence(0.05) benign(0.111) TCGA-EE-A2GH-06 11 51515533 51515533 C T OR4C46 Silent p.L84L 0.13 TCGA-EE-A2GH-06 11 5172910 5172910 A T OR52A1 Silent p.R230R 0.16 TCGA-EE-A2GH-06 11 55065680 55065680 G A TRIM51HP RNA 0.12 TCGA-EE-A2GH-06 11 55135551 55135551 G A OR4A15 Missense_Mutation p.M64I 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GH-06 11 55433174 55433174 G A OR4C6 Missense_Mutation p.D178N 0.14 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2GH-06 11 55761571 55761571 G A OR5F1 Silent p.F177F 0.11 TCGA-EE-A2GH-06 11 55860825 55860825 C T OR8I2 Silent p.L14L 0.14 TCGA-EE-A2GH-06 11 56345140 56345140 C T OR5M10 Missense_Mutation p.D20N 0.10 tolerated(0.29) benign(0.012) TCGA-EE-A2GH-06 11 57995811 57995811 G A OR10Q1 Silent p.I179I 0.14 TCGA-EE-A2GH-06 11 58207172 58207172 G A OR5B12 Silent p.F151F 0.12 TCGA-EE-A2GH-06 11 59225122 59225122 G A OR4D6 Missense_Mutation p.G230E 0.12 tolerated(0.09) benign(0.134) TCGA-EE-A2GH-06 11 59857832 59857832 G A MS4A2 Missense_Mutation p.M70I 0.10 tolerated(0.14) benign(0.001) TCGA-EE-A2GH-06 11 61630767 61630767 C T FADS2 Missense_Mutation p.H332Y 0.12 tolerated(0.23) benign(0.324) TCGA-EE-A2GH-06 11 65811132 65811132 G A GAL3ST3 Missense_Mutation p.P48S 0.21 tolerated(0.47) benign(0.005) TCGA-EE-A2GH-06 11 69933904 69933904 G A ANO1 Missense_Mutation p.G52D 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 11 70331609 70331609 G A SHANK2 Missense_Mutation p.L1598F 0.11 tolerated(0.4) benign(0.022) TCGA-EE-A2GH-06 11 77931468 77931468 G A GAB2 Missense_Mutation p.P595L 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GH-06 11 7817774 7817774 G A OR5P2 Missense_Mutation p.S239F 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GH-06 11 82868661 82868661 C T PCF11 Silent p.A60A 0.09 TCGA-EE-A2GH-06 11 92086290 92086290 C T FAT3 Missense_Mutation p.P338S 0.16 benign(0.063) TCGA-EE-A2GH-06 11 99827677 99827677 G A CNTN5 Silent p.V271V 0.09 TCGA-EE-A2GH-06 12 101477520 101477520 G A ANO4 Missense_Mutation p.G452E 0.16 tolerated(0.09) probably_damaging(1) TCGA-EE-A2GH-06 12 10224049 10224049 C T CLEC1A Silent p.G242G 0.18 TCGA-EE-A2GH-06 12 122396265 122396265 G A WDR66 Silent p.K606K 0.13 TCGA-EE-A2GH-06 12 122622103 122622103 G A MLXIP Missense_Mutation p.G707E 0.22 tolerated(0.06) benign(0.23) TCGA-EE-A2GH-06 12 122622104 122622104 G A MLXIP Silent p.G707G 0.22 TCGA-EE-A2GH-06 12 125834175 125834175 G A TMEM132B Missense_Mutation p.R77Q 0.20 tolerated(0.38) possibly_damaging(0.745) TCGA-EE-A2GH-06 12 46765012 46765012 G A SLC38A2 Missense_Mutation p.S22F 0.18 deleterious(0) probably_damaging(0.923) TCGA-EE-A2GH-06 12 4735856 4735856 G A AKAP3 Missense_Mutation p.H738Y 0.15 tolerated(0.14) benign(0.093) TCGA-EE-A2GH-06 12 4919960 4919960 C T KCNA6 Silent p.L251L 0.09 TCGA-EE-A2GH-06 12 53240070 53240070 C T KRT78 Missense_Mutation p.D223N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 12 54971043 54971043 C T PDE1B Silent p.S514S 0.12 TCGA-EE-A2GH-06 12 5603651 5603651 G A NTF3 Missense_Mutation p.E104K 0.15 tolerated(0.44) benign(0.015) TCGA-EE-A2GH-06 12 57397878 57397878 G A ZBTB39 Missense_Mutation p.S275F 0.15 deleterious(0.02) possibly_damaging(0.602) TCGA-EE-A2GH-06 12 57574473 57574473 C T LRP1 Nonsense_Mutation p.Q1804* 0.12 TCGA-EE-A2GH-06 12 57643378 57643378 G A STAC3 Silent p.F14F 0.13 TCGA-EE-A2GH-06 12 65004498 65004498 A G RASSF3 Missense_Mutation p.Q29R 0.15 tolerated(0.25) benign(0.012) TCGA-EE-A2GH-06 12 8329751 8329751 C T ZNF705A Missense_Mutation p.P159S 0.16 tolerated(0.17) benign(0) TCGA-EE-A2GH-06 12 97137626 97137626 C T C12orf55 Missense_Mutation p.P2499S 0.23 tolerated(0.42) benign(0) TCGA-EE-A2GH-06 13 25373588 25373588 C T RNF17 Silent p.I485I 0.10 TCGA-EE-A2GH-06 13 25881994 25881994 C T NUPL1 Missense_Mutation p.P53L 0.12 deleterious(0.01) benign(0.273) TCGA-EE-A2GH-06 13 28136618 28136618 G A LNX2 Nonsense_Mutation p.R386* 0.15 TCGA-EE-A2GH-06 13 29005419 29005419 C T FLT1 Missense_Mutation p.R281Q 0.16 deleterious(0.01) possibly_damaging(0.845) TCGA-EE-A2GH-06 13 37269436 37269436 C T SERTM1 Missense_Mutation p.S74F 0.13 deleterious_low_confidence(0) benign(0.143) TCGA-EE-A2GH-06 13 67205452 67205452 C T PCDH9 Missense_Mutation p.G1077E 0.14 tolerated(0.4) benign(0.368) TCGA-EE-A2GH-06 13 99966405 99966405 C T UBAC2 Silent p.V148V 0.16 TCGA-EE-A2GH-06 14 107283032 107283032 C T IGHV7-81 Silent p.V37V 0.15 TCGA-EE-A2GH-06 14 20248894 20248894 G A OR4M1 Missense_Mutation p.R138Q 0.10 tolerated(0.17) benign(0.001) TCGA-EE-A2GH-06 14 20389533 20389533 C T OR4K5 Silent p.F256F 0.11 TCGA-EE-A2GH-06 14 20404405 20404405 G A OR4K1 Missense_Mutation p.E194K 0.09 tolerated(0.34) benign(0.005) TCGA-EE-A2GH-06 14 20404433 20404433 G A OR4K1 Missense_Mutation p.S203N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GH-06 14 20815040 20815040 G A PARP2 Missense_Mutation p.G111R 0.12 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GH-06 14 22293998 22293998 C T TRAV10 Silent p.I34I 0.13 TCGA-EE-A2GH-06 14 22433754 22433754 G A TRAV12-3 Missense_Mutation p.V7I 0.29 tolerated(0.13) unknown(0) TCGA-EE-A2GH-06 14 24884117 24884117 C T NYNRIN Silent p.I1054I 0.12 TCGA-EE-A2GH-06 14 31539121 31539121 G T AP4S1 Missense_Mutation p.V71F 0.16 tolerated(0.1) benign(0.212) TCGA-EE-A2GH-06 14 33684575 33684575 G A NPAS3 Missense_Mutation p.G110R 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2GH-06 14 42355964 42355964 C T LRFN5 Missense_Mutation p.P46S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 14 45636401 45636401 C T FANCM Intron 0.31 TCGA-EE-A2GH-06 14 64909104 64909104 A T MTHFD1 Missense_Mutation p.H707L 0.12 deleterious(0) probably_damaging(0.925) TCGA-EE-A2GH-06 14 64909105 64909105 C T MTHFD1 Silent p.H707H 0.12 TCGA-EE-A2GH-06 14 65241884 65241884 C T SPTB Missense_Mutation p.G1601S 0.16 tolerated(1) benign(0.016) TCGA-EE-A2GH-06 14 74759505 74759505 G A ABCD4 Silent p.F294F 0.16 TCGA-EE-A2GH-06 14 76156614 76156614 C T TTLL5 Missense_Mutation p.H151Y 0.16 deleterious(0.01) possibly_damaging(0.533) TCGA-EE-A2GH-06 14 94929442 94929442 G T SERPINA9 Silent p.P432P 0.19 TCGA-EE-A2GH-06 15 23811099 23811099 C T MKRN3 Missense_Mutation p.P57L 0.17 deleterious(0.01) benign(0.108) TCGA-EE-A2GH-06 15 38229151 38229151 G A TMCO5A Missense_Mutation p.E82K 0.18 tolerated(0.17) possibly_damaging(0.662) TCGA-EE-A2GH-06 15 39883391 39883391 G A THBS1 Splice_Site p.X752_splice 0.14 TCGA-EE-A2GH-06 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.14 TCGA-EE-A2GH-06 15 49776595 49776595 G A FGF7 Missense_Mutation p.G160E 0.20 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GH-06 15 51791364 51791364 A G DMXL2 Silent p.L1353L 0.17 TCGA-EE-A2GH-06 15 55790615 55790615 C T DYX1C1 5'UTR 0.27 TCGA-EE-A2GH-06 15 66850213 66850213 C T LCTL Missense_Mutation p.G257R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 15 66855937 66855937 C T LCTL Missense_Mutation p.E133K 0.19 tolerated(0.86) benign(0.001) TCGA-EE-A2GH-06 15 74219544 74219544 C T LOXL1 Silent p.A140A 0.19 TCGA-EE-A2GH-06 15 74948195 74948195 G A EDC3 Silent p.S233S 0.16 TCGA-EE-A2GH-06 15 76225310 76225310 A C FBXO22 Missense_Mutation p.N360T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GH-06 15 90118964 90118964 C T TICRR Silent p.F49F 0.26 TCGA-EE-A2GH-06 16 15716921 15716921 G A KIAA0430 Missense_Mutation p.S777L 0.13 tolerated(0.25) benign(0.002) TCGA-EE-A2GH-06 16 17235110 17235110 A T XYLT1 Missense_Mutation p.F496Y 0.15 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A2GH-06 16 19498601 19498601 C T TMC5 Silent p.F842F 0.11 TCGA-EE-A2GH-06 16 22152927 22152927 G A VWA3A Missense_Mutation p.G803E 0.20 tolerated(1) benign(0.001) TCGA-EE-A2GH-06 16 29825239 29825239 C T PRRT2 Silent p.F288F 0.10 TCGA-EE-A2GH-06 16 3274343 3274343 C T ZNF200 Missense_Mutation p.R246Q 0.17 tolerated(0.56) benign(0.016) TCGA-EE-A2GH-06 16 4833519 4833519 G A SEPT12 Missense_Mutation p.P224S 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GH-06 16 5110293 5110293 C T C16orf89 Missense_Mutation p.G168E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 16 78062066 78062066 G A CLEC3A Missense_Mutation p.E69K 0.18 deleterious(0.02) possibly_damaging(0.751) TCGA-EE-A2GH-06 17 10357112 10357112 C T MYH4 Missense_Mutation p.E928K 0.14 deleterious(0.02) benign(0.021) TCGA-EE-A2GH-06 17 10401063 10401063 C T MYH1 Silent p.R1451R 0.15 TCGA-EE-A2GH-06 17 10408207 10408207 C T MYH1 Missense_Mutation p.E871K 0.17 deleterious(0.02) possibly_damaging(0.545) TCGA-EE-A2GH-06 17 11701013 11701013 G A DNAH9 Missense_Mutation p.E2775K 0.19 benign(0.028) TCGA-EE-A2GH-06 17 18862036 18862036 C T SLC5A10 Silent p.F51F 0.13 TCGA-EE-A2GH-06 17 21201765 21201765 G A MAP2K3 Missense_Mutation p.M30I 0.09 tolerated(0.27) benign(0) TCGA-EE-A2GH-06 17 2935735 2935735 C T RAP1GAP2 3'UTR 0.19 TCGA-EE-A2GH-06 17 3101635 3101635 A T OR1A2 Missense_Mutation p.M275L 0.12 tolerated(0.12) possibly_damaging(0.644) TCGA-EE-A2GH-06 17 32683483 32683483 G A CCL13 5'UTR 0.14 TCGA-EE-A2GH-06 17 33690204 33690204 G A SLFN11 Missense_Mutation p.P208L 0.19 deleterious(0.03) possibly_damaging(0.698) TCGA-EE-A2GH-06 17 34894104 34894104 T C PIGW Missense_Mutation p.L385P 0.14 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GH-06 17 40955691 40955691 C T CNTD1 Nonsense_Mutation p.Q75* 0.18 TCGA-EE-A2GH-06 17 45201273 45201273 G A CDC27 Silent p.L744L 0.12 TCGA-EE-A2GH-06 17 46700460 46700460 G A HOXB9 Silent p.S185S 0.10 TCGA-EE-A2GH-06 17 46700464 46700464 G C HOXB9 Missense_Mutation p.S184C 0.09 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GH-06 17 4686202 4686202 G A TM4SF5 Missense_Mutation p.R150H 0.17 tolerated(0.44) benign(0.004) TCGA-EE-A2GH-06 17 48153710 48153710 C T ITGA3 Silent p.L565L 0.10 TCGA-EE-A2GH-06 17 48271394 48271394 G A COL1A1 Silent p.A559A 0.15 TCGA-EE-A2GH-06 17 48271395 48271395 G A COL1A1 Missense_Mutation p.A559V 0.15 unknown(0) TCGA-EE-A2GH-06 17 54431374 54431374 C T ANKFN1 Missense_Mutation p.L193F 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GH-06 17 5461922 5461922 C T NLRP1 Silent p.R698R 0.18 TCGA-EE-A2GH-06 17 56682489 56682489 C T TEX14 Missense_Mutation p.E402K 0.22 tolerated(1) benign(0.001) TCGA-EE-A2GH-06 17 61573825 61573825 C T ACE Missense_Mutation p.P1151S 0.20 deleterious(0.03) possibly_damaging(0.569) TCGA-EE-A2GH-06 17 64219823 64219823 G A APOH Silent p.V136V 0.14 TCGA-EE-A2GH-06 17 65021058 65021058 G A CACNG4 Silent p.R129R 0.12 TCGA-EE-A2GH-06 17 66937058 66937058 G A ABCA8 Missense_Mutation p.P48S 0.14 tolerated(1) benign(0.006) TCGA-EE-A2GH-06 17 74004938 74004938 C T EVPL Missense_Mutation p.E1450K 0.17 deleterious(0) benign(0.269) TCGA-EE-A2GH-06 17 7476160 7476160 A G EIF4A1 Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(0.07) benign(0.03) TCGA-EE-A2GH-06 17 7605081 7605081 G A WRAP53 Missense_Mutation p.R310Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GH-06 17 79060261 79060261 C T BAIAP2 Nonsense_Mutation p.Q124* 0.10 TCGA-EE-A2GH-06 17 79180936 79180936 A T AZI1 Missense_Mutation p.W126R 0.18 deleterious(0.02) benign(0.028) TCGA-EE-A2GH-06 17 8141515 8141515 G A CTC1 Missense_Mutation p.P161S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 17 8452063 8452063 G A MYH10 Missense_Mutation p.S321F 0.14 probably_damaging(0.998) TCGA-EE-A2GH-06 18 19359612 19359612 C T MIB1 Missense_Mutation p.H292Y 0.13 tolerated(0.09) possibly_damaging(0.624) TCGA-EE-A2GH-06 18 21121366 21121366 G A NPC1 Silent p.T759T 0.35 TCGA-EE-A2GH-06 18 21121367 21121367 G A NPC1 Missense_Mutation p.T759I 0.35 tolerated(0.09) benign(0.206) TCGA-EE-A2GH-06 18 28711548 28711548 G A DSC1 Intron 0.27 TCGA-EE-A2GH-06 18 28993088 28993088 C T DSG4 Missense_Mutation p.P904S 0.16 tolerated(0.51) benign(0.098) TCGA-EE-A2GH-06 18 30092272 30092272 G A WBP11P1 RNA 0.22 TCGA-EE-A2GH-06 18 30093008 30093008 C T WBP11P1 RNA 0.19 TCGA-EE-A2GH-06 18 44560016 44560016 A G TCEB3B Silent p.N540N 0.09 TCGA-EE-A2GH-06 18 52265273 52265273 C T DYNAP Missense_Mutation p.S177L 0.15 deleterious(0.01) unknown(0) TCGA-EE-A2GH-06 18 59221488 59221488 G A CDH20 Missense_Mutation p.E656K 0.19 deleterious(0.01) benign(0.246) TCGA-EE-A2GH-06 18 61449741 61449741 C T SERPINB7 Silent p.G45G 0.15 TCGA-EE-A2GH-06 18 6977880 6977880 G A LAMA1 Missense_Mutation p.T2064I 0.17 tolerated(0.39) benign(0.385) TCGA-EE-A2GH-06 18 73130777 73130777 G A SMIM21 Missense_Mutation p.S75F 0.13 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A2GH-06 19 11406992 11406992 C T TSPAN16 Missense_Mutation p.P7S 0.13 tolerated(0.25) possibly_damaging(0.593) TCGA-EE-A2GH-06 19 12874530 12874530 G A HOOK2 Silent p.S630S 0.18 TCGA-EE-A2GH-06 19 17091490 17091490 C T CPAMD8 Missense_Mutation p.E515K 0.17 tolerated(0.29) benign(0.012) TCGA-EE-A2GH-06 19 17628187 17628187 C T PGLS Missense_Mutation p.P163S 0.18 deleterious(0.01) benign(0.035) TCGA-EE-A2GH-06 19 19655900 19655900 A T CILP2 Missense_Mutation p.H849L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GH-06 19 19822283 19822283 G A ZNF14 Nonsense_Mutation p.R603* 0.21 TCGA-EE-A2GH-06 19 22574608 22574608 G A ZNF98 Missense_Mutation p.L477F 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GH-06 19 31025765 31025765 G A ZNF536 Missense_Mutation p.E728K 0.12 tolerated(0.09) benign(0.427) TCGA-EE-A2GH-06 19 31768064 31768064 G A TSHZ3 Silent p.L879L 0.28 TCGA-EE-A2GH-06 19 3275934 3275934 G A CELF5 Missense_Mutation p.V159I 0.18 tolerated(0.07) benign(0.349) TCGA-EE-A2GH-06 19 32954296 32954296 G C DPY19L3 Silent p.V449V 0.14 TCGA-EE-A2GH-06 19 37975975 37975975 C T ZNF570 Missense_Mutation p.S484F 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2GH-06 19 42819392 42819392 C T TMEM145 Silent p.F186F 0.14 TCGA-EE-A2GH-06 19 43243087 43243087 C T PSG3 Silent p.K73K 0.18 TCGA-EE-A2GH-06 19 44636489 44636489 G A ZNF225 Silent p.G574G 0.13 TCGA-EE-A2GH-06 19 49971807 49971807 C T ALDH16A1 Missense_Mutation p.A703V 0.18 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A2GH-06 19 49971808 49971808 C T ALDH16A1 Silent p.A703A 0.18 TCGA-EE-A2GH-06 19 50333986 50333986 G A MED25 Missense_Mutation p.G315R 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2GH-06 19 50453290 50453290 G A SIGLEC11 Silent p.P678P 0.15 TCGA-EE-A2GH-06 19 50774791 50774791 C T MYH14 Silent p.S1053S 0.23 TCGA-EE-A2GH-06 19 51771891 51771891 C T SIGLECL1 3'UTR 0.26 TCGA-EE-A2GH-06 19 54224374 54224374 C T MIR517B RNA 0.22 TCGA-EE-A2GH-06 19 54261483 54261483 G T MIR519A2 5'Flank 0.18 TCGA-EE-A2GH-06 19 55048179 55048179 C T KIR3DX1 Missense_Mutation p.S249L 0.21 tolerated(0.12) benign(0.101) TCGA-EE-A2GH-06 19 55378106 55378106 G A KIR3DL2 Missense_Mutation p.E430K 0.13 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A2GH-06 19 56370559 56370559 G A NLRP4 Silent p.R600R 0.12 TCGA-EE-A2GH-06 19 6432137 6432137 G A SLC25A41 Silent p.L96L 0.20 TCGA-EE-A2GH-06 19 9059445 9059445 G T MUC16 Missense_Mutation p.P9334Q 0.17 unknown(0) TCGA-EE-A2GH-06 19 9065737 9065737 G A MUC16 Nonsense_Mutation p.Q7237* 0.15 TCGA-EE-A2GH-06 19 9077420 9077420 C T MUC16 Missense_Mutation p.M3342I 0.21 unknown(0) TCGA-EE-A2GH-06 19 9086816 9086816 C T MUC16 Missense_Mutation p.E1667K 0.25 unknown(0) TCGA-EE-A2GH-06 19 9451775 9451775 C T ZNF559 Intron 0.12 TCGA-EE-A2GH-06 1 107867110 107867110 C T NTNG1 Silent p.T151T 0.16 TCGA-EE-A2GH-06 1 114340355 114340355 G A RSBN1 Missense_Mutation p.P336L 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GH-06 1 115231288 115231288 C T AMPD1 Missense_Mutation p.E70K 0.24 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A2GH-06 1 12942960 12942960 C A PRAMEF4 Missense_Mutation p.G86W 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 1 152733030 152733030 C T KPRP Silent p.G322G 0.13 TCGA-EE-A2GH-06 1 153085179 153085179 G A SPRR2F Missense_Mutation p.P11S 0.12 unknown(0) TCGA-EE-A2GH-06 1 153085186 153085186 G A SPRR2F Silent p.C8C 0.11 TCGA-EE-A2GH-06 1 155874167 155874167 G A RIT1 Nonsense_Mutation p.R139* 0.11 TCGA-EE-A2GH-06 1 158746811 158746811 G A OR6N2 Silent p.F205F 0.19 TCGA-EE-A2GH-06 1 158906920 158906920 A G PYHIN1 Missense_Mutation p.T74A 0.15 tolerated(0.77) benign(0.036) TCGA-EE-A2GH-06 1 160523806 160523806 T C CD84 Silent p.E173E 0.16 TCGA-EE-A2GH-06 1 161967642 161967642 C T OLFML2B Missense_Mutation p.E483K 0.12 tolerated(0.14) possibly_damaging(0.479) TCGA-EE-A2GH-06 1 166926005 166926005 C T ILDR2 Missense_Mutation p.G155E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 1 177001730 177001730 C T ASTN1 Missense_Mutation p.E243K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A2GH-06 1 190067226 190067226 C T BRINP3 Silent p.R741R 0.19 TCGA-EE-A2GH-06 1 196197318 196197318 G A KCNT2 3'UTR 0.29 TCGA-EE-A2GH-06 1 198685931 198685931 G A PTPRC Missense_Mutation p.G471E 0.15 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2GH-06 1 201061190 201061190 G A CACNA1S Missense_Mutation p.P151S 0.16 tolerated_low_confidence(0.21) possibly_damaging(0.474) TCGA-EE-A2GH-06 1 203143595 203143595 G A MYBPH Silent p.A157A 0.13 TCGA-EE-A2GH-06 1 206327476 206327476 A G CTSE Missense_Mutation p.N222S 0.16 tolerated(0.05) benign(0.02) TCGA-EE-A2GH-06 1 207680083 207680083 A T CR1 Missense_Mutation p.D109V 0.12 deleterious(0.03) possibly_damaging(0.819) TCGA-EE-A2GH-06 1 207680085 207680085 C T CR1 Missense_Mutation p.P110S 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A2GH-06 1 20811832 20811832 G A CAMK2N1 Missense_Mutation p.P14L 0.31 tolerated_low_confidence(0.16) benign(0.017) TCGA-EE-A2GH-06 1 20811833 20811833 G A CAMK2N1 Missense_Mutation p.P14S 0.31 tolerated_low_confidence(0.3) benign(0.011) TCGA-EE-A2GH-06 1 230839065 230839065 C T AGT Missense_Mutation p.S427N 0.16 tolerated(0.3) benign(0.035) TCGA-EE-A2GH-06 1 232650696 232650696 G A SIPA1L2 Silent p.L130L 0.13 TCGA-EE-A2GH-06 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.16 probably_damaging(0.992) TCGA-EE-A2GH-06 1 248403001 248403001 C T OR2M4 Silent p.F257F 0.18 TCGA-EE-A2GH-06 1 248616437 248616437 C T OR2T2 Silent p.F113F 0.07 TCGA-EE-A2GH-06 1 248685402 248685402 G A OR2G6 Missense_Mutation p.G152D 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GH-06 1 27950438 27950438 C T FGR Intron 0.20 TCGA-EE-A2GH-06 1 34192215 34192215 C T CSMD2 Missense_Mutation p.D774N 0.19 tolerated(0.14) probably_damaging(0.986) TCGA-EE-A2GH-06 1 3599693 3599693 G A TP73 Silent p.T45T 0.15 TCGA-EE-A2GH-06 1 39801578 39801578 C T MACF1 Intron 0.19 TCGA-EE-A2GH-06 1 74670196 74670196 C T FPGT Silent p.P155P 0.18 TCGA-EE-A2GH-06 20 10603716 10603716 G A SLX4IP Missense_Mutation p.D306N 0.20 tolerated(0.05) benign(0.067) TCGA-EE-A2GH-06 20 18794707 18794707 G A SCP2D1 Missense_Mutation p.R83Q 0.17 tolerated(1) benign(0) TCGA-EE-A2GH-06 20 19261711 19261711 G A SLC24A3 Missense_Mutation p.S84N 0.21 tolerated(0.63) benign(0.045) TCGA-EE-A2GH-06 20 30486300 30486300 C T TTLL9 Silent p.F46F 0.20 TCGA-EE-A2GH-06 20 34021723 34021723 G A GDF5 Missense_Mutation p.S497L 0.16 deleterious(0) probably_damaging(0.943) TCGA-EE-A2GH-06 20 34059970 34059976 AACCCAG - CEP250 Frame_Shift_Del p.I348Mfs*10 0.11 TCGA-EE-A2GH-06 20 40709572 40709572 C T PTPRT Missense_Mutation p.E1425K 0.19 deleterious(0.01) benign(0.423) TCGA-EE-A2GH-06 20 41306689 41306689 C T PTPRT Missense_Mutation p.E324K 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GH-06 20 43738604 43738604 C T WFDC5 3'UTR 0.18 TCGA-EE-A2GH-06 20 45217888 45217888 C T SLC13A3 Nonsense_Mutation p.W309* 0.16 TCGA-EE-A2GH-06 20 45217889 45217889 C T SLC13A3 Nonsense_Mutation p.W309* 0.15 TCGA-EE-A2GH-06 20 52198351 52198351 C T ZNF217 Missense_Mutation p.G339S 0.10 tolerated(1) benign(0.003) TCGA-EE-A2GH-06 20 55033446 55033446 G A CASS4 Silent p.R668R 0.09 TCGA-EE-A2GH-06 20 55049738 55049738 T C RTFDC1 Missense_Mutation p.Y57H 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GH-06 20 9498771 9498771 C T LAMP5 Missense_Mutation p.T187I 0.17 deleterious(0.05) possibly_damaging(0.632) TCGA-EE-A2GH-06 21 15889352 15889352 C T SAMSN1 Missense_Mutation p.G115E 0.11 tolerated(1) benign(0.013) TCGA-EE-A2GH-06 21 27852714 27852714 C T CYYR1 Missense_Mutation p.V71I 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A2GH-06 21 31971130 31971130 C T KRTAP6-2 Missense_Mutation p.G22S 0.13 unknown(0) TCGA-EE-A2GH-06 21 41385159 41385159 C T DSCAM Silent p.P1947P 0.20 TCGA-EE-A2GH-06 21 43833612 43833612 G A UBASH3A Missense_Mutation p.S216N 0.18 tolerated(0.55) benign(0.182) TCGA-EE-A2GH-06 21 43962552 43962552 C T SLC37A1 Silent p.S175S 0.09 TCGA-EE-A2GH-06 22 24487737 24487737 C T CABIN1 Silent p.A1242A 0.12 TCGA-EE-A2GH-06 22 38494448 38494448 C T BAIAP2L2 Silent p.K106K 0.13 TCGA-EE-A2GH-06 22 45929715 45929715 C T FBLN1 Missense_Mutation p.R241C 0.17 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GH-06 22 46832145 46832145 C T CELSR1 Missense_Mutation p.G1483D 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 22 46832146 46832146 C T CELSR1 Missense_Mutation p.G1483S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 22 50727255 50727255 G A PLXNB2 Missense_Mutation p.L433F 0.21 tolerated(0.71) possibly_damaging(0.588) TCGA-EE-A2GH-06 2 108881316 108881316 C T SULT1C3 Silent p.F219F 0.30 TCGA-EE-A2GH-06 2 158300366 158300366 C T CYTIP Missense_Mutation p.R56Q 0.19 tolerated(0.06) possibly_damaging(0.836) TCGA-EE-A2GH-06 2 159028671 159028671 T A CCDC148 Missense_Mutation p.Q577L 0.18 tolerated(0.38) benign(0.003) TCGA-EE-A2GH-06 2 167055757 167055757 C T SCN9A Missense_Mutation p.E1787K 0.18 tolerated(0.16) possibly_damaging(0.624) TCGA-EE-A2GH-06 2 170076975 170076975 A C LRP2 Missense_Mutation p.D1879E 0.16 probably_damaging(0.999) TCGA-EE-A2GH-06 2 179489236 179489236 C G TTN Missense_Mutation p.C14924S 0.14 TCGA-EE-A2GH-06 2 179600567 179600567 G A TTN Missense_Mutation p.A4869V 0.13 TCGA-EE-A2GH-06 2 179604839 179604839 C T TTN Missense_Mutation p.G4374E 0.20 TCGA-EE-A2GH-06 2 179613553 179613553 G A TTN Intron 0.25 TCGA-EE-A2GH-06 2 179615864 179615864 C T TTN Intron 0.26 TCGA-EE-A2GH-06 2 18113781 18113781 C T KCNS3 3'UTR 0.25 TCGA-EE-A2GH-06 2 183066287 183066287 C T PDE1A Splice_Site p.X351_splice 0.16 TCGA-EE-A2GH-06 2 196602645 196602645 T G DNAH7 Nonstop_Mutation p.*4025Yext*35 0.23 TCGA-EE-A2GH-06 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.22 TCGA-EE-A2GH-06 2 197964578 197964578 C T ANKRD44 Silent p.L354L 0.19 TCGA-EE-A2GH-06 2 207170215 207170215 C T ZDBF2 Silent p.I321I 0.21 TCGA-EE-A2GH-06 2 220104817 220104817 C T GLB1L Splice_Site p.X183_splice 0.21 TCGA-EE-A2GH-06 2 228148999 228148999 G A COL4A3 Missense_Mutation p.G940E 0.15 unknown(0) TCGA-EE-A2GH-06 2 234360705 234360705 C T DGKD Silent p.L755L 0.22 TCGA-EE-A2GH-06 2 242814518 242814518 C T CXXC11 Missense_Mutation p.H271Y 0.15 deleterious(0.01) benign(0.329) TCGA-EE-A2GH-06 2 32475631 32475631 C T NLRC4 Silent p.R434R 0.20 TCGA-EE-A2GH-06 2 32475632 32475632 C T NLRC4 Missense_Mutation p.R434K 0.20 tolerated(0.07) benign(0.345) TCGA-EE-A2GH-06 2 43819106 43819106 G A THADA Silent p.I52I 0.16 TCGA-EE-A2GH-06 2 60773118 60773118 C T BCL11A Missense_Mutation p.E125K 0.18 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GH-06 2 71801494 71801494 G A DYSF Missense_Mutation p.G1132E 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GH-06 3 107491624 107491624 G A BBX Silent p.K352K 0.23 TCGA-EE-A2GH-06 3 112358346 112358346 G A CCDC80 Missense_Mutation p.S136F 0.18 deleterious(0) possibly_damaging(0.831) TCGA-EE-A2GH-06 3 121981060 121981060 C T CASR Missense_Mutation p.P393L 0.15 tolerated(0.07) benign(0.026) TCGA-EE-A2GH-06 3 124438240 124438240 C T RP11-71H17.7 5'Flank 0.21 TCGA-EE-A2GH-06 3 140277565 140277565 C T CLSTN2 Missense_Mutation p.T636I 0.14 deleterious(0.05) benign(0.269) TCGA-EE-A2GH-06 3 143371161 143371161 C G SLC9A9 Missense_Mutation p.D231H 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A2GH-06 3 169099050 169099050 G A MECOM Silent p.I124I 0.11 TCGA-EE-A2GH-06 3 19575176 19575176 C T KCNH8 Missense_Mutation p.P970L 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GH-06 3 26751095 26751095 G A LRRC3B 5'UTR 0.17 TCGA-EE-A2GH-06 3 48623609 48623609 C T COL7A1 Missense_Mutation p.M1207I 0.20 unknown(0) TCGA-EE-A2GH-06 3 54930733 54930733 C T CACNA2D3 Intron 0.26 TCGA-EE-A2GH-06 3 62063909 62063909 G A PTPRG Missense_Mutation p.G198R 0.12 tolerated(0.36) possibly_damaging(0.742) TCGA-EE-A2GH-06 3 79639059 79639059 C T ROBO1 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0) TCGA-EE-A2GH-06 3 9034642 9034642 G A SRGAP3 Nonsense_Mutation p.Q836* 0.24 TCGA-EE-A2GH-06 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.19 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2GH-06 3 9486919 9486919 G T SETD5 Nonsense_Mutation p.E459* 0.20 TCGA-EE-A2GH-06 3 97596100 97596100 C T CRYBG3 Missense_Mutation p.T73I 0.20 tolerated_low_confidence(0.09) benign(0.004) TCGA-EE-A2GH-06 4 146461204 146461204 C T SMAD1 Nonsense_Mutation p.Q217* 0.28 TCGA-EE-A2GH-06 4 147824778 147824778 C T TTC29 Silent p.K168K 0.12 TCGA-EE-A2GH-06 4 148406839 148406839 A C EDNRA Missense_Mutation p.E2D 0.13 tolerated_low_confidence(0.36) benign(0.001) TCGA-EE-A2GH-06 4 158091772 158091772 G A GLRB Silent p.A462A 0.20 TCGA-EE-A2GH-06 4 165962087 165962087 G A TRIM60 Missense_Mutation p.R288K 0.11 tolerated(0.92) benign(0.033) TCGA-EE-A2GH-06 4 166976276 166976276 G A TLL1 Missense_Mutation p.G525R 0.18 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GH-06 4 189068016 189068016 C T TRIML1 Silent p.L299L 0.14 TCGA-EE-A2GH-06 4 22749662 22749662 G A GBA3 Missense_Mutation p.D344N 0.15 tolerated(0.33) benign(0.001) TCGA-EE-A2GH-06 4 74364937 74364937 G A AFM Missense_Mutation p.E466K 0.17 deleterious(0.01) benign(0.159) TCGA-EE-A2GH-06 4 80327846 80327846 C T GK2 Nonsense_Mutation p.W503* 0.17 TCGA-EE-A2GH-06 4 80327847 80327847 C T GK2 Nonsense_Mutation p.W503* 0.17 TCGA-EE-A2GH-06 4 86916516 86916516 C T ARHGAP24 Missense_Mutation p.S570F 0.17 deleterious(0) probably_damaging(0.926) TCGA-EE-A2GH-06 5 101834509 101834509 C T SLCO6A1 Missense_Mutation p.E14K 0.19 tolerated(0.42) benign(0.025) TCGA-EE-A2GH-06 5 137230154 137230154 G A PKD2L2 Missense_Mutation p.G127E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GH-06 5 138861189 138861189 C A TMEM173 Missense_Mutation p.W34L 0.14 tolerated(0.17) possibly_damaging(0.713) TCGA-EE-A2GH-06 5 139232060 139232060 G A NRG2 Missense_Mutation p.P501S 0.20 tolerated(0.31) possibly_damaging(0.908) TCGA-EE-A2GH-06 5 156894083 156894083 G A NIPAL4 Missense_Mutation p.D164N 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GH-06 5 156899974 156899974 G A NIPAL4 3'UTR 0.22 TCGA-EE-A2GH-06 5 162911176 162911176 A G HMMR Silent p.L629L 0.13 TCGA-EE-A2GH-06 5 38427313 38427313 G A EGFLAM Silent p.V671V 0.20 TCGA-EE-A2GH-06 5 56778079 56778079 G A ACTBL2 Silent p.I152I 0.30 TCGA-EE-A2GH-06 5 78347223 78347223 G A DMGDH Missense_Mutation p.A211V 0.16 deleterious(0.02) benign(0.434) TCGA-EE-A2GH-06 5 90025459 90025459 G A GPR98 Missense_Mutation p.G3476E 0.12 probably_damaging(0.972) TCGA-EE-A2GH-06 6 10587100 10587100 C T GCNT2 Intron 0.25 TCGA-EE-A2GH-06 6 109282894 109282894 G A ARMC2 Missense_Mutation p.E679K 0.11 tolerated(0.36) possibly_damaging(0.573) TCGA-EE-A2GH-06 6 116937862 116937862 G A RSPH4A Missense_Mutation p.G26R 0.17 tolerated_low_confidence(0.09) benign(0.068) TCGA-EE-A2GH-06 6 117130602 117130602 C T GPRC6A Missense_Mutation p.E125K 0.13 tolerated(0.07) benign(0.043) TCGA-EE-A2GH-06 6 129704350 129704350 C T LAMA2 Silent p.F1681F 0.08 TCGA-EE-A2GH-06 6 130762690 130762690 C T TMEM200A Missense_Mutation p.P375S 0.12 deleterious(0.02) possibly_damaging(0.79) TCGA-EE-A2GH-06 6 139488178 139488178 C T HECA Silent p.F343F 0.17 TCGA-EE-A2GH-06 6 152685982 152685982 C T SYNE1 Missense_Mutation p.S3382N 0.08 possibly_damaging(0.835) TCGA-EE-A2GH-06 6 159618564 159618564 G A FNDC1 Missense_Mutation p.E71K 0.21 deleterious(0) unknown(0) TCGA-EE-A2GH-06 6 160412350 160412350 C T IGF2R Missense_Mutation p.S95L 0.16 deleterious(0) benign(0.202) TCGA-EE-A2GH-06 6 25600727 25600727 C T LRRC16A Missense_Mutation p.P1102L 0.12 deleterious_low_confidence(0) benign(0.158) TCGA-EE-A2GH-06 6 26189177 26189177 C A HIST1H4D Missense_Mutation p.G43V 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GH-06 6 29231710 29231710 C T XXbac-BPG308J9.3 RNA 0.24 TCGA-EE-A2GH-06 6 31734072 31734072 G A VWA7 Silent p.D758D 0.17 TCGA-EE-A2GH-06 6 32362724 32362724 C T BTNL2 Nonsense_Mutation p.W386* 0.11 TCGA-EE-A2GH-06 6 32713147 32713147 C T HLA-DQA2 Silent p.F98F 0.10 TCGA-EE-A2GH-06 6 33382066 33382066 A T PHF1 Nonsense_Mutation p.K267* 0.21 TCGA-EE-A2GH-06 6 36652070 36652070 C T CDKN1A Silent p.A64A 0.21 TCGA-EE-A2GH-06 6 36759867 36759867 G A CPNE5 Silent p.V157V 0.21 TCGA-EE-A2GH-06 6 38029439 38029439 C T ZFAND3 Silent p.S61S 0.19 TCGA-EE-A2GH-06 6 47754302 47754302 G A OPN5 Missense_Mutation p.R61Q 0.23 tolerated(0.08) possibly_damaging(0.545) TCGA-EE-A2GH-06 6 47846719 47846719 C T PTCHD4 Missense_Mutation p.E621K 0.25 deleterious(0) benign(0.187) TCGA-EE-A2GH-06 6 49754181 49754181 C T PGK2 Missense_Mutation p.M240I 0.10 deleterious(0.01) benign(0.291) TCGA-EE-A2GH-06 6 76063289 76063289 C T FILIP1 Missense_Mutation p.D199N 0.11 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A2GH-06 6 84669579 84669579 C T CYB5R4 Silent p.I516I 0.15 TCGA-EE-A2GH-06 6 86324795 86324795 G A SYNCRIP Silent p.P517P 0.19 TCGA-EE-A2GH-06 7 100352875 100352875 G A ZAN Missense_Mutation p.E1051K 0.17 unknown(0) TCGA-EE-A2GH-06 7 100486221 100486221 C T SRRT 3'UTR 0.25 TCGA-EE-A2GH-06 7 106509477 106509477 G A PIK3CG Missense_Mutation p.G491R 0.22 tolerated(0.09) benign(0.274) TCGA-EE-A2GH-06 7 11450910 11450910 C T THSD7A Missense_Mutation p.G1241E 0.14 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GH-06 7 123594264 123594264 C T SPAM1 Missense_Mutation p.H214Y 0.19 tolerated(0.92) benign(0.027) TCGA-EE-A2GH-06 7 127255425 127255425 C T PAX4 Intron 0.29 TCGA-EE-A2GH-06 7 128645159 128645159 G A TNPO3 Missense_Mutation p.R203C 0.32 deleterious(0) benign(0.15) TCGA-EE-A2GH-06 7 129357144 129357144 C T NRF1 Missense_Mutation p.S384L 0.32 deleterious(0.01) possibly_damaging(0.487) TCGA-EE-A2GH-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GH-06 7 140500189 140500189 G A BRAF Missense_Mutation p.P318L 0.19 tolerated(0.21) benign(0.23) TCGA-EE-A2GH-06 7 140500190 140500190 G A BRAF Missense_Mutation p.P318S 0.19 tolerated(0.25) benign(0.018) TCGA-EE-A2GH-06 7 142143833 142143833 G A TRBV6-7 Nonsense_Mutation p.R55* 0.16 TCGA-EE-A2GH-06 7 142247165 142247165 C T TRBV7-3 Silent p.K97K 0.31 TCGA-EE-A2GH-06 7 146805303 146805303 G A CNTNAP2 Missense_Mutation p.M205I 0.27 tolerated(0.16) benign(0.009) TCGA-EE-A2GH-06 7 23731110 23731110 C T FAM221A Nonsense_Mutation p.Q178* 0.16 TCGA-EE-A2GH-06 7 27134177 27134177 G A HOXA1 Missense_Mutation p.P297L 0.15 tolerated(0.22) probably_damaging(0.992) TCGA-EE-A2GH-06 7 27134178 27134178 G A HOXA1 Missense_Mutation p.P297S 0.15 tolerated(0.56) probably_damaging(0.986) TCGA-EE-A2GH-06 7 30492184 30492184 G A NOD1 Silent p.F283F 0.29 TCGA-EE-A2GH-06 7 31146129 31146129 G A ADCYAP1R1 Missense_Mutation p.R441Q 0.29 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GH-06 7 34698124 34698124 G A NPSR1 Missense_Mutation p.E34K 0.31 tolerated(0.05) benign(0.318) TCGA-EE-A2GH-06 7 37780105 37780105 C T GPR141 Missense_Mutation p.S37F 0.10 tolerated(0.14) possibly_damaging(0.83) TCGA-EE-A2GH-06 7 43484933 43484933 C T HECW1 Missense_Mutation p.S721F 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GH-06 7 47336690 47336690 C G TNS3 Silent p.L1222L 0.14 TCGA-EE-A2GH-06 7 50611613 50611613 G A DDC Silent p.I57I 0.12 TCGA-EE-A2GH-06 7 51097008 51097008 C T COBL Silent p.E595E 0.19 TCGA-EE-A2GH-06 7 56136221 56136221 C T SUMF2 Silent p.F57F 0.15 TCGA-EE-A2GH-06 7 56136222 56136222 C T SUMF2 Silent p.L58L 0.15 TCGA-EE-A2GH-06 7 72664095 72664095 A G GTF2IRD2P1 RNA 0.11 TCGA-EE-A2GH-06 7 92207462 92207462 A C FAM133B Splice_Site p.X103_splice 0.19 TCGA-EE-A2GH-06 7 93101751 93101751 G A CALCR Missense_Mutation p.P140L 0.12 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2GH-06 7 94881390 94881390 C T PPP1R9A Silent p.T871T 0.11 TCGA-EE-A2GH-06 7 99366043 99366043 G A CYP3A4 Missense_Mutation p.P202S 0.17 deleterious(0.03) possibly_damaging(0.822) TCGA-EE-A2GH-06 8 10465634 10465634 C T RP1L1 Missense_Mutation p.E1992K 0.14 unknown(0) TCGA-EE-A2GH-06 8 11407687 11407687 G A BLK Missense_Mutation p.G130S 0.14 tolerated(1) benign(0.002) TCGA-EE-A2GH-06 8 11407688 11407688 G A BLK Missense_Mutation p.G130D 0.13 deleterious(0.02) benign(0.077) TCGA-EE-A2GH-06 8 125551345 125551345 C T TATDN1 5'Flank 0.47 TCGA-EE-A2GH-06 8 131861869 131861869 G A ADCY8 Silent p.F797F 0.41 TCGA-EE-A2GH-06 8 132051911 132051911 C T ADCY8 Silent p.E223E 0.22 TCGA-EE-A2GH-06 8 134125827 134125827 G A TG Silent p.R2578R 0.44 TCGA-EE-A2GH-06 8 144942235 144942235 G A EPPK1 Silent p.F1729F 0.33 TCGA-EE-A2GH-06 8 16921659 16921659 C T MICU3 Missense_Mutation p.R150C 0.12 tolerated(0.18) probably_damaging(0.972) TCGA-EE-A2GH-06 8 18258334 18258334 C T NAT2 Missense_Mutation p.S274F 0.16 tolerated(0.51) benign(0.05) TCGA-EE-A2GH-06 8 24256494 24256494 C T ADAMDEC1 Silent p.F290F 0.14 TCGA-EE-A2GH-06 8 27965461 27965461 G A ELP3 Missense_Mutation p.E121K 0.19 deleterious(0.05) probably_damaging(0.955) TCGA-EE-A2GH-06 8 3216823 3216823 G A CSMD1 Missense_Mutation p.A1052V 0.13 probably_damaging(0.999) TCGA-EE-A2GH-06 8 35406867 35406867 C G UNC5D Missense_Mutation p.P54R 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GH-06 8 39564371 39564371 C T ADAM18 Silent p.F655F 0.09 TCGA-EE-A2GH-06 8 39606852 39606852 C T ADAM2 Missense_Mutation p.A665T 0.30 tolerated(0.54) benign(0.004) TCGA-EE-A2GH-06 8 52336259 52336259 G A PXDNL Silent p.F557F 0.24 TCGA-EE-A2GH-06 8 55539411 55539411 G A RP1 Missense_Mutation p.G990E 0.11 tolerated(1) benign(0.001) TCGA-EE-A2GH-06 8 57219301 57219301 C T SDR16C5 Missense_Mutation p.G215E 0.22 tolerated(0.07) probably_damaging(1) TCGA-EE-A2GH-06 8 57353893 57353893 C T PENK Missense_Mutation p.E248K 0.38 deleterious(0.01) benign(0.082) TCGA-EE-A2GH-06 8 69621293 69621293 G A C8orf34 Missense_Mutation p.E436K 0.21 tolerated(0.43) benign(0.015) TCGA-EE-A2GH-06 8 74235016 74235016 C T RDH10 Silent p.R291R 0.25 TCGA-EE-A2GH-06 8 79627485 79627485 C T ZC2HC1A Missense_Mutation p.P245L 0.21 tolerated(0.06) benign(0.311) TCGA-EE-A2GH-06 8 86035759 86035759 C T LRRCC1 Missense_Mutation p.P348S 0.25 tolerated(0.31) benign(0.009) TCGA-EE-A2GH-06 9 105767754 105767754 G A CYLC2 Missense_Mutation p.D281N 0.12 tolerated(0.06) unknown(0) TCGA-EE-A2GH-06 9 114178582 114178582 G A KIAA0368 Silent p.V756V 0.11 TCGA-EE-A2GH-06 9 122075654 122075654 C T BRINP1 5'UTR 0.18 TCGA-EE-A2GH-06 9 124967023 124967023 G A LHX6 3'UTR 0.15 TCGA-EE-A2GH-06 9 130700157 130700157 C T DPM2 5'UTR 0.29 TCGA-EE-A2GH-06 9 131038489 131038489 C T SWI5 Missense_Mutation p.P22L 0.19 tolerated_low_confidence(0.27) possibly_damaging(0.713) TCGA-EE-A2GH-06 9 139945549 139945549 C T ENTPD2 Silent p.R193R 0.14 TCGA-EE-A2GH-06 9 14722205 14722205 C T CER1 Missense_Mutation p.E156K 0.17 deleterious(0.05) probably_damaging(0.971) TCGA-EE-A2GH-06 9 19573379 19573379 G A SLC24A2 Silent p.L439L 0.12 TCGA-EE-A2GH-06 9 78771975 78771975 G A PCSK5 Missense_Mutation p.G443R 0.22 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GH-06 9 79898328 79898328 C T VPS13A Missense_Mutation p.S1059L 0.22 deleterious(0.02) possibly_damaging(0.508) TCGA-EE-A2GH-06 X 102528897 102528897 C T TCEAL5 Missense_Mutation p.D199N 0.36 tolerated(0.12) benign(0.009) TCGA-EE-A2GH-06 X 105449924 105449924 G A MUM1L1 Missense_Mutation p.D167N 0.38 deleterious(0.01) possibly_damaging(0.679) TCGA-EE-A2GH-06 X 132445423 132445423 G A GPC4 Missense_Mutation p.A247V 0.32 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GH-06 X 135431858 135431858 G A GPR112 Missense_Mutation p.G1998E 0.38 tolerated(0.52) benign(0.013) TCGA-EE-A2GH-06 X 140994421 140994421 C T MAGEC1 Missense_Mutation p.P411S 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-EE-A2GH-06 X 140995392 140995392 G A MAGEC1 Silent p.E734E 0.29 TCGA-EE-A2GH-06 X 140995819 140995819 G A MAGEC1 Missense_Mutation p.E877K 0.33 deleterious(0) unknown(0) TCGA-EE-A2GH-06 X 151304040 151304040 G A MAGEA10 Missense_Mutation p.S18F 0.40 deleterious(0) possibly_damaging(0.449) TCGA-EE-A2GH-06 X 151821280 151821280 C T GABRQ Missense_Mutation p.P479S 0.30 tolerated(0.05) probably_damaging(0.97) TCGA-EE-A2GH-06 X 151935608 151935608 C T MAGEA3 Missense_Mutation p.D187N 0.25 tolerated(0.15) benign(0.132) TCGA-EE-A2GH-06 X 152159672 152159672 C T PNMA5 Silent p.R157R 0.36 TCGA-EE-A2GH-06 X 3238476 3238476 C T MXRA5 Silent p.Q1750Q 0.45 TCGA-EE-A2GH-06 X 35821039 35821039 C T MAGEB16 Silent p.I242I 0.31 TCGA-EE-A2GH-06 X 35971731 35971731 G A CXorf22 Missense_Mutation p.D357N 0.30 tolerated(0.31) benign(0.027) TCGA-EE-A2GH-06 X 54956310 54956310 C T TRO Silent p.G1051G 0.35 TCGA-EE-A2GH-06 X 55290330 55290330 C T PAGE3 Missense_Mutation p.G3R 0.22 tolerated(0.73) probably_damaging(0.995) TCGA-EE-A2GH-06 X 57358031 57358031 G A FAAH2 Missense_Mutation p.G138E 0.35 tolerated(0.09) possibly_damaging(0.729) TCGA-EE-A2GH-06 X 65411988 65411988 C T HEPH Silent p.L414L 0.36 TCGA-EE-A2GH-06 X 83128355 83128355 C T CYLC1 Silent p.F213F 0.24 TCGA-EE-A2GH-06 X 8433398 8433398 G A VCX3B 5'UTR 0.35 TCGA-EE-A2GI-06 10 102250017 102250017 G A SEC31B Missense_Mutation p.P905S 0.15 tolerated(0.09) benign(0.023) TCGA-EE-A2GI-06 10 102683838 102683838 C T FAM178A Silent p.F360F 0.29 TCGA-EE-A2GI-06 10 102683839 102683839 C T FAM178A Missense_Mutation p.L361F 0.30 tolerated(0.18) benign(0.019) TCGA-EE-A2GI-06 10 102763647 102763647 C T LZTS2 Silent p.V264V 0.19 TCGA-EE-A2GI-06 10 103339389 103339389 G A POLL Nonsense_Mutation p.R517* 0.26 TCGA-EE-A2GI-06 10 104175790 104175790 C T PSD Silent p.L247L 0.31 TCGA-EE-A2GI-06 10 104176757 104176757 G A PSD Silent p.D13D 0.40 TCGA-EE-A2GI-06 10 1042121 1042121 C T GTPBP4 Silent p.A133A 0.17 TCGA-EE-A2GI-06 10 104241783 104241783 G A ACTR1A Silent p.L300L 0.20 TCGA-EE-A2GI-06 10 107012637 107012637 G A SORCS3 Silent p.R1070R 0.18 TCGA-EE-A2GI-06 10 112342355 112342355 C T SMC3 Silent p.S253S 0.14 TCGA-EE-A2GI-06 10 112764468 112764468 C T SHOC2 Silent p.S359S 0.19 TCGA-EE-A2GI-06 10 113913263 113913263 G A GPAM 3'UTR 0.26 TCGA-EE-A2GI-06 10 115335754 115335754 T A HABP2 Missense_Mutation p.C108S 0.33 deleterious(0) possibly_damaging(0.893) TCGA-EE-A2GI-06 10 115962926 115962926 G A TDRD1 Missense_Mutation p.M264I 0.21 deleterious(0.01) possibly_damaging(0.584) TCGA-EE-A2GI-06 10 116061184 116061184 C T AFAP1L2 Missense_Mutation p.D491N 0.28 tolerated(0.2) probably_damaging(1) TCGA-EE-A2GI-06 10 118969418 118969418 G A KCNK18 Missense_Mutation p.E255K 0.30 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2GI-06 10 12129721 12129721 C T DHTKD1 Missense_Mutation p.P237L 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 10 12129723 12129723 C T DHTKD1 Missense_Mutation p.P238S 0.32 deleterious(0.01) possibly_damaging(0.733) TCGA-EE-A2GI-06 10 123325068 123325068 A G FGFR2 Missense_Mutation p.L87P 0.15 deleterious(0.04) possibly_damaging(0.8) TCGA-EE-A2GI-06 10 123842291 123842291 T C TACC2 Silent p.G92G 0.45 TCGA-EE-A2GI-06 10 123970852 123970852 G A TACC2 Missense_Mutation p.M2304I 0.34 benign(0.186) TCGA-EE-A2GI-06 10 124597015 124597015 G A CUZD1 Silent p.P168P 0.21 TCGA-EE-A2GI-06 10 125530445 125530445 C T CPXM2 Silent p.G363G 0.23 TCGA-EE-A2GI-06 10 126715566 126715566 G A CTBP2 Missense_Mutation p.R255C 0.20 deleterious_low_confidence(0) benign(0.432) TCGA-EE-A2GI-06 10 127724837 127724837 C T ADAM12 Missense_Mutation p.G806S 0.31 tolerated(0.68) benign(0.002) TCGA-EE-A2GI-06 10 131959077 131959077 C T GLRX3 Silent p.D98D 0.22 TCGA-EE-A2GI-06 10 131959078 131959078 C T GLRX3 Nonsense_Mutation p.R99* 0.23 TCGA-EE-A2GI-06 10 13224992 13224992 C T MCM10 Silent p.S331S 0.16 TCGA-EE-A2GI-06 10 134898504 134898504 C T GPR123 5'Flank 0.26 TCGA-EE-A2GI-06 10 135350649 135350649 G A CYP2E1 Missense_Mutation p.M350I 0.21 deleterious(0.02) benign(0.098) TCGA-EE-A2GI-06 10 15256408 15256408 C T FAM171A1 Silent p.L393L 0.28 TCGA-EE-A2GI-06 10 15828602 15828602 G A FAM188A Silent p.I358I 0.19 TCGA-EE-A2GI-06 10 17085910 17085910 G A CUBN Missense_Mutation p.R1249C 0.23 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A2GI-06 10 18828250 18828250 A C CACNB2 Missense_Mutation p.K527T 0.20 tolerated(0.17) benign(0.379) TCGA-EE-A2GI-06 10 26434394 26434394 G A MYO3A Silent p.L812L 0.32 TCGA-EE-A2GI-06 10 27537809 27537809 G A RP11-85G18.6 Intron 0.25 TCGA-EE-A2GI-06 10 28030293 28030293 G A MKX Missense_Mutation p.S110L 0.31 deleterious(0) possibly_damaging(0.488) TCGA-EE-A2GI-06 10 34606153 34606153 C T PARD3 Missense_Mutation p.D986N 0.22 tolerated(0.11) benign(0.008) TCGA-EE-A2GI-06 10 38240931 38240931 G A ZNF25 3'UTR 0.38 TCGA-EE-A2GI-06 10 409160 409160 G A DIP2C Nonsense_Mutation p.Q857* 0.24 TCGA-EE-A2GI-06 10 43623695 43623695 T A RET Nonsense_Mutation p.L1108* 0.09 TCGA-EE-A2GI-06 10 44052780 44052780 G A ZNF239 Silent p.L250L 0.31 TCGA-EE-A2GI-06 10 45487389 45487389 G A RASSF4 Missense_Mutation p.D282N 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GI-06 10 45644278 45644278 C T RP11-445N18.7 RNA 0.21 TCGA-EE-A2GI-06 10 45798957 45798957 G A OR13A1 Missense_Mutation p.P305L 0.24 deleterious(0.03) benign(0.32) TCGA-EE-A2GI-06 10 46999365 46999365 C T GPRIN2 Missense_Mutation p.S162F 0.23 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GI-06 10 48390435 48390435 C T RBP3 Missense_Mutation p.G148E 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GI-06 10 49395278 49395278 G A FRMPD2 Silent p.T741T 0.29 TCGA-EE-A2GI-06 10 50122129 50122129 G A LRRC18 Silent p.I24I 0.26 TCGA-EE-A2GI-06 10 50315832 50315832 C T VSTM4 Silent p.G88G 0.25 TCGA-EE-A2GI-06 10 50531678 50531678 G A C10orf71 Missense_Mutation p.G363E 0.38 tolerated(0.39) benign(0.251) TCGA-EE-A2GI-06 10 50686467 50686467 G A ERCC6 Missense_Mutation p.P740L 0.31 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GI-06 10 52575901 52575901 C T A1CF Missense_Mutation p.D344N 0.19 tolerated(0.07) possibly_damaging(0.836) TCGA-EE-A2GI-06 10 54011354 54011354 C T PRKG1 Silent p.F367F 0.17 TCGA-EE-A2GI-06 10 55663086 55663086 G A PCDH15 Missense_Mutation p.H1140Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GI-06 10 5567393 5567393 G A CALML3 Silent p.E115E 0.14 TCGA-EE-A2GI-06 10 61028373 61028373 C T FAM13C Silent p.Q294Q 0.29 TCGA-EE-A2GI-06 10 61414278 61414278 C T SLC16A9 Missense_Mutation p.G169E 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GI-06 10 61831957 61831957 C T ANK3 Silent p.K2894K 0.27 TCGA-EE-A2GI-06 10 6470206 6470206 G A PRKCQ Missense_Mutation p.S695F 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 10 6553137 6553137 G A PRKCQ Silent p.I46I 0.14 TCGA-EE-A2GI-06 10 68381523 68381523 G A CTNNA3 Missense_Mutation p.S434F 0.22 deleterious(0) possibly_damaging(0.706) TCGA-EE-A2GI-06 10 69881563 69881563 G A MYPN Missense_Mutation p.R123Q 0.19 tolerated(0.56) benign(0.002) TCGA-EE-A2GI-06 10 70248341 70248341 G A SLC25A16 Missense_Mutation p.S219F 0.29 tolerated(0.1) benign(0.014) TCGA-EE-A2GI-06 10 71075758 71075758 C T HK1 Intron 0.15 TCGA-EE-A2GI-06 10 7290601 7290601 T G SFMBT2 Missense_Mutation p.D294A 0.14 tolerated(0.49) probably_damaging(0.997) TCGA-EE-A2GI-06 10 73578797 73578797 G A PSAP Silent p.F474F 0.32 TCGA-EE-A2GI-06 10 74690355 74690355 T A OIT3 Missense_Mutation p.F476Y 0.25 tolerated(0.25) benign(0.174) TCGA-EE-A2GI-06 10 74692132 74692132 G A OIT3 Silent p.R496R 0.28 TCGA-EE-A2GI-06 10 74714432 74714432 G A PLA2G12B Silent p.A4A 0.30 TCGA-EE-A2GI-06 10 75607824 75607824 G A CAMK2G Silent p.I206I 0.21 TCGA-EE-A2GI-06 10 7618458 7618458 C T ITIH5 Missense_Mutation p.E646K 0.26 tolerated(0.39) benign(0.071) TCGA-EE-A2GI-06 10 76719728 76719728 C T KAT6B Missense_Mutation p.P208S 0.24 possibly_damaging(0.852) TCGA-EE-A2GI-06 10 77158574 77158574 G C ZNF503 Missense_Mutation p.P625R 0.21 deleterious(0) possibly_damaging(0.706) TCGA-EE-A2GI-06 10 81319087 81319087 T A SFTPA2 Missense_Mutation p.K51N 0.09 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GI-06 10 82369275 82369275 G A SH2D4B Missense_Mutation p.R318K 0.24 tolerated(0.66) benign(0.014) TCGA-EE-A2GI-06 10 85984123 85984123 C T LRIT2 Nonsense_Mutation p.W286* 0.24 TCGA-EE-A2GI-06 10 87487690 87487690 G A GRID1 Silent p.Y485Y 0.20 TCGA-EE-A2GI-06 10 90770295 90770295 G A FAS Splice_Site p.X148_splice 0.38 TCGA-EE-A2GI-06 10 91065834 91065834 C T IFIT2 Missense_Mutation p.R41W 0.24 deleterious(0) possibly_damaging(0.54) TCGA-EE-A2GI-06 10 92677521 92677521 C T ANKRD1 Missense_Mutation p.E174K 0.26 deleterious(0.02) possibly_damaging(0.769) TCGA-EE-A2GI-06 10 930436 930436 G A LARP4B Missense_Mutation p.P31L 0.26 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A2GI-06 10 95134595 95134595 C T MYOF Silent p.S742S 0.23 TCGA-EE-A2GI-06 10 95262876 95262876 C T CEP55 Nonsense_Mutation p.R64* 0.21 TCGA-EE-A2GI-06 10 96058180 96058180 C T PLCE1 Missense_Mutation p.P1738S 0.26 tolerated(0.32) benign(0.001) TCGA-EE-A2GI-06 10 96466568 96466568 G A CYP2C18 Missense_Mutation p.D224N 0.15 tolerated(0.1) benign(0.076) TCGA-EE-A2GI-06 10 96698526 96698526 C T CYP2C9 Silent p.L29L 0.22 TCGA-EE-A2GI-06 10 96701997 96701997 C T CYP2C9 Missense_Mutation p.S127F 0.36 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A2GI-06 10 96701998 96701998 C T CYP2C9 Silent p.S127S 0.32 TCGA-EE-A2GI-06 10 96802710 96802710 G A CYP2C8 Silent p.V362V 0.08 TCGA-EE-A2GI-06 10 98303926 98303926 G A TM9SF3 Silent p.F364F 0.19 TCGA-EE-A2GI-06 10 98416563 98416563 G A PIK3AP1 Missense_Mutation p.R187C 0.35 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A2GI-06 11 101374855 101374855 C A TRPC6 Missense_Mutation p.S282I 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 11 10585747 10585747 C T LYVE1 Intron 0.33 TCGA-EE-A2GI-06 11 10597865 10597865 A G MRVI1 3'UTR 0.17 TCGA-EE-A2GI-06 11 107920788 107920788 C T CUL5 Nonsense_Mutation p.R136* 0.37 TCGA-EE-A2GI-06 11 108124634 108124634 C T ATM Silent p.T664T 0.27 TCGA-EE-A2GI-06 11 108409798 108409798 C T EXPH5 Silent p.R132R 0.44 TCGA-EE-A2GI-06 11 113803757 113803757 C T HTR3B Missense_Mutation p.S213F 0.43 deleterious(0.04) possibly_damaging(0.819) TCGA-EE-A2GI-06 11 118343024 118343024 C T KMT2A Nonsense_Mutation p.Q384* 0.59 TCGA-EE-A2GI-06 11 118399448 118399448 G A TTC36 Silent p.E83E 0.41 TCGA-EE-A2GI-06 11 12278353 12278353 C T MICAL2 Missense_Mutation p.P993S 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2GI-06 11 123624513 123624513 G A OR6X1 Silent p.T238T 0.17 TCGA-EE-A2GI-06 11 123909373 123909373 G A OR10G7 Silent p.F112F 0.32 TCGA-EE-A2GI-06 11 124120608 124120608 C T OR8G1 Silent p.F62F 0.50 TCGA-EE-A2GI-06 11 124793282 124793282 G A HEPACAM Missense_Mutation p.L253F 0.40 deleterious(0.03) benign(0.079) TCGA-EE-A2GI-06 11 1642974 1642974 G A KRTAP5-4 Missense_Mutation p.S117F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GI-06 11 16812746 16812746 C T PLEKHA7 Missense_Mutation p.E916K 0.48 deleterious(0) benign(0.26) TCGA-EE-A2GI-06 11 18357471 18357471 A G GTF2H1 Missense_Mutation p.K109E 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-EE-A2GI-06 11 18955501 18955501 G A MRGPRX1 Silent p.S277S 0.46 TCGA-EE-A2GI-06 11 20178180 20178180 G A DBX1 Silent p.S243S 0.47 TCGA-EE-A2GI-06 11 20691209 20691209 C T NELL1 5'UTR 0.69 TCGA-EE-A2GI-06 11 20939776 20939776 A G NELL1 Missense_Mutation p.T218A 0.28 tolerated(0.23) benign(0.019) TCGA-EE-A2GI-06 11 22382448 22382448 G A SLC17A6 Silent p.V193V 0.32 TCGA-EE-A2GI-06 11 22399212 22399212 G A SLC17A6 Missense_Mutation p.E559K 0.30 tolerated(0.58) benign(0.003) TCGA-EE-A2GI-06 11 22399224 22399224 G A SLC17A6 Missense_Mutation p.E563K 0.24 tolerated(0.28) benign(0.354) TCGA-EE-A2GI-06 11 26708086 26708086 A G SLC5A12 Silent p.L387L 0.33 TCGA-EE-A2GI-06 11 27016037 27016037 C T FIBIN 5'UTR 0.34 TCGA-EE-A2GI-06 11 2869092 2869092 C T KCNQ1 Silent p.P630P 0.16 TCGA-EE-A2GI-06 11 32720870 32720870 C T CCDC73 Missense_Mutation p.G106E 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 11 34194758 34194758 G A ABTB2 Silent p.I447I 0.49 TCGA-EE-A2GI-06 11 34473725 34473725 C T CAT Missense_Mutation p.P151S 0.33 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A2GI-06 11 35463052 35463052 C T PAMR1 Missense_Mutation p.G354E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 11 35492219 35492219 G A PAMR1 Silent p.L214L 0.35 TCGA-EE-A2GI-06 11 36422618 36422618 G A PRR5L 5'UTR 0.50 TCGA-EE-A2GI-06 11 36511691 36511691 G A TRAF6 Silent p.L422L 0.40 TCGA-EE-A2GI-06 11 4470782 4470782 C T OR52K2 Silent p.I71I 0.32 TCGA-EE-A2GI-06 11 4471496 4471496 C T OR52K2 Silent p.F309F 0.40 TCGA-EE-A2GI-06 11 4510953 4510953 C T OR52K1 Missense_Mutation p.H275Y 0.48 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GI-06 11 45671132 45671132 G A CHST1 3'UTR 0.48 TCGA-EE-A2GI-06 11 46564472 46564472 C T AMBRA1 Silent p.L275L 0.26 TCGA-EE-A2GI-06 11 4661929 4661929 C T OR51D1 Silent p.V303V 0.24 TCGA-EE-A2GI-06 11 46748337 46748337 C T F2 Silent p.I360I 0.19 TCGA-EE-A2GI-06 11 4703715 4703715 G A OR51E2 Missense_Mutation p.T76I 0.46 tolerated(0.13) possibly_damaging(0.907) TCGA-EE-A2GI-06 11 47356646 47356646 C T MYBPC3 Missense_Mutation p.G951E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 11 47497004 47497004 G A CELF1 Missense_Mutation p.A384V 0.19 tolerated(0.06) probably_damaging(0.978) TCGA-EE-A2GI-06 11 48285459 48285459 C T OR4X1 Missense_Mutation p.S16F 0.46 tolerated(0.29) benign(0.179) TCGA-EE-A2GI-06 11 4843091 4843091 G A OR51F2 Missense_Mutation p.G159E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 11 4869916 4869916 G A OR51S1 Missense_Mutation p.P175S 0.21 tolerated(0.14) benign(0.054) TCGA-EE-A2GI-06 11 4936874 4936874 C T OR51G2 Missense_Mutation p.G7E 0.43 tolerated(0.82) unknown(0) TCGA-EE-A2GI-06 11 49598034 49598034 C T RP11-707M1.1 RNA 0.36 TCGA-EE-A2GI-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.22 TCGA-EE-A2GI-06 11 5322336 5322336 G A OR51B4 Missense_Mutation p.P281S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 11 5373580 5373580 C T OR51B6 Silent p.F281F 0.29 TCGA-EE-A2GI-06 11 5410645 5410645 C T OR51M1 Missense_Mutation p.S6L 0.20 tolerated_low_confidence(0.42) benign(0.001) TCGA-EE-A2GI-06 11 5475610 5475610 G A OR51I2 Missense_Mutation p.E298K 0.18 deleterious(0.03) benign(0.242) TCGA-EE-A2GI-06 11 5475616 5475616 C T OR51I2 Missense_Mutation p.R300C 0.47 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2GI-06 11 55136386 55136386 C T OR4A15 Missense_Mutation p.H343Y 0.22 tolerated_low_confidence(0.36) benign(0) TCGA-EE-A2GI-06 11 55321881 55321881 C T OR4C15 Silent p.F33F 0.27 TCGA-EE-A2GI-06 11 55340494 55340494 G A OR4C16 Silent p.R297R 0.44 TCGA-EE-A2GI-06 11 55578985 55578985 C T OR5L1 Missense_Mutation p.L15F 0.16 deleterious(0.01) possibly_damaging(0.617) TCGA-EE-A2GI-06 11 55587908 55587908 C T OR5D18 Missense_Mutation p.S268F 0.14 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GI-06 11 55927452 55927452 G A OR8K5 Silent p.I114I 0.50 TCGA-EE-A2GI-06 11 56020051 56020051 G A OR5T3 Missense_Mutation p.G126R 0.38 deleterious(0) probably_damaging(0.941) TCGA-EE-A2GI-06 11 57574431 57574431 C T CTNND1 Missense_Mutation p.P647S 0.38 deleterious(0.03) possibly_damaging(0.792) TCGA-EE-A2GI-06 11 5757809 5757809 C T OR56B1 Silent p.F21F 0.35 TCGA-EE-A2GI-06 11 5757959 5757959 C T OR56B1 Silent p.F71F 0.15 TCGA-EE-A2GI-06 11 5758199 5758199 A G OR56B1 Silent p.L151L 0.19 TCGA-EE-A2GI-06 11 57970724 57970724 C T OR1S2 Missense_Mutation p.M310I 0.13 tolerated(0.15) benign(0.006) TCGA-EE-A2GI-06 11 5799834 5799834 G A OR52N5 Missense_Mutation p.P11S 0.18 tolerated_low_confidence(0.13) benign(0.018) TCGA-EE-A2GI-06 11 58602012 58602012 G A GLYATL2 Missense_Mutation p.H259Y 0.22 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A2GI-06 11 5862870 5862870 G A OR52E6 Silent p.I86I 0.49 TCGA-EE-A2GI-06 11 58722282 58722282 C T GLYATL1 Missense_Mutation p.R107C 0.18 deleterious(0.05) benign(0.002) TCGA-EE-A2GI-06 11 58723524 58723524 C T GLYATL1 3'UTR 0.17 TCGA-EE-A2GI-06 11 59131940 59131940 G A OR5AN1 Silent p.G3G 0.19 TCGA-EE-A2GI-06 11 59997406 59997406 C T MS4A4E Silent p.K41K 0.50 TCGA-EE-A2GI-06 11 6007616 6007616 C T OR52L1 Missense_Mutation p.G182E 0.35 tolerated(0.1) benign(0.029) TCGA-EE-A2GI-06 11 60971638 60971638 A G PGA3 Missense_Mutation p.K39R 0.18 tolerated(0.08) benign(0.017) TCGA-EE-A2GI-06 11 61290569 61290569 C T SYT7 Missense_Mutation p.S437N 0.17 deleterious(0.02) benign(0.38) TCGA-EE-A2GI-06 11 6129497 6129497 C T OR56B4 Silent p.I163I 0.36 TCGA-EE-A2GI-06 11 61539312 61539312 G A MYRF Missense_Mutation p.D335N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 11 6226797 6226797 G A C11orf42 5'UTR 0.45 TCGA-EE-A2GI-06 11 62763570 62763570 G A SLC22A8 Silent p.A272A 0.49 TCGA-EE-A2GI-06 11 63176338 63176338 G A SLC22A9 Missense_Mutation p.D530N 0.46 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GI-06 11 63517625 63517625 C T RTN3 Missense_Mutation p.S898F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 11 64056796 64056796 C T GPR137 Missense_Mutation p.P463S 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-EE-A2GI-06 11 64421195 64421195 C T NRXN2 Splice_Site p.X797_splice 0.19 TCGA-EE-A2GI-06 11 64522293 64522293 C T PYGM Missense_Mutation p.E291K 0.24 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A2GI-06 11 64621904 64621904 C A EHD1 Silent p.A502A 0.26 TCGA-EE-A2GI-06 11 6470603 6470603 G A TRIM3 Missense_Mutation p.P672L 0.38 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A2GI-06 11 65088671 65088671 C T CDC42EP2 Missense_Mutation p.S101F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 11 65338094 65338094 G T SSSCA1 Missense_Mutation p.W13C 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GI-06 11 65380868 65380868 C T MAP3K11 Silent p.E120E 0.22 TCGA-EE-A2GI-06 11 65417654 65417654 C T SIPA1 Missense_Mutation p.S965F 0.17 deleterious(0.01) benign(0.027) TCGA-EE-A2GI-06 11 65793164 65793164 G A CATSPER1 Silent p.S229S 0.15 TCGA-EE-A2GI-06 11 66192058 66192058 G A NPAS4 Missense_Mutation p.G566E 0.42 tolerated(0.27) probably_damaging(0.96) TCGA-EE-A2GI-06 11 66325598 66325598 C T CTD-3074O7.2 3'Flank 0.14 TCGA-EE-A2GI-06 11 6636489 6636489 G A TPP1 Silent p.G446G 0.22 TCGA-EE-A2GI-06 11 66631276 66631276 G A PC Missense_Mutation p.A446V 0.21 deleterious(0.04) benign(0.367) TCGA-EE-A2GI-06 11 67219040 67219040 G A GPR152 Missense_Mutation p.P386S 0.47 tolerated_low_confidence(0.53) benign(0.001) TCGA-EE-A2GI-06 11 67354088 67354088 C T GSTP1 3'UTR 0.50 TCGA-EE-A2GI-06 11 67399824 67399824 G A TBX10 Missense_Mutation p.P278L 0.23 tolerated(0.06) benign(0.282) TCGA-EE-A2GI-06 11 67811694 67811694 C T TCIRG1 Silent p.A301A 0.44 TCGA-EE-A2GI-06 11 6789461 6789461 G A OR2AG2 Missense_Mutation p.S243F 0.19 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GI-06 11 68181183 68181183 G A LRP5 Missense_Mutation p.D844N 0.37 tolerated(0.35) benign(0.025) TCGA-EE-A2GI-06 11 68747514 68747514 C T MRGPRD Silent p.V314V 0.34 TCGA-EE-A2GI-06 11 68825141 68825141 C T TPCN2 Silent p.S175S 0.19 TCGA-EE-A2GI-06 11 69588793 69588793 G A FGF4 Missense_Mutation p.S148L 0.15 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GI-06 11 7064198 7064198 G A NLRP14 Missense_Mutation p.R314K 0.34 tolerated(1) benign(0.014) TCGA-EE-A2GI-06 11 71808971 71808971 G A LAMTOR1 Intron 0.21 TCGA-EE-A2GI-06 11 72288586 72288586 A G PDE2A Missense_Mutation p.S890P 0.18 tolerated(0.05) benign(0.421) TCGA-EE-A2GI-06 11 72466185 72466185 G A STARD10 Silent p.A211A 0.19 TCGA-EE-A2GI-06 11 73984630 73984630 C T P4HA3 Missense_Mutation p.R453K 0.40 tolerated(0.61) benign(0.004) TCGA-EE-A2GI-06 11 74414480 74414480 G A CHRDL2 Silent p.F272F 0.35 TCGA-EE-A2GI-06 11 75508276 75508276 C T DGAT2 Silent p.I236I 0.43 TCGA-EE-A2GI-06 11 7660993 7660993 C T PPFIBP2 Missense_Mutation p.P423S 0.40 tolerated(0.48) probably_damaging(0.999) TCGA-EE-A2GI-06 11 7818001 7818001 G A OR5P2 Silent p.L163L 0.33 TCGA-EE-A2GI-06 11 7981857 7981857 C T NLRP10 Silent p.R434R 0.41 TCGA-EE-A2GI-06 11 8132174 8132174 C T RIC3 3'UTR 0.27 TCGA-EE-A2GI-06 11 8478967 8478967 C T STK33 Silent p.R206R 0.24 TCGA-EE-A2GI-06 11 86106372 86106372 C T CCDC81 Intron 0.17 TCGA-EE-A2GI-06 11 86152228 86152228 G A ME3 3'UTR 0.59 TCGA-EE-A2GI-06 11 86666029 86666029 C T FZD4 Silent p.P33P 0.31 TCGA-EE-A2GI-06 11 88780813 88780813 C T GRM5 Silent p.L76L 0.40 TCGA-EE-A2GI-06 11 92086290 92086290 C T FAT3 Missense_Mutation p.P338S 0.21 benign(0.063) TCGA-EE-A2GI-06 11 92577195 92577195 G A FAT3 Silent p.L3554L 0.46 TCGA-EE-A2GI-06 11 92616278 92616278 G A FAT3 Missense_Mutation p.R4219H 0.44 benign(0.277) TCGA-EE-A2GI-06 11 94731314 94731314 C T KDM4D Missense_Mutation p.P260S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 101430917 101430917 C T ANO4 Missense_Mutation p.P261S 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 12 101876613 101876613 C T SPIC Missense_Mutation p.S85F 0.41 deleterious(0) possibly_damaging(0.472) TCGA-EE-A2GI-06 12 101880291 101880291 C T SPIC Silent p.T163T 0.12 TCGA-EE-A2GI-06 12 10312467 10312467 G C OLR1 3'UTR 0.46 TCGA-EE-A2GI-06 12 103352346 103352346 T C ASCL1 Silent p.F108F 0.21 TCGA-EE-A2GI-06 12 103699882 103699882 C T C12orf42 Silent p.L167L 0.28 TCGA-EE-A2GI-06 12 103795435 103795435 G A C12orf42 Missense_Mutation p.P33S 0.21 tolerated(0.21) probably_damaging(0.982) TCGA-EE-A2GI-06 12 103872171 103872171 C T C12orf42 Missense_Mutation p.E12K 0.53 tolerated_low_confidence(0.08) possibly_damaging(0.801) TCGA-EE-A2GI-06 12 104179185 104179185 G A NT5DC3 Silent p.I419I 0.42 TCGA-EE-A2GI-06 12 104326062 104326062 G A HSP90B1 Missense_Mutation p.E54K 0.20 deleterious(0) possibly_damaging(0.799) TCGA-EE-A2GI-06 12 106995101 106995101 G A RFX4 Missense_Mutation p.R16K 0.38 tolerated_low_confidence(0.57) benign(0.14) TCGA-EE-A2GI-06 12 10856689 10856689 G A YBX3 Missense_Mutation p.P280L 0.31 deleterious(0.04) benign(0.004) TCGA-EE-A2GI-06 12 109017754 109017754 C T SELPLG Silent p.G126G 0.14 TCGA-EE-A2GI-06 12 109523491 109523491 C T USP30 Missense_Mutation p.R437W 0.45 deleterious(0) possibly_damaging(0.883) TCGA-EE-A2GI-06 12 109692060 109692060 C T ACACB Silent p.P2029P 0.32 TCGA-EE-A2GI-06 12 110390907 110390907 T G GIT2 Missense_Mutation p.N411T 0.14 tolerated(0.08) benign(0) TCGA-EE-A2GI-06 12 110764228 110764228 C T ATP2A2 Missense_Mutation p.P193L 0.24 deleterious(0.02) benign(0.352) TCGA-EE-A2GI-06 12 110824147 110824147 G A ANAPC7 Missense_Mutation p.P302S 0.47 tolerated(0.05) benign(0.437) TCGA-EE-A2GI-06 12 111895157 111895157 G C ATXN2 Missense_Mutation p.T1126R 0.21 possibly_damaging(0.6) TCGA-EE-A2GI-06 12 113314635 113314635 G A RPH3A Missense_Mutation p.E379K 0.37 tolerated(0.09) benign(0.158) TCGA-EE-A2GI-06 12 114832685 114832685 G A TBX5 Missense_Mutation p.S175F 0.44 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GI-06 12 11546329 11546329 C T PRB2 Missense_Mutation p.G228E 0.41 tolerated(0.07) unknown(0) TCGA-EE-A2GI-06 12 117672437 117672437 C T NOS1 Silent p.L1090L 0.15 TCGA-EE-A2GI-06 12 117725962 117725962 C T NOS1 Silent p.R348R 0.29 TCGA-EE-A2GI-06 12 118693445 118693445 G A TAOK3 5'UTR 0.50 TCGA-EE-A2GI-06 12 119909830 119909830 G A CCDC60 Missense_Mutation p.G68R 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2GI-06 12 121000839 121000839 C T RNF10 Missense_Mutation p.P407L 0.39 tolerated(0.14) benign(0.003) TCGA-EE-A2GI-06 12 121205323 121205323 G A SPPL3 Missense_Mutation p.L283F 0.38 deleterious(0) possibly_damaging(0.685) TCGA-EE-A2GI-06 12 121437168 121437168 G A HNF1A Silent p.L533L 0.41 TCGA-EE-A2GI-06 12 122284839 122284839 C T HPD Missense_Mutation p.E254K 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 12 122353785 122353785 C T PSMD9 Silent p.I193I 0.30 TCGA-EE-A2GI-06 12 122437759 122437759 C T WDR66 Silent p.I1048I 0.38 TCGA-EE-A2GI-06 12 122611827 122611827 G A MLXIP Nonsense_Mutation p.W146* 0.41 TCGA-EE-A2GI-06 12 122723159 122723159 T A VPS33A Missense_Mutation p.D426V 0.31 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A2GI-06 12 123201117 123201117 G A HCAR3 Silent p.L56L 0.12 TCGA-EE-A2GI-06 12 124091996 124091996 C T DDX55 Silent p.I88I 0.45 TCGA-EE-A2GI-06 12 124497191 124497191 G A ZNF664 Missense_Mutation p.G167E 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GI-06 12 124824853 124824853 G A NCOR2 Silent p.P1825P 0.36 TCGA-EE-A2GI-06 12 129558594 129558594 C T TMEM132D Silent p.R1042R 0.16 TCGA-EE-A2GI-06 12 130827153 130827153 G A PIWIL1 Missense_Mutation p.R6Q 0.59 tolerated(0.05) unknown(0) TCGA-EE-A2GI-06 12 130919319 130919319 G A RIMBP2 Missense_Mutation p.S721L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 12 13715781 13715781 G A GRIN2B Missense_Mutation p.A1464V 0.41 tolerated(0.67) benign(0.012) TCGA-EE-A2GI-06 12 14706247 14706247 T G PLBD1 Missense_Mutation p.N72T 0.38 deleterious(0) possibly_damaging(0.505) TCGA-EE-A2GI-06 12 18865877 18865877 C T PLCZ1 Missense_Mutation p.D205N 0.16 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GI-06 12 20807040 20807040 G T PDE3A Missense_Mutation p.D1029Y 0.38 deleterious(0.01) possibly_damaging(0.702) TCGA-EE-A2GI-06 12 20868116 20868116 C T SLCO1C1 Silent p.F191F 0.39 TCGA-EE-A2GI-06 12 20874906 20874906 C T SLCO1C1 Missense_Mutation p.S315F 0.39 deleterious(0.04) benign(0.053) TCGA-EE-A2GI-06 12 21054322 21054322 G A SLCO1B3 Missense_Mutation p.D596N 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 21971127 21971127 G A ABCC9 Missense_Mutation p.S1243L 0.13 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 12 2224708 2224708 G A CACNA1C Nonsense_Mutation p.W123* 0.18 TCGA-EE-A2GI-06 12 2719789 2719789 A G CACNA1C Missense_Mutation p.Y1234C 0.28 deleterious(0) possibly_damaging(0.714) TCGA-EE-A2GI-06 12 278263 278263 C T IQSEC3 Missense_Mutation p.S1019L 0.26 deleterious(0.03) possibly_damaging(0.885) TCGA-EE-A2GI-06 12 30884430 30884430 C T CAPRIN2 Missense_Mutation p.D303N 0.09 deleterious(0) possibly_damaging(0.627) TCGA-EE-A2GI-06 12 31242042 31242042 C A DDX11 Missense_Mutation p.P250H 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 31944860 31944860 C T H3F3C Missense_Mutation p.D81N 0.26 deleterious_low_confidence(0.01) benign(0.093) TCGA-EE-A2GI-06 12 32996185 32996185 G A PKP2 Missense_Mutation p.P481S 0.20 tolerated_low_confidence(0.89) benign(0.001) TCGA-EE-A2GI-06 12 33031073 33031073 C T PKP2 Silent p.G247G 0.28 TCGA-EE-A2GI-06 12 33532801 33532801 C T SYT10 Missense_Mutation p.R489Q 0.27 deleterious(0.01) benign(0.006) TCGA-EE-A2GI-06 12 33592343 33592343 G A SYT10 Missense_Mutation p.P39S 0.30 tolerated(0.4) benign(0.001) TCGA-EE-A2GI-06 12 3931093 3931093 C T PARP11 Missense_Mutation p.R165Q 0.44 tolerated(0.6) benign(0.029) TCGA-EE-A2GI-06 12 44148979 44148979 G A PUS7L Missense_Mutation p.H24Y 0.42 tolerated(1) benign(0.035) TCGA-EE-A2GI-06 12 44148981 44148981 A T PUS7L Missense_Mutation p.F23Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 12 44189379 44189379 G A TWF1 3'UTR 0.41 TCGA-EE-A2GI-06 12 4479429 4479429 C T FGF23 3'UTR 0.51 TCGA-EE-A2GI-06 12 45567771 45567771 G A PLEKHA8P1 RNA 0.13 TCGA-EE-A2GI-06 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GI-06 12 46633496 46633496 C T SLC38A1 Missense_Mutation p.D30N 0.20 tolerated(0.24) benign(0.057) TCGA-EE-A2GI-06 12 47170749 47170749 G A SLC38A4 Missense_Mutation p.S371F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 48372520 48372520 G A COL2A1 Missense_Mutation p.P919S 0.21 unknown(0) TCGA-EE-A2GI-06 12 48477454 48477454 G A SENP1 Missense_Mutation p.P158S 0.46 deleterious(0.03) benign(0.211) TCGA-EE-A2GI-06 12 48919535 48919535 G A OR8S1 Missense_Mutation p.E41K 0.38 deleterious(0) benign(0.017) TCGA-EE-A2GI-06 12 49228130 49228130 C T DDX23 Silent p.Q511Q 0.37 TCGA-EE-A2GI-06 12 49434611 49434611 G A KMT2D Silent p.T2314T 0.24 TCGA-EE-A2GI-06 12 49521749 49521749 C T TUBA1B Missense_Mutation p.E450K 0.50 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A2GI-06 12 50264310 50264310 G A FAIM2 Missense_Mutation p.L310F 0.46 tolerated(0.16) benign(0.026) TCGA-EE-A2GI-06 12 51493552 51493552 G A TFCP2 Missense_Mutation p.P388S 0.36 deleterious(0.01) possibly_damaging(0.842) TCGA-EE-A2GI-06 12 52309221 52309221 C T ACVRL1 Missense_Mutation p.R329C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 52566898 52566898 C T KRT80 Missense_Mutation p.S294N 0.35 tolerated(1) benign(0.006) TCGA-EE-A2GI-06 12 52825840 52825840 C T KRT75 Missense_Mutation p.E242K 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 52966262 52966262 C T KRT74 Missense_Mutation p.D221N 0.12 deleterious(0.02) benign(0.108) TCGA-EE-A2GI-06 12 52992684 52992684 C T KRT72 Silent p.K213K 0.24 TCGA-EE-A2GI-06 12 53207450 53207450 C T KRT4 Silent p.Q131Q 0.43 TCGA-EE-A2GI-06 12 53242363 53242363 G A KRT78 Missense_Mutation p.L118F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 53344144 53344144 C T KRT18 Silent p.I150I 0.41 TCGA-EE-A2GI-06 12 53819593 53819593 G A AMHR2 Missense_Mutation p.E248K 0.19 tolerated(0.24) possibly_damaging(0.635) TCGA-EE-A2GI-06 12 54379302 54379302 C T HOXC10 Missense_Mutation p.R87C 0.23 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GI-06 12 54891547 54891547 T A NCKAP1L 5'UTR 0.15 TCGA-EE-A2GI-06 12 54891548 54891548 C G NCKAP1L 5'UTR 0.18 TCGA-EE-A2GI-06 12 54932736 54932736 C T NCKAP1L Silent p.S1084S 0.18 TCGA-EE-A2GI-06 12 55863785 55863785 G A OR6C70 Silent p.L46L 0.31 TCGA-EE-A2GI-06 12 55886345 55886345 C T OR6C68 Nonsense_Mutation p.Q62* 0.16 TCGA-EE-A2GI-06 12 55945033 55945033 G A OR6C4 Missense_Mutation p.G8D 0.38 deleterious_low_confidence(0) benign(0) TCGA-EE-A2GI-06 12 56087064 56087064 G A ITGA7 Missense_Mutation p.S862F 0.23 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GI-06 12 56492231 56492231 C T ERBB3 Intron 0.40 TCGA-EE-A2GI-06 12 56679769 56679769 C T CS Silent p.E44E 0.19 TCGA-EE-A2GI-06 12 56965567 56965567 C T RBMS2 Missense_Mutation p.P157L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 57569831 57569831 C T LRP1 Silent p.L1311L 0.21 TCGA-EE-A2GI-06 12 57894287 57894287 C T MARS Silent p.I425I 0.20 TCGA-EE-A2GI-06 12 60168834 60168834 G A SLC16A7 Missense_Mutation p.G253E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 12 6127662 6127662 C T VWF Missense_Mutation p.R1641K 0.53 tolerated(0.92) benign(0.001) TCGA-EE-A2GI-06 12 62965244 62965244 C T MON2 Missense_Mutation p.L1466F 0.17 tolerated(0.14) possibly_damaging(0.686) TCGA-EE-A2GI-06 12 66152542 66152542 C T RPSAP52 RNA 0.31 TCGA-EE-A2GI-06 12 6637358 6637358 C A NCAPD2 Missense_Mutation p.Q1055K 0.26 deleterious(0.01) benign(0.045) TCGA-EE-A2GI-06 12 66531946 66531946 A G TMBIM4 Missense_Mutation p.F171L 0.15 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 12 6692249 6692249 G A CHD4 Missense_Mutation p.S1364F 0.21 deleterious(0) possibly_damaging(0.831) TCGA-EE-A2GI-06 12 6700880 6700880 G A CHD4 Missense_Mutation p.R1068C 0.29 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2GI-06 12 6884007 6884007 T G LAG3 Missense_Mutation p.I253S 0.45 tolerated(0.1) benign(0.042) TCGA-EE-A2GI-06 12 69764559 69764559 C T YEATS4 Missense_Mutation p.S136L 0.40 deleterious(0.01) possibly_damaging(0.743) TCGA-EE-A2GI-06 12 69965066 69965066 C T FRS2 Silent p.A88A 0.24 TCGA-EE-A2GI-06 12 70070981 70070981 C T BEST3 Silent p.G231G 0.40 TCGA-EE-A2GI-06 12 71898457 71898457 G A LGR5 Silent p.L92L 0.35 TCGA-EE-A2GI-06 12 7362674 7362674 C T PEX5 Missense_Mutation p.P607L 0.35 deleterious(0.01) benign(0.227) TCGA-EE-A2GI-06 12 7531782 7531782 C T CD163L1 Missense_Mutation p.M721I 0.15 tolerated(0.09) benign(0.002) TCGA-EE-A2GI-06 12 7653894 7653894 C T CD163 Missense_Mutation p.A100T 0.12 tolerated(0.39) possibly_damaging(0.904) TCGA-EE-A2GI-06 12 77449688 77449688 C A E2F7 Nonsense_Mutation p.G106* 0.44 TCGA-EE-A2GI-06 12 7805421 7805421 C T APOBEC1 Missense_Mutation p.E19K 0.41 tolerated(0.22) benign(0.069) TCGA-EE-A2GI-06 12 7848100 7848100 C T GDF3 Silent p.E75E 0.43 TCGA-EE-A2GI-06 12 7882210 7882210 C T CLEC4C Missense_Mutation p.M208I 0.41 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A2GI-06 12 7973829 7973829 G A SLC2A14 Silent p.F342F 0.34 TCGA-EE-A2GI-06 12 81101868 81101868 C T MYF6 Missense_Mutation p.P124S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 12 81627128 81627128 G A ACSS3 Missense_Mutation p.G533R 0.30 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GI-06 12 8327868 8327868 G A ZNF705A Missense_Mutation p.G62R 0.20 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A2GI-06 12 8376609 8376609 C T FAM90A1 Intron 0.14 TCGA-EE-A2GI-06 12 8608627 8608627 G A CLEC6A 5'UTR 0.43 TCGA-EE-A2GI-06 12 88383123 88383123 C T C12orf50 Silent p.R206R 0.30 TCGA-EE-A2GI-06 12 91347709 91347709 G A CCER1 Missense_Mutation p.L271F 0.22 tolerated(0.15) benign(0.354) TCGA-EE-A2GI-06 12 9305726 9305726 G A PZP Missense_Mutation p.L1330F 0.51 deleterious(0.01) possibly_damaging(0.563) TCGA-EE-A2GI-06 12 95488460 95488460 C A FGD6 Nonsense_Mutation p.E1170* 0.42 TCGA-EE-A2GI-06 12 96354389 96354389 G A AMDHD1 Missense_Mutation p.M267I 0.22 tolerated(0.38) benign(0.01) TCGA-EE-A2GI-06 12 97052043 97052043 T C C12orf55 Silent p.L1793L 0.45 TCGA-EE-A2GI-06 12 97078890 97078890 C T C12orf55 Missense_Mutation p.P1963L 0.10 tolerated(0.49) benign(0.096) TCGA-EE-A2GI-06 13 102359248 102359248 G A ITGBL1 Silent p.G425G 0.08 TCGA-EE-A2GI-06 13 111896267 111896267 C T ARHGEF7 Nonsense_Mutation p.Q291* 0.39 TCGA-EE-A2GI-06 13 114503840 114503840 T G TMEM255B Missense_Mutation p.V155G 0.55 deleterious(0.01) benign(0.315) TCGA-EE-A2GI-06 13 20006665 20006665 G A TPTE2 Silent p.L390L 0.11 TCGA-EE-A2GI-06 13 25026555 25026555 G A PARP4 Silent p.A1001A 0.40 TCGA-EE-A2GI-06 13 25353861 25353861 C T RNF17 Silent p.F162F 0.35 TCGA-EE-A2GI-06 13 25373580 25373580 G A RNF17 Missense_Mutation p.G483R 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 13 28602361 28602361 T A FLT3 Silent p.G669G 0.35 TCGA-EE-A2GI-06 13 29600048 29600048 G A MTUS2 Missense_Mutation p.G415R 0.74 tolerated(0.05) benign(0.051) TCGA-EE-A2GI-06 13 29600623 29600623 G A MTUS2 Silent p.G606G 0.26 TCGA-EE-A2GI-06 13 30805518 30805518 G A KATNAL1 Missense_Mutation p.S273L 0.13 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GI-06 13 32366846 32366846 C T RXFP2 Silent p.F469F 0.13 TCGA-EE-A2GI-06 13 33332294 33332294 G A PDS5B Silent p.K1042K 0.09 TCGA-EE-A2GI-06 13 36765966 36765966 G A SOHLH2 Missense_Mutation p.H243Y 0.49 tolerated(0.16) benign(0.435) TCGA-EE-A2GI-06 13 39264404 39264404 G A FREM2 Missense_Mutation p.E975K 0.11 deleterious(0.01) benign(0.017) TCGA-EE-A2GI-06 13 41933026 41933026 C T NAA16 Silent p.S446S 0.46 TCGA-EE-A2GI-06 13 43180898 43180898 G A TNFSF11 Silent p.G266G 0.10 TCGA-EE-A2GI-06 13 45148310 45148310 G T TSC22D1 Missense_Mutation p.P634Q 0.09 tolerated(0.32) benign(0.008) TCGA-EE-A2GI-06 13 46942885 46942885 G A KIAA0226L Missense_Mutation p.P201S 0.14 deleterious(0.04) probably_damaging(0.978) TCGA-EE-A2GI-06 13 49085947 49085947 G A RCBTB2 Missense_Mutation p.P248S 0.41 deleterious(0.01) possibly_damaging(0.528) TCGA-EE-A2GI-06 13 67800118 67800118 T C PCDH9 Missense_Mutation p.I819V 0.45 tolerated(0.81) benign(0.122) TCGA-EE-A2GI-06 13 72147000 72147000 G A DACH1 Missense_Mutation p.P426L 0.35 benign(0.018) TCGA-EE-A2GI-06 13 79908520 79908520 G A RBM26 Missense_Mutation p.H900Y 0.14 deleterious(0.01) possibly_damaging(0.705) TCGA-EE-A2GI-06 13 97485076 97485076 A G HS6ST3 Missense_Mutation p.N347S 0.09 tolerated(0.26) benign(0.336) TCGA-EE-A2GI-06 14 101004369 101004369 G A BEGAIN Silent p.G573G 0.46 TCGA-EE-A2GI-06 14 101434481 101434481 C T SNORD114-11 RNA 0.42 TCGA-EE-A2GI-06 14 102963977 102963977 C T TECPR2 Silent p.A1334A 0.27 TCGA-EE-A2GI-06 14 104378882 104378882 A G C14orf2 3'UTR 0.33 TCGA-EE-A2GI-06 14 104491924 104491924 G A TDRD9 Nonsense_Mutation p.W914* 0.16 TCGA-EE-A2GI-06 14 104491926 104491926 G A TDRD9 Missense_Mutation p.G915E 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 14 105174795 105174795 C T INF2 Silent p.S586S 0.35 TCGA-EE-A2GI-06 14 106111115 106111115 C T IGHG2 Missense_Mutation p.G5S 0.10 tolerated(0.1) benign(0.291) TCGA-EE-A2GI-06 14 106405836 106405836 C T IGHV6-1 Silent p.G46G 0.38 TCGA-EE-A2GI-06 14 106692133 106692133 C T IGHV3-21 5'UTR 0.27 TCGA-EE-A2GI-06 14 106733245 106733245 G A IGHV1-24 Nonsense_Mutation p.Q84* 0.19 TCGA-EE-A2GI-06 14 106830011 106830011 C T IGHV4-34 Nonsense_Mutation p.W12* 0.16 TCGA-EE-A2GI-06 14 107095318 107095318 G A IGHV4-61 Silent p.Y54Y 0.45 TCGA-EE-A2GI-06 14 20215950 20215950 G A OR4Q3 Missense_Mutation p.D122N 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 14 20295822 20295822 C T OR4N2 Missense_Mutation p.S72F 0.16 deleterious(0.02) possibly_damaging(0.769) TCGA-EE-A2GI-06 14 20344713 20344713 G A OR4K2 Missense_Mutation p.G96D 0.35 deleterious(0.01) benign(0.162) TCGA-EE-A2GI-06 14 20345254 20345254 C T OR4K2 Silent p.T276T 0.38 TCGA-EE-A2GI-06 14 20444677 20444677 C T OR4K15 Nonsense_Mutation p.Q334* 0.45 TCGA-EE-A2GI-06 14 20585705 20585705 G A OR4K17 Missense_Mutation p.G47E 0.16 deleterious(0.02) possibly_damaging(0.799) TCGA-EE-A2GI-06 14 20585706 20585706 A T OR4K17 Silent p.G47G 0.16 TCGA-EE-A2GI-06 14 20711058 20711058 C T OR11H4 Silent p.F36F 0.12 TCGA-EE-A2GI-06 14 21549984 21549984 C T ARHGEF40 Missense_Mutation p.S986L 0.50 tolerated(0.23) benign(0.436) TCGA-EE-A2GI-06 14 22111199 22111199 G A TRAV1-2 Missense_Mutation p.G3R 0.17 deleterious(0.01) benign(0.257) TCGA-EE-A2GI-06 14 22471635 22471635 G A TRAV18 Missense_Mutation p.G20R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 14 23587028 23587028 G A CEBPE Missense_Mutation p.P172S 0.35 tolerated(0.69) probably_damaging(0.992) TCGA-EE-A2GI-06 14 24649108 24649108 C A REC8 Silent p.L517L 0.40 TCGA-EE-A2GI-06 14 24877315 24877315 C T NYNRIN Missense_Mutation p.P147S 0.24 tolerated_low_confidence(0.13) benign(0.027) TCGA-EE-A2GI-06 14 24877316 24877316 C T NYNRIN Missense_Mutation p.P147L 0.24 deleterious_low_confidence(0.03) benign(0.424) TCGA-EE-A2GI-06 14 29237749 29237749 C T FOXG1 Missense_Mutation p.P422S 0.32 deleterious(0.01) benign(0.264) TCGA-EE-A2GI-06 14 31381349 31381349 G A STRN3 Missense_Mutation p.P472S 0.50 deleterious(0.01) benign(0.419) TCGA-EE-A2GI-06 14 35778136 35778136 C T PSMA6 Missense_Mutation p.S63F 0.39 deleterious(0) possibly_damaging(0.452) TCGA-EE-A2GI-06 14 39716536 39716536 G A MIA2 Missense_Mutation p.S253N 0.13 tolerated(0.07) benign(0.178) TCGA-EE-A2GI-06 14 39716537 39716537 T G MIA2 Missense_Mutation p.S253R 0.15 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2GI-06 14 45537756 45537756 C T FAM179B Missense_Mutation p.P1574S 0.19 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A2GI-06 14 55818526 55818526 C T FBXO34 Missense_Mutation p.S473F 0.43 tolerated(0.74) possibly_damaging(0.526) TCGA-EE-A2GI-06 14 57960304 57960304 A G C14orf105 Missense_Mutation p.S44P 0.15 tolerated(0.34) benign(0.045) TCGA-EE-A2GI-06 14 63175101 63175101 G A KCNH5 Missense_Mutation p.L698F 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 14 63511952 63511952 G A KCNH5 5'UTR 0.23 TCGA-EE-A2GI-06 14 63784480 63784480 C T GPHB5 RNA 0.24 TCGA-EE-A2GI-06 14 63888727 63888727 G A PPP2R5E Missense_Mutation p.S147L 0.15 deleterious(0) probably_damaging(0.918) TCGA-EE-A2GI-06 14 64628973 64628973 C T SYNE2 Silent p.P5426P 0.46 TCGA-EE-A2GI-06 14 68029204 68029204 C T PLEKHH1 Silent p.L286L 0.39 TCGA-EE-A2GI-06 14 68044784 68044784 G A PLEKHH1 Silent p.V873V 0.16 TCGA-EE-A2GI-06 14 69814766 69814766 C T GALNT16 Intron 0.58 TCGA-EE-A2GI-06 14 70924751 70924751 G A ADAM21 Missense_Mutation p.E179K 0.26 tolerated(0.25) benign(0.033) TCGA-EE-A2GI-06 14 70925538 70925538 G A ADAM21 Missense_Mutation p.R441K 0.25 tolerated(0.99) benign(0.015) TCGA-EE-A2GI-06 14 72190579 72190579 C T SIPA1L1 Missense_Mutation p.S1496F 0.20 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A2GI-06 14 73190413 73190413 A G DPF3 Silent p.N151N 0.37 TCGA-EE-A2GI-06 14 74042203 74042203 C T ACOT2 Missense_Mutation p.P480S 0.19 tolerated(0.5) benign(0.009) TCGA-EE-A2GI-06 14 74179169 74179169 A - PNMA1 3'UTR 0.12 TCGA-EE-A2GI-06 14 74206606 74206606 G A ELMSAN1 Nonsense_Mutation p.Q36* 0.53 TCGA-EE-A2GI-06 14 74824770 74824770 C T VRTN Silent p.F428F 0.45 TCGA-EE-A2GI-06 14 75248527 75248527 C T YLPM1 Missense_Mutation p.P594L 0.39 unknown(0) TCGA-EE-A2GI-06 14 75469738 75469738 C T EIF2B2 Silent p.I15I 0.17 TCGA-EE-A2GI-06 14 75485552 75485552 G A MLH3 Missense_Mutation p.H1408Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 14 80668782 80668782 C T DIO2 3'Flank 0.45 TCGA-EE-A2GI-06 14 88729891 88729891 G A KCNK10 Silent p.A19A 0.42 TCGA-EE-A2GI-06 14 89061316 89061316 A T ZC3H14 Intron 0.21 TCGA-EE-A2GI-06 14 90651153 90651153 G A KCNK13 Missense_Mutation p.E345K 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GI-06 14 92055994 92055994 G A CATSPERB Missense_Mutation p.P947L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 14 92336628 92336628 G A FBLN5 Silent p.I429I 0.42 TCGA-EE-A2GI-06 14 92466440 92466440 C T TRIP11 Missense_Mutation p.E1524K 0.13 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 14 93125560 93125560 C T RIN3 Missense_Mutation p.A694V 0.26 deleterious(0.03) possibly_damaging(0.885) TCGA-EE-A2GI-06 14 93708971 93708971 T C BTBD7 Missense_Mutation p.H1016R 0.24 deleterious_low_confidence(0.03) benign(0.01) TCGA-EE-A2GI-06 14 93813585 93813585 C T COX8C 5'UTR 0.15 TCGA-EE-A2GI-06 14 94046668 94046668 G A UNC79 Silent p.Q692Q 0.27 TCGA-EE-A2GI-06 14 94712813 94712813 C T PPP4R4 Silent p.V516V 0.52 TCGA-EE-A2GI-06 14 94756535 94756535 G A SERPINA10 Silent p.A132A 0.44 TCGA-EE-A2GI-06 14 94914675 94914675 C T SERPINA11 Missense_Mutation p.R146Q 0.21 tolerated(1) benign(0.002) TCGA-EE-A2GI-06 14 95054004 95054004 G A SERPINA5 Missense_Mutation p.S102N 0.15 tolerated(0.5) benign(0.004) TCGA-EE-A2GI-06 14 95056491 95056491 C G SERPINA5 Missense_Mutation p.L245V 0.19 tolerated(0.17) benign(0.015) TCGA-EE-A2GI-06 14 95556998 95556998 G A DICER1 Missense_Mutation p.P1869L 0.46 tolerated(0.13) probably_damaging(0.938) TCGA-EE-A2GI-06 14 95556999 95556999 G A DICER1 Missense_Mutation p.P1869S 0.45 tolerated(0.09) possibly_damaging(0.802) TCGA-EE-A2GI-06 14 96731048 96731048 G A BDKRB1 Silent p.R343R 0.44 TCGA-EE-A2GI-06 14 99871664 99871664 G A SETD3 Silent p.I323I 0.43 TCGA-EE-A2GI-06 15 22382955 22382955 C T OR4N4 Silent p.V161V 0.31 TCGA-EE-A2GI-06 15 23812438 23812438 C T MKRN3 Silent p.F503F 0.37 TCGA-EE-A2GI-06 15 23931540 23931540 G A NDN Silent p.I275I 0.27 TCGA-EE-A2GI-06 15 25326359 25326359 G A SNORD116-12 3'Flank 0.24 TCGA-EE-A2GI-06 15 25336868 25336868 T C SNORD116-23 5'Flank 0.31 TCGA-EE-A2GI-06 15 25351673 25351673 G A SNORD116-29 RNA 0.30 TCGA-EE-A2GI-06 15 25422007 25422007 C T SNORD115-4 RNA 0.33 TCGA-EE-A2GI-06 15 25442776 25442776 C T SNORD115-15 RNA 0.37 TCGA-EE-A2GI-06 15 25468303 25468303 C T SNORD115-27 3'Flank 0.43 TCGA-EE-A2GI-06 15 27572135 27572135 C T GABRG3 Silent p.L150L 0.33 TCGA-EE-A2GI-06 15 28370267 28370267 G A HERC2 Missense_Mutation p.P4292L 0.31 probably_damaging(1) TCGA-EE-A2GI-06 15 31202912 31202912 G A FAN1 Missense_Mutation p.G491R 0.18 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GI-06 15 31294290 31294290 G A TRPM1 Missense_Mutation p.P1555L 0.25 tolerated_low_confidence(0.11) benign(0.068) TCGA-EE-A2GI-06 15 34654491 34654491 A G LPCAT4 Missense_Mutation p.F306L 0.41 tolerated(0.31) benign(0.005) TCGA-EE-A2GI-06 15 39910330 39910330 C T FSIP1 Silent p.E435E 0.40 TCGA-EE-A2GI-06 15 40591081 40591081 G A PLCB2 Silent p.S256S 0.46 TCGA-EE-A2GI-06 15 40942525 40942525 A T CASC5 Nonsense_Mutation p.K2067* 0.25 TCGA-EE-A2GI-06 15 41854852 41854852 C T TYRO3 Silent p.V172V 0.42 TCGA-EE-A2GI-06 15 42156208 42156208 A C SPTBN5 Missense_Mutation p.D2311E 0.25 possibly_damaging(0.838) TCGA-EE-A2GI-06 15 42363337 42363337 G A PLA2G4D Silent p.D620D 0.20 TCGA-EE-A2GI-06 15 43347094 43347094 G A UBR1 Nonsense_Mutation p.R429* 0.35 TCGA-EE-A2GI-06 15 43713272 43713272 G A TP53BP1 Missense_Mutation p.R1401C 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GI-06 15 44092743 44092743 C T HYPK 5'UTR 0.50 TCGA-EE-A2GI-06 15 45723006 45723006 C T C15orf48 Silent p.F4F 0.21 TCGA-EE-A2GI-06 15 45968309 45968309 G A SQRDL Missense_Mutation p.R222Q 0.34 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GI-06 15 49293287 49293287 T A SECISBP2L Missense_Mutation p.N679Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 15 52005530 52005530 G A SCG3 Missense_Mutation p.G403E 0.29 deleterious_low_confidence(0.02) benign(0.251) TCGA-EE-A2GI-06 15 52539151 52539151 G A MYO5C Nonsense_Mutation p.R648* 0.31 TCGA-EE-A2GI-06 15 54860035 54860035 A G UNC13C Missense_Mutation p.N1999S 0.36 tolerated_low_confidence(0.24) benign(0.026) TCGA-EE-A2GI-06 15 55931908 55931908 G A PRTG Silent p.I752I 0.31 TCGA-EE-A2GI-06 15 57925814 57925814 G A GCOM1 Missense_Mutation p.E270K 0.20 tolerated(0.52) possibly_damaging(0.557) TCGA-EE-A2GI-06 15 65157377 65157377 G A PLEKHO2 Missense_Mutation p.D255N 0.30 tolerated(0.55) benign(0.038) TCGA-EE-A2GI-06 15 67878236 67878236 C T MAP2K5 Missense_Mutation p.P111S 0.14 tolerated(0.38) benign(0.038) TCGA-EE-A2GI-06 15 69548140 69548140 C T GLCE 5'UTR 0.35 TCGA-EE-A2GI-06 15 69561544 69561544 G A GLCE Nonsense_Mutation p.W605* 0.34 TCGA-EE-A2GI-06 15 71196915 71196915 C T LRRC49 Silent p.I112I 0.33 TCGA-EE-A2GI-06 15 73562426 73562426 C T NEO1 Missense_Mutation p.P857L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 15 74173986 74173986 G A TBC1D21 Missense_Mutation p.G57D 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 15 75042694 75042694 C T CYP1A2 Silent p.F205F 0.37 TCGA-EE-A2GI-06 15 75094954 75094954 C T CSK 3'UTR 0.50 TCGA-EE-A2GI-06 15 75664325 75664325 G T SIN3A Missense_Mutation p.P1273T 0.36 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-EE-A2GI-06 15 77324710 77324710 C T PSTPIP1 Silent p.A271A 0.16 TCGA-EE-A2GI-06 15 77756592 77756592 C T HMG20A Missense_Mutation p.P34S 0.09 tolerated_low_confidence(0.66) benign(0) TCGA-EE-A2GI-06 15 78923654 78923654 C T CHRNB4 Missense_Mutation p.M75I 0.34 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A2GI-06 15 83456038 83456038 G A FSD2 Silent p.L35L 0.40 TCGA-EE-A2GI-06 15 83820057 83820057 T C HDGFRP3 Silent p.K172K 0.29 TCGA-EE-A2GI-06 15 85326475 85326475 C T ZNF592 Missense_Mutation p.P190L 0.37 deleterious(0) possibly_damaging(0.56) TCGA-EE-A2GI-06 15 85476404 85476404 C T SLC28A1 Missense_Mutation p.S371F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 15 86807805 86807805 G A AGBL1 Nonsense_Mutation p.W422* 0.23 TCGA-EE-A2GI-06 15 88522458 88522458 C T NTRK3 Intron 0.38 TCGA-EE-A2GI-06 15 89382240 89382240 C T ACAN Silent p.I139I 0.26 TCGA-EE-A2GI-06 15 89399942 89399942 C T ACAN Missense_Mutation p.P1376S 0.13 tolerated(0.21) possibly_damaging(0.562) TCGA-EE-A2GI-06 15 89849247 89849247 C T FANCI Missense_Mutation p.S1120F 0.39 deleterious(0.01) benign(0.35) TCGA-EE-A2GI-06 15 92981677 92981677 C T ST8SIA2 Nonsense_Mutation p.R129* 0.36 TCGA-EE-A2GI-06 16 1272781 1272781 G T TPSG1 Missense_Mutation p.L128M 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GI-06 16 12758853 12758853 G A CPPED1 Nonsense_Mutation p.R279* 0.44 TCGA-EE-A2GI-06 16 1500599 1500599 C T CLCN7 Missense_Mutation p.G506R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 16 1535943 1535943 G A PTX4 Silent p.P473P 0.22 TCGA-EE-A2GI-06 16 15818255 15818255 C T MYH11 Silent p.S1383S 0.26 TCGA-EE-A2GI-06 16 16282697 16282697 G A ABCC6 Silent p.S590S 0.36 TCGA-EE-A2GI-06 16 16360958 16360958 G A NOMO3 Missense_Mutation p.G622R 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 16 1779566 1779566 C T MAPK8IP3 Silent p.L197L 0.32 TCGA-EE-A2GI-06 16 1798340 1798340 G A MAPK8IP3 Missense_Mutation p.G363R 0.32 tolerated(0.09) benign(0.032) TCGA-EE-A2GI-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.34 deleterious(0.03) benign(0.001) TCGA-EE-A2GI-06 16 20563612 20563612 C T ACSM2B Missense_Mutation p.G250S 0.25 tolerated(0.12) benign(0.069) TCGA-EE-A2GI-06 16 21061243 21061243 G A DNAH3 Silent p.A1445A 0.28 TCGA-EE-A2GI-06 16 21136549 21136549 C T DNAH3 Missense_Mutation p.E451K 0.46 tolerated(0.5) benign(0.004) TCGA-EE-A2GI-06 16 21245187 21245187 G A ANKS4B Silent p.G43G 0.37 TCGA-EE-A2GI-06 16 21666636 21666636 C T METTL9 Silent p.F280F 0.29 TCGA-EE-A2GI-06 16 21693134 21693134 C T OTOA Silent p.I85I 0.39 TCGA-EE-A2GI-06 16 21721277 21721277 G A OTOA Silent p.S391S 0.41 TCGA-EE-A2GI-06 16 21771881 21771881 C T OTOA 3'UTR 0.40 TCGA-EE-A2GI-06 16 23080546 23080546 G A USP31 Silent p.S960S 0.27 TCGA-EE-A2GI-06 16 23224185 23224185 C T SCNN1G Silent p.S467S 0.42 TCGA-EE-A2GI-06 16 24373007 24373007 C T CACNG3 Silent p.I257I 0.29 TCGA-EE-A2GI-06 16 25258337 25258337 G A ZKSCAN2 Nonsense_Mutation p.R394* 0.41 TCGA-EE-A2GI-06 16 27445682 27445682 G A IL21R Missense_Mutation p.D22N 0.34 tolerated(0.61) benign(0.036) TCGA-EE-A2GI-06 16 27476020 27476020 G A GTF3C1 Silent p.D1831D 0.36 TCGA-EE-A2GI-06 16 28898962 28898962 G A ATP2A1 Missense_Mutation p.V283I 0.10 tolerated(0.16) benign(0.002) TCGA-EE-A2GI-06 16 30733927 30733927 C T SRCAP Silent p.L1250L 0.39 TCGA-EE-A2GI-06 16 31073569 31073569 G A ZNF668 Missense_Mutation p.S250F 0.35 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GI-06 16 31234238 31234238 G A TRIM72 Nonsense_Mutation p.W277* 0.34 TCGA-EE-A2GI-06 16 31374393 31374393 G A ITGAX Silent p.R499R 0.44 TCGA-EE-A2GI-06 16 31508266 31508266 G A C16orf58 Silent p.I202I 0.35 TCGA-EE-A2GI-06 16 3163390 3163390 G A ZNF205 5'UTR 0.26 TCGA-EE-A2GI-06 16 3778043 3778043 G A CREBBP Silent p.I2335I 0.30 TCGA-EE-A2GI-06 16 4242630 4242630 C T SRL Missense_Mutation p.E316K 0.31 tolerated(0.23) benign(0.341) TCGA-EE-A2GI-06 16 46771906 46771906 G A MYLK3 Silent p.L240L 0.27 TCGA-EE-A2GI-06 16 4723511 4723511 G A MGRN1 Missense_Mutation p.E270K 0.28 deleterious(0.03) possibly_damaging(0.59) TCGA-EE-A2GI-06 16 4847391 4847391 T C ROGDI 3'UTR 0.45 TCGA-EE-A2GI-06 16 4927076 4927076 C T UBN1 Missense_Mutation p.P1077S 0.42 tolerated(0.23) probably_damaging(0.998) TCGA-EE-A2GI-06 16 49671166 49671166 G A ZNF423 Missense_Mutation p.P633S 0.33 tolerated(0.07) possibly_damaging(0.602) TCGA-EE-A2GI-06 16 50347965 50347965 G A ADCY7 Missense_Mutation p.E950K 0.31 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A2GI-06 16 50733553 50733553 C T NOD2 Silent p.L76L 0.29 TCGA-EE-A2GI-06 16 51175015 51175015 G A SALL1 Missense_Mutation p.S373L 0.32 deleterious(0) benign(0.178) TCGA-EE-A2GI-06 16 51175780 51175780 C T SALL1 Missense_Mutation p.G118E 0.36 tolerated(0.62) benign(0.034) TCGA-EE-A2GI-06 16 53679563 53679563 G A RPGRIP1L Missense_Mutation p.S886L 0.36 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A2GI-06 16 55725938 55725938 G A SLC6A2 Missense_Mutation p.D298N 0.34 tolerated(0.34) probably_damaging(0.941) TCGA-EE-A2GI-06 16 55855416 55855416 C T CES1 Missense_Mutation p.S186N 0.34 deleterious(0) possibly_damaging(0.783) TCGA-EE-A2GI-06 16 56397846 56397846 G A AMFR Nonsense_Mutation p.Q591* 0.26 TCGA-EE-A2GI-06 16 57931750 57931750 C T CNGB1 Silent p.G1015G 0.30 TCGA-EE-A2GI-06 16 58079018 58079018 C T MMP15 Nonsense_Mutation p.Q560* 0.45 TCGA-EE-A2GI-06 16 66431897 66431897 G A CDH5 Missense_Mutation p.G458E 0.29 tolerated(0.1) probably_damaging(0.938) TCGA-EE-A2GI-06 16 66995193 66995193 G A CES3 5'UTR 0.34 TCGA-EE-A2GI-06 16 67006379 67006379 C T CES3 Missense_Mutation p.P471L 0.30 tolerated(0.56) probably_damaging(0.996) TCGA-EE-A2GI-06 16 67222706 67222706 C T EXOC3L1 Silent p.Q115Q 0.44 TCGA-EE-A2GI-06 16 67694047 67694047 G A ACD Missense_Mutation p.P112L 0.33 tolerated(0.07) probably_damaging(0.991) TCGA-EE-A2GI-06 16 68265548 68265548 G A ESRP2 Missense_Mutation p.P450L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GI-06 16 70697942 70697942 G A MTSS1L Missense_Mutation p.P628S 0.45 tolerated(0.48) benign(0.021) TCGA-EE-A2GI-06 16 71509172 71509172 G T ZNF19 Silent p.S426S 0.19 TCGA-EE-A2GI-06 16 71509173 71509173 G T ZNF19 Missense_Mutation p.S426Y 0.20 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A2GI-06 16 71570936 71570936 G A CHST4 Missense_Mutation p.R119K 0.30 tolerated(0.73) benign(0.002) TCGA-EE-A2GI-06 16 77356242 77356242 C T ADAMTS18 Silent p.G718G 0.26 TCGA-EE-A2GI-06 16 77389870 77389870 G A ADAMTS18 Missense_Mutation p.S476F 0.21 tolerated(0.1) benign(0.076) TCGA-EE-A2GI-06 16 77910297 77910297 G A VAT1L Silent p.L251L 0.31 TCGA-EE-A2GI-06 16 77918642 77918642 G A VAT1L Silent p.G340G 0.35 TCGA-EE-A2GI-06 16 789655 789655 G A NARFL Silent p.F50F 0.41 TCGA-EE-A2GI-06 16 80718436 80718436 G A CDYL2 Silent p.L205L 0.39 TCGA-EE-A2GI-06 16 81077961 81077961 C T ATMIN Missense_Mutation p.P620S 0.36 tolerated(0.53) benign(0.009) TCGA-EE-A2GI-06 16 81181949 81181949 G A PKD1L2 RNA 0.25 TCGA-EE-A2GI-06 16 82033001 82033001 G A SDR42E1 Silent p.F299F 0.30 TCGA-EE-A2GI-06 16 82034479 82034479 G A SDR42E1 5'UTR 0.31 TCGA-EE-A2GI-06 16 83704458 83704458 G A CDH13 Missense_Mutation p.D436N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 16 84900627 84900627 C T CRISPLD2 Silent p.T278T 0.28 TCGA-EE-A2GI-06 16 85955012 85955012 A T IRF8 3'UTR 0.64 TCGA-EE-A2GI-06 16 89249980 89249980 G A CDH15 Missense_Mutation p.G128R 0.35 tolerated(0.13) probably_damaging(0.997) TCGA-EE-A2GI-06 16 89350734 89350734 G A ANKRD11 Missense_Mutation p.S739L 0.34 benign(0.019) TCGA-EE-A2GI-06 16 89590484 89590484 G A SPG7 Silent p.A149A 0.23 TCGA-EE-A2GI-06 16 90075245 90075245 G A DBNDD1 Missense_Mutation p.A109V 0.43 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2GI-06 16 90097793 90097793 C T GAS8 Silent p.I59I 0.43 TCGA-EE-A2GI-06 16 9858202 9858202 G A GRIN2A Missense_Mutation p.R1067W 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 17 10267752 10267752 G A MYH13 Silent p.F32F 0.43 TCGA-EE-A2GI-06 17 10296203 10296203 G A MYH8 Missense_Mutation p.A1803V 0.63 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A2GI-06 17 10319000 10319000 G A MYH8 Silent p.I179I 0.46 TCGA-EE-A2GI-06 17 10408608 10408608 G A MYH1 Silent p.F769F 0.40 TCGA-EE-A2GI-06 17 11725779 11725779 G A DNAH9 Missense_Mutation p.G2959R 0.37 probably_damaging(0.999) TCGA-EE-A2GI-06 17 12639642 12639642 G A MYOCD Missense_Mutation p.G194R 0.51 deleterious(0.02) possibly_damaging(0.847) TCGA-EE-A2GI-06 17 1555054 1555054 G A PRPF8 Missense_Mutation p.P2133L 0.53 tolerated(0.19) benign(0.118) TCGA-EE-A2GI-06 17 1650749 1650749 C T SERPINF2 Missense_Mutation p.L220F 0.47 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 17 16525964 16525964 G A ZNF624 Missense_Mutation p.H746Y 0.50 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GI-06 17 16593786 16593786 G A CCDC144A Silent p.R24R 0.48 TCGA-EE-A2GI-06 17 17699091 17699091 G A RAI1 Silent p.E943E 0.56 TCGA-EE-A2GI-06 17 17701531 17701531 C T RAI1 Missense_Mutation p.P1757S 0.53 tolerated(0.62) benign(0.004) TCGA-EE-A2GI-06 17 18023559 18023559 G A MYO15A Missense_Mutation p.R482Q 0.64 benign(0.238) TCGA-EE-A2GI-06 17 18045051 18045051 C T MYO15A Silent p.V1872V 0.55 TCGA-EE-A2GI-06 17 19584970 19584970 C T SLC47A2 Missense_Mutation p.G429E 0.59 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 17 2317704 2317704 G A AC006435.1 Missense_Mutation p.P78S 0.41 unknown(0) TCGA-EE-A2GI-06 17 25948988 25948988 G A KSR1 3'UTR 0.52 TCGA-EE-A2GI-06 17 26685996 26685996 T C TMEM199 Missense_Mutation p.V90A 0.47 tolerated(0.07) possibly_damaging(0.458) TCGA-EE-A2GI-06 17 26817355 26817355 G A SLC13A2 Missense_Mutation p.E88K 0.54 tolerated_low_confidence(0.64) benign(0.001) TCGA-EE-A2GI-06 17 26851738 26851738 G A FOXN1 Missense_Mutation p.R114Q 0.62 deleterious_low_confidence(0) benign(0.181) TCGA-EE-A2GI-06 17 27240100 27240100 G A PHF12 Missense_Mutation p.P497S 0.44 tolerated(0.48) benign(0.004) TCGA-EE-A2GI-06 17 28120914 28120914 C T SSH2 Silent p.R35R 0.59 TCGA-EE-A2GI-06 17 29665053 29665053 C T NF1 Nonsense_Mutation p.Q2239* 0.59 TCGA-EE-A2GI-06 17 2995854 2995854 G A OR1D2 Missense_Mutation p.S146F 0.42 tolerated(0.14) benign(0.014) TCGA-EE-A2GI-06 17 3195632 3195632 G A OR3A1 Missense_Mutation p.P82L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 17 33353483 33353483 G A RFFL Silent p.S30S 0.55 TCGA-EE-A2GI-06 17 34864909 34864909 G - MYO19 Frame_Shift_Del p.T408Ifs*3 0.27 TCGA-EE-A2GI-06 17 35797851 35797851 C T TADA2A Missense_Mutation p.P69S 0.54 tolerated(0.22) benign(0.17) TCGA-EE-A2GI-06 17 36484369 36484369 C T GPR179 Missense_Mutation p.E1695K 0.49 deleterious(0.02) benign(0.293) TCGA-EE-A2GI-06 17 37809760 37809760 C T STARD3 5'UTR 0.65 TCGA-EE-A2GI-06 17 38031605 38031605 T C ZPBP2 Silent p.S269S 0.45 TCGA-EE-A2GI-06 17 39023203 39023203 C T KRT12 Missense_Mutation p.G79E 0.57 tolerated(0.06) unknown(0) TCGA-EE-A2GI-06 17 39920986 39920986 G A JUP Silent p.L379L 0.34 TCGA-EE-A2GI-06 17 40344262 40344262 C T GHDC Missense_Mutation p.G296R 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GI-06 17 42156613 42156613 G A HDAC5 Silent p.L994L 0.35 TCGA-EE-A2GI-06 17 42476474 42476474 C T GPATCH8 Missense_Mutation p.D991N 0.65 tolerated(0.24) unknown(0) TCGA-EE-A2GI-06 17 42476475 42476475 C T GPATCH8 Silent p.R990R 0.68 TCGA-EE-A2GI-06 17 43323944 43323944 G A FMNL1 Missense_Mutation p.G1095E 0.33 tolerated(0.29) possibly_damaging(0.533) TCGA-EE-A2GI-06 17 4540538 4540538 C T ALOX15 Missense_Mutation p.E275K 0.51 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2GI-06 17 4576309 4576309 G A PELP1 Silent p.P659P 0.46 TCGA-EE-A2GI-06 17 4576310 4576310 G A PELP1 Missense_Mutation p.P659L 0.44 possibly_damaging(0.713) TCGA-EE-A2GI-06 17 45888181 45888181 G T OSBPL7 Silent p.I586I 0.36 TCGA-EE-A2GI-06 17 45915240 45915240 G A SCRN2 Silent p.F416F 0.65 TCGA-EE-A2GI-06 17 4692404 4692404 G A GLTPD2 Missense_Mutation p.R33Q 0.71 tolerated_low_confidence(0.38) benign(0.003) TCGA-EE-A2GI-06 17 47300000 47300000 T A ABI3 Missense_Mutation p.S342T 0.50 tolerated(0.2) benign(0.418) TCGA-EE-A2GI-06 17 4926874 4926874 C T KIF1C Missense_Mutation p.P914S 0.55 tolerated_low_confidence(0.61) benign(0) TCGA-EE-A2GI-06 17 5425088 5425088 G A NLRP1 Missense_Mutation p.S1180F 0.42 tolerated(0.12) possibly_damaging(0.819) TCGA-EE-A2GI-06 17 56404061 56404061 C T BZRAP1 Missense_Mutation p.E142K 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GI-06 17 56692691 56692691 C T TEX14 Silent p.G267G 0.35 TCGA-EE-A2GI-06 17 57287389 57287389 G A SMG8 5'UTR 0.30 TCGA-EE-A2GI-06 17 57287390 57287390 G A SMG8 5'UTR 0.32 TCGA-EE-A2GI-06 17 58300780 58300780 G A USP32 Missense_Mutation p.P534S 0.29 tolerated(0.58) probably_damaging(0.996) TCGA-EE-A2GI-06 17 59556019 59556019 C A TBX4 Missense_Mutation p.P194Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GI-06 17 60030366 60030366 G A MED13 Missense_Mutation p.S2026F 0.35 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2GI-06 17 60689856 60689856 C T TLK2 Missense_Mutation p.S728F 0.34 deleterious(0.01) benign(0.266) TCGA-EE-A2GI-06 17 61432354 61432354 C T TANC2 Silent p.L655L 0.35 TCGA-EE-A2GI-06 17 61958757 61958757 G A GH2 Missense_Mutation p.R45C 0.31 deleterious(0.04) probably_damaging(0.989) TCGA-EE-A2GI-06 17 61987797 61987797 C T CSHL1 Missense_Mutation p.E97K 0.42 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2GI-06 17 64734896 64734896 C T PRKCA Silent p.F415F 0.41 TCGA-EE-A2GI-06 17 6493149 6493149 G A KIAA0753 Silent p.I912I 0.54 TCGA-EE-A2GI-06 17 65116564 65116564 T C HELZ Silent p.Q1265Q 0.27 TCGA-EE-A2GI-06 17 65850238 65850238 C T BPTF Missense_Mutation p.R266C 0.26 benign(0.021) TCGA-EE-A2GI-06 17 66871424 66871424 G A ABCA8 Silent p.F1496F 0.37 TCGA-EE-A2GI-06 17 67092380 67092381 - A ABCA6 Frame_Shift_Ins p.A1137Cfs*15 0.26 TCGA-EE-A2GI-06 17 67152008 67152008 C T ABCA10 Missense_Mutation p.E1172K 0.44 deleterious(0.01) possibly_damaging(0.56) TCGA-EE-A2GI-06 17 6716248 6716248 C T TEKT1 Missense_Mutation p.D252N 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 17 67515502 67515502 G A MAP2K6 Missense_Mutation p.D99N 0.36 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GI-06 17 6981423 6981423 G A CLEC10A Missense_Mutation p.P26L 0.49 deleterious(0.02) benign(0.346) TCGA-EE-A2GI-06 17 71080986 71080986 C T SLC39A11 Splice_Site p.X37_splice 0.27 TCGA-EE-A2GI-06 17 71354253 71354253 G A SDK2 Missense_Mutation p.P1853L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 17 7155804 7155804 G A ELP5 5'UTR 0.56 TCGA-EE-A2GI-06 17 72338033 72338033 C T KIF19 Missense_Mutation p.P47S 0.29 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GI-06 17 72350632 72350632 G A KIF19 Silent p.R880R 0.32 TCGA-EE-A2GI-06 17 73500746 73500746 C T CASKIN2 Silent p.E407E 0.67 TCGA-EE-A2GI-06 17 7369619 7369619 G A ZBTB4 Missense_Mutation p.R168C 0.60 possibly_damaging(0.876) TCGA-EE-A2GI-06 17 73759118 73759118 G A GALK1 Silent p.G196G 0.35 TCGA-EE-A2GI-06 17 74470605 74470605 G A RHBDF2 Silent p.I467I 0.33 TCGA-EE-A2GI-06 17 74557740 74557740 C T ST6GALNAC2 3'Flank 0.33 TCGA-EE-A2GI-06 17 74557741 74557741 C T ST6GALNAC2 3'Flank 0.33 TCGA-EE-A2GI-06 17 74639743 74639743 G A ST6GALNAC1 5'UTR 0.42 TCGA-EE-A2GI-06 17 74928858 74928858 G A MGAT5B Splice_Site p.X485_splice 0.30 TCGA-EE-A2GI-06 17 76212781 76212781 C T BIRC5 Silent p.F109F 0.30 TCGA-EE-A2GI-06 17 76497195 76497195 G A DNAH17-AS1 3'UTR 0.33 TCGA-EE-A2GI-06 17 7695641 7695641 G A DNAH2 Silent p.K2375K 0.58 TCGA-EE-A2GI-06 17 7752023 7752023 C T KDM6B Missense_Mutation p.S806F 0.63 unknown(0) TCGA-EE-A2GI-06 17 77808070 77808070 G A CBX4 Silent p.L457L 0.21 TCGA-EE-A2GI-06 17 78063628 78063628 C T CCDC40 Missense_Mutation p.S926F 0.55 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A2GI-06 17 7808467 7808467 C T CHD3 Silent p.F1433F 0.52 TCGA-EE-A2GI-06 17 78184718 78184718 G A SGSH Missense_Mutation p.L348F 0.36 tolerated(0.22) possibly_damaging(0.903) TCGA-EE-A2GI-06 17 78247135 78247135 C T RNF213 Missense_Mutation p.P65S 0.32 benign(0.002) TCGA-EE-A2GI-06 17 78444653 78444653 G A NPTX1 Missense_Mutation p.A420V 0.31 tolerated(0.25) benign(0.401) TCGA-EE-A2GI-06 17 79414171 79414171 G A RP11-1055B8.7 Silent p.P1091P 0.40 TCGA-EE-A2GI-06 17 79650906 79650906 C T ARL16 5'UTR 0.34 TCGA-EE-A2GI-06 17 79864690 79864690 C T PCYT2 Missense_Mutation p.E226K 0.29 tolerated(0.45) benign(0.142) TCGA-EE-A2GI-06 17 7990686 7990686 G A ALOX12B Silent p.T25T 0.58 TCGA-EE-A2GI-06 17 79913410 79913410 G A NOTUM Silent p.F333F 0.23 TCGA-EE-A2GI-06 17 80039891 80039891 G A FASN Missense_Mutation p.L2053F 0.34 tolerated(0.09) benign(0.069) TCGA-EE-A2GI-06 17 80039892 80039892 G A FASN Silent p.G2052G 0.32 TCGA-EE-A2GI-06 17 80369398 80369398 G A OGFOD3 Missense_Mutation p.P105S 0.34 deleterious(0.02) probably_damaging(0.957) TCGA-EE-A2GI-06 17 8218223 8218223 G A ARHGEF15 Splice_Site p.X330_splice 0.44 TCGA-EE-A2GI-06 17 8222664 8222664 A G ARHGEF15 Missense_Mutation p.T741A 0.64 tolerated(0.19) benign(0.343) TCGA-EE-A2GI-06 17 8660636 8660636 C T SPDYE4 Missense_Mutation p.R95Q 0.36 tolerated(0.12) benign(0.238) TCGA-EE-A2GI-06 17 9683210 9683210 T C DHRS7C Missense_Mutation p.K138R 0.38 deleterious(0.03) benign(0.284) TCGA-EE-A2GI-06 18 13073048 13073048 A G CEP192 Missense_Mutation p.N1827S 0.09 tolerated(0.16) benign(0.297) TCGA-EE-A2GI-06 18 21453120 21453120 C T LAMA3 Intron 0.54 TCGA-EE-A2GI-06 18 22048792 22048792 C T HRH4 Silent p.F78F 0.09 TCGA-EE-A2GI-06 18 28710629 28710629 C T DSC1 Missense_Mutation p.D845N 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 18 43258959 43258959 G A SLC14A2 Silent p.L844L 0.59 TCGA-EE-A2GI-06 18 43258960 43258960 G A SLC14A2 Missense_Mutation p.G845S 0.59 tolerated(0.07) possibly_damaging(0.6) TCGA-EE-A2GI-06 18 46784834 46784834 T C DYM Silent p.E427E 0.52 TCGA-EE-A2GI-06 18 47769408 47769408 C T CCDC11 Missense_Mutation p.E359K 0.54 deleterious(0.02) benign(0.21) TCGA-EE-A2GI-06 18 55361813 55361813 C T ATP8B1 Splice_Site p.X343_splice 0.58 TCGA-EE-A2GI-06 18 56196448 56196448 G A ALPK2 Silent p.I1792I 0.50 TCGA-EE-A2GI-06 18 59221748 59221748 C T CDH20 Silent p.F742F 0.54 TCGA-EE-A2GI-06 18 6093507 6093507 G A L3MBTL4 Missense_Mutation p.S407L 0.58 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 18 61565055 61565055 C T SERPINB2 Missense_Mutation p.S171F 0.75 deleterious(0.02) benign(0.29) TCGA-EE-A2GI-06 18 65180090 65180090 G A DSEL Missense_Mutation p.H596Y 0.33 deleterious(0) probably_damaging(0.942) TCGA-EE-A2GI-06 18 72589239 72589239 C T ZNF407 Missense_Mutation p.P1655L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 18 74607011 74607011 C T ZNF236 Missense_Mutation p.P485L 0.43 tolerated(0.12) benign(0.027) TCGA-EE-A2GI-06 18 8825784 8825784 C T SOGA2 Missense_Mutation p.R1426C 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 19 10099813 10099813 G A COL5A3 Missense_Mutation p.P711L 0.47 unknown(0) TCGA-EE-A2GI-06 19 10100192 10100192 G A COL5A3 Missense_Mutation p.P667S 0.20 unknown(0) TCGA-EE-A2GI-06 19 10230579 10230579 G A EIF3G 5'Flank 0.28 TCGA-EE-A2GI-06 19 10502334 10502334 G A CDC37 Missense_Mutation p.P344S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 19 10664854 10664854 G A KRI1 Missense_Mutation p.P635S 0.23 tolerated(0.22) benign(0.003) TCGA-EE-A2GI-06 19 10794763 10794763 C T ILF3 Intron 0.33 TCGA-EE-A2GI-06 19 10823442 10823442 C T QTRT1 Silent p.G290G 0.41 TCGA-EE-A2GI-06 19 11411966 11411966 G A TSPAN16 Nonsense_Mutation p.W144* 0.41 TCGA-EE-A2GI-06 19 11453514 11453514 C T TMEM205 Missense_Mutation p.A183T 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 19 11473267 11473267 G A DKFZP761J1410 Missense_Mutation p.A223T 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2GI-06 19 13011463 13011463 C T SYCE2 Splice_Site p.X103_splice 0.15 TCGA-EE-A2GI-06 19 13226254 13226254 C T TRMT1 Silent p.L160L 0.26 TCGA-EE-A2GI-06 19 14231322 14231322 G A ASF1B Silent p.L186L 0.11 TCGA-EE-A2GI-06 19 1487857 1487857 G A PCSK4 Missense_Mutation p.P174S 0.38 tolerated(0.12) possibly_damaging(0.762) TCGA-EE-A2GI-06 19 15083648 15083648 C T SLC1A6 Silent p.R25R 0.33 TCGA-EE-A2GI-06 19 15164592 15164592 G A CASP14 Missense_Mutation p.E76K 0.43 tolerated(1) benign(0.015) TCGA-EE-A2GI-06 19 15302454 15302454 C T NOTCH3 Missense_Mutation p.E273K 0.20 deleterious(0.03) possibly_damaging(0.566) TCGA-EE-A2GI-06 19 15302455 15302455 C T NOTCH3 Silent p.T272T 0.20 TCGA-EE-A2GI-06 19 15338587 15338587 G A EPHX3 Silent p.L284L 0.41 TCGA-EE-A2GI-06 19 15483046 15483046 C A AKAP8 Missense_Mutation p.G325V 0.18 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GI-06 19 15794303 15794303 G A CYP4F12 Silent p.E216E 0.26 TCGA-EE-A2GI-06 19 15918298 15918298 G A OR10H1 Silent p.L184L 0.16 TCGA-EE-A2GI-06 19 17057916 17057916 G A CPAMD8 Missense_Mutation p.S924F 0.21 deleterious(0.02) possibly_damaging(0.837) TCGA-EE-A2GI-06 19 17186281 17186281 G A HAUS8 5'UTR 0.22 TCGA-EE-A2GI-06 19 17937601 17937601 G A JAK3 Missense_Mutation p.A1109V 0.38 tolerated_low_confidence(0.32) benign(0.002) TCGA-EE-A2GI-06 19 18004596 18004596 C T SLC5A5 Silent p.F614F 0.38 TCGA-EE-A2GI-06 19 18499399 18499399 G A GDF15 Missense_Mutation p.R194K 0.27 tolerated(0.76) benign(0.001) TCGA-EE-A2GI-06 19 19165050 19165050 G A ARMC6 Missense_Mutation p.D315N 0.14 tolerated(0.08) benign(0.081) TCGA-EE-A2GI-06 19 19334892 19334892 G A NCAN Missense_Mutation p.E180K 0.23 deleterious(0.01) possibly_damaging(0.689) TCGA-EE-A2GI-06 19 19338311 19338311 C T NCAN Missense_Mutation p.P628S 0.48 tolerated(0.58) benign(0.212) TCGA-EE-A2GI-06 19 19349202 19349202 G A NCAN Missense_Mutation p.E1131K 0.36 deleterious(0) probably_damaging(0.938) TCGA-EE-A2GI-06 19 19654632 19654632 C T CILP2 Silent p.S426S 0.20 TCGA-EE-A2GI-06 19 20002699 20002699 C T ZNF253 Missense_Mutation p.L215F 0.27 tolerated(0.12) probably_damaging(1) TCGA-EE-A2GI-06 19 2043508 2043508 C T MKNK2 Missense_Mutation p.G138E 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GI-06 19 2043509 2043509 C T MKNK2 Missense_Mutation p.G138R 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GI-06 19 20959256 20959256 G A ZNF66 Translation_Start_Site p.M1? 0.16 deleterious(0.02) benign(0.088) TCGA-EE-A2GI-06 19 21239688 21239688 C T ZNF430 Missense_Mutation p.P192S 0.17 tolerated(1) benign(0) TCGA-EE-A2GI-06 19 22002001 22002001 A G ZNF43 Missense_Mutation p.V9A 0.27 deleterious(0) possibly_damaging(0.833) TCGA-EE-A2GI-06 19 22362851 22362851 A T ZNF676 Silent p.T556T 0.20 TCGA-EE-A2GI-06 19 2243485 2243485 A G SF3A2 Missense_Mutation p.N23S 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.596) TCGA-EE-A2GI-06 19 22574947 22574947 G A ZNF98 Missense_Mutation p.H364Y 0.46 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 19 22940086 22940086 C T ZNF99 3'Flank 0.39 TCGA-EE-A2GI-06 19 22941440 22941440 G A ZNF99 Missense_Mutation p.P424L 0.28 deleterious(0.01) benign(0.304) TCGA-EE-A2GI-06 19 23542804 23542804 G A ZNF91 Missense_Mutation p.P993S 0.10 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GI-06 19 288108 288108 C T PPAP2C Missense_Mutation p.G60E 0.16 tolerated(0.09) benign(0.008) TCGA-EE-A2GI-06 19 2989603 2989603 A G TLE6 Missense_Mutation p.N355S 0.12 tolerated(0.22) benign(0.023) TCGA-EE-A2GI-06 19 30934619 30934619 C T ZNF536 Silent p.L50L 0.19 TCGA-EE-A2GI-06 19 31040061 31040061 G A ZNF536 Missense_Mutation p.D1179N 0.27 tolerated_low_confidence(0.22) benign(0.287) TCGA-EE-A2GI-06 19 31040070 31040070 G A ZNF536 Missense_Mutation p.D1182N 0.24 deleterious_low_confidence(0.03) benign(0.388) TCGA-EE-A2GI-06 19 33110260 33110260 G A ANKRD27 Missense_Mutation p.S638F 0.37 tolerated(0.07) possibly_damaging(0.485) TCGA-EE-A2GI-06 19 33119042 33119042 G A ANKRD27 Missense_Mutation p.P456L 0.17 tolerated(0.06) possibly_damaging(0.908) TCGA-EE-A2GI-06 19 33470827 33470827 C T RHPN2 3'UTR 0.37 TCGA-EE-A2GI-06 19 34857254 34857254 A G GPI Missense_Mutation p.T82A 0.25 tolerated_low_confidence(0.42) benign(0.044) TCGA-EE-A2GI-06 19 35551364 35551364 G A HPN Missense_Mutation p.G190R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 19 35757850 35757850 C T LSR Missense_Mutation p.P423L 0.27 tolerated(0.37) benign(0.008) TCGA-EE-A2GI-06 19 36210760 36210760 C T KMT2B Missense_Mutation p.P171S 0.19 unknown(0) TCGA-EE-A2GI-06 19 36212370 36212370 C T KMT2B Silent p.F707F 0.20 TCGA-EE-A2GI-06 19 36217254 36217254 G A KMT2B Missense_Mutation p.G1335R 0.33 probably_damaging(0.996) TCGA-EE-A2GI-06 19 36236335 36236335 C T PSENEN 5'UTR 0.23 TCGA-EE-A2GI-06 19 3623989 3623989 G A CACTIN Silent p.S113S 0.24 TCGA-EE-A2GI-06 19 36350386 36350386 C T KIRREL2 Silent p.L176L 0.37 TCGA-EE-A2GI-06 19 36504285 36504285 G A ALKBH6 Silent p.D33D 0.45 TCGA-EE-A2GI-06 19 36557283 36557283 C T WDR62 Missense_Mutation p.S172F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 19 37118051 37118051 A C ZNF382 Missense_Mutation p.I418L 0.38 tolerated(0.62) probably_damaging(0.994) TCGA-EE-A2GI-06 19 37643778 37643778 G A ZNF585A Silent p.L286L 0.38 TCGA-EE-A2GI-06 19 37676240 37676240 C T ZNF585B Silent p.L733L 0.41 TCGA-EE-A2GI-06 19 37880761 37880761 C T ZNF527 Missense_Mutation p.H604Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 19 38077490 38077490 G A ZNF571 Intron 0.34 TCGA-EE-A2GI-06 19 38934823 38934823 C T RYR1 Silent p.S153S 0.24 TCGA-EE-A2GI-06 19 38959762 38959762 G A RYR1 Missense_Mutation p.E1180K 0.28 possibly_damaging(0.636) TCGA-EE-A2GI-06 19 39096813 39096813 C T MAP4K1 Silent p.K400K 0.30 TCGA-EE-A2GI-06 19 39230812 39230812 G A CAPN12 Missense_Mutation p.A203V 0.26 deleterious(0) benign(0.442) TCGA-EE-A2GI-06 19 39294190 39294190 G A LGALS4 Missense_Mutation p.T181I 0.23 tolerated(0.26) benign(0.001) TCGA-EE-A2GI-06 19 39691002 39691002 C T NCCRP1 Silent p.L189L 0.18 TCGA-EE-A2GI-06 19 3977900 3977900 G A EEF2 Missense_Mutation p.L662F 0.19 tolerated(0.15) possibly_damaging(0.565) TCGA-EE-A2GI-06 19 40364281 40364281 T A FCGBP Silent p.V4787V 0.34 TCGA-EE-A2GI-06 19 40368805 40368805 C T FCGBP Silent p.S4181S 0.20 TCGA-EE-A2GI-06 19 41025348 41025348 G A SPTBN4 Missense_Mutation p.E982K 0.44 tolerated(0.69) benign(0.29) TCGA-EE-A2GI-06 19 41349659 41349659 C T CYP2A6 3'UTR 0.35 TCGA-EE-A2GI-06 19 41386441 41386441 C T CYP2A7 Missense_Mutation p.E146K 0.54 deleterious(0.01) benign(0.206) TCGA-EE-A2GI-06 19 41601812 41601812 C T CYP2A13 Missense_Mutation p.P484L 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GI-06 19 41745213 41745213 C T AXL Missense_Mutation p.R427C 0.20 tolerated(0.06) benign(0.302) TCGA-EE-A2GI-06 19 41758763 41758763 A C AXL Missense_Mutation p.Q606P 0.20 deleterious(0) benign(0.098) TCGA-EE-A2GI-06 19 42301775 42301775 C T CEACAM3 Silent p.L107L 0.20 TCGA-EE-A2GI-06 19 42596305 42596305 G A POU2F2 Missense_Mutation p.P439L 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GI-06 19 42862990 42862990 C T MEGF8 Missense_Mutation p.P1676S 0.20 tolerated_low_confidence(0.3) benign(0) TCGA-EE-A2GI-06 19 42931147 42931147 G A LIPE Missense_Mutation p.A52V 0.23 tolerated_low_confidence(0.18) benign(0.003) TCGA-EE-A2GI-06 19 43371359 43371359 G A PSG1 3'UTR 0.46 TCGA-EE-A2GI-06 19 43579633 43579633 C T PSG2 Silent p.Q194Q 0.37 TCGA-EE-A2GI-06 19 43773533 43773533 C T PSG9 Silent p.G17G 0.37 TCGA-EE-A2GI-06 19 43773535 43773535 C T PSG9 Missense_Mutation p.G17R 0.37 tolerated(0.12) possibly_damaging(0.891) TCGA-EE-A2GI-06 19 44015617 44015617 A C ETHE1 Silent p.R159R 0.13 TCGA-EE-A2GI-06 19 44015618 44015618 C T ETHE1 Missense_Mutation p.R159H 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GI-06 19 44791542 44791542 G A ZNF235 Silent p.P682P 0.31 TCGA-EE-A2GI-06 19 46195227 46195227 C T SNRPD2 5'UTR 0.39 TCGA-EE-A2GI-06 19 46283553 46283553 G A DMPK 5'UTR 0.60 TCGA-EE-A2GI-06 19 46289452 46289452 C T DMWD Silent p.A434A 0.38 TCGA-EE-A2GI-06 19 46393958 46393958 G A MYPOP Missense_Mutation p.P375S 0.20 tolerated_low_confidence(0.39) benign(0.118) TCGA-EE-A2GI-06 19 467741 467741 G A ODF3L2 Missense_Mutation p.P86L 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 19 467742 467742 G C ODF3L2 Missense_Mutation p.P86A 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 19 46825223 46825223 G A HIF3A Silent p.S445S 0.31 TCGA-EE-A2GI-06 19 46878977 46878977 C T PPP5C Silent p.S160S 0.57 TCGA-EE-A2GI-06 19 47124583 47124583 C T PTGIR Missense_Mutation p.G372E 0.33 tolerated_low_confidence(0.08) benign(0.028) TCGA-EE-A2GI-06 19 47259941 47259941 C T FKRP Missense_Mutation p.H412Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GI-06 19 47882968 47882968 C T DHX34 Missense_Mutation p.S903F 0.12 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2GI-06 19 48533786 48533786 G A CABP5 3'UTR 0.17 TCGA-EE-A2GI-06 19 48640337 48640337 G A LIG1 Missense_Mutation p.T420I 0.44 tolerated(0.08) benign(0.081) TCGA-EE-A2GI-06 19 49253686 49253686 C T FUT1 Missense_Mutation p.G285R 0.20 deleterious(0.04) probably_damaging(1) TCGA-EE-A2GI-06 19 49254333 49254333 G A FUT1 Missense_Mutation p.S69F 0.26 deleterious(0.03) possibly_damaging(0.562) TCGA-EE-A2GI-06 19 49299747 49299747 G A BCAT2 Missense_Mutation p.P360S 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 19 49473946 49473946 G C GYS1 Missense_Mutation p.R556G 0.24 deleterious(0.01) possibly_damaging(0.782) TCGA-EE-A2GI-06 19 49994168 49994168 C T RPL13A Intron 0.21 TCGA-EE-A2GI-06 19 50655838 50655838 C T IZUMO2 3'UTR 0.11 TCGA-EE-A2GI-06 19 50926083 50926083 C T SPIB Missense_Mutation p.S43F 0.19 deleterious(0.05) benign(0.388) TCGA-EE-A2GI-06 19 51274318 51274318 C T GPR32 Missense_Mutation p.T154I 0.40 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 19 51503258 51503258 G A KLK8 Missense_Mutation p.P208S 0.24 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A2GI-06 19 51534143 51534143 G A KLK12 Silent p.L164L 0.17 TCGA-EE-A2GI-06 19 51767208 51767208 C T SIGLECL1 5'UTR 0.22 TCGA-EE-A2GI-06 19 51874987 51874987 G A NKG7 3'UTR 0.46 TCGA-EE-A2GI-06 19 51874988 51874988 G A NKG7 3'UTR 0.46 TCGA-EE-A2GI-06 19 51919420 51919420 G A SIGLEC10 Silent p.A252A 0.31 TCGA-EE-A2GI-06 19 51955867 51955867 C T SIGLEC8 Nonsense_Mutation p.W422* 0.08 TCGA-EE-A2GI-06 19 52001296 52001296 G A SIGLEC12 Missense_Mutation p.L461F 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GI-06 19 52002866 52002866 G A SIGLEC12 Missense_Mutation p.P305S 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GI-06 19 52002945 52002945 G A SIGLEC12 Silent p.S278S 0.45 TCGA-EE-A2GI-06 19 52132613 52132613 G A SIGLEC5 Missense_Mutation p.S233F 0.32 deleterious(0) possibly_damaging(0.561) TCGA-EE-A2GI-06 19 52887591 52887591 C T ZNF880 Missense_Mutation p.S253L 0.29 deleterious(0.04) possibly_damaging(0.758) TCGA-EE-A2GI-06 19 52919202 52919202 C T ZNF528 Missense_Mutation p.S366F 0.19 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A2GI-06 19 53014273 53014273 C T ZNF578 Silent p.F213F 0.33 TCGA-EE-A2GI-06 19 53014574 53014574 C T ZNF578 Missense_Mutation p.P314S 0.43 deleterious(0.02) benign(0.009) TCGA-EE-A2GI-06 19 53057062 53057062 A C ZNF808 Missense_Mutation p.Y298S 0.25 tolerated(0.2) benign(0.077) TCGA-EE-A2GI-06 19 53418540 53418540 G A ZNF888 RNA 0.14 TCGA-EE-A2GI-06 19 53770535 53770535 G A VN1R4 Silent p.G128G 0.29 TCGA-EE-A2GI-06 19 54219879 54219879 T A MIR521-2 RNA 0.41 TCGA-EE-A2GI-06 19 54318225 54318225 G A NLRP12 Missense_Mutation p.P103S 0.38 tolerated(0.64) benign(0.002) TCGA-EE-A2GI-06 19 54327271 54327271 G A NLRP12 Missense_Mutation p.P53L 0.21 tolerated(0.16) probably_damaging(0.99) TCGA-EE-A2GI-06 19 54600214 54600214 C T OSCAR Missense_Mutation p.R107Q 0.18 tolerated(0.35) benign(0.066) TCGA-EE-A2GI-06 19 54649503 54649503 A T CNOT3 Missense_Mutation p.D218V 0.27 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GI-06 19 54649504 54649504 C T CNOT3 Silent p.D218D 0.27 TCGA-EE-A2GI-06 19 54676769 54676769 G A TMC4 Missense_Mutation p.S15F 0.18 deleterious(0.02) benign(0.024) TCGA-EE-A2GI-06 19 54759988 54759988 C T LILRB5 Nonsense_Mutation p.W191* 0.21 TCGA-EE-A2GI-06 19 54803096 54803096 G A LILRA3 Missense_Mutation p.S194L 0.25 deleterious(0.01) benign(0.008) TCGA-EE-A2GI-06 19 54849227 54849227 G A LILRA4 Missense_Mutation p.P212L 0.40 tolerated(0.37) benign(0.016) TCGA-EE-A2GI-06 19 54849831 54849831 C T LILRA4 Missense_Mutation p.G64E 0.25 deleterious(0.05) possibly_damaging(0.569) TCGA-EE-A2GI-06 19 55021819 55021819 G A LAIR2 3'UTR 0.31 TCGA-EE-A2GI-06 19 55107847 55107847 G A LILRA1 Missense_Mutation p.M384I 0.39 tolerated(0.08) benign(0.127) TCGA-EE-A2GI-06 19 55146159 55146159 C T LILRB1 Silent p.L477L 0.50 TCGA-EE-A2GI-06 19 55175267 55175267 G A LILRB4 Silent p.G42G 0.50 TCGA-EE-A2GI-06 19 55329935 55329935 G A KIR3DL1 Missense_Mutation p.S79N 0.20 tolerated(0.62) benign(0.024) TCGA-EE-A2GI-06 19 55341774 55341774 G A KIR3DL1 3'UTR 0.39 TCGA-EE-A2GI-06 19 55363556 55363556 C T KIR3DL2 Silent p.F58F 0.59 TCGA-EE-A2GI-06 19 55451188 55451188 G A NLRP7 Silent p.F333F 0.36 TCGA-EE-A2GI-06 19 55525913 55525913 G A GP6 Missense_Mutation p.S467F 0.21 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A2GI-06 19 55966676 55966676 C T ISOC2 Missense_Mutation p.D140N 0.55 tolerated(0.14) benign(0.415) TCGA-EE-A2GI-06 19 56297047 56297047 G A NLRP11 Missense_Mutation p.P1016S 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A2GI-06 19 56321174 56321174 C T NLRP11 Missense_Mutation p.A268T 0.49 tolerated(0.17) probably_damaging(0.958) TCGA-EE-A2GI-06 19 56369416 56369416 C T NLRP4 Silent p.I219I 0.39 TCGA-EE-A2GI-06 19 56424543 56424543 C T NLRP13 Missense_Mutation p.E214K 0.42 tolerated(0.21) possibly_damaging(0.815) TCGA-EE-A2GI-06 19 56443522 56443522 G A NLRP13 Silent p.F52F 0.22 TCGA-EE-A2GI-06 19 56572922 56572922 C T NLRP5 3'UTR 0.26 TCGA-EE-A2GI-06 19 56701130 56701130 G A ZSCAN5B 3'UTR 0.26 TCGA-EE-A2GI-06 19 56704104 56704104 C T ZSCAN5B Silent p.V106V 0.26 TCGA-EE-A2GI-06 19 57035811 57035811 G A ZNF471 Nonsense_Mutation p.W125* 0.17 TCGA-EE-A2GI-06 19 57327492 57327492 G A PEG3 Missense_Mutation p.S773L 0.37 tolerated(0.1) benign(0.065) TCGA-EE-A2GI-06 19 57641808 57641808 G A USP29 Missense_Mutation p.D589N 0.39 tolerated(0.1) possibly_damaging(0.754) TCGA-EE-A2GI-06 19 57642603 57642603 T C USP29 Missense_Mutation p.F854L 0.28 tolerated(0.13) probably_damaging(0.994) TCGA-EE-A2GI-06 19 57723539 57723539 C T ZNF264 Silent p.L358L 0.18 TCGA-EE-A2GI-06 19 5844661 5844661 G A FUT3 Silent p.L64L 0.38 TCGA-EE-A2GI-06 19 59080689 59080689 G A MZF1 Missense_Mutation p.P243S 0.34 tolerated(0.16) benign(0.008) TCGA-EE-A2GI-06 19 5921218 5921218 G A RANBP3 Nonsense_Mutation p.R442* 0.26 TCGA-EE-A2GI-06 19 6924760 6924760 C T EMR1 Silent p.I621I 0.31 TCGA-EE-A2GI-06 19 7670259 7670259 C T CAMSAP3 Missense_Mutation p.P99L 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2GI-06 19 8922239 8922239 C T ZNF558 Silent p.Q309Q 0.21 TCGA-EE-A2GI-06 19 8994429 8994429 G A MUC16 Silent p.V13821V 0.14 TCGA-EE-A2GI-06 19 8997151 8997151 G A MUC16 Missense_Mutation p.P13682L 0.26 possibly_damaging(0.797) TCGA-EE-A2GI-06 19 9046048 9046048 C T MUC16 Missense_Mutation p.M11861I 0.16 benign(0.145) TCGA-EE-A2GI-06 19 9046526 9046526 G A MUC16 Missense_Mutation p.S11702F 0.21 benign(0.063) TCGA-EE-A2GI-06 19 9048749 9048749 G A MUC16 Missense_Mutation p.T10961I 0.12 possibly_damaging(0.607) TCGA-EE-A2GI-06 19 9067634 9067634 C T MUC16 Silent p.K6604K 0.25 TCGA-EE-A2GI-06 19 9069682 9069682 C T MUC16 Missense_Mutation p.E5922K 0.19 unknown(0) TCGA-EE-A2GI-06 19 9074913 9074913 G A MUC16 Missense_Mutation p.S4178L 0.19 unknown(0) TCGA-EE-A2GI-06 19 9082925 9082925 C T MUC16 Missense_Mutation p.G2964R 0.39 unknown(0) TCGA-EE-A2GI-06 19 9088751 9088751 G A MUC16 Missense_Mutation p.L1022F 0.17 unknown(0) TCGA-EE-A2GI-06 19 9090523 9090523 C T MUC16 Missense_Mutation p.G431E 0.24 unknown(0) TCGA-EE-A2GI-06 19 9271287 9271287 C T ZNF317 Silent p.I322I 0.10 TCGA-EE-A2GI-06 19 9297116 9297116 G A OR7D2 Missense_Mutation p.R220Q 0.40 tolerated_low_confidence(0.68) benign(0.01) TCGA-EE-A2GI-06 19 9362401 9362401 C T OR7E24 Missense_Mutation p.P228S 0.17 deleterious(0.04) possibly_damaging(0.654) TCGA-EE-A2GI-06 19 9453434 9453434 C T ZNF559 Missense_Mutation p.P436L 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 19 9577333 9577333 C T ZNF560 Missense_Mutation p.G764R 0.13 tolerated(0.08) probably_damaging(0.995) TCGA-EE-A2GI-06 19 9581123 9581123 C T ZNF560 Silent p.Q131Q 0.20 TCGA-EE-A2GI-06 19 9640026 9640026 G A ZNF426 Missense_Mutation p.S232F 0.37 deleterious(0.02) benign(0.012) TCGA-EE-A2GI-06 19 9949200 9949200 G A PIN1 Silent p.Q49Q 0.39 TCGA-EE-A2GI-06 19 9967558 9967558 G C OLFM2 Silent p.P204P 0.31 TCGA-EE-A2GI-06 1 101198228 101198228 T - VCAM1 Frame_Shift_Del p.L594* 0.28 TCGA-EE-A2GI-06 1 103491503 103491503 C T COL11A1 Intron 0.30 TCGA-EE-A2GI-06 1 110163638 110163638 G A AMPD2 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(1) unknown(0) TCGA-EE-A2GI-06 1 11017675 11017675 C T C1orf127 Missense_Mutation p.E231K 0.51 tolerated(0.14) benign(0.058) TCGA-EE-A2GI-06 1 110596619 110596619 C G STRIP1 3'UTR 0.39 TCGA-EE-A2GI-06 1 111493978 111493978 T C LRIF1 Missense_Mutation p.I510V 0.30 tolerated(0.1) benign(0.274) TCGA-EE-A2GI-06 1 111778695 111778695 G A CHI3L2 Missense_Mutation p.E219K 0.31 deleterious(0.01) possibly_damaging(0.472) TCGA-EE-A2GI-06 1 112002250 112002250 A T ATP5F1 Missense_Mutation p.T229S 0.36 deleterious(0.01) benign(0.063) TCGA-EE-A2GI-06 1 112002251 112002251 C T ATP5F1 Missense_Mutation p.T229I 0.37 deleterious(0) benign(0.061) TCGA-EE-A2GI-06 1 114400246 114400246 G A PTPN22 Intron 0.31 TCGA-EE-A2GI-06 1 114973461 114973461 C A TRIM33 Nonsense_Mutation p.E372* 0.35 TCGA-EE-A2GI-06 1 115142866 115142866 G A DENND2C Silent p.L688L 0.35 TCGA-EE-A2GI-06 1 115218600 115218600 G A AMPD1 Silent p.F504F 0.29 TCGA-EE-A2GI-06 1 115219982 115219982 G A AMPD1 Missense_Mutation p.P493S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 1 115615584 115615584 G A TSPAN2 Silent p.F38F 0.35 TCGA-EE-A2GI-06 1 11579534 11579534 C T PTCHD2 Missense_Mutation p.P671L 0.44 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GI-06 1 118413146 118413146 A C GDAP2 3'UTR 0.40 TCGA-EE-A2GI-06 1 119428085 119428085 G A TBX15 Missense_Mutation p.S254L 0.27 tolerated(0.21) probably_damaging(0.978) TCGA-EE-A2GI-06 1 120050077 120050077 G A HSD3B1 5'UTR 0.40 TCGA-EE-A2GI-06 1 12034862 12034862 C T PLOD1 Silent p.P727P 0.57 TCGA-EE-A2GI-06 1 120437582 120437582 C T ADAM30 Missense_Mutation p.E460K 0.35 tolerated(0.22) benign(0.264) TCGA-EE-A2GI-06 1 120437739 120437739 C T ADAM30 Silent p.V407V 0.04 TCGA-EE-A2GI-06 1 12183377 12183377 C T TNFRSF8 Missense_Mutation p.P328L 0.47 deleterious(0.03) possibly_damaging(0.662) TCGA-EE-A2GI-06 1 12374283 12374283 G A VPS13D Silent p.Q2349Q 0.75 TCGA-EE-A2GI-06 1 12856118 12856118 G A PRAMEF1 Silent p.E466E 0.24 TCGA-EE-A2GI-06 1 1322837 1322837 G A CCNL2 Missense_Mutation p.S446F 0.40 tolerated_low_confidence(0.39) benign(0.046) TCGA-EE-A2GI-06 1 142713255 142713255 C T RP11-417J8.6 RNA 0.25 TCGA-EE-A2GI-06 1 147091084 147091084 C T BCL9 Missense_Mutation p.P375S 0.30 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2GI-06 1 147092780 147092780 C T BCL9 Missense_Mutation p.P940L 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GI-06 1 147120214 147120214 C T ACP6 Splice_Site p.X326_splice 0.33 TCGA-EE-A2GI-06 1 147230570 147230570 C T GJA5 Silent p.Q259Q 0.38 TCGA-EE-A2GI-06 1 150325483 150325483 C T PRPF3 3'UTR 0.37 TCGA-EE-A2GI-06 1 150526356 150526356 A T ADAMTSL4 Nonsense_Mutation p.R297* 0.33 TCGA-EE-A2GI-06 1 151400343 151400343 G A POGZ Missense_Mutation p.A345V 0.29 tolerated(0.31) benign(0.001) TCGA-EE-A2GI-06 1 151826043 151826043 G A THEM5 5'UTR 0.33 TCGA-EE-A2GI-06 1 152058033 152058033 C T TCHHL1 Missense_Mutation p.E709K 0.22 tolerated(0.07) benign(0.081) TCGA-EE-A2GI-06 1 152082159 152082159 C T TCHH Silent p.Q1178Q 0.44 TCGA-EE-A2GI-06 1 152286781 152286781 C T FLG Missense_Mutation p.G194E 0.30 benign(0.13) TCGA-EE-A2GI-06 1 152733109 152733109 C T KPRP Missense_Mutation p.P349S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 1 153065978 153065978 C T SPRR2E 3'UTR 0.39 TCGA-EE-A2GI-06 1 153276335 153276335 T C PGLYRP3 Missense_Mutation p.K176R 0.29 tolerated(0.05) benign(0.248) TCGA-EE-A2GI-06 1 153751225 153751243 GGGCCAGAGCTGGCCCAGG - SLC27A3 Frame_Shift_Del p.P552Sfs*3 0.27 TCGA-EE-A2GI-06 1 153955637 153955637 G A RAB13 Intron 0.05 TCGA-EE-A2GI-06 1 153995689 153995689 C T NUP210L Missense_Mutation p.G1403S 0.24 deleterious(0.01) benign(0.103) TCGA-EE-A2GI-06 1 154209586 154209586 G A UBAP2L Missense_Mutation p.G226D 0.20 deleterious(0.01) unknown(0) TCGA-EE-A2GI-06 1 155935516 155935516 G A ARHGEF2 Missense_Mutation p.P126S 0.41 tolerated(0.06) benign(0.406) TCGA-EE-A2GI-06 1 156453092 156453092 G A MEF2D 5'UTR 0.26 TCGA-EE-A2GI-06 1 156498311 156498311 G A IQGAP3 Missense_Mutation p.P1555S 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GI-06 1 156841478 156841478 A G NTRK1 Missense_Mutation p.K261E 0.53 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A2GI-06 1 156844394 156844394 G A NTRK1 Silent p.E409E 0.50 TCGA-EE-A2GI-06 1 157062397 157062397 G A ETV3L 3'UTR 0.20 TCGA-EE-A2GI-06 1 158152832 158152832 G A CD1D Missense_Mutation p.D258N 0.22 deleterious(0.02) possibly_damaging(0.73) TCGA-EE-A2GI-06 1 158326480 158326480 C T CD1E Intron 0.53 TCGA-EE-A2GI-06 1 158368827 158368827 C T OR10T2 Missense_Mutation p.E144K 0.49 tolerated(0.21) benign(0.001) TCGA-EE-A2GI-06 1 158368941 158368941 G A OR10T2 Missense_Mutation p.L106F 0.58 tolerated(0.09) possibly_damaging(0.701) TCGA-EE-A2GI-06 1 158435677 158435677 C T OR10K1 Missense_Mutation p.S109F 0.20 tolerated(0.06) benign(0.003) TCGA-EE-A2GI-06 1 158449871 158449871 C T OR10R2 Silent p.V68V 0.47 TCGA-EE-A2GI-06 1 158450082 158450082 G A OR10R2 Missense_Mutation p.G139S 0.20 tolerated(0.05) probably_damaging(0.948) TCGA-EE-A2GI-06 1 158576825 158576825 C T OR10Z1 Silent p.I199I 0.56 TCGA-EE-A2GI-06 1 158631086 158631086 C T SPTA1 Missense_Mutation p.V860I 0.42 tolerated(0.39) benign(0.057) TCGA-EE-A2GI-06 1 158735659 158735659 G A OR6N1 Nonsense_Mutation p.Q272* 0.15 TCGA-EE-A2GI-06 1 158736456 158736456 C T OR6N1 Nonsense_Mutation p.W6* 0.29 TCGA-EE-A2GI-06 1 158912086 158912086 T C PYHIN1 Missense_Mutation p.V300A 0.24 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2GI-06 1 159683763 159683763 C T CRP Missense_Mutation p.R76K 0.52 tolerated(0.96) benign(0) TCGA-EE-A2GI-06 1 159796684 159796684 G A SLAMF8 5'UTR 0.24 TCGA-EE-A2GI-06 1 159799816 159799816 C T SLAMF8 Silent p.S67S 0.16 TCGA-EE-A2GI-06 1 159827966 159827966 T C VSIG8 Missense_Mutation p.N115S 0.54 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A2GI-06 1 159897575 159897575 G A IGSF9 Silent p.L1111L 0.25 TCGA-EE-A2GI-06 1 160720162 160720162 C T SLAMF7 Missense_Mutation p.L240F 0.16 tolerated(0.22) benign(0.02) TCGA-EE-A2GI-06 1 16101277 16101277 G A FBLIM1 Silent p.L292L 0.49 TCGA-EE-A2GI-06 1 161140245 161140245 G A PPOX Missense_Mutation p.G345E 0.18 tolerated(0.05) probably_damaging(0.98) TCGA-EE-A2GI-06 1 161203020 161203020 G T NR1I3 Missense_Mutation p.T116K 0.16 tolerated(0.76) benign(0.015) TCGA-EE-A2GI-06 1 162824779 162824779 T C C1orf110 Missense_Mutation p.K229E 0.59 deleterious(0.04) benign(0) TCGA-EE-A2GI-06 1 1635549 1635549 G A CDK11A Missense_Mutation p.P575S 0.47 deleterious(0) unknown(0) TCGA-EE-A2GI-06 1 167064132 167064132 G A DUSP27 Missense_Mutation p.E16K 0.47 deleterious(0.03) benign(0.417) TCGA-EE-A2GI-06 1 169761910 169761910 G A METTL18 Silent p.F309F 0.46 TCGA-EE-A2GI-06 1 17029371 17029371 G A ESPNP RNA 0.75 TCGA-EE-A2GI-06 1 171254618 171254618 G A FMO1 Missense_Mutation p.E512K 0.27 tolerated(0.31) benign(0.197) TCGA-EE-A2GI-06 1 171956893 171956893 G A DNM3 Missense_Mutation p.M111I 0.53 tolerated(0.07) benign(0.005) TCGA-EE-A2GI-06 1 172501763 172501763 G A SUCO 5'Flank 0.40 TCGA-EE-A2GI-06 1 173503730 173503730 G A SLC9C2 Missense_Mutation p.P623S 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 1 173526623 173526623 G A SLC9C2 Silent p.S357S 0.57 TCGA-EE-A2GI-06 1 17395573 17395573 G A PADI2 Missense_Mutation p.P655L 0.08 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GI-06 1 17405658 17405658 C T PADI2 Intron 0.75 TCGA-EE-A2GI-06 1 175053062 175053062 G A TNN Missense_Mutation p.D409N 0.21 tolerated(0.3) possibly_damaging(0.678) TCGA-EE-A2GI-06 1 175096176 175096176 C T TNN Silent p.I1000I 0.46 TCGA-EE-A2GI-06 1 175323626 175323626 G A TNR Nonsense_Mutation p.R1095* 0.52 TCGA-EE-A2GI-06 1 175332919 175332919 C T TNR Missense_Mutation p.D878N 0.22 tolerated(0.52) benign(0.038) TCGA-EE-A2GI-06 1 175362950 175362950 G A TNR Missense_Mutation p.S441F 0.22 deleterious(0.05) possibly_damaging(0.654) TCGA-EE-A2GI-06 1 175372522 175372522 G A TNR Missense_Mutation p.L244F 0.62 tolerated(0.47) probably_damaging(0.961) TCGA-EE-A2GI-06 1 176525628 176525628 G A PAPPA2 Missense_Mutation p.R57Q 0.60 tolerated_low_confidence(0.32) benign(0.007) TCGA-EE-A2GI-06 1 177250269 177250269 C T BRINP2 Silent p.L653L 0.21 TCGA-EE-A2GI-06 1 178420757 178420757 C T RASAL2 Missense_Mutation p.P560L 0.52 deleterious(0.02) possibly_damaging(0.789) TCGA-EE-A2GI-06 1 178442335 178442335 C T RASAL2 Silent p.S1268S 0.58 TCGA-EE-A2GI-06 1 178490338 178490338 C T TEX35 Intron 0.18 TCGA-EE-A2GI-06 1 179604942 179604942 C T TDRD5 Silent p.I480I 0.15 TCGA-EE-A2GI-06 1 180063583 180063583 C T CEP350 Silent p.I2781I 0.57 TCGA-EE-A2GI-06 1 180241035 180241035 G C LHX4 Missense_Mutation p.W224C 0.13 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GI-06 1 181689432 181689432 C T CACNA1E Silent p.I614I 0.12 TCGA-EE-A2GI-06 1 182555534 182555534 A G RNASEL Silent p.G136G 0.43 TCGA-EE-A2GI-06 1 182571242 182571242 G A RGS16 Silent p.F82F 0.58 TCGA-EE-A2GI-06 1 183506317 183506317 C T SMG7 Missense_Mutation p.H401Y 0.19 tolerated(0.1) benign(0.362) TCGA-EE-A2GI-06 1 184663275 184663275 G A EDEM3 Silent p.V907V 0.55 TCGA-EE-A2GI-06 1 18809590 18809590 C T KLHDC7A Silent p.C705C 0.49 TCGA-EE-A2GI-06 1 190067807 190067807 G A BRINP3 Missense_Mutation p.H548Y 0.56 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GI-06 1 196438197 196438197 C T KCNT2 Missense_Mutation p.G129E 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 1 196800955 196800955 G A CFHR1 Missense_Mutation p.M273I 0.50 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A2GI-06 1 197390751 197390751 C T CRB1 Missense_Mutation p.P598L 0.18 tolerated(0.2) probably_damaging(0.939) TCGA-EE-A2GI-06 1 198685930 198685930 G A PTPRC Missense_Mutation p.G471R 0.20 deleterious(0.02) benign(0.428) TCGA-EE-A2GI-06 1 200377283 200377283 G A ZNF281 Silent p.L517L 0.19 TCGA-EE-A2GI-06 1 200377285 200377285 G A ZNF281 Missense_Mutation p.L517F 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 1 200869303 200869303 G A C1orf106 Silent p.R84R 0.55 TCGA-EE-A2GI-06 1 201035026 201035026 G A CACNA1S Silent p.I931I 0.40 TCGA-EE-A2GI-06 1 201186546 201186546 G A IGFN1 Missense_Mutation p.G3243R 0.24 probably_damaging(1) TCGA-EE-A2GI-06 1 202128567 202128567 C T PTPN7 Silent p.L93L 0.57 TCGA-EE-A2GI-06 1 202287604 202287604 G A LGR6 Missense_Mutation p.G725S 0.59 tolerated(0.1) probably_damaging(0.967) TCGA-EE-A2GI-06 1 202719899 202719899 C T KDM5B Missense_Mutation p.R570Q 0.43 deleterious(0) probably_damaging(0.952) TCGA-EE-A2GI-06 1 202861593 202861593 G A KLHL12 3'UTR 0.51 TCGA-EE-A2GI-06 1 204218005 204218005 C T PLEKHA6 Missense_Mutation p.D590N 0.20 deleterious(0) benign(0.032) TCGA-EE-A2GI-06 1 20466686 20466686 C T PLA2G2F Silent p.F48F 0.53 TCGA-EE-A2GI-06 1 205760769 205760769 G A SLC41A1 Silent p.S478S 0.64 TCGA-EE-A2GI-06 1 206317533 206317533 G A CTSE 5'UTR 0.57 TCGA-EE-A2GI-06 1 206651542 206651542 C T IKBKE Silent p.I284I 0.50 TCGA-EE-A2GI-06 1 207643325 207643325 G A CR2 Missense_Mutation p.R368Q 0.56 tolerated(1) benign(0.002) TCGA-EE-A2GI-06 1 209605512 209605512 C T MIR205HG Intron 0.16 TCGA-EE-A2GI-06 1 21186888 21186888 C T EIF4G3 Silent p.K1028K 0.51 TCGA-EE-A2GI-06 1 212799628 212799628 G A FAM71A Missense_Mutation p.R470K 0.19 tolerated(0.12) benign(0.012) TCGA-EE-A2GI-06 1 212965114 212965114 G A NSL1 5'UTR 0.68 TCGA-EE-A2GI-06 1 214170240 214170240 C T PROX1 Missense_Mutation p.S121F 0.57 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A2GI-06 1 214576224 214576224 A G PTPN14 Splice_Site p.X194_splice 0.51 TCGA-EE-A2GI-06 1 22173852 22173852 G A HSPG2 Missense_Mutation p.P2720L 0.56 benign(0.272) TCGA-EE-A2GI-06 1 222712020 222712020 C T HHIPL2 Missense_Mutation p.G516D 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 1 223285675 223285675 A C TLR5 Silent p.V233V 0.54 TCGA-EE-A2GI-06 1 223408420 223408420 G A SUSD4 Intron 0.13 TCGA-EE-A2GI-06 1 228238512 228238512 G A WNT3A Missense_Mutation p.E157K 0.61 deleterious(0.01) possibly_damaging(0.884) TCGA-EE-A2GI-06 1 229772297 229772297 C T URB2 Missense_Mutation p.S646L 0.22 tolerated(0.53) benign(0.001) TCGA-EE-A2GI-06 1 230898473 230898473 C T CAPN9 Silent p.F159F 0.51 TCGA-EE-A2GI-06 1 233511738 233511738 G A MLK4 Silent p.R584R 0.17 TCGA-EE-A2GI-06 1 233515271 233515271 C T MLK4 Missense_Mutation p.P840L 0.23 deleterious(0.02) benign(0.004) TCGA-EE-A2GI-06 1 233802528 233802528 C T KCNK1 Silent p.I181I 0.60 TCGA-EE-A2GI-06 1 235324607 235324607 C T RBM34 5'UTR 0.15 TCGA-EE-A2GI-06 1 235506152 235506152 C T GGPS1 3'UTR 0.14 TCGA-EE-A2GI-06 1 241695763 241695763 C T KMO Nonsense_Mutation p.Q7* 0.22 TCGA-EE-A2GI-06 1 24383922 24383922 C T MYOM3 Missense_Mutation p.E1416K 0.42 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 1 244736006 244736006 C T C1orf101 Missense_Mutation p.P628S 0.51 tolerated(0.1) possibly_damaging(0.895) TCGA-EE-A2GI-06 1 247588508 247588508 G A NLRP3 Missense_Mutation p.R588K 0.61 tolerated(0.08) probably_damaging(0.992) TCGA-EE-A2GI-06 1 247599428 247599428 C T NLRP3 Silent p.N885N 0.14 TCGA-EE-A2GI-06 1 247614961 247614961 G A OR2B11 Silent p.F108F 0.54 TCGA-EE-A2GI-06 1 247835467 247835467 C T OR13G1 Missense_Mutation p.E293K 0.46 deleterious(0.02) benign(0.005) TCGA-EE-A2GI-06 1 248020614 248020614 C T TRIM58 Silent p.F22F 0.62 TCGA-EE-A2GI-06 1 248059194 248059194 C T OR2W3 Silent p.F102F 0.13 TCGA-EE-A2GI-06 1 248202403 248202403 C T OR2L2 Silent p.T278T 0.35 TCGA-EE-A2GI-06 1 248202499 248202499 G A OR2L2 Silent p.V310V 0.42 TCGA-EE-A2GI-06 1 248263568 248263568 G A OR2L13 Silent p.L297L 0.61 TCGA-EE-A2GI-06 1 248308997 248308997 C T OR2M5 Missense_Mutation p.S183F 0.14 deleterious(0.02) benign(0.013) TCGA-EE-A2GI-06 1 248512232 248512232 C T OR14C36 Silent p.S52S 0.20 TCGA-EE-A2GI-06 1 248789505 248789505 G A OR2T11 Nonsense_Mutation p.Q309* 0.21 TCGA-EE-A2GI-06 1 27684357 27684357 C T MAP3K6 Missense_Mutation p.E976K 0.36 tolerated(0.07) benign(0.002) TCGA-EE-A2GI-06 1 27876003 27876003 G A AHDC1 Missense_Mutation p.P875L 0.56 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GI-06 1 28148739 28148739 C T STX12 Intron 0.26 TCGA-EE-A2GI-06 1 28476528 28476528 G A PTAFR Silent p.I335I 0.30 TCGA-EE-A2GI-06 1 28607248 28607248 C T SESN2 Silent p.L460L 0.31 TCGA-EE-A2GI-06 1 31742085 31742085 G A SNRNP40 Missense_Mutation p.R260C 0.33 tolerated(0.07) probably_damaging(1) TCGA-EE-A2GI-06 1 32196529 32196529 G C BAI2 Missense_Mutation p.P1418A 0.23 tolerated(0.25) possibly_damaging(0.577) TCGA-EE-A2GI-06 1 32280743 32280743 G A SPOCD1 Silent p.A64A 0.24 TCGA-EE-A2GI-06 1 32632830 32632830 C T KPNA6 Missense_Mutation p.R393C 0.37 deleterious(0) benign(0.143) TCGA-EE-A2GI-06 1 33741748 33741748 C T ZNF362 Missense_Mutation p.P29L 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 1 33999476 33999476 T A CSMD2 Missense_Mutation p.K3160I 0.29 tolerated(0.11) benign(0.108) TCGA-EE-A2GI-06 1 34080165 34080165 G A CSMD2 Silent p.F1984F 0.31 TCGA-EE-A2GI-06 1 34123639 34123639 C T CSMD2 Missense_Mutation p.D1412N 0.31 tolerated(0.18) benign(0.151) TCGA-EE-A2GI-06 1 34123683 34123683 C A CSMD2 Missense_Mutation p.S1397I 0.40 tolerated(0.36) benign(0.034) TCGA-EE-A2GI-06 1 35477493 35477493 G A ZMYM6 Nonsense_Mutation p.Q354* 0.29 TCGA-EE-A2GI-06 1 35580267 35580267 G A ZMYM1 Missense_Mutation p.D946N 0.39 tolerated(0.14) possibly_damaging(0.632) TCGA-EE-A2GI-06 1 36020054 36020054 G A KIAA0319L Silent p.S13S 0.34 TCGA-EE-A2GI-06 1 36752234 36752234 C T THRAP3 Missense_Mutation p.P135S 0.34 tolerated(0.52) unknown(0) TCGA-EE-A2GI-06 1 36752235 36752235 C T THRAP3 Missense_Mutation p.P135L 0.34 tolerated(0.26) unknown(0) TCGA-EE-A2GI-06 1 38042068 38042068 C T GNL2 Silent p.K333K 0.30 TCGA-EE-A2GI-06 1 38227056 38227056 G A EPHA10 Intron 0.27 TCGA-EE-A2GI-06 1 39880101 39880101 A G MACF1 Intron 0.32 TCGA-EE-A2GI-06 1 39880123 39880123 G T MACF1 Intron 0.32 TCGA-EE-A2GI-06 1 39913438 39913438 C T MACF1 Silent p.F4553F 0.33 TCGA-EE-A2GI-06 1 40036968 40036968 G A PABPC4 Silent p.T147T 0.35 TCGA-EE-A2GI-06 1 40726592 40726592 C T ZMPSTE24 Missense_Mutation p.L69F 0.39 deleterious(0.02) possibly_damaging(0.634) TCGA-EE-A2GI-06 1 40881040 40881040 C T SMAP2 Missense_Mutation p.S223F 0.27 tolerated(0.13) possibly_damaging(0.548) TCGA-EE-A2GI-06 1 40980727 40980727 G A EXO5 Missense_Mutation p.E171K 0.34 tolerated(0.14) probably_damaging(0.983) TCGA-EE-A2GI-06 1 43228102 43228102 G A LEPRE1 Silent p.F170F 0.36 TCGA-EE-A2GI-06 1 43748429 43748429 G A C1orf210 3'UTR 0.34 TCGA-EE-A2GI-06 1 43748570 43748570 G A C1orf210 Silent p.G76G 0.28 TCGA-EE-A2GI-06 1 43825755 43825755 C T CDC20 Silent p.I181I 0.29 TCGA-EE-A2GI-06 1 43830265 43830265 G A ELOVL1 Silent p.F143F 0.19 TCGA-EE-A2GI-06 1 44064292 44064292 G A PTPRF Intron 0.55 TCGA-EE-A2GI-06 1 45288249 45288249 G A PTCH2 Silent p.P1150P 0.22 TCGA-EE-A2GI-06 1 45296630 45296630 G A PTCH2 Missense_Mutation p.R235W 0.49 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2GI-06 1 45347380 45347380 G A EIF2B3 Missense_Mutation p.P230S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 1 45392316 45392316 C T EIF2B3 Missense_Mutation p.G184R 0.35 tolerated(0.76) benign(0.001) TCGA-EE-A2GI-06 1 45813622 45813622 G A TESK2 Silent p.D197D 0.41 TCGA-EE-A2GI-06 1 46751383 46751383 G A LRRC41 Silent p.A382A 0.33 TCGA-EE-A2GI-06 1 46976841 46976841 G A DMBX1 Missense_Mutation p.D190N 0.36 deleterious(0) probably_damaging(0.944) TCGA-EE-A2GI-06 1 46977781 46977781 C T DMBX1 Missense_Mutation p.S250F 0.24 deleterious(0) probably_damaging(0.935) TCGA-EE-A2GI-06 1 48708153 48708153 C A SLC5A9 Silent p.R593R 0.34 TCGA-EE-A2GI-06 1 51048346 51048346 A T FAF1 Missense_Mutation p.F353I 0.38 deleterious(0) benign(0.096) TCGA-EE-A2GI-06 1 52991715 52991715 G T ZCCHC11 Missense_Mutation p.L80I 0.31 tolerated_low_confidence(1) benign(0.004) TCGA-EE-A2GI-06 1 53364886 53364886 G A ECHDC2 Missense_Mutation p.A238V 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 1 53556515 53556515 C T SLC1A7 Intron 0.30 TCGA-EE-A2GI-06 1 53558404 53558404 C T SLC1A7 Missense_Mutation p.D285N 0.33 tolerated(0.14) benign(0.201) TCGA-EE-A2GI-06 1 53927235 53927235 G A DMRTB1 Missense_Mutation p.G223S 0.35 tolerated(0.11) benign(0.346) TCGA-EE-A2GI-06 1 53975611 53975611 G A GLIS1 Missense_Mutation p.P483L 0.27 deleterious(0) benign(0.267) TCGA-EE-A2GI-06 1 55139713 55139713 G A MROH7 Missense_Mutation p.G609R 0.28 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GI-06 1 55563389 55563389 C T USP24 Missense_Mutation p.R1866K 0.33 deleterious(0.02) possibly_damaging(0.892) TCGA-EE-A2GI-06 1 57422471 57422471 C T C8B Missense_Mutation p.R121Q 0.35 tolerated(0.13) benign(0.022) TCGA-EE-A2GI-06 1 57480751 57480751 C T DAB1 Missense_Mutation p.D417N 0.27 tolerated(0.09) possibly_damaging(0.81) TCGA-EE-A2GI-06 1 6202331 6202331 C T CHD5 Missense_Mutation p.E765K 0.52 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 1 62739945 62739945 G A KANK4 Silent p.F277F 0.29 TCGA-EE-A2GI-06 1 62740018 62740018 G A KANK4 Missense_Mutation p.S253L 0.27 tolerated(0.28) benign(0.033) TCGA-EE-A2GI-06 1 64605949 64605949 G A ROR1 Silent p.E256E 0.26 TCGA-EE-A2GI-06 1 66102375 66102375 G A LEPR Missense_Mutation p.E1059K 0.35 tolerated(0.08) benign(0.065) TCGA-EE-A2GI-06 1 76877951 76877951 T A ST6GALNAC3 Missense_Mutation p.F158I 0.23 possibly_damaging(0.472) TCGA-EE-A2GI-06 1 7724050 7724050 G A CAMTA1 Missense_Mutation p.M481I 0.52 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A2GI-06 1 77509952 77509952 C T ST6GALNAC5 Missense_Mutation p.R109W 0.31 possibly_damaging(0.713) TCGA-EE-A2GI-06 1 77528847 77528847 G A ST6GALNAC5 Missense_Mutation p.E323K 0.49 benign(0.108) TCGA-EE-A2GI-06 1 82431863 82431863 G A LPHN2 Silent p.R696R 0.36 TCGA-EE-A2GI-06 1 84399432 84399432 G A TTLL7 Silent p.T302T 0.26 TCGA-EE-A2GI-06 1 85128012 85128012 G A SSX2IP Missense_Mutation p.R266C 0.38 tolerated(0.05) benign(0.117) TCGA-EE-A2GI-06 1 85331159 85331159 C T LPAR3 Silent p.R215R 0.29 TCGA-EE-A2GI-06 1 85331488 85331488 G A LPAR3 Nonsense_Mutation p.Q106* 0.35 TCGA-EE-A2GI-06 1 85392342 85392342 G A MCOLN2 3'UTR 0.30 TCGA-EE-A2GI-06 1 87025615 87025615 G A CLCA4 Missense_Mutation p.D54N 0.35 tolerated(0.34) benign(0.139) TCGA-EE-A2GI-06 1 9117614 9117614 C T SLC2A5 Missense_Mutation p.M62I 0.52 tolerated(0.54) benign(0.006) TCGA-EE-A2GI-06 1 92185583 92185583 G A TGFBR3 Missense_Mutation p.P427L 0.27 tolerated(0.11) benign(0.043) TCGA-EE-A2GI-06 1 93301759 93301760 TT G RPL5 Frame_Shift_Del p.F113Vfs*13 0.23 TCGA-EE-A2GI-06 1 94526256 94526256 G A ABCA4 Missense_Mutation p.S666F 0.23 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 1 94564365 94564365 G A ABCA4 Silent p.F251F 0.30 TCGA-EE-A2GI-06 1 94668085 94668085 G A ARHGAP29 Intron 0.22 TCGA-EE-A2GI-06 1 9714409 9714409 G A C1orf200 Missense_Mutation p.S29L 0.41 tolerated_low_confidence(0.43) benign(0) TCGA-EE-A2GI-06 1 98164935 98164935 C T DPYD Missense_Mutation p.E218K 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 20 10603430 10603430 T C SLX4IP Silent p.A210A 0.37 TCGA-EE-A2GI-06 20 13053030 13053030 G A SPTLC3 Missense_Mutation p.V144I 0.27 tolerated(0.18) benign(0.176) TCGA-EE-A2GI-06 20 13756650 13756650 G A ESF1 Missense_Mutation p.L302F 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GI-06 20 1424369 1424369 G A NSFL1C 3'UTR 0.36 TCGA-EE-A2GI-06 20 1600548 1600548 G A SIRPB1 Silent p.L15L 0.20 TCGA-EE-A2GI-06 20 17475601 17475601 C T BFSP1 Silent p.R372R 0.34 TCGA-EE-A2GI-06 20 209998 209998 G A DEFB129 Silent p.Q46Q 0.39 TCGA-EE-A2GI-06 20 23016549 23016549 C T SSTR4 Silent p.D143D 0.34 TCGA-EE-A2GI-06 20 23065195 23065195 C T CD93 Silent p.R545R 0.36 TCGA-EE-A2GI-06 20 23420879 23420879 G A CSTL1 5'UTR 0.25 TCGA-EE-A2GI-06 20 2384303 2384303 C T TGM6 Silent p.F390F 0.33 TCGA-EE-A2GI-06 20 24524132 24524132 C T SYNDIG1 Silent p.F133F 0.34 TCGA-EE-A2GI-06 20 30102327 30102327 G A HM13 5'UTR 0.47 TCGA-EE-A2GI-06 20 33516755 33516755 C T GSS Splice_Site p.X434_splice 0.40 TCGA-EE-A2GI-06 20 33879631 33879631 C T FAM83C Silent p.K159K 0.34 TCGA-EE-A2GI-06 20 34067172 34067172 G A CEP250 Silent p.E737E 0.35 TCGA-EE-A2GI-06 20 34214158 34214158 G A CPNE1 3'UTR 0.29 TCGA-EE-A2GI-06 20 3655221 3655221 C T ADAM33 Missense_Mutation p.G177E 0.35 deleterious(0) probably_damaging(0.911) TCGA-EE-A2GI-06 20 39986637 39986637 C A LPIN3 Missense_Mutation p.L719I 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 20 40081467 40081467 G A CHD6 Missense_Mutation p.P1079L 0.30 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GI-06 20 40730817 40730817 G A PTPRT Missense_Mutation p.L1221F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 20 41076894 41076894 G A PTPRT Missense_Mutation p.P509L 0.25 deleterious(0) possibly_damaging(0.604) TCGA-EE-A2GI-06 20 41306585 41306585 G A PTPRT Silent p.I358I 0.25 TCGA-EE-A2GI-06 20 42162677 42162677 G A L3MBTL1 Missense_Mutation p.E493K 0.31 deleterious(0.03) benign(0.32) TCGA-EE-A2GI-06 20 42682973 42682973 G A TOX2 Missense_Mutation p.G229E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 20 44167999 44167999 C T WFDC6 Silent p.L16L 0.29 TCGA-EE-A2GI-06 20 44589505 44589505 G A ZNF335 Missense_Mutation p.P555S 0.32 tolerated(0.29) benign(0.004) TCGA-EE-A2GI-06 20 44678403 44678403 C T SLC12A5 Missense_Mutation p.H742Y 0.40 tolerated(0.99) benign(0.003) TCGA-EE-A2GI-06 20 44684844 44684844 A G SLC12A5 Missense_Mutation p.N971S 0.42 tolerated(0.54) benign(0.002) TCGA-EE-A2GI-06 20 47897250 47897250 C T ZNFX1 5'Flank 0.33 TCGA-EE-A2GI-06 20 4839988 4839988 G T SLC23A2 Missense_Mutation p.T556N 0.41 deleterious(0) possibly_damaging(0.601) TCGA-EE-A2GI-06 20 51870614 51870614 G A TSHZ2 Missense_Mutation p.G206E 0.38 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GI-06 20 55027872 55027872 T C CASS4 Missense_Mutation p.L547P 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 20 56094315 56094315 C T CTCFL Silent p.L291L 0.33 TCGA-EE-A2GI-06 20 56227201 56227201 C T PMEPA1 Missense_Mutation p.G258R 0.67 deleterious_low_confidence(0.04) possibly_damaging(0.856) TCGA-EE-A2GI-06 20 60498741 60498741 G A CDH4 Missense_Mutation p.R536Q 0.33 tolerated(0.06) possibly_damaging(0.571) TCGA-EE-A2GI-06 20 61598861 61598861 C T SLC17A9 3'UTR 0.38 TCGA-EE-A2GI-06 20 61981641 61981641 G A CHRNA4 Silent p.S374S 0.52 TCGA-EE-A2GI-06 20 62173646 62173646 C T SRMS Silent p.K272K 0.40 TCGA-EE-A2GI-06 20 62839221 62839221 C T MYT1 Silent p.V224V 0.22 TCGA-EE-A2GI-06 20 7980462 7980462 G A TMX4 Silent p.F128F 0.24 TCGA-EE-A2GI-06 20 8862293 8862293 T G PLCB1 Missense_Mutation p.Y1150D 0.26 deleterious(0.04) possibly_damaging(0.599) TCGA-EE-A2GI-06 20 9510386 9510386 G A LAMP5 Silent p.A254A 0.37 TCGA-EE-A2GI-06 20 9561044 9561044 G A PAK7 Silent p.S246S 0.36 TCGA-EE-A2GI-06 20 9561046 9561046 A T PAK7 Missense_Mutation p.S246T 0.37 tolerated_low_confidence(0.58) benign(0.142) TCGA-EE-A2GI-06 21 11029651 11029651 C T BAGE2 RNA 0.14 TCGA-EE-A2GI-06 21 14983034 14983034 G A POTED Missense_Mutation p.R162K 0.58 tolerated(0.38) benign(0.074) TCGA-EE-A2GI-06 21 27945215 27945215 C T CYYR1 Silent p.P15P 0.24 TCGA-EE-A2GI-06 21 30329142 30329142 C T LTN1 Missense_Mutation p.M1053I 0.18 tolerated(0.31) benign(0.023) TCGA-EE-A2GI-06 21 30693685 30693685 G A BACH1 Silent p.R28R 0.29 TCGA-EE-A2GI-06 21 31964965 31964965 C T KRTAP6-3 Silent p.S60S 0.32 TCGA-EE-A2GI-06 21 34635543 34635543 C T IFNAR2 Missense_Mutation p.S429F 0.26 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GI-06 21 34994338 34994338 G A CRYZL1 Missense_Mutation p.P61S 0.25 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GI-06 21 35275880 35275880 C A ATP5O Missense_Mutation p.V198F 0.27 tolerated(0.07) possibly_damaging(0.507) TCGA-EE-A2GI-06 21 38132083 38132083 G A HLCS Silent p.I580I 0.28 TCGA-EE-A2GI-06 21 38525433 38525433 C T TTC3 Silent p.L866L 0.26 TCGA-EE-A2GI-06 21 40191655 40191655 C T ETS2 Missense_Mutation p.P347L 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GI-06 21 40571568 40571568 C T BRWD1 Missense_Mutation p.G1592R 0.31 deleterious(0.04) probably_damaging(1) TCGA-EE-A2GI-06 21 40665885 40665885 G A BRWD1 Missense_Mutation p.S228F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 21 41414351 41414351 G A DSCAM Missense_Mutation p.P1878L 0.38 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GI-06 21 41559876 41559876 G A DSCAM Silent p.S864S 0.22 TCGA-EE-A2GI-06 21 41711083 41711083 C T DSCAM Silent p.A490A 0.27 TCGA-EE-A2GI-06 21 42064779 42064779 G A DSCAM Silent p.I155I 0.33 TCGA-EE-A2GI-06 21 43533714 43533714 C T UMODL1 Silent p.S840S 0.31 TCGA-EE-A2GI-06 21 43702476 43702476 C T ABCG1 Silent p.I227I 0.22 TCGA-EE-A2GI-06 21 47359972 47359972 G A PCBP3 Missense_Mutation p.G313E 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 21 47359986 47359986 G A PCBP3 Missense_Mutation p.E318K 0.21 deleterious(0.02) possibly_damaging(0.859) TCGA-EE-A2GI-06 21 47423519 47423519 C T COL6A1 Silent p.F893F 0.33 TCGA-EE-A2GI-06 21 47695184 47695184 C T MCM3AP Silent p.L638L 0.26 TCGA-EE-A2GI-06 21 47711284 47711284 C T YBEY Missense_Mutation p.P83S 0.20 tolerated(0.51) benign(0.038) TCGA-EE-A2GI-06 22 19504097 19504097 C T CDC45 Silent p.P528P 0.52 TCGA-EE-A2GI-06 22 19865663 19865663 G A TXNRD2 Silent p.F465F 0.22 TCGA-EE-A2GI-06 22 20458068 20458068 G A RIMBP3 Silent p.F1078F 0.14 TCGA-EE-A2GI-06 22 20937674 20937674 C T MED15 Missense_Mutation p.S577L 0.20 deleterious(0) probably_damaging(0.938) TCGA-EE-A2GI-06 22 21096518 21096518 G A PI4KA Missense_Mutation p.P1247S 0.37 tolerated(0.75) benign(0.008) TCGA-EE-A2GI-06 22 21386021 21386021 G A SLC7A4 Silent p.S27S 0.38 TCGA-EE-A2GI-06 22 23438263 23438263 C T GNAZ Silent p.V127V 0.37 TCGA-EE-A2GI-06 22 23742356 23742356 G A ZDHHC8P1 RNA 0.43 TCGA-EE-A2GI-06 22 24563146 24563146 C T CABIN1 Silent p.L1849L 0.39 TCGA-EE-A2GI-06 22 24622626 24622626 C T GGT5 Silent p.G337G 0.33 TCGA-EE-A2GI-06 22 25255689 25255689 G A SGSM1 Missense_Mutation p.D270N 0.37 tolerated(0.06) probably_damaging(0.922) TCGA-EE-A2GI-06 22 25289463 25289463 C T SGSM1 Silent p.I667I 0.45 TCGA-EE-A2GI-06 22 26264314 26264314 G A MYO18B Missense_Mutation p.D1305N 0.35 deleterious(0.01) benign(0.422) TCGA-EE-A2GI-06 22 26829737 26829737 C T ASPHD2 Silent p.S52S 0.30 TCGA-EE-A2GI-06 22 26995370 26995370 G A CRYBB1 3'UTR 0.28 TCGA-EE-A2GI-06 22 30688370 30688370 G A TBC1D10A Silent p.Y514Y 0.31 TCGA-EE-A2GI-06 22 30688391 30688391 G A TBC1D10A Silent p.S507S 0.34 TCGA-EE-A2GI-06 22 30950957 30950957 C T GAL3ST1 Missense_Mutation p.D419N 0.33 tolerated(0.07) benign(0.082) TCGA-EE-A2GI-06 22 30950960 30950960 G A GAL3ST1 Missense_Mutation p.R418C 0.36 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GI-06 22 31740408 31740408 C T PATZ1 Missense_Mutation p.R394K 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GI-06 22 33670313 33670313 G A LARGE 3'UTR 0.30 TCGA-EE-A2GI-06 22 36960624 36960624 G A CACNG2 Missense_Mutation p.S249F 0.36 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A2GI-06 22 37159018 37159018 C T IFT27 Missense_Mutation p.R131Q 0.31 deleterious(0.02) benign(0.199) TCGA-EE-A2GI-06 22 37707063 37707063 C T CYTH4 Silent p.F281F 0.32 TCGA-EE-A2GI-06 22 38474292 38474292 C T SLC16A8 3'UTR 0.69 TCGA-EE-A2GI-06 22 38889753 38889753 C T DDX17 Missense_Mutation p.G450E 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 22 39064087 39064087 C T CBY1 Missense_Mutation p.P10S 0.25 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A2GI-06 22 39064088 39064088 C T CBY1 Missense_Mutation p.P10L 0.24 tolerated(0.15) possibly_damaging(0.851) TCGA-EE-A2GI-06 22 39966960 39966960 C T CACNA1I Missense_Mutation p.P68L 0.33 deleterious(0.02) benign(0.06) TCGA-EE-A2GI-06 22 41744140 41744140 C T ZC3H7B Silent p.L579L 0.30 TCGA-EE-A2GI-06 22 41864692 41864692 G A PHF5A 5'UTR 0.30 TCGA-EE-A2GI-06 22 41913586 41913586 C T ACO2 Silent p.F297F 0.33 TCGA-EE-A2GI-06 22 42988045 42988045 G A POLDIP3 Missense_Mutation p.H313Y 0.27 deleterious(0.04) possibly_damaging(0.485) TCGA-EE-A2GI-06 22 42988046 42988046 G A POLDIP3 Silent p.V312V 0.27 TCGA-EE-A2GI-06 22 43972186 43972186 G A EFCAB6 Silent p.F1137F 0.33 TCGA-EE-A2GI-06 22 45564056 45564056 A G NUP50 5'UTR 0.33 TCGA-EE-A2GI-06 22 46655266 46655266 A T PKDREJ Missense_Mutation p.N1318K 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 22 50500043 50500043 C T MLC1 Nonsense_Mutation p.W368* 0.26 TCGA-EE-A2GI-06 22 50724285 50724285 G A PLXNB2 Missense_Mutation p.P678S 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GI-06 22 50901026 50901026 G A SBF1 Missense_Mutation p.L697F 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 22 50927489 50927489 C T MIOX Silent p.T143T 0.52 TCGA-EE-A2GI-06 22 51020181 51020181 G A CHKB Silent p.I148I 0.30 TCGA-EE-A2GI-06 2 101093845 101093845 C T NMS Missense_Mutation p.T77I 0.46 deleterious(0) possibly_damaging(0.617) TCGA-EE-A2GI-06 2 102791180 102791180 C T IL1R1 Silent p.L375L 0.32 TCGA-EE-A2GI-06 2 103149004 103149004 C T SLC9A4 Missense_Mutation p.H752Y 0.42 tolerated(0.43) benign(0.001) TCGA-EE-A2GI-06 2 103310886 103310886 G A SLC9A2 Missense_Mutation p.R480Q 0.13 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A2GI-06 2 107459540 107459540 G A ST6GAL2 Silent p.V298V 0.37 TCGA-EE-A2GI-06 2 107459956 107459956 C T ST6GAL2 Missense_Mutation p.E160K 0.22 benign(0.002) TCGA-EE-A2GI-06 2 107460171 107460171 G A ST6GAL2 Missense_Mutation p.S88F 0.34 benign(0.332) TCGA-EE-A2GI-06 2 108488425 108488425 C T RGPD4 Missense_Mutation p.S1322F 0.21 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GI-06 2 109382422 109382422 A C RANBP2 Silent p.P1809P 0.47 TCGA-EE-A2GI-06 2 109382703 109382703 C T RANBP2 Missense_Mutation p.S1903L 0.45 deleterious(0.01) benign(0.006) TCGA-EE-A2GI-06 2 110321941 110321941 A T SEPT10 Splice_Site p.X343_splice 0.30 TCGA-EE-A2GI-06 2 110962585 110962585 G A NPHP1 5'UTR 0.22 TCGA-EE-A2GI-06 2 111551682 111551682 G A ACOXL Missense_Mutation p.M92I 0.18 deleterious(0.03) benign(0.428) TCGA-EE-A2GI-06 2 112614391 112614391 C T ANAPC1 Silent p.K477K 0.11 TCGA-EE-A2GI-06 2 112621464 112621464 A T ANAPC1 Missense_Mutation p.N280K 0.56 tolerated(0.33) benign(0.005) TCGA-EE-A2GI-06 2 113514565 113514565 G A CKAP2L Missense_Mutation p.S128L 0.45 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A2GI-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.49 tolerated(0.39) benign(0.015) TCGA-EE-A2GI-06 2 113785660 113785660 C T IL36B Intron 0.51 TCGA-EE-A2GI-06 2 113993096 113993096 G A PAX8 Missense_Mutation p.P321L 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2GI-06 2 122285422 122285422 G A CLASP1 Silent p.F141F 0.32 TCGA-EE-A2GI-06 2 125261885 125261885 C T CNTNAP5 Missense_Mutation p.S359F 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A2GI-06 2 128324317 128324317 G A MYO7B Missense_Mutation p.E129K 0.48 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GI-06 2 130897227 130897227 G A CCDC74B Silent p.I348I 0.31 TCGA-EE-A2GI-06 2 131976027 131976027 T G POTEE Missense_Mutation p.F18V 0.40 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A2GI-06 2 135470807 135470807 G A TMEM163 Silent p.S95S 0.35 TCGA-EE-A2GI-06 2 136567271 136567271 G A LCT Silent p.V882V 0.43 TCGA-EE-A2GI-06 2 137917934 137917934 A T THSD7B Missense_Mutation p.K507N 0.27 deleterious(0.04) possibly_damaging(0.607) TCGA-EE-A2GI-06 2 138033596 138033596 G A THSD7B Missense_Mutation p.A834T 0.50 deleterious(0.01) benign(0.266) TCGA-EE-A2GI-06 2 138421075 138421075 G A THSD7B Silent p.G1530G 0.31 TCGA-EE-A2GI-06 2 144764978 144764978 T G GTDC1 Missense_Mutation p.K216Q 0.19 tolerated_low_confidence(0.19) benign(0.014) TCGA-EE-A2GI-06 2 152222712 152222712 C T TNFAIP6 Silent p.A125A 0.14 TCGA-EE-A2GI-06 2 152388399 152388399 C T NEB Silent p.R7143R 0.16 TCGA-EE-A2GI-06 2 152527573 152527573 C T NEB Missense_Mutation p.M1490I 0.17 possibly_damaging(0.609) TCGA-EE-A2GI-06 2 154996921 154996921 G A GALNT13 Missense_Mutation p.E72K 0.25 tolerated(0.71) benign(0.002) TCGA-EE-A2GI-06 2 158300411 158300411 C T CYTIP Missense_Mutation p.R41K 0.40 tolerated(0.17) probably_damaging(0.985) TCGA-EE-A2GI-06 2 158443818 158443818 G A ACVR1C Missense_Mutation p.S62F 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GI-06 2 160032913 160032913 G A TANC1 Missense_Mutation p.E596K 0.26 deleterious(0.03) possibly_damaging(0.766) TCGA-EE-A2GI-06 2 161052042 161052042 G A ITGB6 Missense_Mutation p.S144F 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 2 163236489 163236489 G A KCNH7 Missense_Mutation p.P1002L 0.44 tolerated(0.31) benign(0) TCGA-EE-A2GI-06 2 168097217 168097217 C T XIRP2 Missense_Mutation p.S338F 0.40 probably_damaging(0.99) TCGA-EE-A2GI-06 2 168099701 168099701 C T XIRP2 Missense_Mutation p.S600F 0.19 benign(0.015) TCGA-EE-A2GI-06 2 168103439 168103440 - T XIRP2 Frame_Shift_Ins p.S1847Ffs*21 0.21 TCGA-EE-A2GI-06 2 170068590 170068590 C T LRP2 Silent p.R2056R 0.11 TCGA-EE-A2GI-06 2 172952900 172952900 G A DLX1 Missense_Mutation p.G228E 0.30 tolerated(0.47) possibly_damaging(0.837) TCGA-EE-A2GI-06 2 175260421 175260421 G A CIR1 5'UTR 0.51 TCGA-EE-A2GI-06 2 17697618 17697618 G A RAD51AP2 Missense_Mutation p.P689S 0.40 tolerated(0.23) benign(0.116) TCGA-EE-A2GI-06 2 17773477 17773477 G A VSNL1 Missense_Mutation p.E46K 0.40 tolerated(0.12) benign(0.013) TCGA-EE-A2GI-06 2 178494141 178494141 C T PDE11A Silent p.R932R 0.38 TCGA-EE-A2GI-06 2 178592807 178592807 G A PDE11A Missense_Mutation p.L628F 0.54 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GI-06 2 179397187 179397187 C T TTN Missense_Mutation p.V34719M 0.15 TCGA-EE-A2GI-06 2 179422211 179422211 C T TTN Missense_Mutation p.E29260K 0.27 TCGA-EE-A2GI-06 2 179440898 179440898 C T TTN Missense_Mutation p.D23321N 0.14 TCGA-EE-A2GI-06 2 179444698 179444698 G A TTN Missense_Mutation p.P22439L 0.25 TCGA-EE-A2GI-06 2 179468902 179468902 C T TTN Missense_Mutation p.G18171E 0.38 TCGA-EE-A2GI-06 2 179473426 179473426 C T TTN Missense_Mutation p.G17438R 0.56 TCGA-EE-A2GI-06 2 179480180 179480180 C T TTN Nonsense_Mutation p.W16164* 0.13 TCGA-EE-A2GI-06 2 179542540 179542540 C T TTN Missense_Mutation p.E11367K 0.47 TCGA-EE-A2GI-06 2 179568946 179568946 G A TTN Nonsense_Mutation p.R10051* 0.17 TCGA-EE-A2GI-06 2 179577159 179577159 C T TTN Missense_Mutation p.E9164K 0.28 TCGA-EE-A2GI-06 2 179579103 179579103 C T TTN Missense_Mutation p.E8800K 0.14 TCGA-EE-A2GI-06 2 179582835 179582835 C T TTN Missense_Mutation p.E8300K 0.49 TCGA-EE-A2GI-06 2 179585898 179585898 A G TTN Silent p.A7616A 0.27 TCGA-EE-A2GI-06 2 179599464 179599464 C T TTN Missense_Mutation p.D5063N 0.30 TCGA-EE-A2GI-06 2 179602934 179602934 C T TTN Missense_Mutation p.R4749Q 0.33 TCGA-EE-A2GI-06 2 179605638 179605638 G A TTN Missense_Mutation p.P4108S 0.26 TCGA-EE-A2GI-06 2 179640917 179640917 C T TTN Missense_Mutation p.D1892N 0.36 TCGA-EE-A2GI-06 2 188225386 188225386 G A CALCRL Silent p.L240L 0.25 TCGA-EE-A2GI-06 2 189861133 189861133 G A COL3A1 Missense_Mutation p.G558R 0.37 unknown(0) TCGA-EE-A2GI-06 2 190334817 190334817 C T WDR75 Missense_Mutation p.P612L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 2 190922147 190922147 G A MSTN Missense_Mutation p.P322L 0.56 deleterious(0) possibly_damaging(0.61) TCGA-EE-A2GI-06 2 191905794 191905794 C T STAT4 Silent p.L444L 0.31 TCGA-EE-A2GI-06 2 1926121 1926121 G A MYT1L Missense_Mutation p.P474S 0.49 tolerated(0.7) benign(0.004) TCGA-EE-A2GI-06 2 192821082 192821082 T A TMEFF2 Missense_Mutation p.E256D 0.20 tolerated(0.87) benign(0.115) TCGA-EE-A2GI-06 2 196746715 196746715 C T DNAH7 Missense_Mutation p.G1922E 0.38 deleterious(0.03) possibly_damaging(0.847) TCGA-EE-A2GI-06 2 197297976 197297976 G A HECW2 Missense_Mutation p.R58C 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 2 201473824 201473824 G A AOX1 Missense_Mutation p.G342E 0.47 tolerated(0.1) benign(0.003) TCGA-EE-A2GI-06 2 202074097 202074097 C T CASP10 Silent p.S409S 0.24 TCGA-EE-A2GI-06 2 204045169 204045169 C T NBEAL1 Missense_Mutation p.P2148S 0.36 tolerated(0.07) possibly_damaging(0.582) TCGA-EE-A2GI-06 2 204820508 204820508 G A ICOS Missense_Mutation p.G70R 0.35 tolerated(0.13) possibly_damaging(0.613) TCGA-EE-A2GI-06 2 205986523 205986523 C T PARD3B Missense_Mutation p.P339S 0.47 tolerated(0.2) benign(0.016) TCGA-EE-A2GI-06 2 205989120 205989130 TAAAAAACATT - PARD3B Frame_Shift_Del p.K413Tfs*70 0.16 TCGA-EE-A2GI-06 2 206364732 206364732 C T PARD3B Missense_Mutation p.P991S 0.18 tolerated(0.51) possibly_damaging(0.506) TCGA-EE-A2GI-06 2 207172439 207172439 G A ZDBF2 Missense_Mutation p.E1063K 0.52 tolerated(0.16) possibly_damaging(0.678) TCGA-EE-A2GI-06 2 208795654 208795654 G T PLEKHM3 Missense_Mutation p.R628S 0.57 deleterious(0) possibly_damaging(0.855) TCGA-EE-A2GI-06 2 209010568 209010568 C T CRYGB Missense_Mutation p.G61E 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 2 209358047 209358047 G A PTH2R Missense_Mutation p.R439K 0.31 tolerated(0.07) benign(0.003) TCGA-EE-A2GI-06 2 212251679 212251679 C T ERBB4 Missense_Mutation p.R1127K 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GI-06 2 21225679 21225679 C T APOB Silent p.P4205P 0.50 TCGA-EE-A2GI-06 2 21231904 21231904 G A APOB Silent p.F2612F 0.19 TCGA-EE-A2GI-06 2 21236095 21236095 G A APOB Missense_Mutation p.L1385F 0.16 probably_damaging(0.997) TCGA-EE-A2GI-06 2 215815627 215815627 G C ABCA12 Missense_Mutation p.I2276M 0.37 tolerated(0.07) possibly_damaging(0.78) TCGA-EE-A2GI-06 2 215866380 215866380 G A ABCA12 Missense_Mutation p.S922F 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GI-06 2 216264013 216264013 G A FN1 Silent p.I1105I 0.16 TCGA-EE-A2GI-06 2 219888010 219888010 G A CCDC108 Silent p.F913F 0.50 TCGA-EE-A2GI-06 2 220046990 220046990 G A FAM134A Missense_Mutation p.C424Y 0.28 deleterious(0.04) benign(0.072) TCGA-EE-A2GI-06 2 220420890 220420890 C T OBSL1 Silent p.G1487G 0.46 TCGA-EE-A2GI-06 2 226446890 226446890 C T NYAP2 Missense_Mutation p.L253F 0.18 tolerated(0.08) benign(0.158) TCGA-EE-A2GI-06 2 227924234 227924234 C T COL4A4 Missense_Mutation p.G757E 0.39 probably_damaging(0.972) TCGA-EE-A2GI-06 2 228846340 228846340 G A SPHKAP 3'UTR 0.50 TCGA-EE-A2GI-06 2 228846549 228846549 G A SPHKAP Missense_Mutation p.R1663W 0.49 deleterious(0) possibly_damaging(0.67) TCGA-EE-A2GI-06 2 228882851 228882851 C T SPHKAP Missense_Mutation p.D907N 0.17 tolerated(0.32) benign(0.126) TCGA-EE-A2GI-06 2 228883626 228883626 C T SPHKAP Missense_Mutation p.M648I 0.21 tolerated(1) benign(0) TCGA-EE-A2GI-06 2 230377581 230377581 C T DNER Silent p.R355R 0.49 TCGA-EE-A2GI-06 2 230875580 230875580 C T FBXO36 Silent p.L183L 0.21 TCGA-EE-A2GI-06 2 233346296 233346296 C T ECEL1 Missense_Mutation p.E637K 0.18 tolerated(0.1) benign(0.045) TCGA-EE-A2GI-06 2 233394806 233394806 C T CHRND Silent p.L259L 0.20 TCGA-EE-A2GI-06 2 234237135 234237135 G A SAG Missense_Mutation p.R175Q 0.22 tolerated(0.05) possibly_damaging(0.747) TCGA-EE-A2GI-06 2 234678194 234678194 G A UGT1A10 Intron 0.20 TCGA-EE-A2GI-06 2 234774899 234774899 T C MSL3P1 RNA 0.19 TCGA-EE-A2GI-06 2 234774900 234774900 C T MSL3P1 RNA 0.20 TCGA-EE-A2GI-06 2 238263553 238263553 G A COL6A3 Missense_Mutation p.P2206S 0.18 benign(0) TCGA-EE-A2GI-06 2 238671681 238671681 C T LRRFIP1 Missense_Mutation p.P442L 0.19 deleterious(0) benign(0.035) TCGA-EE-A2GI-06 2 239161848 239161848 G A PER2 Missense_Mutation p.S939F 0.22 tolerated(0.14) possibly_damaging(0.467) TCGA-EE-A2GI-06 2 241516377 241516377 C T RNPEPL1 Silent p.L387L 0.20 TCGA-EE-A2GI-06 2 24929502 24929502 C T NCOA1 Missense_Mutation p.P388L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 2 26455137 26455137 G A HADHA Missense_Mutation p.S155L 0.49 deleterious(0) benign(0.297) TCGA-EE-A2GI-06 2 26501657 26501657 C T HADHB Silent p.F206F 0.53 TCGA-EE-A2GI-06 2 26696884 26696884 G A OTOF Missense_Mutation p.P1128L 0.46 deleterious(0) possibly_damaging(0.883) TCGA-EE-A2GI-06 2 27322202 27322202 G A CGREF1 3'Flank 0.17 TCGA-EE-A2GI-06 2 27457094 27457094 G A CAD Silent p.K1206K 0.18 TCGA-EE-A2GI-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.29 TCGA-EE-A2GI-06 2 30966434 30966434 C T CAPN13 Silent p.E420E 0.49 TCGA-EE-A2GI-06 2 32958980 32958980 G A TTC27 Nonsense_Mutation p.W440* 0.17 TCGA-EE-A2GI-06 2 33172839 33172839 G A LTBP1 Missense_Mutation p.G150S 0.53 tolerated(0.79) benign(0.003) TCGA-EE-A2GI-06 2 33572504 33572504 C T LTBP1 Silent p.F1309F 0.36 TCGA-EE-A2GI-06 2 33623595 33623595 G A LTBP1 Missense_Mutation p.D1717N 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-EE-A2GI-06 2 33759402 33759402 C T RASGRP3 Missense_Mutation p.L366F 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2GI-06 2 3726125 3726125 C T ALLC Missense_Mutation p.T51I 0.40 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GI-06 2 37458795 37458795 G A CEBPZ 5'UTR 0.19 TCGA-EE-A2GI-06 2 38972165 38972165 T C SRSF7 3'UTR 0.50 TCGA-EE-A2GI-06 2 39224440 39224440 T A SOS1 Missense_Mutation p.Q973L 0.19 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A2GI-06 2 43793741 43793741 G A THADA Intron 0.16 TCGA-EE-A2GI-06 2 43939477 43939477 C T PLEKHH2 Silent p.S805S 0.18 TCGA-EE-A2GI-06 2 46017 46017 C T FAM110C Silent p.V123V 0.45 TCGA-EE-A2GI-06 2 46611732 46611732 C T EPAS1 Missense_Mutation p.P849L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 2 48936151 48936151 C T LHCGR Missense_Mutation p.E206K 0.17 tolerated(0.47) benign(0.044) TCGA-EE-A2GI-06 2 49190880 49190880 C T FSHR Missense_Mutation p.M360I 0.19 deleterious(0.03) possibly_damaging(0.729) TCGA-EE-A2GI-06 2 56420443 56420443 C T CCDC85A Missense_Mutation p.P370S 0.43 deleterious_low_confidence(0) benign(0.437) TCGA-EE-A2GI-06 2 56420444 56420444 C T CCDC85A Missense_Mutation p.P370L 0.43 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-EE-A2GI-06 2 60688871 60688871 C T BCL11A Silent p.L392L 0.42 TCGA-EE-A2GI-06 2 61331052 61331052 C T KIAA1841 Missense_Mutation p.S477F 0.24 deleterious_low_confidence(0.03) benign(0.084) TCGA-EE-A2GI-06 2 61415732 61415732 T C USP34 Silent p.P3382P 0.43 TCGA-EE-A2GI-06 2 64819118 64819118 C T AFTPH Silent p.F920F 0.38 TCGA-EE-A2GI-06 2 69098402 69098402 G A BMP10 Missense_Mutation p.S30F 0.11 tolerated(0.15) probably_damaging(0.909) TCGA-EE-A2GI-06 2 70143266 70143266 T A MXD1 Silent p.G29G 0.33 TCGA-EE-A2GI-06 2 70143267 70143267 T C MXD1 Missense_Mutation p.Y30H 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 2 70906010 70906010 C T ADD2 Silent p.T403T 0.26 TCGA-EE-A2GI-06 2 71060970 71060970 C T CD207 Silent p.L124L 0.57 TCGA-EE-A2GI-06 2 73449921 73449921 C T SMYD5 Silent p.A227A 0.13 TCGA-EE-A2GI-06 2 74362661 74362661 G A BOLA3 3'UTR 0.26 TCGA-EE-A2GI-06 2 74598765 74598765 C T DCTN1 Missense_Mutation p.E182K 0.57 tolerated(0.27) benign(0.018) TCGA-EE-A2GI-06 2 76975907 76975907 G A LRRTM4 Silent p.L563L 0.16 TCGA-EE-A2GI-06 2 80085165 80085165 G A CTNNA2 Missense_Mutation p.E109K 0.38 tolerated(0.05) benign(0.272) TCGA-EE-A2GI-06 2 80835431 80835431 C T CTNNA2 Silent p.L806L 0.46 TCGA-EE-A2GI-06 2 84518229 84518229 G A FUNDC2P2 RNA 0.45 TCGA-EE-A2GI-06 2 89442280 89442280 G A IGKV3-20 Missense_Mutation p.S42F 0.13 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GI-06 2 90108565 90108565 C T IGKV6D-41 Silent p.L12L 0.20 TCGA-EE-A2GI-06 2 96919674 96919674 G A TMEM127 Missense_Mutation p.R197C 0.23 deleterious(0) possibly_damaging(0.725) TCGA-EE-A2GI-06 2 97526338 97526338 C T SEMA4C 3'UTR 0.39 TCGA-EE-A2GI-06 2 97526999 97526999 G A SEMA4C Silent p.A622A 0.56 TCGA-EE-A2GI-06 2 97530576 97530576 G A SEMA4C Silent p.T276T 0.40 TCGA-EE-A2GI-06 2 99685455 99685455 A G TSGA10 Missense_Mutation p.S372P 0.17 tolerated(0.2) benign(0.195) TCGA-EE-A2GI-06 3 100964655 100964655 C T IMPG2 Missense_Mutation p.V512I 0.33 deleterious(0.03) benign(0.013) TCGA-EE-A2GI-06 3 102183090 102183090 C T ZPLD1 Silent p.F268F 0.30 TCGA-EE-A2GI-06 3 102189276 102189276 G A ZPLD1 Silent p.R340R 0.23 TCGA-EE-A2GI-06 3 10261447 10261447 G A IRAK2 Silent p.L329L 0.38 TCGA-EE-A2GI-06 3 10430058 10430058 C T ATP2B2 Silent p.R270R 0.30 TCGA-EE-A2GI-06 3 108212016 108212016 G A MYH15 Silent p.F260F 0.34 TCGA-EE-A2GI-06 3 108818307 108818307 G A MORC1 Silent p.S107S 0.28 TCGA-EE-A2GI-06 3 108818308 108818308 G A MORC1 Missense_Mutation p.S107F 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GI-06 3 10970918 10970918 G A SLC6A11 Missense_Mutation p.V422M 0.34 tolerated(0.09) probably_damaging(0.921) TCGA-EE-A2GI-06 3 111632584 111632584 G A PHLDB2 Intron 0.42 TCGA-EE-A2GI-06 3 111927047 111927047 T A SLC9C1 Missense_Mutation p.Y655F 0.30 deleterious(0.01) possibly_damaging(0.68) TCGA-EE-A2GI-06 3 112064089 112064089 C T CD200 Silent p.T150T 0.33 TCGA-EE-A2GI-06 3 113513742 113513742 C T ATP6V1A Missense_Mutation p.R338C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 3 113724708 113724708 A G KIAA1407 Silent p.G505G 0.35 TCGA-EE-A2GI-06 3 11374466 11374466 T C ATG7 Missense_Mutation p.V263A 0.47 tolerated(0.16) benign(0.002) TCGA-EE-A2GI-06 3 119134375 119134375 T C ARHGAP31 Missense_Mutation p.V1200A 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 3 119379156 119379156 G A POPDC2 Silent p.L39L 0.25 TCGA-EE-A2GI-06 3 120347171 120347171 G A HGD 3'UTR 0.34 TCGA-EE-A2GI-06 3 121215716 121215716 C T POLQ Silent p.Q739Q 0.33 TCGA-EE-A2GI-06 3 121712217 121712217 C T ILDR1 Missense_Mutation p.G460E 0.40 tolerated(0.75) benign(0.004) TCGA-EE-A2GI-06 3 121825205 121825205 G A CD86 Silent p.Q187Q 0.37 TCGA-EE-A2GI-06 3 121828124 121828124 C T CD86 Missense_Mutation p.P239L 0.30 tolerated(0.4) benign(0.008) TCGA-EE-A2GI-06 3 121973001 121973001 C T CASR 5'UTR 0.35 TCGA-EE-A2GI-06 3 122002631 122002631 G A CASR Silent p.E620E 0.30 TCGA-EE-A2GI-06 3 122247434 122247434 G T PARP9 Missense_Mutation p.P781H 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 3 122354670 122354670 G A PARP15 Missense_Mutation p.G587E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 3 122405958 122405958 C T PARP14 Missense_Mutation p.P118L 0.31 tolerated(0.56) benign(0.03) TCGA-EE-A2GI-06 3 124456749 124456749 C T UMPS Silent p.P215P 0.30 TCGA-EE-A2GI-06 3 124732282 124732282 G A HEG1 Missense_Mutation p.S714F 0.30 deleterious(0.02) probably_damaging(0.95) TCGA-EE-A2GI-06 3 124839505 124839505 C T SLC12A8 Silent p.G254G 0.46 TCGA-EE-A2GI-06 3 124952124 124952124 G A ZNF148 Silent p.N482N 0.37 TCGA-EE-A2GI-06 3 126916110 126916110 C T C3orf56 Silent p.F194F 0.45 TCGA-EE-A2GI-06 3 127541184 127541184 A G MGLL 5'UTR 0.35 TCGA-EE-A2GI-06 3 130311917 130311917 G A COL6A6 Missense_Mutation p.E1462K 0.32 deleterious(0.03) probably_damaging(0.985) TCGA-EE-A2GI-06 3 132036235 132036235 C T ACPP 5'Flank 0.45 TCGA-EE-A2GI-06 3 13421065 13421065 C T NUP210 Missense_Mutation p.R325K 0.24 tolerated(1) benign(0.004) TCGA-EE-A2GI-06 3 135721177 135721177 G A PPP2R3A Missense_Mutation p.M279I 0.30 deleterious_low_confidence(0.04) benign(0.107) TCGA-EE-A2GI-06 3 13659748 13659748 C T FBLN2 Silent p.G634G 0.29 TCGA-EE-A2GI-06 3 13659764 13659764 G A FBLN2 Missense_Mutation p.D640N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 3 138121259 138121259 G A MRAS 3'UTR 0.45 TCGA-EE-A2GI-06 3 138184193 138184193 G A ESYT3 Missense_Mutation p.E367K 0.28 deleterious(0) possibly_damaging(0.759) TCGA-EE-A2GI-06 3 138184241 138184241 G A ESYT3 Missense_Mutation p.D383N 0.34 tolerated(0.06) benign(0.151) TCGA-EE-A2GI-06 3 138213745 138213745 G A CEP70 3'UTR 0.33 TCGA-EE-A2GI-06 3 13896123 13896123 C T WNT7A Missense_Mutation p.G159D 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 3 140178488 140178488 C A CLSTN2 Missense_Mutation p.P367T 0.33 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GI-06 3 140785431 140785431 C T SPSB4 Missense_Mutation p.P162L 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 3 141011256 141011256 C T ACPL2 Missense_Mutation p.L218F 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GI-06 3 141161981 141161981 G A ZBTB38 Missense_Mutation p.E251K 0.32 tolerated(0.18) benign(0.009) TCGA-EE-A2GI-06 3 141289762 141289762 T C RASA2 Missense_Mutation p.L291P 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 3 142720497 142720497 T C U2SURP Silent p.S9S 0.29 TCGA-EE-A2GI-06 3 143292979 143292979 G A SLC9A9 Silent p.F317F 0.33 TCGA-EE-A2GI-06 3 14801436 14801436 G A C3orf20 Silent p.L761L 0.16 TCGA-EE-A2GI-06 3 14814316 14814316 G A C3orf20 Silent p.V883V 0.40 TCGA-EE-A2GI-06 3 150908543 150908543 A G MED12L Missense_Mutation p.N598S 0.32 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2GI-06 3 150908568 150908568 C T MED12L Silent p.F606F 0.28 TCGA-EE-A2GI-06 3 151105867 151105867 C T MED12L Silent p.S1751S 0.47 TCGA-EE-A2GI-06 3 151161357 151161357 C T IGSF10 Missense_Mutation p.G1793E 0.28 tolerated(0.22) benign(0.361) TCGA-EE-A2GI-06 3 151164367 151164367 G A IGSF10 Silent p.S1134S 0.32 TCGA-EE-A2GI-06 3 155838494 155838494 G A KCNAB1 Missense_Mutation p.D32N 0.39 tolerated_low_confidence(0.08) benign(0.016) TCGA-EE-A2GI-06 3 156710999 156710999 G A RP11-6F2.3 5'Flank 0.31 TCGA-EE-A2GI-06 3 164754210 164754210 C T SI Missense_Mutation p.G828R 0.38 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GI-06 3 167254771 167254771 C T WDR49 Missense_Mutation p.R262Q 0.35 deleterious(0) benign(0.269) TCGA-EE-A2GI-06 3 167510533 167510533 C T SERPINI1 Nonsense_Mutation p.Q213* 0.24 TCGA-EE-A2GI-06 3 169644830 169644830 G A SAMD7 Silent p.R260R 0.26 TCGA-EE-A2GI-06 3 169977775 169977775 C T PRKCI Missense_Mutation p.S81L 0.36 tolerated(0.1) probably_damaging(0.994) TCGA-EE-A2GI-06 3 170908526 170908526 C T TNIK Silent p.G156G 0.23 TCGA-EE-A2GI-06 3 172643232 172643232 G A SPATA16 Missense_Mutation p.P378S 0.24 tolerated(0.24) possibly_damaging(0.803) TCGA-EE-A2GI-06 3 180372635 180372635 C T CCDC39 Missense_Mutation p.R282K 0.32 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 3 183770841 183770841 A G HTR3C 5'UTR 0.35 TCGA-EE-A2GI-06 3 183883252 183883252 A - DVL3 Frame_Shift_Del p.N246Tfs*37 0.20 TCGA-EE-A2GI-06 3 184094161 184094161 G A THPO 5'UTR 0.36 TCGA-EE-A2GI-06 3 185766567 185766567 G A ETV5 Missense_Mutation p.P465L 0.25 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GI-06 3 186965150 186965150 C T MASP1 Intron 0.32 TCGA-EE-A2GI-06 3 194062171 194062171 G A CPN2 Nonsense_Mutation p.Q421* 0.44 TCGA-EE-A2GI-06 3 196613461 196613461 C T SENP5 Missense_Mutation p.P470L 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 3 2967439 2967439 G A CNTN4 Missense_Mutation p.R445K 0.30 tolerated(0.72) benign(0.01) TCGA-EE-A2GI-06 3 31712392 31712392 A T OSBPL10 Missense_Mutation p.W604R 0.36 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GI-06 3 36872497 36872497 G A TRANK1 Silent p.I2815I 0.30 TCGA-EE-A2GI-06 3 369967 369967 G A CHL1 Silent p.G105G 0.25 TCGA-EE-A2GI-06 3 38357110 38357110 G A SLC22A14 Silent p.T480T 0.40 TCGA-EE-A2GI-06 3 38743371 38743371 C T SCN10A Nonsense_Mutation p.W1539* 0.32 TCGA-EE-A2GI-06 3 38946740 38946740 G A SCN11A Missense_Mutation p.P516S 0.32 tolerated(0.07) benign(0.014) TCGA-EE-A2GI-06 3 38988316 38988316 G A SCN11A Missense_Mutation p.S117L 0.32 tolerated(0.31) benign(0.118) TCGA-EE-A2GI-06 3 39133152 39133152 C T WDR48 Missense_Mutation p.L569F 0.15 deleterious(0) possibly_damaging(0.681) TCGA-EE-A2GI-06 3 39133154 39133154 C A WDR48 Silent p.L569L 0.16 TCGA-EE-A2GI-06 3 39227129 39227129 G A XIRP1 Missense_Mutation p.P1270S 0.44 tolerated(0.09) benign(0.008) TCGA-EE-A2GI-06 3 40503610 40503610 C T RPL14 Missense_Mutation p.P179S 0.21 tolerated(0.09) unknown(0) TCGA-EE-A2GI-06 3 42264721 42264721 C T TRAK1 Missense_Mutation p.S785L 0.41 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A2GI-06 3 423911 423911 G A CHL1 Silent p.R642R 0.30 TCGA-EE-A2GI-06 3 42740220 42740220 C T HHATL Missense_Mutation p.D155N 0.29 deleterious(0.01) benign(0.187) TCGA-EE-A2GI-06 3 42740221 42740221 C T HHATL Missense_Mutation p.M154I 0.31 tolerated(0.18) benign(0.006) TCGA-EE-A2GI-06 3 42916696 42916696 C T CYP8B1 Missense_Mutation p.E205K 0.32 tolerated(0.22) benign(0.002) TCGA-EE-A2GI-06 3 43381846 43381846 C T SNRK Missense_Mutation p.P267S 0.36 tolerated(0.16) benign(0.026) TCGA-EE-A2GI-06 3 45807204 45807204 G A SLC6A20 Silent p.I376I 0.27 TCGA-EE-A2GI-06 3 46245260 46245260 G A CCR1 Missense_Mutation p.T182I 0.27 tolerated(0.11) probably_damaging(0.933) TCGA-EE-A2GI-06 3 46496877 46496877 G A LTF Silent p.F185F 0.36 TCGA-EE-A2GI-06 3 47727614 47727614 A C SMARCC1 Missense_Mutation p.L437R 0.28 tolerated(0.52) benign(0.065) TCGA-EE-A2GI-06 3 4842138 4842138 C T ITPR1 Silent p.L2306L 0.38 TCGA-EE-A2GI-06 3 48573728 48573728 C T PFKFB4 Silent p.R267R 0.30 TCGA-EE-A2GI-06 3 48616816 48616816 G A COL7A1 Missense_Mutation p.P1765S 0.29 unknown(0) TCGA-EE-A2GI-06 3 49136085 49136085 G A QARS Missense_Mutation p.P635L 0.31 tolerated(0.1) probably_damaging(0.984) TCGA-EE-A2GI-06 3 50256359 50256359 C T SLC38A3 RNA 0.36 TCGA-EE-A2GI-06 3 51112817 51112817 G A DOCK3 Silent p.K165K 0.19 TCGA-EE-A2GI-06 3 51264821 51264821 C T DOCK3 Silent p.I495I 0.29 TCGA-EE-A2GI-06 3 51352490 51352490 G A DOCK3 Silent p.R1111R 0.19 TCGA-EE-A2GI-06 3 51968772 51968772 A - RRP9 Frame_Shift_Del p.L352Pfs*89 0.23 TCGA-EE-A2GI-06 3 52475391 52475391 C T SEMA3G Silent p.E234E 0.36 TCGA-EE-A2GI-06 3 52524782 52524782 C T NISCH Silent p.F1225F 0.39 TCGA-EE-A2GI-06 3 52552328 52552328 G A STAB1 Missense_Mutation p.E1588K 0.32 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2GI-06 3 52946618 52946618 G A SFMBT1 Missense_Mutation p.L556F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 3 54952852 54952852 G A LRTM1 Silent p.I224I 0.42 TCGA-EE-A2GI-06 3 56330423 56330423 C T ERC2 Missense_Mutation p.R233Q 0.33 tolerated(0.13) probably_damaging(0.937) TCGA-EE-A2GI-06 3 56763268 56763268 G A ARHGEF3 3'UTR 0.28 TCGA-EE-A2GI-06 3 58271172 58271172 C A ABHD6 Missense_Mutation p.Q277K 0.39 tolerated(0.16) benign(0.011) TCGA-EE-A2GI-06 3 64601088 64601088 T C ADAMTS9 Missense_Mutation p.D1033G 0.30 tolerated(0.2) possibly_damaging(0.74) TCGA-EE-A2GI-06 3 64627543 64627543 G A ADAMTS9 Nonsense_Mutation p.R613* 0.32 TCGA-EE-A2GI-06 3 66430623 66430623 C T LRIG1 3'UTR 0.32 TCGA-EE-A2GI-06 3 69169130 69169130 C T LMOD3 Missense_Mutation p.E126K 0.28 tolerated(0.21) possibly_damaging(0.478) TCGA-EE-A2GI-06 3 71247436 71247436 G A FOXP1 Missense_Mutation p.R33W 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GI-06 3 7721852 7721852 C T GRM7 Silent p.V856V 0.36 TCGA-EE-A2GI-06 3 78696802 78696802 G A ROBO1 Missense_Mutation p.P939L 0.34 deleterious(0.01) benign(0.103) TCGA-EE-A2GI-06 3 79639024 79639024 G A ROBO1 Missense_Mutation p.S13L 0.28 tolerated_low_confidence(0.18) benign(0) TCGA-EE-A2GI-06 3 89521633 89521633 G A EPHA3 Missense_Mutation p.D904N 0.27 deleterious(0.04) probably_damaging(0.949) TCGA-EE-A2GI-06 3 89521768 89521768 G A EPHA3 Missense_Mutation p.D949N 0.37 deleterious(0.02) benign(0.075) TCGA-EE-A2GI-06 3 97983347 97983347 C T OR5H6 Silent p.I73I 0.32 TCGA-EE-A2GI-06 3 98072952 98072952 C T OR5K4 Silent p.F85F 0.34 TCGA-EE-A2GI-06 3 9934917 9934917 C T JAGN1 Silent p.Y136Y 0.35 TCGA-EE-A2GI-06 4 100237445 100237445 G A ADH1B Missense_Mutation p.P92S 0.48 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2GI-06 4 107016744 107016744 G A TBCK Silent p.F822F 0.55 TCGA-EE-A2GI-06 4 1090587 1090587 C T RNF212 Missense_Mutation p.S71N 0.16 tolerated(0.2) possibly_damaging(0.58) TCGA-EE-A2GI-06 4 110866389 110866389 C T EGF Missense_Mutation p.P300S 0.58 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GI-06 4 114274972 114274972 C T ANK2 Missense_Mutation p.S1733L 0.53 benign(0.261) TCGA-EE-A2GI-06 4 114276594 114276594 C T ANK2 Missense_Mutation p.R2274C 0.45 benign(0.002) TCGA-EE-A2GI-06 4 114900103 114900103 C T ARSJ 5'UTR 0.50 TCGA-EE-A2GI-06 4 115586864 115586864 G A UGT8 Missense_Mutation p.G332R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 4 121631568 121631568 C T PRDM5 Missense_Mutation p.E542K 0.60 deleterious(0.01) benign(0.256) TCGA-EE-A2GI-06 4 122774202 122774202 C T BBS7 Missense_Mutation p.G253E 0.46 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GI-06 4 122833196 122833196 G A TRPC3 Missense_Mutation p.S465F 0.46 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GI-06 4 124235190 124235190 C T SPATA5 Nonsense_Mutation p.Q885* 0.43 TCGA-EE-A2GI-06 4 124323569 124323569 C T SPRY1 Missense_Mutation p.P275S 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 4 1305797 1305797 C T MAEA Missense_Mutation p.R34C 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 4 138453306 138453306 C T PCDH18 5'UTR 0.56 TCGA-EE-A2GI-06 4 152593939 152593939 G A PET112 Missense_Mutation p.S507F 0.41 deleterious(0.03) possibly_damaging(0.516) TCGA-EE-A2GI-06 4 156135983 156135983 C T NPY2R Silent p.L298L 0.10 TCGA-EE-A2GI-06 4 158257615 158257615 G A GRIA2 Silent p.G520G 0.36 TCGA-EE-A2GI-06 4 159791505 159791505 C T FNIP2 Missense_Mutation p.R945C 0.58 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 4 16040580 16040580 C T PROM1 Missense_Mutation p.D89N 0.21 tolerated(0.1) benign(0.11) TCGA-EE-A2GI-06 4 164271826 164271826 C T NPY5R Missense_Mutation p.S134L 0.43 tolerated(0.22) possibly_damaging(0.883) TCGA-EE-A2GI-06 4 177605038 177605038 C T VEGFC 3'UTR 0.57 TCGA-EE-A2GI-06 4 183600989 183600989 G A TENM3 Silent p.G499G 0.64 TCGA-EE-A2GI-06 4 187509767 187509767 G A FAT1 Silent p.S4582S 0.60 TCGA-EE-A2GI-06 4 20884291 20884291 C T KCNIP4 Missense_Mutation p.E35K 0.38 tolerated(0.79) benign(0.001) TCGA-EE-A2GI-06 4 2306962 2306962 G A ZFYVE28 Missense_Mutation p.P369S 0.59 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-EE-A2GI-06 4 23815708 23815708 G A PPARGC1A Silent p.F466F 0.23 TCGA-EE-A2GI-06 4 25777909 25777909 C T SEL1L3 Missense_Mutation p.E887K 0.20 tolerated(0.14) benign(0.298) TCGA-EE-A2GI-06 4 2659588 2659588 G A FAM193A Missense_Mutation p.R166K 0.26 deleterious(0.05) benign(0.099) TCGA-EE-A2GI-06 4 27024670 27024670 C T STIM2 3'UTR 0.54 TCGA-EE-A2GI-06 4 30724721 30724721 G T PCDH7 Silent p.A559A 0.59 TCGA-EE-A2GI-06 4 3123107 3123107 T C HTT Silent p.A407A 0.23 TCGA-EE-A2GI-06 4 38020051 38020051 C T TBC1D1 Missense_Mutation p.S320F 0.36 deleterious(0) possibly_damaging(0.879) TCGA-EE-A2GI-06 4 40356480 40356480 G A CHRNA9 Nonsense_Mutation p.W461* 0.32 TCGA-EE-A2GI-06 4 47427775 47427775 G A GABRB1 Missense_Mutation p.D389N 0.24 tolerated(0.18) benign(0.066) TCGA-EE-A2GI-06 4 47605664 47605664 C T CORIN Nonsense_Mutation p.W854* 0.41 TCGA-EE-A2GI-06 4 47944130 47944130 C T CNGA1 Missense_Mutation p.G231E 0.22 tolerated(0.25) probably_damaging(0.996) TCGA-EE-A2GI-06 4 53468187 53468187 G A USP46 Silent p.A252A 0.34 TCGA-EE-A2GI-06 4 55955863 55955863 G A KDR Missense_Mutation p.S1100F 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 4 5624544 5624544 G A EVC2 Missense_Mutation p.L741F 0.24 tolerated(0.44) possibly_damaging(0.894) TCGA-EE-A2GI-06 4 6055607 6055607 A T JAKMIP1 Intron 0.12 TCGA-EE-A2GI-06 4 62598791 62598791 G A LPHN3 Silent p.K238K 0.45 TCGA-EE-A2GI-06 4 659089 659089 G A PDE6B Missense_Mutation p.E747K 0.17 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2GI-06 4 69094496 69094496 A T TMPRSS11B Nonsense_Mutation p.C351* 0.47 TCGA-EE-A2GI-06 4 69094497 69094497 C T TMPRSS11B Missense_Mutation p.C351Y 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 4 69972921 69972921 C T UGT2B7 Missense_Mutation p.P344L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 4 70146513 70146513 G A UGT2B28 Missense_Mutation p.D99N 0.36 tolerated(0.79) benign(0.008) TCGA-EE-A2GI-06 4 71255649 71255649 C T SMR3B 3'UTR 0.49 TCGA-EE-A2GI-06 4 71507864 71507864 G A ENAM Missense_Mutation p.E241K 0.59 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A2GI-06 4 71555661 71555661 C T UTP3 Missense_Mutation p.P423S 0.48 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GI-06 4 74280794 74280794 C T ALB Silent p.V367V 0.47 TCGA-EE-A2GI-06 4 74282062 74282062 C T ALB Silent p.F427F 0.55 TCGA-EE-A2GI-06 4 75937790 75937790 C T PARM1 Missense_Mutation p.P67S 0.63 tolerated(0.19) benign(0.006) TCGA-EE-A2GI-06 4 76797736 76797736 C T PPEF2 Missense_Mutation p.G342R 0.49 tolerated(0.77) benign(0.001) TCGA-EE-A2GI-06 4 76857249 76857249 G A NAAA Intron 0.66 TCGA-EE-A2GI-06 4 77100829 77100829 G A SCARB2 Silent p.F151F 0.55 TCGA-EE-A2GI-06 4 7725580 7725580 G A SORCS2 Missense_Mutation p.D861N 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-EE-A2GI-06 4 81884756 81884756 G A C4orf22 Missense_Mutation p.R248K 0.50 tolerated(0.05) possibly_damaging(0.715) TCGA-EE-A2GI-06 4 8229300 8229300 G A SH3TC1 Missense_Mutation p.A627T 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GI-06 4 8229977 8229977 G A SH3TC1 Silent p.R852R 0.26 TCGA-EE-A2GI-06 4 8293165 8293165 C T HTRA3 Silent p.I259I 0.53 TCGA-EE-A2GI-06 4 8620164 8620164 G A CPZ Silent p.R504R 0.23 TCGA-EE-A2GI-06 4 87694091 87694091 C T PTPN13 Missense_Mutation p.H1782Y 0.64 tolerated(0.08) benign(0.003) TCGA-EE-A2GI-06 4 87746604 87746604 G A SLC10A6 Silent p.F296F 0.49 TCGA-EE-A2GI-06 4 88400633 88400633 C T SPARCL1 Missense_Mutation p.D639N 0.49 deleterious(0.02) probably_damaging(0.963) TCGA-EE-A2GI-06 4 90171324 90171324 G A GPRIN3 5'UTR 0.48 TCGA-EE-A2GI-06 4 955780 955780 A G DGKQ Missense_Mutation p.F769L 0.21 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GI-06 4 9784034 9784034 C T DRD5 Silent p.S127S 0.17 TCGA-EE-A2GI-06 4 9892302 9892302 G A SLC2A9 Missense_Mutation p.L383F 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 5 110407594 110407594 C T TSLP Silent p.F2F 0.16 TCGA-EE-A2GI-06 5 110820172 110820172 C T CAMK4 3'UTR 0.48 TCGA-EE-A2GI-06 5 110835784 110835784 C T STARD4 Missense_Mutation p.E140K 0.37 tolerated(0.16) benign(0.266) TCGA-EE-A2GI-06 5 11364892 11364892 G A CTNND2 Nonsense_Mutation p.Q430* 0.45 TCGA-EE-A2GI-06 5 121786322 121786322 G A SNCAIP Missense_Mutation p.G594R 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GI-06 5 1232951 1232951 C G SLC6A18 Silent p.S129S 0.32 TCGA-EE-A2GI-06 5 123980094 123980094 C G ZNF608 Missense_Mutation p.W1322C 0.16 tolerated(0.22) probably_damaging(0.999) TCGA-EE-A2GI-06 5 126790295 126790295 C T MEGF10 Silent p.S1006S 0.55 TCGA-EE-A2GI-06 5 128320887 128320887 G A SLC27A6 Silent p.G181G 0.42 TCGA-EE-A2GI-06 5 128862023 128862023 G A ADAMTS19 Silent p.G314G 0.39 TCGA-EE-A2GI-06 5 134870618 134870618 A T NEUROG1 3'UTR 0.44 TCGA-EE-A2GI-06 5 134870620 134870620 T C NEUROG1 3'UTR 0.35 TCGA-EE-A2GI-06 5 135390545 135390545 C T TGFBI Missense_Mutation p.R469C 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GI-06 5 13719066 13719066 G A DNAH5 Missense_Mutation p.L4142F 0.11 possibly_damaging(0.849) TCGA-EE-A2GI-06 5 137219247 137219247 G A MYOT Missense_Mutation p.E331K 0.10 tolerated(0.09) possibly_damaging(0.679) TCGA-EE-A2GI-06 5 13735333 13735333 C T DNAH5 Missense_Mutation p.E3890K 0.26 benign(0.292) TCGA-EE-A2GI-06 5 13762855 13762855 T C DNAH5 Missense_Mutation p.I3419M 0.47 possibly_damaging(0.639) TCGA-EE-A2GI-06 5 13788874 13788874 T C DNAH5 Silent p.G2866G 0.19 TCGA-EE-A2GI-06 5 13794053 13794053 C T DNAH5 Missense_Mutation p.G2668R 0.33 probably_damaging(0.988) TCGA-EE-A2GI-06 5 13811768 13811768 C T DNAH5 Silent p.L2465L 0.10 TCGA-EE-A2GI-06 5 13820480 13820480 G A DNAH5 Silent p.I2272I 0.38 TCGA-EE-A2GI-06 5 13900349 13900349 C T DNAH5 Missense_Mutation p.R742Q 0.33 possibly_damaging(0.553) TCGA-EE-A2GI-06 5 13901560 13901560 C T DNAH5 Missense_Mutation p.R618Q 0.41 benign(0.22) TCGA-EE-A2GI-06 5 139193026 139193026 T G PSD2 Missense_Mutation p.D168E 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GI-06 5 140175015 140175015 G A PCDHA2 Missense_Mutation p.G156R 0.38 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-EE-A2GI-06 5 140207705 140207705 G A PCDHA6 Missense_Mutation p.G10E 0.15 tolerated_low_confidence(0.16) benign(0.019) TCGA-EE-A2GI-06 5 140214287 140214287 G A PCDHA7 Missense_Mutation p.E107K 0.07 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EE-A2GI-06 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.40 tolerated_low_confidence(0.09) benign(0.294) TCGA-EE-A2GI-06 5 140221031 140221031 G A PCDHA8 Missense_Mutation p.G42D 0.14 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2GI-06 5 140221363 140221363 C T PCDHA8 Missense_Mutation p.P153S 0.15 tolerated_low_confidence(0.09) benign(0.072) TCGA-EE-A2GI-06 5 140222485 140222485 G A PCDHA8 Missense_Mutation p.E527K 0.07 deleterious_low_confidence(0.05) benign(0.41) TCGA-EE-A2GI-06 5 140228399 140228399 G A PCDHA9 Missense_Mutation p.E107K 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GI-06 5 140236082 140236082 G A PCDHA10 Missense_Mutation p.R150Q 0.11 deleterious_low_confidence(0.03) benign(0.004) TCGA-EE-A2GI-06 5 140248880 140248880 C T PCDHA11 Silent p.F64F 0.16 TCGA-EE-A2GI-06 5 140263823 140263823 C T PCDHA13 Missense_Mutation p.P657L 0.11 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A2GI-06 5 140348394 140348394 G A PCDHAC2 Silent p.V681V 0.11 TCGA-EE-A2GI-06 5 140433294 140433294 G A PCDHB1 Missense_Mutation p.G747R 0.10 deleterious(0.01) possibly_damaging(0.504) TCGA-EE-A2GI-06 5 140433295 140433295 G A PCDHB1 Missense_Mutation p.G747E 0.10 deleterious(0.03) benign(0.01) TCGA-EE-A2GI-06 5 140475968 140475968 C T PCDHB2 Missense_Mutation p.R532C 0.35 deleterious_low_confidence(0.02) benign(0.077) TCGA-EE-A2GI-06 5 140501749 140501749 G A PCDHB4 Missense_Mutation p.E57K 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-EE-A2GI-06 5 140515002 140515002 G A PCDHB5 5'UTR 0.15 TCGA-EE-A2GI-06 5 140516606 140516606 G A PCDHB5 Silent p.V530V 0.44 TCGA-EE-A2GI-06 5 140537813 140537813 C T PCDHB17 3'UTR 0.23 TCGA-EE-A2GI-06 5 140604707 140604707 G A PCDHB14 Missense_Mutation p.E544K 0.17 deleterious_low_confidence(0.01) benign(0.031) TCGA-EE-A2GI-06 5 140616176 140616176 G A PCDHB18 RNA 0.20 TCGA-EE-A2GI-06 5 140626350 140626350 A C PCDHB15 Silent p.R402R 0.41 TCGA-EE-A2GI-06 5 140724994 140724994 A G PCDHGA3 Missense_Mutation p.N465S 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2GI-06 5 140730112 140730112 G A PCDHGB1 Silent p.R95R 0.13 TCGA-EE-A2GI-06 5 140736306 140736306 C T PCDHGA4 Silent p.I513I 0.47 TCGA-EE-A2GI-06 5 140746159 140746159 C T PCDHGA5 Silent p.S754S 0.16 TCGA-EE-A2GI-06 5 140857375 140857375 C T PCDHGC3 Silent p.A564A 0.41 TCGA-EE-A2GI-06 5 140865196 140865196 C T PCDHGC4 Silent p.F152F 0.21 TCGA-EE-A2GI-06 5 140866233 140866233 G A PCDHGC4 Missense_Mutation p.R498K 0.21 tolerated(1) benign(0.038) TCGA-EE-A2GI-06 5 141520143 141520143 C T NDFIP1 Missense_Mutation p.P171S 0.42 tolerated(0.28) benign(0.39) TCGA-EE-A2GI-06 5 145439545 145439545 G A SH3RF2 Missense_Mutation p.G558R 0.22 tolerated(0.24) possibly_damaging(0.714) TCGA-EE-A2GI-06 5 145442282 145442282 C T SH3RF2 3'UTR 0.15 TCGA-EE-A2GI-06 5 146798162 146798162 C T DPYSL3 Missense_Mutation p.G168E 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 5 147449948 147449948 G A SPINK5 Silent p.K48K 0.46 TCGA-EE-A2GI-06 5 149360048 149360048 C T SLC26A2 Missense_Mutation p.H298Y 0.36 tolerated(0.06) benign(0.057) TCGA-EE-A2GI-06 5 150029242 150029242 C T SYNPO Missense_Mutation p.P713S 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2GI-06 5 150276287 150276287 G A ZNF300 Nonsense_Mutation p.Q188* 0.29 TCGA-EE-A2GI-06 5 150277702 150277702 C T ZNF300 Missense_Mutation p.G79R 0.25 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A2GI-06 5 150946298 150946298 G T FAT2 Missense_Mutation p.T732N 0.13 benign(0.375) TCGA-EE-A2GI-06 5 153085398 153085398 C T GRIA1 Missense_Mutation p.L542F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 5 153149814 153149814 G A GRIA1 Silent p.G713G 0.21 TCGA-EE-A2GI-06 5 154394675 154394675 G A KIF4B Missense_Mutation p.R419K 0.17 tolerated(0.53) benign(0.003) TCGA-EE-A2GI-06 5 156456634 156456634 G A HAVCR1 3'UTR 0.16 TCGA-EE-A2GI-06 5 156484973 156484973 G A HAVCR1 5'UTR 0.17 TCGA-EE-A2GI-06 5 159840982 159840982 G A SLU7 Missense_Mutation p.S110F 0.19 deleterious(0.01) benign(0.068) TCGA-EE-A2GI-06 5 167626007 167626007 C T TENM2 Missense_Mutation p.P1017L 0.50 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GI-06 5 167643915 167643915 G A TENM2 Missense_Mutation p.M1407I 0.45 deleterious(0) possibly_damaging(0.54) TCGA-EE-A2GI-06 5 169026118 169026118 C T SPDL1 Silent p.L427L 0.24 TCGA-EE-A2GI-06 5 169108785 169108785 G A DOCK2 Missense_Mutation p.G170R 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 5 169533504 169533504 C T FOXI1 Silent p.F181F 0.54 TCGA-EE-A2GI-06 5 172507687 172507687 C T CREBRF 5'UTR 0.48 TCGA-EE-A2GI-06 5 175995791 175995791 G A CDHR2 Silent p.V79V 0.39 TCGA-EE-A2GI-06 5 176017435 176017435 G A CDHR2 Silent p.R1121R 0.38 TCGA-EE-A2GI-06 5 176078761 176078761 C T TSPAN17 Missense_Mutation p.L49F 0.44 tolerated(0.53) possibly_damaging(0.674) TCGA-EE-A2GI-06 5 176309021 176309021 C T HK3 Missense_Mutation p.D721N 0.09 tolerated(1) benign(0.276) TCGA-EE-A2GI-06 5 176829663 176829663 T C F12 Missense_Mutation p.Q523R 0.39 tolerated(0.26) benign(0.071) TCGA-EE-A2GI-06 5 178309907 178309907 C T ZNF354B Missense_Mutation p.L152F 0.35 tolerated(0.69) benign(0.003) TCGA-EE-A2GI-06 5 178392033 178392033 C T ZNF454 Missense_Mutation p.H210Y 0.42 tolerated(0.18) benign(0) TCGA-EE-A2GI-06 5 178413358 178413358 G A GRM6 Missense_Mutation p.L633F 0.38 deleterious(0.04) possibly_damaging(0.461) TCGA-EE-A2GI-06 5 178540948 178540948 G A ADAMTS2 Missense_Mutation p.P1186S 0.52 tolerated_low_confidence(0.4) benign(0.044) TCGA-EE-A2GI-06 5 178553002 178553002 G A ADAMTS2 Missense_Mutation p.P916L 0.39 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2GI-06 5 179676046 179676046 C T MAPK9 Missense_Mutation p.M181I 0.41 tolerated(0.15) possibly_damaging(0.486) TCGA-EE-A2GI-06 5 180166434 180166434 G A OR2Y1 Missense_Mutation p.P209S 0.10 deleterious(0.01) possibly_damaging(0.687) TCGA-EE-A2GI-06 5 180582567 180582567 C T OR2V2 Missense_Mutation p.L209F 0.13 tolerated(0.06) benign(0.047) TCGA-EE-A2GI-06 5 21802340 21802340 G A CDH12 Missense_Mutation p.P398S 0.21 tolerated(0.13) benign(0.274) TCGA-EE-A2GI-06 5 23527283 23527283 G A PRDM9 Missense_Mutation p.E696K 0.26 deleterious(0.02) benign(0.006) TCGA-EE-A2GI-06 5 31313499 31313499 C T CDH6 Missense_Mutation p.S443L 0.39 tolerated(0.41) benign(0.008) TCGA-EE-A2GI-06 5 33637813 33637813 T G ADAMTS12 Missense_Mutation p.K586T 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2GI-06 5 34998865 34998865 G A AGXT2 Missense_Mutation p.R502C 0.13 deleterious(0.03) benign(0.005) TCGA-EE-A2GI-06 5 36271414 36271414 C T RANBP3L Splice_Site p.X31_splice 0.39 TCGA-EE-A2GI-06 5 38370509 38370509 G A EGFLAM Missense_Mutation p.M219I 0.14 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A2GI-06 5 38427205 38427205 G A EGFLAM Missense_Mutation p.M635I 0.19 tolerated(0.09) benign(0.028) TCGA-EE-A2GI-06 5 40934532 40934532 G A C7 Missense_Mutation p.E82K 0.10 tolerated(0.09) benign(0.077) TCGA-EE-A2GI-06 5 423970 423970 C T AHRR Silent p.L200L 0.20 TCGA-EE-A2GI-06 5 42804856 42804856 G A SEPP1 Missense_Mutation p.H146Y 0.50 deleterious(0.05) possibly_damaging(0.736) TCGA-EE-A2GI-06 5 43650655 43650655 T A NNT Silent p.A561A 0.44 TCGA-EE-A2GI-06 5 45353282 45353282 C T HCN1 Missense_Mutation p.D433N 0.41 tolerated(0.05) possibly_damaging(0.554) TCGA-EE-A2GI-06 5 49706745 49706745 C T EMB Silent p.E146E 0.19 TCGA-EE-A2GI-06 5 54403633 54403633 C T GZMA Missense_Mutation p.S76F 0.36 tolerated(0.5) benign(0.026) TCGA-EE-A2GI-06 5 54557275 54557275 G A DHX29 Missense_Mutation p.P1294L 0.19 deleterious(0) probably_damaging(0.941) TCGA-EE-A2GI-06 5 60063651 60063651 C T ELOVL7 Missense_Mutation p.R112K 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 5 65349981 65349981 G A ERBB2IP Silent p.K945K 0.41 TCGA-EE-A2GI-06 5 6652030 6652030 C T SRD5A1 Silent p.F123F 0.21 TCGA-EE-A2GI-06 5 68400448 68400448 C T SLC30A5 Intron 0.15 TCGA-EE-A2GI-06 5 68805231 68805231 C T OCLN Missense_Mutation p.P105L 0.54 tolerated(0.64) probably_damaging(0.928) TCGA-EE-A2GI-06 5 71752399 71752399 C T ZNF366 Silent p.G452G 0.13 TCGA-EE-A2GI-06 5 73181857 73181857 C T ARHGEF28 Silent p.L1080L 0.45 TCGA-EE-A2GI-06 5 74063027 74063027 G A GFM2 5'UTR 0.42 TCGA-EE-A2GI-06 5 76721606 76721606 G A PDE8B Silent p.K811K 0.07 TCGA-EE-A2GI-06 5 76729001 76729001 G A WDR41 Nonsense_Mutation p.Q447* 0.17 TCGA-EE-A2GI-06 5 79363932 79363932 G A THBS4 Missense_Mutation p.G444E 0.47 tolerated(0.05) probably_damaging(1) TCGA-EE-A2GI-06 5 79746313 79746313 T A ZFYVE16 Missense_Mutation p.I1097N 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 5 82876218 82876218 C T VCAN Missense_Mutation p.R3386C 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 5 82948551 82948551 G A HAPLN1 Nonsense_Mutation p.R65* 0.47 TCGA-EE-A2GI-06 5 90015894 90015894 G A GPR98 Silent p.T3159T 0.13 TCGA-EE-A2GI-06 5 90106233 90106233 G A GPR98 Silent p.L5052L 0.37 TCGA-EE-A2GI-06 5 90667261 90667261 G A ARRDC3 Missense_Mutation p.P401S 0.38 deleterious(0) probably_damaging(0.959) TCGA-EE-A2GI-06 5 95158402 95158402 A C GLRX 5'UTR 0.50 TCGA-EE-A2GI-06 5 9629301 9629301 G A TAS2R1 Missense_Mutation p.P282S 0.36 tolerated(0.2) benign(0.431) TCGA-EE-A2GI-06 5 98115297 98115297 G A RGMB Silent p.Q91Q 0.14 TCGA-EE-A2GI-06 6 10419659 10419659 C A TFAP2A 5'Flank 0.45 TCGA-EE-A2GI-06 6 105564670 105564670 G A BVES Missense_Mutation p.S241L 0.24 tolerated(0.05) possibly_damaging(0.685) TCGA-EE-A2GI-06 6 116757777 116757777 C T DSE Missense_Mutation p.R716C 0.45 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-EE-A2GI-06 6 117201716 117201716 G A RFX6 Silent p.E130E 0.10 TCGA-EE-A2GI-06 6 117246643 117246643 C T RFX6 Missense_Mutation p.S569F 0.23 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GI-06 6 12122286 12122286 C T HIVEP1 Missense_Mutation p.S753L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 6 12123120 12123120 G A HIVEP1 Missense_Mutation p.R1031K 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 6 121768239 121768239 C T GJA1 Silent p.I82I 0.24 TCGA-EE-A2GI-06 6 122733790 122733790 C T HSF2 Missense_Mutation p.R71C 0.29 deleterious(0.02) benign(0.294) TCGA-EE-A2GI-06 6 122744791 122744791 C T HSF2 Missense_Mutation p.S379L 0.47 deleterious(0.02) benign(0.276) TCGA-EE-A2GI-06 6 128134293 128134293 G A THEMIS Missense_Mutation p.P498L 0.21 tolerated(0.12) benign(0.226) TCGA-EE-A2GI-06 6 130465718 130465718 G A SAMD3 Missense_Mutation p.P504S 0.35 tolerated_low_confidence(0.09) benign(0.009) TCGA-EE-A2GI-06 6 130762386 130762386 G A TMEM200A Silent p.K273K 0.35 TCGA-EE-A2GI-06 6 130762728 130762728 C T TMEM200A Silent p.S387S 0.42 TCGA-EE-A2GI-06 6 131188660 131188660 G A EPB41L2 Missense_Mutation p.S890F 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 6 131190962 131190962 G A EPB41L2 Missense_Mutation p.P783L 0.42 tolerated(0.31) benign(0.038) TCGA-EE-A2GI-06 6 132891894 132891894 C T TAAR6 Missense_Mutation p.T145I 0.35 deleterious(0) probably_damaging(0.939) TCGA-EE-A2GI-06 6 132891895 132891895 C T TAAR6 Silent p.T145T 0.34 TCGA-EE-A2GI-06 6 139109522 139109522 C T CCDC28A Missense_Mutation p.S256F 0.21 deleterious(0) benign(0.027) TCGA-EE-A2GI-06 6 139266400 139266400 G A REPS1 Missense_Mutation p.A195V 0.28 tolerated(0.11) benign(0.145) TCGA-EE-A2GI-06 6 143091163 143091163 G A HIVEP2 Silent p.I1571I 0.22 TCGA-EE-A2GI-06 6 146755485 146755485 G A GRM1 Silent p.P1046P 0.20 TCGA-EE-A2GI-06 6 150322188 150322188 G A RAET1K RNA 0.45 TCGA-EE-A2GI-06 6 150690288 150690288 C T IYD Missense_Mutation p.R41C 0.35 tolerated(0.06) benign(0.032) TCGA-EE-A2GI-06 6 151130238 151130238 C T PLEKHG1 Intron 0.52 TCGA-EE-A2GI-06 6 152563399 152563399 G A SYNE1 Silent p.I6623I 0.20 TCGA-EE-A2GI-06 6 152708267 152708267 G A SYNE1 Silent p.F2809F 0.23 TCGA-EE-A2GI-06 6 152763308 152763308 C T SYNE1 Missense_Mutation p.G1304R 0.52 benign(0.012) TCGA-EE-A2GI-06 6 152826341 152826341 G A SYNE1 Missense_Mutation p.P258L 0.35 benign(0.217) TCGA-EE-A2GI-06 6 152841605 152841605 C T SYNE1 Missense_Mutation p.E100K 0.33 probably_damaging(0.995) TCGA-EE-A2GI-06 6 155485721 155485721 C T TIAM2 Missense_Mutation p.S734F 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 6 157522414 157522414 C T ARID1B Silent p.S1562S 0.20 TCGA-EE-A2GI-06 6 159682275 159682275 C T FNDC1 Missense_Mutation p.P1743L 0.36 deleterious(0) possibly_damaging(0.767) TCGA-EE-A2GI-06 6 160999672 160999672 C T LPA Missense_Mutation p.D1452N 0.35 tolerated(0.46) probably_damaging(0.982) TCGA-EE-A2GI-06 6 161054858 161054858 C T LPA Missense_Mutation p.G388R 0.45 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GI-06 6 16327052 16327052 G A ATXN1 Missense_Mutation p.T497I 0.48 tolerated(0.06) benign(0.051) TCGA-EE-A2GI-06 6 16328278 16328278 G A ATXN1 Silent p.S88S 0.39 TCGA-EE-A2GI-06 6 165957014 165957014 G A PDE10A Missense_Mutation p.P37L 0.35 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GI-06 6 166571865 166571865 C T T Missense_Mutation p.D416N 0.37 deleterious(0.02) possibly_damaging(0.747) TCGA-EE-A2GI-06 6 167549829 167549829 C T CCR6 Silent p.S37S 0.27 TCGA-EE-A2GI-06 6 168475947 168475947 G A FRMD1 Silent p.F94F 0.34 TCGA-EE-A2GI-06 6 169648950 169648950 G A THBS2 Silent p.F57F 0.40 TCGA-EE-A2GI-06 6 170592532 170592532 A G DLL1 Missense_Mutation p.I612T 0.19 deleterious(0) benign(0.158) TCGA-EE-A2GI-06 6 1742737 1742737 G A GMDS Silent p.V285V 0.17 TCGA-EE-A2GI-06 6 1742793 1742793 C T GMDS Missense_Mutation p.E267K 0.14 tolerated_low_confidence(0.85) benign(0.002) TCGA-EE-A2GI-06 6 17772153 17772153 G A KIF13A Missense_Mutation p.L1488F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GI-06 6 24146112 24146112 G A NRSN1 Missense_Mutation p.E176K 0.28 tolerated(0.16) benign(0.094) TCGA-EE-A2GI-06 6 24533825 24533825 C T ALDH5A1 Missense_Mutation p.S511F 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 6 28056771 28056771 G A ZNF165 Silent p.K327K 0.29 TCGA-EE-A2GI-06 6 2838904 2838904 G A SERPINB1 Missense_Mutation p.T62M 0.23 tolerated(0.1) benign(0.023) TCGA-EE-A2GI-06 6 28543259 28543259 G A SCAND3 Missense_Mutation p.S408L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.461) TCGA-EE-A2GI-06 6 29760053 29760053 G A HLA-V RNA 0.22 TCGA-EE-A2GI-06 6 30571928 30571928 C T PPP1R10 Missense_Mutation p.M455I 0.38 deleterious(0.03) benign(0.075) TCGA-EE-A2GI-06 6 3129332 3129332 C T BPHL Silent p.T144T 0.32 TCGA-EE-A2GI-06 6 31322884 31322884 C T HLA-B Missense_Mutation p.G338S 0.28 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-EE-A2GI-06 6 31918076 31918076 G A CFB Missense_Mutation p.G1009E 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A2GI-06 6 31939975 31939975 C T STK19 Missense_Mutation p.P68S 0.29 tolerated_low_confidence(0.19) benign(0.011) TCGA-EE-A2GI-06 6 31940120 31940120 G A STK19 Missense_Mutation p.E88K 0.19 tolerated_low_confidence(0.14) benign(0.091) TCGA-EE-A2GI-06 6 32065145 32065145 C T TNXB Nonsense_Mutation p.W162* 0.20 TCGA-EE-A2GI-06 6 32157699 32157699 G A PBX2 5'UTR 0.42 TCGA-EE-A2GI-06 6 32190494 32190494 G A NOTCH4 Missense_Mutation p.A82V 0.04 tolerated(0.34) benign(0.005) TCGA-EE-A2GI-06 6 33365810 33365810 C T KIFC1 Missense_Mutation p.S6F 0.38 tolerated_low_confidence(0.11) benign(0.149) TCGA-EE-A2GI-06 6 33385937 33385937 G A CUTA Missense_Mutation p.S9F 0.16 tolerated_low_confidence(1) unknown(0) TCGA-EE-A2GI-06 6 34101214 34101214 G A GRM4 Silent p.L20L 0.37 TCGA-EE-A2GI-06 6 35086086 35086086 G A TCP11 Missense_Mutation p.S504F 0.18 tolerated(0.73) benign(0.005) TCGA-EE-A2GI-06 6 35755830 35755830 C T CLPSL1 3'UTR 0.21 TCGA-EE-A2GI-06 6 35806524 35806524 G A SRPK1 Intron 0.43 TCGA-EE-A2GI-06 6 35838079 35838079 T C SRPK1 Missense_Mutation p.K324E 0.42 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 6 36106731 36106731 C T MAPK13 Missense_Mutation p.P306L 0.35 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2GI-06 6 37623535 37623535 C T MDGA1 Missense_Mutation p.D174N 0.32 tolerated(0.15) benign(0.025) TCGA-EE-A2GI-06 6 38565854 38565854 G A BTBD9 Missense_Mutation p.P6L 0.21 tolerated(0.14) unknown(0) TCGA-EE-A2GI-06 6 38749134 38749134 C T DNAH8 Silent p.P531P 0.23 TCGA-EE-A2GI-06 6 38816444 38816444 A T DNAH8 Missense_Mutation p.K1472I 0.19 benign(0.359) TCGA-EE-A2GI-06 6 38830154 38830154 G A DNAH8 Missense_Mutation p.G1860E 0.38 probably_damaging(1) TCGA-EE-A2GI-06 6 38854674 38854674 G A DNAH8 Missense_Mutation p.M2572I 0.47 probably_damaging(0.999) TCGA-EE-A2GI-06 6 38881675 38881675 G A DNAH8 Missense_Mutation p.D3087N 0.31 possibly_damaging(0.561) TCGA-EE-A2GI-06 6 38905789 38905789 G A DNAH8 Missense_Mutation p.R3651Q 0.34 benign(0.015) TCGA-EE-A2GI-06 6 39282733 39282733 T C KCNK16 3'UTR 0.18 TCGA-EE-A2GI-06 6 39513388 39513388 T C KIF6 Missense_Mutation p.K420E 0.52 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GI-06 6 39881527 39881527 G A MOCS1 Silent p.N212N 0.36 TCGA-EE-A2GI-06 6 41304152 41304152 T A NCR2 Missense_Mutation p.L127Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 6 43040994 43040994 C T KLC4 Missense_Mutation p.L573F 0.17 tolerated_low_confidence(1) possibly_damaging(0.453) TCGA-EE-A2GI-06 6 43214429 43214429 G A TTBK1 Missense_Mutation p.E11K 0.51 possibly_damaging(0.736) TCGA-EE-A2GI-06 6 43225648 43225648 C T TTBK1 Silent p.S320S 0.24 TCGA-EE-A2GI-06 6 43324955 43324955 G A ZNF318 Missense_Mutation p.S366F 0.18 possibly_damaging(0.847) TCGA-EE-A2GI-06 6 43472807 43472807 T C TJAP1 Silent p.T296T 0.49 TCGA-EE-A2GI-06 6 43596721 43596721 G A GTPBP2 Missense_Mutation p.P60L 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GI-06 6 46827023 46827023 G A GPR116 Missense_Mutation p.P873S 0.25 tolerated(1) benign(0) TCGA-EE-A2GI-06 6 49676848 49676848 C T CRISP2 Missense_Mutation p.G21E 0.16 tolerated(0.11) benign(0.178) TCGA-EE-A2GI-06 6 49989596 49989596 G A DEFB110 Missense_Mutation p.P18L 0.21 deleterious(0.01) benign(0.007) TCGA-EE-A2GI-06 6 55039539 55039539 G A HCRTR2 Missense_Mutation p.E52K 0.12 tolerated(0.84) benign(0.019) TCGA-EE-A2GI-06 6 55120098 55120098 C T HCRTR2 Silent p.I189I 0.26 TCGA-EE-A2GI-06 6 56044685 56044685 C T COL21A1 Missense_Mutation p.G111R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 6 56471298 56471298 G A DST Intron 0.31 TCGA-EE-A2GI-06 6 57467140 57467140 G A PRIM2 3'UTR 0.15 TCGA-EE-A2GI-06 6 7211126 7211126 G A RREB1 Missense_Mutation p.R172K 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GI-06 6 7374301 7374301 C T CAGE1 Missense_Mutation p.E251K 0.18 tolerated(0.11) benign(0.015) TCGA-EE-A2GI-06 6 73904392 73904392 C T KCNQ5 Missense_Mutation p.S704L 0.39 deleterious(0.02) benign(0.058) TCGA-EE-A2GI-06 6 73919663 73919663 G A RP11-257K9.8 3'UTR 0.47 TCGA-EE-A2GI-06 6 74063871 74063871 G T DPPA5 Missense_Mutation p.F26L 0.28 tolerated(0.14) benign(0.016) TCGA-EE-A2GI-06 6 74072857 74072857 C T KHDC3L Missense_Mutation p.S70F 0.48 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GI-06 6 75797404 75797404 C T COL12A1 Missense_Mutation p.G3024S 0.37 probably_damaging(0.999) TCGA-EE-A2GI-06 6 7580111 7580111 G A DSP Missense_Mutation p.D1230N 0.25 probably_damaging(0.995) TCGA-EE-A2GI-06 6 7583091 7583091 C T DSP Nonsense_Mutation p.Q1866* 0.13 TCGA-EE-A2GI-06 6 76022573 76022573 G A FILIP1 Missense_Mutation p.P992L 0.22 deleterious(0) benign(0.006) TCGA-EE-A2GI-06 6 83846981 83846981 C T DOPEY1 Missense_Mutation p.P1074S 0.24 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-EE-A2GI-06 6 83947495 83947495 G A ME1 Missense_Mutation p.P323S 0.40 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 6 84284828 84284828 C T SNAP91 Silent p.Q781Q 0.31 TCGA-EE-A2GI-06 6 87725313 87725313 C T HTR1E Silent p.R87R 0.51 TCGA-EE-A2GI-06 6 88173910 88173910 A G C6ORF165 Missense_Mutation p.K604R 0.16 tolerated(0.88) benign(0) TCGA-EE-A2GI-06 6 90387356 90387356 G A MDN1 Missense_Mutation p.H4158Y 0.25 benign(0.001) TCGA-EE-A2GI-06 6 90402561 90402561 G A MDN1 Silent p.A3396A 0.20 TCGA-EE-A2GI-06 6 90402813 90402813 C T MDN1 Silent p.K3312K 0.21 TCGA-EE-A2GI-06 6 90406124 90406124 G A MDN1 Missense_Mutation p.S3113L 0.13 benign(0.009) TCGA-EE-A2GI-06 7 100245114 100245114 C T ACTL6B Missense_Mutation p.E238K 0.34 tolerated(0.65) benign(0.006) TCGA-EE-A2GI-06 7 100333359 100333359 G A ZAN Missense_Mutation p.D24N 0.46 probably_damaging(0.996) TCGA-EE-A2GI-06 7 100388681 100388681 C T ZAN Missense_Mutation p.T2491I 0.37 unknown(0) TCGA-EE-A2GI-06 7 100552275 100552275 G A MUC3A Missense_Mutation p.M342I 0.22 tolerated(0.6) benign(0.009) TCGA-EE-A2GI-06 7 100680237 100680237 C T MUC17 Missense_Mutation p.S1847L 0.26 benign(0.307) TCGA-EE-A2GI-06 7 100683297 100683297 G A MUC17 Missense_Mutation p.G2867E 0.31 unknown(0) TCGA-EE-A2GI-06 7 100693850 100693850 G A MUC17 Missense_Mutation p.E4270K 0.39 unknown(0) TCGA-EE-A2GI-06 7 101840399 101840399 G A CUX1 Missense_Mutation p.G581R 0.29 deleterious(0) unknown(0) TCGA-EE-A2GI-06 7 101840438 101840438 C T CUX1 Nonsense_Mutation p.Q594* 0.27 TCGA-EE-A2GI-06 7 102584731 102584731 G C LRRC17 Missense_Mutation p.V335L 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A2GI-06 7 103301924 103301924 G A RELN Missense_Mutation p.S447L 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-EE-A2GI-06 7 105624729 105624729 C T CDHR3 Silent p.P169P 0.29 TCGA-EE-A2GI-06 7 106509677 106509677 G A PIK3CG Silent p.A557A 0.38 TCGA-EE-A2GI-06 7 108154646 108154646 A T PNPLA8 Missense_Mutation p.V383D 0.37 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2GI-06 7 112130055 112130055 C T LSMEM1 3'UTR 0.45 TCGA-EE-A2GI-06 7 11485934 11485934 C T THSD7A Missense_Mutation p.E940K 0.24 deleterious(0.01) benign(0.066) TCGA-EE-A2GI-06 7 116937720 116937720 C T WNT2 Missense_Mutation p.D267N 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 7 122839956 122839956 G A SLC13A1 Silent p.F15F 0.17 TCGA-EE-A2GI-06 7 123092772 123092772 C T IQUB 3'UTR 0.55 TCGA-EE-A2GI-06 7 123264718 123264718 G A ASB15 Missense_Mutation p.E183K 0.22 deleterious(0) possibly_damaging(0.733) TCGA-EE-A2GI-06 7 127013565 127013565 C T ZNF800 Missense_Mutation p.V609I 0.37 deleterious(0.02) probably_damaging(0.952) TCGA-EE-A2GI-06 7 128630095 128630095 A G TNPO3 Missense_Mutation p.V473A 0.39 tolerated(0.19) benign(0.001) TCGA-EE-A2GI-06 7 129046259 129046259 C T AHCYL2 Missense_Mutation p.S416F 0.34 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GI-06 7 129710498 129710498 G A KLHDC10 Silent p.Q5Q 0.36 TCGA-EE-A2GI-06 7 130368484 130368484 G A TSGA13 Missense_Mutation p.S17L 0.30 tolerated(0.58) possibly_damaging(0.504) TCGA-EE-A2GI-06 7 138601809 138601809 T C KIAA1549 Missense_Mutation p.T855A 0.47 deleterious(0.04) benign(0.034) TCGA-EE-A2GI-06 7 141631543 141631543 G A CLEC5A Silent p.I143I 0.31 TCGA-EE-A2GI-06 7 141631588 141631588 A G CLEC5A Silent p.F128F 0.23 TCGA-EE-A2GI-06 7 141673402 141673402 A T TAS2R38 Missense_Mutation p.F30I 0.30 tolerated(1) benign(0) TCGA-EE-A2GI-06 7 141758027 141758027 C T MGAM Missense_Mutation p.P1240S 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A2GI-06 7 141765418 141765418 C T MGAM Intron 0.31 TCGA-EE-A2GI-06 7 141803166 141803166 C T MGAM Missense_Mutation p.P1808L 0.38 tolerated(0.09) benign(0.002) TCGA-EE-A2GI-06 7 142008598 142008598 C T TRBV3-1 Missense_Mutation p.S24F 0.33 tolerated(0.12) benign(0.012) TCGA-EE-A2GI-06 7 142139727 142139727 C T TRBV7-6 Missense_Mutation p.G15E 0.30 tolerated(0.13) benign(0.059) TCGA-EE-A2GI-06 7 142176363 142176363 C T TRBV7-4 Missense_Mutation p.D105N 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 7 142379012 142379012 C T MTRNR2L6 3'Flank 0.39 TCGA-EE-A2GI-06 7 142448482 142448482 G A TRBV29-1 Missense_Mutation p.D26N 0.30 tolerated(0.36) benign(0.381) TCGA-EE-A2GI-06 7 142563955 142563955 G C EPHB6 Missense_Mutation p.G448A 0.22 tolerated(0.62) benign(0.123) TCGA-EE-A2GI-06 7 142574331 142574331 T A TRPV6 Missense_Mutation p.T198S 0.34 deleterious(0.03) benign(0.265) TCGA-EE-A2GI-06 7 142636606 142636606 G A C7orf34 5'UTR 0.20 TCGA-EE-A2GI-06 7 142651377 142651377 G A KEL Missense_Mutation p.S273F 0.32 tolerated(0.44) benign(0.007) TCGA-EE-A2GI-06 7 143048913 143048913 C T CLCN1 Missense_Mutation p.S941F 0.33 tolerated_low_confidence(0.06) benign(0.11) TCGA-EE-A2GI-06 7 143053712 143053712 C T FAM131B Silent p.R338R 0.32 TCGA-EE-A2GI-06 7 143270136 143270136 G A CTAGE15 Missense_Mutation p.R409Q 0.19 tolerated(0.08) benign(0.345) TCGA-EE-A2GI-06 7 143701556 143701556 C T OR6B1 Missense_Mutation p.S156F 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GI-06 7 143747760 143747760 G A OR2A5 Missense_Mutation p.R89K 0.24 tolerated(1) benign(0) TCGA-EE-A2GI-06 7 143793115 143793115 G A OR2A12 Nonsense_Mutation p.W305* 0.34 TCGA-EE-A2GI-06 7 143885340 143885340 G A ARHGEF35 Missense_Mutation p.P46L 0.89 tolerated(0.65) benign(0.011) TCGA-EE-A2GI-06 7 144015350 144015350 C T OR2A1 Silent p.L45L 0.21 TCGA-EE-A2GI-06 7 144060386 144060386 A T ARHGEF5 Missense_Mutation p.E208D 0.13 deleterious(0.01) benign(0.339) TCGA-EE-A2GI-06 7 144060387 144060387 G A ARHGEF5 Missense_Mutation p.E209K 0.13 tolerated(0.15) benign(0.018) TCGA-EE-A2GI-06 7 144061029 144061029 C T ARHGEF5 Missense_Mutation p.P423S 0.57 tolerated(0.08) benign(0.213) TCGA-EE-A2GI-06 7 144062425 144062425 C T ARHGEF5 Missense_Mutation p.P888L 0.15 tolerated(0.09) benign(0.008) TCGA-EE-A2GI-06 7 147926772 147926772 C T CNTNAP2 Silent p.T1094T 0.36 TCGA-EE-A2GI-06 7 148288132 148288132 C T C7orf33 Missense_Mutation p.R39C 0.28 deleterious_low_confidence(0) benign(0.09) TCGA-EE-A2GI-06 7 149420913 149420913 C T KRBA1 Silent p.P287P 0.34 TCGA-EE-A2GI-06 7 149482056 149482056 T C SSPO RNA 0.23 TCGA-EE-A2GI-06 7 150389905 150389905 G A GIMAP2 Silent p.G177G 0.39 TCGA-EE-A2GI-06 7 150488648 150488648 C T TMEM176B Missense_Mutation p.E262K 0.28 tolerated(0.06) benign(0.279) TCGA-EE-A2GI-06 7 150488649 150488649 C T TMEM176B Silent p.R261R 0.26 TCGA-EE-A2GI-06 7 150698458 150698458 C T NOS3 Missense_Mutation p.P458L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 7 150932643 150932643 G A CHPF2 Nonsense_Mutation p.W258* 0.33 TCGA-EE-A2GI-06 7 151483612 151483612 C G PRKAG2 Missense_Mutation p.A44P 0.17 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-EE-A2GI-06 7 152520574 152520574 G A ACTR3B Missense_Mutation p.G278R 0.21 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GI-06 7 152551617 152551617 C T ACTR3B Silent p.P412P 0.35 TCGA-EE-A2GI-06 7 154684282 154684282 G A DPP6 3'UTR 0.55 TCGA-EE-A2GI-06 7 157926593 157926593 C T PTPRN2 Silent p.V444V 0.28 TCGA-EE-A2GI-06 7 157985113 157985113 C T PTPRN2 Missense_Mutation p.R152Q 0.38 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 7 158896490 158896490 G A VIPR2 Silent p.F105F 0.31 TCGA-EE-A2GI-06 7 20199187 20199187 G A MACC1 Missense_Mutation p.S266L 0.38 tolerated(0.25) benign(0.027) TCGA-EE-A2GI-06 7 20766722 20766722 C T ABCB5 Silent p.A895A 0.30 TCGA-EE-A2GI-06 7 23871957 23871957 G A STK31 Missense_Mutation p.R1011K 0.33 tolerated_low_confidence(0.2) benign(0.004) TCGA-EE-A2GI-06 7 24703293 24703293 G A MPP6 Missense_Mutation p.G246R 0.25 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A2GI-06 7 26404214 26404214 C T SNX10 Silent p.F57F 0.45 TCGA-EE-A2GI-06 7 26883666 26883666 T C SKAP2 Missense_Mutation p.D97G 0.26 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A2GI-06 7 2959017 2959017 G A CARD11 Silent p.P833P 0.38 TCGA-EE-A2GI-06 7 2959206 2959206 G A CARD11 Silent p.I770I 0.20 TCGA-EE-A2GI-06 7 30492007 30492007 G A NOD1 Silent p.F342F 0.38 TCGA-EE-A2GI-06 7 31864483 31864483 C T PDE1C Silent p.S528S 0.38 TCGA-EE-A2GI-06 7 34874056 34874056 G A NPSR1 Silent p.V247V 0.45 TCGA-EE-A2GI-06 7 36370647 36370647 G A KIAA0895 Nonsense_Mutation p.Q450* 0.25 TCGA-EE-A2GI-06 7 36458935 36458935 C T ANLN Silent p.V572V 0.29 TCGA-EE-A2GI-06 7 36458936 36458936 C T ANLN Silent p.L573L 0.26 TCGA-EE-A2GI-06 7 36478869 36478869 G A ANLN Silent p.V980V 0.35 TCGA-EE-A2GI-06 7 37382274 37382274 G A ELMO1 Silent p.I7I 0.30 TCGA-EE-A2GI-06 7 40228112 40228112 G A SUGCT Missense_Mutation p.R89Q 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 7 42005140 42005140 G A GLI3 Silent p.L1177L 0.37 TCGA-EE-A2GI-06 7 43547680 43547680 G A HECW1 Silent p.R1272R 0.37 TCGA-EE-A2GI-06 7 44119559 44119559 C G POLM Splice_Site p.X125_splice 0.46 TCGA-EE-A2GI-06 7 44189570 44189570 C T GCK Missense_Mutation p.G194R 0.30 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GI-06 7 47866967 47866967 G A PKD1L1 Missense_Mutation p.R2279C 0.36 tolerated(0.07) possibly_damaging(0.893) TCGA-EE-A2GI-06 7 47874589 47874589 C T PKD1L1 Missense_Mutation p.G2035R 0.27 tolerated(0.43) benign(0.003) TCGA-EE-A2GI-06 7 48312795 48312795 G A ABCA13 Missense_Mutation p.G1178S 0.33 possibly_damaging(0.619) TCGA-EE-A2GI-06 7 48313338 48313338 G A ABCA13 Missense_Mutation p.E1359K 0.30 benign(0.081) TCGA-EE-A2GI-06 7 5352305 5352305 G A TNRC18 Silent p.P2739P 0.30 TCGA-EE-A2GI-06 7 55496114 55496114 C T LANCL2 Missense_Mutation p.P411L 0.24 deleterious(0.02) benign(0.335) TCGA-EE-A2GI-06 7 56174180 56174180 G A CHCHD2 5'UTR 0.43 TCGA-EE-A2GI-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.46 TCGA-EE-A2GI-06 7 57188460 57188460 G A ZNF479 Missense_Mutation p.S221F 0.11 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GI-06 7 6042170 6042170 G A PMS2 Missense_Mutation p.R151C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 7 64442379 64442379 A G ZNF117 5'UTR 0.21 TCGA-EE-A2GI-06 7 7495724 7495724 C T COL28A1 Missense_Mutation p.G441E 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 7 7530255 7530255 G A COL28A1 Missense_Mutation p.P350L 0.25 deleterious(0.03) possibly_damaging(0.718) TCGA-EE-A2GI-06 7 76140982 76140982 G A UPK3B Missense_Mutation p.G137S 0.47 tolerated_low_confidence(0.74) benign(0.002) TCGA-EE-A2GI-06 7 7628126 7628126 C T MIOS Intron 0.38 TCGA-EE-A2GI-06 7 76889394 76889394 T C CCDC146 Missense_Mutation p.V276A 0.41 tolerated(0.1) benign(0.008) TCGA-EE-A2GI-06 7 77010657 77010657 G A GSAP Missense_Mutation p.R181C 0.26 deleterious(0) possibly_damaging(0.711) TCGA-EE-A2GI-06 7 80293749 80293749 A G CD36 Missense_Mutation p.K213E 0.32 tolerated(0.32) benign(0.155) TCGA-EE-A2GI-06 7 81334775 81334775 T C HGF Silent p.R647R 0.43 TCGA-EE-A2GI-06 7 82583985 82583985 G A PCLO Missense_Mutation p.T2095I 0.26 unknown(0) TCGA-EE-A2GI-06 7 86394533 86394533 G A GRM3 Silent p.G24G 0.32 TCGA-EE-A2GI-06 7 86824126 86824126 C T DMTF1 Missense_Mutation p.P719S 0.41 deleterious_low_confidence(0.01) benign(0.211) TCGA-EE-A2GI-06 7 87774745 87774745 G A ADAM22 Missense_Mutation p.G470R 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GI-06 7 87810903 87810903 G A ADAM22 Missense_Mutation p.R831Q 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GI-06 7 895996 895996 C T SUN1 Missense_Mutation p.A451V 0.26 tolerated(0.22) benign(0.264) TCGA-EE-A2GI-06 7 91712761 91712761 C T AKAP9 Missense_Mutation p.S2813F 0.25 benign(0.031) TCGA-EE-A2GI-06 7 92731710 92731710 C T SAMD9 Missense_Mutation p.G1234E 0.29 deleterious(0.02) possibly_damaging(0.663) TCGA-EE-A2GI-06 7 92762117 92762117 G A SAMD9L Silent p.S1056S 0.28 TCGA-EE-A2GI-06 7 92762118 92762118 G A SAMD9L Missense_Mutation p.S1056F 0.59 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GI-06 7 92763495 92763495 C T SAMD9L Missense_Mutation p.R597K 0.32 deleterious(0.03) possibly_damaging(0.801) TCGA-EE-A2GI-06 7 94059781 94059781 A T COL1A2 3'UTR 0.45 TCGA-EE-A2GI-06 7 97822735 97822736 - T LMTK2 Frame_Shift_Ins p.A989Sfs*3 0.22 TCGA-EE-A2GI-06 7 97833295 97833295 C T LMTK2 Missense_Mutation p.P1427L 0.41 deleterious(0) probably_damaging(0.928) TCGA-EE-A2GI-06 7 97852324 97852324 C T TECPR1 Missense_Mutation p.G969D 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GI-06 7 99145993 99145993 G A FAM200A Missense_Mutation p.P13L 0.33 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-EE-A2GI-06 7 99145994 99145994 G A FAM200A Missense_Mutation p.P13S 0.34 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-EE-A2GI-06 7 99359815 99359815 G A CYP3A4 Missense_Mutation p.P368S 0.25 deleterious(0.02) possibly_damaging(0.722) TCGA-EE-A2GI-06 7 99367468 99367468 G A CYP3A4 Silent p.I148I 0.25 TCGA-EE-A2GI-06 7 99998722 99998722 A G ZCWPW1 Missense_Mutation p.V621A 0.29 tolerated_low_confidence(0.07) benign(0.006) TCGA-EE-A2GI-06 8 100865745 100865745 C T VPS13B Silent p.D3401D 0.26 TCGA-EE-A2GI-06 8 101075804 101075804 C T RGS22 Missense_Mutation p.A398T 0.26 tolerated(0.07) benign(0.152) TCGA-EE-A2GI-06 8 101075805 101075805 C T RGS22 Silent p.R397R 0.26 TCGA-EE-A2GI-06 8 10159066 10159066 C T MSRA Silent p.V118V 0.30 TCGA-EE-A2GI-06 8 104427482 104427482 A G DCAF13 Silent p.E88E 0.20 TCGA-EE-A2GI-06 8 10466429 10466429 C T RP1L1 Missense_Mutation p.E1727K 0.21 unknown(0) TCGA-EE-A2GI-06 8 10466652 10466652 C T RP1L1 Silent p.E1652E 0.46 TCGA-EE-A2GI-06 8 105503244 105503244 C T LRP12 Missense_Mutation p.R746Q 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A2GI-06 8 107782250 107782250 G A ABRA Nonsense_Mutation p.Q57* 0.25 TCGA-EE-A2GI-06 8 110408291 110408291 C T PKHD1L1 Nonsense_Mutation p.R283* 0.33 TCGA-EE-A2GI-06 8 110456087 110456087 A G PKHD1L1 Missense_Mutation p.T1583A 0.29 tolerated(0.06) probably_damaging(0.942) TCGA-EE-A2GI-06 8 110498933 110498933 G A PKHD1L1 Missense_Mutation p.G3255R 0.33 deleterious(0) benign(0.358) TCGA-EE-A2GI-06 8 113267561 113267561 G A CSMD3 Missense_Mutation p.P3320S 0.33 tolerated(0.1) benign(0.16) TCGA-EE-A2GI-06 8 113323360 113323360 C T CSMD3 Missense_Mutation p.G2578R 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 8 113697886 113697886 T A CSMD3 Missense_Mutation p.N744I 0.18 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GI-06 8 119634121 119634121 C T SAMD12 5'UTR 0.21 TCGA-EE-A2GI-06 8 124968246 124968246 G A FER1L6 Missense_Mutation p.G3E 0.27 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-EE-A2GI-06 8 125580787 125580788 AC T MTSS1 Intron 0.30 TCGA-EE-A2GI-06 8 126061263 126061263 G T KIAA0196 Missense_Mutation p.N788K 0.30 tolerated(0.37) benign(0.079) TCGA-EE-A2GI-06 8 131104224 131104224 G A ASAP1 Missense_Mutation p.P856L 0.26 tolerated(0.12) benign(0.011) TCGA-EE-A2GI-06 8 131792904 131792904 C T ADCY8 Missense_Mutation p.G1163E 0.35 deleterious(0) benign(0.02) TCGA-EE-A2GI-06 8 133885424 133885424 C T TG Missense_Mutation p.T199I 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GI-06 8 139145022 139145022 C T FAM135B Missense_Mutation p.M1345I 0.30 deleterious(0) probably_damaging(0.945) TCGA-EE-A2GI-06 8 141460944 141460944 G A TRAPPC9 Missense_Mutation p.L275F 0.22 deleterious(0.04) possibly_damaging(0.623) TCGA-EE-A2GI-06 8 142154307 142154307 C T DENND3 Silent p.F148F 0.41 TCGA-EE-A2GI-06 8 142482967 142482967 G A MROH5 3'UTR 0.27 TCGA-EE-A2GI-06 8 144620279 144620279 G A ZC3H3 Missense_Mutation p.P420S 0.26 tolerated(0.22) benign(0.051) TCGA-EE-A2GI-06 8 144942663 144942663 T C EPPK1 Missense_Mutation p.I1587V 0.24 benign(0.051) TCGA-EE-A2GI-06 8 144945385 144945385 C T EPPK1 Silent p.A679A 0.33 TCGA-EE-A2GI-06 8 144995943 144995943 G A PLEC Silent p.L2819L 0.34 TCGA-EE-A2GI-06 8 145095479 145095479 C A SPATC1 Silent p.S259S 0.26 TCGA-EE-A2GI-06 8 145095815 145095815 C T SPATC1 Silent p.S371S 0.36 TCGA-EE-A2GI-06 8 145652322 145652322 G T VPS28 Missense_Mutation p.H3N 0.29 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-EE-A2GI-06 8 145749809 145749809 G A LRRC14 3'UTR 0.31 TCGA-EE-A2GI-06 8 15967567 15967567 C T MSR1 3'UTR 0.32 TCGA-EE-A2GI-06 8 16026222 16026222 G A MSR1 Silent p.I125I 0.28 TCGA-EE-A2GI-06 8 1626440 1626440 G A DLGAP2 Silent p.L703L 0.32 TCGA-EE-A2GI-06 8 17188682 17188682 T C MTMR7 Missense_Mutation p.N281S 0.30 tolerated(0.93) benign(0.004) TCGA-EE-A2GI-06 8 17447010 17447010 C T PDGFRL Missense_Mutation p.P30L 0.36 deleterious(0.01) benign(0.147) TCGA-EE-A2GI-06 8 19805791 19805791 C T LPL Silent p.S63S 0.23 TCGA-EE-A2GI-06 8 22864281 22864281 C T RHOBTB2 Missense_Mutation p.R197W 0.23 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GI-06 8 24181423 24181423 C T ADAM28 Missense_Mutation p.T266I 0.40 deleterious(0) possibly_damaging(0.832) TCGA-EE-A2GI-06 8 24181424 24181424 C T ADAM28 Silent p.T266T 0.40 TCGA-EE-A2GI-06 8 24350607 24350607 C T ADAM7 Silent p.L569L 0.36 TCGA-EE-A2GI-06 8 24776021 24776021 G A NEFM Missense_Mutation p.E885K 0.26 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-EE-A2GI-06 8 24813304 24813304 C T CTD-2168K21.2 5'Flank 0.32 TCGA-EE-A2GI-06 8 25240208 25240208 T C DOCK5 Missense_Mutation p.Y1349H 0.30 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GI-06 8 25708231 25708231 G A EBF2 Silent p.I525I 0.18 TCGA-EE-A2GI-06 8 27097515 27097515 G A STMN4 Silent p.A188A 0.25 TCGA-EE-A2GI-06 8 27255255 27255255 C T PTK2B Missense_Mutation p.P52S 0.22 tolerated(0.78) benign(0.027) TCGA-EE-A2GI-06 8 30332344 30332344 A G RBPMS Missense_Mutation p.E39G 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GI-06 8 3200950 3200950 G A CSMD1 Missense_Mutation p.S1166F 0.38 possibly_damaging(0.694) TCGA-EE-A2GI-06 8 39027493 39027493 C T ADAM32 Missense_Mutation p.R298C 0.23 tolerated(0.05) benign(0.063) TCGA-EE-A2GI-06 8 39103614 39103614 C T ADAM32 Missense_Mutation p.R611C 0.27 tolerated(0.16) possibly_damaging(0.735) TCGA-EE-A2GI-06 8 39468132 39468132 G A ADAM18 Missense_Mutation p.M143I 0.28 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 8 39495126 39495126 C T ADAM18 Missense_Mutation p.S244F 0.22 deleterious(0.03) benign(0.2) TCGA-EE-A2GI-06 8 39525702 39525702 G A ADAM18 Silent p.K504K 0.21 TCGA-EE-A2GI-06 8 39840240 39840240 G A IDO2 Missense_Mutation p.V142I 0.28 deleterious(0.04) benign(0.328) TCGA-EE-A2GI-06 8 41394708 41394708 C T GINS4 Missense_Mutation p.L65F 0.37 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A2GI-06 8 41577278 41577278 C T ANK1 Silent p.L369L 0.30 TCGA-EE-A2GI-06 8 55537893 55537893 C T RP1 Missense_Mutation p.S484L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 8 55538703 55538703 C T RP1 Missense_Mutation p.S754F 0.26 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GI-06 8 55541724 55541724 C T RP1 Missense_Mutation p.P1761L 0.21 tolerated(0.06) benign(0.02) TCGA-EE-A2GI-06 8 55542164 55542164 G A RP1 Missense_Mutation p.D1908N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 8 57026421 57026421 G A MOS Missense_Mutation p.P41S 0.47 tolerated(0.12) possibly_damaging(0.719) TCGA-EE-A2GI-06 8 63973924 63973924 G A TTPA Missense_Mutation p.P242S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 8 67086917 67086917 G A TRIM55 3'UTR 0.33 TCGA-EE-A2GI-06 8 67578269 67578269 G A VCPIP1 Missense_Mutation p.L309F 0.28 deleterious(0.03) probably_damaging(0.914) TCGA-EE-A2GI-06 8 67786709 67786709 A G MCMDC2 Intron 0.33 TCGA-EE-A2GI-06 8 6782385 6782385 C T DEFA6 Silent p.G86G 0.40 TCGA-EE-A2GI-06 8 69020509 69020509 C T PREX2 Nonsense_Mutation p.Q961* 0.30 TCGA-EE-A2GI-06 8 6914111 6914111 C T DEFA5 Missense_Mutation p.E37K 0.24 tolerated(0.19) benign(0.066) TCGA-EE-A2GI-06 8 70570767 70570767 T G SULF1 Silent p.G871G 0.33 TCGA-EE-A2GI-06 8 7320321 7320321 T C SPAG11B Missense_Mutation p.E41G 0.17 deleterious(0.03) possibly_damaging(0.887) TCGA-EE-A2GI-06 8 73850312 73850312 G A KCNB2 Missense_Mutation p.E908K 0.27 deleterious_low_confidence(0.01) benign(0.188) TCGA-EE-A2GI-06 8 79645919 79645919 C T IL7 3'UTR 0.16 TCGA-EE-A2GI-06 8 86385958 86385958 T C CA2 Missense_Mutation p.L90S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 8 87125949 87125949 C T ATP6V0D2 Missense_Mutation p.H48Y 0.24 tolerated(0.12) benign(0.208) TCGA-EE-A2GI-06 8 88886223 88886223 C T DCAF4L2 5'UTR 0.23 TCGA-EE-A2GI-06 8 92301414 92301414 G A SLC26A7 Missense_Mutation p.G82R 0.35 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GI-06 8 93003996 93003996 C T RUNX1T1 Missense_Mutation p.G299S 0.23 tolerated(0.21) probably_damaging(0.985) TCGA-EE-A2GI-06 8 95518884 95518884 G A KIAA1429 Missense_Mutation p.S1314F 0.39 deleterious(0) benign(0.326) TCGA-EE-A2GI-06 8 95850803 95850803 C T INTS8 Missense_Mutation p.P325L 0.31 tolerated(0.32) possibly_damaging(0.625) TCGA-EE-A2GI-06 8 95866068 95866068 G A INTS8 Silent p.L559L 0.33 TCGA-EE-A2GI-06 8 99170302 99170302 T A POP1 Missense_Mutation p.S960T 0.31 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2GI-06 9 107298049 107298049 C T OR13C3 3'UTR 0.42 TCGA-EE-A2GI-06 9 107367647 107367647 C T OR13C2 Missense_Mutation p.E88K 0.54 tolerated(0.7) benign(0.008) TCGA-EE-A2GI-06 9 113173840 113173840 A C SVEP1 Missense_Mutation p.Y2051D 0.43 probably_damaging(1) TCGA-EE-A2GI-06 9 113194310 113194310 G A SVEP1 Silent p.V1746V 0.52 TCGA-EE-A2GI-06 9 116060012 116060012 C T RNF183 Silent p.L151L 0.59 TCGA-EE-A2GI-06 9 116246496 116246496 C T RGS3 Missense_Mutation p.H202Y 0.55 deleterious(0.01) benign(0.349) TCGA-EE-A2GI-06 9 117553092 117553092 C T TNFSF15 Missense_Mutation p.M132I 0.46 tolerated(0.11) possibly_damaging(0.483) TCGA-EE-A2GI-06 9 117666403 117666403 C T TNFSF8 Silent p.Q171Q 0.47 TCGA-EE-A2GI-06 9 117808887 117808887 C T TNC Missense_Mutation p.D1643N 0.55 tolerated(0.17) probably_damaging(0.962) TCGA-EE-A2GI-06 9 118949766 118949766 G A PAPPA Missense_Mutation p.R250Q 0.49 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2GI-06 9 120476461 120476461 G A TLR4 Silent p.E685E 0.58 TCGA-EE-A2GI-06 9 125289540 125289540 G A OR1N1 Silent p.F11F 0.50 TCGA-EE-A2GI-06 9 125377496 125377496 C T OR1Q1 Silent p.T160T 0.57 TCGA-EE-A2GI-06 9 125562894 125562894 G A OR1K1 Missense_Mutation p.A165T 0.51 tolerated(0.18) benign(0.137) TCGA-EE-A2GI-06 9 131186786 131186786 C T CERCAM Missense_Mutation p.S220F 0.61 deleterious(0) possibly_damaging(0.498) TCGA-EE-A2GI-06 9 131396564 131396564 A T WDR34 Missense_Mutation p.L438Q 0.59 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GI-06 9 134321958 134321958 C G PRRC2B Missense_Mutation p.R262G 0.45 tolerated(0.06) probably_damaging(0.981) TCGA-EE-A2GI-06 9 135804225 135804225 G A TSC1 Missense_Mutation p.A12V 0.61 deleterious(0.05) benign(0.099) TCGA-EE-A2GI-06 9 135862084 135862084 G A GFI1B Missense_Mutation p.V7M 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 9 137801562 137801562 G A FCN1 3'UTR 0.65 TCGA-EE-A2GI-06 9 139252515 139252515 G A GPSM1 Missense_Mutation p.R624Q 0.51 deleterious(0.02) benign(0.27) TCGA-EE-A2GI-06 9 139252516 139252516 G T GPSM1 Silent p.R624R 0.51 TCGA-EE-A2GI-06 9 139371701 139371701 G A SEC16A Missense_Mutation p.P123S 0.50 tolerated(0.67) possibly_damaging(0.773) TCGA-EE-A2GI-06 9 140139814 140139814 C T FAM166A Missense_Mutation p.G156E 0.59 tolerated(0.14) benign(0.023) TCGA-EE-A2GI-06 9 140267934 140267934 T A EXD3 Missense_Mutation p.I80F 0.43 deleterious(0) benign(0.153) TCGA-EE-A2GI-06 9 140967990 140967990 G A CACNA1B Silent p.L1575L 0.09 TCGA-EE-A2GI-06 9 14770702 14770702 G A FREM1 Missense_Mutation p.R1654C 0.74 deleterious(0) benign(0.094) TCGA-EE-A2GI-06 9 14770703 14770703 G A FREM1 Silent p.S1653S 0.68 TCGA-EE-A2GI-06 9 14859208 14859208 G A FREM1 Nonsense_Mutation p.Q202* 0.44 TCGA-EE-A2GI-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.62 TCGA-EE-A2GI-06 9 21971187 21971187 G A CDKN2A Silent p.A57A 0.65 TCGA-EE-A2GI-06 9 23692542 23692542 G A ELAVL2 3'UTR 0.24 TCGA-EE-A2GI-06 9 2647525 2647525 A G VLDLR Silent p.G585G 0.48 TCGA-EE-A2GI-06 9 32632987 32632987 C A TAF1L Missense_Mutation p.R864M 0.28 deleterious(0) probably_damaging(0.975) TCGA-EE-A2GI-06 9 34622505 34622505 G A ARID3C Missense_Mutation p.P296L 0.36 tolerated(0.06) benign(0.184) TCGA-EE-A2GI-06 9 35065361 35065361 G A VCP Missense_Mutation p.R155C 0.28 deleterious(0.01) probably_damaging(0.941) TCGA-EE-A2GI-06 9 35100991 35100991 G A STOML2 Silent p.L248L 0.34 TCGA-EE-A2GI-06 9 35706001 35706001 G A TLN1 Silent p.V1823V 0.37 TCGA-EE-A2GI-06 9 35812188 35812188 C T SPAG8 5'UTR 0.38 TCGA-EE-A2GI-06 9 35958057 35958057 G A OR2S2 Silent p.F13F 0.38 TCGA-EE-A2GI-06 9 36390535 36390535 G A RNF38 Silent p.L31L 0.35 TCGA-EE-A2GI-06 9 37015113 37015113 T A PAX5 Missense_Mutation p.E97D 0.36 tolerated(0.96) benign(0.001) TCGA-EE-A2GI-06 9 38068598 38068599 - T SHB Frame_Shift_Ins p.T16Dfs*230 0.20 TCGA-EE-A2GI-06 9 3829391 3829391 C T GLIS3 Missense_Mutation p.D859N 0.52 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GI-06 9 38396624 38396624 C T ALDH1B1 Silent p.I293I 0.41 TCGA-EE-A2GI-06 9 38572032 38572032 G A ANKRD18A 3'UTR 0.40 TCGA-EE-A2GI-06 9 77343241 77343241 C T TRPM6 Missense_Mutation p.G1950E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GI-06 9 79936480 79936480 C T VPS13A Missense_Mutation p.S1883F 0.56 tolerated(0.06) benign(0.27) TCGA-EE-A2GI-06 9 86465139 86465139 C T KIF27 Missense_Mutation p.R1144Q 0.56 tolerated(1) benign(0.002) TCGA-EE-A2GI-06 9 86586929 86586929 G A HNRNPK Missense_Mutation p.P274L 0.48 tolerated(0.07) benign(0.006) TCGA-EE-A2GI-06 9 94486784 94486784 G A ROR2 Silent p.I664I 0.50 TCGA-EE-A2GI-06 9 94486827 94486827 C T ROR2 Missense_Mutation p.G650E 0.45 tolerated(0.15) benign(0.186) TCGA-EE-A2GI-06 9 94487000 94487000 G A ROR2 Silent p.F592F 0.69 TCGA-EE-A2GI-06 9 97321385 97321385 C T FBP2 Silent p.V285V 0.53 TCGA-EE-A2GI-06 X 101858321 101858321 G A ARMCX5 Missense_Mutation p.G418R 0.60 tolerated(0.75) benign(0.243) TCGA-EE-A2GI-06 X 103349343 103349343 G A SLC25A53 Nonsense_Mutation p.Q200* 0.78 TCGA-EE-A2GI-06 X 105011267 105011267 C T IL1RAPL2 Silent p.I558I 0.58 TCGA-EE-A2GI-06 X 108673541 108673541 C T GUCY2F Missense_Mutation p.E596K 0.66 tolerated(0.76) benign(0.01) TCGA-EE-A2GI-06 X 111097263 111097263 C T TRPC5 Silent p.R324R 0.88 TCGA-EE-A2GI-06 X 11204449 11204449 C T ARHGAP6 Missense_Mutation p.E394K 0.70 tolerated(0.37) benign(0.04) TCGA-EE-A2GI-06 X 133941576 133941576 C T FAM122C 5'UTR 0.63 TCGA-EE-A2GI-06 X 134482918 134482918 A T ZNF449 Intron 0.87 TCGA-EE-A2GI-06 X 134994548 134994548 G A SAGE1 Missense_Mutation p.E864K 0.75 tolerated(0.34) benign(0.008) TCGA-EE-A2GI-06 X 135430934 135430934 C T GPR112 Missense_Mutation p.S1690F 0.58 tolerated(0.09) benign(0.07) TCGA-EE-A2GI-06 X 13651253 13651253 C T EGFL6 3'UTR 0.65 TCGA-EE-A2GI-06 X 1404810 1404810 C T CSF2RA Silent p.P72P 0.30 TCGA-EE-A2GI-06 X 1424358 1424358 C T CSF2RA Silent p.L389L 0.33 TCGA-EE-A2GI-06 X 149013189 149013189 G A MAGEA8 Missense_Mutation p.G48E 0.79 tolerated(0.07) possibly_damaging(0.904) TCGA-EE-A2GI-06 X 150840952 150840952 G A PASD1 Missense_Mutation p.G579R 0.74 deleterious(0.02) possibly_damaging(0.763) TCGA-EE-A2GI-06 X 150868980 150868980 G A PRRG3 Missense_Mutation p.M57I 0.10 tolerated(0.14) possibly_damaging(0.844) TCGA-EE-A2GI-06 X 151821304 151821304 G A GABRQ Missense_Mutation p.E487K 0.76 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A2GI-06 X 151996294 151996294 A T CETN2 3'UTR 0.71 TCGA-EE-A2GI-06 X 152158808 152158808 G A PNMA5 Silent p.P445P 0.63 TCGA-EE-A2GI-06 X 152821606 152821606 G A ATP2B3 Missense_Mutation p.G720S 0.70 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GI-06 X 154508605 154508605 G A CLIC2 Silent p.L139L 0.59 TCGA-EE-A2GI-06 X 154528438 154528438 A G CLIC2 Silent p.S26S 0.72 TCGA-EE-A2GI-06 X 155003687 155003687 G A SPRY3 Missense_Mutation p.D52N 0.38 tolerated(0.06) benign(0.119) TCGA-EE-A2GI-06 X 17710468 17710468 G A NHS Silent p.R244R 0.75 TCGA-EE-A2GI-06 X 20252888 20252888 A G RPS6KA3 Silent p.I38I 0.70 TCGA-EE-A2GI-06 X 3030424 3030424 G A ARSF Missense_Mutation p.V534M 0.59 tolerated(0.48) benign(0.318) TCGA-EE-A2GI-06 X 3229527 3229527 C T MXRA5 Silent p.V2239V 0.69 TCGA-EE-A2GI-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.61 TCGA-EE-A2GI-06 X 3242170 3242170 G A MXRA5 Missense_Mutation p.S519F 0.50 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GI-06 X 3248158 3248158 G A MXRA5 Missense_Mutation p.R204W 0.67 deleterious(0) benign(0.022) TCGA-EE-A2GI-06 X 48681152 48681152 C T HDAC6 Silent p.I820I 0.67 TCGA-EE-A2GI-06 X 50053951 50053951 G A CCNB3 Missense_Mutation p.E928K 0.56 tolerated(1) benign(0.001) TCGA-EE-A2GI-06 X 52681933 52681933 G A SSX7 Silent p.A57A 0.62 TCGA-EE-A2GI-06 X 54177717 54177717 G A FAM120C Silent p.N373N 0.72 TCGA-EE-A2GI-06 X 54783974 54783974 G A ITIH6 Missense_Mutation p.L845F 0.65 deleterious(0.02) benign(0.12) TCGA-EE-A2GI-06 X 5811248 5811248 G A NLGN4X Silent p.F687F 0.62 TCGA-EE-A2GI-06 X 65413379 65413379 G A HEPH Missense_Mutation p.R477Q 0.57 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GI-06 X 67937433 67937433 A T STARD8 Missense_Mutation p.Q226L 0.70 deleterious(0.04) benign(0.221) TCGA-EE-A2GI-06 X 67937434 67937434 A G STARD8 Silent p.Q226Q 0.70 TCGA-EE-A2GI-06 X 69849514 69849514 C T TEX11 Missense_Mutation p.E534K 0.66 tolerated(0.45) benign(0.012) TCGA-EE-A2GI-06 X 73045103 73045103 C A XIST RNA 0.61 TCGA-EE-A2GI-06 X 73066284 73066284 A G XIST RNA 0.68 TCGA-EE-A2GI-06 X 73070206 73070206 G A XIST RNA 0.72 TCGA-EE-A2GI-06 X 78427485 78427485 C T GPR174 Silent p.T327T 0.60 TCGA-EE-A2GI-06 X 85212875 85212875 G A CHM Missense_Mutation p.P309S 0.69 tolerated(0.19) probably_damaging(0.995) TCGA-EE-A2GI-06 X 92927395 92927395 A G NAP1L3 Silent p.P303P 0.57 TCGA-EE-A2GI-06 X 99605699 99605699 C T PCDH19 Missense_Mutation p.E874K 0.74 tolerated(0.73) benign(0.17) TCGA-EE-A2GI-06 X 99942167 99942167 C T SYTL4 Missense_Mutation p.A361T 0.73 tolerated(0.2) benign(0.001) TCGA-EE-A2GI-06 X 99942168 99942168 A T SYTL4 Silent p.I360I 0.71 TCGA-EE-A2GI-06 X 99944877 99944877 G A SYTL4 Silent p.S296S 0.63 TCGA-EE-A2GI-06 Y 22921930 22921930 C T RPS4Y2 Silent p.F86F 0.62 TCGA-EE-A2GJ-06 10 102250508 102250508 G A SEC31B Missense_Mutation p.P869S 0.48 tolerated(0.17) benign(0.002) TCGA-EE-A2GJ-06 10 102738691 102738691 G A SEMA4G Silent p.T243T 0.61 TCGA-EE-A2GJ-06 10 103789475 103789475 G A C10orf76 Missense_Mutation p.H112Y 0.49 tolerated(1) benign(0) TCGA-EE-A2GJ-06 10 103912093 103912093 G A NOLC1 5'UTR 0.51 TCGA-EE-A2GJ-06 10 105815669 105815669 C T COL17A1 Missense_Mutation p.E520K 0.47 unknown(0) TCGA-EE-A2GJ-06 10 112771598 112771598 C T SHOC2 3'UTR 0.64 TCGA-EE-A2GJ-06 10 115388709 115388709 T G NRAP Missense_Mutation p.E704D 0.52 deleterious(0.01) possibly_damaging(0.607) TCGA-EE-A2GJ-06 10 115389533 115389533 C T NRAP Silent p.K618K 0.37 TCGA-EE-A2GJ-06 10 115804217 115804217 T G ADRB1 Missense_Mutation p.L109R 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2GJ-06 10 116049073 116049073 C T VWA2 Silent p.A649A 0.50 TCGA-EE-A2GJ-06 10 117704261 117704261 C T ATRNL1 Missense_Mutation p.L1371F 0.56 tolerated(0.2) benign(0.276) TCGA-EE-A2GJ-06 10 119044225 119044225 C T PDZD8 Silent p.S673S 0.47 TCGA-EE-A2GJ-06 10 120816534 120816534 G A EIF3A Missense_Mutation p.P666S 0.63 tolerated(0.34) unknown(0) TCGA-EE-A2GJ-06 10 124248988 124248988 T C HTRA1 Missense_Mutation p.I208T 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 10 124390686 124390686 C T DMBT1 Silent p.L1950L 0.57 TCGA-EE-A2GJ-06 10 124399765 124399765 G A DMBT1 Silent p.V2255V 0.42 TCGA-EE-A2GJ-06 10 124595698 124595698 C T CUZD1 Missense_Mutation p.R329K 0.44 tolerated(1) benign(0.001) TCGA-EE-A2GJ-06 10 129868693 129868693 C T PTPRE Silent p.I424I 0.16 TCGA-EE-A2GJ-06 10 135122932 135122932 G A ZNF511 Silent p.V64V 0.47 TCGA-EE-A2GJ-06 10 14950843 14950843 C G DCLRE1C Missense_Mutation p.S548T 0.49 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-EE-A2GJ-06 10 24822051 24822051 C T KIAA1217 Missense_Mutation p.P1100L 0.58 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2GJ-06 10 28225792 28225792 T G ARMC4 Missense_Mutation p.E705D 0.51 tolerated(0.09) benign(0.346) TCGA-EE-A2GJ-06 10 29840032 29840032 C T SVIL Silent p.R107R 0.48 TCGA-EE-A2GJ-06 10 30315548 30315548 C G KIAA1462 Missense_Mutation p.D1177H 0.49 deleterious(0.04) possibly_damaging(0.735) TCGA-EE-A2GJ-06 10 33515180 33515180 C T NRP1 Missense_Mutation p.G340E 0.39 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A2GJ-06 10 33515181 33515181 C T NRP1 Missense_Mutation p.G340R 0.39 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GJ-06 10 43318679 43318679 C T BMS1 Silent p.F1082F 0.48 TCGA-EE-A2GJ-06 10 47087321 47087321 C T NPY4R Silent p.L180L 0.42 TCGA-EE-A2GJ-06 10 50859976 50859976 G A CHAT Missense_Mutation p.G520R 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 10 5541038 5541038 T G CALML5 Missense_Mutation p.M122L 0.47 deleterious(0.03) benign(0.149) TCGA-EE-A2GJ-06 10 5791322 5791322 C T FAM208B Silent p.L1980L 0.53 TCGA-EE-A2GJ-06 10 7217970 7217970 G A SFMBT2 Missense_Mutation p.H656Y 0.36 tolerated(0.07) benign(0.006) TCGA-EE-A2GJ-06 10 72500919 72500919 G A ADAMTS14 Splice_Site p.X645_splice 0.43 TCGA-EE-A2GJ-06 10 73491806 73491806 G A CDH23 Missense_Mutation p.E1265K 0.32 tolerated(0.64) probably_damaging(0.949) TCGA-EE-A2GJ-06 10 74684368 74684368 G A OIT3 Missense_Mutation p.D445N 0.57 tolerated(0.43) benign(0.396) TCGA-EE-A2GJ-06 10 7820848 7820848 T C KIN Missense_Mutation p.K171E 0.46 tolerated(0.47) possibly_damaging(0.825) TCGA-EE-A2GJ-06 10 8007463 8007463 C T TAF3 Missense_Mutation p.P664S 0.45 tolerated_low_confidence(0.06) probably_damaging(0.968) TCGA-EE-A2GJ-06 10 8115874 8115874 C T GATA3 Missense_Mutation p.S408L 0.51 tolerated(0.37) benign(0.386) TCGA-EE-A2GJ-06 10 88419807 88419807 C T OPN4 Missense_Mutation p.A330V 0.51 deleterious(0.01) benign(0.162) TCGA-EE-A2GJ-06 10 93773459 93773459 C T BTAF1 Silent p.F1449F 0.41 TCGA-EE-A2GJ-06 10 95791085 95791085 C T PLCE1 Silent p.I94I 0.51 TCGA-EE-A2GJ-06 10 96534882 96534882 G A CYP2C19 Missense_Mutation p.G79E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 10 98192651 98192651 G A TLL2 Missense_Mutation p.P145S 0.42 tolerated(1) benign(0) TCGA-EE-A2GJ-06 10 98802661 98802661 C T SLIT1 Missense_Mutation p.E721K 0.47 tolerated(0.1) benign(0.427) TCGA-EE-A2GJ-06 10 98802662 98802662 C T SLIT1 Silent p.E720E 0.47 TCGA-EE-A2GJ-06 11 100170010 100170010 C T CNTN5 Silent p.F834F 0.25 TCGA-EE-A2GJ-06 11 100912815 100912815 C T PGR Missense_Mutation p.R836Q 0.39 deleterious(0.01) benign(0.105) TCGA-EE-A2GJ-06 11 1027319 1027319 C T MUC6 Missense_Mutation p.G727D 0.34 unknown(0) TCGA-EE-A2GJ-06 11 102736603 102736603 G A MMP12 RNA 0.26 TCGA-EE-A2GJ-06 11 103039681 103039681 G T DYNC2H1 Nonsense_Mutation p.E1654* 0.41 TCGA-EE-A2GJ-06 11 103173892 103173892 C T DYNC2H1 Silent p.P3729P 0.43 TCGA-EE-A2GJ-06 11 10506423 10506423 C T AMPD3 Missense_Mutation p.P225S 0.40 tolerated(0.49) benign(0.013) TCGA-EE-A2GJ-06 11 107224410 107224410 G A CWF19L2 Missense_Mutation p.S642F 0.50 deleterious(0) possibly_damaging(0.701) TCGA-EE-A2GJ-06 11 111250001 111250001 G A POU2AF1 5'UTR 0.45 TCGA-EE-A2GJ-06 11 113102975 113102975 C T NCAM1 Missense_Mutation p.P491S 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 114027098 114027098 C T ZBTB16 Silent p.L436L 0.57 TCGA-EE-A2GJ-06 11 114121187 114121187 C T ZBTB16 Silent p.S644S 0.39 TCGA-EE-A2GJ-06 11 116693953 116693953 C T APOA4 5'UTR 0.47 TCGA-EE-A2GJ-06 11 117152757 117152757 C T RNF214 Nonsense_Mutation p.Q495* 0.55 TCGA-EE-A2GJ-06 11 117651428 117651428 C T DSCAML1 Silent p.P108P 0.45 TCGA-EE-A2GJ-06 11 118074226 118074226 C T AMICA1 Missense_Mutation p.G230E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 120099837 120099837 C T OAF Missense_Mutation p.P270S 0.47 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-EE-A2GJ-06 11 123624355 123624355 C T OR6X1 Missense_Mutation p.R291K 0.44 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2GJ-06 11 124121126 124121126 C T OR8G1 Missense_Mutation p.S235F 0.44 tolerated_low_confidence(0.13) benign(0.011) TCGA-EE-A2GJ-06 11 124294506 124294506 C T OR8B4 Missense_Mutation p.E88K 0.55 tolerated_low_confidence(0.95) benign(0.001) TCGA-EE-A2GJ-06 11 124440898 124440898 G A OR8A1 Missense_Mutation p.E312K 0.20 deleterious(0.01) benign(0.018) TCGA-EE-A2GJ-06 11 124619748 124619748 G A VSIG2 Missense_Mutation p.P148S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 1267455 1267455 G A MUC5B Silent p.T3115T 0.27 TCGA-EE-A2GJ-06 11 128850516 128850516 G A ARHGAP32 Silent p.I622I 0.59 TCGA-EE-A2GJ-06 11 129306867 129306867 C T BARX2 Missense_Mutation p.R137C 0.53 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 11 16823227 16823227 G A PLEKHA7 Silent p.S765S 0.26 TCGA-EE-A2GJ-06 11 17482080 17482080 C T ABCC8 Silent p.G322G 0.27 TCGA-EE-A2GJ-06 11 18956018 18956018 G A MRGPRX1 Missense_Mutation p.S105F 0.15 tolerated(0.13) benign(0.013) TCGA-EE-A2GJ-06 11 18956201 18956201 C T MRGPRX1 Missense_Mutation p.G44E 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2GJ-06 11 19197516 19197516 A C ZDHHC13 3'UTR 0.28 TCGA-EE-A2GJ-06 11 20622786 20622786 G A SLC6A5 Missense_Mutation p.E39K 0.19 deleterious_low_confidence(0.03) benign(0.073) TCGA-EE-A2GJ-06 11 22242716 22242716 C T ANO5 Missense_Mutation p.S85F 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GJ-06 11 22747923 22747923 C T GAS2 Missense_Mutation p.S118F 0.26 tolerated(0.7) benign(0.195) TCGA-EE-A2GJ-06 11 2608822 2608822 C T KCNQ1 Missense_Mutation p.A384V 0.28 tolerated(0.12) benign(0.057) TCGA-EE-A2GJ-06 11 32410596 32410596 G A WT1 3'UTR 0.22 TCGA-EE-A2GJ-06 11 34473726 34473726 C T CAT Missense_Mutation p.P151L 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GJ-06 11 36615272 36615272 C T RAG2 Silent p.G149G 0.28 TCGA-EE-A2GJ-06 11 40136952 40136952 A T LRRC4C Missense_Mutation p.H297Q 0.32 deleterious(0.02) benign(0.269) TCGA-EE-A2GJ-06 11 43348116 43348116 C T API5 Silent p.L270L 0.25 TCGA-EE-A2GJ-06 11 4389397 4389397 C T OR52B4 Silent p.G43G 0.32 TCGA-EE-A2GJ-06 11 4411334 4411334 G A TRIM21 Silent p.F102F 0.44 TCGA-EE-A2GJ-06 11 44939538 44939538 C T TSPAN18 Silent p.L92L 0.17 TCGA-EE-A2GJ-06 11 4566561 4566561 C T OR52M1 Silent p.I47I 0.30 TCGA-EE-A2GJ-06 11 4616183 4616183 G A OR52I1 Silent p.L305L 0.26 TCGA-EE-A2GJ-06 11 46564444 46564444 G A AMBRA1 Nonsense_Mutation p.Q285* 0.32 TCGA-EE-A2GJ-06 11 46568772 46568772 G A AMBRA1 Missense_Mutation p.S90F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 11 46702856 46702856 T C ARHGAP1 Missense_Mutation p.K175E 0.25 deleterious(0) possibly_damaging(0.835) TCGA-EE-A2GJ-06 11 4673853 4673853 C T OR51E1 Missense_Mutation p.P33S 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-EE-A2GJ-06 11 46916348 46916348 G A LRP4 Silent p.F444F 0.31 TCGA-EE-A2GJ-06 11 46916738 46916738 G A LRP4 Missense_Mutation p.R430W 0.31 deleterious(0.02) possibly_damaging(0.654) TCGA-EE-A2GJ-06 11 46917529 46917529 A C LRP4 Silent p.G363G 0.19 TCGA-EE-A2GJ-06 11 47282910 47282910 C T NR1H3 Silent p.L206L 0.50 TCGA-EE-A2GJ-06 11 47330880 47330880 C T MADD Missense_Mutation p.A1327V 0.35 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A2GJ-06 11 47353667 47353667 T C MYBPC3 Missense_Mutation p.N1257S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 11 48266730 48266730 C T OR4X2 Silent p.F25F 0.38 TCGA-EE-A2GJ-06 11 48266970 48266970 C T OR4X2 Silent p.F105F 0.32 TCGA-EE-A2GJ-06 11 48346626 48346626 A G OR4C3 Missense_Mutation p.N45S 0.26 tolerated(0.1) benign(0.117) TCGA-EE-A2GJ-06 11 48346654 48346654 G A OR4C3 Silent p.V54V 0.20 TCGA-EE-A2GJ-06 11 48347299 48347299 C T OR4C3 Silent p.F269F 0.23 TCGA-EE-A2GJ-06 11 4903722 4903722 G A OR51T1 Missense_Mutation p.S225N 0.31 tolerated(0.18) benign(0.05) TCGA-EE-A2GJ-06 11 49175882 49175882 C T FOLH1 Missense_Mutation p.D596N 0.24 tolerated(0.59) benign(0.01) TCGA-EE-A2GJ-06 11 4945490 4945490 C T OR51G1 Missense_Mutation p.G27D 0.29 tolerated(0.44) benign(0.157) TCGA-EE-A2GJ-06 11 5021040 5021040 C T OR51L1 Silent p.I276I 0.31 TCGA-EE-A2GJ-06 11 51411660 51411660 G A OR4A5 Missense_Mutation p.L246F 0.26 tolerated_low_confidence(0.13) possibly_damaging(0.548) TCGA-EE-A2GJ-06 11 51515538 51515538 G A OR4C46 Missense_Mutation p.G86E 0.29 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GJ-06 11 5246757 5246757 C T HBB 3'UTR 0.29 TCGA-EE-A2GJ-06 11 5322301 5322301 C T OR51B4 Silent p.K292K 0.17 TCGA-EE-A2GJ-06 11 5344688 5344688 G A OR51B2 Silent p.L280L 0.31 TCGA-EE-A2GJ-06 11 5344769 5344769 C T OR51B2 Silent p.V253V 0.30 TCGA-EE-A2GJ-06 11 5344895 5344895 G A OR51B2 Silent p.I211I 0.32 TCGA-EE-A2GJ-06 11 5363817 5363817 C T OR51B5 Silent p.%3D 0.28 TCGA-EE-A2GJ-06 11 5444253 5444253 C T OR51Q1 Missense_Mutation p.H275Y 0.33 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GJ-06 11 5474840 5474840 G A OR51I2 Missense_Mutation p.G41E 0.32 deleterious(0) possibly_damaging(0.543) TCGA-EE-A2GJ-06 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.38 TCGA-EE-A2GJ-06 11 55587477 55587477 C T OR5D18 Silent p.F124F 0.24 TCGA-EE-A2GJ-06 11 55595297 55595297 G T OR5L2 Silent p.L201L 0.32 TCGA-EE-A2GJ-06 11 56310405 56310405 T G OR5M11 Missense_Mutation p.E110A 0.26 deleterious(0) possibly_damaging(0.493) TCGA-EE-A2GJ-06 11 56409412 56409412 C T OR5AP2 Missense_Mutation p.M168I 0.22 tolerated(0.27) benign(0.013) TCGA-EE-A2GJ-06 11 56757235 56757235 C T OR5AK2 Missense_Mutation p.P283S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 57115696 57115696 G A P2RX3 Silent p.E148E 0.32 TCGA-EE-A2GJ-06 11 57369508 57369508 G A SERPING1 Missense_Mutation p.G184E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 58125748 58125748 G A OR5B17 Silent p.S265S 0.32 TCGA-EE-A2GJ-06 11 58190410 58190410 C T OR5B2 Missense_Mutation p.E109K 0.27 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-EE-A2GJ-06 11 58206915 58206915 G A OR5B12 Missense_Mutation p.S237F 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.684) TCGA-EE-A2GJ-06 11 58477521 58477521 G A GLYAT Silent p.T203T 0.27 TCGA-EE-A2GJ-06 11 5862440 5862440 G A OR52E6 Missense_Mutation p.P230S 0.32 deleterious(0.05) benign(0.153) TCGA-EE-A2GJ-06 11 59271645 59271645 G A OR4D11 Missense_Mutation p.M199I 0.33 tolerated(0.16) benign(0.068) TCGA-EE-A2GJ-06 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.37 TCGA-EE-A2GJ-06 11 59415331 59415331 C G PATL1 Missense_Mutation p.V597L 0.24 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A2GJ-06 11 60105285 60105285 C T MS4A6E Silent p.V73V 0.26 TCGA-EE-A2GJ-06 11 6023588 6023588 G A OR56A4 Missense_Mutation p.S264F 0.39 tolerated(0.48) possibly_damaging(0.813) TCGA-EE-A2GJ-06 11 619372 619372 C T CDHR5 Missense_Mutation p.V438M 0.29 deleterious(0.03) possibly_damaging(0.663) TCGA-EE-A2GJ-06 11 62037687 62037687 C T SCGB2A2 5'UTR 0.30 TCGA-EE-A2GJ-06 11 62622506 62622506 T C SLC3A2 5'Flank 0.26 TCGA-EE-A2GJ-06 11 62933731 62933731 C T SLC22A25 Splice_Site p.X357_splice 0.34 TCGA-EE-A2GJ-06 11 62951228 62951228 C T SLC22A25 Missense_Mutation p.E298K 0.37 deleterious(0.04) benign(0.248) TCGA-EE-A2GJ-06 11 63057749 63057749 G C SLC22A10 Missense_Mutation p.E38Q 0.23 deleterious(0.01) possibly_damaging(0.666) TCGA-EE-A2GJ-06 11 63065199 63065199 G A SLC22A10 Missense_Mutation p.R277K 0.43 tolerated(0.2) possibly_damaging(0.589) TCGA-EE-A2GJ-06 11 63141470 63141470 C T SLC22A9 Nonsense_Mutation p.R256* 0.41 TCGA-EE-A2GJ-06 11 63143178 63143178 G A SLC22A9 Missense_Mutation p.E298K 0.26 deleterious(0.04) benign(0.128) TCGA-EE-A2GJ-06 11 64785862 64785862 C T ARL2 Missense_Mutation p.T31I 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 11 64897317 64897317 C T SYVN1 Silent p.E493E 0.34 TCGA-EE-A2GJ-06 11 6519925 6519925 C T DNHD1 Silent p.P160P 0.31 TCGA-EE-A2GJ-06 11 66243537 66243537 C T PELI3 Missense_Mutation p.H437Y 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GJ-06 11 66393997 66393997 C T RBM14 Missense_Mutation p.S623L 0.37 deleterious(0) unknown(0) TCGA-EE-A2GJ-06 11 6977185 6977185 C T ZNF215 Missense_Mutation p.P326L 0.31 deleterious(0.02) benign(0.004) TCGA-EE-A2GJ-06 11 71727571 71727571 G A NUMA1 Silent p.C375C 0.28 TCGA-EE-A2GJ-06 11 72295960 72295960 C T PDE2A Missense_Mutation p.E439K 0.33 deleterious(0.05) possibly_damaging(0.813) TCGA-EE-A2GJ-06 11 75319354 75319354 C T MAP6 Missense_Mutation p.A307T 0.26 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GJ-06 11 76370558 76370558 G A LRRC32 3'UTR 0.29 TCGA-EE-A2GJ-06 11 7721858 7721858 C T OVCH2 Missense_Mutation p.E296K 0.30 tolerated(0.8) benign(0.013) TCGA-EE-A2GJ-06 11 77635701 77635701 T A INTS4 Intron 0.31 TCGA-EE-A2GJ-06 11 78443603 78443603 C T TENM4 Missense_Mutation p.G966S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 11 7960951 7960951 C T OR10A3 Silent p.L39L 0.45 TCGA-EE-A2GJ-06 11 82877030 82877030 C T PCF11 Missense_Mutation p.S364L 0.38 tolerated(0.17) benign(0) TCGA-EE-A2GJ-06 11 84245714 84245714 C T DLG2 Missense_Mutation p.E140K 0.33 tolerated_low_confidence(0.21) benign(0.167) TCGA-EE-A2GJ-06 11 85436401 85436401 G A SYTL2 Missense_Mutation p.P367S 0.30 tolerated(1) benign(0.001) TCGA-EE-A2GJ-06 11 85630604 85630604 G A CCDC83 3'UTR 0.35 TCGA-EE-A2GJ-06 11 86086284 86086284 G A CCDC81 Missense_Mutation p.E27K 0.31 deleterious(0.03) benign(0.222) TCGA-EE-A2GJ-06 11 8752657 8752657 G A ST5 Silent p.H60H 0.36 TCGA-EE-A2GJ-06 11 89424676 89424676 C T FOLH1B RNA 0.35 TCGA-EE-A2GJ-06 11 89537382 89537382 G A TRIM49 Silent p.L86L 0.28 TCGA-EE-A2GJ-06 11 89774476 89774476 G A TRIM49C Missense_Mutation p.G373R 0.19 tolerated(0.24) possibly_damaging(0.77) TCGA-EE-A2GJ-06 11 89916124 89916124 C T NAALAD2 Silent p.L661L 0.29 TCGA-EE-A2GJ-06 11 92539573 92539573 A T FAT3 Missense_Mutation p.I3047F 0.16 benign(0.094) TCGA-EE-A2GJ-06 11 92577503 92577503 C T FAT3 Missense_Mutation p.S3657F 0.33 probably_damaging(0.943) TCGA-EE-A2GJ-06 11 93464361 93464361 T G KIAA1731 3'Flank 0.38 TCGA-EE-A2GJ-06 12 100813680 100813680 G A SLC17A8 Missense_Mutation p.E505K 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 12 101699781 101699781 C T UTP20 Nonsense_Mutation p.Q624* 0.33 TCGA-EE-A2GJ-06 12 104056714 104056714 C T STAB2 Missense_Mutation p.P654S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 12 104060106 104060106 G A STAB2 Missense_Mutation p.R687K 0.30 tolerated(1) benign(0) TCGA-EE-A2GJ-06 12 104332163 104332163 G A HSP90B1 Missense_Mutation p.E301K 0.24 tolerated(0.31) benign(0.021) TCGA-EE-A2GJ-06 12 107937824 107937824 C T BTBD11 Silent p.A466A 0.19 TCGA-EE-A2GJ-06 12 109928861 109928861 C T UBE3B Silent p.T214T 0.44 TCGA-EE-A2GJ-06 12 113306428 113306428 G A RPH3A Intron 0.23 TCGA-EE-A2GJ-06 12 113334571 113334571 G A RPH3A Missense_Mutation p.V691M 0.24 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-EE-A2GJ-06 12 11461474 11461474 C T PRB4 Missense_Mutation p.G148E 0.26 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GJ-06 12 11546774 11546774 C T PRB2 Missense_Mutation p.G80R 0.25 tolerated(0.07) unknown(0) TCGA-EE-A2GJ-06 12 117728169 117728169 G A NOS1 Silent p.F305F 0.32 TCGA-EE-A2GJ-06 12 117768797 117768797 C T NOS1 Silent p.G26G 0.26 TCGA-EE-A2GJ-06 12 119866561 119866561 G A CCDC60 Missense_Mutation p.R55Q 0.26 tolerated(0.1) probably_damaging(0.917) TCGA-EE-A2GJ-06 12 119909856 119909856 G A CCDC60 Silent p.E76E 0.34 TCGA-EE-A2GJ-06 12 119957997 119957997 G A CCDC60 Missense_Mutation p.S347N 0.31 tolerated(0.08) possibly_damaging(0.888) TCGA-EE-A2GJ-06 12 119957998 119957998 G A CCDC60 Splice_Site p.X347_splice 0.30 TCGA-EE-A2GJ-06 12 120306862 120306862 A C CIT Splice_Site p.X80_splice 0.29 TCGA-EE-A2GJ-06 12 121469308 121469308 G A OASL Silent p.F198F 0.33 TCGA-EE-A2GJ-06 12 121878938 121878938 G A KDM2B Missense_Mutation p.S1128F 0.38 deleterious(0) possibly_damaging(0.553) TCGA-EE-A2GJ-06 12 122616872 122616872 C T MLXIP Missense_Mutation p.S345F 0.32 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2GJ-06 12 122865055 122865055 A G CLIP1 5'Flank 0.19 TCGA-EE-A2GJ-06 12 123519106 123519106 G A PITPNM2 Missense_Mutation p.P11L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 12 124350589 124350589 G A DNAH10 Nonsense_Mutation p.W2261* 0.38 TCGA-EE-A2GJ-06 12 124979719 124979719 G T NCOR2 Missense_Mutation p.P27T 0.40 unknown(0) TCGA-EE-A2GJ-06 12 124979720 124979720 G A NCOR2 Silent p.Y26Y 0.38 TCGA-EE-A2GJ-06 12 125834401 125834401 T G TMEM132B Silent p.L152L 0.28 TCGA-EE-A2GJ-06 12 129559291 129559291 C T TMEM132D Missense_Mutation p.R810K 0.40 tolerated(0.97) benign(0.002) TCGA-EE-A2GJ-06 12 13061552 13061552 C T GPRC5A Silent p.V123V 0.31 TCGA-EE-A2GJ-06 12 130898837 130898837 C T RIMBP2 Missense_Mutation p.D829N 0.37 tolerated(0.11) benign(0.009) TCGA-EE-A2GJ-06 12 132522320 132522320 C T EP400 Silent p.S2015S 0.17 TCGA-EE-A2GJ-06 12 132636693 132636693 C T NOC4L Missense_Mutation p.S461F 0.39 deleterious(0.01) possibly_damaging(0.62) TCGA-EE-A2GJ-06 12 14813932 14813932 G A GUCY2C Silent p.V449V 0.30 TCGA-EE-A2GJ-06 12 14993629 14993629 G A ART4 Silent p.T201T 0.35 TCGA-EE-A2GJ-06 12 15637040 15637040 G A PTPRO Missense_Mutation p.E70K 0.27 tolerated_low_confidence(0.08) benign(0.036) TCGA-EE-A2GJ-06 12 18691241 18691241 G A PIK3C2G Missense_Mutation p.E1118K 0.33 tolerated(0.23) probably_damaging(0.955) TCGA-EE-A2GJ-06 12 20766429 20766429 G A PDE3A Missense_Mutation p.G355D 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GJ-06 12 21960391 21960391 C T ABCC9 Silent p.G1446G 0.25 TCGA-EE-A2GJ-06 12 2693758 2693758 G A CACNA1C Missense_Mutation p.E772K 0.27 tolerated(0.1) benign(0.152) TCGA-EE-A2GJ-06 12 2721185 2721185 C T CACNA1C Intron 0.41 TCGA-EE-A2GJ-06 12 27235198 27235198 T G C12orf71 Missense_Mutation p.Q73H 0.39 tolerated(0.08) possibly_damaging(0.568) TCGA-EE-A2GJ-06 12 31566412 31566412 G A DENND5B Missense_Mutation p.S880F 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GJ-06 12 32793469 32793469 C T FGD4 3'UTR 0.27 TCGA-EE-A2GJ-06 12 32945356 32945356 C T PKP2 3'UTR 0.40 TCGA-EE-A2GJ-06 12 32955454 32955454 C T PKP2 Missense_Mutation p.E728K 0.29 deleterious(0.01) possibly_damaging(0.83) TCGA-EE-A2GJ-06 12 32975492 32975492 G A PKP2 Missense_Mutation p.S627F 0.37 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2GJ-06 12 32996245 32996245 G A PKP2 Missense_Mutation p.H461Y 0.28 tolerated_low_confidence(0.28) benign(0.001) TCGA-EE-A2GJ-06 12 3678727 3678727 C T PRMT8 Missense_Mutation p.H237Y 0.34 tolerated(0.08) benign(0.001) TCGA-EE-A2GJ-06 12 3806072 3806072 G A EFCAB4B Missense_Mutation p.P32S 0.31 tolerated_low_confidence(0.29) benign(0.006) TCGA-EE-A2GJ-06 12 40114937 40114937 G A C12orf40 Missense_Mutation p.D615N 0.26 tolerated(0.19) benign(0.035) TCGA-EE-A2GJ-06 12 40643657 40643657 G A LRRK2 Missense_Mutation p.E290K 0.38 tolerated(0.57) benign(0.009) TCGA-EE-A2GJ-06 12 43860460 43860460 G A ADAMTS20 Silent p.F454F 0.31 TCGA-EE-A2GJ-06 12 43860504 43860504 G A ADAMTS20 Missense_Mutation p.P440S 0.34 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GJ-06 12 46230605 46230605 G A ARID2 Missense_Mutation p.R285Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 12 46244079 46244079 C T ARID2 Nonsense_Mutation p.Q725* 0.31 TCGA-EE-A2GJ-06 12 46598324 46598324 G A SLC38A1 Silent p.F232F 0.33 TCGA-EE-A2GJ-06 12 47472504 47472504 C T AMIGO2 Silent p.K94K 0.30 TCGA-EE-A2GJ-06 12 47629803 47629803 G A PCED1B Silent p.Q319Q 0.31 TCGA-EE-A2GJ-06 12 48375178 48375178 C T COL2A1 Missense_Mutation p.G804E 0.22 unknown(0) TCGA-EE-A2GJ-06 12 48375179 48375179 C T COL2A1 Missense_Mutation p.G804R 0.23 unknown(0) TCGA-EE-A2GJ-06 12 48723794 48723794 G A H1FNT Silent p.R240R 0.56 TCGA-EE-A2GJ-06 12 4873136 4873136 G A GALNT8 Missense_Mutation p.E506K 0.26 tolerated(0.53) benign(0.015) TCGA-EE-A2GJ-06 12 49445153 49445153 G A KMT2D Silent p.S771S 0.31 TCGA-EE-A2GJ-06 12 5021334 5021334 C T KCNA1 Missense_Mutation p.P264S 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 12 5021335 5021335 C T KCNA1 Missense_Mutation p.P264L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 12 5021486 5021486 C T KCNA1 Silent p.I314I 0.36 TCGA-EE-A2GJ-06 12 50860828 50860828 T C LARP4 Silent p.S490S 0.33 TCGA-EE-A2GJ-06 12 51512486 51512486 G A TFCP2 Silent p.I64I 0.29 TCGA-EE-A2GJ-06 12 51695812 51695812 C T BIN2 Missense_Mutation p.E134K 0.25 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2GJ-06 12 52910428 52910428 C T KRT5 Missense_Mutation p.E478K 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GJ-06 12 53045732 53045732 G A KRT2 Silent p.G65G 0.31 TCGA-EE-A2GJ-06 12 53073632 53073632 C T KRT1 Silent p.V167V 0.31 TCGA-EE-A2GJ-06 12 53165697 53165697 C T KRT76 Missense_Mutation p.M407I 0.30 tolerated(0.06) possibly_damaging(0.688) TCGA-EE-A2GJ-06 12 53238393 53238393 C T KRT78 Missense_Mutation p.E291K 0.15 deleterious(0.03) benign(0.328) TCGA-EE-A2GJ-06 12 55360174 55360174 G A TESPA1 Silent p.S115S 0.33 TCGA-EE-A2GJ-06 12 55758919 55758919 G A OR6C75 Missense_Mutation p.D9N 0.34 deleterious_low_confidence(0.03) benign(0.002) TCGA-EE-A2GJ-06 12 55945170 55945170 C T OR6C4 Nonsense_Mutation p.Q54* 0.27 TCGA-EE-A2GJ-06 12 56737284 56737284 G A STAT2 Silent p.I815I 0.23 TCGA-EE-A2GJ-06 12 57591968 57591968 C T LRP1 Silent p.P3104P 0.48 TCGA-EE-A2GJ-06 12 57871368 57871368 G A ARHGAP9 Silent p.C210C 0.39 TCGA-EE-A2GJ-06 12 6427944 6427944 C T PLEKHG6 Missense_Mutation p.L437F 0.35 tolerated(0.17) benign(0.135) TCGA-EE-A2GJ-06 12 6428092 6428092 G A PLEKHG6 Intron 0.21 TCGA-EE-A2GJ-06 12 65088588 65088588 T C RASSF3 Silent p.L205L 0.32 TCGA-EE-A2GJ-06 12 65847548 65847548 C T MSRB3 Silent p.I118I 0.27 TCGA-EE-A2GJ-06 12 68642506 68642506 C T IL22 3'UTR 0.39 TCGA-EE-A2GJ-06 12 69136223 69136223 G A NUP107 Missense_Mutation p.G920E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 12 69136224 69136224 G A NUP107 Silent p.G920G 0.32 TCGA-EE-A2GJ-06 12 69140140 69140140 C T SLC35E3 5'UTR 0.35 TCGA-EE-A2GJ-06 12 70824331 70824331 C T KCNMB4 Silent p.P177P 0.33 TCGA-EE-A2GJ-06 12 70949780 70949780 C T PTPRB Silent p.L1621L 0.28 TCGA-EE-A2GJ-06 12 70953405 70953405 C T PTPRB Splice_Site p.X1478_splice 0.30 TCGA-EE-A2GJ-06 12 7249655 7249655 C T C1RL Missense_Mutation p.G266S 0.38 deleterious(0.01) possibly_damaging(0.699) TCGA-EE-A2GJ-06 12 72969148 72969148 C T TRHDE Nonsense_Mutation p.Q704* 0.32 TCGA-EE-A2GJ-06 12 73012732 73012732 G A TRHDE Missense_Mutation p.D750N 0.26 deleterious(0.01) benign(0.171) TCGA-EE-A2GJ-06 12 7520753 7520753 A G CD163L1 Silent p.L1371L 0.28 TCGA-EE-A2GJ-06 12 7520754 7520754 A C CD163L1 Missense_Mutation p.L1371R 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2GJ-06 12 75445023 75445023 G A KCNC2 Silent p.F254F 0.39 TCGA-EE-A2GJ-06 12 7647853 7647853 C T CD163 Missense_Mutation p.G415E 0.27 tolerated(0.09) possibly_damaging(0.458) TCGA-EE-A2GJ-06 12 80729820 80729820 C T OTOGL Silent p.S1491S 0.39 TCGA-EE-A2GJ-06 12 81205335 81205335 C T LIN7A Missense_Mutation p.R204Q 0.45 deleterious(0.02) benign(0.045) TCGA-EE-A2GJ-06 12 88900085 88900085 T - KITLG Intron 0.21 TCGA-EE-A2GJ-06 12 91449866 91449866 C T KERA Missense_Mutation p.E65K 0.31 tolerated(0.83) benign(0.01) TCGA-EE-A2GJ-06 12 9230360 9230360 G A A2M Silent p.S1071S 0.41 TCGA-EE-A2GJ-06 12 97051735 97051735 C T C12orf55 Missense_Mutation p.L1726F 0.25 deleterious(0.05) benign(0.424) TCGA-EE-A2GJ-06 12 97158896 97158896 G A C12orf55 Silent p.K2727K 0.29 TCGA-EE-A2GJ-06 13 110845251 110845251 C T COL4A1 Missense_Mutation p.G464E 0.48 benign(0.012) TCGA-EE-A2GJ-06 13 114751155 114751155 A G RASA3 Missense_Mutation p.V787A 0.55 tolerated(0.49) probably_damaging(0.986) TCGA-EE-A2GJ-06 13 20797125 20797125 C T GJB6 Nonsense_Mutation p.W165* 0.43 TCGA-EE-A2GJ-06 13 22275367 22275367 C T FGF9 Silent p.F140F 0.79 TCGA-EE-A2GJ-06 13 23914341 23914341 A G SACS Missense_Mutation p.L1225S 0.42 probably_damaging(0.997) TCGA-EE-A2GJ-06 13 25349023 25349023 G A RNF17 Missense_Mutation p.E100K 0.36 deleterious(0.04) benign(0.017) TCGA-EE-A2GJ-06 13 27254258 27254258 G A WASF3 Intron 0.67 TCGA-EE-A2GJ-06 13 27333041 27333041 G A GPR12 Silent p.I308I 0.63 TCGA-EE-A2GJ-06 13 28498646 28498646 C T PDX1 Silent p.V220V 0.56 TCGA-EE-A2GJ-06 13 28840996 28840996 G A PAN3 Missense_Mutation p.C519Y 0.48 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 13 29001438 29001438 C T FLT1 Missense_Mutation p.E432K 0.48 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GJ-06 13 37016859 37016859 C T CCNA1 3'UTR 0.39 TCGA-EE-A2GJ-06 13 39262895 39262895 G A FREM2 Missense_Mutation p.D472N 0.46 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GJ-06 13 39550716 39550716 G A STOML3 Missense_Mutation p.R64C 0.44 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GJ-06 13 46357845 46357845 G A SIAH3 Silent p.S161S 0.42 TCGA-EE-A2GJ-06 13 52952660 52952660 C T THSD1 Missense_Mutation p.G482E 0.40 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A2GJ-06 13 60453532 60453532 A C DIAPH3 Missense_Mutation p.V813G 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 13 77655574 77655574 G A MYCBP2 Silent p.S3764S 0.51 TCGA-EE-A2GJ-06 13 84455470 84455470 G A SLITRK1 Missense_Mutation p.S58F 0.47 tolerated(0.76) benign(0.127) TCGA-EE-A2GJ-06 14 106173759 106173759 C T IGHA1 Missense_Mutation p.E270K 0.60 tolerated(0.1) benign(0.373) TCGA-EE-A2GJ-06 14 106208272 106208272 C T IGHG1 Missense_Mutation p.A210T 0.42 tolerated(0.5) possibly_damaging(0.48) TCGA-EE-A2GJ-06 14 106237454 106237454 C T IGHG3 Missense_Mutation p.R97K 0.39 tolerated(1) benign(0.002) TCGA-EE-A2GJ-06 14 106586370 106586370 G A IGHV3-13 Missense_Mutation p.L39F 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-EE-A2GJ-06 14 106622086 106622086 C T IGHV3-16 Missense_Mutation p.M53I 0.55 deleterious_low_confidence(0.03) benign(0.257) TCGA-EE-A2GJ-06 14 107083719 107083719 G A IGHV4-59 5'UTR 0.50 TCGA-EE-A2GJ-06 14 19378002 19378002 C T OR11H12 Nonsense_Mutation p.Q137* 0.15 TCGA-EE-A2GJ-06 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.20 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2GJ-06 14 20344634 20344634 G A OR4K2 Missense_Mutation p.D70N 0.19 deleterious(0.01) possibly_damaging(0.865) TCGA-EE-A2GJ-06 14 20404572 20404572 T A OR4K1 Silent p.L249L 0.20 TCGA-EE-A2GJ-06 14 20482649 20482649 G A OR4K14 Missense_Mutation p.S235F 0.44 deleterious(0.02) benign(0.072) TCGA-EE-A2GJ-06 14 20502084 20502084 G A OR4K13 Silent p.F278F 0.23 TCGA-EE-A2GJ-06 14 20774126 20774126 A G TTC5 5'UTR 0.34 TCGA-EE-A2GJ-06 14 21024965 21024965 C T RNASE9 Missense_Mutation p.M93I 0.32 tolerated(0.09) benign(0.108) TCGA-EE-A2GJ-06 14 21491038 21491038 G A NDRG2 Silent p.L34L 0.29 TCGA-EE-A2GJ-06 14 21553046 21553046 G A ARHGEF40 Silent p.G1308G 0.26 TCGA-EE-A2GJ-06 14 21624050 21624050 G A OR5AU1 Silent p.I45I 0.37 TCGA-EE-A2GJ-06 14 22133482 22133482 C T OR4E2 Silent p.F62F 0.30 TCGA-EE-A2GJ-06 14 22265588 22265588 G A TRAV8-1 5'UTR 0.23 TCGA-EE-A2GJ-06 14 22356646 22356646 C T TRAV12-2 Missense_Mutation p.P102S 0.30 deleterious(0.04) benign(0.359) TCGA-EE-A2GJ-06 14 22694674 22694674 G A TRAV36DV7 Silent p.Q6Q 0.38 TCGA-EE-A2GJ-06 14 22994658 22994658 A C TRAJ18 Silent p.R14R 0.23 TCGA-EE-A2GJ-06 14 23072519 23072519 T C ABHD4 Missense_Mutation p.F113L 0.34 deleterious(0.04) possibly_damaging(0.496) TCGA-EE-A2GJ-06 14 23528315 23528315 G A ACIN1 3'UTR 0.34 TCGA-EE-A2GJ-06 14 23745814 23745814 G A HOMEZ Missense_Mutation p.P208L 0.27 tolerated_low_confidence(0.11) benign(0.303) TCGA-EE-A2GJ-06 14 23817423 23817423 C T SLC22A17 Missense_Mutation p.R262Q 0.36 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A2GJ-06 14 23902789 23902789 G A MYH7 Silent p.I51I 0.35 TCGA-EE-A2GJ-06 14 24569335 24569335 G A PCK2 Missense_Mutation p.D383N 0.35 deleterious(0.05) benign(0.044) TCGA-EE-A2GJ-06 14 24588358 24588358 G A DCAF11 Missense_Mutation p.D262N 0.27 tolerated(0.17) benign(0.001) TCGA-EE-A2GJ-06 14 31085542 31085542 C T G2E3 Silent p.S641S 0.14 TCGA-EE-A2GJ-06 14 31637529 31637529 G A HECTD1 Nonsense_Mutation p.Q533* 0.29 TCGA-EE-A2GJ-06 14 32615491 32615491 C T ARHGAP5 Silent p.Y1296Y 0.29 TCGA-EE-A2GJ-06 14 32615492 32615492 C T ARHGAP5 Missense_Mutation p.R1297C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 14 36226075 36226075 G A RALGAPA1 Missense_Mutation p.P196L 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GJ-06 14 36226076 36226076 G A RALGAPA1 Missense_Mutation p.P196S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GJ-06 14 51382199 51382199 G A PYGL Missense_Mutation p.P420S 0.34 deleterious(0.04) benign(0.028) TCGA-EE-A2GJ-06 14 52433367 52433367 C T GNG2 Missense_Mutation p.P60S 0.30 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GJ-06 14 55236922 55236922 G A SAMD4A Missense_Mutation p.G566E 0.33 deleterious(0.04) possibly_damaging(0.873) TCGA-EE-A2GJ-06 14 61180583 61180583 G A SIX4 Missense_Mutation p.P630S 0.46 tolerated_low_confidence(0.33) benign(0.003) TCGA-EE-A2GJ-06 14 61190726 61190726 C T SIX4 Missense_Mutation p.E23K 0.35 tolerated_low_confidence(0.05) probably_damaging(0.971) TCGA-EE-A2GJ-06 14 63174486 63174486 C T KCNH5 Missense_Mutation p.E903K 0.36 deleterious_low_confidence(0) benign(0.373) TCGA-EE-A2GJ-06 14 65031494 65031494 G A PPP1R36 Missense_Mutation p.E70K 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2GJ-06 14 65494184 65494184 C T FNTB Silent p.L130L 0.33 TCGA-EE-A2GJ-06 14 69521511 69521511 G A DCAF5 Missense_Mutation p.S631L 0.35 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-EE-A2GJ-06 14 70252859 70252859 G A SLC10A1 Silent p.I174I 0.38 TCGA-EE-A2GJ-06 14 71209195 71209195 C T MAP3K9 Silent p.L480L 0.23 TCGA-EE-A2GJ-06 14 72936762 72936762 C T RGS6 Silent p.F169F 0.39 TCGA-EE-A2GJ-06 14 88789132 88789132 G A KCNK10 Missense_Mutation p.P4L 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 14 89042269 89042269 A G ZC3H14 Missense_Mutation p.T370A 0.41 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A2GJ-06 14 92336596 92336596 C T FBLN5 Missense_Mutation p.R440Q 0.51 deleterious(0.01) benign(0.111) TCGA-EE-A2GJ-06 14 94158208 94158208 C T UNC79 Silent p.F2324F 0.52 TCGA-EE-A2GJ-06 14 94413746 94413746 T C ASB2 Missense_Mutation p.N334S 0.44 tolerated(0.43) possibly_damaging(0.475) TCGA-EE-A2GJ-06 14 94756405 94756405 C T SERPINA10 Missense_Mutation p.E176K 0.37 tolerated(0.09) benign(0.009) TCGA-EE-A2GJ-06 14 94914706 94914706 T G SERPINA11 Missense_Mutation p.K136Q 0.51 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GJ-06 14 95030311 95030311 G A SERPINA4 Silent p.E164E 0.57 TCGA-EE-A2GJ-06 14 95053711 95053711 C T SERPINA5 Silent p.F4F 0.48 TCGA-EE-A2GJ-06 14 95906332 95906332 G A SYNE3 Silent p.I664I 0.51 TCGA-EE-A2GJ-06 14 96706806 96706806 C T BDKRB2 Silent p.C47C 0.49 TCGA-EE-A2GJ-06 15 22382823 22382823 G A OR4N4 Silent p.V117V 0.14 TCGA-EE-A2GJ-06 15 22473085 22473085 C T IGHV4OR15-8 Silent p.G62G 0.13 TCGA-EE-A2GJ-06 15 22940812 22940812 C T CYFIP1 Silent p.F359F 0.33 TCGA-EE-A2GJ-06 15 25325369 25325369 G A SNORD116-14 RNA 0.32 TCGA-EE-A2GJ-06 15 25438522 25438522 C T SNORD115-11 3'Flank 0.31 TCGA-EE-A2GJ-06 15 28362298 28362298 G A HERC2 Silent p.V4425V 0.46 TCGA-EE-A2GJ-06 15 28502311 28502311 G A HERC2 Silent p.L805L 0.46 TCGA-EE-A2GJ-06 15 34640675 34640675 C T NUTM1 Silent p.P174P 0.30 TCGA-EE-A2GJ-06 15 34647840 34647840 G A NUTM1 Missense_Mutation p.G516E 0.38 deleterious(0.02) possibly_damaging(0.736) TCGA-EE-A2GJ-06 15 41861141 41861141 C T TYRO3 Silent p.I391I 0.32 TCGA-EE-A2GJ-06 15 42519037 42519037 A T TMEM87A Missense_Mutation p.M457K 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 15 43360109 43360109 G C UBR1 Missense_Mutation p.A262G 0.35 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A2GJ-06 15 43817994 43817994 G A MAP1A Silent p.K1441K 0.28 TCGA-EE-A2GJ-06 15 44898230 44898230 A T SPG11 Silent p.A1171A 0.31 TCGA-EE-A2GJ-06 15 48719795 48719795 G A FBN1 Silent p.P2391P 0.34 TCGA-EE-A2GJ-06 15 50212466 50212466 C T ATP8B4 Missense_Mutation p.E634K 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GJ-06 15 51773612 51773612 G A DMXL2 Silent p.C1897C 0.30 TCGA-EE-A2GJ-06 15 51791231 51791231 C T DMXL2 Missense_Mutation p.R1397Q 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 15 54685301 54685301 A T UNC13C Missense_Mutation p.D1590V 0.28 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A2GJ-06 15 54825229 54825229 T C UNC13C Silent p.I1887I 0.44 TCGA-EE-A2GJ-06 15 56130018 56130018 C T NEDD4 Missense_Mutation p.R1091Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GJ-06 15 57910270 57910270 C T MYZAP Missense_Mutation p.P68S 0.33 tolerated(0.28) benign(0.09) TCGA-EE-A2GJ-06 15 58465319 58465319 G A AQP9 Missense_Mutation p.M97I 0.29 tolerated(0.15) benign(0.314) TCGA-EE-A2GJ-06 15 58467217 58467217 G A AQP9 Silent p.A159A 0.30 TCGA-EE-A2GJ-06 15 59323125 59323125 G A RNF111 Missense_Mutation p.G35E 0.28 tolerated_low_confidence(0.35) possibly_damaging(0.794) TCGA-EE-A2GJ-06 15 63000709 63000709 C T TLN2 Silent p.S727S 0.28 TCGA-EE-A2GJ-06 15 64915042 64915042 C T ZNF609 Missense_Mutation p.S255F 0.30 tolerated(0.2) possibly_damaging(0.865) TCGA-EE-A2GJ-06 15 65890674 65890674 T A VWA9 Nonsense_Mutation p.K188* 0.19 TCGA-EE-A2GJ-06 15 68608005 68608005 C T ITGA11 Missense_Mutation p.E926K 0.18 tolerated(0.37) benign(0.001) TCGA-EE-A2GJ-06 15 69733239 69733239 C T KIF23 Missense_Mutation p.P734S 0.54 tolerated(0.15) benign(0.003) TCGA-EE-A2GJ-06 15 72057427 72057427 C T THSD4 Silent p.T886T 0.37 TCGA-EE-A2GJ-06 15 74363284 74363284 G A GOLGA6A Silent p.I683I 0.13 TCGA-EE-A2GJ-06 15 74630423 74630423 C T CYP11A1 Missense_Mutation p.E486K 0.33 deleterious(0.03) benign(0.424) TCGA-EE-A2GJ-06 15 74742300 74742300 G A UBL7 Missense_Mutation p.S214F 0.32 deleterious(0) benign(0.118) TCGA-EE-A2GJ-06 15 74887993 74887993 G A ARID3B Missense_Mutation p.G521R 0.28 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GJ-06 15 75815515 75815515 G A PTPN9 Silent p.V123V 0.33 TCGA-EE-A2GJ-06 15 75890927 75890927 G A SNUPN Silent p.V285V 0.29 TCGA-EE-A2GJ-06 15 76630250 76630250 G A ISL2 Missense_Mutation p.E64K 0.29 deleterious(0.02) possibly_damaging(0.718) TCGA-EE-A2GJ-06 15 79058565 79058565 G A ADAMTS7 Missense_Mutation p.P1230S 0.31 tolerated(0.2) benign(0.035) TCGA-EE-A2GJ-06 15 83699002 83699002 C T BTBD1 Missense_Mutation p.R314Q 0.35 tolerated(0.41) benign(0.011) TCGA-EE-A2GJ-06 15 83926632 83926632 G A BNC1 Silent p.P849P 0.31 TCGA-EE-A2GJ-06 15 83932172 83932172 G A BNC1 Missense_Mutation p.R611C 0.34 tolerated(0.18) benign(0.243) TCGA-EE-A2GJ-06 15 84611694 84611694 G A ADAMTSL3 Missense_Mutation p.V784I 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 15 84651197 84651197 C T ADAMTSL3 Silent p.F939F 0.37 TCGA-EE-A2GJ-06 15 88472356 88472356 G A NTRK3 Intron 0.25 TCGA-EE-A2GJ-06 15 89848902 89848902 G A FANCI Missense_Mutation p.G1108R 0.33 tolerated(0.26) benign(0.019) TCGA-EE-A2GJ-06 15 93277250 93277250 G A RP11-386M24.4 RNA 0.45 TCGA-EE-A2GJ-06 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.29 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2GJ-06 16 10721525 10721525 G A TEKT5 Missense_Mutation p.A458V 0.36 deleterious(0.05) benign(0.348) TCGA-EE-A2GJ-06 16 12662380 12662380 G A SNX29 Missense_Mutation p.G779E 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.632) TCGA-EE-A2GJ-06 16 1270431 1270431 G A CACNA1H Missense_Mutation p.E2167K 0.29 tolerated(0.43) benign(0.345) TCGA-EE-A2GJ-06 16 14328110 14328110 C T MKL2 Silent p.S267S 0.30 TCGA-EE-A2GJ-06 16 14973896 14973896 C T NOMO1 Missense_Mutation p.P928S 0.22 deleterious(0.02) probably_damaging(0.948) TCGA-EE-A2GJ-06 16 1547053 1547053 C T TELO2 Silent p.S210S 0.42 TCGA-EE-A2GJ-06 16 15709850 15709850 A G KIAA0430 Silent p.C1030C 0.28 TCGA-EE-A2GJ-06 16 19020599 19020599 C T TMC7 Missense_Mutation p.S58F 0.37 tolerated(0.07) benign(0.081) TCGA-EE-A2GJ-06 16 19236021 19236021 C T SYT17 Silent p.I363I 0.42 TCGA-EE-A2GJ-06 16 19451378 19451378 G A TMC5 Silent p.R6R 0.24 TCGA-EE-A2GJ-06 16 19452014 19452014 C T TMC5 Silent p.P218P 0.30 TCGA-EE-A2GJ-06 16 19460909 19460909 G A TMC5 Missense_Mutation p.G335E 0.32 tolerated(0.11) benign(0.014) TCGA-EE-A2GJ-06 16 19475337 19475337 C T TMC5 Silent p.F492F 0.25 TCGA-EE-A2GJ-06 16 2025693 2025693 C T TBL3 Silent p.S323S 0.35 TCGA-EE-A2GJ-06 16 2025694 2025694 C T TBL3 Silent p.L324L 0.33 TCGA-EE-A2GJ-06 16 20871470 20871470 G A DCUN1D3 Missense_Mutation p.P218L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 16 20871471 20871471 G A DCUN1D3 Missense_Mutation p.P218S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 16 21122973 21122973 C T DNAH3 Silent p.V691V 0.23 TCGA-EE-A2GJ-06 16 23767750 23767750 T G CHP2 Missense_Mutation p.S132A 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GJ-06 16 23768600 23768600 G A CHP2 Missense_Mutation p.D165N 0.29 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GJ-06 16 24573272 24573272 C T RBBP6 Missense_Mutation p.S360F 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.791) TCGA-EE-A2GJ-06 16 27459782 27459782 A G IL21R Intron 0.42 TCGA-EE-A2GJ-06 16 2880726 2880726 C T ZG16B Silent p.F64F 0.35 TCGA-EE-A2GJ-06 16 28925996 28925996 G A RABEP2 Silent p.I180I 0.27 TCGA-EE-A2GJ-06 16 2979713 2979713 G A FLYWCH1 Silent p.Q9Q 0.37 TCGA-EE-A2GJ-06 16 29992969 29992969 C T TAOK2 Intron 0.39 TCGA-EE-A2GJ-06 16 30980955 30980955 T G SETD1A Missense_Mutation p.D987E 0.26 benign(0.002) TCGA-EE-A2GJ-06 16 31212865 31212865 G A PYCARD 3'UTR 0.27 TCGA-EE-A2GJ-06 16 31336715 31336715 C T ITGAM Missense_Mutation p.S833F 0.22 tolerated(0.29) benign(0.162) TCGA-EE-A2GJ-06 16 31383821 31383821 C T ITGAX Silent p.F761F 0.36 TCGA-EE-A2GJ-06 16 31498727 31498727 G A SLC5A2 Intron 0.36 TCGA-EE-A2GJ-06 16 3727657 3727657 G T TRAP1 Silent p.A182A 0.33 TCGA-EE-A2GJ-06 16 48173146 48173146 C T ABCC12 Silent p.A253A 0.40 TCGA-EE-A2GJ-06 16 4833547 4833547 G A SEPT12 Silent p.N214N 0.35 TCGA-EE-A2GJ-06 16 5046880 5046880 C T SEC14L5 Missense_Mutation p.R269W 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 16 57416259 57416259 C T CX3CL1 Missense_Mutation p.P170L 0.44 tolerated(0.22) benign(0.001) TCGA-EE-A2GJ-06 16 57416260 57416260 C T CX3CL1 Silent p.P170P 0.43 TCGA-EE-A2GJ-06 16 57546746 57546746 C T CCDC102A Silent p.G520G 0.34 TCGA-EE-A2GJ-06 16 58570932 58570932 G A CNOT1 Silent p.G1869G 0.38 TCGA-EE-A2GJ-06 16 67314616 67314616 C T PLEKHG4 Missense_Mutation p.P168S 0.26 tolerated(0.36) benign(0.007) TCGA-EE-A2GJ-06 16 71149630 71149630 G A HYDIN Silent p.L432L 0.33 TCGA-EE-A2GJ-06 16 71163659 71163659 C T HYDIN Missense_Mutation p.D371N 0.27 probably_damaging(0.981) TCGA-EE-A2GJ-06 16 71571180 71571180 C T CHST4 Silent p.I200I 0.23 TCGA-EE-A2GJ-06 16 71610158 71610158 T C TAT Missense_Mutation p.N54S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 16 727513 727513 G A RHBDL1 Missense_Mutation p.G313D 0.33 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GJ-06 16 72827743 72827743 C T ZFHX3 Silent p.Q2946Q 0.26 TCGA-EE-A2GJ-06 16 7382884 7382884 C T RBFOX1 5'UTR 0.41 TCGA-EE-A2GJ-06 16 74455147 74455147 G A CLEC18B Missense_Mutation p.P8S 0.26 tolerated_low_confidence(0.14) benign(0.002) TCGA-EE-A2GJ-06 16 74493682 74493682 G A GLG1 Silent p.S1014S 0.41 TCGA-EE-A2GJ-06 16 84066964 84066964 G A SLC38A8 Missense_Mutation p.P167S 0.29 deleterious(0.04) possibly_damaging(0.633) TCGA-EE-A2GJ-06 16 84214762 84214762 G A TAF1C Missense_Mutation p.R425C 0.32 deleterious(0.01) benign(0.347) TCGA-EE-A2GJ-06 16 84224808 84224808 C T ADAD2 5'UTR 0.38 TCGA-EE-A2GJ-06 16 84229830 84229830 C T ADAD2 Silent p.V542V 0.25 TCGA-EE-A2GJ-06 16 84488421 84488421 A G ATP2C2 Intron 0.20 TCGA-EE-A2GJ-06 16 84488422 84488422 A C ATP2C2 Splice_Site p.X661_splice 0.22 TCGA-EE-A2GJ-06 16 84690709 84690709 C T KLHL36 Missense_Mutation p.A99V 0.24 tolerated(0.09) possibly_damaging(0.741) TCGA-EE-A2GJ-06 16 84882995 84882995 C T CRISPLD2 Missense_Mutation p.R122C 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 16 85936494 85936494 C T IRF8 Intron 0.33 TCGA-EE-A2GJ-06 16 85952177 85952177 C T IRF8 Silent p.F252F 0.26 TCGA-EE-A2GJ-06 16 86575369 86575369 G A MTHFSD Silent p.L205L 0.32 TCGA-EE-A2GJ-06 16 89261465 89261465 C T CDH15 Missense_Mutation p.P783S 0.27 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-EE-A2GJ-06 16 8996003 8996003 G A USP7 Silent p.F661F 0.21 TCGA-EE-A2GJ-06 17 10358358 10358358 C T MYH4 Missense_Mutation p.E779K 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 17 10362699 10362699 C T MYH4 Missense_Mutation p.E486K 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GJ-06 17 10399694 10399694 C T MYH1 Missense_Mutation p.R1610K 0.53 tolerated(0.22) benign(0.008) TCGA-EE-A2GJ-06 17 10419600 10419600 G A MYH1 Silent p.I88I 0.47 TCGA-EE-A2GJ-06 17 12626277 12626277 G A MYOCD Missense_Mutation p.E123K 0.50 tolerated(0.05) probably_damaging(0.986) TCGA-EE-A2GJ-06 17 13972863 13972863 A G COX10 5'UTR 0.33 TCGA-EE-A2GJ-06 17 16455518 16455518 T G ZNF287 Missense_Mutation p.K646N 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 17 18023148 18023148 C T MYO15A Missense_Mutation p.P345L 0.47 possibly_damaging(0.713) TCGA-EE-A2GJ-06 17 18023245 18023245 C T MYO15A Silent p.T377T 0.45 TCGA-EE-A2GJ-06 17 21201725 21201725 G A MAP2K3 Missense_Mutation p.G17E 0.20 tolerated(0.53) benign(0.027) TCGA-EE-A2GJ-06 17 21731478 21731478 G A UBBP4 Missense_Mutation p.E185K 0.37 tolerated(1) benign(0.001) TCGA-EE-A2GJ-06 17 26800787 26800787 C T SLC13A2 Silent p.F19F 0.33 TCGA-EE-A2GJ-06 17 26823577 26823577 C T SLC13A2 Missense_Mutation p.S576F 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 17 27296881 27296881 G A SEZ6 Silent p.F316F 0.27 TCGA-EE-A2GJ-06 17 28770828 28770828 G A CPD Silent p.Q794Q 0.31 TCGA-EE-A2GJ-06 17 28783503 28783503 A T CPD Missense_Mutation p.M1153L 0.46 tolerated(1) benign(0.009) TCGA-EE-A2GJ-06 17 29280360 29280360 G A ADAP2 Missense_Mutation p.G266R 0.33 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GJ-06 17 29858751 29858751 G A RAB11FIP4 3'UTR 0.35 TCGA-EE-A2GJ-06 17 31322522 31322522 G A SPACA3 Missense_Mutation p.G44S 0.34 tolerated_low_confidence(0.23) possibly_damaging(0.855) TCGA-EE-A2GJ-06 17 32954075 32954075 A C TMEM132E Silent p.R243R 0.35 TCGA-EE-A2GJ-06 17 33289169 33289169 C T ZNF830 Missense_Mutation p.S195F 0.40 deleterious(0.02) benign(0.193) TCGA-EE-A2GJ-06 17 33679437 33679437 G A SLFN11 Silent p.L882L 0.28 TCGA-EE-A2GJ-06 17 33767881 33767881 A C SLFN13 Silent p.V809V 0.40 TCGA-EE-A2GJ-06 17 33802161 33802161 G A SLFN12L Silent p.I516I 0.31 TCGA-EE-A2GJ-06 17 34144726 34144726 G T TAF15 Missense_Mutation p.G5V 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GJ-06 17 34263826 34263826 G A LYZL6 Missense_Mutation p.P104S 0.37 tolerated(0.21) benign(0.146) TCGA-EE-A2GJ-06 17 35830620 35830620 C T TADA2A Missense_Mutation p.R338C 0.30 deleterious(0.02) benign(0.163) TCGA-EE-A2GJ-06 17 37046721 37046721 C T LASP1 Silent p.N71N 0.20 TCGA-EE-A2GJ-06 17 37046722 37046722 C T LASP1 Missense_Mutation p.L72F 0.20 deleterious(0.02) probably_damaging(0.944) TCGA-EE-A2GJ-06 17 37265218 37265218 G A PLXDC1 Silent p.V136V 0.24 TCGA-EE-A2GJ-06 17 37371246 37371246 C T STAC2 Missense_Mutation p.E244K 0.35 tolerated(0.13) benign(0.14) TCGA-EE-A2GJ-06 17 38062490 38062490 C T GSDMB Missense_Mutation p.M254I 0.28 tolerated(0.27) benign(0.004) TCGA-EE-A2GJ-06 17 38122529 38122529 G A GSDMA Silent p.G77G 0.38 TCGA-EE-A2GJ-06 17 3848063 3848063 C T ATP2A3 Missense_Mutation p.D408N 0.42 tolerated(0.07) possibly_damaging(0.822) TCGA-EE-A2GJ-06 17 38792324 38792324 G A SMARCE1 Missense_Mutation p.H134Y 0.23 deleterious(0) benign(0.415) TCGA-EE-A2GJ-06 17 38855755 38855755 G A KRT24 Silent p.I434I 0.32 TCGA-EE-A2GJ-06 17 38976631 38976631 C T KRT10 Silent p.V304V 0.26 TCGA-EE-A2GJ-06 17 39670262 39670262 C T KRT15 3'UTR 0.33 TCGA-EE-A2GJ-06 17 40315269 40315269 G A KCNH4 Missense_Mutation p.P854L 0.34 tolerated(0.08) benign(0.002) TCGA-EE-A2GJ-06 17 41020120 41020120 G A AOC4P RNA 0.24 TCGA-EE-A2GJ-06 17 41571178 41571178 C T DHX8 Missense_Mutation p.P379L 0.31 tolerated(0.35) benign(0.001) TCGA-EE-A2GJ-06 17 43343871 43343871 G A SPATA32 5'Flank 0.33 TCGA-EE-A2GJ-06 17 43922587 43922587 G A SPPL2C Silent p.T105T 0.40 TCGA-EE-A2GJ-06 17 44060587 44060587 G A MAPT Silent p.E139E 0.47 TCGA-EE-A2GJ-06 17 44076811 44076811 T G STH Missense_Mutation p.S56A 0.25 tolerated_low_confidence(0.16) benign(0.198) TCGA-EE-A2GJ-06 17 44076813 44076813 C T STH Silent p.S56S 0.26 TCGA-EE-A2GJ-06 17 4726006 4726006 C T PLD2 Silent p.P883P 0.42 TCGA-EE-A2GJ-06 17 47579543 47579543 C T NGFR Missense_Mutation p.T62I 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 17 47685283 47685283 G A SPOP Missense_Mutation p.P223S 0.34 deleterious(0) benign(0.437) TCGA-EE-A2GJ-06 17 48434518 48434518 G A XYLT2 Missense_Mutation p.G616R 0.37 tolerated(0.23) benign(0.015) TCGA-EE-A2GJ-06 17 48745836 48745836 G A ABCC3 Missense_Mutation p.E610K 0.33 deleterious(0) possibly_damaging(0.611) TCGA-EE-A2GJ-06 17 48746224 48746224 C T ABCC3 Silent p.I627I 0.23 TCGA-EE-A2GJ-06 17 4926928 4926928 C T KIF1C Missense_Mutation p.P932S 0.24 tolerated_low_confidence(0.22) possibly_damaging(0.857) TCGA-EE-A2GJ-06 17 49731087 49731087 A C CA10 Missense_Mutation p.I159S 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 17 5085039 5085039 G A ZNF594 3'UTR 0.42 TCGA-EE-A2GJ-06 17 5347575 5347575 C A DHX33 Nonsense_Mutation p.E692* 0.13 TCGA-EE-A2GJ-06 17 5388504 5388504 G A DERL2 Silent p.Y42Y 0.35 TCGA-EE-A2GJ-06 17 56384997 56384997 G A BZRAP1 Missense_Mutation p.P1653L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 17 56435450 56435450 G A RNF43 Nonsense_Mutation p.Q563* 0.34 TCGA-EE-A2GJ-06 17 56557419 56557419 G A HSF5 Missense_Mutation p.P254S 0.30 tolerated(0.06) possibly_damaging(0.851) TCGA-EE-A2GJ-06 17 57093067 57093067 T C TRIM37 Missense_Mutation p.D827G 0.42 deleterious_low_confidence(0.01) benign(0.213) TCGA-EE-A2GJ-06 17 57290928 57290928 C T SMG8 Missense_Mutation p.P915L 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GJ-06 17 57754377 57754377 C T CLTC Missense_Mutation p.T875I 0.28 tolerated(0.24) benign(0.124) TCGA-EE-A2GJ-06 17 60344541 60344541 C T TBC1D3P2 RNA 0.31 TCGA-EE-A2GJ-06 17 60813261 60813261 G A MARCH10 Intron 0.38 TCGA-EE-A2GJ-06 17 61613048 61613048 C T KCNH6 Silent p.L374L 0.40 TCGA-EE-A2GJ-06 17 61949751 61949751 C T CSH2 Intron 0.38 TCGA-EE-A2GJ-06 17 650010 650010 A T GEMIN4 Missense_Mutation p.F425I 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 17 65955759 65955759 C T BPTF Missense_Mutation p.P2677S 0.39 benign(0.086) TCGA-EE-A2GJ-06 17 6929856 6929856 G A BCL6B Missense_Mutation p.E324K 0.49 tolerated(0.45) benign(0.003) TCGA-EE-A2GJ-06 17 72832438 72832438 A G TMEM104 Missense_Mutation p.N368S 0.30 tolerated(0.72) benign(0.124) TCGA-EE-A2GJ-06 17 74005097 74005097 C T EVPL Missense_Mutation p.E1397K 0.31 deleterious(0.01) benign(0.326) TCGA-EE-A2GJ-06 17 75398431 75398431 G T SEPT9 Missense_Mutation p.G123W 0.24 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-EE-A2GJ-06 17 75398432 75398432 G A SEPT9 Missense_Mutation p.G123E 0.26 deleterious_low_confidence(0.01) benign(0.193) TCGA-EE-A2GJ-06 17 7578264 7578267 GATA AAT TP53 Frame_Shift_Del p.I195Ffs*52 0.40 TCGA-EE-A2GJ-06 17 76482050 76482050 G A DNAH17 Missense_Mutation p.P2409S 0.27 benign(0.283) TCGA-EE-A2GJ-06 17 79609470 79609470 C T TSPAN10 Missense_Mutation p.S11F 0.30 deleterious(0.02) benign(0.144) TCGA-EE-A2GJ-06 17 79620265 79620265 C T PDE6G Missense_Mutation p.R24K 0.32 tolerated_low_confidence(0.34) benign(0.008) TCGA-EE-A2GJ-06 17 7984159 7984159 G A AC129492.6 3'UTR 0.56 TCGA-EE-A2GJ-06 17 80399035 80399035 C T HEXDC Missense_Mutation p.S382F 0.30 deleterious_low_confidence(0.01) benign(0.354) TCGA-EE-A2GJ-06 17 80788365 80788365 C T ZNF750 Missense_Mutation p.A609T 0.46 tolerated(0.56) benign(0.007) TCGA-EE-A2GJ-06 17 9515711 9515711 A C WDR16 Missense_Mutation p.I314L 0.48 tolerated(0.07) benign(0.016) TCGA-EE-A2GJ-06 17 9532059 9532059 G A WDR16 Missense_Mutation p.E366K 0.50 deleterious(0) possibly_damaging(0.87) TCGA-EE-A2GJ-06 17 9783827 9783827 C T GLP2R Silent p.S426S 0.48 TCGA-EE-A2GJ-06 18 12987114 12987114 G A SEH1L 3'UTR 0.32 TCGA-EE-A2GJ-06 18 28584168 28584168 C T DSC3 Missense_Mutation p.G685R 0.36 tolerated(0.07) benign(0.007) TCGA-EE-A2GJ-06 18 28662218 28662218 G A DSC2 Missense_Mutation p.L417F 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 18 28669455 28669455 C T DSC2 Missense_Mutation p.G193R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 18 28711664 28711664 C T DSC1 Missense_Mutation p.G794R 0.36 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GJ-06 18 28720107 28720107 G A DSC1 Missense_Mutation p.P473L 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GJ-06 18 29055672 29055672 G A DSG3 Missense_Mutation p.D817N 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 18 29340393 29340393 G A SLC25A52 Nonsense_Mutation p.R88* 0.30 TCGA-EE-A2GJ-06 18 31320358 31320358 C T ASXL3 Missense_Mutation p.P997L 0.39 benign(0.092) TCGA-EE-A2GJ-06 18 42531222 42531222 G A SETBP1 Silent p.E639E 0.26 TCGA-EE-A2GJ-06 18 45566434 45566434 G A ZBTB7C Missense_Mutation p.P349S 0.27 tolerated(0.15) benign(0.13) TCGA-EE-A2GJ-06 18 50432669 50432669 G A DCC Missense_Mutation p.G223E 0.29 deleterious(0.01) possibly_damaging(0.813) TCGA-EE-A2GJ-06 18 52555288 52555288 G A RAB27B Missense_Mutation p.D136N 0.30 deleterious(0) probably_damaging(0.911) TCGA-EE-A2GJ-06 18 52596091 52596091 C T CCDC68 Missense_Mutation p.R208K 0.19 tolerated(1) benign(0.003) TCGA-EE-A2GJ-06 18 52604176 52604176 C T CCDC68 Missense_Mutation p.R120K 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2GJ-06 18 54814973 54814973 C T BOD1L2 Silent p.L144L 0.33 TCGA-EE-A2GJ-06 18 56205126 56205126 G A ALPK2 Missense_Mutation p.R765C 0.30 tolerated(0.11) benign(0.443) TCGA-EE-A2GJ-06 18 56205350 56205350 G A ALPK2 Missense_Mutation p.S690F 0.27 tolerated(0.69) benign(0.015) TCGA-EE-A2GJ-06 18 580612 580612 G A CETN1 Silent p.E68E 0.37 TCGA-EE-A2GJ-06 18 61324641 61324641 T A SERPINB3 Missense_Mutation p.I159F 0.33 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GJ-06 18 61326699 61326699 G A SERPINB3 Silent p.S95S 0.28 TCGA-EE-A2GJ-06 18 61390289 61390289 G A SERPINB11 Missense_Mutation p.E279K 0.23 tolerated(0.52) benign(0.359) TCGA-EE-A2GJ-06 18 70417358 70417358 C T NETO1 Missense_Mutation p.E494K 0.20 tolerated_low_confidence(0.31) benign(0.339) TCGA-EE-A2GJ-06 18 74649199 74649199 C T ZNF236 Missense_Mutation p.S1559L 0.48 tolerated(0.09) benign(0.356) TCGA-EE-A2GJ-06 19 11422892 11422892 G A TSPAN16 Silent p.V227V 0.31 TCGA-EE-A2GJ-06 19 12298480 12298480 C T ZNF136 Silent p.F429F 0.25 TCGA-EE-A2GJ-06 19 12502860 12502860 G A ZNF799 Missense_Mutation p.L118F 0.43 tolerated(0.19) benign(0.325) TCGA-EE-A2GJ-06 19 12975890 12975890 G A MAST1 Silent p.K512K 0.18 TCGA-EE-A2GJ-06 19 12975917 12975917 G C MAST1 Missense_Mutation p.M521I 0.21 tolerated(1) benign(0.03) TCGA-EE-A2GJ-06 19 13476165 13476165 T C CACNA1A Silent p.G250G 0.31 TCGA-EE-A2GJ-06 19 14580207 14580207 C T PKN1 Silent p.F683F 0.25 TCGA-EE-A2GJ-06 19 15272507 15272507 G A NOTCH3 Silent p.L1978L 0.31 TCGA-EE-A2GJ-06 19 15566920 15566920 G A RASAL3 Silent p.S572S 0.27 TCGA-EE-A2GJ-06 19 16024572 16024572 C T CYP4F11 Silent p.R515R 0.35 TCGA-EE-A2GJ-06 19 17397289 17397289 C T ANKLE1 Silent p.H592H 0.47 TCGA-EE-A2GJ-06 19 17728550 17728550 G A UNC13A Silent p.L1507L 0.24 TCGA-EE-A2GJ-06 19 18100635 18100635 C T KCNN1 Silent p.F427F 0.36 TCGA-EE-A2GJ-06 19 19371841 19371841 C T HAPLN4 Missense_Mutation p.V89M 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A2GJ-06 19 19371842 19371842 C T HAPLN4 Silent p.K88K 0.36 TCGA-EE-A2GJ-06 19 19637050 19637050 A G NDUFA13 Missense_Mutation p.K52E 0.18 deleterious(0.04) benign(0.091) TCGA-EE-A2GJ-06 19 19737444 19737444 C A LPAR2 Missense_Mutation p.R217L 0.31 deleterious(0.01) possibly_damaging(0.791) TCGA-EE-A2GJ-06 19 21934454 21934454 G A ZNF100 Intron 0.43 TCGA-EE-A2GJ-06 19 2222480 2222480 C T DOT1L Silent p.S1104S 0.22 TCGA-EE-A2GJ-06 19 23542382 23542382 G A ZNF91 Silent p.P1133P 0.27 TCGA-EE-A2GJ-06 19 2877909 2877909 G A ZNF556 Missense_Mutation p.G318E 0.39 tolerated(0.28) benign(0) TCGA-EE-A2GJ-06 19 30936591 30936591 G A ZNF536 Missense_Mutation p.G708R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 19 3119233 3119233 C - GNA11 Frame_Shift_Del p.R256Gfs*55 0.32 TCGA-EE-A2GJ-06 19 3151735 3151735 G A GNA15 Silent p.E172E 0.26 TCGA-EE-A2GJ-06 19 34832669 34832669 C T KIAA0355 Silent p.S610S 0.29 TCGA-EE-A2GJ-06 19 35551285 35551285 C T HPN Silent p.I163I 0.37 TCGA-EE-A2GJ-06 19 36278422 36278422 C T ARHGAP33 Silent p.P824P 0.39 TCGA-EE-A2GJ-06 19 36435786 36435786 C T LRFN3 Silent p.S584S 0.42 TCGA-EE-A2GJ-06 19 36562584 36562584 C T WDR62 Missense_Mutation p.L337F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 19 38103018 38103018 T G ZNF540 Silent p.G279G 0.38 TCGA-EE-A2GJ-06 19 38103515 38103515 G A ZNF540 Missense_Mutation p.G445E 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GJ-06 19 38632042 38632042 C T SIPA1L3 Missense_Mutation p.P1121L 0.28 deleterious(0.01) benign(0.034) TCGA-EE-A2GJ-06 19 38799877 38799877 G A YIF1B Missense_Mutation p.P130L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 19 38976621 38976621 C T RYR1 Missense_Mutation p.H1776Y 0.33 probably_damaging(0.946) TCGA-EE-A2GJ-06 19 38976836 38976836 C T RYR1 Silent p.T1847T 0.25 TCGA-EE-A2GJ-06 19 38979973 38979973 G A RYR1 Missense_Mutation p.E1902K 0.33 benign(0.01) TCGA-EE-A2GJ-06 19 39228929 39228929 C T CAPN12 Missense_Mutation p.E317K 0.36 deleterious(0.04) benign(0.02) TCGA-EE-A2GJ-06 19 3941087 3941087 C T NMRK2 Silent p.V138V 0.30 TCGA-EE-A2GJ-06 19 39798745 39798745 G A LRFN1 Missense_Mutation p.A615V 0.20 tolerated(0.31) benign(0.001) TCGA-EE-A2GJ-06 19 39963960 39963960 C T SUPT5H Silent p.P792P 0.35 TCGA-EE-A2GJ-06 19 40197274 40197274 C T LGALS14 Missense_Mutation p.S47L 0.38 tolerated(0.22) possibly_damaging(0.85) TCGA-EE-A2GJ-06 19 40408400 40408400 G A FCGBP Missense_Mutation p.P1480L 0.20 probably_damaging(1) TCGA-EE-A2GJ-06 19 40902863 40902863 G A PRX Missense_Mutation p.P466S 0.34 deleterious(0.02) possibly_damaging(0.803) TCGA-EE-A2GJ-06 19 41095040 41095040 C T SHKBP1 Silent p.P515P 0.32 TCGA-EE-A2GJ-06 19 41096235 41096235 C T SHKBP1 Missense_Mutation p.R559W 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 19 41600318 41600318 G A CYP2A13 Missense_Mutation p.R381Q 0.29 tolerated(0.08) benign(0.054) TCGA-EE-A2GJ-06 19 42265234 42265234 G A CEACAM6 Missense_Mutation p.E168K 0.36 deleterious(0.01) benign(0.18) TCGA-EE-A2GJ-06 19 42753410 42753410 G A ERF Missense_Mutation p.P285L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 19 43236937 43236937 G A PSG3 Silent p.L236L 0.34 TCGA-EE-A2GJ-06 19 43243169 43243169 G A PSG3 Missense_Mutation p.S46F 0.26 deleterious(0.02) benign(0.098) TCGA-EE-A2GJ-06 19 4359203 4359203 G A MPND Missense_Mutation p.R427K 0.28 tolerated(0.85) benign(0.001) TCGA-EE-A2GJ-06 19 4359204 4359204 G A MPND Silent p.R427R 0.27 TCGA-EE-A2GJ-06 19 43690569 43690569 C T PSG5 5'UTR 0.37 TCGA-EE-A2GJ-06 19 43859701 43859701 G A CD177 Silent p.G138G 0.29 TCGA-EE-A2GJ-06 19 4418031 4418031 C T CHAF1A Silent p.F325F 0.32 TCGA-EE-A2GJ-06 19 44352446 44352446 C T ZNF283 Missense_Mutation p.H565Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 19 44934700 44934700 C T ZNF229 Missense_Mutation p.D86N 0.15 tolerated(0.27) benign(0.19) TCGA-EE-A2GJ-06 19 45028276 45028276 A C CEACAM20 RNA 0.27 TCGA-EE-A2GJ-06 19 46915445 46915445 C T CCDC8 Missense_Mutation p.R208Q 0.29 benign(0.005) TCGA-EE-A2GJ-06 19 47425073 47425073 C T ARHGAP35 Silent p.V1047V 0.19 TCGA-EE-A2GJ-06 19 47535945 47535945 C T NPAS1 Silent p.F159F 0.35 TCGA-EE-A2GJ-06 19 49142225 49142225 A C CA11 Missense_Mutation p.L294W 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 19 49979049 49979049 C T FLT3LG Silent p.I45I 0.48 TCGA-EE-A2GJ-06 19 50138891 50138891 G A RRAS Missense_Mutation p.P200L 0.28 tolerated(0.09) benign(0.071) TCGA-EE-A2GJ-06 19 51218955 51218955 G A SHANK1 Silent p.T164T 0.33 TCGA-EE-A2GJ-06 19 51294910 51294910 C T ACPT Intron 0.31 TCGA-EE-A2GJ-06 19 51465128 51465128 G A KLK6 Missense_Mutation p.P152S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 19 51920542 51920542 G A SIGLEC10 Missense_Mutation p.P72L 0.29 tolerated(0.37) benign(0.101) TCGA-EE-A2GJ-06 19 51955768 51955768 C T SIGLEC8 Silent p.V455V 0.33 TCGA-EE-A2GJ-06 19 52146491 52146491 G A SIGLEC14 3'UTR 0.28 TCGA-EE-A2GJ-06 19 52934718 52934718 G A ZNF534 5'UTR 0.47 TCGA-EE-A2GJ-06 19 53741297 53741297 G A ZNF677 Missense_Mutation p.P228L 0.44 tolerated(0.1) benign(0.008) TCGA-EE-A2GJ-06 19 53762433 53762433 C T VN1R2 Missense_Mutation p.H269Y 0.36 tolerated(0.36) benign(0.205) TCGA-EE-A2GJ-06 19 53875618 53875618 A G ZNF525 Intron 0.23 TCGA-EE-A2GJ-06 19 53911937 53911937 C T ZNF765 Missense_Mutation p.H377Y 0.41 deleterious(0.01) possibly_damaging(0.602) TCGA-EE-A2GJ-06 19 53994186 53994186 C T ZNF813 Nonsense_Mutation p.Q234* 0.31 TCGA-EE-A2GJ-06 19 54172509 54172509 G A MIR512-1 3'Flank 0.22 TCGA-EE-A2GJ-06 19 54212022 54212022 G A MIR518C RNA 0.30 TCGA-EE-A2GJ-06 19 54313050 54313050 C T NLRP12 Silent p.Q621Q 0.40 TCGA-EE-A2GJ-06 19 54394975 54394975 G A PRKCG Missense_Mutation p.D193N 0.28 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2GJ-06 19 54676765 54676765 C T TMC4 Silent p.R16R 0.28 TCGA-EE-A2GJ-06 19 54802032 54802032 G A LILRA3 Missense_Mutation p.P386S 0.30 deleterious(0.04) possibly_damaging(0.483) TCGA-EE-A2GJ-06 19 54802566 54802566 C T LILRA3 Missense_Mutation p.G292E 0.23 deleterious(0.01) benign(0.349) TCGA-EE-A2GJ-06 19 55086465 55086465 C T LILRA2 Missense_Mutation p.S207F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 19 55105721 55105721 C T LILRA1 Silent p.I4I 0.40 TCGA-EE-A2GJ-06 19 55315353 55315353 C T KIR2DL4 Silent p.F16F 0.63 TCGA-EE-A2GJ-06 19 55424075 55424075 C T NCR1 Missense_Mutation p.H251Y 0.22 tolerated(0.6) benign(0.033) TCGA-EE-A2GJ-06 19 55451188 55451188 G A NLRP7 Silent p.F333F 0.38 TCGA-EE-A2GJ-06 19 56041190 56041190 G A SBK2 Silent p.I319I 0.38 TCGA-EE-A2GJ-06 19 56369320 56369320 T A NLRP4 Nonsense_Mutation p.Y187* 0.32 TCGA-EE-A2GJ-06 19 56370296 56370296 G A NLRP4 Missense_Mutation p.E513K 0.32 tolerated(0.35) benign(0.001) TCGA-EE-A2GJ-06 19 56423350 56423350 C T NLRP13 Silent p.R611R 0.32 TCGA-EE-A2GJ-06 19 56466604 56466604 C T NLRP8 Missense_Mutation p.R394W 0.28 deleterious(0) possibly_damaging(0.609) TCGA-EE-A2GJ-06 19 56701169 56701169 G A ZSCAN5B 3'UTR 0.37 TCGA-EE-A2GJ-06 19 57646872 57646872 G A ZIM3 Missense_Mutation p.S278F 0.40 deleterious(0) possibly_damaging(0.596) TCGA-EE-A2GJ-06 19 57955356 57955356 A G ZNF749 Silent p.S280S 0.35 TCGA-EE-A2GJ-06 19 6733259 6733259 G A GPR108 Silent p.P259P 0.36 TCGA-EE-A2GJ-06 19 6733682 6733682 G A GPR108 Missense_Mutation p.H208Y 0.33 tolerated(1) benign(0.029) TCGA-EE-A2GJ-06 19 6828654 6828654 G A VAV1 Missense_Mutation p.E372K 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 19 6921750 6921750 C T EMR1 Silent p.I549I 0.49 TCGA-EE-A2GJ-06 19 7184365 7184365 G A INSR Silent p.I312I 0.31 TCGA-EE-A2GJ-06 19 7975058 7975058 G A MAP2K7 Intron 0.44 TCGA-EE-A2GJ-06 19 8006055 8006055 G A TIMM44 Missense_Mutation p.L25F 0.29 tolerated_low_confidence(0.18) benign(0.003) TCGA-EE-A2GJ-06 19 8367827 8367827 G A CD320 Silent p.T180T 0.41 TCGA-EE-A2GJ-06 19 8610586 8610586 G A MYO1F Missense_Mutation p.P435L 0.36 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2GJ-06 19 8651534 8651534 G A ADAMTS10 Silent p.L771L 0.30 TCGA-EE-A2GJ-06 19 9046526 9046526 G A MUC16 Missense_Mutation p.S11702F 0.36 benign(0.063) TCGA-EE-A2GJ-06 19 9057584 9057584 C T MUC16 Missense_Mutation p.M9954I 0.30 unknown(0) TCGA-EE-A2GJ-06 19 9061841 9061841 C T MUC16 Silent p.E8535E 0.31 TCGA-EE-A2GJ-06 19 9063943 9063943 C T MUC16 Missense_Mutation p.E7835K 0.27 unknown(0) TCGA-EE-A2GJ-06 19 9064386 9064386 G A MUC16 Missense_Mutation p.P7687L 0.28 unknown(0) TCGA-EE-A2GJ-06 19 9065317 9065317 C T MUC16 Missense_Mutation p.D7377N 0.29 unknown(0) TCGA-EE-A2GJ-06 19 9085985 9085985 C T MUC16 Missense_Mutation p.E1944K 0.35 unknown(0) TCGA-EE-A2GJ-06 19 9089865 9089865 G A MUC16 Silent p.S650S 0.28 TCGA-EE-A2GJ-06 19 964880 964880 G A ARID3A Missense_Mutation p.S333N 0.44 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GJ-06 1 103471818 103471818 C T COL11A1 Silent p.R579R 0.26 TCGA-EE-A2GJ-06 1 104297374 104297374 C T AMY1C Missense_Mutation p.P347S 0.20 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GJ-06 1 107867320 107867320 C T NTNG1 Silent p.I221I 0.24 TCGA-EE-A2GJ-06 1 110301965 110301965 A C EPS8L3 Missense_Mutation p.N100K 0.55 tolerated(0.25) benign(0.076) TCGA-EE-A2GJ-06 1 110604122 110604122 C T ALX3 Missense_Mutation p.G220R 0.23 tolerated(0.35) possibly_damaging(0.878) TCGA-EE-A2GJ-06 1 110604123 110604123 C T ALX3 Silent p.E219E 0.23 TCGA-EE-A2GJ-06 1 110766203 110766203 C T KCNC4 Silent p.V432V 0.31 TCGA-EE-A2GJ-06 1 110774872 110774872 C T KCNC4 Nonsense_Mutation p.Q617* 0.37 TCGA-EE-A2GJ-06 1 11158200 11158200 G A EXOSC10 Missense_Mutation p.S42F 0.23 deleterious(0.03) benign(0.344) TCGA-EE-A2GJ-06 1 112031474 112031474 G A ADORA3 Silent p.A210A 0.54 TCGA-EE-A2GJ-06 1 11253759 11253759 G A ANGPTL7 Silent p.G200G 0.30 TCGA-EE-A2GJ-06 1 115218587 115218587 C T AMPD1 Missense_Mutation p.G509R 0.49 tolerated(0.32) probably_damaging(1) TCGA-EE-A2GJ-06 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.51 deleterious(0) possibly_damaging(0.726) TCGA-EE-A2GJ-06 1 115453082 115453082 G A SYCP1 Missense_Mutation p.G462E 0.44 tolerated(1) benign(0.02) TCGA-EE-A2GJ-06 1 115455695 115455695 C T SYCP1 Missense_Mutation p.S524L 0.25 tolerated(1) benign(0.132) TCGA-EE-A2GJ-06 1 11561576 11561576 C T PTCHD2 Missense_Mutation p.P176L 0.30 tolerated_low_confidence(0.34) benign(0) TCGA-EE-A2GJ-06 1 118565958 118565958 C T SPAG17 Silent p.T1346T 0.25 TCGA-EE-A2GJ-06 1 118623749 118623749 C T SPAG17 Silent p.K728K 0.43 TCGA-EE-A2GJ-06 1 11918773 11918773 T C NPPB Missense_Mutation p.T40A 0.35 tolerated(0.83) benign(0.001) TCGA-EE-A2GJ-06 1 120263633 120263633 C T PHGDH Intron 0.64 TCGA-EE-A2GJ-06 1 120927363 120927363 C T FCGR1B Missense_Mutation p.G206E 0.17 deleterious(0) probably_damaging(0.963) TCGA-EE-A2GJ-06 1 12337809 12337809 C T VPS13D Silent p.I1388I 0.22 TCGA-EE-A2GJ-06 1 1237424 1237424 G A ACAP3 Silent p.I94I 0.32 TCGA-EE-A2GJ-06 1 13001293 13001293 C T PRAMEF6 Silent p.R130R 0.13 TCGA-EE-A2GJ-06 1 1389841 1389841 C T ATAD3C Silent p.S113S 0.26 TCGA-EE-A2GJ-06 1 1391169 1391169 A T ATAD3C Splice_Site p.X147_splice 0.25 TCGA-EE-A2GJ-06 1 145438945 145438945 C T TXNIP Missense_Mutation p.A48V 0.36 tolerated(0.05) possibly_damaging(0.862) TCGA-EE-A2GJ-06 1 145474341 145474341 C T ANKRD34A Missense_Mutation p.P338L 0.15 tolerated(0.72) benign(0.057) TCGA-EE-A2GJ-06 1 145541455 145541455 C T ITGA10 Silent p.S1081S 0.31 TCGA-EE-A2GJ-06 1 147124277 147124277 A C ACP6 Missense_Mutation p.L286V 0.32 tolerated(0.09) benign(0.013) TCGA-EE-A2GJ-06 1 147231250 147231250 G A GJA5 Missense_Mutation p.R33C 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 1 147231251 147231251 G A GJA5 Silent p.F32F 0.38 TCGA-EE-A2GJ-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.17 TCGA-EE-A2GJ-06 1 148932909 148932909 C T RP11-14N7.2 RNA 0.04 TCGA-EE-A2GJ-06 1 150801696 150801696 C T ARNT Missense_Mutation p.S347N 0.15 deleterious(0.03) benign(0.112) TCGA-EE-A2GJ-06 1 151011442 151011442 G A BNIPL Missense_Mutation p.E125K 0.35 deleterious(0.02) possibly_damaging(0.709) TCGA-EE-A2GJ-06 1 152057751 152057751 G A TCHHL1 Nonsense_Mutation p.Q803* 0.41 TCGA-EE-A2GJ-06 1 152086520 152086520 C T TCHH Missense_Mutation p.E13K 0.19 unknown(0) TCGA-EE-A2GJ-06 1 152129231 152129231 C T RPTN Missense_Mutation p.G115E 0.39 tolerated(1) benign(0.009) TCGA-EE-A2GJ-06 1 152282971 152282971 C T FLG Missense_Mutation p.G1464E 0.22 probably_damaging(0.931) TCGA-EE-A2GJ-06 1 152283696 152283696 C T FLG Silent p.K1222K 0.41 TCGA-EE-A2GJ-06 1 152284451 152284451 G A FLG Missense_Mutation p.R971C 0.37 probably_damaging(0.957) TCGA-EE-A2GJ-06 1 152329887 152329887 A G FLG2 Silent p.H125H 0.18 TCGA-EE-A2GJ-06 1 152552221 152552221 C T LCE3D Silent p.R64R 0.45 TCGA-EE-A2GJ-06 1 152552341 152552341 C T LCE3D Silent p.K24K 0.39 TCGA-EE-A2GJ-06 1 152732591 152732591 G A KPRP Missense_Mutation p.G176E 0.15 tolerated(0.1) benign(0.324) TCGA-EE-A2GJ-06 1 152944417 152944417 G A SPRR4 Silent p.R17R 0.36 TCGA-EE-A2GJ-06 1 153312912 153312912 G A PGLYRP4 Missense_Mutation p.R257W 0.37 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GJ-06 1 153391683 153391683 G A S100A7A Silent p.K68K 0.18 TCGA-EE-A2GJ-06 1 153516209 153516210 - C S100A4 3'UTR 0.32 TCGA-EE-A2GJ-06 1 154180059 154180059 G A C1orf43 Missense_Mutation p.S211F 0.14 tolerated(0.07) probably_damaging(0.914) TCGA-EE-A2GJ-06 1 154918319 154918319 G A PBXIP1 Missense_Mutation p.R611W 0.21 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GJ-06 1 154956339 154956339 C T FLAD1 Silent p.L57L 0.25 TCGA-EE-A2GJ-06 1 155784200 155784200 G A GON4L Missense_Mutation p.P401L 0.19 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GJ-06 1 156028139 156028139 C T LAMTOR2 Missense_Mutation p.L119F 0.31 tolerated(0.1) benign(0.07) TCGA-EE-A2GJ-06 1 156146722 156146722 G A SEMA4A Silent p.K740K 0.33 TCGA-EE-A2GJ-06 1 156235791 156235791 A G SMG5 Missense_Mutation p.S546P 0.16 tolerated(0.27) benign(0) TCGA-EE-A2GJ-06 1 156566271 156566271 C T GPATCH4 Splice_Site p.X117_splice 0.38 TCGA-EE-A2GJ-06 1 156874579 156874579 C T PEAR1 Silent p.F47F 0.16 TCGA-EE-A2GJ-06 1 156874588 156874588 C T PEAR1 Silent p.L50L 0.17 TCGA-EE-A2GJ-06 1 15736621 15736621 G A EFHD2 Missense_Mutation p.D52N 0.21 tolerated(0.08) benign(0.002) TCGA-EE-A2GJ-06 1 157497595 157497595 C T FCRL5 Missense_Mutation p.R591K 0.37 tolerated(0.13) possibly_damaging(0.768) TCGA-EE-A2GJ-06 1 157737347 157737347 A G FCRL2 Intron 0.34 TCGA-EE-A2GJ-06 1 157804522 157804522 G A CD5L Silent p.F131F 0.31 TCGA-EE-A2GJ-06 1 158389833 158389833 G A OR10K2 Missense_Mutation p.S275L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 158435387 158435387 C T OR10K1 Silent p.F12F 0.27 TCGA-EE-A2GJ-06 1 158549127 158549127 T C OR10X1 Missense_Mutation p.N188S 0.34 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 158549611 158549611 C T OR10X1 Missense_Mutation p.E27K 0.17 deleterious(0.03) possibly_damaging(0.773) TCGA-EE-A2GJ-06 1 158627344 158627344 C T SPTA1 Missense_Mutation p.E910K 0.40 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2GJ-06 1 158735991 158735991 G A OR6N1 Missense_Mutation p.S161F 0.23 tolerated(0.25) benign(0.008) TCGA-EE-A2GJ-06 1 158911876 158911876 C T PYHIN1 Missense_Mutation p.S230F 0.33 deleterious(0) benign(0.004) TCGA-EE-A2GJ-06 1 159033386 159033386 C T AIM2 Missense_Mutation p.E299K 0.16 tolerated(1) benign(0.025) TCGA-EE-A2GJ-06 1 159504995 159504995 T G OR10J5 Missense_Mutation p.E268A 0.24 deleterious(0.03) possibly_damaging(0.507) TCGA-EE-A2GJ-06 1 159683466 159683466 C T CRP Missense_Mutation p.G175E 0.22 tolerated(0.07) probably_damaging(0.982) TCGA-EE-A2GJ-06 1 159683467 159683467 C T CRP Missense_Mutation p.G175R 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 159785397 159785397 G A FCRL6 Missense_Mutation p.M417I 0.23 tolerated(0.56) benign(0) TCGA-EE-A2GJ-06 1 160523816 160523816 G A CD84 Missense_Mutation p.P170L 0.17 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GJ-06 1 160523817 160523817 G A CD84 Missense_Mutation p.P170S 0.17 tolerated(0.12) possibly_damaging(0.856) TCGA-EE-A2GJ-06 1 160920382 160920382 G A ITLN2 Silent p.F187F 0.37 TCGA-EE-A2GJ-06 1 161071905 161071905 A C PFDN2 Missense_Mutation p.V74G 0.14 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GJ-06 1 161642805 161642805 G A FCGR2B Silent p.E144E 0.28 TCGA-EE-A2GJ-06 1 16632330 16632330 G A FBXO42 Missense_Mutation p.P112L 0.33 deleterious(0.02) benign(0.261) TCGA-EE-A2GJ-06 1 167088601 167088601 C T DUSP27 Nonsense_Mutation p.Q185* 0.31 TCGA-EE-A2GJ-06 1 167096589 167096589 G A DUSP27 Missense_Mutation p.E741K 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 1 167097729 167097729 C T DUSP27 Missense_Mutation p.R1121W 0.41 deleterious(0.01) benign(0.043) TCGA-EE-A2GJ-06 1 168698368 168698368 C T DPT Missense_Mutation p.M15I 0.18 tolerated(0.06) benign(0) TCGA-EE-A2GJ-06 1 169529805 169529805 A C F5 Silent p.L191L 0.16 TCGA-EE-A2GJ-06 1 169833638 169833638 T A SCYL3 Missense_Mutation p.D276V 0.40 deleterious(0.01) benign(0.25) TCGA-EE-A2GJ-06 1 171080037 171080037 C T FMO3 Silent p.F242F 0.13 TCGA-EE-A2GJ-06 1 172292470 172292470 G C DNM3 Missense_Mutation p.G628A 0.42 tolerated(0.75) benign(0.001) TCGA-EE-A2GJ-06 1 173873052 173873052 C T SERPINC1 Missense_Mutation p.R457K 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GJ-06 1 174977763 174977763 C T CACYBP Missense_Mutation p.L151F 0.23 tolerated(0.1) benign(0.377) TCGA-EE-A2GJ-06 1 175113555 175113555 T C TNN Missense_Mutation p.F1210L 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A2GJ-06 1 175355281 175355281 G A TNR Missense_Mutation p.P555L 0.16 deleterious(0.03) possibly_damaging(0.855) TCGA-EE-A2GJ-06 1 175355282 175355282 G A TNR Missense_Mutation p.P555S 0.17 tolerated(0.21) possibly_damaging(0.505) TCGA-EE-A2GJ-06 1 175362936 175362936 C T TNR Missense_Mutation p.E446K 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 175375428 175375428 G A TNR Silent p.I141I 0.22 TCGA-EE-A2GJ-06 1 17588688 17588688 C T PADI3 Missense_Mutation p.L112F 0.19 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2GJ-06 1 176526002 176526002 G A PAPPA2 Missense_Mutation p.E182K 0.22 tolerated_low_confidence(0.35) benign(0.001) TCGA-EE-A2GJ-06 1 176760567 176760567 C T PAPPA2 Missense_Mutation p.P1657S 0.25 deleterious(0.03) benign(0.031) TCGA-EE-A2GJ-06 1 179562664 179562664 G A TDRD5 Missense_Mutation p.R101Q 0.12 tolerated(0.08) benign(0.083) TCGA-EE-A2GJ-06 1 180885453 180885453 G A KIAA1614 Missense_Mutation p.V72I 0.20 deleterious(0.04) benign(0.033) TCGA-EE-A2GJ-06 1 182026903 182026903 G A ZNF648 Silent p.F81F 0.19 TCGA-EE-A2GJ-06 1 182798104 182798104 T A NPL 3'UTR 0.25 TCGA-EE-A2GJ-06 1 190130018 190130018 C T BRINP3 Missense_Mutation p.E322K 0.45 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GJ-06 1 19181159 19181159 C T TAS1R2 Missense_Mutation p.A269T 0.38 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GJ-06 1 192153488 192153488 A C RGS18 Missense_Mutation p.H171P 0.24 tolerated(0.14) benign(0.292) TCGA-EE-A2GJ-06 1 193038753 193038753 C A TROVE2 Missense_Mutation p.P190H 0.19 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GJ-06 1 196227595 196227595 C T KCNT2 Nonsense_Mutation p.W980* 0.30 TCGA-EE-A2GJ-06 1 196762753 196762753 T C CFHR3 3'UTR 0.36 TCGA-EE-A2GJ-06 1 196794623 196794623 T C CFHR1 Silent p.F25F 0.11 TCGA-EE-A2GJ-06 1 196952101 196952101 G A CFHR5 Missense_Mutation p.E49K 0.38 tolerated(1) benign(0.008) TCGA-EE-A2GJ-06 1 196953238 196953238 G A CFHR5 Nonsense_Mutation p.W134* 0.08 TCGA-EE-A2GJ-06 1 196967406 196967406 G A CFHR5 Silent p.G373G 0.17 TCGA-EE-A2GJ-06 1 196973903 196973903 C T CFHR5 Silent p.F481F 0.46 TCGA-EE-A2GJ-06 1 197147566 197147566 G A ZBTB41 Missense_Mutation p.R585C 0.13 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GJ-06 1 197446994 197446994 G A CRB1 Missense_Mutation p.M1402I 0.35 tolerated(0.14) benign(0.001) TCGA-EE-A2GJ-06 1 198703464 198703464 G A PTPRC Silent p.R729R 0.20 TCGA-EE-A2GJ-06 1 20009900 20009900 G A TMCO4 Missense_Mutation p.A513V 0.23 tolerated(0.49) benign(0.002) TCGA-EE-A2GJ-06 1 200555350 200555350 T C KIF14 Silent p.L1040L 0.21 TCGA-EE-A2GJ-06 1 200960078 200960078 G A KIF21B Missense_Mutation p.P885L 0.41 deleterious(0.01) benign(0.165) TCGA-EE-A2GJ-06 1 202287257 202287257 C T LGR6 Missense_Mutation p.T609I 0.17 tolerated(0.15) benign(0.008) TCGA-EE-A2GJ-06 1 204438184 204438184 C A PIK3C2B Missense_Mutation p.L249F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-EE-A2GJ-06 1 204438185 204438185 A C PIK3C2B Missense_Mutation p.L249W 0.18 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-EE-A2GJ-06 1 207110943 207110943 C T PIGR Missense_Mutation p.G181D 0.18 tolerated(0.1) benign(0.294) TCGA-EE-A2GJ-06 1 207236759 207236759 C T PFKFB2 Missense_Mutation p.S148F 0.27 possibly_damaging(0.701) TCGA-EE-A2GJ-06 1 207269908 207269908 G A C4BPB Missense_Mutation p.E151K 0.21 tolerated(0.41) benign(0.015) TCGA-EE-A2GJ-06 1 207273196 207273196 G A C4BPB Silent p.K227K 0.15 TCGA-EE-A2GJ-06 1 207782974 207782974 A C CR1 Missense_Mutation p.H2079P 0.13 tolerated(0.31) possibly_damaging(0.62) TCGA-EE-A2GJ-06 1 209791870 209791870 C T LAMB3 Missense_Mutation p.D946N 0.36 deleterious(0.02) possibly_damaging(0.821) TCGA-EE-A2GJ-06 1 215824000 215824000 C T USH2A Silent p.G4759G 0.20 TCGA-EE-A2GJ-06 1 215847887 215847887 C A USH2A Missense_Mutation p.G4456C 0.38 probably_damaging(0.999) TCGA-EE-A2GJ-06 1 216052194 216052194 C A USH2A Missense_Mutation p.V2824F 0.17 benign(0.367) TCGA-EE-A2GJ-06 1 216052207 216052207 G A USH2A Silent p.T2819T 0.37 TCGA-EE-A2GJ-06 1 216424272 216424272 G A USH2A Nonsense_Mutation p.Q714* 0.20 TCGA-EE-A2GJ-06 1 216465577 216465577 G A USH2A Missense_Mutation p.P594S 0.16 probably_damaging(0.992) TCGA-EE-A2GJ-06 1 220162035 220162035 G A EPRS Missense_Mutation p.S891F 0.38 deleterious(0.01) benign(0.034) TCGA-EE-A2GJ-06 1 220344458 220344458 G A RAB3GAP2 Missense_Mutation p.S861F 0.30 deleterious(0.01) possibly_damaging(0.514) TCGA-EE-A2GJ-06 1 220971337 220971337 G A MARC1 Missense_Mutation p.G245E 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GJ-06 1 222826654 222826654 G C MIA3 Missense_Mutation p.D1432H 0.38 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2GJ-06 1 228210554 228210554 G A WNT3A Nonsense_Mutation p.W86* 0.32 TCGA-EE-A2GJ-06 1 228505630 228505630 C T OBSCN Silent p.A5586A 0.46 TCGA-EE-A2GJ-06 1 228505631 228505631 C T OBSCN Missense_Mutation p.P5587S 0.45 benign(0.055) TCGA-EE-A2GJ-06 1 22927217 22927217 G A EPHA8 Missense_Mutation p.A818T 0.20 deleterious(0) possibly_damaging(0.652) TCGA-EE-A2GJ-06 1 229794933 229794933 C T URB2 Silent p.F1488F 0.42 TCGA-EE-A2GJ-06 1 232539242 232539242 G A SIPA1L2 Missense_Mutation p.P1631L 0.21 tolerated(0.23) benign(0.063) TCGA-EE-A2GJ-06 1 232942489 232942489 A C MAP10 Missense_Mutation p.K574Q 0.17 tolerated(0.16) benign(0.155) TCGA-EE-A2GJ-06 1 232942560 232942560 G A MAP10 Silent p.G597G 0.26 TCGA-EE-A2GJ-06 1 232942561 232942561 G A MAP10 Missense_Mutation p.G598R 0.26 tolerated(0.08) possibly_damaging(0.878) TCGA-EE-A2GJ-06 1 233394846 233394846 C T PCNXL2 Silent p.K254K 0.17 TCGA-EE-A2GJ-06 1 233807177 233807177 C T KCNK1 Silent p.I304I 0.42 TCGA-EE-A2GJ-06 1 235621987 235621987 A C B3GALNT2 Missense_Mutation p.Y317D 0.45 deleterious(0.04) possibly_damaging(0.756) TCGA-EE-A2GJ-06 1 235826074 235826074 G A LYST 3'UTR 0.26 TCGA-EE-A2GJ-06 1 236735812 236735812 A G HEATR1 Silent p.S1202S 0.32 TCGA-EE-A2GJ-06 1 236898939 236898939 C T ACTN2 Silent p.I234I 0.13 TCGA-EE-A2GJ-06 1 237777871 237777871 G A RYR2 Missense_Mutation p.E1815K 0.39 benign(0.288) TCGA-EE-A2GJ-06 1 240071954 240071954 G A CHRM3 Silent p.L401L 0.33 TCGA-EE-A2GJ-06 1 240072236 240072236 G A CHRM3 Silent p.A495A 0.44 TCGA-EE-A2GJ-06 1 240370340 240370340 C T FMN2 Missense_Mutation p.S743L 0.17 unknown(0) TCGA-EE-A2GJ-06 1 240374416 240374416 G A FMN2 Missense_Mutation p.E1316K 0.34 possibly_damaging(0.72) TCGA-EE-A2GJ-06 1 240601433 240601433 C T FMN2 Silent p.F1661F 0.19 TCGA-EE-A2GJ-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.12 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 1 247587615 247587615 C T NLRP3 Silent p.I290I 0.24 TCGA-EE-A2GJ-06 1 247588113 247588113 G A NLRP3 Silent p.G456G 0.20 TCGA-EE-A2GJ-06 1 247694968 247694968 G A OR2C3 Silent p.V282V 0.20 TCGA-EE-A2GJ-06 1 247835454 247835454 C T OR13G1 Missense_Mutation p.G297E 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A2GJ-06 1 247836013 247836013 G A OR13G1 Missense_Mutation p.L111F 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GJ-06 1 247836293 247836293 C T OR13G1 Silent p.K17K 0.16 TCGA-EE-A2GJ-06 1 248031151 248031151 T G TRIM58 Missense_Mutation p.V251G 0.35 deleterious(0) possibly_damaging(0.461) TCGA-EE-A2GJ-06 1 248344172 248344172 G A OR2M2 Silent p.K295K 0.41 TCGA-EE-A2GJ-06 1 248366969 248366969 C T OR2M3 Silent p.F200F 0.19 TCGA-EE-A2GJ-06 1 248569764 248569764 C T OR2T1 Missense_Mutation p.L157F 0.20 tolerated(0.15) benign(0.029) TCGA-EE-A2GJ-06 1 248569979 248569979 C T OR2T1 Silent p.F228F 0.18 TCGA-EE-A2GJ-06 1 24861718 24861718 C T RCAN3 Missense_Mutation p.P226L 0.32 tolerated_low_confidence(0.7) benign(0.061) TCGA-EE-A2GJ-06 1 248685747 248685747 C T OR2G6 Missense_Mutation p.S267F 0.20 deleterious(0.04) benign(0.111) TCGA-EE-A2GJ-06 1 26515377 26515377 G A CNKSR1 Missense_Mutation p.R602Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 26524815 26524815 C T CATSPER4 Silent p.F239F 0.34 TCGA-EE-A2GJ-06 1 26752985 26752985 G A LIN28A 3'UTR 0.45 TCGA-EE-A2GJ-06 1 28477200 28477200 G A PTAFR Silent p.I111I 0.30 TCGA-EE-A2GJ-06 1 3397152 3397152 C T ARHGEF16 3'UTR 0.28 TCGA-EE-A2GJ-06 1 34192204 34192204 G A CSMD2 Silent p.S777S 0.31 TCGA-EE-A2GJ-06 1 34209001 34209001 G A CSMD2 Silent p.L645L 0.35 TCGA-EE-A2GJ-06 1 3425766 3425766 G A MEGF6 Silent p.F467F 0.40 TCGA-EE-A2GJ-06 1 35370128 35370128 G A DLGAP3 Missense_Mutation p.P286L 0.45 tolerated(0.13) benign(0.109) TCGA-EE-A2GJ-06 1 35851684 35851684 T C ZMYM4 Missense_Mutation p.V577A 0.36 deleterious(0.03) probably_damaging(0.952) TCGA-EE-A2GJ-06 1 36558106 36558122 AAGTGGTGTCTGAGCTA T ADPRHL2 Frame_Shift_Del p.E262Vfs*180 0.15 TCGA-EE-A2GJ-06 1 39797305 39797305 C T MACF1 Intron 0.34 TCGA-EE-A2GJ-06 1 39888178 39888178 A T MACF1 Missense_Mutation p.N3255Y 0.31 probably_damaging(0.993) TCGA-EE-A2GJ-06 1 40149819 40149819 G A HPCAL4 Silent p.F56F 0.32 TCGA-EE-A2GJ-06 1 43296255 43296255 C T ERMAP Intron 0.27 TCGA-EE-A2GJ-06 1 43392689 43392689 C T SLC2A1 3'UTR 0.34 TCGA-EE-A2GJ-06 1 44459600 44459600 A C CCDC24 Missense_Mutation p.N154T 0.36 deleterious(0) benign(0.399) TCGA-EE-A2GJ-06 1 44459601 44459601 C T CCDC24 Silent p.N154N 0.36 TCGA-EE-A2GJ-06 1 44468560 44468560 G A SLC6A9 Missense_Mutation p.L303F 0.33 tolerated(0.13) benign(0.327) TCGA-EE-A2GJ-06 1 44475699 44475699 G A SLC6A9 Missense_Mutation p.S159F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 45798075 45798075 G A MUTYH Missense_Mutation p.S256F 0.32 tolerated(0.71) benign(0.021) TCGA-EE-A2GJ-06 1 47264903 47264903 C T CYP4B1 Silent p.P50P 0.27 TCGA-EE-A2GJ-06 1 47533196 47533196 C T CYP4Z1 Missense_Mutation p.H12Y 0.30 tolerated(0.09) benign(0.253) TCGA-EE-A2GJ-06 1 47582349 47582349 G A CYP4Z1 Missense_Mutation p.E432K 0.36 deleterious(0.04) benign(0.055) TCGA-EE-A2GJ-06 1 47607252 47607252 C T CYP4A22 Missense_Mutation p.S116F 0.23 deleterious(0.04) possibly_damaging(0.615) TCGA-EE-A2GJ-06 1 55118967 55118967 C T MROH7 Missense_Mutation p.P123L 0.28 tolerated_low_confidence(0.06) benign(0.126) TCGA-EE-A2GJ-06 1 55266437 55266437 C T TTC22 Missense_Mutation p.E134K 0.33 tolerated(0.75) benign(0.021) TCGA-EE-A2GJ-06 1 57395135 57395135 G A C8B Missense_Mutation p.P573L 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GJ-06 1 57476931 57476931 G A DAB1 Missense_Mutation p.P487S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 57536707 57536707 G A DAB1 Missense_Mutation p.P196S 0.30 tolerated(0.05) possibly_damaging(0.747) TCGA-EE-A2GJ-06 1 6166825 6166825 C T CHD5 Missense_Mutation p.E1865K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 1 6166826 6166826 C A CHD5 Silent p.L1864L 0.20 TCGA-EE-A2GJ-06 1 62672782 62672782 C T L1TD1 Missense_Mutation p.P161L 0.26 tolerated(0.21) unknown(0) TCGA-EE-A2GJ-06 1 72076757 72076757 C T NEGR1 Missense_Mutation p.G247D 0.28 deleterious(0) benign(0.184) TCGA-EE-A2GJ-06 1 75055232 75055232 C T C1orf173 Intron 0.29 TCGA-EE-A2GJ-06 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.33 TCGA-EE-A2GJ-06 1 75107095 75107095 G A C1orf173 Missense_Mutation p.P122S 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 1 76397911 76397911 G A ASB17 Silent p.L22L 0.27 TCGA-EE-A2GJ-06 1 78309071 78309071 T C FAM73A Silent p.D325D 0.37 TCGA-EE-A2GJ-06 1 78401508 78401508 G A NEXN Missense_Mutation p.E418K 0.25 tolerated(0.16) benign(0.089) TCGA-EE-A2GJ-06 1 78959101 78959101 A T PTGFR Missense_Mutation p.I225F 0.26 tolerated(0.12) possibly_damaging(0.614) TCGA-EE-A2GJ-06 1 79102833 79102833 C T IFI44L Silent p.L331L 0.28 TCGA-EE-A2GJ-06 1 84986309 84986309 G T SPATA1 RNA 0.19 TCGA-EE-A2GJ-06 1 89322963 89322963 C T GTF2B Missense_Mutation p.R248K 0.37 tolerated(0.15) benign(0.297) TCGA-EE-A2GJ-06 1 90048491 90048491 G A LRRC8B Silent p.Q94Q 0.29 TCGA-EE-A2GJ-06 1 92200472 92200472 G A TGFBR3 Silent p.S143S 0.28 TCGA-EE-A2GJ-06 1 92200473 92200473 G A TGFBR3 Missense_Mutation p.S143F 0.29 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GJ-06 1 98058913 98058913 G A DPYD Missense_Mutation p.S330L 0.30 tolerated(0.15) benign(0.003) TCGA-EE-A2GJ-06 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 20 13134660 13134660 A G SPTLC3 Silent p.R430R 0.30 TCGA-EE-A2GJ-06 20 13845827 13845827 C T SEL1L2 Missense_Mutation p.E489K 0.28 tolerated_low_confidence(0.18) benign(0.107) TCGA-EE-A2GJ-06 20 19997995 19997995 G A NAA20 5'UTR 0.50 TCGA-EE-A2GJ-06 20 2375916 2375916 A C TGM6 Silent p.T86T 0.30 TCGA-EE-A2GJ-06 20 2796002 2796002 G A C20orf141 Missense_Mutation p.G58R 0.30 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A2GJ-06 20 35060247 35060247 G A DLGAP4 Missense_Mutation p.E43K 0.36 tolerated(0.73) possibly_damaging(0.589) TCGA-EE-A2GJ-06 20 35219884 35219884 C T TGIF2 3'UTR 0.33 TCGA-EE-A2GJ-06 20 35399459 35399459 T C DSN1 Missense_Mutation p.S58G 0.34 deleterious_low_confidence(0) benign(0.293) TCGA-EE-A2GJ-06 20 35526843 35526843 C T SAMHD1 Silent p.Q536Q 0.29 TCGA-EE-A2GJ-06 20 3683845 3683845 G A SIGLEC1 Silent p.N409N 0.38 TCGA-EE-A2GJ-06 20 36997662 36997662 G A LBP Missense_Mutation p.M335I 0.37 deleterious(0) possibly_damaging(0.461) TCGA-EE-A2GJ-06 20 37058370 37058370 G A SNORA71C RNA 0.40 TCGA-EE-A2GJ-06 20 43835680 43835680 G A SEMG1 5'UTR 0.29 TCGA-EE-A2GJ-06 20 44757560 44757560 C T CD40 Missense_Mutation p.P239S 0.29 tolerated(0.72) benign(0.033) TCGA-EE-A2GJ-06 20 45131369 45131369 C T ZNF334 Silent p.Q203Q 0.35 TCGA-EE-A2GJ-06 20 45633618 45633618 G A EYA2 Missense_Mutation p.A65T 0.27 tolerated(1) benign(0.004) TCGA-EE-A2GJ-06 20 48481306 48481306 C T SLC9A8 Missense_Mutation p.P311S 0.19 deleterious(0) possibly_damaging(0.77) TCGA-EE-A2GJ-06 20 48481307 48481307 C T SLC9A8 Missense_Mutation p.P311L 0.19 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GJ-06 20 5282768 5282768 C T PROKR2 Missense_Mutation p.G358E 0.22 tolerated(0.13) benign(0.104) TCGA-EE-A2GJ-06 20 54824259 54824259 C T MC3R Silent p.F120F 0.19 TCGA-EE-A2GJ-06 20 57429123 57429123 C T GNAS Missense_Mutation p.P268L 0.14 tolerated_low_confidence(0.05) unknown(0) TCGA-EE-A2GJ-06 20 57829627 57829627 C T ZNF831 Silent p.I1621I 0.25 TCGA-EE-A2GJ-06 20 60889937 60889937 A C LAMA5 Missense_Mutation p.V2705G 0.33 benign(0.092) TCGA-EE-A2GJ-06 20 61477088 61477088 C T TCFL5 Intron 0.20 TCGA-EE-A2GJ-06 20 62250759 62250759 G A GMEB2 5'UTR 0.23 TCGA-EE-A2GJ-06 20 62737326 62737326 C T NPBWR2 Missense_Mutation p.D287N 0.31 deleterious(0.04) possibly_damaging(0.883) TCGA-EE-A2GJ-06 20 8698405 8698405 G A PLCB1 Missense_Mutation p.E475K 0.36 tolerated(0.47) benign(0.001) TCGA-EE-A2GJ-06 20 9440329 9440329 C T PLCB4 Silent p.I1028I 0.20 TCGA-EE-A2GJ-06 20 9538374 9538374 C T PAK7 Missense_Mutation p.E542K 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 20 9560815 9560815 C T PAK7 Missense_Mutation p.E323K 0.29 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A2GJ-06 20 9624959 9624959 C T PAK7 Silent p.K6K 0.22 TCGA-EE-A2GJ-06 21 10934997 10934997 C T TPTE Missense_Mutation p.E266K 0.09 deleterious(0.02) possibly_damaging(0.775) TCGA-EE-A2GJ-06 21 10951345 10951345 G A TPTE Missense_Mutation p.P123S 0.18 tolerated(0.18) benign(0.046) TCGA-EE-A2GJ-06 21 14982936 14982936 G A POTED Missense_Mutation p.M129I 0.71 tolerated(0.23) benign(0.043) TCGA-EE-A2GJ-06 21 30338844 30338844 G A LTN1 Missense_Mutation p.P703S 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 21 31587917 31587917 C T CLDN8 Silent p.G109G 0.35 TCGA-EE-A2GJ-06 21 31720772 31720772 G A KRTAP23-1 Silent p.F51F 0.23 TCGA-EE-A2GJ-06 21 32410568 32410568 T G KRTAP19-8 3'UTR 0.27 TCGA-EE-A2GJ-06 21 32410572 32410572 C T KRTAP19-8 Silent p.%3D 0.28 TCGA-EE-A2GJ-06 21 34889366 34889366 G A GART Silent p.A679A 0.30 TCGA-EE-A2GJ-06 21 39774513 39774513 T A ERG Missense_Mutation p.Q220H 0.25 deleterious(0.02) possibly_damaging(0.758) TCGA-EE-A2GJ-06 21 43646014 43646014 G A ABCG1 Nonsense_Mutation p.W92* 0.29 TCGA-EE-A2GJ-06 21 43704787 43704787 C T ABCG1 Silent p.F284F 0.23 TCGA-EE-A2GJ-06 21 43783428 43783428 G A TFF1 Silent p.F58F 0.25 TCGA-EE-A2GJ-06 21 44000468 44000468 T G SLC37A1 Nonstop_Mutation p.*534Gext*32 0.20 TCGA-EE-A2GJ-06 21 46011572 46011572 G A KRTAP10-6 Missense_Mutation p.P265L 0.30 tolerated(0.29) unknown(0) TCGA-EE-A2GJ-06 21 46011573 46011573 G A KRTAP10-6 Missense_Mutation p.P265S 0.31 tolerated(0.35) unknown(0) TCGA-EE-A2GJ-06 21 46032718 46032718 C T KRTAP10-8 Missense_Mutation p.S234F 0.33 deleterious(0.01) unknown(0) TCGA-EE-A2GJ-06 21 46086702 46086702 G A KRTAP12-2 Silent p.C34C 0.33 TCGA-EE-A2GJ-06 21 46101782 46101782 C T KRTAP12-1 Missense_Mutation p.R86K 0.32 tolerated(0.11) benign(0.067) TCGA-EE-A2GJ-06 21 46936041 46936041 G A SLC19A1 Missense_Mutation p.S436F 0.36 tolerated(0.13) benign(0.001) TCGA-EE-A2GJ-06 21 47566215 47566215 G A FTCD Silent p.S311S 0.33 TCGA-EE-A2GJ-06 22 18073068 18073068 G A SLC25A18 3'UTR 0.37 TCGA-EE-A2GJ-06 22 22322018 22322018 G A TOP3B Missense_Mutation p.A270V 0.29 deleterious(0.04) possibly_damaging(0.517) TCGA-EE-A2GJ-06 22 24036680 24036680 G A RGL4 Intron 0.50 TCGA-EE-A2GJ-06 22 24439440 24439440 C T CABIN1 Silent p.I140I 0.30 TCGA-EE-A2GJ-06 22 26231385 26231385 C T MYO18B Silent p.F1061F 0.35 TCGA-EE-A2GJ-06 22 26294333 26294333 G A MYO18B Silent p.R1576R 0.30 TCGA-EE-A2GJ-06 22 26299723 26299723 G A MYO18B Nonsense_Mutation p.W1691* 0.28 TCGA-EE-A2GJ-06 22 30394825 30394825 C T MTMR3 Missense_Mutation p.S179F 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 22 30812060 30812060 C T SEC14L2 Missense_Mutation p.P299S 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 22 32631037 32631037 G A SLC5A4 Silent p.Y236Y 0.35 TCGA-EE-A2GJ-06 22 32853264 32853264 C T BPIFC Missense_Mutation p.R37K 0.17 tolerated(0.98) benign(0.011) TCGA-EE-A2GJ-06 22 37395952 37395952 G A TEX33 Missense_Mutation p.P188L 0.39 deleterious(0) benign(0.004) TCGA-EE-A2GJ-06 22 38421635 38421635 G A POLR2F Missense_Mutation p.A115T 0.24 tolerated_low_confidence(0.2) benign(0.007) TCGA-EE-A2GJ-06 22 41735092 41735092 C T ZC3H7B Missense_Mutation p.A238V 0.35 tolerated(0.52) benign(0.012) TCGA-EE-A2GJ-06 22 42280955 42280955 C T SREBF2 Silent p.I716I 0.25 TCGA-EE-A2GJ-06 22 42536661 42536661 G A NDUFA6-AS1 3'Flank 0.53 TCGA-EE-A2GJ-06 22 43272197 43272197 G A PACSIN2 Missense_Mutation p.R432W 0.27 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GJ-06 22 43272198 43272198 G T PACSIN2 Silent p.V431V 0.27 TCGA-EE-A2GJ-06 22 44234753 44234753 C T SULT4A1 Missense_Mutation p.D168N 0.17 tolerated(0.58) benign(0.038) TCGA-EE-A2GJ-06 22 44514984 44514984 G A PARVB Missense_Mutation p.D147N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 22 45937138 45937138 C T FBLN1 Missense_Mutation p.P318S 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A2GJ-06 22 46930693 46930693 G A CELSR1 Missense_Mutation p.S792F 0.48 deleterious(0) probably_damaging(0.929) TCGA-EE-A2GJ-06 22 47058961 47058961 C T GRAMD4 Missense_Mutation p.S164L 0.38 tolerated(0.39) benign(0.004) TCGA-EE-A2GJ-06 22 51117010 51117010 C T SHANK3 Intron 0.50 TCGA-EE-A2GJ-06 2 102490542 102490542 A C MAP4K4 Splice_Site p.X879_splice 0.68 TCGA-EE-A2GJ-06 2 103281594 103281594 G A SLC9A2 Missense_Mutation p.M263I 0.61 deleterious(0.01) benign(0.376) TCGA-EE-A2GJ-06 2 107029659 107029659 A C RGPD3 Missense_Mutation p.V1716G 0.62 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-EE-A2GJ-06 2 107460333 107460333 T C ST6GAL2 Missense_Mutation p.N34S 0.66 benign(0.017) TCGA-EE-A2GJ-06 2 108488331 108488331 G A RGPD4 Missense_Mutation p.G1291R 0.66 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GJ-06 2 108489210 108489210 G A RGPD4 Missense_Mutation p.E1584K 0.60 tolerated(0.3) benign(0.141) TCGA-EE-A2GJ-06 2 113299928 113299928 G A POLR1B 5'UTR 0.75 TCGA-EE-A2GJ-06 2 1133456 1133456 T C SNTG2 Silent p.V124V 0.58 TCGA-EE-A2GJ-06 2 120734688 120734688 C T PTPN4 3'UTR 0.70 TCGA-EE-A2GJ-06 2 121991770 121991770 C T TFCP2L1 Silent p.R365R 0.73 TCGA-EE-A2GJ-06 2 131459903 131459903 C T FAR2P3 RNA 0.70 TCGA-EE-A2GJ-06 2 131486883 131486883 C T GPR148 Silent p.F53F 0.64 TCGA-EE-A2GJ-06 2 131798931 131798931 G A ARHGEF4 Missense_Mutation p.M411I 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 2 131976359 131976359 C T POTEE Silent p.F128F 0.63 TCGA-EE-A2GJ-06 2 132021104 132021104 G A POTEE Silent p.K692K 0.48 TCGA-EE-A2GJ-06 2 132276718 132276718 C T AC093838.4 RNA 0.69 TCGA-EE-A2GJ-06 2 136575460 136575460 G A LCT Silent p.F386F 0.73 TCGA-EE-A2GJ-06 2 138413199 138413199 C T THSD7B Silent p.I1361I 0.65 TCGA-EE-A2GJ-06 2 142567858 142567858 A G LRP1B Silent p.S65S 0.61 TCGA-EE-A2GJ-06 2 152410459 152410459 C T NEB Silent p.K6503K 0.63 TCGA-EE-A2GJ-06 2 15770985 15770985 C T DDX1 Silent p.F726F 0.63 TCGA-EE-A2GJ-06 2 163044759 163044759 A C FAP Silent p.A578A 0.70 TCGA-EE-A2GJ-06 2 165970408 165970408 C T SCN3A Missense_Mutation p.R1196Q 0.66 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 2 167262489 167262489 G A SCN7A Silent p.F1550F 0.67 TCGA-EE-A2GJ-06 2 170029621 170029621 C T LRP2 Missense_Mutation p.D3710N 0.67 probably_damaging(1) TCGA-EE-A2GJ-06 2 179464508 179464508 T C TTN Missense_Mutation p.K18707R 0.65 TCGA-EE-A2GJ-06 2 179585223 179585223 C T TTN Missense_Mutation p.D7756N 0.67 TCGA-EE-A2GJ-06 2 179590142 179590142 T G TTN Missense_Mutation p.K6930T 0.67 TCGA-EE-A2GJ-06 2 179590143 179590143 T G TTN Missense_Mutation p.K6930Q 0.72 TCGA-EE-A2GJ-06 2 179594491 179594491 G A TTN Silent p.F6163F 0.65 TCGA-EE-A2GJ-06 2 179597667 179597667 G A TTN Silent p.A5412A 0.67 TCGA-EE-A2GJ-06 2 179597678 179597678 C T TTN Missense_Mutation p.E5409K 0.68 TCGA-EE-A2GJ-06 2 179610475 179610475 C T TTN Intron 0.66 TCGA-EE-A2GJ-06 2 179714852 179714852 A C CCDC141 Missense_Mutation p.V1094G 0.54 deleterious(0) probably_damaging(0.915) TCGA-EE-A2GJ-06 2 18113419 18113419 G A KCNS3 Missense_Mutation p.A382T 0.66 tolerated(0.14) benign(0.174) TCGA-EE-A2GJ-06 2 201468806 201468806 C T AOX1 Missense_Mutation p.P219S 0.57 deleterious(0) probably_damaging(0.931) TCGA-EE-A2GJ-06 2 203693702 203693702 C T ICA1L Missense_Mutation p.D11N 0.65 tolerated(0.13) possibly_damaging(0.632) TCGA-EE-A2GJ-06 2 207172424 207172424 C G ZDBF2 Missense_Mutation p.L1058V 0.64 tolerated(0.15) benign(0.013) TCGA-EE-A2GJ-06 2 210557362 210557362 C T MAP2 Silent p.A156A 0.60 TCGA-EE-A2GJ-06 2 21224685 21224685 C T APOB Missense_Mutation p.E4537K 0.65 benign(0.011) TCGA-EE-A2GJ-06 2 21229895 21229895 C T APOB Missense_Mutation p.S3282N 0.68 benign(0.008) TCGA-EE-A2GJ-06 2 21230801 21230801 G A APOB Missense_Mutation p.S2980F 0.67 benign(0) TCGA-EE-A2GJ-06 2 21250807 21250807 T A APOB Nonsense_Mutation p.K654* 0.67 TCGA-EE-A2GJ-06 2 212812239 212812239 C T ERBB4 Missense_Mutation p.D113N 0.70 tolerated(0.54) benign(0.007) TCGA-EE-A2GJ-06 2 217297570 217297570 C T SMARCAL1 Silent p.S488S 0.60 TCGA-EE-A2GJ-06 2 219487534 219487534 G A PLCD4 Silent p.Q235Q 0.76 TCGA-EE-A2GJ-06 2 220496989 220496989 C T SLC4A3 Silent p.F349F 0.61 TCGA-EE-A2GJ-06 2 228012173 228012173 C T COL4A4 Missense_Mutation p.M9I 0.68 benign(0.005) TCGA-EE-A2GJ-06 2 228881727 228881727 G A SPHKAP Silent p.S1281S 0.63 TCGA-EE-A2GJ-06 2 231103041 231103041 G A SP140 Silent p.R117R 0.68 TCGA-EE-A2GJ-06 2 231256831 231256831 G A SP140L Missense_Mutation p.D332N 0.72 tolerated(0.29) possibly_damaging(0.55) TCGA-EE-A2GJ-06 2 236706445 236706445 C T AGAP1 Missense_Mutation p.S239F 0.65 tolerated(0.18) probably_damaging(0.992) TCGA-EE-A2GJ-06 2 238253051 238253051 C T COL6A3 Missense_Mutation p.G2537E 0.74 unknown(0) TCGA-EE-A2GJ-06 2 241689893 241689893 T G KIF1A Missense_Mutation p.K977T 0.55 tolerated(0.06) possibly_damaging(0.679) TCGA-EE-A2GJ-06 2 27324160 27324160 C T CGREF1 Silent p.V313V 0.63 TCGA-EE-A2GJ-06 2 27801308 27801308 A C C2orf16 Missense_Mutation p.E623D 0.62 tolerated(0.44) benign(0.01) TCGA-EE-A2GJ-06 2 29498286 29498286 G A ALK Silent p.L632L 0.63 TCGA-EE-A2GJ-06 2 30379533 30379533 C T YPEL5 Missense_Mutation p.L6F 0.62 tolerated(0.16) benign(0.314) TCGA-EE-A2GJ-06 2 36749303 36749303 G A CRIM1 Missense_Mutation p.D759N 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GJ-06 2 44079832 44079832 G A ABCG8 Silent p.R263R 0.63 TCGA-EE-A2GJ-06 2 44102518 44102518 G A ABCG8 Silent p.G574G 0.65 TCGA-EE-A2GJ-06 2 46237593 46237593 G A PRKCE Silent p.R458R 0.69 TCGA-EE-A2GJ-06 2 60688537 60688537 C T BCL11A Missense_Mutation p.E504K 0.66 tolerated(0.27) benign(0.292) TCGA-EE-A2GJ-06 2 66796123 66796123 A C MEIS1 Intron 0.64 TCGA-EE-A2GJ-06 2 71896816 71896816 G A DYSF Nonsense_Mutation p.W1908* 0.63 TCGA-EE-A2GJ-06 2 85808710 85808710 C G VAMP8 Missense_Mutation p.F58L 0.06 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GJ-06 3 108572544 108572544 G A TRAT1 Silent p.Q127Q 0.42 TCGA-EE-A2GJ-06 3 111887770 111887770 C T SLC9C1 Missense_Mutation p.R1064Q 0.53 tolerated(0.18) benign(0.164) TCGA-EE-A2GJ-06 3 119536041 119536041 C T NR1I2 Silent p.F468F 0.56 TCGA-EE-A2GJ-06 3 121340695 121340695 C T FBXO40 Missense_Mutation p.S140F 0.47 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GJ-06 3 121643803 121643803 C T SLC15A2 Silent p.P349P 0.43 TCGA-EE-A2GJ-06 3 122182787 122182787 A C KPNA1 Splice_Site p.X113_splice 0.47 TCGA-EE-A2GJ-06 3 124174098 124174098 G A KALRN Silent p.T1207T 0.47 TCGA-EE-A2GJ-06 3 124951260 124951260 G A ZNF148 Silent p.P770P 0.59 TCGA-EE-A2GJ-06 3 126201175 126201175 A C UROC1 3'UTR 0.52 TCGA-EE-A2GJ-06 3 129810956 129810956 G A RP11-93K22.13 Intron 0.46 TCGA-EE-A2GJ-06 3 1337488 1337488 G A CNTN6 Missense_Mutation p.G220S 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GJ-06 3 13543387 13543387 T G HDAC11 Missense_Mutation p.V169G 0.27 tolerated(0.28) benign(0.405) TCGA-EE-A2GJ-06 3 138251411 138251411 A G CEP70 Silent p.L213L 0.45 TCGA-EE-A2GJ-06 3 141499223 141499223 C T GRK7 Missense_Mutation p.A207V 0.55 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A2GJ-06 3 142274762 142274762 G A ATR Silent p.F766F 0.55 TCGA-EE-A2GJ-06 3 146159552 146159552 C T PLSCR2 3'UTR 0.44 TCGA-EE-A2GJ-06 3 14939084 14939084 G A FGD5 Silent p.R939R 0.44 TCGA-EE-A2GJ-06 3 160968706 160968706 T C NMD3 3'UTR 0.46 TCGA-EE-A2GJ-06 3 161147202 161147202 G A RP11-3P17.4 RNA 0.55 TCGA-EE-A2GJ-06 3 169664219 169664219 C T RP11-379K17.4 RNA 0.57 TCGA-EE-A2GJ-06 3 17052619 17052619 A C PLCL2 Missense_Mutation p.Q468P 0.32 tolerated(0.07) possibly_damaging(0.625) TCGA-EE-A2GJ-06 3 170884950 170884950 C T TNIK Missense_Mutation p.E295K 0.38 deleterious(0) unknown(0) TCGA-EE-A2GJ-06 3 17202628 17202628 G A TBC1D5 Missense_Mutation p.R761C 0.20 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A2GJ-06 3 184102390 184102390 C T CHRD Silent p.F502F 0.54 TCGA-EE-A2GJ-06 3 187003811 187003811 G A MASP1 Silent p.S13S 0.41 TCGA-EE-A2GJ-06 3 19295239 19295239 G A KCNH8 Missense_Mutation p.R57Q 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GJ-06 3 193051659 193051659 G A ATP13A5 Silent p.I384I 0.63 TCGA-EE-A2GJ-06 3 193153515 193153515 G A ATP13A4 Silent p.L897L 0.41 TCGA-EE-A2GJ-06 3 21467032 21467032 G A ZNF385D Silent p.H268H 0.31 TCGA-EE-A2GJ-06 3 31621363 31621363 A G STT3B Missense_Mutation p.I162M 0.36 deleterious(0.04) possibly_damaging(0.756) TCGA-EE-A2GJ-06 3 35756948 35756948 A G ARPP21 Silent p.E271E 0.24 TCGA-EE-A2GJ-06 3 37366306 37366306 C T GOLGA4 Nonsense_Mutation p.Q999* 0.31 TCGA-EE-A2GJ-06 3 38035811 38035811 G A VILL Silent p.G65G 0.34 TCGA-EE-A2GJ-06 3 38167134 38167134 G A ACAA1 Missense_Mutation p.A374V 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 3 38316508 38316508 G A SLC22A13 Silent p.R222R 0.33 TCGA-EE-A2GJ-06 3 38592926 38592926 A C SCN5A Missense_Mutation p.L1646R 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 3 38627507 38627507 G A SCN5A Missense_Mutation p.S821L 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 3 38889207 38889207 G A SCN11A Nonsense_Mutation p.Q1452* 0.35 TCGA-EE-A2GJ-06 3 38941523 38941523 G A SCN11A Silent p.I628I 0.36 TCGA-EE-A2GJ-06 3 38949510 38949510 G A SCN11A Missense_Mutation p.S468F 0.22 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GJ-06 3 38962691 38962691 C T SCN11A Silent p.V256V 0.34 TCGA-EE-A2GJ-06 3 39229895 39229895 G A XIRP1 Silent p.L348L 0.36 TCGA-EE-A2GJ-06 3 42299711 42299711 C T CCK Missense_Mutation p.R76Q 0.37 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2GJ-06 3 42733442 42733442 T G KLHL40 Missense_Mutation p.F608C 0.39 tolerated(0.94) benign(0.004) TCGA-EE-A2GJ-06 3 43122588 43122588 G A POMGNT2 Silent p.F112F 0.33 TCGA-EE-A2GJ-06 3 44491960 44491960 A T ZNF445 Missense_Mutation p.Y267N 0.42 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2GJ-06 3 45988619 45988620 AA - CXCR6 Frame_Shift_Del p.K216Nfs*68 0.25 TCGA-EE-A2GJ-06 3 46062573 46062573 G A XCR1 Silent p.F289F 0.38 TCGA-EE-A2GJ-06 3 46718189 46718189 G A ALS2CL Silent p.I657I 0.34 TCGA-EE-A2GJ-06 3 48626092 48626092 G A COL7A1 Missense_Mutation p.S857F 0.32 unknown(0) TCGA-EE-A2GJ-06 3 49149150 49149150 G A USP19 Silent p.S998S 0.31 TCGA-EE-A2GJ-06 3 49159424 49159424 G C LAMB2 Missense_Mutation p.R1626G 0.35 deleterious(0.02) benign(0.038) TCGA-EE-A2GJ-06 3 49466624 49466624 G A NICN1 Nonsense_Mutation p.Q17* 0.42 TCGA-EE-A2GJ-06 3 49759379 49759379 G A GMPPB Silent p.L324L 0.32 TCGA-EE-A2GJ-06 3 49949036 49949036 G A MON1A Missense_Mutation p.S276F 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GJ-06 3 51430285 51430285 C T RBM15B Silent p.L485L 0.24 TCGA-EE-A2GJ-06 3 51718650 51718650 G A TEX264 Silent p.K160K 0.32 TCGA-EE-A2GJ-06 3 52821082 52821082 G A ITIH1 Missense_Mutation p.G619S 0.29 tolerated(0.28) benign(0.048) TCGA-EE-A2GJ-06 3 53159945 53159945 G A RFT1 Silent p.I43I 0.29 TCGA-EE-A2GJ-06 3 53381605 53381605 C T DCP1A 5'UTR 0.36 TCGA-EE-A2GJ-06 3 53890992 53890992 C T IL17RB Silent p.I217I 0.32 TCGA-EE-A2GJ-06 3 56207483 56207483 G A ERC2 Silent p.I380I 0.37 TCGA-EE-A2GJ-06 3 58178429 58178429 C T DNASE1L3 Silent p.K301K 0.26 TCGA-EE-A2GJ-06 3 64589969 64589969 G A ADAMTS9 Silent p.A1171A 0.28 TCGA-EE-A2GJ-06 3 64599113 64599113 C T ADAMTS9 Missense_Mutation p.D1088N 0.31 deleterious(0.03) benign(0.257) TCGA-EE-A2GJ-06 3 71008362 71008362 C T FOXP1 3'UTR 0.29 TCGA-EE-A2GJ-06 3 73433735 73433735 G A PDZRN3 Missense_Mutation p.P661L 0.33 tolerated(0.19) benign(0.065) TCGA-EE-A2GJ-06 3 74411041 74411041 C T CNTN3 Missense_Mutation p.R455K 0.40 deleterious(0) possibly_damaging(0.557) TCGA-EE-A2GJ-06 3 7494349 7494349 C T GRM7 Silent p.F410F 0.33 TCGA-EE-A2GJ-06 3 77542460 77542460 C T ROBO2 Missense_Mutation p.R261C 0.32 tolerated(0.06) possibly_damaging(0.898) TCGA-EE-A2GJ-06 3 78710396 78710396 G A ROBO1 Nonsense_Mutation p.Q702* 0.35 TCGA-EE-A2GJ-06 3 97686473 97686473 A T MINA 5'UTR 0.67 TCGA-EE-A2GJ-06 3 9776317 9776317 C T BRPF1 Missense_Mutation p.H165Y 0.28 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A2GJ-06 3 99513871 99513871 G A COL8A1 Missense_Mutation p.E376K 0.32 deleterious(0.05) unknown(0) TCGA-EE-A2GJ-06 4 100237235 100237235 C T ADH1B Silent p.R129R 0.28 TCGA-EE-A2GJ-06 4 100348958 100348958 C T ADH7 Missense_Mutation p.G199E 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 4 100349108 100349108 C T ADH7 Missense_Mutation p.R149K 0.30 deleterious(0.01) possibly_damaging(0.779) TCGA-EE-A2GJ-06 4 103504093 103504093 C T NFKB1 Silent p.S302S 0.33 TCGA-EE-A2GJ-06 4 104510795 104510795 C A TACR3 3'UTR 0.36 TCGA-EE-A2GJ-06 4 114277367 114277367 A G ANK2 Silent p.S2531S 0.29 TCGA-EE-A2GJ-06 4 114823887 114823887 G A ARSJ Missense_Mutation p.A448V 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GJ-06 4 119810138 119810138 C T SYNPO2 5'UTR 0.31 TCGA-EE-A2GJ-06 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.33 TCGA-EE-A2GJ-06 4 128627833 128627833 C T INTU Silent p.F660F 0.30 TCGA-EE-A2GJ-06 4 129764136 129764136 C T JADE1 Silent p.S27S 0.29 TCGA-EE-A2GJ-06 4 13602925 13602925 C T BOD1L1 Missense_Mutation p.G1867R 0.31 probably_damaging(0.973) TCGA-EE-A2GJ-06 4 139093073 139093073 C T SLC7A11 3'UTR 0.23 TCGA-EE-A2GJ-06 4 139993183 139993183 A C ELF2 Intron 0.23 TCGA-EE-A2GJ-06 4 146770626 146770626 G A ZNF827 Missense_Mutation p.P690L 0.31 deleterious(0) possibly_damaging(0.74) TCGA-EE-A2GJ-06 4 154625141 154625141 C T TLR2 Missense_Mutation p.S361L 0.32 deleterious(0.02) possibly_damaging(0.699) TCGA-EE-A2GJ-06 4 155155886 155155886 C T DCHS2 Silent p.P2851P 0.31 TCGA-EE-A2GJ-06 4 15558949 15558949 A G CC2D2A Missense_Mutation p.Y883C 0.23 tolerated(0.16) benign(0.029) TCGA-EE-A2GJ-06 4 164272412 164272412 C T NPY5R Silent p.F329F 0.33 TCGA-EE-A2GJ-06 4 16510176 16510176 A G LDB2 Silent p.S291S 0.36 TCGA-EE-A2GJ-06 4 16510279 16510279 C T LDB2 Missense_Mutation p.R257Q 0.30 deleterious(0.01) benign(0.135) TCGA-EE-A2GJ-06 4 169189063 169189063 C T DDX60 Missense_Mutation p.R953K 0.30 tolerated(0.88) benign(0.002) TCGA-EE-A2GJ-06 4 169227682 169227682 C T DDX60 Missense_Mutation p.D152N 0.32 tolerated(0.31) benign(0.004) TCGA-EE-A2GJ-06 4 169337923 169337923 C T DDX60L Missense_Mutation p.G879E 0.38 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A2GJ-06 4 169632881 169632881 G A PALLD Missense_Mutation p.E591K 0.30 tolerated(0.1) benign(0.003) TCGA-EE-A2GJ-06 4 177608419 177608419 C T VEGFC Missense_Mutation p.G356E 0.28 tolerated(0.89) benign(0.015) TCGA-EE-A2GJ-06 4 183713577 183713577 C T TENM3 Missense_Mutation p.P1918S 0.27 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2GJ-06 4 183713578 183713578 C T TENM3 Missense_Mutation p.P1918L 0.26 deleterious(0) probably_damaging(0.913) TCGA-EE-A2GJ-06 4 187153328 187153328 G T KLKB1 Missense_Mutation p.V36L 0.28 tolerated(0.47) benign(0.034) TCGA-EE-A2GJ-06 4 187157998 187157998 T G KLKB1 Missense_Mutation p.V131G 0.27 deleterious(0.02) benign(0.392) TCGA-EE-A2GJ-06 4 187197030 187197030 C T F11 Missense_Mutation p.S192F 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GJ-06 4 187454897 187454897 C T MTNR1A Nonsense_Mutation p.W333* 0.36 TCGA-EE-A2GJ-06 4 188924639 188924639 C T ZFP42 Silent p.F226F 0.37 TCGA-EE-A2GJ-06 4 2010584 2010584 C T NELFA Missense_Mutation p.A46T 0.28 tolerated(0.36) benign(0.002) TCGA-EE-A2GJ-06 4 2010585 2010585 C T NELFA Silent p.T45T 0.27 TCGA-EE-A2GJ-06 4 20611778 20611778 C G SLIT2 Missense_Mutation p.L1279V 0.28 deleterious(0) possibly_damaging(0.658) TCGA-EE-A2GJ-06 4 36069821 36069821 C T ARAP2 Missense_Mutation p.R1608K 0.31 tolerated(0.54) benign(0.005) TCGA-EE-A2GJ-06 4 42403192 42403192 C T SHISA3 Silent p.P147P 0.25 TCGA-EE-A2GJ-06 4 4281220 4281220 G A LYAR Missense_Mutation p.S128F 0.33 deleterious(0) benign(0.373) TCGA-EE-A2GJ-06 4 42965114 42965114 C T GRXCR1 Missense_Mutation p.S197F 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 4 47644036 47644036 G A CORIN Missense_Mutation p.S700F 0.37 deleterious(0.03) benign(0.365) TCGA-EE-A2GJ-06 4 47953412 47953412 G A CNGA1 Missense_Mutation p.S134F 0.09 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-EE-A2GJ-06 4 52861055 52861055 G A LRRC66 Silent p.F711F 0.40 TCGA-EE-A2GJ-06 4 54327039 54327039 T G LNX1 3'UTR 0.30 TCGA-EE-A2GJ-06 4 55955585 55955585 T C KDR Silent p.K1120K 0.39 TCGA-EE-A2GJ-06 4 5961113 5961113 A G C4orf50 Silent p.L748L 0.32 TCGA-EE-A2GJ-06 4 69334627 69334627 A T TMPRSS11E Missense_Mutation p.R97W 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2GJ-06 4 69334628 69334628 G A TMPRSS11E Missense_Mutation p.R97K 0.27 tolerated(0.63) benign(0.032) TCGA-EE-A2GJ-06 4 70079780 70079780 C T UGT2B11 Missense_Mutation p.D221N 0.35 tolerated(0.05) benign(0.021) TCGA-EE-A2GJ-06 4 70148315 70148315 C T UGT2B28 Missense_Mutation p.P269S 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 4 70361321 70361321 C A UGT2B4 Nonsense_Mutation p.E87* 0.33 TCGA-EE-A2GJ-06 4 70592812 70592812 C T SULT1B1 Silent p.E295E 0.33 TCGA-EE-A2GJ-06 4 71347045 71347045 C T MUC7 Missense_Mutation p.P195L 0.28 deleterious(0.01) unknown(0) TCGA-EE-A2GJ-06 4 71508455 71508455 G A ENAM Missense_Mutation p.E438K 0.32 tolerated(0.08) possibly_damaging(0.767) TCGA-EE-A2GJ-06 4 74005789 74005789 G A ANKRD17 Silent p.I848I 0.32 TCGA-EE-A2GJ-06 4 74279174 74279174 C T ALB Missense_Mutation p.S294L 0.31 tolerated(0.31) benign(0.048) TCGA-EE-A2GJ-06 4 7435605 7435605 C T PSAPL1 Silent p.K334K 0.27 TCGA-EE-A2GJ-06 4 76794405 76794405 G A PPEF2 Nonsense_Mutation p.R461* 0.31 TCGA-EE-A2GJ-06 4 79399128 79399128 G A FRAS1 Missense_Mutation p.E2671K 0.27 probably_damaging(0.967) TCGA-EE-A2GJ-06 4 79442682 79442682 C T FRAS1 Nonsense_Mutation p.Q3516* 0.24 TCGA-EE-A2GJ-06 4 79503353 79503353 G A ANXA3 Missense_Mutation p.G74D 0.34 deleterious(0.04) possibly_damaging(0.476) TCGA-EE-A2GJ-06 4 81966934 81966934 C T BMP3 Missense_Mutation p.S120L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 4 88116516 88116516 C T KLHL8 Missense_Mutation p.R59Q 0.25 tolerated(1) benign(0.002) TCGA-EE-A2GJ-06 4 96137344 96137344 G A UNC5C Missense_Mutation p.P555L 0.14 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GJ-06 4 9783893 9783893 C T DRD5 Silent p.I80I 0.29 TCGA-EE-A2GJ-06 5 1052357 1052357 G A SLC12A7 3'UTR 0.59 TCGA-EE-A2GJ-06 5 111506681 111506681 G A EPB41L4A Missense_Mutation p.P544L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 5 115173368 115173368 T C ATG12 Missense_Mutation p.D86G 0.62 deleterious(0.05) benign(0.036) TCGA-EE-A2GJ-06 5 121187647 121187647 G A FTMT 5'Flank 0.51 TCGA-EE-A2GJ-06 5 121758943 121758943 G A SNCAIP Missense_Mutation p.V171M 0.49 deleterious(0) benign(0.025) TCGA-EE-A2GJ-06 5 130769216 130769216 G A RAPGEF6 Missense_Mutation p.S1302F 0.47 tolerated_low_confidence(0.71) benign(0.002) TCGA-EE-A2GJ-06 5 132552948 132552948 G A FSTL4 Silent p.V527V 0.54 TCGA-EE-A2GJ-06 5 13776579 13776579 G A DNAH5 Silent p.F3114F 0.71 TCGA-EE-A2GJ-06 5 140024645 140024645 C T TMCO6 Missense_Mutation p.R482C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 5 140475885 140475885 C T PCDHB2 Missense_Mutation p.S504F 0.49 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2GJ-06 5 140501933 140501933 G A PCDHB4 Missense_Mutation p.G118E 0.48 deleterious_low_confidence(0.01) benign(0.381) TCGA-EE-A2GJ-06 5 140514947 140514947 T C PCDHB5 5'UTR 0.52 TCGA-EE-A2GJ-06 5 140739823 140739823 C T PCDHGB2 Silent p.L41L 0.50 TCGA-EE-A2GJ-06 5 147469129 147469129 C T SPINK5 Missense_Mutation p.L183F 0.53 tolerated(0.44) benign(0.222) TCGA-EE-A2GJ-06 5 150718687 150718687 G A SLC36A2 Silent p.F153F 0.49 TCGA-EE-A2GJ-06 5 154394968 154394968 C T KIF4B Missense_Mutation p.L517F 0.44 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GJ-06 5 156378700 156378700 G A TIMD4 Missense_Mutation p.P168S 0.03 tolerated(0.09) possibly_damaging(0.634) TCGA-EE-A2GJ-06 5 157065624 157065624 C T SOX30 Silent p.Q498Q 0.13 TCGA-EE-A2GJ-06 5 15936668 15936668 C T FBXL7 Silent p.F283F 0.57 TCGA-EE-A2GJ-06 5 161119131 161119131 G A GABRA6 Silent p.R337R 0.56 TCGA-EE-A2GJ-06 5 170610355 170610355 T G RANBP17 Missense_Mutation p.S653R 0.34 deleterious(0.04) benign(0.039) TCGA-EE-A2GJ-06 5 170640706 170640706 C T RANBP17 Missense_Mutation p.P768L 0.54 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GJ-06 5 172517345 172517345 C T CREBRF Missense_Mutation p.P55S 0.47 tolerated_low_confidence(0.28) benign(0.009) TCGA-EE-A2GJ-06 5 177151321 177151321 C T FAM153A Missense_Mutation p.E272K 0.49 tolerated_low_confidence(0.07) possibly_damaging(0.714) TCGA-EE-A2GJ-06 5 177676175 177676175 C T COL23A1 Silent p.E364E 0.25 TCGA-EE-A2GJ-06 5 177690292 177690292 G A COL23A1 Missense_Mutation p.P186S 0.46 deleterious(0.03) unknown(0) TCGA-EE-A2GJ-06 5 178392301 178392301 C T ZNF454 Missense_Mutation p.P299L 0.23 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GJ-06 5 179315211 179315211 G A TBC1D9B Silent p.D382D 0.17 TCGA-EE-A2GJ-06 5 180056974 180056974 G A FLT4 Silent p.F215F 0.34 TCGA-EE-A2GJ-06 5 180415998 180415998 C T BTNL3 5'UTR 0.26 TCGA-EE-A2GJ-06 5 26881369 26881369 G A CDH9 Missense_Mutation p.S749L 0.59 deleterious(0.01) possibly_damaging(0.504) TCGA-EE-A2GJ-06 5 31299719 31299719 C T CDH6 Silent p.N264N 0.51 TCGA-EE-A2GJ-06 5 32010454 32010454 C T PDZD2 Missense_Mutation p.L425F 0.31 tolerated(0.63) probably_damaging(0.935) TCGA-EE-A2GJ-06 5 35793314 35793314 G A SPEF2 Silent p.R1536R 0.27 TCGA-EE-A2GJ-06 5 38427288 38427288 C T EGFLAM Missense_Mutation p.S663F 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 5 39202935 39202935 C T FYB Missense_Mutation p.G53E 0.56 tolerated(0.21) benign(0.129) TCGA-EE-A2GJ-06 5 41004579 41004579 G A MROH2B Missense_Mutation p.H1355Y 0.23 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A2GJ-06 5 42801131 42801131 C T SEPP1 Silent p.K279K 0.35 TCGA-EE-A2GJ-06 5 52379186 52379186 C T ITGA2 Missense_Mutation p.S1054F 0.27 deleterious(0.01) possibly_damaging(0.452) TCGA-EE-A2GJ-06 5 55528733 55528733 C T ANKRD55 Missense_Mutation p.R3K 0.08 deleterious_low_confidence(0.03) benign(0.001) TCGA-EE-A2GJ-06 5 63871725 63871725 C T RGS7BP Nonsense_Mutation p.R153* 0.65 TCGA-EE-A2GJ-06 5 76129575 76129575 G A F2RL1 Silent p.R381R 0.43 TCGA-EE-A2GJ-06 5 77805875 77805875 C T LHFPL2 Silent p.P54P 0.33 TCGA-EE-A2GJ-06 5 78338173 78338173 G A DMGDH Missense_Mutation p.P376S 0.47 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GJ-06 5 79372803 79372803 C T THBS4 Missense_Mutation p.P673L 0.39 tolerated(0.21) probably_damaging(0.998) TCGA-EE-A2GJ-06 5 80550260 80550260 G A CKMT2 Missense_Mutation p.G133S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 5 89989777 89989777 G A GPR98 Missense_Mutation p.E2402K 0.65 possibly_damaging(0.636) TCGA-EE-A2GJ-06 5 916028 916028 G A TRIP13 Silent p.E381E 0.61 TCGA-EE-A2GJ-06 5 92923686 92923686 G A NR2F1 Missense_Mutation p.G176E 0.61 deleterious(0.05) benign(0.356) TCGA-EE-A2GJ-06 5 92929449 92929449 C T NR2F1 Silent p.V391V 0.58 TCGA-EE-A2GJ-06 5 92929450 92929450 C T NR2F1 Missense_Mutation p.R392C 0.58 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 6 105577305 105577305 G A BVES Silent p.F100F 0.38 TCGA-EE-A2GJ-06 6 10875048 10875048 G A GCM2 Missense_Mutation p.S234F 0.42 deleterious(0.01) possibly_damaging(0.629) TCGA-EE-A2GJ-06 6 112537645 112537645 G A LAMA4 Missense_Mutation p.T74I 0.24 deleterious(0.05) benign(0.1) TCGA-EE-A2GJ-06 6 116441754 116441754 G A COL10A1 Missense_Mutation p.P509S 0.30 tolerated(0.05) unknown(0) TCGA-EE-A2GJ-06 6 117116940 117116940 C T GPRC6A Missense_Mutation p.R536K 0.31 tolerated(0.63) benign(0.004) TCGA-EE-A2GJ-06 6 117150141 117150141 C T GPRC6A Silent p.V12V 0.23 TCGA-EE-A2GJ-06 6 117632270 117632270 G A ROS1 Missense_Mutation p.P2049L 0.30 deleterious(0.01) benign(0.14) TCGA-EE-A2GJ-06 6 117678977 117678977 G A ROS1 Missense_Mutation p.P1282S 0.35 deleterious(0.04) possibly_damaging(0.53) TCGA-EE-A2GJ-06 6 117853555 117853555 G A DCBLD1 Missense_Mutation p.D240N 0.39 tolerated(0.4) benign(0.024) TCGA-EE-A2GJ-06 6 119510860 119510860 G A MAN1A1 Silent p.A505A 0.34 TCGA-EE-A2GJ-06 6 12121520 12121520 G T HIVEP1 Nonsense_Mutation p.E498* 0.39 TCGA-EE-A2GJ-06 6 12121894 12121894 C T HIVEP1 Silent p.S622S 0.36 TCGA-EE-A2GJ-06 6 121412005 121412005 G A TBC1D32 Silent p.F1216F 0.27 TCGA-EE-A2GJ-06 6 123376999 123376999 C T CLVS2 Missense_Mutation p.P242S 0.27 tolerated(0.07) possibly_damaging(0.526) TCGA-EE-A2GJ-06 6 126080793 126080793 C T HEY2 Missense_Mutation p.P287S 0.29 tolerated(0.24) possibly_damaging(0.87) TCGA-EE-A2GJ-06 6 128151021 128151021 C T THEMIS Silent p.R103R 0.29 TCGA-EE-A2GJ-06 6 129674493 129674493 G A LAMA2 Missense_Mutation p.E1570K 0.42 tolerated(0.29) benign(0.008) TCGA-EE-A2GJ-06 6 131225613 131225613 A T EPB41L2 Missense_Mutation p.D307E 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GJ-06 6 132029937 132029937 C T CTAGE9 Missense_Mutation p.D741N 0.35 tolerated(0.07) benign(0.162) TCGA-EE-A2GJ-06 6 132031781 132031781 C T CTAGE9 Missense_Mutation p.R126Q 0.27 tolerated(1) benign(0.002) TCGA-EE-A2GJ-06 6 132873887 132873887 G A TAAR8 Missense_Mutation p.G19E 0.22 tolerated(0.06) benign(0.053) TCGA-EE-A2GJ-06 6 132910798 132910798 C T TAAR5 Missense_Mutation p.E10K 0.26 tolerated(0.12) benign(0.002) TCGA-EE-A2GJ-06 6 132939139 132939139 G A TAAR2 Missense_Mutation p.S69F 0.34 deleterious(0.01) benign(0.076) TCGA-EE-A2GJ-06 6 133802735 133802735 G A EYA4 Missense_Mutation p.E369K 0.37 deleterious(0) benign(0.252) TCGA-EE-A2GJ-06 6 135521527 135521527 C T MYB Missense_Mutation p.P642S 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A2GJ-06 6 136590624 136590624 C T BCLAF1 Missense_Mutation p.E724K 0.07 tolerated(0.09) possibly_damaging(0.486) TCGA-EE-A2GJ-06 6 152456295 152456295 G A SYNE1 Missense_Mutation p.P8578S 0.46 probably_damaging(0.997) TCGA-EE-A2GJ-06 6 152639236 152639236 G A SYNE1 Missense_Mutation p.R5518W 0.32 possibly_damaging(0.708) TCGA-EE-A2GJ-06 6 152712529 152712529 C T SYNE1 Silent p.L2629L 0.40 TCGA-EE-A2GJ-06 6 152784511 152784511 C T SYNE1 Missense_Mutation p.E692K 0.19 benign(0.192) TCGA-EE-A2GJ-06 6 15533578 15533578 G A DTNBP1 Missense_Mutation p.T187I 0.21 deleterious(0.02) possibly_damaging(0.827) TCGA-EE-A2GJ-06 6 155450986 155450986 C T TIAM2 Missense_Mutation p.P210L 0.19 tolerated_low_confidence(0.31) benign(0.002) TCGA-EE-A2GJ-06 6 158509751 158509751 C G SYNJ2 Missense_Mutation p.Q1135E 0.35 deleterious_low_confidence(0.03) benign(0.194) TCGA-EE-A2GJ-06 6 159670212 159670212 T C FNDC1 Missense_Mutation p.V1611A 0.32 deleterious(0.04) possibly_damaging(0.766) TCGA-EE-A2GJ-06 6 160494795 160494795 T G IGF2R Missense_Mutation p.C1652G 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GJ-06 6 160638496 160638496 G A SLC22A2 Nonsense_Mutation p.Q546* 0.21 TCGA-EE-A2GJ-06 6 161137681 161137681 C T PLG Missense_Mutation p.P225S 0.34 deleterious(0.02) possibly_damaging(0.453) TCGA-EE-A2GJ-06 6 161162340 161162340 C T PLG Intron 0.35 TCGA-EE-A2GJ-06 6 163987773 163987773 C T QKI Nonsense_Mutation p.R319* 0.23 TCGA-EE-A2GJ-06 6 167571071 167571071 G A GPR31 Silent p.G83G 0.38 TCGA-EE-A2GJ-06 6 167571113 167571113 G A GPR31 Silent p.F69F 0.27 TCGA-EE-A2GJ-06 6 17292497 17292497 T C RBM24 3'UTR 0.23 TCGA-EE-A2GJ-06 6 17837293 17837293 G A KIF13A Missense_Mutation p.S324F 0.58 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2GJ-06 6 18264787 18264787 G A DEK 5'UTR 0.09 TCGA-EE-A2GJ-06 6 24551732 24551732 C T KIAA0319 Silent p.R990R 0.28 TCGA-EE-A2GJ-06 6 24554805 24554805 C T KIAA0319 Missense_Mutation p.G971E 0.22 deleterious(0.03) benign(0.08) TCGA-EE-A2GJ-06 6 24581172 24581172 T G KIAA0319 Missense_Mutation p.N421H 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 6 25450225 25450225 T G LRRC16A Splice_Site p.X157_splice 0.08 TCGA-EE-A2GJ-06 6 25819819 25819819 A G SLC17A1 Missense_Mutation p.V150A 0.26 tolerated(0.27) benign(0.046) TCGA-EE-A2GJ-06 6 26413967 26413967 C T BTN3A1 3'UTR 0.22 TCGA-EE-A2GJ-06 6 26509046 26509046 C T BTN1A1 Missense_Mutation p.L409F 0.15 tolerated(0.33) possibly_damaging(0.78) TCGA-EE-A2GJ-06 6 26638664 26638664 C T ZNF322 Missense_Mutation p.G40S 0.16 deleterious(0.01) benign(0.014) TCGA-EE-A2GJ-06 6 27419353 27419353 C T ZNF184 Missense_Mutation p.R662Q 0.18 tolerated(0.09) benign(0.027) TCGA-EE-A2GJ-06 6 2770558 2770558 A G WRNIP1 Missense_Mutation p.T407A 0.37 tolerated(0.56) benign(0.004) TCGA-EE-A2GJ-06 6 27879209 27879209 C T OR2B2 Missense_Mutation p.V297I 0.13 deleterious(0.03) benign(0.125) TCGA-EE-A2GJ-06 6 28473543 28473543 G A GPX6 Silent p.F132F 0.16 TCGA-EE-A2GJ-06 6 28473551 28473551 G A GPX6 Missense_Mutation p.P130S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 6 28542663 28542663 C T SCAND3 Missense_Mutation p.E607K 0.32 deleterious_low_confidence(0.05) benign(0.025) TCGA-EE-A2GJ-06 6 28963462 28963462 C T ZNF311 Silent p.R439R 0.28 TCGA-EE-A2GJ-06 6 28971847 28971847 G A ZNF311 5'UTR 0.32 TCGA-EE-A2GJ-06 6 28971848 28971848 G A ZNF311 5'UTR 0.29 TCGA-EE-A2GJ-06 6 29054298 29054298 G A OR2B3 Missense_Mutation p.S243F 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 6 29079884 29079884 G A OR2J3 Missense_Mutation p.D73N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 6 29080253 29080253 C T OR2J3 Missense_Mutation p.H196Y 0.23 tolerated(0.21) possibly_damaging(0.602) TCGA-EE-A2GJ-06 6 29141408 29141408 G A OR2J2 5'UTR 0.23 TCGA-EE-A2GJ-06 6 29342328 29342328 A C OR12D3 Missense_Mutation p.V246G 0.22 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GJ-06 6 29625047 29625047 C T MOG Missense_Mutation p.L21F 0.41 tolerated(0.76) unknown(0) TCGA-EE-A2GJ-06 6 31654868 31654868 G A ABHD16A 3'UTR 0.18 TCGA-EE-A2GJ-06 6 31678155 31678155 G A LY6G6F Missense_Mutation p.E277K 0.25 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-EE-A2GJ-06 6 31741213 31741213 C T VWA7 Silent p.G241G 0.26 TCGA-EE-A2GJ-06 6 31779702 31779702 G A HSPA1L Silent p.T16T 0.19 TCGA-EE-A2GJ-06 6 31855988 31855988 A T EHMT2 Silent p.S525S 0.19 TCGA-EE-A2GJ-06 6 32046847 32046847 C T RNA5SP206 5'Flank 0.18 TCGA-EE-A2GJ-06 6 32632738 32632738 G A HLA-DQB1 Silent p.F72F 0.37 TCGA-EE-A2GJ-06 6 33283465 33283465 G C ZBTB22 Missense_Mutation p.S410C 0.24 deleterious(0.03) benign(0.338) TCGA-EE-A2GJ-06 6 33383373 33383373 C T PHF1 Silent p.P447P 0.25 TCGA-EE-A2GJ-06 6 33410236 33410236 C T SYNGAP1 Silent p.I767I 0.26 TCGA-EE-A2GJ-06 6 35911619 35911619 C T SLC26A8 3'UTR 0.34 TCGA-EE-A2GJ-06 6 35928780 35928780 G A SLC26A8 Missense_Mutation p.R520C 0.29 deleterious(0) probably_damaging(0.953) TCGA-EE-A2GJ-06 6 36270181 36270181 G A PNPLA1 Missense_Mutation p.R440Q 0.27 tolerated_low_confidence(0.55) benign(0) TCGA-EE-A2GJ-06 6 38793989 38793989 G A DNAH8 Missense_Mutation p.R1085Q 0.38 benign(0.017) TCGA-EE-A2GJ-06 6 38891881 38891881 G A DNAH8 Silent p.R3418R 0.32 TCGA-EE-A2GJ-06 6 38919147 38919147 C T DNAH8 Missense_Mutation p.S3884F 0.45 probably_damaging(0.983) TCGA-EE-A2GJ-06 6 38919199 38919199 G A DNAH8 Nonsense_Mutation p.W3901* 0.44 TCGA-EE-A2GJ-06 6 38919200 38919200 G A DNAH8 Missense_Mutation p.E3902K 0.44 benign(0.081) TCGA-EE-A2GJ-06 6 39832259 39832259 C T DAAM2 Silent p.I103I 0.22 TCGA-EE-A2GJ-06 6 40400562 40400562 C T LRFN2 Silent p.L97L 0.30 TCGA-EE-A2GJ-06 6 41126415 41126415 G A TREM2 3'UTR 0.26 TCGA-EE-A2GJ-06 6 41196694 41196694 T G TREML4 Missense_Mutation p.N102K 0.30 tolerated(0.43) benign(0.055) TCGA-EE-A2GJ-06 6 41744686 41744686 G A FRS3 Missense_Mutation p.P14S 0.24 deleterious(0.01) benign(0.001) TCGA-EE-A2GJ-06 6 41774178 41774178 T C USP49 Missense_Mutation p.K182E 0.45 tolerated(0.21) benign(0.392) TCGA-EE-A2GJ-06 6 41889369 41889369 C T BYSL Silent p.I23I 0.58 TCGA-EE-A2GJ-06 6 42224802 42224802 G A TRERF1 Missense_Mutation p.P792L 0.49 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2GJ-06 6 42833145 42833145 C T GLTSCR1L Silent p.S1067S 0.22 TCGA-EE-A2GJ-06 6 42942632 42942632 G C PEX6 Missense_Mutation p.R343G 0.24 deleterious(0.05) benign(0.043) TCGA-EE-A2GJ-06 6 43589866 43589866 G A GTPBP2 Silent p.I502I 0.23 TCGA-EE-A2GJ-06 6 44255358 44255358 G A TCTE1 Missense_Mutation p.P69S 0.19 tolerated(0.07) benign(0.062) TCGA-EE-A2GJ-06 6 46107699 46107699 G A ENPP4 Missense_Mutation p.E127K 0.33 tolerated(0.31) benign(0.005) TCGA-EE-A2GJ-06 6 46657732 46657732 A T TDRD6 Missense_Mutation p.T623S 0.39 tolerated(0.12) possibly_damaging(0.717) TCGA-EE-A2GJ-06 6 46803191 46803191 C T MEP1A Silent p.D663D 0.28 TCGA-EE-A2GJ-06 6 47202494 47202494 G A TNFRSF21 Silent p.F550F 0.20 TCGA-EE-A2GJ-06 6 47976420 47976420 G A PTCHD4 Missense_Mutation p.T286I 0.41 tolerated(0.1) probably_damaging(0.971) TCGA-EE-A2GJ-06 6 49753680 49753680 G A PGK2 Silent p.I407I 0.34 TCGA-EE-A2GJ-06 6 49754498 49754498 G A PGK2 Missense_Mutation p.P135S 0.33 tolerated(0.27) benign(0.004) TCGA-EE-A2GJ-06 6 50805686 50805686 A C TFAP2B Splice_Site p.X274_splice 0.37 TCGA-EE-A2GJ-06 6 51890878 51890878 C T PKHD1 Missense_Mutation p.E1244K 0.32 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GJ-06 6 51918899 51918899 C T PKHD1 Missense_Mutation p.G634D 0.38 tolerated(0.89) benign(0.002) TCGA-EE-A2GJ-06 6 54095605 54095605 C T MLIP Missense_Mutation p.L403F 0.34 tolerated(0.2) probably_damaging(0.988) TCGA-EE-A2GJ-06 6 54805432 54805432 G A FAM83B Missense_Mutation p.E555K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.35 deleterious(0) probably_damaging(0.934) TCGA-EE-A2GJ-06 6 55922538 55922538 C T COL21A1 Missense_Mutation p.G931S 0.42 deleterious(0) unknown(0) TCGA-EE-A2GJ-06 6 56482831 56482831 C T DST Intron 0.35 TCGA-EE-A2GJ-06 6 63990434 63990434 C T LGSN Missense_Mutation p.G341E 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 6 70778345 70778345 C T COL19A1 Missense_Mutation p.P401S 0.32 tolerated(0.11) unknown(0) TCGA-EE-A2GJ-06 6 70916851 70916851 C T COL19A1 Missense_Mutation p.A1101V 0.27 tolerated(0.08) benign(0.177) TCGA-EE-A2GJ-06 6 72003052 72003052 G A OGFRL1 Silent p.R97R 0.28 TCGA-EE-A2GJ-06 6 7403060 7403060 G A RIOK1 Missense_Mutation p.G233S 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2GJ-06 6 7583627 7583627 C T DSP Silent p.S2044S 0.15 TCGA-EE-A2GJ-06 6 76657158 76657158 C T IMPG1 Missense_Mutation p.M639I 0.26 tolerated(0.2) benign(0.038) TCGA-EE-A2GJ-06 6 8064587 8064587 G C BLOC1S5 Missense_Mutation p.T8S 0.11 tolerated(0.55) benign(0.017) TCGA-EE-A2GJ-06 6 84371317 84371324 TCATAACC - SNAP91 Splice_Site p.X117_splice 0.20 TCGA-EE-A2GJ-06 6 86181160 86181160 G A NT5E Intron 0.34 TCGA-EE-A2GJ-06 6 87970318 87970318 G T ZNF292 Missense_Mutation p.G2324V 0.33 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A2GJ-06 6 90468564 90468564 G A MDN1 Missense_Mutation p.S859F 0.37 probably_damaging(1) TCGA-EE-A2GJ-06 6 93956522 93956522 C T EPHA7 Missense_Mutation p.G905E 0.27 tolerated(0.53) benign(0.326) TCGA-EE-A2GJ-06 6 93965744 93965744 C T EPHA7 Silent p.G728G 0.18 TCGA-EE-A2GJ-06 6 94124437 94124437 G A EPHA7 Missense_Mutation p.S49F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 7 100084786 100084787 - C NYAP1 Frame_Shift_Ins p.S140Qfs*30 0.32 TCGA-EE-A2GJ-06 7 100275174 100275174 C T GNB2 Silent p.P107P 0.38 TCGA-EE-A2GJ-06 7 100678548 100678548 C T MUC17 Missense_Mutation p.P1284L 0.29 unknown(0) TCGA-EE-A2GJ-06 7 100679927 100679927 C T MUC17 Missense_Mutation p.P1744S 0.29 possibly_damaging(0.884) TCGA-EE-A2GJ-06 7 103205751 103205751 G A RELN Silent p.I1728I 0.33 TCGA-EE-A2GJ-06 7 108143074 108143074 G A PNPLA8 Missense_Mutation p.P407S 0.27 tolerated(0.06) benign(0.253) TCGA-EE-A2GJ-06 7 115581000 115581000 G A TFEC Intron 0.38 TCGA-EE-A2GJ-06 7 116918149 116918149 T C WNT2 3'UTR 0.20 TCGA-EE-A2GJ-06 7 116937682 116937682 G A WNT2 Silent p.I279I 0.33 TCGA-EE-A2GJ-06 7 121698913 121698913 C T PTPRZ1 Silent p.S2196S 0.21 TCGA-EE-A2GJ-06 7 123509239 123509239 A G HYAL4 Silent p.T304T 0.24 TCGA-EE-A2GJ-06 7 133812131 133812131 C T LRGUK Missense_Mutation p.S4F 0.25 tolerated_low_confidence(0.64) unknown(0) TCGA-EE-A2GJ-06 7 133812132 133812132 C T LRGUK Silent p.S4S 0.24 TCGA-EE-A2GJ-06 7 137590526 137590526 A T CREB3L2 Nonsense_Mutation p.Y279* 0.29 TCGA-EE-A2GJ-06 7 137801515 137801515 G A AKR1D1 3'UTR 0.31 TCGA-EE-A2GJ-06 7 138596019 138596019 G A KIAA1549 Silent p.F1006F 0.41 TCGA-EE-A2GJ-06 7 140481411 140481411 C T BRAF Missense_Mutation p.G466E 0.30 deleterious(0) probably_damaging(0.911) TCGA-EE-A2GJ-06 7 141490332 141490332 C T TAS2R5 Silent p.L57L 0.34 TCGA-EE-A2GJ-06 7 141752115 141752115 G A MGAM Missense_Mutation p.D943N 0.24 tolerated(0.91) benign(0) TCGA-EE-A2GJ-06 7 141765190 141765190 C T MGAM Missense_Mutation p.P1514S 0.47 deleterious(0.01) possibly_damaging(0.732) TCGA-EE-A2GJ-06 7 141951970 141951970 T G PRSS58 3'UTR 0.33 TCGA-EE-A2GJ-06 7 142032003 142032003 G A TRBV7-1 5'Flank 0.18 TCGA-EE-A2GJ-06 7 142143858 142143858 C T TRBV6-7 Missense_Mutation p.M46I 0.27 tolerated(0.06) possibly_damaging(0.486) TCGA-EE-A2GJ-06 7 142459673 142459673 G A PRSS1 Silent p.G83G 0.30 TCGA-EE-A2GJ-06 7 142625961 142625961 C T TRPV5 Missense_Mutation p.G196E 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GJ-06 7 142919714 142919714 G A TAS2R40 Silent p.T181T 0.36 TCGA-EE-A2GJ-06 7 143049035 143049035 G A CLCN1 Missense_Mutation p.D982N 0.43 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2GJ-06 7 143140671 143140671 G A TAS2R60 Silent p.L42L 0.27 TCGA-EE-A2GJ-06 7 143141013 143141013 C T TAS2R60 Silent p.T156T 0.40 TCGA-EE-A2GJ-06 7 143657714 143657714 C T OR2F1 Silent p.S217S 0.36 TCGA-EE-A2GJ-06 7 143747612 143747612 G A OR2A5 Missense_Mutation p.G40R 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2GJ-06 7 143747613 143747613 G A OR2A5 Missense_Mutation p.G40E 0.32 deleterious(0.02) possibly_damaging(0.634) TCGA-EE-A2GJ-06 7 143747845 143747845 G A OR2A5 Missense_Mutation p.M117I 0.27 deleterious(0.01) benign(0.001) TCGA-EE-A2GJ-06 7 143793082 143793082 A C OR2A12 Silent p.A294A 0.34 TCGA-EE-A2GJ-06 7 144061193 144061193 G A ARHGEF5 Silent p.K477K 0.17 TCGA-EE-A2GJ-06 7 144320338 144320338 G A TPK1 Missense_Mutation p.S92L 0.30 tolerated(0.17) benign(0.003) TCGA-EE-A2GJ-06 7 146825806 146825806 T A CNTNAP2 Missense_Mutation p.F321I 0.28 tolerated(0.31) benign(0.002) TCGA-EE-A2GJ-06 7 147092819 147092819 G A CNTNAP2 Silent p.R539R 0.31 TCGA-EE-A2GJ-06 7 14880876 14880876 C T DGKB Missense_Mutation p.E5K 0.52 tolerated(0.58) benign(0.15) TCGA-EE-A2GJ-06 7 150028134 150028134 C T ZBED6CL Missense_Mutation p.A214V 0.15 tolerated(0.51) benign(0.011) TCGA-EE-A2GJ-06 7 150036168 150036168 C T RARRES2 Silent p.R94R 0.38 TCGA-EE-A2GJ-06 7 150174737 150174737 G A GIMAP8 Missense_Mutation p.D623N 0.35 tolerated(0.3) benign(0.007) TCGA-EE-A2GJ-06 7 150217095 150217095 C T GIMAP7 Silent p.I11I 0.32 TCGA-EE-A2GJ-06 7 150217918 150217918 G A GIMAP7 Missense_Mutation p.E286K 0.21 tolerated(1) benign(0) TCGA-EE-A2GJ-06 7 150325007 150325007 C T GIMAP6 Missense_Mutation p.E227K 0.25 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A2GJ-06 7 150327161 150327161 G A GIMAP6 Silent p.L24L 0.28 TCGA-EE-A2GJ-06 7 150390447 150390447 C T GIMAP2 3'UTR 0.39 TCGA-EE-A2GJ-06 7 150499311 150499311 G A TMEM176A Silent p.Q61Q 0.23 TCGA-EE-A2GJ-06 7 150553894 150553894 C T AOC1 Silent p.T112T 0.22 TCGA-EE-A2GJ-06 7 150556102 150556102 G A AOC1 Missense_Mutation p.G608S 0.28 tolerated(0.11) benign(0.33) TCGA-EE-A2GJ-06 7 150556103 150556103 G A AOC1 Missense_Mutation p.G608D 0.28 tolerated(0.12) benign(0.017) TCGA-EE-A2GJ-06 7 150696302 150696302 C T NOS3 Silent p.G327G 0.35 TCGA-EE-A2GJ-06 7 150864110 150864110 G A GBX1 Missense_Mutation p.P176S 0.27 tolerated(0.11) benign(0.002) TCGA-EE-A2GJ-06 7 151878118 151878118 G A KMT2C Missense_Mutation p.P2276L 0.34 possibly_damaging(0.792) TCGA-EE-A2GJ-06 7 19765245 19765245 G A TMEM196 Silent p.G117G 0.18 TCGA-EE-A2GJ-06 7 20197851 20197851 C T MACC1 Silent p.R711R 0.54 TCGA-EE-A2GJ-06 7 20795330 20795330 T G ABCB5 3'UTR 0.25 TCGA-EE-A2GJ-06 7 21946201 21946201 G A CDCA7L Silent p.T246T 0.18 TCGA-EE-A2GJ-06 7 23240047 23240047 C G NUPL2 Missense_Mutation p.L319V 0.24 deleterious(0.04) benign(0.054) TCGA-EE-A2GJ-06 7 23401326 23401326 A C IGF2BP3 Missense_Mutation p.V107G 0.51 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GJ-06 7 2771243 2771243 G A GNA12 Nonsense_Mutation p.Q240* 0.55 TCGA-EE-A2GJ-06 7 2946451 2946451 C T CARD11 Missense_Mutation p.E1096K 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GJ-06 7 2963920 2963920 A C CARD11 Missense_Mutation p.D629E 0.16 tolerated(0.18) benign(0.033) TCGA-EE-A2GJ-06 7 31125012 31125012 G A ADCYAP1R1 Nonsense_Mutation p.W208* 0.54 TCGA-EE-A2GJ-06 7 34192895 34192895 C T BMPER 3'UTR 0.66 TCGA-EE-A2GJ-06 7 35242171 35242171 G A TBX20 Silent p.S405S 0.18 TCGA-EE-A2GJ-06 7 35244178 35244178 G A TBX20 Silent p.L303L 0.21 TCGA-EE-A2GJ-06 7 38433605 38433605 C T AMPH Silent p.Q536Q 0.12 TCGA-EE-A2GJ-06 7 38783140 38783140 G A VPS41 Nonsense_Mutation p.R662* 0.66 TCGA-EE-A2GJ-06 7 38783141 38783141 G A VPS41 Silent p.S661S 0.66 TCGA-EE-A2GJ-06 7 39246994 39246994 C T POU6F2 Missense_Mutation p.L96F 0.12 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-EE-A2GJ-06 7 39379268 39379268 A C POU6F2 Missense_Mutation p.Q180P 0.21 tolerated_low_confidence(0.28) unknown(0) TCGA-EE-A2GJ-06 7 39379586 39379586 C T POU6F2 Missense_Mutation p.S286L 0.57 deleterious_low_confidence(0.05) unknown(0) TCGA-EE-A2GJ-06 7 40041576 40041576 A T CDK13 Missense_Mutation p.M767L 0.16 tolerated(0.43) possibly_damaging(0.881) TCGA-EE-A2GJ-06 7 4014040 4014040 G A SDK1 Silent p.S619S 0.61 TCGA-EE-A2GJ-06 7 47835655 47835655 C T PKD1L1 Missense_Mutation p.E2763K 0.20 tolerated(1) benign(0.008) TCGA-EE-A2GJ-06 7 48349586 48349586 G A ABCA13 Missense_Mutation p.D3122N 0.14 benign(0.172) TCGA-EE-A2GJ-06 7 48559685 48559685 C T ABCA13 Missense_Mutation p.P4616S 0.64 probably_damaging(1) TCGA-EE-A2GJ-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.51 TCGA-EE-A2GJ-06 7 62758725 62758725 C T ZNF733P RNA 0.12 TCGA-EE-A2GJ-06 7 64453074 64453074 G A ERV3-1 Missense_Mutation p.P111S 0.41 tolerated(0.94) benign(0.061) TCGA-EE-A2GJ-06 7 70886084 70886084 C T WBSCR17 Missense_Mutation p.P319S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GJ-06 7 71177138 71177138 G A WBSCR17 3'UTR 0.38 TCGA-EE-A2GJ-06 7 71252703 71252703 C T CALN1 3'UTR 0.29 TCGA-EE-A2GJ-06 7 72657540 72657540 C T GTF2IRD2P1 RNA 0.31 TCGA-EE-A2GJ-06 7 76826196 76826196 A C FGL2 Silent p.V240V 0.36 TCGA-EE-A2GJ-06 7 83021940 83021940 C T SEMA3E Missense_Mutation p.R533Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GJ-06 7 87214866 87214866 C T ABCB1 Missense_Mutation p.G83E 0.42 tolerated(0.1) benign(0.041) TCGA-EE-A2GJ-06 7 87476314 87476314 G A SLC25A40 Missense_Mutation p.S194F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 7 87476316 87476316 A T SLC25A40 Silent p.I193I 0.28 TCGA-EE-A2GJ-06 7 89854374 89854374 G C STEAP2 5'UTR 0.26 TCGA-EE-A2GJ-06 7 91936786 91936786 C T ANKIB1 Missense_Mutation p.P101L 0.28 deleterious(0.02) possibly_damaging(0.756) TCGA-EE-A2GJ-06 7 92734479 92734479 G A SAMD9 Missense_Mutation p.P311L 0.41 deleterious(0) possibly_damaging(0.747) TCGA-EE-A2GJ-06 7 92763932 92763932 C T SAMD9L Missense_Mutation p.M451I 0.25 tolerated(0.15) benign(0) TCGA-EE-A2GJ-06 7 92932784 92932784 T A CCDC132 Missense_Mutation p.D458E 0.32 tolerated(0.71) benign(0.001) TCGA-EE-A2GJ-06 7 93098045 93098045 C T CALCR Missense_Mutation p.G186E 0.43 deleterious(0.05) possibly_damaging(0.809) TCGA-EE-A2GJ-06 7 95813734 95813734 A C SLC25A13 Silent p.T345T 0.19 TCGA-EE-A2GJ-06 7 99786472 99786472 C T STAG3 Missense_Mutation p.S183F 0.33 tolerated(0.57) benign(0.016) TCGA-EE-A2GJ-06 8 101016247 101016247 G A RGS22 Missense_Mutation p.P845L 0.39 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GJ-06 8 103340049 103340049 G A UBR5 Missense_Mutation p.L468F 0.35 tolerated(1) probably_damaging(0.942) TCGA-EE-A2GJ-06 8 10464745 10464745 G A RP1L1 Missense_Mutation p.P2288L 0.26 unknown(0) TCGA-EE-A2GJ-06 8 10468037 10468037 C T RP1L1 Missense_Mutation p.E1191K 0.36 possibly_damaging(0.811) TCGA-EE-A2GJ-06 8 10468038 10468038 C T RP1L1 Silent p.T1190T 0.34 TCGA-EE-A2GJ-06 8 105257282 105257282 G A RIMS2 Missense_Mutation p.G1158E 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GJ-06 8 105509875 105509875 G A LRP12 Missense_Mutation p.T302I 0.39 deleterious(0.04) possibly_damaging(0.755) TCGA-EE-A2GJ-06 8 106815501 106815501 C T ZFPM2 Missense_Mutation p.S1064F 0.23 tolerated(0.12) benign(0.429) TCGA-EE-A2GJ-06 8 106815664 106815664 G A ZFPM2 Silent p.G1118G 0.19 TCGA-EE-A2GJ-06 8 10756149 10756149 C T XKR6 Nonsense_Mutation p.W413* 0.34 TCGA-EE-A2GJ-06 8 10782166 10782166 C T XKR6 Silent p.K313K 0.34 TCGA-EE-A2GJ-06 8 108348391 108348391 G A ANGPT1 Missense_Mutation p.H188Y 0.26 deleterious(0.03) possibly_damaging(0.765) TCGA-EE-A2GJ-06 8 113662432 113662432 C T CSMD3 Missense_Mutation p.E1051K 0.23 deleterious(0.05) probably_damaging(0.942) TCGA-EE-A2GJ-06 8 114290842 114290842 C T CSMD3 Missense_Mutation p.G165R 0.29 deleterious(0) possibly_damaging(0.471) TCGA-EE-A2GJ-06 8 119592961 119592961 G A SAMD12 Missense_Mutation p.T62M 0.25 tolerated(0.14) benign(0.01) TCGA-EE-A2GJ-06 8 121259887 121259887 G A COL14A1 Missense_Mutation p.E839K 0.28 deleterious(0.01) benign(0.362) TCGA-EE-A2GJ-06 8 125074120 125074120 C T FER1L6 Missense_Mutation p.P1059S 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 8 133855107 133855107 G A PHF20L1 Missense_Mutation p.G912E 0.30 tolerated(0.19) benign(0.191) TCGA-EE-A2GJ-06 8 133882003 133882003 C T TG Missense_Mutation p.S69F 0.20 tolerated(0.1) benign(0.089) TCGA-EE-A2GJ-06 8 133941344 133941344 C G TG Missense_Mutation p.P1575A 0.41 deleterious(0.02) benign(0.091) TCGA-EE-A2GJ-06 8 139164922 139164922 C T FAM135B Missense_Mutation p.G599E 0.21 tolerated(0.45) benign(0.007) TCGA-EE-A2GJ-06 8 139164952 139164952 C T FAM135B Missense_Mutation p.R589K 0.21 tolerated(0.37) benign(0.003) TCGA-EE-A2GJ-06 8 13965682 13965682 G A SGCZ Nonsense_Mutation p.Q204* 0.36 TCGA-EE-A2GJ-06 8 13965683 13965683 G A SGCZ Silent p.S203S 0.36 TCGA-EE-A2GJ-06 8 141460942 141460942 A C TRAPPC9 Silent p.L275L 0.16 TCGA-EE-A2GJ-06 8 141900847 141900847 G C PTK2 5'UTR 0.38 TCGA-EE-A2GJ-06 8 142202548 142202548 G A DENND3 Silent p.E1086E 0.27 TCGA-EE-A2GJ-06 8 143922605 143922605 C T GML Missense_Mutation p.P49S 0.10 tolerated(0.2) possibly_damaging(0.865) TCGA-EE-A2GJ-06 8 145620346 145620346 G A CPSF1 Missense_Mutation p.S1080F 0.31 deleterious(0.01) possibly_damaging(0.867) TCGA-EE-A2GJ-06 8 145736175 145736175 A C MFSD3 Splice_Site p.X319_splice 0.42 TCGA-EE-A2GJ-06 8 146278518 146278518 C T C8orf33 Missense_Mutation p.P130L 0.24 deleterious(0) possibly_damaging(0.736) TCGA-EE-A2GJ-06 8 15601097 15601097 A G TUSC3 Missense_Mutation p.K305E 0.30 tolerated(0.17) benign(0.145) TCGA-EE-A2GJ-06 8 16012593 16012593 C T MSR1 Missense_Mutation p.R293Q 0.16 tolerated(0.56) benign(0.015) TCGA-EE-A2GJ-06 8 1616567 1616567 C T DLGAP2 Missense_Mutation p.S548L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 8 21842176 21842176 C T XPO7 Silent p.L433L 0.30 TCGA-EE-A2GJ-06 8 22140560 22140560 G A PIWIL2 Missense_Mutation p.G147R 0.21 deleterious(0.01) possibly_damaging(0.704) TCGA-EE-A2GJ-06 8 24255246 24255246 G A ADAMDEC1 Silent p.L226L 0.31 TCGA-EE-A2GJ-06 8 24256934 24256934 G A ADAMDEC1 Missense_Mutation p.G320R 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GJ-06 8 24346820 24346820 G A ADAM7 Missense_Mutation p.E414K 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 8 24775820 24775820 G A NEFM Missense_Mutation p.E818K 0.36 tolerated_low_confidence(0.27) possibly_damaging(0.787) TCGA-EE-A2GJ-06 8 27468013 27468013 C T CLU Missense_Mutation p.V26I 0.34 tolerated(0.53) benign(0.01) TCGA-EE-A2GJ-06 8 27925067 27925067 G A NUGGC Silent p.I225I 0.30 TCGA-EE-A2GJ-06 8 30699874 30699874 C T TEX15 Silent p.R2220R 0.25 TCGA-EE-A2GJ-06 8 3266994 3266994 G A CSMD1 Silent p.I565I 0.30 TCGA-EE-A2GJ-06 8 35647877 35647877 G A UNC5D Silent p.R886R 0.33 TCGA-EE-A2GJ-06 8 36641915 36641915 C T KCNU1 5'UTR 0.29 TCGA-EE-A2GJ-06 8 36768475 36768475 C T KCNU1 Missense_Mutation p.H787Y 0.27 deleterious(0.02) benign(0.014) TCGA-EE-A2GJ-06 8 3889592 3889592 C T CSMD1 Missense_Mutation p.G149R 0.21 probably_damaging(1) TCGA-EE-A2GJ-06 8 39872876 39872876 G A IDO2 Missense_Mutation p.D340N 0.27 tolerated(0.16) benign(0.038) TCGA-EE-A2GJ-06 8 52323826 52323826 C T PXDNL Silent p.V682V 0.33 TCGA-EE-A2GJ-06 8 52469449 52469449 G A PXDNL Missense_Mutation p.H111Y 0.23 deleterious(0.02) benign(0.288) TCGA-EE-A2GJ-06 8 55537472 55537472 G A RP1 Missense_Mutation p.E344K 0.40 tolerated(0.1) benign(0.181) TCGA-EE-A2GJ-06 8 55539350 55539350 G A RP1 Missense_Mutation p.E970K 0.30 tolerated(0.25) benign(0.025) TCGA-EE-A2GJ-06 8 55540288 55540288 T C RP1 Silent p.P1282P 0.28 TCGA-EE-A2GJ-06 8 57228813 57228813 G A SDR16C5 Missense_Mutation p.P32S 0.40 deleterious(0.04) benign(0.099) TCGA-EE-A2GJ-06 8 61121413 61121413 C T CA8 Silent p.G268G 0.29 TCGA-EE-A2GJ-06 8 66594616 66594616 C T MTFR1 Missense_Mutation p.S32L 0.26 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GJ-06 8 6873463 6873463 C T DEFA3 3'UTR 0.56 TCGA-EE-A2GJ-06 8 74209456 74209456 C T RDH10 Missense_Mutation p.P106L 0.51 deleterious_low_confidence(0.03) benign(0.009) TCGA-EE-A2GJ-06 8 76459858 76459858 G A HNF4G Silent p.R98R 0.27 TCGA-EE-A2GJ-06 8 76471192 76471192 A T HNF4G Missense_Mutation p.Q338L 0.27 tolerated(0.06) possibly_damaging(0.56) TCGA-EE-A2GJ-06 8 80992579 80992579 G A TPD52 Missense_Mutation p.P37L 0.50 deleterious(0.03) benign(0.242) TCGA-EE-A2GJ-06 8 86574497 86574497 G A REXO1L1P Silent p.S410S 0.25 TCGA-EE-A2GJ-06 8 8749330 8749330 G A MFHAS1 Silent p.L413L 0.34 TCGA-EE-A2GJ-06 8 87641194 87641194 C T CNGB3 Missense_Mutation p.R478Q 0.30 deleterious(0) probably_damaging(0.975) TCGA-EE-A2GJ-06 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.30 deleterious(0.03) possibly_damaging(0.564) TCGA-EE-A2GJ-06 8 90965699 90965699 G A NBN Missense_Mutation p.H540Y 0.29 tolerated(0.9) benign(0.005) TCGA-EE-A2GJ-06 8 94935031 94935031 C T PDP1 Silent p.S273S 0.28 TCGA-EE-A2GJ-06 8 97247859 97247859 C T UQCRB 5'Flank 0.27 TCGA-EE-A2GJ-06 9 101585540 101585540 G A GALNT12 Missense_Mutation p.C125Y 0.58 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2GJ-06 9 104125033 104125033 G A BAAT Missense_Mutation p.P312S 0.50 deleterious(0.02) possibly_damaging(0.901) TCGA-EE-A2GJ-06 9 104133228 104133228 G A BAAT Silent p.L153L 0.45 TCGA-EE-A2GJ-06 9 107298193 107298193 T A OR13C3 Missense_Mutation p.E301V 0.63 deleterious_low_confidence(0.02) benign(0.07) TCGA-EE-A2GJ-06 9 107379931 107379931 C T OR13C9 Missense_Mutation p.M185I 0.46 deleterious(0) benign(0.17) TCGA-EE-A2GJ-06 9 111812952 111812952 G A TMEM245 Silent p.I625I 0.42 TCGA-EE-A2GJ-06 9 113169251 113169251 C T SVEP1 Missense_Mutation p.G2877R 0.46 probably_damaging(0.994) TCGA-EE-A2GJ-06 9 113312281 113312281 C T SVEP1 Missense_Mutation p.R212Q 0.55 probably_damaging(0.999) TCGA-EE-A2GJ-06 9 113444971 113444971 C T MUSK Missense_Mutation p.P33S 0.42 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-EE-A2GJ-06 9 114886619 114886619 C T SUSD1 Silent p.E268E 0.56 TCGA-EE-A2GJ-06 9 115760332 115760332 C T ZNF883 RNA 0.52 TCGA-EE-A2GJ-06 9 117109058 117109058 G A AKNA Silent p.S1135S 0.58 TCGA-EE-A2GJ-06 9 119202920 119202920 G A ASTN2 Silent p.F1199F 0.38 TCGA-EE-A2GJ-06 9 119202937 119202937 C T ASTN2 Missense_Mutation p.E1194K 0.42 deleterious(0) unknown(0) TCGA-EE-A2GJ-06 9 123919771 123919771 C T CNTRL Silent p.F1463F 0.41 TCGA-EE-A2GJ-06 9 125273173 125273173 C T OR1J2 Silent p.F31F 0.55 TCGA-EE-A2GJ-06 9 125316096 125316096 C T OR1N2 Silent p.I216I 0.43 TCGA-EE-A2GJ-06 9 129453146 129453146 G A LMX1B Missense_Mutation p.E120K 0.40 tolerated(0.1) benign(0.075) TCGA-EE-A2GJ-06 9 131418973 131418973 G A WDR34 Silent p.S11S 0.67 TCGA-EE-A2GJ-06 9 135224736 135224736 G A SETX Missense_Mutation p.S27F 0.63 deleterious(0) possibly_damaging(0.519) TCGA-EE-A2GJ-06 9 136307760 136307760 C T ADAMTS13 Silent p.C710C 0.62 TCGA-EE-A2GJ-06 9 138651645 138651645 G A KCNT1 Nonsense_Mutation p.W325* 0.47 TCGA-EE-A2GJ-06 9 139925167 139925167 C T FUT7 Missense_Mutation p.A342T 0.47 tolerated(0.41) benign(0.025) TCGA-EE-A2GJ-06 9 140108686 140108686 C T NDOR1 Silent p.L181L 0.64 TCGA-EE-A2GJ-06 9 140809221 140809221 G A CACNA1B Missense_Mutation p.M246I 0.55 tolerated(0.17) benign(0.022) TCGA-EE-A2GJ-06 9 14819310 14819310 C T FREM1 Missense_Mutation p.G823E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 9 20990162 20990162 T C FOCAD Missense_Mutation p.V1682A 0.34 tolerated(0.1) possibly_damaging(0.456) TCGA-EE-A2GJ-06 9 21077397 21077397 C T IFNB1 Missense_Mutation p.E158K 0.32 tolerated(0.74) benign(0.014) TCGA-EE-A2GJ-06 9 2718438 2718438 C T KCNV2 Silent p.F233F 0.45 TCGA-EE-A2GJ-06 9 32500845 32500845 C T DDX58 Missense_Mutation p.E67K 0.41 tolerated(0.2) benign(0.434) TCGA-EE-A2GJ-06 9 32635109 32635109 G A TAF1L Missense_Mutation p.P157S 0.23 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2GJ-06 9 34616097 34616097 G A DCTN3 Silent p.I94I 0.28 TCGA-EE-A2GJ-06 9 34647892 34647892 C T GALT Silent p.I147I 0.30 TCGA-EE-A2GJ-06 9 37512445 37512445 C T FBXO10 3'UTR 0.44 TCGA-EE-A2GJ-06 9 446428 446428 G A DOCK8 Missense_Mutation p.R1880K 0.32 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2GJ-06 9 463581 463581 G A DOCK8 Missense_Mutation p.E2045K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 9 464360 464360 C T DOCK8 3'UTR 0.50 TCGA-EE-A2GJ-06 9 72758574 72758574 C T MAMDC2 Missense_Mutation p.H415Y 0.37 tolerated(1) benign(0.001) TCGA-EE-A2GJ-06 9 77365608 77365608 T G TRPM6 Silent p.R1677R 0.38 TCGA-EE-A2GJ-06 9 77397640 77397640 G A TRPM6 Missense_Mutation p.P1017S 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 9 80923395 80923395 C T PSAT1 Silent p.V212V 0.54 TCGA-EE-A2GJ-06 9 8504401 8504401 C T PTPRD Missense_Mutation p.R561Q 0.27 tolerated(0.37) possibly_damaging(0.512) TCGA-EE-A2GJ-06 9 8636727 8636727 C T PTPRD Missense_Mutation p.G61E 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GJ-06 9 87482207 87482207 T C NTRK2 Silent p.H498H 0.47 TCGA-EE-A2GJ-06 9 99798970 99798970 G A CTSV Silent p.F152F 0.32 TCGA-EE-A2GJ-06 X 102193023 102193023 C T RAB40AL Silent p.I259I 0.66 TCGA-EE-A2GJ-06 X 109694786 109694786 C T RGAG1 Missense_Mutation p.S314F 0.68 deleterious(0.01) benign(0.06) TCGA-EE-A2GJ-06 X 109764926 109764926 C T TDGF1P3 RNA 0.83 TCGA-EE-A2GJ-06 X 114141517 114141517 G A HTR2C Missense_Mutation p.E306K 0.54 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GJ-06 X 117053560 117053560 T C KLHL13 Missense_Mutation p.Q168R 0.74 tolerated(0.11) benign(0.202) TCGA-EE-A2GJ-06 X 118786936 118786936 G A SEPT6 Nonsense_Mutation p.R137* 0.67 TCGA-EE-A2GJ-06 X 123514521 123514521 C T TENM1 Silent p.K2688K 0.70 TCGA-EE-A2GJ-06 X 12939092 12939092 G A TLR8 Missense_Mutation p.D645N 0.61 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2GJ-06 X 135730413 135730413 C T CD40LG Silent p.I2I 0.67 TCGA-EE-A2GJ-06 X 1424365 1424365 C T CSF2RA Missense_Mutation p.P391L 0.38 deleterious(0) possibly_damaging(0.902) TCGA-EE-A2GJ-06 X 150349895 150349895 G A GPR50 Missense_Mutation p.E614K 0.76 tolerated_low_confidence(0.05) probably_damaging(0.956) TCGA-EE-A2GJ-06 X 151358362 151358362 G A GABRA3 Missense_Mutation p.S328F 0.66 deleterious(0) probably_damaging(1) TCGA-EE-A2GJ-06 X 151900428 151900428 G A MAGEA12 Nonsense_Mutation p.R125* 0.60 TCGA-EE-A2GJ-06 X 153555729 153555729 C T TKTL1 Intron 0.67 TCGA-EE-A2GJ-06 X 153695625 153695625 C T PLXNA3 Silent p.I1084I 0.68 TCGA-EE-A2GJ-06 X 154113632 154113632 A G H2AFB1 Missense_Mutation p.N103S 0.49 tolerated(0.18) benign(0) TCGA-EE-A2GJ-06 X 1585282 1585282 G A P2RY8 Missense_Mutation p.P57L 0.37 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GJ-06 X 2878427 2878427 G A ARSE Silent p.H5H 0.54 TCGA-EE-A2GJ-06 X 29973485 29973485 T C IL1RAPL1 Silent p.L547L 0.45 TCGA-EE-A2GJ-06 X 3028241 3028241 C T ARSF Silent p.F446F 0.62 TCGA-EE-A2GJ-06 X 3239636 3239636 C T MXRA5 Missense_Mutation p.E1364K 0.74 tolerated(0.34) benign(0.008) TCGA-EE-A2GJ-06 X 34148365 34148365 C T FAM47A Silent p.R677R 0.60 TCGA-EE-A2GJ-06 X 34961419 34961419 G A FAM47B Silent p.R157R 0.62 TCGA-EE-A2GJ-06 X 44703984 44703984 G A DUSP21 3'UTR 0.70 TCGA-EE-A2GJ-06 X 47836115 47836115 G A ZNF182 Silent p.P457P 0.68 TCGA-EE-A2GJ-06 X 50052110 50052110 C T CCNB3 Missense_Mutation p.S314F 0.65 deleterious(0) possibly_damaging(0.809) TCGA-EE-A2GJ-06 X 53616539 53616539 G A HUWE1 Missense_Mutation p.R1477C 0.59 probably_damaging(0.949) TCGA-EE-A2GJ-06 X 6069442 6069442 G A NLGN4X Silent p.N22N 0.45 TCGA-EE-A2GJ-06 X 70519966 70519966 G A NONO 3'UTR 0.59 TCGA-EE-A2GJ-06 X 73040479 73040479 C T TSIX RNA 0.78 TCGA-EE-A2GJ-06 X 75649204 75649204 C T MAGEE1 Missense_Mutation p.T294I 0.50 tolerated_low_confidence(0.26) benign(0.001) TCGA-EE-A2GJ-06 X 75649205 75649205 C G MAGEE1 Silent p.T294T 0.50 TCGA-EE-A2GJ-06 X 78217006 78217006 G A P2RY10 Missense_Mutation p.S330N 0.71 tolerated(0.11) possibly_damaging(0.783) TCGA-EE-A2GJ-06 X 84562249 84562249 C T POF1B Missense_Mutation p.D362N 0.58 deleterious(0.02) benign(0.057) TCGA-EE-A2GJ-06 X 91132994 91132994 G A PCDH11X Silent p.R585R 0.76 TCGA-EE-A2GJ-06 X 99657804 99657804 C A PCDH19 Missense_Mutation p.K778N 0.60 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2GK-06 15 77407514 77407514 C A PEAK1 Missense_Mutation p.D1409Y 0.13 deleterious(0) possibly_damaging(0.798) TCGA-EE-A2GK-06 17 6555544 6555546 CGC AGCG C17orf100 Frame_Shift_Ins p.P104Qfs*16 0.09 TCGA-EE-A2GK-06 17 75212465 75212465 A C SEC14L1 Intron 0.18 TCGA-EE-A2GK-06 19 5245959 5245959 G C PTPRS Silent p.P272P 0.09 TCGA-EE-A2GK-06 19 53138336 53138336 C A ZNF83 5'UTR 0.12 TCGA-EE-A2GL-06 10 101157268 101157268 G A GOT1 3'UTR 0.13 TCGA-EE-A2GL-06 10 106959778 106959778 C T SORCS3 Silent p.L677L 0.17 TCGA-EE-A2GL-06 10 123842181 123842181 G A TACC2 Missense_Mutation p.G56R 0.06 benign(0.183) TCGA-EE-A2GL-06 10 31799699 31799699 G C ZEB1 Missense_Mutation p.E195Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GL-06 10 46967552 46967552 T C SYT15 Silent p.Q175Q 0.06 TCGA-EE-A2GL-06 10 48388910 48388910 G A RBP3 Silent p.V656V 0.13 TCGA-EE-A2GL-06 10 48416570 48416570 C T GDF2 Missense_Mutation p.G42R 0.15 tolerated(0.06) benign(0.012) TCGA-EE-A2GL-06 10 50594617 50594617 G A DRGX Missense_Mutation p.P150S 0.36 tolerated(0.1) benign(0.012) TCGA-EE-A2GL-06 10 5435757 5435757 G A TUBAL3 Missense_Mutation p.P355L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GL-06 10 5435758 5435758 G A TUBAL3 Missense_Mutation p.P355S 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GL-06 10 5541065 5541065 G A CALML5 Missense_Mutation p.P113S 0.17 deleterious(0.03) benign(0.019) TCGA-EE-A2GL-06 10 60566913 60566913 T C BICC1 Missense_Mutation p.Y791H 0.12 tolerated(0.07) possibly_damaging(0.73) TCGA-EE-A2GL-06 10 75506612 75506612 C - SEC24C Frame_Shift_Del p.P8Hfs*219 0.16 TCGA-EE-A2GL-06 10 93805 93805 G A TUBB8 Missense_Mutation p.S176L 0.05 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A2GL-06 10 96541630 96541630 A G CYP2C19 Missense_Mutation p.K232R 0.20 tolerated(0.18) benign(0.013) TCGA-EE-A2GL-06 11 117869672 117869672 G A IL10RA Silent p.R351R 0.16 TCGA-EE-A2GL-06 11 121016712 121016712 C T TECTA Missense_Mutation p.S1331F 0.11 deleterious(0.04) possibly_damaging(0.447) TCGA-EE-A2GL-06 11 121058591 121058591 C T TECTA Missense_Mutation p.S2017F 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 11 123814138 123814138 C T OR6T1 Missense_Mutation p.M136I 0.18 deleterious(0.01) possibly_damaging(0.831) TCGA-EE-A2GL-06 11 124794781 124794781 G A HEPACAM Silent p.T90T 0.11 TCGA-EE-A2GL-06 11 125648695 125648695 C T PATE2 5'UTR 0.22 TCGA-EE-A2GL-06 11 133801388 133801388 G A IGSF9B Missense_Mutation p.A443V 0.10 tolerated(0.07) benign(0.067) TCGA-EE-A2GL-06 11 14992730 14992730 G A CALCA Silent p.F3F 0.10 TCGA-EE-A2GL-06 11 17542474 17542474 G A USH1C Missense_Mutation p.L385F 0.13 deleterious_low_confidence(0.02) benign(0.002) TCGA-EE-A2GL-06 11 2439807 2439807 C T TRPM5 Missense_Mutation p.E222K 0.12 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A2GL-06 11 36472831 36472831 C T PRR5L Missense_Mutation p.P220S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 11 3704526 3704527 - TGC NUP98 In_Frame_Ins p.A1607dup 0.14 TCGA-EE-A2GL-06 11 4112672 4112672 C T STIM1 Silent p.L568L 0.12 TCGA-EE-A2GL-06 11 4566953 4566953 C T OR52M1 Missense_Mutation p.S178F 0.15 deleterious(0.01) benign(0.121) TCGA-EE-A2GL-06 11 47360953 47360953 C T MYBPC3 Silent p.G690G 0.13 TCGA-EE-A2GL-06 11 5537722 5537722 G A UBQLNL 5'UTR 0.25 TCGA-EE-A2GL-06 11 55563508 55563508 G A OR5D14 Silent p.L159L 0.12 TCGA-EE-A2GL-06 11 55890093 55890093 C T OR8H3 Missense_Mutation p.T82I 0.11 deleterious(0.02) possibly_damaging(0.852) TCGA-EE-A2GL-06 11 55890553 55890553 G A OR8H3 Silent p.Q235Q 0.13 TCGA-EE-A2GL-06 11 5602787 5602787 C T OR52B6 Silent p.G227G 0.14 TCGA-EE-A2GL-06 11 58660159 58660159 G A GLYATL1P2 RNA 0.25 TCGA-EE-A2GL-06 11 58980257 58980257 C T MPEG1 Missense_Mutation p.E28K 0.15 tolerated(0.26) benign(0.001) TCGA-EE-A2GL-06 11 62384617 62384617 G A B3GAT3 Missense_Mutation p.H154Y 0.12 deleterious(0.01) benign(0) TCGA-EE-A2GL-06 11 62520117 62520117 C T ZBTB3 Silent p.Q390Q 0.10 TCGA-EE-A2GL-06 11 64888596 64888596 G A FAU Intron 0.17 TCGA-EE-A2GL-06 11 65793308 65793308 G A CATSPER1 Silent p.P181P 0.13 TCGA-EE-A2GL-06 11 66191061 66191061 G A NPAS4 Missense_Mutation p.G274E 0.10 tolerated(0.1) benign(0.169) TCGA-EE-A2GL-06 11 6623248 6623248 C A RRP8 Missense_Mutation p.Q99H 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.553) TCGA-EE-A2GL-06 11 71725701 71725701 C T NUMA1 Missense_Mutation p.E950K 0.13 benign(0.008) TCGA-EE-A2GL-06 11 72424253 72424253 G A ARAP1 Missense_Mutation p.P239S 0.07 tolerated(0.43) benign(0.316) TCGA-EE-A2GL-06 11 74911402 74911402 C T SLCO2B1 Missense_Mutation p.T578I 0.15 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GL-06 11 78369243 78369243 C T TENM4 Missense_Mutation p.E2724K 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 11 78369244 78369244 C T TENM4 Silent p.G2723G 0.12 TCGA-EE-A2GL-06 11 93170761 93170761 T A CCDC67 Missense_Mutation p.L564Q 0.16 tolerated(0.28) possibly_damaging(0.89) TCGA-EE-A2GL-06 12 10279998 10279998 T C CLEC7A Intron 0.17 TCGA-EE-A2GL-06 12 108147758 108147758 G A PRDM4 Silent p.L92L 0.11 TCGA-EE-A2GL-06 12 108147759 108147759 G A PRDM4 Silent p.T91T 0.13 TCGA-EE-A2GL-06 12 108618519 108618519 G A WSCD2 Missense_Mutation p.G229E 0.12 tolerated(0.2) probably_damaging(0.998) TCGA-EE-A2GL-06 12 113835157 113835157 G A SDS Silent p.L156L 0.13 TCGA-EE-A2GL-06 12 116422133 116422133 A C MED13L Silent p.R1461R 0.14 TCGA-EE-A2GL-06 12 123900289 123900289 C T RILPL2 3'UTR 0.18 TCGA-EE-A2GL-06 12 130648594 130648594 C T FZD10 Silent p.I369I 0.12 TCGA-EE-A2GL-06 12 13529165 13529165 G A C12orf36 Silent p.L59L 0.12 TCGA-EE-A2GL-06 12 21370151 21370151 G A SLCO1B1 Silent p.R532R 0.12 TCGA-EE-A2GL-06 12 31945009 31945009 G A H3F3C Missense_Mutation p.P31L 0.15 deleterious_low_confidence(0.02) benign(0.063) TCGA-EE-A2GL-06 12 44915913 44915913 G A NELL2 Missense_Mutation p.P732L 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GL-06 12 47629420 47629420 G A PCED1B Missense_Mutation p.E192K 0.11 tolerated(0.15) benign(0) TCGA-EE-A2GL-06 12 49390535 49390535 C T DDN Silent p.R708R 0.15 TCGA-EE-A2GL-06 12 49432233 49432233 G A KMT2D Missense_Mutation p.S2969L 0.14 benign(0.228) TCGA-EE-A2GL-06 12 49434651 49434651 G A KMT2D Missense_Mutation p.P2301L 0.13 possibly_damaging(0.852) TCGA-EE-A2GL-06 12 49434652 49434652 G A KMT2D Missense_Mutation p.P2301S 0.13 possibly_damaging(0.852) TCGA-EE-A2GL-06 12 50480090 50480090 C T SMARCD1 Silent p.I108I 0.08 TCGA-EE-A2GL-06 12 5153890 5153890 C T KCNA5 Silent p.L193L 0.16 TCGA-EE-A2GL-06 12 55759684 55759684 G A OR6C75 Missense_Mutation p.E264K 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.656) TCGA-EE-A2GL-06 12 7361078 7361078 C T PEX5 Nonsense_Mutation p.Q418* 0.20 TCGA-EE-A2GL-06 12 81112880 81112880 G A MYF5 3'UTR 0.12 TCGA-EE-A2GL-06 12 82147926 82147926 C T PPFIA2 Silent p.S25S 0.21 TCGA-EE-A2GL-06 13 103279436 103279436 C T TPP2 Missense_Mutation p.P287S 0.11 deleterious(0) probably_damaging(0.914) TCGA-EE-A2GL-06 13 23906876 23906876 G A SACS Silent p.P3713P 0.10 TCGA-EE-A2GL-06 13 38137495 38137495 C T POSTN Missense_Mutation p.R829Q 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-EE-A2GL-06 13 49772281 49772281 C T FNDC3A Missense_Mutation p.P885L 0.08 deleterious(0) probably_damaging(0.938) TCGA-EE-A2GL-06 13 51950221 51950221 C T INTS6 Silent p.L564L 0.19 TCGA-EE-A2GL-06 13 52728269 52728269 G A NEK3 Missense_Mutation p.L53F 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GL-06 13 53010508 53010508 G A VPS36 Missense_Mutation p.P90S 0.11 tolerated(0.62) benign(0.001) TCGA-EE-A2GL-06 13 84454713 84454713 C T SLITRK1 Silent p.K310K 0.15 TCGA-EE-A2GL-06 14 101351128 101351128 C T RTL1 5'UTR 0.12 TCGA-EE-A2GL-06 14 104123953 104123953 G T KLC1 Missense_Mutation p.R111L 0.09 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GL-06 14 104123955 104123955 C T KLC1 Missense_Mutation p.R112C 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 14 24108421 24108421 G A DHRS2 Silent p.R58R 0.17 TCGA-EE-A2GL-06 14 56084684 56084684 T C KTN1 Missense_Mutation p.F222L 0.13 tolerated(1) benign(0) TCGA-EE-A2GL-06 14 77319594 77319594 G A C14orf166B Missense_Mutation p.M283I 0.09 deleterious(0.03) benign(0.063) TCGA-EE-A2GL-06 15 24922056 24922056 C T NPAP1 Nonsense_Mutation p.R348* 0.14 TCGA-EE-A2GL-06 15 43044548 43044548 C T TTBK2 Missense_Mutation p.E966K 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 15 43552346 43552346 G A TGM5 Missense_Mutation p.R114W 0.08 tolerated(0.05) probably_damaging(0.956) TCGA-EE-A2GL-06 15 45387730 45387730 A G DUOX2 Silent p.L1382L 0.14 TCGA-EE-A2GL-06 15 53998215 53998215 G T WDR72 Nonsense_Mutation p.Y337* 0.17 TCGA-EE-A2GL-06 15 55838771 55838771 G A PYGO1 Missense_Mutation p.P237L 0.19 deleterious(0.01) benign(0.058) TCGA-EE-A2GL-06 15 66856293 66856293 C T LCTL Missense_Mutation p.R109Q 0.10 deleterious(0.05) benign(0.089) TCGA-EE-A2GL-06 15 72501167 72501167 G A PKM Missense_Mutation p.L211F 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A2GL-06 15 74627341 74627341 G A CCDC33 Missense_Mutation p.G684E 0.11 deleterious(0.04) possibly_damaging(0.57) TCGA-EE-A2GL-06 15 75654998 75654998 G A MAN2C1 Silent p.I294I 0.12 TCGA-EE-A2GL-06 15 78470956 78470956 C T ACSBG1 Missense_Mutation p.E568K 0.15 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GL-06 15 83455736 83455736 C T FSD2 Missense_Mutation p.G136E 0.07 tolerated(0.16) benign(0.342) TCGA-EE-A2GL-06 15 89401744 89401744 G A ACAN Silent p.G1976G 0.19 TCGA-EE-A2GL-06 16 1129746 1129746 C T SSTR5 Missense_Mutation p.S293F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 16 1260873 1260873 C T CACNA1H Silent p.S1375S 0.10 TCGA-EE-A2GL-06 16 16215945 16215945 C T ABCC1 Silent p.F1168F 0.11 TCGA-EE-A2GL-06 16 23847548 23847548 G A PRKCB Missense_Mutation p.V18M 0.13 tolerated(0.29) possibly_damaging(0.565) TCGA-EE-A2GL-06 16 2906157 2906157 C T PRSS22 Silent p.K69K 0.09 TCGA-EE-A2GL-06 16 29922374 29922374 G A KCTD13 Silent p.F226F 0.09 TCGA-EE-A2GL-06 16 30490500 30490500 C T ITGAL Missense_Mutation p.P139L 0.13 deleterious(0.02) benign(0.007) TCGA-EE-A2GL-06 16 30677847 30677847 C T FBRS Silent p.F596F 0.10 TCGA-EE-A2GL-06 16 32077387 32077387 A G IGHV3OR16-9 Translation_Start_Site p.E1? 0.15 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-EE-A2GL-06 16 3454462 3454462 G T ZNF174 Nonsense_Mutation p.E147* 0.09 TCGA-EE-A2GL-06 16 47189662 47189662 C T ITFG1 Missense_Mutation p.E603K 0.13 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2GL-06 16 67273330 67273330 G A FHOD1 Missense_Mutation p.P77S 0.12 tolerated(0.43) probably_damaging(0.974) TCGA-EE-A2GL-06 16 71318845 71318845 G A CMTR2 Missense_Mutation p.H327Y 0.12 tolerated(0.15) benign(0.001) TCGA-EE-A2GL-06 16 71482269 71482269 G A ZNF23 Silent p.I553I 0.11 TCGA-EE-A2GL-06 16 7568299 7568299 G A RBFOX1 Missense_Mutation p.E80K 0.09 deleterious(0) benign(0.381) TCGA-EE-A2GL-06 16 86546577 86546577 G A FOXF1 Silent p.K342K 0.12 TCGA-EE-A2GL-06 16 86546578 86546578 G A FOXF1 Missense_Mutation p.E343K 0.12 deleterious(0) benign(0.24) TCGA-EE-A2GL-06 16 89256854 89256854 G A CDH15 Silent p.V394V 0.13 TCGA-EE-A2GL-06 17 10351223 10351223 A G MYH4 Missense_Mutation p.L1626P 0.10 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GL-06 17 10440552 10440552 C T MYH2 Missense_Mutation p.G632E 0.15 tolerated(0.69) benign(0.002) TCGA-EE-A2GL-06 17 1494708 1494708 G A SLC43A2 Silent p.F262F 0.15 TCGA-EE-A2GL-06 17 15231371 15231371 G A TEKT3 Missense_Mutation p.H201Y 0.17 tolerated(0.1) benign(0.044) TCGA-EE-A2GL-06 17 16734763 16734763 G A KRT16P2 RNA 0.08 TCGA-EE-A2GL-06 17 18881077 18881077 T A FAM83G Silent p.S634S 0.14 TCGA-EE-A2GL-06 17 26692263 26692263 C T VTN 3'Flank 0.20 TCGA-EE-A2GL-06 17 34856791 34856791 A C MYO19 Silent p.L752L 0.14 TCGA-EE-A2GL-06 17 35346599 35346599 G T AATF Missense_Mutation p.M401I 0.15 deleterious(0.05) benign(0.065) TCGA-EE-A2GL-06 17 35346600 35346600 G A AATF Missense_Mutation p.D402N 0.15 deleterious(0) probably_damaging(0.925) TCGA-EE-A2GL-06 17 3839759 3839759 A C ATP2A3 Missense_Mutation p.F776V 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 17 38457848 38457848 C T CDC6 Silent p.T527T 0.08 TCGA-EE-A2GL-06 17 40169387 40169387 C T DNAJC7 Silent p.P16P 0.09 TCGA-EE-A2GL-06 17 42451818 42451818 C T ITGA2B Silent p.R988R 0.09 TCGA-EE-A2GL-06 17 43194126 43194126 G A PLCD3 Missense_Mutation p.S429F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 17 4722096 4722096 C T PLD2 Silent p.I717I 0.09 TCGA-EE-A2GL-06 17 48603480 48603480 G A MYCBPAP Missense_Mutation p.R717K 0.20 tolerated(0.91) benign(0.004) TCGA-EE-A2GL-06 17 48695472 48695472 C T CACNA1G Missense_Mutation p.L1764F 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 17 56232643 56232643 C T OR4D1 Silent p.L43L 0.09 TCGA-EE-A2GL-06 17 57648001 57648001 C T DHX40 Missense_Mutation p.R135C 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 17 61781861 61781861 G A STRADA Missense_Mutation p.P314S 0.14 tolerated(0.73) benign(0.079) TCGA-EE-A2GL-06 17 62083993 62083993 G A ICAM2 Missense_Mutation p.P20L 0.20 deleterious(0) benign(0.221) TCGA-EE-A2GL-06 17 62892216 62892216 G A LRRC37A3 Missense_Mutation p.P387L 0.11 tolerated(0.14) benign(0.067) TCGA-EE-A2GL-06 17 7130544 7130544 G C DVL2 Missense_Mutation p.P470A 0.08 tolerated(0.62) benign(0.105) TCGA-EE-A2GL-06 17 73569591 73569591 G A LLGL2 Missense_Mutation p.E919K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 17 73895042 73895042 G A MRPL38 Silent p.F344F 0.15 TCGA-EE-A2GL-06 17 7402610 7402610 C T POLR2A Missense_Mutation p.P491S 0.13 probably_damaging(0.997) TCGA-EE-A2GL-06 17 7637788 7637788 C T DNAH2 Missense_Mutation p.T247I 0.13 benign(0.034) TCGA-EE-A2GL-06 17 76396765 76396765 C T PGS1 Silent p.L237L 0.11 TCGA-EE-A2GL-06 17 76548857 76548857 G A DNAH17 Silent p.L737L 0.13 TCGA-EE-A2GL-06 17 79220800 79220800 C T SLC38A10 Silent p.Q709Q 0.16 TCGA-EE-A2GL-06 17 80543958 80543958 C G FOXK2 Silent p.A486A 0.12 TCGA-EE-A2GL-06 18 12984128 12984128 C T SEH1L Missense_Mutation p.P337S 0.21 tolerated_low_confidence(0.47) benign(0.001) TCGA-EE-A2GL-06 18 14511935 14511935 C T POTEC Missense_Mutation p.E531K 0.19 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-EE-A2GL-06 18 21343417 21343417 T C LAMA3 Missense_Mutation p.V371A 0.08 possibly_damaging(0.521) TCGA-EE-A2GL-06 18 31323465 31323465 C T ASXL3 Missense_Mutation p.S1218L 0.18 benign(0.342) TCGA-EE-A2GL-06 18 48190559 48190559 C T MAPK4 Silent p.I77I 0.15 TCGA-EE-A2GL-06 18 8376576 8376576 T G PTPRM Missense_Mutation p.V1148G 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 19 12911973 12911973 C T PRDX2 Missense_Mutation p.G35R 0.10 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2GL-06 19 14000264 14000264 C T C19orf57 Missense_Mutation p.D469N 0.11 tolerated(0.16) possibly_damaging(0.908) TCGA-EE-A2GL-06 19 15562672 15562672 C T RASAL3 Silent p.R990R 0.14 TCGA-EE-A2GL-06 19 15640642 15640642 C T CYP4F22 Silent p.I115I 0.09 TCGA-EE-A2GL-06 19 17283623 17283623 G A MYO9B Missense_Mutation p.R664Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 19 2433919 2433919 G A LMNB2 Missense_Mutation p.H463Y 0.10 tolerated(0.07) benign(0.247) TCGA-EE-A2GL-06 19 36332637 36332637 T C NPHS1 Missense_Mutation p.N932S 0.22 tolerated(0.06) benign(0.038) TCGA-EE-A2GL-06 19 37905009 37905009 G T ZNF569 Missense_Mutation p.T184N 0.15 tolerated(0.17) benign(0.133) TCGA-EE-A2GL-06 19 38643563 38643563 G A SIPA1L3 Missense_Mutation p.G1206D 0.12 tolerated(0.26) benign(0.269) TCGA-EE-A2GL-06 19 40009732 40009732 G A SELV Missense_Mutation p.E329K 0.09 deleterious(0.01) possibly_damaging(0.881) TCGA-EE-A2GL-06 19 40877597 40877597 G C PLD3 Silent p.V232V 0.50 TCGA-EE-A2GL-06 19 41898821 41898821 G A EXOSC5 Silent p.F71F 0.11 TCGA-EE-A2GL-06 19 43414918 43414918 C T PSG6 Missense_Mutation p.D174N 0.20 tolerated(0.43) benign(0.019) TCGA-EE-A2GL-06 19 43689221 43689221 C T PSG5 Missense_Mutation p.G48E 0.16 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2GL-06 19 43708311 43708311 G T PSG4 Missense_Mutation p.L53I 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GL-06 19 46832553 46832553 G A HIF3A Silent p.R510R 0.13 TCGA-EE-A2GL-06 19 49409139 49409139 C T NUCB1 Missense_Mutation p.P125S 0.16 tolerated(0.43) benign(0.103) TCGA-EE-A2GL-06 19 49514511 49514511 C T RUVBL2 Silent p.A315A 0.21 TCGA-EE-A2GL-06 19 49514512 49514512 C T RUVBL2 Silent p.L316L 0.20 TCGA-EE-A2GL-06 19 50944201 50944201 G A MYBPC2 Missense_Mutation p.E213K 0.28 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2GL-06 19 51920492 51920492 G C SIGLEC10 Missense_Mutation p.R89G 0.12 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2GL-06 19 53384496 53384496 G A ZNF320 Missense_Mutation p.H295Y 0.09 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GL-06 19 54257293 54257293 G A MIR527 RNA 0.17 TCGA-EE-A2GL-06 19 54561969 54561969 C T VSTM1 Missense_Mutation p.E18K 0.14 tolerated(0.05) possibly_damaging(0.905) TCGA-EE-A2GL-06 19 5456640 5456640 C G ZNRF4 Missense_Mutation p.R380G 0.09 deleterious(0.03) benign(0.001) TCGA-EE-A2GL-06 19 54823298 54823298 C T LILRA5 Missense_Mutation p.G82E 0.15 tolerated(0.06) probably_damaging(0.961) TCGA-EE-A2GL-06 19 55148324 55148324 C T LILRB1 Missense_Mutation p.H652Y 0.17 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GL-06 19 55396884 55396884 G A FCAR Missense_Mutation p.R103K 0.16 tolerated(0.23) benign(0.031) TCGA-EE-A2GL-06 19 55451638 55451638 C T NLRP7 Silent p.G183G 0.11 TCGA-EE-A2GL-06 19 55967743 55967743 G A ISOC2 Silent p.I37I 0.14 TCGA-EE-A2GL-06 19 58132817 58132817 C T ZNF134 3'UTR 0.10 TCGA-EE-A2GL-06 19 7626392 7626392 C T PNPLA6 Missense_Mutation p.L1358F 0.21 deleterious_low_confidence(0.02) benign(0.029) TCGA-EE-A2GL-06 19 9063015 9063015 C T MUC16 Missense_Mutation p.G8144E 0.15 unknown(0) TCGA-EE-A2GL-06 19 9087174 9087174 C T MUC16 Silent p.V1547V 0.09 TCGA-EE-A2GL-06 19 9088962 9088962 G A MUC16 Silent p.T951T 0.11 TCGA-EE-A2GL-06 1 10707917 10707917 C T CASZ1 Silent p.T1146T 0.07 TCGA-EE-A2GL-06 1 110051031 110051031 G A AMIGO1 Silent p.N168N 0.08 TCGA-EE-A2GL-06 1 110051032 110051032 T A AMIGO1 Missense_Mutation p.N168I 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 1 115218564 115218564 G A AMPD1 Silent p.F516F 0.28 TCGA-EE-A2GL-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.31 deleterious(0.01) benign(0.045) TCGA-EE-A2GL-06 1 1168182 1168182 C T B3GALT6 Missense_Mutation p.P175L 0.21 tolerated(0.09) benign(0.179) TCGA-EE-A2GL-06 1 118598527 118598527 C T SPAG17 Missense_Mutation p.E851K 0.17 deleterious(0) possibly_damaging(0.84) TCGA-EE-A2GL-06 1 12416123 12416123 C T VPS13D Missense_Mutation p.P3283S 0.09 probably_damaging(0.986) TCGA-EE-A2GL-06 1 12954433 12954433 G A PRAMEF10 Silent p.L284L 0.13 TCGA-EE-A2GL-06 1 152188335 152188335 C T HRNR Missense_Mutation p.G1924S 0.03 unknown(0) TCGA-EE-A2GL-06 1 152276277 152276277 G A FLG Silent p.S3695S 0.08 TCGA-EE-A2GL-06 1 152957746 152957746 C T SPRR1A Missense_Mutation p.P14S 0.17 tolerated(0.08) unknown(0) TCGA-EE-A2GL-06 1 153312963 153312963 G A PGLYRP4 Missense_Mutation p.H240Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GL-06 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2GL-06 1 157803059 157803059 G A CD5L Missense_Mutation p.S321F 0.08 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GL-06 1 158059518 158059518 C T KIRREL Silent p.I394I 0.13 TCGA-EE-A2GL-06 1 158262056 158262056 G A CD1C Missense_Mutation p.E171K 0.13 tolerated(0.61) benign(0.001) TCGA-EE-A2GL-06 1 158323802 158323802 C T CD1E Silent p.F8F 0.12 TCGA-EE-A2GL-06 1 160054080 160054080 G A KCNJ9 Missense_Mutation p.G87D 0.09 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GL-06 1 171553299 171553299 C T PRRC2C Silent p.S2536S 0.11 TCGA-EE-A2GL-06 1 175048471 175048471 C T TNN Silent p.L138L 0.15 TCGA-EE-A2GL-06 1 176681006 176681006 C T PAPPA2 Silent p.H1229H 0.10 TCGA-EE-A2GL-06 1 179603594 179603594 C T TDRD5 Nonsense_Mutation p.Q377* 0.12 TCGA-EE-A2GL-06 1 179609005 179609005 C T TDRD5 Nonsense_Mutation p.R518* 0.10 TCGA-EE-A2GL-06 1 182554562 182554562 A T RNASEL Missense_Mutation p.F460L 0.16 tolerated(0.15) benign(0.056) TCGA-EE-A2GL-06 1 19200962 19200962 G C ALDH4A1 Missense_Mutation p.A525G 0.17 tolerated(0.26) benign(0.219) TCGA-EE-A2GL-06 1 203680092 203680092 C T ATP2B4 Silent p.P629P 0.21 TCGA-EE-A2GL-06 1 204587262 204587262 G A LRRN2 Missense_Mutation p.S620F 0.23 tolerated(0.71) benign(0.015) TCGA-EE-A2GL-06 1 20474840 20474840 C T PLA2G2F Silent p.P194P 0.12 TCGA-EE-A2GL-06 1 20474841 20474841 C T PLA2G2F Missense_Mutation p.P195S 0.12 tolerated_low_confidence(0.06) benign(0.316) TCGA-EE-A2GL-06 1 209785234 209785234 C T CAMK1G Missense_Mutation p.P338L 0.36 deleterious(0.02) benign(0.008) TCGA-EE-A2GL-06 1 209785546 209785546 A C CAMK1G Missense_Mutation p.K442T 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.848) TCGA-EE-A2GL-06 1 214571288 214571288 C T PTPN14 Silent p.R242R 0.21 TCGA-EE-A2GL-06 1 21605716 21605716 C A ECE1 Missense_Mutation p.C83F 0.12 tolerated(0.23) benign(0.429) TCGA-EE-A2GL-06 1 228238562 228238562 G A WNT3A Silent p.R173R 0.09 TCGA-EE-A2GL-06 1 22837755 22837755 G A ZBTB40 Silent p.P639P 0.18 TCGA-EE-A2GL-06 1 231376911 231376911 C T C1orf131 5'UTR 0.11 TCGA-EE-A2GL-06 1 23240062 23240062 G A EPHB2 Silent p.%3D 0.18 TCGA-EE-A2GL-06 1 236154240 236154240 G A NID1 Silent p.P958P 0.11 TCGA-EE-A2GL-06 1 236154241 236154241 G A NID1 Missense_Mutation p.P958L 0.10 deleterious(0.03) benign(0.348) TCGA-EE-A2GL-06 1 27943740 27943740 C T FGR Missense_Mutation p.G166R 0.12 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GL-06 1 32084967 32084967 C T HCRTR1 Silent p.V58V 0.09 TCGA-EE-A2GL-06 1 34034989 34034989 C T CSMD2 Missense_Mutation p.E2708K 0.09 tolerated(0.19) possibly_damaging(0.794) TCGA-EE-A2GL-06 1 3624233 3624233 A G TP73 Missense_Mutation p.S103G 0.10 deleterious(0) benign(0.265) TCGA-EE-A2GL-06 1 39824448 39824448 C T MACF1 Missense_Mutation p.A1946V 0.10 benign(0.087) TCGA-EE-A2GL-06 1 39824449 39824449 C T MACF1 Silent p.A1946A 0.10 TCGA-EE-A2GL-06 1 42048937 42048937 G A HIVEP3 Missense_Mutation p.S511F 0.07 benign(0.004) TCGA-EE-A2GL-06 1 42628462 42628462 C T GUCA2A 3'UTR 0.15 TCGA-EE-A2GL-06 1 44437691 44437691 C T DPH2 Missense_Mutation p.P373S 0.23 tolerated(0.56) benign(0.063) TCGA-EE-A2GL-06 1 44437692 44437692 C T DPH2 Missense_Mutation p.P373L 0.24 tolerated(0.16) benign(0.216) TCGA-EE-A2GL-06 1 47505044 47505044 G A CYP4X1 Missense_Mutation p.D305N 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GL-06 1 55271814 55271814 G A C1orf177 Missense_Mutation p.G9R 0.56 deleterious_low_confidence(0.02) benign(0.08) TCGA-EE-A2GL-06 1 55271815 55271815 G A C1orf177 Missense_Mutation p.G9E 0.56 tolerated_low_confidence(0.05) benign(0.025) TCGA-EE-A2GL-06 1 57169911 57169911 G A PRKAA2 Missense_Mutation p.M352I 0.25 tolerated(0.28) benign(0.001) TCGA-EE-A2GL-06 1 57173220 57173220 C T PRKAA2 Missense_Mutation p.P498L 0.09 deleterious(0.02) benign(0.065) TCGA-EE-A2GL-06 1 62739414 62739414 G A KANK4 Silent p.L454L 0.15 TCGA-EE-A2GL-06 1 78958820 78958820 T A PTGFR Missense_Mutation p.I131N 0.11 deleterious(0) possibly_damaging(0.718) TCGA-EE-A2GL-06 1 8000063 8000063 C T TNFRSF9 5'UTR 0.11 TCGA-EE-A2GL-06 1 9019055 9019055 C T CA6 Silent p.F165F 0.18 TCGA-EE-A2GL-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.38 tolerated(0.25) probably_damaging(0.996) TCGA-EE-A2GL-06 20 18142719 18142719 C T CSRP2BP Missense_Mutation p.S313F 0.08 tolerated(0.4) benign(0.015) TCGA-EE-A2GL-06 20 18142720 18142720 C T CSRP2BP Silent p.S313S 0.08 TCGA-EE-A2GL-06 20 29956462 29956462 C T DEFB118 Silent p.L3L 0.09 TCGA-EE-A2GL-06 20 31572976 31572976 G A SUN5 Missense_Mutation p.P305S 0.14 tolerated(0.51) benign(0.422) TCGA-EE-A2GL-06 20 31620862 31620862 G A BPIFB6 Missense_Mutation p.G57E 0.14 deleterious(0.01) benign(0.272) TCGA-EE-A2GL-06 20 34021881 34021881 C T GDF5 Silent p.T444T 0.16 TCGA-EE-A2GL-06 20 35242766 35242766 C T SLA2 Missense_Mutation p.D203N 0.12 tolerated(0.9) benign(0.003) TCGA-EE-A2GL-06 20 3652877 3652877 G A ADAM33 Silent p.L501L 0.10 TCGA-EE-A2GL-06 20 37150215 37150215 C T RALGAPB Missense_Mutation p.P498L 0.10 tolerated(0.07) benign(0.003) TCGA-EE-A2GL-06 20 3766206 3766206 G A CENPB Silent p.L309L 0.14 TCGA-EE-A2GL-06 20 42788275 42788275 G A JPH2 Silent p.A384A 0.16 TCGA-EE-A2GL-06 20 43108650 43108650 A C TTPAL Missense_Mutation p.E4A 0.18 deleterious_low_confidence(0.03) benign(0.146) TCGA-EE-A2GL-06 20 61143604 61143604 G A C20orf166 5'Flank 0.12 TCGA-EE-A2GL-06 20 61485473 61485473 G A TCFL5 Silent p.L425L 0.08 TCGA-EE-A2GL-06 21 16337512 16337512 G A NRIP1 Missense_Mutation p.S1001L 0.22 tolerated(0.14) benign(0.145) TCGA-EE-A2GL-06 21 35895908 35895908 G A RCAN1 Missense_Mutation p.S118F 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GL-06 21 43277340 43277340 G A PRDM15 Missense_Mutation p.P443L 0.05 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A2GL-06 21 43808517 43808517 G A TMPRSS3 Silent p.F147F 0.13 TCGA-EE-A2GL-06 21 44589331 44589331 C T CRYAA Missense_Mutation p.S41L 0.12 tolerated(0.23) benign(0.052) TCGA-EE-A2GL-06 21 46032136 46032136 C T KRTAP10-8 Missense_Mutation p.S40F 0.14 deleterious(0) probably_damaging(0.951) TCGA-EE-A2GL-06 21 46595747 46595747 G A ADARB1 Missense_Mutation p.G44E 0.13 tolerated(0.06) possibly_damaging(0.657) TCGA-EE-A2GL-06 22 18347693 18347693 G A MICAL3 Silent p.A859A 0.12 TCGA-EE-A2GL-06 22 21384498 21384498 C T SLC7A4 Silent p.G375G 0.12 TCGA-EE-A2GL-06 22 22989317 22989317 G A GGTLC2 Silent p.G90G 0.11 TCGA-EE-A2GL-06 22 26164562 26164562 G A MYO18B Missense_Mutation p.G227R 0.20 tolerated_low_confidence(0.19) benign(0.01) TCGA-EE-A2GL-06 22 32810246 32810246 G A BPIFC 3'UTR 0.13 TCGA-EE-A2GL-06 22 41310302 41310302 C T XPNPEP3 Silent p.I343I 0.12 TCGA-EE-A2GL-06 22 41573197 41573197 C T EP300 Missense_Mutation p.L1828F 0.23 probably_damaging(0.979) TCGA-EE-A2GL-06 2 113950695 113950695 C T PSD4 Nonsense_Mutation p.R637* 0.11 TCGA-EE-A2GL-06 2 11706713 11706713 G A GREB1 Missense_Mutation p.D129N 0.07 tolerated(0.11) possibly_damaging(0.592) TCGA-EE-A2GL-06 2 133543088 133543088 C T NCKAP5 Silent p.S432S 0.11 TCGA-EE-A2GL-06 2 152534274 152534274 C T NEB Silent p.K1193K 0.09 TCGA-EE-A2GL-06 2 174224214 174224214 G A CDCA7 Missense_Mutation p.G127R 0.12 tolerated(0.17) possibly_damaging(0.737) TCGA-EE-A2GL-06 2 18112296 18112296 C T KCNS3 Silent p.F7F 0.15 TCGA-EE-A2GL-06 2 203776352 203776352 T C WDR12 5'UTR 0.12 TCGA-EE-A2GL-06 2 21228131 21228131 G A APOB Missense_Mutation p.S3870F 0.12 benign(0.206) TCGA-EE-A2GL-06 2 215884507 215884507 C T ABCA12 Missense_Mutation p.R434Q 0.13 tolerated(0.42) benign(0.006) TCGA-EE-A2GL-06 2 234078776 234078776 G A INPP5D Missense_Mutation p.G574E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 2 237374155 237374155 C T IQCA1 Missense_Mutation p.E307K 0.25 deleterious(0.01) benign(0.433) TCGA-EE-A2GL-06 2 242684288 242684288 C T D2HGDH Silent p.F283F 0.12 TCGA-EE-A2GL-06 2 27428297 27428297 T C SLC5A6 Missense_Mutation p.I219V 0.15 tolerated(0.3) benign(0.116) TCGA-EE-A2GL-06 2 30954239 30954239 C T CAPN13 Missense_Mutation p.G652R 0.15 tolerated(0.07) benign(0.356) TCGA-EE-A2GL-06 2 43519316 43519316 G A THADA Nonsense_Mutation p.Q1622* 0.06 TCGA-EE-A2GL-06 2 43519317 43519317 G A THADA Silent p.P1621P 0.06 TCGA-EE-A2GL-06 2 48898778 48898778 C T STON1-GTF2A1L Silent p.L1134L 0.18 TCGA-EE-A2GL-06 2 50779744 50779744 G A NRXN1 Silent p.F620F 0.14 TCGA-EE-A2GL-06 2 54482630 54482630 T A TSPYL6 Missense_Mutation p.D220V 0.07 deleterious(0) possibly_damaging(0.542) TCGA-EE-A2GL-06 2 55544901 55544901 G A CCDC88A Missense_Mutation p.S1133F 0.14 deleterious(0) possibly_damaging(0.601) TCGA-EE-A2GL-06 2 70503997 70503997 C T PCYOX1 Missense_Mutation p.P331S 0.09 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GL-06 2 71896732 71896732 T A DYSF Intron 0.12 TCGA-EE-A2GL-06 2 73298765 73298765 G A SFXN5 Missense_Mutation p.P24S 0.11 tolerated(0.59) benign(0.164) TCGA-EE-A2GL-06 2 85778939 85778939 G A GGCX Silent p.F535F 0.11 TCGA-EE-A2GL-06 2 85866352 85866352 C T USP39 Silent p.L374L 0.13 TCGA-EE-A2GL-06 2 97166202 97166202 C T NEURL3 RNA 0.17 TCGA-EE-A2GL-06 2 98264520 98264520 C T COX5B Silent p.C113C 0.15 TCGA-EE-A2GL-06 2 98264521 98264521 C T COX5B Missense_Mutation p.P114S 0.15 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2GL-06 3 100364864 100364864 C T GPR128 Missense_Mutation p.S341L 0.21 tolerated(0.21) benign(0.024) TCGA-EE-A2GL-06 3 105412372 105412372 G A CBLB Missense_Mutation p.P674S 0.18 tolerated_low_confidence(0.18) probably_damaging(0.939) TCGA-EE-A2GL-06 3 10960088 10960088 G A SLC6A11 Missense_Mutation p.G357D 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 3 112546213 112546213 C T CD200R1L Splice_Site p.X144_splice 0.11 TCGA-EE-A2GL-06 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.17 tolerated(0.24) benign(0.003) TCGA-EE-A2GL-06 3 137742645 137742645 G A CLDN18 Silent p.G122G 0.17 TCGA-EE-A2GL-06 3 140282952 140282952 G A CLSTN2 Missense_Mutation p.D878N 0.12 tolerated(0.05) benign(0.353) TCGA-EE-A2GL-06 3 140785598 140785598 G A SPSB4 Missense_Mutation p.G218S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 3 15297947 15297947 T G SH3BP5 Intron 0.21 TCGA-EE-A2GL-06 3 27761806 27761806 G A EOMES Missense_Mutation p.P298S 0.10 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GL-06 3 45823681 45823681 G A SLC6A20 Silent p.I52I 0.15 TCGA-EE-A2GL-06 3 48956246 48956246 G A ARIH2OS Missense_Mutation p.P113S 0.17 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A2GL-06 3 49848190 49848190 G A UBA7 Missense_Mutation p.L436F 0.06 tolerated(1) benign(0.035) TCGA-EE-A2GL-06 3 51430259 51430259 C T RBM15B Missense_Mutation p.P477S 0.13 deleterious(0) possibly_damaging(0.557) TCGA-EE-A2GL-06 3 51694052 51694052 C A RAD54L2 Silent p.I1109I 0.14 TCGA-EE-A2GL-06 3 51694053 51694053 C T RAD54L2 Missense_Mutation p.R1110C 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GL-06 3 51937102 51937102 C T IQCF1 Missense_Mutation p.E3K 0.15 tolerated_low_confidence(0.39) benign(0.082) TCGA-EE-A2GL-06 3 53263300 53263300 G A TKT Silent p.S428S 0.17 TCGA-EE-A2GL-06 3 54952852 54952852 G A LRTM1 Silent p.I224I 0.19 TCGA-EE-A2GL-06 3 62385086 62385086 C T CADPS Missense_Mutation p.D1353N 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GL-06 3 68055810 68055810 G A FAM19A1 Nonsense_Mutation p.W14* 0.10 TCGA-EE-A2GL-06 3 77684138 77684138 G A ROBO2 Missense_Mutation p.G1309E 0.09 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-EE-A2GL-06 3 9066956 9066956 G A SRGAP3 Missense_Mutation p.S556F 0.12 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2GL-06 4 100235078 100235078 T C ADH1B Missense_Mutation p.N243S 0.10 tolerated(0.22) benign(0.057) TCGA-EE-A2GL-06 4 100261809 100261809 G A ADH1C Missense_Mutation p.P296L 0.11 probably_damaging(0.992) TCGA-EE-A2GL-06 4 106888436 106888436 G A NPNT Silent p.G509G 0.09 TCGA-EE-A2GL-06 4 110972501 110972501 G A ELOVL6 Missense_Mutation p.A264V 0.11 tolerated(0.23) benign(0.001) TCGA-EE-A2GL-06 4 118006337 118006337 G A TRAM1L1 Silent p.S71S 0.13 TCGA-EE-A2GL-06 4 119952318 119952318 C T SYNPO2 Silent p.N796N 0.10 TCGA-EE-A2GL-06 4 164393616 164393616 G A TKTL2 Missense_Mutation p.S424F 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GL-06 4 183960159 183960159 C T FAM92A1P2 RNA 0.08 TCGA-EE-A2GL-06 4 186380140 186380140 A G CCDC110 Missense_Mutation p.L534S 0.20 tolerated(0.19) possibly_damaging(0.899) TCGA-EE-A2GL-06 4 187192920 187192920 C T F11 Silent p.T71T 0.08 TCGA-EE-A2GL-06 4 188924669 188924669 C T ZFP42 Silent p.F236F 0.14 TCGA-EE-A2GL-06 4 2833690 2833690 C T SH3BP2 Missense_Mutation p.S521F 0.21 deleterious_low_confidence(0) benign(0.322) TCGA-EE-A2GL-06 4 3417784 3417784 C T RGS12 Missense_Mutation p.A788V 0.10 deleterious(0.01) benign(0.109) TCGA-EE-A2GL-06 4 3417785 3417785 C T RGS12 Silent p.A788A 0.10 TCGA-EE-A2GL-06 4 36069761 36069761 C T ARAP2 Missense_Mutation p.R1628Q 0.18 tolerated(0.2) benign(0.107) TCGA-EE-A2GL-06 4 40832536 40832536 G A APBB2 Nonsense_Mutation p.R530* 0.10 TCGA-EE-A2GL-06 4 55131161 55131161 G C PDGFRA Missense_Mutation p.C235S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 4 57797292 57797292 C T REST Silent p.V756V 0.12 TCGA-EE-A2GL-06 4 57797293 57797293 C T REST Nonsense_Mutation p.Q757* 0.12 TCGA-EE-A2GL-06 4 79301095 79301095 T G FRAS1 Missense_Mutation p.W1170G 0.15 possibly_damaging(0.709) TCGA-EE-A2GL-06 4 8218683 8218683 G A SH3TC1 Splice_Site p.X210_splice 0.18 TCGA-EE-A2GL-06 4 84232034 84232034 C T HPSE Missense_Mutation p.S228N 0.11 tolerated(0.31) benign(0.327) TCGA-EE-A2GL-06 4 860181 860181 G T GAK Missense_Mutation p.P1005Q 0.08 deleterious(0) possibly_damaging(0.853) TCGA-EE-A2GL-06 4 9784016 9784016 C T DRD5 Silent p.I121I 0.11 TCGA-EE-A2GL-06 5 132232412 132232412 G A AFF4 Missense_Mutation p.S637F 0.19 deleterious(0.03) possibly_damaging(0.657) TCGA-EE-A2GL-06 5 139060751 139060751 C T CXXC5 Missense_Mutation p.P215S 0.09 tolerated(0.17) probably_damaging(0.996) TCGA-EE-A2GL-06 5 140480581 140480581 C T PCDHB3 Silent p.F116F 0.11 TCGA-EE-A2GL-06 5 140605331 140605331 G A PCDHB14 Missense_Mutation p.E752K 0.09 deleterious_low_confidence(0.02) benign(0.217) TCGA-EE-A2GL-06 5 140725727 140725727 C T PCDHGA3 Silent p.I709I 0.17 TCGA-EE-A2GL-06 5 140756033 140756033 C T PCDHGA6 Nonsense_Mutation p.Q795* 0.11 TCGA-EE-A2GL-06 5 147040888 147040888 C T JAKMIP2 Missense_Mutation p.E84K 0.17 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GL-06 5 1474742 1474742 C T LPCAT1 Missense_Mutation p.E320K 0.14 tolerated(0.24) benign(0.018) TCGA-EE-A2GL-06 5 1474743 1474743 C T LPCAT1 Silent p.A319A 0.14 TCGA-EE-A2GL-06 5 150947448 150947448 C T FAT2 Missense_Mutation p.G349S 0.14 benign(0.044) TCGA-EE-A2GL-06 5 154393378 154393378 G A KIF4B 5'UTR 0.20 TCGA-EE-A2GL-06 5 163322 163322 G A PLEKHG4B Silent p.G689G 0.16 TCGA-EE-A2GL-06 5 176794828 176794828 T G RGS14 Splice_Site p.X247_splice 0.18 TCGA-EE-A2GL-06 5 176958471 176958471 G A FAM193B Intron 0.15 TCGA-EE-A2GL-06 5 176958472 176958472 G T FAM193B Intron 0.15 TCGA-EE-A2GL-06 5 19747249 19747249 C T CDH18 Missense_Mutation p.D109N 0.12 tolerated(0.16) probably_damaging(0.998) TCGA-EE-A2GL-06 5 26881634 26881634 C T CDH9 Missense_Mutation p.D661N 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 5 32074434 32074434 G A PDZD2 Nonsense_Mutation p.W1074* 0.14 TCGA-EE-A2GL-06 5 34911702 34911702 C G RAD1 Missense_Mutation p.E175Q 0.12 tolerated(0.07) possibly_damaging(0.832) TCGA-EE-A2GL-06 5 34911751 34911751 C A RAD1 Silent p.L158L 0.12 TCGA-EE-A2GL-06 5 35955811 35955811 G A UGT3A1 Missense_Mutation p.R411W 0.10 tolerated(0.05) benign(0.003) TCGA-EE-A2GL-06 5 36035968 36035968 C T UGT3A2 Silent p.A468A 0.12 TCGA-EE-A2GL-06 5 38933161 38933161 C T OSMR Missense_Mutation p.P852L 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-EE-A2GL-06 5 5461342 5461342 C T KIAA0947 Missense_Mutation p.S632F 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 5 63257242 63257242 C T HTR1A Nonsense_Mutation p.W102* 0.17 TCGA-EE-A2GL-06 5 72858543 72858543 A C ANKRA2 Missense_Mutation p.I55R 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2GL-06 5 73931417 73931417 G A ENC1 Silent p.F298F 0.12 TCGA-EE-A2GL-06 5 75914172 75914172 G A F2RL2 Silent p.F120F 0.13 TCGA-EE-A2GL-06 5 76627230 76627230 G A PDE8B Silent p.S218S 0.18 TCGA-EE-A2GL-06 5 94022323 94022323 C T ANKRD32 Missense_Mutation p.S674F 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GL-06 5 96065389 96065389 C T CAST Missense_Mutation p.S129L 0.13 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A2GL-06 6 158349733 158349733 C T SNX9 Silent p.G429G 0.25 TCGA-EE-A2GL-06 6 160517543 160517543 C T IGF2R Missense_Mutation p.T2243I 0.11 tolerated(0.11) possibly_damaging(0.745) TCGA-EE-A2GL-06 6 167438348 167438348 C T FGFR1OP Silent p.S295S 0.10 TCGA-EE-A2GL-06 6 17539604 17539604 C T CAP2 Silent p.F247F 0.20 TCGA-EE-A2GL-06 6 25799037 25799037 T C SLC17A1 Silent p.K460K 0.17 TCGA-EE-A2GL-06 6 30672858 30672858 G A MDC1 Missense_Mutation p.P1368S 0.07 tolerated(0.18) benign(0.03) TCGA-EE-A2GL-06 6 31918995 31918995 G A CFB Missense_Mutation p.E1146K 0.09 tolerated(0.13) possibly_damaging(0.879) TCGA-EE-A2GL-06 6 32190333 32190333 G A NOTCH4 Nonsense_Mutation p.Q136* 0.12 TCGA-EE-A2GL-06 6 32190334 32190334 G A NOTCH4 Silent p.I135I 0.12 TCGA-EE-A2GL-06 6 32811811 32811811 G A PSMB8 5'UTR 0.18 TCGA-EE-A2GL-06 6 33139255 33139255 C T COL11A2 Missense_Mutation p.D997N 0.14 possibly_damaging(0.728) TCGA-EE-A2GL-06 6 33423956 33423956 C T ZBTB9 Missense_Mutation p.P360L 0.11 deleterious(0.02) probably_damaging(0.918) TCGA-EE-A2GL-06 6 37138792 37138792 C T PIM1 Silent p.S75S 0.14 TCGA-EE-A2GL-06 6 43030828 43030828 G A KLC4 Silent p.K162K 0.08 TCGA-EE-A2GL-06 6 43402442 43402442 C T ABCC10 Silent p.C488C 0.26 TCGA-EE-A2GL-06 6 43483726 43483726 G T YIPF3 Missense_Mutation p.D63E 0.11 tolerated(1) benign(0.003) TCGA-EE-A2GL-06 6 49802925 49802925 C T CRISP1 3'UTR 0.12 TCGA-EE-A2GL-06 6 56846585 56846585 A G BEND6 5'UTR 0.17 TCGA-EE-A2GL-06 6 73904456 73904456 C T KCNQ5 Silent p.S725S 0.11 TCGA-EE-A2GL-06 6 7568053 7568053 G A DSP Missense_Mutation p.G394R 0.31 benign(0.264) TCGA-EE-A2GL-06 6 75797361 75797361 G A COL12A1 Missense_Mutation p.P3038L 0.11 benign(0.093) TCGA-EE-A2GL-06 6 90402272 90402272 G A MDN1 Missense_Mutation p.P3493S 0.13 benign(0.114) TCGA-EE-A2GL-06 6 97246999 97246999 C T GPR63 Nonsense_Mutation p.W203* 0.14 TCGA-EE-A2GL-06 7 100198504 100198504 C T FBXO24 Silent p.P613P 0.21 TCGA-EE-A2GL-06 7 100674976 100674976 G A MUC17 Silent p.S93S 0.24 TCGA-EE-A2GL-06 7 112462260 112462260 G A C7orf60 Missense_Mutation p.P253S 0.21 tolerated(0.07) probably_damaging(0.961) TCGA-EE-A2GL-06 7 123517096 123517096 G A HYAL4 Missense_Mutation p.D445N 0.17 tolerated(0.41) benign(0.012) TCGA-EE-A2GL-06 7 127253886 127253886 G A PAX4 Silent p.P154P 0.26 TCGA-EE-A2GL-06 7 129845331 129845331 C T TMEM209 5'UTR 0.12 TCGA-EE-A2GL-06 7 130295862 130295862 G A COPG2 Silent p.I233I 0.21 TCGA-EE-A2GL-06 7 130417854 130417854 C T KLF14 3'UTR 0.19 TCGA-EE-A2GL-06 7 138432301 138432301 T G ATP6V0A4 Missense_Mutation p.T397P 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 7 142609822 142609822 G C TRPV5 Silent p.L538L 0.22 TCGA-EE-A2GL-06 7 143771756 143771756 G A OR2A25 Nonsense_Mutation p.W148* 0.17 TCGA-EE-A2GL-06 7 144098959 144098959 C T NOBOX Intron 0.19 TCGA-EE-A2GL-06 7 146825856 146825856 G A CNTNAP2 Missense_Mutation p.M337I 0.10 tolerated(0.6) benign(0.055) TCGA-EE-A2GL-06 7 149557631 149557631 G A ZNF862 Missense_Mutation p.R461K 0.13 tolerated(0.11) probably_damaging(0.99) TCGA-EE-A2GL-06 7 150556110 150556110 G A AOC1 Silent p.Q610Q 0.18 TCGA-EE-A2GL-06 7 155604658 155604658 C T SHH Silent p.E53E 0.24 TCGA-EE-A2GL-06 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.15 tolerated(0.11) benign(0.16) TCGA-EE-A2GL-06 7 21934593 21934593 C T DNAH11 Missense_Mutation p.P4349L 0.13 probably_damaging(0.984) TCGA-EE-A2GL-06 7 34009962 34009962 G A BMPER Missense_Mutation p.G142R 0.12 tolerated(0.13) benign(0.001) TCGA-EE-A2GL-06 7 55874819 55874819 C T SEPT14 Missense_Mutation p.G317D 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GL-06 7 65842497 65842497 G A LINC00174 RNA 0.23 TCGA-EE-A2GL-06 7 70881033 70881033 G A WBSCR17 Missense_Mutation p.E250K 0.15 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GL-06 7 82996900 82996900 C T SEMA3E 3'UTR 0.17 TCGA-EE-A2GL-06 7 86542321 86542321 G A KIAA1324L Missense_Mutation p.S644F 0.42 deleterious(0.03) benign(0.359) TCGA-EE-A2GL-06 7 98941935 98941935 G A ARPC1A Silent p.K63K 0.10 TCGA-EE-A2GL-06 8 106813462 106813462 C T ZFPM2 Silent p.L384L 0.12 TCGA-EE-A2GL-06 8 106813481 106813481 C A ZFPM2 Missense_Mutation p.L391I 0.12 tolerated(0.2) benign(0.004) TCGA-EE-A2GL-06 8 107705067 107705067 T A OXR1 Missense_Mutation p.F214I 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 8 11407733 11407733 C T BLK Missense_Mutation p.A145V 0.08 tolerated(0.45) benign(0.003) TCGA-EE-A2GL-06 8 11420487 11420487 G A BLK Splice_Site p.X394_splice 0.10 TCGA-EE-A2GL-06 8 11420488 11420488 G A BLK Missense_Mutation p.G394E 0.10 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GL-06 8 124206263 124206263 G A FAM83A Splice_Site p.X217_splice 0.11 TCGA-EE-A2GL-06 8 133182620 133182620 C T KCNQ3 Nonsense_Mutation p.W399* 0.13 TCGA-EE-A2GL-06 8 133858053 133858053 G A PHF20L1 Missense_Mutation p.G980E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 8 142225904 142225904 G A SLC45A4 Missense_Mutation p.S581F 0.07 tolerated(0.46) probably_damaging(0.997) TCGA-EE-A2GL-06 8 2092691 2092691 T C MYOM2 Missense_Mutation p.V1395A 0.13 deleterious(0.04) benign(0.217) TCGA-EE-A2GL-06 8 27950643 27950643 G A ELP3 5'UTR 0.27 TCGA-EE-A2GL-06 8 27950644 27950644 G C ELP3 5'UTR 0.33 TCGA-EE-A2GL-06 8 39564371 39564371 C T ADAM18 Silent p.F655F 0.24 TCGA-EE-A2GL-06 8 39587442 39587442 G A ADAM18 Missense_Mutation p.D735N 0.20 tolerated_low_confidence(1) benign(0.009) TCGA-EE-A2GL-06 8 41547811 41547811 C T ANK1 Silent p.A1387A 0.10 TCGA-EE-A2GL-06 8 53085133 53085133 C T ST18 Missense_Mutation p.M96I 0.13 tolerated(0.43) benign(0) TCGA-EE-A2GL-06 8 6873426 6873426 G A DEFA3 3'UTR 0.33 TCGA-EE-A2GL-06 8 69033271 69033271 G A PREX2 Silent p.R1237R 0.10 TCGA-EE-A2GL-06 8 73480025 73480025 C T KCNB2 Missense_Mutation p.S19F 0.21 deleterious(0) probably_damaging(0.923) TCGA-EE-A2GL-06 8 73480026 73480026 C T KCNB2 Silent p.S19S 0.20 TCGA-EE-A2GL-06 8 77766838 77766838 C T ZFHX4 Missense_Mutation p.P2561S 0.22 possibly_damaging(0.465) TCGA-EE-A2GL-06 8 95897774 95897774 G A CCNE2 Missense_Mutation p.P205S 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GL-06 9 100862240 100862240 C T TRIM14 Silent p.Q170Q 0.17 TCGA-EE-A2GL-06 9 107380180 107380180 G A OR13C9 Silent p.F102F 0.18 TCGA-EE-A2GL-06 9 128083743 128083743 A C GAPVD1 Missense_Mutation p.Q545P 0.07 tolerated(0.21) probably_damaging(0.953) TCGA-EE-A2GL-06 9 132565484 132565484 G A TOR1B 5'UTR 0.13 TCGA-EE-A2GL-06 9 132678258 132678258 A C FNBP1 Missense_Mutation p.L391R 0.14 tolerated(0.09) benign(0.007) TCGA-EE-A2GL-06 9 136645046 136645046 C T VAV2 Missense_Mutation p.G586R 0.18 tolerated(0.49) benign(0.001) TCGA-EE-A2GL-06 9 32631080 32631080 G A TAF1L Missense_Mutation p.L1500F 0.16 tolerated(0.3) benign(0.084) TCGA-EE-A2GL-06 9 6328493 6328493 C T TPD52L3 5'UTR 0.15 TCGA-EE-A2GL-06 9 77448962 77448962 G A TRPM6 Silent p.I207I 0.13 TCGA-EE-A2GL-06 9 79320203 79320203 C T PRUNE2 Silent p.P2329P 0.27 TCGA-EE-A2GL-06 9 90503330 90503330 G A SPATA31E1 Missense_Mutation p.D1310N 0.17 tolerated(0.32) possibly_damaging(0.544) TCGA-EE-A2GL-06 X 10085396 10085396 C T WWC3 Missense_Mutation p.P433S 0.18 tolerated(0.2) benign(0.343) TCGA-EE-A2GL-06 X 102004256 102004256 C T BHLHB9 Silent p.F111F 0.17 TCGA-EE-A2GL-06 X 105168906 105168906 C T NRK Silent p.V1066V 0.20 TCGA-EE-A2GL-06 X 107554042 107554042 C T COL4A6 Missense_Mutation p.G28E 0.10 unknown(0) TCGA-EE-A2GL-06 X 123654524 123654524 C T TENM1 Silent p.T1048T 0.33 TCGA-EE-A2GL-06 X 130222768 130222768 C T ARHGAP36 3'UTR 0.14 TCGA-EE-A2GL-06 X 132161158 132161158 A G USP26 Missense_Mutation p.L364P 0.10 deleterious(0) possibly_damaging(0.603) TCGA-EE-A2GL-06 X 135579838 135579838 G A HTATSF1 5'UTR 0.10 TCGA-EE-A2GL-06 X 135579839 135579839 G A HTATSF1 5'UTR 0.10 TCGA-EE-A2GL-06 X 13645196 13645196 T G EGFL6 Missense_Mutation p.L452R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GL-06 X 140335618 140335618 C T SPANXC 3'UTR 0.11 TCGA-EE-A2GL-06 X 150868496 150868496 G A PRRG3 Silent p.S12S 0.12 TCGA-EE-A2GL-06 X 151123984 151123984 G A GABRE Silent p.F331F 0.17 TCGA-EE-A2GL-06 X 151283948 151283948 G A RP11-1007I13.4 RNA 0.11 TCGA-EE-A2GL-06 X 151283949 151283949 C A RP11-1007I13.4 RNA 0.11 TCGA-EE-A2GL-06 X 152159672 152159672 C T PNMA5 Silent p.R157R 0.10 TCGA-EE-A2GL-06 X 153219122 153219122 G A HCFC1 Missense_Mutation p.S1478F 0.12 deleterious_low_confidence(0.01) benign(0.195) TCGA-EE-A2GL-06 X 153626929 153626929 G A RPL10 Intron 0.14 TCGA-EE-A2GL-06 X 153697519 153697519 C T PLXNA3 Missense_Mutation p.P1519S 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GL-06 X 18924613 18924613 C T PHKA2 Missense_Mutation p.G936R 0.14 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GL-06 X 24859900 24859900 C T POLA1 Missense_Mutation p.P1284S 0.15 tolerated(0.22) benign(0.378) TCGA-EE-A2GL-06 X 35820805 35820805 G A MAGEB16 Missense_Mutation p.M164I 0.08 tolerated(0.56) benign(0.076) TCGA-EE-A2GL-06 X 39932522 39932522 G A BCOR Missense_Mutation p.P693S 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2GL-06 X 43656393 43656393 G A MAOB Silent p.I199I 0.17 TCGA-EE-A2GL-06 X 47035967 47035967 G C RBM10 Missense_Mutation p.E215D 0.16 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GL-06 X 47039321 47039321 C T RBM10 Missense_Mutation p.S315F 0.26 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GL-06 X 47509890 47509890 C T ELK1 5'Flank 0.08 TCGA-EE-A2GL-06 X 48840277 48840277 T C GRIPAP1 Silent p.S394S 0.09 TCGA-EE-A2GL-06 X 51643356 51643356 G A MAGED1 Silent p.E697E 0.19 TCGA-EE-A2GL-06 X 69497290 69497290 G A ARR3 Missense_Mutation p.E174K 0.09 tolerated(1) benign(0.01) TCGA-EE-A2GL-06 X 70598119 70598119 C T TAF1 Missense_Mutation p.S343F 0.10 deleterious(0.02) possibly_damaging(0.664) TCGA-EE-A2GL-06 X 71360043 71360043 C T NHSL2 Missense_Mutation p.P882L 0.09 tolerated(0.18) benign(0.03) TCGA-EE-A2GL-06 X 8433873 8433873 G A VCX3B Missense_Mutation p.A64T 0.04 tolerated_low_confidence(0.19) unknown(0) TCGA-EE-A2GM-06 10 100019161 100019161 C T LOXL4 Missense_Mutation p.D230N 0.69 tolerated(0.25) benign(0.135) TCGA-EE-A2GM-06 10 105971772 105971772 G A WDR96 Missense_Mutation p.T243I 0.87 tolerated(0.05) benign(0.192) TCGA-EE-A2GM-06 10 114059256 114059256 G A TECTB Missense_Mutation p.D281N 0.84 tolerated(0.49) benign(0.119) TCGA-EE-A2GM-06 10 123903146 123903146 C T TACC2 Missense_Mutation p.S1920L 0.84 benign(0.002) TCGA-EE-A2GM-06 10 124380834 124380834 C T DMBT1 Missense_Mutation p.P1720L 0.84 tolerated(0.12) probably_damaging(0.994) TCGA-EE-A2GM-06 10 21120139 21120139 C T NEBL Missense_Mutation p.E553K 0.83 tolerated(0.36) benign(0.21) TCGA-EE-A2GM-06 10 24813542 24813542 C T KIAA1217 Missense_Mutation p.S916F 0.89 deleterious(0.01) benign(0.16) TCGA-EE-A2GM-06 10 27366341 27366341 G A ANKRD26 Missense_Mutation p.H335Y 0.75 tolerated(0.7) benign(0.422) TCGA-EE-A2GM-06 10 27454413 27454413 T A MASTL Silent p.P252P 0.76 TCGA-EE-A2GM-06 10 5009336 5009336 G A AKR1C1 Intron 0.91 TCGA-EE-A2GM-06 10 50530868 50530868 C T C10orf71 Missense_Mutation p.S93L 0.79 deleterious(0.01) benign(0.172) TCGA-EE-A2GM-06 10 61832809 61832809 C T ANK3 Silent p.E2610E 0.89 TCGA-EE-A2GM-06 10 6255623 6255623 C T PFKFB3 Silent p.I38I 0.85 TCGA-EE-A2GM-06 10 64968404 64968404 G A JMJD1C Nonsense_Mutation p.Q1009* 0.85 TCGA-EE-A2GM-06 10 69882036 69882036 C T MYPN Missense_Mutation p.P281S 0.85 tolerated(0.3) benign(0.173) TCGA-EE-A2GM-06 10 71392586 71392586 C T C10orf35 Missense_Mutation p.P46L 0.67 tolerated(0.1) benign(0.002) TCGA-EE-A2GM-06 10 71697410 71697410 G A COL13A1 Missense_Mutation p.G595E 0.81 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 10 75548522 75548522 T A ZSWIM8 Silent p.P101P 0.80 TCGA-EE-A2GM-06 10 75548547 75548547 T A ZSWIM8 Missense_Mutation p.F110I 0.84 deleterious(0) possibly_damaging(0.6) TCGA-EE-A2GM-06 10 78869955 78869955 C T KCNMA1 Missense_Mutation p.M369I 0.80 tolerated(0.93) benign(0.059) TCGA-EE-A2GM-06 10 81317056 81317056 C T SFTPA2 Missense_Mutation p.R219Q 0.77 tolerated(0.27) benign(0.007) TCGA-EE-A2GM-06 10 90074235 90074235 C T RNLS Nonsense_Mutation p.W288* 0.72 TCGA-EE-A2GM-06 10 90074236 90074236 C T RNLS Nonsense_Mutation p.W288* 0.74 TCGA-EE-A2GM-06 10 99344353 99344353 C T PI4K2A 5'UTR 0.89 TCGA-EE-A2GM-06 11 101868451 101868451 C T KIAA1377 3'UTR 0.38 TCGA-EE-A2GM-06 11 10500130 10500130 G A AMPD3 Silent p.Q102Q 0.36 TCGA-EE-A2GM-06 11 111156656 111156656 C T C11orf53 Silent p.P196P 0.41 TCGA-EE-A2GM-06 11 113196301 113196301 C T TTC12 Silent p.I126I 0.59 TCGA-EE-A2GM-06 11 113270695 113270695 G A ANKK1 Silent p.Q668Q 0.34 TCGA-EE-A2GM-06 11 113661321 113661321 C T ATF4P4 RNA 0.56 TCGA-EE-A2GM-06 11 116633462 116633462 G C BUD13 Silent p.S281S 0.38 TCGA-EE-A2GM-06 11 117789491 117789491 C T TMPRSS13 Silent p.G28G 0.36 TCGA-EE-A2GM-06 11 118183553 118183553 G A CD3E Silent p.A108A 0.56 TCGA-EE-A2GM-06 11 118772485 118772485 G A BCL9L Missense_Mutation p.T656I 0.12 benign(0.014) TCGA-EE-A2GM-06 11 118916501 118916501 G A HYOU1 Missense_Mutation p.P977L 0.17 deleterious(0.01) benign(0.342) TCGA-EE-A2GM-06 11 118916502 118916502 G A HYOU1 Missense_Mutation p.P977S 0.18 tolerated(0.22) benign(0.011) TCGA-EE-A2GM-06 11 121483501 121483501 G A SORL1 Silent p.R1793R 0.48 TCGA-EE-A2GM-06 11 121500230 121500230 G A SORL1 Missense_Mutation p.M2201I 0.68 deleterious(0.03) probably_damaging(0.985) TCGA-EE-A2GM-06 11 123811205 123811205 G A OR4D5 Silent p.V294V 0.55 TCGA-EE-A2GM-06 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.54 tolerated(1) benign(0) TCGA-EE-A2GM-06 11 123900987 123900987 A G OR10G8 Missense_Mutation p.I220V 0.26 deleterious(0.01) possibly_damaging(0.644) TCGA-EE-A2GM-06 11 123988472 123988472 C T VWA5A Missense_Mutation p.P46S 0.20 deleterious(0.04) possibly_damaging(0.855) TCGA-EE-A2GM-06 11 124190007 124190007 G A OR8D2 Silent p.L29L 0.14 TCGA-EE-A2GM-06 11 124413431 124413431 C T OR8B12 Silent p.G40G 0.58 TCGA-EE-A2GM-06 11 124637200 124637200 C T MSANTD2 Missense_Mutation p.D466N 0.54 tolerated_low_confidence(0.16) benign(0.005) TCGA-EE-A2GM-06 11 125778110 125778110 G A DDX25 Missense_Mutation p.G111R 0.43 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GM-06 11 1272716 1272716 C T MUC5B Missense_Mutation p.S4869F 0.30 unknown(0) TCGA-EE-A2GM-06 11 129739560 129739560 C A NFRKB Silent p.G1145G 0.29 TCGA-EE-A2GM-06 11 16119221 16119221 G A SOX6 Silent p.P304P 0.33 TCGA-EE-A2GM-06 11 16119222 16119222 G A SOX6 Missense_Mutation p.P304L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 11 16340058 16340058 G A SOX6 Missense_Mutation p.L127F 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GM-06 11 24927567 24927567 G A LUZP2 Missense_Mutation p.G143R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 11 26582706 26582706 G A MUC15 Missense_Mutation p.P331L 0.62 deleterious(0) benign(0.187) TCGA-EE-A2GM-06 11 34477579 34477579 C T CAT Missense_Mutation p.L245F 0.39 tolerated(0.08) probably_damaging(0.937) TCGA-EE-A2GM-06 11 36597233 36597233 C T RAG1 Silent p.S793S 0.42 TCGA-EE-A2GM-06 11 3661290 3661290 G A ART5 Silent p.L123L 0.43 TCGA-EE-A2GM-06 11 46406896 46406896 G T CHRM4 Silent p.A404A 0.42 TCGA-EE-A2GM-06 11 48267327 48267327 G A OR4X2 Silent p.G224G 0.56 TCGA-EE-A2GM-06 11 4843416 4843416 C T OR51F2 Silent p.L267L 0.35 TCGA-EE-A2GM-06 11 5172665 5172665 G A OR52A1 Missense_Mutation p.S312L 0.44 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-EE-A2GM-06 11 5221910 5221910 C T OR51V1 Missense_Mutation p.M7I 0.36 tolerated_low_confidence(0.26) benign(0.019) TCGA-EE-A2GM-06 11 5275669 5275669 C A HBG2 Missense_Mutation p.M56I 0.32 tolerated(0.2) benign(0.17) TCGA-EE-A2GM-06 11 5322877 5322877 G A OR51B4 Silent p.F100F 0.30 TCGA-EE-A2GM-06 11 5373196 5373196 C T OR51B6 Silent p.S153S 0.33 TCGA-EE-A2GM-06 11 5373230 5373230 C T OR51B6 Missense_Mutation p.P165S 0.38 tolerated(0.22) benign(0.053) TCGA-EE-A2GM-06 11 5566159 5566159 C T OR52H1 Missense_Mutation p.D199N 0.40 tolerated(0.12) benign(0.181) TCGA-EE-A2GM-06 11 5776645 5776645 G A OR52N4 Silent p.R225R 0.54 TCGA-EE-A2GM-06 11 57982436 57982436 C T OR1S1 Missense_Mutation p.L74F 0.44 tolerated(1) benign(0.003) TCGA-EE-A2GM-06 11 5906298 5906298 C T OR52E4 Missense_Mutation p.S259F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 11 5969167 5969167 C T OR56A3 Silent p.T197T 0.33 TCGA-EE-A2GM-06 11 60671330 60671330 G A PRPF19 Missense_Mutation p.S8F 0.53 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GM-06 11 62293766 62293766 G A AHNAK Missense_Mutation p.S2708F 0.37 probably_damaging(0.999) TCGA-EE-A2GM-06 11 6453222 6453222 G A HPX Silent p.T287T 0.33 TCGA-EE-A2GM-06 11 67265651 67265651 A G PITPNM1 Missense_Mutation p.Y543H 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 11 7111361 7111361 C T RBMXL2 Missense_Mutation p.S337L 0.26 tolerated(0.25) benign(0) TCGA-EE-A2GM-06 11 74876923 74876923 C T SLCO2B1 Missense_Mutation p.A126V 0.28 deleterious(0.01) benign(0.36) TCGA-EE-A2GM-06 11 76063325 76063325 C A PRKRIR Missense_Mutation p.R290I 0.29 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GM-06 11 76371224 76371224 C T LRRC32 Silent p.L471L 0.56 TCGA-EE-A2GM-06 11 77835109 77835109 G A ALG8 Missense_Mutation p.S109F 0.45 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GM-06 11 8159983 8159983 G A RIC3 Intron 0.30 TCGA-EE-A2GM-06 11 82879498 82879498 C T PCF11 Silent p.F707F 0.35 TCGA-EE-A2GM-06 11 92085931 92085931 G A FAT3 Missense_Mutation p.R218Q 0.44 possibly_damaging(0.889) TCGA-EE-A2GM-06 11 92087823 92087823 G A FAT3 Missense_Mutation p.E849K 0.35 possibly_damaging(0.676) TCGA-EE-A2GM-06 11 93754684 93754684 G A HEPHL1 Silent p.G50G 0.32 TCGA-EE-A2GM-06 12 100431479 100431479 G A UHRF1BP1L Missense_Mutation p.L1444F 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 12 107048058 107048058 C T RFX4 Missense_Mutation p.L91F 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GM-06 12 108011998 108011998 G A BTBD11 Silent p.E765E 0.56 TCGA-EE-A2GM-06 12 108011999 108011999 G A BTBD11 Missense_Mutation p.E766K 0.54 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GM-06 12 110252270 110252270 C T TRPV4 Missense_Mutation p.G111D 0.21 tolerated(0.06) benign(0.024) TCGA-EE-A2GM-06 12 112645751 112645751 G A HECTD4 Silent p.T2540T 0.62 TCGA-EE-A2GM-06 12 113745600 113745600 G A SLC8B1 Missense_Mutation p.A436V 0.47 tolerated(0.37) benign(0.044) TCGA-EE-A2GM-06 12 117465253 117465253 G A FBXW8 Silent p.V532V 0.57 TCGA-EE-A2GM-06 12 117768733 117768733 G A NOS1 Missense_Mutation p.R48C 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GM-06 12 118105303 118105303 G A KSR2 Missense_Mutation p.H383Y 0.25 tolerated(0.24) possibly_damaging(0.715) TCGA-EE-A2GM-06 12 122018110 122018110 T C KDM2B Intron 0.67 TCGA-EE-A2GM-06 12 123286030 123286030 G A CCDC62 Missense_Mutation p.G446E 0.20 tolerated(1) benign(0) TCGA-EE-A2GM-06 12 123425473 123425473 C T ABCB9 Missense_Mutation p.D484N 0.25 deleterious(0.03) benign(0.429) TCGA-EE-A2GM-06 12 123434428 123434428 G A ABCB9 Missense_Mutation p.L252F 0.30 tolerated(0.11) benign(0.169) TCGA-EE-A2GM-06 12 123494521 123494521 G A PITPNM2 Silent p.S173S 0.35 TCGA-EE-A2GM-06 12 123494522 123494522 G A PITPNM2 Missense_Mutation p.S173F 0.34 deleterious(0.01) possibly_damaging(0.789) TCGA-EE-A2GM-06 12 126004031 126004031 G A TMEM132B Missense_Mutation p.D380N 0.28 tolerated(0.25) possibly_damaging(0.635) TCGA-EE-A2GM-06 12 132529392 132529392 C T EP400 Silent p.L2226L 0.52 TCGA-EE-A2GM-06 12 15091353 15091353 G A ERP27 Silent p.S30S 0.19 TCGA-EE-A2GM-06 12 1893218 1893218 C T ADIPOR2 Silent p.F337F 0.58 TCGA-EE-A2GM-06 12 21661379 21661379 C T GOLT1B Silent p.F60F 0.56 TCGA-EE-A2GM-06 12 21661380 21661380 C T GOLT1B Nonsense_Mutation p.Q61* 0.56 TCGA-EE-A2GM-06 12 24989500 24989500 C T BCAT1 Missense_Mutation p.G295D 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GM-06 12 32945321 32945321 G A PKP2 3'UTR 0.59 TCGA-EE-A2GM-06 12 33030801 33030801 G A PKP2 Missense_Mutation p.T338I 0.29 tolerated(0.08) benign(0.006) TCGA-EE-A2GM-06 12 33529725 33529725 G A SYT10 3'UTR 0.32 TCGA-EE-A2GM-06 12 39752007 39752007 A G KIF21A Silent p.L396L 0.48 TCGA-EE-A2GM-06 12 48919614 48919614 C T OR8S1 Missense_Mutation p.S67F 0.57 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GM-06 12 49952363 49952363 C T MCRS1 3'Flank 0.48 TCGA-EE-A2GM-06 12 51690899 51690899 C T BIN2 Missense_Mutation p.D218N 0.59 deleterious(0.03) possibly_damaging(0.766) TCGA-EE-A2GM-06 12 53011880 53011880 G A KRT73 Silent p.F143F 0.52 TCGA-EE-A2GM-06 12 53045745 53045745 C T KRT2 Missense_Mutation p.R61Q 0.56 deleterious(0.05) unknown(0) TCGA-EE-A2GM-06 12 53237990 53237990 G A KRT78 Nonsense_Mutation p.Q312* 0.29 TCGA-EE-A2GM-06 12 54790037 54790037 G A ITGA5 3'UTR 0.59 TCGA-EE-A2GM-06 12 54798966 54798966 G A ITGA5 Silent p.D403D 0.58 TCGA-EE-A2GM-06 12 56756553 56756553 G A APOF 5'UTR 0.33 TCGA-EE-A2GM-06 12 57430741 57430741 C T MYO1A Nonsense_Mutation p.W730* 0.31 TCGA-EE-A2GM-06 12 57850359 57850359 T A INHBE Missense_Mutation p.W261R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 12 6153593 6153593 G A VWF Missense_Mutation p.P769L 0.26 deleterious(0.02) possibly_damaging(0.676) TCGA-EE-A2GM-06 12 6840169 6840169 C T COPS7A Silent p.L264L 0.28 TCGA-EE-A2GM-06 12 70072605 70072605 G A BEST3 Missense_Mutation p.P184S 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 12 71029639 71029639 G A PTPRB Missense_Mutation p.S88F 0.67 deleterious_low_confidence(0.04) benign(0.023) TCGA-EE-A2GM-06 12 73046194 73046194 C T TRHDE Missense_Mutation p.S878F 0.53 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GM-06 12 7510023 7510023 G A CD163L1 Missense_Mutation p.P1447S 0.27 tolerated(0.38) benign(0.201) TCGA-EE-A2GM-06 12 7966792 7966792 G A SLC2A14 3'UTR 0.33 TCGA-EE-A2GM-06 12 81503406 81503406 G A ACSS3 Missense_Mutation p.D127N 0.20 tolerated(0.16) possibly_damaging(0.872) TCGA-EE-A2GM-06 12 8374792 8374792 C T FAM90A1 Missense_Mutation p.G341R 0.62 tolerated(0.37) possibly_damaging(0.593) TCGA-EE-A2GM-06 12 8689763 8689763 T C CLEC4E Missense_Mutation p.N107S 0.65 tolerated(0.09) benign(0.078) TCGA-EE-A2GM-06 12 91348005 91348005 G A CCER1 Missense_Mutation p.P172L 0.55 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GM-06 12 9304264 9304264 T G PZP Missense_Mutation p.E1406A 0.61 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2GM-06 12 97133771 97133771 G A C12orf55 Missense_Mutation p.D2335N 0.56 tolerated(0.07) benign(0.135) TCGA-EE-A2GM-06 12 99007571 99007571 G A IKBIP Missense_Mutation p.P282L 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 13 23914933 23914933 G A SACS Missense_Mutation p.P1028S 0.48 benign(0) TCGA-EE-A2GM-06 13 24470960 24470960 C T C1QTNF9B Missense_Mutation p.G56R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 13 24890307 24890307 G A C1QTNF9 Missense_Mutation p.G56R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 13 29041080 29041080 C T FLT1 Silent p.K116K 0.49 TCGA-EE-A2GM-06 13 29600240 29600240 G A MTUS2 Missense_Mutation p.V479I 0.40 tolerated(0.14) benign(0.085) TCGA-EE-A2GM-06 13 30097564 30097564 G C SLC7A1 Missense_Mutation p.I296M 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2GM-06 13 32729724 32729724 C T FRY Missense_Mutation p.P526S 0.50 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GM-06 13 32868652 32868652 G C FRY Missense_Mutation p.E2910Q 0.52 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GM-06 13 42265478 42265478 G A VWA8 Silent p.L1282L 0.45 TCGA-EE-A2GM-06 13 47408892 47408892 C T HTR2A 3'UTR 0.64 TCGA-EE-A2GM-06 13 51948811 51948811 G A INTS6 Silent p.N617N 0.45 TCGA-EE-A2GM-06 13 53226986 53226986 C T SUGT1 5'UTR 0.45 TCGA-EE-A2GM-06 13 74420001 74420001 G A KLF12 Silent p.V211V 0.48 TCGA-EE-A2GM-06 14 102894623 102894623 G T TECPR2 Missense_Mutation p.V330L 0.44 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A2GM-06 14 105413617 105413617 C T AHNAK2 Missense_Mutation p.G2724E 0.42 possibly_damaging(0.708) TCGA-EE-A2GM-06 14 107034921 107034921 G A IGHV5-51 Silent p.I53I 0.32 TCGA-EE-A2GM-06 14 19988170 19988170 G A POTEM 3'UTR 0.27 TCGA-EE-A2GM-06 14 20404734 20404734 C T OR4K1 Silent p.N303N 0.13 TCGA-EE-A2GM-06 14 20711780 20711780 C T OR11H4 Missense_Mutation p.P277L 0.40 deleterious(0.04) possibly_damaging(0.72) TCGA-EE-A2GM-06 14 22237214 22237214 G A TRAV6 Silent p.R97R 0.57 TCGA-EE-A2GM-06 14 22251444 22251444 G A TRAV7 Missense_Mutation p.G21R 0.45 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A2GM-06 14 22465888 22465888 C T TRAV17 5'UTR 0.29 TCGA-EE-A2GM-06 14 23346690 23346690 C G LRP10 Missense_Mutation p.P699R 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GM-06 14 23468224 23468224 G A C14orf93 Silent p.F3F 0.39 TCGA-EE-A2GM-06 14 24040602 24040602 T A JPH4 Silent p.V446V 0.48 TCGA-EE-A2GM-06 14 54894385 54894385 G A CNIH1 3'UTR 0.43 TCGA-EE-A2GM-06 14 60063429 60063429 C T RTN1 3'UTR 0.36 TCGA-EE-A2GM-06 14 62187153 62187153 G A HIF1A Missense_Mutation p.R54Q 0.53 deleterious(0) benign(0.238) TCGA-EE-A2GM-06 14 63174914 63174914 G A KCNH5 Missense_Mutation p.P760L 0.53 deleterious(0.04) benign(0.018) TCGA-EE-A2GM-06 14 69522035 69522035 G A DCAF5 Silent p.Y456Y 0.40 TCGA-EE-A2GM-06 14 69522036 69522036 T A DCAF5 Missense_Mutation p.Y456F 0.40 deleterious(0) benign(0.305) TCGA-EE-A2GM-06 14 70634036 70634036 G A SLC8A3 Silent p.I368I 0.45 TCGA-EE-A2GM-06 14 73822358 73822358 G A NUMB Silent p.T34T 0.51 TCGA-EE-A2GM-06 14 74825031 74825031 C T VRTN Silent p.A515A 0.45 TCGA-EE-A2GM-06 14 75265067 75265067 C T YLPM1 Missense_Mutation p.P1023S 0.33 benign(0.143) TCGA-EE-A2GM-06 14 80669282 80669282 C T DIO2 Missense_Mutation p.R227Q 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 14 89068392 89068392 C T ZC3H14 Silent p.S493S 0.44 TCGA-EE-A2GM-06 14 90650484 90650484 G A KCNK13 Missense_Mutation p.G122R 0.46 tolerated(0.06) benign(0.392) TCGA-EE-A2GM-06 14 90650485 90650485 G A KCNK13 Missense_Mutation p.G122E 0.45 tolerated(0.18) benign(0.014) TCGA-EE-A2GM-06 14 90756590 90756590 G A NRDE2 Missense_Mutation p.S735F 0.38 tolerated(0.72) benign(0.03) TCGA-EE-A2GM-06 14 92171001 92171001 C T CATSPERB Missense_Mutation p.E171K 0.36 tolerated(0.38) benign(0.059) TCGA-EE-A2GM-06 14 93760501 93760501 G A BTBD7 Nonsense_Mutation p.R289* 0.38 TCGA-EE-A2GM-06 14 94046595 94046595 G A UNC79 Missense_Mutation p.G668E 0.42 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GM-06 14 94155060 94155060 G A UNC79 Missense_Mutation p.G2182E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 14 94519365 94519365 G A DDX24 Silent p.L763L 0.48 TCGA-EE-A2GM-06 14 95035934 95035934 C T SERPINA4 3'UTR 0.47 TCGA-EE-A2GM-06 14 96800143 96800143 C T ATG2B Silent p.E363E 0.51 TCGA-EE-A2GM-06 15 101042026 101042026 C T CERS3 Nonsense_Mutation p.W10* 0.38 TCGA-EE-A2GM-06 15 101968166 101968166 C T PCSK6 Missense_Mutation p.G251R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 15 102346647 102346647 C T OR4F6 Missense_Mutation p.A242V 0.46 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EE-A2GM-06 15 102358510 102358510 G A OR4F15 Missense_Mutation p.G41R 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GM-06 15 20170023 20170023 G A IGHV1OR15-9 Silent p.F83F 0.44 TCGA-EE-A2GM-06 15 22473063 22473063 C T IGHV4OR15-8 Missense_Mutation p.E70K 0.18 tolerated(0.3) benign(0.009) TCGA-EE-A2GM-06 15 30010270 30010270 G A TJP1 Missense_Mutation p.P1310L 0.39 deleterious_low_confidence(0.02) benign(0.027) TCGA-EE-A2GM-06 15 34640724 34640724 C T NUTM1 Missense_Mutation p.P191S 0.42 tolerated(0.81) benign(0.084) TCGA-EE-A2GM-06 15 34640725 34640725 C T NUTM1 Missense_Mutation p.P191L 0.41 tolerated(0.61) benign(0.03) TCGA-EE-A2GM-06 15 40581116 40581116 G A PLCB2 Nonsense_Mutation p.Q1120* 0.55 TCGA-EE-A2GM-06 15 40581117 40581117 G A PLCB2 Silent p.F1119F 0.55 TCGA-EE-A2GM-06 15 43572069 43572069 C T TGM7 Missense_Mutation p.D478N 0.49 tolerated(0.18) benign(0.367) TCGA-EE-A2GM-06 15 44166049 44166049 C T FRMD5 3'UTR 0.53 TCGA-EE-A2GM-06 15 45409796 45409796 C T DUOXA1 Missense_Mutation p.D457N 0.33 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-EE-A2GM-06 15 65983207 65983207 G A DENND4A Missense_Mutation p.P1241L 0.50 deleterious(0) possibly_damaging(0.855) TCGA-EE-A2GM-06 15 71535119 71535119 C T THSD4 Missense_Mutation p.S199F 0.42 tolerated(0.07) benign(0.007) TCGA-EE-A2GM-06 15 74368303 74368303 G A GOLGA6A Silent p.V196V 0.18 TCGA-EE-A2GM-06 15 74738569 74738569 C T UBL7 Splice_Site p.X336_splice 0.47 TCGA-EE-A2GM-06 15 75782617 75782617 G A PTPN9 Missense_Mutation p.R332C 0.43 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GM-06 15 75782618 75782618 G A PTPN9 Silent p.N331N 0.44 TCGA-EE-A2GM-06 15 79310211 79310211 A G RASGRF1 Silent p.F548F 0.47 TCGA-EE-A2GM-06 15 81172131 81172131 G A KIAA1199 Missense_Mutation p.E106K 0.24 tolerated(0.17) probably_damaging(0.928) TCGA-EE-A2GM-06 15 85401264 85401264 G A ALPK3 Missense_Mutation p.G1301R 0.59 tolerated_low_confidence(0.13) benign(0.018) TCGA-EE-A2GM-06 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.40 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GM-06 15 90189174 90189174 C T KIF7 Silent p.E624E 0.44 TCGA-EE-A2GM-06 15 90903974 90903974 C T ZNF774 Missense_Mutation p.S304L 0.46 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GM-06 15 91527277 91527277 A G PRC1 Missense_Mutation p.C80R 0.47 deleterious(0) possibly_damaging(0.733) TCGA-EE-A2GM-06 15 91769344 91769344 G A SV2B 5'UTR 0.36 TCGA-EE-A2GM-06 16 10273929 10273929 C T GRIN2A Missense_Mutation p.D114N 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 16 10855241 10855241 C T NUBP1 Silent p.V209V 0.30 TCGA-EE-A2GM-06 16 10855242 10855242 C T NUBP1 Missense_Mutation p.R210W 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 16 11272439 11272439 C T CLEC16A Silent p.L1018L 0.41 TCGA-EE-A2GM-06 16 1712548 1712548 A G CRAMP1L Missense_Mutation p.N824S 0.25 tolerated(1) benign(0.001) TCGA-EE-A2GM-06 16 2028701 2028701 C T TBL3 3'UTR 0.40 TCGA-EE-A2GM-06 16 20451668 20451668 G A ACSM5 Silent p.V553V 0.36 TCGA-EE-A2GM-06 16 20565171 20565171 C T ACSM2B Missense_Mutation p.G223E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 16 20871384 20871384 G A DCUN1D3 Missense_Mutation p.L247F 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 16 21031009 21031009 C T DNAH3 Missense_Mutation p.D1987N 0.46 tolerated(0.66) benign(0) TCGA-EE-A2GM-06 16 21133373 21133373 C T DNAH3 Missense_Mutation p.E493K 0.44 tolerated(0.85) benign(0.002) TCGA-EE-A2GM-06 16 21261270 21261270 A G ANKS4B Missense_Mutation p.N128S 0.41 deleterious(0.01) benign(0.15) TCGA-EE-A2GM-06 16 24581176 24581176 T - RBBP6 Frame_Shift_Del p.E1056Nfs*55 0.20 TCGA-EE-A2GM-06 16 2489771 2489771 C T CCNF Missense_Mutation p.L241F 0.45 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2GM-06 16 25232792 25232792 A G AQP8 Missense_Mutation p.N92S 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GM-06 16 2550330 2550330 C T TBC1D24 Missense_Mutation p.P455L 0.38 tolerated(0.21) benign(0.039) TCGA-EE-A2GM-06 16 2550331 2550331 C T TBC1D24 Silent p.P455P 0.39 TCGA-EE-A2GM-06 16 28603668 28603668 C T SULT1A2 Missense_Mutation p.E231K 0.40 tolerated(0.85) benign(0.103) TCGA-EE-A2GM-06 16 2903233 2903233 G A PRSS22 Missense_Mutation p.P272L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 16 30410178 30410178 C T ZNF48 Missense_Mutation p.P536L 0.41 tolerated(0.29) benign(0.002) TCGA-EE-A2GM-06 16 30997507 30997507 C T HSD3B7 Missense_Mutation p.H102Y 0.40 tolerated(1) benign(0.001) TCGA-EE-A2GM-06 16 4787838 4787838 G A C16orf71 Missense_Mutation p.R56Q 0.44 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GM-06 16 50325717 50325717 C T ADCY7 Missense_Mutation p.A149V 0.48 tolerated(0.48) benign(0.002) TCGA-EE-A2GM-06 16 50325718 50325718 C T ADCY7 Silent p.A149A 0.45 TCGA-EE-A2GM-06 16 58074057 58074057 C T MMP15 Missense_Mutation p.P240L 0.47 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 16 68055437 68055437 G A DDX28 3'UTR 0.43 TCGA-EE-A2GM-06 16 68405629 68405629 C T SMPD3 Silent p.K152K 0.45 TCGA-EE-A2GM-06 16 70190538 70190538 C T PDPR Missense_Mutation p.T799I 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GM-06 16 71025992 71025992 C T HYDIN Missense_Mutation p.D1256N 0.23 benign(0.002) TCGA-EE-A2GM-06 16 71423652 71423652 G A CALB2 Missense_Mutation p.E234K 0.40 deleterious(0.02) possibly_damaging(0.647) TCGA-EE-A2GM-06 16 71807177 71807177 C A AP1G1 Missense_Mutation p.A139S 0.42 deleterious(0.04) possibly_damaging(0.67) TCGA-EE-A2GM-06 16 72830885 72830885 C A ZFHX3 Missense_Mutation p.G1899V 0.36 benign(0.299) TCGA-EE-A2GM-06 16 72984558 72984558 A C ZFHX3 Missense_Mutation p.V1009G 0.49 probably_damaging(0.991) TCGA-EE-A2GM-06 16 75263556 75263556 G A BCAR1 Silent p.L868L 0.36 TCGA-EE-A2GM-06 16 81891956 81891956 C T PLCG2 Silent p.I142I 0.37 TCGA-EE-A2GM-06 16 81942191 81942191 C T PLCG2 Silent p.S576S 0.39 TCGA-EE-A2GM-06 16 83998925 83998925 C T OSGIN1 Silent p.F249F 0.43 TCGA-EE-A2GM-06 16 84432141 84432141 G A ATP2C2 Missense_Mutation p.E46K 0.47 deleterious(0.03) benign(0.237) TCGA-EE-A2GM-06 17 10301815 10301815 C T MYH8 Missense_Mutation p.R1375K 0.41 deleterious(0.05) possibly_damaging(0.839) TCGA-EE-A2GM-06 17 10309504 10309504 G A MYH8 Intron 0.43 TCGA-EE-A2GM-06 17 10322026 10322026 C T MYH8 Silent p.K149K 0.42 TCGA-EE-A2GM-06 17 10367812 10367812 C T MYH4 Missense_Mutation p.E209K 0.52 tolerated(0.3) benign(0.028) TCGA-EE-A2GM-06 17 10424534 10424534 G A MYH2 3'UTR 0.45 TCGA-EE-A2GM-06 17 10436681 10436681 C T MYH2 Missense_Mutation p.A788T 0.44 deleterious(0.01) benign(0.062) TCGA-EE-A2GM-06 17 10436682 10436682 C T MYH2 Silent p.L787L 0.45 TCGA-EE-A2GM-06 17 10543484 10543484 G A MYH3 Silent p.I837I 0.50 TCGA-EE-A2GM-06 17 12626229 12626229 G A MYOCD Missense_Mutation p.D107N 0.38 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A2GM-06 17 12656041 12656041 C T MYOCD Missense_Mutation p.S479F 0.43 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GM-06 17 16525965 16525965 G A ZNF624 Silent p.I745I 0.45 TCGA-EE-A2GM-06 17 18183972 18183972 C T TOP3A Silent p.G674G 0.34 TCGA-EE-A2GM-06 17 18183973 18183973 C T TOP3A Splice_Site p.X674_splice 0.34 TCGA-EE-A2GM-06 17 21319624 21319624 G A KCNJ12 Missense_Mutation p.G324S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 17 26947001 26947001 G A KIAA0100 Silent p.F1799F 0.48 TCGA-EE-A2GM-06 17 29662004 29662004 G A NF1 Silent p.Q1987Q 0.46 TCGA-EE-A2GM-06 17 3195661 3195661 C T OR3A1 Silent p.L72L 0.37 TCGA-EE-A2GM-06 17 37565510 37565510 T G MED1 Missense_Mutation p.L988F 0.40 tolerated_low_confidence(0.39) benign(0.186) TCGA-EE-A2GM-06 17 37872083 37872083 C T ERBB2 Silent p.I468I 0.44 TCGA-EE-A2GM-06 17 38026953 38026953 T G ZPBP2 Missense_Mutation p.I42R 0.51 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2GM-06 17 38028656 38028656 C T ZPBP2 Silent p.C180C 0.42 TCGA-EE-A2GM-06 17 39036136 39036136 C T KRT20 Missense_Mutation p.E283K 0.52 tolerated(1) benign(0.046) TCGA-EE-A2GM-06 17 39642730 39642730 G A KRT36 Silent p.T434T 0.32 TCGA-EE-A2GM-06 17 39725704 39725704 C T KRT9 Missense_Mutation p.D340N 0.38 deleterious(0) benign(0.223) TCGA-EE-A2GM-06 17 40255626 40255626 G A DHX58 Missense_Mutation p.S585L 0.36 deleterious(0.04) benign(0.031) TCGA-EE-A2GM-06 17 4060188 4060188 G A CYB5D2 Missense_Mutation p.V203I 0.12 deleterious(0.01) possibly_damaging(0.838) TCGA-EE-A2GM-06 17 43535717 43535717 G A PLEKHM1 Missense_Mutation p.S466F 0.35 tolerated(0.09) benign(0.219) TCGA-EE-A2GM-06 17 46259780 46259780 C T SKAP1 Missense_Mutation p.D203N 0.40 tolerated(0.05) benign(0.22) TCGA-EE-A2GM-06 17 4789259 4789259 C T MINK1 Silent p.P231P 0.32 TCGA-EE-A2GM-06 17 48551615 48551615 C T ACSF2 Missense_Mutation p.T595I 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 17 48631613 48631613 C T SPATA20 Silent p.D653D 0.21 TCGA-EE-A2GM-06 17 53471727 53471727 G A MMD Nonsense_Mutation p.R229* 0.45 TCGA-EE-A2GM-06 17 5424849 5424849 G A NLRP1 Missense_Mutation p.R1260W 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 17 54428271 54428271 C T ANKFN1 Silent p.F114F 0.40 TCGA-EE-A2GM-06 17 56233249 56233249 C T OR4D1 Silent p.I245I 0.48 TCGA-EE-A2GM-06 17 56399757 56399757 G A BZRAP1 Missense_Mutation p.A445V 0.47 deleterious(0.01) possibly_damaging(0.616) TCGA-EE-A2GM-06 17 58531839 58531839 C T APPBP2 Missense_Mutation p.E388K 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GM-06 17 58531840 58531840 C T APPBP2 Silent p.E387E 0.49 TCGA-EE-A2GM-06 17 60351437 60351437 C T TBC1D3P2 RNA 0.41 TCGA-EE-A2GM-06 17 60484033 60484033 G A EFCAB3 Silent p.K279K 0.59 TCGA-EE-A2GM-06 17 6674014 6674014 C T XAF1 Missense_Mutation p.P187L 0.34 deleterious(0.05) benign(0.063) TCGA-EE-A2GM-06 17 6941640 6941640 C T SLC16A13 Silent p.S171S 0.63 TCGA-EE-A2GM-06 17 72246427 72246427 C T TTYH2 Silent p.L349L 0.53 TCGA-EE-A2GM-06 17 72540764 72540764 C T CD300C Silent p.E128E 0.36 TCGA-EE-A2GM-06 17 73016679 73016679 C T ICT1 Nonsense_Mutation p.R155* 0.43 TCGA-EE-A2GM-06 17 7358731 7358731 C T CHRNB1 Silent p.F391F 0.38 TCGA-EE-A2GM-06 17 73738433 73738433 C T ITGB4 Missense_Mutation p.T882I 0.47 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2GM-06 17 74001528 74001528 C T CDK3 3'UTR 0.45 TCGA-EE-A2GM-06 17 75139696 75139696 G A SEC14L1 Silent p.Q6Q 0.53 TCGA-EE-A2GM-06 17 76133842 76133842 C T TMC8 Silent p.I432I 0.36 TCGA-EE-A2GM-06 17 78055760 78055760 C T CCDC40 Missense_Mutation p.A631V 0.42 tolerated(0.06) benign(0.01) TCGA-EE-A2GM-06 17 7849121 7849121 C T CNTROB Missense_Mutation p.P604S 0.41 deleterious(0.03) benign(0.392) TCGA-EE-A2GM-06 17 78867658 78867658 C T RPTOR Silent p.S798S 0.39 TCGA-EE-A2GM-06 17 79517371 79517371 G A C17orf70 Silent p.P383P 0.47 TCGA-EE-A2GM-06 17 8051093 8051093 G A PER1 Silent p.A429A 0.47 TCGA-EE-A2GM-06 17 9804366 9804366 C T RCVRN Missense_Mutation p.E145K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 18 13056677 13056677 C T CEP192 Missense_Mutation p.S1363L 0.45 tolerated(0.23) benign(0.275) TCGA-EE-A2GM-06 18 13645318 13645318 G A LDLRAD4 Missense_Mutation p.E195K 0.43 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GM-06 18 19996939 19996939 G A CTAGE1 Missense_Mutation p.P279L 0.48 deleterious(0.04) benign(0.03) TCGA-EE-A2GM-06 18 2931297 2931297 G A LPIN2 Silent p.L471L 0.18 TCGA-EE-A2GM-06 18 29795083 29795083 G A MEP1B Missense_Mutation p.G540R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 18 34839114 34839114 C T CELF4 Intron 0.58 TCGA-EE-A2GM-06 18 40500702 40500702 C T RIT2 Intron 0.72 TCGA-EE-A2GM-06 18 40853601 40853601 C T SYT4 Missense_Mutation p.E265K 0.38 deleterious(0) benign(0.091) TCGA-EE-A2GM-06 18 50592482 50592482 G A DCC Missense_Mutation p.E403K 0.50 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2GM-06 18 56587507 56587507 C T ZNF532 Missense_Mutation p.S663F 0.43 deleterious(0) benign(0.167) TCGA-EE-A2GM-06 18 59221637 59221637 C T CDH20 Silent p.I705I 0.46 TCGA-EE-A2GM-06 18 61449597 61449597 C T SERPINB7 5'UTR 0.44 TCGA-EE-A2GM-06 18 61449598 61449598 C T SERPINB7 5'UTR 0.44 TCGA-EE-A2GM-06 18 61570183 61570183 G A SERPINB2 Missense_Mutation p.D298N 0.55 deleterious(0.01) possibly_damaging(0.696) TCGA-EE-A2GM-06 18 70461424 70461424 C T NETO1 Missense_Mutation p.M189I 0.38 tolerated(0.33) benign(0) TCGA-EE-A2GM-06 18 72228144 72228144 G A CNDP1 Silent p.G119G 0.49 TCGA-EE-A2GM-06 18 77733639 77733639 T A TXNL4A 3'UTR 0.39 TCGA-EE-A2GM-06 18 9516990 9516990 C T RALBP1 Missense_Mutation p.P131L 0.54 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GM-06 19 11224036 11224036 C T LDLR Silent p.I423I 0.35 TCGA-EE-A2GM-06 19 12430398 12430398 C T ZNF563 Silent p.G147G 0.46 TCGA-EE-A2GM-06 19 12878890 12878890 C T HOOK2 Silent p.E384E 0.37 TCGA-EE-A2GM-06 19 13346508 13346508 G A CACNA1A Nonsense_Mutation p.R1663* 0.29 TCGA-EE-A2GM-06 19 13346509 13346509 G A CACNA1A Silent p.F1662F 0.29 TCGA-EE-A2GM-06 19 13988320 13988320 C T NANOS3 Silent p.S86S 0.37 TCGA-EE-A2GM-06 19 15752371 15752371 G A CYP4F3 Missense_Mutation p.R49Q 0.50 tolerated(0.36) benign(0.006) TCGA-EE-A2GM-06 19 15838868 15838868 C T OR10H2 Silent p.N5N 0.34 TCGA-EE-A2GM-06 19 15918416 15918416 C T OR10H1 Silent p.L144L 0.39 TCGA-EE-A2GM-06 19 16899851 16899851 G A NWD1 Silent p.K930K 0.37 TCGA-EE-A2GM-06 19 17927816 17927816 G A INSL3 Missense_Mutation p.P113L 0.59 tolerated_low_confidence(0.29) benign(0) TCGA-EE-A2GM-06 19 17927817 17927817 G A INSL3 Missense_Mutation p.P113S 0.62 tolerated_low_confidence(0.12) benign(0.014) TCGA-EE-A2GM-06 19 1817251 1817251 G A REXO1 Silent p.T1056T 0.20 TCGA-EE-A2GM-06 19 1821539 1821539 G A REXO1 Silent p.I791I 0.44 TCGA-EE-A2GM-06 19 19339214 19339214 C T NCAN Missense_Mutation p.P929S 0.41 tolerated(0.08) benign(0.07) TCGA-EE-A2GM-06 19 21607543 21607543 C T ZNF493 Silent p.F694F 0.50 TCGA-EE-A2GM-06 19 22363533 22363533 C T ZNF676 Missense_Mutation p.R329K 0.24 tolerated(0.36) benign(0.001) TCGA-EE-A2GM-06 19 2338837 2338837 C T SPPL2B RNA 0.47 TCGA-EE-A2GM-06 19 3118923 3118923 A T GNA11 Missense_Mutation p.M203L 0.42 tolerated(0.18) benign(0.266) TCGA-EE-A2GM-06 19 35258311 35258311 G A ZNF599 Missense_Mutation p.P51S 0.63 tolerated(0.07) benign(0.154) TCGA-EE-A2GM-06 19 35502383 35502383 C T GRAMD1A Silent p.F177F 0.29 TCGA-EE-A2GM-06 19 35836598 35836598 C T CD22 Missense_Mutation p.P768S 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 19 3589500 3589500 G A GIPC3 Missense_Mutation p.G218R 0.49 deleterious(0.02) probably_damaging(0.96) TCGA-EE-A2GM-06 19 35941572 35941572 G A FFAR2 Missense_Mutation p.G319E 0.29 tolerated(0.67) benign(0.035) TCGA-EE-A2GM-06 19 36050083 36050083 G A ATP4A Missense_Mutation p.S356F 0.34 deleterious(0) probably_damaging(0.945) TCGA-EE-A2GM-06 19 36574029 36574029 C T WDR62 Missense_Mutation p.P479L 0.20 deleterious(0.01) possibly_damaging(0.55) TCGA-EE-A2GM-06 19 3738586 3738586 G A TJP3 Missense_Mutation p.E449K 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 19 38995400 38995400 G A RYR1 Missense_Mutation p.E2694K 0.28 benign(0.032) TCGA-EE-A2GM-06 19 39104893 39104893 C T MAP4K1 Missense_Mutation p.D137N 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 19 39104894 39104894 C T MAP4K1 Silent p.R136R 0.28 TCGA-EE-A2GM-06 19 40408800 40408800 T A FCGBP Missense_Mutation p.I1347F 0.67 probably_damaging(0.982) TCGA-EE-A2GM-06 19 40902512 40902512 G A PRX Missense_Mutation p.P583S 0.23 tolerated(0.15) possibly_damaging(0.803) TCGA-EE-A2GM-06 19 40902513 40902513 G A PRX Silent p.V582V 0.24 TCGA-EE-A2GM-06 19 41350640 41350640 C T CYP2A6 Missense_Mutation p.R400K 0.35 benign(0.007) TCGA-EE-A2GM-06 19 41388051 41388051 G A CYP2A7 Missense_Mutation p.S22F 0.56 tolerated(0.17) probably_damaging(0.999) TCGA-EE-A2GM-06 19 41430263 41430263 C T CYP2B7P RNA 0.60 TCGA-EE-A2GM-06 19 42482370 42482370 G A ATP1A3 Missense_Mutation p.S593F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 19 42485871 42485871 C T ATP1A3 Intron 0.36 TCGA-EE-A2GM-06 19 42621469 42621469 G A POU2F2 Missense_Mutation p.P79L 0.32 deleterious(0.01) benign(0.074) TCGA-EE-A2GM-06 19 42854467 42854467 C T MEGF8 Silent p.S822S 0.51 TCGA-EE-A2GM-06 19 4325533 4325533 G A STAP2 Missense_Mutation p.P280L 0.44 tolerated(0.23) benign(0.013) TCGA-EE-A2GM-06 19 43411267 43411267 G A PSG6 Silent p.L349L 0.56 TCGA-EE-A2GM-06 19 43519497 43519497 G A PSG11 Silent p.F245F 0.54 TCGA-EE-A2GM-06 19 4409289 4409289 C T CHAF1A Nonsense_Mutation p.Q165* 0.36 TCGA-EE-A2GM-06 19 4511782 4511782 C T PLIN4 Silent p.K716K 0.16 TCGA-EE-A2GM-06 19 45211155 45211155 C T CEACAM16 Silent p.I321I 0.28 TCGA-EE-A2GM-06 19 45575443 45575443 G A ZNF296 Missense_Mutation p.R282W 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GM-06 19 46308114 46308114 C T RSPH6A Missense_Mutation p.G350E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 19 46663936 46663936 C G IGFL2 Missense_Mutation p.P58A 0.52 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GM-06 19 46733392 46733392 G A IGFL1 Missense_Mutation p.R18K 0.27 tolerated(0.95) benign(0.046) TCGA-EE-A2GM-06 19 49113145 49113145 G A FAM83E Missense_Mutation p.S249L 0.83 deleterious(0.01) possibly_damaging(0.696) TCGA-EE-A2GM-06 19 49119189 49119189 G A RPL18 Nonsense_Mutation p.R146* 0.44 TCGA-EE-A2GM-06 19 49167017 49167017 C A NTN5 Splice_Site p.X342_splice 0.29 TCGA-EE-A2GM-06 19 49686035 49686035 C T TRPM4 Silent p.A488A 0.39 TCGA-EE-A2GM-06 19 51363301 51363301 C T KLK3 Missense_Mutation p.A235V 0.28 deleterious(0.04) benign(0.033) TCGA-EE-A2GM-06 19 52856990 52856990 C T ZNF610 Missense_Mutation p.S40F 0.22 tolerated(0.11) benign(0.006) TCGA-EE-A2GM-06 19 53014519 53014519 C T ZNF578 Silent p.S295S 0.23 TCGA-EE-A2GM-06 19 53453605 53453605 G A ZNF816 Missense_Mutation p.H475Y 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GM-06 19 54219855 54219855 C T MIR521-2 RNA 0.24 TCGA-EE-A2GM-06 19 54968019 54968019 C T LENG8 Silent p.I550I 0.61 TCGA-EE-A2GM-06 19 55045128 55045128 C T KIR3DX1 Missense_Mutation p.P83L 0.21 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2GM-06 19 55333022 55333022 C T KIR3DL1 Missense_Mutation p.P220S 0.65 tolerated(0.11) benign(0) TCGA-EE-A2GM-06 19 55418119 55418119 G C NCR1 Silent p.G103G 0.59 TCGA-EE-A2GM-06 19 55451766 55451766 C T NLRP7 Missense_Mutation p.G141R 0.52 tolerated(0.11) benign(0.274) TCGA-EE-A2GM-06 19 56160619 56160619 C T CCDC106 Missense_Mutation p.P27L 0.48 tolerated_low_confidence(0.68) benign(0.004) TCGA-EE-A2GM-06 19 56171554 56171554 C T U2AF2 Missense_Mutation p.T66I 0.20 tolerated(0.18) benign(0.01) TCGA-EE-A2GM-06 19 57066540 57066540 C T ZFP28 Nonsense_Mutation p.Q796* 0.50 TCGA-EE-A2GM-06 19 57327855 57327855 C T PEG3 Missense_Mutation p.G652E 0.62 tolerated(0.13) benign(0.299) TCGA-EE-A2GM-06 19 58102591 58102591 C T ZIK1 Missense_Mutation p.S471F 0.50 tolerated(0.1) possibly_damaging(0.895) TCGA-EE-A2GM-06 19 7543203 7543203 G A PEX11G Missense_Mutation p.T163I 0.14 tolerated(0.13) benign(0.024) TCGA-EE-A2GM-06 19 8434162 8434162 G A ANGPTL4 Missense_Mutation p.E203K 0.38 tolerated(0.5) benign(0.253) TCGA-EE-A2GM-06 19 9074964 9074964 G A MUC16 Missense_Mutation p.S4161F 0.25 unknown(0) TCGA-EE-A2GM-06 19 9077248 9077248 G A MUC16 Missense_Mutation p.P3400S 0.39 unknown(0) TCGA-EE-A2GM-06 1 104115688 104115688 C T AMY2B Missense_Mutation p.R107C 0.44 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GM-06 1 109780523 109780523 C T SARS 3'UTR 0.22 TCGA-EE-A2GM-06 1 109801229 109801229 C T CELSR2 Silent p.D1162D 0.37 TCGA-EE-A2GM-06 1 110581845 110581845 C T STRIP1 Missense_Mutation p.A126V 0.54 tolerated(1) benign(0.022) TCGA-EE-A2GM-06 1 110581846 110581846 C T STRIP1 Silent p.A126A 0.56 TCGA-EE-A2GM-06 1 111825924 111825924 C T CHIAP2 RNA 0.69 TCGA-EE-A2GM-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.63 tolerated(0.06) benign(0.006) TCGA-EE-A2GM-06 1 11561952 11561952 C T PTCHD2 Silent p.I301I 0.21 TCGA-EE-A2GM-06 1 11590963 11590963 G A PTCHD2 Splice_Site p.X1035_splice 0.60 TCGA-EE-A2GM-06 1 116932209 116932209 C T ATP1A1 Silent p.F301F 0.58 TCGA-EE-A2GM-06 1 117311301 117311301 A T CD2 Missense_Mutation p.T318S 0.21 deleterious(0.02) possibly_damaging(0.754) TCGA-EE-A2GM-06 1 118166492 118166492 C T FAM46C Silent p.S334S 0.28 TCGA-EE-A2GM-06 1 118535252 118535252 G A SPAG17 Missense_Mutation p.P1733L 0.54 deleterious(0) possibly_damaging(0.643) TCGA-EE-A2GM-06 1 120311394 120311394 G A HMGCS2 Missense_Mutation p.P25L 0.58 tolerated_low_confidence(0.34) benign(0.005) TCGA-EE-A2GM-06 1 144892406 144892406 C T PDE4DIP Intron 0.25 TCGA-EE-A2GM-06 1 145109572 145109572 C T SEC22B RNA 0.10 TCGA-EE-A2GM-06 1 145533487 145533487 G A ITGA10 Missense_Mutation p.R457Q 0.50 tolerated(0.24) possibly_damaging(0.734) TCGA-EE-A2GM-06 1 147084686 147084686 C T BCL9 Missense_Mutation p.P20S 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GM-06 1 150769331 150769331 G A CTSK Nonsense_Mutation p.R312* 0.37 TCGA-EE-A2GM-06 1 151734008 151734008 G A MRPL9 Silent p.S169S 0.41 TCGA-EE-A2GM-06 1 151992754 151992754 G A NBPF18P RNA 0.17 TCGA-EE-A2GM-06 1 152329899 152329907 ATCCTCTTC - FLG2 In_Frame_Del p.E119_D121del 0.24 TCGA-EE-A2GM-06 1 152552228 152552228 C T LCE3D Missense_Mutation p.R62Q 0.33 tolerated_low_confidence(0.22) unknown(0) TCGA-EE-A2GM-06 1 153656275 153656275 C T NPR1 Silent p.L487L 0.15 TCGA-EE-A2GM-06 1 154067456 154067456 C T NUP210L Silent p.Q714Q 0.62 TCGA-EE-A2GM-06 1 155003688 155003688 G A DCST2 Silent p.I254I 0.29 TCGA-EE-A2GM-06 1 156812213 156812213 G A INSRR Nonsense_Mutation p.R1072* 0.26 TCGA-EE-A2GM-06 1 156874559 156874559 G A PEAR1 Missense_Mutation p.E41K 0.36 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GM-06 1 156930235 156930235 G A ARHGEF11 Silent p.I419I 0.41 TCGA-EE-A2GM-06 1 157490932 157490932 G A FCRL5 Missense_Mutation p.S797L 0.39 tolerated(0.09) possibly_damaging(0.532) TCGA-EE-A2GM-06 1 157517185 157517185 A T FCRL5 Intron 0.54 TCGA-EE-A2GM-06 1 15771107 15771107 G A CTRC Missense_Mutation p.G167D 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GM-06 1 157771924 157771924 C T FCRL1 Missense_Mutation p.D223N 0.32 deleterious(0.04) possibly_damaging(0.687) TCGA-EE-A2GM-06 1 158299694 158299694 G A CD1B Silent p.P185P 0.20 TCGA-EE-A2GM-06 1 158436035 158436035 C T OR10K1 Silent p.I228I 0.39 TCGA-EE-A2GM-06 1 158517794 158517794 G A OR6Y1 Silent p.S34S 0.27 TCGA-EE-A2GM-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.37 deleterious(0.05) benign(0.008) TCGA-EE-A2GM-06 1 158637652 158637652 C T SPTA1 Silent p.Q678Q 0.29 TCGA-EE-A2GM-06 1 159409847 159409847 G A OR10J1 Missense_Mutation p.S100N 0.57 tolerated(0.8) benign(0.02) TCGA-EE-A2GM-06 1 159410103 159410103 C T OR10J1 Silent p.P185P 0.30 TCGA-EE-A2GM-06 1 159410104 159410104 C T OR10J1 Missense_Mutation p.H186Y 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2GM-06 1 160125918 160125918 C T ATP1A4 Silent p.I165I 0.26 TCGA-EE-A2GM-06 1 160808741 160808741 C T CD244 Missense_Mutation p.E257K 0.30 tolerated(0.58) benign(0) TCGA-EE-A2GM-06 1 161681126 161681126 C T FCRLA Missense_Mutation p.P144S 0.11 tolerated(0.43) possibly_damaging(0.718) TCGA-EE-A2GM-06 1 162324976 162324976 G A NOS1AP Splice_Site p.X199_splice 0.37 TCGA-EE-A2GM-06 1 16259334 16259334 C T SPEN Missense_Mutation p.P2200L 0.64 benign(0.005) TCGA-EE-A2GM-06 1 165678643 165678643 C T RP11-466F5.10 5'Flank 0.20 TCGA-EE-A2GM-06 1 167095156 167095156 C T DUSP27 Missense_Mutation p.P263L 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 1 169351425 169351425 C T BLZF1 Missense_Mutation p.S308F 0.37 tolerated(0.11) benign(0.025) TCGA-EE-A2GM-06 1 169391179 169391179 G A CCDC181 Missense_Mutation p.P164S 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GM-06 1 169857932 169857932 G A SCYL3 Missense_Mutation p.P17L 0.36 tolerated(0.39) benign(0.011) TCGA-EE-A2GM-06 1 171958197 171958197 G A DNM3 Silent p.R166R 0.33 TCGA-EE-A2GM-06 1 173953695 173953695 T G RC3H1 Missense_Mutation p.E98D 0.37 tolerated(0.54) possibly_damaging(0.742) TCGA-EE-A2GM-06 1 175046761 175046761 G A TNN Silent p.G69G 0.13 TCGA-EE-A2GM-06 1 175092600 175092600 G A TNN Nonsense_Mutation p.W905* 0.32 TCGA-EE-A2GM-06 1 175355430 175355430 G A TNR Silent p.D505D 0.27 TCGA-EE-A2GM-06 1 177250226 177250226 C T BRINP2 Silent p.F638F 0.33 TCGA-EE-A2GM-06 1 181745324 181745324 G A CACNA1E Missense_Mutation p.E1743K 0.34 deleterious(0) benign(0.305) TCGA-EE-A2GM-06 1 182571108 182571108 G A RGS16 Missense_Mutation p.P127L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 1 183201804 183201804 G A LAMC2 Missense_Mutation p.G678S 0.40 tolerated(0.71) benign(0.001) TCGA-EE-A2GM-06 1 183201805 183201805 G A LAMC2 Missense_Mutation p.G678D 0.41 tolerated(0.6) benign(0.028) TCGA-EE-A2GM-06 1 183502377 183502377 C T SMG7 Missense_Mutation p.L308F 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GM-06 1 185956651 185956651 C T HMCN1 Missense_Mutation p.P1008L 0.29 probably_damaging(0.999) TCGA-EE-A2GM-06 1 186266058 186266058 C T PRG4 Silent p.F17F 0.23 TCGA-EE-A2GM-06 1 19446738 19446738 G A UBR4 Silent p.L3416L 0.30 TCGA-EE-A2GM-06 1 201013550 201013550 G A CACNA1S Missense_Mutation p.P1568L 0.53 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2GM-06 1 201980221 201980221 C T ELF3 5'UTR 0.18 TCGA-EE-A2GM-06 1 20417277 20417277 C T PLA2G5 3'UTR 0.47 TCGA-EE-A2GM-06 1 204937416 204937416 C T NFASC Missense_Mutation p.P249L 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 1 205027716 205027716 G A CNTN2 Missense_Mutation p.E138K 0.13 tolerated(0.08) benign(0.105) TCGA-EE-A2GM-06 1 206224416 206224416 C T AVPR1B 5'UTR 0.51 TCGA-EE-A2GM-06 1 207305077 207305077 G A C4BPA Missense_Mutation p.G359E 0.13 tolerated(0.39) possibly_damaging(0.46) TCGA-EE-A2GM-06 1 209605542 209605542 C T MIR205HG Intron 0.21 TCGA-EE-A2GM-06 1 209880344 209880344 C T HSD11B1 Missense_Mutation p.H130Y 0.52 deleterious(0.01) benign(0.001) TCGA-EE-A2GM-06 1 214491427 214491427 C T SMYD2 Silent p.I118I 0.49 TCGA-EE-A2GM-06 1 216017817 216017817 G A USH2A Missense_Mutation p.P3026L 0.16 probably_damaging(0.915) TCGA-EE-A2GM-06 1 216246510 216246510 C T USH2A Missense_Mutation p.G1902E 0.19 benign(0.272) TCGA-EE-A2GM-06 1 228288806 228288806 C G C1orf35 3'UTR 0.52 TCGA-EE-A2GM-06 1 233134871 233134871 C T PCNXL2 Nonsense_Mutation p.W1861* 0.54 TCGA-EE-A2GM-06 1 233515348 233515348 C A MLK4 Missense_Mutation p.P866T 0.22 deleterious(0.02) benign(0.007) TCGA-EE-A2GM-06 1 233515349 233515349 C T MLK4 Missense_Mutation p.P866L 0.22 deleterious(0.03) benign(0.085) TCGA-EE-A2GM-06 1 23519780 23519780 G A HTR1D Silent p.I311I 0.56 TCGA-EE-A2GM-06 1 23763958 23763958 C T ASAP3 Silent p.R370R 0.55 TCGA-EE-A2GM-06 1 240071510 240071510 G A CHRM3 Silent p.R253R 0.16 TCGA-EE-A2GM-06 1 240071705 240071705 G A CHRM3 Silent p.K318K 0.15 TCGA-EE-A2GM-06 1 247587759 247587759 G A NLRP3 Silent p.K338K 0.12 TCGA-EE-A2GM-06 1 247752549 247752549 G A OR2G2 Silent p.R296R 0.27 TCGA-EE-A2GM-06 1 248084811 248084811 C T OR2T8 Silent p.F164F 0.15 TCGA-EE-A2GM-06 1 248224365 248224365 C T OR2L3 Missense_Mutation p.P128S 0.57 deleterious(0.01) possibly_damaging(0.553) TCGA-EE-A2GM-06 1 248308485 248308485 C T OR2M5 Silent p.F12F 0.13 TCGA-EE-A2GM-06 1 248551397 248551397 C T OR2T6 Missense_Mutation p.T163I 0.44 deleterious(0.03) benign(0.344) TCGA-EE-A2GM-06 1 248570395 248570395 G A OR2T1 Missense_Mutation p.G367D 0.18 tolerated_low_confidence(0.65) benign(0) TCGA-EE-A2GM-06 1 248651910 248651910 G A OR2T5 Missense_Mutation p.M7I 0.41 tolerated(0.09) benign(0.002) TCGA-EE-A2GM-06 1 248685728 248685728 C T OR2G6 Nonsense_Mutation p.Q261* 0.17 TCGA-EE-A2GM-06 1 248845270 248845270 G A OR14I1 Silent p.F112F 0.18 TCGA-EE-A2GM-06 1 24978983 24978983 G A SRRM1 Missense_Mutation p.E262K 0.65 unknown(0) TCGA-EE-A2GM-06 1 27121283 27121283 C T PIGV Missense_Mutation p.A253V 0.48 tolerated(0.38) benign(0.012) TCGA-EE-A2GM-06 1 27121647 27121647 C A PIGV Missense_Mutation p.F374L 0.59 deleterious(0.02) possibly_damaging(0.819) TCGA-EE-A2GM-06 1 27676853 27676853 C T SYTL1 Intron 0.27 TCGA-EE-A2GM-06 1 29189627 29189627 C T OPRD1 Silent p.L317L 0.32 TCGA-EE-A2GM-06 1 32159756 32159757 - TG COL16A1 Frame_Shift_Ins p.S333Hfs*129 0.36 TCGA-EE-A2GM-06 1 3394502 3394502 G A ARHGEF16 Missense_Mutation p.E513K 0.60 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A2GM-06 1 34191035 34191035 G A CSMD2 Silent p.F830F 0.54 TCGA-EE-A2GM-06 1 35452993 35452993 G A ZMYM6 Silent p.F1230F 0.34 TCGA-EE-A2GM-06 1 38079494 38079494 C T RSPO1 Silent p.R169R 0.21 TCGA-EE-A2GM-06 1 38079495 38079495 C T RSPO1 Missense_Mutation p.R169Q 0.20 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A2GM-06 1 38455678 38455678 G A SF3A3 5'UTR 0.24 TCGA-EE-A2GM-06 1 40323052 40323052 G A TRIT1 Missense_Mutation p.S71F 0.37 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2GM-06 1 40928286 40928286 C T ZFP69B Silent p.P210P 0.31 TCGA-EE-A2GM-06 1 41300638 41300638 G A KCNQ4 Splice_Site p.X538_splice 0.57 TCGA-EE-A2GM-06 1 44083153 44083153 C T PTPRF Missense_Mutation p.S1370L 0.31 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2GM-06 1 46810471 46810471 A T NSUN4 Splice_Site p.X32_splice 0.56 TCGA-EE-A2GM-06 1 47279639 47279639 C T CYP4B1 Missense_Mutation p.L227F 0.27 tolerated(0.36) benign(0.413) TCGA-EE-A2GM-06 1 55136510 55136510 G A MROH7 Missense_Mutation p.E503K 0.29 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2GM-06 1 55207218 55207218 C T TTC4 3'UTR 0.50 TCGA-EE-A2GM-06 1 6188564 6188564 G A CHD5 Missense_Mutation p.P1242L 0.69 tolerated_low_confidence(0.2) benign(0.002) TCGA-EE-A2GM-06 1 6188565 6188565 G A CHD5 Missense_Mutation p.P1242S 0.69 tolerated_low_confidence(0.19) benign(0.013) TCGA-EE-A2GM-06 1 6522207 6522207 C T TNFRSF25 Missense_Mutation p.A267T 0.49 tolerated(0.69) benign(0.013) TCGA-EE-A2GM-06 1 65871733 65871733 C T DNAJC6 Missense_Mutation p.P803L 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GM-06 1 67724795 67724795 C T IL23R Missense_Mutation p.S625L 0.47 tolerated(0.1) possibly_damaging(0.765) TCGA-EE-A2GM-06 1 75039159 75039159 G A C1orf173 Silent p.F745F 0.57 TCGA-EE-A2GM-06 1 76190487 76190487 C T ACADM Silent p.F5F 0.56 TCGA-EE-A2GM-06 1 94057828 94057828 G A BCAR3 Silent p.P160P 0.62 TCGA-EE-A2GM-06 1 99767390 99767390 T A LPPR4 Nonsense_Mutation p.Y301* 0.60 TCGA-EE-A2GM-06 20 10023803 10023803 G A ANKEF1 Missense_Mutation p.R127Q 0.47 deleterious(0.01) possibly_damaging(0.463) TCGA-EE-A2GM-06 20 1538283 1538283 G A RP4-576H24.4 Intron 0.35 TCGA-EE-A2GM-06 20 19677461 19677461 C T SLC24A3 Silent p.T504T 0.32 TCGA-EE-A2GM-06 20 2618212 2618212 C T TMC2 Silent p.A826A 0.29 TCGA-EE-A2GM-06 20 30496420 30496420 G T TTLL9 Missense_Mutation p.C78F 0.27 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GM-06 20 30733135 30733135 C T TM9SF4 Silent p.A264A 0.47 TCGA-EE-A2GM-06 20 3171367 3171367 C T DDRGK1 Missense_Mutation p.E293K 0.41 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GM-06 20 34025721 34025721 C T GDF5 5'UTR 0.46 TCGA-EE-A2GM-06 20 40713470 40713470 G A PTPRT Missense_Mutation p.R1330C 0.37 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A2GM-06 20 40770601 40770601 C T PTPRT Silent p.K908K 0.42 TCGA-EE-A2GM-06 20 42213656 42213656 G A SGK2 Silent p.%3D 0.34 TCGA-EE-A2GM-06 20 43132535 43132535 G A SERINC3 Missense_Mutation p.P326S 0.51 tolerated(0.21) benign(0.016) TCGA-EE-A2GM-06 20 43933105 43933105 C T MATN4 Missense_Mutation p.E136K 0.53 benign(0.004) TCGA-EE-A2GM-06 20 45947811 45947811 G A AL031666.2 Silent p.G149G 0.31 TCGA-EE-A2GM-06 20 49197860 49197860 C T PTPN1 Nonsense_Mutation p.Q383* 0.32 TCGA-EE-A2GM-06 20 55012399 55012399 G A CASS4 Silent p.T72T 0.54 TCGA-EE-A2GM-06 20 55108414 55108414 C T FAM209B Missense_Mutation p.S6L 0.40 tolerated(0.32) benign(0.018) TCGA-EE-A2GM-06 20 60448842 60448842 G A CDH4 Silent p.G312G 0.43 TCGA-EE-A2GM-06 20 60881373 60881373 G A ADRM1 Missense_Mutation p.G151S 0.48 tolerated(0.19) benign(0.077) TCGA-EE-A2GM-06 20 62038717 62038717 C T KCNQ2 Missense_Mutation p.M633I 0.39 tolerated(0.65) probably_damaging(0.998) TCGA-EE-A2GM-06 20 8678311 8678311 C T PLCB1 Missense_Mutation p.R350C 0.17 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GM-06 20 8689366 8689366 C T PLCB1 Missense_Mutation p.P406L 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GM-06 20 9459617 9459617 G A PLCB4 Silent p.Q1182Q 0.41 TCGA-EE-A2GM-06 21 10862764 10862764 G A IGHV1OR21-1 Silent p.Q20Q 0.18 TCGA-EE-A2GM-06 21 10998223 10998223 C T TPTE RNA 0.17 TCGA-EE-A2GM-06 21 10998224 10998224 C T TPTE RNA 0.19 TCGA-EE-A2GM-06 21 11039097 11039097 C T BAGE2 RNA 0.06 TCGA-EE-A2GM-06 21 27078381 27078381 G A JAM2 Missense_Mutation p.R263K 0.42 tolerated(0.33) benign(0.075) TCGA-EE-A2GM-06 21 37408409 37408409 G A SETD4 3'UTR 0.44 TCGA-EE-A2GM-06 21 37618552 37618552 A C DOPEY2 Missense_Mutation p.N1425T 0.41 deleterious(0.01) benign(0.052) TCGA-EE-A2GM-06 21 39755817 39755817 G A ERG Silent p.F323F 0.32 TCGA-EE-A2GM-06 21 41550985 41550985 G A DSCAM Missense_Mutation p.S939F 0.36 deleterious(0) benign(0) TCGA-EE-A2GM-06 21 43274895 43274895 G A PRDM15 Silent p.F472F 0.53 TCGA-EE-A2GM-06 21 45094999 45094999 C T RRP1B Silent p.F168F 0.38 TCGA-EE-A2GM-06 21 45959780 45959780 C T KRTAP10-1 Missense_Mutation p.C85Y 0.22 deleterious(0) unknown(0) TCGA-EE-A2GM-06 22 17072213 17072213 G T CCT8L2 Missense_Mutation p.P410T 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 22 17690585 17690585 G A CECR1 Intron 0.35 TCGA-EE-A2GM-06 22 22663071 22663071 C T BMS1P20 RNA 0.41 TCGA-EE-A2GM-06 22 29745331 29745331 G A AP1B1 Missense_Mutation p.S438F 0.35 deleterious(0) benign(0.103) TCGA-EE-A2GM-06 22 30415992 30415992 C T MTMR3 Missense_Mutation p.P782S 0.36 tolerated_low_confidence(0.47) benign(0.001) TCGA-EE-A2GM-06 22 31333803 31333803 G A MORC2 Silent p.I394I 0.50 TCGA-EE-A2GM-06 22 32843303 32843303 A G BPIFC Silent p.F90F 0.41 TCGA-EE-A2GM-06 22 35942941 35942941 C T RASD2 Missense_Mutation p.R29W 0.52 deleterious(0) probably_damaging(0.952) TCGA-EE-A2GM-06 22 37271929 37271929 C T NCF4 Missense_Mutation p.P288S 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-EE-A2GM-06 22 39141792 39141792 C T SUN2 Missense_Mutation p.G258E 0.44 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GM-06 22 39141793 39141793 C T SUN2 Missense_Mutation p.G258R 0.44 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GM-06 22 41919916 41919916 G A ACO2 Missense_Mutation p.E485K 0.49 tolerated_low_confidence(0.39) benign(0.111) TCGA-EE-A2GM-06 22 43950847 43950847 C T EFCAB6 Missense_Mutation p.E1184K 0.42 deleterious(0) possibly_damaging(0.861) TCGA-EE-A2GM-06 22 44074029 44074029 C T EFCAB6 Silent p.P422P 0.40 TCGA-EE-A2GM-06 22 44234846 44234846 C T SULT4A1 Missense_Mutation p.D137N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 22 44234847 44234847 C T SULT4A1 Silent p.K136K 0.29 TCGA-EE-A2GM-06 22 51008789 51008789 G A CPT1B Missense_Mutation p.S692F 0.44 tolerated(0.08) benign(0.003) TCGA-EE-A2GM-06 2 101097606 101097606 G A NMS Missense_Mutation p.G131R 0.64 tolerated(0.08) benign(0.146) TCGA-EE-A2GM-06 2 103095603 103095603 C T SLC9A4 Silent p.L188L 0.68 TCGA-EE-A2GM-06 2 103281750 103281750 C T SLC9A2 Silent p.F315F 0.19 TCGA-EE-A2GM-06 2 103300654 103300654 C T SLC9A2 Silent p.D428D 0.13 TCGA-EE-A2GM-06 2 103311511 103311511 C T SLC9A2 Missense_Mutation p.H509Y 0.21 deleterious(0) possibly_damaging(0.622) TCGA-EE-A2GM-06 2 109382601 109382601 C T RANBP2 Missense_Mutation p.S1869L 0.67 deleterious(0.01) benign(0.013) TCGA-EE-A2GM-06 2 113742458 113742458 G A IL36G Silent p.V114V 0.14 TCGA-EE-A2GM-06 2 113785692 113785692 C T IL36B Intron 0.60 TCGA-EE-A2GM-06 2 128249591 128249591 G A IWS1 Missense_Mutation p.P668L 0.24 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GM-06 2 128341869 128341869 A T MYO7B Missense_Mutation p.I506F 0.19 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2GM-06 2 128341871 128341871 C T MYO7B Silent p.I506I 0.18 TCGA-EE-A2GM-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 2 130738295 130738295 G A RAB6C Missense_Mutation p.E203K 0.13 tolerated_low_confidence(0.06) benign(0.042) TCGA-EE-A2GM-06 2 132021862 132021862 G A POTEE Missense_Mutation p.G945D 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2GM-06 2 136594359 136594359 G A LCT Silent p.P127P 0.71 TCGA-EE-A2GM-06 2 137814025 137814025 G A THSD7B Missense_Mutation p.G59R 0.22 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GM-06 2 139428555 139428555 G A NXPH2 Silent p.L244L 0.67 TCGA-EE-A2GM-06 2 141143519 141143519 G A LRP1B Missense_Mutation p.H3492Y 0.57 benign(0.415) TCGA-EE-A2GM-06 2 148716422 148716422 G A ORC4 Missense_Mutation p.A80V 0.33 tolerated(1) benign(0.006) TCGA-EE-A2GM-06 2 152536512 152536512 C T NEB Missense_Mutation p.E1023K 0.08 benign(0.01) TCGA-EE-A2GM-06 2 158287156 158287156 G A CYTIP Missense_Mutation p.L131F 0.61 deleterious(0.02) benign(0.093) TCGA-EE-A2GM-06 2 160303331 160303331 G A BAZ2B Nonsense_Mutation p.Q220* 0.22 TCGA-EE-A2GM-06 2 16085916 16085916 C T MYCN Silent p.P364P 0.69 TCGA-EE-A2GM-06 2 165802111 165802111 G A SLC38A11 Missense_Mutation p.P63L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 2 169833113 169833113 G A ABCB11 Missense_Mutation p.H428Y 0.21 tolerated(0.37) benign(0.002) TCGA-EE-A2GM-06 2 175263133 175263133 C T SCRN3 Missense_Mutation p.P41L 0.68 deleterious(0) probably_damaging(0.958) TCGA-EE-A2GM-06 2 179238645 179238645 C T OSBPL6 Missense_Mutation p.P500L 0.70 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GM-06 2 179430716 179430716 C T TTN Missense_Mutation p.V26715I 0.27 TCGA-EE-A2GM-06 2 179430717 179430717 C T TTN Silent p.K26714K 0.27 TCGA-EE-A2GM-06 2 179554052 179554052 G A TTN Missense_Mutation p.P10659L 0.67 TCGA-EE-A2GM-06 2 179592993 179592993 C T TTN Missense_Mutation p.E6520K 0.25 TCGA-EE-A2GM-06 2 179594547 179594547 C T TTN Missense_Mutation p.E6145K 0.62 TCGA-EE-A2GM-06 2 18112726 18112726 C T KCNS3 Silent p.L151L 0.68 TCGA-EE-A2GM-06 2 183790418 183790418 A - NCKAP1 3'UTR 0.11 TCGA-EE-A2GM-06 2 192248063 192248063 G A MYO1B Missense_Mutation p.E450K 0.54 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GM-06 2 192863847 192863847 G A TMEFF2 Silent p.I208I 0.19 TCGA-EE-A2GM-06 2 196753010 196753010 G A DNAH7 Missense_Mutation p.S1793L 0.35 tolerated(0.51) benign(0) TCGA-EE-A2GM-06 2 198950722 198950722 C T PLCL1 Silent p.P827P 0.31 TCGA-EE-A2GM-06 2 204161618 204161618 C T CYP20A1 Missense_Mutation p.S459L 0.51 deleterious(0) benign(0.05) TCGA-EE-A2GM-06 2 213872400 213872400 C T IKZF2 Missense_Mutation p.G422E 0.14 tolerated(0.24) probably_damaging(1) TCGA-EE-A2GM-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.62 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GM-06 2 228141104 228141104 C T COL4A3 Missense_Mutation p.P644L 0.16 unknown(0) TCGA-EE-A2GM-06 2 228881297 228881297 C T SPHKAP Missense_Mutation p.E1425K 0.20 deleterious(0.01) possibly_damaging(0.576) TCGA-EE-A2GM-06 2 228883977 228883977 C T SPHKAP Silent p.G531G 0.74 TCGA-EE-A2GM-06 2 228884138 228884138 C T SPHKAP Missense_Mutation p.E478K 0.62 tolerated(0.11) possibly_damaging(0.52) TCGA-EE-A2GM-06 2 229890313 229890313 C T PID1 3'UTR 0.65 TCGA-EE-A2GM-06 2 230341926 230341926 G A DNER Silent p.I397I 0.13 TCGA-EE-A2GM-06 2 230655911 230655911 C T TRIP12 Missense_Mutation p.R1416K 0.64 tolerated(0.61) benign(0.188) TCGA-EE-A2GM-06 2 230663753 230663753 G A TRIP12 Missense_Mutation p.T1032I 0.47 deleterious(0.03) possibly_damaging(0.549) TCGA-EE-A2GM-06 2 233349717 233349717 G A ECEL1 Silent p.L314L 0.72 TCGA-EE-A2GM-06 2 234184637 234184637 C T ATG16L1 Intron 0.18 TCGA-EE-A2GM-06 2 234652306 234652306 G A UGT1A10 Intron 0.60 TCGA-EE-A2GM-06 2 234676545 234676545 G A UGT1A10 Silent p.T346T 0.71 TCGA-EE-A2GM-06 2 241463193 241463193 C T ANKMY1 Intron 0.30 TCGA-EE-A2GM-06 2 24888752 24888752 A T NCOA1 Missense_Mutation p.D75V 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A2GM-06 2 26707371 26707371 G A OTOF Silent p.A392A 0.62 TCGA-EE-A2GM-06 2 26707372 26707372 G A OTOF Missense_Mutation p.A392V 0.60 tolerated(0.11) possibly_damaging(0.845) TCGA-EE-A2GM-06 2 27164833 27164833 G A DPYSL5 Missense_Mutation p.D369N 0.67 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2GM-06 2 27444202 27444202 C T CAD Silent p.I113I 0.65 TCGA-EE-A2GM-06 2 29366608 29366608 C T CLIP4 Missense_Mutation p.P228S 0.59 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GM-06 2 32475335 32475335 G A NLRC4 Missense_Mutation p.S533F 0.19 tolerated(0.07) benign(0.101) TCGA-EE-A2GM-06 2 45616412 45616412 G A SRBD1 3'UTR 0.41 TCGA-EE-A2GM-06 2 49190942 49190942 C T FSHR Missense_Mutation p.E340K 0.59 tolerated(0.51) benign(0.008) TCGA-EE-A2GM-06 2 55277310 55277310 C T RTN4 Missense_Mutation p.E43K 0.13 deleterious_low_confidence(0) benign(0.292) TCGA-EE-A2GM-06 2 55277311 55277311 C T RTN4 Silent p.E42E 0.16 TCGA-EE-A2GM-06 2 56145089 56145089 C T EFEMP1 Silent p.Q76Q 0.18 TCGA-EE-A2GM-06 2 74317124 74317124 C T TET3 Missense_Mutation p.R862W 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 2 79254178 79254178 C T REG3G Missense_Mutation p.P72S 0.67 tolerated(0.26) benign(0.062) TCGA-EE-A2GM-06 2 85554361 85554361 G A TGOLN2 Missense_Mutation p.P165L 0.18 deleterious(0) benign(0.06) TCGA-EE-A2GM-06 2 87015656 87015656 G A CD8A Missense_Mutation p.P218L 0.54 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GM-06 2 87085197 87085197 C T CD8B Missense_Mutation p.G129E 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GM-06 2 98744805 98744805 C T VWA3B Missense_Mutation p.S269F 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 3 101090875 101090875 A T SENP7 Nonsense_Mutation p.L258* 0.27 TCGA-EE-A2GM-06 3 113804540 113804540 C T QTRTD1 Missense_Mutation p.P358L 0.26 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GM-06 3 121340282 121340282 G A FBXO40 Silent p.G2G 0.32 TCGA-EE-A2GM-06 3 121724190 121724190 C T ILDR1 Missense_Mutation p.D94N 0.45 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GM-06 3 121994790 121994790 C T CASR Silent p.I503I 0.25 TCGA-EE-A2GM-06 3 124837650 124837650 C T SLC12A8 Missense_Mutation p.R292Q 0.37 deleterious(0.02) possibly_damaging(0.867) TCGA-EE-A2GM-06 3 125833481 125833481 C T ALDH1L1 Silent p.V677V 0.24 TCGA-EE-A2GM-06 3 128344386 128344386 G A RPN1 Silent p.S462S 0.64 TCGA-EE-A2GM-06 3 130311540 130311540 G A COL6A6 Missense_Mutation p.G1449R 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 3 130311541 130311541 G A COL6A6 Missense_Mutation p.G1449E 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 3 130887663 130887692 AATCTCTTTAGGAAAAAACACATTTAAAAG - NEK11 Splice_Site p.X393_splice 0.42 TCGA-EE-A2GM-06 3 143214261 143214261 C T SLC9A9 Silent p.E373E 0.26 TCGA-EE-A2GM-06 3 150400009 150400009 C T FAM194A Missense_Mutation p.G293E 0.62 tolerated(1) benign(0.002) TCGA-EE-A2GM-06 3 153958249 153958249 G A ARHGEF26 Silent p.G727G 0.35 TCGA-EE-A2GM-06 3 164758851 164758851 G A SI Missense_Mutation p.S679L 0.30 deleterious(0) benign(0.072) TCGA-EE-A2GM-06 3 167320025 167320025 G A WDR49 Missense_Mutation p.P48S 0.25 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GM-06 3 169540187 169540187 G A LRRIQ4 Missense_Mutation p.E160K 0.55 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A2GM-06 3 169656149 169656149 C T SAMD7 Missense_Mutation p.S399L 0.25 tolerated(0.07) benign(0.018) TCGA-EE-A2GM-06 3 169663741 169663741 G A RP11-379K17.4 RNA 0.60 TCGA-EE-A2GM-06 3 169664498 169664498 G A RP11-379K17.4 RNA 0.20 TCGA-EE-A2GM-06 3 173996663 173996663 G A NLGN1 Missense_Mutation p.R291Q 0.67 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A2GM-06 3 180334460 180334460 G A CCDC39 Silent p.I810I 0.45 TCGA-EE-A2GM-06 3 183903960 183903960 T A ABCF3 5'UTR 0.41 TCGA-EE-A2GM-06 3 184648292 184648292 C T VPS8 Missense_Mutation p.S945F 0.49 deleterious(0) possibly_damaging(0.62) TCGA-EE-A2GM-06 3 186395574 186395574 C T HRG Nonsense_Mutation p.Q494* 0.29 TCGA-EE-A2GM-06 3 195453418 195453418 G A MUC20 Silent p.T648T 0.29 TCGA-EE-A2GM-06 3 196386715 196386715 C T NRROS Silent p.N67N 0.24 TCGA-EE-A2GM-06 3 196386716 196386716 C T NRROS Missense_Mutation p.P68S 0.22 tolerated(0.43) benign(0.125) TCGA-EE-A2GM-06 3 197238769 197238769 G - BDH1 Frame_Shift_Del p.*344Efs*23 0.30 TCGA-EE-A2GM-06 3 24231811 24231811 C T THRB Missense_Mutation p.A13T 0.34 deleterious_low_confidence(0.02) benign(0.004) TCGA-EE-A2GM-06 3 3084744 3084744 G A CNTN4 Silent p.T865T 0.36 TCGA-EE-A2GM-06 3 33585027 33585027 G A CLASP2 Missense_Mutation p.S1109F 0.51 tolerated(0.07) benign(0.221) TCGA-EE-A2GM-06 3 36763055 36763055 G A DCLK3 Silent p.T516T 0.56 TCGA-EE-A2GM-06 3 36873929 36873929 C T TRANK1 Missense_Mutation p.G2338E 0.26 deleterious(0.02) possibly_damaging(0.747) TCGA-EE-A2GM-06 3 38603922 38603922 C T SCN5A Missense_Mutation p.R1316Q 0.60 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2GM-06 3 38936385 38936385 C T SCN11A Missense_Mutation p.G825E 0.29 tolerated(0.45) benign(0.079) TCGA-EE-A2GM-06 3 42734363 42734363 G A HHATL Silent p.F465F 0.66 TCGA-EE-A2GM-06 3 44491012 44491012 A C ZNF445 Silent p.A308A 0.46 TCGA-EE-A2GM-06 3 45942763 45942763 G A CCR9 Silent p.R161R 0.47 TCGA-EE-A2GM-06 3 46008746 46008746 G A FYCO1 Nonsense_Mutation p.Q694* 0.54 TCGA-EE-A2GM-06 3 46401188 46401188 G A CCR2 Missense_Mutation p.G321D 0.62 tolerated(0.53) benign(0.122) TCGA-EE-A2GM-06 3 47453656 47453656 G A PTPN23 Silent p.R1382R 0.29 TCGA-EE-A2GM-06 3 48455372 48455372 G A PLXNB1 Missense_Mutation p.P1440S 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 3 49698258 49698258 C T BSN Missense_Mutation p.R2994W 0.37 unknown(0) TCGA-EE-A2GM-06 3 49699864 49699864 C T BSN Missense_Mutation p.P3529L 0.21 unknown(0) TCGA-EE-A2GM-06 3 50103775 50103775 C T RBM6 Missense_Mutation p.P928L 0.24 tolerated(0.11) benign(0.01) TCGA-EE-A2GM-06 3 50103776 50103776 C T RBM6 Silent p.P928P 0.24 TCGA-EE-A2GM-06 3 51394410 51394410 G A DOCK3 Silent p.L1507L 0.24 TCGA-EE-A2GM-06 3 52400750 52400750 G A DNAH1 Missense_Mutation p.C1871Y 0.21 probably_damaging(0.967) TCGA-EE-A2GM-06 3 52510543 52510543 C T NISCH Silent p.V282V 0.29 TCGA-EE-A2GM-06 3 52597488 52597488 C T PBRM1 Silent p.K1274K 0.45 TCGA-EE-A2GM-06 3 53814128 53814128 C T CACNA1D Nonsense_Mutation p.R1575* 0.30 TCGA-EE-A2GM-06 3 54958890 54958890 G A LRTM1 Silent p.S120S 0.20 TCGA-EE-A2GM-06 3 58094262 58094262 G A FLNB Silent p.K673K 0.47 TCGA-EE-A2GM-06 3 58154278 58154278 G A FLNB Missense_Mutation p.G2468E 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GM-06 3 85984922 85984922 C T CADM2 Missense_Mutation p.P229S 0.28 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GM-06 3 89259185 89259185 C T EPHA3 Missense_Mutation p.P110L 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 3 98073499 98073499 G A OR5K4 Missense_Mutation p.D268N 0.30 tolerated(0.05) benign(0.248) TCGA-EE-A2GM-06 4 120214168 120214168 G A USP53 Silent p.Q1008Q 0.86 TCGA-EE-A2GM-06 4 123167914 123167914 C T KIAA1109 Missense_Mutation p.S1754F 0.81 probably_damaging(0.949) TCGA-EE-A2GM-06 4 141300277 141300277 C T SCOC Missense_Mutation p.H62Y 0.74 tolerated_low_confidence(0.17) benign(0.188) TCGA-EE-A2GM-06 4 146064533 146064533 G A OTUD4 Missense_Mutation p.P491L 0.81 tolerated(0.09) possibly_damaging(0.725) TCGA-EE-A2GM-06 4 146576316 146576316 C T MMAA Silent p.A329A 0.83 TCGA-EE-A2GM-06 4 146576317 146576317 C T MMAA Nonsense_Mutation p.R330* 0.84 TCGA-EE-A2GM-06 4 166385567 166385567 G A CPE Silent p.G111G 0.95 TCGA-EE-A2GM-06 4 25005151 25005151 C T LGI2 Silent p.R520R 0.84 TCGA-EE-A2GM-06 4 41621213 41621213 A T LIMCH1 Missense_Mutation p.S231C 0.80 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 4 44690046 44690048 CTG - GUF1 In_Frame_Del p.L321del 0.91 TCGA-EE-A2GM-06 4 62599214 62599214 G A LPHN3 Nonsense_Mutation p.W379* 0.84 TCGA-EE-A2GM-06 4 69535829 69535829 G A UGT2B15 Silent p.L170L 0.82 TCGA-EE-A2GM-06 4 70079874 70079874 G A UGT2B11 Silent p.F189F 0.71 TCGA-EE-A2GM-06 4 70080232 70080232 G A UGT2B11 Missense_Mutation p.S70F 0.88 deleterious(0.01) benign(0.139) TCGA-EE-A2GM-06 4 8609122 8609122 G A CPZ Silent p.E399E 0.82 TCGA-EE-A2GM-06 5 1214154 1214154 C T SLC6A19 Silent p.I287I 0.53 TCGA-EE-A2GM-06 5 131323771 131323771 C T ACSL6 Silent p.G267G 0.37 TCGA-EE-A2GM-06 5 134782503 134782503 G A C5orf20 Missense_Mutation p.S99L 0.33 tolerated_low_confidence(0.46) benign(0) TCGA-EE-A2GM-06 5 135583368 135583368 C T TRPC7 Silent p.A545A 0.39 TCGA-EE-A2GM-06 5 13885301 13885301 G A DNAH5 Missense_Mutation p.S927L 0.44 benign(0.002) TCGA-EE-A2GM-06 5 140188683 140188683 G A PCDHA4 Silent p.L637L 0.33 TCGA-EE-A2GM-06 5 140263866 140263866 G A PCDHA13 Silent p.E671E 0.35 TCGA-EE-A2GM-06 5 140573478 140573478 C T PCDHB10 Silent p.F451F 0.45 TCGA-EE-A2GM-06 5 140626432 140626432 C T PCDHB15 Missense_Mutation p.P429L 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GM-06 5 140729981 140729981 C T PCDHGB1 Silent p.L52L 0.27 TCGA-EE-A2GM-06 5 140740932 140740932 G A PCDHGB2 Silent p.L410L 0.36 TCGA-EE-A2GM-06 5 140754474 140754474 G A PCDHGA6 Missense_Mutation p.G275E 0.36 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2GM-06 5 140755085 140755085 C T PCDHGA6 Missense_Mutation p.P479S 0.35 deleterious_low_confidence(0.02) benign(0.259) TCGA-EE-A2GM-06 5 149360060 149360060 C T SLC26A2 Missense_Mutation p.L302F 0.26 tolerated(0.14) benign(0.021) TCGA-EE-A2GM-06 5 150924393 150924393 A C FAT2 Missense_Mutation p.L2099V 0.30 benign(0.057) TCGA-EE-A2GM-06 5 153174180 153174180 G A GRIA1 Splice_Site p.X767_splice 0.41 TCGA-EE-A2GM-06 5 153190623 153190623 C T GRIA1 Silent p.A863A 0.37 TCGA-EE-A2GM-06 5 154393531 154393531 G A KIF4B Missense_Mutation p.E38K 0.55 deleterious(0.05) benign(0.046) TCGA-EE-A2GM-06 5 156531730 156531730 C T HAVCR2 Missense_Mutation p.R142K 0.42 tolerated(0.41) benign(0.012) TCGA-EE-A2GM-06 5 156589773 156589773 G A FAM71B Silent p.T501T 0.39 TCGA-EE-A2GM-06 5 16177888 16177888 G A MARCH11 Missense_Mutation p.L214F 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GM-06 5 167880980 167880980 G A WWC1 Missense_Mutation p.E845K 0.51 tolerated(0.66) benign(0.019) TCGA-EE-A2GM-06 5 176396646 176396646 G A UIMC1 Missense_Mutation p.S140F 0.31 deleterious(0.01) possibly_damaging(0.514) TCGA-EE-A2GM-06 5 178392084 178392084 C T ZNF454 Nonsense_Mutation p.Q227* 0.43 TCGA-EE-A2GM-06 5 23518019 23518019 G A PRDM9 Missense_Mutation p.E111K 0.39 tolerated_low_confidence(0.28) benign(0.004) TCGA-EE-A2GM-06 5 32090902 32090902 G A PDZD2 Missense_Mutation p.G2450R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 5 38370407 38370407 C T EGFLAM Silent p.F185F 0.39 TCGA-EE-A2GM-06 5 39311416 39311416 C T C9 Missense_Mutation p.D312N 0.40 tolerated(0.17) benign(0.344) TCGA-EE-A2GM-06 5 40998125 40998125 G A MROH2B 3'UTR 0.40 TCGA-EE-A2GM-06 5 41007551 41007551 G A MROH2B Missense_Mutation p.S1205L 0.38 deleterious(0) benign(0.34) TCGA-EE-A2GM-06 5 41018473 41018473 G A MROH2B Silent p.I911I 0.39 TCGA-EE-A2GM-06 5 42807012 42807012 G A SEPP1 Silent p.F134F 0.41 TCGA-EE-A2GM-06 5 55237545 55237545 G A IL6ST Silent p.L708L 0.32 TCGA-EE-A2GM-06 5 68805337 68805337 C T OCLN Silent p.F140F 0.33 TCGA-EE-A2GM-06 5 76128776 76128776 C T F2RL1 Missense_Mutation p.A115V 0.43 tolerated(0.22) benign(0.098) TCGA-EE-A2GM-06 5 7870880 7870880 C T MTRR Intron 0.42 TCGA-EE-A2GM-06 5 79747489 79747489 C T ZFYVE16 Missense_Mutation p.P1190S 0.45 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GM-06 5 80404841 80404841 T C RASGRF2 Silent p.G594G 0.33 TCGA-EE-A2GM-06 5 80608420 80608422 TTT CA ZCCHC9 Frame_Shift_Del p.I252Tfs*24 0.39 TCGA-EE-A2GM-06 5 89954091 89954091 C T GPR98 Missense_Mutation p.P1583L 0.41 probably_damaging(0.995) TCGA-EE-A2GM-06 5 96232132 96232132 C T ERAP2 Missense_Mutation p.S432L 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 6 107232011 107232011 C T MIR587 RNA 0.50 TCGA-EE-A2GM-06 6 10751423 10751423 C T TMEM14B Missense_Mutation p.A53V 0.56 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GM-06 6 110086272 110086272 G A FIG4 Silent p.Q497Q 0.31 TCGA-EE-A2GM-06 6 117686903 117686903 C T ROS1 Silent p.G938G 0.47 TCGA-EE-A2GM-06 6 128302348 128302348 C T PTPRK Missense_Mutation p.M1214I 0.32 deleterious(0) possibly_damaging(0.813) TCGA-EE-A2GM-06 6 129419370 129419370 G A LAMA2 Missense_Mutation p.G150E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 6 132030999 132030999 T A CTAGE9 Missense_Mutation p.M387L 0.81 tolerated(0.09) benign(0.169) TCGA-EE-A2GM-06 6 13316816 13316816 G T TBC1D7 Missense_Mutation p.S169Y 0.25 deleterious(0) possibly_damaging(0.462) TCGA-EE-A2GM-06 6 135521270 135521270 G A MYB Missense_Mutation p.R586K 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GM-06 6 136468578 136468578 C T PDE7B Missense_Mutation p.R86C 0.53 deleterious(0.02) possibly_damaging(0.816) TCGA-EE-A2GM-06 6 137245541 137245541 G A SLC35D3 Missense_Mutation p.G320R 0.27 tolerated(0.45) benign(0.019) TCGA-EE-A2GM-06 6 139094904 139094904 C T CCDC28A Silent p.F31F 0.36 TCGA-EE-A2GM-06 6 139094905 139094905 C T CCDC28A Missense_Mutation p.R32C 0.36 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-EE-A2GM-06 6 147124734 147124734 C T ADGB Intron 0.39 TCGA-EE-A2GM-06 6 152464812 152464812 G A SYNE1 Silent p.I8355I 0.25 TCGA-EE-A2GM-06 6 152565696 152565696 G A SYNE1 Silent p.S6556S 0.48 TCGA-EE-A2GM-06 6 152565697 152565697 G A SYNE1 Missense_Mutation p.S6556F 0.48 benign(0.003) TCGA-EE-A2GM-06 6 152804288 152804288 C T SYNE1 Missense_Mutation p.E428K 0.31 benign(0.09) TCGA-EE-A2GM-06 6 155561736 155561736 G A TIAM2 Missense_Mutation p.E1081K 0.57 tolerated(0.13) benign(0.004) TCGA-EE-A2GM-06 6 160863793 160863793 G A SLC22A3 Missense_Mutation p.G430E 0.36 tolerated(0.09) possibly_damaging(0.755) TCGA-EE-A2GM-06 6 161152147 161152147 G A PLG Missense_Mutation p.D441N 0.58 tolerated(0.13) possibly_damaging(0.447) TCGA-EE-A2GM-06 6 161966399 161966399 C T PARK2 Intron 0.48 TCGA-EE-A2GM-06 6 165746617 165746617 C T PDE10A Splice_Site p.X756_splice 0.30 TCGA-EE-A2GM-06 6 167790039 167790039 C T TCP10 Missense_Mutation p.G191R 0.35 tolerated(0.06) probably_damaging(0.983) TCGA-EE-A2GM-06 6 168443302 168443302 G A KIF25 Silent p.A297A 0.29 TCGA-EE-A2GM-06 6 169648823 169648823 G A THBS2 Silent p.L100L 0.50 TCGA-EE-A2GM-06 6 17507875 17507875 C T CAP2 Missense_Mutation p.P150S 0.57 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A2GM-06 6 29141771 29141771 C T OR2J2 Missense_Mutation p.S120L 0.25 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2GM-06 6 31594926 31594926 C T PRRC2A Missense_Mutation p.P414L 0.30 unknown(0) TCGA-EE-A2GM-06 6 31597474 31597474 C T PRRC2A Silent p.A702A 0.46 TCGA-EE-A2GM-06 6 32974597 32974597 T A HLA-DOA 3'UTR 0.23 TCGA-EE-A2GM-06 6 35773633 35773633 C T LHFPL5 Silent p.F62F 0.56 TCGA-EE-A2GM-06 6 36823648 36823648 T C PPIL1 Missense_Mutation p.N148D 0.56 tolerated(1) benign(0.001) TCGA-EE-A2GM-06 6 36930953 36930953 G A PI16 Missense_Mutation p.E279K 0.25 deleterious(0.04) benign(0.042) TCGA-EE-A2GM-06 6 38754581 38754581 G A DNAH8 Silent p.G595G 0.34 TCGA-EE-A2GM-06 6 39688569 39688569 C T KIF6 Missense_Mutation p.D29N 0.33 deleterious(0.04) benign(0.11) TCGA-EE-A2GM-06 6 42631091 42631091 C T UBR2 Missense_Mutation p.P1211L 0.12 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GM-06 6 44797595 44797595 C T SUPT3H Splice_Site p.X316_splice 0.46 TCGA-EE-A2GM-06 6 46129099 46129099 C T ENPP5 Missense_Mutation p.M466I 0.30 tolerated_low_confidence(0.43) benign(0.001) TCGA-EE-A2GM-06 6 46839726 46839726 G T GPR116 Missense_Mutation p.S422Y 0.70 deleterious(0.01) possibly_damaging(0.474) TCGA-EE-A2GM-06 6 49754126 49754126 C T PGK2 Missense_Mutation p.D259N 0.56 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2GM-06 6 51923258 51923258 G A PKHD1 Missense_Mutation p.H459Y 0.48 tolerated(0.19) benign(0.009) TCGA-EE-A2GM-06 6 55216162 55216162 C T GFRAL Missense_Mutation p.P161L 0.50 tolerated(1) benign(0.001) TCGA-EE-A2GM-06 6 56499036 56499036 T C DST Missense_Mutation p.N635S 0.62 benign(0.017) TCGA-EE-A2GM-06 6 76024622 76024622 C T FILIP1 Missense_Mutation p.R309K 0.32 tolerated(1) benign(0.001) TCGA-EE-A2GM-06 6 83877668 83877668 G T DOPEY1 Nonsense_Mutation p.E2394* 0.38 TCGA-EE-A2GM-06 6 86197123 86197123 G A NT5E Silent p.G340G 0.59 TCGA-EE-A2GM-06 6 93953210 93953210 G A EPHA7 Silent p.I977I 0.35 TCGA-EE-A2GM-06 6 93967995 93967995 G A EPHA7 Silent p.F644F 0.74 TCGA-EE-A2GM-06 7 100176056 100176056 G A LRCH4 Silent p.L272L 0.45 TCGA-EE-A2GM-06 7 102114972 102114972 T C POLR2J Missense_Mutation p.K52E 0.74 deleterious(0.05) benign(0.169) TCGA-EE-A2GM-06 7 103243900 103243900 C T RELN Missense_Mutation p.E1062K 0.46 tolerated(0.57) possibly_damaging(0.828) TCGA-EE-A2GM-06 7 104753358 104753358 C T KMT2E Missense_Mutation p.P1719S 0.44 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A2GM-06 7 107704394 107704394 C T LAMB4 Missense_Mutation p.G958E 0.45 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A2GM-06 7 113518644 113518644 C T PPP1R3A Missense_Mutation p.E835K 0.39 tolerated(0.4) benign(0.016) TCGA-EE-A2GM-06 7 116411995 116411995 G A MET Missense_Mutation p.E1012K 0.55 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GM-06 7 11676277 11676277 G A THSD7A Missense_Mutation p.P168S 0.47 tolerated(0.64) benign(0.002) TCGA-EE-A2GM-06 7 126086239 126086239 C T GRM8 Missense_Mutation p.G873E 0.46 tolerated(0.24) benign(0.444) TCGA-EE-A2GM-06 7 133932392 133932392 C T LRGUK Nonsense_Mutation p.Q690* 0.29 TCGA-EE-A2GM-06 7 137801379 137801379 C T AKR1D1 Missense_Mutation p.P318S 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GM-06 7 138391325 138391325 C T ATP6V0A4 3'UTR 0.29 TCGA-EE-A2GM-06 7 138967769 138967769 G A UBN2 Splice_Site p.X707_splice 0.58 TCGA-EE-A2GM-06 7 140494206 140494206 G T BRAF Missense_Mutation p.P348T 0.39 tolerated(0.28) benign(0.024) TCGA-EE-A2GM-06 7 141315335 141315335 C T AGK Missense_Mutation p.T163I 0.43 tolerated(0.27) benign(0.05) TCGA-EE-A2GM-06 7 142032418 142032418 C T TRBV7-1 Missense_Mutation p.P80S 0.58 tolerated(0.14) benign(0.328) TCGA-EE-A2GM-06 7 142364469 142364469 G A TRBV24-1 Missense_Mutation p.G35E 0.63 tolerated(0.07) possibly_damaging(0.85) TCGA-EE-A2GM-06 7 142573418 142573418 C T TRPV6 Missense_Mutation p.D309N 0.38 deleterious(0.04) possibly_damaging(0.821) TCGA-EE-A2GM-06 7 142723335 142723335 C T OR9A2 Silent p.E295E 0.38 TCGA-EE-A2GM-06 7 142836249 142836249 C T PIP Missense_Mutation p.P95S 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A2GM-06 7 143141456 143141456 G A TAS2R60 Missense_Mutation p.R304K 0.48 tolerated(0.14) benign(0.047) TCGA-EE-A2GM-06 7 143771320 143771320 G A OR2A25 Missense_Mutation p.G3E 0.46 tolerated(0.53) benign(0.002) TCGA-EE-A2GM-06 7 148769063 148769063 G A ZNF786 Silent p.P267P 0.33 TCGA-EE-A2GM-06 7 150439336 150439336 G A GIMAP5 Missense_Mutation p.G37S 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 7 151093146 151093146 G A WDR86 Missense_Mutation p.P148S 0.53 tolerated(0.4) benign(0.033) TCGA-EE-A2GM-06 7 153584807 153584807 G A DPP6 Silent p.Q13Q 0.49 TCGA-EE-A2GM-06 7 155255077 155255077 C T EN2 Nonsense_Mutation p.R233* 0.35 TCGA-EE-A2GM-06 7 155301768 155301768 A C CNPY1 5'UTR 0.46 TCGA-EE-A2GM-06 7 156961790 156961790 C T UBE3C Nonsense_Mutation p.R57* 0.49 TCGA-EE-A2GM-06 7 157931073 157931073 G A PTPRN2 Nonsense_Mutation p.R349* 0.55 TCGA-EE-A2GM-06 7 19744493 19744493 A G TWISTNB Missense_Mutation p.L102P 0.47 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GM-06 7 26192126 26192126 A T NFE2L3 Missense_Mutation p.H3L 0.20 tolerated(0.67) benign(0) TCGA-EE-A2GM-06 7 44193018 44193018 C T GCK Silent p.L31L 0.44 TCGA-EE-A2GM-06 7 4874815 4874815 G A RADIL Missense_Mutation p.P280L 0.38 deleterious(0.01) possibly_damaging(0.627) TCGA-EE-A2GM-06 7 6426893 6426893 C T RAC1 Missense_Mutation p.P29L 0.34 deleterious(0.02) possibly_damaging(0.839) TCGA-EE-A2GM-06 7 64643370 64643370 C T INTS4L1 RNA 0.51 TCGA-EE-A2GM-06 7 72756871 72756871 G A FKBP6 Missense_Mutation p.D320N 0.42 tolerated(1) benign(0) TCGA-EE-A2GM-06 7 73008630 73008630 T C MLXIPL Missense_Mutation p.Y805C 0.40 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GM-06 7 73245767 73245767 C T CLDN4 Missense_Mutation p.A79V 0.48 deleterious(0.04) possibly_damaging(0.551) TCGA-EE-A2GM-06 7 74114635 74114635 C T GTF2I Silent p.D144D 0.40 TCGA-EE-A2GM-06 7 75028289 75028289 G A TRIM73 Silent p.K24K 0.27 TCGA-EE-A2GM-06 7 77973208 77973208 C T MAGI2 Missense_Mutation p.S432N 0.40 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GM-06 7 8099874 8099874 C T GLCCI1 Missense_Mutation p.S321F 0.35 tolerated(0.15) benign(0.004) TCGA-EE-A2GM-06 7 82578820 82578820 G A PCLO Missense_Mutation p.A3695V 0.38 unknown(0) TCGA-EE-A2GM-06 7 82583281 82583281 G A PCLO Nonsense_Mutation p.R2330* 0.40 TCGA-EE-A2GM-06 7 82784603 82784603 G A PCLO Nonsense_Mutation p.Q452* 0.46 TCGA-EE-A2GM-06 7 83022001 83022001 G A SEMA3E Nonsense_Mutation p.Q513* 0.46 TCGA-EE-A2GM-06 7 86394922 86394922 C T GRM3 Missense_Mutation p.S154F 0.56 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GM-06 7 92085683 92085683 C T GATAD1 Intron 0.39 TCGA-EE-A2GM-06 7 99489935 99489935 G A TRIM4 Missense_Mutation p.R452C 0.43 deleterious(0.01) possibly_damaging(0.744) TCGA-EE-A2GM-06 8 10469082 10469082 G A RP1L1 Silent p.S842S 0.42 TCGA-EE-A2GM-06 8 108264095 108264095 A T ANGPT1 Silent p.P495P 0.42 TCGA-EE-A2GM-06 8 113267621 113267621 C T CSMD3 Missense_Mutation p.G3300R 0.45 deleterious(0) benign(0.056) TCGA-EE-A2GM-06 8 114185976 114185976 C T CSMD3 Nonsense_Mutation p.W228* 0.37 TCGA-EE-A2GM-06 8 11421534 11421534 G A BLK Missense_Mutation p.E479K 0.45 tolerated(0.16) possibly_damaging(0.698) TCGA-EE-A2GM-06 8 116599788 116599788 C T TRPS1 Missense_Mutation p.A714T 0.43 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-EE-A2GM-06 8 119391886 119391886 G A SAMD12 Nonsense_Mutation p.Q126* 0.47 TCGA-EE-A2GM-06 8 119391887 119391887 G A SAMD12 Silent p.A125A 0.49 TCGA-EE-A2GM-06 8 124031497 124031497 G A DERL1 Silent p.F185F 0.46 TCGA-EE-A2GM-06 8 124659241 124659241 G A KLHL38 Missense_Mutation p.S455F 0.37 deleterious(0.01) benign(0.126) TCGA-EE-A2GM-06 8 124724918 124724918 C T ANXA13 Missense_Mutation p.G72R 0.50 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A2GM-06 8 130789651 130789651 G A GSDMC Silent p.S61S 0.40 TCGA-EE-A2GM-06 8 133196614 133196614 C T KCNQ3 Missense_Mutation p.E160K 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GM-06 8 139618686 139618686 C T COL22A1 Missense_Mutation p.G1348R 0.18 unknown(0) TCGA-EE-A2GM-06 8 142222446 142222446 G A SLC45A4 Silent p.P666P 0.48 TCGA-EE-A2GM-06 8 142222447 142222447 G A SLC45A4 Missense_Mutation p.P666L 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 8 144663478 144663478 G A EEF1D Silent p.S436S 0.55 TCGA-EE-A2GM-06 8 144672139 144672139 G A EEF1D Missense_Mutation p.S38F 0.46 deleterious(0.01) benign(0.252) TCGA-EE-A2GM-06 8 144940512 144940512 C T EPPK1 Missense_Mutation p.E2304K 0.08 probably_damaging(0.996) TCGA-EE-A2GM-06 8 144942944 144942944 C T EPPK1 Missense_Mutation p.G1493E 0.38 probably_damaging(0.999) TCGA-EE-A2GM-06 8 145722725 145722725 C T PPP1R16A Missense_Mutation p.P50S 0.21 tolerated(0.28) benign(0.002) TCGA-EE-A2GM-06 8 17612769 17612769 G T MTUS1 Missense_Mutation p.S183Y 0.46 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2GM-06 8 24188792 24188792 G A ADAM28 Silent p.G411G 0.46 TCGA-EE-A2GM-06 8 24365008 24365008 G A ADAM7 Missense_Mutation p.D742N 0.58 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-EE-A2GM-06 8 3081320 3081320 G A CSMD1 Missense_Mutation p.P1472L 0.41 probably_damaging(0.987) TCGA-EE-A2GM-06 8 35401996 35401996 G A UNC5D Intron 0.44 TCGA-EE-A2GM-06 8 37971719 37971719 C T ASH2L Missense_Mutation p.P199S 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 8 41561628 41561628 G A ANK1 Silent p.A775A 0.46 TCGA-EE-A2GM-06 8 42231804 42231804 C T DKK4 Silent p.T163T 0.42 TCGA-EE-A2GM-06 8 48874103 48874103 C T MCM4 Missense_Mutation p.P33L 0.45 deleterious(0.03) benign(0.007) TCGA-EE-A2GM-06 8 48874104 48874104 C T MCM4 Silent p.P33P 0.44 TCGA-EE-A2GM-06 8 49985420 49985420 C T C8orf22 Silent p.L11L 0.46 TCGA-EE-A2GM-06 8 55542625 55542625 C T RP1 Silent p.I2061I 0.47 TCGA-EE-A2GM-06 8 57228865 57228865 G A SDR16C5 Silent p.F14F 0.38 TCGA-EE-A2GM-06 8 68214699 68214699 C T ARFGEF1 Missense_Mutation p.E43K 0.53 deleterious(0.04) benign(0.428) TCGA-EE-A2GM-06 8 70585181 70585181 G A SLCO5A1 Missense_Mutation p.P824S 0.41 tolerated_low_confidence(0.06) benign(0.231) TCGA-EE-A2GM-06 8 73850273 73850273 C T KCNB2 Missense_Mutation p.H895Y 0.50 deleterious_low_confidence(0) benign(0.3) TCGA-EE-A2GM-06 8 77618383 77618383 C - ZFHX4 Frame_Shift_Del p.R688Gfs*37 0.24 TCGA-EE-A2GM-06 8 87226662 87226662 G A SLC7A13 Missense_Mutation p.P465S 0.44 tolerated(0.29) benign(0.083) TCGA-EE-A2GM-06 8 94770771 94770771 G A TMEM67 Missense_Mutation p.G125R 0.27 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 8 94770772 94770772 G A TMEM67 Missense_Mutation p.G125E 0.28 tolerated(0.06) probably_damaging(0.989) TCGA-EE-A2GM-06 8 95556101 95556101 G A KIAA1429 Missense_Mutation p.P45S 0.39 tolerated(0.47) probably_damaging(0.999) TCGA-EE-A2GM-06 8 95556102 95556102 G A KIAA1429 Silent p.P44P 0.40 TCGA-EE-A2GM-06 8 97847235 97847235 C T CPQ Silent p.F156F 0.40 TCGA-EE-A2GM-06 9 101787266 101787266 T G COL15A1 Silent p.G655G 0.48 TCGA-EE-A2GM-06 9 107361389 107361389 G A OR13C5 Silent p.F102F 0.89 TCGA-EE-A2GM-06 9 107380476 107380476 C T OR13C9 Missense_Mutation p.E4K 1.00 tolerated(0.51) benign(0.001) TCGA-EE-A2GM-06 9 113563251 113563251 G A MUSK Missense_Mutation p.G865R 0.94 deleterious(0.01) benign(0.003) TCGA-EE-A2GM-06 9 115805518 115805518 G T ZFP37 Silent p.P460P 0.40 TCGA-EE-A2GM-06 9 117810748 117810748 G A TNC Missense_Mutation p.S1548F 0.90 deleterious(0.04) probably_damaging(1) TCGA-EE-A2GM-06 9 127561590 127561590 G A OLFML2A Silent p.E163E 0.95 TCGA-EE-A2GM-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A2GM-06 9 131395598 131395598 G A SPTAN1 Silent p.S2473S 0.36 TCGA-EE-A2GM-06 9 133355822 133355822 G A ASS1 Missense_Mutation p.G275E 0.81 deleterious(0.01) possibly_damaging(0.717) TCGA-EE-A2GM-06 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.84 TCGA-EE-A2GM-06 9 32544245 32544245 A T TOPORS Missense_Mutation p.V93E 0.82 deleterious(0.05) possibly_damaging(0.798) TCGA-EE-A2GM-06 9 32633201 32633201 G A TAF1L Missense_Mutation p.R793W 0.83 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GM-06 9 35650537 35650537 C T SIT1 Nonsense_Mutation p.W66* 0.83 TCGA-EE-A2GM-06 9 69420403 69420403 G A ANKRD20A4 Silent p.K431K 0.06 TCGA-EE-A2GM-06 9 84530692 84530692 G A SPATA31D5P RNA 0.39 TCGA-EE-A2GM-06 9 84607770 84607770 G A SPATA31D1 Silent p.K795K 0.81 TCGA-EE-A2GM-06 9 8518124 8518124 C T PTPRD Missense_Mutation p.D423N 0.88 tolerated(1) benign(0.006) TCGA-EE-A2GM-06 9 98011571 98011571 C T FANCC Translation_Start_Site p.M1? 0.93 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GM-06 X 100240789 100240789 G A ARL13A Silent p.Q88Q 0.28 TCGA-EE-A2GM-06 X 100611929 100611929 C T BTK Missense_Mutation p.D398N 0.26 tolerated(0.86) benign(0.126) TCGA-EE-A2GM-06 X 101910617 101910617 G A GPRASP1 Missense_Mutation p.M592I 0.26 tolerated(0.8) benign(0.001) TCGA-EE-A2GM-06 X 109764284 109764284 C T TDGF1P3 RNA 0.34 TCGA-EE-A2GM-06 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.24 deleterious(0) probably_damaging(0.945) TCGA-EE-A2GM-06 X 11139765 11139765 C T HCCS Silent p.I214I 0.24 TCGA-EE-A2GM-06 X 115304404 115304404 G A AGTR2 Missense_Mutation p.E291K 0.57 tolerated(0.93) benign(0.013) TCGA-EE-A2GM-06 X 117576557 117576557 C T WDR44 Silent p.I766I 0.22 TCGA-EE-A2GM-06 X 117959952 117959952 C T ZCCHC12 Nonsense_Mutation p.Q249* 0.32 TCGA-EE-A2GM-06 X 118222375 118222375 C T KIAA1210 Missense_Mutation p.D940N 0.59 tolerated(0.52) benign(0.002) TCGA-EE-A2GM-06 X 118968882 118968882 C T UPF3B Missense_Mutation p.E471K 0.20 deleterious(0) benign(0.027) TCGA-EE-A2GM-06 X 122551517 122551517 G T GRIA3 Nonsense_Mutation p.E589* 0.28 TCGA-EE-A2GM-06 X 123179140 123179140 A - STAG2 Frame_Shift_Del p.M197Wfs*28 0.33 TCGA-EE-A2GM-06 X 123554567 123554567 G A TENM1 Missense_Mutation p.R1526C 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GM-06 X 128624166 128624166 G A SMARCA1 Nonsense_Mutation p.R607* 0.22 TCGA-EE-A2GM-06 X 12938651 12938651 C T TLR8 Missense_Mutation p.P498S 0.60 tolerated(0.22) benign(0.091) TCGA-EE-A2GM-06 X 130419291 130419291 G A IGSF1 Missense_Mutation p.P177S 0.27 tolerated(0.07) benign(0.169) TCGA-EE-A2GM-06 X 1317435 1317435 C T CRLF2 Silent p.Q210Q 0.58 TCGA-EE-A2GM-06 X 132161796 132161796 C T USP26 Silent p.G151G 0.42 TCGA-EE-A2GM-06 X 132352067 132352067 C T TFDP3 Missense_Mutation p.G74E 0.28 deleterious(0.05) benign(0.014) TCGA-EE-A2GM-06 X 133906162 133906162 G A FAM122B 3'UTR 0.32 TCGA-EE-A2GM-06 X 136112408 136112408 C T GPR101 Missense_Mutation p.E476K 0.60 tolerated(0.94) benign(0) TCGA-EE-A2GM-06 X 139586097 139586097 C A SOX3 Nonsense_Mutation p.E377* 0.25 TCGA-EE-A2GM-06 X 1401670 1401670 C T CSF2RA Missense_Mutation p.S25L 0.57 tolerated(0.34) benign(0) TCGA-EE-A2GM-06 X 140994330 140994330 C T MAGEC1 Silent p.S380S 0.53 TCGA-EE-A2GM-06 X 140994400 140994400 C T MAGEC1 Missense_Mutation p.P404S 0.50 tolerated_low_confidence(0.09) benign(0) TCGA-EE-A2GM-06 X 153048562 153048562 C T SRPK3 Missense_Mutation p.S246F 0.32 deleterious(0) possibly_damaging(0.85) TCGA-EE-A2GM-06 X 153137758 153137758 A G L1CAM Silent p.G83G 0.42 TCGA-EE-A2GM-06 X 153214805 153214805 C T HCFC1 Missense_Mutation p.G2034D 0.17 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A2GM-06 X 153214806 153214806 C T HCFC1 Missense_Mutation p.G2034S 0.19 deleterious_low_confidence(0.05) probably_damaging(0.991) TCGA-EE-A2GM-06 X 154020511 154020511 C T MPP1 Missense_Mutation p.G51E 0.32 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2GM-06 X 1585060 1585060 G A P2RY8 Missense_Mutation p.S131F 0.61 tolerated(0.71) benign(0.026) TCGA-EE-A2GM-06 X 18613499 18613499 A C CDKL5 Missense_Mutation p.E259A 0.29 deleterious_low_confidence(0.02) benign(0.117) TCGA-EE-A2GM-06 X 21519635 21519635 C T CNKSR2 Intron 0.62 TCGA-EE-A2GM-06 X 22056575 22056575 C T PHEX Intron 0.59 TCGA-EE-A2GM-06 X 23397803 23397803 C T PTCHD1 Silent p.I149I 0.25 TCGA-EE-A2GM-06 X 2945448 2945448 G A ARSH Silent p.E377E 0.21 TCGA-EE-A2GM-06 X 32563281 32563281 C T DMD Silent p.R721R 0.33 TCGA-EE-A2GM-06 X 34150271 34150271 G A FAM47A Missense_Mutation p.P42L 0.52 deleterious(0.05) possibly_damaging(0.634) TCGA-EE-A2GM-06 X 37028775 37028775 G A FAM47C Silent p.P764P 0.34 TCGA-EE-A2GM-06 X 48336352 48336352 T C FTSJ1 5'UTR 0.29 TCGA-EE-A2GM-06 X 48372689 48372689 C T PORCN Missense_Mutation p.L261F 0.58 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GM-06 X 48921477 48921477 G A CCDC120 Missense_Mutation p.R90H 0.20 tolerated(0.5) probably_damaging(0.911) TCGA-EE-A2GM-06 X 49066810 49066810 G A CACNA1F Silent p.N1524N 0.30 TCGA-EE-A2GM-06 X 49069133 49069133 G A CACNA1F Silent p.S1323S 0.34 TCGA-EE-A2GM-06 X 53600921 53600921 G A HUWE1 Missense_Mutation p.S2034L 0.60 benign(0.191) TCGA-EE-A2GM-06 X 53621488 53621488 G A HUWE1 Silent p.L1158L 0.16 TCGA-EE-A2GM-06 X 54949023 54949023 C T TRO Missense_Mutation p.P20S 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GM-06 X 54957177 54957177 T A TRO Silent p.G1340G 0.27 TCGA-EE-A2GM-06 X 5821513 5821513 G A NLGN4X Silent p.F402F 0.22 TCGA-EE-A2GM-06 X 5827207 5827207 C T NLGN4X Nonsense_Mutation p.W233* 0.29 TCGA-EE-A2GM-06 X 5827208 5827208 C T NLGN4X Nonsense_Mutation p.W233* 0.28 TCGA-EE-A2GM-06 X 65476039 65476039 T C HEPH Silent p.F975F 0.19 TCGA-EE-A2GM-06 X 66765996 66765996 C T AR Silent p.S336S 0.42 TCGA-EE-A2GM-06 X 69353833 69353833 C T IGBP1 Silent p.L12L 0.47 TCGA-EE-A2GM-06 X 69646805 69646805 G A GDPD2 Missense_Mutation p.E216K 0.57 tolerated(0.11) benign(0.049) TCGA-EE-A2GM-06 X 70521712 70521712 A G ITGB1BP2 Missense_Mutation p.N19S 0.22 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2GM-06 X 70586253 70586253 C T TAF1 Missense_Mutation p.S30F 0.28 deleterious_low_confidence(0.02) benign(0.444) TCGA-EE-A2GM-06 X 71522679 71522679 C T CITED1 Missense_Mutation p.G40D 0.33 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-EE-A2GM-06 X 73042056 73042056 G A XIST RNA 0.59 TCGA-EE-A2GM-06 X 73961104 73961104 C T KIAA2022 Silent p.K1096K 0.59 TCGA-EE-A2GM-06 X 76907702 76907702 C T ATRX Missense_Mutation p.D1487N 0.23 probably_damaging(0.999) TCGA-EE-A2GM-06 X 83400549 83400549 C T RPS6KA6 Silent p.G146G 0.30 TCGA-EE-A2GM-06 X 91642774 91642774 A C PCDH11X Missense_Mutation p.Q1062P 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2GN-06 10 102222964 102222964 C T WNT8B Silent p.F13F 0.70 TCGA-EE-A2GN-06 10 104128020 104128020 G A GBF1 Silent p.R895R 0.77 TCGA-EE-A2GN-06 10 11505081 11505081 G A USP6NL Missense_Mutation p.P633S 0.64 tolerated_low_confidence(0.83) benign(0.006) TCGA-EE-A2GN-06 10 115423657 115423657 G A NRAP 5'UTR 0.75 TCGA-EE-A2GN-06 10 124402887 124402887 C T DMBT1 Silent p.P2405P 0.91 TCGA-EE-A2GN-06 10 128841377 128841377 C T DOCK1 Missense_Mutation p.P696L 0.78 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2GN-06 10 135103431 135103431 G A TUBGCP2 Silent p.I447I 0.76 TCGA-EE-A2GN-06 10 25701363 25701363 C T GPR158 Silent p.F432F 0.72 TCGA-EE-A2GN-06 10 29775148 29775148 G A SVIL Missense_Mutation p.P1549S 0.77 deleterious(0.02) possibly_damaging(0.829) TCGA-EE-A2GN-06 10 3190299 3190299 G A PITRM1 Intron 0.84 TCGA-EE-A2GN-06 10 50531295 50531295 C T C10orf71 Silent p.F235F 1.00 TCGA-EE-A2GN-06 10 89717741 89717741 G T PTEN Nonsense_Mutation p.E256* 0.48 TCGA-EE-A2GN-06 10 90429622 90429622 C T LIPF Missense_Mutation p.P161S 0.72 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A2GN-06 10 96534969 96534969 G A CYP2C19 Missense_Mutation p.R108K 0.71 tolerated(1) benign(0) TCGA-EE-A2GN-06 10 99156022 99156022 G A RRP12 Missense_Mutation p.R136C 0.79 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GN-06 11 101849153 101849153 C T KIAA1377 Missense_Mutation p.P974L 0.43 tolerated(0.21) benign(0.126) TCGA-EE-A2GN-06 11 103818392 103818392 A C PDGFD Missense_Mutation p.S191A 0.41 deleterious(0.02) benign(0.097) TCGA-EE-A2GN-06 11 10615060 10615060 G A MRVI1 Silent p.S718S 0.35 TCGA-EE-A2GN-06 11 108106555 108106556 - GGTTA ATM Frame_Shift_Ins 0.22 TCGA-EE-A2GN-06 11 1097747 1097747 C T MUC2 Silent p.S2280S 0.50 TCGA-EE-A2GN-06 11 113934823 113934823 G A ZBTB16 Silent p.G267G 0.24 TCGA-EE-A2GN-06 11 117150915 117150915 T G RNF214 Nonsense_Mutation p.L362* 0.31 TCGA-EE-A2GN-06 11 118373601 118373601 C T KMT2A Missense_Mutation p.P2332S 0.36 benign(0.002) TCGA-EE-A2GN-06 11 124189434 124189434 G A OR8D2 Silent p.F220F 0.50 TCGA-EE-A2GN-06 11 1263828 1263828 C G MUC5B Missense_Mutation p.I1906M 0.31 unknown(0) TCGA-EE-A2GN-06 11 1268882 1268882 C T MUC5B Missense_Mutation p.S3591F 0.30 probably_damaging(0.984) TCGA-EE-A2GN-06 11 1269208 1269208 G A MUC5B Missense_Mutation p.A3700T 0.52 unknown(0) TCGA-EE-A2GN-06 11 1273722 1273722 C T MUC5B Missense_Mutation p.P5005S 0.21 unknown(0) TCGA-EE-A2GN-06 11 27397858 27397858 G A LGR4 Missense_Mutation p.S390F 0.42 deleterious(0.05) benign(0.021) TCGA-EE-A2GN-06 11 28080511 28080511 G A KIF18A Missense_Mutation p.T637I 0.45 deleterious(0.04) benign(0.009) TCGA-EE-A2GN-06 11 3381483 3381483 G A ZNF195 Missense_Mutation p.S252F 0.42 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A2GN-06 11 44193160 44193160 G A EXT2 Splice_Site p.X425_splice 0.44 TCGA-EE-A2GN-06 11 47436069 47436069 A T SLC39A13 Intron 0.36 TCGA-EE-A2GN-06 11 4944919 4944919 A G OR51G1 Silent p.F217F 0.47 TCGA-EE-A2GN-06 11 50003317 50003317 G A OR4C12 Missense_Mutation p.H241Y 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GN-06 11 55761980 55761980 C T OR5F1 Missense_Mutation p.G41E 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GN-06 11 57995461 57995461 C T OR10Q1 Missense_Mutation p.S296N 0.36 deleterious(0) benign(0.04) TCGA-EE-A2GN-06 11 59283128 59283128 C T OR4D9 Missense_Mutation p.T248I 0.34 tolerated(0.1) benign(0.25) TCGA-EE-A2GN-06 11 59610057 59610057 C T GIF Splice_Site p.X124_splice 0.36 TCGA-EE-A2GN-06 11 62288300 62288300 C T AHNAK Missense_Mutation p.G4530E 0.55 probably_damaging(1) TCGA-EE-A2GN-06 11 62292934 62292935 - A AHNAK Frame_Shift_Ins p.P2986Afs*6 0.31 TCGA-EE-A2GN-06 11 66108330 66108330 C T BRMS1 Silent p.L150L 0.33 TCGA-EE-A2GN-06 11 6816647 6816647 G A OR6A2 Missense_Mutation p.S98F 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GN-06 11 72297142 72297142 T G PDE2A Missense_Mutation p.K385T 0.42 deleterious(0.03) benign(0.333) TCGA-EE-A2GN-06 11 7949881 7949881 G A OR10A6 Missense_Mutation p.A110V 0.33 deleterious(0.03) benign(0.024) TCGA-EE-A2GN-06 11 7960996 7960996 C T OR10A3 Silent p.Q24Q 0.25 TCGA-EE-A2GN-06 12 100813746 100813746 G A SLC17A8 Missense_Mutation p.E527K 0.44 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2GN-06 12 101679413 101679413 C T UTP20 Silent p.F64F 0.48 TCGA-EE-A2GN-06 12 103695820 103695820 C T C12orf42 3'UTR 0.53 TCGA-EE-A2GN-06 12 104126784 104126784 G A STAB2 Missense_Mutation p.D1762N 0.42 deleterious(0.04) possibly_damaging(0.828) TCGA-EE-A2GN-06 12 108013802 108013802 G A BTBD11 Missense_Mutation p.R831Q 0.44 deleterious(0.03) probably_damaging(0.929) TCGA-EE-A2GN-06 12 110236480 110236480 G A TRPV4 Missense_Mutation p.A364V 0.54 tolerated(0.1) benign(0.02) TCGA-EE-A2GN-06 12 11034998 11034998 G A PRH1 Nonsense_Mutation p.Q113* 0.41 TCGA-EE-A2GN-06 12 111336817 111336817 G A CCDC63 Silent p.L410L 0.35 TCGA-EE-A2GN-06 12 120499591 120499591 C T CCDC64 Silent p.T241T 0.30 TCGA-EE-A2GN-06 12 121004729 121004729 G A RNF10 Missense_Mutation p.G663S 0.47 tolerated(0.67) benign(0.001) TCGA-EE-A2GN-06 12 121175679 121175679 G A ACADS Missense_Mutation p.R171Q 0.34 tolerated(0.55) benign(0.003) TCGA-EE-A2GN-06 12 121175680 121175680 G A ACADS Silent p.R171R 0.34 TCGA-EE-A2GN-06 12 125298849 125298849 C T SCARB1 Missense_Mutation p.G177S 0.38 tolerated(0.08) benign(0.084) TCGA-EE-A2GN-06 12 125298850 125298850 C T SCARB1 Silent p.V176V 0.40 TCGA-EE-A2GN-06 12 132681656 132681656 T G GALNT9 Missense_Mutation p.H237P 0.24 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-EE-A2GN-06 12 14578044 14578044 G A ATF7IP Missense_Mutation p.E399K 0.45 tolerated_low_confidence(0.31) possibly_damaging(0.486) TCGA-EE-A2GN-06 12 14578046 14578046 A G ATF7IP Silent p.E399E 0.45 TCGA-EE-A2GN-06 12 14927698 14927698 G A H2AFJ Silent p.L98L 0.40 TCGA-EE-A2GN-06 12 15262002 15262002 G A RERG 3'UTR 0.43 TCGA-EE-A2GN-06 12 18854486 18854486 C T PLCZ1 Silent p.K322K 0.39 TCGA-EE-A2GN-06 12 30862917 30862917 C G CAPRIN2 Missense_Mutation p.W1051C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GN-06 12 33529747 33529747 G A SYT10 3'UTR 0.51 TCGA-EE-A2GN-06 12 33538203 33538203 G A SYT10 Silent p.I367I 0.46 TCGA-EE-A2GN-06 12 39752106 39752106 T A KIF21A Missense_Mutation p.K363N 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2GN-06 12 39752107 39752107 T A KIF21A Missense_Mutation p.K363I 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 12 40078667 40078667 A - C12orf40 Splice_Site p.X429_splice 0.09 TCGA-EE-A2GN-06 12 45269724 45269724 C T NELL2 Intron 0.36 TCGA-EE-A2GN-06 12 46205282 46205282 T G ARID2 Silent p.L122L 0.26 TCGA-EE-A2GN-06 12 48272728 48272728 G A VDR Intron 0.32 TCGA-EE-A2GN-06 12 49443655 49443655 G A KMT2D Missense_Mutation p.S1239F 0.49 probably_damaging(0.996) TCGA-EE-A2GN-06 12 52777531 52777531 G A KRT84 Missense_Mutation p.L200F 0.52 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A2GN-06 12 52845466 52845466 C T KRT6B Missense_Mutation p.G133R 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GN-06 12 53900650 53900650 C T NPFF Nonsense_Mutation p.W84* 0.38 TCGA-EE-A2GN-06 12 53900651 53900651 C T NPFF Nonsense_Mutation p.W84* 0.38 TCGA-EE-A2GN-06 12 54448812 54448812 C T HOXC4 Silent p.N206N 0.50 TCGA-EE-A2GN-06 12 55820846 55820846 G A OR6C76 Missense_Mutation p.G270E 0.32 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-EE-A2GN-06 12 55846191 55846191 C T OR6C2 Missense_Mutation p.S65F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-EE-A2GN-06 12 5841763 5841763 G A ANO2 Nonsense_Mutation p.R490* 0.48 TCGA-EE-A2GN-06 12 6634836 6634836 C T NCAPD2 Missense_Mutation p.P768S 0.43 tolerated(1) benign(0.001) TCGA-EE-A2GN-06 12 66641485 66641485 C T IRAK3 Missense_Mutation p.T442I 0.26 tolerated(0.32) benign(0.01) TCGA-EE-A2GN-06 12 6948168 6948168 G A LEPREL2 Missense_Mutation p.R636Q 0.35 tolerated(0.67) benign(0.002) TCGA-EE-A2GN-06 12 6948169 6948169 G A LEPREL2 Silent p.R636R 0.36 TCGA-EE-A2GN-06 12 71533616 71533616 C T TSPAN8 Missense_Mutation p.E46K 0.47 tolerated(0.53) benign(0.068) TCGA-EE-A2GN-06 12 7177593 7177593 G A C1S Missense_Mutation p.G569S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 12 72013165 72013165 A T ZFC3H1 Missense_Mutation p.F1692I 0.46 tolerated(0.11) benign(0.002) TCGA-EE-A2GN-06 12 7637779 7637779 C T CD163 Missense_Mutation p.G898R 0.41 tolerated(0.09) probably_damaging(0.965) TCGA-EE-A2GN-06 12 77421669 77421669 G A E2F7 Missense_Mutation p.P712S 0.24 tolerated(0.24) benign(0.035) TCGA-EE-A2GN-06 12 95228369 95228369 C T MIR492 3'Flank 0.58 TCGA-EE-A2GN-06 12 99223131 99223131 C T ANKS1B Missense_Mutation p.E963K 0.48 tolerated(0.19) possibly_damaging(0.495) TCGA-EE-A2GN-06 13 107822874 107822874 G A FAM155A Silent p.L450L 0.46 TCGA-EE-A2GN-06 13 111926203 111926203 C T ARHGEF7 Silent p.S393S 0.22 TCGA-EE-A2GN-06 13 35738574 35738574 C T NBEA Silent p.S1387S 0.50 TCGA-EE-A2GN-06 13 36748872 36748872 G A SOHLH2 Missense_Mutation p.A336V 0.52 tolerated(0.11) possibly_damaging(0.554) TCGA-EE-A2GN-06 13 76427445 76427445 G A LMO7 Missense_Mutation p.G1295S 0.24 tolerated(0.42) benign(0.021) TCGA-EE-A2GN-06 13 76427446 76427446 G A LMO7 Missense_Mutation p.G1295D 0.24 tolerated(0.05) benign(0.36) TCGA-EE-A2GN-06 14 104493225 104493225 C T TDRD9 Silent p.V1077V 0.47 TCGA-EE-A2GN-06 14 104493226 104493226 C T TDRD9 Missense_Mutation p.L1078F 0.50 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GN-06 14 106552558 106552558 C A IGHV3-9 Silent p.G27G 0.43 TCGA-EE-A2GN-06 14 106805454 106805454 G A IGHV4-31 Silent p.L37L 0.24 TCGA-EE-A2GN-06 14 107034769 107034769 C T IGHV5-51 Missense_Mutation p.S104N 0.61 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2GN-06 14 22192426 22192426 G A TRAV3 Silent p.L67L 0.44 TCGA-EE-A2GN-06 14 23072902 23072902 A C ABHD4 Silent p.A186A 0.38 TCGA-EE-A2GN-06 14 23072910 23072910 C A ABHD4 Missense_Mutation p.A189D 0.36 tolerated(0.08) benign(0.016) TCGA-EE-A2GN-06 14 23072911 23072911 C T ABHD4 Silent p.A189A 0.37 TCGA-EE-A2GN-06 14 26917279 26917279 C T NOVA1 Silent p.R470R 0.31 TCGA-EE-A2GN-06 14 53173913 53173913 C T PSMC6 Silent p.I6I 0.41 TCGA-EE-A2GN-06 14 59113370 59113370 C T DACT1 Missense_Mutation p.R677W 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GN-06 14 60194363 60194363 C T RTN1 Missense_Mutation p.G347R 0.48 tolerated(0.1) benign(0.1) TCGA-EE-A2GN-06 14 60756565 60756565 C T PPM1A Missense_Mutation p.H405Y 0.41 tolerated(0.74) benign(0.002) TCGA-EE-A2GN-06 14 63784530 63784530 C T GPHB5 RNA 0.41 TCGA-EE-A2GN-06 14 74180022 74180022 G A PNMA1 Silent p.L107L 0.39 TCGA-EE-A2GN-06 14 75587855 75587855 G A NEK9 Silent p.I140I 0.40 TCGA-EE-A2GN-06 14 94046521 94046521 G A UNC79 Silent p.T643T 0.38 TCGA-EE-A2GN-06 14 94053205 94053205 G A UNC79 Missense_Mutation p.D818N 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2GN-06 14 96924440 96924440 C G AK7 Missense_Mutation p.N416K 0.37 tolerated(1) benign(0.002) TCGA-EE-A2GN-06 15 101929704 101929704 C T PCSK6 Missense_Mutation p.M424I 0.15 tolerated(0.17) benign(0.049) TCGA-EE-A2GN-06 15 102304776 102304776 G A DNM1P47 RNA 0.24 TCGA-EE-A2GN-06 15 22368705 22368705 C T OR4M2 Missense_Mutation p.L44F 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A2GN-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.14 deleterious(0.01) benign(0.037) TCGA-EE-A2GN-06 15 24923572 24923572 G A NPAP1 Missense_Mutation p.G853E 0.45 deleterious(0.01) possibly_damaging(0.763) TCGA-EE-A2GN-06 15 42042693 42042693 C T MGA Silent p.F2296F 0.48 TCGA-EE-A2GN-06 15 43653764 43653764 C T ZSCAN29 Missense_Mutation p.R689Q 0.44 tolerated(0.11) possibly_damaging(0.755) TCGA-EE-A2GN-06 15 43654012 43654012 G A ZSCAN29 Silent p.G606G 0.35 TCGA-EE-A2GN-06 15 43654013 43654013 C T ZSCAN29 Missense_Mutation p.G606D 0.34 tolerated(0.63) benign(0.002) TCGA-EE-A2GN-06 15 45258435 45258435 C T C15orf43 Missense_Mutation p.S143F 0.36 tolerated(0.2) benign(0.004) TCGA-EE-A2GN-06 15 51350066 51350066 G A TNFAIP8L3 3'UTR 0.35 TCGA-EE-A2GN-06 15 53081678 53081678 G A ONECUT1 Missense_Mutation p.P135L 0.42 tolerated(0.36) benign(0.091) TCGA-EE-A2GN-06 15 54792317 54792317 G A UNC13C Missense_Mutation p.E1701K 0.41 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-EE-A2GN-06 15 56155188 56155188 C T NEDD4 Silent p.E546E 0.33 TCGA-EE-A2GN-06 15 64418364 64418364 G A SNX1 Silent p.E199E 0.46 TCGA-EE-A2GN-06 15 69560649 69560649 C T GLCE Missense_Mutation p.S307F 0.38 deleterious(0.02) possibly_damaging(0.854) TCGA-EE-A2GN-06 15 75310792 75310792 G A SCAMP5 Silent p.T143T 0.72 TCGA-EE-A2GN-06 15 76071784 76071784 C T RP11-24M17.5 RNA 0.57 TCGA-EE-A2GN-06 15 78819883 78819883 C T HYKK Silent p.T213T 0.15 TCGA-EE-A2GN-06 15 80472540 80472540 C T FAH Silent p.L345L 0.18 TCGA-EE-A2GN-06 15 85327175 85327175 G A ZNF592 Silent p.G423G 0.67 TCGA-EE-A2GN-06 15 85327176 85327176 G A ZNF592 Missense_Mutation p.D424N 0.67 tolerated(0.41) benign(0.073) TCGA-EE-A2GN-06 15 88420243 88420243 A G NTRK3 Silent p.L815L 0.25 TCGA-EE-A2GN-06 15 90226924 90226924 G A PEX11A Missense_Mutation p.S143F 0.27 tolerated(0.23) benign(0.098) TCGA-EE-A2GN-06 15 98513861 98513861 C T ARRDC4 Missense_Mutation p.S363F 0.13 deleterious(0.01) possibly_damaging(0.748) TCGA-EE-A2GN-06 16 1399359 1399359 G A BAIAP3 3'UTR 0.19 TCGA-EE-A2GN-06 16 15715603 15715603 G A KIAA0430 Missense_Mutation p.L876F 0.51 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GN-06 16 2027165 2027165 C T TBL3 Silent p.F517F 0.51 TCGA-EE-A2GN-06 16 20471449 20471449 C T ACSM2A Nonsense_Mutation p.R5* 0.55 TCGA-EE-A2GN-06 16 25175983 25175983 C A LCMT1 Missense_Mutation p.L212I 0.27 tolerated(0.08) possibly_damaging(0.876) TCGA-EE-A2GN-06 16 28948595 28948595 C T CD19 Missense_Mutation p.P401L 0.68 tolerated(0.23) probably_damaging(0.991) TCGA-EE-A2GN-06 16 29884037 29884037 C T SEZ6L2 Intron 0.44 TCGA-EE-A2GN-06 16 3298935 3298935 C T MEFV Missense_Mutation p.G444R 0.28 deleterious(0.04) possibly_damaging(0.803) TCGA-EE-A2GN-06 16 3452001 3452001 C T ZNF174 5'UTR 0.57 TCGA-EE-A2GN-06 16 4556932 4556932 C T HMOX2 Silent p.T41T 0.59 TCGA-EE-A2GN-06 16 50357594 50357595 - A BRD7 Frame_Shift_Ins p.L449Ffs*14 0.37 TCGA-EE-A2GN-06 16 50813599 50813599 C T CYLD Missense_Mutation p.L388F 0.31 deleterious(0.04) probably_damaging(0.957) TCGA-EE-A2GN-06 16 53265346 53265346 T C CHD9 Missense_Mutation p.F768L 0.31 probably_damaging(0.998) TCGA-EE-A2GN-06 16 57188296 57188296 G A FAM192A Missense_Mutation p.S224F 0.48 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GN-06 16 58220709 58220709 G A CSNK2A2 Missense_Mutation p.R90C 0.41 tolerated(0.36) possibly_damaging(0.893) TCGA-EE-A2GN-06 16 70404177 70404177 C T DDX19A Nonsense_Mutation p.Q358* 0.35 TCGA-EE-A2GN-06 16 71748507 71748507 G A PHLPP2 Silent p.L64L 0.47 TCGA-EE-A2GN-06 16 76573616 76573616 G A CNTNAP4 Missense_Mutation p.G1001E 0.33 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A2GN-06 16 81077593 81077593 G A ATMIN Missense_Mutation p.G497E 0.37 tolerated(0.33) benign(0.013) TCGA-EE-A2GN-06 16 81077594 81077594 G A ATMIN Silent p.G497G 0.35 TCGA-EE-A2GN-06 16 88932317 88932317 G A PABPN1L Silent p.A96A 0.22 TCGA-EE-A2GN-06 16 89346549 89346549 C T ANKRD11 Missense_Mutation p.G2134E 0.44 probably_damaging(1) TCGA-EE-A2GN-06 17 10408560 10408560 C T MYH1 Silent p.L785L 0.46 TCGA-EE-A2GN-06 17 10428305 10428305 C T MYH2 Silent p.R1580R 0.40 TCGA-EE-A2GN-06 17 10436640 10436640 G A MYH2 Silent p.F801F 0.37 TCGA-EE-A2GN-06 17 18166422 18166422 C T MIEF2 Missense_Mutation p.P68L 0.36 deleterious(0.01) benign(0.087) TCGA-EE-A2GN-06 17 30202391 30202391 C T UTP6 Silent p.L389L 0.44 TCGA-EE-A2GN-06 17 32483320 32483320 C T ASIC2 Missense_Mutation p.E78K 0.33 deleterious(0.03) probably_damaging(0.959) TCGA-EE-A2GN-06 17 32904560 32904560 C T C17orf102 Missense_Mutation p.E164K 0.38 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EE-A2GN-06 17 3397658 3397658 C T ASPA Missense_Mutation p.P217S 0.41 tolerated(0.26) benign(0.008) TCGA-EE-A2GN-06 17 37791980 37791980 G A PPP1R1B Splice_Site p.X189_splice 0.50 TCGA-EE-A2GN-06 17 3854905 3854905 G A ATP2A3 Silent p.L98L 0.44 TCGA-EE-A2GN-06 17 3967729 3967729 G A ZZEF1 Silent p.P1548P 0.42 TCGA-EE-A2GN-06 17 3967730 3967730 G A ZZEF1 Missense_Mutation p.P1548L 0.41 deleterious(0.04) benign(0.111) TCGA-EE-A2GN-06 17 40822634 40822634 C T PLEKHH3 Missense_Mutation p.G504E 0.42 tolerated(0.15) unknown(0) TCGA-EE-A2GN-06 17 40822635 40822635 C T PLEKHH3 Missense_Mutation p.G504R 0.44 tolerated(0.1) unknown(0) TCGA-EE-A2GN-06 17 42195000 42195000 G A HDAC5 5'UTR 0.50 TCGA-EE-A2GN-06 17 42284846 42284846 C T UBTF Silent p.E715E 0.48 TCGA-EE-A2GN-06 17 42636091 42636091 G A FZD2 Nonsense_Mutation p.W345* 0.26 TCGA-EE-A2GN-06 17 42636092 42636092 G A FZD2 Missense_Mutation p.V346I 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GN-06 17 4391206 4391206 C T SPNS3 3'UTR 0.50 TCGA-EE-A2GN-06 17 4859297 4859297 C T ENO3 Missense_Mutation p.S309L 0.39 deleterious_low_confidence(0.01) benign(0.053) TCGA-EE-A2GN-06 17 51901099 51901099 C T KIF2B Silent p.I235I 0.53 TCGA-EE-A2GN-06 17 56572663 56572663 G A MTMR4 Missense_Mutation p.P947L 0.47 tolerated_low_confidence(0.68) benign(0.001) TCGA-EE-A2GN-06 17 56665017 56665017 C T TEX14 Missense_Mutation p.E911K 0.38 tolerated(0.24) benign(0.211) TCGA-EE-A2GN-06 17 64219848 64219848 C T APOH Missense_Mutation p.G128E 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GN-06 17 65026607 65026607 C T CACNG4 Silent p.I157I 0.34 TCGA-EE-A2GN-06 17 6604350 6604350 C T SLC13A5 Nonsense_Mutation p.W271* 0.41 TCGA-EE-A2GN-06 17 6930825 6930825 G A BCL6B Missense_Mutation p.D443N 0.41 deleterious(0) benign(0.052) TCGA-EE-A2GN-06 17 72469892 72469892 C T CD300A Silent p.F86F 0.42 TCGA-EE-A2GN-06 17 7329697 7329697 C T C17orf74 Silent p.R129R 0.41 TCGA-EE-A2GN-06 17 73758912 73758912 G C GALK1 Missense_Mutation p.I222M 0.22 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GN-06 17 7476025 7476025 G A SENP3 3'Flank 0.50 TCGA-EE-A2GN-06 17 7496405 7496405 G A FXR2 Silent p.T475T 0.33 TCGA-EE-A2GN-06 17 76989811 76989811 C G CANT1 Missense_Mutation p.G343R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 17 78280188 78280188 C T RNF213 Missense_Mutation p.R783C 0.40 benign(0.238) TCGA-EE-A2GN-06 17 78319648 78319648 C T RNF213 Missense_Mutation p.H2505Y 0.47 benign(0.032) TCGA-EE-A2GN-06 18 12802114 12802114 G A PTPN2 Missense_Mutation p.P299S 0.41 deleterious(0.05) benign(0.191) TCGA-EE-A2GN-06 18 21523870 21523870 G A LAMA3 Missense_Mutation p.G3049R 0.22 benign(0.12) TCGA-EE-A2GN-06 18 21523871 21523871 G A LAMA3 Missense_Mutation p.G3049E 0.23 benign(0.12) TCGA-EE-A2GN-06 18 2566903 2566903 G A METTL4 Missense_Mutation p.H105Y 0.41 deleterious(0.02) benign(0.098) TCGA-EE-A2GN-06 18 29039894 29039894 G A DSG3 Missense_Mutation p.E202K 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GN-06 18 30803134 30803134 C T CCDC178 Missense_Mutation p.G623E 0.40 tolerated(1) benign(0) TCGA-EE-A2GN-06 18 31320290 31320290 C T ASXL3 Silent p.I974I 0.31 TCGA-EE-A2GN-06 18 42531392 42531392 C T SETBP1 Missense_Mutation p.P696L 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GN-06 18 47803465 47803465 G A MBD1 Missense_Mutation p.P74S 0.28 tolerated(0.11) benign(0.139) TCGA-EE-A2GN-06 18 47803466 47803466 G A MBD1 Silent p.A73A 0.25 TCGA-EE-A2GN-06 18 70526090 70526090 C T NETO1 Missense_Mutation p.G147E 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GN-06 19 10398009 10398009 G A ICAM4 Nonsense_Mutation p.W107* 0.47 TCGA-EE-A2GN-06 19 10479086 10479086 G A TYK2 Missense_Mutation p.P68S 0.27 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GN-06 19 10934479 10934479 C T DNM2 Silent p.D599D 0.14 TCGA-EE-A2GN-06 19 12577622 12577622 C T ZNF709 Missense_Mutation p.E16K 0.40 deleterious(0) benign(0.253) TCGA-EE-A2GN-06 19 12738711 12738711 C T ZNF791 Missense_Mutation p.T123I 0.43 tolerated(0.09) benign(0.018) TCGA-EE-A2GN-06 19 1434783 1434783 C T DAZAP1 Missense_Mutation p.P366S 0.29 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A2GN-06 19 15164383 15164383 G A CASP14 Missense_Mutation p.E40K 0.34 tolerated(0.8) benign(0.094) TCGA-EE-A2GN-06 19 17283772 17283772 G A MYO9B Missense_Mutation p.G714S 0.22 tolerated(0.2) probably_damaging(0.936) TCGA-EE-A2GN-06 19 17283773 17283773 G A MYO9B Splice_Site p.X714_splice 0.22 TCGA-EE-A2GN-06 19 17752257 17752257 T A UNC13A Missense_Mutation p.I861F 0.56 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GN-06 19 19646238 19646238 C T YJEFN3 Silent p.F174F 0.52 TCGA-EE-A2GN-06 19 2877867 2877867 G A ZNF556 Missense_Mutation p.R304Q 0.32 tolerated(0.29) benign(0.36) TCGA-EE-A2GN-06 19 2991913 2991913 G T TLE6 Silent p.P439P 0.14 TCGA-EE-A2GN-06 19 37440953 37440953 C T ZNF568 Missense_Mutation p.H300Y 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 19 3905638 3905638 G A ATCAY Missense_Mutation p.E115K 0.50 deleterious(0.05) benign(0.004) TCGA-EE-A2GN-06 19 39125707 39125707 C T EIF3K Nonsense_Mutation p.Q192* 0.48 TCGA-EE-A2GN-06 19 39989682 39989682 A G DLL3 Missense_Mutation p.Q23R 0.23 deleterious(0.03) probably_damaging(0.966) TCGA-EE-A2GN-06 19 41352829 41352829 G A CYP2A6 Missense_Mutation p.P261L 0.35 benign(0.312) TCGA-EE-A2GN-06 19 41518636 41518636 A G CYP2B6 Missense_Mutation p.K404E 0.42 tolerated(0.09) benign(0.008) TCGA-EE-A2GN-06 19 41600331 41600331 C T CYP2A13 Silent p.L385L 0.30 TCGA-EE-A2GN-06 19 43031325 43031325 G A CEACAM1 Nonsense_Mutation p.R98* 0.37 TCGA-EE-A2GN-06 19 43679476 43679476 C T PSG5 Silent p.K285K 0.41 TCGA-EE-A2GN-06 19 45179592 45179592 C T CEACAM19 Silent p.I158I 0.32 TCGA-EE-A2GN-06 19 46511509 46511509 C G CCDC61 Silent p.G167G 0.25 TCGA-EE-A2GN-06 19 47935677 47935677 C A SLC8A2 Silent p.G712G 0.35 TCGA-EE-A2GN-06 19 47935679 47935679 C A SLC8A2 Missense_Mutation p.G712W 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GN-06 19 48523108 48523108 G A ELSPBP1 Missense_Mutation p.G163E 0.48 tolerated(0.24) benign(0.146) TCGA-EE-A2GN-06 19 50001289 50001289 G A RPS11 Silent p.L113L 0.10 TCGA-EE-A2GN-06 19 50165495 50165495 G A IRF3 Missense_Mutation p.S231F 0.39 tolerated(0.05) possibly_damaging(0.86) TCGA-EE-A2GN-06 19 50249816 50249816 T C TSKS Silent p.A301A 0.09 TCGA-EE-A2GN-06 19 52131193 52131193 C T SIGLEC5 Silent p.G297G 0.43 TCGA-EE-A2GN-06 19 56090016 56090016 G C ZNF579 Silent p.P330P 0.48 TCGA-EE-A2GN-06 19 56312966 56312966 C T NLRP11 Missense_Mutation p.E715K 0.42 tolerated(0.68) benign(0.001) TCGA-EE-A2GN-06 19 58563958 58563958 G A ZSCAN1 Missense_Mutation p.R189K 0.38 tolerated(0.43) benign(0.019) TCGA-EE-A2GN-06 19 58573071 58573071 G A ZNF135 Missense_Mutation p.V65M 0.41 tolerated(0.08) benign(0.034) TCGA-EE-A2GN-06 19 58578659 58578659 C T ZNF135 Silent p.P293P 0.33 TCGA-EE-A2GN-06 19 6694622 6694622 C T C3 Missense_Mutation p.E992K 0.27 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GN-06 19 9077155 9077155 C T MUC16 Missense_Mutation p.D3431N 0.45 unknown(0) TCGA-EE-A2GN-06 1 103491421 103491421 C T COL11A1 Intron 0.43 TCGA-EE-A2GN-06 1 110167981 110167981 C T AMPD2 Missense_Mutation p.P104S 0.42 tolerated_low_confidence(0.31) benign(0.01) TCGA-EE-A2GN-06 1 110167982 110167982 C T AMPD2 Missense_Mutation p.P104L 0.43 tolerated_low_confidence(0.08) benign(0.006) TCGA-EE-A2GN-06 1 110735292 110735292 C T SLC6A17 Missense_Mutation p.P424L 0.33 tolerated(0.29) benign(0.098) TCGA-EE-A2GN-06 1 114196509 114196509 C A MAGI3 Missense_Mutation p.P833H 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 1 115229505 115229505 G A AMPD1 Missense_Mutation p.T114I 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A2GN-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.30 deleterious(0.01) benign(0.045) TCGA-EE-A2GN-06 1 12202437 12202437 C T TNFRSF8 Missense_Mutation p.P546L 0.36 tolerated(0.11) possibly_damaging(0.735) TCGA-EE-A2GN-06 1 12887485 12887485 G A PRAMEF11 Silent p.L124L 0.38 TCGA-EE-A2GN-06 1 12942930 12942930 G A PRAMEF4 Missense_Mutation p.R96C 0.24 tolerated(0.08) benign(0.009) TCGA-EE-A2GN-06 1 151076051 151076051 C T GABPB2 Silent p.A212A 0.61 TCGA-EE-A2GN-06 1 152191810 152191810 G A HRNR Silent p.H765H 0.18 TCGA-EE-A2GN-06 1 152191811 152191811 T G HRNR Missense_Mutation p.H765P 0.15 unknown(0) TCGA-EE-A2GN-06 1 152327317 152327317 C T FLG2 Missense_Mutation p.G982E 0.62 unknown(0) TCGA-EE-A2GN-06 1 153598807 153598807 G A S100A13 Missense_Mutation p.H48Y 0.25 deleterious(0.01) possibly_damaging(0.881) TCGA-EE-A2GN-06 1 155732094 155732094 G A GON4L Missense_Mutation p.R1600W 0.62 deleterious(0.01) possibly_damaging(0.632) TCGA-EE-A2GN-06 1 156698963 156698963 C A RRNAD1 Missense_Mutation p.R23S 0.09 tolerated(0.13) benign(0.103) TCGA-EE-A2GN-06 1 1572329 1572329 G A CDK11B Missense_Mutation p.P580L 0.32 unknown(0) TCGA-EE-A2GN-06 1 1572330 1572330 G A CDK11B Missense_Mutation p.P580S 0.29 unknown(0) TCGA-EE-A2GN-06 1 157811519 157811519 G A CD5L 5'UTR 0.65 TCGA-EE-A2GN-06 1 15813865 15813865 G A CELA2B Missense_Mutation p.G242D 0.47 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GN-06 1 158576582 158576582 G A OR10Z1 Missense_Mutation p.M118I 0.33 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A2GN-06 1 159778988 159778988 G A FCRL6 Missense_Mutation p.G186D 0.74 tolerated(0.13) possibly_damaging(0.867) TCGA-EE-A2GN-06 1 160461134 160461134 G A SLAMF6 Nonsense_Mutation p.Q143* 0.63 TCGA-EE-A2GN-06 1 161253506 161253506 G A PCP4L1 Missense_Mutation p.E20K 0.70 tolerated(0.14) probably_damaging(0.953) TCGA-EE-A2GN-06 1 161976240 161976240 C T OLFML2B Silent p.K190K 0.64 TCGA-EE-A2GN-06 1 16255268 16255268 G A SPEN Missense_Mutation p.E845K 0.49 benign(0.345) TCGA-EE-A2GN-06 1 165532895 165532895 G A LRRC52 Missense_Mutation p.G259E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 1 166963267 166963267 G A MAEL Missense_Mutation p.E162K 0.56 tolerated(0.63) possibly_damaging(0.591) TCGA-EE-A2GN-06 1 167666966 167666966 G A RCSD1 Missense_Mutation p.E369K 0.64 tolerated_low_confidence(0.17) benign(0.018) TCGA-EE-A2GN-06 1 168698205 168698205 C T DPT Missense_Mutation p.D70N 0.31 deleterious(0.02) possibly_damaging(0.457) TCGA-EE-A2GN-06 1 177199155 177199155 C T BRINP2 Missense_Mutation p.S48F 0.27 tolerated_low_confidence(0.06) benign(0.205) TCGA-EE-A2GN-06 1 177226357 177226357 G A BRINP2 Missense_Mutation p.R169K 0.22 tolerated(0.65) benign(0.006) TCGA-EE-A2GN-06 1 181764090 181764090 G A CACNA1E Missense_Mutation p.E2040K 0.62 deleterious(0) possibly_damaging(0.678) TCGA-EE-A2GN-06 1 181767811 181767811 C T CACNA1E Silent p.G2261G 0.25 TCGA-EE-A2GN-06 1 185143988 185143988 C T SWT1 Missense_Mutation p.P237S 0.65 deleterious(0.02) possibly_damaging(0.728) TCGA-EE-A2GN-06 1 186024788 186024788 T A HMCN1 Missense_Mutation p.Y2376N 0.74 probably_damaging(0.998) TCGA-EE-A2GN-06 1 186062349 186062349 C T HMCN1 Missense_Mutation p.P3324L 0.46 possibly_damaging(0.542) TCGA-EE-A2GN-06 1 19199413 19199413 G A ALDH4A1 Missense_Mutation p.R540C 0.42 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GN-06 1 197411332 197411332 G T CRB1 Silent p.P1305P 0.28 TCGA-EE-A2GN-06 1 201356012 201356012 C T LAD1 Silent p.E159E 0.57 TCGA-EE-A2GN-06 1 202096948 202096948 C T GPR37L1 Missense_Mutation p.P237L 0.64 tolerated(0.2) benign(0.071) TCGA-EE-A2GN-06 1 203155868 203155868 C T CHI3L1 5'UTR 0.58 TCGA-EE-A2GN-06 1 205549978 205549978 C T MFSD4 Missense_Mutation p.P207S 0.62 tolerated(0.39) benign(0.001) TCGA-EE-A2GN-06 1 209974644 209974644 G A IRF6 Missense_Mutation p.P39S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 1 214638224 214638224 G A PTPN14 5'UTR 0.57 TCGA-EE-A2GN-06 1 22183635 22183635 G A HSPG2 Silent p.T1816T 0.43 TCGA-EE-A2GN-06 1 223438088 223438088 C T SUSD4 Missense_Mutation p.G203E 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 1 24143197 24143197 G A HMGCL Silent p.L106L 0.39 TCGA-EE-A2GN-06 1 247151498 247151498 G A ZNF695 Nonsense_Mutation p.Q107* 0.64 TCGA-EE-A2GN-06 1 247151499 247151499 G A ZNF695 Silent p.F106F 0.63 TCGA-EE-A2GN-06 1 247588892 247588892 G C NLRP3 Missense_Mutation p.C716S 0.20 tolerated(0.23) benign(0.006) TCGA-EE-A2GN-06 1 248129009 248129009 G A OR2AK2 Missense_Mutation p.E126K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GN-06 1 248814003 248814003 G A OR2T27 Silent p.F61F 0.47 TCGA-EE-A2GN-06 1 24975472 24975472 C T SRRM1 Silent p.I119I 0.36 TCGA-EE-A2GN-06 1 38230662 38230662 C T EPHA10 Missense_Mutation p.G26E 0.33 tolerated(0.15) possibly_damaging(0.638) TCGA-EE-A2GN-06 1 40928242 40928242 G A ZFP69B Missense_Mutation p.E196K 0.50 tolerated(0.11) benign(0.004) TCGA-EE-A2GN-06 1 41454276 41454276 C T CTPS1 Missense_Mutation p.T150I 0.42 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GN-06 1 41454277 41454277 C T CTPS1 Silent p.T150T 0.42 TCGA-EE-A2GN-06 1 47610323 47610323 C T CYP4A22 Silent p.I333I 0.23 TCGA-EE-A2GN-06 1 4772234 4772234 C T AJAP1 Missense_Mutation p.H102Y 0.50 tolerated(0.08) possibly_damaging(0.859) TCGA-EE-A2GN-06 1 55599781 55599781 G A USP24 Nonsense_Mutation p.Q1115* 0.58 TCGA-EE-A2GN-06 1 71544186 71544186 C T ZRANB2 Missense_Mutation p.E58K 0.33 deleterious(0.04) possibly_damaging(0.741) TCGA-EE-A2GN-06 1 78430359 78430359 G A FUBP1 Missense_Mutation p.S270L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GN-06 1 89654350 89654350 G A GBP4 Missense_Mutation p.S442F 0.47 tolerated(0.14) benign(0.065) TCGA-EE-A2GN-06 20 23421056 23421056 C T CSTL1 Missense_Mutation p.S51F 0.60 deleterious(0.04) possibly_damaging(0.877) TCGA-EE-A2GN-06 20 30584444 30584444 C T XKR7 Silent p.F308F 0.57 TCGA-EE-A2GN-06 20 31375128 31375128 G A DNMT3B Silent p.E175E 0.35 TCGA-EE-A2GN-06 20 33578836 33578836 C T MYH7B Nonsense_Mutation p.Q741* 0.30 TCGA-EE-A2GN-06 20 33586218 33586218 G A MYH7B Missense_Mutation p.E1332K 0.58 possibly_damaging(0.758) TCGA-EE-A2GN-06 20 35443718 35443718 G A SOGA1 Silent p.L709L 0.34 TCGA-EE-A2GN-06 20 43108823 43108823 C T TTPAL Missense_Mutation p.R62C 0.64 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GN-06 20 43804541 43804541 C T PI3 Missense_Mutation p.P40L 0.32 tolerated(0.23) benign(0.001) TCGA-EE-A2GN-06 20 43804764 43804764 C T PI3 Silent p.F114F 0.70 TCGA-EE-A2GN-06 20 44645012 44645012 C T MMP9 3'UTR 0.35 TCGA-EE-A2GN-06 20 47628500 47628500 C T ARFGEF2 Missense_Mutation p.S1266F 0.30 deleterious(0.03) possibly_damaging(0.684) TCGA-EE-A2GN-06 20 47990378 47990378 G A KCNB1 Silent p.P573P 0.27 TCGA-EE-A2GN-06 20 48252989 48252989 G A B4GALT5 Silent p.L343L 0.24 TCGA-EE-A2GN-06 20 51872921 51872921 C T TSHZ2 Missense_Mutation p.S975L 0.27 tolerated(0.46) benign(0.354) TCGA-EE-A2GN-06 20 52199275 52199275 G A ZNF217 Missense_Mutation p.P31S 0.34 deleterious(0) benign(0) TCGA-EE-A2GN-06 21 15538740 15538740 C T LIPI Missense_Mutation p.D247N 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 21 27840879 27840879 G A CYYR1 Missense_Mutation p.P136S 0.50 tolerated(0.18) possibly_damaging(0.562) TCGA-EE-A2GN-06 21 37619841 37619841 C T DOPEY2 Missense_Mutation p.S1575F 0.56 deleterious(0) possibly_damaging(0.602) TCGA-EE-A2GN-06 21 38593925 38593925 G A DSCR3 3'Flank 0.64 TCGA-EE-A2GN-06 21 41710220 41710220 G A DSCAM Missense_Mutation p.P531S 0.27 tolerated(0.07) probably_damaging(0.985) TCGA-EE-A2GN-06 21 42613747 42613747 C T BACE2 Missense_Mutation p.P207L 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 21 46309219 46309219 C T ITGB2 Missense_Mutation p.G617S 0.34 tolerated(0.17) benign(0.214) TCGA-EE-A2GN-06 22 19196487 19196487 G A CLTCL1 Silent p.I1129I 0.20 TCGA-EE-A2GN-06 22 22127173 22127173 G A MAPK1 Missense_Mutation p.P319S 0.26 deleterious(0.01) benign(0.398) TCGA-EE-A2GN-06 22 24376964 24376964 G A GSTT1 Missense_Mutation p.S129F 0.26 deleterious(0) possibly_damaging(0.547) TCGA-EE-A2GN-06 22 25301148 25301148 G A SGSM1 Missense_Mutation p.D993N 0.27 deleterious(0.03) possibly_damaging(0.854) TCGA-EE-A2GN-06 22 29921856 29921856 G A THOC5 Silent p.A382A 0.60 TCGA-EE-A2GN-06 22 32587083 32587083 G A RFPL2 Silent p.T271T 0.69 TCGA-EE-A2GN-06 22 32587084 32587084 G A RFPL2 Missense_Mutation p.T271I 0.68 deleterious(0.02) possibly_damaging(0.526) TCGA-EE-A2GN-06 22 33670389 33670389 C T LARGE 3'UTR 0.71 TCGA-EE-A2GN-06 22 36538042 36538042 C T APOL3 Missense_Mutation p.E139K 0.66 tolerated(0.94) benign(0) TCGA-EE-A2GN-06 22 38822972 38822972 T G KCNJ4 Missense_Mutation p.E389A 0.29 tolerated(0.31) benign(0.021) TCGA-EE-A2GN-06 22 43950763 43950763 G A EFCAB6 Silent p.L1212L 0.23 TCGA-EE-A2GN-06 22 43950764 43950764 G A EFCAB6 Silent p.I1211I 0.23 TCGA-EE-A2GN-06 22 45122507 45122507 C T PRR5 Silent p.F128F 0.47 TCGA-EE-A2GN-06 22 47091104 47091104 T A CERK Intron 0.65 TCGA-EE-A2GN-06 2 102805736 102805736 T G IL1RL2 Missense_Mutation p.W87G 0.36 tolerated(0.25) benign(0.002) TCGA-EE-A2GN-06 2 108489009 108489009 G A RGPD4 Missense_Mutation p.A1517T 0.12 tolerated(0.99) benign(0.002) TCGA-EE-A2GN-06 2 111881335 111881335 C T BCL2L11 Missense_Mutation p.P5S 0.49 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-EE-A2GN-06 2 111881336 111881336 C T BCL2L11 Missense_Mutation p.P5L 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GN-06 2 113587996 113587996 C T IL1B Missense_Mutation p.G251E 0.59 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GN-06 2 113789328 113789328 G A IL36B 5'UTR 0.43 TCGA-EE-A2GN-06 2 128627105 128627105 C T AMMECR1L Missense_Mutation p.G216E 0.40 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GN-06 2 135745452 135745452 C T MAP3K19 Silent p.L330L 0.57 TCGA-EE-A2GN-06 2 141777653 141777653 C T LRP1B Missense_Mutation p.G603D 0.70 probably_damaging(0.982) TCGA-EE-A2GN-06 2 160289424 160289424 G A BAZ2B Missense_Mutation p.H582Y 0.28 benign(0.152) TCGA-EE-A2GN-06 2 160289425 160289425 G A BAZ2B Silent p.S581S 0.26 TCGA-EE-A2GN-06 2 160708726 160708726 G A LY75-CD302 Missense_Mutation p.P957S 0.52 tolerated(0.55) probably_damaging(0.986) TCGA-EE-A2GN-06 2 167162345 167162345 G A SCN9A Missense_Mutation p.R185C 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 2 167263091 167263091 G A SCN7A Missense_Mutation p.L1350F 0.19 deleterious(0) benign(0.358) TCGA-EE-A2GN-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.71 benign(0.002) TCGA-EE-A2GN-06 2 179458812 179458812 C T TTN Silent p.K19436K 0.53 TCGA-EE-A2GN-06 2 179539817 179539817 C T TTN Missense_Mutation p.E11521K 0.24 TCGA-EE-A2GN-06 2 182543592 182543592 C T NEUROD1 5'UTR 0.54 TCGA-EE-A2GN-06 2 186672961 186672961 G A FSIP2 Missense_Mutation p.E6399K 0.27 probably_damaging(0.998) TCGA-EE-A2GN-06 2 187703747 187703747 C T ZSWIM2 Missense_Mutation p.D145N 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 2 197086952 197086952 C T HECW2 Missense_Mutation p.E1377K 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GN-06 2 197654673 197654673 T A GTF3C3 Missense_Mutation p.E219D 0.30 tolerated(0.1) benign(0.33) TCGA-EE-A2GN-06 2 215279272 215279272 C T VWC2L Missense_Mutation p.H119Y 0.59 deleterious(0.01) benign(0.275) TCGA-EE-A2GN-06 2 219289047 219289047 C T VIL1 Silent p.F41F 0.30 TCGA-EE-A2GN-06 2 219530920 219530920 G A RNF25 Missense_Mutation p.P131S 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GN-06 2 220088413 220088413 G A ATG9A Missense_Mutation p.A498V 0.49 deleterious(0) possibly_damaging(0.527) TCGA-EE-A2GN-06 2 220337662 220337662 C T SPEG Nonsense_Mutation p.Q1331* 0.39 TCGA-EE-A2GN-06 2 220355507 220355507 G A SPEG Missense_Mutation p.G3072S 0.24 possibly_damaging(0.7) TCGA-EE-A2GN-06 2 220355508 220355508 G A SPEG Missense_Mutation p.G3072D 0.26 probably_damaging(0.918) TCGA-EE-A2GN-06 2 228147222 228147222 G A COL4A3 Missense_Mutation p.G877E 0.50 unknown(0) TCGA-EE-A2GN-06 2 228783561 228783561 G A DAW1 Missense_Mutation p.E347K 0.50 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GN-06 2 230911218 230911218 G A SLC16A14 Silent p.L208L 0.26 TCGA-EE-A2GN-06 2 232018339 232018339 C T PSMD1 Missense_Mutation p.A726V 0.36 deleterious(0) benign(0.334) TCGA-EE-A2GN-06 2 232137678 232137678 C T ARMC9 Silent p.Y407Y 0.58 TCGA-EE-A2GN-06 2 234591029 234591029 C T UGT1A7 Missense_Mutation p.P149L 0.60 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 2 238449075 238449075 A G MLPH Missense_Mutation p.S397G 0.58 tolerated(0.05) benign(0.335) TCGA-EE-A2GN-06 2 241513566 241513566 C T RNPEPL1 Silent p.I94I 0.15 TCGA-EE-A2GN-06 2 24239723 24239723 G A MFSD2B Missense_Mutation p.G119D 0.68 tolerated(0.13) probably_damaging(0.988) TCGA-EE-A2GN-06 2 242707157 242707157 G A D2HGDH Missense_Mutation p.E447K 0.24 tolerated(0.42) benign(0.026) TCGA-EE-A2GN-06 2 242755715 242755715 C T NEU4 Missense_Mutation p.L25F 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GN-06 2 27684212 27684212 C T IFT172 Missense_Mutation p.R789Q 0.53 tolerated(0.63) benign(0.005) TCGA-EE-A2GN-06 2 29092696 29092696 G A TRMT61B Missense_Mutation p.P150S 0.53 deleterious(0.04) benign(0.268) TCGA-EE-A2GN-06 2 32800257 32800257 G A BIRC6 Silent p.R4393R 0.35 TCGA-EE-A2GN-06 2 46986148 46986148 C G SOCS5 Missense_Mutation p.S160C 0.59 deleterious(0) possibly_damaging(0.533) TCGA-EE-A2GN-06 2 70130361 70130361 C T SNRNP27 Nonsense_Mutation p.Q133* 0.28 TCGA-EE-A2GN-06 2 70933406 70933406 G A ADD2 Silent p.F45F 0.69 TCGA-EE-A2GN-06 2 74042329 74042329 C T C2orf78 Missense_Mutation p.P327S 0.60 tolerated(0.15) possibly_damaging(0.737) TCGA-EE-A2GN-06 2 74650500 74650500 G A WDR54 Missense_Mutation p.D114N 0.62 tolerated(0.09) benign(0.027) TCGA-EE-A2GN-06 2 84518434 84518434 C T FUNDC2P2 RNA 0.72 TCGA-EE-A2GN-06 2 97749751 97749751 C T FAHD2B Silent p.G272G 0.68 TCGA-EE-A2GN-06 3 125824752 125824752 G A ALDH1L1 Silent p.L834L 0.60 TCGA-EE-A2GN-06 3 126220114 126220114 C T UROC1 Silent p.R364R 0.53 TCGA-EE-A2GN-06 3 12632392 12632392 C T RAF1 Silent p.E425E 0.20 TCGA-EE-A2GN-06 3 152174058 152174058 C T MBNL1 Missense_Mutation p.P340S 0.79 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GN-06 3 161221166 161221166 G A OTOL1 Silent p.G290G 0.62 TCGA-EE-A2GN-06 3 167745580 167745580 G A GOLIM4 Missense_Mutation p.P520L 0.24 tolerated(0.22) benign(0.007) TCGA-EE-A2GN-06 3 169637367 169637367 G A SAMD7 Silent p.V27V 0.50 TCGA-EE-A2GN-06 3 169656259 169656259 C T SAMD7 Missense_Mutation p.P436S 0.25 tolerated(0.51) benign(0.352) TCGA-EE-A2GN-06 3 178742978 178742978 G A ZMAT3 Missense_Mutation p.P233S 0.76 tolerated(0.17) probably_damaging(0.934) TCGA-EE-A2GN-06 3 183014915 183014915 G A MCF2L2 Missense_Mutation p.S449F 0.46 deleterious(0.01) possibly_damaging(0.518) TCGA-EE-A2GN-06 3 184035254 184035254 C T EIF4G1 Missense_Mutation p.A105V 0.50 tolerated(0.65) probably_damaging(0.97) TCGA-EE-A2GN-06 3 184035255 184035255 C T EIF4G1 Silent p.A105A 0.50 TCGA-EE-A2GN-06 3 186395741 186395741 A G HRG 3'UTR 0.64 TCGA-EE-A2GN-06 3 21467001 21467001 C T ZNF385D Missense_Mutation p.E279K 0.52 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GN-06 3 32811394 32811394 C T CNOT10 Missense_Mutation p.H734Y 0.52 tolerated(0.1) possibly_damaging(0.622) TCGA-EE-A2GN-06 3 38135151 38135151 G A DLEC1 Silent p.Q604Q 0.60 TCGA-EE-A2GN-06 3 38645454 38645454 C T SCN5A Missense_Mutation p.E547K 0.66 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A2GN-06 3 38936362 38936362 G A SCN11A Nonsense_Mutation p.Q833* 0.35 TCGA-EE-A2GN-06 3 39425195 39425195 G A SLC25A38 5'UTR 0.21 TCGA-EE-A2GN-06 3 44685004 44685005 GT - ZNF197 Frame_Shift_Del p.C795Wfs*24 0.24 TCGA-EE-A2GN-06 3 44700466 44700466 G A ZNF35 Missense_Mutation p.S204N 0.60 tolerated(0.4) benign(0.002) TCGA-EE-A2GN-06 3 48448229 48448229 C T PLXNB1 Splice_Site p.X2076_splice 0.79 TCGA-EE-A2GN-06 3 48448230 48448230 C T PLXNB1 Nonsense_Mutation p.W2076* 0.79 TCGA-EE-A2GN-06 3 48626333 48626333 C T COL7A1 Missense_Mutation p.A804T 0.71 unknown(0) TCGA-EE-A2GN-06 3 49924951 49924951 C T MST1R Missense_Mutation p.R1331Q 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 3 51370636 51370636 C T DOCK3 Missense_Mutation p.S1188F 0.58 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 3 66430815 66430815 C A LRIG1 Missense_Mutation p.A1052S 0.45 tolerated_low_confidence(0.08) benign(0.007) TCGA-EE-A2GN-06 3 7620516 7620516 C T GRM7 Silent p.I641I 0.35 TCGA-EE-A2GN-06 3 97439161 97439161 C T EPHA6 Silent p.F947F 0.53 TCGA-EE-A2GN-06 3 9760195 9760195 G A CPNE9 Missense_Mutation p.E384K 0.56 deleterious(0.01) possibly_damaging(0.542) TCGA-EE-A2GN-06 3 9796439 9796439 G A OGG1 Missense_Mutation p.R206H 0.09 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2GN-06 4 10099452 10099453 TT - WDR1 Frame_Shift_Del p.K147Sfs*21 0.19 TCGA-EE-A2GN-06 4 114279687 114279687 C T ANK2 Missense_Mutation p.P3305S 0.47 benign(0.053) TCGA-EE-A2GN-06 4 119948321 119948321 G A SYNPO2 Missense_Mutation p.R266K 0.32 tolerated(1) benign(0.002) TCGA-EE-A2GN-06 4 123230600 123230600 G A KIAA1109 Silent p.G3411G 0.35 TCGA-EE-A2GN-06 4 123230601 123230601 G A KIAA1109 Missense_Mutation p.D3412N 0.37 probably_damaging(0.934) TCGA-EE-A2GN-06 4 123664480 123664480 C T BBS12 Missense_Mutation p.P478L 0.52 deleterious(0.03) possibly_damaging(0.879) TCGA-EE-A2GN-06 4 130032905 130032905 C T C4orf33 Missense_Mutation p.P187S 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GN-06 4 130032906 130032906 C T C4orf33 Missense_Mutation p.P187L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 4 159790132 159790132 C T FNIP2 Missense_Mutation p.R782W 0.40 tolerated(0.21) possibly_damaging(0.54) TCGA-EE-A2GN-06 4 162421234 162421234 C T FSTL5 Silent p.V464V 0.26 TCGA-EE-A2GN-06 4 177142371 177142371 C T ASB5 Missense_Mutation p.G202E 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 4 187455461 187455461 G A MTNR1A Silent p.L145L 0.28 TCGA-EE-A2GN-06 4 26744181 26744181 C T TBC1D19 Missense_Mutation p.P427S 0.30 deleterious(0.03) benign(0.393) TCGA-EE-A2GN-06 4 27010621 27010621 C T STIM2 Missense_Mutation p.P504S 0.39 tolerated(0.24) benign(0.002) TCGA-EE-A2GN-06 4 3129048 3129048 C T HTT Missense_Mutation p.P487L 0.39 benign(0.003) TCGA-EE-A2GN-06 4 56225634 56225634 C T SRD5A3 Missense_Mutation p.L115F 0.46 tolerated(0.09) possibly_damaging(0.533) TCGA-EE-A2GN-06 4 56884021 56884021 A C CEP135 Silent p.R1004R 0.32 TCGA-EE-A2GN-06 4 5690978 5690978 G A EVC2 Silent p.L204L 0.51 TCGA-EE-A2GN-06 4 6588780 6588780 T A MAN2B2 Missense_Mutation p.V150D 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GN-06 4 66467820 66467820 G A EPHA5 Missense_Mutation p.T150I 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GN-06 4 69682355 69682355 C T UGT2B10 Silent p.F206F 0.24 TCGA-EE-A2GN-06 4 70146802 70146802 C T UGT2B28 Missense_Mutation p.P195L 0.35 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2GN-06 4 73968111 73968111 C T ANKRD17 Missense_Mutation p.E1519K 0.39 benign(0.246) TCGA-EE-A2GN-06 4 88035744 88035744 C T AFF1 Missense_Mutation p.P587S 0.76 tolerated(0.08) unknown(0) TCGA-EE-A2GN-06 5 120022371 120022371 G A PRR16 Silent p.T271T 0.48 TCGA-EE-A2GN-06 5 121739548 121739548 G A SNCAIP Missense_Mutation p.E40K 0.48 deleterious(0.01) benign(0.359) TCGA-EE-A2GN-06 5 131398406 131398406 G A IL3 Silent p.R127R 0.49 TCGA-EE-A2GN-06 5 135207568 135207568 C T SLC25A48 Intron 0.35 TCGA-EE-A2GN-06 5 140056385 140056385 C T HARS Missense_Mutation p.E350K 0.32 tolerated(0.07) benign(0.049) TCGA-EE-A2GN-06 5 140174643 140174643 C T PCDHA2 Missense_Mutation p.R32C 0.32 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-EE-A2GN-06 5 140475705 140475705 C T PCDHB2 Missense_Mutation p.S444F 0.34 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A2GN-06 5 140553523 140553523 G A PCDHB7 Silent p.R369R 0.34 TCGA-EE-A2GN-06 5 140741831 140741831 C A PCDHGB2 Missense_Mutation p.A710E 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2GN-06 5 140866970 140866970 C A PCDHGC4 Missense_Mutation p.P744T 0.33 tolerated(0.33) benign(0.004) TCGA-EE-A2GN-06 5 147475428 147475428 G A SPINK5 Missense_Mutation p.G281E 0.52 tolerated(0.36) benign(0.001) TCGA-EE-A2GN-06 5 150908755 150908755 C T FAT2 Missense_Mutation p.G3337D 0.39 probably_damaging(1) TCGA-EE-A2GN-06 5 168233537 168233537 G A SLIT3 Silent p.P283P 0.42 TCGA-EE-A2GN-06 5 169535099 169535099 C T FOXI1 Silent p.F207F 0.47 TCGA-EE-A2GN-06 5 176053500 176053500 C T SNCB Missense_Mutation p.E61K 0.60 deleterious(0) possibly_damaging(0.72) TCGA-EE-A2GN-06 5 176301449 176301449 G T UNC5A Missense_Mutation p.E420D 0.46 tolerated(0.5) benign(0.002) TCGA-EE-A2GN-06 5 176308797 176308797 G A HK3 Silent p.I763I 0.40 TCGA-EE-A2GN-06 5 176519776 176519776 G A FGFR4 Missense_Mutation p.V350M 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 5 176895126 176895126 A G DBN1 Missense_Mutation p.Y82H 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 5 178309840 178309840 G A ZNF354B Silent p.E129E 0.44 TCGA-EE-A2GN-06 5 178413290 178413290 G A GRM6 Silent p.L655L 0.58 TCGA-EE-A2GN-06 5 178418561 178418561 C T GRM6 Splice_Site p.X241_splice 0.43 TCGA-EE-A2GN-06 5 31983460 31983460 C T PDZD2 Missense_Mutation p.P226S 0.30 tolerated(0.63) benign(0.006) TCGA-EE-A2GN-06 5 37341336 37341336 A G NUP155 Silent p.L368L 0.59 TCGA-EE-A2GN-06 5 41048429 41048429 C T MROH2B Missense_Mutation p.E561K 0.21 deleterious(0) possibly_damaging(0.8) TCGA-EE-A2GN-06 5 50090740 50090740 C T PARP8 Missense_Mutation p.S306F 0.46 tolerated_low_confidence(0.19) benign(0.004) TCGA-EE-A2GN-06 5 54320538 54320538 C T GZMK Missense_Mutation p.P39S 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A2GN-06 5 89938839 89938839 G A GPR98 Missense_Mutation p.R845K 0.34 benign(0.364) TCGA-EE-A2GN-06 5 90016856 90016856 C T GPR98 Missense_Mutation p.S3243F 0.44 possibly_damaging(0.831) TCGA-EE-A2GN-06 5 96329582 96329582 C - LNPEP Frame_Shift_Del p.R439Efs*20 0.10 TCGA-EE-A2GN-06 5 98194037 98194037 G A CHD1 Missense_Mutation p.S1545F 0.47 tolerated(0.17) benign(0.374) TCGA-EE-A2GN-06 6 15501623 15501623 C T JARID2 Missense_Mutation p.H811Y 0.40 tolerated(0.09) benign(0.001) TCGA-EE-A2GN-06 6 161071386 161071386 C T LPA Missense_Mutation p.E65K 0.80 tolerated(0.31) possibly_damaging(0.851) TCGA-EE-A2GN-06 6 17764900 17764900 G A KIF13A Missense_Mutation p.S1620L 0.37 tolerated_low_confidence(0.08) benign(0.022) TCGA-EE-A2GN-06 6 29695792 29695792 C A HLA-F 3'Flank 0.38 TCGA-EE-A2GN-06 6 30131427 30131427 G A TRIM15 5'UTR 0.33 TCGA-EE-A2GN-06 6 31687075 31687075 A T LY6G6C Missense_Mutation p.V59D 0.49 deleterious(0) possibly_damaging(0.884) TCGA-EE-A2GN-06 6 31687076 31687076 C T LY6G6C Missense_Mutation p.V59I 0.49 tolerated(0.33) benign(0.266) TCGA-EE-A2GN-06 6 31997551 31997551 C T C4B Silent p.F1295F 0.37 TCGA-EE-A2GN-06 6 32975148 32975148 C T HLA-DOA Missense_Mutation p.D185N 0.40 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GN-06 6 33137244 33137244 C T COL11A2 Silent p.E1152E 0.31 TCGA-EE-A2GN-06 6 35765063 35765063 C T CLPS Translation_Start_Site p.M1? 0.29 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2GN-06 6 42613219 42613219 C T UBR2 Missense_Mutation p.P767L 0.35 tolerated(0.1) benign(0.242) TCGA-EE-A2GN-06 6 43590398 43590398 C T GTPBP2 Missense_Mutation p.G480E 0.44 tolerated(0.61) possibly_damaging(0.504) TCGA-EE-A2GN-06 6 43590399 43590399 C T GTPBP2 Missense_Mutation p.G480R 0.45 tolerated(0.3) possibly_damaging(0.716) TCGA-EE-A2GN-06 6 44310885 44310885 C T SPATS1 Missense_Mutation p.S18F 0.47 tolerated_low_confidence(0.37) benign(0.009) TCGA-EE-A2GN-06 6 52344579 52344579 C A EFHC1 Missense_Mutation p.A545E 0.36 tolerated(1) benign(0.002) TCGA-EE-A2GN-06 6 52344580 52344580 A C EFHC1 Silent p.A545A 0.36 TCGA-EE-A2GN-06 6 5431349 5431349 G A FARS2 Missense_Mutation p.G283E 0.50 tolerated(0.05) benign(0.221) TCGA-EE-A2GN-06 6 56846633 56846633 G A BEND6 Missense_Mutation p.E9K 0.40 deleterious_low_confidence(0.01) benign(0.017) TCGA-EE-A2GN-06 6 70859924 70859924 C T COL19A1 Missense_Mutation p.P675L 0.47 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GN-06 6 76660470 76660470 G A IMPG1 Missense_Mutation p.H545Y 0.44 tolerated(0.69) benign(0.014) TCGA-EE-A2GN-06 6 86281875 86281875 C T SNX14 Missense_Mutation p.V133I 0.35 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2GN-06 6 86281876 86281876 C T SNX14 Silent p.K132K 0.35 TCGA-EE-A2GN-06 6 88318858 88318858 C T ORC3 Silent p.S208S 0.46 TCGA-EE-A2GN-06 6 90305674 90305674 C T ANKRD6 Missense_Mutation p.H54Y 0.46 deleterious(0) probably_damaging(0.959) TCGA-EE-A2GN-06 7 135292009 135292009 C A NUP205 Missense_Mutation p.P1029T 0.13 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2GN-06 7 141955395 141955395 G A PRSS58 Missense_Mutation p.H47Y 0.81 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2GN-06 7 142232070 142232070 G A TRBV10-1 5'UTR 0.82 TCGA-EE-A2GN-06 7 14378184 14378184 C T DGKB Missense_Mutation p.R694K 0.23 tolerated(0.87) benign(0.021) TCGA-EE-A2GN-06 7 21678670 21678670 C T DNAH11 Missense_Mutation p.A1649V 0.20 benign(0.197) TCGA-EE-A2GN-06 7 22196451 22196451 C T RAPGEF5 Missense_Mutation p.G385E 0.42 tolerated(0.34) benign(0.355) TCGA-EE-A2GN-06 7 23682705 23682705 A T CCDC126 Nonsense_Mutation p.R132* 0.15 TCGA-EE-A2GN-06 7 29727054 29727054 C T DPY19L2P3 Intron 0.49 TCGA-EE-A2GN-06 7 33014933 33014933 G A FKBP9 Silent p.V169V 0.18 TCGA-EE-A2GN-06 7 36552758 36552758 C T AOAH 3'UTR 0.37 TCGA-EE-A2GN-06 7 39243858 39243858 C T POU6F2 Missense_Mutation p.S72L 0.50 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-EE-A2GN-06 7 44152505 44152505 G A AEBP1 Missense_Mutation p.G856R 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GN-06 7 48269475 48269475 C T ABCA13 Missense_Mutation p.S229F 0.53 benign(0.01) TCGA-EE-A2GN-06 7 51111375 51111375 C T COBL Missense_Mutation p.G371R 0.49 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A2GN-06 7 94953810 94953810 C T PON1 5'UTR 0.82 TCGA-EE-A2GN-06 8 103279190 103279190 G A UBR5 Silent p.S2469S 0.28 TCGA-EE-A2GN-06 8 105511743 105511743 G A LRP12 Nonsense_Mutation p.Q93* 0.50 TCGA-EE-A2GN-06 8 10557879 10557879 C T C8orf74 Silent p.A261A 0.26 TCGA-EE-A2GN-06 8 124250170 124250170 C T C8orf76 Silent p.Q75Q 0.21 TCGA-EE-A2GN-06 8 139144788 139144788 C T FAM135B 3'UTR 0.64 TCGA-EE-A2GN-06 8 144998070 144998070 C T PLEC Silent p.E2146E 0.61 TCGA-EE-A2GN-06 8 144998603 144998603 C T PLEC Missense_Mutation p.E1969K 0.62 unknown(0) TCGA-EE-A2GN-06 8 19316153 19316153 C T CSGALNACT1 Missense_Mutation p.G212E 0.53 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GN-06 8 22011507 22011507 G A LGI3 Silent p.F156F 0.28 TCGA-EE-A2GN-06 8 24171031 24171031 G A ADAM28 Missense_Mutation p.D172N 0.73 tolerated(0.37) benign(0.009) TCGA-EE-A2GN-06 8 24810287 24810287 G A CTD-2168K21.2 5'Flank 0.68 TCGA-EE-A2GN-06 8 25340955 25340955 C T CDCA2 Missense_Mutation p.P358L 0.60 deleterious(0) possibly_damaging(0.602) TCGA-EE-A2GN-06 8 30550507 30550507 C T GSR Silent p.V287V 0.55 TCGA-EE-A2GN-06 8 30703654 30703654 G A TEX15 Silent p.S960S 0.58 TCGA-EE-A2GN-06 8 39468211 39468211 C T ADAM18 Missense_Mutation p.P170S 0.22 tolerated(0.4) benign(0.014) TCGA-EE-A2GN-06 8 40011117 40011117 C T C8orf4 Silent p.I22I 0.21 TCGA-EE-A2GN-06 8 41456738 41456738 T A AGPAT6 Missense_Mutation p.L27H 0.60 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GN-06 8 57228681 57228681 C T SDR16C5 Missense_Mutation p.G76R 0.34 deleterious(0.01) benign(0.056) TCGA-EE-A2GN-06 8 61750375 61750375 G C CHD7 Missense_Mutation p.R1445T 0.19 probably_damaging(0.983) TCGA-EE-A2GN-06 8 68864761 68864761 C T PREX2 Silent p.F44F 0.36 TCGA-EE-A2GN-06 8 87588076 87588076 C T CNGB3 Missense_Mutation p.E796K 0.50 deleterious(0) probably_damaging(0.949) TCGA-EE-A2GN-06 8 92364064 92364064 C T SLC26A7 Silent p.F389F 0.60 TCGA-EE-A2GN-06 8 95502190 95502190 G A KIAA1429 Missense_Mutation p.P1754L 0.51 deleterious(0.02) possibly_damaging(0.795) TCGA-EE-A2GN-06 9 101748303 101748303 C T COL15A1 Missense_Mutation p.P186L 0.83 tolerated(0.84) benign(0.001) TCGA-EE-A2GN-06 9 104449164 104449164 C T GRIN3A Missense_Mutation p.E340K 0.84 tolerated(0.08) benign(0.022) TCGA-EE-A2GN-06 9 123667328 123667328 G A TRAF1 Silent p.F407F 0.93 TCGA-EE-A2GN-06 9 125852639 125852639 T A RABGAP1 Missense_Mutation p.I868N 0.79 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A2GN-06 9 125852642 125852642 C T RABGAP1 Missense_Mutation p.A869V 0.81 tolerated(0.14) probably_damaging(0.978) TCGA-EE-A2GN-06 9 131048271 131048271 A G SWI5 Missense_Mutation p.N201S 0.84 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2GN-06 9 131329157 131329157 C T SPTAN1 Silent p.F46F 0.90 TCGA-EE-A2GN-06 9 131329158 131329158 C T SPTAN1 Nonsense_Mutation p.Q47* 0.90 TCGA-EE-A2GN-06 9 35093548 35093548 G A PIGO Missense_Mutation p.T270I 0.82 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GN-06 9 35093549 35093549 T A PIGO Missense_Mutation p.T270S 0.75 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2GN-06 9 80646121 80646121 G A GNAQ Silent p.L11L 0.57 TCGA-EE-A2GN-06 9 98231241 98231241 G A PTCH1 Missense_Mutation p.P681L 0.85 deleterious(0) probably_damaging(0.913) TCGA-EE-A2GN-06 X 105011256 105011256 G A IL1RAPL2 Missense_Mutation p.E555K 0.86 deleterious(0.05) probably_damaging(0.994) TCGA-EE-A2GN-06 X 107408127 107408127 G A COL4A6 Missense_Mutation p.P1318L 0.79 benign(0.18) TCGA-EE-A2GN-06 X 107408128 107408128 G T COL4A6 Missense_Mutation p.P1318T 0.72 benign(0.089) TCGA-EE-A2GN-06 X 138680593 138680593 C T MCF2 Missense_Mutation p.R710Q 0.78 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GN-06 X 151935815 151935815 G A MAGEA3 Missense_Mutation p.H118Y 0.84 deleterious(0.01) possibly_damaging(0.679) TCGA-EE-A2GN-06 X 154158047 154158047 G A F8 Missense_Mutation p.P1340S 0.96 tolerated(0.68) benign(0.01) TCGA-EE-A2GN-06 X 1718147 1718147 G A AKAP17A Missense_Mutation p.R325K 0.45 tolerated(0.17) unknown(0) TCGA-EE-A2GN-06 X 41202597 41202597 C T DDX3X Silent p.A224A 0.93 TCGA-EE-A2GN-06 X 41202598 41202598 C T DDX3X Nonsense_Mutation p.Q225* 0.94 TCGA-EE-A2GN-06 X 73046495 73046495 C T XIST RNA 0.86 TCGA-EE-A2GN-06 X 77912605 77912605 C T ZCCHC5 Missense_Mutation p.R438H 0.86 tolerated(0.34) benign(0.001) TCGA-EE-A2GN-06 X 7868853 7868853 G A PNPLA4 Silent p.S212S 0.78 TCGA-EE-A2GO-06 10 101611279 101611279 G A ABCC2 Missense_Mutation p.G1510E 0.91 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 10 102684190 102684190 C T FAM178A Missense_Mutation p.R478C 0.87 tolerated(0.12) possibly_damaging(0.707) TCGA-EE-A2GO-06 10 102896665 102896665 G A TLX1 Missense_Mutation p.E330K 0.40 deleterious_low_confidence(0) benign(0.15) TCGA-EE-A2GO-06 10 103292777 103292777 C T BTRC Silent p.L349L 0.39 TCGA-EE-A2GO-06 10 103292778 103292778 C T BTRC Nonsense_Mutation p.Q350* 0.38 TCGA-EE-A2GO-06 10 104142018 104142018 C T GBF1 Silent p.I1835I 0.43 TCGA-EE-A2GO-06 10 1065637 1065637 C T IDI2 Silent p.T168T 0.45 TCGA-EE-A2GO-06 10 107006989 107006989 C T SORCS3 Missense_Mutation p.S1002F 0.77 tolerated(0.08) probably_damaging(0.982) TCGA-EE-A2GO-06 10 112838505 112838505 C T ADRA2A Missense_Mutation p.P251S 0.90 tolerated(0.12) benign(0.04) TCGA-EE-A2GO-06 10 114154853 114154853 G A ACSL5 Missense_Mutation p.G106E 0.50 tolerated(1) possibly_damaging(0.638) TCGA-EE-A2GO-06 10 116067597 116067597 G A AFAP1L2 Silent p.L347L 0.93 TCGA-EE-A2GO-06 10 116067598 116067598 T A AFAP1L2 Silent p.S346S 0.94 TCGA-EE-A2GO-06 10 117075177 117075177 G A ATRNL1 Missense_Mutation p.E990K 0.32 tolerated_low_confidence(0.09) possibly_damaging(0.699) TCGA-EE-A2GO-06 10 117093905 117093905 C T ATRNL1 Missense_Mutation p.P1051S 0.56 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GO-06 10 120818836 120818836 G A EIF3A Missense_Mutation p.P506L 0.91 tolerated(0.05) unknown(0) TCGA-EE-A2GO-06 10 120818837 120818837 G A EIF3A Missense_Mutation p.P506S 0.91 tolerated(0.12) unknown(0) TCGA-EE-A2GO-06 10 123244938 123244938 C T FGFR2 Missense_Mutation p.M723I 0.41 deleterious(0) possibly_damaging(0.59) TCGA-EE-A2GO-06 10 124402885 124402885 C T DMBT1 Missense_Mutation p.P2405S 0.90 tolerated_low_confidence(0.17) possibly_damaging(0.487) TCGA-EE-A2GO-06 10 124600703 124600703 G A CUZD1 Missense_Mutation p.S75F 0.58 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GO-06 10 127726869 127726869 G A ADAM12 Missense_Mutation p.H767Y 0.76 tolerated(0.46) benign(0.003) TCGA-EE-A2GO-06 10 134218812 134218812 C T PWWP2B Missense_Mutation p.P270S 0.85 tolerated(0.25) probably_damaging(1) TCGA-EE-A2GO-06 10 135053763 135053763 G A VENTX Missense_Mutation p.G244R 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GO-06 10 135085327 135085327 G A ADAM8 Silent p.I363I 0.39 TCGA-EE-A2GO-06 10 15107724 15107724 G A OLAH Missense_Mutation p.A235T 0.86 deleterious(0.03) possibly_damaging(0.814) TCGA-EE-A2GO-06 10 18828513 18828513 G A CACNB2 Missense_Mutation p.E615K 0.61 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-EE-A2GO-06 10 18957538 18957538 C T ARL5B Missense_Mutation p.L63F 0.46 tolerated(0.72) benign(0.181) TCGA-EE-A2GO-06 10 20432314 20432314 C T PLXDC2 Missense_Mutation p.S211F 0.89 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 10 24822053 24822053 G A KIAA1217 Missense_Mutation p.A1101T 0.48 tolerated(0.76) benign(0.005) TCGA-EE-A2GO-06 10 27537985 27537985 C T RP11-85G18.6 Intron 0.92 TCGA-EE-A2GO-06 10 28149569 28149569 C T ARMC4 Silent p.E1002E 0.86 TCGA-EE-A2GO-06 10 32096682 32096682 T C ARHGAP12 Silent p.P815P 0.50 TCGA-EE-A2GO-06 10 33201026 33201026 T A ITGB1 Missense_Mutation p.H499L 0.75 tolerated(0.72) benign(0) TCGA-EE-A2GO-06 10 37433955 37433955 G A ANKRD30A Missense_Mutation p.E420K 0.43 tolerated(0.11) possibly_damaging(0.636) TCGA-EE-A2GO-06 10 37486364 37486364 C T ANKRD30A Missense_Mutation p.P835L 0.83 tolerated(0.79) benign(0.283) TCGA-EE-A2GO-06 10 45430327 45430327 G A TMEM72 Silent p.K191K 0.43 TCGA-EE-A2GO-06 10 45799154 45799154 G A OR13A1 Silent p.I239I 0.93 TCGA-EE-A2GO-06 10 46122504 46122504 G A ZFAND4 Missense_Mutation p.P256L 0.33 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2GO-06 10 48413860 48413860 G A GDF2 Silent p.F336F 0.88 TCGA-EE-A2GO-06 10 49654619 49654619 A G ARHGAP22 Silent p.L654L 0.25 TCGA-EE-A2GO-06 10 50870726 50870726 G A CHAT Silent p.L625L 0.90 TCGA-EE-A2GO-06 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.93 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 10 54528094 54528094 G A MBL2 Silent p.L184L 0.47 TCGA-EE-A2GO-06 10 61829136 61829136 G A ANK3 Silent p.L3835L 0.41 TCGA-EE-A2GO-06 10 61833570 61833570 C T ANK3 Missense_Mutation p.E2357K 0.53 probably_damaging(0.956) TCGA-EE-A2GO-06 10 61833994 61833994 C T ANK3 Silent p.K2215K 0.43 TCGA-EE-A2GO-06 10 63845526 63845528 CTC AT ARID5B Frame_Shift_Del p.P422Hfs*57 0.42 TCGA-EE-A2GO-06 10 63851009 63851009 C T ARID5B Missense_Mutation p.P596L 0.93 deleterious(0.03) benign(0.014) TCGA-EE-A2GO-06 10 70143670 70143670 A G RUFY2 Missense_Mutation p.V310A 0.95 tolerated(0.38) benign(0.008) TCGA-EE-A2GO-06 10 70644837 70644837 C T STOX1 Nonsense_Mutation p.R429* 0.92 TCGA-EE-A2GO-06 10 72195499 72195499 G A NODAL Missense_Mutation p.T145I 0.40 tolerated(0.06) probably_damaging(0.941) TCGA-EE-A2GO-06 10 72358523 72358523 G A PRF1 Silent p.I318I 0.45 TCGA-EE-A2GO-06 10 73057762 73057762 C T UNC5B Missense_Mutation p.R863C 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 10 73122298 73122298 C T SLC29A3 Missense_Mutation p.S454F 0.43 deleterious(0) probably_damaging(0.928) TCGA-EE-A2GO-06 10 73765597 73765597 C T CHST3 5'UTR 0.96 TCGA-EE-A2GO-06 10 7788604 7788604 G A ITIH2 Missense_Mutation p.G877E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 10 79565488 79565488 G A DLG5 Missense_Mutation p.S1700F 0.46 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GO-06 10 79781316 79781316 A T POLR3A Silent p.T391T 0.50 TCGA-EE-A2GO-06 10 81051954 81051954 C T ZMIZ1 Silent p.I266I 0.88 TCGA-EE-A2GO-06 10 85971426 85971426 C T CDHR1 Missense_Mutation p.P503L 0.40 tolerated(0.41) benign(0.013) TCGA-EE-A2GO-06 10 85971427 85971427 C T CDHR1 Silent p.P503P 0.40 TCGA-EE-A2GO-06 10 85992033 85992033 C T LRIT1 Missense_Mutation p.E508K 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GO-06 10 92508974 92508974 G A HTR7 Missense_Mutation p.S306L 0.50 tolerated(0.08) possibly_damaging(0.842) TCGA-EE-A2GO-06 10 95347163 95347163 G A FFAR4 Missense_Mutation p.D311N 0.90 tolerated(0.17) benign(0.02) TCGA-EE-A2GO-06 10 95385364 95385364 A T PDE6C Silent p.G299G 0.95 TCGA-EE-A2GO-06 10 95718530 95718530 C T PIPSL RNA 0.38 TCGA-EE-A2GO-06 10 96058176 96058176 T G PLCE1 Silent p.S1736S 0.50 TCGA-EE-A2GO-06 10 96058361 96058361 A G PLCE1 Missense_Mutation p.N1798S 0.93 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 10 96701746 96701746 C T CYP2C9 Silent p.F100F 0.56 TCGA-EE-A2GO-06 10 96802818 96802818 C T CYP2C8 Silent p.E326E 0.47 TCGA-EE-A2GO-06 10 98080482 98080482 C T DNTT Silent p.I205I 0.86 TCGA-EE-A2GO-06 11 101323741 101323741 C T TRPC6 Missense_Mutation p.R914K 0.20 tolerated(0.11) probably_damaging(0.958) TCGA-EE-A2GO-06 11 101375483 101375483 G A TRPC6 Missense_Mutation p.R73C 0.66 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 11 1017368 1017368 G A MUC6 Silent p.S1811S 0.08 TCGA-EE-A2GO-06 11 102662173 102662173 C T MMP1 Missense_Mutation p.D363N 0.29 tolerated(0.37) benign(0.075) TCGA-EE-A2GO-06 11 102711287 102711287 G A MMP3 Silent p.G221G 0.26 TCGA-EE-A2GO-06 11 102819764 102819764 G A MMP13 Silent p.F347F 0.36 TCGA-EE-A2GO-06 11 102937231 102937231 G A DCUN1D5 Missense_Mutation p.S136L 0.53 tolerated(0.67) benign(0.005) TCGA-EE-A2GO-06 11 10649568 10649568 C T MRVI1 Silent p.L219L 0.21 TCGA-EE-A2GO-06 11 108332209 108332209 G A C11orf65 Silent p.F26F 0.53 TCGA-EE-A2GO-06 11 108381695 108381695 T A EXPH5 Silent p.A1513A 0.29 TCGA-EE-A2GO-06 11 108547830 108547830 C T DDX10 Missense_Mutation p.R133C 0.65 tolerated(0.22) possibly_damaging(0.793) TCGA-EE-A2GO-06 11 1096416 1096416 G A MUC2 Silent p.E2147E 0.18 TCGA-EE-A2GO-06 11 110450090 110450090 A T ARHGAP20 3'UTR 0.31 TCGA-EE-A2GO-06 11 111338293 111338293 C T BTG4 3'UTR 0.45 TCGA-EE-A2GO-06 11 111385558 111385558 G A C11orf88 Missense_Mutation p.E17K 0.39 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GO-06 11 111749912 111749912 C T FDXACB1 5'Flank 0.32 TCGA-EE-A2GO-06 11 113934214 113934214 C T ZBTB16 Silent p.H64H 0.38 TCGA-EE-A2GO-06 11 116661393 116661393 G A APOA5 Silent p.T184T 0.30 TCGA-EE-A2GO-06 11 116691667 116691667 G A APOA4 Silent p.S369S 0.28 TCGA-EE-A2GO-06 11 118071226 118071226 G A AMICA1 Silent p.L292L 0.19 TCGA-EE-A2GO-06 11 118210599 118210599 C T CD3D Silent p.L99L 0.17 TCGA-EE-A2GO-06 11 118514515 118514515 C T PHLDB1 Intron 0.29 TCGA-EE-A2GO-06 11 118769959 118769959 G A BCL9L Missense_Mutation p.S1222F 0.59 possibly_damaging(0.862) TCGA-EE-A2GO-06 11 120998804 120998804 C T TECTA Silent p.F706F 0.66 TCGA-EE-A2GO-06 11 121489516 121489516 G A SORL1 Missense_Mutation p.D1880N 0.34 deleterious(0.02) possibly_damaging(0.786) TCGA-EE-A2GO-06 11 1215746 1215746 T G MUC5AC RNA 0.16 TCGA-EE-A2GO-06 11 12315568 12315568 C T MICALCL Missense_Mutation p.S197F 0.60 tolerated(0.09) benign(0.03) TCGA-EE-A2GO-06 11 12315719 12315719 G A MICALCL Silent p.Q247Q 0.62 TCGA-EE-A2GO-06 11 123676125 123676125 C T OR6M1 Silent p.R311R 0.33 TCGA-EE-A2GO-06 11 12379943 12379943 G A MICALCL Missense_Mutation p.E669K 0.67 deleterious(0.04) possibly_damaging(0.768) TCGA-EE-A2GO-06 11 123810559 123810559 C T OR4D5 Missense_Mutation p.P79L 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 11 123909348 123909348 G A OR10G7 Missense_Mutation p.R121C 0.36 deleterious(0.01) possibly_damaging(0.889) TCGA-EE-A2GO-06 11 124310640 124310640 G A OR8B8 Silent p.I114I 0.15 TCGA-EE-A2GO-06 11 124413023 124413023 G A OR8B12 Silent p.F176F 0.26 TCGA-EE-A2GO-06 11 124440236 124440236 C T OR8A1 Missense_Mutation p.S91F 0.24 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GO-06 11 124619677 124619677 C T VSIG2 Silent p.G171G 0.30 TCGA-EE-A2GO-06 11 124740918 124740918 C T ROBO3 Nonsense_Mutation p.Q348* 0.22 TCGA-EE-A2GO-06 11 124743608 124743608 C T ROBO3 Missense_Mutation p.S545L 0.25 tolerated(0.48) benign(0.008) TCGA-EE-A2GO-06 11 124766102 124766102 G A ROBO4 Missense_Mutation p.S224F 0.25 deleterious(0.02) benign(0.009) TCGA-EE-A2GO-06 11 1272698 1272698 C T MUC5B Missense_Mutation p.S4863F 0.19 unknown(0) TCGA-EE-A2GO-06 11 1281225 1281225 C A MUC5B Missense_Mutation p.D5611E 0.72 unknown(0) TCGA-EE-A2GO-06 11 129306768 129306768 G A BARX2 Missense_Mutation p.E104K 0.30 tolerated(0.8) benign(0.002) TCGA-EE-A2GO-06 11 129321073 129321073 C T BARX2 Missense_Mutation p.R206C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 11 132016241 132016241 G A NTM Missense_Mutation p.G78E 0.65 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 11 14101552 14101552 C T SPON1 RNA 0.44 TCGA-EE-A2GO-06 11 16071320 16071320 C T SOX6 Silent p.L472L 0.26 TCGA-EE-A2GO-06 11 17332783 17332783 G A NUCB2 Missense_Mutation p.G238E 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 11 18267004 18267004 C T SAA2 Missense_Mutation p.D97N 0.26 tolerated(0.18) probably_damaging(0.961) TCGA-EE-A2GO-06 11 18451302 18451302 A G LDHC Missense_Mutation p.N88S 0.70 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GO-06 11 1862079 1862079 G A TNNI2 Missense_Mutation p.D73N 0.25 deleterious(0.04) benign(0.129) TCGA-EE-A2GO-06 11 18765681 18765681 C T PTPN5 Missense_Mutation p.E55K 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.601) TCGA-EE-A2GO-06 11 18955459 18955459 G A MRGPRX1 Silent p.L291L 0.21 TCGA-EE-A2GO-06 11 1977612 1977612 C T MRPL23 Missense_Mutation p.P142S 0.68 deleterious(0.05) benign(0.341) TCGA-EE-A2GO-06 11 1977613 1977613 C T MRPL23 Missense_Mutation p.P142L 0.68 tolerated(0.06) benign(0.019) TCGA-EE-A2GO-06 11 2186914 2186914 G A TH Missense_Mutation p.S426F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 11 22399010 22399010 T C SLC17A6 Silent p.V491V 0.26 TCGA-EE-A2GO-06 11 2444165 2444165 C T TRPM5 Silent p.G34G 0.50 TCGA-EE-A2GO-06 11 26663532 26663532 A T ANO3 Missense_Mutation p.Q744L 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GO-06 11 27016390 27016390 C T FIBIN Missense_Mutation p.S106F 0.36 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-EE-A2GO-06 11 2976993 2976993 G A NAP1L4 Missense_Mutation p.S299F 0.32 deleterious(0) possibly_damaging(0.646) TCGA-EE-A2GO-06 11 3047965 3047965 G A CARS Missense_Mutation p.S365F 0.63 tolerated(0.76) benign(0.004) TCGA-EE-A2GO-06 11 3249790 3249790 G A MRGPRE Silent p.I79I 0.28 TCGA-EE-A2GO-06 11 3249975 3249975 C T MRGPRE Missense_Mutation p.E18K 0.27 tolerated(0.12) benign(0.14) TCGA-EE-A2GO-06 11 33564529 33564529 C T KIAA1549L Silent p.L177L 0.60 TCGA-EE-A2GO-06 11 36484348 36484348 C T PRR5L 3'UTR 0.46 TCGA-EE-A2GO-06 11 36597162 36597162 G A RAG1 Missense_Mutation p.E770K 0.48 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-EE-A2GO-06 11 4103472 4103472 C T STIM1 Missense_Mutation p.A343V 0.34 tolerated(0.37) probably_damaging(0.913) TCGA-EE-A2GO-06 11 45274151 45274151 C T SYT13 Missense_Mutation p.E223K 0.25 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 11 45937061 45937061 G A PEX16 Missense_Mutation p.P140S 0.27 deleterious(0.01) possibly_damaging(0.729) TCGA-EE-A2GO-06 11 46341875 46341875 G A CREB3L1 Missense_Mutation p.S440N 0.23 tolerated(0.12) benign(0.005) TCGA-EE-A2GO-06 11 46772099 46772099 G A CKAP5 Silent p.G1841G 0.33 TCGA-EE-A2GO-06 11 4703796 4703796 C T OR51E2 Missense_Mutation p.R49K 0.22 tolerated(1) benign(0.004) TCGA-EE-A2GO-06 11 47804706 47804706 G A NUP160 Silent p.D1345D 0.69 TCGA-EE-A2GO-06 11 48239195 48239195 C T OR4B1 Silent p.P278P 0.24 TCGA-EE-A2GO-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.26 TCGA-EE-A2GO-06 11 4869964 4869964 G A OR51S1 Nonsense_Mutation p.R159* 0.38 TCGA-EE-A2GO-06 11 49830124 49830124 C T RP11-707M1.1 RNA 0.22 TCGA-EE-A2GO-06 11 50004035 50004035 C T OR4C12 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-EE-A2GO-06 11 5079937 5079937 T A OR52E2 Silent p.I307I 0.27 TCGA-EE-A2GO-06 11 5173014 5173014 G A OR52A1 Nonsense_Mutation p.Q196* 0.29 TCGA-EE-A2GO-06 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.33 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A2GO-06 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.66 deleterious(0.02) benign(0.046) TCGA-EE-A2GO-06 11 5372760 5372760 C T OR51B6 Missense_Mutation p.S8F 0.29 tolerated(0.05) benign(0.003) TCGA-EE-A2GO-06 11 5373327 5373327 C T OR51B6 Missense_Mutation p.P197L 0.71 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GO-06 11 5529428 5529428 C T UBQLN3 Missense_Mutation p.R454K 0.26 tolerated_low_confidence(0.12) benign(0.007) TCGA-EE-A2GO-06 11 5530321 5530321 G A UBQLN3 Silent p.S156S 0.40 TCGA-EE-A2GO-06 11 55541772 55541772 C T OR5D13 Silent p.L287L 0.45 TCGA-EE-A2GO-06 11 55579281 55579281 C T OR5L1 Silent p.F113F 0.72 TCGA-EE-A2GO-06 11 55579581 55579581 C T OR5L1 Silent p.I213I 0.60 TCGA-EE-A2GO-06 11 55735816 55735816 T A OR10AG1 Missense_Mutation p.I42F 0.33 tolerated(0.11) benign(0.007) TCGA-EE-A2GO-06 11 55890508 55890508 C T OR8H3 Silent p.S220S 0.55 TCGA-EE-A2GO-06 11 55944718 55944718 G A OR5J2 Missense_Mutation p.A209T 0.27 tolerated(0.41) benign(0.014) TCGA-EE-A2GO-06 11 56020612 56020612 C T OR5T3 Missense_Mutation p.P313S 0.30 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A2GO-06 11 563619 563619 C T RASSF7 Silent p.L366L 0.73 TCGA-EE-A2GO-06 11 56510325 56510325 C T OR9G4 Silent p.Q321Q 0.21 TCGA-EE-A2GO-06 11 57097589 57097589 C T SSRP1 Missense_Mutation p.E487K 0.35 tolerated(0.21) possibly_damaging(0.679) TCGA-EE-A2GO-06 11 57105954 57105954 C T SSRP1 5'Flank 0.31 TCGA-EE-A2GO-06 11 57175281 57175281 G A SLC43A3 Missense_Mutation p.P487L 0.30 deleterious_low_confidence(0.02) benign(0.01) TCGA-EE-A2GO-06 11 57310380 57310380 G A SMTNL1 Missense_Mutation p.D107N 0.29 deleterious_low_confidence(0.01) benign(0.108) TCGA-EE-A2GO-06 11 57958302 57958302 C T OR9Q2 Missense_Mutation p.L114F 0.35 deleterious(0) probably_damaging(0.918) TCGA-EE-A2GO-06 11 57958625 57958625 C T OR9Q2 Silent p.I221I 0.49 TCGA-EE-A2GO-06 11 57982808 57982808 C T OR1S1 Missense_Mutation p.L198F 0.83 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 11 58604633 58604633 C T GLYATL2 Missense_Mutation p.D111N 0.19 tolerated(0.9) benign(0.003) TCGA-EE-A2GO-06 11 5878068 5878068 G A OR52E8 Missense_Mutation p.P289S 0.45 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GO-06 11 59612876 59612876 C T GIF Silent p.G17G 0.58 TCGA-EE-A2GO-06 11 61290646 61290646 G A SYT7 Silent p.S411S 0.62 TCGA-EE-A2GO-06 11 61643379 61643379 C T FADS3 Silent p.K410K 0.29 TCGA-EE-A2GO-06 11 62065008 62065008 A G SCGB1D4 Silent p.L60L 0.71 TCGA-EE-A2GO-06 11 6232843 6232843 A G FAM160A2 Silent p.L952L 0.62 TCGA-EE-A2GO-06 11 62554116 62554116 C T TAF6L Missense_Mutation p.S406F 0.37 tolerated(0.71) possibly_damaging(0.647) TCGA-EE-A2GO-06 11 6260614 6260614 G A CNGA4 Silent p.R21R 0.26 TCGA-EE-A2GO-06 11 62760976 62760976 G A SLC22A8 Silent p.L483L 0.59 TCGA-EE-A2GO-06 11 63072177 63072177 G A SLC22A10 Missense_Mutation p.D472N 0.71 tolerated(0.5) benign(0.004) TCGA-EE-A2GO-06 11 63414031 63414031 A T ATL3 Missense_Mutation p.F189Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 11 63487655 63487655 G A RTN3 Missense_Mutation p.D561N 0.31 tolerated(0.13) benign(0.393) TCGA-EE-A2GO-06 11 64029442 64029442 C T PLCB3 Silent p.L644L 0.24 TCGA-EE-A2GO-06 11 64678368 64678368 G C ATG2A Missense_Mutation p.R509G 0.70 deleterious(0.01) possibly_damaging(0.676) TCGA-EE-A2GO-06 11 64893060 64893060 C T MRPL49 Silent p.I110I 0.60 TCGA-EE-A2GO-06 11 64893061 64893061 C T MRPL49 Missense_Mutation p.R111W 0.61 deleterious(0.03) benign(0.175) TCGA-EE-A2GO-06 11 64939437 64939437 C T SPDYC Missense_Mutation p.L75F 0.31 deleterious(0.05) possibly_damaging(0.85) TCGA-EE-A2GO-06 11 6519728 6519728 C T DNHD1 Missense_Mutation p.R95C 0.33 benign(0.051) TCGA-EE-A2GO-06 11 65298129 65298129 C T SCYL1 Silent p.F293F 0.31 TCGA-EE-A2GO-06 11 65306007 65306007 C T SCYL1 Silent p.P799P 0.50 TCGA-EE-A2GO-06 11 65314266 65314266 C T LTBP3 Intron 0.36 TCGA-EE-A2GO-06 11 65731532 65731532 C T SART1 Intron 0.23 TCGA-EE-A2GO-06 11 6643349 6643349 G A DCHS1 Silent p.L3186L 0.23 TCGA-EE-A2GO-06 11 66455487 66455487 T A SPTBN2 Silent p.G2146G 0.60 TCGA-EE-A2GO-06 11 6662651 6662651 C T DCHS1 Missense_Mutation p.S65N 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2GO-06 11 67134991 67134991 C T CLCF1 Silent p.Q41Q 0.23 TCGA-EE-A2GO-06 11 67219664 67219664 C T GPR152 Missense_Mutation p.D178N 0.64 tolerated(0.16) probably_damaging(1) TCGA-EE-A2GO-06 11 67803945 67803945 T G NDUFS8 Missense_Mutation p.F173C 0.20 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EE-A2GO-06 11 67803946 67803946 C T NDUFS8 Silent p.F173F 0.24 TCGA-EE-A2GO-06 11 67933494 67933494 C T SUV420H1 Intron 0.31 TCGA-EE-A2GO-06 11 68367958 68367958 C T PPP6R3 Silent p.L730L 0.24 TCGA-EE-A2GO-06 11 68518058 68518058 G A MTL5 Missense_Mutation p.P24L 0.71 deleterious_low_confidence(0.04) benign(0.08) TCGA-EE-A2GO-06 11 68773662 68773662 G C MRGPRF Missense_Mutation p.A39G 0.25 tolerated(0.22) benign(0.056) TCGA-EE-A2GO-06 11 6891707 6891707 C T OR10A2 Missense_Mutation p.S241L 0.32 deleterious(0.01) possibly_damaging(0.752) TCGA-EE-A2GO-06 11 6898379 6898379 C T OR10A4 Silent p.F167F 0.29 TCGA-EE-A2GO-06 11 69951858 69951858 G A ANO1 Silent p.K237K 0.23 TCGA-EE-A2GO-06 11 69978078 69978078 A T ANO1 Missense_Mutation p.K384M 0.57 deleterious(0.01) probably_damaging(0.923) TCGA-EE-A2GO-06 11 700156 700156 C T TMEM80 Silent p.P43P 0.36 TCGA-EE-A2GO-06 11 70194462 70194462 C T PPFIA1 Missense_Mutation p.S700F 0.60 deleterious(0) benign(0.332) TCGA-EE-A2GO-06 11 71189504 71189504 C T NADSYN1 Nonsense_Mutation p.R288* 0.17 TCGA-EE-A2GO-06 11 71238539 71238539 G A KRTAP5-7 Missense_Mutation p.G65R 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GO-06 11 71238544 71238544 C T KRTAP5-7 Silent p.G66G 0.24 TCGA-EE-A2GO-06 11 72539442 72539442 G A ATG16L2 Missense_Mutation p.R504Q 0.24 deleterious(0.04) possibly_damaging(0.69) TCGA-EE-A2GO-06 11 72598615 72598615 A C FCHSD2 Missense_Mutation p.L349R 0.30 deleterious(0.02) benign(0.267) TCGA-EE-A2GO-06 11 74799832 74799832 G A OR2AT4 Silent p.I309I 0.59 TCGA-EE-A2GO-06 11 74873720 74873720 C T SLCO2B1 Nonsense_Mutation p.Q13* 0.62 TCGA-EE-A2GO-06 11 75430921 75430921 G A MOGAT2 Intron 0.19 TCGA-EE-A2GO-06 11 75430922 75430922 G A MOGAT2 Intron 0.19 TCGA-EE-A2GO-06 11 76372013 76372013 G A LRRC32 Silent p.S208S 0.29 TCGA-EE-A2GO-06 11 78412982 78412982 C T TENM4 Missense_Mutation p.R1559Q 0.30 deleterious(0.01) benign(0.086) TCGA-EE-A2GO-06 11 7960947 7960947 C T OR10A3 Missense_Mutation p.G41R 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 11 7981462 7981462 G A NLRP10 Missense_Mutation p.S566F 0.30 tolerated(0.1) benign(0.023) TCGA-EE-A2GO-06 11 8159883 8159883 C T RIC3 Silent p.G121G 0.50 TCGA-EE-A2GO-06 11 8248556 8248556 G A LMO1 Missense_Mutation p.L111F 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GO-06 11 8248557 8248557 G A LMO1 Silent p.H110H 0.44 TCGA-EE-A2GO-06 11 8496350 8496350 G A STK33 Missense_Mutation p.P35S 0.58 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GO-06 11 85447646 85447646 G A SYTL2 Missense_Mutation p.P161S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 11 85459355 85459355 G A SYTL2 Silent p.I71I 0.67 TCGA-EE-A2GO-06 11 88781023 88781023 G A GRM5 Silent p.I6I 0.26 TCGA-EE-A2GO-06 11 88911329 88911329 C T TYR Missense_Mutation p.P70S 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 11 9088336 9088336 C T SCUBE2 Missense_Mutation p.G223E 0.17 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GO-06 11 93212344 93212344 G A SMCO4 Silent p.L4L 0.29 TCGA-EE-A2GO-06 11 93779019 93779019 G A HEPHL1 Silent p.K117K 0.52 TCGA-EE-A2GO-06 12 100774729 100774729 C T SLC17A8 Nonsense_Mutation p.Q118* 0.21 TCGA-EE-A2GO-06 12 101550953 101550953 C T SLC5A8 3'UTR 0.62 TCGA-EE-A2GO-06 12 101759317 101759317 A C UTP20 Silent p.V2013V 0.84 TCGA-EE-A2GO-06 12 102071077 102071077 G A MYBPC1 Missense_Mutation p.G998E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 12 104089423 104089423 C T STAB2 Silent p.I1157I 0.57 TCGA-EE-A2GO-06 12 104714883 104714883 C T TXNRD1 Missense_Mutation p.S335F 0.32 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GO-06 12 105388387 105388387 C T C12orf45 Silent p.T157T 0.33 TCGA-EE-A2GO-06 12 10999742 10999742 A G PRR4 Missense_Mutation p.S109P 0.38 tolerated_low_confidence(0.58) benign(0) TCGA-EE-A2GO-06 12 110012659 110012659 C T MVK Missense_Mutation p.P11L 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 12 110778711 110778711 T G ATP2A2 Missense_Mutation p.L670R 0.24 tolerated(1) benign(0.001) TCGA-EE-A2GO-06 12 111908033 111908033 G A ATXN2 Silent p.V1065V 0.26 TCGA-EE-A2GO-06 12 112579928 112579928 C T TRAFD1 Nonsense_Mutation p.Q227* 0.36 TCGA-EE-A2GO-06 12 11286189 11286189 G A TAS2R30 Missense_Mutation p.P219S 0.07 tolerated(0.22) benign(0.079) TCGA-EE-A2GO-06 12 113533184 113533184 C T DTX1 Missense_Mutation p.H535Y 0.23 tolerated(0.23) probably_damaging(0.965) TCGA-EE-A2GO-06 12 113603672 113603672 G A DDX54 Missense_Mutation p.S527L 0.24 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GO-06 12 113617047 113617047 G A DDX54 Silent p.F155F 0.26 TCGA-EE-A2GO-06 12 11461466 11461466 G A PRB4 Nonsense_Mutation p.Q151* 0.57 TCGA-EE-A2GO-06 12 11506165 11506165 T C PRB1 Missense_Mutation p.N158S 0.38 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2GO-06 12 117660559 117660559 C T NOS1 Silent p.E1346E 0.26 TCGA-EE-A2GO-06 12 118199028 118199028 G A KSR2 Silent p.V258V 0.35 TCGA-EE-A2GO-06 12 118199237 118199237 G A KSR2 Missense_Mutation p.P189S 0.32 tolerated(0.23) benign(0.01) TCGA-EE-A2GO-06 12 118582429 118582429 A G PEBP1 Missense_Mutation p.R129G 0.26 tolerated(1) benign(0) TCGA-EE-A2GO-06 12 119588903 119588903 G A SRRM4 Missense_Mutation p.M386I 0.24 tolerated_low_confidence(0.19) benign(0.005) TCGA-EE-A2GO-06 12 120139553 120139553 G A CIT Silent p.F1806F 0.30 TCGA-EE-A2GO-06 12 120166409 120166409 G A CIT Silent p.L1163L 0.58 TCGA-EE-A2GO-06 12 120572475 120572475 G A GCN1L1 Missense_Mutation p.A2355V 0.22 benign(0.009) TCGA-EE-A2GO-06 12 121416797 121416797 G A HNF1A Missense_Mutation p.D76N 0.32 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2GO-06 12 121454215 121454215 C T C12orf43 Silent p.E21E 0.29 TCGA-EE-A2GO-06 12 121712086 121712086 G A CAMKK2 Missense_Mutation p.P82S 0.33 tolerated_low_confidence(0.14) benign(0.005) TCGA-EE-A2GO-06 12 122396930 122396930 C T WDR66 Missense_Mutation p.P688L 0.32 deleterious(0.01) possibly_damaging(0.703) TCGA-EE-A2GO-06 12 122611883 122611883 C T MLXIP Missense_Mutation p.A165V 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GO-06 12 122674873 122674873 C A LRRC43 Missense_Mutation p.P287T 0.36 deleterious(0.02) possibly_damaging(0.747) TCGA-EE-A2GO-06 12 123471897 123471897 G A PITPNM2 Missense_Mutation p.S1115F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 12 12870877 12870877 C T CDKN1B Missense_Mutation p.P35L 0.67 tolerated(0.12) probably_damaging(0.974) TCGA-EE-A2GO-06 12 129373194 129373194 C T GLT1D1 Silent p.I76I 0.27 TCGA-EE-A2GO-06 12 12940657 12940657 C T APOLD1 3'UTR 0.79 TCGA-EE-A2GO-06 12 129558991 129558991 G A TMEM132D Missense_Mutation p.S910F 0.64 tolerated(0.06) benign(0.275) TCGA-EE-A2GO-06 12 131471824 131471824 C T GPR133 Silent p.F225F 0.34 TCGA-EE-A2GO-06 12 131476909 131476909 C T GPR133 Missense_Mutation p.S313L 0.35 deleterious(0.04) possibly_damaging(0.716) TCGA-EE-A2GO-06 12 131616322 131616322 C T GPR133 Missense_Mutation p.A743V 0.58 deleterious(0.03) possibly_damaging(0.597) TCGA-EE-A2GO-06 12 133225985 133225985 G A POLE Silent p.P1304P 0.34 TCGA-EE-A2GO-06 12 133732562 133732562 G A ZNF10 Missense_Mutation p.D244N 0.26 tolerated(0.5) benign(0.001) TCGA-EE-A2GO-06 12 13526340 13526340 C T C12orf36 Missense_Mutation p.G72E 0.33 probably_damaging(0.969) TCGA-EE-A2GO-06 12 13715684 13715684 C T GRIN2B 3'UTR 0.68 TCGA-EE-A2GO-06 12 14695143 14695143 C T PLBD1 Missense_Mutation p.E140K 0.25 tolerated(0.73) benign(0.006) TCGA-EE-A2GO-06 12 14769630 14769630 T C GUCY2C Missense_Mutation p.I969M 0.15 deleterious(0.03) possibly_damaging(0.619) TCGA-EE-A2GO-06 12 14959305 14959305 C T SMCO3 Missense_Mutation p.E104K 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GO-06 12 15661609 15661609 G A PTPRO Missense_Mutation p.E458K 0.67 deleterious(0.01) benign(0.174) TCGA-EE-A2GO-06 12 18234186 18234186 C T RERGL Missense_Mutation p.G186E 0.56 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GO-06 12 18854444 18854444 C T PLCZ1 Silent p.K336K 0.32 TCGA-EE-A2GO-06 12 18858151 18858151 G A PLCZ1 Silent p.S271S 0.27 TCGA-EE-A2GO-06 12 18858152 18858152 G A PLCZ1 Missense_Mutation p.S271F 0.28 tolerated(0.3) benign(0.008) TCGA-EE-A2GO-06 12 18891473 18891473 T G CAPZA3 Missense_Mutation p.S91A 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 12 2019079 2019079 G A CACNA2D4 Missense_Mutation p.S160F 0.23 deleterious(0.01) benign(0.126) TCGA-EE-A2GO-06 12 21636377 21636377 C T RECQL Silent p.R211R 0.30 TCGA-EE-A2GO-06 12 22065976 22065976 G A ABCC9 Missense_Mutation p.R281W 0.33 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A2GO-06 12 22215238 22215238 C T CMAS Silent p.A328A 0.54 TCGA-EE-A2GO-06 12 24736861 24736861 C T LINC00477 RNA 0.37 TCGA-EE-A2GO-06 12 25034321 25034321 G A BCAT1 Nonsense_Mutation p.R114* 0.18 TCGA-EE-A2GO-06 12 27540248 27540248 G A ARNTL2 Missense_Mutation p.D218N 0.45 tolerated(0.15) possibly_damaging(0.861) TCGA-EE-A2GO-06 12 27829447 27829447 C T PPFIBP1 Silent p.F516F 0.68 TCGA-EE-A2GO-06 12 27832956 27832956 C T PPFIBP1 Silent p.P625P 0.52 TCGA-EE-A2GO-06 12 31648823 31648823 C T DENND5B Missense_Mutation p.R53K 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 12 31819115 31819115 G A METTL20 Missense_Mutation p.G137R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 12 394648 394648 T C KDM5A Missense_Mutation p.M1683V 0.53 tolerated_low_confidence(0.95) benign(0.003) TCGA-EE-A2GO-06 12 41587911 41587911 G A PDZRN4 Missense_Mutation p.G255E 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GO-06 12 47472495 47472495 G A AMIGO2 Silent p.T97T 0.32 TCGA-EE-A2GO-06 12 47472611 47472611 G A AMIGO2 Silent p.L59L 0.29 TCGA-EE-A2GO-06 12 47472612 47472612 G A AMIGO2 Silent p.N58N 0.28 TCGA-EE-A2GO-06 12 4920418 4920418 C T KCNA6 Missense_Mutation p.S404L 0.64 deleterious(0) benign(0.329) TCGA-EE-A2GO-06 12 49445252 49445252 G A KMT2D Silent p.S738S 0.36 TCGA-EE-A2GO-06 12 49484963 49484963 G A DHH Silent p.F171F 0.34 TCGA-EE-A2GO-06 12 51279235 51279235 G A TMPRSS12 Intron 0.31 TCGA-EE-A2GO-06 12 51511477 51511477 C T TFCP2 Missense_Mutation p.E110K 0.37 tolerated(0.07) benign(0.215) TCGA-EE-A2GO-06 12 51685491 51685491 G A BIN2 Missense_Mutation p.P467S 0.27 tolerated_low_confidence(0.19) benign(0.024) TCGA-EE-A2GO-06 12 52082618 52082618 A T SCN8A Missense_Mutation p.I231F 0.27 deleterious(0.02) possibly_damaging(0.826) TCGA-EE-A2GO-06 12 52845482 52845482 G A KRT6B Silent p.F127F 0.41 TCGA-EE-A2GO-06 12 52940080 52940080 C T KRT71 Missense_Mutation p.E439K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 12 52943959 52943959 C T KRT71 Silent p.L170L 0.26 TCGA-EE-A2GO-06 12 53002031 53002031 G A KRT73 Silent p.S524S 0.24 TCGA-EE-A2GO-06 12 53002032 53002032 G A KRT73 Missense_Mutation p.S524F 0.25 deleterious_low_confidence(0.04) benign(0.089) TCGA-EE-A2GO-06 12 53068832 53068832 G A KRT1 3'UTR 0.28 TCGA-EE-A2GO-06 12 53096893 53096893 C T KRT77 Missense_Mutation p.G109E 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GO-06 12 53776507 53776507 C T SP1 Missense_Mutation p.A259V 0.33 deleterious(0.01) possibly_damaging(0.739) TCGA-EE-A2GO-06 12 53925563 53925563 G A ATF7 Nonsense_Mutation p.Q298* 0.47 TCGA-EE-A2GO-06 12 54348791 54348791 C T HOXC12 Silent p.F26F 0.46 TCGA-EE-A2GO-06 12 54912749 54912749 G A NCKAP1L Missense_Mutation p.R491H 0.64 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 12 55759518 55759518 C T OR6C75 Silent p.T208T 0.30 TCGA-EE-A2GO-06 12 55945751 55945751 C T OR6C4 Silent p.S247S 0.35 TCGA-EE-A2GO-06 12 56077725 56077725 G A METTL7B Nonsense_Mutation p.W209* 0.20 TCGA-EE-A2GO-06 12 56092631 56092631 G T ITGA7 Silent p.R291R 0.39 TCGA-EE-A2GO-06 12 56211530 56211530 C A SARNP 5'UTR 0.29 TCGA-EE-A2GO-06 12 56427098 56427098 G A IKZF4 Silent p.K330K 0.33 TCGA-EE-A2GO-06 12 57109708 57109708 C T NACA Missense_Mutation p.G716E 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.699) TCGA-EE-A2GO-06 12 57110594 57110594 G A NACA Intron 0.40 TCGA-EE-A2GO-06 12 57110644 57110644 G A NACA Intron 0.35 TCGA-EE-A2GO-06 12 57485608 57485608 G A NAB2 Missense_Mutation p.G262R 0.30 tolerated(0.36) possibly_damaging(0.727) TCGA-EE-A2GO-06 12 57579374 57579374 G A LRP1 Missense_Mutation p.R2175H 0.59 benign(0.054) TCGA-EE-A2GO-06 12 57601895 57601895 C T LRP1 Silent p.G3978G 0.73 TCGA-EE-A2GO-06 12 57601896 57601896 C T LRP1 Nonsense_Mutation p.R3979* 0.74 TCGA-EE-A2GO-06 12 57619154 57619154 G A NXPH4 Missense_Mutation p.G184E 0.32 tolerated_low_confidence(0.55) benign(0.001) TCGA-EE-A2GO-06 12 57619155 57619155 G A NXPH4 Silent p.G184G 0.32 TCGA-EE-A2GO-06 12 57881746 57881746 C T MARS 5'UTR 0.73 TCGA-EE-A2GO-06 12 57924491 57924491 A G DCTN2 Missense_Mutation p.M401T 0.34 deleterious(0.01) benign(0.117) TCGA-EE-A2GO-06 12 58001016 58001016 C T DTX3 Missense_Mutation p.P124S 0.62 tolerated_low_confidence(0.81) unknown(0) TCGA-EE-A2GO-06 12 58122118 58122118 C T AGAP2 Missense_Mutation p.R867K 0.26 tolerated(0.22) benign(0.02) TCGA-EE-A2GO-06 12 58204325 58204325 G A AVIL Silent p.L190L 0.29 TCGA-EE-A2GO-06 12 58223308 58223308 G A CTDSP2 Missense_Mutation p.R46C 0.65 tolerated(0.19) benign(0.003) TCGA-EE-A2GO-06 12 6705270 6705270 G A CHD4 Silent p.I642I 0.42 TCGA-EE-A2GO-06 12 6979657 6979657 C T TPI1 3'UTR 0.25 TCGA-EE-A2GO-06 12 70004427 70004427 G A LRRC10 Silent p.L64L 0.25 TCGA-EE-A2GO-06 12 70048754 70048754 T C BEST3 Missense_Mutation p.E647G 0.28 tolerated_low_confidence(0.09) benign(0.026) TCGA-EE-A2GO-06 12 70188987 70188987 C T RAB3IP Missense_Mutation p.P267S 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GO-06 12 70954580 70954580 C T PTPRB Missense_Mutation p.E1435K 0.31 deleterious(0.04) benign(0.381) TCGA-EE-A2GO-06 12 71032871 71032871 C T PTPRR 3'UTR 0.45 TCGA-EE-A2GO-06 12 7261754 7261754 C T C1RL Missense_Mutation p.G8E 0.21 deleterious_low_confidence(0.01) benign(0.034) TCGA-EE-A2GO-06 12 7531810 7531810 C T CD163L1 Missense_Mutation p.G712E 0.57 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 12 7636224 7636224 C T CD163 Missense_Mutation p.E943K 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 12 7636225 7636225 C T CD163 Silent p.V942V 0.63 TCGA-EE-A2GO-06 12 77449680 77449680 G A E2F7 Silent p.F108F 0.41 TCGA-EE-A2GO-06 12 7803718 7803718 C T APOBEC1 Silent p.R154R 0.63 TCGA-EE-A2GO-06 12 78225449 78225449 C T NAV3 Missense_Mutation p.L70F 0.32 tolerated_low_confidence(0.32) benign(0.003) TCGA-EE-A2GO-06 12 79693274 79693274 G A SYT1 Silent p.V251V 0.25 TCGA-EE-A2GO-06 12 79693302 79693302 C T SYT1 Missense_Mutation p.R261C 0.25 deleterious(0) probably_damaging(0.957) TCGA-EE-A2GO-06 12 81101525 81101525 C T MYF6 Silent p.G9G 0.23 TCGA-EE-A2GO-06 12 8197488 8197488 C T FOXJ2 Silent p.L251L 0.30 TCGA-EE-A2GO-06 12 8330010 8330010 G A ZNF705A Missense_Mutation p.R245K 0.24 tolerated(0.53) benign(0.001) TCGA-EE-A2GO-06 12 8374535 8374535 C T FAM90A1 Silent p.Q426Q 0.11 TCGA-EE-A2GO-06 12 85431933 85431933 C T LRRIQ1 Intron 0.67 TCGA-EE-A2GO-06 12 85449792 85449792 C A LRRIQ1 Missense_Mutation p.N407K 0.60 tolerated(0.81) benign(0.07) TCGA-EE-A2GO-06 12 85492249 85492249 C T LRRIQ1 Missense_Mutation p.H1002Y 0.34 tolerated(0.64) possibly_damaging(0.876) TCGA-EE-A2GO-06 12 91546958 91546958 G A DCN Missense_Mutation p.P221S 0.23 tolerated(1) benign(0.001) TCGA-EE-A2GO-06 12 9162098 9162098 C T KLRG1 Missense_Mutation p.P179S 0.35 tolerated(1) benign(0.002) TCGA-EE-A2GO-06 12 9223141 9223141 C T A2M Silent p.A1379A 0.46 TCGA-EE-A2GO-06 12 93100500 93100500 G A C12orf74 Silent p.Q31Q 0.35 TCGA-EE-A2GO-06 12 93100501 93100501 G A C12orf74 Missense_Mutation p.G32R 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 12 95689939 95689939 C T VEZT Missense_Mutation p.S579F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 12 97147570 97147570 C T C12orf55 Silent p.P2578P 0.24 TCGA-EE-A2GO-06 13 102359121 102359121 C T ITGBL1 Missense_Mutation p.S383F 0.32 tolerated(0.07) possibly_damaging(0.797) TCGA-EE-A2GO-06 13 106119381 106119381 G A DAOA Intron 0.28 TCGA-EE-A2GO-06 13 111114710 111114710 C T COL4A2 Silent p.F585F 0.70 TCGA-EE-A2GO-06 13 113047373 113047373 G A SPACA7 Missense_Mutation p.D45N 0.27 tolerated(0.14) benign(0.389) TCGA-EE-A2GO-06 13 113143946 113143946 T A TUBGCP3 Missense_Mutation p.E838D 0.28 tolerated(0.74) benign(0) TCGA-EE-A2GO-06 13 113795256 113795256 G A F10 Missense_Mutation p.D132N 0.58 tolerated(0.53) benign(0.048) TCGA-EE-A2GO-06 13 113798367 113798367 C T F10 Silent p.I235I 0.26 TCGA-EE-A2GO-06 13 113965172 113965172 C T LAMP1 Silent p.F184F 0.58 TCGA-EE-A2GO-06 13 20048178 20048178 G A TPTE2 Missense_Mutation p.L90F 0.31 deleterious(0.03) benign(0.26) TCGA-EE-A2GO-06 13 24864988 24864988 G C SPATA13 Missense_Mutation p.A1016P 0.32 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GO-06 13 25171687 25171687 A G RP11-556N21.1 RNA 0.27 TCGA-EE-A2GO-06 13 25444853 25444853 C T RNF17 Missense_Mutation p.P1475S 0.31 tolerated(0.16) possibly_damaging(0.465) TCGA-EE-A2GO-06 13 25671427 25671427 A T PABPC3 Missense_Mutation p.Y364F 0.64 deleterious(0) possibly_damaging(0.739) TCGA-EE-A2GO-06 13 27255242 27255242 T A WASF3 Missense_Mutation p.H256Q 0.25 deleterious(0.03) possibly_damaging(0.474) TCGA-EE-A2GO-06 13 28877372 28877372 T G FLT1 Missense_Mutation p.K1317Q 0.32 tolerated(0.23) benign(0.157) TCGA-EE-A2GO-06 13 29933610 29933610 G A MTUS2 Silent p.K1049K 0.38 TCGA-EE-A2GO-06 13 30829664 30829664 G A KATNAL1 Nonsense_Mutation p.R138* 0.62 TCGA-EE-A2GO-06 13 31848690 31848690 C T B3GALTL Silent p.T235T 0.60 TCGA-EE-A2GO-06 13 32367062 32367062 C T RXFP2 Silent p.I541I 0.33 TCGA-EE-A2GO-06 13 32691490 32691490 C T FRY Missense_Mutation p.S115F 0.32 deleterious(0) probably_damaging(0.971) TCGA-EE-A2GO-06 13 32945213 32945213 C T BRCA2 Nonsense_Mutation p.Q2870* 0.45 TCGA-EE-A2GO-06 13 33635235 33635235 C T KL Silent p.C673C 0.66 TCGA-EE-A2GO-06 13 33704024 33704024 C T STARD13 Missense_Mutation p.E264K 0.54 deleterious(0.02) possibly_damaging(0.611) TCGA-EE-A2GO-06 13 36129146 36129146 C T NBEA Nonsense_Mutation p.R2277* 0.36 TCGA-EE-A2GO-06 13 37007295 37007295 C T CCNA1 Silent p.P78P 0.32 TCGA-EE-A2GO-06 13 37011825 37011825 G A CCNA1 Silent p.K119K 0.30 TCGA-EE-A2GO-06 13 41384956 41384959 CCAT TTA SLC25A15 3'Flank 0.12 TCGA-EE-A2GO-06 13 42830451 42830451 C T FHP1 RNA 0.23 TCGA-EE-A2GO-06 13 43788062 43788062 C T ENOX1 3'UTR 0.35 TCGA-EE-A2GO-06 13 43918819 43918819 C T ENOX1 Silent p.R297R 0.37 TCGA-EE-A2GO-06 13 46563054 46563054 G A ZC3H13 Missense_Mutation p.P375S 0.62 unknown(0) TCGA-EE-A2GO-06 13 49885072 49885072 G A CAB39L Nonsense_Mutation p.Q298* 0.28 TCGA-EE-A2GO-06 13 50123648 50123648 C T RCBTB1 Missense_Mutation p.D331N 0.56 deleterious(0.02) benign(0.232) TCGA-EE-A2GO-06 13 52952717 52952717 G A THSD1 Missense_Mutation p.S463L 0.70 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2GO-06 13 61985483 61985483 C T PCDH20 Missense_Mutation p.E917K 0.27 tolerated(1) benign(0) TCGA-EE-A2GO-06 13 73372048 73372048 C T PIBF1 Missense_Mutation p.R186C 0.32 deleterious(0) possibly_damaging(0.771) TCGA-EE-A2GO-06 13 84454144 84454144 C T SLITRK1 Missense_Mutation p.S500N 0.67 tolerated(1) benign(0.028) TCGA-EE-A2GO-06 13 90883435 90883435 G A MIR622 5'Flank 0.16 TCGA-EE-A2GO-06 13 94958287 94958287 C T GPC6 Silent p.R354R 0.28 TCGA-EE-A2GO-06 13 99115960 99115960 G A STK24 Missense_Mutation p.S317F 0.72 deleterious(0) probably_damaging(0.927) TCGA-EE-A2GO-06 13 99337101 99337101 C T SLC15A1 Silent p.R668R 0.31 TCGA-EE-A2GO-06 13 99374081 99374081 C T SLC15A1 Missense_Mutation p.G148R 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 14 100173984 100173984 G A CYP46A1 Missense_Mutation p.G221E 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 14 100363618 100363618 G A EML1 Missense_Mutation p.D291N 0.26 deleterious(0) possibly_damaging(0.671) TCGA-EE-A2GO-06 14 100996347 100996347 C T WDR25 Missense_Mutation p.S535F 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2GO-06 14 101458254 101458254 C T SNORD114-28 3'Flank 0.33 TCGA-EE-A2GO-06 14 101500107 101500107 A G MIR495 RNA 0.47 TCGA-EE-A2GO-06 14 101512845 101512845 C T MIR487B RNA 0.24 TCGA-EE-A2GO-06 14 102472431 102472431 C T DYNC1H1 Silent p.V1880V 0.21 TCGA-EE-A2GO-06 14 103478478 103478478 C T CDC42BPB Missense_Mutation p.D75N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 14 104206767 104206767 G A PPP1R13B Silent p.T662T 0.21 TCGA-EE-A2GO-06 14 104206768 104206768 G A PPP1R13B Missense_Mutation p.T662I 0.22 tolerated(0.15) benign(0.056) TCGA-EE-A2GO-06 14 104452583 104452583 G A TDRD9 Silent p.V347V 0.48 TCGA-EE-A2GO-06 14 104493047 104493047 C T TDRD9 Missense_Mutation p.P1018L 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 14 104639700 104639700 G A KIF26A Missense_Mutation p.A573T 0.27 deleterious(0) benign(0.298) TCGA-EE-A2GO-06 14 104640049 104640049 G A KIF26A Missense_Mutation p.G625E 0.22 deleterious(0) probably_damaging(0.914) TCGA-EE-A2GO-06 14 105410475 105410475 C G AHNAK2 Silent p.V3771V 0.48 TCGA-EE-A2GO-06 14 106322074 106322074 C T IGHM Missense_Mutation p.E84K 0.25 tolerated(0.37) benign(0.006) TCGA-EE-A2GO-06 14 106692098 106692098 G A IGHV3-21 Silent p.F9F 0.18 TCGA-EE-A2GO-06 14 106926337 106926337 G A IGHV3-43 Missense_Mutation p.L69F 0.39 tolerated_low_confidence(0.66) benign(0.002) TCGA-EE-A2GO-06 14 106994057 106994057 G A IGHV3-48 Silent p.S36S 0.30 TCGA-EE-A2GO-06 14 107034921 107034921 G A IGHV5-51 Silent p.I53I 0.60 TCGA-EE-A2GO-06 14 107211097 107211097 C T IGHV3-73 Silent p.L64L 0.38 TCGA-EE-A2GO-06 14 19553770 19553770 C T POTEG Silent p.G118G 0.04 TCGA-EE-A2GO-06 14 20249310 20249310 C T OR4M1 Missense_Mutation p.H277Y 0.26 tolerated(1) possibly_damaging(0.883) TCGA-EE-A2GO-06 14 20345323 20345323 G A OR4K2 Silent p.R299R 0.17 TCGA-EE-A2GO-06 14 20528749 20528749 C T OR4L1 Silent p.P182P 0.36 TCGA-EE-A2GO-06 14 20612223 20612223 G T OR4N5 Missense_Mutation p.G110V 0.48 deleterious(0.03) probably_damaging(0.912) TCGA-EE-A2GO-06 14 20978885 20978885 C T RNASE10 Silent p.I85I 0.21 TCGA-EE-A2GO-06 14 21464434 21464434 C T METTL17 Missense_Mutation p.P355S 0.43 tolerated(0.11) benign(0.098) TCGA-EE-A2GO-06 14 21464435 21464435 C T METTL17 Missense_Mutation p.P355L 0.43 deleterious(0) benign(0.335) TCGA-EE-A2GO-06 14 21870196 21870196 C T CHD8 Missense_Mutation p.E1328K 0.21 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GO-06 14 21945360 21945360 G C TOX4 5'UTR 0.43 TCGA-EE-A2GO-06 14 22111759 22111759 G A TRAV1-2 Silent p.K93K 0.17 TCGA-EE-A2GO-06 14 22466179 22466179 G A TRAV17 Missense_Mutation p.E37K 0.43 tolerated(0.08) benign(0.403) TCGA-EE-A2GO-06 14 22675939 22675939 A G TRAV34 Missense_Mutation p.K84R 0.33 tolerated(0.69) benign(0.015) TCGA-EE-A2GO-06 14 22891799 22891799 T C TRDV2 Silent p.P37P 0.45 TCGA-EE-A2GO-06 14 23465426 23465426 G A C14orf93 Missense_Mutation p.P217S 0.45 tolerated_low_confidence(0.09) benign(0.003) TCGA-EE-A2GO-06 14 23745008 23745008 G C HOMEZ Missense_Mutation p.R477G 0.21 deleterious(0.04) possibly_damaging(0.743) TCGA-EE-A2GO-06 14 23777111 23777111 C T BCL2L2-PABPN1 Silent p.A45A 0.46 TCGA-EE-A2GO-06 14 23842317 23842317 G A IL25 5'UTR 0.22 TCGA-EE-A2GO-06 14 23855140 23855140 G A MYH6 Silent p.S1720S 0.25 TCGA-EE-A2GO-06 14 23858907 23858907 G A MYH6 Missense_Mutation p.R1252W 0.40 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GO-06 14 24529221 24529221 C T LRRC16B Silent p.I637I 0.24 TCGA-EE-A2GO-06 14 24588383 24588383 C T DCAF11 Missense_Mutation p.S270F 0.27 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GO-06 14 24656301 24656301 G A IPO4 Missense_Mutation p.P215L 0.44 tolerated(0.34) benign(0.001) TCGA-EE-A2GO-06 14 24656302 24656302 G A IPO4 Missense_Mutation p.P215S 0.44 tolerated(0.57) benign(0.001) TCGA-EE-A2GO-06 14 26917527 26917527 G A NOVA1 Silent p.L388L 0.35 TCGA-EE-A2GO-06 14 31542114 31542114 G A AP4S1 Missense_Mutation p.E77K 0.16 deleterious(0) probably_damaging(0.926) TCGA-EE-A2GO-06 14 31597181 31597181 A C HECTD1 Silent p.P1597P 0.15 TCGA-EE-A2GO-06 14 31597182 31597182 G A HECTD1 Missense_Mutation p.P1597L 0.15 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GO-06 14 38293099 38293099 G A TTC6 Silent p.L1637L 0.13 TCGA-EE-A2GO-06 14 38679290 38679290 C T SSTR1 Silent p.F232F 0.21 TCGA-EE-A2GO-06 14 39502383 39502383 G A SEC23A 3'UTR 0.49 TCGA-EE-A2GO-06 14 42356795 42356795 C T LRFN5 Missense_Mutation p.P323S 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 14 45374825 45374825 T C C14orf28 3'UTR 0.13 TCGA-EE-A2GO-06 14 50298783 50298783 C T NEMF Missense_Mutation p.E290K 0.60 deleterious(0.04) possibly_damaging(0.593) TCGA-EE-A2GO-06 14 51094844 51094844 G A ATL1 Silent p.V405V 0.69 TCGA-EE-A2GO-06 14 51347195 51347195 G A ABHD12B Missense_Mutation p.E121K 0.21 tolerated(0.65) benign(0.008) TCGA-EE-A2GO-06 14 51446146 51446146 C T TRIM9 Missense_Mutation p.G677S 0.28 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GO-06 14 52899012 52899012 C T TXNDC16 3'UTR 0.16 TCGA-EE-A2GO-06 14 52957575 52957575 C T TXNDC16 Missense_Mutation p.G302E 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GO-06 14 55636237 55636237 G A DLGAP5 Silent p.L476L 0.28 TCGA-EE-A2GO-06 14 55818527 55818527 C T FBXO34 Silent p.S473S 0.19 TCGA-EE-A2GO-06 14 56107904 56107904 C T KTN1 Missense_Mutation p.S694L 0.30 deleterious(0.04) benign(0.138) TCGA-EE-A2GO-06 14 60193723 60193723 G A RTN1 Missense_Mutation p.S560F 0.32 tolerated(0.09) benign(0.043) TCGA-EE-A2GO-06 14 60193852 60193852 G A RTN1 Missense_Mutation p.A517V 0.36 tolerated(0.17) benign(0.004) TCGA-EE-A2GO-06 14 60194362 60194362 C T RTN1 Missense_Mutation p.G347E 0.40 deleterious(0.03) possibly_damaging(0.779) TCGA-EE-A2GO-06 14 60212976 60212976 C T RTN1 Silent p.G155G 0.25 TCGA-EE-A2GO-06 14 60213067 60213067 C T RTN1 Missense_Mutation p.G125E 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A2GO-06 14 62462985 62462985 C T SYT16 Missense_Mutation p.S83F 0.33 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2GO-06 14 62567374 62567374 G A SYT16 Silent p.K629K 0.45 TCGA-EE-A2GO-06 14 65209912 65209912 C T PLEKHG3 Missense_Mutation p.R995C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 14 70633378 70633378 C T SLC8A3 Missense_Mutation p.E588K 0.50 tolerated(0.12) possibly_damaging(0.884) TCGA-EE-A2GO-06 14 70712801 70712801 G A ADAM21P1 RNA 0.23 TCGA-EE-A2GO-06 14 70924998 70924998 G C ADAM21 Missense_Mutation p.W261S 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 14 70924999 70924999 G A ADAM21 Nonsense_Mutation p.W261* 0.16 TCGA-EE-A2GO-06 14 70925121 70925121 C T ADAM21 Missense_Mutation p.S302L 0.20 tolerated(0.36) benign(0.03) TCGA-EE-A2GO-06 14 71199412 71199412 G A MAP3K9 Missense_Mutation p.P906S 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GO-06 14 72925086 72925086 G A RGS6 Splice_Site p.X114_splice 0.28 TCGA-EE-A2GO-06 14 74411285 74411285 G A FAM161B Silent p.Y289Y 0.16 TCGA-EE-A2GO-06 14 75266096 75266096 C T YLPM1 Missense_Mutation p.R1366C 0.17 probably_damaging(0.995) TCGA-EE-A2GO-06 14 76452102 76452102 C T IFT43 5'Flank 0.26 TCGA-EE-A2GO-06 14 77292939 77292939 C T C14orf166B Intron 0.44 TCGA-EE-A2GO-06 14 77304259 77304259 C T C14orf166B Silent p.I180I 0.45 TCGA-EE-A2GO-06 14 77745123 77745123 G A POMT2 Missense_Mutation p.L661F 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 14 77845149 77845149 G A SAMD15 Missense_Mutation p.G463E 0.28 tolerated(0.74) benign(0.065) TCGA-EE-A2GO-06 14 77889128 77889128 G A NOXRED1 Silent p.I35I 0.29 TCGA-EE-A2GO-06 14 77919712 77919712 G A VIPAS39 Silent p.L42L 0.22 TCGA-EE-A2GO-06 14 77951251 77951251 G A ISM2 Silent p.S51S 0.10 TCGA-EE-A2GO-06 14 78399810 78399810 C T ADCK1 3'UTR 0.36 TCGA-EE-A2GO-06 14 79111549 79111549 G A NRXN3 5'UTR 0.55 TCGA-EE-A2GO-06 14 80328182 80328182 G A NRXN3 Missense_Mutation p.D1021N 0.22 deleterious(0) benign(0) TCGA-EE-A2GO-06 14 81209607 81209607 T G CEP128 Missense_Mutation p.K873T 0.27 deleterious(0) probably_damaging(0.951) TCGA-EE-A2GO-06 14 88407792 88407792 C T GALC Missense_Mutation p.G594E 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 14 89178746 89178746 T A EML5 Missense_Mutation p.N509I 0.20 tolerated(0.18) benign(0.373) TCGA-EE-A2GO-06 14 89202718 89202718 G A EML5 Missense_Mutation p.R347C 0.49 tolerated(0.15) benign(0.02) TCGA-EE-A2GO-06 14 89206879 89206879 C T EML5 Missense_Mutation p.R188Q 0.50 deleterious(0.01) possibly_damaging(0.884) TCGA-EE-A2GO-06 14 90784408 90784408 G A NRDE2 Silent p.S38S 0.24 TCGA-EE-A2GO-06 14 91044585 91044585 G A TTC7B Silent p.L725L 0.42 TCGA-EE-A2GO-06 14 91738935 91738935 A T CCDC88C 3'UTR 0.50 TCGA-EE-A2GO-06 14 92349413 92349413 G C FBLN5 Missense_Mutation p.D249E 0.51 deleterious(0) possibly_damaging(0.678) TCGA-EE-A2GO-06 14 92471348 92471348 G A TRIP11 Missense_Mutation p.S991F 0.26 deleterious(0.02) possibly_damaging(0.784) TCGA-EE-A2GO-06 14 93142946 93142946 G A RIN3 Missense_Mutation p.G821E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 14 93954030 93954030 G A UNC79 Missense_Mutation p.G37D 0.49 tolerated(0.11) benign(0.12) TCGA-EE-A2GO-06 14 94046543 94046543 T A UNC79 Missense_Mutation p.S651T 0.52 tolerated(0.13) benign(0.372) TCGA-EE-A2GO-06 14 94109963 94109963 C T UNC79 Silent p.I1850I 0.38 TCGA-EE-A2GO-06 14 94155165 94155165 C T UNC79 Missense_Mutation p.P2217L 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GO-06 14 94404144 94404144 G A ASB2 Silent p.I557I 0.21 TCGA-EE-A2GO-06 14 94712731 94712731 C T PPP4R4 Missense_Mutation p.A489V 0.17 tolerated(0.07) benign(0.318) TCGA-EE-A2GO-06 14 94756499 94756499 G A SERPINA10 Silent p.L144L 0.21 TCGA-EE-A2GO-06 14 94756831 94756831 G A SERPINA10 Missense_Mutation p.P34S 0.39 tolerated(0.74) benign(0) TCGA-EE-A2GO-06 14 95053788 95053788 G A SERPINA5 Missense_Mutation p.R30K 0.19 tolerated(1) benign(0.001) TCGA-EE-A2GO-06 14 96152787 96152787 C T TCL1B 5'UTR 0.48 TCGA-EE-A2GO-06 14 96731052 96731052 G A BDKRB1 Missense_Mutation p.E345K 0.45 tolerated(0.33) benign(0.011) TCGA-EE-A2GO-06 14 96953234 96953234 G A AK7 Splice_Site p.X659_splice 0.39 TCGA-EE-A2GO-06 14 99865423 99865423 G A SETD3 Missense_Mutation p.R460C 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-EE-A2GO-06 15 101858555 101858555 C T PCSK6 Silent p.G845G 0.80 TCGA-EE-A2GO-06 15 102358667 102358667 C T OR4F15 Missense_Mutation p.S93F 0.41 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-EE-A2GO-06 15 102358668 102358668 C T OR4F15 Silent p.S93S 0.40 TCGA-EE-A2GO-06 15 102359049 102359049 C T OR4F15 Silent p.F220F 0.61 TCGA-EE-A2GO-06 15 20651166 20651166 C T HERC2P3 RNA 0.20 TCGA-EE-A2GO-06 15 21071301 21071301 C T POTEB2 Missense_Mutation p.D104N 0.15 tolerated(0.23) benign(0.162) TCGA-EE-A2GO-06 15 22928507 22928507 C T CYFIP1 Silent p.F128F 0.21 TCGA-EE-A2GO-06 15 23692317 23692317 T C GOLGA6L2 Silent p.Q4Q 0.15 TCGA-EE-A2GO-06 15 23812515 23812515 C G MKRN3 3'UTR 0.25 TCGA-EE-A2GO-06 15 23890878 23890878 G A MAGEL2 Missense_Mutation p.S68L 0.50 deleterious_low_confidence(0.04) benign(0.025) TCGA-EE-A2GO-06 15 23931489 23931489 G A NDN Silent p.S292S 0.47 TCGA-EE-A2GO-06 15 24922292 24922292 C T NPAP1 Silent p.I426I 0.51 TCGA-EE-A2GO-06 15 24923207 24923207 G A NPAP1 Silent p.G731G 0.20 TCGA-EE-A2GO-06 15 24923350 24923350 G A NPAP1 Missense_Mutation p.G779E 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.791) TCGA-EE-A2GO-06 15 24923830 24923830 G A NPAP1 Missense_Mutation p.S939N 0.26 tolerated(0.06) benign(0.068) TCGA-EE-A2GO-06 15 25417708 25417708 C T SNORD115-3 5'Flank 0.42 TCGA-EE-A2GO-06 15 25446358 25446358 C T SNORD115-19 5'Flank 0.30 TCGA-EE-A2GO-06 15 26806166 26806166 G A GABRB3 Silent p.F331F 0.23 TCGA-EE-A2GO-06 15 26828491 26828491 C T GABRB3 Missense_Mutation p.E178K 0.28 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2GO-06 15 27725843 27725843 G A GABRG3 Missense_Mutation p.V208M 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 15 27777961 27777961 G A GABRG3 Silent p.R446R 0.51 TCGA-EE-A2GO-06 15 28501248 28501248 G A HERC2 Silent p.L911L 0.19 TCGA-EE-A2GO-06 15 31218060 31218060 G A FAN1 Silent p.G802G 0.21 TCGA-EE-A2GO-06 15 34040379 34040379 C T RYR3 Missense_Mutation p.T2685I 0.30 benign(0.441) TCGA-EE-A2GO-06 15 34395113 34395113 A C PGBD4 Missense_Mutation p.Q127H 0.47 tolerated(0.3) benign(0.001) TCGA-EE-A2GO-06 15 34396569 34396569 C T PGBD4 3'UTR 0.41 TCGA-EE-A2GO-06 15 37110049 37110049 C T CSNK1A1P1 RNA 0.16 TCGA-EE-A2GO-06 15 39886554 39886554 G A THBS1 Missense_Mutation p.D1140N 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 15 41146874 41146874 C T SPINT1 Silent p.F384F 0.25 TCGA-EE-A2GO-06 15 41988789 41988789 A T MGA Missense_Mutation p.E527D 0.49 deleterious(0.03) benign(0.011) TCGA-EE-A2GO-06 15 42132827 42132827 G A PLA2G4B Missense_Mutation p.S294N 0.43 deleterious(0.04) benign(0.003) TCGA-EE-A2GO-06 15 43574238 43574238 C T TGM7 Silent p.G385G 0.56 TCGA-EE-A2GO-06 15 43584964 43584964 G A TGM7 Missense_Mutation p.H128Y 0.23 tolerated(1) benign(0.003) TCGA-EE-A2GO-06 15 43813588 43813588 G A MAP1A 5'UTR 0.21 TCGA-EE-A2GO-06 15 43814203 43814203 C T MAP1A Missense_Mutation p.R178C 0.41 probably_damaging(0.999) TCGA-EE-A2GO-06 15 43893739 43893739 G A STRC Missense_Mutation p.P1519L 0.33 deleterious(0) benign(0.22) TCGA-EE-A2GO-06 15 44092774 44092774 G A HYPK 5'UTR 0.28 TCGA-EE-A2GO-06 15 45353347 45353347 C T SORD Silent p.S116S 0.20 TCGA-EE-A2GO-06 15 45398524 45398524 C T DUOX2 Silent p.A649A 0.21 TCGA-EE-A2GO-06 15 48744865 48744865 C T FBN1 Silent p.Q1813Q 0.22 TCGA-EE-A2GO-06 15 49081157 49081157 G A CEP152 Silent p.S338S 0.15 TCGA-EE-A2GO-06 15 49160067 49160067 C T SHC4 Splice_Site p.X299_splice 0.19 TCGA-EE-A2GO-06 15 50212507 50212507 G A ATP8B4 Missense_Mutation p.A620V 0.47 tolerated(0.87) benign(0.006) TCGA-EE-A2GO-06 15 50528304 50528304 G A SLC27A2 3'UTR 0.18 TCGA-EE-A2GO-06 15 50866873 50866873 A T TRPM7 Missense_Mutation p.F1688Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 15 51289871 51289871 G A AP4E1 Missense_Mutation p.E899K 0.27 tolerated_low_confidence(0.59) benign(0.016) TCGA-EE-A2GO-06 15 51696916 51696916 C T GLDN Missense_Mutation p.P541S 0.46 tolerated(0.12) probably_damaging(0.944) TCGA-EE-A2GO-06 15 51742477 51742477 G A DMXL2 Missense_Mutation p.S2918L 0.45 deleterious(0) possibly_damaging(0.572) TCGA-EE-A2GO-06 15 51773239 51773239 T - DMXL2 Frame_Shift_Del p.T2022Hfs*16 0.36 TCGA-EE-A2GO-06 15 52521417 52521417 C T MYO5C Silent p.K1040K 0.45 TCGA-EE-A2GO-06 15 54542502 54542502 G A UNC13C Nonsense_Mutation p.W1103* 0.23 TCGA-EE-A2GO-06 15 55497669 55497669 G A RAB27A 3'UTR 0.51 TCGA-EE-A2GO-06 15 56207725 56207725 G A NEDD4 Silent p.I435I 0.40 TCGA-EE-A2GO-06 15 56923869 56923869 G A ZNF280D Missense_Mutation p.P923S 0.46 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2GO-06 15 57356002 57356002 C T TCF12 Missense_Mutation p.P68L 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 15 57809019 57809019 A G CGNL1 Silent p.Q815Q 0.34 TCGA-EE-A2GO-06 15 57929947 57929947 G A GCOM1 Missense_Mutation p.E330K 0.24 tolerated(0.35) benign(0.281) TCGA-EE-A2GO-06 15 58467233 58467233 C T AQP9 Nonsense_Mutation p.Q165* 0.11 TCGA-EE-A2GO-06 15 62212401 62212401 G A VPS13C Missense_Mutation p.P2448S 0.17 tolerated(0.19) benign(0.007) TCGA-EE-A2GO-06 15 62228916 62228916 T A VPS13C Missense_Mutation p.M1879L 0.33 tolerated(1) benign(0.002) TCGA-EE-A2GO-06 15 63958636 63958636 G A HERC1 Missense_Mutation p.P2748S 0.43 probably_damaging(0.998) TCGA-EE-A2GO-06 15 64163137 64163137 G A MIR422A RNA 0.55 TCGA-EE-A2GO-06 15 65112061 65112061 G A PIF1 Missense_Mutation p.L440F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 15 65871822 65871822 G A VWA9 Missense_Mutation p.S437F 0.46 tolerated(0.16) possibly_damaging(0.667) TCGA-EE-A2GO-06 15 72643466 72643466 G A HEXA Intron 0.41 TCGA-EE-A2GO-06 15 74032633 74032633 G A C15orf59 Silent p.P169P 0.45 TCGA-EE-A2GO-06 15 74174023 74174023 C T TBC1D21 Silent p.F69F 0.35 TCGA-EE-A2GO-06 15 74174024 74174024 C T TBC1D21 Missense_Mutation p.L70F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 15 74473122 74473122 C T STRA6 Splice_Site p.X653_splice 0.34 TCGA-EE-A2GO-06 15 74473123 74473123 C T STRA6 Missense_Mutation p.G653R 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 15 75674004 75674004 C T SIN3A Missense_Mutation p.E1080K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 15 78466767 78466767 C T ACSBG1 Missense_Mutation p.G601E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 15 78473139 78473139 G A ACSBG1 Missense_Mutation p.A404V 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 15 79056038 79056038 C T ADAMTS7 Intron 0.20 TCGA-EE-A2GO-06 15 79059036 79059036 G A ADAMTS7 Missense_Mutation p.H1073Y 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GO-06 15 81582851 81582851 G A IL16 Missense_Mutation p.G464R 0.47 tolerated(0.28) possibly_damaging(0.729) TCGA-EE-A2GO-06 15 81582852 81582852 G A IL16 Missense_Mutation p.G464E 0.47 tolerated(0.34) possibly_damaging(0.493) TCGA-EE-A2GO-06 15 83437733 83437733 C T FSD2 Silent p.E484E 0.46 TCGA-EE-A2GO-06 15 83932835 83932835 C T BNC1 Missense_Mutation p.E390K 0.48 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GO-06 15 84683336 84683336 C T ADAMTSL3 Missense_Mutation p.S1339F 0.38 tolerated(0.07) benign(0.078) TCGA-EE-A2GO-06 15 85370798 85370798 C T ALPK3 Missense_Mutation p.S291F 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2GO-06 15 89381934 89381934 C T ACAN Silent p.S37S 0.19 TCGA-EE-A2GO-06 15 89381985 89381985 C T ACAN Silent p.I54I 0.22 TCGA-EE-A2GO-06 15 89414673 89414673 C T ACAN Missense_Mutation p.P2336L 0.36 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A2GO-06 15 90126082 90126082 C T TICRR Missense_Mutation p.P274S 0.43 tolerated(0.4) benign(0.046) TCGA-EE-A2GO-06 15 90902176 90902176 G A ZNF774 Silent p.R66R 0.35 TCGA-EE-A2GO-06 15 93588441 93588441 G A RGMA Silent p.F388F 0.54 TCGA-EE-A2GO-06 15 95013640 95013640 C T MCTP2 Silent p.F813F 0.32 TCGA-EE-A2GO-06 15 97328248 97328248 G A SPATA8 Silent p.R73R 0.46 TCGA-EE-A2GO-06 16 1265076 1265076 G A CACNA1H Silent p.K1678K 0.79 TCGA-EE-A2GO-06 16 1268001 1268001 C T CACNA1H Silent p.F1802F 0.40 TCGA-EE-A2GO-06 16 1268002 1268002 C T CACNA1H Missense_Mutation p.R1803C 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 16 1270151 1270151 C T CACNA1H Silent p.T2073T 0.60 TCGA-EE-A2GO-06 16 1370563 1370563 C T UBE2I Intron 0.47 TCGA-EE-A2GO-06 16 14038672 14038672 C T ERCC4 Missense_Mutation p.S666F 0.43 deleterious(0.04) benign(0.057) TCGA-EE-A2GO-06 16 15023257 15023257 G A RP11-958N24.1 RNA 0.35 TCGA-EE-A2GO-06 16 16138457 16138457 C T ABCC1 Silent p.T320T 0.34 TCGA-EE-A2GO-06 16 16205301 16205301 C A ABCC1 Missense_Mutation p.L981I 0.37 tolerated(0.05) possibly_damaging(0.85) TCGA-EE-A2GO-06 16 16297344 16297344 G A ABCC6 Silent p.F307F 0.36 TCGA-EE-A2GO-06 16 1633346 1633346 G A IFT140 Silent p.F467F 0.42 TCGA-EE-A2GO-06 16 1812892 1812892 C T MAPK8IP3 Missense_Mutation p.P594S 0.58 tolerated(0.12) benign(0.043) TCGA-EE-A2GO-06 16 1822335 1822335 C T MRPS34 Missense_Mutation p.G182R 0.19 deleterious(0.01) benign(0.356) TCGA-EE-A2GO-06 16 18549918 18549918 G A NOMO2 Missense_Mutation p.L384F 0.35 deleterious(0.04) possibly_damaging(0.548) TCGA-EE-A2GO-06 16 19452047 19452047 G A TMC5 Silent p.E229E 0.51 TCGA-EE-A2GO-06 16 20442540 20442540 A G ACSM5 Splice_Site p.X403_splice 0.37 TCGA-EE-A2GO-06 16 20638577 20638577 C T ACSM1 Missense_Mutation p.G454D 0.19 deleterious(0) probably_damaging(0.923) TCGA-EE-A2GO-06 16 20693667 20693667 G A ACSM1 Silent p.S174S 0.70 TCGA-EE-A2GO-06 16 20974681 20974681 G A DNAH3 Nonsense_Mutation p.Q3509* 0.24 TCGA-EE-A2GO-06 16 20994187 20994187 G A DNAH3 Missense_Mutation p.A2572V 0.26 deleterious(0.01) possibly_damaging(0.457) TCGA-EE-A2GO-06 16 21031095 21031095 G A DNAH3 Missense_Mutation p.S1958F 0.40 deleterious(0.01) possibly_damaging(0.738) TCGA-EE-A2GO-06 16 21123095 21123095 C T DNAH3 Missense_Mutation p.E651K 0.25 deleterious(0.04) benign(0.072) TCGA-EE-A2GO-06 16 2147915 2147915 G A PKD1 Missense_Mutation p.S3374F 0.12 possibly_damaging(0.812) TCGA-EE-A2GO-06 16 21709178 21709178 G A OTOA Silent p.T274T 0.34 TCGA-EE-A2GO-06 16 21739615 21739615 T C OTOA Silent p.C690C 0.58 TCGA-EE-A2GO-06 16 22237185 22237185 C T EEF2K Silent p.D45D 0.33 TCGA-EE-A2GO-06 16 22337387 22337387 G A POLR3E Missense_Mutation p.G552S 0.48 tolerated_low_confidence(0.09) benign(0.063) TCGA-EE-A2GO-06 16 23226629 23226629 G A SCNN1G Missense_Mutation p.D597N 0.39 tolerated(0.34) benign(0.001) TCGA-EE-A2GO-06 16 2333216 2333216 G A ABCA3 Missense_Mutation p.L1336F 0.22 tolerated(0.68) benign(0.002) TCGA-EE-A2GO-06 16 2333217 2333217 G A ABCA3 Silent p.I1335I 0.22 TCGA-EE-A2GO-06 16 23366789 23366789 G A SCNN1B Missense_Mutation p.G252E 0.25 deleterious(0.04) probably_damaging(0.969) TCGA-EE-A2GO-06 16 23713529 23713529 C T ERN2 Missense_Mutation p.G431R 0.61 tolerated(0.44) benign(0.009) TCGA-EE-A2GO-06 16 24816999 24816999 C T TNRC6A Missense_Mutation p.A1399V 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GO-06 16 25251426 25251426 G A ZKSCAN2 Missense_Mutation p.S872F 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 16 25251721 25251721 G A ZKSCAN2 Missense_Mutation p.P774S 0.17 deleterious(0.04) benign(0.006) TCGA-EE-A2GO-06 16 26147076 26147076 G A HS3ST4 Missense_Mutation p.R293K 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 16 26147274 26147274 G A HS3ST4 Missense_Mutation p.R359Q 0.36 deleterious(0.01) possibly_damaging(0.473) TCGA-EE-A2GO-06 16 27459883 27459883 C T IL21R Missense_Mutation p.S299F 0.28 deleterious(0.02) benign(0.21) TCGA-EE-A2GO-06 16 27475728 27475728 G A GTF3C1 Nonsense_Mutation p.Q1929* 0.35 TCGA-EE-A2GO-06 16 28883219 28883219 C T SH2B1 Silent p.I476I 0.52 TCGA-EE-A2GO-06 16 28913328 28913328 G A ATP2A1 Missense_Mutation p.E749K 0.23 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 16 28967337 28967337 G A NFATC2IP Missense_Mutation p.R206K 0.62 tolerated(0.27) probably_damaging(0.99) TCGA-EE-A2GO-06 16 29088013 29088013 C T RRN3P2 RNA 0.34 TCGA-EE-A2GO-06 16 30616651 30616651 G A ZNF689 Missense_Mutation p.S146F 0.33 tolerated(0.17) benign(0.159) TCGA-EE-A2GO-06 16 30995371 30995371 C T SETD1A 3'UTR 0.32 TCGA-EE-A2GO-06 16 3117475 3117475 C T IL32 Intron 0.28 TCGA-EE-A2GO-06 16 31194048 31194049 - T FUS Intron 0.18 TCGA-EE-A2GO-06 16 31273024 31273024 T A ITGAM Missense_Mutation p.C14S 0.42 tolerated(0.3) probably_damaging(0.999) TCGA-EE-A2GO-06 16 31283225 31283225 C T ITGAM Nonsense_Mutation p.Q206* 0.14 TCGA-EE-A2GO-06 16 31391671 31391671 G A ITGAX Missense_Mutation p.G1049S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 16 3142599 3142599 C T ZSCAN10 Missense_Mutation p.E59K 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 16 3142600 3142600 C T ZSCAN10 Silent p.E58E 0.62 TCGA-EE-A2GO-06 16 32890988 32890988 G A SLC6A10P RNA 0.37 TCGA-EE-A2GO-06 16 3293268 3293268 A C MEFV Missense_Mutation p.I740S 0.28 deleterious(0.03) probably_damaging(0.939) TCGA-EE-A2GO-06 16 335682 335682 A G PDIA2 Silent p.A366A 0.18 TCGA-EE-A2GO-06 16 33647267 33647267 A T RP11-812E19.9 Silent p.A111A 0.28 TCGA-EE-A2GO-06 16 3406252 3406252 C T OR2C1 Silent p.F104F 0.53 TCGA-EE-A2GO-06 16 3614227 3614227 C T NLRC3 Silent p.T284T 0.15 TCGA-EE-A2GO-06 16 421951 421951 G A TMEM8A 3'UTR 0.48 TCGA-EE-A2GO-06 16 427075 427075 G A TMEM8A Silent p.P199P 0.23 TCGA-EE-A2GO-06 16 4493042 4493042 G T DNAJA3 Missense_Mutation p.V270L 0.47 tolerated(0.07) possibly_damaging(0.859) TCGA-EE-A2GO-06 16 46617489 46617489 A C SHCBP1 Silent p.V544V 0.32 TCGA-EE-A2GO-06 16 4723500 4723500 C T MGRN1 Missense_Mutation p.P266L 0.30 tolerated(0.13) probably_damaging(0.944) TCGA-EE-A2GO-06 16 4731634 4731634 C T MGRN1 Silent p.I405I 0.41 TCGA-EE-A2GO-06 16 4812659 4812659 C A ZNF500 Missense_Mutation p.E171D 0.32 tolerated(0.23) benign(0.131) TCGA-EE-A2GO-06 16 4815779 4815779 G A ZNF500 Silent p.A67A 0.43 TCGA-EE-A2GO-06 16 49672682 49672682 G A ZNF423 Silent p.L127L 0.28 TCGA-EE-A2GO-06 16 50339721 50339721 C T ADCY7 Silent p.T571T 0.36 TCGA-EE-A2GO-06 16 50745620 50745620 G A NOD2 Missense_Mutation p.E600K 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 16 5115949 5115949 C T C16orf89 5'UTR 0.33 TCGA-EE-A2GO-06 16 55853480 55853480 C T CES1 Silent p.T291T 0.23 TCGA-EE-A2GO-06 16 55886903 55886903 T G CES5A Missense_Mutation p.E417A 0.68 deleterious(0.01) possibly_damaging(0.755) TCGA-EE-A2GO-06 16 55893498 55893498 G A CES5A Silent p.I368I 0.52 TCGA-EE-A2GO-06 16 56599053 56599053 G A MT4 Missense_Mutation p.E5K 0.58 tolerated_low_confidence(0.25) possibly_damaging(0.621) TCGA-EE-A2GO-06 16 56642584 56642584 C A MT2A Missense_Mutation p.S6Y 0.30 deleterious(0.01) possibly_damaging(0.86) TCGA-EE-A2GO-06 16 56904075 56904075 C T SLC12A3 Silent p.F223F 0.18 TCGA-EE-A2GO-06 16 57054813 57054813 C T NLRC5 Silent p.V63V 0.59 TCGA-EE-A2GO-06 16 57054814 57054814 C T NLRC5 Nonsense_Mutation p.Q64* 0.56 TCGA-EE-A2GO-06 16 57099124 57099124 G A NLRC5 Silent p.R1385R 0.26 TCGA-EE-A2GO-06 16 57099125 57099125 G A NLRC5 Missense_Mutation p.V1386M 0.26 deleterious(0) possibly_damaging(0.718) TCGA-EE-A2GO-06 16 58314308 58314308 C T PRSS54 Silent p.R336R 0.18 TCGA-EE-A2GO-06 16 58710242 58710242 G A SLC38A7 Missense_Mutation p.S240F 0.57 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GO-06 16 628806 628806 C T PIGQ Missense_Mutation p.P364L 0.12 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A2GO-06 16 64981872 64981872 G A CDH11 Silent p.A675A 0.55 TCGA-EE-A2GO-06 16 66545952 66545952 G A TK2 Silent p.H239H 0.23 TCGA-EE-A2GO-06 16 67006591 67006591 G A CES3 Missense_Mutation p.E488K 0.38 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A2GO-06 16 67038014 67038014 G A CES4A Missense_Mutation p.D323N 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 16 67681016 67681016 C T RLTPR Intron 0.30 TCGA-EE-A2GO-06 16 67914078 67914078 C T EDC4 Missense_Mutation p.P686S 0.23 tolerated(0.8) benign(0.343) TCGA-EE-A2GO-06 16 68056962 68056962 C T DDX28 Silent p.Q48Q 0.21 TCGA-EE-A2GO-06 16 68405008 68405008 G A SMPD3 Silent p.F359F 0.14 TCGA-EE-A2GO-06 16 69177168 69177168 C T CIRH1A Missense_Mutation p.S205F 0.36 deleterious(0) probably_damaging(0.947) TCGA-EE-A2GO-06 16 69782187 69782187 T G NOB1 Missense_Mutation p.M258L 0.55 tolerated(0.25) benign(0.002) TCGA-EE-A2GO-06 16 70417114 70417114 G A ST3GAL2 Silent p.F246F 0.36 TCGA-EE-A2GO-06 16 70428923 70428923 G C ST3GAL2 Silent p.G165G 0.21 TCGA-EE-A2GO-06 16 70557456 70557456 C T COG4 5'UTR 0.31 TCGA-EE-A2GO-06 16 70954829 70954829 G A HYDIN Missense_Mutation p.P2484S 0.33 benign(0.056) TCGA-EE-A2GO-06 16 71054098 71054098 G A HYDIN Silent p.S1103S 0.43 TCGA-EE-A2GO-06 16 71103246 71103246 G A HYDIN Missense_Mutation p.S633F 0.50 benign(0.089) TCGA-EE-A2GO-06 16 71218783 71218783 T A HYDIN Missense_Mutation p.E82D 0.64 possibly_damaging(0.714) TCGA-EE-A2GO-06 16 71571108 71571108 C T CHST4 Silent p.L176L 0.22 TCGA-EE-A2GO-06 16 71674495 71674495 G A MARVELD3 Silent p.L266L 0.42 TCGA-EE-A2GO-06 16 71715668 71715668 G A PHLPP2 Silent p.L292L 0.43 TCGA-EE-A2GO-06 16 72153661 72153661 G A PMFBP1 Intron 0.48 TCGA-EE-A2GO-06 16 72993646 72993646 G A ZFHX3 Silent p.I133I 0.35 TCGA-EE-A2GO-06 16 737365 737365 C T WDR24 Missense_Mutation p.M237I 0.49 tolerated(0.27) benign(0.001) TCGA-EE-A2GO-06 16 74922108 74922108 G A WDR59 Missense_Mutation p.P769S 0.35 tolerated(0.43) benign(0.02) TCGA-EE-A2GO-06 16 76592391 76592391 G A CNTNAP4 Silent p.L1173L 0.17 TCGA-EE-A2GO-06 16 77859274 77859274 C T VAT1L Silent p.F165F 0.14 TCGA-EE-A2GO-06 16 81198272 81198272 C T PKD1L2 RNA 0.48 TCGA-EE-A2GO-06 16 81241152 81241152 G A PKD1L2 Silent p.N283N 0.23 TCGA-EE-A2GO-06 16 812709 812709 T C MSLN Missense_Mutation p.L10S 0.39 tolerated(0.08) benign(0.026) TCGA-EE-A2GO-06 16 81303980 81303980 C T BCMO1 Missense_Mutation p.P354S 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2GO-06 16 816368 816368 C T MSLN Nonsense_Mutation p.Q370* 0.61 TCGA-EE-A2GO-06 16 84229035 84229035 C T ADAD2 Silent p.A371A 0.42 TCGA-EE-A2GO-06 16 84256268 84256268 C T KCNG4 Missense_Mutation p.G372D 0.30 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GO-06 16 84271028 84271028 G A KCNG4 Missense_Mutation p.P22S 0.43 tolerated_low_confidence(0.49) benign(0.021) TCGA-EE-A2GO-06 16 84888359 84888359 C T CRISPLD2 Silent p.P211P 0.30 TCGA-EE-A2GO-06 16 85813389 85813389 G A EMC8 Silent p.F186F 0.63 TCGA-EE-A2GO-06 16 86613236 86613236 A T FOXL1 Missense_Mutation p.S303C 0.64 tolerated(0.05) benign(0.439) TCGA-EE-A2GO-06 16 87445448 87445448 G A ZCCHC14 Missense_Mutation p.P823L 0.29 deleterious(0) unknown(0) TCGA-EE-A2GO-06 16 8873393 8873393 G A ABAT Missense_Mutation p.D443N 0.49 tolerated(0.4) possibly_damaging(0.712) TCGA-EE-A2GO-06 16 88902217 88902217 G A GALNS Missense_Mutation p.P225L 0.51 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GO-06 16 89351091 89351091 G A ANKRD11 Missense_Mutation p.P620L 0.27 benign(0.127) TCGA-EE-A2GO-06 16 89351548 89351548 G A ANKRD11 Missense_Mutation p.R468C 0.53 probably_damaging(0.973) TCGA-EE-A2GO-06 16 89704247 89704247 C T DPEP1 Silent p.V311V 0.28 TCGA-EE-A2GO-06 16 89925619 89925619 C G SPIRE2 Missense_Mutation p.S440C 0.36 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 17 10296300 10296300 C T MYH8 Missense_Mutation p.E1771K 0.28 deleterious(0.01) benign(0.077) TCGA-EE-A2GO-06 17 10296528 10296528 C T MYH8 Splice_Site p.X1723_splice 0.23 TCGA-EE-A2GO-06 17 10300222 10300222 C T MYH8 Silent p.T1420T 0.23 TCGA-EE-A2GO-06 17 10317725 10317725 G A MYH8 Silent p.S294S 0.43 TCGA-EE-A2GO-06 17 10399789 10399789 C T MYH1 Silent p.R1578R 0.34 TCGA-EE-A2GO-06 17 10408756 10408756 G A MYH1 Silent p.L749L 0.49 TCGA-EE-A2GO-06 17 10427136 10427136 C T MYH2 Missense_Mutation p.M1747I 0.32 tolerated(0.08) benign(0.003) TCGA-EE-A2GO-06 17 10432155 10432155 C T MYH2 Missense_Mutation p.R1199K 0.34 tolerated(0.14) probably_damaging(0.959) TCGA-EE-A2GO-06 17 10538190 10538190 G A MYH3 Silent p.A1441A 0.36 TCGA-EE-A2GO-06 17 10543369 10543369 C T MYH3 Missense_Mutation p.E876K 0.24 deleterious(0) benign(0.164) TCGA-EE-A2GO-06 17 10543976 10543976 G A MYH3 Silent p.I731I 0.72 TCGA-EE-A2GO-06 17 11568234 11568234 G A DNAH9 Missense_Mutation p.G894R 0.23 probably_damaging(0.993) TCGA-EE-A2GO-06 17 11603116 11603116 G A DNAH9 Silent p.G1647G 0.39 TCGA-EE-A2GO-06 17 11603117 11603117 G A DNAH9 Missense_Mutation p.E1648K 0.43 benign(0.002) TCGA-EE-A2GO-06 17 11648297 11648297 C T DNAH9 Missense_Mutation p.P2099S 0.29 probably_damaging(0.984) TCGA-EE-A2GO-06 17 11666863 11666863 G A DNAH9 Missense_Mutation p.E2368K 0.31 benign(0.051) TCGA-EE-A2GO-06 17 11671833 11671833 C T DNAH9 Missense_Mutation p.P2412S 0.37 probably_damaging(0.978) TCGA-EE-A2GO-06 17 13972898 13972898 G A COX10 5'UTR 0.27 TCGA-EE-A2GO-06 17 14140101 14140101 C T CDRT15 Missense_Mutation p.G17E 0.26 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A2GO-06 17 15222412 15222412 T C TEKT3 Missense_Mutation p.K239R 0.53 tolerated(1) benign(0.006) TCGA-EE-A2GO-06 17 15496731 15496731 G A CDRT1 Silent p.F642F 0.30 TCGA-EE-A2GO-06 17 16342727 16342727 G A TRPV2 3'Flank 0.30 TCGA-EE-A2GO-06 17 16342728 16342728 G A TRPV2 3'Flank 0.28 TCGA-EE-A2GO-06 17 16842955 16842955 G A TNFRSF13B Missense_Mutation p.T263I 0.19 tolerated(0.19) benign(0.067) TCGA-EE-A2GO-06 17 1703600 1703600 A C SMYD4 Missense_Mutation p.V363G 0.19 deleterious(0.03) benign(0.236) TCGA-EE-A2GO-06 17 17122419 17122419 G A FLCN Missense_Mutation p.P326S 0.58 tolerated(0.87) benign(0.001) TCGA-EE-A2GO-06 17 17707084 17707084 C A RAI1 Nonsense_Mutation p.C1860* 0.22 TCGA-EE-A2GO-06 17 17723568 17723568 G A SREBF1 Missense_Mutation p.P150L 0.28 deleterious(0.04) possibly_damaging(0.798) TCGA-EE-A2GO-06 17 17880955 17880955 G A LRRC48 Missense_Mutation p.D15N 0.28 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A2GO-06 17 17968607 17968607 C T GID4 3'UTR 0.40 TCGA-EE-A2GO-06 17 18027860 18027860 G A MYO15A Missense_Mutation p.E1225K 0.12 unknown(0) TCGA-EE-A2GO-06 17 18284800 18284800 G A EVPLL Silent p.R61R 0.48 TCGA-EE-A2GO-06 17 18661722 18661722 C T FBXW10 Missense_Mutation p.P446L 0.18 tolerated(0.05) probably_damaging(1) TCGA-EE-A2GO-06 17 19317456 19317456 G A RNF112 Missense_Mutation p.E292K 0.27 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 17 21147522 21147522 G A C17orf103 Missense_Mutation p.A40V 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 17 2290772 2290772 A G MNT Missense_Mutation p.L391P 0.28 tolerated(0.15) unknown(0) TCGA-EE-A2GO-06 17 2310391 2310391 C T AC006435.1 Silent p.K127K 0.57 TCGA-EE-A2GO-06 17 25934966 25934966 C T KSR1 Missense_Mutation p.S559L 0.42 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 17 26370197 26370197 G A NLK Missense_Mutation p.G100R 0.20 tolerated(0.06) benign(0.255) TCGA-EE-A2GO-06 17 28791734 28791734 C T CPD Missense_Mutation p.R1349C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GO-06 17 28886631 28886631 C T TBC1D29 5'UTR 0.25 TCGA-EE-A2GO-06 17 29283462 29283462 C T ADAP2 Silent p.S362S 0.29 TCGA-EE-A2GO-06 17 29283463 29283463 C T ADAP2 Missense_Mutation p.P363S 0.29 deleterious(0.03) benign(0.338) TCGA-EE-A2GO-06 17 29556425 29556425 C T NF1 Missense_Mutation p.P931L 0.52 deleterious(0) benign(0.244) TCGA-EE-A2GO-06 17 2996030 2996030 G A OR1D2 Silent p.S87S 0.32 TCGA-EE-A2GO-06 17 3181518 3181518 G A OR3A2 Missense_Mutation p.R238C 0.23 deleterious(0.04) benign(0.102) TCGA-EE-A2GO-06 17 3301037 3301037 G A OR1E1 Missense_Mutation p.S223F 0.21 tolerated(0.44) benign(0.05) TCGA-EE-A2GO-06 17 33482456 33482456 C T UNC45B Nonsense_Mutation p.R261* 0.20 TCGA-EE-A2GO-06 17 33520778 33520778 C T SLC35G3 Silent p.G183G 0.61 TCGA-EE-A2GO-06 17 33521049 33521049 G A SLC35G3 Missense_Mutation p.P93L 0.61 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 17 3352263 3352263 T A SPATA22 Missense_Mutation p.K170N 0.31 tolerated(0.49) benign(0.234) TCGA-EE-A2GO-06 17 34068210 34068210 C T RASL10B Silent p.I166I 0.31 TCGA-EE-A2GO-06 17 34073196 34073196 G A GAS2L2 Silent p.L440L 0.24 TCGA-EE-A2GO-06 17 34169391 34169391 A G TAF15 Missense_Mutation p.I312V 0.63 tolerated_low_confidence(0.39) benign(0.055) TCGA-EE-A2GO-06 17 3477043 3477043 G A SHPK Silent p.L663L 0.25 TCGA-EE-A2GO-06 17 35518742 35518742 G A ACACA Missense_Mutation p.R1768C 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GO-06 17 36061037 36061037 C T HNF1B Missense_Mutation p.M495I 0.37 tolerated(0.19) benign(0.021) TCGA-EE-A2GO-06 17 3628186 3628186 C T GSG2 Silent p.P319P 0.57 TCGA-EE-A2GO-06 17 36483548 36483548 G A GPR179 Silent p.S1968S 0.31 TCGA-EE-A2GO-06 17 36483549 36483549 G A GPR179 Missense_Mutation p.S1968F 0.31 tolerated(0.32) benign(0.015) TCGA-EE-A2GO-06 17 37094849 37094849 T A FBXO47 Missense_Mutation p.E407V 0.31 deleterious(0) benign(0.332) TCGA-EE-A2GO-06 17 37343112 37343112 G A CACNB1 Missense_Mutation p.P162L 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 17 37818594 37818594 C T STARD3 Silent p.L410L 0.35 TCGA-EE-A2GO-06 17 37824853 37824853 C T PNMT Missense_Mutation p.P42L 0.39 tolerated(0.64) probably_damaging(1) TCGA-EE-A2GO-06 17 38172855 38172855 G T CSF3 Missense_Mutation p.A144S 0.32 tolerated(0.43) benign(0.071) TCGA-EE-A2GO-06 17 38173074 38173074 C T CSF3 Silent p.A162A 0.26 TCGA-EE-A2GO-06 17 38420864 38420864 C T WIPF2 Missense_Mutation p.P146S 0.52 tolerated(0.19) possibly_damaging(0.493) TCGA-EE-A2GO-06 17 38508718 38508718 G A RARA Missense_Mutation p.D256N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 17 38572723 38572723 C T TOP2A Silent p.R73R 0.30 TCGA-EE-A2GO-06 17 38907519 38907519 G A KRT25 Silent p.A243A 0.33 TCGA-EE-A2GO-06 17 38949420 38949420 C T KRT28 Silent p.G413G 0.16 TCGA-EE-A2GO-06 17 39134399 39134399 C T KRT40 3'UTR 0.21 TCGA-EE-A2GO-06 17 39471643 39471643 C T KRTAP17-1 Missense_Mutation p.G87D 0.29 unknown(0) TCGA-EE-A2GO-06 17 39525715 39525715 C T KRT33B Silent p.E96E 0.65 TCGA-EE-A2GO-06 17 39578654 39578654 C T KRT37 Silent p.E255E 0.34 TCGA-EE-A2GO-06 17 39580697 39580697 G A KRT37 Missense_Mutation p.P27S 0.29 tolerated(1) benign(0) TCGA-EE-A2GO-06 17 39619158 39619158 C T KRT32 Missense_Mutation p.V381M 0.25 deleterious(0.02) benign(0.167) TCGA-EE-A2GO-06 17 39645937 39645937 C T KRT36 Silent p.G60G 0.17 TCGA-EE-A2GO-06 17 39659198 39659198 G A KRT13 Silent p.F296F 0.61 TCGA-EE-A2GO-06 17 39673111 39673111 C T KRT15 Silent p.Q229Q 0.27 TCGA-EE-A2GO-06 17 39923829 39923829 G A JUP Silent p.S237S 0.26 TCGA-EE-A2GO-06 17 39927994 39927994 C T JUP Missense_Mutation p.S38N 0.25 tolerated(0.11) benign(0) TCGA-EE-A2GO-06 17 40004384 40004384 C T KLHL10 Missense_Mutation p.T551I 0.22 deleterious(0) possibly_damaging(0.836) TCGA-EE-A2GO-06 17 40314292 40314292 C T KCNH4 Missense_Mutation p.E878K 0.41 tolerated(0.07) benign(0.11) TCGA-EE-A2GO-06 17 40556697 40556697 G A PTRF 3'UTR 0.50 TCGA-EE-A2GO-06 17 40653289 40653289 C T ATP6V0A1 Silent p.V664V 0.24 TCGA-EE-A2GO-06 17 40817554 40817554 C T TUBG2 Missense_Mutation p.P223S 0.23 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2GO-06 17 40831617 40831617 G A CCR10 Missense_Mutation p.S348F 0.33 deleterious(0.05) possibly_damaging(0.603) TCGA-EE-A2GO-06 17 40966012 40966012 G A BECN1 Missense_Mutation p.P332L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 17 44049246 44049246 C T MAPT Missense_Mutation p.T52I 0.27 deleterious(0.02) benign(0.01) TCGA-EE-A2GO-06 17 45451971 45451971 G A EFCAB13 Silent p.K337K 0.60 TCGA-EE-A2GO-06 17 4576309 4576309 G A PELP1 Silent p.P659P 0.27 TCGA-EE-A2GO-06 17 4578109 4578109 G A PELP1 Missense_Mutation p.L473F 0.26 probably_damaging(0.986) TCGA-EE-A2GO-06 17 45924778 45924778 T C SP6 Missense_Mutation p.K340E 0.30 tolerated(0.61) benign(0.066) TCGA-EE-A2GO-06 17 46024218 46024218 G A PNPO 3'UTR 0.20 TCGA-EE-A2GO-06 17 46233864 46233864 C T SKAP1 Intron 0.31 TCGA-EE-A2GO-06 17 46233865 46233865 C T SKAP1 Intron 0.31 TCGA-EE-A2GO-06 17 4623547 4623547 C T ARRB2 Silent p.I339I 0.24 TCGA-EE-A2GO-06 17 46607987 46607987 C T HOXB1 Missense_Mutation p.G94R 0.24 tolerated(0.06) possibly_damaging(0.835) TCGA-EE-A2GO-06 17 47243560 47243560 G A B4GALNT2 Missense_Mutation p.E407K 0.29 tolerated(0.86) benign(0.009) TCGA-EE-A2GO-06 17 47284153 47284153 G A GNGT2 Missense_Mutation p.P59L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 17 48264054 48264054 T C COL1A1 Missense_Mutation p.N1254S 0.69 unknown(0) TCGA-EE-A2GO-06 17 48447414 48447414 G A MRPL27 Silent p.F73F 0.30 TCGA-EE-A2GO-06 17 48551881 48551881 C T ACSF2 Nonsense_Mutation p.R606* 0.52 TCGA-EE-A2GO-06 17 48559708 48559708 C T RSAD1 Missense_Mutation p.A244V 0.54 tolerated(0.26) benign(0.003) TCGA-EE-A2GO-06 17 48559709 48559709 C T RSAD1 Silent p.A244A 0.55 TCGA-EE-A2GO-06 17 48601028 48601028 G A MYCBPAP Silent p.R549R 0.62 TCGA-EE-A2GO-06 17 48602369 48602369 G A MYCBPAP Silent p.R632R 0.29 TCGA-EE-A2GO-06 17 48704150 48704150 G A CACNA1G 3'UTR 0.24 TCGA-EE-A2GO-06 17 48755478 48755478 C T ABCC3 Silent p.F1201F 0.52 TCGA-EE-A2GO-06 17 48918360 48918360 G A WFIKKN2 Missense_Mutation p.E571K 0.28 deleterious(0.03) benign(0.16) TCGA-EE-A2GO-06 17 51900733 51900733 G A KIF2B Silent p.T113T 0.28 TCGA-EE-A2GO-06 17 51901924 51901924 G A KIF2B Silent p.Q510Q 0.18 TCGA-EE-A2GO-06 17 5425006 5425006 C T NLRP1 Silent p.L1207L 0.57 TCGA-EE-A2GO-06 17 5433988 5433988 G A NLRP1 Silent p.P1111P 0.29 TCGA-EE-A2GO-06 17 56565288 56565288 G A HSF5 Silent p.F116F 0.33 TCGA-EE-A2GO-06 17 57279046 57279046 A G PRR11 3'UTR 0.40 TCGA-EE-A2GO-06 17 57350190 57350190 G A GDPD1 Missense_Mutation p.G272D 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 17 57676800 57676800 C T DHX40 Missense_Mutation p.R588C 0.25 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2GO-06 17 58531794 58531794 G A APPBP2 Missense_Mutation p.L403F 0.31 tolerated(0.13) benign(0.212) TCGA-EE-A2GO-06 17 59853824 59853824 G A BRIP1 Missense_Mutation p.L679F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 17 60685476 60685476 C T TLK2 Silent p.F682F 0.29 TCGA-EE-A2GO-06 17 61558963 61558963 G A ACE Missense_Mutation p.E328K 0.31 tolerated(0.36) benign(0.1) TCGA-EE-A2GO-06 17 61994592 61994592 C T GH1 3'UTR 0.68 TCGA-EE-A2GO-06 17 62132154 62132154 A T ERN1 Silent p.I569I 0.46 TCGA-EE-A2GO-06 17 62461568 62461568 G A MILR1 5'Flank 0.42 TCGA-EE-A2GO-06 17 62579628 62579628 G A SMURF2 Nonsense_Mutation p.Q174* 0.30 TCGA-EE-A2GO-06 17 63206679 63206679 G A RGS9 Missense_Mutation p.E455K 0.27 deleterious(0.01) possibly_damaging(0.78) TCGA-EE-A2GO-06 17 64024479 64024479 T G CEP112 Missense_Mutation p.L516F 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2GO-06 17 64210719 64210719 C T APOH Silent p.E278E 0.19 TCGA-EE-A2GO-06 17 64210721 64210721 C A APOH Nonsense_Mutation p.E278* 0.22 TCGA-EE-A2GO-06 17 64728899 64728899 G A PRKCA Missense_Mutation p.D338N 0.36 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2GO-06 17 6913638 6913638 G A ALOX12 Missense_Mutation p.D630N 0.29 tolerated(0.36) possibly_damaging(0.826) TCGA-EE-A2GO-06 17 71165805 71165805 G A SSTR2 Missense_Mutation p.R116Q 0.57 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A2GO-06 17 71165806 71165806 G A SSTR2 Silent p.R116R 0.55 TCGA-EE-A2GO-06 17 71361453 71361453 G A SDK2 Missense_Mutation p.P1750L 0.33 deleterious(0.02) probably_damaging(0.938) TCGA-EE-A2GO-06 17 72352879 72352879 A T BTBD17 Missense_Mutation p.S452T 0.61 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 17 72522185 72522185 C T CD300LB Silent p.V61V 0.38 TCGA-EE-A2GO-06 17 72613448 72613448 C T CD300E Missense_Mutation p.G66E 0.55 tolerated(0.25) possibly_damaging(0.697) TCGA-EE-A2GO-06 17 72613449 72613449 C T CD300E Missense_Mutation p.G66R 0.54 deleterious(0.04) possibly_damaging(0.546) TCGA-EE-A2GO-06 17 72739288 72739288 G A RAB37 Silent p.Q94Q 0.34 TCGA-EE-A2GO-06 17 72741340 72741340 C T RAB37 Intron 0.38 TCGA-EE-A2GO-06 17 72926963 72926963 C T OTOP2 Silent p.I411I 0.62 TCGA-EE-A2GO-06 17 7296625 7296625 G A TMEM256-PLSCR3 Silent p.P115P 0.25 TCGA-EE-A2GO-06 17 73221904 73221904 G A NUP85 Missense_Mutation p.D323N 0.30 tolerated(0.08) benign(0.423) TCGA-EE-A2GO-06 17 73484956 73484956 C T KIAA0195 Silent p.F243F 0.51 TCGA-EE-A2GO-06 17 73520553 73520553 G A TSEN54 3'UTR 0.67 TCGA-EE-A2GO-06 17 73565333 73565333 C T LLGL2 Missense_Mutation p.P503L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 17 74740454 74740454 G A MFSD11 Missense_Mutation p.G183R 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 17 7476041 7476041 G A SENP3 3'Flank 0.23 TCGA-EE-A2GO-06 17 76046938 76046938 T C TNRC6C Missense_Mutation p.W599R 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GO-06 17 7630551 7630551 C T DNAH2 Missense_Mutation p.L114F 0.59 benign(0.236) TCGA-EE-A2GO-06 17 76440879 76440879 C T DNAH17 Missense_Mutation p.A3765T 0.20 benign(0.183) TCGA-EE-A2GO-06 17 76446440 76446440 C T DNAH17 Missense_Mutation p.E3632K 0.38 benign(0.118) TCGA-EE-A2GO-06 17 76565274 76565274 A G DNAH17 Missense_Mutation p.F420L 0.47 possibly_damaging(0.906) TCGA-EE-A2GO-06 17 77708958 77708958 G A ENPP7 Nonsense_Mutation p.W172* 0.32 TCGA-EE-A2GO-06 17 77807749 77807749 G A CBX4 3'UTR 0.32 TCGA-EE-A2GO-06 17 78704442 78704442 C T RPTOR Missense_Mutation p.S197F 0.34 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GO-06 17 79090085 79090085 C T BAIAP2 Missense_Mutation p.R547C 0.36 deleterious_low_confidence(0.02) benign(0.001) TCGA-EE-A2GO-06 17 7916509 7916509 C T GUCY2D Silent p.I734I 0.32 TCGA-EE-A2GO-06 17 79205749 79205749 G A ENTHD2 Missense_Mutation p.S200F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 17 79226219 79226219 G A SLC38A10 Missense_Mutation p.P574L 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2GO-06 17 79226220 79226220 G A SLC38A10 Missense_Mutation p.P574S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GO-06 17 79256043 79256043 G A SLC38A10 Silent p.S149S 0.22 TCGA-EE-A2GO-06 17 79256044 79256044 G A SLC38A10 Missense_Mutation p.S149F 0.21 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2GO-06 17 79405439 79405439 C T RP11-1055B8.7 Silent p.F134F 0.43 TCGA-EE-A2GO-06 17 79478941 79478941 C T ACTG1 Silent p.E117E 0.28 TCGA-EE-A2GO-06 17 79517434 79517434 G A C17orf70 Silent p.T362T 0.34 TCGA-EE-A2GO-06 17 79653362 79653362 C T HGS Missense_Mutation p.S48F 0.27 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2GO-06 17 80436782 80436782 C T NARF Silent p.F209F 0.71 TCGA-EE-A2GO-06 17 8166545 8166545 C T PFAS Missense_Mutation p.P510L 0.25 tolerated(0.06) probably_damaging(0.975) TCGA-EE-A2GO-06 17 9583586 9583586 G A USP43 Silent p.R336R 0.33 TCGA-EE-A2GO-06 18 14542941 14542941 A T POTEC Missense_Mutation p.F69I 0.15 deleterious_low_confidence(0) benign(0.307) TCGA-EE-A2GO-06 18 20572875 20572875 T A RBBP8 Missense_Mutation p.L362H 0.41 tolerated(0.19) benign(0.003) TCGA-EE-A2GO-06 18 21226157 21226157 C T ANKRD29 Missense_Mutation p.R76K 0.18 deleterious(0) possibly_damaging(0.877) TCGA-EE-A2GO-06 18 23713976 23713976 G A PSMA8 Missense_Mutation p.G16E 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 18 28609493 28609493 G A DSC3 Silent p.F152F 0.29 TCGA-EE-A2GO-06 18 28722032 28722032 C T DSC1 Missense_Mutation p.G397E 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 18 28934674 28934674 G A DSG1 Missense_Mutation p.E839K 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 18 29044140 29044140 C T DSG3 Missense_Mutation p.H356Y 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 18 29116337 29116337 C T DSG2 Silent p.S532S 0.23 TCGA-EE-A2GO-06 18 29848634 29848634 G A GAREM Missense_Mutation p.P611S 0.19 tolerated(0.12) benign(0.271) TCGA-EE-A2GO-06 18 3134808 3134808 G A MYOM1 Missense_Mutation p.P742S 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 18 32949371 32949371 G A ZNF396 Silent p.I272I 0.60 TCGA-EE-A2GO-06 18 33689570 33689570 G A SLC39A6 Missense_Mutation p.R752C 0.26 deleterious(0.01) possibly_damaging(0.719) TCGA-EE-A2GO-06 18 42532130 42532130 G A SETBP1 Missense_Mutation p.R942Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 18 43422083 43422083 G A SIGLEC15 Silent p.Q306Q 0.19 TCGA-EE-A2GO-06 18 43422084 43422084 G A SIGLEC15 Missense_Mutation p.E307K 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GO-06 18 43534629 43534629 G A EPG5 Missense_Mutation p.P247S 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A2GO-06 18 43535083 43535083 G A EPG5 Silent p.S95S 0.38 TCGA-EE-A2GO-06 18 44261991 44261991 C T ST8SIA5 Missense_Mutation p.M202I 0.14 benign(0.009) TCGA-EE-A2GO-06 18 44595626 44595626 G A KATNAL2 Nonsense_Mutation p.W215* 0.20 TCGA-EE-A2GO-06 18 51863607 51863607 C T STARD6 Missense_Mutation p.G52E 0.14 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GO-06 18 51886928 51886928 C T C18orf54 5'UTR 0.36 TCGA-EE-A2GO-06 18 52555245 52555245 T C RAB27B Silent p.A121A 0.25 TCGA-EE-A2GO-06 18 52899793 52899793 C T TCF4 Silent p.K634K 0.31 TCGA-EE-A2GO-06 18 5423519 5423519 G A EPB41L3 Silent p.F399F 0.20 TCGA-EE-A2GO-06 18 55027446 55027446 C T ST8SIA3 Nonsense_Mutation p.Q361* 0.39 TCGA-EE-A2GO-06 18 55335748 55335748 C G ATP8B1 Missense_Mutation p.D708H 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 18 55983259 55983259 C T NEDD4L Missense_Mutation p.L115F 0.28 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2GO-06 18 56054695 56054695 G A NEDD4L Missense_Mutation p.D838N 0.40 tolerated(0.48) probably_damaging(0.926) TCGA-EE-A2GO-06 18 56205027 56205027 T A ALPK2 Nonsense_Mutation p.R798* 0.63 TCGA-EE-A2GO-06 18 56279030 56279030 C T ALPK2 5'UTR 0.59 TCGA-EE-A2GO-06 18 56985680 56985680 C T CPLX4 Missense_Mutation p.M5I 0.32 tolerated(0.37) benign(0) TCGA-EE-A2GO-06 18 59221969 59221969 C T CDH20 3'UTR 0.33 TCGA-EE-A2GO-06 18 59483682 59483682 G A RNF152 Silent p.S5S 0.22 TCGA-EE-A2GO-06 18 61232780 61232780 G A SERPINB12 Missense_Mutation p.G250R 0.23 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A2GO-06 18 61377522 61377522 C T SERPINB11 Missense_Mutation p.S32L 0.50 deleterious(0.01) benign(0.005) TCGA-EE-A2GO-06 18 61654354 61654354 G A SERPINB8 Missense_Mutation p.E323K 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 18 63527017 63527017 C A CDH7 Missense_Mutation p.T523K 0.25 deleterious(0.04) benign(0.038) TCGA-EE-A2GO-06 18 6965357 6965357 G A LAMA1 Silent p.T2375T 0.71 TCGA-EE-A2GO-06 18 74593298 74593298 C T ZNF236 Missense_Mutation p.S414F 0.29 tolerated(0.06) benign(0.396) TCGA-EE-A2GO-06 18 76754601 76754601 G A SALL3 Silent p.G870G 0.15 TCGA-EE-A2GO-06 18 77896377 77896377 G A ADNP2 Silent p.E1027E 0.28 TCGA-EE-A2GO-06 18 7888235 7888235 C A PTPRM Missense_Mutation p.P110T 0.44 tolerated(0.08) benign(0.001) TCGA-EE-A2GO-06 18 9886232 9886232 G A TXNDC2 Missense_Mutation p.E21K 0.26 tolerated(0.38) benign(0.038) TCGA-EE-A2GO-06 19 10116264 10116264 C T COL5A3 Silent p.G188G 0.20 TCGA-EE-A2GO-06 19 10165958 10165958 G A C3P1 RNA 0.19 TCGA-EE-A2GO-06 19 10248603 10248603 G A DNMT1 Silent p.L1400L 0.50 TCGA-EE-A2GO-06 19 10270523 10270523 C T DNMT1 Missense_Mutation p.D389N 0.45 tolerated(0.15) benign(0.015) TCGA-EE-A2GO-06 19 1055316 1055316 C T ABCA7 Silent p.L1391L 0.26 TCGA-EE-A2GO-06 19 10568682 10568682 C T PDE4A Silent p.I335I 0.23 TCGA-EE-A2GO-06 19 1068553 1068553 C T HMHA1 Silent p.F93F 0.39 TCGA-EE-A2GO-06 19 1079801 1079801 C T HMHA1 Nonsense_Mutation p.Q508* 0.21 TCGA-EE-A2GO-06 19 10823850 10823850 C T QTRT1 Silent p.F372F 0.20 TCGA-EE-A2GO-06 19 11031382 11031382 C T CARM1 Missense_Mutation p.S461F 0.14 tolerated(0.53) benign(0.002) TCGA-EE-A2GO-06 19 11289126 11289126 G A KANK2 Missense_Mutation p.P480L 0.44 tolerated(0.18) benign(0.011) TCGA-EE-A2GO-06 19 11545849 11545849 G A CCDC151 5'UTR 0.33 TCGA-EE-A2GO-06 19 11687173 11687173 G A ACP5 Missense_Mutation p.P207L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 11796201 11796201 C T ZNF833P RNA 0.39 TCGA-EE-A2GO-06 19 11836079 11836079 G A ZNF823 Missense_Mutation p.P23S 0.28 tolerated(0.13) possibly_damaging(0.794) TCGA-EE-A2GO-06 19 12058372 12058372 C T ZNF700 Silent p.N78N 0.37 TCGA-EE-A2GO-06 19 12059149 12059149 T G ZNF700 Missense_Mutation p.F104V 0.17 tolerated(0.16) benign(0.032) TCGA-EE-A2GO-06 19 13325357 13325357 G A CACNA1A Silent p.L1933L 0.31 TCGA-EE-A2GO-06 19 13365996 13365996 G A CACNA1A Silent p.Y1556Y 0.23 TCGA-EE-A2GO-06 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.21 TCGA-EE-A2GO-06 19 13923946 13923946 C T ZSWIM4 Missense_Mutation p.P383L 0.09 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A2GO-06 19 14104454 14104454 G A RFX1 Missense_Mutation p.P68S 0.40 deleterious_low_confidence(0.01) benign(0.194) TCGA-EE-A2GO-06 19 15198154 15198154 C T OR1I1 Missense_Mutation p.P93L 0.47 deleterious(0.03) possibly_damaging(0.674) TCGA-EE-A2GO-06 19 15580475 15580475 C T PGLYRP2 Missense_Mutation p.D537N 0.45 tolerated(1) benign(0) TCGA-EE-A2GO-06 19 15587113 15587113 G A PGLYRP2 Missense_Mutation p.P123L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 15769552 15769552 C T CYP4F3 Missense_Mutation p.R444C 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2GO-06 19 15807286 15807286 C A CYP4F12 Nonsense_Mutation p.S454* 0.20 TCGA-EE-A2GO-06 19 15918158 15918158 A T OR10H1 Silent p.P230P 0.40 TCGA-EE-A2GO-06 19 16024710 16024710 G A CYP4F11 Silent p.I469I 0.35 TCGA-EE-A2GO-06 19 16301697 16301697 G A FAM32A Splice_Site p.X91_splice 0.42 TCGA-EE-A2GO-06 19 16301698 16301698 G A FAM32A Missense_Mutation p.D91N 0.42 tolerated(0.09) benign(0.041) TCGA-EE-A2GO-06 19 17311626 17311626 C T MYO9B Silent p.F1517F 0.22 TCGA-EE-A2GO-06 19 17988809 17988809 C T SLC5A5 Silent p.I292I 0.48 TCGA-EE-A2GO-06 19 1818751 1818751 G C REXO1 Silent p.P952P 0.46 TCGA-EE-A2GO-06 19 1827820 1827820 G A REXO1 Missense_Mutation p.S323F 0.35 deleterious(0.01) possibly_damaging(0.698) TCGA-EE-A2GO-06 19 18327613 18327613 C T PDE4C Missense_Mutation p.D475N 0.26 tolerated(0.05) benign(0.08) TCGA-EE-A2GO-06 19 18546081 18546081 G A ISYNA1 Silent p.I489I 0.26 TCGA-EE-A2GO-06 19 18960951 18960951 G A UPF1 Missense_Mutation p.G177R 0.38 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GO-06 19 19368513 19368513 G A HAPLN4 3'UTR 0.47 TCGA-EE-A2GO-06 19 19655218 19655218 C T CILP2 Missense_Mutation p.P622S 0.26 tolerated(0.87) benign(0.026) TCGA-EE-A2GO-06 19 19655219 19655219 C T CILP2 Missense_Mutation p.P622L 0.26 tolerated(0.12) possibly_damaging(0.632) TCGA-EE-A2GO-06 19 2037813 2037813 G A MKNK2 3'UTR 0.39 TCGA-EE-A2GO-06 19 20807869 20807869 G A ZNF626 Missense_Mutation p.L272F 0.30 tolerated(0.05) probably_damaging(0.989) TCGA-EE-A2GO-06 19 21476172 21476172 G A ZNF708 Silent p.Y532Y 0.32 TCGA-EE-A2GO-06 19 21476296 21476296 A G ZNF708 Missense_Mutation p.L491P 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 2217040 2217040 C T DOT1L Missense_Mutation p.P832L 0.16 deleterious_low_confidence(0.03) benign(0.009) TCGA-EE-A2GO-06 19 22940838 22940838 C T ZNF99 Missense_Mutation p.E625K 0.50 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A2GO-06 19 2987367 2987367 C T TLE6 Silent p.G185G 0.19 TCGA-EE-A2GO-06 19 3011136 3011136 G A TLE2 Missense_Mutation p.P299L 0.11 deleterious(0.01) benign(0.085) TCGA-EE-A2GO-06 19 3121077 3121077 A G GNA11 Missense_Mutation p.H327R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 3193407 3193407 C T NCLN Silent p.G167G 0.21 TCGA-EE-A2GO-06 19 3198862 3198862 C T NCLN Silent p.I221I 0.29 TCGA-EE-A2GO-06 19 34985526 34985526 C T WTIP Missense_Mutation p.P356L 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GO-06 19 3533377 3533377 C T FZR1 Missense_Mutation p.S443F 0.29 deleterious(0.03) benign(0.33) TCGA-EE-A2GO-06 19 35533359 35533359 C T HPN 5'UTR 0.67 TCGA-EE-A2GO-06 19 3620798 3620798 G A CACTIN Silent p.A215A 0.30 TCGA-EE-A2GO-06 19 36304130 36304130 C T PRODH2 Silent p.G18G 0.68 TCGA-EE-A2GO-06 19 3643270 3643270 G A PIP5K1C Silent p.P540P 0.35 TCGA-EE-A2GO-06 19 36884835 36884835 C T ZFP82 Missense_Mutation p.G136E 0.39 tolerated(0.41) benign(0.001) TCGA-EE-A2GO-06 19 3728613 3728613 G A TJP3 Silent p.R29R 0.33 TCGA-EE-A2GO-06 19 37368393 37368393 C T ZNF345 Missense_Mutation p.R221W 0.20 deleterious(0.01) possibly_damaging(0.821) TCGA-EE-A2GO-06 19 37870059 37870059 C T ZNF527 Missense_Mutation p.S24F 0.26 deleterious(0) possibly_damaging(0.678) TCGA-EE-A2GO-06 19 38089296 38089296 C T ZNF540 5'UTR 0.58 TCGA-EE-A2GO-06 19 3823358 3823358 C A ZFR2 Silent p.G419G 0.24 TCGA-EE-A2GO-06 19 38655330 38655330 C T SIPA1L3 Missense_Mutation p.P1331L 0.16 tolerated(0.2) benign(0.001) TCGA-EE-A2GO-06 19 38877615 38877615 G A GGN Missense_Mutation p.P96L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GO-06 19 38911767 38911767 C G RASGRP4 Silent p.P94P 0.53 TCGA-EE-A2GO-06 19 38937178 38937178 C T RYR1 Missense_Mutation p.S233F 0.21 probably_damaging(0.953) TCGA-EE-A2GO-06 19 38951024 38951024 C T RYR1 Silent p.F790F 0.58 TCGA-EE-A2GO-06 19 39233680 39233680 C T CAPN12 Silent p.G100G 0.24 TCGA-EE-A2GO-06 19 39281472 39281472 C T LGALS7B Missense_Mutation p.P80L 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 19 39303527 39303527 C T LGALS4 5'UTR 0.21 TCGA-EE-A2GO-06 19 39379775 39379775 G A SIRT2 Silent p.F151F 0.29 TCGA-EE-A2GO-06 19 39971411 39971411 C T TIMM50 Missense_Mutation p.P76L 0.50 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GO-06 19 40354435 40354435 C T FCGBP Missense_Mutation p.G5345E 0.33 probably_damaging(1) TCGA-EE-A2GO-06 19 40357524 40357524 G A FCGBP Silent p.S5263S 0.29 TCGA-EE-A2GO-06 19 40424273 40424273 C T FCGBP Missense_Mutation p.D644N 0.31 probably_damaging(0.985) TCGA-EE-A2GO-06 19 40434112 40434112 G A FCGBP Missense_Mutation p.P53S 0.29 benign(0.006) TCGA-EE-A2GO-06 19 40520495 40520495 C T ZNF546 Missense_Mutation p.P440S 0.48 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A2GO-06 19 41008319 41008319 G A SPTBN4 Missense_Mutation p.E370K 0.58 deleterious(0) possibly_damaging(0.459) TCGA-EE-A2GO-06 19 41522639 41522639 C T CYP2B6 Silent p.S461S 0.43 TCGA-EE-A2GO-06 19 41628753 41628753 C T CYP2F1 Silent p.F283F 0.24 TCGA-EE-A2GO-06 19 42091803 42091803 G A CEACAM21 Missense_Mutation p.D269N 0.28 tolerated(0.07) benign(0.001) TCGA-EE-A2GO-06 19 42729905 42729905 C T ZNF526 Silent p.S450S 0.29 TCGA-EE-A2GO-06 19 42848125 42848125 C T MEGF8 Missense_Mutation p.S563F 0.34 tolerated(0.69) benign(0.277) TCGA-EE-A2GO-06 19 43371803 43371803 G A PSG1 3'UTR 0.40 TCGA-EE-A2GO-06 19 43383756 43383756 T G PSG1 5'UTR 0.27 TCGA-EE-A2GO-06 19 43406441 43406441 A G PSG6 3'Flank 0.33 TCGA-EE-A2GO-06 19 4363408 4363408 G A SH3GL1 Silent p.A229A 0.39 TCGA-EE-A2GO-06 19 43709684 43709684 C T PSG4 Missense_Mutation p.G2E 0.42 tolerated(0.07) benign(0.141) TCGA-EE-A2GO-06 19 44223547 44223547 C T IRGC Silent p.A279A 0.66 TCGA-EE-A2GO-06 19 44681084 44681084 A G ZNF226 Missense_Mutation p.K557E 0.26 deleterious(0.02) probably_damaging(0.923) TCGA-EE-A2GO-06 19 44778448 44778448 T G ZNF233 Missense_Mutation p.F545L 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 19 4491791 4491791 C T HDGFRP2 Missense_Mutation p.R213W 0.46 deleterious(0) unknown(0) TCGA-EE-A2GO-06 19 45153184 45153184 C T PVR Silent p.I177I 0.29 TCGA-EE-A2GO-06 19 45209008 45209008 C T CEACAM16 Silent p.A270A 0.27 TCGA-EE-A2GO-06 19 45579360 45579360 C T ZNF296 Nonsense_Mutation p.W91* 0.56 TCGA-EE-A2GO-06 19 45668210 45668210 C T TRAPPC6A Silent p.L71L 0.54 TCGA-EE-A2GO-06 19 45768113 45768113 A T MARK4 Missense_Mutation p.Y146F 0.59 deleterious(0) benign(0.42) TCGA-EE-A2GO-06 19 45867710 45867710 G A ERCC2 Silent p.V230V 0.27 TCGA-EE-A2GO-06 19 46299058 46299058 C T RSPH6A 3'UTR 0.53 TCGA-EE-A2GO-06 19 46973353 46973353 C T PNMAL1 Missense_Mutation p.G314S 0.29 tolerated(0.45) probably_damaging(0.931) TCGA-EE-A2GO-06 19 46998300 46998300 C T PNMAL2 Silent p.G141G 0.28 TCGA-EE-A2GO-06 19 47548460 47548460 C T NPAS1 Missense_Mutation p.P442S 0.21 tolerated(0.09) benign(0.108) TCGA-EE-A2GO-06 19 47763960 47763960 C T CCDC9 Missense_Mutation p.S109L 0.28 deleterious(0.03) benign(0.266) TCGA-EE-A2GO-06 19 47823980 47823980 C T C5AR1 Missense_Mutation p.P316S 0.62 tolerated(0.15) possibly_damaging(0.776) TCGA-EE-A2GO-06 19 4793790 4793790 C T FEM1A Missense_Mutation p.L642F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 48282054 48282054 C A SEPW1 Silent p.A4A 0.59 TCGA-EE-A2GO-06 19 48342956 48342956 C T CRX Missense_Mutation p.P211L 0.26 deleterious(0.05) possibly_damaging(0.641) TCGA-EE-A2GO-06 19 48601455 48601455 G A PLA2G4C Missense_Mutation p.P180L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 48922858 48922858 C T GRIN2D Silent p.T626T 0.31 TCGA-EE-A2GO-06 19 49012131 49012131 G A LMTK3 Silent p.F207F 0.27 TCGA-EE-A2GO-06 19 49674906 49674906 C T TRPM4 Silent p.C310C 0.30 TCGA-EE-A2GO-06 19 49894097 49894097 G A CCDC155 5'UTR 0.26 TCGA-EE-A2GO-06 19 50150029 50150029 C T SCAF1 Silent p.I140I 0.69 TCGA-EE-A2GO-06 19 50154631 50154631 C T SCAF1 Missense_Mutation p.P329S 0.29 unknown(0) TCGA-EE-A2GO-06 19 50154632 50154632 C T SCAF1 Missense_Mutation p.P329L 0.27 unknown(0) TCGA-EE-A2GO-06 19 50169099 50169099 C T BCL2L12 Silent p.L7L 0.51 TCGA-EE-A2GO-06 19 50357780 50357780 G A PTOV1 Missense_Mutation p.G97S 0.57 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GO-06 19 50386087 50386087 C T TBC1D17 Missense_Mutation p.H289Y 0.43 tolerated(0.21) benign(0.003) TCGA-EE-A2GO-06 19 50463924 50463924 G A SIGLEC11 Silent p.S115S 0.14 TCGA-EE-A2GO-06 19 50482273 50482273 G A VRK3 Intron 0.45 TCGA-EE-A2GO-06 19 50491728 50491728 A T VRK3 Missense_Mutation p.L373H 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 50826956 50826956 G A KCNC3 Silent p.F418F 0.19 TCGA-EE-A2GO-06 19 50868798 50868798 G A NAPSA Silent p.I27I 0.51 TCGA-EE-A2GO-06 19 50905495 50905495 C T POLD1 Missense_Mutation p.P208L 0.30 tolerated(0.09) benign(0.013) TCGA-EE-A2GO-06 19 51021077 51021077 G A LRRC4B Silent p.S631S 0.37 TCGA-EE-A2GO-06 19 51323464 51323464 C T KLK1 Missense_Mutation p.E148K 0.38 tolerated(1) benign(0.002) TCGA-EE-A2GO-06 19 51329071 51329071 T C KLK15 Missense_Mutation p.E251G 0.31 tolerated(0.1) benign(0.285) TCGA-EE-A2GO-06 19 51330167 51330167 C T KLK15 Missense_Mutation p.E150K 0.33 tolerated(1) benign(0.003) TCGA-EE-A2GO-06 19 51452022 51452022 G A KLK5 Silent p.F200F 0.30 TCGA-EE-A2GO-06 19 51462453 51462453 C T KLK6 Silent p.T234T 0.53 TCGA-EE-A2GO-06 19 51559980 51559980 G A KLK13 Missense_Mutation p.S233F 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 51728840 51728840 C T CD33 Missense_Mutation p.S135F 0.71 tolerated(0.12) possibly_damaging(0.815) TCGA-EE-A2GO-06 19 51742945 51742945 G A CD33 3'UTR 0.27 TCGA-EE-A2GO-06 19 51768631 51768631 A G SIGLECL1 Missense_Mutation p.K11R 0.26 tolerated(1) unknown(0) TCGA-EE-A2GO-06 19 51768857 51768857 G A SIGLECL1 Silent p.G86G 0.65 TCGA-EE-A2GO-06 19 51890415 51890415 C T LIM2 Missense_Mutation p.G95R 0.39 tolerated_low_confidence(0.66) benign(0.295) TCGA-EE-A2GO-06 19 52034566 52034566 C T SIGLEC6 Missense_Mutation p.R92Q 0.55 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 19 52249678 52249678 C T FPR1 Silent p.R190R 0.22 TCGA-EE-A2GO-06 19 52619838 52619838 G A ZNF616 Silent p.A193A 0.43 TCGA-EE-A2GO-06 19 53138358 53138358 C T ZNF83 5'UTR 0.45 TCGA-EE-A2GO-06 19 53855283 53855283 C T ZNF845 Missense_Mutation p.S452L 0.22 deleterious(0) probably_damaging(0.945) TCGA-EE-A2GO-06 19 53994339 53994339 T A ZNF813 Missense_Mutation p.S285T 0.30 tolerated(0.13) benign(0.117) TCGA-EE-A2GO-06 19 54194202 54194202 G A MIR520A RNA 0.31 TCGA-EE-A2GO-06 19 54313058 54313058 C T NLRP12 Missense_Mutation p.E619K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 19 54744789 54744789 C T LILRA6 Silent p.G291G 0.18 TCGA-EE-A2GO-06 19 54745664 54745664 C T LILRA6 Missense_Mutation p.G149E 0.14 tolerated(0.05) possibly_damaging(0.494) TCGA-EE-A2GO-06 19 54849935 54849935 G A LILRA4 Silent p.P29P 0.30 TCGA-EE-A2GO-06 19 54872608 54872608 T C LAIR1 Silent p.E93E 0.30 TCGA-EE-A2GO-06 19 549812 549812 C T GZMM 3'UTR 0.31 TCGA-EE-A2GO-06 19 55086778 55086778 G A LILRA2 Silent p.G237G 0.20 TCGA-EE-A2GO-06 19 55385753 55385753 C T FCAR Missense_Mutation p.P3L 0.27 deleterious(0.04) probably_damaging(0.922) TCGA-EE-A2GO-06 19 55494742 55494742 G A NLRP2 Missense_Mutation p.G559D 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 55512131 55512131 G A NLRP2 Silent p.L1018L 0.23 TCGA-EE-A2GO-06 19 55526363 55526363 G A GP6 Missense_Mutation p.P317L 0.30 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A2GO-06 19 55543684 55543684 C T GP6 Missense_Mutation p.G50R 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2GO-06 19 55607508 55607508 G A PPP1R12C Missense_Mutation p.S355F 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GO-06 19 56369489 56369489 G A NLRP4 Missense_Mutation p.D244N 0.33 deleterious(0.01) benign(0.157) TCGA-EE-A2GO-06 19 56481919 56481919 C T NLRP8 Silent p.D797D 0.25 TCGA-EE-A2GO-06 19 5653265 5653265 C T SAFB Missense_Mutation p.S478F 0.49 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GO-06 19 56539477 56539477 C T NLRP5 Silent p.F626F 0.68 TCGA-EE-A2GO-06 19 56896041 56896041 G A ZNF582 Missense_Mutation p.H249Y 0.59 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GO-06 19 57175856 57175856 C T ZNF835 Silent p.L237L 0.41 TCGA-EE-A2GO-06 19 57327075 57327075 C T PEG3 Missense_Mutation p.G912E 0.43 tolerated(0.13) benign(0.216) TCGA-EE-A2GO-06 19 57327691 57327691 G A PEG3 Missense_Mutation p.H707Y 0.45 tolerated(0.3) possibly_damaging(0.863) TCGA-EE-A2GO-06 19 57327766 57327766 C T PEG3 Missense_Mutation p.E682K 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A2GO-06 19 57640948 57640948 C T USP29 Missense_Mutation p.S302L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 57642615 57642615 G A USP29 Missense_Mutation p.D858N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 19 57646552 57646552 G A ZIM3 Missense_Mutation p.H385Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 19 57716817 57716817 G A ZNF264 Silent p.E71E 0.24 TCGA-EE-A2GO-06 19 57838006 57838006 C T ZNF543 Missense_Mutation p.P51S 0.24 tolerated(0.08) benign(0.176) TCGA-EE-A2GO-06 19 58002917 58002917 C T ZNF419 Missense_Mutation p.L52F 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GO-06 19 58370674 58370674 T G ZNF587 Missense_Mutation p.C298W 0.68 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GO-06 19 58640350 58640350 G A ZNF329 Missense_Mutation p.S174L 0.32 tolerated(0.54) benign(0) TCGA-EE-A2GO-06 19 58899606 58899606 C T RPS5 Silent p.S34S 0.17 TCGA-EE-A2GO-06 19 5997151 5997151 A G RFX2 Missense_Mutation p.Y645H 0.15 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GO-06 19 6001899 6001899 G A RFX2 Silent p.L596L 0.30 TCGA-EE-A2GO-06 19 6016274 6016274 C T RFX2 Nonsense_Mutation p.W202* 0.43 TCGA-EE-A2GO-06 19 6187640 6187640 C T ACSBG2 Silent p.L571L 0.23 TCGA-EE-A2GO-06 19 6586121 6586121 C T CD70 Silent p.G164G 0.22 TCGA-EE-A2GO-06 19 6697542 6697542 G A C3 Missense_Mutation p.P870L 0.37 deleterious(0.01) possibly_damaging(0.58) TCGA-EE-A2GO-06 19 6712574 6712574 A T C3 Missense_Mutation p.I355N 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 19 7132257 7132257 C T INSR Silent p.P918P 0.44 TCGA-EE-A2GO-06 19 761645 761645 G A MISP Silent p.S644S 0.25 TCGA-EE-A2GO-06 19 7676684 7676684 G A CAMSAP3 Silent p.L462L 0.36 TCGA-EE-A2GO-06 19 7709610 7709610 C T STXBP2 Silent p.V406V 0.15 TCGA-EE-A2GO-06 19 7742584 7742584 G A C19orf59 Silent p.K52K 0.26 TCGA-EE-A2GO-06 19 8662007 8662007 C T ADAMTS10 Missense_Mutation p.E302K 0.26 tolerated(0.1) possibly_damaging(0.639) TCGA-EE-A2GO-06 19 8997424 8997424 G A MUC16 Silent p.V13666V 0.57 TCGA-EE-A2GO-06 19 9010671 9010671 G A MUC16 Missense_Mutation p.P12997L 0.45 possibly_damaging(0.646) TCGA-EE-A2GO-06 19 9020067 9020067 C A MUC16 Silent p.L12476L 0.45 TCGA-EE-A2GO-06 19 9047882 9047882 A G MUC16 Missense_Mutation p.V11250A 0.22 benign(0.007) TCGA-EE-A2GO-06 19 9059000 9059000 C T MUC16 Silent p.L9482L 0.15 TCGA-EE-A2GO-06 19 9066420 9066420 G A MUC16 Missense_Mutation p.S7009F 0.19 unknown(0) TCGA-EE-A2GO-06 19 9077424 9077424 C T MUC16 Missense_Mutation p.G3341E 0.40 unknown(0) TCGA-EE-A2GO-06 19 9077700 9077700 G A MUC16 Missense_Mutation p.S3249F 0.38 unknown(0) TCGA-EE-A2GO-06 19 9082792 9082792 G A MUC16 Missense_Mutation p.S3008F 0.23 unknown(0) TCGA-EE-A2GO-06 19 9091402 9091402 C T MUC16 Missense_Mutation p.G138E 0.27 unknown(0) TCGA-EE-A2GO-06 19 9225670 9225670 C T OR7G1 Missense_Mutation p.G257E 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 19 9236857 9236857 C T OR7G3 Missense_Mutation p.G257E 0.24 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2GO-06 19 9237093 9237093 G A OR7G3 Silent p.F178F 0.48 TCGA-EE-A2GO-06 19 9362536 9362536 G A OR7E24 Missense_Mutation p.G273R 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2GO-06 19 9801498 9801498 C T ZNF812 Silent p.G227G 0.76 TCGA-EE-A2GO-06 19 9801789 9801789 G A ZNF812 Silent p.A130A 0.14 TCGA-EE-A2GO-06 1 103352591 103352591 G A COL11A1 Nonsense_Mutation p.Q1544* 0.56 TCGA-EE-A2GO-06 1 103354172 103354172 C T COL11A1 Silent p.Q1523Q 0.25 TCGA-EE-A2GO-06 1 103380351 103380351 C T COL11A1 Missense_Mutation p.R1278K 0.40 unknown(0) TCGA-EE-A2GO-06 1 110086695 110086695 G A GPR61 Missense_Mutation p.E351K 0.86 deleterious(0) possibly_damaging(0.54) TCGA-EE-A2GO-06 1 110587465 110587465 G T STRIP1 Missense_Mutation p.E430D 0.52 tolerated(0.08) possibly_damaging(0.815) TCGA-EE-A2GO-06 1 111216661 111216661 C G KCNA3 Silent p.P257P 0.30 TCGA-EE-A2GO-06 1 111862988 111862988 G A CHIA Missense_Mutation p.R444K 0.40 tolerated(1) benign(0.009) TCGA-EE-A2GO-06 1 114184909 114184909 C T MAGI3 Silent p.I579I 0.89 TCGA-EE-A2GO-06 1 11579800 11579800 C T PTCHD2 Missense_Mutation p.S688F 0.38 deleterious(0) possibly_damaging(0.73) TCGA-EE-A2GO-06 1 117297532 117297532 G A CD2 Missense_Mutation p.G114E 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 1260006 1260006 C T CPSF3L 5'Flank 0.35 TCGA-EE-A2GO-06 1 12785502 12785502 C T AADACL3 Nonsense_Mutation p.Q198* 0.90 TCGA-EE-A2GO-06 1 142713747 142713747 C T RP11-417J8.6 RNA 0.47 TCGA-EE-A2GO-06 1 144857711 144857711 G A PDE4DIP Missense_Mutation p.P2115S 0.38 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 1 144994676 144994676 T C PDE4DIP Missense_Mutation p.N19S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 1 145414752 145414752 C T HFE2 5'UTR 0.56 TCGA-EE-A2GO-06 1 146658773 146658773 C T FMO5 Missense_Mutation p.M436I 0.29 tolerated(0.06) benign(0.345) TCGA-EE-A2GO-06 1 146728204 146728204 C T CHD1L Missense_Mutation p.S161L 0.22 tolerated(0.26) benign(0.012) TCGA-EE-A2GO-06 1 147381176 147381176 C T GJA8 Missense_Mutation p.A365V 0.43 tolerated(0.18) benign(0.002) TCGA-EE-A2GO-06 1 150239809 150239809 C A APH1A Missense_Mutation p.G143V 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 150255570 150255570 T C C1orf51 5'UTR 0.53 TCGA-EE-A2GO-06 1 150258849 150258849 C T C1orf51 Missense_Mutation p.P214L 0.11 tolerated(0.16) benign(0.021) TCGA-EE-A2GO-06 1 150444238 150444238 C T RPRD2 Silent p.F938F 0.44 TCGA-EE-A2GO-06 1 150528642 150528642 C T ADAMTSL4 Missense_Mutation p.P459L 0.48 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 1 150528643 150528643 C T ADAMTSL4 Silent p.P459P 0.49 TCGA-EE-A2GO-06 1 151147352 151147352 G A TMOD4 5'UTR 0.39 TCGA-EE-A2GO-06 1 151276087 151276087 G A PI4KB Nonsense_Mutation p.Q496* 0.21 TCGA-EE-A2GO-06 1 151495951 151495951 G A CGN Silent p.R394R 0.17 TCGA-EE-A2GO-06 1 151748637 151748637 C T TDRKH Silent p.L384L 0.33 TCGA-EE-A2GO-06 1 151798450 151798450 C T RORC Intron 0.43 TCGA-EE-A2GO-06 1 152276532 152276532 C T FLG Silent p.Q3610Q 0.18 TCGA-EE-A2GO-06 1 152280644 152280644 C T FLG Missense_Mutation p.G2240R 0.23 probably_damaging(0.988) TCGA-EE-A2GO-06 1 152283592 152283592 G A FLG Missense_Mutation p.S1257L 0.48 possibly_damaging(0.637) TCGA-EE-A2GO-06 1 152286884 152286884 C T FLG Missense_Mutation p.E160K 0.22 benign(0.083) TCGA-EE-A2GO-06 1 152326001 152326001 C A FLG2 Nonsense_Mutation p.G1421* 0.38 TCGA-EE-A2GO-06 1 152326002 152326002 C T FLG2 Silent p.R1420R 0.38 TCGA-EE-A2GO-06 1 152573553 152573553 G A LCE3C 3'UTR 0.69 TCGA-EE-A2GO-06 1 153065920 153065920 G A SPRR2E 3'UTR 0.28 TCGA-EE-A2GO-06 1 153066138 153066138 C T SPRR2E Silent p.P30P 0.40 TCGA-EE-A2GO-06 1 153309716 153309716 G A PGLYRP4 Missense_Mutation p.S295F 0.45 deleterious(0.04) benign(0.055) TCGA-EE-A2GO-06 1 153661494 153661494 A C NPR1 Missense_Mutation p.E828A 0.23 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2GO-06 1 153924881 153924885 AGGGA - CRTC2 Frame_Shift_Del p.V247Gfs*3 0.33 TCGA-EE-A2GO-06 1 154002460 154002460 C T NUP210L Missense_Mutation p.S1256N 0.42 tolerated(0.06) benign(0.011) TCGA-EE-A2GO-06 1 154541935 154541935 C T CHRNB2 Intron 0.45 TCGA-EE-A2GO-06 1 154569431 154569431 G A ADAR Missense_Mutation p.S707F 0.40 deleterious(0.04) possibly_damaging(0.781) TCGA-EE-A2GO-06 1 155292345 155292345 A G RUSC1 Missense_Mutation p.N261D 0.46 tolerated_low_confidence(0.08) benign(0.002) TCGA-EE-A2GO-06 1 155385688 155385688 G A ASH1L Missense_Mutation p.P1952L 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.74) TCGA-EE-A2GO-06 1 155448032 155448032 G A ASH1L Silent p.L1543L 0.23 TCGA-EE-A2GO-06 1 155988123 155988123 G A SSR2 Silent p.F64F 0.24 TCGA-EE-A2GO-06 1 156351898 156351898 G A RHBG Missense_Mutation p.G340R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 156377662 156377662 C T C1orf61 Missense_Mutation p.D93N 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.483) TCGA-EE-A2GO-06 1 156761537 156761537 C T PRCC Missense_Mutation p.P378S 0.50 tolerated(0.15) benign(0.02) TCGA-EE-A2GO-06 1 156810769 156810769 C T INSRR Missense_Mutation p.E1264K 0.29 deleterious(0.02) benign(0.016) TCGA-EE-A2GO-06 1 156810770 156810770 C T INSRR Silent p.P1263P 0.35 TCGA-EE-A2GO-06 1 158390349 158390349 G A OR10K2 Missense_Mutation p.S103F 0.27 tolerated(1) benign(0.003) TCGA-EE-A2GO-06 1 158390504 158390504 C T OR10K2 Silent p.L51L 0.54 TCGA-EE-A2GO-06 1 158585143 158585143 C T SPTA1 Silent p.V2217V 0.41 TCGA-EE-A2GO-06 1 158609735 158609735 C T SPTA1 Silent p.G1600G 0.68 TCGA-EE-A2GO-06 1 158631199 158631199 C T SPTA1 Missense_Mutation p.G822E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 158632681 158632681 G A SPTA1 Missense_Mutation p.P759S 0.37 tolerated(0.65) probably_damaging(1) TCGA-EE-A2GO-06 1 158687360 158687360 G A OR6K3 Silent p.V182V 0.43 TCGA-EE-A2GO-06 1 158746892 158746892 G A OR6N2 Silent p.F178F 0.37 TCGA-EE-A2GO-06 1 159163703 159163703 C T CADM3 Silent p.F222F 0.14 TCGA-EE-A2GO-06 1 159409868 159409868 G A OR10J1 Missense_Mutation p.G107E 0.24 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A2GO-06 1 159409869 159409869 G A OR10J1 Silent p.G107G 0.28 TCGA-EE-A2GO-06 1 159922086 159922086 A G SLAMF9 Silent p.S210S 0.49 TCGA-EE-A2GO-06 1 160109768 160109768 C T ATP1A2 Missense_Mutation p.P1010S 0.23 deleterious(0.01) benign(0.225) TCGA-EE-A2GO-06 1 160313076 160313076 G A NCSTN 5'UTR 0.59 TCGA-EE-A2GO-06 1 160326129 160326129 C T NCSTN Missense_Mutation p.S544F 0.39 deleterious(0.03) benign(0.149) TCGA-EE-A2GO-06 1 160535278 160535278 C T CD84 Missense_Mutation p.E102K 0.46 tolerated(0.06) possibly_damaging(0.511) TCGA-EE-A2GO-06 1 16091721 16091721 C T FBLIM1 Silent p.F81F 0.50 TCGA-EE-A2GO-06 1 161145651 161145651 C T B4GALT3 Missense_Mutation p.G67D 0.17 tolerated(0.66) benign(0.001) TCGA-EE-A2GO-06 1 161722885 161722885 C T DUSP12 Missense_Mutation p.S232F 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 1 161967678 161967678 C T OLFML2B Missense_Mutation p.G471R 0.22 tolerated(0.54) benign(0.002) TCGA-EE-A2GO-06 1 162743360 162743360 C A DDR2 Silent p.L610L 0.35 TCGA-EE-A2GO-06 1 163317623 163317623 C T NUF2 Missense_Mutation p.S340L 0.22 deleterious(0.01) possibly_damaging(0.656) TCGA-EE-A2GO-06 1 164781388 164781388 T C PBX1 Splice_Site p.X333_splice 0.48 TCGA-EE-A2GO-06 1 165370416 165370416 G A RXRG 3'UTR 0.40 TCGA-EE-A2GO-06 1 166926021 166926021 G A ILDR2 Missense_Mutation p.P150S 0.36 tolerated(0.37) possibly_damaging(0.493) TCGA-EE-A2GO-06 1 167798538 167798538 C T ADCY10 Missense_Mutation p.M1239I 0.46 tolerated(0.34) benign(0.001) TCGA-EE-A2GO-06 1 167825450 167825450 C T ADCY10 Silent p.K708K 0.50 TCGA-EE-A2GO-06 1 168014418 168014418 C T DCAF6 Silent p.D737D 0.29 TCGA-EE-A2GO-06 1 16918448 16918448 T A NBPF1 Missense_Mutation p.K23N 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-EE-A2GO-06 1 169391224 169391224 C T CCDC181 Missense_Mutation p.E149K 0.28 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 1 169701978 169701978 G A SELE Missense_Mutation p.P67S 0.49 tolerated(0.09) benign(0.044) TCGA-EE-A2GO-06 1 169762312 169762312 G A METTL18 Silent p.L175L 0.49 TCGA-EE-A2GO-06 1 17085051 17085051 C T MST1L RNA 0.13 TCGA-EE-A2GO-06 1 171174595 171174595 T C FMO2 Silent p.F335F 0.62 TCGA-EE-A2GO-06 1 171293343 171293343 G A FMO4 Missense_Mutation p.E130K 0.47 deleterious(0.03) probably_damaging(0.917) TCGA-EE-A2GO-06 1 171673630 171673630 G A VAMP4 3'UTR 0.32 TCGA-EE-A2GO-06 1 172501852 172501852 G A SUCO 5'Flank 0.16 TCGA-EE-A2GO-06 1 17331246 17331246 C T ATP13A2 Missense_Mutation p.G140S 0.34 tolerated(0.7) benign(0.009) TCGA-EE-A2GO-06 1 173526645 173526645 A G SLC9C2 Missense_Mutation p.L350S 0.20 deleterious(0) probably_damaging(0.91) TCGA-EE-A2GO-06 1 173886454 173886454 C T SERPINC1 5'UTR 0.28 TCGA-EE-A2GO-06 1 17566187 17566187 C T PADI1 Intron 0.47 TCGA-EE-A2GO-06 1 17664611 17664611 G T PADI4 Missense_Mutation p.A163S 0.50 tolerated(0.71) benign(0.018) TCGA-EE-A2GO-06 1 176993856 176993856 C T ASTN1 Missense_Mutation p.R378Q 0.27 tolerated(0.08) probably_damaging(0.994) TCGA-EE-A2GO-06 1 177030324 177030324 G A ASTN1 Missense_Mutation p.H121Y 0.21 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-EE-A2GO-06 1 177133586 177133586 C T ASTN1 Missense_Mutation p.G76E 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GO-06 1 17714972 17714972 T C PADI6 RNA 0.69 TCGA-EE-A2GO-06 1 179820027 179820027 G A TOR1AIP2 Missense_Mutation p.A169V 0.49 tolerated(0.16) benign(0.037) TCGA-EE-A2GO-06 1 180056805 180056805 C T CEP350 Silent p.S2126S 0.62 TCGA-EE-A2GO-06 1 181765975 181765975 C T CACNA1E Missense_Mutation p.S2127L 0.42 deleterious(0.03) possibly_damaging(0.693) TCGA-EE-A2GO-06 1 182369657 182369657 A G TEDDM1 5'UTR 0.33 TCGA-EE-A2GO-06 1 182823237 182823237 C T DHX9 Missense_Mutation p.R184C 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GO-06 1 182872188 182872188 C T SHCBP1L Missense_Mutation p.G566R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 183209264 183209264 G A LAMC2 Missense_Mutation p.M1053I 0.39 tolerated(0.17) benign(0.001) TCGA-EE-A2GO-06 1 183212336 183212336 C T LAMC2 Missense_Mutation p.S1128F 0.39 tolerated(0.16) benign(0.002) TCGA-EE-A2GO-06 1 184681685 184681685 A G EDEM3 Missense_Mutation p.L473S 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 1 184764549 184764549 C T FAM129A Silent p.E783E 0.44 TCGA-EE-A2GO-06 1 185988821 185988821 C G HMCN1 Missense_Mutation p.N1873K 0.71 possibly_damaging(0.633) TCGA-EE-A2GO-06 1 186276150 186276150 G A PRG4 Silent p.K433K 0.26 TCGA-EE-A2GO-06 1 186276151 186276151 G A PRG4 Missense_Mutation p.E434K 0.25 unknown(0) TCGA-EE-A2GO-06 1 186277471 186277471 G A PRG4 Missense_Mutation p.D874N 0.24 unknown(0) TCGA-EE-A2GO-06 1 190234038 190234038 A G BRINP3 Missense_Mutation p.L192P 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 19439233 19439233 C T UBR4 Silent p.L3862L 0.44 TCGA-EE-A2GO-06 1 1961505 1961505 C T GABRD Silent p.R381R 0.90 TCGA-EE-A2GO-06 1 196205198 196205198 C T KCNT2 Missense_Mutation p.E1072K 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GO-06 1 196757382 196757382 G A CFHR3 Missense_Mutation p.G156E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 1 196920005 196920005 G A CFHR2 Missense_Mutation p.E93K 0.21 tolerated(0.07) benign(0.068) TCGA-EE-A2GO-06 1 197008460 197008460 G A F13B 3'UTR 0.73 TCGA-EE-A2GO-06 1 197390900 197390900 A G CRB1 Missense_Mutation p.I648V 0.42 tolerated(0.76) benign(0.219) TCGA-EE-A2GO-06 1 200017310 200017310 C T NR5A2 Silent p.A158A 0.09 TCGA-EE-A2GO-06 1 200090049 200090049 C T NR5A2 Silent p.F448F 0.21 TCGA-EE-A2GO-06 1 200143284 200143284 G A NR5A2 Silent p.G524G 0.18 TCGA-EE-A2GO-06 1 200818809 200818809 C T CAMSAP2 Missense_Mutation p.S971F 0.40 deleterious(0.04) possibly_damaging(0.622) TCGA-EE-A2GO-06 1 200943301 200943301 C T KIF21B Nonsense_Mutation p.W1612* 0.20 TCGA-EE-A2GO-06 1 200943302 200943302 C T KIF21B Nonsense_Mutation p.W1612* 0.20 TCGA-EE-A2GO-06 1 200956007 200956007 C T KIF21B Silent p.T1218T 0.51 TCGA-EE-A2GO-06 1 201777278 201777278 G A NAV1 Splice_Site p.X1282_splice 0.23 TCGA-EE-A2GO-06 1 203098205 203098205 C T ADORA1 Missense_Mutation p.T79I 0.20 deleterious(0.01) possibly_damaging(0.597) TCGA-EE-A2GO-06 1 203807111 203807111 C T ZC3H11A Missense_Mutation p.P298S 0.37 tolerated(0.1) benign(0.401) TCGA-EE-A2GO-06 1 204085649 204085649 C T SOX13 Silent p.L145L 0.27 TCGA-EE-A2GO-06 1 204586942 204586942 C T LRRN2 3'UTR 0.53 TCGA-EE-A2GO-06 1 204587153 204587153 C T LRRN2 Silent p.R656R 0.49 TCGA-EE-A2GO-06 1 204588392 204588392 G A LRRN2 Silent p.S243S 0.52 TCGA-EE-A2GO-06 1 204971868 204971868 C T NFASC Missense_Mutation p.T1094I 0.36 deleterious(0.02) unknown(0) TCGA-EE-A2GO-06 1 205744129 205744129 G A RAB7L1 5'UTR 0.48 TCGA-EE-A2GO-06 1 205884355 205884355 G A SLC26A9 Intron 0.28 TCGA-EE-A2GO-06 1 205884356 205884356 G A SLC26A9 Intron 0.28 TCGA-EE-A2GO-06 1 206240150 206240150 G A C1orf186 Missense_Mutation p.S101L 0.42 tolerated(0.19) benign(0.028) TCGA-EE-A2GO-06 1 207103600 207103600 C T PIGR 3'UTR 0.23 TCGA-EE-A2GO-06 1 207700143 207700143 G A CR1 Missense_Mutation p.R311K 0.22 tolerated(0.97) benign(0.091) TCGA-EE-A2GO-06 1 207700172 207700172 G A CR1 Missense_Mutation p.E321K 0.21 tolerated(0.57) possibly_damaging(0.68) TCGA-EE-A2GO-06 1 208390360 208390360 G A PLXNA2 Missense_Mutation p.A303V 0.13 tolerated(0.19) benign(0.049) TCGA-EE-A2GO-06 1 210014265 210014265 T C DIEXF Silent p.A450A 0.41 TCGA-EE-A2GO-06 1 210014267 210014267 C A DIEXF Missense_Mutation p.S451Y 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 211093146 211093146 T A KCNH1 Missense_Mutation p.N433I 0.27 deleterious(0.03) benign(0.413) TCGA-EE-A2GO-06 1 21183960 21183960 T C EIF4G3 Missense_Mutation p.N1042S 0.40 deleterious(0.03) benign(0.145) TCGA-EE-A2GO-06 1 212530019 212530019 G A PPP2R5A Splice_Site p.X326_splice 0.25 TCGA-EE-A2GO-06 1 213134549 213134549 G A VASH2 Silent p.T106T 0.23 TCGA-EE-A2GO-06 1 214557025 214557025 G A PTPN14 Missense_Mutation p.P725S 0.24 tolerated(0.07) benign(0.021) TCGA-EE-A2GO-06 1 215848525 215848525 C T USH2A Nonsense_Mutation p.W4243* 0.24 TCGA-EE-A2GO-06 1 215916616 215916616 T A USH2A Silent p.T3817T 0.42 TCGA-EE-A2GO-06 1 216062114 216062114 C T USH2A Missense_Mutation p.G2626E 0.56 possibly_damaging(0.721) TCGA-EE-A2GO-06 1 21903933 21903933 G A ALPL Missense_Mutation p.G456E 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 1 22165414 22165414 A C HSPG2 Missense_Mutation p.F3352V 0.92 benign(0.024) TCGA-EE-A2GO-06 1 22175269 22175269 G A HSPG2 Missense_Mutation p.P2535L 0.36 probably_damaging(1) TCGA-EE-A2GO-06 1 223285357 223285357 T C TLR5 Silent p.Q339Q 0.47 TCGA-EE-A2GO-06 1 225140421 225140421 C T DNAH14 Missense_Mutation p.P6L 0.29 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-EE-A2GO-06 1 226788371 226788371 C T C1orf95 Silent p.S129S 0.42 TCGA-EE-A2GO-06 1 226788372 226788372 C T C1orf95 Nonsense_Mutation p.Q130* 0.41 TCGA-EE-A2GO-06 1 228437925 228437925 C T OBSCN Silent p.F1523F 0.26 TCGA-EE-A2GO-06 1 228451839 228451839 G A OBSCN Silent p.K1720K 0.32 TCGA-EE-A2GO-06 1 228466522 228466522 C T OBSCN Missense_Mutation p.P2760L 0.24 possibly_damaging(0.763) TCGA-EE-A2GO-06 1 229683350 229683350 T A ABCB10 Missense_Mutation p.N273Y 0.51 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 1 229729998 229729998 G A TAF5L 3'UTR 0.50 TCGA-EE-A2GO-06 1 229730170 229730170 G A TAF5L Silent p.A548A 0.24 TCGA-EE-A2GO-06 1 229730171 229730171 G A TAF5L Missense_Mutation p.A548V 0.24 tolerated(0.27) benign(0.017) TCGA-EE-A2GO-06 1 22974025 22974025 C T C1QC Missense_Mutation p.P163S 0.97 deleterious(0.05) probably_damaging(0.957) TCGA-EE-A2GO-06 1 230415147 230415147 G A GALNT2 Silent p.E553E 0.45 TCGA-EE-A2GO-06 1 230492894 230492894 C T PGBD5 Missense_Mutation p.A100T 0.18 tolerated(0.07) benign(0.202) TCGA-EE-A2GO-06 1 231044745 231044745 G A TTC13 Silent p.I777I 0.28 TCGA-EE-A2GO-06 1 231342409 231342409 C T TRIM67 Silent p.V564V 0.28 TCGA-EE-A2GO-06 1 23240142 23240142 C T EPHB2 3'UTR 0.50 TCGA-EE-A2GO-06 1 232650836 232650836 G T SIPA1L2 Missense_Mutation p.P84T 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 1 233394754 233394754 G A PCNXL2 Missense_Mutation p.P285L 0.60 tolerated_low_confidence(0.06) benign(0.004) TCGA-EE-A2GO-06 1 235599097 235599097 C T TBCE Missense_Mutation p.L259F 0.19 deleterious(0.04) possibly_damaging(0.637) TCGA-EE-A2GO-06 1 235887328 235887328 C T LYST Silent p.K3105K 0.50 TCGA-EE-A2GO-06 1 236189399 236189399 G A NID1 Missense_Mutation p.P594L 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 1 236384163 236384163 C T ERO1LB Missense_Mutation p.E438K 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 237755154 237755154 G A RYR2 Splice_Site p.X1425_splice 0.32 TCGA-EE-A2GO-06 1 237880620 237880620 C T RYR2 Silent p.A3482A 0.20 TCGA-EE-A2GO-06 1 238053477 238053477 C T ZP4 Splice_Site p.X59_splice 0.42 TCGA-EE-A2GO-06 1 240072581 240072581 G A CHRM3 3'UTR 0.61 TCGA-EE-A2GO-06 1 240497457 240497457 C T FMN2 Missense_Mutation p.L1565F 0.21 possibly_damaging(0.803) TCGA-EE-A2GO-06 1 241725464 241725464 C T KMO Intron 0.32 TCGA-EE-A2GO-06 1 241725503 241725503 C T KMO Silent p.L162L 0.19 TCGA-EE-A2GO-06 1 241901671 241901671 C T WDR64 Missense_Mutation p.R391W 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 1 247588515 247588515 C T NLRP3 Silent p.S590S 0.47 TCGA-EE-A2GO-06 1 247588813 247588813 G A NLRP3 Missense_Mutation p.E690K 0.17 deleterious(0.04) benign(0.211) TCGA-EE-A2GO-06 1 247615197 247615197 G A OR2B11 Missense_Mutation p.P30S 0.19 tolerated(0.26) benign(0.007) TCGA-EE-A2GO-06 1 247769009 247769009 G A OR2G3 Missense_Mutation p.G41E 0.56 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 1 248039313 248039313 G A TRIM58 Missense_Mutation p.R328Q 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 248085243 248085243 C T OR2T8 Silent p.A308A 0.18 TCGA-EE-A2GO-06 1 248129042 248129042 C T OR2AK2 Missense_Mutation p.R137C 0.45 deleterious(0.03) benign(0.117) TCGA-EE-A2GO-06 1 248201878 248201878 C T OR2L2 Silent p.F103F 0.69 TCGA-EE-A2GO-06 1 248309381 248309381 G A OR2M5 Missense_Mutation p.G311E 0.46 deleterious(0.03) benign(0.027) TCGA-EE-A2GO-06 1 248436624 248436624 G A OR2T33 Missense_Mutation p.P165S 0.16 tolerated(0.24) benign(0.158) TCGA-EE-A2GO-06 1 248487802 248487802 G A OR2M7 Silent p.T23T 0.22 TCGA-EE-A2GO-06 1 248512185 248512185 C T OR14C36 Silent p.L37L 0.44 TCGA-EE-A2GO-06 1 248757031 248757031 G A OR2T10 Silent p.F13F 0.36 TCGA-EE-A2GO-06 1 26899811 26899811 C T RPS6KA1 Missense_Mutation p.P691S 0.89 tolerated(0.58) benign(0.078) TCGA-EE-A2GO-06 1 27239939 27239939 C T NR0B2 Missense_Mutation p.E165K 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 32089168 32089168 C T HCRTR1 Silent p.P261P 0.86 TCGA-EE-A2GO-06 1 32193866 32193866 G A BAI2 Missense_Mutation p.R1478W 0.51 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 1 32193867 32193867 G A BAI2 Silent p.T1477T 0.52 TCGA-EE-A2GO-06 1 32280058 32280058 C T SPOCD1 Missense_Mutation p.D293N 0.43 tolerated(0.73) benign(0.001) TCGA-EE-A2GO-06 1 32280060 32280060 C T SPOCD1 Missense_Mutation p.G292E 0.40 tolerated(0.29) benign(0.042) TCGA-EE-A2GO-06 1 32742380 32742380 G A LCK Missense_Mutation p.M319I 1.00 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GO-06 1 3319466 3319466 G A PRDM16 Missense_Mutation p.G263D 0.90 tolerated(0.75) benign(0.003) TCGA-EE-A2GO-06 1 33333902 33333902 C T FNDC5 Missense_Mutation p.E25K 0.94 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2GO-06 1 33954734 33954734 C T ZSCAN20 Silent p.V208V 1.00 TCGA-EE-A2GO-06 1 35260147 35260147 G A GJA4 Silent p.G111G 0.45 TCGA-EE-A2GO-06 1 35579239 35579239 G A ZMYM1 Missense_Mutation p.R603Q 0.51 tolerated(0.45) benign(0.042) TCGA-EE-A2GO-06 1 36888417 36888417 C T OSCP1 Missense_Mutation p.G234D 0.96 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GO-06 1 38078566 38078566 C T RSPO1 Missense_Mutation p.G218D 0.54 tolerated(0.1) benign(0.009) TCGA-EE-A2GO-06 1 38181575 38181575 G A EPHA10 3'Flank 0.91 TCGA-EE-A2GO-06 1 38227386 38227386 C T EPHA10 Missense_Mutation p.G181R 0.45 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 1 38328076 38328076 G A INPP5B Nonsense_Mutation p.R885* 0.40 TCGA-EE-A2GO-06 1 39815239 39815239 C T MACF1 Silent p.H1573H 0.29 TCGA-EE-A2GO-06 1 40767049 40767049 G T COL9A2 Silent p.L625L 0.39 TCGA-EE-A2GO-06 1 42049332 42049332 C T HIVEP3 Silent p.A379A 0.56 TCGA-EE-A2GO-06 1 42049993 42049993 C T HIVEP3 Missense_Mutation p.G159E 0.53 possibly_damaging(0.632) TCGA-EE-A2GO-06 1 43652459 43652459 G A WDR65 Missense_Mutation p.E351K 0.35 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2GO-06 1 44433043 44433043 C T IPO13 Silent p.F890F 0.49 TCGA-EE-A2GO-06 1 44474151 44474151 T C SLC6A9 Missense_Mutation p.D228G 0.38 tolerated(0.1) possibly_damaging(0.832) TCGA-EE-A2GO-06 1 46810632 46810632 C T NSUN4 Missense_Mutation p.H85Y 0.91 tolerated(0.05) benign(0.002) TCGA-EE-A2GO-06 1 46978205 46978205 C T DMBX1 3'UTR 0.94 TCGA-EE-A2GO-06 1 47040528 47040528 G T MKNK1 Intron 0.92 TCGA-EE-A2GO-06 1 47325416 47325416 C T CYP4Z2P RNA 0.30 TCGA-EE-A2GO-06 1 49128893 49128893 C T AGBL4 Missense_Mutation p.E219K 0.40 tolerated(0.77) benign(0.016) TCGA-EE-A2GO-06 1 51754558 51754558 C T TTC39A Missense_Mutation p.M525I 0.61 tolerated(0.49) benign(0.006) TCGA-EE-A2GO-06 1 52947567 52947567 C T ZCCHC11 Missense_Mutation p.G515D 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 52947568 52947568 C T ZCCHC11 Missense_Mutation p.G515S 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 1 54606824 54606825 - G CDCP2 Frame_Shift_Ins p.F237Sfs*79 0.35 TCGA-EE-A2GO-06 1 55224058 55224058 G A PARS2 Silent p.F259F 0.52 TCGA-EE-A2GO-06 1 55266487 55266487 T A TTC22 Missense_Mutation p.E117V 0.67 tolerated(0.26) benign(0.118) TCGA-EE-A2GO-06 1 55266488 55266488 C T TTC22 Missense_Mutation p.E117K 0.67 tolerated(0.73) benign(0.049) TCGA-EE-A2GO-06 1 57221595 57221595 C T C1orf168 Silent p.G368G 0.31 TCGA-EE-A2GO-06 1 57233561 57233561 G A C1orf168 Missense_Mutation p.S335L 0.44 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GO-06 1 66067284 66067284 C T LEPR Nonsense_Mutation p.R402* 0.97 TCGA-EE-A2GO-06 1 70478725 70478725 G A LRRC7 Silent p.E363E 0.43 TCGA-EE-A2GO-06 1 78324727 78324727 C T FAM73A Silent p.Y367Y 0.33 TCGA-EE-A2GO-06 1 87025893 87025893 G A CLCA4 Splice_Site p.X101_splice 0.86 TCGA-EE-A2GO-06 1 89889893 89889893 G A GBP1P1 RNA 0.38 TCGA-EE-A2GO-06 1 90399102 90399102 C T LRRC8D Missense_Mutation p.P159S 0.27 tolerated(0.06) probably_damaging(0.987) TCGA-EE-A2GO-06 1 94481381 94481381 C T ABCA4 Silent p.V1742V 0.29 TCGA-EE-A2GO-06 1 95293164 95293164 C T SLC44A3 Missense_Mutation p.S127F 0.42 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2GO-06 1 98164965 98164965 G A DPYD Nonsense_Mutation p.R208* 0.48 TCGA-EE-A2GO-06 20 1456749 1456749 G A SIRPB2 3'UTR 0.75 TCGA-EE-A2GO-06 20 1457961 1457961 C T SIRPB2 Intron 0.18 TCGA-EE-A2GO-06 20 24524187 24524187 G A SYNDIG1 Missense_Mutation p.E152K 0.20 deleterious(0.01) benign(0.421) TCGA-EE-A2GO-06 20 24646266 24646266 C T SYNDIG1 3'UTR 0.25 TCGA-EE-A2GO-06 20 25300863 25300863 G A ABHD12 Silent p.L172L 0.15 TCGA-EE-A2GO-06 20 30142633 30142633 G A HM13 Splice_Site p.X270_splice 0.19 TCGA-EE-A2GO-06 20 30475021 30475021 G A TTLL9 Missense_Mutation p.G31E 0.32 tolerated(0.16) benign(0.215) TCGA-EE-A2GO-06 20 3145196 3145196 G A LZTS3 Silent p.A642A 0.39 TCGA-EE-A2GO-06 20 31622590 31622590 G A BPIFB6 Silent p.E108E 0.19 TCGA-EE-A2GO-06 20 33331095 33331095 G A NCOA6 Nonsense_Mutation p.Q989* 0.39 TCGA-EE-A2GO-06 20 33568876 33568876 C T MYH7B Intron 0.17 TCGA-EE-A2GO-06 20 33586701 33586701 G A MYH7B Silent p.E1433E 0.38 TCGA-EE-A2GO-06 20 34022226 34022226 G A GDF5 Silent p.F329F 0.26 TCGA-EE-A2GO-06 20 34208851 34208851 G A SPAG4 Nonsense_Mutation p.W407* 0.19 TCGA-EE-A2GO-06 20 34213990 34213990 A C CPNE1 3'UTR 0.53 TCGA-EE-A2GO-06 20 34501993 34501993 G A PHF20 Missense_Mutation p.E567K 0.24 tolerated(0.29) benign(0.119) TCGA-EE-A2GO-06 20 34843623 34843623 G T AAR2 Missense_Mutation p.A371S 0.40 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A2GO-06 20 35444583 35444583 G A SOGA1 Missense_Mutation p.S421L 0.23 deleterious(0.01) possibly_damaging(0.867) TCGA-EE-A2GO-06 20 3684064 3684064 G A SIGLEC1 Silent p.I336I 0.20 TCGA-EE-A2GO-06 20 36962855 36962855 G A BPI Missense_Mutation p.M436I 0.28 tolerated(0.21) benign(0.158) TCGA-EE-A2GO-06 20 36993293 36993293 C T LBP Missense_Mutation p.P270S 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 20 37154672 37154672 C T RALGAPB Silent p.T679T 0.34 TCGA-EE-A2GO-06 20 37570694 37570694 C T FAM83D Silent p.I222I 0.42 TCGA-EE-A2GO-06 20 3785567 3785567 C T CDC25B Missense_Mutation p.R568W 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 20 40757460 40757460 G A PTPRT Silent p.S927S 0.50 TCGA-EE-A2GO-06 20 4202271 4202271 C G ADRA1D Missense_Mutation p.E540Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-EE-A2GO-06 20 43379008 43379008 G A KCNK15 Silent p.G174G 0.39 TCGA-EE-A2GO-06 20 43836048 43836048 C T SEMG1 Missense_Mutation p.S37F 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GO-06 20 43881042 43881042 C T SLPI 3'UTR 0.14 TCGA-EE-A2GO-06 20 44174346 44174346 C T EPPIN-WFDC6 Missense_Mutation p.R52K 0.49 tolerated(0.3) benign(0.163) TCGA-EE-A2GO-06 20 44174393 44174393 G A EPPIN-WFDC6 Silent p.I36I 0.38 TCGA-EE-A2GO-06 20 44869684 44869684 G A CDH22 Silent p.I156I 0.18 TCGA-EE-A2GO-06 20 45353840 45353840 C T SLC2A10 Silent p.L55L 0.16 TCGA-EE-A2GO-06 20 45875040 45875040 C T ZMYND8 Missense_Mutation p.E666K 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.557) TCGA-EE-A2GO-06 20 47990833 47990833 C T KCNB1 Missense_Mutation p.E422K 0.51 tolerated(0.11) probably_damaging(0.997) TCGA-EE-A2GO-06 20 48098870 48098870 C T KCNB1 Missense_Mutation p.D50N 0.23 tolerated(0.11) benign(0.2) TCGA-EE-A2GO-06 20 49218919 49218919 G A FAM65C Missense_Mutation p.P446L 0.23 deleterious(0.03) benign(0.044) TCGA-EE-A2GO-06 20 50286610 50286610 G A ATP9A Missense_Mutation p.H407Y 0.29 deleterious(0) possibly_damaging(0.649) TCGA-EE-A2GO-06 20 50769128 50769128 G A ZFP64 Missense_Mutation p.P535S 0.12 tolerated(0.25) benign(0.004) TCGA-EE-A2GO-06 20 5157321 5157321 C T CDS2 Missense_Mutation p.H107Y 0.22 tolerated(0.09) benign(0.008) TCGA-EE-A2GO-06 20 51870681 51870681 C T TSHZ2 Silent p.V228V 0.32 TCGA-EE-A2GO-06 20 56139333 56139333 T C PCK1 Missense_Mutation p.F357S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 20 57766181 57766181 C T ZNF831 Missense_Mutation p.T36I 0.49 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GO-06 20 57768049 57768049 C T ZNF831 Missense_Mutation p.P659S 0.49 deleterious(0.01) possibly_damaging(0.863) TCGA-EE-A2GO-06 20 57769221 57769221 G A ZNF831 Silent p.R1049R 0.32 TCGA-EE-A2GO-06 20 57875834 57875834 C T EDN3 5'UTR 0.41 TCGA-EE-A2GO-06 20 60775749 60775749 C T MTG2 Silent p.I279I 0.23 TCGA-EE-A2GO-06 20 6091073 6091073 G A FERMT1 Silent p.F206F 0.44 TCGA-EE-A2GO-06 20 61461898 61461898 C T COL9A3 Silent p.G415G 0.31 TCGA-EE-A2GO-06 20 61526218 61526218 G A DIDO1 Missense_Mutation p.P794S 0.51 benign(0.009) TCGA-EE-A2GO-06 20 61594692 61594692 G A SLC17A9 Nonsense_Mutation p.W232* 0.20 TCGA-EE-A2GO-06 20 61937321 61937321 G A COL20A1 Silent p.G142G 0.23 TCGA-EE-A2GO-06 20 62195163 62195163 G T HELZ2 Missense_Mutation p.A1671D 0.44 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GO-06 20 62373945 62373945 T A SLC2A4RG Missense_Mutation p.C313S 0.27 tolerated(0.08) benign(0.158) TCGA-EE-A2GO-06 20 62839420 62839420 G A MYT1 Missense_Mutation p.E291K 0.25 benign(0.272) TCGA-EE-A2GO-06 20 742357 742357 C T SLC52A3 Silent p.G395G 0.25 TCGA-EE-A2GO-06 20 8609078 8609078 G A PLCB1 Silent p.K128K 0.49 TCGA-EE-A2GO-06 20 8713928 8713928 G A PLCB1 Silent p.G644G 0.22 TCGA-EE-A2GO-06 20 9319589 9319589 G A PLCB4 Missense_Mutation p.D92N 0.58 tolerated(0.62) benign(0.003) TCGA-EE-A2GO-06 20 9404525 9404525 G A PLCB4 Missense_Mutation p.G805E 0.26 tolerated(0.1) probably_damaging(0.984) TCGA-EE-A2GO-06 20 9520183 9520183 C T PAK7 Missense_Mutation p.G696R 0.48 tolerated(0.35) benign(0.007) TCGA-EE-A2GO-06 20 9543669 9543669 G A PAK7 Silent p.V495V 0.23 TCGA-EE-A2GO-06 20 9546761 9546761 C T PAK7 Missense_Mutation p.D421N 0.10 tolerated(0.29) possibly_damaging(0.454) TCGA-EE-A2GO-06 20 9547019 9547019 G A PAK7 Nonsense_Mutation p.R335* 0.24 TCGA-EE-A2GO-06 21 10934955 10934955 G A TPTE Nonsense_Mutation p.R280* 0.11 TCGA-EE-A2GO-06 21 10998289 10998289 C T TPTE RNA 0.14 TCGA-EE-A2GO-06 21 27086951 27086951 G A JAM2 3'Flank 0.94 TCGA-EE-A2GO-06 21 30318520 30318520 T C LTN1 Missense_Mutation p.I1239V 0.91 tolerated(0.81) benign(0.007) TCGA-EE-A2GO-06 21 31538579 31538579 C T CLDN17 Silent p.L119L 0.90 TCGA-EE-A2GO-06 21 31692245 31692245 C T KRTAP26-1 Missense_Mutation p.G37R 0.86 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 21 34011288 34011288 G A SYNJ1 Missense_Mutation p.T1321I 0.53 tolerated_low_confidence(0.11) benign(0.252) TCGA-EE-A2GO-06 21 38380460 38380460 C T RIPPLY3 Silent p.P36P 0.36 TCGA-EE-A2GO-06 21 38538282 38538282 C T TTC3 Missense_Mutation p.P1256S 0.95 tolerated(0.66) benign(0.012) TCGA-EE-A2GO-06 21 41165499 41165499 G A IGSF5 Missense_Mutation p.D363N 0.44 tolerated(0.39) possibly_damaging(0.811) TCGA-EE-A2GO-06 21 41559082 41559082 C T DSCAM Missense_Mutation p.D919N 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2GO-06 21 41561075 41561075 G A DSCAM Missense_Mutation p.P816L 0.21 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GO-06 21 42080614 42080614 G A DSCAM Silent p.L43L 0.43 TCGA-EE-A2GO-06 21 42830496 42830496 C T MX1 Silent p.I600I 0.23 TCGA-EE-A2GO-06 21 43161697 43161697 G A RIPK4 Silent p.I552I 0.57 TCGA-EE-A2GO-06 21 43504234 43504234 C T UMODL1 Silent p.A120A 0.42 TCGA-EE-A2GO-06 21 43708164 43708164 G A ABCG1 Missense_Mutation p.R380Q 0.21 tolerated(0.59) benign(0) TCGA-EE-A2GO-06 21 43838665 43838665 G A UBASH3A Silent p.L331L 0.24 TCGA-EE-A2GO-06 21 44151975 44151975 G A PDE9A Missense_Mutation p.E120K 0.10 tolerated(0.76) benign(0.001) TCGA-EE-A2GO-06 21 44492180 44492180 G A CBS Silent p.L42L 0.46 TCGA-EE-A2GO-06 21 44949764 44949764 G A HSF2BP Missense_Mutation p.S292L 0.23 tolerated(1) benign(0.016) TCGA-EE-A2GO-06 21 45712878 45712878 C T AIRE Silent p.L366L 0.34 TCGA-EE-A2GO-06 21 45712879 45712879 C T AIRE Missense_Mutation p.P367S 0.33 tolerated(0.42) benign(0.008) TCGA-EE-A2GO-06 21 45786747 45786747 G A TRPM2 Silent p.K178K 0.18 TCGA-EE-A2GO-06 21 45994736 45994736 C T KRTAP10-4 Silent p.P367P 0.18 TCGA-EE-A2GO-06 21 46000282 46000282 G A KRTAP10-5 Silent p.P58P 0.16 TCGA-EE-A2GO-06 21 46101721 46101721 G A KRTAP12-1 3'UTR 0.43 TCGA-EE-A2GO-06 21 47542410 47542410 G A COL6A2 Missense_Mutation p.G525R 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 21 47716086 47716086 C T YBEY Missense_Mutation p.T117I 0.36 deleterious(0.04) possibly_damaging(0.507) TCGA-EE-A2GO-06 21 47716087 47716087 C T YBEY Silent p.T117T 0.35 TCGA-EE-A2GO-06 21 47766795 47766795 C G PCNT Missense_Mutation p.R287G 0.29 probably_damaging(0.934) TCGA-EE-A2GO-06 21 47978182 47978182 C T DIP2A Missense_Mutation p.A1282V 0.35 deleterious(0) benign(0) TCGA-EE-A2GO-06 22 16279245 16279245 T A POTEH Missense_Mutation p.K326N 0.04 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 22 17688074 17688074 G A CECR1 Silent p.I143I 0.49 TCGA-EE-A2GO-06 22 17983973 17983973 C T CECR2 Silent p.S224S 0.27 TCGA-EE-A2GO-06 22 18022354 18022354 G A CECR2 Missense_Mutation p.R820Q 0.17 tolerated_low_confidence(0.11) benign(0.021) TCGA-EE-A2GO-06 22 18028669 18028669 C T CECR2 Missense_Mutation p.P1210L 0.25 tolerated(0.19) benign(0.009) TCGA-EE-A2GO-06 22 18300865 18300865 G A MICAL3 Missense_Mutation p.P1521L 0.23 probably_damaging(0.998) TCGA-EE-A2GO-06 22 19178917 19178917 G A CLTCL1 Silent p.L1408L 0.19 TCGA-EE-A2GO-06 22 19226876 19226876 T A CLTCL1 Silent p.G239G 0.46 TCGA-EE-A2GO-06 22 19349263 19349263 G A HIRA Missense_Mutation p.S656F 0.11 deleterious(0.04) benign(0.429) TCGA-EE-A2GO-06 22 20302981 20302981 G A DGCR6L Missense_Mutation p.R131C 0.38 deleterious(0) possibly_damaging(0.655) TCGA-EE-A2GO-06 22 21065061 21065061 G A PI4KA Silent p.I2003I 0.28 TCGA-EE-A2GO-06 22 21327711 21327711 C T AIFM3 Silent p.F49F 0.44 TCGA-EE-A2GO-06 22 21340172 21340172 C T LZTR1 Silent p.D102D 0.17 TCGA-EE-A2GO-06 22 21363463 21363463 G A AC002472.1 5'Flank 0.16 TCGA-EE-A2GO-06 22 21801041 21801041 G A HIC2 3'UTR 0.50 TCGA-EE-A2GO-06 22 21990776 21990776 C T CCDC116 Missense_Mutation p.S420L 0.24 tolerated(0.05) probably_damaging(0.955) TCGA-EE-A2GO-06 22 22020299 22020299 G A PPIL2 5'UTR 0.44 TCGA-EE-A2GO-06 22 22786548 22786548 C T IGLV1-36 Missense_Mutation p.P33L 0.26 deleterious_low_confidence(0) benign(0.012) TCGA-EE-A2GO-06 22 23029462 23029462 G A IGLV3-25 Missense_Mutation p.E22K 0.47 tolerated(0.62) benign(0.03) TCGA-EE-A2GO-06 22 23437907 23437907 G A GNAZ Missense_Mutation p.E9K 0.26 deleterious(0.05) possibly_damaging(0.874) TCGA-EE-A2GO-06 22 24036014 24036014 G A RGL4 Silent p.G255G 0.40 TCGA-EE-A2GO-06 22 24580780 24580780 C T SUSD2 Silent p.Y218Y 0.21 TCGA-EE-A2GO-06 22 25144919 25144919 C T PIWIL3 Silent p.P468P 0.20 TCGA-EE-A2GO-06 22 25151811 25151811 G A PIWIL3 Missense_Mutation p.S211F 0.58 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2GO-06 22 25294011 25294011 C T SGSM1 Missense_Mutation p.P754S 0.33 tolerated(0.13) benign(0.006) TCGA-EE-A2GO-06 22 25294301 25294301 C T SGSM1 Silent p.F850F 0.45 TCGA-EE-A2GO-06 22 26242110 26242110 C T MYO18B Missense_Mutation p.P1138S 0.33 tolerated(0.35) possibly_damaging(0.71) TCGA-EE-A2GO-06 22 26854504 26854504 G A HPS4 Missense_Mutation p.H585Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 22 26932425 26932425 G A TPST2 Silent p.I290I 0.23 TCGA-EE-A2GO-06 22 28193474 28193474 C T MN1 Missense_Mutation p.D1020N 0.24 probably_damaging(0.982) TCGA-EE-A2GO-06 22 29834864 29834864 G A RFPL1 Silent p.V28V 0.40 TCGA-EE-A2GO-06 22 30765589 30765589 C T CCDC157 Silent p.P139P 0.40 TCGA-EE-A2GO-06 22 31011750 31011750 T G TCN2 Missense_Mutation p.F306V 0.21 tolerated(0.08) benign(0.118) TCGA-EE-A2GO-06 22 31059357 31059357 G A DUSP18 3'UTR 0.22 TCGA-EE-A2GO-06 22 31266560 31266560 C T OSBP2 Missense_Mutation p.S333F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 22 31486825 31486825 C T SMTN Silent p.S299S 0.38 TCGA-EE-A2GO-06 22 32275631 32275631 C T DEPDC5 Missense_Mutation p.P1300L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 22 32333918 32333918 G A C22orf24 Silent p.V45V 0.26 TCGA-EE-A2GO-06 22 32586859 32586859 G A RFPL2 Missense_Mutation p.P346L 0.25 tolerated(0.27) possibly_damaging(0.571) TCGA-EE-A2GO-06 22 32804216 32804216 G A RTCB Silent p.F62F 0.34 TCGA-EE-A2GO-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 22 37196794 37196794 G A PVALB 3'UTR 0.17 TCGA-EE-A2GO-06 22 37414702 37414702 C T TST Silent p.K24K 0.29 TCGA-EE-A2GO-06 22 37688702 37688702 G C CYTH4 Missense_Mutation p.Q20H 0.21 deleterious(0.03) benign(0.332) TCGA-EE-A2GO-06 22 37887776 37887776 A G CARD10 Silent p.N950N 0.25 TCGA-EE-A2GO-06 22 38121779 38121779 G A TRIOBP Silent p.R1072R 0.83 TCGA-EE-A2GO-06 22 38891910 38891910 G A DDX17 Silent p.A257A 0.19 TCGA-EE-A2GO-06 22 40217025 40217025 C T ENTHD1 Missense_Mutation p.E269K 0.13 deleterious(0.05) benign(0.021) TCGA-EE-A2GO-06 22 41277848 41277848 G T XPNPEP3 Nonsense_Mutation p.E86* 0.22 TCGA-EE-A2GO-06 22 41573662 41573662 G A EP300 Missense_Mutation p.G1983R 0.25 benign(0.4) TCGA-EE-A2GO-06 22 41609932 41609932 G A L3MBTL2 Missense_Mutation p.E100K 0.27 deleterious(0.03) benign(0.04) TCGA-EE-A2GO-06 22 42149986 42149986 C T MEI1 Silent p.F629F 0.68 TCGA-EE-A2GO-06 22 42970719 42970719 T G SERHL2 3'Flank 0.25 TCGA-EE-A2GO-06 22 43015823 43015823 G A CYB5R3 Silent p.L321L 0.23 TCGA-EE-A2GO-06 22 43537198 43537198 C G MCAT Missense_Mutation p.V161L 0.63 deleterious(0) probably_damaging(0.952) TCGA-EE-A2GO-06 22 43619137 43619137 G A SCUBE1 Silent p.F431F 0.17 TCGA-EE-A2GO-06 22 44893344 44893344 G A LDOC1L Silent p.S31S 0.21 TCGA-EE-A2GO-06 22 50655665 50655665 C T SELO Missense_Mutation p.P626L 0.71 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 102851517 102851517 T G IL1RL2 Missense_Mutation p.I486M 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 102955354 102955354 G A IL1RL1 Missense_Mutation p.G40E 0.39 tolerated(1) benign(0.02) TCGA-EE-A2GO-06 2 103067444 103067444 C T IL18RAP Silent p.S449S 0.32 TCGA-EE-A2GO-06 2 103125368 103125368 C T SLC9A4 Silent p.S488S 0.50 TCGA-EE-A2GO-06 2 103414385 103414385 T A TMEM182 Missense_Mutation p.F132Y 0.60 deleterious(0) probably_damaging(0.95) TCGA-EE-A2GO-06 2 107041658 107041658 C T RGPD3 Missense_Mutation p.G922E 0.38 deleterious(0.02) benign(0.325) TCGA-EE-A2GO-06 2 107049638 107049638 C T RGPD3 Missense_Mutation p.R770Q 0.14 tolerated(0.51) benign(0.42) TCGA-EE-A2GO-06 2 107459497 107459497 C T ST6GAL2 Missense_Mutation p.E313K 0.46 probably_damaging(0.936) TCGA-EE-A2GO-06 2 108507247 108507247 G A RGPD4 3'UTR 0.70 TCGA-EE-A2GO-06 2 109002789 109002789 G A SULT1C4 Missense_Mutation p.E253K 0.30 tolerated(0.42) benign(0.002) TCGA-EE-A2GO-06 2 11053986 11053986 C T KCNF1 Silent p.P478P 0.60 TCGA-EE-A2GO-06 2 112786220 112786220 G A MERTK Missense_Mutation p.G927R 0.28 deleterious(0.05) benign(0.197) TCGA-EE-A2GO-06 2 112942913 112942913 C T FBLN7 Missense_Mutation p.P315L 0.30 deleterious(0.03) benign(0.169) TCGA-EE-A2GO-06 2 113089185 113089185 C T ZC3H6 Missense_Mutation p.S897L 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2GO-06 2 113342131 113342131 A C CHCHD5 5'UTR 0.29 TCGA-EE-A2GO-06 2 113513652 113513652 C T CKAP2L Silent p.L432L 0.27 TCGA-EE-A2GO-06 2 113780333 113780333 G A IL36B Missense_Mutation p.S138F 0.26 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GO-06 2 113999598 113999598 C T PAX8 Silent p.R196R 0.26 TCGA-EE-A2GO-06 2 114480716 114480716 G A SLC35F5 Missense_Mutation p.P436S 0.68 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GO-06 2 1161305 1161305 T C SNTG2 Silent p.F161F 0.36 TCGA-EE-A2GO-06 2 1168823 1168823 C T SNTG2 Missense_Mutation p.P182L 0.34 tolerated(0.09) probably_damaging(0.989) TCGA-EE-A2GO-06 2 118588354 118588354 C T DDX18 3'UTR 0.50 TCGA-EE-A2GO-06 2 11943103 11943103 C T LPIN1 Missense_Mutation p.P702S 0.54 tolerated(0.38) benign(0.008) TCGA-EE-A2GO-06 2 119750026 119750026 G A MARCO Missense_Mutation p.G409E 0.34 deleterious(0) unknown(0) TCGA-EE-A2GO-06 2 120003148 120003148 G A STEAP3 Missense_Mutation p.D36N 0.32 tolerated(0.52) benign(0.001) TCGA-EE-A2GO-06 2 120362261 120362261 G A PCDP1 Missense_Mutation p.E269K 0.33 tolerated(0.21) benign(0.012) TCGA-EE-A2GO-06 2 120720232 120720232 C T PTPN4 Missense_Mutation p.S774L 0.46 tolerated(0.31) benign(0.063) TCGA-EE-A2GO-06 2 120723175 120723175 C G PTPN4 Missense_Mutation p.R838G 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 2 121747440 121747440 C T GLI2 Missense_Mutation p.P1317L 0.15 tolerated_low_confidence(0.2) benign(0.001) TCGA-EE-A2GO-06 2 121747836 121747836 G A GLI2 Missense_Mutation p.G1449D 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.29 TCGA-EE-A2GO-06 2 128408356 128408356 C T GPR17 Missense_Mutation p.S44F 0.24 deleterious(0) benign(0.059) TCGA-EE-A2GO-06 2 130725803 130725803 G A RAB6C-AS1 RNA 0.50 TCGA-EE-A2GO-06 2 132238134 132238134 G A TUBA3D Missense_Mutation p.E290K 0.33 deleterious_low_confidence(0) benign(0.368) TCGA-EE-A2GO-06 2 135119899 135119899 T A MGAT5 Missense_Mutation p.S434T 0.38 tolerated(0.28) benign(0.002) TCGA-EE-A2GO-06 2 135621190 135621190 C T ACMSD Missense_Mutation p.P159S 0.31 deleterious(0.04) benign(0.235) TCGA-EE-A2GO-06 2 136473261 136473261 C T R3HDM1 Nonsense_Mutation p.Q925* 0.56 TCGA-EE-A2GO-06 2 136569973 136569973 C T LCT Missense_Mutation p.G754E 0.32 tolerated(0.62) possibly_damaging(0.708) TCGA-EE-A2GO-06 2 149216377 149216377 C T MBD5 Missense_Mutation p.P17L 0.25 tolerated(0.09) possibly_damaging(0.851) TCGA-EE-A2GO-06 2 152418643 152418643 G A NEB Missense_Mutation p.S6326L 0.37 possibly_damaging(0.629) TCGA-EE-A2GO-06 2 152506828 152506828 C T NEB Silent p.E2431E 0.19 TCGA-EE-A2GO-06 2 15432844 15432844 C T NBAS Missense_Mutation p.R1615Q 0.57 tolerated(0.65) benign(0.001) TCGA-EE-A2GO-06 2 155711305 155711305 C T KCNJ3 Missense_Mutation p.P329L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 160735213 160735213 T G LY75-CD302 Missense_Mutation p.E512A 0.38 deleterious(0.04) benign(0.04) TCGA-EE-A2GO-06 2 162821573 162821573 G A SLC4A10 Missense_Mutation p.V1017I 0.38 tolerated(0.4) probably_damaging(0.986) TCGA-EE-A2GO-06 2 162821594 162821594 G C SLC4A10 Missense_Mutation p.D1024H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 2 163374419 163374419 G A KCNH7 Missense_Mutation p.S238F 0.40 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A2GO-06 2 166172038 166172038 G A SCN2A Missense_Mutation p.G481R 0.27 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GO-06 2 166771803 166771803 G A TTC21B Silent p.A682A 0.38 TCGA-EE-A2GO-06 2 166848852 166848852 G C SCN1A Missense_Mutation p.R1645G 0.30 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GO-06 2 166897763 166897763 T A SCN1A Missense_Mutation p.N798I 0.26 tolerated(0.07) benign(0.001) TCGA-EE-A2GO-06 2 167301440 167301440 A G SCN7A Silent p.N486N 0.40 TCGA-EE-A2GO-06 2 167328849 167328849 C T SCN7A Missense_Mutation p.D184N 0.50 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 2 168099266 168099266 C T XIRP2 Missense_Mutation p.P455L 0.15 probably_damaging(1) TCGA-EE-A2GO-06 2 168099832 168099832 C T XIRP2 Missense_Mutation p.P644S 0.44 probably_damaging(1) TCGA-EE-A2GO-06 2 168101077 168101077 T A XIRP2 Missense_Mutation p.F1059I 0.44 probably_damaging(1) TCGA-EE-A2GO-06 2 168101504 168101504 G A XIRP2 Missense_Mutation p.R1201K 0.16 benign(0.011) TCGA-EE-A2GO-06 2 170097612 170097612 G A LRP2 Missense_Mutation p.R1311C 0.31 possibly_damaging(0.556) TCGA-EE-A2GO-06 2 171702532 171702532 C T GAD1 Missense_Mutation p.P321S 0.23 deleterious(0.02) benign(0.438) TCGA-EE-A2GO-06 2 171702533 171702533 C T GAD1 Missense_Mutation p.P321L 0.23 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2GO-06 2 175613498 175613498 C T CHRNA1 Missense_Mutation p.R376K 0.73 deleterious(0.03) possibly_damaging(0.803) TCGA-EE-A2GO-06 2 17697677 17697677 G A RAD51AP2 Missense_Mutation p.S669F 0.30 tolerated(0.14) possibly_damaging(0.557) TCGA-EE-A2GO-06 2 178986073 178986073 T C RBM45 Silent p.P280P 0.51 TCGA-EE-A2GO-06 2 179431061 179431061 T C TTN Missense_Mutation p.K26600E 0.22 TCGA-EE-A2GO-06 2 179432670 179432670 G A TTN Silent p.F26063F 0.33 TCGA-EE-A2GO-06 2 179575987 179575987 C T TTN Missense_Mutation p.G9326R 0.21 TCGA-EE-A2GO-06 2 179605489 179605489 G A TTN Silent p.S4157S 0.40 TCGA-EE-A2GO-06 2 179616667 179616667 C T TTN Intron 0.35 TCGA-EE-A2GO-06 2 179631253 179631253 G A TTN Silent p.I3186I 0.30 TCGA-EE-A2GO-06 2 179633403 179633403 C T TTN Missense_Mutation p.E3054K 0.50 TCGA-EE-A2GO-06 2 179633410 179633410 A G TTN Silent p.L3051L 0.52 TCGA-EE-A2GO-06 2 179640501 179640501 G A TTN Silent p.L2030L 0.33 TCGA-EE-A2GO-06 2 179641338 179641338 G A TTN Silent p.L1751L 0.33 TCGA-EE-A2GO-06 2 179643720 179643720 A T TTN Silent p.T1363T 0.27 TCGA-EE-A2GO-06 2 179656855 179656855 C T TTN Missense_Mutation p.E536K 0.59 TCGA-EE-A2GO-06 2 179666956 179666956 G A TTN Silent p.P68P 0.31 TCGA-EE-A2GO-06 2 182402939 182402939 C T CERKL Missense_Mutation p.G550E 0.56 tolerated(0.32) benign(0.005) TCGA-EE-A2GO-06 2 182779945 182779945 T C SSFA2 Silent p.V526V 0.57 TCGA-EE-A2GO-06 2 183088673 183088673 C T PDE1A Missense_Mutation p.E248K 0.48 deleterious(0) possibly_damaging(0.779) TCGA-EE-A2GO-06 2 183989119 183989119 G A NUP35 5'UTR 0.44 TCGA-EE-A2GO-06 2 185798344 185798344 G A ZNF804A Silent p.L90L 0.30 TCGA-EE-A2GO-06 2 185802602 185802602 G A ZNF804A Missense_Mutation p.E827K 0.26 tolerated(0.24) probably_damaging(0.956) TCGA-EE-A2GO-06 2 189849500 189849500 T A COL3A1 Missense_Mutation p.C32S 0.33 unknown(0) TCGA-EE-A2GO-06 2 189849503 189849503 T A COL3A1 Missense_Mutation p.S33T 0.31 unknown(0) TCGA-EE-A2GO-06 2 189858803 189858803 G A COL3A1 Missense_Mutation p.E397K 0.30 unknown(0) TCGA-EE-A2GO-06 2 189866135 189866135 C T COL3A1 Missense_Mutation p.P766S 0.48 unknown(0) TCGA-EE-A2GO-06 2 190617653 190617653 A C OSGEPL1 Missense_Mutation p.I339S 0.35 tolerated(0.2) benign(0.099) TCGA-EE-A2GO-06 2 190617654 190617654 T A OSGEPL1 Missense_Mutation p.I339F 0.37 tolerated(0.36) benign(0.021) TCGA-EE-A2GO-06 2 192251958 192251958 C T MYO1B Silent p.Y521Y 0.29 TCGA-EE-A2GO-06 2 192701079 192701079 G A SDPR Missense_Mutation p.S283F 0.62 deleterious(0) possibly_damaging(0.83) TCGA-EE-A2GO-06 2 196720695 196720695 G A DNAH7 Missense_Mutation p.P2812L 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 2 196728987 196728987 A T DNAH7 Missense_Mutation p.H2464Q 0.63 deleterious(0.02) benign(0) TCGA-EE-A2GO-06 2 196834754 196834754 G A DNAH7 Missense_Mutation p.S708L 0.41 tolerated(0.17) benign(0.01) TCGA-EE-A2GO-06 2 196837181 196837181 G A DNAH7 Nonsense_Mutation p.Q615* 0.67 TCGA-EE-A2GO-06 2 197081817 197081817 C T HECW2 Missense_Mutation p.G1470E 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 2 201460080 201460080 C T AOX1 Silent p.T63T 0.30 TCGA-EE-A2GO-06 2 202052438 202052438 C T CASP10 Silent p.L119L 0.22 TCGA-EE-A2GO-06 2 202153479 202153479 C T ALS2CR12 Missense_Mutation p.E413K 0.24 deleterious(0.01) possibly_damaging(0.783) TCGA-EE-A2GO-06 2 203630544 203630544 G A FAM117B 3'UTR 0.59 TCGA-EE-A2GO-06 2 203644281 203644281 G A ICA1L Missense_Mutation p.S475L 0.34 deleterious(0) possibly_damaging(0.745) TCGA-EE-A2GO-06 2 203690476 203690476 A G ICA1L Silent p.V59V 0.33 TCGA-EE-A2GO-06 2 204305456 204305456 G T RAPH1 Missense_Mutation p.F819L 0.33 possibly_damaging(0.483) TCGA-EE-A2GO-06 2 207170236 207170236 G A ZDBF2 Silent p.K328K 0.48 TCGA-EE-A2GO-06 2 207172522 207172522 G A ZDBF2 Silent p.A1090A 0.27 TCGA-EE-A2GO-06 2 209309571 209309571 C T PTH2R Missense_Mutation p.S271L 0.23 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A2GO-06 2 210658505 210658505 C T UNC80 Missense_Mutation p.S287L 0.65 benign(0.44) TCGA-EE-A2GO-06 2 211438116 211438116 A T CPS1 Missense_Mutation p.N80I 0.43 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 2 212285327 212285327 G A ERBB4 Missense_Mutation p.R992C 0.27 tolerated(0.17) benign(0.014) TCGA-EE-A2GO-06 2 214878736 214878736 C T SPAG16 Missense_Mutation p.P488S 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2GO-06 2 215839566 215839566 C T ABCA12 Missense_Mutation p.A1802T 0.50 tolerated(0.44) benign(0.111) TCGA-EE-A2GO-06 2 215890438 215890438 C T ABCA12 Missense_Mutation p.E416K 0.53 tolerated(0.48) benign(0.044) TCGA-EE-A2GO-06 2 216289873 216289873 C T FN1 Missense_Mutation p.G327E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 217525339 217525339 A G IGFBP2 Missense_Mutation p.N168D 0.41 tolerated(0.37) benign(0.108) TCGA-EE-A2GO-06 2 219000488 219000488 C T CXCR2 Missense_Mutation p.R322C 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GO-06 2 219232608 219232608 C T C2orf62 Missense_Mutation p.P362L 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A2GO-06 2 219360674 219360674 C T USP37 Splice_Site p.X428_splice 0.27 TCGA-EE-A2GO-06 2 219695515 219695515 T C PRKAG3 Silent p.T61T 0.43 TCGA-EE-A2GO-06 2 220090285 220090285 G A ATG9A Silent p.L74L 0.76 TCGA-EE-A2GO-06 2 220161810 220161810 C T PTPRN Silent p.K711K 0.40 TCGA-EE-A2GO-06 2 220350099 220350099 G A SPEG Nonsense_Mutation p.W2547* 0.33 TCGA-EE-A2GO-06 2 220352923 220352923 C T SPEG Silent p.P2583P 0.28 TCGA-EE-A2GO-06 2 220352924 220352924 C T SPEG Missense_Mutation p.P2584S 0.28 probably_damaging(1) TCGA-EE-A2GO-06 2 224849630 224849630 G A SERPINE2 Silent p.F253F 0.67 TCGA-EE-A2GO-06 2 225637990 225637990 C T DOCK10 Missense_Mutation p.E2030K 0.19 deleterious(0.02) benign(0.118) TCGA-EE-A2GO-06 2 225684176 225684176 G A DOCK10 Missense_Mutation p.S1085F 0.57 tolerated(0.06) possibly_damaging(0.52) TCGA-EE-A2GO-06 2 227915728 227915728 C T COL4A4 Missense_Mutation p.G1039R 0.25 unknown(0) TCGA-EE-A2GO-06 2 227917034 227917034 G A COL4A4 Silent p.F985F 0.36 TCGA-EE-A2GO-06 2 228102734 228102734 G A COL4A3 Silent p.G46G 0.32 TCGA-EE-A2GO-06 2 228197204 228197204 C T MFF Missense_Mutation p.P110L 0.36 tolerated(0.46) benign(0.019) TCGA-EE-A2GO-06 2 228783568 228783568 C T DAW1 Missense_Mutation p.S349L 0.25 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A2GO-06 2 228882158 228882158 C T SPHKAP Missense_Mutation p.E1138K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 2 228883067 228883067 G A SPHKAP Silent p.L835L 0.39 TCGA-EE-A2GO-06 2 230924029 230924029 C T SLC16A14 Missense_Mutation p.D14N 0.21 deleterious_low_confidence(0.03) benign(0.274) TCGA-EE-A2GO-06 2 231135334 231135334 G A SP140 Missense_Mutation p.G493E 0.38 tolerated(0.12) possibly_damaging(0.566) TCGA-EE-A2GO-06 2 231176246 231176246 C T SP140 Missense_Mutation p.P814L 0.32 deleterious(0.02) benign(0.348) TCGA-EE-A2GO-06 2 231235655 231235655 G A SP140L Missense_Mutation p.E186K 0.43 tolerated(0.22) benign(0.312) TCGA-EE-A2GO-06 2 231740398 231740398 C T ITM2C Missense_Mutation p.R109W 0.29 deleterious(0.01) possibly_damaging(0.816) TCGA-EE-A2GO-06 2 233246398 233246398 C T ALPP Missense_Mutation p.P501S 0.11 tolerated(0.14) benign(0.003) TCGA-EE-A2GO-06 2 233272555 233272555 G A ALPPL2 Missense_Mutation p.G159E 0.58 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GO-06 2 233898884 233898884 C T NEU2 Missense_Mutation p.P87L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 234237186 234237186 C T SAG Missense_Mutation p.P192L 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GO-06 2 234545322 234545322 G A UGT1A10 Missense_Mutation p.G52R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 2 234545731 234545731 C T UGT1A10 Missense_Mutation p.S188F 0.41 deleterious(0) possibly_damaging(0.861) TCGA-EE-A2GO-06 2 234677029 234677029 G A UGT1A10 Silent p.L413L 0.45 TCGA-EE-A2GO-06 2 234754447 234754447 G A HJURP Missense_Mutation p.P141L 0.32 deleterious(0) possibly_damaging(0.461) TCGA-EE-A2GO-06 2 237032729 237032729 G A AGAP1 Missense_Mutation p.R846Q 0.39 tolerated(0.25) benign(0.178) TCGA-EE-A2GO-06 2 237032730 237032730 G A AGAP1 Silent p.R846R 0.41 TCGA-EE-A2GO-06 2 238277625 238277625 C T COL6A3 Missense_Mutation p.R1494K 0.30 benign(0.007) TCGA-EE-A2GO-06 2 238296322 238296322 G A COL6A3 Silent p.F405F 0.29 TCGA-EE-A2GO-06 2 239025581 239025581 C T ESPNL Missense_Mutation p.S298F 0.64 tolerated(0.21) benign(0.033) TCGA-EE-A2GO-06 2 240969589 240969589 G A OR6B2 Silent p.L86L 0.18 TCGA-EE-A2GO-06 2 240969784 240969784 T G OR6B2 Silent p.P21P 0.54 TCGA-EE-A2GO-06 2 241808435 241808435 G A AGXT Silent p.K51K 0.39 TCGA-EE-A2GO-06 2 25966040 25966040 C T ASXL2 Missense_Mutation p.E1056K 0.71 deleterious(0) possibly_damaging(0.827) TCGA-EE-A2GO-06 2 26698339 26698339 G A OTOF Missense_Mutation p.P1005L 0.31 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GO-06 2 27282264 27282264 C T AGBL5 Missense_Mutation p.P694L 0.30 tolerated_low_confidence(0.06) benign(0.067) TCGA-EE-A2GO-06 2 27461044 27461044 C G CAD Missense_Mutation p.R1617G 0.24 tolerated(0.07) possibly_damaging(0.564) TCGA-EE-A2GO-06 2 27559164 27559164 G A GTF3C2 Missense_Mutation p.S419F 0.30 deleterious(0) possibly_damaging(0.543) TCGA-EE-A2GO-06 2 27667965 27667965 G A IFT172 Silent p.P1692P 0.26 TCGA-EE-A2GO-06 2 27667966 27667966 G A IFT172 Missense_Mutation p.P1692L 0.25 deleterious(0.03) possibly_damaging(0.903) TCGA-EE-A2GO-06 2 29293904 29293904 G A C2orf71 Missense_Mutation p.T1075I 0.60 tolerated(0.09) benign(0.11) TCGA-EE-A2GO-06 2 29294311 29294311 C T C2orf71 Silent p.G939G 0.28 TCGA-EE-A2GO-06 2 29368224 29368224 C T CLIP4 Missense_Mutation p.P338S 0.33 tolerated(0.1) benign(0.262) TCGA-EE-A2GO-06 2 3392145 3392145 C T TRAPPC12 Missense_Mutation p.L251F 0.55 tolerated_low_confidence(0.56) possibly_damaging(0.668) TCGA-EE-A2GO-06 2 36706721 36706723 ACG CA CRIM1 Frame_Shift_Del p.D419Afs*28 0.34 TCGA-EE-A2GO-06 2 38178723 38178723 C T RMDN2 Missense_Mutation p.S122F 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.498) TCGA-EE-A2GO-06 2 42990815 42990815 G A OXER1 Missense_Mutation p.L169F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 2 42994629 42994629 G A HAAO Missense_Mutation p.S270F 0.39 deleterious(0) benign(0.422) TCGA-EE-A2GO-06 2 44102392 44102392 C T ABCG8 Silent p.F532F 0.30 TCGA-EE-A2GO-06 2 54128511 54128511 A C PSME4 Nonsense_Mutation p.Y1087* 0.24 TCGA-EE-A2GO-06 2 64322368 64322368 G A PELI1 Missense_Mutation p.S242L 0.22 deleterious(0) possibly_damaging(0.763) TCGA-EE-A2GO-06 2 68546484 68546484 G A CNRIP1 Nonsense_Mutation p.Q17* 0.21 TCGA-EE-A2GO-06 2 71887775 71887775 T C DYSF Missense_Mutation p.F1666S 0.26 deleterious(0) possibly_damaging(0.506) TCGA-EE-A2GO-06 2 73316153 73316153 C G RAB11FIP5 Missense_Mutation p.R241P 0.21 deleterious(0) possibly_damaging(0.827) TCGA-EE-A2GO-06 2 73675190 73675190 C T ALMS1 Silent p.S511S 0.58 TCGA-EE-A2GO-06 2 74326589 74326589 C T TET3 Silent p.L1017L 0.68 TCGA-EE-A2GO-06 2 74834299 74834299 C T M1AP Missense_Mutation p.E160K 0.27 tolerated(0.63) benign(0.005) TCGA-EE-A2GO-06 2 75115095 75115095 C T HK2 Missense_Mutation p.T762I 0.23 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 2 85894234 85894234 A G SFTPB Missense_Mutation p.F100L 0.27 tolerated(0.28) benign(0.044) TCGA-EE-A2GO-06 2 85923143 85923143 C T GNLY Silent p.V73V 0.44 TCGA-EE-A2GO-06 2 88478512 88478512 G A THNSL2 Missense_Mutation p.G261E 0.34 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 2 8871792 8871792 G A KIDINS220 Silent p.I1458I 0.69 TCGA-EE-A2GO-06 2 89117819 89117819 G A AC096579.13 RNA 0.31 TCGA-EE-A2GO-06 2 89160426 89160426 G A IGKJ4 Silent p.F3F 0.24 TCGA-EE-A2GO-06 2 89326904 89326904 C T IGKV3-11 Missense_Mutation p.E37K 0.67 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2GO-06 2 89339834 89339834 C T IGKV1-12 Missense_Mutation p.V80I 0.47 tolerated(0.13) benign(0.181) TCGA-EE-A2GO-06 2 89339835 89339835 C T IGKV1-12 Silent p.G79G 0.47 TCGA-EE-A2GO-06 2 89544390 89544390 G A IGKV2-30 Silent p.N78N 0.24 TCGA-EE-A2GO-06 2 90199187 90199187 C T IGKV1D-12 Silent p.F116F 0.29 TCGA-EE-A2GO-06 2 95815370 95815370 G A ZNF514 Missense_Mutation p.P287L 0.63 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GO-06 2 95940496 95940496 C T PROM2 Missense_Mutation p.R55C 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A2GO-06 2 97268003 97268003 G A KANSL3 Missense_Mutation p.R778C 0.50 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A2GO-06 2 9728293 9728293 C T YWHAQ Splice_Site p.X194_splice 0.67 TCGA-EE-A2GO-06 2 98274437 98274437 G A ACTR1B Silent p.I298I 0.25 TCGA-EE-A2GO-06 2 98834477 98834477 C T VWA3B Missense_Mutation p.P669S 0.15 tolerated(0.08) benign(0.103) TCGA-EE-A2GO-06 2 98834478 98834478 C T VWA3B Missense_Mutation p.P669L 0.15 tolerated(0.07) benign(0.062) TCGA-EE-A2GO-06 2 98846544 98846544 A G VWA3B Missense_Mutation p.T728A 0.27 tolerated(0.11) benign(0.006) TCGA-EE-A2GO-06 2 99013037 99013037 C T CNGA3 Silent p.I468I 0.35 TCGA-EE-A2GO-06 2 99767019 99767019 C T C2ORF15 Silent p.L34L 0.23 TCGA-EE-A2GO-06 3 100295867 100295867 G A TMEM45A 3'UTR 0.27 TCGA-EE-A2GO-06 3 100469349 100469349 C T ABI3BP Missense_Mutation p.G1073E 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 3 100964802 100964803 TG - IMPG2 Frame_Shift_Del p.H462Qfs*20 0.52 TCGA-EE-A2GO-06 3 102189291 102189291 C T ZPLD1 Silent p.P345P 0.21 TCGA-EE-A2GO-06 3 110852485 110852485 C A PVRL3 Missense_Mutation p.P358H 0.30 deleterious(0.02) possibly_damaging(0.78) TCGA-EE-A2GO-06 3 112190128 112190128 G A BTLA Missense_Mutation p.P160S 0.27 tolerated(0.31) benign(0.029) TCGA-EE-A2GO-06 3 112289432 112289432 C T SLC35A5 Missense_Mutation p.S92F 0.29 tolerated(0.7) benign(0.001) TCGA-EE-A2GO-06 3 112534802 112534802 C T CD200R1L 3'UTR 0.46 TCGA-EE-A2GO-06 3 112546003 112546003 G A CD200R1L Silent p.S172S 0.23 TCGA-EE-A2GO-06 3 118866261 118866261 G A C3orf30 Missense_Mutation p.E409K 0.67 tolerated(0.08) benign(0.156) TCGA-EE-A2GO-06 3 119134765 119134765 C T ARHGAP31 Missense_Mutation p.S1330F 0.24 deleterious(0) possibly_damaging(0.83) TCGA-EE-A2GO-06 3 119306719 119306719 C T ADPRH Silent p.S356S 0.23 TCGA-EE-A2GO-06 3 121411424 121411424 C T GOLGB1 Missense_Mutation p.E2263K 0.26 probably_damaging(0.996) TCGA-EE-A2GO-06 3 121810455 121810455 G A CD86 Missense_Mutation p.G8R 0.20 deleterious(0.04) possibly_damaging(0.474) TCGA-EE-A2GO-06 3 12211320 12211320 G A SYN2 RNA 0.59 TCGA-EE-A2GO-06 3 123456263 123456263 G A MYLK Missense_Mutation p.S239L 0.28 tolerated(0.56) benign(0.073) TCGA-EE-A2GO-06 3 124646426 124646426 G A MUC13 Missense_Mutation p.P155L 0.31 tolerated(0.13) benign(0.055) TCGA-EE-A2GO-06 3 125836898 125836898 C T ALDH1L1 Silent p.R654R 0.14 TCGA-EE-A2GO-06 3 126133021 126133021 C T CCDC37 Missense_Mutation p.S75F 0.39 deleterious(0.05) benign(0.004) TCGA-EE-A2GO-06 3 126137599 126137599 C T CCDC37 Missense_Mutation p.S211F 0.36 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A2GO-06 3 126189851 126189851 C T ZXDC Missense_Mutation p.R386Q 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A2GO-06 3 126216955 126216955 C T UROC1 Silent p.Q519Q 0.57 TCGA-EE-A2GO-06 3 126261259 126261259 C T CHST13 Silent p.F288F 0.70 TCGA-EE-A2GO-06 3 12977982 12977982 G A IQSEC1 Silent p.F192F 0.64 TCGA-EE-A2GO-06 3 134085135 134085135 C T AMOTL2 Silent p.R392R 0.37 TCGA-EE-A2GO-06 3 134085136 134085136 C T AMOTL2 Missense_Mutation p.R392Q 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GO-06 3 13420450 13420450 G A NUP210 Missense_Mutation p.P336L 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2GO-06 3 135801250 135801250 A G PPP2R3A Silent p.R925R 0.37 TCGA-EE-A2GO-06 3 136342016 136342016 C T STAG1 Missense_Mutation p.R35K 0.53 tolerated(1) benign(0) TCGA-EE-A2GO-06 3 13672196 13672196 C T FBLN2 Intron 0.69 TCGA-EE-A2GO-06 3 137880596 137880596 G A DBR1 3'UTR 0.43 TCGA-EE-A2GO-06 3 138340342 138340342 G A FAIM Silent p.G58G 0.33 TCGA-EE-A2GO-06 3 13860547 13860547 G A WNT7A Missense_Mutation p.T315I 0.53 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GO-06 3 138669176 138669176 G A C3orf72 Missense_Mutation p.G97E 0.34 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2GO-06 3 138738914 138738914 G A PRR23B Missense_Mutation p.P197L 0.30 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A2GO-06 3 140406823 140406823 C T TRIM42 Silent p.A433A 0.60 TCGA-EE-A2GO-06 3 140785549 140785549 C T SPSB4 Silent p.F201F 0.29 TCGA-EE-A2GO-06 3 142408469 142408469 G A PLS1 Missense_Mutation p.D331N 0.08 tolerated(0.57) probably_damaging(0.997) TCGA-EE-A2GO-06 3 146167090 146167090 C T PLSCR2 Missense_Mutation p.R256K 0.23 tolerated(0.68) benign(0.108) TCGA-EE-A2GO-06 3 14755532 14755532 C T C3orf20 Silent p.V393V 0.18 TCGA-EE-A2GO-06 3 14763184 14763184 G A C3orf20 Missense_Mutation p.V487I 0.56 tolerated(0.23) benign(0.133) TCGA-EE-A2GO-06 3 148559660 148559660 C T CPB1 Silent p.F175F 0.25 TCGA-EE-A2GO-06 3 150931652 150931652 G A P2RY14 Silent p.L151L 0.25 TCGA-EE-A2GO-06 3 151154752 151154752 G A IGSF10 Missense_Mutation p.R2533C 0.30 deleterious(0) probably_damaging(0.953) TCGA-EE-A2GO-06 3 151164700 151164700 G A IGSF10 Silent p.I1023I 0.27 TCGA-EE-A2GO-06 3 151545949 151545949 G A AADAC Missense_Mutation p.E397K 0.28 tolerated(0.37) benign(0.011) TCGA-EE-A2GO-06 3 154056018 154056018 C T GPR149 Missense_Mutation p.G556R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 3 154056019 154056019 C T GPR149 Silent p.Q555Q 0.33 TCGA-EE-A2GO-06 3 155198957 155198957 G A PLCH1 Missense_Mutation p.R1628C 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GO-06 3 155547507 155547507 G A SLC33A1 Silent p.N484N 0.38 TCGA-EE-A2GO-06 3 161147348 161147348 G A RP11-3P17.5 RNA 0.15 TCGA-EE-A2GO-06 3 16254124 16254124 G A GALNT15 Missense_Mutation p.G416R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 3 16364959 16364959 C T RFTN1 Missense_Mutation p.G419E 0.23 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 3 164907332 164907332 C T SLITRK3 Nonsense_Mutation p.W429* 0.38 TCGA-EE-A2GO-06 3 166960340 166960340 G A ZBBX Silent p.F782F 0.22 TCGA-EE-A2GO-06 3 168834376 168834376 C T MECOM Silent p.E305E 0.24 TCGA-EE-A2GO-06 3 170198805 170198805 G A SLC7A14 Silent p.V422V 0.35 TCGA-EE-A2GO-06 3 175189488 175189488 G A NAALADL2 Missense_Mutation p.R532K 0.50 tolerated(0.08) benign(0.026) TCGA-EE-A2GO-06 3 175189489 175189489 G A NAALADL2 Silent p.R532R 0.50 TCGA-EE-A2GO-06 3 180327541 180327541 C T TTC14 Silent p.N508N 0.66 TCGA-EE-A2GO-06 3 183777221 183777221 C T HTR3C Intron 0.29 TCGA-EE-A2GO-06 3 183777411 183777411 G A HTR3C Missense_Mutation p.S303N 0.30 tolerated(0.39) benign(0.073) TCGA-EE-A2GO-06 3 183995169 183995169 G A ECE2 Silent p.R249R 0.58 TCGA-EE-A2GO-06 3 184008617 184008617 C T ECE2 Silent p.G719G 0.58 TCGA-EE-A2GO-06 3 185155407 185155407 C T MAP3K13 Silent p.I216I 0.38 TCGA-EE-A2GO-06 3 186276299 186276299 G A TBCCD1 Silent p.S133S 0.29 TCGA-EE-A2GO-06 3 186276300 186276300 G A TBCCD1 Missense_Mutation p.S133F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 3 186338420 186338420 C T AHSG Missense_Mutation p.P269S 0.32 tolerated(0.14) benign(0.082) TCGA-EE-A2GO-06 3 186437937 186437937 A T KNG1 Missense_Mutation p.E80V 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 3 186572111 186572111 G A ADIPOQ Missense_Mutation p.G118E 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 3 186760694 186760694 C T ST6GAL1 Missense_Mutation p.T68I 0.20 benign(0.004) TCGA-EE-A2GO-06 3 186760695 186760695 C T ST6GAL1 Silent p.T68T 0.21 TCGA-EE-A2GO-06 3 187416267 187416267 C T RTP2 3'UTR 0.25 TCGA-EE-A2GO-06 3 191888446 191888446 C T FGF12 Splice_Site p.X139_splice 0.36 TCGA-EE-A2GO-06 3 192993015 192993015 C T ATP13A5 Missense_Mutation p.R1158K 0.22 tolerated(0.46) benign(0.015) TCGA-EE-A2GO-06 3 194062600 194062600 G A CPN2 Missense_Mutation p.R278W 0.44 tolerated(0.05) benign(0.064) TCGA-EE-A2GO-06 3 194063131 194063131 C T CPN2 Missense_Mutation p.D101N 0.25 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GO-06 3 195498540 195498540 C T MUC4 Missense_Mutation p.G4409R 0.43 possibly_damaging(0.53) TCGA-EE-A2GO-06 3 195517233 195517233 G C MUC4 Missense_Mutation p.N406K 0.43 unknown(0) TCGA-EE-A2GO-06 3 196199517 196199517 G A RNF168 Missense_Mutation p.P297S 0.20 tolerated(0.89) benign(0.051) TCGA-EE-A2GO-06 3 197585732 197585732 T C LRCH3 Missense_Mutation p.C558R 0.25 tolerated(0.06) benign(0.346) TCGA-EE-A2GO-06 3 23848885 23848885 C T UBE2E1 Missense_Mutation p.S42F 0.28 deleterious(0.04) benign(0.233) TCGA-EE-A2GO-06 3 27393973 27393973 G A NEK10 Nonsense_Mutation p.Q39* 0.23 TCGA-EE-A2GO-06 3 30032709 30032709 G A RBMS3 Intron 0.30 TCGA-EE-A2GO-06 3 32525428 32525428 G A CMTM6 3'UTR 0.37 TCGA-EE-A2GO-06 3 35833903 35833903 G A ARPP21 Missense_Mutation p.G689R 0.34 deleterious(0.01) benign(0.444) TCGA-EE-A2GO-06 3 35833904 35833904 G A ARPP21 Missense_Mutation p.G689E 0.34 deleterious(0.01) benign(0.138) TCGA-EE-A2GO-06 3 36897178 36897178 C T TRANK1 Silent p.L1301L 0.60 TCGA-EE-A2GO-06 3 37368554 37368554 C T GOLGA4 Missense_Mutation p.S1748F 0.29 possibly_damaging(0.459) TCGA-EE-A2GO-06 3 38149937 38149937 C T DLEC1 Silent p.S1020S 0.15 TCGA-EE-A2GO-06 3 38163998 38163998 G A DLEC1 3'UTR 0.33 TCGA-EE-A2GO-06 3 38592826 38592826 G A SCN5A Silent p.F1679F 0.58 TCGA-EE-A2GO-06 3 38768242 38768242 C T SCN10A Missense_Mutation p.R981K 0.29 tolerated(0.87) benign(0.002) TCGA-EE-A2GO-06 3 38770273 38770273 G A SCN10A Silent p.V800V 0.24 TCGA-EE-A2GO-06 3 38888670 38888670 C T SCN11A Missense_Mutation p.E1631K 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GO-06 3 38936350 38936350 C T SCN11A Missense_Mutation p.D837N 0.59 tolerated(0.32) possibly_damaging(0.762) TCGA-EE-A2GO-06 3 38936351 38936351 C T SCN11A Silent p.L836L 0.61 TCGA-EE-A2GO-06 3 39149295 39149295 C T GORASP1 5'UTR 0.35 TCGA-EE-A2GO-06 3 39185302 39185302 G A CSRNP1 Silent p.P338P 0.25 TCGA-EE-A2GO-06 3 39229088 39229088 G A XIRP1 Missense_Mutation p.P617S 0.20 tolerated(0.22) benign(0.017) TCGA-EE-A2GO-06 3 40547794 40547794 G A ZNF620 Splice_Site 0.50 TCGA-EE-A2GO-06 3 42705342 42705342 C T ZBTB47 Silent p.I597I 0.34 TCGA-EE-A2GO-06 3 42906672 42906672 G A ACKR2 Missense_Mutation p.M226I 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 3 42916943 42916943 C T CYP8B1 Missense_Mutation p.M122I 0.33 tolerated(1) benign(0.291) TCGA-EE-A2GO-06 3 44434414 44434414 G A TCAIM Missense_Mutation p.E214K 0.29 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 3 44951708 44951708 G A TGM4 Missense_Mutation p.G485E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 3 44955289 44955289 G A TGM4 3'UTR 0.71 TCGA-EE-A2GO-06 3 45153630 45153630 C T CDCP1 Nonsense_Mutation p.W200* 0.22 TCGA-EE-A2GO-06 3 45153631 45153631 C T CDCP1 Nonsense_Mutation p.W200* 0.23 TCGA-EE-A2GO-06 3 45823675 45823675 C T SLC6A20 Silent p.E54E 0.35 TCGA-EE-A2GO-06 3 46568951 46568951 G A LRRC2 Silent p.L298L 0.42 TCGA-EE-A2GO-06 3 46712537 46712537 G A ALS2CL Silent p.I933I 0.35 TCGA-EE-A2GO-06 3 48215915 48215915 G A CDC25A Silent p.S263S 0.21 TCGA-EE-A2GO-06 3 48615933 48615933 G A COL7A1 Missense_Mutation p.R1814C 0.33 unknown(0) TCGA-EE-A2GO-06 3 48615934 48615934 G A COL7A1 Silent p.L1813L 0.32 TCGA-EE-A2GO-06 3 48696441 48696441 G A CELSR3 Silent p.S1209S 0.20 TCGA-EE-A2GO-06 3 48725556 48725556 G A IP6K2 3'UTR 0.46 TCGA-EE-A2GO-06 3 49055845 49055845 G A DALRD3 Silent p.F51F 0.50 TCGA-EE-A2GO-06 3 49055847 49055847 A T DALRD3 Missense_Mutation p.F51I 0.50 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2GO-06 3 49154918 49154918 G A USP19 Silent p.H186H 0.60 TCGA-EE-A2GO-06 3 49169618 49169618 G A LAMB2 Silent p.I130I 0.23 TCGA-EE-A2GO-06 3 49662417 49662417 G A BSN Silent p.R78R 0.24 TCGA-EE-A2GO-06 3 49689716 49689716 C T BSN Silent p.L909L 0.30 TCGA-EE-A2GO-06 3 49694789 49694789 G A BSN Silent p.R2600R 0.23 TCGA-EE-A2GO-06 3 49714101 49714101 C T APEH Silent p.F268F 0.34 TCGA-EE-A2GO-06 3 49721435 49721435 C T MST1 3'UTR 0.58 TCGA-EE-A2GO-06 3 49755643 49755663 CAGCGGCGGCAGCGGCAGGCA - AMIGO3 In_Frame_Del p.A413_W419del 0.26 TCGA-EE-A2GO-06 3 49760828 49760828 C A GMPPB Missense_Mutation p.Q69H 0.26 deleterious(0.03) benign(0.007) TCGA-EE-A2GO-06 3 49947834 49947834 G A MON1A Missense_Mutation p.P463L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 3 50095359 50095359 G A RBM6 Missense_Mutation p.R631K 0.60 tolerated(0.18) benign(0.021) TCGA-EE-A2GO-06 3 50254686 50254686 G A SLC38A3 RNA 0.15 TCGA-EE-A2GO-06 3 50254687 50254687 G A SLC38A3 RNA 0.14 TCGA-EE-A2GO-06 3 50255380 50255380 C T SLC38A3 RNA 0.41 TCGA-EE-A2GO-06 3 50334541 50334541 G A NAT6 Silent p.P140P 0.68 TCGA-EE-A2GO-06 3 50416866 50416866 C T CACNA2D2 Silent p.Q383Q 0.19 TCGA-EE-A2GO-06 3 51982487 51982487 C T PARP3 Silent p.V538V 0.61 TCGA-EE-A2GO-06 3 52383328 52383328 C T DNAH1 Silent p.F806F 0.27 TCGA-EE-A2GO-06 3 52457306 52457306 C T PHF7 Silent p.I373I 0.45 TCGA-EE-A2GO-06 3 52485483 52485483 C T TNNC1 Silent p.E126E 0.29 TCGA-EE-A2GO-06 3 52547920 52547920 G A STAB1 Missense_Mutation p.D1124N 0.65 tolerated(0.12) benign(0.016) TCGA-EE-A2GO-06 3 52741807 52741807 G A SPCS1 Silent p.K163K 0.32 TCGA-EE-A2GO-06 3 52848316 52848316 G A ITIH4 Silent p.I845I 0.31 TCGA-EE-A2GO-06 3 53757629 53757629 C T CACNA1D Missense_Mutation p.P632L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 3 56789141 56789141 G A ARHGEF3 Silent p.I113I 0.29 TCGA-EE-A2GO-06 3 58095019 58095019 A G FLNB Silent p.G723G 0.17 TCGA-EE-A2GO-06 3 58131715 58131715 C T FLNB Silent p.L1862L 0.64 TCGA-EE-A2GO-06 3 62385167 62385167 C T CADPS Missense_Mutation p.E1326K 0.32 deleterious(0) benign(0.292) TCGA-EE-A2GO-06 3 64004323 64004323 G A PSMD6 Silent p.L260L 0.36 TCGA-EE-A2GO-06 3 65376950 65376950 G A MAGI1 Silent p.S761S 0.35 TCGA-EE-A2GO-06 3 70014286 70014286 C T MITF Missense_Mutation p.L484F 0.73 deleterious(0.03) possibly_damaging(0.781) TCGA-EE-A2GO-06 3 87325661 87325661 G A POU1F1 5'Flank 0.46 TCGA-EE-A2GO-06 3 89480399 89480399 G A EPHA3 Missense_Mutation p.D746N 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 3 8983456 8983456 G A RAD18 Missense_Mutation p.P100L 0.73 deleterious(0.01) benign(0.043) TCGA-EE-A2GO-06 3 97887585 97887585 C G OR5H15 Silent p.L14L 0.36 TCGA-EE-A2GO-06 3 9985701 9985701 C T CRELD1 Silent p.F388F 0.23 TCGA-EE-A2GO-06 4 100208064 100208064 G A ADH1A Missense_Mutation p.H68Y 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GO-06 4 100231990 100231990 C T ADH1B Silent p.A345A 0.56 TCGA-EE-A2GO-06 4 100268230 100268230 C T ADH1C Silent p.V64V 0.43 TCGA-EE-A2GO-06 4 100540131 100540131 G A MTTP Missense_Mutation p.E740K 0.54 tolerated(0.36) benign(0.007) TCGA-EE-A2GO-06 4 103533593 103533593 G A NFKB1 Missense_Mutation p.D808N 0.55 tolerated(0.14) benign(0.328) TCGA-EE-A2GO-06 4 103585980 103585980 G A MANBA Silent p.I449I 0.37 TCGA-EE-A2GO-06 4 103647759 103647759 G A MANBA Missense_Mutation p.P87S 0.42 tolerated(0.43) benign(0.204) TCGA-EE-A2GO-06 4 106601029 106601029 G A ARHGEF38 3'UTR 0.39 TCGA-EE-A2GO-06 4 11400739 11400739 G A HS3ST1 Silent p.F297F 0.41 TCGA-EE-A2GO-06 4 114823996 114823996 G A ARSJ Missense_Mutation p.R412C 0.42 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2GO-06 4 115754765 115754765 A G NDST4 Missense_Mutation p.L798P 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 4 118975704 118975704 T G NDST3 Silent p.G213G 0.27 TCGA-EE-A2GO-06 4 119652550 119652550 C T SEC24D Nonsense_Mutation p.W930* 0.38 TCGA-EE-A2GO-06 4 120528211 120528211 C T PDE5A Missense_Mutation p.E132K 0.34 tolerated(0.41) benign(0.114) TCGA-EE-A2GO-06 4 122853824 122853824 G A TRPC3 Missense_Mutation p.H197Y 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 4 123665233 123665236 AATA - BBS12 3'UTR 0.47 TCGA-EE-A2GO-06 4 126242647 126242647 C T FAT4 Missense_Mutation p.A1694V 0.48 benign(0.376) TCGA-EE-A2GO-06 4 129120747 129120747 C T LARP1B Silent p.C719C 0.50 TCGA-EE-A2GO-06 4 129120748 129120748 C T LARP1B Silent p.L720L 0.54 TCGA-EE-A2GO-06 4 134084268 134084268 G A PCDH10 Missense_Mutation p.M978I 0.57 tolerated(0.12) probably_damaging(0.943) TCGA-EE-A2GO-06 4 141074488 141074488 C T MAML3 5'UTR 0.57 TCGA-EE-A2GO-06 4 141331753 141331753 C T CLGN Missense_Mutation p.G58R 0.39 deleterious(0) possibly_damaging(0.512) TCGA-EE-A2GO-06 4 143129678 143129678 G A INPP4B Silent p.S324S 0.50 TCGA-EE-A2GO-06 4 149357209 149357209 C T NR3C2 Missense_Mutation p.M268I 0.35 deleterious_low_confidence(0) benign(0.107) TCGA-EE-A2GO-06 4 151835476 151835476 G A LRBA Silent p.F344F 0.44 TCGA-EE-A2GO-06 4 152024151 152024151 C T RPS3A Silent p.V161V 0.38 TCGA-EE-A2GO-06 4 154624702 154624702 G A TLR2 Missense_Mutation p.E215K 0.31 tolerated(0.78) benign(0.004) TCGA-EE-A2GO-06 4 155241609 155241609 C T DCHS2 Missense_Mutation p.E1193K 0.57 tolerated(0.07) probably_damaging(0.943) TCGA-EE-A2GO-06 4 155719262 155719262 G A RBM46 Missense_Mutation p.E151K 0.42 tolerated(0.68) possibly_damaging(0.699) TCGA-EE-A2GO-06 4 15850239 15850239 G A CD38 3'UTR 0.45 TCGA-EE-A2GO-06 4 15937659 15937659 C T FGFBP1 Silent p.E199E 0.45 TCGA-EE-A2GO-06 4 159750334 159750334 G A FNIP2 Missense_Mutation p.G113E 0.45 tolerated(1) benign(0.283) TCGA-EE-A2GO-06 4 164247358 164247358 G A NPY1R Missense_Mutation p.P117S 0.34 tolerated(0.95) benign(0.023) TCGA-EE-A2GO-06 4 1695320 1695320 G A SLBP 3'UTR 0.37 TCGA-EE-A2GO-06 4 170506614 170506614 G A NEK1 Silent p.L231L 0.39 TCGA-EE-A2GO-06 4 170613424 170613424 T C CLCN3 Missense_Mutation p.S297P 0.40 tolerated(0.08) probably_damaging(0.986) TCGA-EE-A2GO-06 4 173803978 173803978 C T GALNTL6 Missense_Mutation p.R321W 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 4 174216643 174216643 G A GALNT7 Missense_Mutation p.R284Q 0.52 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GO-06 4 175580344 175580344 G A GLRA3 Missense_Mutation p.S311L 0.53 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 4 185606818 185606818 C T PRIMPOL Silent p.A425A 0.54 TCGA-EE-A2GO-06 4 185724659 185724659 G A ACSL1 Missense_Mutation p.H4Y 0.53 deleterious_low_confidence(0.02) benign(0.006) TCGA-EE-A2GO-06 4 186111665 186111665 G A KIAA1430 Missense_Mutation p.S229L 0.56 tolerated(0.34) benign(0.027) TCGA-EE-A2GO-06 4 187539951 187539951 G A FAT1 Nonsense_Mutation p.R2597* 0.54 TCGA-EE-A2GO-06 4 187549424 187549424 G A FAT1 Missense_Mutation p.S1565F 0.47 benign(0.418) TCGA-EE-A2GO-06 4 22749400 22749400 A T GBA3 Missense_Mutation p.K256N 0.46 tolerated(0.48) benign(0.13) TCGA-EE-A2GO-06 4 25314427 25314427 G A ZCCHC4 5'UTR 0.33 TCGA-EE-A2GO-06 4 25314428 25314428 G A ZCCHC4 5'UTR 0.32 TCGA-EE-A2GO-06 4 26483440 26483440 G A CCKAR Silent p.I369I 0.54 TCGA-EE-A2GO-06 4 3174062 3174062 C T HTT Silent p.L1294L 0.41 TCGA-EE-A2GO-06 4 3235075 3235075 C T HTT Silent p.I2817I 0.44 TCGA-EE-A2GO-06 4 37962089 37962089 G A PTTG2 Missense_Mutation p.G12R 0.60 deleterious(0.03) benign(0.299) TCGA-EE-A2GO-06 4 38798109 38798109 C T TLR1 Missense_Mutation p.E782K 0.47 tolerated(0.23) benign(0.002) TCGA-EE-A2GO-06 4 420218 420218 G A ABCA11P RNA 0.55 TCGA-EE-A2GO-06 4 42580307 42580307 C T ATP8A1 Silent p.V366V 0.47 TCGA-EE-A2GO-06 4 42583635 42583635 C T ATP8A1 Intron 0.38 TCGA-EE-A2GO-06 4 43032468 43032468 C T GRXCR1 Nonsense_Mutation p.R262* 0.37 TCGA-EE-A2GO-06 4 44177058 44177058 G A KCTD8 Missense_Mutation p.R391C 0.55 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GO-06 4 46388188 46388188 G A GABRA2 Silent p.I30I 0.43 TCGA-EE-A2GO-06 4 47582432 47582432 C T ATP10D Silent p.T1195T 0.41 TCGA-EE-A2GO-06 4 47685847 47685847 C T CORIN Missense_Mutation p.E308K 0.57 tolerated(0.42) benign(0.013) TCGA-EE-A2GO-06 4 48136220 48136220 C T TXK 5'UTR 0.44 TCGA-EE-A2GO-06 4 48496373 48496373 G A ZAR1 3'UTR 0.39 TCGA-EE-A2GO-06 4 5418633 5418633 C T STK32B Silent p.S178S 0.62 TCGA-EE-A2GO-06 4 54347998 54347998 G A LNX1 Silent p.L458L 0.42 TCGA-EE-A2GO-06 4 55133825 55133825 G A PDGFRA Silent p.R346R 0.60 TCGA-EE-A2GO-06 4 57181806 57181806 C T KIAA1211 Missense_Mutation p.P713L 0.49 tolerated(0.72) possibly_damaging(0.859) TCGA-EE-A2GO-06 4 5975535 5975535 C T C4orf50 Missense_Mutation p.E561K 0.33 deleterious(0.01) possibly_damaging(0.469) TCGA-EE-A2GO-06 4 62363013 62363013 T A LPHN3 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-EE-A2GO-06 4 69798468 69798468 T A UGT2A3 Missense_Mutation p.N292Y 0.64 deleterious(0) benign(0.407) TCGA-EE-A2GO-06 4 70455329 70455329 C T UGT2A1 Missense_Mutation p.D615N 0.39 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A2GO-06 4 70460927 70460927 C T UGT2A1 Missense_Mutation p.G512E 0.55 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 4 71024217 71024217 G A C4orf40 Missense_Mutation p.G83E 0.44 tolerated(0.11) probably_damaging(0.988) TCGA-EE-A2GO-06 4 71347351 71347351 C T MUC7 Missense_Mutation p.S297F 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GO-06 4 71508070 71508070 G A ENAM Nonsense_Mutation p.W309* 0.43 TCGA-EE-A2GO-06 4 71508454 71508454 G A ENAM Silent p.K437K 0.60 TCGA-EE-A2GO-06 4 74270853 74270853 C T ALB Missense_Mutation p.R34W 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 4 74276105 74276105 G A ALB Missense_Mutation p.G231E 0.50 deleterious(0.04) probably_damaging(0.965) TCGA-EE-A2GO-06 4 74277825 74277825 G T ALB Nonsense_Mutation p.E276* 0.45 TCGA-EE-A2GO-06 4 74283322 74283322 G A ALB Missense_Mutation p.G455E 0.59 tolerated(0.13) probably_damaging(0.949) TCGA-EE-A2GO-06 4 74301934 74301934 C T AFP 5'UTR 0.45 TCGA-EE-A2GO-06 4 74477518 74477518 C T RASSF6 Missense_Mutation p.E31K 0.45 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GO-06 4 80328291 80328291 G A GK2 Missense_Mutation p.S355F 0.52 deleterious(0) probably_damaging(0.958) TCGA-EE-A2GO-06 4 80329014 80329014 C T GK2 Nonsense_Mutation p.W114* 0.35 TCGA-EE-A2GO-06 4 8207318 8207318 C T SH3TC1 Intron 0.29 TCGA-EE-A2GO-06 4 83581969 83581969 C T SCD5 Intron 0.45 TCGA-EE-A2GO-06 4 83602049 83602049 C T SCD5 Nonsense_Mutation p.W127* 0.48 TCGA-EE-A2GO-06 4 85664947 85664947 G A WDFY3 Silent p.S1993S 0.35 TCGA-EE-A2GO-06 4 88362986 88362986 C T NUDT9 Missense_Mutation p.P150L 0.48 deleterious(0.03) possibly_damaging(0.809) TCGA-EE-A2GO-06 4 96761295 96761295 G A PDHA2 5'UTR 0.39 TCGA-EE-A2GO-06 4 96761627 96761627 C T PDHA2 Missense_Mutation p.S109L 0.36 tolerated(0.26) benign(0.311) TCGA-EE-A2GO-06 5 110835772 110835772 C T STARD4 Missense_Mutation p.E144K 0.30 tolerated(0.43) benign(0.083) TCGA-EE-A2GO-06 5 1201909 1201909 C T SLC6A19 Silent p.F48F 0.25 TCGA-EE-A2GO-06 5 121758593 121758593 C T SNCAIP Missense_Mutation p.S54L 0.19 deleterious(0) benign(0.146) TCGA-EE-A2GO-06 5 1244405 1244405 C T SLC6A18 Silent p.F471F 0.35 TCGA-EE-A2GO-06 5 127471439 127471439 C T SLC12A2 Silent p.F449F 0.20 TCGA-EE-A2GO-06 5 128324406 128324406 C T SLC27A6 Missense_Mutation p.H267Y 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 5 132412462 132412462 C T HSPA4 Silent p.I260I 0.60 TCGA-EE-A2GO-06 5 134296396 134296396 C T PCBD2 Intron 0.31 TCGA-EE-A2GO-06 5 135282927 135282927 C T LECT2 3'UTR 0.44 TCGA-EE-A2GO-06 5 137488410 137488410 G A BRD8 Missense_Mutation p.H873Y 0.25 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GO-06 5 137722017 137722017 A C KDM3B Missense_Mutation p.N363H 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 5 13824359 13824359 C T DNAH5 Silent p.T2176T 0.52 TCGA-EE-A2GO-06 5 138860759 138860759 G A TMEM173 Silent p.I132I 0.27 TCGA-EE-A2GO-06 5 13911581 13911581 T C DNAH5 Missense_Mutation p.K520E 0.60 possibly_damaging(0.621) TCGA-EE-A2GO-06 5 139193050 139193050 C T PSD2 Silent p.F176F 0.32 TCGA-EE-A2GO-06 5 139943866 139943866 G A APBB3 5'Flank 0.75 TCGA-EE-A2GO-06 5 139947427 139947427 T C SLC35A4 Missense_Mutation p.Y225H 0.24 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GO-06 5 140165977 140165977 G A PCDHA1 Silent p.S34S 0.30 TCGA-EE-A2GO-06 5 140182999 140182999 G A PCDHA3 Silent p.L739L 0.63 TCGA-EE-A2GO-06 5 140183150 140183150 G A PCDHA3 Missense_Mutation p.D790N 0.31 tolerated_low_confidence(0.25) benign(0.002) TCGA-EE-A2GO-06 5 140210066 140210066 C T PCDHA6 Missense_Mutation p.A797V 0.34 tolerated_low_confidence(0.15) benign(0.001) TCGA-EE-A2GO-06 5 140222482 140222482 G A PCDHA8 Missense_Mutation p.E526K 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GO-06 5 140228971 140228971 C T PCDHA9 Silent p.P297P 0.24 TCGA-EE-A2GO-06 5 140250530 140250530 G A PCDHA11 Silent p.A614A 0.37 TCGA-EE-A2GO-06 5 140255718 140255718 G A PCDHA12 Missense_Mutation p.E221K 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.536) TCGA-EE-A2GO-06 5 140348014 140348014 G A PCDHAC2 Missense_Mutation p.G555R 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 5 140389333 140389333 C T PCDHAC1 Silent p.F901F 0.32 TCGA-EE-A2GO-06 5 140432834 140432834 G A PCDHB1 Silent p.V593V 0.36 TCGA-EE-A2GO-06 5 140482015 140482015 C T PCDHB3 Silent p.G594G 0.10 TCGA-EE-A2GO-06 5 140503404 140503404 C T PCDHB4 Silent p.A608A 0.22 TCGA-EE-A2GO-06 5 140531413 140531413 C T PCDHB6 Silent p.F525F 0.29 TCGA-EE-A2GO-06 5 140531420 140531420 C T PCDHB6 Missense_Mutation p.R528C 0.39 deleterious(0.01) benign(0.201) TCGA-EE-A2GO-06 5 140537320 140537320 C T PCDHB17 Missense_Mutation p.P582S 0.56 tolerated_low_confidence(0.2) benign(0) TCGA-EE-A2GO-06 5 140537321 140537321 C T PCDHB17 Missense_Mutation p.P582L 0.57 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A2GO-06 5 140537728 140537728 G C PCDHB17 3'UTR 0.23 TCGA-EE-A2GO-06 5 140553283 140553283 C T PCDHB7 Silent p.L289L 0.59 TCGA-EE-A2GO-06 5 140558145 140558145 C T PCDHB8 Missense_Mutation p.S177F 0.22 tolerated_low_confidence(0.15) benign(0.018) TCGA-EE-A2GO-06 5 140558522 140558522 C T PCDHB8 Nonsense_Mutation p.R303* 0.59 TCGA-EE-A2GO-06 5 140559171 140559171 C T PCDHB8 Missense_Mutation p.S519L 0.29 deleterious_low_confidence(0) benign(0.276) TCGA-EE-A2GO-06 5 140563302 140563302 C T PCDHB16 Missense_Mutation p.P390S 0.63 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GO-06 5 140564516 140564516 A C PCDHB16 3'UTR 0.26 TCGA-EE-A2GO-06 5 140580627 140580627 G A PCDHB11 Missense_Mutation p.G427E 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GO-06 5 140603429 140603429 C T PCDHB14 Missense_Mutation p.R118W 0.31 deleterious_low_confidence(0.01) benign(0.007) TCGA-EE-A2GO-06 5 140604067 140604067 A T PCDHB14 Missense_Mutation p.K330N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-EE-A2GO-06 5 140627296 140627296 G A PCDHB15 Missense_Mutation p.S717N 0.24 tolerated_low_confidence(0.4) benign(0.007) TCGA-EE-A2GO-06 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-EE-A2GO-06 5 140769051 140769051 G A PCDHGB4 Missense_Mutation p.D534N 0.26 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A2GO-06 5 140773387 140773387 C T PCDHGA8 Missense_Mutation p.S336L 0.31 deleterious_low_confidence(0.01) benign(0.018) TCGA-EE-A2GO-06 5 140799445 140799445 G A PCDHGB7 Silent p.P673P 0.41 TCGA-EE-A2GO-06 5 140810526 140810526 T C PCDHGA12 Missense_Mutation p.I67T 0.50 deleterious_low_confidence(0) benign(0.297) TCGA-EE-A2GO-06 5 140810530 140810530 C A PCDHGA12 Silent p.P68P 0.53 TCGA-EE-A2GO-06 5 140966731 140966731 C T DIAPH1 Missense_Mutation p.E60K 0.27 unknown(0) TCGA-EE-A2GO-06 5 141019574 141019574 G A RELL2 Silent p.G197G 0.35 TCGA-EE-A2GO-06 5 1422075 1422075 C G SLC6A3 Silent p.P236P 0.21 TCGA-EE-A2GO-06 5 14280515 14280515 G A TRIO Missense_Mutation p.R106K 0.18 probably_damaging(0.963) TCGA-EE-A2GO-06 5 1443059 1443059 C T SLC6A3 Missense_Mutation p.R85Q 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 5 145477815 145477815 G A PLAC8L1 Missense_Mutation p.R54W 0.47 tolerated(0.19) benign(0.015) TCGA-EE-A2GO-06 5 145616976 145616976 C T RBM27 Silent p.L420L 0.31 TCGA-EE-A2GO-06 5 145643195 145643195 G A RBM27 Splice_Site p.X777_splice 0.59 TCGA-EE-A2GO-06 5 14602344 14602344 G A FAM105A Missense_Mutation p.R134K 0.25 tolerated(0.36) benign(0.001) TCGA-EE-A2GO-06 5 146778664 146778664 G A DPYSL3 Missense_Mutation p.S535F 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A2GO-06 5 147486632 147486632 G A SPINK5 Silent p.R504R 0.36 TCGA-EE-A2GO-06 5 147665706 147665706 C T SPINK13 3'UTR 0.32 TCGA-EE-A2GO-06 5 148406505 148406505 C T SH3TC2 Silent p.L930L 0.61 TCGA-EE-A2GO-06 5 148427496 148427496 G A SH3TC2 Silent p.L70L 0.66 TCGA-EE-A2GO-06 5 149509532 149509532 C T PDGFRB Splice_Site p.X456_splice 0.32 TCGA-EE-A2GO-06 5 150311104 150311104 G A ZNF300P1 RNA 0.43 TCGA-EE-A2GO-06 5 150696594 150696594 G A SLC36A2 Silent p.S412S 0.53 TCGA-EE-A2GO-06 5 150948504 150948504 C T FAT2 5'UTR 0.48 TCGA-EE-A2GO-06 5 151771997 151771997 G A NMUR2 Nonsense_Mutation p.Q335* 0.60 TCGA-EE-A2GO-06 5 151771998 151771998 G A NMUR2 Silent p.F334F 0.60 TCGA-EE-A2GO-06 5 157065459 157065459 G A SOX30 Silent p.A553A 0.21 TCGA-EE-A2GO-06 5 157065460 157065460 G A SOX30 Missense_Mutation p.A553V 0.21 tolerated(0.09) benign(0.014) TCGA-EE-A2GO-06 5 157181871 157181871 C T LSM11 Missense_Mutation p.R228W 0.63 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 5 158601054 158601054 G A RNF145 Missense_Mutation p.S275F 0.27 tolerated(0.07) possibly_damaging(0.866) TCGA-EE-A2GO-06 5 15936637 15936637 C T FBXL7 Missense_Mutation p.S273F 0.27 tolerated(0.7) benign(0.387) TCGA-EE-A2GO-06 5 159686764 159686764 G A CCNJL Missense_Mutation p.R147W 0.39 deleterious(0) possibly_damaging(0.884) TCGA-EE-A2GO-06 5 159821391 159821391 C T C5orf54 Silent p.E369E 0.30 TCGA-EE-A2GO-06 5 159834579 159834579 T A SLU7 Silent p.L343L 0.24 TCGA-EE-A2GO-06 5 160115067 160115067 C T ATP10B Silent p.V5V 0.39 TCGA-EE-A2GO-06 5 161116746 161116746 G A GABRA6 Missense_Mutation p.G212R 0.56 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GO-06 5 16670646 16670646 A T MYO10 Missense_Mutation p.F1958I 0.61 deleterious(0) benign(0.05) TCGA-EE-A2GO-06 5 167675294 167675294 G A TENM2 Silent p.K2450K 0.31 TCGA-EE-A2GO-06 5 167849095 167849095 C T WWC1 Silent p.L423L 0.63 TCGA-EE-A2GO-06 5 168233482 168233482 G A SLIT3 Missense_Mutation p.P302S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 5 168233571 168233571 G A SLIT3 Missense_Mutation p.S272F 0.56 deleterious(0.03) benign(0.429) TCGA-EE-A2GO-06 5 169028327 169028327 C T SPDL1 Silent p.L456L 0.58 TCGA-EE-A2GO-06 5 172517806 172517806 T C CREBRF Silent p.T208T 0.34 TCGA-EE-A2GO-06 5 172537614 172537614 C T CREBRF Missense_Mutation p.R503W 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 5 176001113 176001113 C T CDHR2 Silent p.S145S 0.40 TCGA-EE-A2GO-06 5 176733210 176733210 G A MXD3 3'Flank 0.30 TCGA-EE-A2GO-06 5 176824023 176824023 C T SLC34A1 Missense_Mutation p.A455V 0.64 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 5 176915135 176915135 G A PDLIM7 Silent p.F328F 0.31 TCGA-EE-A2GO-06 5 177059093 177059093 G A RP11-1277A3.2 Intron 0.64 TCGA-EE-A2GO-06 5 177547690 177547690 C T N4BP3 Missense_Mutation p.P281L 0.31 deleterious(0) benign(0.074) TCGA-EE-A2GO-06 5 179143198 179143198 C T CANX Missense_Mutation p.P272S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 5 180043920 180043920 C T FLT4 Missense_Mutation p.E1026K 0.23 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GO-06 5 180219449 180219449 C T MGAT1 Missense_Mutation p.D175N 0.29 benign(0.002) TCGA-EE-A2GO-06 5 180219450 180219450 C T MGAT1 Silent p.P174P 0.29 TCGA-EE-A2GO-06 5 180668594 180668594 C T GNB2L1 Silent p.L109L 0.26 TCGA-EE-A2GO-06 5 19591224 19591224 C T CDH18 Missense_Mutation p.G314E 0.38 tolerated(0.53) possibly_damaging(0.52) TCGA-EE-A2GO-06 5 19591301 19591301 C T CDH18 Silent p.G288G 0.33 TCGA-EE-A2GO-06 5 23522914 23522914 C T PRDM9 Missense_Mutation p.P268S 0.59 deleterious(0) possibly_damaging(0.584) TCGA-EE-A2GO-06 5 32087295 32087295 T A PDZD2 Silent p.P1247P 0.33 TCGA-EE-A2GO-06 5 32087696 32087696 G A PDZD2 Missense_Mutation p.G1381E 0.62 tolerated(0.12) benign(0.03) TCGA-EE-A2GO-06 5 33455743 33455743 C T TARS Silent p.I242I 0.51 TCGA-EE-A2GO-06 5 35709050 35709050 T C SPEF2 Missense_Mutation p.V889A 0.53 tolerated(0.41) benign(0.004) TCGA-EE-A2GO-06 5 35957389 35957389 C A UGT3A1 Nonsense_Mutation p.G326* 0.32 TCGA-EE-A2GO-06 5 36257148 36257148 G T RANBP3L Silent p.S291S 0.16 TCGA-EE-A2GO-06 5 36677050 36677050 G A SLC1A3 Silent p.T208T 0.39 TCGA-EE-A2GO-06 5 38412654 38412654 C T EGFLAM Silent p.I466I 0.74 TCGA-EE-A2GO-06 5 39202066 39202066 C T FYB Missense_Mutation p.E343K 0.22 deleterious(0.04) possibly_damaging(0.713) TCGA-EE-A2GO-06 5 40762766 40762766 C T PRKAA1 3'Flank 0.33 TCGA-EE-A2GO-06 5 40964898 40964898 G A C7 Missense_Mutation p.G602E 0.42 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 5 42801040 42801040 C T SEPP1 Missense_Mutation p.E310K 0.31 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-EE-A2GO-06 5 43547949 43547949 G A PAIP1 Missense_Mutation p.H168Y 0.32 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GO-06 5 45262127 45262127 G A HCN1 Missense_Mutation p.P857S 0.28 tolerated_low_confidence(0.37) benign(0.002) TCGA-EE-A2GO-06 5 464438 464438 C T EXOC3 Silent p.L563L 0.30 TCGA-EE-A2GO-06 5 54557221 54557221 G A DHX29 Missense_Mutation p.S1312F 0.37 deleterious(0) benign(0.284) TCGA-EE-A2GO-06 5 5463286 5463286 A C KIAA0947 Missense_Mutation p.K1280T 0.36 tolerated(0.27) benign(0.098) TCGA-EE-A2GO-06 5 56777745 56777745 G A ACTBL2 Nonsense_Mutation p.Q264* 0.36 TCGA-EE-A2GO-06 5 56778234 56778234 C T ACTBL2 Missense_Mutation p.E101K 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-EE-A2GO-06 5 66459314 66459314 C T MAST4 Missense_Mutation p.P1436L 0.31 probably_damaging(0.999) TCGA-EE-A2GO-06 5 66478766 66478766 G A CD180 Silent p.L635L 0.28 TCGA-EE-A2GO-06 5 6752992 6752992 T C PAPD7 Missense_Mutation p.F426L 0.31 tolerated_low_confidence(0.49) benign(0.045) TCGA-EE-A2GO-06 5 68665386 68665386 G A TAF9 Intron 0.18 TCGA-EE-A2GO-06 5 70942103 70942103 T A MCCC2 Silent p.T405T 0.67 TCGA-EE-A2GO-06 5 73168939 73168939 C T ARHGEF28 Silent p.F894F 0.54 TCGA-EE-A2GO-06 5 73931100 73931100 G A ENC1 Missense_Mutation p.P404L 0.25 deleterious_low_confidence(0) benign(0.279) TCGA-EE-A2GO-06 5 75914384 75914384 C T F2RL2 Missense_Mutation p.E50K 0.33 tolerated(0.79) benign(0.011) TCGA-EE-A2GO-06 5 76129186 76129186 C T F2RL1 Silent p.L252L 0.32 TCGA-EE-A2GO-06 5 79027241 79027241 G A CMYA5 Missense_Mutation p.E885K 0.40 probably_damaging(0.959) TCGA-EE-A2GO-06 5 79034206 79034206 G A CMYA5 Silent p.K3206K 0.50 TCGA-EE-A2GO-06 5 840578 840578 G A ZDHHC11 Intron 0.32 TCGA-EE-A2GO-06 5 865567 865567 G A BRD9 Missense_Mutation p.S552F 0.34 deleterious(0) possibly_damaging(0.729) TCGA-EE-A2GO-06 5 89969925 89969925 C T GPR98 Missense_Mutation p.R1662C 0.23 probably_damaging(0.993) TCGA-EE-A2GO-06 5 90041410 90041410 C T GPR98 Missense_Mutation p.S3591L 0.48 probably_damaging(0.966) TCGA-EE-A2GO-06 5 93076968 93076968 G A POU5F2 Missense_Mutation p.P101L 0.65 tolerated(0.24) benign(0) TCGA-EE-A2GO-06 5 95735809 95735809 C T PCSK1 Nonsense_Mutation p.W426* 0.24 TCGA-EE-A2GO-06 6 106553274 106553274 C T PRDM1 Silent p.F413F 0.91 TCGA-EE-A2GO-06 6 107391813 107391813 G A BEND3 Silent p.F194F 0.95 TCGA-EE-A2GO-06 6 107954763 107954763 G A SOBP Missense_Mutation p.D239N 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GO-06 6 117710870 117710870 T G ROS1 Missense_Mutation p.I468L 0.85 tolerated(0.35) possibly_damaging(0.729) TCGA-EE-A2GO-06 6 12123732 12123732 C T HIVEP1 Missense_Mutation p.P1235L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 6 121436358 121436358 G A TBC1D32 Missense_Mutation p.L1005F 0.41 deleterious(0) benign(0.248) TCGA-EE-A2GO-06 6 121769042 121769042 G A GJA1 Missense_Mutation p.G350E 0.52 tolerated(0.9) possibly_damaging(0.699) TCGA-EE-A2GO-06 6 127796793 127796793 G A SOGA3 Missense_Mutation p.T793M 0.11 deleterious(0.02) probably_damaging(0.925) TCGA-EE-A2GO-06 6 127898428 127898428 G A C6orf58 Nonsense_Mutation p.W33* 0.42 TCGA-EE-A2GO-06 6 128134836 128134836 C T THEMIS Missense_Mutation p.R317K 0.52 deleterious(0.04) benign(0.163) TCGA-EE-A2GO-06 6 129674449 129674449 G A LAMA2 Missense_Mutation p.R1555K 0.39 tolerated(0.29) benign(0.005) TCGA-EE-A2GO-06 6 131220710 131220710 G A EPB41L2 Missense_Mutation p.S386L 1.00 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 6 133035073 133035073 C T VNN1 Silent p.A34A 0.92 TCGA-EE-A2GO-06 6 133072435 133072435 T A VNN2 Missense_Mutation p.E350V 0.35 deleterious(0.01) possibly_damaging(0.548) TCGA-EE-A2GO-06 6 150289957 150289957 C T ULBP1 Silent p.F100F 0.50 TCGA-EE-A2GO-06 6 150289958 150289958 C T ULBP1 Missense_Mutation p.L101F 0.50 tolerated(0.07) possibly_damaging(0.601) TCGA-EE-A2GO-06 6 150385785 150385785 C G ULBP3 Missense_Mutation p.W231C 0.91 tolerated(0.08) benign(0.055) TCGA-EE-A2GO-06 6 150385786 150385786 C T ULBP3 Nonsense_Mutation p.W231* 0.92 TCGA-EE-A2GO-06 6 151687577 151687577 G A ZBTB2 Silent p.S208S 0.50 TCGA-EE-A2GO-06 6 152472804 152472804 C T SYNE1 Missense_Mutation p.E8112K 0.95 probably_damaging(0.984) TCGA-EE-A2GO-06 6 152771870 152771870 C T SYNE1 Silent p.R1095R 0.93 TCGA-EE-A2GO-06 6 152771871 152771871 C T SYNE1 Missense_Mutation p.R1095K 0.93 benign(0.007) TCGA-EE-A2GO-06 6 153019221 153019221 G A MYCT1 Missense_Mutation p.E62K 0.38 tolerated(0.09) possibly_damaging(0.465) TCGA-EE-A2GO-06 6 154587080 154587080 A C IPCEF1 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0) TCGA-EE-A2GO-06 6 15496948 15496948 C T JARID2 Missense_Mutation p.R498W 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GO-06 6 159463142 159463142 C T TAGAP Missense_Mutation p.G95S 0.38 tolerated(0.25) benign(0.048) TCGA-EE-A2GO-06 6 159655317 159655317 C T FNDC1 Missense_Mutation p.P1258L 0.50 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2GO-06 6 161653068 161653068 G A AGPAT4 Nonsense_Mutation p.Q60* 0.45 TCGA-EE-A2GO-06 6 167352427 167352427 G A RNASET2 Silent p.Y134Y 0.80 TCGA-EE-A2GO-06 6 24448399 24448399 C T GPLD1 Missense_Mutation p.G495E 0.30 tolerated(0.87) benign(0.031) TCGA-EE-A2GO-06 6 24564560 24564560 G A KIAA0319 Silent p.I767I 0.33 TCGA-EE-A2GO-06 6 24581199 24581199 C T KIAA0319 Missense_Mutation p.E412K 0.25 tolerated(0.1) possibly_damaging(0.873) TCGA-EE-A2GO-06 6 25819947 25819947 C T SLC17A1 Nonsense_Mutation p.W135* 0.41 TCGA-EE-A2GO-06 6 25830806 25830806 C T SLC17A1 5'UTR 0.58 TCGA-EE-A2GO-06 6 28501961 28501961 G A GPX5 3'UTR 0.63 TCGA-EE-A2GO-06 6 29012249 29012249 C T OR2W1 Missense_Mutation p.R235Q 0.33 tolerated(0.34) benign(0.011) TCGA-EE-A2GO-06 6 29555695 29555695 C T OR2H2 5'UTR 0.61 TCGA-EE-A2GO-06 6 29555696 29555696 C T OR2H2 5'UTR 0.61 TCGA-EE-A2GO-06 6 30656395 30656395 C T NRM 3'UTR 0.31 TCGA-EE-A2GO-06 6 30673682 30673682 G A MDC1 Missense_Mutation p.P1093L 0.28 tolerated(0.06) benign(0.062) TCGA-EE-A2GO-06 6 30680309 30680309 G A MDC1 Silent p.V470V 0.63 TCGA-EE-A2GO-06 6 30711704 30711704 G A IER3 3'UTR 0.31 TCGA-EE-A2GO-06 6 30857132 30857132 C T DDR1 Silent p.F114F 0.67 TCGA-EE-A2GO-06 6 31594838 31594838 C A PRRC2A Missense_Mutation p.P385T 0.50 unknown(0) TCGA-EE-A2GO-06 6 31605326 31605326 G A PRRC2A Missense_Mutation p.R2146Q 0.33 unknown(0) TCGA-EE-A2GO-06 6 31636404 31636404 C T CSNK2B-LY6G5B-1181 Silent p.I88I 0.37 TCGA-EE-A2GO-06 6 31639822 31639822 C T CSNK2B-LY6G5B-1181 3'UTR 0.25 TCGA-EE-A2GO-06 6 31732083 31732083 C T SAPCD1 Missense_Mutation p.T131I 0.32 tolerated(0.06) benign(0.24) TCGA-EE-A2GO-06 6 31747479 31747479 G A VARS Missense_Mutation p.P1065L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 6 31762910 31762910 C T VARS Missense_Mutation p.E29K 0.34 tolerated_low_confidence(0.29) benign(0.025) TCGA-EE-A2GO-06 6 31919014 31919014 G A CFB Missense_Mutation p.G1152E 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GO-06 6 32093908 32093908 G A ATF6B Missense_Mutation p.S155F 0.27 deleterious(0.01) possibly_damaging(0.498) TCGA-EE-A2GO-06 6 32149359 32149359 C T AGER Intron 0.26 TCGA-EE-A2GO-06 6 32411153 32411153 C T HLA-DRA Missense_Mutation p.H174Y 0.40 tolerated(0.34) benign(0.01) TCGA-EE-A2GO-06 6 32784762 32784762 C T HLA-DOB 5'UTR 0.72 TCGA-EE-A2GO-06 6 33247049 33247049 T C WDR46 3'UTR 0.25 TCGA-EE-A2GO-06 6 33656527 33656527 C T ITPR3 Silent p.F2221F 0.24 TCGA-EE-A2GO-06 6 35088242 35088242 G A TCP11 Silent p.L312L 0.38 TCGA-EE-A2GO-06 6 35289056 35289056 G A DEF6 Missense_Mutation p.G589R 0.30 tolerated(0.26) benign(0.024) TCGA-EE-A2GO-06 6 36716035 36716035 G A CPNE5 Silent p.I327I 0.37 TCGA-EE-A2GO-06 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.40 TCGA-EE-A2GO-06 6 37140803 37140803 C T PIM1 Silent p.I213I 0.23 TCGA-EE-A2GO-06 6 38560550 38560550 A G BTBD9 Silent p.L206L 0.28 TCGA-EE-A2GO-06 6 38843436 38843436 C T DNAH8 Missense_Mutation p.H2347Y 0.25 benign(0.148) TCGA-EE-A2GO-06 6 38917293 38917293 C T DNAH8 Silent p.I3848I 0.33 TCGA-EE-A2GO-06 6 38939400 38939400 G A DNAH8 Missense_Mutation p.E3945K 0.25 probably_damaging(1) TCGA-EE-A2GO-06 6 40359725 40359725 C T LRFN2 Missense_Mutation p.G776E 0.43 tolerated(0.92) benign(0.012) TCGA-EE-A2GO-06 6 40399740 40399740 C T LRFN2 Missense_Mutation p.M371I 0.29 tolerated(0.22) benign(0.001) TCGA-EE-A2GO-06 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.47 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A2GO-06 6 41617375 41617375 C T MDFI Missense_Mutation p.P93L 0.59 deleterious(0) possibly_damaging(0.726) TCGA-EE-A2GO-06 6 42853737 42853737 G A RPL7L1 Missense_Mutation p.E150K 0.20 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A2GO-06 6 43109934 43109934 C T PTK7 Silent p.S656S 0.66 TCGA-EE-A2GO-06 6 43168531 43168531 C T CUL9 Silent p.S1202S 0.32 TCGA-EE-A2GO-06 6 43325003 43325003 G A ZNF318 Missense_Mutation p.S350F 0.24 possibly_damaging(0.709) TCGA-EE-A2GO-06 6 44144346 44144346 G A CAPN11 Missense_Mutation p.D344N 0.64 tolerated(0.23) benign(0.072) TCGA-EE-A2GO-06 6 44144731 44144731 C T CAPN11 Silent p.H411H 0.34 TCGA-EE-A2GO-06 6 44253779 44253779 G A TCTE1 Silent p.F256F 0.65 TCGA-EE-A2GO-06 6 44392179 44392179 C T CDC5L Silent p.L476L 0.54 TCGA-EE-A2GO-06 6 46849828 46849828 C T GPR116 Missense_Mutation p.G210E 0.32 tolerated(0.09) benign(0.008) TCGA-EE-A2GO-06 6 50740413 50740413 C T TFAP2D Nonsense_Mutation p.Q399* 0.45 TCGA-EE-A2GO-06 6 52343840 52343840 C T EFHC1 Silent p.S428S 0.42 TCGA-EE-A2GO-06 6 5368915 5368915 G A FARS2 Missense_Mutation p.A38T 0.29 tolerated(0.54) benign(0.002) TCGA-EE-A2GO-06 6 54208096 54208096 G A TINAG Missense_Mutation p.G233S 0.38 tolerated(0.1) benign(0.027) TCGA-EE-A2GO-06 6 55304353 55304353 C T HMGCLL1 Missense_Mutation p.G297E 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 6 55739218 55739218 T C BMP5 Missense_Mutation p.N149S 0.40 tolerated(0.68) benign(0.005) TCGA-EE-A2GO-06 6 55739256 55739256 G A BMP5 Silent p.T136T 0.73 TCGA-EE-A2GO-06 6 56420376 56420376 T C DST Missense_Mutation p.N2345S 0.20 benign(0.002) TCGA-EE-A2GO-06 6 6625158 6625158 G A LY86 Splice_Site p.X46_splice 0.33 TCGA-EE-A2GO-06 6 6626578 6626578 A G LY86 Silent p.S92S 0.38 TCGA-EE-A2GO-06 6 69703688 69703688 G A BAI3 Missense_Mutation p.R588Q 0.90 deleterious(0) possibly_damaging(0.752) TCGA-EE-A2GO-06 6 73787531 73787531 C T KCNQ5 Missense_Mutation p.S280L 0.89 deleterious(0) possibly_damaging(0.59) TCGA-EE-A2GO-06 6 73904963 73904963 G A KCNQ5 Silent p.E894E 0.49 TCGA-EE-A2GO-06 6 80406229 80406229 G A SH3BGRL2 Missense_Mutation p.E87K 0.32 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GO-06 6 84772627 84772627 G A MRAP2 Missense_Mutation p.G48E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 6 84798837 84798837 C T MRAP2 Silent p.F85F 0.97 TCGA-EE-A2GO-06 6 87970415 87970415 T C ZNF292 Silent p.P2356P 0.30 TCGA-EE-A2GO-06 6 88144696 88144696 G C C6ORF165 Missense_Mutation p.K473N 0.91 tolerated(0.11) benign(0.392) TCGA-EE-A2GO-06 6 88173915 88173915 G A C6ORF165 Missense_Mutation p.E606K 0.31 tolerated(1) benign(0) TCGA-EE-A2GO-06 6 90432827 90432827 C T MDN1 Silent p.G1938G 0.91 TCGA-EE-A2GO-06 6 97246840 97246840 C T GPR63 Silent p.L256L 0.91 TCGA-EE-A2GO-06 7 100074934 100074934 C T TSC22D4 Missense_Mutation p.R243Q 0.21 tolerated_low_confidence(0.13) benign(0.219) TCGA-EE-A2GO-06 7 100086570 100086570 C T NYAP1 Missense_Mutation p.P409L 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 7 100348418 100348418 G A ZAN Missense_Mutation p.G474R 0.45 probably_damaging(0.998) TCGA-EE-A2GO-06 7 100349606 100349606 C T ZAN Silent p.P626P 0.48 TCGA-EE-A2GO-06 7 100549633 100549633 G A MUC3A Missense_Mutation p.E72K 0.19 tolerated(0.12) unknown(0) TCGA-EE-A2GO-06 7 100682653 100682653 C T MUC17 Silent p.T2652T 0.50 TCGA-EE-A2GO-06 7 103214626 103214626 C T RELN Missense_Mutation p.G1475E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 104377186 104377186 G A LHFPL3 Silent p.R170R 0.20 TCGA-EE-A2GO-06 7 107329599 107329599 G A SLC26A4 Missense_Mutation p.G368E 0.19 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GO-06 7 107545812 107545812 C T DLD Missense_Mutation p.H149Y 0.12 tolerated(1) benign(0.003) TCGA-EE-A2GO-06 7 107600045 107600045 G A LAMB1 Intron 0.19 TCGA-EE-A2GO-06 7 107704318 107704318 G A LAMB4 Silent p.S983S 0.21 TCGA-EE-A2GO-06 7 107717485 107717485 G A LAMB4 Silent p.I676I 0.28 TCGA-EE-A2GO-06 7 111430624 111430624 G A DOCK4 Silent p.G1068G 0.27 TCGA-EE-A2GO-06 7 111448896 111448896 G A DOCK4 Silent p.F1049F 0.53 TCGA-EE-A2GO-06 7 113517821 113517821 G A PPP1R3A Missense_Mutation p.S1109F 0.19 tolerated(0.61) benign(0.01) TCGA-EE-A2GO-06 7 113518217 113518217 G A PPP1R3A Missense_Mutation p.S977F 0.19 tolerated(0.73) benign(0.004) TCGA-EE-A2GO-06 7 115580841 115580841 C T TFEC Missense_Mutation p.G270R 0.36 tolerated(0.35) benign(0.042) TCGA-EE-A2GO-06 7 119915195 119915195 G A KCND2 Missense_Mutation p.R170K 0.17 tolerated(0.74) benign(0.002) TCGA-EE-A2GO-06 7 120428654 120428654 C T TSPAN12 Missense_Mutation p.E304K 0.23 tolerated_low_confidence(0.07) benign(0.027) TCGA-EE-A2GO-06 7 120428878 120428878 G A TSPAN12 Missense_Mutation p.S229F 0.32 deleterious(0.02) possibly_damaging(0.776) TCGA-EE-A2GO-06 7 121651510 121651510 G A PTPRZ1 Missense_Mutation p.D804N 0.52 deleterious_low_confidence(0.02) benign(0.157) TCGA-EE-A2GO-06 7 122342004 122342004 G A RNF148 Silent p.P267P 0.25 TCGA-EE-A2GO-06 7 123109291 123109291 A C IQUB Missense_Mutation p.L520V 0.45 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GO-06 7 123302465 123302465 C T LMOD2 Silent p.V275V 0.48 TCGA-EE-A2GO-06 7 123334870 123334870 G A WASL Missense_Mutation p.S242L 0.17 deleterious(0) possibly_damaging(0.472) TCGA-EE-A2GO-06 7 126173078 126173078 G A GRM8 Silent p.T786T 0.20 TCGA-EE-A2GO-06 7 127235366 127235366 G A FSCN3 Nonsense_Mutation p.W50* 0.25 TCGA-EE-A2GO-06 7 127669172 127669172 C T LRRC4 Missense_Mutation p.A508T 0.56 tolerated(0.85) benign(0) TCGA-EE-A2GO-06 7 129658533 129658533 G A ZC3HC1 Missense_Mutation p.R494W 0.50 deleterious(0.02) possibly_damaging(0.557) TCGA-EE-A2GO-06 7 129691230 129691230 C T ZC3HC1 5'UTR 0.21 TCGA-EE-A2GO-06 7 134644731 134644731 A G CALD1 Missense_Mutation p.K690E 0.59 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2GO-06 7 134916782 134916782 C T STRA8 Silent p.L18L 0.28 TCGA-EE-A2GO-06 7 137801473 137801473 C T AKR1D1 3'UTR 0.23 TCGA-EE-A2GO-06 7 138406744 138406744 A G ATP6V0A4 Silent p.D679D 0.37 TCGA-EE-A2GO-06 7 138444585 138444585 G A ATP6V0A4 Missense_Mutation p.S184F 0.20 deleterious(0.01) possibly_damaging(0.797) TCGA-EE-A2GO-06 7 138601781 138601781 G A KIAA1549 Missense_Mutation p.T864I 0.14 tolerated(0.52) benign(0.001) TCGA-EE-A2GO-06 7 138732424 138732424 G A ZC3HAV1 Silent p.S875S 0.51 TCGA-EE-A2GO-06 7 138831982 138831982 G A TTC26 Missense_Mutation p.R164Q 0.16 tolerated(0.06) possibly_damaging(0.737) TCGA-EE-A2GO-06 7 138968788 138968788 C T UBN2 Missense_Mutation p.A1046V 0.53 tolerated_low_confidence(0.06) possibly_damaging(0.741) TCGA-EE-A2GO-06 7 139793864 139793864 G A KDM7A Missense_Mutation p.H817Y 0.18 deleterious_low_confidence(0.01) benign(0.079) TCGA-EE-A2GO-06 7 140481403 140481403 C T BRAF Missense_Mutation p.G469R 0.17 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A2GO-06 7 141255285 141255285 A C AGK Missense_Mutation p.T7P 0.41 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GO-06 7 141408878 141408878 G A WEE2 Missense_Mutation p.S107N 0.24 tolerated(0.3) benign(0.001) TCGA-EE-A2GO-06 7 141539279 141539279 C T PRSS37 Missense_Mutation p.G12E 0.56 deleterious(0) probably_damaging(0.928) TCGA-EE-A2GO-06 7 141618981 141618981 C T OR9A4 Silent p.F102F 0.42 TCGA-EE-A2GO-06 7 141731519 141731519 C T MGAM Missense_Mutation p.P504S 0.44 deleterious(0.03) benign(0.116) TCGA-EE-A2GO-06 7 141955355 141955355 G A PRSS58 Missense_Mutation p.P60L 0.44 deleterious(0.04) benign(0.362) TCGA-EE-A2GO-06 7 141955356 141955356 G A PRSS58 Missense_Mutation p.P60S 0.46 tolerated(0.94) probably_damaging(0.976) TCGA-EE-A2GO-06 7 142459675 142459675 A T PRSS1 Missense_Mutation p.N84I 0.28 deleterious(0.01) benign(0.345) TCGA-EE-A2GO-06 7 142569368 142569368 G A TRPV6 3'UTR 0.26 TCGA-EE-A2GO-06 7 142569475 142569475 C T TRPV6 Nonsense_Mutation p.W721* 0.26 TCGA-EE-A2GO-06 7 142572683 142572683 G A TRPV6 Silent p.I420I 0.23 TCGA-EE-A2GO-06 7 142641470 142641470 C T KEL Silent p.V477V 0.19 TCGA-EE-A2GO-06 7 142651026 142651026 G A KEL Silent p.I314I 0.26 TCGA-EE-A2GO-06 7 143036616 143036616 G A CLCN1 Missense_Mutation p.G495E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 143175539 143175539 C T TAS2R41 Missense_Mutation p.P192S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 143175752 143175752 G A TAS2R41 Missense_Mutation p.D263N 0.42 tolerated(0.54) benign(0.301) TCGA-EE-A2GO-06 7 143453536 143453536 C T CTAGE6 Missense_Mutation p.E406K 0.12 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2GO-06 7 143882720 143882720 G A CTAGE4 Silent p.V708V 0.07 TCGA-EE-A2GO-06 7 144060537 144060537 G A ARHGEF5 Missense_Mutation p.E259K 0.06 deleterious(0.01) benign(0.014) TCGA-EE-A2GO-06 7 144245588 144245588 G A TPK1 Silent p.N203N 0.11 TCGA-EE-A2GO-06 7 146471420 146471420 C T CNTNAP2 Missense_Mutation p.S52F 0.17 deleterious(0) possibly_damaging(0.566) TCGA-EE-A2GO-06 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.24 tolerated(1) benign(0.006) TCGA-EE-A2GO-06 7 147815352 147815352 G C CNTNAP2 Missense_Mutation p.K842N 0.14 tolerated(0.23) benign(0) TCGA-EE-A2GO-06 7 148080932 148080932 C T CNTNAP2 Missense_Mutation p.P1223S 0.24 tolerated(0.19) benign(0.254) TCGA-EE-A2GO-06 7 148112666 148112666 C T CNTNAP2 Silent p.F1318F 0.45 TCGA-EE-A2GO-06 7 149477972 149477972 C T SSPO RNA 0.27 TCGA-EE-A2GO-06 7 150163835 150163835 G A GIMAP8 Missense_Mutation p.G17R 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 150555987 150555987 C T AOC1 Silent p.F569F 0.19 TCGA-EE-A2GO-06 7 150707276 150707276 C T NOS3 Silent p.F862F 0.43 TCGA-EE-A2GO-06 7 151372556 151372556 G A PRKAG2 Missense_Mutation p.P212S 0.41 tolerated_low_confidence(0.43) benign(0) TCGA-EE-A2GO-06 7 151851387 151851387 G A KMT2C Missense_Mutation p.P4035L 0.22 probably_damaging(0.999) TCGA-EE-A2GO-06 7 151851430 151851430 G A KMT2C Silent p.L4021L 0.21 TCGA-EE-A2GO-06 7 151879490 151879490 T A KMT2C Missense_Mutation p.M1819L 0.24 benign(0.001) TCGA-EE-A2GO-06 7 154863311 154863311 G A HTR5A Silent p.R234R 0.36 TCGA-EE-A2GO-06 7 155559282 155559282 A - RBM33 Frame_Shift_Del p.E1103Gfs*12 0.20 TCGA-EE-A2GO-06 7 156974994 156974994 C T UBE3C Silent p.F321F 0.29 TCGA-EE-A2GO-06 7 157159237 157159237 T A DNAJB6 Missense_Mutation p.L73I 0.49 deleterious(0.01) possibly_damaging(0.715) TCGA-EE-A2GO-06 7 157387965 157387965 C T PTPRN2 Missense_Mutation p.G821R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 16818694 16818694 G A TSPAN13 Missense_Mutation p.V165I 0.26 tolerated(0.08) benign(0.284) TCGA-EE-A2GO-06 7 2054255 2054255 A G MAD1L1 Missense_Mutation p.I414T 0.44 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2GO-06 7 20698762 20698762 C T ABCB5 Intron 0.42 TCGA-EE-A2GO-06 7 20782554 20782554 C T ABCB5 Missense_Mutation p.R1027C 0.45 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 7 21630810 21630810 G A DNAH11 Missense_Mutation p.G761E 0.24 possibly_damaging(0.462) TCGA-EE-A2GO-06 7 21788349 21788349 C T DNAH11 Nonsense_Mutation p.Q2895* 0.31 TCGA-EE-A2GO-06 7 21924013 21924013 C T DNAH11 Silent p.F4171F 0.19 TCGA-EE-A2GO-06 7 21945995 21945995 G A CDCA7L Missense_Mutation p.P278L 0.29 tolerated(0.39) possibly_damaging(0.533) TCGA-EE-A2GO-06 7 23351912 23351912 C T IGF2BP3 3'UTR 0.28 TCGA-EE-A2GO-06 7 23809272 23809272 C T STK31 Missense_Mutation p.S537F 0.25 deleterious(0.03) possibly_damaging(0.775) TCGA-EE-A2GO-06 7 25266258 25266258 G T NPVF Missense_Mutation p.Q176K 0.45 tolerated(0.3) benign(0.011) TCGA-EE-A2GO-06 7 28547231 28547231 C T CREB5 Intron 0.24 TCGA-EE-A2GO-06 7 2946183 2946183 C A CARD11 3'UTR 0.54 TCGA-EE-A2GO-06 7 31008745 31008745 C T GHRHR Silent p.L76L 0.55 TCGA-EE-A2GO-06 7 31692350 31692350 G A CCDC129 Intron 0.25 TCGA-EE-A2GO-06 7 31918623 31918623 C T PDE1C Silent p.G197G 0.20 TCGA-EE-A2GO-06 7 34125405 34125405 A G BMPER Silent p.E482E 0.23 TCGA-EE-A2GO-06 7 34192882 34192882 G A BMPER Silent p.R685R 0.20 TCGA-EE-A2GO-06 7 36193980 36193980 C T EEPD1 Missense_Mutation p.S16L 0.42 deleterious(0.01) benign(0.058) TCGA-EE-A2GO-06 7 36483366 36483366 C T ANLN Silent p.T991T 0.52 TCGA-EE-A2GO-06 7 37780714 37780714 C T GPR141 Missense_Mutation p.P240L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 37890317 37890317 G A NME8 Missense_Mutation p.E60K 0.26 deleterious(0.04) possibly_damaging(0.477) TCGA-EE-A2GO-06 7 38370115 38370115 G A TRGV8 Silent p.A61A 0.40 TCGA-EE-A2GO-06 7 38725171 38725171 C T FAM183B 3'UTR 0.44 TCGA-EE-A2GO-06 7 38725172 38725172 C T FAM183B 3'UTR 0.44 TCGA-EE-A2GO-06 7 4026948 4026948 G A SDK1 Missense_Mutation p.E709K 0.20 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A2GO-06 7 4116663 4116663 A G SDK1 Missense_Mutation p.N1015S 0.26 tolerated(0.39) benign(0.014) TCGA-EE-A2GO-06 7 43918515 43918515 G A URGCP Missense_Mutation p.P183S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GO-06 7 44120458 44120458 C G POLM Missense_Mutation p.W82C 0.41 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 7 44146364 44146364 C T AEBP1 Missense_Mutation p.P158L 0.15 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A2GO-06 7 44553139 44553139 A C NPC1L1 Silent p.A1329A 0.20 TCGA-EE-A2GO-06 7 44575477 44575477 G A NPC1L1 Silent p.L649L 0.30 TCGA-EE-A2GO-06 7 44805845 44805845 C T ZMIZ2 Silent p.T775T 0.24 TCGA-EE-A2GO-06 7 45930179 45930179 G A IGFBP1 Missense_Mutation p.E128K 0.41 deleterious(0.03) possibly_damaging(0.873) TCGA-EE-A2GO-06 7 47408095 47408095 G A TNS3 Silent p.I716I 0.27 TCGA-EE-A2GO-06 7 47840444 47840444 G A PKD1L1 Missense_Mutation p.H2666Y 0.31 tolerated(0.16) benign(0.288) TCGA-EE-A2GO-06 7 48312175 48312175 A T ABCA13 Missense_Mutation p.Y971F 0.30 benign(0.014) TCGA-EE-A2GO-06 7 48391796 48391796 C T ABCA13 Missense_Mutation p.S3467F 0.53 benign(0.199) TCGA-EE-A2GO-06 7 4900709 4900709 G A PAPOLB Missense_Mutation p.L244F 0.43 tolerated(0.08) benign(0.357) TCGA-EE-A2GO-06 7 55211105 55211105 C T EGFR Silent p.S116S 0.17 TCGA-EE-A2GO-06 7 55268959 55268959 G A EGFR Missense_Mutation p.D1009N 0.38 deleterious(0.03) possibly_damaging(0.813) TCGA-EE-A2GO-06 7 55863729 55863729 G A SEPT14 Silent p.L392L 0.26 TCGA-EE-A2GO-06 7 56087373 56087373 G A PSPH Silent p.R65R 0.37 TCGA-EE-A2GO-06 7 56174180 56174180 G A CHCHD2 5'UTR 0.56 TCGA-EE-A2GO-06 7 5923553 5923553 G A OCM Missense_Mutation p.R76K 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GO-06 7 64167814 64167814 C T ZNF107 Missense_Mutation p.H378Y 0.25 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2GO-06 7 64291840 64291840 C T ZNF138 Missense_Mutation p.R48C 0.18 deleterious(0.01) benign(0.045) TCGA-EE-A2GO-06 7 64442459 64442459 G A ZNF117 5'UTR 0.25 TCGA-EE-A2GO-06 7 66270287 66270288 - AA KCTD7 Frame_Shift_Ins p.P328Nfs*21 0.12 TCGA-EE-A2GO-06 7 70252288 70252288 C T AUTS2 Missense_Mutation p.P801L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 70255834 70255834 C T AUTS2 Missense_Mutation p.T1211I 0.29 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GO-06 7 70800709 70800709 C T WBSCR17 Missense_Mutation p.R138C 0.17 deleterious(0) benign(0.412) TCGA-EE-A2GO-06 7 71571238 71571238 C T CALN1 Missense_Mutation p.G96S 0.16 deleterious(0) possibly_damaging(0.731) TCGA-EE-A2GO-06 7 72396946 72396946 C T POM121 5'UTR 0.21 TCGA-EE-A2GO-06 7 73279743 73279743 C T WBSCR28 Missense_Mutation p.L165F 0.16 tolerated(0.69) benign(0.262) TCGA-EE-A2GO-06 7 73474706 73474706 G C ELN Missense_Mutation p.R541P 0.37 unknown(0) TCGA-EE-A2GO-06 7 7480461 7480461 T A COL28A1 Missense_Mutation p.N561I 0.12 tolerated(0.38) probably_damaging(0.946) TCGA-EE-A2GO-06 7 750993 750993 G A PRKAR1B Silent p.L50L 0.24 TCGA-EE-A2GO-06 7 7612814 7612814 C T MIOS Silent p.F236F 0.39 TCGA-EE-A2GO-06 7 81381551 81381551 T C HGF Silent p.K170K 0.43 TCGA-EE-A2GO-06 7 82544283 82544283 G A PCLO Missense_Mutation p.T4340I 0.53 unknown(0) TCGA-EE-A2GO-06 7 8257984 8257984 G A ICA1 Missense_Mutation p.S177F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 7 82580555 82580555 C T PCLO Missense_Mutation p.D3117N 0.21 unknown(0) TCGA-EE-A2GO-06 7 82595633 82595633 C T PCLO Silent p.V1157V 0.14 TCGA-EE-A2GO-06 7 82764641 82764641 G T PCLO Missense_Mutation p.S742Y 0.44 unknown(0) TCGA-EE-A2GO-06 7 82784410 82784410 G A PCLO Missense_Mutation p.P516L 0.47 possibly_damaging(0.702) TCGA-EE-A2GO-06 7 83592579 83592579 G A SEMA3A Missense_Mutation p.S601L 0.30 deleterious(0) possibly_damaging(0.714) TCGA-EE-A2GO-06 7 87399922 87399922 G A RUNDC3B Missense_Mutation p.E236K 0.19 deleterious(0.01) possibly_damaging(0.889) TCGA-EE-A2GO-06 7 87785203 87785203 G A ADAM22 Missense_Mutation p.D597N 0.14 tolerated(0.18) possibly_damaging(0.867) TCGA-EE-A2GO-06 7 8790859 8790859 G A NXPH1 Silent p.R92R 0.39 TCGA-EE-A2GO-06 7 88424141 88424141 C T C7orf62 Missense_Mutation p.R39Q 0.45 deleterious(0.01) possibly_damaging(0.738) TCGA-EE-A2GO-06 7 888144 888144 G A SUN1 Intron 0.43 TCGA-EE-A2GO-06 7 88964527 88964527 A T ZNF804B Missense_Mutation p.K744I 0.17 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2GO-06 7 88965049 88965049 G A ZNF804B Missense_Mutation p.G918E 0.23 tolerated(0.08) benign(0.079) TCGA-EE-A2GO-06 7 92098231 92098231 G A ERVW-1 Missense_Mutation p.P489S 0.15 deleterious_low_confidence(0) benign(0.096) TCGA-EE-A2GO-06 7 92732760 92732760 G A SAMD9 Missense_Mutation p.S884F 0.38 tolerated(0.05) benign(0.332) TCGA-EE-A2GO-06 7 92978093 92978093 C T CCDC132 Missense_Mutation p.P760S 0.52 tolerated(0.8) benign(0.137) TCGA-EE-A2GO-06 7 93055567 93055567 G A CALCR 3'UTR 0.13 TCGA-EE-A2GO-06 7 94913509 94913509 C T PPP1R9A Missense_Mutation p.S1159L 0.29 tolerated(0.17) benign(0.281) TCGA-EE-A2GO-06 7 94944730 94944730 C T PON1 Missense_Mutation p.E92K 0.44 tolerated(0.11) benign(0.003) TCGA-EE-A2GO-06 7 98445747 98445747 C T TMEM130 Missense_Mutation p.E414K 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GO-06 7 99305459 99305459 G A CYP3A7 Silent p.S464S 0.46 TCGA-EE-A2GO-06 7 99313380 99313380 C T CYP3A7 Splice_Site p.X224_splice 0.26 TCGA-EE-A2GO-06 7 99758302 99758302 G A GAL3ST4 Missense_Mutation p.P237L 0.22 tolerated(0.07) benign(0.001) TCGA-EE-A2GO-06 7 99798339 99798339 G A GATS 3'UTR 0.45 TCGA-EE-A2GO-06 7 99951131 99951131 C T PILRB 5'UTR 0.42 TCGA-EE-A2GO-06 8 100847425 100847425 G A VPS13B Silent p.R3230R 0.24 TCGA-EE-A2GO-06 8 102705022 102705022 C T NCALD Missense_Mutation p.D161N 0.15 tolerated(0.11) possibly_damaging(0.682) TCGA-EE-A2GO-06 8 103323563 103323563 G A UBR5 Silent p.I860I 0.51 TCGA-EE-A2GO-06 8 103326079 103326079 G A UBR5 Missense_Mutation p.R654W 0.19 deleterious(0) probably_damaging(0.928) TCGA-EE-A2GO-06 8 104447900 104447900 C T DCAF13 Missense_Mutation p.H430Y 0.38 tolerated(0.26) possibly_damaging(0.664) TCGA-EE-A2GO-06 8 10464762 10464762 G A RP1L1 Silent p.S2282S 0.49 TCGA-EE-A2GO-06 8 10469454 10469454 G A RP1L1 Silent p.N718N 0.38 TCGA-EE-A2GO-06 8 105001563 105001563 C T RIMS2 Silent p.T986T 0.20 TCGA-EE-A2GO-06 8 105263835 105263835 C T RIMS2 Silent p.I1279I 0.52 TCGA-EE-A2GO-06 8 105507442 105507442 G T LRP12 Intron 0.25 TCGA-EE-A2GO-06 8 106811056 106811056 C T ZFPM2 Missense_Mutation p.P282S 0.53 tolerated(0.83) benign(0.003) TCGA-EE-A2GO-06 8 107773477 107773477 C T ABRA Missense_Mutation p.D312N 0.51 deleterious(0) possibly_damaging(0.479) TCGA-EE-A2GO-06 8 110255327 110255327 G A NUDCD1 Missense_Mutation p.P555S 0.18 tolerated(0.3) benign(0.017) TCGA-EE-A2GO-06 8 110503286 110503286 G A PKHD1L1 Missense_Mutation p.G3357E 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 8 11189520 11189520 A T SLC35G5 Missense_Mutation p.H302L 0.64 tolerated(0.59) benign(0.03) TCGA-EE-A2GO-06 8 113303903 113303903 C T CSMD3 Missense_Mutation p.G2937E 0.28 deleterious(0) possibly_damaging(0.579) TCGA-EE-A2GO-06 8 113402906 113402906 C T CSMD3 Missense_Mutation p.G1974E 0.52 tolerated(0.08) probably_damaging(0.95) TCGA-EE-A2GO-06 8 11414214 11414214 G A BLK Missense_Mutation p.G274R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.22 tolerated(0.46) benign(0.348) TCGA-EE-A2GO-06 8 114326951 114326951 C T CSMD3 Missense_Mutation p.G84R 0.17 tolerated(0.08) benign(0.392) TCGA-EE-A2GO-06 8 121211733 121211733 G A COL14A1 Missense_Mutation p.G269R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 121502706 121502706 T A MTBP Missense_Mutation p.F448Y 0.48 tolerated(0.43) benign(0.032) TCGA-EE-A2GO-06 8 124811843 124811843 C T FAM91A1 Silent p.S548S 0.46 TCGA-EE-A2GO-06 8 125551345 125551345 C T TATDN1 5'Flank 0.20 TCGA-EE-A2GO-06 8 126114576 126114576 C T NSMCE2 Missense_Mutation p.P2S 0.46 tolerated_low_confidence(0.13) possibly_damaging(0.641) TCGA-EE-A2GO-06 8 131921973 131921973 C T ADCY8 Missense_Mutation p.E541K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 8 133740151 133740151 G A TMEM71 Missense_Mutation p.S171F 0.19 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2GO-06 8 134042153 134042153 G A TG Missense_Mutation p.G2375E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 134042185 134042185 C T TG Missense_Mutation p.R2386C 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 8 139165249 139165249 T G FAM135B Missense_Mutation p.N490T 0.22 tolerated(0.21) benign(0.004) TCGA-EE-A2GO-06 8 139606344 139606344 G A COL22A1 Missense_Mutation p.P1511S 0.41 unknown(0) TCGA-EE-A2GO-06 8 142160972 142160972 C T DENND3 Nonsense_Mutation p.R179* 0.41 TCGA-EE-A2GO-06 8 142231752 142231752 G A SLC45A4 Silent p.R67R 0.21 TCGA-EE-A2GO-06 8 142367077 142367077 C A GPR20 Missense_Mutation p.G316V 0.17 deleterious(0.03) benign(0.018) TCGA-EE-A2GO-06 8 142367078 142367078 C T GPR20 Missense_Mutation p.G316R 0.16 tolerated(0.07) benign(0.013) TCGA-EE-A2GO-06 8 142446019 142446019 G A PTP4A3 3'Flank 0.15 TCGA-EE-A2GO-06 8 142488719 142488719 C T MROH5 Intron 0.25 TCGA-EE-A2GO-06 8 142500263 142500263 G A MROH5 3'Flank 0.51 TCGA-EE-A2GO-06 8 143558856 143558856 C T BAI1 Missense_Mutation p.P445S 0.21 tolerated(0.06) possibly_damaging(0.876) TCGA-EE-A2GO-06 8 143999044 143999044 G A CYP11B2 Silent p.T71T 0.53 TCGA-EE-A2GO-06 8 143999045 143999045 G A CYP11B2 Missense_Mutation p.T71I 0.52 tolerated(0.17) benign(0.05) TCGA-EE-A2GO-06 8 144378029 144378029 G A ZNF696 Missense_Mutation p.G62R 0.32 tolerated(0.24) probably_damaging(0.953) TCGA-EE-A2GO-06 8 144378412 144378412 C T ZNF696 Silent p.A189A 0.65 TCGA-EE-A2GO-06 8 144997972 144997972 G A PLEC Missense_Mutation p.A2179V 0.20 unknown(0) TCGA-EE-A2GO-06 8 145772559 145772559 G A ARHGAP39 Silent p.S637S 0.16 TCGA-EE-A2GO-06 8 146155981 146155981 G A ZNF16 3'UTR 0.32 TCGA-EE-A2GO-06 8 17401041 17401041 G A SLC7A2 Missense_Mutation p.G105S 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 20062042 20062042 C T ATP6V1B2 Missense_Mutation p.H62Y 0.16 deleterious(0.01) benign(0.154) TCGA-EE-A2GO-06 8 2021502 2021502 G A MYOM2 Missense_Mutation p.D348N 0.25 deleterious(0.04) possibly_damaging(0.898) TCGA-EE-A2GO-06 8 21859730 21859730 G A XPO7 Missense_Mutation p.E964K 0.38 tolerated(0.3) benign(0.025) TCGA-EE-A2GO-06 8 21905469 21905469 C T FGF17 Silent p.P120P 0.11 TCGA-EE-A2GO-06 8 21973190 21973190 G A HR 3'UTR 0.23 TCGA-EE-A2GO-06 8 22582371 22582371 C T PEBP4 Missense_Mutation p.E168K 0.40 deleterious(0) possibly_damaging(0.771) TCGA-EE-A2GO-06 8 22864765 22864765 G A RHOBTB2 Missense_Mutation p.R358Q 0.27 tolerated(0.17) benign(0.103) TCGA-EE-A2GO-06 8 24201063 24201063 C T ADAM28 Silent p.I652I 0.14 TCGA-EE-A2GO-06 8 25177143 25177143 C T DOCK5 Missense_Mutation p.S498L 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 26221326 26221326 C T PPP2R2A Nonsense_Mutation p.R308* 0.53 TCGA-EE-A2GO-06 8 27456144 27456144 G A CLU Silent p.S391S 0.24 TCGA-EE-A2GO-06 8 28196831 28196831 C T PNOC Missense_Mutation p.T134I 0.41 tolerated(1) probably_damaging(0.998) TCGA-EE-A2GO-06 8 28196901 28196901 G A PNOC Silent p.L157L 0.40 TCGA-EE-A2GO-06 8 2876082 2876082 T C CSMD1 Missense_Mutation p.N2649S 0.24 probably_damaging(0.994) TCGA-EE-A2GO-06 8 3046464 3046464 C T CSMD1 Missense_Mutation p.G1823E 0.41 possibly_damaging(0.885) TCGA-EE-A2GO-06 8 30702396 30702396 C T TEX15 Missense_Mutation p.E1380K 0.26 tolerated(0.38) benign(0) TCGA-EE-A2GO-06 8 3224729 3224729 G A CSMD1 Silent p.S980S 0.60 TCGA-EE-A2GO-06 8 32505250 32505250 C T NRG1 Intron 0.37 TCGA-EE-A2GO-06 8 32621578 32621578 G A NRG1 Silent p.T532T 0.45 TCGA-EE-A2GO-06 8 37730499 37730499 G A RAB11FIP1 Silent p.S607S 0.50 TCGA-EE-A2GO-06 8 38880705 38880705 C T ADAM9 Silent p.L259L 0.22 TCGA-EE-A2GO-06 8 38994198 38994198 C T ADAM32 Missense_Mutation p.P54L 0.32 deleterious(0.01) possibly_damaging(0.843) TCGA-EE-A2GO-06 8 39495137 39495137 G A ADAM18 Missense_Mutation p.D248N 0.42 tolerated(0.1) benign(0.094) TCGA-EE-A2GO-06 8 39634655 39634655 G A ADAM2 Missense_Mutation p.S306L 0.30 deleterious(0) probably_damaging(0.922) TCGA-EE-A2GO-06 8 42012131 42012131 T A AP3M2 Intron 0.49 TCGA-EE-A2GO-06 8 43147879 43147879 C T POTEA RNA 0.17 TCGA-EE-A2GO-06 8 51415351 51415351 G A SNTG1 Missense_Mutation p.R126Q 0.45 tolerated(0.06) possibly_damaging(0.899) TCGA-EE-A2GO-06 8 51415352 51415352 G A SNTG1 Silent p.R126R 0.44 TCGA-EE-A2GO-06 8 52336259 52336259 G A PXDNL Silent p.F557F 0.15 TCGA-EE-A2GO-06 8 53044701 53044701 G A ST18 Missense_Mutation p.S828L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 8 53084727 53084727 C T ST18 Missense_Mutation p.E232K 0.38 tolerated(0.15) benign(0.021) TCGA-EE-A2GO-06 8 54142015 54142015 G A OPRK1 Missense_Mutation p.L329F 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 55049898 55049898 C T MRPL15 Missense_Mutation p.P112S 0.21 tolerated(0.17) benign(0.271) TCGA-EE-A2GO-06 8 55533781 55533781 C T RP1 Silent p.T85T 0.43 TCGA-EE-A2GO-06 8 55534689 55534689 C T RP1 Nonsense_Mutation p.Q210* 0.27 TCGA-EE-A2GO-06 8 55537640 55537640 C T RP1 Nonsense_Mutation p.Q400* 0.19 TCGA-EE-A2GO-06 8 55542561 55542561 C T RP1 Missense_Mutation p.S2040L 0.39 tolerated(0.4) benign(0.006) TCGA-EE-A2GO-06 8 62212400 62212400 C T CLVS1 Missense_Mutation p.S5F 0.24 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A2GO-06 8 67509630 67509630 G A MYBL1 Silent p.I149I 0.30 TCGA-EE-A2GO-06 8 69020515 69020515 G A PREX2 Missense_Mutation p.D963N 0.21 tolerated_low_confidence(0.17) possibly_damaging(0.686) TCGA-EE-A2GO-06 8 69033271 69033271 G A PREX2 Silent p.R1237R 0.23 TCGA-EE-A2GO-06 8 69136852 69136852 C T PREX2 Missense_Mutation p.S1589F 0.35 tolerated(0.25) benign(0.259) TCGA-EE-A2GO-06 8 70982036 70982036 C T PRDM14 Silent p.E20E 0.20 TCGA-EE-A2GO-06 8 73480001 73480001 G A KCNB2 Missense_Mutation p.R11K 0.47 tolerated(1) benign(0.002) TCGA-EE-A2GO-06 8 73848639 73848639 C T KCNB2 Missense_Mutation p.S350F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 73848969 73848969 G A KCNB2 Missense_Mutation p.R460Q 0.23 tolerated(0.07) possibly_damaging(0.611) TCGA-EE-A2GO-06 8 73850136 73850136 G A KCNB2 Missense_Mutation p.G849D 0.27 tolerated_low_confidence(0.22) benign(0.009) TCGA-EE-A2GO-06 8 77763759 77763759 C T ZFHX4 Silent p.F1534F 0.26 TCGA-EE-A2GO-06 8 77766907 77766907 G A ZFHX4 Missense_Mutation p.D2584N 0.27 benign(0.178) TCGA-EE-A2GO-06 8 77776537 77776537 C T ZFHX4 Silent p.I3529I 0.38 TCGA-EE-A2GO-06 8 86126115 86126115 G A E2F5 3'UTR 0.52 TCGA-EE-A2GO-06 8 86385933 86385933 G A CA2 Missense_Mutation p.G82R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 8 86575719 86575719 C T REXO1L1P Missense_Mutation p.R3Q 0.23 deleterious_low_confidence(0) benign(0.234) TCGA-EE-A2GO-06 8 87655992 87655992 C T CNGB3 Missense_Mutation p.G389R 0.14 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GO-06 8 92999153 92999153 C T RUNX1T1 Missense_Mutation p.D358N 0.45 deleterious(0.04) benign(0.334) TCGA-EE-A2GO-06 8 93088212 93088212 C A RUNX1T1 Intron 0.18 TCGA-EE-A2GO-06 8 9413391 9413391 G A TNKS 5'Flank 0.29 TCGA-EE-A2GO-06 8 95262548 95262548 G A GEM Missense_Mutation p.S294F 0.47 deleterious(0) probably_damaging(0.916) TCGA-EE-A2GO-06 8 95392417 95392417 A G RAD54B Silent p.L735L 0.28 TCGA-EE-A2GO-06 8 97156932 97156932 G A GDF6 Silent p.S409S 0.50 TCGA-EE-A2GO-06 8 97270726 97270726 A C MTERFD1 Missense_Mutation p.S65A 0.26 tolerated(0.19) benign(0.016) TCGA-EE-A2GO-06 8 99152397 99152397 C T POP1 Missense_Mutation p.A485V 0.31 tolerated(0.15) benign(0.13) TCGA-EE-A2GO-06 8 99441007 99441007 C T KCNS2 Missense_Mutation p.S267F 0.20 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 9 101748250 101748250 C T COL15A1 Silent p.V168V 0.29 TCGA-EE-A2GO-06 9 104238337 104238337 C T TMEM246 Silent p.R346R 0.23 TCGA-EE-A2GO-06 9 107298641 107298641 G A OR13C3 Missense_Mutation p.R152C 0.40 deleterious(0.04) benign(0.066) TCGA-EE-A2GO-06 9 107331863 107331863 G A OR13C8 Missense_Mutation p.G139S 0.34 tolerated(0.48) benign(0.033) TCGA-EE-A2GO-06 9 111625526 111625526 G A ACTL7A Silent p.E308E 0.26 TCGA-EE-A2GO-06 9 112969850 112969850 A G C9orf152 Silent p.L4L 0.39 TCGA-EE-A2GO-06 9 113445080 113445080 A G MUSK Missense_Mutation p.K69R 0.42 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GO-06 9 113563219 113563219 G A MUSK Missense_Mutation p.R854Q 0.41 tolerated(0.17) probably_damaging(0.992) TCGA-EE-A2GO-06 9 114695137 114695137 T C UGCG Missense_Mutation p.Y349H 0.34 deleterious(0) possibly_damaging(0.492) TCGA-EE-A2GO-06 9 115760008 115760008 C T ZNF883 RNA 0.19 TCGA-EE-A2GO-06 9 117062389 117062389 C T COL27A1 Missense_Mutation p.L1542F 0.35 unknown(0) TCGA-EE-A2GO-06 9 117106048 117106048 G A AKNA Missense_Mutation p.P1233S 0.53 tolerated(0.2) benign(0.002) TCGA-EE-A2GO-06 9 117168671 117168671 C T DFNB31 Missense_Mutation p.D734N 0.25 deleterious(0) possibly_damaging(0.566) TCGA-EE-A2GO-06 9 118982356 118982356 G A PAPPA Missense_Mutation p.D687N 0.57 tolerated(0.27) possibly_damaging(0.539) TCGA-EE-A2GO-06 9 124091552 124091552 C T GSN Silent p.L693L 0.36 TCGA-EE-A2GO-06 9 125282099 125282099 A C OR1J4 Missense_Mutation p.K227T 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.71) TCGA-EE-A2GO-06 9 125316096 125316096 C T OR1N2 Silent p.I216I 0.34 TCGA-EE-A2GO-06 9 125377154 125377154 C T OR1Q1 Silent p.I46I 0.28 TCGA-EE-A2GO-06 9 125437455 125437455 G A OR1L3 Missense_Mutation p.G16E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 9 125486370 125486370 C T OR1L4 Silent p.I34I 0.32 TCGA-EE-A2GO-06 9 127572630 127572630 G A OLFML2A Missense_Mutation p.R633Q 0.66 deleterious(0.01) possibly_damaging(0.553) TCGA-EE-A2GO-06 9 128064778 128064778 C T GAPVD1 Silent p.L234L 0.57 TCGA-EE-A2GO-06 9 129594835 129594835 C T ZBTB43 Missense_Mutation p.S16F 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2GO-06 9 129595194 129595194 C T ZBTB43 Missense_Mutation p.H136Y 0.30 tolerated(0.09) benign(0.043) TCGA-EE-A2GO-06 9 130511645 130511645 G A SH2D3C Silent p.L328L 0.33 TCGA-EE-A2GO-06 9 130700144 130700144 C T DPM2 5'UTR 0.26 TCGA-EE-A2GO-06 9 132084151 132084151 C T C9orf106 RNA 0.23 TCGA-EE-A2GO-06 9 133755918 133755918 C T ABL1 Silent p.V534V 0.29 TCGA-EE-A2GO-06 9 134354000 134354000 C T PRRC2B Silent p.A1584A 0.73 TCGA-EE-A2GO-06 9 134497234 134497234 G A RAPGEF1 Silent p.S619S 0.42 TCGA-EE-A2GO-06 9 135173582 135173582 T C SETX Missense_Mutation p.K1889R 0.08 tolerated(0.2) benign(0.126) TCGA-EE-A2GO-06 9 135759301 135759301 C T C9orf9 5'UTR 0.55 TCGA-EE-A2GO-06 9 138376398 138376398 C T PPP1R26 Silent p.S14S 0.61 TCGA-EE-A2GO-06 9 138377663 138377663 C T PPP1R26 Missense_Mutation p.P436L 0.24 tolerated(0.48) probably_damaging(0.958) TCGA-EE-A2GO-06 9 138515950 138515950 G A GLT6D1 Missense_Mutation p.P275L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 9 138516357 138516357 G A GLT6D1 Silent p.T139T 0.38 TCGA-EE-A2GO-06 9 138657536 138657536 C T KCNT1 Missense_Mutation p.P423S 0.38 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2GO-06 9 138830123 138830123 G A UBAC1 Silent p.A349A 0.30 TCGA-EE-A2GO-06 9 139089186 139089186 G A LHX3 Silent p.D398D 0.34 TCGA-EE-A2GO-06 9 139252560 139252560 G A GPSM1 Missense_Mutation p.R639K 0.58 tolerated(0.08) probably_damaging(0.978) TCGA-EE-A2GO-06 9 139873751 139873751 C T PTGDS Missense_Mutation p.H111Y 0.60 tolerated(0.29) benign(0.006) TCGA-EE-A2GO-06 9 139912294 139912294 G A ABCA2 Missense_Mutation p.S719F 0.15 deleterious(0) possibly_damaging(0.747) TCGA-EE-A2GO-06 9 139960769 139960769 C T SAPCD2 Missense_Mutation p.R210H 0.62 deleterious(0.05) benign(0.111) TCGA-EE-A2GO-06 9 14797593 14797593 C T FREM1 Missense_Mutation p.D1248N 0.48 tolerated(0.15) benign(0.002) TCGA-EE-A2GO-06 9 27157949 27157949 G A TEK Missense_Mutation p.G58E 0.43 tolerated(1) probably_damaging(0.973) TCGA-EE-A2GO-06 9 32633240 32633240 C T TAF1L Missense_Mutation p.D780N 0.90 deleterious(0) benign(0.169) TCGA-EE-A2GO-06 9 33347041 33347041 C T NFX1 Missense_Mutation p.H784Y 0.46 deleterious(0) probably_damaging(0.937) TCGA-EE-A2GO-06 9 33441982 33441982 G T AQP3 3'UTR 0.48 TCGA-EE-A2GO-06 9 34497151 34497151 C T DNAI1 Silent p.I285I 0.42 TCGA-EE-A2GO-06 9 35095416 35095416 G A PIGO Silent p.S49S 0.30 TCGA-EE-A2GO-06 9 35095417 35095417 G A PIGO Missense_Mutation p.S49F 0.28 tolerated(0.1) benign(0.001) TCGA-EE-A2GO-06 9 35793935 35793935 C T NPR2 Silent p.I236I 0.48 TCGA-EE-A2GO-06 9 71094357 71094357 G A PGM5 Missense_Mutation p.D395N 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GO-06 9 72874038 72874038 C T SMC5 Missense_Mutation p.P15L 0.26 tolerated_low_confidence(0.18) benign(0) TCGA-EE-A2GO-06 9 75404183 75404183 G A TMC1 Missense_Mutation p.E392K 0.39 tolerated(0.88) benign(0.023) TCGA-EE-A2GO-06 9 75406915 75406915 T A TMC1 Silent p.I446I 0.63 TCGA-EE-A2GO-06 9 77376623 77376623 G A TRPM6 Missense_Mutation p.L1592F 0.70 tolerated_low_confidence(0.06) benign(0.02) TCGA-EE-A2GO-06 9 77407677 77407677 C T TRPM6 Missense_Mutation p.D801N 0.31 deleterious(0.04) possibly_damaging(0.742) TCGA-EE-A2GO-06 9 79324477 79324477 C T PRUNE2 Missense_Mutation p.D905N 0.44 tolerated(0.14) benign(0.025) TCGA-EE-A2GO-06 9 79325107 79325107 C T PRUNE2 Missense_Mutation p.D695N 0.22 deleterious(0) possibly_damaging(0.884) TCGA-EE-A2GO-06 9 79936482 79936482 C T VPS13A Missense_Mutation p.L1884F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 9 82323159 82323159 C T TLE4 Missense_Mutation p.P355S 0.28 tolerated(0.4) benign(0.004) TCGA-EE-A2GO-06 9 8517901 8517901 G A PTPRD Missense_Mutation p.S497L 0.40 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GO-06 9 8518238 8518238 G A PTPRD Missense_Mutation p.P385S 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 9 8524996 8524996 C T PTPRD Missense_Mutation p.G203E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 9 85611959 85611959 G A RASEF Missense_Mutation p.L630F 0.41 deleterious(0) probably_damaging(0.946) TCGA-EE-A2GO-06 9 86452022 86452022 G A KIF27 Missense_Mutation p.S1367F 0.59 deleterious(0.02) possibly_damaging(0.729) TCGA-EE-A2GO-06 9 91150289 91150289 C T NXNL2 5'UTR 0.27 TCGA-EE-A2GO-06 9 95179324 95179324 C T OMD Missense_Mutation p.E173K 0.41 tolerated(1) benign(0.001) TCGA-EE-A2GO-06 9 95373626 95373626 G A CENPP Missense_Mutation p.E199K 0.68 deleterious(0.04) possibly_damaging(0.621) TCGA-EE-A2GO-06 9 95483034 95483034 C T BICD2 Missense_Mutation p.E204K 0.36 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GO-06 9 95483035 95483035 C T BICD2 Silent p.V203V 0.33 TCGA-EE-A2GO-06 9 96407999 96407999 C T PHF2 Missense_Mutation p.P130S 0.52 tolerated(0.71) unknown(0) TCGA-EE-A2GO-06 9 98643254 98643254 A T ERCC6L2 Silent p.S61S 0.64 TCGA-EE-A2GO-06 X 100104886 100104886 C T NOX1 Missense_Mutation p.D391N 0.17 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GO-06 X 100291974 100291974 C T TRMT2B Missense_Mutation p.G176E 0.24 deleterious(0.01) possibly_damaging(0.847) TCGA-EE-A2GO-06 X 10031525 10031525 G A WWC3 5'UTR 0.25 TCGA-EE-A2GO-06 X 101097732 101097732 C T NXF5 Silent p.R11R 0.25 TCGA-EE-A2GO-06 X 101409140 101409140 C T BEX5 Missense_Mutation p.G33E 0.58 tolerated(0.08) benign(0.096) TCGA-EE-A2GO-06 X 101576753 101576753 G A NXF2 Missense_Mutation p.D417N 0.62 tolerated(0.17) benign(0.044) TCGA-EE-A2GO-06 X 101624696 101624696 C T NXF2B Intron 0.21 TCGA-EE-A2GO-06 X 103494830 103494830 G A ESX1 3'UTR 0.26 TCGA-EE-A2GO-06 X 103499521 103499521 G A ESX1 Missense_Mutation p.L4F 0.35 tolerated_low_confidence(0.08) possibly_damaging(0.587) TCGA-EE-A2GO-06 X 104464309 104464309 C T TEX13A Missense_Mutation p.G190E 0.26 tolerated(0.33) probably_damaging(0.972) TCGA-EE-A2GO-06 X 106109168 106109168 C T TBC1D8B Missense_Mutation p.S856F 0.44 tolerated(0.06) benign(0.396) TCGA-EE-A2GO-06 X 106882636 106882636 G A PRPS1 Silent p.K78K 0.56 TCGA-EE-A2GO-06 X 107224621 107224621 G A TEX13B Missense_Mutation p.P210S 0.27 tolerated(0.74) benign(0.006) TCGA-EE-A2GO-06 X 107418929 107418929 C T COL4A6 Missense_Mutation p.G930R 0.33 probably_damaging(1) TCGA-EE-A2GO-06 X 107911600 107911600 C T COL4A5 Missense_Mutation p.P1219L 0.33 unknown(0) TCGA-EE-A2GO-06 X 107979468 107979468 G A IRS4 Missense_Mutation p.S36F 0.23 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-EE-A2GO-06 X 109764434 109764434 G A TDGF1P3 RNA 0.44 TCGA-EE-A2GO-06 X 110644320 110644320 C T DCX Silent p.K282K 0.80 TCGA-EE-A2GO-06 X 11161934 11161934 C T ARHGAP6 Intron 0.30 TCGA-EE-A2GO-06 X 112021851 112021851 G A AMOT Missense_Mutation p.P1067S 0.29 probably_damaging(0.914) TCGA-EE-A2GO-06 X 11317009 11317009 C T AMELX Silent p.F176F 0.78 TCGA-EE-A2GO-06 X 114877744 114877744 C T PLS3 Silent p.F369F 0.53 TCGA-EE-A2GO-06 X 115588829 115588829 C T SLC6A14 Missense_Mutation p.P557S 0.28 tolerated(0.67) benign(0.014) TCGA-EE-A2GO-06 X 117053617 117053617 C T KLHL13 Missense_Mutation p.R149K 0.23 tolerated(1) benign(0.003) TCGA-EE-A2GO-06 X 117532377 117532377 A G WDR44 Silent p.E406E 0.28 TCGA-EE-A2GO-06 X 117900881 117900881 T G IL13RA1 Missense_Mutation p.N317K 0.30 tolerated(0.88) benign(0.423) TCGA-EE-A2GO-06 X 118222243 118222243 T A KIAA1210 Nonsense_Mutation p.K984* 0.20 TCGA-EE-A2GO-06 X 118986781 118986781 T A UPF3B Missense_Mutation p.E37D 0.28 tolerated(0.22) benign(0.007) TCGA-EE-A2GO-06 X 119694132 119694132 G A CUL4B Missense_Mutation p.S139F 0.35 deleterious(0.04) benign(0.146) TCGA-EE-A2GO-06 X 120009405 120009405 G A CT47B1 Silent p.P40P 0.31 TCGA-EE-A2GO-06 X 122538699 122538699 G A GRIA3 Silent p.G478G 0.29 TCGA-EE-A2GO-06 X 122760433 122760433 C T THOC2 Missense_Mutation p.M946I 0.20 tolerated(0.16) benign(0) TCGA-EE-A2GO-06 X 123514527 123514527 C T TENM1 Silent p.G2686G 0.12 TCGA-EE-A2GO-06 X 123838892 123838892 G A TENM1 Missense_Mutation p.T329I 0.53 tolerated(0.12) benign(0.365) TCGA-EE-A2GO-06 X 125299075 125299075 C T DCAF12L2 Missense_Mutation p.G278E 0.34 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GO-06 X 125299239 125299239 G A DCAF12L2 Silent p.D223D 0.17 TCGA-EE-A2GO-06 X 125299403 125299403 C T DCAF12L2 Missense_Mutation p.E169K 0.33 tolerated(0.14) benign(0.093) TCGA-EE-A2GO-06 X 128691376 128691376 T C OCRL Silent p.L105L 0.31 TCGA-EE-A2GO-06 X 128709929 128709929 G A OCRL Missense_Mutation p.S590N 0.26 tolerated(0.14) benign(0.011) TCGA-EE-A2GO-06 X 128710349 128710349 C T OCRL Silent p.I645I 0.29 TCGA-EE-A2GO-06 X 129059154 129059154 C T UTP14A Missense_Mutation p.P578S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GO-06 X 129148755 129148755 C T BCORL1 Silent p.T669T 0.17 TCGA-EE-A2GO-06 X 129263482 129263482 C G AIFM1 3'UTR 0.35 TCGA-EE-A2GO-06 X 129480527 129480527 C T SLC25A14 Missense_Mutation p.P60L 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 X 129629187 129629187 G A RP1-274L7.1 Intron 0.30 TCGA-EE-A2GO-06 X 129629963 129629963 A T RP1-274L7.1 Intron 0.29 TCGA-EE-A2GO-06 X 132161645 132161645 C G USP26 Missense_Mutation p.E202Q 0.39 tolerated(0.56) benign(0.001) TCGA-EE-A2GO-06 X 132730486 132730486 G A GPC3 Nonsense_Mutation p.Q542* 0.36 TCGA-EE-A2GO-06 X 133378858 133378858 G A CCDC160 Missense_Mutation p.E10K 0.47 deleterious(0.02) benign(0) TCGA-EE-A2GO-06 X 134424998 134424998 G A ZNF75D Missense_Mutation p.P254S 0.29 deleterious(0.01) benign(0.099) TCGA-EE-A2GO-06 X 134714075 134714075 A T DDX26B Nonsense_Mutation p.K791* 0.58 TCGA-EE-A2GO-06 X 135289325 135289325 G A FHL1 Missense_Mutation p.G103R 0.63 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GO-06 X 135482077 135482077 G A GPR112 Missense_Mutation p.V2793I 0.27 tolerated(0.11) benign(0.098) TCGA-EE-A2GO-06 X 135482252 135482252 T C GPR112 Missense_Mutation p.L2851P 0.24 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GO-06 X 135591303 135591303 G A HTATSF1 Silent p.S296S 0.16 TCGA-EE-A2GO-06 X 135732438 135732438 G T CD40LG Missense_Mutation p.R57M 0.46 tolerated(0.59) benign(0.012) TCGA-EE-A2GO-06 X 136113378 136113378 G A GPR101 Silent p.L152L 0.62 TCGA-EE-A2GO-06 X 13764499 13764499 C T OFD1 Silent p.F193F 0.24 TCGA-EE-A2GO-06 X 138619207 138619207 C T F9 Missense_Mutation p.R43W 0.65 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GO-06 X 140985041 140985041 G A MAGEC3 Silent p.G499G 0.37 TCGA-EE-A2GO-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.36 deleterious_low_confidence(0) benign(0.006) TCGA-EE-A2GO-06 X 145078751 145078751 T G MIR892B RNA 0.31 TCGA-EE-A2GO-06 X 148568539 148568539 C T IDS Missense_Mutation p.R155K 0.57 tolerated(0.15) benign(0.002) TCGA-EE-A2GO-06 X 148585715 148585715 C T IDS Missense_Mutation p.S71N 0.16 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GO-06 X 148627084 148627084 A G CXorf40A Intron 0.58 TCGA-EE-A2GO-06 X 149809855 149809855 G A MTM1 Silent p.R214R 0.40 TCGA-EE-A2GO-06 X 150349148 150349148 G T GPR50 Missense_Mutation p.V365F 0.55 deleterious(0) benign(0.366) TCGA-EE-A2GO-06 X 150868529 150868529 C T PRRG3 Silent p.F23F 0.30 TCGA-EE-A2GO-06 X 150869197 150869197 C T PRRG3 Missense_Mutation p.P130S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GO-06 X 151283571 151283571 G A RP11-1007I13.4 RNA 0.36 TCGA-EE-A2GO-06 X 151336952 151336952 C T GABRA3 Silent p.K409K 0.53 TCGA-EE-A2GO-06 X 151899902 151899902 G A MAGEA12 Missense_Mutation p.S300F 0.26 deleterious(0.04) benign(0.23) TCGA-EE-A2GO-06 X 151935675 151935675 G A MAGEA3 Silent p.I164I 0.35 TCGA-EE-A2GO-06 X 152160170 152160170 A T PNMA5 5'UTR 0.30 TCGA-EE-A2GO-06 X 152830489 152830489 C T ATP2B3 Silent p.I1090I 0.69 TCGA-EE-A2GO-06 X 152915590 152915590 C T DUSP9 Missense_Mutation p.P329S 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 X 153032758 153032758 G A PLXNB3 Missense_Mutation p.G182D 0.39 tolerated(0.13) probably_damaging(0.997) TCGA-EE-A2GO-06 X 153037321 153037321 C T PLXNB3 Silent p.V863V 0.28 TCGA-EE-A2GO-06 X 153055697 153055697 C T IDH3G Silent p.G62G 0.33 TCGA-EE-A2GO-06 X 153420166 153420166 C T OPN1LW Silent p.L232L 0.25 TCGA-EE-A2GO-06 X 153588743 153588743 G A FLNA Silent p.F1140F 0.48 TCGA-EE-A2GO-06 X 153633210 153633210 C T DNASE1L1 Silent p.L90L 0.25 TCGA-EE-A2GO-06 X 153662768 153662768 C T ATP6AP1 Missense_Mutation p.S300F 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 X 153701091 153701091 G A PLXNA3 3'UTR 0.22 TCGA-EE-A2GO-06 X 154156961 154156961 C T F8 Missense_Mutation p.D1702N 0.38 tolerated(0.35) benign(0.013) TCGA-EE-A2GO-06 X 154158767 154158767 T C F8 Missense_Mutation p.K1100E 0.52 tolerated(0.19) benign(0.038) TCGA-EE-A2GO-06 X 154493499 154493499 G A RAB39B Silent p.I25I 0.53 TCGA-EE-A2GO-06 X 155004261 155004261 G A SPRY3 Missense_Mutation p.G243E 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GO-06 X 1713000 1713000 C T AKAP17A Silent p.F215F 0.28 TCGA-EE-A2GO-06 X 1761856 1761856 C T ASMT Silent p.F357F 0.71 TCGA-EE-A2GO-06 X 17819282 17819282 C T RAI2 Silent p.L283L 0.28 TCGA-EE-A2GO-06 X 21875652 21875652 G A YY2 Silent p.R350R 0.24 TCGA-EE-A2GO-06 X 21996172 21996172 A T SMS Silent p.G200G 0.60 TCGA-EE-A2GO-06 X 24229003 24229003 C T ZFX Missense_Mutation p.S643L 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GO-06 X 27997042 27997042 C T DCAF8L1 3'UTR 0.44 TCGA-EE-A2GO-06 X 2876406 2876406 C T ARSE Missense_Mutation p.D32N 0.21 tolerated(0.48) benign(0.194) TCGA-EE-A2GO-06 X 2933366 2933366 C T ARSH Silent p.I232I 0.30 TCGA-EE-A2GO-06 X 3007547 3007547 G A ARSF Missense_Mutation p.E281K 0.28 tolerated(0.55) benign(0.004) TCGA-EE-A2GO-06 X 3239130 3239130 A T MXRA5 Missense_Mutation p.N1532K 0.25 deleterious(0.01) benign(0.296) TCGA-EE-A2GO-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.57 TCGA-EE-A2GO-06 X 32536166 32536166 G A DMD Missense_Mutation p.R751W 0.25 probably_damaging(0.963) TCGA-EE-A2GO-06 X 32867892 32867892 C T DMD Missense_Mutation p.G47R 0.52 probably_damaging(0.998) TCGA-EE-A2GO-06 X 34148451 34148451 C T FAM47A Missense_Mutation p.E649K 0.53 tolerated(0.2) probably_damaging(0.953) TCGA-EE-A2GO-06 X 34148572 34148572 G A FAM47A Silent p.L608L 0.61 TCGA-EE-A2GO-06 X 35988925 35988925 C T CXorf22 Missense_Mutation p.H619Y 0.31 deleterious(0) benign(0.165) TCGA-EE-A2GO-06 X 37641431 37641431 C T CYBB Missense_Mutation p.L46F 0.31 deleterious(0) benign(0.081) TCGA-EE-A2GO-06 X 37850445 37850445 G A CXorf27 Silent p.%3D 0.36 TCGA-EE-A2GO-06 X 38156589 38156589 G A RPGR Silent p.N454N 0.42 TCGA-EE-A2GO-06 X 39933240 39933240 G A BCOR Silent p.S453S 0.54 TCGA-EE-A2GO-06 X 45013353 45013353 C T CXorf36 Missense_Mutation p.E255K 0.29 tolerated(0.1) benign(0.234) TCGA-EE-A2GO-06 X 46433872 46433872 G A CHST7 Missense_Mutation p.R169Q 0.36 tolerated(0.9) benign(0.007) TCGA-EE-A2GO-06 X 46434747 46434747 C T CHST7 Missense_Mutation p.R461C 0.69 deleterious(0.01) benign(0.298) TCGA-EE-A2GO-06 X 47308118 47308118 C T ZNF41 Missense_Mutation p.G351R 0.49 tolerated(0.54) probably_damaging(0.936) TCGA-EE-A2GO-06 X 47308281 47308281 T A ZNF41 Missense_Mutation p.E296D 0.57 deleterious(0.01) possibly_damaging(0.78) TCGA-EE-A2GO-06 X 47485869 47485869 C T CFP Silent p.R330R 0.32 TCGA-EE-A2GO-06 X 47497358 47497358 G A ELK1 Missense_Mutation p.T293I 0.72 tolerated(0.09) benign(0.221) TCGA-EE-A2GO-06 X 48374289 48374289 C T PORCN Silent p.F345F 0.54 TCGA-EE-A2GO-06 X 48558701 48558701 C T SUV39H1 Missense_Mutation p.R129C 0.42 deleterious(0) possibly_damaging(0.462) TCGA-EE-A2GO-06 X 48663912 48663912 C T HDAC6 Missense_Mutation p.R127C 0.29 deleterious(0) probably_damaging(0.937) TCGA-EE-A2GO-06 X 48666502 48666502 C T HDAC6 Missense_Mutation p.A232V 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GO-06 X 48823430 48823430 A G KCND1 Missense_Mutation p.L402P 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 X 48839663 48839663 G A GRIPAP1 Missense_Mutation p.R488C 0.39 probably_damaging(0.927) TCGA-EE-A2GO-06 X 48847417 48847417 G A GRIPAP1 Missense_Mutation p.P188L 0.23 benign(0.036) TCGA-EE-A2GO-06 X 48887584 48887584 G A TFE3 3'UTR 0.51 TCGA-EE-A2GO-06 X 48920024 48920024 C T CCDC120 Silent p.P25P 0.61 TCGA-EE-A2GO-06 X 48974083 48974083 G A GPKOW Silent p.T216T 0.18 TCGA-EE-A2GO-06 X 49068393 49068393 G A CACNA1F Silent p.F1366F 0.33 TCGA-EE-A2GO-06 X 49075368 49075368 G A CACNA1F Silent p.S913S 0.31 TCGA-EE-A2GO-06 X 49142941 49142941 G A PPP1R3F Missense_Mutation p.E597K 0.43 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-EE-A2GO-06 X 49161358 49161358 C T GAGE10 Missense_Mutation p.S7L 0.34 tolerated(0.13) benign(0.049) TCGA-EE-A2GO-06 X 49958661 49958661 C T AKAP4 Missense_Mutation p.E235K 0.33 deleterious(0.05) benign(0.252) TCGA-EE-A2GO-06 X 50094290 50094290 C T CCNB3 Silent p.P1337P 0.36 TCGA-EE-A2GO-06 X 50122715 50122715 G A DGKK RNA 0.17 TCGA-EE-A2GO-06 X 52682014 52682014 T C SSX7 Silent p.K30K 0.55 TCGA-EE-A2GO-06 X 52825409 52825409 C T SPANXN5 3'UTR 0.27 TCGA-EE-A2GO-06 X 52842237 52842237 G A XAGE5 Missense_Mutation p.R49K 0.21 tolerated(1) benign(0.13) TCGA-EE-A2GO-06 X 53115420 53115420 G A TSPYL2 Missense_Mutation p.D616N 0.21 tolerated_low_confidence(0.46) benign(0.011) TCGA-EE-A2GO-06 X 53117109 53117109 G A TSPYL2 Silent p.G690G 0.55 TCGA-EE-A2GO-06 X 53265598 53265598 C T IQSEC2 Silent p.T1119T 0.36 TCGA-EE-A2GO-06 X 53279876 53279876 G A IQSEC2 Missense_Mutation p.P628S 0.28 deleterious(0.02) benign(0.237) TCGA-EE-A2GO-06 X 53566768 53566768 C A HUWE1 Missense_Mutation p.D3828Y 0.75 unknown(0) TCGA-EE-A2GO-06 X 53654436 53654436 G A HUWE1 Missense_Mutation p.P472S 0.35 probably_damaging(0.993) TCGA-EE-A2GO-06 X 54337640 54337640 G A WNK3 Nonsense_Mutation p.R208* 0.31 TCGA-EE-A2GO-06 X 54587139 54587139 G A GNL3L 3'UTR 0.65 TCGA-EE-A2GO-06 X 54951462 54951462 C T TRO Silent p.F482F 0.16 TCGA-EE-A2GO-06 X 55020374 55020374 C T PFKFB1 Missense_Mutation p.G23S 0.70 benign(0.018) TCGA-EE-A2GO-06 X 57162557 57162557 C T SPIN2A Missense_Mutation p.M158I 0.18 deleterious(0.03) possibly_damaging(0.815) TCGA-EE-A2GO-06 X 62974279 62974279 C T ARHGEF9 5'UTR 0.23 TCGA-EE-A2GO-06 X 63411497 63411497 T A AMER1 Missense_Mutation p.E557V 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GO-06 X 64141751 64141751 C T ZC4H2 Silent p.Q57Q 0.33 TCGA-EE-A2GO-06 X 6451782 6451782 C T VCX3A 3'UTR 0.28 TCGA-EE-A2GO-06 X 67426472 67426472 C T OPHN1 Silent p.E292E 0.32 TCGA-EE-A2GO-06 X 68382130 68382130 C T PJA1 Missense_Mutation p.E318K 0.59 deleterious(0.03) benign(0.053) TCGA-EE-A2GO-06 X 68836180 68836180 G A EDA Missense_Mutation p.E10K 0.20 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2GO-06 X 69652228 69652228 G A GDPD2 Nonsense_Mutation p.W511* 0.32 TCGA-EE-A2GO-06 X 69652229 69652229 G A GDPD2 Nonsense_Mutation p.W511* 0.32 TCGA-EE-A2GO-06 X 70468055 70468055 C T ZMYM3 Silent p.E644E 0.32 TCGA-EE-A2GO-06 X 70519838 70519838 G A NONO Missense_Mutation p.G443E 0.42 tolerated(0.19) benign(0.091) TCGA-EE-A2GO-06 X 70823771 70823771 C T ACRC Missense_Mutation p.P215L 0.23 unknown(0) TCGA-EE-A2GO-06 X 71427070 71427070 C T ERCC6L Missense_Mutation p.R516Q 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GO-06 X 71710783 71710783 G A HDAC8 Silent p.F208F 0.62 TCGA-EE-A2GO-06 X 71825148 71825148 C T PHKA1 Missense_Mutation p.E930K 0.50 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GO-06 X 72433159 72433159 A T NAP1L2 Missense_Mutation p.F390L 0.58 deleterious(0) possibly_damaging(0.709) TCGA-EE-A2GO-06 X 72667221 72667221 C T CDX4 Silent p.F44F 0.31 TCGA-EE-A2GO-06 X 73046878 73046878 C T XIST RNA 0.35 TCGA-EE-A2GO-06 X 73053138 73053138 G A XIST RNA 0.20 TCGA-EE-A2GO-06 X 73070030 73070030 G A XIST RNA 0.33 TCGA-EE-A2GO-06 X 73524206 73524206 T C ZCCHC13 Silent p.G35G 0.53 TCGA-EE-A2GO-06 X 73641464 73641464 C T SLC16A2 5'UTR 0.11 TCGA-EE-A2GO-06 X 73960628 73960628 C T KIAA2022 Missense_Mutation p.G1255E 0.44 deleterious(0.01) benign(0.021) TCGA-EE-A2GO-06 X 73963455 73963455 G A KIAA2022 Nonsense_Mutation p.R313* 0.19 TCGA-EE-A2GO-06 X 74523298 74523298 T C UPRT Silent p.H294H 0.54 TCGA-EE-A2GO-06 X 75004315 75004315 C T MAGEE2 Missense_Mutation p.G191E 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GO-06 X 76845343 76845343 C T ATRX Missense_Mutation p.E2060K 0.38 benign(0.053) TCGA-EE-A2GO-06 X 77112285 77112285 C T MAGT1 Missense_Mutation p.R238Q 0.32 deleterious(0.03) possibly_damaging(0.832) TCGA-EE-A2GO-06 X 77130972 77130972 G A MAGT1 Silent p.I107I 0.19 TCGA-EE-A2GO-06 X 77373639 77373639 G A PGK1 Missense_Mutation p.E205K 0.29 tolerated(0.25) benign(0.008) TCGA-EE-A2GO-06 X 77912858 77912858 C T ZCCHC5 Missense_Mutation p.E354K 0.36 tolerated(0.06) benign(0.108) TCGA-EE-A2GO-06 X 77912861 77912861 C T ZCCHC5 Missense_Mutation p.D353N 0.65 tolerated(0.89) benign(0.018) TCGA-EE-A2GO-06 X 78010570 78010570 G A LPAR4 Missense_Mutation p.M68I 0.31 deleterious(0.05) benign(0.02) TCGA-EE-A2GO-06 X 83319225 83319225 G A RPS6KA6 3'UTR 0.33 TCGA-EE-A2GO-06 X 83724271 83724271 G A HDX Missense_Mutation p.P154S 0.67 tolerated(0.26) possibly_damaging(0.724) TCGA-EE-A2GO-06 X 8434287 8434287 G A VCX3B Missense_Mutation p.E202K 0.19 deleterious(0.04) unknown(0) TCGA-EE-A2GO-06 X 8766190 8766190 C T FAM9A Splice_Site p.X125_splice 0.23 TCGA-EE-A2GO-06 X 8767046 8767046 C T FAM9A Missense_Mutation p.E61K 0.18 tolerated_low_confidence(0.1) possibly_damaging(0.801) TCGA-EE-A2GO-06 X 9907268 9907268 C T SHROOM2 Silent p.S1391S 0.21 TCGA-EE-A2GO-06 X 99661937 99661937 G A PCDH19 Silent p.I553I 0.29 TCGA-EE-A2GO-06 X 99957034 99957034 G A SYTL4 5'UTR 0.62 TCGA-EE-A2GP-06 10 104416543 104416543 C T TRIM8 Missense_Mutation p.P363L 0.51 deleterious_low_confidence(0) benign(0.175) TCGA-EE-A2GP-06 10 108923956 108923956 C T SORCS1 Missense_Mutation p.R110Q 0.60 tolerated_low_confidence(0.14) benign(0.002) TCGA-EE-A2GP-06 10 115480927 115480927 G A CASP7 Missense_Mutation p.G116S 0.43 deleterious(0.03) benign(0.401) TCGA-EE-A2GP-06 10 116056780 116056780 G A AFAP1L2 Missense_Mutation p.S796L 0.44 deleterious(0) possibly_damaging(0.557) TCGA-EE-A2GP-06 10 118359630 118359630 G A PNLIPRP1 Missense_Mutation p.D296N 0.46 tolerated(0.13) benign(0.007) TCGA-EE-A2GP-06 10 118425131 118425131 G A C10orf82 Missense_Mutation p.P88S 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A2GP-06 10 133930691 133930691 G A JAKMIP3 Silent p.E82E 0.56 TCGA-EE-A2GP-06 10 15106407 15106407 G A OLAH Missense_Mutation p.G156E 0.68 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GP-06 10 25861749 25861749 G A GPR158 Silent p.G562G 0.53 TCGA-EE-A2GP-06 10 26414347 26414347 C T MYO3A Missense_Mutation p.R642W 0.71 deleterious(0) possibly_damaging(0.67) TCGA-EE-A2GP-06 10 29577996 29577996 G A LYZL1 5'UTR 0.70 TCGA-EE-A2GP-06 10 46969395 46969395 G A SYT15 Silent p.I22I 0.29 TCGA-EE-A2GP-06 10 50396379 50396379 C T C10orf128 Translation_Start_Site p.M1? 0.59 tolerated_low_confidence(0.09) benign(0.216) TCGA-EE-A2GP-06 10 50530553 50530553 C A C10orf71 5'UTR 0.75 TCGA-EE-A2GP-06 10 52603813 52603813 C T A1CF Missense_Mutation p.E65K 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GP-06 10 63852746 63852746 C T ARID5B Missense_Mutation p.P1175L 0.25 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GP-06 10 70405196 70405196 C T TET1 Missense_Mutation p.P904S 0.51 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2GP-06 10 73559349 73559349 G A CDH23 Missense_Mutation p.G202E 0.61 tolerated(0.65) benign(0.027) TCGA-EE-A2GP-06 10 84711264 84711264 C T NRG3 Missense_Mutation p.S365L 0.51 deleterious(0.02) possibly_damaging(0.74) TCGA-EE-A2GP-06 10 88451795 88451795 C T LDB3 Silent p.L346L 0.45 TCGA-EE-A2GP-06 10 91497763 91497763 T C KIF20B Silent p.S1015S 0.62 TCGA-EE-A2GP-06 10 95931128 95931128 G A PLCE1 Missense_Mutation p.D562N 0.59 tolerated(0.07) benign(0.11) TCGA-EE-A2GP-06 10 96099536 96099536 G A NOC3L Missense_Mutation p.S641L 0.60 deleterious(0.04) benign(0.201) TCGA-EE-A2GP-06 10 96540335 96540335 C T CYP2C19 Silent p.F187F 0.51 TCGA-EE-A2GP-06 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.37 tolerated(0.42) possibly_damaging(0.633) TCGA-EE-A2GP-06 11 113235695 113235695 T C TTC12 Missense_Mutation p.L652S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 11 117789285 117789285 G A TMPRSS13 Missense_Mutation p.S97F 0.19 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-EE-A2GP-06 11 120852850 120852850 G A GRIK4 Missense_Mutation p.V811I 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2GP-06 11 122805710 122805710 G A C11orf63 Missense_Mutation p.G521R 0.46 tolerated(0.47) benign(0.02) TCGA-EE-A2GP-06 11 123887023 123887023 C T OR10G4 Missense_Mutation p.L248F 0.37 tolerated(0.06) benign(0.424) TCGA-EE-A2GP-06 11 123995109 123995109 C T VWA5A Intron 0.50 TCGA-EE-A2GP-06 11 132180060 132180060 G A NTM Missense_Mutation p.G239E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 11 14287200 14287200 G A RP11-21L19.1 Intron 0.24 TCGA-EE-A2GP-06 11 1651402 1651402 C T KRTAP5-5 Missense_Mutation p.S111F 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2GP-06 11 17548347 17548347 C T USH1C Missense_Mutation p.E178K 0.37 deleterious(0.02) possibly_damaging(0.571) TCGA-EE-A2GP-06 11 18610251 18610251 C T UEVLD 5'Flank 0.50 TCGA-EE-A2GP-06 11 18955361 18955361 C T MRGPRX1 3'UTR 0.20 TCGA-EE-A2GP-06 11 18956447 18956447 G A MRGPRX1 5'UTR 0.18 TCGA-EE-A2GP-06 11 1959783 1959783 C T TNNT3 3'UTR 0.35 TCGA-EE-A2GP-06 11 22777461 22777461 G A GAS2 Missense_Mutation p.G229R 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GP-06 11 2356962 2356962 G A CD81-AS1 Intron 0.37 TCGA-EE-A2GP-06 11 25100135 25100135 G A LUZP2 Silent p.V324V 0.29 TCGA-EE-A2GP-06 11 26463504 26463504 C T ANO3 Missense_Mutation p.S29L 0.31 deleterious_low_confidence(0.01) benign(0.049) TCGA-EE-A2GP-06 11 26720049 26720049 G A SLC5A12 Silent p.I285I 0.35 TCGA-EE-A2GP-06 11 27400305 27400305 C T LGR4 Missense_Mutation p.G328S 0.29 tolerated(0.07) possibly_damaging(0.829) TCGA-EE-A2GP-06 11 28090911 28090911 C T KIF18A Silent p.E495E 0.38 TCGA-EE-A2GP-06 11 33565160 33565160 T A KIAA1549L Missense_Mutation p.I387K 0.34 deleterious_low_confidence(0.02) benign(0.005) TCGA-EE-A2GP-06 11 35454302 35454302 T C PAMR1 Missense_Mutation p.T606A 0.45 tolerated(0.86) benign(0.002) TCGA-EE-A2GP-06 11 36516595 36516595 G A TRAF6 Silent p.I203I 0.27 TCGA-EE-A2GP-06 11 36615100 36615100 G A RAG2 Missense_Mutation p.H207Y 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GP-06 11 40136339 40136339 C T LRRC4C Missense_Mutation p.E502K 0.39 tolerated(0.61) benign(0.141) TCGA-EE-A2GP-06 11 43861552 43861552 T C HSD17B12 Missense_Mutation p.F208L 0.35 deleterious(0) probably_damaging(0.952) TCGA-EE-A2GP-06 11 4470892 4470892 C T OR52K2 Missense_Mutation p.S108F 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A2GP-06 11 4567312 4567312 C T OR52M1 Missense_Mutation p.R298C 0.24 deleterious(0) benign(0.03) TCGA-EE-A2GP-06 11 46564131 46564131 G A AMBRA1 Missense_Mutation p.T389I 0.39 deleterious_low_confidence(0) benign(0.031) TCGA-EE-A2GP-06 11 46722510 46722510 G A ZNF408 5'UTR 0.50 TCGA-EE-A2GP-06 11 46914568 46914568 C T LRP4 Silent p.Q551Q 0.39 TCGA-EE-A2GP-06 11 4869999 4869999 C T OR51S1 Missense_Mutation p.G147D 0.32 tolerated(0.35) benign(0.015) TCGA-EE-A2GP-06 11 4976244 4976244 C T OR51A2 Missense_Mutation p.E234K 0.79 deleterious(0.03) benign(0.33) TCGA-EE-A2GP-06 11 4976408 4976408 G A OR51A2 Missense_Mutation p.S179F 0.32 deleterious(0) probably_damaging(0.918) TCGA-EE-A2GP-06 11 4976899 4976899 G A OR51A2 Silent p.F15F 0.36 TCGA-EE-A2GP-06 11 50003287 50003287 G A OR4C12 Missense_Mutation p.P251S 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GP-06 11 5289587 5289587 G A HBE1 3'UTR 0.55 TCGA-EE-A2GP-06 11 5444294 5444294 G A OR51Q1 Silent p.V288V 0.33 TCGA-EE-A2GP-06 11 55110948 55110948 C T OR4A16 Missense_Mutation p.S91F 0.40 deleterious_low_confidence(0.01) benign(0.295) TCGA-EE-A2GP-06 11 55322011 55322011 G A OR4C15 Missense_Mutation p.E77K 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GP-06 11 55541093 55541093 C T OR5D13 Silent p.I60I 0.16 TCGA-EE-A2GP-06 11 56058443 56058443 G A OR8H1 Silent p.L32L 0.28 TCGA-EE-A2GP-06 11 56309983 56309983 A G OR5M11 Missense_Mutation p.Y251H 0.39 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GP-06 11 57003474 57003474 G A APLNR Silent p.S335S 0.34 TCGA-EE-A2GP-06 11 57886568 57886568 C T OR9I1 Missense_Mutation p.V117M 0.34 tolerated(0.09) benign(0.213) TCGA-EE-A2GP-06 11 58275359 58275359 C T OR5B21 Missense_Mutation p.A74T 0.40 tolerated_low_confidence(0.16) probably_damaging(0.996) TCGA-EE-A2GP-06 11 59211401 59211401 C T OR5A1 Silent p.L254L 0.40 TCGA-EE-A2GP-06 11 59604762 59604762 C T GIF Missense_Mutation p.M252I 0.35 tolerated(0.08) benign(0) TCGA-EE-A2GP-06 11 59807827 59807827 G A OOSP2 5'UTR 0.35 TCGA-EE-A2GP-06 11 60704797 60704797 C T SLC15A3 Missense_Mutation p.G547D 0.38 deleterious(0) possibly_damaging(0.807) TCGA-EE-A2GP-06 11 60777182 60777182 G A CD6 Missense_Mutation p.G307D 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 11 62474847 62474847 G A BSCL2 Intron 0.45 TCGA-EE-A2GP-06 11 63486450 63486450 C T RTN3 Missense_Mutation p.P159L 0.34 deleterious(0) possibly_damaging(0.545) TCGA-EE-A2GP-06 11 63885726 63885726 G A FLRT1 Missense_Mutation p.D663N 0.45 tolerated(0.28) possibly_damaging(0.76) TCGA-EE-A2GP-06 11 64085592 64085592 C T PRDX5 5'UTR 0.38 TCGA-EE-A2GP-06 11 64085593 64085593 C T PRDX5 5'UTR 0.38 TCGA-EE-A2GP-06 11 64597720 64597720 G A CDC42BPG Nonsense_Mutation p.R1105* 0.58 TCGA-EE-A2GP-06 11 64677578 64677578 G A ATG2A Silent p.A599A 0.37 TCGA-EE-A2GP-06 11 64677579 64677579 G A ATG2A Missense_Mutation p.A599V 0.38 tolerated(0.24) benign(0.004) TCGA-EE-A2GP-06 11 65784290 65784290 G A CATSPER1 3'UTR 0.15 TCGA-EE-A2GP-06 11 66322819 66322819 C T CTD-3074O7.2 3'Flank 0.33 TCGA-EE-A2GP-06 11 66639329 66639329 G A PC Silent p.I50I 0.27 TCGA-EE-A2GP-06 11 72539461 72539461 C T ATG16L2 Silent p.L510L 0.34 TCGA-EE-A2GP-06 11 78387364 78387364 C T TENM4 Missense_Mutation p.E1777K 0.33 tolerated(0.18) benign(0.179) TCGA-EE-A2GP-06 11 7949948 7949948 C T OR10A6 Missense_Mutation p.E88K 0.43 tolerated(0.23) benign(0.009) TCGA-EE-A2GP-06 11 92086741 92086741 G A FAT3 Missense_Mutation p.G488E 0.38 probably_damaging(0.994) TCGA-EE-A2GP-06 11 92086899 92086899 G A FAT3 Missense_Mutation p.E541K 0.37 probably_damaging(0.932) TCGA-EE-A2GP-06 11 92568068 92568068 G A FAT3 Missense_Mutation p.E3302K 0.37 probably_damaging(0.977) TCGA-EE-A2GP-06 11 99872807 99872807 C T CNTN5 Missense_Mutation p.P307S 0.77 tolerated(0.05) possibly_damaging(0.718) TCGA-EE-A2GP-06 12 101581218 101581218 G A SLC5A8 Silent p.S303S 0.38 TCGA-EE-A2GP-06 12 10339129 10339129 C T TMEM52B Missense_Mutation p.P63L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 12 10978578 10978578 C T TAS2R10 Nonsense_Mutation p.W97* 0.43 TCGA-EE-A2GP-06 12 116453037 116453037 G A MED13L Missense_Mutation p.S351F 0.26 deleterious(0.01) unknown(0) TCGA-EE-A2GP-06 12 118533381 118533381 G A VSIG10 Silent p.I106I 0.24 TCGA-EE-A2GP-06 12 121878775 121878775 G A KDM2B Missense_Mutation p.R1152W 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 12 121878776 121878776 G A KDM2B Silent p.L1151L 0.42 TCGA-EE-A2GP-06 12 122092317 122092317 C T MORN3 Missense_Mutation p.G109E 0.26 tolerated(0.89) benign(0.019) TCGA-EE-A2GP-06 12 12870980 12870980 C T CDKN1B Silent p.P69P 0.27 TCGA-EE-A2GP-06 12 130941179 130941179 C T RIMBP2 Missense_Mutation p.D57N 0.42 deleterious(0) benign(0.199) TCGA-EE-A2GP-06 12 132445520 132445520 C T EP400 Missense_Mutation p.S119L 0.38 unknown(0) TCGA-EE-A2GP-06 12 15095556 15095556 C T ARHGDIB Missense_Mutation p.R169Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GP-06 12 18234147 18234147 C T RERGL Missense_Mutation p.G199E 0.15 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2GP-06 12 1983818 1983818 C T CACNA2D4 Silent p.R610R 0.12 TCGA-EE-A2GP-06 12 21450448 21450448 A G SLCO1A2 Missense_Mutation p.I322T 0.20 deleterious(0.02) benign(0.057) TCGA-EE-A2GP-06 12 21962820 21962820 C T ABCC9 Silent p.L1427L 0.61 TCGA-EE-A2GP-06 12 283825 283825 G A IQSEC3 Missense_Mutation p.G1059R 0.37 tolerated(0.19) probably_damaging(0.979) TCGA-EE-A2GP-06 12 30790082 30790082 G A IPO8 Silent p.I843I 0.57 TCGA-EE-A2GP-06 12 32735472 32735472 T G FGD4 Intron 0.48 TCGA-EE-A2GP-06 12 32791740 32791740 C T FGD4 Intron 0.31 TCGA-EE-A2GP-06 12 33579337 33579337 G A SYT10 Missense_Mutation p.P82L 0.15 tolerated(0.49) probably_damaging(0.998) TCGA-EE-A2GP-06 12 34175405 34175405 C T ALG10 5'UTR 0.30 TCGA-EE-A2GP-06 12 49050550 49050550 C G KANSL2 Intron 0.10 TCGA-EE-A2GP-06 12 50848199 50848199 C T LARP4 Missense_Mutation p.R374C 0.29 deleterious(0.03) benign(0.028) TCGA-EE-A2GP-06 12 52779113 52779113 C T KRT84 Missense_Mutation p.G86D 0.49 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GP-06 12 54795612 54795612 G A ITGA5 Missense_Mutation p.P752S 0.46 tolerated(0.25) possibly_damaging(0.825) TCGA-EE-A2GP-06 12 56563979 56563979 A C SMARCC2 Missense_Mutation p.N756K 0.36 tolerated(0.41) benign(0) TCGA-EE-A2GP-06 12 56625337 56625337 C T SLC39A5 Silent p.S93S 0.33 TCGA-EE-A2GP-06 12 5672545 5672545 G A ANO2 Missense_Mutation p.R973W 0.50 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GP-06 12 56992444 56992444 G A BAZ2A Silent p.S1892S 0.41 TCGA-EE-A2GP-06 12 57552254 57552254 G A LRP1 Missense_Mutation p.G544E 0.43 benign(0.012) TCGA-EE-A2GP-06 12 57579335 57579335 C T LRP1 Missense_Mutation p.A2162V 0.19 benign(0.03) TCGA-EE-A2GP-06 12 57972125 57972125 G A KIF5A Silent p.Q846Q 0.32 TCGA-EE-A2GP-06 12 6230460 6230460 G A VWF Nonsense_Mutation p.R34* 0.21 TCGA-EE-A2GP-06 12 6230461 6230461 G A VWF Silent p.A33A 0.21 TCGA-EE-A2GP-06 12 62860949 62860949 T - MON2 5'UTR 0.31 TCGA-EE-A2GP-06 12 6881967 6881967 C T LAG3 5'UTR 0.21 TCGA-EE-A2GP-06 12 70824296 70824296 G A KCNMB4 Missense_Mutation p.D166N 0.22 deleterious(0.04) possibly_damaging(0.76) TCGA-EE-A2GP-06 12 70931919 70931919 C T PTPRB Intron 0.32 TCGA-EE-A2GP-06 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.30 deleterious(0.02) benign(0.145) TCGA-EE-A2GP-06 12 71537976 71537976 G A TSPAN8 Silent p.I26I 0.28 TCGA-EE-A2GP-06 12 73056945 73056945 C T TRHDE Silent p.F1015F 0.31 TCGA-EE-A2GP-06 12 7362645 7362645 C T PEX5 Silent p.A597A 0.15 TCGA-EE-A2GP-06 12 7362646 7362646 C T PEX5 Silent p.L598L 0.15 TCGA-EE-A2GP-06 12 75434849 75434849 G A KCNC2 3'UTR 0.39 TCGA-EE-A2GP-06 12 75893575 75893575 G A KRR1 3'UTR 0.26 TCGA-EE-A2GP-06 12 78513272 78513272 C T NAV3 Missense_Mutation p.S1099F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 12 78583874 78583874 G A NAV3 Missense_Mutation p.G2034R 0.48 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GP-06 12 79693241 79693241 C T SYT1 Silent p.I240I 0.40 TCGA-EE-A2GP-06 12 88376946 88376946 C T C12orf50 Missense_Mutation p.D385N 0.19 deleterious(0.03) benign(0.047) TCGA-EE-A2GP-06 12 93968492 93968492 C T SOCS2 Intron 0.39 TCGA-EE-A2GP-06 12 94648508 94648508 C T PLXNC1 Intron 0.48 TCGA-EE-A2GP-06 12 96260898 96260898 C T CCDC38 Missense_Mutation p.E550K 0.19 tolerated(0.2) benign(0.37) TCGA-EE-A2GP-06 12 97078989 97078989 G A C12orf55 Missense_Mutation p.G1996E 0.24 deleterious(0.02) benign(0) TCGA-EE-A2GP-06 12 97137662 97137662 C T C12orf55 Missense_Mutation p.R2511W 0.35 deleterious(0.03) benign(0.078) TCGA-EE-A2GP-06 12 97147565 97147565 G A C12orf55 Missense_Mutation p.D2577N 0.40 tolerated(0.12) benign(0.001) TCGA-EE-A2GP-06 12 99129277 99129277 C T ANKS1B 3'UTR 0.62 TCGA-EE-A2GP-06 13 102345015 102345015 C T ITGBL1 Missense_Mutation p.R366C 0.34 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EE-A2GP-06 13 109535464 109535464 C T MYO16 Missense_Mutation p.L473F 0.38 deleterious(0) possibly_damaging(0.71) TCGA-EE-A2GP-06 13 113208441 113208441 C T TUBGCP3 Nonsense_Mutation p.W299* 0.44 TCGA-EE-A2GP-06 13 25274961 25274961 G A ATP12A Silent p.P600P 0.36 TCGA-EE-A2GP-06 13 32355863 32355863 G A RXFP2 Missense_Mutation p.D281N 0.38 tolerated(0.76) benign(0.005) TCGA-EE-A2GP-06 13 33309342 33309342 G A PDS5B Missense_Mutation p.E761K 0.28 tolerated(0.07) benign(0.341) TCGA-EE-A2GP-06 13 33628014 33628014 C T KL Silent p.D310D 0.30 TCGA-EE-A2GP-06 13 39433503 39433503 G A FREM2 Missense_Mutation p.R2432Q 0.34 tolerated(0.52) benign(0.002) TCGA-EE-A2GP-06 13 41941750 41941750 C T NAA16 Missense_Mutation p.P572L 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 13 43788171 43788171 T A ENOX1 Missense_Mutation p.E629D 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2GP-06 13 46287914 46287914 G A SPERT Missense_Mutation p.E252K 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GP-06 13 52548143 52548143 G A ATP7B Missense_Mutation p.P405S 0.31 tolerated(0.13) benign(0.079) TCGA-EE-A2GP-06 13 77663163 77663163 A G MYCBP2 Missense_Mutation p.V3472A 0.27 possibly_damaging(0.902) TCGA-EE-A2GP-06 13 77700588 77700588 G A MYCBP2 Silent p.F2545F 0.43 TCGA-EE-A2GP-06 13 78176802 78176802 G A SCEL Missense_Mutation p.E331K 0.34 tolerated(0.27) benign(0.009) TCGA-EE-A2GP-06 13 96329538 96329538 G A DNAJC3 Missense_Mutation p.R10Q 0.39 tolerated(0.15) benign(0) TCGA-EE-A2GP-06 14 105413621 105413621 C T AHNAK2 Missense_Mutation p.E2723K 0.68 possibly_damaging(0.628) TCGA-EE-A2GP-06 14 20248479 20248479 G A OR4M1 5'UTR 0.28 TCGA-EE-A2GP-06 14 20612149 20612149 C T OR4N5 Silent p.F85F 0.60 TCGA-EE-A2GP-06 14 24884055 24884055 C T NYNRIN Missense_Mutation p.L1034F 0.61 tolerated_low_confidence(0.2) benign(0.015) TCGA-EE-A2GP-06 14 31762600 31762600 C T RP11-596D21.1 Intron 0.70 TCGA-EE-A2GP-06 14 70497018 70497018 G A SMOC1 3'UTR 0.72 TCGA-EE-A2GP-06 14 79181308 79181308 C T NRXN3 Nonsense_Mutation p.R251* 0.69 TCGA-EE-A2GP-06 14 89220907 89220907 C T EML5 Silent p.K102K 0.55 TCGA-EE-A2GP-06 14 94756668 94756668 C T SERPINA10 Missense_Mutation p.R88Q 0.21 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GP-06 15 102345964 102345964 C T OR4F6 Silent p.F14F 0.50 TCGA-EE-A2GP-06 15 20657625 20657625 C T HERC2P3 RNA 0.21 TCGA-EE-A2GP-06 15 22332730 22332730 C T RP11-69H14.6 RNA 0.31 TCGA-EE-A2GP-06 15 22369431 22369431 C T OR4M2 Missense_Mutation p.P286S 0.22 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A2GP-06 15 25468394 25468394 G A SNORD115-29 RNA 0.45 TCGA-EE-A2GP-06 15 40685565 40685565 C T KNSTRN Intron 0.35 TCGA-EE-A2GP-06 15 43940180 43940180 G A CATSPER2 Missense_Mutation p.S27F 0.23 deleterious(0.03) possibly_damaging(0.818) TCGA-EE-A2GP-06 15 44852491 44852491 C T EIF3J Missense_Mutation p.L206F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GP-06 15 44865889 44865889 G A SPG11 Missense_Mutation p.R2021W 0.34 deleterious(0) benign(0.13) TCGA-EE-A2GP-06 15 45392024 45392024 C T DUOX2 Missense_Mutation p.R1084Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 15 52356175 52356175 C T MAPK6 Missense_Mutation p.P382S 0.31 deleterious(0.03) benign(0.133) TCGA-EE-A2GP-06 15 54707184 54707184 C T UNC13C Missense_Mutation p.P1618S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GP-06 15 58285260 58285260 G A ALDH1A2 Silent p.P189P 0.61 TCGA-EE-A2GP-06 15 65883976 65883976 G A VWA9 Silent p.L303L 0.37 TCGA-EE-A2GP-06 15 66207909 66207909 C T MEGF11 Missense_Mutation p.G791E 0.20 tolerated(0.13) probably_damaging(0.969) TCGA-EE-A2GP-06 15 73615870 73615870 G T HCN4 Missense_Mutation p.S855Y 0.45 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GP-06 15 74622553 74622553 C T CCDC33 Silent p.A438A 0.43 TCGA-EE-A2GP-06 15 75562299 75562299 G A GOLGA6C Missense_Mutation p.E643K 0.12 deleterious(0) benign(0.143) TCGA-EE-A2GP-06 15 75644680 75644680 C T NEIL1 Silent p.P190P 0.29 TCGA-EE-A2GP-06 15 79064127 79064127 G A ADAMTS7 Missense_Mutation p.R726C 0.26 deleterious(0) probably_damaging(0.932) TCGA-EE-A2GP-06 15 79064128 79064128 G A ADAMTS7 Silent p.I725I 0.26 TCGA-EE-A2GP-06 15 83932004 83932004 G A BNC1 Missense_Mutation p.P667S 0.48 deleterious(0.02) benign(0.11) TCGA-EE-A2GP-06 15 85411399 85411399 C T ALPK3 Silent p.S1812S 0.44 TCGA-EE-A2GP-06 15 86686988 86686988 G A AGBL1 Silent p.Q12Q 0.19 TCGA-EE-A2GP-06 15 93444508 93444508 C T CHD2 Missense_Mutation p.S14L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GP-06 15 93543829 93543829 C T CHD2 Missense_Mutation p.P1366S 0.36 tolerated(0.19) possibly_damaging(0.816) TCGA-EE-A2GP-06 15 99678315 99678315 G A TTC23 Missense_Mutation p.S415L 0.26 tolerated(0.3) benign(0) TCGA-EE-A2GP-06 16 1270230 1270230 G A CACNA1H Missense_Mutation p.E2100K 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GP-06 16 16244555 16244555 G T ABCC6 Missense_Mutation p.A1428D 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 16 1837746 1837746 C T NUBP2 Missense_Mutation p.P135S 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 16 20381012 20381012 C T PDILT Splice_Site p.X307_splice 0.49 TCGA-EE-A2GP-06 16 20481027 20481027 C T ACSM2A Silent p.F194F 0.19 TCGA-EE-A2GP-06 16 20976119 20976119 C T DNAH3 Silent p.K3029K 0.50 TCGA-EE-A2GP-06 16 21245054 21245054 G A ANKS4B 5'UTR 0.42 TCGA-EE-A2GP-06 16 2159102 2159102 C T PKD1 Silent p.S2022S 0.18 TCGA-EE-A2GP-06 16 24104162 24104162 C T PRKCB Missense_Mutation p.P194S 0.21 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A2GP-06 16 24373176 24373176 C T CACNG3 Missense_Mutation p.P314S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 16 24373177 24373177 C T CACNG3 Missense_Mutation p.P314L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 16 24581171 24581171 C T RBBP6 Nonsense_Mutation p.R1054* 0.42 TCGA-EE-A2GP-06 16 25239828 25239828 G A AQP8 3'UTR 0.29 TCGA-EE-A2GP-06 16 28354372 28354372 G A NPIPB6 Silent p.S278S 0.72 TCGA-EE-A2GP-06 16 28895898 28895898 G A ATP2A1 Missense_Mutation p.G156R 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 16 28990565 28990565 C T SPNS1 Silent p.L178L 0.18 TCGA-EE-A2GP-06 16 3097455 3097455 C T MMP25 Missense_Mutation p.P47S 0.44 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GP-06 16 31487374 31487374 C T TGFB1I1 Silent p.F252F 0.35 TCGA-EE-A2GP-06 16 3254843 3254843 C T OR1F1 Silent p.I199I 0.47 TCGA-EE-A2GP-06 16 33647383 33647383 C T RP11-812E19.9 Missense_Mutation p.D73N 0.43 tolerated_low_confidence(0.46) benign(0.001) TCGA-EE-A2GP-06 16 3795308 3795308 A G CREBBP Missense_Mutation p.V1295A 0.21 unknown(0) TCGA-EE-A2GP-06 16 3860727 3860727 T A CREBBP Silent p.G284G 0.46 TCGA-EE-A2GP-06 16 67858577 67858577 G A TSNAXIP1 Missense_Mutation p.M137I 0.50 tolerated(0.23) benign(0.039) TCGA-EE-A2GP-06 16 68325482 68325482 G A SLC7A6 Missense_Mutation p.G314S 0.67 tolerated(0.08) benign(0.443) TCGA-EE-A2GP-06 16 72164153 72164153 C T PMFBP1 Missense_Mutation p.D581N 0.69 deleterious(0.02) benign(0.019) TCGA-EE-A2GP-06 16 815753 815753 G A MSLN Silent p.R286R 0.19 TCGA-EE-A2GP-06 16 85112676 85112676 C T KIAA0513 Intron 0.65 TCGA-EE-A2GP-06 16 87678069 87678069 C T JPH3 Silent p.F196F 0.61 TCGA-EE-A2GP-06 17 10369674 10369674 G A MYH4 Silent p.I88I 0.60 TCGA-EE-A2GP-06 17 10404526 10404526 G A MYH1 Silent p.N1213N 0.72 TCGA-EE-A2GP-06 17 11603201 11603201 G T DNAH9 Splice_Site p.X1675_splice 0.63 TCGA-EE-A2GP-06 17 1373566 1373566 T C MYO1C Missense_Mutation p.D810G 0.80 tolerated(0.39) probably_damaging(0.998) TCGA-EE-A2GP-06 17 18022092 18022092 C T MYO15A 5'UTR 0.91 TCGA-EE-A2GP-06 17 21319755 21319755 C T KCNJ12 Silent p.F367F 0.27 TCGA-EE-A2GP-06 17 26089931 26089931 G A NOS2 Missense_Mutation p.S898F 0.55 deleterious(0.01) possibly_damaging(0.836) TCGA-EE-A2GP-06 17 3144152 3144152 C T OR1D4 RNA 0.43 TCGA-EE-A2GP-06 17 33954524 33954524 G T AP2B1 Missense_Mutation p.Q353H 0.66 deleterious(0.02) benign(0.04) TCGA-EE-A2GP-06 17 34263791 34263791 C T LYZL6 Silent p.R115R 0.53 TCGA-EE-A2GP-06 17 34263826 34263826 G A LYZL6 Missense_Mutation p.P104S 0.50 tolerated(0.21) benign(0.146) TCGA-EE-A2GP-06 17 38348926 38348926 C T RAPGEFL1 Silent p.F369F 0.67 TCGA-EE-A2GP-06 17 42457168 42457168 G A ITGA2B Silent p.F589F 0.63 TCGA-EE-A2GP-06 17 42882355 42882355 A G GJC1 Silent p.Y277Y 0.74 TCGA-EE-A2GP-06 17 42940269 42940269 G A EFTUD2 Silent p.P473P 0.56 TCGA-EE-A2GP-06 17 43332509 43332509 G A SPATA32 Missense_Mutation p.S347F 0.51 deleterious(0) benign(0.361) TCGA-EE-A2GP-06 17 48601104 48601104 C T MYCBPAP Silent p.L575L 0.63 TCGA-EE-A2GP-06 17 51902066 51902066 G A KIF2B Missense_Mutation p.G558R 0.56 tolerated(0.54) benign(0.01) TCGA-EE-A2GP-06 17 6376061 6376061 C T PITPNM3 Missense_Mutation p.E449K 0.54 tolerated(0.07) possibly_damaging(0.544) TCGA-EE-A2GP-06 17 71166579 71166579 G A SSTR2 3'UTR 0.34 TCGA-EE-A2GP-06 17 71223381 71223381 C T FAM104A Missense_Mutation p.E82K 0.35 tolerated(0.16) benign(0.265) TCGA-EE-A2GP-06 17 7134113 7134113 C A DVL2 Silent p.V66V 0.68 TCGA-EE-A2GP-06 17 7134114 7134114 A C DVL2 Missense_Mutation p.V66G 0.72 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 17 72368514 72368514 G A GPR142 Silent p.R388R 0.25 TCGA-EE-A2GP-06 17 72915799 72915799 C T USH1G Missense_Mutation p.D378N 0.39 deleterious(0.01) benign(0.307) TCGA-EE-A2GP-06 17 7365360 7365360 G A ZBTB4 Missense_Mutation p.P981S 0.31 probably_damaging(0.968) TCGA-EE-A2GP-06 17 74003914 74003914 G A EVPL Missense_Mutation p.S1791F 0.43 deleterious(0) probably_damaging(0.959) TCGA-EE-A2GP-06 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 17 7683947 7683947 G A DNAH2 Splice_Site p.X1951_splice 0.62 TCGA-EE-A2GP-06 17 78410092 78410092 C T ENDOV 3'UTR 0.21 TCGA-EE-A2GP-06 17 79827107 79827107 G A ARHGDIA Silent p.N119N 0.41 TCGA-EE-A2GP-06 17 80382279 80382279 C T HEXDC Silent p.L32L 0.16 TCGA-EE-A2GP-06 17 8738700 8738700 C T PIK3R6 Missense_Mutation p.A179T 0.64 tolerated(0.07) possibly_damaging(0.828) TCGA-EE-A2GP-06 18 21519301 21519301 C T LAMA3 Missense_Mutation p.P2993S 0.56 possibly_damaging(0.562) TCGA-EE-A2GP-06 18 44036630 44036630 C T RNF165 3'UTR 0.54 TCGA-EE-A2GP-06 18 46284619 46284619 C T CTIF Missense_Mutation p.P305L 0.65 tolerated_low_confidence(0.26) benign(0.001) TCGA-EE-A2GP-06 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.62 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2GP-06 18 61326644 61326644 G A SERPINB3 Silent p.L114L 0.66 TCGA-EE-A2GP-06 18 67843921 67843921 G A RTTN Missense_Mutation p.P489L 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 19 10157839 10157839 C T C3P1 RNA 0.51 TCGA-EE-A2GP-06 19 12780853 12780853 C T WDR83 Missense_Mutation p.R56W 0.53 deleterious(0) possibly_damaging(0.65) TCGA-EE-A2GP-06 19 12856465 12856465 G A ASNA1 Silent p.T167T 0.21 TCGA-EE-A2GP-06 19 12936603 12936603 A C RTBDN Missense_Mutation p.S235A 0.23 tolerated(0.97) unknown(0) TCGA-EE-A2GP-06 19 13325352 13325352 G A CACNA1A Silent p.S1934S 0.45 TCGA-EE-A2GP-06 19 14593660 14593660 G C GIPC1 Silent p.P43P 0.50 TCGA-EE-A2GP-06 19 14593661 14593661 G A GIPC1 Missense_Mutation p.P43L 0.43 tolerated(0.13) benign(0) TCGA-EE-A2GP-06 19 14705455 14705455 G A CLEC17A Missense_Mutation p.E108K 0.53 tolerated(0.3) benign(0.023) TCGA-EE-A2GP-06 19 14772913 14772913 G A EMR3 Missense_Mutation p.P73S 0.43 tolerated(0.62) possibly_damaging(0.682) TCGA-EE-A2GP-06 19 15760868 15760868 G A CYP4F3 Missense_Mutation p.D265N 0.21 tolerated(0.39) benign(0.009) TCGA-EE-A2GP-06 19 15807813 15807813 C T CYP4F12 Missense_Mutation p.P498L 0.15 deleterious(0) benign(0.364) TCGA-EE-A2GP-06 19 16000310 16000310 G A CYP4F2 Nonsense_Mutation p.Q281* 0.19 TCGA-EE-A2GP-06 19 16006320 16006320 G A CYP4F2 Silent p.A113A 0.45 TCGA-EE-A2GP-06 19 17994532 17994532 G A SLC5A5 Missense_Mutation p.G429R 0.19 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GP-06 19 2878125 2878125 G A ZNF556 Missense_Mutation p.R390K 0.20 deleterious(0.05) benign(0.173) TCGA-EE-A2GP-06 19 3061173 3061173 T G AES Missense_Mutation p.Q104P 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GP-06 19 33698225 33698225 C T LRP3 Missense_Mutation p.S686L 0.52 tolerated_low_confidence(0.35) benign(0) TCGA-EE-A2GP-06 19 35749940 35749940 G A LSR Missense_Mutation p.E231K 0.53 deleterious(0) possibly_damaging(0.524) TCGA-EE-A2GP-06 19 36243697 36243697 C T LIN37 Intron 0.50 TCGA-EE-A2GP-06 19 36333030 36333030 G A NPHS1 Missense_Mutation p.P887S 0.37 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GP-06 19 37644012 37644012 G A ZNF585A Silent p.I208I 0.53 TCGA-EE-A2GP-06 19 38779791 38779791 G A SPINT2 Silent p.Q117Q 0.23 TCGA-EE-A2GP-06 19 39421394 39421394 G A SARS2 5'UTR 0.46 TCGA-EE-A2GP-06 19 4024107 4024107 C T PIAS4 Silent p.I176I 0.13 TCGA-EE-A2GP-06 19 40364436 40364436 C T FCGBP Splice_Site p.X4736_splice 0.23 TCGA-EE-A2GP-06 19 40886607 40886607 C T HIPK4 Missense_Mutation p.D431N 0.47 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-EE-A2GP-06 19 41822684 41822684 C T CCDC97 Missense_Mutation p.R148C 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GP-06 19 44501512 44501512 C T ZNF155 Silent p.D512D 0.40 TCGA-EE-A2GP-06 19 4510580 4510580 C T PLIN4 Missense_Mutation p.R1117K 0.48 tolerated(1) benign(0.002) TCGA-EE-A2GP-06 19 4538414 4538414 G A LRG1 Silent p.D194D 0.27 TCGA-EE-A2GP-06 19 45762272 45762272 C T MARK4 Missense_Mutation p.S26F 0.46 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GP-06 19 46376133 46376133 G A FOXA3 Silent p.G290G 0.40 TCGA-EE-A2GP-06 19 48967565 48967565 C T KCNJ14 Missense_Mutation p.A281V 0.60 tolerated(0.09) benign(0.3) TCGA-EE-A2GP-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.18 TCGA-EE-A2GP-06 19 50957403 50957403 G A MYBPC2 Missense_Mutation p.E626K 0.42 deleterious(0.01) possibly_damaging(0.858) TCGA-EE-A2GP-06 19 51220099 51220099 G A SHANK1 Silent p.S26S 0.31 TCGA-EE-A2GP-06 19 51995021 51995021 G A SIGLEC12 Silent p.A554A 0.22 TCGA-EE-A2GP-06 19 53270003 53270003 C T ZNF600 Missense_Mutation p.D336N 0.21 deleterious(0.01) possibly_damaging(0.454) TCGA-EE-A2GP-06 19 53343228 53343228 T C ZNF468 3'UTR 0.44 TCGA-EE-A2GP-06 19 53856127 53856127 C T ZNF845 Silent p.S733S 0.29 TCGA-EE-A2GP-06 19 54214303 54214303 G A MIR524 RNA 0.27 TCGA-EE-A2GP-06 19 54744939 54744939 C T LILRA6 Silent p.L241L 0.33 TCGA-EE-A2GP-06 19 54783502 54783502 C T LILRB2 Missense_Mutation p.G119E 0.37 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2GP-06 19 55049216 55049216 G A KIR3DX1 Silent p.Q327Q 0.48 TCGA-EE-A2GP-06 19 55086387 55086387 C T LILRA2 Missense_Mutation p.S181F 0.48 tolerated(0.05) possibly_damaging(0.698) TCGA-EE-A2GP-06 19 56424469 56424469 C T NLRP13 Silent p.G238G 0.39 TCGA-EE-A2GP-06 19 56467104 56467104 C T NLRP8 Silent p.F560F 0.35 TCGA-EE-A2GP-06 19 57175432 57175432 G A ZNF835 Nonsense_Mutation p.Q379* 0.46 TCGA-EE-A2GP-06 19 58319784 58319784 A C ZNF552 Missense_Mutation p.L283R 0.25 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GP-06 19 58601475 58601475 C T ZSCAN18 Missense_Mutation p.E110K 0.33 tolerated(0.23) benign(0.194) TCGA-EE-A2GP-06 19 6664761 6664761 G A TNFSF14 3'UTR 0.33 TCGA-EE-A2GP-06 19 7523559 7523559 C T ARHGEF18 Silent p.I593I 0.25 TCGA-EE-A2GP-06 19 7712250 7712250 G C STXBP2 Missense_Mutation p.G517R 0.08 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GP-06 19 7743386 7743386 C T C19orf59 Missense_Mutation p.S128F 0.19 tolerated(0.31) benign(0.005) TCGA-EE-A2GP-06 19 855770 855770 G A ELANE Silent p.R191R 0.22 TCGA-EE-A2GP-06 19 8842040 8842040 C T OR2Z1 Missense_Mutation p.S217F 0.45 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GP-06 19 9020060 9020060 C T MUC16 Missense_Mutation p.E12479K 0.21 possibly_damaging(0.491) TCGA-EE-A2GP-06 19 9045944 9045944 G A MUC16 Missense_Mutation p.S11896F 0.44 benign(0.101) TCGA-EE-A2GP-06 19 9050170 9050170 C T MUC16 Silent p.K10487K 0.51 TCGA-EE-A2GP-06 19 9089011 9089011 G A MUC16 Missense_Mutation p.A935V 0.25 unknown(0) TCGA-EE-A2GP-06 1 10195090 10195090 C T UBE4B Silent p.F690F 0.44 TCGA-EE-A2GP-06 1 103428226 103428226 C T COL11A1 Missense_Mutation p.G1003R 0.31 unknown(0) TCGA-EE-A2GP-06 1 110086489 110086489 G A GPR61 Missense_Mutation p.G282E 0.50 deleterious(0) probably_damaging(0.918) TCGA-EE-A2GP-06 1 11009732 11009732 C T C1orf127 Silent p.Q413Q 0.37 TCGA-EE-A2GP-06 1 11015049 11015049 G A C1orf127 Nonsense_Mutation p.Q325* 0.41 TCGA-EE-A2GP-06 1 110302423 110302423 G A EPS8L3 Silent p.V44V 0.33 TCGA-EE-A2GP-06 1 111992045 111992045 G A ATP5F1 5'UTR 0.28 TCGA-EE-A2GP-06 1 112043112 112043112 G A ADORA3 Intron 0.24 TCGA-EE-A2GP-06 1 112318868 112318868 C T KCND3 Missense_Mutation p.G600E 0.48 tolerated_low_confidence(0.21) probably_damaging(0.931) TCGA-EE-A2GP-06 1 114524200 114524200 C T OLFML3 Missense_Mutation p.R344C 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.59 tolerated(0.06) benign(0.006) TCGA-EE-A2GP-06 1 11579922 11579922 C T PTCHD2 Missense_Mutation p.R729C 0.41 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2GP-06 1 117311313 117311313 C T CD2 Nonsense_Mutation p.Q322* 0.42 TCGA-EE-A2GP-06 1 117661263 117661263 G T TRIM45 Missense_Mutation p.F205L 0.34 tolerated(0.66) benign(0) TCGA-EE-A2GP-06 1 118574476 118574476 C T SPAG17 Missense_Mutation p.D1150N 0.26 tolerated(0.74) benign(0.003) TCGA-EE-A2GP-06 1 12907791 12907791 C T HNRNPCL1 Missense_Mutation p.D118N 0.36 tolerated(0.06) benign(0.031) TCGA-EE-A2GP-06 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.08 tolerated(0.05) benign(0.028) TCGA-EE-A2GP-06 1 12979896 12979896 C T PRAMEF7 Missense_Mutation p.S363F 0.25 benign(0.134) TCGA-EE-A2GP-06 1 13001263 13001263 C T PRAMEF6 Silent p.R140R 0.10 TCGA-EE-A2GP-06 1 145273243 145273243 C T NOTCH2NL Missense_Mutation p.R33C 0.14 tolerated(0.16) probably_damaging(0.918) TCGA-EE-A2GP-06 1 152191326 152191326 C T HRNR Missense_Mutation p.G927S 0.21 unknown(0) TCGA-EE-A2GP-06 1 152323637 152323637 C T FLG2 Missense_Mutation p.G2209R 0.45 benign(0.087) TCGA-EE-A2GP-06 1 152785047 152785047 C T LCE1B Missense_Mutation p.S42F 0.50 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GP-06 1 153177315 153177315 C T LELP1 Silent p.F44F 0.51 TCGA-EE-A2GP-06 1 15386767 15386767 C T KAZN Missense_Mutation p.S339F 0.37 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2GP-06 1 154919211 154919211 G A PBXIP1 Silent p.L313L 0.22 TCGA-EE-A2GP-06 1 155920151 155920151 G A ARHGEF2 Silent p.D942D 0.53 TCGA-EE-A2GP-06 1 155920178 155920178 G A ARHGEF2 Silent p.P933P 0.61 TCGA-EE-A2GP-06 1 155920179 155920179 G A ARHGEF2 Missense_Mutation p.P933L 0.61 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2GP-06 1 156351864 156351864 C T RHBG Silent p.I328I 0.18 TCGA-EE-A2GP-06 1 157494247 157494247 G A FCRL5 Silent p.S687S 0.21 TCGA-EE-A2GP-06 1 157516930 157516930 C T FCRL5 Missense_Mutation p.G37E 0.22 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A2GP-06 1 157516931 157516931 C T FCRL5 Missense_Mutation p.G37R 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 1 158325195 158325195 C T CD1E Missense_Mutation p.S154F 0.16 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2GP-06 1 158368849 158368849 G A OR10T2 Silent p.I136I 0.15 TCGA-EE-A2GP-06 1 158390112 158390112 G T OR10K2 Missense_Mutation p.A182D 0.56 tolerated(0.2) benign(0.063) TCGA-EE-A2GP-06 1 158549165 158549165 C T OR10X1 Silent p.E175E 0.21 TCGA-EE-A2GP-06 1 159785556 159785556 C T FCRL6 3'Flank 0.50 TCGA-EE-A2GP-06 1 159827553 159827553 G T VSIG8 Missense_Mutation p.H212N 0.50 tolerated(0.25) probably_damaging(0.975) TCGA-EE-A2GP-06 1 160523163 160523163 C T CD84 Silent p.R255R 0.35 TCGA-EE-A2GP-06 1 160549207 160549207 C T CD84 Nonsense_Mutation p.W7* 0.41 TCGA-EE-A2GP-06 1 164776781 164776781 G A PBX1 Missense_Mutation p.R235Q 0.16 deleterious(0) benign(0.401) TCGA-EE-A2GP-06 1 164776782 164776782 G T PBX1 Silent p.R235R 0.16 TCGA-EE-A2GP-06 1 165175244 165175244 C T LMX1A Missense_Mutation p.G282E 0.22 tolerated(0.94) benign(0.356) TCGA-EE-A2GP-06 1 167960470 167960470 C T DCAF6 Missense_Mutation p.A194V 0.22 tolerated(0.74) probably_damaging(0.987) TCGA-EE-A2GP-06 1 168511246 168511246 G A XCL2 Missense_Mutation p.S54F 0.19 tolerated(0.14) benign(0.063) TCGA-EE-A2GP-06 1 173628433 173628433 G A ANKRD45 Missense_Mutation p.P42L 0.46 tolerated(0.12) benign(0.312) TCGA-EE-A2GP-06 1 175325460 175325460 G A TNR Missense_Mutation p.S1038F 0.43 deleterious(0) benign(0.304) TCGA-EE-A2GP-06 1 17698834 17698834 G A PADI6 RNA 0.42 TCGA-EE-A2GP-06 1 179322795 179322795 C T SOAT1 3'UTR 0.43 TCGA-EE-A2GP-06 1 181705457 181705457 G A CACNA1E Silent p.E1103E 0.56 TCGA-EE-A2GP-06 1 181741343 181741343 C T CACNA1E Silent p.S1705S 0.45 TCGA-EE-A2GP-06 1 181765951 181765951 C T CACNA1E Missense_Mutation p.S2119F 0.38 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GP-06 1 186072702 186072702 C T HMCN1 Missense_Mutation p.P3558S 0.46 probably_damaging(0.998) TCGA-EE-A2GP-06 1 192153442 192153442 C T RGS18 Missense_Mutation p.H156Y 0.42 deleterious(0.03) benign(0.014) TCGA-EE-A2GP-06 1 196694292 196694292 C T CFH Missense_Mutation p.P580S 0.19 tolerated(0.37) benign(0.014) TCGA-EE-A2GP-06 1 197316531 197316531 C T CRB1 Missense_Mutation p.L304F 0.53 tolerated(0.19) benign(0.027) TCGA-EE-A2GP-06 1 200948729 200948729 G A KIF21B Missense_Mutation p.S1365F 0.46 deleterious(0) possibly_damaging(0.762) TCGA-EE-A2GP-06 1 202571092 202571092 C T SYT2 Missense_Mutation p.V243M 0.21 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GP-06 1 203186114 203186114 G A CHIT1 Missense_Mutation p.S435F 0.49 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2GP-06 1 204433251 204433251 G T PIK3C2B Missense_Mutation p.T400N 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2GP-06 1 204518847 204518847 A G MDM4 3'UTR 0.39 TCGA-EE-A2GP-06 1 205496942 205496942 C T CDK18 Silent p.L280L 0.48 TCGA-EE-A2GP-06 1 205496943 205496943 C T CDK18 Missense_Mutation p.R281W 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 1 207651280 207651280 G A CR2 Missense_Mutation p.E985K 0.22 tolerated(0.19) possibly_damaging(0.688) TCGA-EE-A2GP-06 1 208234099 208234099 G A PLXNA2 Silent p.I890I 0.46 TCGA-EE-A2GP-06 1 212274371 212274371 C T DTL Missense_Mutation p.P680L 0.22 deleterious(0.03) benign(0.326) TCGA-EE-A2GP-06 1 216680237 216680237 C T ESRRG 3'UTR 0.40 TCGA-EE-A2GP-06 1 22310316 22310319 TCTC - CELA3B Frame_Shift_Del p.L165Ifs*33 0.39 TCGA-EE-A2GP-06 1 223567444 223567444 C T C1orf65 Silent p.A209A 0.35 TCGA-EE-A2GP-06 1 223983600 223983600 G A TP53BP2 Missense_Mutation p.P881S 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GP-06 1 226075178 226075178 G A LEFTY1 Missense_Mutation p.R220C 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2GP-06 1 226128883 226128883 C T LEFTY2 5'UTR 0.27 TCGA-EE-A2GP-06 1 232649950 232649950 G A SIPA1L2 Missense_Mutation p.S379F 0.22 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A2GP-06 1 233363099 233363099 C T PCNXL2 Missense_Mutation p.E793K 0.48 deleterious(0.04) benign(0.082) TCGA-EE-A2GP-06 1 235338551 235338551 G A ARID4B Silent p.L1204L 0.24 TCGA-EE-A2GP-06 1 236912519 236912519 G A ACTN2 Silent p.E537E 0.47 TCGA-EE-A2GP-06 1 23850887 23850887 G A E2F2 Missense_Mutation p.P116S 0.32 tolerated(0.16) benign(0.063) TCGA-EE-A2GP-06 1 240072012 240072012 C T CHRM3 Missense_Mutation p.P421S 0.17 tolerated(0.75) benign(0) TCGA-EE-A2GP-06 1 24417294 24417294 C T MYOM3 Silent p.R475R 0.32 TCGA-EE-A2GP-06 1 248058924 248058924 C T OR2W3 Silent p.F12F 0.36 TCGA-EE-A2GP-06 1 248512563 248512563 C T OR14C36 Nonsense_Mutation p.Q163* 0.25 TCGA-EE-A2GP-06 1 248685610 248685610 C T OR2G6 Silent p.I221I 0.25 TCGA-EE-A2GP-06 1 26349709 26349709 G C EXTL1 Missense_Mutation p.R191P 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 1 32688000 32688000 C T EIF3I 5'UTR 0.36 TCGA-EE-A2GP-06 1 35370855 35370855 C T DLGAP3 Missense_Mutation p.E44K 0.34 deleterious(0.01) benign(0.039) TCGA-EE-A2GP-06 1 39879020 39879020 C T KIAA0754 Missense_Mutation p.S892F 0.53 benign(0.246) TCGA-EE-A2GP-06 1 42880226 42880226 G A RIMKLA Missense_Mutation p.G253S 0.43 deleterious(0.01) possibly_damaging(0.692) TCGA-EE-A2GP-06 1 43108203 43108203 G A CCDC30 Silent p.R566R 0.32 TCGA-EE-A2GP-06 1 43855557 43855557 C T SZT2 5'Flank 0.45 TCGA-EE-A2GP-06 1 44456254 44456254 C T B4GALT2 3'Flank 0.28 TCGA-EE-A2GP-06 1 44476402 44476402 C T SLC6A9 Silent p.G134G 0.22 TCGA-EE-A2GP-06 1 46509440 46509440 G A PIK3R3 Missense_Mutation p.H431Y 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GP-06 1 47351253 47351253 G A CYP4Z2P Intron 0.36 TCGA-EE-A2GP-06 1 54060487 54060487 C T GLIS1 Missense_Mutation p.S30N 0.29 tolerated_low_confidence(0.09) benign(0.031) TCGA-EE-A2GP-06 1 54417927 54417927 C T LRRC42 Silent p.S85S 0.51 TCGA-EE-A2GP-06 1 55075158 55075158 G A FAM151A Missense_Mutation p.A514V 0.28 tolerated(0.06) possibly_damaging(0.725) TCGA-EE-A2GP-06 1 57422542 57422542 C T C8B Silent p.G97G 0.33 TCGA-EE-A2GP-06 1 6203900 6203900 C T CHD5 Missense_Mutation p.D676N 0.45 tolerated(0.09) benign(0.004) TCGA-EE-A2GP-06 1 64095185 64095185 C T PGM1 Silent p.I130I 0.53 TCGA-EE-A2GP-06 1 6488420 6488420 C T ESPN Silent p.H143H 0.41 TCGA-EE-A2GP-06 1 75037536 75037536 C T C1orf173 Silent p.R1286R 0.25 TCGA-EE-A2GP-06 1 75037580 75037580 C T C1orf173 Missense_Mutation p.E1272K 0.28 tolerated(0.08) benign(0.165) TCGA-EE-A2GP-06 1 7724953 7724953 C T CAMTA1 Silent p.S782S 0.32 TCGA-EE-A2GP-06 1 78001663 78001663 C T AK5 Silent p.A520A 0.37 TCGA-EE-A2GP-06 1 92182152 92182152 G A TGFBR3 Silent p.S560S 0.27 TCGA-EE-A2GP-06 1 92495805 92495805 G A EPHX4 Missense_Mutation p.E57K 0.22 tolerated(0.8) benign(0.012) TCGA-EE-A2GP-06 1 93687259 93687259 C T CCDC18 Missense_Mutation p.H739Y 0.26 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A2GP-06 1 94650952 94650952 C T ARHGAP29 Silent p.T622T 0.33 TCGA-EE-A2GP-06 1 97547948 97547948 C T DPYD Missense_Mutation p.D949N 0.54 tolerated(0.42) benign(0.006) TCGA-EE-A2GP-06 20 17705686 17705686 C T BANF2 Missense_Mutation p.P13S 0.12 tolerated(0.12) possibly_damaging(0.465) TCGA-EE-A2GP-06 20 2083990 2083990 C T STK35 Silent p.L291L 0.13 TCGA-EE-A2GP-06 20 23966394 23966394 G A GGTLC1 Silent p.F147F 0.17 TCGA-EE-A2GP-06 20 24523803 24523803 G A SYNDIG1 Missense_Mutation p.G24S 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A2GP-06 20 2591212 2591212 C T TMC2 Missense_Mutation p.L521F 0.19 deleterious(0.05) probably_damaging(0.979) TCGA-EE-A2GP-06 20 2846928 2846928 C T VPS16 Missense_Mutation p.P781L 0.27 tolerated(0.26) benign(0.091) TCGA-EE-A2GP-06 20 3002778 3002778 C T PTPRA Missense_Mutation p.P414S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 20 34092124 34092124 C T CEP250 Missense_Mutation p.A1976V 0.25 benign(0.041) TCGA-EE-A2GP-06 20 34519238 34519238 G T PHF20 Silent p.L724L 0.21 TCGA-EE-A2GP-06 20 3652925 3652925 G A ADAM33 Missense_Mutation p.P485S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 20 42194932 42194932 G A SGK2 5'UTR 0.28 TCGA-EE-A2GP-06 20 42680182 42680182 C T TOX2 Silent p.F216F 0.15 TCGA-EE-A2GP-06 20 43851660 43851660 G A SEMG2 Missense_Mutation p.E463K 0.23 tolerated(0.05) possibly_damaging(0.621) TCGA-EE-A2GP-06 20 48273211 48273211 G T B4GALT5 Silent p.A48A 0.64 TCGA-EE-A2GP-06 20 49626572 49626572 G A KCNG1 Missense_Mutation p.L102F 0.39 deleterious(0.03) possibly_damaging(0.87) TCGA-EE-A2GP-06 20 54824490 54824490 C T MC3R Silent p.F197F 0.66 TCGA-EE-A2GP-06 20 60856132 60856132 C T OSBPL2 Silent p.T231T 0.24 TCGA-EE-A2GP-06 20 62122033 62122033 C T EEF1A2 Missense_Mutation p.M276I 0.08 deleterious_low_confidence(0.03) benign(0.085) TCGA-EE-A2GP-06 20 62195584 62195584 G A HELZ2 Nonsense_Mutation p.Q1531* 0.13 TCGA-EE-A2GP-06 20 62196988 62196988 G A HELZ2 Missense_Mutation p.P1063S 0.65 tolerated(0.51) possibly_damaging(0.662) TCGA-EE-A2GP-06 20 9438076 9438076 C T PLCB4 Silent p.L992L 0.09 TCGA-EE-A2GP-06 21 10916422 10916422 G A TPTE Silent p.L408L 0.12 TCGA-EE-A2GP-06 21 10916423 10916423 A T TPTE Missense_Mutation p.L408H 0.13 deleterious(0) probably_damaging(0.95) TCGA-EE-A2GP-06 21 11021192 11021192 G A BAGE2 RNA 0.08 TCGA-EE-A2GP-06 21 27062217 27062217 C T JAM2 Missense_Mutation p.S58F 0.51 deleterious(0.01) possibly_damaging(0.8) TCGA-EE-A2GP-06 21 27840811 27840811 G A CYYR1 3'UTR 0.13 TCGA-EE-A2GP-06 21 31797817 31797817 A C KRTAP13-3 Silent p.P138P 0.26 TCGA-EE-A2GP-06 21 37408283 37408283 G A SETD4 3'UTR 0.24 TCGA-EE-A2GP-06 21 38997535 38997535 C T KCNJ6 Missense_Mutation p.E400K 0.22 tolerated(0.28) benign(0.012) TCGA-EE-A2GP-06 21 42762624 42762624 A G MX2 Missense_Mutation p.T289A 0.28 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2GP-06 21 46309893 46309893 C A ITGB2 Missense_Mutation p.G553W 0.47 deleterious(0) benign(0.004) TCGA-EE-A2GP-06 21 46309894 46309894 C T ITGB2 Silent p.P552P 0.45 TCGA-EE-A2GP-06 22 18069942 18069942 C T SLC25A18 Silent p.S150S 0.31 TCGA-EE-A2GP-06 22 19055731 19055731 G C DGCR2 Silent p.T70T 0.49 TCGA-EE-A2GP-06 22 19839544 19839544 G A C22orf29 Missense_Mutation p.P81S 0.32 tolerated(0.53) benign(0.125) TCGA-EE-A2GP-06 22 25251579 25251579 G A SGSM1 Missense_Mutation p.V245M 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GP-06 22 26906129 26906129 G A TFIP11 Missense_Mutation p.P37L 0.69 tolerated(0.38) possibly_damaging(0.737) TCGA-EE-A2GP-06 22 30700559 30700559 G A TBC1D10A Silent p.L97L 0.66 TCGA-EE-A2GP-06 22 32217491 32217491 C T DEPDC5 Missense_Mutation p.P625L 0.57 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GP-06 22 38313723 38313723 C T MICALL1 Missense_Mutation p.S116L 0.50 tolerated(0.13) benign(0.012) TCGA-EE-A2GP-06 22 39530535 39530535 G A CBX7 Missense_Mutation p.P157S 0.75 tolerated(0.12) possibly_damaging(0.725) TCGA-EE-A2GP-06 22 39631876 39631876 C T PDGFB Missense_Mutation p.D23N 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 22 39631877 39631877 C T PDGFB Silent p.G22G 0.50 TCGA-EE-A2GP-06 22 43924691 43924691 G A EFCAB6 3'UTR 0.69 TCGA-EE-A2GP-06 22 44579272 44579272 G A PARVG Silent p.E21E 0.70 TCGA-EE-A2GP-06 22 47393560 47393560 C T TBC1D22A Nonsense_Mutation p.Q386* 0.68 TCGA-EE-A2GP-06 2 102644862 102644862 G A IL1R2 3'UTR 0.19 TCGA-EE-A2GP-06 2 103300714 103300714 C T SLC9A2 Silent p.L448L 0.18 TCGA-EE-A2GP-06 2 105859346 105859346 A T GPR45 Missense_Mutation p.Q344L 0.15 deleterious(0.01) benign(0.002) TCGA-EE-A2GP-06 2 108499245 108499245 G A RGPD4 Missense_Mutation p.E1728K 0.45 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-EE-A2GP-06 2 1168793 1168793 C T SNTG2 Missense_Mutation p.S172F 0.35 deleterious(0.03) possibly_damaging(0.778) TCGA-EE-A2GP-06 2 119739072 119739072 C T MARCO Missense_Mutation p.P285L 0.39 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A2GP-06 2 120221753 120221753 G A SCTR Silent p.I194I 0.23 TCGA-EE-A2GP-06 2 131521822 131521822 C T AMER3 Missense_Mutation p.P726L 0.47 deleterious(0) possibly_damaging(0.629) TCGA-EE-A2GP-06 2 133539545 133539545 C T NCKAP5 Silent p.T1613T 0.46 TCGA-EE-A2GP-06 2 133543248 133543248 G A NCKAP5 Missense_Mutation p.S379L 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GP-06 2 135711716 135711716 C T CCNT2 Missense_Mutation p.P564L 0.44 tolerated(0.42) benign(0.02) TCGA-EE-A2GP-06 2 138000074 138000074 C T THSD7B Missense_Mutation p.P733L 0.45 tolerated(0.08) benign(0.413) TCGA-EE-A2GP-06 2 138400173 138400173 C T THSD7B Silent p.V1308V 0.18 TCGA-EE-A2GP-06 2 138400174 138400174 C T THSD7B Missense_Mutation p.L1309F 0.18 tolerated(0.06) unknown(0) TCGA-EE-A2GP-06 2 141294269 141294269 G A LRP1B Missense_Mutation p.S2508F 0.16 possibly_damaging(0.788) TCGA-EE-A2GP-06 2 152520314 152520314 C T NEB Silent p.L1837L 0.12 TCGA-EE-A2GP-06 2 153405583 153405583 G A FMNL2 Missense_Mutation p.E111K 0.33 probably_damaging(0.936) TCGA-EE-A2GP-06 2 163133297 163133297 G A IFIH1 Missense_Mutation p.S735F 0.26 tolerated(0.74) benign(0.008) TCGA-EE-A2GP-06 2 163374667 163374667 C T KCNH7 Silent p.R155R 0.51 TCGA-EE-A2GP-06 2 165476206 165476206 C T GRB14 Silent p.R105R 0.56 TCGA-EE-A2GP-06 2 169781241 169781241 G A ABCB11 Missense_Mutation p.R1231W 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 2 169781287 169781287 C T ABCB11 Silent p.Q1215Q 0.37 TCGA-EE-A2GP-06 2 171256824 171256824 G A MYO3B Missense_Mutation p.A640T 0.24 tolerated(0.06) benign(0.395) TCGA-EE-A2GP-06 2 173882199 173882199 C T RAPGEF4 Nonsense_Mutation p.Q659* 0.15 TCGA-EE-A2GP-06 2 179238671 179238671 A G OSBPL6 Missense_Mutation p.S509G 0.05 deleterious(0.04) benign(0.045) TCGA-EE-A2GP-06 2 179395655 179395655 T G TTN Silent p.T35229T 0.23 TCGA-EE-A2GP-06 2 179458328 179458328 C T TTN Missense_Mutation p.V19567M 0.38 TCGA-EE-A2GP-06 2 179498736 179498736 C T TTN Missense_Mutation p.E14164K 0.49 TCGA-EE-A2GP-06 2 179554063 179554063 C T TTN Silent p.R10655R 0.15 TCGA-EE-A2GP-06 2 179582272 179582272 G A TTN Silent p.S8443S 0.48 TCGA-EE-A2GP-06 2 179583624 179583624 G A TTN Silent p.I8101I 0.47 TCGA-EE-A2GP-06 2 179612194 179612194 C T TTN Intron 0.24 TCGA-EE-A2GP-06 2 179615636 179615636 C T TTN Intron 0.16 TCGA-EE-A2GP-06 2 179643678 179643678 C T TTN Silent p.G1377G 0.13 TCGA-EE-A2GP-06 2 186672991 186672991 G A FSIP2 Missense_Mutation p.E6409K 0.26 benign(0.305) TCGA-EE-A2GP-06 2 187693133 187693133 G A ZSWIM2 Missense_Mutation p.P494S 0.40 tolerated(0.22) benign(0.305) TCGA-EE-A2GP-06 2 188225374 188225374 G A CALCRL Silent p.A244A 0.22 TCGA-EE-A2GP-06 2 189599244 189599244 C T DIRC1 3'UTR 0.30 TCGA-EE-A2GP-06 2 189868847 189868847 C T COL3A1 Missense_Mutation p.S934L 0.29 possibly_damaging(0.815) TCGA-EE-A2GP-06 2 189870113 189870113 G A COL3A1 Missense_Mutation p.G990E 0.25 probably_damaging(1) TCGA-EE-A2GP-06 2 192194745 192194745 A C MYO1B Silent p.A112A 0.22 TCGA-EE-A2GP-06 2 196722390 196722390 C A DNAH7 Nonsense_Mutation p.E2709* 0.54 TCGA-EE-A2GP-06 2 196729521 196729521 G A DNAH7 Silent p.I2286I 0.48 TCGA-EE-A2GP-06 2 198949006 198949006 G A PLCL1 Silent p.G255G 0.19 TCGA-EE-A2GP-06 2 200137332 200137332 G A SATB2 Missense_Mutation p.P602S 0.24 tolerated(0.43) benign(0.004) TCGA-EE-A2GP-06 2 200213619 200213619 G A SATB2 Silent p.L326L 0.43 TCGA-EE-A2GP-06 2 215843674 215843674 C T ABCA12 Missense_Mutation p.D1611N 0.18 tolerated(0.27) possibly_damaging(0.861) TCGA-EE-A2GP-06 2 219319462 219319462 T C USP37 3'UTR 0.70 TCGA-EE-A2GP-06 2 219870876 219870876 C T CCDC108 Missense_Mutation p.E1597K 0.24 tolerated(0.32) benign(0.03) TCGA-EE-A2GP-06 2 220115133 220115133 T A TUBA4A Nonsense_Mutation p.K430* 0.24 TCGA-EE-A2GP-06 2 228882345 228882345 C T SPHKAP Nonsense_Mutation p.W1075* 0.51 TCGA-EE-A2GP-06 2 231948295 231948295 C T PSMD1 Silent p.L514L 0.45 TCGA-EE-A2GP-06 2 232160934 232160934 G A ARMC9 Missense_Mutation p.E581K 0.25 tolerated(0.23) possibly_damaging(0.648) TCGA-EE-A2GP-06 2 233350790 233350790 C T ECEL1 Missense_Mutation p.E192K 0.57 tolerated(0.19) benign(0.278) TCGA-EE-A2GP-06 2 234678299 234678299 C T UGT1A10 Intron 0.69 TCGA-EE-A2GP-06 2 234854559 234854559 G A TRPM8 Silent p.L253L 0.39 TCGA-EE-A2GP-06 2 238419296 238419296 T C MLPH Missense_Mutation p.C64R 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 2 241713623 241713623 G A KIF1A Silent p.Y338Y 0.28 TCGA-EE-A2GP-06 2 242189355 242189355 G A HDLBP Silent p.I471I 0.40 TCGA-EE-A2GP-06 2 242758340 242758340 G A NEU4 Missense_Mutation p.G487E 0.52 tolerated(0.47) benign(0.242) TCGA-EE-A2GP-06 2 242758341 242758341 G A NEU4 Silent p.G487G 0.48 TCGA-EE-A2GP-06 2 27263326 27263326 C T TMEM214 Silent p.A635A 0.57 TCGA-EE-A2GP-06 2 28827570 28827570 G A PLB1 Missense_Mutation p.D969N 0.26 tolerated(0.26) possibly_damaging(0.717) TCGA-EE-A2GP-06 2 32889429 32889429 C T TTC27 Missense_Mutation p.H234Y 0.24 tolerated(0.09) benign(0.011) TCGA-EE-A2GP-06 2 44065532 44065532 C T ABCG5 Intron 0.40 TCGA-EE-A2GP-06 2 48848316 48848316 C T STON1-GTF2A1L Missense_Mutation p.T749I 0.56 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A2GP-06 2 63085637 63085637 C T EHBP1 Missense_Mutation p.S244F 0.44 tolerated(0.22) possibly_damaging(0.841) TCGA-EE-A2GP-06 2 70096880 70096880 C T GMCL1 Silent p.F416F 0.32 TCGA-EE-A2GP-06 2 84784977 84784977 G A DNAH6 Missense_Mutation p.G574E 0.50 tolerated(1) benign(0) TCGA-EE-A2GP-06 2 85576630 85576630 G T RETSAT Missense_Mutation p.P292T 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GP-06 2 85577189 85577189 A G RETSAT Missense_Mutation p.V258A 0.20 deleterious(0.02) possibly_damaging(0.78) TCGA-EE-A2GP-06 3 101540295 101540295 C T NXPE3 Missense_Mutation p.L393F 0.38 deleterious(0.01) possibly_damaging(0.86) TCGA-EE-A2GP-06 3 102196359 102196359 G A ZPLD1 Missense_Mutation p.G398E 0.34 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A2GP-06 3 109046826 109046826 C T DPPA4 3'UTR 0.16 TCGA-EE-A2GP-06 3 109049623 109049623 T A DPPA4 Nonsense_Mutation p.K143* 0.38 TCGA-EE-A2GP-06 3 11064053 11064053 G A SLC6A1 Missense_Mutation p.D205N 0.35 tolerated(0.07) benign(0.014) TCGA-EE-A2GP-06 3 120764302 120764302 T G STXBP5L Missense_Mutation p.S130R 0.15 deleterious(0.01) benign(0.397) TCGA-EE-A2GP-06 3 121100155 121100155 C T STXBP5L Missense_Mutation p.S812F 0.33 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2GP-06 3 121411324 121411324 G A GOLGB1 Missense_Mutation p.S2296F 0.36 probably_damaging(0.937) TCGA-EE-A2GP-06 3 121489364 121489364 G A IQCB1 Missense_Mutation p.S542F 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GP-06 3 121980842 121980842 C T CASR Silent p.F320F 0.35 TCGA-EE-A2GP-06 3 122525730 122525733 TCCT - DIRC2 Frame_Shift_Del p.F125Lfs*8 0.37 TCGA-EE-A2GP-06 3 124515313 124515313 C G ITGB5 Missense_Mutation p.E539Q 0.37 tolerated(0.11) probably_damaging(0.98) TCGA-EE-A2GP-06 3 12858878 12858878 C T CAND2 Missense_Mutation p.P816L 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2GP-06 3 128696912 128696912 C T KIAA1257 Missense_Mutation p.E262K 0.30 tolerated(0.14) possibly_damaging(0.575) TCGA-EE-A2GP-06 3 128707654 128707654 G A KIAA1257 Silent p.L124L 0.39 TCGA-EE-A2GP-06 3 130284118 130284118 G A COL6A6 Silent p.K314K 0.37 TCGA-EE-A2GP-06 3 142403191 142403191 C T PLS1 Missense_Mutation p.T281I 0.52 deleterious(0.03) benign(0.323) TCGA-EE-A2GP-06 3 142681139 142681139 G A PAQR9 Missense_Mutation p.S347L 0.39 tolerated(0.75) benign(0) TCGA-EE-A2GP-06 3 143708711 143708711 C T C3orf58 3'UTR 0.43 TCGA-EE-A2GP-06 3 14724232 14724232 C T C3orf20 Silent p.I4I 0.44 TCGA-EE-A2GP-06 3 149629785 149629785 C T RNF13 Missense_Mutation p.P174L 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GP-06 3 150127274 150127274 C T TSC22D2 Missense_Mutation p.S46F 0.34 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GP-06 3 150127275 150127275 C T TSC22D2 Silent p.S46S 0.38 TCGA-EE-A2GP-06 3 151046683 151046683 A C P2RY13 Missense_Mutation p.V54G 0.33 deleterious(0) possibly_damaging(0.707) TCGA-EE-A2GP-06 3 152018127 152018128 - GAGT MBNL1 Frame_Shift_Ins p.I51Sfs*6 0.43 TCGA-EE-A2GP-06 3 164780204 164780204 G A SI Silent p.I325I 0.37 TCGA-EE-A2GP-06 3 164785137 164785137 C T SI Missense_Mutation p.G209D 0.42 tolerated(0.08) benign(0.002) TCGA-EE-A2GP-06 3 16646846 16646846 G A DAZL 5'Flank 0.47 TCGA-EE-A2GP-06 3 168833340 168833340 C T MECOM Missense_Mutation p.D651N 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GP-06 3 170879075 170879075 C T TNIK Missense_Mutation p.D334N 0.30 tolerated(0.17) unknown(0) TCGA-EE-A2GP-06 3 183097194 183097194 G A MCF2L2 Nonsense_Mutation p.R56* 0.40 TCGA-EE-A2GP-06 3 183778263 183778263 C T HTR3C 3'UTR 0.33 TCGA-EE-A2GP-06 3 183906717 183906717 G A ABCF3 Silent p.R306R 0.35 TCGA-EE-A2GP-06 3 184294969 184294969 C T EPHB3 Missense_Mutation p.A451V 0.32 deleterious(0.03) possibly_damaging(0.902) TCGA-EE-A2GP-06 3 185226631 185226631 C T LIPH Missense_Mutation p.E435K 0.40 deleterious(0.05) probably_damaging(0.967) TCGA-EE-A2GP-06 3 19574921 19574921 G A KCNH8 Missense_Mutation p.G885D 0.42 deleterious(0.02) benign(0.193) TCGA-EE-A2GP-06 3 20187898 20187898 C T KAT2B Missense_Mutation p.P699S 0.45 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2GP-06 3 21706440 21706440 G C ZNF385D Missense_Mutation p.P35A 0.36 tolerated(0.23) benign(0.066) TCGA-EE-A2GP-06 3 27759018 27759018 G A EOMES Missense_Mutation p.S535F 0.36 deleterious(0.01) possibly_damaging(0.825) TCGA-EE-A2GP-06 3 33134463 33134463 G T TMPPE Missense_Mutation p.P409T 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GP-06 3 38155851 38155851 G A DLEC1 Missense_Mutation p.E1229K 0.29 tolerated(0.76) benign(0) TCGA-EE-A2GP-06 3 38629054 38629054 C T SCN5A Missense_Mutation p.G758E 0.30 deleterious(0.01) possibly_damaging(0.543) TCGA-EE-A2GP-06 3 38991749 38991749 C T SCN11A Silent p.K35K 0.35 TCGA-EE-A2GP-06 3 44612349 44612349 G A ZKSCAN7 Missense_Mutation p.E583K 0.29 tolerated(0.11) benign(0.029) TCGA-EE-A2GP-06 3 45127545 45127545 T C CDCP1 Missense_Mutation p.N699S 0.36 tolerated(0.5) benign(0.003) TCGA-EE-A2GP-06 3 46062536 46062536 G A XCR1 Missense_Mutation p.L302F 0.32 tolerated(0.14) benign(0.01) TCGA-EE-A2GP-06 3 46399710 46399710 G A CCR2 Missense_Mutation p.R231Q 0.32 tolerated(0.09) benign(0.234) TCGA-EE-A2GP-06 3 46477681 46477681 C T LTF 3'UTR 0.38 TCGA-EE-A2GP-06 3 48266876 48266876 G A CAMP Missense_Mutation p.D162N 0.34 tolerated(0.26) benign(0.093) TCGA-EE-A2GP-06 3 49850926 49850926 C T UBA7 Missense_Mutation p.D71N 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 3 49898415 49898415 G A CAMKV Missense_Mutation p.P200L 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GP-06 3 50404023 50404023 C T CACNA2D2 Missense_Mutation p.E882K 0.39 tolerated(0.25) possibly_damaging(0.646) TCGA-EE-A2GP-06 3 51352508 51352508 C T DOCK3 Silent p.I1117I 0.32 TCGA-EE-A2GP-06 3 51664882 51664882 C T RAD54L2 Missense_Mutation p.H254Y 0.40 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GP-06 3 51967584 51967584 G A RRP9 Missense_Mutation p.R456W 0.46 deleterious(0) possibly_damaging(0.776) TCGA-EE-A2GP-06 3 52394357 52394357 C T DNAH1 Silent p.I1534I 0.27 TCGA-EE-A2GP-06 3 52506374 52506374 C T NISCH Missense_Mutation p.P210L 0.32 tolerated(0.06) benign(0.35) TCGA-EE-A2GP-06 3 52523640 52523640 C T NISCH Silent p.V1134V 0.43 TCGA-EE-A2GP-06 3 52562897 52562897 G A NT5DC2 Missense_Mutation p.L158F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 3 52850926 52850926 C T ITIH4 Silent p.K815K 0.35 TCGA-EE-A2GP-06 3 53381598 53381598 G A DCP1A 5'UTR 0.39 TCGA-EE-A2GP-06 3 54919339 54919339 C T CACNA2D3 Silent p.S648S 0.29 TCGA-EE-A2GP-06 3 9759820 9759820 G A CPNE9 Missense_Mutation p.D347N 0.36 deleterious(0.02) benign(0.34) TCGA-EE-A2GP-06 4 100350697 100350697 G A ADH7 Missense_Mutation p.R58C 0.34 deleterious(0.04) benign(0.043) TCGA-EE-A2GP-06 4 103225507 103225507 G A SLC39A8 Silent p.I269I 0.33 TCGA-EE-A2GP-06 4 111470499 111470499 C T ENPEP Intron 0.39 TCGA-EE-A2GP-06 4 111474477 111474477 G A ENPEP Silent p.L836L 0.41 TCGA-EE-A2GP-06 4 115856476 115856476 C T NDST4 Silent p.Q474Q 0.33 TCGA-EE-A2GP-06 4 128584651 128584651 T C INTU Missense_Mutation p.V295A 0.40 tolerated(1) benign(0.001) TCGA-EE-A2GP-06 4 146823351 146823351 G A ZNF827 Missense_Mutation p.P354S 0.33 tolerated(0.08) benign(0.002) TCGA-EE-A2GP-06 4 148968112 148968112 C T ARHGAP10 Missense_Mutation p.P646L 0.37 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2GP-06 4 158091827 158091827 T A GLRB Missense_Mutation p.F481I 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GP-06 4 158283982 158283982 T A GRIA2 Missense_Mutation p.V813D 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 4 170017524 170017524 A T SH3RF1 3'UTR 0.40 TCGA-EE-A2GP-06 4 170994383 170994383 G A AADAT Silent p.P186P 0.34 TCGA-EE-A2GP-06 4 1746492 1746492 C T TACC3 Missense_Mutation p.A795V 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 4 1746493 1746493 C T TACC3 Silent p.A795A 0.32 TCGA-EE-A2GP-06 4 176594877 176594877 T C GPM6A Missense_Mutation p.Y114C 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2GP-06 4 187084730 187084730 C T FAM149A Missense_Mutation p.S329L 0.21 tolerated(0.25) benign(0.023) TCGA-EE-A2GP-06 4 20620554 20620554 C T SLIT2 Silent p.F1504F 0.34 TCGA-EE-A2GP-06 4 3234954 3234954 C T HTT Missense_Mutation p.P2777L 0.41 probably_damaging(0.918) TCGA-EE-A2GP-06 4 3234955 3234955 C T HTT Silent p.P2777P 0.41 TCGA-EE-A2GP-06 4 39352971 39352971 G A RFC1 Silent p.I43I 0.52 TCGA-EE-A2GP-06 4 46066480 46066480 G A GABRG1 Silent p.S201S 0.45 TCGA-EE-A2GP-06 4 46994906 46994906 G A GABRA4 Silent p.F48F 0.33 TCGA-EE-A2GP-06 4 47538862 47538862 C G ATP10D Missense_Mutation p.L435V 0.32 tolerated(0.16) possibly_damaging(0.681) TCGA-EE-A2GP-06 4 47593286 47593286 C T ATP10D Missense_Mutation p.S1390F 0.40 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A2GP-06 4 47953412 47953412 G A CNGA1 Missense_Mutation p.S134F 0.32 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-EE-A2GP-06 4 48990672 48990672 G A CWH43 Silent p.R74R 0.24 TCGA-EE-A2GP-06 4 69093715 69093715 C T TMPRSS11B Missense_Mutation p.D389N 0.33 tolerated(0.08) benign(0.027) TCGA-EE-A2GP-06 4 7042985 7042985 C T CCDC96 3'UTR 0.31 TCGA-EE-A2GP-06 4 70713469 70713469 C T SULT1E1 Missense_Mutation p.E180K 0.39 tolerated(0.25) benign(0.202) TCGA-EE-A2GP-06 4 70721127 70721127 C T SULT1E1 Missense_Mutation p.E55K 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2GP-06 4 77941743 77941743 C T SEPT11 Silent p.T291T 0.42 TCGA-EE-A2GP-06 4 79808430 79808430 C A BMP2K Missense_Mutation p.S685Y 0.09 deleterious_low_confidence(0) benign(0.184) TCGA-EE-A2GP-06 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.28 tolerated(0.18) possibly_damaging(0.643) TCGA-EE-A2GP-06 4 84227368 84227368 G A HPSE Silent p.F398F 0.35 TCGA-EE-A2GP-06 4 84516095 84516095 G A AGPAT9 Missense_Mutation p.R279Q 0.45 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2GP-06 4 88084715 88084715 G A KLHL8 Nonsense_Mutation p.R607* 0.39 TCGA-EE-A2GP-06 4 88414772 88414772 C T SPARCL1 Missense_Mutation p.E394K 0.32 deleterious(0.04) possibly_damaging(0.884) TCGA-EE-A2GP-06 4 88723662 88723662 G A IBSP Missense_Mutation p.M19I 0.37 tolerated(0.1) benign(0.038) TCGA-EE-A2GP-06 4 94006369 94006369 C T GRID2 Silent p.I156I 0.31 TCGA-EE-A2GP-06 4 94436462 94436462 C T GRID2 Missense_Mutation p.P698L 0.48 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2GP-06 4 949636 949636 G A TMEM175 Missense_Mutation p.G267E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 4 96124094 96124094 C T UNC5C Missense_Mutation p.E642K 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GP-06 5 102611805 102611805 T C C5orf30 Missense_Mutation p.V62A 0.45 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EE-A2GP-06 5 11236868 11236868 C T CTNND2 Missense_Mutation p.V566I 0.14 tolerated(0.07) possibly_damaging(0.587) TCGA-EE-A2GP-06 5 115339027 115339027 G A AQPEP Missense_Mutation p.D663N 0.13 tolerated(0.08) probably_damaging(0.936) TCGA-EE-A2GP-06 5 126145890 126145891 - G LMNB1 Frame_Shift_Ins p.K222Efs*3 0.29 TCGA-EE-A2GP-06 5 127730852 127730852 G A FBN2 Silent p.I398I 0.51 TCGA-EE-A2GP-06 5 132158506 132158506 G A SHROOM1 Silent p.F847F 0.28 TCGA-EE-A2GP-06 5 137045464 137045464 G A KLHL3 Silent p.S72S 0.22 TCGA-EE-A2GP-06 5 13737548 13737548 C T DNAH5 Silent p.R3756R 0.60 TCGA-EE-A2GP-06 5 137500047 137500047 G A BRD8 Missense_Mutation p.P596L 0.38 tolerated(0.33) benign(0.001) TCGA-EE-A2GP-06 5 13862717 13862717 G A DNAH5 Missense_Mutation p.S1579L 0.20 possibly_damaging(0.651) TCGA-EE-A2GP-06 5 140073847 140073847 C T HARS2 Silent p.S127S 0.55 TCGA-EE-A2GP-06 5 140187258 140187258 C T PCDHA4 Silent p.I162I 0.17 TCGA-EE-A2GP-06 5 140262086 140262086 A T PCDHA13 Missense_Mutation p.N78I 0.22 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A2GP-06 5 140348500 140348500 T A PCDHAC2 Missense_Mutation p.F717I 0.21 deleterious(0.05) probably_damaging(0.942) TCGA-EE-A2GP-06 5 140502682 140502682 C T PCDHB4 Nonsense_Mutation p.R368* 0.29 TCGA-EE-A2GP-06 5 140531413 140531413 C T PCDHB6 Silent p.F525F 0.26 TCGA-EE-A2GP-06 5 140589324 140589324 C T PCDHB12 Missense_Mutation p.S282F 0.49 tolerated_low_confidence(1) benign(0.06) TCGA-EE-A2GP-06 5 140595640 140595640 G A PCDHB13 Missense_Mutation p.E649K 0.25 deleterious_low_confidence(0.01) benign(0.219) TCGA-EE-A2GP-06 5 140720598 140720598 C T PCDHGA2 Missense_Mutation p.S687L 0.27 deleterious_low_confidence(0.01) benign(0.117) TCGA-EE-A2GP-06 5 140735431 140735431 C T PCDHGA4 Missense_Mutation p.R222C 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2GP-06 5 140768288 140768288 C T PCDHGB4 Silent p.F279F 0.22 TCGA-EE-A2GP-06 5 146030179 146030179 C T PPP2R2B Missense_Mutation p.E189K 0.17 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A2GP-06 5 149226926 149226926 G A PPARGC1B Intron 0.36 TCGA-EE-A2GP-06 5 153056646 153056646 G A GRIA1 Silent p.G328G 0.56 TCGA-EE-A2GP-06 5 156592849 156592849 G A FAM71B Missense_Mutation p.R111C 0.52 deleterious(0.02) benign(0.026) TCGA-EE-A2GP-06 5 15928474 15928474 C T FBXL7 Silent p.D201D 0.22 TCGA-EE-A2GP-06 5 168620509 168620509 G A SLIT3 Silent p.F129F 0.50 TCGA-EE-A2GP-06 5 173036301 173036301 C T BOD1 Missense_Mutation p.A167T 0.36 deleterious(0.01) benign(0.05) TCGA-EE-A2GP-06 5 175763763 175763763 T A SIMC1 Missense_Mutation p.C304S 0.26 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2GP-06 5 176332391 176332391 G A UIMC1 Silent p.S684S 0.45 TCGA-EE-A2GP-06 5 19520765 19520765 C T CDH18 Splice_Site p.X504_splice 0.48 TCGA-EE-A2GP-06 5 35065428 35065428 C T PRLR Silent p.K544K 0.47 TCGA-EE-A2GP-06 5 35763793 35763793 G A SPEF2 Missense_Mutation p.V1264I 0.51 tolerated(1) benign(0.002) TCGA-EE-A2GP-06 5 36117840 36117840 G A LMBRD2 Silent p.I433I 0.44 TCGA-EE-A2GP-06 5 434306 434306 C T AHRR Missense_Mutation p.P506L 0.55 tolerated(0.64) benign(0.397) TCGA-EE-A2GP-06 5 5146324 5146324 G A ADAMTS16 Missense_Mutation p.R86K 0.26 tolerated(0.84) benign(0.009) TCGA-EE-A2GP-06 5 68715618 68715618 C T MARVELD2 Missense_Mutation p.P136S 0.18 tolerated(0.21) probably_damaging(0.928) TCGA-EE-A2GP-06 5 79025595 79025595 C T CMYA5 Missense_Mutation p.S336F 0.30 possibly_damaging(0.831) TCGA-EE-A2GP-06 5 80409725 80409725 G A RASGRF2 Missense_Mutation p.R819Q 0.31 tolerated_low_confidence(0.74) benign(0.033) TCGA-EE-A2GP-06 5 89924493 89924493 G A GPR98 Silent p.P451P 0.37 TCGA-EE-A2GP-06 5 94863846 94863846 G A TTC37 Silent p.I335I 0.47 TCGA-EE-A2GP-06 6 106696051 106696051 G A ATG5 Missense_Mutation p.R183C 0.57 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2GP-06 6 111694991 111694991 C T REV3L Missense_Mutation p.G1523R 0.74 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GP-06 6 116784550 116784550 G A FAM26F Nonsense_Mutation p.W210* 0.57 TCGA-EE-A2GP-06 6 11778949 11778949 C T ADTRP Missense_Mutation p.S15N 0.36 tolerated(0.54) benign(0.017) TCGA-EE-A2GP-06 6 119297154 119297154 C T FAM184A Silent p.R837R 0.59 TCGA-EE-A2GP-06 6 12124989 12124989 C T HIVEP1 Missense_Mutation p.S1654F 0.29 deleterious(0) possibly_damaging(0.77) TCGA-EE-A2GP-06 6 131992443 131992443 C T ENPP3 Silent p.F206F 0.51 TCGA-EE-A2GP-06 6 133827283 133827283 G A EYA4 Missense_Mutation p.E411K 0.58 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GP-06 6 136589407 136589407 G A BCLAF1 Nonsense_Mutation p.R764* 0.05 TCGA-EE-A2GP-06 6 13802488 13802488 G A MCUR1 Missense_Mutation p.T209I 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A2GP-06 6 139564218 139564218 C T TXLNB Silent p.V500V 0.59 TCGA-EE-A2GP-06 6 160913983 160913983 G A LPAL2 RNA 0.67 TCGA-EE-A2GP-06 6 165715499 165715499 C T C6orf118 Silent p.R104R 0.62 TCGA-EE-A2GP-06 6 25845740 25845740 G A SLC17A3 Missense_Mutation p.P456L 0.43 tolerated(0.1) benign(0.013) TCGA-EE-A2GP-06 6 28365888 28365888 G T ZSCAN12 Missense_Mutation p.P99T 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 6 29080495 29080495 C T OR2J3 Silent p.F276F 0.48 TCGA-EE-A2GP-06 6 29407862 29407862 G A OR10C1 Missense_Mutation p.G24S 0.83 tolerated(0.42) benign(0.001) TCGA-EE-A2GP-06 6 30955194 30955194 C T MUC21 Silent p.S414S 0.41 TCGA-EE-A2GP-06 6 31694957 31694957 C T DDAH2 3'UTR 0.32 TCGA-EE-A2GP-06 6 33766901 33766901 T A MLN Missense_Mutation p.E72V 0.46 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2GP-06 6 36196801 36196801 C T BRPF3 Silent p.F1134F 0.35 TCGA-EE-A2GP-06 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.33 TCGA-EE-A2GP-06 6 38890939 38890939 G A DNAH8 Missense_Mutation p.E3373K 0.37 benign(0.034) TCGA-EE-A2GP-06 6 39024187 39024187 C T GLP1R Silent p.S31S 0.31 TCGA-EE-A2GP-06 6 39163723 39163723 C T KCNK5 Missense_Mutation p.G76E 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 6 41165891 41165891 C T TREML2 Missense_Mutation p.G111E 0.33 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A2GP-06 6 42892001 42892001 G A PTCRA Silent p.E138E 0.26 TCGA-EE-A2GP-06 6 42985300 42985300 C T KLHDC3 Silent p.I66I 0.86 TCGA-EE-A2GP-06 6 43193590 43193590 C T DNPH1 Missense_Mutation p.D136N 0.34 tolerated(0.24) benign(0.025) TCGA-EE-A2GP-06 6 43274219 43274219 G A CRIP3 Missense_Mutation p.S122L 0.31 tolerated(0.06) benign(0.009) TCGA-EE-A2GP-06 6 46677110 46677110 C T PLA2G7 Missense_Mutation p.G275S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 6 55142266 55142266 C T HCRTR2 Missense_Mutation p.S284F 0.65 tolerated(0.14) benign(0.23) TCGA-EE-A2GP-06 6 70070788 70070788 G A BAI3 Missense_Mutation p.R1208Q 0.47 deleterious(0.04) benign(0.127) TCGA-EE-A2GP-06 6 70926736 70926736 C T COL9A1 Missense_Mutation p.R877Q 0.61 benign(0.121) TCGA-EE-A2GP-06 6 70944589 70944589 G A COL9A1 Missense_Mutation p.P723S 0.74 possibly_damaging(0.674) TCGA-EE-A2GP-06 6 7582885 7582885 G A DSP Missense_Mutation p.R1797K 0.33 probably_damaging(0.977) TCGA-EE-A2GP-06 6 84292025 84292025 G A SNAP91 Nonsense_Mutation p.Q689* 0.62 TCGA-EE-A2GP-06 6 84368726 84368726 C T SNAP91 Missense_Mutation p.E180K 0.93 deleterious(0.04) unknown(0) TCGA-EE-A2GP-06 6 93964398 93964398 T A EPHA7 Silent p.G833G 0.76 TCGA-EE-A2GP-06 7 100179448 100179448 G A LRCH4 Silent p.L184L 0.36 TCGA-EE-A2GP-06 7 100349677 100349677 C T ZAN Missense_Mutation p.S650F 0.37 benign(0.02) TCGA-EE-A2GP-06 7 100678451 100678451 A C MUC17 Missense_Mutation p.T1252P 0.41 unknown(0) TCGA-EE-A2GP-06 7 100732537 100732537 C T TRIM56 Silent p.F648F 0.35 TCGA-EE-A2GP-06 7 103029843 103029843 T C SLC26A5 Missense_Mutation p.N447S 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GP-06 7 113519169 113519169 C T PPP1R3A Missense_Mutation p.E660K 0.31 tolerated(0.17) benign(0.232) TCGA-EE-A2GP-06 7 11676191 11676191 G A THSD7A Silent p.I196I 0.34 TCGA-EE-A2GP-06 7 116918161 116918161 C T WNT2 3'UTR 0.44 TCGA-EE-A2GP-06 7 117267580 117267580 G A CFTR Missense_Mutation p.R1158Q 0.36 tolerated(0.23) possibly_damaging(0.812) TCGA-EE-A2GP-06 7 120385961 120385961 G A KCND2 Missense_Mutation p.R532Q 0.32 tolerated_low_confidence(0.05) possibly_damaging(0.507) TCGA-EE-A2GP-06 7 120935617 120935617 C T CPED1 Nonsense_Mutation p.R998* 0.32 TCGA-EE-A2GP-06 7 128415809 128415809 G A OPN1SW Silent p.F12F 0.33 TCGA-EE-A2GP-06 7 128478355 128478355 G C FLNC Missense_Mutation p.R361P 0.36 deleterious(0) possibly_damaging(0.695) TCGA-EE-A2GP-06 7 129348999 129348999 C T NRF1 Missense_Mutation p.P231S 0.38 deleterious(0) possibly_damaging(0.644) TCGA-EE-A2GP-06 7 129663458 129663458 G A ZC3HC1 Missense_Mutation p.R376C 0.35 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GP-06 7 131895818 131895818 G A PLXNA4 Missense_Mutation p.P728S 0.31 tolerated(0.05) possibly_damaging(0.907) TCGA-EE-A2GP-06 7 137792208 137792208 C T AKR1D1 Missense_Mutation p.S246L 0.33 deleterious(0.01) benign(0.018) TCGA-EE-A2GP-06 7 138566318 138566318 T C KIAA1549 Missense_Mutation p.S1349G 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 7 141619558 141619558 G A OR9A4 Missense_Mutation p.D295N 0.38 tolerated(0.06) benign(0.12) TCGA-EE-A2GP-06 7 141635671 141635671 C T CLEC5A Silent p.R96R 0.40 TCGA-EE-A2GP-06 7 142239615 142239615 G A TRBV9 Missense_Mutation p.P89S 0.36 tolerated(1) benign(0.001) TCGA-EE-A2GP-06 7 142428803 142428803 C T TRBV28 Nonsense_Mutation p.R55* 0.26 TCGA-EE-A2GP-06 7 142562271 142562271 C T EPHB6 Missense_Mutation p.S238F 0.39 deleterious(0) benign(0.001) TCGA-EE-A2GP-06 7 142625848 142625848 G A TRPV5 Missense_Mutation p.L234F 0.30 tolerated(0.14) benign(0.011) TCGA-EE-A2GP-06 7 142627511 142627511 G A TRPV5 Silent p.S53S 0.34 TCGA-EE-A2GP-06 7 143884382 143884382 C T ARHGEF35 Silent p.K365K 0.69 TCGA-EE-A2GP-06 7 1478590 1478590 G A MICALL2 Missense_Mutation p.P670S 0.35 tolerated(0.1) possibly_damaging(0.666) TCGA-EE-A2GP-06 7 22197493 22197493 C T RAPGEF5 Missense_Mutation p.E360K 0.43 tolerated(0.16) probably_damaging(0.993) TCGA-EE-A2GP-06 7 24663358 24663358 C T MPP6 Silent p.F24F 0.27 TCGA-EE-A2GP-06 7 34192701 34192701 C T BMPER Intron 0.32 TCGA-EE-A2GP-06 7 35009087 35009087 G A DPY19L1 Silent p.F251F 0.14 TCGA-EE-A2GP-06 7 37780595 37780595 G A GPR141 Silent p.Q200Q 0.32 TCGA-EE-A2GP-06 7 42065834 42065834 G A GLI3 Silent p.P402P 0.19 TCGA-EE-A2GP-06 7 44746876 44746876 A T OGDH Silent p.P895P 0.32 TCGA-EE-A2GP-06 7 45717819 45717819 C T ADCY1 Silent p.L619L 0.35 TCGA-EE-A2GP-06 7 48547507 48547507 C T ABCA13 Silent p.I4462I 0.24 TCGA-EE-A2GP-06 7 5334561 5334561 G A SLC29A4 Silent p.G205G 0.18 TCGA-EE-A2GP-06 7 6189856 6189856 G A USP42 Missense_Mutation p.D677N 0.37 tolerated(0.1) possibly_damaging(0.571) TCGA-EE-A2GP-06 7 65419208 65419208 T C VKORC1L1 Missense_Mutation p.L151P 0.42 tolerated(0.07) benign(0.438) TCGA-EE-A2GP-06 7 65551585 65551585 C T ASL Missense_Mutation p.L154F 0.37 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GP-06 7 72922733 72922733 G A BAZ1B Missense_Mutation p.S98F 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2GP-06 7 76909908 76909908 C T CCDC146 Silent p.I619I 0.35 TCGA-EE-A2GP-06 7 82582113 82582113 C T PCLO Missense_Mutation p.G2719E 0.31 unknown(0) TCGA-EE-A2GP-06 7 82785457 82785457 G A PCLO Missense_Mutation p.S167F 0.37 unknown(0) TCGA-EE-A2GP-06 7 84751159 84751159 G A SEMA3D Missense_Mutation p.H17Y 0.24 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GP-06 7 99145873 99145873 G A FAM200A Missense_Mutation p.S53F 0.42 tolerated(0.19) probably_damaging(0.928) TCGA-EE-A2GP-06 8 103324674 103324674 G A UBR5 Missense_Mutation p.P683S 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2GP-06 8 104240299 104240299 G A BAALC Missense_Mutation p.R137Q 0.37 tolerated(0.32) benign(0.003) TCGA-EE-A2GP-06 8 116617158 116617158 G T TRPS1 Missense_Mutation p.F346L 0.41 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A2GP-06 8 118830695 118830695 G A EXT1 Silent p.V537V 0.22 TCGA-EE-A2GP-06 8 124968253 124968253 G A FER1L6 Silent p.K5K 0.39 TCGA-EE-A2GP-06 8 125052191 125052191 G A FER1L6 Missense_Mutation p.G845R 0.39 deleterious(0) possibly_damaging(0.649) TCGA-EE-A2GP-06 8 126017847 126017847 C T SQLE Missense_Mutation p.P209S 0.42 tolerated(0.15) benign(0.031) TCGA-EE-A2GP-06 8 12957134 12957134 G A DLC1 Silent p.P904P 0.29 TCGA-EE-A2GP-06 8 133645203 133645203 C T LRRC6 Missense_Mutation p.D146N 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GP-06 8 139165175 139165175 C T FAM135B Missense_Mutation p.E515K 0.46 tolerated(0.21) benign(0.004) TCGA-EE-A2GP-06 8 142367271 142367271 G A GPR20 Silent p.L251L 0.40 TCGA-EE-A2GP-06 8 143961104 143961104 G A CYP11B1 Silent p.P42P 0.35 TCGA-EE-A2GP-06 8 144732412 144732412 C T ZNF623 Missense_Mutation p.P124S 0.30 tolerated(0.11) benign(0.018) TCGA-EE-A2GP-06 8 145689869 145689869 G A CYHR1 Missense_Mutation p.P74S 0.16 tolerated(0.16) benign(0.057) TCGA-EE-A2GP-06 8 145999521 145999521 C T ZNF34 Silent p.R271R 0.44 TCGA-EE-A2GP-06 8 1728417 1728417 C T CLN8 Missense_Mutation p.A182V 0.26 tolerated(0.13) possibly_damaging(0.784) TCGA-EE-A2GP-06 8 23702231 23702231 A G STC1 3'UTR 0.20 TCGA-EE-A2GP-06 8 24209517 24209517 C T ADAM28 Silent p.P732P 0.36 TCGA-EE-A2GP-06 8 24813375 24813375 C T CTD-2168K21.2 5'Flank 0.33 TCGA-EE-A2GP-06 8 28574495 28574495 C T EXTL3 Nonsense_Mutation p.Q307* 0.42 TCGA-EE-A2GP-06 8 3081279 3081279 C T CSMD1 Missense_Mutation p.D1486N 0.32 probably_damaging(0.918) TCGA-EE-A2GP-06 8 3267101 3267101 G A CSMD1 Missense_Mutation p.P530S 0.26 probably_damaging(0.999) TCGA-EE-A2GP-06 8 36644919 36644919 C T KCNU1 Silent p.A97A 0.48 TCGA-EE-A2GP-06 8 36664931 36664931 C T KCNU1 Missense_Mutation p.P207S 0.40 tolerated(0.27) probably_damaging(1) TCGA-EE-A2GP-06 8 39792592 39792592 G A IDO2 5'UTR 0.35 TCGA-EE-A2GP-06 8 39872860 39872860 C T IDO2 Silent p.I334I 0.19 TCGA-EE-A2GP-06 8 42620267 42620267 T A CHRNA6 Missense_Mutation p.N54Y 0.39 deleterious(0.02) probably_damaging(0.945) TCGA-EE-A2GP-06 8 48690306 48690306 G A PRKDC Missense_Mutation p.P3994S 0.38 benign(0.034) TCGA-EE-A2GP-06 8 49985398 49985398 C T C8orf22 Silent p.S3S 0.41 TCGA-EE-A2GP-06 8 59852082 59852082 C T TOX Missense_Mutation p.E64K 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A2GP-06 8 61748831 61748831 C T CHD7 Silent p.L1326L 0.37 TCGA-EE-A2GP-06 8 69012065 69012065 C T PREX2 Missense_Mutation p.S901F 0.41 deleterious(0) benign(0.259) TCGA-EE-A2GP-06 8 76465340 76465340 G A HNF4G Missense_Mutation p.D175N 0.32 deleterious(0.02) possibly_damaging(0.678) TCGA-EE-A2GP-06 8 77764018 77764018 G A ZFHX4 Missense_Mutation p.A1621T 0.39 possibly_damaging(0.682) TCGA-EE-A2GP-06 8 86351966 86351966 C T CA3 Silent p.F20F 0.37 TCGA-EE-A2GP-06 8 87679166 87679166 C T CNGB3 Missense_Mutation p.G280E 0.38 deleterious(0.01) possibly_damaging(0.513) TCGA-EE-A2GP-06 8 8998397 8998397 G A PPP1R3B Silent p.S255S 0.38 TCGA-EE-A2GP-06 8 93029646 93029646 C T RUNX1T1 Intron 0.36 TCGA-EE-A2GP-06 9 103109085 103109085 T C TEX10 Missense_Mutation p.S262G 0.63 tolerated(0.57) benign(0.063) TCGA-EE-A2GP-06 9 107298775 107298775 G A OR13C3 Missense_Mutation p.S107F 0.56 tolerated(0.35) benign(0.077) TCGA-EE-A2GP-06 9 107331452 107331452 G A OR13C8 Missense_Mutation p.E2K 0.67 tolerated(0.15) benign(0.003) TCGA-EE-A2GP-06 9 112969737 112969737 G A C9orf152 Silent p.F41F 0.63 TCGA-EE-A2GP-06 9 113563067 113563067 C T MUSK Silent p.Y803Y 0.62 TCGA-EE-A2GP-06 9 120476865 120476865 C T TLR4 Missense_Mutation p.S820L 0.64 tolerated(0.18) benign(0.001) TCGA-EE-A2GP-06 9 124094751 124094751 G A GSN Missense_Mutation p.R740Q 0.44 tolerated(0.49) benign(0.165) TCGA-EE-A2GP-06 9 124094753 124094753 C G GSN Missense_Mutation p.R741G 0.44 tolerated(0.63) benign(0.086) TCGA-EE-A2GP-06 9 124535703 124535703 C A DAB2IP Missense_Mutation p.R938S 0.19 tolerated(0.12) possibly_damaging(0.676) TCGA-EE-A2GP-06 9 130494563 130494563 G A TOR2A Intron 0.65 TCGA-EE-A2GP-06 9 137642408 137642408 C T COL5A1 Silent p.G505G 0.61 TCGA-EE-A2GP-06 9 137658318 137658318 G A COL5A1 Missense_Mutation p.G703S 0.07 probably_damaging(0.991) TCGA-EE-A2GP-06 9 140079394 140079394 C T ANAPC2 Missense_Mutation p.R340H 0.20 deleterious(0.03) benign(0.298) TCGA-EE-A2GP-06 9 16552649 16552649 G A BNC2 Missense_Mutation p.P183L 0.34 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GP-06 9 17457623 17457623 C T CNTLN Silent p.S1072S 0.47 TCGA-EE-A2GP-06 9 20907175 20907175 C T FOCAD Silent p.H884H 0.70 TCGA-EE-A2GP-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.63 TCGA-EE-A2GP-06 9 21971187 21971187 G A CDKN2A Silent p.A57A 0.63 TCGA-EE-A2GP-06 9 71555700 71555700 C T PIP5K1B Missense_Mutation p.S499L 0.20 deleterious_low_confidence(0) benign(0.054) TCGA-EE-A2GP-06 9 72131836 72131836 G A APBA1 Silent p.I97I 0.74 TCGA-EE-A2GP-06 9 74324376 74324376 G A TMEM2 Silent p.V928V 0.70 TCGA-EE-A2GP-06 9 77282758 77282758 C T RORB Missense_Mutation p.S351F 0.69 tolerated(0.08) benign(0.269) TCGA-EE-A2GP-06 9 8331707 8331707 G A PTPRD Silent p.F1803F 0.64 TCGA-EE-A2GP-06 9 8486278 8486278 C T PTPRD Missense_Mutation p.V847M 0.73 tolerated(0.09) possibly_damaging(0.659) TCGA-EE-A2GP-06 9 95599818 95599818 C A ANKRD19P RNA 0.29 TCGA-EE-A2GP-06 X 100169882 100169882 C T XKRX Silent p.L265L 0.75 TCGA-EE-A2GP-06 X 106359888 106359888 G A RBM41 Silent p.S39S 0.75 TCGA-EE-A2GP-06 X 12906151 12906151 C T TLR7 Silent p.L842L 0.75 TCGA-EE-A2GP-06 X 133547593 133547593 A G PHF6 Missense_Mutation p.K164R 0.81 tolerated(0.41) benign(0.002) TCGA-EE-A2GP-06 X 135427486 135427486 G A GPR112 Missense_Mutation p.E541K 0.79 tolerated(0.07) benign(0.021) TCGA-EE-A2GP-06 X 135618248 135618248 G A VGLL1 Nonsense_Mutation p.W23* 0.69 TCGA-EE-A2GP-06 X 147985781 147985781 C T AFF2 Missense_Mutation p.P464S 0.79 deleterious(0.04) benign(0.13) TCGA-EE-A2GP-06 X 151092693 151092693 C T MAGEA4 Missense_Mutation p.S186F 0.75 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GP-06 X 155119165 155119165 C T VAMP7 Silent p.T12T 0.23 TCGA-EE-A2GP-06 X 15555305 15555305 G A BMX Missense_Mutation p.G424E 0.74 deleterious(0) probably_damaging(1) TCGA-EE-A2GP-06 X 3228206 3228206 C T MXRA5 Missense_Mutation p.E2680K 0.72 tolerated(0.29) possibly_damaging(0.464) TCGA-EE-A2GP-06 X 3228207 3228207 C T MXRA5 Silent p.L2679L 0.72 TCGA-EE-A2GP-06 X 50377589 50377589 G A SHROOM4 Missense_Mutation p.P495L 0.72 tolerated(0.6) benign(0.02) TCGA-EE-A2GP-06 X 51151080 51151080 C T CXorf67 Silent p.V404V 0.83 TCGA-EE-A2GP-06 X 54161465 54161465 G A FAM120C Missense_Mutation p.S472F 0.83 tolerated(0.1) possibly_damaging(0.563) TCGA-EE-A2GP-06 X 75003316 75003316 C T MAGEE2 Silent p.%3D 0.81 TCGA-EE-A2GP-06 X 83129138 83129138 G A CYLC1 Silent p.K474K 0.77 TCGA-EE-A2GR-06 10 101715238 101715238 G A DNMBP Nonsense_Mutation p.R665* 0.33 TCGA-EE-A2GR-06 10 102048186 102048186 G A PKD2L1 Silent p.S795S 0.44 TCGA-EE-A2GR-06 10 102255225 102255225 G A SEC31B Missense_Mutation p.P797S 0.44 deleterious(0.04) benign(0.057) TCGA-EE-A2GR-06 10 103339208 103339208 G A POLL 3'UTR 0.35 TCGA-EE-A2GR-06 10 103339209 103339209 G A POLL 3'UTR 0.35 TCGA-EE-A2GR-06 10 103827536 103827536 C T HPS6 Missense_Mutation p.P769S 0.47 tolerated(0.21) possibly_damaging(0.803) TCGA-EE-A2GR-06 10 103899829 103899829 C A PPRC1 Silent p.R522R 0.46 TCGA-EE-A2GR-06 10 104459154 104459154 A T ARL3 Missense_Mutation p.N80K 0.36 tolerated(0.1) possibly_damaging(0.787) TCGA-EE-A2GR-06 10 105824312 105824312 G A COL17A1 Missense_Mutation p.P217L 0.50 unknown(0) TCGA-EE-A2GR-06 10 111642289 111642289 G A XPNPEP1 Silent p.I314I 0.24 TCGA-EE-A2GR-06 10 113913163 113913163 G A GPAM 3'UTR 0.32 TCGA-EE-A2GR-06 10 114905797 114905797 G A TCF7L2 Silent p.T272T 0.39 TCGA-EE-A2GR-06 10 115804274 115804274 C T ADRB1 Missense_Mutation p.S128F 0.45 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GR-06 10 117849277 117849277 A G GFRA1 Missense_Mutation p.V391A 0.43 tolerated(0.25) benign(0.002) TCGA-EE-A2GR-06 10 117856168 117856168 A T GFRA1 Missense_Mutation p.I293N 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 10 118385531 118385531 C T PNLIPRP2 Silent p.I93I 0.23 TCGA-EE-A2GR-06 10 119307636 119307636 G C EMX2 Missense_Mutation p.G218R 0.18 deleterious(0) possibly_damaging(0.449) TCGA-EE-A2GR-06 10 120445614 120445614 G A CACUL1 3'UTR 0.23 TCGA-EE-A2GR-06 10 123279667 123279667 C T FGFR2 Silent p.R255R 0.39 TCGA-EE-A2GR-06 10 123843060 123843060 G A TACC2 Missense_Mutation p.G349S 0.46 benign(0.155) TCGA-EE-A2GR-06 10 123845148 123845148 C T TACC2 Missense_Mutation p.P1045S 0.50 benign(0.08) TCGA-EE-A2GR-06 10 123845920 123845920 G A TACC2 Missense_Mutation p.G1302E 0.44 benign(0.043) TCGA-EE-A2GR-06 10 123845921 123845921 G A TACC2 Silent p.G1302G 0.44 TCGA-EE-A2GR-06 10 123970317 123970317 G A TACC2 Missense_Mutation p.R2126Q 0.22 probably_damaging(0.994) TCGA-EE-A2GR-06 10 123996969 123996969 C T TACC2 Silent p.I2729I 0.48 TCGA-EE-A2GR-06 10 124331842 124331842 C T DMBT1 Missense_Mutation p.S67F 0.32 tolerated_low_confidence(0.59) benign(0.104) TCGA-EE-A2GR-06 10 124711492 124711492 G A C10orf88 Missense_Mutation p.S140F 0.32 deleterious(0.04) possibly_damaging(0.735) TCGA-EE-A2GR-06 10 129901361 129901361 G A MKI67 Silent p.L2915L 0.43 TCGA-EE-A2GR-06 10 129913558 129913558 T C MKI67 Missense_Mutation p.R372G 0.48 tolerated(0.4) benign(0.01) TCGA-EE-A2GR-06 10 131671774 131671774 C T EBF3 Silent p.G241G 0.40 TCGA-EE-A2GR-06 10 135011270 135011270 C A KNDC1 Missense_Mutation p.P635Q 0.70 tolerated(0.11) benign(0.1) TCGA-EE-A2GR-06 10 135440242 135440242 C T FRG2B Missense_Mutation p.G2E 0.13 tolerated(0.85) probably_damaging(1) TCGA-EE-A2GR-06 10 15701017 15701017 T G ITGA8 Missense_Mutation p.Q310P 0.20 tolerated(0.09) benign(0.005) TCGA-EE-A2GR-06 10 16916440 16916440 C T CUBN Missense_Mutation p.D3057N 0.24 tolerated(0.81) benign(0.001) TCGA-EE-A2GR-06 10 18789789 18789789 G A CACNB2 Missense_Mutation p.E169K 0.25 deleterious(0.01) possibly_damaging(0.806) TCGA-EE-A2GR-06 10 21435425 21435425 C T C10orf113 Missense_Mutation p.E5K 0.50 tolerated_low_confidence(0.09) possibly_damaging(0.807) TCGA-EE-A2GR-06 10 23235172 23235172 T A ARMC3 Missense_Mutation p.Y50N 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 10 23250858 23250858 C T ARMC3 Missense_Mutation p.P195S 0.33 tolerated(0.16) benign(0.126) TCGA-EE-A2GR-06 10 24896728 24896728 G T ARHGAP21 Missense_Mutation p.P843T 0.19 deleterious(0) probably_damaging(0.923) TCGA-EE-A2GR-06 10 25145914 25145914 C T PRTFDC1 Missense_Mutation p.G145E 0.25 tolerated(0.15) benign(0.173) TCGA-EE-A2GR-06 10 25464474 25464474 G A GPR158 Missense_Mutation p.G42E 0.29 tolerated_low_confidence(0.27) benign(0.133) TCGA-EE-A2GR-06 10 27404987 27404987 A G YME1L1 Splice_Site p.X697_splice 0.47 TCGA-EE-A2GR-06 10 28224136 28224136 T G ARMC4 Silent p.T766T 0.19 TCGA-EE-A2GR-06 10 28228904 28228904 C T ARMC4 Silent p.R673R 0.50 TCGA-EE-A2GR-06 10 28233806 28233806 C T ARMC4 Missense_Mutation p.R491K 0.12 tolerated(0.1) benign(0.272) TCGA-EE-A2GR-06 10 31138274 31138274 G A ZNF438 Nonsense_Mutation p.Q354* 0.57 TCGA-EE-A2GR-06 10 3161004 3161004 C T PFKP Silent p.I491I 0.20 TCGA-EE-A2GR-06 10 37442523 37442523 G A ANKRD30A Silent p.Q521Q 0.16 TCGA-EE-A2GR-06 10 3822344 3822344 G A KLF6 Nonsense_Mutation p.R252* 0.59 TCGA-EE-A2GR-06 10 38306296 38306296 C T ZNF33A Missense_Mutation p.P78S 0.26 tolerated(0.77) benign(0.022) TCGA-EE-A2GR-06 10 38343834 38343834 C T ZNF33A Missense_Mutation p.S261F 0.56 tolerated(0.22) benign(0.013) TCGA-EE-A2GR-06 10 38344403 38344403 C T ZNF33A Missense_Mutation p.R451C 0.37 tolerated(0.65) benign(0) TCGA-EE-A2GR-06 10 38406388 38406388 C T ZNF37A Silent p.F103F 0.42 TCGA-EE-A2GR-06 10 43016349 43016349 G A ZNF37BP RNA 0.45 TCGA-EE-A2GR-06 10 45878075 45878075 C T ALOX5 Missense_Mutation p.P99S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 10 45938946 45938946 G A ALOX5 Missense_Mutation p.D512N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 10 46999641 46999641 G A GPRIN2 Missense_Mutation p.G254E 0.10 tolerated(0.5) benign(0.43) TCGA-EE-A2GR-06 10 48382025 48382025 C T RBP3 Silent p.G1208G 0.50 TCGA-EE-A2GR-06 10 48416399 48416399 C T GDF2 Missense_Mutation p.D99N 0.20 deleterious(0.03) probably_damaging(0.94) TCGA-EE-A2GR-06 10 49376703 49376703 C T FRMPD2 Missense_Mutation p.E1158K 0.97 deleterious(0.02) probably_damaging(0.942) TCGA-EE-A2GR-06 10 49791076 49791076 C T ARHGAP22 Silent p.K52K 0.41 TCGA-EE-A2GR-06 10 50682166 50682166 C T ERCC6 Nonsense_Mutation p.W835* 0.29 TCGA-EE-A2GR-06 10 5203729 5203729 C T AKR1CL1 Intron 0.36 TCGA-EE-A2GR-06 10 52587988 52587988 T A A1CF Missense_Mutation p.E232D 0.38 tolerated(0.11) benign(0.013) TCGA-EE-A2GR-06 10 5435503 5435503 C T TUBAL3 Missense_Mutation p.E440K 0.24 deleterious_low_confidence(0.03) benign(0.229) TCGA-EE-A2GR-06 10 55591205 55591205 C G PCDH15 Missense_Mutation p.E1358Q 0.47 deleterious(0.04) benign(0.032) TCGA-EE-A2GR-06 10 61828521 61828521 C T ANK3 Missense_Mutation p.E4040K 0.24 probably_damaging(0.959) TCGA-EE-A2GR-06 10 67680180 67680180 C T CTNNA3 Missense_Mutation p.E866K 0.44 tolerated(0.12) unknown(0) TCGA-EE-A2GR-06 10 67726392 67726392 C T CTNNA3 Missense_Mutation p.G793E 0.21 deleterious(0.03) unknown(0) TCGA-EE-A2GR-06 10 67829151 67829151 C T CTNNA3 Missense_Mutation p.E692K 0.29 deleterious(0.03) unknown(0) TCGA-EE-A2GR-06 10 70451120 70451120 T C TET1 Missense_Mutation p.L1987S 0.47 tolerated(0.13) benign(0.22) TCGA-EE-A2GR-06 10 73051457 73051457 C T UNC5B Silent p.F521F 0.23 TCGA-EE-A2GR-06 10 73056460 73056460 G C UNC5B Silent p.G817G 0.23 TCGA-EE-A2GR-06 10 74267951 74267951 G A MICU1 Missense_Mutation p.S205F 0.36 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GR-06 10 74326472 74326472 A C MICU1 Missense_Mutation p.I27S 0.43 tolerated_low_confidence(0.87) benign(0.001) TCGA-EE-A2GR-06 10 75114567 75114567 G A TTC18 5'UTR 0.58 TCGA-EE-A2GR-06 10 75407957 75407957 C T SYNPO2L Missense_Mutation p.V485I 0.36 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GR-06 10 75454536 75454536 G A AGAP5 Missense_Mutation p.P107S 0.32 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2GR-06 10 75541845 75541845 C T CHCHD1 Silent p.P4P 0.27 TCGA-EE-A2GR-06 10 7621809 7621809 C T ITIH5 Missense_Mutation p.D443N 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GR-06 10 8007517 8007517 T - TAF3 Frame_Shift_Del p.L682Cfs*15 0.30 TCGA-EE-A2GR-06 10 8051254 8051254 C T TAF3 Silent p.P843P 0.50 TCGA-EE-A2GR-06 10 81272769 81272769 G A EIF5AL1 Missense_Mutation p.E122K 0.19 tolerated(0.37) benign(0.067) TCGA-EE-A2GR-06 10 82126836 82126836 G A DYDC2 3'UTR 0.67 TCGA-EE-A2GR-06 10 84118593 84118593 G A NRG3 Missense_Mutation p.E308K 0.47 tolerated(0.26) possibly_damaging(0.848) TCGA-EE-A2GR-06 10 87379753 87379753 G A GRID1 Missense_Mutation p.A744V 0.49 deleterious(0.03) benign(0.014) TCGA-EE-A2GR-06 10 89472915 89472915 G A PAPSS2 Missense_Mutation p.D77N 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 10 93719 93719 C T TUBB8 Missense_Mutation p.E205K 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-EE-A2GR-06 10 93773519 93773519 A C BTAF1 Silent p.I1469I 0.42 TCGA-EE-A2GR-06 10 93784552 93784552 G A BTAF1 Missense_Mutation p.E1635K 0.49 tolerated(0.29) benign(0.011) TCGA-EE-A2GR-06 10 95400236 95400236 G A PDE6C Silent p.R553R 0.18 TCGA-EE-A2GR-06 10 95791619 95791619 G A PLCE1 Silent p.K272K 0.25 TCGA-EE-A2GR-06 10 95791693 95791693 T A PLCE1 Nonsense_Mutation p.L297* 0.47 TCGA-EE-A2GR-06 10 96466663 96466663 G A CYP2C18 Silent p.L255L 0.15 TCGA-EE-A2GR-06 10 96480249 96480249 C T CYP2C18 Silent p.L306L 0.33 TCGA-EE-A2GR-06 10 96748855 96748855 C T CYP2C9 3'UTR 0.27 TCGA-EE-A2GR-06 10 96826965 96826965 C T CYP2C8 Missense_Mutation p.A161T 0.26 deleterious(0.01) benign(0.037) TCGA-EE-A2GR-06 10 98355379 98355379 C T PIK3AP1 Silent p.R791R 0.44 TCGA-EE-A2GR-06 10 99025843 99025843 G A ARHGAP19 Silent p.S32S 0.14 TCGA-EE-A2GR-06 11 100211914 100211914 G A CNTN5 Missense_Mutation p.E1003K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GR-06 11 100226960 100226960 G A CNTN5 3'UTR 0.42 TCGA-EE-A2GR-06 11 101343009 101343009 C T TRPC6 Silent p.V688V 0.44 TCGA-EE-A2GR-06 11 101771207 101771207 G A ANGPTL5 Silent p.F205F 0.27 TCGA-EE-A2GR-06 11 1020106 1020106 G A MUC6 Silent p.P1264P 0.43 TCGA-EE-A2GR-06 11 1020107 1020107 G A MUC6 Missense_Mutation p.P1264L 0.47 unknown(0) TCGA-EE-A2GR-06 11 102201752 102201752 A G BIRC3 Silent p.E368E 0.42 TCGA-EE-A2GR-06 11 102567566 102567566 C T MMP27 Missense_Mutation p.G207E 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2GR-06 11 10514955 10514956 - A AMPD3 Frame_Shift_Ins p.H344Afs*8 0.32 TCGA-EE-A2GR-06 11 108121480 108121480 T A ATM Missense_Mutation p.C430S 0.42 tolerated(0.82) benign(0.001) TCGA-EE-A2GR-06 11 108380982 108380982 C T EXPH5 Missense_Mutation p.R1751K 0.48 tolerated(0.13) benign(0.031) TCGA-EE-A2GR-06 11 108381835 108381835 G A EXPH5 Missense_Mutation p.H1467Y 0.92 tolerated(1) benign(0.182) TCGA-EE-A2GR-06 11 1097741 1097741 C T MUC2 Silent p.I2278I 0.32 TCGA-EE-A2GR-06 11 113264443 113264443 C T ANKK1 Silent p.L142L 0.33 TCGA-EE-A2GR-06 11 116661143 116661143 C T APOA5 Missense_Mutation p.E268K 0.95 tolerated(0.17) benign(0.171) TCGA-EE-A2GR-06 11 117352764 117352764 C T DSCAML1 Missense_Mutation p.G885R 0.92 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A2GR-06 11 118343788 118343788 C T KMT2A Silent p.A638A 0.42 TCGA-EE-A2GR-06 11 119182819 119182819 G A MCAM Silent p.T362T 0.93 TCGA-EE-A2GR-06 11 121008498 121008498 G A TECTA Missense_Mutation p.G1104S 0.45 tolerated(0.07) probably_damaging(1) TCGA-EE-A2GR-06 11 121428100 121428100 C T SORL1 Silent p.L883L 0.47 TCGA-EE-A2GR-06 11 124189215 124189215 C T OR8D2 Silent p.R293R 0.40 TCGA-EE-A2GR-06 11 124253153 124253153 G A OR8B2 Silent p.F29F 0.29 TCGA-EE-A2GR-06 11 124618332 124618332 C T VSIG2 Missense_Mutation p.E269K 0.94 tolerated(0.27) benign(0.019) TCGA-EE-A2GR-06 11 1263664 1263664 G A MUC5B Missense_Mutation p.E1852K 0.30 unknown(0) TCGA-EE-A2GR-06 11 13388252 13388252 C T ARNTL Missense_Mutation p.P198L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 11 134212737 134212737 C T GLB1L2 Missense_Mutation p.S59F 1.00 tolerated(0.98) benign(0.285) TCGA-EE-A2GR-06 11 1459553 1459553 G A BRSK2 Silent p.A114A 0.40 TCGA-EE-A2GR-06 11 1643324 1643324 G A KRTAP5-4 5'UTR 0.24 TCGA-EE-A2GR-06 11 17793886 17793886 G A KCNC1 Silent p.L415L 0.23 TCGA-EE-A2GR-06 11 18026049 18026049 G A SERGEF Missense_Mutation p.S129F 0.20 deleterious(0.03) benign(0.053) TCGA-EE-A2GR-06 11 18159652 18159652 G A MRGPRX3 Silent p.V301V 0.18 TCGA-EE-A2GR-06 11 19259529 19259529 G A E2F8 Missense_Mutation p.P56S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 11 20178601 20178601 C T DBX1 Silent p.L218L 0.14 TCGA-EE-A2GR-06 11 22271783 22271783 G A ANO5 Silent p.K293K 0.35 TCGA-EE-A2GR-06 11 33050310 33050310 G A DEPDC7 Missense_Mutation p.G252R 0.44 tolerated(0.16) benign(0.002) TCGA-EE-A2GR-06 11 33564920 33564920 C T KIAA1549L Missense_Mutation p.T307I 0.25 tolerated_low_confidence(0.07) benign(0.006) TCGA-EE-A2GR-06 11 34909908 34909908 C T APIP Silent p.R131R 0.46 TCGA-EE-A2GR-06 11 34909909 34909909 C T APIP Missense_Mutation p.R131Q 0.47 tolerated(0.11) benign(0.001) TCGA-EE-A2GR-06 11 36596675 36596675 C T RAG1 Silent p.D607D 0.32 TCGA-EE-A2GR-06 11 40136405 40136405 G A LRRC4C Missense_Mutation p.P480S 0.58 deleterious(0.04) benign(0.009) TCGA-EE-A2GR-06 11 4147981 4147981 T A RRM1 Missense_Mutation p.F463Y 0.38 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-EE-A2GR-06 11 4389181 4389181 C T OR52B4 Silent p.G115G 0.62 TCGA-EE-A2GR-06 11 44255677 44255677 C T EXT2 Silent p.L640L 1.00 TCGA-EE-A2GR-06 11 4615299 4615299 G A OR52I1 Missense_Mutation p.E11K 0.49 tolerated(0.87) benign(0.006) TCGA-EE-A2GR-06 11 46407155 46407155 G A CHRM4 Missense_Mutation p.A318V 1.00 tolerated(0.32) benign(0.053) TCGA-EE-A2GR-06 11 47315489 47315489 C T MADD Silent p.S1157S 0.94 TCGA-EE-A2GR-06 11 47713758 47713758 C T AGBL2 Missense_Mutation p.G249R 0.95 deleterious(0.04) benign(0.334) TCGA-EE-A2GR-06 11 4825340 4825340 G A OR52R1 Missense_Mutation p.H91Y 0.33 deleterious(0.01) benign(0.303) TCGA-EE-A2GR-06 11 48286156 48286156 C T OR4X1 Silent p.F248F 0.91 TCGA-EE-A2GR-06 11 4936765 4936765 G A OR51G2 Silent p.S43S 0.22 TCGA-EE-A2GR-06 11 4968319 4968319 G A OR51A4 Silent p.I4I 0.61 TCGA-EE-A2GR-06 11 5010922 5010922 C T MMP26 Silent p.L48L 0.52 TCGA-EE-A2GR-06 11 5173160 5173160 C T OR52A1 Missense_Mutation p.G147E 0.58 deleterious(0) benign(0.141) TCGA-EE-A2GR-06 11 5221055 5221055 G A OR51V1 Silent p.F292F 0.57 TCGA-EE-A2GR-06 11 5410987 5410987 C T OR51M1 Missense_Mutation p.S120F 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GR-06 11 5510570 5510570 C A OR52D1 Missense_Mutation p.L212M 0.46 tolerated(0.09) probably_damaging(0.958) TCGA-EE-A2GR-06 11 55339658 55339658 C T OR4C16 Missense_Mutation p.P19S 0.24 deleterious(0.01) possibly_damaging(0.881) TCGA-EE-A2GR-06 11 55418543 55418543 C T OR4S2 Missense_Mutation p.S55L 0.98 deleterious(0.01) benign(0.011) TCGA-EE-A2GR-06 11 55563485 55563485 C T OR5D14 Missense_Mutation p.L152F 0.78 tolerated(0.41) benign(0.005) TCGA-EE-A2GR-06 11 5565796 5565796 C T OR52H1 Missense_Mutation p.G320R 0.44 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-EE-A2GR-06 11 56058353 56058353 G A OR8H1 Silent p.F62F 0.29 TCGA-EE-A2GR-06 11 56086623 56086623 A C OR8K3 Missense_Mutation p.I281L 0.15 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EE-A2GR-06 11 56185123 56185123 C T OR5R1 Missense_Mutation p.E196K 0.32 tolerated(0.06) benign(0.345) TCGA-EE-A2GR-06 11 57068407 57068407 C T TNKS1BP1 Missense_Mutation p.G1694R 0.77 deleterious(0) probably_damaging(0.969) TCGA-EE-A2GR-06 11 57958682 57958682 C T OR9Q2 Silent p.T240T 0.67 TCGA-EE-A2GR-06 11 58207156 58207156 G A OR5B12 Missense_Mutation p.H157Y 0.62 tolerated_low_confidence(0.09) benign(0.039) TCGA-EE-A2GR-06 11 58207436 58207436 G C OR5B12 Missense_Mutation p.N63K 0.92 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-EE-A2GR-06 11 58478046 58478046 G A GLYAT Intron 0.29 TCGA-EE-A2GR-06 11 58919359 58919359 C T FAM111A Missense_Mutation p.P73L 0.66 tolerated(0.68) benign(0.004) TCGA-EE-A2GR-06 11 5969179 5969179 T G OR56A3 Silent p.L201L 0.61 TCGA-EE-A2GR-06 11 6048031 6048031 G A OR56A1 Missense_Mutation p.R302W 0.48 deleterious(0) benign(0.425) TCGA-EE-A2GR-06 11 61539013 61539013 C T MYRF Missense_Mutation p.S261F 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 11 63667508 63667508 G A MARK2 Missense_Mutation p.D232N 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 11 63987457 63987457 G A FERMT3 Missense_Mutation p.G396R 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2GR-06 11 64338552 64338552 C T SLC22A11 3'UTR 0.31 TCGA-EE-A2GR-06 11 6461946 6461946 C T HPX Missense_Mutation p.G33E 0.36 tolerated(0.27) benign(0.013) TCGA-EE-A2GR-06 11 64789342 64789342 C T ARL2 3'UTR 0.65 TCGA-EE-A2GR-06 11 64825871 64825871 G A NAALADL1 Silent p.D41D 0.35 TCGA-EE-A2GR-06 11 65375207 65375207 G A MAP3K11 Silent p.L384L 0.32 TCGA-EE-A2GR-06 11 65375241 65375241 G A MAP3K11 Silent p.I372I 0.31 TCGA-EE-A2GR-06 11 65412478 65412478 C T SIPA1 Missense_Mutation p.S346L 0.26 deleterious(0.02) benign(0.254) TCGA-EE-A2GR-06 11 65417270 65417270 C T SIPA1 Missense_Mutation p.P894S 0.30 tolerated(0.5) benign(0.004) TCGA-EE-A2GR-06 11 65792699 65792699 C T CATSPER1 Silent p.Q384Q 0.32 TCGA-EE-A2GR-06 11 66082377 66082377 C A CD248 Missense_Mutation p.V708L 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GR-06 11 66189691 66189691 G A NPAS4 Silent p.G92G 0.16 TCGA-EE-A2GR-06 11 66276699 66276699 G A DPP3 Missense_Mutation p.E731K 0.31 deleterious_low_confidence(0.04) benign(0.001) TCGA-EE-A2GR-06 11 66807475 66807475 C T SYT12 Missense_Mutation p.S141F 0.32 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GR-06 11 67260519 67260519 G A PITPNM1 Silent p.I1119I 0.58 TCGA-EE-A2GR-06 11 67433650 67433650 C T ALDH3B2 Missense_Mutation p.G88R 0.28 deleterious(0) possibly_damaging(0.711) TCGA-EE-A2GR-06 11 67789038 67789038 C A ALDH3B1 Missense_Mutation p.P215H 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 11 68171002 68171002 C T LRP5 Missense_Mutation p.P546S 0.47 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2GR-06 11 68315627 68315627 C T PPP6R3 Silent p.L169L 0.13 TCGA-EE-A2GR-06 11 68705749 68705749 C T IGHMBP2 Missense_Mutation p.A904V 0.36 tolerated(0.11) benign(0.4) TCGA-EE-A2GR-06 11 68705750 68705750 C T IGHMBP2 Silent p.A904A 0.36 TCGA-EE-A2GR-06 11 68839459 68839459 C T TPCN2 Silent p.S343S 0.47 TCGA-EE-A2GR-06 11 70009440 70009440 G A ANO1 Missense_Mutation p.M648I 0.30 deleterious(0) possibly_damaging(0.651) TCGA-EE-A2GR-06 11 70332684 70332684 G A SHANK2 Silent p.A1239A 0.42 TCGA-EE-A2GR-06 11 71150111 71150111 G A DHCR7 Silent p.F215F 0.36 TCGA-EE-A2GR-06 11 71293630 71293630 G A KRTAP5-11 Missense_Mutation p.S85F 0.36 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GR-06 11 71293631 71293631 A T KRTAP5-11 Missense_Mutation p.S85T 0.36 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A2GR-06 11 72289953 72289953 C G PDE2A Silent p.T819T 0.45 TCGA-EE-A2GR-06 11 73753138 73753138 G A C2CD3 Missense_Mutation p.S1874L 0.18 tolerated(0.77) benign(0.001) TCGA-EE-A2GR-06 11 74979994 74979994 G A ARRB1 Silent p.A344A 0.42 TCGA-EE-A2GR-06 11 76234319 76234319 C T C11orf30 Missense_Mutation p.T602M 0.71 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GR-06 11 76507464 76507464 C T TSKU Silent p.N268N 0.85 TCGA-EE-A2GR-06 11 76834767 76834767 C A CAPN5 Missense_Mutation p.L592M 0.10 tolerated(0.18) possibly_damaging(0.681) TCGA-EE-A2GR-06 11 7720302 7720302 G A OVCH2 Missense_Mutation p.S307F 0.53 tolerated(0.31) benign(0.015) TCGA-EE-A2GR-06 11 773624 773624 G A PDDC1 Missense_Mutation p.R85W 0.44 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GR-06 11 773625 773625 G A PDDC1 Silent p.A84A 0.44 TCGA-EE-A2GR-06 11 77411805 77411805 C T RSF1 Silent p.L823L 0.35 TCGA-EE-A2GR-06 11 77931434 77931434 C T GAB2 Silent p.K606K 0.25 TCGA-EE-A2GR-06 11 7846984 7846984 C G OR5P3 Missense_Mutation p.C179S 0.57 deleterious(0.01) possibly_damaging(0.777) TCGA-EE-A2GR-06 11 8008810 8008810 C T EIF3F 5'UTR 0.50 TCGA-EE-A2GR-06 11 802336 802336 G A PIDD Silent p.F345F 0.16 TCGA-EE-A2GR-06 11 83170881 83170881 G A DLG2 Missense_Mutation p.P970S 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2GR-06 11 85396053 85396053 G A CCDC89 Missense_Mutation p.P374L 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 11 88033707 88033707 G A CTSC Nonsense_Mutation p.R250* 0.50 TCGA-EE-A2GR-06 11 88033708 88033708 A C CTSC Silent p.V249V 0.47 TCGA-EE-A2GR-06 11 92531893 92531893 T C FAT3 Missense_Mutation p.V1905A 0.93 probably_damaging(0.913) TCGA-EE-A2GR-06 11 93806289 93806289 G A HEPHL1 Missense_Mutation p.R444K 0.80 tolerated(0.94) benign(0.027) TCGA-EE-A2GR-06 11 95826426 95826426 G A MAML2 Silent p.L257L 0.24 TCGA-EE-A2GR-06 11 9746214 9746214 C T SWAP70 Silent p.L142L 0.30 TCGA-EE-A2GR-06 11 99715827 99715827 G A CNTN5 Missense_Mutation p.R137Q 0.22 tolerated(0.22) probably_damaging(0.93) TCGA-EE-A2GR-06 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.25 tolerated(0.24) possibly_damaging(0.761) TCGA-EE-A2GR-06 12 101520720 101520720 A C ANO4 Silent p.R879R 0.42 TCGA-EE-A2GR-06 12 101555850 101555850 G A SLC5A8 Missense_Mutation p.P511L 0.74 tolerated(0.42) benign(0.001) TCGA-EE-A2GR-06 12 102591410 102591410 C T PMCH Missense_Mutation p.G47S 0.61 tolerated(0.51) benign(0) TCGA-EE-A2GR-06 12 102811506 102811506 C T IGF1 3'UTR 0.25 TCGA-EE-A2GR-06 12 103762703 103762703 G A C12orf42 Missense_Mutation p.S74F 0.69 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GR-06 12 104118750 104118750 C T STAB2 Intron 0.31 TCGA-EE-A2GR-06 12 105454852 105454852 T C ALDH1L2 Splice_Site p.X350_splice 0.32 TCGA-EE-A2GR-06 12 10560975 10560975 C T KLRC4 Missense_Mutation p.G98E 0.21 tolerated(1) benign(0.012) TCGA-EE-A2GR-06 12 106903233 106903233 C T POLR3B Missense_Mutation p.S1103F 0.18 deleterious(0.01) possibly_damaging(0.674) TCGA-EE-A2GR-06 12 108589878 108589878 G A WSCD2 Missense_Mutation p.G90E 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2GR-06 12 108686645 108686645 G A CMKLR1 Missense_Mutation p.S32F 0.33 deleterious(0.01) benign(0.027) TCGA-EE-A2GR-06 12 109278948 109278948 C T DAO Missense_Mutation p.L56F 0.58 tolerated(0.12) benign(0.401) TCGA-EE-A2GR-06 12 111318964 111318964 G A CCDC63 Silent p.K239K 0.26 TCGA-EE-A2GR-06 12 112910775 112910775 C T PTPN11 Missense_Mutation p.L262F 0.29 tolerated(0.09) benign(0.04) TCGA-EE-A2GR-06 12 112926270 112926270 C T PTPN11 Missense_Mutation p.T468M 0.57 deleterious(0) probably_damaging(0.941) TCGA-EE-A2GR-06 12 113314543 113314543 G A RPH3A Missense_Mutation p.R348Q 0.20 tolerated(0.11) benign(0.015) TCGA-EE-A2GR-06 12 115117417 115117417 G A TBX3 Missense_Mutation p.H253Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 12 11546390 11546390 C T PRB2 Missense_Mutation p.G208R 0.29 deleterious(0.03) unknown(0) TCGA-EE-A2GR-06 12 11546453 11546453 C G PRB2 Missense_Mutation p.G187R 0.20 tolerated(0.09) unknown(0) TCGA-EE-A2GR-06 12 11548455 11548455 C T PRB2 Silent p.L3L 0.44 TCGA-EE-A2GR-06 12 117013857 117013857 G A MAP1LC3B2 Missense_Mutation p.R37Q 0.31 deleterious(0) possibly_damaging(0.681) TCGA-EE-A2GR-06 12 119968833 119968833 G A CCDC60 Missense_Mutation p.E506K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 12 120241103 120241103 G A CIT Missense_Mutation p.P401L 0.55 tolerated(0.32) benign(0.001) TCGA-EE-A2GR-06 12 121756141 121756141 G A ANAPC5 Missense_Mutation p.S611F 0.45 deleterious(0.01) benign(0.309) TCGA-EE-A2GR-06 12 121878617 121878617 A C KDM2B Splice_Site p.X1204_splice 0.46 TCGA-EE-A2GR-06 12 122218920 122218920 G A RHOF Intron 0.29 TCGA-EE-A2GR-06 12 122735567 122735567 G A VPS33A Missense_Mutation p.T188M 0.38 tolerated(0.09) possibly_damaging(0.75) TCGA-EE-A2GR-06 12 123801828 123801828 G C SBNO1 Missense_Mutation p.R959G 0.20 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GR-06 12 123810811 123810811 G A SBNO1 Missense_Mutation p.S588F 0.20 deleterious(0.01) probably_damaging(0.929) TCGA-EE-A2GR-06 12 124399040 124399040 C T DNAH10 Missense_Mutation p.P3388L 0.18 probably_damaging(1) TCGA-EE-A2GR-06 12 124409633 124409633 C T DNAH10 Missense_Mutation p.P3817S 0.41 probably_damaging(0.999) TCGA-EE-A2GR-06 12 124824629 124824629 C T NCOR2 Silent p.Q1870Q 0.22 TCGA-EE-A2GR-06 12 126137106 126137106 G A TMEM132B Silent p.Q673Q 0.43 TCGA-EE-A2GR-06 12 12874024 12874024 G A CDKN1B 3'UTR 0.59 TCGA-EE-A2GR-06 12 13061501 13061501 C T GPRC5A Silent p.S106S 0.27 TCGA-EE-A2GR-06 12 130927162 130927162 G A RIMBP2 Silent p.F228F 0.33 TCGA-EE-A2GR-06 12 132426450 132426450 C T PUS1 Silent p.S386S 0.28 TCGA-EE-A2GR-06 12 132428095 132428095 C T PUS1 Silent p.P416P 0.15 TCGA-EE-A2GR-06 12 133237728 133237728 C G POLE Missense_Mutation p.G963R 0.49 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 12 14796605 14796605 G A GUCY2C Silent p.V611V 0.52 TCGA-EE-A2GR-06 12 14941981 14941981 G A WBP11 Nonsense_Mutation p.R466* 0.50 TCGA-EE-A2GR-06 12 14976469 14976469 C T C12orf60 Silent p.S200S 0.46 TCGA-EE-A2GR-06 12 176580 176580 G A IQSEC3 Missense_Mutation p.G178S 0.29 tolerated(0.36) benign(0.235) TCGA-EE-A2GR-06 12 18435355 18435355 T C PIK3C2G Silent p.L114L 0.53 TCGA-EE-A2GR-06 12 18552692 18552692 G A PIK3C2G Nonsense_Mutation p.W701* 0.35 TCGA-EE-A2GR-06 12 18573888 18573888 G A PIK3C2G Missense_Mutation p.E736K 0.20 deleterious(0.01) possibly_damaging(0.595) TCGA-EE-A2GR-06 12 18658279 18658279 C T PIK3C2G Silent p.I1028I 0.38 TCGA-EE-A2GR-06 12 18716344 18716344 G A PIK3C2G Missense_Mutation p.E1231K 0.52 tolerated(0.13) benign(0.008) TCGA-EE-A2GR-06 12 18891535 18891535 G A CAPZA3 Silent p.Q111Q 0.45 TCGA-EE-A2GR-06 12 1963203 1963203 C T CACNA2D4 Silent p.E720E 0.21 TCGA-EE-A2GR-06 12 20876070 20876070 C T SLCO1C1 Silent p.F356F 0.41 TCGA-EE-A2GR-06 12 20890040 20890040 G A SLCO1C1 Splice_Site p.X461_splice 0.22 TCGA-EE-A2GR-06 12 21069258 21069258 A G SLCO1B3 3'UTR 0.67 TCGA-EE-A2GR-06 12 21997802 21997802 G A ABCC9 Silent p.F1048F 0.45 TCGA-EE-A2GR-06 12 22028599 22028599 C T ABCC9 Missense_Mutation p.R694Q 0.25 tolerated(0.21) benign(0.006) TCGA-EE-A2GR-06 12 25267779 25267779 G A CASC1 Silent p.I474I 0.48 TCGA-EE-A2GR-06 12 27070630 27070630 G A ASUN Missense_Mutation p.S309L 0.43 tolerated(0.67) benign(0.001) TCGA-EE-A2GR-06 12 27521335 27521335 G A ARNTL2 Missense_Mutation p.D58N 0.49 tolerated(0.06) possibly_damaging(0.694) TCGA-EE-A2GR-06 12 2794921 2794921 G A CACNA1C Missense_Mutation p.E1913K 0.36 tolerated_low_confidence(0.09) benign(0.056) TCGA-EE-A2GR-06 12 307150 307150 G T SLC6A12 Missense_Mutation p.T289N 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 12 33030932 33030932 G A PKP2 Silent p.S294S 0.23 TCGA-EE-A2GR-06 12 33031882 33031882 G A PKP2 Missense_Mutation p.P103L 0.24 tolerated(0.19) benign(0.013) TCGA-EE-A2GR-06 12 40687346 40687346 G A LRRK2 Splice_Site p.X897_splice 0.53 TCGA-EE-A2GR-06 12 40745535 40745535 G A LRRK2 Silent p.E2192E 0.32 TCGA-EE-A2GR-06 12 41421698 41421698 C T CNTN1 Missense_Mutation p.S917F 0.34 tolerated(0.32) benign(0.154) TCGA-EE-A2GR-06 12 43821151 43821151 G A ADAMTS20 Missense_Mutation p.P1356L 0.30 tolerated(0.11) benign(0.003) TCGA-EE-A2GR-06 12 43825278 43825278 C T ADAMTS20 Missense_Mutation p.G1040R 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 12 46246331 46246331 C T ARID2 Silent p.T1475T 0.30 TCGA-EE-A2GR-06 12 48378799 48378799 G A COL2A1 Silent p.F604F 0.41 TCGA-EE-A2GR-06 12 4853837 4853837 G A GALNT8 Silent p.L277L 0.33 TCGA-EE-A2GR-06 12 49072876 49072876 C T KANSL2 Missense_Mutation p.R163K 0.32 tolerated(0.14) benign(0.406) TCGA-EE-A2GR-06 12 49087904 49087904 G A CCNT1 Missense_Mutation p.P365S 0.28 tolerated(0.28) benign(0.013) TCGA-EE-A2GR-06 12 4920380 4920380 C T KCNA6 Silent p.S391S 0.46 TCGA-EE-A2GR-06 12 50185643 50185643 G A NCKAP5L Silent p.S1328S 0.44 TCGA-EE-A2GR-06 12 51696470 51696470 C T BIN2 Nonsense_Mutation p.W104* 0.27 TCGA-EE-A2GR-06 12 52714950 52714950 C T KRT83 Missense_Mutation p.G57E 0.47 deleterious(0.02) benign(0.327) TCGA-EE-A2GR-06 12 52776840 52776840 C T KRT84 Silent p.E255E 0.21 TCGA-EE-A2GR-06 12 52944001 52944001 C T KRT71 Silent p.Q156Q 0.27 TCGA-EE-A2GR-06 12 53005026 53005026 G A KRT73 Nonsense_Mutation p.Q358* 0.44 TCGA-EE-A2GR-06 12 53074092 53074092 C T KRT1 Missense_Mutation p.G14E 0.41 deleterious(0.04) unknown(0) TCGA-EE-A2GR-06 12 53293662 53293662 G A KRT8 Missense_Mutation p.A321V 0.39 deleterious(0.02) possibly_damaging(0.89) TCGA-EE-A2GR-06 12 54757412 54757412 G A GPR84 Missense_Mutation p.P75L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 12 54757413 54757413 G A GPR84 Missense_Mutation p.P75S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 12 54925581 54925581 G A NCKAP1L Missense_Mutation p.R918K 0.31 tolerated(0.06) possibly_damaging(0.67) TCGA-EE-A2GR-06 12 54974739 54974739 C T PPP1R1A Missense_Mutation p.G167R 0.30 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-EE-A2GR-06 12 54974740 54974740 C T PPP1R1A Silent p.K166K 0.29 TCGA-EE-A2GR-06 12 55025624 55025624 C G LACRT Splice_Site p.X85_splice 0.36 TCGA-EE-A2GR-06 12 55715295 55715295 G A OR6C1 Silent p.R304R 0.29 TCGA-EE-A2GR-06 12 55715296 55715296 A T OR6C1 Nonsense_Mutation p.K305* 0.27 TCGA-EE-A2GR-06 12 55715321 55715321 G A OR6C1 Silent p.%3D 0.28 TCGA-EE-A2GR-06 12 55795197 55795197 G A OR6C65 Silent p.V295V 0.34 TCGA-EE-A2GR-06 12 56030906 56030906 C T OR10P1 Silent p.I77I 0.68 TCGA-EE-A2GR-06 12 56548888 56548888 C T MYL6B Silent p.I84I 0.44 TCGA-EE-A2GR-06 12 56625336 56625336 C T SLC39A5 Missense_Mutation p.S93F 0.35 tolerated(0.15) benign(0.003) TCGA-EE-A2GR-06 12 57111770 57111770 G A NACA Intron 0.62 TCGA-EE-A2GR-06 12 58221362 58221362 G A CTDSP2 Silent p.L75L 0.50 TCGA-EE-A2GR-06 12 62261101 62261101 C T FAM19A2 Missense_Mutation p.A36T 0.34 tolerated(0.66) benign(0.004) TCGA-EE-A2GR-06 12 6666133 6666133 G A NOP2 3'UTR 0.53 TCGA-EE-A2GR-06 12 6909577 6909577 C T CD4 Missense_Mutation p.H52Y 0.44 tolerated(0.42) benign(0.239) TCGA-EE-A2GR-06 12 6968686 6968686 C T USP5 Nonsense_Mutation p.Q371* 0.46 TCGA-EE-A2GR-06 12 7175788 7175788 C T C1S Silent p.S408S 0.19 TCGA-EE-A2GR-06 12 72338091 72338091 G A TPH2 Missense_Mutation p.M91I 0.64 tolerated(0.34) benign(0.003) TCGA-EE-A2GR-06 12 72338092 72338092 G A TPH2 Missense_Mutation p.V92I 0.66 tolerated(0.38) benign(0.002) TCGA-EE-A2GR-06 12 72338465 72338465 C T TPH2 Missense_Mutation p.P180L 0.59 deleterious(0) probably_damaging(0.948) TCGA-EE-A2GR-06 12 72425098 72425098 G A TPH2 Missense_Mutation p.E409K 0.22 tolerated(0.43) probably_damaging(0.999) TCGA-EE-A2GR-06 12 7360659 7360659 C T PEX5 Silent p.A403A 0.38 TCGA-EE-A2GR-06 12 78582399 78582399 T C NAV3 Missense_Mutation p.F1944S 0.36 tolerated(0.39) possibly_damaging(0.579) TCGA-EE-A2GR-06 12 7966933 7966933 C T SLC2A14 Silent p.K514K 0.73 TCGA-EE-A2GR-06 12 7966960 7966960 C T SLC2A14 Missense_Mutation p.M505I 0.32 tolerated(0.05) benign(0.001) TCGA-EE-A2GR-06 12 8202203 8202203 C T FOXJ2 Intron 0.73 TCGA-EE-A2GR-06 12 85554410 85554410 C T LRRIQ1 Silent p.A1580A 0.65 TCGA-EE-A2GR-06 12 8757408 8757408 G A AICDA Missense_Mutation p.L180F 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GR-06 12 88487599 88487599 G A CEP290 Missense_Mutation p.S1086L 0.52 possibly_damaging(0.726) TCGA-EE-A2GR-06 12 91445206 91445206 G A KERA Missense_Mutation p.R326C 0.46 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GR-06 12 9268505 9268505 C T A2M 5'UTR 0.36 TCGA-EE-A2GR-06 12 9322155 9322155 G A PZP Silent p.T624T 0.45 TCGA-EE-A2GR-06 12 94976051 94976051 G A TMCC3 Silent p.V114V 0.46 TCGA-EE-A2GR-06 12 98928048 98928048 T G TMPO Silent p.T671T 0.31 TCGA-EE-A2GR-06 12 9906184 9906184 A G CD69 Missense_Mutation p.F165L 0.60 tolerated(0.08) benign(0.039) TCGA-EE-A2GR-06 13 100861600 100861600 C T PCCA Silent p.V161V 0.44 TCGA-EE-A2GR-06 13 110823043 110823043 C T COL4A1 Missense_Mutation p.G1198E 0.40 probably_damaging(1) TCGA-EE-A2GR-06 13 19752424 19752424 C T TUBA3C Missense_Mutation p.E113K 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-EE-A2GR-06 13 19997285 19997285 C T TPTE2 Missense_Mutation p.E496K 0.24 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GR-06 13 23913172 23913172 G A SACS Missense_Mutation p.P1615S 0.46 probably_damaging(0.998) TCGA-EE-A2GR-06 13 25374598 25374598 A T RNF17 Missense_Mutation p.T562S 0.51 tolerated(0.17) benign(0) TCGA-EE-A2GR-06 13 25374599 25374599 C T RNF17 Missense_Mutation p.T562I 0.51 tolerated(1) benign(0) TCGA-EE-A2GR-06 13 28830518 28830518 C T PAN3 Missense_Mutation p.P364S 0.45 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A2GR-06 13 28830519 28830519 C T PAN3 Missense_Mutation p.P364L 0.43 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GR-06 13 32367143 32367143 G A RXFP2 Silent p.G568G 0.26 TCGA-EE-A2GR-06 13 33110923 33110923 G A N4BP2L2 Intron 0.48 TCGA-EE-A2GR-06 13 33681014 33681014 C T STARD13 Silent p.E1035E 0.46 TCGA-EE-A2GR-06 13 35615185 35615185 G A NBEA Nonsense_Mutation p.W137* 0.53 TCGA-EE-A2GR-06 13 35758160 35758160 C T NBEA Missense_Mutation p.L1627F 0.28 tolerated_low_confidence(0.21) benign(0.011) TCGA-EE-A2GR-06 13 37453718 37453718 C T SMAD9 Missense_Mutation p.A37T 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 13 37453736 37453736 C T SMAD9 Missense_Mutation p.E31K 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GR-06 13 38211283 38211283 C T TRPC4 Silent p.L902L 0.47 TCGA-EE-A2GR-06 13 38211564 38211564 G A TRPC4 Missense_Mutation p.H809Y 0.49 tolerated_low_confidence(0.31) possibly_damaging(0.514) TCGA-EE-A2GR-06 13 38320325 38320325 G A TRPC4 Missense_Mutation p.P216S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 13 42179406 42179406 C T VWA8 Silent p.K1628K 0.19 TCGA-EE-A2GR-06 13 42876378 42876387 CTCATGCGAT - AKAP11 Frame_Shift_Del p.M1167Ffs*18 0.46 TCGA-EE-A2GR-06 13 51825613 51825613 C T FAM124A Missense_Mutation p.S73F 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 13 77661649 77661649 T C MYCBP2 Silent p.E3577E 0.50 TCGA-EE-A2GR-06 13 78130781 78130781 G A SCEL Missense_Mutation p.E32K 0.23 deleterious(0) possibly_damaging(0.701) TCGA-EE-A2GR-06 13 84454777 84454777 G A SLITRK1 Missense_Mutation p.P289L 0.29 tolerated(0.09) benign(0.017) TCGA-EE-A2GR-06 13 86370584 86370584 G A SLITRK6 Silent p.S20S 0.30 TCGA-EE-A2GR-06 13 95816740 95816740 C T ABCC4 Silent p.E689E 0.41 TCGA-EE-A2GR-06 13 99607748 99607748 T C DOCK9 Missense_Mutation p.T62A 0.44 tolerated(0.4) probably_damaging(0.967) TCGA-EE-A2GR-06 14 100126723 100126723 T A HHIPL1 Silent p.I494I 0.54 TCGA-EE-A2GR-06 14 101521068 101521068 C T MIR134 RNA 0.55 TCGA-EE-A2GR-06 14 102469167 102469167 C T DYNC1H1 Missense_Mutation p.S1583F 0.19 benign(0.02) TCGA-EE-A2GR-06 14 103442121 103442121 C T CDC42BPB Silent p.Q469Q 0.18 TCGA-EE-A2GR-06 14 105752682 105752682 G A BRF1 Silent p.G72G 0.52 TCGA-EE-A2GR-06 14 106110065 106110065 G A IGHG2 Missense_Mutation p.L185F 0.23 deleterious(0.04) possibly_damaging(0.815) TCGA-EE-A2GR-06 14 106110066 106110066 G A IGHG2 Silent p.V184V 0.23 TCGA-EE-A2GR-06 14 106236270 106236270 C T IGHG3 Missense_Mutation p.D179N 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 14 106963032 106963032 G A IGHV1-45 Nonsense_Mutation p.Q84* 0.50 TCGA-EE-A2GR-06 14 106963163 106963163 G A IGHV1-45 Missense_Mutation p.S40F 0.21 deleterious(0.02) probably_damaging(0.922) TCGA-EE-A2GR-06 14 106967498 106967498 C T IGHV1-46 5'UTR 0.24 TCGA-EE-A2GR-06 14 107282946 107282946 C T IGHV7-81 Nonsense_Mutation p.W66* 0.34 TCGA-EE-A2GR-06 14 20248889 20248889 G A OR4M1 Missense_Mutation p.M136I 0.21 deleterious(0.01) benign(0.056) TCGA-EE-A2GR-06 14 20295728 20295728 G A OR4N2 Missense_Mutation p.G41R 0.18 deleterious(0.01) benign(0.12) TCGA-EE-A2GR-06 14 20295843 20295843 C T OR4N2 Missense_Mutation p.P79L 0.15 deleterious(0.01) possibly_damaging(0.452) TCGA-EE-A2GR-06 14 20388834 20388834 C T OR4K5 Silent p.L23L 0.14 TCGA-EE-A2GR-06 14 20388835 20388835 C T OR4K5 Nonsense_Mutation p.Q24* 0.12 TCGA-EE-A2GR-06 14 20444368 20444368 T C OR4K15 Missense_Mutation p.S231P 0.47 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GR-06 14 20502702 20502702 G A OR4K13 Silent p.I72I 0.26 TCGA-EE-A2GR-06 14 20711059 20711059 C T OR11H4 Missense_Mutation p.L37F 0.17 tolerated(0.11) benign(0.101) TCGA-EE-A2GR-06 14 21469567 21469567 G A SLC39A2 Silent p.G253G 0.45 TCGA-EE-A2GR-06 14 21870115 21870115 C T CHD8 Splice_Site p.X1354_splice 0.22 TCGA-EE-A2GR-06 14 22675459 22675459 G A TRAV34 Silent p.G10G 0.24 TCGA-EE-A2GR-06 14 23395485 23395485 G A PRMT5 Missense_Mutation p.L212F 0.40 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GR-06 14 23395486 23395486 G A PRMT5 Silent p.D211D 0.38 TCGA-EE-A2GR-06 14 23517611 23517611 C T CDH24 Missense_Mutation p.E680K 0.15 deleterious(0) possibly_damaging(0.672) TCGA-EE-A2GR-06 14 23897062 23897062 G A MYH7 Silent p.F540F 0.44 TCGA-EE-A2GR-06 14 24884876 24884876 C T NYNRIN Silent p.F1307F 0.29 TCGA-EE-A2GR-06 14 24896912 24896912 C T CBLN3 3'UTR 0.17 TCGA-EE-A2GR-06 14 31570189 31570189 T A HECTD1 Missense_Mutation p.M2594L 0.45 tolerated(1) possibly_damaging(0.685) TCGA-EE-A2GR-06 14 36244917 36244917 G A RALGAPA1 Silent p.F47F 0.18 TCGA-EE-A2GR-06 14 38678738 38678738 C - SSTR1 Frame_Shift_Del p.N48Kfs*4 0.36 TCGA-EE-A2GR-06 14 45537771 45537771 A T FAM179B Missense_Mutation p.N1579Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 14 45636355 45636355 C T FANCM Missense_Mutation p.S664F 0.18 tolerated(0.06) benign(0.189) TCGA-EE-A2GR-06 14 50092606 50092606 C T DNAAF2 Missense_Mutation p.G723D 0.38 tolerated(0.1) benign(0.037) TCGA-EE-A2GR-06 14 50092607 50092607 C T DNAAF2 Missense_Mutation p.G723S 0.37 tolerated(0.1) benign(0.123) TCGA-EE-A2GR-06 14 50844369 50844372 GCCC AGCCA CDKL1 Intron 0.14 TCGA-EE-A2GR-06 14 51352526 51352526 C T ABHD12B Missense_Mutation p.T192I 0.21 deleterious(0.02) possibly_damaging(0.895) TCGA-EE-A2GR-06 14 51464700 51464700 C T TRIM9 Intron 0.50 TCGA-EE-A2GR-06 14 51492019 51492019 A C TRIM9 Missense_Mutation p.F294L 0.41 tolerated(0.13) benign(0.023) TCGA-EE-A2GR-06 14 52433367 52433367 C T GNG2 Missense_Mutation p.P60S 0.22 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GR-06 14 52794146 52794146 G A PTGER2 Missense_Mutation p.D351N 0.34 tolerated(1) benign(0) TCGA-EE-A2GR-06 14 57268592 57268592 C T OTX2 Missense_Mutation p.G252E 0.54 deleterious(0.01) benign(0.424) TCGA-EE-A2GR-06 14 58605246 58605246 G A C14orf37 Silent p.S277S 0.26 TCGA-EE-A2GR-06 14 60928270 60928270 T G C14orf39 Silent p.S338S 0.37 TCGA-EE-A2GR-06 14 64408603 64408603 C T SYNE2 Missense_Mutation p.P80S 0.43 probably_damaging(0.999) TCGA-EE-A2GR-06 14 64450546 64450546 T A SYNE2 Missense_Mutation p.V698D 0.50 possibly_damaging(0.65) TCGA-EE-A2GR-06 14 65266488 65266488 G A SPTB Silent p.Y347Y 0.21 TCGA-EE-A2GR-06 14 65270481 65270481 C T SPTB Silent p.G106G 0.43 TCGA-EE-A2GR-06 14 70515704 70515704 G A SLC8A3 Silent p.D729D 0.50 TCGA-EE-A2GR-06 14 70634318 70634318 G A SLC8A3 Silent p.I274I 0.27 TCGA-EE-A2GR-06 14 72055512 72055512 G A SIPA1L1 Missense_Mutation p.G308E 0.46 tolerated(0.15) benign(0.122) TCGA-EE-A2GR-06 14 73578359 73578359 C T RBM25 Missense_Mutation p.P714L 0.35 possibly_damaging(0.713) TCGA-EE-A2GR-06 14 74500775 74500775 C T CCDC176 Silent p.F132F 0.34 TCGA-EE-A2GR-06 14 74825503 74825503 G A VRTN Missense_Mutation p.E673K 0.61 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 14 77255562 77255562 G A ANGEL1 3'UTR 0.46 TCGA-EE-A2GR-06 14 88652148 88652148 T C KCNK10 Missense_Mutation p.T455A 0.54 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GR-06 14 92473984 92473984 C G TRIP11 Missense_Mutation p.K509N 0.42 deleterious(0.01) possibly_damaging(0.561) TCGA-EE-A2GR-06 14 94044228 94044228 A T UNC79 Missense_Mutation p.N574I 0.47 deleterious(0.03) benign(0.203) TCGA-EE-A2GR-06 14 94046585 94046585 C T UNC79 Missense_Mutation p.P665S 0.53 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GR-06 14 94089130 94089130 G A UNC79 Missense_Mutation p.E1674K 0.17 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-EE-A2GR-06 14 94120150 94120150 A G UNC79 Missense_Mutation p.Q1911R 0.49 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A2GR-06 14 94395130 94395130 G A FAM181A Missense_Mutation p.G229S 0.22 tolerated(0.3) benign(0.015) TCGA-EE-A2GR-06 14 94772500 94772500 C T SERPINA6 Missense_Mutation p.D314N 0.23 tolerated(0.79) benign(0.017) TCGA-EE-A2GR-06 14 94912776 94912776 C T SERPINA11 Missense_Mutation p.G270E 0.30 tolerated(0.08) possibly_damaging(0.838) TCGA-EE-A2GR-06 14 94931130 94931130 G A SERPINA9 Missense_Mutation p.L340F 0.21 tolerated(0.44) probably_damaging(0.999) TCGA-EE-A2GR-06 14 96180341 96180341 C T TCL1A Nonsense_Mutation p.W21* 0.36 TCGA-EE-A2GR-06 14 96706575 96706575 G A BDKRB2 Intron 0.18 TCGA-EE-A2GR-06 14 96864488 96864488 C T AK7 Missense_Mutation p.S61L 0.43 tolerated(0.15) benign(0.002) TCGA-EE-A2GR-06 15 100331320 100331320 G A AC090825.1 5'Flank 0.21 TCGA-EE-A2GR-06 15 100871156 100871156 G A ADAMTS17 Missense_Mutation p.S185F 0.42 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2GR-06 15 20170023 20170023 G A IGHV1OR15-9 Silent p.F83F 0.20 TCGA-EE-A2GR-06 15 22382676 22382676 C T OR4N4 Silent p.F68F 0.12 TCGA-EE-A2GR-06 15 22382790 22382790 C T OR4N4 Silent p.F106F 0.76 TCGA-EE-A2GR-06 15 22709030 22709030 C T AC116165.1 5'Flank 0.55 TCGA-EE-A2GR-06 15 24923506 24923506 C T NPAP1 Missense_Mutation p.S831F 0.47 tolerated(0.19) probably_damaging(0.955) TCGA-EE-A2GR-06 15 25924899 25924899 G A ATP10A Silent p.S1363S 0.38 TCGA-EE-A2GR-06 15 30058537 30058537 C T TJP1 Missense_Mutation p.R174Q 0.21 deleterious(0.03) benign(0.266) TCGA-EE-A2GR-06 15 31339375 31339375 C T TRPM1 Missense_Mutation p.R585H 0.46 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 15 33359221 33359222 CG A FMN1 Frame_Shift_Del p.A289Lfs*17 0.36 TCGA-EE-A2GR-06 15 35045085 35045085 G A GJD2 Missense_Mutation p.S187F 0.43 tolerated(0.1) benign(0.15) TCGA-EE-A2GR-06 15 37187014 37187014 C T MEIS2 Intron 0.50 TCGA-EE-A2GR-06 15 39910064 39910064 G A FSIP1 Missense_Mutation p.S524L 0.23 tolerated(0.07) benign(0.062) TCGA-EE-A2GR-06 15 40659789 40659789 C T DISP2 Silent p.P492P 0.47 TCGA-EE-A2GR-06 15 40703543 40703543 G A IVD Missense_Mutation p.E184K 0.50 tolerated(0.07) benign(0.004) TCGA-EE-A2GR-06 15 41348837 41348837 G A INO80 Nonsense_Mutation p.Q685* 0.42 TCGA-EE-A2GR-06 15 41571595 41571595 C T CHP1 3'UTR 0.48 TCGA-EE-A2GR-06 15 42000029 42000029 C T MGA Silent p.N764N 0.15 TCGA-EE-A2GR-06 15 42000030 42000030 C T MGA Missense_Mutation p.L765F 0.15 tolerated(0.34) benign(0.005) TCGA-EE-A2GR-06 15 42178457 42178457 C T SPTBN5 Silent p.R332R 0.54 TCGA-EE-A2GR-06 15 42743992 42743992 C T ZNF106 Missense_Mutation p.D137N 0.45 tolerated(0.07) possibly_damaging(0.735) TCGA-EE-A2GR-06 15 43572089 43572089 C A TGM7 Missense_Mutation p.R471I 0.45 deleterious(0.03) benign(0.395) TCGA-EE-A2GR-06 15 43816167 43816167 C T MAP1A Silent p.I832I 0.38 TCGA-EE-A2GR-06 15 44181045 44181045 C T FRMD5 Missense_Mutation p.E252K 0.18 deleterious(0) probably_damaging(0.942) TCGA-EE-A2GR-06 15 48434574 48434574 A C MYEF2 3'UTR 0.42 TCGA-EE-A2GR-06 15 48539563 48539563 C T SLC12A1 Silent p.A530A 0.43 TCGA-EE-A2GR-06 15 50399151 50399151 C T ATP8B4 Missense_Mutation p.E5K 0.45 tolerated(0.82) benign(0) TCGA-EE-A2GR-06 15 50474704 50474704 T A SLC27A2 Missense_Mutation p.F27Y 0.32 deleterious(0.03) benign(0.042) TCGA-EE-A2GR-06 15 51742485 51742485 G A DMXL2 Silent p.L2915L 0.20 TCGA-EE-A2GR-06 15 52664450 52664450 G A MYO5A Silent p.F896F 0.36 TCGA-EE-A2GR-06 15 53889321 53889321 C T WDR72 Missense_Mutation p.E1035K 0.19 tolerated(0.19) benign(0.008) TCGA-EE-A2GR-06 15 54306001 54306001 G A UNC13C Missense_Mutation p.E301K 0.41 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-EE-A2GR-06 15 57731401 57731401 G A CGNL1 Missense_Mutation p.E402K 0.57 tolerated(0.26) benign(0.269) TCGA-EE-A2GR-06 15 57753911 57753911 C T CGNL1 Silent p.L742L 0.25 TCGA-EE-A2GR-06 15 59499502 59499502 G A LDHAL6B Silent p.T121T 0.24 TCGA-EE-A2GR-06 15 62214170 62214172 CTT TA VPS13C Frame_Shift_Del p.K2346* 0.37 TCGA-EE-A2GR-06 15 63433670 63433670 C T LACTB Missense_Mutation p.P437L 0.24 deleterious(0.01) possibly_damaging(0.867) TCGA-EE-A2GR-06 15 64200735 64200735 C T DAPK2 Missense_Mutation p.R366K 0.50 tolerated(0.22) benign(0.055) TCGA-EE-A2GR-06 15 67649700 67649700 C T IQCH Missense_Mutation p.R219W 0.49 deleterious(0.01) benign(0.292) TCGA-EE-A2GR-06 15 69335131 69335131 C T NOX5 Nonsense_Mutation p.Q545* 0.47 TCGA-EE-A2GR-06 15 70960839 70960839 G A UACA Silent p.L728L 0.46 TCGA-EE-A2GR-06 15 72141213 72141213 G A MYO9A Silent p.T2270T 0.17 TCGA-EE-A2GR-06 15 75676624 75676624 G A SIN3A Missense_Mutation p.S1059L 0.28 deleterious(0.01) benign(0.033) TCGA-EE-A2GR-06 15 76496597 76496597 G A C15orf27 Missense_Mutation p.D513N 0.26 deleterious_low_confidence(0) benign(0.067) TCGA-EE-A2GR-06 15 79350700 79350700 G A RASGRF1 Silent p.I169I 0.60 TCGA-EE-A2GR-06 15 81230231 81230231 G A KIAA1199 Silent p.K1106K 0.42 TCGA-EE-A2GR-06 15 84581953 84581953 C T ADAMTSL3 Silent p.L604L 0.26 TCGA-EE-A2GR-06 15 85341835 85341835 C T ZNF592 Missense_Mutation p.P918L 0.14 tolerated(0.71) probably_damaging(0.999) TCGA-EE-A2GR-06 15 85341836 85341836 C T ZNF592 Silent p.P918P 0.15 TCGA-EE-A2GR-06 15 89402194 89402194 C T ACAN Silent p.S2126S 0.19 TCGA-EE-A2GR-06 15 90210242 90210242 C T PLIN1 Silent p.G378G 0.21 TCGA-EE-A2GR-06 15 91147627 91147627 C T CRTC3 Missense_Mutation p.P142S 0.18 deleterious(0.04) benign(0.009) TCGA-EE-A2GR-06 15 91147628 91147628 C T CRTC3 Missense_Mutation p.P142L 0.18 deleterious(0.03) benign(0.003) TCGA-EE-A2GR-06 15 93486111 93486111 A T CHD2 Missense_Mutation p.N289Y 0.35 tolerated(0.05) benign(0.348) TCGA-EE-A2GR-06 15 94928667 94928667 C T MCTP2 Silent p.I567I 0.50 TCGA-EE-A2GR-06 15 99670365 99670365 G A SYNM Silent p.V599V 0.47 TCGA-EE-A2GR-06 16 10032408 10032408 C T GRIN2A Missense_Mutation p.D139N 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 16 10524750 10524750 C A ATF7IP2 Missense_Mutation p.F91L 0.47 tolerated(0.1) benign(0.009) TCGA-EE-A2GR-06 16 12798701 12798701 G A CPPED1 Silent p.S165S 0.59 TCGA-EE-A2GR-06 16 1291287 1291287 C T TPSAB1 Silent p.H65H 0.13 TCGA-EE-A2GR-06 16 1505732 1505732 G A CLCN7 Silent p.I327I 0.12 TCGA-EE-A2GR-06 16 1545618 1545618 C T TELO2 Missense_Mutation p.L203F 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 16 16177228 16177228 C T ABCC1 Silent p.S707S 0.38 TCGA-EE-A2GR-06 16 16267254 16267254 T A ABCC6 Nonsense_Mutation p.K892* 0.51 TCGA-EE-A2GR-06 16 19033066 19033066 G A TMC7 Silent p.T192T 0.51 TCGA-EE-A2GR-06 16 19236122 19236122 C T SYT17 Missense_Mutation p.P397L 0.34 deleterious(0) possibly_damaging(0.6) TCGA-EE-A2GR-06 16 20422863 20422863 C T ACSM5 Silent p.F19F 0.44 TCGA-EE-A2GR-06 16 20975320 20975320 G A DNAH3 Missense_Mutation p.P3296S 0.47 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GR-06 16 20976520 20976520 G A DNAH3 Missense_Mutation p.R2896C 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GR-06 16 21011706 21011706 G A DNAH3 Silent p.F2087F 0.51 TCGA-EE-A2GR-06 16 21098222 21098222 G A DNAH3 Missense_Mutation p.P942L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 16 21698771 21698771 G A OTOA Missense_Mutation p.R146Q 0.46 tolerated(0.08) benign(0.18) TCGA-EE-A2GR-06 16 24802181 24802181 C T TNRC6A Missense_Mutation p.P740S 0.28 tolerated(0.14) benign(0.032) TCGA-EE-A2GR-06 16 24802182 24802182 C T TNRC6A Missense_Mutation p.P740L 0.29 deleterious(0) benign(0.4) TCGA-EE-A2GR-06 16 24909426 24909426 C T SLC5A11 Silent p.F334F 0.54 TCGA-EE-A2GR-06 16 27460580 27460580 G A IL21R Silent p.S531S 0.37 TCGA-EE-A2GR-06 16 27475784 27475784 G A GTF3C1 Missense_Mutation p.P1910L 0.53 tolerated(0.81) benign(0.001) TCGA-EE-A2GR-06 16 27497466 27497466 G A GTF3C1 Missense_Mutation p.P1237L 0.46 tolerated(0.17) benign(0.282) TCGA-EE-A2GR-06 16 28118941 28118941 G A XPO6 Missense_Mutation p.S800L 0.42 deleterious(0.01) possibly_damaging(0.605) TCGA-EE-A2GR-06 16 28488892 28488892 G A CLN3 Missense_Mutation p.S421F 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 16 28617456 28617456 C T SULT1A1 Missense_Mutation p.M232I 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 16 28847592 28847592 C T ATXN2L Intron 0.21 TCGA-EE-A2GR-06 16 28948809 28948809 C T CD19 Missense_Mutation p.P446L 0.41 tolerated(0.34) probably_damaging(0.991) TCGA-EE-A2GR-06 16 2987337 2987337 C T FLYWCH1 Silent p.L576L 0.45 TCGA-EE-A2GR-06 16 30035536 30035536 G A C16orf92 Silent p.Q129Q 0.44 TCGA-EE-A2GR-06 16 30518142 30518142 C T ITGAL Missense_Mutation p.P825S 0.24 tolerated(0.69) benign(0.016) TCGA-EE-A2GR-06 16 30764754 30764754 C T PHKG2 Silent p.L144L 0.50 TCGA-EE-A2GR-06 16 30785475 30785475 G A RNF40 3'UTR 0.79 TCGA-EE-A2GR-06 16 30964558 30964558 T C ORAI3 Missense_Mutation p.L94P 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 16 3406326 3406326 C T OR2C1 Missense_Mutation p.P129L 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 16 3613758 3613758 G T NLRC3 Missense_Mutation p.R441S 0.53 deleterious(0) possibly_damaging(0.54) TCGA-EE-A2GR-06 16 3633161 3633161 G A SLX4 Missense_Mutation p.P1697L 0.19 tolerated(0.1) possibly_damaging(0.723) TCGA-EE-A2GR-06 16 3819272 3819272 G A CREBBP Missense_Mutation p.P988L 0.46 unknown(0) TCGA-EE-A2GR-06 16 4393215 4393215 C G PAM16 Missense_Mutation p.E27D 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2GR-06 16 46746678 46746678 G A MYLK3 Nonsense_Mutation p.R666* 0.19 TCGA-EE-A2GR-06 16 46763013 46763013 G A MYLK3 Silent p.N565N 0.44 TCGA-EE-A2GR-06 16 46771661 46771661 C T MYLK3 Silent p.Q321Q 0.25 TCGA-EE-A2GR-06 16 46952658 46952658 C T GPT2 Silent p.G342G 0.15 TCGA-EE-A2GR-06 16 47005416 47005419 GTAT TAA DNAJA2 Frame_Shift_Del p.R68Sfs*2 0.23 TCGA-EE-A2GR-06 16 48130780 48130780 C T ABCC12 Nonsense_Mutation p.W1024* 0.23 TCGA-EE-A2GR-06 16 50349029 50349029 G A ADCY7 Missense_Mutation p.G1026R 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 16 5053420 5053420 T A SEC14L5 Missense_Mutation p.L383Q 0.33 deleterious(0) possibly_damaging(0.722) TCGA-EE-A2GR-06 16 5057422 5057422 G A SEC14L5 Missense_Mutation p.D503N 0.54 tolerated(0.05) benign(0.196) TCGA-EE-A2GR-06 16 55361545 55361545 C T IRX6 Missense_Mutation p.T154I 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 16 55361546 55361546 C T IRX6 Silent p.T154T 0.26 TCGA-EE-A2GR-06 16 55862792 55862792 G A CES1 Silent p.A49A 0.19 TCGA-EE-A2GR-06 16 55893542 55893542 C T CES5A Missense_Mutation p.D354N 0.42 deleterious(0.01) benign(0.026) TCGA-EE-A2GR-06 16 56370700 56370700 G A GNAO1 Silent p.E217E 0.33 TCGA-EE-A2GR-06 16 56901088 56901088 C T SLC12A3 Missense_Mutation p.P130L 0.50 tolerated(0.07) benign(0.003) TCGA-EE-A2GR-06 16 56947280 56947280 G A SLC12A3 Missense_Mutation p.G1019E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 16 57009057 57009057 C T CETP Silent p.F325F 0.46 TCGA-EE-A2GR-06 16 57060583 57060583 C T NLRC5 Silent p.F576F 0.48 TCGA-EE-A2GR-06 16 57153179 57153179 C T CPNE2 Missense_Mutation p.H194Y 0.47 tolerated(0.37) benign(0.362) TCGA-EE-A2GR-06 16 61687684 61687684 G A CDH8 Missense_Mutation p.S743F 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 16 65016088 65016088 G A CDH11 Silent p.I372I 0.45 TCGA-EE-A2GR-06 16 66424444 66424444 C T CDH5 Missense_Mutation p.T307I 0.21 tolerated(0.12) benign(0.034) TCGA-EE-A2GR-06 16 66946255 66946255 C T CDH16 Missense_Mutation p.E480K 0.41 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A2GR-06 16 67241580 67241580 T C LRRC29 Silent p.Q200Q 0.43 TCGA-EE-A2GR-06 16 67763906 67763906 G A RANBP10 Silent p.I311I 0.38 TCGA-EE-A2GR-06 16 68156670 68156670 C T NFATC3 Missense_Mutation p.P295L 0.21 deleterious(0.01) benign(0.158) TCGA-EE-A2GR-06 16 68835619 68835619 C T CDH1 Silent p.S70S 0.24 TCGA-EE-A2GR-06 16 69368747 69368747 G A RP11-343C2.12 Missense_Mutation p.R10W 0.53 deleterious(0) possibly_damaging(0.567) TCGA-EE-A2GR-06 16 69965070 69965070 C T WWP2 Silent p.S487S 0.42 TCGA-EE-A2GR-06 16 700291 700291 T G WDR90 Missense_Mutation p.F106C 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 16 70731086 70731086 G A VAC14 Silent p.F637F 0.32 TCGA-EE-A2GR-06 16 70942619 70942619 G A HYDIN Missense_Mutation p.S2717F 0.28 benign(0.071) TCGA-EE-A2GR-06 16 70954575 70954575 G A HYDIN Silent p.F2568F 0.60 TCGA-EE-A2GR-06 16 71012907 71012907 C T HYDIN Silent p.R1516R 0.18 TCGA-EE-A2GR-06 16 71571069 71571069 G A CHST4 Silent p.V163V 0.52 TCGA-EE-A2GR-06 16 71701093 71701093 G A PHLPP2 Missense_Mutation p.S591F 0.45 tolerated(0.26) benign(0.006) TCGA-EE-A2GR-06 16 72822397 72822397 C T ZFHX3 Missense_Mutation p.E3260K 0.28 unknown(0) TCGA-EE-A2GR-06 16 72822404 72822404 G A ZFHX3 Silent p.P3257P 0.43 TCGA-EE-A2GR-06 16 74695200 74695200 G A RFWD3 Missense_Mutation p.P50S 0.21 tolerated_low_confidence(0.11) benign(0.258) TCGA-EE-A2GR-06 16 747067 747067 C T FBXL16 Silent p.E113E 0.57 TCGA-EE-A2GR-06 16 74949875 74949875 G A WDR59 Missense_Mutation p.P373S 0.48 tolerated(0.43) benign(0) TCGA-EE-A2GR-06 16 81303925 81303925 C T BCMO1 Silent p.F335F 0.59 TCGA-EE-A2GR-06 16 81962178 81962178 C T PLCG2 Missense_Mutation p.P844S 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GR-06 16 81971415 81971415 C T PLCG2 Silent p.G1035G 0.44 TCGA-EE-A2GR-06 16 83992977 83992977 C T OSGIN1 Silent p.A60A 0.33 TCGA-EE-A2GR-06 16 83994350 83994350 C T OSGIN1 Silent p.P127P 0.48 TCGA-EE-A2GR-06 16 83998800 83998800 C G OSGIN1 Missense_Mutation p.P208A 0.60 tolerated(0.33) benign(0.047) TCGA-EE-A2GR-06 16 84224962 84224962 C T ADAD2 Silent p.A42A 0.38 TCGA-EE-A2GR-06 16 84474529 84474529 G A ATP2C2 Missense_Mutation p.E426K 0.61 tolerated(0.62) benign(0.012) TCGA-EE-A2GR-06 16 84482226 84482226 C T ATP2C2 Missense_Mutation p.P531S 0.39 tolerated(0.11) benign(0.103) TCGA-EE-A2GR-06 16 84690691 84690691 C T KLHL36 Missense_Mutation p.S93F 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 16 86544757 86544757 G A FOXF1 Missense_Mutation p.M194I 0.54 tolerated(0.1) benign(0.001) TCGA-EE-A2GR-06 16 8738530 8738530 C T METTL22 Missense_Mutation p.P376L 0.33 tolerated(0.07) benign(0.013) TCGA-EE-A2GR-06 16 88599105 88599105 G A ZFPM1 Missense_Mutation p.D344N 0.56 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2GR-06 16 9916248 9916248 G A GRIN2A Nonsense_Mutation p.R681* 0.34 TCGA-EE-A2GR-06 17 10323467 10323467 C T MYH8 Silent p.R26R 0.30 TCGA-EE-A2GR-06 17 10323571 10323571 C T MYH8 5'UTR 0.23 TCGA-EE-A2GR-06 17 10358975 10358975 C T MYH4 Silent p.R710R 0.24 TCGA-EE-A2GR-06 17 10395837 10395837 C T MYH1 Missense_Mutation p.E1906K 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2GR-06 17 10415480 10415480 G A MYH1 Silent p.L393L 0.22 TCGA-EE-A2GR-06 17 10432487 10432487 C T MYH2 Missense_Mutation p.E1116K 0.14 deleterious(0.04) probably_damaging(1) TCGA-EE-A2GR-06 17 11572944 11572944 C T DNAH9 Silent p.I1062I 0.22 TCGA-EE-A2GR-06 17 11737988 11737988 G A DNAH9 Missense_Mutation p.E3094K 0.59 benign(0.445) TCGA-EE-A2GR-06 17 12899064 12899064 G A ELAC2 Silent p.L588L 0.41 TCGA-EE-A2GR-06 17 15604486 15604486 C T ZNF286A Missense_Mutation p.P20S 0.24 tolerated(0.83) benign(0.001) TCGA-EE-A2GR-06 17 16340158 16340158 C A TRPV2 Silent p.A750A 0.48 TCGA-EE-A2GR-06 17 17921864 17921864 C A ATPAF2 Nonstop_Mutation p.*290Lext*10 0.23 TCGA-EE-A2GR-06 17 18025694 18025694 G A MYO15A Missense_Mutation p.E1194K 0.44 unknown(0) TCGA-EE-A2GR-06 17 18967247 18967247 G A SNORD3B-2 RNA 0.22 TCGA-EE-A2GR-06 17 19091531 19091531 C T SNORD3A RNA 0.14 TCGA-EE-A2GR-06 17 19237289 19237289 C T EPN2 Missense_Mutation p.P550S 0.19 tolerated(0.08) benign(0.264) TCGA-EE-A2GR-06 17 26096159 26096159 G A NOS2 Silent p.L626L 0.44 TCGA-EE-A2GR-06 17 26696596 26696596 T C VTN Missense_Mutation p.E154G 0.50 deleterious(0) probably_damaging(0.937) TCGA-EE-A2GR-06 17 26696597 26696597 C T VTN Missense_Mutation p.E154K 0.50 deleterious(0.02) possibly_damaging(0.566) TCGA-EE-A2GR-06 17 27380467 27380467 G A PIPOX Missense_Mutation p.G172R 0.23 deleterious(0) benign(0.308) TCGA-EE-A2GR-06 17 27380468 27380468 G A PIPOX Missense_Mutation p.G172E 0.21 tolerated(0.14) benign(0.295) TCGA-EE-A2GR-06 17 27893587 27893587 C T ABHD15 Missense_Mutation p.G133E 0.47 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 17 27893588 27893588 C T ABHD15 Missense_Mutation p.G133R 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 17 27958398 27958398 G A SSH2 Nonsense_Mutation p.Q1245* 0.49 TCGA-EE-A2GR-06 17 29233259 29233259 C T TEFM 5'UTR 0.51 TCGA-EE-A2GR-06 17 29528134 29528141 TTTCTTGC - NF1 Frame_Shift_Del p.C383Yfs*10 0.45 TCGA-EE-A2GR-06 17 29683977 29683977 G A NF1 Splice_Site p.X2580_splice 0.43 TCGA-EE-A2GR-06 17 32962035 32962035 G A TMEM132E Missense_Mutation p.D546N 0.50 tolerated(0.1) probably_damaging(0.932) TCGA-EE-A2GR-06 17 33520283 33520283 C T SLC35G3 3'UTR 0.26 TCGA-EE-A2GR-06 17 33772415 33772415 G A SLFN13 Silent p.F95F 0.58 TCGA-EE-A2GR-06 17 3846787 3846787 C T ATP2A3 Silent p.E439E 0.43 TCGA-EE-A2GR-06 17 3850765 3850765 C T ATP2A3 Missense_Mutation p.V339M 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 17 38813978 38813978 C T KRT222 Silent p.G157G 0.22 TCGA-EE-A2GR-06 17 39123069 39123069 T C KRT39 Missense_Mutation p.T14A 0.48 tolerated(0.37) benign(0.011) TCGA-EE-A2GR-06 17 39506842 39506842 T G KRT33A Missense_Mutation p.M60L 0.48 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A2GR-06 17 39506882 39506882 C A KRT33A Missense_Mutation p.W46C 0.35 deleterious(0.02) benign(0.112) TCGA-EE-A2GR-06 17 39566105 39566105 C T AC003958.2 RNA 0.50 TCGA-EE-A2GR-06 17 39637161 39637161 G A KRT35 Silent p.A63A 0.25 TCGA-EE-A2GR-06 17 39670435 39670435 G A KRT15 Intron 0.56 TCGA-EE-A2GR-06 17 39726464 39726464 G A KRT9 Silent p.D217D 0.52 TCGA-EE-A2GR-06 17 39775769 39775769 G A KRT17 3'UTR 0.29 TCGA-EE-A2GR-06 17 40928268 40928268 C T VPS25 Silent p.S116S 0.19 TCGA-EE-A2GR-06 17 41063431 41063431 G A G6PC Silent p.K354K 0.21 TCGA-EE-A2GR-06 17 41177998 41177998 G A RND2 Missense_Mutation p.E42K 0.46 deleterious(0) benign(0.261) TCGA-EE-A2GR-06 17 43333173 43333173 G A SPATA32 Missense_Mutation p.P126S 0.46 tolerated(0.61) benign(0) TCGA-EE-A2GR-06 17 43364706 43364706 G A MAP3K14 RNA 0.15 TCGA-EE-A2GR-06 17 43907558 43907558 C T CRHR1 Missense_Mutation p.P207L 0.30 tolerated(0.65) benign(0.006) TCGA-EE-A2GR-06 17 43923981 43923981 G A SPPL2C Missense_Mutation p.G570E 0.55 tolerated_low_confidence(0.19) benign(0.013) TCGA-EE-A2GR-06 17 44950042 44950042 G A WNT9B Silent p.R79R 0.52 TCGA-EE-A2GR-06 17 46474139 46474139 C T SKAP1 Missense_Mutation p.E19K 0.22 tolerated(0.47) benign(0.021) TCGA-EE-A2GR-06 17 46622015 46622015 G A HOXB2 Missense_Mutation p.P87S 0.43 tolerated(0.19) benign(0.007) TCGA-EE-A2GR-06 17 46627651 46627651 C T HOXB3 3'UTR 0.29 TCGA-EE-A2GR-06 17 47118857 47118857 C T IGF2BP1 Silent p.I312I 0.42 TCGA-EE-A2GR-06 17 48613881 48613881 G A EPN3 5'UTR 0.23 TCGA-EE-A2GR-06 17 48632997 48632998 GA T SPATA20 Frame_Shift_Del p.E795Yfs*25 0.35 TCGA-EE-A2GR-06 17 48633037 48633037 C T SPATA20 3'UTR 0.36 TCGA-EE-A2GR-06 17 48745329 48745329 C T ABCC3 Missense_Mutation p.P581S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GR-06 17 5042908 5042908 C T USP6 Silent p.V479V 0.21 TCGA-EE-A2GR-06 17 54892252 54892252 C T C17orf67 Missense_Mutation p.G45E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 17 56281790 56281790 C T EPX 3'UTR 0.29 TCGA-EE-A2GR-06 17 56386733 56386733 G A BZRAP1 Silent p.P1300P 0.24 TCGA-EE-A2GR-06 17 56435835 56435835 G A RNF43 Silent p.P434P 0.26 TCGA-EE-A2GR-06 17 56536308 56536308 T A HSF5 Splice_Site p.X515_splice 0.58 TCGA-EE-A2GR-06 17 56585613 56585613 T C MTMR4 Missense_Mutation p.K192E 0.30 tolerated(0.41) possibly_damaging(0.842) TCGA-EE-A2GR-06 17 56599151 56599151 G A SEPT4 Silent p.I302I 0.35 TCGA-EE-A2GR-06 17 57274954 57274954 G A CTD-2510F5.6 Missense_Mutation p.D10N 0.26 tolerated_low_confidence(0.9) benign(0.003) TCGA-EE-A2GR-06 17 57758365 57758365 C T CLTC Silent p.L1004L 0.36 TCGA-EE-A2GR-06 17 59667908 59667908 C T NACA2 Missense_Mutation p.E212K 0.17 deleterious(0.02) possibly_damaging(0.636) TCGA-EE-A2GR-06 17 61396398 61396398 A G TANC2 Missense_Mutation p.T434A 0.25 tolerated(0.07) benign(0.05) TCGA-EE-A2GR-06 17 61560476 61560476 G A ACE Missense_Mutation p.G477R 0.11 tolerated(0.78) benign(0.236) TCGA-EE-A2GR-06 17 61611254 61611254 C T KCNH6 Missense_Mutation p.S228F 0.18 tolerated(0.07) possibly_damaging(0.841) TCGA-EE-A2GR-06 17 61657259 61657259 C T DCAF7 Intron 0.32 TCGA-EE-A2GR-06 17 61888459 61888459 C T DDX42 Missense_Mutation p.R442W 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 17 61902618 61902624 GATCTCT - FTSJ3 Frame_Shift_Del p.E192Lfs*2 0.56 TCGA-EE-A2GR-06 17 61907655 61907655 C T PSMC5 Silent p.L116L 0.32 TCGA-EE-A2GR-06 17 61949534 61949534 G A CSH2 Silent p.F202F 0.26 TCGA-EE-A2GR-06 17 62130643 62130643 G A ERN1 Missense_Mutation p.S681F 0.17 deleterious(0) possibly_damaging(0.741) TCGA-EE-A2GR-06 17 62462587 62462587 C T MILR1 Silent p.S40S 0.52 TCGA-EE-A2GR-06 17 62801116 62801116 G A PLEKHM1P RNA 0.20 TCGA-EE-A2GR-06 17 62856890 62856890 G A LRRC37A3 Missense_Mutation p.P1125L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 17 62968738 62968738 G A AMZ2P1 RNA 0.71 TCGA-EE-A2GR-06 17 64637512 64637512 G A PRKCA Missense_Mutation p.G110R 0.30 tolerated(0.13) possibly_damaging(0.631) TCGA-EE-A2GR-06 17 64637530 64637530 G A PRKCA Missense_Mutation p.D116N 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 17 64873459 64873459 C T CACNG5 Silent p.A3A 0.57 TCGA-EE-A2GR-06 17 64881222 64881222 C T CACNG5 Silent p.F231F 0.45 TCGA-EE-A2GR-06 17 6589527 6589527 T G SLC13A5 Nonstop_Mutation p.*569Sext*174 0.50 TCGA-EE-A2GR-06 17 66878041 66878041 C T ABCA8 Silent p.K1263K 0.19 TCGA-EE-A2GR-06 17 66883609 66883609 G A ABCA8 Silent p.S1021S 0.28 TCGA-EE-A2GR-06 17 6703386 6703386 C T TEKT1 Missense_Mutation p.G406E 0.44 tolerated_low_confidence(0.12) benign(0.434) TCGA-EE-A2GR-06 17 70118998 70118998 G A SOX9 Silent p.E190E 0.45 TCGA-EE-A2GR-06 17 71223333 71223333 G A FAM104A Missense_Mutation p.P98S 0.40 tolerated(0.18) benign(0.036) TCGA-EE-A2GR-06 17 71223334 71223334 G A FAM104A Silent p.N97N 0.39 TCGA-EE-A2GR-06 17 7186858 7186858 C T SLC2A4 Missense_Mutation p.P73S 0.56 tolerated(1) benign(0.017) TCGA-EE-A2GR-06 17 7188167 7188167 C T SLC2A4 Missense_Mutation p.S310L 0.17 deleterious(0) possibly_damaging(0.868) TCGA-EE-A2GR-06 17 72347046 72347046 T G KIF19 Splice_Site p.X529_splice 0.08 TCGA-EE-A2GR-06 17 72368373 72368373 G A GPR142 Silent p.R341R 0.21 TCGA-EE-A2GR-06 17 7240682 7240682 G A ACAP1 Silent p.L35L 0.24 TCGA-EE-A2GR-06 17 7290399 7290399 G A TNK1 Silent p.G446G 0.35 TCGA-EE-A2GR-06 17 72916142 72916142 A G USH1G Silent p.N263N 0.35 TCGA-EE-A2GR-06 17 72916143 72916143 T A USH1G Missense_Mutation p.N263I 0.35 deleterious(0.01) possibly_damaging(0.565) TCGA-EE-A2GR-06 17 72952020 72952020 C T HID1 Silent p.V501V 0.33 TCGA-EE-A2GR-06 17 73491705 73491705 C T KIAA0195 Silent p.F975F 0.28 TCGA-EE-A2GR-06 17 73559887 73559887 G A LLGL2 Missense_Mutation p.G294E 0.19 tolerated(0.16) probably_damaging(0.987) TCGA-EE-A2GR-06 17 73564710 73564710 C T LLGL2 Missense_Mutation p.P397L 0.17 deleterious(0) possibly_damaging(0.889) TCGA-EE-A2GR-06 17 73569201 73569201 C T LLGL2 Missense_Mutation p.A856V 0.56 tolerated(0.39) benign(0.003) TCGA-EE-A2GR-06 17 73569202 73569202 C T LLGL2 Silent p.A856A 0.58 TCGA-EE-A2GR-06 17 7365775 7365775 G A ZBTB4 Silent p.S842S 0.57 TCGA-EE-A2GR-06 17 7365776 7365776 G A ZBTB4 Missense_Mutation p.S842F 0.57 benign(0.094) TCGA-EE-A2GR-06 17 73775010 73775010 A T H3F3B Missense_Mutation p.Y55N 0.18 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-EE-A2GR-06 17 73832957 73832957 G A UNC13D Silent p.F366F 0.15 TCGA-EE-A2GR-06 17 73872477 73872477 C T TRIM47 Missense_Mutation p.E290K 0.38 tolerated(0.21) benign(0.073) TCGA-EE-A2GR-06 17 74003218 74003218 G A EVPL Missense_Mutation p.S2023F 0.27 tolerated(0.71) benign(0.068) TCGA-EE-A2GR-06 17 74010615 74010615 G A EVPL Silent p.F755F 0.37 TCGA-EE-A2GR-06 17 74077245 74077245 C T EXOC7 3'Flank 0.33 TCGA-EE-A2GR-06 17 74387359 74387359 G A UBE2O Nonsense_Mutation p.Q1182* 0.11 TCGA-EE-A2GR-06 17 74538647 74538647 T G PRCD Silent p.P52P 0.60 TCGA-EE-A2GR-06 17 74538648 74538648 C T PRCD Silent p.L53L 0.59 TCGA-EE-A2GR-06 17 7460614 7460614 C T TNFSF12 Intron 0.19 TCGA-EE-A2GR-06 17 76455235 76455235 C T DNAH17 Missense_Mutation p.A3223T 0.16 probably_damaging(0.997) TCGA-EE-A2GR-06 17 76554246 76554246 C T DNAH17 Missense_Mutation p.E708K 0.28 benign(0.216) TCGA-EE-A2GR-06 17 7727471 7727471 C T DNAH2 Silent p.L3837L 0.43 TCGA-EE-A2GR-06 17 7753485 7753485 C T KDM6B Silent p.S1221S 0.54 TCGA-EE-A2GR-06 17 7753486 7753486 C T KDM6B Silent p.L1222L 0.54 TCGA-EE-A2GR-06 17 78162266 78162266 G A CARD14 Missense_Mutation p.D256N 0.09 tolerated(0.43) benign(0.01) TCGA-EE-A2GR-06 17 7839764 7839764 C T CNTROB Silent p.D225D 0.19 TCGA-EE-A2GR-06 17 7839765 7839765 C T CNTROB Missense_Mutation p.R226C 0.19 deleterious(0) probably_damaging(0.935) TCGA-EE-A2GR-06 17 79244725 79244725 G A SLC38A10 Missense_Mutation p.S375F 0.26 tolerated(0.1) benign(0.139) TCGA-EE-A2GR-06 17 79662044 79662044 G A HGS Missense_Mutation p.E356K 0.14 tolerated(0.17) probably_damaging(0.931) TCGA-EE-A2GR-06 17 8000078 8000078 G A ALOXE3 Missense_Mutation p.P800L 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 17 8000079 8000079 G A ALOXE3 Missense_Mutation p.P800S 0.53 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GR-06 17 80013902 80013902 T C GPS1 Missense_Mutation p.I327T 0.30 tolerated(0.44) benign(0.005) TCGA-EE-A2GR-06 17 80018758 80018758 G A DUS1L Silent p.L308L 0.12 TCGA-EE-A2GR-06 17 80020802 80020802 G A DUS1L Missense_Mutation p.R149C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 17 80280141 80280141 C T SECTM1 Missense_Mutation p.E215K 0.38 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GR-06 17 80758854 80758854 C T TBCD Missense_Mutation p.P311L 0.61 deleterious(0) possibly_damaging(0.815) TCGA-EE-A2GR-06 17 81052048 81052048 G A METRNL Missense_Mutation p.D222N 0.60 tolerated(0.14) benign(0.236) TCGA-EE-A2GR-06 18 12325642 12325642 C T TUBB6 Missense_Mutation p.T285I 0.81 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-EE-A2GR-06 18 12325643 12325643 C T TUBB6 Silent p.T285T 0.84 TCGA-EE-A2GR-06 18 13059241 13059241 C T CEP192 Missense_Mutation p.T1473I 0.64 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 18 13885095 13885095 G A MC2R Silent p.I141I 0.34 TCGA-EE-A2GR-06 18 14543007 14543007 C T POTEC Missense_Mutation p.G47R 0.21 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-EE-A2GR-06 18 2718232 2718232 G A SMCHD1 Missense_Mutation p.M779I 0.35 tolerated(0.18) benign(0.008) TCGA-EE-A2GR-06 18 28911671 28911671 G A DSG1 Silent p.L175L 0.37 TCGA-EE-A2GR-06 18 29044212 29044212 G A DSG3 Missense_Mutation p.G380R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 18 29487477 29487477 A T TRAPPC8 Silent p.T445T 0.23 TCGA-EE-A2GR-06 18 31318725 31318725 G A ASXL3 Missense_Mutation p.E453K 0.33 probably_damaging(0.997) TCGA-EE-A2GR-06 18 31324329 31324329 G A ASXL3 Missense_Mutation p.R1506K 0.19 probably_damaging(0.99) TCGA-EE-A2GR-06 18 32398181 32398181 C T DTNA Missense_Mutation p.R255C 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GR-06 18 32917642 32917642 T A ZNF24 Missense_Mutation p.M221L 0.70 tolerated(0.76) benign(0) TCGA-EE-A2GR-06 18 3879493 3879493 C T DLGAP1 Silent p.K192K 0.68 TCGA-EE-A2GR-06 18 3880031 3880031 C T DLGAP1 Missense_Mutation p.G13E 0.37 tolerated(0.14) benign(0.347) TCGA-EE-A2GR-06 18 3880032 3880032 C T DLGAP1 Missense_Mutation p.G13R 0.37 tolerated(0.12) possibly_damaging(0.483) TCGA-EE-A2GR-06 18 40853613 40853613 G A SYT4 Missense_Mutation p.L261F 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 18 43205741 43205741 G A SLC14A2 Missense_Mutation p.D82N 0.53 tolerated(0.5) benign(0.002) TCGA-EE-A2GR-06 18 43328349 43328349 A C SLC14A1 Missense_Mutation p.T375P 0.29 deleterious(0.04) benign(0.046) TCGA-EE-A2GR-06 18 45395780 45395780 G A SMAD2 Silent p.S118S 0.77 TCGA-EE-A2GR-06 18 50683829 50683829 G A DCC Silent p.A455A 0.56 TCGA-EE-A2GR-06 18 51888050 51888050 C T C18orf54 Silent p.F107F 0.28 TCGA-EE-A2GR-06 18 52571559 52571559 C T CCDC68 3'UTR 0.31 TCGA-EE-A2GR-06 18 55247340 55247340 G A FECH Silent p.A53A 0.50 TCGA-EE-A2GR-06 18 56587508 56587508 C T ZNF532 Silent p.S663S 0.33 TCGA-EE-A2GR-06 18 57103130 57103130 T C CCBE1 3'UTR 0.60 TCGA-EE-A2GR-06 18 59483372 59483372 C T RNF152 Missense_Mutation p.E109K 0.42 tolerated(0.06) benign(0.027) TCGA-EE-A2GR-06 18 59483373 59483373 C T RNF152 Silent p.K108K 0.38 TCGA-EE-A2GR-06 18 59954692 59954692 C T KIAA1468 Missense_Mutation p.S1121F 0.36 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GR-06 18 61064419 61064419 G A VPS4B Silent p.L314L 0.36 TCGA-EE-A2GR-06 18 61064420 61064420 G A VPS4B Silent p.H313H 0.36 TCGA-EE-A2GR-06 18 61471587 61471587 G A SERPINB7 Missense_Mutation p.M287I 0.23 tolerated(0.2) benign(0.002) TCGA-EE-A2GR-06 18 61650953 61650953 G A SERPINB8 Missense_Mutation p.E189K 0.16 tolerated(1) benign(0.001) TCGA-EE-A2GR-06 18 64235818 64235818 C T CDH19 Missense_Mutation p.E109K 0.31 tolerated(0.23) benign(0.024) TCGA-EE-A2GR-06 18 64235912 64235912 G A CDH19 Silent p.F77F 0.32 TCGA-EE-A2GR-06 18 7008537 7008537 G A LAMA1 Missense_Mutation p.L1358F 0.70 tolerated(0.12) benign(0.078) TCGA-EE-A2GR-06 18 72347586 72347586 C T ZNF407 Silent p.N1537N 0.53 TCGA-EE-A2GR-06 18 74092172 74092172 T A ZNF516 Missense_Mutation p.N633I 0.32 tolerated(0.08) benign(0.034) TCGA-EE-A2GR-06 18 77170930 77170930 G A NFATC1 Missense_Mutation p.E206K 0.56 deleterious(0.04) benign(0.354) TCGA-EE-A2GR-06 18 77893615 77893615 C T ADNP2 Missense_Mutation p.P107S 0.29 tolerated(0.41) benign(0.023) TCGA-EE-A2GR-06 18 909638 909638 G A ADCYAP1 3'UTR 0.28 TCGA-EE-A2GR-06 18 9258620 9258620 G T ANKRD12 Silent p.R1785R 0.74 TCGA-EE-A2GR-06 19 10081684 10081684 C T COL5A3 Silent p.G1283G 0.23 TCGA-EE-A2GR-06 19 10081685 10081685 C T COL5A3 Missense_Mutation p.G1283E 0.22 unknown(0) TCGA-EE-A2GR-06 19 10085069 10085069 G A COL5A3 Nonsense_Mutation p.Q1120* 0.76 TCGA-EE-A2GR-06 19 10106767 10106767 C T COL5A3 Missense_Mutation p.G503E 0.18 unknown(0) TCGA-EE-A2GR-06 19 10404517 10404517 G A ICAM5 Missense_Mutation p.E537K 0.37 tolerated(0.08) benign(0.025) TCGA-EE-A2GR-06 19 10433941 10433941 G A RAVER1 Missense_Mutation p.R337W 0.40 deleterious(0) benign(0.022) TCGA-EE-A2GR-06 19 10742376 10742376 G A SLC44A2 Missense_Mutation p.D193N 0.41 deleterious(0.04) benign(0.049) TCGA-EE-A2GR-06 19 10793377 10793377 C T ILF3 Silent p.A515A 0.12 TCGA-EE-A2GR-06 19 11624692 11624692 G A ECSIT Silent p.I147I 0.15 TCGA-EE-A2GR-06 19 11832979 11832979 G A ZNF823 Missense_Mutation p.S457F 0.44 tolerated(0.08) probably_damaging(1) TCGA-EE-A2GR-06 19 12575099 12575099 G A ZNF709 Missense_Mutation p.S546F 0.48 tolerated(0.09) probably_damaging(0.93) TCGA-EE-A2GR-06 19 12858873 12858873 C T ASNA1 Silent p.F334F 0.53 TCGA-EE-A2GR-06 19 12945611 12945611 G A RTBDN Silent p.L22L 0.21 TCGA-EE-A2GR-06 19 13041248 13041248 G A FARSA Nonsense_Mutation p.R127* 0.28 TCGA-EE-A2GR-06 19 13993576 13993576 G A C19orf57 3'UTR 0.22 TCGA-EE-A2GR-06 19 14006359 14006359 C A C19orf57 Missense_Mutation p.G11V 0.26 deleterious(0) benign(0.344) TCGA-EE-A2GR-06 19 14232369 14232369 G A ASF1B Missense_Mutation p.P126L 0.43 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A2GR-06 19 14744099 14744099 C T EMR3 Silent p.L500L 0.38 TCGA-EE-A2GR-06 19 1578310 1578310 G A MBD3 3'UTR 0.41 TCGA-EE-A2GR-06 19 1578341 1578341 A T MBD3 Nonstop_Mutation p.*292Kext*22 0.42 TCGA-EE-A2GR-06 19 16025191 16025191 C T CYP4F11 Missense_Mutation p.D441N 0.18 tolerated(0.4) benign(0.243) TCGA-EE-A2GR-06 19 16038253 16038253 C T CYP4F11 Silent p.L128L 0.49 TCGA-EE-A2GR-06 19 16060239 16060239 A C OR10H4 Missense_Mutation p.D141A 0.38 tolerated(0.82) benign(0.003) TCGA-EE-A2GR-06 19 16918540 16918540 C T NWD1 Missense_Mutation p.P1294S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 19 17056472 17056472 C T CPAMD8 Missense_Mutation p.G941R 0.19 tolerated(0.26) benign(0.019) TCGA-EE-A2GR-06 19 17412068 17412068 C T ABHD8 Missense_Mutation p.E120K 0.55 deleterious(0.03) benign(0.035) TCGA-EE-A2GR-06 19 17476802 17476802 G A PLVAP Missense_Mutation p.L158F 0.23 tolerated(0.46) benign(0.026) TCGA-EE-A2GR-06 19 19627014 19627014 C T NDUFA13 5'UTR 0.28 TCGA-EE-A2GR-06 19 19656741 19656741 C T CILP2 Silent p.I1129I 0.50 TCGA-EE-A2GR-06 19 20002636 20002636 C T ZNF253 Missense_Mutation p.H194Y 0.38 tolerated(0.12) benign(0.023) TCGA-EE-A2GR-06 19 20116724 20116724 G A ZNF682 3'UTR 0.31 TCGA-EE-A2GR-06 19 20975437 20975437 C T ZNF66 Silent p.V41V 0.14 TCGA-EE-A2GR-06 19 2114268 2114268 C T AP3D1 Silent p.Q819Q 0.27 TCGA-EE-A2GR-06 19 22271303 22271303 C T ZNF257 Missense_Mutation p.H251Y 0.25 deleterious(0.05) possibly_damaging(0.455) TCGA-EE-A2GR-06 19 22363113 22363113 C T ZNF676 Missense_Mutation p.R469K 0.22 tolerated(0.81) benign(0.002) TCGA-EE-A2GR-06 19 22574587 22574587 G A ZNF98 Missense_Mutation p.H484Y 0.36 deleterious(0.02) probably_damaging(0.943) TCGA-EE-A2GR-06 19 22941109 22941109 C T ZNF99 Silent p.K534K 0.41 TCGA-EE-A2GR-06 19 2834600 2834600 G A ZNF554 Missense_Mutation p.R456Q 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GR-06 19 2873517 2873517 G A ZNF556 Silent p.V9V 0.19 TCGA-EE-A2GR-06 19 291325 291325 C T PPAP2C 5'Flank 0.35 TCGA-EE-A2GR-06 19 291326 291326 C T PPAP2C 5'Flank 0.33 TCGA-EE-A2GR-06 19 3005778 3005778 G A TLE2 Silent p.F563F 0.40 TCGA-EE-A2GR-06 19 30502112 30502112 C T URI1 Missense_Mutation p.P383S 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2GR-06 19 31038939 31038939 C T ZNF536 Missense_Mutation p.R805W 0.15 deleterious(0) possibly_damaging(0.855) TCGA-EE-A2GR-06 19 31039973 31039973 C T ZNF536 Silent p.I1149I 0.55 TCGA-EE-A2GR-06 19 31040309 31040309 G A ZNF536 Silent p.P1261P 0.48 TCGA-EE-A2GR-06 19 31770324 31770324 G A TSHZ3 Silent p.F125F 0.40 TCGA-EE-A2GR-06 19 327918 327918 C T MIER2 Silent p.R105R 0.37 TCGA-EE-A2GR-06 19 3290302 3290302 C T CELF5 Silent p.F420F 0.39 TCGA-EE-A2GR-06 19 33355126 33355126 G A SLC7A9 Silent p.I118I 0.17 TCGA-EE-A2GR-06 19 34302715 34302715 C T KCTD15 Intron 0.10 TCGA-EE-A2GR-06 19 36236336 36236336 C T PSENEN 5'UTR 0.51 TCGA-EE-A2GR-06 19 375747 375747 G A THEG Missense_Mutation p.P75L 0.48 tolerated(0.38) benign(0) TCGA-EE-A2GR-06 19 37975998 37975998 C T ZNF570 Missense_Mutation p.H492Y 0.46 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GR-06 19 38160067 38160067 T G ZNF781 Nonstop_Mutation p.*328Sext*1 0.33 TCGA-EE-A2GR-06 19 38610002 38610002 G A SIPA1L3 Missense_Mutation p.G783E 0.53 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A2GR-06 19 38903927 38903927 G A RASGRP4 Missense_Mutation p.P441L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 19 39100552 39100552 G A MAP4K1 Silent p.P308P 0.22 TCGA-EE-A2GR-06 19 39100553 39100553 G A MAP4K1 Missense_Mutation p.P308L 0.23 tolerated(0.66) benign(0.101) TCGA-EE-A2GR-06 19 40368475 40368475 G A FCGBP Silent p.F4291F 0.17 TCGA-EE-A2GR-06 19 40419943 40419943 C T FCGBP Silent p.R1017R 0.79 TCGA-EE-A2GR-06 19 40420098 40420098 C T FCGBP Missense_Mutation p.G966S 0.22 probably_damaging(1) TCGA-EE-A2GR-06 19 40884086 40884086 G A PLD3 3'UTR 0.18 TCGA-EE-A2GR-06 19 41265428 41265428 C T SNRPA Silent p.P113P 0.21 TCGA-EE-A2GR-06 19 41509892 41509892 G A CYP2B6 Intron 0.26 TCGA-EE-A2GR-06 19 41510224 41510224 C T CYP2B6 Silent p.N119N 0.17 TCGA-EE-A2GR-06 19 41510225 41510225 C T CYP2B6 Missense_Mutation p.R120C 0.16 deleterious(0.02) benign(0.071) TCGA-EE-A2GR-06 19 41762487 41762487 G A AXL Missense_Mutation p.D723N 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GR-06 19 41765666 41765666 C T AXL Missense_Mutation p.P848S 0.75 tolerated(0.14) benign(0.046) TCGA-EE-A2GR-06 19 41765667 41765667 C T AXL Missense_Mutation p.P848L 0.75 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A2GR-06 19 42125566 42125566 C T CEACAM4 3'UTR 1.00 TCGA-EE-A2GR-06 19 42221500 42221500 G A CEACAM5 Missense_Mutation p.S362N 0.63 tolerated(0.17) unknown(0) TCGA-EE-A2GR-06 19 42315244 42315244 G A CEACAM3 Missense_Mutation p.R243Q 0.25 tolerated(0.91) benign(0.134) TCGA-EE-A2GR-06 19 42752989 42752989 G A ERF Silent p.I425I 0.19 TCGA-EE-A2GR-06 19 42839188 42839188 C T MEGF8 Missense_Mutation p.P187L 0.21 tolerated(0.13) benign(0.013) TCGA-EE-A2GR-06 19 43349213 43349213 G A PSG10P RNA 0.27 TCGA-EE-A2GR-06 19 43428899 43428899 G A PSG7 3'UTR 0.23 TCGA-EE-A2GR-06 19 43429951 43429951 G A PSG7 Missense_Mutation p.S406F 0.76 tolerated(0.08) benign(0.027) TCGA-EE-A2GR-06 19 43680079 43680079 C T PSG5 Missense_Mutation p.E218K 0.24 deleterious(0) probably_damaging(0.953) TCGA-EE-A2GR-06 19 43757724 43757724 C T PSG9 3'UTR 1.00 TCGA-EE-A2GR-06 19 43859878 43859878 G A CD177 3'UTR 0.22 TCGA-EE-A2GR-06 19 44351370 44351370 C T ZNF283 Missense_Mutation p.S206F 0.21 tolerated(0.08) benign(0.188) TCGA-EE-A2GR-06 19 44679881 44679881 C T ZNF226 Missense_Mutation p.P156S 0.71 tolerated(1) benign(0.014) TCGA-EE-A2GR-06 19 44777836 44777836 C T ZNF233 Silent p.L341L 0.32 TCGA-EE-A2GR-06 19 44933922 44933922 C T ZNF229 Missense_Mutation p.G345E 0.21 tolerated(0.09) benign(0.044) TCGA-EE-A2GR-06 19 45028295 45028295 C T CEACAM20 Splice_Site 0.73 TCGA-EE-A2GR-06 19 46289820 46289820 G A DMWD Missense_Mutation p.H312Y 0.33 tolerated(0.08) benign(0.052) TCGA-EE-A2GR-06 19 47570822 47570822 G A ZC3H4 Silent p.P901P 0.70 TCGA-EE-A2GR-06 19 48733884 48733884 G A CARD8 Silent p.A282A 0.73 TCGA-EE-A2GR-06 19 48801296 48801296 A C CCDC114 Missense_Mutation p.L451R 0.18 deleterious(0.03) possibly_damaging(0.812) TCGA-EE-A2GR-06 19 48869057 48869057 C T SYNGR4 5'UTR 0.28 TCGA-EE-A2GR-06 19 49502594 49502594 C T RUVBL2 Missense_Mutation p.P11S 0.24 tolerated(0.69) benign(0.001) TCGA-EE-A2GR-06 19 49632189 49632189 C T PPFIA3 Missense_Mutation p.P143S 0.21 tolerated(0.08) possibly_damaging(0.798) TCGA-EE-A2GR-06 19 498503 498503 G A MADCAM1 Silent p.P115P 0.41 TCGA-EE-A2GR-06 19 49995048 49995048 C T RPL13A Silent p.L196L 0.81 TCGA-EE-A2GR-06 19 50029284 50029284 C T FCGRT Missense_Mutation p.R336C 0.24 deleterious(0) possibly_damaging(0.8) TCGA-EE-A2GR-06 19 504926 504926 G A MADCAM1 Silent p.G370G 0.40 TCGA-EE-A2GR-06 19 50944201 50944201 G A MYBPC2 Missense_Mutation p.E213K 0.30 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2GR-06 19 51020884 51020884 C T LRRC4B Missense_Mutation p.E696K 0.22 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-EE-A2GR-06 19 51645690 51645690 A C SIGLEC7 Missense_Mutation p.N22H 0.65 tolerated(0.33) benign(0.004) TCGA-EE-A2GR-06 19 51656392 51656392 G A SIGLEC7 Missense_Mutation p.E432K 0.53 tolerated(0.09) benign(0.252) TCGA-EE-A2GR-06 19 51916984 51916984 G A SIGLEC10 Silent p.V601V 0.63 TCGA-EE-A2GR-06 19 52033958 52033958 C T SIGLEC6 Missense_Mutation p.R228K 0.61 tolerated(0.18) benign(0.068) TCGA-EE-A2GR-06 19 52195888 52195888 T C SPACA6P-AS Intron 0.75 TCGA-EE-A2GR-06 19 5219985 5219985 G A PTPRS Missense_Mutation p.L1244F 0.37 tolerated(0.82) benign(0.011) TCGA-EE-A2GR-06 19 52272026 52272026 C T FPR2 Missense_Mutation p.L39F 0.61 tolerated(0.07) benign(0.102) TCGA-EE-A2GR-06 19 5229345 5229345 C T PTPRS Silent p.T786T 0.31 TCGA-EE-A2GR-06 19 52327436 52327436 G A FPR3 Silent p.V145V 0.73 TCGA-EE-A2GR-06 19 52705250 52705250 T A PPP2R1A Silent p.V44V 0.27 TCGA-EE-A2GR-06 19 53945568 53945568 C T TPM3P9 RNA 0.54 TCGA-EE-A2GR-06 19 53945569 53945569 C T TPM3P9 RNA 0.54 TCGA-EE-A2GR-06 19 54081122 54081122 G A ZNF331 Silent p.A436A 0.29 TCGA-EE-A2GR-06 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.29 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A2GR-06 19 54313568 54313568 C T NLRP12 Missense_Mutation p.A449T 0.20 tolerated(0.92) benign(0.001) TCGA-EE-A2GR-06 19 54313569 54313569 C T NLRP12 Silent p.G448G 0.22 TCGA-EE-A2GR-06 19 547286 547286 C T GZMM Missense_Mutation p.S21F 0.57 tolerated(0.69) benign(0.01) TCGA-EE-A2GR-06 19 55423586 55423586 G A NCR1 Missense_Mutation p.D245N 0.28 tolerated(0.17) possibly_damaging(0.467) TCGA-EE-A2GR-06 19 55741856 55741856 G A PPP6R1 3'UTR 0.41 TCGA-EE-A2GR-06 19 56370018 56370018 G A NLRP4 Missense_Mutation p.R420Q 0.54 deleterious(0.03) benign(0.079) TCGA-EE-A2GR-06 19 56423175 56423175 C T NLRP13 Missense_Mutation p.E670K 0.35 tolerated(0.07) benign(0.095) TCGA-EE-A2GR-06 19 56485018 56485018 G A NLRP8 Silent p.S845S 0.57 TCGA-EE-A2GR-06 19 5680544 5680544 C T C19orf70 5'UTR 0.34 TCGA-EE-A2GR-06 19 57132752 57132752 C T ZNF71 Missense_Mutation p.P33S 0.28 tolerated(0.72) benign(0) TCGA-EE-A2GR-06 19 57325321 57325321 C T PEG3 Missense_Mutation p.E1497K 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2GR-06 19 57328838 57328838 G A PEG3 Silent p.R324R 0.73 TCGA-EE-A2GR-06 19 57335843 57335843 G T PEG3 Silent p.R61R 0.57 TCGA-EE-A2GR-06 19 58118495 58118495 C T ZNF530 Silent p.L534L 0.16 TCGA-EE-A2GR-06 19 5844392 5844392 G A FUT3 Silent p.F153F 0.46 TCGA-EE-A2GR-06 19 58904809 58904809 G A RPS5 Silent p.V134V 0.25 TCGA-EE-A2GR-06 19 6696664 6696664 C T C3 Missense_Mutation p.G935R 0.29 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GR-06 19 7573212 7573212 G A C19orf45 Missense_Mutation p.E472K 0.47 deleterious(0.04) benign(0.193) TCGA-EE-A2GR-06 19 7573214 7573214 G A C19orf45 Silent p.E472E 0.48 TCGA-EE-A2GR-06 19 7573215 7573215 G A C19orf45 Missense_Mutation p.G473S 0.50 tolerated(1) benign(0.001) TCGA-EE-A2GR-06 19 7686102 7686102 G A XAB2 Missense_Mutation p.R567C 0.42 deleterious(0) benign(0.201) TCGA-EE-A2GR-06 19 7963729 7963729 G A LRRC8E Missense_Mutation p.E108K 0.60 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2GR-06 19 830846 830846 C T AZU1 Missense_Mutation p.P167S 0.65 tolerated(0.23) benign(0.238) TCGA-EE-A2GR-06 19 8495677 8495677 C T MARCH2 Missense_Mutation p.H170Y 0.58 tolerated(0.52) benign(0.232) TCGA-EE-A2GR-06 19 8976277 8976277 T C MUC16 Missense_Mutation p.D14184G 0.39 possibly_damaging(0.73) TCGA-EE-A2GR-06 19 9028394 9028394 G A MUC16 Missense_Mutation p.P12133L 0.35 benign(0.371) TCGA-EE-A2GR-06 19 9056722 9056722 C T MUC16 Missense_Mutation p.G10242R 0.44 benign(0.145) TCGA-EE-A2GR-06 19 9069094 9069094 G A MUC16 Missense_Mutation p.P6118S 0.30 unknown(0) TCGA-EE-A2GR-06 19 9070548 9070548 G A MUC16 Missense_Mutation p.S5633F 0.14 unknown(0) TCGA-EE-A2GR-06 19 9083510 9083510 C T MUC16 Missense_Mutation p.E2769K 0.54 unknown(0) TCGA-EE-A2GR-06 19 9085683 9085683 C T MUC16 Silent p.R2044R 0.46 TCGA-EE-A2GR-06 1 109191228 109191228 G A HENMT1 Missense_Mutation p.A381V 0.65 tolerated(1) benign(0.001) TCGA-EE-A2GR-06 1 11008258 11008258 G A C1orf127 Missense_Mutation p.S645F 0.43 tolerated(0.11) probably_damaging(0.986) TCGA-EE-A2GR-06 1 110085864 110085864 C T GPR61 Nonsense_Mutation p.R74* 0.48 TCGA-EE-A2GR-06 1 110085890 110085905 CTGCCTGGTGGACCTG - GPR61 Frame_Shift_Del p.C83Wfs*4 0.49 TCGA-EE-A2GR-06 1 110293374 110293374 G A EPS8L3 Missense_Mutation p.L561F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 1 110882213 110882213 G A RBM15 Silent p.E62E 0.30 TCGA-EE-A2GR-06 1 110923715 110923715 A T SLC16A4 Missense_Mutation p.Y139N 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GR-06 1 111060215 111060215 C T KCNA10 Missense_Mutation p.D399N 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GR-06 1 111957818 111957818 G A OVGP1 Silent p.I435I 0.59 TCGA-EE-A2GR-06 1 112524433 112524433 C T KCND3 Missense_Mutation p.G306S 0.20 deleterious(0) probably_damaging(0.959) TCGA-EE-A2GR-06 1 113655232 113655232 C T LRIG2 Missense_Mutation p.P644S 0.55 deleterious(0) possibly_damaging(0.74) TCGA-EE-A2GR-06 1 114319871 114319871 G A RSBN1 Missense_Mutation p.P540L 0.29 deleterious(0) benign(0.024) TCGA-EE-A2GR-06 1 114454172 114454172 C T DCLRE1B Missense_Mutation p.P320S 0.34 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GR-06 1 115537595 115537595 G A SYCP1 Missense_Mutation p.M962I 0.67 tolerated(0.28) benign(0.001) TCGA-EE-A2GR-06 1 11589625 11589625 C T PTCHD2 Silent p.F937F 0.43 TCGA-EE-A2GR-06 1 117078584 117078584 C A CD58 Intron 0.29 TCGA-EE-A2GR-06 1 117633165 117633165 C T TTF2 Silent p.P836P 0.58 TCGA-EE-A2GR-06 1 118494990 118494990 C T WDR3 Nonsense_Mutation p.Q659* 0.10 TCGA-EE-A2GR-06 1 118516144 118516144 G A SPAG17 Silent p.S2015S 0.04 TCGA-EE-A2GR-06 1 12032952 12032952 C T PLOD1 Silent p.V642V 0.58 TCGA-EE-A2GR-06 1 120927294 120927294 C T FCGR1B Nonsense_Mutation p.W229* 0.89 TCGA-EE-A2GR-06 1 12170215 12170215 G A TNFRSF8 Silent p.R210R 0.29 TCGA-EE-A2GR-06 1 12353750 12353750 G A VPS13D Missense_Mutation p.E2008K 0.26 benign(0.015) TCGA-EE-A2GR-06 1 1275130 1275130 G A DVL1 Silent p.I324I 0.29 TCGA-EE-A2GR-06 1 142713858 142713858 C T RP11-417J8.6 RNA 0.21 TCGA-EE-A2GR-06 1 144879495 144879495 G A PDE4DIP Missense_Mutation p.R1319W 0.84 tolerated(0.09) benign(0) TCGA-EE-A2GR-06 1 144879496 144879496 G A PDE4DIP Silent p.R1318R 0.84 TCGA-EE-A2GR-06 1 147955418 147955418 G A PPIAL4A 5'UTR 0.11 TCGA-EE-A2GR-06 1 150471388 150471388 C T TARS2 Nonsense_Mutation p.Q473* 0.39 TCGA-EE-A2GR-06 1 151315884 151315884 A G RFX5 Silent p.S264S 0.46 TCGA-EE-A2GR-06 1 152190978 152190978 C T HRNR Missense_Mutation p.G1043S 0.43 unknown(0) TCGA-EE-A2GR-06 1 152192069 152192069 C T HRNR Missense_Mutation p.G679E 0.50 unknown(0) TCGA-EE-A2GR-06 1 152280391 152280391 G A FLG Missense_Mutation p.S2324L 0.67 possibly_damaging(0.637) TCGA-EE-A2GR-06 1 152281798 152281798 G A FLG Missense_Mutation p.S1855F 0.41 possibly_damaging(0.485) TCGA-EE-A2GR-06 1 152285985 152285985 C T FLG Silent p.G459G 0.46 TCGA-EE-A2GR-06 1 152327430 152327430 C T FLG2 Silent p.Q944Q 0.24 TCGA-EE-A2GR-06 1 152382338 152382338 C T CRNN Missense_Mutation p.G407E 0.38 tolerated(0.3) benign(0.038) TCGA-EE-A2GR-06 1 152733095 152733095 C T KPRP Missense_Mutation p.P344L 0.54 deleterious(0.01) possibly_damaging(0.738) TCGA-EE-A2GR-06 1 152857234 152857234 C T SMCP Silent p.S112S 0.43 TCGA-EE-A2GR-06 1 153012692 153012692 G A SPRR2D Missense_Mutation p.P44L 0.28 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GR-06 1 154042924 154042924 C T NUP210L Silent p.L793L 0.34 TCGA-EE-A2GR-06 1 154315294 154315294 C T ATP8B2 Missense_Mutation p.S470F 0.19 deleterious(0) possibly_damaging(0.646) TCGA-EE-A2GR-06 1 154315295 154315295 C T ATP8B2 Silent p.S470S 0.18 TCGA-EE-A2GR-06 1 154841962 154841962 G A KCNN3 Missense_Mutation p.P160L 0.61 deleterious_low_confidence(0.03) possibly_damaging(0.687) TCGA-EE-A2GR-06 1 155152210 155152210 C T TRIM46 Missense_Mutation p.T463I 0.32 tolerated(0.45) possibly_damaging(0.818) TCGA-EE-A2GR-06 1 155319343 155319343 G A ASH1L Missense_Mutation p.P2471S 0.42 tolerated_low_confidence(0.98) benign(0.002) TCGA-EE-A2GR-06 1 155989874 155989874 G A SSR2 Silent p.L29L 0.40 TCGA-EE-A2GR-06 1 156261300 156261300 G A TMEM79 Missense_Mutation p.E366K 0.48 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2GR-06 1 156642501 156642501 G A NES Silent p.C493C 0.50 TCGA-EE-A2GR-06 1 156779029 156779029 C T SH2D2A Missense_Mutation p.R333Q 0.21 tolerated(0.11) benign(0.128) TCGA-EE-A2GR-06 1 156821680 156821680 C T INSRR Missense_Mutation p.S314N 0.20 tolerated(0.49) benign(0.184) TCGA-EE-A2GR-06 1 156823977 156823977 G A INSRR Silent p.F68F 0.42 TCGA-EE-A2GR-06 1 157494241 157494241 G A FCRL5 Silent p.I689I 0.47 TCGA-EE-A2GR-06 1 157666086 157666086 G A FCRL3 Silent p.I292I 0.19 TCGA-EE-A2GR-06 1 157768028 157768028 A T FCRL1 Missense_Mutation p.L346H 0.34 tolerated(0.23) possibly_damaging(0.699) TCGA-EE-A2GR-06 1 158225110 158225110 C T CD1A Missense_Mutation p.R99C 0.17 deleterious(0.01) benign(0.319) TCGA-EE-A2GR-06 1 158325692 158325692 G A CD1E Missense_Mutation p.G234E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 158326480 158326480 C T CD1E Intron 0.20 TCGA-EE-A2GR-06 1 158449913 158449913 C T OR10R2 Silent p.F82F 0.47 TCGA-EE-A2GR-06 1 158614043 158614043 C T SPTA1 Silent p.Q1446Q 0.53 TCGA-EE-A2GR-06 1 158637817 158637817 C T SPTA1 Silent p.Q623Q 0.41 TCGA-EE-A2GR-06 1 158909032 158909032 A G PYHIN1 Missense_Mutation p.T192A 0.21 tolerated(0.73) benign(0.002) TCGA-EE-A2GR-06 1 159176192 159176192 C T DARC Silent p.L323L 0.25 TCGA-EE-A2GR-06 1 159283706 159283706 C T OR10J3 Silent p.V248V 0.14 TCGA-EE-A2GR-06 1 159283943 159283943 G A OR10J3 Silent p.F169F 0.51 TCGA-EE-A2GR-06 1 159558477 159558477 C T APCS Silent p.I217I 0.51 TCGA-EE-A2GR-06 1 159907490 159907490 T G IGSF9 Missense_Mutation p.H129P 0.37 deleterious(0.01) possibly_damaging(0.837) TCGA-EE-A2GR-06 1 160011956 160011956 G A KCNJ10 Missense_Mutation p.L123F 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GR-06 1 160389283 160389283 C T VANGL2 Silent p.F228F 0.27 TCGA-EE-A2GR-06 1 160783507 160783507 C T LY9 Missense_Mutation p.S179F 0.43 tolerated(0.22) benign(0.267) TCGA-EE-A2GR-06 1 160788049 160788049 A C LY9 Missense_Mutation p.M462L 0.37 tolerated(1) benign(0.022) TCGA-EE-A2GR-06 1 160920899 160920899 C T ITLN2 Silent p.G125G 0.56 TCGA-EE-A2GR-06 1 161514491 161514491 C T FCGR3A Missense_Mutation p.G229S 0.32 tolerated(0.16) benign(0.036) TCGA-EE-A2GR-06 1 162492395 162492395 C T UHMK1 3'UTR 0.63 TCGA-EE-A2GR-06 1 16460021 16460021 C T EPHA2 Missense_Mutation p.E607K 0.52 deleterious(0) possibly_damaging(0.572) TCGA-EE-A2GR-06 1 165398042 165398042 G A RXRG Nonsense_Mutation p.R71* 0.53 TCGA-EE-A2GR-06 1 166974589 166974589 G A MAEL Missense_Mutation p.R267Q 0.26 tolerated(0.3) benign(0.313) TCGA-EE-A2GR-06 1 167802365 167802365 C T ADCY10 Silent p.K1151K 0.22 TCGA-EE-A2GR-06 1 168073859 168073859 G A GPR161 Missense_Mutation p.S97F 0.21 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GR-06 1 16892268 16892268 G A NBPF1 Missense_Mutation p.P975L 0.04 deleterious(0.04) possibly_damaging(0.604) TCGA-EE-A2GR-06 1 16895665 16895665 G A NBPF1 Silent p.L839L 0.15 TCGA-EE-A2GR-06 1 169697210 169697210 G A SELE Missense_Mutation p.P423L 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 1 172417629 172417629 G A C1orf105 Missense_Mutation p.M52I 0.48 deleterious(0.02) benign(0.043) TCGA-EE-A2GR-06 1 172417667 172417667 C T C1orf105 Missense_Mutation p.S65F 0.50 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A2GR-06 1 173010672 173010672 C T TNFSF18 Missense_Mutation p.M145I 0.20 tolerated(0.92) benign(0) TCGA-EE-A2GR-06 1 173454641 173454641 C T PRDX6 Missense_Mutation p.R132C 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GR-06 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.27 tolerated(1) benign(0.003) TCGA-EE-A2GR-06 1 175046539 175046539 C T TNN 5'UTR 0.29 TCGA-EE-A2GR-06 1 176132980 176132980 A G RFWD2 Missense_Mutation p.F205L 0.48 tolerated(0.91) benign(0) TCGA-EE-A2GR-06 1 176668462 176668462 G A PAPPA2 Silent p.K991K 0.51 TCGA-EE-A2GR-06 1 176863960 176863960 G A ASTN1 Missense_Mutation p.S893F 0.47 deleterious(0.02) possibly_damaging(0.549) TCGA-EE-A2GR-06 1 177250217 177250217 G A BRINP2 Nonsense_Mutation p.W635* 0.49 TCGA-EE-A2GR-06 1 179347892 179347892 G A AXDND1 Silent p.K165K 0.34 TCGA-EE-A2GR-06 1 179497510 179497510 G A AXDND1 Missense_Mutation p.E887K 0.62 tolerated(0.96) benign(0) TCGA-EE-A2GR-06 1 179523676 179523676 G A AXDND1 3'UTR 0.24 TCGA-EE-A2GR-06 1 181018307 181018307 C T MR1 Missense_Mutation p.R63W 0.50 deleterious(0) benign(0.098) TCGA-EE-A2GR-06 1 181721290 181721290 G A CACNA1E Missense_Mutation p.G1248E 0.51 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 1 181741302 181741302 G A CACNA1E Missense_Mutation p.E1692K 0.46 tolerated(0.12) possibly_damaging(0.635) TCGA-EE-A2GR-06 1 183514306 183514306 C T SMG7 Silent p.P697P 0.13 TCGA-EE-A2GR-06 1 183514307 183514307 C T SMG7 Missense_Mutation p.L698F 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.642) TCGA-EE-A2GR-06 1 186064617 186064617 G A HMCN1 Missense_Mutation p.G3513R 0.38 probably_damaging(0.95) TCGA-EE-A2GR-06 1 186083197 186083197 C T HMCN1 Missense_Mutation p.P3740S 0.19 probably_damaging(0.998) TCGA-EE-A2GR-06 1 186105887 186105887 C T HMCN1 Missense_Mutation p.P4467L 0.19 probably_damaging(0.999) TCGA-EE-A2GR-06 1 18702815 18702815 G A IGSF21 Missense_Mutation p.G343R 0.56 deleterious(0.03) benign(0.087) TCGA-EE-A2GR-06 1 18809632 18809632 C T KLHDC7A Silent p.A719A 0.26 TCGA-EE-A2GR-06 1 190067368 190067368 C T BRINP3 Missense_Mutation p.G694E 0.48 deleterious(0.03) probably_damaging(0.941) TCGA-EE-A2GR-06 1 190195314 190195314 G A BRINP3 Missense_Mutation p.P287S 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 1 1919980 1919980 C T C1orf222 Silent p.E80E 0.29 TCGA-EE-A2GR-06 1 19433105 19433105 G A UBR4 Silent p.S4117S 0.28 TCGA-EE-A2GR-06 1 196646648 196646648 T G CFH Missense_Mutation p.I157S 0.52 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GR-06 1 197029561 197029561 A G F13B Missense_Mutation p.L247P 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 1 197099171 197099171 G T ASPM Missense_Mutation p.L835I 0.44 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GR-06 1 197407739 197407739 G A CRB1 Missense_Mutation p.G1271E 0.50 tolerated(0.06) possibly_damaging(0.707) TCGA-EE-A2GR-06 1 197898140 197898140 C T LHX9 Silent p.F315F 0.25 TCGA-EE-A2GR-06 1 198225457 198225457 G A NEK7 Intron 0.33 TCGA-EE-A2GR-06 1 198225458 198225458 G A NEK7 Intron 0.33 TCGA-EE-A2GR-06 1 200080397 200080397 G A NR5A2 Missense_Mutation p.R393Q 0.56 tolerated(0.14) possibly_damaging(0.884) TCGA-EE-A2GR-06 1 200080416 200080416 G A NR5A2 Silent p.K399K 0.45 TCGA-EE-A2GR-06 1 200880918 200880918 C T C1orf106 Missense_Mutation p.P433S 0.35 tolerated(0.1) benign(0.17) TCGA-EE-A2GR-06 1 201081513 201081513 C T CACNA1S 5'UTR 0.19 TCGA-EE-A2GR-06 1 201195037 201195037 G T IGFN1 Missense_Mutation p.E3524D 0.58 probably_damaging(0.946) TCGA-EE-A2GR-06 1 201356204 201356204 C T LAD1 Silent p.R95R 0.48 TCGA-EE-A2GR-06 1 201751423 201751423 G A NAV1 Missense_Mutation p.G595S 0.55 tolerated(0.18) probably_damaging(1) TCGA-EE-A2GR-06 1 202107544 202107544 G A ARL8A Silent p.T52T 0.51 TCGA-EE-A2GR-06 1 202123350 202123350 G A PTPN7 Silent p.L295L 0.40 TCGA-EE-A2GR-06 1 202571506 202571506 C T SYT2 Silent p.K211K 0.48 TCGA-EE-A2GR-06 1 20304957 20304957 C T PLA2G2A Missense_Mutation p.G34E 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2GR-06 1 203134668 203134668 C T ADORA1 Silent p.I207I 0.44 TCGA-EE-A2GR-06 1 204093876 204093876 C T SOX13 Missense_Mutation p.P495S 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 204926913 204926913 C T NFASC Missense_Mutation p.T222I 0.14 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 1 205499796 205499796 G A CDK18 Silent p.K481K 0.15 TCGA-EE-A2GR-06 1 205897030 205897030 C T SLC26A9 Silent p.Q367Q 0.18 TCGA-EE-A2GR-06 1 207039657 207039657 G A IL20 Missense_Mutation p.G58E 0.26 tolerated(1) benign(0.003) TCGA-EE-A2GR-06 1 207741343 207741343 G A CR1 Missense_Mutation p.G1376E 0.34 tolerated(0.07) probably_damaging(0.971) TCGA-EE-A2GR-06 1 207890877 207890877 C T CR1L Missense_Mutation p.P495S 0.25 tolerated(0.48) possibly_damaging(0.522) TCGA-EE-A2GR-06 1 209773327 209773327 G A CAMK1G Splice_Site p.X31_splice 0.50 TCGA-EE-A2GR-06 1 210761285 210761285 G A HHAT Missense_Mutation p.G364R 0.40 tolerated(0.55) benign(0.017) TCGA-EE-A2GR-06 1 211534078 211534078 T A TRAF5 Missense_Mutation p.V193E 0.42 deleterious(0) possibly_damaging(0.614) TCGA-EE-A2GR-06 1 211847012 211847012 G A NEK2 Missense_Mutation p.A123V 0.53 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2GR-06 1 21562382 21562382 G A ECE1 Silent p.F509F 0.21 TCGA-EE-A2GR-06 1 216270453 216270453 C T USH2A Missense_Mutation p.G1577E 0.33 probably_damaging(1) TCGA-EE-A2GR-06 1 21887146 21887146 G A ALPL Missense_Mutation p.R30Q 0.33 deleterious(0.02) possibly_damaging(0.493) TCGA-EE-A2GR-06 1 21889719 21889719 G A ALPL Silent p.R138R 0.15 TCGA-EE-A2GR-06 1 22203098 22203098 G A HSPG2 Silent p.F911F 0.30 TCGA-EE-A2GR-06 1 222696044 222696044 G A HHIPL2 Missense_Mutation p.P692S 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2GR-06 1 226026479 226026479 C T EPHX1 Silent p.L163L 0.54 TCGA-EE-A2GR-06 1 227152872 227152872 C T ADCK3 Missense_Mutation p.P117S 0.18 tolerated_low_confidence(0.26) benign(0.003) TCGA-EE-A2GR-06 1 228466962 228466962 C T OBSCN Missense_Mutation p.P2834S 0.38 probably_damaging(0.983) TCGA-EE-A2GR-06 1 229771705 229771705 C T URB2 Nonsense_Mutation p.Q449* 0.45 TCGA-EE-A2GR-06 1 230838875 230838875 G A AGT 3'UTR 0.49 TCGA-EE-A2GR-06 1 231906692 231906692 C T DISC1 Silent p.L504L 0.44 TCGA-EE-A2GR-06 1 23222940 23222940 G A EPHB2 Silent p.T579T 0.14 TCGA-EE-A2GR-06 1 232942542 232942542 G A MAP10 Silent p.K591K 0.23 TCGA-EE-A2GR-06 1 233134174 233134174 C T PCNXL2 Missense_Mutation p.D1872N 0.42 tolerated(0.44) benign(0.066) TCGA-EE-A2GR-06 1 233802489 233802489 C T KCNK1 Silent p.F168F 0.18 TCGA-EE-A2GR-06 1 235827771 235827771 A C LYST Missense_Mutation p.I3730S 0.14 tolerated(0.15) benign(0.074) TCGA-EE-A2GR-06 1 236343290 236343290 C T GPR137B Missense_Mutation p.H267Y 0.18 deleterious(0.03) benign(0.138) TCGA-EE-A2GR-06 1 236645793 236645793 C T EDARADD Silent p.T164T 0.32 TCGA-EE-A2GR-06 1 236711506 236711506 C T LGALS8 3'UTR 0.30 TCGA-EE-A2GR-06 1 23758271 23758271 G A ASAP3 Missense_Mutation p.L822F 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.453) TCGA-EE-A2GR-06 1 237802470 237802470 C T RYR2 Missense_Mutation p.P2362S 0.46 probably_damaging(0.933) TCGA-EE-A2GR-06 1 237880614 237880614 C T RYR2 Silent p.I3480I 0.48 TCGA-EE-A2GR-06 1 240370439 240370439 G A FMN2 Missense_Mutation p.G776E 0.16 unknown(0) TCGA-EE-A2GR-06 1 241031931 241031931 G A RGS7 Missense_Mutation p.L189F 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 1 241031944 241031944 A C RGS7 Missense_Mutation p.I184M 0.22 tolerated(0.23) possibly_damaging(0.668) TCGA-EE-A2GR-06 1 245850440 245850440 C T KIF26B Silent p.I1385I 0.29 TCGA-EE-A2GR-06 1 246711899 246711899 G A TFB2M Missense_Mutation p.S269L 0.44 deleterious(0.03) benign(0.39) TCGA-EE-A2GR-06 1 247588301 247588301 G A NLRP3 Missense_Mutation p.S519N 0.62 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 1 247695323 247695323 G A OR2C3 Missense_Mutation p.T164I 0.52 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2GR-06 1 247712378 247712378 G A GCSAML 5'Flank 0.56 TCGA-EE-A2GR-06 1 247752097 247752097 G A OR2G2 Missense_Mutation p.A146T 0.46 tolerated(0.48) benign(0.014) TCGA-EE-A2GR-06 1 247920864 247920864 G A OR1C1 Missense_Mutation p.A282V 0.47 deleterious(0.01) benign(0.067) TCGA-EE-A2GR-06 1 248059200 248059200 C T OR2W3 Silent p.F104F 0.16 TCGA-EE-A2GR-06 1 248512199 248512199 C T OR14C36 Silent p.I41I 0.54 TCGA-EE-A2GR-06 1 248551364 248551364 G A OR2T6 Missense_Mutation p.G152E 0.33 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GR-06 1 25569092 25569092 C T C1orf63 Nonsense_Mutation p.W287* 0.29 TCGA-EE-A2GR-06 1 26620703 26620703 C T UBXN11 Nonsense_Mutation p.W184* 0.33 TCGA-EE-A2GR-06 1 27661951 27661951 C T TMEM222 Silent p.L207L 0.38 TCGA-EE-A2GR-06 1 28279788 28279788 G A SMPDL3B Missense_Mutation p.G146R 0.24 tolerated(0.46) benign(0.071) TCGA-EE-A2GR-06 1 28476473 28476473 G A PTAFR 3'UTR 0.28 TCGA-EE-A2GR-06 1 29631876 29631876 G A PTPRU Missense_Mutation p.R929Q 0.69 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 1 31194579 31194579 C T MATN1 Silent p.R38R 0.59 TCGA-EE-A2GR-06 1 32560520 32560520 G A TMEM39B Missense_Mutation p.G355S 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2GR-06 1 32626295 32626295 C T KPNA6 Missense_Mutation p.P213L 0.41 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A2GR-06 1 32687997 32687997 T A EIF3I 5'UTR 0.26 TCGA-EE-A2GR-06 1 32751132 32751132 G A LCK Missense_Mutation p.V449M 0.66 deleterious(0) probably_damaging(0.984) TCGA-EE-A2GR-06 1 33246732 33246732 C T YARS Missense_Mutation p.G353S 0.26 tolerated(0.41) benign(0.003) TCGA-EE-A2GR-06 1 3397041 3397041 G A ARHGEF16 Missense_Mutation p.G674R 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 3397042 3397042 G A ARHGEF16 Missense_Mutation p.G674E 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 34035099 34035099 C T CSMD2 Missense_Mutation p.G2671E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 34238196 34238196 C T CSMD2 Nonsense_Mutation p.W567* 0.32 TCGA-EE-A2GR-06 1 36379561 36379561 C T AGO1 Silent p.V567V 0.17 TCGA-EE-A2GR-06 1 36748237 36748237 C T THRAP3 Missense_Mutation p.R25C 0.54 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A2GR-06 1 36945039 36945039 G A CSF3R Missense_Mutation p.P20L 0.16 deleterious(0.04) benign(0.049) TCGA-EE-A2GR-06 1 37270690 37270690 G A GRIK3 Silent p.I821I 0.32 TCGA-EE-A2GR-06 1 39847728 39847728 C T MACF1 Silent p.L2522L 0.17 TCGA-EE-A2GR-06 1 39926444 39926444 T A MACF1 Missense_Mutation p.F5108L 0.70 possibly_damaging(0.869) TCGA-EE-A2GR-06 1 42047722 42047722 G A HIVEP3 Missense_Mutation p.S916L 0.60 probably_damaging(0.996) TCGA-EE-A2GR-06 1 43772659 43772659 C T TIE1 Silent p.I211I 0.27 TCGA-EE-A2GR-06 1 43783010 43783010 C T TIE1 Silent p.F850F 0.70 TCGA-EE-A2GR-06 1 44595442 44595442 C T KLF17 Missense_Mutation p.P167S 0.32 tolerated(0.52) benign(0.128) TCGA-EE-A2GR-06 1 46180087 46180087 G A IPP Missense_Mutation p.S454F 0.27 tolerated(0.35) possibly_damaging(0.857) TCGA-EE-A2GR-06 1 47407056 47407056 C T CYP4A11 Missense_Mutation p.G17E 0.23 tolerated(0.14) benign(0.228) TCGA-EE-A2GR-06 1 57425765 57425765 G A C8B Silent p.T59T 0.64 TCGA-EE-A2GR-06 1 63872018 63872018 C T ALG6 Missense_Mutation p.P126L 0.23 deleterious(0) possibly_damaging(0.856) TCGA-EE-A2GR-06 1 64672498 64672498 C T UBE2U Missense_Mutation p.P67L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 66384348 66384348 C T PDE4B Silent p.I37I 0.17 TCGA-EE-A2GR-06 1 70339239 70339239 C T LRRC7 Intron 0.36 TCGA-EE-A2GR-06 1 71318503 71318503 C T PTGER3 3'UTR 0.29 TCGA-EE-A2GR-06 1 75055165 75055165 G A C1orf173 Intron 0.41 TCGA-EE-A2GR-06 1 75172857 75172857 A G CRYZ Missense_Mutation p.I221T 0.32 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GR-06 1 75608860 75608860 C T LHX8 Silent p.V149V 0.27 TCGA-EE-A2GR-06 1 7798031 7798031 C T CAMTA1 Missense_Mutation p.P1224L 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GR-06 1 79392653 79392653 G A ELTD1 Missense_Mutation p.S334L 0.35 tolerated(0.17) benign(0.297) TCGA-EE-A2GR-06 1 85418174 85418174 G A MCOLN2 Missense_Mutation p.P202L 0.70 tolerated(0.1) benign(0.075) TCGA-EE-A2GR-06 1 85418175 85418175 G A MCOLN2 Missense_Mutation p.P202S 0.70 tolerated(0.41) benign(0.004) TCGA-EE-A2GR-06 1 86200455 86200455 T A COL24A1 Nonsense_Mutation p.K1659* 0.27 TCGA-EE-A2GR-06 1 86920861 86920861 C T CLCA2 Missense_Mutation p.P828L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 1 87045096 87045096 G A CLCA4 Missense_Mutation p.E728K 0.31 tolerated(0.48) possibly_damaging(0.492) TCGA-EE-A2GR-06 1 89615181 89615181 C T GBP7 Missense_Mutation p.A316T 0.29 tolerated(0.98) benign(0.001) TCGA-EE-A2GR-06 1 94512554 94512554 C T ABCA4 Missense_Mutation p.D947N 0.34 tolerated(0.3) benign(0.082) TCGA-EE-A2GR-06 20 10630941 10630941 A G JAG1 Silent p.F396F 0.42 TCGA-EE-A2GR-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.28 tolerated(0.25) probably_damaging(0.996) TCGA-EE-A2GR-06 20 15210628 15210628 A T MACROD2 Missense_Mutation p.N154I 0.28 deleterious(0.04) possibly_damaging(0.694) TCGA-EE-A2GR-06 20 1532558 1532558 C T SIRPD Missense_Mutation p.G67E 0.41 deleterious(0.02) possibly_damaging(0.705) TCGA-EE-A2GR-06 20 1585390 1585390 C T SIRPB1 Intron 0.29 TCGA-EE-A2GR-06 20 18724887 18724887 G A DTD1 Silent p.R207R 0.23 TCGA-EE-A2GR-06 20 23065308 23065308 C T CD93 Missense_Mutation p.G508S 0.54 tolerated(0.64) benign(0.045) TCGA-EE-A2GR-06 20 23065309 23065309 C T CD93 Silent p.E507E 0.54 TCGA-EE-A2GR-06 20 2413357 2413357 C T TGM6 3'UTR 0.75 TCGA-EE-A2GR-06 20 25056959 25056959 G A VSX1 Nonsense_Mutation p.Q346* 0.42 TCGA-EE-A2GR-06 20 25282881 25282881 C T ABHD12 Silent p.K377K 0.39 TCGA-EE-A2GR-06 20 30253716 30253716 G A BCL2L1 3'UTR 0.52 TCGA-EE-A2GR-06 20 31573680 31573680 G A SUN5 Silent p.A253A 0.59 TCGA-EE-A2GR-06 20 31606447 31606447 T C BPIFB2 Missense_Mutation p.V225A 0.46 tolerated(0.42) benign(0.004) TCGA-EE-A2GR-06 20 31967344 31967344 G A CDK5RAP1 Silent p.L344L 0.37 TCGA-EE-A2GR-06 20 33329378 33329378 T C NCOA6 Missense_Mutation p.H1561R 0.28 benign(0.001) TCGA-EE-A2GR-06 20 33517333 33517333 T A GSS Missense_Mutation p.E391V 0.42 deleterious(0) possibly_damaging(0.81) TCGA-EE-A2GR-06 20 33879806 33879806 C T FAM83C Missense_Mutation p.G101E 0.41 tolerated(0.05) probably_damaging(1) TCGA-EE-A2GR-06 20 34220719 34220719 C T CPNE1 Missense_Mutation p.E48K 0.18 deleterious(0) possibly_damaging(0.84) TCGA-EE-A2GR-06 20 3655171 3655171 G A ADAM33 Missense_Mutation p.P194S 0.31 tolerated(0.8) benign(0.001) TCGA-EE-A2GR-06 20 36760877 36760877 G A TGM2 Silent p.L547L 0.48 TCGA-EE-A2GR-06 20 3677314 3677314 G A SIGLEC1 Missense_Mutation p.L868F 0.38 deleterious(0.04) probably_damaging(0.978) TCGA-EE-A2GR-06 20 3677315 3677315 G C SIGLEC1 Silent p.G867G 0.38 TCGA-EE-A2GR-06 20 3725567 3725567 C T HSPA12B Silent p.D95D 0.31 TCGA-EE-A2GR-06 20 3725568 3725568 C T HSPA12B Missense_Mutation p.P96S 0.32 tolerated(0.16) benign(0.198) TCGA-EE-A2GR-06 20 37356686 37356686 G A SLC32A1 Missense_Mutation p.G328S 0.32 deleterious(0.02) possibly_damaging(0.893) TCGA-EE-A2GR-06 20 39708772 39708772 C T TOP1 Missense_Mutation p.P128L 0.15 deleterious(0) benign(0.023) TCGA-EE-A2GR-06 20 41100959 41100959 T C PTPRT Missense_Mutation p.N466S 0.45 tolerated(0.06) benign(0.446) TCGA-EE-A2GR-06 20 42697299 42697299 C T TOX2 Silent p.P498P 0.38 TCGA-EE-A2GR-06 20 43378776 43378776 G A KCNK15 Missense_Mutation p.G97D 0.25 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GR-06 20 43926853 43926853 G A MATN4 Silent p.S461S 0.46 TCGA-EE-A2GR-06 20 44108284 44108284 C T WFDC2 Intron 0.57 TCGA-EE-A2GR-06 20 44669997 44669997 C T SLC12A5 Missense_Mutation p.S318F 0.24 deleterious(0) possibly_damaging(0.702) TCGA-EE-A2GR-06 20 44672558 44672558 C T SLC12A5 Silent p.V483V 0.59 TCGA-EE-A2GR-06 20 45131127 45131127 C T ZNF334 Missense_Mutation p.R284Q 0.29 tolerated(1) benign(0) TCGA-EE-A2GR-06 20 45702837 45702837 C T EYA2 Missense_Mutation p.P175L 0.47 tolerated(0.05) benign(0.127) TCGA-EE-A2GR-06 20 45809551 45809551 C T EYA2 Missense_Mutation p.P468S 0.29 deleterious(0.05) probably_damaging(0.956) TCGA-EE-A2GR-06 20 45916029 45916029 C T ZMYND8 Splice_Site p.X250_splice 0.26 TCGA-EE-A2GR-06 20 47734358 47734358 G A STAU1 Missense_Mutation p.P489S 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2GR-06 20 48568687 48568687 C T RNF114 3'UTR 0.22 TCGA-EE-A2GR-06 20 49354422 49354422 T A PARD6B Missense_Mutation p.L32Q 0.46 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GR-06 20 56136498 56136498 C T PCK1 Missense_Mutation p.L11F 0.37 tolerated(0.68) benign(0) TCGA-EE-A2GR-06 20 56137213 56137213 C T PCK1 Missense_Mutation p.P104L 0.49 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GR-06 20 56138162 56138162 C T PCK1 Missense_Mutation p.S230F 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 20 57274285 57274285 C T NPEPL1 Silent p.I210I 0.44 TCGA-EE-A2GR-06 20 57766405 57766405 C T ZNF831 Missense_Mutation p.P111S 0.40 tolerated(0.08) possibly_damaging(0.846) TCGA-EE-A2GR-06 20 58883571 58883571 C T MIR646 RNA 0.24 TCGA-EE-A2GR-06 20 60575634 60575634 G A TAF4 Missense_Mutation p.P877L 0.40 benign(0.047) TCGA-EE-A2GR-06 20 60772927 60772927 C T MTG2 Silent p.S124S 0.37 TCGA-EE-A2GR-06 20 60791352 60791352 G C HRH3 Missense_Mutation p.L350V 0.44 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 20 61143403 61143403 C T C20orf166 5'Flank 0.45 TCGA-EE-A2GR-06 20 61511438 61511438 G A DIDO1 Missense_Mutation p.P1957L 0.42 possibly_damaging(0.764) TCGA-EE-A2GR-06 20 62421195 62421195 G A ZBTB46 Missense_Mutation p.P306S 0.55 tolerated(0.13) benign(0.059) TCGA-EE-A2GR-06 20 62421999 62421999 C T ZBTB46 Missense_Mutation p.E38K 0.52 tolerated(0.08) possibly_damaging(0.777) TCGA-EE-A2GR-06 20 62699471 62699471 G A TCEA2 Missense_Mutation p.E105K 0.35 tolerated(0.52) benign(0.002) TCGA-EE-A2GR-06 20 8678363 8678363 G A PLCB1 Missense_Mutation p.G367E 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 20 8769119 8769119 C T PLCB1 Silent p.V1045V 0.52 TCGA-EE-A2GR-06 20 896618 896618 C T ANGPT4 Silent p.G80G 0.47 TCGA-EE-A2GR-06 20 9364916 9364916 C T PLCB4 Missense_Mutation p.R308C 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 20 9365010 9365010 G A PLCB4 Missense_Mutation p.G339E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 20 9538296 9538296 C T PAK7 Missense_Mutation p.D568N 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 21 10951345 10951345 G A TPTE Missense_Mutation p.P123S 0.19 tolerated(0.18) benign(0.046) TCGA-EE-A2GR-06 21 11038972 11038972 T G BAGE2 RNA 0.07 TCGA-EE-A2GR-06 21 11097569 11097569 C T BAGE2 RNA 0.11 TCGA-EE-A2GR-06 21 18931355 18931355 G A CXADR Silent p.K159K 0.40 TCGA-EE-A2GR-06 21 19716332 19716332 C T TMPRSS15 Missense_Mutation p.R406Q 0.48 tolerated(0.06) benign(0.087) TCGA-EE-A2GR-06 21 27840827 27840827 C T CYYR1 Missense_Mutation p.R153K 0.60 deleterious_low_confidence(0.03) benign(0.171) TCGA-EE-A2GR-06 21 28296630 28296630 G A ADAMTS5 Silent p.V845V 0.45 TCGA-EE-A2GR-06 21 32185334 32185334 G A KRTAP8-1 3'UTR 0.27 TCGA-EE-A2GR-06 21 35260506 35260506 G A ITSN1 Missense_Mutation p.G1690S 0.33 tolerated(0.31) possibly_damaging(0.519) TCGA-EE-A2GR-06 21 35469535 35469535 G A SLC5A3 Missense_Mutation p.E680K 0.49 tolerated(0.55) benign(0.035) TCGA-EE-A2GR-06 21 36088829 36088829 G A CLIC6 3'UTR 0.26 TCGA-EE-A2GR-06 21 37602940 37602940 G A DOPEY2 Missense_Mutation p.G620S 0.36 deleterious(0.03) benign(0.371) TCGA-EE-A2GR-06 21 37736479 37736479 C T MORC3 Missense_Mutation p.S514L 0.39 tolerated(0.17) benign(0.027) TCGA-EE-A2GR-06 21 38117419 38117419 C T SIM2 Silent p.L520L 0.50 TCGA-EE-A2GR-06 21 38390367 38390367 G A RIPPLY3 Missense_Mutation p.E145K 0.36 tolerated(0.1) possibly_damaging(0.801) TCGA-EE-A2GR-06 21 38538328 38538328 C T TTC3 Missense_Mutation p.P1271L 0.60 tolerated(0.52) benign(0.003) TCGA-EE-A2GR-06 21 38538329 38538329 C T TTC3 Silent p.P1271P 0.60 TCGA-EE-A2GR-06 21 39086964 39086964 C T KCNJ6 Missense_Mutation p.E166K 0.42 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A2GR-06 21 41725524 41725524 A T DSCAM Missense_Mutation p.S268T 0.50 tolerated(0.25) benign(0.065) TCGA-EE-A2GR-06 21 43256264 43256264 C G PRDM15 Missense_Mutation p.E778D 0.54 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A2GR-06 21 43508581 43508581 C T UMODL1 Nonsense_Mutation p.Q261* 0.42 TCGA-EE-A2GR-06 21 43838513 43838513 C T UBASH3A Silent p.L281L 0.37 TCGA-EE-A2GR-06 21 43897548 43897548 C T RSPH1 Missense_Mutation p.G194R 0.37 tolerated(0.17) possibly_damaging(0.828) TCGA-EE-A2GR-06 21 44589158 44589158 G A CRYAA 5'UTR 0.50 TCGA-EE-A2GR-06 21 45657027 45657027 G A ICOSLG Silent p.S43S 0.16 TCGA-EE-A2GR-06 22 17581300 17581300 C T IL17RA Missense_Mutation p.T160I 0.25 tolerated(0.07) possibly_damaging(0.824) TCGA-EE-A2GR-06 22 18300316 18300316 G A MICAL3 Missense_Mutation p.S1704F 0.35 probably_damaging(0.997) TCGA-EE-A2GR-06 22 18300783 18300783 G A MICAL3 Silent p.S1548S 0.33 TCGA-EE-A2GR-06 22 19371175 19371175 G A HIRA Silent p.I461I 0.44 TCGA-EE-A2GR-06 22 19776181 19776181 T C GNB1L 3'UTR 0.15 TCGA-EE-A2GR-06 22 19951781 19951781 C T COMT Missense_Mutation p.H192Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 22 20020709 20020709 C T TANGO2 Intron 0.55 TCGA-EE-A2GR-06 22 20760718 20760718 C T ZNF74 Silent p.I465I 0.20 TCGA-EE-A2GR-06 22 21344752 21344752 C A LZTR1 Missense_Mutation p.F243L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 22 22277752 22277752 C T PPM1F Missense_Mutation p.D360N 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 22 22843293 22843293 G A ZNF280B Missense_Mutation p.P144L 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A2GR-06 22 22843294 22843294 G A ZNF280B Missense_Mutation p.P144S 0.18 tolerated(0.2) possibly_damaging(0.702) TCGA-EE-A2GR-06 22 22989341 22989341 C T GGTLC2 Silent p.F98F 0.42 TCGA-EE-A2GR-06 22 23077451 23077451 C T IGLV2-18 Silent p.P76P 0.22 TCGA-EE-A2GR-06 22 23235904 23235904 G A IGLL5 Silent p.Q77Q 0.54 TCGA-EE-A2GR-06 22 24167501 24167501 G A SMARCB1 Silent p.L295L 0.49 TCGA-EE-A2GR-06 22 24447308 24447308 T A CABIN1 Silent p.V226V 0.51 TCGA-EE-A2GR-06 22 24916373 24916373 C T UPB1 Silent p.I270I 0.36 TCGA-EE-A2GR-06 22 26422687 26422687 C T MYO18B Silent p.A2249A 0.58 TCGA-EE-A2GR-06 22 26690284 26690284 C T SEZ6L Missense_Mutation p.P288S 0.43 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GR-06 22 26743840 26743840 G A SEZ6L Missense_Mutation p.D790N 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 22 29383122 29383122 G T ZNRF3 Missense_Mutation p.W120L 0.38 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GR-06 22 29445766 29445766 C T ZNRF3 Missense_Mutation p.H533Y 0.53 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GR-06 22 29833773 29833773 G A RFPL1 5'Flank 0.24 TCGA-EE-A2GR-06 22 30494852 30494852 C T HORMAD2 Silent p.F21F 0.40 TCGA-EE-A2GR-06 22 30864607 30864607 C T SEC14L3 Missense_Mutation p.G104E 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 22 31529413 31529413 G A INPP5J Missense_Mutation p.D417N 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 22 36689450 36689450 G A MYH9 Silent p.S1340S 0.22 TCGA-EE-A2GR-06 22 37494479 37494479 C T TMPRSS6 Missense_Mutation p.E114K 0.49 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GR-06 22 37622712 37622712 C T RAC2 Intron 0.58 TCGA-EE-A2GR-06 22 37688669 37688669 G A CYTH4 Silent p.A9A 0.38 TCGA-EE-A2GR-06 22 38245426 38245426 C T EIF3L 5'UTR 0.53 TCGA-EE-A2GR-06 22 38369572 38369572 G A SOX10 Missense_Mutation p.P444L 0.44 tolerated(0.36) possibly_damaging(0.617) TCGA-EE-A2GR-06 22 38369573 38369573 G A SOX10 Missense_Mutation p.P444S 0.40 tolerated(0.32) benign(0.03) TCGA-EE-A2GR-06 22 39219171 39219171 C T NPTXR Missense_Mutation p.G399R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 22 40706893 40706893 C A TNRC6B Missense_Mutation p.T1444K 0.35 tolerated(0.11) benign(0.097) TCGA-EE-A2GR-06 22 42128505 42128505 C T MEI1 Missense_Mutation p.S410L 0.42 tolerated(0.37) probably_damaging(0.99) TCGA-EE-A2GR-06 22 42456378 42456378 G A NAGA Nonsense_Mutation p.R381* 0.49 TCGA-EE-A2GR-06 22 42456379 42456379 G A NAGA Silent p.L380L 0.49 TCGA-EE-A2GR-06 22 43089082 43089082 C T A4GALT Nonsense_Mutation p.W292* 0.29 TCGA-EE-A2GR-06 22 43616506 43616506 G A SCUBE1 Missense_Mutation p.S546F 0.21 deleterious(0.02) possibly_damaging(0.555) TCGA-EE-A2GR-06 22 43654224 43654224 C T SCUBE1 Splice_Site p.X243_splice 0.35 TCGA-EE-A2GR-06 22 44083391 44083391 A G EFCAB6 Silent p.L368L 0.44 TCGA-EE-A2GR-06 22 44602292 44602292 G A PARVG Missense_Mutation p.G328R 0.67 tolerated_low_confidence(0.18) benign(0.013) TCGA-EE-A2GR-06 22 45923826 45923826 C T FBLN1 Nonsense_Mutation p.Q141* 0.30 TCGA-EE-A2GR-06 2 100170902 100170902 G A AFF3 Missense_Mutation p.P1169S 0.31 tolerated(0.44) benign(0.018) TCGA-EE-A2GR-06 2 100210262 100210262 G A AFF3 Missense_Mutation p.P646S 0.25 deleterious(0.03) benign(0.138) TCGA-EE-A2GR-06 2 100210263 100210263 G A AFF3 Silent p.V645V 0.22 TCGA-EE-A2GR-06 2 105924378 105924378 G A TGFBRAP1 Silent p.N127N 0.31 TCGA-EE-A2GR-06 2 106688311 106688311 G A C2orf40 Missense_Mutation p.G31R 0.24 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 2 107050824 107050824 G A RGPD3 Missense_Mutation p.H689Y 0.56 deleterious(0.02) benign(0.346) TCGA-EE-A2GR-06 2 107459888 107459888 C T ST6GAL2 Silent p.R182R 0.46 TCGA-EE-A2GR-06 2 113405310 113405310 C T SLC20A1 Missense_Mutation p.H186Y 0.63 deleterious(0.04) benign(0.028) TCGA-EE-A2GR-06 2 116538447 116538447 C T DPP10 Intron 0.31 TCGA-EE-A2GR-06 2 120003549 120003549 G A STEAP3 Silent p.R169R 0.26 TCGA-EE-A2GR-06 2 121712924 121712924 C T GLI2 Silent p.P187P 0.26 TCGA-EE-A2GR-06 2 121748125 121748125 C T GLI2 Silent p.T1545T 0.29 TCGA-EE-A2GR-06 2 122217648 122217648 G A CLASP1 Silent p.F362F 0.29 TCGA-EE-A2GR-06 2 128757395 128757395 G A SAP130 Missense_Mutation p.P404L 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-EE-A2GR-06 2 130832640 130832640 G A POTEF Missense_Mutation p.P802L 0.29 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-EE-A2GR-06 2 136396503 136396503 C T R3HDM1 Missense_Mutation p.H344Y 0.28 deleterious(0.01) benign(0.001) TCGA-EE-A2GR-06 2 136562526 136562526 G A LCT Silent p.A1425A 0.21 TCGA-EE-A2GR-06 2 136873224 136873224 G A CXCR4 Missense_Mutation p.P96S 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 2 136875622 136875622 C T CXCR4 5'Flank 0.55 TCGA-EE-A2GR-06 2 137872762 137872762 A G THSD7B Missense_Mutation p.H423R 0.14 tolerated(1) benign(0.402) TCGA-EE-A2GR-06 2 137872823 137872823 C T THSD7B Silent p.A443A 0.50 TCGA-EE-A2GR-06 2 137872824 137872824 C T THSD7B Nonsense_Mutation p.Q444* 0.67 TCGA-EE-A2GR-06 2 137928389 137928389 T C THSD7B Missense_Mutation p.V535A 0.57 deleterious(0) benign(0.294) TCGA-EE-A2GR-06 2 141081578 141081578 G A LRP1B Missense_Mutation p.P4133L 0.40 possibly_damaging(0.713) TCGA-EE-A2GR-06 2 141143549 141143549 G A LRP1B Nonsense_Mutation p.Q3482* 0.53 TCGA-EE-A2GR-06 2 141201961 141201961 G A LRP1B Missense_Mutation p.P3411L 0.61 possibly_damaging(0.908) TCGA-EE-A2GR-06 2 141264456 141264456 G A LRP1B Silent p.F2810F 0.64 TCGA-EE-A2GR-06 2 141747168 141747168 C T LRP1B Silent p.K901K 0.42 TCGA-EE-A2GR-06 2 141747170 141747170 T A LRP1B Nonsense_Mutation p.K901* 0.41 TCGA-EE-A2GR-06 2 1488370 1488370 C T TPO Silent p.I447I 0.56 TCGA-EE-A2GR-06 2 152354181 152354181 C T NEB Missense_Mutation p.E8087K 0.33 possibly_damaging(0.486) TCGA-EE-A2GR-06 2 152507129 152507129 C T NEB Missense_Mutation p.D2396N 0.70 benign(0.054) TCGA-EE-A2GR-06 2 165984148 165984148 C T SCN3A Missense_Mutation p.S1129N 0.40 tolerated(0.1) benign(0.258) TCGA-EE-A2GR-06 2 167129258 167129258 T A SCN9A Missense_Mutation p.Y990F 0.21 tolerated(1) benign(0.177) TCGA-EE-A2GR-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.30 benign(0.002) TCGA-EE-A2GR-06 2 168726441 168726441 C T B3GALT1 Missense_Mutation p.R298C 0.23 deleterious(0.04) possibly_damaging(0.872) TCGA-EE-A2GR-06 2 172563838 172563838 C T DYNC1I2 Missense_Mutation p.P96S 0.34 deleterious(0.02) possibly_damaging(0.49) TCGA-EE-A2GR-06 2 172563839 172563839 C T DYNC1I2 Missense_Mutation p.P96L 0.34 deleterious(0.01) possibly_damaging(0.655) TCGA-EE-A2GR-06 2 175087785 175087806 AGGCACTAATATGAGATAAAAA - OLA1 Frame_Shift_Del p.F110Vfs*7 0.23 TCGA-EE-A2GR-06 2 175436895 175436895 G A WIPF1 Missense_Mutation p.P213L 0.66 deleterious(0.02) benign(0.164) TCGA-EE-A2GR-06 2 175436896 175436896 G A WIPF1 Missense_Mutation p.P213S 0.69 tolerated(0.51) benign(0.005) TCGA-EE-A2GR-06 2 178299132 178299132 A C AGPS Missense_Mutation p.K143T 0.60 tolerated(0.06) benign(0.007) TCGA-EE-A2GR-06 2 17877687 17877687 A T SMC6 Missense_Mutation p.L801I 0.54 tolerated(0.07) probably_damaging(0.983) TCGA-EE-A2GR-06 2 179396953 179396953 C T TTN Missense_Mutation p.E34797K 0.60 TCGA-EE-A2GR-06 2 179399330 179399330 C T TTN Silent p.L34004L 0.33 TCGA-EE-A2GR-06 2 179426117 179426117 G A TTN Missense_Mutation p.P28248S 0.23 TCGA-EE-A2GR-06 2 179436312 179436312 C T TTN Silent p.R24849R 0.46 TCGA-EE-A2GR-06 2 179436313 179436313 C T TTN Missense_Mutation p.R24849Q 0.52 TCGA-EE-A2GR-06 2 179453449 179453449 C T TTN Silent p.E21001E 0.30 TCGA-EE-A2GR-06 2 179456883 179456883 C A TTN Missense_Mutation p.R19916S 0.31 TCGA-EE-A2GR-06 2 179457984 179457984 C T TTN Missense_Mutation p.E19651K 0.29 TCGA-EE-A2GR-06 2 179554063 179554063 C T TTN Silent p.R10655R 0.58 TCGA-EE-A2GR-06 2 179570047 179570047 C T TTN Missense_Mutation p.E9820K 0.57 TCGA-EE-A2GR-06 2 179574513 179574513 G A TTN Silent p.F9511F 0.29 TCGA-EE-A2GR-06 2 179579723 179579723 G A TTN Silent p.I8730I 0.31 TCGA-EE-A2GR-06 2 179585319 179585319 C T TTN Missense_Mutation p.E7724K 0.30 TCGA-EE-A2GR-06 2 179592543 179592543 C T TTN Missense_Mutation p.D6588N 0.24 TCGA-EE-A2GR-06 2 179592958 179592958 G A TTN Silent p.C6531C 0.15 TCGA-EE-A2GR-06 2 179594940 179594940 C T TTN Missense_Mutation p.D6063N 0.42 TCGA-EE-A2GR-06 2 179604360 179604360 C T TTN Missense_Mutation p.E4534K 0.19 TCGA-EE-A2GR-06 2 179621069 179621069 C T TTN Missense_Mutation p.G3712R 0.24 TCGA-EE-A2GR-06 2 179623863 179623863 A C TTN Missense_Mutation p.I3384S 0.61 TCGA-EE-A2GR-06 2 179646961 179646961 C A TTN Missense_Mutation p.V1120F 0.56 TCGA-EE-A2GR-06 2 179647683 179647683 C T TTN Missense_Mutation p.E984K 0.23 TCGA-EE-A2GR-06 2 183623904 183623904 C T DNAJC10 Missense_Mutation p.S672F 0.24 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GR-06 2 183960158 183960158 G A DUSP19 Splice_Site p.X143_splice 0.59 TCGA-EE-A2GR-06 2 186672248 186672248 C T FSIP2 Missense_Mutation p.T6161I 0.26 benign(0.152) TCGA-EE-A2GR-06 2 186672249 186672249 C T FSIP2 Silent p.T6161T 0.26 TCGA-EE-A2GR-06 2 187692922 187692922 C T ZSWIM2 Missense_Mutation p.R564K 0.32 tolerated(0.27) benign(0.005) TCGA-EE-A2GR-06 2 187698678 187698678 G A ZSWIM2 Missense_Mutation p.R275C 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 2 187702047 187702047 C T ZSWIM2 Silent p.E243E 0.28 TCGA-EE-A2GR-06 2 188331662 188331662 T C TFPI 3'UTR 0.58 TCGA-EE-A2GR-06 2 191897874 191897874 C T STAT4 Silent p.G618G 0.32 TCGA-EE-A2GR-06 2 1926200 1926200 G A MYT1L Silent p.A447A 0.40 TCGA-EE-A2GR-06 2 197185126 197185126 G A HECW2 Missense_Mutation p.P308S 0.69 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2GR-06 2 197650231 197650231 G A GTF3C3 Silent p.S325S 0.56 TCGA-EE-A2GR-06 2 1983500 1983500 A G MYT1L Missense_Mutation p.V17A 0.33 tolerated(0.05) unknown(0) TCGA-EE-A2GR-06 2 201480694 201480694 G A AOX1 Missense_Mutation p.D538N 0.29 tolerated(0.31) benign(0.001) TCGA-EE-A2GR-06 2 201681928 201681928 C T BZW1 Missense_Mutation p.L200F 0.19 deleterious(0.02) possibly_damaging(0.728) TCGA-EE-A2GR-06 2 202073988 202073988 C T CASP10 Missense_Mutation p.P373L 0.26 tolerated(0.08) possibly_damaging(0.773) TCGA-EE-A2GR-06 2 202558753 202558753 C T MPP4 5'UTR 0.42 TCGA-EE-A2GR-06 2 203680689 203680689 G A ICA1L Missense_Mutation p.S243F 0.57 deleterious(0.02) possibly_damaging(0.723) TCGA-EE-A2GR-06 2 203693696 203693696 G A ICA1L Nonsense_Mutation p.Q13* 0.63 TCGA-EE-A2GR-06 2 207170117 207170117 C T ZDBF2 Missense_Mutation p.H289Y 0.75 deleterious(0.04) benign(0.002) TCGA-EE-A2GR-06 2 207171931 207171931 G A ZDBF2 Silent p.K893K 0.64 TCGA-EE-A2GR-06 2 207530685 207530685 C T DYTN Missense_Mutation p.R350K 0.20 tolerated(1) benign(0) TCGA-EE-A2GR-06 2 212248279 212248279 G A ERBB4 3'UTR 0.32 TCGA-EE-A2GR-06 2 21239422 21239422 C T APOB Missense_Mutation p.G1074E 0.36 probably_damaging(0.999) TCGA-EE-A2GR-06 2 21251243 21251243 G A APOB Silent p.S595S 0.31 TCGA-EE-A2GR-06 2 213872409 213872409 G A IKZF2 Missense_Mutation p.S419F 0.33 deleterious(0.05) benign(0.018) TCGA-EE-A2GR-06 2 215840723 215840723 C T ABCA12 Missense_Mutation p.G1723R 0.46 tolerated(0.64) benign(0.002) TCGA-EE-A2GR-06 2 215890417 215890417 G A ABCA12 Missense_Mutation p.P423S 0.52 tolerated(0.25) benign(0.002) TCGA-EE-A2GR-06 2 219313997 219313997 G A VIL1 Missense_Mutation p.A808T 0.59 tolerated(0.07) benign(0.216) TCGA-EE-A2GR-06 2 219540913 219540913 C T STK36 Missense_Mutation p.P199L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 2 219540914 219540914 C T STK36 Silent p.P199P 0.25 TCGA-EE-A2GR-06 2 219564066 219564066 C T STK36 Missense_Mutation p.H1267Y 0.30 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A2GR-06 2 219888853 219888853 C T CCDC108 Missense_Mutation p.G827S 0.73 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 2 219896369 219896369 C T CCDC108 Missense_Mutation p.M219I 0.27 tolerated(0.14) benign(0.038) TCGA-EE-A2GR-06 2 220338472 220338472 G A SPEG Missense_Mutation p.A1432T 0.27 benign(0.134) TCGA-EE-A2GR-06 2 220354500 220354500 C T SPEG Silent p.P2920P 0.36 TCGA-EE-A2GR-06 2 223484389 223484389 C T FARSB Missense_Mutation p.S440N 0.16 deleterious(0) benign(0.205) TCGA-EE-A2GR-06 2 224856534 224856534 G A SERPINE2 Missense_Mutation p.S236F 0.32 deleterious(0) probably_damaging(0.972) TCGA-EE-A2GR-06 2 226447205 226447205 C T NYAP2 Silent p.L358L 0.36 TCGA-EE-A2GR-06 2 226447216 226447216 G A NYAP2 Silent p.T361T 0.67 TCGA-EE-A2GR-06 2 227662747 227662747 G A IRS1 Silent p.F236F 0.54 TCGA-EE-A2GR-06 2 227871993 227871993 C T COL4A4 3'UTR 0.28 TCGA-EE-A2GR-06 2 228846393 228846393 G A SPHKAP 3'UTR 0.63 TCGA-EE-A2GR-06 2 228882320 228882320 C T SPHKAP Missense_Mutation p.E1084K 0.72 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 2 228882549 228882549 C T SPHKAP Silent p.T1007T 0.64 TCGA-EE-A2GR-06 2 228996724 228996724 G A SPHKAP Missense_Mutation p.P37L 0.18 tolerated(1) benign(0) TCGA-EE-A2GR-06 2 230231734 230231734 T C DNER Missense_Mutation p.M653V 0.26 tolerated(0.14) benign(0.214) TCGA-EE-A2GR-06 2 230282864 230282864 G A DNER Silent p.L523L 0.31 TCGA-EE-A2GR-06 2 233660862 233660862 G A GIGYF2 Missense_Mutation p.V545M 0.19 possibly_damaging(0.79) TCGA-EE-A2GR-06 2 233990557 233990557 G C INPP5D Missense_Mutation p.R151P 0.47 tolerated(0.18) probably_damaging(0.964) TCGA-EE-A2GR-06 2 234581143 234581143 C T UGT1A9 Missense_Mutation p.S188F 0.58 deleterious(0) probably_damaging(0.919) TCGA-EE-A2GR-06 2 237308122 237308122 C T IQCA1 Missense_Mutation p.E382K 0.19 tolerated(0.2) benign(0.097) TCGA-EE-A2GR-06 2 238277279 238277279 G A COL6A3 Silent p.I1609I 0.33 TCGA-EE-A2GR-06 2 241463580 241463580 G A ANKMY1 Silent p.S429S 0.55 TCGA-EE-A2GR-06 2 26534181 26534181 G A GPR113 Silent p.S805S 0.24 TCGA-EE-A2GR-06 2 26699765 26699765 G A OTOF Silent p.F890F 0.30 TCGA-EE-A2GR-06 2 27500758 27500758 A T DNAJC5G Missense_Mutation p.I84L 0.33 deleterious(0) benign(0.36) TCGA-EE-A2GR-06 2 27821046 27821046 C T ZNF512 Missense_Mutation p.P68S 0.73 tolerated_low_confidence(0.07) benign(0.129) TCGA-EE-A2GR-06 2 27830716 27830716 C T ZNF512 Missense_Mutation p.S314F 0.39 deleterious(0.01) benign(0.172) TCGA-EE-A2GR-06 2 29295194 29295194 C T C2orf71 Missense_Mutation p.R645K 0.35 deleterious(0.04) benign(0.192) TCGA-EE-A2GR-06 2 31484537 31484537 C T EHD3 Silent p.H346H 0.29 TCGA-EE-A2GR-06 2 31573069 31573069 G A XDH Silent p.F884F 0.38 TCGA-EE-A2GR-06 2 32706501 32706501 C T BIRC6 Missense_Mutation p.L2508F 0.77 probably_damaging(0.994) TCGA-EE-A2GR-06 2 32724828 32724828 G A BIRC6 Missense_Mutation p.G2895R 0.34 probably_damaging(0.999) TCGA-EE-A2GR-06 2 32724829 32724829 G A BIRC6 Missense_Mutation p.G2895E 0.35 probably_damaging(0.999) TCGA-EE-A2GR-06 2 32828074 32828074 T - BIRC6 Frame_Shift_Del p.C4666Vfs*2 0.15 TCGA-EE-A2GR-06 2 37041342 37041342 G A VIT Silent p.A640A 0.22 TCGA-EE-A2GR-06 2 3750043 3750043 G A ALLC Missense_Mutation p.G356R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 2 3750044 3750044 G A ALLC Missense_Mutation p.G356E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 2 39499443 39499443 G A MAP4K3 Missense_Mutation p.P652S 0.31 tolerated(0.1) probably_damaging(1) TCGA-EE-A2GR-06 2 40342499 40342499 C T SLC8A1 Missense_Mutation p.G939E 0.76 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 2 43958684 43958684 C T PLEKHH2 Silent p.S962S 0.32 TCGA-EE-A2GR-06 2 43992615 43992615 T C PLEKHH2 Missense_Mutation p.F1454L 0.29 tolerated(0.69) benign(0) TCGA-EE-A2GR-06 2 44540973 44540973 G A SLC3A1 Splice_Site p.X501_splice 0.19 TCGA-EE-A2GR-06 2 46739670 46739670 C T ATP6V1E2 Missense_Mutation p.E61K 0.25 deleterious(0.04) benign(0.334) TCGA-EE-A2GR-06 2 46840911 46840911 A G PIGF Missense_Mutation p.L81S 0.20 deleterious(0) benign(0.261) TCGA-EE-A2GR-06 2 47206012 47206012 C T TTC7A Missense_Mutation p.L244F 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 2 54175661 54175661 G A PSME4 Missense_Mutation p.L133F 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GR-06 2 61019308 61019308 C T PAPOLG Silent p.S521S 0.29 TCGA-EE-A2GR-06 2 61528560 61528560 A C USP34 Missense_Mutation p.S1283A 0.66 tolerated(0.05) benign(0.178) TCGA-EE-A2GR-06 2 61597488 61597488 G A USP34 Nonsense_Mutation p.Q407* 0.66 TCGA-EE-A2GR-06 2 70904955 70904955 C T ADD2 Missense_Mutation p.E480K 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 2 70906069 70906069 G A ADD2 Missense_Mutation p.R384C 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 2 71377056 71377056 C T MPHOSPH10 Nonsense_Mutation p.Q653* 0.33 TCGA-EE-A2GR-06 2 77746080 77746080 G A LRRTM4 Silent p.S305S 0.33 TCGA-EE-A2GR-06 2 86385725 86385725 C G IMMT Missense_Mutation p.W384C 0.33 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GR-06 2 86509330 86509330 G A REEP1 Missense_Mutation p.S30F 0.70 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 2 89117905 89117905 G A AC096579.13 RNA 0.40 TCGA-EE-A2GR-06 2 89399424 89399424 G A IGKV1-16 Silent p.F93F 0.39 TCGA-EE-A2GR-06 2 89513164 89513164 G A IGKV1-27 Missense_Mutation p.S32F 0.48 tolerated_low_confidence(0.11) benign(0.038) TCGA-EE-A2GR-06 2 8958895 8958895 G A KIDINS220 Missense_Mutation p.A46V 0.64 deleterious(0.02) possibly_damaging(0.842) TCGA-EE-A2GR-06 2 90044403 90044403 C T IGKV2D-24 Silent p.V108V 0.65 TCGA-EE-A2GR-06 2 95756221 95756221 G A MRPS5 Silent p.L326L 0.32 TCGA-EE-A2GR-06 2 98273645 98273645 G A ACTR1B Missense_Mutation p.P333L 0.43 deleterious(0) possibly_damaging(0.84) TCGA-EE-A2GR-06 3 100373676 100373676 C T GPR128 Intron 0.30 TCGA-EE-A2GR-06 3 100373774 100373774 C T GPR128 Missense_Mutation p.S492F 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GR-06 3 101476030 101476030 C T CEP97 Silent p.S339S 0.19 TCGA-EE-A2GR-06 3 102175049 102175049 C T ZPLD1 Missense_Mutation p.P130S 0.13 tolerated(0.4) benign(0.287) TCGA-EE-A2GR-06 3 10311828 10311828 A G TATDN2 Missense_Mutation p.E321G 0.17 tolerated(0.21) benign(0.008) TCGA-EE-A2GR-06 3 108724021 108724021 C T MORC1 Missense_Mutation p.E637K 0.47 tolerated(0.09) benign(0.037) TCGA-EE-A2GR-06 3 109050768 109050768 C T DPPA4 Missense_Mutation p.D97N 0.15 deleterious(0.04) possibly_damaging(0.906) TCGA-EE-A2GR-06 3 109052816 109052816 C T DPPA4 Missense_Mutation p.E27K 0.44 tolerated(0.14) benign(0.029) TCGA-EE-A2GR-06 3 11078587 11078587 C T SLC6A1 Missense_Mutation p.R579C 0.34 tolerated(0.14) benign(0.002) TCGA-EE-A2GR-06 3 111432825 111432825 G C PLCXD2 Missense_Mutation p.S239T 0.23 tolerated(0.07) benign(0.048) TCGA-EE-A2GR-06 3 111604120 111604120 G A PHLDB2 Missense_Mutation p.R399K 0.48 tolerated(0.15) benign(0.128) TCGA-EE-A2GR-06 3 111766691 111766691 C T TMPRSS7 Missense_Mutation p.A153V 0.22 deleterious(0) probably_damaging(0.956) TCGA-EE-A2GR-06 3 112546248 112546248 C T CD200R1L Silent p.G132G 0.44 TCGA-EE-A2GR-06 3 112732175 112732175 A C C3orf17 Silent p.V139V 0.41 TCGA-EE-A2GR-06 3 113003232 113003232 C T BOC Missense_Mutation p.P902S 0.48 deleterious(0.02) benign(0.017) TCGA-EE-A2GR-06 3 113003233 113003233 C T BOC Missense_Mutation p.P902L 0.48 deleterious(0.04) benign(0.03) TCGA-EE-A2GR-06 3 11301038 11301038 C T HRH1 Silent p.S105S 0.23 TCGA-EE-A2GR-06 3 114014596 114014596 C T TIGIT Missense_Mutation p.P89L 0.40 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GR-06 3 119343987 119343987 G A PLA1A Silent p.V343V 0.36 TCGA-EE-A2GR-06 3 119533863 119533863 G A NR1I2 Missense_Mutation p.G317R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 119634959 119634959 C T GSK3B Silent p.R180R 0.40 TCGA-EE-A2GR-06 3 119634960 119634960 C T GSK3B Missense_Mutation p.R180Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 119886636 119886636 G A GPR156 Missense_Mutation p.S563F 0.49 tolerated(0.24) benign(0.316) TCGA-EE-A2GR-06 3 121341642 121341642 C T FBXO40 Missense_Mutation p.H456Y 0.14 tolerated(0.13) benign(0.046) TCGA-EE-A2GR-06 3 121616367 121616367 G A SLC15A2 Missense_Mutation p.G109E 0.47 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GR-06 3 121980560 121980560 C T CASR Silent p.F226F 0.38 TCGA-EE-A2GR-06 3 121981226 121981226 C T CASR Silent p.S448S 0.19 TCGA-EE-A2GR-06 3 122001041 122001041 G A CASR Missense_Mutation p.E574K 0.20 deleterious(0.01) benign(0.189) TCGA-EE-A2GR-06 3 122002604 122002604 G A CASR Silent p.K611K 0.53 TCGA-EE-A2GR-06 3 122254822 122254822 G A PARP9 Intron 0.78 TCGA-EE-A2GR-06 3 122646731 122646731 G A SEMA5B Silent p.V306V 0.45 TCGA-EE-A2GR-06 3 126708045 126708045 C T PLXNA1 Silent p.S203S 0.17 TCGA-EE-A2GR-06 3 127325561 127325561 C T MCM2 Silent p.F334F 0.56 TCGA-EE-A2GR-06 3 127642489 127642489 G A KBTBD12 Silent p.L195L 0.47 TCGA-EE-A2GR-06 3 128182073 128182073 C T DNAJB8 Missense_Mutation p.E6K 0.28 tolerated(0.16) benign(0.041) TCGA-EE-A2GR-06 3 130287203 130287203 G C COL6A6 Missense_Mutation p.R719P 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 130881365 130881365 A G NEK11 Missense_Mutation p.K359R 0.47 tolerated(0.28) benign(0.02) TCGA-EE-A2GR-06 3 131624108 131624108 C T CPNE4 Silent p.E60E 0.45 TCGA-EE-A2GR-06 3 132051046 132051046 G A ACPP Missense_Mutation p.R105Q 0.45 tolerated(0.39) benign(0.057) TCGA-EE-A2GR-06 3 13368907 13368907 G A NUP210 Silent p.P1439P 0.53 TCGA-EE-A2GR-06 3 141328325 141328325 C T RASA2 Silent p.S763S 0.19 TCGA-EE-A2GR-06 3 141328326 141328326 C T RASA2 Missense_Mutation p.L764F 0.19 deleterious(0.03) benign(0.007) TCGA-EE-A2GR-06 3 14200020 14200020 G A XPC Missense_Mutation p.P455S 0.26 tolerated(0.42) benign(0.002) TCGA-EE-A2GR-06 3 142102197 142102197 G A XRN1 Missense_Mutation p.P854L 0.40 deleterious(0.01) possibly_damaging(0.613) TCGA-EE-A2GR-06 3 142102198 142102198 G A XRN1 Missense_Mutation p.P854S 0.37 deleterious(0.03) benign(0.126) TCGA-EE-A2GR-06 3 142840860 142840860 G T CHST2 Missense_Mutation p.S401I 0.42 deleterious(0) possibly_damaging(0.684) TCGA-EE-A2GR-06 3 148905923 148905923 C T CP Missense_Mutation p.E594K 0.28 deleterious(0.05) benign(0.006) TCGA-EE-A2GR-06 3 150903248 150903248 G A MED12L Silent p.E542E 0.55 TCGA-EE-A2GR-06 3 151165794 151165794 G A IGSF10 Nonsense_Mutation p.Q659* 0.23 TCGA-EE-A2GR-06 3 153909092 153909092 C T ARHGEF26 Missense_Mutation p.S552F 0.58 deleterious(0.01) possibly_damaging(0.516) TCGA-EE-A2GR-06 3 161220122 161220122 G A OTOL1 Missense_Mutation p.G161E 0.17 deleterious(0) unknown(0) TCGA-EE-A2GR-06 3 164737500 164737500 G A SI Missense_Mutation p.R1105C 0.40 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GR-06 3 164766919 164766919 C T SI Missense_Mutation p.E571K 0.58 tolerated(0.56) benign(0.103) TCGA-EE-A2GR-06 3 164906440 164906440 G A SLITRK3 Missense_Mutation p.L727F 0.59 tolerated(0.15) benign(0.012) TCGA-EE-A2GR-06 3 167031835 167031835 G A ZBBX Silent p.F448F 0.22 TCGA-EE-A2GR-06 3 167039934 167039934 C T ZBBX Missense_Mutation p.M318I 0.46 deleterious(0.01) benign(0.386) TCGA-EE-A2GR-06 3 167277918 167277918 G A WDR49 Silent p.I195I 0.51 TCGA-EE-A2GR-06 3 167750415 167750415 G A GOLIM4 Missense_Mutation p.L357F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 168833510 168833510 G A MECOM Missense_Mutation p.S594L 0.58 tolerated(0.12) benign(0.207) TCGA-EE-A2GR-06 3 169540152 169540152 G A LRRIQ4 Missense_Mutation p.G148E 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 172607351 172607351 C T SPATA16 3'UTR 0.44 TCGA-EE-A2GR-06 3 172642058 172642058 C T SPATA16 Missense_Mutation p.M426I 0.29 tolerated(0.37) benign(0.043) TCGA-EE-A2GR-06 3 179051056 179051056 G A ZNF639 Splice_Site p.X102_splice 0.41 TCGA-EE-A2GR-06 3 179537748 179537748 C T PEX5L Nonsense_Mutation p.W280* 0.17 TCGA-EE-A2GR-06 3 183209743 183209743 C T KLHL6 Missense_Mutation p.R613K 0.31 tolerated_low_confidence(0.28) benign(0.005) TCGA-EE-A2GR-06 3 183887885 183887885 C T DVL3 Silent p.A530A 0.18 TCGA-EE-A2GR-06 3 183887886 183887886 C T DVL3 Missense_Mutation p.P531S 0.18 deleterious(0.02) possibly_damaging(0.876) TCGA-EE-A2GR-06 3 184045627 184045627 C T EIF4G1 Nonsense_Mutation p.Q1271* 0.51 TCGA-EE-A2GR-06 3 186299259 186299259 C T DNAJB11 Nonsense_Mutation p.Q186* 0.47 TCGA-EE-A2GR-06 3 186370277 186370277 G A FETUB Missense_Mutation p.G336R 0.49 deleterious(0.05) possibly_damaging(0.875) TCGA-EE-A2GR-06 3 189608623 189608623 G A TP63 Silent p.T566T 0.48 TCGA-EE-A2GR-06 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.57 TCGA-EE-A2GR-06 3 189691762 189691762 C T LEPREL1 Missense_Mutation p.G495E 0.38 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GR-06 3 189713165 189713165 C T LEPREL1 Missense_Mutation p.E183K 0.38 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GR-06 3 191098022 191098022 G A CCDC50 Missense_Mutation p.D351N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 192516251 192516251 C T MB21D2 Missense_Mutation p.G467E 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 193232645 193232645 G A ATP13A4 Missense_Mutation p.R26W 0.46 deleterious(0) probably_damaging(0.93) TCGA-EE-A2GR-06 3 194080774 194080774 G A LRRC15 Silent p.S339S 0.42 TCGA-EE-A2GR-06 3 194150496 194150496 G T ATP13A3 Missense_Mutation p.R929S 0.42 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 3 196236461 196236461 C T SMCO1 Missense_Mutation p.E44K 0.25 tolerated(0.05) possibly_damaging(0.491) TCGA-EE-A2GR-06 3 197598403 197598403 C T LRCH3 3'UTR 0.30 TCGA-EE-A2GR-06 3 197640645 197640645 G A IQCG Intron 0.30 TCGA-EE-A2GR-06 3 25665114 25665114 A C TOP2B Silent p.G868G 0.35 TCGA-EE-A2GR-06 3 25761670 25761670 G A NGLY1 Nonsense_Mutation p.R542* 0.51 TCGA-EE-A2GR-06 3 27157563 27157563 C T NEK10 Intron 0.23 TCGA-EE-A2GR-06 3 31658501 31658501 T A STT3B Missense_Mutation p.F353I 0.48 tolerated(0.08) benign(0.081) TCGA-EE-A2GR-06 3 36779057 36779057 C T DCLK3 Missense_Mutation p.G365E 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 36898642 36898642 C T TRANK1 Silent p.K813K 0.40 TCGA-EE-A2GR-06 3 37365667 37365667 C T GOLGA4 Missense_Mutation p.L786F 0.21 probably_damaging(0.962) TCGA-EE-A2GR-06 3 38163826 38163826 G A DLEC1 Missense_Mutation p.G1731S 0.54 tolerated(0.1) possibly_damaging(0.46) TCGA-EE-A2GR-06 3 38182680 38182680 C T MYD88 Missense_Mutation p.P286L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 38770293 38770293 G A SCN10A Silent p.L794L 0.26 TCGA-EE-A2GR-06 3 44951607 44951607 G A TGM4 Missense_Mutation p.M451I 0.20 deleterious(0.01) benign(0.297) TCGA-EE-A2GR-06 3 45812903 45812903 C T SLC6A20 Silent p.Q247Q 0.27 TCGA-EE-A2GR-06 3 46943282 46943282 C T PTH1R Silent p.I381I 0.41 TCGA-EE-A2GR-06 3 48336702 48336702 A G NME6 Missense_Mutation p.L94P 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 48465165 48465165 C A PLXNB1 Nonsense_Mutation p.E286* 0.36 TCGA-EE-A2GR-06 3 4854903 4854903 C T ITPR1 Missense_Mutation p.P2501S 0.47 tolerated(0.91) benign(0.002) TCGA-EE-A2GR-06 3 48607064 48607064 G A COL7A1 Silent p.I2525I 0.33 TCGA-EE-A2GR-06 3 49065158 49065158 G A IMPDH2 Silent p.D172D 0.51 TCGA-EE-A2GR-06 3 49699631 49699631 G A BSN Silent p.G3451G 0.54 TCGA-EE-A2GR-06 3 50232077 50232077 G A GNAT1 Silent p.P284P 0.43 TCGA-EE-A2GR-06 3 50232078 50232078 G A GNAT1 Missense_Mutation p.D285N 0.43 deleterious(0.04) benign(0.166) TCGA-EE-A2GR-06 3 50293694 50293694 C T GNAI2 Missense_Mutation p.R179C 0.31 deleterious(0.02) benign(0.041) TCGA-EE-A2GR-06 3 50329948 50329948 G A IFRD2 5'Flank 0.39 TCGA-EE-A2GR-06 3 52551110 52551110 G A STAB1 Missense_Mutation p.G1492R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 52551111 52551111 G A STAB1 Missense_Mutation p.G1492E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 53155743 53155743 C T RFT1 Nonsense_Mutation p.W177* 0.42 TCGA-EE-A2GR-06 3 53694254 53694254 C T CACNA1D Missense_Mutation p.R240C 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 3 53853615 53853615 G A CHDH Silent p.L403L 0.29 TCGA-EE-A2GR-06 3 54537588 54537588 G A CACNA2D3 Missense_Mutation p.E151K 0.52 deleterious(0.02) benign(0.336) TCGA-EE-A2GR-06 3 54914848 54914848 C T CACNA2D3 Missense_Mutation p.H624Y 0.21 tolerated(0.28) probably_damaging(0.985) TCGA-EE-A2GR-06 3 55504313 55504313 G A WNT5A Missense_Mutation p.S317L 0.55 deleterious(0) probably_damaging(0.97) TCGA-EE-A2GR-06 3 56026215 56026215 C T ERC2 Missense_Mutation p.D709N 0.45 deleterious(0) benign(0.313) TCGA-EE-A2GR-06 3 56330152 56330152 C T ERC2 Silent p.E323E 0.46 TCGA-EE-A2GR-06 3 56330423 56330423 C T ERC2 Missense_Mutation p.R233Q 0.24 tolerated(0.13) probably_damaging(0.937) TCGA-EE-A2GR-06 3 56651388 56651388 C T CCDC66 Missense_Mutation p.P698S 0.20 tolerated(0.95) benign(0.019) TCGA-EE-A2GR-06 3 57509311 57509311 C T DNAH12 Missense_Mutation p.G93E 0.15 tolerated(0.44) benign(0.052) TCGA-EE-A2GR-06 3 58135686 58135686 G A FLNB Silent p.G2098G 0.48 TCGA-EE-A2GR-06 3 58519210 58519210 C T ACOX2 Missense_Mutation p.S182N 0.18 deleterious(0) possibly_damaging(0.735) TCGA-EE-A2GR-06 3 58853583 58853583 C T C3orf67 Silent p.R240R 0.20 TCGA-EE-A2GR-06 3 64635377 64635377 A C ADAMTS9 Missense_Mutation p.L514R 0.39 tolerated(0.09) benign(0.288) TCGA-EE-A2GR-06 3 64635378 64635378 G A ADAMTS9 Missense_Mutation p.L514F 0.39 tolerated(0.11) benign(0.021) TCGA-EE-A2GR-06 3 65479288 65479288 C T MAGI1 Missense_Mutation p.R150K 0.47 tolerated(0.35) probably_damaging(0.953) TCGA-EE-A2GR-06 3 68782268 68782268 G A FAM19A4 3'UTR 0.37 TCGA-EE-A2GR-06 3 73432954 73432954 C T PDZRN3 Nonsense_Mutation p.W921* 0.30 TCGA-EE-A2GR-06 3 74383907 74383907 A C CNTN3 Silent p.S549S 0.47 TCGA-EE-A2GR-06 3 74535700 74535700 G A CNTN3 Missense_Mutation p.P89S 0.48 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A2GR-06 3 7620747 7620747 C T GRM7 Silent p.F718F 0.51 TCGA-EE-A2GR-06 3 77147229 77147229 C T ROBO2 Silent p.V58V 0.56 TCGA-EE-A2GR-06 3 77695243 77695243 C T ROBO2 3'UTR 0.34 TCGA-EE-A2GR-06 3 93611862 93611862 C T PROS1 Missense_Mutation p.G357E 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 3 9731824 9731824 C T MTMR14 Missense_Mutation p.P537L 0.26 tolerated(0.14) probably_damaging(0.991) TCGA-EE-A2GR-06 3 97852023 97852023 G A OR5H1 Missense_Mutation p.G161E 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A2GR-06 3 9804607 9804607 C T CAMK1 Silent p.R140R 0.18 TCGA-EE-A2GR-06 3 99513179 99513179 T A COL8A1 Missense_Mutation p.I145N 0.41 tolerated(0.53) unknown(0) TCGA-EE-A2GR-06 3 99886587 99886587 C T CMSS1 Missense_Mutation p.P141S 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 4 100239230 100239230 C T ADH1B Missense_Mutation p.G78R 0.44 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GR-06 4 100460382 100460382 C T C4orf17 Missense_Mutation p.H231Y 0.49 tolerated(0.18) benign(0.007) TCGA-EE-A2GR-06 4 100470161 100470161 A - TRMT10A 3'UTR 0.21 TCGA-EE-A2GR-06 4 103459047 103459047 C T NFKB1 Silent p.G64G 0.17 TCGA-EE-A2GR-06 4 106859556 106859556 C T NPNT Missense_Mutation p.P192S 0.39 deleterious(0.03) benign(0.222) TCGA-EE-A2GR-06 4 109680996 109680996 G A ETNPPL Nonsense_Mutation p.R82* 0.46 TCGA-EE-A2GR-06 4 110431225 110431225 G A SEC24B Silent p.K578K 0.35 TCGA-EE-A2GR-06 4 113346895 113346895 C T ALPK1 Silent p.L204L 0.26 TCGA-EE-A2GR-06 4 11400739 11400739 G A HS3ST1 Silent p.F297F 0.48 TCGA-EE-A2GR-06 4 120177660 120177660 T A USP53 Missense_Mutation p.I184N 0.51 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GR-06 4 121957664 121957664 T G NDNF Missense_Mutation p.N488H 0.44 tolerated(0.13) benign(0.01) TCGA-EE-A2GR-06 4 122722469 122722469 C T EXOSC9 5'Flank 0.17 TCGA-EE-A2GR-06 4 122854053 122854053 G A TRPC3 Silent p.A120A 0.25 TCGA-EE-A2GR-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.20 probably_damaging(0.999) TCGA-EE-A2GR-06 4 126239214 126239214 C T FAT4 Silent p.L550L 0.53 TCGA-EE-A2GR-06 4 126240916 126240916 C T FAT4 Missense_Mutation p.S1117L 0.52 probably_damaging(0.953) TCGA-EE-A2GR-06 4 126412549 126412549 G A FAT4 Missense_Mutation p.E4858K 0.42 benign(0.242) TCGA-EE-A2GR-06 4 128685486 128685486 G A SLC25A31 Missense_Mutation p.R150Q 0.57 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GR-06 4 134073511 134073511 G A PCDH10 Missense_Mutation p.R739H 0.27 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A2GR-06 4 138451346 138451346 G A PCDH18 Missense_Mutation p.P633S 0.43 tolerated(0.59) benign(0.05) TCGA-EE-A2GR-06 4 1389761 1389761 A G CRIPAK 3'UTR 0.75 TCGA-EE-A2GR-06 4 140375442 140375442 C T RAB33B Silent p.S31S 0.57 TCGA-EE-A2GR-06 4 145579946 145579946 C T HHIP Silent p.F159F 0.19 TCGA-EE-A2GR-06 4 148453712 148453712 A T EDNRA Silent p.V201V 0.23 TCGA-EE-A2GR-06 4 155507389 155507389 G A FGA Missense_Mutation p.P398S 0.37 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GR-06 4 156135355 156135355 C T NPY2R Silent p.F88F 0.27 TCGA-EE-A2GR-06 4 157732075 157732075 C T PDGFC Missense_Mutation p.G137R 0.52 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 4 162402298 162402298 C T FSTL5 Silent p.E494E 0.26 TCGA-EE-A2GR-06 4 164247564 164247564 C T NPY1R Missense_Mutation p.G48E 0.28 deleterious(0.01) benign(0.254) TCGA-EE-A2GR-06 4 165890828 165890828 C T TRIM61 Silent p.Q109Q 0.35 TCGA-EE-A2GR-06 4 166929148 166929148 G A TLL1 Missense_Mutation p.E289K 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2GR-06 4 169142907 169142907 G A DDX60 Silent p.S1650S 0.41 TCGA-EE-A2GR-06 4 169189085 169189085 C T DDX60 Missense_Mutation p.E946K 0.51 tolerated(0.08) benign(0.015) TCGA-EE-A2GR-06 4 170398377 170398377 C T NEK1 Missense_Mutation p.E778K 0.27 tolerated(0.09) benign(0.149) TCGA-EE-A2GR-06 4 178361493 178361493 G A AGA Missense_Mutation p.S72F 0.60 deleterious(0) possibly_damaging(0.866) TCGA-EE-A2GR-06 4 183601411 183601411 G A TENM3 Silent p.V516V 0.22 TCGA-EE-A2GR-06 4 184182240 184182240 C T WWC2 Silent p.F488F 0.44 TCGA-EE-A2GR-06 4 20619120 20619120 G A SLIT2 Missense_Mutation p.E1399K 0.55 tolerated(0.21) benign(0.021) TCGA-EE-A2GR-06 4 2178024 2178024 C T POLN Missense_Mutation p.R406K 0.50 tolerated(0.25) benign(0.003) TCGA-EE-A2GR-06 4 25379083 25379083 C T ANAPC4 Missense_Mutation p.R12W 0.18 deleterious(0) benign(0.347) TCGA-EE-A2GR-06 4 25836876 25836876 G A SEL1L3 Missense_Mutation p.P268L 0.43 tolerated(0.36) benign(0.001) TCGA-EE-A2GR-06 4 26484868 26484868 C T CCKAR Missense_Mutation p.G222R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 4 2877717 2877717 C T ADD1 Silent p.F25F 0.36 TCGA-EE-A2GR-06 4 2910299 2910299 T C ADD1 Missense_Mutation p.C556R 0.50 deleterious(0) possibly_damaging(0.568) TCGA-EE-A2GR-06 4 36214080 36214080 G A ARAP2 Silent p.T357T 0.16 TCGA-EE-A2GR-06 4 39104936 39104936 C T KLHL5 Missense_Mutation p.R490C 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GR-06 4 40337876 40337876 A C CHRNA9 Missense_Mutation p.K33Q 0.42 tolerated(0.17) benign(0.167) TCGA-EE-A2GR-06 4 42414996 42414996 G A ATP8A1 Silent p.I1144I 0.21 TCGA-EE-A2GR-06 4 437781 437781 G A ZNF721 Missense_Mutation p.H159Y 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A2GR-06 4 46252353 46252353 C T GABRA2 Missense_Mutation p.R443K 0.21 tolerated(0.45) benign(0.071) TCGA-EE-A2GR-06 4 47538910 47538910 C T ATP10D Nonsense_Mutation p.R451* 0.12 TCGA-EE-A2GR-06 4 47570864 47570864 G A ATP10D Missense_Mutation p.G955E 0.20 tolerated(1) benign(0.004) TCGA-EE-A2GR-06 4 47938653 47938653 G A CNGA1 Missense_Mutation p.P689S 0.18 tolerated(0.13) benign(0.126) TCGA-EE-A2GR-06 4 48088607 48088607 C T TXK Missense_Mutation p.G278R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 4 52861881 52861881 G A LRRC66 Missense_Mutation p.P436L 0.45 deleterious(0.01) benign(0.035) TCGA-EE-A2GR-06 4 54362234 54362234 C T LNX1 Missense_Mutation p.D436N 0.16 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 4 55564466 55564466 C T KIT Silent p.F118F 0.48 TCGA-EE-A2GR-06 4 55602768 55602768 C T KIT Silent p.F863F 0.55 TCGA-EE-A2GR-06 4 57215480 57215480 G A AASDH Nonsense_Mutation p.R813* 0.49 TCGA-EE-A2GR-06 4 5961053 5961053 C T C4orf50 3'UTR 0.23 TCGA-EE-A2GR-06 4 62897307 62897307 C T LPHN3 Silent p.F1122F 0.44 TCGA-EE-A2GR-06 4 6695775 6695775 A C S100P Missense_Mutation p.K39T 0.45 tolerated(0.32) possibly_damaging(0.478) TCGA-EE-A2GR-06 4 70066428 70066428 C T UGT2B11 Silent p.E440E 0.45 TCGA-EE-A2GR-06 4 70455075 70455075 C T UGT2A1 3'UTR 0.43 TCGA-EE-A2GR-06 4 70455305 70455305 G A UGT2A1 Nonsense_Mutation p.R623* 0.22 TCGA-EE-A2GR-06 4 70709918 70709918 C T SULT1E1 Missense_Mutation p.E245K 0.46 tolerated(0.47) benign(0.005) TCGA-EE-A2GR-06 4 71265005 71265005 G A PROL1 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.043) TCGA-EE-A2GR-06 4 71472178 71472178 G A AMBN Missense_Mutation p.D359N 0.50 tolerated(0.88) probably_damaging(0.976) TCGA-EE-A2GR-06 4 71507736 71507736 C T ENAM Missense_Mutation p.P198L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 4 77278649 77278649 C T CCDC158 Missense_Mutation p.R684Q 0.42 tolerated(1) probably_damaging(0.975) TCGA-EE-A2GR-06 4 77661858 77661858 G A SHROOM3 Silent p.G844G 0.31 TCGA-EE-A2GR-06 4 79297021 79297021 G A FRAS1 Missense_Mutation p.E1094K 0.44 benign(0.044) TCGA-EE-A2GR-06 4 80246882 80246882 C T NAA11 Silent p.G50G 0.19 TCGA-EE-A2GR-06 4 80246932 80246932 G A NAA11 Missense_Mutation p.H34Y 0.16 deleterious(0.01) possibly_damaging(0.817) TCGA-EE-A2GR-06 4 80327838 80327838 G T GK2 Missense_Mutation p.A506D 0.43 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 4 81966962 81966962 T A BMP3 Silent p.S129S 0.39 TCGA-EE-A2GR-06 4 82126026 82126026 G A PRKG2 Missense_Mutation p.S59L 0.54 tolerated(0.31) benign(0.021) TCGA-EE-A2GR-06 4 8214498 8214498 C T SH3TC1 Silent p.L106L 0.46 TCGA-EE-A2GR-06 4 82369428 82369428 C T RASGEF1B Missense_Mutation p.R150K 0.27 tolerated(0.48) benign(0.003) TCGA-EE-A2GR-06 4 85562031 85562031 C T CDS1 Missense_Mutation p.P307L 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 4 86643123 86643123 C T ARHGAP24 Missense_Mutation p.P89L 0.51 deleterious(0) benign(0.039) TCGA-EE-A2GR-06 4 87769914 87769914 C T SLC10A6 Missense_Mutation p.V119I 0.47 tolerated(0.07) probably_damaging(0.923) TCGA-EE-A2GR-06 4 88902819 88902819 C T SPP1 Missense_Mutation p.P137S 0.43 tolerated(0.06) probably_damaging(0.973) TCGA-EE-A2GR-06 4 90857467 90857467 C T MMRN1 Missense_Mutation p.S879L 0.40 deleterious(0.04) benign(0.037) TCGA-EE-A2GR-06 4 91230275 91230275 G A CCSER1 Missense_Mutation p.M280I 0.40 tolerated(0.1) benign(0.018) TCGA-EE-A2GR-06 4 94436523 94436523 G A GRID2 Silent p.S718S 0.51 TCGA-EE-A2GR-06 4 94436524 94436524 G A GRID2 Missense_Mutation p.E719K 0.51 tolerated(0.16) benign(0.087) TCGA-EE-A2GR-06 5 109120469 109120469 C T MAN2A1 Silent p.F534F 0.22 TCGA-EE-A2GR-06 5 11159866 11159866 G A CTNND2 Missense_Mutation p.L661F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 5 112174398 112174398 T G APC Missense_Mutation p.L1036W 0.35 probably_damaging(0.999) TCGA-EE-A2GR-06 5 112174399 112174399 G T APC Missense_Mutation p.L1036F 0.31 probably_damaging(0.999) TCGA-EE-A2GR-06 5 112769798 112769798 C G TSSK1B Missense_Mutation p.D247H 0.16 deleterious(0.02) possibly_damaging(0.752) TCGA-EE-A2GR-06 5 112868621 112868621 T G YTHDC2 Missense_Mutation p.C241G 0.61 deleterious(0) probably_damaging(0.947) TCGA-EE-A2GR-06 5 112874846 112874846 A - YTHDC2 Frame_Shift_Del p.M394Cfs*2 0.33 TCGA-EE-A2GR-06 5 115298969 115298969 G A AQPEP Missense_Mutation p.G219R 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 5 1221815 1221815 G A SLC6A19 Splice_Site p.X568_splice 0.31 TCGA-EE-A2GR-06 5 1221816 1221816 G A SLC6A19 Missense_Mutation p.E568K 0.31 tolerated(0.43) possibly_damaging(0.597) TCGA-EE-A2GR-06 5 1232978 1232978 C T SLC6A18 Silent p.S138S 0.11 TCGA-EE-A2GR-06 5 1244843 1244843 C T SLC6A18 Silent p.F539F 0.24 TCGA-EE-A2GR-06 5 1253879 1253879 C T TERT Silent p.P1121P 0.62 TCGA-EE-A2GR-06 5 127516636 127516636 C T SLC12A2 Silent p.I1054I 0.33 TCGA-EE-A2GR-06 5 127609652 127609652 C T FBN2 Missense_Mutation p.E2574K 0.40 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A2GR-06 5 127674737 127674737 C T FBN2 Silent p.R1120R 0.62 TCGA-EE-A2GR-06 5 128351666 128351666 G A SLC27A6 Missense_Mutation p.G353E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 5 134121252 134121252 C G DDX46 Nonsense_Mutation p.Y480* 0.61 TCGA-EE-A2GR-06 5 13752267 13752267 G A DNAH5 Silent p.F3668F 0.61 TCGA-EE-A2GR-06 5 137727375 137727375 C T KDM3B Missense_Mutation p.S685F 0.74 deleterious_low_confidence(0.01) benign(0.172) TCGA-EE-A2GR-06 5 13776665 13776665 G A DNAH5 Missense_Mutation p.L3086F 0.43 possibly_damaging(0.849) TCGA-EE-A2GR-06 5 13870977 13870977 G A DNAH5 Missense_Mutation p.R1245C 0.35 possibly_damaging(0.689) TCGA-EE-A2GR-06 5 139574046 139574046 C T CYSTM1 5'UTR 0.25 TCGA-EE-A2GR-06 5 139917122 139917122 C T ANKHD1 Silent p.V2392V 0.44 TCGA-EE-A2GR-06 5 139919016 139919016 T C ANKHD1 Intron 0.33 TCGA-EE-A2GR-06 5 140176468 140176468 C T PCDHA2 Missense_Mutation p.A640V 0.33 tolerated_low_confidence(0.08) benign(0.093) TCGA-EE-A2GR-06 5 140187042 140187042 C T PCDHA4 Silent p.I90I 0.28 TCGA-EE-A2GR-06 5 140202066 140202066 G A PCDHA5 Missense_Mutation p.D236N 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GR-06 5 140202820 140202820 C T PCDHA5 Missense_Mutation p.A487V 0.32 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EE-A2GR-06 5 140222527 140222527 G A PCDHA8 Missense_Mutation p.G541S 0.23 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-EE-A2GR-06 5 140307248 140307248 C T PCDHAC1 Silent p.A257A 0.38 TCGA-EE-A2GR-06 5 140432718 140432718 G A PCDHB1 Missense_Mutation p.D555N 0.30 tolerated(0.05) benign(0.005) TCGA-EE-A2GR-06 5 140517294 140517294 G A PCDHB5 Missense_Mutation p.A760T 0.32 tolerated_low_confidence(1) benign(0) TCGA-EE-A2GR-06 5 140562967 140562967 C T PCDHB16 Missense_Mutation p.S278L 0.19 tolerated_low_confidence(0.11) benign(0.03) TCGA-EE-A2GR-06 5 140564550 140564550 C T PCDHB16 3'UTR 0.40 TCGA-EE-A2GR-06 5 140581615 140581615 G A PCDHB11 Silent p.T756T 0.58 TCGA-EE-A2GR-06 5 140626282 140626282 G A PCDHB15 Missense_Mutation p.G379E 0.34 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-EE-A2GR-06 5 140711422 140711422 C T PCDHGA1 Missense_Mutation p.P391S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A2GR-06 5 140711932 140711932 G A PCDHGA1 Missense_Mutation p.E561K 0.70 deleterious_low_confidence(0.03) possibly_damaging(0.771) TCGA-EE-A2GR-06 5 140723892 140723892 C T PCDHGA3 Nonsense_Mutation p.Q98* 0.62 TCGA-EE-A2GR-06 5 140744287 140744287 C T PCDHGA5 Silent p.F130F 0.31 TCGA-EE-A2GR-06 5 140772878 140772878 C T PCDHGA8 Silent p.S166S 0.36 TCGA-EE-A2GR-06 5 141243292 141243292 G A PCDH1 Silent p.I868I 0.25 TCGA-EE-A2GR-06 5 144942 144942 G A PLEKHG4B Silent p.R248R 0.67 TCGA-EE-A2GR-06 5 1463735 1463735 G A LPCAT1 3'UTR 0.67 TCGA-EE-A2GR-06 5 147499859 147499859 G A SPINK5 Missense_Mutation p.E815K 0.69 deleterious(0.04) possibly_damaging(0.767) TCGA-EE-A2GR-06 5 149581965 149581965 G A SLC6A7 Missense_Mutation p.G305E 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 5 153149817 153149817 G A GRIA1 Missense_Mutation p.M714I 0.59 tolerated(0.57) benign(0.042) TCGA-EE-A2GR-06 5 156589596 156589596 G A FAM71B Silent p.I560I 0.32 TCGA-EE-A2GR-06 5 156589651 156589651 C T FAM71B Missense_Mutation p.R542K 0.32 tolerated(0.46) benign(0.007) TCGA-EE-A2GR-06 5 158588570 158588570 C G RNF145 Missense_Mutation p.V474L 0.74 tolerated(0.9) benign(0.102) TCGA-EE-A2GR-06 5 158588571 158588571 T G RNF145 Silent p.P473P 0.70 TCGA-EE-A2GR-06 5 160761766 160761766 C T GABRB2 Silent p.V275V 0.59 TCGA-EE-A2GR-06 5 16451855 16451855 G A ZNF622 Nonsense_Mutation p.Q449* 0.52 TCGA-EE-A2GR-06 5 167687292 167687292 G A TENM2 Silent p.V2479V 0.65 TCGA-EE-A2GR-06 5 168096985 168096985 C T SLIT3 Missense_Mutation p.G1380E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 5 168222552 168222552 G A SLIT3 Missense_Mutation p.P323S 0.25 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2GR-06 5 169141077 169141077 C T DOCK2 Missense_Mutation p.P569S 0.24 deleterious(0.01) possibly_damaging(0.86) TCGA-EE-A2GR-06 5 171510058 171510058 G A STK10 Silent p.L572L 0.31 TCGA-EE-A2GR-06 5 171638903 171638903 G A UBTD2 Silent p.I212I 0.36 TCGA-EE-A2GR-06 5 171638904 171638904 A T UBTD2 Missense_Mutation p.I212N 0.35 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GR-06 5 174868954 174868954 C T DRD1 Silent p.K383K 0.64 TCGA-EE-A2GR-06 5 175774788 175774788 G A KIAA1191 Nonsense_Mutation p.R245* 0.68 TCGA-EE-A2GR-06 5 176011610 176011610 G A CDHR2 Silent p.L776L 0.62 TCGA-EE-A2GR-06 5 178418980 178418980 G A GRM6 Silent p.A203A 0.65 TCGA-EE-A2GR-06 5 178418981 178418981 G A GRM6 Missense_Mutation p.A203V 0.65 deleterious(0) probably_damaging(0.951) TCGA-EE-A2GR-06 5 178419001 178419001 G A GRM6 Silent p.P196P 0.30 TCGA-EE-A2GR-06 5 179306098 179306098 G A TBC1D9B Silent p.L506L 0.46 TCGA-EE-A2GR-06 5 180030269 180030269 C T FLT4 Missense_Mutation p.E1339K 0.67 tolerated_low_confidence(0.06) benign(0.011) TCGA-EE-A2GR-06 5 180055994 180055994 G A FLT4 Missense_Mutation p.P331S 0.17 deleterious(0) benign(0.244) TCGA-EE-A2GR-06 5 180374603 180374603 G A BTNL8 Silent p.K255K 0.30 TCGA-EE-A2GR-06 5 19483414 19483414 G A CDH18 Silent p.L626L 0.58 TCGA-EE-A2GR-06 5 21842363 21842363 C T CDH12 Missense_Mutation p.D241N 0.58 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 5 21842364 21842364 C T CDH12 Silent p.K240K 0.60 TCGA-EE-A2GR-06 5 32089224 32089224 C T PDZD2 Silent p.L1890L 0.65 TCGA-EE-A2GR-06 5 35954269 35954269 G A UGT3A1 3'UTR 0.47 TCGA-EE-A2GR-06 5 35965926 35965926 C T UGT3A1 Silent p.K135K 0.35 TCGA-EE-A2GR-06 5 35991306 35991306 G A UGT3A1 Missense_Mutation p.L13F 0.25 tolerated(0.3) benign(0.009) TCGA-EE-A2GR-06 5 36038066 36038066 C T UGT3A2 Missense_Mutation p.M376I 0.52 deleterious(0.04) benign(0.168) TCGA-EE-A2GR-06 5 37165645 37165645 G A C5orf42 Missense_Mutation p.P2510L 0.23 tolerated(0.05) benign(0.013) TCGA-EE-A2GR-06 5 38504110 38504110 C T LIFR Missense_Mutation p.E469K 0.22 tolerated(0.14) benign(0.038) TCGA-EE-A2GR-06 5 38506053 38506053 C T LIFR Silent p.P415P 0.21 TCGA-EE-A2GR-06 5 38923310 38923310 G A OSMR Silent p.R608R 0.45 TCGA-EE-A2GR-06 5 40955534 40955534 G A C7 Missense_Mutation p.G380E 0.58 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 5 41000803 41000803 C T MROH2B Missense_Mutation p.D1443N 0.21 deleterious(0.01) possibly_damaging(0.608) TCGA-EE-A2GR-06 5 42801055 42801055 G A SEPP1 Nonsense_Mutation p.R305* 0.60 TCGA-EE-A2GR-06 5 52379209 52379209 T C ITGA2 Silent p.L1062L 0.52 TCGA-EE-A2GR-06 5 54405901 54405901 C T GZMA Missense_Mutation p.S227F 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 5 57753146 57753146 C T PLK2 Silent p.R290R 0.35 TCGA-EE-A2GR-06 5 57753147 57753147 C T PLK2 Missense_Mutation p.R290K 0.33 tolerated(0.21) benign(0.009) TCGA-EE-A2GR-06 5 60369005 60369005 G A NDUFAF2 Missense_Mutation p.D61N 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2GR-06 5 63256820 63256820 C T HTR1A Missense_Mutation p.G243R 0.55 tolerated(0.42) possibly_damaging(0.451) TCGA-EE-A2GR-06 5 63890584 63890584 G A RGS7BP Missense_Mutation p.E171K 0.62 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GR-06 5 64466461 64466461 G A ADAMTS6 Missense_Mutation p.P1076L 0.43 deleterious(0.03) benign(0.133) TCGA-EE-A2GR-06 5 65084139 65084139 C T NLN Missense_Mutation p.P385S 0.30 deleterious(0.04) probably_damaging(0.97) TCGA-EE-A2GR-06 5 677879 677879 G A TPPP Silent p.V99V 0.55 TCGA-EE-A2GR-06 5 68682007 68682007 G A RAD17 Silent p.R244R 0.28 TCGA-EE-A2GR-06 5 70820117 70820117 T G BDP1 Silent p.P1913P 0.35 TCGA-EE-A2GR-06 5 74078872 74078872 C T FAM169A Missense_Mutation p.E450K 0.18 deleterious(0) possibly_damaging(0.86) TCGA-EE-A2GR-06 5 74078955 74078955 G A FAM169A Missense_Mutation p.S422F 0.70 deleterious(0.01) possibly_damaging(0.554) TCGA-EE-A2GR-06 5 76342421 76342421 A G AGGF1 Missense_Mutation p.T374A 0.65 deleterious(0) possibly_damaging(0.725) TCGA-EE-A2GR-06 5 76707948 76707948 C T PDE8B Missense_Mutation p.L534F 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2GR-06 5 78329201 78329201 C T DMGDH Silent p.G408G 0.37 TCGA-EE-A2GR-06 5 78379596 78379596 G A BHMT2 Silent p.R309R 0.20 TCGA-EE-A2GR-06 5 79029225 79029225 C T CMYA5 Missense_Mutation p.S1546L 0.40 benign(0.001) TCGA-EE-A2GR-06 5 79034203 79034203 G A CMYA5 Silent p.K3205K 0.27 TCGA-EE-A2GR-06 5 79855807 79855807 C T ANKRD34B Missense_Mutation p.G11E 0.65 deleterious(0) benign(0.128) TCGA-EE-A2GR-06 5 80363978 80363978 A G RASGRF2 Missense_Mutation p.I175V 0.33 tolerated(0.13) probably_damaging(0.992) TCGA-EE-A2GR-06 5 80476039 80476039 G A RASGRF2 Missense_Mutation p.R911Q 0.64 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A2GR-06 5 80521609 80521609 A G RASGRF2 3'UTR 0.33 TCGA-EE-A2GR-06 5 83239218 83239218 T C EDIL3 3'UTR 0.54 TCGA-EE-A2GR-06 5 83360633 83360633 G A EDIL3 Missense_Mutation p.P280S 0.27 tolerated(0.13) probably_damaging(0.97) TCGA-EE-A2GR-06 5 889776 889776 G A BRD9 Intron 0.35 TCGA-EE-A2GR-06 5 89943465 89943465 G A GPR98 Missense_Mutation p.G1058E 0.65 probably_damaging(0.993) TCGA-EE-A2GR-06 5 89948162 89948162 G A GPR98 Splice_Site p.X1139_splice 0.29 TCGA-EE-A2GR-06 5 90055296 90055296 C T GPR98 Missense_Mutation p.S4004F 0.26 probably_damaging(0.99) TCGA-EE-A2GR-06 5 94248651 94248651 G A MCTP1 Silent p.L461L 0.71 TCGA-EE-A2GR-06 6 102247659 102247659 T - GRIK2 Frame_Shift_Del p.E365Rfs*11 0.20 TCGA-EE-A2GR-06 6 105198315 105198315 T C HACE1 Silent p.R748R 0.56 TCGA-EE-A2GR-06 6 107003731 107003731 C T AIM1 Missense_Mutation p.P1484S 0.48 tolerated(0.47) benign(0.345) TCGA-EE-A2GR-06 6 107096972 107096972 G A QRSL1 Silent p.K151K 0.46 TCGA-EE-A2GR-06 6 108502808 108502808 C T NR2E1 Silent p.A316A 0.48 TCGA-EE-A2GR-06 6 108676932 108676932 C T LACE1 Missense_Mutation p.H164Y 0.22 deleterious(0) probably_damaging(0.927) TCGA-EE-A2GR-06 6 110146339 110146339 C T FIG4 Silent p.P865P 0.58 TCGA-EE-A2GR-06 6 112671372 112671372 G A RFPL4B Silent p.E154E 0.60 TCGA-EE-A2GR-06 6 116905895 116905895 C T RWDD1 Nonsense_Mutation p.Q49* 0.38 TCGA-EE-A2GR-06 6 117121776 117121776 C T GPRC6A Missense_Mutation p.E507K 0.43 tolerated(0.18) benign(0.008) TCGA-EE-A2GR-06 6 117150069 117150069 G A GPRC6A Silent p.I36I 0.52 TCGA-EE-A2GR-06 6 117589584 117589584 G A VGLL2 Silent p.L107L 0.48 TCGA-EE-A2GR-06 6 117686268 117686268 C T ROS1 Missense_Mutation p.G1025R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 125139535 125139535 G A NKAIN2 Missense_Mutation p.D180N 0.19 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2GR-06 6 125397890 125397890 C T RNF217 Missense_Mutation p.R165C 0.47 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GR-06 6 128306883 128306883 G A PTPRK Silent p.P1084P 0.27 TCGA-EE-A2GR-06 6 128403649 128403649 G A PTPRK Silent p.F570F 0.46 TCGA-EE-A2GR-06 6 130761718 130761718 G T TMEM200A Missense_Mutation p.V51F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 6 132859486 132859486 G A TAAR9 Missense_Mutation p.E20K 0.47 deleterious(0.02) benign(0) TCGA-EE-A2GR-06 6 132874774 132874774 C T TAAR8 Missense_Mutation p.P315S 0.44 tolerated(0.06) benign(0.391) TCGA-EE-A2GR-06 6 132909851 132909851 G A TAAR5 Silent p.F325F 0.59 TCGA-EE-A2GR-06 6 133789847 133789847 C T EYA4 Silent p.L316L 0.49 TCGA-EE-A2GR-06 6 13612093 13612093 C T SIRT5 Missense_Mutation p.S310F 0.25 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-EE-A2GR-06 6 136599501 136599501 G A BCLAF1 Missense_Mutation p.P173L 0.24 tolerated_low_confidence(0.48) possibly_damaging(0.851) TCGA-EE-A2GR-06 6 136667165 136667165 C T MAP7 Missense_Mutation p.E712K 0.19 deleterious(0.03) unknown(0) TCGA-EE-A2GR-06 6 138634995 138634995 T C KIAA1244 Silent p.L1422L 0.14 TCGA-EE-A2GR-06 6 138645205 138645205 G A KIAA1244 Missense_Mutation p.E1639K 0.34 deleterious(0.02) benign(0.002) TCGA-EE-A2GR-06 6 139609965 139609965 T C TXLNB Silent p.L24L 0.47 TCGA-EE-A2GR-06 6 144747581 144747581 C T UTRN Silent p.V188V 0.55 TCGA-EE-A2GR-06 6 146121323 146121323 G T FBXO30 Silent p.I719I 0.47 TCGA-EE-A2GR-06 6 147124461 147124461 G A ADGB Intron 0.46 TCGA-EE-A2GR-06 6 148792633 148792633 T G SASH1 Missense_Mutation p.S170A 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A2GR-06 6 148792634 148792634 C T SASH1 Missense_Mutation p.S170L 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2GR-06 6 149699616 149699616 C T TAB2 Missense_Mutation p.R189C 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 6 149901049 149901049 C T GINM1 Missense_Mutation p.P170L 0.50 deleterious(0.03) benign(0.323) TCGA-EE-A2GR-06 6 150164116 150164116 C T LRP11 Intron 0.54 TCGA-EE-A2GR-06 6 151859312 151859312 G A CCDC170 Missense_Mutation p.E107K 0.55 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A2GR-06 6 152647157 152647157 G A SYNE1 Missense_Mutation p.S5125F 0.38 probably_damaging(0.981) TCGA-EE-A2GR-06 6 152823773 152823773 C T SYNE1 Missense_Mutation p.D295N 0.40 benign(0) TCGA-EE-A2GR-06 6 157528639 157528639 C T ARID1B Missense_Mutation p.R2122C 0.40 probably_damaging(0.997) TCGA-EE-A2GR-06 6 157963677 157963677 C T ZDHHC14 Silent p.F102F 0.26 TCGA-EE-A2GR-06 6 160229840 160229840 G A PNLDC1 Missense_Mutation p.D200N 0.50 deleterious(0.03) possibly_damaging(0.744) TCGA-EE-A2GR-06 6 160328698 160328698 C T MAS1 Silent p.F237F 0.48 TCGA-EE-A2GR-06 6 161469282 161469282 C T MAP3K4 Intron 0.22 TCGA-EE-A2GR-06 6 161969965 161969965 G A PARK2 Missense_Mutation p.P335L 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 6 168927051 168927051 G A SMOC2 Silent p.R94R 0.43 TCGA-EE-A2GR-06 6 170155474 170155474 G T ERMARD Nonsense_Mutation p.E91* 0.20 TCGA-EE-A2GR-06 6 170628184 170628184 C T FAM120B Missense_Mutation p.T569I 0.34 tolerated(0.09) possibly_damaging(0.848) TCGA-EE-A2GR-06 6 25670232 25670232 C T SCGN Silent p.F133F 0.19 TCGA-EE-A2GR-06 6 25689431 25689431 C T SCGN Nonsense_Mutation p.Q187* 0.13 TCGA-EE-A2GR-06 6 25799087 25799087 G A SLC17A1 Silent p.L444L 0.58 TCGA-EE-A2GR-06 6 25813131 25813131 G A SLC17A1 Silent p.F275F 0.62 TCGA-EE-A2GR-06 6 25830821 25830821 T C SLC17A1 5'UTR 0.21 TCGA-EE-A2GR-06 6 26184054 26184054 C T HIST1H2BE Missense_Mutation p.P11S 0.22 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A2GR-06 6 26197375 26197375 C T HIST1H3D Missense_Mutation p.G35D 0.26 deleterious_low_confidence(0.01) benign(0.001) TCGA-EE-A2GR-06 6 26197376 26197376 C T HIST1H3D Missense_Mutation p.G35S 0.27 deleterious_low_confidence(0.01) benign(0.028) TCGA-EE-A2GR-06 6 2624171 2624171 G A C6orf195 5'UTR 0.33 TCGA-EE-A2GR-06 6 26373501 26373501 C T BTN3A2 Intron 0.56 TCGA-EE-A2GR-06 6 26509300 26509300 G A BTN1A1 Silent p.K493K 0.55 TCGA-EE-A2GR-06 6 27368374 27368374 G A ZNF391 Silent p.Q75Q 0.47 TCGA-EE-A2GR-06 6 27858434 27858434 G A HIST1H3J Missense_Mutation p.T46I 0.15 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-EE-A2GR-06 6 28194891 28194891 C T ZSCAN9 Missense_Mutation p.S10F 0.15 tolerated(0.09) benign(0.005) TCGA-EE-A2GR-06 6 28554089 28554089 C T SCAND3 Missense_Mutation p.E136K 0.16 deleterious_low_confidence(0) benign(0.102) TCGA-EE-A2GR-06 6 29640526 29640526 G A ZFP57 Silent p.G454G 0.22 TCGA-EE-A2GR-06 6 30525943 30525943 G T PRR3 Silent p.L41L 0.15 TCGA-EE-A2GR-06 6 3137651 3137651 C T BPHL Silent p.L196L 0.37 TCGA-EE-A2GR-06 6 31595634 31595634 C T PRRC2A Silent p.S461S 0.68 TCGA-EE-A2GR-06 6 31675732 31675732 C T LY6G6F Missense_Mutation p.S156F 0.24 tolerated(0.05) possibly_damaging(0.831) TCGA-EE-A2GR-06 6 32006524 32006524 G A CYP21A2 Silent p.R76R 0.41 TCGA-EE-A2GR-06 6 32012804 32012804 G A TNXB Missense_Mutation p.L65F 0.25 deleterious(0) possibly_damaging(0.875) TCGA-EE-A2GR-06 6 32037466 32037466 G A TNXB Silent p.P1817P 0.19 TCGA-EE-A2GR-06 6 32083638 32083638 G A ATF6B Missense_Mutation p.P664S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GR-06 6 32809442 32809442 C T PSMB8 Missense_Mutation p.G203E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 33169579 33169579 C T SLC39A7 Missense_Mutation p.P157S 0.48 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GR-06 6 33244018 33244018 C T RPS18 Silent p.A119A 0.56 TCGA-EE-A2GR-06 6 34949512 34949512 C T ANKS1A Missense_Mutation p.H161Y 0.65 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2GR-06 6 35960329 35960329 C T SLC26A8 Silent p.G250G 0.52 TCGA-EE-A2GR-06 6 36449397 36449397 C T KCTD20 Silent p.L239L 0.54 TCGA-EE-A2GR-06 6 36982748 36982748 C T FGD2 Silent p.L321L 0.16 TCGA-EE-A2GR-06 6 37140845 37140845 C T PIM1 Silent p.S227S 0.25 TCGA-EE-A2GR-06 6 37342423 37342423 C T RNF8 Missense_Mutation p.R356C 0.27 deleterious(0.03) benign(0.091) TCGA-EE-A2GR-06 6 38831663 38831663 G A DNAH8 Missense_Mutation p.G1892S 0.61 probably_damaging(1) TCGA-EE-A2GR-06 6 38906668 38906668 G A DNAH8 Missense_Mutation p.E3754K 0.25 benign(0.334) TCGA-EE-A2GR-06 6 39034053 39034053 C T GLP1R Silent p.I161I 0.36 TCGA-EE-A2GR-06 6 39196866 39196866 G A KCNK5 Missense_Mutation p.L8F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 6 41704508 41704508 C T PGC 3'UTR 0.31 TCGA-EE-A2GR-06 6 42797154 42797154 G A GLTSCR1L Silent p.V361V 0.19 TCGA-EE-A2GR-06 6 43014643 43014643 G A CUL7 Missense_Mutation p.T875I 0.39 deleterious(0) probably_damaging(0.962) TCGA-EE-A2GR-06 6 43251542 43251542 G A TTBK1 Missense_Mutation p.D1022N 0.13 benign(0.003) TCGA-EE-A2GR-06 6 43410735 43410735 C T ABCC10 Missense_Mutation p.P752S 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GR-06 6 43578327 43578327 C T POLH Missense_Mutation p.R371C 0.11 deleterious(0) probably_damaging(0.955) TCGA-EE-A2GR-06 6 44145010 44145010 C T CAPN11 Silent p.I423I 0.60 TCGA-EE-A2GR-06 6 46190989 46190989 G A RCAN2 Silent p.V207V 0.26 TCGA-EE-A2GR-06 6 46826784 46826784 C T GPR116 Silent p.T952T 0.52 TCGA-EE-A2GR-06 6 47576971 47576971 C T CD2AP Missense_Mutation p.S582F 0.47 tolerated(0.06) benign(0.002) TCGA-EE-A2GR-06 6 47682098 47682098 G A GPR115 Missense_Mutation p.E373K 0.52 tolerated(0.85) benign(0.002) TCGA-EE-A2GR-06 6 49754853 49754853 C T PGK2 Silent p.G16G 0.44 TCGA-EE-A2GR-06 6 52009185 52009185 G A MIR206 RNA 0.30 TCGA-EE-A2GR-06 6 54173453 54173453 C T TINAG Silent p.F35F 0.51 TCGA-EE-A2GR-06 6 54219385 54219385 G A TINAG Missense_Mutation p.E401K 0.51 tolerated(1) benign(0.006) TCGA-EE-A2GR-06 6 55113587 55113587 C T HCRTR2 Missense_Mutation p.S125F 0.14 tolerated(0.13) benign(0.016) TCGA-EE-A2GR-06 6 55113588 55113588 C T HCRTR2 Silent p.S125S 0.14 TCGA-EE-A2GR-06 6 55196546 55196546 C T GFRAL Missense_Mutation p.S19F 0.51 tolerated(0.08) benign(0.062) TCGA-EE-A2GR-06 6 55198660 55198660 C T GFRAL Silent p.F78F 0.46 TCGA-EE-A2GR-06 6 55266718 55266718 C T GFRAL 3'UTR 0.71 TCGA-EE-A2GR-06 6 55942371 55942371 C T COL21A1 Missense_Mutation p.G605R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 56029246 56029246 C T COL21A1 Missense_Mutation p.G449E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 56044684 56044684 C T COL21A1 Missense_Mutation p.G111E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 56044748 56044748 G A COL21A1 Missense_Mutation p.P90S 0.59 tolerated(0.05) probably_damaging(0.98) TCGA-EE-A2GR-06 6 56507426 56507426 C T DST Missense_Mutation p.G54E 0.36 benign(0.147) TCGA-EE-A2GR-06 6 70964882 70964882 G A COL9A1 Missense_Mutation p.P528S 0.20 possibly_damaging(0.472) TCGA-EE-A2GR-06 6 73951846 73951846 C T KHDC1 Missense_Mutation p.R149K 0.38 tolerated(0.75) benign(0.008) TCGA-EE-A2GR-06 6 75890910 75890910 C T COL12A1 Missense_Mutation p.D637N 0.16 benign(0.009) TCGA-EE-A2GR-06 6 76022779 76022779 C T FILIP1 Silent p.A923A 0.39 TCGA-EE-A2GR-06 6 87970462 87970462 A G ZNF292 Missense_Mutation p.N2372S 0.20 tolerated(0.31) possibly_damaging(0.472) TCGA-EE-A2GR-06 6 89790784 89790784 C T PNRC1 Silent p.L57L 0.52 TCGA-EE-A2GR-06 6 89790785 89790785 C T PNRC1 Missense_Mutation p.P58S 0.52 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A2GR-06 6 90468022 90468022 G A MDN1 Missense_Mutation p.P885L 0.09 probably_damaging(1) TCGA-EE-A2GR-06 6 96053773 96053773 C T MANEA Missense_Mutation p.P294L 0.23 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A2GR-06 6 96651444 96651444 C T FUT9 Missense_Mutation p.S138L 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 6 97053856 97053856 G A FHL5 Missense_Mutation p.G138E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 6 99894322 99894322 G A USP45 Silent p.D442D 0.53 TCGA-EE-A2GR-06 7 100180065 100180065 A C LRCH4 Missense_Mutation p.F80V 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GR-06 7 100184216 100184216 C T FBXO24 5'Flank 0.48 TCGA-EE-A2GR-06 7 100225227 100225227 G A TFR2 Silent p.V580V 0.33 TCGA-EE-A2GR-06 7 100458768 100458768 C T SLC12A9 Silent p.L409L 0.49 TCGA-EE-A2GR-06 7 100458769 100458769 C T SLC12A9 Silent p.L410L 0.49 TCGA-EE-A2GR-06 7 100552928 100552928 C T MUC3A Missense_Mutation p.L525F 0.20 tolerated(0.42) benign(0.323) TCGA-EE-A2GR-06 7 100682048 100682048 C T MUC17 Missense_Mutation p.P2451S 0.25 probably_damaging(0.963) TCGA-EE-A2GR-06 7 100682585 100682585 G A MUC17 Missense_Mutation p.E2630K 0.45 benign(0.186) TCGA-EE-A2GR-06 7 100683924 100683924 C T MUC17 Missense_Mutation p.P3076L 0.47 possibly_damaging(0.728) TCGA-EE-A2GR-06 7 100684576 100684576 G A MUC17 Silent p.V3293V 0.46 TCGA-EE-A2GR-06 7 100686845 100686845 G A MUC17 Missense_Mutation p.E4050K 0.48 benign(0.001) TCGA-EE-A2GR-06 7 102584759 102584759 T G LRRC17 Missense_Mutation p.L344R 0.40 tolerated(0.62) benign(0.014) TCGA-EE-A2GR-06 7 106836326 106836326 G A HBP1 Missense_Mutation p.S372N 0.45 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GR-06 7 106964934 106964934 C T COG5 Nonsense_Mutation p.W384* 0.50 TCGA-EE-A2GR-06 7 108524607 108524607 G A C7orf66 5'UTR 0.46 TCGA-EE-A2GR-06 7 111430618 111430618 G A DOCK4 Silent p.F1070F 0.32 TCGA-EE-A2GR-06 7 113518560 113518560 C T PPP1R3A Missense_Mutation p.D863N 0.23 tolerated(0.1) benign(0.048) TCGA-EE-A2GR-06 7 11446670 11446670 C T THSD7A Missense_Mutation p.R1310Q 0.20 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GR-06 7 116199329 116199329 G A CAV1 Silent p.Q175Q 0.46 TCGA-EE-A2GR-06 7 117174389 117174389 C T CFTR Silent p.L183L 0.38 TCGA-EE-A2GR-06 7 117174390 117174390 C T CFTR Missense_Mutation p.L184F 0.39 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A2GR-06 7 117450995 117450995 G A CTTNBP2 Silent p.L80L 0.41 TCGA-EE-A2GR-06 7 117450996 117450996 A G CTTNBP2 Silent p.N79N 0.42 TCGA-EE-A2GR-06 7 120381675 120381675 C T KCND2 Nonsense_Mutation p.Q456* 0.53 TCGA-EE-A2GR-06 7 122377021 122377021 C T CADPS2 Silent p.R147R 0.42 TCGA-EE-A2GR-06 7 126882983 126882983 G A GRM8 Silent p.L92L 0.67 TCGA-EE-A2GR-06 7 127014581 127014581 G A ZNF800 Missense_Mutation p.P270L 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2GR-06 7 128481303 128481303 G A FLNC Nonsense_Mutation p.W631* 0.51 TCGA-EE-A2GR-06 7 128494221 128494221 G A FLNC Silent p.L2226L 0.50 TCGA-EE-A2GR-06 7 130353588 130353588 G A TSGA13 3'UTR 0.30 TCGA-EE-A2GR-06 7 130353651 130353651 C T TSGA13 3'UTR 0.50 TCGA-EE-A2GR-06 7 130357685 130357685 T C TSGA13 Missense_Mutation p.N140S 0.48 tolerated(0.21) benign(0.001) TCGA-EE-A2GR-06 7 131815208 131815208 C T PLXNA4 3'UTR 0.20 TCGA-EE-A2GR-06 7 131864564 131864564 G A PLXNA4 Silent p.F1252F 0.53 TCGA-EE-A2GR-06 7 132192468 132192468 G A PLXNA4 Missense_Mutation p.H329Y 0.44 deleterious(0.01) benign(0.015) TCGA-EE-A2GR-06 7 133602416 133602416 C T EXOC4 Missense_Mutation p.S651F 0.44 deleterious(0) possibly_damaging(0.689) TCGA-EE-A2GR-06 7 138269649 138269649 C T TRIM24 Missense_Mutation p.R1036W 0.61 deleterious(0) benign(0.115) TCGA-EE-A2GR-06 7 141420792 141420792 G A WEE2 Silent p.V272V 0.50 TCGA-EE-A2GR-06 7 141635724 141635724 G A CLEC5A Nonsense_Mutation p.Q79* 0.27 TCGA-EE-A2GR-06 7 141672638 141672638 C A TAS2R38 Silent p.G284G 0.37 TCGA-EE-A2GR-06 7 141673541 141673541 C T TAS2R38 5'UTR 0.46 TCGA-EE-A2GR-06 7 142640048 142640048 G A KEL Missense_Mutation p.P619S 0.47 tolerated(0.8) benign(0.015) TCGA-EE-A2GR-06 7 143043244 143043244 C T CLCN1 Silent p.S728S 0.20 TCGA-EE-A2GR-06 7 143049070 143049070 G A CLCN1 3'UTR 0.41 TCGA-EE-A2GR-06 7 143657855 143657855 C T OR2F1 Silent p.S264S 0.20 TCGA-EE-A2GR-06 7 143657918 143657918 G A OR2F1 Silent p.L285L 0.39 TCGA-EE-A2GR-06 7 143657927 143657927 G A OR2F1 Missense_Mutation p.M288I 0.38 tolerated(0.27) benign(0.04) TCGA-EE-A2GR-06 7 143771481 143771481 C T OR2A25 Missense_Mutation p.P57S 0.60 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 7 144098962 144098962 C T NOBOX Missense_Mutation p.G98S 0.62 tolerated_low_confidence(0.1) benign(0.222) TCGA-EE-A2GR-06 7 148080748 148080748 G A CNTNAP2 Silent p.G1161G 0.45 TCGA-EE-A2GR-06 7 1484476 1484476 G A MICALL2 Silent p.A410A 0.33 TCGA-EE-A2GR-06 7 148486871 148486871 G A CUL1 Missense_Mutation p.G543R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 7 148951059 148951059 G A ZNF212 Silent p.E347E 0.54 TCGA-EE-A2GR-06 7 149558499 149558499 C T ZNF862 Silent p.I750I 0.42 TCGA-EE-A2GR-06 7 149558500 149558500 C T ZNF862 Missense_Mutation p.R751C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 7 150069034 150069034 C T REPIN1 Missense_Mutation p.P292L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 7 150069035 150069035 C T REPIN1 Silent p.P292P 0.32 TCGA-EE-A2GR-06 7 150269849 150269849 G A GIMAP4 Missense_Mutation p.E231K 0.41 tolerated(0.48) benign(0.038) TCGA-EE-A2GR-06 7 150417449 150417449 C T GIMAP1 Silent p.T119T 0.47 TCGA-EE-A2GR-06 7 150439922 150439922 G A GIMAP5 Missense_Mutation p.R232K 0.41 tolerated(0.2) benign(0.022) TCGA-EE-A2GR-06 7 150720529 150720529 C T ATG9B Intron 0.25 TCGA-EE-A2GR-06 7 150778633 150778633 G A TMUB1 3'UTR 0.50 TCGA-EE-A2GR-06 7 150878497 150878497 G A ASB10 Silent p.S211S 0.13 TCGA-EE-A2GR-06 7 150878498 150878498 G A ASB10 Missense_Mutation p.S211F 0.14 deleterious(0) benign(0.119) TCGA-EE-A2GR-06 7 151127247 151127247 A G CRYGN Missense_Mutation p.F146L 0.42 tolerated_low_confidence(0.21) possibly_damaging(0.787) TCGA-EE-A2GR-06 7 151880115 151880115 T C KMT2C Missense_Mutation p.K1737E 0.48 probably_damaging(0.952) TCGA-EE-A2GR-06 7 154172103 154172103 C T DPP6 Silent p.P146P 0.34 TCGA-EE-A2GR-06 7 154379772 154379772 C T DPP6 Intron 0.49 TCGA-EE-A2GR-06 7 154561253 154561253 C T DPP6 Missense_Mutation p.P337L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 7 157155859 157155859 C T DNAJB6 Missense_Mutation p.R24W 0.57 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GR-06 7 18066980 18066980 T C PRPS1L1 Silent p.V142V 0.55 TCGA-EE-A2GR-06 7 21598584 21598584 G A DNAH11 Silent p.K220K 0.64 TCGA-EE-A2GR-06 7 2565153 2565153 C T LFNG Silent p.S229S 0.42 TCGA-EE-A2GR-06 7 2565154 2565154 C T LFNG Silent p.L230L 0.42 TCGA-EE-A2GR-06 7 26893780 26893780 A G SKAP2 Missense_Mutation p.Y59H 0.30 tolerated(0.07) benign(0.019) TCGA-EE-A2GR-06 7 27140891 27140891 C T HOXA2 Silent p.R195R 0.21 TCGA-EE-A2GR-06 7 27150227 27150227 C T HOXA3 Silent p.A11A 0.54 TCGA-EE-A2GR-06 7 27187097 27187097 G A HOXA6 Missense_Mutation p.S91L 0.51 tolerated(0.09) possibly_damaging(0.885) TCGA-EE-A2GR-06 7 29160545 29160545 G A CPVL Missense_Mutation p.L45F 0.50 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2GR-06 7 2985573 2985573 G A CARD11 Silent p.L80L 0.49 TCGA-EE-A2GR-06 7 31890269 31890269 G A PDE1C Silent p.F339F 0.47 TCGA-EE-A2GR-06 7 36492222 36492222 C T ANLN 3'UTR 0.42 TCGA-EE-A2GR-06 7 36662820 36662820 A C AOAH Missense_Mutation p.D186E 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 7 37382279 37382279 C T ELMO1 Missense_Mutation p.D6N 0.24 tolerated(0.55) probably_damaging(0.999) TCGA-EE-A2GR-06 7 37780062 37780062 C T GPR141 Missense_Mutation p.L23F 0.44 tolerated(0.13) possibly_damaging(0.58) TCGA-EE-A2GR-06 7 39504291 39504291 T C POU6F2 3'UTR 0.42 TCGA-EE-A2GR-06 7 4153801 4153801 G A SDK1 Missense_Mutation p.E1240K 0.57 deleterious(0) benign(0.259) TCGA-EE-A2GR-06 7 43351432 43351432 G C HECW1 Missense_Mutation p.R33P 0.19 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-EE-A2GR-06 7 43484077 43484077 G T HECW1 Nonsense_Mutation p.E436* 0.50 TCGA-EE-A2GR-06 7 44157611 44157611 G C POLD2 Missense_Mutation p.C91W 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 7 44573051 44573051 G A NPC1L1 Silent p.S796S 0.30 TCGA-EE-A2GR-06 7 44796724 44796724 C T ZMIZ2 Missense_Mutation p.P115L 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-EE-A2GR-06 7 44924288 44924288 C T PURB Silent p.P220P 0.33 TCGA-EE-A2GR-06 7 45007284 45007284 C T MYO1G Missense_Mutation p.E568K 0.38 tolerated(0.28) probably_damaging(0.998) TCGA-EE-A2GR-06 7 45223062 45223062 C T RAMP3 3'UTR 0.24 TCGA-EE-A2GR-06 7 45650040 45650040 G A ADCY1 Silent p.L284L 0.46 TCGA-EE-A2GR-06 7 4794116 4794116 C T FOXK1 Missense_Mutation p.P258L 0.39 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GR-06 7 5254224 5254224 C T WIPI2 Silent p.I90I 0.25 TCGA-EE-A2GR-06 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.49 TCGA-EE-A2GR-06 7 57188776 57188776 C T ZNF479 Missense_Mutation p.G116R 0.10 tolerated(0.26) benign(0.097) TCGA-EE-A2GR-06 7 62758648 62758648 G A ZNF733P RNA 0.38 TCGA-EE-A2GR-06 7 63720599 63720599 G A ZNF679 Missense_Mutation p.G14R 0.26 tolerated(0.05) benign(0.018) TCGA-EE-A2GR-06 7 64291928 64291928 A C ZNF138 Missense_Mutation p.K77T 0.44 deleterious(0) benign(0.005) TCGA-EE-A2GR-06 7 65706081 65706081 T A TPST1 Nonsense_Mutation p.Y223* 0.42 TCGA-EE-A2GR-06 7 71036309 71036309 G A WBSCR17 Silent p.R334R 0.39 TCGA-EE-A2GR-06 7 71488734 71488734 C T CALN1 Missense_Mutation p.D137N 0.43 deleterious(0) benign(0.002) TCGA-EE-A2GR-06 7 72743404 72743404 G A FKBP6 Missense_Mutation p.D73N 0.49 tolerated(0.24) possibly_damaging(0.852) TCGA-EE-A2GR-06 7 73010570 73010570 C T MLXIPL Silent p.A657A 0.18 TCGA-EE-A2GR-06 7 73922530 73922530 C T GTF2IRD1 Silent p.S40S 0.53 TCGA-EE-A2GR-06 7 75044868 75044868 A C POM121C 3'Flank 0.35 TCGA-EE-A2GR-06 7 82578946 82578946 G A PCLO Missense_Mutation p.P3653L 0.49 unknown(0) TCGA-EE-A2GR-06 7 82580540 82580540 G A PCLO Missense_Mutation p.H3122Y 0.32 unknown(0) TCGA-EE-A2GR-06 7 86415737 86415737 G A GRM3 Nonsense_Mutation p.W210* 0.48 TCGA-EE-A2GR-06 7 86416163 86416163 G A GRM3 Missense_Mutation p.R352Q 0.25 tolerated(0.39) benign(0.066) TCGA-EE-A2GR-06 7 86469000 86469000 G A GRM3 Missense_Mutation p.E724K 0.51 tolerated(0.88) benign(0.217) TCGA-EE-A2GR-06 7 87069662 87069662 G A ABCB4 Silent p.I471I 0.16 TCGA-EE-A2GR-06 7 87082419 87082419 C T ABCB4 Missense_Mutation p.G126E 0.40 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A2GR-06 7 87537442 87537442 C T DBF4 Silent p.F663F 0.27 TCGA-EE-A2GR-06 7 90492554 90492554 G A CDK14 Silent p.K185K 0.43 TCGA-EE-A2GR-06 7 91852253 91852253 G A KRIT1 Missense_Mutation p.R432C 0.50 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GR-06 7 94540473 94540473 A G PPP1R9A Missense_Mutation p.N350D 0.37 tolerated(0.66) benign(0.003) TCGA-EE-A2GR-06 7 98563401 98563401 C T TRRAP Silent p.F2346F 0.42 TCGA-EE-A2GR-06 7 98606073 98606073 G A TRRAP Silent p.E3595E 0.40 TCGA-EE-A2GR-06 7 99217214 99217214 C T ZSCAN25 5'UTR 0.45 TCGA-EE-A2GR-06 7 99436751 99436751 G A CYP3A43 Nonsense_Mutation p.W58* 0.44 TCGA-EE-A2GR-06 7 99802320 99802320 G A STAG3 Missense_Mutation p.R958K 0.49 tolerated(1) benign(0.158) TCGA-EE-A2GR-06 7 99802321 99802321 G A STAG3 Silent p.R958R 0.47 TCGA-EE-A2GR-06 8 101014555 101014555 G A RGS22 Missense_Mutation p.R889W 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 8 101146277 101146277 A G FBXO43 Missense_Mutation p.V627A 0.17 deleterious(0.02) possibly_damaging(0.679) TCGA-EE-A2GR-06 8 103359165 103359165 G A UBR5 Missense_Mutation p.P181L 0.51 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GR-06 8 10469369 10469369 C T RP1L1 Missense_Mutation p.D747N 0.49 possibly_damaging(0.615) TCGA-EE-A2GR-06 8 104922644 104922644 G A RIMS2 Intron 0.46 TCGA-EE-A2GR-06 8 104948865 104948865 G A RIMS2 Missense_Mutation p.R821Q 0.42 tolerated_low_confidence(0.07) benign(0.396) TCGA-EE-A2GR-06 8 108306214 108306214 G A ANGPT1 Missense_Mutation p.R330C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 8 110431354 110431354 G A PKHD1L1 Missense_Mutation p.D797N 0.21 tolerated(0.11) benign(0.005) TCGA-EE-A2GR-06 8 110456925 110456925 A T PKHD1L1 Missense_Mutation p.E1609D 0.43 tolerated(0.25) benign(0.165) TCGA-EE-A2GR-06 8 110477210 110477210 G A PKHD1L1 Missense_Mutation p.G2717R 0.20 deleterious(0) benign(0.05) TCGA-EE-A2GR-06 8 110984918 110984918 C T KCNV1 Missense_Mutation p.G187E 0.34 tolerated(0.53) benign(0.026) TCGA-EE-A2GR-06 8 113326686 113326686 C T CSMD3 Silent p.K2507K 0.31 TCGA-EE-A2GR-06 8 113841920 113841920 G A CSMD3 Silent p.L618L 0.33 TCGA-EE-A2GR-06 8 117784108 117784108 C T UTP23 3'UTR 0.50 TCGA-EE-A2GR-06 8 118185004 118185004 G A SLC30A8 3'UTR 0.24 TCGA-EE-A2GR-06 8 120118306 120118306 G A COLEC10 Missense_Mutation p.G237E 0.25 tolerated(0.17) benign(0.2) TCGA-EE-A2GR-06 8 121379423 121379423 C T COL14A1 Silent p.I1697I 0.50 TCGA-EE-A2GR-06 8 121457547 121457547 G A MRPL13 5'UTR 0.47 TCGA-EE-A2GR-06 8 121509778 121509778 C T MTBP Silent p.T531T 0.30 TCGA-EE-A2GR-06 8 121519043 121519043 T C MTBP Missense_Mutation p.Y609H 0.47 tolerated(0.74) benign(0.001) TCGA-EE-A2GR-06 8 124659207 124659207 C T KLHL38 Missense_Mutation p.M466I 0.48 tolerated(0.16) benign(0.001) TCGA-EE-A2GR-06 8 125094552 125094552 T C FER1L6 Missense_Mutation p.F1415S 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 8 125551344 125551344 C T TATDN1 5'Flank 0.40 TCGA-EE-A2GR-06 8 125551345 125551345 C T TATDN1 5'Flank 0.42 TCGA-EE-A2GR-06 8 131848633 131848633 G A ADCY8 Silent p.S855S 0.24 TCGA-EE-A2GR-06 8 133141656 133141656 C T KCNQ3 Silent p.S824S 0.32 TCGA-EE-A2GR-06 8 133142162 133142162 C T KCNQ3 Missense_Mutation p.E656K 0.26 tolerated(0.15) benign(0.16) TCGA-EE-A2GR-06 8 133142163 133142163 C T KCNQ3 Silent p.T655T 0.26 TCGA-EE-A2GR-06 8 135649862 135649862 G A ZFAT Missense_Mutation p.P97L 0.40 tolerated(0.17) benign(0.003) TCGA-EE-A2GR-06 8 135649863 135649863 G A ZFAT Missense_Mutation p.P97S 0.41 tolerated(0.38) benign(0.104) TCGA-EE-A2GR-06 8 139155261 139155261 C T FAM135B Missense_Mutation p.R1211Q 0.43 deleterious(0) probably_damaging(0.909) TCGA-EE-A2GR-06 8 139165086 139165086 C T FAM135B Silent p.E544E 0.52 TCGA-EE-A2GR-06 8 139790603 139790603 C T COL22A1 Missense_Mutation p.G584E 0.40 unknown(0) TCGA-EE-A2GR-06 8 139790604 139790604 C T COL22A1 Missense_Mutation p.G584R 0.44 unknown(0) TCGA-EE-A2GR-06 8 144399902 144399902 G A TOP1MT Silent p.L441L 0.38 TCGA-EE-A2GR-06 8 144399903 144399903 G A TOP1MT Silent p.A440A 0.38 TCGA-EE-A2GR-06 8 144809125 144809125 G A FAM83H Missense_Mutation p.L836F 0.24 tolerated_low_confidence(0.13) benign(0.157) TCGA-EE-A2GR-06 8 144947143 144947143 G A EPPK1 Silent p.L93L 0.55 TCGA-EE-A2GR-06 8 145058972 145058972 G A PARP10 Silent p.L400L 0.53 TCGA-EE-A2GR-06 8 145058973 145058973 G A PARP10 Silent p.G399G 0.51 TCGA-EE-A2GR-06 8 145059330 145059330 G A PARP10 Silent p.T280T 0.44 TCGA-EE-A2GR-06 8 145059331 145059331 G A PARP10 Missense_Mutation p.T280I 0.44 deleterious(0.03) benign(0.002) TCGA-EE-A2GR-06 8 145111541 145111541 G A OPLAH Silent p.F608F 0.76 TCGA-EE-A2GR-06 8 145535756 145535756 C T HSF1 Missense_Mutation p.T323I 0.29 deleterious(0.01) benign(0.108) TCGA-EE-A2GR-06 8 145773447 145773447 C T ARHGAP39 Silent p.Q341Q 0.45 TCGA-EE-A2GR-06 8 17055097 17055097 G A ZDHHC2 Missense_Mutation p.R127Q 0.21 deleterious(0.01) possibly_damaging(0.687) TCGA-EE-A2GR-06 8 17067919 17067919 C T ZDHHC2 Missense_Mutation p.P294S 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 8 17415852 17415852 C T SLC7A2 Missense_Mutation p.S455F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 8 17823920 17823920 C T PCM1 Silent p.F1053F 0.18 TCGA-EE-A2GR-06 8 2057237 2057237 T G MYOM2 Missense_Mutation p.V1032G 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 8 21891767 21891767 A C NPM2 Missense_Mutation p.K171T 0.23 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GR-06 8 22006231 22006231 G A LGI3 Silent p.G363G 0.48 TCGA-EE-A2GR-06 8 22969266 22969266 G A TNFRSF10C Missense_Mutation p.E32K 0.19 tolerated_low_confidence(0.12) benign(0.177) TCGA-EE-A2GR-06 8 23049230 23049230 C T TNFRSF10A Missense_Mutation p.G462S 0.51 deleterious(0.05) possibly_damaging(0.831) TCGA-EE-A2GR-06 8 24170965 24170965 G A ADAM28 Missense_Mutation p.G150R 0.23 tolerated(0.23) benign(0.309) TCGA-EE-A2GR-06 8 24184083 24184083 G A ADAM28 Missense_Mutation p.G303R 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GR-06 8 26364995 26364995 G A PNMA2 3'UTR 0.62 TCGA-EE-A2GR-06 8 27145561 27145561 G A TRIM35 Missense_Mutation p.R330C 0.39 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GR-06 8 27145562 27145562 G A TRIM35 Silent p.Y329Y 0.39 TCGA-EE-A2GR-06 8 27737269 27737269 G A SCARA5 Missense_Mutation p.P390S 0.50 tolerated(0.44) benign(0.134) TCGA-EE-A2GR-06 8 27931884 27931884 C T NUGGC Splice_Site p.X15_splice 0.24 TCGA-EE-A2GR-06 8 27995239 27995239 C T ELP3 Missense_Mutation p.R311C 0.46 deleterious(0.04) benign(0.261) TCGA-EE-A2GR-06 8 2815238 2815238 C T CSMD1 Missense_Mutation p.G3265E 0.35 probably_damaging(1) TCGA-EE-A2GR-06 8 2832092 2832092 A C CSMD1 Missense_Mutation p.L2874R 0.25 benign(0.009) TCGA-EE-A2GR-06 8 28573590 28573590 C T EXTL3 Missense_Mutation p.T5I 0.38 tolerated_low_confidence(0.13) benign(0.086) TCGA-EE-A2GR-06 8 30210582 30210582 C T TUBBP1 RNA 0.40 TCGA-EE-A2GR-06 8 30699662 30699662 G A TEX15 Missense_Mutation p.S2291F 0.17 tolerated(0.26) benign(0.006) TCGA-EE-A2GR-06 8 33449474 33449474 C T DUSP26 3'UTR 0.47 TCGA-EE-A2GR-06 8 35544065 35544065 G A UNC5D Missense_Mutation p.D308N 0.30 deleterious(0.03) probably_damaging(0.924) TCGA-EE-A2GR-06 8 37611016 37611016 A G ERLIN2 Missense_Mutation p.Y263C 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 8 37611017 37611017 C A ERLIN2 Nonsense_Mutation p.Y263* 0.29 TCGA-EE-A2GR-06 8 37734845 37734845 G A RAB11FIP1 Missense_Mutation p.S199L 0.46 tolerated(0.07) possibly_damaging(0.857) TCGA-EE-A2GR-06 8 38775471 38775471 C T PLEKHA2 Silent p.N8N 0.53 TCGA-EE-A2GR-06 8 38899581 38899581 C T ADAM9 Missense_Mutation p.S416F 0.55 tolerated(0.72) benign(0) TCGA-EE-A2GR-06 8 39581281 39581281 G A ADAM18 Missense_Mutation p.E678K 0.53 tolerated(1) benign(0.001) TCGA-EE-A2GR-06 8 39785653 39785653 C T IDO1 Silent p.F387F 0.54 TCGA-EE-A2GR-06 8 41542162 41542162 G A ANK1 Silent p.I1520I 0.54 TCGA-EE-A2GR-06 8 41585482 41585482 C T ANK1 Missense_Mutation p.D124N 0.38 tolerated(0.22) benign(0.007) TCGA-EE-A2GR-06 8 52232394 52232394 C T PXDNL 3'UTR 0.43 TCGA-EE-A2GR-06 8 53030987 53030987 C T ST18 Missense_Mutation p.E924K 0.53 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2GR-06 8 55534729 55534729 G A RP1 Missense_Mutation p.G223E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 8 55540061 55540061 G A RP1 Missense_Mutation p.D1207N 0.46 tolerated(0.3) benign(0.009) TCGA-EE-A2GR-06 8 56864641 56864641 C T LYN Missense_Mutation p.P202S 0.14 tolerated(0.99) benign(0.005) TCGA-EE-A2GR-06 8 57228860 57228860 C T SDR16C5 Missense_Mutation p.G16E 0.50 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GR-06 8 61693655 61693655 C T CHD7 Missense_Mutation p.P588S 0.24 possibly_damaging(0.641) TCGA-EE-A2GR-06 8 66517673 66517673 G A ARMC1 Missense_Mutation p.S189L 0.38 deleterious(0.04) possibly_damaging(0.608) TCGA-EE-A2GR-06 8 665918 665918 G A ERICH1 Missense_Mutation p.P38S 0.43 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2GR-06 8 67062070 67062070 G A TRIM55 Missense_Mutation p.G265E 0.48 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 8 67796106 67796106 G A MCMDC2 Missense_Mutation p.G317E 0.55 deleterious(0) probably_damaging(0.911) TCGA-EE-A2GR-06 8 6873538 6873538 C T DEFA3 Missense_Mutation p.G87R 0.16 tolerated(0.08) benign(0.034) TCGA-EE-A2GR-06 8 70591657 70591657 G A SLCO5A1 Silent p.F660F 0.20 TCGA-EE-A2GR-06 8 70667684 70667684 C T SLCO5A1 Silent p.S411S 0.14 TCGA-EE-A2GR-06 8 70980555 70980555 G A PRDM14 Silent p.I274I 0.23 TCGA-EE-A2GR-06 8 71068277 71068277 G A NCOA2 Missense_Mutation p.P775S 0.41 tolerated(0.22) benign(0.05) TCGA-EE-A2GR-06 8 72267115 72267115 G A EYA1 Missense_Mutation p.P9L 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GR-06 8 77618201 77618201 G T ZFHX4 Missense_Mutation p.R626S 0.41 benign(0.402) TCGA-EE-A2GR-06 8 77766226 77766226 G A ZFHX4 Missense_Mutation p.D2357N 0.47 probably_damaging(0.97) TCGA-EE-A2GR-06 8 77768291 77768291 G A ZFHX4 Missense_Mutation p.R3045Q 0.26 probably_damaging(0.935) TCGA-EE-A2GR-06 8 77768292 77768292 G A ZFHX4 Silent p.R3045R 0.27 TCGA-EE-A2GR-06 8 87242269 87242269 G A SLC7A13 Nonsense_Mutation p.Q80* 0.39 TCGA-EE-A2GR-06 8 88885780 88885780 G A DCAF4L2 Silent p.S140S 0.50 TCGA-EE-A2GR-06 8 91081394 91081394 C T CALB1 Silent p.E101E 0.14 TCGA-EE-A2GR-06 8 92261854 92261854 T C SLC26A7 5'UTR 0.58 TCGA-EE-A2GR-06 8 95530059 95530059 G A KIAA1429 Silent p.L875L 0.46 TCGA-EE-A2GR-06 8 98155407 98155407 C T CPQ Missense_Mutation p.S472F 0.14 deleterious(0.01) benign(0.347) TCGA-EE-A2GR-06 8 99146750 99146750 C T POP1 Missense_Mutation p.L292F 0.23 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GR-06 9 103348047 103348047 G A MURC Missense_Mutation p.E137K 0.29 deleterious(0.04) probably_damaging(0.972) TCGA-EE-A2GR-06 9 107289476 107289476 G A OR13C4 Silent p.N5N 0.25 TCGA-EE-A2GR-06 9 107367878 107367878 C T OR13C2 Missense_Mutation p.E11K 0.45 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2GR-06 9 111979347 111979347 G A EPB41L4B Silent p.F496F 0.58 TCGA-EE-A2GR-06 9 112898773 112898773 C T PALM2-AKAP2 Silent p.L317L 0.47 TCGA-EE-A2GR-06 9 113228143 113228143 A G SVEP1 Splice_Site p.X1108_splice 0.30 TCGA-EE-A2GR-06 9 116857371 116857371 C T KIF12 Missense_Mutation p.E213K 0.29 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2GR-06 9 116857589 116857589 C T KIF12 Missense_Mutation p.D169N 0.57 deleterious(0.02) benign(0.434) TCGA-EE-A2GR-06 9 117121948 117121948 C T AKNA Silent p.G806G 0.33 TCGA-EE-A2GR-06 9 117168646 117168646 G A DFNB31 Missense_Mutation p.P742L 0.31 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A2GR-06 9 117901 117901 G A FOXD4 Silent p.G73G 0.90 TCGA-EE-A2GR-06 9 119097311 119097311 G A PAPPA Missense_Mutation p.S1190N 0.15 tolerated(0.3) benign(0.213) TCGA-EE-A2GR-06 9 119115177 119115177 C T PAPPA Missense_Mutation p.S1386F 0.44 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2GR-06 9 119461313 119461313 C T TRIM32 Missense_Mutation p.P431L 0.52 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GR-06 9 120475240 120475240 G A TLR4 Silent p.E278E 0.48 TCGA-EE-A2GR-06 9 121929706 121929706 A G BRINP1 Missense_Mutation p.F648L 0.44 tolerated(0.08) benign(0.002) TCGA-EE-A2GR-06 9 123675735 123675735 C - TRAF1 Frame_Shift_Del p.K193Sfs*38 0.23 TCGA-EE-A2GR-06 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.17 tolerated(0.12) benign(0.004) TCGA-EE-A2GR-06 9 125145992 125145992 G A PTGS1 Missense_Mutation p.G323S 0.26 tolerated(0.19) benign(0.006) TCGA-EE-A2GR-06 9 125316021 125316021 C T OR1N2 Silent p.I191I 0.48 TCGA-EE-A2GR-06 9 125329963 125329963 G A OR1L8 Missense_Mutation p.S265F 0.27 deleterious(0.02) benign(0.208) TCGA-EE-A2GR-06 9 125330187 125330187 G A OR1L8 Silent p.C190C 0.55 TCGA-EE-A2GR-06 9 125777884 125777884 C T RABGAP1 Missense_Mutation p.L538F 0.52 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GR-06 9 130912756 130912756 G A LCN2 Intron 0.31 TCGA-EE-A2GR-06 9 130912757 130912757 G A LCN2 Intron 0.31 TCGA-EE-A2GR-06 9 130982538 130982538 G A DNM1 Missense_Mutation p.R256Q 0.18 tolerated(0.16) benign(0.229) TCGA-EE-A2GR-06 9 131568245 131568245 C T TBC1D13 Silent p.F342F 0.25 TCGA-EE-A2GR-06 9 131670802 131670802 G A LRRC8A Silent p.L453L 0.55 TCGA-EE-A2GR-06 9 134073038 134073038 C T NUP214 Missense_Mutation p.P1386L 0.49 benign(0.048) TCGA-EE-A2GR-06 9 134073039 134073039 C T NUP214 Silent p.P1386P 0.49 TCGA-EE-A2GR-06 9 134351178 134351178 C T PRRC2B Missense_Mutation p.S1221F 0.36 deleterious(0.01) possibly_damaging(0.498) TCGA-EE-A2GR-06 9 135984181 135984181 G A RALGDS Silent p.P219P 0.34 TCGA-EE-A2GR-06 9 137620602 137620602 C T COL5A1 Silent p.T291T 0.45 TCGA-EE-A2GR-06 9 137806247 137806247 C T FCN1 Silent p.G97G 0.60 TCGA-EE-A2GR-06 9 138376964 138376964 G A PPP1R26 Missense_Mutation p.G203E 0.44 tolerated(0.17) benign(0.136) TCGA-EE-A2GR-06 9 139391512 139391512 G A NOTCH1 Missense_Mutation p.P2227S 0.25 tolerated(0.05) possibly_damaging(0.78) TCGA-EE-A2GR-06 9 140151454 140151454 C T NELFB Missense_Mutation p.S182F 0.42 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A2GR-06 9 140242540 140242540 G A EXD3 Missense_Mutation p.H661Y 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GR-06 9 14748452 14748452 C T FREM1 Missense_Mutation p.D1915N 1.00 tolerated(0.23) benign(0.002) TCGA-EE-A2GR-06 9 14748456 14748456 G A FREM1 Silent p.G1913G 0.55 TCGA-EE-A2GR-06 9 14851399 14851399 C T FREM1 Silent p.V345V 0.93 TCGA-EE-A2GR-06 9 18829843 18829843 C T ADAMTSL1 Missense_Mutation p.P1373S 0.90 tolerated(0.24) benign(0.063) TCGA-EE-A2GR-06 9 21217191 21217191 C T IFNA16 Silent p.L38L 0.89 TCGA-EE-A2GR-06 9 2718192 2718192 C T KCNV2 Silent p.F151F 0.90 TCGA-EE-A2GR-06 9 67951980 67951980 G A ANKRD20A1 Missense_Mutation p.E315K 0.13 tolerated(0.46) benign(0.007) TCGA-EE-A2GR-06 9 69256871 69256871 G A CBWD6 Missense_Mutation p.S87F 0.51 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GR-06 9 73461349 73461349 G A TRPM3 Silent p.L207L 0.43 TCGA-EE-A2GR-06 9 74838040 74838040 C A GDA Missense_Mutation p.S204Y 0.37 deleterious(0) benign(0.194) TCGA-EE-A2GR-06 9 75309495 75309495 G A TMC1 Missense_Mutation p.R34Q 0.50 tolerated_low_confidence(0.16) possibly_damaging(0.602) TCGA-EE-A2GR-06 9 77377950 77377950 C T TRPM6 Missense_Mutation p.D1213N 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 9 78808217 78808217 A T PCSK5 Intron 0.48 TCGA-EE-A2GR-06 9 78808218 78808218 C T PCSK5 Intron 0.48 TCGA-EE-A2GR-06 9 79322453 79322453 C T PRUNE2 Silent p.Q1579Q 0.56 TCGA-EE-A2GR-06 9 79326018 79326018 G A PRUNE2 Missense_Mutation p.S391F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 9 8317885 8317885 A T PTPRD Missense_Mutation p.Y1910N 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 9 84533408 84533408 G A SPATA31D5P RNA 0.64 TCGA-EE-A2GR-06 9 84564597 84564597 C T RP11-383M4.6 Intron 0.41 TCGA-EE-A2GR-06 9 91266959 91266959 G A RP13-60M5.2 RNA 0.53 TCGA-EE-A2GR-06 9 95021171 95021171 G A IARS Missense_Mutation p.R661C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 9 95400522 95400522 G A IPPK Missense_Mutation p.P226L 0.26 tolerated(0.3) benign(0.079) TCGA-EE-A2GR-06 9 95480163 95480163 G A BICD2 Missense_Mutation p.T725I 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 9 95576272 95576272 G A ANKRD19P RNA 0.51 TCGA-EE-A2GR-06 9 96320190 96320190 C T FAM120A Missense_Mutation p.P856S 0.41 deleterious(0.02) possibly_damaging(0.681) TCGA-EE-A2GR-06 9 96938675 96938675 C T MIRLET7F1 RNA 0.61 TCGA-EE-A2GR-06 X 100395771 100395771 C T CENPI Intron 0.98 TCGA-EE-A2GR-06 X 101818258 101818258 G A NXF4 RNA 0.98 TCGA-EE-A2GR-06 X 101970302 101970302 C T GPRASP2 Silent p.L169L 0.96 TCGA-EE-A2GR-06 X 102529150 102529150 C T TCEAL5 Silent p.R114R 0.42 TCGA-EE-A2GR-06 X 105280645 105280645 G A SERPINA7 Silent p.F135F 0.93 TCGA-EE-A2GR-06 X 107829938 107829938 C T COL4A5 Missense_Mutation p.P376S 1.00 unknown(0) TCGA-EE-A2GR-06 X 110644262 110644262 C T DCX Missense_Mutation p.E302K 0.96 deleterious(0.05) benign(0.105) TCGA-EE-A2GR-06 X 111698219 111698219 C T ZCCHC16 Missense_Mutation p.S88F 1.00 deleterious(0.04) possibly_damaging(0.487) TCGA-EE-A2GR-06 X 115304028 115304028 C T AGTR2 Silent p.P165P 0.40 TCGA-EE-A2GR-06 X 123630927 123630927 C T TENM1 Missense_Mutation p.D1212N 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 X 12905306 12905308 CAG - TLR7 In_Frame_Del p.A561del 0.97 TCGA-EE-A2GR-06 X 12939916 12939916 G A TLR8 Silent p.E919E 0.98 TCGA-EE-A2GR-06 X 130407667 130407667 C T IGSF1 3'UTR 0.41 TCGA-EE-A2GR-06 X 134156298 134156298 C T FAM127C Silent p.K64K 0.39 TCGA-EE-A2GR-06 X 135432151 135432151 G A GPR112 Missense_Mutation p.D2096N 0.64 tolerated(0.1) benign(0.042) TCGA-EE-A2GR-06 X 135432542 135432542 C T GPR112 Missense_Mutation p.S2226F 0.98 deleterious(0.03) benign(0.145) TCGA-EE-A2GR-06 X 135957686 135957686 G A RBMX Silent p.P200P 1.00 TCGA-EE-A2GR-06 X 135957687 135957687 G A RBMX Missense_Mutation p.P200L 1.00 deleterious(0.04) possibly_damaging(0.612) TCGA-EE-A2GR-06 X 140336608 140336608 C T SPANXC 5'UTR 0.31 TCGA-EE-A2GR-06 X 140992759 140992759 C T MAGEC1 5'UTR 1.00 TCGA-EE-A2GR-06 X 141291314 141291314 G A MAGEC2 Missense_Mutation p.L154F 0.51 deleterious(0.04) possibly_damaging(0.863) TCGA-EE-A2GR-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.98 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GR-06 X 151935284 151935284 C T MAGEA3 Missense_Mutation p.G295R 0.45 deleterious(0.01) possibly_damaging(0.646) TCGA-EE-A2GR-06 X 153671094 153671094 C T GDI1 3'UTR 0.47 TCGA-EE-A2GR-06 X 1546840 1546840 G A ASMTL Silent p.S228S 0.25 TCGA-EE-A2GR-06 X 1742086 1742086 G A ASMT Missense_Mutation p.G42R 0.57 tolerated(0.31) benign(0.049) TCGA-EE-A2GR-06 X 20074887 20074887 C T MAP7D2 Missense_Mutation p.R132H 1.00 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 X 21627233 21627233 T A CNKSR2 Silent p.L730L 0.97 TCGA-EE-A2GR-06 X 24229455 24229455 C T ZFX Missense_Mutation p.H794Y 1.00 deleterious(0) probably_damaging(0.977) TCGA-EE-A2GR-06 X 24608156 24608156 A G PCYT1B Missense_Mutation p.F157S 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A2GR-06 X 2853178 2853178 C T ARSE Missense_Mutation p.A489T 0.56 tolerated(0.12) benign(0.422) TCGA-EE-A2GR-06 X 2942108 2942108 C T ARSH Silent p.T316T 0.60 TCGA-EE-A2GR-06 X 29973543 29973543 C T IL1RAPL1 Missense_Mutation p.P566L 0.14 tolerated(0.34) possibly_damaging(0.541) TCGA-EE-A2GR-06 X 3229661 3229661 C T MXRA5 Missense_Mutation p.D2195N 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2GR-06 X 37027926 37027926 G A FAM47C Silent p.K481K 0.98 TCGA-EE-A2GR-06 X 47045478 47045478 G A RBM10 Silent p.R815R 1.00 TCGA-EE-A2GR-06 X 47045479 47045479 G A RBM10 Missense_Mutation p.D816N 1.00 deleterious(0) benign(0.136) TCGA-EE-A2GR-06 X 47835805 47835805 G A ZNF182 Nonsense_Mutation p.Q561* 1.00 TCGA-EE-A2GR-06 X 51149957 51149957 C T CXorf67 Missense_Mutation p.S30F 0.57 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GR-06 X 52896099 52896099 C T XAGE3 Silent p.L22L 0.53 TCGA-EE-A2GR-06 X 54319341 54319341 G A WNK3 Nonsense_Mutation p.Q673* 0.22 TCGA-EE-A2GR-06 X 55650279 55650279 C T FOXR2 Silent p.I45I 0.95 TCGA-EE-A2GR-06 X 69945116 69945116 A G TEX11 Silent p.L322L 0.94 TCGA-EE-A2GR-06 X 71925051 71925051 C T PHKA1 Missense_Mutation p.R94K 0.55 tolerated(0.1) benign(0.081) TCGA-EE-A2GR-06 X 72433506 72433506 T C NAP1L2 Missense_Mutation p.K275E 1.00 tolerated(0.06) benign(0.371) TCGA-EE-A2GR-06 X 73066500 73066500 G A XIST RNA 0.32 TCGA-EE-A2GR-06 X 78216644 78216644 C T P2RY10 Silent p.I209I 0.49 TCGA-EE-A2GR-06 X 83126557 83126557 G A CYLC1 Silent p.L52L 0.97 TCGA-EE-A2GR-06 X 84606427 84606427 G A POF1B Missense_Mutation p.H157Y 0.45 deleterious_low_confidence(0.01) benign(0.019) TCGA-EE-A2GR-06 X 99657660 99657660 G A PCDH19 Silent p.R826R 1.00 TCGA-EE-A2GR-06 Y 14902337 14902337 C T USP9Y Intron 0.88 TCGA-EE-A2GR-06 Y 15027838 15027838 T C DDX3Y Missense_Mutation p.V403A 0.97 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GR-06 Y 6938851 6938851 A C TBL1Y Missense_Mutation p.E227D 0.97 tolerated(0.24) probably_damaging(0.989) TCGA-EE-A2GS-06 10 105048212 105048212 C T INA Missense_Mutation p.P429L 0.82 tolerated(0.1) benign(0.017) TCGA-EE-A2GS-06 10 45642860 45642860 G A RP11-445N18.7 RNA 0.88 TCGA-EE-A2GS-06 10 47087930 47087930 C T NPY4R 3'UTR 0.46 TCGA-EE-A2GS-06 10 7230608 7230608 G A SFMBT2 Nonsense_Mutation p.Q596* 0.78 TCGA-EE-A2GS-06 10 81066066 81066066 C T ZMIZ1 Missense_Mutation p.P878L 0.82 benign(0.081) TCGA-EE-A2GS-06 10 89692905 89692905 G T PTEN Missense_Mutation p.R130L 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 10 92509351 92509351 C T HTR7 Silent p.R180R 0.78 TCGA-EE-A2GS-06 10 96602760 96602760 C T CYP2C19 Silent p.F376F 0.71 TCGA-EE-A2GS-06 11 108383806 108383806 G A EXPH5 Missense_Mutation p.L810F 0.41 tolerated(0.32) benign(0.013) TCGA-EE-A2GS-06 11 113604494 113604494 G A ZW10 Silent p.S754S 0.59 TCGA-EE-A2GS-06 11 117209316 117209316 C T CEP164 Missense_Mutation p.P5L 0.43 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A2GS-06 11 119214576 119214576 G A MFRP Silent p.Y358Y 0.46 TCGA-EE-A2GS-06 11 120916475 120916475 C T TBCEL Missense_Mutation p.R26C 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 11 121008491 121008491 C T TECTA Silent p.I1101I 0.46 TCGA-EE-A2GS-06 11 124012361 124012361 G A VWA5A Missense_Mutation p.E646K 0.33 tolerated(0.91) benign(0) TCGA-EE-A2GS-06 11 124189897 124189897 A G OR8D2 Missense_Mutation p.L66S 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 11 124310277 124310277 G A OR8B8 Silent p.S235S 0.47 TCGA-EE-A2GS-06 11 124413368 124413368 G A OR8B12 Silent p.F61F 0.38 TCGA-EE-A2GS-06 11 124757060 124757060 G A ROBO4 Missense_Mutation p.P750S 0.48 tolerated(0.95) possibly_damaging(0.641) TCGA-EE-A2GS-06 11 1258233 1258233 G A MUC5B Missense_Mutation p.G1046R 0.50 unknown(0) TCGA-EE-A2GS-06 11 129306863 129306863 G A BARX2 Silent p.R135R 0.55 TCGA-EE-A2GS-06 11 133789847 133789847 G A IGSF9B Missense_Mutation p.P1258L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-EE-A2GS-06 11 13514139 13514139 C T PTH Nonsense_Mutation p.W54* 0.39 TCGA-EE-A2GS-06 11 17483244 17483244 G A ABCC8 Silent p.F236F 0.43 TCGA-EE-A2GS-06 11 18158798 18158798 G A MRGPRX3 Missense_Mutation p.G17R 0.34 tolerated(0.15) benign(0.017) TCGA-EE-A2GS-06 11 18158799 18158799 G A MRGPRX3 Missense_Mutation p.G17E 0.34 tolerated(0.23) benign(0.019) TCGA-EE-A2GS-06 11 4843571 4843571 A G OR51F2 Missense_Mutation p.K319R 0.40 tolerated(0.62) benign(0.292) TCGA-EE-A2GS-06 11 5247992 5247992 C T HBB Missense_Mutation p.E44K 0.46 tolerated(0.21) benign(0.091) TCGA-EE-A2GS-06 11 5264433 5264433 C T HBG1 3'Flank 0.52 TCGA-EE-A2GS-06 11 5275573 5275573 C T HBG2 Silent p.Q88Q 0.28 TCGA-EE-A2GS-06 11 55433566 55433566 G A OR4C6 Silent p.G308G 0.40 TCGA-EE-A2GS-06 11 55607076 55607076 G A OR5D16 Silent p.V283V 0.60 TCGA-EE-A2GS-06 11 56757297 56757297 G A OR5AK2 Silent p.V303V 0.35 TCGA-EE-A2GS-06 11 6007845 6007845 G A OR52L1 Missense_Mutation p.H106Y 0.50 deleterious(0.02) benign(0.001) TCGA-EE-A2GS-06 11 63057665 63057665 G A SLC22A10 Missense_Mutation p.V10I 0.37 tolerated(0.07) benign(0.125) TCGA-EE-A2GS-06 11 64676581 64676581 C T ATG2A Nonsense_Mutation p.W749* 0.28 TCGA-EE-A2GS-06 11 6648377 6648377 G A DCHS1 Silent p.L1965L 0.35 TCGA-EE-A2GS-06 11 67222858 67222858 G A CABP4 5'UTR 0.43 TCGA-EE-A2GS-06 11 76372239 76372239 C T LRRC32 Missense_Mutation p.G133E 0.44 tolerated(0.06) probably_damaging(0.937) TCGA-EE-A2GS-06 11 88911404 88911412 TTCATGGGA - TYR In_Frame_Del p.M96_F98del 0.25 TCGA-EE-A2GS-06 11 9225655 9225655 G A DENND5A Silent p.P167P 0.32 TCGA-EE-A2GS-06 11 9225656 9225656 G A DENND5A Missense_Mutation p.P167L 0.32 tolerated(0.07) benign(0.027) TCGA-EE-A2GS-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.44 tolerated(0.09) possibly_damaging(0.653) TCGA-EE-A2GS-06 12 10467363 10467363 C T KLRD1 Missense_Mutation p.R171C 0.41 tolerated(0.08) probably_damaging(0.98) TCGA-EE-A2GS-06 12 109926454 109926454 G A UBE3B Nonsense_Mutation p.W175* 0.40 TCGA-EE-A2GS-06 12 116972508 116972508 C T LINC00173 RNA 0.28 TCGA-EE-A2GS-06 12 122296617 122296617 C T HPD Silent p.T2T 0.35 TCGA-EE-A2GS-06 12 12311842 12311842 G A LRP6 Silent p.C904C 0.36 TCGA-EE-A2GS-06 12 124333344 124333344 G A DNAH10 Missense_Mutation p.R1888Q 0.37 probably_damaging(1) TCGA-EE-A2GS-06 12 14943565 14943565 G A WBP11 Silent p.S378S 0.43 TCGA-EE-A2GS-06 12 1749083 1749083 G A WNT5B Missense_Mutation p.G188R 0.33 tolerated(0.08) probably_damaging(1) TCGA-EE-A2GS-06 12 4736158 4736158 G A AKAP3 Missense_Mutation p.P637L 0.42 tolerated(0.11) possibly_damaging(0.535) TCGA-EE-A2GS-06 12 48458952 48458952 G A SENP1 Missense_Mutation p.R391C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 12 50867196 50867196 A G LARP4 Splice_Site p.X516_splice 0.79 TCGA-EE-A2GS-06 12 53512134 53512134 G A SOAT2 Missense_Mutation p.G260D 0.38 tolerated(0.22) benign(0.086) TCGA-EE-A2GS-06 12 55420705 55420705 G T NEUROD4 Missense_Mutation p.G161V 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 12 55641806 55641806 C T OR6C74 Silent p.V245V 0.43 TCGA-EE-A2GS-06 12 63225985 63225985 G A PPM1H Missense_Mutation p.A107V 0.58 tolerated(0.35) benign(0.02) TCGA-EE-A2GS-06 12 65088754 65088754 C G RASSF3 3'UTR 0.36 TCGA-EE-A2GS-06 12 75672694 75672694 G A CAPS2 Intron 0.48 TCGA-EE-A2GS-06 12 7640090 7640090 C T CD163 Missense_Mutation p.G639R 0.36 tolerated(0.61) probably_damaging(1) TCGA-EE-A2GS-06 12 7900065 7900065 C T CLEC4C 5'UTR 0.36 TCGA-EE-A2GS-06 12 8073989 8073989 G A SLC2A3 3'UTR 0.26 TCGA-EE-A2GS-06 12 85492149 85492149 G A LRRIQ1 Silent p.L968L 0.44 TCGA-EE-A2GS-06 12 8757440 8757440 G A AICDA Missense_Mutation p.S169L 0.41 deleterious(0) possibly_damaging(0.538) TCGA-EE-A2GS-06 13 103525627 103525627 C T ERCC5 Silent p.F966F 0.40 TCGA-EE-A2GS-06 13 113771805 113771805 G A F7 Missense_Mutation p.G234R 0.47 tolerated(0.09) benign(0.109) TCGA-EE-A2GS-06 13 114164616 114164616 C T TMCO3 Silent p.L368L 0.45 TCGA-EE-A2GS-06 13 27847287 27847287 C T RASL11A Nonsense_Mutation p.Q129* 0.40 TCGA-EE-A2GS-06 13 36788623 36788623 G A SOHLH2 Intron 0.36 TCGA-EE-A2GS-06 13 37679273 37679273 C T CSNK1A1L Missense_Mutation p.E41K 0.37 deleterious_low_confidence(0.04) benign(0.095) TCGA-EE-A2GS-06 13 38266349 38266349 G A TRPC4 Missense_Mutation p.P341S 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GS-06 14 100828141 100828141 G A WARS Missense_Mutation p.H73Y 0.36 deleterious(0.04) benign(0.007) TCGA-EE-A2GS-06 14 102792356 102792356 G A ZNF839 Missense_Mutation p.G108E 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GS-06 14 106173562 106173562 T C IGHA1 Silent p.K335K 0.13 TCGA-EE-A2GS-06 14 106926339 106926339 G A IGHV3-43 Missense_Mutation p.S68F 0.45 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-EE-A2GS-06 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.41 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A2GS-06 14 19378109 19378109 G A OR11H12 Silent p.L172L 0.21 TCGA-EE-A2GS-06 14 22476215 22476215 G A TRAV19 Missense_Mutation p.D49N 0.44 tolerated(0.28) benign(0.017) TCGA-EE-A2GS-06 14 22521111 22521111 C T TRAV21 Silent p.F44F 0.39 TCGA-EE-A2GS-06 14 22891808 22891808 C T TRDV2 Silent p.L40L 0.54 TCGA-EE-A2GS-06 14 22970647 22970647 C T TRAJ39 Silent p.%3D 0.35 TCGA-EE-A2GS-06 14 23855281 23855281 G A MYH6 Silent p.I1673I 0.26 TCGA-EE-A2GS-06 14 26918122 26918122 C T NOVA1 Silent p.K189K 0.38 TCGA-EE-A2GS-06 14 29237290 29237290 A C FOXG1 Missense_Mutation p.T269P 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GS-06 14 38724540 38724540 C T CLEC14A Missense_Mutation p.E230K 0.45 tolerated(0.1) benign(0.341) TCGA-EE-A2GS-06 14 68249851 68249851 G A ZFYVE26 Missense_Mutation p.R1340C 0.35 tolerated(0.07) benign(0.001) TCGA-EE-A2GS-06 14 69795228 69795228 G A GALNT16 Silent p.L210L 0.43 TCGA-EE-A2GS-06 14 92170938 92170938 C T CATSPERB Missense_Mutation p.D192N 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 14 94400990 94400990 C T ASB2 3'UTR 0.31 TCGA-EE-A2GS-06 15 20488820 20488820 C T CHEK2P2 RNA 0.14 TCGA-EE-A2GS-06 15 24923948 24923948 G A NPAP1 Silent p.K978K 0.31 TCGA-EE-A2GS-06 15 40751525 40751525 C T BAHD1 Missense_Mutation p.P288S 0.40 tolerated(0.29) benign(0.001) TCGA-EE-A2GS-06 15 41146839 41146839 A T SPINT1 Missense_Mutation p.T373S 0.41 tolerated(0.19) benign(0.001) TCGA-EE-A2GS-06 15 41146840 41146840 C T SPINT1 Missense_Mutation p.T373M 0.41 deleterious(0.01) benign(0.288) TCGA-EE-A2GS-06 15 57731076 57731076 C T CGNL1 Silent p.S293S 0.59 TCGA-EE-A2GS-06 15 59406661 59406661 G A CCNB2 Missense_Mutation p.E96K 0.43 tolerated(0.67) benign(0.001) TCGA-EE-A2GS-06 15 64508805 64508805 G A CSNK1G1 Nonsense_Mutation p.R134* 0.40 TCGA-EE-A2GS-06 16 10575720 10575720 C T ATF7IP2 Missense_Mutation p.P555S 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2GS-06 16 15931898 15931898 A T MYH11 Missense_Mutation p.V71D 0.41 possibly_damaging(0.863) TCGA-EE-A2GS-06 16 18908210 18908210 G A SMG1 Missense_Mutation p.S54F 0.50 deleterious_low_confidence(0.01) benign(0.024) TCGA-EE-A2GS-06 16 23424809 23424809 G A COG7 Missense_Mutation p.L457F 0.46 tolerated(0.28) possibly_damaging(0.502) TCGA-EE-A2GS-06 16 23703508 23703508 G A ERN2 Missense_Mutation p.H797Y 0.47 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2GS-06 16 25172473 25172473 C T LCMT1 Nonsense_Mutation p.R173* 0.42 TCGA-EE-A2GS-06 16 27367137 27367137 G A IL4R Missense_Mutation p.E227K 0.30 tolerated(0.66) benign(0.011) TCGA-EE-A2GS-06 16 2811981 2811981 C T SRRM2 Silent p.S484S 0.31 TCGA-EE-A2GS-06 16 31336029 31336029 G A ITGAM Missense_Mutation p.G740R 0.33 tolerated(0.07) probably_damaging(1) TCGA-EE-A2GS-06 16 47699866 47699866 C T PHKB Intron 0.48 TCGA-EE-A2GS-06 16 58314215 58314215 C T PRSS54 Silent p.R367R 0.47 TCGA-EE-A2GS-06 16 66975424 66975424 C T CES2 Missense_Mutation p.P375S 0.38 tolerated(0.18) benign(0.079) TCGA-EE-A2GS-06 16 72142723 72142723 C T DHX38 Missense_Mutation p.R1094C 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 16 72992789 72992789 G A ZFHX3 Missense_Mutation p.P419L 0.40 probably_damaging(0.981) TCGA-EE-A2GS-06 16 76572100 76572100 C T CNTNAP4 Missense_Mutation p.A955V 0.42 tolerated(0.19) benign(0.226) TCGA-EE-A2GS-06 16 87717753 87717753 C T JPH3 Missense_Mutation p.S389F 0.46 deleterious(0) possibly_damaging(0.862) TCGA-EE-A2GS-06 16 9857021 9857021 G A GRIN2A Silent p.I1460I 0.22 TCGA-EE-A2GS-06 16 9857890 9857890 G A GRIN2A Missense_Mutation p.P1171S 0.44 tolerated(0.38) benign(0.094) TCGA-EE-A2GS-06 16 9862791 9862791 C T GRIN2A Missense_Mutation p.E838K 0.48 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 17 12649307 12649307 C T MYOCD Missense_Mutation p.P348L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 17 18653121 18653121 G A FBXW10 Missense_Mutation p.D253N 0.30 tolerated(0.49) benign(0.009) TCGA-EE-A2GS-06 17 19319073 19319073 G A RNF112 Missense_Mutation p.R494Q 0.35 tolerated(0.21) benign(0.367) TCGA-EE-A2GS-06 17 25970616 25970616 C T LGALS9 Silent p.F170F 0.34 TCGA-EE-A2GS-06 17 25974412 25974412 G A LGALS9 Missense_Mutation p.R292Q 0.41 deleterious(0.05) possibly_damaging(0.893) TCGA-EE-A2GS-06 17 29261253 29261253 C T ADAP2 Silent p.L150L 0.41 TCGA-EE-A2GS-06 17 3301279 3301279 G A OR1E1 Silent p.L142L 0.36 TCGA-EE-A2GS-06 17 34072568 34072568 G A GAS2L2 Missense_Mutation p.P650S 0.46 tolerated(0.74) benign(0.116) TCGA-EE-A2GS-06 17 38142870 38142870 G A PSMD3 Missense_Mutation p.G152R 0.40 tolerated(0.1) benign(0.023) TCGA-EE-A2GS-06 17 39316979 39316979 G A KRTAP4-4 5'UTR 0.42 TCGA-EE-A2GS-06 17 39394295 39394295 C T KRTAP9-3 3'Flank 0.29 TCGA-EE-A2GS-06 17 39406235 39406235 C A KRTAP9-4 Missense_Mutation p.S88Y 0.38 deleterious(0.01) unknown(0) TCGA-EE-A2GS-06 17 40260089 40260089 T A DHX58 Missense_Mutation p.Q239L 0.42 tolerated(0.17) benign(0.006) TCGA-EE-A2GS-06 17 40722080 40722080 A G MLX Missense_Mutation p.N240S 0.42 tolerated(0.36) benign(0.009) TCGA-EE-A2GS-06 17 54517700 54517700 T C ANKFN1 Missense_Mutation p.M311T 0.46 tolerated(0.45) benign(0.001) TCGA-EE-A2GS-06 17 61621669 61621669 G A KCNH6 Missense_Mutation p.E801K 0.36 tolerated_low_confidence(0.26) benign(0) TCGA-EE-A2GS-06 17 62553786 62553786 G A SMURF2 Silent p.F457F 0.39 TCGA-EE-A2GS-06 17 6690819 6690819 G A FBXO39 3'UTR 0.48 TCGA-EE-A2GS-06 17 67109458 67109458 G A ABCA6 Missense_Mutation p.S649F 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 17 68129545 68129545 C T KCNJ16 3'UTR 0.43 TCGA-EE-A2GS-06 17 7467989 7467989 C T SENP3 Missense_Mutation p.P255S 0.24 tolerated(0.08) benign(0.009) TCGA-EE-A2GS-06 17 7663240 7663240 C T DNAH2 Silent p.P923P 0.40 TCGA-EE-A2GS-06 17 80579641 80579641 G A WDR45B Silent p.S154S 0.25 TCGA-EE-A2GS-06 17 8108286 8108286 G A AURKB Missense_Mutation p.S313L 0.35 tolerated(0.15) benign(0.019) TCGA-EE-A2GS-06 17 8791773 8791773 T A PIK3R5 Missense_Mutation p.E444V 0.53 tolerated(0.18) possibly_damaging(0.751) TCGA-EE-A2GS-06 18 14534957 14534957 A C POTEC Missense_Mutation p.V287G 0.16 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GS-06 18 19997405 19997405 C T CTAGE1 Missense_Mutation p.E124K 0.39 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2GS-06 18 2688675 2688675 C T SMCHD1 Missense_Mutation p.S268F 0.64 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 18 29340161 29340161 G A SLC25A52 Missense_Mutation p.T165I 0.44 tolerated(0.13) benign(0.323) TCGA-EE-A2GS-06 18 30093384 30093384 C T WBP11P1 RNA 0.33 TCGA-EE-A2GS-06 18 30093385 30093385 C T WBP11P1 RNA 0.35 TCGA-EE-A2GS-06 18 31537311 31537311 C T NOL4 Missense_Mutation p.M469I 0.36 deleterious(0.01) benign(0.043) TCGA-EE-A2GS-06 18 40850433 40850433 C A SYT4 Missense_Mutation p.R384L 0.43 deleterious(0) benign(0.075) TCGA-EE-A2GS-06 18 43577766 43577766 G A PSTPIP2 Silent p.T197T 0.37 TCGA-EE-A2GS-06 18 44554577 44554577 C T TCEB3C Missense_Mutation p.R546Q 0.07 deleterious(0) probably_damaging(0.953) TCGA-EE-A2GS-06 18 47390533 47390533 C T MYO5B Missense_Mutation p.R1274Q 0.38 tolerated(0.64) benign(0.001) TCGA-EE-A2GS-06 18 48335729 48335729 G A MRO Intron 0.39 TCGA-EE-A2GS-06 18 5969478 5969478 G A L3MBTL4 Missense_Mutation p.P519S 0.45 tolerated(0.71) possibly_damaging(0.449) TCGA-EE-A2GS-06 18 64172126 64172126 C T CDH19 Missense_Mutation p.D748N 0.42 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A2GS-06 19 15072753 15072753 C T SLC1A6 Intron 0.42 TCGA-EE-A2GS-06 19 15752390 15752390 G A CYP4F3 Silent p.P55P 0.41 TCGA-EE-A2GS-06 19 16318952 16318952 C T AP1M1 Silent p.I130I 0.28 TCGA-EE-A2GS-06 19 16590073 16590073 C T CALR3 Missense_Mutation p.E342K 0.34 tolerated(0.69) probably_damaging(0.998) TCGA-EE-A2GS-06 19 22193612 22193612 G A ZNF208 5'UTR 0.50 TCGA-EE-A2GS-06 19 22362962 22362962 G A ZNF676 Silent p.I519I 0.39 TCGA-EE-A2GS-06 19 22363491 22363491 C T ZNF676 Missense_Mutation p.G343E 0.25 deleterious(0) possibly_damaging(0.891) TCGA-EE-A2GS-06 19 2243473 2243473 C T SF3A2 Missense_Mutation p.S19F 0.47 tolerated_low_confidence(0.28) benign(0.032) TCGA-EE-A2GS-06 19 30934835 30934835 C T ZNF536 Silent p.D122D 0.24 TCGA-EE-A2GS-06 19 36333452 36333452 C T NPHS1 Missense_Mutation p.G779R 0.19 deleterious(0) probably_damaging(0.966) TCGA-EE-A2GS-06 19 39804582 39804582 G A LRFN1 Silent p.S465S 0.09 TCGA-EE-A2GS-06 19 40581187 40581187 G A ZNF780A Missense_Mutation p.P389S 0.23 deleterious(0.01) benign(0.231) TCGA-EE-A2GS-06 19 41086326 41086326 C T SHKBP1 Missense_Mutation p.P166L 0.19 tolerated(0.06) benign(0.013) TCGA-EE-A2GS-06 19 41626256 41626256 C T CYP2F1 Silent p.I113I 0.73 TCGA-EE-A2GS-06 19 47570536 47570536 G A ZC3H4 Missense_Mutation p.P997S 0.20 unknown(0) TCGA-EE-A2GS-06 19 49335008 49335008 G A HSD17B14 Missense_Mutation p.P96S 0.71 tolerated(0.47) benign(0.006) TCGA-EE-A2GS-06 19 52825260 52825260 C T ZNF480 Missense_Mutation p.H253Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GS-06 19 53303922 53303922 G A ZNF28 Silent p.F392F 0.19 TCGA-EE-A2GS-06 19 54140083 54140083 C T DPRX Silent p.V139V 0.24 TCGA-EE-A2GS-06 19 55179188 55179188 G A LILRB4 Missense_Mutation p.E382K 0.14 tolerated(0.2) benign(0.176) TCGA-EE-A2GS-06 19 58083326 58083326 G A ZNF416 3'UTR 0.73 TCGA-EE-A2GS-06 19 6734246 6734246 G A GPR108 Silent p.S149S 0.47 TCGA-EE-A2GS-06 19 8654804 8654804 C T ADAMTS10 Silent p.G623G 0.30 TCGA-EE-A2GS-06 19 9063144 9063144 G A MUC16 Missense_Mutation p.S8101L 0.36 unknown(0) TCGA-EE-A2GS-06 1 100587028 100587028 G A SASS6 Missense_Mutation p.P130L 0.45 deleterious(0.02) possibly_damaging(0.864) TCGA-EE-A2GS-06 1 104160086 104160086 C T AMY2A Silent p.F8F 0.31 TCGA-EE-A2GS-06 1 110033912 110033912 C T ATXN7L2 Missense_Mutation p.P576L 0.45 tolerated_low_confidence(0.21) benign(0.126) TCGA-EE-A2GS-06 1 111854982 111854982 C T CHIA Missense_Mutation p.L76F 0.45 tolerated(0.13) benign(0.097) TCGA-EE-A2GS-06 1 1120496 1120496 C T TTLL10 Intron 0.35 TCGA-EE-A2GS-06 1 117311171 117311171 G A CD2 Silent p.Q274Q 0.40 TCGA-EE-A2GS-06 1 117560848 117560848 C T CD101 Silent p.S561S 0.48 TCGA-EE-A2GS-06 1 12371558 12371558 C T VPS13D Missense_Mutation p.S2233F 0.49 probably_damaging(0.986) TCGA-EE-A2GS-06 1 1290450 1290450 C T MXRA8 Silent p.V187V 0.75 TCGA-EE-A2GS-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.13 tolerated(0.14) benign(0.015) TCGA-EE-A2GS-06 1 12939636 12939636 C T PRAMEF4 Missense_Mutation p.G389E 0.41 tolerated(0.2) probably_damaging(0.992) TCGA-EE-A2GS-06 1 14105501 14105501 A C PRDM2 Missense_Mutation p.N404T 0.36 probably_damaging(0.999) TCGA-EE-A2GS-06 1 14105503 14105503 C T PRDM2 Missense_Mutation p.R405W 0.38 probably_damaging(1) TCGA-EE-A2GS-06 1 150812125 150812125 T C ARNT Missense_Mutation p.N93S 0.78 deleterious(0.02) possibly_damaging(0.626) TCGA-EE-A2GS-06 1 153955325 153955325 G A RAB13 Intron 0.60 TCGA-EE-A2GS-06 1 155039319 155039319 A T EFNA4 Missense_Mutation p.Y76F 0.56 tolerated(0.15) benign(0.02) TCGA-EE-A2GS-06 1 155039320 155039320 C T EFNA4 Silent p.Y76Y 0.56 TCGA-EE-A2GS-06 1 155239385 155239385 G A CLK2 Missense_Mutation p.S98F 0.56 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A2GS-06 1 155450034 155450034 G A ASH1L Missense_Mutation p.S876F 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2GS-06 1 155450917 155450917 G A ASH1L Missense_Mutation p.P582S 0.26 tolerated_low_confidence(0.42) benign(0.006) TCGA-EE-A2GS-06 1 155730261 155730261 G A GON4L Missense_Mutation p.P1695S 0.23 deleterious(0.01) benign(0.192) TCGA-EE-A2GS-06 1 157567718 157567718 G A FCRL4 Missense_Mutation p.S6F 0.53 deleterious(0.04) benign(0.003) TCGA-EE-A2GS-06 1 158369042 158369042 G A OR10T2 Missense_Mutation p.S72F 0.61 deleterious(0) possibly_damaging(0.534) TCGA-EE-A2GS-06 1 15901252 15901252 C T AGMAT Missense_Mutation p.G329R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 1 159505762 159505762 G A OR10J5 Silent p.F12F 0.27 TCGA-EE-A2GS-06 1 160053979 160053979 G A KCNJ9 Silent p.V53V 0.29 TCGA-EE-A2GS-06 1 160389254 160389254 G C VANGL2 Missense_Mutation p.A219P 0.60 deleterious(0) probably_damaging(0.964) TCGA-EE-A2GS-06 1 160535385 160535385 C T CD84 Missense_Mutation p.G66E 0.57 tolerated(0.11) benign(0.061) TCGA-EE-A2GS-06 1 161092179 161092179 G A DEDD Missense_Mutation p.R239W 0.50 deleterious(0.02) benign(0.038) TCGA-EE-A2GS-06 1 161092180 161092180 G C DEDD Silent p.S238S 0.51 TCGA-EE-A2GS-06 1 161092181 161092181 G T DEDD Missense_Mutation p.S238Y 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 1 162536125 162536125 C T UAP1 Silent p.A89A 0.22 TCGA-EE-A2GS-06 1 16946364 16946364 G A RP5-1182A14.5 3'Flank 0.18 TCGA-EE-A2GS-06 1 176526002 176526002 G A PAPPA2 Missense_Mutation p.E182K 0.63 tolerated_low_confidence(0.35) benign(0.001) TCGA-EE-A2GS-06 1 179783102 179783102 C T FAM163A Silent p.H94H 0.58 TCGA-EE-A2GS-06 1 196706034 196706034 G A CFH Missense_Mutation p.G832R 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 1 201104664 201104664 G A TMEM9 3'UTR 0.60 TCGA-EE-A2GS-06 1 203020942 203020942 A T PPFIA4 Silent p.T13T 0.46 TCGA-EE-A2GS-06 1 20517684 20517684 G A UBXN10 Silent p.R210R 0.41 TCGA-EE-A2GS-06 1 205554093 205554093 G A MFSD4 Missense_Mutation p.V317I 0.59 tolerated(0.37) benign(0.277) TCGA-EE-A2GS-06 1 207287489 207287489 G A C4BPA Missense_Mutation p.D63N 0.31 tolerated(1) benign(0.001) TCGA-EE-A2GS-06 1 227279642 227279642 C T CDC42BPA Missense_Mutation p.R767Q 0.54 deleterious(0.03) possibly_damaging(0.815) TCGA-EE-A2GS-06 1 228494759 228494759 G A OBSCN Silent p.Q4985Q 0.30 TCGA-EE-A2GS-06 1 235605135 235605135 G A TBCE Missense_Mutation p.G426D 0.61 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GS-06 1 237798220 237798220 G A RYR2 Silent p.L2240L 0.26 TCGA-EE-A2GS-06 1 24202038 24202038 C T CNR2 Missense_Mutation p.D24N 0.44 tolerated(1) benign(0.002) TCGA-EE-A2GS-06 1 247978792 247978792 G A OR14A16 Silent p.I80I 0.51 TCGA-EE-A2GS-06 1 248004495 248004495 C T OR11L1 Missense_Mutation p.R235K 0.36 tolerated(0.54) benign(0.007) TCGA-EE-A2GS-06 1 40771413 40771413 C T COL9A2 Missense_Mutation p.G361R 0.30 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GS-06 1 43786956 43786956 C T TIE1 Missense_Mutation p.L1042F 0.42 deleterious(0) probably_damaging(0.929) TCGA-EE-A2GS-06 1 47564905 47564905 G A CYP4Z1 Missense_Mutation p.R339K 0.51 tolerated(0.26) benign(0) TCGA-EE-A2GS-06 1 47685844 47685844 G A TAL1 Missense_Mutation p.P182S 0.44 tolerated(0.11) benign(0.027) TCGA-EE-A2GS-06 1 52991400 52991400 G A ZCCHC11 Missense_Mutation p.P185S 0.35 tolerated_low_confidence(0.12) benign(0.005) TCGA-EE-A2GS-06 1 53975537 53975537 G A GLIS1 Silent p.L508L 0.36 TCGA-EE-A2GS-06 1 54418140 54418140 A G LRRC42 Silent p.R156R 0.32 TCGA-EE-A2GS-06 1 55474160 55474160 G A BSND Silent p.K274K 0.40 TCGA-EE-A2GS-06 1 8416175 8416175 G A RERE Missense_Mutation p.R1491C 0.43 unknown(0) TCGA-EE-A2GS-06 1 92446853 92446853 A G BRDT Silent p.E593E 0.42 TCGA-EE-A2GS-06 20 13098186 13098186 C T SPTLC3 Silent p.I322I 0.35 TCGA-EE-A2GS-06 20 13134715 13134715 G A SPTLC3 Missense_Mutation p.G449R 0.46 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GS-06 20 18794861 18794861 C T SCP2D1 Silent p.F134F 0.39 TCGA-EE-A2GS-06 20 34022048 34022048 C T GDF5 Missense_Mutation p.G389S 0.45 deleterious(0) benign(0.028) TCGA-EE-A2GS-06 20 35467644 35467644 G A SOGA1 Silent p.I296I 0.38 TCGA-EE-A2GS-06 20 40079728 40079728 G A CHD6 Missense_Mutation p.P1181S 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2GS-06 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.66 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 20 42806598 42806598 G A JPH2 Intron 0.33 TCGA-EE-A2GS-06 20 43723508 43723508 G A KCNS1 3'UTR 0.39 TCGA-EE-A2GS-06 20 43836294 43836294 C T SEMG1 Missense_Mutation p.S119L 0.51 tolerated(0.2) benign(0.412) TCGA-EE-A2GS-06 20 55100851 55100851 T A GCNT7 5'UTR 0.37 TCGA-EE-A2GS-06 20 55777679 55777679 C T BMP7 Silent p.R204R 0.40 TCGA-EE-A2GS-06 20 56094368 56094368 G A CTCFL Missense_Mutation p.R274C 0.31 deleterious(0) probably_damaging(0.965) TCGA-EE-A2GS-06 20 57829779 57829779 G A ZNF831 Missense_Mutation p.R1672Q 0.41 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GS-06 21 10906835 10906835 G A TPTE 3'UTR 0.32 TCGA-EE-A2GS-06 21 33057751 33057751 G A SCAF4 Silent p.S752S 0.40 TCGA-EE-A2GS-06 21 35239534 35239534 C T ITSN1 Intron 0.37 TCGA-EE-A2GS-06 21 39580344 39580344 C T DSCR10 RNA 0.44 TCGA-EE-A2GS-06 21 41450636 41450636 G A DSCAM Silent p.F1563F 0.33 TCGA-EE-A2GS-06 21 44151975 44151975 G A PDE9A Missense_Mutation p.E120K 0.33 tolerated(0.76) benign(0.001) TCGA-EE-A2GS-06 21 46888517 46888517 C G COL18A1 Silent p.P336P 0.36 TCGA-EE-A2GS-06 22 30887961 30887961 C T SEC14L4 Splice_Site p.X258_splice 0.39 TCGA-EE-A2GS-06 22 35947777 35947777 G C RASD2 Missense_Mutation p.A167P 0.40 tolerated(0.13) benign(0.23) TCGA-EE-A2GS-06 22 36863860 36863860 C A TXN2 Silent p.L164L 0.52 TCGA-EE-A2GS-06 22 37325507 37325507 G A CSF2RB Nonsense_Mutation p.W152* 0.49 TCGA-EE-A2GS-06 22 37892455 37892455 C T CARD10 Splice_Site p.X687_splice 0.41 TCGA-EE-A2GS-06 22 37912264 37912264 C T CARD10 Missense_Mutation p.E139K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 22 40521847 40521847 C T TNRC6B Missense_Mutation p.S9L 0.35 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A2GS-06 22 41551054 41551054 C T EP300 Silent p.Y1066Y 0.42 TCGA-EE-A2GS-06 22 50563824 50563824 C T MOV10L1 Silent p.L525L 0.38 TCGA-EE-A2GS-06 2 103148791 103148791 G A SLC9A4 Missense_Mutation p.D681N 0.42 tolerated(0.21) benign(0.002) TCGA-EE-A2GS-06 2 107052587 107052587 G A RGPD3 Nonsense_Mutation p.Q584* 0.34 TCGA-EE-A2GS-06 2 119727775 119727775 C T MARCO Silent p.S95S 0.53 TCGA-EE-A2GS-06 2 128186044 128186044 T G PROC Missense_Mutation p.L303R 0.48 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GS-06 2 137917931 137917931 G A THSD7B Silent p.G506G 0.33 TCGA-EE-A2GS-06 2 141773412 141773412 C T LRP1B Missense_Mutation p.M681I 0.34 benign(0.072) TCGA-EE-A2GS-06 2 162813628 162813628 G A SLC4A10 Missense_Mutation p.E891K 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GS-06 2 171356153 171356153 C T MYO3B Intron 0.32 TCGA-EE-A2GS-06 2 171702538 171702538 G A GAD1 Missense_Mutation p.D323N 0.44 deleterious(0.04) benign(0.034) TCGA-EE-A2GS-06 2 172953072 172953072 C T DLX1 3'UTR 0.43 TCGA-EE-A2GS-06 2 175618462 175618462 C T CHRNA1 Missense_Mutation p.D208N 0.33 tolerated(0.17) possibly_damaging(0.905) TCGA-EE-A2GS-06 2 175962221 175962221 G A ATF2 Missense_Mutation p.S310F 0.43 deleterious(0.01) benign(0.075) TCGA-EE-A2GS-06 2 179433574 179433574 G A TTN Missense_Mutation p.T25762I 0.52 TCGA-EE-A2GS-06 2 179458480 179458480 A T TTN Missense_Mutation p.I19516N 0.46 TCGA-EE-A2GS-06 2 179615521 179615521 T G TTN Intron 0.44 TCGA-EE-A2GS-06 2 183104853 183104853 C T PDE1A Missense_Mutation p.G128R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 2 201438006 201438006 C T SGOL2 Silent p.S979S 0.40 TCGA-EE-A2GS-06 2 21238130 21238130 C T APOB Missense_Mutation p.E1171K 0.40 benign(0.057) TCGA-EE-A2GS-06 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.45 tolerated(0.35) probably_damaging(0.947) TCGA-EE-A2GS-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.47 deleterious(0) probably_damaging(0.954) TCGA-EE-A2GS-06 2 220044464 220044464 C T FAM134A Missense_Mutation p.P133L 0.38 tolerated(0.25) benign(0.023) TCGA-EE-A2GS-06 2 228884669 228884669 G A SPHKAP Missense_Mutation p.P301S 0.46 tolerated(0.22) benign(0.009) TCGA-EE-A2GS-06 2 230924038 230924038 C T SLC16A14 Missense_Mutation p.D11N 0.43 deleterious_low_confidence(0.01) benign(0.411) TCGA-EE-A2GS-06 2 231265558 231265558 C T SP140L Intron 0.30 TCGA-EE-A2GS-06 2 237272552 237272552 C T IQCA1 Silent p.G580G 0.37 TCGA-EE-A2GS-06 2 237272553 237272553 C T IQCA1 Missense_Mutation p.G580E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 2 237396737 237396737 T C IQCA1 Missense_Mutation p.K185R 0.36 tolerated(0.71) benign(0.011) TCGA-EE-A2GS-06 2 44209439 44209439 C T LRPPRC Missense_Mutation p.R95Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 2 47606944 47606944 G A EPCAM Missense_Mutation p.D232N 0.38 tolerated(0.66) benign(0.004) TCGA-EE-A2GS-06 2 74842097 74842097 G A M1AP Silent p.S140S 0.42 TCGA-EE-A2GS-06 2 90211955 90211955 C T IGKV3D-11 Intron 0.86 TCGA-EE-A2GS-06 3 101383815 101383815 A G ZBTB11 Missense_Mutation p.V539A 0.43 tolerated(0.09) benign(0.001) TCGA-EE-A2GS-06 3 108541758 108541758 C T TRAT1 5'UTR 0.35 TCGA-EE-A2GS-06 3 11061952 11061952 C T SLC6A1 Silent p.S175S 0.47 TCGA-EE-A2GS-06 3 111312403 111312403 G A ZBED2 Missense_Mutation p.H216Y 0.38 deleterious_low_confidence(0) benign(0.08) TCGA-EE-A2GS-06 3 111432890 111432890 C T PLCXD2 Missense_Mutation p.H261Y 0.37 tolerated(0.31) probably_damaging(0.997) TCGA-EE-A2GS-06 3 111996575 111996575 G A SLC9C1 Missense_Mutation p.P151S 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 3 122354972 122354972 G A PARP15 3'UTR 0.31 TCGA-EE-A2GS-06 3 126220660 126220660 A G UROC1 Missense_Mutation p.F345S 0.34 tolerated(0.39) benign(0.001) TCGA-EE-A2GS-06 3 130345347 130345347 G A COL6A6 Missense_Mutation p.G1633R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 3 133099648 133099648 G A TMEM108 Missense_Mutation p.D365N 0.45 tolerated(0.17) benign(0.001) TCGA-EE-A2GS-06 3 14905670 14905670 C T FGD5 Missense_Mutation p.S854L 0.32 tolerated(0.1) benign(0.009) TCGA-EE-A2GS-06 3 169485997 169485997 G A ACTRT3 Silent p.N114N 0.80 TCGA-EE-A2GS-06 3 169540517 169540517 G A LRRIQ4 Missense_Mutation p.E270K 0.88 tolerated(0.16) benign(0.265) TCGA-EE-A2GS-06 3 169540572 169540572 G A LRRIQ4 Missense_Mutation p.G288E 0.76 tolerated(0.1) benign(0.012) TCGA-EE-A2GS-06 3 19559536 19559536 C T KCNH8 Silent p.T863T 0.53 TCGA-EE-A2GS-06 3 21478632 21478632 A C ZNF385D Missense_Mutation p.V168G 0.38 tolerated(0.34) benign(0.007) TCGA-EE-A2GS-06 3 23952324 23952324 G A NKIRAS1 Silent p.L24L 0.46 TCGA-EE-A2GS-06 3 2787269 2787269 G A CNTN4 Silent p.G82G 0.40 TCGA-EE-A2GS-06 3 38620851 38620851 C T SCN5A Missense_Mutation p.E1122K 0.45 tolerated(0.37) benign(0.068) TCGA-EE-A2GS-06 3 38968362 38968362 G A SCN11A Silent p.F183F 0.35 TCGA-EE-A2GS-06 3 38991749 38991749 C T SCN11A Silent p.K35K 0.44 TCGA-EE-A2GS-06 3 49083867 49083867 A T QRICH1 Nonsense_Mutation p.C554* 0.43 TCGA-EE-A2GS-06 3 52428618 52428618 C T DNAH1 Silent p.S3588S 0.30 TCGA-EE-A2GS-06 3 52547918 52547918 G A STAB1 Missense_Mutation p.G1123E 0.33 tolerated(0.19) benign(0.033) TCGA-EE-A2GS-06 3 56330286 56330286 G A ERC2 Missense_Mutation p.L279F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 3 58517093 58517093 C T ACOX2 Missense_Mutation p.G235E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 3 58552466 58552466 G A FAM107A Intron 0.44 TCGA-EE-A2GS-06 3 58855130 58855130 G A C3orf67 Silent p.A188A 0.51 TCGA-EE-A2GS-06 4 100057678 100057678 C T ADH4 Missense_Mutation p.R174K 0.37 tolerated(1) benign(0.03) TCGA-EE-A2GS-06 4 126373578 126373578 C T FAT4 Missense_Mutation p.H3803Y 0.41 benign(0.006) TCGA-EE-A2GS-06 4 138442574 138442574 G A PCDH18 Missense_Mutation p.S1006L 0.51 deleterious(0) benign(0.306) TCGA-EE-A2GS-06 4 144457813 144457813 C T SMARCA5 Missense_Mutation p.P493S 0.45 tolerated(0.14) benign(0.006) TCGA-EE-A2GS-06 4 145636452 145636452 G A HHIP Silent p.G516G 0.40 TCGA-EE-A2GS-06 4 155670292 155670292 C T LRAT 3'UTR 0.39 TCGA-EE-A2GS-06 4 3210615 3210615 C G HTT Missense_Mutation p.L2090V 0.44 benign(0.04) TCGA-EE-A2GS-06 4 55970857 55970857 C T KDR Missense_Mutation p.R647K 0.55 tolerated(0.49) benign(0.004) TCGA-EE-A2GS-06 4 56325372 56325372 C T CLOCK Missense_Mutation p.E206K 0.40 deleterious(0.04) benign(0.077) TCGA-EE-A2GS-06 4 74283809 74283809 C T ALB Missense_Mutation p.S478F 0.31 tolerated(0.08) benign(0.145) TCGA-EE-A2GS-06 4 75312457 75312457 G A AREG Missense_Mutation p.E90K 0.41 deleterious(0.01) possibly_damaging(0.81) TCGA-EE-A2GS-06 5 118969986 118969986 C T FAM170A Silent p.L181L 0.43 TCGA-EE-A2GS-06 5 13714710 13714710 C T DNAH5 Missense_Mutation p.S4310N 0.42 possibly_damaging(0.517) TCGA-EE-A2GS-06 5 13770902 13770902 G A DNAH5 Silent p.F3187F 0.27 TCGA-EE-A2GS-06 5 138209494 138209494 C T LRRTM2 Nonsense_Mutation p.W252* 0.41 TCGA-EE-A2GS-06 5 140202658 140202658 C T PCDHA5 Missense_Mutation p.S433L 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.596) TCGA-EE-A2GS-06 5 140242880 140242880 C T AC005609.1 Missense_Mutation p.M32I 0.36 tolerated_low_confidence(0.14) benign(0.043) TCGA-EE-A2GS-06 5 140256358 140256358 C T PCDHA12 Missense_Mutation p.S434L 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.492) TCGA-EE-A2GS-06 5 140433084 140433084 C T PCDHB1 Missense_Mutation p.P677S 0.46 tolerated(0.26) benign(0.002) TCGA-EE-A2GS-06 5 140480495 140480495 G A PCDHB3 Missense_Mutation p.E88K 0.40 deleterious_low_confidence(0.03) benign(0.081) TCGA-EE-A2GS-06 5 140751468 140751468 T G PCDHGB3 Missense_Mutation p.S503A 0.48 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2GS-06 5 140751744 140751744 G A PCDHGB3 Missense_Mutation p.D595N 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 5 140810729 140810729 G A PCDHGA12 Missense_Mutation p.E135K 0.28 tolerated_low_confidence(0.8) benign(0.016) TCGA-EE-A2GS-06 5 142689668 142689668 G A NR3C1 Silent p.L489L 0.50 TCGA-EE-A2GS-06 5 147785841 147785841 A T FBXO38 Missense_Mutation p.Y251F 0.42 tolerated(0.11) probably_damaging(0.969) TCGA-EE-A2GS-06 5 150947900 150947900 G A FAT2 Missense_Mutation p.P198L 0.39 probably_damaging(1) TCGA-EE-A2GS-06 5 169423153 169423153 G A DOCK2 Silent p.T1019T 0.38 TCGA-EE-A2GS-06 5 178541288 178541288 C T ADAMTS2 Silent p.R1072R 0.50 TCGA-EE-A2GS-06 5 180326349 180326349 G A BTNL8 Silent p.K13K 0.43 TCGA-EE-A2GS-06 5 194850 194850 G A LRRC14B Silent p.L309L 0.43 TCGA-EE-A2GS-06 5 35065416 35065416 C T PRLR Silent p.K548K 0.57 TCGA-EE-A2GS-06 5 41158798 41158798 G A C6 Missense_Mutation p.P649L 0.48 tolerated(0.39) benign(0.039) TCGA-EE-A2GS-06 5 50687119 50687119 G A ISL1 Silent p.G259G 0.41 TCGA-EE-A2GS-06 5 57750791 57750791 A C PLK2 Missense_Mutation p.W605G 0.37 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GS-06 5 89979464 89979464 C T GPR98 Missense_Mutation p.P1909L 0.41 probably_damaging(0.981) TCGA-EE-A2GS-06 6 106552701 106552701 A T PRDM1 Silent p.T222T 0.38 TCGA-EE-A2GS-06 6 117250008 117250008 C T RFX6 Missense_Mutation p.R829C 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2GS-06 6 13206120 13206120 G A PHACTR1 Missense_Mutation p.M246I 0.34 tolerated(0.08) benign(0) TCGA-EE-A2GS-06 6 139564297 139564297 G A TXLNB Missense_Mutation p.S474F 0.80 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2GS-06 6 146480484 146480484 G A GRM1 Missense_Mutation p.G234E 0.68 tolerated(0.08) possibly_damaging(0.802) TCGA-EE-A2GS-06 6 146480485 146480485 G A GRM1 Silent p.G234G 0.69 TCGA-EE-A2GS-06 6 160998268 160998268 G A LPA Nonsense_Mutation p.R1511* 0.80 TCGA-EE-A2GS-06 6 161152796 161152796 G A PLG Silent p.G486G 0.78 TCGA-EE-A2GS-06 6 21595096 21595096 G A SOX4 Missense_Mutation p.E111K 0.71 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GS-06 6 27879182 27879182 C T OR2B2 Missense_Mutation p.A306T 0.36 tolerated(0.35) benign(0.009) TCGA-EE-A2GS-06 6 30951923 30951923 A C MUC21 Intron 0.30 TCGA-EE-A2GS-06 6 31686890 31686890 G A LY6G6C Missense_Mutation p.L121F 0.30 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A2GS-06 6 32065114 32065114 A C TNXB Missense_Mutation p.D172E 0.55 probably_damaging(0.971) TCGA-EE-A2GS-06 6 32085370 32085370 G A ATF6B Missense_Mutation p.S509F 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 6 33246133 33246133 G A B3GALT4 Missense_Mutation p.G313S 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 6 38791338 38791338 G A DNAH8 Missense_Mutation p.E1024K 0.63 benign(0.021) TCGA-EE-A2GS-06 6 39895171 39895171 G A MOCS1 Silent p.F49F 0.65 TCGA-EE-A2GS-06 6 47682091 47682091 C T GPR115 Silent p.I370I 0.57 TCGA-EE-A2GS-06 6 54804573 54804573 C T FAM83B Silent p.S268S 0.45 TCGA-EE-A2GS-06 6 55639005 55639005 C T BMP5 Missense_Mutation p.G290E 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2GS-06 6 64404537 64404537 C T PHF3 Missense_Mutation p.P855S 0.37 tolerated(0.07) probably_damaging(0.995) TCGA-EE-A2GS-06 6 71238106 71238106 T G FAM135A Missense_Mutation p.D1242E 0.41 tolerated(0.97) benign(0.005) TCGA-EE-A2GS-06 6 74073478 74073478 C T KHDC3L Silent p.L183L 0.52 TCGA-EE-A2GS-06 6 85446847 85446847 C T TBX18 Silent p.V460V 0.46 TCGA-EE-A2GS-06 7 100549481 100549481 G A MUC3A Missense_Mutation p.G21E 0.31 deleterious(0) unknown(0) TCGA-EE-A2GS-06 7 116436101 116436101 C T MET Missense_Mutation p.P1384S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 7 119914791 119914791 G A KCND2 Silent p.R35R 0.34 TCGA-EE-A2GS-06 7 120387853 120387853 G A KCND2 Missense_Mutation p.D612N 0.51 tolerated_low_confidence(0.37) benign(0.001) TCGA-EE-A2GS-06 7 126544728 126544728 C A GRM8 Missense_Mutation p.C246F 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GS-06 7 128356957 128356957 C T FAM71F1 Missense_Mutation p.P114S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.88 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GS-06 7 141672809 141672809 C T TAS2R38 Missense_Mutation p.M227I 0.91 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GS-06 7 141802440 141802440 G A MGAM Silent p.G1762G 0.58 TCGA-EE-A2GS-06 7 142223937 142223937 G A TRBV11-1 Missense_Mutation p.S77L 0.54 deleterious(0.02) benign(0.33) TCGA-EE-A2GS-06 7 142575028 142575028 C T TRPV6 Silent p.Q118Q 0.89 TCGA-EE-A2GS-06 7 143633082 143633082 G A OR2F2 Missense_Mutation p.G253S 0.88 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A2GS-06 7 17833866 17833866 G A SNX13 Missense_Mutation p.R893C 0.37 tolerated(0.17) benign(0.277) TCGA-EE-A2GS-06 7 20418902 20418902 G C ITGB8 Missense_Mutation p.R206T 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2GS-06 7 30962230 30962230 G A AQP1 Missense_Mutation p.V201M 0.48 deleterious(0.03) possibly_damaging(0.619) TCGA-EE-A2GS-06 7 37780780 37780780 T C GPR141 Missense_Mutation p.V262A 0.44 tolerated(0.2) benign(0.006) TCGA-EE-A2GS-06 7 39491250 39491250 C T POU6F2 Missense_Mutation p.S451F 0.35 deleterious(0) unknown(0) TCGA-EE-A2GS-06 7 72658024 72658024 C T GTF2IRD2P1 RNA 0.36 TCGA-EE-A2GS-06 7 73634332 73634332 C T LAT2 Missense_Mutation p.P74L 0.40 tolerated(0.05) benign(0.015) TCGA-EE-A2GS-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.48 unknown(0) TCGA-EE-A2GS-06 7 82582113 82582113 C T PCLO Missense_Mutation p.G2719E 0.52 unknown(0) TCGA-EE-A2GS-06 7 94030901 94030901 G A COL1A2 Missense_Mutation p.G83E 0.38 unknown(0) TCGA-EE-A2GS-06 8 10159066 10159066 C T MSRA Silent p.V118V 0.73 TCGA-EE-A2GS-06 8 125551344 125551344 C T TATDN1 5'Flank 0.67 TCGA-EE-A2GS-06 8 125551345 125551345 C T TATDN1 5'Flank 0.67 TCGA-EE-A2GS-06 8 140630676 140630676 G T KCNK9 Missense_Mutation p.S317Y 0.20 tolerated(0.17) benign(0.275) TCGA-EE-A2GS-06 8 142151390 142151390 C T DENND3 Missense_Mutation p.P117L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 8 144522294 144522294 G A ZC3H3 Missense_Mutation p.S911F 0.61 deleterious(0) possibly_damaging(0.809) TCGA-EE-A2GS-06 8 145770964 145770964 G A ARHGAP39 Silent p.P730P 0.54 TCGA-EE-A2GS-06 8 25708175 25708175 G T EBF2 Missense_Mutation p.P544H 0.77 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2GS-06 8 39027493 39027493 C T ADAM32 Missense_Mutation p.R298C 0.30 tolerated(0.05) benign(0.063) TCGA-EE-A2GS-06 8 67577418 67577418 G A VCPIP1 Silent p.F592F 0.37 TCGA-EE-A2GS-06 8 6782433 6782433 G A DEFA6 Silent p.F70F 0.72 TCGA-EE-A2GS-06 8 68049808 68049808 C T CSPP1 Missense_Mutation p.P644S 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 8 69434100 69434100 G A C8orf34 Missense_Mutation p.E278K 0.38 deleterious(0.03) possibly_damaging(0.883) TCGA-EE-A2GS-06 8 77616293 77616293 G A ZFHX4 5'UTR 0.59 TCGA-EE-A2GS-06 8 77764768 77764768 G A ZFHX4 Missense_Mutation p.E1871K 0.62 possibly_damaging(0.486) TCGA-EE-A2GS-06 8 95262655 95262655 C T GEM Silent p.R258R 0.38 TCGA-EE-A2GS-06 9 117168912 117168912 G A DFNB31 Silent p.S653S 0.73 TCGA-EE-A2GS-06 9 139960001 139960001 G A SAPCD2 Silent p.R268R 0.79 TCGA-EE-A2GS-06 9 18776907 18776907 G A ADAMTSL1 Missense_Mutation p.A894T 1.00 tolerated(0.15) benign(0.002) TCGA-EE-A2GS-06 9 27212783 27212783 C T TEK Missense_Mutation p.T922M 0.76 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GS-06 9 340242 340242 C T DOCK8 Missense_Mutation p.P534S 0.76 tolerated(0.15) benign(0.002) TCGA-EE-A2GS-06 9 39888169 39888169 G A SPATA31A2 Missense_Mutation p.G386R 0.69 tolerated(0.09) probably_damaging(0.912) TCGA-EE-A2GS-06 9 5772613 5772613 C T KIAA1432 Silent p.S1222S 0.78 TCGA-EE-A2GS-06 9 84532658 84532658 G A SPATA31D5P RNA 0.70 TCGA-EE-A2GS-06 9 85607903 85607903 C T RASEF Missense_Mutation p.G653E 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 9 99691310 99691310 G A NUTM2G Missense_Mutation p.A2T 0.67 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GS-06 X 104728345 104728345 G A IL1RAPL2 Missense_Mutation p.M246I 0.41 tolerated(0.41) benign(0.026) TCGA-EE-A2GS-06 X 105178249 105178249 G A NRK Splice_Site p.X1106_splice 0.41 TCGA-EE-A2GS-06 X 106456100 106456100 C T PIH1D3 Intron 0.46 TCGA-EE-A2GS-06 X 107320491 107320491 G A VSIG1 Silent p.L384L 0.45 TCGA-EE-A2GS-06 X 109931860 109931860 C T CHRDL1 Missense_Mutation p.G317E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2GS-06 X 111090435 111090435 T C TRPC5 Missense_Mutation p.N536S 0.41 deleterious(0) probably_damaging(0.94) TCGA-EE-A2GS-06 X 112022752 112022752 G A AMOT Missense_Mutation p.A877V 0.52 unknown(0) TCGA-EE-A2GS-06 X 118771077 118771077 G A SEPT6 Missense_Mutation p.T290I 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 X 122551445 122551445 G A GRIA3 Missense_Mutation p.G565R 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GS-06 X 123657415 123657415 G A TENM1 Silent p.F944F 0.53 TCGA-EE-A2GS-06 X 130218372 130218372 G A ARHGAP36 Missense_Mutation p.E247K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GS-06 X 131216398 131216398 G A FRMD7 Missense_Mutation p.R300C 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GS-06 X 138697137 138697137 C T MCF2 Silent p.R482R 0.44 TCGA-EE-A2GS-06 X 138864759 138864759 G A ATP11C Silent p.F636F 0.45 TCGA-EE-A2GS-06 X 140996436 140996436 G A MAGEC1 Silent p.R1082R 0.43 TCGA-EE-A2GS-06 X 141291413 141291413 C T MAGEC2 Missense_Mutation p.G121R 0.30 tolerated(0.12) benign(0.042) TCGA-EE-A2GS-06 X 142795544 142795544 T A SPANXN2 Missense_Mutation p.K45I 0.36 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A2GS-06 X 150832597 150832597 C T PASD1 Missense_Mutation p.S283F 0.30 tolerated(0.06) benign(0.074) TCGA-EE-A2GS-06 X 150912755 150912755 G A CNGA2 Missense_Mutation p.E594K 0.33 tolerated(0.16) benign(0.007) TCGA-EE-A2GS-06 X 151123444 151123444 C T GABRE Missense_Mutation p.G417E 0.47 tolerated(0.9) benign(0.067) TCGA-EE-A2GS-06 X 151123445 151123445 C T GABRE Missense_Mutation p.G417R 0.47 tolerated(0.34) possibly_damaging(0.769) TCGA-EE-A2GS-06 X 153051473 153051473 C T IDH3G Intron 0.32 TCGA-EE-A2GS-06 X 153582086 153582086 G A FLNA Missense_Mutation p.S1899F 0.47 deleterious(0) probably_damaging(0.921) TCGA-EE-A2GS-06 X 153699655 153699655 G A PLXNA3 Silent p.V1788V 0.46 TCGA-EE-A2GS-06 X 154215554 154215554 T A F8 Missense_Mutation p.T210S 0.38 tolerated(0.48) benign(0.045) TCGA-EE-A2GS-06 X 16170679 16170679 A G GRPR Missense_Mutation p.T356A 0.61 deleterious(0.03) benign(0.069) TCGA-EE-A2GS-06 X 18911701 18911701 C T PHKA2 Missense_Mutation p.A1204T 0.58 deleterious(0) possibly_damaging(0.509) TCGA-EE-A2GS-06 X 3238986 3238986 T C MXRA5 Silent p.V1580V 0.29 TCGA-EE-A2GS-06 X 32407792 32407792 C T DMD Splice_Site p.X1449_splice 0.28 TCGA-EE-A2GS-06 X 37027258 37027258 C T FAM47C Missense_Mutation p.H259Y 0.56 tolerated(0.89) benign(0.094) TCGA-EE-A2GS-06 X 55650562 55650562 C T FOXR2 Missense_Mutation p.P140S 0.42 tolerated(0.09) benign(0.011) TCGA-EE-A2GS-06 X 63410355 63410355 C T AMER1 Missense_Mutation p.G938R 0.56 tolerated(0.46) benign(0.012) TCGA-EE-A2GS-06 X 69282858 69282858 G A OTUD6A Missense_Mutation p.V162M 0.56 tolerated(0.13) benign(0.039) TCGA-EE-A2GS-06 X 73044289 73044289 G A XIST RNA 0.44 TCGA-EE-A2GS-06 X 99944858 99944858 C T SYTL4 Missense_Mutation p.D303N 0.39 deleterious(0.03) benign(0.008) TCGA-EE-A2GT-06 10 102789755 102789755 G C PDZD7 Missense_Mutation p.I74M 0.12 deleterious(0.03) possibly_damaging(0.764) TCGA-EE-A2GT-06 10 121663757 121663757 C T SEC23IP Missense_Mutation p.P357S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 10 123239441 123239441 G A FGFR2 Missense_Mutation p.S800F 0.29 deleterious(0) benign(0.008) TCGA-EE-A2GT-06 10 124596416 124596416 C T CUZD1 Missense_Mutation p.D250N 0.23 tolerated(0.14) probably_damaging(0.998) TCGA-EE-A2GT-06 10 15256299 15256299 C T FAM171A1 Missense_Mutation p.E430K 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A2GT-06 10 15290697 15290697 G A FAM171A1 Missense_Mutation p.T232M 0.19 tolerated(0.08) benign(0.051) TCGA-EE-A2GT-06 10 26500832 26500832 C T MYO3A Silent p.Y1597Y 0.26 TCGA-EE-A2GT-06 10 46321984 46321984 C T AGAP4 Silent p.V457V 0.13 TCGA-EE-A2GT-06 10 50532236 50532236 A G C10orf71 Missense_Mutation p.E549G 0.28 deleterious(0) probably_damaging(0.933) TCGA-EE-A2GT-06 10 51464983 51464983 G A AGAP7 Silent p.S491S 0.09 TCGA-EE-A2GT-06 10 55566674 55566674 G A PCDH15 Nonsense_Mutation p.R1571* 0.18 TCGA-EE-A2GT-06 10 55582009 55582009 G A PCDH15 Missense_Mutation p.P1828L 0.23 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2GT-06 10 64136580 64136580 G A ZNF365 Missense_Mutation p.E210K 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A2GT-06 10 81917398 81917398 G A ANXA11 Missense_Mutation p.S486L 0.25 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A2GT-06 10 96540369 96540369 G A CYP2C19 Missense_Mutation p.E199K 0.26 tolerated(0.62) benign(0.008) TCGA-EE-A2GT-06 11 102663421 102663421 G A MMP1 Silent p.F316F 0.19 TCGA-EE-A2GT-06 11 104915239 104915239 C T CARD16 Missense_Mutation p.D52N 0.19 deleterious(0.03) possibly_damaging(0.733) TCGA-EE-A2GT-06 11 10524388 10524388 G A AMPD3 Missense_Mutation p.G664R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 11 10524389 10524389 G T AMPD3 Missense_Mutation p.G664V 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 11 107526672 107526672 A G ELMOD1 Missense_Mutation p.I238V 0.17 tolerated(0.05) probably_damaging(0.994) TCGA-EE-A2GT-06 11 108381986 108381986 G A EXPH5 Silent p.S1416S 0.22 TCGA-EE-A2GT-06 11 111228230 111228230 C T POU2AF1 Silent p.T132T 0.25 TCGA-EE-A2GT-06 11 113802541 113802541 C T HTR3B Missense_Mutation p.S107F 0.15 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GT-06 11 120925773 120925773 C T TBCEL Silent p.L156L 0.12 TCGA-EE-A2GT-06 11 124121193 124121193 C T OR8G1 Silent p.F257F 0.12 TCGA-EE-A2GT-06 11 124135705 124135705 G A OR8G5 Missense_Mutation p.R328K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2GT-06 11 1275581 1275581 G A MUC5B Silent p.L5159L 0.14 TCGA-EE-A2GT-06 11 14665713 14665713 A G PDE3B Missense_Mutation p.Y31C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 11 17483187 17483187 G A ABCC8 Silent p.I255I 0.22 TCGA-EE-A2GT-06 11 22399065 22399065 G A SLC17A6 Missense_Mutation p.E510K 0.18 tolerated(0.28) benign(0.025) TCGA-EE-A2GT-06 11 2443413 2443413 C T TRPM5 Missense_Mutation p.D86N 0.14 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2GT-06 11 47640455 47640455 C T MTCH2 Missense_Mutation p.G281E 0.14 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GT-06 11 49974085 49974085 G A OR4C13 Missense_Mutation p.M37I 0.18 tolerated_low_confidence(0.28) benign(0.002) TCGA-EE-A2GT-06 11 49974865 49974865 G A OR4C13 Silent p.R297R 0.15 TCGA-EE-A2GT-06 11 5012687 5012687 C T MMP26 Missense_Mutation p.H186Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 11 5020224 5020224 G A OR51L1 Nonsense_Mutation p.W4* 0.22 TCGA-EE-A2GT-06 11 5221254 5221254 G A OR51V1 Missense_Mutation p.S226F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 11 5475289 5475289 G A OR51I2 Missense_Mutation p.D191N 0.21 deleterious(0.03) benign(0.092) TCGA-EE-A2GT-06 11 5475407 5475407 C T OR51I2 Missense_Mutation p.S230F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GT-06 11 55653186 55653186 G A TRIM51 Silent p.G94G 0.18 TCGA-EE-A2GT-06 11 55873147 55873147 C T OR8H2 Missense_Mutation p.S210F 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2GT-06 11 5776059 5776059 C T OR52N4 Missense_Mutation p.S30F 0.14 deleterious(0.01) probably_damaging(0.933) TCGA-EE-A2GT-06 11 5969351 5969351 C T OR56A3 Missense_Mutation p.L259F 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GT-06 11 6048593 6048593 G A OR56A1 Silent p.F114F 0.13 TCGA-EE-A2GT-06 11 63149726 63149726 G A SLC22A9 Silent p.R350R 0.15 TCGA-EE-A2GT-06 11 64850834 64850834 A C CDCA5 Splice_Site p.X81_splice 0.29 TCGA-EE-A2GT-06 11 68747577 68747577 C T MRGPRD Silent p.G293G 0.12 TCGA-EE-A2GT-06 11 72552619 72552619 A G FCHSD2 Missense_Mutation p.S646P 0.23 deleterious(0.03) benign(0.262) TCGA-EE-A2GT-06 11 76917208 76917208 G A MYO7A Silent p.Q1901Q 0.15 TCGA-EE-A2GT-06 11 82892196 82892196 G A PCF11 Missense_Mutation p.R1377Q 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-EE-A2GT-06 12 103795449 103795449 G A C12orf42 Missense_Mutation p.S28F 0.25 deleterious(0.01) probably_damaging(0.955) TCGA-EE-A2GT-06 12 104142808 104142808 G A STAB2 Silent p.T2104T 0.28 TCGA-EE-A2GT-06 12 105520090 105520090 C T KIAA1033 Nonsense_Mutation p.R330* 0.27 TCGA-EE-A2GT-06 12 108686256 108686256 C T CMKLR1 Missense_Mutation p.V162I 0.27 tolerated(0.94) benign(0.023) TCGA-EE-A2GT-06 12 109186337 109186337 G A SSH1 Silent p.L540L 0.24 TCGA-EE-A2GT-06 12 123067339 123067339 G A KNTC1 Missense_Mutation p.E1024K 0.16 deleterious(0.02) possibly_damaging(0.689) TCGA-EE-A2GT-06 12 124352501 124352501 G C DNAH10 Missense_Mutation p.D2334H 0.15 benign(0.222) TCGA-EE-A2GT-06 12 126138177 126138177 C T TMEM132B Missense_Mutation p.P720S 0.18 tolerated(0.43) benign(0.015) TCGA-EE-A2GT-06 12 129442122 129442122 G A GLT1D1 Silent p.R191R 0.18 TCGA-EE-A2GT-06 12 13061495 13061495 C T GPRC5A Silent p.L104L 0.16 TCGA-EE-A2GT-06 12 21196426 21196426 T G SLCO1B7 Missense_Mutation p.L249V 0.23 tolerated(0.46) benign(0.033) TCGA-EE-A2GT-06 12 2717803 2717803 C T CACNA1C Silent p.F1181F 0.25 TCGA-EE-A2GT-06 12 38710566 38710566 C T ALG10B 5'UTR 0.28 TCGA-EE-A2GT-06 12 5020959 5020959 G A KCNA1 Missense_Mutation p.E139K 0.15 deleterious(0.02) benign(0.139) TCGA-EE-A2GT-06 12 50369414 50369414 C T AQP6 Missense_Mutation p.S270F 0.29 deleterious(0.02) possibly_damaging(0.467) TCGA-EE-A2GT-06 12 54367074 54367074 G A HOXC11 Missense_Mutation p.E17K 0.40 deleterious(0.04) benign(0.219) TCGA-EE-A2GT-06 12 56487288 56487288 G A ERBB3 Silent p.T478T 0.20 TCGA-EE-A2GT-06 12 56514680 56514680 C - ZC3H10 Frame_Shift_Del p.P113Hfs*3 0.10 TCGA-EE-A2GT-06 12 5939637 5939637 C T ANO2 Silent p.K264K 0.31 TCGA-EE-A2GT-06 12 7019057 7019057 C T LRRC23 Nonsense_Mutation p.Q209* 0.19 TCGA-EE-A2GT-06 12 70946574 70946574 C T PTPRB Silent p.K1790K 0.19 TCGA-EE-A2GT-06 12 7651733 7651733 C T CD163 Missense_Mutation p.G170E 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GT-06 12 88379685 88379685 C T C12orf50 Silent p.T356T 0.18 TCGA-EE-A2GT-06 12 9307347 9307347 C T PZP Silent p.E1213E 0.21 TCGA-EE-A2GT-06 13 110857736 110857736 G A COL4A1 Silent p.P307P 0.25 TCGA-EE-A2GT-06 13 113333799 113333799 G A C13orf35 Missense_Mutation p.D36N 0.29 tolerated_low_confidence(0.31) benign(0.011) TCGA-EE-A2GT-06 13 20025323 20025323 G A TPTE2 Nonsense_Mutation p.R262* 0.21 TCGA-EE-A2GT-06 13 25901094 25901094 C T NUPL1 Nonsense_Mutation p.Q358* 0.20 TCGA-EE-A2GT-06 13 32366925 32366925 C T RXFP2 Missense_Mutation p.R496C 0.13 deleterious(0) possibly_damaging(0.773) TCGA-EE-A2GT-06 14 106552520 106552520 G A IGHV3-9 Missense_Mutation p.S40F 0.09 deleterious_low_confidence(0.01) benign(0.409) TCGA-EE-A2GT-06 14 107170347 107170347 G A IGHV1-69 Silent p.F7F 0.11 TCGA-EE-A2GT-06 14 107211238 107211238 G A IGHV3-73 Silent p.V17V 0.14 TCGA-EE-A2GT-06 14 22465902 22465902 T C TRAV17 5'UTR 0.29 TCGA-EE-A2GT-06 14 33201740 33201740 C T AKAP6 Silent p.G1027G 0.18 TCGA-EE-A2GT-06 14 67831653 67831653 C T EIF2S1 Missense_Mutation p.R57C 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 14 71197118 71197118 G A MAP3K9 Silent p.I1112I 0.19 TCGA-EE-A2GT-06 14 74969553 74969553 C T LTBP2 Missense_Mutation p.G1658D 0.16 deleterious(0) possibly_damaging(0.728) TCGA-EE-A2GT-06 14 75497287 75497287 G A MLH3 Missense_Mutation p.L1316F 0.20 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GT-06 14 79181466 79181466 A G NRXN3 Silent p.G303G 0.14 TCGA-EE-A2GT-06 14 93712229 93712229 G A BTBD7 Missense_Mutation p.A842V 0.25 tolerated_low_confidence(0.2) benign(0.001) TCGA-EE-A2GT-06 14 94158280 94158280 C T UNC79 Silent p.A2348A 0.20 TCGA-EE-A2GT-06 14 94912689 94912689 C A SERPINA11 Missense_Mutation p.W299L 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GT-06 14 96129885 96129885 C T TCL6 RNA 0.17 TCGA-EE-A2GT-06 15 27184496 27184496 C T GABRA5 Intron 0.12 TCGA-EE-A2GT-06 15 51535100 51535100 C T CYP19A1 Missense_Mutation p.E4K 0.19 deleterious_low_confidence(0.04) benign(0.021) TCGA-EE-A2GT-06 15 54305845 54305845 G A UNC13C Missense_Mutation p.E249K 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2GT-06 15 56387736 56387736 T C RFX7 Silent p.Q730Q 0.20 TCGA-EE-A2GT-06 15 70960302 70960302 T C UACA Silent p.L907L 0.11 TCGA-EE-A2GT-06 15 79749360 79749360 C T KIAA1024 Nonsense_Mutation p.R291* 0.20 TCGA-EE-A2GT-06 15 91430500 91430500 G A FES Missense_Mutation p.V190M 0.17 deleterious(0) possibly_damaging(0.584) TCGA-EE-A2GT-06 16 20548615 20548615 C T ACSM2B Missense_Mutation p.E567K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 16 21261828 21261828 G A ANKS4B Missense_Mutation p.G314D 0.21 tolerated(0.17) benign(0.014) TCGA-EE-A2GT-06 16 32264971 32264971 T C TP53TG3D Silent p.S99S 0.10 TCGA-EE-A2GT-06 16 50339413 50339413 G A ADCY7 Splice_Site p.X532_splice 0.17 TCGA-EE-A2GT-06 16 55897345 55897345 T C CES5A Missense_Mutation p.K271R 0.17 tolerated(0.13) benign(0.01) TCGA-EE-A2GT-06 16 66918893 66918893 C T PDP2 Nonsense_Mutation p.Q236* 0.17 TCGA-EE-A2GT-06 16 70926413 70926413 C T HYDIN Missense_Mutation p.G3090R 0.21 probably_damaging(0.991) TCGA-EE-A2GT-06 16 72170400 72170400 C G PMFBP1 Missense_Mutation p.E384Q 0.24 tolerated(0.16) probably_damaging(0.96) TCGA-EE-A2GT-06 16 74949783 74949783 C T WDR59 Silent p.R403R 0.13 TCGA-EE-A2GT-06 17 10402091 10402091 C T MYH1 Missense_Mutation p.D1345N 0.23 deleterious(0) probably_damaging(0.917) TCGA-EE-A2GT-06 17 10404730 10404730 C T MYH1 Silent p.R1145R 0.24 TCGA-EE-A2GT-06 17 12812255 12812255 G A ARHGAP44 Silent p.E80E 0.22 TCGA-EE-A2GT-06 17 25967705 25967705 G A LGALS9 Missense_Mutation p.G80E 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2GT-06 17 34499220 34499220 C T TBC1D3B Missense_Mutation p.G164E 0.10 deleterious(0) possibly_damaging(0.768) TCGA-EE-A2GT-06 17 40321597 40321597 C G KCNH4 Missense_Mutation p.K496N 0.33 deleterious(0) benign(0.177) TCGA-EE-A2GT-06 17 47376020 47376020 G A ZNF652 Missense_Mutation p.P526S 0.38 tolerated_low_confidence(0.49) benign(0.001) TCGA-EE-A2GT-06 17 4936279 4936279 C T SLC52A1 Silent p.K440K 0.21 TCGA-EE-A2GT-06 17 73258561 73258561 C T MRPS7 Intron 0.28 TCGA-EE-A2GT-06 17 7529810 7529810 G A SAT2 Silent p.F156F 0.21 TCGA-EE-A2GT-06 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.17 TCGA-EE-A2GT-06 17 7574004 7574004 G A TP53 Silent p.F341F 0.17 TCGA-EE-A2GT-06 17 9489185 9489185 G A WDR16 Missense_Mutation p.E56K 0.25 tolerated(1) benign(0.002) TCGA-EE-A2GT-06 18 2891206 2891206 A C EMILIN2 Missense_Mutation p.S361R 0.15 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A2GT-06 18 28993439 28993439 C T DSG4 Nonsense_Mutation p.Q1021* 0.22 TCGA-EE-A2GT-06 18 33552812 33552812 T A C18orf21 Intron 0.16 TCGA-EE-A2GT-06 18 40695429 40695429 C T RIT2 Missense_Mutation p.R19K 0.16 tolerated(0.09) probably_damaging(0.977) TCGA-EE-A2GT-06 18 58038851 58038851 C T MC4R Silent p.A244A 0.23 TCGA-EE-A2GT-06 18 59483555 59483555 C T RNF152 Missense_Mutation p.D48N 0.36 tolerated(0.18) benign(0.331) TCGA-EE-A2GT-06 18 61323046 61323046 C T SERPINB3 Missense_Mutation p.G340R 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 19 1127675 1127675 G A SBNO2 Silent p.F123F 0.20 TCGA-EE-A2GT-06 19 15338647 15338647 G A EPHX3 Silent p.F264F 0.19 TCGA-EE-A2GT-06 19 15918195 15918195 G A OR10H1 Missense_Mutation p.S218F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 19 16338471 16338471 C T AP1M1 Silent p.F274F 0.22 TCGA-EE-A2GT-06 19 19339385 19339385 G A NCAN Missense_Mutation p.E986K 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GT-06 19 1969909 1969909 C T CSNK1G2 Silent p.F46F 0.23 TCGA-EE-A2GT-06 19 1969910 1969910 C T CSNK1G2 Missense_Mutation p.R47C 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 19 22271151 22271151 C T ZNF257 Missense_Mutation p.S200F 0.17 tolerated(0.42) benign(0.012) TCGA-EE-A2GT-06 19 22939400 22939400 G A ZNF99 3'Flank 0.19 TCGA-EE-A2GT-06 19 23405829 23405829 G A ZNF724P Silent p.S406S 0.19 TCGA-EE-A2GT-06 19 35449944 35449944 T C ZNF792 Missense_Mutation p.H272R 0.22 deleterious(0.03) benign(0.067) TCGA-EE-A2GT-06 19 36124009 36124009 C T RBM42 Missense_Mutation p.P180L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 19 37643288 37643288 G A ZNF585A Nonsense_Mutation p.Q450* 0.20 TCGA-EE-A2GT-06 19 39003109 39003109 G A RYR1 Missense_Mutation p.G3153E 0.24 benign(0.024) TCGA-EE-A2GT-06 19 42848969 42848969 C T MEGF8 Missense_Mutation p.T694I 0.20 tolerated(0.15) benign(0.011) TCGA-EE-A2GT-06 19 4294776 4294776 G A TMIGD2 Silent p.F148F 0.21 TCGA-EE-A2GT-06 19 4311957 4311957 G A FSD1 Silent p.R203R 0.33 TCGA-EE-A2GT-06 19 43348645 43348645 C T PSG10P RNA 0.22 TCGA-EE-A2GT-06 19 43683261 43683261 T C PSG5 Intron 0.25 TCGA-EE-A2GT-06 19 4409284 4409284 C T CHAF1A Missense_Mutation p.A163V 0.25 tolerated_low_confidence(0.22) possibly_damaging(0.483) TCGA-EE-A2GT-06 19 48878954 48878954 G A SYNGR4 Missense_Mutation p.G139E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 19 50212081 50212081 G A CPT1C Nonsense_Mutation p.W517* 0.24 TCGA-EE-A2GT-06 19 50764788 50764788 C A MYH14 Missense_Mutation p.F827L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 19 50905595 50905595 C T POLD1 Silent p.F241F 0.21 TCGA-EE-A2GT-06 19 50983459 50983459 C T EMC10 Missense_Mutation p.S130F 0.29 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GT-06 19 51274920 51274920 C T GPR32 Missense_Mutation p.R355W 0.14 deleterious_low_confidence(0.02) benign(0.353) TCGA-EE-A2GT-06 19 51358237 51358237 C T KLK3 Missense_Mutation p.T9I 0.17 tolerated(0.09) benign(0.01) TCGA-EE-A2GT-06 19 52220364 52220364 G A HAS1 Missense_Mutation p.A262V 0.12 deleterious(0) probably_damaging(0.98) TCGA-EE-A2GT-06 19 52249583 52249583 C T FPR1 Missense_Mutation p.G222E 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GT-06 19 52448381 52448381 C T ZNF613 Silent p.L415L 0.35 TCGA-EE-A2GT-06 19 53007926 53007926 G A ZNF578 Missense_Mutation p.D28N 0.14 deleterious(0) probably_damaging(0.981) TCGA-EE-A2GT-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.29 TCGA-EE-A2GT-06 19 54216624 54216624 G A MIR519D RNA 0.08 TCGA-EE-A2GT-06 19 55493003 55493003 G A NLRP2 Missense_Mutation p.G139E 0.18 tolerated(0.93) benign(0.002) TCGA-EE-A2GT-06 19 56320375 56320375 C T NLRP11 Missense_Mutation p.R534H 0.15 tolerated(0.11) benign(0.042) TCGA-EE-A2GT-06 19 56369223 56369223 G A NLRP4 Missense_Mutation p.G155E 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 19 56953852 56953852 G A ZNF667 Missense_Mutation p.P171L 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2GT-06 19 58287975 58287975 A T ZNF586 Missense_Mutation p.E34V 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2GT-06 19 6825082 6825082 C G VAV1 Missense_Mutation p.Q225E 0.18 tolerated(0.35) benign(0.02) TCGA-EE-A2GT-06 19 9059806 9059806 T C MUC16 Missense_Mutation p.T9214A 0.23 unknown(0) TCGA-EE-A2GT-06 19 9066158 9066158 G A MUC16 Silent p.L7096L 0.15 TCGA-EE-A2GT-06 19 9091402 9091402 C T MUC16 Missense_Mutation p.G138E 0.16 unknown(0) TCGA-EE-A2GT-06 19 9297154 9297154 G A OR7D2 Missense_Mutation p.G233R 0.25 deleterious_low_confidence(0.02) benign(0.139) TCGA-EE-A2GT-06 1 104116981 104116981 C T AMY2B Missense_Mutation p.R282C 0.12 deleterious(0) possibly_damaging(0.45) TCGA-EE-A2GT-06 1 110735144 110735144 C T SLC6A17 Silent p.L375L 0.21 TCGA-EE-A2GT-06 1 111060615 111060615 G A KCNA10 Silent p.T265T 0.20 TCGA-EE-A2GT-06 1 111996858 111996858 C T ATP5F1 Missense_Mutation p.H35Y 0.10 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2GT-06 1 152057982 152057982 C T TCHHL1 Missense_Mutation p.E726K 0.17 deleterious(0.03) benign(0.064) TCGA-EE-A2GT-06 1 152284699 152284699 C T FLG Missense_Mutation p.G888E 0.22 probably_damaging(0.998) TCGA-EE-A2GT-06 1 152957880 152957880 G A SPRR1A Silent p.Q58Q 0.11 TCGA-EE-A2GT-06 1 153409576 153409576 C T S100A7L2 Silent p.K99K 0.29 TCGA-EE-A2GT-06 1 154988817 154988817 G C ZBTB7B Missense_Mutation p.G460R 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GT-06 1 156262907 156262907 G A C1orf85 Silent p.L383L 0.11 TCGA-EE-A2GT-06 1 157805633 157805633 G A CD5L Missense_Mutation p.S123L 0.26 tolerated(0.41) benign(0.002) TCGA-EE-A2GT-06 1 158609424 158609424 C T SPTA1 Missense_Mutation p.G1643E 0.26 tolerated(1) benign(0.358) TCGA-EE-A2GT-06 1 158911876 158911876 C T PYHIN1 Missense_Mutation p.S230F 0.20 deleterious(0) benign(0.004) TCGA-EE-A2GT-06 1 160654704 160654704 C T CD48 Missense_Mutation p.E120K 0.18 tolerated(0.08) possibly_damaging(0.557) TCGA-EE-A2GT-06 1 16258240 16258240 C T SPEN Silent p.I1835I 0.35 TCGA-EE-A2GT-06 1 162688866 162688866 C T DDR2 Missense_Mutation p.P5S 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2GT-06 1 162724418 162724418 G A DDR2 Missense_Mutation p.D64N 0.22 tolerated(0.32) benign(0.046) TCGA-EE-A2GT-06 1 16374459 16374459 G A CLCNKB Missense_Mutation p.D140N 0.14 deleterious(0.02) possibly_damaging(0.653) TCGA-EE-A2GT-06 1 164761831 164761831 G A PBX1 Silent p.K122K 0.23 TCGA-EE-A2GT-06 1 169762604 169762604 G A METTL18 Missense_Mutation p.P78L 0.25 tolerated(0.22) benign(0.001) TCGA-EE-A2GT-06 1 171958194 171958194 G A DNM3 Silent p.T165T 0.28 TCGA-EE-A2GT-06 1 175355287 175355287 T G TNR Missense_Mutation p.Q553P 0.13 tolerated(0.09) probably_damaging(0.935) TCGA-EE-A2GT-06 1 176563915 176563915 C T PAPPA2 Missense_Mutation p.S392F 0.31 tolerated(0.27) benign(0.025) TCGA-EE-A2GT-06 1 176668693 176668693 G T PAPPA2 Silent p.V1068V 0.18 TCGA-EE-A2GT-06 1 18808315 18808315 G A KLHDC7A Silent p.G280G 0.21 TCGA-EE-A2GT-06 1 18808384 18808384 G A KLHDC7A Silent p.Q303Q 0.33 TCGA-EE-A2GT-06 1 197898258 197898258 C T LHX9 Missense_Mutation p.P355S 0.18 tolerated(0.09) probably_damaging(0.931) TCGA-EE-A2GT-06 1 20442014 20442014 C T PLA2G2D Missense_Mutation p.G93E 0.29 deleterious(0) probably_damaging(0.976) TCGA-EE-A2GT-06 1 204588730 204588730 G A LRRN2 Missense_Mutation p.R131W 0.26 deleterious(0) probably_damaging(0.91) TCGA-EE-A2GT-06 1 20517071 20517071 C T UBXN10 Missense_Mutation p.P6L 0.18 tolerated(1) benign(0.118) TCGA-EE-A2GT-06 1 205500479 205500479 G A CDK18 Silent p.G496G 0.13 TCGA-EE-A2GT-06 1 206331162 206331162 G A CTSE Missense_Mutation p.G390R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 1 207110523 207110523 C T PIGR Missense_Mutation p.G321E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 1 209964116 209964116 G A IRF6 Nonsense_Mutation p.Q262* 0.27 TCGA-EE-A2GT-06 1 23759722 23759722 C T ASAP3 Missense_Mutation p.G724E 0.19 tolerated(0.05) possibly_damaging(0.548) TCGA-EE-A2GT-06 1 237787107 237787107 C T RYR2 Missense_Mutation p.P1987S 0.19 benign(0.244) TCGA-EE-A2GT-06 1 34684386 34684386 C T C1orf94 3'UTR 0.18 TCGA-EE-A2GT-06 1 38484757 38484757 C T UTP11L Silent p.L123L 0.26 TCGA-EE-A2GT-06 1 40310205 40310205 G A TRIT1 Nonsense_Mutation p.Q372* 0.21 TCGA-EE-A2GT-06 1 45974898 45974898 T C MMACHC 3'UTR 0.19 TCGA-EE-A2GT-06 1 46659580 46659580 G A POMGNT1 Silent p.V299V 0.17 TCGA-EE-A2GT-06 1 47027272 47027272 G A MKNK1 Missense_Mutation p.P336S 0.08 tolerated(0.05) benign(0.392) TCGA-EE-A2GT-06 1 52991393 52991393 G A ZCCHC11 Missense_Mutation p.S187F 0.15 deleterious_low_confidence(0.03) benign(0.361) TCGA-EE-A2GT-06 1 55167824 55167824 G A MROH7 Missense_Mutation p.R1116Q 0.22 tolerated(0.13) benign(0.025) TCGA-EE-A2GT-06 1 57347137 57347137 G A C8A Missense_Mutation p.E162K 0.19 tolerated(0.08) benign(0.111) TCGA-EE-A2GT-06 1 60373474 60373474 G A CYP2J2 Silent p.L329L 0.23 TCGA-EE-A2GT-06 1 63307135 63307135 C T ATG4C Nonsense_Mutation p.R376* 0.14 TCGA-EE-A2GT-06 1 70518723 70518723 A C LRRC7 Missense_Mutation p.Q1337H 0.11 deleterious(0) possibly_damaging(0.541) TCGA-EE-A2GT-06 1 8418778 8418778 G A RERE Missense_Mutation p.P1273S 0.26 unknown(0) TCGA-EE-A2GT-06 1 9416644 9416644 C T SPSB1 Missense_Mutation p.P232S 0.29 tolerated(0.1) benign(0.062) TCGA-EE-A2GT-06 1 94654429 94654429 C T ARHGAP29 Missense_Mutation p.E549K 0.21 deleterious(0) possibly_damaging(0.654) TCGA-EE-A2GT-06 20 10541454 10541454 C G SLX4IP Missense_Mutation p.P75R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 20 10541455 10541455 C G SLX4IP Silent p.P75P 0.25 TCGA-EE-A2GT-06 20 31829239 31829239 C T BPIFA1 Silent p.I210I 0.23 TCGA-EE-A2GT-06 20 32883331 32883331 G A AHCY Missense_Mutation p.P30L 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.852) TCGA-EE-A2GT-06 20 41306544 41306544 G A PTPRT Missense_Mutation p.P372L 0.25 tolerated(0.19) benign(0.411) TCGA-EE-A2GT-06 20 42199276 42199276 G A SGK2 Missense_Mutation p.R187Q 0.22 deleterious(0.01) possibly_damaging(0.602) TCGA-EE-A2GT-06 20 42683020 42683020 G A TOX2 Missense_Mutation p.E245K 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2GT-06 20 57045666 57045666 C T APCDD1L Missense_Mutation p.G63S 0.45 tolerated(0.35) benign(0.084) TCGA-EE-A2GT-06 20 9319562 9319562 C G PLCB4 Missense_Mutation p.L83V 0.07 tolerated(0.1) benign(0.034) TCGA-EE-A2GT-06 21 31933457 31933457 G A KRTAP19-7 Missense_Mutation p.P51L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GT-06 21 31933458 31933458 G A KRTAP19-7 Missense_Mutation p.P51S 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2GT-06 21 40652152 40652152 G C BRWD1 Missense_Mutation p.S285C 0.28 deleterious(0.01) possibly_damaging(0.733) TCGA-EE-A2GT-06 21 42080539 42080539 C T DSCAM Missense_Mutation p.D68N 0.33 tolerated(0.18) benign(0.258) TCGA-EE-A2GT-06 21 44841562 44841562 G A SIK1 Missense_Mutation p.T152I 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GT-06 21 45959507 45959507 G A KRTAP10-1 Missense_Mutation p.S176F 0.20 deleterious(0.04) unknown(0) TCGA-EE-A2GT-06 21 47918558 47918558 C T DIP2A Missense_Mutation p.P156L 0.23 tolerated(0.55) benign(0.017) TCGA-EE-A2GT-06 22 17072012 17072012 G A CCT8L2 Silent p.L477L 0.17 TCGA-EE-A2GT-06 22 22735540 22735540 C T IGLV1-44 Silent p.L59L 0.13 TCGA-EE-A2GT-06 22 25243686 25243686 G A SGSM1 Missense_Mutation p.M75I 0.23 deleterious(0.04) possibly_damaging(0.593) TCGA-EE-A2GT-06 22 36922108 36922108 C T EIF3D Missense_Mutation p.V21I 0.14 tolerated(0.61) benign(0.012) TCGA-EE-A2GT-06 22 37271803 37271803 G A NCF4 Missense_Mutation p.E246K 0.20 deleterious_low_confidence(0) benign(0.382) TCGA-EE-A2GT-06 22 38046168 38046168 C G SH3BP1 Silent p.A442A 0.21 TCGA-EE-A2GT-06 22 40827452 40827452 G A MKL1 Silent p.S32S 0.16 TCGA-EE-A2GT-06 22 44681599 44681599 C T KIAA1644 Nonsense_Mutation p.W103* 0.15 TCGA-EE-A2GT-06 22 45828278 45828278 A G RIBC2 3'UTR 0.29 TCGA-EE-A2GT-06 22 46658652 46658652 G A PKDREJ Missense_Mutation p.R190C 0.12 deleterious(0.02) benign(0.335) TCGA-EE-A2GT-06 2 10059866 10059866 T G TAF1B Silent p.L494L 0.34 TCGA-EE-A2GT-06 2 10059867 10059867 C T TAF1B Nonsense_Mutation p.Q495* 0.34 TCGA-EE-A2GT-06 2 103136335 103136335 G A SLC9A4 Missense_Mutation p.G580E 0.12 tolerated(0.92) benign(0.002) TCGA-EE-A2GT-06 2 107040666 107040666 C T RGPD3 Missense_Mutation p.D1253N 0.24 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GT-06 2 108488724 108488724 G A RGPD4 Missense_Mutation p.G1422R 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 2 109384184 109384184 G A RANBP2 Missense_Mutation p.G2397R 0.05 deleterious(0) probably_damaging(0.974) TCGA-EE-A2GT-06 2 1204872 1204872 C T SNTG2 Silent p.S225S 0.21 TCGA-EE-A2GT-06 2 121746665 121746665 G A GLI2 Missense_Mutation p.D1059N 0.23 tolerated(0.06) possibly_damaging(0.454) TCGA-EE-A2GT-06 2 121748014 121748014 C T GLI2 Silent p.P1508P 0.20 TCGA-EE-A2GT-06 2 121748185 121748185 C T GLI2 Silent p.V1565V 0.14 TCGA-EE-A2GT-06 2 128750785 128750785 C T SAP130 Missense_Mutation p.V511M 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A2GT-06 2 1459875 1459875 C G TPO Missense_Mutation p.Q214E 0.33 tolerated(0.16) benign(0.034) TCGA-EE-A2GT-06 2 152314361 152314361 C T RIF1 Silent p.S913S 0.15 TCGA-EE-A2GT-06 2 168107012 168107012 C T XIRP2 Missense_Mutation p.S3037F 0.24 benign(0.178) TCGA-EE-A2GT-06 2 169780144 169780144 G A ABCB11 Silent p.S1318S 0.17 TCGA-EE-A2GT-06 2 174096940 174096940 C T MLTK Silent p.L351L 0.18 TCGA-EE-A2GT-06 2 17696505 17696505 C T RAD51AP2 Missense_Mutation p.E1060K 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2GT-06 2 179455686 179455686 G A TTN Missense_Mutation p.P20256S 0.16 TCGA-EE-A2GT-06 2 179457984 179457984 C T TTN Missense_Mutation p.E19651K 0.27 TCGA-EE-A2GT-06 2 179500209 179500209 C T TTN Missense_Mutation p.E13948K 0.33 TCGA-EE-A2GT-06 2 179582406 179582406 G A TTN Missense_Mutation p.L8399F 0.15 TCGA-EE-A2GT-06 2 183291382 183291382 C T PDE1A Intron 0.21 TCGA-EE-A2GT-06 2 185801225 185801225 G A ZNF804A Missense_Mutation p.D368N 0.38 deleterious(0.05) benign(0.14) TCGA-EE-A2GT-06 2 185803137 185803137 T G ZNF804A Nonsense_Mutation p.L1005* 0.22 TCGA-EE-A2GT-06 2 192279255 192279256 - T MYO1B Frame_Shift_Ins p.L1009Pfs*6 0.12 TCGA-EE-A2GT-06 2 198646462 198646462 C T BOLL Missense_Mutation p.G50E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GT-06 2 20201770 20201770 G A MATN3 Missense_Mutation p.H330Y 0.17 tolerated(1) probably_damaging(0.92) TCGA-EE-A2GT-06 2 203846876 203846876 C T CARF Missense_Mutation p.P591S 0.23 tolerated_low_confidence(0.21) possibly_damaging(0.545) TCGA-EE-A2GT-06 2 211473190 211473190 G A CPS1 Silent p.L772L 0.19 TCGA-EE-A2GT-06 2 21224871 21224871 C T APOB Missense_Mutation p.E4475K 0.18 benign(0.002) TCGA-EE-A2GT-06 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.25 tolerated(0.35) probably_damaging(0.947) TCGA-EE-A2GT-06 2 227875129 227875129 C T COL4A4 Silent p.T1474T 0.29 TCGA-EE-A2GT-06 2 227906900 227906900 C T COL4A4 Missense_Mutation p.G1157R 0.25 unknown(0) TCGA-EE-A2GT-06 2 228846520 228846520 G A SPHKAP Silent p.F1672F 0.23 TCGA-EE-A2GT-06 2 228883352 228883352 C T SPHKAP Missense_Mutation p.E740K 0.25 tolerated(0.06) possibly_damaging(0.52) TCGA-EE-A2GT-06 2 229890709 229890709 G A PID1 Missense_Mutation p.P129L 0.37 deleterious(0.01) benign(0.356) TCGA-EE-A2GT-06 2 231254723 231254723 G A SP140L Missense_Mutation p.E317K 0.17 tolerated(0.88) benign(0.009) TCGA-EE-A2GT-06 2 242742801 242742801 C T GAL3ST2 Silent p.I139I 0.30 TCGA-EE-A2GT-06 2 26418002 26418002 C T HADHA Missense_Mutation p.A527T 0.31 tolerated(0.34) benign(0.03) TCGA-EE-A2GT-06 2 27445437 27445437 C T CAD Silent p.D182D 0.17 TCGA-EE-A2GT-06 2 3392122 3392122 C T TRAPPC12 Missense_Mutation p.P243L 0.39 tolerated_low_confidence(0.1) benign(0.121) TCGA-EE-A2GT-06 2 69734626 69734626 G A AAK1 Silent p.P697P 0.21 TCGA-EE-A2GT-06 2 71827952 71827952 G A DYSF Missense_Mutation p.E1293K 0.13 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2GT-06 2 76976028 76976028 C T LRRTM4 Missense_Mutation p.M522I 0.19 tolerated_low_confidence(0.37) benign(0) TCGA-EE-A2GT-06 2 84784929 84784929 C T DNAH6 Missense_Mutation p.S558L 0.13 tolerated(0.22) benign(0.011) TCGA-EE-A2GT-06 2 85534770 85534770 G A TCF7L1 Silent p.K421K 0.18 TCGA-EE-A2GT-06 2 89476122 89476122 C T IGKV2-24 Missense_Mutation p.G17E 0.16 tolerated(0.07) benign(0.166) TCGA-EE-A2GT-06 2 89987050 89987050 T G IGKV2D-29 Missense_Mutation p.Y111D 0.21 deleterious(0) possibly_damaging(0.837) TCGA-EE-A2GT-06 2 96810101 96810101 C A DUSP2 Silent p.V174V 0.08 TCGA-EE-A2GT-06 2 98453576 98453576 G A TMEM131 Silent p.L256L 0.14 TCGA-EE-A2GT-06 3 113138963 113138963 G A WDR52 Silent p.A157A 0.14 TCGA-EE-A2GT-06 3 120449611 120449611 G A RABL3 Missense_Mutation p.H24Y 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GT-06 3 121822654 121822654 G A CD86 Missense_Mutation p.M120I 0.25 tolerated(0.12) benign(0.035) TCGA-EE-A2GT-06 3 12194958 12194958 G A TIMP4 3'UTR 0.28 TCGA-EE-A2GT-06 3 122335876 122335876 G T PARP15 Missense_Mutation p.V289F 0.21 deleterious(0.04) benign(0.386) TCGA-EE-A2GT-06 3 126915998 126915998 G A C3orf56 Missense_Mutation p.G157E 0.24 tolerated(0.61) probably_damaging(0.969) TCGA-EE-A2GT-06 3 136699281 136699281 C T IL20RB Intron 0.25 TCGA-EE-A2GT-06 3 141671371 141671371 G A TFDP2 Missense_Mutation p.S442F 0.17 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EE-A2GT-06 3 142268424 142268424 A G ATR Missense_Mutation p.V1023A 0.18 tolerated(0.53) benign(0.02) TCGA-EE-A2GT-06 3 155199129 155199129 G A PLCH1 Silent p.L1570L 0.21 TCGA-EE-A2GT-06 3 156763400 156763400 C T LEKR1 Missense_Mutation p.T647I 0.19 tolerated(0.14) possibly_damaging(0.702) TCGA-EE-A2GT-06 3 156763401 156763401 C T LEKR1 Silent p.T647T 0.19 TCGA-EE-A2GT-06 3 158310307 158310307 C T MLF1 Silent p.I60I 0.13 TCGA-EE-A2GT-06 3 170141080 170141080 G A CLDN11 Missense_Mutation p.R119Q 0.27 tolerated(0.28) possibly_damaging(0.545) TCGA-EE-A2GT-06 3 183056698 183056698 G A MCF2L2 Missense_Mutation p.P126S 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GT-06 3 186395340 186395340 C G HRG Missense_Mutation p.P416A 0.19 deleterious(0) possibly_damaging(0.811) TCGA-EE-A2GT-06 3 195611830 195611830 G T TNK2 Silent p.P166P 0.21 TCGA-EE-A2GT-06 3 24185081 24185081 C T THRB Missense_Mutation p.E217K 0.16 deleterious(0.03) benign(0.005) TCGA-EE-A2GT-06 3 27498225 27498225 G A SLC4A7 5'UTR 0.19 TCGA-EE-A2GT-06 3 36898977 36898977 C T TRANK1 Missense_Mutation p.D702N 0.29 tolerated(0.55) benign(0.002) TCGA-EE-A2GT-06 3 38158037 38158037 G A DLEC1 Missense_Mutation p.R1317Q 0.18 tolerated(0.11) benign(0.014) TCGA-EE-A2GT-06 3 38158038 38158038 G A DLEC1 Silent p.R1317R 0.18 TCGA-EE-A2GT-06 3 38348010 38348010 A T SLC22A14 Nonsense_Mutation p.K165* 0.19 TCGA-EE-A2GT-06 3 38607906 38607906 G A SCN5A Silent p.I1278I 0.24 TCGA-EE-A2GT-06 3 3886930 3886930 C T LRRN1 Missense_Mutation p.P202L 0.15 deleterious(0) probably_damaging(0.989) TCGA-EE-A2GT-06 3 3887559 3887559 G A LRRN1 Missense_Mutation p.E412K 0.19 tolerated(0.07) benign(0.056) TCGA-EE-A2GT-06 3 44893366 44893366 G A KIF15 Silent p.E1298E 0.22 TCGA-EE-A2GT-06 3 48605294 48605294 G A COL7A1 Missense_Mutation p.L2636F 0.16 probably_damaging(0.978) TCGA-EE-A2GT-06 3 48605295 48605295 G A COL7A1 Silent p.G2635G 0.16 TCGA-EE-A2GT-06 3 49051440 49051440 C T WDR6 Missense_Mutation p.P855S 0.17 tolerated(0.31) benign(0.002) TCGA-EE-A2GT-06 3 51198126 51198126 G A DOCK3 Missense_Mutation p.V344I 0.18 tolerated(0.15) benign(0.005) TCGA-EE-A2GT-06 3 5252853 5252853 C T EDEM1 Silent p.D544D 0.12 TCGA-EE-A2GT-06 3 5252854 5252854 C T EDEM1 Missense_Mutation p.R545W 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 3 52548813 52548813 C A STAB1 Missense_Mutation p.R1259S 0.30 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GT-06 3 52557285 52557285 G A STAB1 Silent p.L2356L 0.32 TCGA-EE-A2GT-06 3 57494241 57494241 T G DNAH12 Missense_Mutation p.H190P 0.26 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2GT-06 3 93780296 93780296 G A DHFRL1 Silent p.N20N 0.25 TCGA-EE-A2GT-06 3 97311571 97311571 G A EPHA6 Silent p.R834R 0.27 TCGA-EE-A2GT-06 4 107114875 107114875 C T TBCK Silent p.G650G 0.36 TCGA-EE-A2GT-06 4 115544196 115544196 T A UGT8 Missense_Mutation p.F54I 0.59 tolerated(0.63) benign(0.306) TCGA-EE-A2GT-06 4 120190984 120190984 G A USP53 Missense_Mutation p.R476Q 0.21 tolerated(0.11) benign(0.044) TCGA-EE-A2GT-06 4 183650198 183650198 G A TENM3 Missense_Mutation p.D817N 0.24 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2GT-06 4 20852196 20852196 C T KCNIP4 Silent p.E86E 0.22 TCGA-EE-A2GT-06 4 26638892 26638892 C T TBC1D19 Silent p.I118I 0.22 TCGA-EE-A2GT-06 4 2900018 2900018 A G ADD1 Silent p.K283K 0.21 TCGA-EE-A2GT-06 4 44691384 44691384 C T GUF1 Missense_Mutation p.T387I 0.21 deleterious(0.05) benign(0.015) TCGA-EE-A2GT-06 4 46930648 46930648 G A GABRA4 Missense_Mutation p.S420F 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-EE-A2GT-06 4 8383294 8383294 G A ACOX3 Silent p.L526L 0.22 TCGA-EE-A2GT-06 5 112176863 112176863 C T APC Nonsense_Mutation p.R1858* 0.27 TCGA-EE-A2GT-06 5 131539494 131539494 G A P4HA2 Missense_Mutation p.R400C 0.35 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A2GT-06 5 13762983 13762983 C T DNAH5 Missense_Mutation p.E3377K 0.11 possibly_damaging(0.621) TCGA-EE-A2GT-06 5 13762984 13762984 T C DNAH5 Silent p.E3376E 0.13 TCGA-EE-A2GT-06 5 13913969 13913969 G A DNAH5 Silent p.F473F 0.20 TCGA-EE-A2GT-06 5 140188125 140188125 C T PCDHA4 Silent p.N451N 0.24 TCGA-EE-A2GT-06 5 140475592 140475592 G A PCDHB2 Silent p.V406V 0.26 TCGA-EE-A2GT-06 5 148406203 148406203 C T SH3TC2 Silent p.R995R 0.26 TCGA-EE-A2GT-06 5 153054092 153054092 G A GRIA1 Silent p.K254K 0.27 TCGA-EE-A2GT-06 5 2748634 2748634 C T IRX2 Silent p.G396G 0.16 TCGA-EE-A2GT-06 5 31299667 31299667 G A CDH6 Missense_Mutation p.G247E 0.23 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2GT-06 5 36049520 36049520 C T UGT3A2 Missense_Mutation p.G105E 0.14 tolerated(1) benign(0.001) TCGA-EE-A2GT-06 5 40972545 40972545 G A C7 Silent p.Q641Q 0.33 TCGA-EE-A2GT-06 5 41039656 41039656 C T MROH2B Missense_Mutation p.G652E 0.15 deleterious(0) probably_damaging(0.973) TCGA-EE-A2GT-06 5 42804833 42804833 G A SEPP1 Silent p.F153F 0.19 TCGA-EE-A2GT-06 5 54275124 54275124 G A ESM1 3'UTR 0.26 TCGA-EE-A2GT-06 5 55147444 55147444 G A IL31RA Missense_Mutation p.E16K 0.20 tolerated_low_confidence(0.5) benign(0) TCGA-EE-A2GT-06 5 78338268 78338268 C T DMGDH Missense_Mutation p.R344Q 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GT-06 5 79366551 79366551 G A THBS4 Missense_Mutation p.G513E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 5 89990440 89990440 G A GPR98 Missense_Mutation p.E2623K 0.15 probably_damaging(0.974) TCGA-EE-A2GT-06 5 89992806 89992806 G A GPR98 Silent p.E2666E 0.18 TCGA-EE-A2GT-06 5 98235231 98235231 C A CHD1 Missense_Mutation p.M346I 0.34 tolerated(0.14) benign(0.139) TCGA-EE-A2GT-06 6 105178179 105178179 A G HACE1 Missense_Mutation p.C876R 0.22 deleterious(0) probably_damaging(0.912) TCGA-EE-A2GT-06 6 116442428 116442428 G T COL10A1 Missense_Mutation p.P284H 0.08 deleterious(0.02) unknown(0) TCGA-EE-A2GT-06 6 117047683 117047683 C T KPNA5 Missense_Mutation p.P384L 0.18 deleterious(0.03) benign(0.016) TCGA-EE-A2GT-06 6 124604171 124604171 A C NKAIN2 Missense_Mutation p.Q25H 0.12 deleterious(0) probably_damaging(0.982) TCGA-EE-A2GT-06 6 129637294 129637294 G A LAMA2 Missense_Mutation p.G1346R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 6 132636902 132636902 G A MOXD1 Silent p.T460T 0.31 TCGA-EE-A2GT-06 6 161020663 161020663 C T LPA Silent p.Q1052Q 0.19 TCGA-EE-A2GT-06 6 25923937 25923937 C T SLC17A2 Missense_Mutation p.E76K 0.41 tolerated(0.21) benign(0.005) TCGA-EE-A2GT-06 6 26407969 26407969 C T BTN3A1 Silent p.S168S 0.12 TCGA-EE-A2GT-06 6 29364640 29364640 C T OR12D2 Missense_Mutation p.S55F 0.50 deleterious(0) benign(0.379) TCGA-EE-A2GT-06 6 42797269 42797269 C T GLTSCR1L Nonsense_Mutation p.Q400* 0.28 TCGA-EE-A2GT-06 6 42995176 42995176 C G RRP36 Missense_Mutation p.Q202E 0.27 tolerated(0.16) benign(0.338) TCGA-EE-A2GT-06 6 47541892 47541892 C T CD2AP Nonsense_Mutation p.R212* 0.21 TCGA-EE-A2GT-06 6 52053993 52053993 G A IL17A Missense_Mutation p.R124K 0.32 deleterious(0.04) benign(0.35) TCGA-EE-A2GT-06 6 70856589 70856589 G A COL19A1 Silent p.G603G 0.18 TCGA-EE-A2GT-06 6 75823424 75823424 C T COL12A1 Silent p.T2578T 0.30 TCGA-EE-A2GT-06 7 103029778 103029778 G A SLC26A5 Silent p.L469L 0.25 TCGA-EE-A2GT-06 7 11468738 11468738 C T THSD7A Missense_Mutation p.A1027T 0.25 tolerated(0.12) possibly_damaging(0.564) TCGA-EE-A2GT-06 7 120613283 120613284 - G ING3 Frame_Shift_Ins p.C376Wfs*2 0.17 TCGA-EE-A2GT-06 7 131878935 131878935 G A PLXNA4 Silent p.I914I 0.19 TCGA-EE-A2GT-06 7 138602891 138602891 G A KIAA1549 Missense_Mutation p.S494F 0.36 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2GT-06 7 13946092 13946092 C T ETV1 Missense_Mutation p.G358D 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A2GT-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EE-A2GT-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.24 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2GT-06 7 146829450 146829450 C T CNTNAP2 Silent p.F399F 0.43 TCGA-EE-A2GT-06 7 150389789 150389789 G A GIMAP2 Missense_Mutation p.G139R 0.28 tolerated(1) benign(0.004) TCGA-EE-A2GT-06 7 150725644 150725644 A C ABCB8 Silent p.P14P 0.21 TCGA-EE-A2GT-06 7 18066521 18066521 G A PRPS1L1 Silent p.I295I 0.20 TCGA-EE-A2GT-06 7 26224889 26224889 G A NFE2L3 Missense_Mutation p.R524K 0.14 tolerated(1) benign(0.006) TCGA-EE-A2GT-06 7 26224890 26224890 G A NFE2L3 Silent p.R524R 0.13 TCGA-EE-A2GT-06 7 38305255 38305255 G A TRGC1 Missense_Mutation p.S9F 0.26 tolerated(0.12) probably_damaging(0.911) TCGA-EE-A2GT-06 7 38543259 38543259 C T AMPH Missense_Mutation p.A66T 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GT-06 7 44228684 44228684 C T GCK 5'UTR 0.22 TCGA-EE-A2GT-06 7 81591790 81591790 G A CACNA2D1 Silent p.L934L 0.19 TCGA-EE-A2GT-06 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.16 unknown(0) TCGA-EE-A2GT-06 7 86825930 86825937 TAAGTACT - TMEM243 3'UTR 0.13 TCGA-EE-A2GT-06 7 925732 925732 C T GET4 Silent p.L65L 0.30 TCGA-EE-A2GT-06 7 94050342 94050342 C T COL1A2 Missense_Mutation p.P773S 0.21 unknown(0) TCGA-EE-A2GT-06 7 99097265 99097265 G A ZNF394 Missense_Mutation p.S151F 0.18 deleterious(0.02) benign(0.055) TCGA-EE-A2GT-06 7 99129273 99129273 G A ZKSCAN5 Missense_Mutation p.G641S 0.31 tolerated(0.5) benign(0.422) TCGA-EE-A2GT-06 8 101165646 101165646 C T POLR2K 3'UTR 0.22 TCGA-EE-A2GT-06 8 105260938 105260938 C T RIMS2 Silent p.F1162F 0.21 TCGA-EE-A2GT-06 8 110100269 110100269 G A TRHR Silent p.V176V 0.16 TCGA-EE-A2GT-06 8 113277712 113277712 C T CSMD3 Missense_Mutation p.E3206K 0.19 deleterious(0.02) possibly_damaging(0.88) TCGA-EE-A2GT-06 8 113323316 113323316 G A CSMD3 Silent p.V2592V 0.25 TCGA-EE-A2GT-06 8 124221848 124221848 G A FAM83A 3'UTR 0.31 TCGA-EE-A2GT-06 8 143623570 143623570 C G BAI1 Missense_Mutation p.I1325M 0.26 tolerated(0.07) benign(0.34) TCGA-EE-A2GT-06 8 144697003 144697003 G A TSTA3 Missense_Mutation p.T115I 0.21 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GT-06 8 145537654 145537654 G A HSF1 Missense_Mutation p.E441K 0.45 tolerated(0.16) benign(0.026) TCGA-EE-A2GT-06 8 18257721 18257721 C T NAT2 Nonsense_Mutation p.Q70* 0.19 TCGA-EE-A2GT-06 8 22864685 22864685 G A RHOBTB2 Silent p.S331S 0.25 TCGA-EE-A2GT-06 8 22974621 22974621 G A TNFRSF10C 3'UTR 0.39 TCGA-EE-A2GT-06 8 23225580 23225580 G A LOXL2 Silent p.V95V 0.16 TCGA-EE-A2GT-06 8 24298538 24298538 C T ADAM7 5'Flank 0.24 TCGA-EE-A2GT-06 8 24810312 24810312 G A CTD-2168K21.2 5'Flank 0.14 TCGA-EE-A2GT-06 8 25766038 25766038 C T EBF2 Silent p.Q195Q 0.21 TCGA-EE-A2GT-06 8 38677795 38677795 C T TACC1 Silent p.L345L 0.24 TCGA-EE-A2GT-06 8 41655042 41655042 C A ANK1 Intron 0.15 TCGA-EE-A2GT-06 8 53073993 53073993 G A ST18 Silent p.F512F 0.22 TCGA-EE-A2GT-06 9 105767683 105767683 C T CYLC2 Missense_Mutation p.S257L 0.19 tolerated(0.28) unknown(0) TCGA-EE-A2GT-06 9 111643998 111643998 A G IKBKAP Silent p.P1111P 0.19 TCGA-EE-A2GT-06 9 111966002 111966002 C G EPB41L4B Missense_Mutation p.K629N 0.18 tolerated(0.08) benign(0.085) TCGA-EE-A2GT-06 9 112172549 112172549 C T PTPN3 Missense_Mutation p.G487E 0.19 tolerated(0.21) benign(0.06) TCGA-EE-A2GT-06 9 113509958 113509958 G A MUSK Missense_Mutation p.R264Q 0.25 tolerated(0.18) possibly_damaging(0.862) TCGA-EE-A2GT-06 9 118949582 118949583 CG - PAPPA Frame_Shift_Del p.R189Qfs*15 0.09 TCGA-EE-A2GT-06 9 125424008 125424008 A C OR1L1 Missense_Mutation p.N5T 0.12 deleterious(0) benign(0.15) TCGA-EE-A2GT-06 9 125512249 125512249 G A OR1L6 Silent p.V41V 0.13 TCGA-EE-A2GT-06 9 130580444 130580444 G A ENG Silent p.L547L 0.20 TCGA-EE-A2GT-06 9 131344997 131344997 C T SPTAN1 Missense_Mutation p.H559Y 0.23 tolerated(1) benign(0.039) TCGA-EE-A2GT-06 9 132584974 132584974 G A TOR1A Silent p.F110F 0.21 TCGA-EE-A2GT-06 9 134006221 134006221 C T NUP214 Missense_Mutation p.P221S 0.23 unknown(0) TCGA-EE-A2GT-06 9 135374979 135374979 C T C9orf171 Silent p.I208I 0.26 TCGA-EE-A2GT-06 9 137779172 137779172 G A FCN2 Missense_Mutation p.G285S 0.23 tolerated(0.44) benign(0.006) TCGA-EE-A2GT-06 9 140941904 140941904 G A CACNA1B Silent p.V1199V 0.28 TCGA-EE-A2GT-06 9 21166166 21166166 C T IFNA21 Missense_Mutation p.R149K 0.20 tolerated(0.09) benign(0.216) TCGA-EE-A2GT-06 9 21481111 21481111 C T IFNE Missense_Mutation p.D195N 0.17 tolerated_low_confidence(0.91) benign(0.006) TCGA-EE-A2GT-06 9 33385025 33385025 G A AQP7 Missense_Mutation p.S336F 0.12 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-EE-A2GT-06 9 34647856 34647856 G A GALT Silent p.S135S 0.18 TCGA-EE-A2GT-06 9 35066718 35066718 T C VCP Silent p.V133V 0.34 TCGA-EE-A2GT-06 9 35800763 35800763 C T NPR2 Missense_Mutation p.P426S 0.32 tolerated(0.08) benign(0) TCGA-EE-A2GT-06 9 39118086 39118086 C T CNTNAP3 Intron 0.22 TCGA-EE-A2GT-06 9 91077651 91077651 C T SPIN1 Silent p.L114L 0.13 TCGA-EE-A2GT-06 9 91653172 91653172 G A SHC3 Silent p.P464P 0.10 TCGA-EE-A2GT-06 9 94487018 94487018 G A ROR2 Silent p.A586A 0.19 TCGA-EE-A2GT-06 9 99589443 99589443 C T ZNF782 Missense_Mutation p.E55K 0.19 tolerated(0.08) benign(0.018) TCGA-EE-A2GT-06 X 100417919 100417919 C T CENPI Missense_Mutation p.P745L 0.45 deleterious(0) benign(0.17) TCGA-EE-A2GT-06 X 102333532 102333532 G A NXF3 Silent p.L469L 0.34 TCGA-EE-A2GT-06 X 107840644 107840644 G A COL4A5 Missense_Mutation p.G542E 0.34 unknown(0) TCGA-EE-A2GT-06 X 132351834 132351834 C T TFDP3 Missense_Mutation p.E152K 0.33 tolerated(0.19) benign(0.018) TCGA-EE-A2GT-06 X 148037975 148037975 C T AFF2 Silent p.N800N 0.44 TCGA-EE-A2GT-06 X 151092619 151092619 G A MAGEA4 Missense_Mutation p.M161I 0.41 tolerated(0.38) benign(0.001) TCGA-EE-A2GT-06 X 24229150 24229151 - TAGA ZFX Frame_Shift_Ins p.H694* 0.54 TCGA-EE-A2GT-06 X 43656391 43656391 G A MAOB Missense_Mutation p.S200L 0.37 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2GT-06 X 48457988 48457988 G A WDR13 Missense_Mutation p.V136M 0.50 tolerated(0.09) benign(0.085) TCGA-EE-A2GT-06 X 50053237 50053237 T C CCNB3 Missense_Mutation p.F690L 0.36 tolerated(0.47) benign(0.105) TCGA-EE-A2GT-06 X 54975519 54975519 C T PFKFB1 Missense_Mutation p.E328K 0.38 probably_damaging(1) TCGA-EE-A2GT-06 X 70099868 70099868 C T TEX11 Silent p.R58R 0.38 TCGA-EE-A2GT-06 X 73962509 73962509 C T KIAA2022 Missense_Mutation p.R628Q 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2GT-06 X 83116169 83116169 A T CYLC1 5'UTR 0.52 TCGA-EE-A2GU-06 10 104176318 104176318 G A PSD Missense_Mutation p.P160S 0.40 tolerated_low_confidence(0.29) probably_damaging(0.996) TCGA-EE-A2GU-06 10 112642835 112642835 C T PDCD4 Missense_Mutation p.P141S 0.47 deleterious(0) probably_damaging(0.961) TCGA-EE-A2GU-06 10 12867821 12867821 G A CAMK1D Intron 0.28 TCGA-EE-A2GU-06 10 18837064 18837064 G A NSUN6 Missense_Mutation p.P392S 0.25 tolerated(0.05) probably_damaging(0.994) TCGA-EE-A2GU-06 10 21414888 21414888 G A C10orf113 Missense_Mutation p.P111L 0.30 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2GU-06 10 28233217 28233217 G A ARMC4 Silent p.I559I 0.23 TCGA-EE-A2GU-06 10 28409259 28409259 C T MPP7 Missense_Mutation p.E251K 0.16 deleterious(0) possibly_damaging(0.783) TCGA-EE-A2GU-06 10 34688294 34688294 C T PARD3 Missense_Mutation p.G285E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 10 50944552 50944552 G A OGDHL Missense_Mutation p.R869W 0.41 tolerated(0.19) probably_damaging(0.999) TCGA-EE-A2GU-06 10 5254973 5254973 C T AKR1C4 Missense_Mutation p.P233S 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A2GU-06 10 52573757 52573757 C T A1CF Missense_Mutation p.A403T 0.34 tolerated(0.08) benign(0.046) TCGA-EE-A2GU-06 10 5948180 5948180 C T FBXO18 Missense_Mutation p.S164L 0.35 tolerated(0.15) benign(0.045) TCGA-EE-A2GU-06 10 69926172 69926172 C T MYPN Silent p.P574P 0.39 TCGA-EE-A2GU-06 10 89720876 89720876 G C PTEN Splice_Site p.X342_splice 0.07 TCGA-EE-A2GU-06 10 90703574 90703574 T C ACTA2 Missense_Mutation p.N117D 0.48 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-EE-A2GU-06 10 91192752 91192752 C T SLC16A12 3'UTR 0.31 TCGA-EE-A2GU-06 10 96707649 96707649 G A CYP2C9 Missense_Mutation p.E199K 0.37 tolerated(0.63) benign(0.004) TCGA-EE-A2GU-06 10 96708999 96708999 C T CYP2C9 Silent p.N259N 0.41 TCGA-EE-A2GU-06 10 98109564 98109564 C T OPALIN Missense_Mutation p.G31E 0.41 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2GU-06 11 100168359 100168359 C T CNTN5 Missense_Mutation p.P773S 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GU-06 11 101946634 101946634 G A C11orf70 Missense_Mutation p.E156K 0.31 tolerated(0.12) possibly_damaging(0.65) TCGA-EE-A2GU-06 11 102480670 102480670 G A MMP20 Silent p.F205F 0.22 TCGA-EE-A2GU-06 11 10787958 10787958 G A CTR9 Missense_Mutation p.R536H 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GU-06 11 117691305 117691305 G A FXYD2 Intron 0.50 TCGA-EE-A2GU-06 11 118773103 118773103 G A BCL9L Missense_Mutation p.P450L 0.54 benign(0.006) TCGA-EE-A2GU-06 11 118773104 118773104 G A BCL9L Missense_Mutation p.P450S 0.54 benign(0.004) TCGA-EE-A2GU-06 11 119103163 119103163 G A CBL Silent p.V67V 0.45 TCGA-EE-A2GU-06 11 121008170 121008170 C T TECTA Silent p.I994I 0.48 TCGA-EE-A2GU-06 11 12225819 12225819 C T MICAL2 Missense_Mutation p.P96L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 11 124189235 124189235 G A OR8D2 Missense_Mutation p.P287S 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GU-06 11 1298184 1298184 G A TOLLIP 3'UTR 0.27 TCGA-EE-A2GU-06 11 19955584 19955584 C G NAV2 Silent p.L621L 0.33 TCGA-EE-A2GU-06 11 3041483 3041483 G A CARS Silent p.P411P 0.24 TCGA-EE-A2GU-06 11 40136321 40136321 G A LRRC4C Missense_Mutation p.P508S 0.34 tolerated(0.14) benign(0.408) TCGA-EE-A2GU-06 11 4389432 4389432 G A OR52B4 Missense_Mutation p.P32S 0.42 deleterious(0.02) possibly_damaging(0.45) TCGA-EE-A2GU-06 11 48285898 48285898 C T OR4X1 Silent p.F162F 0.22 TCGA-EE-A2GU-06 11 4842792 4842792 C T OR51F2 Silent p.I59I 0.31 TCGA-EE-A2GU-06 11 4842868 4842868 C T OR51F2 Silent p.L85L 0.28 TCGA-EE-A2GU-06 11 48511046 48511046 C T OR4A47 Silent p.A234A 0.32 TCGA-EE-A2GU-06 11 4869499 4869499 A G OR51S1 Silent p.L314L 0.33 TCGA-EE-A2GU-06 11 49227623 49227623 A G FOLH1 Silent p.L74L 0.34 TCGA-EE-A2GU-06 11 49598212 49598212 T C RP11-707M1.1 RNA 0.39 TCGA-EE-A2GU-06 11 49974176 49974176 G A OR4C13 Missense_Mutation p.D68N 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2GU-06 11 5080058 5080058 C T OR52E2 Missense_Mutation p.R267Q 0.24 tolerated(0.36) benign(0.03) TCGA-EE-A2GU-06 11 5363907 5363907 G A OR51B5 Missense_Mutation p.P283L 0.26 deleterious(0.02) possibly_damaging(0.739) TCGA-EE-A2GU-06 11 5475249 5475249 C T OR51I2 Silent p.S177S 0.30 TCGA-EE-A2GU-06 11 55432636 55432636 C T OR4C6 5'UTR 0.34 TCGA-EE-A2GU-06 11 55541798 55541798 G A OR5D13 Silent p.R295R 0.30 TCGA-EE-A2GU-06 11 56086282 56086282 C T OR8K3 Missense_Mutation p.S167F 0.30 deleterious_low_confidence(0.03) benign(0.307) TCGA-EE-A2GU-06 11 57004345 57004345 C T APLNR Missense_Mutation p.G45D 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 11 57310192 57310192 G A SMTNL1 Missense_Mutation p.G44E 0.32 deleterious(0.01) benign(0.004) TCGA-EE-A2GU-06 11 58491920 58491920 G A GLYAT Missense_Mutation p.S17F 0.25 deleterious(0.01) benign(0.236) TCGA-EE-A2GU-06 11 5863129 5863129 C T OR52E6 5'Flank 0.21 TCGA-EE-A2GU-06 11 60703610 60703610 C T TMEM132A Missense_Mutation p.P769L 0.39 tolerated(0.75) possibly_damaging(0.757) TCGA-EE-A2GU-06 11 60886998 60886998 G A CD5 Silent p.R252R 0.31 TCGA-EE-A2GU-06 11 612716 612716 A G IRF7 Missense_Mutation p.C494R 0.30 tolerated(0.07) probably_damaging(0.923) TCGA-EE-A2GU-06 11 64939939 64939939 G A SPDYC Missense_Mutation p.G127S 0.28 deleterious(0.01) benign(0.253) TCGA-EE-A2GU-06 11 64985155 64985155 C T SLC22A20 RNA 0.36 TCGA-EE-A2GU-06 11 64985156 64985156 C T SLC22A20 RNA 0.35 TCGA-EE-A2GU-06 11 65315176 65315176 C T LTBP3 Missense_Mutation p.G655R 0.33 tolerated(0.46) benign(0.007) TCGA-EE-A2GU-06 11 65315177 65315177 C T LTBP3 Silent p.G654G 0.33 TCGA-EE-A2GU-06 11 65729230 65729230 G A SART1 5'UTR 0.46 TCGA-EE-A2GU-06 11 73681067 73681067 A G DNAJB13 Missense_Mutation p.K287E 0.29 deleterious(0) possibly_damaging(0.833) TCGA-EE-A2GU-06 11 76982221 76982221 G A GDPD4 Silent p.I118I 0.17 TCGA-EE-A2GU-06 11 82951905 82951905 A T ANKRD42 Missense_Mutation p.H347L 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2GU-06 11 8494745 8494745 G A STK33 Missense_Mutation p.P102S 0.26 deleterious(0) possibly_damaging(0.688) TCGA-EE-A2GU-06 11 89531591 89531591 C T TRIM49 Missense_Mutation p.G356S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 11 92087445 92087445 C T FAT3 Missense_Mutation p.P723S 0.28 probably_damaging(0.999) TCGA-EE-A2GU-06 11 99827607 99827607 C T CNTN5 Missense_Mutation p.S248F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 12 100219094 100219094 C T ANKS1B Missense_Mutation p.G70R 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 12 100453084 100453084 G A UHRF1BP1L Silent p.F657F 0.51 TCGA-EE-A2GU-06 12 104046342 104046342 G A STAB2 Silent p.E422E 0.36 TCGA-EE-A2GU-06 12 113496249 113496249 G A DTX1 Silent p.Q84Q 0.41 TCGA-EE-A2GU-06 12 113553068 113553068 C T RASAL1 Missense_Mutation p.M335I 0.43 tolerated(0.06) benign(0.002) TCGA-EE-A2GU-06 12 124826485 124826485 G A NCOR2 Missense_Mutation p.T1691I 0.41 probably_damaging(0.999) TCGA-EE-A2GU-06 12 129563237 129563237 C T TMEM132D Missense_Mutation p.E653K 0.39 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A2GU-06 12 130830321 130830321 C T PIWIL1 Nonsense_Mutation p.Q72* 0.30 TCGA-EE-A2GU-06 12 18573874 18573874 G A PIK3C2G Splice_Site p.X731_splice 0.42 TCGA-EE-A2GU-06 12 2690876 2690876 C T CACNA1C Silent p.L672L 0.42 TCGA-EE-A2GU-06 12 27573445 27573445 G A ARNTL2 Missense_Mutation p.D631N 0.56 tolerated(0.06) probably_damaging(1) TCGA-EE-A2GU-06 12 43837663 43837663 G A ADAMTS20 Missense_Mutation p.P741S 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2GU-06 12 4724844 4724844 G A AKAP3 3'UTR 0.59 TCGA-EE-A2GU-06 12 52681839 52681839 C T KRT81 Missense_Mutation p.E277K 0.38 deleterious(0.02) benign(0.262) TCGA-EE-A2GU-06 12 55524101 55524101 T A OR9K2 Silent p.I183I 0.51 TCGA-EE-A2GU-06 12 57626237 57626237 C T SHMT2 Missense_Mutation p.P199L 0.47 tolerated(0.15) possibly_damaging(0.55) TCGA-EE-A2GU-06 12 65634721 65634721 T C LEMD3 Missense_Mutation p.V720A 0.53 deleterious(0) probably_damaging(0.985) TCGA-EE-A2GU-06 12 6806658 6806658 G A PIANP Silent p.I106I 0.35 TCGA-EE-A2GU-06 12 6933632 6933632 G A GPR162 Missense_Mutation p.G190R 0.20 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A2GU-06 12 70983782 70983782 C T PTPRB Missense_Mutation p.G671E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 12 7528442 7528442 C T CD163L1 Missense_Mutation p.G847E 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A2GU-06 12 7528513 7528513 A T CD163L1 Missense_Mutation p.D823E 0.12 deleterious(0.03) possibly_damaging(0.874) TCGA-EE-A2GU-06 12 8212250 8212250 G A C3AR1 Missense_Mutation p.L178F 0.49 tolerated(0.7) benign(0.006) TCGA-EE-A2GU-06 12 8693455 8693455 C T CLEC4E 5'UTR 0.48 TCGA-EE-A2GU-06 12 91449444 91449444 C T KERA Silent p.R205R 0.44 TCGA-EE-A2GU-06 13 101289912 101289912 G A TMTC4 Silent p.T293T 0.26 TCGA-EE-A2GU-06 13 103698526 103698526 G A SLC10A2 Missense_Mutation p.S335L 0.40 tolerated(0.08) benign(0.001) TCGA-EE-A2GU-06 13 109707473 109707473 G A MYO16 Missense_Mutation p.R1021K 0.37 tolerated(0.22) benign(0.122) TCGA-EE-A2GU-06 13 114472075 114472075 G A TMEM255B Missense_Mutation p.G65D 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 13 23808834 23808834 G A SGCG Missense_Mutation p.E94K 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2GU-06 13 23906647 23906647 G A SACS Nonsense_Mutation p.Q3790* 0.31 TCGA-EE-A2GU-06 13 23912862 23912862 G A SACS Missense_Mutation p.S1718F 0.19 benign(0.001) TCGA-EE-A2GU-06 13 25453337 25453337 G A RNF17 Missense_Mutation p.E1596K 0.36 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2GU-06 13 31035424 31035424 A G HMGB1 3'UTR 0.26 TCGA-EE-A2GU-06 13 35684971 35684971 T A NBEA Missense_Mutation p.L620M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GU-06 13 41766536 41766536 G A KBTBD7 Missense_Mutation p.P620S 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2GU-06 13 52971369 52971369 G A THSD1 Missense_Mutation p.T340I 0.26 tolerated(1) benign(0) TCGA-EE-A2GU-06 13 93879743 93879743 C T GPC6 Missense_Mutation p.L12F 0.33 tolerated(0.14) possibly_damaging(0.849) TCGA-EE-A2GU-06 14 104026090 104026090 G A BAG5 3'UTR 0.25 TCGA-EE-A2GU-06 14 104642925 104642925 C T KIF26A Missense_Mutation p.S1267F 0.42 deleterious(0.05) benign(0.06) TCGA-EE-A2GU-06 14 105411703 105411703 G A AHNAK2 Missense_Mutation p.S3362F 0.42 probably_damaging(0.991) TCGA-EE-A2GU-06 14 105418651 105418651 A C AHNAK2 Missense_Mutation p.L1046R 0.41 possibly_damaging(0.731) TCGA-EE-A2GU-06 14 106091552 106091552 G A IGHG4 Silent p.F114F 0.46 TCGA-EE-A2GU-06 14 20019756 20019756 C T POTEM Silent p.K155K 0.18 TCGA-EE-A2GU-06 14 20215759 20215759 C T OR4Q3 Missense_Mutation p.S58F 0.12 deleterious(0.01) benign(0.098) TCGA-EE-A2GU-06 14 20345076 20345076 C T OR4K2 Missense_Mutation p.S217L 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 14 20502527 20502527 G A OR4K13 Missense_Mutation p.H131Y 0.28 deleterious(0.04) benign(0.021) TCGA-EE-A2GU-06 14 20665781 20665781 C T OR11G2 Missense_Mutation p.P96L 0.24 deleterious(0) benign(0.417) TCGA-EE-A2GU-06 14 21794283 21794283 C T RPGRIP1 Silent p.G887G 0.28 TCGA-EE-A2GU-06 14 22038755 22038755 C T OR10G3 Missense_Mutation p.G41R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 14 22111558 22111558 G A TRAV1-2 Silent p.E26E 0.23 TCGA-EE-A2GU-06 14 22280083 22280083 C T TRAV9-1 Missense_Mutation p.S91F 0.33 deleterious(0.02) benign(0.341) TCGA-EE-A2GU-06 14 22788987 22788987 C T TRAV41 Missense_Mutation p.S67F 0.39 tolerated(0.44) probably_damaging(0.955) TCGA-EE-A2GU-06 14 24787742 24787742 G A ADCY4 Silent p.S1038S 0.28 TCGA-EE-A2GU-06 14 34269586 34269586 C T NPAS3 Silent p.F691F 0.30 TCGA-EE-A2GU-06 14 51132229 51132229 G A SAV1 Missense_Mutation p.S68L 0.22 deleterious_low_confidence(0) possibly_damaging(0.722) TCGA-EE-A2GU-06 14 53118997 53118997 G A ERO1L Missense_Mutation p.S362L 0.25 deleterious(0.05) possibly_damaging(0.742) TCGA-EE-A2GU-06 14 75022267 75022267 G A LTBP2 Silent p.G320G 0.49 TCGA-EE-A2GU-06 14 75587839 75587839 T A NEK9 Nonsense_Mutation p.K146* 0.34 TCGA-EE-A2GU-06 14 94173080 94173080 C T UNC79 Nonsense_Mutation p.Q2403* 0.37 TCGA-EE-A2GU-06 15 23300123 23300123 T G HERC2P2 RNA 0.24 TCGA-EE-A2GU-06 15 31294925 31294925 G A TRPM1 Silent p.F1343F 0.24 TCGA-EE-A2GU-06 15 34109108 34109108 G A RYR3 Nonsense_Mutation p.W3516* 0.26 TCGA-EE-A2GU-06 15 35202393 35202393 G A AQR Missense_Mutation p.R536C 0.28 deleterious(0.03) possibly_damaging(0.743) TCGA-EE-A2GU-06 15 41745236 41745236 C T RTF1 Silent p.A149A 0.28 TCGA-EE-A2GU-06 15 41961893 41961893 C T MGA Silent p.P267P 0.27 TCGA-EE-A2GU-06 15 42373300 42373300 C T PLA2G4D Missense_Mutation p.G330E 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 15 43820842 43820842 G A MAP1A Missense_Mutation p.G2391R 0.35 probably_damaging(1) TCGA-EE-A2GU-06 15 45660331 45660331 G A GATM Silent p.F204F 0.27 TCGA-EE-A2GU-06 15 48063526 48063526 C T SEMA6D Silent p.V922V 0.22 TCGA-EE-A2GU-06 15 50254215 50254215 C T ATP8B4 Missense_Mutation p.E416K 0.29 tolerated(0.07) benign(0.065) TCGA-EE-A2GU-06 15 52498025 52498025 G A MYO5C Nonsense_Mutation p.Q1509* 0.29 TCGA-EE-A2GU-06 15 56993092 56993092 G A ZNF280D Intron 0.40 TCGA-EE-A2GU-06 15 59910965 59910965 C T GCNT3 Silent p.V176V 0.30 TCGA-EE-A2GU-06 15 62207918 62207918 C T VPS13C Missense_Mutation p.E2787K 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 15 73636054 73636054 G A HCN4 Missense_Mutation p.P294L 0.23 deleterious(0.01) benign(0.035) TCGA-EE-A2GU-06 15 75047346 75047346 G A CYP1A2 Missense_Mutation p.D490N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 15 75105204 75105204 G A LMAN1L Silent p.A3A 0.44 TCGA-EE-A2GU-06 15 84651708 84651708 G A ADAMTSL3 Missense_Mutation p.G1110R 0.23 deleterious(0.04) benign(0.109) TCGA-EE-A2GU-06 15 85383474 85383474 G A ALPK3 Missense_Mutation p.E524K 0.26 tolerated(0.06) benign(0.017) TCGA-EE-A2GU-06 15 85669540 85669540 C T PDE8A Missense_Mutation p.P730S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 15 88476264 88476264 C T NTRK3 Missense_Mutation p.G623E 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 15 99192797 99192797 C T IGF1R 5'UTR 0.24 TCGA-EE-A2GU-06 16 11859513 11859513 A C ZC3H7A Nonsense_Mutation p.Y517* 0.47 TCGA-EE-A2GU-06 16 23768523 23768523 T C CHP2 Missense_Mutation p.V139A 0.23 deleterious(0.02) possibly_damaging(0.447) TCGA-EE-A2GU-06 16 28925708 28925708 G A RABEP2 Missense_Mutation p.S248F 0.23 deleterious(0.02) benign(0.099) TCGA-EE-A2GU-06 16 30364908 30364908 G A CD2BP2 Nonsense_Mutation p.Q197* 0.44 TCGA-EE-A2GU-06 16 30456450 30456450 C T SEPHS2 Missense_Mutation p.R200Q 0.33 benign(0.148) TCGA-EE-A2GU-06 16 31152904 31152904 G A PRSS36 Missense_Mutation p.P596L 0.39 tolerated(0.21) benign(0.001) TCGA-EE-A2GU-06 16 31437462 31437462 C T ITGAD 3'UTR 0.50 TCGA-EE-A2GU-06 16 32077466 32077466 C T IGHV3OR16-9 Silent p.F27F 0.27 TCGA-EE-A2GU-06 16 46708511 46708511 C T VPS35 Missense_Mutation p.D326N 0.22 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2GU-06 16 48244997 48244997 G A ABCC11 Silent p.I490I 0.32 TCGA-EE-A2GU-06 16 50709816 50709816 C T SNX20 Silent p.L49L 0.28 TCGA-EE-A2GU-06 16 51175273 51175273 G A SALL1 Missense_Mutation p.S287F 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GU-06 16 53331032 53331032 C T CHD9 Missense_Mutation p.S1892F 0.25 possibly_damaging(0.844) TCGA-EE-A2GU-06 16 56623498 56623498 T G MT3 5'UTR 0.25 TCGA-EE-A2GU-06 16 57093400 57093400 C T NLRC5 Silent p.F1314F 0.15 TCGA-EE-A2GU-06 16 58538174 58538174 C T NDRG4 Nonsense_Mutation p.Q134* 0.32 TCGA-EE-A2GU-06 16 58549393 58549393 G A SETD6 5'UTR 0.50 TCGA-EE-A2GU-06 16 61851459 61851459 G A CDH8 Missense_Mutation p.H401Y 0.30 tolerated(0.5) possibly_damaging(0.666) TCGA-EE-A2GU-06 16 67681857 67681857 G A RLTPR Missense_Mutation p.S356N 0.54 tolerated(0.57) benign(0.001) TCGA-EE-A2GU-06 16 67991822 67991822 G A SLC12A4 Silent p.I158I 0.22 TCGA-EE-A2GU-06 16 68009732 68009732 G A DPEP3 Missense_Mutation p.P493L 0.26 deleterious_low_confidence(0.02) benign(0.234) TCGA-EE-A2GU-06 16 72107798 72107798 G A HPR Missense_Mutation p.G5R 0.26 tolerated_low_confidence(0.11) benign(0.02) TCGA-EE-A2GU-06 16 75268868 75268868 G A BCAR1 Silent p.F689F 0.35 TCGA-EE-A2GU-06 16 77398197 77398197 C T ADAMTS18 Missense_Mutation p.G287E 0.35 tolerated(0.64) benign(0.017) TCGA-EE-A2GU-06 16 7743345 7743345 G A RBFOX1 Intron 0.46 TCGA-EE-A2GU-06 16 84050753 84050753 G A SLC38A8 Silent p.F315F 0.45 TCGA-EE-A2GU-06 16 84872130 84872130 C T CRISPLD2 Missense_Mutation p.P10L 0.36 tolerated(0.2) benign(0.004) TCGA-EE-A2GU-06 16 88713214 88713214 A T CYBA Missense_Mutation p.L79Q 0.32 tolerated(0.59) benign(0.054) TCGA-EE-A2GU-06 16 88780099 88780099 C T CTU2 Silent p.P306P 0.27 TCGA-EE-A2GU-06 17 10351428 10351428 C T MYH4 Missense_Mutation p.E1558K 0.57 deleterious(0.01) benign(0.2) TCGA-EE-A2GU-06 17 10433037 10433037 C T MYH2 Silent p.E987E 0.55 TCGA-EE-A2GU-06 17 11894356 11894356 G A ZNF18 Missense_Mutation p.S171F 0.64 tolerated(0.27) benign(0.129) TCGA-EE-A2GU-06 17 1558786 1558786 G A PRPF8 Missense_Mutation p.R1949W 0.60 deleterious(0) possibly_damaging(0.891) TCGA-EE-A2GU-06 17 1657585 1657585 G A SERPINF2 Silent p.V411V 0.68 TCGA-EE-A2GU-06 17 16691342 16691342 G A CCDC144A 3'UTR 0.21 TCGA-EE-A2GU-06 17 16855861 16855861 G A TNFRSF13B Missense_Mutation p.S33F 0.26 tolerated(0.23) benign(0.045) TCGA-EE-A2GU-06 17 18682010 18682010 G A FBXW10 Missense_Mutation p.R853K 0.22 tolerated(0.31) possibly_damaging(0.867) TCGA-EE-A2GU-06 17 18682011 18682011 G A FBXW10 Silent p.R853R 0.21 TCGA-EE-A2GU-06 17 19480675 19480675 G A SLC47A1 Missense_Mutation p.D508N 0.25 tolerated(0.11) benign(0.006) TCGA-EE-A2GU-06 17 19645922 19645922 G A ALDH3A1 Missense_Mutation p.P139L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 17 2239792 2239792 G A TSR1 5'UTR 0.80 TCGA-EE-A2GU-06 17 32483592 32483592 G A ASIC2 5'UTR 0.39 TCGA-EE-A2GU-06 17 33443910 33443910 G A RAD51D Silent p.F97F 0.30 TCGA-EE-A2GU-06 17 33687322 33687322 G C SLFN11 Missense_Mutation p.P380A 0.05 tolerated(0.09) probably_damaging(0.958) TCGA-EE-A2GU-06 17 33770934 33770934 G A SLFN13 Missense_Mutation p.P358S 0.42 tolerated(1) benign(0.001) TCGA-EE-A2GU-06 17 33771717 33771717 G A SLFN13 Missense_Mutation p.P328L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 17 36483885 36483885 C T GPR179 Missense_Mutation p.G1856E 0.30 tolerated(0.45) benign(0.037) TCGA-EE-A2GU-06 17 39019761 39019761 G A KRT12 Silent p.I357I 0.26 TCGA-EE-A2GU-06 17 39726149 39726149 G A KRT9 Nonsense_Mutation p.Q282* 0.27 TCGA-EE-A2GU-06 17 39767645 39767645 G A KRT16 Silent p.I241I 0.39 TCGA-EE-A2GU-06 17 40271325 40271325 G A KAT2A Silent p.F337F 0.33 TCGA-EE-A2GU-06 17 41738450 41738450 C T MEOX1 Silent p.R151R 0.28 TCGA-EE-A2GU-06 17 42336638 42336638 C T SLC4A1 Missense_Mutation p.E257K 0.29 deleterious(0.03) benign(0.036) TCGA-EE-A2GU-06 17 47230265 47230265 C T B4GALNT2 Missense_Mutation p.P213S 0.15 deleterious(0) probably_damaging(0.96) TCGA-EE-A2GU-06 17 48546022 48546022 C T CHAD Silent p.E51E 0.23 TCGA-EE-A2GU-06 17 48546023 48546023 T A CHAD Missense_Mutation p.E51V 0.18 tolerated(0.14) probably_damaging(0.981) TCGA-EE-A2GU-06 17 5085600 5085600 G A ZNF594 Missense_Mutation p.P651L 0.56 deleterious(0.02) probably_damaging(1) TCGA-EE-A2GU-06 17 54428271 54428271 C T ANKFN1 Silent p.F114F 0.42 TCGA-EE-A2GU-06 17 61949558 61949558 C T CSH2 Silent p.K194K 0.30 TCGA-EE-A2GU-06 17 61995482 61995482 G A GH1 Silent p.I62I 0.27 TCGA-EE-A2GU-06 17 62018401 62018401 C T SCN4A Missense_Mutation p.M1747I 0.32 tolerated(0.28) benign(0.001) TCGA-EE-A2GU-06 17 62132152 62132152 G A ERN1 Missense_Mutation p.S570F 0.47 deleterious(0.04) benign(0.007) TCGA-EE-A2GU-06 17 62553739 62553739 G A SMURF2 Missense_Mutation p.S473F 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GU-06 17 71433893 71433893 G A SDK2 Missense_Mutation p.P329S 0.18 tolerated(0.05) probably_damaging(1) TCGA-EE-A2GU-06 17 72368061 72368061 G A GPR142 Silent p.L237L 0.24 TCGA-EE-A2GU-06 17 72436926 72436926 C T GPRC5C Silent p.F382F 0.36 TCGA-EE-A2GU-06 17 72584677 72584677 C T CD300LD Missense_Mutation p.V118I 0.24 tolerated(0.41) benign(0.059) TCGA-EE-A2GU-06 17 72832478 72832478 G A TMEM104 Silent p.K381K 0.38 TCGA-EE-A2GU-06 17 72877225 72877225 G A FADS6 Silent p.H233H 0.50 TCGA-EE-A2GU-06 17 74005265 74005265 C T EVPL Missense_Mutation p.A1341T 0.23 tolerated(0.34) benign(0.006) TCGA-EE-A2GU-06 17 76423064 76423064 C T DNAH17 Missense_Mutation p.M4261I 0.25 possibly_damaging(0.828) TCGA-EE-A2GU-06 17 77709387 77709387 C T ENPP7 Silent p.F315F 0.36 TCGA-EE-A2GU-06 17 79077448 79077448 C T BAIAP2 Silent p.S263S 0.20 TCGA-EE-A2GU-06 17 79650840 79650840 C T ARL16 Missense_Mutation p.G6R 0.32 deleterious_low_confidence(0) benign(0) TCGA-EE-A2GU-06 17 8784275 8784275 G A PIK3R5 Silent p.P814P 0.63 TCGA-EE-A2GU-06 18 13884968 13884968 G A MC2R Silent p.L184L 0.19 TCGA-EE-A2GU-06 18 14542924 14542924 C T POTEC Silent p.G74G 0.10 TCGA-EE-A2GU-06 18 21526119 21526119 C T LAMA3 Silent p.G3074G 0.15 TCGA-EE-A2GU-06 18 21735932 21735932 C T CABYR Missense_Mutation p.P156L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GU-06 18 28605749 28605749 G A DSC3 Missense_Mutation p.R203C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GU-06 18 28712551 28712551 C T DSC1 Missense_Mutation p.G740R 0.19 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GU-06 18 28970705 28970705 G A DSG4 Missense_Mutation p.E202K 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2GU-06 18 30804860 30804860 C T CCDC178 Missense_Mutation p.R566Q 0.31 tolerated(0.07) possibly_damaging(0.853) TCGA-EE-A2GU-06 18 32677441 32677441 C T MAPRE2 Silent p.L94L 0.32 TCGA-EE-A2GU-06 18 46645158 46645158 G A DYM Nonsense_Mutation p.R568* 0.37 TCGA-EE-A2GU-06 18 57103301 57103301 C T CCBE1 Missense_Mutation p.E354K 0.23 tolerated(0.05) benign(0.235) TCGA-EE-A2GU-06 18 580850 580850 G A CETN1 Missense_Mutation p.E148K 0.36 deleterious(0.01) possibly_damaging(0.737) TCGA-EE-A2GU-06 18 74154876 74154876 G A ZNF516 Silent p.F45F 0.44 TCGA-EE-A2GU-06 19 10092784 10092784 C T COL5A3 Missense_Mutation p.G806E 0.25 unknown(0) TCGA-EE-A2GU-06 19 10790583 10790583 C T ILF3 Missense_Mutation p.A280V 0.35 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2GU-06 19 11024645 11024645 C T CARM1 Silent p.I254I 0.24 TCGA-EE-A2GU-06 19 14765866 14765866 C T EMR3 Missense_Mutation p.E169K 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2GU-06 19 15769189 15769189 G A CYP4F3 Missense_Mutation p.G411S 0.28 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2GU-06 19 15905786 15905786 C T OR10H5 Missense_Mutation p.L310F 0.27 tolerated(0.45) benign(0.005) TCGA-EE-A2GU-06 19 17088187 17088187 G A CPAMD8 Silent p.F630F 0.38 TCGA-EE-A2GU-06 19 17267820 17267820 T G MYO9B Missense_Mutation p.V434G 0.27 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A2GU-06 19 19466529 19466529 C T MAU2 Missense_Mutation p.P594S 0.31 tolerated(0.12) benign(0.009) TCGA-EE-A2GU-06 19 19737823 19737823 G A LPAR2 Missense_Mutation p.H91Y 0.16 deleterious(0.03) probably_damaging(0.953) TCGA-EE-A2GU-06 19 20808398 20808398 G A ZNF626 Silent p.F95F 0.19 TCGA-EE-A2GU-06 19 22575475 22575475 C T ZNF98 Missense_Mutation p.E188K 0.43 deleterious(0.03) possibly_damaging(0.492) TCGA-EE-A2GU-06 19 22939400 22939400 G A ZNF99 3'Flank 0.25 TCGA-EE-A2GU-06 19 30106215 30106215 G T POP4 Silent p.G197G 0.28 TCGA-EE-A2GU-06 19 33406264 33406264 G A CEP89 Missense_Mutation p.S515L 0.28 deleterious(0.04) benign(0.003) TCGA-EE-A2GU-06 19 36051759 36051759 T G ATP4A Missense_Mutation p.T166P 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GU-06 19 36109915 36109915 C T HAUS5 Silent p.A381A 0.32 TCGA-EE-A2GU-06 19 37904182 37904182 G A ZNF569 Missense_Mutation p.H460Y 0.31 deleterious(0) probably_damaging(0.983) TCGA-EE-A2GU-06 19 38980829 38980829 C T RYR1 Silent p.R1976R 0.26 TCGA-EE-A2GU-06 19 39819590 39819590 G A GMFG Intron 0.34 TCGA-EE-A2GU-06 19 39914071 39914071 G A PLEKHG2 Missense_Mutation p.D793N 0.25 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-EE-A2GU-06 19 39915878 39915878 G A PLEKHG2 Missense_Mutation p.E1369K 0.25 tolerated_low_confidence(0.2) benign(0.018) TCGA-EE-A2GU-06 19 40411717 40411717 C T FCGBP Missense_Mutation p.R1304Q 0.19 benign(0.183) TCGA-EE-A2GU-06 19 41454997 41454997 A T AC092071.1 3'Flank 0.25 TCGA-EE-A2GU-06 19 41700509 41700509 G A CYP2S1 Missense_Mutation p.V80I 0.25 tolerated(0.09) benign(0.317) TCGA-EE-A2GU-06 19 42231166 42231166 C T CEACAM5 Missense_Mutation p.S680F 0.32 tolerated(0.08) benign(0.396) TCGA-EE-A2GU-06 19 42474402 42474402 G A ATP1A3 Missense_Mutation p.P839L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 19 42840432 42840432 C T MEGF8 Missense_Mutation p.S393F 0.28 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2GU-06 19 42860510 42860510 C A MEGF8 Missense_Mutation p.H1442Q 0.31 tolerated(0.44) benign(0.113) TCGA-EE-A2GU-06 19 43233381 43233381 G A PSG3 Silent p.L379L 0.29 TCGA-EE-A2GU-06 19 43269695 43269705 GATGCGCTGTG AATGTGCTGCA PSG8 Missense_Mutation p.TQR10MQH 0.30 TCGA-EE-A2GU-06 19 44276176 44276176 G A KCNN4 Silent p.I265I 0.29 TCGA-EE-A2GU-06 19 44610703 44610703 C T ZNF224 Silent p.F130F 0.26 TCGA-EE-A2GU-06 19 45208946 45208946 C T CEACAM16 Silent p.L250L 0.31 TCGA-EE-A2GU-06 19 46003763 46003763 G A PPM1N Silent p.R369R 0.26 TCGA-EE-A2GU-06 19 46299080 46299080 G A RSPH6A 3'UTR 0.23 TCGA-EE-A2GU-06 19 4793311 4793311 C T FEM1A Missense_Mutation p.P482L 0.36 tolerated(0.27) benign(0.001) TCGA-EE-A2GU-06 19 49120620 49120620 A G RPL18 Silent p.L51L 0.29 TCGA-EE-A2GU-06 19 49705305 49705305 C T TRPM4 Missense_Mutation p.S1013F 0.36 deleterious(0.01) possibly_damaging(0.845) TCGA-EE-A2GU-06 19 50245250 50245250 G A TSKS Silent p.S463S 0.27 TCGA-EE-A2GU-06 19 50390828 50390828 G A TBC1D17 Missense_Mutation p.E514K 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GU-06 19 51132550 51132550 C T SYT3 Splice_Site p.X427_splice 0.35 TCGA-EE-A2GU-06 19 52001430 52001430 C T SIGLEC12 Missense_Mutation p.G416E 0.27 tolerated(0.1) possibly_damaging(0.679) TCGA-EE-A2GU-06 19 52131203 52131203 G A SIGLEC5 Missense_Mutation p.S294F 0.29 tolerated(0.24) benign(0.337) TCGA-EE-A2GU-06 19 52327420 52327420 G A FPR3 Missense_Mutation p.S140N 0.37 tolerated(0.17) benign(0.071) TCGA-EE-A2GU-06 19 53014213 53014213 C T ZNF578 Silent p.S193S 0.35 TCGA-EE-A2GU-06 19 54198487 54198487 G A MIR519B RNA 0.33 TCGA-EE-A2GU-06 19 54327215 54327215 A G NLRP12 Silent p.L72L 0.33 TCGA-EE-A2GU-06 19 54940485 54940485 G C TTYH1 Silent p.V245V 0.28 TCGA-EE-A2GU-06 19 55179409 55179409 C T LILRB4 Missense_Mutation p.P429L 0.27 tolerated(0.29) possibly_damaging(0.878) TCGA-EE-A2GU-06 19 55341405 55341405 G A KIR3DL1 Silent p.E376E 0.30 TCGA-EE-A2GU-06 19 56321367 56321367 G A NLRP11 Silent p.I203I 0.38 TCGA-EE-A2GU-06 19 56515201 56515201 C T NLRP5 Missense_Mutation p.S61F 0.24 deleterious(0) probably_damaging(0.99) TCGA-EE-A2GU-06 19 57325354 57325354 C T PEG3 Missense_Mutation p.G1486R 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2GU-06 19 57328195 57328195 C T PEG3 Missense_Mutation p.E539K 0.26 deleterious(0.02) benign(0.184) TCGA-EE-A2GU-06 19 57640569 57640569 G A USP29 Missense_Mutation p.D176N 0.32 tolerated(0.54) benign(0.002) TCGA-EE-A2GU-06 19 57956182 57956182 T C ZNF749 Missense_Mutation p.Y556H 0.33 deleterious(0) probably_damaging(0.968) TCGA-EE-A2GU-06 19 6466876 6466876 G A CRB3 Intron 0.29 TCGA-EE-A2GU-06 19 6664875 6664875 C T TNFSF14 3'UTR 0.34 TCGA-EE-A2GU-06 19 6854012 6854012 G A VAV1 Missense_Mutation p.R796Q 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 19 6901952 6901952 A G EMR1 Missense_Mutation p.N194S 0.25 tolerated(1) benign(0.003) TCGA-EE-A2GU-06 19 6981158 6981158 C T EMR4P RNA 0.25 TCGA-EE-A2GU-06 19 7518408 7518408 C T ARHGEF18 Silent p.I449I 0.37 TCGA-EE-A2GU-06 19 7830144 7830144 C T CLEC4M Silent p.I68I 0.32 TCGA-EE-A2GU-06 19 8206852 8206852 G A FBN3 Silent p.I237I 0.35 TCGA-EE-A2GU-06 19 8976783 8976783 C T MUC16 Missense_Mutation p.G14095S 0.24 probably_damaging(0.973) TCGA-EE-A2GU-06 19 8993392 8993392 C T MUC16 Silent p.R13899R 0.26 TCGA-EE-A2GU-06 19 9005651 9005651 C T MUC16 Missense_Mutation p.R13252K 0.22 probably_damaging(0.995) TCGA-EE-A2GU-06 19 9059777 9059777 C T MUC16 Silent p.L9223L 0.28 TCGA-EE-A2GU-06 19 9064452 9064452 G A MUC16 Missense_Mutation p.S7665F 0.30 unknown(0) TCGA-EE-A2GU-06 19 9070263 9070263 G A MUC16 Missense_Mutation p.S5728F 0.33 unknown(0) TCGA-EE-A2GU-06 19 9083416 9083416 C T MUC16 Missense_Mutation p.G2800E 0.40 unknown(0) TCGA-EE-A2GU-06 19 9083906 9083906 C T MUC16 Missense_Mutation p.G2637R 0.24 unknown(0) TCGA-EE-A2GU-06 19 9084779 9084779 C T MUC16 Missense_Mutation p.E2346K 0.36 unknown(0) TCGA-EE-A2GU-06 1 1119384 1119384 G A TTLL10 Missense_Mutation p.M391I 0.33 tolerated(0.05) possibly_damaging(0.53) TCGA-EE-A2GU-06 1 111963975 111963975 C T OVGP1 Missense_Mutation p.G276R 0.26 tolerated(0.07) benign(0.423) TCGA-EE-A2GU-06 1 11316081 11316081 G A MTOR Missense_Mutation p.P225S 0.39 tolerated(0.77) benign(0.004) TCGA-EE-A2GU-06 1 114524268 114524268 C T OLFML3 Silent p.P366P 0.26 TCGA-EE-A2GU-06 1 114524269 114524269 C T OLFML3 Missense_Mutation p.R367C 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2GU-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.31 deleterious(0.01) benign(0.045) TCGA-EE-A2GU-06 1 11576105 11576105 C T PTCHD2 Missense_Mutation p.H546Y 0.33 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A2GU-06 1 120337285 120337285 C T REG4 Missense_Mutation p.E145K 0.31 tolerated(0.41) benign(0.153) TCGA-EE-A2GU-06 1 12066609 12066609 C T MFN2 Silent p.I577I 0.18 TCGA-EE-A2GU-06 1 12337566 12337566 G A VPS13D Missense_Mutation p.M1307I 0.34 possibly_damaging(0.78) TCGA-EE-A2GU-06 1 12368579 12368579 G A VPS13D Silent p.K2177K 0.26 TCGA-EE-A2GU-06 1 12837257 12837257 G A PRAMEF12 Missense_Mutation p.E323K 0.33 tolerated(0.41) probably_damaging(0.953) TCGA-EE-A2GU-06 1 12919569 12919569 G A PRAMEF2 Silent p.L103L 0.31 TCGA-EE-A2GU-06 1 12954681 12954681 C T PRAMEF10 Missense_Mutation p.R201K 0.29 tolerated(0.13) benign(0.003) TCGA-EE-A2GU-06 1 13001293 13001293 C T PRAMEF6 Silent p.R130R 0.11 TCGA-EE-A2GU-06 1 145367791 145367791 G A NBPF10 Missense_Mutation p.G3463R 0.33 probably_damaging(0.92) TCGA-EE-A2GU-06 1 149895856 149895856 G A SF3B4 Missense_Mutation p.P322S 0.15 tolerated(0.06) unknown(0) TCGA-EE-A2GU-06 1 150471505 150471505 G A TARS2 Missense_Mutation p.E512K 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 1 152059674 152059674 C T TCHHL1 Missense_Mutation p.E162K 0.19 deleterious(0.03) benign(0.07) TCGA-EE-A2GU-06 1 152085305 152085305 C T TCHH Missense_Mutation p.E130K 0.24 unknown(0) TCGA-EE-A2GU-06 1 152648614 152648614 C T LCE2C Silent p.F41F 0.45 TCGA-EE-A2GU-06 1 152681714 152681714 G A LCE4A Missense_Mutation p.G55R 0.23 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2GU-06 1 152784987 152784987 C T LCE1B Missense_Mutation p.P22L 0.25 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2GU-06 1 154026785 154026785 C T NUP210L Silent p.G1134G 0.40 TCGA-EE-A2GU-06 1 154090314 154090314 C T NUP210L Missense_Mutation p.E503K 0.48 tolerated(0.29) benign(0.354) TCGA-EE-A2GU-06 1 154744721 154744721 G A KCNN3 Missense_Mutation p.S393F 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2GU-06 1 155429661 155429661 G A ASH1L Silent p.S1671S 0.33 TCGA-EE-A2GU-06 1 156813996 156813996 A C INSRR Silent p.A938A 0.17 TCGA-EE-A2GU-06 1 157556241 157556241 G A FCRL4 Silent p.I284I 0.44 TCGA-EE-A2GU-06 1 158326480 158326480 C T CD1E Intron 0.27 TCGA-EE-A2GU-06 1 158326481 158326481 C T CD1E Intron 0.28 TCGA-EE-A2GU-06 1 158670443 158670443 C T OR6K2 5'UTR 0.21 TCGA-EE-A2GU-06 1 158725296 158725296 G T OR6K6 Missense_Mutation p.A231S 0.24 tolerated(0.21) benign(0.369) TCGA-EE-A2GU-06 1 158815488 158815488 C G MNDA Missense_Mutation p.P228A 0.43 tolerated(0.1) benign(0.027) TCGA-EE-A2GU-06 1 159169545 159169545 C T CADM3 Silent p.P353P 0.22 TCGA-EE-A2GU-06 1 159799733 159799733 C T SLAMF8 Missense_Mutation p.P40S 0.49 deleterious(0.03) possibly_damaging(0.521) TCGA-EE-A2GU-06 1 160648920 160648920 G A CD48 Silent p.A218A 0.25 TCGA-EE-A2GU-06 1 160769730 160769730 G A LY9 Silent p.L104L 0.50 TCGA-EE-A2GU-06 1 16111220 16111220 C T FBLIM1 3'UTR 0.26 TCGA-EE-A2GU-06 1 161970012 161970012 C T OLFML2B Silent p.Q280Q 0.37 TCGA-EE-A2GU-06 1 16355734 16355734 G A CLCNKA Nonsense_Mutation p.W389* 0.27 TCGA-EE-A2GU-06 1 167059496 167059496 C T GPA33 Nonsense_Mutation p.W10* 0.32 TCGA-EE-A2GU-06 1 16736178 16736178 C T SPATA21 Missense_Mutation p.G169S 0.39 tolerated(0.18) benign(0.003) TCGA-EE-A2GU-06 1 169390915 169390915 G A CCDC181 Missense_Mutation p.P252S 0.43 tolerated(0.71) benign(0.015) TCGA-EE-A2GU-06 1 175328850 175328850 C T TNR Missense_Mutation p.D958N 0.50 tolerated(0.26) benign(0.005) TCGA-EE-A2GU-06 1 176675571 176675571 G A PAPPA2 Missense_Mutation p.G1148S 0.14 tolerated(0.27) possibly_damaging(0.452) TCGA-EE-A2GU-06 1 176681030 176681030 C T PAPPA2 Silent p.P1237P 0.23 TCGA-EE-A2GU-06 1 176837956 176837956 G A ASTN1 Intron 0.30 TCGA-EE-A2GU-06 1 177250510 177250510 C T BRINP2 Missense_Mutation p.P733L 0.21 tolerated(0.12) probably_damaging(0.997) TCGA-EE-A2GU-06 1 178412129 178412129 C T RASAL2 Missense_Mutation p.P416L 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2GU-06 1 181754921 181754921 C T CACNA1E Silent p.L1918L 0.45 TCGA-EE-A2GU-06 1 182845222 182845222 C T DHX9 Missense_Mutation p.P618L 0.20 tolerated(0.4) benign(0.01) TCGA-EE-A2GU-06 1 183204779 183204779 C T LAMC2 Silent p.L790L 0.45 TCGA-EE-A2GU-06 1 190424010 190424010 C T BRINP3 Missense_Mutation p.R4Q 0.40 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A2GU-06 1 19439325 19439325 C T UBR4 Missense_Mutation p.D3832N 0.31 probably_damaging(0.956) TCGA-EE-A2GU-06 1 197404165 197404165 G A CRB1 Missense_Mutation p.E1058K 0.19 tolerated(0.7) benign(0.011) TCGA-EE-A2GU-06 1 201195161 201195161 G A IGFN1 Missense_Mutation p.E3566K 0.21 possibly_damaging(0.709) TCGA-EE-A2GU-06 1 201353961 201353961 C T LAD1 Missense_Mutation p.M378I 0.49 deleterious(0.01) benign(0.284) TCGA-EE-A2GU-06 1 202283943 202283943 G A LGR6 Silent p.L527L 0.43 TCGA-EE-A2GU-06 1 203025567 203025567 C T PPFIA4 Missense_Mutation p.P218L 0.48 deleterious(0) benign(0.431) TCGA-EE-A2GU-06 1 204093858 204093858 C T SOX13 Missense_Mutation p.P489S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 1 204197305 204197305 C T PLEKHA6 Silent p.Q979Q 0.19 TCGA-EE-A2GU-06 1 204949559 204949559 C T NFASC Silent p.I746I 0.52 TCGA-EE-A2GU-06 1 205819130 205819130 C T PM20D1 Missense_Mutation p.R24K 0.40 tolerated(0.18) benign(0.004) TCGA-EE-A2GU-06 1 206634486 206634486 C T SRGAP2 Silent p.P893P 0.20 TCGA-EE-A2GU-06 1 206658624 206658624 C T IKBKE Nonsense_Mutation p.Q533* 0.15 TCGA-EE-A2GU-06 1 207789995 207789995 G A CR1 Missense_Mutation p.G2246E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 1 209803960 209803960 T C LAMB3 Missense_Mutation p.R315G 0.21 deleterious(0.03) benign(0.005) TCGA-EE-A2GU-06 1 211846988 211846988 C T NEK2 Missense_Mutation p.S131N 0.19 tolerated(0.2) benign(0) TCGA-EE-A2GU-06 1 215848664 215848664 C T USH2A Missense_Mutation p.G4197R 0.10 benign(0.016) TCGA-EE-A2GU-06 1 216373145 216373145 G A USH2A Missense_Mutation p.P1212L 0.30 probably_damaging(0.999) TCGA-EE-A2GU-06 1 228491481 228491481 G A OBSCN Missense_Mutation p.R4615Q 0.36 possibly_damaging(0.857) TCGA-EE-A2GU-06 1 228491482 228491482 G A OBSCN Silent p.R4615R 0.36 TCGA-EE-A2GU-06 1 229568416 229568416 G A ACTA1 Missense_Mutation p.P114L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EE-A2GU-06 1 230979542 230979542 G A C1orf198 Missense_Mutation p.S162F 0.33 deleterious(0.04) benign(0.389) TCGA-EE-A2GU-06 1 233275579 233275579 G A PCNXL2 Silent p.F1180F 0.70 TCGA-EE-A2GU-06 1 233296092 233296092 G A PCNXL2 Missense_Mutation p.P1152S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 1 233511738 233511738 G A MLK4 Silent p.R584R 0.16 TCGA-EE-A2GU-06 1 233515097 233515097 C T MLK4 Missense_Mutation p.S782F 0.18 tolerated(0.78) benign(0.316) TCGA-EE-A2GU-06 1 233807082 233807082 C T KCNK1 Silent p.L273L 0.15 TCGA-EE-A2GU-06 1 234367213 234367213 G A SLC35F3 Missense_Mutation p.A112T 0.32 tolerated(0.5) benign(0.009) TCGA-EE-A2GU-06 1 234454656 234454656 G A SLC35F3 Missense_Mutation p.G372R 0.36 tolerated(0.06) benign(0.055) TCGA-EE-A2GU-06 1 235346091 235346091 C T ARID4B Missense_Mutation p.E715K 0.56 deleterious(0) benign(0.19) TCGA-EE-A2GU-06 1 236902833 236902833 G A ACTN2 Splice_Site p.X369_splice 0.21 TCGA-EE-A2GU-06 1 247587738 247587738 C T NLRP3 Silent p.L331L 0.21 TCGA-EE-A2GU-06 1 248263173 248263173 C T OR2L13 Missense_Mutation p.P166S 0.58 tolerated(0.1) benign(0.219) TCGA-EE-A2GU-06 1 34208985 34208985 C T CSMD2 Missense_Mutation p.G650E 0.41 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GU-06 1 35227260 35227260 C T GJB4 Silent p.L135L 0.33 TCGA-EE-A2GU-06 1 3699293 3699293 G A LRRC47 Missense_Mutation p.P449S 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GU-06 1 38343860 38343860 C T INPP5B Silent p.G559G 0.17 TCGA-EE-A2GU-06 1 40126934 40126934 C T NT5C1A Silent p.G186G 0.24 TCGA-EE-A2GU-06 1 42048421 42048421 G A HIVEP3 Missense_Mutation p.P683L 0.33 benign(0.002) TCGA-EE-A2GU-06 1 44056778 44056778 C T PTPRF Missense_Mutation p.P362L 0.33 tolerated(0.26) benign(0.013) TCGA-EE-A2GU-06 1 45120814 45120814 G A TMEM53 Missense_Mutation p.P84L 0.27 tolerated(0.09) possibly_damaging(0.777) TCGA-EE-A2GU-06 1 45294218 45294218 G A PTCH2 Missense_Mutation p.A517V 0.35 deleterious(0.04) benign(0.167) TCGA-EE-A2GU-06 1 57161734 57161734 C T PRKAA2 Silent p.V230V 0.31 TCGA-EE-A2GU-06 1 57202799 57202799 A T C1orf168 Missense_Mutation p.I585N 0.21 deleterious(0) possibly_damaging(0.581) TCGA-EE-A2GU-06 1 57257889 57257889 G A C1orf168 Silent p.H199H 0.28 TCGA-EE-A2GU-06 1 57258104 57258104 C T C1orf168 Missense_Mutation p.E128K 0.35 tolerated(0.34) benign(0.046) TCGA-EE-A2GU-06 1 57333298 57333298 G A C8A Missense_Mutation p.A32T 0.21 tolerated(0.53) benign(0.055) TCGA-EE-A2GU-06 1 61554224 61554224 G A NFIA Missense_Mutation p.S189N 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GU-06 1 75038269 75038269 C T C1orf173 Missense_Mutation p.R1042K 0.22 tolerated(0.83) benign(0.003) TCGA-EE-A2GU-06 1 79002193 79002193 C T PTGFR Missense_Mutation p.P301S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 1 79357242 79357242 G A ELTD1 Silent p.F659F 0.30 TCGA-EE-A2GU-06 1 93646302 93646302 G A CCDC18 Missense_Mutation p.G8E 0.31 deleterious_low_confidence(0) benign(0.005) TCGA-EE-A2GU-06 1 94956753 94956753 C T ABCD3 Missense_Mutation p.P446S 0.33 deleterious(0) probably_damaging(0.988) TCGA-EE-A2GU-06 1 94956754 94956754 C T ABCD3 Missense_Mutation p.P446L 0.32 deleterious(0) probably_damaging(0.994) TCGA-EE-A2GU-06 20 10621857 10621857 C T JAG1 Silent p.R984R 0.24 TCGA-EE-A2GU-06 20 1592244 1592244 G A SIRPB1 Intron 0.21 TCGA-EE-A2GU-06 20 1592245 1592245 G A SIRPB1 Intron 0.20 TCGA-EE-A2GU-06 20 16354938 16354938 G C KIF16B Missense_Mutation p.A1105G 0.29 tolerated_low_confidence(0.43) benign(0.007) TCGA-EE-A2GU-06 20 18464239 18464239 A T POLR3F 3'UTR 0.30 TCGA-EE-A2GU-06 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.48 deleterious_low_confidence(0) benign(0.022) TCGA-EE-A2GU-06 20 2308917 2308917 C T TGM3 Silent p.S413S 0.16 TCGA-EE-A2GU-06 20 2375937 2375937 G A TGM6 Missense_Mutation p.M93I 0.36 tolerated(0.15) benign(0.102) TCGA-EE-A2GU-06 20 2552872 2552872 G A TMC2 Missense_Mutation p.G201E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 20 3208477 3208477 C T SLC4A11 Missense_Mutation p.E905K 0.27 deleterious(0.04) benign(0.3) TCGA-EE-A2GU-06 20 33329993 33329993 A G NCOA6 Missense_Mutation p.L1356P 0.52 possibly_damaging(0.864) TCGA-EE-A2GU-06 20 33875226 33875226 G A FAM83C Silent p.L452L 0.47 TCGA-EE-A2GU-06 20 34090217 34090217 G T CEP250 Splice_Site p.X1341_splice 0.08 TCGA-EE-A2GU-06 20 3672569 3672569 G A SIGLEC1 Silent p.I1437I 0.17 TCGA-EE-A2GU-06 20 40709389 40709389 C T PTPRT 3'UTR 0.36 TCGA-EE-A2GU-06 20 40710567 40710567 G A PTPRT Silent p.I1409I 0.28 TCGA-EE-A2GU-06 20 43851696 43851696 G A SEMG2 Missense_Mutation p.E475K 0.16 tolerated(0.21) unknown(0) TCGA-EE-A2GU-06 20 44168034 44168034 C T WFDC6 Missense_Mutation p.G5R 0.47 tolerated(0.09) benign(0.032) TCGA-EE-A2GU-06 20 47881295 47881295 G A ZNFX1 Silent p.F703F 0.24 TCGA-EE-A2GU-06 20 47990100 47990100 G A KCNB1 Missense_Mutation p.P666L 0.22 deleterious_low_confidence(0) benign(0.36) TCGA-EE-A2GU-06 20 50287714 50287714 G A ATP9A Missense_Mutation p.R374C 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GU-06 20 57768949 57768949 G A ZNF831 Missense_Mutation p.G959R 0.20 tolerated(0.18) benign(0.024) TCGA-EE-A2GU-06 21 30693751 30693751 C T BACH1 Silent p.S50S 0.24 TCGA-EE-A2GU-06 21 32496914 32496914 G T TIAM1 Missense_Mutation p.S1411Y 0.24 deleterious(0) benign(0.406) TCGA-EE-A2GU-06 21 33749573 33749573 G A URB1 Intron 0.21 TCGA-EE-A2GU-06 21 33982302 33982302 T C AP000275.65 Silent p.L51L 0.34 TCGA-EE-A2GU-06 21 34668534 34668534 C T IL10RB Missense_Mutation p.P284S 0.20 tolerated(0.07) benign(0.045) TCGA-EE-A2GU-06 21 34668535 34668535 C T IL10RB Missense_Mutation p.P284L 0.21 tolerated(0.08) benign(0.08) TCGA-EE-A2GU-06 21 37571508 37571508 C T DOPEY2 Silent p.I93I 0.24 TCGA-EE-A2GU-06 21 41414576 41414576 G A DSCAM Missense_Mutation p.S1803F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2GU-06 21 41447132 41447132 G A DSCAM Missense_Mutation p.P1574S 0.28 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A2GU-06 21 45656889 45656889 G A ICOSLG Silent p.A89A 0.29 TCGA-EE-A2GU-06 22 17072195 17072195 C T CCT8L2 Missense_Mutation p.E416K 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 22 18354649 18354649 G A MICAL3 Silent p.C794C 0.36 TCGA-EE-A2GU-06 22 19184075 19184075 G A CLTCL1 Silent p.I1322I 0.35 TCGA-EE-A2GU-06 22 20977008 20977008 G A SMPD4P1 RNA 0.23 TCGA-EE-A2GU-06 22 23047219 23047219 G A IGLV3-22 Missense_Mutation p.G86E 0.35 deleterious(0.02) possibly_damaging(0.774) TCGA-EE-A2GU-06 22 23077342 23077342 C T IGLV2-18 Missense_Mutation p.S40F 0.25 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2GU-06 22 25331525 25331525 G A TMEM211 Silent p.I55I 0.27 TCGA-EE-A2GU-06 22 26107084 26107084 C T ADRBK2 Missense_Mutation p.A482V 0.27 tolerated(0.42) possibly_damaging(0.831) TCGA-EE-A2GU-06 22 26242175 26242175 G A MYO18B Missense_Mutation p.M1159I 0.31 tolerated(0.33) benign(0.007) TCGA-EE-A2GU-06 22 26423626 26423626 G A MYO18B Silent p.K2562K 0.26 TCGA-EE-A2GU-06 22 30660116 30660117 - C OSM Frame_Shift_Ins p.A172Gfs*122 0.21 TCGA-EE-A2GU-06 22 32217490 32217490 C T DEPDC5 Missense_Mutation p.P625S 0.28 deleterious(0) possibly_damaging(0.735) TCGA-EE-A2GU-06 22 32554976 32554976 G A C22orf42 Missense_Mutation p.S76F 0.24 tolerated_low_confidence(0.09) benign(0.001) TCGA-EE-A2GU-06 22 38120078 38120078 C T TRIOBP Silent p.A505A 0.14 TCGA-EE-A2GU-06 22 38120372 38120372 C T TRIOBP Silent p.A603A 0.05 TCGA-EE-A2GU-06 22 38120944 38120944 C T TRIOBP Missense_Mutation p.S794F 0.25 tolerated_low_confidence(0.15) benign(0.01) TCGA-EE-A2GU-06 22 39627771 39627771 G A PDGFB Silent p.F104F 0.16 TCGA-EE-A2GU-06 22 40417711 40417711 G A FAM83F Silent p.K399K 0.21 TCGA-EE-A2GU-06 22 40819553 40819553 G A MKL1 Missense_Mutation p.P205L 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2GU-06 22 41895859 41895859 C T ACO2 Missense_Mutation p.R56C 0.32 deleterious_low_confidence(0) benign(0.349) TCGA-EE-A2GU-06 22 42269900 42269900 G T SREBF2 Missense_Mutation p.Q322H 0.42 tolerated(0.12) benign(0.012) TCGA-EE-A2GU-06 22 44966445 44966445 G A LINC00207 RNA 0.12 TCGA-EE-A2GU-06 22 45258499 45258499 C T ARHGAP8 3'UTR 0.30 TCGA-EE-A2GU-06 22 46614265 46614265 C T PPARA Missense_Mutation p.H159Y 0.35 deleterious(0) benign(0.279) TCGA-EE-A2GU-06 22 50572967 50572967 C T MOV10L1 Missense_Mutation p.P660S 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2GU-06 22 50664527 50664527 T C TUBGCP6 Missense_Mutation p.I595M 0.26 tolerated(0.07) possibly_damaging(0.522) TCGA-EE-A2GU-06 22 51065360 51065360 G A ARSA Silent p.L196L 0.28 TCGA-EE-A2GU-06 22 51143206 51143206 C T SHANK3 Silent p.F620F 0.25 TCGA-EE-A2GU-06 2 103059758 103059758 G A IL18RAP Missense_Mutation p.E299K 0.37 tolerated(0.08) possibly_damaging(0.457) TCGA-EE-A2GU-06 2 108488640 108488640 C T RGPD4 Missense_Mutation p.R1394C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 2 108921625 108921625 C T SULT1C2 Intron 0.29 TCGA-EE-A2GU-06 2 112621364 112621364 G A ANAPC1 Missense_Mutation p.P314S 0.24 tolerated(0.19) benign(0.113) TCGA-EE-A2GU-06 2 112786409 112786409 G A MERTK Missense_Mutation p.D990N 0.23 deleterious_low_confidence(0.05) benign(0.064) TCGA-EE-A2GU-06 2 113346455 113346455 C T CHCHD5 Missense_Mutation p.P108S 0.13 tolerated_low_confidence(0.15) benign(0.004) TCGA-EE-A2GU-06 2 1243537 1243537 C T SNTG2 Missense_Mutation p.P293S 0.27 tolerated(0.13) benign(0.004) TCGA-EE-A2GU-06 2 128327441 128327441 C T MYO7B Missense_Mutation p.S183L 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2GU-06 2 131975958 131975958 C T POTEE 5'UTR 0.31 TCGA-EE-A2GU-06 2 132289353 132289353 C T CCDC74A Missense_Mutation p.P221S 0.62 tolerated(0.32) benign(0.227) TCGA-EE-A2GU-06 2 135743584 135743584 G A MAP3K19 Missense_Mutation p.S953F 0.36 deleterious(0) probably_damaging(0.978) TCGA-EE-A2GU-06 2 145274920 145274920 A G ZEB2 5'UTR 0.29 TCGA-EE-A2GU-06 2 1520688 1520688 C T TPO Missense_Mutation p.S851F 0.31 deleterious(0) probably_damaging(0.987) TCGA-EE-A2GU-06 2 160964243 160964243 G A ITGB6 Missense_Mutation p.R739C 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A2GU-06 2 164466641 164466641 G A FIGN Silent p.I567I 0.22 TCGA-EE-A2GU-06 2 168101126 168101126 A C XIRP2 Missense_Mutation p.E1075A 0.32 possibly_damaging(0.487) TCGA-EE-A2GU-06 2 168104432 168104432 A G XIRP2 Missense_Mutation p.D2177G 0.30 benign(0) TCGA-EE-A2GU-06 2 168726198 168726198 C T B3GALT1 Missense_Mutation p.R217C 0.33 deleterious(0.04) possibly_damaging(0.892) TCGA-EE-A2GU-06 2 171238569 171238569 G A MYO3B Missense_Mutation p.A339T 0.23 tolerated(0.6) benign(0.007) TCGA-EE-A2GU-06 2 171371487 171371487 G A MYO3B Missense_Mutation p.G1143R 0.28 tolerated_low_confidence(0.4) benign(0) TCGA-EE-A2GU-06 2 173334104 173334104 G A ITGA6 Nonsense_Mutation p.W213* 0.33 TCGA-EE-A2GU-06 2 173848292 173848292 C T RAPGEF4 Missense_Mutation p.S358F 0.31 deleterious(0) probably_damaging(0.928) TCGA-EE-A2GU-06 2 179408103 179408103 G A TTN Silent p.V32199V 0.21 TCGA-EE-A2GU-06 2 179444756 179444756 C T TTN Missense_Mutation p.E22420K 0.31 TCGA-EE-A2GU-06 2 179527693 179527693 C T TTN Missense_Mutation p.V12264I 0.40 TCGA-EE-A2GU-06 2 179603068 179603068 C T TTN Silent p.R4704R 0.26 TCGA-EE-A2GU-06 2 179605128 179605128 G A TTN Missense_Mutation p.P4278S 0.19 TCGA-EE-A2GU-06 2 180311384 180311384 G A ZNF385B Missense_Mutation p.P262S 0.34 tolerated(0.43) benign(0) TCGA-EE-A2GU-06 2 182360652 182360652 C T ITGA4 Missense_Mutation p.P510S 0.23 tolerated(0.08) possibly_damaging(0.502) TCGA-EE-A2GU-06 2 189929782 189929782 C T COL5A2 Missense_Mutation p.G522D 0.24 probably_damaging(0.999) TCGA-EE-A2GU-06 2 196746717 196746717 C T DNAH7 Splice_Site p.X1922_splice 0.33 TCGA-EE-A2GU-06 2 196788411 196788411 G A DNAH7 Missense_Mutation p.H1245Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 2 198636606 198636606 C T AC011997.1 Missense_Mutation p.L63F 0.28 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-EE-A2GU-06 2 207170939 207170939 C T ZDBF2 Missense_Mutation p.R563W 0.32 tolerated(0.34) probably_damaging(0.919) TCGA-EE-A2GU-06 2 207171375 207171375 C T ZDBF2 Missense_Mutation p.S708F 0.32 tolerated(1) possibly_damaging(0.828) TCGA-EE-A2GU-06 2 208632177 208632177 G A FZD5 Silent p.I429I 0.28 TCGA-EE-A2GU-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-EE-A2GU-06 2 210658531 210658531 G A UNC80 Missense_Mutation p.D296N 0.42 benign(0.043) TCGA-EE-A2GU-06 2 21225676 21225676 C T APOB Silent p.G4206G 0.30 TCGA-EE-A2GU-06 2 21235180 21235180 C T APOB Silent p.L1520L 0.27 TCGA-EE-A2GU-06 2 21252650 21252650 C T APOB Missense_Mutation p.G493E 0.28 probably_damaging(1) TCGA-EE-A2GU-06 2 229890744 229890744 C T PID1 Nonsense_Mutation p.W117* 0.22 TCGA-EE-A2GU-06 2 230693983 230693983 A C TRIP12 Missense_Mutation p.L411R 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A2GU-06 2 231774658 231774658 G A GPR55 3'UTR 0.28 TCGA-EE-A2GU-06 2 233410453 233410453 G A CHRNG 3'UTR 0.27 TCGA-EE-A2GU-06 2 233899687 233899687 G A NEU2 Missense_Mutation p.E355K 0.27 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A2GU-06 2 234078703 234078703 T C INPP5D Missense_Mutation p.F550L 0.26 tolerated(0.92) benign(0.248) TCGA-EE-A2GU-06 2 234652280 234652280 C T UGT1A10 Intron 0.27 TCGA-EE-A2GU-06 2 234680923 234680923 C T UGT1A4 Silent p.I441I 0.17 TCGA-EE-A2GU-06 2 24021187 24021187 G A ATAD2B Missense_Mutation p.R821C 0.31 tolerated(0.14) probably_damaging(0.951) TCGA-EE-A2GU-06 2 27373171 27373171 G A TCF23 Missense_Mutation p.E135K 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2GU-06 2 27427331 27427331 G A SLC5A6 Nonsense_Mutation p.Q335* 0.20 TCGA-EE-A2GU-06 2 29293979 29293979 G A C2orf71 Missense_Mutation p.P1050L 0.30 tolerated(0.05) possibly_damaging(0.755) TCGA-EE-A2GU-06 2 30954249 30954249 G A CAPN13 Silent p.L648L 0.28 TCGA-EE-A2GU-06 2 31472268 31472268 C T EHD3 Silent p.L146L 0.27 TCGA-EE-A2GU-06 2 31571809 31571809 G A XDH Missense_Mutation p.P1003S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 2 31611135 31611135 C T XDH Silent p.G174G 0.28 TCGA-EE-A2GU-06 2 36744665 36744665 C T CRIM1 Missense_Mutation p.S729F 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2GU-06 2 73680499 73680499 C T ALMS1 Missense_Mutation p.P2281L 0.34 probably_damaging(0.993) TCGA-EE-A2GU-06 2 80646705 80646705 G A CTNNA2 Silent p.E423E 0.35 TCGA-EE-A2GU-06 2 85133146 85133146 C T TMSB10 Missense_Mutation p.A2V 0.23 deleterious(0.05) benign(0.095) TCGA-EE-A2GU-06 2 95847964 95847964 C T ZNF2 3'UTR 0.28 TCGA-EE-A2GU-06 2 98275374 98275374 G A ACTR1B Silent p.A136A 0.29 TCGA-EE-A2GU-06 2 98914416 98914416 C T VWA3B Silent p.F1068F 0.31 TCGA-EE-A2GU-06 2 99454685 99454685 G A KIAA1211L Missense_Mutation p.P46S 0.31 tolerated(0.26) possibly_damaging(0.803) TCGA-EE-A2GU-06 3 108127247 108127247 C T MYH15 Silent p.E1520E 0.34 TCGA-EE-A2GU-06 3 118644973 118644973 G A IGSF11 Silent p.L185L 0.27 TCGA-EE-A2GU-06 3 120957823 120957823 C T STXBP5L Missense_Mutation p.P397L 0.31 deleterious(0.05) probably_damaging(1) TCGA-EE-A2GU-06 3 121264614 121264614 G A POLQ Silent p.S37S 0.25 TCGA-EE-A2GU-06 3 121980939 121980939 G A CASR Missense_Mutation p.E353K 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GU-06 3 124641140 124641140 G A MUC13 Silent p.F215F 0.36 TCGA-EE-A2GU-06 3 124930218 124930218 G A SLC12A8 5'UTR 0.31 TCGA-EE-A2GU-06 3 124952531 124952531 G T ZNF148 Missense_Mutation p.P347T 0.25 deleterious(0.03) possibly_damaging(0.469) TCGA-EE-A2GU-06 3 125856726 125856726 C T ALDH1L1 Missense_Mutation p.G395E 0.30 tolerated_low_confidence(0.88) benign(0.246) TCGA-EE-A2GU-06 3 131100667 131100667 C T NUDT16 Silent p.L7L 0.38 TCGA-EE-A2GU-06 3 133098997 133098997 G A TMEM108 Missense_Mutation p.G148R 0.36 tolerated_low_confidence(0.08) probably_damaging(1) TCGA-EE-A2GU-06 3 13660447 13660447 G A FBLN2 Silent p.L661L 0.34 TCGA-EE-A2GU-06 3 138738775 138738775 A T PRR23B Silent p.G243G 0.32 TCGA-EE-A2GU-06 3 138739084 138739084 T C PRR23B Silent p.E140E 0.24 TCGA-EE-A2GU-06 3 151164524 151164524 G C IGSF10 Missense_Mutation p.P1082R 0.29 deleterious(0.04) possibly_damaging(0.621) TCGA-EE-A2GU-06 3 151166599 151166599 C T IGSF10 Silent p.R390R 0.29 TCGA-EE-A2GU-06 3 154042118 154042118 G A DHX36 Missense_Mutation p.H30Y 0.34 tolerated_low_confidence(1) benign(0.152) TCGA-EE-A2GU-06 3 158539803 158539803 C T MFSD1 Silent p.S366S 0.36 TCGA-EE-A2GU-06 3 158983100 158983100 C T IQCJ Missense_Mutation p.L130F 0.25 tolerated_low_confidence(0.15) benign(0.018) TCGA-EE-A2GU-06 3 172694842 172694842 C T SPATA16 Silent p.R283R 0.28 TCGA-EE-A2GU-06 3 183962422 183962422 G A ALG3 Silent p.A231A 0.24 TCGA-EE-A2GU-06 3 191888297 191888297 C T FGF12 Missense_Mutation p.R188K 0.25 tolerated(0.1) possibly_damaging(0.869) TCGA-EE-A2GU-06 3 193232524 193232524 G A ATP13A4 Missense_Mutation p.S66F 0.25 deleterious(0) probably_damaging(0.941) TCGA-EE-A2GU-06 3 27203839 27203839 C T NEK10 3'UTR 0.42 TCGA-EE-A2GU-06 3 27758863 27758863 C T EOMES Missense_Mutation p.A587T 0.31 tolerated(1) benign(0.001) TCGA-EE-A2GU-06 3 31725152 31725152 G A OSBPL10 Missense_Mutation p.S567F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 3 36526476 36526476 G A STAC Missense_Mutation p.G166E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 3 38355224 38355224 C A SLC22A14 Silent p.T390T 0.30 TCGA-EE-A2GU-06 3 38601711 38601711 C T SCN5A Missense_Mutation p.G1391E 0.32 tolerated(0.08) probably_damaging(1) TCGA-EE-A2GU-06 3 3887668 3887668 G A LRRN1 Missense_Mutation p.R448Q 0.29 tolerated(0.11) probably_damaging(0.949) TCGA-EE-A2GU-06 3 38949448 38949448 G A SCN11A Nonsense_Mutation p.Q489* 0.31 TCGA-EE-A2GU-06 3 46307695 46307695 C T CCR3 Missense_Mutation p.P370L 0.25 deleterious(0.04) benign(0.008) TCGA-EE-A2GU-06 3 48614163 48614163 G A COL7A1 Silent p.I1882I 0.14 TCGA-EE-A2GU-06 3 48621382 48621382 G A COL7A1 Missense_Mutation p.P1410L 0.42 unknown(0) TCGA-EE-A2GU-06 3 49756665 49756665 G A AMIGO3 Silent p.P78P 0.32 TCGA-EE-A2GU-06 3 52485757 52485757 C T TNNC1 Intron 0.26 TCGA-EE-A2GU-06 3 57882648 57882648 C T SLMAP Missense_Mutation p.S463F 0.28 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EE-A2GU-06 3 58139289 58139289 G A FLNB Silent p.V2216V 0.50 TCGA-EE-A2GU-06 3 58395265 58395265 C T PXK Nonsense_Mutation p.Q439* 0.25 TCGA-EE-A2GU-06 3 68934400 68934400 C T FAM19A4 5'UTR 0.36 TCGA-EE-A2GU-06 3 81810613 81810613 T A GBE1 Missense_Mutation p.N19I 0.24 tolerated(0.12) benign(0.006) TCGA-EE-A2GU-06 4 100480449 100480449 T C TRMT10A Missense_Mutation p.D16G 0.21 tolerated(0.05) benign(0.047) TCGA-EE-A2GU-06 4 101109086 101109086 C T DDIT4L Silent p.V110V 0.27 TCGA-EE-A2GU-06 4 107845043 107845043 C T DKK2 3'UTR 0.21 TCGA-EE-A2GU-06 4 156631965 156631965 C T GUCY1A3 Silent p.P216P 0.30 TCGA-EE-A2GU-06 4 164246387 164246387 C T NPY1R 3'UTR 0.67 TCGA-EE-A2GU-06 4 166946521 166946521 C T TLL1 Missense_Mutation p.P366S 0.43 deleterious(0.04) possibly_damaging(0.739) TCGA-EE-A2GU-06 4 187455134 187455134 C T MTNR1A Silent p.L254L 0.57 TCGA-EE-A2GU-06 4 2896428 2896428 C T ADD1 Silent p.V237V 0.23 TCGA-EE-A2GU-06 4 3031062 3031062 G A GRK4 Missense_Mutation p.D399N 0.30 deleterious(0.02) possibly_damaging(0.795) TCGA-EE-A2GU-06 4 37836258 37836258 G A PGM2 Missense_Mutation p.E90K 0.26 tolerated(0.5) benign(0.02) TCGA-EE-A2GU-06 4 39851153 39851153 G A PDS5A Missense_Mutation p.S1069F 0.20 deleterious(0.04) benign(0.078) TCGA-EE-A2GU-06 4 40778268 40778268 G A NSUN7 Missense_Mutation p.G343E 0.28 tolerated(0.2) probably_damaging(0.914) TCGA-EE-A2GU-06 4 47561023 47561023 C T ATP10D Missense_Mutation p.R840C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 4 47907343 47907343 C T NFXL1 Missense_Mutation p.E143K 0.24 tolerated(0.31) benign(0.101) TCGA-EE-A2GU-06 4 55968659 55968659 C T KDR Silent p.T668T 0.22 TCGA-EE-A2GU-06 4 69795706 69795706 C T UGT2A3 Missense_Mutation p.G470E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 4 70360938 70360938 C T UGT2B4 Missense_Mutation p.M214I 0.29 tolerated(0.14) benign(0.068) TCGA-EE-A2GU-06 4 71201408 71201408 C T CABS1 Missense_Mutation p.P218S 0.20 tolerated(1) benign(0.001) TCGA-EE-A2GU-06 4 71275451 71275451 C T PROL1 Missense_Mutation p.P136S 0.31 tolerated_low_confidence(0.19) possibly_damaging(0.803) TCGA-EE-A2GU-06 4 71508384 71508384 G A ENAM Missense_Mutation p.G414E 0.35 tolerated(0.37) benign(0.248) TCGA-EE-A2GU-06 4 74703524 74703524 G A CXCL6 3'UTR 0.67 TCGA-EE-A2GU-06 4 77324342 77324342 C T CCDC158 Missense_Mutation p.E7K 0.29 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-EE-A2GU-06 4 79507487 79507487 C T ANXA3 Missense_Mutation p.S129F 0.25 tolerated(0.19) benign(0.431) TCGA-EE-A2GU-06 4 79851443 79851443 A T PAQR3 Missense_Mutation p.S129T 0.22 tolerated(0.25) benign(0.119) TCGA-EE-A2GU-06 5 101575017 101575017 C T SLCO4C1 Missense_Mutation p.G651E 0.34 deleterious(0.02) possibly_damaging(0.737) TCGA-EE-A2GU-06 5 112769665 112769665 G A TSSK1B Missense_Mutation p.S291F 0.38 deleterious(0) possibly_damaging(0.563) TCGA-EE-A2GU-06 5 115141075 115141075 C T CDO1 3'UTR 0.25 TCGA-EE-A2GU-06 5 118487677 118487677 C T DMXL1 Missense_Mutation p.H1550Y 0.23 tolerated(0.24) probably_damaging(1) TCGA-EE-A2GU-06 5 13766229 13766229 G A DNAH5 Silent p.I3319I 0.25 TCGA-EE-A2GU-06 5 13781008 13781008 C T DNAH5 Missense_Mutation p.G2961R 0.29 probably_damaging(0.988) TCGA-EE-A2GU-06 5 13839571 13839571 C T DNAH5 Missense_Mutation p.E1926K 0.30 benign(0.305) TCGA-EE-A2GU-06 5 13885137 13885137 G A DNAH5 Missense_Mutation p.R982C 0.33 possibly_damaging(0.689) TCGA-EE-A2GU-06 5 139905704 139905704 C T ANKHD1 Missense_Mutation p.P1539L 0.31 probably_damaging(0.997) TCGA-EE-A2GU-06 5 140188595 140188595 C T PCDHA4 Missense_Mutation p.S608L 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.577) TCGA-EE-A2GU-06 5 140433185 140433185 C T PCDHB1 Silent p.F710F 0.26 TCGA-EE-A2GU-06 5 140433453 140433453 G A PCDHB1 Missense_Mutation p.D800N 0.35 tolerated(0.28) benign(0.002) TCGA-EE-A2GU-06 5 140596158 140596158 C T PCDHB13 3'UTR 0.31 TCGA-EE-A2GU-06 5 140788613 140788613 C T PCDHGB6 Nonsense_Mutation p.R282* 0.38 TCGA-EE-A2GU-06 5 141236975 141236975 G A PCDH1 Missense_Mutation p.S1054F 0.17 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A2GU-06 5 145246227 145246227 G T GRXCR2 Missense_Mutation p.T134N 0.30 deleterious(0) probably_damaging(0.979) TCGA-EE-A2GU-06 5 145519825 145519825 C T LARS Splice_Site p.X697_splice 0.15 TCGA-EE-A2GU-06 5 145523002 145523002 C T LARS Missense_Mutation p.G617E 0.27 deleterious(0) possibly_damaging(0.685) TCGA-EE-A2GU-06 5 154394176 154394176 G A KIF4B Missense_Mutation p.E253K 0.28 tolerated(0.13) benign(0.151) TCGA-EE-A2GU-06 5 170667962 170667962 C T RANBP17 Missense_Mutation p.S818L 0.31 deleterious(0.01) possibly_damaging(0.813) TCGA-EE-A2GU-06 5 171384 171384 C T PLEKHG4B Missense_Mutation p.P936L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 5 172336721 172336721 C T ERGIC1 Silent p.I69I 0.24 TCGA-EE-A2GU-06 5 176396036 176396036 A G UIMC1 Silent p.G240G 0.35 TCGA-EE-A2GU-06 5 176765561 176765561 G A LMAN2 Missense_Mutation p.H121Y 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2GU-06 5 176943935 176943935 C T DDX41 Silent p.S4S 0.23 TCGA-EE-A2GU-06 5 180166750 180166750 G A OR2Y1 Silent p.I103I 0.29 TCGA-EE-A2GU-06 5 35876446 35876446 G A IL7R Missense_Mutation p.S413N 0.29 tolerated(0.21) benign(0.014) TCGA-EE-A2GU-06 5 38490385 38490385 G A LIFR Nonsense_Mutation p.R692* 0.27 TCGA-EE-A2GU-06 5 38881857 38881857 G A OSMR Missense_Mutation p.E137K 0.28 tolerated(0.37) benign(0.06) TCGA-EE-A2GU-06 5 41049459 41049459 C T MROH2B Missense_Mutation p.R475K 0.25 tolerated(0.25) benign(0.241) TCGA-EE-A2GU-06 5 41195920 41195920 G A C6 Silent p.I187I 0.28 TCGA-EE-A2GU-06 5 52351403 52351403 G A ITGA2 Missense_Mutation p.R272Q 0.23 tolerated(0.23) benign(0.001) TCGA-EE-A2GU-06 5 64447638 64447638 G A ADAMTS6 3'UTR 0.32 TCGA-EE-A2GU-06 5 75427754 75427754 C T SV2C Missense_Mutation p.P60L 0.34 tolerated_low_confidence(0.22) benign(0) TCGA-EE-A2GU-06 5 76251650 76251650 G A CRHBP Missense_Mutation p.G169E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 5 87564666 87564666 G A TMEM161B 5'Flank 0.36 TCGA-EE-A2GU-06 5 89925204 89925204 G A GPR98 Missense_Mutation p.G563R 0.31 probably_damaging(0.979) TCGA-EE-A2GU-06 5 90459687 90459687 G A GPR98 Silent p.R6297R 0.35 TCGA-EE-A2GU-06 5 94353169 94353169 C T MCTP1 Missense_Mutation p.G247E 0.39 deleterious(0.01) benign(0.053) TCGA-EE-A2GU-06 5 96333773 96333773 C T LNPEP Missense_Mutation p.S526L 0.20 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2GU-06 6 106555230 106555230 G A PRDM1 Missense_Mutation p.G783R 0.49 deleterious(0.03) benign(0.049) TCGA-EE-A2GU-06 6 10882074 10882074 G A GCM2 5'UTR 0.15 TCGA-EE-A2GU-06 6 10961628 10961628 G A SYCP2L Silent p.K782K 0.22 TCGA-EE-A2GU-06 6 118801628 118801628 G A CEP85L Silent p.P601P 0.40 TCGA-EE-A2GU-06 6 12164380 12164380 C T HIVEP1 Silent p.L2615L 0.28 TCGA-EE-A2GU-06 6 12296391 12296391 G A EDN1 3'UTR 0.27 TCGA-EE-A2GU-06 6 128134112 128134112 C T THEMIS Silent p.P558P 0.53 TCGA-EE-A2GU-06 6 154533966 154533966 C T IPCEF1 Missense_Mutation p.E159K 0.43 deleterious(0.01) possibly_damaging(0.465) TCGA-EE-A2GU-06 6 157527627 157527627 C T ARID1B Silent p.F1784F 0.53 TCGA-EE-A2GU-06 6 165706919 165706919 G A C6orf118 Missense_Mutation p.S368F 0.41 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2GU-06 6 166571956 166571956 G A T Silent p.P385P 0.40 TCGA-EE-A2GU-06 6 20490770 20490770 C T E2F3 3'UTR 0.23 TCGA-EE-A2GU-06 6 24515510 24515510 C T ALDH5A1 Missense_Mutation p.S294F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 6 24556956 24556956 A G KIAA0319 Silent p.G912G 0.14 TCGA-EE-A2GU-06 6 25726526 25726527 - T HIST1H2AA Frame_Shift_Ins p.T77Nfs*15 0.18 TCGA-EE-A2GU-06 6 25862608 25862608 C T SLC17A3 Silent p.T52T 0.19 TCGA-EE-A2GU-06 6 26157334 26157334 G A HIST1H1E 3'UTR 0.29 TCGA-EE-A2GU-06 6 28057240 28057240 T A ZNF165 Missense_Mutation p.L484I 0.32 deleterious_low_confidence(0.05) benign(0) TCGA-EE-A2GU-06 6 28540378 28540378 C T SCAND3 Silent p.V1096V 0.24 TCGA-EE-A2GU-06 6 29694733 29694733 A T HLA-F Missense_Mutation p.Q370H 0.20 deleterious_low_confidence(0) benign(0.143) TCGA-EE-A2GU-06 6 29796330 29796330 C T HLA-G Silent p.T118T 0.14 TCGA-EE-A2GU-06 6 30153703 30153703 G A TRIM26 Missense_Mutation p.P524S 0.16 deleterious(0) unknown(0) TCGA-EE-A2GU-06 6 31742374 31742374 C T VWA7 Missense_Mutation p.E214K 0.21 tolerated(0.27) benign(0.016) TCGA-EE-A2GU-06 6 31926906 31926906 G A SKIV2L 5'UTR 0.23 TCGA-EE-A2GU-06 6 32008216 32008216 G A CYP21A2 Missense_Mutation p.E325K 0.16 tolerated(1) benign(0.023) TCGA-EE-A2GU-06 6 3224980 3224980 G A TUBB2B 3'UTR 0.23 TCGA-EE-A2GU-06 6 35543443 35543443 G A FKBP5 3'UTR 0.42 TCGA-EE-A2GU-06 6 35765054 35765054 G A CLPS Silent p.I4I 0.16 TCGA-EE-A2GU-06 6 37631751 37631751 G A MDGA1 Nonsense_Mutation p.R67* 0.15 TCGA-EE-A2GU-06 6 38840746 38840746 C T DNAH8 Silent p.S2217S 0.19 TCGA-EE-A2GU-06 6 39282724 39282724 C T KCNK16 3'UTR 0.27 TCGA-EE-A2GU-06 6 40400344 40400344 C T LRFN2 Missense_Mutation p.R170Q 0.19 tolerated(0.98) benign(0.044) TCGA-EE-A2GU-06 6 41002663 41002663 C T UNC5CL Missense_Mutation p.E51K 0.22 deleterious_low_confidence(0.04) benign(0.108) TCGA-EE-A2GU-06 6 46660361 46660361 C T TDRD6 Missense_Mutation p.S1499F 0.23 deleterious(0.01) benign(0.373) TCGA-EE-A2GU-06 6 46678293 46678293 C T PLA2G7 Missense_Mutation p.E256K 0.18 tolerated(1) benign(0.002) TCGA-EE-A2GU-06 6 46806867 46806867 G A MEP1A Silent p.R745R 0.26 TCGA-EE-A2GU-06 6 4735069 4735069 C T CDYL Silent p.P59P 0.38 TCGA-EE-A2GU-06 6 49754021 49754021 C T PGK2 Missense_Mutation p.E294K 0.35 tolerated(0.52) benign(0.105) TCGA-EE-A2GU-06 6 52993247 52993247 C T GCM1 Nonsense_Mutation p.W356* 0.29 TCGA-EE-A2GU-06 6 54173504 54173504 C T TINAG Silent p.F52F 0.33 TCGA-EE-A2GU-06 6 54805757 54805757 G A FAM83B Missense_Mutation p.R663Q 0.30 deleterious(0.02) probably_damaging(0.943) TCGA-EE-A2GU-06 6 55300330 55300330 G A HMGCLL1 3'UTR 0.31 TCGA-EE-A2GU-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2GU-06 6 56494203 56494203 G A DST Silent p.F903F 0.21 TCGA-EE-A2GU-06 6 73904374 73904374 C T KCNQ5 Missense_Mutation p.S698L 0.51 deleterious(0.02) possibly_damaging(0.792) TCGA-EE-A2GU-06 7 100346076 100346076 G A ZAN Missense_Mutation p.G411E 0.33 probably_damaging(0.998) TCGA-EE-A2GU-06 7 100350369 100350369 C T ZAN Missense_Mutation p.P881S 0.32 unknown(0) TCGA-EE-A2GU-06 7 101882657 101882657 C T CUX1 Missense_Mutation p.S1238F 0.39 deleterious(0.05) unknown(0) TCGA-EE-A2GU-06 7 102108588 102108588 C T LRWD1 Missense_Mutation p.S253L 0.39 tolerated(0.37) benign(0) TCGA-EE-A2GU-06 7 103126741 103126741 C T RELN Missense_Mutation p.G3296R 0.29 deleterious(0) possibly_damaging(0.824) TCGA-EE-A2GU-06 7 103281034 103281034 G A RELN Silent p.L675L 0.22 TCGA-EE-A2GU-06 7 105148566 105148566 C T PUS7 Missense_Mutation p.E132K 0.24 deleterious(0.01) possibly_damaging(0.647) TCGA-EE-A2GU-06 7 113558700 113558700 C T PPP1R3A Missense_Mutation p.D118N 0.29 deleterious(0.01) benign(0.261) TCGA-EE-A2GU-06 7 120768439 120768439 G A CPED1 Missense_Mutation p.E436K 0.34 tolerated(0.57) benign(0.077) TCGA-EE-A2GU-06 7 120776102 120776102 C T CPED1 Missense_Mutation p.P553S 0.21 tolerated(0.1) benign(0.033) TCGA-EE-A2GU-06 7 127253841 127253841 G A PAX4 Silent p.F169F 0.33 TCGA-EE-A2GU-06 7 129064971 129064971 C T AHCYL2 Missense_Mutation p.P566L 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 7 131149126 131149126 C T MKLN1 Missense_Mutation p.P583S 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GU-06 7 132754950 132754950 G A CHCHD3 Missense_Mutation p.P41S 0.20 tolerated(0.14) benign(0.04) TCGA-EE-A2GU-06 7 134346748 134346748 G A BPGM Silent p.E163E 0.22 TCGA-EE-A2GU-06 7 141672787 141672787 G A TAS2R38 Missense_Mutation p.R235C 0.37 tolerated(0.08) benign(0) TCGA-EE-A2GU-06 7 142104208 142104208 G A TRBV6-9 Missense_Mutation p.S86F 0.28 deleterious(0.03) benign(0.231) TCGA-EE-A2GU-06 7 142364537 142364537 C T TRBV24-1 Missense_Mutation p.P58S 0.19 tolerated(0.13) possibly_damaging(0.612) TCGA-EE-A2GU-06 7 142643320 142643320 C T KEL Missense_Mutation p.A430T 0.16 tolerated(0.62) benign(0.074) TCGA-EE-A2GU-06 7 143028368 143028368 C T CLCN1 Silent p.F341F 0.22 TCGA-EE-A2GU-06 7 143053691 143053691 G A FAM131B Silent p.S345S 0.24 TCGA-EE-A2GU-06 7 144059831 144059831 C T ARHGEF5 Silent p.I23I 0.30 TCGA-EE-A2GU-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.37 deleterious(0) possibly_damaging(0.466) TCGA-EE-A2GU-06 7 149474280 149474280 C T ZNF467 5'Flank 0.29 TCGA-EE-A2GU-06 7 150217185 150217185 A C GIMAP7 Missense_Mutation p.Q41H 0.23 tolerated(1) benign(0.004) TCGA-EE-A2GU-06 7 150417482 150417482 G A GIMAP1 Silent p.Q130Q 0.30 TCGA-EE-A2GU-06 7 150440017 150440017 G A GIMAP5 Missense_Mutation p.E264K 0.33 tolerated(0.1) benign(0.195) TCGA-EE-A2GU-06 7 151841956 151841956 A C KMT2C Missense_Mutation p.L4729V 0.27 probably_damaging(0.997) TCGA-EE-A2GU-06 7 15666406 15666406 C T MEOX2 Missense_Mutation p.E219K 0.26 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A2GU-06 7 22165256 22165256 G A RAPGEF5 Silent p.V681V 0.31 TCGA-EE-A2GU-06 7 2565122 2565122 A T LFNG Missense_Mutation p.H219L 0.30 tolerated(0.11) benign(0.161) TCGA-EE-A2GU-06 7 31378643 31378643 C T NEUROD6 Silent p.R80R 0.25 TCGA-EE-A2GU-06 7 33063712 33063712 C T NT5C3A Silent p.T87T 0.24 TCGA-EE-A2GU-06 7 35129946 35129946 A T DPY19L2P1 RNA 0.24 TCGA-EE-A2GU-06 7 35129947 35129947 C T DPY19L2P1 RNA 0.24 TCGA-EE-A2GU-06 7 38433666 38433666 G A AMPH Missense_Mutation p.T516I 0.22 tolerated(0.09) benign(0.001) TCGA-EE-A2GU-06 7 39379543 39379543 C T POU6F2 Missense_Mutation p.P272S 0.27 tolerated_low_confidence(0.12) unknown(0) TCGA-EE-A2GU-06 7 42977019 42977019 C T MRPL32 Silent p.I137I 0.34 TCGA-EE-A2GU-06 7 44044697 44044697 C T SPDYE1 Intron 0.26 TCGA-EE-A2GU-06 7 44805812 44805812 C T ZMIZ2 Silent p.T764T 0.17 TCGA-EE-A2GU-06 7 62758729 62758729 C T ZNF733P RNA 0.24 TCGA-EE-A2GU-06 7 63720636 63720636 C T ZNF679 Missense_Mutation p.S26F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2GU-06 7 75174474 75174474 G A HIP1 Missense_Mutation p.P858S 0.28 tolerated(0.54) benign(0.009) TCGA-EE-A2GU-06 7 7571504 7571504 G A COL28A1 Silent p.I52I 0.48 TCGA-EE-A2GU-06 7 77010632 77010632 C T GSAP Missense_Mutation p.G189E 0.31 tolerated(0.25) benign(0.019) TCGA-EE-A2GU-06 7 87179824 87179824 C T ABCB1 Missense_Mutation p.R395K 0.24 tolerated(1) benign(0.001) TCGA-EE-A2GU-06 7 92763562 92763562 C T SAMD9L Missense_Mutation p.E575K 0.30 tolerated(0.09) benign(0.209) TCGA-EE-A2GU-06 7 94293524 94293524 C T PEG10 Missense_Mutation p.S219F 0.32 tolerated(0.15) benign(0.006) TCGA-EE-A2GU-06 7 95167013 95167013 C T ASB4 Missense_Mutation p.S408F 0.35 tolerated(0.05) benign(0.001) TCGA-EE-A2GU-06 7 98609157 98609157 A G TRRAP Missense_Mutation p.K3765R 0.16 possibly_damaging(0.597) TCGA-EE-A2GU-06 7 99797259 99797259 G C STAG3 Missense_Mutation p.G557R 0.29 deleterious(0.03) possibly_damaging(0.603) TCGA-EE-A2GU-06 8 10756279 10756279 G A XKR6 Missense_Mutation p.S370F 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 8 110131511 110131511 A G TRHR Missense_Mutation p.T342A 0.27 tolerated(0.93) benign(0) TCGA-EE-A2GU-06 8 119209890 119209890 G A SAMD12 3'UTR 0.33 TCGA-EE-A2GU-06 8 131812690 131812690 G A ADCY8 Silent p.I1014I 0.23 TCGA-EE-A2GU-06 8 133036886 133036886 C T OC90 Missense_Mutation p.E426K 0.28 tolerated(0.09) benign(0.406) TCGA-EE-A2GU-06 8 143994858 143994858 G A CYP11B2 Missense_Mutation p.P322S 0.26 tolerated(0.11) possibly_damaging(0.764) TCGA-EE-A2GU-06 8 144873582 144873582 G A SCRIB Missense_Mutation p.S1600F 0.22 benign(0.293) TCGA-EE-A2GU-06 8 144895852 144895852 G A SCRIB Missense_Mutation p.A134V 0.35 probably_damaging(0.997) TCGA-EE-A2GU-06 8 144942134 144942134 C T EPPK1 Missense_Mutation p.G1763E 0.29 probably_damaging(0.946) TCGA-EE-A2GU-06 8 144944041 144944041 C T EPPK1 Silent p.Q1127Q 0.50 TCGA-EE-A2GU-06 8 145763161 145763161 G A ARHGAP39 Missense_Mutation p.T853I 0.23 tolerated(0.14) benign(0.066) TCGA-EE-A2GU-06 8 18257576 18257576 G A NAT2 Silent p.L21L 0.30 TCGA-EE-A2GU-06 8 23058222 23058222 G A TNFRSF10A Silent p.I227I 0.24 TCGA-EE-A2GU-06 8 35453116 35453116 C T UNC5D Missense_Mutation p.P171S 0.25 tolerated(0.85) benign(0.177) TCGA-EE-A2GU-06 8 35648089 35648089 C T UNC5D 3'UTR 0.30 TCGA-EE-A2GU-06 8 37692876 37692876 C T GPR124 Missense_Mutation p.T598I 0.28 deleterious(0) possibly_damaging(0.486) TCGA-EE-A2GU-06 8 52387578 52387578 G A PXDNL Silent p.L216L 0.31 TCGA-EE-A2GU-06 8 52567284 52567284 C T PXDNL Silent p.G67G 0.30 TCGA-EE-A2GU-06 8 57228600 57228600 C T SDR16C5 Missense_Mutation p.E103K 0.18 deleterious(0.04) possibly_damaging(0.872) TCGA-EE-A2GU-06 8 59058929 59058929 G A FAM110B Missense_Mutation p.R47K 0.29 tolerated(0.96) benign(0.191) TCGA-EE-A2GU-06 8 67930060 67930060 C T PPP1R42 5'UTR 0.29 TCGA-EE-A2GU-06 8 68965427 68965427 G A PREX2 Missense_Mutation p.E347K 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2GU-06 8 70744139 70744139 C T SLCO5A1 Missense_Mutation p.G257E 0.34 tolerated(0.17) benign(0.069) TCGA-EE-A2GU-06 8 77768199 77768199 G A ZFHX4 Silent p.V3014V 0.26 TCGA-EE-A2GU-06 8 80831226 80831226 G A MRPS28 Missense_Mutation p.H185Y 0.37 tolerated_low_confidence(1) benign(0.063) TCGA-EE-A2GU-06 8 86244781 86244781 C T CA1 Missense_Mutation p.V151I 0.21 tolerated(0.93) benign(0.003) TCGA-EE-A2GU-06 8 91057137 91057137 C T DECR1 Missense_Mutation p.P267S 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A2GU-06 8 93088306 93088306 C T RUNX1T1 Intron 0.27 TCGA-EE-A2GU-06 8 95158288 95158288 G A CDH17 Missense_Mutation p.P679S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 8 99441498 99441498 G A KCNS2 Missense_Mutation p.D431N 0.38 deleterious(0.03) benign(0.202) TCGA-EE-A2GU-06 9 104432834 104432834 G A GRIN3A Silent p.L620L 0.37 TCGA-EE-A2GU-06 9 107360783 107360783 C T OR13C5 Silent p.K304K 0.26 TCGA-EE-A2GU-06 9 107379675 107379675 C T OR13C9 Missense_Mutation p.D271N 0.28 tolerated(0.07) benign(0.024) TCGA-EE-A2GU-06 9 114296142 114296142 C T ZNF483 Silent p.L209L 0.20 TCGA-EE-A2GU-06 9 115760190 115760190 C T ZNF883 RNA 0.29 TCGA-EE-A2GU-06 9 120466753 120466753 G A TLR4 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0.04) benign(0.037) TCGA-EE-A2GU-06 9 124535728 124535728 C T DAB2IP Missense_Mutation p.S946F 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GU-06 9 125315488 125315488 G A OR1N2 Missense_Mutation p.G14R 0.26 tolerated(0.35) benign(0) TCGA-EE-A2GU-06 9 125390894 125390894 G C OR1B1 Silent p.L307L 0.40 TCGA-EE-A2GU-06 9 126371733 126371733 G A DENND1A Silent p.I249I 0.19 TCGA-EE-A2GU-06 9 131379952 131379952 C T SPTAN1 Silent p.Y1797Y 0.30 TCGA-EE-A2GU-06 9 136597638 136597638 C T SARDH Silent p.E139E 0.22 TCGA-EE-A2GU-06 9 137776591 137776591 C T FCN2 Missense_Mutation p.P92S 0.21 tolerated(0.32) benign(0.05) TCGA-EE-A2GU-06 9 139379493 139379493 C T C9orf163 Missense_Mutation p.S198F 0.31 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A2GU-06 9 141016070 141016070 C T CACNA1B Silent p.F2213F 0.24 TCGA-EE-A2GU-06 9 21141465 21141465 C T IFNW1 Silent p.R35R 0.41 TCGA-EE-A2GU-06 9 22452016 22452016 G A DMRTA1 3'UTR 0.54 TCGA-EE-A2GU-06 9 36882077 36882077 G A PAX5 Silent p.L312L 0.36 TCGA-EE-A2GU-06 9 43625310 43625310 G T SPATA31A6 Missense_Mutation p.T1126N 0.33 deleterious(0.05) possibly_damaging(0.548) TCGA-EE-A2GU-06 9 6620207 6620207 C T GLDC Silent p.R149R 0.40 TCGA-EE-A2GU-06 9 77407591 77407591 C T TRPM6 Silent p.R829R 0.17 TCGA-EE-A2GU-06 9 78911597 78911597 G A PCSK5 Silent p.R1113R 0.40 TCGA-EE-A2GU-06 9 78973689 78973689 G A PCSK5 Missense_Mutation p.D1812N 0.26 tolerated(0.06) probably_damaging(0.972) TCGA-EE-A2GU-06 9 85627360 85627360 C T RASEF Missense_Mutation p.D278N 0.21 deleterious(0) possibly_damaging(0.579) TCGA-EE-A2GU-06 9 93375832 93375832 G A DIRAS2 Missense_Mutation p.S93F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 9 96031005 96031005 C T WNK2 Missense_Mutation p.S1337F 0.29 unknown(0) TCGA-EE-A2GU-06 9 99013703 99013703 G A HSD17B3 Silent p.I150I 0.40 TCGA-EE-A2GU-06 X 102334395 102334395 C T NXF3 Silent p.R409R 0.45 TCGA-EE-A2GU-06 X 104512202 104512202 A T IL1RAPL2 Silent p.R225R 0.32 TCGA-EE-A2GU-06 X 106093514 106093514 T G TBC1D8B Missense_Mutation p.D699E 0.45 tolerated(0.3) probably_damaging(0.999) TCGA-EE-A2GU-06 X 107821309 107821309 G A COL4A5 Missense_Mutation p.G216E 0.47 unknown(0) TCGA-EE-A2GU-06 X 122459949 122459949 G A GRIA3 Missense_Mutation p.G194E 0.36 tolerated(1) benign(0.008) TCGA-EE-A2GU-06 X 123517662 123517662 G A TENM1 Silent p.F2373F 0.48 TCGA-EE-A2GU-06 X 132439837 132439837 C T GPC4 Missense_Mutation p.R373H 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2GU-06 X 138670580 138670580 C T MCF2 Silent p.V872V 0.35 TCGA-EE-A2GU-06 X 140985455 140985455 C T MAGEC3 Missense_Mutation p.S590F 0.45 deleterious(0) possibly_damaging(0.852) TCGA-EE-A2GU-06 X 142795495 142795495 C T SPANXN2 Silent p.T61T 0.50 TCGA-EE-A2GU-06 X 150345178 150345178 G A GPR50 5'UTR 0.46 TCGA-EE-A2GU-06 X 150906979 150906979 G A CNGA2 Silent p.V8V 0.35 TCGA-EE-A2GU-06 X 150906982 150906982 G A CNGA2 Silent p.K9K 0.35 TCGA-EE-A2GU-06 X 151909310 151909310 G A CSAG1 3'UTR 0.58 TCGA-EE-A2GU-06 X 153073826 153073826 G A PDZD4 Silent p.V95V 0.38 TCGA-EE-A2GU-06 X 18936813 18936813 C A PHKA2 Missense_Mutation p.G708V 0.47 tolerated(0.05) probably_damaging(0.93) TCGA-EE-A2GU-06 X 299624 299624 G A PPP2R3B Silent p.I453I 0.41 TCGA-EE-A2GU-06 X 30577862 30577862 G A CXorf21 Missense_Mutation p.P204L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2GU-06 X 3241875 3241875 C T MXRA5 Silent p.R617R 0.47 TCGA-EE-A2GU-06 X 37029029 37029029 C T FAM47C Missense_Mutation p.S849L 0.37 tolerated(0.19) benign(0.184) TCGA-EE-A2GU-06 X 45010966 45010966 C A CXorf36 Missense_Mutation p.R411S 0.41 deleterious(0) possibly_damaging(0.493) TCGA-EE-A2GU-06 X 47103918 47103918 C T USP11 Silent p.N647N 0.44 TCGA-EE-A2GU-06 X 47978993 47978993 G A SSX6 RNA 0.47 TCGA-EE-A2GU-06 X 65259822 65259822 G A VSIG4 Silent p.L7L 0.60 TCGA-EE-A2GU-06 X 84634306 84634306 C T POF1B Missense_Mutation p.V52M 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2GU-06 X 86887330 86887330 G A KLHL4 Missense_Mutation p.G482E 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A2GU-06 X 86887333 86887333 G A KLHL4 Missense_Mutation p.G483E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 10 100012154 100012154 C T LOXL4 Missense_Mutation p.G636E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 10 100012155 100012155 C T LOXL4 Missense_Mutation p.G636R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 10 100017523 100017523 C T LOXL4 Missense_Mutation p.G382R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 10 100143357 100143357 A G PYROXD2 3'UTR 0.62 TCGA-EE-A2M5-06 10 101163320 101163320 C T GOT1 Missense_Mutation p.E289K 0.34 tolerated(0.46) benign(0.161) TCGA-EE-A2M5-06 10 102239754 102239754 G A WNT8B Missense_Mutation p.G76S 0.25 tolerated(0.37) benign(0.006) TCGA-EE-A2M5-06 10 104161508 104161508 G C NFKB2 Missense_Mutation p.G767A 0.17 tolerated(0.77) benign(0.04) TCGA-EE-A2M5-06 10 105798832 105798832 C T COL17A1 Missense_Mutation p.E982K 0.30 benign(0.032) TCGA-EE-A2M5-06 10 106139928 106139928 G A CCDC147 Missense_Mutation p.E439K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 10 106960951 106960951 G A SORCS3 Missense_Mutation p.R734Q 0.32 tolerated(0.15) benign(0.006) TCGA-EE-A2M5-06 10 107022168 107022168 G A SORCS3 Missense_Mutation p.E1175K 0.19 deleterious(0.03) benign(0.099) TCGA-EE-A2M5-06 10 111635351 111635351 G A XPNPEP1 Silent p.V442V 0.33 TCGA-EE-A2M5-06 10 111881987 111881987 C T ADD3 Silent p.S360S 0.31 TCGA-EE-A2M5-06 10 114044339 114044339 C T TECTB Silent p.I41I 0.27 TCGA-EE-A2M5-06 10 114901043 114901043 C T TCF7L2 Missense_Mutation p.P218L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 10 11985081 11985081 T A UPF2 Missense_Mutation p.E1087D 0.29 tolerated(0.51) probably_damaging(0.973) TCGA-EE-A2M5-06 10 12139837 12139837 C T DHTKD1 Silent p.L505L 0.28 TCGA-EE-A2M5-06 10 12206359 12206359 G A SEC61A2 Missense_Mutation p.G446E 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2M5-06 10 123600677 123600677 G A ATE1 Silent p.L359L 0.43 TCGA-EE-A2M5-06 10 124389817 124389817 C T DMBT1 Missense_Mutation p.H1817Y 0.29 tolerated(1) benign(0.013) TCGA-EE-A2M5-06 10 124594230 124594230 G A CUZD1 Silent p.I458I 0.31 TCGA-EE-A2M5-06 10 124596416 124596416 C T CUZD1 Missense_Mutation p.D250N 0.31 tolerated(0.14) probably_damaging(0.998) TCGA-EE-A2M5-06 10 124596417 124596417 T G CUZD1 Silent p.T249T 0.29 TCGA-EE-A2M5-06 10 125447638 125447638 G A GPR26 Missense_Mutation p.D326N 0.29 tolerated(0.29) benign(0.012) TCGA-EE-A2M5-06 10 126490351 126490351 G A FAM175B 5'Flank 0.33 TCGA-EE-A2M5-06 10 12867836 12867836 T C CAMK1D Intron 0.35 TCGA-EE-A2M5-06 10 128807059 128807059 C T DOCK1 Missense_Mutation p.P350L 0.20 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2M5-06 10 131666094 131666094 G A EBF3 Silent p.F279F 0.32 TCGA-EE-A2M5-06 10 133967453 133967453 G A JAKMIP3 Missense_Mutation p.E725K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 10 135345089 135345089 G A CYP2E1 Missense_Mutation p.G113E 0.18 deleterious(0) probably_damaging(0.977) TCGA-EE-A2M5-06 10 135440266 135440266 G A FRG2B 5'UTR 0.09 TCGA-EE-A2M5-06 10 1405873 1405873 G A ADARB2 Missense_Mutation p.R143W 0.50 deleterious(0) probably_damaging(0.986) TCGA-EE-A2M5-06 10 1405874 1405874 G A ADARB2 Silent p.Y142Y 0.45 TCGA-EE-A2M5-06 10 15255455 15255455 G A FAM171A1 Missense_Mutation p.S711F 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 10 15256467 15256467 G A FAM171A1 Missense_Mutation p.P374S 0.26 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A2M5-06 10 15256468 15256468 G A FAM171A1 Silent p.F373F 0.24 TCGA-EE-A2M5-06 10 15590465 15590465 T C ITGA8 Missense_Mutation p.T957A 0.26 deleterious(0.02) benign(0.109) TCGA-EE-A2M5-06 10 18270240 18270240 G A SLC39A12 Splice_Site p.X309_splice 0.21 TCGA-EE-A2M5-06 10 20357116 20357116 C T PLXDC2 Silent p.F163F 0.23 TCGA-EE-A2M5-06 10 21101732 21101732 G A NEBL Silent p.I828I 0.25 TCGA-EE-A2M5-06 10 21108351 21108351 G A NEBL Splice_Site p.X685_splice 0.32 TCGA-EE-A2M5-06 10 26465724 26465724 C T MYO3A Missense_Mutation p.S1463L 0.35 tolerated_low_confidence(0.64) benign(0) TCGA-EE-A2M5-06 10 31810669 31810669 C T ZEB1 Silent p.I803I 0.27 TCGA-EE-A2M5-06 10 32328322 32328322 G A KIF5B Missense_Mutation p.P109L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 10 32856770 32856770 C T CCDC7 Missense_Mutation p.S457L 0.36 deleterious(0.01) benign(0.121) TCGA-EE-A2M5-06 10 32978001 32978001 G A C10ORF68 Missense_Mutation p.E59K 0.19 tolerated(0.47) probably_damaging(0.953) TCGA-EE-A2M5-06 10 33018286 33018286 G A C10ORF68 Missense_Mutation p.D243N 0.20 tolerated(0.24) benign(0.277) TCGA-EE-A2M5-06 10 33218799 33218799 C T ITGB1 Silent p.E109E 0.28 TCGA-EE-A2M5-06 10 37431154 37431154 A C ANKRD30A Missense_Mutation p.E387D 0.17 tolerated(0.16) possibly_damaging(0.636) TCGA-EE-A2M5-06 10 37482000 37482000 G A ANKRD30A Missense_Mutation p.D785N 0.22 tolerated(0.18) benign(0.003) TCGA-EE-A2M5-06 10 37486386 37486386 G A ANKRD30A Silent p.K842K 0.23 TCGA-EE-A2M5-06 10 37506687 37506687 G A ANKRD30A Missense_Mutation p.E994K 0.19 tolerated(0.06) possibly_damaging(0.636) TCGA-EE-A2M5-06 10 37508310 37508310 C T ANKRD30A Missense_Mutation p.H1168Y 0.26 deleterious(0.03) benign(0.403) TCGA-EE-A2M5-06 10 45429120 45429120 A T TMEM72 Missense_Mutation p.E82V 0.35 deleterious(0.02) possibly_damaging(0.597) TCGA-EE-A2M5-06 10 46999436 46999436 G A GPRIN2 Missense_Mutation p.A186T 0.14 deleterious(0.01) benign(0.209) TCGA-EE-A2M5-06 10 48371385 48371385 C T ZNF488 Missense_Mutation p.R285C 0.27 deleterious(0.02) possibly_damaging(0.839) TCGA-EE-A2M5-06 10 48388759 48388759 C T RBP3 Missense_Mutation p.E707K 0.24 tolerated(0.08) benign(0.305) TCGA-EE-A2M5-06 10 50122012 50122012 C T LRRC18 Silent p.R63R 0.22 TCGA-EE-A2M5-06 10 50256574 50256574 C T VSTM4 Missense_Mutation p.G242S 0.33 tolerated(0.69) benign(0.26) TCGA-EE-A2M5-06 10 50396379 50396379 C T C10orf128 Translation_Start_Site p.M1? 0.36 tolerated_low_confidence(0.09) benign(0.216) TCGA-EE-A2M5-06 10 50952058 50952058 C A OGDHL Missense_Mutation p.D615Y 0.32 deleterious(0.01) benign(0.365) TCGA-EE-A2M5-06 10 51465504 51465504 G A AGAP7 Missense_Mutation p.P318S 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2M5-06 10 5238818 5238818 G A AKR1C4 5'UTR 0.36 TCGA-EE-A2M5-06 10 54531391 54531391 G A MBL2 Missense_Mutation p.S2F 0.42 tolerated(1) unknown(0) TCGA-EE-A2M5-06 10 55582235 55582235 G A PCDH15 Missense_Mutation p.P1753S 0.25 tolerated_low_confidence(0.37) unknown(0) TCGA-EE-A2M5-06 10 61574451 61574451 A T CCDC6 Missense_Mutation p.N215K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 10 61823930 61823930 C T ANK3 Missense_Mutation p.G4146R 0.31 probably_damaging(0.999) TCGA-EE-A2M5-06 10 61844448 61844448 C T ANK3 Missense_Mutation p.R1329Q 0.26 probably_damaging(0.997) TCGA-EE-A2M5-06 10 61946567 61946567 C T ANK3 Missense_Mutation p.G664E 0.29 probably_damaging(1) TCGA-EE-A2M5-06 10 62039349 62039349 C T ANK3 Missense_Mutation p.E55K 0.32 probably_damaging(0.943) TCGA-EE-A2M5-06 10 64159351 64159351 G A ZNF365 Intron 0.28 TCGA-EE-A2M5-06 10 64573881 64573881 G A EGR2 Missense_Mutation p.P173S 0.33 tolerated(0.32) probably_damaging(0.96) TCGA-EE-A2M5-06 10 64968437 64968437 C T JMJD1C Missense_Mutation p.D998N 0.26 tolerated(0.08) possibly_damaging(0.455) TCGA-EE-A2M5-06 10 67862957 67862957 G A CTNNA3 Silent p.V645V 0.19 TCGA-EE-A2M5-06 10 69934044 69934044 C T MYPN Missense_Mutation p.T732I 0.34 tolerated(0.64) benign(0.006) TCGA-EE-A2M5-06 10 70748929 70748929 G A KIAA1279 Missense_Mutation p.G114E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 10 71144154 71144154 C T HK1 Missense_Mutation p.R550C 0.27 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A2M5-06 10 72025858 72025858 G A NPFFR1 Silent p.T99T 0.25 TCGA-EE-A2M5-06 10 72517946 72517946 C T ADAMTS14 Missense_Mutation p.S1031F 0.40 tolerated(0.68) benign(0.006) TCGA-EE-A2M5-06 10 7262456 7262456 G A SFMBT2 Missense_Mutation p.A416V 0.24 tolerated(0.08) benign(0.215) TCGA-EE-A2M5-06 10 75406540 75406540 C T SYNPO2L Missense_Mutation p.R957Q 0.23 deleterious(0.01) benign(0.202) TCGA-EE-A2M5-06 10 75673753 75673753 G A PLAU Silent p.K232K 0.25 TCGA-EE-A2M5-06 10 77158601 77158601 G A ZNF503 Missense_Mutation p.P616L 0.33 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2M5-06 10 7860672 7860672 G A TAF3 5'UTR 0.22 TCGA-EE-A2M5-06 10 79566545 79566545 G A DLG5 Silent p.I1646I 0.39 TCGA-EE-A2M5-06 10 79782128 79782128 G A POLR3A Silent p.P220P 0.28 TCGA-EE-A2M5-06 10 79782129 79782129 G A POLR3A Missense_Mutation p.P220L 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 10 8115699 8115699 T C GATA3 Intron 0.32 TCGA-EE-A2M5-06 10 81317173 81317173 T G SFTPA2 Missense_Mutation p.K180T 0.23 deleterious(0.04) benign(0.265) TCGA-EE-A2M5-06 10 82039992 82039992 G A MAT1A Silent p.A162A 0.32 TCGA-EE-A2M5-06 10 82043777 82043777 C G MAT1A Missense_Mutation p.G63R 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 10 85933592 85933592 A T C10orf99 5'UTR 0.31 TCGA-EE-A2M5-06 10 85961648 85961648 G A CDHR1 Missense_Mutation p.R204Q 0.22 tolerated(0.24) benign(0.037) TCGA-EE-A2M5-06 10 85984339 85984339 A T LRIT2 Missense_Mutation p.F214L 0.24 tolerated(0.06) possibly_damaging(0.609) TCGA-EE-A2M5-06 10 86012759 86012759 G A RGR Missense_Mutation p.G173R 0.41 tolerated(0.05) benign(0.238) TCGA-EE-A2M5-06 10 86132173 86132173 A T CCSER2 Missense_Mutation p.E455D 0.22 tolerated(0.13) probably_damaging(0.995) TCGA-EE-A2M5-06 10 88769011 88769011 C T RP11-96C23.10 3'Flank 0.36 TCGA-EE-A2M5-06 10 88946957 88946957 G A FAM35A Missense_Mutation p.V770I 0.26 deleterious(0) benign(0.067) TCGA-EE-A2M5-06 10 88988218 88988218 G A NUTM2A Missense_Mutation p.G194D 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2M5-06 10 90428403 90428403 C T LIPF Silent p.F114F 0.25 TCGA-EE-A2M5-06 10 90503072 90503072 C T LIPK Silent p.F318F 0.29 TCGA-EE-A2M5-06 10 90665351 90665351 T G STAMBPL1 Missense_Mutation p.M61R 0.27 deleterious(0) probably_damaging(0.99) TCGA-EE-A2M5-06 10 92509249 92509249 G A HTR7 Silent p.T214T 0.37 TCGA-EE-A2M5-06 10 93751878 93751878 T G BTAF1 Missense_Mutation p.S953A 0.15 tolerated(0.8) benign(0.021) TCGA-EE-A2M5-06 10 93751879 93751879 C G BTAF1 Missense_Mutation p.S953C 0.15 tolerated(0.08) possibly_damaging(0.591) TCGA-EE-A2M5-06 10 93751880 93751880 C A BTAF1 Silent p.S953S 0.17 TCGA-EE-A2M5-06 10 95405749 95405749 C T PDE6C Missense_Mutation p.S627F 0.38 deleterious(0) probably_damaging(0.954) TCGA-EE-A2M5-06 10 95721272 95721272 C T PIPSL RNA 0.19 TCGA-EE-A2M5-06 10 95790750 95790750 G A PLCE1 5'UTR 0.33 TCGA-EE-A2M5-06 10 96454696 96454696 C T CYP2C18 Silent p.F168F 0.21 TCGA-EE-A2M5-06 10 96535171 96535171 G A CYP2C19 Missense_Mutation p.R119K 0.21 tolerated(0.33) benign(0.003) TCGA-EE-A2M5-06 10 96740948 96740948 C T CYP2C9 Nonsense_Mutation p.Q324* 0.25 TCGA-EE-A2M5-06 10 97779559 97779559 G A CC2D2B Missense_Mutation p.G253E 0.21 tolerated(0.24) benign(0.022) TCGA-EE-A2M5-06 10 98164993 98164993 A T TLL2 Silent p.L421L 0.37 TCGA-EE-A2M5-06 10 98188497 98188497 T G TLL2 Silent p.R177R 0.28 TCGA-EE-A2M5-06 10 98380283 98380283 G A PIK3AP1 Silent p.P589P 0.42 TCGA-EE-A2M5-06 11 100126527 100126527 G A CNTN5 Missense_Mutation p.E681K 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2M5-06 11 100169975 100169975 G A CNTN5 Missense_Mutation p.E823K 0.36 tolerated(0.61) probably_damaging(0.999) TCGA-EE-A2M5-06 11 1018215 1018215 G T MUC6 Missense_Mutation p.T1529N 0.28 unknown(0) TCGA-EE-A2M5-06 11 102743711 102743711 T C MMP12 RNA 0.35 TCGA-EE-A2M5-06 11 10582155 10582155 T A LYVE1 Missense_Mutation p.K197I 0.36 tolerated(0.44) benign(0.025) TCGA-EE-A2M5-06 11 107535844 107535844 G A ELMOD1 Missense_Mutation p.R309K 0.31 tolerated(1) benign(0.004) TCGA-EE-A2M5-06 11 108043607 108043607 G A NPAT Missense_Mutation p.P702S 0.27 tolerated(0.72) benign(0.135) TCGA-EE-A2M5-06 11 1080907 1080907 G A MUC2 Missense_Mutation p.E431K 0.29 probably_damaging(1) TCGA-EE-A2M5-06 11 108175548 108175548 C T ATM Silent p.S1881S 0.23 TCGA-EE-A2M5-06 11 10823032 10823032 A C EIF4G2 Intron 0.29 TCGA-EE-A2M5-06 11 108236211 108236211 C T ATM Silent p.F3049F 0.35 TCGA-EE-A2M5-06 11 108383402 108383402 C T EXPH5 Silent p.E944E 0.28 TCGA-EE-A2M5-06 11 111156615 111156615 C T C11orf53 Missense_Mutation p.P183S 0.38 tolerated(0.68) benign(0.187) TCGA-EE-A2M5-06 11 112086944 112086944 T C BCO2 Missense_Mutation p.V506A 0.29 tolerated(0.08) possibly_damaging(0.734) TCGA-EE-A2M5-06 11 113266842 113266842 C A ANKK1 Missense_Mutation p.L246I 0.24 deleterious(0.05) possibly_damaging(0.612) TCGA-EE-A2M5-06 11 114401625 114401625 C T NXPE1 5'UTR 0.42 TCGA-EE-A2M5-06 11 114453517 114453517 C T NXPE4 Missense_Mutation p.R108Q 0.29 tolerated(0.53) benign(0.057) TCGA-EE-A2M5-06 11 117329477 117329477 C T DSCAML1 Silent p.K1247K 0.27 TCGA-EE-A2M5-06 11 118827130 118827130 G A UPK2 Missense_Mutation p.A24T 0.26 tolerated(0.1) unknown(0) TCGA-EE-A2M5-06 11 118969169 118969169 G A DPAGT1 Silent p.S224S 0.28 TCGA-EE-A2M5-06 11 119056947 119056947 C T PDZD3 Intron 0.50 TCGA-EE-A2M5-06 11 119996560 119996560 G A TRIM29 Missense_Mutation p.P391L 0.25 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A2M5-06 11 119996561 119996561 G A TRIM29 Missense_Mutation p.P391S 0.27 tolerated(0.05) possibly_damaging(0.611) TCGA-EE-A2M5-06 11 121414426 121414426 G A SORL1 Missense_Mutation p.D619N 0.38 tolerated(0.36) benign(0.01) TCGA-EE-A2M5-06 11 121448082 121448082 G A SORL1 Missense_Mutation p.D1185N 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 11 123676588 123676588 G A OR6M1 Missense_Mutation p.P157L 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2M5-06 11 123676589 123676589 G A OR6M1 Missense_Mutation p.P157S 0.44 tolerated(0.14) possibly_damaging(0.836) TCGA-EE-A2M5-06 11 123813845 123813845 C T OR6T1 Missense_Mutation p.R234Q 0.33 tolerated(0.06) benign(0.274) TCGA-EE-A2M5-06 11 123847940 123847940 C T OR10S1 Silent p.R153R 0.29 TCGA-EE-A2M5-06 11 123900559 123900559 C T OR10G8 Missense_Mutation p.P77L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 11 124013187 124013187 C T VWA5A Nonsense_Mutation p.Q688* 0.36 TCGA-EE-A2M5-06 11 124135644 124135644 G A OR8G5 Missense_Mutation p.V308M 0.30 deleterious(0.03) possibly_damaging(0.622) TCGA-EE-A2M5-06 11 124310205 124310205 G T OR8B8 Nonsense_Mutation p.Y259* 0.32 TCGA-EE-A2M5-06 11 124440091 124440091 C T OR8A1 Missense_Mutation p.P43S 0.36 deleterious(0.01) benign(0.244) TCGA-EE-A2M5-06 11 124489711 124489711 G A PANX3 Silent p.K353K 0.32 TCGA-EE-A2M5-06 11 124545175 124545175 C T SPA17 Silent p.F5F 0.33 TCGA-EE-A2M5-06 11 124618586 124618586 G A VSIG2 Silent p.T220T 0.25 TCGA-EE-A2M5-06 11 124765494 124765494 C T ROBO4 Missense_Mutation p.E299K 0.36 tolerated(0.08) probably_damaging(0.954) TCGA-EE-A2M5-06 11 124951800 124951800 C T SLC37A2 Missense_Mutation p.P295S 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2M5-06 11 1258301 1258301 G A MUC5B Silent p.K1068K 0.24 TCGA-EE-A2M5-06 11 1268995 1268995 G A MUC5B Missense_Mutation p.E3629K 0.17 unknown(0) TCGA-EE-A2M5-06 11 128709860 128709860 G A KCNJ1 Silent p.F112F 0.33 TCGA-EE-A2M5-06 11 129312769 129312769 G T BARX2 Missense_Mutation p.Q176H 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 11 129795112 129795112 G A PRDM10 Nonsense_Mutation p.Q519* 0.36 TCGA-EE-A2M5-06 11 130341141 130341141 C T ADAMTS15 Silent p.S647S 0.26 TCGA-EE-A2M5-06 11 132307126 132307126 G A OPCML Silent p.I218I 0.23 TCGA-EE-A2M5-06 11 133714505 133714505 C T SPATA19 Missense_Mutation p.E56K 0.23 tolerated(0.39) benign(0.025) TCGA-EE-A2M5-06 11 133791010 133791010 C T IGSF9B Silent p.K870K 0.25 TCGA-EE-A2M5-06 11 13399896 13399896 G A ARNTL Missense_Mutation p.R475K 0.30 tolerated(0.53) benign(0.061) TCGA-EE-A2M5-06 11 13399897 13399897 G A ARNTL Silent p.R475R 0.30 TCGA-EE-A2M5-06 11 134241356 134241356 G A GLB1L2 Silent p.K466K 0.22 TCGA-EE-A2M5-06 11 134251915 134251915 G A B3GAT1 Silent p.L308L 0.32 TCGA-EE-A2M5-06 11 14853268 14853268 C T PDE3B Missense_Mutation p.P680L 0.26 deleterious(0) benign(0.14) TCGA-EE-A2M5-06 11 1651510 1651510 G A KRTAP5-5 Missense_Mutation p.G147E 0.37 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2M5-06 11 16872745 16872745 G A PLEKHA7 Missense_Mutation p.S230F 0.29 deleterious(0) probably_damaging(0.953) TCGA-EE-A2M5-06 11 17099283 17099283 C T RPS13 5'UTR 0.31 TCGA-EE-A2M5-06 11 17414625 17414625 C T ABCC8 Silent p.R1553R 0.32 TCGA-EE-A2M5-06 11 18134184 18134184 C T SAA3P RNA 0.18 TCGA-EE-A2M5-06 11 18327728 18327728 A G HPS5 Missense_Mutation p.F260L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 11 19735246 19735246 C T NAV2 Missense_Mutation p.P2L 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2M5-06 11 20648366 20648366 G A SLC6A5 Nonsense_Mutation p.W458* 0.32 TCGA-EE-A2M5-06 11 22242655 22242655 C T ANO5 Nonsense_Mutation p.Q65* 0.32 TCGA-EE-A2M5-06 11 2441489 2441489 C T TRPM5 Silent p.L204L 0.31 TCGA-EE-A2M5-06 11 2441525 2441525 C T TRPM5 Silent p.G192G 0.31 TCGA-EE-A2M5-06 11 2608862 2608862 G A KCNQ1 Silent p.R397R 0.28 TCGA-EE-A2M5-06 11 26584708 26584708 C T MUC15 Missense_Mutation p.D294N 0.25 tolerated(0.1) possibly_damaging(0.908) TCGA-EE-A2M5-06 11 26584715 26584715 C T MUC15 Silent p.R291R 0.27 TCGA-EE-A2M5-06 11 26621241 26621241 A T ANO3 Missense_Mutation p.I606F 0.41 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2M5-06 11 27679710 27679710 G A BDNF Silent p.R216R 0.29 TCGA-EE-A2M5-06 11 284312 284312 G A NLRP6 Missense_Mutation p.G762S 0.23 tolerated(0.3) benign(0.005) TCGA-EE-A2M5-06 11 293452 293452 C T ATHL1 Missense_Mutation p.P477L 0.27 deleterious(0) probably_damaging(0.973) TCGA-EE-A2M5-06 11 30033267 30033267 G A KCNA4 Missense_Mutation p.S320F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 11 31312262 31312262 G A DCDC1 Silent p.L298L 0.30 TCGA-EE-A2M5-06 11 31815066 31815066 T C PAX6 Missense_Mutation p.T332A 0.34 tolerated(0.49) benign(0.001) TCGA-EE-A2M5-06 11 32636158 32636158 A G CCDC73 Missense_Mutation p.V569A 0.32 tolerated(0.28) benign(0.009) TCGA-EE-A2M5-06 11 32955488 32955488 C T QSER1 Missense_Mutation p.P766L 0.30 deleterious(0.03) benign(0.357) TCGA-EE-A2M5-06 11 34916658 34916658 C T APIP Splice_Site p.X20_splice 0.23 TCGA-EE-A2M5-06 11 35336589 35336589 G A SLC1A2 Silent p.I97I 0.36 TCGA-EE-A2M5-06 11 35454294 35454294 G C PAMR1 Missense_Mutation p.F608L 0.36 tolerated(0.73) benign(0.003) TCGA-EE-A2M5-06 11 372752 372752 G A B4GALNT4 Missense_Mutation p.E116K 0.30 tolerated(0.11) benign(0.145) TCGA-EE-A2M5-06 11 3752715 3752715 T C NUP98 Missense_Mutation p.K546E 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 11 40135898 40135898 T C LRRC4C 3'UTR 0.24 TCGA-EE-A2M5-06 11 4095774 4095774 G A STIM1 Silent p.E278E 0.30 TCGA-EE-A2M5-06 11 43469660 43469660 C T TTC17 Missense_Mutation p.S925L 0.33 deleterious(0.01) benign(0.021) TCGA-EE-A2M5-06 11 45926794 45926794 C T MAPK8IP1 Missense_Mutation p.S686F 0.21 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 11 45926795 45926795 C T MAPK8IP1 Silent p.S686S 0.18 TCGA-EE-A2M5-06 11 46749618 46749618 C T F2 Silent p.V401V 0.41 TCGA-EE-A2M5-06 11 46890564 46890564 G A LRP4 Silent p.I1604I 0.23 TCGA-EE-A2M5-06 11 4703274 4703274 G A OR51E2 Missense_Mutation p.T223M 0.26 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2M5-06 11 48510616 48510616 C T OR4A47 Missense_Mutation p.S91F 0.28 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-EE-A2M5-06 11 4976459 4976459 G A OR51A2 Missense_Mutation p.P162L 0.15 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A2M5-06 11 50003455 50003455 G A OR4C12 Missense_Mutation p.L195F 0.33 deleterious_low_confidence(0.05) probably_damaging(0.958) TCGA-EE-A2M5-06 11 50003823 50003823 G A OR4C12 Missense_Mutation p.S72F 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-EE-A2M5-06 11 5068607 5068607 C T OR52J3 Silent p.I284I 0.34 TCGA-EE-A2M5-06 11 5345020 5345020 G A OR51B2 Missense_Mutation p.H170Y 0.24 deleterious(0.02) benign(0.111) TCGA-EE-A2M5-06 11 55032679 55032679 G A TRIM48 Silent p.K116K 0.24 TCGA-EE-A2M5-06 11 55038290 55038290 C T TRIM48 3'UTR 0.42 TCGA-EE-A2M5-06 11 55065456 55065456 C T TRIM51HP RNA 0.35 TCGA-EE-A2M5-06 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.36 TCGA-EE-A2M5-06 11 55136193 55136193 C T OR4A15 Silent p.F278F 0.26 TCGA-EE-A2M5-06 11 55339661 55339661 T A OR4C16 Missense_Mutation p.F20I 0.33 tolerated(0.19) benign(0.001) TCGA-EE-A2M5-06 11 55340503 55340503 G A OR4C16 Nonsense_Mutation p.W300* 0.32 TCGA-EE-A2M5-06 11 55371635 55371635 G A OR4C11 Missense_Mutation p.S72L 0.36 deleterious(0) probably_damaging(0.931) TCGA-EE-A2M5-06 11 55432857 55432857 C T OR4C6 Missense_Mutation p.S72L 0.25 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-EE-A2M5-06 11 5566205 5566205 G A OR52H1 Silent p.P183P 0.35 TCGA-EE-A2M5-06 11 55761862 55761862 C T OR5F1 Silent p.K80K 0.33 TCGA-EE-A2M5-06 11 55873324 55873324 G A OR8H2 Missense_Mutation p.G269E 0.25 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A2M5-06 11 56043277 56043277 T C OR5T1 Silent p.L55L 0.33 TCGA-EE-A2M5-06 11 56237116 56237116 C T OR5M3 Missense_Mutation p.M286I 0.36 tolerated(0.07) benign(0.001) TCGA-EE-A2M5-06 11 563562 563562 C T RASSF7 Missense_Mutation p.P347S 0.14 tolerated_low_confidence(0.05) benign(0.011) TCGA-EE-A2M5-06 11 56949561 56949561 C T LRRC55 Missense_Mutation p.S65F 0.25 tolerated(0.73) benign(0.176) TCGA-EE-A2M5-06 11 57004500 57004500 G A APLNR 5'UTR 0.25 TCGA-EE-A2M5-06 11 57004501 57004501 G A APLNR 5'UTR 0.25 TCGA-EE-A2M5-06 11 57076696 57076696 G A TNKS1BP1 Silent p.D1163D 0.37 TCGA-EE-A2M5-06 11 57310456 57310456 G A SMTNL1 Missense_Mutation p.R132K 0.36 tolerated_low_confidence(0.51) benign(0.002) TCGA-EE-A2M5-06 11 57313408 57313408 G A SMTNL1 Silent p.G342G 0.25 TCGA-EE-A2M5-06 11 57381837 57381837 G A SERPING1 Missense_Mutation p.G429E 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 11 5799030 5799030 G A OR52N5 Missense_Mutation p.P279S 0.31 deleterious(0.01) possibly_damaging(0.483) TCGA-EE-A2M5-06 11 57996128 57996128 C T OR10Q1 Missense_Mutation p.E74K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 11 58275298 58275298 C T OR5B21 Missense_Mutation p.G94E 0.36 tolerated_low_confidence(0.1) benign(0.028) TCGA-EE-A2M5-06 11 58275299 58275299 C T OR5B21 Missense_Mutation p.G94R 0.31 deleterious_low_confidence(0.02) benign(0.046) TCGA-EE-A2M5-06 11 58602012 58602012 G A GLYATL2 Missense_Mutation p.H259Y 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A2M5-06 11 5862608 5862608 G A OR52E6 Missense_Mutation p.R174C 0.31 tolerated(0.06) benign(0.002) TCGA-EE-A2M5-06 11 5878024 5878024 C T OR52E8 Silent p.Q303Q 0.25 TCGA-EE-A2M5-06 11 5878411 5878411 G A OR52E8 Silent p.F174F 0.37 TCGA-EE-A2M5-06 11 58919326 58919326 C T FAM111A Missense_Mutation p.S62L 0.38 tolerated(0.6) benign(0.012) TCGA-EE-A2M5-06 11 59189524 59189524 G A OR5A2 Silent p.A301A 0.28 TCGA-EE-A2M5-06 11 59224522 59224522 T G OR4D6 Missense_Mutation p.V30G 0.35 deleterious(0.04) benign(0.054) TCGA-EE-A2M5-06 11 59245628 59245628 C T OR4D10 Silent p.S242S 0.24 TCGA-EE-A2M5-06 11 59271645 59271645 G A OR4D11 Missense_Mutation p.M199I 0.32 tolerated(0.16) benign(0.068) TCGA-EE-A2M5-06 11 60558512 60558512 G A MS4A10 Silent p.K83K 0.23 TCGA-EE-A2M5-06 11 60892556 60892556 C T CD5 Silent p.P444P 0.22 TCGA-EE-A2M5-06 11 61018705 61018705 C T PGA5 Silent p.T373T 0.35 TCGA-EE-A2M5-06 11 61106612 61106612 C T DAK Silent p.L90L 0.36 TCGA-EE-A2M5-06 11 61291412 61291412 C T SYT7 Missense_Mutation p.G340E 0.38 tolerated(0.12) benign(0.07) TCGA-EE-A2M5-06 11 62010789 62010789 T G SCGB1D2 Silent p.V28V 0.19 TCGA-EE-A2M5-06 11 62285731 62285731 G T AHNAK Silent p.S5386S 0.26 TCGA-EE-A2M5-06 11 62290874 62290874 G A AHNAK Missense_Mutation p.S3672F 0.29 probably_damaging(0.986) TCGA-EE-A2M5-06 11 6238931 6238931 G A FAM160A2 Missense_Mutation p.H643Y 0.38 tolerated(0.64) benign(0) TCGA-EE-A2M5-06 11 62550287 62550298 TTGGCTGGAAGG - TAF6L Splice_Site p.X317_splice 0.13 TCGA-EE-A2M5-06 11 63129936 63129936 G A SLC22A10 3'UTR 0.24 TCGA-EE-A2M5-06 11 63312210 63312210 G A RARRES3 Missense_Mutation p.S79N 0.34 deleterious(0.02) benign(0.342) TCGA-EE-A2M5-06 11 64457898 64457898 C T NRXN2 Missense_Mutation p.D277N 0.42 tolerated_low_confidence(0.12) benign(0) TCGA-EE-A2M5-06 11 64662409 64662409 G A ATG2A 3'UTR 0.35 TCGA-EE-A2M5-06 11 64678702 64678702 G A ATG2A Missense_Mutation p.S425L 0.30 tolerated(0.74) benign(0.005) TCGA-EE-A2M5-06 11 64693246 64693246 C T PPP2R5B Missense_Mutation p.P14S 0.58 tolerated(0.2) possibly_damaging(0.641) TCGA-EE-A2M5-06 11 65637650 65637650 G A EFEMP2 Silent p.S183S 0.24 TCGA-EE-A2M5-06 11 65637651 65637651 G T EFEMP2 Missense_Mutation p.S183Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 11 65638023 65638023 G A EFEMP2 Silent p.I158I 0.32 TCGA-EE-A2M5-06 11 65652610 65652610 G A FIBP Nonsense_Mutation p.Q239* 0.26 TCGA-EE-A2M5-06 11 65784354 65784354 C T CATSPER1 3'UTR 0.32 TCGA-EE-A2M5-06 11 65810824 65810824 G A GAL3ST3 Silent p.I150I 0.45 TCGA-EE-A2M5-06 11 66006630 66006630 C T PACS1 Missense_Mutation p.P771S 0.33 tolerated(0.47) benign(0.216) TCGA-EE-A2M5-06 11 66190310 66190310 C T NPAS4 Missense_Mutation p.P199L 0.26 tolerated(0.33) benign(0.014) TCGA-EE-A2M5-06 11 66206157 66206157 G A MRPL11 Silent p.I23I 0.31 TCGA-EE-A2M5-06 11 66260610 66260612 CGC AG DPP3 Frame_Shift_Del p.T419Kfs*58 0.16 TCGA-EE-A2M5-06 11 66631373 66631373 G A PC Nonsense_Mutation p.Q414* 0.31 TCGA-EE-A2M5-06 11 67052645 67052645 A T ADRBK1 Missense_Mutation p.I631F 0.31 deleterious(0) benign(0.189) TCGA-EE-A2M5-06 11 67191509 67191509 G A CARNS1 Missense_Mutation p.A764T 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2M5-06 11 67815412 67815412 G A TCIRG1 Silent p.L509L 0.35 TCGA-EE-A2M5-06 11 67815413 67815413 G A TCIRG1 Missense_Mutation p.G510R 0.37 deleterious(0.02) benign(0.35) TCGA-EE-A2M5-06 11 67816408 67816408 C T TCIRG1 Silent p.V539V 0.32 TCGA-EE-A2M5-06 11 67888352 67888352 A C CHKA Missense_Mutation p.F98C 0.35 deleterious(0) probably_damaging(0.979) TCGA-EE-A2M5-06 11 6816667 6816667 C T OR6A2 Silent p.Q91Q 0.31 TCGA-EE-A2M5-06 11 68668047 68668047 A G MRPL21 Missense_Mutation p.F39L 0.30 tolerated(0.54) benign(0.001) TCGA-EE-A2M5-06 11 6977829 6977829 C T ZNF215 3'UTR 0.35 TCGA-EE-A2M5-06 11 70208469 70208469 C T PPFIA1 Silent p.L914L 0.35 TCGA-EE-A2M5-06 11 70332129 70332129 G A SHANK2 Silent p.I1424I 0.41 TCGA-EE-A2M5-06 11 7063775 7063775 G A NLRP14 Missense_Mutation p.G173D 0.32 tolerated(0.11) benign(0.022) TCGA-EE-A2M5-06 11 71260244 71260244 G A KRTAP5-9 3'UTR 0.22 TCGA-EE-A2M5-06 11 72425353 72425353 C T ARAP1 Missense_Mutation p.E175K 0.32 tolerated(0.33) benign(0.074) TCGA-EE-A2M5-06 11 72945204 72945204 G A P2RY2 5'UTR 0.33 TCGA-EE-A2M5-06 11 73022671 73022671 C T ARHGEF17 Silent p.P996P 0.29 TCGA-EE-A2M5-06 11 74168498 74168498 C T KCNE3 Silent p.L37L 0.36 TCGA-EE-A2M5-06 11 75727929 75727929 C T UVRAG Silent p.F377F 0.30 TCGA-EE-A2M5-06 11 76062874 76062874 G A PRKRIR Silent p.L440L 0.30 TCGA-EE-A2M5-06 11 7690543 7690543 G A CYB5R2 Missense_Mutation p.P94L 0.29 deleterious(0) probably_damaging(0.943) TCGA-EE-A2M5-06 11 7723023 7723023 C T OVCH2 Splice_Site p.X187_splice 0.33 TCGA-EE-A2M5-06 11 7726135 7726135 C T OVCH2 Missense_Mutation p.E59K 0.46 tolerated(0.65) benign(0.017) TCGA-EE-A2M5-06 11 77378399 77378399 G A RSF1 Missense_Mutation p.R1297C 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 11 774085 774085 G A PDDC1 Missense_Mutation p.T57I 0.24 deleterious(0) benign(0.167) TCGA-EE-A2M5-06 11 78412931 78412931 T C TENM4 Missense_Mutation p.Y1576C 0.35 deleterious(0) probably_damaging(0.95) TCGA-EE-A2M5-06 11 8013684 8013684 T A EIF3F Silent p.V163V 0.23 TCGA-EE-A2M5-06 11 82644813 82644813 C T C11orf82 Silent p.F811F 0.30 TCGA-EE-A2M5-06 11 82877735 82877735 C T PCF11 Missense_Mutation p.S599F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 11 85346834 85346834 C T TMEM126B Intron 0.25 TCGA-EE-A2M5-06 11 86123497 86123497 C T CCDC81 Silent p.S429S 0.20 TCGA-EE-A2M5-06 11 86160976 86160976 G A ME3 Silent p.A362A 0.39 TCGA-EE-A2M5-06 11 89407312 89407312 T G FOLH1B RNA 0.26 TCGA-EE-A2M5-06 11 93487129 93487129 G A C11orf54 Missense_Mutation p.E86K 0.29 tolerated(0.44) benign(0.005) TCGA-EE-A2M5-06 11 93837739 93837739 G A HEPHL1 Missense_Mutation p.G910R 0.29 deleterious(0.03) possibly_damaging(0.803) TCGA-EE-A2M5-06 11 93844872 93844872 G A HEPHL1 Missense_Mutation p.E1098K 0.36 tolerated(0.22) benign(0.004) TCGA-EE-A2M5-06 11 9838486 9838486 C T SBF2 Silent p.K1293K 0.37 TCGA-EE-A2M5-06 12 101017784 101017784 A G GAS2L3 Missense_Mutation p.N401D 0.30 tolerated(0.16) benign(0.004) TCGA-EE-A2M5-06 12 101333228 101333228 A G ANO4 Missense_Mutation p.E64G 0.09 tolerated(0.18) benign(0.036) TCGA-EE-A2M5-06 12 102811659 102811659 C T IGF1 Silent p.K175K 0.29 TCGA-EE-A2M5-06 12 102813396 102813396 C T IGF1 Missense_Mutation p.R98Q 0.31 tolerated(0.64) benign(0.277) TCGA-EE-A2M5-06 12 104187199 104187199 G A NT5DC3 Silent p.P302P 0.30 TCGA-EE-A2M5-06 12 10541474 10541474 C T KLRK1 Intron 0.25 TCGA-EE-A2M5-06 12 106772061 106772061 T G POLR3B Silent p.V171V 0.31 TCGA-EE-A2M5-06 12 107114653 107114653 C T RFX4 Silent p.F459F 0.35 TCGA-EE-A2M5-06 12 108012029 108012029 G A BTBD11 Missense_Mutation p.E776K 0.21 tolerated(0.33) benign(0.4) TCGA-EE-A2M5-06 12 109288048 109288048 G A DAO Missense_Mutation p.E173K 0.24 tolerated(0.82) benign(0.003) TCGA-EE-A2M5-06 12 109947476 109947476 C T UBE3B Silent p.F566F 0.36 TCGA-EE-A2M5-06 12 111350900 111350900 C T MYL2 Silent p.E134E 0.39 TCGA-EE-A2M5-06 12 112481521 112481521 C T NAA25 Missense_Mutation p.V720I 0.28 tolerated(0.35) benign(0.015) TCGA-EE-A2M5-06 12 112481522 112481522 C T NAA25 Silent p.G719G 0.29 TCGA-EE-A2M5-06 12 112940036 112940036 G T PTPN11 Missense_Mutation p.C563F 0.31 tolerated(0.62) possibly_damaging(0.806) TCGA-EE-A2M5-06 12 113496250 113496250 G A DTX1 Missense_Mutation p.D85N 0.38 deleterious(0.02) benign(0.043) TCGA-EE-A2M5-06 12 113534574 113534574 A C DTX1 Missense_Mutation p.T565P 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 12 113645520 113645520 G A IQCD Missense_Mutation p.S151F 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 12 114395759 114395759 G A RBM19 Missense_Mutation p.S223F 0.35 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A2M5-06 12 11546203 11546203 C T PRB2 Missense_Mutation p.G270E 0.26 deleterious(0.02) unknown(0) TCGA-EE-A2M5-06 12 117465849 117465849 C T FBXW8 Missense_Mutation p.R557C 0.21 tolerated(0.2) benign(0.004) TCGA-EE-A2M5-06 12 117685251 117685251 C T NOS1 Missense_Mutation p.E943K 0.33 tolerated(0.43) benign(0.222) TCGA-EE-A2M5-06 12 118199001 118199001 G A KSR2 Silent p.I267I 0.33 TCGA-EE-A2M5-06 12 118199236 118199236 G A KSR2 Missense_Mutation p.P189L 0.36 deleterious(0.03) benign(0.001) TCGA-EE-A2M5-06 12 119926649 119926649 G C CCDC60 Missense_Mutation p.V179L 0.33 tolerated(0.42) benign(0.05) TCGA-EE-A2M5-06 12 119943007 119943007 C T CCDC60 Missense_Mutation p.S261L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 12 120204947 120204947 G A CIT Nonsense_Mutation p.Q750* 0.33 TCGA-EE-A2M5-06 12 121093974 121093974 G A CABP1 Intron 0.30 TCGA-EE-A2M5-06 12 121104736 121104736 C T CABP1 3'UTR 0.36 TCGA-EE-A2M5-06 12 121157725 121157725 C T UNC119B Missense_Mutation p.R216C 0.37 tolerated(0.09) probably_damaging(0.97) TCGA-EE-A2M5-06 12 121469317 121469317 C T OASL Silent p.Q195Q 0.34 TCGA-EE-A2M5-06 12 123187473 123187473 C T HCAR2 Missense_Mutation p.V120M 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2M5-06 12 123463551 123463551 C T OGFOD2 Silent p.L201L 0.32 TCGA-EE-A2M5-06 12 123497270 123497270 G A PITPNM2 Missense_Mutation p.P102L 0.32 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M5-06 12 124257439 124257439 C T DNAH10 Missense_Mutation p.P91L 0.31 benign(0.035) TCGA-EE-A2M5-06 12 124305290 124305290 C T DNAH10 Silent p.L1270L 0.37 TCGA-EE-A2M5-06 12 124330207 124330207 G A DNAH10 Nonsense_Mutation p.W1689* 0.41 TCGA-EE-A2M5-06 12 124398873 124398873 C T DNAH10 Intron 0.33 TCGA-EE-A2M5-06 12 124401023 124401023 C T DNAH10 Missense_Mutation p.P3463L 0.30 possibly_damaging(0.716) TCGA-EE-A2M5-06 12 126003982 126003982 C T TMEM132B Intron 0.31 TCGA-EE-A2M5-06 12 126138696 126138696 G A TMEM132B Missense_Mutation p.G893R 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2M5-06 12 126139205 126139205 G A TMEM132B Silent p.G1062G 0.38 TCGA-EE-A2M5-06 12 130927050 130927050 C T RIMBP2 Missense_Mutation p.D266N 0.35 deleterious(0.04) benign(0.071) TCGA-EE-A2M5-06 12 133201277 133201277 G A POLE 3'UTR 0.30 TCGA-EE-A2M5-06 12 133202801 133202801 G A POLE Nonsense_Mutation p.R2145* 0.32 TCGA-EE-A2M5-06 12 133202802 133202802 G A POLE Silent p.F2144F 0.30 TCGA-EE-A2M5-06 12 133363077 133363077 C T GOLGA3 Missense_Mutation p.E991K 0.24 deleterious(0) probably_damaging(0.947) TCGA-EE-A2M5-06 12 13761739 13761739 C T GRIN2B Missense_Mutation p.G603D 0.19 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2M5-06 12 13761740 13761740 C T GRIN2B Missense_Mutation p.G603S 0.21 deleterious(0.01) possibly_damaging(0.68) TCGA-EE-A2M5-06 12 14774018 14774018 G A GUCY2C Missense_Mutation p.L912F 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M5-06 12 14849442 14849442 C T GUCY2C 5'UTR 0.38 TCGA-EE-A2M5-06 12 15261988 15261988 G A RERG 3'UTR 0.34 TCGA-EE-A2M5-06 12 1967746 1967746 C T CACNA2D4 Missense_Mutation p.E669K 0.34 tolerated(0.06) benign(0.037) TCGA-EE-A2M5-06 12 21229479 21229479 G A SLCO1B7 Missense_Mutation p.R567K 0.35 deleterious(0) probably_damaging(0.99) TCGA-EE-A2M5-06 12 21472381 21472381 G A SLCO1A2 Intron 0.25 TCGA-EE-A2M5-06 12 21661471 21661471 T G GOLT1B Missense_Mutation p.I91S 0.24 tolerated(0.44) benign(0.004) TCGA-EE-A2M5-06 12 25031472 25031472 C T BCAT1 Missense_Mutation p.G180R 0.28 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A2M5-06 12 25254256 25254256 G A LRMP Missense_Mutation p.D296N 0.32 deleterious(0.04) benign(0.053) TCGA-EE-A2M5-06 12 27089526 27089526 G A ASUN Missense_Mutation p.P71S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 12 2714934 2714934 C T CACNA1C Silent p.I1066I 0.25 TCGA-EE-A2M5-06 12 27235448 27235448 G C C12orf71 5'Flank 0.29 TCGA-EE-A2M5-06 12 2797631 2797631 C T CACNA1C Silent p.L1983L 0.22 TCGA-EE-A2M5-06 12 2968099 2968099 C T FOXM1 Missense_Mutation p.S704N 0.32 tolerated(0.8) benign(0.044) TCGA-EE-A2M5-06 12 29786248 29786248 G A TMTC1 Silent p.L320L 0.35 TCGA-EE-A2M5-06 12 32491907 32491907 C T BICD1 Missense_Mutation p.P920S 0.24 tolerated_low_confidence(0.06) benign(0.022) TCGA-EE-A2M5-06 12 33579230 33579230 C T SYT10 Missense_Mutation p.E118K 0.31 tolerated(0.56) benign(0.215) TCGA-EE-A2M5-06 12 34175405 34175405 C T ALG10 5'UTR 0.32 TCGA-EE-A2M5-06 12 39760883 39760883 G A KIF21A Silent p.A228A 0.22 TCGA-EE-A2M5-06 12 4479634 4479634 G A FGF23 Missense_Mutation p.P211S 0.32 tolerated_low_confidence(0.11) benign(0.006) TCGA-EE-A2M5-06 12 4553335 4553335 G A FGF6 Silent p.F138F 0.24 TCGA-EE-A2M5-06 12 4554514 4554514 C T FGF6 Missense_Mutation p.E75K 0.35 deleterious(0.05) probably_damaging(0.98) TCGA-EE-A2M5-06 12 46320912 46320912 C T SCAF11 Missense_Mutation p.E858K 0.26 deleterious(0) possibly_damaging(0.867) TCGA-EE-A2M5-06 12 46757533 46757533 G C SLC38A2 Missense_Mutation p.L344V 0.19 deleterious(0.05) possibly_damaging(0.513) TCGA-EE-A2M5-06 12 47628996 47628996 A G PCED1B Silent p.A50A 0.23 TCGA-EE-A2M5-06 12 48250947 48250947 G A VDR Missense_Mutation p.S233F 0.38 deleterious(0.01) possibly_damaging(0.859) TCGA-EE-A2M5-06 12 48383031 48383031 G A COL2A1 Missense_Mutation p.P368S 0.28 unknown(0) TCGA-EE-A2M5-06 12 4870257 4870257 G A GALNT8 Nonsense_Mutation p.W436* 0.41 TCGA-EE-A2M5-06 12 48866508 48866508 G A ANP32D Missense_Mutation p.E21K 0.27 deleterious(0.01) benign(0.059) TCGA-EE-A2M5-06 12 49237790 49237790 G A DDX23 Missense_Mutation p.R85W 0.28 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M5-06 12 49239535 49239535 G A DDX23 Missense_Mutation p.R11C 0.34 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M5-06 12 49433611 49433611 G A KMT2D Missense_Mutation p.P2648S 0.42 benign(0.218) TCGA-EE-A2M5-06 12 49434302 49434302 G A KMT2D Silent p.S2417S 0.24 TCGA-EE-A2M5-06 12 50190622 50190622 C T NCKAP5L Missense_Mutation p.A341T 0.28 tolerated_low_confidence(0.13) benign(0.329) TCGA-EE-A2M5-06 12 50383957 50383957 A T RACGAP1 3'UTR 0.26 TCGA-EE-A2M5-06 12 51207804 51207804 C T ATF1 Missense_Mutation p.P114S 0.33 tolerated(0.16) benign(0.026) TCGA-EE-A2M5-06 12 51207805 51207805 C T ATF1 Missense_Mutation p.P114L 0.33 deleterious(0.04) benign(0.193) TCGA-EE-A2M5-06 12 5154998 5154998 C T KCNA5 Missense_Mutation p.S562F 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 12 51754508 51754508 G A GALNT6 Silent p.F388F 0.24 TCGA-EE-A2M5-06 12 51754511 51754511 G A GALNT6 Silent p.S387S 0.24 TCGA-EE-A2M5-06 12 52699157 52699157 G A KRT86 Missense_Mutation p.R290Q 0.27 deleterious(0.03) benign(0.055) TCGA-EE-A2M5-06 12 52699158 52699158 G A KRT86 Silent p.R290R 0.26 TCGA-EE-A2M5-06 12 52788775 52788775 G A KRT82 Missense_Mutation p.P509L 0.30 tolerated_low_confidence(0.18) benign(0) TCGA-EE-A2M5-06 12 52864383 52864383 T G KRT6C Missense_Mutation p.H370P 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2M5-06 12 52942560 52942560 G A KRT71 Silent p.A246A 0.35 TCGA-EE-A2M5-06 12 53072441 53072441 A T KRT1 Missense_Mutation p.F231I 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 12 53216910 53216910 C T KRT79 Silent p.K419K 0.36 TCGA-EE-A2M5-06 12 53233556 53233556 C T KRT78 Silent p.E420E 0.39 TCGA-EE-A2M5-06 12 53240038 53240038 C T KRT78 Silent p.E233E 0.33 TCGA-EE-A2M5-06 12 53621185 53621185 G A RARG Silent p.L49L 0.30 TCGA-EE-A2M5-06 12 53722077 53722077 G A SP7 Silent p.P383P 0.33 TCGA-EE-A2M5-06 12 54369011 54369011 G A HOXC11 Silent p.Q243Q 0.37 TCGA-EE-A2M5-06 12 54427174 54427174 G A HOXC5 Missense_Mutation p.E90K 0.45 tolerated(0.84) benign(0.086) TCGA-EE-A2M5-06 12 55039462 55039462 C T DCD Missense_Mutation p.E43K 0.27 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2M5-06 12 56031539 56031539 C T OR10P1 Silent p.P288P 0.30 TCGA-EE-A2M5-06 12 56182877 56182877 G A SARNP Silent p.V161V 0.26 TCGA-EE-A2M5-06 12 56233375 56233375 C T MMP19 Missense_Mutation p.R224Q 0.24 tolerated(0.46) probably_damaging(0.957) TCGA-EE-A2M5-06 12 56548957 56548957 G A MYL6B Silent p.K107K 0.37 TCGA-EE-A2M5-06 12 56622898 56622898 C T NABP2 Silent p.I179I 0.31 TCGA-EE-A2M5-06 12 56628646 56628646 G A SLC39A5 Silent p.L170L 0.35 TCGA-EE-A2M5-06 12 57600439 57600439 C T LRP1 Missense_Mutation p.S3925F 0.31 probably_damaging(0.994) TCGA-EE-A2M5-06 12 57619147 57619147 C T NXPH4 Silent p.L182L 0.27 TCGA-EE-A2M5-06 12 57843232 57843232 C T INHBC Silent p.L162L 0.32 TCGA-EE-A2M5-06 12 57866353 57866353 G A ARHGAP9 Missense_Mutation p.P715S 0.35 tolerated(0.14) probably_damaging(0.977) TCGA-EE-A2M5-06 12 57939822 57939822 C G DCTN2 Missense_Mutation p.E32Q 0.23 tolerated(0.58) benign(0.016) TCGA-EE-A2M5-06 12 58200210 58200210 G A AVIL Missense_Mutation p.S535F 0.40 deleterious(0) probably_damaging(0.953) TCGA-EE-A2M5-06 12 6457279 6457279 G A SCNN1A Silent p.S649S 0.25 TCGA-EE-A2M5-06 12 64697548 64697548 T A C12orf56 Missense_Mutation p.K167I 0.19 deleterious(0.01) benign(0.394) TCGA-EE-A2M5-06 12 6703773 6703773 G A CHD4 Missense_Mutation p.T722I 0.28 deleterious(0.02) possibly_damaging(0.86) TCGA-EE-A2M5-06 12 6753565 6753565 C T ACRBP Missense_Mutation p.E228K 0.28 tolerated(0.33) possibly_damaging(0.762) TCGA-EE-A2M5-06 12 69983283 69983283 C T CCT2 Silent p.F155F 0.30 TCGA-EE-A2M5-06 12 70049395 70049395 C T BEST3 Silent p.R433R 0.34 TCGA-EE-A2M5-06 12 70747731 70747731 C T CNOT2 3'UTR 0.35 TCGA-EE-A2M5-06 12 70964929 70964929 G A PTPRB Missense_Mutation p.H1083Y 0.29 tolerated(1) benign(0.005) TCGA-EE-A2M5-06 12 71286603 71286603 T A PTPRR Missense_Mutation p.E71D 0.37 deleterious_low_confidence(0.03) benign(0.001) TCGA-EE-A2M5-06 12 7177206 7177206 G A C1S Missense_Mutation p.G440R 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 12 71977872 71977872 C T LGR5 Silent p.T694T 0.26 TCGA-EE-A2M5-06 12 7280959 7280959 G A RBP5 Silent p.I43I 0.37 TCGA-EE-A2M5-06 12 72866880 72866880 G A TRHDE Missense_Mutation p.E457K 0.22 deleterious(0.02) probably_damaging(0.938) TCGA-EE-A2M5-06 12 7586192 7586192 C T CD163L1 Missense_Mutation p.D75N 0.32 tolerated(0.26) probably_damaging(0.994) TCGA-EE-A2M5-06 12 7640255 7640255 G A CD163 Missense_Mutation p.R584C 0.38 deleterious(0) probably_damaging(0.991) TCGA-EE-A2M5-06 12 78400637 78400637 C T NAV3 Missense_Mutation p.P440L 0.22 deleterious(0.01) possibly_damaging(0.798) TCGA-EE-A2M5-06 12 7867807 7867807 G A DPPA3 Silent p.L37L 0.40 TCGA-EE-A2M5-06 12 81647105 81647105 C T ACSS3 Missense_Mutation p.T580I 0.32 deleterious(0.04) benign(0.004) TCGA-EE-A2M5-06 12 81734989 81734989 T C PPFIA2 Splice_Site p.X755_splice 0.29 TCGA-EE-A2M5-06 12 85518099 85518099 C T LRRIQ1 Missense_Mutation p.S1270F 0.30 tolerated(0.14) benign(0.048) TCGA-EE-A2M5-06 12 8758041 8758041 G A AICDA Missense_Mutation p.S66L 0.25 tolerated(0.07) benign(0.073) TCGA-EE-A2M5-06 12 88383058 88383058 T A C12orf50 Missense_Mutation p.K228I 0.27 deleterious(0.02) benign(0.056) TCGA-EE-A2M5-06 12 88391951 88391951 T G C12orf50 Missense_Mutation p.K50N 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2M5-06 12 88542072 88542072 C T TMTC3 5'UTR 0.29 TCGA-EE-A2M5-06 12 8926281 8926281 C T RIMKLB Silent p.D354D 0.21 TCGA-EE-A2M5-06 12 8926282 8926282 C T RIMKLB Missense_Mutation p.P355S 0.21 deleterious_low_confidence(0.02) benign(0.221) TCGA-EE-A2M5-06 12 8995898 8995898 G A A2ML1 Missense_Mutation p.D473N 0.24 deleterious(0.04) probably_damaging(0.956) TCGA-EE-A2M5-06 12 91366696 91366696 T C EPYC Silent p.E134E 0.31 TCGA-EE-A2M5-06 12 9305511 9305511 C T PZP Missense_Mutation p.D1344N 0.28 tolerated(0.23) possibly_damaging(0.516) TCGA-EE-A2M5-06 12 94975716 94975716 G A TMCC3 Missense_Mutation p.S226F 0.38 deleterious(0.05) probably_damaging(0.932) TCGA-EE-A2M5-06 12 98927237 98927237 C T TMPO Missense_Mutation p.P401L 0.31 deleterious_low_confidence(0) benign(0.115) TCGA-EE-A2M5-06 13 101997716 101997716 C T NALCN Missense_Mutation p.E234K 0.22 tolerated(0.57) benign(0.088) TCGA-EE-A2M5-06 13 103705039 103705039 G A SLC10A2 Silent p.L172L 0.24 TCGA-EE-A2M5-06 13 106142232 106142232 G A DAOA Intron 0.34 TCGA-EE-A2M5-06 13 109772717 109772717 G A MYO16 Splice_Site p.X1125_splice 0.26 TCGA-EE-A2M5-06 13 111138126 111138126 C T COL4A2 Silent p.F1050F 0.21 TCGA-EE-A2M5-06 13 113851353 113851353 G A PCID2 Silent p.L135L 0.39 TCGA-EE-A2M5-06 13 113975755 113975755 C T LAMP1 Nonsense_Mutation p.Q305* 0.25 TCGA-EE-A2M5-06 13 114150193 114150193 C T TMCO3 Silent p.F99F 0.35 TCGA-EE-A2M5-06 13 114152835 114152835 C T TMCO3 Missense_Mutation p.S208L 0.25 tolerated(0.3) benign(0.006) TCGA-EE-A2M5-06 13 21331756 21331756 C G N6AMT2 Intron 0.16 TCGA-EE-A2M5-06 13 21382648 21382648 C T XPO4 Silent p.P522P 0.33 TCGA-EE-A2M5-06 13 23910790 23910790 G A SACS Nonsense_Mutation p.Q2409* 0.28 TCGA-EE-A2M5-06 13 25355979 25355979 C T RNF17 Intron 0.33 TCGA-EE-A2M5-06 13 25671146 25671146 G A PABPC3 Silent p.V270V 0.18 TCGA-EE-A2M5-06 13 26138107 26138107 C T ATP8A2 Missense_Mutation p.P471S 0.18 tolerated(1) benign(0.001) TCGA-EE-A2M5-06 13 27255399 27255399 C T WASF3 Missense_Mutation p.P309S 0.31 tolerated(0.07) possibly_damaging(0.873) TCGA-EE-A2M5-06 13 27828363 27828363 T C RPL21 Missense_Mutation p.V25A 0.37 tolerated(0.09) benign(0.335) TCGA-EE-A2M5-06 13 28626773 28626773 T A FLT3 Nonsense_Mutation p.K175* 0.26 TCGA-EE-A2M5-06 13 29002051 29002051 C T FLT1 Missense_Mutation p.D372N 0.22 tolerated(0.08) benign(0.248) TCGA-EE-A2M5-06 13 29599898 29599898 G A MTUS2 Missense_Mutation p.E365K 0.14 tolerated(0.44) benign(0.367) TCGA-EE-A2M5-06 13 32349493 32349493 G A RXFP2 Missense_Mutation p.G203E 0.18 deleterious(0.01) benign(0.271) TCGA-EE-A2M5-06 13 32836501 32836501 C T FRY Silent p.T2556T 0.37 TCGA-EE-A2M5-06 13 33635816 33635816 C T KL Missense_Mutation p.P867L 0.28 deleterious(0.01) possibly_damaging(0.517) TCGA-EE-A2M5-06 13 36049657 36049657 C T MAB21L1 Missense_Mutation p.G207S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 13 36220044 36220044 C T NBEA Intron 0.47 TCGA-EE-A2M5-06 13 36382424 36382424 C T DCLK1 Silent p.Q600Q 0.24 TCGA-EE-A2M5-06 13 37453792 37453792 G A SMAD9 Missense_Mutation p.S12F 0.26 tolerated(0.09) benign(0.078) TCGA-EE-A2M5-06 13 39453102 39453102 A G FREM2 Silent p.T2998T 0.16 TCGA-EE-A2M5-06 13 39602369 39602369 C A PROSER1 Nonsense_Mutation p.E122* 0.29 TCGA-EE-A2M5-06 13 39952608 39952608 T C LHFP Silent p.E147E 0.32 TCGA-EE-A2M5-06 13 41797443 41797443 G A MTRF1 Silent p.T391T 0.21 TCGA-EE-A2M5-06 13 51417397 51417397 G A DLEU7 Missense_Mutation p.S129L 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 13 60566234 60566234 G A DIAPH3 Silent p.S404S 0.27 TCGA-EE-A2M5-06 13 61084023 61084040 CAGAAACCTGTTATGGGT - TDRD3 In_Frame_Del p.Q329_G334del 0.15 TCGA-EE-A2M5-06 13 64321127 64321127 G A AL445989.1 Missense_Mutation p.G65E 0.42 unknown(0) TCGA-EE-A2M5-06 13 67800351 67800351 G A PCDH9 Missense_Mutation p.P741L 0.37 tolerated(1) benign(0.017) TCGA-EE-A2M5-06 13 74420039 74420039 C T KLF12 Missense_Mutation p.A199T 0.22 tolerated(1) benign(0.194) TCGA-EE-A2M5-06 13 78183252 78183252 G A SCEL Missense_Mutation p.G426E 0.30 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A2M5-06 13 78218450 78218450 G A SCEL 3'UTR 0.31 TCGA-EE-A2M5-06 13 94938645 94938645 A G GPC6 Missense_Mutation p.N307S 0.21 tolerated(0.25) probably_damaging(0.91) TCGA-EE-A2M5-06 13 97484744 97484744 G A HS6ST3 Silent p.R236R 0.21 TCGA-EE-A2M5-06 13 98673250 98673250 C T IPO5 Missense_Mutation p.H1042Y 0.41 deleterious(0) possibly_damaging(0.738) TCGA-EE-A2M5-06 13 99112639 99112639 G A STK24 Missense_Mutation p.P382L 0.29 deleterious_low_confidence(0) benign(0.325) TCGA-EE-A2M5-06 14 100182258 100182258 G A CYP46A1 Missense_Mutation p.E269K 0.29 tolerated(0.19) benign(0.026) TCGA-EE-A2M5-06 14 100187630 100187630 G A CYP46A1 Silent p.E345E 0.28 TCGA-EE-A2M5-06 14 101349378 101349378 C T RTL1 Missense_Mutation p.G583E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 14 101404591 101404591 C T SNORD113-5 RNA 0.34 TCGA-EE-A2M5-06 14 101528447 101528447 T A MIR377 RNA 0.28 TCGA-EE-A2M5-06 14 102552569 102552569 A T HSP90AA1 Silent p.I171I 0.22 TCGA-EE-A2M5-06 14 102901338 102901338 C T TECPR2 Silent p.V728V 0.33 TCGA-EE-A2M5-06 14 104208499 104208499 C T PPP1R13B Missense_Mutation p.E484K 0.25 tolerated(0.23) benign(0.06) TCGA-EE-A2M5-06 14 105353067 105353067 C T CEP170B Missense_Mutation p.P831S 0.22 tolerated(0.29) benign(0.031) TCGA-EE-A2M5-06 14 105410925 105410925 C A AHNAK2 Missense_Mutation p.E3621D 0.59 benign(0.388) TCGA-EE-A2M5-06 14 105411838 105411838 G A AHNAK2 Missense_Mutation p.S3317L 0.63 benign(0.02) TCGA-EE-A2M5-06 14 105414017 105414017 G A AHNAK2 Missense_Mutation p.P2591S 0.27 possibly_damaging(0.756) TCGA-EE-A2M5-06 14 105609069 105609069 C T JAG2 Missense_Mutation p.R1227K 0.77 tolerated(0.61) benign(0.002) TCGA-EE-A2M5-06 14 106321919 106321919 C T IGHM Silent p.V105V 0.73 TCGA-EE-A2M5-06 14 106452778 106452778 T A IGHV1-2 Nonsense_Mutation p.K82* 0.62 TCGA-EE-A2M5-06 14 106518702 106518702 C A IGHV3-7 Missense_Mutation p.V17F 0.34 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2M5-06 14 107034826 107034826 C A IGHV5-51 Missense_Mutation p.G85V 0.69 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 14 107095291 107095291 C T IGHV4-61 Silent p.G63G 0.24 TCGA-EE-A2M5-06 14 19378404 19378404 A C OR11H12 Missense_Mutation p.M271L 0.21 tolerated(0.15) benign(0.101) TCGA-EE-A2M5-06 14 20388938 20388938 C T OR4K5 Missense_Mutation p.P58L 0.28 deleterious(0) benign(0.12) TCGA-EE-A2M5-06 14 20612398 20612398 C T OR4N5 Silent p.F168F 0.32 TCGA-EE-A2M5-06 14 20711004 20711004 C T OR11H4 Silent p.I18I 0.31 TCGA-EE-A2M5-06 14 20846375 20846375 G A TEP1 Silent p.A1843A 0.36 TCGA-EE-A2M5-06 14 20846376 20846376 G A TEP1 Missense_Mutation p.A1843V 0.36 tolerated(0.1) benign(0.007) TCGA-EE-A2M5-06 14 21058713 21058713 T A RNASE12 Missense_Mutation p.E57V 0.39 tolerated(0.16) benign(0.41) TCGA-EE-A2M5-06 14 21502418 21502418 G A RNASE13 Silent p.F10F 0.39 TCGA-EE-A2M5-06 14 21679493 21679493 G A HNRNPC Intron 0.35 TCGA-EE-A2M5-06 14 21793014 21793014 C T RPGRIP1 Missense_Mutation p.P667L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 14 22102951 22102951 G A OR10G2 Silent p.F16F 0.29 TCGA-EE-A2M5-06 14 22102966 22102966 G A OR10G2 Silent p.A11A 0.32 TCGA-EE-A2M5-06 14 22471471 22471471 G A TRAV18 Missense_Mutation p.G8R 0.34 tolerated(0.14) benign(0.019) TCGA-EE-A2M5-06 14 22564765 22564765 T C TRDV1 Silent p.G72G 0.28 TCGA-EE-A2M5-06 14 22616474 22616474 A C TRAV27 Missense_Mutation p.E72A 0.16 deleterious(0.01) possibly_damaging(0.81) TCGA-EE-A2M5-06 14 23346497 23346497 C T LRP10 Missense_Mutation p.P635S 0.21 tolerated(0.52) benign(0.001) TCGA-EE-A2M5-06 14 23417112 23417112 A G HAUS4 Silent p.L225L 0.35 TCGA-EE-A2M5-06 14 23549735 23549735 G A ACIN1 Missense_Mutation p.S328F 0.28 benign(0.002) TCGA-EE-A2M5-06 14 23848025 23848025 G A CMTM5 Intron 0.32 TCGA-EE-A2M5-06 14 24621198 24621198 C T RNF31 Silent p.N709N 0.32 TCGA-EE-A2M5-06 14 24621199 24621199 C T RNF31 Missense_Mutation p.R710W 0.33 deleterious(0) possibly_damaging(0.582) TCGA-EE-A2M5-06 14 24729894 24729894 G A TGM1 Silent p.P173P 0.43 TCGA-EE-A2M5-06 14 24769719 24769719 C T NOP9 Missense_Mutation p.P118L 0.33 deleterious(0) benign(0.109) TCGA-EE-A2M5-06 14 24791887 24791887 C T ADCY4 Silent p.L790L 0.33 TCGA-EE-A2M5-06 14 24808666 24808666 T C RIPK3 Missense_Mutation p.N53S 0.34 tolerated(0.27) possibly_damaging(0.562) TCGA-EE-A2M5-06 14 24877642 24877642 G A NYNRIN Missense_Mutation p.E256K 0.29 deleterious_low_confidence(0) benign(0.341) TCGA-EE-A2M5-06 14 31142536 31142536 C T SCFD1 Nonsense_Mutation p.R357* 0.32 TCGA-EE-A2M5-06 14 31570518 31570518 C T HECTD1 Silent p.L2521L 0.32 TCGA-EE-A2M5-06 14 32561408 32561408 T C ARHGAP5 Silent p.S511S 0.29 TCGA-EE-A2M5-06 14 32902696 32902696 C T AKAP6 5'UTR 0.31 TCGA-EE-A2M5-06 14 33015221 33015221 G A AKAP6 Silent p.Q454Q 0.27 TCGA-EE-A2M5-06 14 33015222 33015222 T A AKAP6 Missense_Mutation p.S455T 0.27 deleterious(0) probably_damaging(0.985) TCGA-EE-A2M5-06 14 36017714 36017714 C T RALGAPA1 Intron 0.22 TCGA-EE-A2M5-06 14 36154224 36154224 G A RALGAPA1 Missense_Mutation p.P896L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 14 39508292 39508292 G A SEC23A Silent p.F717F 0.29 TCGA-EE-A2M5-06 14 44974939 44974939 C T FSCB Missense_Mutation p.E418K 0.41 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A2M5-06 14 44975513 44975513 G A FSCB Silent p.P226P 0.39 TCGA-EE-A2M5-06 14 45618195 45618195 C T FANCM Silent p.I305I 0.29 TCGA-EE-A2M5-06 14 50901138 50901138 G C MAP4K5 Missense_Mutation p.S713C 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2M5-06 14 51132153 51132153 T C SAV1 Silent p.L93L 0.39 TCGA-EE-A2M5-06 14 52520456 52520456 G A NID2 Missense_Mutation p.P424S 0.32 tolerated(0.35) benign(0.002) TCGA-EE-A2M5-06 14 58938959 58938959 C T KIAA0586 Missense_Mutation p.P919S 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2M5-06 14 63174358 63174358 T A KCNH5 Missense_Mutation p.K945N 0.24 deleterious_low_confidence(0.03) benign(0.115) TCGA-EE-A2M5-06 14 63416913 63416913 C T KCNH5 Missense_Mutation p.G436E 0.32 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.32 TCGA-EE-A2M5-06 14 64453314 64453314 C T SYNE2 Silent p.T764T 0.26 TCGA-EE-A2M5-06 14 64476794 64476794 C T SYNE2 Missense_Mutation p.S1563L 0.31 benign(0.093) TCGA-EE-A2M5-06 14 65239642 65239642 G A SPTB Missense_Mutation p.R1737W 0.33 deleterious(0) probably_damaging(0.982) TCGA-EE-A2M5-06 14 65262154 65262154 C T SPTB Silent p.E515E 0.27 TCGA-EE-A2M5-06 14 67664924 67664924 G A FAM71D Missense_Mutation p.D16N 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.529) TCGA-EE-A2M5-06 14 70527656 70527656 C T SLC8A3 Silent p.V595V 0.24 TCGA-EE-A2M5-06 14 70634643 70634643 C T SLC8A3 Missense_Mutation p.G166E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 14 72921280 72921280 G A RGS6 Missense_Mutation p.D77N 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 14 72941367 72941367 G A RGS6 Missense_Mutation p.R218Q 0.34 deleterious(0.05) benign(0.011) TCGA-EE-A2M5-06 14 74125602 74125602 C T DNAL1 Missense_Mutation p.A32V 0.25 tolerated(0.5) benign(0.098) TCGA-EE-A2M5-06 14 74179835 74179835 G A PNMA1 Missense_Mutation p.P170S 0.28 tolerated(0.06) possibly_damaging(0.841) TCGA-EE-A2M5-06 14 74825492 74825492 C T VRTN Missense_Mutation p.P669L 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 14 75078154 75078154 C T LTBP2 Missense_Mutation p.G165E 0.32 deleterious(0) possibly_damaging(0.829) TCGA-EE-A2M5-06 14 75179797 75179797 G A AC007956.1 Missense_Mutation p.L2F 0.23 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-EE-A2M5-06 14 75483880 75483880 G A MLH3 Missense_Mutation p.R1423C 0.25 tolerated(0.09) benign(0.082) TCGA-EE-A2M5-06 14 77297647 77297647 G A C14orf166B Missense_Mutation p.E107K 0.34 tolerated(0.34) benign(0.04) TCGA-EE-A2M5-06 14 77709291 77709291 C T TMEM63C Silent p.I411I 0.27 TCGA-EE-A2M5-06 14 79181348 79181348 C T NRXN3 Missense_Mutation p.S264F 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2M5-06 14 80963765 80963765 T G CEP128 3'UTR 0.22 TCGA-EE-A2M5-06 14 80993326 80993326 C T CEP128 Missense_Mutation p.D987N 0.35 tolerated(0.06) benign(0.01) TCGA-EE-A2M5-06 14 88693765 88693765 C T KCNK10 Missense_Mutation p.G212E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 14 89629013 89629013 C T FOXN3 Silent p.K406K 0.42 TCGA-EE-A2M5-06 14 91338611 91338611 G A RPS6KA5 Missense_Mutation p.P739L 0.26 deleterious(0.01) possibly_damaging(0.858) TCGA-EE-A2M5-06 14 91739898 91739898 C T CCDC88C Missense_Mutation p.E1720K 0.23 tolerated(0.22) benign(0.371) TCGA-EE-A2M5-06 14 91744466 91744466 C T CCDC88C Missense_Mutation p.A1620T 0.33 tolerated(0.39) benign(0.005) TCGA-EE-A2M5-06 14 92347661 92347661 C T FBLN5 Missense_Mutation p.E322K 0.40 deleterious(0.04) benign(0.039) TCGA-EE-A2M5-06 14 92922848 92922848 C T SLC24A4 Missense_Mutation p.P384L 0.33 tolerated(0.4) benign(0.001) TCGA-EE-A2M5-06 14 92953125 92953125 G A SLC24A4 Splice_Site p.X513_splice 0.24 TCGA-EE-A2M5-06 14 94044293 94044293 C T UNC79 Missense_Mutation p.R596C 0.29 deleterious(0.02) possibly_damaging(0.685) TCGA-EE-A2M5-06 14 94063706 94063706 G A UNC79 Silent p.V887V 0.25 TCGA-EE-A2M5-06 14 94083641 94083641 C T UNC79 Silent p.I1228I 0.32 TCGA-EE-A2M5-06 14 94391701 94391701 G A FAM181A Silent p.A28A 0.32 TCGA-EE-A2M5-06 14 94700975 94700975 C T PPP4R4 Missense_Mutation p.R234W 0.30 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2M5-06 14 94914509 94914509 C T SERPINA11 Silent p.Q201Q 0.29 TCGA-EE-A2M5-06 14 94930969 94930969 G A SERPINA9 Intron 0.37 TCGA-EE-A2M5-06 14 94962913 94962913 A G SERPINA12 Silent p.S234S 0.33 TCGA-EE-A2M5-06 14 95670239 95670239 C T CLMN Missense_Mutation p.E483K 0.34 deleterious_low_confidence(0.03) benign(0.055) TCGA-EE-A2M5-06 14 96798681 96798681 G T ATG2B Missense_Mutation p.P477T 0.31 tolerated(0.1) benign(0.01) TCGA-EE-A2M5-06 14 96871137 96871137 A G AK7 Missense_Mutation p.D113G 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2M5-06 14 99182645 99182645 G A C14orf177 Silent p.G39G 0.49 TCGA-EE-A2M5-06 14 99641885 99641885 C T BCL11B Missense_Mutation p.E430K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 15 102291902 102291902 C T DNM1P47 RNA 0.47 TCGA-EE-A2M5-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.06 deleterious(0.01) benign(0.037) TCGA-EE-A2M5-06 15 22369509 22369509 G A OR4M2 Missense_Mutation p.E312K 0.17 tolerated(0.73) benign(0.002) TCGA-EE-A2M5-06 15 24921504 24921504 G A NPAP1 Missense_Mutation p.E164K 0.17 deleterious(0.03) possibly_damaging(0.74) TCGA-EE-A2M5-06 15 24921999 24921999 A T NPAP1 Nonsense_Mutation p.K329* 0.16 TCGA-EE-A2M5-06 15 25442661 25442661 G T SNORD115-14 3'Flank 0.14 TCGA-EE-A2M5-06 15 25442727 25442727 C T SNORD115-15 RNA 0.36 TCGA-EE-A2M5-06 15 26026330 26026330 G A ATP10A Missense_Mutation p.H164Y 0.46 tolerated(0.05) possibly_damaging(0.53) TCGA-EE-A2M5-06 15 26806324 26806324 C T GABRB3 Splice_Site p.X279_splice 0.35 TCGA-EE-A2M5-06 15 26866567 26866567 G A GABRB3 Missense_Mutation p.P119S 0.19 deleterious(0.04) probably_damaging(1) TCGA-EE-A2M5-06 15 27193409 27193409 C T GABRA5 3'UTR 0.40 TCGA-EE-A2M5-06 15 30025367 30025367 G A TJP1 Missense_Mutation p.S556F 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2M5-06 15 33261033 33261033 G A FMN1 Missense_Mutation p.P734S 0.18 tolerated_low_confidence(0.24) unknown(0) TCGA-EE-A2M5-06 15 33261035 33261035 G T FMN1 Missense_Mutation p.P733H 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A2M5-06 15 33938583 33938583 C T RYR3 Missense_Mutation p.P1266L 0.39 benign(0.036) TCGA-EE-A2M5-06 15 33941312 33941312 C T RYR3 Missense_Mutation p.P1340S 0.32 probably_damaging(1) TCGA-EE-A2M5-06 15 34150115 34150115 G A RYR3 Silent p.T4714T 0.45 TCGA-EE-A2M5-06 15 34528243 34528243 C T SLC12A6 Missense_Mutation p.G1067E 0.17 deleterious(0.03) benign(0.103) TCGA-EE-A2M5-06 15 35046624 35046624 G A GJD2 Silent p.I22I 0.33 TCGA-EE-A2M5-06 15 35166930 35166930 G A AQR Missense_Mutation p.R1125C 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 15 37242593 37242593 G A MEIS2 Silent p.Y303Y 0.26 TCGA-EE-A2M5-06 15 38243296 38243296 T G TMCO5A Missense_Mutation p.F243C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-EE-A2M5-06 15 39874629 39874629 G A THBS1 Silent p.R101R 0.42 TCGA-EE-A2M5-06 15 40005724 40005724 C T FSIP1 Missense_Mutation p.R370K 0.32 deleterious(0.01) possibly_damaging(0.742) TCGA-EE-A2M5-06 15 40675131 40675131 G A KNSTRN Missense_Mutation p.R32Q 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2M5-06 15 40913706 40913706 C T CASC5 Missense_Mutation p.S441F 0.15 deleterious(0.05) probably_damaging(0.987) TCGA-EE-A2M5-06 15 40954427 40954427 T C CASC5 3'UTR 0.41 TCGA-EE-A2M5-06 15 41819424 41819424 G A RPAP1 Missense_Mutation p.L563F 0.15 deleterious(0.02) possibly_damaging(0.702) TCGA-EE-A2M5-06 15 41859680 41859680 T G TYRO3 Missense_Mutation p.N302K 0.22 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A2M5-06 15 42245963 42245963 G A EHD4 Nonsense_Mutation p.R138* 0.32 TCGA-EE-A2M5-06 15 42364075 42364075 G A PLA2G4D Silent p.F490F 0.32 TCGA-EE-A2M5-06 15 42438008 42438008 C T PLA2G4F Missense_Mutation p.R543Q 0.24 deleterious(0.04) benign(0.087) TCGA-EE-A2M5-06 15 42743513 42743513 A C ZNF106 Silent p.G296G 0.08 TCGA-EE-A2M5-06 15 43045325 43045325 G A TTBK2 Missense_Mutation p.P707S 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2M5-06 15 43318759 43318759 C T UBR1 Silent p.K845K 0.13 TCGA-EE-A2M5-06 15 43653936 43653936 C T ZSCAN29 Missense_Mutation p.E632K 0.34 tolerated(0.07) benign(0.101) TCGA-EE-A2M5-06 15 43815394 43815394 G A MAP1A Missense_Mutation p.G575R 0.26 benign(0.009) TCGA-EE-A2M5-06 15 43819762 43819762 C T MAP1A Missense_Mutation p.P2031S 0.11 benign(0.014) TCGA-EE-A2M5-06 15 44673061 44673061 C T CASC4 Missense_Mutation p.P320L 0.26 tolerated(0.1) benign(0.005) TCGA-EE-A2M5-06 15 44864901 44864901 G A SPG11 Missense_Mutation p.P2108L 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A2M5-06 15 45426452 45426452 G A DUOX1 Silent p.R84R 0.15 TCGA-EE-A2M5-06 15 48741067 48741067 G C FBN1 Missense_Mutation p.P1857A 0.22 possibly_damaging(0.832) TCGA-EE-A2M5-06 15 49447856 49447856 C T COPS2 5'UTR 0.40 TCGA-EE-A2M5-06 15 50264849 50264849 G A ATP8B4 Silent p.S391S 0.32 TCGA-EE-A2M5-06 15 50911985 50911985 G T TRPM7 Missense_Mutation p.P484Q 0.29 tolerated(0.14) possibly_damaging(0.889) TCGA-EE-A2M5-06 15 51504559 51504559 G A CYP19A1 Silent p.F407F 0.22 TCGA-EE-A2M5-06 15 51984448 51984448 G A SCG3 Silent p.R261R 0.33 TCGA-EE-A2M5-06 15 52905952 52905952 C T FAM214A Missense_Mutation p.R40Q 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2M5-06 15 59180636 59180636 C T SLTM Missense_Mutation p.E775K 0.50 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A2M5-06 15 59387141 59387141 C T RNF111 3'UTR 0.30 TCGA-EE-A2M5-06 15 59910957 59910957 G A GCNT3 Missense_Mutation p.E174K 0.37 tolerated(0.7) benign(0.026) TCGA-EE-A2M5-06 15 59911232 59911232 G A GCNT3 Nonsense_Mutation p.W265* 0.31 TCGA-EE-A2M5-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.25 tolerated(0.08) probably_damaging(0.913) TCGA-EE-A2M5-06 15 66845568 66845568 C T LCTL Silent p.E317E 0.17 TCGA-EE-A2M5-06 15 70342442 70342442 G A TLE3 Silent p.I771I 0.38 TCGA-EE-A2M5-06 15 72118845 72118845 G A MYO9A 3'UTR 0.42 TCGA-EE-A2M5-06 15 73029894 73029894 C T BBS4 Missense_Mutation p.P509L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-EE-A2M5-06 15 73528761 73528761 C T NEO1 Silent p.I455I 0.12 TCGA-EE-A2M5-06 15 74472295 74472295 G A STRA6 3'Flank 0.31 TCGA-EE-A2M5-06 15 75042853 75042853 G A CYP1A2 Silent p.Q258Q 0.37 TCGA-EE-A2M5-06 15 75045535 75045535 G A CYP1A2 Missense_Mutation p.D393N 0.36 tolerated(0.07) benign(0.025) TCGA-EE-A2M5-06 15 75105175 75105175 C T LMAN1L 5'UTR 0.34 TCGA-EE-A2M5-06 15 75309020 75309020 T A SCAMP5 Missense_Mutation p.F75I 0.40 tolerated(1) benign(0.002) TCGA-EE-A2M5-06 15 76430138 76430138 G A C15orf27 Silent p.V43V 0.39 TCGA-EE-A2M5-06 15 77425472 77425472 G A PEAK1 Missense_Mutation p.R1318C 0.40 deleterious(0) probably_damaging(0.961) TCGA-EE-A2M5-06 15 78295821 78295821 C T TBC1D2B Silent p.R800R 0.39 TCGA-EE-A2M5-06 15 78807359 78807359 C T HYKK Silent p.L129L 0.33 TCGA-EE-A2M5-06 15 78807360 78807360 C T HYKK Missense_Mutation p.P130S 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 15 78923522 78923522 C T CHRNB4 Nonsense_Mutation p.W85* 0.24 TCGA-EE-A2M5-06 15 79290502 79290502 C T RASGRF1 Missense_Mutation p.E984K 0.21 tolerated(0.05) benign(0.267) TCGA-EE-A2M5-06 15 83334278 83334278 C T AP3B2 Silent p.K634K 0.18 TCGA-EE-A2M5-06 15 84561589 84561589 A G ADAMTSL3 Silent p.Q472Q 0.33 TCGA-EE-A2M5-06 15 84561591 84561591 C G ADAMTSL3 Missense_Mutation p.T473S 0.38 tolerated(0.07) possibly_damaging(0.816) TCGA-EE-A2M5-06 15 84651759 84651759 G A ADAMTSL3 Missense_Mutation p.E1127K 0.31 deleterious(0.01) possibly_damaging(0.777) TCGA-EE-A2M5-06 15 86278326 86278326 C T AKAP13 Silent p.P2466P 0.32 TCGA-EE-A2M5-06 15 86278327 86278327 C T AKAP13 Missense_Mutation p.R2467W 0.32 deleterious(0) probably_damaging(0.982) TCGA-EE-A2M5-06 15 89382250 89382250 G A ACAN Missense_Mutation p.E143K 0.35 tolerated(0.21) unknown(0) TCGA-EE-A2M5-06 15 89398540 89398540 G A ACAN Silent p.V908V 0.34 TCGA-EE-A2M5-06 15 89400745 89400745 C T ACAN Silent p.P1643P 0.25 TCGA-EE-A2M5-06 15 90280894 90280894 C T WDR93 Missense_Mutation p.P567S 0.08 tolerated(0.61) benign(0.012) TCGA-EE-A2M5-06 15 90348431 90348431 G A ANPEP Missense_Mutation p.P259S 0.12 tolerated(0.73) benign(0.014) TCGA-EE-A2M5-06 15 90771900 90771900 C T SEMA4B 3'UTR 0.25 TCGA-EE-A2M5-06 15 91181686 91181686 C A CRTC3 Silent p.S425S 0.37 TCGA-EE-A2M5-06 15 93043629 93043629 G A C15orf32 Silent p.%3D 0.12 TCGA-EE-A2M5-06 15 94899259 94899259 G A MCTP2 Intron 0.27 TCGA-EE-A2M5-06 15 94910937 94910937 C T MCTP2 Missense_Mutation p.P469S 0.17 tolerated(0.13) benign(0.119) TCGA-EE-A2M5-06 16 11272417 11272417 C T CLEC16A Missense_Mutation p.P1011L 0.33 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-EE-A2M5-06 16 12371844 12371844 G A SNX29 Missense_Mutation p.G578E 0.46 tolerated(1) benign(0.015) TCGA-EE-A2M5-06 16 1400074 1400074 G A TSR3 Nonsense_Mutation p.Q230* 0.50 TCGA-EE-A2M5-06 16 1400075 1400075 G A TSR3 Silent p.P229P 0.44 TCGA-EE-A2M5-06 16 14980679 14980679 C T NOMO1 Missense_Mutation p.S1095F 0.15 deleterious(0) probably_damaging(0.969) TCGA-EE-A2M5-06 16 15224540 15224540 G A RP11-1186N24.5 RNA 0.26 TCGA-EE-A2M5-06 16 16230362 16230362 C T ABCC1 Nonsense_Mutation p.R1385* 0.29 TCGA-EE-A2M5-06 16 16259567 16259567 G A ABCC6 Silent p.L1073L 0.35 TCGA-EE-A2M5-06 16 16278880 16278880 C T ABCC6 Missense_Mutation p.D627N 0.23 tolerated(0.7) benign(0.001) TCGA-EE-A2M5-06 16 1859771 1859771 G A HAGH Missense_Mutation p.P271S 0.20 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M5-06 16 19505676 19505676 G A TMC5 Silent p.R973R 0.26 TCGA-EE-A2M5-06 16 19539302 19539302 C T CCP110 Silent p.I33I 0.19 TCGA-EE-A2M5-06 16 20335310 20335310 C T GP2 Silent p.L121L 0.25 TCGA-EE-A2M5-06 16 20335546 20335546 C T GP2 Missense_Mutation p.G43R 0.37 tolerated(0.1) benign(0.111) TCGA-EE-A2M5-06 16 20384443 20384443 C T PDILT Missense_Mutation p.G228E 0.34 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2M5-06 16 20486981 20486981 C T ACSM2A Silent p.F328F 0.26 TCGA-EE-A2M5-06 16 20491931 20491931 G A ACSM2A Missense_Mutation p.D440N 0.19 tolerated(0.35) benign(0.107) TCGA-EE-A2M5-06 16 20554548 20554548 C T ACSM2B Missense_Mutation p.D440N 0.18 tolerated(0.35) benign(0.42) TCGA-EE-A2M5-06 16 20994050 20994050 G A DNAH3 Missense_Mutation p.R2618W 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M5-06 16 21213473 21213473 C T ZP2 Silent p.G413G 0.18 TCGA-EE-A2M5-06 16 2160338 2160338 G A PKD1 Silent p.I1610I 0.31 TCGA-EE-A2M5-06 16 2260557 2260557 C T BRICD5 Missense_Mutation p.G49E 0.36 tolerated(0.21) probably_damaging(0.999) TCGA-EE-A2M5-06 16 23205548 23205548 G A SCNN1G Missense_Mutation p.R289K 0.24 tolerated(0.12) benign(0.002) TCGA-EE-A2M5-06 16 27503759 27503759 G A GTF3C1 Silent p.S1017S 0.21 TCGA-EE-A2M5-06 16 28331765 28331765 C T SBK1 Silent p.F266F 0.32 TCGA-EE-A2M5-06 16 28468171 28468171 G A NPIPB7 Silent p.P273P 0.57 TCGA-EE-A2M5-06 16 28509498 28509498 C T APOBR Missense_Mutation p.R1018C 0.50 deleterious(0) unknown(0) TCGA-EE-A2M5-06 16 2881991 2881991 C T ZG16B Missense_Mutation p.S153F 0.34 tolerated(1) benign(0) TCGA-EE-A2M5-06 16 29906686 29906686 G A SEZ6L2 Silent p.S249S 0.28 TCGA-EE-A2M5-06 16 29998918 29998918 C T TAOK2 Missense_Mutation p.R1109W 0.23 tolerated_low_confidence(0.05) probably_damaging(0.988) TCGA-EE-A2M5-06 16 30040847 30040847 G A FAM57B Intron 0.23 TCGA-EE-A2M5-06 16 30536501 30536501 G A ZNF768 Silent p.P320P 0.24 TCGA-EE-A2M5-06 16 3065695 3065695 C T CLDN6 Missense_Mutation p.E110K 0.24 deleterious(0.01) benign(0.008) TCGA-EE-A2M5-06 16 30712165 30712165 C T SRCAP Missense_Mutation p.P7L 0.39 unknown(0) TCGA-EE-A2M5-06 16 30779532 30779532 C T RNF40 Missense_Mutation p.P554S 0.26 tolerated(0.81) benign(0.001) TCGA-EE-A2M5-06 16 30779533 30779533 C T RNF40 Missense_Mutation p.P554L 0.26 tolerated(0.33) benign(0.005) TCGA-EE-A2M5-06 16 30795488 30795488 T G ZNF629 Missense_Mutation p.E54A 0.32 deleterious_low_confidence(0.03) benign(0.073) TCGA-EE-A2M5-06 16 31088499 31088499 C T ZNF646 Missense_Mutation p.S285F 0.19 deleterious(0) probably_damaging(0.929) TCGA-EE-A2M5-06 16 31391899 31391899 C T ITGAX Missense_Mutation p.S1077F 0.39 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2M5-06 16 3141590 3141590 C T ZSCAN10 Silent p.L191L 0.33 TCGA-EE-A2M5-06 16 31424472 31424472 C T ITGAD Missense_Mutation p.A634V 0.24 deleterious(0.03) benign(0.114) TCGA-EE-A2M5-06 16 31476283 31476283 G A ARMC5 Intron 0.26 TCGA-EE-A2M5-06 16 31503562 31503562 G A C16orf58 Missense_Mutation p.P396L 0.25 tolerated(0.48) benign(0.003) TCGA-EE-A2M5-06 16 3170014 3170014 C T ZNF205 Silent p.P451P 0.30 TCGA-EE-A2M5-06 16 3170236 3170236 C T ZNF205 Silent p.I525I 0.46 TCGA-EE-A2M5-06 16 3254528 3254528 C T OR1F1 Silent p.F94F 0.32 TCGA-EE-A2M5-06 16 3900527 3900527 T A CREBBP Missense_Mutation p.N190I 0.27 probably_damaging(0.961) TCGA-EE-A2M5-06 16 4042190 4042190 C T ADCY9 Missense_Mutation p.E722K 0.26 tolerated(0.47) possibly_damaging(0.77) TCGA-EE-A2M5-06 16 4934161 4934161 C T PPL Missense_Mutation p.V1499M 0.23 deleterious(0) probably_damaging(0.986) TCGA-EE-A2M5-06 16 4934162 4934162 C T PPL Silent p.K1498K 0.23 TCGA-EE-A2M5-06 16 49430357 49430357 G A C16orf78 Missense_Mutation p.D140N 0.33 deleterious(0.03) benign(0.001) TCGA-EE-A2M5-06 16 4944501 4944501 G A PPL Missense_Mutation p.P454L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 16 51174599 51174599 G T SALL1 Missense_Mutation p.P512T 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 16 55522468 55522468 G A MMP2 Missense_Mutation p.M282I 0.36 tolerated(0.42) benign(0.004) TCGA-EE-A2M5-06 16 56692623 56692623 A C MT1F Missense_Mutation p.K22T 0.33 tolerated(0.09) unknown(0) TCGA-EE-A2M5-06 16 56947321 56947321 C T SLC12A3 3'UTR 0.36 TCGA-EE-A2M5-06 16 57060774 57060774 C T NLRC5 Missense_Mutation p.P640L 0.24 tolerated(0.1) benign(0.003) TCGA-EE-A2M5-06 16 57269052 57269052 C T RSPRY1 Silent p.L516L 0.28 TCGA-EE-A2M5-06 16 57731954 57731954 G A CCDC135 Missense_Mutation p.M31I 0.39 tolerated_low_confidence(0.26) unknown(0) TCGA-EE-A2M5-06 16 58545466 58545466 G A NDRG4 Missense_Mutation p.E388K 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 16 58576357 58576357 G A CNOT1 Missense_Mutation p.P1517L 0.24 tolerated(0.13) benign(0.065) TCGA-EE-A2M5-06 16 58576358 58576358 G A CNOT1 Missense_Mutation p.P1517S 0.25 tolerated(0.05) benign(0.065) TCGA-EE-A2M5-06 16 58580365 58580365 T C CNOT1 Missense_Mutation p.N1289S 0.31 tolerated(0.27) benign(0.027) TCGA-EE-A2M5-06 16 624338 624338 C T PIGQ Silent p.F88F 0.27 TCGA-EE-A2M5-06 16 66976689 66976689 G A CES2 Splice_Site p.X538_splice 0.22 TCGA-EE-A2M5-06 16 67116155 67116155 C T CBFB Missense_Mutation p.R147W 0.27 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2M5-06 16 67692482 67692482 G T ACD Missense_Mutation p.P355T 0.25 tolerated(0.46) benign(0.186) TCGA-EE-A2M5-06 16 67765302 67765302 G A RANBP10 Intron 0.36 TCGA-EE-A2M5-06 16 67942834 67942834 C T PSKH1 Missense_Mutation p.P61L 0.22 tolerated_low_confidence(0.13) benign(0.039) TCGA-EE-A2M5-06 16 69333669 69333669 G A SNTB2 Missense_Mutation p.G508R 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 16 705375 705375 C T WDR90 Missense_Mutation p.P542L 0.21 deleterious(0) benign(0.162) TCGA-EE-A2M5-06 16 70698297 70698297 G A MTSS1L Silent p.P509P 0.43 TCGA-EE-A2M5-06 16 70929888 70929888 G A HYDIN Silent p.P3048P 0.31 TCGA-EE-A2M5-06 16 70972645 70972645 C T HYDIN Silent p.K2289K 0.25 TCGA-EE-A2M5-06 16 71196543 71196543 G A HYDIN Missense_Mutation p.P203S 0.31 probably_damaging(0.974) TCGA-EE-A2M5-06 16 71218768 71218768 C T HYDIN Silent p.K87K 0.23 TCGA-EE-A2M5-06 16 72827388 72827388 C T ZFHX3 Missense_Mutation p.E3065K 0.23 unknown(0) TCGA-EE-A2M5-06 16 72845856 72845856 G T ZFHX3 Missense_Mutation p.S1204Y 0.27 possibly_damaging(0.491) TCGA-EE-A2M5-06 16 74919580 74919580 G A WDR59 Missense_Mutation p.S887F 0.22 deleterious(0) probably_damaging(0.91) TCGA-EE-A2M5-06 16 7568204 7568204 C T RBFOX1 Missense_Mutation p.A48V 0.24 tolerated(0.07) possibly_damaging(0.755) TCGA-EE-A2M5-06 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.21 tolerated(1) benign(0.004) TCGA-EE-A2M5-06 16 80667066 80667066 C T CDYL2 Silent p.K228K 0.27 TCGA-EE-A2M5-06 16 81236305 81236305 G A PKD1L2 Missense_Mutation p.P315S 0.27 deleterious(0.04) possibly_damaging(0.69) TCGA-EE-A2M5-06 16 81320998 81320998 G A BCMO1 Silent p.K467K 0.29 TCGA-EE-A2M5-06 16 817004 817004 C T MSLN Missense_Mutation p.S506F 0.37 deleterious(0) possibly_damaging(0.811) TCGA-EE-A2M5-06 16 81960689 81960689 G A PLCG2 Nonsense_Mutation p.W807* 0.33 TCGA-EE-A2M5-06 16 83065752 83065752 C T CDH13 Missense_Mutation p.R146W 0.11 tolerated(0.24) possibly_damaging(0.799) TCGA-EE-A2M5-06 16 83816972 83816972 G A CDH13 Missense_Mutation p.V724I 0.30 tolerated(0.05) possibly_damaging(0.539) TCGA-EE-A2M5-06 16 83994339 83994339 C T OSGIN1 Missense_Mutation p.R124W 0.24 deleterious(0) probably_damaging(0.981) TCGA-EE-A2M5-06 16 84212935 84212935 G A TAF1C Missense_Mutation p.S741L 0.39 tolerated(0.33) benign(0.014) TCGA-EE-A2M5-06 16 85100875 85100875 G A KIAA0513 Nonsense_Mutation p.W66* 0.23 TCGA-EE-A2M5-06 16 86602381 86602381 C T FOXC2 Silent p.P480P 0.24 TCGA-EE-A2M5-06 16 86612503 86612503 C T FOXL1 Silent p.I58I 0.28 TCGA-EE-A2M5-06 16 8740037 8740037 C T METTL22 3'UTR 0.20 TCGA-EE-A2M5-06 16 87717835 87717835 C T JPH3 Silent p.A416A 0.27 TCGA-EE-A2M5-06 16 87866442 87866442 A G SLC7A5 3'UTR 0.24 TCGA-EE-A2M5-06 16 88105742 88105742 C T BANP Missense_Mutation p.S471L 0.50 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A2M5-06 16 89645382 89645382 A T CPNE7 Missense_Mutation p.T159S 0.13 tolerated(0.64) benign(0) TCGA-EE-A2M5-06 16 89965178 89965178 C T TCF25 Silent p.L373L 0.24 TCGA-EE-A2M5-06 16 90161995 90161995 G A TUBB8P7 RNA 0.35 TCGA-EE-A2M5-06 16 9858016 9858016 G A GRIN2A Missense_Mutation p.H1129Y 0.25 tolerated(0.81) possibly_damaging(0.58) TCGA-EE-A2M5-06 17 10304075 10304075 C T MYH8 Missense_Mutation p.E1123K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 10348625 10348625 G A MYH4 Nonsense_Mutation p.Q1742* 0.31 TCGA-EE-A2M5-06 17 10408783 10408783 G A MYH1 Silent p.I740I 0.19 TCGA-EE-A2M5-06 17 10433055 10433055 C T MYH2 Silent p.V981V 0.36 TCGA-EE-A2M5-06 17 10535964 10535964 C T MYH3 Silent p.V1595V 0.34 TCGA-EE-A2M5-06 17 11597666 11597666 G A DNAH9 Missense_Mutation p.E1592K 0.14 probably_damaging(0.927) TCGA-EE-A2M5-06 17 11738140 11738140 G A DNAH9 Silent p.K3144K 0.33 TCGA-EE-A2M5-06 17 11840836 11840836 A T DNAH9 Missense_Mutation p.E4219D 0.24 benign(0.248) TCGA-EE-A2M5-06 17 12859201 12859201 T C ARHGAP44 Missense_Mutation p.L385S 0.42 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2M5-06 17 14683245 14683245 C T AC005863.1 RNA 0.39 TCGA-EE-A2M5-06 17 15522746 15522746 C T CDRT1 Silent p.R27R 0.34 TCGA-EE-A2M5-06 17 15522747 15522747 C T CDRT1 Missense_Mutation p.R27Q 0.35 tolerated(1) benign(0.001) TCGA-EE-A2M5-06 17 15620080 15620080 C T ZNF286A Missense_Mutation p.H348Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M5-06 17 16097819 16097819 G A NCOR1 Missense_Mutation p.P22L 0.23 benign(0.031) TCGA-EE-A2M5-06 17 16722222 16722222 G A AC022596.6 RNA 0.40 TCGA-EE-A2M5-06 17 17398471 17398471 C T RASD1 Missense_Mutation p.A272T 0.20 tolerated(0.37) benign(0.002) TCGA-EE-A2M5-06 17 17700174 17700174 C T RAI1 Silent p.L1304L 0.20 TCGA-EE-A2M5-06 17 18196105 18196105 A G TOP3A Silent p.L379L 0.21 TCGA-EE-A2M5-06 17 18668146 18668146 G T FBXW10 Missense_Mutation p.V509L 0.32 tolerated(0.07) probably_damaging(0.924) TCGA-EE-A2M5-06 17 19284546 19284546 C T MAPK7 Missense_Mutation p.L342F 0.20 deleterious(0) unknown(0) TCGA-EE-A2M5-06 17 19451383 19451383 G A SLC47A1 Nonsense_Mutation p.W131* 0.26 TCGA-EE-A2M5-06 17 2186922 2186922 C T SMG6 Silent p.R815R 0.14 TCGA-EE-A2M5-06 17 2583502 2583502 G A PAFAH1B1 Silent p.G349G 0.20 TCGA-EE-A2M5-06 17 25974437 25974437 C T LGALS9 Silent p.F300F 0.43 TCGA-EE-A2M5-06 17 26686008 26686008 C T TMEM199 Missense_Mutation p.P94L 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 17 26965064 26965064 G A KIAA0100 Missense_Mutation p.L521F 0.49 tolerated(0.11) possibly_damaging(0.544) TCGA-EE-A2M5-06 17 27011718 27011718 C T SUPT6H Missense_Mutation p.L782F 0.23 tolerated(0.07) benign(0.178) TCGA-EE-A2M5-06 17 27902103 27902103 G A GIT1 Silent p.F698F 0.30 TCGA-EE-A2M5-06 17 28505103 28505103 C T NSRP1 Silent p.I62I 0.37 TCGA-EE-A2M5-06 17 29276332 29276332 C T ADAP2 Missense_Mutation p.R229C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 3030088 3030088 C T OR1G1 Missense_Mutation p.G253E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 3119115 3119115 C T OR1A1 Silent p.S67S 0.20 TCGA-EE-A2M5-06 17 3119786 3119786 G A OR1A1 Missense_Mutation p.R291K 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 17 3144062 3144062 C T OR1D4 RNA 0.09 TCGA-EE-A2M5-06 17 32687527 32687527 G A CCL1 3'UTR 0.22 TCGA-EE-A2M5-06 17 33807092 33807092 C T SLFN12L Missense_Mutation p.R46K 0.58 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2M5-06 17 34340867 34340867 G A CCL23 Silent p.I73I 0.31 TCGA-EE-A2M5-06 17 3458031 3458031 C T TRPV3 Silent p.K38K 0.35 TCGA-EE-A2M5-06 17 3495396 3495396 G A TRPV1 Silent p.T83T 0.20 TCGA-EE-A2M5-06 17 35557126 35557126 C T ACACA Missense_Mutation p.D1372N 0.33 tolerated(0.3) possibly_damaging(0.709) TCGA-EE-A2M5-06 17 35640208 35640208 G A ACACA Silent p.F190F 0.26 TCGA-EE-A2M5-06 17 35930926 35930926 G A SYNRG Missense_Mutation p.P386L 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 17 35981555 35981555 G A DDX52 Missense_Mutation p.P413L 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 36485943 36485943 C T GPR179 Missense_Mutation p.R1170Q 0.38 tolerated(1) benign(0) TCGA-EE-A2M5-06 17 36872948 36872948 T G MLLT6 Silent p.A455A 0.33 TCGA-EE-A2M5-06 17 36873770 36873770 C T MLLT6 Silent p.L579L 0.33 TCGA-EE-A2M5-06 17 37187776 37187776 C T CTD-2206N4.2 5'Flank 0.20 TCGA-EE-A2M5-06 17 37829086 37829086 C T PGAP3 Silent p.K311K 0.38 TCGA-EE-A2M5-06 17 37898943 37898943 C T GRB7 Missense_Mutation p.L117F 0.16 tolerated(0.69) possibly_damaging(0.675) TCGA-EE-A2M5-06 17 3851089 3851089 C T ATP2A3 Missense_Mutation p.E231K 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2M5-06 17 3851090 3851090 C T ATP2A3 Silent p.T230T 0.21 TCGA-EE-A2M5-06 17 39022967 39022967 G A KRT12 Nonsense_Mutation p.R158* 0.20 TCGA-EE-A2M5-06 17 39197225 39197225 G A KRTAP1-1 Missense_Mutation p.S142F 0.46 deleterious(0) benign(0.197) TCGA-EE-A2M5-06 17 39261852 39261852 A G KRTAP4-9 Missense_Mutation p.Q71R 0.17 tolerated(0.34) unknown(0) TCGA-EE-A2M5-06 17 39471572 39471572 G A KRTAP17-1 3'UTR 0.11 TCGA-EE-A2M5-06 17 39623313 39623313 C T KRT32 Missense_Mutation p.E89K 0.48 deleterious(0.02) benign(0.353) TCGA-EE-A2M5-06 17 39645717 39645717 G A KRT36 Missense_Mutation p.P134S 0.22 tolerated(0.12) possibly_damaging(0.906) TCGA-EE-A2M5-06 17 39646091 39646091 G A KRT36 Missense_Mutation p.T9I 0.28 tolerated(0.17) benign(0.001) TCGA-EE-A2M5-06 17 39672365 39672365 G A KRT15 Silent p.F297F 0.39 TCGA-EE-A2M5-06 17 40010862 40010862 A G KLHL11 Silent p.F419F 0.30 TCGA-EE-A2M5-06 17 40322266 40322266 C T KCNH4 Missense_Mutation p.V417M 0.29 tolerated(0.27) benign(0.058) TCGA-EE-A2M5-06 17 40322267 40322267 C T KCNH4 Silent p.S416S 0.29 TCGA-EE-A2M5-06 17 40475291 40475291 G A STAT3 Missense_Mutation p.L579F 0.46 deleterious(0.01) benign(0.108) TCGA-EE-A2M5-06 17 40620096 40620096 C T ATP6V0A1 Missense_Mutation p.P89S 0.31 deleterious(0) benign(0.107) TCGA-EE-A2M5-06 17 40733942 40733942 G T FAM134C Missense_Mutation p.F430L 0.26 tolerated(0.34) benign(0.001) TCGA-EE-A2M5-06 17 40837272 40837272 C A CNTNAP1 Silent p.I183I 0.28 TCGA-EE-A2M5-06 17 41004751 41004751 C T AOC3 Missense_Mutation p.S464F 0.46 deleterious(0.04) probably_damaging(1) TCGA-EE-A2M5-06 17 41063459 41063459 C T G6PC 3'UTR 0.22 TCGA-EE-A2M5-06 17 41343547 41343547 C T NBR1 Missense_Mutation p.P341L 0.41 tolerated(0.12) benign(0.086) TCGA-EE-A2M5-06 17 41343548 41343548 C T NBR1 Silent p.P341P 0.44 TCGA-EE-A2M5-06 17 41584372 41584372 C T DHX8 Missense_Mutation p.A577V 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 17 41891596 41891596 G T MPP3 Silent p.P381P 0.29 TCGA-EE-A2M5-06 17 42330504 42330504 G T SLC4A1 Missense_Mutation p.L765M 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2M5-06 17 43333199 43333199 C T SPATA32 Missense_Mutation p.G117E 0.34 tolerated(1) benign(0.001) TCGA-EE-A2M5-06 17 43531545 43531545 G A PLEKHM1 Missense_Mutation p.S558F 0.40 deleterious(0) probably_damaging(0.969) TCGA-EE-A2M5-06 17 43535769 43535769 G A PLEKHM1 Missense_Mutation p.R449W 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 17 43535770 43535770 G A PLEKHM1 Silent p.Y448Y 0.18 TCGA-EE-A2M5-06 17 4446300 4446302 AGA GT MYBBP1A Frame_Shift_Del p.V933Dfs*2 0.13 TCGA-EE-A2M5-06 17 44626153 44626153 G A LRRC37A2 Silent p.Q1216Q 0.16 TCGA-EE-A2M5-06 17 46136643 46136643 C T NFE2L1 Silent p.S653S 0.39 TCGA-EE-A2M5-06 17 46136644 46136644 C T NFE2L1 Missense_Mutation p.L654F 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 46606983 46606983 C T HOXB1 Missense_Mutation p.E278K 0.19 deleterious(0.04) benign(0.185) TCGA-EE-A2M5-06 17 46628315 46628315 T C HOXB3 Missense_Mutation p.N226S 0.24 tolerated(0.1) benign(0.262) TCGA-EE-A2M5-06 17 46805802 46805802 C T HOXB13 Missense_Mutation p.D52N 0.27 tolerated(0.12) possibly_damaging(0.653) TCGA-EE-A2M5-06 17 4722407 4722407 C T PLD2 Silent p.S734S 0.23 TCGA-EE-A2M5-06 17 4805804 4805804 T C C17orf107 3'UTR 0.39 TCGA-EE-A2M5-06 17 48267439 48267439 C T COL1A1 Missense_Mutation p.E828K 0.25 unknown(0) TCGA-EE-A2M5-06 17 48458281 48458281 C T EME1 Missense_Mutation p.S578F 0.30 tolerated(0.55) possibly_damaging(0.673) TCGA-EE-A2M5-06 17 4937287 4937287 C T SLC52A1 Missense_Mutation p.G166D 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 54535305 54535305 C T ANKFN1 Missense_Mutation p.R511W 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 17 55027768 55027768 A G COIL Silent p.L279L 0.36 TCGA-EE-A2M5-06 17 56247444 56247444 G A OR4D2 Missense_Mutation p.G143E 0.16 tolerated(0.11) possibly_damaging(0.809) TCGA-EE-A2M5-06 17 56621404 56621404 A C C17orf47 Silent p.P48P 0.26 TCGA-EE-A2M5-06 17 57181659 57181659 T A TRIM37 Missense_Mutation p.I40F 0.21 deleterious(0.02) possibly_damaging(0.892) TCGA-EE-A2M5-06 17 57262831 57262831 C T PRR11 Missense_Mutation p.P104S 0.21 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A2M5-06 17 57725728 57725728 T C CLTC Missense_Mutation p.F216S 0.36 deleterious(0) probably_damaging(0.97) TCGA-EE-A2M5-06 17 57774890 57774890 C T PTRH2 Silent p.Q150Q 0.26 TCGA-EE-A2M5-06 17 58529386 58529386 G A APPBP2 Silent p.I453I 0.18 TCGA-EE-A2M5-06 17 59857760 59857760 G A BRIP1 Silent p.A599A 0.39 TCGA-EE-A2M5-06 17 60469323 60469323 G A EFCAB3 Missense_Mutation p.D150N 0.24 deleterious(0.02) probably_damaging(1) TCGA-EE-A2M5-06 17 60754832 60754832 C T MRC2 Silent p.L679L 0.43 TCGA-EE-A2M5-06 17 60814024 60814024 G A MARCH10 Missense_Mutation p.S402L 0.45 tolerated(0.08) benign(0.027) TCGA-EE-A2M5-06 17 61568382 61568382 G A ACE Silent p.S903S 0.33 TCGA-EE-A2M5-06 17 62034642 62034642 G A SCN4A Silent p.L752L 0.21 TCGA-EE-A2M5-06 17 62034811 62034811 G A SCN4A Missense_Mutation p.S696L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 62481945 62481945 G A POLG2 Missense_Mutation p.S337F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 62504836 62504836 C T CEP95 Missense_Mutation p.P49L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 17 62893304 62893304 G A LRRC37A3 Silent p.L24L 0.09 TCGA-EE-A2M5-06 17 63157022 63157022 G A RGS9 Missense_Mutation p.E140K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 63533654 63533654 G A AXIN2 Silent p.L500L 0.43 TCGA-EE-A2M5-06 17 66986042 66986042 C T ABCA9 Silent p.R1289R 0.24 TCGA-EE-A2M5-06 17 67029972 67029972 C T ABCA9 Missense_Mutation p.D391N 0.33 tolerated(0.32) benign(0.042) TCGA-EE-A2M5-06 17 67080473 67080473 C T ABCA6 Silent p.L1428L 0.38 TCGA-EE-A2M5-06 17 6930106 6930106 G A BCL6B Silent p.S379S 0.33 TCGA-EE-A2M5-06 17 6930107 6930107 G A BCL6B Missense_Mutation p.G380R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 71282116 71282116 G A CDC42EP4 Missense_Mutation p.P175L 0.25 tolerated(0.8) benign(0.006) TCGA-EE-A2M5-06 17 71282117 71282117 G A CDC42EP4 Missense_Mutation p.P175S 0.26 tolerated(0.41) benign(0.218) TCGA-EE-A2M5-06 17 72436201 72436201 G A GPRC5C Missense_Mutation p.G141R 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2M5-06 17 72846716 72846716 C T GRIN2C Missense_Mutation p.R435K 0.24 tolerated(1) benign(0.027) TCGA-EE-A2M5-06 17 72938000 72938000 C T OTOP3 Silent p.S165S 0.36 TCGA-EE-A2M5-06 17 7293969 7293969 C T TMEM256-PLSCR3 Missense_Mutation p.G272E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 17 7330552 7330552 G A C17orf74 Silent p.R414R 0.42 TCGA-EE-A2M5-06 17 73625355 73625355 G A RECQL5 Silent p.V716V 0.27 TCGA-EE-A2M5-06 17 73908303 73908303 C T FBF1 Silent p.R1096R 0.36 TCGA-EE-A2M5-06 17 74154583 74154583 C T RNF157 Splice_Site p.X435_splice 0.34 TCGA-EE-A2M5-06 17 74566695 74566695 G A ST6GALNAC2 Missense_Mutation p.S242L 0.41 probably_damaging(0.983) TCGA-EE-A2M5-06 17 76128889 76128889 C T TMC8 Missense_Mutation p.R157C 0.27 tolerated(0.07) benign(0.163) TCGA-EE-A2M5-06 17 76421531 76421531 G A DNAH17 Missense_Mutation p.P4369L 0.28 probably_damaging(0.962) TCGA-EE-A2M5-06 17 76421532 76421532 G A DNAH17 Missense_Mutation p.P4369S 0.31 possibly_damaging(0.549) TCGA-EE-A2M5-06 17 76475110 76475110 G A DNAH17 Silent p.F2649F 0.21 TCGA-EE-A2M5-06 17 76503643 76503643 C T DNAH17 Missense_Mutation p.R1490Q 0.22 possibly_damaging(0.626) TCGA-EE-A2M5-06 17 76799751 76799751 C T USP36 Silent p.G842G 0.33 TCGA-EE-A2M5-06 17 7689558 7689558 C T DNAH2 Silent p.I2082I 0.36 TCGA-EE-A2M5-06 17 7691316 7691316 G A DNAH2 Splice_Site p.X2247_splice 0.33 TCGA-EE-A2M5-06 17 7751368 7751368 C T KDM6B Missense_Mutation p.P588S 0.13 unknown(0) TCGA-EE-A2M5-06 17 7751369 7751369 C T KDM6B Missense_Mutation p.P588L 0.14 unknown(0) TCGA-EE-A2M5-06 17 78389004 78389004 G A ENDOV Missense_Mutation p.E4K 0.33 tolerated(0.63) benign(0.004) TCGA-EE-A2M5-06 17 7849193 7849193 C T CNTROB Missense_Mutation p.P628S 0.34 tolerated(0.19) benign(0.392) TCGA-EE-A2M5-06 17 79220411 79220411 C T SLC38A10 Missense_Mutation p.A769T 0.20 tolerated(0.25) benign(0.014) TCGA-EE-A2M5-06 17 7951906 7951906 G A ALOX15B 3'UTR 0.25 TCGA-EE-A2M5-06 17 80320388 80320388 C T TEX19 Missense_Mutation p.P121L 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 17 8132738 8132738 G A CTC1 Missense_Mutation p.A1013V 0.16 deleterious(0) possibly_damaging(0.801) TCGA-EE-A2M5-06 17 8133691 8133691 C T CTC1 Missense_Mutation p.D952N 0.37 tolerated(0.44) benign(0.015) TCGA-EE-A2M5-06 17 9632244 9632244 G A USP43 Silent p.Q1103Q 0.18 TCGA-EE-A2M5-06 17 975864 975864 G A ABR Missense_Mutation p.P295L 0.46 tolerated(0.18) probably_damaging(0.991) TCGA-EE-A2M5-06 18 11868595 11868595 C T GNAL Nonsense_Mutation p.R322* 0.36 TCGA-EE-A2M5-06 18 12325201 12325201 C T TUBB6 Missense_Mutation p.S138L 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2M5-06 18 13387646 13387646 T G LDLRAD4 5'UTR 0.35 TCGA-EE-A2M5-06 18 14524953 14524953 C T POTEC Missense_Mutation p.E386K 0.22 tolerated(0.11) benign(0.023) TCGA-EE-A2M5-06 18 19239241 19239241 A C ABHD3 Silent p.T244T 0.36 TCGA-EE-A2M5-06 18 22023081 22023081 C T IMPACT Nonsense_Mutation p.Q187* 0.28 TCGA-EE-A2M5-06 18 24440749 24440749 C T AQP4 Nonsense_Mutation p.W227* 0.30 TCGA-EE-A2M5-06 18 28714589 28714589 G A DSC1 Nonsense_Mutation p.Q608* 0.28 TCGA-EE-A2M5-06 18 28911801 28911801 C T DSG1 Nonsense_Mutation p.R219* 0.27 TCGA-EE-A2M5-06 18 28934983 28934983 G A DSG1 Missense_Mutation p.E942K 0.27 deleterious(0) benign(0.385) TCGA-EE-A2M5-06 18 29052254 29052254 C T DSG3 Silent p.P635P 0.25 TCGA-EE-A2M5-06 18 29099784 29099784 G A DSG2 Missense_Mutation p.E34K 0.41 tolerated(0.24) benign(0.388) TCGA-EE-A2M5-06 18 29122510 29122510 C A DSG2 Missense_Mutation p.Q677K 0.34 tolerated(0.94) benign(0.021) TCGA-EE-A2M5-06 18 29790660 29790660 C T MEP1B Silent p.T372T 0.28 TCGA-EE-A2M5-06 18 29797058 29797058 C T MEP1B Nonsense_Mutation p.R622* 0.40 TCGA-EE-A2M5-06 18 29797885 29797885 G A MEP1B Missense_Mutation p.R683H 0.26 tolerated(0.13) benign(0.008) TCGA-EE-A2M5-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.35 benign(0.006) TCGA-EE-A2M5-06 18 32455319 32455319 C T DTNA Silent p.S533S 0.29 TCGA-EE-A2M5-06 18 33289755 33289755 G A GALNT1 3'UTR 0.30 TCGA-EE-A2M5-06 18 3879232 3879232 C T DLGAP1 Nonsense_Mutation p.W279* 0.35 TCGA-EE-A2M5-06 18 3879233 3879233 C T DLGAP1 Nonsense_Mutation p.W279* 0.35 TCGA-EE-A2M5-06 18 43310265 43310265 G A SLC14A1 Missense_Mutation p.E50K 0.28 tolerated(0.33) benign(0.218) TCGA-EE-A2M5-06 18 44559500 44559500 G A TCEB3B Silent p.P712P 0.30 TCGA-EE-A2M5-06 18 44559501 44559501 G A TCEB3B Missense_Mutation p.P712L 0.31 tolerated(0.13) benign(0.021) TCGA-EE-A2M5-06 18 47811704 47811704 G A CXXC1 Silent p.F219F 0.37 TCGA-EE-A2M5-06 18 48447507 48447507 G A ME2 Missense_Mutation p.E336K 0.37 tolerated(0.05) benign(0.165) TCGA-EE-A2M5-06 18 48703876 48703876 G A MEX3C Silent p.P275P 0.28 TCGA-EE-A2M5-06 18 50985684 50985684 G A DCC Missense_Mutation p.E1159K 0.37 deleterious(0.03) possibly_damaging(0.688) TCGA-EE-A2M5-06 18 52596037 52596037 C T CCDC68 Missense_Mutation p.G226E 0.29 deleterious(0.05) benign(0.03) TCGA-EE-A2M5-06 18 53017618 53017618 C T TCF4 Missense_Mutation p.R276Q 0.33 deleterious(0.01) possibly_damaging(0.691) TCGA-EE-A2M5-06 18 55143862 55143862 C T ONECUT2 Silent p.F474F 0.34 TCGA-EE-A2M5-06 18 56149252 56149252 T G ALPK2 Missense_Mutation p.N2106H 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 18 56274662 56274662 T C ALPK2 Missense_Mutation p.K40R 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M5-06 18 57103034 57103034 A T CCBE1 3'UTR 0.37 TCGA-EE-A2M5-06 18 59158012 59158012 G A CDH20 Missense_Mutation p.D76N 0.30 deleterious(0.05) possibly_damaging(0.513) TCGA-EE-A2M5-06 18 60036649 60036649 G A TNFRSF11A Missense_Mutation p.R500K 0.27 tolerated(1) benign(0.003) TCGA-EE-A2M5-06 18 60036650 60036650 G A TNFRSF11A Silent p.R500R 0.26 TCGA-EE-A2M5-06 18 61308203 61308203 T A SERPINB4 Missense_Mutation p.K125I 0.31 deleterious(0) probably_damaging(0.96) TCGA-EE-A2M5-06 18 61308225 61308225 C T SERPINB4 Missense_Mutation p.E118K 0.26 tolerated(0.92) benign(0.069) TCGA-EE-A2M5-06 18 61325864 61325864 C T SERPINB3 Missense_Mutation p.E118K 0.28 tolerated(0.87) benign(0.02) TCGA-EE-A2M5-06 18 61471958 61471958 G A SERPINB7 3'UTR 0.53 TCGA-EE-A2M5-06 18 61587116 61587116 C T SERPINB10 Missense_Mutation p.S156F 0.34 deleterious(0.02) possibly_damaging(0.903) TCGA-EE-A2M5-06 18 61620733 61620733 A G HMSD Missense_Mutation p.K15R 0.33 tolerated(0.19) benign(0.313) TCGA-EE-A2M5-06 18 67563103 67563103 G A CD226 Silent p.F187F 0.28 TCGA-EE-A2M5-06 18 70205947 70205947 T C CBLN2 Missense_Mutation p.K140E 0.27 tolerated(0.05) possibly_damaging(0.489) TCGA-EE-A2M5-06 18 70209173 70209173 C G CBLN2 Missense_Mutation p.D75H 0.40 deleterious(0) possibly_damaging(0.85) TCGA-EE-A2M5-06 18 70450954 70450954 C T NETO1 Missense_Mutation p.R276Q 0.28 tolerated(0.15) probably_damaging(0.946) TCGA-EE-A2M5-06 18 70526091 70526091 C T NETO1 Missense_Mutation p.G147R 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A2M5-06 18 747963 747963 G A YES1 Missense_Mutation p.P143S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 18 76752136 76752136 G A SALL3 Missense_Mutation p.E49K 0.44 deleterious(0.04) unknown(0) TCGA-EE-A2M5-06 18 76754462 76754462 C T SALL3 Missense_Mutation p.S824F 0.23 tolerated(0.21) benign(0.025) TCGA-EE-A2M5-06 18 76757144 76757144 C T SALL3 Missense_Mutation p.P1242L 0.28 deleterious(0) probably_damaging(0.968) TCGA-EE-A2M5-06 19 10247806 10247806 G A DNMT1 Missense_Mutation p.R1482C 0.24 tolerated(0.17) benign(0.011) TCGA-EE-A2M5-06 19 10260594 10260594 G A DNMT1 Silent p.T772T 0.22 TCGA-EE-A2M5-06 19 10692025 10692025 G A AP1M2 Missense_Mutation p.T197I 0.33 deleterious(0.03) benign(0.281) TCGA-EE-A2M5-06 19 11094794 11094794 C T SMARCA4 Intron 0.32 TCGA-EE-A2M5-06 19 11144843 11144843 C T SMARCA4 Silent p.I1306I 0.44 TCGA-EE-A2M5-06 19 11152020 11152020 A G SMARCA4 Missense_Mutation p.E1403G 0.24 possibly_damaging(0.597) TCGA-EE-A2M5-06 19 11942536 11942536 T C ZNF440 Missense_Mutation p.I182T 0.28 tolerated(0.56) possibly_damaging(0.525) TCGA-EE-A2M5-06 19 12924309 12924309 C T RNASEH2A 3'UTR 0.28 TCGA-EE-A2M5-06 19 13041110 13041110 G A FARSA Missense_Mutation p.R144W 0.33 deleterious(0) benign(0.259) TCGA-EE-A2M5-06 19 13409669 13409669 C T CACNA1A Silent p.G926G 0.29 TCGA-EE-A2M5-06 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.24 TCGA-EE-A2M5-06 19 13923934 13923934 C T ZSWIM4 Missense_Mutation p.S379F 0.19 deleterious(0.03) possibly_damaging(0.683) TCGA-EE-A2M5-06 19 14001203 14001203 G A C19orf57 Nonsense_Mutation p.Q156* 0.19 TCGA-EE-A2M5-06 19 14159847 14159847 C T IL27RA Missense_Mutation p.S399L 0.32 tolerated(0.78) benign(0.173) TCGA-EE-A2M5-06 19 15124523 15124523 G A CCDC105 Missense_Mutation p.E204K 0.40 tolerated(0.4) benign(0.134) TCGA-EE-A2M5-06 19 15222495 15222495 C T SYDE1 Silent p.P490P 0.42 TCGA-EE-A2M5-06 19 15579529 15579529 T C PGLYRP2 Missense_Mutation p.K559R 0.29 tolerated_low_confidence(0.9) benign(0) TCGA-EE-A2M5-06 19 15586610 15586610 C T PGLYRP2 Missense_Mutation p.E291K 0.20 tolerated(0.35) benign(0.05) TCGA-EE-A2M5-06 19 15586637 15586637 G A PGLYRP2 Missense_Mutation p.L282F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 19 15586981 15586981 G A PGLYRP2 Missense_Mutation p.A167V 0.32 tolerated(0.07) benign(0.016) TCGA-EE-A2M5-06 19 15587015 15587015 G A PGLYRP2 Missense_Mutation p.P156S 0.36 tolerated(0.06) benign(0.231) TCGA-EE-A2M5-06 19 15789169 15789169 C T CYP4F12 Silent p.I99I 0.29 TCGA-EE-A2M5-06 19 15839181 15839181 A C OR10H2 Missense_Mutation p.T110P 0.26 deleterious(0) probably_damaging(0.946) TCGA-EE-A2M5-06 19 16612055 16612055 C T C19orf44 Missense_Mutation p.S151F 0.31 tolerated(0.14) benign(0.01) TCGA-EE-A2M5-06 19 17081754 17081754 G A CPAMD8 Silent p.F767F 0.40 TCGA-EE-A2M5-06 19 17115153 17115153 C T CPAMD8 Silent p.L248L 0.25 TCGA-EE-A2M5-06 19 17752302 17752302 C T UNC13A Missense_Mutation p.G846S 0.35 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A2M5-06 19 18966754 18966754 C T UPF1 Missense_Mutation p.P522L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 19 19166145 19166145 C T ARMC6 Silent p.V365V 0.35 TCGA-EE-A2M5-06 19 19307806 19307806 C T RFXANK Silent p.T74T 0.19 TCGA-EE-A2M5-06 19 19339322 19339322 G A NCAN Missense_Mutation p.G965S 0.32 tolerated(0.05) possibly_damaging(0.759) TCGA-EE-A2M5-06 19 19339425 19339425 C T NCAN Missense_Mutation p.P999L 0.19 tolerated(0.06) benign(0.012) TCGA-EE-A2M5-06 19 19381050 19381050 G A TM6SF2 Silent p.F111F 0.30 TCGA-EE-A2M5-06 19 20117309 20117309 G A ZNF682 Silent p.T334T 0.21 TCGA-EE-A2M5-06 19 20118051 20118051 G A ZNF682 Missense_Mutation p.P87L 0.19 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A2M5-06 19 21476932 21476932 G A ZNF708 Missense_Mutation p.P279L 0.25 deleterious(0.02) possibly_damaging(0.803) TCGA-EE-A2M5-06 19 21990993 21990993 G A ZNF43 Missense_Mutation p.H616Y 0.17 deleterious(0.04) possibly_damaging(0.754) TCGA-EE-A2M5-06 19 21992020 21992020 A G ZNF43 Silent p.L273L 0.36 TCGA-EE-A2M5-06 19 22156665 22156665 G A ZNF208 Missense_Mutation p.H391Y 0.20 deleterious(0) probably_damaging(0.983) TCGA-EE-A2M5-06 19 22363492 22363492 C T ZNF676 Missense_Mutation p.G343R 0.25 deleterious(0) probably_damaging(0.972) TCGA-EE-A2M5-06 19 22939432 22939432 C T ZNF99 3'Flank 0.32 TCGA-EE-A2M5-06 19 22939527 22939527 G A ZNF99 3'Flank 0.33 TCGA-EE-A2M5-06 19 22941853 22941853 T A ZNF99 Missense_Mutation p.K286N 0.41 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A2M5-06 19 2834269 2834269 C T ZNF554 Missense_Mutation p.H346Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 19 2853797 2853797 C T ZNF555 Silent p.S578S 0.29 TCGA-EE-A2M5-06 19 2916978 2916978 C T ZNF57 Missense_Mutation p.A120V 0.32 deleterious(0.04) benign(0.091) TCGA-EE-A2M5-06 19 30935403 30935403 G A ZNF536 Missense_Mutation p.E312K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2M5-06 19 31039262 31039262 G A ZNF536 Silent p.V912V 0.28 TCGA-EE-A2M5-06 19 31039981 31039981 C T ZNF536 Missense_Mutation p.T1152I 0.23 tolerated_low_confidence(0.17) benign(0.063) TCGA-EE-A2M5-06 19 33464092 33464092 G A C19orf40 Intron 0.30 TCGA-EE-A2M5-06 19 34833157 34833157 C T KIAA0355 Missense_Mutation p.S773F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.549) TCGA-EE-A2M5-06 19 35719419 35719419 G A FAM187B Silent p.F55F 0.36 TCGA-EE-A2M5-06 19 36002486 36002486 C A DMKN Missense_Mutation p.G249C 0.32 tolerated_low_confidence(0.07) unknown(0) TCGA-EE-A2M5-06 19 36357426 36357426 C T KIRREL2 3'UTR 0.25 TCGA-EE-A2M5-06 19 36497567 36497567 C T SYNE4 Missense_Mutation p.E209K 0.30 tolerated(0.06) possibly_damaging(0.905) TCGA-EE-A2M5-06 19 36884177 36884177 G A ZFP82 Silent p.L355L 0.31 TCGA-EE-A2M5-06 19 37310620 37310620 G A ZNF790 Missense_Mutation p.P209L 0.17 tolerated(0.73) benign(0.002) TCGA-EE-A2M5-06 19 37904821 37904821 A C ZNF569 Missense_Mutation p.C247G 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M5-06 19 38103241 38103241 C T ZNF540 Missense_Mutation p.P354S 0.29 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2M5-06 19 38190444 38190444 G A ZNF607 Silent p.P196P 0.31 TCGA-EE-A2M5-06 19 38779819 38779819 T C SPINT2 Missense_Mutation p.F127L 0.37 deleterious(0.04) benign(0.067) TCGA-EE-A2M5-06 19 38984995 38984995 C T RYR1 Missense_Mutation p.S2093F 0.25 benign(0.039) TCGA-EE-A2M5-06 19 39823752 39823752 C T GMFG Silent p.E55E 0.28 TCGA-EE-A2M5-06 19 39914713 39914713 C T PLEKHG2 Silent p.I980I 0.31 TCGA-EE-A2M5-06 19 40408010 40408010 C T FCGBP Missense_Mutation p.G1571S 0.16 unknown(0) TCGA-EE-A2M5-06 19 41012161 41012161 G A SPTBN4 Missense_Mutation p.E562K 0.33 deleterious(0.02) possibly_damaging(0.76) TCGA-EE-A2M5-06 19 41135420 41135420 C T LTBP4 Missense_Mutation p.P1613S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 19 41223580 41223580 G A ITPKC Silent p.G180G 0.21 TCGA-EE-A2M5-06 19 41450331 41450331 C T AC092071.1 5'Flank 0.28 TCGA-EE-A2M5-06 19 41601888 41601888 G A CYP2A13 3'UTR 0.32 TCGA-EE-A2M5-06 19 41626322 41626322 C T CYP2F1 Silent p.F135F 0.36 TCGA-EE-A2M5-06 19 4171732 4171732 C T CREB3L3 Silent p.P384P 0.16 TCGA-EE-A2M5-06 19 4171733 4171733 C T CREB3L3 Nonsense_Mutation p.R385* 0.17 TCGA-EE-A2M5-06 19 41811714 41811714 C T HNRNPUL1 Missense_Mutation p.P799L 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2M5-06 19 42259524 42259524 G A CEACAM6 5'UTR 0.23 TCGA-EE-A2M5-06 19 42797168 42797168 C T CIC Missense_Mutation p.P1177L 0.23 probably_damaging(0.981) TCGA-EE-A2M5-06 19 42839300 42839300 C T MEGF8 Silent p.A224A 0.31 TCGA-EE-A2M5-06 19 43234067 43234067 G A PSG3 Missense_Mutation p.P284L 0.25 tolerated(0.08) possibly_damaging(0.904) TCGA-EE-A2M5-06 19 43259144 43259144 G A PSG8 Silent p.V328V 0.31 TCGA-EE-A2M5-06 19 43259287 43259287 G A PSG8 Missense_Mutation p.P281S 0.31 tolerated(0.07) probably_damaging(0.943) TCGA-EE-A2M5-06 19 43372135 43372135 G A PSG1 3'UTR 0.24 TCGA-EE-A2M5-06 19 43372369 43372369 C T PSG1 Missense_Mutation p.G376E 0.27 deleterious(0.01) possibly_damaging(0.79) TCGA-EE-A2M5-06 19 43429979 43429979 G A PSG7 Missense_Mutation p.R397C 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2M5-06 19 43441322 43441322 T G PSG7 5'UTR 0.33 TCGA-EE-A2M5-06 19 43586713 43586713 G A PSG2 Silent p.P3P 0.29 TCGA-EE-A2M5-06 19 4363869 4363869 G A SH3GL1 Silent p.L158L 0.18 TCGA-EE-A2M5-06 19 4363870 4363870 G A SH3GL1 Silent p.H157H 0.18 TCGA-EE-A2M5-06 19 43680251 43680251 C T PSG5 Silent p.E160E 0.28 TCGA-EE-A2M5-06 19 43859892 43859892 G A CD177 3'UTR 0.25 TCGA-EE-A2M5-06 19 44039444 44039444 G A ZNF575 Missense_Mutation p.G115S 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2M5-06 19 44058893 44058893 G A XRCC1 Missense_Mutation p.R107C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 19 44058894 44058894 G A XRCC1 Silent p.N106N 0.29 TCGA-EE-A2M5-06 19 4428803 4428803 C T CHAF1A Missense_Mutation p.S507F 0.30 deleterious(0.04) possibly_damaging(0.661) TCGA-EE-A2M5-06 19 4429773 4429773 C T CHAF1A Silent p.S614S 0.27 TCGA-EE-A2M5-06 19 44351942 44351942 C T ZNF283 Missense_Mutation p.H397Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 19 44352504 44352504 C T ZNF283 Missense_Mutation p.S584L 0.22 deleterious(0.04) benign(0.162) TCGA-EE-A2M5-06 19 44471164 44471171 AAACCTTT - ZNF221 Frame_Shift_Del p.K504Qfs*3 0.30 TCGA-EE-A2M5-06 19 44591126 44591126 C T ZNF284 Missense_Mutation p.R499C 0.50 deleterious(0.05) possibly_damaging(0.878) TCGA-EE-A2M5-06 19 44662093 44662093 C T ZNF234 Missense_Mutation p.H642Y 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 19 44891250 44891250 T C ZNF285 Missense_Mutation p.N386S 0.28 tolerated(0.16) benign(0.039) TCGA-EE-A2M5-06 19 45028069 45028069 C T CEACAM20 RNA 0.25 TCGA-EE-A2M5-06 19 4511782 4511782 C T PLIN4 Silent p.K716K 0.15 TCGA-EE-A2M5-06 19 45207391 45207391 C T CEACAM16 Silent p.V162V 0.18 TCGA-EE-A2M5-06 19 45899952 45899952 G A PPP1R13L Missense_Mutation p.P188L 0.33 deleterious(0) probably_damaging(0.961) TCGA-EE-A2M5-06 19 45901270 45901270 G A PPP1R13L Missense_Mutation p.P64L 0.44 deleterious_low_confidence(0.03) benign(0.351) TCGA-EE-A2M5-06 19 46281006 46281006 G A DMPK Silent p.F277F 0.33 TCGA-EE-A2M5-06 19 46299343 46299343 G A RSPH6A Silent p.I646I 0.35 TCGA-EE-A2M5-06 19 46318830 46318830 C T SYMPK Silent p.K1271K 0.32 TCGA-EE-A2M5-06 19 46663963 46663963 G A IGFL2 Missense_Mutation p.A67T 0.13 tolerated(1) benign(0.023) TCGA-EE-A2M5-06 19 46664135 46664135 A T IGFL2 Missense_Mutation p.E124V 0.30 tolerated(0.2) benign(0.046) TCGA-EE-A2M5-06 19 47773840 47773840 C T CCDC9 Missense_Mutation p.P327L 0.16 tolerated(0.14) benign(0.258) TCGA-EE-A2M5-06 19 47940789 47940789 C T SLC8A2 Silent p.T680T 0.23 TCGA-EE-A2M5-06 19 4817964 4817964 G A TICAM1 Silent p.N142N 0.27 TCGA-EE-A2M5-06 19 4844713 4844713 G A PLIN3 Silent p.L309L 0.21 TCGA-EE-A2M5-06 19 48544856 48544856 C T CABP5 Missense_Mutation p.R23K 0.24 deleterious(0.01) benign(0.149) TCGA-EE-A2M5-06 19 48887538 48887538 G A KDELR1 Silent p.L185L 0.38 TCGA-EE-A2M5-06 19 49110474 49110474 G A SPACA4 Missense_Mutation p.R80K 0.23 tolerated(0.8) benign(0.003) TCGA-EE-A2M5-06 19 49110475 49110475 G A SPACA4 Silent p.R80R 0.19 TCGA-EE-A2M5-06 19 49253551 49253551 G A FUT1 Silent p.L330L 0.38 TCGA-EE-A2M5-06 19 49254217 49254217 G A FUT1 Missense_Mutation p.R108C 0.29 deleterious(0.03) benign(0.284) TCGA-EE-A2M5-06 19 49254218 49254218 G T FUT1 Silent p.G107G 0.32 TCGA-EE-A2M5-06 19 4941585 4941585 C T UHRF1 RNA 0.26 TCGA-EE-A2M5-06 19 49547354 49547354 C T CGB5 5'UTR 0.42 TCGA-EE-A2M5-06 19 49552108 49552108 G A CGB8 5'UTR 0.37 TCGA-EE-A2M5-06 19 49793850 49793850 G A SLC6A16 Intron 0.35 TCGA-EE-A2M5-06 19 49925708 49925708 G A PTH2 3'UTR 0.31 TCGA-EE-A2M5-06 19 50165465 50165465 C T IRF3 Nonsense_Mutation p.W241* 0.25 TCGA-EE-A2M5-06 19 50209330 50209330 G A CPT1C Missense_Mutation p.E377K 0.23 tolerated(0.15) benign(0.254) TCGA-EE-A2M5-06 19 50784936 50784936 C T MYH14 Missense_Mutation p.A1459V 0.26 tolerated(0.24) benign(0.002) TCGA-EE-A2M5-06 19 50812330 50812330 C T MYH14 Silent p.S1952S 0.25 TCGA-EE-A2M5-06 19 50823902 50823902 G A KCNC3 Silent p.A706A 0.24 TCGA-EE-A2M5-06 19 50827210 50827210 G A KCNC3 Missense_Mutation p.P334S 0.23 tolerated(0.55) benign(0.085) TCGA-EE-A2M5-06 19 50863086 50863086 G A NAPSA Silent p.V234V 0.27 TCGA-EE-A2M5-06 19 50983406 50983406 C T EMC10 Silent p.I112I 0.18 TCGA-EE-A2M5-06 19 51323580 51323580 T G KLK1 Missense_Mutation p.H109P 0.30 tolerated(0.12) benign(0.094) TCGA-EE-A2M5-06 19 51326959 51326959 C T KLK1 Missense_Mutation p.G16S 0.42 deleterious(0.04) benign(0.103) TCGA-EE-A2M5-06 19 51465061 51465061 C T KLK6 Missense_Mutation p.G174D 0.19 tolerated(0.06) benign(0.063) TCGA-EE-A2M5-06 19 51501066 51501066 C T KLK8 Missense_Mutation p.G235R 0.35 tolerated(0.05) benign(0.162) TCGA-EE-A2M5-06 19 51633198 51633198 C T SIGLEC9 Intron 0.28 TCGA-EE-A2M5-06 19 51650087 51650087 C T SIGLEC7 Silent p.S368S 0.34 TCGA-EE-A2M5-06 19 51828705 51828705 G A IGLON5 Nonsense_Mutation p.W166* 0.21 TCGA-EE-A2M5-06 19 51914608 51914608 C T SIGLEC10 Silent p.Q613Q 0.27 TCGA-EE-A2M5-06 19 51960483 51960483 G A SIGLEC8 Missense_Mutation p.P246S 0.37 tolerated(0.33) benign(0.032) TCGA-EE-A2M5-06 19 51960867 51960867 G A SIGLEC8 Missense_Mutation p.A194V 0.20 tolerated(0.4) benign(0.093) TCGA-EE-A2M5-06 19 52090197 52090197 T G ZNF175 Missense_Mutation p.L205V 0.25 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A2M5-06 19 52217264 52217264 G A HAS1 Missense_Mutation p.R385C 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 19 52536865 52536865 T C ZNF432 3'UTR 0.22 TCGA-EE-A2M5-06 19 52537028 52537028 G A ZNF432 Missense_Mutation p.S635F 0.25 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A2M5-06 19 53269181 53269181 A T ZNF600 Missense_Mutation p.Y610N 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 19 53383908 53383908 G A ZNF320 Missense_Mutation p.P491S 0.32 deleterious(0) benign(0.119) TCGA-EE-A2M5-06 19 53612707 53612707 G A ZNF415 Silent p.F197F 0.29 TCGA-EE-A2M5-06 19 53762659 53762659 C T VN1R2 Missense_Mutation p.S344F 0.25 deleterious(0.02) possibly_damaging(0.515) TCGA-EE-A2M5-06 19 53994678 53994678 C T ZNF813 Missense_Mutation p.L398F 0.27 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A2M5-06 19 54080316 54080316 T G ZNF331 Missense_Mutation p.F168V 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 19 54172485 54172485 G A MIR512-2 RNA 0.39 TCGA-EE-A2M5-06 19 54385689 54385689 C T PRKCG 5'UTR 0.35 TCGA-EE-A2M5-06 19 54745664 54745664 C T LILRA6 Missense_Mutation p.G149E 0.19 tolerated(0.05) possibly_damaging(0.494) TCGA-EE-A2M5-06 19 54823372 54823372 G A LILRA5 Silent p.I57I 0.12 TCGA-EE-A2M5-06 19 55048124 55048124 G A KIR3DX1 Missense_Mutation p.D231N 0.14 deleterious(0.04) benign(0.038) TCGA-EE-A2M5-06 19 55086332 55086332 C T LILRA2 Missense_Mutation p.P163S 0.32 tolerated(1) benign(0.429) TCGA-EE-A2M5-06 19 55106306 55106306 T C LILRA1 Missense_Mutation p.F83L 0.41 tolerated(0.07) probably_damaging(0.93) TCGA-EE-A2M5-06 19 55143575 55143575 C T LILRB1 Missense_Mutation p.S183F 0.24 deleterious(0.02) benign(0.004) TCGA-EE-A2M5-06 19 55148388 55148388 C T LILRB1 3'UTR 0.27 TCGA-EE-A2M5-06 19 55224626 55224626 G A LILRP2 RNA 0.21 TCGA-EE-A2M5-06 19 55294397 55294397 C T KIR2DL1 Silent p.L247L 0.39 TCGA-EE-A2M5-06 19 55325198 55325198 G A KIR2DL4 Splice_Site p.X253_splice 0.50 TCGA-EE-A2M5-06 19 55451034 55451034 G A NLRP7 Missense_Mutation p.P385S 0.35 tolerated(0.58) benign(0.027) TCGA-EE-A2M5-06 19 55451699 55451699 G A NLRP7 Missense_Mutation p.P163L 0.28 deleterious(0.04) possibly_damaging(0.609) TCGA-EE-A2M5-06 19 55493645 55493645 C T NLRP2 Silent p.I193I 0.23 TCGA-EE-A2M5-06 19 55677912 55677912 G A DNAAF3 Silent p.S35S 0.32 TCGA-EE-A2M5-06 19 56204389 56204389 C T EPN1 Missense_Mutation p.S503F 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2M5-06 19 56204390 56204390 C T EPN1 Silent p.S503S 0.22 TCGA-EE-A2M5-06 19 56244544 56244544 G A NLRP9 Missense_Mutation p.S218F 0.31 deleterious(0.03) probably_damaging(0.975) TCGA-EE-A2M5-06 19 56321627 56321627 G A NLRP11 Missense_Mutation p.H117Y 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A2M5-06 19 56369100 56369100 A T NLRP4 Missense_Mutation p.K114M 0.10 tolerated(0.07) benign(0.109) TCGA-EE-A2M5-06 19 56392979 56392979 G A NLRP4 3'UTR 0.22 TCGA-EE-A2M5-06 19 56413448 56413448 G A NLRP13 Silent p.F914F 0.22 TCGA-EE-A2M5-06 19 56424257 56424257 A T NLRP13 Missense_Mutation p.I309N 0.18 deleterious(0) probably_damaging(0.93) TCGA-EE-A2M5-06 19 56424463 56424463 C T NLRP13 Silent p.G240G 0.19 TCGA-EE-A2M5-06 19 56466513 56466513 C T NLRP8 Silent p.I363I 0.32 TCGA-EE-A2M5-06 19 56467089 56467089 G A NLRP8 Missense_Mutation p.M555I 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2M5-06 19 56895604 56895604 G A ZNF582 Silent p.P394P 0.33 TCGA-EE-A2M5-06 19 57089348 57089348 C T ZNF470 Silent p.T517T 0.32 TCGA-EE-A2M5-06 19 57325417 57325417 C T PEG3 Missense_Mutation p.A1465T 0.24 tolerated(0.06) benign(0.395) TCGA-EE-A2M5-06 19 57326279 57326279 G A PEG3 Silent p.F1177F 0.31 TCGA-EE-A2M5-06 19 57328744 57328744 T C PEG3 Missense_Mutation p.K356E 0.21 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A2M5-06 19 57640194 57640194 T C USP29 Missense_Mutation p.F51L 0.39 deleterious(0) possibly_damaging(0.772) TCGA-EE-A2M5-06 19 57640539 57640539 G A USP29 Missense_Mutation p.G166S 0.32 tolerated(0.4) benign(0.01) TCGA-EE-A2M5-06 19 57641002 57641002 G A USP29 Nonsense_Mutation p.W320* 0.32 TCGA-EE-A2M5-06 19 5778626 5778626 G A CATSPERD Missense_Mutation p.R779K 0.33 tolerated_low_confidence(0.45) benign(0.014) TCGA-EE-A2M5-06 19 58049273 58049273 G A ZNF549 Missense_Mutation p.E301K 0.25 tolerated(0.26) possibly_damaging(0.772) TCGA-EE-A2M5-06 19 58420903 58420903 G A ZNF417 Missense_Mutation p.S248F 0.26 tolerated(0.13) benign(0.334) TCGA-EE-A2M5-06 19 58600174 58600174 G A ZSCAN18 Missense_Mutation p.S201F 0.20 tolerated(0.09) possibly_damaging(0.652) TCGA-EE-A2M5-06 19 58966929 58966929 C T ZNF324B Silent p.A206A 0.25 TCGA-EE-A2M5-06 19 615843 615843 C T HCN2 Missense_Mutation p.S680L 0.33 deleterious(0.02) benign(0.151) TCGA-EE-A2M5-06 19 6664871 6664871 T A TNFSF14 3'UTR 0.32 TCGA-EE-A2M5-06 19 6734246 6734246 G A GPR108 Silent p.S149S 0.28 TCGA-EE-A2M5-06 19 6763721 6763721 T C SH2D3A Silent p.Q13Q 0.33 TCGA-EE-A2M5-06 19 6903930 6903930 G A EMR1 Silent p.L257L 0.43 TCGA-EE-A2M5-06 19 7535057 7535057 C T ARHGEF18 Missense_Mutation p.S1132F 0.26 tolerated(0.07) benign(0.143) TCGA-EE-A2M5-06 19 7623821 7623821 G A PNPLA6 Silent p.G1171G 0.22 TCGA-EE-A2M5-06 19 7675458 7675458 C T CAMSAP3 Missense_Mutation p.P313L 0.30 tolerated(0.24) probably_damaging(0.947) TCGA-EE-A2M5-06 19 808653 808653 C T PTBP1 Silent p.L452L 0.33 TCGA-EE-A2M5-06 19 8131010 8131010 G A FBN3 Silent p.I2741I 0.31 TCGA-EE-A2M5-06 19 8188881 8188881 C T FBN3 Missense_Mutation p.E915K 0.27 deleterious(0) probably_damaging(0.979) TCGA-EE-A2M5-06 19 8654208 8654208 C T ADAMTS10 Silent p.E692E 0.30 TCGA-EE-A2M5-06 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.30 tolerated(0.13) benign(0.153) TCGA-EE-A2M5-06 19 9005671 9005671 G A MUC16 Silent p.P13245P 0.23 TCGA-EE-A2M5-06 19 9009333 9009333 A G MUC16 Missense_Mutation p.L13047P 0.25 probably_damaging(0.976) TCGA-EE-A2M5-06 19 9045834 9045834 C T MUC16 Missense_Mutation p.E11933K 0.23 benign(0.203) TCGA-EE-A2M5-06 19 9056448 9056448 G A MUC16 Missense_Mutation p.S10333F 0.36 benign(0.293) TCGA-EE-A2M5-06 19 9057356 9057356 C T MUC16 Silent p.T10030T 0.26 TCGA-EE-A2M5-06 19 9057556 9057556 C T MUC16 Missense_Mutation p.G9964R 0.35 unknown(0) TCGA-EE-A2M5-06 19 9061857 9061857 C T MUC16 Missense_Mutation p.G8530E 0.33 unknown(0) TCGA-EE-A2M5-06 19 9063622 9063622 A C MUC16 Missense_Mutation p.S7942A 0.26 unknown(0) TCGA-EE-A2M5-06 19 9071269 9071269 G A MUC16 Missense_Mutation p.P5393S 0.25 unknown(0) TCGA-EE-A2M5-06 19 9074894 9074894 G A MUC16 Silent p.S4184S 0.38 TCGA-EE-A2M5-06 19 9077502 9077502 G A MUC16 Missense_Mutation p.S3315F 0.34 unknown(0) TCGA-EE-A2M5-06 19 9082654 9082654 G A MUC16 Missense_Mutation p.S3054L 0.22 unknown(0) TCGA-EE-A2M5-06 19 9083542 9083542 G A MUC16 Missense_Mutation p.S2758F 0.45 unknown(0) TCGA-EE-A2M5-06 19 9088564 9088564 G A MUC16 Missense_Mutation p.P1084L 0.29 unknown(0) TCGA-EE-A2M5-06 19 9089213 9089213 C T MUC16 Missense_Mutation p.E868K 0.28 unknown(0) TCGA-EE-A2M5-06 19 9213977 9213977 C T OR7G2 Silent p.P2P 0.32 TCGA-EE-A2M5-06 19 9236929 9236929 C T OR7G3 Missense_Mutation p.G233E 0.24 deleterious(0.01) possibly_damaging(0.834) TCGA-EE-A2M5-06 19 9325081 9325081 C T OR7D4 Missense_Mutation p.V145I 0.13 tolerated(0.07) benign(0.181) TCGA-EE-A2M5-06 19 9577202 9577202 G A ZNF560 3'UTR 0.42 TCGA-EE-A2M5-06 19 9581123 9581123 C T ZNF560 Silent p.Q131Q 0.29 TCGA-EE-A2M5-06 19 9586018 9586018 T A ZNF560 5'UTR 0.36 TCGA-EE-A2M5-06 19 9801529 9801529 C T ZNF812 Missense_Mutation p.G217E 0.48 tolerated(0.11) benign(0.279) TCGA-EE-A2M5-06 1 100546060 100546060 C T HIAT1 Nonsense_Mutation p.Q371* 0.29 TCGA-EE-A2M5-06 1 103427776 103427776 C T COL11A1 Missense_Mutation p.G1024R 0.27 unknown(0) TCGA-EE-A2M5-06 1 103467507 103467507 C T COL11A1 Missense_Mutation p.G706S 0.22 unknown(0) TCGA-EE-A2M5-06 1 10386322 10386322 C T KIF1B Silent p.A897A 0.55 TCGA-EE-A2M5-06 1 108735313 108735313 G A SLC25A24 Intron 0.46 TCGA-EE-A2M5-06 1 11008769 11008769 G A C1orf127 Missense_Mutation p.H475Y 0.55 deleterious(0.03) possibly_damaging(0.887) TCGA-EE-A2M5-06 1 110170727 110170727 C T AMPD2 Missense_Mutation p.S422L 0.36 deleterious(0) probably_damaging(0.959) TCGA-EE-A2M5-06 1 110254872 110254872 C T GSTM5 5'Flank 0.22 TCGA-EE-A2M5-06 1 110302009 110302009 C T EPS8L3 Missense_Mutation p.E86K 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 1 110883707 110883707 T - RBM15 Frame_Shift_Del p.L561* 0.15 TCGA-EE-A2M5-06 1 111060265 111060265 A C KCNA10 Missense_Mutation p.L382R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 111996918 111996918 C T ATP5F1 Missense_Mutation p.R55C 0.26 deleterious(0.03) benign(0.028) TCGA-EE-A2M5-06 1 112309105 112309106 TC A DDX20 Frame_Shift_Del p.S687Ifs*33 0.28 TCGA-EE-A2M5-06 1 113232670 113232670 C T MOV10 Silent p.T262T 0.13 TCGA-EE-A2M5-06 1 115453110 115453110 C T SYCP1 Silent p.L471L 0.22 TCGA-EE-A2M5-06 1 117527523 117527523 C T PTGFRN Missense_Mutation p.P797S 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 1 119427724 119427724 G A TBX15 Silent p.V374V 0.32 TCGA-EE-A2M5-06 1 12020721 12020721 C T PLOD1 Nonsense_Mutation p.Q332* 0.38 TCGA-EE-A2M5-06 1 120458524 120458524 G A NOTCH2 Missense_Mutation p.P2274L 0.32 deleterious(0.02) benign(0.218) TCGA-EE-A2M5-06 1 12331142 12331142 C T VPS13D Silent p.I688I 0.54 TCGA-EE-A2M5-06 1 1322766 1322766 G A CCNL2 Nonsense_Mutation p.R470* 0.53 TCGA-EE-A2M5-06 1 143767740 143767740 G A PPIAL4G Missense_Mutation p.R37C 0.24 tolerated_low_confidence(0.16) benign(0.038) TCGA-EE-A2M5-06 1 144854639 144854639 C T PDE4DIP Silent p.R2277R 0.12 TCGA-EE-A2M5-06 1 144923702 144923702 C T PDE4DIP Silent p.E252E 0.15 TCGA-EE-A2M5-06 1 144931366 144931366 C T PDE4DIP Intron 0.20 TCGA-EE-A2M5-06 1 145273348 145273348 C T NOTCH2NL Missense_Mutation p.H68Y 0.07 deleterious(0.02) possibly_damaging(0.675) TCGA-EE-A2M5-06 1 145293380 145293380 C T NBPF10 5'UTR 0.04 TCGA-EE-A2M5-06 1 145310018 145310018 C T NBPF10 Missense_Mutation p.H586Y 0.20 benign(0.007) TCGA-EE-A2M5-06 1 147095669 147095669 C T BCL9 Nonsense_Mutation p.R1064* 0.34 TCGA-EE-A2M5-06 1 149398889 149398889 C T HIST2H3PS2 3'Flank 0.26 TCGA-EE-A2M5-06 1 150257076 150257076 C T C1orf51 Silent p.A197A 0.25 TCGA-EE-A2M5-06 1 150530542 150530542 G A ADAMTSL4 Missense_Mutation p.G767R 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A2M5-06 1 150956832 150956832 G A ANXA9 Missense_Mutation p.A115T 0.25 tolerated(0.09) possibly_damaging(0.886) TCGA-EE-A2M5-06 1 151774361 151774361 G A LINGO4 Missense_Mutation p.H274Y 0.24 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2M5-06 1 151804237 151804237 C T RORC Missense_Mutation p.D2N 0.32 deleterious_low_confidence(0) benign(0.388) TCGA-EE-A2M5-06 1 152081742 152081742 T C TCHH Silent p.E1317E 0.36 TCGA-EE-A2M5-06 1 152128337 152128337 G A RPTN Missense_Mutation p.S413F 0.36 deleterious(0.01) benign(0.002) TCGA-EE-A2M5-06 1 152128862 152128862 G A RPTN Missense_Mutation p.S238F 0.38 tolerated(0.07) benign(0.066) TCGA-EE-A2M5-06 1 152277329 152277329 C T FLG Missense_Mutation p.G3345R 0.20 unknown(0) TCGA-EE-A2M5-06 1 152277770 152277770 C T FLG Missense_Mutation p.V3198I 0.22 unknown(0) TCGA-EE-A2M5-06 1 152283876 152283876 C T FLG Silent p.Q1162Q 0.35 TCGA-EE-A2M5-06 1 152285642 152285642 C T FLG Missense_Mutation p.E574K 0.24 benign(0.118) TCGA-EE-A2M5-06 1 152326459 152326459 C T FLG2 Missense_Mutation p.R1268Q 0.34 unknown(0) TCGA-EE-A2M5-06 1 152882375 152882375 G A IVL Missense_Mutation p.M34I 0.23 tolerated_low_confidence(0.38) unknown(0) TCGA-EE-A2M5-06 1 152975848 152975848 C T SPRR3 Missense_Mutation p.P118S 0.27 tolerated(0.07) probably_damaging(0.941) TCGA-EE-A2M5-06 1 152975872 152975872 C T SPRR3 Missense_Mutation p.P126S 0.34 tolerated(0.07) possibly_damaging(0.46) TCGA-EE-A2M5-06 1 152976064 152976064 C T SPRR3 3'UTR 0.45 TCGA-EE-A2M5-06 1 153362584 153362584 C T S100A8 Missense_Mutation p.E93K 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.636) TCGA-EE-A2M5-06 1 154042812 154042812 C T NUP210L Missense_Mutation p.E831K 0.24 deleterious(0.04) benign(0.003) TCGA-EE-A2M5-06 1 155172102 155172102 C T THBS3 Missense_Mutation p.G350S 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A2M5-06 1 155935494 155935494 G A ARHGEF2 Missense_Mutation p.S133F 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-EE-A2M5-06 1 156437973 156437973 G A MEF2D Missense_Mutation p.P456S 0.22 tolerated(0.44) benign(0.006) TCGA-EE-A2M5-06 1 157514284 157514284 C T FCRL5 Silent p.G204G 0.22 TCGA-EE-A2M5-06 1 157650795 157650795 C T FCRL3 Missense_Mutation p.E645K 0.45 deleterious(0.01) possibly_damaging(0.656) TCGA-EE-A2M5-06 1 157668383 157668383 G A FCRL3 Missense_Mutation p.P30L 0.27 deleterious(0.04) possibly_damaging(0.658) TCGA-EE-A2M5-06 1 157803289 157803289 C T CD5L Silent p.L244L 0.27 TCGA-EE-A2M5-06 1 158262052 158262052 G A CD1C Silent p.Q169Q 0.30 TCGA-EE-A2M5-06 1 158325175 158325175 C T CD1E Silent p.F147F 0.21 TCGA-EE-A2M5-06 1 158612323 158612323 G A SPTA1 Silent p.L1539L 0.37 TCGA-EE-A2M5-06 1 159166791 159166791 G A CADM3 Missense_Mutation p.G332D 0.32 tolerated(0.29) benign(0.138) TCGA-EE-A2M5-06 1 159273745 159273745 A G FCER1A Missense_Mutation p.N35S 0.29 tolerated(0.26) benign(0.08) TCGA-EE-A2M5-06 1 159842754 159842754 C T CCDC19 Silent p.R519R 0.37 TCGA-EE-A2M5-06 1 159907537 159907537 C T IGSF9 Silent p.L113L 0.31 TCGA-EE-A2M5-06 1 160093166 160093166 G A ATP1A2 Missense_Mutation p.G114D 0.33 deleterious(0.02) benign(0.299) TCGA-EE-A2M5-06 1 160156065 160156065 G A ATP1A4 Splice_Site p.X990_splice 0.31 TCGA-EE-A2M5-06 1 160461004 160461004 C T SLAMF6 Missense_Mutation p.R186K 0.41 tolerated(1) benign(0.069) TCGA-EE-A2M5-06 1 160523163 160523163 C T CD84 Silent p.R255R 0.11 TCGA-EE-A2M5-06 1 160648891 160648891 C T CD48 Missense_Mutation p.S228N 0.34 tolerated(0.06) benign(0.008) TCGA-EE-A2M5-06 1 160784448 160784448 G A LY9 Silent p.K323K 0.19 TCGA-EE-A2M5-06 1 160850994 160850994 C T ITLN1 Missense_Mutation p.D172N 0.22 tolerated(0.85) benign(0.002) TCGA-EE-A2M5-06 1 161012647 161012647 C T USF1 Missense_Mutation p.E12K 0.35 tolerated(0.08) possibly_damaging(0.899) TCGA-EE-A2M5-06 1 161183835 161183835 T A NDUFS2 Intron 0.22 TCGA-EE-A2M5-06 1 161496302 161496302 C T HSPA6 Silent p.V618V 0.23 TCGA-EE-A2M5-06 1 161722226 161722226 G A DUSP12 Missense_Mutation p.E216K 0.28 tolerated(0.06) benign(0.033) TCGA-EE-A2M5-06 1 164761949 164761949 C T PBX1 Missense_Mutation p.H162Y 0.26 deleterious(0.03) probably_damaging(1) TCGA-EE-A2M5-06 1 165533111 165533111 C T LRRC52 3'UTR 0.37 TCGA-EE-A2M5-06 1 166039406 166039406 C T FAM78B 3'UTR 0.28 TCGA-EE-A2M5-06 1 166974571 166974571 C T MAEL Missense_Mutation p.P261L 0.40 tolerated(0.05) probably_damaging(0.959) TCGA-EE-A2M5-06 1 167515373 167515373 G A CREG1 Silent p.I208I 0.34 TCGA-EE-A2M5-06 1 169525915 169525915 G A F5 Silent p.I307I 0.44 TCGA-EE-A2M5-06 1 169541483 169541483 T A F5 Missense_Mutation p.I117F 0.28 deleterious(0) probably_damaging(0.951) TCGA-EE-A2M5-06 1 170699474 170699474 G A PRRX1 Intron 0.38 TCGA-EE-A2M5-06 1 171083441 171083441 C T FMO3 Silent p.S374S 0.39 TCGA-EE-A2M5-06 1 171254561 171254561 G A FMO1 Missense_Mutation p.D493N 0.30 tolerated(0.06) probably_damaging(0.963) TCGA-EE-A2M5-06 1 171544202 171544202 C T PRRC2C Missense_Mutation p.S2295L 0.29 probably_damaging(0.99) TCGA-EE-A2M5-06 1 171605338 171605338 T C MYOC Silent p.E414E 0.43 TCGA-EE-A2M5-06 1 171605844 171605844 C T MYOC Missense_Mutation p.G246R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 172501615 172501615 G A SUCO 5'Flank 0.50 TCGA-EE-A2M5-06 1 172628331 172628331 C A FASLG 5'UTR 0.36 TCGA-EE-A2M5-06 1 172634974 172634974 C T FASLG Silent p.L222L 0.36 TCGA-EE-A2M5-06 1 175097181 175097181 G A TNN Missense_Mutation p.G1020E 0.35 tolerated(0.05) benign(0.25) TCGA-EE-A2M5-06 1 176525329 176525329 G T PAPPA2 5'UTR 0.31 TCGA-EE-A2M5-06 1 177199095 177199095 C T BRINP2 Missense_Mutation p.P28L 0.26 tolerated_low_confidence(0.31) benign(0.002) TCGA-EE-A2M5-06 1 177247850 177247850 G A BRINP2 Silent p.R388R 0.12 TCGA-EE-A2M5-06 1 177247851 177247851 A G BRINP2 Missense_Mutation p.I389V 0.13 tolerated(0.82) benign(0.002) TCGA-EE-A2M5-06 1 178490418 178490418 G A TEX35 Intron 0.30 TCGA-EE-A2M5-06 1 179526183 179526183 C T NPHS2 Silent p.K239K 0.28 TCGA-EE-A2M5-06 1 180061872 180061872 C T CEP350 Missense_Mutation p.S2211L 0.19 benign(0.001) TCGA-EE-A2M5-06 1 180243580 180243580 G A LHX4 Missense_Mutation p.G347R 0.15 deleterious(0.03) possibly_damaging(0.544) TCGA-EE-A2M5-06 1 181021424 181021424 C T MR1 Missense_Mutation p.L220F 0.21 deleterious(0.02) benign(0.376) TCGA-EE-A2M5-06 1 181727961 181727961 T A CACNA1E Missense_Mutation p.F1521Y 0.27 deleterious(0) benign(0.418) TCGA-EE-A2M5-06 1 182027103 182027103 G A ZNF648 Missense_Mutation p.P15S 0.26 deleterious(0.03) benign(0.134) TCGA-EE-A2M5-06 1 182353819 182353819 G A GLUL Silent p.H281H 0.41 TCGA-EE-A2M5-06 1 186037103 186037103 C T HMCN1 Missense_Mutation p.P2615S 0.23 benign(0.4) TCGA-EE-A2M5-06 1 186086672 186086672 G A HMCN1 Missense_Mutation p.G3922E 0.35 probably_damaging(1) TCGA-EE-A2M5-06 1 186113689 186113689 C T HMCN1 Missense_Mutation p.A4707V 0.33 benign(0.084) TCGA-EE-A2M5-06 1 186292853 186292853 G A TPR Missense_Mutation p.H2088Y 0.30 benign(0.089) TCGA-EE-A2M5-06 1 18808266 18808266 C T KLHDC7A Missense_Mutation p.S264F 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 18808267 18808267 C T KLHDC7A Silent p.S264S 0.52 TCGA-EE-A2M5-06 1 192335101 192335101 A T RGS21 Missense_Mutation p.E102D 0.31 tolerated(0.23) benign(0.073) TCGA-EE-A2M5-06 1 196883689 196883689 C T CFHR4 Silent p.L414L 0.22 TCGA-EE-A2M5-06 1 197896838 197896838 C T LHX9 Missense_Mutation p.S284F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 1 198676022 198676022 C T PTPRC Missense_Mutation p.S282F 0.38 tolerated(0.1) benign(0.009) TCGA-EE-A2M5-06 1 198704324 198704324 G A PTPRC Silent p.K782K 0.13 TCGA-EE-A2M5-06 1 201030530 201030530 C T CACNA1S Silent p.E1040E 0.26 TCGA-EE-A2M5-06 1 201061174 201061174 C T CACNA1S Missense_Mutation p.G156E 0.28 tolerated(0.09) benign(0.292) TCGA-EE-A2M5-06 1 201331124 201331124 C T TNNT2 Silent p.Q202Q 0.36 TCGA-EE-A2M5-06 1 201332553 201332553 G A TNNT2 Intron 0.23 TCGA-EE-A2M5-06 1 202705423 202705423 G A KDM5B Missense_Mutation p.T1061I 0.22 tolerated(0.15) benign(0.039) TCGA-EE-A2M5-06 1 202710703 202710703 G A KDM5B Missense_Mutation p.R913C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 203316946 203316946 G A FMOD Silent p.F151F 0.27 TCGA-EE-A2M5-06 1 204129794 204129794 A T REN Missense_Mutation p.L129H 0.31 deleterious(0.02) benign(0.01) TCGA-EE-A2M5-06 1 204948605 204948605 C T NFASC Silent p.Y698Y 0.17 TCGA-EE-A2M5-06 1 205035016 205035016 G A CNTN2 Missense_Mutation p.E599K 0.30 deleterious(0.04) benign(0.232) TCGA-EE-A2M5-06 1 205892544 205892544 G A SLC26A9 Silent p.I526I 0.23 TCGA-EE-A2M5-06 1 205899084 205899084 G A SLC26A9 Missense_Mutation p.S218L 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 1 206711525 206711525 A T RASSF5 Missense_Mutation p.E161V 0.36 deleterious(0.01) possibly_damaging(0.785) TCGA-EE-A2M5-06 1 207078479 207078479 G A FAIM3 Missense_Mutation p.P353L 0.37 tolerated(0.18) benign(0.018) TCGA-EE-A2M5-06 1 207110656 207110656 C T PIGR Missense_Mutation p.E277K 0.18 tolerated(0.86) benign(0.008) TCGA-EE-A2M5-06 1 207627786 207627786 G A CR2 Missense_Mutation p.G8E 0.24 deleterious(0.04) benign(0.003) TCGA-EE-A2M5-06 1 207741283 207741283 G A CR1 Missense_Mutation p.R1356K 0.17 tolerated(0.71) benign(0.152) TCGA-EE-A2M5-06 1 208207908 208207908 G A PLXNA2 Silent p.V1598V 0.36 TCGA-EE-A2M5-06 1 209788518 209788518 G A LAMB3 3'UTR 0.33 TCGA-EE-A2M5-06 1 21048471 21048471 G A SH2D5 Silent p.F362F 0.48 TCGA-EE-A2M5-06 1 213068683 213068683 C T FLVCR1 3'UTR 0.25 TCGA-EE-A2M5-06 1 213303012 213303012 G C RPS6KC1 Silent p.G205G 0.09 TCGA-EE-A2M5-06 1 213445937 213445937 C T RPS6KC1 Missense_Mutation p.P1054L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 214171352 214171352 C T PROX1 Missense_Mutation p.P492S 0.33 tolerated(0.55) probably_damaging(0.99) TCGA-EE-A2M5-06 1 214557016 214557016 G A PTPN14 Missense_Mutation p.R728W 0.34 deleterious(0.01) benign(0.28) TCGA-EE-A2M5-06 1 214818204 214818204 G A CENPF Missense_Mutation p.G1764E 0.22 benign(0.002) TCGA-EE-A2M5-06 1 214818205 214818205 G A CENPF Silent p.G1764G 0.22 TCGA-EE-A2M5-06 1 216373101 216373101 C T USH2A Missense_Mutation p.G1227S 0.37 possibly_damaging(0.887) TCGA-EE-A2M5-06 1 22156038 22156038 G A HSPG2 Missense_Mutation p.L3944F 0.33 probably_damaging(0.999) TCGA-EE-A2M5-06 1 22161318 22161318 A G HSPG2 Missense_Mutation p.V3525A 0.33 possibly_damaging(0.863) TCGA-EE-A2M5-06 1 222802465 222802465 C T MIA3 Missense_Mutation p.P635S 0.27 tolerated(0.07) benign(0.435) TCGA-EE-A2M5-06 1 223465924 223465924 C T SUSD4 Missense_Mutation p.G73E 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 1 224455761 224455761 A G NVL Silent p.F719F 0.21 TCGA-EE-A2M5-06 1 226564857 226564857 G A PARP1 Silent p.F631F 0.34 TCGA-EE-A2M5-06 1 228437821 228437821 C T OBSCN Nonsense_Mutation p.R1489* 0.40 TCGA-EE-A2M5-06 1 231339636 231339636 C T TRIM67 Silent p.L520L 0.24 TCGA-EE-A2M5-06 1 236631531 236631531 G A EDARADD Missense_Mutation p.G74R 0.29 tolerated(0.58) benign(0.008) TCGA-EE-A2M5-06 1 237780633 237780633 G A RYR2 Silent p.R1921R 0.33 TCGA-EE-A2M5-06 1 238090459 238090459 G A RP11-193H5.1 RNA 0.50 TCGA-EE-A2M5-06 1 240601493 240601493 A C FMN2 Missense_Mutation p.K1681N 0.24 probably_damaging(0.958) TCGA-EE-A2M5-06 1 24383871 24383871 C T MYOM3 Missense_Mutation p.E1433K 0.64 deleterious(0.02) benign(0.11) TCGA-EE-A2M5-06 1 24406678 24406678 G - MYOM3 Frame_Shift_Del p.P805Rfs*57 0.09 TCGA-EE-A2M5-06 1 244852555 244852555 T A DESI2 Missense_Mutation p.F40L 0.21 deleterious(0) possibly_damaging(0.643) TCGA-EE-A2M5-06 1 245245421 245245421 G A EFCAB2 Missense_Mutation p.E74K 0.26 deleterious(0.04) benign(0.261) TCGA-EE-A2M5-06 1 247320008 247320008 G A ZNF124 Missense_Mutation p.R244C 0.35 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2M5-06 1 247586558 247586558 C T NLRP3 Missense_Mutation p.P104S 0.21 tolerated(0.35) benign(0) TCGA-EE-A2M5-06 1 247586560 247586560 C T NLRP3 Silent p.P104P 0.20 TCGA-EE-A2M5-06 1 247588870 247588870 C T NLRP3 Missense_Mutation p.P709S 0.38 tolerated(0.17) benign(0.004) TCGA-EE-A2M5-06 1 247875554 247875554 G A OR6F1 Silent p.F168F 0.39 TCGA-EE-A2M5-06 1 248039598 248039598 C T TRIM58 Missense_Mutation p.S423L 0.31 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 1 248224624 248224624 C T OR2L3 Missense_Mutation p.S214L 0.24 tolerated(1) benign(0.002) TCGA-EE-A2M5-06 1 248262848 248262848 G A OR2L13 Silent p.P57P 0.34 TCGA-EE-A2M5-06 1 248343836 248343836 C T OR2M2 Silent p.S183S 0.28 TCGA-EE-A2M5-06 1 248343914 248343914 C T OR2M2 Silent p.F209F 0.18 TCGA-EE-A2M5-06 1 248366491 248366491 G A OR2M3 Missense_Mutation p.G41E 0.32 deleterious(0.04) benign(0.049) TCGA-EE-A2M5-06 1 248437021 248437021 G A OR2T33 Silent p.I32I 0.46 TCGA-EE-A2M5-06 1 248487623 248487623 A G OR2M7 Missense_Mutation p.F83S 0.31 tolerated(0.21) benign(0.104) TCGA-EE-A2M5-06 1 248525490 248525490 C T OR2T4 Missense_Mutation p.S203F 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A2M5-06 1 248551611 248551611 G A OR2T6 Silent p.R234R 0.35 TCGA-EE-A2M5-06 1 26508373 26508373 T A CNKSR1 Missense_Mutation p.F140I 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 1 26584097 26584097 G A CEP85 Missense_Mutation p.G305R 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 1 26584098 26584098 G A CEP85 Missense_Mutation p.G305E 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 1 27278511 27278511 C T C1orf172 Missense_Mutation p.G121R 0.61 tolerated(0.56) benign(0.003) TCGA-EE-A2M5-06 1 27278512 27278512 C T C1orf172 Silent p.E120E 0.61 TCGA-EE-A2M5-06 1 27278778 27278778 T C C1orf172 Missense_Mutation p.K32E 0.23 tolerated(0.64) benign(0) TCGA-EE-A2M5-06 1 28477119 28477119 G A PTAFR Silent p.S138S 0.38 TCGA-EE-A2M5-06 1 28661301 28661301 C T MED18 Silent p.F149F 0.25 TCGA-EE-A2M5-06 1 28661513 28661513 C T MED18 3'UTR 0.28 TCGA-EE-A2M5-06 1 32134409 32134409 C T COL16A1 Silent p.G1081G 0.29 TCGA-EE-A2M5-06 1 32673255 32673255 C T IQCC Missense_Mutation p.P405S 0.35 tolerated_low_confidence(0.17) possibly_damaging(0.82) TCGA-EE-A2M5-06 1 33236042 33236042 C T KIAA1522 Missense_Mutation p.S421F 0.36 deleterious(0) unknown(0) TCGA-EE-A2M5-06 1 3331170 3331170 G A PRDM16 Missense_Mutation p.E884K 0.23 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2M5-06 1 3350266 3350266 C T PRDM16 Missense_Mutation p.S1241F 0.45 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 1 33960447 33960447 C T ZSCAN20 Missense_Mutation p.P835S 0.22 tolerated(1) benign(0.024) TCGA-EE-A2M5-06 1 34383744 34383744 C T CSMD2 Missense_Mutation p.D251N 0.41 tolerated(0.07) possibly_damaging(0.88) TCGA-EE-A2M5-06 1 34667806 34667806 G A C1orf94 Silent p.L464L 0.28 TCGA-EE-A2M5-06 1 35227594 35227594 G A GJB4 Missense_Mutation p.D247N 0.28 tolerated(0.27) benign(0.02) TCGA-EE-A2M5-06 1 35972519 35972519 C T KIAA0319L Silent p.R120R 0.29 TCGA-EE-A2M5-06 1 35972520 35972520 C T KIAA0319L Missense_Mutation p.R120K 0.29 tolerated(0.35) benign(0.002) TCGA-EE-A2M5-06 1 36637121 36637121 G A MAP7D1 Silent p.K133K 0.21 TCGA-EE-A2M5-06 1 36786171 36786171 C T SH3D21 Missense_Mutation p.P636L 0.29 tolerated(0.1) benign(0.081) TCGA-EE-A2M5-06 1 37267467 37267467 G A GRIK3 Silent p.A915A 0.36 TCGA-EE-A2M5-06 1 37267627 37267627 A G GRIK3 Missense_Mutation p.V862A 0.27 deleterious(0.02) benign(0.017) TCGA-EE-A2M5-06 1 37267628 37267628 C T GRIK3 Missense_Mutation p.V862M 0.33 tolerated(1) benign(0.001) TCGA-EE-A2M5-06 1 37270690 37270690 G A GRIK3 Silent p.I821I 0.33 TCGA-EE-A2M5-06 1 37346270 37346270 C T GRIK3 Nonsense_Mutation p.W172* 0.29 TCGA-EE-A2M5-06 1 38265299 38265299 C T MANEAL Silent p.L266L 0.31 TCGA-EE-A2M5-06 1 38450406 38450406 G A SF3A3 Nonsense_Mutation p.R117* 0.22 TCGA-EE-A2M5-06 1 40773873 40773873 T A COL9A2 Missense_Mutation p.K297N 0.45 deleterious(0) benign(0.403) TCGA-EE-A2M5-06 1 43395707 43395707 C T SLC2A1 Splice_Site p.X173_splice 0.11 TCGA-EE-A2M5-06 1 43786957 43786957 T G TIE1 Missense_Mutation p.L1042R 0.31 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 1 44069127 44069127 C T PTPRF Missense_Mutation p.S794F 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 1 44680553 44680553 T G DMAP1 Missense_Mutation p.F126V 0.20 deleterious(0) probably_damaging(0.982) TCGA-EE-A2M5-06 1 45101966 45101966 G A RNF220 Intron 0.42 TCGA-EE-A2M5-06 1 45471463 45471463 C T HECTD3 Intron 0.15 TCGA-EE-A2M5-06 1 45485811 45485811 C T ZSWIM5 Silent p.R874R 0.31 TCGA-EE-A2M5-06 1 45887402 45887402 G A TESK2 Silent p.I113I 0.24 TCGA-EE-A2M5-06 1 45887403 45887403 A T TESK2 Missense_Mutation p.I113N 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M5-06 1 46165629 46165629 C T IPP 3'UTR 0.38 TCGA-EE-A2M5-06 1 46649919 46649919 C T TSPAN1 Silent p.S38S 0.21 TCGA-EE-A2M5-06 1 47183625 47183625 G A EFCAB14 Silent p.S45S 0.32 TCGA-EE-A2M5-06 1 47282750 47282750 C T CYP4B1 Silent p.T368T 0.26 TCGA-EE-A2M5-06 1 47333708 47333708 G A CYP4Z2P RNA 0.44 TCGA-EE-A2M5-06 1 53535775 53535775 G C PODN Missense_Mutation p.G131A 0.36 tolerated(0.56) benign(0.01) TCGA-EE-A2M5-06 1 53553807 53553807 G A SLC1A7 Silent p.S519S 0.40 TCGA-EE-A2M5-06 1 54417990 54417990 C T LRRC42 Silent p.S106S 0.21 TCGA-EE-A2M5-06 1 54417991 54417991 C T LRRC42 Missense_Mutation p.L107F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 1 54534469 54534469 T G TCEANC2 Missense_Mutation p.M48R 0.29 deleterious(0.02) benign(0.025) TCGA-EE-A2M5-06 1 57161832 57161832 G A PRKAA2 Missense_Mutation p.R263K 0.23 tolerated(0.28) possibly_damaging(0.57) TCGA-EE-A2M5-06 1 57173217 57173217 G A PRKAA2 Missense_Mutation p.R497K 0.27 tolerated(0.59) benign(0.041) TCGA-EE-A2M5-06 1 57192233 57192233 C T C1orf168 Nonsense_Mutation p.W606* 0.18 TCGA-EE-A2M5-06 1 57411605 57411605 C T C8B Missense_Mutation p.E332K 0.28 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2M5-06 1 57411606 57411606 C T C8B Silent p.G331G 0.30 TCGA-EE-A2M5-06 1 57611083 57611083 G A DAB1 Silent p.A29A 0.31 TCGA-EE-A2M5-06 1 59042086 59042086 C T TACSTD2 Missense_Mutation p.G248E 0.38 deleterious(0.02) probably_damaging(1) TCGA-EE-A2M5-06 1 60538248 60538248 C T C1orf87 Missense_Mutation p.G23E 0.32 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2M5-06 1 62237271 62237271 C T INADL Silent p.S231S 0.16 TCGA-EE-A2M5-06 1 62237272 62237272 C T INADL Silent p.L232L 0.16 TCGA-EE-A2M5-06 1 62728940 62728940 G A KANK4 Missense_Mutation p.S788F 0.24 deleterious(0) benign(0.065) TCGA-EE-A2M5-06 1 64095621 64095621 C T PGM1 Missense_Mutation p.P158S 0.22 deleterious(0.04) benign(0.026) TCGA-EE-A2M5-06 1 64095622 64095622 C T PGM1 Missense_Mutation p.P158L 0.22 deleterious(0.01) possibly_damaging(0.608) TCGA-EE-A2M5-06 1 6453328 6453328 G A RP1-202O8.3 5'Flank 0.21 TCGA-EE-A2M5-06 1 65858274 65858274 G A DNAJC6 Silent p.Q543Q 0.23 TCGA-EE-A2M5-06 1 68512287 68512287 G A DIRAS3 3'UTR 0.41 TCGA-EE-A2M5-06 1 68512384 68512384 C T DIRAS3 Silent p.K199K 0.24 TCGA-EE-A2M5-06 1 74671073 74671073 C T FPGT Missense_Mutation p.P448S 0.32 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A2M5-06 1 74819684 74819684 C T FPGT-TNNI3K Missense_Mutation p.H464Y 0.27 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2M5-06 1 75171930 75171930 G A CRYZ 3'UTR 0.31 TCGA-EE-A2M5-06 1 76253646 76253646 C T RABGGTB Intron 0.26 TCGA-EE-A2M5-06 1 82453017 82453017 C T LPHN2 Intron 0.11 TCGA-EE-A2M5-06 1 82456096 82456096 G A LPHN2 Missense_Mutation p.R1160K 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2M5-06 1 84668433 84668433 C T PRKACB Missense_Mutation p.P284L 0.25 deleterious(0) probably_damaging(0.98) TCGA-EE-A2M5-06 1 86889856 86889856 C T CLCA2 5'UTR 0.42 TCGA-EE-A2M5-06 1 89448294 89448295 - C RBMXL1 3'UTR 0.27 TCGA-EE-A2M5-06 1 89875863 89875863 G A GBP1P1 5'Flank 0.24 TCGA-EE-A2M5-06 1 91182155 91182155 C T BARHL2 Missense_Mutation p.D200N 0.40 tolerated(0.05) unknown(0) TCGA-EE-A2M5-06 1 93602644 93602644 C T MTF2 3'UTR 0.45 TCGA-EE-A2M5-06 1 93602645 93602645 C T MTF2 3'UTR 0.44 TCGA-EE-A2M5-06 1 97658667 97658667 C T DPYD Silent p.Q860Q 0.38 TCGA-EE-A2M5-06 20 10019183 10019183 C T ANKEF1 Silent p.D78D 0.37 TCGA-EE-A2M5-06 20 10026277 10026277 G A ANKEF1 Missense_Mutation p.G251E 0.22 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2M5-06 20 10030294 10030294 C T ANKEF1 Silent p.F359F 0.19 TCGA-EE-A2M5-06 20 10030800 10030800 C T ANKEF1 Missense_Mutation p.P528L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 20 10603735 10603735 C T SLX4IP Missense_Mutation p.S312F 0.37 tolerated(0.07) possibly_damaging(0.875) TCGA-EE-A2M5-06 20 1161792 1161792 C T TMEM74B Silent p.R157R 0.31 TCGA-EE-A2M5-06 20 18370464 18370464 G A DZANK1 Silent p.D633D 0.28 TCGA-EE-A2M5-06 20 1961245 1961245 G A PDYN Silent p.L163L 0.31 TCGA-EE-A2M5-06 20 19677462 19677462 C T SLC24A3 Silent p.L505L 0.39 TCGA-EE-A2M5-06 20 19701694 19701694 C T SLC24A3 Silent p.L615L 0.34 TCGA-EE-A2M5-06 20 20033190 20033190 C T CRNKL1 Missense_Mutation p.E94K 0.35 deleterious_low_confidence(0) benign(0) TCGA-EE-A2M5-06 20 20484092 20484092 C T RALGAPA2 Missense_Mutation p.G1704E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 20 23433368 23433368 C T CST11 Silent p.R27R 0.27 TCGA-EE-A2M5-06 20 2381043 2381043 G A TGM6 Silent p.V314V 0.43 TCGA-EE-A2M5-06 20 24929980 24929980 G A CST7 5'UTR 0.30 TCGA-EE-A2M5-06 20 25203367 25203367 C T ENTPD6 Intron 0.32 TCGA-EE-A2M5-06 20 25457554 25457554 C T NINL Silent p.A791A 0.08 TCGA-EE-A2M5-06 20 30126009 30126009 C T HM13 Silent p.L104L 0.51 TCGA-EE-A2M5-06 20 30142581 30142581 C T HM13 Missense_Mutation p.L253F 0.15 tolerated(0.17) benign(0.005) TCGA-EE-A2M5-06 20 3025445 3025445 C T GNRH2 Missense_Mutation p.S92F 0.30 tolerated_low_confidence(0.71) benign(0.248) TCGA-EE-A2M5-06 20 31421626 31421626 C T MAPRE1 Silent p.F75F 0.42 TCGA-EE-A2M5-06 20 3251088 3251088 T A C20orf194 Missense_Mutation p.N924I 0.46 deleterious(0.01) possibly_damaging(0.724) TCGA-EE-A2M5-06 20 3321290 3321290 G A C20orf194 Intron 0.40 TCGA-EE-A2M5-06 20 33575683 33575683 G A MYH7B Missense_Mutation p.G503E 0.50 probably_damaging(1) TCGA-EE-A2M5-06 20 33578591 33578591 C T MYH7B Silent p.F718F 0.21 TCGA-EE-A2M5-06 20 33764058 33764058 G A PROCR Missense_Mutation p.G137E 0.40 deleterious(0.03) benign(0.347) TCGA-EE-A2M5-06 20 34810283 34810283 C T EPB41L1 Silent p.D868D 0.46 TCGA-EE-A2M5-06 20 37384523 37384523 G A ACTR5 Missense_Mutation p.M339I 0.40 tolerated(0.22) benign(0.156) TCGA-EE-A2M5-06 20 40162107 40162107 C T CHD6 Missense_Mutation p.E46K 0.27 deleterious_low_confidence(0.01) benign(0.011) TCGA-EE-A2M5-06 20 41306506 41306506 C T PTPRT Missense_Mutation p.D385N 0.23 deleterious(0) possibly_damaging(0.624) TCGA-EE-A2M5-06 20 41306746 41306746 G A PTPRT Silent p.L305L 0.54 TCGA-EE-A2M5-06 20 42163498 42163498 G A L3MBTL1 Missense_Mutation p.D559N 0.36 deleterious(0.03) possibly_damaging(0.854) TCGA-EE-A2M5-06 20 43804687 43804687 C T PI3 Missense_Mutation p.P89S 0.37 tolerated(0.12) possibly_damaging(0.754) TCGA-EE-A2M5-06 20 43837183 43837183 A T SEMG1 Missense_Mutation p.Q415H 0.42 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A2M5-06 20 43851922 43851922 C T SEMG2 Missense_Mutation p.S550F 0.34 tolerated(0.17) probably_damaging(0.99) TCGA-EE-A2M5-06 20 43956024 43956024 G A SDC4 Silent p.L159L 0.44 TCGA-EE-A2M5-06 20 44003911 44003911 G A TP53TG5 Missense_Mutation p.T179I 0.22 deleterious(0.01) benign(0.406) TCGA-EE-A2M5-06 20 44686191 44686191 C T SLC12A5 Missense_Mutation p.R1123W 0.43 deleterious(0) probably_damaging(0.984) TCGA-EE-A2M5-06 20 46331341 46331341 G A SULF2 Silent p.L163L 0.38 TCGA-EE-A2M5-06 20 46365559 46365559 G A SULF2 Silent p.V101V 0.39 TCGA-EE-A2M5-06 20 4773227 4773227 C T RASSF2 Missense_Mutation p.V112M 0.29 tolerated(0.1) benign(0.088) TCGA-EE-A2M5-06 20 4773228 4773228 C T RASSF2 Silent p.E111E 0.30 TCGA-EE-A2M5-06 20 48156158 48156158 G A PTGIS Missense_Mutation p.R208C 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 20 50140318 50140318 G C NFATC2 Silent p.P154P 0.71 TCGA-EE-A2M5-06 20 50769309 50769309 G A ZFP64 Silent p.P474P 0.31 TCGA-EE-A2M5-06 20 50769310 50769310 G A ZFP64 Missense_Mutation p.P474L 0.31 tolerated(0.19) benign(0.076) TCGA-EE-A2M5-06 20 51872404 51872404 C T TSHZ2 Missense_Mutation p.P803S 0.27 tolerated(0.2) probably_damaging(0.998) TCGA-EE-A2M5-06 20 51872600 51872600 C T TSHZ2 Missense_Mutation p.S868L 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2M5-06 20 5282769 5282769 C T PROKR2 Missense_Mutation p.G358R 0.26 tolerated(0.1) benign(0.275) TCGA-EE-A2M5-06 20 56078656 56078656 A T CTCFL Missense_Mutation p.I559N 0.38 tolerated(0.93) benign(0) TCGA-EE-A2M5-06 20 56191424 56191424 G A ZBP1 Silent p.L45L 0.26 TCGA-EE-A2M5-06 20 57287539 57287539 T C NPEPL1 Missense_Mutation p.F302S 0.36 deleterious(0.01) possibly_damaging(0.688) TCGA-EE-A2M5-06 20 57392737 57392737 C T MIR296 RNA 0.44 TCGA-EE-A2M5-06 20 57829592 57829592 A G ZNF831 Missense_Mutation p.S1610G 0.44 tolerated(0.25) benign(0.039) TCGA-EE-A2M5-06 20 61143663 61143663 C T C20orf166 5'Flank 0.25 TCGA-EE-A2M5-06 20 61944589 61944589 C T COL20A1 Missense_Mutation p.R733C 0.41 tolerated(0.05) benign(0.014) TCGA-EE-A2M5-06 20 62203672 62203672 G A HELZ2 Missense_Mutation p.P23S 0.53 tolerated(0.58) benign(0.231) TCGA-EE-A2M5-06 20 62339959 62339959 C T ZGPAT Silent p.A9A 0.51 TCGA-EE-A2M5-06 20 62626388 62626388 C T PRPF6 Silent p.F186F 0.42 TCGA-EE-A2M5-06 20 62729718 62729718 C T OPRL1 Missense_Mutation p.P227S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 20 8628581 8628581 G C PLCB1 Missense_Mutation p.G167R 0.45 deleterious(0.02) possibly_damaging(0.735) TCGA-EE-A2M5-06 20 8707959 8707959 G A PLCB1 Missense_Mutation p.R561K 0.17 tolerated(0.97) benign(0.079) TCGA-EE-A2M5-06 20 8770196 8770196 C T PLCB1 Nonsense_Mutation p.Q1104* 0.39 TCGA-EE-A2M5-06 21 10920091 10920091 G A TPTE Missense_Mutation p.P388L 0.12 deleterious(0) probably_damaging(0.948) TCGA-EE-A2M5-06 21 10951345 10951345 G A TPTE Missense_Mutation p.P123S 0.13 tolerated(0.18) benign(0.046) TCGA-EE-A2M5-06 21 11038962 11038962 C T BAGE2 RNA 0.04 TCGA-EE-A2M5-06 21 11039014 11039014 C T BAGE2 RNA 0.06 TCGA-EE-A2M5-06 21 15599409 15599409 C T RBM11 Missense_Mutation p.S214F 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.642) TCGA-EE-A2M5-06 21 17250673 17250673 C T USP25 Missense_Mutation p.S1016F 0.45 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 21 22838998 22838998 G A NCAM2 Missense_Mutation p.G576R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 21 30953850 30953850 C T GRIK1 Missense_Mutation p.E603K 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 21 31588124 31588124 G A CLDN8 Silent p.I40I 0.14 TCGA-EE-A2M5-06 21 31691929 31691929 G A KRTAP26-1 Missense_Mutation p.A142V 0.08 tolerated(0.18) benign(0.002) TCGA-EE-A2M5-06 21 31709695 31709695 T G KRTAP27-1 Missense_Mutation p.T98P 0.41 tolerated(0.19) benign(0.007) TCGA-EE-A2M5-06 21 31869219 31869219 C T KRTAP19-4 Silent p.T70T 0.35 TCGA-EE-A2M5-06 21 34003525 34003525 G A SYNJ1 Missense_Mutation p.S1540L 0.09 tolerated_low_confidence(0.07) benign(0.002) TCGA-EE-A2M5-06 21 34860693 34860693 T G DNAJC28 Missense_Mutation p.R336S 0.39 deleterious(0) possibly_damaging(0.616) TCGA-EE-A2M5-06 21 41301039 41301039 G A PCP4 3'UTR 0.25 TCGA-EE-A2M5-06 21 41668096 41668096 G A DSCAM Missense_Mutation p.P690S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 21 42080546 42080546 C T DSCAM Silent p.E65E 0.34 TCGA-EE-A2M5-06 21 43800270 43800270 C T TMPRSS3 Missense_Mutation p.G335E 0.33 tolerated(0.14) probably_damaging(0.956) TCGA-EE-A2M5-06 21 43896032 43896032 C T RSPH1 Missense_Mutation p.E285K 0.12 deleterious_low_confidence(0.01) benign(0.411) TCGA-EE-A2M5-06 21 44283681 44283681 G A WDR4 Silent p.L108L 0.29 TCGA-EE-A2M5-06 21 45483519 45483519 G A TRAPPC10 Silent p.Q297Q 0.09 TCGA-EE-A2M5-06 21 45733006 45733006 C T PFKL Silent p.A191A 0.51 TCGA-EE-A2M5-06 21 45948430 45948430 G A TSPEAR Missense_Mutation p.P276L 0.67 tolerated(0.11) benign(0.009) TCGA-EE-A2M5-06 21 45994564 45994564 C T KRTAP10-4 Missense_Mutation p.S310F 0.41 deleterious(0.04) unknown(0) TCGA-EE-A2M5-06 21 46047644 46047644 G C KRTAP10-9 Missense_Mutation p.V186L 0.10 tolerated(0.45) unknown(0) TCGA-EE-A2M5-06 21 47407549 47407549 G A COL6A1 Missense_Mutation p.R262Q 0.35 tolerated(0.59) unknown(0) TCGA-EE-A2M5-06 21 47744193 47744193 G A PCNT Silent p.T17T 0.38 TCGA-EE-A2M5-06 21 47817390 47817390 C T PCNT Silent p.N1476N 0.42 TCGA-EE-A2M5-06 22 16287502 16287502 C T POTEH Missense_Mutation p.M128I 0.21 deleterious_low_confidence(0.01) benign(0.043) TCGA-EE-A2M5-06 22 16449062 16449062 C T OR11H1 Missense_Mutation p.G248E 0.29 deleterious(0) probably_damaging(0.982) TCGA-EE-A2M5-06 22 17590263 17590263 C T IL17RA Silent p.F718F 0.37 TCGA-EE-A2M5-06 22 17600967 17600967 C T CECR6 Missense_Mutation p.G351S 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2M5-06 22 17600968 17600968 C T CECR6 Silent p.T350T 0.34 TCGA-EE-A2M5-06 22 18899146 18899146 C T DGCR6 Missense_Mutation p.P203S 0.24 tolerated_low_confidence(0.25) benign(0.003) TCGA-EE-A2M5-06 22 19026477 19026477 G A DGCR2 Silent p.L518L 0.28 TCGA-EE-A2M5-06 22 19707911 19707911 A G SEPT5 Missense_Mutation p.N144S 0.30 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M5-06 22 22599239 22599239 C T VPREB1 Missense_Mutation p.P5L 0.33 tolerated(0.07) benign(0.092) TCGA-EE-A2M5-06 22 24034183 24034183 A G RGL4 5'UTR 0.25 TCGA-EE-A2M5-06 22 25115385 25115385 A T PIWIL3 3'UTR 0.24 TCGA-EE-A2M5-06 22 26228958 26228958 C T MYO18B Silent p.P1018P 0.38 TCGA-EE-A2M5-06 22 26688398 26688398 C T SEZ6L Missense_Mutation p.P41S 0.21 tolerated_low_confidence(0.14) benign(0.01) TCGA-EE-A2M5-06 22 30079065 30079065 C T NF2 Intron 0.24 TCGA-EE-A2M5-06 22 30418657 30418657 C T MTMR3 Silent p.F1132F 0.26 TCGA-EE-A2M5-06 22 30973084 30973086 GTG TA PES1 Frame_Shift_Del p.H572* 0.16 TCGA-EE-A2M5-06 22 31328619 31328619 G A MORC2 Missense_Mutation p.S825F 0.45 deleterious(0) possibly_damaging(0.8) TCGA-EE-A2M5-06 22 31658189 31658189 C A LIMK2 Silent p.I186I 0.20 TCGA-EE-A2M5-06 22 32445970 32445970 T G SLC5A1 Missense_Mutation p.F59C 0.32 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M5-06 22 32498076 32498076 A G SLC5A1 Missense_Mutation p.Y506C 0.35 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2M5-06 22 36538010 36538010 C T APOL3 Silent p.R149R 0.33 TCGA-EE-A2M5-06 22 36587224 36587224 C T APOL4 Missense_Mutation p.A318T 0.41 deleterious(0) benign(0.375) TCGA-EE-A2M5-06 22 36700082 36700082 G A MYH9 Silent p.I783I 0.16 TCGA-EE-A2M5-06 22 37328826 37328826 C T CSF2RB Silent p.S344S 0.29 TCGA-EE-A2M5-06 22 37334022 37334022 G A CSF2RB Silent p.G724G 0.21 TCGA-EE-A2M5-06 22 37699361 37699361 G A CYTH4 Missense_Mutation p.R205Q 0.33 deleterious(0) benign(0.047) TCGA-EE-A2M5-06 22 37708142 37708142 G A CYTH4 Missense_Mutation p.E347K 0.26 deleterious(0.04) possibly_damaging(0.475) TCGA-EE-A2M5-06 22 37906369 37906369 C T CARD10 Silent p.R253R 0.48 TCGA-EE-A2M5-06 22 38120219 38120219 C T TRIOBP Silent p.S552S 0.08 TCGA-EE-A2M5-06 22 38212609 38212609 C T GCAT Missense_Mutation p.P408S 0.23 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A2M5-06 22 40030692 40030692 C T CACNA1I Silent p.L235L 0.30 TCGA-EE-A2M5-06 22 40056392 40056392 C T CACNA1I Missense_Mutation p.S883F 0.24 tolerated(0.18) possibly_damaging(0.485) TCGA-EE-A2M5-06 22 40139745 40139745 G A ENTHD1 Missense_Mutation p.S588L 0.31 tolerated(0.57) unknown(0) TCGA-EE-A2M5-06 22 40217006 40217006 G A ENTHD1 Missense_Mutation p.S275L 0.51 tolerated(0.29) benign(0) TCGA-EE-A2M5-06 22 40574088 40574088 C T TNRC6B 5'UTR 0.21 TCGA-EE-A2M5-06 22 41753189 41753189 A G ZC3H7B Missense_Mutation p.K897R 0.20 tolerated(0.08) benign(0.177) TCGA-EE-A2M5-06 22 42172208 42172208 C T MEI1 Nonsense_Mutation p.R883* 0.27 TCGA-EE-A2M5-06 22 43735192 43735192 G A SCUBE1 Silent p.I46I 0.27 TCGA-EE-A2M5-06 22 45958907 45958907 C T FBLN1 Intron 0.33 TCGA-EE-A2M5-06 22 45958920 45958920 C T FBLN1 Intron 0.34 TCGA-EE-A2M5-06 22 45996225 45996225 C T FBLN1 Missense_Mutation p.H671Y 0.31 tolerated(0.11) benign(0.403) TCGA-EE-A2M5-06 22 46611088 46611088 C T PPARA Missense_Mutation p.S76L 0.35 deleterious_low_confidence(0.01) benign(0.21) TCGA-EE-A2M5-06 22 46653792 46653792 C T PKDREJ Missense_Mutation p.E1810K 0.23 tolerated(1) benign(0.003) TCGA-EE-A2M5-06 22 46656462 46656462 C T PKDREJ Missense_Mutation p.D920N 0.38 tolerated(0.19) benign(0.008) TCGA-EE-A2M5-06 22 50297903 50297903 C T ALG12 Splice_Site p.X388_splice 0.25 TCGA-EE-A2M5-06 22 50598148 50598148 G A MOV10L1 Missense_Mutation p.M1086I 0.41 tolerated(0.19) benign(0.012) TCGA-EE-A2M5-06 22 50658792 50658792 G A TUBGCP6 Silent p.P1332P 0.23 TCGA-EE-A2M5-06 22 50706341 50706341 C T MAPK11 Missense_Mutation p.V52M 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 22 50720694 50720694 C T PLXNB2 Silent p.Q1012Q 0.37 TCGA-EE-A2M5-06 22 50926416 50926416 C T MIOX Silent p.F93F 0.35 TCGA-EE-A2M5-06 2 100050846 100050846 G A REV1 Silent p.N462N 0.33 TCGA-EE-A2M5-06 2 101192980 101192980 C T PDCL3 3'UTR 0.31 TCGA-EE-A2M5-06 2 101192981 101192981 C T PDCL3 3'UTR 0.28 TCGA-EE-A2M5-06 2 102849574 102849574 C T IL1RL2 Silent p.F429F 0.28 TCGA-EE-A2M5-06 2 102958733 102958733 G A IL1RL1 Missense_Mutation p.E221K 0.19 tolerated(0.21) benign(0.081) TCGA-EE-A2M5-06 2 102968169 102968169 G A IL1RL1 Missense_Mutation p.E487K 0.25 tolerated(0.61) benign(0.024) TCGA-EE-A2M5-06 2 103010932 103010932 G A IL18R1 Missense_Mutation p.G372E 0.38 deleterious(0) probably_damaging(0.951) TCGA-EE-A2M5-06 2 103148806 103148806 C T SLC9A4 Missense_Mutation p.P686S 0.26 tolerated(1) benign(0) TCGA-EE-A2M5-06 2 103149106 103149106 G A SLC9A4 Missense_Mutation p.D786N 0.22 tolerated_low_confidence(0.06) benign(0.016) TCGA-EE-A2M5-06 2 10583694 10583694 G A ODC1 Silent p.F196F 0.38 TCGA-EE-A2M5-06 2 105890114 105890114 C T TGFBRAP1 Missense_Mutation p.D567N 0.23 tolerated(0.34) benign(0.005) TCGA-EE-A2M5-06 2 107042457 107042457 G A RGPD3 Missense_Mutation p.P898L 0.12 deleterious(0) possibly_damaging(0.63) TCGA-EE-A2M5-06 2 107450519 107450519 T G ST6GAL2 Missense_Mutation p.I343L 0.30 probably_damaging(0.923) TCGA-EE-A2M5-06 2 108475875 108475875 T A RGPD4 Nonsense_Mutation p.L500* 0.18 TCGA-EE-A2M5-06 2 108488207 108488207 G A RGPD4 Nonsense_Mutation p.W1249* 0.29 TCGA-EE-A2M5-06 2 108999957 108999957 C T SULT1C4 Silent p.D202D 0.20 TCGA-EE-A2M5-06 2 11053984 11053984 C T KCNF1 Missense_Mutation p.P478S 0.30 tolerated_low_confidence(0.11) benign(0.115) TCGA-EE-A2M5-06 2 11332715 11332715 G A ROCK2 Missense_Mutation p.P1271S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 113535625 113535625 C T IL1A Missense_Mutation p.R185K 0.26 tolerated(0.22) benign(0.016) TCGA-EE-A2M5-06 2 113785619 113785619 C T IL36B Intron 0.22 TCGA-EE-A2M5-06 2 113785692 113785692 C T IL36B Intron 0.23 TCGA-EE-A2M5-06 2 113940066 113940066 C T PSD4 Silent p.P11P 0.15 TCGA-EE-A2M5-06 2 116510770 116510770 T - DPP10 Frame_Shift_Del p.K329Nfs*3 0.20 TCGA-EE-A2M5-06 2 116572408 116572408 C T DPP10 Silent p.F584F 0.17 TCGA-EE-A2M5-06 2 11802205 11802205 G A NTSR2 Silent p.L262L 0.25 TCGA-EE-A2M5-06 2 120003204 120003204 C T STEAP3 Silent p.A54A 0.29 TCGA-EE-A2M5-06 2 120404598 120404598 G A PCDP1 Missense_Mutation p.E764K 0.31 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A2M5-06 2 121047196 121047196 C T RALB Missense_Mutation p.P122S 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2M5-06 2 121047197 121047197 C T RALB Missense_Mutation p.P122L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 121747549 121747549 G A GLI2 Silent p.E1353E 0.24 TCGA-EE-A2M5-06 2 125192116 125192116 G A CNTNAP5 Silent p.Q195Q 0.28 TCGA-EE-A2M5-06 2 125521320 125521320 A C CNTNAP5 Missense_Mutation p.D768A 0.19 tolerated(0.19) benign(0.01) TCGA-EE-A2M5-06 2 125555860 125555860 T A CNTNAP5 Silent p.S1059S 0.28 TCGA-EE-A2M5-06 2 137814117 137814117 G A THSD7B Silent p.K89K 0.17 TCGA-EE-A2M5-06 2 137814593 137814593 G A THSD7B Nonsense_Mutation p.W248* 0.24 TCGA-EE-A2M5-06 2 137990490 137990490 G T THSD7B Missense_Mutation p.S646I 0.37 tolerated(0.1) possibly_damaging(0.607) TCGA-EE-A2M5-06 2 141032134 141032134 G A LRP1B Missense_Mutation p.S4334L 0.36 benign(0.307) TCGA-EE-A2M5-06 2 141232749 141232749 G A LRP1B Missense_Mutation p.H3195Y 0.30 benign(0.152) TCGA-EE-A2M5-06 2 141259324 141259324 T A LRP1B Missense_Mutation p.N2928Y 0.17 possibly_damaging(0.703) TCGA-EE-A2M5-06 2 141260627 141260627 C T LRP1B Missense_Mutation p.R2856Q 0.25 possibly_damaging(0.553) TCGA-EE-A2M5-06 2 141528474 141528474 G A LRP1B Nonsense_Mutation p.Q1868* 0.26 TCGA-EE-A2M5-06 2 144764854 144764854 G A GTDC1 Missense_Mutation p.S257F 0.41 tolerated_low_confidence(0.68) benign(0.003) TCGA-EE-A2M5-06 2 149806414 149806414 T C KIF5C Missense_Mutation p.L259S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 149837950 149837950 G A KIF5C Missense_Mutation p.D482N 0.31 tolerated(0.11) benign(0.142) TCGA-EE-A2M5-06 2 1520668 1520668 C T TPO Silent p.L844L 0.12 TCGA-EE-A2M5-06 2 152376255 152376255 C T NEB Missense_Mutation p.E7503K 0.21 benign(0.224) TCGA-EE-A2M5-06 2 152500996 152500996 C T NEB Missense_Mutation p.E2544K 0.43 possibly_damaging(0.601) TCGA-EE-A2M5-06 2 158178156 158178156 C T ERMN Missense_Mutation p.G174E 0.26 deleterious(0.02) possibly_damaging(0.857) TCGA-EE-A2M5-06 2 159672313 159672313 C T DAPL1 Nonsense_Mutation p.Q102* 0.33 TCGA-EE-A2M5-06 2 163236468 163236468 G A KCNH7 Missense_Mutation p.P1009L 0.28 tolerated(0.31) benign(0.009) TCGA-EE-A2M5-06 2 163250982 163250982 C T KCNH7 Missense_Mutation p.R876Q 0.23 tolerated(0.46) benign(0.018) TCGA-EE-A2M5-06 2 166229797 166229797 C T SCN2A Silent p.S1304S 0.26 TCGA-EE-A2M5-06 2 166229798 166229798 C T SCN2A Missense_Mutation p.L1305F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 166737216 166737216 A - TTC21B Frame_Shift_Del p.Y1260Ifs*9 0.13 TCGA-EE-A2M5-06 2 166848493 166848493 G A SCN1A Silent p.F1764F 0.20 TCGA-EE-A2M5-06 2 167056155 167056155 T C SCN9A Missense_Mutation p.N1654S 0.36 tolerated(0.15) benign(0.161) TCGA-EE-A2M5-06 2 167262858 167262858 A T SCN7A Silent p.L1427L 0.32 TCGA-EE-A2M5-06 2 167273338 167273338 G A SCN7A Missense_Mutation p.S1098L 0.30 tolerated(0.49) benign(0.002) TCGA-EE-A2M5-06 2 168104177 168104177 A T XIRP2 Missense_Mutation p.N2092I 0.33 benign(0.022) TCGA-EE-A2M5-06 2 168104646 168104646 G A XIRP2 Silent p.L2248L 0.22 TCGA-EE-A2M5-06 2 168115691 168115691 G A XIRP2 3'UTR 0.20 TCGA-EE-A2M5-06 2 1687478 1687478 A C PXDN Missense_Mutation p.I170M 0.30 deleterious(0.01) possibly_damaging(0.454) TCGA-EE-A2M5-06 2 169728044 169728044 A G SPC25 Missense_Mutation p.L191P 0.34 deleterious(0) probably_damaging(0.959) TCGA-EE-A2M5-06 2 170038101 170038101 G A LRP2 Silent p.H3342H 0.28 TCGA-EE-A2M5-06 2 170048483 170048483 C T LRP2 Missense_Mutation p.R2964K 0.35 benign(0.042) TCGA-EE-A2M5-06 2 174230214 174230214 C T CDCA7 Missense_Mutation p.S310L 0.42 tolerated(0.11) benign(0.015) TCGA-EE-A2M5-06 2 175301022 175301022 C T GPR155 Missense_Mutation p.G812E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 178081271 178081271 G A HNRNPA3 Silent p.V198V 0.31 TCGA-EE-A2M5-06 2 178346790 178346790 C T AGPS Missense_Mutation p.T370I 0.23 tolerated(0.07) benign(0.019) TCGA-EE-A2M5-06 2 178494270 178494270 C T PDE11A Silent p.V889V 0.31 TCGA-EE-A2M5-06 2 178769883 178769883 A G PDE11A Missense_Mutation p.I368T 0.26 deleterious(0) probably_damaging(0.954) TCGA-EE-A2M5-06 2 178988285 178988285 C T RBM45 Missense_Mutation p.A297V 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 2 179247813 179247813 C T OSBPL6 Missense_Mutation p.P587S 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2M5-06 2 179343284 179343284 C T FKBP7 5'UTR 0.40 TCGA-EE-A2M5-06 2 179404953 179404953 C T TTN Nonsense_Mutation p.W32647* 0.25 TCGA-EE-A2M5-06 2 179426563 179426563 G A TTN Missense_Mutation p.S28099F 0.28 TCGA-EE-A2M5-06 2 179427532 179427532 C T TTN Missense_Mutation p.R27776K 0.37 TCGA-EE-A2M5-06 2 179430748 179430748 C T TTN Nonsense_Mutation p.W26704* 0.38 TCGA-EE-A2M5-06 2 179434595 179434595 C T TTN Missense_Mutation p.V25422I 0.27 TCGA-EE-A2M5-06 2 179440668 179440668 A T TTN Missense_Mutation p.F23397L 0.33 TCGA-EE-A2M5-06 2 179442904 179442904 G A TTN Missense_Mutation p.L22780F 0.33 TCGA-EE-A2M5-06 2 179444256 179444256 G A TTN Intron 0.33 TCGA-EE-A2M5-06 2 179451886 179451886 G A TTN Missense_Mutation p.P21351L 0.26 TCGA-EE-A2M5-06 2 179458929 179458929 C T TTN Silent p.T19397T 0.33 TCGA-EE-A2M5-06 2 179473173 179473173 C T TTN Silent p.V17479V 0.32 TCGA-EE-A2M5-06 2 179478823 179478823 C T TTN Missense_Mutation p.G16434D 0.33 TCGA-EE-A2M5-06 2 179579889 179579889 G A TTN Missense_Mutation p.S8675F 0.21 TCGA-EE-A2M5-06 2 179585326 179585326 G A TTN Silent p.L7721L 0.37 TCGA-EE-A2M5-06 2 179600381 179600381 C T TTN Missense_Mutation p.G4931E 0.35 TCGA-EE-A2M5-06 2 179610611 179610611 C T TTN Intron 0.27 TCGA-EE-A2M5-06 2 179636057 179636057 C T TTN Missense_Mutation p.R2666K 0.29 TCGA-EE-A2M5-06 2 179639813 179639813 T C TTN Missense_Mutation p.K2209E 0.36 TCGA-EE-A2M5-06 2 179640461 179640461 C T TTN Missense_Mutation p.E2044K 0.28 TCGA-EE-A2M5-06 2 179641269 179641269 G A TTN Silent p.I1774I 0.28 TCGA-EE-A2M5-06 2 179641997 179641997 C A TTN Missense_Mutation p.V1565F 0.34 TCGA-EE-A2M5-06 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.23 TCGA-EE-A2M5-06 2 182543276 182543276 C T NEUROD1 Missense_Mutation p.M104I 0.26 tolerated(0.33) benign(0.029) TCGA-EE-A2M5-06 2 183104927 183104927 C T PDE1A Missense_Mutation p.R103Q 0.32 tolerated(0.17) probably_damaging(0.959) TCGA-EE-A2M5-06 2 183593635 183593635 G A DNAJC10 Missense_Mutation p.A183T 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 2 183601005 183601005 C T DNAJC10 Silent p.D293D 0.25 TCGA-EE-A2M5-06 2 183640123 183640123 C T DNAJC10 Silent p.L782L 0.15 TCGA-EE-A2M5-06 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.23 deleterious(0) probably_damaging(0.953) TCGA-EE-A2M5-06 2 186669973 186669973 A T FSIP2 Nonsense_Mutation p.K5403* 0.23 TCGA-EE-A2M5-06 2 186670004 186670004 A G FSIP2 Missense_Mutation p.K5413R 0.20 benign(0.001) TCGA-EE-A2M5-06 2 187370494 187370494 C T ZC3H15 Missense_Mutation p.R298C 0.41 deleterious(0.03) benign(0.015) TCGA-EE-A2M5-06 2 18768307 18768307 G A NT5C1B Missense_Mutation p.H85Y 0.26 tolerated_low_confidence(0.34) probably_damaging(0.993) TCGA-EE-A2M5-06 2 188216918 188216918 G A CALCRL Silent p.L351L 0.15 TCGA-EE-A2M5-06 2 189853340 189853340 C T COL3A1 Missense_Mutation p.P203S 0.24 unknown(0) TCGA-EE-A2M5-06 2 1926536 1926536 G A MYT1L Silent p.F335F 0.46 TCGA-EE-A2M5-06 2 192701210 192701210 C T SDPR Silent p.V239V 0.28 TCGA-EE-A2M5-06 2 197595583 197595583 G A CCDC150 Missense_Mutation p.E995K 0.53 tolerated(0.53) benign(0.011) TCGA-EE-A2M5-06 2 198650760 198650760 G A BOLL 5'UTR 0.19 TCGA-EE-A2M5-06 2 20463104 20463104 G A PUM2 Missense_Mutation p.P692L 0.23 deleterious(0) benign(0.268) TCGA-EE-A2M5-06 2 207583015 207583015 C T DYTN 5'UTR 0.29 TCGA-EE-A2M5-06 2 207631569 207631569 C T FASTKD2 Missense_Mutation p.P51L 0.24 tolerated(0.16) benign(0.004) TCGA-EE-A2M5-06 2 211527860 211527860 C T CPS1 Missense_Mutation p.S1320F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 2 21228679 21228679 G A APOB Silent p.F3687F 0.26 TCGA-EE-A2M5-06 2 21239410 21239410 C T APOB Missense_Mutation p.R1078K 0.31 probably_damaging(0.97) TCGA-EE-A2M5-06 2 212495282 212495282 A C ERBB4 Missense_Mutation p.F662V 0.24 tolerated(0.14) benign(0.119) TCGA-EE-A2M5-06 2 214228927 214228927 T A SPAG16 Intron 0.60 TCGA-EE-A2M5-06 2 214878736 214878736 C T SPAG16 Missense_Mutation p.P488S 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2M5-06 2 215872484 215872484 G A ABCA12 Silent p.F853F 0.33 TCGA-EE-A2M5-06 2 217297570 217297570 C T SMARCAL1 Silent p.S488S 0.34 TCGA-EE-A2M5-06 2 219561253 219561253 C T STK36 Missense_Mutation p.R839W 0.27 tolerated(0.19) possibly_damaging(0.677) TCGA-EE-A2M5-06 2 220027108 220027108 G A SLC23A3 Missense_Mutation p.P492S 0.39 tolerated(0.24) benign(0.019) TCGA-EE-A2M5-06 2 220027109 220027109 G A SLC23A3 Silent p.S491S 0.37 TCGA-EE-A2M5-06 2 220080739 220080739 G A ABCB6 Silent p.S378S 0.33 TCGA-EE-A2M5-06 2 220246092 220246092 G A DNPEP Nonsense_Mutation p.R402* 0.33 TCGA-EE-A2M5-06 2 220420938 220420938 C T OBSL1 Silent p.E1471E 0.41 TCGA-EE-A2M5-06 2 220421347 220421347 C T OBSL1 Missense_Mutation p.D1389N 0.39 tolerated(0.47) benign(0.024) TCGA-EE-A2M5-06 2 226446840 226446840 G A NYAP2 Missense_Mutation p.G236E 0.28 tolerated(0.86) benign(0.053) TCGA-EE-A2M5-06 2 227968696 227968696 C T COL4A4 Missense_Mutation p.G270R 0.31 probably_damaging(1) TCGA-EE-A2M5-06 2 228855764 228855764 C T SPHKAP Silent p.G1637G 0.19 TCGA-EE-A2M5-06 2 228882330 228882330 G A SPHKAP Silent p.A1080A 0.24 TCGA-EE-A2M5-06 2 228882856 228882856 C T SPHKAP Missense_Mutation p.G905E 0.42 deleterious(0.04) benign(0.216) TCGA-EE-A2M5-06 2 228883935 228883935 C A SPHKAP Missense_Mutation p.K545N 0.28 tolerated(0.12) benign(0.015) TCGA-EE-A2M5-06 2 228884203 228884203 G A SPHKAP Missense_Mutation p.P456L 0.32 deleterious(0) probably_damaging(0.984) TCGA-EE-A2M5-06 2 231936974 231936974 C T PSMD1 Silent p.L242L 0.30 TCGA-EE-A2M5-06 2 231937110 231937110 C T PSMD1 Missense_Mutation p.P288S 0.30 tolerated(0.25) benign(0) TCGA-EE-A2M5-06 2 232030645 232030645 T G PSMD1 Missense_Mutation p.L877V 0.40 tolerated(0.44) benign(0.002) TCGA-EE-A2M5-06 2 234217864 234217864 C T SAG Missense_Mutation p.S10F 0.18 deleterious(0.01) benign(0.418) TCGA-EE-A2M5-06 2 234628150 234628150 T C UGT1A4 Silent p.S228S 0.38 TCGA-EE-A2M5-06 2 234652190 234652190 C T UGT1A10 Intron 0.30 TCGA-EE-A2M5-06 2 234775127 234775127 G A MSL3P1 RNA 0.36 TCGA-EE-A2M5-06 2 238249377 238249377 C T COL6A3 Missense_Mutation p.E2728K 0.31 unknown(0) TCGA-EE-A2M5-06 2 238280629 238280629 G A COL6A3 Missense_Mutation p.S1344L 0.34 benign(0.167) TCGA-EE-A2M5-06 2 240968886 240968886 T C OR6B2 3'UTR 0.24 TCGA-EE-A2M5-06 2 241078603 241078603 G A OTOS Missense_Mutation p.P85L 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 2 241514528 241514528 G A RNPEPL1 Missense_Mutation p.G226E 0.31 deleterious(0.04) benign(0.142) TCGA-EE-A2M5-06 2 241537768 241537768 G A CAPN10 Splice_Site p.X648_splice 0.18 TCGA-EE-A2M5-06 2 242523971 242523971 C T THAP4 3'UTR 0.28 TCGA-EE-A2M5-06 2 24428097 24428097 G A ITSN2 Missense_Mutation p.A1583V 0.37 deleterious(0.03) unknown(0) TCGA-EE-A2M5-06 2 25972977 25972977 G A ASXL2 Missense_Mutation p.P483L 0.34 deleterious(0.04) benign(0.094) TCGA-EE-A2M5-06 2 26587215 26587215 C T EPT1 Missense_Mutation p.P35S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 2 27150136 27150136 G A DPYSL5 Missense_Mutation p.E146K 0.32 tolerated(0.24) probably_damaging(0.987) TCGA-EE-A2M5-06 2 272128 272128 C T ACP1 Intron 0.26 TCGA-EE-A2M5-06 2 27351330 27351330 C T ABHD1 Missense_Mutation p.P46S 0.24 tolerated(0.95) benign(0.004) TCGA-EE-A2M5-06 2 27676933 27676933 C T IFT172 Silent p.G1209G 0.27 TCGA-EE-A2M5-06 2 27720498 27720498 G A GCKR Splice_Site p.X95_splice 0.21 TCGA-EE-A2M5-06 2 29259574 29259574 G A FAM179A Silent p.G862G 0.22 TCGA-EE-A2M5-06 2 29462661 29462661 C T ALK Missense_Mutation p.G747E 0.28 deleterious(0) probably_damaging(0.946) TCGA-EE-A2M5-06 2 30998846 30998846 G A CAPN13 Silent p.L113L 0.16 TCGA-EE-A2M5-06 2 30998847 30998847 G A CAPN13 Silent p.I112I 0.16 TCGA-EE-A2M5-06 2 31602819 31602819 C T XDH Missense_Mutation p.D386N 0.36 tolerated(0.57) possibly_damaging(0.539) TCGA-EE-A2M5-06 2 31754504 31754504 C T AL133247.2 Intron 0.19 TCGA-EE-A2M5-06 2 32640055 32640055 T A BIRC6 Missense_Mutation p.C566S 0.20 probably_damaging(0.977) TCGA-EE-A2M5-06 2 32740464 32740464 T A BIRC6 Missense_Mutation p.I3659N 0.38 benign(0) TCGA-EE-A2M5-06 2 36774301 36774301 G A CRIM1 Missense_Mutation p.R974Q 0.29 tolerated(0.06) benign(0.005) TCGA-EE-A2M5-06 2 37028483 37028483 G A VIT Silent p.T366T 0.24 TCGA-EE-A2M5-06 2 37215935 37215935 G A HEATR5B Missense_Mutation p.P1922L 0.29 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2M5-06 2 39213170 39213170 G A SOS1 Missense_Mutation p.P1266L 0.32 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A2M5-06 2 39931256 39931256 T A TMEM178A Missense_Mutation p.F146I 0.25 deleterious(0) possibly_damaging(0.888) TCGA-EE-A2M5-06 2 48573700 48573700 C T FOXN2 Missense_Mutation p.S116F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 2 50318477 50318477 G A NRXN1 Silent p.I1274I 0.28 TCGA-EE-A2M5-06 2 54024892 54024892 C T ERLEC1 Silent p.Y150Y 0.33 TCGA-EE-A2M5-06 2 62449926 62449926 C T B3GNT2 Missense_Mutation p.H191Y 0.37 tolerated(0.89) benign(0.008) TCGA-EE-A2M5-06 2 63282651 63282651 C T OTX1 Missense_Mutation p.R89C 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 2 68368839 68368839 C T WDR92 Nonsense_Mutation p.W168* 0.21 TCGA-EE-A2M5-06 2 68368840 68368840 C T WDR92 Nonsense_Mutation p.W168* 0.21 TCGA-EE-A2M5-06 2 68384813 68384813 C T WDR92 5'Flank 0.17 TCGA-EE-A2M5-06 2 69049501 69049501 C T ARHGAP25 Silent p.T410T 0.24 TCGA-EE-A2M5-06 2 69759215 69759215 G A AAK1 Missense_Mutation p.P205L 0.19 deleterious(0.01) unknown(0) TCGA-EE-A2M5-06 2 70188388 70188388 C T ASPRV1 Missense_Mutation p.E145K 0.29 tolerated(0.18) benign(0.001) TCGA-EE-A2M5-06 2 70904014 70904014 G A ADD2 Nonsense_Mutation p.R503* 0.25 TCGA-EE-A2M5-06 2 71791313 71791313 T A DYSF Missense_Mutation p.N845K 0.24 tolerated(0.27) benign(0.006) TCGA-EE-A2M5-06 2 71825746 71825746 G A DYSF Silent p.V1209V 0.46 TCGA-EE-A2M5-06 2 74274350 74274350 G A TET3 Missense_Mutation p.A301T 0.34 tolerated(0.37) benign(0.001) TCGA-EE-A2M5-06 2 74593972 74593972 G A DCTN1 Nonsense_Mutation p.R802* 0.24 TCGA-EE-A2M5-06 2 74593973 74593973 G A DCTN1 Silent p.I801I 0.25 TCGA-EE-A2M5-06 2 74710315 74710315 C T CCDC142 5'Flank 0.35 TCGA-EE-A2M5-06 2 74733311 74733311 C T PCGF1 Missense_Mutation p.E141K 0.25 tolerated(0.2) benign(0.024) TCGA-EE-A2M5-06 2 74733312 74733312 C T PCGF1 Silent p.G140G 0.25 TCGA-EE-A2M5-06 2 74743288 74743288 C T TLX2 Missense_Mutation p.S276L 0.20 deleterious(0.02) benign(0.269) TCGA-EE-A2M5-06 2 74834279 74834279 G A M1AP Silent p.D166D 0.34 TCGA-EE-A2M5-06 2 95540644 95540644 G A TEKT4 Silent p.E279E 0.16 TCGA-EE-A2M5-06 2 96919742 96919742 G A TMEM127 Missense_Mutation p.A174V 0.31 tolerated(0.06) possibly_damaging(0.828) TCGA-EE-A2M5-06 2 97217625 97217625 C T ARID5A Missense_Mutation p.H454Y 0.27 tolerated(0.27) benign(0.003) TCGA-EE-A2M5-06 2 97369995 97369995 A T LMAN2L 3'Flank 0.25 TCGA-EE-A2M5-06 2 98175306 98175306 G A ANKRD36B RNA 0.23 TCGA-EE-A2M5-06 2 98804492 98804492 C T VWA3B Missense_Mutation p.P456S 0.33 tolerated(0.39) benign(0.206) TCGA-EE-A2M5-06 2 99439606 99439606 G A KIAA1211L Missense_Mutation p.P377L 0.53 tolerated(0.5) possibly_damaging(0.851) TCGA-EE-A2M5-06 3 101066822 101066822 A T SENP7 Missense_Mutation p.D577E 0.28 tolerated(0.09) benign(0.033) TCGA-EE-A2M5-06 3 108129643 108129643 G A MYH15 Missense_Mutation p.R1448C 0.31 deleterious(0.03) benign(0.04) TCGA-EE-A2M5-06 3 108723946 108723946 C T MORC1 Missense_Mutation p.E662K 0.29 tolerated(0.11) benign(0.219) TCGA-EE-A2M5-06 3 111795758 111795758 G A TMPRSS7 Missense_Mutation p.G538E 0.29 tolerated(0.09) possibly_damaging(0.657) TCGA-EE-A2M5-06 3 111923141 111923141 T C SLC9C1 Missense_Mutation p.K699R 0.32 tolerated(0.46) benign(0.07) TCGA-EE-A2M5-06 3 111988878 111988878 G A SLC9C1 Silent p.F220F 0.25 TCGA-EE-A2M5-06 3 11301359 11301359 G A HRH1 Silent p.K212K 0.67 TCGA-EE-A2M5-06 3 113098242 113098242 C G WDR52 Missense_Mutation p.E737Q 0.38 deleterious(0.01) benign(0.119) TCGA-EE-A2M5-06 3 113508623 113508623 G A ATP6V1A Silent p.R308R 0.23 TCGA-EE-A2M5-06 3 119666176 119666176 C T GSK3B Missense_Mutation p.R102K 0.32 tolerated(0.1) benign(0.148) TCGA-EE-A2M5-06 3 120924811 120924811 C T STXBP5L Missense_Mutation p.P307S 0.29 deleterious(0.04) probably_damaging(1) TCGA-EE-A2M5-06 3 120957858 120957858 G A STXBP5L Missense_Mutation p.E409K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 3 121126203 121126203 A T STXBP5L Missense_Mutation p.N925Y 0.31 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A2M5-06 3 121575903 121575903 A G EAF2 Silent p.Q128Q 0.28 TCGA-EE-A2M5-06 3 121825191 121825191 G A CD86 Missense_Mutation p.D183N 0.43 tolerated(0.14) possibly_damaging(0.566) TCGA-EE-A2M5-06 3 122632266 122632266 G A SEMA5B Silent p.F816F 0.31 TCGA-EE-A2M5-06 3 122849384 122849384 C T PDIA5 Silent p.S277S 0.32 TCGA-EE-A2M5-06 3 123071390 123071390 G A ADCY5 Silent p.I391I 0.37 TCGA-EE-A2M5-06 3 123666084 123666084 G A CCDC14 Missense_Mutation p.S263L 0.28 deleterious(0.04) possibly_damaging(0.765) TCGA-EE-A2M5-06 3 124689556 124689556 G A HEG1 Silent p.F1362F 0.24 TCGA-EE-A2M5-06 3 124689557 124689557 A C HEG1 Missense_Mutation p.F1362C 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2M5-06 3 124826485 124826485 G A SLC12A8 Silent p.F515F 0.38 TCGA-EE-A2M5-06 3 126218907 126218907 C T UROC1 Silent p.Q472Q 0.31 TCGA-EE-A2M5-06 3 129290066 129290066 G A PLXND1 Silent p.F1139F 0.41 TCGA-EE-A2M5-06 3 132185203 132185203 C T DNAJC13 Missense_Mutation p.R677W 0.28 tolerated(0.08) possibly_damaging(0.899) TCGA-EE-A2M5-06 3 133099807 133099807 C T TMEM108 Missense_Mutation p.L418F 0.23 tolerated(0.1) benign(0.027) TCGA-EE-A2M5-06 3 133191377 133191377 C T BFSP2 Silent p.S404S 0.31 TCGA-EE-A2M5-06 3 134322418 134322418 C G KY 3'UTR 0.29 TCGA-EE-A2M5-06 3 134322757 134322757 G A KY Silent p.F550F 0.37 TCGA-EE-A2M5-06 3 134327570 134327570 C T KY Silent p.E337E 0.29 TCGA-EE-A2M5-06 3 136152423 136152423 G A STAG1 Missense_Mutation p.P542L 0.27 deleterious(0) benign(0.06) TCGA-EE-A2M5-06 3 137717741 137717741 T C CLDN18 Missense_Mutation p.F11L 0.23 deleterious(0.04) benign(0.045) TCGA-EE-A2M5-06 3 139297761 139297761 A C NMNAT3 Silent p.P45P 0.28 TCGA-EE-A2M5-06 3 140167509 140167509 G A CLSTN2 Silent p.R312R 0.28 TCGA-EE-A2M5-06 3 140281652 140281652 G A CLSTN2 Splice_Site p.X738_splice 0.37 TCGA-EE-A2M5-06 3 142253975 142253975 C T ATR Missense_Mutation p.D1298N 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 3 143186016 143186016 G A SLC9A9 Silent p.I444I 0.26 TCGA-EE-A2M5-06 3 150264724 150264724 C T SERP1 5'UTR 0.24 TCGA-EE-A2M5-06 3 150911295 150911295 G A MED12L Missense_Mutation p.G663R 0.31 tolerated(0.23) possibly_damaging(0.503) TCGA-EE-A2M5-06 3 151012615 151012615 T A GPR87 Missense_Mutation p.Y140F 0.33 tolerated(0.2) probably_damaging(0.998) TCGA-EE-A2M5-06 3 151017977 151017977 G A GPR87 5'UTR 0.21 TCGA-EE-A2M5-06 3 152880782 152880782 C T RAP2B Silent p.I100I 0.26 TCGA-EE-A2M5-06 3 154001041 154001041 C T DHX36 Missense_Mutation p.R771Q 0.34 tolerated(0.27) benign(0.004) TCGA-EE-A2M5-06 3 154055947 154055947 C T GPR149 Silent p.G579G 0.34 TCGA-EE-A2M5-06 3 158376776 158376776 C T GFM1 Silent p.T383T 0.32 TCGA-EE-A2M5-06 3 164906436 164906436 G A SLITRK3 Missense_Mutation p.S728F 0.24 deleterious(0.01) benign(0.037) TCGA-EE-A2M5-06 3 167159919 167159919 C T SERPINI2 Missense_Mutation p.G399E 0.28 deleterious(0.02) benign(0.175) TCGA-EE-A2M5-06 3 169664194 169664194 C T RP11-379K17.4 RNA 0.45 TCGA-EE-A2M5-06 3 17226675 17226675 G A TBC1D5 Missense_Mutation p.S615F 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 3 172834923 172834923 C T SPATA16 Missense_Mutation p.R200K 0.31 tolerated(0.08) benign(0.14) TCGA-EE-A2M5-06 3 175520845 175520845 G A NAALADL2 Missense_Mutation p.E748K 0.29 deleterious(0.02) benign(0.017) TCGA-EE-A2M5-06 3 180378435 180378435 A G CCDC39 Silent p.L147L 0.44 TCGA-EE-A2M5-06 3 182897933 182897933 C T MCF2L2 Missense_Mutation p.E1011K 0.37 tolerated(0.14) benign(0.009) TCGA-EE-A2M5-06 3 185823275 185823275 C T ETV5 Silent p.Q48Q 0.34 TCGA-EE-A2M5-06 3 185882754 185882754 C T DGKG Missense_Mutation p.G717R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 3 186370176 186370176 G A FETUB Missense_Mutation p.G302E 0.24 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 3 186370277 186370277 G A FETUB Missense_Mutation p.G336R 0.29 deleterious(0.05) possibly_damaging(0.875) TCGA-EE-A2M5-06 3 186370278 186370278 G A FETUB Missense_Mutation p.G336E 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A2M5-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.28 deleterious(0.05) benign(0.012) TCGA-EE-A2M5-06 3 189612338 189612338 C T TP63 3'UTR 0.38 TCGA-EE-A2M5-06 3 190127728 190127728 G A CLDN16 Missense_Mutation p.R274K 0.28 tolerated(0.05) benign(0.445) TCGA-EE-A2M5-06 3 191178966 191178966 A T PYDC2 Silent p.A5A 0.20 TCGA-EE-A2M5-06 3 192993015 192993015 C T ATP13A5 Missense_Mutation p.R1158K 0.37 tolerated(0.46) benign(0.015) TCGA-EE-A2M5-06 3 193007718 193007718 G A ATP13A5 Silent p.L993L 0.29 TCGA-EE-A2M5-06 3 193071934 193071934 C T ATP13A5 Nonsense_Mutation p.W196* 0.31 TCGA-EE-A2M5-06 3 195609174 195609174 G A TNK2 Missense_Mutation p.S275L 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 3 195779012 195779012 G A TFRC Missense_Mutation p.S695F 0.37 tolerated(0.43) benign(0.044) TCGA-EE-A2M5-06 3 195794506 195794506 G A TFRC Missense_Mutation p.P308L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 3 196612362 196612362 T C SENP5 Missense_Mutation p.F104L 0.32 tolerated_low_confidence(0.38) benign(0.006) TCGA-EE-A2M5-06 3 19940269 19940269 C T EFHB Splice_Site p.X524_splice 0.45 TCGA-EE-A2M5-06 3 35729359 35729359 C T ARPP21 Silent p.I130I 0.22 TCGA-EE-A2M5-06 3 35732379 35732379 C T ARPP21 Nonsense_Mutation p.Q190* 0.38 TCGA-EE-A2M5-06 3 36779922 36779922 C T DCLK3 Missense_Mutation p.G77R 0.32 deleterious(0.01) benign(0.073) TCGA-EE-A2M5-06 3 38748845 38748845 C T SCN10A Silent p.E1437E 0.37 TCGA-EE-A2M5-06 3 3887440 3887440 C T LRRN1 Missense_Mutation p.P372L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 3 38888977 38888977 G A SCN11A Silent p.I1528I 0.67 TCGA-EE-A2M5-06 3 38889074 38889074 G A SCN11A Missense_Mutation p.S1496F 0.60 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 3 39186737 39186737 G A CSRNP1 Silent p.I72I 0.71 TCGA-EE-A2M5-06 3 41942258 41942258 C T ULK4 Missense_Mutation p.D416N 0.62 deleterious(0.03) possibly_damaging(0.821) TCGA-EE-A2M5-06 3 41949419 41949419 G A ULK4 Missense_Mutation p.P367L 0.39 deleterious(0.03) benign(0.088) TCGA-EE-A2M5-06 3 44488591 44488591 G A ZNF445 Missense_Mutation p.H858Y 0.32 deleterious(0) benign(0.415) TCGA-EE-A2M5-06 3 45000623 45000623 G A ZDHHC3 Silent p.P102P 0.41 TCGA-EE-A2M5-06 3 45152295 45152295 A G CDCP1 Missense_Mutation p.S232P 0.64 tolerated(0.07) benign(0.023) TCGA-EE-A2M5-06 3 45877241 45877241 G A LZTFL1 Missense_Mutation p.S55F 0.67 deleterious(0.04) benign(0.007) TCGA-EE-A2M5-06 3 45936407 45936407 T G CCR9 5'UTR 0.30 TCGA-EE-A2M5-06 3 47042835 47042835 C T NBEAL2 Silent p.A1517A 0.32 TCGA-EE-A2M5-06 3 48461036 48461036 G A PLXNB1 Missense_Mutation p.L887F 0.21 tolerated(0.17) probably_damaging(0.972) TCGA-EE-A2M5-06 3 48620846 48620846 G A COL7A1 Missense_Mutation p.P1473S 0.62 unknown(0) TCGA-EE-A2M5-06 3 49136965 49136965 G A QARS Missense_Mutation p.L502F 0.25 deleterious(0) probably_damaging(0.988) TCGA-EE-A2M5-06 3 49154225 49154225 G A USP19 Missense_Mutation p.P354L 0.40 tolerated_low_confidence(0.16) benign(0.005) TCGA-EE-A2M5-06 3 49154226 49154226 G A USP19 Missense_Mutation p.P354S 0.41 tolerated_low_confidence(0.55) benign(0.004) TCGA-EE-A2M5-06 3 49212568 49212568 G A KLHDC8B Silent p.G280G 0.26 TCGA-EE-A2M5-06 3 49455266 49455266 C T AMT Missense_Mutation p.E340K 0.28 tolerated(0.22) benign(0.011) TCGA-EE-A2M5-06 3 49756613 49756613 C T AMIGO3 Missense_Mutation p.E96K 0.62 tolerated(0.3) benign(0.003) TCGA-EE-A2M5-06 3 49898378 49898378 G A CAMKV Silent p.I212I 0.70 TCGA-EE-A2M5-06 3 50147119 50147119 C T RBM5 Missense_Mutation p.P426S 0.74 tolerated(0.22) benign(0.005) TCGA-EE-A2M5-06 3 51101926 51101926 A G DOCK3 Silent p.E121E 0.64 TCGA-EE-A2M5-06 3 51198015 51198015 G A DOCK3 Missense_Mutation p.G307S 0.48 tolerated(0.14) benign(0.21) TCGA-EE-A2M5-06 3 51297746 51297746 C T DOCK3 Missense_Mutation p.L782F 0.80 deleterious(0.04) benign(0.145) TCGA-EE-A2M5-06 3 51429941 51429941 C T RBM15B Missense_Mutation p.P371S 0.81 deleterious(0.01) possibly_damaging(0.505) TCGA-EE-A2M5-06 3 51429942 51429942 C T RBM15B Missense_Mutation p.P371L 0.79 deleterious(0) possibly_damaging(0.78) TCGA-EE-A2M5-06 3 52324538 52324538 C T GLYCTK Silent p.S60S 0.46 TCGA-EE-A2M5-06 3 52394075 52394075 C T DNAH1 Silent p.F1517F 0.23 TCGA-EE-A2M5-06 3 52475648 52475648 G A SEMA3G Silent p.F203F 0.58 TCGA-EE-A2M5-06 3 52475701 52475701 C T SEMA3G Missense_Mutation p.E186K 0.39 deleterious(0) possibly_damaging(0.72) TCGA-EE-A2M5-06 3 52538152 52538152 G A STAB1 Silent p.R377R 0.78 TCGA-EE-A2M5-06 3 52721594 52721594 C T GNL3 Missense_Mutation p.P96L 0.36 tolerated(0.26) benign(0.003) TCGA-EE-A2M5-06 3 53381598 53381598 G A DCP1A 5'UTR 0.71 TCGA-EE-A2M5-06 3 53842732 53842732 G A CACNA1D Missense_Mutation p.E1956K 0.58 tolerated_low_confidence(0.08) benign(0.154) TCGA-EE-A2M5-06 3 54798247 54798247 T A CACNA2D3 Missense_Mutation p.F417I 0.59 deleterious(0) benign(0.331) TCGA-EE-A2M5-06 3 54952851 54952851 G A LRTM1 Missense_Mutation p.P225S 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 3 56330372 56330372 C T ERC2 Missense_Mutation p.G250E 0.67 deleterious(0.02) possibly_damaging(0.827) TCGA-EE-A2M5-06 3 56468381 56468381 G A ERC2 Nonsense_Mutation p.Q219* 0.30 TCGA-EE-A2M5-06 3 56468947 56468947 C T ERC2 Missense_Mutation p.R30Q 0.40 deleterious(0.02) probably_damaging(0.945) TCGA-EE-A2M5-06 3 58870409 58870409 C T C3orf67 Missense_Mutation p.D68N 0.61 tolerated(0.37) benign(0.093) TCGA-EE-A2M5-06 3 59738022 59738022 A T FHIT Missense_Mutation p.F125Y 0.62 deleterious(0.05) benign(0.001) TCGA-EE-A2M5-06 3 65376990 65376990 C T MAGI1 Missense_Mutation p.S748N 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2M5-06 3 65415681 65415681 C T MAGI1 Missense_Mutation p.D561N 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2M5-06 3 65479241 65479241 C T MAGI1 Missense_Mutation p.E166K 0.64 deleterious(0.05) benign(0.051) TCGA-EE-A2M5-06 3 66460624 66460624 G A LRIG1 Silent p.L288L 0.59 TCGA-EE-A2M5-06 3 67054579 67054579 A C KBTBD8 Silent p.G396G 0.55 TCGA-EE-A2M5-06 3 74351883 74351883 C T CNTN3 Missense_Mutation p.G582R 0.59 tolerated(0.35) benign(0.005) TCGA-EE-A2M5-06 3 74351884 74351884 C A CNTN3 Silent p.T581T 0.63 TCGA-EE-A2M5-06 3 77612436 77612436 C T ROBO2 Silent p.T562T 0.23 TCGA-EE-A2M5-06 3 85961660 85961660 C T CADM2 Missense_Mutation p.P216S 0.53 tolerated(0.34) benign(0.142) TCGA-EE-A2M5-06 3 8787562 8787562 G A CAV3 3'UTR 0.68 TCGA-EE-A2M5-06 3 9052055 9052055 C T SRGAP3 Missense_Mutation p.E722K 0.53 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2M5-06 3 9506428 9506428 A T SETD5 Intron 0.60 TCGA-EE-A2M5-06 3 95374304 95374304 C T MTHFD2P1 RNA 0.25 TCGA-EE-A2M5-06 3 96706243 96706243 G A EPHA6 Missense_Mutation p.E174K 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2M5-06 3 9719716 9719716 C T MTMR14 Silent p.L291L 0.54 TCGA-EE-A2M5-06 3 97251309 97251309 G A EPHA6 Missense_Mutation p.D770N 0.28 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2M5-06 3 97888442 97888442 C T OR5H15 Missense_Mutation p.S300L 0.22 deleterious(0.05) possibly_damaging(0.589) TCGA-EE-A2M5-06 3 9802388 9802388 C T CAMK1 Missense_Mutation p.A233T 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 3 9802389 9802389 C T CAMK1 Silent p.K232K 0.33 TCGA-EE-A2M5-06 4 100129951 100129951 C T ADH6 Silent p.Q234Q 0.28 TCGA-EE-A2M5-06 4 100140321 100140321 C T ADH6 5'UTR 0.45 TCGA-EE-A2M5-06 4 100229018 100229018 G T ADH1B Silent p.I369I 0.20 TCGA-EE-A2M5-06 4 1018175 1018175 C T FGFRL1 Silent p.S265S 0.38 TCGA-EE-A2M5-06 4 103459029 103459029 C T NFKB1 Silent p.F58F 0.19 TCGA-EE-A2M5-06 4 104080310 104080310 G C CENPE Missense_Mutation p.Q820E 0.32 probably_damaging(0.993) TCGA-EE-A2M5-06 4 10447215 10447215 G A ZNF518B Silent p.S246S 0.35 TCGA-EE-A2M5-06 4 110932359 110932359 G A EGF Silent p.G1124G 0.33 TCGA-EE-A2M5-06 4 114264272 114264272 G A ANK2 Missense_Mutation p.E1408K 0.20 probably_damaging(0.999) TCGA-EE-A2M5-06 4 119665155 119665155 G T SEC24D Nonsense_Mutation p.Y661* 0.36 TCGA-EE-A2M5-06 4 121958041 121958041 A C NDNF Missense_Mutation p.F362C 0.35 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A2M5-06 4 123277108 123277108 C T KIAA1109 Silent p.S4821S 0.35 TCGA-EE-A2M5-06 4 123855400 123855400 C T SPATA5 Silent p.A218A 0.34 TCGA-EE-A2M5-06 4 128564854 128564854 C T INTU Missense_Mutation p.P109S 0.40 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A2M5-06 4 138442299 138442299 C T PCDH18 Missense_Mutation p.E1098K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2M5-06 4 138451129 138451129 G A PCDH18 Missense_Mutation p.S705F 0.17 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2M5-06 4 138452154 138452154 T A PCDH18 Missense_Mutation p.K363N 0.34 tolerated(0.58) benign(0.005) TCGA-EE-A2M5-06 4 138453173 138453173 C T PCDH18 Missense_Mutation p.D24N 0.40 tolerated(0.46) benign(0) TCGA-EE-A2M5-06 4 141789391 141789391 C T RNF150 3'UTR 0.29 TCGA-EE-A2M5-06 4 141889002 141889002 C T RNF150 Missense_Mutation p.M170I 0.31 deleterious(0) probably_damaging(0.968) TCGA-EE-A2M5-06 4 144922363 144922363 C T GYPB Silent p.K37K 0.13 TCGA-EE-A2M5-06 4 146824293 146824293 G A ZNF827 Missense_Mutation p.P40S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 4 149356726 149356726 T C NR3C2 Silent p.Q429Q 0.43 TCGA-EE-A2M5-06 4 155155969 155155969 G A DCHS2 Missense_Mutation p.P2824S 0.26 deleterious(0) probably_damaging(0.965) TCGA-EE-A2M5-06 4 155155970 155155970 G A DCHS2 Silent p.P2823P 0.25 TCGA-EE-A2M5-06 4 155156309 155156309 C T DCHS2 Silent p.G2710G 0.23 TCGA-EE-A2M5-06 4 155718035 155718035 A T RBM46 Missense_Mutation p.K44I 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2M5-06 4 156651206 156651206 C T GUCY1A3 Silent p.F632F 0.17 TCGA-EE-A2M5-06 4 158224878 158224878 C T GRIA2 Missense_Mutation p.A135V 0.17 deleterious(0) possibly_damaging(0.627) TCGA-EE-A2M5-06 4 162402309 162402309 G A FSTL5 Missense_Mutation p.P491S 0.15 deleterious(0.05) probably_damaging(0.986) TCGA-EE-A2M5-06 4 162841791 162841791 C T FSTL5 Silent p.Q58Q 0.18 TCGA-EE-A2M5-06 4 166405617 166405617 C T CPE Silent p.F278F 0.35 TCGA-EE-A2M5-06 4 166924680 166924680 G A TLL1 Missense_Mutation p.R257Q 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 4 167655943 167655943 C T SPOCK3 3'UTR 0.14 TCGA-EE-A2M5-06 4 167810364 167810364 C T SPOCK3 Missense_Mutation p.G172E 0.18 tolerated(0.08) benign(0.424) TCGA-EE-A2M5-06 4 169167646 169167646 G A DDX60 Missense_Mutation p.P1363S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 4 169173784 169173784 G A DDX60 Missense_Mutation p.T1194I 0.17 tolerated(0.1) benign(0.028) TCGA-EE-A2M5-06 4 171009684 171009684 C T AADAT Missense_Mutation p.M33I 0.35 tolerated(0.2) benign(0.003) TCGA-EE-A2M5-06 4 173930333 173930333 G A GALNTL6 Missense_Mutation p.R459Q 0.25 tolerated(0.37) benign(0.037) TCGA-EE-A2M5-06 4 175897017 175897017 T A ADAM29 Missense_Mutation p.V114D 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 4 183600818 183600818 G A TENM3 Splice_Site p.X443_splice 0.29 TCGA-EE-A2M5-06 4 183600819 183600819 T A TENM3 Missense_Mutation p.Y443N 0.29 deleterious(0) possibly_damaging(0.86) TCGA-EE-A2M5-06 4 183714622 183714622 C T TENM3 Missense_Mutation p.S2266L 0.17 deleterious(0) possibly_damaging(0.602) TCGA-EE-A2M5-06 4 186381105 186381105 C A CCDC110 Missense_Mutation p.M212I 0.46 tolerated(0.54) benign(0.008) TCGA-EE-A2M5-06 4 187205281 187205281 G A F11 Missense_Mutation p.G391R 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 4 187517822 187517822 G A FAT1 Missense_Mutation p.S4291F 0.46 possibly_damaging(0.779) TCGA-EE-A2M5-06 4 22749697 22749697 A G GBA3 Silent p.K355K 0.44 TCGA-EE-A2M5-06 4 3148568 3148568 C T HTT Missense_Mutation p.T1063I 0.19 benign(0.022) TCGA-EE-A2M5-06 4 3418713 3418713 C T RGS12 Missense_Mutation p.A834V 0.16 deleterious(0) benign(0.296) TCGA-EE-A2M5-06 4 38016171 38016171 C T TBC1D1 Silent p.I153I 0.17 TCGA-EE-A2M5-06 4 38798250 38798250 G A TLR1 Missense_Mutation p.P735S 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2M5-06 4 40427944 40427944 G A RBM47 Missense_Mutation p.P587S 0.25 tolerated_low_confidence(0.23) benign(0.034) TCGA-EE-A2M5-06 4 41747940 41747940 G A PHOX2B Missense_Mutation p.P277S 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M5-06 4 42895296 42895296 G A GRXCR1 Missense_Mutation p.E5K 0.35 tolerated_low_confidence(0.05) benign(0.004) TCGA-EE-A2M5-06 4 435916 435916 G A ZNF721 Silent p.P780P 0.21 TCGA-EE-A2M5-06 4 46737210 46737210 G A COX7B2 5'UTR 0.36 TCGA-EE-A2M5-06 4 47455144 47455144 G A COMMD8 Missense_Mutation p.P155S 0.31 tolerated(0.16) benign(0.018) TCGA-EE-A2M5-06 4 47538793 47538793 G A ATP10D Missense_Mutation p.E412K 0.19 tolerated(0.07) possibly_damaging(0.53) TCGA-EE-A2M5-06 4 48854102 48854102 C T OCIAD1 Intron 0.24 TCGA-EE-A2M5-06 4 49005959 49005959 A G CWH43 Missense_Mutation p.K337R 0.15 deleterious(0.03) possibly_damaging(0.856) TCGA-EE-A2M5-06 4 53494232 53494232 C T USP46 Silent p.K72K 0.33 TCGA-EE-A2M5-06 4 57777066 57777066 G A REST Missense_Mutation p.E88K 0.33 deleterious(0) benign(0.134) TCGA-EE-A2M5-06 4 5843134 5843134 G A CRMP1 Missense_Mutation p.R352W 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 4 5843135 5843135 G A CRMP1 Silent p.F351F 0.38 TCGA-EE-A2M5-06 4 5961091 5961091 G A C4orf50 3'UTR 0.23 TCGA-EE-A2M5-06 4 69535817 69535817 G A UGT2B15 Nonsense_Mutation p.R174* 0.21 TCGA-EE-A2M5-06 4 69693177 69693177 G A UGT2B10 Silent p.K406K 0.14 TCGA-EE-A2M5-06 4 69962301 69962301 G A UGT2B7 Silent p.G21G 0.44 TCGA-EE-A2M5-06 4 70080196 70080196 G A UGT2B11 Missense_Mutation p.T82I 0.18 deleterious(0.01) possibly_damaging(0.744) TCGA-EE-A2M5-06 4 70080515 70080515 G A UGT2B11 5'Flank 0.24 TCGA-EE-A2M5-06 4 70160494 70160494 T G UGT2B28 Missense_Mutation p.F519L 0.12 tolerated(0.14) benign(0.02) TCGA-EE-A2M5-06 4 70464963 70464963 C T UGT2A1 Splice_Site p.X498_splice 0.21 TCGA-EE-A2M5-06 4 70615496 70615496 C T SULT1B1 Silent p.V106V 0.23 TCGA-EE-A2M5-06 4 70620879 70620879 G A SULT1B1 Silent p.P19P 0.35 TCGA-EE-A2M5-06 4 71200984 71200984 A T CABS1 Missense_Mutation p.K76N 0.37 tolerated(0.1) benign(0.03) TCGA-EE-A2M5-06 4 71508967 71508967 C T ENAM Silent p.P608P 0.20 TCGA-EE-A2M5-06 4 76781931 76781931 G A PPEF2 Silent p.F717F 0.15 TCGA-EE-A2M5-06 4 77036570 77036570 G A NUP54 Silent p.V491V 0.34 TCGA-EE-A2M5-06 4 77691934 77691934 G A SHROOM3 Silent p.R1835R 0.32 TCGA-EE-A2M5-06 4 77816851 77816851 C T SOWAHB Missense_Mutation p.E718K 0.30 deleterious(0.02) possibly_damaging(0.621) TCGA-EE-A2M5-06 4 77816852 77816852 C T SOWAHB Silent p.G717G 0.31 TCGA-EE-A2M5-06 4 78815335 78815335 C T MRPL1 Missense_Mutation p.P201S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 4 80246511 80246511 G A NAA11 Missense_Mutation p.S174F 0.25 tolerated(0.11) benign(0.021) TCGA-EE-A2M5-06 4 80327788 80327788 C T GK2 Missense_Mutation p.D523N 0.21 tolerated(0.15) benign(0.066) TCGA-EE-A2M5-06 4 81967122 81967122 C T BMP3 Silent p.L183L 0.21 TCGA-EE-A2M5-06 4 84384012 84384012 A T FAM175A Silent p.L280L 0.17 TCGA-EE-A2M5-06 4 85416943 85416943 G A NKX6-1 Missense_Mutation p.T242I 0.21 deleterious(0) unknown(0) TCGA-EE-A2M5-06 4 85564200 85564200 C T CDS1 Silent p.F352F 0.15 TCGA-EE-A2M5-06 4 85694049 85694049 G A WDFY3 Silent p.T1596T 0.15 TCGA-EE-A2M5-06 4 8607895 8607895 G A CPZ Missense_Mutation p.E297K 0.24 deleterious(0) probably_damaging(0.974) TCGA-EE-A2M5-06 4 89198215 89198215 G A PPM1K Intron 0.29 TCGA-EE-A2M5-06 4 90857243 90857243 G A MMRN1 Silent p.K804K 0.22 TCGA-EE-A2M5-06 4 93225819 93225819 C T GRID2 Silent p.F4F 0.20 TCGA-EE-A2M5-06 4 95585166 95585166 C T PDLIM5 Missense_Mutation p.S609F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 4 98902414 98902414 C T STPG2 Missense_Mutation p.R223Q 0.20 tolerated(0.06) possibly_damaging(0.828) TCGA-EE-A2M5-06 5 101774462 101774462 G A SLCO6A1 Silent p.L379L 0.33 TCGA-EE-A2M5-06 5 10461368 10461368 C T ROPN1L Missense_Mutation p.P164S 0.21 tolerated(0.09) benign(0.249) TCGA-EE-A2M5-06 5 10683671 10683671 G A DAP Silent p.P55P 0.30 TCGA-EE-A2M5-06 5 1076865 1076865 G A SLC12A7 Silent p.I564I 0.32 TCGA-EE-A2M5-06 5 11159783 11159783 G A CTNND2 Silent p.I688I 0.24 TCGA-EE-A2M5-06 5 112175372 112175372 C T APC Missense_Mutation p.P1361S 0.30 probably_damaging(0.999) TCGA-EE-A2M5-06 5 112389430 112389430 C T MCC Missense_Mutation p.A814T 0.18 deleterious(0) probably_damaging(0.991) TCGA-EE-A2M5-06 5 112770152 112770152 C T TSSK1B Missense_Mutation p.D129N 0.18 deleterious(0.05) benign(0.013) TCGA-EE-A2M5-06 5 114482906 114482906 G A TRIM36 Missense_Mutation p.P162S 0.28 tolerated(0.13) benign(0.266) TCGA-EE-A2M5-06 5 115782965 115782965 G A SEMA6A Missense_Mutation p.P813S 0.37 tolerated(0.09) benign(0.054) TCGA-EE-A2M5-06 5 118860975 118860975 T C HSD17B4 Missense_Mutation p.L548P 0.26 deleterious(0.01) possibly_damaging(0.682) TCGA-EE-A2M5-06 5 121488489 121488489 C T ZNF474 Silent p.P268P 0.28 TCGA-EE-A2M5-06 5 121488490 121488490 C T ZNF474 Missense_Mutation p.L269F 0.29 tolerated(0.1) possibly_damaging(0.59) TCGA-EE-A2M5-06 5 121787122 121787122 T A SNCAIP Silent p.P860P 0.31 TCGA-EE-A2M5-06 5 121799203 121799203 G A SNCAIP 3'UTR 0.36 TCGA-EE-A2M5-06 5 126213904 126213904 G A MARCH3 Silent p.L192L 0.27 TCGA-EE-A2M5-06 5 1264578 1264578 G A TERT Silent p.F928F 0.38 TCGA-EE-A2M5-06 5 126667112 126667112 G A MEGF10 Missense_Mutation p.E38K 0.33 deleterious(0) benign(0.073) TCGA-EE-A2M5-06 5 126781199 126781199 G A MEGF10 Missense_Mutation p.A848T 0.09 deleterious(0) benign(0.224) TCGA-EE-A2M5-06 5 126993383 126993383 G A CTXN3 Missense_Mutation p.R57Q 0.31 tolerated(0.39) benign(0.116) TCGA-EE-A2M5-06 5 1278771 1278771 C T TERT Silent p.K757K 0.31 TCGA-EE-A2M5-06 5 128320902 128320902 T G SLC27A6 Silent p.V186V 0.27 TCGA-EE-A2M5-06 5 129520836 129520836 C T CHSY3 Silent p.S667S 0.23 TCGA-EE-A2M5-06 5 132200043 132200043 G A GDF9 Silent p.L61L 0.25 TCGA-EE-A2M5-06 5 132232703 132232703 G A AFF4 Missense_Mutation p.S540L 0.35 tolerated(0.17) probably_damaging(0.996) TCGA-EE-A2M5-06 5 135692979 135692979 A G TRPC7 Missense_Mutation p.F33L 0.30 deleterious(0.02) benign(0.161) TCGA-EE-A2M5-06 5 137217693 137217693 G A MYOT Missense_Mutation p.D239N 0.31 deleterious(0.03) benign(0.083) TCGA-EE-A2M5-06 5 137476508 137476508 T C BRD8 Silent p.Q1167Q 0.27 TCGA-EE-A2M5-06 5 137754837 137754837 C T KDM3B Missense_Mutation p.P1211S 0.23 tolerated(0.36) benign(0.001) TCGA-EE-A2M5-06 5 13777418 13777418 G A DNAH5 Nonsense_Mutation p.R3000* 0.31 TCGA-EE-A2M5-06 5 13781029 13781029 G A DNAH5 Silent p.L2954L 0.27 TCGA-EE-A2M5-06 5 13841134 13841134 G A DNAH5 Silent p.L1864L 0.35 TCGA-EE-A2M5-06 5 13901467 13901467 G A DNAH5 Missense_Mutation p.A649V 0.20 benign(0.008) TCGA-EE-A2M5-06 5 140048690 140048690 C T WDR55 Silent p.S229S 0.45 TCGA-EE-A2M5-06 5 140181759 140181759 G A PCDHA3 Missense_Mutation p.G326E 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2M5-06 5 140183120 140183120 C T PCDHA3 Missense_Mutation p.P780S 0.28 tolerated_low_confidence(0.12) benign(0.002) TCGA-EE-A2M5-06 5 140188692 140188692 G A PCDHA4 Silent p.T640T 0.28 TCGA-EE-A2M5-06 5 140215098 140215098 G A PCDHA7 Missense_Mutation p.R377Q 0.25 tolerated_low_confidence(0.1) benign(0.055) TCGA-EE-A2M5-06 5 140222729 140222729 C T PCDHA8 Missense_Mutation p.S608L 0.32 tolerated_low_confidence(0.05) benign(0.411) TCGA-EE-A2M5-06 5 140229995 140229995 G A PCDHA9 Missense_Mutation p.E639K 0.38 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-EE-A2M5-06 5 140256672 140256672 G A PCDHA12 Missense_Mutation p.D539N 0.29 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-EE-A2M5-06 5 140262120 140262120 G A PCDHA13 Silent p.R89R 0.18 TCGA-EE-A2M5-06 5 140307291 140307291 C T PCDHAC1 Silent p.L272L 0.27 TCGA-EE-A2M5-06 5 140307828 140307828 G A PCDHAC1 Missense_Mutation p.E451K 0.20 tolerated(0.09) benign(0.424) TCGA-EE-A2M5-06 5 140501929 140501929 C T PCDHB4 Nonsense_Mutation p.Q117* 0.32 TCGA-EE-A2M5-06 5 140516800 140516800 C T PCDHB5 Missense_Mutation p.S595L 0.21 deleterious_low_confidence(0.01) benign(0.274) TCGA-EE-A2M5-06 5 140531767 140531767 G A PCDHB6 Silent p.K643K 0.23 TCGA-EE-A2M5-06 5 140531768 140531768 G A PCDHB6 Missense_Mutation p.D644N 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A2M5-06 5 140559084 140559084 C T PCDHB8 Missense_Mutation p.S490L 0.42 deleterious_low_confidence(0) benign(0.103) TCGA-EE-A2M5-06 5 140562936 140562936 G A PCDHB16 Missense_Mutation p.D268N 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2M5-06 5 140580484 140580484 A G PCDHB11 Silent p.G379G 0.27 TCGA-EE-A2M5-06 5 140581700 140581700 G A PCDHB11 Missense_Mutation p.E785K 0.22 deleterious_low_confidence(0.05) benign(0.178) TCGA-EE-A2M5-06 5 140594625 140594625 C T PCDHB13 Silent p.F310F 0.27 TCGA-EE-A2M5-06 5 140723808 140723808 G A PCDHGA3 Missense_Mutation p.G70S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-EE-A2M5-06 5 140764100 140764100 A G PCDHGA7 Missense_Mutation p.N545S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-EE-A2M5-06 5 140764876 140764876 C T PCDHGA7 Silent p.L804L 0.33 TCGA-EE-A2M5-06 5 140772646 140772646 G A PCDHGA8 Missense_Mutation p.R89K 0.29 deleterious_low_confidence(0) possibly_damaging(0.73) TCGA-EE-A2M5-06 5 140772877 140772877 C T PCDHGA8 Missense_Mutation p.S166F 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2M5-06 5 140807430 140807430 G A PCDHGB6 Intron 0.41 TCGA-EE-A2M5-06 5 140868826 140868826 C T PCDHGC5 Missense_Mutation p.P7S 0.20 tolerated(0.43) benign(0.122) TCGA-EE-A2M5-06 5 142437220 142437220 G A ARHGAP26 Silent p.Q482Q 0.32 TCGA-EE-A2M5-06 5 1441518 1441518 C T SLC6A3 Missense_Mutation p.R125K 0.25 deleterious(0.03) benign(0.248) TCGA-EE-A2M5-06 5 14507328 14507328 C T TRIO Missense_Mutation p.R2904W 0.42 unknown(0) TCGA-EE-A2M5-06 5 145379738 145379738 G A SH3RF2 Missense_Mutation p.E166K 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2M5-06 5 145393307 145393307 C T SH3RF2 Intron 0.26 TCGA-EE-A2M5-06 5 145493820 145493820 C T LARS Missense_Mutation p.R1127Q 0.34 tolerated(0.24) benign(0.002) TCGA-EE-A2M5-06 5 145719179 145719179 G A POU4F3 Silent p.V63V 0.30 TCGA-EE-A2M5-06 5 145719180 145719180 G A POU4F3 Missense_Mutation p.D64N 0.30 deleterious(0) possibly_damaging(0.829) TCGA-EE-A2M5-06 5 146763046 146763046 T C STK32A Missense_Mutation p.F359L 0.54 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2M5-06 5 147449990 147449990 A G SPINK5 Silent p.K62K 0.32 TCGA-EE-A2M5-06 5 147649648 147649648 C T SPINK13 Missense_Mutation p.P5S 0.15 tolerated_low_confidence(0.28) benign(0.005) TCGA-EE-A2M5-06 5 148620254 148620254 G A ABLIM3 Missense_Mutation p.R407Q 0.22 deleterious(0) possibly_damaging(0.714) TCGA-EE-A2M5-06 5 148709325 148709325 T C AFAP1L1 Missense_Mutation p.I636T 0.44 deleterious(0) possibly_damaging(0.493) TCGA-EE-A2M5-06 5 150071405 150071405 G A RBM22 Missense_Mutation p.P391S 0.36 tolerated(0.22) benign(0.017) TCGA-EE-A2M5-06 5 150282705 150282705 G A ZNF300 Nonsense_Mutation p.Q21* 0.14 TCGA-EE-A2M5-06 5 150282706 150282706 G A ZNF300 Silent p.S20S 0.13 TCGA-EE-A2M5-06 5 150578589 150578589 G A CCDC69 Silent p.V96V 0.29 TCGA-EE-A2M5-06 5 150666847 150666847 G A SLC36A3 Missense_Mutation p.T264I 0.30 tolerated(0.11) benign(0.039) TCGA-EE-A2M5-06 5 151170506 151170506 C T G3BP1 Silent p.R78R 0.33 TCGA-EE-A2M5-06 5 151777644 151777644 C T NMUR2 Missense_Mutation p.R263K 0.25 deleterious(0.05) probably_damaging(0.93) TCGA-EE-A2M5-06 5 153149806 153149806 G A GRIA1 Missense_Mutation p.E711K 0.20 tolerated(0.36) possibly_damaging(0.489) TCGA-EE-A2M5-06 5 153432973 153432973 C T MFAP3 Silent p.D263D 0.25 TCGA-EE-A2M5-06 5 153792531 153792531 G A GALNT10 Missense_Mutation p.R490Q 0.23 deleterious(0.05) benign(0.014) TCGA-EE-A2M5-06 5 154394581 154394581 C T KIF4B Silent p.L388L 0.34 TCGA-EE-A2M5-06 5 156589605 156589605 C T FAM71B Silent p.E557E 0.35 TCGA-EE-A2M5-06 5 156590038 156590038 C T FAM71B Missense_Mutation p.G413E 0.30 deleterious(0.05) probably_damaging(0.977) TCGA-EE-A2M5-06 5 159776451 159776451 G A C1QTNF2 Silent p.I239I 0.31 TCGA-EE-A2M5-06 5 161300252 161300252 C T GABRA1 Missense_Mutation p.H129Y 0.40 tolerated(0.17) benign(0.224) TCGA-EE-A2M5-06 5 168212958 168212958 C T SLIT3 Missense_Mutation p.E369K 0.33 deleterious(0.03) possibly_damaging(0.573) TCGA-EE-A2M5-06 5 175110437 175110437 C T HRH2 Silent p.L67L 0.27 TCGA-EE-A2M5-06 5 175306946 175306946 C T CPLX2 Silent p.I101I 0.38 TCGA-EE-A2M5-06 5 175921194 175921194 C T FAF2 Silent p.L193L 0.28 TCGA-EE-A2M5-06 5 176002164 176002164 G A CDHR2 Missense_Mutation p.S192N 0.16 tolerated(0.45) benign(0.007) TCGA-EE-A2M5-06 5 176016391 176016391 G A CDHR2 Silent p.R1023R 0.24 TCGA-EE-A2M5-06 5 176311090 176311090 C T HK3 Missense_Mutation p.E635K 0.40 deleterious(0.01) possibly_damaging(0.773) TCGA-EE-A2M5-06 5 178140387 178140387 C T ZNF354A Silent p.L164L 0.26 TCGA-EE-A2M5-06 5 178408731 178408731 C T GRM6 Missense_Mutation p.R854Q 0.37 deleterious(0.01) benign(0.065) TCGA-EE-A2M5-06 5 179321405 179321405 G A TBC1D9B Silent p.S186S 0.21 TCGA-EE-A2M5-06 5 179743856 179743856 G A GFPT2 Silent p.L354L 0.37 TCGA-EE-A2M5-06 5 180659705 180659705 G A TRIM41 Missense_Mutation p.R319Q 0.42 tolerated(0.84) benign(0.004) TCGA-EE-A2M5-06 5 23523410 23523410 G A PRDM9 Missense_Mutation p.G298E 0.30 deleterious(0) benign(0.041) TCGA-EE-A2M5-06 5 26881394 26881394 C T CDH9 Missense_Mutation p.E741K 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 5 31983537 31983537 G A PDZD2 Silent p.E251E 0.24 TCGA-EE-A2M5-06 5 32087274 32087274 G A PDZD2 Silent p.G1240G 0.32 TCGA-EE-A2M5-06 5 32089917 32089917 G A PDZD2 Silent p.Q2121Q 0.23 TCGA-EE-A2M5-06 5 32230115 32230115 G A MTMR12 Silent p.V671V 0.32 TCGA-EE-A2M5-06 5 32230172 32230172 G A MTMR12 Silent p.I652I 0.23 TCGA-EE-A2M5-06 5 33576177 33576177 G A ADAMTS12 Silent p.I1318I 0.32 TCGA-EE-A2M5-06 5 33936924 33936924 C T RXFP3 Silent p.L27L 0.32 TCGA-EE-A2M5-06 5 35644627 35644627 G A SPEF2 Silent p.K195K 0.37 TCGA-EE-A2M5-06 5 35965644 35965644 G A UGT3A1 Silent p.F229F 0.32 TCGA-EE-A2M5-06 5 35991297 35991297 C T UGT3A1 Missense_Mutation p.G16R 0.22 tolerated(0.09) probably_damaging(0.941) TCGA-EE-A2M5-06 5 36116632 36116632 G A LMBRD2 Missense_Mutation p.R456C 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 5 37017166 37017166 G C NIPBL Missense_Mutation p.A1608P 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 5 38418302 38418302 G A EGFLAM Silent p.R543R 0.24 TCGA-EE-A2M5-06 5 38463945 38463945 G A EGFLAM Missense_Mutation p.E971K 0.18 tolerated(0.09) probably_damaging(0.992) TCGA-EE-A2M5-06 5 40764629 40764629 G A PRKAA1 Silent p.F489F 0.24 TCGA-EE-A2M5-06 5 41019062 41019062 G A MROH2B Missense_Mutation p.R834W 0.30 deleterious(0) probably_damaging(0.959) TCGA-EE-A2M5-06 5 41061700 41061700 T G MROH2B Missense_Mutation p.K196T 0.06 tolerated(0.22) benign(0.026) TCGA-EE-A2M5-06 5 41181501 41181501 T A C6 Missense_Mutation p.N296I 0.30 tolerated(0.26) benign(0.328) TCGA-EE-A2M5-06 5 41917118 41917118 G A C5orf51 Missense_Mutation p.G201E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 5 42700047 42700047 G A GHR Nonsense_Mutation p.W187* 0.17 TCGA-EE-A2M5-06 5 43040185 43040185 G A ANXA2R 5'UTR 0.24 TCGA-EE-A2M5-06 5 50689457 50689457 C T ISL1 3'UTR 0.26 TCGA-EE-A2M5-06 5 52096730 52096730 C T PELO Missense_Mutation p.P168S 0.29 deleterious(0) probably_damaging(0.951) TCGA-EE-A2M5-06 5 52223419 52223419 C T ITGA1 Silent p.I873I 0.31 TCGA-EE-A2M5-06 5 52227900 52227900 C T ITGA1 Missense_Mutation p.T932I 0.23 deleterious(0.01) benign(0.42) TCGA-EE-A2M5-06 5 52402945 52402945 G A MOCS2 Silent p.S20S 0.23 TCGA-EE-A2M5-06 5 67522769 67522769 C T PIK3R1 Missense_Mutation p.P89L 0.35 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-EE-A2M5-06 5 68487676 68487676 A T CENPH Silent p.A63A 0.28 TCGA-EE-A2M5-06 5 68661320 68661320 G A TAF9 Missense_Mutation p.S82F 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M5-06 5 71494434 71494434 C T MAP1B Missense_Mutation p.S1751F 0.32 probably_damaging(0.949) TCGA-EE-A2M5-06 5 72873745 72873745 C T UTP15 Missense_Mutation p.S320F 0.33 tolerated(0.05) benign(0.429) TCGA-EE-A2M5-06 5 74677854 74677854 G C COL4A3BP Missense_Mutation p.R641G 0.28 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A2M5-06 5 75866423 75866423 C T IQGAP2 Nonsense_Mutation p.R108* 0.18 TCGA-EE-A2M5-06 5 76129771 76129771 C T F2RL1 3'UTR 0.26 TCGA-EE-A2M5-06 5 78338173 78338173 G A DMGDH Missense_Mutation p.P376S 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 5 79026021 79026021 C T CMYA5 Missense_Mutation p.P478L 0.38 benign(0) TCGA-EE-A2M5-06 5 79030981 79030981 A G CMYA5 Silent p.Q2131Q 0.22 TCGA-EE-A2M5-06 5 79616859 79616859 G A SPZ1 Silent p.Q275Q 0.33 TCGA-EE-A2M5-06 5 89949582 89949582 C T GPR98 Silent p.S1397S 0.22 TCGA-EE-A2M5-06 5 9051999 9051999 G A SEMA5A Missense_Mutation p.S944F 0.27 deleterious(0.02) possibly_damaging(0.815) TCGA-EE-A2M5-06 5 9630016 9630016 C T TAS2R1 Silent p.P43P 0.23 TCGA-EE-A2M5-06 5 96364151 96364151 C T LNPEP Missense_Mutation p.R998C 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2M5-06 6 100895251 100895251 G A SIM1 Silent p.F297F 0.20 TCGA-EE-A2M5-06 6 102266321 102266321 C T GRIK2 Missense_Mutation p.S427F 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2M5-06 6 102376335 102376335 G A GRIK2 Missense_Mutation p.G638D 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 6 106547183 106547183 C T PRDM1 Silent p.S140S 0.29 TCGA-EE-A2M5-06 6 10705067 10705067 C T PAK1IP1 Missense_Mutation p.H244Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 6 107097034 107097034 C T QRSL1 Missense_Mutation p.S172L 0.17 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A2M5-06 6 10894423 10894423 G A SYCP2L Missense_Mutation p.G108R 0.17 deleterious(0.02) possibly_damaging(0.75) TCGA-EE-A2M5-06 6 109274309 109274309 C T ARMC2 Missense_Mutation p.S557F 0.31 tolerated(1) benign(0.002) TCGA-EE-A2M5-06 6 10927577 10927577 G A SYCP2L Missense_Mutation p.G473R 0.32 tolerated(0.38) benign(0.025) TCGA-EE-A2M5-06 6 10927578 10927578 G A SYCP2L Missense_Mutation p.G473E 0.32 tolerated(0.51) benign(0.001) TCGA-EE-A2M5-06 6 111678278 111678278 C T REV3L Missense_Mutation p.E2375K 0.15 deleterious(0.04) possibly_damaging(0.641) TCGA-EE-A2M5-06 6 116943957 116943957 C T RSPH4A Missense_Mutation p.T238I 0.22 deleterious(0.03) probably_damaging(0.911) TCGA-EE-A2M5-06 6 116943958 116943958 C T RSPH4A Silent p.T238T 0.22 TCGA-EE-A2M5-06 6 117121795 117121795 G A GPRC6A Silent p.V500V 0.20 TCGA-EE-A2M5-06 6 117150119 117150119 G A GPRC6A Missense_Mutation p.P20S 0.24 tolerated(0.68) benign(0.002) TCGA-EE-A2M5-06 6 118887280 118887280 G A CEP85L Silent p.S147S 0.36 TCGA-EE-A2M5-06 6 12296371 12296371 C T EDN1 3'UTR 0.45 TCGA-EE-A2M5-06 6 126249972 126249972 C T NCOA7 3'UTR 0.27 TCGA-EE-A2M5-06 6 127912715 127912715 T G C6orf58 Missense_Mutation p.V314G 0.19 tolerated_low_confidence(0.07) benign(0.04) TCGA-EE-A2M5-06 6 128150684 128150684 G A THEMIS Missense_Mutation p.P216S 0.27 deleterious(0) probably_damaging(0.963) TCGA-EE-A2M5-06 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.39 TCGA-EE-A2M5-06 6 130762546 130762546 C T TMEM200A Missense_Mutation p.L327F 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2M5-06 6 130763088 130763088 G A TMEM200A 3'UTR 0.35 TCGA-EE-A2M5-06 6 132030718 132030718 C T CTAGE9 Silent p.R480R 0.14 TCGA-EE-A2M5-06 6 132045206 132045206 G T ENPP3 Missense_Mutation p.Q591H 0.37 deleterious(0.04) benign(0.004) TCGA-EE-A2M5-06 6 132873904 132873904 C T TAAR8 Missense_Mutation p.P25S 0.15 tolerated(0.3) benign(0.009) TCGA-EE-A2M5-06 6 132891844 132891844 C T TAAR6 Silent p.I128I 0.23 TCGA-EE-A2M5-06 6 133767836 133767836 C T EYA4 Missense_Mutation p.S51F 0.25 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-EE-A2M5-06 6 134349893 134349893 G A SLC2A12 Missense_Mutation p.S357L 0.26 deleterious(0) probably_damaging(0.99) TCGA-EE-A2M5-06 6 134496003 134496003 G C SGK1 Intron 0.29 TCGA-EE-A2M5-06 6 135518139 135518139 T G MYB Missense_Mutation p.F415C 0.18 tolerated(0.2) benign(0.005) TCGA-EE-A2M5-06 6 136599771 136599771 C T BCLAF1 Missense_Mutation p.G83E 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2M5-06 6 138584555 138584555 G A KIAA1244 Silent p.R645R 0.38 TCGA-EE-A2M5-06 6 142399709 142399709 C G NMBR Missense_Mutation p.E252Q 0.26 tolerated(0.55) probably_damaging(0.927) TCGA-EE-A2M5-06 6 142525151 142525151 C T VTA1 Missense_Mutation p.P243S 0.30 tolerated(0.15) benign(0.175) TCGA-EE-A2M5-06 6 143806294 143806294 C T PEX3 Missense_Mutation p.S316F 0.28 tolerated(0.33) benign(0.232) TCGA-EE-A2M5-06 6 144074921 144074921 C T PHACTR2 Missense_Mutation p.S109L 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2M5-06 6 144263309 144263309 C T PLAGL1 Missense_Mutation p.S215N 0.31 tolerated(0.06) benign(0.031) TCGA-EE-A2M5-06 6 144507918 144507918 C T STX11 Nonsense_Mutation p.Q52* 0.25 TCGA-EE-A2M5-06 6 150211055 150211055 G A RAET1E Silent p.L104L 0.25 TCGA-EE-A2M5-06 6 150244165 150244165 G A RAET1G 5'UTR 0.36 TCGA-EE-A2M5-06 6 151161257 151161257 C T PLEKHG1 Missense_Mutation p.S1128F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 6 152443788 152443788 G A SYNE1 Missense_Mutation p.S8726F 0.24 probably_damaging(0.965) TCGA-EE-A2M5-06 6 157963732 157963732 C T ZDHHC14 Missense_Mutation p.P121S 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 6 158910722 158910722 C T TULP4 Missense_Mutation p.S530F 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 6 160328409 160328409 G A MAS1 Missense_Mutation p.R141Q 0.20 tolerated(0.54) possibly_damaging(0.74) TCGA-EE-A2M5-06 6 160638456 160638456 C T SLC22A2 3'UTR 0.33 TCGA-EE-A2M5-06 6 160828154 160828154 C T SLC22A3 Silent p.F205F 0.19 TCGA-EE-A2M5-06 6 161152120 161152120 G C PLG Missense_Mutation p.D432H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2M5-06 6 161160103 161160103 C T PLG Silent p.S627S 0.36 TCGA-EE-A2M5-06 6 161173178 161173178 C T PLG Silent p.A719A 0.29 TCGA-EE-A2M5-06 6 16328446 16328446 G A ATXN1 Silent p.T32T 0.37 TCGA-EE-A2M5-06 6 165832214 165832214 C T PDE10A Missense_Mutation p.D303N 0.33 deleterious(0.01) possibly_damaging(0.825) TCGA-EE-A2M5-06 6 167587355 167587355 C T TCP10L2 Missense_Mutation p.R87W 0.20 deleterious(0) possibly_damaging(0.528) TCGA-EE-A2M5-06 6 167709555 167709555 T C UNC93A Missense_Mutation p.L102P 0.31 deleterious(0) benign(0.412) TCGA-EE-A2M5-06 6 168325703 168325703 G A MLLT4 Missense_Mutation p.E1004K 0.27 tolerated(0.13) possibly_damaging(0.615) TCGA-EE-A2M5-06 6 169632808 169632808 C T THBS2 Missense_Mutation p.G628E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 6 170013713 170013713 G A WDR27 Missense_Mutation p.L755F 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M5-06 6 17817384 17817384 T C KIF13A Missense_Mutation p.M623V 0.29 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2M5-06 6 25777085 25777085 G A SLC17A4 Missense_Mutation p.R389K 0.27 tolerated(0.38) benign(0.088) TCGA-EE-A2M5-06 6 25850383 25850383 G A SLC17A3 Missense_Mutation p.P339L 0.27 tolerated(0.12) probably_damaging(0.962) TCGA-EE-A2M5-06 6 27369111 27369111 T A ZNF391 Missense_Mutation p.I321N 0.28 deleterious(0) benign(0.261) TCGA-EE-A2M5-06 6 27925786 27925786 C T OR2B6 Silent p.V256V 0.31 TCGA-EE-A2M5-06 6 28543161 28543161 C T SCAND3 Missense_Mutation p.E441K 0.30 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-EE-A2M5-06 6 28554492 28554492 C T SCAND3 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2M5-06 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.25 deleterious(0.02) benign(0.022) TCGA-EE-A2M5-06 6 29141779 29141779 C T OR2J2 Missense_Mutation p.R123C 0.34 deleterious(0.01) benign(0.336) TCGA-EE-A2M5-06 6 29364563 29364563 C T OR12D2 Silent p.F29F 0.23 TCGA-EE-A2M5-06 6 29429498 29429498 C T OR2H1 5'UTR 0.32 TCGA-EE-A2M5-06 6 30166681 30166681 G A TRIM26 Missense_Mutation p.P67L 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2M5-06 6 30656414 30656414 G A NRM 3'UTR 0.33 TCGA-EE-A2M5-06 6 31084658 31084658 G A CDSN Missense_Mutation p.S245F 0.22 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M5-06 6 31593085 31593085 C T PRRC2A Missense_Mutation p.P201S 0.24 unknown(0) TCGA-EE-A2M5-06 6 31593086 31593086 C T PRRC2A Missense_Mutation p.P201L 0.24 unknown(0) TCGA-EE-A2M5-06 6 31608608 31608608 G A BAG6 Silent p.A935A 0.31 TCGA-EE-A2M5-06 6 31656841 31656841 G A ABHD16A Silent p.S379S 0.30 TCGA-EE-A2M5-06 6 31691456 31691456 C T C6orf25 Silent p.S34S 0.24 TCGA-EE-A2M5-06 6 31838769 31838769 C T SLC44A4 Missense_Mutation p.V253M 0.32 deleterious(0.03) benign(0.059) TCGA-EE-A2M5-06 6 31838770 31838770 C T SLC44A4 Silent p.L252L 0.32 TCGA-EE-A2M5-06 6 31928279 31928279 C T SKIV2L Missense_Mutation p.S142F 0.30 deleterious(0.02) benign(0.309) TCGA-EE-A2M5-06 6 32020765 32020765 C T TNXB Missense_Mutation p.E2931K 0.17 benign(0.01) TCGA-EE-A2M5-06 6 32053659 32053659 C T TNXB Missense_Mutation p.E1006K 0.28 probably_damaging(0.986) TCGA-EE-A2M5-06 6 32782108 32782108 G A HLA-DOB Missense_Mutation p.S211F 0.25 deleterious(0.02) benign(0.302) TCGA-EE-A2M5-06 6 32975332 32975332 C T HLA-DOA Silent p.V123V 0.18 TCGA-EE-A2M5-06 6 33288175 33288175 G A DAXX Silent p.A411A 0.21 TCGA-EE-A2M5-06 6 348797 348797 G A DUSP22 Missense_Mutation p.G155E 0.17 deleterious(0.02) probably_damaging(0.949) TCGA-EE-A2M5-06 6 34985303 34985303 G A ANKS1A Missense_Mutation p.G493R 0.37 deleterious(0.02) possibly_damaging(0.455) TCGA-EE-A2M5-06 6 35212515 35212515 G A SCUBE3 Silent p.Q776Q 0.30 TCGA-EE-A2M5-06 6 35454263 35454263 G A TEAD3 Silent p.I59I 0.28 TCGA-EE-A2M5-06 6 35762856 35762856 G A CLPS 3'UTR 0.13 TCGA-EE-A2M5-06 6 37254828 37254828 C T TBC1D22B Nonsense_Mutation p.Q283* 0.24 TCGA-EE-A2M5-06 6 39282724 39282724 C T KCNK16 3'UTR 0.30 TCGA-EE-A2M5-06 6 40360048 40360048 C T LRFN2 Silent p.Q668Q 0.18 TCGA-EE-A2M5-06 6 41162494 41162494 C T TREML2 Missense_Mutation p.A152T 0.29 tolerated(0.19) benign(0.091) TCGA-EE-A2M5-06 6 41165886 41165886 G A TREML2 Silent p.L113L 0.15 TCGA-EE-A2M5-06 6 41738731 41738731 G A FRS3 Missense_Mutation p.P369S 0.26 tolerated(0.12) probably_damaging(0.926) TCGA-EE-A2M5-06 6 42613322 42613322 T G UBR2 Silent p.P801P 0.29 TCGA-EE-A2M5-06 6 42796338 42796338 C T GLTSCR1L Silent p.L89L 0.14 TCGA-EE-A2M5-06 6 43164546 43164546 C T CUL9 Missense_Mutation p.L917F 0.15 tolerated(0.07) possibly_damaging(0.897) TCGA-EE-A2M5-06 6 43171327 43171327 C T CUL9 Missense_Mutation p.P1341L 0.36 deleterious(0.04) probably_damaging(0.929) TCGA-EE-A2M5-06 6 43480049 43480049 G A YIPF3 Silent p.I303I 0.24 TCGA-EE-A2M5-06 6 44253974 44253974 G A TCTE1 Silent p.V191V 0.24 TCGA-EE-A2M5-06 6 44371580 44371580 C T CDC5L Nonsense_Mutation p.R192* 0.29 TCGA-EE-A2M5-06 6 46107693 46107693 C T ENPP4 Missense_Mutation p.L125F 0.19 tolerated(0.15) benign(0.287) TCGA-EE-A2M5-06 6 46293132 46293132 T G RCAN2 Intron 0.19 TCGA-EE-A2M5-06 6 49754132 49754132 G A PGK2 Silent p.L257L 0.37 TCGA-EE-A2M5-06 6 49754646 49754646 G A PGK2 Silent p.L85L 0.23 TCGA-EE-A2M5-06 6 49754671 49754671 G A PGK2 Missense_Mutation p.S77F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 6 50016297 50016297 G A DEFB112 Missense_Mutation p.S23F 0.22 deleterious(0) possibly_damaging(0.485) TCGA-EE-A2M5-06 6 50696949 50696949 G A TFAP2D Silent p.L269L 0.31 TCGA-EE-A2M5-06 6 55196520 55196520 G A GFRAL Silent p.G10G 0.25 TCGA-EE-A2M5-06 6 55406863 55406863 C T HMGCLL1 Missense_Mutation p.E92K 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M5-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.28 deleterious(0.02) benign(0.201) TCGA-EE-A2M5-06 6 56479241 56479241 G T DST Silent p.A1120A 0.38 TCGA-EE-A2M5-06 6 56479242 56479242 G A DST Missense_Mutation p.A1120V 0.41 benign(0.028) TCGA-EE-A2M5-06 6 56501404 56501404 A C DST Missense_Mutation p.L467R 0.24 probably_damaging(0.999) TCGA-EE-A2M5-06 6 63990070 63990070 G A LGSN Silent p.A462A 0.33 TCGA-EE-A2M5-06 6 70070979 70070979 A C BAI3 Missense_Mutation p.K1272Q 0.26 tolerated(0.49) benign(0.143) TCGA-EE-A2M5-06 6 70890386 70890386 C T COL19A1 Missense_Mutation p.P916S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 6 72006410 72006410 C T OGFRL1 Silent p.F194F 0.25 TCGA-EE-A2M5-06 6 7378996 7378996 C T CAGE1 Missense_Mutation p.E181K 0.24 tolerated(0.1) probably_damaging(0.956) TCGA-EE-A2M5-06 6 74079487 74079487 G A OOEP Missense_Mutation p.S10F 0.27 deleterious(0.01) benign(0.094) TCGA-EE-A2M5-06 6 7579632 7579632 C T DSP Missense_Mutation p.S1070F 0.18 probably_damaging(0.987) TCGA-EE-A2M5-06 6 76550387 76550387 T A MYO6 Missense_Mutation p.H213Q 0.39 deleterious(0) unknown(0) TCGA-EE-A2M5-06 6 76660395 76660395 C T IMPG1 Missense_Mutation p.G570S 0.34 tolerated(0.1) possibly_damaging(0.666) TCGA-EE-A2M5-06 6 83904175 83904175 C T RWDD2A Missense_Mutation p.S2F 0.25 deleterious(0) possibly_damaging(0.675) TCGA-EE-A2M5-06 6 84108094 84108094 C T ME1 Silent p.R118R 0.25 TCGA-EE-A2M5-06 6 8419894 8419894 G A SLC35B3 Silent p.S233S 0.31 TCGA-EE-A2M5-06 6 84292059 84292059 G A SNAP91 Silent p.F677F 0.31 TCGA-EE-A2M5-06 6 84417530 84417530 T A SNAP91 Missense_Mutation p.K39N 0.19 deleterious(0) unknown(0) TCGA-EE-A2M5-06 6 88854124 88854124 G A CNR1 Silent p.I290I 0.21 TCGA-EE-A2M5-06 6 88854820 88854820 G A CNR1 Silent p.F58F 0.15 TCGA-EE-A2M5-06 6 89967665 89967665 G A GABRR2 Silent p.T374T 0.28 TCGA-EE-A2M5-06 6 91233485 91233485 G A MAP3K7 Silent p.S458S 0.21 TCGA-EE-A2M5-06 6 93974331 93974331 C T EPHA7 Missense_Mutation p.G575S 0.25 tolerated(0.4) benign(0.081) TCGA-EE-A2M5-06 6 94120643 94120643 C T EPHA7 Silent p.R136R 0.32 TCGA-EE-A2M5-06 6 94129030 94129030 C T EPHA7 Nonsense_Mutation p.W10* 0.26 TCGA-EE-A2M5-06 6 96651530 96651530 C T FUT9 Missense_Mutation p.P167S 0.23 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A2M5-06 6 96651531 96651531 C T FUT9 Missense_Mutation p.P167L 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2M5-06 6 97052698 97052698 G A FHL5 Missense_Mutation p.E78K 0.22 deleterious(0.02) probably_damaging(0.977) TCGA-EE-A2M5-06 6 97339081 97339081 G A NDUFAF4 Nonsense_Mutation p.Q143* 0.20 TCGA-EE-A2M5-06 6 99353320 99353320 G A FBXL4 Missense_Mutation p.S362F 0.24 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A2M5-06 7 100029239 100029239 C T MEPCE Missense_Mutation p.P533L 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2M5-06 7 100190506 100190506 C T FBXO24 Missense_Mutation p.A258V 0.37 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A2M5-06 7 100198468 100198468 G C FBXO24 Silent p.L601L 0.17 TCGA-EE-A2M5-06 7 100226950 100226950 C T TFR2 Missense_Mutation p.G439E 0.34 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 7 100680287 100680287 G A MUC17 Missense_Mutation p.E1864K 0.33 benign(0.403) TCGA-EE-A2M5-06 7 100686970 100686970 C T MUC17 Silent p.T4091T 0.32 TCGA-EE-A2M5-06 7 100861454 100861454 C T ZNHIT1 5'UTR 0.26 TCGA-EE-A2M5-06 7 103033461 103033461 C T SLC26A5 Missense_Mutation p.D342N 0.34 tolerated(0.55) probably_damaging(0.999) TCGA-EE-A2M5-06 7 103124178 103124178 C T RELN Missense_Mutation p.G3368E 0.26 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2M5-06 7 106515219 106515219 G A PIK3CG Missense_Mutation p.D788N 0.30 deleterious(0.01) possibly_damaging(0.677) TCGA-EE-A2M5-06 7 107053059 107053059 A G COG5 Missense_Mutation p.I217T 0.26 tolerated(0.32) benign(0.039) TCGA-EE-A2M5-06 7 11076227 11076227 G A PHF14 Silent p.V595V 0.18 TCGA-EE-A2M5-06 7 112424755 112424755 G C TMEM168 Missense_Mutation p.I42M 0.36 deleterious(0.02) benign(0.022) TCGA-EE-A2M5-06 7 117246789 117246789 C T CFTR Silent p.T990T 0.28 TCGA-EE-A2M5-06 7 119914609 119914609 G A KCND2 5'UTR 0.26 TCGA-EE-A2M5-06 7 120591172 120591172 A T ING3 Intron 0.26 TCGA-EE-A2M5-06 7 121651597 121651597 C T PTPRZ1 Missense_Mutation p.R833C 0.33 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-EE-A2M5-06 7 123594488 123594488 T G SPAM1 Silent p.V288V 0.31 TCGA-EE-A2M5-06 7 123600076 123600076 C T SPAM1 Intron 0.30 TCGA-EE-A2M5-06 7 124387061 124387061 G A GPR37 Missense_Mutation p.P454S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 7 126746637 126746637 C T GRM8 Missense_Mutation p.G214R 0.43 tolerated(0.06) possibly_damaging(0.881) TCGA-EE-A2M5-06 7 128484727 128484727 C T FLNC Missense_Mutation p.P1070S 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2M5-06 7 128484728 128484728 C T FLNC Missense_Mutation p.P1070L 0.20 tolerated(0.05) probably_damaging(1) TCGA-EE-A2M5-06 7 128496609 128496609 C T FLNC Missense_Mutation p.A2430V 0.41 tolerated(0.41) benign(0.257) TCGA-EE-A2M5-06 7 129311382 129311382 C T NRF1 Missense_Mutation p.R113W 0.32 deleterious(0.03) benign(0.204) TCGA-EE-A2M5-06 7 130353575 130353575 G A TSGA13 3'UTR 0.42 TCGA-EE-A2M5-06 7 131189150 131189150 C T PODXL Missense_Mutation p.E533K 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 7 133861729 133861729 G A LRGUK Missense_Mutation p.E341K 0.24 deleterious(0.02) possibly_damaging(0.743) TCGA-EE-A2M5-06 7 134222961 134222961 C T AKR1B10 Missense_Mutation p.H253Y 0.26 tolerated(0.12) possibly_damaging(0.771) TCGA-EE-A2M5-06 7 134851454 134851454 G A C7orf49 Missense_Mutation p.P128L 0.31 tolerated(0.27) benign(0.003) TCGA-EE-A2M5-06 7 137075915 137075915 G A DGKI 3'UTR 0.33 TCGA-EE-A2M5-06 7 137263039 137263039 G A DGKI Nonsense_Mutation p.R559* 0.15 TCGA-EE-A2M5-06 7 137565204 137565204 G A CREB3L2 3'UTR 0.27 TCGA-EE-A2M5-06 7 139090426 139090426 A G LUC7L2 Missense_Mutation p.K201E 0.12 tolerated(0.2) benign(0.241) TCGA-EE-A2M5-06 7 140221841 140221841 C T DENND2A Missense_Mutation p.E909K 0.28 deleterious(0) probably_damaging(0.973) TCGA-EE-A2M5-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M5-06 7 141631617 141631617 G A CLEC5A Nonsense_Mutation p.Q119* 0.31 TCGA-EE-A2M5-06 7 141721447 141721447 G A MGAM Missense_Mutation p.G207E 0.30 tolerated(0.06) benign(0.025) TCGA-EE-A2M5-06 7 141736637 141736637 C T MGAM Silent p.A697A 0.30 TCGA-EE-A2M5-06 7 141755355 141755355 C T MGAM Intron 0.23 TCGA-EE-A2M5-06 7 141765569 141765569 C T MGAM Intron 0.61 TCGA-EE-A2M5-06 7 142032018 142032018 C T TRBV7-1 5'UTR 0.24 TCGA-EE-A2M5-06 7 142206948 142206948 G A TRBV10-2 Missense_Mutation p.L5F 0.39 deleterious(0.03) benign(0.056) TCGA-EE-A2M5-06 7 142224244 142224244 C T TRBV11-1 Nonsense_Mutation p.W8* 0.29 TCGA-EE-A2M5-06 7 142231754 142231754 G A TRBV10-1 Nonsense_Mutation p.R55* 0.31 TCGA-EE-A2M5-06 7 142247212 142247212 C T TRBV7-3 Missense_Mutation p.D82N 0.55 TCGA-EE-A2M5-06 7 142247604 142247604 G A TRBV7-3 5'UTR 0.23 TCGA-EE-A2M5-06 7 142251101 142251101 G A TRBV6-4 Missense_Mutation p.L13F 0.31 tolerated(0.24) benign(0.055) TCGA-EE-A2M5-06 7 142423519 142423519 G A TRBV27 Missense_Mutation p.G59R 0.31 TCGA-EE-A2M5-06 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.15 TCGA-EE-A2M5-06 7 142622546 142622546 C T TRPV5 Intron 0.42 TCGA-EE-A2M5-06 7 142622547 142622547 C T TRPV5 Intron 0.42 TCGA-EE-A2M5-06 7 142636642 142636642 G A C7orf34 5'UTR 0.28 TCGA-EE-A2M5-06 7 142724186 142724186 G A OR9A2 Missense_Mutation p.H12Y 0.39 tolerated(0.51) benign(0) TCGA-EE-A2M5-06 7 142881493 142881493 C T TAS2R39 Nonsense_Mutation p.R328* 0.26 TCGA-EE-A2M5-06 7 143140973 143140973 G A TAS2R60 Nonsense_Mutation p.W143* 0.37 TCGA-EE-A2M5-06 7 143141201 143141201 C A TAS2R60 Missense_Mutation p.S219Y 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M5-06 7 143632869 143632869 C T OR2F2 Silent p.L182L 0.25 TCGA-EE-A2M5-06 7 143633222 143633222 G A OR2F2 Silent p.G299G 0.23 TCGA-EE-A2M5-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.32 deleterious(0.03) benign(0.003) TCGA-EE-A2M5-06 7 144098309 144098309 G A NOBOX Missense_Mutation p.S225L 0.29 deleterious(0.03) benign(0.092) TCGA-EE-A2M5-06 7 148512073 148512073 A C EZH2 Missense_Mutation p.C535W 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 7 149152579 149152579 G A ZNF777 Missense_Mutation p.P179S 0.27 tolerated(0.31) benign(0.117) TCGA-EE-A2M5-06 7 149480748 149480748 G A SSPO RNA 0.23 TCGA-EE-A2M5-06 7 150171526 150171526 G A GIMAP8 Missense_Mutation p.G370E 0.26 tolerated(1) benign(0.097) TCGA-EE-A2M5-06 7 150174578 150174578 C T GIMAP8 Silent p.L570L 0.26 TCGA-EE-A2M5-06 7 150417509 150417509 C T GIMAP1 Silent p.F139F 0.35 TCGA-EE-A2M5-06 7 150417759 150417759 G A GIMAP1 Missense_Mutation p.E223K 0.64 tolerated(0.27) benign(0.168) TCGA-EE-A2M5-06 7 150749751 150749751 G C ASIC3 Missense_Mutation p.C543S 0.20 tolerated_low_confidence(0.28) possibly_damaging(0.765) TCGA-EE-A2M5-06 7 150761667 150761667 C T SLC4A2 Missense_Mutation p.P91L 0.36 tolerated_low_confidence(0.12) probably_damaging(0.982) TCGA-EE-A2M5-06 7 151093230 151093230 G A WDR86 Missense_Mutation p.R120W 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 7 151664346 151664346 A G GALNTL5 Missense_Mutation p.I5M 0.21 tolerated(0.18) benign(0.025) TCGA-EE-A2M5-06 7 151851144 151851144 C G KMT2C Missense_Mutation p.R4076T 0.29 benign(0.434) TCGA-EE-A2M5-06 7 155094039 155094039 C T INSIG1 Missense_Mutation p.R206C 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 7 155530837 155530837 A G RBM33 Missense_Mutation p.N493D 0.31 deleterious(0.02) benign(0.096) TCGA-EE-A2M5-06 7 157926392 157926392 C T PTPRN2 Silent p.R511R 0.22 TCGA-EE-A2M5-06 7 157926726 157926726 C T PTPRN2 Missense_Mutation p.G400E 0.40 tolerated(0.09) possibly_damaging(0.873) TCGA-EE-A2M5-06 7 1586623 1586623 C T TMEM184A Missense_Mutation p.E403K 0.47 tolerated(0.09) probably_damaging(0.947) TCGA-EE-A2M5-06 7 1586624 1586624 C T TMEM184A Silent p.L402L 0.45 TCGA-EE-A2M5-06 7 16737780 16737780 C T BZW2 Silent p.A359A 0.40 TCGA-EE-A2M5-06 7 20793112 20793112 G A ABCB5 Missense_Mutation p.D1187N 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 7 21675610 21675610 G A DNAH11 Missense_Mutation p.R1546Q 0.43 benign(0.286) TCGA-EE-A2M5-06 7 21856200 21856200 C T DNAH11 Missense_Mutation p.A3490V 0.16 probably_damaging(0.993) TCGA-EE-A2M5-06 7 21892109 21892109 G A DNAH11 Missense_Mutation p.D3648N 0.17 benign(0.274) TCGA-EE-A2M5-06 7 23810624 23810624 G A STK31 Missense_Mutation p.D572N 0.47 deleterious(0.01) benign(0.018) TCGA-EE-A2M5-06 7 2409303 2409303 C T EIF3B Missense_Mutation p.P534S 0.50 tolerated(0.65) benign(0.052) TCGA-EE-A2M5-06 7 2409304 2409304 C T EIF3B Missense_Mutation p.P534L 0.49 tolerated(0.2) benign(0.366) TCGA-EE-A2M5-06 7 24329170 24329170 G A NPY Missense_Mutation p.E81K 0.19 tolerated(0.05) benign(0.445) TCGA-EE-A2M5-06 7 26232960 26232960 C T HNRNPA2B1 Missense_Mutation p.G304E 0.23 deleterious(0.03) benign(0.002) TCGA-EE-A2M5-06 7 26766572 26766572 T A SKAP2 Missense_Mutation p.N175Y 0.26 tolerated(0.08) probably_damaging(0.995) TCGA-EE-A2M5-06 7 30491125 30491125 G A NOD1 Silent p.P636P 0.25 TCGA-EE-A2M5-06 7 34724193 34724193 C T NPSR1 Silent p.L59L 0.21 TCGA-EE-A2M5-06 7 37382279 37382279 C T ELMO1 Missense_Mutation p.D6N 0.30 tolerated(0.55) probably_damaging(0.999) TCGA-EE-A2M5-06 7 37780794 37780794 G A GPR141 Missense_Mutation p.E267K 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M5-06 7 37890317 37890317 G A NME8 Missense_Mutation p.E60K 0.30 deleterious(0.04) possibly_damaging(0.477) TCGA-EE-A2M5-06 7 4014075 4014075 C T SDK1 Missense_Mutation p.S631F 0.14 deleterious(0) possibly_damaging(0.832) TCGA-EE-A2M5-06 7 41729932 41729932 C T INHBA Silent p.G199G 0.29 TCGA-EE-A2M5-06 7 42004228 42004228 G A GLI3 Silent p.S1481S 0.16 TCGA-EE-A2M5-06 7 44579357 44579357 C T NPC1L1 Silent p.L213L 0.28 TCGA-EE-A2M5-06 7 44795885 44795885 C T ZMIZ2 Missense_Mutation p.P13S 0.24 tolerated_low_confidence(0.15) benign(0.005) TCGA-EE-A2M5-06 7 45006321 45006321 G A MYO1G Silent p.V633V 0.33 TCGA-EE-A2M5-06 7 48056919 48056919 C T SUN3 Silent p.Q76Q 0.23 TCGA-EE-A2M5-06 7 50121403 50121403 G A ZPBP Nonsense_Mutation p.Q101* 0.26 TCGA-EE-A2M5-06 7 50467663 50467663 G A IKZF1 Missense_Mutation p.E258K 0.38 deleterious(0) probably_damaging(0.96) TCGA-EE-A2M5-06 7 50537803 50537803 C T DDC Missense_Mutation p.G370R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 7 51096438 51096438 C T COBL Silent p.E785E 0.17 TCGA-EE-A2M5-06 7 51096964 51096964 C T COBL Missense_Mutation p.G610E 0.33 tolerated(1) benign(0.002) TCGA-EE-A2M5-06 7 5540617 5540617 G A FBXL18 Missense_Mutation p.S428F 0.70 deleterious(0.03) benign(0.144) TCGA-EE-A2M5-06 7 5569212 5569212 G A ACTB Missense_Mutation p.A26V 0.38 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-EE-A2M5-06 7 56051492 56051492 C T GBAS Silent p.F172F 0.43 TCGA-EE-A2M5-06 7 57188775 57188775 C T ZNF479 Missense_Mutation p.G116E 0.35 tolerated(1) benign(0.062) TCGA-EE-A2M5-06 7 6026544 6026544 G A PMS2 Silent p.L618L 0.22 TCGA-EE-A2M5-06 7 62752264 62752264 C T ZNF733P RNA 0.17 TCGA-EE-A2M5-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.48 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2M5-06 7 64526718 64526718 G C SNORA22 3'Flank 0.48 TCGA-EE-A2M5-06 7 6465685 6465685 G A DAGLB Silent p.F330F 0.23 TCGA-EE-A2M5-06 7 70880941 70880941 G A WBSCR17 Missense_Mutation p.R219K 0.52 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2M5-06 7 71488683 71488683 C T CALN1 Missense_Mutation p.D154N 0.22 deleterious(0) benign(0.053) TCGA-EE-A2M5-06 7 74486466 74486466 G A WBSCR16 Missense_Mutation p.R148W 0.27 deleterious(0.01) benign(0.022) TCGA-EE-A2M5-06 7 75178288 75178288 G A HIP1 Silent p.P769P 0.23 TCGA-EE-A2M5-06 7 75441142 75441142 C T CCL24 Missense_Mutation p.R111K 0.17 tolerated(0.14) benign(0.028) TCGA-EE-A2M5-06 7 75959206 75959206 C A YWHAG Silent p.A144A 0.34 TCGA-EE-A2M5-06 7 82579670 82579670 T C PCLO Missense_Mutation p.K3412E 0.25 unknown(0) TCGA-EE-A2M5-06 7 82584769 82584769 C T PCLO Missense_Mutation p.E1834K 0.30 unknown(0) TCGA-EE-A2M5-06 7 82595441 82595441 G A PCLO Silent p.I1221I 0.25 TCGA-EE-A2M5-06 7 82785054 82785054 T C PCLO Silent p.P301P 0.20 TCGA-EE-A2M5-06 7 84727254 84727254 G A SEMA3D Missense_Mutation p.P60L 0.22 tolerated(0.5) benign(0.039) TCGA-EE-A2M5-06 7 86394461 86394461 C T GRM3 5'UTR 0.25 TCGA-EE-A2M5-06 7 86468243 86468243 C T GRM3 Silent p.F471F 0.47 TCGA-EE-A2M5-06 7 86468433 86468433 G A GRM3 Missense_Mutation p.E535K 0.31 tolerated(0.09) possibly_damaging(0.455) TCGA-EE-A2M5-06 7 86479837 86479837 G A GRM3 Missense_Mutation p.G848E 0.29 tolerated(0.1) benign(0.342) TCGA-EE-A2M5-06 7 87912034 87912034 G A STEAP4 Silent p.F302F 0.20 TCGA-EE-A2M5-06 7 90585031 90585031 C T CDK14 Silent p.S264S 0.35 TCGA-EE-A2M5-06 7 90675251 90675251 C T CDK14 Missense_Mutation p.H343Y 0.19 tolerated(0.12) benign(0) TCGA-EE-A2M5-06 7 92762860 92762860 C T SAMD9L Missense_Mutation p.E809K 0.23 deleterious(0) possibly_damaging(0.844) TCGA-EE-A2M5-06 7 92838107 92838107 G A HEPACAM2 Silent p.I266I 0.16 TCGA-EE-A2M5-06 7 94038684 94038684 C T COL1A2 Silent p.P281P 0.18 TCGA-EE-A2M5-06 7 94185045 94185045 C T CASD1 Missense_Mutation p.S790F 0.21 deleterious(0.02) benign(0.094) TCGA-EE-A2M5-06 7 95157127 95157127 G A ASB4 Missense_Mutation p.A164T 0.21 deleterious(0) benign(0.223) TCGA-EE-A2M5-06 7 95838187 95838187 C T SLC25A13 Missense_Mutation p.R144K 0.28 tolerated(0.69) benign(0.002) TCGA-EE-A2M5-06 7 98256592 98256592 G A NPTX2 Missense_Mutation p.G335E 0.43 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M5-06 7 98256593 98256593 G A NPTX2 Silent p.G335G 0.44 TCGA-EE-A2M5-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.25 probably_damaging(0.984) TCGA-EE-A2M5-06 7 99381677 99381677 C T CYP3A4 Missense_Mutation p.E10K 0.40 deleterious(0.02) possibly_damaging(0.786) TCGA-EE-A2M5-06 7 99447243 99447243 C T CYP3A43 Missense_Mutation p.P199L 0.20 deleterious(0.01) benign(0.326) TCGA-EE-A2M5-06 7 99711359 99711359 G A TAF6 Missense_Mutation p.P130S 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 7 99755306 99755306 C T C7orf43 Missense_Mutation p.R196Q 0.23 tolerated(0.05) benign(0.417) TCGA-EE-A2M5-06 8 100654161 100654161 G A VPS13B Silent p.V1806V 0.35 TCGA-EE-A2M5-06 8 103311161 103311161 G A UBR5 Nonsense_Mutation p.R1081* 0.28 TCGA-EE-A2M5-06 8 10388883 10388883 C T PRSS55 Silent p.I142I 0.36 TCGA-EE-A2M5-06 8 10467248 10467248 G A RP1L1 Missense_Mutation p.P1454S 0.32 unknown(0) TCGA-EE-A2M5-06 8 10470221 10470221 C A RP1L1 Nonsense_Mutation p.E463* 0.30 TCGA-EE-A2M5-06 8 10470338 10470338 T C RP1L1 Missense_Mutation p.K424E 0.36 benign(0.407) TCGA-EE-A2M5-06 8 105456639 105456639 C T DPYS Silent p.G210G 0.20 TCGA-EE-A2M5-06 8 106808023 106808023 C T ZFPM2 Intron 0.25 TCGA-EE-A2M5-06 8 106808024 106808024 C T ZFPM2 Intron 0.25 TCGA-EE-A2M5-06 8 108334338 108334338 G A ANGPT1 Silent p.I198I 0.24 TCGA-EE-A2M5-06 8 110453035 110453035 G A PKHD1L1 Silent p.R1351R 0.29 TCGA-EE-A2M5-06 8 110487439 110487439 T A PKHD1L1 Missense_Mutation p.F2900I 0.34 deleterious(0) probably_damaging(0.974) TCGA-EE-A2M5-06 8 113403005 113403005 C T CSMD3 Missense_Mutation p.G1941E 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 8 117861238 117861238 G A RAD21 Nonsense_Mutation p.Q551* 0.30 TCGA-EE-A2M5-06 8 119209900 119209900 C T SAMD12 3'UTR 0.24 TCGA-EE-A2M5-06 8 119391597 119391597 T C SAMD12 3'UTR 0.47 TCGA-EE-A2M5-06 8 121357668 121357668 C T COL14A1 Missense_Mutation p.S1648F 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M5-06 8 121357669 121357669 C T COL14A1 Silent p.S1648S 0.17 TCGA-EE-A2M5-06 8 122641375 122641375 C T HAS2 Missense_Mutation p.R69Q 0.24 deleterious(0.03) benign(0.033) TCGA-EE-A2M5-06 8 124663913 124663913 G C KLHL38 Silent p.P418P 0.26 TCGA-EE-A2M5-06 8 126061373 126061373 G A KIAA0196 Missense_Mutation p.H752Y 0.23 tolerated(0.08) benign(0.002) TCGA-EE-A2M5-06 8 126379287 126379287 T C NSMCE2 3'UTR 0.33 TCGA-EE-A2M5-06 8 133008666 133008666 T G EFR3A Silent p.L693L 0.48 TCGA-EE-A2M5-06 8 134072418 134072418 C T SLA Silent p.G36G 0.35 TCGA-EE-A2M5-06 8 139149481 139149481 G A FAM135B Silent p.V1308V 0.32 TCGA-EE-A2M5-06 8 139153502 139153502 G A FAM135B Silent p.F1243F 0.39 TCGA-EE-A2M5-06 8 139160820 139160820 C T FAM135B Missense_Mutation p.E1131K 0.17 deleterious(0) benign(0.196) TCGA-EE-A2M5-06 8 139163683 139163683 G A FAM135B Missense_Mutation p.S1012F 0.29 tolerated(0.29) benign(0.002) TCGA-EE-A2M5-06 8 139163756 139163756 T G FAM135B Missense_Mutation p.T988P 0.30 tolerated(0.1) benign(0.004) TCGA-EE-A2M5-06 8 139189659 139189659 C T FAM135B Missense_Mutation p.R345Q 0.33 deleterious(0.05) benign(0.408) TCGA-EE-A2M5-06 8 13947897 13947897 G A SGCZ 3'UTR 0.32 TCGA-EE-A2M5-06 8 139661981 139661981 G A COL22A1 Missense_Mutation p.P1125L 0.21 unknown(0) TCGA-EE-A2M5-06 8 139707092 139707092 C T COL22A1 Missense_Mutation p.D875N 0.11 possibly_damaging(0.774) TCGA-EE-A2M5-06 8 139824047 139824047 C T COL22A1 Missense_Mutation p.E482K 0.36 unknown(0) TCGA-EE-A2M5-06 8 143599524 143599524 C T BAI1 Missense_Mutation p.S948L 0.24 deleterious(0) possibly_damaging(0.651) TCGA-EE-A2M5-06 8 144130644 144130644 G A C8orf31 Missense_Mutation p.G125E 0.24 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A2M5-06 8 144680968 144680968 G A TIGD5 Missense_Mutation p.D299N 0.29 tolerated(0.29) benign(0.046) TCGA-EE-A2M5-06 8 145619979 145619979 G A CPSF1 Silent p.P1149P 0.26 TCGA-EE-A2M5-06 8 145619980 145619980 G A CPSF1 Missense_Mutation p.P1149L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 8 145641266 145641266 C T SLC39A4 Silent p.K134K 0.30 TCGA-EE-A2M5-06 8 145661535 145661535 G A TONSL Missense_Mutation p.R761W 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 8 145699683 145699683 T A FOXH1 Missense_Mutation p.S346C 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2M5-06 8 1497183 1497183 C T DLGAP2 Silent p.I108I 0.31 TCGA-EE-A2M5-06 8 15508281 15508281 C T TUSC3 Silent p.F128F 0.29 TCGA-EE-A2M5-06 8 1581164 1581164 C T DLGAP2 Missense_Mutation p.P508S 0.19 tolerated(0.55) benign(0.145) TCGA-EE-A2M5-06 8 16026226 16026226 C T MSR1 Missense_Mutation p.R124K 0.27 tolerated(0.24) benign(0.06) TCGA-EE-A2M5-06 8 16961967 16961967 G T MICU3 Missense_Mutation p.G351V 0.19 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M5-06 8 1728728 1728728 C T CLN8 Missense_Mutation p.P286S 0.31 tolerated_low_confidence(0.32) benign(0.001) TCGA-EE-A2M5-06 8 1728729 1728729 C T CLN8 Missense_Mutation p.P286L 0.33 deleterious_low_confidence(0.01) benign(0.027) TCGA-EE-A2M5-06 8 21847913 21847913 C T XPO7 Missense_Mutation p.H643Y 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M5-06 8 24324313 24324313 G A ADAM7 Missense_Mutation p.G131R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 8 24344783 24344783 C T ADAM7 Silent p.F348F 0.27 TCGA-EE-A2M5-06 8 24350739 24350739 A G ADAM7 Silent p.G613G 0.19 TCGA-EE-A2M5-06 8 25266315 25266315 T A DOCK5 Intron 0.43 TCGA-EE-A2M5-06 8 26722229 26722229 G A ADRA1A Silent p.F86F 0.26 TCGA-EE-A2M5-06 8 27396186 27396186 C T EPHX2 Missense_Mutation p.S418F 0.33 deleterious(0.01) possibly_damaging(0.46) TCGA-EE-A2M5-06 8 27457476 27457476 C T CLU Missense_Mutation p.E329K 0.22 tolerated(0.08) benign(0.169) TCGA-EE-A2M5-06 8 27729540 27729540 C A SCARA5 Nonsense_Mutation p.E467* 0.33 TCGA-EE-A2M5-06 8 2807756 2807756 A T CSMD1 Silent p.G3437G 0.27 TCGA-EE-A2M5-06 8 2820090 2820090 C T CSMD1 Missense_Mutation p.E3176K 0.41 benign(0.027) TCGA-EE-A2M5-06 8 2857480 2857480 G A CSMD1 Missense_Mutation p.P2735S 0.29 benign(0.016) TCGA-EE-A2M5-06 8 2910145 2910145 G A CSMD1 Missense_Mutation p.S2500F 0.20 possibly_damaging(0.575) TCGA-EE-A2M5-06 8 2964161 2964161 C T CSMD1 Missense_Mutation p.D2280N 0.25 possibly_damaging(0.562) TCGA-EE-A2M5-06 8 30209619 30209619 C T TUBBP1 RNA 0.22 TCGA-EE-A2M5-06 8 3224591 3224591 G A CSMD1 Silent p.F1026F 0.35 TCGA-EE-A2M5-06 8 3226852 3226852 G A CSMD1 Silent p.V941V 0.23 TCGA-EE-A2M5-06 8 33347814 33347814 T C MAK16 Missense_Mutation p.V135A 0.30 deleterious(0) probably_damaging(0.915) TCGA-EE-A2M5-06 8 35608148 35608148 G A UNC5D Missense_Mutation p.D662N 0.21 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2M5-06 8 38124821 38124821 C T PPAPDC1B Missense_Mutation p.E143K 0.30 deleterious(0) probably_damaging(0.934) TCGA-EE-A2M5-06 8 38277080 38277080 T C FGFR1 Missense_Mutation p.K450E 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2M5-06 8 38282038 38282038 G A FGFR1 Nonsense_Mutation p.Q340* 0.32 TCGA-EE-A2M5-06 8 3889440 3889440 A T CSMD1 Silent p.A199A 0.23 TCGA-EE-A2M5-06 8 39068812 39068812 G A ADAM32 Missense_Mutation p.G401E 0.40 tolerated(1) benign(0.211) TCGA-EE-A2M5-06 8 39564342 39564342 C T ADAM18 Missense_Mutation p.P646S 0.29 tolerated(0.09) probably_damaging(0.94) TCGA-EE-A2M5-06 8 39627000 39627000 G A ADAM2 Missense_Mutation p.P375S 0.25 deleterious(0.03) possibly_damaging(0.657) TCGA-EE-A2M5-06 8 39792586 39792586 G A IDO2 5'UTR 0.27 TCGA-EE-A2M5-06 8 41529905 41529905 G A ANK1 Missense_Mutation p.T1729I 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.549) TCGA-EE-A2M5-06 8 42176873 42176873 G A IKBKB Missense_Mutation p.D484N 0.27 deleterious(0.03) probably_damaging(0.931) TCGA-EE-A2M5-06 8 42611871 42611871 G A CHRNA6 Silent p.S157S 0.30 TCGA-EE-A2M5-06 8 48749903 48749903 G A PRKDC Missense_Mutation p.S2543F 0.14 probably_damaging(0.987) TCGA-EE-A2M5-06 8 55537550 55537550 C T RP1 Missense_Mutation p.P370S 0.32 tolerated(0.25) benign(0.025) TCGA-EE-A2M5-06 8 55540040 55540040 G A RP1 Missense_Mutation p.E1200K 0.36 tolerated(0.26) benign(0.263) TCGA-EE-A2M5-06 8 55541654 55541654 G A RP1 Missense_Mutation p.G1738R 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 8 56436118 56436118 G A XKR4 Missense_Mutation p.E429K 0.28 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M5-06 8 56723525 56723525 C T TGS1 Silent p.F743F 0.31 TCGA-EE-A2M5-06 8 61192324 61192324 T C CA8 Silent p.P72P 0.30 TCGA-EE-A2M5-06 8 62212800 62212800 G A CLVS1 Silent p.R138R 0.28 TCGA-EE-A2M5-06 8 65528446 65528446 T A CYP7B1 Nonsense_Mutation p.K218* 0.32 TCGA-EE-A2M5-06 8 65528455 65528455 C T CYP7B1 Missense_Mutation p.D215N 0.29 tolerated(0.31) benign(0.083) TCGA-EE-A2M5-06 8 68007875 68007875 C T CSPP1 Silent p.D286D 0.19 TCGA-EE-A2M5-06 8 68007876 68007876 C T CSPP1 Nonsense_Mutation p.Q287* 0.19 TCGA-EE-A2M5-06 8 68658276 68658276 C G CPA6 Missense_Mutation p.S30T 0.38 tolerated(0.1) benign(0.046) TCGA-EE-A2M5-06 8 68956771 68956771 C T PREX2 Missense_Mutation p.R297C 0.31 deleterious(0) probably_damaging(0.991) TCGA-EE-A2M5-06 8 68989694 68989694 T C PREX2 Silent p.F544F 0.21 TCGA-EE-A2M5-06 8 69020425 69020425 T A PREX2 Missense_Mutation p.F933I 0.27 deleterious(0) probably_damaging(0.983) TCGA-EE-A2M5-06 8 69021805 69021805 C T PREX2 Silent p.G1031G 0.19 TCGA-EE-A2M5-06 8 69699744 69699744 G A C8orf34 Missense_Mutation p.E508K 0.27 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A2M5-06 8 70964320 70964320 C T PRDM14 Missense_Mutation p.D570N 0.22 tolerated_low_confidence(0.16) benign(0.002) TCGA-EE-A2M5-06 8 7340208 7340208 T A DEFB106B Missense_Mutation p.K39I 0.16 tolerated(0.17) probably_damaging(0.983) TCGA-EE-A2M5-06 8 75156789 75156789 G A JPH1 Missense_Mutation p.P627L 0.23 tolerated(0.17) benign(0.055) TCGA-EE-A2M5-06 8 76476370 76476370 A T HNF4G 3'UTR 0.28 TCGA-EE-A2M5-06 8 77617513 77617513 G A ZFHX4 Missense_Mutation p.G397E 0.26 probably_damaging(0.969) TCGA-EE-A2M5-06 8 77767085 77767085 G A ZFHX4 Missense_Mutation p.G2643E 0.32 probably_damaging(0.999) TCGA-EE-A2M5-06 8 82571638 82571638 C T IMPA1 Missense_Mutation p.R320K 0.23 tolerated(0.48) possibly_damaging(0.732) TCGA-EE-A2M5-06 8 82667692 82667692 G A CHMP4C Silent p.R152R 0.32 TCGA-EE-A2M5-06 8 8643465 8643465 G A MFHAS1 3'UTR 0.29 TCGA-EE-A2M5-06 8 87570629 87570629 G A CPNE3 Silent p.Q535Q 0.28 TCGA-EE-A2M5-06 8 87616323 87616323 G A CNGB3 Silent p.I593I 0.26 TCGA-EE-A2M5-06 8 87683197 87683197 G A CNGB3 Silent p.S156S 0.21 TCGA-EE-A2M5-06 8 93003912 93003912 G A RUNX1T1 Nonsense_Mutation p.R327* 0.33 TCGA-EE-A2M5-06 8 95500960 95500960 G A KIAA1429 Missense_Mutation p.R1805C 0.33 deleterious(0) possibly_damaging(0.835) TCGA-EE-A2M5-06 8 95658469 95658469 C T ESRP1 Missense_Mutation p.S150L 0.32 tolerated(0.05) benign(0.19) TCGA-EE-A2M5-06 8 95680343 95680343 T A ESRP1 Missense_Mutation p.D366E 0.32 deleterious(0) probably_damaging(0.934) TCGA-EE-A2M5-06 8 95848801 95848801 C T INTS8 Missense_Mutation p.S268L 0.30 tolerated(0.45) benign(0.001) TCGA-EE-A2M5-06 8 95892477 95892477 T G CCNE2 3'UTR 0.33 TCGA-EE-A2M5-06 8 96044253 96044253 C T NDUFAF6 Silent p.S76S 0.27 TCGA-EE-A2M5-06 8 99057237 99057237 G A RPL30 Missense_Mutation p.T34I 0.32 deleterious(0.03) benign(0.271) TCGA-EE-A2M5-06 9 101258772 101258772 G A GABBR2 Silent p.L219L 0.29 TCGA-EE-A2M5-06 9 101594134 101594134 C T GALNT12 Missense_Mutation p.S271F 0.26 deleterious(0.01) possibly_damaging(0.866) TCGA-EE-A2M5-06 9 101981082 101981082 G A ALG2 Missense_Mutation p.R129W 0.20 deleterious(0.01) possibly_damaging(0.773) TCGA-EE-A2M5-06 9 104048505 104048505 C T LPPR1 Silent p.I124I 0.40 TCGA-EE-A2M5-06 9 1056231 1056231 C T DMRT2 Missense_Mutation p.P215L 0.35 deleterious(0.02) benign(0.114) TCGA-EE-A2M5-06 9 107332281 107332281 C T OR13C8 Missense_Mutation p.A278V 0.33 deleterious(0.02) benign(0.113) TCGA-EE-A2M5-06 9 107332282 107332282 C T OR13C8 Silent p.A278A 0.33 TCGA-EE-A2M5-06 9 107379931 107379931 C T OR13C9 Missense_Mutation p.M185I 0.31 deleterious(0) benign(0.17) TCGA-EE-A2M5-06 9 107457338 107457338 A G OR13D1 Silent p.E212E 0.33 TCGA-EE-A2M5-06 9 109691436 109691436 C T ZNF462 Missense_Mutation p.P1748L 0.35 possibly_damaging(0.636) TCGA-EE-A2M5-06 9 111617555 111617555 G A ACTL7B Missense_Mutation p.T219I 0.25 tolerated(1) benign(0.003) TCGA-EE-A2M5-06 9 111665163 111665163 G A IKBKAP Missense_Mutation p.P604S 0.21 deleterious(0.04) possibly_damaging(0.864) TCGA-EE-A2M5-06 9 113194893 113194893 A T SVEP1 Silent p.P1694P 0.35 TCGA-EE-A2M5-06 9 114206667 114206667 G A KIAA0368 Silent p.S265S 0.46 TCGA-EE-A2M5-06 9 114206668 114206668 G A KIAA0368 Missense_Mutation p.S265F 0.47 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M5-06 9 116045700 116045700 C A PRPF4 Missense_Mutation p.H199N 0.26 tolerated(0.47) benign(0.001) TCGA-EE-A2M5-06 9 116345827 116345827 C T RGS3 Missense_Mutation p.P712L 0.35 deleterious_low_confidence(0.01) benign(0.02) TCGA-EE-A2M5-06 9 116721 116721 G A FOXD4 3'UTR 0.13 TCGA-EE-A2M5-06 9 116854257 116854257 C T KIF12 Missense_Mutation p.A476T 0.32 tolerated_low_confidence(0.17) benign(0.025) TCGA-EE-A2M5-06 9 116856469 116856469 C T KIF12 Silent p.E297E 0.20 TCGA-EE-A2M5-06 9 117139684 117139684 C T AKNA Missense_Mutation p.E135K 0.40 tolerated(0.07) benign(0.021) TCGA-EE-A2M5-06 9 118974017 118974017 G A PAPPA Missense_Mutation p.R575Q 0.42 deleterious(0.01) possibly_damaging(0.553) TCGA-EE-A2M5-06 9 119065205 119065205 C T PAPPA Silent p.I1041I 0.35 TCGA-EE-A2M5-06 9 120475362 120475362 C A TLR4 Missense_Mutation p.T319N 0.43 tolerated(0.31) benign(0.001) TCGA-EE-A2M5-06 9 121929335 121929335 G A BRINP1 3'UTR 0.23 TCGA-EE-A2M5-06 9 124535734 124535734 G A DAB2IP Missense_Mutation p.G948E 0.55 tolerated(0.1) possibly_damaging(0.853) TCGA-EE-A2M5-06 9 124535735 124535735 G A DAB2IP Silent p.G948G 0.50 TCGA-EE-A2M5-06 9 125140808 125140808 A T PTGS1 Missense_Mutation p.N103I 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 125152536 125152536 G A PTGS1 Silent p.R452R 0.37 TCGA-EE-A2M5-06 9 125273939 125273939 C T OR1J2 Missense_Mutation p.P287S 0.27 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-EE-A2M5-06 9 125682045 125682045 A G ZBTB26 Missense_Mutation p.F57L 0.43 deleterious(0) probably_damaging(0.973) TCGA-EE-A2M5-06 9 126439053 126439053 G A DENND1A Silent p.F106F 0.38 TCGA-EE-A2M5-06 9 127651725 127651725 G A GOLGA1 Nonsense_Mutation p.Q530* 0.26 TCGA-EE-A2M5-06 9 127651726 127651726 G A GOLGA1 Silent p.L529L 0.27 TCGA-EE-A2M5-06 9 129974488 129974488 C T RALGPS1 Silent p.T442T 0.21 TCGA-EE-A2M5-06 9 130279140 130279140 G A FAM129B Silent p.I323I 0.25 TCGA-EE-A2M5-06 9 130688150 130688150 G A PIP5KL1 Silent p.N253N 0.30 TCGA-EE-A2M5-06 9 130985128 130985128 C T DNM1 Silent p.I395I 0.36 TCGA-EE-A2M5-06 9 132484566 132484566 G A PRRX2 Missense_Mutation p.A233T 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M5-06 9 133556642 133556642 C T PRDM12 Silent p.F230F 0.28 TCGA-EE-A2M5-06 9 133799745 133799745 C T FIBCD1 Silent p.V197V 0.32 TCGA-EE-A2M5-06 9 133911687 133911687 G A LAMC3 Missense_Mutation p.R315Q 0.23 deleterious(0) probably_damaging(0.981) TCGA-EE-A2M5-06 9 133911688 133911688 G A LAMC3 Silent p.R315R 0.24 TCGA-EE-A2M5-06 9 134025795 134025795 G A NUP214 Missense_Mutation p.E709K 0.27 possibly_damaging(0.859) TCGA-EE-A2M5-06 9 134136202 134136202 C T FAM78A 3'UTR 0.31 TCGA-EE-A2M5-06 9 135203954 135203959 CACGGG T SETX Nonsense_Mutation p.S1009* 0.21 TCGA-EE-A2M5-06 9 135374806 135374806 G A C9orf171 Missense_Mutation p.E151K 0.28 tolerated(0.57) benign(0.029) TCGA-EE-A2M5-06 9 135779089 135779089 G A TSC1 Silent p.L719L 0.25 TCGA-EE-A2M5-06 9 135946607 135946607 C T CEL Missense_Mutation p.P576L 0.22 deleterious(0.01) benign(0.14) TCGA-EE-A2M5-06 9 136507353 136507353 G A DBH Missense_Mutation p.G171R 0.26 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2M5-06 9 137660267 137660267 G A COL5A1 Silent p.G748G 0.20 TCGA-EE-A2M5-06 9 137717665 137717665 G A COL5A1 Missense_Mutation p.G1661E 0.38 unknown(0) TCGA-EE-A2M5-06 9 138589364 138589364 G A SOHLH1 Missense_Mutation p.S152F 0.26 deleterious(0) probably_damaging(0.919) TCGA-EE-A2M5-06 9 138662853 138662853 G A KCNT1 Silent p.E640E 0.23 TCGA-EE-A2M5-06 9 139751484 139751484 C T MAMDC4 Missense_Mutation p.P655S 0.19 tolerated(0.06) possibly_damaging(0.536) TCGA-EE-A2M5-06 9 139917473 139917473 G C ABCA2 Silent p.A65A 0.30 TCGA-EE-A2M5-06 9 18622265 18622265 G A ADAMTSL1 Missense_Mutation p.G167R 0.57 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M5-06 9 20990235 20990235 T C FOCAD Silent p.N1706N 0.44 TCGA-EE-A2M5-06 9 21367828 21367828 C T IFNA13 Missense_Mutation p.G61E 0.41 tolerated(0.27) benign(0.064) TCGA-EE-A2M5-06 9 21971173 21971186 AGCTCCGCCACTCG - CDKN2A Frame_Shift_Del p.R58Afs*57 0.44 TCGA-EE-A2M5-06 9 2651472 2651472 C T VLDLR Missense_Mutation p.S770L 0.24 tolerated(0.09) benign(0) TCGA-EE-A2M5-06 9 32572894 32572894 G A NDUFB6 Silent p.S55S 0.26 TCGA-EE-A2M5-06 9 32572895 32572895 G A NDUFB6 Missense_Mutation p.S55F 0.27 tolerated(0.07) benign(0.033) TCGA-EE-A2M5-06 9 32632307 32632307 G A TAF1L Silent p.L1091L 0.45 TCGA-EE-A2M5-06 9 33295248 33295248 C T NFX1 Missense_Mutation p.L286F 0.20 tolerated(0.43) benign(0.002) TCGA-EE-A2M5-06 9 34655248 34655248 C T IL11RA Silent p.L12L 0.56 TCGA-EE-A2M5-06 9 35044975 35044975 G A C9orf131 Nonsense_Mutation p.W783* 0.42 TCGA-EE-A2M5-06 9 35091309 35091309 A G PIGO Missense_Mutation p.F859L 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2M5-06 9 35380572 35380572 C T UNC13B Silent p.F688F 0.42 TCGA-EE-A2M5-06 9 35380573 35380573 C T UNC13B Missense_Mutation p.L689F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 35618284 35618284 G A CD72 Missense_Mutation p.T6I 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 35681071 35681071 G A CA9 3'UTR 0.20 TCGA-EE-A2M5-06 9 35685713 35685713 G A TPM2 Missense_Mutation p.A102V 0.43 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A2M5-06 9 35705810 35705810 G A TLN1 Silent p.F1850F 0.38 TCGA-EE-A2M5-06 9 35707805 35707805 G A TLN1 Missense_Mutation p.P1519S 0.24 deleterious(0) benign(0.023) TCGA-EE-A2M5-06 9 35869612 35869612 T G OR13J1 Missense_Mutation p.K263Q 0.22 deleterious(0.04) benign(0.125) TCGA-EE-A2M5-06 9 37746220 37746220 C T FRMPD1 Silent p.S1397S 0.52 TCGA-EE-A2M5-06 9 37746221 37746221 C T FRMPD1 Missense_Mutation p.H1398Y 0.52 tolerated(0.56) probably_damaging(0.926) TCGA-EE-A2M5-06 9 39078429 39078429 C T CNTNAP3 Missense_Mutation p.G1233E 0.26 tolerated(0.63) possibly_damaging(0.558) TCGA-EE-A2M5-06 9 39149935 39149935 G A CNTNAP3 Missense_Mutation p.P506L 0.20 tolerated(0.12) benign(0.072) TCGA-EE-A2M5-06 9 406929 406929 G A DOCK8 Splice_Site p.X1131_splice 0.20 TCGA-EE-A2M5-06 9 40705656 40705656 C T SPATA31A3 Missense_Mutation p.P1105S 0.25 tolerated(0.35) probably_damaging(0.986) TCGA-EE-A2M5-06 9 432316 432316 C T DOCK8 Missense_Mutation p.P1593S 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2M5-06 9 5044441 5044441 G A JAK2 Missense_Mutation p.R130K 0.39 tolerated(1) benign(0.076) TCGA-EE-A2M5-06 9 5797900 5797900 G A ERMP1 Missense_Mutation p.S768F 0.24 tolerated(0.22) benign(0.035) TCGA-EE-A2M5-06 9 5968635 5968635 G A KIAA2026 Silent p.P532P 0.39 TCGA-EE-A2M5-06 9 6328868 6328868 A G TPD52L3 Silent p.K91K 0.38 TCGA-EE-A2M5-06 9 71628484 71628484 G A PRKACG Silent p.I175I 0.47 TCGA-EE-A2M5-06 9 72130931 72130931 C T APBA1 Missense_Mutation p.G399E 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.651) TCGA-EE-A2M5-06 9 72520940 72520940 G A C9orf135 Missense_Mutation p.G193D 0.30 tolerated(0.71) benign(0.372) TCGA-EE-A2M5-06 9 72724680 72724680 C T MAMDC2 Silent p.I155I 0.32 TCGA-EE-A2M5-06 9 72892225 72892226 GG C SMC5 Splice_Site p.X127_splice 0.41 TCGA-EE-A2M5-06 9 73167918 73167918 C T TRPM3 Nonsense_Mutation p.W1127* 0.34 TCGA-EE-A2M5-06 9 74319652 74319652 T C TMEM2 Missense_Mutation p.N1018S 0.34 tolerated(0.23) benign(0) TCGA-EE-A2M5-06 9 74345118 74345118 C T TMEM2 Missense_Mutation p.D609N 0.38 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M5-06 9 74856215 74856215 G A GDA Splice_Site p.X379_splice 0.21 TCGA-EE-A2M5-06 9 77377950 77377950 C T TRPM6 Missense_Mutation p.D1213N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 78842459 78842459 G A PCSK5 Silent p.E889E 0.27 TCGA-EE-A2M5-06 9 80880377 80880377 C T CEP78 Missense_Mutation p.P573L 0.50 tolerated(0.25) benign(0) TCGA-EE-A2M5-06 9 82333708 82333708 G A TLE4 Missense_Mutation p.G471E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 8484171 8484171 C T PTPRD Missense_Mutation p.D1121N 0.36 tolerated(0.05) probably_damaging(0.993) TCGA-EE-A2M5-06 9 8484184 8484184 C T PTPRD Silent p.G1116G 0.19 TCGA-EE-A2M5-06 9 8518111 8518111 C T PTPRD Missense_Mutation p.R427Q 0.20 tolerated(0.1) probably_damaging(0.995) TCGA-EE-A2M5-06 9 8518298 8518298 C T PTPRD Missense_Mutation p.E365K 0.34 tolerated(0.33) probably_damaging(0.996) TCGA-EE-A2M5-06 9 8524996 8524996 C T PTPRD Missense_Mutation p.G203E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 9 85607821 85607821 C T RASEF Missense_Mutation p.M680I 0.25 deleterious(0) possibly_damaging(0.53) TCGA-EE-A2M5-06 9 87339159 87339159 G A NTRK2 Silent p.Q247Q 0.22 TCGA-EE-A2M5-06 9 88916314 88916314 G A ZCCHC6 Missense_Mutation p.L1433F 0.33 tolerated_low_confidence(0.32) benign(0.005) TCGA-EE-A2M5-06 9 88916315 88916315 G A ZCCHC6 Silent p.I1432I 0.32 TCGA-EE-A2M5-06 9 89763693 89763693 C T C9orf170 Silent p.L16L 0.35 TCGA-EE-A2M5-06 9 90500278 90500278 G A SPATA31E1 Silent p.V292V 0.18 TCGA-EE-A2M5-06 9 91262548 91262548 C T RP13-60M5.2 RNA 0.44 TCGA-EE-A2M5-06 9 91262549 91262549 C T RP13-60M5.2 RNA 0.43 TCGA-EE-A2M5-06 9 92008487 92008487 G A SEMA4D Silent p.S166S 0.29 TCGA-EE-A2M5-06 9 95086441 95086441 C T NOL8 Translation_Start_Site p.M1? 0.21 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A2M5-06 9 990519 990519 G A DMRT3 Silent p.G311G 0.16 TCGA-EE-A2M5-06 X 100403133 100403133 G T CENPI Missense_Mutation p.V693F 0.62 tolerated(0.08) benign(0.209) TCGA-EE-A2M5-06 X 100808124 100808124 C T ARMCX1 Nonsense_Mutation p.Q71* 0.67 TCGA-EE-A2M5-06 X 101381781 101381781 G A TCEAL2 5'UTR 0.48 TCGA-EE-A2M5-06 X 101396221 101396221 C T TCEAL6 Missense_Mutation p.G28E 0.60 tolerated(0.14) benign(0.073) TCGA-EE-A2M5-06 X 10176170 10176170 C T CLCN4 Missense_Mutation p.P310L 0.63 deleterious(0.02) possibly_damaging(0.766) TCGA-EE-A2M5-06 X 105450200 105450200 G A MUM1L1 Missense_Mutation p.E259K 0.53 tolerated(0.19) benign(0.001) TCGA-EE-A2M5-06 X 105450534 105450534 A T MUM1L1 Missense_Mutation p.D370V 0.73 tolerated(0.12) possibly_damaging(0.656) TCGA-EE-A2M5-06 X 106845889 106845889 G A FRMPD3 Silent p.R1573R 0.52 TCGA-EE-A2M5-06 X 110654098 110654098 T A DCX Missense_Mutation p.E35D 0.61 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M5-06 X 112048297 112048297 C T AMOT Missense_Mutation p.E552K 0.62 unknown(0) TCGA-EE-A2M5-06 X 114869286 114869286 C T PLS3 Silent p.L226L 0.67 TCGA-EE-A2M5-06 X 115586147 115586147 G A SLC6A14 Missense_Mutation p.G470E 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M5-06 X 122756988 122756988 G A THOC2 Missense_Mutation p.S1217F 0.63 deleterious(0.02) benign(0.264) TCGA-EE-A2M5-06 X 123654409 123654409 C T TENM1 Missense_Mutation p.D1087N 0.72 tolerated(0.27) benign(0.168) TCGA-EE-A2M5-06 X 129498759 129498759 C T SLC25A14 Intron 0.54 TCGA-EE-A2M5-06 X 130409619 130409619 C T IGSF1 Missense_Mutation p.G1011E 0.50 tolerated(0.88) benign(0.012) TCGA-EE-A2M5-06 X 130678879 130678879 G A OR13H1 Missense_Mutation p.G278R 0.62 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2M5-06 X 13337192 13337192 C T ATXN3L Missense_Mutation p.E288K 0.65 deleterious(0.04) probably_damaging(0.927) TCGA-EE-A2M5-06 X 135453592 135453592 C T GPR112 Missense_Mutation p.S2501L 0.68 tolerated(0.06) benign(0.257) TCGA-EE-A2M5-06 X 13764499 13764499 C T OFD1 Silent p.F193F 0.75 TCGA-EE-A2M5-06 X 140786537 140786537 C T SPANXD Missense_Mutation p.G9E 0.55 deleterious(0.01) possibly_damaging(0.709) TCGA-EE-A2M5-06 X 140994556 140994556 T A MAGEC1 Missense_Mutation p.L456M 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-EE-A2M5-06 X 140995068 140995068 G A MAGEC1 Silent p.Q626Q 0.61 TCGA-EE-A2M5-06 X 140995424 140995424 G A MAGEC1 Missense_Mutation p.S745N 0.64 tolerated_low_confidence(0.17) benign(0.213) TCGA-EE-A2M5-06 X 140995859 140995859 C T MAGEC1 Missense_Mutation p.S890F 0.58 deleterious(0) unknown(0) TCGA-EE-A2M5-06 X 14748587 14748587 G A GLRA2 Missense_Mutation p.E447K 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2M5-06 X 148579655 148579655 G A IDS Missense_Mutation p.P20S 0.21 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2M5-06 X 150840119 150840119 G A PASD1 Silent p.Q435Q 0.52 TCGA-EE-A2M5-06 X 150912081 150912081 G A CNGA2 Missense_Mutation p.G369E 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 X 151131055 151131055 C T GABRE Missense_Mutation p.D135N 0.61 tolerated(0.42) benign(0.005) TCGA-EE-A2M5-06 X 151303507 151303507 G A MAGEA10 Missense_Mutation p.P196S 0.54 deleterious(0) probably_damaging(0.958) TCGA-EE-A2M5-06 X 151336712 151336712 G A GABRA3 Silent p.I489I 0.46 TCGA-EE-A2M5-06 X 151896310 151896310 C T MAGEA12 3'Flank 0.49 TCGA-EE-A2M5-06 X 152482055 152482055 C T MAGEA1 3'UTR 0.59 TCGA-EE-A2M5-06 X 152482275 152482275 C T MAGEA1 Missense_Mutation p.E246K 0.61 deleterious(0.04) possibly_damaging(0.489) TCGA-EE-A2M5-06 X 15311435 15311435 C T ASB11 Missense_Mutation p.G126E 0.68 deleterious(0.03) possibly_damaging(0.685) TCGA-EE-A2M5-06 X 15311436 15311436 C T ASB11 Missense_Mutation p.G126R 0.71 tolerated(0.07) possibly_damaging(0.817) TCGA-EE-A2M5-06 X 153664093 153664093 C T ATP6AP1 Silent p.S423S 0.68 TCGA-EE-A2M5-06 X 154159078 154159078 C T F8 Missense_Mutation p.R996K 0.72 tolerated(0.77) benign(0.003) TCGA-EE-A2M5-06 X 1584669 1584669 G A P2RY8 Silent p.I261I 0.16 TCGA-EE-A2M5-06 X 17744107 17744107 C T NHS Silent p.H606H 0.62 TCGA-EE-A2M5-06 X 18283762 18283762 C T SCML2 Silent p.R297R 0.59 TCGA-EE-A2M5-06 X 19443746 19443746 C T MAP3K15 Missense_Mutation p.D448N 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 X 26157665 26157665 C T MAGEB18 Missense_Mutation p.T188I 0.64 tolerated(0.13) benign(0.01) TCGA-EE-A2M5-06 X 26212270 26212270 C T MAGEB6 Missense_Mutation p.P103S 0.72 tolerated(0.49) benign(0.001) TCGA-EE-A2M5-06 X 3240713 3240713 G A MXRA5 Missense_Mutation p.P1005S 0.57 tolerated(0.1) benign(0.003) TCGA-EE-A2M5-06 X 3241150 3241150 G A MXRA5 Missense_Mutation p.S859F 0.60 deleterious(0.03) benign(0.088) TCGA-EE-A2M5-06 X 3241234 3241234 G A MXRA5 Missense_Mutation p.P831L 0.59 deleterious(0.03) benign(0.154) TCGA-EE-A2M5-06 X 34149328 34149328 C T FAM47A Silent p.E356E 0.72 TCGA-EE-A2M5-06 X 37026872 37026872 C T FAM47C Missense_Mutation p.P130L 0.69 deleterious(0) benign(0.39) TCGA-EE-A2M5-06 X 37026888 37026888 C T FAM47C Silent p.P135P 0.68 TCGA-EE-A2M5-06 X 38525469 38525469 C T TSPAN7 Missense_Mutation p.P59L 0.71 deleterious(0.03) possibly_damaging(0.802) TCGA-EE-A2M5-06 X 47432303 47432303 C G SYN1 Missense_Mutation p.R693P 0.63 deleterious(0) possibly_damaging(0.453) TCGA-EE-A2M5-06 X 48046244 48046244 G A SSX5 3'UTR 0.55 TCGA-EE-A2M5-06 X 53440018 53440018 T G SMC1A Missense_Mutation p.Y229S 0.48 deleterious(0) probably_damaging(0.99) TCGA-EE-A2M5-06 X 57458368 57458368 A C FAAH2 Missense_Mutation p.E338D 0.50 deleterious(0.04) possibly_damaging(0.67) TCGA-EE-A2M5-06 X 62917014 62917014 G A ARHGEF9 Silent p.F184F 0.83 TCGA-EE-A2M5-06 X 65479985 65479985 G A HEPH Missense_Mutation p.G1081E 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A2M5-06 X 69459607 69459607 A C AWAT1 Missense_Mutation p.T219P 0.67 deleterious(0) probably_damaging(0.933) TCGA-EE-A2M5-06 X 70321417 70321417 C T FOXO4 Missense_Mutation p.P446L 0.77 tolerated(0.55) benign(0.008) TCGA-EE-A2M5-06 X 7267936 7267936 C T STS Silent p.S462S 0.57 TCGA-EE-A2M5-06 X 73042686 73042686 C T XIST RNA 0.74 TCGA-EE-A2M5-06 X 77529270 77529270 C - CYSLTR1 Intron 0.31 TCGA-EE-A2M5-06 X 78427255 78427255 C T GPR174 Missense_Mutation p.P251S 0.46 deleterious(0.02) probably_damaging(1) TCGA-EE-A2M5-06 X 79286391 79286391 G C TBX22 Missense_Mutation p.Q448H 0.54 tolerated(0.7) benign(0.004) TCGA-EE-A2M5-06 X 79286392 79286392 T C TBX22 Missense_Mutation p.S449P 0.55 tolerated(0.1) benign(0.002) TCGA-EE-A2M5-06 X 84560879 84560879 T C POF1B Missense_Mutation p.K452R 0.52 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2M5-06 X 84634333 84634333 G A POF1B Missense_Mutation p.P43S 0.70 deleterious_low_confidence(0.02) possibly_damaging(0.882) TCGA-EE-A2M5-06 X 8995992 8995992 G A FAM9B Nonsense_Mutation p.Q137* 0.50 TCGA-EE-A2M5-06 X 90691122 90691122 C T PABPC5 Silent p.F182F 0.39 TCGA-EE-A2M5-06 X 90691123 90691123 C T PABPC5 Missense_Mutation p.P183S 0.39 deleterious(0.04) possibly_damaging(0.468) TCGA-EE-A2M5-06 X 9863835 9863835 C T SHROOM2 Silent p.T629T 0.54 TCGA-EE-A2M5-06 Y 16734175 16734175 G A NLGN4Y Missense_Mutation p.R59K 0.21 tolerated(0.51) benign(0.001) TCGA-EE-A2M5-06 Y 16952312 16952312 C T NLGN4Y Missense_Mutation p.P541S 0.30 deleterious(0.03) benign(0.317) TCGA-EE-A2M5-06 Y 4925194 4925194 A C PCDH11Y Missense_Mutation p.E110D 0.20 tolerated(1) benign(0.381) TCGA-EE-A2M6-06 10 102753064 102753064 C T C10orf2 Missense_Mutation p.P618S 0.45 tolerated(0.07) benign(0.271) TCGA-EE-A2M6-06 10 105350068 105350068 C T NEURL1 Missense_Mutation p.A555V 0.58 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A2M6-06 10 106074463 106074463 C T ITPRIP Nonsense_Mutation p.W449* 0.57 TCGA-EE-A2M6-06 10 116075421 116075421 G A AFAP1L2 Silent p.I170I 0.38 TCGA-EE-A2M6-06 10 121429450 121429450 C T BAG3 Nonsense_Mutation p.R90* 0.37 TCGA-EE-A2M6-06 10 124348527 124348527 C T DMBT1 Silent p.V617V 0.39 TCGA-EE-A2M6-06 10 124380647 124380647 C T DMBT1 Nonsense_Mutation p.R1658* 0.44 TCGA-EE-A2M6-06 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 10 124797320 124797320 C T ACADSB Missense_Mutation p.S87L 0.41 deleterious(0.05) possibly_damaging(0.653) TCGA-EE-A2M6-06 10 127520114 127520114 C T BCCIP Silent p.L179L 0.45 TCGA-EE-A2M6-06 10 133107541 133107541 G A TCERG1L Missense_Mutation p.P122S 0.26 deleterious(0) possibly_damaging(0.449) TCGA-EE-A2M6-06 10 134999585 134999585 G A KNDC1 Missense_Mutation p.G245S 0.62 tolerated(0.15) benign(0.049) TCGA-EE-A2M6-06 10 135032453 135032453 C T KNDC1 Missense_Mutation p.S1599F 0.70 tolerated(0.06) probably_damaging(0.932) TCGA-EE-A2M6-06 10 37430899 37430899 T G ANKRD30A Silent p.P302P 0.30 TCGA-EE-A2M6-06 10 46959905 46959905 A G SYT15 3'Flank 0.43 TCGA-EE-A2M6-06 10 50530821 50530821 G A C10orf71 Silent p.R77R 0.38 TCGA-EE-A2M6-06 10 50828603 50828603 C T CHAT Silent p.S214S 0.49 TCGA-EE-A2M6-06 10 50854651 50854651 A C CHAT Silent p.A404A 0.40 TCGA-EE-A2M6-06 10 54528045 54528045 C T MBL2 Missense_Mutation p.G200E 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2M6-06 10 55591221 55591221 C T PCDH15 Silent p.L1352L 0.20 TCGA-EE-A2M6-06 10 55719528 55719528 G A PCDH15 Missense_Mutation p.P1029L 0.57 deleterious(0.01) benign(0.274) TCGA-EE-A2M6-06 10 68857449 68857449 G A LRRTM3 Silent p.T547T 0.42 TCGA-EE-A2M6-06 10 72505062 72505062 G A ADAMTS14 Missense_Mutation p.V758M 0.35 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2M6-06 10 85981699 85981699 C T LRIT2 Missense_Mutation p.G544R 0.52 tolerated(0.66) benign(0.001) TCGA-EE-A2M6-06 10 96602610 96602610 G A CYP2C19 Silent p.E326E 0.41 TCGA-EE-A2M6-06 10 96698470 96698470 C T CYP2C9 Missense_Mutation p.L11F 0.36 tolerated(0.08) unknown(0) TCGA-EE-A2M6-06 10 97916862 97916862 C T ZNF518A RNA 0.49 TCGA-EE-A2M6-06 10 98743944 98743944 C G C10orf12 Missense_Mutation p.P933A 0.41 tolerated(1) possibly_damaging(0.778) TCGA-EE-A2M6-06 11 101834437 101834437 C T KIAA1377 Missense_Mutation p.H891Y 0.47 tolerated(0.52) benign(0.007) TCGA-EE-A2M6-06 11 10503703 10503703 C T AMPD3 Missense_Mutation p.P183S 0.63 tolerated(0.13) possibly_damaging(0.776) TCGA-EE-A2M6-06 11 10503704 10503704 C T AMPD3 Missense_Mutation p.P183L 0.63 tolerated(0.19) possibly_damaging(0.656) TCGA-EE-A2M6-06 11 111156735 111156735 G T C11orf53 Missense_Mutation p.G223W 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M6-06 11 113103514 113103514 G A NCAM1 Silent p.L549L 0.19 TCGA-EE-A2M6-06 11 113802525 113802525 G A HTR3B Missense_Mutation p.E102K 0.11 tolerated(0.14) benign(0.428) TCGA-EE-A2M6-06 11 114168749 114168749 C T NNMT Silent p.S77S 0.64 TCGA-EE-A2M6-06 11 116692476 116692476 C T APOA4 Missense_Mutation p.E100K 0.59 deleterious(0.04) benign(0.328) TCGA-EE-A2M6-06 11 119025586 119025586 T G ABCG4 Missense_Mutation p.V216G 0.07 deleterious(0) probably_damaging(0.934) TCGA-EE-A2M6-06 11 122944149 122944149 C T CLMP 3'UTR 0.67 TCGA-EE-A2M6-06 11 123777259 123777259 G A OR8D4 Missense_Mutation p.G41R 0.67 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2M6-06 11 124120862 124120862 G A OR8G1 Missense_Mutation p.G147E 0.67 tolerated_low_confidence(0.12) benign(0.152) TCGA-EE-A2M6-06 11 124748575 124748575 G A ROBO3 Missense_Mutation p.R1139K 0.89 deleterious(0.04) benign(0.013) TCGA-EE-A2M6-06 11 128840274 128840274 G A ARHGAP32 Missense_Mutation p.P1598S 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 11 1629291 1629291 C T KRTAP5-3 Missense_Mutation p.G109R 0.30 tolerated(0.09) unknown(0) TCGA-EE-A2M6-06 11 16876447 16876447 G A PLEKHA7 Silent p.L171L 0.56 TCGA-EE-A2M6-06 11 27520153 27520153 C T LIN7C 3'UTR 0.57 TCGA-EE-A2M6-06 11 34181535 34181535 T C ABTB2 Missense_Mutation p.K842E 0.24 tolerated(0.06) benign(0.438) TCGA-EE-A2M6-06 11 34501694 34501694 C T ELF5 3'UTR 0.67 TCGA-EE-A2M6-06 11 3781771 3781771 A G NUP98 Missense_Mutation p.F391S 0.67 deleterious(0) possibly_damaging(0.818) TCGA-EE-A2M6-06 11 44297060 44297060 G A ALX4 Silent p.A205A 0.21 TCGA-EE-A2M6-06 11 4510401 4510401 G A OR52K1 Missense_Mutation p.D91N 0.58 tolerated(0.08) benign(0.003) TCGA-EE-A2M6-06 11 4903905 4903905 G A OR51T1 Missense_Mutation p.S286N 0.18 deleterious(0.03) possibly_damaging(0.779) TCGA-EE-A2M6-06 11 5068174 5068174 C T OR52J3 Missense_Mutation p.S140F 0.13 deleterious(0) possibly_damaging(0.555) TCGA-EE-A2M6-06 11 5153778 5153778 G A OR52A5 Missense_Mutation p.P32L 0.18 deleterious(0.02) benign(0.157) TCGA-EE-A2M6-06 11 5462531 5462531 C T OR51I1 Missense_Mutation p.D72N 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.64 tolerated_low_confidence(0.06) benign(0.19) TCGA-EE-A2M6-06 11 55418383 55418383 G A OR4S2 Missense_Mutation p.E2K 0.34 tolerated(0.18) benign(0.005) TCGA-EE-A2M6-06 11 5566539 5566539 G A OR52H1 Missense_Mutation p.S72F 0.58 deleterious(0.01) possibly_damaging(0.866) TCGA-EE-A2M6-06 11 56019898 56019898 C T OR5T3 Silent p.L75L 0.25 TCGA-EE-A2M6-06 11 57003516 57003516 G A APLNR Silent p.T321T 0.55 TCGA-EE-A2M6-06 11 57099631 57099631 G A SSRP1 Silent p.F332F 0.58 TCGA-EE-A2M6-06 11 5906189 5906189 C T OR52E4 Missense_Mutation p.L223F 0.37 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2M6-06 11 60637865 60637865 G A ZP1 Missense_Mutation p.R248K 0.49 tolerated(0.94) benign(0.004) TCGA-EE-A2M6-06 11 61633112 61633112 C T FADS2 Missense_Mutation p.S429F 0.20 deleterious(0) benign(0.097) TCGA-EE-A2M6-06 11 6292273 6292273 G A CCKBR Missense_Mutation p.E282K 0.18 tolerated(0.53) benign(0.102) TCGA-EE-A2M6-06 11 63141131 63141131 C T SLC22A9 Silent p.F174F 0.79 TCGA-EE-A2M6-06 11 64537796 64537796 C T SF1 Silent p.E232E 0.11 TCGA-EE-A2M6-06 11 64812189 64812189 C A SAC3D1 Missense_Mutation p.S356Y 0.61 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-EE-A2M6-06 11 65123630 65123630 C T TIGD3 Silent p.F117F 0.69 TCGA-EE-A2M6-06 11 66190383 66190383 A G NPAS4 Silent p.K223K 0.48 TCGA-EE-A2M6-06 11 66358272 66358272 C A CCDC87 Nonsense_Mutation p.E739* 0.28 TCGA-EE-A2M6-06 11 66358614 66358614 C A CCDC87 Missense_Mutation p.V625L 0.35 tolerated(0.42) benign(0.006) TCGA-EE-A2M6-06 11 68525182 68525182 C T CPT1A Missense_Mutation p.G751E 0.58 deleterious(0) probably_damaging(0.955) TCGA-EE-A2M6-06 11 70331599 70331599 C T SHANK2 Missense_Mutation p.R1601K 0.35 tolerated(0.11) benign(0.067) TCGA-EE-A2M6-06 11 71174477 71174477 G A NADSYN1 Splice_Site p.X88_splice 0.29 TCGA-EE-A2M6-06 11 73625470 73625470 T C PAAF1 Missense_Mutation p.V247A 0.59 deleterious(0) benign(0.061) TCGA-EE-A2M6-06 11 73785332 73785332 G A C2CD3 Silent p.I1639I 0.55 TCGA-EE-A2M6-06 11 78380018 78380018 T A TENM4 Missense_Mutation p.I2458F 0.62 deleterious(0) benign(0.288) TCGA-EE-A2M6-06 11 9009825 9009825 G A NRIP3 Missense_Mutation p.P60L 0.66 deleterious(0) probably_damaging(0.952) TCGA-EE-A2M6-06 12 107914403 107914403 C T BTBD11 Silent p.I425I 0.84 TCGA-EE-A2M6-06 12 10954379 10954379 T G TAS2R7 Missense_Mutation p.E264A 0.46 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A2M6-06 12 111348978 111348978 A G MYL2 Missense_Mutation p.V135A 0.91 deleterious(0) benign(0.411) TCGA-EE-A2M6-06 12 112650418 112650418 C T HECTD4 Missense_Mutation p.G2355E 0.97 possibly_damaging(0.544) TCGA-EE-A2M6-06 12 113403830 113403830 C T OAS3 Silent p.A895A 0.79 TCGA-EE-A2M6-06 12 11461501 11461501 C T PRB4 Missense_Mutation p.G139E 0.39 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2M6-06 12 121416653 121416653 C T HNF1A Nonsense_Mutation p.Q28* 0.88 TCGA-EE-A2M6-06 12 121746273 121746273 G A ANAPC5 3'UTR 0.92 TCGA-EE-A2M6-06 12 124172683 124172683 C T TCTN2 Missense_Mutation p.P284S 0.92 deleterious(0) probably_damaging(0.952) TCGA-EE-A2M6-06 12 125441650 125441650 G A DHX37 Missense_Mutation p.S730F 0.89 deleterious(0) possibly_damaging(0.702) TCGA-EE-A2M6-06 12 13220139 13220139 C T KIAA1467 Nonsense_Mutation p.R351* 0.45 TCGA-EE-A2M6-06 12 18234317 18234317 T A RERGL Silent p.A142A 0.19 TCGA-EE-A2M6-06 12 21471798 21471798 C T SLCO1A2 Missense_Mutation p.M40I 0.49 deleterious(0.04) benign(0.119) TCGA-EE-A2M6-06 12 21487557 21487557 C T SLCO1A2 Missense_Mutation p.E9K 0.33 tolerated(0.34) benign(0.002) TCGA-EE-A2M6-06 12 2927111 2927111 G A ITFG2 Missense_Mutation p.G77R 0.46 deleterious(0) probably_damaging(0.988) TCGA-EE-A2M6-06 12 30827670 30827670 A T IPO8 Missense_Mutation p.D249E 0.42 tolerated(0.25) benign(0.381) TCGA-EE-A2M6-06 12 5020559 5020559 T G KCNA1 Silent p.S5S 0.23 TCGA-EE-A2M6-06 12 53345288 53345288 G A KRT18 Silent p.Q227Q 0.96 TCGA-EE-A2M6-06 12 58174204 58174204 C T METTL21B Silent p.I152I 0.92 TCGA-EE-A2M6-06 12 5848488 5848488 C T ANO2 Missense_Mutation p.E473K 0.80 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2M6-06 12 6135213 6135213 C T VWF Splice_Site p.X990_splice 0.47 TCGA-EE-A2M6-06 12 6747418 6747418 G A ACRBP 3'UTR 0.39 TCGA-EE-A2M6-06 12 69759659 69759659 A G YEATS4 Missense_Mutation p.R110G 0.81 deleterious(0) possibly_damaging(0.513) TCGA-EE-A2M6-06 12 71094984 71094984 C T PTPRR Missense_Mutation p.R376Q 0.94 deleterious(0.01) benign(0.286) TCGA-EE-A2M6-06 12 7640104 7640104 C T CD163 Missense_Mutation p.G634E 0.40 tolerated(0.74) benign(0.026) TCGA-EE-A2M6-06 12 81851624 81851624 C T PPFIA2 Missense_Mutation p.E109K 1.00 deleterious(0) probably_damaging(0.994) TCGA-EE-A2M6-06 12 82792590 82792590 C T METTL25 Missense_Mutation p.S183F 0.81 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 12 8757938 8757938 C T AICDA Silent p.G100G 0.49 TCGA-EE-A2M6-06 12 94694762 94694763 - AC PLXNC1 Frame_Shift_Ins p.G1440Tfs*6 0.49 TCGA-EE-A2M6-06 12 96389530 96389530 G A HAL Silent p.F53F 0.91 TCGA-EE-A2M6-06 13 100982855 100982855 C T PCCA Silent p.I490I 0.52 TCGA-EE-A2M6-06 13 103703678 103703678 T C SLC10A2 Silent p.G230G 0.41 TCGA-EE-A2M6-06 13 106119401 106119401 G A DAOA Splice_Site p.X15_splice 0.67 TCGA-EE-A2M6-06 13 108862892 108862893 AA - LIG4 Frame_Shift_Del p.L242Ifs*5 0.11 TCGA-EE-A2M6-06 13 114507916 114507916 C T TMEM255B Missense_Mutation p.P243L 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2M6-06 13 20024216 20024216 C T TPTE2 Missense_Mutation p.G325R 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2M6-06 13 20048194 20048194 G A TPTE2 Silent p.V84V 0.57 TCGA-EE-A2M6-06 13 20077413 20077413 G A TPTE2 5'UTR 0.26 TCGA-EE-A2M6-06 13 21557379 21557379 G A LATS2 Silent p.S822S 0.30 TCGA-EE-A2M6-06 13 22113825 22113825 T A MICU2 Nonsense_Mutation p.K121* 0.73 TCGA-EE-A2M6-06 13 23912862 23912862 G A SACS Missense_Mutation p.S1718F 0.64 benign(0.001) TCGA-EE-A2M6-06 13 28589742 28589742 C T FLT3 Missense_Mutation p.E880K 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 13 30815100 30815100 G A KATNAL1 Missense_Mutation p.H206Y 0.56 deleterious(0.02) possibly_damaging(0.898) TCGA-EE-A2M6-06 13 33261421 33261421 C T PDS5B Nonsense_Mutation p.R452* 0.56 TCGA-EE-A2M6-06 13 46357938 46357938 G A SIAH3 Silent p.I130I 0.53 TCGA-EE-A2M6-06 13 46549572 46549572 G A ZC3H13 Missense_Mutation p.R772W 0.63 unknown(0) TCGA-EE-A2M6-06 13 76374938 76374938 C T LMO7 5'UTR 0.25 TCGA-EE-A2M6-06 13 96234465 96234465 G T DZIP1 3'UTR 0.24 TCGA-EE-A2M6-06 14 101512821 101512821 C T MIR487B RNA 0.89 TCGA-EE-A2M6-06 14 102449438 102449438 G A DYNC1H1 Silent p.T348T 0.84 TCGA-EE-A2M6-06 14 106405839 106405839 G A IGHV6-1 Silent p.S45S 0.80 TCGA-EE-A2M6-06 14 107048861 107048861 C T IGHV3-53 Missense_Mutation p.M53I 0.84 deleterious_low_confidence(0.03) benign(0.109) TCGA-EE-A2M6-06 14 20344533 20344533 T C OR4K2 Missense_Mutation p.V36A 0.85 tolerated(0.12) benign(0.005) TCGA-EE-A2M6-06 14 20444070 20444070 C T OR4K15 Silent p.F131F 0.86 TCGA-EE-A2M6-06 14 22111199 22111199 G A TRAV1-2 Missense_Mutation p.G3R 0.93 deleterious(0.01) benign(0.257) TCGA-EE-A2M6-06 14 70713007 70713007 G A ADAM21P1 RNA 0.88 TCGA-EE-A2M6-06 14 73753939 73753939 C T NUMB Silent p.V178V 0.84 TCGA-EE-A2M6-06 14 74971811 74971811 G A LTBP2 Missense_Mutation p.S1415F 1.00 tolerated(0.61) possibly_damaging(0.613) TCGA-EE-A2M6-06 15 102194903 102194903 G A TARSL2 Missense_Mutation p.A764V 0.39 deleterious(0) benign(0.324) TCGA-EE-A2M6-06 15 21051294 21051294 G A POTEB2 Missense_Mutation p.P389L 0.20 tolerated(0.06) benign(0.034) TCGA-EE-A2M6-06 15 22383168 22383168 G A OR4N4 Silent p.G232G 0.22 TCGA-EE-A2M6-06 15 22709222 22709222 C T AC116165.1 5'Flank 0.15 TCGA-EE-A2M6-06 15 23932237 23932237 C T NDN Missense_Mutation p.S43N 0.52 tolerated_low_confidence(0.48) benign(0.001) TCGA-EE-A2M6-06 15 24922025 24922025 G A NPAP1 Silent p.P337P 0.46 TCGA-EE-A2M6-06 15 26026297 26026297 C T ATP10A Missense_Mutation p.E175K 0.43 deleterious(0.01) probably_damaging(0.924) TCGA-EE-A2M6-06 15 28358775 28358775 G A HERC2 Missense_Mutation p.R4655C 0.48 benign(0.165) TCGA-EE-A2M6-06 15 28358776 28358776 G A HERC2 Silent p.A4654A 0.49 TCGA-EE-A2M6-06 15 31851329 31851329 G A OTUD7A Silent p.S131S 0.57 TCGA-EE-A2M6-06 15 42363655 42363655 C T PLA2G4D Silent p.K556K 0.44 TCGA-EE-A2M6-06 15 43663577 43663577 C T TUBGCP4 Silent p.L9L 0.46 TCGA-EE-A2M6-06 15 45389836 45389836 G A DUOX2 Silent p.H1223H 0.43 TCGA-EE-A2M6-06 15 54306208 54306208 C T UNC13C Missense_Mutation p.P370S 0.41 tolerated_low_confidence(0.47) benign(0.106) TCGA-EE-A2M6-06 15 54306209 54306209 C A UNC13C Missense_Mutation p.P370Q 0.42 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-EE-A2M6-06 15 54556499 54556499 G A UNC13C Silent p.Q1194Q 0.17 TCGA-EE-A2M6-06 15 54707203 54707203 G A UNC13C Missense_Mutation p.G1624E 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2M6-06 15 58285160 58285160 C T ALDH1A2 Missense_Mutation p.G223R 0.41 deleterious(0) probably_damaging(0.984) TCGA-EE-A2M6-06 15 64204346 64204346 C T DAPK2 Silent p.L303L 0.28 TCGA-EE-A2M6-06 15 64410335 64410335 C T SNX1 Silent p.S97S 0.49 TCGA-EE-A2M6-06 15 65443233 65443233 G A CLPX Silent p.S610S 0.46 TCGA-EE-A2M6-06 15 67934802 67934802 G A MAP2K5 Intron 0.33 TCGA-EE-A2M6-06 15 68489856 68489856 C T CALML4 Missense_Mutation p.E139K 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2M6-06 15 74625049 74625049 C T CCDC33 Missense_Mutation p.P601S 0.41 tolerated(0.17) possibly_damaging(0.905) TCGA-EE-A2M6-06 15 74630948 74630948 C T CYP11A1 Silent p.R466R 0.46 TCGA-EE-A2M6-06 15 74630949 74630949 C T CYP11A1 Missense_Mutation p.R466Q 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 15 75105316 75105316 G A LMAN1L Missense_Mutation p.G41S 0.39 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A2M6-06 15 75761201 75761201 T C PTPN9 Missense_Mutation p.Y564C 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 15 78882211 78882211 T G CHRNA5 Missense_Mutation p.W160G 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 15 84685243 84685243 C T ADAMTSL3 Missense_Mutation p.P1422L 0.60 tolerated(0.86) benign(0) TCGA-EE-A2M6-06 16 10868812 10868812 C T TVP23A Silent p.V77V 0.42 TCGA-EE-A2M6-06 16 1270195 1270195 G A CACNA1H Missense_Mutation p.G2088E 0.55 tolerated(0.49) possibly_damaging(0.448) TCGA-EE-A2M6-06 16 14721147 14721147 T C PARN Missense_Mutation p.K75R 0.23 tolerated(0.38) benign(0.005) TCGA-EE-A2M6-06 16 1706227 1706227 C T CRAMP1L Missense_Mutation p.S490F 0.32 tolerated_low_confidence(0.07) probably_damaging(0.961) TCGA-EE-A2M6-06 16 18844299 18844299 C T SMG1 Missense_Mutation p.E2919K 0.39 deleterious(0.01) benign(0.142) TCGA-EE-A2M6-06 16 19468038 19468038 G A TMC5 Intron 0.51 TCGA-EE-A2M6-06 16 20386275 20386275 C T PDILT Missense_Mutation p.E184K 0.41 deleterious(0.03) possibly_damaging(0.622) TCGA-EE-A2M6-06 16 20396091 20396091 C T PDILT Silent p.G95G 0.40 TCGA-EE-A2M6-06 16 20451735 20451735 G A ACSM5 Missense_Mutation p.E576K 0.39 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2M6-06 16 2048175 2048175 C T ZNF598 3'UTR 0.14 TCGA-EE-A2M6-06 16 20996728 20996728 G A DNAH3 Silent p.L2446L 0.36 TCGA-EE-A2M6-06 16 2378514 2378514 G A ABCA3 5'UTR 0.50 TCGA-EE-A2M6-06 16 24828142 24828142 C T TNRC6A Missense_Mutation p.R1613C 0.41 tolerated(0.19) probably_damaging(0.994) TCGA-EE-A2M6-06 16 2881920 2881920 C T ZG16B Silent p.F129F 0.48 TCGA-EE-A2M6-06 16 30018394 30018394 G A DOC2A Silent p.S224S 0.34 TCGA-EE-A2M6-06 16 30794450 30794450 C A ZNF629 Missense_Mutation p.R400L 0.67 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 16 31150732 31150732 G A PRSS36 Silent p.T765T 0.38 TCGA-EE-A2M6-06 16 4559688 4559688 C A HMOX2 Silent p.P294P 0.38 TCGA-EE-A2M6-06 16 55362701 55362701 G A IRX6 Missense_Mutation p.D271N 0.63 tolerated(0.59) benign(0.076) TCGA-EE-A2M6-06 16 66997462 66997462 C T CES3 Missense_Mutation p.S119F 0.63 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2M6-06 16 66997463 66997463 C T CES3 Silent p.S119S 0.61 TCGA-EE-A2M6-06 16 67694175 67694175 C T ACD Nonsense_Mutation p.W69* 0.59 TCGA-EE-A2M6-06 16 67694176 67694176 C T ACD Nonsense_Mutation p.W69* 0.57 TCGA-EE-A2M6-06 16 69373480 69373480 C A NIP7 5'UTR 0.60 TCGA-EE-A2M6-06 16 70884483 70884483 C T HYDIN Silent p.K4173K 0.53 TCGA-EE-A2M6-06 16 70891649 70891649 G A HYDIN Missense_Mutation p.S4085F 0.25 benign(0.102) TCGA-EE-A2M6-06 16 71319742 71319742 C T CMTR2 Missense_Mutation p.E28K 0.73 tolerated(0.7) benign(0.009) TCGA-EE-A2M6-06 16 80638443 80638443 C T CDYL2 Missense_Mutation p.V455M 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 16 81095627 81095627 G A C16orf46 Silent p.S109S 0.47 TCGA-EE-A2M6-06 16 82033577 82033577 G A SDR42E1 Silent p.L107L 0.42 TCGA-EE-A2M6-06 16 84456270 84456270 C T ATP2C2 Silent p.F270F 0.43 TCGA-EE-A2M6-06 16 88958775 88958775 G A CBFA2T3 Silent p.P166P 0.39 TCGA-EE-A2M6-06 16 89865509 89865509 T C FANCA Intron 0.47 TCGA-EE-A2M6-06 17 10428832 10428832 C T MYH2 Silent p.K1491K 0.89 TCGA-EE-A2M6-06 17 10596221 10596221 G A SCO1 Missense_Mutation p.S141F 0.90 deleterious(0.03) benign(0.265) TCGA-EE-A2M6-06 17 11556195 11556195 C T DNAH9 Missense_Mutation p.P824L 0.92 benign(0.179) TCGA-EE-A2M6-06 17 11572479 11572479 G A DNAH9 Missense_Mutation p.G944S 0.90 benign(0.05) TCGA-EE-A2M6-06 17 15341424 15341424 C T CDRT4 Missense_Mutation p.R41K 0.88 tolerated(0.25) possibly_damaging(0.567) TCGA-EE-A2M6-06 17 17118316 17118316 G C FLCN Silent p.L507L 0.29 TCGA-EE-A2M6-06 17 18022072 18022072 C T MYO15A 5'UTR 0.67 TCGA-EE-A2M6-06 17 21319179 21319179 C T KCNJ12 Silent p.F175F 0.31 TCGA-EE-A2M6-06 17 36047271 36047271 G A HNF1B 3'UTR 0.96 TCGA-EE-A2M6-06 17 36361780 36361780 G A RP11-1407O15.2 Missense_Mutation p.P189S 0.29 TCGA-EE-A2M6-06 17 39254047 39254047 G A KRTAP4-8 Missense_Mutation p.S97F 0.76 deleterious(0) unknown(0) TCGA-EE-A2M6-06 17 39280212 39280212 A C KRTAP4-12 Missense_Mutation p.C55G 0.93 deleterious(0) unknown(0) TCGA-EE-A2M6-06 17 39723922 39723922 C T KRT9 Missense_Mutation p.G492E 1.00 tolerated_low_confidence(0.11) unknown(0) TCGA-EE-A2M6-06 17 48559767 48559767 C G RSAD1 Missense_Mutation p.L264V 0.80 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2M6-06 17 55079448 55079448 C T SCPEP1 Missense_Mutation p.A401V 0.87 deleterious(0.01) benign(0.41) TCGA-EE-A2M6-06 17 61627953 61627953 C T DCAF7 5'UTR 0.71 TCGA-EE-A2M6-06 17 63221400 63221400 C T RGS9 Missense_Mutation p.T563I 0.89 tolerated_low_confidence(0.13) benign(0.019) TCGA-EE-A2M6-06 17 64641630 64641630 G T PRKCA Splice_Site p.X177_splice 0.83 TCGA-EE-A2M6-06 17 67189662 67189662 A T ABCA10 Missense_Mutation p.L538Q 1.00 deleterious(0) probably_damaging(0.951) TCGA-EE-A2M6-06 17 67197686 67197686 G T ABCA10 Missense_Mutation p.S377Y 0.88 tolerated(0.56) benign(0.022) TCGA-EE-A2M6-06 17 71426687 71426687 C T SDK2 Missense_Mutation p.V516M 1.00 tolerated(0.1) benign(0.027) TCGA-EE-A2M6-06 17 73945809 73945809 G A ACOX1 Missense_Mutation p.R490C 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 17 74004282 74004282 C T EVPL Silent p.R1668R 0.75 TCGA-EE-A2M6-06 17 75190973 75190973 C T SEC14L1 Missense_Mutation p.P230L 0.80 tolerated(0.27) benign(0.001) TCGA-EE-A2M6-06 17 7530080 7530080 C T SAT2 Silent p.K112K 0.77 TCGA-EE-A2M6-06 17 79168728 79168728 G A AZI1 Silent p.A687A 0.81 TCGA-EE-A2M6-06 18 14543037 14543037 C T POTEC Missense_Mutation p.G37R 0.40 tolerated_low_confidence(0.09) probably_damaging(0.953) TCGA-EE-A2M6-06 18 21226194 21226194 C T ANKRD29 Missense_Mutation p.E64K 0.53 deleterious(0.04) probably_damaging(0.938) TCGA-EE-A2M6-06 18 28711833 28711833 G A DSC1 Intron 0.57 TCGA-EE-A2M6-06 18 28737400 28737400 G A DSC1 Silent p.F95F 0.23 TCGA-EE-A2M6-06 18 29041337 29041337 G A DSG3 Missense_Mutation p.D321N 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2M6-06 18 30260234 30260234 C T KLHL14 Missense_Mutation p.D496N 0.23 tolerated(0.07) probably_damaging(0.989) TCGA-EE-A2M6-06 18 47788448 47788448 C T CCDC11 Missense_Mutation p.D71N 0.34 tolerated(0.07) benign(0.085) TCGA-EE-A2M6-06 18 50683792 50683792 G A DCC Missense_Mutation p.R443Q 0.31 deleterious(0) probably_damaging(0.95) TCGA-EE-A2M6-06 18 52928712 52928712 C T TCF4 Silent p.G427G 0.26 TCGA-EE-A2M6-06 18 54349978 54349978 C T WDR7 Silent p.I138I 0.53 TCGA-EE-A2M6-06 18 56008928 56008928 T C NEDD4L Missense_Mutation p.S426P 0.69 tolerated(0.2) benign(0.058) TCGA-EE-A2M6-06 18 74980625 74980625 G A GALR1 Missense_Mutation p.G273R 0.58 deleterious(0) probably_damaging(0.916) TCGA-EE-A2M6-06 19 12491607 12491607 G A CTD-3105H18.14 3'UTR 0.43 TCGA-EE-A2M6-06 19 13080481 13080481 C T DAND5 Missense_Mutation p.L3F 0.29 tolerated(0.06) unknown(0) TCGA-EE-A2M6-06 19 13216316 13216316 G A TRMT1 Missense_Mutation p.P563L 0.45 tolerated(0.16) benign(0.001) TCGA-EE-A2M6-06 19 15349230 15349230 G A BRD4 Silent p.F1349F 0.44 TCGA-EE-A2M6-06 19 15795942 15795942 C T CYP4F12 Silent p.Y350Y 0.46 TCGA-EE-A2M6-06 19 17038956 17038956 G A CPAMD8 Missense_Mutation p.S1125F 0.54 deleterious(0.03) benign(0.222) TCGA-EE-A2M6-06 19 19905887 19905887 G T ZNF506 Missense_Mutation p.A270E 0.34 deleterious(0.01) benign(0.065) TCGA-EE-A2M6-06 19 19905888 19905888 C T ZNF506 Missense_Mutation p.A270T 0.33 tolerated(0.05) benign(0.001) TCGA-EE-A2M6-06 19 21606298 21606298 C T ZNF493 Silent p.Y279Y 0.41 TCGA-EE-A2M6-06 19 22155532 22155532 C T ZNF208 Silent p.K768K 0.25 TCGA-EE-A2M6-06 19 30935918 30935918 G A ZNF536 Silent p.G483G 0.36 TCGA-EE-A2M6-06 19 36217192 36217192 G A KMT2B Nonsense_Mutation p.W1314* 0.47 TCGA-EE-A2M6-06 19 37853243 37853243 C T HKR1 Silent p.L182L 0.55 TCGA-EE-A2M6-06 19 38916724 38916724 C T RASGRP4 Missense_Mutation p.R3K 0.35 tolerated_low_confidence(0.08) probably_damaging(0.986) TCGA-EE-A2M6-06 19 39096304 39096304 C T MAP4K1 Missense_Mutation p.G423R 0.39 tolerated(0.29) probably_damaging(0.999) TCGA-EE-A2M6-06 19 39964645 39964645 C T SUPT5H Silent p.T845T 0.50 TCGA-EE-A2M6-06 19 40357497 40357497 G A FCGBP Silent p.I5272I 0.33 TCGA-EE-A2M6-06 19 41000807 41000807 C T SPTBN4 Silent p.Y197Y 0.30 TCGA-EE-A2M6-06 19 42490289 42490289 G A ATP1A3 Silent p.S163S 0.32 TCGA-EE-A2M6-06 19 42584278 42584278 A G ZNF574 Missense_Mutation p.K507R 0.49 tolerated(0.52) possibly_damaging(0.636) TCGA-EE-A2M6-06 19 43268361 43268361 G A PSG8 Missense_Mutation p.S46F 0.46 deleterious(0.02) benign(0.03) TCGA-EE-A2M6-06 19 43349399 43349399 C T PSG10P RNA 0.47 TCGA-EE-A2M6-06 19 43576076 43576076 G A PSG2 Missense_Mutation p.S247L 0.33 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A2M6-06 19 45021033 45021033 G A CEACAM20 RNA 0.44 TCGA-EE-A2M6-06 19 46195221 46195221 C T SNRPD2 5'UTR 0.40 TCGA-EE-A2M6-06 19 49657222 49657222 C T HRC Missense_Mutation p.E425K 0.52 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A2M6-06 19 50086873 50086873 G A PRRG2 Missense_Mutation p.D54N 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 19 50099086 50099086 C T PRR12 Silent p.S498S 0.41 TCGA-EE-A2M6-06 19 51453345 51453345 G A KLK5 Missense_Mutation p.S34F 0.48 deleterious(0) possibly_damaging(0.831) TCGA-EE-A2M6-06 19 51503857 51503857 G A KLK8 Missense_Mutation p.P63L 0.54 tolerated(0.51) benign(0.052) TCGA-EE-A2M6-06 19 51738907 51738907 C T CD33 Silent p.H300H 0.50 TCGA-EE-A2M6-06 19 51870410 51870410 G A CLDND2 Missense_Mutation p.P164S 0.42 deleterious(0) possibly_damaging(0.641) TCGA-EE-A2M6-06 19 52001407 52001407 G A SIGLEC12 Nonsense_Mutation p.Q424* 0.44 TCGA-EE-A2M6-06 19 52129336 52129336 C T SIGLEC5 Silent p.G471G 0.34 TCGA-EE-A2M6-06 19 52272677 52272677 C T FPR2 Missense_Mutation p.P256S 0.46 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A2M6-06 19 53669091 53669091 G A ZNF665 Missense_Mutation p.R218C 0.38 tolerated(0.12) benign(0.011) TCGA-EE-A2M6-06 19 53912933 53912933 C T ZNF765 3'UTR 0.38 TCGA-EE-A2M6-06 19 55047106 55047106 C T KIR3DX1 Silent p.I217I 0.39 TCGA-EE-A2M6-06 19 55087514 55087514 C T LILRA2 Missense_Mutation p.S398L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 19 55087523 55087523 C T LILRA2 Missense_Mutation p.S401F 0.35 deleterious(0.03) probably_damaging(1) TCGA-EE-A2M6-06 19 55175309 55175309 G A LILRB4 Silent p.R56R 0.50 TCGA-EE-A2M6-06 19 55175310 55175310 G A LILRB4 Missense_Mutation p.E57K 0.49 tolerated(0.07) possibly_damaging(0.452) TCGA-EE-A2M6-06 19 55298013 55298013 G A KIR2DL1 3'Flank 0.43 TCGA-EE-A2M6-06 19 56160355 56160355 C T CCDC106 5'UTR 0.42 TCGA-EE-A2M6-06 19 56466477 56466477 C T NLRP8 Silent p.L351L 0.38 TCGA-EE-A2M6-06 19 56481909 56481909 G A NLRP8 Splice_Site p.X794_splice 0.43 TCGA-EE-A2M6-06 19 57132840 57132840 C T ZNF71 Missense_Mutation p.P62L 0.38 tolerated(0.47) benign(0.027) TCGA-EE-A2M6-06 19 57640306 57640306 C T USP29 Missense_Mutation p.S88F 0.42 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A2M6-06 19 57646302 57646302 C T ZIM3 Missense_Mutation p.R468K 0.41 tolerated(0.07) benign(0.002) TCGA-EE-A2M6-06 19 5843890 5843890 G A FUT3 Missense_Mutation p.R321C 0.32 deleterious(0) benign(0.006) TCGA-EE-A2M6-06 19 621728 621728 G A POLRMT Missense_Mutation p.S657L 0.38 deleterious(0) probably_damaging(0.936) TCGA-EE-A2M6-06 19 6534954 6534954 C T TNFSF9 Silent p.V214V 0.48 TCGA-EE-A2M6-06 19 7796936 7796936 C T CLEC4G Missense_Mutation p.G18E 0.26 tolerated(0.2) benign(0.295) TCGA-EE-A2M6-06 19 855989 855989 G A ELANE Missense_Mutation p.G210E 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M6-06 19 9047336 9047336 G C MUC16 Missense_Mutation p.T11432R 0.08 possibly_damaging(0.506) TCGA-EE-A2M6-06 19 9056795 9056795 G A MUC16 Silent p.A10217A 0.38 TCGA-EE-A2M6-06 19 9062444 9062444 G A MUC16 Silent p.T8334T 0.46 TCGA-EE-A2M6-06 19 9069683 9069683 C T MUC16 Silent p.V5921V 0.44 TCGA-EE-A2M6-06 19 9072540 9072540 G A MUC16 Missense_Mutation p.S4969F 0.58 unknown(0) TCGA-EE-A2M6-06 19 9075414 9075414 G A MUC16 Missense_Mutation p.S4011F 0.41 unknown(0) TCGA-EE-A2M6-06 19 9077007 9077007 C T MUC16 Missense_Mutation p.G3480E 0.51 unknown(0) TCGA-EE-A2M6-06 19 9083474 9083474 C T MUC16 Missense_Mutation p.E2781K 0.51 unknown(0) TCGA-EE-A2M6-06 19 9721792 9721792 G A ZNF561 Missense_Mutation p.P182L 0.52 tolerated(0.05) benign(0.219) TCGA-EE-A2M6-06 1 109268397 109268397 G A FNDC7 Silent p.T294T 0.65 TCGA-EE-A2M6-06 1 110906415 110906415 G C SLC16A4 Silent p.A479A 0.12 TCGA-EE-A2M6-06 1 112309275 112309275 C T DDX20 Silent p.S743S 0.57 TCGA-EE-A2M6-06 1 112525204 112525204 G C KCND3 Missense_Mutation p.R49G 0.74 tolerated(0.15) possibly_damaging(0.482) TCGA-EE-A2M6-06 1 114523630 114523630 C T OLFML3 Missense_Mutation p.P154S 0.60 tolerated(0.6) benign(0.004) TCGA-EE-A2M6-06 1 117695972 117695972 C T VTCN1 Silent p.V155V 0.12 TCGA-EE-A2M6-06 1 117944941 117944941 C T MAN1A2 Nonsense_Mutation p.Q146* 0.32 TCGA-EE-A2M6-06 1 120056587 120056587 G A HSD3B1 Silent p.L147L 0.66 TCGA-EE-A2M6-06 1 12639406 12639406 G A DHRS3 Missense_Mutation p.A125V 0.82 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M6-06 1 13669060 13669060 G A PRAMEF14 Missense_Mutation p.R424C 0.80 tolerated(0.19) benign(0.443) TCGA-EE-A2M6-06 1 151171388 151171388 G A PIP5K1A 5'UTR 0.65 TCGA-EE-A2M6-06 1 151751596 151751596 C T TDRKH Missense_Mutation p.E182K 0.68 deleterious(0) probably_damaging(0.923) TCGA-EE-A2M6-06 1 152058957 152058957 C T TCHHL1 Missense_Mutation p.G401R 0.71 tolerated(0.45) benign(0.077) TCGA-EE-A2M6-06 1 152286482 152286482 C T FLG Missense_Mutation p.G294R 0.21 probably_damaging(1) TCGA-EE-A2M6-06 1 152326351 152326351 C T FLG2 Missense_Mutation p.G1304E 0.65 benign(0) TCGA-EE-A2M6-06 1 154459132 154459132 G A SHE Missense_Mutation p.S351F 0.25 deleterious(0.03) benign(0.125) TCGA-EE-A2M6-06 1 156084914 156084914 G A LMNA Missense_Mutation p.V69M 0.68 tolerated(0.08) possibly_damaging(0.507) TCGA-EE-A2M6-06 1 157665985 157665985 C T FCRL3 Missense_Mutation p.G326E 0.57 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2M6-06 1 158604384 158604384 C T SPTA1 Silent p.K1838K 0.65 TCGA-EE-A2M6-06 1 158909006 158909006 C T PYHIN1 Missense_Mutation p.S183L 0.74 tolerated(0.14) benign(0.005) TCGA-EE-A2M6-06 1 161021208 161021208 G A ARHGAP30 Missense_Mutation p.S439F 0.63 deleterious(0) possibly_damaging(0.695) TCGA-EE-A2M6-06 1 163172599 163172599 G A RGS5 Silent p.P9P 0.29 TCGA-EE-A2M6-06 1 167825660 167825660 C T ADCY10 Silent p.R638R 0.19 TCGA-EE-A2M6-06 1 16902912 16902912 C T NBPF1 Missense_Mutation p.E657K 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2M6-06 1 169388371 169388371 C T CCDC181 Silent p.E365E 0.35 TCGA-EE-A2M6-06 1 171165931 171165931 C T FMO2 Silent p.I155I 0.12 TCGA-EE-A2M6-06 1 175046622 175046622 C T TNN Missense_Mutation p.S23L 0.79 tolerated(0.13) probably_damaging(0.997) TCGA-EE-A2M6-06 1 176993846 176993846 C T ASTN1 Silent p.V381V 0.57 TCGA-EE-A2M6-06 1 179523625 179523625 C T NPHS2 Silent p.V260V 0.19 TCGA-EE-A2M6-06 1 181686402 181686402 C T CACNA1E Missense_Mutation p.H497Y 0.67 deleterious(0.03) benign(0.152) TCGA-EE-A2M6-06 1 181726163 181726163 C T CACNA1E Silent p.F1410F 0.65 TCGA-EE-A2M6-06 1 183093825 183093825 C T LAMC1 Missense_Mutation p.P821S 0.20 tolerated(0.15) benign(0.274) TCGA-EE-A2M6-06 1 185970777 185970777 C A HMCN1 Missense_Mutation p.L1418I 0.30 benign(0.125) TCGA-EE-A2M6-06 1 19477069 19477069 A G UBR4 Splice_Site p.X2477_splice 0.20 TCGA-EE-A2M6-06 1 197074279 197074279 G - ASPM Frame_Shift_Del p.L1368* 0.36 TCGA-EE-A2M6-06 1 197407716 197407716 G A CRB1 Silent p.K1263K 0.31 TCGA-EE-A2M6-06 1 205814473 205814473 C T PM20D1 Missense_Mutation p.D157N 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 1 211486424 211486424 A G RCOR3 Intron 0.73 TCGA-EE-A2M6-06 1 214171453 214171453 G A PROX1 Silent p.R525R 0.71 TCGA-EE-A2M6-06 1 215342659 215342659 C T KCNK2 Missense_Mutation p.T198I 0.64 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2M6-06 1 22169278 22169278 G A HSPG2 Silent p.L2965L 0.73 TCGA-EE-A2M6-06 1 22304888 22304888 C T CELA3B Missense_Mutation p.R24C 0.13 deleterious(0.04) benign(0.061) TCGA-EE-A2M6-06 1 226352628 226352628 C T ACBD3 Missense_Mutation p.R144K 0.23 tolerated(1) benign(0) TCGA-EE-A2M6-06 1 228465557 228465557 A T OBSCN Missense_Mutation p.K2715M 0.28 probably_damaging(0.988) TCGA-EE-A2M6-06 1 23235571 23235571 C T EPHB2 Silent p.F804F 0.21 TCGA-EE-A2M6-06 1 23237024 23237024 C T EPHB2 Silent p.I885I 0.19 TCGA-EE-A2M6-06 1 237957208 237957208 G A RYR2 Silent p.R4608R 0.20 TCGA-EE-A2M6-06 1 238048544 238048544 G A ZP4 Missense_Mutation p.P411L 0.36 deleterious(0) probably_damaging(0.919) TCGA-EE-A2M6-06 1 245849702 245849702 C T KIF26B Silent p.S1139S 0.64 TCGA-EE-A2M6-06 1 247695748 247695748 G A OR2C3 Silent p.P22P 0.21 TCGA-EE-A2M6-06 1 248343836 248343836 C T OR2M2 Silent p.S183S 0.16 TCGA-EE-A2M6-06 1 31347287 31347290 GCAG CAA SDC3 Frame_Shift_Del p.A339Vfs*49 0.19 TCGA-EE-A2M6-06 1 32557514 32557514 T C TMEM39B Missense_Mutation p.F277L 0.14 tolerated(0.66) benign(0.004) TCGA-EE-A2M6-06 1 32657917 32657917 C T TXLNA Silent p.I323I 0.21 TCGA-EE-A2M6-06 1 34312591 34312591 G A CSMD2 Silent p.T269T 0.15 TCGA-EE-A2M6-06 1 36068944 36068944 G A PSMB2 Missense_Mutation p.T177I 0.73 tolerated(0.08) benign(0.03) TCGA-EE-A2M6-06 1 38463120 38463120 C T FHL3 Missense_Mutation p.G267E 0.16 tolerated(1) benign(0.338) TCGA-EE-A2M6-06 1 38463121 38463121 C T FHL3 Missense_Mutation p.G267R 0.16 tolerated(0.86) benign(0.022) TCGA-EE-A2M6-06 1 40033086 40033086 G A PABPC4 Intron 0.15 TCGA-EE-A2M6-06 1 42050500 42050500 G A HIVEP3 5'UTR 0.74 TCGA-EE-A2M6-06 1 42050501 42050501 G A HIVEP3 5'UTR 0.75 TCGA-EE-A2M6-06 1 44466575 44466575 G A SLC6A9 Intron 0.18 TCGA-EE-A2M6-06 1 47403731 47403731 C T CYP4A11 Missense_Mutation p.G92R 0.68 tolerated(0.26) benign(0.366) TCGA-EE-A2M6-06 1 47606542 47606542 C T CYP4A22 Missense_Mutation p.R96C 0.68 tolerated(0.08) possibly_damaging(0.848) TCGA-EE-A2M6-06 1 50666700 50666700 C - ELAVL4 Frame_Shift_Del p.F335Sfs*14 0.39 TCGA-EE-A2M6-06 1 51934234 51934234 A C EPS15 Missense_Mutation p.F74V 0.29 deleterious(0) probably_damaging(0.986) TCGA-EE-A2M6-06 1 53723075 53723075 G A LRP8 Silent p.T757T 0.24 TCGA-EE-A2M6-06 1 63299788 63299788 G A ATG4C Splice_Site p.X338_splice 0.65 TCGA-EE-A2M6-06 1 70339239 70339239 C T LRRC7 Intron 0.73 TCGA-EE-A2M6-06 1 70484495 70484495 G A LRRC7 Missense_Mutation p.D434N 0.86 deleterious(0) probably_damaging(0.989) TCGA-EE-A2M6-06 1 70493873 70493873 G A LRRC7 Missense_Mutation p.R567Q 0.61 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2M6-06 1 75078426 75078426 C T C1orf173 Silent p.G356G 0.76 TCGA-EE-A2M6-06 1 77984388 77984388 G A AK5 Missense_Mutation p.M429I 0.19 tolerated(0.27) benign(0.011) TCGA-EE-A2M6-06 1 9011548 9011548 G A CA6 Intron 0.30 TCGA-EE-A2M6-06 1 9171506 9171506 C T GPR157 Silent p.L142L 0.19 TCGA-EE-A2M6-06 1 93646171 93646171 G A CCDC18 5'Flank 0.14 TCGA-EE-A2M6-06 1 957749 957749 C T AGRN Silent p.L124L 0.75 TCGA-EE-A2M6-06 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M6-06 20 17208089 17208089 C T PCSK2 Missense_Mutation p.R47C 0.48 deleterious(0.01) benign(0.306) TCGA-EE-A2M6-06 20 20029057 20029057 G A CRNKL1 Missense_Mutation p.R290C 0.46 deleterious(0) benign(0.432) TCGA-EE-A2M6-06 20 25252026 25252026 C T PYGB Silent p.F144F 0.49 TCGA-EE-A2M6-06 20 2778646 2778646 C T CPXM1 Missense_Mutation p.G217R 0.28 tolerated(0.59) benign(0.014) TCGA-EE-A2M6-06 20 29891093 29891093 A G DEFB116 Silent p.S77S 0.38 TCGA-EE-A2M6-06 20 32344994 32344994 C T ZNF341 Missense_Mutation p.P261L 0.41 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2M6-06 20 33122537 33122537 C T DYNLRB1 Missense_Mutation p.P62L 0.49 deleterious(0) probably_damaging(0.939) TCGA-EE-A2M6-06 20 33331098 33331098 G A NCOA6 Missense_Mutation p.P988S 0.52 probably_damaging(0.979) TCGA-EE-A2M6-06 20 33440319 33440319 G A GGT7 Missense_Mutation p.R448W 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 20 33440320 33440320 G A GGT7 Silent p.L447L 0.38 TCGA-EE-A2M6-06 20 37191301 37191301 T A RALGAPB Missense_Mutation p.S1220T 0.45 tolerated(0.3) benign(0.006) TCGA-EE-A2M6-06 20 41306560 41306560 C T PTPRT Missense_Mutation p.E367K 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2M6-06 20 42747261 42747261 G C JPH2 Missense_Mutation p.T391R 0.54 deleterious(0) probably_damaging(0.983) TCGA-EE-A2M6-06 20 42984463 42984463 C T R3HDML 3'Flank 0.42 TCGA-EE-A2M6-06 20 42984464 42984464 C T R3HDML 3'Flank 0.41 TCGA-EE-A2M6-06 20 43851660 43851660 G A SEMG2 Missense_Mutation p.E463K 0.41 tolerated(0.05) possibly_damaging(0.621) TCGA-EE-A2M6-06 20 44516183 44516183 G A SPATA25 Missense_Mutation p.S16F 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2M6-06 20 44663613 44663613 C T SLC12A5 Missense_Mutation p.P50S 0.42 deleterious(0.05) benign(0.391) TCGA-EE-A2M6-06 20 47990547 47990547 G A KCNB1 Missense_Mutation p.S517L 0.46 tolerated_low_confidence(0.26) benign(0.039) TCGA-EE-A2M6-06 20 50290724 50290724 G A ATP9A Silent p.F335F 0.40 TCGA-EE-A2M6-06 20 9495485 9495485 C T LAMP5 5'UTR 0.40 TCGA-EE-A2M6-06 21 10914419 10914419 G A TPTE Nonsense_Mutation p.Q434* 0.31 TCGA-EE-A2M6-06 21 28337649 28337649 G A ADAMTS5 Silent p.D354D 0.22 TCGA-EE-A2M6-06 21 31812836 31812836 C T KRTAP15-1 Missense_Mutation p.S64F 0.30 deleterious(0.05) probably_damaging(0.961) TCGA-EE-A2M6-06 21 41505877 41505877 C T DSCAM Missense_Mutation p.E1156K 0.60 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2M6-06 21 42754398 42754398 C T MX2 Silent p.I213I 0.31 TCGA-EE-A2M6-06 21 42811650 42811650 G A MX1 Missense_Mutation p.G156R 0.29 deleterious(0) probably_damaging(0.968) TCGA-EE-A2M6-06 21 45168938 45168938 C T PDXK Silent p.I147I 0.42 TCGA-EE-A2M6-06 21 47421964 47421964 G T COL6A1 Silent p.R682R 0.42 TCGA-EE-A2M6-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.10 TCGA-EE-A2M6-06 22 17976607 17976607 G A CECR2 Missense_Mutation p.D91N 0.22 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A2M6-06 22 20819329 20819329 G A KLHL22 Missense_Mutation p.P310S 0.30 tolerated(0.75) benign(0.01) TCGA-EE-A2M6-06 22 22681916 22681916 C T IGLV1-50 Missense_Mutation p.P33L 0.32 tolerated_low_confidence(1) benign(0.008) TCGA-EE-A2M6-06 22 23438121 23438121 C T GNAZ Missense_Mutation p.S80L 0.13 deleterious(0) possibly_damaging(0.642) TCGA-EE-A2M6-06 22 26294398 26294398 G A MYO18B Missense_Mutation p.R1598Q 0.24 deleterious(0.01) possibly_damaging(0.46) TCGA-EE-A2M6-06 22 35729433 35729433 G A TOM1 Missense_Mutation p.D324N 0.61 tolerated(0.08) benign(0.016) TCGA-EE-A2M6-06 22 36556761 36556761 C T APOL3 Missense_Mutation p.R60K 0.52 deleterious_low_confidence(0.04) benign(0.018) TCGA-EE-A2M6-06 22 36627472 36627472 C T APOL2 Silent p.Q17Q 0.64 TCGA-EE-A2M6-06 22 40415294 40415294 C A FAM83F Missense_Mutation p.F204L 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 22 43471559 43471559 C T TTLL1 Missense_Mutation p.E12K 0.66 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A2M6-06 22 44282289 44282289 G A PNPLA5 Silent p.G281G 0.33 TCGA-EE-A2M6-06 22 44681591 44681591 C T KIAA1644 Missense_Mutation p.G106R 0.68 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 22 44892571 44892571 G A LDOC1L 3'UTR 0.69 TCGA-EE-A2M6-06 22 45312397 45312397 G T PHF21B Silent p.P109P 0.11 TCGA-EE-A2M6-06 22 50582601 50582601 C T MOV10L1 Missense_Mutation p.R812W 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 22 51182578 51182578 G A ACR Missense_Mutation p.V219I 0.23 tolerated(1) benign(0.015) TCGA-EE-A2M6-06 22 51182579 51182579 T A ACR Missense_Mutation p.V219D 0.23 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2M6-06 2 100917174 100917174 T G LONRF2 Missense_Mutation p.K333Q 0.70 tolerated(0.2) benign(0.08) TCGA-EE-A2M6-06 2 101009730 101009730 T C CHST10 Missense_Mutation p.K350E 0.29 tolerated(0.2) benign(0.002) TCGA-EE-A2M6-06 2 103120072 103120072 C T SLC9A4 Nonsense_Mutation p.Q296* 0.62 TCGA-EE-A2M6-06 2 108476245 108476245 A G RGPD4 Missense_Mutation p.K568E 0.63 deleterious(0) possibly_damaging(0.636) TCGA-EE-A2M6-06 2 11729034 11729034 C T GREB1 Missense_Mutation p.T441I 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 2 128186093 128186093 C T PROC Silent p.C319C 0.26 TCGA-EE-A2M6-06 2 128867245 128867245 C T UGGT1 Missense_Mutation p.S149L 0.64 tolerated(0.1) benign(0.004) TCGA-EE-A2M6-06 2 130897652 130897652 G A CCDC74B Silent p.S298S 0.16 TCGA-EE-A2M6-06 2 132021477 132021477 G A POTEE Missense_Mutation p.E817K 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.743) TCGA-EE-A2M6-06 2 137917850 137917850 C T THSD7B Silent p.I479I 0.16 TCGA-EE-A2M6-06 2 141665549 141665549 G A LRP1B Silent p.P1139P 0.69 TCGA-EE-A2M6-06 2 149806454 149806454 G A KIF5C Silent p.G272G 0.85 TCGA-EE-A2M6-06 2 152424920 152424920 C T NEB Silent p.R5882R 0.18 TCGA-EE-A2M6-06 2 163374300 163374300 C T KCNH7 Missense_Mutation p.D278N 0.20 tolerated(0.24) benign(0.018) TCGA-EE-A2M6-06 2 165552277 165552277 G T COBLL1 Missense_Mutation p.T580K 0.30 tolerated(0.14) benign(0.055) TCGA-EE-A2M6-06 2 166848693 166848693 C T SCN1A Missense_Mutation p.E1698K 0.18 deleterious(0.03) possibly_damaging(0.55) TCGA-EE-A2M6-06 2 166930068 166930068 G A SCN1A Missense_Mutation p.L22F 0.33 deleterious(0.01) benign(0.015) TCGA-EE-A2M6-06 2 167085480 167085480 G A SCN9A Silent p.V1298V 0.23 TCGA-EE-A2M6-06 2 168725653 168725653 C T B3GALT1 Missense_Mutation p.S35F 0.21 deleterious(0.02) benign(0.001) TCGA-EE-A2M6-06 2 173659871 173659871 G A RAPGEF4 Missense_Mutation p.E62K 0.67 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 2 174224179 174224179 C T CDCA7 Missense_Mutation p.S115L 0.73 deleterious(0.02) possibly_damaging(0.893) TCGA-EE-A2M6-06 2 179429641 179429641 G A TTN Missense_Mutation p.P27073L 0.35 TCGA-EE-A2M6-06 2 179431955 179431955 C T TTN Missense_Mutation p.E26302K 0.18 TCGA-EE-A2M6-06 2 179437457 179437457 C T TTN Missense_Mutation p.E24468K 0.18 TCGA-EE-A2M6-06 2 179442108 179442108 C T TTN Missense_Mutation p.G22985E 0.14 TCGA-EE-A2M6-06 2 179485149 179485149 C T TTN Missense_Mutation p.D15367N 0.28 TCGA-EE-A2M6-06 2 179584052 179584052 C T TTN Missense_Mutation p.G8022E 0.69 TCGA-EE-A2M6-06 2 179596608 179596608 G A TTN Missense_Mutation p.P5665L 0.19 TCGA-EE-A2M6-06 2 179598097 179598097 C T TTN Missense_Mutation p.R5308Q 0.22 TCGA-EE-A2M6-06 2 179610843 179610843 C T TTN Intron 0.16 TCGA-EE-A2M6-06 2 179611274 179611274 G A TTN Intron 0.26 TCGA-EE-A2M6-06 2 179613305 179613305 G A TTN Intron 0.64 TCGA-EE-A2M6-06 2 179629430 179629430 G A TTN Missense_Mutation p.S3271F 0.76 TCGA-EE-A2M6-06 2 179641389 179641389 C T TTN Missense_Mutation p.M1734I 0.24 TCGA-EE-A2M6-06 2 179642063 179642063 G A TTN Intron 0.24 TCGA-EE-A2M6-06 2 179658259 179658259 C T TTN Missense_Mutation p.E470K 0.21 TCGA-EE-A2M6-06 2 182542879 182542879 A G NEUROD1 Missense_Mutation p.S237P 0.22 tolerated(0.06) benign(0.275) TCGA-EE-A2M6-06 2 186671159 186671159 C T FSIP2 Missense_Mutation p.P5798L 0.59 benign(0.004) TCGA-EE-A2M6-06 2 196737056 196737056 G A DNAH7 Missense_Mutation p.S2184F 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2M6-06 2 196737151 196737151 G A DNAH7 Silent p.I2152I 0.20 TCGA-EE-A2M6-06 2 200193516 200193516 G A SATB2 Missense_Mutation p.R431C 0.20 deleterious(0.05) possibly_damaging(0.891) TCGA-EE-A2M6-06 2 202136301 202136301 T C CASP8 Missense_Mutation p.L182P 0.11 deleterious(0) benign(0.093) TCGA-EE-A2M6-06 2 206480197 206480197 C T PARD3B Missense_Mutation p.P1031L 0.21 deleterious(0) possibly_damaging(0.705) TCGA-EE-A2M6-06 2 207170795 207170795 G A ZDBF2 Missense_Mutation p.E515K 0.54 tolerated(0.08) possibly_damaging(0.678) TCGA-EE-A2M6-06 2 21233061 21233061 G A APOB Missense_Mutation p.H2227Y 0.69 possibly_damaging(0.637) TCGA-EE-A2M6-06 2 21235348 21235348 C T APOB Silent p.Q1464Q 0.68 TCGA-EE-A2M6-06 2 213921707 213921707 C T IKZF2 Missense_Mutation p.E86K 0.21 tolerated(0.21) benign(0.119) TCGA-EE-A2M6-06 2 215865705 215865705 C T ABCA12 Missense_Mutation p.R968K 0.21 tolerated(0.31) benign(0.004) TCGA-EE-A2M6-06 2 216279524 216279524 G C FN1 Intron 0.33 TCGA-EE-A2M6-06 2 218712975 218712975 G A TNS1 Silent p.P630P 0.66 TCGA-EE-A2M6-06 2 227920702 227920702 G A COL4A4 Missense_Mutation p.P892L 0.65 unknown(0) TCGA-EE-A2M6-06 2 230902211 230902211 G A SLC16A14 Missense_Mutation p.S473F 0.17 deleterious(0) probably_damaging(0.984) TCGA-EE-A2M6-06 2 231112687 231112687 G A SP140 Missense_Mutation p.E267K 0.62 tolerated(0.54) benign(0) TCGA-EE-A2M6-06 2 234590981 234590981 T C UGT1A7 Missense_Mutation p.L133S 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M6-06 2 24296976 24296976 C T SF3B14 Missense_Mutation p.G40E 0.65 deleterious(0) probably_damaging(0.985) TCGA-EE-A2M6-06 2 26536365 26536365 G A GPR113 Silent p.A451A 0.54 TCGA-EE-A2M6-06 2 27317426 27317426 C T KHK Silent p.A97A 0.22 TCGA-EE-A2M6-06 2 32340802 32340802 C T SPAST Missense_Mutation p.P301L 0.62 tolerated(0.06) benign(0.169) TCGA-EE-A2M6-06 2 32445306 32445306 C T SLC30A6 Nonsense_Mutation p.R344* 0.19 TCGA-EE-A2M6-06 2 33774771 33774771 G A RASGRP3 Missense_Mutation p.E499K 0.20 deleterious(0) benign(0.328) TCGA-EE-A2M6-06 2 44065947 44065947 G A ABCG5 5'UTR 0.69 TCGA-EE-A2M6-06 2 47388964 47388964 G A CALM2 Missense_Mutation p.R107C 0.20 tolerated_low_confidence(0.07) benign(0.043) TCGA-EE-A2M6-06 2 47613818 47613818 C T EPCAM 3'UTR 0.45 TCGA-EE-A2M6-06 2 47613819 47613819 G T EPCAM 3'UTR 0.42 TCGA-EE-A2M6-06 2 54483237 54483237 C T TSPYL6 Missense_Mutation p.E18K 0.27 tolerated(0.85) benign(0.185) TCGA-EE-A2M6-06 2 71730396 71730396 C T DYSF Silent p.L98L 0.22 TCGA-EE-A2M6-06 2 74491355 74491355 G A SLC4A5 Missense_Mutation p.L212F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 2 74491356 74491356 G A SLC4A5 Silent p.V211V 0.17 TCGA-EE-A2M6-06 2 85663599 85663599 C T SH2D6 Missense_Mutation p.S141F 0.75 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 2 89197021 89197021 G A IGKV5-2 Silent p.T22T 0.50 TCGA-EE-A2M6-06 3 101284124 101284124 G A TRMT10C Missense_Mutation p.E167K 0.45 tolerated(0.17) possibly_damaging(0.821) TCGA-EE-A2M6-06 3 105290793 105290793 T G ALCAM 3'UTR 0.44 TCGA-EE-A2M6-06 3 108219027 108219027 C T MYH15 Missense_Mutation p.R165Q 0.39 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2M6-06 3 108822720 108822720 C T MORC1 Missense_Mutation p.D67N 0.39 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2M6-06 3 109050810 109050810 G A DPPA4 Missense_Mutation p.P83S 0.41 deleterious(0.02) probably_damaging(1) TCGA-EE-A2M6-06 3 111632506 111632506 C G PHLDB2 Missense_Mutation p.P559R 0.42 tolerated(0.64) benign(0.001) TCGA-EE-A2M6-06 3 111785312 111785312 C T TMPRSS7 Silent p.D417D 0.42 TCGA-EE-A2M6-06 3 111794228 111794228 G A TMPRSS7 Missense_Mutation p.G489E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 3 112711873 112711873 G T GTPBP8 Missense_Mutation p.V113L 0.32 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2M6-06 3 118867140 118867140 G A C3orf30 Missense_Mutation p.M504I 0.42 deleterious(0.02) benign(0.216) TCGA-EE-A2M6-06 3 122667438 122667438 G A SEMA5B Silent p.L135L 0.35 TCGA-EE-A2M6-06 3 124807214 124807214 C T SLC12A8 Missense_Mutation p.G641E 0.52 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M6-06 3 124826656 124826656 G A SLC12A8 Silent p.F458F 0.48 TCGA-EE-A2M6-06 3 128690075 128690075 C A KIAA1257 Missense_Mutation p.R408L 0.79 tolerated_low_confidence(0.38) benign(0.016) TCGA-EE-A2M6-06 3 128971716 128971716 C T COPG1 Intron 0.45 TCGA-EE-A2M6-06 3 130889731 130889731 G A NEK11 Missense_Mutation p.E467K 0.39 tolerated(0.15) benign(0.023) TCGA-EE-A2M6-06 3 147128811 147128811 C T ZIC1 Silent p.C304C 0.37 TCGA-EE-A2M6-06 3 147131271 147131271 C T ZIC1 Missense_Mutation p.S426F 0.31 deleterious(0.02) benign(0.136) TCGA-EE-A2M6-06 3 151046628 151046628 G A P2RY13 Silent p.I72I 0.49 TCGA-EE-A2M6-06 3 151073743 151073743 C T MED12L Silent p.L824L 0.34 TCGA-EE-A2M6-06 3 151166294 151166294 G A IGSF10 Missense_Mutation p.T492I 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A2M6-06 3 15298626 15298626 T C SH3BP5 Intron 0.92 TCGA-EE-A2M6-06 3 154027598 154027598 T C DHX36 Silent p.L219L 0.82 TCGA-EE-A2M6-06 3 155861109 155861109 C T KCNAB1 Intron 0.59 TCGA-EE-A2M6-06 3 164739066 164739066 C T SI Missense_Mutation p.E1069K 0.50 tolerated(0.52) benign(0.196) TCGA-EE-A2M6-06 3 167322223 167322223 G A WDR49 5'UTR 0.56 TCGA-EE-A2M6-06 3 170786636 170786636 C T TNIK Splice_Site p.X1233_splice 0.50 TCGA-EE-A2M6-06 3 172227089 172227089 G A TNFSF10 Silent p.P112P 0.44 TCGA-EE-A2M6-06 3 190026224 190026224 C T CLDN1 Missense_Mutation p.E160K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 3 193125150 193125150 G A ATP13A4 Silent p.S1110S 0.27 TCGA-EE-A2M6-06 3 27444793 27444793 C T SLC4A7 Missense_Mutation p.D711N 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 3 32932942 32932942 C T TRIM71 Missense_Mutation p.S749F 1.00 deleterious(0) probably_damaging(0.978) TCGA-EE-A2M6-06 3 38768109 38768109 G A SCN10A Silent p.I1025I 0.86 TCGA-EE-A2M6-06 3 38936092 38936092 C T SCN11A Missense_Mutation p.E923K 0.83 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A2M6-06 3 38946682 38946682 C T SCN11A Splice_Site p.X535_splice 0.87 TCGA-EE-A2M6-06 3 38951578 38951578 G A SCN11A Silent p.S360S 0.80 TCGA-EE-A2M6-06 3 40211497 40211497 G A MYRIP Nonsense_Mutation p.W262* 0.87 TCGA-EE-A2M6-06 3 41266134 41266136 CTT - CTNNB1 In_Frame_Del p.S45del 0.44 TCGA-EE-A2M6-06 3 4355387 4355387 C T SETMAR Missense_Mutation p.P321L 0.51 deleterious_low_confidence(0) benign(0.041) TCGA-EE-A2M6-06 3 44488675 44488675 C T ZNF445 Missense_Mutation p.E830K 0.78 tolerated(0.65) unknown(0) TCGA-EE-A2M6-06 3 44776024 44776024 T C ZNF501 Silent p.L37L 0.97 TCGA-EE-A2M6-06 3 44872506 44872506 T A KIF15 Missense_Mutation p.I1056K 0.91 deleterious(0) possibly_damaging(0.748) TCGA-EE-A2M6-06 3 46874545 46874545 G A PRSS42 Missense_Mutation p.P175S 0.83 tolerated(0.08) possibly_damaging(0.824) TCGA-EE-A2M6-06 3 48619352 48619352 C T COL7A1 Missense_Mutation p.G1554R 0.84 unknown(0) TCGA-EE-A2M6-06 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.93 TCGA-EE-A2M6-06 3 58067484 58067484 A G FLNB Silent p.K256K 0.89 TCGA-EE-A2M6-06 3 65416490 65416490 T G MAGI1 Missense_Mutation p.K477T 0.88 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 3 7620138 7620138 C T GRM7 Silent p.V515V 0.41 TCGA-EE-A2M6-06 3 77671460 77671460 G A ROBO2 Missense_Mutation p.E1229K 0.90 tolerated(0.28) benign(0.292) TCGA-EE-A2M6-06 3 89259572 89259572 C T EPHA3 Missense_Mutation p.P239L 0.71 tolerated(0.28) benign(0.074) TCGA-EE-A2M6-06 3 97124004 97124004 G A EPHA6 Silent p.L539L 0.50 TCGA-EE-A2M6-06 3 9739528 9739528 G A MTMR14 Missense_Mutation p.D583N 0.85 deleterious(0.04) probably_damaging(0.956) TCGA-EE-A2M6-06 3 99567926 99567926 C T FILIP1L Nonsense_Mutation p.W865* 0.50 TCGA-EE-A2M6-06 4 100239320 100239320 G A ADH1B Missense_Mutation p.H48Y 0.55 tolerated(0.19) benign(0.115) TCGA-EE-A2M6-06 4 100349083 100349083 G C ADH7 Silent p.V157V 0.24 TCGA-EE-A2M6-06 4 104640528 104640528 C T TACR3 Missense_Mutation p.G102E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 4 115891704 115891704 A C NDST4 Missense_Mutation p.L368R 0.88 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M6-06 4 119951096 119951096 C T SYNPO2 Missense_Mutation p.P389L 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 4 119952981 119952981 G A SYNPO2 Silent p.T1017T 0.83 TCGA-EE-A2M6-06 4 123183929 123183929 C T KIAA1109 Missense_Mutation p.P2258L 0.70 probably_damaging(0.999) TCGA-EE-A2M6-06 4 124322750 124322750 G A SPRY1 Missense_Mutation p.D2N 0.80 deleterious(0.01) benign(0.051) TCGA-EE-A2M6-06 4 141590897 141590897 G A TBC1D9 Missense_Mutation p.A443V 0.14 tolerated(0.4) benign(0.054) TCGA-EE-A2M6-06 4 155508667 155508667 C T FGA Silent p.L169L 0.13 TCGA-EE-A2M6-06 4 162421188 162421188 C T FSTL5 Missense_Mutation p.E480K 0.83 deleterious(0) probably_damaging(0.952) TCGA-EE-A2M6-06 4 169322109 169322109 C T DDX60L Missense_Mutation p.G1120E 0.96 tolerated(1) benign(0) TCGA-EE-A2M6-06 4 183601472 183601472 C T TENM3 Missense_Mutation p.P537S 0.80 tolerated(0.06) possibly_damaging(0.857) TCGA-EE-A2M6-06 4 25314516 25314516 C T ZCCHC4 Missense_Mutation p.L29F 0.23 tolerated(0.22) benign(0) TCGA-EE-A2M6-06 4 3031080 3031080 G A GRK4 Missense_Mutation p.D405N 0.20 deleterious(0.02) benign(0.168) TCGA-EE-A2M6-06 4 3319513 3319513 C T RGS12 Missense_Mutation p.P539L 0.45 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2M6-06 4 4304110 4304110 C T ZBTB49 Missense_Mutation p.R183C 0.18 tolerated(0.12) benign(0.202) TCGA-EE-A2M6-06 4 46066497 46066497 G A GABRG1 Missense_Mutation p.P196S 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 4 46737038 46737038 C T COX7B2 Missense_Mutation p.A58T 0.68 tolerated(0.44) benign(0.077) TCGA-EE-A2M6-06 4 6114662 6114662 C T JAKMIP1 5'UTR 0.31 TCGA-EE-A2M6-06 4 69535994 69535994 C T UGT2B15 Missense_Mutation p.E115K 0.63 tolerated(0.48) benign(0.044) TCGA-EE-A2M6-06 4 71114848 71114848 C T CSN3 Missense_Mutation p.P74L 0.59 tolerated(0.09) possibly_damaging(0.908) TCGA-EE-A2M6-06 4 72204810 72204810 G T SLC4A4 Intron 0.50 TCGA-EE-A2M6-06 5 101595951 101595951 C T SLCO4C1 Missense_Mutation p.G365E 0.80 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2M6-06 5 108516559 108516559 G A FER Silent p.K720K 0.80 TCGA-EE-A2M6-06 5 11565150 11565150 G A CTNND2 Silent p.L65L 0.33 TCGA-EE-A2M6-06 5 13701415 13701415 C T DNAH5 Missense_Mutation p.G4490E 0.49 probably_damaging(0.982) TCGA-EE-A2M6-06 5 13727742 13727742 C T DNAH5 Nonsense_Mutation p.W3969* 0.48 TCGA-EE-A2M6-06 5 13762932 13762932 C T DNAH5 Missense_Mutation p.E3394K 0.50 possibly_damaging(0.635) TCGA-EE-A2M6-06 5 13841216 13841216 C T DNAH5 Missense_Mutation p.M1836I 0.44 benign(0.019) TCGA-EE-A2M6-06 5 13923496 13923496 G A DNAH5 Missense_Mutation p.P111S 0.54 possibly_damaging(0.641) TCGA-EE-A2M6-06 5 140572253 140572253 C T PCDHB10 Missense_Mutation p.S43F 0.82 tolerated_low_confidence(0.11) benign(0.297) TCGA-EE-A2M6-06 5 140741396 140741396 C T PCDHGB2 Missense_Mutation p.P565L 0.71 deleterious(0) probably_damaging(0.984) TCGA-EE-A2M6-06 5 140741397 140741397 C T PCDHGB2 Silent p.P565P 0.70 TCGA-EE-A2M6-06 5 140769061 140769061 C T PCDHGB4 Missense_Mutation p.S537L 0.90 deleterious(0.03) possibly_damaging(0.479) TCGA-EE-A2M6-06 5 141325235 141325235 G T PCDH12 Missense_Mutation p.T1089K 0.80 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 5 1441544 1441544 C T SLC6A3 Missense_Mutation p.M116I 0.48 deleterious(0) possibly_damaging(0.789) TCGA-EE-A2M6-06 5 149495315 149495315 G A PDGFRB 3'UTR 0.77 TCGA-EE-A2M6-06 5 16091132 16091132 C T MARCH11 Missense_Mutation p.G251E 0.62 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2M6-06 5 205858 205858 A G CCDC127 Silent p.L113L 0.52 TCGA-EE-A2M6-06 5 26915903 26915903 C T CDH9 Missense_Mutation p.E120K 0.44 tolerated(0.22) probably_damaging(0.987) TCGA-EE-A2M6-06 5 31297437 31297437 C T CDH6 Missense_Mutation p.P189S 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2M6-06 5 35968221 35968221 C T UGT3A1 Missense_Mutation p.E71K 0.37 tolerated(0.57) benign(0.074) TCGA-EE-A2M6-06 5 37167295 37167295 G A C5orf42 Silent p.I2418I 0.41 TCGA-EE-A2M6-06 5 39341799 39341799 G A C9 Missense_Mutation p.R63C 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 5 41018857 41018857 C T MROH2B Missense_Mutation p.G870E 0.38 tolerated(0.49) benign(0.041) TCGA-EE-A2M6-06 5 41181543 41181543 G A C6 Missense_Mutation p.P282L 0.36 tolerated(0.08) benign(0.172) TCGA-EE-A2M6-06 5 41313591 41313591 C T PLCXD3 3'UTR 0.50 TCGA-EE-A2M6-06 5 52204848 52204848 G C ITGA1 Missense_Mutation p.V526L 0.10 deleterious(0.01) possibly_damaging(0.638) TCGA-EE-A2M6-06 5 54468413 54468413 C T CDC20B Intron 0.88 TCGA-EE-A2M6-06 5 66459023 66459023 C T MAST4 Missense_Mutation p.S1339F 0.79 probably_damaging(0.962) TCGA-EE-A2M6-06 5 6746461 6746461 C T PAPD7 Silent p.I210I 0.49 TCGA-EE-A2M6-06 5 71756214 71756214 G A ZNF366 Silent p.C370C 0.93 TCGA-EE-A2M6-06 5 95746650 95746650 C T PCSK1 Missense_Mutation p.G308E 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 6 116836980 116836980 C T FAM26E Missense_Mutation p.P253L 0.88 tolerated(0.38) benign(0.054) TCGA-EE-A2M6-06 6 117114072 117114072 G A GPRC6A Missense_Mutation p.L672F 0.75 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2M6-06 6 130466517 130466517 C T SAMD3 Missense_Mutation p.D416N 0.82 tolerated(0.06) benign(0.093) TCGA-EE-A2M6-06 6 130762352 130762352 C T TMEM200A Missense_Mutation p.S262F 0.93 tolerated(0.45) benign(0.172) TCGA-EE-A2M6-06 6 148840834 148840834 C T SASH1 Silent p.S338S 0.81 TCGA-EE-A2M6-06 6 149953914 149953914 G A KATNA1 Missense_Mutation p.P101S 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M6-06 6 150713522 150713522 G A IYD Missense_Mutation p.V138M 0.86 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 6 161056216 161056216 C T LPA Silent p.G338G 0.12 TCGA-EE-A2M6-06 6 166831754 166831754 G A RPS6KA2 Missense_Mutation p.L641F 0.91 tolerated(0.35) benign(0.04) TCGA-EE-A2M6-06 6 22287556 22287556 G A PRL 3'UTR 0.83 TCGA-EE-A2M6-06 6 24596164 24596164 C T KIAA0319 Silent p.E246E 0.66 TCGA-EE-A2M6-06 6 24596309 24596309 G A KIAA0319 Missense_Mutation p.S198F 0.18 deleterious(0) possibly_damaging(0.729) TCGA-EE-A2M6-06 6 26509210 26509210 G A BTN1A1 Nonsense_Mutation p.W463* 0.34 TCGA-EE-A2M6-06 6 27216986 27216986 C T PRSS16 Missense_Mutation p.R149C 0.65 deleterious(0) probably_damaging(0.953) TCGA-EE-A2M6-06 6 30071943 30071943 C T TRIM31 Nonsense_Mutation p.W320* 0.25 TCGA-EE-A2M6-06 6 30135034 30135034 C T TRIM15 Missense_Mutation p.L155F 0.64 deleterious(0.04) benign(0.189) TCGA-EE-A2M6-06 6 31084720 31084720 G A CDSN Silent p.D224D 0.51 TCGA-EE-A2M6-06 6 33141489 33141489 G A COL11A2 Missense_Mutation p.P787S 0.53 benign(0) TCGA-EE-A2M6-06 6 33694580 33694580 G A IP6K3 Missense_Mutation p.P173S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 6 35289056 35289056 G A DEF6 Missense_Mutation p.G589R 0.61 tolerated(0.26) benign(0.024) TCGA-EE-A2M6-06 6 36930773 36930773 T C PI16 Missense_Mutation p.F219L 0.56 tolerated(0.26) benign(0) TCGA-EE-A2M6-06 6 37414140 37414140 C T CMTR1 Missense_Mutation p.S120F 0.60 deleterious(0) probably_damaging(0.995) TCGA-EE-A2M6-06 6 38810600 38810600 C T DNAH8 Missense_Mutation p.P1372L 0.28 benign(0.039) TCGA-EE-A2M6-06 6 40360351 40360351 C T LRFN2 Silent p.K567K 0.19 TCGA-EE-A2M6-06 6 42016386 42016386 C T TAF8 5'Flank 0.59 TCGA-EE-A2M6-06 6 42200500 42200500 G A TRERF1 Missense_Mutation p.S1066L 0.53 deleterious(0) benign(0) TCGA-EE-A2M6-06 6 43623367 43623367 C T RSPH9 Silent p.I139I 0.64 TCGA-EE-A2M6-06 6 46821636 46821636 C T GPR116 3'UTR 0.53 TCGA-EE-A2M6-06 6 46874491 46874491 G A GPR116 Silent p.S3S 0.70 TCGA-EE-A2M6-06 6 47682499 47682499 C T GPR115 Silent p.F506F 0.25 TCGA-EE-A2M6-06 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.22 deleterious(0) probably_damaging(0.934) TCGA-EE-A2M6-06 6 57472412 57472412 T C PRIM2 3'UTR 0.20 TCGA-EE-A2M6-06 6 70978560 70978560 G A COL9A1 Missense_Mutation p.P412S 0.88 probably_damaging(0.998) TCGA-EE-A2M6-06 6 71569898 71569898 C T SMAP1 Intron 0.80 TCGA-EE-A2M6-06 7 100179958 100179958 G A LRCH4 Silent p.A115A 0.34 TCGA-EE-A2M6-06 7 100198319 100198319 G A FBXO24 Missense_Mutation p.G552R 0.75 tolerated_low_confidence(0.29) probably_damaging(0.953) TCGA-EE-A2M6-06 7 100352897 100352897 C T ZAN Missense_Mutation p.S1058L 0.63 unknown(0) TCGA-EE-A2M6-06 7 100699543 100699543 G A MUC17 Missense_Mutation p.E4478K 0.35 unknown(0) TCGA-EE-A2M6-06 7 111503501 111503501 C T DOCK4 Silent p.V800V 0.64 TCGA-EE-A2M6-06 7 11418889 11418889 C T THSD7A Missense_Mutation p.E1537K 0.59 deleterious(0) benign(0.345) TCGA-EE-A2M6-06 7 117251635 117251635 G A CFTR Missense_Mutation p.G1047D 0.25 deleterious(0) benign(0.119) TCGA-EE-A2M6-06 7 120387884 120387884 G A KCND2 Missense_Mutation p.G622E 0.54 tolerated_low_confidence(0.07) benign(0.017) TCGA-EE-A2M6-06 7 126249496 126249496 C T GRM8 Missense_Mutation p.D472N 0.67 tolerated(0.53) probably_damaging(0.913) TCGA-EE-A2M6-06 7 129049373 129049373 T C AHCYL2 Missense_Mutation p.V451A 0.71 deleterious(0) possibly_damaging(0.879) TCGA-EE-A2M6-06 7 134222378 134222378 G A AKR1B10 Missense_Mutation p.E236K 0.61 tolerated(0.32) benign(0.341) TCGA-EE-A2M6-06 7 137237207 137237207 C T DGKI Silent p.R685R 0.67 TCGA-EE-A2M6-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M6-06 7 141736730 141736730 C T MGAM Silent p.F728F 0.29 TCGA-EE-A2M6-06 7 141799452 141799452 C G MGAM Missense_Mutation p.P1701A 0.21 tolerated(0.43) benign(0.001) TCGA-EE-A2M6-06 7 142583338 142583338 G A TRPV6 5'UTR 0.69 TCGA-EE-A2M6-06 7 142836800 142836800 G A PIP 3'UTR 0.72 TCGA-EE-A2M6-06 7 143453320 143453320 C T CTAGE6 Missense_Mutation p.D478N 0.16 tolerated(0.09) benign(0.222) TCGA-EE-A2M6-06 7 143771369 143771369 C T OR2A25 Silent p.G19G 0.66 TCGA-EE-A2M6-06 7 143771444 143771444 C T OR2A25 Silent p.I44I 0.27 TCGA-EE-A2M6-06 7 148978696 148978696 C T ZNF783 Silent p.I301I 0.26 TCGA-EE-A2M6-06 7 149172261 149172261 G A ZNF746 Silent p.F384F 0.25 TCGA-EE-A2M6-06 7 150217497 150217497 C T GIMAP7 Silent p.F145F 0.33 TCGA-EE-A2M6-06 7 150269283 150269283 G A GIMAP4 Missense_Mutation p.G42E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 7 150324733 150324733 G A GIMAP6 3'UTR 0.25 TCGA-EE-A2M6-06 7 151791498 151791498 C T GALNT11 Silent p.G62G 0.29 TCGA-EE-A2M6-06 7 156967666 156967666 G A UBE3C Silent p.L132L 0.15 TCGA-EE-A2M6-06 7 27209134 27209134 G A RP1-170O19.20 Intron 0.32 TCGA-EE-A2M6-06 7 44579277 44579277 A G NPC1L1 Missense_Mutation p.V240A 0.53 tolerated(0.86) benign(0.007) TCGA-EE-A2M6-06 7 48559869 48559869 G T ABCA13 Missense_Mutation p.W4677L 0.18 possibly_damaging(0.629) TCGA-EE-A2M6-06 7 4899855 4899855 G A PAPOLB Silent p.G528G 0.42 TCGA-EE-A2M6-06 7 50097584 50097584 C A ZPBP Splice_Site p.X163_splice 0.43 TCGA-EE-A2M6-06 7 53103784 53103784 G A POM121L12 Silent p.G140G 0.63 TCGA-EE-A2M6-06 7 53104076 53104076 C T POM121L12 Missense_Mutation p.P238S 0.20 tolerated(0.06) possibly_damaging(0.82) TCGA-EE-A2M6-06 7 64852833 64852833 G T ZNF92 Missense_Mutation p.D8Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 7 71175773 71175773 C T WBSCR17 Silent p.L510L 0.24 TCGA-EE-A2M6-06 7 80303373 80303373 G A CD36 Silent p.L443L 0.61 TCGA-EE-A2M6-06 7 82582544 82582544 G A PCLO Silent p.S2575S 0.64 TCGA-EE-A2M6-06 7 82785130 82785130 C T PCLO Missense_Mutation p.R276Q 0.65 unknown(0) TCGA-EE-A2M6-06 7 97488681 97488681 G A ASNS Missense_Mutation p.P173S 0.64 tolerated(0.98) benign(0) TCGA-EE-A2M6-06 8 105361671 105361671 C T DCSTAMP Silent p.F297F 0.45 TCGA-EE-A2M6-06 8 105367390 105367390 C T DCSTAMP Missense_Mutation p.R439W 0.34 deleterious(0) possibly_damaging(0.517) TCGA-EE-A2M6-06 8 105405178 105405178 T C DPYS Missense_Mutation p.N426S 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2M6-06 8 106814722 106814722 G A ZFPM2 Silent p.T804T 0.50 TCGA-EE-A2M6-06 8 110984919 110984919 C T KCNV1 Missense_Mutation p.G187R 0.48 tolerated(0.3) benign(0.073) TCGA-EE-A2M6-06 8 113960107 113960107 C T CSMD3 Splice_Site p.X474_splice 0.47 TCGA-EE-A2M6-06 8 118184799 118184799 T C SLC30A8 Missense_Mutation p.V330A 0.43 deleterious(0.02) possibly_damaging(0.559) TCGA-EE-A2M6-06 8 118184941 118184941 C T SLC30A8 3'UTR 0.42 TCGA-EE-A2M6-06 8 121282290 121282290 G A COL14A1 Silent p.K1030K 0.43 TCGA-EE-A2M6-06 8 12878930 12878930 C T KIAA1456 Missense_Mutation p.R248C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 8 131916094 131916094 C T ADCY8 Missense_Mutation p.R612K 0.57 tolerated(0.19) benign(0.056) TCGA-EE-A2M6-06 8 133953646 133953646 C T TG Nonsense_Mutation p.Q1698* 0.40 TCGA-EE-A2M6-06 8 135614509 135614509 G A ZFAT Nonsense_Mutation p.Q485* 0.47 TCGA-EE-A2M6-06 8 136594218 136594218 C T KHDRBS3 Missense_Mutation p.R237W 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2M6-06 8 139255187 139255187 C T FAM135B Missense_Mutation p.E223K 0.40 deleterious(0.01) benign(0.269) TCGA-EE-A2M6-06 8 139642950 139642950 G A COL22A1 Silent p.I1217I 0.40 TCGA-EE-A2M6-06 8 144126123 144126123 G A C8orf31 Missense_Mutation p.G82R 0.47 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2M6-06 8 145745204 145745204 C T LRRC14 Missense_Mutation p.P32L 0.48 deleterious(0) possibly_damaging(0.625) TCGA-EE-A2M6-06 8 15998507 15998507 G A MSR1 Intron 0.44 TCGA-EE-A2M6-06 8 16026061 16026061 G A MSR1 Missense_Mutation p.S179F 0.42 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2M6-06 8 17843498 17843498 C T PCM1 Missense_Mutation p.H1438Y 0.52 deleterious(0) benign(0.15) TCGA-EE-A2M6-06 8 22069338 22069338 C T BMP1 3'UTR 0.33 TCGA-EE-A2M6-06 8 22460140 22460140 G A C8orf58 Missense_Mutation p.D324N 0.36 tolerated(0.21) benign(0.009) TCGA-EE-A2M6-06 8 25899683 25899683 C T EBF2 Silent p.A72A 0.39 TCGA-EE-A2M6-06 8 2813132 2813132 C T CSMD1 Missense_Mutation p.G3325R 0.43 probably_damaging(1) TCGA-EE-A2M6-06 8 2944702 2944702 C T CSMD1 Missense_Mutation p.R2464Q 0.58 possibly_damaging(0.574) TCGA-EE-A2M6-06 8 3038658 3038658 G A CSMD1 Missense_Mutation p.A1900V 0.53 probably_damaging(0.998) TCGA-EE-A2M6-06 8 3200845 3200845 G A CSMD1 Missense_Mutation p.T1201I 0.50 possibly_damaging(0.783) TCGA-EE-A2M6-06 8 3265485 3265485 T C CSMD1 Missense_Mutation p.I669M 0.30 possibly_damaging(0.776) TCGA-EE-A2M6-06 8 36780057 36780057 G A KCNU1 Silent p.G882G 0.48 TCGA-EE-A2M6-06 8 39103631 39103641 AAGGATAATTA - ADAM32 Frame_Shift_Del p.R617Gfs*17 0.20 TCGA-EE-A2M6-06 8 39613372 39613372 G A ADAM2 Missense_Mutation p.P558S 0.32 tolerated(0.51) benign(0.007) TCGA-EE-A2M6-06 8 39627040 39627040 A T ADAM2 Missense_Mutation p.H361Q 0.42 tolerated(0.16) benign(0.038) TCGA-EE-A2M6-06 8 39836622 39836622 C T IDO2 Missense_Mutation p.R91W 0.41 deleterious(0) probably_damaging(0.996) TCGA-EE-A2M6-06 8 41530399 41530399 G A ANK1 Silent p.S1564S 0.24 TCGA-EE-A2M6-06 8 55539216 55539216 C T RP1 Missense_Mutation p.P925L 0.34 tolerated(0.08) benign(0.01) TCGA-EE-A2M6-06 8 55540928 55540928 G A RP1 Missense_Mutation p.E1496K 0.45 tolerated(1) benign(0.002) TCGA-EE-A2M6-06 8 56436609 56436609 A G XKR4 Silent p.E592E 0.49 TCGA-EE-A2M6-06 8 6690401 6690401 T C GS1-24F4.2 5'Flank 0.54 TCGA-EE-A2M6-06 8 67039647 67039647 G A TRIM55 Silent p.R48R 0.38 TCGA-EE-A2M6-06 8 71056961 71056961 G A NCOA2 Missense_Mutation p.P910S 0.41 tolerated(0.07) probably_damaging(1) TCGA-EE-A2M6-06 8 77776180 77776180 G A ZFHX4 Missense_Mutation p.M3410I 0.59 possibly_damaging(0.758) TCGA-EE-A2M6-06 8 86250633 86250633 T G CA1 Missense_Mutation p.N28T 0.48 deleterious(0) benign(0.297) TCGA-EE-A2M6-06 8 95178082 95178082 G A CDH17 Nonsense_Mutation p.Q397* 0.45 TCGA-EE-A2M6-06 8 95272505 95272505 T A GEM Missense_Mutation p.Y76F 0.39 tolerated(0.22) benign(0.01) TCGA-EE-A2M6-06 8 98731362 98731362 C T MTDH Missense_Mutation p.S489F 0.41 deleterious(0) possibly_damaging(0.623) TCGA-EE-A2M6-06 9 102784421 102784421 C A ERP44 Missense_Mutation p.G125V 0.88 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M6-06 9 107332301 107332301 G A OR13C8 Missense_Mutation p.G285R 0.91 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2M6-06 9 107380129 107380129 G A OR13C9 Silent p.A119A 0.88 TCGA-EE-A2M6-06 9 117694 117694 G A FOXD4 Silent p.R142R 0.80 TCGA-EE-A2M6-06 9 125390912 125390912 C T OR1B1 Silent p.K301K 0.84 TCGA-EE-A2M6-06 9 130477870 130477870 T G PTRH1 Missense_Mutation p.M17L 0.18 tolerated_low_confidence(0.23) benign(0.001) TCGA-EE-A2M6-06 9 131559354 131559354 C T TBC1D13 Missense_Mutation p.S135F 0.89 deleterious(0.02) benign(0.067) TCGA-EE-A2M6-06 9 135158696 135158696 G A SETX Silent p.F2167F 0.88 TCGA-EE-A2M6-06 9 136305490 136305490 C T ADAMTS13 Silent p.V604V 0.78 TCGA-EE-A2M6-06 9 136323094 136323094 A C ADAMTS13 Missense_Mutation p.T1319P 0.89 tolerated(0.25) benign(0.001) TCGA-EE-A2M6-06 9 136505042 136505042 G A DBH Silent p.R138R 0.95 TCGA-EE-A2M6-06 9 140005049 140005049 G A DPP7 3'UTR 0.89 TCGA-EE-A2M6-06 9 15191202 15191202 A C TTC39B Missense_Mutation p.F328V 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A2M6-06 9 17309068 17309068 T G CNTLN Missense_Mutation p.L387V 0.83 deleterious(0) probably_damaging(0.998) TCGA-EE-A2M6-06 9 23705041 23705041 G C ELAVL2 Missense_Mutation p.S121C 0.89 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A2M6-06 9 34401682 34401682 G A FAM219A Silent p.S127S 0.92 TCGA-EE-A2M6-06 9 34401684 34401684 A G FAM219A Missense_Mutation p.S127P 0.92 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2M6-06 9 73235016 73235016 G A TRPM3 Missense_Mutation p.S690F 0.84 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A2M6-06 X 105280841 105280841 G A SERPINA7 Missense_Mutation p.P70L 0.97 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A2M6-06 X 115304558 115304558 G A AGTR2 Missense_Mutation p.G342E 0.93 tolerated(0.38) benign(0.034) TCGA-EE-A2M6-06 X 130409561 130409561 G A IGSF1 Silent p.I1030I 0.91 TCGA-EE-A2M6-06 X 154157318 154157318 G A F8 Missense_Mutation p.P1583S 0.89 tolerated(0.12) benign(0.007) TCGA-EE-A2M6-06 X 16669154 16669154 G A S100G Missense_Mutation p.E9K 0.89 tolerated(0.64) probably_damaging(0.953) TCGA-EE-A2M6-06 X 2406910 2406910 G A ZBED1 Silent p.A617A 0.44 TCGA-EE-A2M6-06 X 27999038 27999038 C T DCAF8L1 Silent p.A138A 0.86 TCGA-EE-A2M6-06 X 36007664 36007664 A T CXorf22 3'UTR 0.93 TCGA-EE-A2M6-06 X 53965565 53965565 G A PHF8 3'UTR 0.85 TCGA-EE-A2M6-06 X 69424971 69424971 C T DGAT2L6 3'UTR 0.96 TCGA-EE-A2M6-06 X 83129238 83129238 G A CYLC1 Missense_Mutation p.D508N 1.00 tolerated(0.13) benign(0.07) TCGA-EE-A2M6-06 X 91675526 91675526 C T PCDH11X Intron 0.82 TCGA-EE-A2M6-06 Y 14889989 14889989 G A USP9Y Silent p.R892R 0.82 TCGA-EE-A2M7-06 10 29769471 29769471 G A SVIL Missense_Mutation p.T1791M 0.25 deleterious(0) probably_damaging(0.985) TCGA-EE-A2M7-06 11 122953836 122953836 G A CLMP Silent p.N212N 0.11 TCGA-EE-A2M7-06 11 124792340 124792340 G A HEPACAM Nonsense_Mutation p.R298* 0.21 TCGA-EE-A2M7-06 11 18195349 18195349 G A MRGPRX4 Silent p.A182A 0.17 TCGA-EE-A2M7-06 11 5809489 5809489 C A OR52N1 Silent p.V186V 0.48 TCGA-EE-A2M7-06 12 120750786 120750786 C A SIRT4 Missense_Mutation p.L298M 0.24 deleterious(0.02) benign(0.126) TCGA-EE-A2M7-06 12 121593937 121593937 G A P2RX7 Missense_Mutation p.R117Q 0.14 tolerated(0.25) benign(0.01) TCGA-EE-A2M7-06 12 13717349 13717349 G A GRIN2B Silent p.F941F 0.15 TCGA-EE-A2M7-06 12 5020526 5020526 C A KCNA1 5'UTR 0.26 TCGA-EE-A2M7-06 12 55945074 55945074 C A OR6C4 Missense_Mutation p.Q22K 0.16 tolerated_low_confidence(0.05) benign(0.048) TCGA-EE-A2M7-06 14 21360234 21360234 G A RNASE3 Missense_Mutation p.G130E 0.54 tolerated(0.35) benign(0.008) TCGA-EE-A2M7-06 14 76437468 76437468 C T TGFB3 Splice_Site p.X216_splice 0.15 TCGA-EE-A2M7-06 15 28386694 28386694 C G HERC2 Missense_Mutation p.G3967R 0.19 probably_damaging(1) TCGA-EE-A2M7-06 15 39544862 39544862 A G C15orf54 Missense_Mutation p.M176V 0.10 tolerated_low_confidence(1) benign(0) TCGA-EE-A2M7-06 15 42041031 42041031 C T MGA Silent p.H1803H 0.19 TCGA-EE-A2M7-06 15 90347174 90347174 G A ANPEP Silent p.F413F 0.38 TCGA-EE-A2M7-06 16 2763567 2763567 C T PRSS27 Missense_Mutation p.C214Y 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2M7-06 16 3169852 3169852 C A ZNF205 Nonsense_Mutation p.C397* 0.11 TCGA-EE-A2M7-06 16 49672451 49672451 G T ZNF423 Silent p.S204S 0.25 TCGA-EE-A2M7-06 16 67859130 67859130 G A TSNAXIP1 Missense_Mutation p.E203K 0.09 deleterious(0.04) benign(0.074) TCGA-EE-A2M7-06 17 26874678 26874678 A G UNC119 Intron 0.34 TCGA-EE-A2M7-06 17 28769357 28769358 AA - CPD Frame_Shift_Del p.N755Lfs*3 0.14 TCGA-EE-A2M7-06 17 3337014 3337014 C T OR1E2 Missense_Mutation p.G41E 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A2M7-06 17 43555412 43555412 C T PLEKHM1 Missense_Mutation p.M50I 0.27 deleterious(0.01) possibly_damaging(0.472) TCGA-EE-A2M7-06 17 4799999 4799999 G T MINK1 Missense_Mutation p.W1269L 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2M7-06 17 58144970 58144970 C T HEATR6 Missense_Mutation p.E355K 0.14 tolerated(0.8) benign(0.002) TCGA-EE-A2M7-06 18 10488086 10488086 G A APCDD1 3'UTR 0.18 TCGA-EE-A2M7-06 18 3116374 3116374 C T MYOM1 Silent p.Q1086Q 0.26 TCGA-EE-A2M7-06 18 43675070 43675070 A C ATP5A1 Missense_Mutation p.F30V 0.21 tolerated_low_confidence(0.41) benign(0.001) TCGA-EE-A2M7-06 19 12767424 12767424 G A MAN2B1 Silent p.F535F 0.15 TCGA-EE-A2M7-06 19 14806397 14806397 C T ZNF333 Silent p.P49P 0.26 TCGA-EE-A2M7-06 19 16040288 16040288 G A CYP4F11 Missense_Mutation p.R108W 0.15 deleterious(0) benign(0.24) TCGA-EE-A2M7-06 19 22154362 22154362 A G ZNF208 Silent p.Y1158Y 0.10 TCGA-EE-A2M7-06 19 22363738 22363738 C T ZNF676 Missense_Mutation p.G261R 0.29 deleterious(0) benign(0.193) TCGA-EE-A2M7-06 19 22939264 22939264 C T ZNF99 3'Flank 0.42 TCGA-EE-A2M7-06 19 22940294 22940294 T A ZNF99 Missense_Mutation p.K806I 0.22 tolerated(0.21) benign(0.192) TCGA-EE-A2M7-06 19 30433541 30433541 T A URI1 Missense_Mutation p.D29E 0.54 tolerated(1) benign(0.417) TCGA-EE-A2M7-06 19 31039944 31039944 C A ZNF536 Missense_Mutation p.H1140N 0.22 tolerated_low_confidence(0.51) benign(0.021) TCGA-EE-A2M7-06 19 48343031 48343031 C T CRX Missense_Mutation p.P236L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2M7-06 19 55445871 55445871 G A NLRP7 Silent p.F819F 0.12 TCGA-EE-A2M7-06 1 120307194 120307194 C T HMGCS2 Missense_Mutation p.V54M 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2M7-06 1 158614069 158614069 C T SPTA1 Missense_Mutation p.D1438N 0.10 tolerated(0.06) probably_damaging(0.92) TCGA-EE-A2M7-06 1 17046577 17046577 A G ESPNP RNA 0.14 TCGA-EE-A2M7-06 1 172501623 172501623 T G SUCO 5'Flank 0.14 TCGA-EE-A2M7-06 1 46818685 46818685 G A NSUN4 Silent p.G246G 0.09 TCGA-EE-A2M7-06 20 33122560 33122560 C A DYNLRB1 Silent p.R70R 0.12 TCGA-EE-A2M7-06 21 45825902 45825902 C T TRPM2 Silent p.I924I 0.18 TCGA-EE-A2M7-06 22 25255689 25255689 G A SGSM1 Missense_Mutation p.D270N 0.24 tolerated(0.06) probably_damaging(0.922) TCGA-EE-A2M7-06 22 32464543 32464543 C T SLC5A1 Missense_Mutation p.L145F 0.28 tolerated(0.1) possibly_damaging(0.81) TCGA-EE-A2M7-06 2 131116970 131116970 G C PTPN18 Missense_Mutation p.G94R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2M7-06 2 166231203 166231203 A G SCN2A Silent p.V1327V 0.12 TCGA-EE-A2M7-06 2 179597184 179597184 G T TTN Missense_Mutation p.A5535E 0.16 TCGA-EE-A2M7-06 2 189904130 189904130 C T COL5A2 Missense_Mutation p.D1265N 0.34 unknown(0) TCGA-EE-A2M7-06 2 219137441 219137441 C A PNKD Intron 0.29 TCGA-EE-A2M7-06 2 74654713 74654713 G A RTKN Nonsense_Mutation p.R365* 0.15 TCGA-EE-A2M7-06 2 99149957 99149957 A G INPP4A Missense_Mutation p.E90G 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M7-06 2 99614636 99614636 G T TSGA10 3'UTR 0.12 TCGA-EE-A2M7-06 3 155199996 155199996 G A PLCH1 Silent p.P1281P 0.15 TCGA-EE-A2M7-06 3 65342698 65342698 G T MAGI1 Silent p.P1248P 0.14 TCGA-EE-A2M7-06 4 139163201 139163201 G A SLC7A11 Missense_Mutation p.S8F 0.21 deleterious(0.01) benign(0.016) TCGA-EE-A2M7-06 5 112175907 112175907 C T APC Missense_Mutation p.S1539L 0.14 benign(0.008) TCGA-EE-A2M7-06 5 133657520 133657520 G C CDKL3 Missense_Mutation p.S205C 0.14 deleterious(0) probably_damaging(0.985) TCGA-EE-A2M7-06 5 168271604 168271604 C T SLIT3 Missense_Mutation p.R181H 0.61 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A2M7-06 5 175927043 175927043 C T FAF2 Missense_Mutation p.P351S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M7-06 5 175927084 175927084 C G FAF2 Missense_Mutation p.I364M 0.11 deleterious(0) possibly_damaging(0.837) TCGA-EE-A2M7-06 5 21975347 21975347 G C CDH12 Missense_Mutation p.L127V 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2M7-06 5 41012706 41012706 C A MROH2B Missense_Mutation p.Q1038H 0.18 tolerated(0.33) benign(0.005) TCGA-EE-A2M7-06 5 55206397 55206397 G A IL31RA Silent p.L513L 0.16 TCGA-EE-A2M7-06 5 76734149 76734149 T C WDR41 Missense_Mutation p.Y307C 0.23 deleterious(0) probably_damaging(0.95) TCGA-EE-A2M7-06 5 78610271 78610271 C T JMY Silent p.P752P 0.16 TCGA-EE-A2M7-06 5 80171676 80171676 C A MSH3 Missense_Mutation p.H1137N 0.08 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A2M7-06 6 25813338 25813338 G T SLC17A1 Silent p.S240S 0.15 TCGA-EE-A2M7-06 6 31323218 31323218 G C HLA-B Silent p.T257T 0.17 TCGA-EE-A2M7-06 7 119914938 119914938 C T KCND2 Silent p.F84F 0.12 TCGA-EE-A2M7-06 7 120906769 120906769 C T CPED1 Missense_Mutation p.P847L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M7-06 7 126173763 126173763 A G GRM8 Missense_Mutation p.L558P 0.14 tolerated(0.28) possibly_damaging(0.535) TCGA-EE-A2M7-06 7 128505545 128505545 C T ATP6V1F Silent p.I119I 0.11 TCGA-EE-A2M7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.71 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M7-06 7 141799419 141799419 G A MGAM Missense_Mutation p.D1690N 0.49 tolerated(0.13) benign(0.012) TCGA-EE-A2M7-06 8 74516060 74516060 G A STAU2 Silent p.S310S 0.22 TCGA-EE-A2M7-06 9 117846627 117846627 C A TNC Silent p.L664L 0.15 TCGA-EE-A2M7-06 9 131140306 131140306 C T URM1 Intron 0.36 TCGA-EE-A2M7-06 9 21166051 21166051 C T IFNA21 Silent p.R187R 0.16 TCGA-EE-A2M7-06 9 32631651 32631651 C T TAF1L Silent p.S1309S 0.37 TCGA-EE-A2M7-06 9 33328583 33328583 C T NFX1 Silent p.F637F 0.15 TCGA-EE-A2M7-06 9 97887370 97887370 G T FANCC Missense_Mutation p.Q332K 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-EE-A2M7-06 X 123519727 123519727 C T TENM1 Missense_Mutation p.R1959Q 0.61 deleterious(0.04) benign(0.018) TCGA-EE-A2M8-06 10 124457771 124457771 C T C10orf120 Silent p.V162V 0.13 TCGA-EE-A2M8-06 10 61819111 61819111 G A ANK3 Nonsense_Mutation p.R4225* 0.11 TCGA-EE-A2M8-06 10 7679332 7679332 C T ITIH5 Missense_Mutation p.E171K 0.14 deleterious(0.03) possibly_damaging(0.46) TCGA-EE-A2M8-06 11 108381787 108381787 C T EXPH5 Missense_Mutation p.E1483K 0.12 tolerated(0.17) benign(0.01) TCGA-EE-A2M8-06 11 1467078 1467078 G A BRSK2 Silent p.T435T 0.14 TCGA-EE-A2M8-06 11 55541597 55541597 G A OR5D13 Missense_Mutation p.M228I 0.15 tolerated(0.53) benign(0.001) TCGA-EE-A2M8-06 11 5842271 5842271 C T OR52N2 Missense_Mutation p.R236C 0.09 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A2M8-06 11 66618319 66618319 G A PC Missense_Mutation p.P767S 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2M8-06 11 66618334 66618334 G A PC Missense_Mutation p.R762C 0.25 deleterious(0) possibly_damaging(0.866) TCGA-EE-A2M8-06 11 73681103 73681103 C T DNAJB13 Missense_Mutation p.P299S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2M8-06 12 120585034 120585034 C T GCN1L1 Missense_Mutation p.R1590K 0.25 benign(0.006) TCGA-EE-A2M8-06 12 120587453 120587453 G A GCN1L1 Silent p.S1501S 0.11 TCGA-EE-A2M8-06 12 52881517 52881517 C T KRT6A Missense_Mutation p.S561N 0.20 tolerated(0.15) unknown(0) TCGA-EE-A2M8-06 12 56822881 56822881 G A TIMELESS Missense_Mutation p.H364Y 0.26 tolerated(0.95) benign(0.002) TCGA-EE-A2M8-06 12 6103338 6103338 G A VWF Silent p.F2096F 0.28 TCGA-EE-A2M8-06 13 19748240 19748240 C T TUBA3C Silent p.Q372Q 0.14 TCGA-EE-A2M8-06 13 25376549 25376549 G A RNF17 Missense_Mutation p.E597K 0.09 tolerated(0.33) benign(0.001) TCGA-EE-A2M8-06 14 35780020 35780020 C T PSMA6 Missense_Mutation p.P110S 0.16 deleterious(0.05) possibly_damaging(0.655) TCGA-EE-A2M8-06 14 35780021 35780021 C T PSMA6 Missense_Mutation p.P110L 0.16 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2M8-06 14 77718139 77718139 C T TMEM63C Silent p.L682L 0.12 TCGA-EE-A2M8-06 15 24922338 24922338 C T NPAP1 Missense_Mutation p.P442S 0.14 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A2M8-06 15 51350451 51350451 A T TNFAIP8L3 Nonsense_Mutation p.L169* 0.10 TCGA-EE-A2M8-06 15 54685348 54685348 G A UNC13C Missense_Mutation p.D1606N 0.15 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-EE-A2M8-06 15 70368486 70368486 C T TLE3 Silent p.A82A 0.12 TCGA-EE-A2M8-06 15 71447214 71447214 C T THSD4 Silent p.F14F 0.14 TCGA-EE-A2M8-06 15 78211577 78211577 C T RP11-114H24.7 Intron 0.12 TCGA-EE-A2M8-06 15 79291148 79291148 C T RASGRF1 Silent p.R938R 0.15 TCGA-EE-A2M8-06 15 89182723 89182723 C T ISG20 Silent p.F42F 0.14 TCGA-EE-A2M8-06 15 94841644 94841644 C T MCTP2 Silent p.L50L 0.10 TCGA-EE-A2M8-06 16 20492171 20492171 G A ACSM2A Silent p.E479E 0.14 TCGA-EE-A2M8-06 16 25258248 25258248 A T ZKSCAN2 Missense_Mutation p.D423E 0.16 tolerated(1) probably_damaging(0.938) TCGA-EE-A2M8-06 16 2871436 2871436 G A PRSS21 Missense_Mutation p.G259R 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2M8-06 16 31284771 31284771 G A ITGAM Missense_Mutation p.D264N 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2M8-06 16 58001187 58001187 A G CNGB1 Silent p.L2L 0.11 TCGA-EE-A2M8-06 16 72174358 72174358 C T PMFBP1 Missense_Mutation p.D254N 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2M8-06 16 76555957 76555957 C T CNTNAP4 Missense_Mutation p.S780L 0.10 deleterious(0.02) probably_damaging(1) TCGA-EE-A2M8-06 17 18638497 18638497 G A TRIM16L Silent p.G257G 0.16 TCGA-EE-A2M8-06 17 19288535 19288535 C T MFAP4 Missense_Mutation p.E157K 0.08 deleterious(0) probably_damaging(0.985) TCGA-EE-A2M8-06 17 32959919 32959919 C T TMEM132E Missense_Mutation p.P470L 0.17 deleterious(0.02) benign(0.093) TCGA-EE-A2M8-06 17 36486526 36486526 G A GPR179 Silent p.L976L 0.13 TCGA-EE-A2M8-06 17 38954573 38954573 C T KRT28 Missense_Mutation p.E202K 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2M8-06 17 39623286 39623286 C T KRT32 Missense_Mutation p.E98K 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2M8-06 17 39672200 39672200 C T KRT15 Silent p.E321E 0.10 TCGA-EE-A2M8-06 17 53345447 53345447 G C HLF Missense_Mutation p.G151R 0.15 tolerated(0.16) benign(0.025) TCGA-EE-A2M8-06 17 56565428 56565428 C T HSF5 Missense_Mutation p.E70K 0.19 deleterious(0.03) possibly_damaging(0.641) TCGA-EE-A2M8-06 17 60613535 60613535 G A TLK2 Missense_Mutation p.R123Q 0.21 tolerated_low_confidence(0.54) benign(0.414) TCGA-EE-A2M8-06 17 72916102 72916102 G A USH1G Missense_Mutation p.L277F 0.15 tolerated(0.62) benign(0.113) TCGA-EE-A2M8-06 17 9760794 9760794 C T GLP2R Silent p.I222I 0.16 TCGA-EE-A2M8-06 18 12794451 12794451 C T PTPN2 Silent p.K358K 0.33 TCGA-EE-A2M8-06 18 47808968 47808968 G A CXXC1 Missense_Mutation p.R660C 0.27 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-EE-A2M8-06 18 52546620 52546620 G A RAB27B Silent p.P58P 0.26 TCGA-EE-A2M8-06 19 16910720 16910720 G A NWD1 Silent p.G1161G 0.20 TCGA-EE-A2M8-06 19 36321786 36321786 G A NPHS1 Missense_Mutation p.P1185L 0.09 tolerated(0.12) benign(0.004) TCGA-EE-A2M8-06 19 37428087 37428087 G A ZNF568 Missense_Mutation p.E101K 0.11 tolerated(0.06) possibly_damaging(0.551) TCGA-EE-A2M8-06 19 44681046 44681046 C T ZNF226 Missense_Mutation p.S544L 0.12 tolerated(0.06) probably_damaging(0.963) TCGA-EE-A2M8-06 19 44833712 44833712 G A ZNF112 Missense_Mutation p.H206Y 0.10 deleterious(0.04) benign(0.048) TCGA-EE-A2M8-06 19 48619170 48619170 C G LIG1 Missense_Mutation p.R879P 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2M8-06 19 52249171 52249171 C T FPR1 3'UTR 0.11 TCGA-EE-A2M8-06 19 6974614 6974614 C T EMR4P RNA 0.31 TCGA-EE-A2M8-06 19 8922255 8922255 C T ZNF558 Missense_Mutation p.S304N 0.14 tolerated(0.13) benign(0.021) TCGA-EE-A2M8-06 19 9072100 9072100 C T MUC16 Missense_Mutation p.E5116K 0.12 unknown(0) TCGA-EE-A2M8-06 1 109363229 109363229 C T AKNAD1 Silent p.R729R 0.24 TCGA-EE-A2M8-06 1 1153955 1153955 G A SDF4 Silent p.T265T 0.25 TCGA-EE-A2M8-06 1 11900317 11900317 G A CLCN6 3'UTR 0.35 TCGA-EE-A2M8-06 1 153391621 153391621 G A S100A7A Missense_Mutation p.D48N 0.20 tolerated(0.1) benign(0.145) TCGA-EE-A2M8-06 1 161654957 161654957 G A RPL31P11 RNA 0.40 TCGA-EE-A2M8-06 1 171162617 171162617 G A FMO2 Silent p.R92R 0.31 TCGA-EE-A2M8-06 1 175362984 175362984 T C TNR Missense_Mutation p.T430A 0.10 tolerated(0.06) possibly_damaging(0.824) TCGA-EE-A2M8-06 1 179100501 179100501 G A ABL2 Silent p.F112F 0.21 TCGA-EE-A2M8-06 1 179989667 179989667 A G CEP350 Missense_Mutation p.K920E 0.28 probably_damaging(0.998) TCGA-EE-A2M8-06 1 209805978 209805978 G A LAMB3 Missense_Mutation p.R258C 0.26 deleterious(0) probably_damaging(0.954) TCGA-EE-A2M8-06 1 213134585 213134585 G A VASH2 Missense_Mutation p.M118I 0.21 tolerated(0.53) probably_damaging(0.993) TCGA-EE-A2M8-06 1 216420487 216420487 T C USH2A Missense_Mutation p.N750S 0.27 benign(0.262) TCGA-EE-A2M8-06 1 23689214 23689214 G A ZNF436 Missense_Mutation p.P221S 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2M8-06 1 97278998 97278998 T C PTBP2 3'UTR 0.10 TCGA-EE-A2M8-06 20 19665948 19665948 G A SLC24A3 Missense_Mutation p.E423K 0.18 tolerated(0.41) benign(0.367) TCGA-EE-A2M8-06 20 19673952 19673952 C T SLC24A3 Silent p.F458F 0.10 TCGA-EE-A2M8-06 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.27 deleterious(0.03) benign(0.256) TCGA-EE-A2M8-06 20 24995863 24995863 C T ACSS1 Missense_Mutation p.G417E 0.12 deleterious(0) probably_damaging(0.992) TCGA-EE-A2M8-06 20 2843503 2843503 C T VPS16 Silent p.F418F 0.18 TCGA-EE-A2M8-06 20 31680353 31680353 C T BPIFB4 Silent p.P411P 0.20 TCGA-EE-A2M8-06 20 9404488 9404488 C T PLCB4 Nonsense_Mutation p.Q793* 0.21 TCGA-EE-A2M8-06 21 46032614 46032614 C T KRTAP10-8 Silent p.T199T 0.17 TCGA-EE-A2M8-06 22 50558939 50558939 G A MOV10L1 Missense_Mutation p.R488K 0.08 tolerated(0.13) benign(0.14) TCGA-EE-A2M8-06 2 100925677 100925677 A T LONRF2 Missense_Mutation p.D230E 0.19 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2M8-06 2 128262652 128262652 G A IWS1 Missense_Mutation p.S276L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-EE-A2M8-06 2 174062751 174062751 C T MLTK Intron 0.21 TCGA-EE-A2M8-06 2 179437377 179437377 A C TTN Missense_Mutation p.S24494R 0.23 TCGA-EE-A2M8-06 2 183095762 183095762 C T PDE1A Missense_Mutation p.D188N 0.22 tolerated(0.25) probably_damaging(0.944) TCGA-EE-A2M8-06 2 69049632 69049632 C T ARHGAP25 Missense_Mutation p.A454V 0.24 tolerated(0.14) benign(0.027) TCGA-EE-A2M8-06 2 74906773 74906773 G T SEMA4F Missense_Mutation p.V584F 0.12 tolerated(0.05) possibly_damaging(0.594) TCGA-EE-A2M8-06 3 122474149 122474149 G A HSPBAP1 Silent p.F233F 0.17 TCGA-EE-A2M8-06 3 129237958 129237958 A G IFT122 Missense_Mutation p.I1185V 0.13 tolerated(0.35) benign(0.002) TCGA-EE-A2M8-06 3 148759958 148759958 G A HLTF Missense_Mutation p.P731L 0.15 tolerated(0.09) benign(0.06) TCGA-EE-A2M8-06 3 26751139 26751139 C T LRRC3B 5'UTR 0.17 TCGA-EE-A2M8-06 3 35723236 35723236 C T ARPP21 5'UTR 0.20 TCGA-EE-A2M8-06 3 49679978 49679978 C T BSN Missense_Mutation p.P304L 0.38 unknown(0) TCGA-EE-A2M8-06 3 52130714 52130714 G A POC1A Silent p.F332F 0.15 TCGA-EE-A2M8-06 3 52836750 52836750 G A ITIH3 Missense_Mutation p.R546Q 0.26 tolerated(1) benign(0.001) TCGA-EE-A2M8-06 3 77629266 77629266 A T ROBO2 Missense_Mutation p.I849F 0.11 deleterious(0.02) benign(0.227) TCGA-EE-A2M8-06 4 152593947 152593947 G A PET112 Silent p.L504L 0.24 TCGA-EE-A2M8-06 4 155156816 155156816 G A DCHS2 Silent p.I2541I 0.16 TCGA-EE-A2M8-06 4 166416768 166416768 C G CPE Nonsense_Mutation p.S424* 0.10 TCGA-EE-A2M8-06 4 187197534 187197534 G A F11 Missense_Mutation p.E249K 0.10 tolerated(0.07) benign(0.035) TCGA-EE-A2M8-06 4 47907310 47907310 G A NFXL1 Nonsense_Mutation p.Q154* 0.09 TCGA-EE-A2M8-06 5 127863582 127863582 C T FBN2 Missense_Mutation p.G172E 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A2M8-06 5 13841027 13841027 G A DNAH5 Silent p.I1899I 0.17 TCGA-EE-A2M8-06 5 140711946 140711946 C G PCDHGA1 Silent p.P565P 0.09 TCGA-EE-A2M8-06 5 35910623 35910623 C T CAPSL Missense_Mutation p.D54N 0.15 tolerated(0.32) benign(0.026) TCGA-EE-A2M8-06 5 36686225 36686225 G A SLC1A3 Missense_Mutation p.E495K 0.11 tolerated(0.06) possibly_damaging(0.889) TCGA-EE-A2M8-06 5 89990022 89990022 G A GPR98 Silent p.R2483R 0.11 TCGA-EE-A2M8-06 6 10956379 10956379 C T SYCP2L Silent p.S689S 0.17 TCGA-EE-A2M8-06 6 137814843 137814843 G A OLIG3 Silent p.H155H 0.15 TCGA-EE-A2M8-06 6 13802496 13802496 A T MCUR1 Missense_Mutation p.D206E 0.15 tolerated(0.24) probably_damaging(0.968) TCGA-EE-A2M8-06 6 159457477 159457477 C T TAGAP Silent p.A526A 0.15 TCGA-EE-A2M8-06 6 31124632 31124632 G A CCHCR1 Missense_Mutation p.P125S 0.15 tolerated(0.06) benign(0.034) TCGA-EE-A2M8-06 6 47847233 47847233 G A PTCHD4 Silent p.F449F 0.14 TCGA-EE-A2M8-06 6 51774107 51774107 G A PKHD1 Missense_Mutation p.S2219L 0.17 deleterious(0.02) benign(0.271) TCGA-EE-A2M8-06 7 122342725 122342725 A T RNF148 Missense_Mutation p.L27H 0.19 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2M8-06 7 128478742 128478742 T C FLNC Silent p.G432G 0.17 TCGA-EE-A2M8-06 7 128489398 128489398 C T FLNC Silent p.G1655G 0.13 TCGA-EE-A2M8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.12 deleterious(0) probably_damaging(0.967) TCGA-EE-A2M8-06 7 147964199 147964199 C T CNTNAP2 Silent p.L1152L 0.21 TCGA-EE-A2M8-06 7 147964200 147964200 T A CNTNAP2 Missense_Mutation p.F1153I 0.21 tolerated(0.54) benign(0.055) TCGA-EE-A2M8-06 7 157691392 157691392 C T PTPRN2 Silent p.L587L 0.09 TCGA-EE-A2M8-06 7 18631231 18631231 C T HDAC9 Missense_Mutation p.H170Y 0.17 tolerated(0.15) possibly_damaging(0.628) TCGA-EE-A2M8-06 7 4825067 4825067 C T AP5Z1 Missense_Mutation p.S318F 0.12 deleterious(0.01) possibly_damaging(0.712) TCGA-EE-A2M8-06 7 86415720 86415720 C T GRM3 Silent p.I204I 0.21 TCGA-EE-A2M8-06 7 87196132 87196132 C T ABCB1 Missense_Mutation p.D167N 0.10 tolerated(0.06) benign(0.065) TCGA-EE-A2M8-06 8 14022128 14022128 C G SGCZ Missense_Mutation p.D170H 0.10 tolerated(0.07) possibly_damaging(0.695) TCGA-EE-A2M8-06 8 23243475 23243475 G A LOXL2 Intron 0.08 TCGA-EE-A2M8-06 8 30464633 30464633 G T GTF2E2 Missense_Mutation p.P195H 0.11 deleterious(0) possibly_damaging(0.846) TCGA-EE-A2M8-06 8 52746112 52746112 A G PCMTD1 Missense_Mutation p.V183A 0.11 deleterious(0) benign(0.278) TCGA-EE-A2M8-06 8 68995598 68995598 G A PREX2 Missense_Mutation p.V668I 0.18 tolerated(0.1) benign(0.005) TCGA-EE-A2M8-06 8 72129059 72129059 G A EYA1 Missense_Mutation p.P410S 0.25 tolerated(0.66) benign(0.147) TCGA-EE-A2M8-06 9 116132413 116132413 C T BSPRY Silent p.I400I 0.21 TCGA-EE-A2M8-06 9 35793053 35793053 C T NPR2 Silent p.F216F 0.13 TCGA-EE-A2M8-06 9 82267644 82267644 T C TLE4 Missense_Mutation p.L176P 0.16 tolerated(0.07) possibly_damaging(0.775) TCGA-EE-A2M8-06 X 104464008 104464008 C T TEX13A Missense_Mutation p.E290K 0.12 tolerated(0.19) possibly_damaging(0.636) TCGA-EE-A2M8-06 X 108708449 108708449 G A GUCY2F Silent p.S318S 0.09 TCGA-EE-A2M8-06 X 115588915 115588915 A - SLC6A14 Frame_Shift_Del p.I586Ffs*12 0.12 TCGA-EE-A2M8-06 X 122538614 122538614 G A GRIA3 Missense_Mutation p.R450Q 0.19 tolerated(0.25) benign(0.004) TCGA-EE-A2M8-06 X 132458257 132458257 G A GPC4 Silent p.L209L 0.10 TCGA-EE-A2M8-06 X 135584969 135584969 G A HTATSF1 Silent p.L201L 0.14 TCGA-EE-A2M8-06 X 144909378 144909378 T A TMEM257 Missense_Mutation p.F61L 0.12 tolerated_low_confidence(0.21) benign(0.294) TCGA-EE-A2M8-06 X 149807437 149807437 G A MTM1 Missense_Mutation p.E156K 0.11 tolerated(1) benign(0.338) TCGA-EE-A2M8-06 X 150348809 150348809 C T GPR50 Missense_Mutation p.P252S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2M8-06 X 26157386 26157386 C T MAGEB18 Missense_Mutation p.S95F 0.18 tolerated(0.23) benign(0.033) TCGA-EE-A2M8-06 X 70387190 70387190 G A NLGN3 Missense_Mutation p.E415K 0.22 tolerated(0.1) possibly_damaging(0.887) TCGA-EE-A2M8-06 X 73064974 73064974 C T XIST RNA 0.14 TCGA-EE-A2M8-06 X 73960047 73960047 G A KIAA2022 Missense_Mutation p.R1449C 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2M8-06 X 73960458 73960458 C T KIAA2022 Missense_Mutation p.E1312K 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 10 101514321 101514321 C T CUTC Missense_Mutation p.L213F 0.21 tolerated(0.15) possibly_damaging(0.727) TCGA-EE-A2MC-06 10 102738085 102738085 G A SEMA4G Missense_Mutation p.E157K 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 10 102748876 102748876 G A C10orf2 Silent p.R303R 0.18 TCGA-EE-A2MC-06 10 102750629 102750629 C T C10orf2 Silent p.I532I 0.17 TCGA-EE-A2MC-06 10 102824142 102824142 C T KAZALD1 Silent p.I212I 0.26 TCGA-EE-A2MC-06 10 103558830 103558830 G A MGEA5 Silent p.P526P 0.19 TCGA-EE-A2MC-06 10 105942240 105942240 G A WDR96 Silent p.L725L 0.12 TCGA-EE-A2MC-06 10 106163540 106163540 G A CCDC147 Missense_Mutation p.R698Q 0.22 deleterious(0.01) benign(0.146) TCGA-EE-A2MC-06 10 106960892 106960892 C T SORCS3 Silent p.V714V 0.20 TCGA-EE-A2MC-06 10 115350562 115350562 G A NRAP Silent p.F1577F 0.16 TCGA-EE-A2MC-06 10 124358529 124358529 G A DMBT1 Missense_Mutation p.E1066K 0.17 deleterious(0) unknown(0) TCGA-EE-A2MC-06 10 124593224 124593224 G A CUZD1 Missense_Mutation p.R539C 0.21 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MC-06 10 1313167 1313167 C T ADARB2 Missense_Mutation p.G392E 0.18 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MC-06 10 135369188 135369188 C T SYCE1 Missense_Mutation p.R248K 0.20 tolerated(1) benign(0.003) TCGA-EE-A2MC-06 10 135438925 135438925 C T FRG2B Missense_Mutation p.R172Q 0.15 tolerated(0.08) benign(0.014) TCGA-EE-A2MC-06 10 26491913 26491913 T A MYO3A Nonsense_Mutation p.L1536* 0.14 TCGA-EE-A2MC-06 10 28149631 28149631 C T ARMC4 Missense_Mutation p.A982T 0.23 tolerated(0.18) benign(0.25) TCGA-EE-A2MC-06 10 33545362 33545362 T G NRP1 Silent p.T232T 0.11 TCGA-EE-A2MC-06 10 34573160 34573160 G A PARD3 Nonsense_Mutation p.R1030* 0.14 TCGA-EE-A2MC-06 10 37508193 37508193 A T ANKRD30A Nonsense_Mutation p.K1129* 0.10 TCGA-EE-A2MC-06 10 48388012 48388012 C T RBP3 Missense_Mutation p.E956K 0.16 tolerated(0.05) benign(0.305) TCGA-EE-A2MC-06 10 5204876 5204876 G A AKR1CL1 Silent p.A67A 0.14 TCGA-EE-A2MC-06 10 52103686 52103686 C T SGMS1 Missense_Mutation p.M63I 0.13 tolerated(0.22) benign(0.004) TCGA-EE-A2MC-06 10 52390613 52390613 C G RP11-50E11.3 RNA 0.20 TCGA-EE-A2MC-06 10 54040660 54040660 C T PRKG1 Silent p.L505L 0.14 TCGA-EE-A2MC-06 10 55626446 55626446 T C PCDH15 Missense_Mutation p.T1225A 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2MC-06 10 55698700 55698700 T A PCDH15 Missense_Mutation p.N1083I 0.09 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2MC-06 10 61014154 61014154 C T FAM13C Missense_Mutation p.R429K 0.23 deleterious(0) probably_damaging(0.917) TCGA-EE-A2MC-06 10 61413501 61413501 A G SLC16A9 Missense_Mutation p.L428S 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 10 61834088 61834088 G A ANK3 Missense_Mutation p.P2184L 0.15 benign(0.041) TCGA-EE-A2MC-06 10 61840357 61840357 C T ANK3 Missense_Mutation p.R1457Q 0.18 benign(0.275) TCGA-EE-A2MC-06 10 61959955 61959955 G A ANK3 Missense_Mutation p.R475C 0.12 probably_damaging(0.998) TCGA-EE-A2MC-06 10 7213004 7213004 C T SFMBT2 Silent p.E810E 0.21 TCGA-EE-A2MC-06 10 72492039 72492039 C T ADAMTS14 Missense_Mutation p.P381S 0.20 deleterious(0.03) possibly_damaging(0.859) TCGA-EE-A2MC-06 10 73461880 73461880 C T CDH23 Silent p.I425I 0.18 TCGA-EE-A2MC-06 10 73468967 73468967 C T C10orf105 3'Flank 0.23 TCGA-EE-A2MC-06 10 73823966 73823966 G A SPOCK2 Nonsense_Mutation p.Q321* 0.15 TCGA-EE-A2MC-06 10 75289647 75289647 T C USP54 Silent p.E617E 0.13 TCGA-EE-A2MC-06 10 7786863 7786863 G A ITIH2 Missense_Mutation p.D840N 0.22 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A2MC-06 10 81372117 81372117 G A SFTPA1 Silent p.G89G 0.21 TCGA-EE-A2MC-06 10 91474907 91474907 C T KIF20B Missense_Mutation p.S303F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MC-06 10 93952255 93952255 T C CPEB3 Missense_Mutation p.M382V 0.18 tolerated_low_confidence(0.39) benign(0) TCGA-EE-A2MC-06 10 95107489 95107489 G A MYOF Silent p.I1378I 0.27 TCGA-EE-A2MC-06 10 95372614 95372614 C T PDE6C Silent p.V44V 0.16 TCGA-EE-A2MC-06 10 95848897 95848897 G A PLCE1 Intron 0.16 TCGA-EE-A2MC-06 10 96447961 96447961 G A CYP2C18 Silent p.G137G 0.14 TCGA-EE-A2MC-06 10 96609707 96609707 C T CYP2C19 Silent p.L395L 0.17 TCGA-EE-A2MC-06 10 96708900 96708900 C T CYP2C9 Silent p.F226F 0.16 TCGA-EE-A2MC-06 10 98118779 98118779 G A OPALIN 5'UTR 0.22 TCGA-EE-A2MC-06 11 101347072 101347072 C T TRPC6 Silent p.T568T 0.22 TCGA-EE-A2MC-06 11 102825186 102825186 C T MMP13 Splice_Site p.X171_splice 0.33 TCGA-EE-A2MC-06 11 116732561 116732561 G A SIK3 Nonsense_Mutation p.Q665* 0.14 TCGA-EE-A2MC-06 11 119205746 119205746 C T RNF26 5'UTR 0.22 TCGA-EE-A2MC-06 11 12270761 12270761 C T MICAL2 Missense_Mutation p.H939Y 0.19 tolerated(1) benign(0) TCGA-EE-A2MC-06 11 123989280 123989280 A G VWA5A Missense_Mutation p.I170M 0.20 tolerated(0.24) benign(0.017) TCGA-EE-A2MC-06 11 125889648 125889648 A C CDON Missense_Mutation p.F121C 0.33 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MC-06 11 1629547 1629547 G A KRTAP5-3 Silent p.G23G 0.20 TCGA-EE-A2MC-06 11 17097113 17097113 T G RPS13 Missense_Mutation p.K70T 0.15 deleterious(0.02) possibly_damaging(0.88) TCGA-EE-A2MC-06 11 2443414 2443414 C G TRPM5 Silent p.R85R 0.13 TCGA-EE-A2MC-06 11 30946906 30946906 C T DCDC1 Missense_Mutation p.E983K 0.23 deleterious(0.03) possibly_damaging(0.486) TCGA-EE-A2MC-06 11 32953685 32953685 C T QSER1 Missense_Mutation p.A165V 0.23 tolerated(0.5) benign(0.006) TCGA-EE-A2MC-06 11 35461194 35461194 G A PAMR1 Missense_Mutation p.P378S 0.17 tolerated(0.13) benign(0.168) TCGA-EE-A2MC-06 11 4511075 4511075 G A OR52K1 Silent p.%3D 0.18 TCGA-EE-A2MC-06 11 45987070 45987070 G A PHF21A Silent p.P263P 0.33 TCGA-EE-A2MC-06 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.12 TCGA-EE-A2MC-06 11 4661907 4661907 C T OR51D1 Missense_Mutation p.P296L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 11 47350616 47350616 C T MADD Missense_Mutation p.S1620F 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 11 47776089 47776089 G A FNBP4 Silent p.N147N 0.14 TCGA-EE-A2MC-06 11 4869932 4869932 G A OR51S1 Silent p.F169F 0.31 TCGA-EE-A2MC-06 11 498091 498091 A T RNH1 Missense_Mutation p.V336E 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2MC-06 11 49831565 49831565 C G RP11-707M1.1 RNA 0.31 TCGA-EE-A2MC-06 11 49974850 49974850 G A OR4C13 Missense_Mutation p.M292I 0.12 tolerated_low_confidence(0.08) benign(0.012) TCGA-EE-A2MC-06 11 5080094 5080094 G A OR52E2 Missense_Mutation p.P255L 0.14 deleterious(0) possibly_damaging(0.858) TCGA-EE-A2MC-06 11 5172693 5172693 G A OR52A1 Missense_Mutation p.R303C 0.12 deleterious(0.02) benign(0.028) TCGA-EE-A2MC-06 11 5173472 5173472 C T OR52A1 Missense_Mutation p.G43E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 11 5411114 5411114 C T OR51M1 Silent p.F162F 0.19 TCGA-EE-A2MC-06 11 55541318 55541318 C T OR5D13 Silent p.T135T 0.12 TCGA-EE-A2MC-06 11 55594874 55594874 C T OR5L2 Silent p.Y60Y 0.14 TCGA-EE-A2MC-06 11 55735289 55735289 C T OR10AG1 Silent p.L217L 0.21 TCGA-EE-A2MC-06 11 56086497 56086497 A T OR8K3 Missense_Mutation p.T239S 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MC-06 11 56113517 56113517 G A OR8K1 Translation_Start_Site p.M1? 0.30 tolerated_low_confidence(0.09) benign(0) TCGA-EE-A2MC-06 11 56128027 56128027 G A OR8J1 Missense_Mutation p.G102E 0.25 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A2MC-06 11 56345152 56345152 C T OR5M10 Missense_Mutation p.G16R 0.28 deleterious(0.02) benign(0.242) TCGA-EE-A2MC-06 11 56510651 56510651 C T OR9G4 Missense_Mutation p.V213I 0.16 tolerated(0.28) benign(0.075) TCGA-EE-A2MC-06 11 57003329 57003329 C T APLNR 3'UTR 0.12 TCGA-EE-A2MC-06 11 5776340 5776340 C T OR52N4 Missense_Mutation p.R124C 0.16 deleterious(0.01) benign(0.082) TCGA-EE-A2MC-06 11 57971493 57971493 C T OR1S2 Missense_Mutation p.G54E 0.37 deleterious(0.01) benign(0.263) TCGA-EE-A2MC-06 11 59211024 59211024 C T OR5A1 Missense_Mutation p.A128V 0.08 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MC-06 11 59626734 59626734 C T TCN1 Missense_Mutation p.G188D 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 11 60702230 60702230 C T TMEM132A Silent p.S611S 0.15 TCGA-EE-A2MC-06 11 60703807 60703807 G A TMEM132A Missense_Mutation p.E835K 0.28 tolerated(0.24) probably_damaging(0.997) TCGA-EE-A2MC-06 11 6231301 6231301 G A C11orf42 Silent p.R98R 0.17 TCGA-EE-A2MC-06 11 6239944 6239944 G A FAM160A2 Missense_Mutation p.R441C 0.19 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MC-06 11 62435109 62435109 T A C11orf48 Missense_Mutation p.T142S 0.31 tolerated_low_confidence(0.46) benign(0.01) TCGA-EE-A2MC-06 11 62760752 62760752 C T SLC22A8 Missense_Mutation p.R529K 0.25 tolerated(1) benign(0.001) TCGA-EE-A2MC-06 11 62985178 62985178 G A SLC22A25 Missense_Mutation p.S179F 0.16 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2MC-06 11 63137445 63137445 T C SLC22A9 5'UTR 0.16 TCGA-EE-A2MC-06 11 63313664 63313664 G A RARRES3 Missense_Mutation p.G144E 0.30 deleterious(0.01) benign(0.419) TCGA-EE-A2MC-06 11 64698008 64698008 C T PPP2R5B Missense_Mutation p.R280C 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MC-06 11 6472626 6472626 G A TRIM3 Nonsense_Mutation p.R526* 0.27 TCGA-EE-A2MC-06 11 64822107 64822107 G A NAALADL1 Missense_Mutation p.S236F 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MC-06 11 65714678 65714678 C T TSGA10IP RNA 0.19 TCGA-EE-A2MC-06 11 71146863 71146863 G A DHCR7 Missense_Mutation p.P329L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 11 71946430 71946430 A T INPPL1 Missense_Mutation p.N865I 0.14 tolerated(0.12) possibly_damaging(0.899) TCGA-EE-A2MC-06 11 71948480 71948480 C T INPPL1 Silent p.F1064F 0.25 TCGA-EE-A2MC-06 11 73584408 73584408 G A COA4 Missense_Mutation p.P6S 0.10 tolerated(0.16) benign(0.141) TCGA-EE-A2MC-06 11 92430568 92430568 C T FAT3 Missense_Mutation p.S1209L 0.26 probably_damaging(0.963) TCGA-EE-A2MC-06 11 95712580 95712580 T C MAML2 Silent p.Q1001Q 0.20 TCGA-EE-A2MC-06 12 102041880 102041880 G C MYBPC1 Missense_Mutation p.R358T 0.18 deleterious(0.04) benign(0.042) TCGA-EE-A2MC-06 12 106740246 106740246 C T TCP11L2 Nonsense_Mutation p.R500* 0.23 TCGA-EE-A2MC-06 12 109017969 109017969 C T SELPLG Missense_Mutation p.D55N 0.17 tolerated(0.48) unknown(0) TCGA-EE-A2MC-06 12 112607316 112607316 G A HECTD4 Missense_Mutation p.H3921Y 0.21 probably_damaging(0.961) TCGA-EE-A2MC-06 12 112699194 112699194 G A HECTD4 Silent p.L784L 0.24 TCGA-EE-A2MC-06 12 122337655 122337655 C A PSMD9 Silent p.A119A 0.19 TCGA-EE-A2MC-06 12 122622109 122622109 C T MLXIP Missense_Mutation p.S709F 0.14 tolerated(0.06) benign(0.107) TCGA-EE-A2MC-06 12 125298774 125298774 T C SCARB1 Missense_Mutation p.K202E 0.15 tolerated(0.11) possibly_damaging(0.46) TCGA-EE-A2MC-06 12 130926716 130926716 G A RIMBP2 Missense_Mutation p.S377L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 12 132323164 132323164 C T MMP17 Silent p.A100A 0.18 TCGA-EE-A2MC-06 12 133779296 133779296 A C ZNF268 Missense_Mutation p.S342R 0.22 tolerated(0.31) benign(0.001) TCGA-EE-A2MC-06 12 14923804 14923804 G A HIST4H4 Missense_Mutation p.T72I 0.16 deleterious(0.04) possibly_damaging(0.449) TCGA-EE-A2MC-06 12 21329826 21329826 G A SLCO1B1 Missense_Mutation p.G159E 0.14 tolerated(1) benign(0.006) TCGA-EE-A2MC-06 12 21349913 21349913 G A SLCO1B1 Nonsense_Mutation p.W254* 0.17 TCGA-EE-A2MC-06 12 23893968 23893968 G A SOX5 Missense_Mutation p.P192S 0.12 deleterious(0.04) benign(0.021) TCGA-EE-A2MC-06 12 247543 247543 C T IQSEC3 Silent p.I338I 0.12 TCGA-EE-A2MC-06 12 25267700 25267700 C T CASC1 Missense_Mutation p.D501N 0.16 deleterious(0.02) possibly_damaging(0.854) TCGA-EE-A2MC-06 12 274620 274620 G A IQSEC3 Silent p.K910K 0.21 TCGA-EE-A2MC-06 12 33532766 33532766 C A SYT10 Splice_Site p.X500_splice 0.22 TCGA-EE-A2MC-06 12 3805956 3805956 G A EFCAB4B Silent p.I70I 0.12 TCGA-EE-A2MC-06 12 44176257 44176257 A G IRAK4 Silent p.E363E 0.09 TCGA-EE-A2MC-06 12 46230613 46230613 C T ARID2 Nonsense_Mutation p.Q288* 0.19 TCGA-EE-A2MC-06 12 48369372 48369372 G A COL2A1 Missense_Mutation p.P1205L 0.10 unknown(0) TCGA-EE-A2MC-06 12 48880471 48880471 G A C12orf54 Missense_Mutation p.E33K 0.17 tolerated(0.12) possibly_damaging(0.801) TCGA-EE-A2MC-06 12 49312592 49312592 G A CCDC65 Missense_Mutation p.R311K 0.12 deleterious(0.04) benign(0.005) TCGA-EE-A2MC-06 12 50232712 50232712 G A BCDIN3D Silent p.L107L 0.19 TCGA-EE-A2MC-06 12 52887026 52887026 G T KRT6A 5'UTR 0.23 TCGA-EE-A2MC-06 12 52908675 52908675 C T KRT5 3'UTR 0.14 TCGA-EE-A2MC-06 12 53517624 53517624 G A SOAT2 Silent p.E495E 0.19 TCGA-EE-A2MC-06 12 54118921 54118921 G A CALCOCO1 Missense_Mutation p.L36F 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MC-06 12 54427123 54427123 C T HOXC5 Missense_Mutation p.R73C 0.21 tolerated(0.05) possibly_damaging(0.801) TCGA-EE-A2MC-06 12 54926004 54926004 G A NCKAP1L Silent p.K944K 0.12 TCGA-EE-A2MC-06 12 55420919 55420919 G A NEUROD4 Silent p.L232L 0.16 TCGA-EE-A2MC-06 12 55725574 55725574 C T OR6C3 Silent p.I30I 0.15 TCGA-EE-A2MC-06 12 55794670 55794670 C T OR6C65 Missense_Mutation p.R120C 0.21 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A2MC-06 12 56090778 56090778 G A ITGA7 Missense_Mutation p.R552C 0.17 deleterious(0) probably_damaging(0.919) TCGA-EE-A2MC-06 12 57570936 57570936 C T LRP1 Silent p.I1368I 0.14 TCGA-EE-A2MC-06 12 6426484 6426484 C T PLEKHG6 Missense_Mutation p.H258Y 0.14 deleterious(0.03) benign(0.003) TCGA-EE-A2MC-06 12 6428094 6428094 G A PLEKHG6 Intron 0.26 TCGA-EE-A2MC-06 12 64521666 64521666 C T SRGAP1 Missense_Mutation p.P856S 0.18 tolerated(0.32) benign(0.017) TCGA-EE-A2MC-06 12 64746779 64746779 G A C12orf56 Missense_Mutation p.R104C 0.25 tolerated(0.28) probably_damaging(0.977) TCGA-EE-A2MC-06 12 73046155 73046155 A C TRHDE Missense_Mutation p.D865A 0.11 deleterious(0.01) possibly_damaging(0.469) TCGA-EE-A2MC-06 12 7639179 7639179 C T CD163 Missense_Mutation p.E792K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 12 7842389 7842389 C T GDF3 3'UTR 0.26 TCGA-EE-A2MC-06 12 88900815 88900815 A G KITLG Missense_Mutation p.L235S 0.20 deleterious(0) probably_damaging(0.912) TCGA-EE-A2MC-06 12 9004870 9004870 C T A2ML1 Missense_Mutation p.S843F 0.19 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MC-06 12 9264767 9264767 G A A2M Silent p.P157P 0.10 TCGA-EE-A2MC-06 12 95603226 95603226 C T FGD6 Missense_Mutation p.E612K 0.18 deleterious(0.02) benign(0.275) TCGA-EE-A2MC-06 12 97043723 97043723 C T C12orf55 Missense_Mutation p.S1582F 0.12 deleterious(0) benign(0.02) TCGA-EE-A2MC-06 12 97133744 97133744 G A C12orf55 Missense_Mutation p.V2326I 0.11 tolerated(0.09) benign(0.001) TCGA-EE-A2MC-06 13 109859073 109859073 T C MYO16 Silent p.A1822A 0.20 TCGA-EE-A2MC-06 13 113909009 113909009 G T CUL4A Silent p.G585G 0.12 TCGA-EE-A2MC-06 13 113909011 113909011 A G CUL4A Missense_Mutation p.K586R 0.12 tolerated(0.32) benign(0.023) TCGA-EE-A2MC-06 13 19748188 19748188 G A TUBA3C Missense_Mutation p.R390C 0.17 deleterious_low_confidence(0.01) benign(0.042) TCGA-EE-A2MC-06 13 25370412 25370412 C T RNF17 Missense_Mutation p.P460S 0.20 tolerated(0.05) probably_damaging(0.992) TCGA-EE-A2MC-06 13 28893576 28893576 C T FLT1 Nonsense_Mutation p.W1090* 0.14 TCGA-EE-A2MC-06 13 36124729 36124729 G A NBEA Missense_Mutation p.R2234Q 0.14 deleterious(0) benign(0.122) TCGA-EE-A2MC-06 13 38153461 38153461 G A POSTN Missense_Mutation p.H566Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 13 43180898 43180898 G A TNFSF11 Silent p.G266G 0.14 TCGA-EE-A2MC-06 13 43930157 43930157 G A ENOX1 Missense_Mutation p.H241Y 0.18 deleterious(0) possibly_damaging(0.65) TCGA-EE-A2MC-06 13 48830478 48830478 G A ITM2B Missense_Mutation p.A138T 0.15 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A2MC-06 13 53049131 53049131 C T CKAP2 Missense_Mutation p.S636F 0.18 tolerated(0.36) benign(0.345) TCGA-EE-A2MC-06 13 70293705 70293705 G A KLHL1 Missense_Mutation p.S604L 0.15 deleterious(0) benign(0.166) TCGA-EE-A2MC-06 13 72255957 72255957 G A DACH1 Missense_Mutation p.L314F 0.21 probably_damaging(0.999) TCGA-EE-A2MC-06 13 79191042 79191042 C T RNF219 Missense_Mutation p.S285N 0.12 tolerated(0.06) benign(0.004) TCGA-EE-A2MC-06 13 86368845 86368845 G A SLITRK6 Missense_Mutation p.S600F 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 13 97639629 97639629 T G OXGR1 Missense_Mutation p.I129L 0.25 tolerated(0.11) benign(0.026) TCGA-EE-A2MC-06 14 102359354 102359354 C T PPP2R5C Missense_Mutation p.A267V 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2MC-06 14 105411484 105411484 G A AHNAK2 Missense_Mutation p.S3435F 0.22 benign(0.277) TCGA-EE-A2MC-06 14 21550559 21550559 C T ARHGEF40 Silent p.F1136F 0.09 TCGA-EE-A2MC-06 14 21960465 21960465 G A TOX4 Missense_Mutation p.R274K 0.23 tolerated(0.19) probably_damaging(0.979) TCGA-EE-A2MC-06 14 22180939 22180939 C T TRAV2 Missense_Mutation p.L71F 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2MC-06 14 22180973 22180973 G A TRAV2 Missense_Mutation p.R82Q 0.20 tolerated(0.29) possibly_damaging(0.863) TCGA-EE-A2MC-06 14 22392629 22392629 G A TRAV14DV4 Missense_Mutation p.S51N 0.18 TCGA-EE-A2MC-06 14 22392630 22392630 T A TRAV14DV4 Missense_Mutation p.S51R 0.18 TCGA-EE-A2MC-06 14 22600937 22600937 G A TRAV8-7 Silent p.R94R 0.22 TCGA-EE-A2MC-06 14 23078744 23078744 C T ABHD4 Silent p.S289S 0.26 TCGA-EE-A2MC-06 14 23888698 23888698 C T MYH7 Missense_Mutation p.E1283K 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MC-06 14 24534935 24534935 T C LRRC16B Silent p.G1167G 0.20 TCGA-EE-A2MC-06 14 26917661 26917661 C T NOVA1 Missense_Mutation p.G343E 0.25 deleterious(0.01) benign(0.044) TCGA-EE-A2MC-06 14 36988476 36988476 C T NKX2-1 Missense_Mutation p.M59I 0.19 tolerated(0.09) probably_damaging(0.946) TCGA-EE-A2MC-06 14 50089057 50089057 T C MGAT2 Silent p.C357C 0.16 TCGA-EE-A2MC-06 14 55902631 55902631 G A TBPL2 Silent p.N210N 0.12 TCGA-EE-A2MC-06 14 58955384 58955384 C T KIAA0586 Silent p.F1244F 0.25 TCGA-EE-A2MC-06 14 60921816 60921816 G A C14orf39 Missense_Mutation p.S469F 0.14 deleterious(0) probably_damaging(0.919) TCGA-EE-A2MC-06 14 65260425 65260425 C T SPTB Nonsense_Mutation p.W652* 0.16 TCGA-EE-A2MC-06 14 68060610 68060610 G A PIGH Silent p.L80L 0.22 TCGA-EE-A2MC-06 14 70635054 70635054 C T SLC8A3 Missense_Mutation p.R29Q 0.21 tolerated_low_confidence(0.6) benign(0.001) TCGA-EE-A2MC-06 14 70635068 70635068 G A SLC8A3 Silent p.F24F 0.24 TCGA-EE-A2MC-06 14 72190579 72190579 C T SIPA1L1 Missense_Mutation p.S1496F 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A2MC-06 14 79270138 79270138 G A NRXN3 Silent p.G367G 0.09 TCGA-EE-A2MC-06 14 79270139 79270139 G A NRXN3 Missense_Mutation p.G368R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 14 81382795 81382795 G A CEP128 Missense_Mutation p.P33S 0.24 tolerated(0.35) benign(0.039) TCGA-EE-A2MC-06 14 94041415 94041415 G A UNC79 Silent p.E517E 0.23 TCGA-EE-A2MC-06 14 94044256 94044256 C T UNC79 Silent p.F583F 0.21 TCGA-EE-A2MC-06 14 95088707 95088707 T A SERPINA3 Missense_Mutation p.F316Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 14 95569702 95569702 G A DICER1 Missense_Mutation p.S1344L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 15 28492019 28492019 G A HERC2 Missense_Mutation p.S1087F 0.14 possibly_damaging(0.862) TCGA-EE-A2MC-06 15 32935926 32935926 C T SCG5 Missense_Mutation p.H45Y 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MC-06 15 34610759 34610759 C A SLC12A6 Intron 0.14 TCGA-EE-A2MC-06 15 37390313 37390313 G A MEIS2 Missense_Mutation p.P34S 0.15 tolerated(0.05) benign(0.011) TCGA-EE-A2MC-06 15 42147567 42147567 C T SPTBN5 Missense_Mutation p.R3093K 0.13 benign(0.046) TCGA-EE-A2MC-06 15 43817097 43817097 C T MAP1A Silent p.D1142D 0.10 TCGA-EE-A2MC-06 15 45398382 45398382 G A DUOX2 Silent p.L697L 0.21 TCGA-EE-A2MC-06 15 51696536 51696536 G A GLDN Missense_Mutation p.R414Q 0.13 tolerated(0.1) probably_damaging(0.995) TCGA-EE-A2MC-06 15 54307828 54307828 T A UNC13C Missense_Mutation p.Y910N 0.18 tolerated_low_confidence(0.09) benign(0.111) TCGA-EE-A2MC-06 15 58256196 58256196 G A ALDH1A2 Missense_Mutation p.R325C 0.24 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MC-06 15 58855829 58855829 C G LIPC Missense_Mutation p.T432R 0.12 tolerated(0.63) benign(0.261) TCGA-EE-A2MC-06 15 62209763 62209763 C T VPS13C Nonsense_Mutation p.W2611* 0.15 TCGA-EE-A2MC-06 15 66633495 66633495 T A TIPIN Silent p.L225L 0.18 TCGA-EE-A2MC-06 15 66790148 66790148 G A SNAPC5 5'UTR 0.40 TCGA-EE-A2MC-06 15 74708937 74708937 G A SEMA7A Silent p.S260S 0.14 TCGA-EE-A2MC-06 15 77348180 77348180 A T TSPAN3 Missense_Mutation p.F94Y 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MC-06 15 83561540 83561540 G A HOMER2 Missense_Mutation p.T20I 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 15 90800928 90800928 C T TTLL13 Silent p.V303V 0.22 TCGA-EE-A2MC-06 15 95020022 95020022 G A MCTP2 Silent p.K856K 0.13 TCGA-EE-A2MC-06 16 11792183 11792183 T A TXNDC11 Splice_Site p.X303_splice 0.23 TCGA-EE-A2MC-06 16 1272296 1272304 ACGGAGACT - TPSG1 In_Frame_Del p.S185_V187del 0.18 TCGA-EE-A2MC-06 16 15166834 15166834 G A RRN3 Silent p.F367F 0.17 TCGA-EE-A2MC-06 16 15225227 15225227 G A RP11-1186N24.5 RNA 0.10 TCGA-EE-A2MC-06 16 17235063 17235063 C T XYLT1 Missense_Mutation p.D512N 0.14 tolerated(0.1) benign(0.166) TCGA-EE-A2MC-06 16 21709189 21709189 C T OTOA Missense_Mutation p.P278L 0.19 tolerated(0.72) benign(0.024) TCGA-EE-A2MC-06 16 2223538 2223538 G T TRAF7 Missense_Mutation p.D357Y 0.20 deleterious(0.01) benign(0.423) TCGA-EE-A2MC-06 16 24373110 24373110 C T CACNG3 Missense_Mutation p.H292Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 16 2812052 2812052 C T SRRM2 Missense_Mutation p.S508F 0.11 unknown(0) TCGA-EE-A2MC-06 16 28508738 28508738 G A APOBR Silent p.S792S 0.20 TCGA-EE-A2MC-06 16 2881912 2881912 C T ZG16B Nonsense_Mutation p.Q127* 0.19 TCGA-EE-A2MC-06 16 3097439 3097439 C T MMP25 Silent p.Y41Y 0.20 TCGA-EE-A2MC-06 16 31419746 31419746 G A ITGAD Missense_Mutation p.G337E 0.12 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MC-06 16 47117523 47117523 G A NETO2 Missense_Mutation p.P396L 0.20 deleterious(0.04) benign(0.177) TCGA-EE-A2MC-06 16 50335009 50335009 G A ADCY7 Missense_Mutation p.E418K 0.27 deleterious(0.05) probably_damaging(0.995) TCGA-EE-A2MC-06 16 51171346 51171346 G A SALL1 Nonsense_Mutation p.Q1218* 0.30 TCGA-EE-A2MC-06 16 51174572 51174572 G A SALL1 Missense_Mutation p.P521S 0.09 deleterious(0) benign(0.103) TCGA-EE-A2MC-06 16 53283919 53283919 A T CHD9 Missense_Mutation p.T1268S 0.18 probably_damaging(0.999) TCGA-EE-A2MC-06 16 57056215 57056215 C T NLRC5 Nonsense_Mutation p.Q115* 0.15 TCGA-EE-A2MC-06 16 57718373 57718373 G A GPR97 Missense_Mutation p.E412K 0.23 tolerated(0.33) benign(0.038) TCGA-EE-A2MC-06 16 57778395 57778395 C T KATNB1 Silent p.I87I 0.10 TCGA-EE-A2MC-06 16 66413219 66413219 C T CDH5 Intron 0.23 TCGA-EE-A2MC-06 16 67914531 67914531 C T EDC4 Silent p.S723S 0.18 TCGA-EE-A2MC-06 16 71212863 71212863 C T HYDIN Missense_Mutation p.E117K 0.20 probably_damaging(0.916) TCGA-EE-A2MC-06 16 72157519 72157519 G A PMFBP1 Silent p.P873P 0.27 TCGA-EE-A2MC-06 16 7382911 7382911 T C RBFOX1 5'UTR 0.24 TCGA-EE-A2MC-06 16 74729605 74729605 C T MLKL Silent p.R17R 0.12 TCGA-EE-A2MC-06 16 7703888 7703888 C T RBFOX1 Missense_Mutation p.R297C 0.18 deleterious(0) possibly_damaging(0.78) TCGA-EE-A2MC-06 16 81077221 81077221 A G ATMIN Missense_Mutation p.N373S 0.10 tolerated(0.76) benign(0.007) TCGA-EE-A2MC-06 16 81157334 81157334 A C PKD1L2 RNA 0.13 TCGA-EE-A2MC-06 16 82032704 82032704 C T SDR42E1 3'UTR 0.24 TCGA-EE-A2MC-06 17 10233820 10233820 G A MYH13 Silent p.L773L 0.38 TCGA-EE-A2MC-06 17 10309525 10309525 C T MYH8 Intron 0.09 TCGA-EE-A2MC-06 17 10428919 10428919 C T MYH2 Nonsense_Mutation p.W1462* 0.19 TCGA-EE-A2MC-06 17 10451105 10451105 C T MYH2 Missense_Mutation p.E45K 0.19 tolerated(0.07) benign(0.201) TCGA-EE-A2MC-06 17 11642272 11642272 C T DNAH9 Missense_Mutation p.P1964S 0.18 possibly_damaging(0.512) TCGA-EE-A2MC-06 17 11984723 11984723 C T MAP2K4 Missense_Mutation p.S90F 0.21 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A2MC-06 17 12626207 12626207 G A MYOCD Silent p.L99L 0.20 TCGA-EE-A2MC-06 17 12655755 12655755 C T MYOCD Nonsense_Mutation p.R384* 0.10 TCGA-EE-A2MC-06 17 1631593 1631593 A G WDR81 Missense_Mutation p.T1114A 0.15 tolerated(0.84) benign(0.002) TCGA-EE-A2MC-06 17 17698654 17698654 C T RAI1 Missense_Mutation p.P798S 0.26 tolerated(0.05) benign(0.004) TCGA-EE-A2MC-06 17 27308743 27308743 G A SEZ6 Missense_Mutation p.P124S 0.14 tolerated(0.11) possibly_damaging(0.715) TCGA-EE-A2MC-06 17 29171041 29171041 C T ATAD5 Silent p.S784S 0.14 TCGA-EE-A2MC-06 17 29283298 29283298 G T ADAP2 Nonsense_Mutation p.E308* 0.22 TCGA-EE-A2MC-06 17 36483959 36483959 C T GPR179 Silent p.L1831L 0.16 TCGA-EE-A2MC-06 17 37187597 37187597 C T CTD-2206N4.2 5'Flank 0.18 TCGA-EE-A2MC-06 17 38975971 38975971 C T KRT10 Missense_Mutation p.A391T 0.12 tolerated(0.1) probably_damaging(0.91) TCGA-EE-A2MC-06 17 39118439 39118439 A G KRT39 Missense_Mutation p.V324A 0.13 deleterious(0) benign(0.335) TCGA-EE-A2MC-06 17 39535215 39535215 C T KRT34 Missense_Mutation p.D406N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 17 39635247 39635247 C T KRT35 Missense_Mutation p.E238K 0.13 deleterious(0) possibly_damaging(0.537) TCGA-EE-A2MC-06 17 39724523 39724523 C T KRT9 Missense_Mutation p.E429K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MC-06 17 39767380 39767380 G A KRT16 Nonsense_Mutation p.Q292* 0.26 TCGA-EE-A2MC-06 17 39883689 39883689 G A HAP1 Intron 0.12 TCGA-EE-A2MC-06 17 41477377 41477377 C T ARL4D Missense_Mutation p.R93W 0.15 deleterious(0.02) possibly_damaging(0.765) TCGA-EE-A2MC-06 17 41926310 41926310 G A CD300LG Intron 0.18 TCGA-EE-A2MC-06 17 43009545 43009545 C T KIF18B Missense_Mutation p.G423E 0.21 tolerated(0.48) benign(0.016) TCGA-EE-A2MC-06 17 45901815 45901815 A G MRPL10 Missense_Mutation p.I191T 0.11 deleterious(0) benign(0.367) TCGA-EE-A2MC-06 17 48141897 48141897 C A ITGA3 Missense_Mutation p.P114T 0.21 tolerated(0.14) probably_damaging(0.946) TCGA-EE-A2MC-06 17 4936832 4936832 C T SLC52A1 Missense_Mutation p.V318M 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 17 50212243 50212243 C T CA10 Intron 0.10 TCGA-EE-A2MC-06 17 54939586 54939586 C T DGKE Nonsense_Mutation p.R500* 0.33 TCGA-EE-A2MC-06 17 56232981 56232981 C T OR4D1 Missense_Mutation p.S156F 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MC-06 17 56272400 56272400 T C EPX Missense_Mutation p.F224L 0.12 tolerated(0.14) possibly_damaging(0.656) TCGA-EE-A2MC-06 17 56386569 56386569 C T BZRAP1 Missense_Mutation p.R1355Q 0.14 tolerated(0.77) benign(0.001) TCGA-EE-A2MC-06 17 58284461 58284461 G A USP32 Silent p.L986L 0.25 TCGA-EE-A2MC-06 17 58511487 58511487 G A C17orf64 3'Flank 0.38 TCGA-EE-A2MC-06 17 60345071 60345071 C T TBC1D3P2 RNA 0.19 TCGA-EE-A2MC-06 17 65027082 65027082 C T CACNG4 Missense_Mutation p.H316Y 0.25 deleterious(0.05) possibly_damaging(0.616) TCGA-EE-A2MC-06 17 7318850 7318850 C T NLGN2 Missense_Mutation p.P353L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 17 7365133 7365133 G A ZBTB4 3'UTR 0.28 TCGA-EE-A2MC-06 17 73732427 73732427 C T ITGB4 Missense_Mutation p.S607L 0.16 deleterious(0.04) benign(0.273) TCGA-EE-A2MC-06 17 7415630 7415630 C T POLR2A Missense_Mutation p.P1487S 0.19 benign(0.067) TCGA-EE-A2MC-06 17 74288612 74288612 T C QRICH2 Silent p.Q566Q 0.17 TCGA-EE-A2MC-06 17 78165120 78165120 A C CARD14 Splice_Site p.X364_splice 0.11 TCGA-EE-A2MC-06 17 7942489 7942489 G A ALOX15B Missense_Mutation p.V6I 0.15 deleterious(0.05) benign(0.12) TCGA-EE-A2MC-06 17 8347657 8347657 C T NDEL1 Missense_Mutation p.S23F 0.22 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MC-06 17 8647889 8647889 C T CCDC42 Silent p.E13E 0.14 TCGA-EE-A2MC-06 18 28602306 28602306 C T DSC3 Missense_Mutation p.R313K 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 18 28611119 28611119 G A DSC3 Silent p.F58F 0.29 TCGA-EE-A2MC-06 18 28671044 28671044 G A DSC2 Missense_Mutation p.P141S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 18 28956860 28956860 G A DSG4 5'UTR 0.25 TCGA-EE-A2MC-06 18 29046576 29046576 A G DSG3 Missense_Mutation p.K499E 0.19 tolerated(0.7) benign(0.025) TCGA-EE-A2MC-06 18 29046577 29046577 A C DSG3 Missense_Mutation p.K499T 0.19 tolerated(0.41) possibly_damaging(0.698) TCGA-EE-A2MC-06 18 29793248 29793248 G A MEP1B Silent p.R435R 0.18 TCGA-EE-A2MC-06 18 31320151 31320151 G A ASXL3 Missense_Mutation p.G928E 0.22 possibly_damaging(0.548) TCGA-EE-A2MC-06 18 42530559 42530559 G A SETBP1 Silent p.R418R 0.24 TCGA-EE-A2MC-06 18 46190191 46190191 C T CTIF Silent p.S107S 0.22 TCGA-EE-A2MC-06 18 47527697 47527697 G A MYO5B Silent p.F180F 0.17 TCGA-EE-A2MC-06 18 47563340 47563340 G A MYO5B Missense_Mutation p.P112L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 18 48327733 48327733 G A MRO Missense_Mutation p.P205S 0.14 deleterious(0.02) possibly_damaging(0.517) TCGA-EE-A2MC-06 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.24 TCGA-EE-A2MC-06 18 5395607 5395607 C - EPB41L3 Splice_Site p.X1024_splice 0.16 TCGA-EE-A2MC-06 18 56184167 56184167 G A ALPK2 Silent p.I1971I 0.16 TCGA-EE-A2MC-06 18 56390422 56390422 T G MALT1 Silent p.T387T 0.13 TCGA-EE-A2MC-06 18 61071055 61071055 G A VPS4B Silent p.A123A 0.17 TCGA-EE-A2MC-06 18 61310397 61310397 G A SERPINB4 Missense_Mutation p.H74Y 0.17 deleterious(0.02) possibly_damaging(0.811) TCGA-EE-A2MC-06 18 61449734 61449734 G A SERPINB7 Missense_Mutation p.R43H 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-EE-A2MC-06 18 66678318 66678318 G A CCDC102B Missense_Mutation p.G471R 0.11 tolerated(0.83) benign(0.021) TCGA-EE-A2MC-06 18 67671411 67671411 G A RTTN Silent p.L2219L 0.16 TCGA-EE-A2MC-06 18 6882258 6882258 C T ARHGAP28 Silent p.F312F 0.19 TCGA-EE-A2MC-06 18 9859235 9859235 C T RAB31 Silent p.I167I 0.11 TCGA-EE-A2MC-06 19 10112552 10112552 G - COL5A3 Frame_Shift_Del p.T286Lfs*26 0.12 TCGA-EE-A2MC-06 19 10169529 10169529 G A C3P1 RNA 0.17 TCGA-EE-A2MC-06 19 11832642 11832642 G A ZNF823 Silent p.F569F 0.16 TCGA-EE-A2MC-06 19 12061404 12061404 A G ZNF700 3'UTR 0.33 TCGA-EE-A2MC-06 19 12155515 12155515 T A ZNF878 Missense_Mutation p.K234I 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 19 13065339 13065339 C T GADD45GIP1 Missense_Mutation p.E118K 0.21 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MC-06 19 14028885 14028885 C T CC2D1A Missense_Mutation p.P251S 0.10 tolerated(0.3) benign(0.043) TCGA-EE-A2MC-06 19 16268269 16268269 G A HSH2D 3'Flank 0.26 TCGA-EE-A2MC-06 19 16902353 16902353 G A NWD1 Missense_Mutation p.E1045K 0.12 tolerated(0.08) possibly_damaging(0.46) TCGA-EE-A2MC-06 19 17444280 17444280 G A ANO8 Missense_Mutation p.H101Y 0.14 deleterious(0.03) possibly_damaging(0.566) TCGA-EE-A2MC-06 19 18649187 18649187 G A FKBP8 Missense_Mutation p.A204V 0.12 tolerated(0.73) benign(0.116) TCGA-EE-A2MC-06 19 19042209 19042209 G C HOMER3 Silent p.T273T 0.16 TCGA-EE-A2MC-06 19 19752645 19752645 G A GMIP Missense_Mutation p.S71F 0.11 tolerated(0.08) benign(0.003) TCGA-EE-A2MC-06 19 19766131 19766131 T A ATP13A1 Nonsense_Mutation p.K510* 0.16 TCGA-EE-A2MC-06 19 22363644 22363644 G A ZNF676 Missense_Mutation p.S292L 0.19 tolerated(0.69) benign(0.036) TCGA-EE-A2MC-06 19 22939060 22939060 G A ZNF99 3'Flank 0.15 TCGA-EE-A2MC-06 19 3013779 3013779 G A TLE2 Missense_Mutation p.P254L 0.12 deleterious(0.02) possibly_damaging(0.545) TCGA-EE-A2MC-06 19 34791328 34791328 G A KIAA0355 5'UTR 0.12 TCGA-EE-A2MC-06 19 34791492 34791492 C T KIAA0355 Silent p.G38G 0.12 TCGA-EE-A2MC-06 19 3542858 3542859 - G MFSD12 Frame_Shift_Ins p.L513Pfs*16 0.23 TCGA-EE-A2MC-06 19 35657309 35657309 T C FXYD5 Intron 0.12 TCGA-EE-A2MC-06 19 36044004 36044004 C T ATP4A Missense_Mutation p.G896R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 19 36227864 36227864 G A KMT2B Missense_Mutation p.R2450Q 0.27 possibly_damaging(0.74) TCGA-EE-A2MC-06 19 38939119 38939119 A G RYR1 Missense_Mutation p.K309E 0.20 possibly_damaging(0.722) TCGA-EE-A2MC-06 19 38985093 38985093 C T RYR1 Missense_Mutation p.R2126W 0.16 benign(0.317) TCGA-EE-A2MC-06 19 40362950 40362950 C T FCGBP Silent p.E5040E 0.11 TCGA-EE-A2MC-06 19 41893466 41893466 G A EXOSC5 Missense_Mutation p.R190W 0.35 tolerated(0.08) benign(0.014) TCGA-EE-A2MC-06 19 42133335 42133335 C T CEACAM4 5'UTR 0.18 TCGA-EE-A2MC-06 19 42351549 42351549 C T DMRTC2 Missense_Mutation p.P18L 0.15 tolerated(0.11) benign(0.002) TCGA-EE-A2MC-06 19 42489163 42489163 G A ATP1A3 Silent p.S313S 0.16 TCGA-EE-A2MC-06 19 42599534 42599534 G A POU2F2 Silent p.F345F 0.18 TCGA-EE-A2MC-06 19 43234162 43234162 C T PSG3 Silent p.R252R 0.16 TCGA-EE-A2MC-06 19 43371254 43371254 G A PSG1 3'Flank 0.15 TCGA-EE-A2MC-06 19 43372934 43372934 C T PSG1 Missense_Mutation p.S321N 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A2MC-06 19 43411093 43411093 G A PSG6 Silent p.S407S 0.24 TCGA-EE-A2MC-06 19 44471067 44471067 C T ZNF221 Silent p.V471V 0.15 TCGA-EE-A2MC-06 19 46095136 46095136 C T GPR4 5'UTR 0.10 TCGA-EE-A2MC-06 19 46195203 46195203 G A SNRPD2 5'UTR 0.30 TCGA-EE-A2MC-06 19 4817259 4817259 G A TICAM1 Silent p.T377T 0.17 TCGA-EE-A2MC-06 19 48183957 48183957 C T GLTSCR1 Silent p.I510I 0.24 TCGA-EE-A2MC-06 19 49104458 49104458 A T FAM83E Missense_Mutation p.F449I 0.19 tolerated_low_confidence(0.08) benign(0.002) TCGA-EE-A2MC-06 19 49536270 49536270 A G CGB2 Missense_Mutation p.N95S 0.21 deleterious(0) benign(0.224) TCGA-EE-A2MC-06 19 50156263 50156263 C T SCAF1 Missense_Mutation p.R873C 0.14 unknown(0) TCGA-EE-A2MC-06 19 50549329 50549330 - T ZNF473 Frame_Shift_Ins p.V546Cfs*18 0.13 TCGA-EE-A2MC-06 19 50796837 50796837 G A MYH14 Missense_Mutation p.E1788K 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2MC-06 19 50905548 50905548 C T POLD1 Missense_Mutation p.L226F 0.20 tolerated(0.08) possibly_damaging(0.831) TCGA-EE-A2MC-06 19 51140553 51140553 C T SYT3 Missense_Mutation p.R39Q 0.19 tolerated(0.31) benign(0.022) TCGA-EE-A2MC-06 19 51957508 51957508 C T SIGLEC8 Missense_Mutation p.E404K 0.14 tolerated(0.24) benign(0.006) TCGA-EE-A2MC-06 19 51986565 51986565 C T CEACAM18 Missense_Mutation p.P384L 0.16 tolerated_low_confidence(0.06) benign(0.255) TCGA-EE-A2MC-06 19 52131315 52131315 G A SIGLEC5 Missense_Mutation p.L257F 0.17 tolerated(0.05) possibly_damaging(0.464) TCGA-EE-A2MC-06 19 52569737 52569737 G A ZNF841 Silent p.F466F 0.29 TCGA-EE-A2MC-06 19 53057071 53057071 C T ZNF808 Missense_Mutation p.S301F 0.16 tolerated(0.68) possibly_damaging(0.879) TCGA-EE-A2MC-06 19 535879 535879 G A CDC34 Missense_Mutation p.A74T 0.22 tolerated(1) benign(0.002) TCGA-EE-A2MC-06 19 53793219 53793219 G A BIRC8 Nonsense_Mutation p.Q137* 0.13 TCGA-EE-A2MC-06 19 54212017 54212017 G A MIR518C RNA 0.16 TCGA-EE-A2MC-06 19 54212018 54212018 G A MIR518C RNA 0.17 TCGA-EE-A2MC-06 19 5455937 5455937 C T ZNRF4 Silent p.I145I 0.21 TCGA-EE-A2MC-06 19 5456284 5456284 C T ZNRF4 Missense_Mutation p.T261I 0.16 tolerated(0.47) benign(0.013) TCGA-EE-A2MC-06 19 54818603 54818603 G A LILRA5 3'UTR 0.24 TCGA-EE-A2MC-06 19 54823417 54823417 C T LILRA5 Silent p.G42G 0.14 TCGA-EE-A2MC-06 19 55145134 55145134 C A LILRB1 Missense_Mutation p.T436K 0.18 tolerated(0.12) benign(0.015) TCGA-EE-A2MC-06 19 55363708 55363708 C T KIR3DL2 Missense_Mutation p.P109L 0.19 tolerated(0.84) benign(0.05) TCGA-EE-A2MC-06 19 55396759 55396759 G A FCAR Missense_Mutation p.M61I 0.18 tolerated(0.41) benign(0.093) TCGA-EE-A2MC-06 19 55450616 55450616 C T NLRP7 Missense_Mutation p.G524D 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 19 55489158 55489158 G A NLRP2 Missense_Mutation p.E122K 0.27 tolerated(0.13) benign(0.238) TCGA-EE-A2MC-06 19 57326320 57326320 C T PEG3 Missense_Mutation p.E1164K 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2MC-06 19 58921369 58921369 C T ZNF584 Missense_Mutation p.S27F 0.25 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MC-06 19 8922646 8922646 G A ZNF558 Missense_Mutation p.H174Y 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MC-06 19 8996444 8996444 G A MUC16 Missense_Mutation p.H13710Y 0.22 possibly_damaging(0.552) TCGA-EE-A2MC-06 19 9010677 9010677 C T MUC16 Missense_Mutation p.G12995E 0.15 benign(0.287) TCGA-EE-A2MC-06 19 9058282 9058282 C T MUC16 Missense_Mutation p.E9722K 0.15 unknown(0) TCGA-EE-A2MC-06 19 9060313 9060313 C T MUC16 Missense_Mutation p.G9045R 0.09 unknown(0) TCGA-EE-A2MC-06 19 9065879 9065879 G A MUC16 Silent p.P7189P 0.21 TCGA-EE-A2MC-06 19 9082421 9082421 C T MUC16 Missense_Mutation p.E3132K 0.23 unknown(0) TCGA-EE-A2MC-06 19 9082689 9082689 G A MUC16 Silent p.F3042F 0.27 TCGA-EE-A2MC-06 1 100316674 100316674 G A AGL Missense_Mutation p.E26K 0.18 tolerated(0.53) benign(0.01) TCGA-EE-A2MC-06 1 10342482 10342482 C T KIF1B Missense_Mutation p.S396F 0.16 tolerated(0.08) probably_damaging(0.934) TCGA-EE-A2MC-06 1 10708004 10708004 G A CASZ1 Silent p.L1117L 0.19 TCGA-EE-A2MC-06 1 109650610 109650610 C T C1orf194 Nonsense_Mutation p.W32* 0.18 TCGA-EE-A2MC-06 1 109795360 109795360 T C CELSR2 Missense_Mutation p.Y887H 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MC-06 1 109815912 109815912 G A CELSR2 Silent p.E2821E 0.16 TCGA-EE-A2MC-06 1 113153605 113153605 G A ST7L Silent p.F103F 0.14 TCGA-EE-A2MC-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.23 tolerated(0.06) benign(0.006) TCGA-EE-A2MC-06 1 11561654 11561654 G A PTCHD2 Missense_Mutation p.R202Q 0.21 tolerated_low_confidence(0.34) benign(0.206) TCGA-EE-A2MC-06 1 11854540 11854540 G A MTHFR Silent p.L408L 0.20 TCGA-EE-A2MC-06 1 120293530 120293530 C T HMGCS2 Silent p.V474V 0.20 TCGA-EE-A2MC-06 1 120298082 120298082 G A HMGCS2 Silent p.S385S 0.16 TCGA-EE-A2MC-06 1 120934393 120934393 C T FCGR1B Missense_Mutation p.E99K 0.08 tolerated(0.09) possibly_damaging(0.759) TCGA-EE-A2MC-06 1 12374214 12374214 C T VPS13D Silent p.S2326S 0.13 TCGA-EE-A2MC-06 1 12836148 12836148 G A PRAMEF12 Silent p.R250R 0.22 TCGA-EE-A2MC-06 1 12855737 12855737 C T PRAMEF1 Silent p.P339P 0.15 TCGA-EE-A2MC-06 1 12919684 12919684 G A PRAMEF2 Missense_Mutation p.G142R 0.16 tolerated(0.4) benign(0.395) TCGA-EE-A2MC-06 1 144946681 144946681 G A PDE4DIP Missense_Mutation p.R194W 0.19 deleterious(0.02) possibly_damaging(0.663) TCGA-EE-A2MC-06 1 149880812 149880812 G A SV2A Silent p.S437S 0.14 TCGA-EE-A2MC-06 1 151378399 151378399 G A POGZ Nonsense_Mutation p.Q1038* 0.13 TCGA-EE-A2MC-06 1 151740538 151740538 G A OAZ3 Missense_Mutation p.G58E 0.14 tolerated(0.4) probably_damaging(1) TCGA-EE-A2MC-06 1 152059449 152059449 C T TCHHL1 Missense_Mutation p.E237K 0.16 tolerated(1) benign(0.001) TCGA-EE-A2MC-06 1 154685954 154685954 C T KCNN3 Missense_Mutation p.V629M 0.17 deleterious(0.01) benign(0.412) TCGA-EE-A2MC-06 1 156354566 156354566 C T RHBG Intron 0.29 TCGA-EE-A2MC-06 1 156821960 156821960 C T INSRR Missense_Mutation p.A221T 0.14 tolerated(0.13) benign(0.226) TCGA-EE-A2MC-06 1 158263274 158263274 C T CD1C 3'UTR 0.12 TCGA-EE-A2MC-06 1 159284091 159284091 C T OR10J3 Missense_Mutation p.G120E 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MC-06 1 159409881 159409881 G A OR10J1 Silent p.Q111Q 0.14 TCGA-EE-A2MC-06 1 160012148 160012148 A G KCNJ10 Missense_Mutation p.F59L 0.17 tolerated(1) benign(0.42) TCGA-EE-A2MC-06 1 160914847 160914847 C T ITLN2 3'UTR 0.26 TCGA-EE-A2MC-06 1 161043552 161043552 G A PVRL4 Silent p.S397S 0.22 TCGA-EE-A2MC-06 1 161166389 161166389 C T ADAMTS4 Silent p.S305S 0.13 TCGA-EE-A2MC-06 1 16356460 16356460 G A CLCNKA Missense_Mutation p.G433E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 1 165513753 165513753 G A LRRC52 Missense_Mutation p.G74R 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2MC-06 1 169510174 169510174 G A F5 Missense_Mutation p.S1385F 0.18 deleterious_low_confidence(0.03) benign(0.177) TCGA-EE-A2MC-06 1 171544202 171544202 C T PRRC2C Missense_Mutation p.S2295L 0.16 probably_damaging(0.99) TCGA-EE-A2MC-06 1 172007500 172007500 G A DNM3 Silent p.R297R 0.14 TCGA-EE-A2MC-06 1 17250864 17250864 G A CROCC Missense_Mutation p.E81K 0.16 probably_damaging(0.999) TCGA-EE-A2MC-06 1 173010837 173010837 T A TNFSF18 Missense_Mutation p.K90N 0.18 tolerated(0.07) probably_damaging(0.929) TCGA-EE-A2MC-06 1 173155672 173155672 C T TNFSF4 Missense_Mutation p.E179K 0.14 tolerated(0.66) benign(0.144) TCGA-EE-A2MC-06 1 173552678 173552678 G A SLC9C2 Missense_Mutation p.R203W 0.27 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MC-06 1 175116171 175116171 G A TNN Silent p.K1288K 0.12 TCGA-EE-A2MC-06 1 176838078 176838078 C T ASTN1 Silent p.L1183L 0.22 TCGA-EE-A2MC-06 1 176905368 176905368 G A ASTN1 Intron 0.26 TCGA-EE-A2MC-06 1 179304712 179304712 G A SOAT1 Silent p.K83K 0.12 TCGA-EE-A2MC-06 1 181745324 181745324 G A CACNA1E Missense_Mutation p.E1743K 0.17 deleterious(0) benign(0.305) TCGA-EE-A2MC-06 1 1849479 1849479 C T TMEM52 Missense_Mutation p.D158N 0.18 tolerated(0.1) probably_damaging(0.949) TCGA-EE-A2MC-06 1 19426927 19426927 G A UBR4 Silent p.N4388N 0.20 TCGA-EE-A2MC-06 1 19494556 19494556 G A UBR4 Silent p.L1288L 0.16 TCGA-EE-A2MC-06 1 196965275 196965275 G A CFHR5 Missense_Mutation p.G305E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 1 197390734 197390734 C T CRB1 Silent p.I592I 0.22 TCGA-EE-A2MC-06 1 197396670 197396670 C T CRB1 Missense_Mutation p.L739F 0.17 deleterious(0.02) benign(0.038) TCGA-EE-A2MC-06 1 200017919 200017919 G A NR5A2 Silent p.R361R 0.21 TCGA-EE-A2MC-06 1 201966479 201966479 C T RNPEP Missense_Mutation p.P296L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 1 204226886 204226886 G A PLEKHA6 Silent p.S373S 0.22 TCGA-EE-A2MC-06 1 205494284 205494284 G A CDK18 Silent p.G169G 0.19 TCGA-EE-A2MC-06 1 207499049 207499049 C T CD55 Silent p.S187S 0.20 TCGA-EE-A2MC-06 1 207753681 207753681 C T CR1 Missense_Mutation p.P1678L 0.21 deleterious(0) possibly_damaging(0.803) TCGA-EE-A2MC-06 1 209796416 209796416 G A LAMB3 Missense_Mutation p.P823S 0.16 tolerated(0.07) benign(0.142) TCGA-EE-A2MC-06 1 211545679 211545679 C T TRAF5 Missense_Mutation p.R437C 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2MC-06 1 21205977 21205977 A C EIF4G3 Missense_Mutation p.L771V 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 1 215987180 215987180 G A USH2A Missense_Mutation p.P3213S 0.20 benign(0.027) TCGA-EE-A2MC-06 1 228492989 228492989 G A OBSCN Missense_Mutation p.R4811K 0.14 benign(0.006) TCGA-EE-A2MC-06 1 22974326 22974326 C T C1QC 3'UTR 0.18 TCGA-EE-A2MC-06 1 232940933 232940933 C T MAP10 Missense_Mutation p.P55L 0.19 possibly_damaging(0.851) TCGA-EE-A2MC-06 1 234454657 234454657 G A SLC35F3 Missense_Mutation p.G372E 0.08 tolerated(0.09) possibly_damaging(0.549) TCGA-EE-A2MC-06 1 237947118 237947118 G T RYR2 Missense_Mutation p.D4036Y 0.15 probably_damaging(0.976) TCGA-EE-A2MC-06 1 247769773 247769773 G A OR2G3 Missense_Mutation p.D296N 0.16 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A2MC-06 1 247902762 247902762 C T OR14K1 Silent p.T282T 0.23 TCGA-EE-A2MC-06 1 26085122 26085122 C T MAN1C1 Silent p.I323I 0.20 TCGA-EE-A2MC-06 1 26317280 26317280 G A PAFAH2 Missense_Mutation p.P10S 0.14 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MC-06 1 28905116 28905116 A C TRNAU1AP 3'Flank 0.21 TCGA-EE-A2MC-06 1 28907136 28907136 T G TRNAU1AP 3'Flank 0.24 TCGA-EE-A2MC-06 1 32256508 32256508 C T SPOCD1 Missense_Mutation p.G1116D 0.29 tolerated(0.11) benign(0.023) TCGA-EE-A2MC-06 1 32560427 32560427 C T TMEM39B Silent p.L324L 0.17 TCGA-EE-A2MC-06 1 33138492 33138492 T C RBBP4 Missense_Mutation p.V401A 0.17 deleterious(0.02) benign(0.332) TCGA-EE-A2MC-06 1 34080129 34080129 C T CSMD2 Nonsense_Mutation p.W1996* 0.14 TCGA-EE-A2MC-06 1 34285407 34285407 C T CSMD2 Missense_Mutation p.E371K 0.09 tolerated(0.1) possibly_damaging(0.86) TCGA-EE-A2MC-06 1 35260119 35260119 G A GJA4 Missense_Mutation p.R102Q 0.13 tolerated(0.38) benign(0.116) TCGA-EE-A2MC-06 1 35334316 35334316 G A DLGAP3 Missense_Mutation p.P792L 0.29 tolerated(0.24) possibly_damaging(0.583) TCGA-EE-A2MC-06 1 3551599 3551599 C T WRAP73 Missense_Mutation p.E260K 0.18 deleterious(0.01) benign(0.144) TCGA-EE-A2MC-06 1 3551600 3551600 C T WRAP73 Silent p.T259T 0.17 TCGA-EE-A2MC-06 1 35926016 35926016 G A KIAA0319L Silent p.I439I 0.15 TCGA-EE-A2MC-06 1 36299718 36299718 A G AGO4 Missense_Mutation p.T503A 0.10 tolerated(0.31) benign(0.001) TCGA-EE-A2MC-06 1 39824860 39824860 C T MACF1 Silent p.L1994L 0.23 TCGA-EE-A2MC-06 1 40705609 40705609 C T RLF Silent p.V1745V 0.20 TCGA-EE-A2MC-06 1 42865133 42865133 A G RIMKLA Silent p.V74V 0.21 TCGA-EE-A2MC-06 1 43825482 43825482 T C CDC20 Silent p.N139N 0.15 TCGA-EE-A2MC-06 1 44087635 44087635 C T PTPRF Silent p.A1895A 0.19 TCGA-EE-A2MC-06 1 46978105 46978105 A C DMBX1 Missense_Mutation p.N358T 0.14 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-EE-A2MC-06 1 47284435 47284435 G A CYP4B1 Silent p.K496K 0.23 TCGA-EE-A2MC-06 1 55144997 55144997 G A MROH7 Missense_Mutation p.G704E 0.17 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MC-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.11 TCGA-EE-A2MC-06 1 5927849 5927849 G A NPHP4 Silent p.L1141L 0.17 TCGA-EE-A2MC-06 1 70225938 70225938 C T LRRC7 Silent p.F17F 0.24 TCGA-EE-A2MC-06 1 74507419 74507419 C T LRRIQ3 Missense_Mutation p.R399Q 0.24 tolerated(0.64) benign(0.001) TCGA-EE-A2MC-06 1 75039065 75039065 C T C1orf173 Missense_Mutation p.E777K 0.14 tolerated(0.07) possibly_damaging(0.506) TCGA-EE-A2MC-06 1 75171935 75171935 G A CRYZ 3'UTR 0.24 TCGA-EE-A2MC-06 1 77635030 77635030 G A PIGK Missense_Mutation p.P97L 0.18 tolerated(0.15) probably_damaging(0.995) TCGA-EE-A2MC-06 1 86289269 86289269 C T COL24A1 Missense_Mutation p.E1247K 0.17 tolerated(0.14) benign(0.072) TCGA-EE-A2MC-06 1 898516 898516 G A KLHL17 Missense_Mutation p.G357E 0.14 tolerated(0.09) benign(0.118) TCGA-EE-A2MC-06 20 10273890 10273890 G A SNAP25 Missense_Mutation p.G82E 0.18 tolerated(1) benign(0.293) TCGA-EE-A2MC-06 20 18541303 18541303 A G SEC23B Silent p.G741G 0.20 TCGA-EE-A2MC-06 20 24930087 24930087 G A CST7 5'UTR 0.21 TCGA-EE-A2MC-06 20 3026366 3026366 C T GNRH2 Missense_Mutation p.S116F 0.18 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-EE-A2MC-06 20 30371683 30371683 C T TPX2 Missense_Mutation p.H458Y 0.13 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MC-06 20 333860 333860 C T NRSN2 Silent p.L66L 0.17 TCGA-EE-A2MC-06 20 33875020 33875020 C T FAM83C Missense_Mutation p.G521E 0.22 deleterious_low_confidence(0) benign(0.415) TCGA-EE-A2MC-06 20 3651787 3651787 G A ADAM33 Silent p.F702F 0.19 TCGA-EE-A2MC-06 20 3779074 3779074 C T CDC25B Missense_Mutation p.S115F 0.17 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MC-06 20 40747136 40747136 C T PTPRT Silent p.P963P 0.34 TCGA-EE-A2MC-06 20 43251572 43251572 C T ADA Splice_Site p.X227_splice 0.22 TCGA-EE-A2MC-06 20 51870404 51870404 C T TSHZ2 Missense_Mutation p.S136F 0.11 deleterious(0) probably_damaging(0.926) TCGA-EE-A2MC-06 20 51870470 51870470 G A TSHZ2 Missense_Mutation p.R158Q 0.10 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2MC-06 20 51872802 51872802 C T TSHZ2 Silent p.F935F 0.16 TCGA-EE-A2MC-06 20 57766789 57766789 G A ZNF831 Missense_Mutation p.E239K 0.19 tolerated(0.44) benign(0.006) TCGA-EE-A2MC-06 20 57828989 57828989 A G ZNF831 Missense_Mutation p.T1409A 0.13 tolerated(0.52) benign(0.004) TCGA-EE-A2MC-06 20 5903702 5903702 G A CHGB Silent p.K304K 0.40 TCGA-EE-A2MC-06 20 62407303 62407303 G A ZBTB46 Missense_Mutation p.S317F 0.14 deleterious(0.01) benign(0.035) TCGA-EE-A2MC-06 20 62848451 62848451 C T MYT1 Missense_Mutation p.P555S 0.14 probably_damaging(0.999) TCGA-EE-A2MC-06 20 9520198 9520198 C T PAK7 Missense_Mutation p.A691T 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.19 tolerated(0.21) benign(0.053) TCGA-EE-A2MC-06 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.11 deleterious(0.01) benign(0.021) TCGA-EE-A2MC-06 21 27852747 27852747 C T CYYR1 Missense_Mutation p.G60S 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 21 30357190 30357190 G A LTN1 Silent p.I179I 0.21 TCGA-EE-A2MC-06 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.20 TCGA-EE-A2MC-06 21 34903147 34903147 G A GART Missense_Mutation p.P214L 0.16 tolerated(0.43) probably_damaging(0.911) TCGA-EE-A2MC-06 21 34923547 34923547 G A SON Silent p.S670S 0.19 TCGA-EE-A2MC-06 21 37602939 37602939 G A DOPEY2 Silent p.K619K 0.12 TCGA-EE-A2MC-06 21 37602940 37602940 G A DOPEY2 Missense_Mutation p.G620S 0.12 deleterious(0.03) benign(0.371) TCGA-EE-A2MC-06 21 37636076 37636076 C T DOPEY2 Silent p.P1817P 0.18 TCGA-EE-A2MC-06 21 39086776 39086776 C T KCNJ6 Silent p.R228R 0.20 TCGA-EE-A2MC-06 21 45817680 45817680 A G TRPM2 Silent p.E661E 0.14 TCGA-EE-A2MC-06 21 47666294 47666294 G A MCM3AP Missense_Mutation p.S1525L 0.23 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MC-06 22 17073081 17073081 C T CCT8L2 Silent p.E120E 0.25 TCGA-EE-A2MC-06 22 21988630 21988630 G C CCDC116 Missense_Mutation p.S131T 0.15 deleterious(0.03) possibly_damaging(0.7) TCGA-EE-A2MC-06 22 24919732 24919732 G A UPB1 Nonsense_Mutation p.W354* 0.15 TCGA-EE-A2MC-06 22 26709827 26709827 C T SEZ6L Silent p.I658I 0.16 TCGA-EE-A2MC-06 22 29456719 29456719 T C C22orf31 Missense_Mutation p.N39S 0.18 tolerated(0.17) benign(0.136) TCGA-EE-A2MC-06 22 31536283 31536283 C T PLA2G3 Missense_Mutation p.G20S 0.13 tolerated(0.24) benign(0.064) TCGA-EE-A2MC-06 22 31536284 31536284 C T PLA2G3 Silent p.G19G 0.12 TCGA-EE-A2MC-06 22 31608379 31608379 C T LIMK2 5'UTR 0.17 TCGA-EE-A2MC-06 22 32479098 32479098 G A SLC5A1 Silent p.Q207Q 0.21 TCGA-EE-A2MC-06 22 32853335 32853335 G A BPIFC Silent p.F13F 0.22 TCGA-EE-A2MC-06 22 35478635 35478635 G A ISX Silent p.R118R 0.25 TCGA-EE-A2MC-06 22 36715637 36715637 G A MYH9 Silent p.I352I 0.20 TCGA-EE-A2MC-06 22 37966596 37966596 C T LGALS2 Missense_Mutation p.G79E 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MC-06 22 38121646 38121646 C T TRIOBP Missense_Mutation p.S1028L 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MC-06 22 39966983 39966983 G A CACNA1I Missense_Mutation p.V76M 0.21 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MC-06 22 40037035 40037035 G A CACNA1I Missense_Mutation p.D302N 0.24 tolerated(0.32) possibly_damaging(0.85) TCGA-EE-A2MC-06 22 40139867 40139867 G A ENTHD1 Silent p.S547S 0.22 TCGA-EE-A2MC-06 22 45813720 45813720 T C RIBC2 Silent p.D145D 0.14 TCGA-EE-A2MC-06 22 50926360 50926360 G A MIOX Missense_Mutation p.E75K 0.13 deleterious(0.01) possibly_damaging(0.604) TCGA-EE-A2MC-06 2 102000038 102000038 T C CREG2 Missense_Mutation p.M190V 0.21 tolerated(0.64) benign(0.008) TCGA-EE-A2MC-06 2 102626052 102626052 G A IL1R2 Silent p.G32G 0.16 TCGA-EE-A2MC-06 2 102968276 102968276 C T IL1RL1 Silent p.S522S 0.10 TCGA-EE-A2MC-06 2 107460392 107460392 G A ST6GAL2 Silent p.F14F 0.17 TCGA-EE-A2MC-06 2 108487685 108487685 G A RGPD4 Silent p.R1075R 0.13 TCGA-EE-A2MC-06 2 113674773 113674773 C T IL37 Silent p.V71V 0.31 TCGA-EE-A2MC-06 2 113783714 113783714 G A IL36B Silent p.F119F 0.21 TCGA-EE-A2MC-06 2 11752710 11752710 G A GREB1 Missense_Mutation p.M1032I 0.22 tolerated(0.06) benign(0.005) TCGA-EE-A2MC-06 2 128477054 128477054 G A WDR33 Missense_Mutation p.P849S 0.15 tolerated_low_confidence(0.17) probably_damaging(0.968) TCGA-EE-A2MC-06 2 128703068 128703068 A G SAP130 Missense_Mutation p.W981R 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MC-06 2 132558550 132558550 T C C2orf27B 5'UTR 0.21 TCGA-EE-A2MC-06 2 133402923 133402923 A G GPR39 Missense_Mutation p.N369S 0.21 deleterious(0) benign(0.14) TCGA-EE-A2MC-06 2 133538682 133538682 T C NCKAP5 Silent p.G1664G 0.20 TCGA-EE-A2MC-06 2 135206361 135206361 C T MGAT5 Silent p.V723V 0.08 TCGA-EE-A2MC-06 2 137872758 137872758 C T THSD7B Missense_Mutation p.P422S 0.20 tolerated(0.59) possibly_damaging(0.803) TCGA-EE-A2MC-06 2 142004865 142004865 T A LRP1B Silent p.G174G 0.19 TCGA-EE-A2MC-06 2 152222575 152222575 C T TNFAIP6 Missense_Mutation p.H80Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 2 15448367 15448367 G A NBAS Silent p.F1590F 0.25 TCGA-EE-A2MC-06 2 158400965 158400965 C T ACVR1C Missense_Mutation p.G312D 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 2 163044741 163044741 G A FAP Silent p.L584L 0.18 TCGA-EE-A2MC-06 2 166905438 166905438 C T SCN1A Missense_Mutation p.G329D 0.19 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MC-06 2 167056225 167056225 G A SCN9A Missense_Mutation p.P1631S 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MC-06 2 168101368 168101368 G A XIRP2 Missense_Mutation p.E1156K 0.19 probably_damaging(0.947) TCGA-EE-A2MC-06 2 168104646 168104646 G A XIRP2 Silent p.L2248L 0.15 TCGA-EE-A2MC-06 2 169312971 169312971 T C CERS6 Silent p.L5L 0.16 TCGA-EE-A2MC-06 2 170002290 170002290 G A LRP2 Nonsense_Mutation p.R4319* 0.11 TCGA-EE-A2MC-06 2 170055365 170055365 G A LRP2 Missense_Mutation p.P2837S 0.31 benign(0.137) TCGA-EE-A2MC-06 2 173460628 173460628 C T PDK1 Silent p.N414N 0.29 TCGA-EE-A2MC-06 2 179435133 179435133 C T TTN Silent p.V25242V 0.22 TCGA-EE-A2MC-06 2 179440423 179440423 C T TTN Missense_Mutation p.R23479Q 0.20 TCGA-EE-A2MC-06 2 179442511 179442511 C T TTN Missense_Mutation p.R22881Q 0.14 TCGA-EE-A2MC-06 2 179467033 179467033 C T TTN Missense_Mutation p.E18366K 0.15 TCGA-EE-A2MC-06 2 179490104 179490104 C T TTN Missense_Mutation p.G14815E 0.16 TCGA-EE-A2MC-06 2 179497685 179497685 C T TTN Silent p.Q14391Q 0.13 TCGA-EE-A2MC-06 2 179582511 179582511 T A TTN Nonsense_Mutation p.R8364* 0.32 TCGA-EE-A2MC-06 2 179584176 179584176 G A TTN Missense_Mutation p.R7981W 0.13 TCGA-EE-A2MC-06 2 179596537 179596537 C T TTN Missense_Mutation p.D5689N 0.13 TCGA-EE-A2MC-06 2 179612023 179612023 A G TTN Intron 0.16 TCGA-EE-A2MC-06 2 179613013 179613013 C T TTN Intron 0.12 TCGA-EE-A2MC-06 2 179614318 179614318 G A TTN Intron 0.10 TCGA-EE-A2MC-06 2 179614469 179614469 C T TTN Intron 0.23 TCGA-EE-A2MC-06 2 179736992 179736992 C T CCDC141 Missense_Mutation p.M649I 0.09 tolerated(0.47) benign(0.001) TCGA-EE-A2MC-06 2 182360653 182360653 C T ITGA4 Missense_Mutation p.P510L 0.22 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MC-06 2 185801341 185801341 G A ZNF804A Silent p.E406E 0.16 TCGA-EE-A2MC-06 2 189875011 189875011 C T COL3A1 Missense_Mutation p.P1311S 0.18 unknown(0) TCGA-EE-A2MC-06 2 189933543 189933543 G A COL5A2 Missense_Mutation p.P409L 0.10 probably_damaging(0.974) TCGA-EE-A2MC-06 2 190535171 190535171 C T ASNSD1 Missense_Mutation p.P551S 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 2 192701396 192701396 G A SDPR Silent p.S177S 0.18 TCGA-EE-A2MC-06 2 196571356 196571356 C T SLC39A10 Silent p.I411I 0.11 TCGA-EE-A2MC-06 2 200188671 200188671 G A SATB2 Missense_Mutation p.S466L 0.17 deleterious(0.05) benign(0.217) TCGA-EE-A2MC-06 2 202619388 202619388 G A ALS2 Missense_Mutation p.P493L 0.15 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MC-06 2 20508338 20508338 G A PUM2 Missense_Mutation p.P176S 0.16 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-EE-A2MC-06 2 208693150 208693150 G A PLEKHM3 Missense_Mutation p.R727C 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 2 211179661 211179661 C T MYL1 Missense_Mutation p.E36K 0.37 tolerated(0.26) benign(0.037) TCGA-EE-A2MC-06 2 212495282 212495282 A G ERBB4 Missense_Mutation p.F662L 0.23 tolerated(1) benign(0.019) TCGA-EE-A2MC-06 2 215845306 215845306 G A ABCA12 Silent p.I1547I 0.11 TCGA-EE-A2MC-06 2 216232655 216232655 C T FN1 Missense_Mutation p.E2317K 0.16 tolerated(0.35) possibly_damaging(0.754) TCGA-EE-A2MC-06 2 219000400 219000400 C T CXCR2 Silent p.I292I 0.26 TCGA-EE-A2MC-06 2 219854951 219854951 G A CRYBA2 3'UTR 0.12 TCGA-EE-A2MC-06 2 219883791 219883791 C T CCDC108 Missense_Mutation p.G1195E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 2 220471783 220471783 C T STK11IP Silent p.V392V 0.21 TCGA-EE-A2MC-06 2 228884687 228884687 C T SPHKAP Missense_Mutation p.A295T 0.26 tolerated(0.66) benign(0.004) TCGA-EE-A2MC-06 2 233839602 233839602 G A NGEF 5'UTR 0.16 TCGA-EE-A2MC-06 2 234247353 234247353 G A SAG Missense_Mutation p.G326R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 2 234442325 234442325 C T USP40 Missense_Mutation p.R435K 0.12 tolerated(0.78) benign(0.002) TCGA-EE-A2MC-06 2 234638206 234638206 C T UGT1A3 Missense_Mutation p.S145F 0.13 tolerated(0.05) benign(0.33) TCGA-EE-A2MC-06 2 238244917 238244917 C T COL6A3 Silent p.A2942A 0.21 TCGA-EE-A2MC-06 2 239162199 239162199 G A PER2 Missense_Mutation p.P822L 0.17 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2MC-06 2 239162200 239162200 G A PER2 Missense_Mutation p.P822S 0.17 deleterious(0.05) benign(0.266) TCGA-EE-A2MC-06 2 242139598 242139598 C T ANO7 Missense_Mutation p.P225L 0.31 tolerated(0.53) benign(0.006) TCGA-EE-A2MC-06 2 26680944 26680944 G A OTOF 3'UTR 0.16 TCGA-EE-A2MC-06 2 27550131 27550131 G A GTF3C2 Silent p.L810L 0.15 TCGA-EE-A2MC-06 2 29450451 29450451 G A ALK Missense_Mutation p.P968L 0.22 tolerated(0.34) probably_damaging(0.91) TCGA-EE-A2MC-06 2 3447553 3447553 C T TRAPPC12 Missense_Mutation p.S474F 0.13 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MC-06 2 37235774 37235774 G A HEATR5B Missense_Mutation p.S1501F 0.12 deleterious(0.01) possibly_damaging(0.495) TCGA-EE-A2MC-06 2 39090550 39090550 T C DHX57 Silent p.K112K 0.15 TCGA-EE-A2MC-06 2 49217773 49217773 T C FSHR Silent p.L126L 0.16 TCGA-EE-A2MC-06 2 63660906 63660906 G A WDPCP Silent p.L266L 0.12 TCGA-EE-A2MC-06 2 64211013 64211013 G A VPS54 Missense_Mutation p.P41S 0.22 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EE-A2MC-06 2 65540625 65540625 G A SPRED2 3'UTR 0.14 TCGA-EE-A2MC-06 2 69204770 69204770 A G GKN1 Missense_Mutation p.N37S 0.13 tolerated(0.16) benign(0.091) TCGA-EE-A2MC-06 2 70387889 70387889 G A C2orf42 Nonsense_Mutation p.Q462* 0.13 TCGA-EE-A2MC-06 2 71591308 71591308 C T ZNF638 Missense_Mutation p.P548L 0.21 tolerated(0.19) benign(0.01) TCGA-EE-A2MC-06 2 71840531 71840531 C T DYSF Silent p.I1485I 0.26 TCGA-EE-A2MC-06 2 73519395 73519395 C T EGR4 Silent p.G320G 0.16 TCGA-EE-A2MC-06 2 73677820 73677820 G A ALMS1 Missense_Mutation p.S1388N 0.22 benign(0.005) TCGA-EE-A2MC-06 2 73716847 73716847 C T ALMS1 Silent p.F2586F 0.19 TCGA-EE-A2MC-06 2 79971629 79971629 A T CTNNA2 Missense_Mutation p.E73D 0.25 tolerated(0.41) benign(0.001) TCGA-EE-A2MC-06 2 85788065 85788065 C T GGCX Silent p.R29R 0.06 TCGA-EE-A2MC-06 2 86979111 86979111 C T RMND5A Silent p.F126F 0.11 TCGA-EE-A2MC-06 2 88425859 88425859 C T FABP1 Missense_Mutation p.E26K 0.15 deleterious(0.02) benign(0.021) TCGA-EE-A2MC-06 2 99860574 99860574 G A LYG2 Silent p.V136V 0.22 TCGA-EE-A2MC-06 3 108073967 108073967 C T HHLA2 Missense_Mutation p.L142F 0.41 tolerated(0.58) benign(0.06) TCGA-EE-A2MC-06 3 108363531 108363531 C A DZIP3 Silent p.P554P 0.18 TCGA-EE-A2MC-06 3 111319612 111319612 G A CD96 Missense_Mutation p.G329E 0.16 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MC-06 3 119133527 119133527 C T ARHGAP31 Silent p.P917P 0.21 TCGA-EE-A2MC-06 3 121001140 121001140 A G STXBP5L Missense_Mutation p.N713S 0.14 tolerated(0.42) possibly_damaging(0.634) TCGA-EE-A2MC-06 3 121712802 121712802 G A ILDR1 Missense_Mutation p.S265F 0.16 tolerated(0.06) benign(0.326) TCGA-EE-A2MC-06 3 121838397 121838397 C T CD86 3'UTR 0.31 TCGA-EE-A2MC-06 3 122156098 122156098 C T KPNA1 Silent p.L347L 0.19 TCGA-EE-A2MC-06 3 12421299 12421299 T G PPARG Missense_Mutation p.F60C 0.19 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-EE-A2MC-06 3 124646598 124646598 G A MUC13 Missense_Mutation p.P98S 0.21 deleterious(0.02) benign(0.117) TCGA-EE-A2MC-06 3 126132978 126132978 G A CCDC37 Missense_Mutation p.D61N 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 3 126749212 126749212 C T PLXNA1 Nonsense_Mutation p.Q1730* 0.13 TCGA-EE-A2MC-06 3 130292831 130292831 C T COL6A6 Silent p.F1003F 0.08 TCGA-EE-A2MC-06 3 130292832 130292832 C T COL6A6 Missense_Mutation p.L1004F 0.08 tolerated(0.08) probably_damaging(1) TCGA-EE-A2MC-06 3 13363298 13363298 C T NUP210 Silent p.T1651T 0.16 TCGA-EE-A2MC-06 3 13368919 13368919 G A NUP210 Silent p.I1435I 0.38 TCGA-EE-A2MC-06 3 137822773 137822773 G A DZIP1L Missense_Mutation p.P14L 0.15 tolerated(0.21) possibly_damaging(0.548) TCGA-EE-A2MC-06 3 138738753 138738753 G A PRR23B Missense_Mutation p.P251S 0.16 tolerated(0.23) benign(0.334) TCGA-EE-A2MC-06 3 138738754 138738754 G A PRR23B Silent p.L250L 0.16 TCGA-EE-A2MC-06 3 142137708 142137708 G A XRN1 Silent p.L397L 0.14 TCGA-EE-A2MC-06 3 143185918 143185918 C T SLC9A9 Missense_Mutation p.G477E 0.29 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MC-06 3 14725854 14725854 G A C3orf20 Missense_Mutation p.G197E 0.25 tolerated(0.08) benign(0.27) TCGA-EE-A2MC-06 3 14861871 14861871 G A FGD5 Silent p.V431V 0.22 TCGA-EE-A2MC-06 3 169099049 169099049 C T MECOM Missense_Mutation p.E125K 0.15 tolerated(0.14) benign(0.079) TCGA-EE-A2MC-06 3 175520796 175520796 C T NAALADL2 Silent p.N731N 0.17 TCGA-EE-A2MC-06 3 184062652 184062652 G T FAM131A Missense_Mutation p.C332F 0.23 tolerated(0.16) benign(0.124) TCGA-EE-A2MC-06 3 184062653 184062653 C T FAM131A Silent p.C332C 0.23 TCGA-EE-A2MC-06 3 185232237 185232237 C T LIPH Missense_Mutation p.R352K 0.20 tolerated(0.3) benign(0.001) TCGA-EE-A2MC-06 3 189612176 189612176 G A TP63 Missense_Mutation p.R643Q 0.16 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A2MC-06 3 190030677 190030677 C T CLDN1 Silent p.A124A 0.23 TCGA-EE-A2MC-06 3 193029654 193029654 C T ATP13A5 Missense_Mutation p.G799E 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 3 38674787 38674787 G A SCN5A Silent p.F4F 0.21 TCGA-EE-A2MC-06 3 38760228 38760228 G A SCN10A Silent p.F1199F 0.30 TCGA-EE-A2MC-06 3 38889119 38889119 C T SCN11A Missense_Mutation p.R1481Q 0.09 deleterious(0.02) probably_damaging(0.915) TCGA-EE-A2MC-06 3 39227520 39227520 C T XIRP1 Silent p.Q1139Q 0.08 TCGA-EE-A2MC-06 3 40433399 40433399 C T ENTPD3 Intron 0.16 TCGA-EE-A2MC-06 3 42735179 42735179 T G HHATL Missense_Mutation p.N393T 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 3 44488387 44488387 G A ZNF445 Missense_Mutation p.R926C 0.19 tolerated(0.22) possibly_damaging(0.689) TCGA-EE-A2MC-06 3 44491977 44491977 T C ZNF445 Missense_Mutation p.D261G 0.25 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A2MC-06 3 44491978 44491978 C A ZNF445 Missense_Mutation p.D261Y 0.25 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MC-06 3 44945383 44945383 C T TGM4 Missense_Mutation p.H327Y 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 3 48956243 48956243 C T ARIH2OS Missense_Mutation p.D114N 0.16 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-EE-A2MC-06 3 49713214 49713214 C T APEH Silent p.F120F 0.31 TCGA-EE-A2MC-06 3 52183354 52183354 G A POC1A Silent p.V109V 0.19 TCGA-EE-A2MC-06 3 52265180 52265180 G A TWF2 Missense_Mutation p.S149L 0.18 tolerated(0.34) benign(0) TCGA-EE-A2MC-06 3 55922419 55922419 C T ERC2 Missense_Mutation p.M854I 0.17 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MC-06 3 57542496 57542496 G A PDE12 Silent p.E130E 0.20 TCGA-EE-A2MC-06 3 7340474 7340474 C T GRM7 Silent p.S280S 0.25 TCGA-EE-A2MC-06 3 73440172 73440172 A C PDZRN3 Missense_Mutation p.S450R 0.23 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MC-06 3 7620311 7620311 G A GRM7 Missense_Mutation p.R573Q 0.12 tolerated(0.15) possibly_damaging(0.884) TCGA-EE-A2MC-06 3 89478279 89478279 G A EPHA3 Missense_Mutation p.E700K 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 3 97888044 97888044 C T OR5H15 Silent p.T167T 0.12 TCGA-EE-A2MC-06 3 97888287 97888287 C T OR5H15 Silent p.V248V 0.28 TCGA-EE-A2MC-06 3 9948439 9948439 C T IL17RE Missense_Mutation p.S139F 0.22 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2MC-06 4 100235103 100235103 C T ADH1B Missense_Mutation p.E235K 0.18 tolerated(0.33) benign(0.443) TCGA-EE-A2MC-06 4 101439180 101439180 G A EMCN 5'UTR 0.41 TCGA-EE-A2MC-06 4 10447100 10447100 G A ZNF518B Nonsense_Mutation p.Q285* 0.16 TCGA-EE-A2MC-06 4 106879666 106879666 G A NPNT Missense_Mutation p.E430K 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2MC-06 4 110638855 110638855 G A PLA2G12A Silent p.I100I 0.16 TCGA-EE-A2MC-06 4 110667389 110667389 C T CFI Missense_Mutation p.G473E 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 4 141583072 141583072 C T TBC1D9 Missense_Mutation p.R593Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 4 141600151 141600151 G A TBC1D9 Nonsense_Mutation p.R266* 0.19 TCGA-EE-A2MC-06 4 146653646 146653646 T C C4orf51 Silent p.S181S 0.24 TCGA-EE-A2MC-06 4 162459348 162459348 G A FSTL5 Missense_Mutation p.L428F 0.20 deleterious(0.02) possibly_damaging(0.741) TCGA-EE-A2MC-06 4 164394562 164394562 C T TKTL2 Missense_Mutation p.E109K 0.14 deleterious(0) benign(0.284) TCGA-EE-A2MC-06 4 166913964 166913964 G A TLL1 Missense_Mutation p.G97R 0.18 deleterious(0.04) benign(0.006) TCGA-EE-A2MC-06 4 16760786 16760786 C T LDB2 Missense_Mutation p.R77Q 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A2MC-06 4 183651352 183651352 G A TENM3 Splice_Site p.X862_splice 0.19 TCGA-EE-A2MC-06 4 183652127 183652127 T G TENM3 Missense_Mutation p.N934K 0.10 deleterious(0) possibly_damaging(0.727) TCGA-EE-A2MC-06 4 183664448 183664448 G A TENM3 Missense_Mutation p.G1169S 0.13 tolerated(0.05) benign(0.001) TCGA-EE-A2MC-06 4 20525515 20525515 C T SLIT2 Silent p.A421A 0.08 TCGA-EE-A2MC-06 4 20620412 20620412 G A SLIT2 Missense_Mutation p.R1457K 0.17 tolerated(0.93) probably_damaging(0.977) TCGA-EE-A2MC-06 4 2514858 2514858 G A RNF4 Silent p.E141E 0.21 TCGA-EE-A2MC-06 4 30723223 30723223 G A PCDH7 Missense_Mutation p.G60E 0.17 tolerated(0.34) possibly_damaging(0.842) TCGA-EE-A2MC-06 4 36083903 36083903 C T ARAP2 Missense_Mutation p.G1505E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 4 5624563 5624563 G C EVC2 Missense_Mutation p.D734E 0.09 tolerated(1) benign(0.214) TCGA-EE-A2MC-06 4 5868434 5868434 G A CRMP1 Missense_Mutation p.S144F 0.26 deleterious(0.01) possibly_damaging(0.806) TCGA-EE-A2MC-06 4 6349733 6349733 G A PPP2R2C Silent p.I210I 0.18 TCGA-EE-A2MC-06 4 6380249 6380249 G A PPP2R2C Silent p.F73F 0.26 TCGA-EE-A2MC-06 4 69343184 69343184 T A TMPRSS11E Missense_Mutation p.Y269N 0.18 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MC-06 4 69433848 69433848 C T UGT2B17 Missense_Mutation p.E119K 0.25 tolerated(0.54) benign(0.027) TCGA-EE-A2MC-06 4 69817217 69817217 C T UGT2A3 Missense_Mutation p.E88K 0.11 tolerated(0.52) benign(0.01) TCGA-EE-A2MC-06 4 70080454 70080454 G A UGT2B11 5'Flank 0.14 TCGA-EE-A2MC-06 4 70513009 70513009 G A UGT2A1 Silent p.F118F 0.22 TCGA-EE-A2MC-06 4 71509905 71509905 A G ENAM Missense_Mutation p.D921G 0.30 tolerated(0.08) benign(0.062) TCGA-EE-A2MC-06 4 77631427 77631427 C T SHROOM3 Missense_Mutation p.R148W 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MC-06 4 77660118 77660118 C T SHROOM3 Silent p.S264S 0.20 TCGA-EE-A2MC-06 4 77941690 77941690 C T SEPT11 Nonsense_Mutation p.R274* 0.17 TCGA-EE-A2MC-06 4 79440574 79440574 C T FRAS1 Silent p.S3493S 0.18 TCGA-EE-A2MC-06 4 88416266 88416266 A T SPARCL1 Nonsense_Mutation p.L23* 0.13 TCGA-EE-A2MC-06 4 88416267 88416267 A C SPARCL1 Missense_Mutation p.L23V 0.13 deleterious(0) benign(0.021) TCGA-EE-A2MC-06 4 88903754 88903754 G A SPP1 Nonsense_Mutation p.W217* 0.25 TCGA-EE-A2MC-06 4 94377028 94377028 G A GRID2 Silent p.L587L 0.23 TCGA-EE-A2MC-06 5 110835597 110835597 C T STARD4 Missense_Mutation p.R202Q 0.10 tolerated(1) benign(0.014) TCGA-EE-A2MC-06 5 111066616 111066616 G A NREP 3'UTR 0.18 TCGA-EE-A2MC-06 5 112769837 112769837 T C TSSK1B Missense_Mutation p.N234D 0.22 tolerated(0.5) benign(0.008) TCGA-EE-A2MC-06 5 115335561 115335561 G A AQPEP Missense_Mutation p.E493K 0.18 tolerated(0.06) benign(0.073) TCGA-EE-A2MC-06 5 121188463 121188463 A T FTMT 3'UTR 0.17 TCGA-EE-A2MC-06 5 1244488 1244488 G A SLC6A18 Missense_Mutation p.R499Q 0.12 deleterious(0.01) benign(0.26) TCGA-EE-A2MC-06 5 129015588 129015588 C T ADAMTS19 Missense_Mutation p.P874S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 5 132262827 132262827 G A AFF4 Missense_Mutation p.P346S 0.12 tolerated(0.34) probably_damaging(0.977) TCGA-EE-A2MC-06 5 13769610 13769610 C T DNAH5 Missense_Mutation p.M3240I 0.23 benign(0) TCGA-EE-A2MC-06 5 13883121 13883121 G A DNAH5 Silent p.V1022V 0.19 TCGA-EE-A2MC-06 5 140203659 140203659 G A PCDHA5 Missense_Mutation p.D767N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.74) TCGA-EE-A2MC-06 5 140208743 140208743 C T PCDHA6 Missense_Mutation p.S356F 0.15 deleterious_low_confidence(0.03) benign(0.399) TCGA-EE-A2MC-06 5 140216149 140216149 C G PCDHA7 Silent p.S727S 0.20 TCGA-EE-A2MC-06 5 140221939 140221939 G A PCDHA8 Missense_Mutation p.D345N 0.18 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EE-A2MC-06 5 140222932 140222932 C T PCDHA8 Missense_Mutation p.P676S 0.22 tolerated_low_confidence(0.18) benign(0.021) TCGA-EE-A2MC-06 5 140229995 140229995 G A PCDHA9 Missense_Mutation p.E639K 0.09 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-EE-A2MC-06 5 140249777 140249777 G A PCDHA11 Silent p.Q363Q 0.16 TCGA-EE-A2MC-06 5 140347637 140347637 G A PCDHAC2 Missense_Mutation p.R429Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MC-06 5 140389474 140389474 G A PCDHAC1 Silent p.Q948Q 0.22 TCGA-EE-A2MC-06 5 140552966 140552966 G A PCDHB7 Missense_Mutation p.D184N 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MC-06 5 140553189 140553189 G A PCDHB7 Missense_Mutation p.G258D 0.12 tolerated_low_confidence(0.22) benign(0.018) TCGA-EE-A2MC-06 5 140589876 140589876 C T PCDHB12 Missense_Mutation p.P466L 0.13 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-EE-A2MC-06 5 140595300 140595300 C T PCDHB13 Silent p.D535D 0.22 TCGA-EE-A2MC-06 5 140719379 140719379 C T PCDHGA2 Silent p.L281L 0.17 TCGA-EE-A2MC-06 5 140745293 140745293 C T PCDHGA5 Missense_Mutation p.P466S 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.718) TCGA-EE-A2MC-06 5 140784793 140784793 C T PCDHGA9 Silent p.S758S 0.18 TCGA-EE-A2MC-06 5 14304662 14304662 C T TRIO Silent p.H487H 0.16 TCGA-EE-A2MC-06 5 145439658 145439658 C T SH3RF2 Silent p.S595S 0.20 TCGA-EE-A2MC-06 5 149242808 149242808 C T PDE6A Missense_Mutation p.E794K 0.26 tolerated(0.14) benign(0.207) TCGA-EE-A2MC-06 5 149677766 149677766 G A ARSI Missense_Mutation p.P241S 0.15 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MC-06 5 150112930 150112930 C T DCTN4 Silent p.S179S 0.22 TCGA-EE-A2MC-06 5 150887168 150887168 C T FAT2 Missense_Mutation p.E4022K 0.29 benign(0.421) TCGA-EE-A2MC-06 5 154255034 154255034 G A CNOT8 3'UTR 0.17 TCGA-EE-A2MC-06 5 156655358 156655358 C T ITK Silent p.L234L 0.19 TCGA-EE-A2MC-06 5 159520234 159520234 G A PWWP2A Missense_Mutation p.R475C 0.14 deleterious(0.01) possibly_damaging(0.489) TCGA-EE-A2MC-06 5 160025933 160025933 G A ATP10B Silent p.F1136F 0.17 TCGA-EE-A2MC-06 5 169122807 169122807 G A DOCK2 Missense_Mutation p.D282N 0.15 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A2MC-06 5 169504715 169504715 C T DOCK2 Missense_Mutation p.P1623L 0.21 deleterious(0.05) benign(0.027) TCGA-EE-A2MC-06 5 176022617 176022617 G A CDHR2 Missense_Mutation p.G1293R 0.22 tolerated(0.05) benign(0.04) TCGA-EE-A2MC-06 5 176301447 176301447 G A UNC5A Missense_Mutation p.E420K 0.23 tolerated(0.62) benign(0.051) TCGA-EE-A2MC-06 5 178392621 178392621 C T ZNF454 Missense_Mutation p.H406Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 5 180166981 180166981 G A OR2Y1 Silent p.I26I 0.26 TCGA-EE-A2MC-06 5 19473723 19473723 C T CDH18 Missense_Mutation p.G662E 0.19 deleterious(0) benign(0.19) TCGA-EE-A2MC-06 5 36049478 36049478 A G UGT3A2 Missense_Mutation p.L119S 0.10 tolerated(0.39) benign(0.014) TCGA-EE-A2MC-06 5 41019062 41019062 G A MROH2B Missense_Mutation p.R834W 0.21 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MC-06 5 41149459 41149459 G A C6 Missense_Mutation p.S836F 0.16 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MC-06 5 43161823 43161823 T G ZNF131 Missense_Mutation p.S248A 0.21 tolerated(0.14) benign(0.107) TCGA-EE-A2MC-06 5 5240021 5240021 G A ADAMTS16 Missense_Mutation p.E836K 0.18 deleterious(0.03) probably_damaging(0.918) TCGA-EE-A2MC-06 5 72469697 72469697 G A TMEM174 Splice_Site p.X209_splice 0.17 TCGA-EE-A2MC-06 5 76028685 76028685 C T F2R Missense_Mutation p.S212F 0.17 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A2MC-06 5 76129513 76129513 T A F2RL1 Missense_Mutation p.C361S 0.18 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MC-06 5 79617343 79617343 G T SPZ1 3'UTR 0.23 TCGA-EE-A2MC-06 5 89990217 89990217 G A GPR98 Missense_Mutation p.M2548I 0.14 benign(0.38) TCGA-EE-A2MC-06 5 89990344 89990344 G A GPR98 Missense_Mutation p.E2591K 0.18 benign(0.17) TCGA-EE-A2MC-06 5 90041427 90041427 G A GPR98 Missense_Mutation p.E3597K 0.16 probably_damaging(0.973) TCGA-EE-A2MC-06 6 105609379 105609379 C T POPDC3 Missense_Mutation p.V136I 0.13 tolerated(0.27) benign(0.056) TCGA-EE-A2MC-06 6 106968334 106968334 C T AIM1 Missense_Mutation p.P676L 0.09 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MC-06 6 110757128 110757128 C T SLC22A16 Missense_Mutation p.G450R 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MC-06 6 117240361 117240361 G A RFX6 Missense_Mutation p.E362K 0.21 tolerated(0.12) benign(0.128) TCGA-EE-A2MC-06 6 132022417 132022417 C T OR2A4 Missense_Mutation p.G42E 0.12 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MC-06 6 136470276 136470276 C T PDE7B Missense_Mutation p.R124C 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 6 136599645 136599645 G A BCLAF1 Missense_Mutation p.S125F 0.10 deleterious_low_confidence(0) benign(0.341) TCGA-EE-A2MC-06 6 139262517 139262517 G A REPS1 Missense_Mutation p.P364S 0.10 deleterious(0) possibly_damaging(0.835) TCGA-EE-A2MC-06 6 144269301 144269301 C T PLAGL1 5'UTR 0.14 TCGA-EE-A2MC-06 6 144844169 144844169 G A UTRN Silent p.L1917L 0.20 TCGA-EE-A2MC-06 6 144844170 144844170 G A UTRN Missense_Mutation p.D1918N 0.19 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A2MC-06 6 151939132 151939132 C A CCDC170 Silent p.T666T 0.10 TCGA-EE-A2MC-06 6 152552588 152552588 C A SYNE1 Missense_Mutation p.A6993S 0.15 possibly_damaging(0.728) TCGA-EE-A2MC-06 6 160525776 160525776 C T IGF2R Missense_Mutation p.P2379L 0.24 deleterious(0.01) benign(0.103) TCGA-EE-A2MC-06 6 161560492 161560492 G A AGPAT4 Missense_Mutation p.S335F 0.08 tolerated(0.71) benign(0.35) TCGA-EE-A2MC-06 6 167571113 167571113 G A GPR31 Silent p.F69F 0.11 TCGA-EE-A2MC-06 6 22287724 22287734 ATAATAAGCAG - PRL Frame_Shift_Del p.S194* 0.13 TCGA-EE-A2MC-06 6 24423265 24423265 C T MRS2 Missense_Mutation p.P403L 0.11 tolerated_low_confidence(0.06) benign(0.026) TCGA-EE-A2MC-06 6 25726650 25726650 G A HIST1H2AA Missense_Mutation p.R36C 0.09 deleterious_low_confidence(0.03) benign(0.135) TCGA-EE-A2MC-06 6 26197066 26197066 A G HIST1H3D 3'Flank 0.15 TCGA-EE-A2MC-06 6 26506930 26506930 G A BTN1A1 Silent p.L243L 0.14 TCGA-EE-A2MC-06 6 28056379 28056379 G A ZNF165 Missense_Mutation p.E197K 0.13 tolerated(0.1) benign(0.027) TCGA-EE-A2MC-06 6 28269287 28269287 C T PGBD1 Silent p.C552C 0.25 TCGA-EE-A2MC-06 6 28554392 28554392 C T SCAND3 Missense_Mutation p.D35N 0.21 deleterious_low_confidence(0.02) benign(0.011) TCGA-EE-A2MC-06 6 30632959 30632959 G A DHX16 Silent p.S338S 0.12 TCGA-EE-A2MC-06 6 30920880 30920880 C T DPCR1 Missense_Mutation p.P1390S 0.17 tolerated(0.15) benign(0.001) TCGA-EE-A2MC-06 6 30955083 30955083 C T MUC21 Silent p.N377N 0.13 TCGA-EE-A2MC-06 6 31431687 31431687 C T HCP5 RNA 0.10 TCGA-EE-A2MC-06 6 31541416 31541416 C T LTA Silent p.I188I 0.21 TCGA-EE-A2MC-06 6 31686915 31686915 G A LY6G6C Silent p.F112F 0.19 TCGA-EE-A2MC-06 6 31753402 31753402 G A VARS Silent p.S403S 0.16 TCGA-EE-A2MC-06 6 31911216 31911216 G A CFB Silent p.R340R 0.19 TCGA-EE-A2MC-06 6 31928246 31928246 C T SKIV2L Missense_Mutation p.S131F 0.11 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MC-06 6 33156203 33156203 G A COL11A2 Missense_Mutation p.P181L 0.24 probably_damaging(0.997) TCGA-EE-A2MC-06 6 41001861 41001861 C T UNC5CL Missense_Mutation p.D149N 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2MC-06 6 41029410 41029410 G A APOBEC2 Missense_Mutation p.E159K 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 6 41165887 41165887 G A TREML2 Silent p.I112I 0.17 TCGA-EE-A2MC-06 6 42152572 42152572 C T GUCA1B Missense_Mutation p.R195Q 0.12 tolerated(0.13) benign(0.014) TCGA-EE-A2MC-06 6 43155482 43155482 C T CUL9 Missense_Mutation p.S538F 0.14 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MC-06 6 43164422 43164422 C T CUL9 Silent p.N875N 0.20 TCGA-EE-A2MC-06 6 47252044 47252044 G A TNFRSF21 Silent p.T291T 0.11 TCGA-EE-A2MC-06 6 54254639 54254639 G A TINAG Silent p.R449R 0.09 TCGA-EE-A2MC-06 6 6225016 6225016 G A F13A1 Silent p.A292A 0.20 TCGA-EE-A2MC-06 6 6225075 6225075 C T F13A1 Missense_Mutation p.E273K 0.17 tolerated(0.42) benign(0.106) TCGA-EE-A2MC-06 6 62604713 62604713 G C KHDRBS2 Missense_Mutation p.P213A 0.08 tolerated(0.13) benign(0.272) TCGA-EE-A2MC-06 6 71269565 71269565 G C FAM135A Missense_Mutation p.D1497H 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 6 73108726 73108726 G A RIMS1 Missense_Mutation p.R1597Q 0.30 deleterious(0) benign(0.335) TCGA-EE-A2MC-06 6 75890817 75890817 C T COL12A1 Missense_Mutation p.E668K 0.20 benign(0.142) TCGA-EE-A2MC-06 6 84798852 84798852 T G MRAP2 Missense_Mutation p.F90L 0.12 tolerated(0.14) probably_damaging(0.987) TCGA-EE-A2MC-06 6 87725844 87725844 G A HTR1E Silent p.R264R 0.09 TCGA-EE-A2MC-06 6 90421914 90421914 G A MDN1 Silent p.L2498L 0.23 TCGA-EE-A2MC-06 6 90718397 90718397 G A BACH2 Missense_Mutation p.A56V 0.13 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MC-06 6 93956528 93956528 G A EPHA7 Missense_Mutation p.P903L 0.22 tolerated(0.81) benign(0.096) TCGA-EE-A2MC-06 6 96651190 96651190 C T FUT9 Silent p.F53F 0.17 TCGA-EE-A2MC-06 6 97561827 97561827 G A KLHL32 Missense_Mutation p.E266K 0.15 tolerated(0.29) benign(0.008) TCGA-EE-A2MC-06 7 100187601 100187601 T G FBXO24 Missense_Mutation p.V52G 0.17 deleterious_low_confidence(0.01) benign(0.307) TCGA-EE-A2MC-06 7 100320727 100320727 G A EPO Missense_Mutation p.G185R 0.11 tolerated(0.19) possibly_damaging(0.707) TCGA-EE-A2MC-06 7 100683757 100683757 T G MUC17 Silent p.T3020T 0.22 TCGA-EE-A2MC-06 7 102953242 102953242 T C PMPCB 3'UTR 0.38 TCGA-EE-A2MC-06 7 106797452 106797452 C T PRKAR2B Silent p.F314F 0.19 TCGA-EE-A2MC-06 7 107314718 107314718 G A SLC26A4 Missense_Mutation p.M175I 0.17 tolerated(0.46) benign(0) TCGA-EE-A2MC-06 7 123097526 123097526 C T IQUB Nonsense_Mutation p.W701* 0.14 TCGA-EE-A2MC-06 7 129091522 129091522 C T STRIP2 Missense_Mutation p.R115W 0.17 deleterious(0.02) possibly_damaging(0.849) TCGA-EE-A2MC-06 7 129691111 129691111 G A ZC3HC1 Silent p.I32I 0.15 TCGA-EE-A2MC-06 7 131825389 131825389 C T PLXNA4 Missense_Mutation p.D1803N 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 7 141618934 141618934 C T OR9A4 Missense_Mutation p.P87S 0.24 tolerated(1) benign(0.02) TCGA-EE-A2MC-06 7 141619575 141619575 C T OR9A4 Silent p.A300A 0.16 TCGA-EE-A2MC-06 7 141635657 141635657 C T CLEC5A Missense_Mutation p.G101E 0.14 tolerated(1) benign(0.001) TCGA-EE-A2MC-06 7 141758047 141758047 C T MGAM Silent p.F1246F 0.18 TCGA-EE-A2MC-06 7 141760126 141760126 C T MGAM Missense_Mutation p.P1359S 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MC-06 7 142099699 142099699 C T TRBV7-8 Missense_Mutation p.G35R 0.15 tolerated(0.07) possibly_damaging(0.766) TCGA-EE-A2MC-06 7 142364705 142364705 G A TRBV24-1 Missense_Mutation p.D114N 0.17 tolerated(0.14) benign(0.117) TCGA-EE-A2MC-06 7 142457353 142457353 C T PRSS1 Silent p.I6I 0.19 TCGA-EE-A2MC-06 7 142459787 142459787 C T PRSS1 Silent p.A121A 0.18 TCGA-EE-A2MC-06 7 142499093 142499093 G A TRBC2 Missense_Mutation p.E124K 0.07 tolerated(0.14) benign(0.31) TCGA-EE-A2MC-06 7 142510322 142510322 G A TRBV30 Missense_Mutation p.S95F 0.29 deleterious(0.02) possibly_damaging(0.837) TCGA-EE-A2MC-06 7 143701563 143701563 G A OR6B1 Silent p.A158A 0.19 TCGA-EE-A2MC-06 7 143806795 143806795 G A OR2A2 Silent p.G40G 0.15 TCGA-EE-A2MC-06 7 146805262 146805262 G A CNTNAP2 Missense_Mutation p.G192S 0.18 deleterious(0.03) probably_damaging(0.927) TCGA-EE-A2MC-06 7 147600733 147600733 C T CNTNAP2 Silent p.I725I 0.19 TCGA-EE-A2MC-06 7 148767963 148767963 G A ZNF786 Missense_Mutation p.A634V 0.20 tolerated(0.09) probably_damaging(0.983) TCGA-EE-A2MC-06 7 150217156 150217156 G A GIMAP7 Missense_Mutation p.E32K 0.21 tolerated(1) benign(0.004) TCGA-EE-A2MC-06 7 150417521 150417521 C T GIMAP1 Silent p.V143V 0.21 TCGA-EE-A2MC-06 7 150645619 150645619 G A KCNH2 Missense_Mutation p.P869S 0.13 tolerated(0.29) benign(0.093) TCGA-EE-A2MC-06 7 18688140 18688140 C T HDAC9 Missense_Mutation p.S434L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 7 20418903 20418903 G A ITGB8 Silent p.R206R 0.22 TCGA-EE-A2MC-06 7 31918645 31918645 A G PDE1C Missense_Mutation p.I190T 0.17 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MC-06 7 34118710 34118710 G A BMPER Nonsense_Mutation p.W440* 0.21 TCGA-EE-A2MC-06 7 35131475 35131475 C T DPY19L2P1 RNA 0.19 TCGA-EE-A2MC-06 7 37382325 37382325 G A ELMO1 5'UTR 0.22 TCGA-EE-A2MC-06 7 37927934 37927934 G A NME8 Missense_Mutation p.D435N 0.23 tolerated(0.23) benign(0.052) TCGA-EE-A2MC-06 7 42004227 42004227 G A GLI3 Missense_Mutation p.P1482S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MC-06 7 44578788 44578788 G A NPC1L1 Missense_Mutation p.P403L 0.12 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MC-06 7 48411914 48411914 C T ABCA13 Silent p.F3651F 0.18 TCGA-EE-A2MC-06 7 48550793 48550793 C T ABCA13 Silent p.F4546F 0.16 TCGA-EE-A2MC-06 7 53104265 53104265 C T POM121L12 3'UTR 0.10 TCGA-EE-A2MC-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.27 TCGA-EE-A2MC-06 7 5680976 5680976 T A RNF216 Nonsense_Mutation p.K731* 0.15 TCGA-EE-A2MC-06 7 73245833 73245833 G A CLDN4 Missense_Mutation p.G101E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 7 74211432 74211432 G A GTF2IRD2 Missense_Mutation p.P807S 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MC-06 7 77549657 77549657 C T PHTF2 Missense_Mutation p.L246F 0.17 tolerated(0.24) benign(0.028) TCGA-EE-A2MC-06 7 82582184 82582184 G A PCLO Silent p.S2695S 0.17 TCGA-EE-A2MC-06 7 82583827 82583827 C T PCLO Missense_Mutation p.D2148N 0.09 unknown(0) TCGA-EE-A2MC-06 7 82585599 82585599 C T PCLO Missense_Mutation p.R1557Q 0.16 unknown(0) TCGA-EE-A2MC-06 7 84702398 84702398 C T SEMA3D Splice_Site p.X126_splice 0.20 TCGA-EE-A2MC-06 7 86468214 86468214 G A GRM3 Missense_Mutation p.G462R 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MC-06 7 86493639 86493639 G A GRM3 Missense_Mutation p.E870K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-EE-A2MC-06 7 86794346 86794346 T C DMTF1 Missense_Mutation p.I30T 0.21 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-EE-A2MC-06 7 87280199 87280199 G A RUNDC3B Missense_Mutation p.E62K 0.21 deleterious(0.02) benign(0.164) TCGA-EE-A2MC-06 7 91691662 91691662 C T AKAP9 Missense_Mutation p.R1947C 0.17 probably_damaging(0.927) TCGA-EE-A2MC-06 7 92731372 92731372 G A SAMD9 Missense_Mutation p.L1347F 0.14 deleterious(0) probably_damaging(0.964) TCGA-EE-A2MC-06 7 98254422 98254422 G A NPTX2 Missense_Mutation p.E278K 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 7 99063767 99063767 T C ATP5J2 5'UTR 0.27 TCGA-EE-A2MC-06 8 100831746 100831746 G T VPS13B Nonsense_Mutation p.E2935* 0.20 TCGA-EE-A2MC-06 8 10466676 10466676 C T RP1L1 Silent p.G1644G 0.14 TCGA-EE-A2MC-06 8 10468112 10468112 C T RP1L1 Missense_Mutation p.D1166N 0.22 benign(0.29) TCGA-EE-A2MC-06 8 106813400 106813400 C T ZFPM2 Nonsense_Mutation p.R364* 0.14 TCGA-EE-A2MC-06 8 109001381 109001381 G A RSPO2 Silent p.F62F 0.13 TCGA-EE-A2MC-06 8 113420569 113420569 C T CSMD3 Silent p.K1861K 0.15 TCGA-EE-A2MC-06 8 11407735 11407735 G A BLK Missense_Mutation p.G146S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 8 11606439 11606439 G A GATA4 Missense_Mutation p.D210N 0.18 deleterious(0) benign(0.043) TCGA-EE-A2MC-06 8 119593089 119593089 G A SAMD12 Silent p.A19A 0.15 TCGA-EE-A2MC-06 8 14181710 14181710 C T SGCZ Missense_Mutation p.G80S 0.19 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MC-06 8 142165978 142165978 G A DENND3 Missense_Mutation p.D289N 0.16 deleterious(0.05) probably_damaging(0.914) TCGA-EE-A2MC-06 8 143784711 143784711 G T LY6K Missense_Mutation p.M140I 0.15 tolerated(0.38) benign(0) TCGA-EE-A2MC-06 8 143784712 143784712 G A LY6K Missense_Mutation p.G141S 0.15 tolerated(1) benign(0.007) TCGA-EE-A2MC-06 8 143832508 143832508 C T LYPD2 Missense_Mutation p.E47K 0.17 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A2MC-06 8 145999437 145999437 C G ZNF34 Missense_Mutation p.R299S 0.21 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MC-06 8 17830107 17830107 A G PCM1 Missense_Mutation p.Q1285R 0.15 tolerated(0.07) possibly_damaging(0.506) TCGA-EE-A2MC-06 8 21848334 21848334 T C XPO7 Missense_Mutation p.S649P 0.14 tolerated(1) benign(0) TCGA-EE-A2MC-06 8 22107734 22107734 C T POLR3D Silent p.F356F 0.14 TCGA-EE-A2MC-06 8 22473054 22473054 C T CCAR2 Missense_Mutation p.A441V 0.12 tolerated(0.09) possibly_damaging(0.473) TCGA-EE-A2MC-06 8 22473055 22473055 C T CCAR2 Silent p.A441A 0.12 TCGA-EE-A2MC-06 8 23117739 23117739 C A CHMP7 Missense_Mutation p.N401K 0.19 tolerated(0.2) benign(0.016) TCGA-EE-A2MC-06 8 25708118 25708118 C T EBF2 Missense_Mutation p.G563E 0.16 deleterious_low_confidence(0) benign(0.188) TCGA-EE-A2MC-06 8 26365392 26365392 G A PNMA2 Missense_Mutation p.R294C 0.15 deleterious(0.04) benign(0.011) TCGA-EE-A2MC-06 8 27516292 27516292 T G SCARA3 Missense_Mutation p.L202R 0.19 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MC-06 8 27927076 27927076 C T NUGGC Missense_Mutation p.G81E 0.19 tolerated(0.17) benign(0.191) TCGA-EE-A2MC-06 8 27927077 27927077 C T NUGGC Missense_Mutation p.G81R 0.19 deleterious(0.04) possibly_damaging(0.846) TCGA-EE-A2MC-06 8 3045479 3045479 C T CSMD1 Silent p.V1844V 0.12 TCGA-EE-A2MC-06 8 3046514 3046514 G A CSMD1 Silent p.F1806F 0.25 TCGA-EE-A2MC-06 8 30706271 30706271 G A TEX15 Missense_Mutation p.S88L 0.12 tolerated(0.27) possibly_damaging(0.452) TCGA-EE-A2MC-06 8 3265455 3265455 G A CSMD1 Silent p.S679S 0.16 TCGA-EE-A2MC-06 8 33342733 33342733 G A MAK16 Silent p.S3S 0.24 TCGA-EE-A2MC-06 8 36793081 36793081 T C KCNU1 Silent p.D1031D 0.19 TCGA-EE-A2MC-06 8 37968341 37968341 C T ASH2L Missense_Mutation p.S192F 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MC-06 8 38282033 38282033 G A FGFR1 Silent p.I341I 0.14 TCGA-EE-A2MC-06 8 39468211 39468211 C T ADAM18 Missense_Mutation p.P170S 0.14 tolerated(0.4) benign(0.014) TCGA-EE-A2MC-06 8 39502882 39502882 G A ADAM18 Missense_Mutation p.G312E 0.16 deleterious(0.04) possibly_damaging(0.811) TCGA-EE-A2MC-06 8 39776385 39776385 G A IDO1 Missense_Mutation p.E119K 0.19 tolerated(0.06) benign(0.001) TCGA-EE-A2MC-06 8 41547801 41547801 C T ANK1 Missense_Mutation p.E1391K 0.18 tolerated(0.48) benign(0.077) TCGA-EE-A2MC-06 8 53038684 53038684 G A ST18 Missense_Mutation p.L895F 0.10 tolerated(0.15) probably_damaging(0.986) TCGA-EE-A2MC-06 8 53077726 53077726 G A ST18 Missense_Mutation p.H422Y 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 8 53084844 53084844 C T ST18 Missense_Mutation p.E193K 0.10 deleterious(0) benign(0.283) TCGA-EE-A2MC-06 8 54730003 54730003 G A ATP6V1H Missense_Mutation p.R132C 0.16 deleterious(0) probably_damaging(0.91) TCGA-EE-A2MC-06 8 55538031 55538031 C T RP1 Missense_Mutation p.S530L 0.29 tolerated(0.05) benign(0.033) TCGA-EE-A2MC-06 8 57354009 57354009 C T PENK Missense_Mutation p.R209Q 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 8 62212642 62212642 C T CLVS1 Missense_Mutation p.H86Y 0.16 deleterious(0.02) benign(0.407) TCGA-EE-A2MC-06 8 77761794 77761794 G A ZFHX4 Missense_Mutation p.R1231H 0.14 possibly_damaging(0.715) TCGA-EE-A2MC-06 8 79510760 79510760 C T PKIA Silent p.I47I 0.15 TCGA-EE-A2MC-06 8 87755845 87755845 G A CNGB3 Missense_Mutation p.S4L 0.21 deleterious_low_confidence(0.01) benign(0.004) TCGA-EE-A2MC-06 8 88249161 88249161 G A CNBD1 Missense_Mutation p.G198R 0.23 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MC-06 8 89053914 89053914 A C MMP16 Missense_Mutation p.D533E 0.22 tolerated(0.51) benign(0.004) TCGA-EE-A2MC-06 8 91090658 91090658 C T CALB1 Missense_Mutation p.M58I 0.12 tolerated(0.16) benign(0.029) TCGA-EE-A2MC-06 8 93017322 93017322 C T RUNX1T1 Intron 0.19 TCGA-EE-A2MC-06 8 93023298 93023298 C T RUNX1T1 Missense_Mutation p.E175K 0.14 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A2MC-06 9 101125068 101125068 C T GABBR2 Missense_Mutation p.D608N 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 9 101258747 101258747 G A GABBR2 Missense_Mutation p.S227L 0.12 tolerated(0.34) benign(0.057) TCGA-EE-A2MC-06 9 101911611 101911611 C T TGFBR1 3'UTR 0.09 TCGA-EE-A2MC-06 9 104079760 104079760 G A LPPR1 Silent p.L309L 0.18 TCGA-EE-A2MC-06 9 107380371 107380371 G A OR13C9 Missense_Mutation p.L39F 0.11 deleterious(0) benign(0.059) TCGA-EE-A2MC-06 9 117106021 117106021 G A AKNA Missense_Mutation p.P1242S 0.24 tolerated(0.28) benign(0.003) TCGA-EE-A2MC-06 9 118949433 118949433 G A PAPPA Missense_Mutation p.G139E 0.22 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MC-06 9 120470847 120470847 C T TLR4 Missense_Mutation p.P34S 0.23 deleterious(0.02) benign(0.052) TCGA-EE-A2MC-06 9 120475079 120475079 G A TLR4 Missense_Mutation p.E225K 0.17 tolerated(0.74) benign(0.003) TCGA-EE-A2MC-06 9 121976369 121976369 G A BRINP1 Silent p.I250I 0.19 TCGA-EE-A2MC-06 9 122075489 122075489 G A BRINP1 Missense_Mutation p.H49Y 0.27 tolerated(0.05) probably_damaging(0.932) TCGA-EE-A2MC-06 9 125315479 125315479 G A OR1N2 Missense_Mutation p.E11K 0.27 tolerated_low_confidence(0.71) benign(0) TCGA-EE-A2MC-06 9 13106996 13106996 T C MPDZ Missense_Mutation p.K2032E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 9 134350720 134350720 C T PRRC2B Silent p.G1068G 0.11 TCGA-EE-A2MC-06 9 136550345 136550345 G A SARDH Silent p.T711T 0.18 TCGA-EE-A2MC-06 9 138518016 138518016 G A GLT6D1 Silent p.L52L 0.16 TCGA-EE-A2MC-06 9 139306961 139306961 G A PMPCA Silent p.S98S 0.12 TCGA-EE-A2MC-06 9 140851251 140851251 G A CACNA1B Silent p.R405R 0.17 TCGA-EE-A2MC-06 9 173359 173359 C G CBWD1 Silent p.A83A 0.18 TCGA-EE-A2MC-06 9 17791249 17791249 C T SH3GL2 Silent p.L215L 0.09 TCGA-EE-A2MC-06 9 22451987 22451987 C T DMRTA1 3'UTR 0.18 TCGA-EE-A2MC-06 9 27949742 27949742 G A LINGO2 Missense_Mutation p.R310C 0.17 deleterious(0.05) possibly_damaging(0.471) TCGA-EE-A2MC-06 9 32634401 32634401 C T TAF1L Missense_Mutation p.E393K 0.18 tolerated(0.45) benign(0.06) TCGA-EE-A2MC-06 9 33264946 33264946 G A CHMP5 5'UTR 0.23 TCGA-EE-A2MC-06 9 35236569 35236569 C T UNC13B Missense_Mutation p.R86C 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.75) TCGA-EE-A2MC-06 9 35749253 35749253 G A RGP1 5'Flank 0.23 TCGA-EE-A2MC-06 9 35826156 35826156 C T FAM221B Translation_Start_Site p.M1? 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MC-06 9 37744484 37744484 G A FRMPD1 Missense_Mutation p.G819R 0.28 tolerated(0.11) benign(0.007) TCGA-EE-A2MC-06 9 441916 441916 C T DOCK8 Silent p.F1799F 0.20 TCGA-EE-A2MC-06 9 69424032 69424032 C T ANKRD20A4 Silent p.F776F 0.34 TCGA-EE-A2MC-06 9 72082853 72082853 G A APBA1 Silent p.I456I 0.24 TCGA-EE-A2MC-06 9 77257548 77257548 T G RORB Missense_Mutation p.S152A 0.17 tolerated(1) benign(0) TCGA-EE-A2MC-06 9 77275589 77275589 G A RORB Missense_Mutation p.E232K 0.13 deleterious(0) benign(0.337) TCGA-EE-A2MC-06 9 79325624 79325624 G A PRUNE2 Silent p.F522F 0.19 TCGA-EE-A2MC-06 9 8518269 8518269 C T PTPRD Silent p.A374A 0.14 TCGA-EE-A2MC-06 9 86383828 86383828 C T GKAP1 Missense_Mutation p.D215N 0.18 tolerated(0.08) possibly_damaging(0.675) TCGA-EE-A2MC-06 9 88650316 88650316 C T GOLM1 Missense_Mutation p.G328R 0.22 tolerated(0.14) probably_damaging(0.991) TCGA-EE-A2MC-06 9 90502479 90502479 G A SPATA31E1 Nonsense_Mutation p.W1026* 0.25 TCGA-EE-A2MC-06 9 96030989 96030989 C A WNK2 Missense_Mutation p.P1332T 0.32 unknown(0) TCGA-EE-A2MC-06 9 96030990 96030990 C A WNK2 Missense_Mutation p.P1332Q 0.27 unknown(0) TCGA-EE-A2MC-06 9 990637 990637 C T DMRT3 Missense_Mutation p.P351S 0.16 deleterious_low_confidence(0.04) probably_damaging(0.968) TCGA-EE-A2MC-06 X 102974111 102974111 G A GLRA4 Silent p.I269I 0.40 TCGA-EE-A2MC-06 X 106116850 106116850 C T TBC1D8B Silent p.D1006D 0.21 TCGA-EE-A2MC-06 X 106845751 106845751 C T FRMPD3 Silent p.I1527I 0.33 TCGA-EE-A2MC-06 X 107842027 107842027 C T COL4A5 Silent p.F625F 0.47 TCGA-EE-A2MC-06 X 108785971 108785971 T A NXT2 3'UTR 0.36 TCGA-EE-A2MC-06 X 110494857 110494857 G A CAPN6 Silent p.V271V 0.36 TCGA-EE-A2MC-06 X 117043590 117043590 C T KLHL13 Missense_Mutation p.G350E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 X 119504679 119504679 G A ATP1B4 Silent p.T146T 0.37 TCGA-EE-A2MC-06 X 123657419 123657419 G A TENM1 Missense_Mutation p.P943L 0.54 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MC-06 X 123805563 123805563 C T TENM1 Missense_Mutation p.G380R 0.49 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MC-06 X 12904184 12904184 G A TLR7 Missense_Mutation p.R186Q 0.33 tolerated(0.15) probably_damaging(0.987) TCGA-EE-A2MC-06 X 130419974 130419974 G A IGSF1 Missense_Mutation p.A49V 0.30 tolerated(0.16) benign(0.341) TCGA-EE-A2MC-06 X 131348174 131348174 G A RAP2C 3'UTR 0.30 TCGA-EE-A2MC-06 X 132160265 132160265 C T USP26 Missense_Mutation p.E662K 0.41 tolerated(0.57) benign(0.318) TCGA-EE-A2MC-06 X 1325440 1325440 C T CRLF2 Missense_Mutation p.G79S 0.15 tolerated(0.17) possibly_damaging(0.821) TCGA-EE-A2MC-06 X 133700464 133700464 C T PLAC1 Silent p.R83R 0.45 TCGA-EE-A2MC-06 X 1467418 1467418 G A IL3RA Nonsense_Mutation p.W93* 0.20 TCGA-EE-A2MC-06 X 148037328 148037328 G A AFF2 Missense_Mutation p.E585K 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MC-06 X 14863068 14863068 G A FANCB Missense_Mutation p.R613C 0.45 tolerated(0.07) benign(0.016) TCGA-EE-A2MC-06 X 150909266 150909266 G A CNGA2 Silent p.K125K 0.37 TCGA-EE-A2MC-06 X 151092868 151092868 G A MAGEA4 Silent p.R244R 0.35 TCGA-EE-A2MC-06 X 151128324 151128324 G A GABRE Silent p.I257I 0.47 TCGA-EE-A2MC-06 X 151128326 151128326 T A GABRE Missense_Mutation p.I257F 0.47 deleterious(0.01) benign(0.42) TCGA-EE-A2MC-06 X 151560764 151560764 G A GABRA3 Intron 0.28 TCGA-EE-A2MC-06 X 15646090 15646090 C T TMEM27 3'UTR 0.33 TCGA-EE-A2MC-06 X 16669137 16669148 CTAAAAAGTCTC - S100G In_Frame_Del p.K4_P7del 0.28 TCGA-EE-A2MC-06 X 17818499 17818499 C T RAI2 3'UTR 0.44 TCGA-EE-A2MC-06 X 3227829 3227829 G A MXRA5 Silent p.A2805A 0.33 TCGA-EE-A2MC-06 X 3228250 3228250 C T MXRA5 Missense_Mutation p.G2665E 0.42 tolerated(1) benign(0.027) TCGA-EE-A2MC-06 X 50052722 50052722 C T CCNB3 Missense_Mutation p.S518L 0.39 tolerated(0.06) possibly_damaging(0.764) TCGA-EE-A2MC-06 X 71549926 71549926 C T HDAC8 Missense_Mutation p.G371E 0.29 tolerated(0.07) benign(0.008) TCGA-EE-A2MC-06 X 72433461 72433461 G A NAP1L2 Missense_Mutation p.H290Y 0.42 tolerated(0.13) benign(0.019) TCGA-EE-A2MC-06 X 73959290 73959290 C T KIAA2022 Missense_Mutation p.V1501I 0.25 tolerated_low_confidence(0.24) benign(0.126) TCGA-EE-A2MC-06 X 78011344 78011344 C T LPAR4 Silent p.A326A 0.28 TCGA-EE-A2MC-06 X 79286045 79286045 C G TBX22 Missense_Mutation p.S333C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MC-06 X 91090780 91090780 C T PCDH11X Missense_Mutation p.R93C 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MC-06 Y 6948886 6948886 G A TBL1Y Missense_Mutation p.G357R 0.55 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MD-06 10 104126904 104126904 C T GBF1 Silent p.I831I 0.50 TCGA-EE-A2MD-06 10 106918660 106918660 C T SORCS3 Missense_Mutation p.S547F 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MD-06 10 106970983 106970983 G A SORCS3 Missense_Mutation p.G784S 0.21 tolerated(0.05) benign(0.298) TCGA-EE-A2MD-06 10 114200408 114200408 G T ZDHHC6 Silent p.R189R 0.37 TCGA-EE-A2MD-06 10 115527213 115527213 G A PLEKHS1 Missense_Mutation p.E106K 0.38 tolerated(0.34) possibly_damaging(0.81) TCGA-EE-A2MD-06 10 115891749 115891749 G A C10orf118 Missense_Mutation p.S617F 0.41 deleterious(0) possibly_damaging(0.789) TCGA-EE-A2MD-06 10 115985903 115985903 C T TDRD1 Missense_Mutation p.L1035F 0.28 tolerated(0.3) probably_damaging(0.986) TCGA-EE-A2MD-06 10 116606378 116606378 C T FAM160B1 Missense_Mutation p.L487F 0.51 deleterious(0) possibly_damaging(0.737) TCGA-EE-A2MD-06 10 123845785 123845785 C T TACC2 Missense_Mutation p.S1257F 0.43 benign(0.21) TCGA-EE-A2MD-06 10 124271522 124271522 C T HTRA1 Silent p.F405F 0.48 TCGA-EE-A2MD-06 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 10 124459258 124459258 C T C10orf120 Missense_Mutation p.A17T 0.30 tolerated(0.36) benign(0.094) TCGA-EE-A2MD-06 10 124459259 124459259 C T C10orf120 Silent p.R16R 0.30 TCGA-EE-A2MD-06 10 124591942 124591942 T C CUZD1 Missense_Mutation p.E559G 0.42 tolerated(0.11) benign(0.001) TCGA-EE-A2MD-06 10 124671148 124671148 G A FAM24A Splice_Site 0.45 TCGA-EE-A2MD-06 10 125805483 125805483 G A CHST15 Silent p.L82L 0.48 TCGA-EE-A2MD-06 10 13214665 13214665 T G MCM10 Silent p.V165V 0.18 TCGA-EE-A2MD-06 10 13371744 13371744 G A SEPHS1 Missense_Mutation p.P202L 0.38 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A2MD-06 10 135085413 135085413 C T ADAM8 Missense_Mutation p.E335K 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 10 14950820 14950820 C T DCLRE1C Missense_Mutation p.D556N 0.31 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A2MD-06 10 15573138 15573138 G A ITGA8 Missense_Mutation p.P965S 0.25 tolerated(0.84) benign(0.097) TCGA-EE-A2MD-06 10 20453483 20453483 C T PLXDC2 Silent p.I290I 0.44 TCGA-EE-A2MD-06 10 24813486 24813486 C T KIAA1217 Silent p.S897S 0.30 TCGA-EE-A2MD-06 10 25701229 25701229 G A GPR158 Missense_Mutation p.E388K 0.28 tolerated(0.48) benign(0.085) TCGA-EE-A2MD-06 10 26241088 26241088 C T MYO3A Missense_Mutation p.P17S 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 10 28149605 28149605 G A ARMC4 Silent p.L990L 0.27 TCGA-EE-A2MD-06 10 28273152 28273152 C T ARMC4 Missense_Mutation p.G215R 0.28 deleterious(0.02) possibly_damaging(0.781) TCGA-EE-A2MD-06 10 30336469 30336469 C T KIAA1462 Silent p.S91S 0.29 TCGA-EE-A2MD-06 10 37430983 37430983 G A ANKRD30A Silent p.E330E 0.30 TCGA-EE-A2MD-06 10 37451713 37451713 G A ANKRD30A Missense_Mutation p.E591K 0.34 tolerated(0.18) possibly_damaging(0.636) TCGA-EE-A2MD-06 10 37505221 37505221 G A ANKRD30A Silent p.K938K 0.25 TCGA-EE-A2MD-06 10 37506675 37506675 G A ANKRD30A Missense_Mutation p.E990K 0.29 tolerated(0.19) possibly_damaging(0.636) TCGA-EE-A2MD-06 10 37508190 37508190 G A ANKRD30A Missense_Mutation p.E1128K 0.27 deleterious(0.01) possibly_damaging(0.636) TCGA-EE-A2MD-06 10 45644352 45644352 C T RP11-445N18.7 RNA 0.39 TCGA-EE-A2MD-06 10 48370860 48370860 G A ZNF488 Missense_Mutation p.D110N 0.50 deleterious(0.01) benign(0.143) TCGA-EE-A2MD-06 10 50121384 50121384 C T LRRC18 Intron 0.34 TCGA-EE-A2MD-06 10 5014477 5014477 C T AKR1C1 Silent p.L219L 0.30 TCGA-EE-A2MD-06 10 50532109 50532109 C T C10orf71 Missense_Mutation p.R507W 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 10 50594600 50594600 G A DRGX Silent p.F155F 0.67 TCGA-EE-A2MD-06 10 50828588 50828588 C T CHAT Silent p.A209A 0.47 TCGA-EE-A2MD-06 10 50959906 50959906 C T OGDHL Missense_Mutation p.R239Q 0.45 deleterious(0.03) benign(0.158) TCGA-EE-A2MD-06 10 5141525 5141525 G A AKR1C3 Missense_Mutation p.E152K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 10 55568613 55568613 C T PCDH15 Missense_Mutation p.E667K 0.54 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MD-06 10 55582522 55582522 G A PCDH15 Missense_Mutation p.S1657F 0.46 deleterious_low_confidence(0) benign(0.379) TCGA-EE-A2MD-06 10 5925946 5925946 G A ANKRD16 Missense_Mutation p.L225F 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2MD-06 10 61029827 61029827 C T FAM13C Missense_Mutation p.S212N 0.51 tolerated(0.17) benign(0.012) TCGA-EE-A2MD-06 10 61833876 61833876 G A ANK3 Missense_Mutation p.H2255Y 0.38 benign(0.043) TCGA-EE-A2MD-06 10 61898789 61898789 C T ANK3 Missense_Mutation p.E891K 0.40 benign(0.298) TCGA-EE-A2MD-06 10 6483980 6483980 C T PRKCQ Missense_Mutation p.E571K 0.20 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 10 70161453 70161453 G A RUFY2 Missense_Mutation p.P109S 0.51 deleterious(0.03) probably_damaging(0.909) TCGA-EE-A2MD-06 10 72358237 72358237 G A PRF1 Silent p.L414L 0.80 TCGA-EE-A2MD-06 10 72520571 72520571 C T ADAMTS14 Missense_Mutation p.P1215S 0.56 tolerated_low_confidence(0.2) benign(0.017) TCGA-EE-A2MD-06 10 72633179 72633179 C T SGPL1 Silent p.F377F 0.45 TCGA-EE-A2MD-06 10 73121932 73121932 C T SLC29A3 Missense_Mutation p.S332F 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 10 74631160 74631160 C T MCU Missense_Mutation p.A228V 0.45 tolerated(0.05) possibly_damaging(0.775) TCGA-EE-A2MD-06 10 75854043 75854043 C T VCL Missense_Mutation p.S456F 0.53 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2MD-06 10 7608105 7608105 G A ITIH5 Silent p.A805A 0.23 TCGA-EE-A2MD-06 10 76790158 76790158 T A KAT6B Missense_Mutation p.V1859D 0.50 probably_damaging(0.997) TCGA-EE-A2MD-06 10 7745462 7745462 C T ITIH2 Missense_Mutation p.P22L 0.24 tolerated_low_confidence(0.88) benign(0.005) TCGA-EE-A2MD-06 10 7763687 7763687 G A ITIH2 Missense_Mutation p.E272K 0.30 tolerated(0.06) benign(0.071) TCGA-EE-A2MD-06 10 8093113 8093113 G A GATA3 5'Flank 0.41 TCGA-EE-A2MD-06 10 8115931 8115931 C T GATA3 Missense_Mutation p.S427F 0.32 tolerated(0.05) possibly_damaging(0.802) TCGA-EE-A2MD-06 10 81850607 81850607 C T TMEM254 Silent p.F102F 0.39 TCGA-EE-A2MD-06 10 858835 858835 C T LARP4B 3'UTR 0.27 TCGA-EE-A2MD-06 10 90362355 90362355 C T LIPJ Missense_Mutation p.S249L 0.55 deleterious(0.01) benign(0.335) TCGA-EE-A2MD-06 10 91143846 91143846 A G IFIT1B Missense_Mutation p.K259R 0.41 deleterious(0.04) benign(0.111) TCGA-EE-A2MD-06 10 94291658 94291658 G A IDE Silent p.L170L 0.48 TCGA-EE-A2MD-06 10 95454674 95454674 G A FRA10AC1 Silent p.F80F 0.39 TCGA-EE-A2MD-06 10 96084175 96084175 G A PLCE1 Missense_Mutation p.E2191K 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 10 96493144 96493144 G A CYP2C18 Missense_Mutation p.D414N 0.42 tolerated(0.28) possibly_damaging(0.512) TCGA-EE-A2MD-06 10 96826976 96826976 C T CYP2C8 Missense_Mutation p.R157K 0.48 tolerated(0.23) benign(0.03) TCGA-EE-A2MD-06 10 96829085 96829085 C T CYP2C8 Silent p.R25R 0.56 TCGA-EE-A2MD-06 10 97097047 97097047 G A SORBS1 Missense_Mutation p.S957F 0.58 deleterious_low_confidence(0.02) benign(0.008) TCGA-EE-A2MD-06 10 98205860 98205860 C T TLL2 Missense_Mutation p.E118K 0.46 tolerated(0.68) benign(0.001) TCGA-EE-A2MD-06 10 98742252 98742252 G A C10orf12 Missense_Mutation p.G369R 0.38 tolerated(0.35) benign(0.024) TCGA-EE-A2MD-06 11 10516551 10516551 G A AMPD3 Missense_Mutation p.G423R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 11 106558458 106558458 G A GUCY1A2 Silent p.F703F 0.43 TCGA-EE-A2MD-06 11 10797129 10797129 C T CTR9 Missense_Mutation p.S1015L 0.29 deleterious(0) benign(0.307) TCGA-EE-A2MD-06 11 113270613 113270613 T A ANKK1 Missense_Mutation p.V641E 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 11 113286233 113286233 C T DRD2 Silent p.K211K 0.43 TCGA-EE-A2MD-06 11 113672276 113672276 G A USP28 Missense_Mutation p.S996F 0.45 deleterious(0) probably_damaging(0.91) TCGA-EE-A2MD-06 11 116728595 116728595 C A SIK3 Nonsense_Mutation p.E1090* 0.47 TCGA-EE-A2MD-06 11 118252157 118252157 C T UBE4A Missense_Mutation p.A650V 0.48 tolerated(0.12) benign(0.302) TCGA-EE-A2MD-06 11 121061414 121061414 G A TECTA Splice_Site p.X2123_splice 0.38 TCGA-EE-A2MD-06 11 121492969 121492969 G A SORL1 Missense_Mutation p.E2055K 0.41 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A2MD-06 11 12313711 12313711 G A MICALCL 5'UTR 0.30 TCGA-EE-A2MD-06 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.41 tolerated(1) benign(0) TCGA-EE-A2MD-06 11 124757690 124757690 G A ROBO4 Silent p.S665S 0.41 TCGA-EE-A2MD-06 11 125889518 125889518 G A CDON Silent p.S164S 0.40 TCGA-EE-A2MD-06 11 14101558 14101558 G A SPON1 RNA 0.28 TCGA-EE-A2MD-06 11 14276093 14276093 G A SPON1 RNA 0.33 TCGA-EE-A2MD-06 11 15257208 15257208 G A INSC Missense_Mutation p.E458K 0.41 tolerated(0.27) possibly_damaging(0.466) TCGA-EE-A2MD-06 11 1642863 1642863 G A KRTAP5-4 Missense_Mutation p.S154F 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MD-06 11 17190814 17190814 G A PIK3C2A Missense_Mutation p.P159S 0.31 tolerated_low_confidence(0.19) benign(0.031) TCGA-EE-A2MD-06 11 17794027 17794027 G A KCNC1 Silent p.R462R 0.25 TCGA-EE-A2MD-06 11 18194976 18194976 G A MRGPRX4 Missense_Mutation p.R58K 0.28 tolerated(0.09) benign(0.209) TCGA-EE-A2MD-06 11 19077592 19077592 G A MRGPRX2 Silent p.L120L 0.23 TCGA-EE-A2MD-06 11 19077940 19077940 T C MRGPRX2 Missense_Mutation p.T4A 0.26 tolerated(0.05) benign(0.411) TCGA-EE-A2MD-06 11 1956059 1956059 G A TNNT3 Silent p.R197R 0.27 TCGA-EE-A2MD-06 11 20648311 20648311 G A SLC6A5 Missense_Mutation p.G440R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 11 21556021 21556021 G A NELL1 Missense_Mutation p.D583N 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MD-06 11 22283727 22283727 C T ANO5 Silent p.F561F 0.34 TCGA-EE-A2MD-06 11 2339110 2339110 C T TSPAN32 Missense_Mutation p.R307C 0.32 deleterious_low_confidence(0.04) benign(0.016) TCGA-EE-A2MD-06 11 2591881 2591881 C T KCNQ1 Silent p.F167F 0.33 TCGA-EE-A2MD-06 11 26586820 26586820 C T MUC15 Missense_Mutation p.D223N 0.36 tolerated(0.05) benign(0.198) TCGA-EE-A2MD-06 11 30032434 30032434 G A KCNA4 Missense_Mutation p.R598W 0.27 deleterious(0) probably_damaging(0.913) TCGA-EE-A2MD-06 11 3047965 3047965 G A CARS Missense_Mutation p.S365F 0.25 tolerated(0.76) benign(0.004) TCGA-EE-A2MD-06 11 32124946 32124946 C T RCN1 Missense_Mutation p.R270C 0.31 deleterious(0.01) benign(0.035) TCGA-EE-A2MD-06 11 3249748 3249748 G A MRGPRE Silent p.F93F 0.19 TCGA-EE-A2MD-06 11 32674768 32674768 G A CCDC73 Silent p.I280I 0.32 TCGA-EE-A2MD-06 11 380147 380147 G A B4GALNT4 Missense_Mutation p.R887Q 0.30 tolerated(0.25) unknown(0) TCGA-EE-A2MD-06 11 40135976 40135976 C T LRRC4C Missense_Mutation p.E623K 0.33 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-EE-A2MD-06 11 40137358 40137358 C T LRRC4C Missense_Mutation p.S162N 0.23 tolerated(0.05) benign(0.309) TCGA-EE-A2MD-06 11 4388923 4388923 C T OR52B4 Silent p.G201G 0.30 TCGA-EE-A2MD-06 11 45868999 45868999 C T CRY2 Silent p.A7A 0.44 TCGA-EE-A2MD-06 11 46397925 46397925 C T DGKZ Silent p.S901S 0.28 TCGA-EE-A2MD-06 11 46407940 46407940 G A CHRM4 Silent p.S56S 0.47 TCGA-EE-A2MD-06 11 4674639 4674639 G A OR51E1 Missense_Mutation p.G295R 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2MD-06 11 47270236 47270236 G A ACP2 Silent p.F35F 0.29 TCGA-EE-A2MD-06 11 47296350 47296350 C T MADD Missense_Mutation p.S100F 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A2MD-06 11 48238470 48238470 G A OR4B1 Missense_Mutation p.V37M 0.32 tolerated(0.19) benign(0.081) TCGA-EE-A2MD-06 11 48267532 48267532 C T OR4X2 Silent p.L293L 0.24 TCGA-EE-A2MD-06 11 48286288 48286288 G A OR4X1 Silent p.V292V 0.18 TCGA-EE-A2MD-06 11 48327915 48327915 C T OR4S1 Silent p.I47I 0.34 TCGA-EE-A2MD-06 11 4843204 4843204 G A OR51F2 Missense_Mutation p.D197N 0.34 deleterious(0.02) benign(0.137) TCGA-EE-A2MD-06 11 49175467 49175467 G A FOLH1 Missense_Mutation p.S634F 0.25 deleterious(0) benign(0.211) TCGA-EE-A2MD-06 11 49190808 49190808 C T FOLH1 Silent p.E437E 0.30 TCGA-EE-A2MD-06 11 4929315 4929315 C T OR51A7 Missense_Mutation p.T239I 0.28 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A2MD-06 11 4929511 4929511 G A OR51A7 Silent p.G304G 0.25 TCGA-EE-A2MD-06 11 4936891 4936891 C T OR51G2 Translation_Start_Site p.M1? 0.39 tolerated_low_confidence(0.06) unknown(0) TCGA-EE-A2MD-06 11 49974218 49974218 G A OR4C13 Missense_Mutation p.D82N 0.26 deleterious_low_confidence(0.03) benign(0.077) TCGA-EE-A2MD-06 11 50003394 50003394 G A OR4C12 Missense_Mutation p.S215F 0.25 deleterious_low_confidence(0) benign(0.133) TCGA-EE-A2MD-06 11 5021082 5021082 C T OR51L1 Silent p.N290N 0.32 TCGA-EE-A2MD-06 11 5079889 5079889 C T OR52E2 Silent p.T323T 0.28 TCGA-EE-A2MD-06 11 5152977 5152977 G A OR52A5 Missense_Mutation p.T299I 0.23 deleterious(0) benign(0.234) TCGA-EE-A2MD-06 11 5153745 5153745 C T OR52A5 Missense_Mutation p.G43E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 11 5510709 5510709 C T OR52D1 Missense_Mutation p.A258V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 11 55135991 55135991 C T OR4A15 Missense_Mutation p.P211L 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MD-06 11 55322769 55322769 C T OR4C15 Silent p.I329I 0.44 TCGA-EE-A2MD-06 11 55563901 55563901 G A OR5D14 Silent p.L290L 0.59 TCGA-EE-A2MD-06 11 55659158 55659158 C T TRIM51 3'UTR 0.47 TCGA-EE-A2MD-06 11 55735767 55735767 G A OR10AG1 Missense_Mutation p.S58F 0.32 deleterious(0) possibly_damaging(0.767) TCGA-EE-A2MD-06 11 55761238 55761238 C T OR5F1 Silent p.L288L 0.38 TCGA-EE-A2MD-06 11 55798846 55798846 C T OR5AS1 Missense_Mutation p.R318C 0.38 deleterious(0) benign(0.002) TCGA-EE-A2MD-06 11 55927378 55927378 C T OR8K5 Missense_Mutation p.R139Q 0.48 deleterious_low_confidence(0.03) possibly_damaging(0.841) TCGA-EE-A2MD-06 11 56057731 56057731 C T OR8H1 Missense_Mutation p.D270N 0.39 deleterious(0.03) benign(0.309) TCGA-EE-A2MD-06 11 56085989 56085989 G A OR8K3 Missense_Mutation p.M69I 0.40 tolerated_low_confidence(0.39) benign(0) TCGA-EE-A2MD-06 11 56113937 56113937 C T OR8K1 Silent p.I141I 0.38 TCGA-EE-A2MD-06 11 56310057 56310057 C T OR5M11 Missense_Mutation p.R226Q 0.53 deleterious(0.01) benign(0.127) TCGA-EE-A2MD-06 11 56310629 56310629 G A OR5M11 Silent p.Y35Y 0.45 TCGA-EE-A2MD-06 11 57182185 57182185 G A SLC43A3 Silent p.A321A 0.42 TCGA-EE-A2MD-06 11 5758025 5758025 C T OR56B1 Silent p.I93I 0.18 TCGA-EE-A2MD-06 11 57958068 57958068 C T OR9Q2 Missense_Mutation p.L36F 0.50 tolerated(0.07) benign(0.078) TCGA-EE-A2MD-06 11 58722338 58722338 C T GLYATL1 Silent p.I125I 0.30 TCGA-EE-A2MD-06 11 5878020 5878020 G A OR52E8 Nonsense_Mutation p.R305* 0.31 TCGA-EE-A2MD-06 11 5969065 5969065 C T OR56A3 Silent p.I163I 0.27 TCGA-EE-A2MD-06 11 59942973 59942973 A G MS4A6A Silent p.L179L 0.38 TCGA-EE-A2MD-06 11 6007946 6007946 G A OR52L1 Missense_Mutation p.S72F 0.29 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2MD-06 11 60704083 60704083 G A TMEM132A Missense_Mutation p.E927K 0.31 tolerated(0.4) possibly_damaging(0.648) TCGA-EE-A2MD-06 11 60705472 60705472 G A SLC15A3 Silent p.A487A 0.53 TCGA-EE-A2MD-06 11 61183697 61183697 G A CPSF7 Missense_Mutation p.P325L 0.41 deleterious(0.01) possibly_damaging(0.844) TCGA-EE-A2MD-06 11 62299704 62299704 G A AHNAK Missense_Mutation p.P729S 0.45 possibly_damaging(0.674) TCGA-EE-A2MD-06 11 63141131 63141131 C T SLC22A9 Silent p.F174F 0.46 TCGA-EE-A2MD-06 11 63174092 63174092 G A SLC22A9 Nonsense_Mutation p.W399* 0.45 TCGA-EE-A2MD-06 11 64037604 64037604 G A BAD 3'UTR 0.33 TCGA-EE-A2MD-06 11 64108111 64108111 G A CCDC88B Silent p.A31A 0.50 TCGA-EE-A2MD-06 11 64359170 64359170 C T SLC22A12 Missense_Mutation p.R48C 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MD-06 11 64416209 64416209 C T NRXN2 Missense_Mutation p.D1094N 0.50 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A2MD-06 11 65811142 65811142 G A GAL3ST3 Silent p.P44P 0.64 TCGA-EE-A2MD-06 11 66359695 66359695 G A CCDC87 Silent p.F264F 0.46 TCGA-EE-A2MD-06 11 67174403 67174403 C T TBC1D10C Silent p.L252L 0.42 TCGA-EE-A2MD-06 11 67256782 67256782 C T AIP Silent p.I108I 0.33 TCGA-EE-A2MD-06 11 70333102 70333102 G A SHANK2 Missense_Mutation p.S1100F 0.36 deleterious(0) benign(0.348) TCGA-EE-A2MD-06 11 70333553 70333553 C T SHANK2 Missense_Mutation p.G950R 0.46 deleterious(0.05) benign(0.004) TCGA-EE-A2MD-06 11 723296 723296 C T EPS8L2 Missense_Mutation p.S466L 0.28 tolerated(0.32) benign(0.001) TCGA-EE-A2MD-06 11 7324274 7324274 C G SYT9 Missense_Mutation p.I50M 0.24 deleterious(0) possibly_damaging(0.653) TCGA-EE-A2MD-06 11 78412733 78412733 A G TENM4 Missense_Mutation p.L1642P 0.41 deleterious(0) possibly_damaging(0.61) TCGA-EE-A2MD-06 11 7982828 7982828 C T NLRP10 Missense_Mutation p.E111K 0.25 tolerated(0.08) possibly_damaging(0.851) TCGA-EE-A2MD-06 11 8248592 8248592 C T LMO1 Missense_Mutation p.E99K 0.18 deleterious(0) probably_damaging(0.964) TCGA-EE-A2MD-06 11 82936039 82936039 C T ANKRD42 Silent p.N215N 0.36 TCGA-EE-A2MD-06 11 92085510 92085510 G A FAT3 Missense_Mutation p.D78N 0.44 possibly_damaging(0.58) TCGA-EE-A2MD-06 11 92533014 92533014 G A FAT3 Missense_Mutation p.D2279N 0.42 probably_damaging(1) TCGA-EE-A2MD-06 11 92534702 92534702 G A FAT3 Missense_Mutation p.M2841I 0.47 benign(0.009) TCGA-EE-A2MD-06 11 9534078 9534078 G A ZNF143 Missense_Mutation p.A487T 0.31 tolerated(0.3) benign(0.231) TCGA-EE-A2MD-06 11 993824 993824 C T AP2A2 Silent p.L541L 0.29 TCGA-EE-A2MD-06 11 99827575 99827575 C T CNTN5 Silent p.S237S 0.43 TCGA-EE-A2MD-06 12 100041928 100041928 G A FAM71C 5'UTR 0.30 TCGA-EE-A2MD-06 12 100042121 100042121 G A FAM71C Missense_Mutation p.G57R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 100813746 100813746 G A SLC17A8 Missense_Mutation p.E527K 0.28 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MD-06 12 101581190 101581190 C T SLC5A8 Missense_Mutation p.A313T 0.40 tolerated(0.16) benign(0.119) TCGA-EE-A2MD-06 12 104084258 104084258 C T STAB2 Missense_Mutation p.S1080F 0.41 deleterious(0.01) possibly_damaging(0.837) TCGA-EE-A2MD-06 12 10601878 10601878 C T KLRC1 Silent p.S149S 0.31 TCGA-EE-A2MD-06 12 106632733 106632733 G A CKAP4 3'UTR 0.38 TCGA-EE-A2MD-06 12 10774522 10774522 G A STYK1 Silent p.L339L 0.39 TCGA-EE-A2MD-06 12 108006557 108006557 G A BTBD11 Missense_Mutation p.G604S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 108013935 108013935 G A BTBD11 Silent p.A875A 0.29 TCGA-EE-A2MD-06 12 108985675 108985675 G A TMEM119 Missense_Mutation p.P162L 0.40 deleterious(0.02) possibly_damaging(0.49) TCGA-EE-A2MD-06 12 109182305 109182305 G A SSH1 Missense_Mutation p.P870L 0.29 deleterious_low_confidence(0.03) benign(0.118) TCGA-EE-A2MD-06 12 109210883 109210883 A G SSH1 Missense_Mutation p.V111A 0.30 deleterious(0.02) possibly_damaging(0.698) TCGA-EE-A2MD-06 12 11091063 11091063 G A TAS2R14 Silent p.F248F 0.35 TCGA-EE-A2MD-06 12 111066746 111066746 C T TCTN1 Intron 0.20 TCGA-EE-A2MD-06 12 111321930 111321930 G A CCDC63 Missense_Mutation p.G317E 0.33 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A2MD-06 12 111348965 111348965 G A MYL2 Silent p.F139F 0.27 TCGA-EE-A2MD-06 12 112229871 112229871 C T ALDH2 Missense_Mutation p.R268C 0.16 deleterious(0) benign(0.394) TCGA-EE-A2MD-06 12 112891006 112891006 C T PTPN11 Missense_Mutation p.H114Y 0.23 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MD-06 12 11420818 11420818 C T PRB3 Missense_Mutation p.G122E 0.31 deleterious(0.03) unknown(0) TCGA-EE-A2MD-06 12 11420974 11420974 C T PRB3 Missense_Mutation p.G70D 0.23 deleterious(0) unknown(0) TCGA-EE-A2MD-06 12 11420975 11420975 C T PRB3 Missense_Mutation p.G70S 0.23 deleterious(0.02) unknown(0) TCGA-EE-A2MD-06 12 114261086 114261086 G A RBM19 Silent p.I942I 0.24 TCGA-EE-A2MD-06 12 11546367 11546367 G A PRB2 Silent p.P215P 0.25 TCGA-EE-A2MD-06 12 117155666 117155666 G A C12orf49 Silent p.P189P 0.37 TCGA-EE-A2MD-06 12 117665347 117665347 G A NOS1 Silent p.L1203L 0.34 TCGA-EE-A2MD-06 12 117691472 117691472 A T NOS1 Missense_Mutation p.F907L 0.26 tolerated(0.66) possibly_damaging(0.874) TCGA-EE-A2MD-06 12 117696204 117696204 C T NOS1 Silent p.R843R 0.30 TCGA-EE-A2MD-06 12 118105405 118105405 C T KSR2 Missense_Mutation p.E349K 0.27 deleterious(0.05) benign(0.288) TCGA-EE-A2MD-06 12 120536843 120536843 G A RAB35 Nonsense_Mutation p.R115* 0.34 TCGA-EE-A2MD-06 12 120536844 120536844 G A RAB35 Silent p.C114C 0.35 TCGA-EE-A2MD-06 12 121416709 121416709 G A HNF1A Silent p.K46K 0.30 TCGA-EE-A2MD-06 12 121678463 121678463 G A CAMKK2 3'UTR 0.32 TCGA-EE-A2MD-06 12 122079438 122079438 G A ORAI1 Silent p.K267K 0.22 TCGA-EE-A2MD-06 12 122690864 122690864 G A B3GNT4 Splice_Site p.X23_splice 0.31 TCGA-EE-A2MD-06 12 122690865 122690865 G A B3GNT4 Missense_Mutation p.G23R 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-EE-A2MD-06 12 123273346 123273346 T A CCDC62 Nonsense_Mutation p.C180* 0.25 TCGA-EE-A2MD-06 12 124192218 124192218 C T TCTN2 Silent p.F684F 0.36 TCGA-EE-A2MD-06 12 124350521 124350521 C T DNAH10 Silent p.S2238S 0.27 TCGA-EE-A2MD-06 12 124831144 124831144 G A NCOR2 Missense_Mutation p.A1442V 0.29 benign(0.051) TCGA-EE-A2MD-06 12 125609554 125609554 C T AACS Silent p.L431L 0.25 TCGA-EE-A2MD-06 12 125834329 125834329 C T TMEM132B Silent p.S128S 0.31 TCGA-EE-A2MD-06 12 129442178 129442178 C T GLT1D1 Missense_Mutation p.S210F 0.23 deleterious(0) possibly_damaging(0.683) TCGA-EE-A2MD-06 12 129569278 129569278 G A TMEM132D Intron 0.35 TCGA-EE-A2MD-06 12 13061655 13061655 A G GPRC5A Missense_Mutation p.N158D 0.28 tolerated(0.6) possibly_damaging(0.524) TCGA-EE-A2MD-06 12 133236048 133236048 G C POLE Missense_Mutation p.N1036K 0.21 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2MD-06 12 133393269 133393269 G A GOLGA3 Missense_Mutation p.P88L 0.28 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-EE-A2MD-06 12 13526287 13526287 G A C12orf36 Silent p.L90L 0.31 TCGA-EE-A2MD-06 12 13717313 13717313 G A GRIN2B Silent p.P953P 0.31 TCGA-EE-A2MD-06 12 13761582 13761582 G A GRIN2B Silent p.I655I 0.38 TCGA-EE-A2MD-06 12 16713469 16713469 G A LMO3 Silent p.L92L 0.38 TCGA-EE-A2MD-06 12 18435407 18435407 G A PIK3C2G Missense_Mutation p.G131E 0.31 tolerated_low_confidence(0.54) benign(0.025) TCGA-EE-A2MD-06 12 18852779 18852779 C T PLCZ1 Missense_Mutation p.E375K 0.31 deleterious(0.03) probably_damaging(0.913) TCGA-EE-A2MD-06 12 2019079 2019079 G A CACNA2D4 Missense_Mutation p.S160F 0.23 deleterious(0.01) benign(0.126) TCGA-EE-A2MD-06 12 20799717 20799717 G A PDE3A Missense_Mutation p.G800R 0.22 deleterious(0) benign(0.347) TCGA-EE-A2MD-06 12 20903710 20903710 G A SLCO1C1 Missense_Mutation p.D634N 0.26 tolerated(0.28) benign(0.364) TCGA-EE-A2MD-06 12 21069035 21069035 G A SLCO1B3 Missense_Mutation p.D655N 0.25 tolerated(0.53) benign(0.02) TCGA-EE-A2MD-06 12 21196326 21196326 C T SLCO1B7 Silent p.F215F 0.25 TCGA-EE-A2MD-06 12 21355470 21355470 G A SLCO1B1 Missense_Mutation p.G394E 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 12 21453303 21453303 C T SLCO1A2 Missense_Mutation p.E297K 0.16 tolerated(0.84) benign(0.012) TCGA-EE-A2MD-06 12 21918614 21918614 C T KCNJ8 3'UTR 0.31 TCGA-EE-A2MD-06 12 21918615 21918615 C T KCNJ8 3'UTR 0.31 TCGA-EE-A2MD-06 12 21998642 21998642 C T ABCC9 Missense_Mutation p.M997I 0.41 tolerated(0.44) benign(0.006) TCGA-EE-A2MD-06 12 25148921 25148921 C T C12orf77 Missense_Mutation p.R76Q 0.20 tolerated_low_confidence(0.06) benign(0.016) TCGA-EE-A2MD-06 12 26639045 26639045 C T ITPR2 Missense_Mutation p.E1935K 0.35 tolerated(0.13) benign(0.098) TCGA-EE-A2MD-06 12 26811014 26811014 G A ITPR2 Missense_Mutation p.P646S 0.28 deleterious(0.02) probably_damaging(0.943) TCGA-EE-A2MD-06 12 2714944 2714944 C T CACNA1C Missense_Mutation p.L1070F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 12 27543024 27543024 G A ARNTL2 Intron 0.31 TCGA-EE-A2MD-06 12 32137752 32137752 C T KIAA1551 Missense_Mutation p.P1288L 0.19 deleterious(0.01) benign(0.173) TCGA-EE-A2MD-06 12 3387672 3387672 C T TSPAN9 Missense_Mutation p.S50L 0.30 tolerated(0.05) possibly_damaging(0.537) TCGA-EE-A2MD-06 12 369043 369043 G A SLC6A13 Missense_Mutation p.P59L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 369044 369044 G A SLC6A13 Missense_Mutation p.P59S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 40085867 40085867 G A C12orf40 Missense_Mutation p.G455E 0.34 tolerated(1) benign(0.287) TCGA-EE-A2MD-06 12 41323782 41323782 C T CNTN1 Silent p.I227I 0.32 TCGA-EE-A2MD-06 12 41966907 41966907 A T PDZRN4 Missense_Mutation p.M776L 0.28 tolerated(0.9) benign(0.003) TCGA-EE-A2MD-06 12 43777712 43777712 C T ADAMTS20 Silent p.Q1507Q 0.39 TCGA-EE-A2MD-06 12 43945674 43945674 G A ADAMTS20 Silent p.F17F 0.27 TCGA-EE-A2MD-06 12 44902763 44902763 C T NELL2 Missense_Mutation p.G852D 0.23 deleterious(0) possibly_damaging(0.71) TCGA-EE-A2MD-06 12 45417608 45417608 C T DBX2 Missense_Mutation p.R190K 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MD-06 12 47181746 47181746 G A SLC38A4 Silent p.I93I 0.29 TCGA-EE-A2MD-06 12 47629900 47629900 C T PCED1B Nonsense_Mutation p.Q352* 0.32 TCGA-EE-A2MD-06 12 48723866 48723866 G A H1FNT 3'UTR 0.40 TCGA-EE-A2MD-06 12 4919936 4919936 G A KCNA6 Missense_Mutation p.M243I 0.33 tolerated(0.48) benign(0.001) TCGA-EE-A2MD-06 12 49497573 49497573 C T LMBR1L Silent p.E153E 0.24 TCGA-EE-A2MD-06 12 50037545 50037545 G A FMNL3 3'UTR 0.23 TCGA-EE-A2MD-06 12 5021546 5021546 C T KCNA1 Silent p.F334F 0.22 TCGA-EE-A2MD-06 12 5021586 5021586 G A KCNA1 Missense_Mutation p.E348K 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 50453691 50453691 C T ASIC1 Missense_Mutation p.S171F 0.34 tolerated(0.14) benign(0.029) TCGA-EE-A2MD-06 12 51135318 51135318 G A DIP2B Missense_Mutation p.E1492K 0.31 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MD-06 12 51753032 51753032 G A GALNT6 Missense_Mutation p.P418S 0.25 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A2MD-06 12 51883546 51883546 C T SLC4A8 Silent p.I837I 0.25 TCGA-EE-A2MD-06 12 52200418 52200418 C T SCN8A Silent p.N1716N 0.28 TCGA-EE-A2MD-06 12 52284533 52284533 G A ANKRD33 Missense_Mutation p.G268E 0.33 tolerated(1) benign(0.392) TCGA-EE-A2MD-06 12 52579308 52579308 C T KRT80 Missense_Mutation p.D122N 0.38 tolerated(0.27) benign(0.121) TCGA-EE-A2MD-06 12 52647101 52647101 C T KRT7 3'Flank 0.33 TCGA-EE-A2MD-06 12 52864331 52864331 C T KRT6C Missense_Mutation p.M387I 0.25 tolerated(0.05) benign(0.085) TCGA-EE-A2MD-06 12 53010096 53010096 C T KRT73 Silent p.L172L 0.26 TCGA-EE-A2MD-06 12 53069116 53069116 G A KRT1 Missense_Mutation p.S599F 0.50 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A2MD-06 12 53069117 53069117 A T KRT1 Missense_Mutation p.S599T 0.48 tolerated_low_confidence(0.37) unknown(0) TCGA-EE-A2MD-06 12 53096888 53096888 C T KRT77 Missense_Mutation p.G111S 0.26 tolerated(0.5) benign(0.13) TCGA-EE-A2MD-06 12 53207707 53207707 C T KRT4 Missense_Mutation p.G46R 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MD-06 12 53470942 53470942 G A SPRYD3 Nonsense_Mutation p.Q43* 0.32 TCGA-EE-A2MD-06 12 54913090 54913090 G A NCKAP1L Silent p.V533V 0.35 TCGA-EE-A2MD-06 12 55367343 55367343 G A TESPA1 Intron 0.26 TCGA-EE-A2MD-06 12 55420485 55420485 C T NEUROD4 Nonsense_Mutation p.R88* 0.23 TCGA-EE-A2MD-06 12 55759585 55759585 C T OR6C75 Nonsense_Mutation p.Q231* 0.31 TCGA-EE-A2MD-06 12 55945125 55945125 G A OR6C4 Missense_Mutation p.G39R 0.29 deleterious_low_confidence(0.01) benign(0.039) TCGA-EE-A2MD-06 12 55945239 55945239 C T OR6C4 Missense_Mutation p.P77S 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MD-06 12 5604142 5604142 C T NTF3 Silent p.I267I 0.40 TCGA-EE-A2MD-06 12 56090745 56090745 C T ITGA7 Missense_Mutation p.G563S 0.38 deleterious(0.05) possibly_damaging(0.721) TCGA-EE-A2MD-06 12 56506722 56506722 C T PA2G4 3'UTR 0.14 TCGA-EE-A2MD-06 12 56527604 56527604 C T ESYT1 Missense_Mutation p.P474S 0.35 tolerated(0.13) possibly_damaging(0.835) TCGA-EE-A2MD-06 12 56527655 56527655 C T ESYT1 Missense_Mutation p.P491S 0.35 deleterious(0.03) probably_damaging(0.966) TCGA-EE-A2MD-06 12 56915759 56915759 C T RBMS2 5'UTR 0.36 TCGA-EE-A2MD-06 12 57112116 57112116 G A NACA Intron 0.24 TCGA-EE-A2MD-06 12 57437649 57437649 C T MYO1A Missense_Mutation p.D295N 0.23 tolerated(0.49) benign(0.006) TCGA-EE-A2MD-06 12 57585135 57585135 C T LRP1 Silent p.F2423F 0.21 TCGA-EE-A2MD-06 12 57597059 57597059 G A LRP1 Missense_Mutation p.G3603S 0.31 probably_damaging(1) TCGA-EE-A2MD-06 12 57881750 57881750 C T MARS 5'UTR 0.33 TCGA-EE-A2MD-06 12 5848555 5848555 G A ANO2 Silent p.F450F 0.39 TCGA-EE-A2MD-06 12 6422912 6422912 C T PLEKHG6 Missense_Mutation p.H86Y 0.34 tolerated(0.82) benign(0.001) TCGA-EE-A2MD-06 12 6443283 6443283 G A TNFRSF1A Missense_Mutation p.S56L 0.33 deleterious(0) possibly_damaging(0.814) TCGA-EE-A2MD-06 12 665942 665942 G A B4GALNT3 Missense_Mutation p.V764I 0.34 tolerated(0.3) benign(0.008) TCGA-EE-A2MD-06 12 6715448 6715448 G A CHD4 Missense_Mutation p.P31L 0.42 tolerated_low_confidence(1) benign(0.005) TCGA-EE-A2MD-06 12 68051932 68051932 C T DYRK2 Silent p.L415L 0.36 TCGA-EE-A2MD-06 12 68642506 68642506 C T IL22 3'UTR 0.30 TCGA-EE-A2MD-06 12 6936219 6936219 C T GPR162 Silent p.S539S 0.24 TCGA-EE-A2MD-06 12 6972504 6972504 A T USP5 Missense_Mutation p.E639D 0.29 tolerated(0.66) benign(0) TCGA-EE-A2MD-06 12 69753650 69753650 C T YEATS4 5'UTR 0.75 TCGA-EE-A2MD-06 12 70206777 70206777 C T RAB3IP Nonsense_Mutation p.R438* 0.30 TCGA-EE-A2MD-06 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.26 deleterious(0.02) benign(0.145) TCGA-EE-A2MD-06 12 70953309 70953309 C T PTPRB Missense_Mutation p.D1510N 0.35 tolerated(0.08) probably_damaging(0.923) TCGA-EE-A2MD-06 12 70988436 70988436 C T PTPRB Missense_Mutation p.G443S 0.31 tolerated(0.22) probably_damaging(1) TCGA-EE-A2MD-06 12 71032871 71032871 C T PTPRR 3'UTR 0.31 TCGA-EE-A2MD-06 12 71147971 71147971 C T PTPRR Missense_Mutation p.M246I 0.23 tolerated(0.11) probably_damaging(0.989) TCGA-EE-A2MD-06 12 72771779 72771779 G A TRHDE Missense_Mutation p.R353Q 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2MD-06 12 72956634 72956634 C T TRHDE Missense_Mutation p.A574V 0.20 tolerated(0.09) benign(0.01) TCGA-EE-A2MD-06 12 73012704 73012704 G A TRHDE Silent p.E740E 0.30 TCGA-EE-A2MD-06 12 7361653 7361653 C T PEX5 Missense_Mutation p.P498S 0.33 deleterious(0.04) benign(0.398) TCGA-EE-A2MD-06 12 7550860 7550860 C T CD163L1 Missense_Mutation p.G577S 0.31 tolerated(0.16) benign(0.027) TCGA-EE-A2MD-06 12 7556136 7556136 C T CD163L1 Missense_Mutation p.C468Y 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 7867918 7867918 C T DPPA3 Silent p.I74I 0.35 TCGA-EE-A2MD-06 12 81101550 81101550 G A MYF6 Missense_Mutation p.E18K 0.21 deleterious(0.01) possibly_damaging(0.578) TCGA-EE-A2MD-06 12 81503382 81503382 C T ACSS3 Missense_Mutation p.R119C 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 12 8192620 8192620 C T FOXJ2 Silent p.D64D 0.33 TCGA-EE-A2MD-06 12 82796878 82796878 C T METTL25 Silent p.L416L 0.37 TCGA-EE-A2MD-06 12 85277534 85277534 G A SLC6A15 Intron 0.24 TCGA-EE-A2MD-06 12 85277535 85277535 T A SLC6A15 Intron 0.24 TCGA-EE-A2MD-06 12 88939543 88939543 C T KITLG Missense_Mutation p.D39N 0.26 deleterious(0) probably_damaging(0.929) TCGA-EE-A2MD-06 12 8994114 8994114 G A A2ML1 Silent p.G410G 0.25 TCGA-EE-A2MD-06 12 8998761 8998761 T C A2ML1 Silent p.S542S 0.35 TCGA-EE-A2MD-06 12 9010680 9010680 C T A2ML1 Silent p.L1082L 0.44 TCGA-EE-A2MD-06 12 9262611 9262611 G A A2M Silent p.I175I 0.33 TCGA-EE-A2MD-06 12 9264772 9264772 G A A2M Missense_Mutation p.H156Y 0.27 tolerated(0.21) benign(0.006) TCGA-EE-A2MD-06 12 95603962 95603962 C T FGD6 Silent p.Q366Q 0.27 TCGA-EE-A2MD-06 12 95927181 95927181 C T USP44 Missense_Mutation p.M284I 0.21 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A2MD-06 12 97073486 97073486 G A C12orf55 Missense_Mutation p.R1891Q 0.33 tolerated(0.19) benign(0.014) TCGA-EE-A2MD-06 12 97078503 97078503 G A C12orf55 Missense_Mutation p.E1932K 0.25 tolerated(0.14) benign(0.041) TCGA-EE-A2MD-06 12 97102521 97102521 G A C12orf55 Missense_Mutation p.E2222K 0.25 deleterious(0.01) benign(0) TCGA-EE-A2MD-06 12 9885732 9885732 C T CLECL1 Silent p.R43R 0.25 TCGA-EE-A2MD-06 13 100207847 100207847 T G TM9SF2 Silent p.V566V 0.23 TCGA-EE-A2MD-06 13 100635374 100635374 C T ZIC2 Silent p.I352I 0.27 TCGA-EE-A2MD-06 13 111109730 111109730 C T COL4A2 Silent p.G460G 0.24 TCGA-EE-A2MD-06 13 111996509 111996509 C T TEX29 3'UTR 0.30 TCGA-EE-A2MD-06 13 113052392 113052392 C T SPACA7 Silent p.L61L 0.24 TCGA-EE-A2MD-06 13 113223516 113223516 G A TUBGCP3 Missense_Mutation p.P45L 0.23 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MD-06 13 113771786 113771786 G A F7 Splice_Site p.X228_splice 0.30 TCGA-EE-A2MD-06 13 113803237 113803237 G A F10 Silent p.R291R 0.28 TCGA-EE-A2MD-06 13 113899312 113899312 C T CUL4A Silent p.L461L 0.37 TCGA-EE-A2MD-06 13 114322064 114322064 C T GRK1 Silent p.L121L 0.33 TCGA-EE-A2MD-06 13 114498161 114498161 C T TMEM255B Missense_Mutation p.A98V 0.53 tolerated(0.07) probably_damaging(0.959) TCGA-EE-A2MD-06 13 19752519 19752519 C T TUBA3C Missense_Mutation p.G81E 0.42 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A2MD-06 13 20025365 20025365 C T TPTE2 Missense_Mutation p.E248K 0.23 deleterious(0.02) possibly_damaging(0.531) TCGA-EE-A2MD-06 13 20659964 20659964 C T ZMYM2 Missense_Mutation p.P1315L 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 13 23906653 23906653 G A SACS Missense_Mutation p.R3788C 0.39 probably_damaging(0.995) TCGA-EE-A2MD-06 13 23908108 23908108 G A SACS Missense_Mutation p.P3303S 0.28 probably_damaging(0.997) TCGA-EE-A2MD-06 13 24890298 24890298 G A C1QTNF9 Missense_Mutation p.G53S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 13 27250709 27250709 C T WASF3 Silent p.T188T 0.29 TCGA-EE-A2MD-06 13 31513914 31513914 C T TEX26 Missense_Mutation p.R49C 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 13 32802675 32802675 C T FRY Silent p.I1763I 0.29 TCGA-EE-A2MD-06 13 33635671 33635671 G T KL Nonsense_Mutation p.E819* 0.30 TCGA-EE-A2MD-06 13 36410263 36410263 C T DCLK1 Missense_Mutation p.G379D 0.24 tolerated(0.49) probably_damaging(0.969) TCGA-EE-A2MD-06 13 37269151 37269151 C T SERTM1 5'UTR 0.47 TCGA-EE-A2MD-06 13 37573378 37573378 G A ALG5 Silent p.L20L 0.42 TCGA-EE-A2MD-06 13 38211422 38211422 C T TRPC4 Missense_Mutation p.R856Q 0.31 tolerated_low_confidence(0.08) benign(0.022) TCGA-EE-A2MD-06 13 38237841 38237841 G A TRPC4 Missense_Mutation p.S467L 0.32 tolerated(0.06) benign(0.062) TCGA-EE-A2MD-06 13 38357408 38357408 C T TRPC4 Silent p.R21R 0.30 TCGA-EE-A2MD-06 13 39450237 39450237 C T FREM2 Missense_Mutation p.P2787L 0.27 deleterious(0) benign(0.1) TCGA-EE-A2MD-06 13 39611365 39611365 G A PROSER1 Silent p.S5S 0.32 TCGA-EE-A2MD-06 13 40325242 40325242 C T COG6 3'UTR 0.22 TCGA-EE-A2MD-06 13 45582997 45582997 G A GPALPP1 Missense_Mutation p.D131N 0.31 tolerated(0.14) benign(0.082) TCGA-EE-A2MD-06 13 47316026 47316026 C T LRCH1 3'UTR 0.26 TCGA-EE-A2MD-06 13 47409042 47409042 C T HTR2A Missense_Mutation p.G449E 0.30 tolerated_low_confidence(1) benign(0.274) TCGA-EE-A2MD-06 13 49281386 49281386 C A CYSLTR2 Silent p.R145R 0.30 TCGA-EE-A2MD-06 13 50066079 50066079 C T SETDB2 3'UTR 0.25 TCGA-EE-A2MD-06 13 53049131 53049131 C T CKAP2 Missense_Mutation p.S636F 0.37 tolerated(0.36) benign(0.345) TCGA-EE-A2MD-06 13 58207409 58207409 C T PCDH17 Silent p.F243F 0.23 TCGA-EE-A2MD-06 13 70293634 70293634 T C KLHL1 Missense_Mutation p.N628D 0.32 deleterious(0.02) possibly_damaging(0.484) TCGA-EE-A2MD-06 13 78214846 78214846 G A SCEL Missense_Mutation p.R625Q 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 13 86370608 86370608 G A SLITRK6 Silent p.L12L 0.40 TCGA-EE-A2MD-06 13 92560304 92560304 T C GPC5 Missense_Mutation p.V465A 0.24 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2MD-06 13 98645155 98645155 G A IPO5 Missense_Mutation p.D245N 0.29 tolerated(0.26) benign(0.326) TCGA-EE-A2MD-06 13 99115960 99115960 G A STK24 Missense_Mutation p.S317F 0.25 deleterious(0) probably_damaging(0.927) TCGA-EE-A2MD-06 14 100129338 100129338 C T HHIPL1 Missense_Mutation p.S543F 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 14 101200607 101200607 C T DLK1 Missense_Mutation p.P176S 0.51 tolerated(0.24) possibly_damaging(0.458) TCGA-EE-A2MD-06 14 101498377 101498377 C T MIR543 RNA 0.36 TCGA-EE-A2MD-06 14 106208459 106208459 C T IGHG1 Silent p.V147V 0.51 TCGA-EE-A2MD-06 14 106757745 106757745 G A IGHV2-26 Missense_Mutation p.L88F 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2MD-06 14 107114020 107114020 C A IGHV3-64 Silent p.V25V 0.46 TCGA-EE-A2MD-06 14 20216060 20216060 C T OR4Q3 Silent p.I158I 0.41 TCGA-EE-A2MD-06 14 20295729 20295729 G A OR4N2 Missense_Mutation p.G41E 0.33 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2MD-06 14 20666088 20666088 C T OR11G2 Silent p.I198I 0.36 TCGA-EE-A2MD-06 14 21485762 21485762 G A NDRG2 Missense_Mutation p.S370F 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 14 21990273 21990273 G A SALL2 3'UTR 0.54 TCGA-EE-A2MD-06 14 22217917 22217917 G A TRAV5 Missense_Mutation p.D90N 0.39 tolerated(0.15) benign(0.008) TCGA-EE-A2MD-06 14 24567503 24567503 C T PCK2 Missense_Mutation p.P123S 0.39 tolerated(0.06) possibly_damaging(0.589) TCGA-EE-A2MD-06 14 28734231 28734231 C T BNIP3P1 RNA 0.56 TCGA-EE-A2MD-06 14 32561514 32561514 G A ARHGAP5 Missense_Mutation p.G547R 0.49 tolerated(0.18) probably_damaging(0.957) TCGA-EE-A2MD-06 14 33069899 33069899 G A AKAP6 Silent p.R877R 0.50 TCGA-EE-A2MD-06 14 33293360 33293360 C T AKAP6 Missense_Mutation p.S2114F 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 14 36104692 36104692 G A RALGAPA1 Missense_Mutation p.S1424F 0.50 tolerated(0.06) probably_damaging(0.917) TCGA-EE-A2MD-06 14 36207788 36207788 A G RALGAPA1 Silent p.G506G 0.36 TCGA-EE-A2MD-06 14 50844945 50844945 G A CDKL1 Intron 0.43 TCGA-EE-A2MD-06 14 55168868 55168868 C T SAMD4A Silent p.L95L 0.33 TCGA-EE-A2MD-06 14 56233494 56233494 G A RP11-813I20.2 Intron 0.31 TCGA-EE-A2MD-06 14 57752955 57752955 C T AP5M1 Silent p.I436I 0.46 TCGA-EE-A2MD-06 14 57957678 57957678 C T C14orf105 Intron 0.41 TCGA-EE-A2MD-06 14 64588807 64588807 G A SYNE2 Silent p.Q4412Q 0.57 TCGA-EE-A2MD-06 14 64988779 64988779 C T ZBTB1 Missense_Mutation p.P186L 0.42 tolerated(0.11) possibly_damaging(0.617) TCGA-EE-A2MD-06 14 75475861 75475861 A T EIF2B2 Missense_Mutation p.E342D 0.42 deleterious(0) possibly_damaging(0.62) TCGA-EE-A2MD-06 14 77292931 77292931 G C C14orf166B Intron 0.50 TCGA-EE-A2MD-06 14 78063594 78063594 G A SPTLC2 Nonsense_Mutation p.R88* 0.47 TCGA-EE-A2MD-06 14 90650698 90650698 C T KCNK13 Missense_Mutation p.S193F 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 14 92171042 92171042 G A CATSPERB Missense_Mutation p.P157L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 14 94845793 94845793 G A SERPINA1 Intron 0.40 TCGA-EE-A2MD-06 14 95054319 95054319 G A SERPINA5 Splice_Site p.X207_splice 0.53 TCGA-EE-A2MD-06 14 97022680 97022680 C T PAPOLA Missense_Mutation p.P645L 0.45 deleterious(0.01) possibly_damaging(0.655) TCGA-EE-A2MD-06 15 102312110 102312110 C T RN7SL209P 3'Flank 0.52 TCGA-EE-A2MD-06 15 22332526 22332526 C T RP11-69H14.6 RNA 0.50 TCGA-EE-A2MD-06 15 23931342 23931342 C T NDN 3'UTR 0.38 TCGA-EE-A2MD-06 15 25307561 25307561 C T SNORD116-5 RNA 0.41 TCGA-EE-A2MD-06 15 25326359 25326359 G A SNORD116-12 3'Flank 0.31 TCGA-EE-A2MD-06 15 25585360 25585360 G A UBE3A Silent p.I793I 0.46 TCGA-EE-A2MD-06 15 25925961 25925961 G A ATP10A Missense_Mutation p.T1225I 0.44 deleterious(0) benign(0.03) TCGA-EE-A2MD-06 15 28436199 28436199 C G HERC2 Missense_Mutation p.G2854A 0.34 possibly_damaging(0.764) TCGA-EE-A2MD-06 15 31793992 31793992 G A OTUD7A Missense_Mutation p.P351S 0.51 tolerated(0.2) probably_damaging(1) TCGA-EE-A2MD-06 15 31795993 31795993 C T OTUD7A Missense_Mutation p.E301K 0.66 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MD-06 15 34635360 34635360 C T NOP10 5'UTR 0.50 TCGA-EE-A2MD-06 15 40034077 40034077 G A FSIP1 Missense_Mutation p.T195I 0.59 tolerated(0.1) benign(0.084) TCGA-EE-A2MD-06 15 40094123 40094123 G A GPR176 Missense_Mutation p.S253F 0.44 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MD-06 15 40590104 40590104 G A PLCB2 Silent p.I404I 0.30 TCGA-EE-A2MD-06 15 41276081 41276081 G A INO80 Silent p.P1372P 0.48 TCGA-EE-A2MD-06 15 41476750 41476750 C T EXD1 Silent p.K308K 0.64 TCGA-EE-A2MD-06 15 42279469 42279469 G A PLA2G4E Missense_Mutation p.L646F 0.63 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2MD-06 15 45003781 45003784 CTCT - B2M Frame_Shift_Del p.S14Ffs*29 0.46 TCGA-EE-A2MD-06 15 45047536 45047536 G A TRIM69 Missense_Mutation p.E149K 0.40 deleterious(0.05) benign(0.044) TCGA-EE-A2MD-06 15 49292060 49292060 T G SECISBP2L Silent p.V791V 0.28 TCGA-EE-A2MD-06 15 50193395 50193395 G A ATP8B4 Missense_Mutation p.S728F 0.38 tolerated(0.27) benign(0.111) TCGA-EE-A2MD-06 15 50528280 50528280 C T SLC27A2 Missense_Mutation p.T617I 0.47 tolerated(0.08) benign(0.001) TCGA-EE-A2MD-06 15 50528281 50528281 C T SLC27A2 Silent p.T617T 0.46 TCGA-EE-A2MD-06 15 51829950 51829950 G A DMXL2 Missense_Mutation p.S451F 0.32 deleterious(0.03) possibly_damaging(0.847) TCGA-EE-A2MD-06 15 53998203 53998203 G A WDR72 Silent p.F341F 0.56 TCGA-EE-A2MD-06 15 54914563 54914563 C T UNC13C Missense_Mutation p.H2049Y 0.41 deleterious_low_confidence(0.04) benign(0.263) TCGA-EE-A2MD-06 15 55930825 55930825 C T PRTG Missense_Mutation p.E792K 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MD-06 15 60297304 60297304 C T FOXB1 Missense_Mutation p.P48S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 15 60297305 60297305 C A FOXB1 Missense_Mutation p.P48H 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 15 64218270 64218270 G A DAPK2 Silent p.L228L 0.61 TCGA-EE-A2MD-06 15 64222634 64222634 C T DAPK2 Missense_Mutation p.E202K 0.56 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MD-06 15 64275775 64275775 C T DAPK2 Missense_Mutation p.D91N 0.65 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A2MD-06 15 64455229 64455229 G A PPIB 5'UTR 0.57 TCGA-EE-A2MD-06 15 65114806 65114806 C T PIF1 Missense_Mutation p.A188T 0.67 tolerated(0.26) benign(0.001) TCGA-EE-A2MD-06 15 65157146 65157146 C T PLEKHO2 Missense_Mutation p.P178S 0.56 tolerated(0.09) possibly_damaging(0.765) TCGA-EE-A2MD-06 15 65628177 65628177 C T IGDCC3 Missense_Mutation p.R176K 0.65 tolerated(0.14) benign(0.034) TCGA-EE-A2MD-06 15 71704066 71704066 G A THSD4 Missense_Mutation p.M352I 0.73 tolerated(0.58) benign(0) TCGA-EE-A2MD-06 15 72700033 72700033 G A TMEM202 Silent p.G207G 0.82 TCGA-EE-A2MD-06 15 74467805 74467805 C T ISLR Silent p.I202I 0.68 TCGA-EE-A2MD-06 15 75981934 75981934 C T CSPG4 Missense_Mutation p.R491Q 0.70 tolerated(0.05) probably_damaging(0.963) TCGA-EE-A2MD-06 15 77067374 77067374 G A SCAPER Missense_Mutation p.S286L 0.71 tolerated(0.14) benign(0.005) TCGA-EE-A2MD-06 15 77906604 77906604 G A LINGO1 Missense_Mutation p.P549S 0.68 tolerated(0.11) benign(0.004) TCGA-EE-A2MD-06 15 83718904 83718904 A G BTBD1 Silent p.L195L 0.65 TCGA-EE-A2MD-06 15 84683372 84683372 C T ADAMTSL3 Missense_Mutation p.S1351F 0.79 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 15 85401399 85401399 C T ALPK3 Missense_Mutation p.P1346S 0.53 tolerated(0.23) benign(0.178) TCGA-EE-A2MD-06 15 87531227 87531227 A G AGBL1 Silent p.S1031S 0.71 TCGA-EE-A2MD-06 15 88423523 88423523 C T NTRK3 Nonsense_Mutation p.W771* 0.65 TCGA-EE-A2MD-06 15 90610515 90610515 C T ZNF710 Missense_Mutation p.P49L 0.74 tolerated_low_confidence(0.33) benign(0.051) TCGA-EE-A2MD-06 15 90610516 90610516 C T ZNF710 Silent p.P49P 0.74 TCGA-EE-A2MD-06 16 1129186 1129186 C T SSTR5 Silent p.P106P 0.42 TCGA-EE-A2MD-06 16 11785896 11785896 G A TXNDC11 Nonsense_Mutation p.Q384* 0.43 TCGA-EE-A2MD-06 16 11785897 11785897 G A TXNDC11 Silent p.D383D 0.42 TCGA-EE-A2MD-06 16 15179506 15179506 A T RRN3 Missense_Mutation p.D174E 0.39 tolerated(0.11) probably_damaging(0.987) TCGA-EE-A2MD-06 16 1573895 1573895 G A IFT140 Silent p.I1068I 0.30 TCGA-EE-A2MD-06 16 15841453 15841453 C T MYH11 Silent p.A802A 0.31 TCGA-EE-A2MD-06 16 18532158 18532158 G A NOMO2 Silent p.T734T 0.16 TCGA-EE-A2MD-06 16 18806878 18806878 G A ARL6IP1 Missense_Mutation p.H106Y 0.33 deleterious(0.02) benign(0.132) TCGA-EE-A2MD-06 16 18907478 18907478 G A SMG1 Missense_Mutation p.S103L 0.50 tolerated_low_confidence(0.4) probably_damaging(0.978) TCGA-EE-A2MD-06 16 19460898 19460898 C T TMC5 Silent p.V331V 0.24 TCGA-EE-A2MD-06 16 19693631 19693631 G A C16orf62 Missense_Mutation p.E905K 0.21 tolerated(0.88) benign(0.014) TCGA-EE-A2MD-06 16 20477027 20477027 G A ACSM2A Silent p.V122V 0.25 TCGA-EE-A2MD-06 16 20548646 20548646 C T ACSM2B Silent p.G556G 0.29 TCGA-EE-A2MD-06 16 20682950 20682950 C T ACSM1 Missense_Mutation p.D219N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 16 21115824 21115824 C T DNAH3 Silent p.K778K 0.27 TCGA-EE-A2MD-06 16 21218165 21218165 G A ZP2 Silent p.F159F 0.38 TCGA-EE-A2MD-06 16 21261062 21261062 G A ANKS4B Missense_Mutation p.D59N 0.36 tolerated(0.21) benign(0.036) TCGA-EE-A2MD-06 16 21698771 21698771 G A OTOA Missense_Mutation p.R146Q 0.33 tolerated(0.08) benign(0.18) TCGA-EE-A2MD-06 16 22328451 22328451 C T POLR3E Silent p.A263A 0.31 TCGA-EE-A2MD-06 16 2331480 2331480 G A ABCA3 Missense_Mutation p.P1356S 0.41 tolerated(0.74) benign(0.004) TCGA-EE-A2MD-06 16 23625360 23625360 G A PALB2 Nonsense_Mutation p.Q1056* 0.25 TCGA-EE-A2MD-06 16 24373007 24373007 C T CACNG3 Silent p.I257I 0.22 TCGA-EE-A2MD-06 16 27363934 27363934 C T IL4R Missense_Mutation p.S196F 0.27 tolerated(0.82) benign(0.008) TCGA-EE-A2MD-06 16 28507365 28507365 G A APOBR Missense_Mutation p.E335K 0.26 deleterious(0.05) benign(0.016) TCGA-EE-A2MD-06 16 28508748 28508748 G A APOBR Missense_Mutation p.E796K 0.21 tolerated(0.08) possibly_damaging(0.486) TCGA-EE-A2MD-06 16 28855798 28855798 G A TUFM Silent p.P253P 0.29 TCGA-EE-A2MD-06 16 28855799 28855799 G A TUFM Missense_Mutation p.P253L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 16 28912174 28912174 G A ATP2A1 Silent p.V679V 0.38 TCGA-EE-A2MD-06 16 29974436 29974436 C T TMEM219 5'UTR 0.30 TCGA-EE-A2MD-06 16 30035385 30035385 C A C16orf92 Missense_Mutation p.L119I 0.26 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A2MD-06 16 30038064 30038064 C T FAM57B Missense_Mutation p.G104R 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-EE-A2MD-06 16 30495274 30495274 C T ITGAL Silent p.I283I 0.34 TCGA-EE-A2MD-06 16 30596534 30596534 C T ZNF785 Silent p.V81V 0.28 TCGA-EE-A2MD-06 16 3405993 3405993 C T OR2C1 Missense_Mutation p.S18L 0.32 deleterious(0) benign(0.424) TCGA-EE-A2MD-06 16 34624169 34624169 G C RP11-488I20.3 RNA 0.40 TCGA-EE-A2MD-06 16 3633257 3633257 G A SLX4 Missense_Mutation p.P1665L 0.17 deleterious(0.02) benign(0.01) TCGA-EE-A2MD-06 16 3779649 3779649 C T CREBBP Missense_Mutation p.R1800Q 0.37 unknown(0) TCGA-EE-A2MD-06 16 48296762 48296762 C T LONP2 Missense_Mutation p.P321S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 16 4935273 4935273 C T PPL Missense_Mutation p.R1128K 0.26 tolerated(0.34) probably_damaging(0.997) TCGA-EE-A2MD-06 16 4945319 4945319 C T PPL Silent p.R395R 0.32 TCGA-EE-A2MD-06 16 51173577 51173577 G A SALL1 Silent p.S852S 0.11 TCGA-EE-A2MD-06 16 55880590 55880590 G A CES5A Missense_Mutation p.P530S 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 16 55886868 55886868 G A CES5A Nonsense_Mutation p.R429* 0.47 TCGA-EE-A2MD-06 16 56782158 56782158 C T NUP93 5'UTR 0.31 TCGA-EE-A2MD-06 16 57054867 57054867 G A NLRC5 Silent p.E81E 0.28 TCGA-EE-A2MD-06 16 57060873 57060873 C T NLRC5 Missense_Mutation p.P673L 0.33 tolerated(0.31) benign(0.005) TCGA-EE-A2MD-06 16 57707306 57707306 G A GPR97 Silent p.L44L 0.47 TCGA-EE-A2MD-06 16 67265199 67265199 C T FHOD1 Silent p.T853T 0.36 TCGA-EE-A2MD-06 16 67322296 67322296 C T PLEKHG4 Silent p.P1149P 0.33 TCGA-EE-A2MD-06 16 67662404 67662404 C T CTCF Silent p.F550F 0.32 TCGA-EE-A2MD-06 16 70884501 70884501 C T HYDIN Silent p.L4167L 0.26 TCGA-EE-A2MD-06 16 70891710 70891710 G A HYDIN Missense_Mutation p.P4065S 0.15 probably_damaging(0.932) TCGA-EE-A2MD-06 16 70926327 70926327 G A HYDIN Silent p.V3118V 0.21 TCGA-EE-A2MD-06 16 71610138 71610138 C T TAT Missense_Mutation p.D61N 0.55 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MD-06 16 72142768 72142768 G A DHX38 Missense_Mutation p.G1109R 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 16 726698 726698 C T RHBDL1 Silent p.F141F 0.20 TCGA-EE-A2MD-06 16 7382920 7382920 G A RBFOX1 5'UTR 0.38 TCGA-EE-A2MD-06 16 74394547 74394547 G A RP11-252A24.2 RNA 0.25 TCGA-EE-A2MD-06 16 7645595 7645595 G A RBFOX1 Silent p.R191R 0.20 TCGA-EE-A2MD-06 16 76569483 76569483 C T CNTNAP4 Missense_Mutation p.R860W 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 16 80583473 80583473 C T DYNLRB2 Missense_Mutation p.R58C 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MD-06 16 81253727 81253727 C T PKD1L2 Silent p.R83R 0.31 TCGA-EE-A2MD-06 16 813661 813661 G A MSLN Missense_Mutation p.G50E 0.29 tolerated(1) benign(0.021) TCGA-EE-A2MD-06 16 83636148 83636148 G A CDH13 Silent p.T397T 0.08 TCGA-EE-A2MD-06 16 87445337 87445337 G A ZCCHC14 Missense_Mutation p.P860L 0.41 tolerated(0.31) unknown(0) TCGA-EE-A2MD-06 16 88691074 88691074 C T ZC3H18 Missense_Mutation p.P655S 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MD-06 17 10248823 10248823 G A MYH13 Silent p.F458F 0.50 TCGA-EE-A2MD-06 17 10295881 10295881 C T MYH8 Missense_Mutation p.R1849Q 0.39 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A2MD-06 17 10297710 10297710 C T MYH8 Silent p.L1674L 0.40 TCGA-EE-A2MD-06 17 10299869 10299869 C G MYH8 Splice_Site p.X1510_splice 0.56 TCGA-EE-A2MD-06 17 10303854 10303854 C T MYH8 Silent p.R1196R 0.39 TCGA-EE-A2MD-06 17 10353861 10353861 C T MYH4 Missense_Mutation p.G1364R 0.47 tolerated(0.06) benign(0.07) TCGA-EE-A2MD-06 17 10355326 10355326 C T MYH4 Missense_Mutation p.E1224K 0.42 deleterious(0) possibly_damaging(0.818) TCGA-EE-A2MD-06 17 10402058 10402058 C T MYH1 Missense_Mutation p.E1356K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 17 10408571 10408571 C T MYH1 Missense_Mutation p.D782N 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 17 10411972 10411972 G A MYH1 Silent p.S535S 0.41 TCGA-EE-A2MD-06 17 10417143 10417143 G A MYH1 Missense_Mutation p.R246C 0.48 deleterious(0) benign(0.254) TCGA-EE-A2MD-06 17 10440997 10440997 G A MYH2 Silent p.I524I 0.52 TCGA-EE-A2MD-06 17 11631209 11631209 C T DNAH9 Silent p.S1928S 0.50 TCGA-EE-A2MD-06 17 11666863 11666863 G A DNAH9 Missense_Mutation p.E2368K 0.36 benign(0.051) TCGA-EE-A2MD-06 17 1183440 1183440 G A TUSC5 Missense_Mutation p.G49R 0.49 deleterious(0.03) benign(0.142) TCGA-EE-A2MD-06 17 12639612 12639612 G A MYOCD Missense_Mutation p.A184T 0.33 tolerated(0.44) benign(0.025) TCGA-EE-A2MD-06 17 12666750 12666750 C T MYOCD Missense_Mutation p.S917L 0.45 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2MD-06 17 12666985 12666985 G A MYOCD 3'UTR 0.35 TCGA-EE-A2MD-06 17 12888155 12888155 G A ARHGAP44 Silent p.S749S 0.40 TCGA-EE-A2MD-06 17 14110257 14110257 C T COX10 Silent p.C353C 0.57 TCGA-EE-A2MD-06 17 1540267 1540267 G A SCARF1 Missense_Mutation p.S485F 0.47 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MD-06 17 15492306 15492306 G A CDRT1 Missense_Mutation p.L748F 0.31 unknown(0) TCGA-EE-A2MD-06 17 18140908 18140908 C T LLGL1 Silent p.S575S 0.53 TCGA-EE-A2MD-06 17 21731223 21731223 C T UBBP4 Intron 0.44 TCGA-EE-A2MD-06 17 25976107 25976107 G A LGALS9 3'UTR 0.33 TCGA-EE-A2MD-06 17 263815 263815 C T C17orf97 Missense_Mutation p.T394M 0.32 tolerated(0.14) probably_damaging(0.968) TCGA-EE-A2MD-06 17 26965341 26965341 G A KIAA0100 Nonsense_Mutation p.Q481* 0.48 TCGA-EE-A2MD-06 17 27233206 27233206 G A PHF12 Missense_Mutation p.P1004S 0.31 deleterious_low_confidence(0) benign(0.113) TCGA-EE-A2MD-06 17 27889904 27889904 G A ABHD15 Missense_Mutation p.P361L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 17 28543189 28543189 G A SLC6A4 Silent p.L295L 0.51 TCGA-EE-A2MD-06 17 29219749 29219749 C T ATAD5 Silent p.T1461T 0.43 TCGA-EE-A2MD-06 17 30527974 30527974 G A RHOT1 Splice_Site p.X367_splice 0.45 TCGA-EE-A2MD-06 17 3181445 3181445 C T OR3A2 Missense_Mutation p.G262E 0.43 deleterious(0) possibly_damaging(0.816) TCGA-EE-A2MD-06 17 3195490 3195490 G A OR3A1 Silent p.I129I 0.42 TCGA-EE-A2MD-06 17 33475450 33475450 G A UNC45B Silent p.T56T 0.52 TCGA-EE-A2MD-06 17 33477204 33477204 G A UNC45B Missense_Mutation p.E115K 0.26 tolerated(0.05) benign(0.216) TCGA-EE-A2MD-06 17 33772608 33772608 C T SLFN13 Missense_Mutation p.R31K 0.42 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A2MD-06 17 3397679 3397679 A G ASPA Missense_Mutation p.K224E 0.48 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A2MD-06 17 34236138 34236138 C T AC015849.16 RNA 0.26 TCGA-EE-A2MD-06 17 34261738 34261738 G A LYZL6 3'UTR 0.43 TCGA-EE-A2MD-06 17 34964773 34964773 C T MRM1 Silent p.A328A 0.44 TCGA-EE-A2MD-06 17 35578713 35578713 G A ACACA Silent p.H1205H 0.21 TCGA-EE-A2MD-06 17 36099523 36099523 G A HNF1B Missense_Mutation p.S151F 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 17 38652320 38652320 G A TNS4 Missense_Mutation p.P120S 0.24 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A2MD-06 17 38859395 38859395 C T KRT24 Missense_Mutation p.G184E 0.49 tolerated(1) possibly_damaging(0.801) TCGA-EE-A2MD-06 17 38936698 38936698 C T KRT27 Missense_Mutation p.E180K 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 17 39138607 39138607 C T KRT40 Silent p.V213V 0.22 TCGA-EE-A2MD-06 17 39502871 39502871 G A KRT33A Missense_Mutation p.S309F 0.19 deleterious(0) benign(0.141) TCGA-EE-A2MD-06 17 39659251 39659251 C T KRT13 Missense_Mutation p.E279K 0.44 tolerated(0.46) possibly_damaging(0.887) TCGA-EE-A2MD-06 17 39724826 39724826 C T KRT9 Silent p.K368K 0.47 TCGA-EE-A2MD-06 17 39725762 39725762 G A KRT9 Silent p.T320T 0.40 TCGA-EE-A2MD-06 17 39881380 39881380 C T HAP1 Missense_Mutation p.R478Q 0.43 tolerated_low_confidence(0.23) benign(0.417) TCGA-EE-A2MD-06 17 40274945 40274945 G A HSPB9 Missense_Mutation p.R26Q 0.37 tolerated(0.9) benign(0.003) TCGA-EE-A2MD-06 17 40767065 40767065 C T TUBG1 3'UTR 0.63 TCGA-EE-A2MD-06 17 40997478 40997478 C T AOC2 Missense_Mutation p.R279W 0.36 deleterious(0.02) possibly_damaging(0.586) TCGA-EE-A2MD-06 17 41003334 41003334 G A AOC3 5'UTR 0.47 TCGA-EE-A2MD-06 17 41020194 41020194 C T AOC4P RNA 0.36 TCGA-EE-A2MD-06 17 41975675 41975675 G A MPP2 Silent p.F35F 0.39 TCGA-EE-A2MD-06 17 41975676 41975676 A C MPP2 Missense_Mutation p.F35C 0.38 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MD-06 17 42030303 42030303 C T PYY 3'UTR 0.23 TCGA-EE-A2MD-06 17 42429912 42429912 G A GRN Silent p.Q539Q 0.53 TCGA-EE-A2MD-06 17 42475713 42475713 G A GPATCH8 Silent p.L1244L 0.45 TCGA-EE-A2MD-06 17 42932017 42932017 G - EFTUD2 Frame_Shift_Del p.Y722* 0.30 TCGA-EE-A2MD-06 17 43216425 43216425 G A ACBD4 Nonsense_Mutation p.W242* 0.46 TCGA-EE-A2MD-06 17 43364173 43364173 G A MAP3K14 RNA 0.22 TCGA-EE-A2MD-06 17 44039838 44039838 T C MAPT Splice_Site p.X45_splice 0.40 TCGA-EE-A2MD-06 17 45286862 45286862 C T MYL4 Missense_Mutation p.P25L 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2MD-06 17 45914246 45914246 G A LRRC46 Silent p.V242V 0.25 TCGA-EE-A2MD-06 17 46608054 46608054 G A HOXB1 Silent p.T71T 0.53 TCGA-EE-A2MD-06 17 4836164 4836164 G A GP1BA Missense_Mutation p.D89N 0.63 tolerated(0.07) probably_damaging(0.96) TCGA-EE-A2MD-06 17 48542684 48542684 C T CHAD Missense_Mutation p.R352K 0.44 tolerated(0.47) benign(0.012) TCGA-EE-A2MD-06 17 48551159 48551159 G A ACSF2 Missense_Mutation p.E537K 0.27 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MD-06 17 48559766 48559766 C T RSAD1 Silent p.V263V 0.18 TCGA-EE-A2MD-06 17 48678463 48678463 G A CACNA1G Silent p.V1281V 0.17 TCGA-EE-A2MD-06 17 48768473 48768473 G A ABCC3 Missense_Mutation p.G1499E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 17 49233063 49233063 C T NME1 Silent p.V41V 0.20 TCGA-EE-A2MD-06 17 51900950 51900950 G A KIF2B Missense_Mutation p.E186K 0.10 deleterious(0.04) possibly_damaging(0.783) TCGA-EE-A2MD-06 17 53084923 53084923 C T STXBP4 Missense_Mutation p.P211S 0.23 tolerated(0.3) benign(0.132) TCGA-EE-A2MD-06 17 5462527 5462527 C T NLRP1 Missense_Mutation p.E497K 0.47 tolerated(0.23) benign(0.042) TCGA-EE-A2MD-06 17 56293523 56293523 C T MKS1 Missense_Mutation p.E115K 0.22 tolerated(0.5) benign(0.041) TCGA-EE-A2MD-06 17 56581722 56581722 G A MTMR4 Missense_Mutation p.S476F 0.44 deleterious(0) possibly_damaging(0.707) TCGA-EE-A2MD-06 17 56581792 56581792 G A MTMR4 Missense_Mutation p.R453C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 17 58511054 58511054 G A C17orf64 3'Flank 0.25 TCGA-EE-A2MD-06 17 59118169 59118169 G A BCAS3 Missense_Mutation p.E664K 0.42 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 17 59770874 59770874 C T BRIP1 Splice_Site p.X831_splice 0.52 TCGA-EE-A2MD-06 17 60741970 60741970 G A MRC2 Silent p.G60G 0.24 TCGA-EE-A2MD-06 17 61557233 61557233 G A ACE Silent p.E205E 0.23 TCGA-EE-A2MD-06 17 61903470 61903470 A G FTSJ3 Silent p.P82P 0.47 TCGA-EE-A2MD-06 17 62019223 62019223 G A SCN4A Silent p.F1473F 0.49 TCGA-EE-A2MD-06 17 62817929 62817929 G A RNU7-115P 3'Flank 0.48 TCGA-EE-A2MD-06 17 64880956 64880956 C T CACNG5 Intron 0.40 TCGA-EE-A2MD-06 17 6683194 6683194 G A FBXO39 Missense_Mutation p.E3K 0.44 deleterious_low_confidence(0.04) benign(0.004) TCGA-EE-A2MD-06 17 6722553 6722553 C T TEKT1 Silent p.L105L 0.47 TCGA-EE-A2MD-06 17 71348736 71348736 C T SDK2 Silent p.K1878K 0.25 TCGA-EE-A2MD-06 17 71426669 71426669 C T SDK2 Missense_Mutation p.D522N 0.39 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MD-06 17 72249964 72249964 C T TTYH2 Missense_Mutation p.P506S 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 17 72469840 72469840 G A CD300A Missense_Mutation p.G69E 0.35 tolerated(1) benign(0.008) TCGA-EE-A2MD-06 17 73096357 73096357 C T SLC16A5 Missense_Mutation p.T200I 0.45 tolerated(0.08) benign(0.034) TCGA-EE-A2MD-06 17 73258480 73258480 C T MRPS7 Intron 0.51 TCGA-EE-A2MD-06 17 73998030 73998030 C T CDK3 Silent p.V64V 0.32 TCGA-EE-A2MD-06 17 74019640 74019640 G A EVPL Silent p.F98F 0.41 TCGA-EE-A2MD-06 17 74151703 74151703 C T RNF157 Silent p.E546E 0.18 TCGA-EE-A2MD-06 17 74287969 74287969 A T QRICH2 Missense_Mutation p.Y781N 0.26 tolerated(0.15) possibly_damaging(0.597) TCGA-EE-A2MD-06 17 75186987 75186987 G A SEC14L1 Missense_Mutation p.E56K 0.25 deleterious(0.04) possibly_damaging(0.727) TCGA-EE-A2MD-06 17 76423027 76423027 C T DNAH17 Missense_Mutation p.E4274K 0.39 probably_damaging(0.929) TCGA-EE-A2MD-06 17 76457748 76457748 G A DNAH17 Missense_Mutation p.L3059F 0.38 probably_damaging(0.962) TCGA-EE-A2MD-06 17 76490830 76490830 G A DNAH17 Missense_Mutation p.P2025S 0.49 possibly_damaging(0.606) TCGA-EE-A2MD-06 17 76503578 76503578 C T DNAH17 Missense_Mutation p.D1512N 0.49 probably_damaging(0.951) TCGA-EE-A2MD-06 17 76993539 76993539 G A CANT1 Missense_Mutation p.L56F 0.47 tolerated(0.08) benign(0.021) TCGA-EE-A2MD-06 17 7701560 7701560 C T DNAH2 Silent p.A2772A 0.56 TCGA-EE-A2MD-06 17 8013814 8013814 G A ALOXE3 Silent p.I462I 0.29 TCGA-EE-A2MD-06 17 80320140 80320140 C T TEX19 Silent p.F38F 0.27 TCGA-EE-A2MD-06 17 9632076 9632076 C T USP43 Silent p.I1047I 0.73 TCGA-EE-A2MD-06 18 13068116 13068116 C T CEP192 Silent p.F1546F 0.23 TCGA-EE-A2MD-06 18 18539836 18539836 C T ROCK1 Silent p.K1159K 0.22 TCGA-EE-A2MD-06 18 19997691 19997691 G A CTAGE1 Silent p.F28F 0.28 TCGA-EE-A2MD-06 18 21426417 21426417 C T LAMA3 Silent p.I1292I 0.29 TCGA-EE-A2MD-06 18 21705489 21705489 C T TTC39C Silent p.F465F 0.29 TCGA-EE-A2MD-06 18 21705490 21705490 C T TTC39C Missense_Mutation p.P466S 0.29 tolerated(0.58) benign(0.004) TCGA-EE-A2MD-06 18 24496881 24496881 G A CHST9 Missense_Mutation p.S225F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 18 28574293 28574293 C T DSC3 Missense_Mutation p.D847N 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 18 28898163 28898163 A G DSG1 5'UTR 0.36 TCGA-EE-A2MD-06 18 28989707 28989707 G A DSG4 Intron 0.27 TCGA-EE-A2MD-06 18 28991307 28991307 G A DSG4 Missense_Mutation p.G770R 0.39 deleterious(0) possibly_damaging(0.576) TCGA-EE-A2MD-06 18 29046704 29046704 C T DSG3 Silent p.I541I 0.28 TCGA-EE-A2MD-06 18 29102112 29102112 C T DSG2 Missense_Mutation p.S197F 0.36 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MD-06 18 2951204 2951204 A G LPIN2 Missense_Mutation p.F147L 0.25 tolerated(0.75) benign(0.062) TCGA-EE-A2MD-06 18 3126851 3126851 G A MYOM1 Missense_Mutation p.R947C 0.19 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2MD-06 18 31318725 31318725 G A ASXL3 Missense_Mutation p.E453K 0.18 probably_damaging(0.997) TCGA-EE-A2MD-06 18 31323767 31323767 G A ASXL3 Missense_Mutation p.D1319N 0.31 benign(0.025) TCGA-EE-A2MD-06 18 31537410 31537410 C T NOL4 Silent p.K436K 0.21 TCGA-EE-A2MD-06 18 32398051 32398051 C T DTNA Intron 0.35 TCGA-EE-A2MD-06 18 34853055 34853055 G A CELF4 Silent p.F291F 0.31 TCGA-EE-A2MD-06 18 3879386 3879386 G A DLGAP1 Missense_Mutation p.P228L 0.39 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A2MD-06 18 42531846 42531846 C T SETBP1 Silent p.S847S 0.31 TCGA-EE-A2MD-06 18 43698189 43698189 C T HAUS1 Missense_Mutation p.S83F 0.28 deleterious(0) benign(0.323) TCGA-EE-A2MD-06 18 44559961 44559961 G A TCEB3B Silent p.L559L 0.49 TCGA-EE-A2MD-06 18 44560087 44560087 C T TCEB3B Missense_Mutation p.G517S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MD-06 18 44560508 44560508 G A TCEB3B Silent p.F376F 0.30 TCGA-EE-A2MD-06 18 47753682 47753682 G A CCDC11 3'UTR 0.38 TCGA-EE-A2MD-06 18 48190850 48190850 C T MAPK4 Silent p.I174I 0.33 TCGA-EE-A2MD-06 18 48500853 48500853 C T ELAC1 Missense_Mutation p.R27W 0.22 deleterious(0.04) possibly_damaging(0.71) TCGA-EE-A2MD-06 18 50432551 50432551 C T DCC Missense_Mutation p.P184S 0.34 tolerated(0.74) benign(0.001) TCGA-EE-A2MD-06 18 51820885 51820885 C T POLI 3'UTR 0.53 TCGA-EE-A2MD-06 18 52262317 52262317 G A DYNAP Missense_Mutation p.E95K 0.28 tolerated(0.08) possibly_damaging(0.801) TCGA-EE-A2MD-06 18 55221578 55221578 G A FECH Missense_Mutation p.L337F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 18 56203320 56203320 C T ALPK2 Missense_Mutation p.E1367K 0.32 tolerated(0.2) benign(0.063) TCGA-EE-A2MD-06 18 57103238 57103238 G A CCBE1 Missense_Mutation p.P375S 0.27 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MD-06 18 61234211 61234211 C T SERPINB12 Silent p.T395T 0.32 TCGA-EE-A2MD-06 18 61390527 61390527 G A SERPINB11 Missense_Mutation p.S358N 0.35 tolerated(0.19) benign(0.044) TCGA-EE-A2MD-06 18 61449693 61449693 C T SERPINB7 Silent p.F29F 0.28 TCGA-EE-A2MD-06 18 61471570 61471570 G T SERPINB7 Nonsense_Mutation p.E282* 0.22 TCGA-EE-A2MD-06 18 619283 619283 G A CLUL1 Missense_Mutation p.M59I 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 18 71740773 71740773 C T FBXO15 Missense_Mutation p.E486K 0.26 tolerated(0.45) benign(0.096) TCGA-EE-A2MD-06 18 72238423 72238423 G C CNDP1 Silent p.V253V 0.26 TCGA-EE-A2MD-06 18 72997752 72997752 C T TSHZ1 Silent p.S85S 0.17 TCGA-EE-A2MD-06 18 74962745 74962745 G A GALR1 Missense_Mutation p.D81N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 18 8370887 8370887 G A PTPRM Splice_Site p.X1019_splice 0.37 TCGA-EE-A2MD-06 18 9255997 9255997 A C ANKRD12 Missense_Mutation p.H911P 0.30 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-EE-A2MD-06 19 10088358 10088358 C T COL5A3 Missense_Mutation p.G1013D 0.29 probably_damaging(0.931) TCGA-EE-A2MD-06 19 10131966 10131966 A G RDH8 Missense_Mutation p.E211G 0.32 tolerated(0.14) possibly_damaging(0.543) TCGA-EE-A2MD-06 19 10132089 10132089 G A RDH8 Missense_Mutation p.G252E 0.21 tolerated(0.06) probably_damaging(0.984) TCGA-EE-A2MD-06 19 10246816 10246816 G A DNMT1 Missense_Mutation p.P1546L 0.20 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2MD-06 19 10369321 10369321 C T MRPL4 Silent p.A233A 0.31 TCGA-EE-A2MD-06 19 10741781 10741781 C T SLC44A2 Silent p.P98P 0.34 TCGA-EE-A2MD-06 19 11240220 11240220 C T LDLR Silent p.F807F 0.24 TCGA-EE-A2MD-06 19 11565576 11565576 T C ELAVL3 Missense_Mutation p.N290S 0.51 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A2MD-06 19 12958443 12958443 C T MAST1 Missense_Mutation p.S169F 0.27 tolerated(0.07) benign(0.225) TCGA-EE-A2MD-06 19 13058990 13058990 G A RAD23A Splice_Site p.X79_splice 0.30 TCGA-EE-A2MD-06 19 15166855 15166855 C T CASP14 Silent p.N228N 0.36 TCGA-EE-A2MD-06 19 15590191 15590191 G A PGLYRP2 5'UTR 0.47 TCGA-EE-A2MD-06 19 15648426 15648426 C T CYP4F22 Silent p.L168L 0.23 TCGA-EE-A2MD-06 19 15739113 15739113 G A CYP4F8 Intron 0.31 TCGA-EE-A2MD-06 19 15752225 15752225 G A CYP4F3 Intron 0.35 TCGA-EE-A2MD-06 19 15758116 15758116 G A CYP4F3 Silent p.E169E 0.19 TCGA-EE-A2MD-06 19 15795991 15795991 C T CYP4F12 Missense_Mutation p.P367S 0.27 tolerated(0.34) benign(0.023) TCGA-EE-A2MD-06 19 1581157 1581157 G A MBD3 Missense_Mutation p.P204L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 19 16545335 16545335 G A EPS15L1 Intron 0.35 TCGA-EE-A2MD-06 19 16860421 16860421 G A NWD1 Missense_Mutation p.G323E 0.26 tolerated(0.29) benign(0.209) TCGA-EE-A2MD-06 19 17370418 17370418 C T USHBP1 Missense_Mutation p.E298K 0.31 tolerated(0.05) benign(0.393) TCGA-EE-A2MD-06 19 17664478 17664478 C T FAM129C 3'UTR 0.43 TCGA-EE-A2MD-06 19 17741529 17741529 C T UNC13A Silent p.L1153L 0.37 TCGA-EE-A2MD-06 19 18092692 18092692 G A KCNN1 Missense_Mutation p.D225N 0.35 deleterious(0.05) benign(0.044) TCGA-EE-A2MD-06 19 18368548 18368548 G A KIAA1683 Silent p.H1182H 0.25 TCGA-EE-A2MD-06 19 18368549 18368549 T G KIAA1683 Missense_Mutation p.H1182P 0.25 tolerated(0.3) benign(0.145) TCGA-EE-A2MD-06 19 19135663 19135663 G A SUGP2 Silent p.I498I 0.28 TCGA-EE-A2MD-06 19 19257591 19257591 G A MEF2B Missense_Mutation p.P212L 0.19 tolerated(0.13) benign(0.347) TCGA-EE-A2MD-06 19 19675743 19675743 G A PBX4 Silent p.S308S 0.27 TCGA-EE-A2MD-06 19 20229881 20229881 G A ZNF90 Silent p.E506E 0.23 TCGA-EE-A2MD-06 19 20828490 20828490 C T ZNF626 Missense_Mutation p.V76I 0.26 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A2MD-06 19 21299951 21299951 C T ZNF714 Nonsense_Mutation p.Q161* 0.23 TCGA-EE-A2MD-06 19 22154204 22154204 G A ZNF208 Missense_Mutation p.T1211I 0.25 tolerated(0.24) benign(0.045) TCGA-EE-A2MD-06 19 22156338 22156338 C T ZNF208 Missense_Mutation p.E500K 0.30 tolerated(0.56) unknown(0) TCGA-EE-A2MD-06 19 22156654 22156654 C T ZNF208 Silent p.E394E 0.35 TCGA-EE-A2MD-06 19 22363165 22363165 C T ZNF676 Missense_Mutation p.E452K 0.27 tolerated(0.14) probably_damaging(0.996) TCGA-EE-A2MD-06 19 22846700 22846700 G A ZNF492 Missense_Mutation p.E77K 0.28 tolerated(0.27) possibly_damaging(0.636) TCGA-EE-A2MD-06 19 22941261 22941261 C T ZNF99 Missense_Mutation p.E484K 0.22 tolerated(0.62) benign(0.175) TCGA-EE-A2MD-06 19 23159500 23159500 G A ZNF728 Silent p.S213S 0.23 TCGA-EE-A2MD-06 19 2832352 2832352 C T ZNF554 Missense_Mutation p.S102F 0.27 deleterious(0.03) benign(0.023) TCGA-EE-A2MD-06 19 2853213 2853213 C T ZNF555 Nonsense_Mutation p.R384* 0.27 TCGA-EE-A2MD-06 19 2877312 2877312 G A ZNF556 Missense_Mutation p.G119D 0.28 tolerated(0.41) benign(0.038) TCGA-EE-A2MD-06 19 3005716 3005716 C T TLE2 Intron 0.30 TCGA-EE-A2MD-06 19 30934939 30934939 C T ZNF536 Missense_Mutation p.P157L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 19 3118967 3118967 C T GNA11 Silent p.I217I 0.28 TCGA-EE-A2MD-06 19 33095330 33095330 G T ANKRD27 Missense_Mutation p.H832N 0.33 tolerated(0.14) benign(0.322) TCGA-EE-A2MD-06 19 33353099 33353099 G C SLC7A9 Missense_Mutation p.S210C 0.28 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2MD-06 19 34302754 34302754 A G KCTD15 Intron 0.34 TCGA-EE-A2MD-06 19 35556462 35556462 C T HPN Silent p.L309L 0.12 TCGA-EE-A2MD-06 19 35979706 35979706 C T KRTDAP Missense_Mutation p.E42K 0.37 tolerated(0.08) benign(0.214) TCGA-EE-A2MD-06 19 36164394 36164394 G A UPK1A Missense_Mutation p.D139N 0.20 tolerated(0.46) benign(0.01) TCGA-EE-A2MD-06 19 36218489 36218489 C T KMT2B Missense_Mutation p.S1423F 0.27 possibly_damaging(0.795) TCGA-EE-A2MD-06 19 36575559 36575559 C T WDR62 Missense_Mutation p.H519Y 0.42 tolerated(0.19) benign(0.076) TCGA-EE-A2MD-06 19 37210633 37210633 C T ZNF567 Missense_Mutation p.S305L 0.24 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A2MD-06 19 38847151 38847151 C T CATSPERG Missense_Mutation p.P388L 0.25 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MD-06 19 38979928 38979928 G A RYR1 Missense_Mutation p.E1887K 0.45 benign(0.001) TCGA-EE-A2MD-06 19 39017657 39017657 G A RYR1 Missense_Mutation p.E3551K 0.27 benign(0.001) TCGA-EE-A2MD-06 19 39787498 39787498 G A IFNL1 Silent p.G75G 0.31 TCGA-EE-A2MD-06 19 40380328 40380328 T A FCGBP Missense_Mutation p.T3663S 0.32 possibly_damaging(0.621) TCGA-EE-A2MD-06 19 40408395 40408395 C T FCGBP Missense_Mutation p.G1482S 0.19 possibly_damaging(0.842) TCGA-EE-A2MD-06 19 40901188 40901188 G A PRX Missense_Mutation p.P1024L 0.35 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MD-06 19 40993709 40993709 G A SPTBN4 Missense_Mutation p.G92D 0.25 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2MD-06 19 41704646 41704646 C T CYP2S1 Silent p.P229P 0.25 TCGA-EE-A2MD-06 19 41916746 41916746 C T BCKDHA Intron 0.38 TCGA-EE-A2MD-06 19 42224866 42224866 C T CEACAM5 Missense_Mutation p.S599F 0.29 tolerated(0.28) probably_damaging(0.985) TCGA-EE-A2MD-06 19 42794781 42794781 C T CIC Missense_Mutation p.P621S 0.41 benign(0.054) TCGA-EE-A2MD-06 19 42861645 42861645 C T MEGF8 Silent p.S1573S 0.20 TCGA-EE-A2MD-06 19 4298254 4298254 C T TMIGD2 Silent p.Q45Q 0.36 TCGA-EE-A2MD-06 19 43233405 43233405 C T PSG3 Silent p.K371K 0.24 TCGA-EE-A2MD-06 19 43421896 43421896 C T PSG6 Missense_Mutation p.G17R 0.25 tolerated(0.22) possibly_damaging(0.835) TCGA-EE-A2MD-06 19 43579626 43579626 C T PSG2 Missense_Mutation p.E197K 0.30 tolerated(0.93) benign(0.002) TCGA-EE-A2MD-06 19 43679591 43679591 G A PSG5 Missense_Mutation p.S247L 0.26 tolerated(0.08) benign(0.254) TCGA-EE-A2MD-06 19 43699191 43699191 C T PSG4 Missense_Mutation p.R315Q 0.32 tolerated(0.17) possibly_damaging(0.553) TCGA-EE-A2MD-06 19 43702206 43702206 C T PSG4 Missense_Mutation p.E218K 0.48 deleterious(0) probably_damaging(0.966) TCGA-EE-A2MD-06 19 43858083 43858083 C T CD177 Missense_Mutation p.P44L 0.40 deleterious(0.04) benign(0.359) TCGA-EE-A2MD-06 19 43866475 43866475 C T CD177 3'UTR 0.36 TCGA-EE-A2MD-06 19 44471131 44471131 C T ZNF221 Missense_Mutation p.L493F 0.31 tolerated(0.06) possibly_damaging(0.475) TCGA-EE-A2MD-06 19 44635117 44635117 C T ZNF225 Missense_Mutation p.S117F 0.26 deleterious(0.04) benign(0.235) TCGA-EE-A2MD-06 19 44662421 44662421 T G ZNF234 3'UTR 0.27 TCGA-EE-A2MD-06 19 44791596 44791596 G A ZNF235 Silent p.F664F 0.33 TCGA-EE-A2MD-06 19 44932376 44932376 C T ZNF229 3'UTR 0.29 TCGA-EE-A2MD-06 19 44934018 44934018 C T ZNF229 Missense_Mutation p.R313K 0.21 tolerated(0.22) benign(0.058) TCGA-EE-A2MD-06 19 46842805 46842805 C T HIF3A Missense_Mutation p.P646S 0.24 deleterious_low_confidence(0) benign(0.03) TCGA-EE-A2MD-06 19 47535945 47535945 C T NPAS1 Silent p.F159F 0.31 TCGA-EE-A2MD-06 19 48558162 48558162 G A PLA2G4C Missense_Mutation p.P478S 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MD-06 19 49344405 49344405 C T PLEKHA4 Splice_Site p.X635_splice 0.36 TCGA-EE-A2MD-06 19 49812101 49812101 G A SLC6A16 Intron 0.30 TCGA-EE-A2MD-06 19 49965880 49965880 G A ALDH16A1 Silent p.R322R 0.31 TCGA-EE-A2MD-06 19 50149840 50149840 C T SCAF1 Missense_Mutation p.P107S 0.37 unknown(0) TCGA-EE-A2MD-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.31 TCGA-EE-A2MD-06 19 50411634 50411634 G A NUP62 Silent p.I477I 0.31 TCGA-EE-A2MD-06 19 50655885 50655885 C T IZUMO2 Missense_Mutation p.R216Q 0.32 deleterious(0.02) benign(0.417) TCGA-EE-A2MD-06 19 50795520 50795520 C T MYH14 Silent p.A1710A 0.73 TCGA-EE-A2MD-06 19 50827028 50827028 G A KCNC3 Silent p.L394L 0.38 TCGA-EE-A2MD-06 19 50964891 50964891 C T MYBPC2 Silent p.T1008T 0.27 TCGA-EE-A2MD-06 19 51358175 51358175 C T KLK3 5'UTR 0.21 TCGA-EE-A2MD-06 19 51525768 51525768 G A KLK11 3'UTR 0.32 TCGA-EE-A2MD-06 19 51527411 51527411 G A KLK11 Missense_Mutation p.S150L 0.20 tolerated(0.11) benign(0.269) TCGA-EE-A2MD-06 19 51563169 51563169 G A KLK13 Nonsense_Mutation p.Q141* 0.26 TCGA-EE-A2MD-06 19 51671589 51671589 T C CTD-3187F8.14 Intron 0.36 TCGA-EE-A2MD-06 19 51729165 51729165 G A CD33 Silent p.P175P 0.32 TCGA-EE-A2MD-06 19 51767195 51767195 C T SIGLECL1 5'UTR 0.41 TCGA-EE-A2MD-06 19 52507036 52507036 T A ZNF615 5'UTR 0.38 TCGA-EE-A2MD-06 19 53994065 53994065 G A ZNF813 Silent p.G193G 0.32 TCGA-EE-A2MD-06 19 54223374 54223374 G A MIR520D RNA 0.29 TCGA-EE-A2MD-06 19 54230225 54230225 C T MIR526A2 RNA 0.25 TCGA-EE-A2MD-06 19 54545553 54545553 G A VSTM1 Silent p.I155I 0.26 TCGA-EE-A2MD-06 19 55086445 55086445 G A LILRA2 Silent p.S200S 0.26 TCGA-EE-A2MD-06 19 55087437 55087437 A G LILRA2 Silent p.Q372Q 0.23 TCGA-EE-A2MD-06 19 55106319 55106319 C T LILRA1 Missense_Mutation p.S87F 0.33 tolerated(0.41) possibly_damaging(0.467) TCGA-EE-A2MD-06 19 55106793 55106793 G A LILRA1 Missense_Mutation p.R196K 0.25 tolerated(0.05) possibly_damaging(0.593) TCGA-EE-A2MD-06 19 55175813 55175813 G A LILRB4 Missense_Mutation p.A178T 0.38 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A2MD-06 19 55175926 55175926 C T LILRB4 Silent p.L215L 0.22 TCGA-EE-A2MD-06 19 55450450 55450450 C T NLRP7 Silent p.Q579Q 0.29 TCGA-EE-A2MD-06 19 55450931 55450931 G A NLRP7 Missense_Mutation p.A419V 0.34 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MD-06 19 55525974 55525974 G A GP6 Silent p.L447L 0.26 TCGA-EE-A2MD-06 19 55556545 55556545 G A RDH13 Missense_Mutation p.P298L 0.39 deleterious(0.02) possibly_damaging(0.448) TCGA-EE-A2MD-06 19 55693103 55693103 G A PTPRH 3'UTR 0.23 TCGA-EE-A2MD-06 19 55817700 55817700 C T BRSK1 Silent p.F657F 0.28 TCGA-EE-A2MD-06 19 56203242 56203242 C T EPN1 Silent p.P381P 0.53 TCGA-EE-A2MD-06 19 56220128 56220128 C T NLRP9 3'UTR 0.50 TCGA-EE-A2MD-06 19 56235485 56235485 C T NLRP9 Missense_Mutation p.D674N 0.38 tolerated(0.43) benign(0.07) TCGA-EE-A2MD-06 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.24 tolerated(0.1) benign(0) TCGA-EE-A2MD-06 19 56466865 56466865 C T NLRP8 Nonsense_Mutation p.Q481* 0.23 TCGA-EE-A2MD-06 19 56490864 56490864 G A NLRP8 Missense_Mutation p.G994E 0.25 tolerated(0.47) benign(0.029) TCGA-EE-A2MD-06 19 56539225 56539225 G A NLRP5 Silent p.R542R 0.25 TCGA-EE-A2MD-06 19 56569775 56569775 G A NLRP5 Missense_Mutation p.G1157R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 19 5680544 5680544 C T C19orf70 5'UTR 0.24 TCGA-EE-A2MD-06 19 57329146 57329146 G A PEG3 Missense_Mutation p.S277F 0.25 deleterious(0) possibly_damaging(0.825) TCGA-EE-A2MD-06 19 57640915 57640915 G A USP29 Missense_Mutation p.G291E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 19 57743539 57743539 G A AURKC Silent p.K81K 0.23 TCGA-EE-A2MD-06 19 58187627 58187627 G A ZSCAN4 Silent p.G38G 0.23 TCGA-EE-A2MD-06 19 58601606 58601606 G A ZSCAN18 Missense_Mutation p.S66F 0.35 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2MD-06 19 58945690 58945690 G A ZNF132 Missense_Mutation p.P374L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 19 59012663 59012663 T C SLC27A5 Missense_Mutation p.N391S 0.37 tolerated(0.1) benign(0.3) TCGA-EE-A2MD-06 19 6667151 6667151 C A TNFSF14 Nonsense_Mutation p.E91* 0.18 TCGA-EE-A2MD-06 19 6682022 6682022 C T C3 Missense_Mutation p.R1427K 0.32 tolerated(0.31) benign(0.043) TCGA-EE-A2MD-06 19 6760879 6760879 G A SH2D3A Silent p.F63F 0.28 TCGA-EE-A2MD-06 19 6904109 6904109 C T EMR1 Silent p.L289L 0.31 TCGA-EE-A2MD-06 19 6984794 6984794 C T EMR4P RNA 0.36 TCGA-EE-A2MD-06 19 757656 757656 C T MISP Missense_Mutation p.P237L 0.56 tolerated(0.25) benign(0.081) TCGA-EE-A2MD-06 19 7830535 7830535 C T CLEC4M Missense_Mutation p.P76S 0.20 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2MD-06 19 7830536 7830536 C T CLEC4M Missense_Mutation p.P76L 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 19 8136957 8136957 C T FBN3 Missense_Mutation p.R2688Q 0.35 deleterious(0.02) possibly_damaging(0.781) TCGA-EE-A2MD-06 19 8319473 8319473 C T CERS4 Silent p.F88F 0.33 TCGA-EE-A2MD-06 19 8841861 8841861 C T OR2Z1 Silent p.S157S 0.31 TCGA-EE-A2MD-06 19 8999533 8999533 C T MUC16 Missense_Mutation p.D13548N 0.20 probably_damaging(0.999) TCGA-EE-A2MD-06 19 8999534 8999534 C T MUC16 Silent p.V13547V 0.21 TCGA-EE-A2MD-06 19 9046066 9046066 C T MUC16 Silent p.G11855G 0.30 TCGA-EE-A2MD-06 19 9061272 9061272 C T MUC16 Missense_Mutation p.R8725K 0.30 unknown(0) TCGA-EE-A2MD-06 19 9063888 9063888 G A MUC16 Missense_Mutation p.S7853F 0.26 unknown(0) TCGA-EE-A2MD-06 19 9065348 9065348 C T MUC16 Silent p.E7366E 0.15 TCGA-EE-A2MD-06 19 9067129 9067129 G A MUC16 Missense_Mutation p.P6773S 0.22 unknown(0) TCGA-EE-A2MD-06 19 9068032 9068032 C T MUC16 Missense_Mutation p.G6472R 0.32 unknown(0) TCGA-EE-A2MD-06 19 9073481 9073481 G A MUC16 Silent p.F4655F 0.31 TCGA-EE-A2MD-06 19 9075932 9075932 C T MUC16 Silent p.V3838V 0.31 TCGA-EE-A2MD-06 19 9077276 9077276 G A MUC16 Silent p.T3390T 0.30 TCGA-EE-A2MD-06 19 9086951 9086951 G A MUC16 Missense_Mutation p.P1622S 0.18 unknown(0) TCGA-EE-A2MD-06 19 9086952 9086952 G A MUC16 Silent p.G1621G 0.18 TCGA-EE-A2MD-06 19 9087822 9087822 C T MUC16 Silent p.K1331K 0.27 TCGA-EE-A2MD-06 19 9088636 9088636 C T MUC16 Missense_Mutation p.G1060E 0.39 unknown(0) TCGA-EE-A2MD-06 19 9237101 9237101 G A OR7G3 Missense_Mutation p.H176Y 0.23 deleterious(0.03) benign(0.015) TCGA-EE-A2MD-06 19 9237102 9237102 G A OR7G3 Silent p.P175P 0.23 TCGA-EE-A2MD-06 19 9267379 9267379 C T ZNF317 Silent p.F39F 0.33 TCGA-EE-A2MD-06 19 9324745 9324745 C T OR7D4 Missense_Mutation p.G257R 0.37 deleterious(0.01) benign(0.25) TCGA-EE-A2MD-06 19 9362289 9362289 G A OR7E24 Silent p.V190V 0.30 TCGA-EE-A2MD-06 19 9492327 9492327 G A ZNF177 Silent p.R440R 0.26 TCGA-EE-A2MD-06 19 9577554 9577554 C T ZNF560 Missense_Mutation p.G690E 0.32 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A2MD-06 19 9579814 9579814 A G ZNF560 Silent p.N193N 0.37 TCGA-EE-A2MD-06 19 9676819 9676819 A C ZNF121 Missense_Mutation p.S324A 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A2MD-06 1 101197031 101197031 C T VCAM1 Silent p.F494F 0.31 TCGA-EE-A2MD-06 1 101198024 101198024 G A VCAM1 Missense_Mutation p.E526K 0.36 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MD-06 1 103352381 103352381 G A COL11A1 Missense_Mutation p.H1614Y 0.16 unknown(0) TCGA-EE-A2MD-06 1 103388896 103388896 G C COL11A1 Missense_Mutation p.P1217R 0.19 unknown(0) TCGA-EE-A2MD-06 1 109395173 109395173 C T AKNAD1 Silent p.K38K 0.42 TCGA-EE-A2MD-06 1 110030320 110030320 C T ATXN7L2 Silent p.I198I 0.52 TCGA-EE-A2MD-06 1 110163683 110163683 C T AMPD2 Silent p.F16F 0.26 TCGA-EE-A2MD-06 1 110255672 110255672 C T GSTM5 Intron 0.67 TCGA-EE-A2MD-06 1 111495478 111495478 G A LRIF1 Intron 0.50 TCGA-EE-A2MD-06 1 114280739 114280739 G A PHTF1 Silent p.F108F 0.20 TCGA-EE-A2MD-06 1 114443028 114443029 - A AP4B1 Intron 0.21 TCGA-EE-A2MD-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.52 tolerated(0.06) benign(0.006) TCGA-EE-A2MD-06 1 117311132 117311132 G A CD2 Silent p.R261R 0.17 TCGA-EE-A2MD-06 1 117984892 117984892 C T MAN1A2 Missense_Mutation p.L299F 0.17 deleterious(0) possibly_damaging(0.809) TCGA-EE-A2MD-06 1 118570916 118570916 G A SPAG17 Silent p.F1237F 0.24 TCGA-EE-A2MD-06 1 11907840 11907840 C T NPPA 5'UTR 0.36 TCGA-EE-A2MD-06 1 119427676 119427676 G A TBX15 Silent p.F390F 0.56 TCGA-EE-A2MD-06 1 119927482 119927482 G A HAO2 Missense_Mutation p.G123S 0.18 tolerated(0.1) possibly_damaging(0.904) TCGA-EE-A2MD-06 1 119958020 119958020 C T HSD3B2 5'UTR 0.21 TCGA-EE-A2MD-06 1 12887141 12887141 G A PRAMEF11 Missense_Mutation p.S239F 0.27 tolerated(0.15) possibly_damaging(0.89) TCGA-EE-A2MD-06 1 12954982 12954982 G A PRAMEF10 Nonsense_Mutation p.Q101* 0.52 TCGA-EE-A2MD-06 1 1342368 1342368 C T MRPL20 Missense_Mutation p.R40K 0.46 tolerated(0.72) benign(0.025) TCGA-EE-A2MD-06 1 142713260 142713260 C T RP11-417J8.6 RNA 0.31 TCGA-EE-A2MD-06 1 143767740 143767740 G A PPIAL4G Missense_Mutation p.R37C 0.20 tolerated_low_confidence(0.16) benign(0.038) TCGA-EE-A2MD-06 1 145539751 145539751 C T ITGA10 Silent p.V1061V 0.36 TCGA-EE-A2MD-06 1 147094133 147094133 C T BCL9 Silent p.P988P 0.32 TCGA-EE-A2MD-06 1 148756460 148756460 G A NBPF16 Missense_Mutation p.E597K 0.12 tolerated(0.09) benign(0.142) TCGA-EE-A2MD-06 1 149879344 149879344 G A SV2A Missense_Mutation p.S529F 0.34 tolerated(0.08) probably_damaging(0.949) TCGA-EE-A2MD-06 1 150471694 150471694 C T TARS2 Silent p.V514V 0.33 TCGA-EE-A2MD-06 1 150722515 150722515 C T CTSS Missense_Mutation p.A254T 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A2MD-06 1 150957108 150957108 G A ANXA9 Missense_Mutation p.R143Q 0.33 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MD-06 1 151204160 151204161 CC A PIP5K1A Frame_Shift_Del p.A84Dfs*2 0.23 TCGA-EE-A2MD-06 1 151748675 151748675 G A TDRKH Nonsense_Mutation p.R372* 0.40 TCGA-EE-A2MD-06 1 152127456 152127456 C T RPTN Missense_Mutation p.E707K 0.31 tolerated(0.17) benign(0.051) TCGA-EE-A2MD-06 1 152188325 152188325 C T HRNR Missense_Mutation p.G1927E 0.09 unknown(0) TCGA-EE-A2MD-06 1 152280808 152280808 C T FLG Missense_Mutation p.G2185E 0.13 probably_damaging(0.931) TCGA-EE-A2MD-06 1 152733053 152733053 C T KPRP Missense_Mutation p.S330F 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MD-06 1 152733215 152733215 C T KPRP Missense_Mutation p.P384L 0.30 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-EE-A2MD-06 1 152785068 152785068 G A LCE1B Missense_Mutation p.G49E 0.35 tolerated_low_confidence(0.07) unknown(0) TCGA-EE-A2MD-06 1 152882513 152882513 G A IVL Silent p.K80K 0.25 TCGA-EE-A2MD-06 1 152882604 152882604 G A IVL Missense_Mutation p.E111K 0.21 tolerated_low_confidence(0.15) unknown(0) TCGA-EE-A2MD-06 1 152944375 152944375 C T SPRR4 Silent p.S3S 0.38 TCGA-EE-A2MD-06 1 153012551 153012551 G A SPRR2D 3'UTR 0.32 TCGA-EE-A2MD-06 1 153122505 153122505 G A SPRR2G Missense_Mutation p.P28S 0.35 unknown(0) TCGA-EE-A2MD-06 1 153271692 153271692 C T PGLYRP3 Silent p.Q248Q 0.31 TCGA-EE-A2MD-06 1 153276351 153276351 G A PGLYRP3 Missense_Mutation p.P171S 0.24 tolerated(0.6) benign(0.034) TCGA-EE-A2MD-06 1 153617696 153617696 C T CHTOP Missense_Mutation p.A233V 0.33 deleterious(0) unknown(0) TCGA-EE-A2MD-06 1 153655028 153655028 C T NPR1 Missense_Mutation p.S409F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 1 154517284 154517284 G A TDRD10 Missense_Mutation p.D271N 0.21 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MD-06 1 154932030 154932030 G A PYGO2 Missense_Mutation p.P149L 0.26 tolerated(0.16) possibly_damaging(0.908) TCGA-EE-A2MD-06 1 155252280 155252280 G A HCN3 Silent p.K119K 0.27 TCGA-EE-A2MD-06 1 155252281 155252281 G A HCN3 Missense_Mutation p.E120K 0.26 deleterious(0) benign(0.105) TCGA-EE-A2MD-06 1 156020207 156020207 G A UBQLN4 Nonsense_Mutation p.Q206* 0.26 TCGA-EE-A2MD-06 1 156437976 156437976 G A MEF2D Missense_Mutation p.P455S 0.28 tolerated(0.41) possibly_damaging(0.685) TCGA-EE-A2MD-06 1 156617345 156617345 C T BCAN Missense_Mutation p.S171F 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MD-06 1 156617346 156617346 C T BCAN Silent p.S171S 0.25 TCGA-EE-A2MD-06 1 157485454 157485454 G A FCRL5 3'UTR 0.28 TCGA-EE-A2MD-06 1 157514669 157514669 C T FCRL5 Missense_Mutation p.E171K 0.37 tolerated(0.91) benign(0.006) TCGA-EE-A2MD-06 1 158059514 158059514 C T KIRREL Missense_Mutation p.P393L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 158389999 158389999 G A OR10K2 Missense_Mutation p.H220Y 0.27 tolerated(0.63) benign(0.005) TCGA-EE-A2MD-06 1 158549368 158549368 T C OR10X1 Missense_Mutation p.I108V 0.31 deleterious(0.01) benign(0.015) TCGA-EE-A2MD-06 1 158597434 158597434 C T SPTA1 Missense_Mutation p.G1882E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 158912139 158912139 C T PYHIN1 Missense_Mutation p.H318Y 0.28 tolerated(0.48) possibly_damaging(0.889) TCGA-EE-A2MD-06 1 159176200 159176200 G A DARC Missense_Mutation p.G326E 0.32 deleterious(0.04) benign(0.281) TCGA-EE-A2MD-06 1 159176211 159176211 C T DARC Missense_Mutation p.H330Y 0.27 tolerated(0.12) possibly_damaging(0.781) TCGA-EE-A2MD-06 1 159275794 159275794 G A FCER1A Silent p.Q116Q 0.33 TCGA-EE-A2MD-06 1 159283490 159283490 G A OR10J3 Silent p.G320G 0.32 TCGA-EE-A2MD-06 1 159283508 159283508 C T OR10J3 Missense_Mutation p.M314I 0.27 tolerated(0.21) benign(0.006) TCGA-EE-A2MD-06 1 159410279 159410279 G A OR10J1 Missense_Mutation p.R244Q 0.32 tolerated(0.16) benign(0.091) TCGA-EE-A2MD-06 1 159410280 159410280 G A OR10J1 Silent p.R244R 0.32 TCGA-EE-A2MD-06 1 159558529 159558529 G A APCS 3'UTR 0.28 TCGA-EE-A2MD-06 1 159777981 159777981 C T FCRL6 Silent p.L22L 0.34 TCGA-EE-A2MD-06 1 160012041 160012041 C T KCNJ10 Silent p.G94G 0.39 TCGA-EE-A2MD-06 1 160105045 160105045 C T ATP1A2 Missense_Mutation p.P692L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 160523613 160523613 C T CD84 Intron 0.38 TCGA-EE-A2MD-06 1 160765974 160765974 C T LY9 5'UTR 0.36 TCGA-EE-A2MD-06 1 161018662 161018662 C T ARHGAP30 Missense_Mutation p.E717K 0.35 tolerated_low_confidence(0.5) benign(0.002) TCGA-EE-A2MD-06 1 16386022 16386022 C G FAM131C Missense_Mutation p.E177Q 0.27 tolerated(0.3) benign(0.443) TCGA-EE-A2MD-06 1 164790786 164790786 C T PBX1 Missense_Mutation p.R375C 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-EE-A2MD-06 1 16528960 16528960 G A ARHGEF19 Missense_Mutation p.L673F 0.27 tolerated(0.24) benign(0.004) TCGA-EE-A2MD-06 1 166959042 166959042 G A MAEL Silent p.K67K 0.23 TCGA-EE-A2MD-06 1 166959043 166959043 G A MAEL Missense_Mutation p.D68N 0.25 tolerated(0.51) benign(0.002) TCGA-EE-A2MD-06 1 167097246 167097246 G T DUSP27 Missense_Mutation p.G960W 0.24 deleterious(0) possibly_damaging(0.892) TCGA-EE-A2MD-06 1 169439219 169439219 G A SLC19A2 Missense_Mutation p.A338V 0.38 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MD-06 1 169582930 169582930 G A SELP Silent p.A161A 0.41 TCGA-EE-A2MD-06 1 169697258 169697258 G A SELE Missense_Mutation p.S407F 0.29 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A2MD-06 1 170501292 170501292 G A GORAB Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.043) TCGA-EE-A2MD-06 1 171621335 171621335 C T MYOC Silent p.E139E 0.29 TCGA-EE-A2MD-06 1 171678874 171678874 C T VAMP4 Silent p.S92S 0.25 TCGA-EE-A2MD-06 1 173010482 173010482 G A TNFSF18 3'UTR 0.23 TCGA-EE-A2MD-06 1 175331828 175331828 C T TNR Missense_Mutation p.S942N 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 1 175372391 175372391 G A TNR Silent p.Y287Y 0.40 TCGA-EE-A2MD-06 1 175375867 175375867 C T TNR 5'UTR 0.34 TCGA-EE-A2MD-06 1 176913084 176913084 C T ASTN1 Missense_Mutation p.E774K 0.25 deleterious(0) benign(0.384) TCGA-EE-A2MD-06 1 177226260 177226260 G A BRINP2 Intron 0.28 TCGA-EE-A2MD-06 1 178490287 178490287 G A TEX35 Intron 0.27 TCGA-EE-A2MD-06 1 179084119 179084119 T C ABL2 Silent p.P485P 0.28 TCGA-EE-A2MD-06 1 179398701 179398701 G A AXDND1 Missense_Mutation p.E427K 0.30 deleterious(0.02) possibly_damaging(0.636) TCGA-EE-A2MD-06 1 179460692 179460692 C T AXDND1 Missense_Mutation p.S704F 0.28 deleterious(0.03) benign(0.052) TCGA-EE-A2MD-06 1 179983057 179983065 GTTCGAGAA - CEP350 In_Frame_Del p.S491_S493del 0.30 TCGA-EE-A2MD-06 1 179989379 179989379 C T CEP350 Missense_Mutation p.R824C 0.32 probably_damaging(0.97) TCGA-EE-A2MD-06 1 181708310 181708310 G A CACNA1E Missense_Mutation p.D1214N 0.25 deleterious(0.04) probably_damaging(0.959) TCGA-EE-A2MD-06 1 182856422 182856422 C T DHX9 Silent p.S1222S 0.33 TCGA-EE-A2MD-06 1 183155554 183155554 T A LAMC2 Missense_Mutation p.S23T 0.38 tolerated(0.09) benign(0.075) TCGA-EE-A2MD-06 1 183909790 183909790 A G COLGALT2 Missense_Mutation p.L510P 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 186008000 186008000 C T HMCN1 Missense_Mutation p.S1964F 0.25 probably_damaging(0.998) TCGA-EE-A2MD-06 1 196928202 196928202 G A CFHR2 Missense_Mutation p.E269K 0.29 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MD-06 1 197009727 197009727 T C F13B Missense_Mutation p.Y626C 0.36 tolerated(0.11) benign(0.003) TCGA-EE-A2MD-06 1 197026196 197026196 G A F13B Missense_Mutation p.S373L 0.23 tolerated(0.46) benign(0.127) TCGA-EE-A2MD-06 1 197071057 197071057 G A ASPM Nonsense_Mutation p.R2442* 0.31 TCGA-EE-A2MD-06 1 197390665 197390665 C T CRB1 Silent p.F569F 0.27 TCGA-EE-A2MD-06 1 20021023 20021023 G A TMCO4 Silent p.F468F 0.33 TCGA-EE-A2MD-06 1 200818296 200818296 C T CAMSAP2 Missense_Mutation p.P800L 0.36 deleterious(0.01) benign(0.162) TCGA-EE-A2MD-06 1 200878057 200878057 G A C1orf106 Nonsense_Mutation p.W258* 0.35 TCGA-EE-A2MD-06 1 201860616 201860616 C T SHISA4 Missense_Mutation p.P156L 0.29 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MD-06 1 201868835 201868835 C T LMOD1 Missense_Mutation p.E436K 0.24 probably_damaging(0.998) TCGA-EE-A2MD-06 1 201972423 201972423 C T RNPEP Silent p.L495L 0.26 TCGA-EE-A2MD-06 1 202915711 202915711 G A ADIPOR1 Missense_Mutation p.P96S 0.19 tolerated(0.36) benign(0.002) TCGA-EE-A2MD-06 1 204923330 204923330 G A NFASC Missense_Mutation p.R77Q 0.19 deleterious(0) possibly_damaging(0.625) TCGA-EE-A2MD-06 1 205034298 205034298 G A CNTN2 Missense_Mutation p.D535N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 205273169 205273169 G A NUAK2 Silent p.I432I 0.39 TCGA-EE-A2MD-06 1 205277745 205277745 G A NUAK2 Silent p.F156F 0.24 TCGA-EE-A2MD-06 1 205308473 205308473 C T KLHDC8A Nonsense_Mutation p.W202* 0.32 TCGA-EE-A2MD-06 1 205497015 205497015 G A CDK18 Missense_Mutation p.E305K 0.27 tolerated(0.13) benign(0.02) TCGA-EE-A2MD-06 1 205902149 205902149 G A SLC26A9 Silent p.P63P 0.33 TCGA-EE-A2MD-06 1 206225064 206225064 C T AVPR1B Silent p.F208F 0.44 TCGA-EE-A2MD-06 1 207307841 207307841 G A C4BPA Missense_Mutation p.D393N 0.31 tolerated(0.07) possibly_damaging(0.496) TCGA-EE-A2MD-06 1 207758215 207758215 C T CR1 Missense_Mutation p.R1842C 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A2MD-06 1 207890857 207890857 G A CR1L Missense_Mutation p.G488E 0.24 tolerated(0.84) benign(0.12) TCGA-EE-A2MD-06 1 209785559 209785559 A T CAMK1G Missense_Mutation p.K446N 0.21 tolerated_low_confidence(0.36) benign(0.004) TCGA-EE-A2MD-06 1 209785560 209785560 C T CAMK1G Nonsense_Mutation p.Q447* 0.20 TCGA-EE-A2MD-06 1 209806442 209806442 G A LAMB3 Missense_Mutation p.P201S 0.39 tolerated(0.28) benign(0.243) TCGA-EE-A2MD-06 1 209879240 209879240 G A HSD11B1 Missense_Mutation p.G58E 0.12 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2MD-06 1 210194504 210194504 C T SYT14 Missense_Mutation p.S161F 0.21 deleterious(0.02) benign(0.358) TCGA-EE-A2MD-06 1 210637944 210637944 C T HHAT Missense_Mutation p.P319S 0.36 tolerated(0.09) possibly_damaging(0.814) TCGA-EE-A2MD-06 1 211487014 211487014 C T RCOR3 Silent p.P522P 0.28 TCGA-EE-A2MD-06 1 21546555 21546555 G A ECE1 Missense_Mutation p.R736C 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 215777493 215777493 C T KCTD3 Silent p.I386I 0.24 TCGA-EE-A2MD-06 1 215960078 215960078 C T USH2A Missense_Mutation p.E3441K 0.30 benign(0.04) TCGA-EE-A2MD-06 1 21940530 21940530 G A RAP1GAP Missense_Mutation p.S179L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 220312353 220312353 A G IARS2 Missense_Mutation p.R727G 0.42 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MD-06 1 220955232 220955232 C A MARC2 Silent p.R333R 0.28 TCGA-EE-A2MD-06 1 220970051 220970051 C T MARC1 Silent p.F172F 0.26 TCGA-EE-A2MD-06 1 221875831 221875831 A G DUSP10 Missense_Mutation p.F458L 0.26 tolerated(0.26) probably_damaging(0.985) TCGA-EE-A2MD-06 1 223465812 223465812 G A SUSD4 Silent p.I110I 0.23 TCGA-EE-A2MD-06 1 227968262 227968262 C T SNAP47 Missense_Mutation p.A428V 0.41 deleterious(0.02) possibly_damaging(0.535) TCGA-EE-A2MD-06 1 228033728 228033728 G A PRSS38 Missense_Mutation p.R267Q 0.37 tolerated(0.23) possibly_damaging(0.477) TCGA-EE-A2MD-06 1 228473846 228473846 C T OBSCN Silent p.F3453F 0.35 TCGA-EE-A2MD-06 1 228487623 228487623 G A OBSCN Silent p.K4505K 0.29 TCGA-EE-A2MD-06 1 233807367 233807367 G A KCNK1 3'UTR 0.20 TCGA-EE-A2MD-06 1 235377134 235377134 G A ARID4B Silent p.V597V 0.31 TCGA-EE-A2MD-06 1 235915467 235915467 G A LYST Missense_Mutation p.P2489S 0.20 tolerated(0.16) probably_damaging(0.918) TCGA-EE-A2MD-06 1 236736086 236736086 G A HEATR1 Missense_Mutation p.P1168S 0.31 tolerated(0.15) benign(0.097) TCGA-EE-A2MD-06 1 236912487 236912487 C T ACTN2 Missense_Mutation p.P527S 0.26 deleterious(0.01) benign(0.154) TCGA-EE-A2MD-06 1 237777442 237777442 G A RYR2 Missense_Mutation p.V1672M 0.28 probably_damaging(0.999) TCGA-EE-A2MD-06 1 240492397 240492397 G A FMN2 Missense_Mutation p.E1413K 0.26 possibly_damaging(0.667) TCGA-EE-A2MD-06 1 2435905 2435905 C T PLCH2 3'UTR 0.44 TCGA-EE-A2MD-06 1 245848730 245848730 G A KIF26B Silent p.G815G 0.31 TCGA-EE-A2MD-06 1 246078853 246078853 G A SMYD3 Silent p.F264F 0.23 TCGA-EE-A2MD-06 1 247588833 247588833 G A NLRP3 Silent p.K696K 0.12 TCGA-EE-A2MD-06 1 247695664 247695664 G A OR2C3 Silent p.S50S 0.36 TCGA-EE-A2MD-06 1 248004784 248004784 C T OR11L1 Missense_Mutation p.G139R 0.23 tolerated(0.83) benign(0) TCGA-EE-A2MD-06 1 248223987 248223987 G A OR2L3 Missense_Mutation p.E2K 0.29 tolerated(0.12) possibly_damaging(0.616) TCGA-EE-A2MD-06 1 248308964 248308964 G A OR2M5 Missense_Mutation p.R172Q 0.26 tolerated(0.14) benign(0.023) TCGA-EE-A2MD-06 1 248512472 248512472 G A OR14C36 Silent p.V132V 0.35 TCGA-EE-A2MD-06 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.35 TCGA-EE-A2MD-06 1 248616432 248616432 G A OR2T2 Missense_Mutation p.E112K 0.12 deleterious(0.01) benign(0.027) TCGA-EE-A2MD-06 1 26138011 26138011 C T SEPN1 Silent p.I359I 0.23 TCGA-EE-A2MD-06 1 26900643 26900643 C G RPS6KA1 Missense_Mutation p.S729C 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 27121059 27121059 C T PIGV Silent p.F178F 0.26 TCGA-EE-A2MD-06 1 27216268 27216268 A C GPN2 Missense_Mutation p.F107C 0.48 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A2MD-06 1 27618754 27618754 C T WDTC1 Silent p.D176D 0.18 TCGA-EE-A2MD-06 1 27706489 27706489 G A CD164L2 3'UTR 0.21 TCGA-EE-A2MD-06 1 27706566 27706566 C T CD164L2 Missense_Mutation p.A165T 0.45 tolerated(0.1) benign(0.043) TCGA-EE-A2MD-06 1 27706567 27706567 C T CD164L2 Silent p.K164K 0.43 TCGA-EE-A2MD-06 1 28527822 28527822 C T DNAJC8 Silent p.K233K 0.48 TCGA-EE-A2MD-06 1 29029018 29029018 C T GMEB1 Missense_Mutation p.L233F 0.25 tolerated(0.07) benign(0.042) TCGA-EE-A2MD-06 1 29642641 29642641 C T PTPRU Missense_Mutation p.S1174F 0.17 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MD-06 1 32259468 32259468 G A SPOCD1 Missense_Mutation p.S805F 0.38 tolerated(0.66) benign(0.013) TCGA-EE-A2MD-06 1 32265028 32265028 A G SPOCD1 Silent p.R614R 0.27 TCGA-EE-A2MD-06 1 34498195 34498195 C T CSMD2 Missense_Mutation p.V133I 0.56 tolerated(0.17) possibly_damaging(0.566) TCGA-EE-A2MD-06 1 34666597 34666597 C T C1orf94 Nonsense_Mutation p.R412* 0.42 TCGA-EE-A2MD-06 1 35851166 35851166 T C ZMYM4 Missense_Mutation p.Y565H 0.26 tolerated(0.25) possibly_damaging(0.764) TCGA-EE-A2MD-06 1 36439011 36439011 C T AGO3 Missense_Mutation p.P186L 0.42 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A2MD-06 1 3668986 3668986 G A CCDC27 5'UTR 0.42 TCGA-EE-A2MD-06 1 36941239 36941239 G A CSF3R Missense_Mutation p.P34S 0.49 tolerated(0.19) benign(0.041) TCGA-EE-A2MD-06 1 36941240 36941240 G A CSF3R Silent p.A33A 0.49 TCGA-EE-A2MD-06 1 37307391 37307391 C T GRIK3 Silent p.G492G 0.37 TCGA-EE-A2MD-06 1 37307518 37307518 C T GRIK3 Missense_Mutation p.R450Q 0.41 deleterious(0.01) benign(0.26) TCGA-EE-A2MD-06 1 38006221 38006221 C T SNIP1 Missense_Mutation p.E155K 0.32 tolerated(0.1) possibly_damaging(0.778) TCGA-EE-A2MD-06 1 39901420 39901420 C T MACF1 Missense_Mutation p.S3930F 0.48 probably_damaging(0.993) TCGA-EE-A2MD-06 1 40557736 40557736 A G PPT1 Missense_Mutation p.S115P 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 40980291 40980291 C T EXO5 Silent p.F25F 0.54 TCGA-EE-A2MD-06 1 41976638 41976638 G A HIVEP3 Silent p.A2235A 0.53 TCGA-EE-A2MD-06 1 43830919 43830919 G A ELOVL1 Missense_Mutation p.R59C 0.48 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MD-06 1 43909141 43909141 A T SZT2 Missense_Mutation p.D2816V 0.50 tolerated(0.24) benign(0.021) TCGA-EE-A2MD-06 1 43909142 43909142 C T SZT2 Silent p.D2816D 0.50 TCGA-EE-A2MD-06 1 44069127 44069127 C T PTPRF Missense_Mutation p.S794F 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 1 44595472 44595472 G A KLF17 Missense_Mutation p.V177M 0.41 tolerated(1) benign(0.001) TCGA-EE-A2MD-06 1 45226020 45226020 G A KIF2C Missense_Mutation p.R479Q 0.34 deleterious(0) probably_damaging(0.909) TCGA-EE-A2MD-06 1 45965908 45965908 C T MMACHC 5'UTR 0.71 TCGA-EE-A2MD-06 1 46976761 46976761 C T DMBX1 Missense_Mutation p.P163L 0.42 tolerated(0.06) benign(0.003) TCGA-EE-A2MD-06 1 47399937 47399937 G A CYP4A11 Silent p.I333I 0.23 TCGA-EE-A2MD-06 1 47402383 47402383 G A CYP4A11 Silent p.L155L 0.40 TCGA-EE-A2MD-06 1 47610323 47610323 C T CYP4A22 Silent p.I333I 0.08 TCGA-EE-A2MD-06 1 47611902 47611902 G A CYP4A22 Intron 0.23 TCGA-EE-A2MD-06 1 48697256 48697256 C G SLC5A9 Missense_Mutation p.T242R 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 1 50575524 50575524 A C ELAVL4 Intron 0.56 TCGA-EE-A2MD-06 1 51032830 51032830 C A FAF1 Missense_Mutation p.C396F 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MD-06 1 52850381 52850381 G A ORC1 Silent p.I532I 0.28 TCGA-EE-A2MD-06 1 55063089 55063089 G A ACOT11 Splice_Site p.X255_splice 0.31 TCGA-EE-A2MD-06 1 57538053 57538053 G A DAB1 Missense_Mutation p.S114F 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 1 59002379 59002379 T A OMA1 Missense_Mutation p.N179Y 0.22 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2MD-06 1 59002382 59002382 G A OMA1 Missense_Mutation p.P178S 0.21 deleterious(0.03) benign(0.234) TCGA-EE-A2MD-06 1 59805663 59805663 C T FGGY Nonsense_Mutation p.R79* 0.51 TCGA-EE-A2MD-06 1 62733963 62733963 C T KANK4 Missense_Mutation p.E743K 0.53 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A2MD-06 1 62733995 62733995 C T KANK4 Missense_Mutation p.G732E 0.26 tolerated(0.71) probably_damaging(0.972) TCGA-EE-A2MD-06 1 65296648 65296648 A T RAVER2 Nonsense_Mutation p.K673* 0.51 TCGA-EE-A2MD-06 1 74819696 74819696 C T FPGT-TNNI3K Missense_Mutation p.R468C 0.56 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 1 75037470 75037470 C T C1orf173 Silent p.A1308A 0.25 TCGA-EE-A2MD-06 1 75681480 75681480 C T SLC44A5 Missense_Mutation p.E563K 0.28 deleterious(0) probably_damaging(0.938) TCGA-EE-A2MD-06 1 75805292 75805292 C T SLC44A5 Missense_Mutation p.D26N 0.48 tolerated(0.39) benign(0.002) TCGA-EE-A2MD-06 1 7724243 7724243 G A CAMTA1 Missense_Mutation p.E546K 0.67 deleterious_low_confidence(0.01) benign(0.16) TCGA-EE-A2MD-06 1 77528893 77528893 G A ST6GALNAC5 3'UTR 0.62 TCGA-EE-A2MD-06 1 77987620 77987620 G A AK5 Missense_Mutation p.G474R 0.30 deleterious(0.03) benign(0.043) TCGA-EE-A2MD-06 1 78183733 78183733 C T USP33 Splice_Site p.X611_splice 0.39 TCGA-EE-A2MD-06 1 7886711 7886711 C T PER3 Missense_Mutation p.P702L 0.34 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A2MD-06 1 78958515 78958515 C T PTGFR Silent p.S29S 0.23 TCGA-EE-A2MD-06 1 79383582 79383582 G A ELTD1 Silent p.L539L 0.48 TCGA-EE-A2MD-06 1 79403547 79403547 C T ELTD1 Silent p.R235R 0.27 TCGA-EE-A2MD-06 1 82435023 82435023 C T LPHN2 Silent p.F878F 0.27 TCGA-EE-A2MD-06 1 82456779 82456779 C T LPHN2 Missense_Mutation p.P1388S 0.27 tolerated_low_confidence(0.18) benign(0.228) TCGA-EE-A2MD-06 1 85331711 85331711 C T LPAR3 Silent p.V31V 0.23 TCGA-EE-A2MD-06 1 86046709 86046709 C T CYR61 Silent p.T14T 0.25 TCGA-EE-A2MD-06 1 86951181 86951181 C T CLCA1 Silent p.F297F 0.19 TCGA-EE-A2MD-06 1 89476671 89476671 C T GBP3 Silent p.S426S 0.20 TCGA-EE-A2MD-06 1 92262983 92262983 G A TGFBR3 Missense_Mutation p.S36F 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A2MD-06 1 92442946 92442946 T A BRDT Missense_Mutation p.I322N 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 1 94526287 94526287 G A ABCA4 Missense_Mutation p.P656S 0.47 deleterious(0.01) possibly_damaging(0.687) TCGA-EE-A2MD-06 1 95538398 95538398 G A ALG14 Silent p.I19I 0.49 TCGA-EE-A2MD-06 1 98205983 98205983 C T DPYD Missense_Mutation p.D96N 0.36 deleterious(0.04) possibly_damaging(0.594) TCGA-EE-A2MD-06 1 99418669 99418669 G A LPPR5 Missense_Mutation p.S193F 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 20 1616917 1616917 G A SIRPG Missense_Mutation p.S222F 0.33 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A2MD-06 20 19665797 19665797 C T SLC24A3 Silent p.A372A 0.34 TCGA-EE-A2MD-06 20 21314391 21314391 T C XRN2 Missense_Mutation p.V328A 0.30 deleterious(0.01) benign(0.017) TCGA-EE-A2MD-06 20 21328863 21328863 C T XRN2 Missense_Mutation p.P582L 0.31 tolerated(0.28) benign(0.027) TCGA-EE-A2MD-06 20 23064997 23064997 C T CD93 Silent p.A611A 0.30 TCGA-EE-A2MD-06 20 2843460 2843460 C T VPS16 Missense_Mutation p.S404F 0.35 tolerated(0.06) benign(0.393) TCGA-EE-A2MD-06 20 29847306 29847306 G A DEFB115 Silent p.R46R 0.22 TCGA-EE-A2MD-06 20 3065240 3065240 C T AVP Silent p.R27R 0.27 TCGA-EE-A2MD-06 20 31672707 31672707 C T BPIFB4 Silent p.I229I 0.50 TCGA-EE-A2MD-06 20 3214775 3214775 G A SLC4A11 Silent p.L202L 0.36 TCGA-EE-A2MD-06 20 32264940 32264940 G A E2F1 Missense_Mutation p.P346L 0.25 tolerated(0.15) possibly_damaging(0.597) TCGA-EE-A2MD-06 20 32883212 32883212 G A AHCY Silent p.L70L 0.19 TCGA-EE-A2MD-06 20 3297412 3297412 G A C20orf194 Silent p.S499S 0.28 TCGA-EE-A2MD-06 20 33589751 33589751 G A MYH7B Missense_Mutation p.E1935K 0.29 possibly_damaging(0.742) TCGA-EE-A2MD-06 20 34095953 34095953 C T CEP250 Silent p.A2280A 0.29 TCGA-EE-A2MD-06 20 34095954 34095954 C T CEP250 Missense_Mutation p.R2281W 0.30 benign(0.003) TCGA-EE-A2MD-06 20 34596326 34596326 G A CNBD2 Missense_Mutation p.G360R 0.36 tolerated(0.2) benign(0.022) TCGA-EE-A2MD-06 20 35219911 35219911 G A TGIF2 3'UTR 0.31 TCGA-EE-A2MD-06 20 35312868 35312868 G A NDRG3 Missense_Mutation p.P111S 0.41 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A2MD-06 20 3677938 3677938 G A SIGLEC1 Missense_Mutation p.A725V 0.25 tolerated(0.41) benign(0.079) TCGA-EE-A2MD-06 20 36841513 36841513 G A KIAA1755 Silent p.S1178S 0.33 TCGA-EE-A2MD-06 20 36999955 36999955 G A LBP Missense_Mutation p.G417R 0.20 deleterious(0.03) possibly_damaging(0.877) TCGA-EE-A2MD-06 20 39978916 39978916 G A LPIN3 Silent p.E327E 0.22 TCGA-EE-A2MD-06 20 41306568 41306568 C T PTPRT Missense_Mutation p.R364Q 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 20 41420048 41420048 G A PTPRT Silent p.L91L 0.32 TCGA-EE-A2MD-06 20 42328486 42328486 G A MYBL2 Silent p.S251S 0.39 TCGA-EE-A2MD-06 20 43030011 43030011 G A HNF4A 5'UTR 0.36 TCGA-EE-A2MD-06 20 44663592 44663592 G A SLC12A5 Missense_Mutation p.G43S 0.16 tolerated(0.06) benign(0.178) TCGA-EE-A2MD-06 20 45801394 45801394 C T EYA2 Silent p.A359A 0.73 TCGA-EE-A2MD-06 20 56227561 56227561 G A PMEPA1 Missense_Mutation p.P138S 0.58 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MD-06 20 57599799 57599799 G A TUBB1 Silent p.T439T 0.60 TCGA-EE-A2MD-06 20 6025272 6025272 C T LRRN4 Silent p.S305S 0.32 TCGA-EE-A2MD-06 20 8637904 8637904 C T PLCB1 Missense_Mutation p.P223L 0.32 deleterious(0) benign(0.266) TCGA-EE-A2MD-06 20 9319670 9319670 C T PLCB4 Missense_Mutation p.P119S 0.33 tolerated(0.63) benign(0.068) TCGA-EE-A2MD-06 20 9543585 9543585 C T PAK7 Missense_Mutation p.M523I 0.32 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MD-06 21 10906861 10906861 G A TPTE 3'UTR 0.11 TCGA-EE-A2MD-06 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.10 tolerated(0.06) benign(0.063) TCGA-EE-A2MD-06 21 10916422 10916422 G A TPTE Silent p.L408L 0.06 TCGA-EE-A2MD-06 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.08 deleterious(0.01) benign(0.021) TCGA-EE-A2MD-06 21 10934955 10934955 G A TPTE Nonsense_Mutation p.R280* 0.09 TCGA-EE-A2MD-06 21 11026821 11026821 G A BAGE2 RNA 0.08 TCGA-EE-A2MD-06 21 15399841 15399841 C T AP001347.6 RNA 0.31 TCGA-EE-A2MD-06 21 15399842 15399842 C T AP001347.6 RNA 0.30 TCGA-EE-A2MD-06 21 15592007 15592007 C T RBM11 Missense_Mutation p.R74C 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MD-06 21 17443452 17443452 T C LINC00478 RNA 0.29 TCGA-EE-A2MD-06 21 19685373 19685373 G A TMPRSS15 Missense_Mutation p.T685M 0.33 tolerated(0.45) benign(0.017) TCGA-EE-A2MD-06 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2MD-06 21 31768640 31768640 C T KRTAP13-1 Missense_Mutation p.S79F 0.34 deleterious(0.04) benign(0.35) TCGA-EE-A2MD-06 21 32410548 32410548 G A KRTAP19-8 3'UTR 0.34 TCGA-EE-A2MD-06 21 33954638 33954638 G A AP000275.65 Missense_Mutation p.H252Y 0.25 tolerated_low_confidence(0.33) benign(0.001) TCGA-EE-A2MD-06 21 37650331 37650331 C T DOPEY2 Missense_Mutation p.P1924L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 21 38390383 38390383 G A RIPPLY3 Missense_Mutation p.G150E 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MD-06 21 40191503 40191503 G A ETS2 Nonsense_Mutation p.W296* 0.36 TCGA-EE-A2MD-06 21 40765190 40765190 T A WRB Missense_Mutation p.F145L 0.31 tolerated(0.09) possibly_damaging(0.809) TCGA-EE-A2MD-06 21 43342116 43342116 G A C2CD2 Silent p.L153L 0.24 TCGA-EE-A2MD-06 21 43510455 43510455 G A UMODL1 Missense_Mutation p.E280K 0.21 tolerated(0.14) benign(0.079) TCGA-EE-A2MD-06 21 43710228 43710228 G A ABCG1 Silent p.G443G 0.28 TCGA-EE-A2MD-06 21 43829558 43829558 C T UBASH3A Silent p.S65S 0.17 TCGA-EE-A2MD-06 21 43984842 43984842 C T SLC37A1 Missense_Mutation p.S387L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 21 45861640 45861640 C T TRPM2 Silent p.L1484L 0.34 TCGA-EE-A2MD-06 21 46101782 46101782 C T KRTAP12-1 Missense_Mutation p.R86K 0.16 tolerated(0.11) benign(0.067) TCGA-EE-A2MD-06 21 47412099 47412099 C T COL6A1 Missense_Mutation p.P402S 0.23 tolerated(0.52) unknown(0) TCGA-EE-A2MD-06 22 18028630 18028630 C T CECR2 Missense_Mutation p.P1197L 0.26 deleterious(0) benign(0.392) TCGA-EE-A2MD-06 22 19119524 19119524 G A TSSK2 Silent p.V204V 0.26 TCGA-EE-A2MD-06 22 19221047 19221047 G A CLTCL1 Silent p.L422L 0.20 TCGA-EE-A2MD-06 22 21988447 21988447 T C CCDC116 Missense_Mutation p.F70S 0.30 deleterious(0.03) possibly_damaging(0.821) TCGA-EE-A2MD-06 22 22043086 22043086 C T PPIL2 Missense_Mutation p.R363C 0.35 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MD-06 22 22556510 22556510 G A IGLV11-55 Silent p.E108E 0.32 TCGA-EE-A2MD-06 22 23524071 23524071 C T BCR Silent p.R308R 0.32 TCGA-EE-A2MD-06 22 24579559 24579559 C T SUSD2 Silent p.F128F 0.32 TCGA-EE-A2MD-06 22 25755824 25755824 G A LRP5L Missense_Mutation p.P79L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 22 26219577 26219577 G A MYO18B Missense_Mutation p.R876Q 0.27 tolerated(0.26) benign(0.055) TCGA-EE-A2MD-06 22 26348362 26348362 C T MYO18B Silent p.F1981F 0.14 TCGA-EE-A2MD-06 22 26422462 26422462 G A MYO18B Silent p.L2174L 0.30 TCGA-EE-A2MD-06 22 26694973 26694973 C T SEZ6L Missense_Mutation p.P396S 0.29 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MD-06 22 30682330 30682330 G A GATSL3 Missense_Mutation p.P222L 0.33 tolerated(0.32) benign(0) TCGA-EE-A2MD-06 22 30887684 30887684 G A SEC14L4 Silent p.F319F 0.19 TCGA-EE-A2MD-06 22 31091508 31091508 C T OSBP2 Silent p.F204F 0.27 TCGA-EE-A2MD-06 22 31829903 31829903 G A DRG1 Silent p.V350V 0.27 TCGA-EE-A2MD-06 22 32827390 32827390 G A BPIFC Silent p.T387T 0.26 TCGA-EE-A2MD-06 22 36142011 36142011 G A RBFOX2 Missense_Mutation p.H424Y 0.28 probably_damaging(0.956) TCGA-EE-A2MD-06 22 36587695 36587695 G A APOL4 Missense_Mutation p.P161S 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 22 36661836 36661836 G A APOL1 Silent p.V334V 0.35 TCGA-EE-A2MD-06 22 37326802 37326802 G A CSF2RB Silent p.A314A 0.38 TCGA-EE-A2MD-06 22 37603362 37603362 G A SSTR3 Missense_Mutation p.R161C 0.30 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MD-06 22 38121510 38121510 C T TRIOBP Missense_Mutation p.P983S 0.29 deleterious_low_confidence(0.02) benign(0.104) TCGA-EE-A2MD-06 22 38245382 38245382 G A EIF3L 5'UTR 0.28 TCGA-EE-A2MD-06 22 38323579 38323579 C T MICALL1 Missense_Mutation p.H543Y 0.34 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A2MD-06 22 38508283 38508283 A C PLA2G6 Missense_Mutation p.M769R 0.22 tolerated(0.13) possibly_damaging(0.889) TCGA-EE-A2MD-06 22 38508284 38508284 T A PLA2G6 Missense_Mutation p.M769L 0.25 tolerated(0.2) benign(0.084) TCGA-EE-A2MD-06 22 38565319 38565319 G A PLA2G6 Missense_Mutation p.R39W 0.27 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2MD-06 22 38823739 38823739 C T KCNJ4 Silent p.T133T 0.26 TCGA-EE-A2MD-06 22 38881966 38881966 G A DDX17 Missense_Mutation p.P724S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-EE-A2MD-06 22 39077966 39077966 C T TOMM22 5'UTR 0.48 TCGA-EE-A2MD-06 22 39411611 39411611 A G APOBEC3C Missense_Mutation p.K10R 0.34 tolerated(0.07) benign(0.08) TCGA-EE-A2MD-06 22 39411612 39411612 G A APOBEC3C Silent p.K10K 0.35 TCGA-EE-A2MD-06 22 39428365 39428365 C T APOBEC3D 3'UTR 0.23 TCGA-EE-A2MD-06 22 39530027 39530027 G A CBX7 Missense_Mutation p.P209S 0.29 tolerated(0.3) benign(0.191) TCGA-EE-A2MD-06 22 39530028 39530028 G A CBX7 Silent p.P208P 0.29 TCGA-EE-A2MD-06 22 40140134 40140134 G A ENTHD1 Silent p.S458S 0.23 TCGA-EE-A2MD-06 22 41175070 41175070 G A SLC25A17 Nonsense_Mutation p.Q132* 0.56 TCGA-EE-A2MD-06 22 41735042 41735042 C T ZC3H7B Silent p.L221L 0.29 TCGA-EE-A2MD-06 22 50869685 50869685 C T PPP6R2 Silent p.A404A 0.37 TCGA-EE-A2MD-06 22 51137203 51137203 G A SHANK3 Silent p.V544V 0.09 TCGA-EE-A2MD-06 22 51160137 51160137 C T SHANK3 Silent p.S1308S 0.38 TCGA-EE-A2MD-06 2 100167900 100167900 G A AFF3 3'UTR 0.32 TCGA-EE-A2MD-06 2 100210149 100210149 G A AFF3 Silent p.I683I 0.26 TCGA-EE-A2MD-06 2 100919445 100919445 C T LONRF2 Missense_Mutation p.E287K 0.26 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MD-06 2 102781300 102781300 C T IL1R1 Missense_Mutation p.P43L 0.31 tolerated(0.37) benign(0) TCGA-EE-A2MD-06 2 102968026 102968026 G A IL1RL1 Missense_Mutation p.R439Q 0.40 tolerated(1) benign(0.019) TCGA-EE-A2MD-06 2 103274324 103274324 C T SLC9A2 Silent p.F197F 0.27 TCGA-EE-A2MD-06 2 103317550 103317550 A T SLC9A2 Missense_Mutation p.K536N 0.32 tolerated(0.05) possibly_damaging(0.628) TCGA-EE-A2MD-06 2 107041046 107041046 G A RGPD3 Missense_Mutation p.S1126L 0.30 deleterious(0) probably_damaging(0.916) TCGA-EE-A2MD-06 2 108487530 108487530 G A RGPD4 Missense_Mutation p.D1024N 0.28 deleterious(0.02) possibly_damaging(0.837) TCGA-EE-A2MD-06 2 109371668 109371668 C T RANBP2 Nonsense_Mutation p.Q807* 0.25 TCGA-EE-A2MD-06 2 109421374 109421374 C T CCDC138 Silent p.T255T 0.26 TCGA-EE-A2MD-06 2 109964333 109964333 C T SH3RF3 Silent p.P259P 0.42 TCGA-EE-A2MD-06 2 111881398 111881398 C T BCL2L11 Missense_Mutation p.P26S 0.15 tolerated_low_confidence(0.13) benign(0.099) TCGA-EE-A2MD-06 2 111881399 111881399 C T BCL2L11 Missense_Mutation p.P26L 0.15 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-EE-A2MD-06 2 112705122 112705122 C T MERTK Silent p.S245S 0.20 TCGA-EE-A2MD-06 2 113765561 113765561 C T IL36A Silent p.I139I 0.22 TCGA-EE-A2MD-06 2 113940076 113940076 G A PSD4 Missense_Mutation p.E15K 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MD-06 2 11696643 11696643 C T GREB1 5'UTR 0.24 TCGA-EE-A2MD-06 2 11922483 11922483 C T LPIN1 Missense_Mutation p.P421S 0.25 tolerated(0.17) benign(0.008) TCGA-EE-A2MD-06 2 11922484 11922484 C T LPIN1 Missense_Mutation p.P421L 0.25 deleterious(0.04) benign(0.008) TCGA-EE-A2MD-06 2 119726751 119726751 G A MARCO Missense_Mutation p.R38K 0.32 tolerated(1) benign(0.001) TCGA-EE-A2MD-06 2 121732662 121732662 G A GLI2 Missense_Mutation p.D449N 0.14 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MD-06 2 121989507 121989507 C T TFCP2L1 Silent p.L412L 0.30 TCGA-EE-A2MD-06 2 121989510 121989510 G A TFCP2L1 Silent p.T411T 0.24 TCGA-EE-A2MD-06 2 121989511 121989511 G A TFCP2L1 Missense_Mutation p.T411I 0.25 tolerated(0.06) benign(0.009) TCGA-EE-A2MD-06 2 128370139 128370139 A G MYO7B Missense_Mutation p.H1094R 0.40 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A2MD-06 2 128412413 128412413 C T LIMS2 Missense_Mutation p.G101R 0.31 tolerated(0.23) benign(0.052) TCGA-EE-A2MD-06 2 130738127 130738127 G A RAB6C Missense_Mutation p.G147R 0.28 tolerated_low_confidence(0.06) benign(0.01) TCGA-EE-A2MD-06 2 130785966 130785966 C T FAR2P1 RNA 0.29 TCGA-EE-A2MD-06 2 131520966 131520966 G A AMER3 Missense_Mutation p.D441N 0.29 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A2MD-06 2 131985905 131985905 C T POTEE Silent p.L336L 0.16 TCGA-EE-A2MD-06 2 132480125 132480125 C T C2orf27A 5'UTR 0.39 TCGA-EE-A2MD-06 2 135741363 135741363 C T MAP3K19 Silent p.R1035R 0.27 TCGA-EE-A2MD-06 2 136433040 136433040 C T R3HDM1 Missense_Mutation p.S729L 0.25 deleterious(0) benign(0.06) TCGA-EE-A2MD-06 2 138030160 138030160 G A THSD7B Missense_Mutation p.G775E 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MD-06 2 138163223 138163223 G A THSD7B Missense_Mutation p.M847I 0.31 tolerated(0.87) benign(0.043) TCGA-EE-A2MD-06 2 138414466 138414466 G A THSD7B Silent p.R1405R 0.37 TCGA-EE-A2MD-06 2 141108456 141108456 C T LRP1B Missense_Mutation p.M3934I 0.33 benign(0.019) TCGA-EE-A2MD-06 2 141665489 141665489 C T LRP1B Silent p.G1159G 0.29 TCGA-EE-A2MD-06 2 1457514 1457514 C T TPO Silent p.L177L 0.29 TCGA-EE-A2MD-06 2 1480954 1480954 G A TPO Missense_Mutation p.G306R 0.30 tolerated(0.06) possibly_damaging(0.461) TCGA-EE-A2MD-06 2 149247566 149247566 C T MBD5 Silent p.I1222I 0.26 TCGA-EE-A2MD-06 2 152226541 152226541 G A TNFAIP6 Silent p.E134E 0.24 TCGA-EE-A2MD-06 2 152499129 152499129 G A NEB Missense_Mutation p.P2778S 0.24 possibly_damaging(0.591) TCGA-EE-A2MD-06 2 152512943 152512943 C T NEB Silent p.G2073G 0.22 TCGA-EE-A2MD-06 2 152534213 152534213 C T NEB Missense_Mutation p.E1214K 0.32 probably_damaging(0.985) TCGA-EE-A2MD-06 2 153482056 153482056 G A FMNL2 Missense_Mutation p.D648N 0.18 possibly_damaging(0.728) TCGA-EE-A2MD-06 2 160750531 160750531 C A LY75-CD302 Silent p.G177G 0.29 TCGA-EE-A2MD-06 2 160798468 160798468 G A PLA2R1 Silent p.L1405L 0.32 TCGA-EE-A2MD-06 2 163302565 163302565 G A KCNH7 Missense_Mutation p.P506L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 2 165551054 165551054 G A COBLL1 Missense_Mutation p.P988S 0.25 tolerated(0.06) benign(0.051) TCGA-EE-A2MD-06 2 166188051 166188051 C T SCN2A Silent p.F787F 0.37 TCGA-EE-A2MD-06 2 167108321 167108321 C T SCN9A Silent p.E1131E 0.25 TCGA-EE-A2MD-06 2 167168110 167168110 A G SCN9A Silent p.L53L 0.29 TCGA-EE-A2MD-06 2 167322343 167322343 C T SCN7A Silent p.E273E 0.30 TCGA-EE-A2MD-06 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.42 probably_damaging(0.999) TCGA-EE-A2MD-06 2 168103798 168103798 C T XIRP2 Nonsense_Mutation p.Q1966* 0.31 TCGA-EE-A2MD-06 2 168104261 168104261 C T XIRP2 Missense_Mutation p.T2120I 0.18 benign(0.009) TCGA-EE-A2MD-06 2 168107053 168107053 G A XIRP2 Missense_Mutation p.E3051K 0.35 possibly_damaging(0.487) TCGA-EE-A2MD-06 2 168726220 168726220 G A B3GALT1 Missense_Mutation p.R224K 0.31 tolerated(0.69) benign(0.115) TCGA-EE-A2MD-06 2 168726566 168726566 T C B3GALT1 3'UTR 0.19 TCGA-EE-A2MD-06 2 170460756 170460756 C T PPIG Missense_Mutation p.R41C 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 2 171092559 171092559 C T MYO3B Missense_Mutation p.S221F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 2 179416592 179416592 C T TTN Nonsense_Mutation p.W30345* 0.33 TCGA-EE-A2MD-06 2 179439386 179439393 TAAATGGA - TTN Nonsense_Mutation p.Y23822* 0.23 TCGA-EE-A2MD-06 2 179536836 179536836 G A TTN Missense_Mutation p.H11697Y 0.35 TCGA-EE-A2MD-06 2 179549655 179549655 C T TTN Silent p.K10844K 0.22 TCGA-EE-A2MD-06 2 179554320 179554320 G A TTN Missense_Mutation p.P10617S 0.23 TCGA-EE-A2MD-06 2 179589234 179589234 C T TTN Silent p.P6956P 0.23 TCGA-EE-A2MD-06 2 179594214 179594214 C T TTN Silent p.T6223T 0.40 TCGA-EE-A2MD-06 2 179596691 179596691 A G TTN Silent p.P5637P 0.25 TCGA-EE-A2MD-06 2 179600576 179600576 G A TTN Missense_Mutation p.S4866F 0.27 TCGA-EE-A2MD-06 2 179604434 179604434 G A TTN Missense_Mutation p.S4509F 0.30 TCGA-EE-A2MD-06 2 179604438 179604438 C T TTN Missense_Mutation p.D4508N 0.31 TCGA-EE-A2MD-06 2 179616439 179616439 G A TTN Intron 0.45 TCGA-EE-A2MD-06 2 179621344 179621344 G A TTN Missense_Mutation p.S3620F 0.29 TCGA-EE-A2MD-06 2 179636071 179636071 C T TTN Silent p.L2661L 0.31 TCGA-EE-A2MD-06 2 179645883 179645883 C T TTN Missense_Mutation p.G1163E 0.16 TCGA-EE-A2MD-06 2 179659879 179659879 G A TTN Missense_Mutation p.P339S 0.35 TCGA-EE-A2MD-06 2 179664632 179664632 C T TTN Missense_Mutation p.E197K 0.31 TCGA-EE-A2MD-06 2 179732807 179732807 G A CCDC141 Silent p.L840L 0.27 TCGA-EE-A2MD-06 2 183104855 183104855 G A PDE1A Missense_Mutation p.A127V 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 2 185800571 185800571 G A ZNF804A Missense_Mutation p.E150K 0.22 deleterious(0.01) benign(0.057) TCGA-EE-A2MD-06 2 185802381 185802381 C T ZNF804A Missense_Mutation p.A753V 0.25 tolerated(0.07) possibly_damaging(0.611) TCGA-EE-A2MD-06 2 185802718 185802718 C T ZNF804A Silent p.I865I 0.28 TCGA-EE-A2MD-06 2 186671695 186671695 G A FSIP2 Missense_Mutation p.D5977N 0.27 possibly_damaging(0.612) TCGA-EE-A2MD-06 2 18765453 18765453 C T NT5C1B Silent p.R324R 0.29 TCGA-EE-A2MD-06 2 187693211 187693211 C T ZSWIM2 Missense_Mutation p.D468N 0.26 tolerated(0.36) benign(0.027) TCGA-EE-A2MD-06 2 188361745 188361745 C T TFPI Missense_Mutation p.G61D 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 2 1893142 1893142 G A MYT1L Silent p.S795S 0.38 TCGA-EE-A2MD-06 2 1893143 1893143 G T MYT1L Missense_Mutation p.S795Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MD-06 2 189931166 189931166 G A COL5A2 Missense_Mutation p.P505S 0.39 probably_damaging(0.986) TCGA-EE-A2MD-06 2 191550256 191550256 T C NAB1 Missense_Mutation p.Y384H 0.42 tolerated_low_confidence(0.53) possibly_damaging(0.748) TCGA-EE-A2MD-06 2 192701434 192701434 C T SDPR Missense_Mutation p.E165K 0.32 tolerated(0.3) probably_damaging(0.999) TCGA-EE-A2MD-06 2 20135990 20135990 G A WDR35 Nonsense_Mutation p.R813* 0.25 TCGA-EE-A2MD-06 2 201846103 201846103 C T FAM126B Missense_Mutation p.D495N 0.31 deleterious(0.01) benign(0.147) TCGA-EE-A2MD-06 2 201994671 201994671 T C CFLAR Missense_Mutation p.V28A 0.38 tolerated(0.05) benign(0.141) TCGA-EE-A2MD-06 2 202622460 202622460 G A ALS2 Missense_Mutation p.P379L 0.24 tolerated(0.11) benign(0.15) TCGA-EE-A2MD-06 2 204000556 204000556 G A NBEAL1 Missense_Mutation p.D1295N 0.34 tolerated(0.45) benign(0) TCGA-EE-A2MD-06 2 206580965 206580965 C T NRP2 Silent p.L100L 0.33 TCGA-EE-A2MD-06 2 206921299 206921299 G A INO80D Missense_Mutation p.P196L 0.38 deleterious(0.04) benign(0.178) TCGA-EE-A2MD-06 2 207173185 207173185 G A ZDBF2 Silent p.R1311R 0.29 TCGA-EE-A2MD-06 2 207414845 207414845 G A ADAM23 Missense_Mutation p.M298I 0.26 deleterious(0.01) benign(0.4) TCGA-EE-A2MD-06 2 207953206 207953206 G A KLF7 Missense_Mutation p.P278L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 2 208993004 208993004 C T CRYGC Missense_Mutation p.E150K 0.34 deleterious(0.01) possibly_damaging(0.775) TCGA-EE-A2MD-06 2 209030435 209030435 G A C2orf80 3'UTR 0.24 TCGA-EE-A2MD-06 2 21230775 21230775 G A APOB Nonsense_Mutation p.Q2989* 0.32 TCGA-EE-A2MD-06 2 212570094 212570094 C T ERBB4 Missense_Mutation p.A383T 0.20 deleterious(0.02) benign(0.02) TCGA-EE-A2MD-06 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.38 tolerated(0.35) probably_damaging(0.947) TCGA-EE-A2MD-06 2 215890416 215890416 G A ABCA12 Missense_Mutation p.P423L 0.31 tolerated(0.15) benign(0.002) TCGA-EE-A2MD-06 2 216226263 216226263 G A FN1 3'UTR 0.32 TCGA-EE-A2MD-06 2 219222725 219222725 C T C2orf62 Intron 0.61 TCGA-EE-A2MD-06 2 219294026 219294026 G A VIL1 Missense_Mutation p.E196K 0.27 deleterious(0.02) benign(0.102) TCGA-EE-A2MD-06 2 219874695 219874695 G A CCDC108 Missense_Mutation p.S1474F 0.31 deleterious(0.04) benign(0.424) TCGA-EE-A2MD-06 2 220338538 220338538 G A SPEG Missense_Mutation p.V1454M 0.31 probably_damaging(0.999) TCGA-EE-A2MD-06 2 222290719 222290719 C T EPHA4 3'UTR 0.31 TCGA-EE-A2MD-06 2 223553217 223553217 C T MOGAT1 Silent p.H83H 0.33 TCGA-EE-A2MD-06 2 226446965 226446965 G A NYAP2 Missense_Mutation p.D278N 0.36 tolerated(0.06) possibly_damaging(0.771) TCGA-EE-A2MD-06 2 226447550 226447550 C T NYAP2 Missense_Mutation p.P473S 0.32 tolerated(0.19) probably_damaging(0.999) TCGA-EE-A2MD-06 2 227920746 227920746 C T COL4A4 Silent p.R877R 0.30 TCGA-EE-A2MD-06 2 228882449 228882449 C T SPHKAP Missense_Mutation p.E1041K 0.25 deleterious(0) probably_damaging(0.945) TCGA-EE-A2MD-06 2 228883545 228883545 G A SPHKAP Silent p.I675I 0.27 TCGA-EE-A2MD-06 2 230020561 230020561 C T PID1 Missense_Mutation p.M81I 0.29 tolerated(0.13) benign(0.004) TCGA-EE-A2MD-06 2 230282935 230282935 G A DNER Missense_Mutation p.L500F 0.30 deleterious(0.03) benign(0.232) TCGA-EE-A2MD-06 2 231158985 231158985 G A SP140 Splice_Site p.X657_splice 0.29 TCGA-EE-A2MD-06 2 231253340 231253340 G A SP140L Missense_Mutation p.R284Q 0.30 tolerated(0.21) benign(0.014) TCGA-EE-A2MD-06 2 233244537 233244537 C T ALPP Missense_Mutation p.A183V 0.36 deleterious(0.01) possibly_damaging(0.8) TCGA-EE-A2MD-06 2 233632892 233632892 G A KCNJ13 3'UTR 0.25 TCGA-EE-A2MD-06 2 234079226 234079226 G A INPP5D Missense_Mutation p.E614K 0.32 tolerated(1) benign(0.341) TCGA-EE-A2MD-06 2 234580549 234580549 C T UGT1A9 5'UTR 0.37 TCGA-EE-A2MD-06 2 234591056 234591056 C T UGT1A7 Missense_Mutation p.A158V 0.27 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MD-06 2 234628096 234628096 G A UGT1A4 Silent p.R210R 0.28 TCGA-EE-A2MD-06 2 234749336 234749336 G A HJURP Missense_Mutation p.S697F 0.21 deleterious(0.01) benign(0.405) TCGA-EE-A2MD-06 2 237246975 237246975 C T IQCA1 Silent p.L669L 0.26 TCGA-EE-A2MD-06 2 237489411 237489411 G A ACKR3 Silent p.V101V 0.28 TCGA-EE-A2MD-06 2 237489660 237489660 G A ACKR3 Silent p.K184K 0.41 TCGA-EE-A2MD-06 2 238280867 238280867 C T COL6A3 Missense_Mutation p.G1265S 0.33 possibly_damaging(0.823) TCGA-EE-A2MD-06 2 238303736 238303736 G A COL6A3 Missense_Mutation p.S68F 0.34 probably_damaging(0.986) TCGA-EE-A2MD-06 2 238738075 238738075 C T RBM44 Missense_Mutation p.S940F 0.27 deleterious(0.03) probably_damaging(0.981) TCGA-EE-A2MD-06 2 239049908 239049908 C T KLHL30 Silent p.F171F 0.22 TCGA-EE-A2MD-06 2 23977110 23977110 G A ATAD2B Missense_Mutation p.S1425F 0.69 deleterious(0) possibly_damaging(0.58) TCGA-EE-A2MD-06 2 240985208 240985208 G A OR6B3 Silent p.F94F 0.31 TCGA-EE-A2MD-06 2 24261392 24261392 T A C2orf44 Nonsense_Mutation p.K325* 0.30 TCGA-EE-A2MD-06 2 25384144 25384144 C T POMC Missense_Mutation p.D204N 0.33 tolerated(0.14) benign(0.372) TCGA-EE-A2MD-06 2 25469100 25469100 G A DNMT3A Missense_Mutation p.P453L 0.27 tolerated(0.09) possibly_damaging(0.835) TCGA-EE-A2MD-06 2 25469101 25469101 G A DNMT3A Missense_Mutation p.P453S 0.26 tolerated(0.13) benign(0.113) TCGA-EE-A2MD-06 2 25967139 25967139 G A ASXL2 Silent p.T689T 0.32 TCGA-EE-A2MD-06 2 272128 272128 C T ACP1 Intron 0.35 TCGA-EE-A2MD-06 2 27481726 27481726 C T SLC30A3 Missense_Mutation p.D58N 0.22 tolerated(1) benign(0.001) TCGA-EE-A2MD-06 2 27481727 27481727 C T SLC30A3 Silent p.R57R 0.23 TCGA-EE-A2MD-06 2 27559324 27559324 G A GTF3C2 Intron 0.36 TCGA-EE-A2MD-06 2 27802554 27802554 G A C2orf16 Missense_Mutation p.D1039N 0.38 tolerated(0.78) benign(0.007) TCGA-EE-A2MD-06 2 28775804 28775804 G A PLB1 Missense_Mutation p.G365R 0.28 deleterious(0.01) benign(0.013) TCGA-EE-A2MD-06 2 29006808 29006808 C T PPP1CB Missense_Mutation p.R186W 0.43 tolerated_low_confidence(0.07) probably_damaging(0.955) TCGA-EE-A2MD-06 2 29293647 29293647 C T C2orf71 Missense_Mutation p.E1161K 0.38 tolerated(0.15) benign(0.019) TCGA-EE-A2MD-06 2 29462669 29462669 C T ALK Silent p.G744G 0.26 TCGA-EE-A2MD-06 2 31147628 31147628 C T GALNT14 Missense_Mutation p.E410K 0.23 tolerated(0.14) benign(0.03) TCGA-EE-A2MD-06 2 31605980 31605980 C T XDH Missense_Mutation p.E309K 0.27 tolerated(0.97) benign(0.271) TCGA-EE-A2MD-06 2 32475575 32475575 C T NLRC4 Missense_Mutation p.R453Q 0.29 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A2MD-06 2 3341912 3341912 G A TSSC1 Silent p.I45I 0.43 TCGA-EE-A2MD-06 2 33749041 33749041 G A RASGRP3 Nonsense_Mutation p.W204* 0.26 TCGA-EE-A2MD-06 2 37085021 37085021 T A STRN Silent p.L605L 0.25 TCGA-EE-A2MD-06 2 37415677 37415677 G A SULT6B1 5'UTR 0.48 TCGA-EE-A2MD-06 2 39993247 39993247 G A THUMPD2 Silent p.I251I 0.27 TCGA-EE-A2MD-06 2 42671061 42671061 G A KCNG3 3'UTR 0.40 TCGA-EE-A2MD-06 2 43800110 43800110 G A THADA Missense_Mutation p.S584F 0.27 tolerated(0.19) benign(0.004) TCGA-EE-A2MD-06 2 44547676 44547676 G A SLC3A1 Silent p.T652T 0.32 TCGA-EE-A2MD-06 2 48914995 48914995 C T LHCGR Silent p.R647R 0.22 TCGA-EE-A2MD-06 2 49247283 49247283 C T FSHR Missense_Mutation p.D81N 0.27 tolerated(0.41) benign(0.043) TCGA-EE-A2MD-06 2 54482885 54482885 C T TSPYL6 Missense_Mutation p.G135E 0.37 tolerated(1) benign(0.045) TCGA-EE-A2MD-06 2 60688963 60688963 G A BCL11A Missense_Mutation p.P362S 0.42 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A2MD-06 2 63349035 63349035 G A WDPCP 3'UTR 0.25 TCGA-EE-A2MD-06 2 69093461 69093461 C T BMP10 Missense_Mutation p.G193R 0.22 tolerated(0.14) possibly_damaging(0.734) TCGA-EE-A2MD-06 2 69093694 69093694 G A BMP10 Missense_Mutation p.S115F 0.11 tolerated(0.16) possibly_damaging(0.629) TCGA-EE-A2MD-06 2 69240670 69240670 C T ANTXR1 Silent p.F13F 0.33 TCGA-EE-A2MD-06 2 7154674 7154674 C T RNF144A Silent p.H75H 0.32 TCGA-EE-A2MD-06 2 71840537 71840537 C T DYSF Silent p.I1487I 0.34 TCGA-EE-A2MD-06 2 71894519 71894519 C T DYSF Silent p.I1777I 0.19 TCGA-EE-A2MD-06 2 73651929 73651929 A G ALMS1 Missense_Mutation p.N379S 0.35 benign(0.055) TCGA-EE-A2MD-06 2 74273784 74273784 C T TET3 Missense_Mutation p.S112F 0.36 tolerated(0.15) possibly_damaging(0.583) TCGA-EE-A2MD-06 2 76975989 76975989 G A LRRTM4 Silent p.I535I 0.31 TCGA-EE-A2MD-06 2 79312225 79312225 G A REG1B 3'UTR 0.43 TCGA-EE-A2MD-06 2 85848678 85848678 C T USP39 Silent p.L137L 0.32 TCGA-EE-A2MD-06 2 85991120 85991120 T A ATOH8 Missense_Mutation p.C259S 0.28 tolerated(0.11) benign(0.036) TCGA-EE-A2MD-06 2 87201351 87201351 G A RGPD1 Missense_Mutation p.E469K 0.12 deleterious(0.01) benign(0.329) TCGA-EE-A2MD-06 2 89417004 89417004 C T IGKV1-17 Silent p.Q60Q 0.34 TCGA-EE-A2MD-06 2 95941806 95941806 G A PROM2 Silent p.K141K 0.40 TCGA-EE-A2MD-06 2 96956468 96956468 G A SNRNP200 Missense_Mutation p.P836L 0.34 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MD-06 2 96956469 96956469 G A SNRNP200 Missense_Mutation p.P836S 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MD-06 2 97166176 97166176 C T NEURL3 Intron 0.55 TCGA-EE-A2MD-06 2 97373551 97373551 G A LMAN2L Silent p.S279S 0.28 TCGA-EE-A2MD-06 2 98351917 98351917 G A ZAP70 Silent p.K429K 0.33 TCGA-EE-A2MD-06 2 99438370 99438370 G A KIAA1211L Missense_Mutation p.P789L 0.39 deleterious(0.01) probably_damaging(0.924) TCGA-EE-A2MD-06 3 100992530 100992530 C T IMPG2 Silent p.Q241Q 0.43 TCGA-EE-A2MD-06 3 101476477 101476477 G T CEP97 Splice_Site p.X343_splice 0.27 TCGA-EE-A2MD-06 3 107524238 107524238 C T BBX Silent p.L920L 0.27 TCGA-EE-A2MD-06 3 108195301 108195301 G A MYH15 Silent p.I412I 0.30 TCGA-EE-A2MD-06 3 108476028 108476028 C T RETNLB Missense_Mutation p.G2E 0.41 deleterious(0.02) benign(0.08) TCGA-EE-A2MD-06 3 108703568 108703568 C T MORC1 Nonsense_Mutation p.W773* 0.17 TCGA-EE-A2MD-06 3 111297913 111297913 C T CD96 Missense_Mutation p.H211Y 0.40 tolerated(0.26) possibly_damaging(0.688) TCGA-EE-A2MD-06 3 111426916 111426916 C T PLCXD2 Nonsense_Mutation p.R103* 0.26 TCGA-EE-A2MD-06 3 111638006 111638006 G A PHLDB2 Missense_Mutation p.E603K 0.37 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MD-06 3 111842254 111842254 C T GCSAM 3'UTR 0.31 TCGA-EE-A2MD-06 3 111927151 111927151 C T SLC9C1 Silent p.V620V 0.23 TCGA-EE-A2MD-06 3 111958766 111958766 G A SLC9C1 Missense_Mutation p.A456V 0.29 tolerated(1) benign(0.037) TCGA-EE-A2MD-06 3 113120439 113120439 A G WDR52 Silent p.L440L 0.31 TCGA-EE-A2MD-06 3 113955649 113955649 G A ZNF80 Silent p.D91D 0.44 TCGA-EE-A2MD-06 3 114069353 114069353 G A ZBTB20 Silent p.F524F 0.24 TCGA-EE-A2MD-06 3 114069466 114069466 G A ZBTB20 Silent p.L487L 0.35 TCGA-EE-A2MD-06 3 114069714 114069714 G A ZBTB20 Missense_Mutation p.A404V 0.34 tolerated(0.07) benign(0.021) TCGA-EE-A2MD-06 3 119222389 119222389 A T TIMMDC1 Missense_Mutation p.H124L 0.32 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MD-06 3 119466664 119466664 C T MAATS1 Silent p.T686T 0.42 TCGA-EE-A2MD-06 3 120134855 120134855 G A FSTL1 Missense_Mutation p.S28F 0.34 deleterious(0.01) possibly_damaging(0.736) TCGA-EE-A2MD-06 3 120924828 120924828 A T STXBP5L Missense_Mutation p.E312D 0.35 tolerated(0.35) probably_damaging(0.998) TCGA-EE-A2MD-06 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 3 121097680 121097680 G A STXBP5L Missense_Mutation p.R789Q 0.24 tolerated(0.12) benign(0.064) TCGA-EE-A2MD-06 3 121251894 121251894 G A POLQ Silent p.S301S 0.29 TCGA-EE-A2MD-06 3 121345629 121345629 C T FBXO40 Missense_Mutation p.P668S 0.31 tolerated(0.16) possibly_damaging(0.45) TCGA-EE-A2MD-06 3 121828152 121828152 G A CD86 Nonsense_Mutation p.W248* 0.29 TCGA-EE-A2MD-06 3 121980867 121980867 G A CASR Missense_Mutation p.G329S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 3 122003081 122003081 C T CASR Silent p.I770I 0.25 TCGA-EE-A2MD-06 3 122269585 122269585 G A PARP9 Missense_Mutation p.S426F 0.31 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2MD-06 3 122287933 122287933 C T DTX3L Missense_Mutation p.L333F 0.25 tolerated(0.13) benign(0.159) TCGA-EE-A2MD-06 3 122478140 122478140 G A HSPBAP1 Missense_Mutation p.S167F 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 3 122631110 122631110 A G SEMA5B Silent p.R989R 0.33 TCGA-EE-A2MD-06 3 124896669 124896669 G A SLC12A8 Silent p.I180I 0.21 TCGA-EE-A2MD-06 3 125509351 125509351 T C MIR548I1 RNA 0.37 TCGA-EE-A2MD-06 3 129267891 129267891 C T H1FOO Silent p.P142P 0.50 TCGA-EE-A2MD-06 3 130282394 130282394 C T COL6A6 Missense_Mutation p.H183Y 0.28 tolerated(0.16) probably_damaging(0.998) TCGA-EE-A2MD-06 3 130285619 130285619 C T COL6A6 Silent p.F452F 0.24 TCGA-EE-A2MD-06 3 130287097 130287097 G A COL6A6 Missense_Mutation p.D684N 0.30 deleterious(0.01) possibly_damaging(0.505) TCGA-EE-A2MD-06 3 137956154 137956154 C T ARMC8 Nonsense_Mutation p.R191* 0.27 TCGA-EE-A2MD-06 3 138121154 138121154 C T MRAS 3'UTR 0.34 TCGA-EE-A2MD-06 3 138192384 138192384 G A ESYT3 Silent p.G748G 0.26 TCGA-EE-A2MD-06 3 138384011 138384011 G A PIK3CB Missense_Mutation p.R847C 0.34 deleterious(0.05) benign(0.025) TCGA-EE-A2MD-06 3 139195319 139195319 C T RBP2 5'UTR 0.24 TCGA-EE-A2MD-06 3 140178397 140178397 C T CLSTN2 Silent p.S336S 0.26 TCGA-EE-A2MD-06 3 142083988 142083988 G A XRN1 Missense_Mutation p.R1099W 0.43 deleterious(0.01) possibly_damaging(0.676) TCGA-EE-A2MD-06 3 142523420 142523420 G A TRPC1 Nonsense_Mutation p.W701* 0.34 TCGA-EE-A2MD-06 3 142539863 142539863 G A PCOLCE2 Missense_Mutation p.T325I 0.40 tolerated(0.17) benign(0.1) TCGA-EE-A2MD-06 3 145822082 145822082 G A PLOD2 Silent p.T221T 0.29 TCGA-EE-A2MD-06 3 151046404 151046404 C T P2RY13 Missense_Mutation p.R147K 0.20 tolerated(0.48) benign(0.033) TCGA-EE-A2MD-06 3 151105774 151105774 C T MED12L Silent p.P1720P 0.27 TCGA-EE-A2MD-06 3 151155338 151155338 C T IGSF10 Silent p.P2337P 0.25 TCGA-EE-A2MD-06 3 151475216 151475216 G A AADACL2 Missense_Mutation p.G347E 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 3 154146580 154146580 G A GPR149 Silent p.F275F 0.31 TCGA-EE-A2MD-06 3 154859807 154859807 G A MME Missense_Mutation p.E329K 0.26 tolerated(0.92) benign(0.002) TCGA-EE-A2MD-06 3 155200480 155200480 T A PLCH1 Missense_Mutation p.K1120I 0.25 deleterious_low_confidence(0) benign(0.021) TCGA-EE-A2MD-06 3 155303856 155303856 G A PLCH1 Nonsense_Mutation p.Q188* 0.26 TCGA-EE-A2MD-06 3 155314091 155314091 G A PLCH1 Silent p.R40R 0.31 TCGA-EE-A2MD-06 3 156249266 156249266 G A KCNAB1 Missense_Mutation p.E384K 0.29 deleterious(0) possibly_damaging(0.891) TCGA-EE-A2MD-06 3 157177960 157177960 C T VEPH1 Intron 0.33 TCGA-EE-A2MD-06 3 158310243 158310243 G A MLF1 Missense_Mutation p.R39Q 0.29 tolerated(0.12) benign(0.01) TCGA-EE-A2MD-06 3 159713239 159713239 G A IL12A Missense_Mutation p.E219K 0.36 tolerated(0.27) benign(0.34) TCGA-EE-A2MD-06 3 164737539 164737539 C T SI Missense_Mutation p.G1092R 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 3 164767579 164767579 C T SI Missense_Mutation p.D533N 0.30 tolerated(0.47) benign(0.009) TCGA-EE-A2MD-06 3 164777015 164777015 C T SI Missense_Mutation p.G407R 0.31 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A2MD-06 3 167051674 167051674 C T ZBBX Missense_Mutation p.E210K 0.36 tolerated(0.17) benign(0.02) TCGA-EE-A2MD-06 3 168810796 168810796 G A MECOM Silent p.F915F 0.32 TCGA-EE-A2MD-06 3 168845701 168845701 T A MECOM Missense_Mutation p.N130I 0.24 tolerated(0.1) benign(0.243) TCGA-EE-A2MD-06 3 169540497 169540497 G A LRRIQ4 Missense_Mutation p.G263E 0.19 tolerated(0.08) probably_damaging(0.93) TCGA-EE-A2MD-06 3 169550874 169550874 C T LRRIQ4 Missense_Mutation p.P478L 0.33 deleterious(0.01) benign(0.267) TCGA-EE-A2MD-06 3 169820598 169820598 G A PHC3 Missense_Mutation p.L865F 0.34 tolerated(0.53) possibly_damaging(0.533) TCGA-EE-A2MD-06 3 169824618 169824618 A G PHC3 Splice_Site p.X823_splice 0.30 TCGA-EE-A2MD-06 3 169846476 169846476 G A PHC3 Missense_Mutation p.P595L 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MD-06 3 170013699 170013699 T A PRKCI Missense_Mutation p.V473D 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 3 170716075 170716075 G A SLC2A2 Silent p.F427F 0.25 TCGA-EE-A2MD-06 3 172163185 172163185 G A GHSR Silent p.S289S 0.23 TCGA-EE-A2MD-06 3 174814871 174814871 G A NAALADL2 Missense_Mutation p.R112Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MD-06 3 183910650 183910650 C T ABCF3 Silent p.V572V 0.12 TCGA-EE-A2MD-06 3 184008848 184008848 G A ECE2 Missense_Mutation p.G737R 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MD-06 3 184008849 184008849 G A ECE2 Missense_Mutation p.G737E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 3 184428585 184428585 G A MAGEF1 3'UTR 0.23 TCGA-EE-A2MD-06 3 184577778 184577778 G A VPS8 Silent p.K383K 0.33 TCGA-EE-A2MD-06 3 186965091 186965091 G A MASP1 Intron 0.21 TCGA-EE-A2MD-06 3 189604206 189604206 C T TP63 Missense_Mutation p.S458L 0.27 deleterious(0) benign(0.162) TCGA-EE-A2MD-06 3 189690747 189690747 G A LEPREL1 Nonsense_Mutation p.R539* 0.27 TCGA-EE-A2MD-06 3 190122642 190122642 G A CLDN16 Silent p.V173V 0.43 TCGA-EE-A2MD-06 3 192516332 192516332 G A MB21D2 Missense_Mutation p.P440L 0.31 tolerated(0.12) benign(0.001) TCGA-EE-A2MD-06 3 193031955 193031955 A G ATP13A5 Missense_Mutation p.V729A 0.18 deleterious(0) possibly_damaging(0.688) TCGA-EE-A2MD-06 3 193210763 193210763 G A ATP13A4 Missense_Mutation p.S159F 0.25 deleterious(0.03) probably_damaging(0.917) TCGA-EE-A2MD-06 3 196096312 196096312 G A UBXN7 Missense_Mutation p.S229F 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 3 19938289 19938289 G A EFHB Nonsense_Mutation p.R539* 0.55 TCGA-EE-A2MD-06 3 25611335 25611335 G A RARB Missense_Mutation p.D179N 0.42 tolerated(0.13) benign(0.009) TCGA-EE-A2MD-06 3 32932742 32932742 C T TRIM71 Silent p.F682F 0.54 TCGA-EE-A2MD-06 3 33400467 33400467 C T FBXL2 Missense_Mutation p.S25F 0.41 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MD-06 3 35732458 35732458 G A ARPP21 Missense_Mutation p.G216E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 3 36874203 36874203 C G TRANK1 Missense_Mutation p.E2247Q 0.56 tolerated(0.11) possibly_damaging(0.501) TCGA-EE-A2MD-06 3 38793949 38793949 G A SCN10A Missense_Mutation p.H506Y 0.38 tolerated(0.22) benign(0.303) TCGA-EE-A2MD-06 3 3888296 3888296 G A LRRN1 Silent p.K657K 0.46 TCGA-EE-A2MD-06 3 39171798 39171798 C T TTC21A Silent p.S763S 0.53 TCGA-EE-A2MD-06 3 39172499 39172499 C T TTC21A Silent p.S832S 0.51 TCGA-EE-A2MD-06 3 39227663 39227663 C T XIRP1 Missense_Mutation p.G1092S 0.42 tolerated(0.41) benign(0.349) TCGA-EE-A2MD-06 3 39307674 39307674 G A CX3CR1 Silent p.F141F 0.43 TCGA-EE-A2MD-06 3 46450698 46450698 C T CCRL2 3'UTR 0.40 TCGA-EE-A2MD-06 3 46753940 46753940 C T PRSS50 Missense_Mutation p.M318I 0.71 tolerated(0.19) benign(0.009) TCGA-EE-A2MD-06 3 46904857 46904857 G A MYL3 Silent p.P8P 0.37 TCGA-EE-A2MD-06 3 48219374 48219374 G A CDC25A Silent p.F218F 0.47 TCGA-EE-A2MD-06 3 48576723 48576723 G A PFKFB4 Silent p.I158I 0.55 TCGA-EE-A2MD-06 3 48617237 48617237 C T COL7A1 Missense_Mutation p.G1712E 0.42 unknown(0) TCGA-EE-A2MD-06 3 49138819 49138819 T C QARS Missense_Mutation p.K282R 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 3 50214261 50214261 G A SEMA3F Missense_Mutation p.D204N 0.48 tolerated(0.16) probably_damaging(1) TCGA-EE-A2MD-06 3 56044485 56044485 C T ERC2 Missense_Mutation p.E638K 0.45 tolerated(0.07) benign(0.247) TCGA-EE-A2MD-06 3 57649398 57649398 G A DENND6A Nonsense_Mutation p.R160* 0.25 TCGA-EE-A2MD-06 3 58141800 58141800 C T FLNB Nonsense_Mutation p.Q2327* 0.24 TCGA-EE-A2MD-06 3 58552471 58552471 C T FAM107A Intron 0.37 TCGA-EE-A2MD-06 3 58552888 58552888 G A FAM107A Intron 0.21 TCGA-EE-A2MD-06 3 58739519 58739519 G A C3orf67 Missense_Mutation p.S519F 0.39 deleterious(0.02) benign(0.067) TCGA-EE-A2MD-06 3 65439006 65439006 C T MAGI1 Silent p.T323T 0.31 TCGA-EE-A2MD-06 3 74350890 74350890 C T CNTN3 Nonsense_Mutation p.W618* 0.26 TCGA-EE-A2MD-06 3 96533487 96533487 C T EPHA6 Missense_Mutation p.P7L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MD-06 3 96962974 96962974 C T EPHA6 Silent p.I483I 0.22 TCGA-EE-A2MD-06 3 97806600 97806600 C T OR5AC2 Missense_Mutation p.S195F 0.35 tolerated(0.32) benign(0.071) TCGA-EE-A2MD-06 3 97887735 97887735 G A OR5H15 Silent p.G64G 0.22 TCGA-EE-A2MD-06 3 98002051 98002051 T A OR5H2 Missense_Mutation p.F107Y 0.36 tolerated(1) benign(0.002) TCGA-EE-A2MD-06 3 99513448 99513448 G A COL8A1 Missense_Mutation p.G235S 0.27 deleterious(0) unknown(0) TCGA-EE-A2MD-06 3 9991216 9991216 C T PRRT3 Missense_Mutation p.R195K 0.45 tolerated_low_confidence(0.62) benign(0.001) TCGA-EE-A2MD-06 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.32 probably_damaging(1) TCGA-EE-A2MD-06 4 102751320 102751320 A G BANK1 Silent p.E142E 0.23 TCGA-EE-A2MD-06 4 107165818 107165818 G A TBCK Silent p.I345I 0.38 TCGA-EE-A2MD-06 4 110650855 110650855 G A PLA2G12A Silent p.T37T 0.28 TCGA-EE-A2MD-06 4 111470877 111470877 C T ENPEP Missense_Mutation p.P779L 0.31 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2MD-06 4 114277268 114277268 C T ANK2 Silent p.L2498L 0.36 TCGA-EE-A2MD-06 4 115997498 115997498 G A NDST4 Missense_Mutation p.P232L 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 4 119951736 119951736 C T SYNPO2 Silent p.P602P 0.30 TCGA-EE-A2MD-06 4 123301320 123301320 G A ADAD1 Silent p.T32T 0.32 TCGA-EE-A2MD-06 4 123377456 123377456 C T IL2 Missense_Mutation p.G47E 0.25 tolerated(0.3) probably_damaging(0.998) TCGA-EE-A2MD-06 4 126241933 126241933 C T FAT4 Missense_Mutation p.S1456F 0.30 possibly_damaging(0.56) TCGA-EE-A2MD-06 4 126241934 126241934 C T FAT4 Silent p.S1456S 0.30 TCGA-EE-A2MD-06 4 126242698 126242698 C T FAT4 Missense_Mutation p.A1711V 0.33 benign(0.145) TCGA-EE-A2MD-06 4 126411357 126411357 G A FAT4 Silent p.R4460R 0.29 TCGA-EE-A2MD-06 4 126412600 126412600 G A FAT4 Missense_Mutation p.E4875K 0.35 probably_damaging(0.991) TCGA-EE-A2MD-06 4 128694608 128694608 G A SLC25A31 Missense_Mutation p.G276E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 4 1343519 1343519 C T UVSSA Silent p.P102P 0.52 TCGA-EE-A2MD-06 4 146823949 146823949 G A ZNF827 Silent p.L154L 0.18 TCGA-EE-A2MD-06 4 151770044 151770044 G A LRBA Missense_Mutation p.S1422F 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 4 152637244 152637244 G A PET112 Missense_Mutation p.S227F 0.25 deleterious(0.02) possibly_damaging(0.797) TCGA-EE-A2MD-06 4 155157450 155157450 G A DCHS2 Missense_Mutation p.S2330F 0.19 tolerated(1) benign(0.002) TCGA-EE-A2MD-06 4 155242369 155242369 G A DCHS2 Silent p.I939I 0.43 TCGA-EE-A2MD-06 4 155718033 155718033 G A RBM46 Silent p.R43R 0.31 TCGA-EE-A2MD-06 4 156618073 156618073 C T GUCY1A3 Silent p.S18S 0.33 TCGA-EE-A2MD-06 4 156716575 156716575 C A GUCY1B3 Missense_Mutation p.S270Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MD-06 4 156775465 156775465 A G ASIC5 Missense_Mutation p.F117L 0.21 tolerated(0.13) possibly_damaging(0.549) TCGA-EE-A2MD-06 4 158043524 158043524 T G GLRB Missense_Mutation p.F91C 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 4 158057999 158057999 C T GLRB Missense_Mutation p.P191S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 4 159559168 159559168 C T RXFP1 Missense_Mutation p.S327F 0.22 deleterious(0) possibly_damaging(0.82) TCGA-EE-A2MD-06 4 159568290 159568290 C T RXFP1 Missense_Mutation p.P565S 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MD-06 4 164247476 164247476 G A NPY1R Silent p.I77I 0.18 TCGA-EE-A2MD-06 4 164272537 164272537 C T NPY5R Missense_Mutation p.T371I 0.33 tolerated(0.3) probably_damaging(0.917) TCGA-EE-A2MD-06 4 164393571 164393571 G A TKTL2 Missense_Mutation p.A439V 0.30 deleterious(0.02) probably_damaging(0.956) TCGA-EE-A2MD-06 4 166978381 166978381 G A TLL1 Missense_Mutation p.R589Q 0.32 tolerated(0.1) benign(0.172) TCGA-EE-A2MD-06 4 167656152 167656152 C T SPOCK3 Missense_Mutation p.D411N 0.22 tolerated_low_confidence(0.16) unknown(0) TCGA-EE-A2MD-06 4 167675876 167675876 G A SPOCK3 Silent p.F241F 0.29 TCGA-EE-A2MD-06 4 169195106 169195106 G A DDX60 Silent p.V811V 0.36 TCGA-EE-A2MD-06 4 169433098 169433098 C T PALLD Missense_Mutation p.P148L 0.28 tolerated(0.11) benign(0.004) TCGA-EE-A2MD-06 4 170912519 170912519 G A MFAP3L 3'UTR 0.27 TCGA-EE-A2MD-06 4 170912520 170912520 G A MFAP3L 3'UTR 0.28 TCGA-EE-A2MD-06 4 175223258 175223258 A T CEP44 Missense_Mutation p.Y53F 0.34 tolerated(0.19) benign(0.066) TCGA-EE-A2MD-06 4 175897020 175897020 C T ADAM29 Missense_Mutation p.S115F 0.35 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MD-06 4 177142371 177142371 C T ASB5 Missense_Mutation p.G202E 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 4 183651461 183651461 C T TENM3 Silent p.R898R 0.21 TCGA-EE-A2MD-06 4 183664419 183664419 C T TENM3 Missense_Mutation p.S1159F 0.41 deleterious(0.05) benign(0) TCGA-EE-A2MD-06 4 188924639 188924639 C T ZFP42 Silent p.F226F 0.25 TCGA-EE-A2MD-06 4 189064806 189064806 T C TRIML1 Intron 0.42 TCGA-EE-A2MD-06 4 1944020 1944020 C T WHSC1 Intron 0.32 TCGA-EE-A2MD-06 4 23814447 23814447 C T PPARGC1A Missense_Mutation p.E648K 0.34 deleterious(0.02) unknown(0) TCGA-EE-A2MD-06 4 2896453 2896453 G A ADD1 Missense_Mutation p.A246T 0.09 tolerated(0.05) benign(0.119) TCGA-EE-A2MD-06 4 3230432 3230432 C T HTT Missense_Mutation p.P2647S 0.21 benign(0.091) TCGA-EE-A2MD-06 4 36230379 36230379 G A ARAP2 Missense_Mutation p.P244S 0.32 deleterious_low_confidence(0.04) benign(0.022) TCGA-EE-A2MD-06 4 38051416 38051416 G A TBC1D1 Missense_Mutation p.E603K 0.33 tolerated(0.42) benign(0.033) TCGA-EE-A2MD-06 4 38091654 38091654 C T TBC1D1 Missense_Mutation p.R718C 0.39 deleterious(0.02) benign(0.028) TCGA-EE-A2MD-06 4 38126669 38126669 G A TBC1D1 Missense_Mutation p.E1017K 0.26 deleterious(0.01) possibly_damaging(0.467) TCGA-EE-A2MD-06 4 38690447 38690447 C T KLF3 Missense_Mutation p.S100F 0.26 deleterious(0.05) benign(0.188) TCGA-EE-A2MD-06 4 38774794 38774794 C T TLR10 Missense_Mutation p.M806I 0.39 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MD-06 4 39929623 39929623 G T PDS5A Silent p.I100I 0.26 TCGA-EE-A2MD-06 4 40104546 40104546 C T N4BP2 Missense_Mutation p.P361S 0.31 tolerated(0.12) possibly_damaging(0.743) TCGA-EE-A2MD-06 4 42037347 42037347 C T SLC30A9 Silent p.T222T 0.26 TCGA-EE-A2MD-06 4 46067418 46067418 G A GABRG1 Nonsense_Mutation p.R169* 0.25 TCGA-EE-A2MD-06 4 46930372 46930372 C T GABRA4 Missense_Mutation p.G512E 0.30 tolerated(0.27) probably_damaging(0.911) TCGA-EE-A2MD-06 4 47427918 47427918 C T GABRB1 Silent p.L436L 0.34 TCGA-EE-A2MD-06 4 47574980 47574980 C T ATP10D Missense_Mutation p.S1111F 0.29 deleterious(0) possibly_damaging(0.713) TCGA-EE-A2MD-06 4 47655594 47655594 C T CORIN Missense_Mutation p.D607N 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 4 48114430 48114430 C T TXK Missense_Mutation p.D92N 0.33 tolerated(0.21) probably_damaging(1) TCGA-EE-A2MD-06 4 48996765 48996765 G A CWH43 Missense_Mutation p.G214E 0.27 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A2MD-06 4 54967785 54967785 G A GSX2 Missense_Mutation p.R204K 0.33 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MD-06 4 55131142 55131142 G A PDGFRA Missense_Mutation p.E229K 0.37 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MD-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 4 6055779 6055779 C T JAKMIP1 Missense_Mutation p.E602K 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 4 6473925 6473925 T A PPP2R2C Missense_Mutation p.N11I 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-EE-A2MD-06 4 69101869 69101869 C T TMPRSS11B Silent p.K80K 0.31 TCGA-EE-A2MD-06 4 69811101 69811101 C T UGT2A3 Missense_Mutation p.E263K 0.28 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A2MD-06 4 69962505 69962505 C T UGT2B7 Silent p.F89F 0.27 TCGA-EE-A2MD-06 4 70361450 70361450 C T UGT2B4 Missense_Mutation p.D44N 0.32 tolerated(0.09) benign(0.119) TCGA-EE-A2MD-06 4 71275427 71275427 C T PROL1 Missense_Mutation p.P128S 0.26 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A2MD-06 4 71508463 71508463 C T ENAM Silent p.P440P 0.24 TCGA-EE-A2MD-06 4 71510045 71510045 G A ENAM Missense_Mutation p.E968K 0.22 tolerated(0.17) benign(0.096) TCGA-EE-A2MD-06 4 71648890 71648890 C T RUFY3 Missense_Mutation p.S326F 0.37 deleterious(0.03) possibly_damaging(0.687) TCGA-EE-A2MD-06 4 71648891 71648891 C T RUFY3 Silent p.S326S 0.37 TCGA-EE-A2MD-06 4 74368823 74368823 C T AFM 3'UTR 0.33 TCGA-EE-A2MD-06 4 74853053 74853053 G A PPBP Missense_Mutation p.P108L 0.31 deleterious(0) benign(0.376) TCGA-EE-A2MD-06 4 74853054 74853054 G A PPBP Missense_Mutation p.P108S 0.30 deleterious(0) probably_damaging(0.92) TCGA-EE-A2MD-06 4 74903826 74903826 C T CXCL3 Missense_Mutation p.E98K 0.23 tolerated(0.09) benign(0.009) TCGA-EE-A2MD-06 4 75167443 75167443 C T MTHFD2L Missense_Mutation p.P321S 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 4 76714941 76714941 G A USO1 Missense_Mutation p.A449T 0.33 tolerated(0.08) benign(0.073) TCGA-EE-A2MD-06 4 76714942 76714942 C A USO1 Missense_Mutation p.A449E 0.34 deleterious(0) possibly_damaging(0.892) TCGA-EE-A2MD-06 4 77003064 77003064 C T ART3 Missense_Mutation p.P53S 0.32 deleterious(0.04) possibly_damaging(0.654) TCGA-EE-A2MD-06 4 79360134 79360134 C T FRAS1 Silent p.N1815N 0.29 TCGA-EE-A2MD-06 4 79462122 79462122 G A FRAS1 Silent p.R3961R 0.18 TCGA-EE-A2MD-06 4 81504291 81504291 C T C4orf22 Missense_Mutation p.T96M 0.36 deleterious(0.03) benign(0.01) TCGA-EE-A2MD-06 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.26 tolerated(0.18) possibly_damaging(0.643) TCGA-EE-A2MD-06 4 83970440 83970440 C T COPS4 Silent p.I92I 0.31 TCGA-EE-A2MD-06 4 85731467 85731467 G A WDFY3 Missense_Mutation p.R640C 0.41 deleterious(0) possibly_damaging(0.816) TCGA-EE-A2MD-06 4 87033 87033 C T Z95704.2 RNA 0.28 TCGA-EE-A2MD-06 4 87744979 87744979 C T SLC10A6 Silent p.T332T 0.43 TCGA-EE-A2MD-06 4 88055746 88055746 C T AFF1 Silent p.T1145T 0.30 TCGA-EE-A2MD-06 4 88533960 88533960 G A DSPP Missense_Mutation p.G208S 0.20 probably_damaging(0.981) TCGA-EE-A2MD-06 4 88767097 88767097 T C MEPE Silent p.D359D 0.29 TCGA-EE-A2MD-06 4 89671049 89671049 G A FAM13A Missense_Mutation p.S651F 0.28 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MD-06 4 91229803 91229803 G A CCSER1 Missense_Mutation p.R123Q 0.50 deleterious(0.02) benign(0.067) TCGA-EE-A2MD-06 4 95204435 95204435 C T SMARCAD1 Missense_Mutation p.H966Y 0.19 deleterious(0) possibly_damaging(0.747) TCGA-EE-A2MD-06 4 95494539 95494539 C T PDLIM5 Nonsense_Mutation p.Q96* 0.29 TCGA-EE-A2MD-06 5 10992745 10992745 G A CTNND2 Silent p.I1043I 0.34 TCGA-EE-A2MD-06 5 110407731 110407731 C T TSLP Missense_Mutation p.S48F 0.28 tolerated(0.48) benign(0.001) TCGA-EE-A2MD-06 5 112384869 112384869 G A MCC Missense_Mutation p.S859F 0.28 tolerated(0.09) possibly_damaging(0.804) TCGA-EE-A2MD-06 5 112769787 112769787 G A TSSK1B Silent p.Y250Y 0.30 TCGA-EE-A2MD-06 5 112888986 112888986 C T YTHDC2 Silent p.F599F 0.19 TCGA-EE-A2MD-06 5 11565081 11565081 C T CTNND2 Missense_Mutation p.E88K 0.26 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2MD-06 5 118484445 118484445 T A DMXL1 Missense_Mutation p.S975T 0.22 deleterious(0) possibly_damaging(0.777) TCGA-EE-A2MD-06 5 120022286 120022286 G A PRR16 Missense_Mutation p.G243E 0.28 deleterious_low_confidence(0) possibly_damaging(0.449) TCGA-EE-A2MD-06 5 121759211 121759211 A T SNCAIP Missense_Mutation p.N260I 0.26 tolerated(0.13) benign(0.004) TCGA-EE-A2MD-06 5 121786421 121786421 G A SNCAIP Missense_Mutation p.E627K 0.43 deleterious(0) benign(0.201) TCGA-EE-A2MD-06 5 126206432 126206432 G A MARCH3 Nonsense_Mutation p.Q219* 0.44 TCGA-EE-A2MD-06 5 131308513 131308513 G A ACSL6 Silent p.L414L 0.33 TCGA-EE-A2MD-06 5 132018273 132018273 G A IL4 Silent p.S152S 0.20 TCGA-EE-A2MD-06 5 132227973 132227973 G A AFF4 Silent p.S840S 0.33 TCGA-EE-A2MD-06 5 133895526 133895526 C T JADE2 Silent p.L106L 0.13 TCGA-EE-A2MD-06 5 133895527 133895527 C T JADE2 Missense_Mutation p.P107S 0.14 tolerated(0.84) benign(0.079) TCGA-EE-A2MD-06 5 13717512 13717512 C T DNAH5 Nonsense_Mutation p.W4206* 0.23 TCGA-EE-A2MD-06 5 137419860 137419860 C T WNT8A Intron 0.29 TCGA-EE-A2MD-06 5 137500762 137500762 G A BRD8 Missense_Mutation p.P458S 0.33 deleterious(0.04) possibly_damaging(0.841) TCGA-EE-A2MD-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.34 benign(0) TCGA-EE-A2MD-06 5 13776628 13776628 C T DNAH5 Missense_Mutation p.R3098K 0.30 benign(0.22) TCGA-EE-A2MD-06 5 137780970 137780970 C T REEP2 Silent p.T155T 0.23 TCGA-EE-A2MD-06 5 13864741 13864741 C T DNAH5 Missense_Mutation p.R1454Q 0.33 possibly_damaging(0.553) TCGA-EE-A2MD-06 5 13900364 13900364 G A DNAH5 Missense_Mutation p.S737F 0.31 benign(0.046) TCGA-EE-A2MD-06 5 140166324 140166324 C T PCDHA1 Missense_Mutation p.S150L 0.24 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-EE-A2MD-06 5 140167741 140167741 C T PCDHA1 Silent p.F622F 0.36 TCGA-EE-A2MD-06 5 140175450 140175450 G A PCDHA2 Missense_Mutation p.E301K 0.32 deleterious_low_confidence(0.02) benign(0.113) TCGA-EE-A2MD-06 5 140176535 140176535 G A PCDHA2 Silent p.T662T 0.29 TCGA-EE-A2MD-06 5 140214325 140214325 G A PCDHA7 Silent p.V119V 0.20 TCGA-EE-A2MD-06 5 140215029 140215029 C T PCDHA7 Missense_Mutation p.S354F 0.37 deleterious_low_confidence(0.02) benign(0.13) TCGA-EE-A2MD-06 5 140221721 140221721 G A PCDHA8 Missense_Mutation p.G272E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-EE-A2MD-06 5 140222032 140222032 G A PCDHA8 Missense_Mutation p.D376N 0.35 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-EE-A2MD-06 5 140257013 140257013 G A PCDHA12 Silent p.K652K 0.19 TCGA-EE-A2MD-06 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.31 deleterious(0) possibly_damaging(0.492) TCGA-EE-A2MD-06 5 140476783 140476783 G A PCDHB2 3'UTR 0.27 TCGA-EE-A2MD-06 5 140537601 140537601 C T PCDHB17 3'UTR 0.25 TCGA-EE-A2MD-06 5 140553766 140553766 C T PCDHB7 Silent p.A450A 0.34 TCGA-EE-A2MD-06 5 140554011 140554011 G A PCDHB7 Missense_Mutation p.G532D 0.31 deleterious_low_confidence(0.02) benign(0.204) TCGA-EE-A2MD-06 5 140557579 140557579 G A PCDHB8 5'UTR 0.14 TCGA-EE-A2MD-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.12 tolerated_low_confidence(0.62) benign(0) TCGA-EE-A2MD-06 5 140558545 140558545 C T PCDHB8 Silent p.F310F 0.13 TCGA-EE-A2MD-06 5 140558795 140558795 C T PCDHB8 Silent p.L394L 0.19 TCGA-EE-A2MD-06 5 140562928 140562928 C T PCDHB16 Missense_Mutation p.S265F 0.28 deleterious_low_confidence(0.02) benign(0.098) TCGA-EE-A2MD-06 5 140581214 140581214 G A PCDHB11 Missense_Mutation p.E623K 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MD-06 5 140588761 140588761 G A PCDHB12 Silent p.E94E 0.29 TCGA-EE-A2MD-06 5 140682838 140682839 - A SLC25A2 Frame_Shift_Ins p.A199Cfs*8 0.18 TCGA-EE-A2MD-06 5 140712271 140712271 G A PCDHGA1 Missense_Mutation p.D674N 0.31 deleterious_low_confidence(0.02) benign(0.176) TCGA-EE-A2MD-06 5 140719247 140719247 G A PCDHGA2 Missense_Mutation p.D237N 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MD-06 5 140720539 140720539 G A PCDHGA2 Silent p.R667R 0.33 TCGA-EE-A2MD-06 5 140740672 140740672 C T PCDHGB2 Missense_Mutation p.P324S 0.30 deleterious(0.05) benign(0.026) TCGA-EE-A2MD-06 5 140753756 140753756 C T PCDHGA6 Missense_Mutation p.P36S 0.33 tolerated_low_confidence(0.08) benign(0.344) TCGA-EE-A2MD-06 5 140754405 140754405 C T PCDHGA6 Missense_Mutation p.P252L 0.29 tolerated_low_confidence(0.11) benign(0.232) TCGA-EE-A2MD-06 5 140961908 140961908 G A DIAPH1 Missense_Mutation p.R219C 0.34 unknown(0) TCGA-EE-A2MD-06 5 145886679 145886679 A G TCERG1 Missense_Mutation p.E940G 0.27 deleterious(0) unknown(0) TCGA-EE-A2MD-06 5 14607499 14607499 C T FAM105A Missense_Mutation p.P187S 0.29 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2MD-06 5 14751205 14751205 G A ANKH Silent p.I220I 0.29 TCGA-EE-A2MD-06 5 147695343 147695343 C T SPINK7 3'UTR 0.50 TCGA-EE-A2MD-06 5 147716009 147716009 A G SPINK9 Missense_Mutation p.K27R 0.27 tolerated(0.85) benign(0.002) TCGA-EE-A2MD-06 5 148407894 148407894 G A SH3TC2 Silent p.F467F 0.34 TCGA-EE-A2MD-06 5 149754238 149754238 C T TCOF1 Missense_Mutation p.S381F 0.21 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A2MD-06 5 150911369 150911369 G A FAT2 Missense_Mutation p.P3197L 0.35 possibly_damaging(0.686) TCGA-EE-A2MD-06 5 150947743 150947743 G A FAT2 Silent p.L250L 0.41 TCGA-EE-A2MD-06 5 151771675 151771675 C T NMUR2 3'UTR 0.41 TCGA-EE-A2MD-06 5 153078433 153078433 C T GRIA1 Missense_Mutation p.P428S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 5 153078581 153078581 G T GRIA1 Missense_Mutation p.R477L 0.22 deleterious(0.05) probably_damaging(1) TCGA-EE-A2MD-06 5 154174820 154174820 C T LARP1 Missense_Mutation p.L363F 0.25 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MD-06 5 156381622 156381622 G A TIMD4 Silent p.L68L 0.27 TCGA-EE-A2MD-06 5 156390236 156390236 C T TIMD4 5'UTR 0.28 TCGA-EE-A2MD-06 5 156592675 156592675 C T FAM71B Missense_Mutation p.E169K 0.29 deleterious(0) possibly_damaging(0.657) TCGA-EE-A2MD-06 5 156734867 156734867 C T CYFIP2 Silent p.F272F 0.25 TCGA-EE-A2MD-06 5 156899999 156899999 C T NIPAL4 3'UTR 0.24 TCGA-EE-A2MD-06 5 159834755 159834755 T C SLU7 Missense_Mutation p.Q328R 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 5 161281227 161281227 G A GABRA1 Silent p.L46L 0.25 TCGA-EE-A2MD-06 5 169931626 169931626 G A KCNIP1 Missense_Mutation p.R17Q 0.25 tolerated(0.18) benign(0.001) TCGA-EE-A2MD-06 5 172447873 172447873 C T ATP6V0E1 Intron 0.22 TCGA-EE-A2MD-06 5 172744809 172744809 G A STC2 3'UTR 0.33 TCGA-EE-A2MD-06 5 176079893 176079893 C T TSPAN17 Silent p.L145L 0.27 TCGA-EE-A2MD-06 5 176308748 176308748 G A HK3 Nonsense_Mutation p.Q780* 0.24 TCGA-EE-A2MD-06 5 176471497 176471497 G A ZNF346 Silent p.K160K 0.21 TCGA-EE-A2MD-06 5 176519753 176519753 C T FGFR4 Missense_Mutation p.S342F 0.26 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MD-06 5 176812783 176812783 C T SLC34A1 Missense_Mutation p.S14F 0.25 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-EE-A2MD-06 5 176931106 176931106 G A DOK3 Silent p.L457L 0.32 TCGA-EE-A2MD-06 5 176951899 176951899 G A FAM193B Missense_Mutation p.P528L 0.36 tolerated_low_confidence(0.05) benign(0.045) TCGA-EE-A2MD-06 5 177468702 177468702 G A FAM153C Missense_Mutation p.E48K 0.33 tolerated_low_confidence(0.48) possibly_damaging(0.801) TCGA-EE-A2MD-06 5 177651732 177651732 T A PHYKPL Splice_Site p.X138_splice 0.24 TCGA-EE-A2MD-06 5 178699945 178699945 G A ADAMTS2 Missense_Mutation p.P219S 0.28 tolerated(0.55) benign(0.007) TCGA-EE-A2MD-06 5 180048217 180048217 C T FLT4 Missense_Mutation p.D686N 0.37 tolerated(0.99) benign(0.171) TCGA-EE-A2MD-06 5 180057250 180057250 G A FLT4 Missense_Mutation p.P163L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 5 180582573 180582573 C T OR2V2 Missense_Mutation p.P211S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 5 24488091 24488091 T C CDH10 Missense_Mutation p.E683G 0.33 tolerated(0.47) benign(0.025) TCGA-EE-A2MD-06 5 24537681 24537681 G A CDH10 Missense_Mutation p.H112Y 0.20 tolerated(0.07) probably_damaging(0.917) TCGA-EE-A2MD-06 5 32089405 32089405 C T PDZD2 Missense_Mutation p.P1951S 0.24 tolerated(0.45) benign(0.006) TCGA-EE-A2MD-06 5 32089406 32089406 C T PDZD2 Missense_Mutation p.P1951L 0.24 deleterious(0.03) benign(0.006) TCGA-EE-A2MD-06 5 35065447 35065447 C T PRLR Missense_Mutation p.G538E 0.21 tolerated(1) benign(0.005) TCGA-EE-A2MD-06 5 35740274 35740274 G A SPEF2 Missense_Mutation p.D1079N 0.29 tolerated(0.08) benign(0.012) TCGA-EE-A2MD-06 5 35814624 35814624 C T SPEF2 Missense_Mutation p.S1813L 0.25 deleterious(0.01) possibly_damaging(0.761) TCGA-EE-A2MD-06 5 35814670 35814670 G A SPEF2 3'UTR 0.35 TCGA-EE-A2MD-06 5 35904728 35904728 C T CAPSL Missense_Mutation p.M182I 0.29 tolerated(0.57) benign(0.002) TCGA-EE-A2MD-06 5 35910057 35910057 G A CAPSL Missense_Mutation p.P146S 0.28 deleterious(0.04) possibly_damaging(0.646) TCGA-EE-A2MD-06 5 37048731 37048731 C A NIPBL Silent p.T2239T 0.10 TCGA-EE-A2MD-06 5 38431313 38431313 G A EGFLAM Missense_Mutation p.E697K 0.22 tolerated(0.07) possibly_damaging(0.641) TCGA-EE-A2MD-06 5 38964940 38964940 G A RICTOR Silent p.L452L 0.27 TCGA-EE-A2MD-06 5 40962188 40962188 T C C7 Silent p.L555L 0.25 TCGA-EE-A2MD-06 5 41004875 41004875 C T MROH2B Splice_Site p.X1337_splice 0.30 TCGA-EE-A2MD-06 5 41015527 41015527 C T MROH2B Missense_Mutation p.D980N 0.36 tolerated(0.29) benign(0.008) TCGA-EE-A2MD-06 5 41054925 41054925 G A MROH2B Missense_Mutation p.H351Y 0.32 tolerated(0.4) benign(0.001) TCGA-EE-A2MD-06 5 41176764 41176764 C T C6 Silent p.T327T 0.37 TCGA-EE-A2MD-06 5 42801088 42801088 C T SEPP1 Missense_Mutation p.E294K 0.34 tolerated_low_confidence(0.21) possibly_damaging(0.631) TCGA-EE-A2MD-06 5 45396681 45396681 G A HCN1 Silent p.V381V 0.33 TCGA-EE-A2MD-06 5 5464486 5464486 C T KIAA0947 Missense_Mutation p.A1680V 0.37 tolerated(0.89) benign(0.001) TCGA-EE-A2MD-06 5 55111156 55111156 C T DDX4 Missense_Mutation p.P668S 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 5 55265424 55265424 G A IL6ST Silent p.F108F 0.29 TCGA-EE-A2MD-06 5 64020086 64020086 G A SREK1IP1 3'UTR 0.23 TCGA-EE-A2MD-06 5 73190268 73190268 C T ARHGEF28 Silent p.L1237L 0.15 TCGA-EE-A2MD-06 5 73931665 73931665 T C ENC1 Missense_Mutation p.N216D 0.30 tolerated(0.51) benign(0.108) TCGA-EE-A2MD-06 5 74324903 74324903 G A GCNT4 Silent p.I320I 0.40 TCGA-EE-A2MD-06 5 78293828 78293828 C T DMGDH 3'UTR 0.38 TCGA-EE-A2MD-06 5 80604836 80604836 C T ZCCHC9 Missense_Mutation p.P203S 0.25 tolerated(0.06) benign(0.356) TCGA-EE-A2MD-06 5 80628307 80628307 G A ACOT12 Silent p.P460P 0.30 TCGA-EE-A2MD-06 5 83239179 83239179 C T EDIL3 3'UTR 0.52 TCGA-EE-A2MD-06 5 86658439 86658439 G C RASA1 Missense_Mutation p.K468N 0.20 deleterious(0.03) probably_damaging(0.966) TCGA-EE-A2MD-06 5 89930994 89930994 G A GPR98 Missense_Mutation p.E635K 0.26 benign(0) TCGA-EE-A2MD-06 5 89989931 89989931 C T GPR98 Missense_Mutation p.S2453L 0.49 possibly_damaging(0.587) TCGA-EE-A2MD-06 5 94275859 94275859 G A MCTP1 Missense_Mutation p.P368S 0.31 tolerated(0.52) possibly_damaging(0.562) TCGA-EE-A2MD-06 5 94275892 94275892 C T MCTP1 Missense_Mutation p.D357N 0.32 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MD-06 6 100390994 100390994 G A MCHR2 Nonsense_Mutation p.R140* 0.32 TCGA-EE-A2MD-06 6 100838545 100838545 G A SIM1 Missense_Mutation p.R665C 0.28 tolerated_low_confidence(0.08) benign(0.011) TCGA-EE-A2MD-06 6 100841753 100841753 G A SIM1 Missense_Mutation p.H394Y 0.17 tolerated(0.07) benign(0.369) TCGA-EE-A2MD-06 6 107231999 107231999 C T MIR587 5'Flank 0.24 TCGA-EE-A2MD-06 6 109767004 109767004 T A MICAL1 Missense_Mutation p.E881D 0.41 tolerated(0.15) benign(0.003) TCGA-EE-A2MD-06 6 110620142 110620142 C T METTL24 Missense_Mutation p.E257K 0.26 tolerated(0.06) probably_damaging(0.913) TCGA-EE-A2MD-06 6 110778126 110778126 G A SLC22A16 Missense_Mutation p.H50Y 0.29 tolerated(0.35) benign(0.008) TCGA-EE-A2MD-06 6 111696857 111696857 C A REV3L Missense_Mutation p.D901Y 0.34 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-EE-A2MD-06 6 112386127 112386127 G A WISP3 Silent p.K190K 0.40 TCGA-EE-A2MD-06 6 116836900 116836900 G A FAM26E Silent p.L226L 0.38 TCGA-EE-A2MD-06 6 117246660 117246660 C T RFX6 Silent p.L575L 0.35 TCGA-EE-A2MD-06 6 117252646 117252646 G A RFX6 Missense_Mutation p.G922R 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MD-06 6 117609907 117609907 C T ROS1 Missense_Mutation p.M2264I 0.32 tolerated_low_confidence(0.07) benign(0.015) TCGA-EE-A2MD-06 6 117700235 117700235 G A ROS1 Missense_Mutation p.L862F 0.31 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A2MD-06 6 123046433 123046433 G A PKIB 3'UTR 0.27 TCGA-EE-A2MD-06 6 127898383 127898383 C T C6orf58 Missense_Mutation p.S18F 0.20 tolerated(0.06) benign(0.048) TCGA-EE-A2MD-06 6 131191166 131191166 G A EPB41L2 Missense_Mutation p.S715L 0.19 tolerated(0.25) benign(0.112) TCGA-EE-A2MD-06 6 133827288 133827288 G A EYA4 Missense_Mutation p.M412I 0.22 deleterious(0.02) benign(0.246) TCGA-EE-A2MD-06 6 134210846 134210846 C T TCF21 Missense_Mutation p.T104I 0.23 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MD-06 6 13588655 13588655 T C SIRT5 Missense_Mutation p.F70L 0.19 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MD-06 6 136977592 136977592 G A MAP3K5 Silent p.L511L 0.23 TCGA-EE-A2MD-06 6 137330539 137330539 G A IL20RA Missense_Mutation p.P165L 0.36 deleterious(0.04) benign(0.376) TCGA-EE-A2MD-06 6 1390486 1390486 C T FOXF2 Missense_Mutation p.P102S 0.52 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MD-06 6 142737042 142737042 G A GPR126 Missense_Mutation p.D927N 0.33 tolerated(0.37) benign(0.014) TCGA-EE-A2MD-06 6 143074913 143074913 G A HIVEP2 Silent p.A2224A 0.34 TCGA-EE-A2MD-06 6 143081087 143081087 G A HIVEP2 Missense_Mutation p.P2113L 0.29 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A2MD-06 6 143090817 143090817 T G HIVEP2 Missense_Mutation p.T1687P 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 6 149262487 149262487 C T UST Silent p.L122L 0.29 TCGA-EE-A2MD-06 6 150240616 150240616 A C RAET1G Intron 0.38 TCGA-EE-A2MD-06 6 150713596 150713596 G A IYD Missense_Mutation p.M162I 0.29 tolerated(0.18) benign(0.007) TCGA-EE-A2MD-06 6 151152181 151152181 C T PLEKHG1 Missense_Mutation p.P645L 0.34 tolerated(0.18) benign(0.043) TCGA-EE-A2MD-06 6 152542057 152542057 G A SYNE1 Nonsense_Mutation p.R7261* 0.30 TCGA-EE-A2MD-06 6 153042884 153042884 T A MYCT1 Silent p.L68L 0.34 TCGA-EE-A2MD-06 6 158535902 158535902 G A SERAC1 Missense_Mutation p.H535Y 0.29 deleterious(0.03) possibly_damaging(0.664) TCGA-EE-A2MD-06 6 159420880 159420880 C T RSPH3 Silent p.G43G 0.22 TCGA-EE-A2MD-06 6 160963746 160963746 C T LPA Nonsense_Mutation p.W1831* 0.27 TCGA-EE-A2MD-06 6 160978539 160978539 C T LPA Missense_Mutation p.D1566N 0.32 tolerated(0.82) possibly_damaging(0.826) TCGA-EE-A2MD-06 6 161087380 161087380 C T LPA 5'UTR 0.25 TCGA-EE-A2MD-06 6 165711528 165711528 G A C6orf118 Silent p.L333L 0.29 TCGA-EE-A2MD-06 6 167343100 167343100 G A RNASET2 Silent p.P249P 0.29 TCGA-EE-A2MD-06 6 167754124 167754124 C T TTLL2 Missense_Mutation p.P246S 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MD-06 6 168430197 168430197 G A KIF25 5'UTR 0.29 TCGA-EE-A2MD-06 6 17799556 17799556 C T KIF13A Missense_Mutation p.E911K 0.29 tolerated(0.22) benign(0.043) TCGA-EE-A2MD-06 6 24134690 24134690 G A NRSN1 Silent p.E45E 0.14 TCGA-EE-A2MD-06 6 24145875 24145875 G A NRSN1 Missense_Mutation p.D97N 0.20 tolerated(0.09) benign(0.036) TCGA-EE-A2MD-06 6 24596214 24596214 G A KIAA0319 Missense_Mutation p.P230S 0.19 tolerated(0.47) benign(0.007) TCGA-EE-A2MD-06 6 25773766 25773766 C T SLC17A4 Missense_Mutation p.P284L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 6 25819814 25819814 T C SLC17A1 Missense_Mutation p.T152A 0.22 tolerated(0.45) benign(0.038) TCGA-EE-A2MD-06 6 25862543 25862543 G A SLC17A3 Missense_Mutation p.S74F 0.21 tolerated(0.32) benign(0.111) TCGA-EE-A2MD-06 6 26508836 26508836 G A BTN1A1 Missense_Mutation p.E339K 0.18 tolerated(0.11) possibly_damaging(0.898) TCGA-EE-A2MD-06 6 26508953 26508953 A T BTN1A1 Missense_Mutation p.N378Y 0.19 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MD-06 6 2779538 2779538 C T WRNIP1 Missense_Mutation p.A433V 0.19 deleterious(0.02) possibly_damaging(0.566) TCGA-EE-A2MD-06 6 2779539 2779539 T C WRNIP1 Silent p.A433A 0.19 TCGA-EE-A2MD-06 6 27925618 27925618 C T OR2B6 Silent p.F200F 0.20 TCGA-EE-A2MD-06 6 28054062 28054062 C T ZNF165 Missense_Mutation p.S175L 0.23 tolerated(0.71) possibly_damaging(0.761) TCGA-EE-A2MD-06 6 28227361 28227361 C T NKAPL Missense_Mutation p.S71L 0.22 deleterious(0.03) unknown(0) TCGA-EE-A2MD-06 6 28543043 28543043 C T SCAND3 Missense_Mutation p.R480Q 0.21 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MD-06 6 29012694 29012694 C T OR2W1 Missense_Mutation p.G87R 0.10 deleterious(0.03) benign(0.093) TCGA-EE-A2MD-06 6 29080598 29080598 G A OR2J3 Missense_Mutation p.E311K 0.24 tolerated(0.51) benign(0.024) TCGA-EE-A2MD-06 6 29141693 29141693 C T OR2J2 Missense_Mutation p.S94L 0.23 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MD-06 6 29142018 29142018 C T OR2J2 Silent p.V202V 0.19 TCGA-EE-A2MD-06 6 29275144 29275144 C T OR14J1 Silent p.I226I 0.20 TCGA-EE-A2MD-06 6 29323035 29323035 G A OR5V1 Missense_Mutation p.S313F 0.30 tolerated_low_confidence(0.14) benign(0.001) TCGA-EE-A2MD-06 6 29323773 29323773 G A OR5V1 Missense_Mutation p.A67V 0.20 deleterious(0) possibly_damaging(0.529) TCGA-EE-A2MD-06 6 29342447 29342447 C T OR12D3 Missense_Mutation p.M206I 0.21 tolerated(0.53) benign(0.006) TCGA-EE-A2MD-06 6 29430458 29430458 G A OR2H1 Silent p.G304G 0.19 TCGA-EE-A2MD-06 6 30076814 30076814 G A TRIM31 Silent p.V252V 0.16 TCGA-EE-A2MD-06 6 30134956 30134956 C T TRIM15 Missense_Mutation p.R129C 0.27 deleterious(0) possibly_damaging(0.902) TCGA-EE-A2MD-06 6 30672586 30672586 G A MDC1 Silent p.S1458S 0.19 TCGA-EE-A2MD-06 6 30955265 30955265 C T MUC21 Missense_Mutation p.S438F 0.16 deleterious(0) unknown(0) TCGA-EE-A2MD-06 6 31129706 31129706 C T TCF19 Missense_Mutation p.P241S 0.21 tolerated(0.19) benign(0.004) TCGA-EE-A2MD-06 6 31378479 31378479 T A MICA Missense_Mutation p.L77Q 0.31 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MD-06 6 31778985 31778985 G A HSPA1L Silent p.I255I 0.49 TCGA-EE-A2MD-06 6 31842531 31842531 C T SLC44A4 Silent p.R145R 0.21 TCGA-EE-A2MD-06 6 32017215 32017215 T A TNXB 5'Flank 0.22 TCGA-EE-A2MD-06 6 32036257 32036257 C T TNXB Missense_Mutation p.G2044S 0.26 probably_damaging(0.999) TCGA-EE-A2MD-06 6 32037450 32037450 C T TNXB Missense_Mutation p.E1823K 0.25 possibly_damaging(0.795) TCGA-EE-A2MD-06 6 32041670 32041670 C T RNA5SP206 3'Flank 0.23 TCGA-EE-A2MD-06 6 32188937 32188937 G A NOTCH4 Missense_Mutation p.P206L 0.25 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MD-06 6 32487313 32487313 C T HLA-DRB5 Silent p.R162R 0.11 TCGA-EE-A2MD-06 6 32947752 32947752 C T BRD2 Silent p.G698G 0.16 TCGA-EE-A2MD-06 6 33135606 33135606 G A COL11A2 Silent p.S1242S 0.20 TCGA-EE-A2MD-06 6 33154564 33154564 C T COL11A2 Missense_Mutation p.G213E 0.21 probably_damaging(0.999) TCGA-EE-A2MD-06 6 33246917 33246917 C T WDR46 3'UTR 0.44 TCGA-EE-A2MD-06 6 33246918 33246918 C T WDR46 3'UTR 0.40 TCGA-EE-A2MD-06 6 33260299 33260299 G A RGL2 Missense_Mutation p.P677L 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 6 33264882 33264882 G A RGL2 Missense_Mutation p.S56F 0.20 deleterious(0) benign(0.259) TCGA-EE-A2MD-06 6 33385990 33385990 G A CUTA 5'UTR 0.17 TCGA-EE-A2MD-06 6 33400470 33400470 C T SYNGAP1 Silent p.F132F 0.16 TCGA-EE-A2MD-06 6 33406562 33406562 C T SYNGAP1 Silent p.I514I 0.20 TCGA-EE-A2MD-06 6 34008079 34008079 T C GRM4 Missense_Mutation p.N461S 0.20 tolerated(0.41) benign(0.011) TCGA-EE-A2MD-06 6 34101135 34101135 C T GRM4 Missense_Mutation p.G47R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 6 34949646 34949646 C T ANKS1A Silent p.H205H 0.25 TCGA-EE-A2MD-06 6 35088283 35088283 G A TCP11 Missense_Mutation p.L299F 0.30 tolerated(0.14) benign(0.378) TCGA-EE-A2MD-06 6 35259167 35259167 C T ZNF76 Silent p.V246V 0.29 TCGA-EE-A2MD-06 6 35959503 35959503 C T SLC26A8 Missense_Mutation p.R292Q 0.44 tolerated(0.09) probably_damaging(0.937) TCGA-EE-A2MD-06 6 36982774 36982774 C T FGD2 Missense_Mutation p.S330F 0.13 deleterious(0) possibly_damaging(0.78) TCGA-EE-A2MD-06 6 37619992 37619992 G A MDGA1 Silent p.Y369Y 0.23 TCGA-EE-A2MD-06 6 37631751 37631751 G A MDGA1 Nonsense_Mutation p.R67* 0.34 TCGA-EE-A2MD-06 6 38256186 38256186 C T BTBD9 Missense_Mutation p.G439E 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 6 38690578 38690578 G A DNAH8 5'Flank 0.37 TCGA-EE-A2MD-06 6 38757653 38757653 G A DNAH8 Missense_Mutation p.M669I 0.23 benign(0) TCGA-EE-A2MD-06 6 38862525 38862525 C T DNAH8 Nonsense_Mutation p.R2661* 0.29 TCGA-EE-A2MD-06 6 38994366 38994366 G A DNAH8 Missense_Mutation p.G4370S 0.34 probably_damaging(0.973) TCGA-EE-A2MD-06 6 39034008 39034008 C T GLP1R Silent p.I146I 0.15 TCGA-EE-A2MD-06 6 42227184 42227184 G A TRERF1 Missense_Mutation p.S721L 0.29 deleterious(0.01) benign(0.32) TCGA-EE-A2MD-06 6 42231058 42231058 G A TRERF1 Silent p.L628L 0.14 TCGA-EE-A2MD-06 6 43173896 43173896 C T CUL9 Missense_Mutation p.L1649F 0.50 deleterious(0) possibly_damaging(0.587) TCGA-EE-A2MD-06 6 43322558 43322558 G A ZNF318 Silent p.I838I 0.26 TCGA-EE-A2MD-06 6 43412653 43412653 C T ABCC10 Silent p.L939L 0.28 TCGA-EE-A2MD-06 6 44275008 44275008 A T AARS2 Missense_Mutation p.F340I 0.33 tolerated(0.33) benign(0.122) TCGA-EE-A2MD-06 6 46111434 46111434 C T ENPP4 3'UTR 0.30 TCGA-EE-A2MD-06 6 47681738 47681738 G A GPR115 Missense_Mutation p.E253K 0.27 tolerated(0.32) benign(0.006) TCGA-EE-A2MD-06 6 47681824 47681824 G A GPR115 Silent p.R281R 0.32 TCGA-EE-A2MD-06 6 47682214 47682214 C T GPR115 Silent p.V411V 0.31 TCGA-EE-A2MD-06 6 47846809 47846809 C T PTCHD4 Missense_Mutation p.D591N 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MD-06 6 47976780 47976780 C T PTCHD4 Missense_Mutation p.R166Q 0.23 tolerated(0.6) benign(0.02) TCGA-EE-A2MD-06 6 49459879 49459879 C T CENPQ Missense_Mutation p.P233L 0.33 deleterious(0.02) possibly_damaging(0.889) TCGA-EE-A2MD-06 6 49802985 49802985 C T CRISP1 3'UTR 0.20 TCGA-EE-A2MD-06 6 4995466 4995466 G A RPP40 Missense_Mutation p.S313F 0.20 deleterious(0) possibly_damaging(0.824) TCGA-EE-A2MD-06 6 51890234 51890234 G A PKHD1 Silent p.S1458S 0.35 TCGA-EE-A2MD-06 6 51941127 51941127 G A PKHD1 Missense_Mutation p.S132F 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MD-06 6 52103575 52103575 G A IL17F Silent p.S69S 0.30 TCGA-EE-A2MD-06 6 53363632 53363632 T A GCLC Missense_Mutation p.L612F 0.28 tolerated(0.05) benign(0.163) TCGA-EE-A2MD-06 6 54792355 54792355 G A FAM83B Missense_Mutation p.G220E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 6 55113604 55113604 C T HCRTR2 Missense_Mutation p.P131S 0.27 deleterious(0.01) possibly_damaging(0.899) TCGA-EE-A2MD-06 6 55128507 55128507 G A HCRTR2 Missense_Mutation p.E217K 0.24 tolerated(0.18) benign(0.004) TCGA-EE-A2MD-06 6 55989070 55989070 C T COL21A1 Silent p.G557G 0.30 TCGA-EE-A2MD-06 6 56029616 56029616 C T COL21A1 Missense_Mutation p.G428E 0.29 tolerated(0.38) benign(0.118) TCGA-EE-A2MD-06 6 62390905 62390905 C T KHDRBS2 Missense_Mutation p.R338K 0.40 tolerated(1) benign(0.039) TCGA-EE-A2MD-06 6 62887203 62887203 G A KHDRBS2 Nonsense_Mutation p.Q36* 0.43 TCGA-EE-A2MD-06 6 6305667 6305667 C T F13A1 Missense_Mutation p.R79K 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 6 63990433 63990433 C T LGSN Silent p.G341G 0.24 TCGA-EE-A2MD-06 6 69348689 69348689 C T BAI3 Missense_Mutation p.S41L 0.31 tolerated(0.69) probably_damaging(0.921) TCGA-EE-A2MD-06 6 69944939 69944939 G A BAI3 Missense_Mutation p.G875S 0.34 tolerated(0.47) probably_damaging(1) TCGA-EE-A2MD-06 6 70064197 70064197 C T BAI3 Missense_Mutation p.P1178S 0.29 deleterious(0.02) benign(0.038) TCGA-EE-A2MD-06 6 70071080 70071080 A T BAI3 Missense_Mutation p.E1305D 0.39 tolerated(0.47) benign(0.229) TCGA-EE-A2MD-06 6 70408946 70408946 A G LMBRD1 Missense_Mutation p.Y443H 0.27 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MD-06 6 71234783 71234783 C T FAM135A Missense_Mutation p.P666S 0.31 tolerated(0.14) benign(0.009) TCGA-EE-A2MD-06 6 72889377 72889377 G A RIMS1 Missense_Mutation p.G191R 0.26 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MD-06 6 73919610 73919610 G A RP11-257K9.8 3'UTR 0.62 TCGA-EE-A2MD-06 6 74073510 74073510 C T KHDC3L Missense_Mutation p.S194F 0.35 deleterious(0.01) possibly_damaging(0.671) TCGA-EE-A2MD-06 6 74115448 74115448 A G DDX43 Missense_Mutation p.K233E 0.19 tolerated(0.16) possibly_damaging(0.908) TCGA-EE-A2MD-06 6 7569517 7569517 C T DSP Silent p.P506P 0.20 TCGA-EE-A2MD-06 6 7575559 7575559 C T DSP Missense_Mutation p.S823L 0.26 benign(0.154) TCGA-EE-A2MD-06 6 7580162 7580162 C T DSP Nonsense_Mutation p.R1247* 0.28 TCGA-EE-A2MD-06 6 7583417 7583417 G T DSP Missense_Mutation p.K1974N 0.26 probably_damaging(0.996) TCGA-EE-A2MD-06 6 80196870 80196870 G A LCA5 Nonsense_Mutation p.Q649* 0.27 TCGA-EE-A2MD-06 6 82924094 82924094 A T IBTK Missense_Mutation p.V685D 0.21 deleterious(0) possibly_damaging(0.86) TCGA-EE-A2MD-06 6 82924095 82924095 C T IBTK Missense_Mutation p.V685I 0.21 tolerated(0.13) benign(0.048) TCGA-EE-A2MD-06 6 84234178 84234178 G A PRSS35 Missense_Mutation p.D340N 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 6 84234203 84234203 C T PRSS35 Missense_Mutation p.S348L 0.28 deleterious(0) possibly_damaging(0.808) TCGA-EE-A2MD-06 6 84765138 84765138 C T MRAP2 Missense_Mutation p.S34F 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MD-06 6 84799131 84799131 G A MRAP2 Silent p.L183L 0.34 TCGA-EE-A2MD-06 6 88854839 88854839 G A CNR1 Missense_Mutation p.S52F 0.25 tolerated_low_confidence(0.07) benign(0.365) TCGA-EE-A2MD-06 6 89967511 89967511 G A GABRR2 Silent p.L426L 0.38 TCGA-EE-A2MD-06 6 90573247 90573247 C T CASP8AP2 RNA 0.33 TCGA-EE-A2MD-06 6 90604299 90604299 C T GJA10 Missense_Mutation p.R38C 0.33 deleterious(0) possibly_damaging(0.806) TCGA-EE-A2MD-06 6 90605712 90605712 G A GJA10 Missense_Mutation p.G509R 0.22 tolerated_low_confidence(0.06) benign(0.022) TCGA-EE-A2MD-06 6 93967213 93967213 G A EPHA7 Silent p.F713F 0.30 TCGA-EE-A2MD-06 6 94066711 94066711 C T EPHA7 Missense_Mutation p.E350K 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-EE-A2MD-06 7 100004369 100004369 G T ZCWPW1 Missense_Mutation p.P373Q 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2MD-06 7 100004371 100004371 G A ZCWPW1 Silent p.I372I 0.23 TCGA-EE-A2MD-06 7 100245157 100245157 C T ACTL6B Splice_Site p.X224_splice 0.32 TCGA-EE-A2MD-06 7 100350287 100350287 C A ZAN Silent p.S853S 0.31 TCGA-EE-A2MD-06 7 100552178 100552178 C T MUC3A Missense_Mutation p.P310L 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MD-06 7 100692607 100692607 G A MUC17 Missense_Mutation p.M4222I 0.21 unknown(0) TCGA-EE-A2MD-06 7 100839366 100839366 G A MOGAT3 Missense_Mutation p.P296L 0.57 tolerated(0.4) benign(0.034) TCGA-EE-A2MD-06 7 103061940 103061940 C T SLC26A5 Missense_Mutation p.E8K 0.27 deleterious(0.02) benign(0.092) TCGA-EE-A2MD-06 7 103197532 103197532 C T RELN Missense_Mutation p.E1897K 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-EE-A2MD-06 7 103301971 103301971 C T RELN Nonsense_Mutation p.W431* 0.30 TCGA-EE-A2MD-06 7 104722179 104722179 T A KMT2E Nonsense_Mutation p.Y431* 0.32 TCGA-EE-A2MD-06 7 106509196 106509196 G A PIK3CG Missense_Mutation p.R397K 0.22 tolerated(0.89) benign(0.006) TCGA-EE-A2MD-06 7 107399438 107399438 C T CBLL1 Nonsense_Mutation p.Q431* 0.21 TCGA-EE-A2MD-06 7 113518733 113518733 G A PPP1R3A Missense_Mutation p.S805L 0.35 deleterious(0) probably_damaging(0.931) TCGA-EE-A2MD-06 7 113519598 113519598 C T PPP1R3A Missense_Mutation p.D517N 0.24 tolerated(0.21) benign(0) TCGA-EE-A2MD-06 7 117232021 117232021 G A CFTR Silent p.R600R 0.30 TCGA-EE-A2MD-06 7 119914607 119914607 A T KCND2 5'UTR 0.27 TCGA-EE-A2MD-06 7 120884392 120884392 G A CPED1 Silent p.K770K 0.20 TCGA-EE-A2MD-06 7 122338165 122338165 G A RNF133 Missense_Mutation p.R270C 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 7 123509272 123509272 C T HYAL4 Silent p.F315F 0.29 TCGA-EE-A2MD-06 7 123594010 123594010 A T SPAM1 Missense_Mutation p.K129I 0.30 tolerated(0.07) benign(0.392) TCGA-EE-A2MD-06 7 123594221 123594221 C T SPAM1 Silent p.F199F 0.25 TCGA-EE-A2MD-06 7 126079219 126079219 G A GRM8 Missense_Mutation p.S894F 0.30 tolerated(0.08) possibly_damaging(0.485) TCGA-EE-A2MD-06 7 127013995 127013995 A T ZNF800 Silent p.A465A 0.38 TCGA-EE-A2MD-06 7 127894690 127894690 G A LEP Silent p.E126E 0.19 TCGA-EE-A2MD-06 7 128119245 128119245 A C METTL2B Missense_Mutation p.N79T 0.26 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2MD-06 7 128478071 128478071 C T FLNC Missense_Mutation p.R334C 0.40 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MD-06 7 128494716 128494716 G A FLNC Missense_Mutation p.R2326Q 0.44 tolerated(0.15) benign(0.035) TCGA-EE-A2MD-06 7 128495345 128495345 C T FLNC Missense_Mutation p.R2410C 0.30 tolerated(0.1) possibly_damaging(0.74) TCGA-EE-A2MD-06 7 128807634 128807634 C T TSPAN33 Silent p.S257S 0.25 TCGA-EE-A2MD-06 7 129909544 129909544 G A CPA2 Silent p.E63E 0.33 TCGA-EE-A2MD-06 7 131887442 131887442 C T PLXNA4 Missense_Mutation p.G850D 0.29 tolerated(0.56) benign(0.16) TCGA-EE-A2MD-06 7 134215542 134215542 G A AKR1B10 Missense_Mutation p.D72N 0.27 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A2MD-06 7 138522763 138522763 G A KIAA1549 Missense_Mutation p.S1914F 0.70 deleterious(0) probably_damaging(0.935) TCGA-EE-A2MD-06 7 138603310 138603310 G A KIAA1549 Silent p.F354F 0.26 TCGA-EE-A2MD-06 7 141619260 141619260 G A OR9A4 Silent p.T195T 0.25 TCGA-EE-A2MD-06 7 141673171 141673171 G A TAS2R38 Missense_Mutation p.L107F 0.31 tolerated(0.06) possibly_damaging(0.48) TCGA-EE-A2MD-06 7 141673292 141673292 G A TAS2R38 Silent p.F66F 0.27 TCGA-EE-A2MD-06 7 141722180 141722180 C T MGAM Missense_Mutation p.R275W 0.33 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MD-06 7 141727450 141727450 G A MGAM Missense_Mutation p.G379E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 7 141732706 141732706 C T MGAM Missense_Mutation p.P556S 0.32 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MD-06 7 142032418 142032418 C T TRBV7-1 Missense_Mutation p.P80S 0.45 tolerated(0.14) benign(0.328) TCGA-EE-A2MD-06 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.36 TCGA-EE-A2MD-06 7 142111541 142111541 G A TRBV5-7 Silent p.I65I 0.32 TCGA-EE-A2MD-06 7 142149099 142149099 G A TRBV5-5 Silent p.L58L 0.27 TCGA-EE-A2MD-06 7 142240017 142240017 G A TRBV9 5'UTR 0.19 TCGA-EE-A2MD-06 7 142247385 142247385 G A TRBV7-3 Missense_Mutation p.S24F 0.24 TCGA-EE-A2MD-06 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.17 TCGA-EE-A2MD-06 7 142643326 142643326 G A KEL Missense_Mutation p.R428C 0.25 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MD-06 7 142723739 142723739 G A OR9A2 Nonsense_Mutation p.Q161* 0.30 TCGA-EE-A2MD-06 7 143017764 143017764 C T CLCN1 Silent p.I103I 0.24 TCGA-EE-A2MD-06 7 143079425 143079425 C T ZYX Missense_Mutation p.P98L 0.26 deleterious(0.03) unknown(0) TCGA-EE-A2MD-06 7 143140926 143140926 C T TAS2R60 Silent p.H127H 0.32 TCGA-EE-A2MD-06 7 143657981 143657981 G A OR2F1 Nonsense_Mutation p.W306* 0.18 TCGA-EE-A2MD-06 7 143657982 143657982 A G OR2F1 Missense_Mutation p.K307E 0.19 deleterious(0) benign(0.059) TCGA-EE-A2MD-06 7 143701246 143701246 C T OR6B1 Missense_Mutation p.R53W 0.28 tolerated(0.06) benign(0.002) TCGA-EE-A2MD-06 7 143771348 143771348 C T OR2A25 Silent p.L12L 0.40 TCGA-EE-A2MD-06 7 143771684 143771684 C T OR2A25 Silent p.A124A 0.24 TCGA-EE-A2MD-06 7 143771942 143771942 C T OR2A25 Silent p.F210F 0.34 TCGA-EE-A2MD-06 7 143929689 143929689 T C OR2A42 Missense_Mutation p.N83S 0.31 deleterious(0.04) benign(0.323) TCGA-EE-A2MD-06 7 144015397 144015397 C T OR2A1 Silent p.F60F 0.13 TCGA-EE-A2MD-06 7 146997273 146997273 C T CNTNAP2 Silent p.F463F 0.35 TCGA-EE-A2MD-06 7 147336289 147336289 C T CNTNAP2 Silent p.L663L 0.31 TCGA-EE-A2MD-06 7 149500563 149500563 G A SSPO Intron 0.23 TCGA-EE-A2MD-06 7 149500813 149500813 G A SSPO RNA 0.33 TCGA-EE-A2MD-06 7 150027858 150027858 C T ZBED6CL Missense_Mutation p.P122L 0.29 deleterious(0.03) benign(0.002) TCGA-EE-A2MD-06 7 150217236 150217236 C T GIMAP7 Silent p.D58D 0.24 TCGA-EE-A2MD-06 7 150390397 150390397 C T GIMAP2 3'UTR 0.34 TCGA-EE-A2MD-06 7 150493711 150493711 G A TMEM176B Intron 0.36 TCGA-EE-A2MD-06 7 150695477 150695477 G A NOS3 Silent p.Q205Q 0.26 TCGA-EE-A2MD-06 7 151127230 151127230 G A CRYGN Silent p.F151F 0.44 TCGA-EE-A2MD-06 7 151797962 151797962 C T GALNT11 Silent p.D125D 0.24 TCGA-EE-A2MD-06 7 154876243 154876243 G A HTR5A 3'UTR 0.28 TCGA-EE-A2MD-06 7 155567803 155567803 C T RBM33 3'UTR 0.53 TCGA-EE-A2MD-06 7 157691392 157691392 C T PTPRN2 Silent p.L587L 0.32 TCGA-EE-A2MD-06 7 158829505 158829505 G A VIPR2 Missense_Mutation p.T229I 0.33 deleterious(0.04) benign(0.075) TCGA-EE-A2MD-06 7 18767315 18767315 C T HDAC9 Missense_Mutation p.S615F 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 7 18801810 18801810 G A HDAC9 Missense_Mutation p.E692K 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MD-06 7 19035711 19035711 C T HDAC9 3'Flank 0.43 TCGA-EE-A2MD-06 7 2108855 2108855 G A MAD1L1 Nonsense_Mutation p.Q398* 0.36 TCGA-EE-A2MD-06 7 21765493 21765493 C T DNAH11 Missense_Mutation p.P2451L 0.24 probably_damaging(1) TCGA-EE-A2MD-06 7 21827025 21827025 G A DNAH11 Missense_Mutation p.D3257N 0.26 probably_damaging(0.967) TCGA-EE-A2MD-06 7 23825120 23825120 G A STK31 Missense_Mutation p.M724I 0.32 tolerated(0.4) benign(0.04) TCGA-EE-A2MD-06 7 25163633 25163633 G A CYCS Missense_Mutation p.L36F 0.25 deleterious(0.01) possibly_damaging(0.536) TCGA-EE-A2MD-06 7 2583225 2583225 G A BRAT1 Missense_Mutation p.R268C 0.23 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MD-06 7 27141067 27141067 C T HOXA2 Missense_Mutation p.D137N 0.35 tolerated(0.23) benign(0.109) TCGA-EE-A2MD-06 7 30118226 30118226 A G PLEKHA8 Silent p.P461P 0.32 TCGA-EE-A2MD-06 7 31126557 31126557 G A ADCYAP1R1 Missense_Mutation p.G275E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 7 31691654 31691654 G A CCDC129 Missense_Mutation p.G964E 0.42 tolerated(0.15) benign(0.394) TCGA-EE-A2MD-06 7 31692532 31692532 G A CCDC129 Intron 0.28 TCGA-EE-A2MD-06 7 32109955 32109955 T A PDE1C Intron 0.34 TCGA-EE-A2MD-06 7 35144265 35144265 G A DPY19L2P1 RNA 0.38 TCGA-EE-A2MD-06 7 37907434 37907434 G A NME8 Missense_Mutation p.R251Q 0.23 tolerated(0.62) benign(0.001) TCGA-EE-A2MD-06 7 37934091 37934091 G A NME8 Missense_Mutation p.E475K 0.36 tolerated(0.1) benign(0.314) TCGA-EE-A2MD-06 7 38259190 38259190 C T STARD3NL Missense_Mutation p.S193L 0.35 tolerated(0.35) benign(0.012) TCGA-EE-A2MD-06 7 38289004 38289004 G A TRGC2 Silent p.S57S 0.33 TCGA-EE-A2MD-06 7 40102466 40102466 C T CDK13 Missense_Mutation p.P881L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 7 44198801 44198801 G A GCK 5'UTR 0.34 TCGA-EE-A2MD-06 7 44579759 44579759 G A NPC1L1 Silent p.P79P 0.19 TCGA-EE-A2MD-06 7 45743296 45743296 G A ADCY1 Missense_Mutation p.G890E 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 7 45954538 45954538 G A IGFBP3 Missense_Mutation p.P259S 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MD-06 7 4798970 4798970 C T FOXK1 Silent p.I480I 0.45 TCGA-EE-A2MD-06 7 48313737 48313737 C T ABCA13 Missense_Mutation p.L1492F 0.38 possibly_damaging(0.452) TCGA-EE-A2MD-06 7 4900186 4900186 G A PAPOLB Missense_Mutation p.P418L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 7 50444268 50444268 G A IKZF1 Silent p.E66E 0.26 TCGA-EE-A2MD-06 7 51095984 51095984 G A COBL Missense_Mutation p.P937S 0.34 tolerated(0.49) benign(0.017) TCGA-EE-A2MD-06 7 51097132 51097132 G A COBL Missense_Mutation p.S554L 0.47 tolerated(0.42) benign(0.001) TCGA-EE-A2MD-06 7 51097239 51097239 G A COBL Silent p.I518I 0.30 TCGA-EE-A2MD-06 7 53104076 53104076 C T POM121L12 Missense_Mutation p.P238S 0.33 tolerated(0.06) possibly_damaging(0.82) TCGA-EE-A2MD-06 7 54610435 54610435 C T VSTM2A Silent p.I4I 0.25 TCGA-EE-A2MD-06 7 57188840 57188840 G A ZNF479 Silent p.T94T 0.26 TCGA-EE-A2MD-06 7 63726909 63726909 G A ZNF679 Missense_Mutation p.E300K 0.29 tolerated(0.07) possibly_damaging(0.522) TCGA-EE-A2MD-06 7 65842257 65842257 G A LINC00174 RNA 0.56 TCGA-EE-A2MD-06 7 6730531 6730531 C T ZNF12 Missense_Mutation p.R681K 0.18 tolerated(0.11) probably_damaging(0.947) TCGA-EE-A2MD-06 7 70255516 70255516 C T AUTS2 Missense_Mutation p.S1105L 0.40 tolerated(0.11) benign(0.239) TCGA-EE-A2MD-06 7 72413897 72413897 C T POM121 Missense_Mutation p.T857I 0.37 deleterious(0) benign(0.26) TCGA-EE-A2MD-06 7 72413898 72413898 C T POM121 Silent p.T857T 0.36 TCGA-EE-A2MD-06 7 72658837 72658837 G A GTF2IRD2P1 RNA 0.27 TCGA-EE-A2MD-06 7 72732989 72732989 C T TRIM50 Silent p.V186V 0.27 TCGA-EE-A2MD-06 7 75959023 75959023 G A YWHAG Silent p.I205I 0.35 TCGA-EE-A2MD-06 7 76828852 76828852 C T FGL2 Missense_Mutation p.E87K 0.24 deleterious(0.01) possibly_damaging(0.844) TCGA-EE-A2MD-06 7 76908345 76908345 G A CCDC146 Missense_Mutation p.E541K 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MD-06 7 8258070 8258070 G A ICA1 Silent p.A148A 0.29 TCGA-EE-A2MD-06 7 82581416 82581416 C T PCLO Silent p.R2951R 0.34 TCGA-EE-A2MD-06 7 83014739 83014739 C T SEMA3E Silent p.L582L 0.25 TCGA-EE-A2MD-06 7 86394765 86394765 G A GRM3 Missense_Mutation p.D102N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 7 86416063 86416063 G A GRM3 Missense_Mutation p.G319S 0.34 deleterious(0.01) possibly_damaging(0.835) TCGA-EE-A2MD-06 7 86416064 86416064 G A GRM3 Missense_Mutation p.G319D 0.34 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MD-06 7 86469060 86469060 G A GRM3 Missense_Mutation p.D744N 0.31 tolerated(1) benign(0.029) TCGA-EE-A2MD-06 7 87459344 87459344 G A RUNDC3B Silent p.%3D 0.27 TCGA-EE-A2MD-06 7 87912423 87912423 G A STEAP4 Missense_Mutation p.L173F 0.24 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2MD-06 7 91924316 91924316 C T ANKIB1 Silent p.F8F 0.22 TCGA-EE-A2MD-06 7 92760570 92760570 G A SAMD9L Missense_Mutation p.S1572F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 7 97498279 97498279 C T ASNS Missense_Mutation p.V64M 0.36 deleterious(0.01) benign(0.075) TCGA-EE-A2MD-06 7 98575844 98575844 C T TRRAP Missense_Mutation p.S2792F 0.30 benign(0.212) TCGA-EE-A2MD-06 7 99169387 99169387 T A ZNF655 Silent p.T71T 0.33 TCGA-EE-A2MD-06 7 99566050 99566050 G A AZGP1 Missense_Mutation p.S114F 0.28 deleterious(0) possibly_damaging(0.453) TCGA-EE-A2MD-06 8 102381355 102381355 A T NACAP1 RNA 0.21 TCGA-EE-A2MD-06 8 10470341 10470341 G A RP1L1 Missense_Mutation p.R423W 0.26 benign(0.028) TCGA-EE-A2MD-06 8 10480452 10480452 A G RP1L1 Missense_Mutation p.L87P 0.28 probably_damaging(1) TCGA-EE-A2MD-06 8 105261748 105261748 G A RIMS2 Missense_Mutation p.G1208E 0.31 tolerated_low_confidence(0.31) possibly_damaging(0.762) TCGA-EE-A2MD-06 8 105367188 105367188 C T DCSTAMP Silent p.F371F 0.23 TCGA-EE-A2MD-06 8 108264096 108264096 G A ANGPT1 Missense_Mutation p.P495L 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 8 108334231 108334231 T C ANGPT1 Missense_Mutation p.E234G 0.34 deleterious(0.03) benign(0.015) TCGA-EE-A2MD-06 8 110100443 110100443 G A TRHR Nonsense_Mutation p.W234* 0.26 TCGA-EE-A2MD-06 8 110376775 110376775 G A PKHD1L1 Splice_Site p.X25_splice 0.33 TCGA-EE-A2MD-06 8 110476758 110476758 A G PKHD1L1 Missense_Mutation p.N2566S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 8 110509276 110509276 G A PKHD1L1 Missense_Mutation p.D3486N 0.22 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A2MD-06 8 11301779 11301779 C T FAM167A Missense_Mutation p.E48K 0.31 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MD-06 8 113402921 113402921 A T CSMD3 Missense_Mutation p.I1969N 0.36 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2MD-06 8 11406605 11406605 C T BLK Silent p.A114A 0.26 TCGA-EE-A2MD-06 8 114111130 114111130 G A CSMD3 Missense_Mutation p.P258S 0.29 deleterious(0) benign(0.113) TCGA-EE-A2MD-06 8 11637289 11637289 C T NEIL2 Silent p.L107L 0.26 TCGA-EE-A2MD-06 8 11637335 11637335 C T NEIL2 Missense_Mutation p.P123S 0.24 tolerated(0.26) benign(0.038) TCGA-EE-A2MD-06 8 117768042 117768042 C A EIF3H 5'UTR 0.10 TCGA-EE-A2MD-06 8 120116118 120116118 G A COLEC10 Missense_Mutation p.M142I 0.24 tolerated(0.22) benign(0.004) TCGA-EE-A2MD-06 8 120809338 120809338 T A TAF2 Missense_Mutation p.N328I 0.20 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MD-06 8 121298182 121298182 G A COL14A1 Silent p.R1350R 0.26 TCGA-EE-A2MD-06 8 121381652 121381652 C T COL14A1 Missense_Mutation p.P1747S 0.28 tolerated(0.19) possibly_damaging(0.776) TCGA-EE-A2MD-06 8 121644878 121644878 G A SNTB1 Missense_Mutation p.H268Y 0.17 tolerated(0.58) benign(0.15) TCGA-EE-A2MD-06 8 123966097 123966097 G A ZHX2 Missense_Mutation p.D783N 0.27 tolerated(0.21) benign(0.157) TCGA-EE-A2MD-06 8 125076785 125076785 C T FER1L6 Nonsense_Mutation p.Q1176* 0.26 TCGA-EE-A2MD-06 8 125989878 125989878 C T ZNF572 Silent p.I456I 0.27 TCGA-EE-A2MD-06 8 131124539 131124539 G A ASAP1 Silent p.P734P 0.32 TCGA-EE-A2MD-06 8 131859750 131859750 C T ADCY8 Missense_Mutation p.D808N 0.30 tolerated(0.4) benign(0.002) TCGA-EE-A2MD-06 8 131880124 131880124 G A ADCY8 Silent p.I726I 0.31 TCGA-EE-A2MD-06 8 131916162 131916162 C T ADCY8 Silent p.Q589Q 0.27 TCGA-EE-A2MD-06 8 131921957 131921957 G A ADCY8 Missense_Mutation p.P546L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 8 133141858 133141858 C T KCNQ3 Missense_Mutation p.R757Q 0.33 tolerated(0.42) benign(0.003) TCGA-EE-A2MD-06 8 133192458 133192458 G A KCNQ3 Silent p.D241D 0.19 TCGA-EE-A2MD-06 8 133734323 133734323 G A TMEM71 Silent p.L220L 0.24 TCGA-EE-A2MD-06 8 133919002 133919002 C T TG Missense_Mutation p.S1235L 0.23 tolerated(0.14) benign(0.004) TCGA-EE-A2MD-06 8 134031881 134031881 A T TG Missense_Mutation p.T2273S 0.37 tolerated(0.82) benign(0.009) TCGA-EE-A2MD-06 8 139164781 139164781 G A FAM135B Missense_Mutation p.S646F 0.25 tolerated(0.15) benign(0.01) TCGA-EE-A2MD-06 8 139190802 139190802 G A FAM135B Silent p.L335L 0.32 TCGA-EE-A2MD-06 8 13959988 13959988 G A SGCZ Missense_Mutation p.S214F 0.25 deleterious(0) possibly_damaging(0.877) TCGA-EE-A2MD-06 8 142228931 142228931 C T SLC45A4 Missense_Mutation p.G219S 0.34 tolerated(0.38) benign(0.009) TCGA-EE-A2MD-06 8 142228933 142228933 G A SLC45A4 Missense_Mutation p.P218L 0.33 tolerated(0.06) benign(0.006) TCGA-EE-A2MD-06 8 143412303 143412303 G A TSNARE1 Silent p.S284S 0.23 TCGA-EE-A2MD-06 8 143999038 143999038 C T CYP11B2 Silent p.Q73Q 0.24 TCGA-EE-A2MD-06 8 144874934 144874934 G A SCRIB Missense_Mutation p.P1374L 0.41 probably_damaging(0.999) TCGA-EE-A2MD-06 8 144874935 144874935 G A SCRIB Missense_Mutation p.P1374S 0.41 probably_damaging(0.999) TCGA-EE-A2MD-06 8 144941947 144941947 C T EPPK1 Silent p.E1825E 0.35 TCGA-EE-A2MD-06 8 144945056 144945056 G A EPPK1 Missense_Mutation p.P789L 0.24 possibly_damaging(0.703) TCGA-EE-A2MD-06 8 145094817 145094817 C T SPATC1 Silent p.F73F 0.23 TCGA-EE-A2MD-06 8 145758632 145758632 T A ARHGAP39 Silent p.A922A 0.24 TCGA-EE-A2MD-06 8 146157923 146157923 C T ZNF16 Missense_Mutation p.E84K 0.32 tolerated(0.15) benign(0.188) TCGA-EE-A2MD-06 8 1574988 1574988 C T DLGAP2 Missense_Mutation p.R429C 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A2MD-06 8 16012621 16012621 G A MSR1 Nonsense_Mutation p.R284* 0.35 TCGA-EE-A2MD-06 8 16026357 16026357 C T MSR1 Silent p.T80T 0.26 TCGA-EE-A2MD-06 8 18729234 18729234 G A PSD3 Silent p.S380S 0.35 TCGA-EE-A2MD-06 8 2033405 2033405 G A MYOM2 Silent p.Q509Q 0.13 TCGA-EE-A2MD-06 8 21766797 21766797 G A DOK2 3'UTR 0.23 TCGA-EE-A2MD-06 8 21978728 21978728 G A HR Silent p.S739S 0.34 TCGA-EE-A2MD-06 8 22481737 22481737 G A BIN3 Nonsense_Mutation p.Q160* 0.28 TCGA-EE-A2MD-06 8 22864153 22864153 C T RHOBTB2 Intron 0.39 TCGA-EE-A2MD-06 8 23191094 23191094 G A LOXL2 Silent p.S262S 0.33 TCGA-EE-A2MD-06 8 24201064 24201064 C T ADAM28 Missense_Mutation p.P653S 0.27 deleterious(0.05) probably_damaging(1) TCGA-EE-A2MD-06 8 24339764 24339764 C T ADAM7 Missense_Mutation p.S272L 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MD-06 8 24342819 24342819 G A ADAM7 Missense_Mutation p.G302E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 8 24350052 24350052 G A ADAM7 Missense_Mutation p.G533R 0.19 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MD-06 8 27462697 27462697 G A CLU Silent p.F191F 0.22 TCGA-EE-A2MD-06 8 28625707 28625707 C T INTS9 Missense_Mutation p.V645M 0.33 tolerated(0.13) possibly_damaging(0.553) TCGA-EE-A2MD-06 8 30655114 30655114 C T PPP2CB Missense_Mutation p.A157T 0.26 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MD-06 8 30703036 30703036 G A TEX15 Silent p.P1166P 0.25 TCGA-EE-A2MD-06 8 30889392 30889392 G A PURG Missense_Mutation p.P303S 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MD-06 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.28 probably_damaging(0.999) TCGA-EE-A2MD-06 8 32617975 32617975 C T NRG1 Intron 0.32 TCGA-EE-A2MD-06 8 32621314 32621314 C T NRG1 Silent p.F444F 0.27 TCGA-EE-A2MD-06 8 32621496 32621496 C T NRG1 Missense_Mutation p.S505F 0.42 tolerated(0.12) possibly_damaging(0.857) TCGA-EE-A2MD-06 8 33360971 33360971 A T TTI2 Missense_Mutation p.L412H 0.28 tolerated(0.46) possibly_damaging(0.896) TCGA-EE-A2MD-06 8 37556185 37556185 A G ZNF703 Missense_Mutation p.Y589C 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 8 39486947 39486947 G A ADAM18 Missense_Mutation p.E193K 0.28 deleterious(0.01) possibly_damaging(0.491) TCGA-EE-A2MD-06 8 39646227 39646227 G A ADAM2 Silent p.V201V 0.20 TCGA-EE-A2MD-06 8 39695715 39695715 C T ADAM2 5'UTR 0.28 TCGA-EE-A2MD-06 8 41519069 41519069 C T ANK1 Intron 0.25 TCGA-EE-A2MD-06 8 41790402 41790402 G A KAT6A Missense_Mutation p.S1779F 0.28 unknown(0) TCGA-EE-A2MD-06 8 48751729 48751729 G A PRKDC Silent p.I2510I 0.38 TCGA-EE-A2MD-06 8 52359645 52359645 C T PXDNL Missense_Mutation p.D482N 0.30 tolerated(0.08) possibly_damaging(0.721) TCGA-EE-A2MD-06 8 53074052 53074052 C T ST18 Missense_Mutation p.E493K 0.31 deleterious(0) possibly_damaging(0.794) TCGA-EE-A2MD-06 8 54141822 54141822 C T OPRK1 3'UTR 0.27 TCGA-EE-A2MD-06 8 54142226 54142226 G A OPRK1 Silent p.L258L 0.24 TCGA-EE-A2MD-06 8 55540520 55540520 G A RP1 Missense_Mutation p.E1360K 0.27 deleterious(0.04) benign(0.141) TCGA-EE-A2MD-06 8 57354177 57354177 G A PENK Missense_Mutation p.S153F 0.39 tolerated(0.05) benign(0.036) TCGA-EE-A2MD-06 8 61178492 61178492 G A CA8 Missense_Mutation p.P137S 0.27 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A2MD-06 8 614674 614674 G A ERICH1 Missense_Mutation p.H421Y 0.24 tolerated(0.2) possibly_damaging(0.791) TCGA-EE-A2MD-06 8 614675 614675 G A ERICH1 Silent p.D420D 0.24 TCGA-EE-A2MD-06 8 61736638 61736638 C G CHD7 Intron 0.32 TCGA-EE-A2MD-06 8 66619433 66619433 C T MTFR1 Missense_Mutation p.P236S 0.23 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MD-06 8 67968840 67968840 C T COPS5 Splice_Site p.X192_splice 0.29 TCGA-EE-A2MD-06 8 68179591 68179591 C T ARFGEF1 Silent p.T553T 0.27 TCGA-EE-A2MD-06 8 68423836 68423836 G A CPA6 Silent p.T124T 0.26 TCGA-EE-A2MD-06 8 69136817 69136817 G A PREX2 Silent p.A1577A 0.19 TCGA-EE-A2MD-06 8 70533414 70533414 G A SULF1 Missense_Mutation p.E508K 0.31 tolerated(0.7) benign(0.063) TCGA-EE-A2MD-06 8 70978470 70978470 C A PRDM14 Nonsense_Mutation p.E395* 0.30 TCGA-EE-A2MD-06 8 73849889 73849889 C T KCNB2 Missense_Mutation p.P767S 0.32 tolerated_low_confidence(0.5) benign(0.001) TCGA-EE-A2MD-06 8 76456138 76456138 T C HNF4G Missense_Mutation p.Y61H 0.22 deleterious(0.02) possibly_damaging(0.874) TCGA-EE-A2MD-06 8 77761883 77761883 C T ZFHX4 Missense_Mutation p.L1261F 0.20 possibly_damaging(0.765) TCGA-EE-A2MD-06 8 77761885 77761885 C T ZFHX4 Silent p.L1261L 0.17 TCGA-EE-A2MD-06 8 77764324 77764324 C T ZFHX4 Missense_Mutation p.P1723S 0.34 possibly_damaging(0.803) TCGA-EE-A2MD-06 8 77767828 77767828 G A ZFHX4 Missense_Mutation p.D2891N 0.20 possibly_damaging(0.851) TCGA-EE-A2MD-06 8 7806666 7806666 G A ZNF705B Missense_Mutation p.E10K 0.33 tolerated(0.97) probably_damaging(0.973) TCGA-EE-A2MD-06 8 87386266 87386266 C T WWP1 5'UTR 0.27 TCGA-EE-A2MD-06 8 87738817 87738817 G A CNGB3 Missense_Mutation p.P94S 0.33 tolerated(0.42) benign(0.01) TCGA-EE-A2MD-06 8 87951846 87951846 G A CNBD1 Missense_Mutation p.E99K 0.28 tolerated(0.31) benign(0.007) TCGA-EE-A2MD-06 8 92352659 92352659 G A SLC26A7 Missense_Mutation p.M302I 0.29 tolerated(0.17) benign(0.2) TCGA-EE-A2MD-06 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.23 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A2MD-06 8 96259868 96259868 G A C8orf37 Missense_Mutation p.R201C 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MD-06 8 97892214 97892214 G A CPQ Missense_Mutation p.G277E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 8 99441541 99441541 G A KCNS2 Missense_Mutation p.R445K 0.33 tolerated(0.54) probably_damaging(0.931) TCGA-EE-A2MD-06 9 100888860 100888860 C T CORO2A Missense_Mutation p.E473K 0.20 deleterious(0.02) possibly_damaging(0.526) TCGA-EE-A2MD-06 9 104048497 104048497 C T LPPR1 Nonsense_Mutation p.R122* 0.18 TCGA-EE-A2MD-06 9 104170392 104170392 C T ZNF189 Silent p.F114F 0.50 TCGA-EE-A2MD-06 9 104356900 104356900 C T PPP3R2 Missense_Mutation p.D105N 0.47 tolerated(0.08) benign(0.257) TCGA-EE-A2MD-06 9 104449092 104449092 C T GRIN3A Missense_Mutation p.E364K 0.42 tolerated(0.22) benign(0.004) TCGA-EE-A2MD-06 9 105767772 105767772 G A CYLC2 Missense_Mutation p.D287N 0.30 tolerated_low_confidence(0.88) unknown(0) TCGA-EE-A2MD-06 9 107298427 107298427 G A OR13C3 Missense_Mutation p.S223F 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MD-06 9 107298917 107298917 G A OR13C3 Missense_Mutation p.L60F 0.40 tolerated(0.08) possibly_damaging(0.721) TCGA-EE-A2MD-06 9 107299020 107299020 G A OR13C3 Silent p.F25F 0.27 TCGA-EE-A2MD-06 9 107331514 107331514 G A OR13C8 Silent p.K22K 0.27 TCGA-EE-A2MD-06 9 107331799 107331799 G A OR13C8 Silent p.T117T 0.29 TCGA-EE-A2MD-06 9 107367329 107367329 C T OR13C2 Missense_Mutation p.D194N 0.20 deleterious(0.03) benign(0.004) TCGA-EE-A2MD-06 9 107457211 107457211 G A OR13D1 Missense_Mutation p.G170E 0.32 deleterious(0.01) benign(0.001) TCGA-EE-A2MD-06 9 108536321 108536321 C T TMEM38B Missense_Mutation p.S279L 0.41 tolerated(0.18) benign(0.004) TCGA-EE-A2MD-06 9 111734999 111734999 C T CTNNAL1 Missense_Mutation p.E435K 0.48 tolerated(0.13) possibly_damaging(0.622) TCGA-EE-A2MD-06 9 112778290 112778290 G A PALM2-AKAP2 Missense_Mutation p.E185K 0.40 tolerated(0.15) benign(0.223) TCGA-EE-A2MD-06 9 113251984 113251984 C T SVEP1 Missense_Mutation p.A626T 0.27 probably_damaging(1) TCGA-EE-A2MD-06 9 113563252 113563252 G A MUSK Missense_Mutation p.G865E 0.27 tolerated(0.1) benign(0.002) TCGA-EE-A2MD-06 9 113703937 113703937 C T LPAR1 Nonsense_Mutation p.W186* 0.51 TCGA-EE-A2MD-06 9 114136276 114136276 G A KIAA0368 Missense_Mutation p.P1563S 0.43 deleterious(0.03) possibly_damaging(0.693) TCGA-EE-A2MD-06 9 116269582 116269582 G A RGS3 Silent p.E367E 0.25 TCGA-EE-A2MD-06 9 116823280 116823280 C T AMBP Missense_Mutation p.G318R 0.41 deleterious(0.04) possibly_damaging(0.859) TCGA-EE-A2MD-06 9 117143571 117143571 G A AKNA Silent p.L15L 0.22 TCGA-EE-A2MD-06 9 117520 117520 G A FOXD4 Silent p.F200F 0.47 TCGA-EE-A2MD-06 9 118974097 118974097 G A PAPPA Missense_Mutation p.D602N 0.22 deleterious(0) possibly_damaging(0.822) TCGA-EE-A2MD-06 9 119462014 119462014 C T TRIM32 3'UTR 0.23 TCGA-EE-A2MD-06 9 120470924 120470924 G A TLR4 Silent p.L59L 0.53 TCGA-EE-A2MD-06 9 120470925 120470925 G A TLR4 Missense_Mutation p.D60N 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 9 123201852 123201852 C G CDK5RAP2 Missense_Mutation p.V1183L 0.07 tolerated(0.15) benign(0.001) TCGA-EE-A2MD-06 9 123301373 123301373 C T CDK5RAP2 Silent p.K151K 0.23 TCGA-EE-A2MD-06 9 123886359 123886359 G A CNTRL Missense_Mutation p.E601K 0.30 possibly_damaging(0.579) TCGA-EE-A2MD-06 9 125148901 125148901 G A PTGS1 Missense_Mutation p.V396M 0.21 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MD-06 9 125273119 125273119 C T OR1J2 Silent p.L13L 0.20 TCGA-EE-A2MD-06 9 125281448 125281448 C T OR1J4 Missense_Mutation p.S10F 0.18 deleterious_low_confidence(0.02) benign(0.053) TCGA-EE-A2MD-06 9 125289425 125289425 C T OR1N1 Missense_Mutation p.D50N 0.42 deleterious(0.04) possibly_damaging(0.494) TCGA-EE-A2MD-06 9 125512453 125512453 G A OR1L6 Silent p.G109G 0.41 TCGA-EE-A2MD-06 9 125622240 125622240 G A RC3H2 Missense_Mutation p.P602L 0.47 deleterious(0.01) benign(0.022) TCGA-EE-A2MD-06 9 125901814 125901814 G A STRBP Silent p.T497T 0.13 TCGA-EE-A2MD-06 9 127828290 127828290 C T SCAI Missense_Mutation p.R49K 0.40 deleterious_low_confidence(0) benign(0.14) TCGA-EE-A2MD-06 9 130098439 130098439 C T GARNL3 Silent p.I302I 0.48 TCGA-EE-A2MD-06 9 130425628 130425628 C T STXBP1 Missense_Mutation p.R192W 0.16 deleterious(0) probably_damaging(0.964) TCGA-EE-A2MD-06 9 130482669 130482669 C T TTC16 Nonsense_Mutation p.Q218* 0.47 TCGA-EE-A2MD-06 9 130828896 130828896 G A NAIF1 Missense_Mutation p.A162V 0.47 tolerated(0.15) benign(0.018) TCGA-EE-A2MD-06 9 131247670 131247670 C T ODF2 Silent p.S439S 0.38 TCGA-EE-A2MD-06 9 131260759 131260759 A C ODF2 Missense_Mutation p.I694L 0.26 tolerated(0.09) benign(0.132) TCGA-EE-A2MD-06 9 131353854 131353854 C T SPTAN1 Silent p.L1035L 0.36 TCGA-EE-A2MD-06 9 131559354 131559354 C T TBC1D13 Missense_Mutation p.S135F 0.49 deleterious(0.02) benign(0.067) TCGA-EE-A2MD-06 9 131589467 131589467 C A C9orf114 Missense_Mutation p.R71L 0.33 tolerated(0.06) possibly_damaging(0.565) TCGA-EE-A2MD-06 9 131860856 131860856 G A CRAT Missense_Mutation p.P387S 0.21 deleterious(0.03) possibly_damaging(0.47) TCGA-EE-A2MD-06 9 131870246 131870246 G A CRAT Silent p.S46S 0.12 TCGA-EE-A2MD-06 9 131870247 131870247 G A CRAT Missense_Mutation p.S46F 0.12 deleterious(0) possibly_damaging(0.732) TCGA-EE-A2MD-06 9 133799762 133799762 G A FIBCD1 Missense_Mutation p.H192Y 0.36 deleterious(0.03) possibly_damaging(0.703) TCGA-EE-A2MD-06 9 134366900 134366900 C T PRRC2B Missense_Mutation p.S2105F 0.18 deleterious(0) probably_damaging(0.927) TCGA-EE-A2MD-06 9 134404515 134404515 C T UCK1 Missense_Mutation p.V175I 0.49 tolerated(0.27) possibly_damaging(0.471) TCGA-EE-A2MD-06 9 135042154 135042154 C T NTNG2 5'UTR 0.24 TCGA-EE-A2MD-06 9 136137530 136137530 G A ABO RNA 0.15 TCGA-EE-A2MD-06 9 137630331 137630331 C T COL5A1 Silent p.I467I 0.24 TCGA-EE-A2MD-06 9 137717651 137717651 C T COL5A1 Silent p.V1656V 0.58 TCGA-EE-A2MD-06 9 138555263 138555263 G A LCN9 Silent p.R32R 0.38 TCGA-EE-A2MD-06 9 138556091 138556091 C T LCN9 Silent p.V60V 0.22 TCGA-EE-A2MD-06 9 138556092 138556092 C T LCN9 Missense_Mutation p.R61W 0.23 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2MD-06 9 140242526 140242526 G A EXD3 Silent p.A665A 0.21 TCGA-EE-A2MD-06 9 140953056 140953056 C T CACNA1B Silent p.P1448P 0.47 TCGA-EE-A2MD-06 9 140995575 140995575 G A CACNA1B Intron 0.12 TCGA-EE-A2MD-06 9 16437449 16437449 A T BNC2 Missense_Mutation p.F248Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MD-06 9 21141054 21141054 C T IFNW1 Missense_Mutation p.M172I 0.39 tolerated(0.07) benign(0.378) TCGA-EE-A2MD-06 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.46 TCGA-EE-A2MD-06 9 23692797 23692797 C A ELAVL2 Missense_Mutation p.V280L 0.42 deleterious(0.03) possibly_damaging(0.79) TCGA-EE-A2MD-06 9 26913921 26913921 G A PLAA Missense_Mutation p.S504F 0.39 deleterious(0.01) benign(0.01) TCGA-EE-A2MD-06 9 27524689 27524689 G A IFNK Missense_Mutation p.D119N 0.36 tolerated(0.31) benign(0.055) TCGA-EE-A2MD-06 9 32633981 32633981 G A TAF1L Missense_Mutation p.P533S 0.45 deleterious(0) possibly_damaging(0.888) TCGA-EE-A2MD-06 9 33441961 33441961 G A AQP3 3'UTR 0.47 TCGA-EE-A2MD-06 9 35107468 35107468 G A FAM214B Silent p.S268S 0.51 TCGA-EE-A2MD-06 9 39109266 39109266 G A CNTNAP3 Silent p.V752V 0.23 TCGA-EE-A2MD-06 9 43625386 43625386 G A SPATA31A6 Missense_Mutation p.P1101S 0.28 tolerated(0.64) benign(0.069) TCGA-EE-A2MD-06 9 43626810 43626810 G A SPATA31A6 Missense_Mutation p.S626L 0.23 tolerated(1) benign(0.006) TCGA-EE-A2MD-06 9 43628658 43628658 G A SPATA31A6 Missense_Mutation p.S95L 0.30 tolerated(0.74) benign(0) TCGA-EE-A2MD-06 9 43630529 43630529 G A SPATA31A6 Missense_Mutation p.S58L 0.27 tolerated(0.62) benign(0.162) TCGA-EE-A2MD-06 9 43828092 43828092 G A CNTNAP3B Missense_Mutation p.D450N 0.29 tolerated(0.08) possibly_damaging(0.827) TCGA-EE-A2MD-06 9 4635384 4635384 G A SPATA6L Intron 0.33 TCGA-EE-A2MD-06 9 71628928 71628928 G A PRKACG Silent p.F27F 0.50 TCGA-EE-A2MD-06 9 77339583 77339583 C T TRPM6 Silent p.E2005E 0.43 TCGA-EE-A2MD-06 9 77339584 77339584 T A TRPM6 Missense_Mutation p.E2005V 0.43 tolerated_low_confidence(0.11) benign(0.001) TCGA-EE-A2MD-06 9 77442614 77442614 C T TRPM6 Intron 0.62 TCGA-EE-A2MD-06 9 78711007 78711007 G A PCSK5 Missense_Mutation p.D366N 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MD-06 9 78808202 78808202 G C PCSK5 Intron 0.25 TCGA-EE-A2MD-06 9 79321894 79321894 G A PRUNE2 Missense_Mutation p.P1766S 0.26 tolerated(0.66) benign(0.047) TCGA-EE-A2MD-06 9 80916931 80916931 G A PSAT1 Silent p.R61R 0.20 TCGA-EE-A2MD-06 9 82322050 82322050 G A TLE4 Intron 0.45 TCGA-EE-A2MD-06 9 84230986 84230986 G A TLE1 Missense_Mutation p.R277C 0.40 tolerated(0.11) possibly_damaging(0.806) TCGA-EE-A2MD-06 9 84532213 84532213 C T SPATA31D5P RNA 0.46 TCGA-EE-A2MD-06 9 84532997 84532997 T C SPATA31D5P RNA 0.51 TCGA-EE-A2MD-06 9 84562512 84562512 C T RP11-383M4.6 Intron 0.42 TCGA-EE-A2MD-06 9 847071 847071 C T DMRT1 Missense_Mutation p.P156S 0.42 tolerated(0.99) benign(0.006) TCGA-EE-A2MD-06 9 88844513 88844513 G A C9orf153 Silent p.F2F 0.28 TCGA-EE-A2MD-06 9 90500389 90500389 G A SPATA31E1 Silent p.R329R 0.19 TCGA-EE-A2MD-06 9 90584726 90584726 G A CDK20 Silent p.N224N 0.22 TCGA-EE-A2MD-06 9 91652999 91652999 C T SHC3 Missense_Mutation p.R522K 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MD-06 9 94493352 94493352 G A ROR2 Silent p.A341A 0.54 TCGA-EE-A2MD-06 9 96051797 96051797 C T WNK2 Silent p.P1624P 0.27 TCGA-EE-A2MD-06 9 96859746 96859746 C T PTPDC1 Missense_Mutation p.P298S 0.44 tolerated(0.05) possibly_damaging(0.743) TCGA-EE-A2MD-06 9 97062705 97062705 C T ZNF169 Missense_Mutation p.P289S 0.33 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A2MD-06 9 97062706 97062706 C T ZNF169 Missense_Mutation p.P289L 0.33 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2MD-06 9 97873870 97873870 C T FANCC Missense_Mutation p.G402R 0.26 tolerated(0.12) benign(0.047) TCGA-EE-A2MD-06 X 103267899 103267899 C T H2BFWT Missense_Mutation p.D112N 0.58 deleterious(0.03) benign(0.167) TCGA-EE-A2MD-06 X 105189954 105189954 C T NRK Missense_Mutation p.P1385S 0.65 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MD-06 X 105449605 105449605 A T MUM1L1 Missense_Mutation p.K60N 0.52 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A2MD-06 X 107084242 107084242 C T MID2 Missense_Mutation p.S116F 0.58 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MD-06 X 107447583 107447583 G A COL4A6 Silent p.F250F 0.68 TCGA-EE-A2MD-06 X 107865086 107865086 G A COL4A5 Missense_Mutation p.G911R 0.63 unknown(0) TCGA-EE-A2MD-06 X 109696331 109696331 G A RGAG1 Missense_Mutation p.G829E 0.68 tolerated(0.07) possibly_damaging(0.453) TCGA-EE-A2MD-06 X 11187673 11187673 G A ARHGAP6 Silent p.I587I 0.53 TCGA-EE-A2MD-06 X 11312906 11312906 G A AMELX 5'UTR 0.66 TCGA-EE-A2MD-06 X 117895292 117895292 C T IL13RA1 Intron 0.72 TCGA-EE-A2MD-06 X 123480464 123480464 C T SH2D1A 5'UTR 0.49 TCGA-EE-A2MD-06 X 123539077 123539077 G A TENM1 Missense_Mutation p.S1732F 0.68 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 X 128605256 128605256 T C SMARCA1 Silent p.E830E 0.58 TCGA-EE-A2MD-06 X 128889267 128889267 C T XPNPEP2 Intron 0.43 TCGA-EE-A2MD-06 X 129201362 129201362 G A ELF4 Silent p.L442L 0.77 TCGA-EE-A2MD-06 X 130220398 130220398 C T ARHGAP36 Silent p.I459I 0.69 TCGA-EE-A2MD-06 X 134166496 134166496 C T FAM127A Missense_Mutation p.P28L 0.63 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MD-06 X 134166497 134166497 C T FAM127A Silent p.P28P 0.61 TCGA-EE-A2MD-06 X 135429748 135429748 G A GPR112 Missense_Mutation p.E1295K 0.60 tolerated(0.18) benign(0.031) TCGA-EE-A2MD-06 X 137715134 137715134 C T FGF13 Silent p.K215K 0.63 TCGA-EE-A2MD-06 X 140996286 140996286 G A MAGEC1 Silent p.R1032R 0.83 TCGA-EE-A2MD-06 X 140996397 140996397 C T MAGEC1 Silent p.F1069F 0.54 TCGA-EE-A2MD-06 X 142605203 142605203 G A SPANXN3 Missense_Mutation p.S6F 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MD-06 X 1428361 1428361 G A CSF2RA Missense_Mutation p.E432K 0.28 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A2MD-06 X 142967226 142967226 C T UBE2NL Silent p.I8I 0.51 TCGA-EE-A2MD-06 X 149613849 149613849 C T MAMLD1 Missense_Mutation p.R23C 0.33 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MD-06 X 150345178 150345178 G A GPR50 5'UTR 0.70 TCGA-EE-A2MD-06 X 151283782 151283782 G A RP11-1007I13.4 RNA 0.59 TCGA-EE-A2MD-06 X 151532989 151532989 G A GABRA3 Silent p.F18F 0.60 TCGA-EE-A2MD-06 X 151821814 151821814 C T GABRQ 3'UTR 0.57 TCGA-EE-A2MD-06 X 151870042 151870042 G A MAGEA6 Silent p.K244K 0.57 TCGA-EE-A2MD-06 X 152159968 152159968 C T PNMA5 Missense_Mutation p.E59K 0.74 deleterious(0.02) possibly_damaging(0.657) TCGA-EE-A2MD-06 X 153583356 153583356 G A FLNA Missense_Mutation p.T1685M 0.59 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MD-06 X 153698863 153698863 G A PLXNA3 Missense_Mutation p.A1689T 0.62 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A2MD-06 X 153880690 153880690 C T CTAG2 Missense_Mutation p.G162E 0.71 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MD-06 X 155004345 155004345 G A SPRY3 Missense_Mutation p.R271K 0.31 tolerated(1) benign(0.034) TCGA-EE-A2MD-06 X 15605946 15605946 C T ACE2 Silent p.V244V 0.67 TCGA-EE-A2MD-06 X 15845465 15845466 CT A AP1S2 Frame_Shift_Del p.E152Dfs*5 0.42 TCGA-EE-A2MD-06 X 17818679 17818679 C T RAI2 Silent p.G484G 0.67 TCGA-EE-A2MD-06 X 17819392 17819392 G A RAI2 Missense_Mutation p.P247S 0.67 deleterious(0.01) unknown(0) TCGA-EE-A2MD-06 X 18606210 18606210 C T CDKL5 Missense_Mutation p.P231S 0.68 tolerated_low_confidence(0.07) probably_damaging(0.96) TCGA-EE-A2MD-06 X 24523415 24523415 G A PDK3 Missense_Mutation p.D199N 0.63 deleterious(0.04) benign(0.011) TCGA-EE-A2MD-06 X 2541438 2541438 C T CD99P1 RNA 0.15 TCGA-EE-A2MD-06 X 3241590 3241590 C T MXRA5 Silent p.R712R 0.68 TCGA-EE-A2MD-06 X 35993901 35993901 G A CXorf22 Missense_Mutation p.G862S 0.54 tolerated(0.13) possibly_damaging(0.465) TCGA-EE-A2MD-06 X 47065788 47065788 C T UBA1 Missense_Mutation p.S628F 0.46 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MD-06 X 47516985 47516985 G A UXT Silent p.F90F 0.80 TCGA-EE-A2MD-06 X 50136221 50136221 G A DGKK RNA 0.71 TCGA-EE-A2MD-06 X 57473399 57473399 G A FAAH2 Silent p.G385G 0.70 TCGA-EE-A2MD-06 X 6451920 6451920 G A VCX3A Missense_Mutation p.P143S 0.55 deleterious(0.01) unknown(0) TCGA-EE-A2MD-06 X 65413365 65413365 G A HEPH Silent p.Q472Q 0.32 TCGA-EE-A2MD-06 X 70149631 70149631 C T SLC7A3 Missense_Mutation p.A73T 0.91 deleterious(0.02) possibly_damaging(0.856) TCGA-EE-A2MD-06 X 71425870 71425870 T C ERCC6L Missense_Mutation p.E916G 0.71 tolerated(0.07) benign(0.034) TCGA-EE-A2MD-06 X 75004814 75004814 C T MAGEE2 Missense_Mutation p.E25K 0.44 tolerated_low_confidence(0.41) benign(0.016) TCGA-EE-A2MD-06 X 77529010 77529010 G A CYSLTR1 Silent p.L78L 0.47 TCGA-EE-A2MD-06 X 77529033 77529033 G A CYSLTR1 Missense_Mutation p.L71F 0.54 tolerated(0.08) possibly_damaging(0.599) TCGA-EE-A2MD-06 X 79698500 79698500 G A FAM46D Silent p.G154G 0.55 TCGA-EE-A2MD-06 X 79698637 79698637 C T FAM46D Missense_Mutation p.P200L 0.58 deleterious(0) possibly_damaging(0.692) TCGA-EE-A2MD-06 X 83374994 83374994 C T RPS6KA6 Missense_Mutation p.A230T 0.53 tolerated(0.44) possibly_damaging(0.751) TCGA-EE-A2MD-06 X 86069749 86069749 C T DACH2 Silent p.A532A 0.54 TCGA-EE-A2MD-06 X 91090803 91090803 C T PCDH11X Silent p.I100I 0.59 TCGA-EE-A2MD-06 X 91132680 91132680 C T PCDH11X Missense_Mutation p.P481S 0.53 deleterious(0.03) possibly_damaging(0.604) TCGA-EE-A2ME-06 10 7682790 7682790 C T ITIH5 Missense_Mutation p.E110K 0.07 tolerated(0.08) benign(0.343) TCGA-EE-A2ME-06 11 75298569 75298569 C T MAP6 Silent p.K659K 0.07 TCGA-EE-A2ME-06 12 106838326 106838326 C T POLR3B Missense_Mutation p.P681S 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2ME-06 12 40076667 40076667 G A C12orf40 Missense_Mutation p.R314K 0.08 tolerated(0.95) benign(0.002) TCGA-EE-A2ME-06 12 48134465 48134465 G - RAPGEF3 Frame_Shift_Del p.R731Gfs*39 0.17 TCGA-EE-A2ME-06 14 103932348 103932348 C T MARK3 Missense_Mutation p.P273S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2ME-06 14 23855728 23855728 C T MYH6 Missense_Mutation p.M1585I 0.06 tolerated(1) benign(0.012) TCGA-EE-A2ME-06 14 45403424 45403424 A C KLHL28 Missense_Mutation p.W413G 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ME-06 19 22941513 22941513 C T ZNF99 Missense_Mutation p.E400K 0.09 tolerated(0.56) benign(0.365) TCGA-EE-A2ME-06 1 151553422 151553422 T C TUFT1 Missense_Mutation p.L338S 0.09 deleterious(0.03) possibly_damaging(0.885) TCGA-EE-A2ME-06 1 159683410 159683410 G A CRP Missense_Mutation p.L194F 0.08 tolerated(0.7) benign(0.003) TCGA-EE-A2ME-06 1 160156118 160156118 G A ATP1A4 Missense_Mutation p.D1008N 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2ME-06 1 175336410 175336410 C T TNR Missense_Mutation p.G663R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2ME-06 1 65120413 65120413 C T CACHD1 Missense_Mutation p.S519F 0.06 deleterious(0.01) benign(0.306) TCGA-EE-A2ME-06 1 94568628 94568628 G A ABCA4 Silent p.I171I 0.06 TCGA-EE-A2ME-06 20 35743589 35743589 G A MROH8 Missense_Mutation p.S868F 0.11 tolerated(0.15) benign(0.2) TCGA-EE-A2ME-06 22 37531454 37531454 G A IL2RB Silent p.L244L 0.32 TCGA-EE-A2ME-06 22 42537677 42537677 C T NDUFA6-AS1 3'Flank 0.26 TCGA-EE-A2ME-06 22 44067971 44067971 C G EFCAB6 Missense_Mutation p.A508P 0.09 tolerated(0.17) benign(0.139) TCGA-EE-A2ME-06 22 44966444 44966444 G A LINC00207 RNA 0.13 TCGA-EE-A2ME-06 22 45278915 45278915 T G PHF21B 3'UTR 0.33 TCGA-EE-A2ME-06 22 50217210 50217210 G A BRD1 Silent p.P252P 0.25 TCGA-EE-A2ME-06 3 122002629 122002629 G A CASR Missense_Mutation p.E620K 0.09 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2ME-06 3 124449234 124449234 G A UMPS 5'UTR 0.10 TCGA-EE-A2ME-06 3 48699190 48699190 G A CELSR3 Missense_Mutation p.P293L 0.09 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-EE-A2ME-06 3 64619195 64619195 G A ADAMTS9 Missense_Mutation p.P710S 0.05 deleterious(0.03) benign(0.178) TCGA-EE-A2ME-06 6 109867143 109867143 G A AK9 Missense_Mutation p.A1051V 0.08 tolerated(0.57) benign(0.003) TCGA-EE-A2ME-06 6 41029318 41029318 G A APOBEC2 Missense_Mutation p.C128Y 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A2ME-06 6 75848209 75848209 G A COL12A1 Missense_Mutation p.P1729S 0.16 probably_damaging(1) TCGA-EE-A2ME-06 7 100454734 100454734 C T SLC12A9 Silent p.S231S 0.12 TCGA-EE-A2ME-06 7 130353979 130353979 G T TSGA13 Silent p.R235R 0.06 TCGA-EE-A2ME-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-EE-A2ME-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.11 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2ME-06 7 142494836 142494836 G A TRBJ2-5 Missense_Mutation p.R12Q 0.16 unknown(0) TCGA-EE-A2ME-06 7 146536832 146536832 G A CNTNAP2 Missense_Mutation p.D80N 0.09 tolerated(1) benign(0.147) TCGA-EE-A2ME-06 7 37901707 37901707 G A NME8 Silent p.E116E 0.16 TCGA-EE-A2ME-06 8 145626833 145626833 C A CPSF1 Missense_Mutation p.K99N 0.08 tolerated(0.15) benign(0.221) TCGA-EE-A2ME-06 8 6302290 6302290 C G MCPH1 Silent p.P349P 0.10 TCGA-EE-A2ME-06 8 77765024 77765024 C T ZFHX4 Missense_Mutation p.S1956F 0.09 possibly_damaging(0.683) TCGA-EE-A2ME-06 9 114409479 114409479 C T DNAJC25 Silent p.A143A 0.06 TCGA-EE-A2ME-06 9 139734209 139734209 C T RABL6 Missense_Mutation p.P609S 0.14 tolerated_low_confidence(0.46) benign(0) TCGA-EE-A2ME-06 X 107816837 107816837 C T COL4A5 Missense_Mutation p.P167S 0.09 unknown(0) TCGA-EE-A2ME-06 X 27999214 27999214 C T DCAF8L1 Missense_Mutation p.E80K 0.17 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A2MF-06 10 101370912 101370912 G A SLC25A28 Silent p.S263S 0.76 TCGA-EE-A2MF-06 10 102242085 102242085 A C WNT8B Missense_Mutation p.T190P 0.73 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MF-06 10 104176327 104176327 C T PSD Missense_Mutation p.D157N 0.75 deleterious_low_confidence(0) benign(0.062) TCGA-EE-A2MF-06 10 106982971 106982971 C T SORCS3 Silent p.T944T 0.77 TCGA-EE-A2MF-06 10 107007009 107007009 C T SORCS3 Missense_Mutation p.P1009S 0.78 tolerated(0.25) benign(0.132) TCGA-EE-A2MF-06 10 111893168 111893168 T C ADD3 Missense_Mutation p.V638A 0.79 tolerated(1) benign(0.001) TCGA-EE-A2MF-06 10 115312814 115312814 C T HABP2 5'UTR 0.76 TCGA-EE-A2MF-06 10 117884788 117884788 C T GFRA1 Silent p.R238R 0.79 TCGA-EE-A2MF-06 10 124348535 124348535 G A DMBT1 Missense_Mutation p.R620Q 0.76 tolerated(1) unknown(0) TCGA-EE-A2MF-06 10 124390507 124390507 C T DMBT1 Missense_Mutation p.S1890L 0.64 tolerated(0.38) possibly_damaging(0.837) TCGA-EE-A2MF-06 10 134219018 134219018 C T PWWP2B Silent p.H338H 0.68 TCGA-EE-A2MF-06 10 15115180 15115180 G A OLAH Silent p.K303K 0.45 TCGA-EE-A2MF-06 10 21129779 21129779 C T NEBL Splice_Site p.X410_splice 0.54 TCGA-EE-A2MF-06 10 21141554 21141554 C T NEBL Missense_Mutation p.E310K 0.35 tolerated(0.97) benign(0.034) TCGA-EE-A2MF-06 10 21169800 21169800 C T NEBL Missense_Mutation p.G135R 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MF-06 10 21462766 21462766 C T NEBL-AS1 5'Flank 0.41 TCGA-EE-A2MF-06 10 26802584 26802584 C T APBB1IP Missense_Mutation p.P270S 0.30 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MF-06 10 28233311 28233311 C T ARMC4 Missense_Mutation p.R528K 0.36 tolerated(0.07) possibly_damaging(0.488) TCGA-EE-A2MF-06 10 30316574 30316574 A G KIAA1462 Silent p.L835L 0.41 TCGA-EE-A2MF-06 10 31139282 31139282 G A ZNF438 Missense_Mutation p.P18S 0.49 tolerated(0.24) benign(0.071) TCGA-EE-A2MF-06 10 38343365 38343365 G A ZNF33A Missense_Mutation p.E105K 0.45 tolerated(0.13) benign(0.045) TCGA-EE-A2MF-06 10 45799764 45799764 G A OR13A1 Missense_Mutation p.S36L 0.80 deleterious(0.03) benign(0.177) TCGA-EE-A2MF-06 10 46969249 46969249 C T SYT15 Missense_Mutation p.R71K 0.23 deleterious(0.01) possibly_damaging(0.459) TCGA-EE-A2MF-06 10 50121763 50121763 G A LRRC18 Silent p.L146L 0.84 TCGA-EE-A2MF-06 10 5541194 5541194 G A CALML5 Silent p.L70L 0.43 TCGA-EE-A2MF-06 10 61834906 61834906 G A ANK3 Silent p.D1911D 0.61 TCGA-EE-A2MF-06 10 61834907 61834907 T G ANK3 Missense_Mutation p.D1911A 0.61 probably_damaging(0.986) TCGA-EE-A2MF-06 10 61834949 61834949 G T ANK3 Missense_Mutation p.S1897Y 0.68 probably_damaging(0.979) TCGA-EE-A2MF-06 10 64565056 64565056 G T ADO Silent p.P79P 0.15 TCGA-EE-A2MF-06 10 71010324 71010324 C T HKDC1 Silent p.F584F 0.78 TCGA-EE-A2MF-06 10 91404737 91404737 C T PANK1 Missense_Mutation p.G108E 0.86 deleterious_low_confidence(0) benign(0.17) TCGA-EE-A2MF-06 10 99161087 99161087 C T RRP12 5'UTR 0.76 TCGA-EE-A2MF-06 11 100920673 100920673 T C PGR Silent p.L825L 0.40 TCGA-EE-A2MF-06 11 101374903 101374903 G A TRPC6 Missense_Mutation p.S266L 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 11 102702784 102702784 G A MMP3 3'Flank 0.34 TCGA-EE-A2MF-06 11 106849374 106849374 C T GUCY1A2 Missense_Mutation p.G153E 0.42 tolerated(0.89) benign(0.015) TCGA-EE-A2MF-06 11 109294762 109294762 C T C11orf87 Missense_Mutation p.P135S 0.43 tolerated(0.16) benign(0.002) TCGA-EE-A2MF-06 11 113131019 113131019 C T NCAM1 Missense_Mutation p.T751I 0.28 tolerated(0.12) probably_damaging(1) TCGA-EE-A2MF-06 11 113131020 113131020 C T NCAM1 Silent p.T751T 0.29 TCGA-EE-A2MF-06 11 114401202 114401202 G C NXPE1 Silent p.V34V 0.27 TCGA-EE-A2MF-06 11 116691697 116691697 C T APOA4 Silent p.K359K 0.47 TCGA-EE-A2MF-06 11 121028698 121028698 C T TECTA Missense_Mutation p.S1485F 0.38 deleterious(0) benign(0.309) TCGA-EE-A2MF-06 11 123480592 123480592 C T GRAMD1B Missense_Mutation p.P440S 0.35 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A2MF-06 11 123813782 123813782 G A OR6T1 Missense_Mutation p.S255F 0.37 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A2MF-06 11 124189425 124189425 A G OR8D2 Silent p.S223S 0.41 TCGA-EE-A2MF-06 11 124293964 124293964 G A OR8B4 Silent p.N268N 0.44 TCGA-EE-A2MF-06 11 128781961 128781961 G A KCNJ5 Missense_Mutation p.D265N 0.45 tolerated(0.32) probably_damaging(0.994) TCGA-EE-A2MF-06 11 130069878 130069878 C T ST14 Missense_Mutation p.R614C 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MF-06 11 134253735 134253735 G A B3GAT1 Silent p.L154L 0.18 TCGA-EE-A2MF-06 11 17483346 17483346 C T ABCC8 Silent p.R202R 0.53 TCGA-EE-A2MF-06 11 194454 194454 G A SCGB1C1 3'UTR 0.20 TCGA-EE-A2MF-06 11 22359989 22359989 C G SLC17A6 5'UTR 0.53 TCGA-EE-A2MF-06 11 26660710 26660710 T G ANO3 Missense_Mutation p.L688W 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 11 3427737 3427737 G A TSSC2 RNA 0.42 TCGA-EE-A2MF-06 11 34680128 34680128 A G EHF Missense_Mutation p.N241S 0.31 tolerated(0.13) benign(0.033) TCGA-EE-A2MF-06 11 35338930 35338930 C T SLC1A2 Missense_Mutation p.V51M 0.38 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A2MF-06 11 35492257 35492257 C T PAMR1 Missense_Mutation p.E202K 0.47 tolerated(0.06) possibly_damaging(0.715) TCGA-EE-A2MF-06 11 43283949 43283949 C T HNRNPKP3 RNA 0.45 TCGA-EE-A2MF-06 11 45869047 45869047 G A CRY2 Silent p.A23A 0.57 TCGA-EE-A2MF-06 11 46784672 46784672 G A CKAP5 Missense_Mutation p.L1249F 0.42 tolerated(0.33) benign(0.007) TCGA-EE-A2MF-06 11 46921521 46921522 - G LRP4 Frame_Shift_Ins p.R108Pfs*4 0.31 TCGA-EE-A2MF-06 11 4903600 4903600 C T OR51T1 Silent p.F184F 0.46 TCGA-EE-A2MF-06 11 5079915 5079915 C T OR52E2 Missense_Mutation p.E315K 0.37 tolerated_low_confidence(0.6) benign(0.002) TCGA-EE-A2MF-06 11 5173108 5173108 C T OR52A1 Silent p.L164L 0.49 TCGA-EE-A2MF-06 11 5274470 5274470 G A HBG2 3'UTR 0.54 TCGA-EE-A2MF-06 11 533880 533881 GC - HRAS Frame_Shift_Del p.A59Rfs*32 0.31 TCGA-EE-A2MF-06 11 5345100 5345100 C T OR51B2 Missense_Mutation p.G143E 0.45 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MF-06 11 5364490 5364490 C T OR51B5 Missense_Mutation p.E89K 0.44 tolerated(0.07) benign(0.022) TCGA-EE-A2MF-06 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-EE-A2MF-06 11 55340395 55340395 C T OR4C16 Silent p.P264P 0.40 TCGA-EE-A2MF-06 11 5537107 5537107 C T UBQLNL Missense_Mutation p.E189K 0.44 deleterious(0.01) benign(0.115) TCGA-EE-A2MF-06 11 55433107 55433107 G A OR4C6 Missense_Mutation p.M155I 0.46 tolerated_low_confidence(0.93) benign(0.004) TCGA-EE-A2MF-06 11 55587126 55587126 T C OR5D18 Silent p.N7N 0.40 TCGA-EE-A2MF-06 11 556900 556900 C T C11orf35 Missense_Mutation p.R304Q 0.59 tolerated(0.98) benign(0.003) TCGA-EE-A2MF-06 11 55872723 55872723 T A OR8H2 Missense_Mutation p.F69I 0.27 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2MF-06 11 55889910 55889910 C T OR8H3 Missense_Mutation p.S21F 0.44 deleterious(0.04) benign(0.018) TCGA-EE-A2MF-06 11 55890053 55890053 T A OR8H3 Missense_Mutation p.F69I 0.12 deleterious(0) benign(0.285) TCGA-EE-A2MF-06 11 55890167 55890167 T A OR8H3 Missense_Mutation p.L107M 0.48 deleterious(0.04) possibly_damaging(0.896) TCGA-EE-A2MF-06 11 56058264 56058264 G A OR8H1 Missense_Mutation p.S92F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 11 56237851 56237851 G A OR5M3 Silent p.I41I 0.42 TCGA-EE-A2MF-06 11 58170229 58170229 G A OR5B3 Silent p.F218F 0.41 TCGA-EE-A2MF-06 11 59282982 59282982 G T OR4D9 Missense_Mutation p.M199I 0.49 tolerated(0.13) benign(0.084) TCGA-EE-A2MF-06 11 6190746 6190746 G A OR52B2 Missense_Mutation p.P271S 0.37 tolerated(0.08) probably_damaging(1) TCGA-EE-A2MF-06 11 64085026 64085026 G A TRMT112 5'UTR 0.33 TCGA-EE-A2MF-06 11 64699324 64699324 C T PPP2R5B Missense_Mutation p.S367F 0.40 deleterious(0) possibly_damaging(0.748) TCGA-EE-A2MF-06 11 64722223 64722223 C T C11orf85 Intron 0.34 TCGA-EE-A2MF-06 11 65144483 65144483 G A SLC25A45 Missense_Mutation p.A135V 0.50 tolerated(0.16) benign(0.008) TCGA-EE-A2MF-06 11 66475680 66475680 C T SPTBN2 Missense_Mutation p.A428T 0.32 tolerated(0.13) probably_damaging(0.956) TCGA-EE-A2MF-06 11 66625199 66625199 C T LRFN4 5'UTR 0.49 TCGA-EE-A2MF-06 11 66638663 66638663 G A PC Missense_Mutation p.P165S 0.43 deleterious(0.04) benign(0.192) TCGA-EE-A2MF-06 11 67410242 67410242 C T ACY3 Missense_Mutation p.V305M 0.43 deleterious(0.04) possibly_damaging(0.662) TCGA-EE-A2MF-06 11 69514186 69514186 G A FGF19 Silent p.F165F 0.35 TCGA-EE-A2MF-06 11 71276950 71276950 C T KRTAP5-10 Missense_Mutation p.S106F 0.44 unknown(0) TCGA-EE-A2MF-06 11 9051556 9051556 G C SCUBE2 Missense_Mutation p.T736S 0.38 tolerated(0.09) possibly_damaging(0.492) TCGA-EE-A2MF-06 11 92085754 92085754 C T FAT3 Missense_Mutation p.S159L 0.43 probably_damaging(0.998) TCGA-EE-A2MF-06 11 92715352 92715352 G A MTNR1B Silent p.R321R 0.40 TCGA-EE-A2MF-06 12 101336183 101336183 G A ANO4 Missense_Mutation p.G74E 0.41 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2MF-06 12 107048104 107048104 C T RFX4 Missense_Mutation p.P106L 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 12 109577476 109577476 G A ACACB Missense_Mutation p.R89K 0.42 tolerated_low_confidence(0.27) benign(0.001) TCGA-EE-A2MF-06 12 110983803 110983803 G A PPTC7 Silent p.L162L 0.39 TCGA-EE-A2MF-06 12 110983804 110983804 G A PPTC7 Silent p.F161F 0.39 TCGA-EE-A2MF-06 12 111342456 111342456 G A CCDC63 Silent p.V469V 0.34 TCGA-EE-A2MF-06 12 113532725 113532725 C T DTX1 Silent p.L453L 0.40 TCGA-EE-A2MF-06 12 113537790 113537790 C T RASAL1 Missense_Mutation p.E789K 0.44 tolerated(0.26) benign(0.013) TCGA-EE-A2MF-06 12 11546107 11546107 C T PRB2 Missense_Mutation p.G302E 0.39 tolerated(0.23) unknown(0) TCGA-EE-A2MF-06 12 117993060 117993060 C T KSR2 Missense_Mutation p.D478N 0.52 tolerated(0.15) probably_damaging(1) TCGA-EE-A2MF-06 12 119866561 119866561 G A CCDC60 Missense_Mutation p.R55Q 0.37 tolerated(0.1) probably_damaging(0.917) TCGA-EE-A2MF-06 12 119957972 119957972 G A CCDC60 Missense_Mutation p.E339K 0.43 tolerated(0.37) benign(0.167) TCGA-EE-A2MF-06 12 120984355 120984355 G A RNF10 Missense_Mutation p.G102D 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.691) TCGA-EE-A2MF-06 12 121681916 121681916 G A CAMKK2 Intron 0.34 TCGA-EE-A2MF-06 12 122092264 122092264 C T MORN3 Missense_Mutation p.G127S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 12 122625501 122625501 T C MLXIP Missense_Mutation p.F837L 0.42 deleterious(0.01) benign(0.232) TCGA-EE-A2MF-06 12 123273331 123273331 T G CCDC62 Missense_Mutation p.N175K 0.39 deleterious(0.05) possibly_damaging(0.521) TCGA-EE-A2MF-06 12 125834437 125834437 C A TMEM132B Missense_Mutation p.F164L 0.37 deleterious(0.04) benign(0.019) TCGA-EE-A2MF-06 12 125834438 125834438 C T TMEM132B Missense_Mutation p.P165S 0.37 tolerated(0.11) benign(0.397) TCGA-EE-A2MF-06 12 130926975 130926975 C T RIMBP2 Missense_Mutation p.D291N 0.51 deleterious(0.02) possibly_damaging(0.595) TCGA-EE-A2MF-06 12 14649168 14649168 T C ATF7IP Missense_Mutation p.V1095A 0.48 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MF-06 12 14923946 14923946 C T HIST4H4 Missense_Mutation p.D25N 0.45 tolerated_low_confidence(0.05) benign(0.205) TCGA-EE-A2MF-06 12 2622040 2622040 A T CACNA1C Missense_Mutation p.K427M 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 12 28116513 28116513 C T PTHLH Missense_Mutation p.D98N 0.40 tolerated(0.1) probably_damaging(0.932) TCGA-EE-A2MF-06 12 305954 305954 G A SLC6A12 Silent p.F390F 0.44 TCGA-EE-A2MF-06 12 32134230 32134230 T C KIAA1551 Missense_Mutation p.V114A 0.40 deleterious(0.03) benign(0.082) TCGA-EE-A2MF-06 12 39118672 39118672 C T CPNE8 Silent p.K276K 0.30 TCGA-EE-A2MF-06 12 40646759 40646759 C T LRRK2 Missense_Mutation p.S410L 0.38 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2MF-06 12 43833462 43833462 G A ADAMTS20 Silent p.P852P 0.40 TCGA-EE-A2MF-06 12 4409052 4409052 G A CCND2 Silent p.Q249Q 0.51 TCGA-EE-A2MF-06 12 46601349 46601349 G A SLC38A1 Silent p.F148F 0.32 TCGA-EE-A2MF-06 12 49460443 49460443 G A RHEBL1 Silent p.V78V 0.42 TCGA-EE-A2MF-06 12 50190289 50190289 G A NCKAP5L Missense_Mutation p.P452S 0.41 deleterious(0) possibly_damaging(0.789) TCGA-EE-A2MF-06 12 50384470 50384470 G A RACGAP1 Missense_Mutation p.P607L 0.38 deleterious(0.01) benign(0.043) TCGA-EE-A2MF-06 12 51717903 51717903 G A BIN2 5'UTR 0.46 TCGA-EE-A2MF-06 12 52761180 52761180 G A KRT85 Missense_Mutation p.R4C 0.26 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A2MF-06 12 527770 527770 C T CCDC77 Silent p.R127R 0.40 TCGA-EE-A2MF-06 12 53072387 53072387 G A KRT1 Nonsense_Mutation p.Q249* 0.42 TCGA-EE-A2MF-06 12 53086575 53086575 C T KRT77 Silent p.Q390Q 0.38 TCGA-EE-A2MF-06 12 54971083 54971083 G A PDE1B Missense_Mutation p.E528K 0.38 tolerated_low_confidence(0.22) benign(0.005) TCGA-EE-A2MF-06 12 55886157 55886157 C T OR6C68 5'Flank 0.49 TCGA-EE-A2MF-06 12 55945503 55945503 G A OR6C4 Missense_Mutation p.D165N 0.41 deleterious_low_confidence(0.05) benign(0.011) TCGA-EE-A2MF-06 12 55945843 55945843 C T OR6C4 Missense_Mutation p.S278L 0.33 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A2MF-06 12 56222238 56222238 G C DNAJC14 Missense_Mutation p.H69D 0.35 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-EE-A2MF-06 12 56506767 56506767 C T PA2G4 3'UTR 0.60 TCGA-EE-A2MF-06 12 56558150 56558150 G A SMARCC2 Nonsense_Mutation p.Q1169* 0.44 TCGA-EE-A2MF-06 12 57501992 57501992 G A STAT6 Nonsense_Mutation p.Q24* 0.38 TCGA-EE-A2MF-06 12 57677670 57677670 G A R3HDM2 Missense_Mutation p.L356F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 12 57843869 57843869 C T INHBC 3'UTR 0.45 TCGA-EE-A2MF-06 12 62783684 62783684 C A USP15 Nonsense_Mutation p.S587* 0.44 TCGA-EE-A2MF-06 12 62986581 62986581 C T MON2 3'UTR 0.37 TCGA-EE-A2MF-06 12 6421344 6421344 C T PLEKHG6 5'UTR 0.35 TCGA-EE-A2MF-06 12 6993577 6993577 A G RPL13P5 RNA 0.50 TCGA-EE-A2MF-06 12 7025601 7025601 C T ENO2 Missense_Mutation p.P36S 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MF-06 12 72956643 72956643 G A TRHDE Missense_Mutation p.R577K 0.38 tolerated(1) benign(0) TCGA-EE-A2MF-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.41 TCGA-EE-A2MF-06 12 88926235 88926235 G A KITLG Missense_Mutation p.P59S 0.45 deleterious(0.01) benign(0.186) TCGA-EE-A2MF-06 12 91347590 91347590 C T CCER1 Silent p.E310E 0.56 TCGA-EE-A2MF-06 12 91572281 91572281 C T DCN Missense_Mutation p.G17R 0.45 tolerated(0.76) benign(0.13) TCGA-EE-A2MF-06 12 97137214 97137214 T A C12orf55 Missense_Mutation p.N2418K 0.35 tolerated(1) benign(0) TCGA-EE-A2MF-06 12 97334297 97334297 T C NEDD1 Missense_Mutation p.F417L 0.48 tolerated(0.07) possibly_damaging(0.457) TCGA-EE-A2MF-06 13 101736074 101736074 G A NALCN Missense_Mutation p.P1191S 0.39 deleterious(0) possibly_damaging(0.768) TCGA-EE-A2MF-06 13 113470398 113470398 T C ATP11A Missense_Mutation p.V148A 0.43 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MF-06 13 21562821 21562821 G A LATS2 Silent p.S366S 0.49 TCGA-EE-A2MF-06 13 26923281 26923281 G C CDK8 Missense_Mutation p.V93L 0.29 tolerated(0.37) possibly_damaging(0.456) TCGA-EE-A2MF-06 13 28578206 28578206 G A FLT3 Nonsense_Mutation p.Q989* 0.35 TCGA-EE-A2MF-06 13 28830607 28830607 C T PAN3 Silent p.I393I 0.45 TCGA-EE-A2MF-06 13 28877367 28877367 G A FLT1 Silent p.I1318I 0.45 TCGA-EE-A2MF-06 13 29600837 29600837 C T MTUS2 Missense_Mutation p.P678S 0.38 tolerated(0.1) probably_damaging(1) TCGA-EE-A2MF-06 13 30072639 30072639 G A MTUS2 Missense_Mutation p.E1265K 0.38 deleterious(0.01) benign(0.051) TCGA-EE-A2MF-06 13 32367214 32367214 G A RXFP2 Missense_Mutation p.G592E 0.33 tolerated(0.07) possibly_damaging(0.77) TCGA-EE-A2MF-06 13 38225581 38225581 C T TRPC4 Missense_Mutation p.E634K 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 13 41657086 41657086 G A WBP4 3'UTR 0.50 TCGA-EE-A2MF-06 13 42044674 42044674 G A RGCC 3'UTR 0.51 TCGA-EE-A2MF-06 13 53016526 53016526 C T VPS36 Missense_Mutation p.D51N 0.37 deleterious(0.05) probably_damaging(0.973) TCGA-EE-A2MF-06 13 58206728 58206728 C T PCDH17 Silent p.L16L 0.47 TCGA-EE-A2MF-06 13 73491222 73491222 G A PIBF1 Missense_Mutation p.E550K 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MF-06 13 86369420 86369420 C T SLITRK6 Missense_Mutation p.M408I 0.40 tolerated(0.38) benign(0.002) TCGA-EE-A2MF-06 13 97485242 97485242 C T HS6ST3 Silent p.F402F 0.36 TCGA-EE-A2MF-06 14 104642884 104642884 G A KIF26A Silent p.Q1253Q 0.46 TCGA-EE-A2MF-06 14 105176039 105176039 C T INF2 Missense_Mutation p.P712L 0.41 deleterious(0) unknown(0) TCGA-EE-A2MF-06 14 105847412 105847412 A G PACS2 Missense_Mutation p.E415G 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MF-06 14 106311934 106311934 C T IGHD Silent p.L26L 0.44 TCGA-EE-A2MF-06 14 20344831 20344831 C T OR4K2 Silent p.V135V 0.32 TCGA-EE-A2MF-06 14 20389635 20389635 G A OR4K5 Silent p.R290R 0.27 TCGA-EE-A2MF-06 14 20665813 20665813 T C OR11G2 Silent p.L107L 0.43 TCGA-EE-A2MF-06 14 20711659 20711659 C T OR11H4 Nonsense_Mutation p.Q237* 0.36 TCGA-EE-A2MF-06 14 21792827 21792827 G A RPGRIP1 Missense_Mutation p.E605K 0.35 tolerated(0.11) benign(0.025) TCGA-EE-A2MF-06 14 22690222 22690222 C T TRAV35 Missense_Mutation p.P61S 0.48 deleterious(0.04) possibly_damaging(0.871) TCGA-EE-A2MF-06 14 23862256 23862256 G A MYH6 Missense_Mutation p.S1039F 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 14 24632675 24632675 C T IRF9 Silent p.N151N 0.48 TCGA-EE-A2MF-06 14 24879077 24879077 A G NYNRIN Missense_Mutation p.T693A 0.38 tolerated_low_confidence(0.37) benign(0.001) TCGA-EE-A2MF-06 14 24886412 24886412 G A NYNRIN Silent p.R1819R 0.33 TCGA-EE-A2MF-06 14 36004978 36004978 C T INSM2 Missense_Mutation p.P507L 0.43 tolerated(0.29) benign(0.007) TCGA-EE-A2MF-06 14 50088228 50088228 A G MGAT2 Missense_Mutation p.Q81R 0.41 tolerated(0.45) benign(0) TCGA-EE-A2MF-06 14 51219352 51219352 G C NIN Missense_Mutation p.Q1612E 0.03 tolerated(0.07) benign(0.019) TCGA-EE-A2MF-06 14 52741658 52741658 C T PTGDR Silent p.S352S 0.34 TCGA-EE-A2MF-06 14 54417298 54417298 C T BMP4 Missense_Mutation p.E227K 0.38 tolerated(0.64) benign(0.032) TCGA-EE-A2MF-06 14 55903566 55903566 G A TBPL2 Silent p.T107T 0.31 TCGA-EE-A2MF-06 14 57876124 57876124 A T NAA30 Nonsense_Mutation p.K327* 0.49 TCGA-EE-A2MF-06 14 58063412 58063412 G T SLC35F4 Missense_Mutation p.N68K 0.39 tolerated_low_confidence(0.19) benign(0.001) TCGA-EE-A2MF-06 14 59113377 59113377 G A DACT1 Nonsense_Mutation p.W679* 0.47 TCGA-EE-A2MF-06 14 60591812 60591812 G A PCNXL4 Missense_Mutation p.V741I 0.52 tolerated(0.18) benign(0.084) TCGA-EE-A2MF-06 14 63179352 63179352 G A KCNH5 Intron 0.41 TCGA-EE-A2MF-06 14 65234479 65234479 C T SPTB Missense_Mutation p.V2041M 0.44 deleterious(0.01) possibly_damaging(0.6) TCGA-EE-A2MF-06 14 65267575 65267575 C T SPTB Missense_Mutation p.E259K 0.31 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MF-06 14 65543071 65543071 A T MAX 3'UTR 0.50 TCGA-EE-A2MF-06 14 67940029 67940029 C T TMEM229B 3'UTR 0.42 TCGA-EE-A2MF-06 14 68046546 68046546 G A PLEKHH1 Missense_Mutation p.D1046N 0.23 deleterious(0.03) possibly_damaging(0.556) TCGA-EE-A2MF-06 14 70527628 70527628 C T SLC8A3 Missense_Mutation p.E605K 0.42 tolerated(0.07) benign(0.054) TCGA-EE-A2MF-06 14 70634452 70634452 G A SLC8A3 Nonsense_Mutation p.Q230* 0.34 TCGA-EE-A2MF-06 14 70714427 70714427 G A ADAM21P1 RNA 0.15 TCGA-EE-A2MF-06 14 74364873 74364873 C T ZNF410 Missense_Mutation p.P180L 0.41 deleterious(0) possibly_damaging(0.754) TCGA-EE-A2MF-06 14 74825433 74825433 G A VRTN Silent p.T649T 0.41 TCGA-EE-A2MF-06 14 76429816 76429816 C T TGFB3 Missense_Mutation p.D257N 0.37 tolerated(0.51) benign(0.007) TCGA-EE-A2MF-06 14 76548655 76548655 G A IFT43 Missense_Mutation p.D110N 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 14 77332334 77332334 C T C14orf166B Silent p.I425I 0.30 TCGA-EE-A2MF-06 14 81744849 81744849 G A STON2 Missense_Mutation p.S269L 0.33 tolerated_low_confidence(0.84) benign(0.002) TCGA-EE-A2MF-06 14 86087846 86087846 C T FLRT2 5'UTR 0.47 TCGA-EE-A2MF-06 14 88652299 88652299 G A KCNK10 Silent p.V404V 0.34 TCGA-EE-A2MF-06 14 89148295 89148295 G A EML5 Silent p.T1021T 0.37 TCGA-EE-A2MF-06 14 91763741 91763741 C T CCDC88C Missense_Mutation p.E1292K 0.43 deleterious(0) possibly_damaging(0.484) TCGA-EE-A2MF-06 14 91766381 91766381 C T CCDC88C Silent p.L1223L 0.36 TCGA-EE-A2MF-06 14 95234786 95234786 C T GSC 3'UTR 0.38 TCGA-EE-A2MF-06 14 95679709 95679709 G A CLMN Missense_Mutation p.P152L 0.38 tolerated(0.11) possibly_damaging(0.703) TCGA-EE-A2MF-06 14 96178727 96178727 C T TCL1A Missense_Mutation p.D43N 0.39 tolerated(0.65) benign(0.002) TCGA-EE-A2MF-06 14 96178734 96178734 C T TCL1A Splice_Site p.X41_splice 0.51 TCGA-EE-A2MF-06 15 102359037 102359037 T A OR4F15 Silent p.I216I 0.29 TCGA-EE-A2MF-06 15 20644259 20644259 C T HERC2P3 RNA 0.39 TCGA-EE-A2MF-06 15 21071248 21071248 G A POTEB2 Silent p.I121I 0.17 TCGA-EE-A2MF-06 15 24920976 24920976 C T NPAP1 5'UTR 0.48 TCGA-EE-A2MF-06 15 24921187 24921187 G A NPAP1 Missense_Mutation p.R58K 0.42 tolerated(0.74) benign(0.14) TCGA-EE-A2MF-06 15 25299362 25299362 G A SNORD116-2 RNA 0.41 TCGA-EE-A2MF-06 15 25436568 25436568 G A SNORD115-12 RNA 0.42 TCGA-EE-A2MF-06 15 25925026 25925026 G A ATP10A Missense_Mutation p.P1321L 0.42 tolerated(0.65) benign(0.002) TCGA-EE-A2MF-06 15 26026220 26026220 C T ATP10A Silent p.L200L 0.44 TCGA-EE-A2MF-06 15 33916138 33916138 G A RYR3 Missense_Mutation p.D830N 0.31 benign(0.261) TCGA-EE-A2MF-06 15 34105144 34105144 G A RYR3 Silent p.K3446K 0.34 TCGA-EE-A2MF-06 15 34635360 34635360 C T NOP10 5'UTR 0.29 TCGA-EE-A2MF-06 15 40241392 40241392 C T EIF2AK4 Missense_Mutation p.H146Y 0.49 tolerated(0.79) benign(0.175) TCGA-EE-A2MF-06 15 41863308 41863308 T G TYRO3 Missense_Mutation p.M551R 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2MF-06 15 42058862 42058862 G A MGA Missense_Mutation p.R2861Q 0.46 tolerated(0.23) benign(0.015) TCGA-EE-A2MF-06 15 45555371 45555371 G A SLC28A2 Silent p.K125K 0.42 TCGA-EE-A2MF-06 15 45779808 45779808 G A SLC30A4 Missense_Mutation p.P306L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 15 50521197 50521197 G A SLC27A2 Missense_Mutation p.D505N 0.58 tolerated(0.09) benign(0.158) TCGA-EE-A2MF-06 15 52564870 52564870 C T MYO5C Silent p.G219G 0.29 TCGA-EE-A2MF-06 15 57823921 57823921 G A CGNL1 Missense_Mutation p.E1079K 0.51 deleterious(0.02) benign(0.309) TCGA-EE-A2MF-06 15 57837893 57837893 G A CGNL1 Missense_Mutation p.D1202N 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 15 57929945 57929945 G T GCOM1 Missense_Mutation p.G329V 0.46 tolerated(0.11) benign(0.059) TCGA-EE-A2MF-06 15 65448155 65448155 G A CLPX Missense_Mutation p.P396S 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MF-06 15 65490650 65490650 G A CILP Silent p.G658G 0.44 TCGA-EE-A2MF-06 15 65983580 65983580 T A DENND4A Missense_Mutation p.S1117C 0.50 deleterious(0.02) benign(0.438) TCGA-EE-A2MF-06 15 69335086 69335086 C T NOX5 Missense_Mutation p.R530C 0.23 tolerated(0.18) benign(0.001) TCGA-EE-A2MF-06 15 71188216 71188216 C T LRRC49 Missense_Mutation p.S50L 0.18 tolerated_low_confidence(0.18) benign(0.135) TCGA-EE-A2MF-06 15 75798248 75798248 A G PTPN9 Missense_Mutation p.W246R 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 15 78485846 78485846 A G ACSBG1 Splice_Site p.X221_splice 0.52 TCGA-EE-A2MF-06 15 86312415 86312415 C T KLHL25 Silent p.V209V 0.55 TCGA-EE-A2MF-06 15 95022359 95022359 G A MCTP2 3'UTR 0.31 TCGA-EE-A2MF-06 15 99459265 99459265 C T IGF1R Missense_Mutation p.P634L 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 15 99670775 99670775 G A SYNM Missense_Mutation p.R736K 0.74 tolerated(0.2) benign(0.078) TCGA-EE-A2MF-06 16 14947797 14947797 C T NOMO1 Missense_Mutation p.P293S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 16 14951449 14951449 T C NOMO1 Missense_Mutation p.F386S 0.27 deleterious(0.03) benign(0.33) TCGA-EE-A2MF-06 16 16296029 16296029 G A ABCC6 Silent p.F335F 0.23 TCGA-EE-A2MF-06 16 20554316 20554316 C T ACSM2B Missense_Mutation p.E477K 0.39 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MF-06 16 20696554 20696554 G A ACSM1 Missense_Mutation p.P122S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 16 20803563 20803563 G A ACSM3 Missense_Mutation p.R487Q 0.40 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A2MF-06 16 20955866 20955866 G A DNAH3 Silent p.V3821V 0.40 TCGA-EE-A2MF-06 16 23364224 23364224 G A SCNN1B Silent p.R138R 0.38 TCGA-EE-A2MF-06 16 24226088 24226088 G A PRKCB Missense_Mutation p.G658E 0.40 deleterious(0) benign(0.371) TCGA-EE-A2MF-06 16 24226094 24226094 C T PRKCB Missense_Mutation p.S660F 0.36 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MF-06 16 27226198 27226198 T G KDM8 Missense_Mutation p.L261V 0.45 tolerated(0.47) benign(0.019) TCGA-EE-A2MF-06 16 2757318 2757318 C T KCTD5 Missense_Mutation p.S232L 0.41 deleterious(0.03) benign(0.067) TCGA-EE-A2MF-06 16 2854974 2854974 C T PRSS41 RNA 0.50 TCGA-EE-A2MF-06 16 2870993 2870993 C T PRSS21 Silent p.V196V 0.42 TCGA-EE-A2MF-06 16 29824868 29824868 G A PRRT2 Missense_Mutation p.D165N 0.36 tolerated_low_confidence(0.06) benign(0.013) TCGA-EE-A2MF-06 16 29998716 29998716 T A TAOK2 Silent p.V1041V 0.44 TCGA-EE-A2MF-06 16 31072478 31072478 C A ZNF668 Nonsense_Mutation p.E614* 0.44 TCGA-EE-A2MF-06 16 31091618 31091618 C T ZNF646 Nonsense_Mutation p.Q1325* 0.51 TCGA-EE-A2MF-06 16 31471028 31471028 C T ARMC5 Silent p.F61F 0.53 TCGA-EE-A2MF-06 16 3255167 3255167 G A OR1F1 Silent p.R307R 0.36 TCGA-EE-A2MF-06 16 4557778 4557778 A G HMOX2 Missense_Mutation p.D90G 0.35 deleterious(0.01) benign(0.137) TCGA-EE-A2MF-06 16 49671911 49671911 C T ZNF423 Silent p.P384P 0.35 TCGA-EE-A2MF-06 16 51171035 51171035 G A SALL1 Silent p.I1321I 0.42 TCGA-EE-A2MF-06 16 52473848 52473848 G A TOX3 Silent p.I340I 0.42 TCGA-EE-A2MF-06 16 56396746 56396746 G A AMFR 3'UTR 0.55 TCGA-EE-A2MF-06 16 58314192 58314192 A C PRSS54 Missense_Mutation p.L375W 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 16 602523 602523 C T CAPN15 Silent p.A910A 0.52 TCGA-EE-A2MF-06 16 602524 602524 C T CAPN15 Missense_Mutation p.P911S 0.54 tolerated(0.31) benign(0.002) TCGA-EE-A2MF-06 16 67470637 67470637 G A HSD11B2 Missense_Mutation p.D317N 0.37 deleterious(0.05) possibly_damaging(0.754) TCGA-EE-A2MF-06 16 71604618 71604618 G A TAT Silent p.I292I 0.46 TCGA-EE-A2MF-06 16 71710379 71710379 G A PHLPP2 Missense_Mutation p.S481F 0.41 tolerated(0.84) possibly_damaging(0.486) TCGA-EE-A2MF-06 16 72184710 72184710 C T PMFBP1 Missense_Mutation p.E145K 0.34 tolerated(0.13) probably_damaging(0.987) TCGA-EE-A2MF-06 16 72828641 72828641 G A ZFHX3 Missense_Mutation p.T2647I 0.42 unknown(0) TCGA-EE-A2MF-06 16 76461483 76461483 C T CNTNAP4 Silent p.F150F 0.36 TCGA-EE-A2MF-06 16 7680645 7680645 C T RBFOX1 Silent p.S259S 0.41 TCGA-EE-A2MF-06 16 77910323 77910323 G A VAT1L Missense_Mutation p.G260E 0.38 tolerated(0.91) possibly_damaging(0.703) TCGA-EE-A2MF-06 16 80654688 80654688 C T CDYL2 Missense_Mutation p.E327K 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MF-06 16 81934290 81934290 G A PLCG2 Missense_Mutation p.E423K 0.34 tolerated(0.65) possibly_damaging(0.639) TCGA-EE-A2MF-06 17 10298450 10298450 C T MYH8 Silent p.K1654K 0.41 TCGA-EE-A2MF-06 17 10300158 10300158 A C MYH8 Missense_Mutation p.C1442G 0.35 deleterious(0.01) benign(0.217) TCGA-EE-A2MF-06 17 10304939 10304939 G A MYH8 Missense_Mutation p.S951L 0.41 deleterious(0.02) possibly_damaging(0.559) TCGA-EE-A2MF-06 17 10399748 10399748 C T MYH1 Missense_Mutation p.R1592K 0.38 tolerated(0.21) possibly_damaging(0.863) TCGA-EE-A2MF-06 17 11659920 11659920 G A DNAH9 Silent p.L2258L 0.39 TCGA-EE-A2MF-06 17 11666863 11666863 G A DNAH9 Missense_Mutation p.E2368K 0.45 benign(0.051) TCGA-EE-A2MF-06 17 11757633 11757633 G A DNAH9 Missense_Mutation p.R3274K 0.32 benign(0.004) TCGA-EE-A2MF-06 17 11886657 11886657 T G ZNF18 Silent p.I273I 0.39 TCGA-EE-A2MF-06 17 21319242 21319242 C T KCNJ12 Silent p.F196F 0.16 TCGA-EE-A2MF-06 17 26864179 26864179 C T FOXN1 Missense_Mutation p.P558S 0.46 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A2MF-06 17 28511789 28511789 T G NSRP1 Missense_Mutation p.D258E 0.45 tolerated(0.38) benign(0.02) TCGA-EE-A2MF-06 17 3119589 3119589 C T OR1A1 Silent p.F225F 0.43 TCGA-EE-A2MF-06 17 31350959 31350959 C T ASIC2 Silent p.E423E 0.44 TCGA-EE-A2MF-06 17 34257761 34257761 C T RDM1 5'UTR 0.32 TCGA-EE-A2MF-06 17 34499220 34499220 C T TBC1D3B Missense_Mutation p.G164E 0.21 deleterious(0) possibly_damaging(0.768) TCGA-EE-A2MF-06 17 35478401 35478401 C T ACACA Silent p.Q2050Q 0.48 TCGA-EE-A2MF-06 17 38816460 38816460 C T KRT222 Splice_Site p.X76_splice 0.40 TCGA-EE-A2MF-06 17 40639207 40639207 T C ATP6V0A1 Missense_Mutation p.V289A 0.44 deleterious(0.01) possibly_damaging(0.816) TCGA-EE-A2MF-06 17 42330613 42330613 G A SLC4A1 Silent p.T728T 0.46 TCGA-EE-A2MF-06 17 42330614 42330614 G A SLC4A1 Missense_Mutation p.T728I 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 17 43321188 43321188 C T FMNL1 Silent p.F748F 0.42 TCGA-EE-A2MF-06 17 43911206 43911206 A T CRHR1 Missense_Mutation p.E381D 0.35 deleterious(0.01) benign(0.038) TCGA-EE-A2MF-06 17 43912008 43912008 A T CRHR1 Nonsense_Mutation p.K405* 0.40 TCGA-EE-A2MF-06 17 45755530 45755530 A - KPNB1 Frame_Shift_Del p.Q741Rfs*18 0.31 TCGA-EE-A2MF-06 17 46847149 46847149 C T TTLL6 Missense_Mutation p.G784E 0.35 tolerated(1) benign(0.001) TCGA-EE-A2MF-06 17 4789836 4789836 C T MINK1 Silent p.F288F 0.42 TCGA-EE-A2MF-06 17 48156850 48156850 C T ITGA3 Missense_Mutation p.P879S 0.43 tolerated(0.42) benign(0.373) TCGA-EE-A2MF-06 17 48270008 48270008 C T COL1A1 Missense_Mutation p.G641E 0.41 unknown(0) TCGA-EE-A2MF-06 17 48452995 48452995 C T EME1 Silent p.I142I 0.41 TCGA-EE-A2MF-06 17 48632654 48632654 C T SPATA20 Missense_Mutation p.S740F 0.42 deleterious(0) possibly_damaging(0.754) TCGA-EE-A2MF-06 17 5015191 5015191 C T ZNF232 5'UTR 0.36 TCGA-EE-A2MF-06 17 53237185 53237185 C T STXBP4 Silent p.I525I 0.41 TCGA-EE-A2MF-06 17 5462406 5462406 T A NLRP1 Missense_Mutation p.K537M 0.45 deleterious(0) benign(0.375) TCGA-EE-A2MF-06 17 56233203 56233203 G A OR4D1 Missense_Mutation p.G230E 0.35 tolerated(0.07) benign(0.11) TCGA-EE-A2MF-06 17 56388294 56388294 G A BZRAP1 Missense_Mutation p.P1121L 0.36 deleterious(0.03) benign(0.013) TCGA-EE-A2MF-06 17 56619270 56619270 G A C17orf47 Missense_Mutation p.S540F 0.35 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A2MF-06 17 58511558 58511558 C T C17orf64 3'Flank 0.38 TCGA-EE-A2MF-06 17 58525003 58525003 G A APPBP2 Missense_Mutation p.S566F 0.38 tolerated(0.16) benign(0.027) TCGA-EE-A2MF-06 17 59489531 59489531 C A C17orf82 Missense_Mutation p.D65E 0.32 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-EE-A2MF-06 17 60742020 60742020 G A MRC2 Nonsense_Mutation p.W77* 0.44 TCGA-EE-A2MF-06 17 60765983 60765983 G A MRC2 Silent p.G1061G 0.46 TCGA-EE-A2MF-06 17 61829298 61829298 A G CCDC47 Splice_Site p.X457_splice 0.39 TCGA-EE-A2MF-06 17 66986991 66986991 C T ABCA9 Missense_Mutation p.R1275Q 0.42 tolerated(0.33) benign(0.003) TCGA-EE-A2MF-06 17 67197708 67197708 G A ABCA10 Missense_Mutation p.P370S 0.51 tolerated(1) benign(0.002) TCGA-EE-A2MF-06 17 72366762 72366762 T G GPR142 Missense_Mutation p.V154G 0.41 deleterious(0.04) possibly_damaging(0.741) TCGA-EE-A2MF-06 17 72435915 72435915 G A GPRC5C Silent p.R45R 0.44 TCGA-EE-A2MF-06 17 72518810 72518810 T G CD300LB 3'UTR 0.30 TCGA-EE-A2MF-06 17 72694588 72694588 G A CD300LF Missense_Mutation p.P160L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 17 76171072 76171072 G A TK1 Intron 0.53 TCGA-EE-A2MF-06 17 78082287 78082287 G A GAA Splice_Site p.X359_splice 0.45 TCGA-EE-A2MF-06 17 79620252 79620252 A G PDE6G Silent p.P28P 0.41 TCGA-EE-A2MF-06 17 9632212 9632212 C T USP43 Missense_Mutation p.P1093S 0.41 tolerated(0.16) benign(0.029) TCGA-EE-A2MF-06 18 21526238 21526238 G A LAMA3 Missense_Mutation p.G3114E 0.37 benign(0.02) TCGA-EE-A2MF-06 18 28916455 28916455 G A DSG1 Missense_Mutation p.G382S 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MF-06 18 31325069 31325069 T C ASXL3 Silent p.L1753L 0.52 TCGA-EE-A2MF-06 18 31325440 31325440 A G ASXL3 Silent p.Q1876Q 0.45 TCGA-EE-A2MF-06 18 42531060 42531060 G A SETBP1 Silent p.K585K 0.40 TCGA-EE-A2MF-06 18 43310340 43310340 G A SLC14A1 Missense_Mutation p.E75K 0.40 tolerated(0.3) benign(0.015) TCGA-EE-A2MF-06 18 48190730 48190730 C T MAPK4 Silent p.L134L 0.47 TCGA-EE-A2MF-06 18 50985602 50985602 G A DCC Silent p.K1131K 0.43 TCGA-EE-A2MF-06 18 52942943 52942943 C T TCF4 Silent p.G334G 0.40 TCGA-EE-A2MF-06 18 54694330 54694330 G A WDR7 Silent p.A1455A 0.33 TCGA-EE-A2MF-06 18 59157987 59157987 C T CDH20 Silent p.F67F 0.40 TCGA-EE-A2MF-06 18 5969445 5969445 G A L3MBTL4 Missense_Mutation p.P530S 0.42 deleterious(0) possibly_damaging(0.782) TCGA-EE-A2MF-06 18 61565017 61565017 C T SERPINB2 Silent p.F158F 0.30 TCGA-EE-A2MF-06 18 6851122 6851122 C T ARHGAP28 Silent p.S52S 0.43 TCGA-EE-A2MF-06 18 6876188 6876188 G A ARHGAP28 Missense_Mutation p.G265E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 18 76752552 76752552 G A SALL3 Silent p.A187A 0.50 TCGA-EE-A2MF-06 19 10077009 10077009 G A COL5A3 Missense_Mutation p.P1588L 0.43 unknown(0) TCGA-EE-A2MF-06 19 10169537 10169537 C T C3P1 RNA 0.45 TCGA-EE-A2MF-06 19 1095392 1095392 G A POLR2E 5'UTR 0.55 TCGA-EE-A2MF-06 19 14710852 14710852 G A CLEC17A Missense_Mutation p.R251Q 0.44 tolerated(0.26) possibly_damaging(0.775) TCGA-EE-A2MF-06 19 14730171 14730171 C T EMR3 3'UTR 0.47 TCGA-EE-A2MF-06 19 14938507 14938507 G A OR7A5 Nonsense_Mutation p.Q183* 0.44 TCGA-EE-A2MF-06 19 15067485 15067485 C T SLC1A6 Silent p.G324G 0.31 TCGA-EE-A2MF-06 19 15073069 15073069 G A SLC1A6 Missense_Mutation p.P227L 0.38 tolerated(0.67) benign(0.001) TCGA-EE-A2MF-06 19 17000949 17000949 C T F2RL3 Silent p.R225R 0.36 TCGA-EE-A2MF-06 19 17068707 17068707 C T CPAMD8 Silent p.R791R 0.41 TCGA-EE-A2MF-06 19 17330493 17330493 G A USE1 Silent p.T217T 0.51 TCGA-EE-A2MF-06 19 17720797 17720797 T G UNC13A Missense_Mutation p.K1588T 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 19 1826952 1826952 G A REXO1 Silent p.P612P 0.33 TCGA-EE-A2MF-06 19 18991213 18991213 G A CERS1 Silent p.L208L 0.57 TCGA-EE-A2MF-06 19 1918277 1918277 C T SCAMP4 Silent p.A96A 0.59 TCGA-EE-A2MF-06 19 19387373 19387373 G A SUGP1 3'UTR 0.44 TCGA-EE-A2MF-06 19 24010594 24010594 G A RPSAP58 Missense_Mutation p.E211K 0.35 tolerated(0.11) benign(0.339) TCGA-EE-A2MF-06 19 30935544 30935544 T C ZNF536 Missense_Mutation p.F359L 0.37 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MF-06 19 39008006 39008006 G A RYR1 Silent p.G3231G 0.49 TCGA-EE-A2MF-06 19 40221999 40221999 C T CLC 3'UTR 0.45 TCGA-EE-A2MF-06 19 40411993 40411993 G A FCGBP Missense_Mutation p.S1212F 0.39 probably_damaging(0.997) TCGA-EE-A2MF-06 19 40581982 40581982 C T ZNF780A Missense_Mutation p.E124K 0.33 tolerated(0.67) benign(0.003) TCGA-EE-A2MF-06 19 41089548 41089548 C T SHKBP1 Missense_Mutation p.L364F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 19 41848150 41848150 C T TGFB1 Missense_Mutation p.E213K 0.39 tolerated(0.58) benign(0.005) TCGA-EE-A2MF-06 19 42085743 42085743 C T CEACAM21 Silent p.T154T 0.46 TCGA-EE-A2MF-06 19 42473728 42473728 C T ATP1A3 Missense_Mutation p.M862I 0.44 tolerated(0.26) possibly_damaging(0.844) TCGA-EE-A2MF-06 19 42914822 42914822 C T LIPE Silent p.L352L 0.50 TCGA-EE-A2MF-06 19 43683194 43683194 C T PSG5 Intron 0.42 TCGA-EE-A2MF-06 19 44153050 44153050 A C PLAUR Missense_Mutation p.W334G 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-EE-A2MF-06 19 44426405 44426405 A T ZNF45 Intron 0.45 TCGA-EE-A2MF-06 19 44831935 44831935 A G ZNF112 Missense_Mutation p.V798A 0.42 deleterious(0.02) possibly_damaging(0.747) TCGA-EE-A2MF-06 19 45316556 45316556 G A BCAM Nonsense_Mutation p.W185* 0.40 TCGA-EE-A2MF-06 19 4538735 4538735 G A LRG1 Silent p.L87L 0.51 TCGA-EE-A2MF-06 19 46417689 46417689 A C NANOS2 Missense_Mutation p.V88G 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 19 49013730 49013730 C T LMTK3 Missense_Mutation p.D95N 0.50 benign(0.245) TCGA-EE-A2MF-06 19 49391365 49391365 G A TULP2 Missense_Mutation p.P264S 0.38 tolerated(0.06) possibly_damaging(0.46) TCGA-EE-A2MF-06 19 50102853 50102853 C T PRR12 Missense_Mutation p.P1335S 0.50 possibly_damaging(0.803) TCGA-EE-A2MF-06 19 50882336 50882336 C T NR1H2 Silent p.I275I 0.52 TCGA-EE-A2MF-06 19 51215327 51215327 C T SHANK1 Silent p.R279R 0.39 TCGA-EE-A2MF-06 19 51465129 51465129 G A KLK6 Silent p.F151F 0.44 TCGA-EE-A2MF-06 19 51628223 51628223 A G SIGLEC9 5'UTR 0.41 TCGA-EE-A2MF-06 19 51768652 51768652 C A SIGLECL1 Missense_Mutation p.S18Y 0.50 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2MF-06 19 51920574 51920574 G A SIGLEC10 Silent p.F61F 0.44 TCGA-EE-A2MF-06 19 51986533 51986533 G A CEACAM18 Silent p.R373R 0.38 TCGA-EE-A2MF-06 19 52023351 52023351 G A SIGLEC6 Silent p.I449I 0.35 TCGA-EE-A2MF-06 19 52919060 52919060 C T ZNF528 Missense_Mutation p.H319Y 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.48 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A2MF-06 19 53770361 53770361 G A VN1R4 Silent p.F186F 0.27 TCGA-EE-A2MF-06 19 54297261 54297261 C T NLRP12 3'UTR 0.25 TCGA-EE-A2MF-06 19 55179210 55179210 G A LILRB4 Missense_Mutation p.R389K 0.37 tolerated(0.25) benign(0.001) TCGA-EE-A2MF-06 19 55378221 55378221 A C KIR3DL2 3'UTR 0.48 TCGA-EE-A2MF-06 19 55396831 55396831 C T FCAR Silent p.F85F 0.40 TCGA-EE-A2MF-06 19 55444986 55444986 A T NLRP7 Missense_Mutation p.F865I 0.46 tolerated(0.42) benign(0.012) TCGA-EE-A2MF-06 19 55966703 55966703 G A ISOC2 Missense_Mutation p.P131S 0.21 deleterious_low_confidence(0) benign(0.005) TCGA-EE-A2MF-06 19 56320494 56320494 G A NLRP11 Silent p.F494F 0.38 TCGA-EE-A2MF-06 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.37 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2MF-06 19 56466505 56466505 G A NLRP8 Missense_Mutation p.E361K 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2MF-06 19 56467272 56467272 C T NLRP8 Silent p.I616I 0.45 TCGA-EE-A2MF-06 19 56539800 56539800 G A NLRP5 Missense_Mutation p.R734Q 0.40 tolerated(0.63) benign(0.009) TCGA-EE-A2MF-06 19 56969613 56969613 A T ZNF667 Missense_Mutation p.L55H 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2MF-06 19 57325315 57325315 G A PEG3 Nonsense_Mutation p.Q1499* 0.39 TCGA-EE-A2MF-06 19 5786501 5786501 A G DUS3L Silent p.G513G 0.28 TCGA-EE-A2MF-06 19 6433510 6433510 G A SLC25A41 Silent p.L65L 0.41 TCGA-EE-A2MF-06 19 6693046 6693046 G A C3 Silent p.I1093I 0.43 TCGA-EE-A2MF-06 19 6760924 6760924 C T SH2D3A Silent p.V48V 0.39 TCGA-EE-A2MF-06 19 8138105 8138105 G C FBN3 Missense_Mutation p.C2593W 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 19 9001894 9001894 G A MUC16 Missense_Mutation p.P13452S 0.46 probably_damaging(0.991) TCGA-EE-A2MF-06 19 9057582 9057582 G A MUC16 Missense_Mutation p.T9955I 0.38 unknown(0) TCGA-EE-A2MF-06 19 9072036 9072036 G A MUC16 Missense_Mutation p.S5137F 0.39 unknown(0) TCGA-EE-A2MF-06 19 9075374 9075374 C T MUC16 Missense_Mutation p.M4024I 0.40 unknown(0) TCGA-EE-A2MF-06 19 9076820 9076820 G A MUC16 Silent p.I3542I 0.33 TCGA-EE-A2MF-06 19 9076887 9076887 G A MUC16 Missense_Mutation p.S3520L 0.35 unknown(0) TCGA-EE-A2MF-06 1 101188810 101188810 T C VCAM1 Missense_Mutation p.V192A 0.38 tolerated(1) benign(0.003) TCGA-EE-A2MF-06 1 103444439 103444439 G A COL11A1 Missense_Mutation p.P896S 0.35 unknown(0) TCGA-EE-A2MF-06 1 110091367 110091367 G A GNAI3 Missense_Mutation p.D9N 0.34 tolerated(0.07) benign(0.326) TCGA-EE-A2MF-06 1 110230843 110230843 G A GSTM1 Missense_Mutation p.E30K 0.42 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A2MF-06 1 11087497 11087497 C T MASP2 Silent p.L502L 0.40 TCGA-EE-A2MF-06 1 1120532 1120532 G A TTLL10 Intron 0.39 TCGA-EE-A2MF-06 1 114438367 114438367 G A AP4B1 Intron 0.35 TCGA-EE-A2MF-06 1 114516050 114516050 C T HIPK1 Silent p.S1183S 0.38 TCGA-EE-A2MF-06 1 115168055 115168055 G A DENND2C Missense_Mutation p.S184L 0.43 tolerated(0.37) benign(0.005) TCGA-EE-A2MF-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.42 deleterious(0.01) benign(0.045) TCGA-EE-A2MF-06 1 115401232 115401232 G A SYCP1 Nonsense_Mutation p.W119* 0.38 TCGA-EE-A2MF-06 1 11561905 11561905 G A PTCHD2 Missense_Mutation p.E286K 0.44 tolerated(0.15) probably_damaging(0.993) TCGA-EE-A2MF-06 1 117311323 117311323 G A CD2 Missense_Mutation p.G325D 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 1 120437341 120437341 C T ADAM30 Missense_Mutation p.G540E 0.44 tolerated(0.1) possibly_damaging(0.714) TCGA-EE-A2MF-06 1 12266803 12266803 C T TNFRSF1B Missense_Mutation p.S371F 0.42 deleterious(0.02) possibly_damaging(0.622) TCGA-EE-A2MF-06 1 12907852 12907852 C T HNRNPCL1 Silent p.V97V 0.14 TCGA-EE-A2MF-06 1 12918948 12918948 G A PRAMEF2 Missense_Mutation p.M28I 0.31 deleterious(0) benign(0.003) TCGA-EE-A2MF-06 1 1396133 1396133 C T ATAD3C Silent p.F272F 0.44 TCGA-EE-A2MF-06 1 145558498 145558498 G A ANKRD35 Missense_Mutation p.D147N 0.41 tolerated(0.38) probably_damaging(0.945) TCGA-EE-A2MF-06 1 145560240 145560240 G A ANKRD35 Silent p.L242L 0.47 TCGA-EE-A2MF-06 1 147094285 147094285 C G BCL9 Missense_Mutation p.S1039C 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A2MF-06 1 149916222 149916222 G A OTUD7B Missense_Mutation p.S689F 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-EE-A2MF-06 1 151754010 151754010 G A TDRKH Missense_Mutation p.P60S 0.43 deleterious(0) probably_damaging(0.951) TCGA-EE-A2MF-06 1 151786028 151786028 G A RORC Silent p.F334F 0.50 TCGA-EE-A2MF-06 1 154112300 154112300 C T NUP210L Missense_Mutation p.R232Q 0.40 tolerated(0.05) benign(0.087) TCGA-EE-A2MF-06 1 154558739 154558739 G A ADAR Silent p.I1040I 0.48 TCGA-EE-A2MF-06 1 156146255 156146255 G A SEMA4A Missense_Mutation p.A585T 0.43 tolerated(0.59) benign(0.072) TCGA-EE-A2MF-06 1 156874633 156874633 C T PEAR1 Silent p.C65C 0.46 TCGA-EE-A2MF-06 1 157765784 157765784 G A FCRL1 3'UTR 0.50 TCGA-EE-A2MF-06 1 158151329 158151329 G A CD1D Nonsense_Mutation p.W49* 0.45 TCGA-EE-A2MF-06 1 158325966 158325966 G A CD1E Intron 0.26 TCGA-EE-A2MF-06 1 158436035 158436035 C T OR10K1 Silent p.I228I 0.42 TCGA-EE-A2MF-06 1 158592936 158592936 G A SPTA1 Missense_Mutation p.P1986L 0.39 tolerated(0.27) benign(0.03) TCGA-EE-A2MF-06 1 159277647 159277647 C T FCER1A Silent p.L233L 0.32 TCGA-EE-A2MF-06 1 159505762 159505762 G A OR10J5 Silent p.F12F 0.37 TCGA-EE-A2MF-06 1 159683778 159683778 G A CRP Missense_Mutation p.S71L 0.43 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MF-06 1 160160769 160160769 G A CASQ1 Silent p.E76E 0.46 TCGA-EE-A2MF-06 1 160389128 160389128 C T VANGL2 Missense_Mutation p.R177C 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 1 161928361 161928361 C T ATF6 Nonsense_Mutation p.Q644* 0.41 TCGA-EE-A2MF-06 1 161969922 161969922 C T OLFML2B Silent p.E310E 0.38 TCGA-EE-A2MF-06 1 16255687 16255687 G A SPEN Silent p.R984R 0.43 TCGA-EE-A2MF-06 1 164761879 164761879 G A PBX1 Silent p.G138G 0.39 TCGA-EE-A2MF-06 1 168160618 168160618 A C TIPRL Silent p.T132T 0.43 TCGA-EE-A2MF-06 1 171244613 171244613 T A FMO1 Silent p.L150L 0.42 TCGA-EE-A2MF-06 1 171293297 171293297 G A FMO4 Silent p.T114T 0.42 TCGA-EE-A2MF-06 1 175049375 175049375 G A TNN Silent p.Q287Q 0.32 TCGA-EE-A2MF-06 1 176564602 176564602 G A PAPPA2 Nonsense_Mutation p.W621* 0.36 TCGA-EE-A2MF-06 1 176564612 176564612 G A PAPPA2 Silent p.R624R 0.36 TCGA-EE-A2MF-06 1 17721601 17721601 A C PADI6 Intron 0.38 TCGA-EE-A2MF-06 1 179077360 179077360 G A ABL2 Silent p.S1014S 0.44 TCGA-EE-A2MF-06 1 179564869 179564869 G A TDRD5 Silent p.P249P 0.40 TCGA-EE-A2MF-06 1 181690986 181690986 C T CACNA1E Silent p.F683F 0.36 TCGA-EE-A2MF-06 1 182569515 182569515 G A RGS16 Missense_Mutation p.S174L 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 1 182845607 182845607 C T DHX9 Silent p.P685P 0.28 TCGA-EE-A2MF-06 1 185109117 185109117 G A TRMT1L Missense_Mutation p.S366F 0.31 tolerated(0.33) benign(0.103) TCGA-EE-A2MF-06 1 18809473 18809473 G A KLHDC7A Silent p.K666K 0.33 TCGA-EE-A2MF-06 1 19501449 19501449 A G UBR4 Missense_Mutation p.V951A 0.40 benign(0) TCGA-EE-A2MF-06 1 196642283 196642283 G A CFH Silent p.R78R 0.58 TCGA-EE-A2MF-06 1 196759172 196759172 C T CFHR3 Intron 0.51 TCGA-EE-A2MF-06 1 197098447 197098447 C A ASPM Missense_Mutation p.G877V 0.56 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MF-06 1 197446994 197446994 G A CRB1 Missense_Mutation p.M1402I 0.20 tolerated(0.14) benign(0.001) TCGA-EE-A2MF-06 1 200880679 200880679 T C C1orf106 Missense_Mutation p.F353S 0.59 deleterious(0.04) probably_damaging(0.972) TCGA-EE-A2MF-06 1 201331115 201331115 C T TNNT2 Silent p.R205R 0.47 TCGA-EE-A2MF-06 1 204913473 204913473 C T NFASC Silent p.V10V 0.70 TCGA-EE-A2MF-06 1 206225374 206225374 G A AVPR1B Missense_Mutation p.D312N 0.34 tolerated(0.78) benign(0.014) TCGA-EE-A2MF-06 1 206904533 206904533 C T MAPKAPK2 Missense_Mutation p.P273L 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MF-06 1 207812784 207812784 G A CR1 3'Flank 0.52 TCGA-EE-A2MF-06 1 210334237 210334237 T A SYT14 Nonsense_Mutation p.Y570* 0.28 TCGA-EE-A2MF-06 1 211280701 211280701 C T KCNH1 Missense_Mutation p.G33E 0.49 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MF-06 1 214171380 214171380 C T PROX1 Missense_Mutation p.S501F 0.63 tolerated(0.23) benign(0.003) TCGA-EE-A2MF-06 1 214625207 214625207 A C PTPN14 Silent p.L95L 0.66 TCGA-EE-A2MF-06 1 219385019 219385019 G A LYPLAL1 Silent p.L221L 0.35 TCGA-EE-A2MF-06 1 220089189 220089189 G A SLC30A10 Missense_Mutation p.P354S 0.61 deleterious(0.05) benign(0.001) TCGA-EE-A2MF-06 1 220804420 220804420 A C MARK1 Missense_Mutation p.E318A 0.33 deleterious(0.02) benign(0.002) TCGA-EE-A2MF-06 1 226108077 226108077 G A PYCR2 3'UTR 0.59 TCGA-EE-A2MF-06 1 227288840 227288857 TCATAAAAGATACTTTTC - CDC42BPA In_Frame_Del p.K696_E701del 0.20 TCGA-EE-A2MF-06 1 228479832 228479832 G A OBSCN Missense_Mutation p.E3954K 0.54 benign(0.321) TCGA-EE-A2MF-06 1 22852823 22852823 C T ZBTB40 Silent p.L1218L 0.39 TCGA-EE-A2MF-06 1 229568468 229568468 G A ACTA1 Missense_Mutation p.R97C 0.32 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-EE-A2MF-06 1 23191529 23191529 G C EPHB2 Missense_Mutation p.G376A 0.43 tolerated(0.09) benign(0.139) TCGA-EE-A2MF-06 1 234367230 234367230 C A SLC35F3 Silent p.G117G 0.35 TCGA-EE-A2MF-06 1 236157083 236157083 G A NID1 Silent p.L873L 0.55 TCGA-EE-A2MF-06 1 242271106 242271106 T C PLD5 Missense_Mutation p.E369G 0.34 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A2MF-06 1 24447847 24447847 G A IL22RA1 Silent p.A391A 0.36 TCGA-EE-A2MF-06 1 245849093 245849093 C T KIF26B Silent p.I936I 0.48 TCGA-EE-A2MF-06 1 247978607 247978607 C T OR14A16 Missense_Mutation p.R142K 0.59 deleterious(0) benign(0.009) TCGA-EE-A2MF-06 1 248084811 248084811 C T OR2T8 Silent p.F164F 0.26 TCGA-EE-A2MF-06 1 248652000 248652000 G A OR2T5 Silent p.V37V 0.29 TCGA-EE-A2MF-06 1 248737597 248737597 C T OR2T34 Nonsense_Mutation p.W154* 0.51 TCGA-EE-A2MF-06 1 248790085 248790085 C T OR2T11 Missense_Mutation p.M115I 0.27 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MF-06 1 26526455 26526455 G A CATSPER4 Missense_Mutation p.G298D 0.47 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A2MF-06 1 33562347 33562347 C T ADC Missense_Mutation p.P265S 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MF-06 1 34182069 34182069 C T CSMD2 Missense_Mutation p.E972K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 1 34209054 34209054 G A CSMD2 Missense_Mutation p.P627L 0.39 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MF-06 1 47365968 47365968 G A CYP4Z2P RNA 0.41 TCGA-EE-A2MF-06 1 57351711 57351711 G A C8A Missense_Mutation p.D323N 0.36 deleterious(0.03) possibly_damaging(0.776) TCGA-EE-A2MF-06 1 60456313 60456313 G A C1orf87 3'UTR 0.36 TCGA-EE-A2MF-06 1 6046307 6046307 G A NPHP4 Missense_Mutation p.P15S 0.36 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MF-06 1 66102394 66102394 G A LEPR Missense_Mutation p.G1065E 0.35 tolerated(0.8) benign(0.008) TCGA-EE-A2MF-06 1 78408167 78408167 G A NEXN Missense_Mutation p.E561K 0.25 deleterious(0.01) benign(0.154) TCGA-EE-A2MF-06 1 78958681 78958681 G A PTGFR Missense_Mutation p.G85R 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 1 87045039 87045039 G A CLCA4 Missense_Mutation p.E709K 0.44 tolerated(1) benign(0.003) TCGA-EE-A2MF-06 1 87104641 87104641 G A RP4-651E10.4 Intron 0.40 TCGA-EE-A2MF-06 1 92979374 92979374 G A EVI5 Missense_Mutation p.P758S 0.42 tolerated_low_confidence(0.4) benign(0.002) TCGA-EE-A2MF-06 1 9633421 9633421 T C SLC25A33 Silent p.L145L 0.54 TCGA-EE-A2MF-06 20 12989926 12989926 C T SPTLC3 Missense_Mutation p.P4L 0.40 tolerated_low_confidence(0.34) benign(0.002) TCGA-EE-A2MF-06 20 1592227 1592227 C T SIRPB1 Intron 0.66 TCGA-EE-A2MF-06 20 19662553 19662553 G A SLC24A3 Silent p.G273G 0.39 TCGA-EE-A2MF-06 20 23016354 23016354 G A SSTR4 Missense_Mutation p.M78I 0.39 tolerated(0.05) probably_damaging(0.998) TCGA-EE-A2MF-06 20 23064935 23064935 G A CD93 Missense_Mutation p.P632L 0.44 deleterious(0.05) benign(0.209) TCGA-EE-A2MF-06 20 23548955 23548955 G A CST9L Missense_Mutation p.R45C 0.49 tolerated(0.11) possibly_damaging(0.535) TCGA-EE-A2MF-06 20 25197351 25197351 C T ENTPD6 Silent p.I259I 0.35 TCGA-EE-A2MF-06 20 29978305 29978305 G A DEFB119 5'Flank 0.37 TCGA-EE-A2MF-06 20 30689321 30689321 G A HCK Silent p.%3D 0.50 TCGA-EE-A2MF-06 20 35749341 35749341 C T MROH8 Missense_Mutation p.G719E 0.39 tolerated(0.29) benign(0.081) TCGA-EE-A2MF-06 20 41514563 41514563 G A PTPRT Missense_Mutation p.S33F 0.33 deleterious(0) possibly_damaging(0.701) TCGA-EE-A2MF-06 20 42788384 42788384 T G JPH2 Missense_Mutation p.K348T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MF-06 20 43851361 43851361 A C SEMG2 Missense_Mutation p.K363T 0.48 deleterious(0.01) possibly_damaging(0.652) TCGA-EE-A2MF-06 20 44691164 44691164 G A NCOA5 Silent p.S505S 0.41 TCGA-EE-A2MF-06 20 44839107 44839107 G A CDH22 Silent p.F375F 0.48 TCGA-EE-A2MF-06 20 45132920 45132920 C T ZNF334 Silent p.V58V 0.38 TCGA-EE-A2MF-06 20 48156209 48156209 C T PTGIS Missense_Mutation p.E191K 0.42 tolerated(0.92) benign(0.003) TCGA-EE-A2MF-06 20 48500526 48500526 C T SLC9A8 Missense_Mutation p.R488C 0.47 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MF-06 20 51872077 51872077 C T TSHZ2 Missense_Mutation p.P694S 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MF-06 20 56073659 56073659 C T CTCFL Missense_Mutation p.E647K 0.42 tolerated(0.23) benign(0.013) TCGA-EE-A2MF-06 20 58570951 58570951 T A CDH26 Missense_Mutation p.F577Y 0.42 tolerated(0.82) benign(0.385) TCGA-EE-A2MF-06 20 58645091 58645091 G A C20orf197 Missense_Mutation p.R21K 0.43 deleterious_low_confidence(0) benign(0.14) TCGA-EE-A2MF-06 20 9560890 9560890 G A PAK7 Missense_Mutation p.P298S 0.40 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-EE-A2MF-06 21 10862762 10862762 C T IGHV1OR21-1 Nonsense_Mutation p.Q20* 0.05 TCGA-EE-A2MF-06 21 10906814 10906814 G A TPTE 3'UTR 0.16 TCGA-EE-A2MF-06 21 10951282 10951282 G A TPTE Nonsense_Mutation p.R144* 0.26 TCGA-EE-A2MF-06 21 11029680 11029680 G A BAGE2 RNA 0.23 TCGA-EE-A2MF-06 21 11039070 11039070 C T BAGE2 RNA 0.03 TCGA-EE-A2MF-06 21 19629125 19629125 T C CHODL Missense_Mutation p.S127P 0.36 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MF-06 21 30961275 30961275 C T GRIK1 Missense_Mutation p.E485K 0.38 tolerated(0.07) possibly_damaging(0.843) TCGA-EE-A2MF-06 21 32502582 32502582 G A TIAM1 Nonsense_Mutation p.R1332* 0.40 TCGA-EE-A2MF-06 21 34131546 34131546 G A PAXBP1 Nonsense_Mutation p.R410* 0.40 TCGA-EE-A2MF-06 21 36081023 36081023 C T CLIC6 Missense_Mutation p.P546S 0.43 deleterious(0.02) possibly_damaging(0.709) TCGA-EE-A2MF-06 21 39671339 39671339 A G KCNJ15 Silent p.Q52Q 0.06 TCGA-EE-A2MF-06 21 39795450 39795450 G A ERG Silent p.G97G 0.45 TCGA-EE-A2MF-06 21 40551856 40551856 C T PSMG1 Silent p.L150L 0.38 TCGA-EE-A2MF-06 21 43796763 43796763 C T TMPRSS3 Missense_Mutation p.A361T 0.37 tolerated(0.59) possibly_damaging(0.733) TCGA-EE-A2MF-06 21 45548195 45548195 C T PWP2 Silent p.S809S 0.41 TCGA-EE-A2MF-06 21 45844749 45844749 C T TRPM2 Silent p.A1188A 0.31 TCGA-EE-A2MF-06 21 47776895 47776895 C T PCNT Missense_Mutation p.P648L 0.45 possibly_damaging(0.908) TCGA-EE-A2MF-06 22 22453527 22453527 C T IGLV8-61 Silent p.S91S 0.89 TCGA-EE-A2MF-06 22 22599238 22599238 C T VPREB1 Missense_Mutation p.P5S 0.85 tolerated(0.07) benign(0.178) TCGA-EE-A2MF-06 22 23654022 23654022 C T BCR Silent p.V1107V 0.90 TCGA-EE-A2MF-06 22 26164502 26164502 G A MYO18B Missense_Mutation p.E207K 1.00 tolerated_low_confidence(0.21) benign(0.014) TCGA-EE-A2MF-06 22 26422418 26422418 G A MYO18B Missense_Mutation p.E2160K 0.88 tolerated(0.61) benign(0.006) TCGA-EE-A2MF-06 22 36722679 36722679 C T MYH9 Silent p.E182E 0.86 TCGA-EE-A2MF-06 22 38074623 38074624 - A LGALS1 Frame_Shift_Ins p.A76Gfs*49 0.86 TCGA-EE-A2MF-06 22 38536042 38536042 G A PLA2G6 Silent p.I248I 0.73 TCGA-EE-A2MF-06 22 39262668 39262668 G A CBX6 Missense_Mutation p.A262V 0.92 tolerated(0.32) benign(0.005) TCGA-EE-A2MF-06 22 45959038 45959038 C T FBLN1 Intron 0.89 TCGA-EE-A2MF-06 2 102632434 102632434 C T IL1R2 Missense_Mutation p.S145L 0.44 tolerated(0.1) possibly_damaging(0.833) TCGA-EE-A2MF-06 2 103040339 103040339 G A IL18RAP Missense_Mutation p.D47N 0.46 tolerated(0.48) benign(0.086) TCGA-EE-A2MF-06 2 103121867 103121867 C T SLC9A4 Missense_Mutation p.H379Y 0.40 deleterious(0) possibly_damaging(0.811) TCGA-EE-A2MF-06 2 10729252 10729252 G A NOL10 Silent p.V587V 0.39 TCGA-EE-A2MF-06 2 108921046 108921046 G A SULT1C2 Missense_Mutation p.R142Q 0.37 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MF-06 2 108998302 108998302 G A SULT1C4 Missense_Mutation p.R85Q 0.39 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MF-06 2 109087301 109087301 G T GCC2 Nonsense_Mutation p.E506* 0.43 TCGA-EE-A2MF-06 2 109087302 109087302 A T GCC2 Missense_Mutation p.E506V 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MF-06 2 113067660 113067660 G A ZC3H6 Missense_Mutation p.E179K 0.44 deleterious(0) possibly_damaging(0.524) TCGA-EE-A2MF-06 2 119732117 119732117 C T MARCO Missense_Mutation p.P197S 0.35 tolerated(0.08) probably_damaging(0.992) TCGA-EE-A2MF-06 2 119750786 119750786 T G MARCO Missense_Mutation p.C447G 0.38 deleterious(0) benign(0.126) TCGA-EE-A2MF-06 2 133014567 133014567 G A MIR663B RNA 0.17 TCGA-EE-A2MF-06 2 133175311 133175311 C T GPR39 Silent p.L232L 0.47 TCGA-EE-A2MF-06 2 141986896 141986896 G A LRP1B Missense_Mutation p.H236Y 0.39 benign(0.152) TCGA-EE-A2MF-06 2 152370931 152370931 C T NEB Silent p.R7676R 0.42 TCGA-EE-A2MF-06 2 161143509 161143509 G C RBMS1 Missense_Mutation p.P243A 0.42 tolerated(1) benign(0.002) TCGA-EE-A2MF-06 2 163291946 163291946 C T KCNH7 Silent p.A572A 0.37 TCGA-EE-A2MF-06 2 166535621 166535621 G A CSRNP3 Silent p.E372E 0.46 TCGA-EE-A2MF-06 2 166892933 166892933 C T SCN1A Silent p.R1018R 0.46 TCGA-EE-A2MF-06 2 166894560 166894560 C T SCN1A Missense_Mutation p.G891E 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MF-06 2 168101647 168101647 G A XIRP2 Missense_Mutation p.D1249N 0.44 probably_damaging(0.991) TCGA-EE-A2MF-06 2 168107590 168107590 C T XIRP2 Missense_Mutation p.R3230C 0.52 benign(0.024) TCGA-EE-A2MF-06 2 170077059 170077059 G C LRP2 Missense_Mutation p.H1851Q 0.38 benign(0.003) TCGA-EE-A2MF-06 2 170470977 170470977 A T PPIG Silent p.T127T 0.38 TCGA-EE-A2MF-06 2 179360349 179360349 C T PLEKHA3 Missense_Mutation p.P193S 0.41 tolerated(0.2) benign(0.013) TCGA-EE-A2MF-06 2 179433974 179433974 C T TTN Missense_Mutation p.G25629R 0.37 TCGA-EE-A2MF-06 2 179440691 179440691 T C TTN Missense_Mutation p.N23390D 0.39 TCGA-EE-A2MF-06 2 179446457 179446457 G C TTN Missense_Mutation p.P22180A 0.43 TCGA-EE-A2MF-06 2 179498297 179498297 G A TTN Silent p.F14263F 0.35 TCGA-EE-A2MF-06 2 179613357 179613357 G A TTN Intron 0.34 TCGA-EE-A2MF-06 2 179635288 179635288 C T TTN Missense_Mutation p.G2744E 0.42 TCGA-EE-A2MF-06 2 180634386 180634386 A T ZNF385B Missense_Mutation p.F33I 0.50 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A2MF-06 2 183621060 183621060 T G DNAJC10 Missense_Mutation p.V558G 0.34 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 2 189927626 189927626 C T COL5A2 Missense_Mutation p.G648S 0.45 probably_damaging(1) TCGA-EE-A2MF-06 2 1907023 1907023 A - MYT1L Frame_Shift_Del p.Y619Tfs*41 0.35 TCGA-EE-A2MF-06 2 197172734 197172734 C T HECW2 Missense_Mutation p.R837Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MF-06 2 197172778 197172778 C T HECW2 Silent p.R822R 0.44 TCGA-EE-A2MF-06 2 197784778 197784778 G A PGAP1 Missense_Mutation p.P82S 0.39 tolerated(0.13) benign(0.216) TCGA-EE-A2MF-06 2 202153327 202153327 C G ALS2CR12 3'UTR 0.40 TCGA-EE-A2MF-06 2 203142701 203142701 C T NOP58 Nonsense_Mutation p.Q51* 0.34 TCGA-EE-A2MF-06 2 203620295 203620295 T G FAM117B Missense_Mutation p.I332S 0.38 tolerated(0.17) benign(0.248) TCGA-EE-A2MF-06 2 209302574 209302574 C T PTH2R Missense_Mutation p.R127C 0.32 deleterious(0.02) probably_damaging(0.912) TCGA-EE-A2MF-06 2 213914511 213914511 G A IKZF2 Missense_Mutation p.P167L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 2 218712502 218712502 G A TNS1 Missense_Mutation p.P788L 0.38 tolerated(0.41) benign(0.04) TCGA-EE-A2MF-06 2 219000374 219000374 G A CXCR2 Missense_Mutation p.E284K 0.46 deleterious(0.01) benign(0.191) TCGA-EE-A2MF-06 2 220494117 220494117 C T SLC4A3 Missense_Mutation p.H157Y 0.50 deleterious_low_confidence(0.01) benign(0.001) TCGA-EE-A2MF-06 2 222428631 222428631 G A EPHA4 Missense_Mutation p.P215S 0.40 tolerated(0.1) probably_damaging(0.968) TCGA-EE-A2MF-06 2 224462739 224462739 C T SCG2 Missense_Mutation p.R421H 0.49 tolerated(0.56) benign(0.002) TCGA-EE-A2MF-06 2 224462785 224462785 G A SCG2 Nonsense_Mutation p.Q406* 0.43 TCGA-EE-A2MF-06 2 227661055 227661055 A C IRS1 Nonsense_Mutation p.Y800* 0.42 TCGA-EE-A2MF-06 2 228155475 228155475 A G COL4A3 Missense_Mutation p.K1028R 0.51 unknown(0) TCGA-EE-A2MF-06 2 228563527 228563527 G A SLC19A3 Silent p.L302L 0.40 TCGA-EE-A2MF-06 2 228563864 228563864 G A SLC19A3 Silent p.F189F 0.38 TCGA-EE-A2MF-06 2 231157430 231157430 G A SP140 Missense_Mutation p.G632E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 2 234106796 234106796 G A INPP5D Missense_Mutation p.G905R 0.47 tolerated(0.05) benign(0.386) TCGA-EE-A2MF-06 2 237300953 237300953 C T IQCA1 Silent p.Q417Q 0.27 TCGA-EE-A2MF-06 2 31178565 31178565 C T GALNT14 Silent p.Q196Q 0.38 TCGA-EE-A2MF-06 2 31483602 31483602 C T EHD3 Silent p.I243I 0.47 TCGA-EE-A2MF-06 2 37111138 37111138 C A STRN Missense_Mutation p.G375C 0.50 tolerated(0.19) benign(0.401) TCGA-EE-A2MF-06 2 40366629 40366629 T G SLC8A1 Silent p.G819G 0.39 TCGA-EE-A2MF-06 2 40366799 40366799 C T SLC8A1 Missense_Mutation p.D763N 0.42 tolerated(0.1) benign(0.167) TCGA-EE-A2MF-06 2 42508004 42508004 A G EML4 Missense_Mutation p.K228E 0.47 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 2 47221588 47221588 G A TTC7A Missense_Mutation p.M312I 0.43 tolerated(0.17) benign(0.004) TCGA-EE-A2MF-06 2 55786039 55786039 A T SMEK2 Missense_Mutation p.F776I 0.44 tolerated(0.4) benign(0.206) TCGA-EE-A2MF-06 2 61238962 61238962 G A PUS10 Missense_Mutation p.P22S 0.37 tolerated(0.14) benign(0.094) TCGA-EE-A2MF-06 2 69093103 69093103 G A BMP10 Missense_Mutation p.A312V 0.44 tolerated(0.05) benign(0.24) TCGA-EE-A2MF-06 2 73450573 73450573 C T SMYD5 Missense_Mutation p.H266Y 0.42 tolerated(0.07) probably_damaging(0.984) TCGA-EE-A2MF-06 2 73518830 73518830 C T EGR4 Missense_Mutation p.G509S 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 2 74143732 74143732 A C ACTG2 Missense_Mutation p.H276P 0.48 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-EE-A2MF-06 2 74328695 74328695 G A TET3 Missense_Mutation p.G1459R 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2MF-06 2 74699804 74699804 G A MRPL53 5'UTR 0.47 TCGA-EE-A2MF-06 2 79350013 79350013 C T REG1A Missense_Mutation p.S123F 0.38 tolerated(0.08) probably_damaging(0.99) TCGA-EE-A2MF-06 2 85570354 85570354 C T RETSAT 3'UTR 0.23 TCGA-EE-A2MF-06 2 86831436 86831436 C T RNF103 Missense_Mutation p.E530K 0.41 tolerated(0.54) benign(0.002) TCGA-EE-A2MF-06 2 88125213 88125213 G A RGPD2 Silent p.L12L 0.33 TCGA-EE-A2MF-06 2 89196826 89196826 C T IGKV5-2 Missense_Mutation p.H6Y 0.39 tolerated(0.15) benign(0.01) TCGA-EE-A2MF-06 2 89399415 89399415 G A IGKV1-16 Silent p.T96T 0.29 TCGA-EE-A2MF-06 2 89513052 89513052 C T IGKV1-27 Silent p.L69L 0.26 TCGA-EE-A2MF-06 2 90078234 90078234 G A IGKV3D-20 Missense_Mutation p.D91N 0.24 deleterious(0.01) possibly_damaging(0.767) TCGA-EE-A2MF-06 2 90153768 90153768 C T IGKV3D-15 Silent p.L8L 0.22 TCGA-EE-A2MF-06 2 96781075 96781075 G A ADRA2B Missense_Mutation p.P272S 0.35 tolerated(0.25) benign(0.021) TCGA-EE-A2MF-06 3 100352147 100352147 C T GPR128 Silent p.L125L 0.51 TCGA-EE-A2MF-06 3 101476917 101476917 A T CEP97 Silent p.I489I 0.38 TCGA-EE-A2MF-06 3 108110643 108110643 C T MYH15 Missense_Mutation p.M1818I 0.34 tolerated(0.05) benign(0.003) TCGA-EE-A2MF-06 3 108112888 108112888 G A MYH15 Missense_Mutation p.A1770V 0.36 deleterious(0.02) benign(0.032) TCGA-EE-A2MF-06 3 108188969 108188969 C T MYH15 Missense_Mutation p.E512K 0.38 deleterious(0.02) benign(0.204) TCGA-EE-A2MF-06 3 112358682 112358682 T G CCDC80 Missense_Mutation p.H24P 0.31 tolerated_low_confidence(0.27) benign(0) TCGA-EE-A2MF-06 3 113286421 113286421 C T SIDT1 Missense_Mutation p.R127C 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MF-06 3 113346507 113346507 G A SIDT1 Silent p.L812L 0.36 TCGA-EE-A2MF-06 3 120673835 120673835 C T STXBP5L Missense_Mutation p.P80S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 3 121341214 121341214 A C FBXO40 Missense_Mutation p.H313P 0.31 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MF-06 3 121980842 121980842 C T CASR Silent p.F320F 0.40 TCGA-EE-A2MF-06 3 122418363 122418363 C T PARP14 Missense_Mutation p.P321L 0.38 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2MF-06 3 126207067 126207067 G A UROC1 Silent p.A648A 0.36 TCGA-EE-A2MF-06 3 126736492 126736492 C T PLXNA1 Silent p.S1167S 0.44 TCGA-EE-A2MF-06 3 128706573 128706573 G A KIAA1257 Missense_Mutation p.H185Y 0.38 deleterious(0.04) possibly_damaging(0.684) TCGA-EE-A2MF-06 3 129267943 129267943 C T H1FOO Missense_Mutation p.P160S 0.29 tolerated(0.1) possibly_damaging(0.863) TCGA-EE-A2MF-06 3 132349375 132349375 G A ACAD11 Missense_Mutation p.S290L 0.42 tolerated(0.07) benign(0.019) TCGA-EE-A2MF-06 3 13679062 13679062 G A FBLN2 Silent p.T1113T 0.64 TCGA-EE-A2MF-06 3 141526604 141526604 C T GRK7 Missense_Mutation p.P390S 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 3 154146664 154146664 T G GPR149 Missense_Mutation p.R247S 0.44 tolerated(0.74) benign(0.009) TCGA-EE-A2MF-06 3 157031522 157031522 G A VEPH1 Missense_Mutation p.S633F 0.38 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MF-06 3 167167187 167167187 G A SERPINI2 Missense_Mutation p.S323L 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MF-06 3 169540187 169540187 G A LRRIQ4 Missense_Mutation p.E160K 0.44 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A2MF-06 3 169656114 169656114 G A SAMD7 Silent p.Q387Q 0.35 TCGA-EE-A2MF-06 3 172232732 172232732 A C TNFSF10 Missense_Mutation p.S63R 0.41 tolerated(0.54) benign(0.003) TCGA-EE-A2MF-06 3 172353768 172353768 C T NCEH1 Missense_Mutation p.G223S 0.44 tolerated(0.65) benign(0.01) TCGA-EE-A2MF-06 3 172835398 172835398 C T SPATA16 Missense_Mutation p.E42K 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-EE-A2MF-06 3 184059834 184059834 C T FAM131A Intron 0.38 TCGA-EE-A2MF-06 3 184090587 184090587 C T THPO Missense_Mutation p.G259E 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MF-06 3 184090588 184090588 C T THPO Missense_Mutation p.G259R 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MF-06 3 184299160 184299160 T G EPHB3 Missense_Mutation p.F951C 0.48 deleterious(0.04) probably_damaging(0.976) TCGA-EE-A2MF-06 3 192516621 192516621 G A MB21D2 Missense_Mutation p.P344S 0.44 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2MF-06 3 193028435 193028435 C T ATP13A5 Silent p.Q839Q 0.48 TCGA-EE-A2MF-06 3 197639610 197639610 A G IQCG Missense_Mutation p.M300T 0.40 tolerated(0.61) benign(0.017) TCGA-EE-A2MF-06 3 38592310 38592310 C T SCN5A Missense_Mutation p.M1851I 0.81 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A2MF-06 3 407684 407684 A C CHL1 Missense_Mutation p.H546P 0.80 tolerated(0.31) possibly_damaging(0.713) TCGA-EE-A2MF-06 3 45714242 45714242 G A LIMD1 Missense_Mutation p.E568K 0.76 tolerated(0.09) benign(0.137) TCGA-EE-A2MF-06 3 46449977 46449977 G A CCRL2 Missense_Mutation p.G148E 0.77 tolerated(1) benign(0.012) TCGA-EE-A2MF-06 3 49569010 49569010 C T DAG1 Missense_Mutation p.P356S 0.84 tolerated(0.23) probably_damaging(0.956) TCGA-EE-A2MF-06 3 51743392 51743392 T G GRM2 Missense_Mutation p.D131E 0.69 tolerated(0.91) benign(0.06) TCGA-EE-A2MF-06 3 52521917 52521917 C T NISCH Silent p.F803F 0.84 TCGA-EE-A2MF-06 3 5257670 5257670 C T EDEM1 3'UTR 0.92 TCGA-EE-A2MF-06 3 52643768 52643768 G A PBRM1 Nonsense_Mutation p.R710* 0.72 TCGA-EE-A2MF-06 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.74 TCGA-EE-A2MF-06 3 54905569 54905569 G A CACNA2D3 Missense_Mutation p.E544K 0.70 tolerated(1) benign(0.269) TCGA-EE-A2MF-06 3 62751604 62751604 C T CADPS Missense_Mutation p.G166E 0.75 deleterious(0) probably_damaging(0.931) TCGA-EE-A2MF-06 3 63542372 63542372 T A SYNPR Silent p.I121I 0.77 TCGA-EE-A2MF-06 3 66431077 66431077 C T LRIG1 Silent p.G993G 0.38 TCGA-EE-A2MF-06 3 66431078 66431078 C T LRIG1 Missense_Mutation p.G993E 0.38 tolerated(0.39) benign(0.013) TCGA-EE-A2MF-06 3 77666801 77666801 C T ROBO2 Missense_Mutation p.S1160F 0.40 deleterious(0.02) possibly_damaging(0.485) TCGA-EE-A2MF-06 3 77684109 77684109 G A ROBO2 Silent p.Q1299Q 0.47 TCGA-EE-A2MF-06 3 9594070 9594070 G A LHFPL4 Silent p.F98F 0.88 TCGA-EE-A2MF-06 3 97329700 97329700 T G EPHA6 Splice_Site p.X858_splice 0.40 TCGA-EE-A2MF-06 3 97711708 97711708 C T GABRR3 3'Flank 0.35 TCGA-EE-A2MF-06 3 99513943 99513943 C T COL8A1 Missense_Mutation p.P400S 0.53 tolerated(0.89) unknown(0) TCGA-EE-A2MF-06 4 10447782 10447782 A G ZNF518B Silent p.I57I 0.41 TCGA-EE-A2MF-06 4 104511147 104511147 G A TACR3 Nonsense_Mutation p.R364* 0.21 TCGA-EE-A2MF-06 4 110790880 110790880 T C LRIT3 Silent p.D325D 0.47 TCGA-EE-A2MF-06 4 110884433 110884433 G A EGF Missense_Mutation p.E473K 0.42 tolerated(1) benign(0) TCGA-EE-A2MF-06 4 111397501 111397501 G A ENPEP 5'UTR 0.52 TCGA-EE-A2MF-06 4 113435766 113435766 G A NEUROG2 3'UTR 0.39 TCGA-EE-A2MF-06 4 119035981 119035981 G A NDST3 Missense_Mutation p.G364R 0.33 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A2MF-06 4 123184124 123184124 C A KIAA1109 Missense_Mutation p.S2323Y 0.39 probably_damaging(0.959) TCGA-EE-A2MF-06 4 128726942 128726942 G A HSPA4L Missense_Mutation p.G413E 0.47 tolerated(0.29) benign(0.206) TCGA-EE-A2MF-06 4 13604735 13604735 T C BOD1L1 Silent p.E1263E 0.34 TCGA-EE-A2MF-06 4 138451472 138451472 G A PCDH18 Missense_Mutation p.P591S 0.37 tolerated(0.31) benign(0.129) TCGA-EE-A2MF-06 4 140810971 140810971 G A MAML3 Missense_Mutation p.P540L 0.37 probably_damaging(0.999) TCGA-EE-A2MF-06 4 148406836 148406836 G A EDNRA Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EE-A2MF-06 4 148860973 148860973 T A ARHGAP10 Intron 0.71 TCGA-EE-A2MF-06 4 158041767 158041767 A G GLRB Missense_Mutation p.N61S 0.37 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MF-06 4 159572931 159572931 G A RXFP1 Silent p.V666V 0.46 TCGA-EE-A2MF-06 4 166795172 166795172 G A TLL1 Missense_Mutation p.G39E 0.41 tolerated_low_confidence(0.28) benign(0.001) TCGA-EE-A2MF-06 4 166996032 166996032 A G TLL1 Missense_Mutation p.K731E 0.50 tolerated(0.19) benign(0.273) TCGA-EE-A2MF-06 4 1670532 1670532 C T FAM53A 5'UTR 0.61 TCGA-EE-A2MF-06 4 167656143 167656143 C T SPOCK3 Missense_Mutation p.E414K 0.34 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A2MF-06 4 183600827 183600827 C T TENM3 Silent p.F445F 0.40 TCGA-EE-A2MF-06 4 183658198 183658198 C T TENM3 Nonsense_Mutation p.Q1069* 0.38 TCGA-EE-A2MF-06 4 187524108 187524108 C T FAT1 Missense_Mutation p.E3811K 0.41 benign(0.005) TCGA-EE-A2MF-06 4 3208638 3208638 C T HTT Silent p.F2001F 0.37 TCGA-EE-A2MF-06 4 36069774 36069774 G A ARAP2 Nonsense_Mutation p.R1624* 0.40 TCGA-EE-A2MF-06 4 36230727 36230727 C T ARAP2 Missense_Mutation p.E128K 0.42 tolerated_low_confidence(0.79) benign(0.002) TCGA-EE-A2MF-06 4 46060276 46060276 A T GABRG1 Missense_Mutation p.F292I 0.43 deleterious(0) possibly_damaging(0.64) TCGA-EE-A2MF-06 4 47667088 47667088 T G CORIN Missense_Mutation p.K517T 0.41 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MF-06 4 52928427 52928427 G A SPATA18 Silent p.R117R 0.36 TCGA-EE-A2MF-06 4 5630351 5630351 G A EVC2 Silent p.T607T 0.37 TCGA-EE-A2MF-06 4 57182009 57182009 G A KIAA1211 Missense_Mutation p.E781K 0.41 deleterious(0.04) possibly_damaging(0.486) TCGA-EE-A2MF-06 4 69416513 69416513 C T UGT2B17 Missense_Mutation p.D399N 0.21 deleterious(0.02) benign(0.446) TCGA-EE-A2MF-06 4 69519873 69519873 C T UGT2B15 Missense_Mutation p.D399N 0.18 deleterious(0.02) benign(0.254) TCGA-EE-A2MF-06 4 69796437 69796437 C T UGT2A3 Silent p.G377G 0.49 TCGA-EE-A2MF-06 4 70146416 70146416 C T UGT2B28 Silent p.P66P 0.44 TCGA-EE-A2MF-06 4 76730143 76730143 C T USO1 Missense_Mutation p.S814F 0.43 deleterious(0.01) possibly_damaging(0.664) TCGA-EE-A2MF-06 4 76902587 76902587 G A SDAD1 Missense_Mutation p.P78S 0.33 tolerated(0.11) probably_damaging(0.934) TCGA-EE-A2MF-06 4 7774673 7774673 C T AFAP1 Silent p.K709K 0.32 TCGA-EE-A2MF-06 4 81196149 81196149 G A FGF5 Missense_Mutation p.G148R 0.32 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MF-06 4 81196150 81196150 G A FGF5 Missense_Mutation p.G148E 0.33 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MF-06 4 81207634 81207634 G A FGF5 Silent p.R205R 0.44 TCGA-EE-A2MF-06 4 88533290 88533290 G A DSPP Missense_Mutation p.E29K 0.39 possibly_damaging(0.65) TCGA-EE-A2MF-06 4 94376999 94376999 C T GRID2 Missense_Mutation p.L578F 0.44 tolerated(0.19) possibly_damaging(0.522) TCGA-EE-A2MF-06 5 10282332 10282332 C T CMBL Missense_Mutation p.D179N 0.45 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A2MF-06 5 10973718 10973718 C T CTNND2 Silent p.Q1175Q 0.44 TCGA-EE-A2MF-06 5 112769966 112769966 G A TSSK1B Missense_Mutation p.P191S 0.45 deleterious(0.03) possibly_damaging(0.897) TCGA-EE-A2MF-06 5 113698856 113698856 C T KCNN2 Silent p.F128F 0.51 TCGA-EE-A2MF-06 5 11732266 11732266 G A CTNND2 Silent p.L52L 0.45 TCGA-EE-A2MF-06 5 122343405 122343405 C T SNX24 Silent p.V157V 0.40 TCGA-EE-A2MF-06 5 127664331 127664331 G A FBN2 Intron 0.46 TCGA-EE-A2MF-06 5 132425303 132425303 C T HSPA4 Missense_Mutation p.L432F 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 5 13901387 13901387 G A DNAH5 Missense_Mutation p.L676F 0.43 possibly_damaging(0.849) TCGA-EE-A2MF-06 5 140307350 140307350 G A PCDHAC1 Silent p.G291G 0.48 TCGA-EE-A2MF-06 5 140348541 140348541 G A PCDHAC2 Silent p.K730K 0.45 TCGA-EE-A2MF-06 5 140515278 140515278 G A PCDHB5 Missense_Mutation p.E88K 0.31 deleterious_low_confidence(0.03) benign(0.345) TCGA-EE-A2MF-06 5 140553440 140553440 G A PCDHB7 Missense_Mutation p.D342N 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.482) TCGA-EE-A2MF-06 5 140719158 140719158 T C PCDHGA2 Missense_Mutation p.V207A 0.47 tolerated_low_confidence(0.37) benign(0.139) TCGA-EE-A2MF-06 5 140772810 140772810 G A PCDHGA8 Missense_Mutation p.E144K 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MF-06 5 140793859 140793859 T A PCDHGA10 Missense_Mutation p.L373I 0.49 tolerated_low_confidence(0.42) benign(0.217) TCGA-EE-A2MF-06 5 140857391 140857391 C T PCDHGC3 Missense_Mutation p.P570S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 5 145427372 145427372 A C SH3RF2 Missense_Mutation p.H366P 0.40 tolerated(0.16) benign(0.003) TCGA-EE-A2MF-06 5 148407696 148407696 G A SH3TC2 Silent p.L533L 0.36 TCGA-EE-A2MF-06 5 150072517 150072517 G A RBM22 Missense_Mutation p.P358S 0.32 tolerated(0.13) benign(0.001) TCGA-EE-A2MF-06 5 150714950 150714950 G A SLC36A2 Silent p.S228S 0.42 TCGA-EE-A2MF-06 5 154395113 154395113 A C KIF4B Missense_Mutation p.E565A 0.49 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MF-06 5 159781843 159781843 C T C1QTNF2 Missense_Mutation p.R104Q 0.55 tolerated(0.13) unknown(0) TCGA-EE-A2MF-06 5 169661144 169661144 G A C5orf58 Missense_Mutation p.R2K 0.44 tolerated_low_confidence(0.06) benign(0.003) TCGA-EE-A2MF-06 5 179546356 179546356 C T RASGEF1C Missense_Mutation p.M299I 0.43 deleterious(0.02) benign(0.25) TCGA-EE-A2MF-06 5 179555479 179555479 G A RASGEF1C Silent p.I190I 0.41 TCGA-EE-A2MF-06 5 180486781 180486781 G A BTNL9 Silent p.G509G 0.51 TCGA-EE-A2MF-06 5 180665212 180665212 T C GNB2L1 Missense_Mutation p.N222D 0.49 tolerated(0.08) benign(0.07) TCGA-EE-A2MF-06 5 32074117 32074117 G A PDZD2 Missense_Mutation p.D969N 0.35 deleterious(0) possibly_damaging(0.856) TCGA-EE-A2MF-06 5 33684053 33684053 C T ADAMTS12 Missense_Mutation p.V248M 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 5 36608580 36608580 C T SLC1A3 Nonsense_Mutation p.Q19* 0.42 TCGA-EE-A2MF-06 5 39342193 39342193 C A C9 Missense_Mutation p.M61I 0.44 deleterious(0.03) possibly_damaging(0.648) TCGA-EE-A2MF-06 5 40852530 40852530 G A CARD6 Missense_Mutation p.E366K 0.38 tolerated(0.06) possibly_damaging(0.552) TCGA-EE-A2MF-06 5 54566472 54566472 A G DHX29 Missense_Mutation p.L976S 0.43 tolerated(0.15) possibly_damaging(0.56) TCGA-EE-A2MF-06 5 55407169 55407169 C T ANKRD55 Missense_Mutation p.R469Q 0.45 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A2MF-06 5 60060118 60060118 G A ELOVL7 Silent p.F145F 0.37 TCGA-EE-A2MF-06 5 66459117 66459117 C T MAST4 Silent p.S1370S 0.46 TCGA-EE-A2MF-06 5 66479530 66479530 C T CD180 Missense_Mutation p.D381N 0.40 tolerated(0.52) benign(0.005) TCGA-EE-A2MF-06 5 6656243 6656243 C T SRD5A1 Silent p.I171I 0.41 TCGA-EE-A2MF-06 5 79855816 79855816 G A ANKRD34B Missense_Mutation p.S8L 0.27 tolerated(0.55) benign(0.164) TCGA-EE-A2MF-06 5 85592194 85592194 C T NBPF22P RNA 0.32 TCGA-EE-A2MF-06 6 102307302 102307302 G A GRIK2 Silent p.G486G 0.66 TCGA-EE-A2MF-06 6 107003646 107003646 G A AIM1 Nonsense_Mutation p.W1455* 0.70 TCGA-EE-A2MF-06 6 119245226 119245226 A G MCM9 Missense_Mutation p.L124S 0.78 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MF-06 6 130762210 130762210 G A TMEM200A Missense_Mutation p.G215S 0.71 tolerated(0.28) benign(0.01) TCGA-EE-A2MF-06 6 132873848 132873848 C T TAAR8 Missense_Mutation p.S6F 0.88 deleterious(0) benign(0.02) TCGA-EE-A2MF-06 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.83 tolerated(0.18) benign(0.001) TCGA-EE-A2MF-06 6 144263789 144263789 G A PLAGL1 Missense_Mutation p.T55I 0.83 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MF-06 6 146256182 146256182 T C SHPRH Missense_Mutation p.K951E 0.71 deleterious(0) probably_damaging(0.963) TCGA-EE-A2MF-06 6 146256482 146256482 G A SHPRH Missense_Mutation p.P889S 0.80 tolerated(0.31) benign(0.05) TCGA-EE-A2MF-06 6 152804264 152804264 C T SYNE1 Missense_Mutation p.E436K 0.75 possibly_damaging(0.74) TCGA-EE-A2MF-06 6 15523073 15523073 T C DTNBP1 3'UTR 0.32 TCGA-EE-A2MF-06 6 28963443 28963443 G A ZNF311 Missense_Mutation p.P446S 0.29 tolerated(0.78) benign(0.009) TCGA-EE-A2MF-06 6 30122264 30122264 C T TRIM10 Splice_Site p.X310_splice 0.26 TCGA-EE-A2MF-06 6 30866003 30866003 C T DDR1 Silent p.N796N 0.27 TCGA-EE-A2MF-06 6 3137609 3137609 T A BPHL Silent p.V182V 0.31 TCGA-EE-A2MF-06 6 31595823 31595823 C T PRRC2A Silent p.V524V 0.14 TCGA-EE-A2MF-06 6 32008968 32008968 G A CYP21A2 3'UTR 0.24 TCGA-EE-A2MF-06 6 32159098 32159098 A G GPSM3 3'UTR 0.27 TCGA-EE-A2MF-06 6 32917646 32917646 A G HLA-DMA Missense_Mutation p.F132L 0.29 deleterious(0) possibly_damaging(0.712) TCGA-EE-A2MF-06 6 33139583 33139583 T C COL11A2 Silent p.E933E 0.23 TCGA-EE-A2MF-06 6 33151926 33151926 C T COL11A2 Intron 0.26 TCGA-EE-A2MF-06 6 33169894 33169894 C T SLC39A7 Missense_Mutation p.S209F 0.28 deleterious(0.01) possibly_damaging(0.463) TCGA-EE-A2MF-06 6 33232210 33232210 G C VPS52 Missense_Mutation p.Q489E 0.30 tolerated(0.27) benign(0.028) TCGA-EE-A2MF-06 6 35199555 35199555 A C SCUBE3 Missense_Mutation p.M130L 0.26 tolerated(0.06) benign(0.017) TCGA-EE-A2MF-06 6 36168369 36168369 C T BRPF3 Silent p.S90S 0.28 TCGA-EE-A2MF-06 6 36172574 36172574 C T BRPF3 Nonsense_Mutation p.Q530* 0.26 TCGA-EE-A2MF-06 6 36455071 36455071 C T KCTD20 3'UTR 0.31 TCGA-EE-A2MF-06 6 36465554 36465554 T A STK38 Intron 0.26 TCGA-EE-A2MF-06 6 36652072 36652072 G A CDKN1A Nonsense_Mutation p.W65* 0.28 TCGA-EE-A2MF-06 6 38830211 38830211 G A DNAH8 Missense_Mutation p.R1879K 0.28 probably_damaging(0.999) TCGA-EE-A2MF-06 6 41712504 41712504 C T PGC Silent p.K34K 0.26 TCGA-EE-A2MF-06 6 46826630 46826630 G A GPR116 Missense_Mutation p.P1004S 0.24 tolerated(0.23) benign(0.02) TCGA-EE-A2MF-06 6 47251946 47251946 G A TNFRSF21 Missense_Mutation p.S324F 0.26 deleterious(0.01) possibly_damaging(0.615) TCGA-EE-A2MF-06 6 50016259 50016259 T A DEFB112 Missense_Mutation p.I36F 0.30 tolerated(0.71) benign(0) TCGA-EE-A2MF-06 6 52129397 52129397 A G MCM3 Missense_Mutation p.F851L 0.30 tolerated(0.06) possibly_damaging(0.493) TCGA-EE-A2MF-06 6 52657657 52657657 C T GSTA1 Silent p.L181L 0.29 TCGA-EE-A2MF-06 6 54806560 54806560 C T FAM83B Missense_Mutation p.R931W 0.24 deleterious(0) possibly_damaging(0.847) TCGA-EE-A2MF-06 6 55216326 55216326 C T GFRAL Missense_Mutation p.P216S 0.23 deleterious(0.02) benign(0.126) TCGA-EE-A2MF-06 6 55266654 55266654 C T GFRAL 3'UTR 0.31 TCGA-EE-A2MF-06 6 55625271 55625271 C T BMP5 Missense_Mutation p.R363Q 0.30 tolerated(0.73) benign(0.094) TCGA-EE-A2MF-06 6 55739279 55739279 A G BMP5 Silent p.L129L 0.30 TCGA-EE-A2MF-06 6 56325024 56325024 C T DST Missense_Mutation p.R5053Q 0.21 probably_damaging(0.999) TCGA-EE-A2MF-06 6 70964873 70964873 G A COL9A1 Missense_Mutation p.P531S 0.39 probably_damaging(0.995) TCGA-EE-A2MF-06 6 75799851 75799851 C T COL12A1 Silent p.G2972G 0.37 TCGA-EE-A2MF-06 6 7585756 7585756 G A DSP Missense_Mutation p.G2754E 0.32 probably_damaging(0.969) TCGA-EE-A2MF-06 6 84233954 84233954 G A PRSS35 Missense_Mutation p.R265Q 0.82 tolerated(0.23) benign(0.295) TCGA-EE-A2MF-06 6 88140778 88140778 G A C6ORF165 Missense_Mutation p.R396K 0.69 tolerated(1) benign(0.004) TCGA-EE-A2MF-06 7 100187673 100187673 C T FBXO24 Missense_Mutation p.S76F 0.44 deleterious_low_confidence(0) benign(0.262) TCGA-EE-A2MF-06 7 100350389 100350389 C T ZAN Silent p.I887I 0.69 TCGA-EE-A2MF-06 7 106523592 106523592 C T PIK3CG Missense_Mutation p.S915F 0.73 tolerated(0.06) benign(0.018) TCGA-EE-A2MF-06 7 117305614 117305614 T A CFTR Missense_Mutation p.F1413Y 0.73 deleterious(0.04) benign(0.001) TCGA-EE-A2MF-06 7 121653046 121653046 G T PTPRZ1 Missense_Mutation p.V1316F 0.04 tolerated_low_confidence(0.21) benign(0.299) TCGA-EE-A2MF-06 7 121678851 121678851 C G PTPRZ1 Missense_Mutation p.L1804V 0.82 deleterious(0.02) benign(0.114) TCGA-EE-A2MF-06 7 121944267 121944267 G A FEZF1 Silent p.I75I 0.79 TCGA-EE-A2MF-06 7 12675748 12675748 A T SCIN Silent p.G466G 0.36 TCGA-EE-A2MF-06 7 131195655 131195655 G A PODXL Missense_Mutation p.S213L 0.46 tolerated(0.11) benign(0.145) TCGA-EE-A2MF-06 7 131866308 131866308 C G PLXNA4 Missense_Mutation p.Q1108H 0.53 tolerated(0.25) benign(0.004) TCGA-EE-A2MF-06 7 134896295 134896295 G A WDR91 5'Flank 0.44 TCGA-EE-A2MF-06 7 139820289 139820289 A C KDM7A Silent p.A364A 0.36 TCGA-EE-A2MF-06 7 141629994 141629994 G A CLEC5A Silent p.F159F 0.43 TCGA-EE-A2MF-06 7 141631620 141631620 G A CLEC5A Missense_Mutation p.L118F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 7 141635679 141635679 C T CLEC5A Missense_Mutation p.E94K 0.38 tolerated(1) benign(0.003) TCGA-EE-A2MF-06 7 142111599 142111599 G A TRBV5-7 Missense_Mutation p.S46F 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MF-06 7 142250914 142250914 C T TRBV6-4 Missense_Mutation p.D45N 0.35 tolerated(0.38) benign(0.046) TCGA-EE-A2MF-06 7 142651298 142651298 G A KEL Silent p.F299F 0.50 TCGA-EE-A2MF-06 7 143039157 143039157 T G CLCN1 Missense_Mutation p.L573R 0.39 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2MF-06 7 144077078 144077078 C T ARHGEF5 Missense_Mutation p.R1575C 0.39 tolerated(0.06) benign(0.052) TCGA-EE-A2MF-06 7 148287966 148287966 G A C7orf33 5'UTR 0.62 TCGA-EE-A2MF-06 7 148802030 148802030 G A ZNF425 Silent p.F311F 0.36 TCGA-EE-A2MF-06 7 149191301 149191301 G A ZNF746 Silent p.S106S 0.34 TCGA-EE-A2MF-06 7 154561270 154561270 C T DPP6 Missense_Mutation p.H343Y 0.33 tolerated(0.06) probably_damaging(0.972) TCGA-EE-A2MF-06 7 157691385 157691385 G A PTPRN2 Missense_Mutation p.L590F 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MF-06 7 18067089 18067089 G A PRPS1L1 Missense_Mutation p.P106L 0.36 deleterious(0.03) possibly_damaging(0.842) TCGA-EE-A2MF-06 7 22852734 22852734 A C TOMM7 3'UTR 0.40 TCGA-EE-A2MF-06 7 31611742 31611742 C T CCDC129 Missense_Mutation p.P138L 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 7 37311465 37311465 C T ELMO1 Missense_Mutation p.G72D 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 7 37780653 37780653 G A GPR141 Missense_Mutation p.E220K 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MF-06 7 39243877 39243877 C T POU6F2 Silent p.D78D 0.34 TCGA-EE-A2MF-06 7 39243878 39243878 C T POU6F2 Nonsense_Mutation p.Q79* 0.34 TCGA-EE-A2MF-06 7 44091429 44091429 A G DBNL Missense_Mutation p.E47G 0.51 tolerated(0.18) benign(0.009) TCGA-EE-A2MF-06 7 45744164 45744164 C T ADCY1 Silent p.I922I 0.39 TCGA-EE-A2MF-06 7 49977200 49977200 G A ZPBP Missense_Mutation p.S327L 0.38 deleterious(0) possibly_damaging(0.696) TCGA-EE-A2MF-06 7 53104211 53104211 T G POM121L12 Missense_Mutation p.F283V 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.765) TCGA-EE-A2MF-06 7 55211055 55211055 C T EGFR Missense_Mutation p.P100S 0.44 deleterious(0.01) probably_damaging(0.92) TCGA-EE-A2MF-06 7 55211104 55211104 C T EGFR Missense_Mutation p.S116F 0.44 tolerated(0.06) benign(0.004) TCGA-EE-A2MF-06 7 71130487 71130487 G A WBSCR17 Missense_Mutation p.G391D 0.48 tolerated(0.74) benign(0.001) TCGA-EE-A2MF-06 7 74004223 74004223 G A GTF2IRD1 Silent p.R820R 0.36 TCGA-EE-A2MF-06 7 76111877 76111877 C T DTX2 Silent p.G107G 0.50 TCGA-EE-A2MF-06 7 8126136 8126136 C T GLCCI1 Missense_Mutation p.H538Y 0.42 deleterious_low_confidence(0.05) benign(0.271) TCGA-EE-A2MF-06 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.31 unknown(0) TCGA-EE-A2MF-06 7 82585807 82585807 G A PCLO Missense_Mutation p.P1488S 0.37 unknown(0) TCGA-EE-A2MF-06 7 92732610 92732610 G A SAMD9 Missense_Mutation p.S934L 0.37 deleterious(0.04) benign(0.332) TCGA-EE-A2MF-06 7 92734352 92734352 C T SAMD9 Silent p.T353T 0.37 TCGA-EE-A2MF-06 7 92734676 92734676 C T SAMD9 Silent p.G245G 0.33 TCGA-EE-A2MF-06 7 92761137 92761137 G A SAMD9L Missense_Mutation p.S1383F 0.39 tolerated(1) benign(0) TCGA-EE-A2MF-06 7 99312215 99312215 T G CYP3A7 Missense_Mutation p.K254T 0.45 tolerated(0.16) benign(0.008) TCGA-EE-A2MF-06 8 101153891 101153891 A G FBXO43 Silent p.F197F 0.64 TCGA-EE-A2MF-06 8 105367305 105367305 C G DCSTAMP Silent p.P410P 0.45 TCGA-EE-A2MF-06 8 105367306 105367306 A G DCSTAMP Missense_Mutation p.S411G 0.45 tolerated(0.16) benign(0.01) TCGA-EE-A2MF-06 8 110477210 110477210 G A PKHD1L1 Missense_Mutation p.G2717R 0.24 deleterious(0) benign(0.05) TCGA-EE-A2MF-06 8 113563001 113563001 G A CSMD3 Missense_Mutation p.S1488F 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MF-06 8 134125787 134125787 C T TG Missense_Mutation p.S2565F 0.55 deleterious(0) possibly_damaging(0.826) TCGA-EE-A2MF-06 8 140630564 140630564 G A KCNK9 Silent p.I354I 0.58 TCGA-EE-A2MF-06 8 142517231 142517231 C T MROH5 Missense_Mutation p.E7K 0.42 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MF-06 8 144332667 144332667 C T ZFP41 3'UTR 0.62 TCGA-EE-A2MF-06 8 145268066 145268066 T G MROH1 Intron 0.55 TCGA-EE-A2MF-06 8 17417917 17417917 C T SLC7A2 Missense_Mutation p.S500L 0.79 tolerated(0.18) benign(0.005) TCGA-EE-A2MF-06 8 19192312 19192312 G A SH2D4A Missense_Mutation p.E153K 0.78 tolerated(0.36) benign(0.005) TCGA-EE-A2MF-06 8 22020245 22020245 G A SFTPC Missense_Mutation p.M67I 0.77 deleterious(0.05) possibly_damaging(0.487) TCGA-EE-A2MF-06 8 23702222 23702222 G T STC1 3'UTR 0.92 TCGA-EE-A2MF-06 8 23708982 23708982 G A STC1 Silent p.F108F 0.81 TCGA-EE-A2MF-06 8 25766040 25766040 G A EBF2 Nonsense_Mutation p.Q195* 0.76 TCGA-EE-A2MF-06 8 2876092 2876092 A T CSMD1 Missense_Mutation p.F2646I 0.80 probably_damaging(0.995) TCGA-EE-A2MF-06 8 30702970 30702970 T A TEX15 Missense_Mutation p.E1188D 0.65 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A2MF-06 8 32611948 32611948 C T NRG1 Silent p.L258L 0.75 TCGA-EE-A2MF-06 8 39502882 39502882 G A ADAM18 Missense_Mutation p.G312E 0.74 deleterious(0.04) possibly_damaging(0.811) TCGA-EE-A2MF-06 8 41530090 41530090 C T ANK1 Silent p.V1667V 0.81 TCGA-EE-A2MF-06 8 48794651 48794651 G A PRKDC Missense_Mutation p.A1594V 0.67 benign(0.013) TCGA-EE-A2MF-06 8 53045673 53045673 C T ST18 Silent p.R796R 0.28 TCGA-EE-A2MF-06 8 53045802 53045802 C T ST18 Missense_Mutation p.R787K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 8 55372621 55372621 G A SOX17 3'UTR 0.27 TCGA-EE-A2MF-06 8 68419072 68419072 G A CPA6 Missense_Mutation p.H196Y 0.64 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A2MF-06 8 69030803 69030803 G A PREX2 Silent p.R1115R 0.26 TCGA-EE-A2MF-06 8 69033155 69033155 G A PREX2 Splice_Site p.X1199_splice 0.35 TCGA-EE-A2MF-06 8 71593242 71593242 C T XKR9 5'UTR 0.59 TCGA-EE-A2MF-06 8 77764005 77764005 C T ZFHX4 Silent p.L1616L 0.56 TCGA-EE-A2MF-06 8 77764324 77764324 C T ZFHX4 Missense_Mutation p.P1723S 0.25 possibly_damaging(0.803) TCGA-EE-A2MF-06 8 79514139 79514139 A T PKIA 3'UTR 0.79 TCGA-EE-A2MF-06 8 86392938 86392938 G A CA2 Missense_Mutation p.E235K 0.55 deleterious(0) benign(0.09) TCGA-EE-A2MF-06 9 103213197 103213197 C T MSANTD3 Silent p.T259T 0.72 TCGA-EE-A2MF-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.77 TCGA-EE-A2MF-06 9 111640356 111640356 G A IKBKAP Silent p.A1258A 0.84 TCGA-EE-A2MF-06 9 113205965 113205965 G - SVEP1 Frame_Shift_Del p.T1500Kfs*6 0.36 TCGA-EE-A2MF-06 9 123742432 123742432 G A C5 Missense_Mutation p.S1196F 0.81 deleterious(0) possibly_damaging(0.866) TCGA-EE-A2MF-06 9 125273445 125273445 G A OR1J2 Missense_Mutation p.R122Q 0.76 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2MF-06 9 125330095 125330095 C T OR1L8 Missense_Mutation p.R221Q 0.65 tolerated(0.29) benign(0.076) TCGA-EE-A2MF-06 9 130478336 130478336 G A PTRH1 5'UTR 0.89 TCGA-EE-A2MF-06 9 132084184 132084184 C T C9orf106 RNA 0.73 TCGA-EE-A2MF-06 9 136344106 136344106 C T SLC2A6 Missense_Mutation p.D26N 0.94 tolerated(0.28) benign(0.103) TCGA-EE-A2MF-06 9 140108750 140108750 C T NDOR1 Missense_Mutation p.P203S 0.83 tolerated(0.06) benign(0.328) TCGA-EE-A2MF-06 9 339064 339064 C T DOCK8 Missense_Mutation p.S494L 0.66 deleterious(0) benign(0.133) TCGA-EE-A2MF-06 9 35044893 35044893 G A C9orf131 Missense_Mutation p.G756E 0.67 tolerated(0.29) possibly_damaging(0.727) TCGA-EE-A2MF-06 9 35044894 35044894 G A C9orf131 Silent p.G756G 0.67 TCGA-EE-A2MF-06 9 35107559 35107559 C T FAM214B Missense_Mutation p.C238Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MF-06 9 78808172 78808172 G A PCSK5 Intron 0.71 TCGA-EE-A2MF-06 9 8465627 8465627 C T PTPRD Missense_Mutation p.E1185K 0.73 deleterious(0.01) benign(0.257) TCGA-EE-A2MF-06 9 86357478 86357478 T C GKAP1 Silent p.E314E 0.83 TCGA-EE-A2MF-06 X 100349963 100349963 G A TMEM35 3'UTR 0.43 TCGA-EE-A2MF-06 X 100402952 100402952 C T CENPI Silent p.F632F 0.35 TCGA-EE-A2MF-06 X 100547999 100547999 G A TAF7L Missense_Mutation p.S12L 0.43 tolerated(0.94) benign(0.011) TCGA-EE-A2MF-06 X 103219191 103219191 G A TMSB15B Silent p.K32K 0.11 TCGA-EE-A2MF-06 X 105449808 105449808 C T MUM1L1 Missense_Mutation p.S128L 0.42 tolerated(0.06) benign(0.022) TCGA-EE-A2MF-06 X 107084267 107084267 G A MID2 Silent p.R124R 0.33 TCGA-EE-A2MF-06 X 107084268 107084268 A C MID2 Missense_Mutation p.T125P 0.33 tolerated_low_confidence(0.44) benign(0.001) TCGA-EE-A2MF-06 X 107335041 107335041 G C ATG4A 5'UTR 0.32 TCGA-EE-A2MF-06 X 107418389 107418389 T A COL4A6 Missense_Mutation p.N964Y 0.45 probably_damaging(0.945) TCGA-EE-A2MF-06 X 107811990 107811990 G A COL4A5 Missense_Mutation p.G108E 0.36 unknown(0) TCGA-EE-A2MF-06 X 111019427 111019427 C T TRPC5 3'UTR 0.42 TCGA-EE-A2MF-06 X 117815030 117815030 C T DOCK11 Missense_Mutation p.S1894L 0.32 tolerated(0.19) benign(0.01) TCGA-EE-A2MF-06 X 118227657 118227657 C T KIAA1210 Missense_Mutation p.E486K 0.38 tolerated(0.1) benign(0.001) TCGA-EE-A2MF-06 X 118892684 118892684 G A SOWAHD Silent p.P18P 0.29 TCGA-EE-A2MF-06 X 118923891 118923891 C T RPL39 Missense_Mutation p.M29I 0.33 tolerated(0.05) benign(0.024) TCGA-EE-A2MF-06 X 123515034 123515034 C T TENM1 Silent p.G2517G 0.41 TCGA-EE-A2MF-06 X 128641929 128641929 C T SMARCA1 Missense_Mutation p.E319K 0.36 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MF-06 X 128922436 128922436 C T SASH3 Silent p.T61T 0.45 TCGA-EE-A2MF-06 X 129370283 129370283 A G ZNF280C Missense_Mutation p.S226P 0.43 tolerated(0.09) probably_damaging(0.953) TCGA-EE-A2MF-06 X 129506927 129506927 A G SLC25A14 3'UTR 0.39 TCGA-EE-A2MF-06 X 129629232 129629232 T A RP1-274L7.1 Intron 0.39 TCGA-EE-A2MF-06 X 130415299 130415299 C T IGSF1 Nonsense_Mutation p.W513* 0.44 TCGA-EE-A2MF-06 X 132440114 132440114 C T GPC4 Missense_Mutation p.D316N 0.41 tolerated(0.25) benign(0.22) TCGA-EE-A2MF-06 X 135405474 135405474 G A GPR112 Missense_Mutation p.G203E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 X 13607758 13607758 G A EGFL6 Nonsense_Mutation p.W53* 0.48 TCGA-EE-A2MF-06 X 136649781 136649781 G A ZIC3 Missense_Mutation p.A311T 0.37 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2MF-06 X 136649896 136649896 A G ZIC3 Missense_Mutation p.K349R 0.44 deleterious(0.01) benign(0.16) TCGA-EE-A2MF-06 X 140996488 140996488 C T MAGEC1 Missense_Mutation p.P1100S 0.42 tolerated(0.29) unknown(0) TCGA-EE-A2MF-06 X 148037355 148037355 G A AFF2 Missense_Mutation p.E594K 0.43 deleterious(0) benign(0.371) TCGA-EE-A2MF-06 X 150156315 150156315 G A HMGB3 Silent p.R177R 0.44 TCGA-EE-A2MF-06 X 150349588 150349588 C T GPR50 Silent p.S511S 0.53 TCGA-EE-A2MF-06 X 150912097 150912097 G A CNGA2 Missense_Mutation p.M374I 0.37 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A2MF-06 X 151283787 151283787 C T RP11-1007I13.4 RNA 0.39 TCGA-EE-A2MF-06 X 151935766 151935766 T G MAGEA3 Missense_Mutation p.E134A 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MF-06 X 152482823 152482823 G A MAGEA1 Missense_Mutation p.A63V 0.38 tolerated(0.12) benign(0.088) TCGA-EE-A2MF-06 X 153070217 153070217 C T PDZD4 Missense_Mutation p.E301K 0.48 deleterious(0.04) possibly_damaging(0.453) TCGA-EE-A2MF-06 X 153222123 153222123 G A HCFC1 Missense_Mutation p.S863F 0.40 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A2MF-06 X 153716408 153716408 G C SLC10A3 Missense_Mutation p.S291C 0.04 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MF-06 X 153735629 153735629 C T FAM3A Missense_Mutation p.E168K 0.35 tolerated(0.12) benign(0.182) TCGA-EE-A2MF-06 X 153944425 153944425 G A GAB3 Silent p.F84F 0.38 TCGA-EE-A2MF-06 X 154018294 154018294 C T MPP1 Missense_Mutation p.E139K 0.33 tolerated(0.14) possibly_damaging(0.73) TCGA-EE-A2MF-06 X 17744466 17744466 G A NHS Missense_Mutation p.S726N 0.39 deleterious(0.04) probably_damaging(0.966) TCGA-EE-A2MF-06 X 17819512 17819512 G A RAI2 Missense_Mutation p.P207S 0.43 tolerated(0.27) unknown(0) TCGA-EE-A2MF-06 X 19014270 19014270 C T GPR64 Missense_Mutation p.G872E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MF-06 X 20206023 20206023 C T RPS6KA3 Missense_Mutation p.E233K 0.41 deleterious(0) possibly_damaging(0.889) TCGA-EE-A2MF-06 X 22050990 22050990 C T PHEX 5'UTR 0.41 TCGA-EE-A2MF-06 X 2408599 2408599 G A ZBED1 Silent p.I54I 0.38 TCGA-EE-A2MF-06 X 2936599 2936599 C T ARSH Silent p.L263L 0.39 TCGA-EE-A2MF-06 X 3019250 3019250 G A ARSF Missense_Mutation p.G364R 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MF-06 X 30577472 30577472 C T CXorf21 3'UTR 0.47 TCGA-EE-A2MF-06 X 3235416 3235416 G A MXRA5 Silent p.F2102F 0.50 TCGA-EE-A2MF-06 X 3241488 3241488 G A MXRA5 Silent p.L746L 0.43 TCGA-EE-A2MF-06 X 37639319 37639319 A G CYBB 5'UTR 0.36 TCGA-EE-A2MF-06 X 40540121 40540121 A T MED14 Silent p.I833I 0.38 TCGA-EE-A2MF-06 X 41029487 41029487 C T USP9X Missense_Mutation p.S959L 0.45 tolerated(0.17) benign(0.032) TCGA-EE-A2MF-06 X 47426121 47426121 C T ARAF Missense_Mutation p.S214F 0.44 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2MF-06 X 48771524 48771524 G A PIM2 Nonsense_Mutation p.R274* 0.38 TCGA-EE-A2MF-06 X 48847551 48847551 G A GRIPAP1 Intron 0.39 TCGA-EE-A2MF-06 X 49099919 49099919 C T CCDC22 Silent p.L235L 0.50 TCGA-EE-A2MF-06 X 50054000 50054000 C T CCNB3 Missense_Mutation p.S944F 0.40 tolerated(0.22) possibly_damaging(0.677) TCGA-EE-A2MF-06 X 50146156 50146156 C T DGKK RNA 0.43 TCGA-EE-A2MF-06 X 50381252 50381252 C T SHROOM4 Missense_Mutation p.G109E 0.41 tolerated(0.18) benign(0.033) TCGA-EE-A2MF-06 X 51487844 51487844 G A GSPT2 Silent p.L374L 0.42 TCGA-EE-A2MF-06 X 53965558 53965558 G A PHF8 3'UTR 0.45 TCGA-EE-A2MF-06 X 54569418 54569418 C T GNL3L Missense_Mutation p.P113S 0.45 tolerated(0.55) probably_damaging(0.998) TCGA-EE-A2MF-06 X 54957761 54957761 G A TRO 3'UTR 0.42 TCGA-EE-A2MF-06 X 54984787 54984787 G A PFKFB1 Silent p.F156F 0.44 TCGA-EE-A2MF-06 X 57021158 57021158 G A SPIN3 Nonsense_Mutation p.Q75* 0.42 TCGA-EE-A2MF-06 X 63405960 63405960 G A AMER1 3'UTR 0.36 TCGA-EE-A2MF-06 X 65242602 65242602 C T VSIG4 Intron 0.45 TCGA-EE-A2MF-06 X 70514088 70514088 C T NONO Silent p.T120T 0.37 TCGA-EE-A2MF-06 X 70782757 70782757 G A OGT Missense_Mutation p.D680N 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MF-06 X 7177764 7177764 G A STS Missense_Mutation p.D258N 0.27 deleterious(0.02) possibly_damaging(0.52) TCGA-EE-A2MF-06 X 71895921 71895921 T G PHKA1 Missense_Mutation p.K206T 0.40 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MF-06 X 73811621 73811621 C T RLIM Missense_Mutation p.R510Q 0.51 tolerated(1) unknown(0) TCGA-EE-A2MF-06 X 73960001 73960001 C T KIAA2022 Missense_Mutation p.G1464E 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2MF-06 X 73962589 73962589 G A KIAA2022 Silent p.S601S 0.43 TCGA-EE-A2MF-06 X 73963783 73963783 C T KIAA2022 Silent p.Q203Q 0.44 TCGA-EE-A2MF-06 X 77298181 77298181 A C ATP7A Silent p.G1300G 0.38 TCGA-EE-A2MF-06 X 77912712 77912712 C T ZCCHC5 Silent p.G402G 0.39 TCGA-EE-A2MF-06 X 77912768 77912768 C T ZCCHC5 Missense_Mutation p.D384N 0.43 tolerated(0.22) benign(0.028) TCGA-EE-A2MF-06 X 84306435 84306435 T C APOOL Missense_Mutation p.V54A 0.43 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2MF-06 X 91090354 91090354 C T PCDH11X 5'UTR 0.42 TCGA-EE-A2MG-06 10 123298196 123298196 T A FGFR2 Missense_Mutation p.S220C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 10 127486659 127486659 G A UROS Silent p.I150I 0.17 TCGA-EE-A2MG-06 10 28225794 28225794 C T ARMC4 Missense_Mutation p.E705K 0.20 tolerated(0.05) possibly_damaging(0.824) TCGA-EE-A2MG-06 10 76729810 76729810 A G KAT6B Silent p.R293R 0.21 TCGA-EE-A2MG-06 10 86273338 86273338 C G CCSER2 3'UTR 0.08 TCGA-EE-A2MG-06 10 91144016 91144016 G A IFIT1B Missense_Mutation p.E316K 0.11 tolerated(0.13) benign(0.066) TCGA-EE-A2MG-06 11 122955359 122955359 C T CLMP Silent p.V83V 0.14 TCGA-EE-A2MG-06 11 124180450 124180450 G A OR8D1 Silent p.F71F 0.21 TCGA-EE-A2MG-06 11 124189545 124189545 G A OR8D2 Silent p.P183P 0.08 TCGA-EE-A2MG-06 11 128709668 128709668 C T KCNJ1 Silent p.G176G 0.10 TCGA-EE-A2MG-06 11 17450174 17450174 C T ABCC8 Missense_Mutation p.E621K 0.13 deleterious(0.03) benign(0) TCGA-EE-A2MG-06 11 18267566 18267566 C T SAA2 Missense_Mutation p.D41N 0.27 deleterious(0.05) probably_damaging(1) TCGA-EE-A2MG-06 11 18290771 18290771 G A SAA1 Missense_Mutation p.D41N 0.12 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MG-06 11 21581772 21581772 G A NELL1 Nonsense_Mutation p.W608* 0.09 TCGA-EE-A2MG-06 11 48346606 48346606 C T OR4C3 Silent p.F38F 0.08 TCGA-EE-A2MG-06 11 5363896 5363896 G A OR51B5 Missense_Mutation p.P287S 0.09 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A2MG-06 11 55063004 55063004 C T TRIM51HP RNA 0.18 TCGA-EE-A2MG-06 11 55927529 55927529 G A OR8K5 Nonsense_Mutation p.R89* 0.18 TCGA-EE-A2MG-06 11 587263 587263 C T PHRF1 Silent p.S73S 0.24 TCGA-EE-A2MG-06 11 59368790 59368790 C T OSBP Missense_Mutation p.E364K 0.14 deleterious(0.05) benign(0.077) TCGA-EE-A2MG-06 11 61094298 61094298 G A DDB1 Missense_Mutation p.P206L 0.12 deleterious(0) possibly_damaging(0.771) TCGA-EE-A2MG-06 11 64802341 64802341 C T SNX15 Silent p.I93I 0.14 TCGA-EE-A2MG-06 12 10774478 10774478 G A STYK1 Missense_Mutation p.T354I 0.15 tolerated(0.1) benign(0.015) TCGA-EE-A2MG-06 12 121471302 121471302 G A OASL Missense_Mutation p.P148L 0.16 tolerated(0.41) benign(0.02) TCGA-EE-A2MG-06 12 31944912 31944912 C T H3F3C Silent p.R63R 0.12 TCGA-EE-A2MG-06 12 58145436 58145436 T A CDK4 Missense_Mutation p.K22M 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MG-06 12 70954596 70954596 G A PTPRB Silent p.P1429P 0.14 TCGA-EE-A2MG-06 13 23911699 23911699 G A SACS Missense_Mutation p.P2106S 0.15 benign(0.012) TCGA-EE-A2MG-06 14 23886453 23886453 G A MYH7 Silent p.S1476S 0.20 TCGA-EE-A2MG-06 14 24652822 24652822 G A IPO4 Silent p.A679A 0.23 TCGA-EE-A2MG-06 14 24652823 24652823 G A IPO4 Missense_Mutation p.A679V 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MG-06 14 70245170 70245170 G A SLC10A1 Missense_Mutation p.P275S 0.18 tolerated(0.12) benign(0.081) TCGA-EE-A2MG-06 14 72205880 72205880 G A SIPA1L1 3'UTR 0.13 TCGA-EE-A2MG-06 14 86088234 86088234 C T FLRT2 Missense_Mutation p.R126W 0.10 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MG-06 14 91642291 91642291 C T C14orf159 Silent p.I207I 0.14 TCGA-EE-A2MG-06 14 95033313 95033313 G A SERPINA4 Nonsense_Mutation p.W219* 0.15 TCGA-EE-A2MG-06 15 35085458 35085458 C T ACTC1 Missense_Mutation p.G148S 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-EE-A2MG-06 15 40758203 40758203 C T BAHD1 Silent p.P739P 0.20 TCGA-EE-A2MG-06 15 56386014 56386014 G A RFX7 Silent p.S1304S 0.23 TCGA-EE-A2MG-06 15 57745952 57745952 A G CGNL1 Missense_Mutation p.E709G 0.19 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MG-06 15 59911588 59911588 G A GCNT3 Missense_Mutation p.G384E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 15 78466040 78466040 C T ACSBG1 Missense_Mutation p.E662K 0.17 deleterious(0.02) benign(0.194) TCGA-EE-A2MG-06 15 91795180 91795180 G C SV2B Missense_Mutation p.V195L 0.12 deleterious(0.01) possibly_damaging(0.642) TCGA-EE-A2MG-06 16 20559719 20559719 G A ACSM2B Missense_Mutation p.S324F 0.23 deleterious(0.02) possibly_damaging(0.806) TCGA-EE-A2MG-06 16 2159259 2159259 G A PKD1 Missense_Mutation p.A1970V 0.13 benign(0.41) TCGA-EE-A2MG-06 16 56602771 56602771 C T MT4 Missense_Mutation p.P39L 0.10 deleterious(0.05) possibly_damaging(0.908) TCGA-EE-A2MG-06 16 56899360 56899360 C T SLC12A3 Silent p.A71A 0.11 TCGA-EE-A2MG-06 16 67320969 67320969 C T PLEKHG4 Missense_Mutation p.R998C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 16 7382957 7382957 C T RBFOX1 5'UTR 0.12 TCGA-EE-A2MG-06 16 86612345 86612345 G A FOXL1 Missense_Mutation p.D6N 0.11 tolerated(1) benign(0.001) TCGA-EE-A2MG-06 17 16635973 16635973 A G CCDC144A Missense_Mutation p.N804S 0.33 tolerated(0.47) benign(0.016) TCGA-EE-A2MG-06 17 38318286 38318286 G A CASC3 Missense_Mutation p.G163D 0.22 tolerated(0.07) benign(0.029) TCGA-EE-A2MG-06 17 39535984 39535984 C T KRT34 Splice_Site p.X239_splice 0.25 TCGA-EE-A2MG-06 17 41891690 41891690 C T MPP3 Missense_Mutation p.R350K 0.18 tolerated(0.96) benign(0.014) TCGA-EE-A2MG-06 17 42882796 42882796 C T GJC1 Silent p.T130T 0.20 TCGA-EE-A2MG-06 17 48549854 48549854 C T ACSF2 Silent p.I463I 0.31 TCGA-EE-A2MG-06 17 53155458 53155458 A G STXBP4 Missense_Mutation p.K403R 0.25 tolerated(1) benign(0.003) TCGA-EE-A2MG-06 17 56233041 56233041 A C OR4D1 Missense_Mutation p.N176T 0.24 tolerated(0.29) probably_damaging(1) TCGA-EE-A2MG-06 17 62758556 62758556 G T hsa-mir-6080 RNA 0.11 TCGA-EE-A2MG-06 17 74868989 74868989 G A MGAT5B Missense_Mutation p.G53E 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MG-06 17 7579312 7579312 C T TP53 Silent p.T125T 0.20 TCGA-EE-A2MG-06 17 7811803 7811803 T G CHD3 Missense_Mutation p.Y1805D 0.19 possibly_damaging(0.788) TCGA-EE-A2MG-06 17 8638800 8638800 C T CCDC42 Missense_Mutation p.E208K 0.17 tolerated(0.1) probably_damaging(0.98) TCGA-EE-A2MG-06 18 22805795 22805795 C A ZNF521 Missense_Mutation p.C696F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 19 10097052 10097052 C T COL5A3 Missense_Mutation p.G764E 0.20 unknown(0) TCGA-EE-A2MG-06 19 10506832 10506832 C T CDC37 Silent p.L50L 0.15 TCGA-EE-A2MG-06 19 15839540 15839540 C T OR10H2 Silent p.I229I 0.21 TCGA-EE-A2MG-06 19 19906068 19906068 A G ZNF506 Missense_Mutation p.Y210H 0.33 deleterious(0) possibly_damaging(0.543) TCGA-EE-A2MG-06 19 41387548 41387548 C T CYP2A7 Missense_Mutation p.E97K 0.09 tolerated(0.05) probably_damaging(0.945) TCGA-EE-A2MG-06 19 425215 425215 G A SHC2 Silent p.G397G 0.34 TCGA-EE-A2MG-06 19 44635207 44635207 C T ZNF225 Missense_Mutation p.P147L 0.11 tolerated(0.17) benign(0.002) TCGA-EE-A2MG-06 19 45540674 45540674 C T RELB Missense_Mutation p.P456S 0.11 tolerated(0.07) benign(0.017) TCGA-EE-A2MG-06 19 46663934 46663934 A G IGFL2 Missense_Mutation p.N57S 0.10 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MG-06 19 51021673 51021673 G A LRRC4B Nonsense_Mutation p.Q433* 0.11 TCGA-EE-A2MG-06 19 51729088 51729088 C T CD33 Missense_Mutation p.P150S 0.08 tolerated(0.29) benign(0.063) TCGA-EE-A2MG-06 19 51883823 51883823 C T LIM2 Silent p.G174G 0.18 TCGA-EE-A2MG-06 19 53015138 53015138 C T ZNF578 Missense_Mutation p.R502C 0.11 tolerated(0.05) possibly_damaging(0.804) TCGA-EE-A2MG-06 19 54314397 54314397 G A NLRP12 Silent p.V172V 0.21 TCGA-EE-A2MG-06 19 55294377 55294377 A G KIR2DL1 Missense_Mutation p.N240S 0.36 tolerated(0.74) benign(0.004) TCGA-EE-A2MG-06 19 55718140 55718140 C T PTPRH Missense_Mutation p.G90E 0.12 benign(0.01) TCGA-EE-A2MG-06 19 56896026 56896026 G A ZNF582 Missense_Mutation p.P254S 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MG-06 19 873506 873506 C T MED16 Silent p.Q616Q 0.12 TCGA-EE-A2MG-06 19 8841819 8841819 G A OR2Z1 Silent p.L143L 0.12 TCGA-EE-A2MG-06 19 9085769 9085769 G A MUC16 Missense_Mutation p.H2016Y 0.10 unknown(0) TCGA-EE-A2MG-06 19 9524605 9524605 G A ZNF266 Silent p.S332S 0.19 TCGA-EE-A2MG-06 1 101704481 101704481 C T S1PR1 5'UTR 0.45 TCGA-EE-A2MG-06 1 10535015 10535015 C T PEX14 5'UTR 0.29 TCGA-EE-A2MG-06 1 109777939 109777939 C T SARS Silent p.L285L 0.13 TCGA-EE-A2MG-06 1 112043095 112043095 G A ADORA3 Intron 0.17 TCGA-EE-A2MG-06 1 114189223 114189223 C T MAGI3 Missense_Mutation p.S705F 0.20 tolerated(0.11) probably_damaging(0.993) TCGA-EE-A2MG-06 1 115144803 115144803 G A DENND2C Silent p.S560S 0.11 TCGA-EE-A2MG-06 1 11595556 11595556 C T PTCHD2 Missense_Mutation p.T1224I 0.12 deleterious(0.01) benign(0.364) TCGA-EE-A2MG-06 1 119427256 119427256 C T TBX15 3'UTR 0.19 TCGA-EE-A2MG-06 1 150444095 150444095 C T RPRD2 Missense_Mutation p.P891S 0.14 deleterious_low_confidence(0.02) benign(0.146) TCGA-EE-A2MG-06 1 150941453 150941453 A G CERS2 Silent p.D38D 0.09 TCGA-EE-A2MG-06 1 151338884 151338884 T C SELENBP1 Missense_Mutation p.E237G 0.13 tolerated(0.08) benign(0.102) TCGA-EE-A2MG-06 1 153312982 153312982 C T PGLYRP4 Silent p.A233A 0.17 TCGA-EE-A2MG-06 1 175937542 175937542 G A RFWD2 Intron 0.20 TCGA-EE-A2MG-06 1 192335244 192335244 C T RGS21 Missense_Mutation p.P150L 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MG-06 1 207196511 207196511 G A C1orf116 Missense_Mutation p.P200S 0.12 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MG-06 1 223395425 223395425 A G SUSD4 3'UTR 0.17 TCGA-EE-A2MG-06 1 22817048 22817048 C T ZBTB40 Missense_Mutation p.P203S 0.14 tolerated(0.31) benign(0.134) TCGA-EE-A2MG-06 1 243828126 243828126 G T AKT3 Missense_Mutation p.Q78K 0.09 deleterious(0.02) benign(0.297) TCGA-EE-A2MG-06 1 243828127 243828127 G A AKT3 Silent p.L77L 0.09 TCGA-EE-A2MG-06 1 248366886 248366886 G A OR2M3 Missense_Mutation p.E173K 0.17 tolerated(0.2) benign(0.12) TCGA-EE-A2MG-06 1 27120878 27120878 C T PIGV Missense_Mutation p.S118L 0.20 deleterious(0.01) benign(0.407) TCGA-EE-A2MG-06 1 28536526 28536526 G A DNAJC8 Missense_Mutation p.A119V 0.24 tolerated(0.05) benign(0.031) TCGA-EE-A2MG-06 1 45484180 45484180 C T ZSWIM5 Silent p.Q1168Q 0.15 TCGA-EE-A2MG-06 1 45486444 45486444 G A ZSWIM5 Silent p.L822L 0.17 TCGA-EE-A2MG-06 1 47655600 47655600 G A PDZK1IP1 Missense_Mutation p.S2L 0.08 tolerated_low_confidence(0.28) benign(0.003) TCGA-EE-A2MG-06 1 57397493 57397493 G A C8B Silent p.S537S 0.21 TCGA-EE-A2MG-06 1 6206302 6206302 C T CHD5 Nonsense_Mutation p.W591* 0.18 TCGA-EE-A2MG-06 1 62740493 62740493 C T KANK4 Missense_Mutation p.V95M 0.27 tolerated(0.05) benign(0.423) TCGA-EE-A2MG-06 1 65131799 65131799 T C CACHD1 Missense_Mutation p.V728A 0.11 tolerated(0.36) benign(0.07) TCGA-EE-A2MG-06 1 70700397 70700397 G C SRSF11 Missense_Mutation p.A156P 0.13 deleterious(0.04) unknown(0) TCGA-EE-A2MG-06 1 77806157 77806157 C T AK5 Silent p.D265D 0.13 TCGA-EE-A2MG-06 1 78383922 78383922 G A NEXN Silent p.R137R 0.13 TCGA-EE-A2MG-06 1 8073678 8073678 C T ERRFI1 Silent p.P327P 0.15 TCGA-EE-A2MG-06 1 8418396 8418396 C T RERE Missense_Mutation p.R1400H 0.16 unknown(0) TCGA-EE-A2MG-06 1 94953463 94953463 G A ABCD3 Missense_Mutation p.G361R 0.18 deleterious(0) probably_damaging(0.914) TCGA-EE-A2MG-06 1 94953464 94953464 G A ABCD3 Missense_Mutation p.G361E 0.18 deleterious(0) probably_damaging(0.938) TCGA-EE-A2MG-06 20 21687029 21687029 G T PAX1 Intron 0.12 TCGA-EE-A2MG-06 20 30667604 30667604 G A HCK Silent p.K152K 0.12 TCGA-EE-A2MG-06 20 34800280 34800280 C T EPB41L1 Silent p.S722S 0.22 TCGA-EE-A2MG-06 20 61528003 61528003 G A DIDO1 Missense_Mutation p.S645F 0.17 possibly_damaging(0.877) TCGA-EE-A2MG-06 20 62326851 62326851 G A RTEL1 Intron 0.29 TCGA-EE-A2MG-06 21 10906928 10906928 C T TPTE Missense_Mutation p.D545N 0.10 tolerated_low_confidence(0.77) benign(0) TCGA-EE-A2MG-06 21 42720634 42720634 G A FAM3B Missense_Mutation p.E201K 0.17 tolerated(0.14) benign(0.209) TCGA-EE-A2MG-06 22 30416562 30416562 C T MTMR3 Missense_Mutation p.R972C 0.18 tolerated_low_confidence(0.08) benign(0.002) TCGA-EE-A2MG-06 22 37876777 37876777 C T MFNG Missense_Mutation p.G96S 0.17 tolerated(0.54) benign(0.038) TCGA-EE-A2MG-06 22 50584155 50584155 G A MOV10L1 Missense_Mutation p.G848E 0.12 deleterious(0.01) benign(0.396) TCGA-EE-A2MG-06 22 51182622 51182622 C T ACR Silent p.I233I 0.11 TCGA-EE-A2MG-06 2 113127724 113127724 G A RGPD8 3'UTR 0.15 TCGA-EE-A2MG-06 2 113942615 113942615 G A PSD4 Missense_Mutation p.D380N 0.15 tolerated_low_confidence(0.17) benign(0.003) TCGA-EE-A2MG-06 2 135744054 135744054 C T MAP3K19 Missense_Mutation p.M796I 0.17 tolerated(0.24) benign(0) TCGA-EE-A2MG-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.20 benign(0.002) TCGA-EE-A2MG-06 2 170031841 170031841 C T LRP2 Missense_Mutation p.E3544K 0.23 probably_damaging(1) TCGA-EE-A2MG-06 2 173898662 173898662 G A RAPGEF4 Silent p.K890K 0.16 TCGA-EE-A2MG-06 2 179427423 179427423 G A TTN Silent p.A27812A 0.12 TCGA-EE-A2MG-06 2 179450006 179450006 G A TTN Missense_Mutation p.H21489Y 0.17 TCGA-EE-A2MG-06 2 179470419 179470419 C T TTN Missense_Mutation p.R17868K 0.13 TCGA-EE-A2MG-06 2 179612027 179612027 C T TTN Intron 0.24 TCGA-EE-A2MG-06 2 185802785 185802785 C T ZNF804A Missense_Mutation p.P888S 0.13 tolerated(0.77) benign(0.01) TCGA-EE-A2MG-06 2 21231507 21231507 G A APOB Missense_Mutation p.H2745Y 0.15 benign(0.25) TCGA-EE-A2MG-06 2 225266283 225266283 G A FAM124B Missense_Mutation p.S68F 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 2 230910836 230910836 G A SLC16A14 Missense_Mutation p.H336Y 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A2MG-06 2 233323358 233323358 G A ALPI Silent p.K400K 0.30 TCGA-EE-A2MG-06 2 234072391 234072391 C T INPP5D Missense_Mutation p.L415F 0.08 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A2MG-06 2 238285737 238285737 C A COL6A3 Silent p.L916L 0.17 TCGA-EE-A2MG-06 2 28631669 28631669 G A FOSL2 Missense_Mutation p.R133K 0.14 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MG-06 2 3627805 3627805 A G RPS7 Missense_Mutation p.I154M 0.14 tolerated(0.23) benign(0.345) TCGA-EE-A2MG-06 2 68772353 68772353 C T APLF Missense_Mutation p.P399S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 2 71577070 71577070 C T ZNF638 Missense_Mutation p.P329L 0.11 deleterious(0) possibly_damaging(0.548) TCGA-EE-A2MG-06 2 74274273 74274273 C T TET3 Missense_Mutation p.P275L 0.15 deleterious(0.01) benign(0.11) TCGA-EE-A2MG-06 2 74709766 74709766 A T CCDC142 Missense_Mutation p.Y67N 0.28 tolerated_low_confidence(0.23) benign(0) TCGA-EE-A2MG-06 2 98810890 98810890 G A VWA3B Missense_Mutation p.E558K 0.14 tolerated(0.06) benign(0.168) TCGA-EE-A2MG-06 3 111768813 111768813 C T TMPRSS7 Missense_Mutation p.P235L 0.09 deleterious(0) benign(0.187) TCGA-EE-A2MG-06 3 119301094 119301094 C T ADPRH Silent p.F26F 0.19 TCGA-EE-A2MG-06 3 12977268 12977268 G A IQSEC1 Silent p.L430L 0.21 TCGA-EE-A2MG-06 3 14862002 14862002 G A FGD5 Missense_Mutation p.R475K 0.17 tolerated(0.07) benign(0.021) TCGA-EE-A2MG-06 3 151156350 151156350 G A IGSF10 Missense_Mutation p.S2000F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 3 164735612 164735612 C T SI Silent p.G1190G 0.17 TCGA-EE-A2MG-06 3 167000208 167000208 G A ZBBX Missense_Mutation p.S691L 0.14 tolerated(0.44) benign(0.045) TCGA-EE-A2MG-06 3 182631767 182631767 C T ATP11B Missense_Mutation p.P1146L 0.16 tolerated_low_confidence(0.08) benign(0.001) TCGA-EE-A2MG-06 3 193039562 193039562 G A ATP13A5 Missense_Mutation p.S608F 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MG-06 3 3081846 3081846 G A CNTN4 Silent p.R763R 0.15 TCGA-EE-A2MG-06 3 32776307 32776307 G A CNOT10 Silent p.S511S 0.15 TCGA-EE-A2MG-06 3 37785434 37785434 C T ITGA9 Missense_Mutation p.S781F 0.09 deleterious(0) possibly_damaging(0.789) TCGA-EE-A2MG-06 3 407673 407673 C T CHL1 Silent p.I542I 0.16 TCGA-EE-A2MG-06 3 46307036 46307036 C T CCR3 Silent p.I150I 0.26 TCGA-EE-A2MG-06 3 52326291 52326291 C T GLYCTK Silent p.L241L 0.10 TCGA-EE-A2MG-06 3 52823754 52823754 C T ITIH1 Silent p.I735I 0.13 TCGA-EE-A2MG-06 3 55107818 55107818 A C CACNA2D3 Missense_Mutation p.K1039Q 0.24 tolerated(0.09) possibly_damaging(0.551) TCGA-EE-A2MG-06 3 58084611 58084611 C T FLNB Missense_Mutation p.P441S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 3 67058562 67058562 C T KBTBD8 Missense_Mutation p.S520F 0.16 tolerated(0.42) benign(0.004) TCGA-EE-A2MG-06 3 68587978 68587978 C T FAM19A1 Missense_Mutation p.P111S 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MG-06 3 85984998 85984998 G A CADM2 Missense_Mutation p.G254E 0.14 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MG-06 4 114279286 114279286 C T ANK2 Missense_Mutation p.S3171L 0.17 benign(0.007) TCGA-EE-A2MG-06 4 122846297 122846297 C T TRPC3 Missense_Mutation p.R351Q 0.17 deleterious(0.05) possibly_damaging(0.714) TCGA-EE-A2MG-06 4 166916254 166916254 G A TLL1 Missense_Mutation p.E186K 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-EE-A2MG-06 4 167658662 167658662 C T SPOCK3 Missense_Mutation p.G366E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 4 169204704 169204704 G A DDX60 Nonsense_Mutation p.Q539* 0.24 TCGA-EE-A2MG-06 4 186548051 186548051 C T SORBS2 Missense_Mutation p.G386E 0.13 deleterious(0.03) possibly_damaging(0.897) TCGA-EE-A2MG-06 4 20598237 20598237 C T SLIT2 Missense_Mutation p.P1174S 0.10 tolerated(0.25) probably_damaging(0.998) TCGA-EE-A2MG-06 4 39757304 39757304 C T UBE2K Missense_Mutation p.P82S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 4 436857 436857 G A ZNF721 Missense_Mutation p.H467Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MG-06 4 69512977 69512977 C T UGT2B15 Missense_Mutation p.A480T 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MG-06 4 71507955 71507955 G A ENAM Missense_Mutation p.G271E 0.11 tolerated(0.06) probably_damaging(0.961) TCGA-EE-A2MG-06 4 74274451 74274451 C T ALB Silent p.P137P 0.11 TCGA-EE-A2MG-06 4 74863311 74863311 C T CXCL5 3'UTR 0.16 TCGA-EE-A2MG-06 4 85731300 85731300 T G WDFY3 Silent p.A695A 0.19 TCGA-EE-A2MG-06 5 110819937 110819937 G A CAMK4 Missense_Mutation p.A399T 0.18 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A2MG-06 5 140222821 140222821 G A PCDHA8 Missense_Mutation p.E639K 0.22 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-EE-A2MG-06 5 140480627 140480627 G A PCDHB3 Missense_Mutation p.V132I 0.18 tolerated_low_confidence(0.23) benign(0.002) TCGA-EE-A2MG-06 5 140573805 140573805 C T PCDHB10 Silent p.F560F 0.25 TCGA-EE-A2MG-06 5 150726974 150726974 G A SLC36A2 Silent p.I16I 0.15 TCGA-EE-A2MG-06 5 17354341 17354341 C T CTD-2139B15.2 RNA 0.25 TCGA-EE-A2MG-06 5 34028868 34028868 G A C1QTNF3 Missense_Mutation p.P231S 0.15 tolerated(0.16) probably_damaging(0.99) TCGA-EE-A2MG-06 5 34998865 34998865 G A AGXT2 Missense_Mutation p.R502C 0.12 deleterious(0.03) benign(0.005) TCGA-EE-A2MG-06 5 38886238 38886238 G A OSMR Missense_Mutation p.E313K 0.15 tolerated(0.06) benign(0.266) TCGA-EE-A2MG-06 5 67575450 67575450 G A PIK3R1 Missense_Mutation p.E175K 0.14 tolerated(0.17) benign(0.038) TCGA-EE-A2MG-06 5 71494538 71494538 C T MAP1B Missense_Mutation p.P1786S 0.15 probably_damaging(0.998) TCGA-EE-A2MG-06 5 76707543 76707543 A G PDE8B Missense_Mutation p.K525E 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MG-06 5 90072347 90072347 C T GPR98 Missense_Mutation p.L4161F 0.13 possibly_damaging(0.86) TCGA-EE-A2MG-06 5 9154652 9154652 C T SEMA5A Missense_Mutation p.E477K 0.11 tolerated(0.31) benign(0.008) TCGA-EE-A2MG-06 6 116289877 116289877 G A FRK Silent p.H164H 0.15 TCGA-EE-A2MG-06 6 123319073 123319073 G A CLVS2 Missense_Mutation p.D51N 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MG-06 6 165756929 165756929 G A PDE10A Missense_Mutation p.P683L 0.13 tolerated(0.06) benign(0.391) TCGA-EE-A2MG-06 6 167550187 167550187 C T CCR6 Nonsense_Mutation p.R157* 0.17 TCGA-EE-A2MG-06 6 168443323 168443323 G A KIF25 Silent p.G304G 0.11 TCGA-EE-A2MG-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.15 tolerated_low_confidence(0.07) benign(0.108) TCGA-EE-A2MG-06 6 35258133 35258133 C T ZNF76 Missense_Mutation p.L175F 0.11 deleterious(0.04) possibly_damaging(0.489) TCGA-EE-A2MG-06 6 55264062 55264062 C T GFRAL Missense_Mutation p.S346F 0.22 deleterious(0.02) benign(0.035) TCGA-EE-A2MG-06 6 73905118 73905118 C T KCNQ5 Missense_Mutation p.P946L 0.17 tolerated_low_confidence(0.13) benign(0.012) TCGA-EE-A2MG-06 6 73935121 73935121 C T KHDC1L Missense_Mutation p.G4E 0.17 tolerated_low_confidence(0.07) benign(0.004) TCGA-EE-A2MG-06 6 93967240 93967240 C T EPHA7 Silent p.G704G 0.12 TCGA-EE-A2MG-06 7 100189493 100189493 C T FBXO24 Missense_Mutation p.R214C 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.689) TCGA-EE-A2MG-06 7 100361534 100361534 A G ZAN Silent p.P1364P 0.07 TCGA-EE-A2MG-06 7 100678178 100678178 C T MUC17 Missense_Mutation p.P1161S 0.17 unknown(0) TCGA-EE-A2MG-06 7 100839230 100839230 G A MOGAT3 Silent p.I341I 0.11 TCGA-EE-A2MG-06 7 11101640 11101640 A G PHF14 Missense_Mutation p.K861R 0.13 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A2MG-06 7 123277012 123277012 G A ASB15 Missense_Mutation p.G582R 0.15 deleterious(0) possibly_damaging(0.813) TCGA-EE-A2MG-06 7 126249460 126249460 C T GRM8 Missense_Mutation p.E484K 0.17 tolerated(0.62) benign(0.367) TCGA-EE-A2MG-06 7 13949261 13949261 G A ETV1 Silent p.F312F 0.10 TCGA-EE-A2MG-06 7 139757831 139757831 C T PARP12 Silent p.K110K 0.10 TCGA-EE-A2MG-06 7 139796708 139796708 G A KDM7A Missense_Mutation p.P719L 0.17 deleterious(0.03) benign(0.03) TCGA-EE-A2MG-06 7 140301949 140301949 C T DENND2A Silent p.R83R 0.14 TCGA-EE-A2MG-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MG-06 7 142124202 142124202 G A TRBV6-8 Silent p.F92F 0.19 TCGA-EE-A2MG-06 7 142223960 142223960 C T TRBV11-1 Silent p.Q69Q 0.13 TCGA-EE-A2MG-06 7 142326843 142326843 C T TRBV19 Silent p.N47N 0.23 TCGA-EE-A2MG-06 7 142460296 142460296 G A PRSS1 Missense_Mutation p.E157K 0.10 tolerated(0.94) benign(0.002) TCGA-EE-A2MG-06 7 143792740 143792740 C T OR2A12 Silent p.I180I 0.13 TCGA-EE-A2MG-06 7 148288069 148288069 C T C7orf33 Missense_Mutation p.P18S 0.21 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A2MG-06 7 27169083 27169083 G A HOXA4 Missense_Mutation p.R242W 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 7 27169084 27169084 G A HOXA4 Silent p.T241T 0.14 TCGA-EE-A2MG-06 7 27880461 27880461 C T JAZF1 Silent p.V137V 0.12 TCGA-EE-A2MG-06 7 4947052 4947052 G A MMD2 Missense_Mutation p.T263I 0.18 deleterious(0.01) benign(0.081) TCGA-EE-A2MG-06 7 53103832 53103832 G A POM121L12 Silent p.Q156Q 0.20 TCGA-EE-A2MG-06 7 72865315 72865315 C T BAZ1B Missense_Mutation p.A1148T 0.08 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A2MG-06 7 76889513 76889513 G A CCDC146 Missense_Mutation p.E316K 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MG-06 7 86522373 86522373 C T KIAA1324L Missense_Mutation p.G910E 0.10 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A2MG-06 7 95761116 95761116 G A SLC25A13 Silent p.S511S 0.20 TCGA-EE-A2MG-06 7 95761117 95761117 G A SLC25A13 Missense_Mutation p.S511F 0.18 tolerated(0.7) benign(0.006) TCGA-EE-A2MG-06 8 102555576 102555576 C T GRHL2 Missense_Mutation p.P43L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 8 108315569 108315569 C T ANGPT1 Missense_Mutation p.E279K 0.12 tolerated(0.17) benign(0.11) TCGA-EE-A2MG-06 8 110457018 110457018 G T PKHD1L1 Silent p.L1640L 0.19 TCGA-EE-A2MG-06 8 110457481 110457481 G A PKHD1L1 Missense_Mutation p.E1795K 0.13 deleterious(0.01) benign(0.155) TCGA-EE-A2MG-06 8 121381647 121381647 G A COL14A1 Missense_Mutation p.G1745E 0.26 deleterious(0) probably_damaging(0.92) TCGA-EE-A2MG-06 8 124195487 124195487 G A FAM83A Missense_Mutation p.E131K 0.12 tolerated(0.2) possibly_damaging(0.744) TCGA-EE-A2MG-06 8 125025757 125025757 C T FER1L6 Silent p.F636F 0.17 TCGA-EE-A2MG-06 8 142221565 142221565 C T SLC45A4 Silent p.P791P 0.11 TCGA-EE-A2MG-06 8 144946534 144946534 G A EPPK1 Silent p.G296G 0.19 TCGA-EE-A2MG-06 8 145106331 145106331 C T OPLAH Missense_Mutation p.D1255N 0.31 tolerated(0.45) benign(0.003) TCGA-EE-A2MG-06 8 25708118 25708118 C T EBF2 Missense_Mutation p.G563E 0.18 deleterious_low_confidence(0) benign(0.188) TCGA-EE-A2MG-06 8 51442742 51442742 C T SNTG1 Missense_Mutation p.P158S 0.19 tolerated(0.33) benign(0.004) TCGA-EE-A2MG-06 8 57228854 57228854 G A SDR16C5 Missense_Mutation p.S18L 0.13 tolerated(0.74) benign(0.002) TCGA-EE-A2MG-06 8 61178492 61178492 G A CA8 Missense_Mutation p.P137S 0.10 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A2MG-06 8 65528505 65528505 C T CYP7B1 Missense_Mutation p.G198E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MG-06 8 67086849 67086849 C T TRIM55 3'UTR 0.12 TCGA-EE-A2MG-06 8 73849879 73849879 G A KCNB2 Silent p.Q763Q 0.16 TCGA-EE-A2MG-06 9 107331655 107331655 C T OR13C8 Silent p.L69L 0.08 TCGA-EE-A2MG-06 9 107332092 107332092 C T OR13C8 Missense_Mutation p.S215F 0.25 tolerated(1) benign(0.023) TCGA-EE-A2MG-06 9 113096559 113096559 G A TXNDC8 Silent p.L22L 0.15 TCGA-EE-A2MG-06 9 121929846 121929846 G A BRINP1 Missense_Mutation p.T601I 0.20 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MG-06 9 17786438 17786438 G A SH3GL2 Missense_Mutation p.G83R 0.16 tolerated(0.33) probably_damaging(0.99) TCGA-EE-A2MG-06 9 77300565 77300565 G A RORB 3'UTR 0.13 TCGA-EE-A2MG-06 9 77417015 77417015 C T TRPM6 Missense_Mutation p.G603D 0.21 tolerated(0.28) benign(0.076) TCGA-EE-A2MG-06 9 79244197 79244197 G A PRUNE2 Silent p.F3020F 0.21 TCGA-EE-A2MG-06 9 96278434 96278434 C T FAM120A Missense_Mutation p.S434F 0.14 deleterious(0.01) benign(0.426) TCGA-EE-A2MG-06 X 100511121 100511121 A T DRP2 Missense_Mutation p.Y754F 0.34 tolerated(0.11) benign(0.031) TCGA-EE-A2MG-06 X 124097638 124097638 G A TENM1 5'UTR 0.30 TCGA-EE-A2MG-06 X 153069219 153069219 G A PDZD4 Silent p.T633T 0.30 TCGA-EE-A2MG-06 X 153524338 153524338 G A TKTL1 Silent p.T42T 0.29 TCGA-EE-A2MG-06 X 21624974 21624974 G A CNKSR2 Missense_Mutation p.D708N 0.41 tolerated(0.05) probably_damaging(0.971) TCGA-EE-A2MG-06 X 3229204 3229204 G A MXRA5 Missense_Mutation p.T2347I 0.40 tolerated(0.11) benign(0.008) TCGA-EE-A2MG-06 X 69615626 69615626 C G KIF4A Missense_Mutation p.Q780E 0.35 tolerated(0.23) benign(0.081) TCGA-EE-A2MH-06 10 106074637 106074637 G A ITPRIP Silent p.F391F 0.28 TCGA-EE-A2MH-06 10 128908530 128908530 C T DOCK1 Silent p.F824F 0.17 TCGA-EE-A2MH-06 10 52596009 52596009 G A A1CF Silent p.I151I 0.19 TCGA-EE-A2MH-06 10 61831846 61831846 C T ANK3 Silent p.R2931R 0.22 TCGA-EE-A2MH-06 10 95111489 95111489 C T MYOF Missense_Mutation p.G1199E 0.23 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A2MH-06 10 98823948 98823948 G A SLIT1 Silent p.N202N 0.23 TCGA-EE-A2MH-06 11 100922294 100922294 G A PGR Nonsense_Mutation p.R740* 0.12 TCGA-EE-A2MH-06 11 10649302 10649302 C T MRVI1 Silent p.G237G 0.18 TCGA-EE-A2MH-06 11 12248673 12248673 C T MICAL2 Missense_Mutation p.P664S 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MH-06 11 15260544 15260544 C T INSC Silent p.V486V 0.16 TCGA-EE-A2MH-06 11 2189398 2189398 G A TH Missense_Mutation p.P198S 0.19 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MH-06 11 35685280 35685280 C T TRIM44 Silent p.H207H 0.12 TCGA-EE-A2MH-06 11 61533566 61533566 C T MYRF Missense_Mutation p.P91S 0.15 tolerated(0.22) benign(0.394) TCGA-EE-A2MH-06 11 6422601 6422601 G A APBB1 Missense_Mutation p.S519F 0.23 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A2MH-06 11 7064040 7064040 C T NLRP14 Silent p.F261F 0.11 TCGA-EE-A2MH-06 11 71276908 71276908 G A KRTAP5-10 Missense_Mutation p.G92E 0.18 unknown(0) TCGA-EE-A2MH-06 12 10005877 10005877 C T CLEC2B 3'UTR 0.30 TCGA-EE-A2MH-06 12 100904705 100904705 C T NR1H4 Missense_Mutation p.P87S 0.19 tolerated(0.34) benign(0.001) TCGA-EE-A2MH-06 12 101368591 101368591 C T ANO4 Intron 0.17 TCGA-EE-A2MH-06 12 101493391 101493391 G A ANO4 Missense_Mutation p.R646Q 0.23 tolerated(0.06) benign(0.064) TCGA-EE-A2MH-06 12 13722818 13722818 C T GRIN2B Missense_Mutation p.D769N 0.14 tolerated(0.38) benign(0.008) TCGA-EE-A2MH-06 12 3018702 3018702 C T TULP3 Missense_Mutation p.H17Y 0.22 deleterious_low_confidence(0.04) benign(0.422) TCGA-EE-A2MH-06 12 38714623 38714623 C T ALG10B Missense_Mutation p.H344Y 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 12 46601355 46601355 C T SLC38A1 Silent p.G146G 0.19 TCGA-EE-A2MH-06 12 48537892 48537892 G A PFKM Silent p.G719G 0.23 TCGA-EE-A2MH-06 12 54796799 54796799 G A ITGA5 Silent p.I650I 0.24 TCGA-EE-A2MH-06 12 57423022 57423022 C T MYO1A Missense_Mutation p.G967R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 12 66308895 66308895 C T HMGA2 Intron 0.23 TCGA-EE-A2MH-06 12 80733024 80733024 C T OTOGL Missense_Mutation p.S1668F 0.20 tolerated(0.2) benign(0.365) TCGA-EE-A2MH-06 12 8757480 8757480 C T AICDA Missense_Mutation p.E156K 0.16 tolerated(0.78) benign(0.018) TCGA-EE-A2MH-06 12 8990983 8990983 C G A2ML1 Missense_Mutation p.L303V 0.20 deleterious(0.04) benign(0.403) TCGA-EE-A2MH-06 13 38266446 38266446 C T TRPC4 Silent p.Q308Q 0.16 TCGA-EE-A2MH-06 13 41706224 41706224 C G KBTBD6 Missense_Mutation p.E142Q 0.17 tolerated(1) benign(0.002) TCGA-EE-A2MH-06 14 24517982 24517982 C T LRRC16B 5'Flank 0.30 TCGA-EE-A2MH-06 15 22473007 22473007 G A IGHV4OR15-8 Silent p.T88T 0.09 TCGA-EE-A2MH-06 15 73616490 73616490 C T HCN4 Missense_Mutation p.E695K 0.20 deleterious(0) unknown(0) TCGA-EE-A2MH-06 15 78580681 78580681 G A WDR61 Silent p.S202S 0.16 TCGA-EE-A2MH-06 15 83226629 83226629 G A CPEB1 Missense_Mutation p.P163S 0.20 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A2MH-06 16 10788757 10788757 A C TEKT5 5'UTR 0.09 TCGA-EE-A2MH-06 16 19471642 19471642 G A TMC5 Silent p.E378E 0.17 TCGA-EE-A2MH-06 16 31131665 31131665 C T KAT8 Missense_Mutation p.R98W 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 16 56857657 56857657 A C NUP93 Silent p.T231T 0.17 TCGA-EE-A2MH-06 16 57756701 57756701 C T CCDC135 Silent p.Y452Y 0.22 TCGA-EE-A2MH-06 16 81324232 81324232 T G BCMO1 3'UTR 0.27 TCGA-EE-A2MH-06 17 1399170 1399170 G A INPP5K Missense_Mutation p.P432S 0.15 tolerated(0.47) benign(0.08) TCGA-EE-A2MH-06 17 35545396 35545396 C T ACACA Missense_Mutation p.V1533I 0.19 tolerated(0.36) probably_damaging(0.994) TCGA-EE-A2MH-06 17 35545397 35545397 C T ACACA Missense_Mutation p.M1532I 0.19 tolerated(0.1) probably_damaging(0.974) TCGA-EE-A2MH-06 17 36104852 36104852 G A HNF1B Silent p.L8L 0.23 TCGA-EE-A2MH-06 17 36498878 36498878 C T GPR179 Splice_Site p.X265_splice 0.21 TCGA-EE-A2MH-06 17 39316833 39316833 G A KRTAP4-4 Silent p.R37R 0.16 TCGA-EE-A2MH-06 17 40840998 40840998 C T CNTNAP1 Silent p.L521L 0.14 TCGA-EE-A2MH-06 17 41004605 41004605 C T AOC3 Silent p.F415F 0.18 TCGA-EE-A2MH-06 17 43591986 43591986 G A LRRC37A4P RNA 0.15 TCGA-EE-A2MH-06 17 4686323 4686323 G A TM4SF5 Silent p.R190R 0.18 TCGA-EE-A2MH-06 17 5042836 5042836 C T USP6 Silent p.P455P 0.21 TCGA-EE-A2MH-06 17 73888441 73888443 CTC - TRIM65 In_Frame_Del p.E217del 0.23 TCGA-EE-A2MH-06 17 76354760 76354760 T A SOCS3 Silent p.P139P 0.18 TCGA-EE-A2MH-06 18 61558795 61558795 G A SERPINB2 Missense_Mutation p.M39I 0.14 deleterious(0.01) benign(0.015) TCGA-EE-A2MH-06 19 1036119 1036119 C T CNN2 Intron 0.17 TCGA-EE-A2MH-06 19 12060222 12060222 T A ZNF700 Silent p.L461L 0.13 TCGA-EE-A2MH-06 19 12791116 12791116 C T DHPS Silent p.L77L 0.17 TCGA-EE-A2MH-06 19 18391905 18391905 G T JUND Silent p.A130A 0.19 TCGA-EE-A2MH-06 19 19349170 19349170 C T NCAN Missense_Mutation p.S1120F 0.18 deleterious(0) benign(0.243) TCGA-EE-A2MH-06 19 46838216 46838216 C T HIF3A Missense_Mutation p.P629S 0.28 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2MH-06 19 49949823 49949823 G A PIH1D1 Silent p.F272F 0.24 TCGA-EE-A2MH-06 19 50333967 50333967 T A MED25 Silent p.P308P 0.13 TCGA-EE-A2MH-06 19 50881459 50881459 C T NR1H2 Missense_Mutation p.P79S 0.20 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MH-06 19 50881460 50881460 C T NR1H2 Missense_Mutation p.P79L 0.20 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MH-06 19 54823255 54823255 C T LILRA5 Silent p.K96K 0.19 TCGA-EE-A2MH-06 19 55049184 55049184 G A KIR3DX1 Missense_Mutation p.E317K 0.21 tolerated_low_confidence(0.13) benign(0.351) TCGA-EE-A2MH-06 19 57640197 57640197 C T USP29 Nonsense_Mutation p.Q52* 0.23 TCGA-EE-A2MH-06 19 9074606 9074606 G A MUC16 Silent p.I4280I 0.24 TCGA-EE-A2MH-06 19 9090533 9090533 C T MUC16 Missense_Mutation p.E428K 0.13 unknown(0) TCGA-EE-A2MH-06 1 12628431 12628431 C T DHRS3 Missense_Mutation p.E283K 0.18 tolerated(0.93) benign(0.105) TCGA-EE-A2MH-06 1 145296555 145296555 C T NBPF10 Silent p.V159V 0.13 TCGA-EE-A2MH-06 1 152785221 152785221 C T LCE1B Missense_Mutation p.S100F 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MH-06 1 153732863 153732863 C T INTS3 Silent p.C438C 0.21 TCGA-EE-A2MH-06 1 154558739 154558739 G A ADAR Silent p.I1040I 0.22 TCGA-EE-A2MH-06 1 155230209 155230209 C T SCAMP3 Silent p.L100L 0.16 TCGA-EE-A2MH-06 1 17292570 17292570 C T CROCC Missense_Mutation p.S1551L 0.12 possibly_damaging(0.519) TCGA-EE-A2MH-06 1 17563906 17563906 G A PADI1 Missense_Mutation p.G471S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 1 176681065 176681065 G A PAPPA2 Missense_Mutation p.R1249K 0.26 tolerated(0.8) benign(0.002) TCGA-EE-A2MH-06 1 19596128 19596128 G A AKR7L Intron 0.17 TCGA-EE-A2MH-06 1 197115410 197115410 C T ASPM Missense_Mutation p.G53E 0.13 deleterious(0) probably_damaging(0.92) TCGA-EE-A2MH-06 1 197115411 197115411 C T ASPM Missense_Mutation p.G53R 0.12 deleterious(0) possibly_damaging(0.519) TCGA-EE-A2MH-06 1 197390977 197390977 G A CRB1 Silent p.K673K 0.18 TCGA-EE-A2MH-06 1 200587607 200587607 G A KIF14 Missense_Mutation p.P82L 0.15 tolerated(1) benign(0.013) TCGA-EE-A2MH-06 1 214170185 214170185 A T PROX1 Nonsense_Mutation p.K103* 0.23 TCGA-EE-A2MH-06 1 22186396 22186396 G A HSPG2 Missense_Mutation p.P1705L 0.25 probably_damaging(1) TCGA-EE-A2MH-06 1 231509788 231509788 G A EGLN1 Missense_Mutation p.P317S 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MH-06 1 237947632 237947632 C T RYR2 Missense_Mutation p.S4207L 0.20 probably_damaging(0.986) TCGA-EE-A2MH-06 1 247587254 247587254 G A NLRP3 Missense_Mutation p.R170Q 0.28 tolerated(0.12) benign(0.007) TCGA-EE-A2MH-06 1 42880571 42880571 G A RIMKLA Missense_Mutation p.A368T 0.15 tolerated_low_confidence(0.41) benign(0.01) TCGA-EE-A2MH-06 1 6488372 6488372 C T ESPN Silent p.G127G 0.23 TCGA-EE-A2MH-06 1 82408687 82408687 G A LPHN2 Silent p.V144V 0.21 TCGA-EE-A2MH-06 1 897419 897419 C A KLHL17 Missense_Mutation p.L235M 0.09 tolerated(0.14) possibly_damaging(0.823) TCGA-EE-A2MH-06 20 22562615 22562615 G A FOXA2 Missense_Mutation p.S422F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MH-06 20 31814777 31814777 G A BPIFA3 Silent p.V221V 0.15 TCGA-EE-A2MH-06 20 51872823 51872823 C T TSHZ2 Silent p.I942I 0.10 TCGA-EE-A2MH-06 20 52193137 52193137 T C ZNF217 Silent p.P722P 0.08 TCGA-EE-A2MH-06 20 58322850 58322850 G A PHACTR3 Silent p.E106E 0.39 TCGA-EE-A2MH-06 20 61450607 61450607 C T COL9A3 Missense_Mutation p.P73S 0.28 tolerated(0.05) unknown(0) TCGA-EE-A2MH-06 20 61450608 61450608 C T COL9A3 Missense_Mutation p.P73L 0.28 deleterious(0) unknown(0) TCGA-EE-A2MH-06 20 62120337 62120337 C T EEF1A2 Missense_Mutation p.A400T 0.76 deleterious_low_confidence(0.01) possibly_damaging(0.874) TCGA-EE-A2MH-06 20 62120338 62120338 C T EEF1A2 Silent p.A399A 0.76 TCGA-EE-A2MH-06 20 62329813 62329813 C T TNFRSF6B Missense_Mutation p.A267V 0.69 tolerated(0.26) benign(0.013) TCGA-EE-A2MH-06 22 24583578 24583578 C T SUSD2 Missense_Mutation p.S644F 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MH-06 22 32586943 32586943 G A RFPL2 Missense_Mutation p.S318F 0.15 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MH-06 22 38120944 38120944 C T TRIOBP Missense_Mutation p.S794F 0.11 tolerated_low_confidence(0.15) benign(0.01) TCGA-EE-A2MH-06 2 113953852 113953852 G A PSD4 Missense_Mutation p.R785Q 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 2 133427523 133427523 G A LYPD1 5'UTR 0.31 TCGA-EE-A2MH-06 2 152512464 152512464 T C NEB Missense_Mutation p.E2190G 0.22 probably_damaging(0.971) TCGA-EE-A2MH-06 2 162627522 162627522 C T SLC4A10 Missense_Mutation p.R30C 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A2MH-06 2 166164425 166164425 C T SCN2A Missense_Mutation p.P152S 0.16 deleterious(0.05) benign(0.042) TCGA-EE-A2MH-06 2 178592803 178592803 C T PDE11A Missense_Mutation p.R629Q 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A2MH-06 2 179645974 179645974 T G TTN Missense_Mutation p.N1133H 0.09 TCGA-EE-A2MH-06 2 179720181 179720181 C T CCDC141 Missense_Mutation p.E985K 0.11 tolerated(0.13) probably_damaging(0.979) TCGA-EE-A2MH-06 2 179720182 179720182 C T CCDC141 Silent p.L984L 0.11 TCGA-EE-A2MH-06 2 196651856 196651856 G A DNAH7 Missense_Mutation p.H3586Y 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 2 228228545 228228545 T C TM4SF20 Silent p.L195L 0.07 TCGA-EE-A2MH-06 2 233347174 233347174 G A ECEL1 Missense_Mutation p.P584S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MH-06 2 38178791 38178791 G A RMDN2 Missense_Mutation p.D145N 0.22 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A2MH-06 2 65299569 65299569 T C CEP68 Missense_Mutation p.S447P 0.20 tolerated(0.16) possibly_damaging(0.457) TCGA-EE-A2MH-06 2 86308727 86308727 G A POLR1A Missense_Mutation p.S307L 0.23 deleterious(0.02) possibly_damaging(0.752) TCGA-EE-A2MH-06 2 99988160 99988160 G A EIF5B Missense_Mutation p.E507K 0.10 probably_damaging(0.931) TCGA-EE-A2MH-06 3 151598689 151598689 C T SUCNR1 Nonsense_Mutation p.R120* 0.17 TCGA-EE-A2MH-06 3 193207530 193207530 C T ATP13A4 Missense_Mutation p.D243N 0.16 tolerated(0.13) probably_damaging(0.982) TCGA-EE-A2MH-06 3 21467126 21467126 C T ZNF385D Missense_Mutation p.G237E 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MH-06 3 38924754 38924754 G A SCN11A Silent p.I1063I 0.22 TCGA-EE-A2MH-06 3 46750656 46750656 G A TMIE Silent p.R84R 0.17 TCGA-EE-A2MH-06 3 50005389 50005389 C T RBM6 Silent p.G177G 0.18 TCGA-EE-A2MH-06 3 50334157 50334157 G A NAT6 Silent p.P268P 0.17 TCGA-EE-A2MH-06 3 50334616 50334616 G A NAT6 Silent p.S115S 0.21 TCGA-EE-A2MH-06 3 50614942 50614942 C T HEMK1 Silent p.S184S 0.16 TCGA-EE-A2MH-06 3 52409265 52409265 A C DNAH1 Missense_Mutation p.K2332T 0.17 benign(0.221) TCGA-EE-A2MH-06 3 69220939 69220939 C G FRMD4B 3'UTR 0.14 TCGA-EE-A2MH-06 3 9743533 9743533 C T MTMR14 Missense_Mutation p.A610V 0.23 tolerated(0.1) probably_damaging(0.97) TCGA-EE-A2MH-06 4 110737533 110737533 C T GAR1 Silent p.V71V 0.24 TCGA-EE-A2MH-06 4 113352711 113352711 C T ALPK1 Missense_Mutation p.P670S 0.19 tolerated(0.29) benign(0.015) TCGA-EE-A2MH-06 4 126369632 126369632 G A FAT4 Silent p.A2487A 0.12 TCGA-EE-A2MH-06 4 129880925 129880925 C A SCLT1 Missense_Mutation p.V293L 0.20 deleterious(0.04) benign(0.032) TCGA-EE-A2MH-06 4 15063885 15063886 - T CPEB2 Splice_Site p.X959_splice 0.17 TCGA-EE-A2MH-06 4 151773051 151773051 G A LRBA Nonsense_Mutation p.R1271* 0.18 TCGA-EE-A2MH-06 4 154318395 154318395 G A MND1 Missense_Mutation p.E126K 0.41 tolerated(0.2) benign(0.344) TCGA-EE-A2MH-06 4 164394874 164394874 C T TKTL2 Missense_Mutation p.D5N 0.18 tolerated(0.52) benign(0.002) TCGA-EE-A2MH-06 4 167020441 167020441 G A TLL1 Missense_Mutation p.R890Q 0.20 tolerated(0.45) benign(0.064) TCGA-EE-A2MH-06 4 25260689 25260689 T G PI4K2B Missense_Mutation p.Y263D 0.09 deleterious(0) benign(0.425) TCGA-EE-A2MH-06 4 3948555 3948555 C T FAM86EP Intron 0.27 TCGA-EE-A2MH-06 4 3948556 3948556 C T FAM86EP Intron 0.27 TCGA-EE-A2MH-06 4 55561754 55561754 C T KIT Silent p.V48V 0.30 TCGA-EE-A2MH-06 4 6863951 6863951 C T KIAA0232 Silent p.L614L 0.23 TCGA-EE-A2MH-06 4 90169804 90169804 C T GPRIN3 Silent p.G486G 0.16 TCGA-EE-A2MH-06 5 121780263 121780263 G A SNCAIP Silent p.L476L 0.19 TCGA-EE-A2MH-06 5 13864533 13864533 A C DNAH5 Silent p.P1523P 0.17 TCGA-EE-A2MH-06 5 138749830 138749830 T A DNAJC18 3'UTR 0.30 TCGA-EE-A2MH-06 5 147466006 147466006 G A SPINK5 Silent p.G107G 0.14 TCGA-EE-A2MH-06 5 150838401 150838401 C T SLC36A1 Silent p.S16S 0.13 TCGA-EE-A2MH-06 5 153030046 153030046 C T GRIA1 Missense_Mutation p.S216L 0.24 tolerated(0.44) benign(0.207) TCGA-EE-A2MH-06 5 17354186 17354186 C T CTD-2139B15.2 Intron 0.12 TCGA-EE-A2MH-06 5 179729450 179729450 G A GFPT2 Silent p.F659F 0.10 TCGA-EE-A2MH-06 5 35086320 35086320 G A PRLR Missense_Mutation p.H65Y 0.13 tolerated(1) benign(0.008) TCGA-EE-A2MH-06 5 43651923 43651923 C T NNT Silent p.L600L 0.19 TCGA-EE-A2MH-06 5 45261959 45261959 A G HCN1 3'UTR 0.08 TCGA-EE-A2MH-06 5 72743629 72743629 G A FOXD1 Missense_Mutation p.P187S 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2MH-06 5 88018700 88018700 G A MEF2C Silent p.S391S 0.19 TCGA-EE-A2MH-06 6 31516145 31516145 G A NFKBIL1 Missense_Mutation p.G88E 0.24 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MH-06 6 36070420 36070420 C A MAPK14 Missense_Mutation p.P279T 0.13 deleterious(0) possibly_damaging(0.481) TCGA-EE-A2MH-06 6 36070421 36070421 C T MAPK14 Missense_Mutation p.P279L 0.13 deleterious(0.03) possibly_damaging(0.7) TCGA-EE-A2MH-06 6 43418616 43418616 C T DLK2 Silent p.V271V 0.25 TCGA-EE-A2MH-06 6 45399682 45399682 G A RUNX2 Missense_Mutation p.R169Q 0.17 deleterious(0) probably_damaging(0.922) TCGA-EE-A2MH-06 6 55935586 55935586 C T COL21A1 Missense_Mutation p.G659D 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MH-06 6 73904758 73904758 G A KCNQ5 Missense_Mutation p.S826N 0.19 tolerated_low_confidence(0.48) benign(0.004) TCGA-EE-A2MH-06 6 75799907 75799907 C T COL12A1 Missense_Mutation p.G2954R 0.27 probably_damaging(1) TCGA-EE-A2MH-06 6 96651733 96651733 C T FUT9 Silent p.T234T 0.21 TCGA-EE-A2MH-06 7 103230152 103230152 C T RELN Missense_Mutation p.G1346R 0.46 tolerated(0.06) possibly_damaging(0.668) TCGA-EE-A2MH-06 7 123508989 123508989 C T HYAL4 Missense_Mutation p.P221L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MH-06 7 143175394 143175394 C T TAS2R41 Silent p.I143I 0.11 TCGA-EE-A2MH-06 7 31862791 31862791 G A PDE1C Missense_Mutation p.P553L 0.18 tolerated(0.28) benign(0.002) TCGA-EE-A2MH-06 7 57528514 57528514 G A ZNF716 Missense_Mutation p.G116E 0.22 tolerated(1) benign(0.027) TCGA-EE-A2MH-06 7 7410438 7410438 G A COL28A1 Missense_Mutation p.S995L 0.17 tolerated(0.35) benign(0.004) TCGA-EE-A2MH-06 7 92098748 92098748 T C ERVW-1 Silent p.K316K 0.16 TCGA-EE-A2MH-06 8 100847802 100847802 C T VPS13B Missense_Mutation p.P3285S 0.14 tolerated(0.12) possibly_damaging(0.641) TCGA-EE-A2MH-06 8 104922734 104922734 G A RIMS2 Intron 0.45 TCGA-EE-A2MH-06 8 110467013 110467013 G A PKHD1L1 Missense_Mutation p.R2269Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MH-06 8 143763499 143763500 - G PSCA Frame_Shift_Ins p.A99Gfs*59 0.09 TCGA-EE-A2MH-06 8 23429209 23429209 C T SLC25A37 Silent p.F286F 0.14 TCGA-EE-A2MH-06 8 37693122 37693122 C T GPR124 Silent p.S628S 0.08 TCGA-EE-A2MH-06 8 52469450 52469450 G C PXDNL Missense_Mutation p.I110M 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 8 56715072 56715072 C T TGS1 Missense_Mutation p.P636S 0.20 tolerated(0.13) benign(0.04) TCGA-EE-A2MH-06 8 57353905 57353905 C T PENK Missense_Mutation p.D244N 0.19 tolerated(0.11) benign(0.052) TCGA-EE-A2MH-06 8 67578462 67578462 C T VCPIP1 Silent p.Q244Q 0.12 TCGA-EE-A2MH-06 8 73848532 73848532 C T KCNB2 Silent p.L314L 0.70 TCGA-EE-A2MH-06 8 98735188 98735188 C T MTDH Nonsense_Mutation p.Q535* 0.76 TCGA-EE-A2MH-06 9 140409851 140409851 G A PNPLA7 Missense_Mutation p.P402L 0.23 tolerated(0.7) benign(0.06) TCGA-EE-A2MH-06 9 72915040 72915040 C T SMC5 Missense_Mutation p.T463M 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MH-06 9 8521384 8521384 C T PTPRD Missense_Mutation p.G285E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MH-06 X 107320636 107320636 A T VSIG1 3'UTR 0.50 TCGA-EE-A2MH-06 X 120007782 120007782 C T CT47B1 Missense_Mutation p.E290K 0.45 tolerated_low_confidence(0.51) unknown(0) TCGA-EE-A2MH-06 X 135453677 135453677 C T GPR112 Silent p.A2529A 0.34 TCGA-EE-A2MH-06 X 47498705 47498705 G A ELK1 Silent p.F81F 0.55 TCGA-EE-A2MH-06 X 53106032 53106032 C T GPR173 Missense_Mutation p.P77S 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2MH-06 X 7870112 7870112 G A PNPLA4 Missense_Mutation p.P183L 0.52 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MH-06 X 79282277 79282277 C T TBX22 Silent p.S236S 0.40 TCGA-EE-A2MI-06 10 103345144 103345144 G A POLL Missense_Mutation p.P168S 0.47 tolerated(0.31) benign(0.002) TCGA-EE-A2MI-06 10 105815664 105815664 C A COL17A1 Missense_Mutation p.K521N 0.24 unknown(0) TCGA-EE-A2MI-06 10 105974173 105974173 G A WDR96 Missense_Mutation p.S143L 0.33 tolerated(0.23) benign(0.014) TCGA-EE-A2MI-06 10 106924109 106924109 C T SORCS3 Missense_Mutation p.S594F 0.38 deleterious(0) probably_damaging(0.942) TCGA-EE-A2MI-06 10 115985945 115985945 C T TDRD1 Missense_Mutation p.P1049S 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MI-06 10 116064521 116064521 G A AFAP1L2 Missense_Mutation p.S414F 0.17 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 10 116361718 116361719 CC T ABLIM1 Frame_Shift_Del p.A83Pfs*57 0.34 TCGA-EE-A2MI-06 10 125530537 125530537 C T CPXM2 Missense_Mutation p.E333K 0.43 deleterious(0.04) benign(0.056) TCGA-EE-A2MI-06 10 128830008 128830008 C T DOCK1 Silent p.I552I 0.40 TCGA-EE-A2MI-06 10 15290723 15290723 G A FAM171A1 Silent p.P223P 0.29 TCGA-EE-A2MI-06 10 17083048 17083048 G T CUBN Missense_Mutation p.S1334Y 0.24 tolerated(0.08) probably_damaging(0.931) TCGA-EE-A2MI-06 10 24762670 24762670 A C KIAA1217 Missense_Mutation p.K454Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 10 25684905 25684905 C T GPR158 Silent p.F358F 0.50 TCGA-EE-A2MI-06 10 25755615 25755615 G A GPR158 Silent p.T457T 0.31 TCGA-EE-A2MI-06 10 28272855 28272855 C T ARMC4 Missense_Mutation p.E246K 0.36 deleterious(0) possibly_damaging(0.484) TCGA-EE-A2MI-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.26 tolerated(0.05) possibly_damaging(0.691) TCGA-EE-A2MI-06 10 30318466 30318466 C T KIAA1462 Missense_Mutation p.G204E 0.29 deleterious(0.01) possibly_damaging(0.906) TCGA-EE-A2MI-06 10 34759085 34759085 G A PARD3 Silent p.P170P 0.38 TCGA-EE-A2MI-06 10 37430968 37430968 G A ANKRD30A Silent p.R325R 0.36 TCGA-EE-A2MI-06 10 37430981 37430981 G A ANKRD30A Missense_Mutation p.E330K 0.35 tolerated(0.82) benign(0.064) TCGA-EE-A2MI-06 10 37508003 37508003 G A ANKRD30A Silent p.L1065L 0.22 TCGA-EE-A2MI-06 10 44871373 44871373 G C CXCL12 3'Flank 0.26 TCGA-EE-A2MI-06 10 49400783 49400783 C T FRMPD2 Missense_Mutation p.M703I 0.25 tolerated(0.22) benign(0.001) TCGA-EE-A2MI-06 10 50121466 50121466 G A LRRC18 Silent p.S245S 0.34 TCGA-EE-A2MI-06 10 50666971 50666971 A G ERCC6 Silent p.L1458L 0.24 TCGA-EE-A2MI-06 10 52601719 52601719 C T A1CF Missense_Mutation p.D98N 0.23 deleterious(0.02) possibly_damaging(0.627) TCGA-EE-A2MI-06 10 55582031 55582031 G A PCDH15 Missense_Mutation p.P1821S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MI-06 10 68687255 68687255 G A LRRTM3 Missense_Mutation p.R194Q 0.28 tolerated(0.1) probably_damaging(0.995) TCGA-EE-A2MI-06 10 71655329 71655329 C T COL13A1 Silent p.H218H 0.30 TCGA-EE-A2MI-06 10 95791437 95791437 G A PLCE1 Missense_Mutation p.D212N 0.31 deleterious_low_confidence(0.02) benign(0.01) TCGA-EE-A2MI-06 10 96829107 96829107 G A CYP2C8 Missense_Mutation p.S18L 0.45 tolerated(0.26) benign(0.049) TCGA-EE-A2MI-06 11 102565806 102565806 C T MMP27 Missense_Mutation p.D309N 0.22 tolerated(0.35) benign(0.132) TCGA-EE-A2MI-06 11 102824925 102824925 G A MMP13 Silent p.A199A 0.17 TCGA-EE-A2MI-06 11 113700029 113700029 G A USP28 Missense_Mutation p.P317S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 11 114182969 114182969 C T NNMT Missense_Mutation p.P189S 0.23 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MI-06 11 116707761 116707761 G A APOA1 Silent p.D52D 0.31 TCGA-EE-A2MI-06 11 117776419 117776419 C T TMPRSS13 Missense_Mutation p.G439R 0.36 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2MI-06 11 117779493 117779493 C T TMPRSS13 Silent p.R372R 0.32 TCGA-EE-A2MI-06 11 119182038 119182038 C A MCAM Missense_Mutation p.A501S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 11 11919184 11919184 G A USP47 Silent p.L111L 0.30 TCGA-EE-A2MI-06 11 120745931 120745931 C T GRIK4 Silent p.F381F 0.32 TCGA-EE-A2MI-06 11 123778024 123778024 G A OR8D4 Missense_Mutation p.E296K 0.34 deleterious(0.01) benign(0.345) TCGA-EE-A2MI-06 11 123814015 123814015 G A OR6T1 Silent p.F177F 0.45 TCGA-EE-A2MI-06 11 124189926 124189926 G A OR8D2 Silent p.Y56Y 0.33 TCGA-EE-A2MI-06 11 124266627 124266627 G A OR8B3 Silent p.I207I 0.25 TCGA-EE-A2MI-06 11 124310337 124310337 G A OR8B8 Silent p.F215F 0.25 TCGA-EE-A2MI-06 11 128781298 128781298 G A KCNJ5 Missense_Mutation p.A44T 0.35 tolerated(0.31) benign(0.002) TCGA-EE-A2MI-06 11 128786396 128786396 T C KCNJ5 Missense_Mutation p.Y344H 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MI-06 11 133790170 133790170 G A IGSF9B Silent p.P1150P 0.32 TCGA-EE-A2MI-06 11 133790338 133790338 G A IGSF9B Silent p.I1094I 0.38 TCGA-EE-A2MI-06 11 133807341 133807341 T C IGSF9B Silent p.R203R 0.21 TCGA-EE-A2MI-06 11 134253818 134253818 C T B3GAT1 Missense_Mutation p.R126Q 0.33 tolerated(0.06) possibly_damaging(0.513) TCGA-EE-A2MI-06 11 13514157 13514157 G A PTH Missense_Mutation p.S48L 0.40 tolerated(0.21) benign(0.041) TCGA-EE-A2MI-06 11 18231632 18231632 G A RP11-113D6.10 Missense_Mutation p.E140K 0.38 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A2MI-06 11 18252952 18252952 C T SAA4 3'UTR 0.20 TCGA-EE-A2MI-06 11 18754168 18754168 C T PTPN5 Missense_Mutation p.D434N 0.29 tolerated(0.36) possibly_damaging(0.891) TCGA-EE-A2MI-06 11 19968009 19968009 T G NAV2 Missense_Mutation p.L760V 0.16 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MI-06 11 2161916 2161916 G A IGF2 Intron 0.46 TCGA-EE-A2MI-06 11 24936055 24936055 C T LUZP2 Missense_Mutation p.R165C 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 11 26669253 26669253 C T ANO3 Intron 0.28 TCGA-EE-A2MI-06 11 32705056 32705056 G A CCDC73 Intron 0.34 TCGA-EE-A2MI-06 11 420587 420587 G A ANO9 Silent p.F554F 0.29 TCGA-EE-A2MI-06 11 43364037 43364037 C T API5 Missense_Mutation p.R518C 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MI-06 11 45671428 45671428 G A CHST1 Missense_Mutation p.T349I 0.30 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MI-06 11 45945705 45945705 G A GYLTL1B Silent p.R123R 0.40 TCGA-EE-A2MI-06 11 4661821 4661821 C T OR51D1 Silent p.P267P 0.36 TCGA-EE-A2MI-06 11 46800070 46800070 C T CKAP5 Missense_Mutation p.G838E 0.40 tolerated(0.67) benign(0.003) TCGA-EE-A2MI-06 11 4703151 4703151 C T OR51E2 Missense_Mutation p.G264E 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 11 47681650 47681650 C T AGBL2 3'UTR 0.38 TCGA-EE-A2MI-06 11 47744803 47744803 G A FNBP4 Missense_Mutation p.L844F 0.36 tolerated(0.09) benign(0.179) TCGA-EE-A2MI-06 11 48267098 48267098 C T OR4X2 Missense_Mutation p.S148F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 11 48267238 48267238 G A OR4X2 Missense_Mutation p.G195R 0.30 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MI-06 11 49831758 49831758 C T RP11-707M1.1 RNA 0.26 TCGA-EE-A2MI-06 11 49974138 49974138 C T OR4C13 Missense_Mutation p.S55F 0.31 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-EE-A2MI-06 11 51411976 51411976 G A OR4A5 Silent p.F140F 0.36 TCGA-EE-A2MI-06 11 51515548 51515548 C T OR4C46 Silent p.A89A 0.26 TCGA-EE-A2MI-06 11 51515764 51515764 C T OR4C46 Silent p.I161I 0.36 TCGA-EE-A2MI-06 11 5411136 5411136 C T OR51M1 Missense_Mutation p.P170S 0.27 deleterious(0) probably_damaging(0.918) TCGA-EE-A2MI-06 11 5462528 5462528 G A OR51I1 Silent p.L73L 0.46 TCGA-EE-A2MI-06 11 5462652 5462652 C T OR51I1 Silent p.L31L 0.25 TCGA-EE-A2MI-06 11 55038490 55038490 C T TRIM48 3'UTR 0.25 TCGA-EE-A2MI-06 11 55065005 55065005 C T TRIM51HP RNA 0.21 TCGA-EE-A2MI-06 11 55111335 55111335 T C OR4A16 Missense_Mutation p.L220P 0.27 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-EE-A2MI-06 11 55371798 55371798 C T OR4C11 Missense_Mutation p.D18N 0.55 tolerated(0.44) benign(0.029) TCGA-EE-A2MI-06 11 55541018 55541018 C T OR5D13 Silent p.F35F 0.34 TCGA-EE-A2MI-06 11 57088096 57088096 G A TNKS1BP1 Missense_Mutation p.P62L 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 11 5776591 5776591 G A OR52N4 Silent p.L207L 0.35 TCGA-EE-A2MI-06 11 57947813 57947813 C T OR9Q1 Silent p.A299A 0.27 TCGA-EE-A2MI-06 11 58034336 58034336 G A OR10W1 3'UTR 0.25 TCGA-EE-A2MI-06 11 58711032 58711032 G A GLYATL1 Missense_Mutation p.G14E 0.39 tolerated_low_confidence(0.66) benign(0) TCGA-EE-A2MI-06 11 5906188 5906188 C T OR52E4 Silent p.I222I 0.25 TCGA-EE-A2MI-06 11 59282701 59282701 C T OR4D9 Missense_Mutation p.L106F 0.26 tolerated(1) benign(0.02) TCGA-EE-A2MI-06 11 59861027 59861027 C T MS4A2 Missense_Mutation p.S178F 0.24 tolerated(0.08) possibly_damaging(0.472) TCGA-EE-A2MI-06 11 63065028 63065028 C T SLC22A10 Intron 0.20 TCGA-EE-A2MI-06 11 63670575 63670575 C T MARK2 Missense_Mutation p.P487S 0.29 tolerated(0.43) probably_damaging(0.999) TCGA-EE-A2MI-06 11 63681886 63681886 C T RCOR2 Intron 0.26 TCGA-EE-A2MI-06 11 64359004 64359004 C T SLC22A12 5'UTR 0.32 TCGA-EE-A2MI-06 11 64453402 64453402 C T NRXN2 Missense_Mutation p.A290T 0.29 deleterious(0) benign(0.001) TCGA-EE-A2MI-06 11 6472639 6472639 G A TRIM3 Silent p.F521F 0.32 TCGA-EE-A2MI-06 11 6500164 6500164 C T ARFIP2 Missense_Mutation p.R114Q 0.24 deleterious(0.03) probably_damaging(0.909) TCGA-EE-A2MI-06 11 65367008 65367008 G A MAP3K11 Missense_Mutation p.T688I 0.36 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A2MI-06 11 66191166 66191166 C T NPAS4 Missense_Mutation p.A309V 0.20 deleterious(0.02) benign(0.031) TCGA-EE-A2MI-06 11 66278144 66278144 C T BBS1 Missense_Mutation p.S5F 0.42 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2MI-06 11 66359889 66359889 G A CCDC87 Missense_Mutation p.P200S 0.28 tolerated(0.19) benign(0.159) TCGA-EE-A2MI-06 11 67832028 67832028 G A CHKA Missense_Mutation p.S399F 0.27 tolerated(0.09) benign(0.001) TCGA-EE-A2MI-06 11 6867102 6867102 C T OR10A5 Silent p.F63F 0.29 TCGA-EE-A2MI-06 11 6942260 6942260 G A OR2D3 Missense_Mutation p.G10S 0.20 tolerated(1) benign(0.003) TCGA-EE-A2MI-06 11 7021860 7021860 G A ZNF214 Missense_Mutation p.H352Y 0.15 deleterious(0) possibly_damaging(0.661) TCGA-EE-A2MI-06 11 71185492 71185492 C T NADSYN1 Silent p.L240L 0.27 TCGA-EE-A2MI-06 11 71906446 71906446 C T FOLR1 Silent p.F100F 0.25 TCGA-EE-A2MI-06 11 71942105 71942105 G A INPPL1 Missense_Mutation p.E457K 0.26 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MI-06 11 71944756 71944756 T C INPPL1 Missense_Mutation p.V727A 0.24 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A2MI-06 11 73712518 73712518 G A UCP3 Missense_Mutation p.T293I 0.21 deleterious(0.03) possibly_damaging(0.825) TCGA-EE-A2MI-06 11 73990439 73990439 C T P4HA3 Missense_Mutation p.S390N 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 11 74015355 74015355 C T P4HA3 Silent p.R101R 0.40 TCGA-EE-A2MI-06 11 75115202 75115202 T C RPS3 Silent p.P179P 0.46 TCGA-EE-A2MI-06 11 78413036 78413036 G A TENM4 Missense_Mutation p.S1541F 0.22 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2MI-06 11 7984979 7984979 C T NLRP10 Missense_Mutation p.E22K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 11 8008845 8008845 C T EIF3F 5'UTR 0.13 TCGA-EE-A2MI-06 11 86017395 86017395 C T C11orf73 Missense_Mutation p.P47S 0.23 tolerated(0.06) probably_damaging(0.991) TCGA-EE-A2MI-06 11 86126160 86126160 C T CCDC81 Missense_Mutation p.P499L 0.33 deleterious(0.03) possibly_damaging(0.523) TCGA-EE-A2MI-06 11 87032329 87032329 C T TMEM135 Missense_Mutation p.P444L 0.19 tolerated(0.48) possibly_damaging(0.614) TCGA-EE-A2MI-06 11 92085367 92085367 C T FAT3 Missense_Mutation p.S30F 0.28 benign(0.001) TCGA-EE-A2MI-06 11 93148173 93148173 C T CCDC67 Missense_Mutation p.H511Y 0.30 tolerated(0.08) benign(0.074) TCGA-EE-A2MI-06 11 94204874 94204874 G A MRE11A Silent p.F237F 0.41 TCGA-EE-A2MI-06 11 94732116 94732116 G A KDM4D 3'UTR 0.31 TCGA-EE-A2MI-06 12 101295517 101295517 C T ANO4 5'UTR 0.32 TCGA-EE-A2MI-06 12 101493365 101493365 G A ANO4 Silent p.Q637Q 0.43 TCGA-EE-A2MI-06 12 104048356 104048356 C T STAB2 Silent p.L477L 0.19 TCGA-EE-A2MI-06 12 104102255 104102255 C T STAB2 Missense_Mutation p.P1410L 0.30 tolerated(0.59) benign(0.004) TCGA-EE-A2MI-06 12 104155081 104155081 G A STAB2 Missense_Mutation p.E2418K 0.29 tolerated(0.16) benign(0.068) TCGA-EE-A2MI-06 12 10532306 10532306 G A KLRK1 Silent p.F78F 0.09 TCGA-EE-A2MI-06 12 106633345 106633345 G A CKAP4 Silent p.S422S 0.15 TCGA-EE-A2MI-06 12 106633346 106633346 G A CKAP4 Missense_Mutation p.S422F 0.15 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A2MI-06 12 10783863 10783863 C T STYK1 Missense_Mutation p.G78R 0.30 tolerated(0.25) benign(0.06) TCGA-EE-A2MI-06 12 10959158 10959158 G A TAS2R8 Missense_Mutation p.S141F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 12 109826641 109826641 C T MYO1H Missense_Mutation p.L40F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 12 110246249 110246249 G A TRPV4 Silent p.A137A 0.20 TCGA-EE-A2MI-06 12 113327831 113327831 G A RPH3A Missense_Mutation p.M522I 0.27 tolerated(0.22) benign(0.001) TCGA-EE-A2MI-06 12 113865885 113865885 C T SDSL Missense_Mutation p.P33L 0.33 tolerated(0.18) benign(0.198) TCGA-EE-A2MI-06 12 11462321 11462321 G A PRB4 Missense_Mutation p.S28F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MI-06 12 11506747 11506747 G A PRB1 Missense_Mutation p.P97L 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MI-06 12 117914313 117914313 C T KSR2 Silent p.E846E 0.22 TCGA-EE-A2MI-06 12 120196473 120196473 G A CIT Missense_Mutation p.S818F 0.25 deleterious(0.02) possibly_damaging(0.61) TCGA-EE-A2MI-06 12 123498443 123498443 G A PITPNM2 Silent p.S75S 0.30 TCGA-EE-A2MI-06 12 123498448 123498448 G A PITPNM2 Missense_Mutation p.R74C 0.31 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A2MI-06 12 124303737 124303737 G A DNAH10 Missense_Mutation p.E1196K 0.29 benign(0.002) TCGA-EE-A2MI-06 12 124341748 124341748 T C DNAH10 Missense_Mutation p.V2077A 0.45 possibly_damaging(0.677) TCGA-EE-A2MI-06 12 2027448 2027448 G A CACNA2D4 Silent p.S64S 0.20 TCGA-EE-A2MI-06 12 20832983 20832983 G A PDE3A Silent p.R1068R 0.25 TCGA-EE-A2MI-06 12 21196347 21196347 C T SLCO1B7 Silent p.S222S 0.28 TCGA-EE-A2MI-06 12 21472416 21472416 C T SLCO1A2 Intron 0.31 TCGA-EE-A2MI-06 12 2676817 2676817 C T CACNA1C Silent p.F584F 0.29 TCGA-EE-A2MI-06 12 29423355 29423355 C T FAR2 5'UTR 0.33 TCGA-EE-A2MI-06 12 29524572 29524572 G A ERGIC2 5'UTR 0.19 TCGA-EE-A2MI-06 12 29617510 29617510 G A OVCH1 Silent p.L685L 0.24 TCGA-EE-A2MI-06 12 32908665 32908665 G A YARS2 Silent p.F48F 0.31 TCGA-EE-A2MI-06 12 4479772 4479772 G A FGF23 Missense_Mutation p.P165S 0.26 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A2MI-06 12 45429837 45429837 G A DBX2 Missense_Mutation p.S155F 0.35 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A2MI-06 12 47186821 47186821 C T SLC38A4 Missense_Mutation p.E12K 0.23 tolerated(0.57) benign(0.001) TCGA-EE-A2MI-06 12 4870183 4870183 G A GALNT8 Silent p.E411E 0.38 TCGA-EE-A2MI-06 12 4920731 4920731 G A KCNA6 Silent p.R508R 0.32 TCGA-EE-A2MI-06 12 49425089 49425089 G A KMT2D Missense_Mutation p.L4467F 0.34 unknown(0) TCGA-EE-A2MI-06 12 50156716 50156716 C T TMBIM6 3'UTR 0.42 TCGA-EE-A2MI-06 12 50501442 50501442 G A GPD1 Missense_Mutation p.M235I 0.25 tolerated(0.16) benign(0.394) TCGA-EE-A2MI-06 12 51252788 51252788 G A TMPRSS12 Missense_Mutation p.G202R 0.21 tolerated(0.28) benign(0.013) TCGA-EE-A2MI-06 12 51695836 51695836 C T BIN2 Missense_Mutation p.E126K 0.29 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2MI-06 12 52056748 52056748 G A SCN8A Silent p.E49E 0.28 TCGA-EE-A2MI-06 12 52408956 52408956 C T GRASP Silent p.S387S 0.14 TCGA-EE-A2MI-06 12 52715014 52715014 G A KRT83 Missense_Mutation p.P36S 0.27 tolerated(0.23) benign(0.045) TCGA-EE-A2MI-06 12 52799831 52799831 G A KRT82 Silent p.G77G 0.33 TCGA-EE-A2MI-06 12 52960720 52960720 C T KRT74 3'UTR 0.29 TCGA-EE-A2MI-06 12 53005009 53005009 C T KRT73 Silent p.E363E 0.35 TCGA-EE-A2MI-06 12 53070892 53070892 T A KRT1 Missense_Mutation p.N402I 0.28 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MI-06 12 53169379 53169379 A T KRT76 Missense_Mutation p.F203Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MI-06 12 53663155 53663155 G A ESPL1 Silent p.V143V 0.33 TCGA-EE-A2MI-06 12 53879933 53879933 G A MAP3K12 Missense_Mutation p.P243L 0.34 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MI-06 12 55725759 55725759 A G OR6C3 Missense_Mutation p.N92S 0.21 tolerated_low_confidence(0.07) benign(0.22) TCGA-EE-A2MI-06 12 55725784 55725784 C T OR6C3 Silent p.F100F 0.31 TCGA-EE-A2MI-06 12 55726161 55726161 C T OR6C3 Missense_Mutation p.P226L 0.30 deleterious_low_confidence(0.01) benign(0.26) TCGA-EE-A2MI-06 12 55759618 55759618 C T OR6C75 Missense_Mutation p.H242Y 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MI-06 12 55759740 55759740 C T OR6C75 Silent p.L282L 0.21 TCGA-EE-A2MI-06 12 56717878 56717878 C T PAN2 Missense_Mutation p.V674M 0.33 tolerated(0.13) probably_damaging(0.93) TCGA-EE-A2MI-06 12 57110418 57110418 G A NACA Intron 0.28 TCGA-EE-A2MI-06 12 57348915 57348915 G A RDH16 Missense_Mutation p.S116F 0.26 tolerated(0.52) benign(0.013) TCGA-EE-A2MI-06 12 57865553 57865553 C T GLI1 Silent p.S1010S 0.29 TCGA-EE-A2MI-06 12 5915235 5915235 C T ANO2 Missense_Mutation p.D321N 0.18 tolerated(0.12) possibly_damaging(0.894) TCGA-EE-A2MI-06 12 7047862 7047862 C T ATN1 Silent p.D912D 0.24 TCGA-EE-A2MI-06 12 7086600 7086600 T A LPCAT3 Missense_Mutation p.T426S 0.30 tolerated(0.4) benign(0.088) TCGA-EE-A2MI-06 12 70960357 70960357 G A PTPRB Silent p.I1254I 0.24 TCGA-EE-A2MI-06 12 71003006 71003006 G A PTPRB Silent p.L274L 0.24 TCGA-EE-A2MI-06 12 71029530 71029530 C T PTPRB Silent p.R124R 0.22 TCGA-EE-A2MI-06 12 71551475 71551475 G A TSPAN8 5'UTR 0.31 TCGA-EE-A2MI-06 12 7288818 7288818 C T CLSTN3 Silent p.I253I 0.35 TCGA-EE-A2MI-06 12 73012798 73012798 G A TRHDE Missense_Mutation p.E772K 0.17 tolerated(0.06) possibly_damaging(0.63) TCGA-EE-A2MI-06 12 75442073 75442073 C T KCNC2 Missense_Mutation p.G547E 0.36 tolerated(0.07) benign(0.045) TCGA-EE-A2MI-06 12 7559373 7559373 C T CD163L1 Missense_Mutation p.G281E 0.24 tolerated(0.22) probably_damaging(0.993) TCGA-EE-A2MI-06 12 81111175 81111175 G A MYF5 Silent p.T111T 0.27 TCGA-EE-A2MI-06 12 81777804 81777804 C T PPFIA2 Missense_Mutation p.E328K 0.14 deleterious(0.02) probably_damaging(0.939) TCGA-EE-A2MI-06 12 88376914 88376914 T C C12orf50 Silent p.S395S 0.23 TCGA-EE-A2MI-06 12 97051840 97051840 G A C12orf55 Missense_Mutation p.E1761K 0.21 deleterious(0) benign(0.33) TCGA-EE-A2MI-06 12 97057625 97057625 C T C12orf55 Silent p.F1826F 0.12 TCGA-EE-A2MI-06 12 9760381 9760381 C T KLRB1 Missense_Mutation p.E19K 0.32 tolerated(1) benign(0.006) TCGA-EE-A2MI-06 13 110827028 110827028 G A COL4A1 Silent p.I1089I 0.32 TCGA-EE-A2MI-06 13 23904967 23904967 C T SACS Missense_Mutation p.E4350K 0.37 probably_damaging(0.98) TCGA-EE-A2MI-06 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.11 tolerated(0.11) benign(0.007) TCGA-EE-A2MI-06 13 25416274 25416274 G A RNF17 Missense_Mutation p.E860K 0.43 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2MI-06 13 28877373 28877373 C T FLT1 Silent p.R1316R 0.35 TCGA-EE-A2MI-06 13 29599514 29599514 G A MTUS2 Missense_Mutation p.A237T 0.36 tolerated(0.65) benign(0.016) TCGA-EE-A2MI-06 13 33629241 33629241 G A KL Missense_Mutation p.G463D 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 13 33704280 33704280 C T STARD13 Silent p.R178R 0.31 TCGA-EE-A2MI-06 13 35733774 35733774 G A NBEA Missense_Mutation p.E1156K 0.23 tolerated_low_confidence(0.1) benign(0.036) TCGA-EE-A2MI-06 13 39587627 39587627 C T PROSER1 Missense_Mutation p.G588S 0.30 tolerated_low_confidence(0.7) benign(0.004) TCGA-EE-A2MI-06 13 39613751 39613751 C T NHLRC3 Silent p.F96F 0.33 TCGA-EE-A2MI-06 13 42189183 42189183 G A VWA8 Missense_Mutation p.S1550F 0.15 tolerated(0.06) benign(0.024) TCGA-EE-A2MI-06 13 42393512 42393512 G A VWA8 Missense_Mutation p.P571S 0.27 tolerated(0.06) benign(0.236) TCGA-EE-A2MI-06 13 47409312 47409312 C G HTR2A Missense_Mutation p.G359A 0.32 tolerated(0.51) benign(0.207) TCGA-EE-A2MI-06 13 49281442 49281442 G A CYSLTR2 Nonsense_Mutation p.W163* 0.25 TCGA-EE-A2MI-06 13 50306751 50306751 G A KPNA3 Nonsense_Mutation p.Q93* 0.32 TCGA-EE-A2MI-06 13 52373720 52373720 C A DHRS12 Missense_Mutation p.G47V 0.29 deleterious(0) possibly_damaging(0.812) TCGA-EE-A2MI-06 13 58299475 58299475 G A PCDH17 3'UTR 0.33 TCGA-EE-A2MI-06 13 78293711 78293711 C T SLAIN1 Missense_Mutation p.S60F 0.20 tolerated(0.14) unknown(0) TCGA-EE-A2MI-06 13 79191269 79191269 G A RNF219 Intron 0.36 TCGA-EE-A2MI-06 13 84454988 84454988 C T SLITRK1 Missense_Mutation p.D219N 0.24 deleterious(0) possibly_damaging(0.881) TCGA-EE-A2MI-06 13 95034789 95034789 G A GPC6 Missense_Mutation p.G425E 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MI-06 13 95092305 95092305 C T DCT Nonsense_Mutation p.W502* 0.28 TCGA-EE-A2MI-06 13 96274644 96274644 G A DZIP1 Missense_Mutation p.P355S 0.29 tolerated(0.07) benign(0.001) TCGA-EE-A2MI-06 14 100809692 100809692 G A WARS Missense_Mutation p.P287S 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MI-06 14 101520714 101520714 C T MIR382 RNA 0.25 TCGA-EE-A2MI-06 14 104472727 104472727 T C TDRD9 Missense_Mutation p.V572A 0.27 tolerated(0.07) possibly_damaging(0.803) TCGA-EE-A2MI-06 14 105221989 105221989 C T SIVA1 Silent p.F47F 0.26 TCGA-EE-A2MI-06 14 105419601 105419601 G A AHNAK2 Silent p.S729S 0.33 TCGA-EE-A2MI-06 14 106109549 106109549 C T IGHG2 Silent p.P324P 0.31 TCGA-EE-A2MI-06 14 106208017 106208017 C T IGHG1 Silent p.V262V 0.29 TCGA-EE-A2MI-06 14 106610536 106610536 C T IGHV3-15 Missense_Mutation p.G45E 0.25 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-EE-A2MI-06 14 106725293 106725293 A G IGHV3-23 Missense_Mutation p.F87L 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-EE-A2MI-06 14 106877922 106877922 G A IGHV4-39 Silent p.V24V 0.37 TCGA-EE-A2MI-06 14 106926618 106926618 G A IGHV3-43 Silent p.F9F 0.28 TCGA-EE-A2MI-06 14 107034960 107034960 G A IGHV5-51 Silent p.S40S 0.35 TCGA-EE-A2MI-06 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.33 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A2MI-06 14 20216441 20216441 C T OR4Q3 Silent p.P285P 0.29 TCGA-EE-A2MI-06 14 20216442 20216442 C T OR4Q3 Missense_Mutation p.L286F 0.29 deleterious(0.05) benign(0.025) TCGA-EE-A2MI-06 14 20248610 20248610 C T OR4M1 Silent p.I43I 0.32 TCGA-EE-A2MI-06 14 20344656 20344656 C T OR4K2 Missense_Mutation p.A77V 0.38 deleterious(0.01) possibly_damaging(0.78) TCGA-EE-A2MI-06 14 20404300 20404300 C T OR4K1 Missense_Mutation p.H159Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 14 20502263 20502263 C T OR4K13 Missense_Mutation p.G219R 0.36 deleterious(0.01) benign(0.003) TCGA-EE-A2MI-06 14 20612336 20612336 C T OR4N5 Silent p.L148L 0.32 TCGA-EE-A2MI-06 14 21790049 21790049 G A RPGRIP1 Missense_Mutation p.D550N 0.27 deleterious(0.02) benign(0.141) TCGA-EE-A2MI-06 14 21993173 21993173 C T SALL2 Missense_Mutation p.G230E 0.28 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MI-06 14 22192421 22192421 C T TRAV3 Missense_Mutation p.L66F 0.25 deleterious(0) possibly_damaging(0.846) TCGA-EE-A2MI-06 14 22392675 22392675 T C TRAV14DV4 Silent p.I66I 0.33 TCGA-EE-A2MI-06 14 22521083 22521083 G A TRAV21 Missense_Mutation p.G35E 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MI-06 14 23869930 23869930 G A MYH6 Silent p.F466F 0.26 TCGA-EE-A2MI-06 14 23938907 23938907 G A NGDN 5'UTR 0.21 TCGA-EE-A2MI-06 14 24525540 24525540 G A LRRC16B Missense_Mutation p.G268E 0.19 tolerated(0.08) benign(0.025) TCGA-EE-A2MI-06 14 36943057 36943057 C T SFTA3 3'UTR 0.14 TCGA-EE-A2MI-06 14 38273927 38273927 C T TTC6 Missense_Mutation p.H1358Y 0.41 tolerated(1) benign(0.088) TCGA-EE-A2MI-06 14 39644500 39644500 G A PNN Missense_Mutation p.R6K 0.25 tolerated(0.07) benign(0.122) TCGA-EE-A2MI-06 14 47566138 47566138 C T MDGA2 Missense_Mutation p.D372N 0.29 tolerated(0.17) benign(0.397) TCGA-EE-A2MI-06 14 51099023 51099023 A G ATL1 Missense_Mutation p.E548G 0.23 tolerated_low_confidence(0.18) benign(0.006) TCGA-EE-A2MI-06 14 51713810 51713810 T C TMX1 Silent p.H105H 0.43 TCGA-EE-A2MI-06 14 57268930 57268930 G A OTX2 Silent p.F139F 0.44 TCGA-EE-A2MI-06 14 58060780 58060780 C T SLC35F4 Missense_Mutation p.G92S 0.32 tolerated_low_confidence(0.45) benign(0.003) TCGA-EE-A2MI-06 14 59112095 59112095 C A DACT1 Missense_Mutation p.P252T 0.43 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 14 62551075 62551075 C T SYT16 Silent p.F532F 0.42 TCGA-EE-A2MI-06 14 63316401 63316401 C T KCNH5 Nonsense_Mutation p.W513* 0.22 TCGA-EE-A2MI-06 14 64989825 64989825 C T ZBTB1 Nonsense_Mutation p.R535* 0.32 TCGA-EE-A2MI-06 14 66028473 66028473 C T FUT8 Silent p.A64A 0.30 TCGA-EE-A2MI-06 14 69704344 69704344 G A EXD2 Missense_Mutation p.D449N 0.10 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MI-06 14 70633621 70633621 G A SLC8A3 Missense_Mutation p.P507S 0.29 tolerated(0.4) benign(0.001) TCGA-EE-A2MI-06 14 71216739 71216739 C T MAP3K9 Missense_Mutation p.G354D 0.18 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MI-06 14 72165736 72165736 C T SIPA1L1 Missense_Mutation p.S1138F 0.33 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MI-06 14 73640349 73640349 C T PSEN1 Silent p.I138I 0.32 TCGA-EE-A2MI-06 14 75139651 75139651 G A AREL1 Silent p.G435G 0.43 TCGA-EE-A2MI-06 14 75515207 75515207 G C MLH3 Silent p.S384S 0.23 TCGA-EE-A2MI-06 14 76129474 76129474 A C TTLL5 5'UTR 0.18 TCGA-EE-A2MI-06 14 79454459 79454459 T C NRXN3 Silent p.S706S 0.41 TCGA-EE-A2MI-06 14 88693803 88693803 G A KCNK10 Silent p.L199L 0.29 TCGA-EE-A2MI-06 14 88693840 88693840 A G KCNK10 Missense_Mutation p.I187T 0.28 deleterious(0) possibly_damaging(0.825) TCGA-EE-A2MI-06 14 91805701 91805701 G A CCDC88C Missense_Mutation p.L244F 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2MI-06 14 92136196 92136196 G A CATSPERB Missense_Mutation p.H417Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 14 92189534 92189534 C T CATSPERB Splice_Site p.X57_splice 0.24 TCGA-EE-A2MI-06 14 93178215 93178215 C T LGMN Nonsense_Mutation p.W232* 0.39 TCGA-EE-A2MI-06 14 93178216 93178216 C T LGMN Nonsense_Mutation p.W232* 0.38 TCGA-EE-A2MI-06 14 93720013 93720013 G A BTBD7 Missense_Mutation p.P578S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 14 94203587 94203587 C T PRIMA1 Missense_Mutation p.R120K 0.17 deleterious(0) possibly_damaging(0.742) TCGA-EE-A2MI-06 14 94420818 94420818 G A ASB2 Missense_Mutation p.P108L 0.24 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MI-06 14 94725701 94725701 G A PPP4R4 Missense_Mutation p.E708K 0.38 deleterious(0.03) probably_damaging(0.915) TCGA-EE-A2MI-06 14 94754734 94754734 C T SERPINA10 Missense_Mutation p.G294E 0.32 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MI-06 14 94942575 94942575 C T SERPINA9 5'UTR 0.25 TCGA-EE-A2MI-06 14 96129863 96129863 G A TCL6 RNA 0.34 TCGA-EE-A2MI-06 14 96703495 96703495 C T BDKRB2 Silent p.S17S 0.39 TCGA-EE-A2MI-06 14 99640494 99640494 C T BCL11B Silent p.R893R 0.27 TCGA-EE-A2MI-06 15 100332964 100332964 G A AC090825.1 3'Flank 0.15 TCGA-EE-A2MI-06 15 102312120 102312120 C T RN7SL209P 3'Flank 0.17 TCGA-EE-A2MI-06 15 20490586 20490586 C T CHEK2P2 Intron 0.07 TCGA-EE-A2MI-06 15 20588503 20588503 G A HERC2P3 RNA 0.11 TCGA-EE-A2MI-06 15 20642628 20642628 C T HERC2P3 RNA 0.20 TCGA-EE-A2MI-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.13 deleterious(0.01) benign(0.037) TCGA-EE-A2MI-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.17 tolerated(0.26) probably_damaging(0.991) TCGA-EE-A2MI-06 15 24922858 24922858 G A NPAP1 Missense_Mutation p.G615E 0.25 tolerated(0.25) possibly_damaging(0.898) TCGA-EE-A2MI-06 15 25425679 25425679 G A SNORD115-6 RNA 0.24 TCGA-EE-A2MI-06 15 25438546 25438546 G A SNORD115-11 3'Flank 0.30 TCGA-EE-A2MI-06 15 28414666 28414666 G A HERC2 Missense_Mutation p.S3398L 0.52 benign(0.024) TCGA-EE-A2MI-06 15 34040321 34040321 G A RYR3 Missense_Mutation p.E2666K 0.55 probably_damaging(0.941) TCGA-EE-A2MI-06 15 41854896 41854896 C T TYRO3 Missense_Mutation p.P187L 0.29 deleterious(0.03) benign(0.412) TCGA-EE-A2MI-06 15 45399629 45399629 C T DUOX2 Missense_Mutation p.R536Q 0.30 deleterious(0.03) benign(0.058) TCGA-EE-A2MI-06 15 54305959 54305959 G A UNC13C Missense_Mutation p.E287K 0.46 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2MI-06 15 60758794 60758794 T C NARG2 Missense_Mutation p.E176G 0.29 deleterious(0) possibly_damaging(0.848) TCGA-EE-A2MI-06 15 64968228 64968228 C T ZNF609 Silent p.L1059L 0.33 TCGA-EE-A2MI-06 15 74032662 74032662 A T C15orf59 Missense_Mutation p.S160T 0.37 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2MI-06 15 74628221 74628221 C T CCDC33 Intron 0.21 TCGA-EE-A2MI-06 15 75949417 75949417 C T SNX33 Missense_Mutation p.A529V 0.37 deleterious(0) benign(0.389) TCGA-EE-A2MI-06 15 76075529 76075529 G A RN7SL319P 5'Flank 0.30 TCGA-EE-A2MI-06 15 83350185 83350185 G T AP3B2 Missense_Mutation p.P170T 0.09 deleterious(0.01) benign(0.262) TCGA-EE-A2MI-06 15 84651847 84651847 G A ADAMTSL3 Missense_Mutation p.G1156E 0.48 tolerated(0.87) benign(0.005) TCGA-EE-A2MI-06 15 86697687 86697687 G A AGBL1 Missense_Mutation p.E51K 0.22 tolerated(0.91) benign(0.036) TCGA-EE-A2MI-06 15 89398533 89398533 C T ACAN Missense_Mutation p.S906F 0.14 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MI-06 15 92981769 92981769 C T ST8SIA2 Silent p.I159I 0.45 TCGA-EE-A2MI-06 16 1144728 1144728 G A C1QTNF8 Silent p.I65I 0.27 TCGA-EE-A2MI-06 16 11864800 11864800 G A ZC3H7A Missense_Mutation p.S316F 0.29 tolerated(0.05) benign(0.188) TCGA-EE-A2MI-06 16 14306259 14306259 G A MKL2 Missense_Mutation p.R90Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 16 16267236 16267236 C T ABCC6 Missense_Mutation p.D898N 0.15 tolerated(0.14) benign(0.002) TCGA-EE-A2MI-06 16 16267237 16267237 C T ABCC6 Silent p.K897K 0.15 TCGA-EE-A2MI-06 16 18853713 18853713 T C SMG1 Missense_Mutation p.I2095V 0.41 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A2MI-06 16 20043675 20043675 G A GPR139 Silent p.V148V 0.28 TCGA-EE-A2MI-06 16 2052210 2052210 C T ZNF598 Missense_Mutation p.E298K 0.33 possibly_damaging(0.459) TCGA-EE-A2MI-06 16 20565132 20565132 G A ACSM2B Missense_Mutation p.S236L 0.31 tolerated(0.12) possibly_damaging(0.734) TCGA-EE-A2MI-06 16 20673121 20673121 G A ACSM1 Silent p.F329F 0.27 TCGA-EE-A2MI-06 16 20857542 20857542 G A AC004381.6 Splice_Site p.X709_splice 0.29 TCGA-EE-A2MI-06 16 21211163 21211163 G A ZP2 Silent p.F577F 0.25 TCGA-EE-A2MI-06 16 2153848 2153848 G A PKD1 Missense_Mutation p.S2737L 0.29 benign(0.003) TCGA-EE-A2MI-06 16 2376160 2376160 T A ABCA3 Missense_Mutation p.Y57F 0.38 tolerated(0.26) benign(0.042) TCGA-EE-A2MI-06 16 27221559 27221559 G A KDM8 Missense_Mutation p.E77K 0.43 tolerated(0.12) benign(0.079) TCGA-EE-A2MI-06 16 28509501 28509501 C T APOBR Missense_Mutation p.R1019W 0.64 deleterious(0.04) unknown(0) TCGA-EE-A2MI-06 16 28603627 28603627 G A SULT1A2 Silent p.R244R 0.26 TCGA-EE-A2MI-06 16 3064068 3064068 G A CLDN9 3'UTR 0.23 TCGA-EE-A2MI-06 16 32077634 32077634 G A IGHV3OR16-9 Missense_Mutation p.M83I 0.15 deleterious_low_confidence(0.01) benign(0.308) TCGA-EE-A2MI-06 16 321421 321421 C T RGS11 Silent p.V242V 0.24 TCGA-EE-A2MI-06 16 3293258 3293258 G A MEFV Silent p.F743F 0.24 TCGA-EE-A2MI-06 16 3299736 3299736 C T MEFV Missense_Mutation p.E319K 0.23 tolerated(0.23) benign(0.188) TCGA-EE-A2MI-06 16 3406086 3406086 C T OR2C1 Missense_Mutation p.S49F 0.25 deleterious(0.01) benign(0.016) TCGA-EE-A2MI-06 16 3454464 3454464 G A ZNF174 Silent p.E147E 0.27 TCGA-EE-A2MI-06 16 3543838 3543838 C T C16orf90 3'UTR 0.30 TCGA-EE-A2MI-06 16 3900838 3900838 T A CREBBP Silent p.I86I 0.32 TCGA-EE-A2MI-06 16 48175116 48175116 C T ABCC12 Missense_Mutation p.V142M 0.27 tolerated(0.46) benign(0.016) TCGA-EE-A2MI-06 16 51170955 51170955 G A SALL1 3'UTR 0.33 TCGA-EE-A2MI-06 16 51175809 51175809 C T SALL1 Silent p.V108V 0.30 TCGA-EE-A2MI-06 16 57060009 57060009 C T NLRC5 Missense_Mutation p.S385L 0.26 tolerated(0.65) benign(0) TCGA-EE-A2MI-06 16 57546547 57546547 G A CCDC102A 3'UTR 0.30 TCGA-EE-A2MI-06 16 57931709 57931709 C T CNGB1 Missense_Mutation p.G1029E 0.15 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MI-06 16 58031661 58031661 G A ZNF319 Missense_Mutation p.A170V 0.62 tolerated(0.16) benign(0.067) TCGA-EE-A2MI-06 16 66919126 66919126 C G PDP2 Missense_Mutation p.N313K 0.61 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MI-06 16 67000697 67000697 G A CES3 Missense_Mutation p.E331K 0.13 tolerated(0.06) possibly_damaging(0.673) TCGA-EE-A2MI-06 16 68941384 68941384 C T TANGO6 Missense_Mutation p.S569F 0.38 deleterious(0) benign(0.41) TCGA-EE-A2MI-06 16 70913593 70913593 G A HYDIN Missense_Mutation p.H3428Y 0.70 possibly_damaging(0.607) TCGA-EE-A2MI-06 16 71098709 71098709 C T HYDIN Missense_Mutation p.E704K 0.44 probably_damaging(0.922) TCGA-EE-A2MI-06 16 72184698 72184698 G A PMFBP1 Missense_Mutation p.H149Y 0.08 deleterious(0.04) possibly_damaging(0.736) TCGA-EE-A2MI-06 16 81303970 81303970 C T BCMO1 Silent p.L350L 0.38 TCGA-EE-A2MI-06 16 84482186 84482186 C T ATP2C2 Silent p.I517I 0.49 TCGA-EE-A2MI-06 16 8732970 8732970 C T METTL22 Silent p.S241S 0.33 TCGA-EE-A2MI-06 16 89627895 89627895 C T RPL13 Intron 0.30 TCGA-EE-A2MI-06 16 8995974 8995974 G A USP7 Missense_Mutation p.A671V 0.27 tolerated(0.18) benign(0.002) TCGA-EE-A2MI-06 16 9858604 9858604 C T GRIN2A Missense_Mutation p.D933N 0.34 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MI-06 16 9858605 9858605 C T GRIN2A Missense_Mutation p.M932I 0.34 deleterious(0.04) benign(0.006) TCGA-EE-A2MI-06 17 1012282 1012282 G A ABR Intron 0.33 TCGA-EE-A2MI-06 17 10362577 10362577 G A MYH4 Silent p.L526L 0.29 TCGA-EE-A2MI-06 17 10429959 10429959 C T MYH2 Missense_Mutation p.E1382K 0.33 deleterious(0) benign(0.323) TCGA-EE-A2MI-06 17 10436665 10436665 C T MYH2 Missense_Mutation p.R793Q 0.30 tolerated(0.13) benign(0.439) TCGA-EE-A2MI-06 17 10447105 10447105 G A MYH2 Nonsense_Mutation p.Q222* 0.26 TCGA-EE-A2MI-06 17 12819328 12819328 G A ARHGAP44 Silent p.E129E 0.44 TCGA-EE-A2MI-06 17 1631646 1631646 C T WDR81 Silent p.P1131P 0.27 TCGA-EE-A2MI-06 17 17207002 17207002 G C NT5M Silent p.L46L 0.29 TCGA-EE-A2MI-06 17 18143908 18143908 C T LLGL1 Silent p.P741P 0.24 TCGA-EE-A2MI-06 17 1943834 1943834 C T DPH1 Silent p.S319S 0.29 TCGA-EE-A2MI-06 17 20805643 20805643 G A RP11-344E13.3 RNA 0.27 TCGA-EE-A2MI-06 17 27285069 27285069 A T SEZ6 Missense_Mutation p.V733E 0.30 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A2MI-06 17 27383203 27383203 C T PIPOX Silent p.F351F 0.25 TCGA-EE-A2MI-06 17 27998981 27998981 G A SSH2 Missense_Mutation p.P234S 0.26 tolerated(0.2) benign(0.063) TCGA-EE-A2MI-06 17 28656313 28656313 C T TMIGD1 Missense_Mutation p.G106E 0.25 tolerated(0.18) benign(0.062) TCGA-EE-A2MI-06 17 28890221 28890221 C T TBC1D29 Silent p.A77A 0.30 TCGA-EE-A2MI-06 17 29559743 29559743 T A NF1 Missense_Mutation p.L1114M 0.29 tolerated(0.13) probably_damaging(0.986) TCGA-EE-A2MI-06 17 2966263 2966263 G A OR1D5 Silent p.F213F 0.37 TCGA-EE-A2MI-06 17 30536317 30536317 C T RHOT1 Intron 0.38 TCGA-EE-A2MI-06 17 30694883 30694883 C T ZNF207 Silent p.F338F 0.42 TCGA-EE-A2MI-06 17 3181392 3181392 C T OR3A2 Missense_Mutation p.D280N 0.29 deleterious(0.01) possibly_damaging(0.517) TCGA-EE-A2MI-06 17 32647872 32647872 G A CCL8 Nonsense_Mutation p.W82* 0.19 TCGA-EE-A2MI-06 17 34539888 34539888 C T CCL4L1 Nonsense_Mutation p.Q66* 0.45 TCGA-EE-A2MI-06 17 3655001 3655001 G A ITGAE Silent p.F612F 0.23 TCGA-EE-A2MI-06 17 36878937 36878937 A G MLLT6 Silent p.T933T 0.15 TCGA-EE-A2MI-06 17 37243946 37243946 C T PLXDC1 Missense_Mutation p.R274Q 0.33 tolerated(0.13) probably_damaging(0.932) TCGA-EE-A2MI-06 17 39334064 39334064 G A KRTAP4-2 Missense_Mutation p.P118L 0.51 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2MI-06 17 39776926 39776926 T A KRT17 Missense_Mutation p.E389V 0.20 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MI-06 17 39776928 39776928 C T KRT17 Silent p.L388L 0.21 TCGA-EE-A2MI-06 17 40766579 40766579 C T TUBG1 Silent p.A354A 0.41 TCGA-EE-A2MI-06 17 40837285 40837285 C T CNTNAP1 Missense_Mutation p.P188S 0.13 tolerated(0.2) benign(0.005) TCGA-EE-A2MI-06 17 40839962 40839962 C T CNTNAP1 Silent p.I423I 0.22 TCGA-EE-A2MI-06 17 41006581 41006581 G A AOC3 Missense_Mutation p.E573K 0.45 tolerated(0.13) probably_damaging(0.933) TCGA-EE-A2MI-06 17 41939181 41939181 G A CD300LG Missense_Mutation p.E301K 0.54 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A2MI-06 17 42327849 42327849 C T SLC4A1 Missense_Mutation p.D905N 0.22 tolerated(1) benign(0.005) TCGA-EE-A2MI-06 17 42848992 42848992 G A ADAM11 Missense_Mutation p.G141E 0.25 deleterious(0) benign(0.314) TCGA-EE-A2MI-06 17 43182242 43182242 T C NMT1 Missense_Mutation p.F450L 0.38 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2MI-06 17 43196366 43196366 G A PLCD3 Silent p.I243I 0.36 TCGA-EE-A2MI-06 17 43922422 43922422 C T SPPL2C Silent p.P50P 0.41 TCGA-EE-A2MI-06 17 44060998 44060998 C T MAPT Silent p.S276S 0.14 TCGA-EE-A2MI-06 17 45901487 45901487 C T MRPL10 3'UTR 0.42 TCGA-EE-A2MI-06 17 46423357 46423357 C T SKAP1 Missense_Mutation p.G64R 0.32 tolerated(0.29) probably_damaging(0.916) TCGA-EE-A2MI-06 17 46799788 46799788 C T PRAC1 5'UTR 0.22 TCGA-EE-A2MI-06 17 47115627 47115627 C T IGF2BP1 Missense_Mutation p.R167C 0.21 tolerated(0.06) benign(0.022) TCGA-EE-A2MI-06 17 47656122 47656122 G A NXPH3 Silent p.G73G 0.40 TCGA-EE-A2MI-06 17 49825153 49825153 C T CA10 Missense_Mutation p.G102E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 17 55478817 55478817 C T MSI2 Silent p.F130F 0.40 TCGA-EE-A2MI-06 17 55917233 55917233 A G MRPS23 Silent p.L162L 0.41 TCGA-EE-A2MI-06 17 56247560 56247560 C T OR4D2 Missense_Mutation p.P182S 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 17 59668312 59668312 C T NACA2 Missense_Mutation p.R77Q 0.46 tolerated(0.07) possibly_damaging(0.841) TCGA-EE-A2MI-06 17 59945003 59945003 C T INTS2 Missense_Mutation p.G1177E 0.25 tolerated_low_confidence(0.21) benign(0.004) TCGA-EE-A2MI-06 17 613784 613784 G A VPS53 Missense_Mutation p.P53S 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MI-06 17 61558997 61558997 C T ACE Missense_Mutation p.P339L 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A2MI-06 17 61620959 61620959 C T KCNH6 Missense_Mutation p.S724F 0.17 tolerated(0.31) benign(0.212) TCGA-EE-A2MI-06 17 64875095 64875095 G A CACNG5 Missense_Mutation p.E68K 0.29 tolerated(0.66) benign(0.072) TCGA-EE-A2MI-06 17 67016591 67016591 G C ABCA9 Silent p.V846V 0.53 TCGA-EE-A2MI-06 17 67106984 67106984 G A ABCA6 Missense_Mutation p.L744F 0.17 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MI-06 17 7106568 7106568 C T DLG4 Missense_Mutation p.E239K 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2MI-06 17 72248397 72248397 A T TTYH2 Missense_Mutation p.I381F 0.46 tolerated(0.57) benign(0.19) TCGA-EE-A2MI-06 17 72338108 72338108 G A KIF19 Missense_Mutation p.D72N 0.19 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2MI-06 17 72588888 72588888 C T C17orf77 Missense_Mutation p.P235S 0.21 unknown(0) TCGA-EE-A2MI-06 17 72860067 72860067 G A FDXR Silent p.S418S 0.21 TCGA-EE-A2MI-06 17 72862359 72862359 C T FDXR Missense_Mutation p.G177E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 17 72862360 72862360 C T FDXR Missense_Mutation p.G177R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 17 73754103 73754103 C A GALK1 3'UTR 0.61 TCGA-EE-A2MI-06 17 74005349 74005349 C T EVPL Missense_Mutation p.V1313M 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MI-06 17 76497432 76497432 G A DNAH17 Intron 0.46 TCGA-EE-A2MI-06 17 76540046 76540046 C T DNAH17 Missense_Mutation p.D809N 0.49 benign(0.074) TCGA-EE-A2MI-06 17 7664188 7664188 C T DNAH2 Silent p.S972S 0.35 TCGA-EE-A2MI-06 17 7680855 7680855 T C DNAH2 Missense_Mutation p.I1717T 0.32 benign(0.04) TCGA-EE-A2MI-06 17 76993521 76993521 G A CANT1 Missense_Mutation p.H62Y 0.57 tolerated(0.15) possibly_damaging(0.71) TCGA-EE-A2MI-06 17 79634756 79634756 C T CCDC137 Intron 0.28 TCGA-EE-A2MI-06 17 79980701 79980701 C T STRA13 Splice_Site p.X12_splice 0.56 TCGA-EE-A2MI-06 17 79980702 79980702 C T STRA13 Silent p.K12K 0.60 TCGA-EE-A2MI-06 17 8215754 8215754 C T ARHGEF15 Missense_Mutation p.P133S 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.549) TCGA-EE-A2MI-06 17 8701850 8701850 G A MFSD6L Missense_Mutation p.H197Y 0.28 tolerated(0.06) benign(0.058) TCGA-EE-A2MI-06 17 8726721 8726721 G A PIK3R6 Nonsense_Mutation p.Q537* 0.29 TCGA-EE-A2MI-06 18 10675266 10675266 G A PIEZO2 Missense_Mutation p.P2588S 0.34 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A2MI-06 18 28659870 28659870 C A DSC2 Nonsense_Mutation p.E536* 0.32 TCGA-EE-A2MI-06 18 28671022 28671022 G A DSC2 Missense_Mutation p.S148F 0.21 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MI-06 18 28970666 28970666 C T DSG4 Missense_Mutation p.H189Y 0.38 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MI-06 18 29036436 29036436 G A DSG3 Missense_Mutation p.E28K 0.19 tolerated(0.08) benign(0.006) TCGA-EE-A2MI-06 18 29340052 29340052 G A SLC25A52 Silent p.F201F 0.28 TCGA-EE-A2MI-06 18 31323549 31323549 C T ASXL3 Missense_Mutation p.S1246L 0.17 benign(0.009) TCGA-EE-A2MI-06 18 31323829 31323829 C T ASXL3 Silent p.T1339T 0.23 TCGA-EE-A2MI-06 18 42532839 42532839 C T SETBP1 Silent p.A1178A 0.39 TCGA-EE-A2MI-06 18 48190536 48190536 C T MAPK4 Missense_Mutation p.R70W 0.42 deleterious(0) possibly_damaging(0.785) TCGA-EE-A2MI-06 18 48326495 48326495 G A MRO Nonsense_Mutation p.Q216* 0.34 TCGA-EE-A2MI-06 18 50976915 50976915 C T DCC Missense_Mutation p.P1092L 0.24 deleterious(0) benign(0.082) TCGA-EE-A2MI-06 18 52544930 52544930 C T RAB27B Silent p.F38F 0.28 TCGA-EE-A2MI-06 18 55992285 55992285 C T NEDD4L Missense_Mutation p.P191S 0.28 tolerated(0.32) probably_damaging(0.998) TCGA-EE-A2MI-06 18 59221606 59221606 C T CDH20 Missense_Mutation p.P695L 0.19 tolerated(0.56) benign(0) TCGA-EE-A2MI-06 18 61377503 61377503 G A SERPINB11 Missense_Mutation p.D26N 0.24 deleterious(0.01) benign(0.274) TCGA-EE-A2MI-06 18 6311588 6311588 C T L3MBTL4 Missense_Mutation p.D13N 0.22 deleterious(0.02) benign(0.135) TCGA-EE-A2MI-06 18 6311589 6311589 C T L3MBTL4 Missense_Mutation p.M12I 0.22 tolerated(0.32) benign(0.002) TCGA-EE-A2MI-06 18 63477088 63477088 T C CDH7 Missense_Mutation p.L120P 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 18 63477090 63477090 C T CDH7 Nonsense_Mutation p.R121* 0.24 TCGA-EE-A2MI-06 18 6948508 6948508 G A LAMA1 Silent p.S2868S 0.43 TCGA-EE-A2MI-06 18 6975027 6975027 G A LAMA1 Silent p.F2166F 0.44 TCGA-EE-A2MI-06 18 7024446 7024446 G A LAMA1 Missense_Mutation p.L808F 0.18 tolerated(0.06) probably_damaging(0.931) TCGA-EE-A2MI-06 18 7024447 7024447 G A LAMA1 Silent p.H807H 0.14 TCGA-EE-A2MI-06 18 72997681 72997681 T A TSHZ1 Missense_Mutation p.S62T 0.36 tolerated(0.4) benign(0.12) TCGA-EE-A2MI-06 18 74980684 74980684 G A GALR1 Silent p.A292A 0.35 TCGA-EE-A2MI-06 18 77108142 77108142 C T ATP9B Missense_Mutation p.S950F 0.27 deleterious(0) possibly_damaging(0.655) TCGA-EE-A2MI-06 18 9533365 9533365 C T RALBP1 Silent p.L496L 0.39 TCGA-EE-A2MI-06 19 10089653 10089653 C T COL5A3 Missense_Mutation p.E960K 0.21 unknown(0) TCGA-EE-A2MI-06 19 10158089 10158089 C T C3P1 RNA 0.35 TCGA-EE-A2MI-06 19 10225761 10225761 C A P2RY11 3'UTR 0.23 TCGA-EE-A2MI-06 19 10421288 10421288 G A FDX1L Silent p.L142L 0.25 TCGA-EE-A2MI-06 19 11152215 11152215 C T SMARCA4 Missense_Mutation p.A1468V 0.31 benign(0.051) TCGA-EE-A2MI-06 19 11333778 11333778 A G DOCK6 Missense_Mutation p.V987A 0.25 tolerated(0.51) benign(0.001) TCGA-EE-A2MI-06 19 12502345 12502345 G A ZNF799 Silent p.A289A 0.29 TCGA-EE-A2MI-06 19 12502346 12502346 G A ZNF799 Missense_Mutation p.A289V 0.29 deleterious(0.04) probably_damaging(0.982) TCGA-EE-A2MI-06 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.37 TCGA-EE-A2MI-06 19 13418632 13418632 G A CACNA1A Silent p.F650F 0.30 TCGA-EE-A2MI-06 19 14938706 14938706 G A OR7A5 Silent p.S116S 0.25 TCGA-EE-A2MI-06 19 15067400 15067400 G A SLC1A6 Missense_Mutation p.H353Y 0.43 deleterious(0) benign(0.106) TCGA-EE-A2MI-06 19 15511150 15511150 C G AKAP8L Missense_Mutation p.G335A 0.22 tolerated(0.42) benign(0.196) TCGA-EE-A2MI-06 19 15574876 15574876 C T RASAL3 Silent p.P98P 0.35 TCGA-EE-A2MI-06 19 15917966 15917966 C T OR10H1 Silent p.R294R 0.17 TCGA-EE-A2MI-06 19 16025448 16025448 C T CYP4F11 Silent p.G426G 0.41 TCGA-EE-A2MI-06 19 16275555 16275555 C T CIB3 Missense_Mutation p.M172I 0.31 tolerated(0.14) probably_damaging(0.989) TCGA-EE-A2MI-06 19 16860477 16860477 C T NWD1 Missense_Mutation p.P342S 0.28 tolerated(0.07) benign(0.197) TCGA-EE-A2MI-06 19 16860478 16860478 C T NWD1 Missense_Mutation p.P342L 0.25 deleterious(0.05) benign(0.018) TCGA-EE-A2MI-06 19 16860798 16860798 C T NWD1 Missense_Mutation p.R449W 0.24 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A2MI-06 19 16902315 16902315 G A NWD1 Missense_Mutation p.G1032E 0.32 deleterious(0.04) probably_damaging(0.945) TCGA-EE-A2MI-06 19 17013605 17013605 C T CPAMD8 Silent p.Q1560Q 0.34 TCGA-EE-A2MI-06 19 17598335 17598335 G T SLC27A1 Missense_Mutation p.S264I 0.25 deleterious(0) possibly_damaging(0.837) TCGA-EE-A2MI-06 19 18191674 18191674 G A IL12RB1 Missense_Mutation p.S126F 0.19 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MI-06 19 18726820 18726820 C T TMEM59L Silent p.S148S 0.26 TCGA-EE-A2MI-06 19 19334879 19334879 C T NCAN Silent p.F175F 0.35 TCGA-EE-A2MI-06 19 22362968 22362968 G A ZNF676 Silent p.S517S 0.24 TCGA-EE-A2MI-06 19 37677598 37677598 G A ZNF585B Nonsense_Mutation p.Q281* 0.24 TCGA-EE-A2MI-06 19 3778521 3778521 G A MATK Missense_Mutation p.P425S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 19 37853799 37853799 C T HKR1 Silent p.L368L 0.26 TCGA-EE-A2MI-06 19 38976641 38976641 C T RYR1 Silent p.F1782F 0.32 TCGA-EE-A2MI-06 19 39008001 39008001 C T RYR1 Silent p.L3230L 0.43 TCGA-EE-A2MI-06 19 40732416 40732416 G A CNTD2 Missense_Mutation p.P45S 0.33 deleterious(0.01) benign(0.335) TCGA-EE-A2MI-06 19 41622175 41622175 G A CYP2F1 Missense_Mutation p.G28R 0.28 tolerated(0.13) benign(0.009) TCGA-EE-A2MI-06 19 41903149 41903149 G A EXOSC5 Missense_Mutation p.R29W 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 19 42221515 42221515 C T CEACAM5 Missense_Mutation p.P367L 0.31 tolerated(0.12) unknown(0) TCGA-EE-A2MI-06 19 42266031 42266031 C T CEACAM6 Silent p.I286I 0.25 TCGA-EE-A2MI-06 19 43372272 43372272 G A PSG1 Silent p.S408S 0.27 TCGA-EE-A2MI-06 19 43689174 43689174 C T PSG5 Missense_Mutation p.G64S 0.23 tolerated(0.08) benign(0.122) TCGA-EE-A2MI-06 19 43689225 43689225 C T PSG5 Missense_Mutation p.E47K 0.34 deleterious(0.04) benign(0.078) TCGA-EE-A2MI-06 19 44536578 44536578 C T ZNF222 Missense_Mutation p.H291Y 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 19 45368885 45368885 C T PVRL2 Missense_Mutation p.S149F 0.43 deleterious(0) possibly_damaging(0.836) TCGA-EE-A2MI-06 19 45895344 45895344 G A PPP1R13L Missense_Mutation p.P537S 0.34 tolerated(0.13) possibly_damaging(0.641) TCGA-EE-A2MI-06 19 45895345 45895345 G A PPP1R13L Silent p.P536P 0.35 TCGA-EE-A2MI-06 19 46289693 46289693 G A DMWD Missense_Mutation p.S354F 0.24 deleterious(0) possibly_damaging(0.751) TCGA-EE-A2MI-06 19 47548651 47548651 G A NPAS1 Silent p.Q505Q 0.24 TCGA-EE-A2MI-06 19 4770784 4770784 C T MIR7-3 RNA 0.35 TCGA-EE-A2MI-06 19 47823062 47823062 G A C5AR1 Missense_Mutation p.D10N 0.27 tolerated(0.2) benign(0.018) TCGA-EE-A2MI-06 19 50000830 50000830 C T RPS11 Silent p.S67S 0.22 TCGA-EE-A2MI-06 19 50045922 50045922 T G RCN3 Missense_Mutation p.S264R 0.23 tolerated(0.08) benign(0.001) TCGA-EE-A2MI-06 19 50370417 50370417 G A PNKP Silent p.P15P 0.20 TCGA-EE-A2MI-06 19 51022436 51022436 G A LRRC4B Silent p.F178F 0.30 TCGA-EE-A2MI-06 19 51205794 51205794 G A SHANK1 Silent p.F559F 0.30 TCGA-EE-A2MI-06 19 51629369 51629369 C T SIGLEC9 Silent p.F244F 0.23 TCGA-EE-A2MI-06 19 51770669 51770669 G A SIGLECL1 Silent p.A151A 0.35 TCGA-EE-A2MI-06 19 52217175 52217175 G A HAS1 Silent p.F414F 0.27 TCGA-EE-A2MI-06 19 52327323 52327323 A G FPR3 Missense_Mutation p.N108D 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 19 53762620 53762620 C T VN1R2 Missense_Mutation p.S331F 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 19 55143633 55143633 G A LILRB1 Silent p.S202S 0.28 TCGA-EE-A2MI-06 19 55221631 55221631 C T AC098784.2 3'Flank 0.31 TCGA-EE-A2MI-06 19 55222099 55222099 C T AC098784.2 3'Flank 0.33 TCGA-EE-A2MI-06 19 55385727 55385727 C T FCAR 5'Flank 0.21 TCGA-EE-A2MI-06 19 55449500 55449500 C T NLRP7 Missense_Mutation p.E681K 0.30 deleterious(0.04) benign(0.008) TCGA-EE-A2MI-06 19 55450858 55450858 G A NLRP7 Silent p.S443S 0.20 TCGA-EE-A2MI-06 19 56243537 56243537 C T NLRP9 Missense_Mutation p.E554K 0.35 deleterious(0.01) possibly_damaging(0.678) TCGA-EE-A2MI-06 19 56319282 56319282 C T NLRP11 Missense_Mutation p.G647D 0.29 tolerated(1) benign(0) TCGA-EE-A2MI-06 19 56369516 56369516 G A NLRP4 Missense_Mutation p.E253K 0.32 tolerated(0.1) benign(0.206) TCGA-EE-A2MI-06 19 56466362 56466362 C T NLRP8 Missense_Mutation p.S313F 0.17 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MI-06 19 56572977 56572977 G A NLRP5 3'UTR 0.35 TCGA-EE-A2MI-06 19 56953217 56953217 C T ZNF667 Missense_Mutation p.E383K 0.31 tolerated(0.15) benign(0.005) TCGA-EE-A2MI-06 19 57037299 57037299 T C ZNF471 Silent p.H621H 0.33 TCGA-EE-A2MI-06 19 57293392 57293392 G A ZIM2 Missense_Mutation p.S192F 0.32 tolerated(0.68) benign(0.044) TCGA-EE-A2MI-06 19 57646543 57646543 C T ZIM3 Missense_Mutation p.E388K 0.18 deleterious(0.05) benign(0.043) TCGA-EE-A2MI-06 19 58189660 58189660 C T ZSCAN4 Missense_Mutation p.P230L 0.24 tolerated(0.39) benign(0.028) TCGA-EE-A2MI-06 19 6312490 6312490 G A ACER1 Silent p.F38F 0.29 TCGA-EE-A2MI-06 19 6590921 6590921 C T CD70 Silent p.V31V 0.37 TCGA-EE-A2MI-06 19 6665287 6665287 C T TNFSF14 Missense_Mutation p.G125S 0.31 tolerated(0.08) benign(0.259) TCGA-EE-A2MI-06 19 8563972 8563972 G A PRAM1 Silent p.S240S 0.22 TCGA-EE-A2MI-06 19 9005617 9005617 G A MUC16 Silent p.T13263T 0.26 TCGA-EE-A2MI-06 19 9012794 9012794 C T MUC16 Missense_Mutation p.E12884K 0.25 probably_damaging(0.973) TCGA-EE-A2MI-06 19 9028321 9028321 C T MUC16 Silent p.L12157L 0.32 TCGA-EE-A2MI-06 19 9061224 9061224 G A MUC16 Missense_Mutation p.S8741F 0.25 unknown(0) TCGA-EE-A2MI-06 19 9063963 9063963 G A MUC16 Missense_Mutation p.S7828F 0.30 unknown(0) TCGA-EE-A2MI-06 19 9072184 9072184 C T MUC16 Missense_Mutation p.E5088K 0.27 unknown(0) TCGA-EE-A2MI-06 19 9074844 9074844 C T MUC16 Missense_Mutation p.G4201E 0.17 unknown(0) TCGA-EE-A2MI-06 19 9086150 9086150 C T MUC16 Missense_Mutation p.G1889R 0.26 unknown(0) TCGA-EE-A2MI-06 19 9088781 9088781 T C MUC16 Missense_Mutation p.T1012A 0.30 unknown(0) TCGA-EE-A2MI-06 19 9225705 9225705 G A OR7G1 Silent p.L245L 0.33 TCGA-EE-A2MI-06 19 9296555 9296555 C T OR7D2 Missense_Mutation p.S33F 0.39 tolerated_low_confidence(0.05) benign(0.008) TCGA-EE-A2MI-06 19 9578870 9578870 G A ZNF560 Silent p.L251L 0.21 TCGA-EE-A2MI-06 19 9801757 9801757 G A ZNF812 Missense_Mutation p.P141L 0.25 tolerated(0.09) benign(0.021) TCGA-EE-A2MI-06 1 102269750 102269750 C T OLFM3 3'UTR 0.56 TCGA-EE-A2MI-06 1 10713648 10713648 A C CASZ1 Silent p.G822G 0.39 TCGA-EE-A2MI-06 1 110207637 110207637 C T GSTM4 3'Flank 0.38 TCGA-EE-A2MI-06 1 115453118 115453118 G A SYCP1 Missense_Mutation p.R474K 0.42 tolerated(0.31) benign(0.032) TCGA-EE-A2MI-06 1 119427590 119427590 G A TBX15 Missense_Mutation p.S419F 0.35 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MI-06 1 120277300 120277300 C T PHGDH Missense_Mutation p.S185F 0.26 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MI-06 1 12785267 12785267 C T AADACL3 Silent p.S119S 0.27 TCGA-EE-A2MI-06 1 12835238 12835238 G A PRAMEF12 Silent p.E76E 0.33 TCGA-EE-A2MI-06 1 12837676 12837676 G A PRAMEF12 Silent p.R462R 0.24 TCGA-EE-A2MI-06 1 12853576 12853576 G A PRAMEF1 Missense_Mutation p.G67E 0.25 deleterious(0.02) benign(0.319) TCGA-EE-A2MI-06 1 12855633 12855633 C T PRAMEF1 Silent p.L305L 0.26 TCGA-EE-A2MI-06 1 12918948 12918948 G A PRAMEF2 Missense_Mutation p.M28I 0.33 deleterious(0) benign(0.003) TCGA-EE-A2MI-06 1 12941848 12941848 C T PRAMEF4 Silent p.R234R 0.31 TCGA-EE-A2MI-06 1 145115983 145115983 C T SEC22B RNA 0.11 TCGA-EE-A2MI-06 1 148252068 148252068 G A NBPF20 Missense_Mutation p.S4558L 0.23 benign(0.4) TCGA-EE-A2MI-06 1 150960762 150960762 C T ANXA9 Missense_Mutation p.S266L 0.23 tolerated(0.07) benign(0.011) TCGA-EE-A2MI-06 1 152058892 152058892 C T TCHHL1 Silent p.Q422Q 0.36 TCGA-EE-A2MI-06 1 152127137 152127137 C T RPTN 3'UTR 0.30 TCGA-EE-A2MI-06 1 152326877 152326877 C T FLG2 Missense_Mutation p.G1129R 0.32 unknown(0) TCGA-EE-A2MI-06 1 152329303 152329303 C T FLG2 Missense_Mutation p.G320E 0.30 unknown(0) TCGA-EE-A2MI-06 1 152538369 152538369 C T LCE3E 3'UTR 0.22 TCGA-EE-A2MI-06 1 152732712 152732712 C T KPRP Silent p.S216S 0.27 TCGA-EE-A2MI-06 1 152800038 152800038 C T LCE1A Silent p.P30P 0.27 TCGA-EE-A2MI-06 1 152800122 152800122 C T LCE1A Silent p.G58G 0.11 TCGA-EE-A2MI-06 1 152800123 152800123 G T LCE1A Missense_Mutation p.G59C 0.10 tolerated_low_confidence(0.19) unknown(0) TCGA-EE-A2MI-06 1 152800131 152800131 C T LCE1A Silent p.S61S 0.11 TCGA-EE-A2MI-06 1 153270446 153270446 G A PGLYRP3 Missense_Mutation p.H338Y 0.28 deleterious(0.01) benign(0.099) TCGA-EE-A2MI-06 1 153270515 153270515 C T PGLYRP3 Missense_Mutation p.G315S 0.24 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MI-06 1 153279639 153279639 C T PGLYRP3 Missense_Mutation p.G54R 0.35 tolerated(0.06) benign(0.327) TCGA-EE-A2MI-06 1 153330852 153330852 C T S100A9 Silent p.T31T 0.35 TCGA-EE-A2MI-06 1 153409544 153409544 C T S100A7L2 Missense_Mutation p.G110E 0.30 tolerated(0.08) probably_damaging(0.988) TCGA-EE-A2MI-06 1 153533975 153533975 G A S100A2 Silent p.F78F 0.18 TCGA-EE-A2MI-06 1 155182223 155182223 G A MTX1 Silent p.R273R 0.15 TCGA-EE-A2MI-06 1 157771861 157771861 G A FCRL1 Missense_Mutation p.H244Y 0.31 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2MI-06 1 15819453 15819453 G A CASP9 Silent p.F412F 0.33 TCGA-EE-A2MI-06 1 158517495 158517495 G C OR6Y1 Missense_Mutation p.P134R 0.29 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MI-06 1 158609395 158609395 C T SPTA1 Missense_Mutation p.E1653K 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 1 158624513 158624513 C T SPTA1 Missense_Mutation p.G975E 0.29 tolerated(0.56) benign(0.023) TCGA-EE-A2MI-06 1 159015122 159015122 C T IFI16 Silent p.F455F 0.23 TCGA-EE-A2MI-06 1 159558454 159558454 G A APCS Missense_Mutation p.E210K 0.22 tolerated(0.17) benign(0.1) TCGA-EE-A2MI-06 1 160090788 160090788 G A ATP1A2 Silent p.K35K 0.27 TCGA-EE-A2MI-06 1 160720162 160720162 C T SLAMF7 Missense_Mutation p.L240F 0.32 tolerated(0.22) benign(0.02) TCGA-EE-A2MI-06 1 160788098 160788098 G A LY9 Missense_Mutation p.R478Q 0.24 tolerated(1) benign(0) TCGA-EE-A2MI-06 1 160797708 160797708 C T LY9 3'UTR 0.34 TCGA-EE-A2MI-06 1 160832449 160832449 T A CD244 Missense_Mutation p.T7S 0.32 tolerated(0.33) benign(0.01) TCGA-EE-A2MI-06 1 161161968 161161968 G A ADAMTS4 Silent p.I658I 0.39 TCGA-EE-A2MI-06 1 166904701 166904701 C T ILDR2 Silent p.G239G 0.26 TCGA-EE-A2MI-06 1 166958989 166958989 G A MAEL Missense_Mutation p.E50K 0.24 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MI-06 1 167097024 167097024 G A DUSP27 Missense_Mutation p.D886N 0.34 tolerated(0.08) benign(0.01) TCGA-EE-A2MI-06 1 167889227 167889227 G A MPC2 Missense_Mutation p.R113C 0.26 deleterious(0) possibly_damaging(0.631) TCGA-EE-A2MI-06 1 169446660 169446660 G A SLC19A2 Silent p.V180V 0.26 TCGA-EE-A2MI-06 1 169524446 169524446 T G F5 Silent p.A364A 0.30 TCGA-EE-A2MI-06 1 169564075 169564075 C T SELP Silent p.A714A 0.31 TCGA-EE-A2MI-06 1 17046556 17046556 G A ESPNP RNA 0.12 TCGA-EE-A2MI-06 1 170699432 170699432 C T PRRX1 Intron 0.23 TCGA-EE-A2MI-06 1 170705329 170705329 G A PRRX1 3'UTR 0.27 TCGA-EE-A2MI-06 1 172113767 172113767 G A DNM3 Intron 0.28 TCGA-EE-A2MI-06 1 17272816 17272816 C T CROCC Silent p.S733S 0.24 TCGA-EE-A2MI-06 1 17601191 17601191 C T PADI3 Missense_Mutation p.S406F 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 1 17601233 17601233 G A PADI3 Missense_Mutation p.G420E 0.42 tolerated(0.07) possibly_damaging(0.896) TCGA-EE-A2MI-06 1 176681099 176681099 G A PAPPA2 Silent p.E1260E 0.19 TCGA-EE-A2MI-06 1 176709186 176709186 C T PAPPA2 Silent p.F1335F 0.25 TCGA-EE-A2MI-06 1 176811610 176811610 C T PAPPA2 3'UTR 0.33 TCGA-EE-A2MI-06 1 177250781 177250781 C T BRINP2 3'UTR 0.21 TCGA-EE-A2MI-06 1 178820340 178820340 C T ANGPTL1 Missense_Mutation p.G467E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 179497464 179497464 A G AXDND1 Silent p.Q871Q 0.25 TCGA-EE-A2MI-06 1 179599910 179599910 T C TDRD5 Silent p.F327F 0.37 TCGA-EE-A2MI-06 1 183083788 183083788 T G LAMC1 Missense_Mutation p.C382G 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 185153928 185153928 C T SWT1 Missense_Mutation p.R432C 0.32 deleterious(0.01) benign(0.44) TCGA-EE-A2MI-06 1 190234050 190234050 C T BRINP3 Missense_Mutation p.R188K 0.18 tolerated(0.13) benign(0.187) TCGA-EE-A2MI-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.24 TCGA-EE-A2MI-06 1 19431085 19431085 G A UBR4 Missense_Mutation p.L4241F 0.12 probably_damaging(0.969) TCGA-EE-A2MI-06 1 196438156 196438156 C T KCNT2 Missense_Mutation p.E143K 0.35 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MI-06 1 196706689 196706689 G A CFH Missense_Mutation p.G894E 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MI-06 1 196967416 196967416 C T CFHR5 Missense_Mutation p.P377S 0.33 deleterious(0.03) benign(0.336) TCGA-EE-A2MI-06 1 196977674 196977674 G A CFHR5 Missense_Mutation p.R524K 0.40 tolerated(1) benign(0) TCGA-EE-A2MI-06 1 19949983 19949983 T C MINOS1 Missense_Mutation p.L43S 0.29 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2MI-06 1 200969850 200969850 C T KIF21B Silent p.E487E 0.40 TCGA-EE-A2MI-06 1 201019617 201019617 T C CACNA1S Missense_Mutation p.M1381V 0.31 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MI-06 1 201047112 201047112 C T CACNA1S Missense_Mutation p.C505Y 0.41 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MI-06 1 202862461 202862461 G A KLHL12 Missense_Mutation p.R496C 0.29 tolerated(0.05) benign(0.014) TCGA-EE-A2MI-06 1 204226948 204226948 G A PLEKHA6 Missense_Mutation p.P353S 0.26 tolerated(0.11) benign(0.02) TCGA-EE-A2MI-06 1 204923443 204923443 G A NFASC Missense_Mutation p.E115K 0.22 tolerated(0.12) probably_damaging(0.947) TCGA-EE-A2MI-06 1 205589662 205589662 G A ELK4 Missense_Mutation p.P171L 0.34 tolerated(0.17) benign(0.053) TCGA-EE-A2MI-06 1 206224958 206224958 C T AVPR1B Missense_Mutation p.S173F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 21014262 21014262 G A KIF17 Silent p.S519S 0.29 TCGA-EE-A2MI-06 1 21551882 21551882 G A ECE1 Missense_Mutation p.S634F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 215844436 215844436 C T USH2A Missense_Mutation p.E4671K 0.20 possibly_damaging(0.844) TCGA-EE-A2MI-06 1 215847677 215847677 G A USH2A Nonsense_Mutation p.R4526* 0.30 TCGA-EE-A2MI-06 1 220284190 220284190 C T IARS2 Missense_Mutation p.P464S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 223177379 223177379 C T DISP1 Silent p.P880P 0.28 TCGA-EE-A2MI-06 1 223177389 223177389 G A DISP1 Missense_Mutation p.E884K 0.30 deleterious(0.03) benign(0.097) TCGA-EE-A2MI-06 1 227920411 227920411 C A SNAP47 5'Flank 0.37 TCGA-EE-A2MI-06 1 228033839 228033839 C T PRSS38 Missense_Mutation p.A304V 0.25 tolerated(0.05) possibly_damaging(0.516) TCGA-EE-A2MI-06 1 228473858 228473858 C T OBSCN Silent p.I3457I 0.40 TCGA-EE-A2MI-06 1 228528804 228528804 C T OBSCN Silent p.F6859F 0.32 TCGA-EE-A2MI-06 1 228538555 228538555 C T OBSCN Silent p.F7067F 0.13 TCGA-EE-A2MI-06 1 22913029 22913029 C T EPHA8 Missense_Mutation p.P294S 0.28 deleterious(0) possibly_damaging(0.501) TCGA-EE-A2MI-06 1 229431640 229431640 C T RAB4A Silent p.L91L 0.34 TCGA-EE-A2MI-06 1 230461093 230461093 G C PGBD5 Missense_Mutation p.L379V 0.32 deleterious(0.01) possibly_damaging(0.869) TCGA-EE-A2MI-06 1 23111538 23111538 C T EPHB2 Silent p.F260F 0.22 TCGA-EE-A2MI-06 1 233807093 233807093 C T KCNK1 Silent p.F276F 0.37 TCGA-EE-A2MI-06 1 23769057 23769057 G A ASAP3 Silent p.I174I 0.17 TCGA-EE-A2MI-06 1 240286540 240286540 G A FMN2 Silent p.E559E 0.30 TCGA-EE-A2MI-06 1 24417428 24417428 G A MYOM3 Missense_Mutation p.R431W 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 1 247200868 247200868 G A ZNF670 Silent p.A351A 0.44 TCGA-EE-A2MI-06 1 247654847 247654847 C T OR2W5 RNA 0.18 TCGA-EE-A2MI-06 1 247695676 247695676 G A OR2C3 Silent p.I46I 0.25 TCGA-EE-A2MI-06 1 247768910 247768910 C T OR2G3 Missense_Mutation p.S8F 0.22 tolerated(0.26) benign(0.014) TCGA-EE-A2MI-06 1 247835886 247835886 G A OR13G1 Missense_Mutation p.S153F 0.22 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MI-06 1 247836268 247836268 G A OR13G1 Missense_Mutation p.L26F 0.38 tolerated(0.7) benign(0.002) TCGA-EE-A2MI-06 1 248201644 248201644 C T OR2L2 Silent p.F25F 0.25 TCGA-EE-A2MI-06 1 248308834 248308834 C T OR2M5 Missense_Mutation p.P129S 0.22 deleterious(0.02) possibly_damaging(0.725) TCGA-EE-A2MI-06 1 248308892 248308892 C T OR2M5 Missense_Mutation p.S148F 0.22 deleterious(0.02) benign(0.25) TCGA-EE-A2MI-06 1 25599183 25599183 C A RHD Missense_Mutation p.Q49K 0.56 tolerated(0.35) possibly_damaging(0.507) TCGA-EE-A2MI-06 1 26646834 26646834 G A CD52 3'UTR 0.23 TCGA-EE-A2MI-06 1 27269436 27269436 C T NUDC Silent p.L207L 0.39 TCGA-EE-A2MI-06 1 29542634 29542634 G A MECR Missense_Mutation p.L97F 0.17 deleterious(0.02) benign(0.177) TCGA-EE-A2MI-06 1 34015943 34015943 G A CSMD2 Silent p.S2773S 0.20 TCGA-EE-A2MI-06 1 38155297 38155297 C A C1orf109 Missense_Mutation p.D86Y 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-EE-A2MI-06 1 38155298 38155298 C T C1orf109 Silent p.L85L 0.32 TCGA-EE-A2MI-06 1 40422863 40422863 C T MFSD2A Silent p.F66F 0.26 TCGA-EE-A2MI-06 1 42880252 42880252 C T RIMKLA Silent p.L261L 0.30 TCGA-EE-A2MI-06 1 44085233 44085233 C T PTPRF Missense_Mutation p.L1641F 0.37 deleterious(0) possibly_damaging(0.853) TCGA-EE-A2MI-06 1 44447572 44447572 C T B4GALT2 Silent p.R204R 0.19 TCGA-EE-A2MI-06 1 47348665 47348665 G A CYP4Z2P RNA 0.17 TCGA-EE-A2MI-06 1 51787445 51787445 C T TTC39A Missense_Mutation p.D36N 0.24 tolerated(0.7) possibly_damaging(0.657) TCGA-EE-A2MI-06 1 51934223 51934224 - A EPS15 Frame_Shift_Ins p.L77Ffs*17 0.15 TCGA-EE-A2MI-06 1 56962279 56962279 C T PPAP2B Missense_Mutation p.E294K 0.30 tolerated(0.07) benign(0.075) TCGA-EE-A2MI-06 1 57399040 57399040 G A C8B Missense_Mutation p.P507L 0.26 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A2MI-06 1 62672651 62672651 G A L1TD1 Silent p.G117G 0.19 TCGA-EE-A2MI-06 1 62911009 62911009 A G USP1 Silent p.E386E 0.19 TCGA-EE-A2MI-06 1 64120092 64120092 C T PGM1 Silent p.I536I 0.32 TCGA-EE-A2MI-06 1 65243731 65243731 C T RAVER2 Silent p.L248L 0.38 TCGA-EE-A2MI-06 1 66102401 66102401 C T LEPR Silent p.F1067F 0.26 TCGA-EE-A2MI-06 1 67266887 67266887 G A INSL5 Silent p.F6F 0.41 TCGA-EE-A2MI-06 1 70505099 70505099 G C LRRC7 Missense_Mutation p.V1160L 0.26 tolerated(0.47) benign(0.021) TCGA-EE-A2MI-06 1 75037506 75037506 C T C1orf173 Silent p.E1296E 0.27 TCGA-EE-A2MI-06 1 75038256 75038256 C T C1orf173 Silent p.R1046R 0.28 TCGA-EE-A2MI-06 1 75065500 75065500 T A C1orf173 Missense_Mutation p.K535N 0.25 deleterious(0) benign(0.267) TCGA-EE-A2MI-06 1 76378534 76378534 C T MSH4 Missense_Mutation p.P925S 0.50 tolerated_low_confidence(0.68) benign(0.001) TCGA-EE-A2MI-06 1 84385483 84385483 C T TTLL7 Missense_Mutation p.E467K 0.23 deleterious(0.03) benign(0.062) TCGA-EE-A2MI-06 1 87036790 87036790 G A CLCA4 Missense_Mutation p.G405R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 1 92713505 92713505 G A GLMN Silent p.F505F 0.17 TCGA-EE-A2MI-06 1 94473808 94473808 C T ABCA4 Missense_Mutation p.G1961R 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 1 97547948 97547948 C T DPYD Missense_Mutation p.D949N 0.36 tolerated(0.42) benign(0.006) TCGA-EE-A2MI-06 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 20 13029693 13029693 G A SPTLC3 Missense_Mutation p.G73E 0.39 deleterious(0) possibly_damaging(0.717) TCGA-EE-A2MI-06 20 1559235 1559235 G A RP4-576H24.4 Missense_Mutation p.P60L 0.27 deleterious(0.01) possibly_damaging(0.701) TCGA-EE-A2MI-06 20 16730641 16730641 G A OTOR Missense_Mutation p.E117K 0.31 tolerated(0.23) possibly_damaging(0.713) TCGA-EE-A2MI-06 20 20031172 20031172 G A CRNKL1 Missense_Mutation p.P210L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 20 20033105 20033105 G A CRNKL1 Missense_Mutation p.P122L 0.31 deleterious_low_confidence(0) benign(0) TCGA-EE-A2MI-06 20 2796252 2796252 G A C20orf141 Missense_Mutation p.G110D 0.27 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MI-06 20 29960723 29960723 G A DEFB118 Missense_Mutation p.G41E 0.42 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2MI-06 20 30142557 30142557 C T HM13 Missense_Mutation p.P245S 0.30 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MI-06 20 30407947 30407947 C T MYLK2 Missense_Mutation p.P24L 0.31 tolerated_low_confidence(0.1) benign(0.001) TCGA-EE-A2MI-06 20 31374317 31374317 C T DNMT3B Nonsense_Mutation p.R106* 0.18 TCGA-EE-A2MI-06 20 31805433 31805433 C T BPIFA3 Nonsense_Mutation p.Q31* 0.24 TCGA-EE-A2MI-06 20 33450629 33450629 G A GGT7 Missense_Mutation p.S182F 0.35 deleterious(0) possibly_damaging(0.724) TCGA-EE-A2MI-06 20 33589805 33589805 G A MYH7B Missense_Mutation p.D1953N 0.35 benign(0.125) TCGA-EE-A2MI-06 20 34025183 34025183 G A GDF5 Silent p.L176L 0.36 TCGA-EE-A2MI-06 20 34215288 34215288 G A CPNE1 Missense_Mutation p.R389C 0.39 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MI-06 20 34257606 34257606 G A NFS1 Missense_Mutation p.P438S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 20 3559287 3559287 T C ATRN Silent p.T804T 0.32 TCGA-EE-A2MI-06 20 3679916 3679916 G A SIGLEC1 Silent p.Y573Y 0.42 TCGA-EE-A2MI-06 20 36974896 36974896 G C LBP 5'UTR 0.28 TCGA-EE-A2MI-06 20 3891387 3891387 C T PANK2 Missense_Mutation p.P382L 0.28 tolerated(0.2) benign(0.045) TCGA-EE-A2MI-06 20 39792111 39792111 C T PLCG1 Silent p.L295L 0.28 TCGA-EE-A2MI-06 20 40733211 40733211 G A PTPRT Nonsense_Mutation p.Q1180* 0.29 TCGA-EE-A2MI-06 20 4163123 4163123 T G SMOX Missense_Mutation p.S333A 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2MI-06 20 43850392 43850392 C T SEMG2 Missense_Mutation p.P40L 0.20 tolerated(0.8) probably_damaging(0.995) TCGA-EE-A2MI-06 20 44238873 44238873 C T WFDC9 5'UTR 0.36 TCGA-EE-A2MI-06 20 44581339 44581339 G A ZNF335 Silent p.P904P 0.21 TCGA-EE-A2MI-06 20 45354227 45354227 C T SLC2A10 Silent p.F184F 0.25 TCGA-EE-A2MI-06 20 45771711 45771711 C T EYA2 Missense_Mutation p.S301F 0.36 tolerated(0.52) probably_damaging(0.968) TCGA-EE-A2MI-06 20 5294809 5294809 G A PROKR2 Silent p.I69I 0.41 TCGA-EE-A2MI-06 20 54961538 54961538 G A AURKA Missense_Mutation p.P32S 0.23 tolerated(0.47) benign(0.011) TCGA-EE-A2MI-06 20 55209280 55209280 G A TFAP2C Missense_Mutation p.R293K 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 20 57768850 57768850 C T ZNF831 Missense_Mutation p.P926S 0.27 tolerated(0.33) benign(0.033) TCGA-EE-A2MI-06 20 60897381 60897381 G A LAMA5 Missense_Mutation p.P2097L 0.37 benign(0.017) TCGA-EE-A2MI-06 20 61143809 61143809 C T C20orf166 5'Flank 0.20 TCGA-EE-A2MI-06 20 61461030 61461030 C T COL9A3 Silent p.V368V 0.17 TCGA-EE-A2MI-06 20 61461031 61461031 C T COL9A3 Missense_Mutation p.P369S 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 20 61477138 61477138 T C TCFL5 Intron 0.36 TCGA-EE-A2MI-06 20 61511906 61511906 C T DIDO1 Missense_Mutation p.G1801E 0.29 probably_damaging(1) TCGA-EE-A2MI-06 20 61939340 61939340 G A COL20A1 Missense_Mutation p.G225R 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 20 62192982 62192982 G A HELZ2 Missense_Mutation p.R2270W 0.33 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MI-06 20 62192983 62192983 G A HELZ2 Silent p.P2269P 0.36 TCGA-EE-A2MI-06 20 62699406 62699406 C T TCEA2 Missense_Mutation p.S83F 0.27 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2MI-06 20 854937 854937 C T ANGPT4 Silent p.V447V 0.34 TCGA-EE-A2MI-06 20 865741 865741 C T ANGPT4 Missense_Mutation p.R272K 0.17 tolerated(0.92) benign(0.009) TCGA-EE-A2MI-06 21 10862892 10862892 G A IGHV1OR21-1 Missense_Mutation p.G63E 0.16 deleterious(0) probably_damaging(0.923) TCGA-EE-A2MI-06 21 11039096 11039096 C T BAGE2 RNA 0.05 TCGA-EE-A2MI-06 21 11039257 11039257 C T BAGE2 RNA 0.05 TCGA-EE-A2MI-06 21 16337361 16337361 C T NRIP1 Silent p.K1051K 0.31 TCGA-EE-A2MI-06 21 30304892 30304892 G A LTN1 Missense_Mutation p.P1703L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 21 30400247 30400247 C T USP16 Missense_Mutation p.R5W 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 21 31655068 31655068 G A KRTAP24-1 Silent p.C61C 0.33 TCGA-EE-A2MI-06 21 34860722 34860722 G A DNAJC28 Missense_Mutation p.H327Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 21 34922632 34922655 TAAGACCACAGCGTTGGAGCTGCA - SON In_Frame_Del p.K366_Q373del 0.12 TCGA-EE-A2MI-06 21 39580464 39580464 G A DSCR10 RNA 0.24 TCGA-EE-A2MI-06 21 40847107 40847107 C T SH3BGR Missense_Mutation p.S156F 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2MI-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 21 43338965 43338965 C T C2CD2 Silent p.E199E 0.37 TCGA-EE-A2MI-06 21 45825123 45825123 C T TRPM2 Silent p.F879F 0.31 TCGA-EE-A2MI-06 21 46101760 46101760 A T KRTAP12-1 Silent p.P93P 0.15 TCGA-EE-A2MI-06 21 46900762 46900762 C T COL18A1 Missense_Mutation p.P714L 0.48 possibly_damaging(0.851) TCGA-EE-A2MI-06 22 16277636 16277636 G A POTEH Intron 0.57 TCGA-EE-A2MI-06 22 18300481 18300481 G T MICAL3 Missense_Mutation p.S1649Y 0.37 possibly_damaging(0.521) TCGA-EE-A2MI-06 22 19495387 19495387 G A CDC45 Missense_Mutation p.G384E 0.25 deleterious(0.01) possibly_damaging(0.897) TCGA-EE-A2MI-06 22 21088121 21088121 G A PI4KA Silent p.L1355L 0.28 TCGA-EE-A2MI-06 22 21088122 21088122 G A PI4KA Silent p.T1354T 0.28 TCGA-EE-A2MI-06 22 21224761 21224761 C T SNAP29 Missense_Mutation p.S125F 0.32 tolerated(0.1) possibly_damaging(0.681) TCGA-EE-A2MI-06 22 21328912 21328912 T C AIFM3 Splice_Site p.X203_splice 0.24 TCGA-EE-A2MI-06 22 24108364 24108364 G A CHCHD10 Silent p.S120S 0.19 TCGA-EE-A2MI-06 22 24583630 24583630 C T SUSD2 Silent p.F661F 0.28 TCGA-EE-A2MI-06 22 25251354 25251354 C T SGSM1 Missense_Mutation p.S209F 0.29 tolerated(0.19) benign(0.181) TCGA-EE-A2MI-06 22 29940511 29940511 G A THOC5 Nonsense_Mutation p.Q60* 0.37 TCGA-EE-A2MI-06 22 30518024 30518024 G A HORMAD2 Missense_Mutation p.E214K 0.20 deleterious(0.03) possibly_damaging(0.515) TCGA-EE-A2MI-06 22 30857339 30857339 C T SEC14L3 Missense_Mutation p.V347M 0.23 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MI-06 22 31489862 31489862 C T SMTN Intron 0.30 TCGA-EE-A2MI-06 22 31536156 31536156 C T PLA2G3 Nonsense_Mutation p.W62* 0.21 TCGA-EE-A2MI-06 22 32756464 32756464 C T RFPL3 Missense_Mutation p.S200F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 22 37524807 37524807 C T IL2RB Missense_Mutation p.E329K 0.42 deleterious(0.02) benign(0.13) TCGA-EE-A2MI-06 22 38902171 38902171 C T DDX17 Silent p.V24V 0.40 TCGA-EE-A2MI-06 22 39777762 39777762 C T SYNGR1 Missense_Mutation p.S182F 0.29 deleterious(0.03) probably_damaging(0.909) TCGA-EE-A2MI-06 22 40283589 40283589 T A ENTHD1 Missense_Mutation p.N55I 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MI-06 22 41660766 41660766 C T RANGAP1 Missense_Mutation p.G128S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 22 41968137 41968137 C T CSDC2 Silent p.T56T 0.38 TCGA-EE-A2MI-06 22 43933284 43933284 C T EFCAB6 Missense_Mutation p.G1341R 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MI-06 22 46722511 46722511 C T GTSE1 Missense_Mutation p.R562W 0.14 deleterious(0.05) benign(0.023) TCGA-EE-A2MI-06 22 46765589 46765589 G A CELSR1 Silent p.I2624I 0.29 TCGA-EE-A2MI-06 22 46860109 46860109 G A CELSR1 Silent p.L1226L 0.38 TCGA-EE-A2MI-06 22 50279400 50279400 C T ZBED4 Missense_Mutation p.P697L 0.31 deleterious(0.02) benign(0.206) TCGA-EE-A2MI-06 22 51017607 51017607 G A CHKB 3'UTR 0.30 TCGA-EE-A2MI-06 22 51123077 51123077 T C SHANK3 Missense_Mutation p.V343A 0.16 probably_damaging(0.944) TCGA-EE-A2MI-06 2 100916188 100916188 G A LONRF2 Missense_Mutation p.P420S 0.25 tolerated(0.38) probably_damaging(0.996) TCGA-EE-A2MI-06 2 102818036 102818036 G A IL1RL2 Silent p.G170G 0.20 TCGA-EE-A2MI-06 2 103068513 103068513 C T IL18RAP Missense_Mutation p.H558Y 0.37 tolerated(0.07) benign(0.208) TCGA-EE-A2MI-06 2 111789215 111789215 G A ACOXL Silent p.K431K 0.36 TCGA-EE-A2MI-06 2 112761519 112761519 G A MERTK Missense_Mutation p.E609K 0.19 tolerated(0.33) benign(0.068) TCGA-EE-A2MI-06 2 113089501 113089501 C T ZC3H6 Silent p.N1002N 0.32 TCGA-EE-A2MI-06 2 113786542 113786542 G A IL36B Nonsense_Mutation p.Q79* 0.34 TCGA-EE-A2MI-06 2 116447288 116447288 C T DPP10 Missense_Mutation p.S160L 0.75 tolerated(0.54) benign(0.317) TCGA-EE-A2MI-06 2 121685022 121685022 T A GLI2 Missense_Mutation p.H78Q 0.27 deleterious(0.04) possibly_damaging(0.889) TCGA-EE-A2MI-06 2 121746665 121746665 G A GLI2 Missense_Mutation p.D1059N 0.26 tolerated(0.06) possibly_damaging(0.454) TCGA-EE-A2MI-06 2 1271191 1271191 G A SNTG2 Missense_Mutation p.D378N 0.27 deleterious(0.05) benign(0.004) TCGA-EE-A2MI-06 2 128015101 128015101 T C ERCC3 3'UTR 0.32 TCGA-EE-A2MI-06 2 131976336 131976336 G A POTEE Missense_Mutation p.G121R 0.27 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-EE-A2MI-06 2 132289353 132289353 C T CCDC74A Missense_Mutation p.P221S 0.30 tolerated(0.32) benign(0.227) TCGA-EE-A2MI-06 2 136570092 136570092 G A LCT Silent p.N714N 0.33 TCGA-EE-A2MI-06 2 137988647 137988647 C T THSD7B Missense_Mutation p.P586L 0.32 tolerated(0.5) possibly_damaging(0.702) TCGA-EE-A2MI-06 2 138169301 138169301 C T THSD7B Missense_Mutation p.P940S 0.38 tolerated(0.06) possibly_damaging(0.803) TCGA-EE-A2MI-06 2 138400061 138400061 G A THSD7B Missense_Mutation p.R1271Q 0.24 tolerated(0.91) unknown(0) TCGA-EE-A2MI-06 2 138414698 138414698 G A THSD7B Nonsense_Mutation p.W1451* 0.24 TCGA-EE-A2MI-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.24 TCGA-EE-A2MI-06 2 141641501 141641501 T A LRP1B Missense_Mutation p.I1352L 0.29 benign(0.001) TCGA-EE-A2MI-06 2 143713841 143713841 C T KYNU Missense_Mutation p.H169Y 0.21 tolerated(0.12) benign(0.141) TCGA-EE-A2MI-06 2 152490301 152490301 C T NEB Missense_Mutation p.G3094E 0.30 possibly_damaging(0.47) TCGA-EE-A2MI-06 2 152727112 152727112 G A CACNB4 Missense_Mutation p.P211L 0.46 deleterious(0) possibly_damaging(0.548) TCGA-EE-A2MI-06 2 155711613 155711613 G A KCNJ3 Missense_Mutation p.D432N 0.25 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-EE-A2MI-06 2 162875264 162875264 C T DPP4 Silent p.A465A 0.21 TCGA-EE-A2MI-06 2 163302691 163302691 A T KCNH7 Missense_Mutation p.I464K 0.21 deleterious(0) probably_damaging(0.953) TCGA-EE-A2MI-06 2 165548907 165548907 C T COBLL1 Missense_Mutation p.E1080K 0.24 tolerated(1) benign(0.028) TCGA-EE-A2MI-06 2 165551054 165551054 G A COBLL1 Missense_Mutation p.P988S 0.27 tolerated(0.06) benign(0.051) TCGA-EE-A2MI-06 2 166003341 166003341 C T SCN3A Missense_Mutation p.E527K 0.23 deleterious(0.04) benign(0.134) TCGA-EE-A2MI-06 2 166210824 166210824 C T SCN2A Silent p.I1014I 0.33 TCGA-EE-A2MI-06 2 166245738 166245738 G A SCN2A Missense_Mutation p.D1808N 0.34 deleterious(0.02) benign(0.023) TCGA-EE-A2MI-06 2 166805844 166805844 A T TTC21B Intron 0.33 TCGA-EE-A2MI-06 2 166904164 166904164 C T SCN1A Silent p.Q381Q 0.24 TCGA-EE-A2MI-06 2 166929996 166929996 C T SCN1A Missense_Mutation p.E46K 0.28 tolerated(0.07) benign(0.225) TCGA-EE-A2MI-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.24 TCGA-EE-A2MI-06 2 169487543 169487543 C T CERS6 Silent p.F152F 0.30 TCGA-EE-A2MI-06 2 169733823 169733823 C T SPC25 Missense_Mutation p.G91S 0.24 tolerated(0.38) benign(0.001) TCGA-EE-A2MI-06 2 169764716 169764716 C T G6PC2 3'Flank 0.33 TCGA-EE-A2MI-06 2 176959406 176959406 G A HOXD13 Missense_Mutation p.R327Q 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 2 178937187 178937187 C T PDE11A 5'UTR 0.39 TCGA-EE-A2MI-06 2 179398780 179398780 C T TTN Missense_Mutation p.E34188K 0.39 TCGA-EE-A2MI-06 2 179494052 179494052 C T TTN Silent p.G14800G 0.36 TCGA-EE-A2MI-06 2 179576943 179576943 G A TTN Missense_Mutation p.P9205L 0.23 TCGA-EE-A2MI-06 2 179579150 179579150 C T TTN Nonsense_Mutation p.W8784* 0.31 TCGA-EE-A2MI-06 2 179582050 179582050 C T TTN Missense_Mutation p.E8471K 0.29 TCGA-EE-A2MI-06 2 179599705 179599705 G A TTN Silent p.S4982S 0.30 TCGA-EE-A2MI-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.31 TCGA-EE-A2MI-06 2 179639101 179639101 C T TTN Missense_Mutation p.G2297E 0.24 TCGA-EE-A2MI-06 2 179640203 179640203 C T TTN Missense_Mutation p.E2130K 0.28 TCGA-EE-A2MI-06 2 179642167 179642167 G A TTN Missense_Mutation p.S1542L 0.44 TCGA-EE-A2MI-06 2 179643697 179643697 C T TTN Missense_Mutation p.G1371E 0.24 TCGA-EE-A2MI-06 2 179736919 179736919 C T CCDC141 Missense_Mutation p.A674T 0.26 tolerated(0.4) benign(0.034) TCGA-EE-A2MI-06 2 183859598 183859598 G A NCKAP1 Silent p.L259L 0.25 TCGA-EE-A2MI-06 2 186670720 186670720 G A FSIP2 Missense_Mutation p.E5652K 0.22 benign(0.028) TCGA-EE-A2MI-06 2 18765916 18765916 G A NT5C1B Missense_Mutation p.S256F 0.33 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-EE-A2MI-06 2 18765998 18765998 C T NT5C1B Missense_Mutation p.D229N 0.32 deleterious_low_confidence(0.04) benign(0.007) TCGA-EE-A2MI-06 2 189962046 189962046 C T COL5A2 Missense_Mutation p.G138E 0.27 probably_damaging(0.999) TCGA-EE-A2MI-06 2 1926949 1926949 C T MYT1L Missense_Mutation p.D198N 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 2 192701092 192701092 G A SDPR Missense_Mutation p.H279Y 0.29 deleterious(0) possibly_damaging(0.751) TCGA-EE-A2MI-06 2 192863794 192863794 C T TMEFF2 Missense_Mutation p.R226Q 0.23 tolerated(0.14) possibly_damaging(0.51) TCGA-EE-A2MI-06 2 196749415 196749415 C T DNAH7 Missense_Mutation p.R1886Q 0.26 tolerated(0.24) benign(0.001) TCGA-EE-A2MI-06 2 196891521 196891521 C T DNAH7 Missense_Mutation p.M210I 0.16 tolerated(1) benign(0.001) TCGA-EE-A2MI-06 2 198570826 198570826 A G MARS2 Missense_Mutation p.I233V 0.26 tolerated(0.64) benign(0.098) TCGA-EE-A2MI-06 2 201681923 201681923 C T BZW1 Missense_Mutation p.S198F 0.23 deleterious(0) benign(0.005) TCGA-EE-A2MI-06 2 202073798 202073798 C T CASP10 Silent p.L310L 0.37 TCGA-EE-A2MI-06 2 202593243 202593243 G A ALS2 Missense_Mutation p.H945Y 0.37 deleterious(0) possibly_damaging(0.797) TCGA-EE-A2MI-06 2 203149091 203149091 C T NOP58 Silent p.I107I 0.38 TCGA-EE-A2MI-06 2 203762097 203762097 G A WDR12 Missense_Mutation p.S127F 0.29 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MI-06 2 207175466 207175466 G A ZDBF2 Missense_Mutation p.E2072K 0.41 deleterious(0.05) benign(0.292) TCGA-EE-A2MI-06 2 20838367 20838367 G A HS1BP3 Missense_Mutation p.S151F 0.36 tolerated(0.11) benign(0.024) TCGA-EE-A2MI-06 2 209184997 209184997 C T PIKFYVE Missense_Mutation p.P702S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 2 211447396 211447396 C A CPS1 Missense_Mutation p.P201Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MI-06 2 21229685 21229685 G A APOB Missense_Mutation p.T3352I 0.28 probably_damaging(0.991) TCGA-EE-A2MI-06 2 21231675 21231675 G A APOB Missense_Mutation p.P2689S 0.31 probably_damaging(0.996) TCGA-EE-A2MI-06 2 21234537 21234537 C T APOB Missense_Mutation p.G1735R 0.35 probably_damaging(0.999) TCGA-EE-A2MI-06 2 214727214 214727214 C G SPAG16 Missense_Mutation p.S359C 0.26 tolerated(0.05) possibly_damaging(0.447) TCGA-EE-A2MI-06 2 215845258 215845258 G A ABCA12 Silent p.Y1563Y 0.32 TCGA-EE-A2MI-06 2 215884434 215884434 C T ABCA12 Missense_Mutation p.M458I 0.30 tolerated(0.49) benign(0) TCGA-EE-A2MI-06 2 219746962 219746962 C T WNT10A Missense_Mutation p.P65S 0.34 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2MI-06 2 219870227 219870227 G A CCDC108 Silent p.S1660S 0.20 TCGA-EE-A2MI-06 2 223554078 223554078 C T MOGAT1 Missense_Mutation p.S123F 0.52 deleterious(0) possibly_damaging(0.447) TCGA-EE-A2MI-06 2 228137770 228137770 G A COL4A3 Missense_Mutation p.G622R 0.21 unknown(0) TCGA-EE-A2MI-06 2 228137771 228137771 G A COL4A3 Missense_Mutation p.G622E 0.23 unknown(0) TCGA-EE-A2MI-06 2 228884867 228884867 C T SPHKAP Missense_Mutation p.E235K 0.32 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MI-06 2 230282920 230282920 C T DNER Missense_Mutation p.E505K 0.17 deleterious(0.01) benign(0.197) TCGA-EE-A2MI-06 2 231775585 231775585 G A GPR55 Silent p.F31F 0.36 TCGA-EE-A2MI-06 2 233344823 233344823 C T ECEL1 3'UTR 0.37 TCGA-EE-A2MI-06 2 233944049 233944049 C T INPP5D Missense_Mutation p.R47W 0.30 deleterious(0) possibly_damaging(0.886) TCGA-EE-A2MI-06 2 234106748 234106748 C T INPP5D Missense_Mutation p.P889S 0.24 tolerated(0.16) benign(0.008) TCGA-EE-A2MI-06 2 237076349 237076349 C T GBX2 Missense_Mutation p.G89D 0.43 tolerated(0.1) benign(0.346) TCGA-EE-A2MI-06 2 238275439 238275439 G A COL6A3 Silent p.F1797F 0.23 TCGA-EE-A2MI-06 2 241682373 241682373 G A KIF1A Missense_Mutation p.P1205S 0.29 deleterious(0.01) benign(0.046) TCGA-EE-A2MI-06 2 25972779 25972779 G A ASXL2 Missense_Mutation p.T549I 0.26 tolerated(0.12) benign(0.005) TCGA-EE-A2MI-06 2 26739411 26739411 C T OTOF Nonsense_Mutation p.W128* 0.32 TCGA-EE-A2MI-06 2 27361021 27361021 G A C2orf53 Silent p.P59P 0.11 TCGA-EE-A2MI-06 2 29295755 29295755 G A C2orf71 Missense_Mutation p.S458F 0.24 deleterious(0) possibly_damaging(0.745) TCGA-EE-A2MI-06 2 31133921 31133921 C T GALNT14 Nonsense_Mutation p.W507* 0.34 TCGA-EE-A2MI-06 2 31621561 31621561 C T XDH Missense_Mutation p.R104K 0.30 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2MI-06 2 33525604 33525604 G A LTBP1 Missense_Mutation p.G1108R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 2 3504598 3504598 G A ADI1 Missense_Mutation p.T136M 0.30 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MI-06 2 38178549 38178549 T C RMDN2 Missense_Mutation p.L64S 0.28 tolerated_low_confidence(0.24) possibly_damaging(0.856) TCGA-EE-A2MI-06 2 50779811 50779811 G A NRXN1 Missense_Mutation p.S598L 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 2 60688266 60688266 G A BCL11A Missense_Mutation p.S594L 0.33 tolerated(0.43) benign(0.041) TCGA-EE-A2MI-06 2 74763204 74763204 C G LOXL3 Missense_Mutation p.K389N 0.34 tolerated(0.23) benign(0.263) TCGA-EE-A2MI-06 2 74889939 74889939 A C SEMA4F Silent p.A179A 0.18 TCGA-EE-A2MI-06 2 89475938 89475938 G A IGKV2-24 Silent p.N78N 0.30 TCGA-EE-A2MI-06 3 102183090 102183090 C T ZPLD1 Silent p.F268F 0.24 TCGA-EE-A2MI-06 3 105400694 105400694 G A CBLB Intron 0.24 TCGA-EE-A2MI-06 3 107096458 107096458 G A CCDC54 Silent p.R8R 0.29 TCGA-EE-A2MI-06 3 108780899 108780899 G A MORC1 Missense_Mutation p.S301F 0.35 tolerated(0.37) benign(0) TCGA-EE-A2MI-06 3 109026926 109026926 G A DPPA2 Missense_Mutation p.S204L 0.11 tolerated(0.08) benign(0.003) TCGA-EE-A2MI-06 3 109049624 109049624 C T DPPA4 Silent p.R142R 0.27 TCGA-EE-A2MI-06 3 113677465 113677465 G A ZDHHC23 Intron 0.42 TCGA-EE-A2MI-06 3 119367478 119367478 G A POPDC2 Missense_Mutation p.S213F 0.30 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MI-06 3 119536083 119536083 C T NR1I2 3'UTR 0.15 TCGA-EE-A2MI-06 3 120924817 120924817 C T STXBP5L Missense_Mutation p.L309F 0.30 tolerated(0.52) probably_damaging(1) TCGA-EE-A2MI-06 3 121100148 121100148 G A STXBP5L Missense_Mutation p.E810K 0.27 tolerated(0.07) probably_damaging(0.913) TCGA-EE-A2MI-06 3 121976156 121976156 G A CASR Silent p.T138T 0.32 TCGA-EE-A2MI-06 3 121980978 121980978 G A CASR Missense_Mutation p.G366R 0.16 tolerated(0.06) benign(0.006) TCGA-EE-A2MI-06 3 122126248 122126248 T C FAM162A Intron 0.13 TCGA-EE-A2MI-06 3 123019094 123019094 G A ADCY5 Silent p.L925L 0.22 TCGA-EE-A2MI-06 3 124449234 124449234 G A UMPS 5'UTR 0.32 TCGA-EE-A2MI-06 3 12574301 12574301 C T TSEN2 3'UTR 0.26 TCGA-EE-A2MI-06 3 12790243 12790243 G A TMEM40 Missense_Mutation p.S41F 0.31 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-EE-A2MI-06 3 128976410 128976410 C T COPG1 Missense_Mutation p.P226L 0.31 deleterious(0.02) benign(0.35) TCGA-EE-A2MI-06 3 130287413 130287413 A G COL6A6 Missense_Mutation p.D789G 0.33 tolerated(0.1) possibly_damaging(0.771) TCGA-EE-A2MI-06 3 130311941 130311941 G A COL6A6 Missense_Mutation p.G1470R 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 3 131404763 131404763 G A CPNE4 Missense_Mutation p.R183C 0.39 deleterious(0.02) possibly_damaging(0.817) TCGA-EE-A2MI-06 3 134851570 134851570 C T EPHB1 Missense_Mutation p.P326S 0.21 deleterious(0) possibly_damaging(0.764) TCGA-EE-A2MI-06 3 142188402 142188402 G A ATR Missense_Mutation p.S2110F 0.22 deleterious(0.04) benign(0.188) TCGA-EE-A2MI-06 3 14814406 14814406 G A C3orf20 3'UTR 0.24 TCGA-EE-A2MI-06 3 148924025 148924025 C T CP Missense_Mutation p.E380K 0.26 tolerated(0.24) benign(0.357) TCGA-EE-A2MI-06 3 149040220 149040220 G A TM4SF18 Silent p.F138F 0.38 TCGA-EE-A2MI-06 3 15057667 15057667 G A NR2C2 Silent p.T113T 0.26 TCGA-EE-A2MI-06 3 15057668 15057668 G A NR2C2 Missense_Mutation p.D114N 0.27 tolerated(0.09) benign(0.001) TCGA-EE-A2MI-06 3 15115534 15115534 G A ZFYVE20 Missense_Mutation p.P704S 0.34 tolerated_low_confidence(0.28) benign(0.012) TCGA-EE-A2MI-06 3 154886527 154886527 G A MME Missense_Mutation p.G641R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 3 155200524 155200524 C T PLCH1 Silent p.V1105V 0.26 TCGA-EE-A2MI-06 3 160395299 160395299 A G ARL14 Silent p.E55E 0.25 TCGA-EE-A2MI-06 3 16268951 16268951 G A GALNT15 Missense_Mutation p.G622R 0.36 tolerated(0.1) probably_damaging(0.987) TCGA-EE-A2MI-06 3 169710486 169710486 A G SEC62 Missense_Mutation p.R279G 0.31 tolerated(0.1) unknown(0) TCGA-EE-A2MI-06 3 17052090 17052090 G A PLCL2 Missense_Mutation p.D292N 0.41 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A2MI-06 3 17052138 17052138 C T PLCL2 Missense_Mutation p.H308Y 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 3 17052594 17052594 G A PLCL2 Missense_Mutation p.E460K 0.28 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MI-06 3 170912390 170912390 G A TNIK Missense_Mutation p.T114I 0.35 deleterious(0) unknown(0) TCGA-EE-A2MI-06 3 183859858 183859858 G A EIF2B5 Silent p.Q434Q 0.33 TCGA-EE-A2MI-06 3 185983042 185983042 G A DGKG Silent p.V421V 0.26 TCGA-EE-A2MI-06 3 186038225 186038225 G A DGKG Silent p.S8S 0.26 TCGA-EE-A2MI-06 3 186760883 186760883 C T ST6GAL1 Missense_Mutation p.P131L 0.30 benign(0.009) TCGA-EE-A2MI-06 3 189526315 189526315 G A TP63 Silent p.T193T 0.38 TCGA-EE-A2MI-06 3 190026182 190026182 G A CLDN1 Missense_Mutation p.L174F 0.18 deleterious(0.02) possibly_damaging(0.472) TCGA-EE-A2MI-06 3 190167607 190167607 G A TMEM207 5'UTR 0.28 TCGA-EE-A2MI-06 3 193029616 193029616 A G ATP13A5 Silent p.L812L 0.48 TCGA-EE-A2MI-06 3 193081082 193081082 G A ATP13A5 Silent p.S109S 0.17 TCGA-EE-A2MI-06 3 21606068 21606068 C T ZNF385D Missense_Mutation p.D92N 0.32 tolerated(0.07) possibly_damaging(0.476) TCGA-EE-A2MI-06 3 24164584 24164584 C T THRB Missense_Mutation p.E393K 0.29 deleterious(0.03) possibly_damaging(0.807) TCGA-EE-A2MI-06 3 24169236 24169236 C T THRB Missense_Mutation p.D300N 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MI-06 3 2928860 2928860 G A CNTN4 Missense_Mutation p.E298K 0.17 deleterious(0.01) benign(0.138) TCGA-EE-A2MI-06 3 3072565 3072565 C T CNTN4 Silent p.I563I 0.28 TCGA-EE-A2MI-06 3 32931959 32931959 C T TRIM71 Silent p.V421V 0.18 TCGA-EE-A2MI-06 3 36484998 36484998 C T STAC Missense_Mutation p.P85L 0.32 deleterious(0.02) benign(0.002) TCGA-EE-A2MI-06 3 38289197 38289197 C T OXSR1 Silent p.I432I 0.26 TCGA-EE-A2MI-06 3 38751002 38751002 G A SCN10A Silent p.V1416V 0.19 TCGA-EE-A2MI-06 3 38768199 38768199 G A SCN10A Silent p.V995V 0.46 TCGA-EE-A2MI-06 3 38798227 38798227 C T SCN10A Missense_Mutation p.E410K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 3 38798279 38798279 G A SCN10A Silent p.I392I 0.20 TCGA-EE-A2MI-06 3 38835276 38835276 C T SCN10A Missense_Mutation p.G76R 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 3 38889158 38889158 G A SCN11A Missense_Mutation p.A1468V 0.20 tolerated(0.07) benign(0.143) TCGA-EE-A2MI-06 3 42906687 42906687 C T ACKR2 Silent p.S231S 0.25 TCGA-EE-A2MI-06 3 45127293 45127293 G A CDCP1 Missense_Mutation p.A783V 0.24 tolerated(0.2) benign(0.019) TCGA-EE-A2MI-06 3 46399427 46399427 G A CCR2 Missense_Mutation p.D137N 0.33 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MI-06 3 46542317 46542317 G A RTP3 Silent p.R209R 0.36 TCGA-EE-A2MI-06 3 4706914 4706914 C T ITPR1 Silent p.F534F 0.22 TCGA-EE-A2MI-06 3 48618556 48618556 G A COL7A1 Missense_Mutation p.P1645L 0.31 unknown(0) TCGA-EE-A2MI-06 3 49008031 49008034 CATT ATC ARIH2 Frame_Shift_Del p.H222Ifs*106 0.17 TCGA-EE-A2MI-06 3 49878425 49878425 C T TRAIP Missense_Mutation p.R233K 0.25 tolerated(0.23) benign(0.001) TCGA-EE-A2MI-06 3 49928029 49928029 G A MST1R Silent p.I1233I 0.28 TCGA-EE-A2MI-06 3 49947860 49947860 G A MON1A Silent p.S454S 0.44 TCGA-EE-A2MI-06 3 50220340 50220340 G A SEMA3F Missense_Mutation p.D303N 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 3 51864793 51864793 C T IQCF3 Silent p.F147F 0.30 TCGA-EE-A2MI-06 3 52643747 52643747 T A PBRM1 Nonsense_Mutation p.K717* 0.31 TCGA-EE-A2MI-06 3 52649472 52649472 C T PBRM1 Missense_Mutation p.V607I 0.19 tolerated(0.61) benign(0.088) TCGA-EE-A2MI-06 3 52649473 52649473 C T PBRM1 Splice_Site p.X607_splice 0.19 TCGA-EE-A2MI-06 3 54676174 54676174 G A CACNA2D3 Missense_Mutation p.G358E 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 3 56330430 56330430 C T ERC2 Missense_Mutation p.E231K 0.29 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MI-06 3 58271159 58271159 C T ABHD6 Silent p.I272I 0.23 TCGA-EE-A2MI-06 3 58519835 58519835 C T ACOX2 Missense_Mutation p.V121I 0.28 tolerated(0.46) benign(0.011) TCGA-EE-A2MI-06 3 68587994 68587994 G A FAM19A1 Nonsense_Mutation p.W116* 0.24 TCGA-EE-A2MI-06 3 85851313 85851313 G A CADM2 Missense_Mutation p.A62T 0.37 deleterious(0.02) possibly_damaging(0.832) TCGA-EE-A2MI-06 3 8787421 8787421 G A CAV3 Silent p.K108K 0.31 TCGA-EE-A2MI-06 3 97851821 97851821 C T OR5H1 Missense_Mutation p.L94F 0.26 tolerated(0.14) benign(0.011) TCGA-EE-A2MI-06 3 97983363 97983363 C T OR5H6 Missense_Mutation p.L79F 0.38 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MI-06 3 97983875 97983875 G A OR5H6 Silent p.G249G 0.16 TCGA-EE-A2MI-06 3 9965687 9965687 C T IL17RC Missense_Mutation p.R320W 0.14 tolerated(0.13) benign(0.001) TCGA-EE-A2MI-06 4 100228924 100228924 C T ADH1B 3'UTR 0.18 TCGA-EE-A2MI-06 4 103189132 103189132 A G SLC39A8 Silent p.N315N 0.24 TCGA-EE-A2MI-06 4 104079922 104079922 C T CENPE Missense_Mutation p.R908K 0.32 benign(0) TCGA-EE-A2MI-06 4 119161732 119161732 G A NDST3 Silent p.V724V 0.40 TCGA-EE-A2MI-06 4 119951845 119951845 C T SYNPO2 Missense_Mutation p.P639S 0.27 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A2MI-06 4 126372253 126372253 T G FAT4 Missense_Mutation p.L3361R 0.31 probably_damaging(1) TCGA-EE-A2MI-06 4 126411760 126411760 G A FAT4 Missense_Mutation p.E4595K 0.33 probably_damaging(0.987) TCGA-EE-A2MI-06 4 128627808 128627808 C T INTU Missense_Mutation p.P652L 0.33 deleterious(0.01) possibly_damaging(0.527) TCGA-EE-A2MI-06 4 129120688 129120688 G A LARP1B Missense_Mutation p.E700K 0.28 deleterious(0.01) possibly_damaging(0.78) TCGA-EE-A2MI-06 4 138451129 138451129 G A PCDH18 Missense_Mutation p.S705F 0.23 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2MI-06 4 138451647 138451647 G A PCDH18 Silent p.I532I 0.25 TCGA-EE-A2MI-06 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.27 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A2MI-06 4 141317007 141317007 C T CLGN Nonsense_Mutation p.W372* 0.19 TCGA-EE-A2MI-06 4 146076605 146076605 G A OTUD4 Silent p.S212S 0.15 TCGA-EE-A2MI-06 4 146460988 146460988 G A SMAD1 Missense_Mutation p.E145K 0.29 deleterious(0.02) benign(0.406) TCGA-EE-A2MI-06 4 148968090 148968090 G A ARHGAP10 Missense_Mutation p.D639N 0.26 tolerated(0.28) possibly_damaging(0.612) TCGA-EE-A2MI-06 4 151504398 151504398 G A MAB21L2 Missense_Mutation p.E73K 0.31 deleterious(0.01) possibly_damaging(0.74) TCGA-EE-A2MI-06 4 151773485 151773485 G A LRBA Missense_Mutation p.P1126L 0.31 tolerated_low_confidence(0.52) benign(0.19) TCGA-EE-A2MI-06 4 155508061 155508061 C T FGA Missense_Mutation p.D174N 0.26 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2MI-06 4 156135434 156135434 G A NPY2R Missense_Mutation p.E115K 0.24 tolerated(0.07) benign(0.175) TCGA-EE-A2MI-06 4 157999189 157999189 T C GLRB Silent p.L5L 0.33 TCGA-EE-A2MI-06 4 158224908 158224908 G A GRIA2 Nonsense_Mutation p.W145* 0.30 TCGA-EE-A2MI-06 4 159493972 159493972 G A RXFP1 Missense_Mutation p.D58N 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MI-06 4 160273928 160273928 G A RAPGEF2 Silent p.S1158S 0.36 TCGA-EE-A2MI-06 4 165890654 165890654 C T TRIM61 Silent p.R167R 0.15 TCGA-EE-A2MI-06 4 175897249 175897249 G A ADAM29 Silent p.V191V 0.34 TCGA-EE-A2MI-06 4 177138124 177138124 G A ASB5 Missense_Mutation p.P236L 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MI-06 4 185038029 185038029 C T ENPP6 Missense_Mutation p.A279T 0.11 tolerated(0.24) benign(0.098) TCGA-EE-A2MI-06 4 185603437 185603437 C T PRIMPOL Missense_Mutation p.P348L 0.24 benign(0.003) TCGA-EE-A2MI-06 4 188924167 188924167 C T ZFP42 Missense_Mutation p.S69L 0.23 deleterious(0.05) benign(0.003) TCGA-EE-A2MI-06 4 189026057 189026057 C T TRIML2 Silent p.S23S 0.30 TCGA-EE-A2MI-06 4 20525485 20525485 C T SLIT2 Silent p.I411I 0.33 TCGA-EE-A2MI-06 4 21950252 21950252 C T KCNIP4 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.02) TCGA-EE-A2MI-06 4 2746568 2746568 G A TNIP2 Silent p.P254P 0.21 TCGA-EE-A2MI-06 4 2746569 2746569 G A TNIP2 Missense_Mutation p.P254L 0.21 deleterious(0) probably_damaging(0.919) TCGA-EE-A2MI-06 4 2831772 2831772 C T SH3BP2 Missense_Mutation p.P437L 0.22 deleterious_low_confidence(0) benign(0.197) TCGA-EE-A2MI-06 4 2831773 2831773 C T SH3BP2 Silent p.P437P 0.22 TCGA-EE-A2MI-06 4 299103 299103 C T ZNF732 5'UTR 0.24 TCGA-EE-A2MI-06 4 38775011 38775011 G A TLR10 Missense_Mutation p.P734L 0.40 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MI-06 4 39122723 39122723 C T KLHL5 3'UTR 0.34 TCGA-EE-A2MI-06 4 40936483 40936483 G A APBB2 Missense_Mutation p.P415L 0.25 tolerated(0.3) possibly_damaging(0.721) TCGA-EE-A2MI-06 4 40936484 40936484 G A APBB2 Missense_Mutation p.P415S 0.25 tolerated(0.14) benign(0.21) TCGA-EE-A2MI-06 4 41265263 41265263 C T UCHL1 Missense_Mutation p.H161Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 4 41748110 41748110 G A PHOX2B Missense_Mutation p.P220L 0.27 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A2MI-06 4 41748111 41748111 G A PHOX2B Missense_Mutation p.P220S 0.29 tolerated_low_confidence(0.28) unknown(0) TCGA-EE-A2MI-06 4 42577650 42577650 C T ATP8A1 Missense_Mutation p.E399K 0.29 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MI-06 4 42592857 42592857 G A ATP8A1 Silent p.L165L 0.36 TCGA-EE-A2MI-06 4 46930214 46930214 C T GABRA4 3'UTR 0.24 TCGA-EE-A2MI-06 4 47427930 47427930 C T GABRB1 Silent p.I440I 0.29 TCGA-EE-A2MI-06 4 47514830 47514830 A G ATP10D Silent p.L91L 0.29 TCGA-EE-A2MI-06 4 49005819 49005819 C T CWH43 Silent p.F290F 0.42 TCGA-EE-A2MI-06 4 54344801 54344801 C T LNX1 Missense_Mutation p.D532N 0.30 tolerated(0.11) benign(0.155) TCGA-EE-A2MI-06 4 55968074 55968074 G A KDR Silent p.F752F 0.33 TCGA-EE-A2MI-06 4 57350910 57350912 ATG TA SRP72 Frame_Shift_Del p.Q322Hfs*21 0.28 TCGA-EE-A2MI-06 4 59433 59433 G A ZNF595 Silent p.R38R 0.04 TCGA-EE-A2MI-06 4 68812211 68812211 C T TMPRSS11A Silent p.V30V 0.39 TCGA-EE-A2MI-06 4 70071286 70071286 C T UGT2B11 Splice_Site p.X335_splice 0.25 TCGA-EE-A2MI-06 4 70361348 70361348 G A UGT2B4 Missense_Mutation p.P78S 0.31 tolerated(0.08) possibly_damaging(0.483) TCGA-EE-A2MI-06 4 70361566 70361566 C T UGT2B4 Nonsense_Mutation p.W5* 0.24 TCGA-EE-A2MI-06 4 71201035 71201035 G A CABS1 Silent p.Q93Q 0.40 TCGA-EE-A2MI-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.22 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-EE-A2MI-06 4 71672472 71672472 C T RUFY3 3'UTR 0.15 TCGA-EE-A2MI-06 4 76928615 76928615 G A CXCL9 5'UTR 0.22 TCGA-EE-A2MI-06 4 79373339 79373339 C T FRAS1 Silent p.S2198S 0.18 TCGA-EE-A2MI-06 4 80328367 80328367 G A GK2 Missense_Mutation p.R330C 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A2MI-06 4 81123399 81123399 C T PRDM8 Silent p.F261F 0.32 TCGA-EE-A2MI-06 4 8229160 8229160 G A SH3TC1 Missense_Mutation p.R580Q 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2MI-06 4 83601897 83601897 C T SCD5 Missense_Mutation p.D178N 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 4 8375329 8375329 C T ACOX3 Missense_Mutation p.G619R 0.25 tolerated(0.1) possibly_damaging(0.702) TCGA-EE-A2MI-06 4 84377272 84377272 G A MRPS18C Silent p.K14K 0.22 TCGA-EE-A2MI-06 4 8602878 8602878 C T CPZ Silent p.T50T 0.28 TCGA-EE-A2MI-06 4 8613827 8613827 G A CPZ Missense_Mutation p.G434E 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MI-06 4 90856447 90856447 G A MMRN1 Missense_Mutation p.S539N 0.26 tolerated(0.27) benign(0.006) TCGA-EE-A2MI-06 4 94690535 94690535 C T GRID2 Silent p.S845S 0.27 TCGA-EE-A2MI-06 4 95506861 95506861 C T PDLIM5 Missense_Mutation p.L183F 0.21 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MI-06 4 96036848 96036848 C T BMPR1B Missense_Mutation p.P117S 0.19 tolerated(0.22) benign(0.002) TCGA-EE-A2MI-06 4 96256715 96256715 G A UNC5C Silent p.F64F 0.30 TCGA-EE-A2MI-06 4 98480264 98480264 G A STPG2 Missense_Mutation p.S442F 0.27 deleterious(0.01) possibly_damaging(0.797) TCGA-EE-A2MI-06 5 101631753 101631753 C T SLCO4C1 Missense_Mutation p.E72K 0.29 tolerated(0.52) benign(0.017) TCGA-EE-A2MI-06 5 11022919 11022919 G A CTNND2 Silent p.I987I 0.27 TCGA-EE-A2MI-06 5 110836693 110836693 T A STARD4 Intron 0.29 TCGA-EE-A2MI-06 5 111595649 111595649 C T EPB41L4A Missense_Mutation p.G224R 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MI-06 5 118485868 118485868 C T DMXL1 Missense_Mutation p.T1449I 0.23 tolerated(0.44) benign(0.005) TCGA-EE-A2MI-06 5 121488782 121488782 G A ZNF474 3'UTR 0.28 TCGA-EE-A2MI-06 5 1260658 1260658 C T TERT Silent p.G967G 0.34 TCGA-EE-A2MI-06 5 1260659 1260659 C T TERT Missense_Mutation p.G967E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 5 131310625 131310625 G A ACSL6 Silent p.S343S 0.22 TCGA-EE-A2MI-06 5 132535325 132535325 C T FSTL4 Missense_Mutation p.S664N 0.27 tolerated(0.36) benign(0.002) TCGA-EE-A2MI-06 5 135561043 135561043 C T TRPC7 Splice_Site p.X755_splice 0.44 TCGA-EE-A2MI-06 5 13729599 13729599 C T DNAH5 Silent p.L3944L 0.30 TCGA-EE-A2MI-06 5 137426367 137426367 G A WNT8A Missense_Mutation p.D221N 0.22 tolerated(0.36) possibly_damaging(0.886) TCGA-EE-A2MI-06 5 13751222 13751222 G A DNAH5 Nonsense_Mutation p.Q3726* 0.25 TCGA-EE-A2MI-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.25 benign(0) TCGA-EE-A2MI-06 5 13839615 13839615 G A DNAH5 Missense_Mutation p.P1911L 0.35 possibly_damaging(0.713) TCGA-EE-A2MI-06 5 13928256 13928256 C T DNAH5 Missense_Mutation p.G75E 0.20 probably_damaging(0.931) TCGA-EE-A2MI-06 5 139740441 139740441 G A SLC4A9 Nonsense_Mutation p.W116* 0.42 TCGA-EE-A2MI-06 5 140175498 140175498 G A PCDHA2 Missense_Mutation p.E317K 0.29 tolerated_low_confidence(0.33) benign(0.019) TCGA-EE-A2MI-06 5 140202658 140202658 C T PCDHA5 Missense_Mutation p.S433L 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.596) TCGA-EE-A2MI-06 5 140203619 140203619 G A PCDHA5 Silent p.R753R 0.31 TCGA-EE-A2MI-06 5 140242883 140242883 C T AC005609.1 Silent p.A31A 0.24 TCGA-EE-A2MI-06 5 140249718 140249718 G A PCDHA11 Missense_Mutation p.D344N 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MI-06 5 140480243 140480243 G A PCDHB3 Missense_Mutation p.G4R 0.24 tolerated_low_confidence(0.55) benign(0.005) TCGA-EE-A2MI-06 5 140481080 140481080 C T PCDHB3 Missense_Mutation p.H283Y 0.23 tolerated_low_confidence(0.25) benign(0.003) TCGA-EE-A2MI-06 5 140481765 140481765 G A PCDHB3 Missense_Mutation p.G511D 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MI-06 5 140503114 140503114 C T PCDHB4 Silent p.L512L 0.20 TCGA-EE-A2MI-06 5 140558451 140558451 C T PCDHB8 Missense_Mutation p.S279F 0.13 tolerated_low_confidence(0.07) benign(0.027) TCGA-EE-A2MI-06 5 140558995 140558995 C T PCDHB8 Silent p.F460F 0.14 TCGA-EE-A2MI-06 5 140711179 140711179 G A PCDHGA1 Missense_Mutation p.E310K 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MI-06 5 140795001 140795001 C T PCDHGA10 Silent p.F753F 0.24 TCGA-EE-A2MI-06 5 140810551 140810551 C T PCDHGA12 Silent p.F75F 0.32 TCGA-EE-A2MI-06 5 140870544 140870544 C T PCDHGC5 Silent p.L579L 0.22 TCGA-EE-A2MI-06 5 141052692 141052692 G A ARAP3 Silent p.F327F 0.15 TCGA-EE-A2MI-06 5 141243015 141243015 C T PCDH1 Missense_Mutation p.G961S 0.29 tolerated(0.28) probably_damaging(1) TCGA-EE-A2MI-06 5 145439502 145439502 C T SH3RF2 Silent p.T543T 0.31 TCGA-EE-A2MI-06 5 14758637 14758637 C T ANKH Silent p.T128T 0.24 TCGA-EE-A2MI-06 5 147821539 147821539 C G FBXO38 Missense_Mutation p.I1057M 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MI-06 5 148630942 148630942 C T ABLIM3 Silent p.F603F 0.42 TCGA-EE-A2MI-06 5 149901282 149901282 G A NDST1 Missense_Mutation p.D156N 0.28 deleterious(0) possibly_damaging(0.898) TCGA-EE-A2MI-06 5 150276037 150276037 G A ZNF300 Missense_Mutation p.S271F 0.29 tolerated(0.05) possibly_damaging(0.904) TCGA-EE-A2MI-06 5 150859086 150859086 C T SLC36A1 Intron 0.28 TCGA-EE-A2MI-06 5 150867846 150867846 C T SLC36A1 3'UTR 0.33 TCGA-EE-A2MI-06 5 150922197 150922197 G A FAT2 Nonsense_Mutation p.Q2831* 0.41 TCGA-EE-A2MI-06 5 154271035 154271036 AA - GEMIN5 Frame_Shift_Del p.L1343Efs*7 0.16 TCGA-EE-A2MI-06 5 156670802 156670802 G A ITK Missense_Mutation p.M410I 0.26 deleterious(0) possibly_damaging(0.895) TCGA-EE-A2MI-06 5 159781847 159781847 C T C1QTNF2 Missense_Mutation p.G103R 0.31 deleterious(0) unknown(0) TCGA-EE-A2MI-06 5 161128799 161128799 G A GABRA6 3'UTR 0.29 TCGA-EE-A2MI-06 5 161277864 161277864 C T GABRA1 Silent p.L16L 0.17 TCGA-EE-A2MI-06 5 161302643 161302643 G A GABRA1 Missense_Mutation p.G185E 0.25 deleterious(0) benign(0.195) TCGA-EE-A2MI-06 5 167642239 167642239 G A TENM2 Missense_Mutation p.G1347E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 5 176002512 176002512 C T CDHR2 Silent p.T258T 0.28 TCGA-EE-A2MI-06 5 19483617 19483617 T C CDH18 Missense_Mutation p.T559A 0.29 tolerated(0.28) benign(0.002) TCGA-EE-A2MI-06 5 22078763 22078763 G A CDH12 Missense_Mutation p.S8F 0.30 tolerated(0.7) probably_damaging(0.962) TCGA-EE-A2MI-06 5 23526679 23526679 G A PRDM9 Missense_Mutation p.M494I 0.46 tolerated(0.31) benign(0.004) TCGA-EE-A2MI-06 5 35909988 35909988 G A CAPSL Missense_Mutation p.P169S 0.20 tolerated(0.35) possibly_damaging(0.542) TCGA-EE-A2MI-06 5 35954270 35954270 G A UGT3A1 3'UTR 0.19 TCGA-EE-A2MI-06 5 35965601 35965601 C A UGT3A1 Missense_Mutation p.A244S 0.26 tolerated(0.23) possibly_damaging(0.856) TCGA-EE-A2MI-06 5 37293076 37293076 C A NUP155 Missense_Mutation p.W1314C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 5 38924671 38924671 C T OSMR Missense_Mutation p.P673L 0.16 tolerated(0.37) benign(0.01) TCGA-EE-A2MI-06 5 40843599 40843599 G A CARD6 Missense_Mutation p.G210E 0.38 tolerated(0.14) benign(0.113) TCGA-EE-A2MI-06 5 40853623 40853623 A T CARD6 Missense_Mutation p.N730I 0.22 tolerated(0.36) benign(0.025) TCGA-EE-A2MI-06 5 40853624 40853624 C T CARD6 Silent p.N730N 0.22 TCGA-EE-A2MI-06 5 41061813 41061813 G A MROH2B Silent p.F158F 0.19 TCGA-EE-A2MI-06 5 41159280 41159280 C T C6 Missense_Mutation p.R587Q 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 5 41159289 41159289 G A C6 Missense_Mutation p.S584L 0.36 tolerated(0.22) benign(0.36) TCGA-EE-A2MI-06 5 41381969 41381969 G A PLCXD3 Silent p.V257V 0.26 TCGA-EE-A2MI-06 5 41382154 41382154 G A PLCXD3 Missense_Mutation p.H196Y 0.26 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MI-06 5 41382377 41382377 G A PLCXD3 Silent p.V121V 0.30 TCGA-EE-A2MI-06 5 42565968 42565968 C T GHR Intron 0.27 TCGA-EE-A2MI-06 5 488572 488572 C A SLC9A3 Silent p.L178L 0.38 TCGA-EE-A2MI-06 5 49701641 49701641 C T EMB Missense_Mutation p.G173E 0.32 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MI-06 5 49706754 49706754 G A EMB Silent p.F143F 0.33 TCGA-EE-A2MI-06 5 5242178 5242178 G A ADAMTS16 Missense_Mutation p.G846R 0.19 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MI-06 5 55204257 55204257 G A IL31RA Intron 0.25 TCGA-EE-A2MI-06 5 60241098 60241098 G A NDUFAF2 Missense_Mutation p.D6N 0.26 tolerated(0.61) benign(0.001) TCGA-EE-A2MI-06 5 63257040 63257040 G A HTR1A Silent p.I169I 0.31 TCGA-EE-A2MI-06 5 63509989 63509989 C T RNF180 Missense_Mutation p.S279F 0.26 tolerated(0.11) benign(0.001) TCGA-EE-A2MI-06 5 65470862 65470862 C T SREK1 Missense_Mutation p.P525S 0.39 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A2MI-06 5 68709960 68709960 G - RAD17 Frame_Shift_Del p.G630Vfs*16 0.24 TCGA-EE-A2MI-06 5 68715802 68715802 G T MARVELD2 Missense_Mutation p.G197V 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MI-06 5 71739801 71739801 C T ZNF366 Missense_Mutation p.G673R 0.33 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A2MI-06 5 71756160 71756160 C T ZNF366 Silent p.R388R 0.26 TCGA-EE-A2MI-06 5 74130407 74130407 C T FAM169A Missense_Mutation p.E112K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 5 89992916 89992916 G A GPR98 Missense_Mutation p.G2703E 0.33 probably_damaging(0.981) TCGA-EE-A2MI-06 5 94134766 94134766 C T MCTP1 Nonsense_Mutation p.W836* 0.24 TCGA-EE-A2MI-06 5 96224936 96224936 T C ERAP2 Silent p.A299A 0.26 TCGA-EE-A2MI-06 6 100369011 100369011 C T MCHR2 Silent p.Q276Q 0.27 TCGA-EE-A2MI-06 6 101173462 101173462 C T ASCC3 Missense_Mutation p.D619N 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 6 106555155 106555155 G A PRDM1 Missense_Mutation p.E758K 0.20 tolerated(0.17) benign(0.097) TCGA-EE-A2MI-06 6 109773720 109773720 G A MICAL1 Missense_Mutation p.P224S 0.20 tolerated(0.09) possibly_damaging(0.882) TCGA-EE-A2MI-06 6 110514406 110514406 C T CDC40 Missense_Mutation p.H71Y 0.19 tolerated(1) benign(0.003) TCGA-EE-A2MI-06 6 110551240 110551240 A T CDC40 Missense_Mutation p.H549L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 110763835 110763835 C T SLC22A16 Silent p.R265R 0.26 TCGA-EE-A2MI-06 6 112454586 112454586 G A LAMA4 Silent p.L1221L 0.13 TCGA-EE-A2MI-06 6 112671283 112671283 G A RFPL4B Missense_Mutation p.D125N 0.16 tolerated(1) benign(0) TCGA-EE-A2MI-06 6 116263665 116263665 C T FRK Missense_Mutation p.R477Q 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 117674322 117674322 G A ROS1 Silent p.T1384T 0.21 TCGA-EE-A2MI-06 6 12122172 12122172 C T HIVEP1 Missense_Mutation p.T715I 0.11 tolerated(0.08) benign(0.221) TCGA-EE-A2MI-06 6 121615761 121615761 T C TBC1D32 Missense_Mutation p.K396E 0.23 tolerated(1) benign(0.003) TCGA-EE-A2MI-06 6 12290849 12290849 C T EDN1 5'UTR 0.26 TCGA-EE-A2MI-06 6 123369783 123369783 G A CLVS2 Missense_Mutation p.R194Q 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2MI-06 6 125112496 125112496 C T NKAIN2 Silent p.F162F 0.26 TCGA-EE-A2MI-06 6 125144426 125144426 C T NKAIN2 3'UTR 0.26 TCGA-EE-A2MI-06 6 126176442 126176442 T G NCOA7 Intron 0.64 TCGA-EE-A2MI-06 6 127796711 127796711 C T SOGA3 Silent p.S820S 0.24 TCGA-EE-A2MI-06 6 127796913 127796913 G A SOGA3 Missense_Mutation p.A753V 0.27 deleterious(0.02) possibly_damaging(0.593) TCGA-EE-A2MI-06 6 127796945 127796945 C T SOGA3 Silent p.L742L 0.25 TCGA-EE-A2MI-06 6 127912742 127912742 C T C6orf58 Missense_Mutation p.S323F 0.32 tolerated_low_confidence(0.13) unknown(0) TCGA-EE-A2MI-06 6 128291286 128291286 C T PTPRK 3'UTR 0.44 TCGA-EE-A2MI-06 6 128326357 128326357 C T PTPRK Missense_Mutation p.G789E 0.32 tolerated(0.43) benign(0.344) TCGA-EE-A2MI-06 6 129833584 129833584 G A LAMA2 Silent p.L2978L 0.26 TCGA-EE-A2MI-06 6 130370521 130370521 T A L3MBTL3 Missense_Mutation p.V66E 0.22 tolerated(0.94) probably_damaging(0.998) TCGA-EE-A2MI-06 6 130536361 130536361 C T SAMD3 Missense_Mutation p.E20K 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MI-06 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.16 TCGA-EE-A2MI-06 6 132189168 132189168 C T ENPP1 Missense_Mutation p.A392V 0.29 deleterious(0.01) benign(0.25) TCGA-EE-A2MI-06 6 132891845 132891845 G A TAAR6 Missense_Mutation p.D129N 0.21 deleterious(0.02) possibly_damaging(0.573) TCGA-EE-A2MI-06 6 133070846 133070846 A G VNN2 Silent p.P453P 0.22 TCGA-EE-A2MI-06 6 133789771 133789771 G A EYA4 Missense_Mutation p.G291E 0.23 tolerated(0.23) probably_damaging(0.996) TCGA-EE-A2MI-06 6 133789851 133789851 G A EYA4 Missense_Mutation p.G318R 0.25 tolerated(0.11) benign(0.016) TCGA-EE-A2MI-06 6 135290425 135290425 T A HBS1L Missense_Mutation p.I617F 0.19 deleterious(0.02) benign(0.038) TCGA-EE-A2MI-06 6 136888793 136888793 C T MAP3K5 Missense_Mutation p.G1246E 0.19 tolerated(0.1) benign(0.053) TCGA-EE-A2MI-06 6 138531086 138531086 G A KIAA1244 Missense_Mutation p.D87N 0.18 deleterious(0) benign(0.001) TCGA-EE-A2MI-06 6 138655883 138655883 G A KIAA1244 Missense_Mutation p.S1967N 0.27 tolerated(0.07) benign(0.005) TCGA-EE-A2MI-06 6 152542123 152542123 G A SYNE1 Nonsense_Mutation p.Q7239* 0.20 TCGA-EE-A2MI-06 6 152861132 152861132 C T SYNE1 Missense_Mutation p.R31Q 0.26 probably_damaging(0.945) TCGA-EE-A2MI-06 6 155141449 155141449 C T SCAF8 Nonsense_Mutation p.Q592* 0.27 TCGA-EE-A2MI-06 6 155732367 155732367 G A NOX3 Missense_Mutation p.T479I 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 159462504 159462504 C T TAGAP Missense_Mutation p.G120E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 160239999 160239999 C T PNLDC1 Missense_Mutation p.P416S 0.19 tolerated(0.07) benign(0.232) TCGA-EE-A2MI-06 6 161006198 161006198 C T LPA Missense_Mutation p.R1390Q 0.29 tolerated(0.39) benign(0.017) TCGA-EE-A2MI-06 6 161123340 161123340 G A PLG Missense_Mutation p.E2K 0.16 tolerated(0.11) benign(0.211) TCGA-EE-A2MI-06 6 161510469 161510469 A G MAP3K4 Missense_Mutation p.Q980R 0.20 deleterious(0.03) benign(0.437) TCGA-EE-A2MI-06 6 167585642 167585642 G A TCP10L2 Missense_Mutation p.G4S 0.29 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-EE-A2MI-06 6 170873644 170873644 C T TBP Missense_Mutation p.S170F 0.12 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MI-06 6 24301956 24301956 C T DCDC2 Missense_Mutation p.G182R 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 6 25811773 25811773 C T SLC17A1 Missense_Mutation p.G344E 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 6 26043697 26043697 C T HIST1H2BB Missense_Mutation p.M63I 0.20 deleterious_low_confidence(0.02) benign(0.039) TCGA-EE-A2MI-06 6 26091188 26091188 C T HFE Missense_Mutation p.R66C 0.49 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MI-06 6 26107822 26107822 C T HIST1H1T Missense_Mutation p.G167E 0.18 tolerated(0.21) possibly_damaging(0.562) TCGA-EE-A2MI-06 6 2783763 2783763 G A WRNIP1 Missense_Mutation p.R537Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 6 27879944 27879944 C T OR2B2 Missense_Mutation p.D52N 0.16 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MI-06 6 29713458 29713458 T C Y_RNA 5'Flank 0.23 TCGA-EE-A2MI-06 6 29796437 29796437 T C HLA-G Missense_Mutation p.L154P 0.19 deleterious_low_confidence(0) benign(0.27) TCGA-EE-A2MI-06 6 30298623 30298623 C T TRIM39 Silent p.S173S 0.15 TCGA-EE-A2MI-06 6 31323234 31323234 G A HLA-B Missense_Mutation p.T252I 0.17 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-EE-A2MI-06 6 31431486 31431486 G A HCP5 RNA 0.26 TCGA-EE-A2MI-06 6 32006290 32006290 C T CYP21A2 Missense_Mutation p.P31S 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2MI-06 6 32037995 32037995 G A TNXB Silent p.T1729T 0.25 TCGA-EE-A2MI-06 6 32169087 32169087 C T NOTCH4 Missense_Mutation p.A1316T 0.22 deleterious(0.04) possibly_damaging(0.697) TCGA-EE-A2MI-06 6 32187388 32187388 G A NOTCH4 Silent p.F497F 0.20 TCGA-EE-A2MI-06 6 32411082 32411082 G A HLA-DRA Missense_Mutation p.G150E 0.45 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MI-06 6 32798510 32798510 C T TAP2 Missense_Mutation p.R449Q 0.31 deleterious(0.04) benign(0.406) TCGA-EE-A2MI-06 6 32944031 32944031 C T BRD2 Silent p.L205L 0.25 TCGA-EE-A2MI-06 6 33134889 33134889 C T COL11A2 Silent p.G1310G 0.28 TCGA-EE-A2MI-06 6 33143458 33143458 C T COL11A2 Missense_Mutation p.G671S 0.20 probably_damaging(0.931) TCGA-EE-A2MI-06 6 33283477 33283477 G A ZBTB22 Missense_Mutation p.S406F 0.19 tolerated(0.06) possibly_damaging(0.854) TCGA-EE-A2MI-06 6 33290773 33290773 T C DAXX 5'UTR 0.35 TCGA-EE-A2MI-06 6 33752165 33752165 G A LEMD2 Silent p.L273L 0.25 TCGA-EE-A2MI-06 6 35389701 35389701 C T PPARD Silent p.F130F 0.25 TCGA-EE-A2MI-06 6 35478719 35478719 G A TULP1 Missense_Mutation p.L140F 0.44 tolerated_low_confidence(0.19) benign(0.129) TCGA-EE-A2MI-06 6 35765011 35765011 G A CLPS Missense_Mutation p.P19S 0.10 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MI-06 6 35967773 35967773 G A SLC26A8 Silent p.S147S 0.23 TCGA-EE-A2MI-06 6 38160328 38160328 G A BTBD9 Silent p.I536I 0.22 TCGA-EE-A2MI-06 6 3850849 3850849 C T FAM50B Silent p.F268F 0.19 TCGA-EE-A2MI-06 6 38805726 38805726 C T DNAH8 Silent p.F1241F 0.31 TCGA-EE-A2MI-06 6 38862567 38862567 G A DNAH8 Missense_Mutation p.A2675T 0.35 benign(0.03) TCGA-EE-A2MI-06 6 38897335 38897335 C T DNAH8 Missense_Mutation p.L3506F 0.24 probably_damaging(1) TCGA-EE-A2MI-06 6 38998124 38998124 C T DNAH8 Missense_Mutation p.H4477Y 0.26 possibly_damaging(0.6) TCGA-EE-A2MI-06 6 42196395 42196395 C T TRERF1 Silent p.K1097K 0.22 TCGA-EE-A2MI-06 6 42236163 42236163 G A TRERF1 Missense_Mutation p.P389L 0.23 tolerated_low_confidence(0.18) possibly_damaging(0.713) TCGA-EE-A2MI-06 6 46107806 46107806 A T ENPP4 Missense_Mutation p.E162D 0.21 tolerated(0.62) benign(0.012) TCGA-EE-A2MI-06 6 46190752 46190752 G A RCAN2 3'UTR 0.19 TCGA-EE-A2MI-06 6 46787402 46787402 G A MEP1A Missense_Mutation p.D173N 0.22 deleterious(0.02) possibly_damaging(0.753) TCGA-EE-A2MI-06 6 46794105 46794105 C T MEP1A Missense_Mutation p.L265F 0.21 tolerated(1) benign(0.071) TCGA-EE-A2MI-06 6 46847735 46847735 C T GPR116 Missense_Mutation p.G286R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 49668450 49668450 C T CRISP2 Silent p.R38R 0.23 TCGA-EE-A2MI-06 6 50791256 50791256 C T TFAP2B Missense_Mutation p.P73L 0.17 deleterious(0.03) benign(0.442) TCGA-EE-A2MI-06 6 52372354 52372354 A G TRAM2 Missense_Mutation p.L208S 0.46 deleterious(0) benign(0.359) TCGA-EE-A2MI-06 6 52657738 52657738 G C GSTA1 Missense_Mutation p.S154R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 6 52992942 52992942 G A GCM1 3'UTR 0.24 TCGA-EE-A2MI-06 6 54025203 54025203 G A MLIP Silent p.K241K 0.31 TCGA-EE-A2MI-06 6 54805265 54805265 C T FAM83B Missense_Mutation p.S499F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 6 54805518 54805518 C T FAM83B Silent p.T583T 0.25 TCGA-EE-A2MI-06 6 54806047 54806047 G A FAM83B Missense_Mutation p.E760K 0.16 tolerated(0.28) benign(0.043) TCGA-EE-A2MI-06 6 55214904 55214904 G A GFRAL Missense_Mutation p.D111N 0.24 tolerated(0.32) benign(0.015) TCGA-EE-A2MI-06 6 57017092 57017092 C T ZNF451 Silent p.F942F 0.11 TCGA-EE-A2MI-06 6 70963122 70963122 C T COL9A1 Missense_Mutation p.G577E 0.25 probably_damaging(1) TCGA-EE-A2MI-06 6 72967938 72967938 G A RIMS1 Missense_Mutation p.D961N 0.26 deleterious(0.01) possibly_damaging(0.69) TCGA-EE-A2MI-06 6 73951815 73951815 A G KHDC1 Silent p.C159C 0.12 TCGA-EE-A2MI-06 6 74110016 74110016 G A DDX43 Silent p.T122T 0.28 TCGA-EE-A2MI-06 6 74325154 74325154 G A SLC17A5 Missense_Mutation p.S332L 0.24 deleterious(0) benign(0.155) TCGA-EE-A2MI-06 6 74512972 74512972 G A CD109 Missense_Mutation p.E970K 0.16 tolerated(0.22) benign(0.014) TCGA-EE-A2MI-06 6 74528148 74528148 G A CD109 Missense_Mutation p.E1317K 0.13 deleterious(0.03) possibly_damaging(0.901) TCGA-EE-A2MI-06 6 7581388 7581388 G A DSP Silent p.R1655R 0.23 TCGA-EE-A2MI-06 6 83834472 83834472 C T DOPEY1 Silent p.D463D 0.21 TCGA-EE-A2MI-06 6 84117513 84117513 G A ME1 Silent p.F62F 0.29 TCGA-EE-A2MI-06 6 84233438 84233438 G A PRSS35 Missense_Mutation p.R93Q 0.17 tolerated(0.08) probably_damaging(0.948) TCGA-EE-A2MI-06 6 84303377 84303377 G A SNAP91 Missense_Mutation p.P506S 0.17 tolerated(0.18) possibly_damaging(0.641) TCGA-EE-A2MI-06 6 85466570 85466570 G A TBX18 Missense_Mutation p.S206L 0.19 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MI-06 6 96651677 96651677 C T FUT9 Missense_Mutation p.H216Y 0.25 deleterious(0.04) benign(0.098) TCGA-EE-A2MI-06 6 97587157 97587158 - A KLHL32 Frame_Shift_Ins 0.19 TCGA-EE-A2MI-06 7 102110281 102110281 G A LRWD1 Missense_Mutation p.G465D 0.26 tolerated(1) benign(0.023) TCGA-EE-A2MI-06 7 103113260 103113260 C T RELN Silent p.%3D 0.30 TCGA-EE-A2MI-06 7 103143606 103143606 G A RELN Silent p.F2782F 0.20 TCGA-EE-A2MI-06 7 106513233 106513233 T C PIK3CG Missense_Mutation p.F713L 0.27 deleterious(0.03) possibly_damaging(0.588) TCGA-EE-A2MI-06 7 107408071 107408071 C T SLC26A3 Missense_Mutation p.D742N 0.42 tolerated(0.3) benign(0.006) TCGA-EE-A2MI-06 7 107564460 107564460 C T LAMB1 Missense_Mutation p.G1766E 0.14 tolerated(1) benign(0.001) TCGA-EE-A2MI-06 7 113519234 113519234 G A PPP1R3A Missense_Mutation p.S638L 0.29 tolerated(0.11) benign(0.055) TCGA-EE-A2MI-06 7 117003787 117003787 C T ASZ1 Missense_Mutation p.E431K 0.19 tolerated(1) benign(0.001) TCGA-EE-A2MI-06 7 120382645 120382645 G A KCND2 Missense_Mutation p.E486K 0.34 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A2MI-06 7 120591176 120591176 C T ING3 Intron 0.26 TCGA-EE-A2MI-06 7 122821054 122821054 G A SLC13A1 Silent p.P67P 0.26 TCGA-EE-A2MI-06 7 123269216 123269216 G A ASB15 Missense_Mutation p.A390T 0.17 tolerated(0.28) benign(0.405) TCGA-EE-A2MI-06 7 123593715 123593715 C T SPAM1 Missense_Mutation p.P31S 0.31 tolerated(0.12) benign(0.186) TCGA-EE-A2MI-06 7 127235401 127235401 C T FSCN3 Missense_Mutation p.A62V 0.21 tolerated(0.07) possibly_damaging(0.905) TCGA-EE-A2MI-06 7 134217804 134217804 G A AKR1B10 Missense_Mutation p.G134R 0.29 deleterious(0.03) benign(0.005) TCGA-EE-A2MI-06 7 137801379 137801379 C T AKR1D1 Missense_Mutation p.P318S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MI-06 7 138312112 138312112 G A SVOPL Silent p.L388L 0.19 TCGA-EE-A2MI-06 7 140389516 140389516 C T ADCK2 Silent p.T559T 0.29 TCGA-EE-A2MI-06 7 141708471 141708471 G A MGAM Missense_Mutation p.R98Q 0.30 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A2MI-06 7 141957622 141957622 G A PRSS58 5'UTR 0.30 TCGA-EE-A2MI-06 7 142104228 142104228 G A TRBV6-9 Silent p.V79V 0.27 TCGA-EE-A2MI-06 7 142197670 142197670 G A TRBV11-2 RNA 0.21 TCGA-EE-A2MI-06 7 142197710 142197710 C T TRBV11-2 RNA 0.24 TCGA-EE-A2MI-06 7 142198033 142198033 C T TRBV11-2 RNA 0.26 TCGA-EE-A2MI-06 7 142428863 142428863 G A TRBV28 Missense_Mutation p.E75K 0.25 tolerated(0.09) benign(0.22) TCGA-EE-A2MI-06 7 142460361 142460361 G A PRSS1 Silent p.K178K 0.24 TCGA-EE-A2MI-06 7 142494277 142494277 C T TRBJ2-2 Missense_Mutation p.S12F 0.31 unknown(0) TCGA-EE-A2MI-06 7 142499643 142499643 C T TRBC2 Missense_Mutation p.S135F 0.27 tolerated(0.07) benign(0.036) TCGA-EE-A2MI-06 7 143701745 143701745 G A OR6B1 Missense_Mutation p.G219E 0.28 tolerated(0.14) benign(0.295) TCGA-EE-A2MI-06 7 144098513 144098513 C T NOBOX Missense_Mutation p.R157K 0.27 tolerated(0.09) benign(0.077) TCGA-EE-A2MI-06 7 147092827 147092827 G A CNTNAP2 Missense_Mutation p.G542E 0.26 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MI-06 7 148863293 148863293 C T ZNF398 Missense_Mutation p.P155L 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MI-06 7 149486764 149486764 G A SSPO RNA 0.36 TCGA-EE-A2MI-06 7 149497078 149497078 C T SSPO RNA 0.19 TCGA-EE-A2MI-06 7 150270001 150270001 G A GIMAP4 Silent p.K281K 0.19 TCGA-EE-A2MI-06 7 150645555 150645555 G A KCNH2 Missense_Mutation p.S890F 0.12 tolerated(0.08) benign(0.002) TCGA-EE-A2MI-06 7 150648080 150648080 G A KCNH2 Missense_Mutation p.P692S 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MI-06 7 150695756 150695756 G A NOS3 Silent p.V268V 0.30 TCGA-EE-A2MI-06 7 150718281 150718281 G A ATG9B Silent p.I319I 0.30 TCGA-EE-A2MI-06 7 151704929 151704929 G A GALNTL5 Missense_Mutation p.G309E 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 7 156589158 156589158 G - LMBR1 Frame_Shift_Del p.N117Tfs*7 0.25 TCGA-EE-A2MI-06 7 18975558 18975558 G A HDAC9 Missense_Mutation p.G977E 0.24 deleterious(0.02) benign(0.038) TCGA-EE-A2MI-06 7 20199749 20199749 C T MACC1 Missense_Mutation p.D79N 0.37 tolerated(0.57) possibly_damaging(0.798) TCGA-EE-A2MI-06 7 20431099 20431099 G A ITGB8 Missense_Mutation p.G345E 0.27 tolerated(0.28) probably_damaging(0.99) TCGA-EE-A2MI-06 7 20778753 20778753 G A ABCB5 Silent p.G1005G 0.45 TCGA-EE-A2MI-06 7 21744143 21744143 C T DNAH11 Missense_Mutation p.P2129L 0.36 probably_damaging(0.919) TCGA-EE-A2MI-06 7 21942684 21942684 G A CDCA7L Missense_Mutation p.R416W 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 7 2260644 2260644 T A MAD1L1 Intron 0.35 TCGA-EE-A2MI-06 7 30494798 30494798 G A NOD1 Missense_Mutation p.P111S 0.25 tolerated(0.07) benign(0.042) TCGA-EE-A2MI-06 7 30791851 30791851 G A INMT Missense_Mutation p.G29S 0.27 tolerated(1) benign(0) TCGA-EE-A2MI-06 7 31378226 31378226 G A NEUROD6 Silent p.P219P 0.17 TCGA-EE-A2MI-06 7 32909132 32909132 T A KBTBD2 Missense_Mutation p.H566L 0.30 tolerated(0.27) benign(0.005) TCGA-EE-A2MI-06 7 34889193 34889193 G A NPSR1 Intron 0.21 TCGA-EE-A2MI-06 7 43832342 43832342 C T BLVRA Missense_Mutation p.L95F 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MI-06 7 44560379 44560379 C T NPC1L1 Missense_Mutation p.D1041N 0.32 tolerated(0.9) benign(0.003) TCGA-EE-A2MI-06 7 45726197 45726197 C T ADCY1 Silent p.L793L 0.27 TCGA-EE-A2MI-06 7 49977183 49977183 C T ZPBP Missense_Mutation p.G333R 0.25 tolerated(0.09) probably_damaging(0.993) TCGA-EE-A2MI-06 7 53103667 53103667 C T POM121L12 Silent p.A101A 0.24 TCGA-EE-A2MI-06 7 55233114 55233114 C T EGFR Missense_Mutation p.P622S 0.25 tolerated(0.49) benign(0) TCGA-EE-A2MI-06 7 71571220 71571220 C T CALN1 Missense_Mutation p.E102K 0.22 deleterious(0) possibly_damaging(0.616) TCGA-EE-A2MI-06 7 72413768 72413768 C T POM121 Missense_Mutation p.T814I 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 7 7283232 7283232 C T C1GALT1 Silent p.L322L 0.28 TCGA-EE-A2MI-06 7 73011984 73011984 G A MLXIPL Silent p.L377L 0.30 TCGA-EE-A2MI-06 7 82546143 82546143 A C PCLO Missense_Mutation p.V3720G 0.31 unknown(0) TCGA-EE-A2MI-06 7 82785521 82785521 C T PCLO Missense_Mutation p.E146K 0.23 unknown(0) TCGA-EE-A2MI-06 7 87825875 87825875 G A ADAM22 3'UTR 0.35 TCGA-EE-A2MI-06 7 8791333 8791333 A T NXPH1 Missense_Mutation p.K250N 0.40 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MI-06 7 92730772 92730772 C T SAMD9 Missense_Mutation p.E1547K 0.36 tolerated(0.18) possibly_damaging(0.642) TCGA-EE-A2MI-06 7 92735076 92735076 T C SAMD9 Missense_Mutation p.Q112R 0.06 tolerated(0.21) benign(0.039) TCGA-EE-A2MI-06 7 92848717 92848717 C T HEPACAM2 Missense_Mutation p.G43S 0.19 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A2MI-06 7 99128970 99128970 A - ZKSCAN5 Frame_Shift_Del p.K541Nfs*52 0.26 TCGA-EE-A2MI-06 7 99955874 99955874 C T PILRB 5'UTR 0.32 TCGA-EE-A2MI-06 8 100523548 100523548 C T VPS13B Missense_Mutation p.P1506S 0.21 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MI-06 8 100847491 100847491 T C VPS13B Silent p.S3252S 0.21 TCGA-EE-A2MI-06 8 101076099 101076099 C T RGS22 Silent p.Q299Q 0.35 TCGA-EE-A2MI-06 8 102678844 102678844 C T GRHL2 Silent p.I597I 0.31 TCGA-EE-A2MI-06 8 10467708 10467708 C T RP1L1 Silent p.E1300E 0.25 TCGA-EE-A2MI-06 8 10470524 10470524 C T RP1L1 Missense_Mutation p.V362I 0.46 possibly_damaging(0.719) TCGA-EE-A2MI-06 8 105260996 105260996 C T RIMS2 Missense_Mutation p.P1182S 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MI-06 8 105361650 105361650 G A DCSTAMP Silent p.R290R 0.30 TCGA-EE-A2MI-06 8 10584016 10584016 G A SOX7 Silent p.F185F 0.15 TCGA-EE-A2MI-06 8 106814062 106814062 C T ZFPM2 Silent p.F584F 0.36 TCGA-EE-A2MI-06 8 108264107 108264107 C T ANGPT1 Missense_Mutation p.M491I 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2MI-06 8 108970434 108970434 C T RSPO2 Missense_Mutation p.G164R 0.22 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MI-06 8 118174004 118174004 C T SLC30A8 Silent p.C200C 0.27 TCGA-EE-A2MI-06 8 118174023 118174023 G A SLC30A8 Missense_Mutation p.E207K 0.29 tolerated(0.44) benign(0.011) TCGA-EE-A2MI-06 8 124267362 124267362 C T ZHX1 Silent p.L275L 0.39 TCGA-EE-A2MI-06 8 125047670 125047670 C A FER1L6 Missense_Mutation p.H813Q 0.20 tolerated(0.45) benign(0.003) TCGA-EE-A2MI-06 8 131896923 131896923 C T ADCY8 Missense_Mutation p.E666K 0.29 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2MI-06 8 132051923 132051923 G A ADCY8 Silent p.F219F 0.38 TCGA-EE-A2MI-06 8 132996524 132996524 A G EFR3A Missense_Mutation p.I572V 0.28 tolerated(0.1) benign(0.03) TCGA-EE-A2MI-06 8 133895059 133895059 G A TG Missense_Mutation p.C297Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 8 135649738 135649738 G A ZFAT Silent p.I138I 0.27 TCGA-EE-A2MI-06 8 143927901 143927901 G A GML Missense_Mutation p.G91E 0.38 tolerated(0.09) benign(0.001) TCGA-EE-A2MI-06 8 144680469 144680469 C T TIGD5 Silent p.F132F 0.25 TCGA-EE-A2MI-06 8 144940269 144940269 C T EPPK1 Missense_Mutation p.G2385S 0.03 probably_damaging(0.945) TCGA-EE-A2MI-06 8 145662289 145662289 G A TONSL Silent p.L581L 0.25 TCGA-EE-A2MI-06 8 145700562 145700562 G A FOXH1 Missense_Mutation p.S86F 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 8 15480671 15480671 G A TUSC3 Missense_Mutation p.R74Q 0.21 deleterious(0.02) benign(0.338) TCGA-EE-A2MI-06 8 2063855 2063855 G A MYOM2 Missense_Mutation p.G1095E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 8 24251642 24251642 C T ADAMDEC1 Silent p.T115T 0.25 TCGA-EE-A2MI-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.18 TCGA-EE-A2MI-06 8 24299996 24299996 C T ADAM7 Silent p.I21I 0.23 TCGA-EE-A2MI-06 8 25343351 25343351 C T CDCA2 Missense_Mutation p.S481L 0.29 deleterious(0.02) possibly_damaging(0.901) TCGA-EE-A2MI-06 8 27321459 27321459 G A CHRNA2 Silent p.S167S 0.33 TCGA-EE-A2MI-06 8 3200886 3200886 G A CSMD1 Silent p.S1187S 0.31 TCGA-EE-A2MI-06 8 32505585 32505585 T C NRG1 Intron 0.25 TCGA-EE-A2MI-06 8 3267060 3267060 G A CSMD1 Silent p.F543F 0.44 TCGA-EE-A2MI-06 8 37734739 37734739 G A RAB11FIP1 Silent p.S234S 0.34 TCGA-EE-A2MI-06 8 39691492 39691492 C T ADAM2 Silent p.G53G 0.20 TCGA-EE-A2MI-06 8 48749810 48749810 G A PRKDC Missense_Mutation p.P2574L 0.41 benign(0.005) TCGA-EE-A2MI-06 8 48962467 48962467 C A UBE2V2 Missense_Mutation p.P74T 0.21 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MI-06 8 48962468 48962468 C T UBE2V2 Missense_Mutation p.P74L 0.14 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MI-06 8 52384800 52384800 G A PXDNL Silent p.F253F 0.29 TCGA-EE-A2MI-06 8 53044558 53044558 C T ST18 Missense_Mutation p.G876R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 8 54141901 54141901 G A OPRK1 Missense_Mutation p.P367S 0.18 tolerated(0.15) benign(0.031) TCGA-EE-A2MI-06 8 54142134 54142134 G A OPRK1 Missense_Mutation p.P289L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 8 56435931 56435931 C T XKR4 Silent p.P366P 0.28 TCGA-EE-A2MI-06 8 56436558 56436558 G A XKR4 Silent p.V575V 0.28 TCGA-EE-A2MI-06 8 63978529 63978529 A G TTPA Silent p.G162G 0.25 TCGA-EE-A2MI-06 8 65527628 65527628 G A CYP7B1 Missense_Mutation p.P338S 0.24 tolerated(0.56) benign(0.003) TCGA-EE-A2MI-06 8 65528560 65528560 G A CYP7B1 Silent p.L180L 0.36 TCGA-EE-A2MI-06 8 65537059 65537059 G A CYP7B1 Missense_Mutation p.P54S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 8 68139385 68139385 G A ARFGEF1 Silent p.T1301T 0.26 TCGA-EE-A2MI-06 8 70515487 70515487 C T SULF1 Silent p.L374L 0.25 TCGA-EE-A2MI-06 8 74495023 74495023 G A STAU2 Missense_Mutation p.P402S 0.29 tolerated(0.43) benign(0.001) TCGA-EE-A2MI-06 8 75227454 75227454 C T JPH1 Missense_Mutation p.D261N 0.25 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MI-06 8 77617294 77617294 G A ZFHX4 Missense_Mutation p.G324E 0.24 probably_damaging(0.969) TCGA-EE-A2MI-06 8 77620131 77620131 G A ZFHX4 Missense_Mutation p.G981S 0.18 probably_damaging(0.931) TCGA-EE-A2MI-06 8 86240894 86240894 G A CA1 Silent p.F227F 0.33 TCGA-EE-A2MI-06 8 87242503 87242503 C T SLC7A13 Missense_Mutation p.D2N 0.34 tolerated(0.17) benign(0.094) TCGA-EE-A2MI-06 8 97332525 97332525 C T PTDSS1 Silent p.L375L 0.18 TCGA-EE-A2MI-06 9 101829170 101829170 T C COL15A1 Silent p.L1220L 0.30 TCGA-EE-A2MI-06 9 104239391 104239391 C T TMEM246 5'UTR 0.33 TCGA-EE-A2MI-06 9 106898163 106898163 A G SMC2 Intron 0.26 TCGA-EE-A2MI-06 9 107288635 107288635 C T OR13C4 Missense_Mutation p.V286I 0.27 tolerated(0.06) benign(0.068) TCGA-EE-A2MI-06 9 107361157 107361157 C T OR13C5 Missense_Mutation p.E180K 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MI-06 9 113496631 113496631 C T MUSK Silent p.I243I 0.34 TCGA-EE-A2MI-06 9 114090048 114090048 G A OR2K2 Silent p.S222S 0.28 TCGA-EE-A2MI-06 9 115973809 115973809 G A FKBP15 Silent p.F39F 0.29 TCGA-EE-A2MI-06 9 117680408 117680408 G A TNFSF8 Missense_Mutation p.P69L 0.21 tolerated(0.07) benign(0.008) TCGA-EE-A2MI-06 9 117808821 117808821 C T TNC Missense_Mutation p.E1665K 0.31 tolerated(0.07) benign(0.392) TCGA-EE-A2MI-06 9 119115177 119115177 C T PAPPA Missense_Mutation p.S1386F 0.23 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2MI-06 9 119738420 119738420 C T ASTN2 Missense_Mutation p.G524E 0.27 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MI-06 9 119903608 119903608 G A ASTN2 Intron 0.30 TCGA-EE-A2MI-06 9 119976662 119976662 T C ASTN2 Silent p.E330E 0.30 TCGA-EE-A2MI-06 9 121976057 121976057 C T BRINP1 Intron 0.26 TCGA-EE-A2MI-06 9 125330619 125330619 G A OR1L8 Silent p.I46I 0.35 TCGA-EE-A2MI-06 9 125377421 125377421 C T OR1Q1 Silent p.I135I 0.23 TCGA-EE-A2MI-06 9 125512364 125512364 C T OR1L6 Missense_Mutation p.P80S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MI-06 9 126128238 126128238 C T CRB2 Missense_Mutation p.P154L 0.24 deleterious(0) unknown(0) TCGA-EE-A2MI-06 9 131073167 131073167 T A TRUB2 Missense_Mutation p.L223F 0.32 deleterious(0) possibly_damaging(0.542) TCGA-EE-A2MI-06 9 132593232 132593232 G A C9orf78 Missense_Mutation p.R154C 0.40 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2MI-06 9 134011373 134011373 C T NUP214 Missense_Mutation p.L329F 0.37 unknown(0) TCGA-EE-A2MI-06 9 134321957 134321957 C T PRRC2B Silent p.V261V 0.36 TCGA-EE-A2MI-06 9 134321958 134321958 C T PRRC2B Nonsense_Mutation p.R262* 0.39 TCGA-EE-A2MI-06 9 134404656 134404656 A G UCK1 Silent p.L128L 0.17 TCGA-EE-A2MI-06 9 135413046 135413046 G A C9orf171 Missense_Mutation p.E231K 0.24 tolerated(0.06) possibly_damaging(0.63) TCGA-EE-A2MI-06 9 135933476 135933476 C T GTF3C5 3'UTR 0.43 TCGA-EE-A2MI-06 9 136508610 136508610 G A DBH Missense_Mutation p.D274N 0.29 tolerated(0.26) benign(0.158) TCGA-EE-A2MI-06 9 137687133 137687133 G A COL5A1 Missense_Mutation p.R924Q 0.32 unknown(0) TCGA-EE-A2MI-06 9 137708903 137708903 C T COL5A1 Missense_Mutation p.P1385L 0.26 unknown(0) TCGA-EE-A2MI-06 9 138713205 138713205 G A CAMSAP1 Missense_Mutation p.S1101F 0.24 deleterious(0) benign(0.379) TCGA-EE-A2MI-06 9 139873783 139873783 C T PTGDS Intron 0.47 TCGA-EE-A2MI-06 9 140082095 140082095 C T ANAPC2 Missense_Mutation p.G193E 0.25 tolerated(0.87) benign(0.001) TCGA-EE-A2MI-06 9 140331429 140331429 G A ENTPD8 Silent p.V149V 0.32 TCGA-EE-A2MI-06 9 140938267 140938267 G A CACNA1B Missense_Mutation p.E1110K 0.27 tolerated(0.31) benign(0.082) TCGA-EE-A2MI-06 9 14859353 14859353 C T FREM1 Silent p.A153A 0.54 TCGA-EE-A2MI-06 9 19576974 19576974 C T SLC24A2 Silent p.K392K 0.41 TCGA-EE-A2MI-06 9 33798597 33798597 G A PRSS3 Missense_Mutation p.E247K 0.05 deleterious(0.03) benign(0.094) TCGA-EE-A2MI-06 9 34306349 34306349 T C KIF24 Silent p.V238V 0.26 TCGA-EE-A2MI-06 9 5467899 5467899 C T CD274 3'UTR 0.45 TCGA-EE-A2MI-06 9 71628115 71628115 G A PRKACG Silent p.F298F 0.32 TCGA-EE-A2MI-06 9 72047517 72047517 C T APBA1 Missense_Mutation p.G793R 0.26 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A2MI-06 9 72965375 72965375 C T SMC5 Silent p.F1051F 0.31 TCGA-EE-A2MI-06 9 77339653 77339653 C T TRPM6 Missense_Mutation p.R1982K 0.30 tolerated(0.06) benign(0.011) TCGA-EE-A2MI-06 9 78784740 78784740 G A PCSK5 Silent p.R580R 0.32 TCGA-EE-A2MI-06 9 78796501 78796501 G A PCSK5 Missense_Mutation p.D731N 0.30 tolerated(0.08) benign(0.318) TCGA-EE-A2MI-06 9 78947362 78947362 G A PCSK5 Silent p.V1501V 0.21 TCGA-EE-A2MI-06 9 79890467 79890467 C T VPS13A Nonsense_Mutation p.Q856* 0.38 TCGA-EE-A2MI-06 9 79933473 79933473 C T VPS13A Missense_Mutation p.S1760F 0.31 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2MI-06 9 79936611 79936611 C T VPS13A Missense_Mutation p.H1927Y 0.23 deleterious(0.04) possibly_damaging(0.589) TCGA-EE-A2MI-06 9 80046330 80046330 G A GNA14 Missense_Mutation p.S167L 0.38 tolerated(0.07) benign(0.235) TCGA-EE-A2MI-06 9 84532180 84532180 C T SPATA31D5P RNA 0.23 TCGA-EE-A2MI-06 9 84606491 84606491 C T SPATA31D1 Missense_Mutation p.S369F 0.20 tolerated(0.17) probably_damaging(0.991) TCGA-EE-A2MI-06 9 8521361 8521361 C T PTPRD Missense_Mutation p.D293N 0.41 tolerated(0.87) probably_damaging(0.987) TCGA-EE-A2MI-06 9 8521541 8521541 G A PTPRD Missense_Mutation p.R233C 0.54 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MI-06 9 95480098 95480098 G C BICD2 Missense_Mutation p.R747G 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 9 95609601 95609601 G A ZNF484 Missense_Mutation p.H492Y 0.29 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MI-06 9 95780429 95780429 C T FGD3 Silent p.I429I 0.26 TCGA-EE-A2MI-06 9 98009753 98009753 A G FANCC Silent p.L71L 0.18 TCGA-EE-A2MI-06 9 98231303 98231303 G A PTCH1 Silent p.S660S 0.27 TCGA-EE-A2MI-06 9 99798846 99798846 C T CTSV Missense_Mutation p.G194R 0.41 tolerated(0.11) benign(0.336) TCGA-EE-A2MI-06 X 101581458 101581458 C T NXF2 3'UTR 0.24 TCGA-EE-A2MI-06 X 10176399 10176399 C T CLCN4 Silent p.P386P 0.72 TCGA-EE-A2MI-06 X 107037766 107037766 G A NCBP2L Missense_Mutation p.E106K 0.62 deleterious(0.01) benign(0.224) TCGA-EE-A2MI-06 X 107814658 107814658 C T COL4A5 Missense_Mutation p.P134S 0.49 unknown(0) TCGA-EE-A2MI-06 X 107834830 107834830 G A COL4A5 Missense_Mutation p.G460E 0.67 unknown(0) TCGA-EE-A2MI-06 X 110391071 110391071 C T PAK3 Missense_Mutation p.S164F 0.67 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MI-06 X 110544926 110544926 C T DCX Missense_Mutation p.D439N 0.61 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A2MI-06 X 114141390 114141390 C T HTR2C Silent p.F263F 0.64 TCGA-EE-A2MI-06 X 117895132 117895132 C T IL13RA1 Silent p.L236L 0.64 TCGA-EE-A2MI-06 X 118140157 118140157 C T LONRF3 Missense_Mutation p.H497Y 0.62 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MI-06 X 123663718 123663718 C T TENM1 Missense_Mutation p.G923R 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A2MI-06 X 1407503 1407503 G A CSF2RA Missense_Mutation p.G104E 0.29 tolerated(0.96) benign(0.001) TCGA-EE-A2MI-06 X 140785801 140785801 G A SPANXD Missense_Mutation p.P39S 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MI-06 X 140983092 140983092 C A MAGEC3 Missense_Mutation p.S316Y 0.53 deleterious(0.01) possibly_damaging(0.608) TCGA-EE-A2MI-06 X 140993481 140993481 G A MAGEC1 Silent p.Q97Q 0.73 TCGA-EE-A2MI-06 X 14548130 14548130 C T GLRA2 5'UTR 0.64 TCGA-EE-A2MI-06 X 148062317 148062317 G A AFF2 Missense_Mutation p.G1207E 0.65 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2MI-06 X 150832599 150832599 T C PASD1 Silent p.L284L 0.42 TCGA-EE-A2MI-06 X 150868549 150868549 G A PRRG3 Missense_Mutation p.G30D 0.70 deleterious(0.04) possibly_damaging(0.463) TCGA-EE-A2MI-06 X 151138709 151138709 G A GABRE Silent p.I74I 0.59 TCGA-EE-A2MI-06 X 151899902 151899902 G A MAGEA12 Missense_Mutation p.S300F 0.51 deleterious(0.04) benign(0.23) TCGA-EE-A2MI-06 X 152826321 152826321 C T ATP2B3 Silent p.I1009I 0.56 TCGA-EE-A2MI-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.66 TCGA-EE-A2MI-06 X 32632560 32632560 C T DMD Missense_Mutation p.V448I 0.62 possibly_damaging(0.558) TCGA-EE-A2MI-06 X 34149014 34149014 G A FAM47A Missense_Mutation p.S461F 0.62 tolerated(0.52) benign(0.001) TCGA-EE-A2MI-06 X 54496550 54496550 C T FGD1 Missense_Mutation p.E334K 0.75 tolerated(0.07) benign(0) TCGA-EE-A2MI-06 X 63410232 63410232 G A AMER1 Nonsense_Mutation p.Q979* 0.54 TCGA-EE-A2MI-06 X 73053208 73053208 T A XIST Intron 0.59 TCGA-EE-A2MI-06 X 75003415 75003415 C T MAGEE2 Missense_Mutation p.R491Q 0.56 tolerated(0.05) benign(0.001) TCGA-EE-A2MI-06 X 83129493 83129493 G A CYLC1 Missense_Mutation p.E593K 0.86 tolerated(1) benign(0.093) TCGA-EE-A2MI-06 Y 16941845 16941845 C T NLGN4Y Silent p.I349I 0.63 TCGA-EE-A2MI-06 Y 16952555 16952555 C T NLGN4Y Missense_Mutation p.P622S 0.69 tolerated(0.5) benign(0.012) TCGA-EE-A2MI-06 Y 5605943 5605943 C T PCDH11Y Missense_Mutation p.S1328F 0.68 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-EE-A2MJ-06 10 100017476 100017476 C T LOXL4 Silent p.Q397Q 0.08 TCGA-EE-A2MJ-06 10 100179853 100179853 G A HPS1 Silent p.F602F 0.10 TCGA-EE-A2MJ-06 10 100249954 100249954 C T HPSE2 Splice_Site p.X441_splice 0.15 TCGA-EE-A2MJ-06 10 101637062 101637062 C T DNMBP Missense_Mutation p.R1527Q 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 10 102257867 102257867 G A SEC31B Silent p.I594I 0.12 TCGA-EE-A2MJ-06 10 102304787 102304787 C T HIF1AN Silent p.F219F 0.08 TCGA-EE-A2MJ-06 10 102304788 102304788 C T HIF1AN Missense_Mutation p.P220S 0.08 tolerated(0.32) benign(0.077) TCGA-EE-A2MJ-06 10 102748840 102748840 C T C10orf2 Silent p.P291P 0.09 TCGA-EE-A2MJ-06 10 103987396 103987396 C T ELOVL3 Missense_Mutation p.P39S 0.14 tolerated(0.4) benign(0.035) TCGA-EE-A2MJ-06 10 104687149 104687149 A - CNNM2 Intron 0.20 TCGA-EE-A2MJ-06 10 105800840 105800840 G A COL17A1 Missense_Mutation p.S895L 0.17 possibly_damaging(0.885) TCGA-EE-A2MJ-06 10 106959853 106959853 G A SORCS3 Silent p.Q702Q 0.09 TCGA-EE-A2MJ-06 10 107012575 107012575 C T SORCS3 Missense_Mutation p.P1050S 0.16 deleterious(0.01) possibly_damaging(0.742) TCGA-EE-A2MJ-06 10 114169303 114169303 G A ACSL5 Missense_Mutation p.A247T 0.12 deleterious(0.03) probably_damaging(0.944) TCGA-EE-A2MJ-06 10 115370256 115370256 T C NRAP Missense_Mutation p.I1189V 0.17 tolerated(0.86) benign(0.241) TCGA-EE-A2MJ-06 10 115668122 115668122 C T NHLRC2 Missense_Mutation p.P670S 0.11 deleterious(0.04) probably_damaging(0.96) TCGA-EE-A2MJ-06 10 115985949 115985950 TC G TDRD1 Frame_Shift_Del p.F1050Cfs*11 0.21 TCGA-EE-A2MJ-06 10 116055900 116055900 G A AFAP1L2 Intron 0.11 TCGA-EE-A2MJ-06 10 116606378 116606378 C T FAM160B1 Missense_Mutation p.L487F 0.15 deleterious(0) possibly_damaging(0.737) TCGA-EE-A2MJ-06 10 116930804 116930804 T A ATRNL1 Missense_Mutation p.F368I 0.23 deleterious(0.05) benign(0.405) TCGA-EE-A2MJ-06 10 11805377 11805377 C T ECHDC3 Missense_Mutation p.S249F 0.13 deleterious(0) probably_damaging(0.931) TCGA-EE-A2MJ-06 10 118896121 118896121 C T VAX1 Silent p.L97L 0.12 TCGA-EE-A2MJ-06 10 122280585 122280585 C T PPAPDC1A Silent p.S141S 0.16 TCGA-EE-A2MJ-06 10 122280605 122280605 C T PPAPDC1A Missense_Mutation p.S148F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 10 122349074 122349074 A C PPAPDC1A 3'UTR 0.38 TCGA-EE-A2MJ-06 10 123970247 123970247 C T TACC2 Missense_Mutation p.P2103S 0.10 benign(0.08) TCGA-EE-A2MJ-06 10 123970533 123970533 G A TACC2 Missense_Mutation p.G2198E 0.15 benign(0.027) TCGA-EE-A2MJ-06 10 124358543 124358543 G A DMBT1 Nonsense_Mutation p.W1070* 0.08 TCGA-EE-A2MJ-06 10 124380671 124380671 G A DMBT1 Missense_Mutation p.D1666N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 10 124402787 124402787 C T DMBT1 Missense_Mutation p.S2372F 0.11 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 10 124459229 124459229 C T C10orf120 Silent p.K26K 0.11 TCGA-EE-A2MJ-06 10 124753638 124753638 C T IKZF5 Silent p.Q306Q 0.16 TCGA-EE-A2MJ-06 10 125528156 125528156 G A CPXM2 Silent p.F395F 0.14 TCGA-EE-A2MJ-06 10 125539747 125539747 C T CPXM2 Missense_Mutation p.R305Q 0.19 tolerated(0.95) benign(0.164) TCGA-EE-A2MJ-06 10 125804112 125804112 C T CHST15 Nonsense_Mutation p.W290* 0.13 TCGA-EE-A2MJ-06 10 125805347 125805347 G A CHST15 Missense_Mutation p.P128S 0.09 tolerated(0.3) benign(0.11) TCGA-EE-A2MJ-06 10 127426936 127426936 C T EDRF1 Missense_Mutation p.P635S 0.12 deleterious(0) possibly_damaging(0.455) TCGA-EE-A2MJ-06 10 12866461 12866461 C T CAMK1D Intron 0.18 TCGA-EE-A2MJ-06 10 133930844 133930844 C T JAKMIP3 Silent p.T133T 0.09 TCGA-EE-A2MJ-06 10 134158054 134158054 C T LRRC27 Silent p.F151F 0.19 TCGA-EE-A2MJ-06 10 134646941 134646941 G A TTC40 Silent p.F2346F 0.10 TCGA-EE-A2MJ-06 10 135345137 135345137 C T CYP2E1 Missense_Mutation p.S129F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MJ-06 10 15255223 15255223 G A FAM171A1 Silent p.L788L 0.24 TCGA-EE-A2MJ-06 10 16960672 16960672 G A CUBN Nonsense_Mutation p.R2317* 0.11 TCGA-EE-A2MJ-06 10 17157512 17157512 G A CUBN Silent p.V226V 0.10 TCGA-EE-A2MJ-06 10 17363164 17363164 G A ST8SIA6 Silent p.L304L 0.14 TCGA-EE-A2MJ-06 10 18834941 18834941 C A NSUN6 Missense_Mutation p.R444I 0.11 tolerated(0.22) benign(0) TCGA-EE-A2MJ-06 10 20466004 20466004 G A PLXDC2 Silent p.V320V 0.10 TCGA-EE-A2MJ-06 10 25288372 25288372 C T ENKUR Missense_Mutation p.D61N 0.16 tolerated(0.9) benign(0.003) TCGA-EE-A2MJ-06 10 25314037 25314037 A C THNSL1 Missense_Mutation p.N629H 0.17 tolerated(0.61) benign(0.002) TCGA-EE-A2MJ-06 10 25314038 25314038 A T THNSL1 Missense_Mutation p.N629I 0.16 tolerated(0.14) benign(0.36) TCGA-EE-A2MJ-06 10 27539447 27539447 C T RP11-85G18.6 RNA 0.12 TCGA-EE-A2MJ-06 10 28224025 28224025 C T ARMC4 Silent p.V803V 0.21 TCGA-EE-A2MJ-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.09 tolerated(0.05) possibly_damaging(0.691) TCGA-EE-A2MJ-06 10 30315234 30315234 G A KIAA1462 Silent p.S1281S 0.14 TCGA-EE-A2MJ-06 10 31815838 31815838 G A ZEB1 Silent p.S1008S 0.16 TCGA-EE-A2MJ-06 10 37508709 37508709 C T ANKRD30A Missense_Mutation p.L1301F 0.27 tolerated(0.12) possibly_damaging(0.86) TCGA-EE-A2MJ-06 10 43287155 43287155 T C BMS1 Silent p.I239I 0.09 TCGA-EE-A2MJ-06 10 43312814 43312814 G A BMS1 Missense_Mutation p.E818K 0.29 tolerated(0.08) benign(0.07) TCGA-EE-A2MJ-06 10 44871446 44871446 T A CXCL12 3'Flank 0.07 TCGA-EE-A2MJ-06 10 44871460 44871460 A C CXCL12 3'Flank 0.07 TCGA-EE-A2MJ-06 10 45798916 45798916 G A OR13A1 Missense_Mutation p.L319F 0.12 tolerated(0.22) benign(0.053) TCGA-EE-A2MJ-06 10 46121878 46121878 T C ZFAND4 Missense_Mutation p.S465G 0.12 deleterious(0.03) benign(0.01) TCGA-EE-A2MJ-06 10 47087077 47087077 C T NPY4R Silent p.T98T 0.11 TCGA-EE-A2MJ-06 10 48388700 48388700 G A RBP3 Silent p.L726L 0.11 TCGA-EE-A2MJ-06 10 48388840 48388840 C T RBP3 Missense_Mutation p.E680K 0.10 deleterious(0.03) benign(0.292) TCGA-EE-A2MJ-06 10 48390628 48390628 C T RBP3 Missense_Mutation p.D84N 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 10 48426663 48426663 C T GDF10 Missense_Mutation p.M448I 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 10 48428707 48428707 C T GDF10 Nonsense_Mutation p.W393* 0.11 TCGA-EE-A2MJ-06 10 48429372 48429372 G A GDF10 Silent p.L172L 0.13 TCGA-EE-A2MJ-06 10 49386156 49386156 G A FRMPD2 Silent p.I943I 0.20 TCGA-EE-A2MJ-06 10 50121367 50121367 G A LRRC18 Intron 0.11 TCGA-EE-A2MJ-06 10 50531167 50531167 C T C10orf71 Silent p.L193L 0.16 TCGA-EE-A2MJ-06 10 5138605 5138605 C T AKR1C3 Missense_Mutation p.P30S 0.15 tolerated(0.05) benign(0.014) TCGA-EE-A2MJ-06 10 51464844 51464844 C T AGAP7 Missense_Mutation p.E538K 0.06 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2MJ-06 10 52005073 52005073 G A ASAH2 Missense_Mutation p.T90I 0.19 deleterious_low_confidence(0.05) benign(0.009) TCGA-EE-A2MJ-06 10 52071170 52071170 G A SGMS1 Silent p.F249F 0.19 TCGA-EE-A2MJ-06 10 52569699 52569699 C T A1CF Missense_Mutation p.D530N 0.12 tolerated(0.5) benign(0.102) TCGA-EE-A2MJ-06 10 52610545 52610545 C T A1CF Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MJ-06 10 53458049 53458049 G A CSTF2T Missense_Mutation p.R421C 0.14 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2MJ-06 10 54040623 54040623 A T PRKG1 Missense_Mutation p.K493I 0.09 tolerated(0.06) possibly_damaging(0.578) TCGA-EE-A2MJ-06 10 55698693 55698693 G A PCDH15 Silent p.I1085I 0.17 TCGA-EE-A2MJ-06 10 61112072 61112072 G A FAM13C Silent p.S94S 0.11 TCGA-EE-A2MJ-06 10 61828894 61828894 C T ANK3 Silent p.V3915V 0.10 TCGA-EE-A2MJ-06 10 61831712 61831712 G A ANK3 Missense_Mutation p.P2976L 0.14 benign(0.002) TCGA-EE-A2MJ-06 10 61847990 61847990 C T ANK3 Missense_Mutation p.G1152E 0.13 probably_damaging(1) TCGA-EE-A2MJ-06 10 64022525 64022525 C T RTKN2 Nonsense_Mutation p.W39* 0.34 TCGA-EE-A2MJ-06 10 64022544 64022544 G A RTKN2 Nonsense_Mutation p.R33* 0.12 TCGA-EE-A2MJ-06 10 6472820 6472820 C T PRKCQ Nonsense_Mutation p.W639* 0.16 TCGA-EE-A2MJ-06 10 64967070 64967070 T C JMJD1C Silent p.T1453T 0.22 TCGA-EE-A2MJ-06 10 64975342 64975342 G A JMJD1C Missense_Mutation p.R265C 0.09 tolerated(0.05) benign(0.081) TCGA-EE-A2MJ-06 10 68687059 68687059 T C LRRTM3 Missense_Mutation p.F129L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 10 68688165 68688165 G A LRRTM3 Silent p.G497G 0.13 TCGA-EE-A2MJ-06 10 69366628 69366628 T G CTNNA3 Missense_Mutation p.E93D 0.09 tolerated(0.97) possibly_damaging(0.523) TCGA-EE-A2MJ-06 10 70332849 70332849 T G TET1 Missense_Mutation p.F252V 0.14 tolerated(0.06) benign(0.001) TCGA-EE-A2MJ-06 10 70673321 70673321 C T DDX50 Missense_Mutation p.S311F 0.13 deleterious(0.01) benign(0.038) TCGA-EE-A2MJ-06 10 72468481 72468481 C T ADAMTS14 Missense_Mutation p.R273C 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 10 73044576 73044576 C T UNC5B Missense_Mutation p.S135F 0.29 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MJ-06 10 73050839 73050839 C T UNC5B Missense_Mutation p.P423S 0.13 tolerated(0.26) possibly_damaging(0.486) TCGA-EE-A2MJ-06 10 74673144 74673144 C T OIT3 Missense_Mutation p.T290I 0.12 tolerated(0.24) benign(0.02) TCGA-EE-A2MJ-06 10 74684185 74684185 C T OIT3 Missense_Mutation p.H384Y 0.19 tolerated(1) benign(0.217) TCGA-EE-A2MJ-06 10 74894572 74894572 C T ECD Splice_Site p.X602_splice 0.23 TCGA-EE-A2MJ-06 10 75187441 75187441 G A MSS51 Nonsense_Mutation p.R103* 0.10 TCGA-EE-A2MJ-06 10 75302567 75302567 G A USP54 Missense_Mutation p.S189F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 10 75397643 75397643 C T MYOZ1 Silent p.K37K 0.12 TCGA-EE-A2MJ-06 10 75550009 75550009 G C ZSWIM8 Missense_Mutation p.K300N 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MJ-06 10 7659243 7659243 C T ITIH5 Missense_Mutation p.D219N 0.20 tolerated(0.14) benign(0.03) TCGA-EE-A2MJ-06 10 7759688 7759688 G A ITIH2 Silent p.R189R 0.09 TCGA-EE-A2MJ-06 10 7762837 7762837 G A ITIH2 Missense_Mutation p.E217K 0.11 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2MJ-06 10 7763737 7763737 G A ITIH2 Silent p.L288L 0.13 TCGA-EE-A2MJ-06 10 7772024 7772024 G A ITIH2 Silent p.K463K 0.09 TCGA-EE-A2MJ-06 10 8007232 8007232 C T TAF3 Missense_Mutation p.P587S 0.09 tolerated_low_confidence(0.22) probably_damaging(0.968) TCGA-EE-A2MJ-06 10 81192458 81192458 G A ZCCHC24 Silent p.I101I 0.15 TCGA-EE-A2MJ-06 10 84733607 84733607 G A NRG3 Missense_Mutation p.G450S 0.12 tolerated(0.41) benign(0.034) TCGA-EE-A2MJ-06 10 87362151 87362151 G A GRID1 Missense_Mutation p.S970L 0.11 deleterious_low_confidence(0) benign(0.118) TCGA-EE-A2MJ-06 10 88451783 88451783 T C LDB3 Missense_Mutation p.S342P 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MJ-06 10 88702993 88702993 C T MMRN2 Silent p.E516E 0.22 TCGA-EE-A2MJ-06 10 88703674 88703674 A G MMRN2 Silent p.L289L 0.25 TCGA-EE-A2MJ-06 10 90429633 90429633 C T LIPF Silent p.I164I 0.09 TCGA-EE-A2MJ-06 10 94454565 94454565 G A HHEX 3'UTR 0.13 TCGA-EE-A2MJ-06 10 95147663 95147663 C T MYOF Missense_Mutation p.G530E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 10 95147664 95147664 C T MYOF Missense_Mutation p.G530R 0.09 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MJ-06 10 95400221 95400221 G A PDE6C Nonsense_Mutation p.W548* 0.09 TCGA-EE-A2MJ-06 10 95719960 95719960 C T PIPSL RNA 0.21 TCGA-EE-A2MJ-06 10 96495040 96495040 G A CYP2C18 Missense_Mutation p.E438K 0.09 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2MJ-06 10 96698474 96698474 C T CYP2C9 Missense_Mutation p.S12L 0.17 tolerated(0.06) unknown(0) TCGA-EE-A2MJ-06 10 96701699 96701699 G A CYP2C9 Missense_Mutation p.E85K 0.07 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MJ-06 10 96731977 96731977 C T CYP2C9 Silent p.L312L 0.14 TCGA-EE-A2MJ-06 10 96798741 96798741 G A CYP2C8 Missense_Mutation p.P402S 0.11 tolerated(0.07) benign(0.128) TCGA-EE-A2MJ-06 10 99527511 99527511 C T SFRP5 Silent p.K238K 0.10 TCGA-EE-A2MJ-06 11 100221452 100221452 G A CNTN5 Missense_Mutation p.G1017D 0.40 tolerated(0.86) probably_damaging(1) TCGA-EE-A2MJ-06 11 101762035 101762035 C T ANGPTL5 Missense_Mutation p.R381K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 11 102575311 102575311 C T MMP27 Missense_Mutation p.G100S 0.23 tolerated(1) probably_damaging(0.995) TCGA-EE-A2MJ-06 11 102734972 102734972 C T MMP12 RNA 0.22 TCGA-EE-A2MJ-06 11 105880579 105880579 G - MSANTD4 Frame_Shift_Del p.R241Gfs*3 0.15 TCGA-EE-A2MJ-06 11 107403073 107403073 C T ALKBH8 Silent p.R277R 0.24 TCGA-EE-A2MJ-06 11 111414911 111414911 T C LAYN Missense_Mutation p.Y125H 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 111636043 111636043 T G PPP2R1B Silent p.R60R 0.16 TCGA-EE-A2MJ-06 11 111636044 111636044 C T PPP2R1B Missense_Mutation p.R60Q 0.16 deleterious(0.03) possibly_damaging(0.746) TCGA-EE-A2MJ-06 11 111754511 111754511 T A C11orf1 Silent p.P120P 0.25 TCGA-EE-A2MJ-06 11 112041209 112041209 C T TEX12 Missense_Mutation p.S44F 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-EE-A2MJ-06 11 112041210 112041210 C T TEX12 Silent p.S44S 0.22 TCGA-EE-A2MJ-06 11 11314705 11314705 C T GALNT18 Silent p.V516V 0.20 TCGA-EE-A2MJ-06 11 114401473 114401473 G A NXPE1 5'UTR 0.25 TCGA-EE-A2MJ-06 11 116633693 116633693 C A BUD13 Missense_Mutation p.R204S 0.18 deleterious(0) possibly_damaging(0.616) TCGA-EE-A2MJ-06 11 117859150 117859150 C T IL10RA Missense_Mutation p.H41Y 0.18 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A2MJ-06 11 118038887 118038887 C T SCN2B Missense_Mutation p.D121N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 118083240 118083240 G A AMICA1 Missense_Mutation p.P27L 0.18 tolerated(0.09) benign(0.131) TCGA-EE-A2MJ-06 11 118083241 118083241 G A AMICA1 Missense_Mutation p.P27S 0.18 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 11 118533871 118533871 C T TREH Silent p.R75R 0.20 TCGA-EE-A2MJ-06 11 119053011 119053011 C T NLRX1 Silent p.L855L 0.24 TCGA-EE-A2MJ-06 11 120979943 120979943 C T TECTA Silent p.S74S 0.27 TCGA-EE-A2MJ-06 11 122647802 122647802 C T UBASH3B Missense_Mutation p.P96S 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 11 123516315 123516315 C T SCN3B Missense_Mutation p.E67K 0.19 tolerated(1) benign(0.094) TCGA-EE-A2MJ-06 11 123676604 123676604 G A OR6M1 Silent p.L152L 0.32 TCGA-EE-A2MJ-06 11 123676792 123676792 G A OR6M1 Missense_Mutation p.T89I 0.22 deleterious(0.02) benign(0.01) TCGA-EE-A2MJ-06 11 124007759 124007759 C T VWA5A Nonsense_Mutation p.Q555* 0.15 TCGA-EE-A2MJ-06 11 124012337 124012337 C T VWA5A Missense_Mutation p.P638S 0.18 tolerated(0.39) benign(0.002) TCGA-EE-A2MJ-06 11 124120593 124120593 C T OR8G1 Silent p.T57T 0.17 TCGA-EE-A2MJ-06 11 124189446 124189446 G A OR8D2 Silent p.I216I 0.18 TCGA-EE-A2MJ-06 11 124252337 124252337 C T OR8B2 Silent p.R301R 0.17 TCGA-EE-A2MJ-06 11 124294000 124294000 G A OR8B4 Silent p.F256F 0.29 TCGA-EE-A2MJ-06 11 125617298 125617298 A C PATE1 Missense_Mutation p.N39T 0.18 tolerated(0.59) benign(0.107) TCGA-EE-A2MJ-06 11 125888225 125888225 G A CDON Missense_Mutation p.R214C 0.23 deleterious(0.01) possibly_damaging(0.556) TCGA-EE-A2MJ-06 11 130068470 130068470 G A ST14 Silent p.G546G 0.15 TCGA-EE-A2MJ-06 11 134244587 134244587 C T GLB1L2 Missense_Mutation p.P600L 0.20 deleterious(0.01) benign(0.278) TCGA-EE-A2MJ-06 11 16340164 16340164 G A SOX6 Silent p.S91S 0.09 TCGA-EE-A2MJ-06 11 16847974 16847974 G A PLEKHA7 Missense_Mutation p.R346C 0.21 tolerated(0.07) benign(0.276) TCGA-EE-A2MJ-06 11 16876498 16876498 C T PLEKHA7 Missense_Mutation p.D154N 0.28 deleterious(0.02) benign(0.173) TCGA-EE-A2MJ-06 11 20625943 20625943 C T SLC6A5 Missense_Mutation p.P218S 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 11 20652291 20652291 C T SLC6A5 Silent p.F518F 0.20 TCGA-EE-A2MJ-06 11 22261116 22261116 G A ANO5 Missense_Mutation p.G255D 0.25 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MJ-06 11 22399265 22399265 G A SLC17A6 Silent p.K576K 0.25 TCGA-EE-A2MJ-06 11 26574872 26574872 G A ANO3 Missense_Mutation p.D456N 0.15 tolerated(0.09) benign(0.434) TCGA-EE-A2MJ-06 11 26620468 26620468 G A ANO3 Missense_Mutation p.G532R 0.26 tolerated(0.28) probably_damaging(1) TCGA-EE-A2MJ-06 11 319853 319853 G A IFITM3 Silent p.F129F 0.14 TCGA-EE-A2MJ-06 11 32739681 32739681 G A CCDC73 Missense_Mutation p.H50Y 0.13 deleterious(0.01) benign(0.118) TCGA-EE-A2MJ-06 11 32953291 32953291 A G QSER1 Missense_Mutation p.M34V 0.17 deleterious(0.04) benign(0.076) TCGA-EE-A2MJ-06 11 33881075 33881075 G A LMO2 Missense_Mutation p.R171C 0.30 deleterious(0.04) possibly_damaging(0.776) TCGA-EE-A2MJ-06 11 36615100 36615100 G A RAG2 Missense_Mutation p.H207Y 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MJ-06 11 40135909 40135909 C T LRRC4C 3'UTR 0.25 TCGA-EE-A2MJ-06 11 43465731 43465731 C T TTC17 Silent p.G879G 0.14 TCGA-EE-A2MJ-06 11 43465732 43465732 C T TTC17 Missense_Mutation p.P880S 0.12 tolerated(0.17) probably_damaging(0.998) TCGA-EE-A2MJ-06 11 45265530 45265530 G A SYT13 3'UTR 0.23 TCGA-EE-A2MJ-06 11 45265573 45265573 G C SYT13 3'UTR 0.08 TCGA-EE-A2MJ-06 11 45932504 45932504 G A PEX16 Silent p.I299I 0.26 TCGA-EE-A2MJ-06 11 4594648 4594648 C T C11orf40 Missense_Mutation p.D66N 0.11 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-EE-A2MJ-06 11 4608387 4608387 C T OR52I2 Silent p.F115F 0.07 TCGA-EE-A2MJ-06 11 46419343 46419343 C T AMBRA1 Missense_Mutation p.S1095N 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2MJ-06 11 46723068 46723068 C T ZNF408 Missense_Mutation p.P58S 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 11 4674251 4674251 C T OR51E1 Silent p.F165F 0.09 TCGA-EE-A2MJ-06 11 46765780 46765780 G A CKAP5 Silent p.S1964S 0.11 TCGA-EE-A2MJ-06 11 47304127 47304127 C T MADD Silent p.I555I 0.18 TCGA-EE-A2MJ-06 11 47746311 47746311 G A FNBP4 Silent p.S676S 0.15 TCGA-EE-A2MJ-06 11 47746312 47746312 G A FNBP4 Missense_Mutation p.S676F 0.16 deleterious(0) possibly_damaging(0.553) TCGA-EE-A2MJ-06 11 48238598 48238598 C T OR4B1 Silent p.F79F 0.08 TCGA-EE-A2MJ-06 11 4825011 4825011 C T OR52R1 Silent p.G200G 0.10 TCGA-EE-A2MJ-06 11 48267270 48267270 C T OR4X2 Silent p.V205V 0.15 TCGA-EE-A2MJ-06 11 48347284 48347284 C T OR4C3 Silent p.T264T 0.09 TCGA-EE-A2MJ-06 11 4870000 4870000 C T OR51S1 Missense_Mutation p.G147S 0.18 tolerated(1) benign(0.015) TCGA-EE-A2MJ-06 11 4936029 4936029 G A OR51G2 Missense_Mutation p.P289S 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 11 5010967 5010967 G A MMP26 Silent p.R63R 0.15 TCGA-EE-A2MJ-06 11 5255235 5255235 G A HBD Missense_Mutation p.P101S 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MJ-06 11 5322391 5322391 C T OR51B4 Silent p.G262G 0.10 TCGA-EE-A2MJ-06 11 5345273 5345273 C T OR51B2 Silent p.V85V 0.25 TCGA-EE-A2MJ-06 11 5443584 5443584 C T OR51Q1 Missense_Mutation p.R52C 0.20 tolerated(0.05) benign(0.006) TCGA-EE-A2MJ-06 11 55135936 55135936 C T OR4A15 Nonsense_Mutation p.Q193* 0.09 TCGA-EE-A2MJ-06 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-EE-A2MJ-06 11 55371656 55371656 G A OR4C11 Missense_Mutation p.S65F 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 55406375 55406375 C T OR4P4 Missense_Mutation p.P181L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 55418704 55418704 G A OR4S2 Missense_Mutation p.E109K 0.09 deleterious(0.02) benign(0.04) TCGA-EE-A2MJ-06 11 55432969 55432969 G A OR4C6 Silent p.G109G 0.33 TCGA-EE-A2MJ-06 11 55587575 55587575 C T OR5D18 Missense_Mutation p.S157F 0.24 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MJ-06 11 55999927 55999927 G A OR5T2 Silent p.I245I 0.08 TCGA-EE-A2MJ-06 11 56128604 56128604 G A OR8J1 Silent p.R294R 0.12 TCGA-EE-A2MJ-06 11 57156616 57156616 G A PRG2 Missense_Mutation p.S78L 0.10 deleterious(0.04) benign(0.059) TCGA-EE-A2MJ-06 11 57369590 57369590 G A SERPING1 Silent p.K211K 0.22 TCGA-EE-A2MJ-06 11 57886847 57886847 C T OR9I1 Missense_Mutation p.E24K 0.12 tolerated(0.19) benign(0.001) TCGA-EE-A2MJ-06 11 57886848 57886848 C T OR9I1 Silent p.L23L 0.12 TCGA-EE-A2MJ-06 11 57958437 57958437 C T OR9Q2 Nonsense_Mutation p.R159* 0.21 TCGA-EE-A2MJ-06 11 58295563 58295563 G A LPXN Missense_Mutation p.L287F 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 11 5862319 5862319 G A OR52E6 Missense_Mutation p.P270L 0.08 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MJ-06 11 59189624 59189624 G A OR5A2 Missense_Mutation p.S268F 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MJ-06 11 60198378 60198378 C T MS4A5 Missense_Mutation p.P88L 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A2MJ-06 11 60971014 60971014 C T PGA3 5'UTR 0.16 TCGA-EE-A2MJ-06 11 61487708 61487708 C T DAGLA Silent p.L27L 0.11 TCGA-EE-A2MJ-06 11 6190761 6190761 A T OR52B2 Missense_Mutation p.F266I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 11 61959585 61959585 G A SCGB1D1 Missense_Mutation p.G38E 0.23 tolerated(0.66) possibly_damaging(0.507) TCGA-EE-A2MJ-06 11 62295588 62295588 T C AHNAK Missense_Mutation p.K2101E 0.11 probably_damaging(0.998) TCGA-EE-A2MJ-06 11 62376026 62376026 G A EML3 Silent p.A366A 0.14 TCGA-EE-A2MJ-06 11 63137867 63137867 G A SLC22A9 Missense_Mutation p.M113I 0.18 deleterious(0.04) benign(0.002) TCGA-EE-A2MJ-06 11 63235895 63235895 G A HRASLS5 Nonsense_Mutation p.R140* 0.11 TCGA-EE-A2MJ-06 11 64366372 64366372 G A SLC22A12 Silent p.R349R 0.18 TCGA-EE-A2MJ-06 11 64526175 64526175 C T PYGM Missense_Mutation p.R82K 0.21 tolerated(0.06) benign(0.018) TCGA-EE-A2MJ-06 11 64606563 64606563 T C CDC42BPG Missense_Mutation p.E273G 0.19 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2MJ-06 11 64825817 64825817 C T NAALADL1 Silent p.E59E 0.14 TCGA-EE-A2MJ-06 11 64853986 64853986 T C ZFPL1 Missense_Mutation p.F105S 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 11 65124129 65124129 C T TIGD3 Missense_Mutation p.L284F 0.22 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A2MJ-06 11 65653047 65653047 G A FIBP Silent p.A200A 0.18 TCGA-EE-A2MJ-06 11 66192534 66192534 G A NPAS4 Missense_Mutation p.E725K 0.22 tolerated_low_confidence(0.39) benign(0.108) TCGA-EE-A2MJ-06 11 67191319 67191319 G A CARNS1 Silent p.R700R 0.15 TCGA-EE-A2MJ-06 11 68115394 68115394 C T LRP5 Silent p.I57I 0.24 TCGA-EE-A2MJ-06 11 68201134 68201134 G A LRP5 Silent p.G1276G 0.22 TCGA-EE-A2MJ-06 11 6867807 6867807 G A OR10A5 Silent p.V298V 0.24 TCGA-EE-A2MJ-06 11 7059796 7059796 G A NLRP14 Splice_Site 0.11 TCGA-EE-A2MJ-06 11 7063788 7063788 G A NLRP14 Silent p.Q177Q 0.15 TCGA-EE-A2MJ-06 11 72404460 72404460 G A ARAP1 Silent p.S1288S 0.09 TCGA-EE-A2MJ-06 11 72423547 72423547 C T ARAP1 Missense_Mutation p.E272K 0.09 tolerated(0.17) benign(0.242) TCGA-EE-A2MJ-06 11 73073768 73073768 C T ARHGEF17 Missense_Mutation p.S1662F 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 11 73101834 73101834 C G RELT Missense_Mutation p.P52R 0.11 deleterious(0.05) benign(0.009) TCGA-EE-A2MJ-06 11 73101835 73101835 C T RELT Silent p.P52P 0.11 TCGA-EE-A2MJ-06 11 74009362 74009362 C T P4HA3 Silent p.L204L 0.22 TCGA-EE-A2MJ-06 11 75319271 75319271 G A MAP6 Silent p.T334T 0.12 TCGA-EE-A2MJ-06 11 76370947 76370947 G A LRRC32 Missense_Mutation p.R564W 0.16 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MJ-06 11 76868005 76868005 G A MYO7A Silent p.A230A 0.14 TCGA-EE-A2MJ-06 11 76924975 76924975 C T MYO7A Missense_Mutation p.T2170I 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 11 7818247 7818247 G A OR5P2 Silent p.F81F 0.19 TCGA-EE-A2MJ-06 11 7981498 7981498 G A NLRP10 Missense_Mutation p.S554F 0.24 deleterious(0.01) benign(0.118) TCGA-EE-A2MJ-06 11 7982626 7982626 C T NLRP10 Missense_Mutation p.G178E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 8496347 8496347 G A STK33 Missense_Mutation p.P36S 0.19 tolerated_low_confidence(0.21) benign(0.003) TCGA-EE-A2MJ-06 11 86098632 86098632 C T CCDC81 Silent p.I72I 0.17 TCGA-EE-A2MJ-06 11 89891364 89891364 C T NAALAD2 Missense_Mutation p.P283L 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 11 9052328 9052328 G A SCUBE2 Missense_Mutation p.S716F 0.23 deleterious(0) possibly_damaging(0.676) TCGA-EE-A2MJ-06 11 94599213 94599213 C A AMOTL1 Missense_Mutation p.P790T 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 11 94599214 94599214 C T AMOTL1 Missense_Mutation p.P790L 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MJ-06 11 9522699 9522699 C T ZNF143 Silent p.I343I 0.22 TCGA-EE-A2MJ-06 11 95512104 95512104 G A FAM76B Missense_Mutation p.S237L 0.29 tolerated(0.28) benign(0.017) TCGA-EE-A2MJ-06 12 101368620 101368620 C T ANO4 Intron 0.19 TCGA-EE-A2MJ-06 12 10339110 10339110 G A TMEM52B Missense_Mutation p.E57K 0.10 deleterious(0) benign(0.393) TCGA-EE-A2MJ-06 12 104042530 104042530 G A STAB2 Missense_Mutation p.R368Q 0.15 tolerated(0.1) benign(0.022) TCGA-EE-A2MJ-06 12 104049233 104049233 G A STAB2 Splice_Site p.X537_splice 0.10 TCGA-EE-A2MJ-06 12 106460825 106460825 C T NUAK1 Missense_Mutation p.D581N 0.16 deleterious(0.02) possibly_damaging(0.783) TCGA-EE-A2MJ-06 12 106461652 106461652 C T NUAK1 Nonsense_Mutation p.W305* 0.23 TCGA-EE-A2MJ-06 12 106824228 106824228 C T POLR3B Missense_Mutation p.P481S 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2MJ-06 12 106824229 106824229 C T POLR3B Missense_Mutation p.P481L 0.14 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2MJ-06 12 108011173 108011173 G A BTBD11 Missense_Mutation p.D731N 0.16 tolerated(0.15) probably_damaging(0.99) TCGA-EE-A2MJ-06 12 108589902 108589902 G A WSCD2 Missense_Mutation p.G98E 0.17 tolerated(1) benign(0.001) TCGA-EE-A2MJ-06 12 109292540 109292540 G A DAO Missense_Mutation p.E261K 0.15 tolerated(0.29) benign(0.007) TCGA-EE-A2MJ-06 12 109625967 109625967 C T ACACB Missense_Mutation p.S715L 0.11 deleterious(0.01) benign(0.311) TCGA-EE-A2MJ-06 12 110032977 110032977 C T MVK Missense_Mutation p.L344F 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 12 111085020 111085020 C T TCTN1 Missense_Mutation p.S505F 0.12 deleterious(0) possibly_damaging(0.557) TCGA-EE-A2MJ-06 12 111099116 111099116 C T HVCN1 Silent p.E53E 0.12 TCGA-EE-A2MJ-06 12 111336895 111336895 G A CCDC63 Silent p.G436G 0.15 TCGA-EE-A2MJ-06 12 111786100 111786100 C T CUX2 Missense_Mutation p.R1478W 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 12 112150336 112150336 A G ACAD10 Missense_Mutation p.E273G 0.26 deleterious(0.05) possibly_damaging(0.852) TCGA-EE-A2MJ-06 12 112486154 112486154 G A NAA25 Missense_Mutation p.H608Y 0.12 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MJ-06 12 112686220 112686220 G A HECTD4 Silent p.F1203F 0.26 TCGA-EE-A2MJ-06 12 113307833 113307833 G A RPH3A Missense_Mutation p.R262Q 0.14 tolerated(0.26) benign(0.003) TCGA-EE-A2MJ-06 12 113314656 113314656 G A RPH3A Missense_Mutation p.D386N 0.14 deleterious(0) probably_damaging(0.963) TCGA-EE-A2MJ-06 12 11420548 11420548 C T PRB3 Intron 0.11 TCGA-EE-A2MJ-06 12 11420937 11420937 G A PRB3 Silent p.P82P 0.16 TCGA-EE-A2MJ-06 12 11421019 11421019 C T PRB3 Missense_Mutation p.G55E 0.12 tolerated(0.13) unknown(0) TCGA-EE-A2MJ-06 12 11506846 11506846 C T PRB1 Missense_Mutation p.G64E 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MJ-06 12 116445228 116445228 C T MED13L Silent p.L742L 0.08 TCGA-EE-A2MJ-06 12 117660597 117660597 C T NOS1 Missense_Mutation p.E1334K 0.11 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2MJ-06 12 117768363 117768363 G A NOS1 Missense_Mutation p.S171L 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A2MJ-06 12 120241180 120241180 G A CIT Silent p.F375F 0.10 TCGA-EE-A2MJ-06 12 121098586 121098586 C T CABP1 Silent p.L294L 0.09 TCGA-EE-A2MJ-06 12 121154822 121154822 T G UNC119B Missense_Mutation p.F207C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 121426657 121426657 G A HNF1A Silent p.A116A 0.11 TCGA-EE-A2MJ-06 12 121442889 121442889 G A C12orf43 Silent p.R123R 0.08 TCGA-EE-A2MJ-06 12 121465506 121465506 C T OASL Missense_Mutation p.E258K 0.13 tolerated(0.13) benign(0.013) TCGA-EE-A2MJ-06 12 121878616 121878616 C T KDM2B Intron 0.18 TCGA-EE-A2MJ-06 12 123481277 123481277 G A PITPNM2 Silent p.F551F 0.09 TCGA-EE-A2MJ-06 12 124081261 124081261 C T TMED2 Silent p.V197V 0.15 TCGA-EE-A2MJ-06 12 124081262 124081262 C T TMED2 Missense_Mutation p.R198W 0.15 deleterious(0.03) benign(0.24) TCGA-EE-A2MJ-06 12 124848313 124848313 G A NCOR2 Missense_Mutation p.P947L 0.09 benign(0.406) TCGA-EE-A2MJ-06 12 124848314 124848314 G A NCOR2 Missense_Mutation p.P947S 0.09 benign(0.099) TCGA-EE-A2MJ-06 12 125509682 125509682 C T BRI3BP Silent p.F154F 0.21 TCGA-EE-A2MJ-06 12 126138574 126138574 C T TMEM132B Missense_Mutation p.S852F 0.19 deleterious(0.01) benign(0.278) TCGA-EE-A2MJ-06 12 126138647 126138647 G A TMEM132B Silent p.G876G 0.17 TCGA-EE-A2MJ-06 12 129558439 129558439 C T TMEM132D Missense_Mutation p.R1094K 0.09 tolerated(0.44) benign(0.009) TCGA-EE-A2MJ-06 12 129822269 129822269 G A TMEM132D Silent p.V403V 0.11 TCGA-EE-A2MJ-06 12 130926844 130926844 G A RIMBP2 Silent p.V334V 0.22 TCGA-EE-A2MJ-06 12 131451070 131451070 G A GPR133 Missense_Mutation p.E56K 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 12 133233813 133233813 G A POLE Missense_Mutation p.P1164L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 133294054 133294054 C T PGAM5 Missense_Mutation p.R134C 0.28 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 12 133306418 133306418 G A ANKLE2 Missense_Mutation p.P777L 0.09 tolerated(0.08) benign(0.004) TCGA-EE-A2MJ-06 12 133732822 133732822 C T ZNF10 Silent p.F330F 0.27 TCGA-EE-A2MJ-06 12 13828691 13828691 C T GRIN2B Silent p.R371R 0.19 TCGA-EE-A2MJ-06 12 14018773 14018773 G A GRIN2B Silent p.L124L 0.10 TCGA-EE-A2MJ-06 12 14947951 14947951 G A WBP11 Missense_Mutation p.P159S 0.11 deleterious(0.02) unknown(0) TCGA-EE-A2MJ-06 12 15262375 15262375 C T RERG Missense_Mutation p.G90E 0.22 tolerated(0.35) benign(0.019) TCGA-EE-A2MJ-06 12 15742453 15742453 C T PTPRO Missense_Mutation p.H1159Y 0.15 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MJ-06 12 18443928 18443928 C T PIK3C2G Missense_Mutation p.L301F 0.21 deleterious(0) benign(0.279) TCGA-EE-A2MJ-06 12 19512471 19512471 C T PLEKHA5 Silent p.F1158F 0.39 TCGA-EE-A2MJ-06 12 1969363 1969363 G A CACNA2D4 Missense_Mutation p.L630F 0.14 tolerated(0.05) benign(0.313) TCGA-EE-A2MJ-06 12 20803529 20803529 G A PDE3A Missense_Mutation p.E974K 0.11 deleterious(0) benign(0.42) TCGA-EE-A2MJ-06 12 21242929 21242929 C T SLCO1B7 Silent p.S604S 0.17 TCGA-EE-A2MJ-06 12 21370151 21370151 G A SLCO1B1 Silent p.R532R 0.15 TCGA-EE-A2MJ-06 12 21457425 21457425 G A SLCO1A2 Silent p.I175I 0.23 TCGA-EE-A2MJ-06 12 21679878 21679878 G A C12orf39 Missense_Mutation p.G22E 0.11 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MJ-06 12 21727182 21727182 G A GYS2 Nonsense_Mutation p.R192* 0.13 TCGA-EE-A2MJ-06 12 21919242 21919242 G A KCNJ8 Silent p.V230V 0.17 TCGA-EE-A2MJ-06 12 21970121 21970121 C T ABCC9 Missense_Mutation p.D1298N 0.09 tolerated(0.35) benign(0.038) TCGA-EE-A2MJ-06 12 21970122 21970122 C T ABCC9 Missense_Mutation p.M1297I 0.09 tolerated(0.27) benign(0.037) TCGA-EE-A2MJ-06 12 22005418 22005418 C T ABCC9 Missense_Mutation p.D843N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 22048214 22048214 G A ABCC9 Missense_Mutation p.L552F 0.09 deleterious(0.04) benign(0.059) TCGA-EE-A2MJ-06 12 24736623 24736623 C T LINC00477 RNA 0.12 TCGA-EE-A2MJ-06 12 25241092 25241092 G A LRMP Splice_Site p.X125_splice 0.14 TCGA-EE-A2MJ-06 12 2714934 2714934 C T CACNA1C Silent p.I1066I 0.11 TCGA-EE-A2MJ-06 12 27553489 27553489 C T ARNTL2 Silent p.I314I 0.10 TCGA-EE-A2MJ-06 12 27841341 27841341 C T PPFIBP1 Silent p.V833V 0.16 TCGA-EE-A2MJ-06 12 29630406 29630406 C T OVCH1 Missense_Mutation p.V372I 0.13 tolerated(0.44) benign(0.007) TCGA-EE-A2MJ-06 12 3120219 3120219 C T TEAD4 Silent p.T92T 0.10 TCGA-EE-A2MJ-06 12 39763563 39763563 G A KIF21A Missense_Mutation p.P140S 0.09 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MJ-06 12 40044066 40044066 C T C12orf40 Missense_Mutation p.S199F 0.16 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A2MJ-06 12 432786 432786 G A KDM5A Silent p.P710P 0.18 TCGA-EE-A2MJ-06 12 46601349 46601349 G A SLC38A1 Silent p.F148F 0.15 TCGA-EE-A2MJ-06 12 47181749 47181749 C T SLC38A4 Silent p.G92G 0.19 TCGA-EE-A2MJ-06 12 47186763 47186763 C T SLC38A4 Missense_Mutation p.G31E 0.20 tolerated(1) benign(0.001) TCGA-EE-A2MJ-06 12 4829879 4829879 C T GALNT8 Silent p.F12F 0.14 TCGA-EE-A2MJ-06 12 48359877 48359877 C T TMEM106C Silent p.T139T 0.16 TCGA-EE-A2MJ-06 12 48391405 48391405 G A COL2A1 Missense_Mutation p.P172L 0.16 unknown(0) TCGA-EE-A2MJ-06 12 49177250 49177250 G A ADCY6 5'UTR 0.13 TCGA-EE-A2MJ-06 12 49177252 49177252 G C ADCY6 5'UTR 0.12 TCGA-EE-A2MJ-06 12 493221 493221 G A KDM5A Silent p.I114I 0.10 TCGA-EE-A2MJ-06 12 49412649 49412649 G C PRKAG1 5'Flank 0.44 TCGA-EE-A2MJ-06 12 49444864 49444864 G C KMT2D Missense_Mutation p.P868A 0.12 unknown(0) TCGA-EE-A2MJ-06 12 49445952 49445952 G A KMT2D Missense_Mutation p.P505L 0.24 unknown(0) TCGA-EE-A2MJ-06 12 51748276 51748276 C T GALNT6 Missense_Mutation p.D586N 0.11 tolerated(0.12) benign(0.052) TCGA-EE-A2MJ-06 12 52841600 52841600 G A KRT6B Silent p.I462I 0.23 TCGA-EE-A2MJ-06 12 52887025 52887025 G A KRT6A 5'UTR 0.19 TCGA-EE-A2MJ-06 12 52940248 52940248 C T KRT71 Missense_Mutation p.G383R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 52943997 52943997 G A KRT71 Silent p.L158L 0.17 TCGA-EE-A2MJ-06 12 53045717 53045717 C T KRT2 Silent p.K70K 0.13 TCGA-EE-A2MJ-06 12 53170973 53170973 G A KRT76 Missense_Mutation p.R35C 0.10 tolerated(0.07) unknown(0) TCGA-EE-A2MJ-06 12 53228037 53228037 G A KRT79 Missense_Mutation p.S3F 0.19 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-EE-A2MJ-06 12 54069842 54069842 C T ATP5G2 Silent p.G45G 0.15 TCGA-EE-A2MJ-06 12 54069843 54069843 C T ATP5G2 Missense_Mutation p.G45E 0.15 tolerated_low_confidence(0.15) benign(0.14) TCGA-EE-A2MJ-06 12 54405341 54405341 C T HOXC8 3'UTR 0.22 TCGA-EE-A2MJ-06 12 54743418 54743418 C T COPZ1 Silent p.P154P 0.12 TCGA-EE-A2MJ-06 12 54797424 54797424 C T ITGA5 Missense_Mutation p.M587I 0.09 tolerated(0.17) probably_damaging(0.989) TCGA-EE-A2MJ-06 12 54798523 54798523 G A ITGA5 Nonsense_Mutation p.R461* 0.21 TCGA-EE-A2MJ-06 12 54917219 54917219 G A NCKAP1L Silent p.K640K 0.15 TCGA-EE-A2MJ-06 12 54925124 54925124 C T NCKAP1L Nonsense_Mutation p.Q863* 0.08 TCGA-EE-A2MJ-06 12 55038474 55038474 C T DCD 3'UTR 0.17 TCGA-EE-A2MJ-06 12 55523632 55523632 G A OR9K2 Missense_Mutation p.G27E 0.20 tolerated(0.51) benign(0.003) TCGA-EE-A2MJ-06 12 55863266 55863266 G A OR6C70 Silent p.I219I 0.21 TCGA-EE-A2MJ-06 12 55887086 55887086 C T OR6C68 Missense_Mutation p.R309C 0.19 deleterious_low_confidence(0.02) benign(0.016) TCGA-EE-A2MJ-06 12 56359829 56359829 G A PMEL 5'Flank 0.20 TCGA-EE-A2MJ-06 12 56385228 56385228 C T RAB5B Silent p.L175L 0.12 TCGA-EE-A2MJ-06 12 57111418 57111418 C T NACA Intron 0.11 TCGA-EE-A2MJ-06 12 5756932 5756932 G A ANO2 Silent p.F527F 0.15 TCGA-EE-A2MJ-06 12 58340857 58340857 C T XRCC6BP1 Nonsense_Mutation p.Q105* 0.15 TCGA-EE-A2MJ-06 12 5915235 5915235 C T ANO2 Missense_Mutation p.D321N 0.11 tolerated(0.12) possibly_damaging(0.894) TCGA-EE-A2MJ-06 12 62938768 62938768 C T MON2 Missense_Mutation p.P853S 0.13 deleterious(0.04) benign(0.439) TCGA-EE-A2MJ-06 12 64202716 64202716 C T TMEM5 Silent p.L392L 0.09 TCGA-EE-A2MJ-06 12 6438428 6438428 G A TNFRSF1A 3'UTR 0.11 TCGA-EE-A2MJ-06 12 6574033 6574033 C T VAMP1 Intron 0.12 TCGA-EE-A2MJ-06 12 6675733 6675733 G A NOP2 Missense_Mutation p.S67F 0.12 tolerated(0.06) benign(0.009) TCGA-EE-A2MJ-06 12 68595632 68595632 C G IL26 Missense_Mutation p.S170T 0.09 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MJ-06 12 6884734 6884734 G A LAG3 Intron 0.17 TCGA-EE-A2MJ-06 12 6953089 6953089 G A GNB3 Missense_Mutation p.G216R 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A2MJ-06 12 70953333 70953333 G A PTPRB Missense_Mutation p.P1502S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 70954521 70954521 C T PTPRB Silent p.R1454R 0.12 TCGA-EE-A2MJ-06 12 70964942 70964942 T A PTPRB Silent p.V1078V 0.09 TCGA-EE-A2MJ-06 12 70975044 70975044 C T PTPRB Missense_Mutation p.G784R 0.12 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MJ-06 12 71519003 71519004 - G TSPAN8 3'UTR 0.14 TCGA-EE-A2MJ-06 12 7249576 7249576 G A C1RL Missense_Mutation p.S292F 0.20 tolerated(0.82) benign(0.016) TCGA-EE-A2MJ-06 12 73046898 73046898 G A TRHDE Nonsense_Mutation p.W937* 0.14 TCGA-EE-A2MJ-06 12 7527908 7527908 G A CD163L1 Silent p.I990I 0.20 TCGA-EE-A2MJ-06 12 7640503 7640503 C T CD163 Missense_Mutation p.G534E 0.12 tolerated(0.19) probably_damaging(0.914) TCGA-EE-A2MJ-06 12 78511934 78511934 C T NAV3 Missense_Mutation p.S966F 0.10 deleterious(0) benign(0.336) TCGA-EE-A2MJ-06 12 7867976 7867976 G A DPPA3 Missense_Mutation p.E94K 0.17 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A2MJ-06 12 8374826 8374826 C T FAM90A1 Silent p.E329E 0.25 TCGA-EE-A2MJ-06 12 86198920 86198920 C T RASSF9 Missense_Mutation p.E290K 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 8687247 8687247 C T CLEC4E Missense_Mutation p.G216E 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MJ-06 12 8693356 8693356 C T CLEC4E Splice_Site p.X13_splice 0.15 TCGA-EE-A2MJ-06 12 88588803 88588803 C T TMTC3 Silent p.L708L 0.21 TCGA-EE-A2MJ-06 12 89985051 89985051 G A ATP2B1 Missense_Mutation p.R1125C 0.17 deleterious(0) possibly_damaging(0.721) TCGA-EE-A2MJ-06 12 91348334 91348334 G A CCER1 Silent p.P62P 0.25 TCGA-EE-A2MJ-06 12 91449442 91449442 T A KERA Missense_Mutation p.N206I 0.10 deleterious(0.03) benign(0.028) TCGA-EE-A2MJ-06 12 91449715 91449715 C T KERA Missense_Mutation p.G115E 0.11 tolerated(0.12) possibly_damaging(0.793) TCGA-EE-A2MJ-06 12 91497902 91497902 G A LUM 3'UTR 0.13 TCGA-EE-A2MJ-06 12 91497959 91497959 C T LUM Missense_Mutation p.E334K 0.16 tolerated(0.49) benign(0.07) TCGA-EE-A2MJ-06 12 9264775 9264775 A T A2M Missense_Mutation p.F155I 0.21 deleterious(0) possibly_damaging(0.556) TCGA-EE-A2MJ-06 12 94673247 94673247 G A PLXNC1 Splice_Site p.X1200_splice 0.14 TCGA-EE-A2MJ-06 12 95604123 95604123 G A FGD6 Missense_Mutation p.P313S 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MJ-06 12 95927347 95927347 G A USP44 Missense_Mutation p.S229F 0.13 tolerated(0.06) benign(0.021) TCGA-EE-A2MJ-06 12 97133775 97133775 C T C12orf55 Missense_Mutation p.S2336L 0.10 deleterious(0) benign(0.002) TCGA-EE-A2MJ-06 12 989990 989990 C T WNK1 Missense_Mutation p.P979L 0.07 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MJ-06 13 101742248 101742248 G A NALCN Silent p.S1113S 0.10 TCGA-EE-A2MJ-06 13 102366796 102366796 C T ITGBL1 Missense_Mutation p.H430Y 0.13 tolerated(0.8) probably_damaging(0.943) TCGA-EE-A2MJ-06 13 102527575 102527575 C T FGF14 Missense_Mutation p.G94R 0.16 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 13 110829287 110829287 C T COL4A1 Missense_Mutation p.M938I 0.13 benign(0.003) TCGA-EE-A2MJ-06 13 110864929 110864929 C T COL4A1 Missense_Mutation p.G106R 0.10 unknown(0) TCGA-EE-A2MJ-06 13 111138038 111138038 G A COL4A2 Missense_Mutation p.G1021E 0.18 possibly_damaging(0.887) TCGA-EE-A2MJ-06 13 113478715 113478715 C T ATP11A Missense_Mutation p.S283F 0.12 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2MJ-06 13 113826022 113826022 G A PROZ Nonsense_Mutation p.W291* 0.11 TCGA-EE-A2MJ-06 13 21237654 21237654 C T IFT88 Missense_Mutation p.R705C 0.12 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MJ-06 13 21306032 21306032 T G N6AMT2 Missense_Mutation p.K152N 0.08 deleterious(0.02) benign(0.392) TCGA-EE-A2MJ-06 13 21715073 21715073 C T SAP18 Missense_Mutation p.H60Y 0.12 tolerated(0.08) benign(0.074) TCGA-EE-A2MJ-06 13 23869566 23869566 C T SGCG Missense_Mutation p.A173V 0.09 tolerated(0.18) probably_damaging(1) TCGA-EE-A2MJ-06 13 23869617 23869617 A C SGCG Missense_Mutation p.Q190P 0.17 tolerated(0.05) benign(0.005) TCGA-EE-A2MJ-06 13 23912636 23912636 A C SACS Missense_Mutation p.F1793L 0.12 benign(0.39) TCGA-EE-A2MJ-06 13 25274926 25274926 A T ATP12A Missense_Mutation p.T589S 0.15 tolerated(0.1) benign(0.012) TCGA-EE-A2MJ-06 13 25281459 25281459 C T ATP12A Missense_Mutation p.S800F 0.08 deleterious(0.01) benign(0.072) TCGA-EE-A2MJ-06 13 25743772 25743772 C T AMER2 Silent p.T662T 0.10 TCGA-EE-A2MJ-06 13 29001962 29001962 C T FLT1 Silent p.G401G 0.20 TCGA-EE-A2MJ-06 13 29600796 29600796 C T MTUS2 Missense_Mutation p.A664V 0.14 tolerated(0.06) benign(0.096) TCGA-EE-A2MJ-06 13 30110110 30110110 G A SLC7A1 Silent p.I72I 0.16 TCGA-EE-A2MJ-06 13 33629412 33629412 C T KL Missense_Mutation p.P520L 0.13 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MJ-06 13 33635004 33635004 C T KL Silent p.S596S 0.14 TCGA-EE-A2MJ-06 13 36424870 36424870 C T DCLK1 Intron 0.12 TCGA-EE-A2MJ-06 13 36748878 36748878 G A SOHLH2 Missense_Mutation p.S334F 0.11 deleterious(0) benign(0.176) TCGA-EE-A2MJ-06 13 38320170 38320170 G A TRPC4 Silent p.I267I 0.12 TCGA-EE-A2MJ-06 13 41767060 41767060 G A KBTBD7 Missense_Mutation p.P445L 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A2MJ-06 13 42465620 42465620 C T VWA8 Missense_Mutation p.R196K 0.08 tolerated(0.1) probably_damaging(1) TCGA-EE-A2MJ-06 13 43462408 43462408 C T EPSTI1 Missense_Mutation p.G404E 0.15 tolerated_low_confidence(0.25) benign(0.025) TCGA-EE-A2MJ-06 13 46717441 46717441 C T LCP1 Missense_Mutation p.G451E 0.12 tolerated(0.09) probably_damaging(0.955) TCGA-EE-A2MJ-06 13 47315886 47315886 C G LRCH1 Missense_Mutation p.A732G 0.06 tolerated(0.17) benign(0.281) TCGA-EE-A2MJ-06 13 47315891 47315891 C T LRCH1 Missense_Mutation p.R734C 0.08 tolerated(0.1) benign(0.023) TCGA-EE-A2MJ-06 13 52313270 52313270 C T WDFY2 Silent p.I228I 0.12 TCGA-EE-A2MJ-06 13 52524464 52524464 G A ATP7B Missense_Mutation p.P840L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 13 52676350 52676350 G A NEK5 Missense_Mutation p.R230C 0.11 tolerated(0.14) benign(0.009) TCGA-EE-A2MJ-06 13 52960230 52960230 G C THSD1 Missense_Mutation p.F371L 0.10 tolerated(0.75) benign(0.003) TCGA-EE-A2MJ-06 13 72147041 72147041 G A DACH1 Silent p.T412T 0.13 TCGA-EE-A2MJ-06 13 77673139 77673139 C T MYCBP2 Missense_Mutation p.G2679E 0.10 benign(0.01) TCGA-EE-A2MJ-06 13 78218422 78218422 G A SCEL 3'UTR 0.26 TCGA-EE-A2MJ-06 13 84455190 84455190 C T SLITRK1 Silent p.Q151Q 0.19 TCGA-EE-A2MJ-06 13 86370664 86370664 G A SLITRK6 5'UTR 0.19 TCGA-EE-A2MJ-06 13 92345508 92345508 G A GPC5 Silent p.R131R 0.10 TCGA-EE-A2MJ-06 13 92797201 92797201 C T GPC5 Missense_Mutation p.S507L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 13 93518551 93518551 G A GPC5 Missense_Mutation p.M526I 0.08 tolerated(0.1) benign(0.007) TCGA-EE-A2MJ-06 13 99037088 99037088 C T FARP1 Missense_Mutation p.H201Y 0.20 deleterious(0) possibly_damaging(0.53) TCGA-EE-A2MJ-06 14 100182517 100182517 C T CYP46A1 Silent p.F296F 0.09 TCGA-EE-A2MJ-06 14 101200880 101200880 C T DLK1 Missense_Mutation p.R267C 0.13 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2MJ-06 14 101507748 101507748 G A MIR300 RNA 0.22 TCGA-EE-A2MJ-06 14 102916011 102916011 C T TECPR2 Nonsense_Mutation p.Q1041* 0.16 TCGA-EE-A2MJ-06 14 104490932 104490932 C A TDRD9 Missense_Mutation p.T878K 0.20 deleterious(0.03) benign(0.035) TCGA-EE-A2MJ-06 14 105418955 105418955 G A AHNAK2 Silent p.L945L 0.19 TCGA-EE-A2MJ-06 14 106091302 106091302 C T IGHG4 Missense_Mutation p.E198K 0.05 tolerated(0.16) benign(0.104) TCGA-EE-A2MJ-06 14 106091303 106091303 C T IGHG4 Silent p.K197K 0.05 TCGA-EE-A2MJ-06 14 106236253 106236253 G A IGHG3 Silent p.S184S 0.34 TCGA-EE-A2MJ-06 14 106405666 106405666 G A IGHV6-1 Missense_Mutation p.S103F 0.15 tolerated(0.16) possibly_damaging(0.739) TCGA-EE-A2MJ-06 14 106539233 106539233 C T IGHV1-8 Nonsense_Mutation p.W66* 0.17 TCGA-EE-A2MJ-06 14 106667716 106667716 C T IGHV3-20 Nonsense_Mutation p.W72* 0.14 TCGA-EE-A2MJ-06 14 106725454 106725454 G A IGHV3-23 Missense_Mutation p.P33L 0.08 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-EE-A2MJ-06 14 106829751 106829751 A C IGHV4-34 Missense_Mutation p.L71R 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 14 106845496 106845496 G A IGHV3-35 Missense_Mutation p.P60S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-EE-A2MJ-06 14 107078658 107078658 C T IGHV1-58 Silent p.Q22Q 0.26 TCGA-EE-A2MJ-06 14 107210977 107210977 C T IGHV3-73 Missense_Mutation p.M104I 0.10 deleterious_low_confidence(0.01) benign(0.238) TCGA-EE-A2MJ-06 14 19553804 19553804 G A POTEG Missense_Mutation p.E130K 0.10 deleterious(0.04) possibly_damaging(0.776) TCGA-EE-A2MJ-06 14 20249186 20249186 C T OR4M1 Silent p.T235T 0.12 TCGA-EE-A2MJ-06 14 20295961 20295961 G A OR4N2 Missense_Mutation p.M118I 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 14 20345023 20345023 G A OR4K2 Missense_Mutation p.M199I 0.09 tolerated(0.6) probably_damaging(0.998) TCGA-EE-A2MJ-06 14 20404557 20404557 C T OR4K1 Silent p.I244I 0.08 TCGA-EE-A2MJ-06 14 20666407 20666407 G A OR11G2 Missense_Mutation p.E305K 0.13 tolerated(0.12) benign(0.013) TCGA-EE-A2MJ-06 14 20691973 20691973 C T OR11H6 Silent p.F35F 0.23 TCGA-EE-A2MJ-06 14 21024712 21024712 C T RNASE9 Missense_Mutation p.E178K 0.17 tolerated(0.14) possibly_damaging(0.595) TCGA-EE-A2MJ-06 14 21623357 21623357 G A OR5AU1 Silent p.I276I 0.26 TCGA-EE-A2MJ-06 14 21945354 21945354 C T TOX4 5'UTR 0.25 TCGA-EE-A2MJ-06 14 22038555 22038555 G A OR10G3 Silent p.F107F 0.17 TCGA-EE-A2MJ-06 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.28 deleterious(0.04) benign(0.202) TCGA-EE-A2MJ-06 14 22205105 22205105 C T TRAV4 Missense_Mutation p.P57S 0.12 tolerated(0.08) possibly_damaging(0.501) TCGA-EE-A2MJ-06 14 22315312 22315312 G T TRAV8-2 Missense_Mutation p.A84S 0.21 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2MJ-06 14 22363196 22363196 C T TRAV8-4 Silent p.F109F 0.12 TCGA-EE-A2MJ-06 14 22740241 22740241 G A TRAV38-1 Missense_Mutation p.E49K 0.23 tolerated(0.9) benign(0.075) TCGA-EE-A2MJ-06 14 23416932 23416932 G A HAUS4 Silent p.L239L 0.09 TCGA-EE-A2MJ-06 14 23511855 23511855 G A PSMB11 Missense_Mutation p.G141R 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 23829435 23829435 C T EFS Missense_Mutation p.G118E 0.09 tolerated(0.45) possibly_damaging(0.611) TCGA-EE-A2MJ-06 14 23855235 23855235 C T MYH6 Missense_Mutation p.E1689K 0.24 deleterious(0.02) benign(0.077) TCGA-EE-A2MJ-06 14 23866823 23866823 C T MYH6 Splice_Site p.X631_splice 0.14 TCGA-EE-A2MJ-06 14 23874910 23874910 C T MYH6 Missense_Mutation p.A91T 0.11 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MJ-06 14 23899822 23899822 C T MYH7 Missense_Mutation p.G316R 0.15 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MJ-06 14 24108413 24108413 C T DHRS2 Silent p.L56L 0.08 TCGA-EE-A2MJ-06 14 24723876 24723876 G A TGM1 Silent p.S694S 0.19 TCGA-EE-A2MJ-06 14 24808479 24808479 G A RIPK3 Silent p.F71F 0.10 TCGA-EE-A2MJ-06 14 24897149 24897149 G A CBLN3 Missense_Mutation p.A155V 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 14 25075705 25075705 C T GZMH 3'UTR 0.11 TCGA-EE-A2MJ-06 14 26917315 26917315 G A NOVA1 Silent p.S458S 0.16 TCGA-EE-A2MJ-06 14 33293203 33293203 G A AKAP6 Missense_Mutation p.E2062K 0.11 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MJ-06 14 36784011 36784011 G A MBIP Silent p.S120S 0.09 TCGA-EE-A2MJ-06 14 38723952 38723952 G A CLEC14A Missense_Mutation p.H426Y 0.13 deleterious(0) possibly_damaging(0.635) TCGA-EE-A2MJ-06 14 39650383 39650383 C T PNN Silent p.S490S 0.11 TCGA-EE-A2MJ-06 14 47120418 47120418 C T RPL10L Silent p.T174T 0.15 TCGA-EE-A2MJ-06 14 51378726 51378726 G A PYGL Silent p.F599F 0.15 TCGA-EE-A2MJ-06 14 52478331 52478331 C T NID2 Missense_Mutation p.R1164Q 0.14 tolerated(0.08) probably_damaging(0.992) TCGA-EE-A2MJ-06 14 52985926 52985926 T A TXNDC16 Missense_Mutation p.I160F 0.10 deleterious(0.01) benign(0.439) TCGA-EE-A2MJ-06 14 53149100 53149100 G A ERO1L Silent p.F87F 0.20 TCGA-EE-A2MJ-06 14 53340905 53340905 T C FERMT2 Missense_Mutation p.K380E 0.15 deleterious(0) benign(0.22) TCGA-EE-A2MJ-06 14 58825899 58825899 G A ARID4A Missense_Mutation p.G635S 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 59113693 59113693 G A DACT1 Nonsense_Mutation p.W784* 0.09 TCGA-EE-A2MJ-06 14 60903741 60903741 C T C14orf39 Missense_Mutation p.G529E 0.14 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A2MJ-06 14 61180413 61180413 C T SIX4 Silent p.G686G 0.13 TCGA-EE-A2MJ-06 14 62016441 62016441 C T PRKCH Silent p.F648F 0.18 TCGA-EE-A2MJ-06 14 63453887 63453887 C T KCNH5 Missense_Mutation p.R151Q 0.12 tolerated(0.06) possibly_damaging(0.616) TCGA-EE-A2MJ-06 14 65208571 65208571 C T PLEKHG3 Missense_Mutation p.S723F 0.09 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MJ-06 14 65239436 65239436 C T SPTB Silent p.T1805T 0.16 TCGA-EE-A2MJ-06 14 69697274 69697274 C T EXD2 Missense_Mutation p.R226C 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 69701570 69701570 C T EXD2 Missense_Mutation p.P291S 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2MJ-06 14 71428979 71428979 C T PCNX Silent p.I133I 0.17 TCGA-EE-A2MJ-06 14 72190486 72190486 C T SIPA1L1 Missense_Mutation p.S1465F 0.08 tolerated(0.06) probably_damaging(0.982) TCGA-EE-A2MJ-06 14 72939610 72939610 G A RGS6 Silent p.R189R 0.26 TCGA-EE-A2MJ-06 14 73985814 73985814 C T HEATR4 Missense_Mutation p.E375K 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MJ-06 14 74036061 74036061 G A ACOT2 Silent p.K39K 0.13 TCGA-EE-A2MJ-06 14 74411155 74411155 C T FAM161B Missense_Mutation p.E333K 0.12 tolerated(0.06) benign(0.059) TCGA-EE-A2MJ-06 14 75016635 75016635 C T LTBP2 Missense_Mutation p.E574K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 75247204 75247204 C T YLPM1 Nonsense_Mutation p.Q403* 0.16 TCGA-EE-A2MJ-06 14 75283748 75283748 A T YLPM1 Missense_Mutation p.I1934F 0.27 probably_damaging(0.981) TCGA-EE-A2MJ-06 14 76965182 76965182 T A ESRRB Intron 0.13 TCGA-EE-A2MJ-06 14 76965190 76965190 C T ESRRB Intron 0.11 TCGA-EE-A2MJ-06 14 76967055 76967055 C T ESRRB Silent p.L506L 0.12 TCGA-EE-A2MJ-06 14 77580245 77580245 C T CIPC Missense_Mutation p.P262S 0.22 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 80669237 80669237 G A DIO2 Missense_Mutation p.P242L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 81744852 81744852 T A STON2 Missense_Mutation p.N268I 0.19 deleterious_low_confidence(0.02) benign(0.377) TCGA-EE-A2MJ-06 14 90754980 90754980 G A NRDE2 Silent p.F913F 0.10 TCGA-EE-A2MJ-06 14 92055929 92055929 G A CATSPERB Missense_Mutation p.P969S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 14 92083984 92083984 C T CATSPERB Missense_Mutation p.S786N 0.15 tolerated(0.38) possibly_damaging(0.832) TCGA-EE-A2MJ-06 14 93118037 93118037 C T RIN3 Missense_Mutation p.H215Y 0.12 tolerated(0.42) unknown(0) TCGA-EE-A2MJ-06 14 94756700 94756700 C T SERPINA10 Silent p.K77K 0.10 TCGA-EE-A2MJ-06 14 94914781 94914781 G A SERPINA11 Missense_Mutation p.P111S 0.14 tolerated(0.26) benign(0.104) TCGA-EE-A2MJ-06 14 95085577 95085577 G A SERPINA3 Missense_Mutation p.R230K 0.09 tolerated(0.7) benign(0.001) TCGA-EE-A2MJ-06 14 95590606 95590606 G A DICER1 Missense_Mutation p.P435S 0.22 tolerated(0.3) probably_damaging(0.998) TCGA-EE-A2MJ-06 14 95669759 95669759 G A CLMN Missense_Mutation p.P643S 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MJ-06 14 96134556 96134556 G A TCL6 Intron 0.17 TCGA-EE-A2MJ-06 14 99866594 99866594 C T SETD3 Missense_Mutation p.E394K 0.10 deleterious(0.01) possibly_damaging(0.837) TCGA-EE-A2MJ-06 15 101718347 101718347 C T CHSY1 Missense_Mutation p.G552E 0.15 tolerated(1) benign(0.006) TCGA-EE-A2MJ-06 15 101905176 101905176 G A PCSK6 Intron 0.22 TCGA-EE-A2MJ-06 15 101972284 101972284 C T PCSK6 Missense_Mutation p.E141K 0.16 tolerated(0.64) benign(0.003) TCGA-EE-A2MJ-06 15 102346165 102346165 G A OR4F6 Missense_Mutation p.M81I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-EE-A2MJ-06 15 20643903 20643903 G A HERC2P3 RNA 0.11 TCGA-EE-A2MJ-06 15 20649655 20649655 G A HERC2P3 RNA 0.10 TCGA-EE-A2MJ-06 15 23811410 23811410 C T MKRN3 Missense_Mutation p.P161S 0.15 tolerated(0.23) benign(0.284) TCGA-EE-A2MJ-06 15 23931706 23931706 C G NDN Missense_Mutation p.R220P 0.42 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A2MJ-06 15 24921298 24921298 G A NPAP1 Missense_Mutation p.R95K 0.13 tolerated(1) benign(0.068) TCGA-EE-A2MJ-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.17 tolerated(0.26) probably_damaging(0.991) TCGA-EE-A2MJ-06 15 25223643 25223643 A G SNRPN 3'UTR 0.17 TCGA-EE-A2MJ-06 15 25328811 25328811 C T SNORD116-17 RNA 0.13 TCGA-EE-A2MJ-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.14 TCGA-EE-A2MJ-06 15 25425674 25425674 G A SNORD115-6 RNA 0.08 TCGA-EE-A2MJ-06 15 25458849 25458849 C T SNORD115-24 RNA 0.14 TCGA-EE-A2MJ-06 15 25488769 25488769 G A SNORD115-40 RNA 0.18 TCGA-EE-A2MJ-06 15 26825523 26825523 G A GABRB3 Missense_Mutation p.P209S 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A2MJ-06 15 34640322 34640322 C T NUTM1 Missense_Mutation p.P57S 0.22 tolerated(0.06) possibly_damaging(0.777) TCGA-EE-A2MJ-06 15 34648432 34648432 G A NUTM1 Silent p.R713R 0.12 TCGA-EE-A2MJ-06 15 35703089 35703089 G A DPH6 Missense_Mutation p.P172S 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MJ-06 15 37110216 37110216 C T CSNK1A1P1 RNA 0.18 TCGA-EE-A2MJ-06 15 38757492 38757492 C T FAM98B Silent p.F80F 0.11 TCGA-EE-A2MJ-06 15 42282377 42282377 G A PLA2G4E Silent p.P509P 0.16 TCGA-EE-A2MJ-06 15 42298262 42298262 G A PLA2G4E Silent p.L151L 0.10 TCGA-EE-A2MJ-06 15 42375969 42375969 C T PLA2G4D Silent p.E160E 0.17 TCGA-EE-A2MJ-06 15 42743035 42743035 G A ZNF106 Missense_Mutation p.P456S 0.09 tolerated(0.38) benign(0.027) TCGA-EE-A2MJ-06 15 43019897 43019897 G A CDAN1 Silent p.A1006A 0.19 TCGA-EE-A2MJ-06 15 43820735 43820735 A C MAP1A Missense_Mutation p.E2355A 0.12 benign(0) TCGA-EE-A2MJ-06 15 43821450 43821450 G A MAP1A Silent p.E2593E 0.12 TCGA-EE-A2MJ-06 15 44028388 44028388 G A RNU6-354P 5'Flank 0.20 TCGA-EE-A2MJ-06 15 44105298 44105298 G A MFAP1 Silent p.S258S 0.15 TCGA-EE-A2MJ-06 15 44867233 44867233 C T SPG11 Missense_Mutation p.S1958N 0.18 deleterious(0.02) possibly_damaging(0.682) TCGA-EE-A2MJ-06 15 45059798 45059798 G A TRIM69 Missense_Mutation p.G444D 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 15 45702582 45702582 C G SPATA5L1 Missense_Mutation p.P430A 0.12 tolerated(0.31) benign(0.002) TCGA-EE-A2MJ-06 15 48500135 48500135 C T SLC12A1 Silent p.F73F 0.18 TCGA-EE-A2MJ-06 15 49867222 49867222 G A FAM227B Missense_Mutation p.L211F 0.15 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MJ-06 15 50366334 50366334 A C ATP8B4 Missense_Mutation p.F26C 0.09 deleterious(0.02) possibly_damaging(0.695) TCGA-EE-A2MJ-06 15 50489868 50489868 C T SLC27A2 Missense_Mutation p.S217F 0.16 deleterious(0.01) benign(0.035) TCGA-EE-A2MJ-06 15 51350300 51350300 C T TNFAIP8L3 Silent p.R219R 0.20 TCGA-EE-A2MJ-06 15 51503147 51503147 C T CYP19A1 Missense_Mutation p.R457Q 0.17 tolerated(0.29) benign(0.28) TCGA-EE-A2MJ-06 15 51830440 51830440 C A DMXL2 Nonsense_Mutation p.E439* 0.09 TCGA-EE-A2MJ-06 15 52017164 52017164 A C LYSMD2 Missense_Mutation p.F143C 0.08 tolerated(0.21) benign(0.379) TCGA-EE-A2MJ-06 15 52245340 52245340 C T LEO1 Silent p.T487T 0.15 TCGA-EE-A2MJ-06 15 52418213 52418213 C T GNB5 Missense_Mutation p.R314K 0.30 tolerated(0.11) possibly_damaging(0.62) TCGA-EE-A2MJ-06 15 52442020 52442020 G A GNB5 Intron 0.17 TCGA-EE-A2MJ-06 15 52487585 52487585 G A MYO5C Missense_Mutation p.R1689C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 15 52534250 52534250 G A MYO5C Nonsense_Mutation p.R851* 0.11 TCGA-EE-A2MJ-06 15 53889321 53889321 C T WDR72 Missense_Mutation p.E1035K 0.10 tolerated(0.19) benign(0.008) TCGA-EE-A2MJ-06 15 54307588 54307588 A T UNC13C Missense_Mutation p.M830L 0.27 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A2MJ-06 15 56386491 56386491 G A RFX7 Silent p.V1145V 0.08 TCGA-EE-A2MJ-06 15 57730340 57730340 G A CGNL1 Missense_Mutation p.G48E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 15 57730408 57730408 G A CGNL1 Missense_Mutation p.E71K 0.26 tolerated(0.05) possibly_damaging(0.678) TCGA-EE-A2MJ-06 15 57925876 57925876 C T GCOM1 Silent p.I290I 0.12 TCGA-EE-A2MJ-06 15 64791938 64791938 C T ZNF609 Missense_Mutation p.S107F 0.21 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MJ-06 15 64968435 64968435 C T ZNF609 Missense_Mutation p.P1128S 0.11 tolerated(0.13) benign(0.112) TCGA-EE-A2MJ-06 15 64968436 64968436 C T ZNF609 Missense_Mutation p.P1128L 0.10 deleterious(0.05) benign(0.441) TCGA-EE-A2MJ-06 15 65054603 65054603 G A RBPMS2 Intron 0.17 TCGA-EE-A2MJ-06 15 65494342 65494342 G A CILP Missense_Mutation p.P352S 0.20 tolerated(0.26) possibly_damaging(0.887) TCGA-EE-A2MJ-06 15 65495726 65495726 C T CILP Silent p.G334G 0.13 TCGA-EE-A2MJ-06 15 65891312 65891312 G A VWA9 Missense_Mutation p.S111F 0.18 deleterious(0.01) possibly_damaging(0.754) TCGA-EE-A2MJ-06 15 67713790 67713790 G A IQCH Missense_Mutation p.V794M 0.10 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MJ-06 15 70969480 70969480 C T UACA Splice_Site p.X334_splice 0.18 TCGA-EE-A2MJ-06 15 71203926 71203926 C T LRRC49 Missense_Mutation p.H191Y 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MJ-06 15 71341895 71341895 C T LRRC49 Missense_Mutation p.R674C 0.15 deleterious(0.02) possibly_damaging(0.828) TCGA-EE-A2MJ-06 15 71535002 71535002 G A THSD4 Missense_Mutation p.G160D 0.08 tolerated(0.95) benign(0.164) TCGA-EE-A2MJ-06 15 72189838 72189838 A G MYO9A Missense_Mutation p.I1669T 0.14 tolerated_low_confidence(0.11) benign(0.359) TCGA-EE-A2MJ-06 15 72954753 72954753 G A GOLGA6B Silent p.K336K 0.06 TCGA-EE-A2MJ-06 15 74709735 74709735 G A SEMA7A Missense_Mutation p.P201L 0.17 deleterious(0.01) benign(0.11) TCGA-EE-A2MJ-06 15 75047276 75047276 G A CYP1A2 Nonsense_Mutation p.W466* 0.11 TCGA-EE-A2MJ-06 15 75498642 75498642 G A C15orf39 Missense_Mutation p.D85N 0.24 tolerated(0.15) possibly_damaging(0.728) TCGA-EE-A2MJ-06 15 75498907 75498907 C T C15orf39 Missense_Mutation p.P173L 0.11 deleterious(0.02) possibly_damaging(0.851) TCGA-EE-A2MJ-06 15 81428989 81428989 G A C15orf26 Missense_Mutation p.E98K 0.10 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2MJ-06 15 81625006 81625006 G A TMC3 Silent p.F1019F 0.19 TCGA-EE-A2MJ-06 15 81644161 81644161 C T TMC3 Silent p.R319R 0.31 TCGA-EE-A2MJ-06 15 82575038 82575038 C T FAM154B Missense_Mutation p.P278S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 15 83926113 83926113 G A BNC1 3'UTR 0.15 TCGA-EE-A2MJ-06 15 85164849 85164849 G A ZSCAN2 Missense_Mutation p.E475K 0.14 tolerated(0.17) probably_damaging(0.981) TCGA-EE-A2MJ-06 15 85478748 85478748 C T SLC28A1 Missense_Mutation p.S527F 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 15 86076872 86076872 C T AKAP13 Missense_Mutation p.P80L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 15 86259039 86259039 C T AKAP13 Missense_Mutation p.P1878S 0.17 deleterious(0.02) possibly_damaging(0.888) TCGA-EE-A2MJ-06 15 86822964 86822964 G A AGBL1 Missense_Mutation p.D678N 0.08 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MJ-06 15 86940638 86940638 G A AGBL1 Missense_Mutation p.G760R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 15 89074761 89074761 G A DET1 Missense_Mutation p.P70L 0.17 tolerated(0.08) benign(0.21) TCGA-EE-A2MJ-06 15 89738513 89738513 C T ABHD2 Silent p.F379F 0.09 TCGA-EE-A2MJ-06 15 90335696 90335696 G A ANPEP Missense_Mutation p.P783S 0.11 tolerated(0.19) benign(0.021) TCGA-EE-A2MJ-06 15 91308554 91308554 C T BLM Silent p.L701L 0.07 TCGA-EE-A2MJ-06 15 91419063 91419063 C T FURIN Silent p.T31T 0.12 TCGA-EE-A2MJ-06 15 91769537 91769537 C T SV2B Missense_Mutation p.P15L 0.11 tolerated_low_confidence(0.13) benign(0.066) TCGA-EE-A2MJ-06 15 91795653 91795653 G A SV2B Silent p.R229R 0.09 TCGA-EE-A2MJ-06 15 92669355 92669355 C T SLCO3A1 Silent p.L413L 0.12 TCGA-EE-A2MJ-06 15 92694235 92694235 C T SLCO3A1 Missense_Mutation p.R582C 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 15 93482839 93482839 C T CHD2 Missense_Mutation p.P195S 0.15 tolerated(0.71) benign(0.004) TCGA-EE-A2MJ-06 15 93482840 93482840 C T CHD2 Missense_Mutation p.P195L 0.16 tolerated(0.31) benign(0.001) TCGA-EE-A2MJ-06 15 94899422 94899422 G A MCTP2 Nonsense_Mutation p.W354* 0.11 TCGA-EE-A2MJ-06 15 97328431 97328431 C T SPATA8 3'UTR 0.23 TCGA-EE-A2MJ-06 16 10996560 10996560 G A CIITA Missense_Mutation p.G225E 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A2MJ-06 16 1570249 1570249 G T IFT140 Missense_Mutation p.N1252K 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 16 15730019 15730019 G A KIAA0430 Missense_Mutation p.P109S 0.21 tolerated_low_confidence(0.5) benign(0.017) TCGA-EE-A2MJ-06 16 16302666 16302666 G A ABCC6 Missense_Mutation p.S238L 0.12 deleterious(0.04) benign(0.009) TCGA-EE-A2MJ-06 16 19725860 19725860 G A KNOP1 Silent p.V166V 0.09 TCGA-EE-A2MJ-06 16 1996721 1996721 G A RPL3L Missense_Mutation p.R286C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 16 20043735 20043735 G A GPR139 Silent p.I128I 0.10 TCGA-EE-A2MJ-06 16 2028358 2028358 C T TBL3 Missense_Mutation p.H727Y 0.20 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MJ-06 16 20335565 20335565 G A GP2 Silent p.P36P 0.13 TCGA-EE-A2MJ-06 16 20548602 20548602 G A ACSM2B Missense_Mutation p.S571F 0.09 deleterious(0.01) possibly_damaging(0.888) TCGA-EE-A2MJ-06 16 20551980 20551980 C T ACSM2B Missense_Mutation p.R542K 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MJ-06 16 20975047 20975047 C T DNAH3 Missense_Mutation p.E3387K 0.09 tolerated(0.53) benign(0.001) TCGA-EE-A2MJ-06 16 20999290 20999290 C T DNAH3 Silent p.G2233G 0.18 TCGA-EE-A2MJ-06 16 21053493 21053493 G A DNAH3 Silent p.I1498I 0.08 TCGA-EE-A2MJ-06 16 21139089 21139089 C T DNAH3 Missense_Mutation p.G376E 0.08 tolerated(0.96) benign(0.058) TCGA-EE-A2MJ-06 16 21181780 21181780 C T TMEM159 Missense_Mutation p.P40L 0.11 deleterious(0.04) benign(0.323) TCGA-EE-A2MJ-06 16 2130177 2130177 C T TSC2 Missense_Mutation p.L1137F 0.28 tolerated(0.07) probably_damaging(0.987) TCGA-EE-A2MJ-06 16 21689852 21689852 C T OTOA Missense_Mutation p.T6M 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.676) TCGA-EE-A2MJ-06 16 23096193 23096193 G A USP31 Silent p.T606T 0.10 TCGA-EE-A2MJ-06 16 23226812 23226812 C T SCNN1G 3'UTR 0.15 TCGA-EE-A2MJ-06 16 24166021 24166021 G A PRKCB Missense_Mutation p.R361Q 0.27 tolerated(0.16) benign(0.039) TCGA-EE-A2MJ-06 16 24372779 24372779 C T CACNG3 Silent p.F181F 0.08 TCGA-EE-A2MJ-06 16 24582700 24582700 G A RBBP6 Missense_Mutation p.G1438E 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MJ-06 16 24582793 24582793 C T RBBP6 Missense_Mutation p.P1469L 0.15 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MJ-06 16 26147239 26147239 C T HS3ST4 Silent p.F347F 0.10 TCGA-EE-A2MJ-06 16 27556757 27556757 G A GTF3C1 Silent p.I103I 0.29 TCGA-EE-A2MJ-06 16 27561109 27561109 A G GTF3C1 Missense_Mutation p.F35L 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 16 2812796 2812796 C T SRRM2 Missense_Mutation p.S756L 0.25 unknown(0) TCGA-EE-A2MJ-06 16 2903974 2903974 G A PRSS22 Silent p.I203I 0.14 TCGA-EE-A2MJ-06 16 29998403 29998403 C T TAOK2 Missense_Mutation p.P937L 0.08 tolerated_low_confidence(0.45) benign(0.001) TCGA-EE-A2MJ-06 16 30021429 30021429 C T DOC2A Missense_Mutation p.G39R 0.17 tolerated(0.36) benign(0.003) TCGA-EE-A2MJ-06 16 30529171 30529171 C T ITGAL Silent p.I1029I 0.11 TCGA-EE-A2MJ-06 16 30532878 30532878 C T ITGAL Silent p.I1135I 0.14 TCGA-EE-A2MJ-06 16 30536709 30536709 C T ZNF768 Missense_Mutation p.R251Q 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.644) TCGA-EE-A2MJ-06 16 3063921 3063921 C T CLDN9 Silent p.P186P 0.11 TCGA-EE-A2MJ-06 16 3163412 3163412 T C ZNF205 5'UTR 0.12 TCGA-EE-A2MJ-06 16 3613657 3613657 G A NLRC3 Silent p.L474L 0.18 TCGA-EE-A2MJ-06 16 4242550 4242550 G A SRL Silent p.I342I 0.10 TCGA-EE-A2MJ-06 16 461398 461398 C T DECR2 Silent p.A233A 0.09 TCGA-EE-A2MJ-06 16 46696963 46696963 C T VPS35 Missense_Mutation p.G587R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 16 47143563 47143563 G A NETO2 Silent p.F238F 0.11 TCGA-EE-A2MJ-06 16 4793059 4793059 G A C16orf71 Missense_Mutation p.D267N 0.07 deleterious(0.01) benign(0.037) TCGA-EE-A2MJ-06 16 48162523 48162523 C T ABCC12 Silent p.K454K 0.16 TCGA-EE-A2MJ-06 16 4924582 4924582 C T UBN1 Missense_Mutation p.S724F 0.09 deleterious(0) benign(0.429) TCGA-EE-A2MJ-06 16 4924993 4925013 CCTCAGGAGGCCTGTCAGCCT - UBN1 In_Frame_Del p.G863_S869del 0.14 TCGA-EE-A2MJ-06 16 50136230 50136230 G A HEATR3 Missense_Mutation p.E602K 0.14 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MJ-06 16 50811837 50811837 T G CYLD Missense_Mutation p.W375G 0.10 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A2MJ-06 16 51171260 51171260 C T SALL1 Silent p.A1246A 0.16 TCGA-EE-A2MJ-06 16 53190396 53190396 C T CHD9 Missense_Mutation p.T132I 0.09 benign(0.187) TCGA-EE-A2MJ-06 16 53675298 53675298 C T RPGRIP1L Missense_Mutation p.G925R 0.11 tolerated(0.07) benign(0.379) TCGA-EE-A2MJ-06 16 57238655 57238655 C T RSPRY1 Missense_Mutation p.H29Y 0.17 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MJ-06 16 58001095 58001095 C T CNGB1 Silent p.E32E 0.14 TCGA-EE-A2MJ-06 16 61689535 61689535 C T CDH8 Missense_Mutation p.G582E 0.09 tolerated(0.07) probably_damaging(0.941) TCGA-EE-A2MJ-06 16 66651163 66651163 C T CMTM4 3'UTR 0.17 TCGA-EE-A2MJ-06 16 68009905 68009905 C T DPEP3 Splice_Site p.X436_splice 0.13 TCGA-EE-A2MJ-06 16 70363946 70363946 T A DDX19B Missense_Mutation p.I333N 0.10 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MJ-06 16 70363949 70363949 C T DDX19B Missense_Mutation p.A334V 0.09 deleterious(0) benign(0.059) TCGA-EE-A2MJ-06 16 71212846 71212846 C T HYDIN Silent p.L122L 0.08 TCGA-EE-A2MJ-06 16 71571469 71571469 G A CHST4 Missense_Mutation p.E297K 0.24 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 16 72163055 72163055 C T PMFBP1 Silent p.R620R 0.09 TCGA-EE-A2MJ-06 16 77401457 77401457 G A ADAMTS18 Missense_Mutation p.S220F 0.14 deleterious(0.05) benign(0.003) TCGA-EE-A2MJ-06 16 7760716 7760716 G A RBFOX1 Missense_Mutation p.R409Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 16 88967983 88967983 G A CBFA2T3 Missense_Mutation p.P78L 0.10 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-EE-A2MJ-06 16 89351875 89351875 G A ANKRD11 Missense_Mutation p.P359S 0.10 probably_damaging(0.968) TCGA-EE-A2MJ-06 16 90002125 90002125 C T TUBB3 Silent p.Y422Y 0.13 TCGA-EE-A2MJ-06 16 9857343 9857343 C T GRIN2A Missense_Mutation p.R1353K 0.24 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A2MJ-06 16 9858331 9858331 C T GRIN2A Missense_Mutation p.D1024N 0.09 tolerated_low_confidence(0.52) benign(0.003) TCGA-EE-A2MJ-06 16 9858375 9858375 C T GRIN2A Missense_Mutation p.R1009K 0.31 tolerated(1) benign(0.017) TCGA-EE-A2MJ-06 16 9858592 9858592 C T GRIN2A Missense_Mutation p.D937N 0.12 tolerated(0.51) benign(0.057) TCGA-EE-A2MJ-06 16 9858626 9858626 G A GRIN2A Silent p.I925I 0.10 TCGA-EE-A2MJ-06 17 10215934 10215934 G A MYH13 Missense_Mutation p.T1441I 0.23 deleterious(0) benign(0.129) TCGA-EE-A2MJ-06 17 10322009 10322009 G A MYH8 Missense_Mutation p.P155L 0.06 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 17 10348210 10348210 C T MYH4 Missense_Mutation p.E1825K 0.08 deleterious(0.02) possibly_damaging(0.755) TCGA-EE-A2MJ-06 17 10351229 10351229 C T MYH4 Missense_Mutation p.G1624E 0.15 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A2MJ-06 17 10355546 10355546 G A MYH4 Silent p.I1150I 0.17 TCGA-EE-A2MJ-06 17 10363379 10363379 C T MYH4 Missense_Mutation p.E436K 0.09 deleterious(0) possibly_damaging(0.495) TCGA-EE-A2MJ-06 17 10366925 10366925 G A MYH4 Silent p.P228P 0.19 TCGA-EE-A2MJ-06 17 10366926 10366926 G A MYH4 Missense_Mutation p.P228L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 17 10369992 10369992 C T MYH4 Missense_Mutation p.R24Q 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-EE-A2MJ-06 17 10395847 10395847 C T MYH1 Silent p.R1902R 0.13 TCGA-EE-A2MJ-06 17 10399641 10399641 C T MYH1 Missense_Mutation p.E1628K 0.11 deleterious(0.02) possibly_damaging(0.852) TCGA-EE-A2MJ-06 17 10400471 10400471 C T MYH1 Missense_Mutation p.G1524E 0.12 deleterious(0.01) possibly_damaging(0.673) TCGA-EE-A2MJ-06 17 10406390 10406390 T G MYH1 Missense_Mutation p.K956T 0.07 deleterious(0.01) benign(0.081) TCGA-EE-A2MJ-06 17 10432229 10432229 C T MYH2 Silent p.E1174E 0.11 TCGA-EE-A2MJ-06 17 10433037 10433037 C T MYH2 Silent p.E987E 0.13 TCGA-EE-A2MJ-06 17 10444001 10444001 A T MYH2 Silent p.I306I 0.10 TCGA-EE-A2MJ-06 17 11666774 11666774 C T DNAH9 Missense_Mutation p.P2338L 0.10 probably_damaging(0.946) TCGA-EE-A2MJ-06 17 11666784 11666784 G A DNAH9 Silent p.E2341E 0.11 TCGA-EE-A2MJ-06 17 11671843 11671843 G A DNAH9 Missense_Mutation p.G2415E 0.25 probably_damaging(0.94) TCGA-EE-A2MJ-06 17 11872808 11872808 G A DNAH9 Nonsense_Mutation p.W4475* 0.13 TCGA-EE-A2MJ-06 17 12823142 12823142 G A ARHGAP44 Missense_Mutation p.R153Q 0.29 deleterious(0) probably_damaging(0.91) TCGA-EE-A2MJ-06 17 12901800 12901800 G A ELAC2 Silent p.I483I 0.17 TCGA-EE-A2MJ-06 17 1340197 1340197 G A CRK Missense_Mutation p.P165L 0.27 tolerated(0.05) probably_damaging(0.959) TCGA-EE-A2MJ-06 17 1538059 1538059 T C SCARF1 Missense_Mutation p.E829G 0.26 tolerated_low_confidence(0.13) benign(0.231) TCGA-EE-A2MJ-06 17 15989718 15989718 G A NCOR1 Missense_Mutation p.P1019S 0.09 benign(0.026) TCGA-EE-A2MJ-06 17 16455190 16455190 C T ZNF287 Missense_Mutation p.G756S 0.08 deleterious(0.01) possibly_damaging(0.584) TCGA-EE-A2MJ-06 17 17394689 17394689 C T MED9 Silent p.I107I 0.12 TCGA-EE-A2MJ-06 17 17394690 17394690 C T MED9 Missense_Mutation p.H108Y 0.12 deleterious(0.03) benign(0.442) TCGA-EE-A2MJ-06 17 18052889 18052889 G A MYO15A Missense_Mutation p.D2403N 0.14 unknown(0) TCGA-EE-A2MJ-06 17 18675803 18675803 G A FBXW10 Silent p.T695T 0.16 TCGA-EE-A2MJ-06 17 19470507 19470507 C T SLC47A1 Silent p.I425I 0.11 TCGA-EE-A2MJ-06 17 25967724 25967724 G A LGALS9 Silent p.E86E 0.12 TCGA-EE-A2MJ-06 17 263309 263309 C T C17orf97 Silent p.F225F 0.12 TCGA-EE-A2MJ-06 17 26816316 26816316 C T SLC13A2 Missense_Mutation p.P63S 0.24 deleterious(0) possibly_damaging(0.764) TCGA-EE-A2MJ-06 17 27419372 27419372 C T MYO18A Missense_Mutation p.A1726T 0.19 tolerated(0.23) benign(0.008) TCGA-EE-A2MJ-06 17 27844579 27844579 C T TAOK1 Nonsense_Mutation p.R605* 0.08 TCGA-EE-A2MJ-06 17 27958624 27958624 G A SSH2 Silent p.S1169S 0.15 TCGA-EE-A2MJ-06 17 27958625 27958625 G A SSH2 Missense_Mutation p.S1169F 0.15 tolerated_low_confidence(0.69) benign(0.003) TCGA-EE-A2MJ-06 17 28378158 28378158 G A EFCAB5 Missense_Mutation p.R408K 0.13 tolerated(0.17) possibly_damaging(0.471) TCGA-EE-A2MJ-06 17 28384850 28384850 C T EFCAB5 Missense_Mutation p.S841F 0.21 tolerated(0.08) benign(0.103) TCGA-EE-A2MJ-06 17 29562641 29562641 C T NF1 Nonsense_Mutation p.R1241* 0.15 TCGA-EE-A2MJ-06 17 29684035 29684035 C T NF1 Missense_Mutation p.S2599F 0.11 tolerated_low_confidence(0.12) probably_damaging(0.982) TCGA-EE-A2MJ-06 17 2996055 2996055 G A OR1D2 Missense_Mutation p.P79L 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 17 2996057 2996057 G T OR1D2 Silent p.I78I 0.12 TCGA-EE-A2MJ-06 17 30677295 30677295 G A ZNF207 5'UTR 0.19 TCGA-EE-A2MJ-06 17 30932226 30932226 G A MYO1D Nonsense_Mutation p.Q915* 0.17 TCGA-EE-A2MJ-06 17 3181660 3181660 G A OR3A2 Silent p.L190L 0.15 TCGA-EE-A2MJ-06 17 3195080 3195080 C T OR3A1 Missense_Mutation p.G266D 0.10 tolerated(0.11) benign(0.424) TCGA-EE-A2MJ-06 17 3301098 3301098 C T OR1E1 Missense_Mutation p.G203R 0.17 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MJ-06 17 33749180 33749180 G A SLFN12 Missense_Mutation p.L290F 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MJ-06 17 33951501 33951501 T A AP2B1 Missense_Mutation p.I204N 0.21 deleterious(0.04) benign(0.322) TCGA-EE-A2MJ-06 17 34245331 34245331 G A RDM1 3'UTR 0.18 TCGA-EE-A2MJ-06 17 34304549 34304549 C T CCL16 3'UTR 0.18 TCGA-EE-A2MJ-06 17 35783643 35783643 C T TADA2A Silent p.C20C 0.11 TCGA-EE-A2MJ-06 17 3585200 3585200 C T P2RX5 Missense_Mutation p.E352K 0.17 tolerated(0.21) probably_damaging(0.968) TCGA-EE-A2MJ-06 17 36485159 36485159 C T GPR179 Silent p.E1431E 0.22 TCGA-EE-A2MJ-06 17 36485191 36485191 C T GPR179 Missense_Mutation p.G1421R 0.18 deleterious(0.01) benign(0.338) TCGA-EE-A2MJ-06 17 36520712 36520712 C T SOCS7 Missense_Mutation p.P311S 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 17 37902204 37902204 T C GRB7 Missense_Mutation p.S460P 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MJ-06 17 39019844 39019844 C T KRT12 Missense_Mutation p.E330K 0.12 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A2MJ-06 17 39503171 39503171 G A KRT33A Silent p.S267S 0.21 TCGA-EE-A2MJ-06 17 39551875 39551875 C T KRT31 Missense_Mutation p.E197K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 17 39580692 39580692 G A KRT37 Silent p.I28I 0.12 TCGA-EE-A2MJ-06 17 39594533 39594533 G C KRT38 Silent p.A351A 0.18 TCGA-EE-A2MJ-06 17 39777961 39777961 C T KRT17 Missense_Mutation p.E240K 0.22 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MJ-06 17 39780691 39780691 G A KRT17 Missense_Mutation p.S24L 0.39 tolerated(1) possibly_damaging(0.602) TCGA-EE-A2MJ-06 17 39912442 39912442 C T JUP Missense_Mutation p.E691K 0.08 tolerated(0.24) benign(0.034) TCGA-EE-A2MJ-06 17 40344388 40344388 G A GHDC Missense_Mutation p.R254W 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 17 41584468 41584468 C T DHX8 Missense_Mutation p.S609F 0.19 tolerated(0.06) benign(0.049) TCGA-EE-A2MJ-06 17 43348577 43348577 G A MAP3K14-AS1 3'Flank 0.12 TCGA-EE-A2MJ-06 17 4607321 4607321 G A PELP1 Missense_Mutation p.S29L 0.32 unknown(0) TCGA-EE-A2MJ-06 17 4647762 4647762 G A ZMYND15 Silent p.R561R 0.29 TCGA-EE-A2MJ-06 17 47389359 47389359 G A ZNF652 Missense_Mutation p.S365L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 17 47656183 47656183 G A NXPH3 Missense_Mutation p.A94T 0.13 tolerated(0.13) possibly_damaging(0.542) TCGA-EE-A2MJ-06 17 47900574 47900574 C T KAT7 Missense_Mutation p.S466L 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2MJ-06 17 48148254 48148254 T C ITGA3 Silent p.Y237Y 0.09 TCGA-EE-A2MJ-06 17 48155608 48155608 A T ITGA3 Missense_Mutation p.T753S 0.12 tolerated(1) benign(0.005) TCGA-EE-A2MJ-06 17 48271742 48271742 G A COL1A1 Missense_Mutation p.R528C 0.14 unknown(0) TCGA-EE-A2MJ-06 17 48773374 48773374 G A ANKRD40 Missense_Mutation p.S364L 0.17 deleterious(0) possibly_damaging(0.462) TCGA-EE-A2MJ-06 17 4927197 4927197 G A KIF1C Silent p.P1021P 0.31 TCGA-EE-A2MJ-06 17 5084794 5084794 C T ZNF594 3'UTR 0.13 TCGA-EE-A2MJ-06 17 52990072 52990072 C T TOM1L1 Silent p.L90L 0.17 TCGA-EE-A2MJ-06 17 53014581 53014581 G A TOM1L1 Missense_Mutation p.G343S 0.08 tolerated(0.23) benign(0.002) TCGA-EE-A2MJ-06 17 56051966 56051966 G A VEZF1 Silent p.H478H 0.10 TCGA-EE-A2MJ-06 17 56382511 56382511 C T BZRAP1 Missense_Mutation p.G1819S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 17 56382513 56382513 C T BZRAP1 Missense_Mutation p.R1818K 0.11 tolerated(0.09) possibly_damaging(0.491) TCGA-EE-A2MJ-06 17 56435504 56435504 A G RNF43 Missense_Mutation p.S545P 0.13 tolerated(0.31) benign(0.005) TCGA-EE-A2MJ-06 17 56693624 56693624 G A TEX14 Missense_Mutation p.L233F 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 17 56699130 56699130 C G TEX14 Missense_Mutation p.Q145H 0.28 tolerated(0.12) benign(0.071) TCGA-EE-A2MJ-06 17 58144948 58144948 G A HEATR6 Missense_Mutation p.S362F 0.28 tolerated(0.05) benign(0.259) TCGA-EE-A2MJ-06 17 59763235 59763235 G A BRIP1 Missense_Mutation p.S956L 0.10 tolerated_low_confidence(0.56) benign(0.002) TCGA-EE-A2MJ-06 17 61396360 61396360 C T TANC2 Missense_Mutation p.S421L 0.14 tolerated(0.09) benign(0.004) TCGA-EE-A2MJ-06 17 61557816 61557816 C T ACE Silent p.V258V 0.12 TCGA-EE-A2MJ-06 17 61558931 61558931 G A ACE Nonsense_Mutation p.W317* 0.16 TCGA-EE-A2MJ-06 17 61770952 61770952 C T MAP3K3 Missense_Mutation p.P597S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 17 61829717 61829717 G A CCDC47 Missense_Mutation p.S389F 0.14 tolerated(0.14) possibly_damaging(0.686) TCGA-EE-A2MJ-06 17 61958427 61958427 G A GH2 Missense_Mutation p.P85S 0.25 deleterious(0.01) benign(0.26) TCGA-EE-A2MJ-06 17 62018440 62018440 G A SCN4A Silent p.I1734I 0.11 TCGA-EE-A2MJ-06 17 63198127 63198127 C G RGS9 Missense_Mutation p.F331L 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MJ-06 17 63554133 63554133 A T AXIN2 Missense_Mutation p.S202R 0.14 deleterious(0) possibly_damaging(0.522) TCGA-EE-A2MJ-06 17 63554134 63554134 C T AXIN2 Missense_Mutation p.S202N 0.12 deleterious(0) benign(0.255) TCGA-EE-A2MJ-06 17 64026062 64026062 T A CEP112 Missense_Mutation p.K433I 0.20 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 17 6690203 6690203 C T FBXO39 Silent p.F376F 0.13 TCGA-EE-A2MJ-06 17 67084376 67084376 G A ABCA6 Silent p.F1210F 0.19 TCGA-EE-A2MJ-06 17 6915950 6915950 C T RNASEK Missense_Mutation p.S22F 0.35 deleterious_low_confidence(0.03) benign(0.05) TCGA-EE-A2MJ-06 17 72741236 72741236 C T RAB37 Intron 0.23 TCGA-EE-A2MJ-06 17 72943324 72943324 C T OTOP3 Silent p.I458I 0.18 TCGA-EE-A2MJ-06 17 72945374 72945374 G A OTOP3 Missense_Mutation p.E552K 0.12 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A2MJ-06 17 73625422 73625422 G A RECQL5 Missense_Mutation p.P694L 0.23 deleterious(0.02) benign(0.013) TCGA-EE-A2MJ-06 17 73625423 73625423 G A RECQL5 Missense_Mutation p.P694S 0.23 tolerated(0.14) benign(0.021) TCGA-EE-A2MJ-06 17 74003351 74003351 C T EVPL Missense_Mutation p.E1979K 0.10 tolerated(0.48) benign(0.439) TCGA-EE-A2MJ-06 17 74004797 74004797 G A EVPL Missense_Mutation p.R1497W 0.24 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MJ-06 17 74005812 74005812 G A EVPL Silent p.L1158L 0.11 TCGA-EE-A2MJ-06 17 74133827 74133827 G A FOXJ1 Silent p.T291T 0.13 TCGA-EE-A2MJ-06 17 74283970 74283970 C T QRICH2 Silent p.R1103R 0.10 TCGA-EE-A2MJ-06 17 7487252 7487252 C T MPDU1 Silent p.D24D 0.14 TCGA-EE-A2MJ-06 17 7487253 7487253 C T MPDU1 Nonsense_Mutation p.Q25* 0.14 TCGA-EE-A2MJ-06 17 74878364 74878364 C A MGAT5B Missense_Mutation p.H116N 0.14 tolerated(0.48) benign(0.138) TCGA-EE-A2MJ-06 17 75316401 75316401 C T SEPT9 Intron 0.31 TCGA-EE-A2MJ-06 17 75316402 75316402 C T SEPT9 Intron 0.31 TCGA-EE-A2MJ-06 17 76395592 76395592 C T PGS1 Silent p.L225L 0.16 TCGA-EE-A2MJ-06 17 76498043 76498043 G A DNAH17-AS1 3'UTR 0.17 TCGA-EE-A2MJ-06 17 76506586 76506586 C T DNAH17 Silent p.V1368V 0.39 TCGA-EE-A2MJ-06 17 76571059 76571059 C T DNAH17 Nonsense_Mutation p.W27* 0.14 TCGA-EE-A2MJ-06 17 7733619 7733619 G A DNAH2 Missense_Mutation p.G3952D 0.12 probably_damaging(1) TCGA-EE-A2MJ-06 17 78220411 78220411 C T SLC26A11 Silent p.F419F 0.29 TCGA-EE-A2MJ-06 17 78268715 78268715 C T RNF213 Silent p.F556F 0.20 TCGA-EE-A2MJ-06 17 79078372 79078372 C T BAIAP2 Silent p.G375G 0.20 TCGA-EE-A2MJ-06 17 7948190 7948190 C T ALOX15B Silent p.S240S 0.12 TCGA-EE-A2MJ-06 17 80280073 80280073 G A SECTM1 Silent p.S237S 0.08 TCGA-EE-A2MJ-06 17 80789372 80789372 C T ZNF750 Missense_Mutation p.G320E 0.08 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MJ-06 17 8219387 8219387 C T ARHGEF15 Missense_Mutation p.P542L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 17 8283225 8283225 T A RPL26 Missense_Mutation p.Q66H 0.22 deleterious(0.04) benign(0.056) TCGA-EE-A2MJ-06 17 8473084 8473084 G A MYH10 Missense_Mutation p.S237L 0.17 possibly_damaging(0.487) TCGA-EE-A2MJ-06 17 8701992 8701992 T A MFSD6L Missense_Mutation p.E149D 0.09 tolerated(0.49) benign(0.009) TCGA-EE-A2MJ-06 17 8702212 8702212 C T MFSD6L Missense_Mutation p.R76K 0.15 deleterious(0.01) possibly_damaging(0.688) TCGA-EE-A2MJ-06 17 9497522 9497522 G A WDR16 Nonsense_Mutation p.W140* 0.12 TCGA-EE-A2MJ-06 17 9820631 9820631 G A GAS7 Nonsense_Mutation p.R449* 0.14 TCGA-EE-A2MJ-06 18 10696185 10696185 C T PIEZO2 Silent p.V2246V 0.24 TCGA-EE-A2MJ-06 18 13040926 13040926 T G CEP192 Missense_Mutation p.M636R 0.14 deleterious(0.04) benign(0.071) TCGA-EE-A2MJ-06 18 13055828 13055828 C T CEP192 Missense_Mutation p.A1080V 0.16 tolerated(0.68) benign(0.003) TCGA-EE-A2MJ-06 18 13055829 13055829 C T CEP192 Silent p.A1080A 0.16 TCGA-EE-A2MJ-06 18 21495273 21495273 C T LAMA3 Silent p.F2555F 0.10 TCGA-EE-A2MJ-06 18 22806712 22806712 G A ZNF521 Silent p.T390T 0.10 TCGA-EE-A2MJ-06 18 28598661 28598661 C T DSC3 Missense_Mutation p.D350N 0.17 deleterious(0) possibly_damaging(0.619) TCGA-EE-A2MJ-06 18 2885069 2885069 C T EMILIN2 Missense_Mutation p.P122L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 18 28934476 28934476 C T DSG1 Missense_Mutation p.P773S 0.09 tolerated(0.33) benign(0.035) TCGA-EE-A2MJ-06 18 28972242 28972242 G A DSG4 Missense_Mutation p.G315E 0.26 deleterious(0) probably_damaging(0.929) TCGA-EE-A2MJ-06 18 2934435 2934435 T G LPIN2 Missense_Mutation p.R394S 0.10 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MJ-06 18 29867099 29867099 G A GAREM Silent p.S487S 0.10 TCGA-EE-A2MJ-06 18 32920427 32920427 G A ZNF24 Missense_Mutation p.S63L 0.16 deleterious(0) possibly_damaging(0.637) TCGA-EE-A2MJ-06 18 335158 335158 C T COLEC12 Missense_Mutation p.G467E 0.22 deleterious(0) unknown(0) TCGA-EE-A2MJ-06 18 39629602 39629602 T G PIK3C3 Intron 0.13 TCGA-EE-A2MJ-06 18 40500669 40500669 G A RIT2 Intron 0.15 TCGA-EE-A2MJ-06 18 44426698 44426698 G A PIAS2 Missense_Mutation p.S278F 0.09 tolerated(0.4) possibly_damaging(0.585) TCGA-EE-A2MJ-06 18 47101747 47101747 C T LIPG Missense_Mutation p.P194S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 18 47101748 47101748 C A LIPG Missense_Mutation p.P194H 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 18 47563245 47563245 C T MYO5B Missense_Mutation p.E144K 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 18 56203775 56203775 G A ALPK2 Missense_Mutation p.S1215F 0.10 deleterious(0.02) possibly_damaging(0.671) TCGA-EE-A2MJ-06 18 57103113 57103113 C T CCBE1 3'UTR 0.18 TCGA-EE-A2MJ-06 18 60241435 60241435 C T ZCCHC2 Silent p.P707P 0.17 TCGA-EE-A2MJ-06 18 61160312 61160312 C T SERPINB5 Missense_Mutation p.P184L 0.09 tolerated(0.06) benign(0.107) TCGA-EE-A2MJ-06 18 61379812 61379812 G A SERPINB11 Missense_Mutation p.G81E 0.14 tolerated(0.1) benign(0.323) TCGA-EE-A2MJ-06 18 61390410 61390410 G A SERPINB11 Missense_Mutation p.G319E 0.24 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A2MJ-06 18 61649006 61649006 T A SERPINB8 Missense_Mutation p.S120T 0.10 deleterious(0) benign(0.41) TCGA-EE-A2MJ-06 18 63477217 63477217 C T CDH7 Missense_Mutation p.P163L 0.08 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MJ-06 18 63489411 63489411 A T CDH7 Silent p.G240G 0.17 TCGA-EE-A2MJ-06 18 65178609 65178609 G A DSEL Silent p.F1089F 0.11 TCGA-EE-A2MJ-06 18 67993118 67993118 C T SOCS6 Missense_Mutation p.S405F 0.12 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 18 6942202 6942202 G A LAMA1 Missense_Mutation p.S3035L 0.17 tolerated(0.07) probably_damaging(0.913) TCGA-EE-A2MJ-06 18 77170533 77170533 C T NFATC1 Silent p.P73P 0.11 TCGA-EE-A2MJ-06 19 10112453 10112453 C T COL5A3 Silent p.T318T 0.11 TCGA-EE-A2MJ-06 19 10114307 10114307 C T COL5A3 Silent p.G261G 0.09 TCGA-EE-A2MJ-06 19 1011972 1011972 C - TMEM259 Frame_Shift_Del p.S288Rfs*8 0.15 TCGA-EE-A2MJ-06 19 10270547 10270547 G A DNMT1 Missense_Mutation p.L381F 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MJ-06 19 10335343 10335343 A G S1PR2 Missense_Mutation p.L80P 0.28 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 19 10418878 10418878 C T ZGLP1 Silent p.Q160Q 0.15 TCGA-EE-A2MJ-06 19 10694304 10694304 G A AP1M2 Missense_Mutation p.S82F 0.10 tolerated(0.46) possibly_damaging(0.824) TCGA-EE-A2MJ-06 19 11569322 11569322 G A ELAVL3 Silent p.S146S 0.12 TCGA-EE-A2MJ-06 19 12800361 12800361 G A FBXW9 Silent p.T410T 0.18 TCGA-EE-A2MJ-06 19 12856529 12856529 C T ASNA1 Missense_Mutation p.R189W 0.11 deleterious(0.02) benign(0.022) TCGA-EE-A2MJ-06 19 12976231 12976231 C T MAST1 Silent p.F580F 0.20 TCGA-EE-A2MJ-06 19 13928098 13928098 A T ZSWIM4 Missense_Mutation p.I417F 0.10 deleterious(0) unknown(0) TCGA-EE-A2MJ-06 19 14157400 14157400 C T IL27RA Missense_Mutation p.P371S 0.09 deleterious(0.03) possibly_damaging(0.859) TCGA-EE-A2MJ-06 19 14162442 14162442 C T IL27RA Silent p.L518L 0.08 TCGA-EE-A2MJ-06 19 14769331 14769331 C T EMR3 Silent p.R129R 0.08 TCGA-EE-A2MJ-06 19 15061145 15061145 G A SLC1A6 Silent p.I519I 0.13 TCGA-EE-A2MJ-06 19 15164443 15164443 G A CASP14 Splice_Site p.X59_splice 0.23 TCGA-EE-A2MJ-06 19 15795671 15795671 G A CYP4F12 Missense_Mutation p.A322T 0.11 deleterious(0.02) possibly_damaging(0.734) TCGA-EE-A2MJ-06 19 15918161 15918161 G A OR10H1 Silent p.I229I 0.10 TCGA-EE-A2MJ-06 19 16545262 16545262 G A EPS15L1 Missense_Mutation p.L138F 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 19 16545263 16545263 G A EPS15L1 Silent p.S137S 0.10 TCGA-EE-A2MJ-06 19 16884103 16884103 C T NWD1 Silent p.P859P 0.29 TCGA-EE-A2MJ-06 19 16974544 16974544 C T SIN3B Silent p.F472F 0.15 TCGA-EE-A2MJ-06 19 16980351 16980351 C T SIN3B Silent p.I661I 0.21 TCGA-EE-A2MJ-06 19 16980352 16980352 C T SIN3B Silent p.L662L 0.21 TCGA-EE-A2MJ-06 19 17014415 17014415 C T CPAMD8 Missense_Mutation p.G1523R 0.13 tolerated(0.23) possibly_damaging(0.73) TCGA-EE-A2MJ-06 19 17186219 17186219 G A HAUS8 Missense_Mutation p.S5L 0.12 tolerated(0.13) benign(0.006) TCGA-EE-A2MJ-06 19 17308652 17308652 C T MYO9B Silent p.S1366S 0.14 TCGA-EE-A2MJ-06 19 17412092 17412092 C T ABHD8 Missense_Mutation p.E112K 0.23 deleterious_low_confidence(0.04) benign(0.424) TCGA-EE-A2MJ-06 19 17412093 17412093 C T ABHD8 Silent p.G111G 0.25 TCGA-EE-A2MJ-06 19 19337477 19337477 T A NCAN Missense_Mutation p.L419M 0.19 tolerated(0.12) possibly_damaging(0.832) TCGA-EE-A2MJ-06 19 19627014 19627014 C T NDUFA13 5'UTR 0.17 TCGA-EE-A2MJ-06 19 2252649 2252649 C T JSRP1 Silent p.E225E 0.27 TCGA-EE-A2MJ-06 19 22941498 22941498 C T ZNF99 Missense_Mutation p.A405T 0.11 tolerated(0.17) probably_damaging(0.961) TCGA-EE-A2MJ-06 19 2425883 2425883 G A TIMM13 3'UTR 0.14 TCGA-EE-A2MJ-06 19 2832352 2832352 C T ZNF554 Missense_Mutation p.S102F 0.18 deleterious(0.03) benign(0.023) TCGA-EE-A2MJ-06 19 31038970 31038970 A G ZNF536 Missense_Mutation p.Q815R 0.09 tolerated(0.08) benign(0.103) TCGA-EE-A2MJ-06 19 313599 313599 G A MIER2 Missense_Mutation p.P234S 0.16 tolerated(0.37) probably_damaging(0.966) TCGA-EE-A2MJ-06 19 313632 313632 C T MIER2 Missense_Mutation p.E223K 0.19 deleterious(0.01) possibly_damaging(0.541) TCGA-EE-A2MJ-06 19 35434309 35434309 C T ZNF30 Missense_Mutation p.P148S 0.12 tolerated(0.1) possibly_damaging(0.459) TCGA-EE-A2MJ-06 19 3590119 3590119 C T GIPC3 Silent p.F290F 0.21 TCGA-EE-A2MJ-06 19 36831496 36831496 A G ZFP14 Missense_Mutation p.L411P 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 19 3730061 3730061 C T TJP3 Missense_Mutation p.S74F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 19 3736275 3736275 C G TJP3 Missense_Mutation p.P423A 0.13 tolerated(0.09) benign(0.152) TCGA-EE-A2MJ-06 19 37643927 37643927 G A ZNF585A Missense_Mutation p.H237Y 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2MJ-06 19 37644244 37644244 A T ZNF585A Missense_Mutation p.F131Y 0.19 tolerated(1) benign(0.001) TCGA-EE-A2MJ-06 19 37677345 37677345 T C ZNF585B Missense_Mutation p.Y365C 0.09 tolerated(0.18) probably_damaging(0.995) TCGA-EE-A2MJ-06 19 38189016 38189016 G A ZNF607 Silent p.P672P 0.09 TCGA-EE-A2MJ-06 19 38189017 38189017 G A ZNF607 Missense_Mutation p.P672L 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MJ-06 19 38190382 38190382 C T ZNF607 Missense_Mutation p.R217K 0.14 tolerated(0.1) possibly_damaging(0.709) TCGA-EE-A2MJ-06 19 38200709 38200709 G A ZNF607 Silent p.F8F 0.09 TCGA-EE-A2MJ-06 19 38610071 38610071 C T SIPA1L3 Missense_Mutation p.A806V 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 19 38900718 38900718 C T RASGRP4 Missense_Mutation p.D662N 0.18 tolerated_low_confidence(0.12) benign(0.018) TCGA-EE-A2MJ-06 19 38911592 38911592 C T RASGRP4 Silent p.G111G 0.11 TCGA-EE-A2MJ-06 19 38976641 38976641 C T RYR1 Silent p.F1782F 0.14 TCGA-EE-A2MJ-06 19 38980039 38980039 G A RYR1 Missense_Mutation p.E1924K 0.09 probably_damaging(0.934) TCGA-EE-A2MJ-06 19 39297114 39297114 G A LGALS4 Missense_Mutation p.P154L 0.10 tolerated(0.08) benign(0.01) TCGA-EE-A2MJ-06 19 39338074 39338074 C T HNRNPL Missense_Mutation p.E90K 0.18 deleterious(0.02) benign(0.014) TCGA-EE-A2MJ-06 19 39338075 39338075 C T HNRNPL Splice_Site p.X90_splice 0.17 TCGA-EE-A2MJ-06 19 3976654 3976654 G A EEF2 Silent p.F825F 0.45 TCGA-EE-A2MJ-06 19 39804579 39804579 G A LRFN1 Silent p.L466L 0.32 TCGA-EE-A2MJ-06 19 39915567 39915567 C T PLEKHG2 Missense_Mutation p.S1265F 0.18 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-EE-A2MJ-06 19 40318979 40318979 G A DYRK1B Silent p.I255I 0.37 TCGA-EE-A2MJ-06 19 40719487 40719487 C T MAP3K10 Missense_Mutation p.S634F 0.20 deleterious(0) possibly_damaging(0.451) TCGA-EE-A2MJ-06 19 40886322 40886322 C T HIPK4 Missense_Mutation p.G526R 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-EE-A2MJ-06 19 41442339 41442339 G A CYP2B7P RNA 0.21 TCGA-EE-A2MJ-06 19 41510263 41510263 G A CYP2B6 Missense_Mutation p.M132I 0.37 deleterious(0) benign(0.237) TCGA-EE-A2MJ-06 19 42260627 42260627 C T CEA Intron 0.08 TCGA-EE-A2MJ-06 19 42396791 42396791 T C ARHGEF1 Missense_Mutation p.L177P 0.23 tolerated(0.19) probably_damaging(0.994) TCGA-EE-A2MJ-06 19 42752515 42752515 G A ERF 3'UTR 0.40 TCGA-EE-A2MJ-06 19 42818673 42818673 G T TMEM145 Missense_Mutation p.G89V 0.23 tolerated(0.07) benign(0.009) TCGA-EE-A2MJ-06 19 43257451 43257451 G A PSG8 3'Flank 0.32 TCGA-EE-A2MJ-06 19 43349217 43349217 C T PSG10P RNA 0.20 TCGA-EE-A2MJ-06 19 43382178 43382178 G A PSG1 Missense_Mutation p.S106F 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 19 43433835 43433835 G A PSG7 Silent p.F156F 0.18 TCGA-EE-A2MJ-06 19 43579707 43579707 C T PSG2 Missense_Mutation p.D170N 0.11 deleterious(0.03) benign(0.01) TCGA-EE-A2MJ-06 19 43689184 43689184 C T PSG5 Silent p.Q60Q 0.40 TCGA-EE-A2MJ-06 19 43697483 43697483 G A PSG4 3'UTR 0.18 TCGA-EE-A2MJ-06 19 43702411 43702411 G A PSG4 Silent p.P149P 0.22 TCGA-EE-A2MJ-06 19 44591290 44591290 C T ZNF284 Silent p.C553C 0.16 TCGA-EE-A2MJ-06 19 44891169 44891169 G A ZNF285 Missense_Mutation p.S413F 0.19 tolerated(0.07) probably_damaging(0.969) TCGA-EE-A2MJ-06 19 44891757 44891757 G A ZNF285 Missense_Mutation p.S217L 0.27 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A2MJ-06 19 44932416 44932416 C T ZNF229 3'UTR 0.18 TCGA-EE-A2MJ-06 19 45506214 45506214 C T RELB Silent p.P38P 0.25 TCGA-EE-A2MJ-06 19 45976161 45976161 C T FOSB Missense_Mutation p.S303L 0.29 tolerated(0.09) possibly_damaging(0.706) TCGA-EE-A2MJ-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.16 TCGA-EE-A2MJ-06 19 46299105 46299105 G A RSPH6A 3'UTR 0.22 TCGA-EE-A2MJ-06 19 47177968 47177968 G A PRKD2 Nonsense_Mutation p.R817* 0.23 TCGA-EE-A2MJ-06 19 47177969 47177969 G A PRKD2 Silent p.L816L 0.24 TCGA-EE-A2MJ-06 19 47856294 47856294 C T DHX34 Missense_Mutation p.P3S 0.38 tolerated_low_confidence(0.09) benign(0.015) TCGA-EE-A2MJ-06 19 49464205 49464205 C T BAX Missense_Mutation p.R170C 0.27 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-EE-A2MJ-06 19 49469913 49469913 C T FTL Missense_Mutation p.T150I 0.19 deleterious(0.02) possibly_damaging(0.671) TCGA-EE-A2MJ-06 19 51363189 51363189 G A KLK3 Intron 0.31 TCGA-EE-A2MJ-06 19 51446984 51446984 C T KLK5 Missense_Mutation p.G262E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 19 51446985 51446985 C T KLK5 Missense_Mutation p.G262R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 19 51452207 51452207 T A KLK5 Missense_Mutation p.K167I 0.18 tolerated(0.18) benign(0.201) TCGA-EE-A2MJ-06 19 51480880 51480880 G A KLK7 Missense_Mutation p.P225L 0.14 deleterious(0.03) probably_damaging(0.924) TCGA-EE-A2MJ-06 19 51729197 51729197 C T CD33 Missense_Mutation p.S186F 0.18 deleterious(0) possibly_damaging(0.734) TCGA-EE-A2MJ-06 19 51738413 51738413 G A CD33 Silent p.G249G 0.10 TCGA-EE-A2MJ-06 19 51957508 51957508 C T SIGLEC8 Missense_Mutation p.E404K 0.12 tolerated(0.24) benign(0.006) TCGA-EE-A2MJ-06 19 51986373 51986373 C T CEACAM18 Missense_Mutation p.S320F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 19 52003401 52003401 C T SIGLEC12 Missense_Mutation p.G194E 0.13 tolerated(0.14) possibly_damaging(0.546) TCGA-EE-A2MJ-06 19 52327053 52327053 G A FPR3 Missense_Mutation p.E18K 0.21 tolerated(0.33) benign(0.022) TCGA-EE-A2MJ-06 19 52327944 52327944 C T FPR3 Missense_Mutation p.R315C 0.10 deleterious(0.04) benign(0.015) TCGA-EE-A2MJ-06 19 52857608 52857608 G A ZNF610 Missense_Mutation p.E99K 0.23 tolerated(0.12) benign(0.019) TCGA-EE-A2MJ-06 19 53268876 53268876 G A ZNF600 Silent p.H711H 0.10 TCGA-EE-A2MJ-06 19 53573069 53573069 G A ZNF160 Missense_Mutation p.H240Y 0.33 tolerated(0.19) benign(0) TCGA-EE-A2MJ-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.19 TCGA-EE-A2MJ-06 19 53958887 53958887 C T ZNF761 RNA 0.24 TCGA-EE-A2MJ-06 19 54177496 54177496 G A MIR498 RNA 0.27 TCGA-EE-A2MJ-06 19 54203293 54203293 G A MIR518F RNA 0.09 TCGA-EE-A2MJ-06 19 54515331 54515331 G A CACNG6 Missense_Mutation p.G224D 0.33 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2MJ-06 19 54627880 54627880 G T PRPF31 Missense_Mutation p.V234L 0.16 tolerated(0.22) benign(0.004) TCGA-EE-A2MJ-06 19 55019160 55019160 G A LAIR2 Missense_Mutation p.G42E 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 19 55086440 55086440 G A LILRA2 Missense_Mutation p.D199N 0.08 tolerated(0.11) possibly_damaging(0.767) TCGA-EE-A2MJ-06 19 55110717 55110717 C T LILRA1 Silent p.L426L 0.13 TCGA-EE-A2MJ-06 19 55142543 55142543 G A LILRB1 Missense_Mutation p.V7I 0.30 tolerated(0.05) benign(0.055) TCGA-EE-A2MJ-06 19 55144767 55144767 C T LILRB1 Missense_Mutation p.S420L 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A2MJ-06 19 55146187 55146187 C T LILRB1 Nonsense_Mutation p.R487* 0.29 TCGA-EE-A2MJ-06 19 55221625 55221625 C T AC098784.2 3'Flank 0.15 TCGA-EE-A2MJ-06 19 55263938 55263938 C T KIR2DL3 Silent p.I331I 0.28 TCGA-EE-A2MJ-06 19 55399440 55399440 C T FCAR Missense_Mutation p.S143F 0.29 tolerated(0.06) probably_damaging(0.99) TCGA-EE-A2MJ-06 19 55494640 55494640 G A NLRP2 Missense_Mutation p.R525K 0.12 tolerated(0.72) benign(0.085) TCGA-EE-A2MJ-06 19 55692991 55692991 G A PTPRH 3'UTR 0.54 TCGA-EE-A2MJ-06 19 56206615 56206615 C T EPN1 Missense_Mutation p.P628S 0.23 tolerated(0.07) possibly_damaging(0.57) TCGA-EE-A2MJ-06 19 56369483 56369483 G A NLRP4 Missense_Mutation p.E242K 0.12 tolerated(0.16) benign(0.152) TCGA-EE-A2MJ-06 19 56370434 56370434 G A NLRP4 Missense_Mutation p.E559K 0.31 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 19 56410206 56410206 C T NLRP13 Missense_Mutation p.D963N 0.30 tolerated(0.19) possibly_damaging(0.486) TCGA-EE-A2MJ-06 19 56423114 56423114 G A NLRP13 Missense_Mutation p.S690F 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 19 56487502 56487502 G A NLRP8 Silent p.L903L 0.41 TCGA-EE-A2MJ-06 19 56694533 56694533 C T GALP Missense_Mutation p.P83S 0.23 tolerated(0.23) benign(0.006) TCGA-EE-A2MJ-06 19 56973722 56973722 C T ZNF667 Silent p.G6G 0.19 TCGA-EE-A2MJ-06 19 57086037 57086037 C T ZNF470 Missense_Mutation p.S73F 0.39 deleterious(0) possibly_damaging(0.48) TCGA-EE-A2MJ-06 19 57326320 57326320 C T PEG3 Missense_Mutation p.E1164K 0.16 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2MJ-06 19 57326512 57326512 C T PEG3 Missense_Mutation p.D1100N 0.20 tolerated(0.17) possibly_damaging(0.517) TCGA-EE-A2MJ-06 19 57646230 57646230 G A ZIM3 3'UTR 0.13 TCGA-EE-A2MJ-06 19 57672125 57672125 G A DUXA Silent p.F22F 0.30 TCGA-EE-A2MJ-06 19 57743922 57743922 C T AURKC Silent p.I103I 0.10 TCGA-EE-A2MJ-06 19 58003528 58003528 G A ZNF419 Missense_Mutation p.E84K 0.08 tolerated(0.99) benign(0) TCGA-EE-A2MJ-06 19 58190186 58190186 C T ZSCAN4 Silent p.Y405Y 0.22 TCGA-EE-A2MJ-06 19 58441905 58441905 T A ZNF418 Missense_Mutation p.E8D 0.10 tolerated(0.07) possibly_damaging(0.874) TCGA-EE-A2MJ-06 19 5867295 5867295 A G FUT5 Missense_Mutation p.F148L 0.17 tolerated(0.1) benign(0.044) TCGA-EE-A2MJ-06 19 6190715 6190715 T C ACSBG2 Intron 0.17 TCGA-EE-A2MJ-06 19 6854093 6854093 G A VAV1 Missense_Mutation p.G823E 0.24 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MJ-06 19 758707 758707 G A MISP Silent p.R587R 0.14 TCGA-EE-A2MJ-06 19 7703652 7703652 G A STXBP2 Silent p.G26G 0.13 TCGA-EE-A2MJ-06 19 7807893 7807893 G A CD209 3'UTR 0.13 TCGA-EE-A2MJ-06 19 804074 804074 C G PTBP1 Missense_Mutation p.R52G 0.14 deleterious(0.02) benign(0.178) TCGA-EE-A2MJ-06 19 810903 810903 G A PTBP1 3'UTR 0.16 TCGA-EE-A2MJ-06 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.25 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2MJ-06 19 8436235 8436235 T C ANGPTL4 Missense_Mutation p.S290P 0.23 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 19 8436237 8436237 C T ANGPTL4 Silent p.S290S 0.23 TCGA-EE-A2MJ-06 19 8665875 8665875 C T ADAMTS10 Silent p.K249K 0.13 TCGA-EE-A2MJ-06 19 9057542 9057542 C T MUC16 Silent p.Q9968Q 0.12 TCGA-EE-A2MJ-06 19 9060102 9060102 G A MUC16 Missense_Mutation p.S9115L 0.11 unknown(0) TCGA-EE-A2MJ-06 19 9065577 9065577 G A MUC16 Missense_Mutation p.S7290F 0.20 unknown(0) TCGA-EE-A2MJ-06 19 9066477 9066477 G A MUC16 Missense_Mutation p.S6990F 0.07 unknown(0) TCGA-EE-A2MJ-06 19 9072101 9072101 C T MUC16 Silent p.K5115K 0.17 TCGA-EE-A2MJ-06 19 9084607 9084607 G A MUC16 Missense_Mutation p.S2403F 0.28 unknown(0) TCGA-EE-A2MJ-06 19 9296893 9296893 T A OR7D2 Missense_Mutation p.F146I 0.26 deleterious_low_confidence(0.01) benign(0.062) TCGA-EE-A2MJ-06 19 9577806 9577806 C T ZNF560 Missense_Mutation p.G606E 0.19 tolerated(0.09) probably_damaging(0.986) TCGA-EE-A2MJ-06 1 100152287 100152287 G A PALMD Missense_Mutation p.E103K 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 100346653 100346653 C T AGL Missense_Mutation p.L641F 0.19 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A2MJ-06 1 10316344 10316344 C T KIF1B Missense_Mutation p.S49F 0.18 deleterious(0) possibly_damaging(0.616) TCGA-EE-A2MJ-06 1 104121994 104121994 G A AMY2B Missense_Mutation p.G470R 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 109380268 109380268 C T AKNAD1 Missense_Mutation p.M480I 0.16 tolerated(1) benign(0) TCGA-EE-A2MJ-06 1 109428193 109428193 C T GPSM2 Missense_Mutation p.R17C 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.732) TCGA-EE-A2MJ-06 1 109513943 109513943 C T WDR47 3'UTR 0.14 TCGA-EE-A2MJ-06 1 109794276 109794276 C T CELSR2 Silent p.L525L 0.19 TCGA-EE-A2MJ-06 1 11008428 11008428 G A C1orf127 Silent p.F588F 0.12 TCGA-EE-A2MJ-06 1 110301246 110301246 C T EPS8L3 Nonsense_Mutation p.W168* 0.18 TCGA-EE-A2MJ-06 1 111060470 111060470 G A KCNA10 Missense_Mutation p.P314S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 111490995 111490995 T A LRIF1 Silent p.A632A 0.21 TCGA-EE-A2MJ-06 1 114499826 114499826 C T HIPK1 Missense_Mutation p.P558L 0.19 tolerated(0.69) benign(0.042) TCGA-EE-A2MJ-06 1 115238086 115238086 G A AMPD1 Silent p.L36L 0.07 TCGA-EE-A2MJ-06 1 115600175 115600175 C T TSPAN2 Missense_Mutation p.E167K 0.06 tolerated(0.5) benign(0.001) TCGA-EE-A2MJ-06 1 11589905 11589905 G A PTCHD2 Silent p.G997G 0.13 TCGA-EE-A2MJ-06 1 1164002 1164002 G A SDF4 Missense_Mutation p.P58S 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 1 117156498 117156498 G A IGSF3 Nonsense_Mutation p.Q241* 0.14 TCGA-EE-A2MJ-06 1 117311214 117311214 C T CD2 Missense_Mutation p.R289C 0.15 deleterious(0.04) benign(0.105) TCGA-EE-A2MJ-06 1 118499763 118499763 C T WDR3 Silent p.F842F 0.19 TCGA-EE-A2MJ-06 1 120301832 120301832 C T HMGCS2 Silent p.V253V 0.11 TCGA-EE-A2MJ-06 1 120307109 120307109 C T HMGCS2 Missense_Mutation p.G82E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 12343669 12343669 C T VPS13D Missense_Mutation p.S1837F 0.09 probably_damaging(0.989) TCGA-EE-A2MJ-06 1 12887160 12887160 G A PRAMEF11 Missense_Mutation p.L233F 0.12 deleterious(0.05) benign(0.176) TCGA-EE-A2MJ-06 1 12887503 12887503 C T PRAMEF11 Silent p.R118R 0.18 TCGA-EE-A2MJ-06 1 12907304 12907304 C T HNRNPCL1 Missense_Mutation p.G280E 0.10 deleterious(0.04) probably_damaging(0.964) TCGA-EE-A2MJ-06 1 12907509 12907509 C T HNRNPCL1 Missense_Mutation p.E212K 0.08 tolerated(0.62) benign(0.017) TCGA-EE-A2MJ-06 1 12908062 12908062 A C HNRNPCL1 Silent p.V27V 0.08 TCGA-EE-A2MJ-06 1 12921458 12921458 G A PRAMEF2 Missense_Mutation p.E417K 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 1 14059318 14059318 C T PRDM2 Missense_Mutation p.P58S 0.09 probably_damaging(0.998) TCGA-EE-A2MJ-06 1 142713866 142713866 C T RP11-417J8.6 RNA 0.32 TCGA-EE-A2MJ-06 1 144865929 144865929 C T PDE4DIP Missense_Mutation p.G1884E 0.05 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 1 144879386 144879386 C T PDE4DIP Missense_Mutation p.R1355Q 0.05 tolerated(1) benign(0.013) TCGA-EE-A2MJ-06 1 145301742 145301742 C T NBPF10 Silent p.L337L 0.10 TCGA-EE-A2MJ-06 1 145416641 145416641 G A HFE2 Missense_Mutation p.R329Q 0.11 tolerated(0.45) benign(0.184) TCGA-EE-A2MJ-06 1 145538752 145538752 C T ITGA10 Missense_Mutation p.H955Y 0.11 deleterious(0.02) benign(0.031) TCGA-EE-A2MJ-06 1 145585607 145585607 C T PIAS3 Silent p.I624I 0.22 TCGA-EE-A2MJ-06 1 147092820 147092820 C T BCL9 Silent p.P953P 0.15 TCGA-EE-A2MJ-06 1 147230527 147230527 C T GJA5 Missense_Mutation p.G274S 0.25 tolerated(0.68) benign(0.002) TCGA-EE-A2MJ-06 1 149905553 149905553 G A MTMR11 Silent p.L270L 0.20 TCGA-EE-A2MJ-06 1 150256268 150256268 G A C1orf51 Silent p.L140L 0.13 TCGA-EE-A2MJ-06 1 150445226 150445226 C T RPRD2 Missense_Mutation p.P1268S 0.09 tolerated_low_confidence(0.42) benign(0.008) TCGA-EE-A2MJ-06 1 150469306 150469306 C T TARS2 Silent p.F314F 0.16 TCGA-EE-A2MJ-06 1 150483433 150483433 C T ECM1 Missense_Mutation p.S183F 0.11 tolerated(0.49) benign(0.004) TCGA-EE-A2MJ-06 1 150483434 150483434 C T ECM1 Silent p.S183S 0.10 TCGA-EE-A2MJ-06 1 150913808 150913808 C T SETDB1 Missense_Mutation p.R151C 0.17 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-EE-A2MJ-06 1 151262922 151262922 G A ZNF687 Missense_Mutation p.G1031E 0.17 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MJ-06 1 151314893 151314893 G A RFX5 Silent p.S540S 0.23 TCGA-EE-A2MJ-06 1 151314894 151314894 G A RFX5 Missense_Mutation p.S540F 0.24 tolerated_low_confidence(0.14) benign(0.009) TCGA-EE-A2MJ-06 1 151748309 151748309 C T TDRKH Silent p.R423R 0.28 TCGA-EE-A2MJ-06 1 152129231 152129231 C T RPTN Missense_Mutation p.G115E 0.14 tolerated(1) benign(0.009) TCGA-EE-A2MJ-06 1 152281478 152281478 C T FLG Missense_Mutation p.E1962K 0.09 benign(0.305) TCGA-EE-A2MJ-06 1 152282627 152282627 C T FLG Missense_Mutation p.G1579R 0.08 probably_damaging(0.988) TCGA-EE-A2MJ-06 1 152323257 152323257 C T FLG2 Silent p.R2335R 0.09 TCGA-EE-A2MJ-06 1 152326405 152326405 T C FLG2 Missense_Mutation p.H1286R 0.08 benign(0.001) TCGA-EE-A2MJ-06 1 152382994 152382994 C T CRNN Silent p.Q188Q 0.09 TCGA-EE-A2MJ-06 1 152975587 152975587 G A SPRR3 Missense_Mutation p.E31K 0.15 tolerated(0.11) benign(0.278) TCGA-EE-A2MJ-06 1 153177294 153177294 G A LELP1 Silent p.K37K 0.27 TCGA-EE-A2MJ-06 1 153362527 153362527 T A S100A8 3'UTR 0.14 TCGA-EE-A2MJ-06 1 153409698 153409698 C T S100A7L2 Missense_Mutation p.E59K 0.25 tolerated(0.1) possibly_damaging(0.801) TCGA-EE-A2MJ-06 1 153719460 153719460 C T INTS3 Missense_Mutation p.R116C 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 153744397 153744397 C T INTS3 Missense_Mutation p.S893F 0.16 tolerated(0.1) benign(0.007) TCGA-EE-A2MJ-06 1 153744398 153744398 C T INTS3 Silent p.S893S 0.16 TCGA-EE-A2MJ-06 1 15392187 15392187 C T KAZN Missense_Mutation p.S387F 0.13 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2MJ-06 1 153957211 153957211 G A RAB13 Silent p.I57I 0.36 TCGA-EE-A2MJ-06 1 153964547 153964547 C T RPS27 Missense_Mutation p.S78F 0.08 deleterious(0.01) benign(0.229) TCGA-EE-A2MJ-06 1 154218774 154218774 C T UBAP2L Missense_Mutation p.P313S 0.08 tolerated(0.63) unknown(0) TCGA-EE-A2MJ-06 1 154218775 154218775 C T UBAP2L Missense_Mutation p.P313L 0.08 deleterious(0.01) unknown(0) TCGA-EE-A2MJ-06 1 154315303 154315303 C T ATP8B2 Missense_Mutation p.P473L 0.16 tolerated(0.1) benign(0.367) TCGA-EE-A2MJ-06 1 154685942 154685942 T C KCNN3 Missense_Mutation p.K633E 0.08 deleterious(0) possibly_damaging(0.546) TCGA-EE-A2MJ-06 1 154962903 154962903 C T FLAD1 Missense_Mutation p.L485F 0.15 tolerated(0.14) possibly_damaging(0.893) TCGA-EE-A2MJ-06 1 155011906 155011906 C T DCST1 Missense_Mutation p.S97F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 155175068 155175068 G A THBS3 Missense_Mutation p.A109V 0.09 tolerated(0.74) benign(0.004) TCGA-EE-A2MJ-06 1 155629364 155629364 G A YY1AP1 3'UTR 0.15 TCGA-EE-A2MJ-06 1 155774905 155774905 G A GON4L Nonsense_Mutation p.R494* 0.12 TCGA-EE-A2MJ-06 1 155920222 155920222 G A ARHGEF2 Missense_Mutation p.H919Y 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.696) TCGA-EE-A2MJ-06 1 155920223 155920223 G A ARHGEF2 Silent p.V918V 0.15 TCGA-EE-A2MJ-06 1 156518436 156518436 G A IQGAP3 Missense_Mutation p.P644S 0.08 tolerated(0.32) benign(0.005) TCGA-EE-A2MJ-06 1 156622516 156622516 C T BCAN Missense_Mutation p.P592S 0.20 tolerated(0.1) benign(0.015) TCGA-EE-A2MJ-06 1 156622517 156622517 C T BCAN Missense_Mutation p.P592L 0.19 tolerated(0.06) benign(0.008) TCGA-EE-A2MJ-06 1 156694055 156694055 G A ISG20L2 Missense_Mutation p.S278F 0.12 tolerated(0.08) possibly_damaging(0.844) TCGA-EE-A2MJ-06 1 156779463 156779463 C T SH2D2A Missense_Mutation p.G245E 0.21 tolerated(0.7) benign(0.06) TCGA-EE-A2MJ-06 1 156812213 156812213 G A INSRR Nonsense_Mutation p.R1072* 0.11 TCGA-EE-A2MJ-06 1 157105324 157105324 G A ETV3 Missense_Mutation p.L75F 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 157105325 157105325 G A ETV3 Silent p.R74R 0.14 TCGA-EE-A2MJ-06 1 158324390 158324390 G A CD1E Silent p.Q94Q 0.24 TCGA-EE-A2MJ-06 1 158436071 158436071 C T OR10K1 Silent p.T240T 0.09 TCGA-EE-A2MJ-06 1 158549373 158549373 C T OR10X1 Missense_Mutation p.R106K 0.10 tolerated(0.25) benign(0.014) TCGA-EE-A2MJ-06 1 158576847 158576847 C T OR10Z1 Missense_Mutation p.L207F 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 158624529 158624529 C T SPTA1 Missense_Mutation p.A970T 0.11 tolerated(0.2) benign(0.098) TCGA-EE-A2MJ-06 1 158624530 158624530 C T SPTA1 Silent p.Q969Q 0.11 TCGA-EE-A2MJ-06 1 158637748 158637748 C T SPTA1 Silent p.E646E 0.11 TCGA-EE-A2MJ-06 1 158655074 158655074 C T SPTA1 Missense_Mutation p.E30K 0.09 tolerated(0.16) benign(0.045) TCGA-EE-A2MJ-06 1 158656312 158656312 C T SPTA1 5'UTR 0.11 TCGA-EE-A2MJ-06 1 158736211 158736211 C T OR6N1 Missense_Mutation p.E88K 0.20 tolerated(0.3) benign(0.005) TCGA-EE-A2MJ-06 1 158813785 158813785 G A MNDA Missense_Mutation p.R148K 0.10 tolerated(1) benign(0.006) TCGA-EE-A2MJ-06 1 15906600 15906600 C T AGMAT Silent p.A171A 0.17 TCGA-EE-A2MJ-06 1 159283796 159283796 G A OR10J3 Silent p.S218S 0.10 TCGA-EE-A2MJ-06 1 159504990 159504990 C T OR10J5 Missense_Mutation p.D270N 0.11 tolerated(0.05) possibly_damaging(0.85) TCGA-EE-A2MJ-06 1 159683245 159683245 C T CRP 3'UTR 0.16 TCGA-EE-A2MJ-06 1 159778040 159778040 G A FCRL6 Nonsense_Mutation p.W42* 0.28 TCGA-EE-A2MJ-06 1 159778082 159778082 G A FCRL6 Missense_Mutation p.G56E 0.13 tolerated(0.39) possibly_damaging(0.647) TCGA-EE-A2MJ-06 1 159901633 159901633 C T IGSF9 Missense_Mutation p.G444E 0.17 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MJ-06 1 159907562 159907562 C T IGSF9 Nonsense_Mutation p.W105* 0.11 TCGA-EE-A2MJ-06 1 160654855 160654855 C T CD48 Nonsense_Mutation p.W69* 0.24 TCGA-EE-A2MJ-06 1 160718154 160718154 C T SLAMF7 Missense_Mutation p.R76C 0.32 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MJ-06 1 160720138 160720138 C T SLAMF7 Silent p.L232L 0.08 TCGA-EE-A2MJ-06 1 160720183 160720183 C T SLAMF7 Missense_Mutation p.L247F 0.10 tolerated(0.47) benign(0.004) TCGA-EE-A2MJ-06 1 161476213 161476213 C T FCGR2A Missense_Mutation p.R66C 0.19 deleterious(0) benign(0.443) TCGA-EE-A2MJ-06 1 161514572 161514572 C T FCGR3A Missense_Mutation p.D202N 0.10 deleterious(0.03) possibly_damaging(0.753) TCGA-EE-A2MJ-06 1 161697270 161697270 C T FCRLB Silent p.L367L 0.10 TCGA-EE-A2MJ-06 1 16202812 16202812 C T SPEN Nonsense_Mutation p.R174* 0.15 TCGA-EE-A2MJ-06 1 163306561 163306561 T G NUF2 Missense_Mutation p.F120V 0.20 tolerated(0.11) probably_damaging(0.982) TCGA-EE-A2MJ-06 1 16373114 16373114 C T CLCNKB Missense_Mutation p.S105F 0.19 tolerated(0.05) probably_damaging(0.962) TCGA-EE-A2MJ-06 1 16459981 16459981 C T EPHA2 Missense_Mutation p.G620E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 165218696 165218696 C T LMX1A Missense_Mutation p.E149K 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MJ-06 1 165532895 165532895 G A LRRC52 Missense_Mutation p.G259E 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 166927185 166927185 C T ILDR2 Missense_Mutation p.G67E 0.11 tolerated(0.24) benign(0.043) TCGA-EE-A2MJ-06 1 166991040 166991040 C T MAEL Missense_Mutation p.S418L 0.22 deleterious_low_confidence(0.01) benign(0.11) TCGA-EE-A2MJ-06 1 167095239 167095239 G A DUSP27 Missense_Mutation p.G291R 0.13 deleterious(0.04) benign(0.054) TCGA-EE-A2MJ-06 1 167802296 167802296 G A ADCY10 Silent p.L1174L 0.07 TCGA-EE-A2MJ-06 1 168054872 168054872 C T GPR161 Missense_Mutation p.G516E 0.16 deleterious_low_confidence(0.02) probably_damaging(0.941) TCGA-EE-A2MJ-06 1 168698112 168698112 C T DPT Missense_Mutation p.E101K 0.21 tolerated(0.09) benign(0.306) TCGA-EE-A2MJ-06 1 169510306 169510306 G A F5 Missense_Mutation p.P1341L 0.26 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 169510946 169510946 G A F5 Nonsense_Mutation p.Q1128* 0.08 TCGA-EE-A2MJ-06 1 169599313 169599313 C T SELP 5'UTR 0.10 TCGA-EE-A2MJ-06 1 173155586 173155586 T A TNFSF4 3'UTR 0.30 TCGA-EE-A2MJ-06 1 173552678 173552678 G A SLC9C2 Missense_Mutation p.R203W 0.09 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MJ-06 1 175355315 175355315 C T TNR Missense_Mutation p.E544K 0.32 tolerated(0.1) possibly_damaging(0.665) TCGA-EE-A2MJ-06 1 176679217 176679217 G A PAPPA2 Missense_Mutation p.G1186R 0.09 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2MJ-06 1 176734809 176734809 C T PAPPA2 Missense_Mutation p.H1387Y 0.08 deleterious(0.04) benign(0.01) TCGA-EE-A2MJ-06 1 176758951 176758951 C T PAPPA2 Silent p.L1574L 0.50 TCGA-EE-A2MJ-06 1 176903371 176903371 C T ASTN1 Missense_Mutation p.G863D 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 177250216 177250216 G A BRINP2 Nonsense_Mutation p.W635* 0.08 TCGA-EE-A2MJ-06 1 179078078 179078078 G A ABL2 Missense_Mutation p.S775F 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-EE-A2MJ-06 1 179078467 179078467 G A ABL2 Silent p.T645T 0.11 TCGA-EE-A2MJ-06 1 179078468 179078468 G A ABL2 Missense_Mutation p.T645I 0.11 tolerated_low_confidence(0.06) benign(0.051) TCGA-EE-A2MJ-06 1 179561865 179561865 G A TDRD5 Missense_Mutation p.V39I 0.10 tolerated(0.59) benign(0.007) TCGA-EE-A2MJ-06 1 179620077 179620077 G A TDRD5 Missense_Mutation p.E626K 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MJ-06 1 179989791 179989791 C T CEP350 Missense_Mutation p.S961F 0.08 possibly_damaging(0.602) TCGA-EE-A2MJ-06 1 180945608 180945608 G A STX6 3'UTR 0.28 TCGA-EE-A2MJ-06 1 18152362 18152362 C T ACTL8 Missense_Mutation p.S150F 0.13 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 1 181686317 181686317 C T CACNA1E Silent p.S468S 0.12 TCGA-EE-A2MJ-06 1 182551267 182551267 G A RNASEL Missense_Mutation p.R565C 0.26 tolerated(0.17) benign(0.002) TCGA-EE-A2MJ-06 1 182615853 182615853 G A RGS8 3'UTR 0.26 TCGA-EE-A2MJ-06 1 182615854 182615854 A G RGS8 3'UTR 0.25 TCGA-EE-A2MJ-06 1 182617422 182617422 G A RGS8 Silent p.F88F 0.15 TCGA-EE-A2MJ-06 1 183212290 183212290 C T LAMC2 Missense_Mutation p.L1113F 0.10 deleterious(0.04) benign(0.014) TCGA-EE-A2MJ-06 1 183515121 183515121 C T SMG7 Silent p.S751S 0.09 TCGA-EE-A2MJ-06 1 183909851 183909851 C T COLGALT2 Missense_Mutation p.E490K 0.10 tolerated(0.62) benign(0.198) TCGA-EE-A2MJ-06 1 184787840 184787840 A G FAM129A Missense_Mutation p.F369L 0.25 tolerated(0.11) benign(0.279) TCGA-EE-A2MJ-06 1 185931710 185931710 C T HMCN1 Missense_Mutation p.S630F 0.12 probably_damaging(0.996) TCGA-EE-A2MJ-06 1 186099733 186099733 C T HMCN1 Silent p.T4378T 0.14 TCGA-EE-A2MJ-06 1 186099734 186099734 C T HMCN1 Missense_Mutation p.P4379S 0.14 probably_damaging(0.998) TCGA-EE-A2MJ-06 1 186278155 186278155 G A PRG4 Missense_Mutation p.G1102R 0.13 unknown(0) TCGA-EE-A2MJ-06 1 190067291 190067291 G A BRINP3 Missense_Mutation p.R720C 0.20 deleterious(0.01) possibly_damaging(0.549) TCGA-EE-A2MJ-06 1 190129977 190129977 G A BRINP3 Silent p.F335F 0.12 TCGA-EE-A2MJ-06 1 19181226 19181226 G A TAS1R2 Silent p.N246N 0.21 TCGA-EE-A2MJ-06 1 19204035 19204035 G A ALDH4A1 Missense_Mutation p.R338C 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 19430687 19430687 A G UBR4 Silent p.G4264G 0.17 TCGA-EE-A2MJ-06 1 19442124 19442124 G A UBR4 Missense_Mutation p.R3611C 0.17 probably_damaging(0.973) TCGA-EE-A2MJ-06 1 19611564 19611564 G A AKR7A3 Silent p.F184F 0.10 TCGA-EE-A2MJ-06 1 19644127 19644127 C T PQLC2 5'UTR 0.20 TCGA-EE-A2MJ-06 1 196648818 196648818 G A CFH Missense_Mutation p.E229K 0.22 tolerated(0.23) benign(0.115) TCGA-EE-A2MJ-06 1 196694341 196694341 C T CFH Missense_Mutation p.S596F 0.32 tolerated(0.1) benign(0.183) TCGA-EE-A2MJ-06 1 196695653 196695653 G A CFH Missense_Mutation p.E643K 0.24 tolerated(0.38) benign(0.033) TCGA-EE-A2MJ-06 1 196695721 196695721 G A CFH Missense_Mutation p.M665I 0.17 deleterious(0.02) benign(0.014) TCGA-EE-A2MJ-06 1 196715005 196715005 C T CFH Silent p.F1123F 0.08 TCGA-EE-A2MJ-06 1 196799639 196799639 G A CFHR1 Missense_Mutation p.G206E 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 196928040 196928040 G A CFHR2 Missense_Mutation p.E215K 0.12 tolerated(0.36) benign(0.011) TCGA-EE-A2MJ-06 1 197009662 197009662 G A F13B Missense_Mutation p.P648S 0.10 tolerated(0.19) benign(0.004) TCGA-EE-A2MJ-06 1 197072844 197072844 G A ASPM Missense_Mutation p.S1846F 0.15 tolerated(0.07) benign(0.193) TCGA-EE-A2MJ-06 1 197396979 197396979 G A CRB1 Missense_Mutation p.E842K 0.18 tolerated(0.35) benign(0.075) TCGA-EE-A2MJ-06 1 198685878 198685878 G A PTPRC Silent p.T453T 0.11 TCGA-EE-A2MJ-06 1 198701516 198701516 C T PTPRC Missense_Mutation p.P688S 0.10 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MJ-06 1 201008964 201008964 G A CACNA1S Silent p.L1873L 0.09 TCGA-EE-A2MJ-06 1 201012616 201012616 C T CACNA1S Missense_Mutation p.R1614K 0.11 tolerated(0.11) benign(0.194) TCGA-EE-A2MJ-06 1 201186547 201186547 G A IGFN1 Missense_Mutation p.G3243E 0.11 probably_damaging(1) TCGA-EE-A2MJ-06 1 201982372 201982372 C T ELF3 Nonsense_Mutation p.R251* 0.21 TCGA-EE-A2MJ-06 1 202287170 202287170 G A LGR6 Missense_Mutation p.G580E 0.30 tolerated(0.13) probably_damaging(0.924) TCGA-EE-A2MJ-06 1 202864694 202864694 G A KLHL12 Missense_Mutation p.P364L 0.31 deleterious(0) possibly_damaging(0.646) TCGA-EE-A2MJ-06 1 203194880 203194880 G A CHIT1 Silent p.F58F 0.14 TCGA-EE-A2MJ-06 1 204588781 204588781 G A LRRN2 Missense_Mutation p.H114Y 0.16 tolerated(0.1) benign(0.008) TCGA-EE-A2MJ-06 1 204924007 204924007 G A NFASC Missense_Mutation p.G155S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 204966327 204966327 G A NFASC Missense_Mutation p.G938S 0.17 tolerated(0.37) unknown(0) TCGA-EE-A2MJ-06 1 205272852 205272852 C T NUAK2 Missense_Mutation p.R538Q 0.08 deleterious(0.02) benign(0.372) TCGA-EE-A2MJ-06 1 206651605 206651605 C T IKBKE Silent p.I305I 0.12 TCGA-EE-A2MJ-06 1 206972280 206972280 C T IL19 Missense_Mutation p.S14F 0.35 deleterious_low_confidence(0.01) benign(0.032) TCGA-EE-A2MJ-06 1 207086368 207086368 T C FAIM3 Silent p.E131E 0.06 TCGA-EE-A2MJ-06 1 207644767 207644767 G A CR2 Splice_Site p.X498_splice 0.09 TCGA-EE-A2MJ-06 1 207644832 207644832 C T CR2 Missense_Mutation p.R520C 0.16 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MJ-06 1 209796444 209796444 G A LAMB3 Silent p.A813A 0.18 TCGA-EE-A2MJ-06 1 209961957 209961957 C T IRF6 Silent p.E404E 0.24 TCGA-EE-A2MJ-06 1 210948780 210948780 C T KCNH1 Silent p.R674R 0.11 TCGA-EE-A2MJ-06 1 211652404 211652404 C T RD3 Missense_Mutation p.E188K 0.13 deleterious(0.01) possibly_damaging(0.827) TCGA-EE-A2MJ-06 1 212115266 212115266 G A INTS7 Missense_Mutation p.S930F 0.21 tolerated(0.05) possibly_damaging(0.828) TCGA-EE-A2MJ-06 1 212148585 212148585 C T INTS7 Missense_Mutation p.E580K 0.16 tolerated(0.28) benign(0.149) TCGA-EE-A2MJ-06 1 21221991 21221991 G A EIF4G3 Missense_Mutation p.S618F 0.22 deleterious(0.01) benign(0.004) TCGA-EE-A2MJ-06 1 212798400 212798400 G A FAM71A Missense_Mutation p.D61N 0.29 deleterious(0) probably_damaging(0.919) TCGA-EE-A2MJ-06 1 212799775 212799775 C T FAM71A Missense_Mutation p.S519F 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 215847770 215847770 G A USH2A Missense_Mutation p.R4495C 0.09 benign(0.01) TCGA-EE-A2MJ-06 1 215848419 215848419 G A USH2A Silent p.P4278P 0.29 TCGA-EE-A2MJ-06 1 2160544 2160544 C T SKI Silent p.F113F 0.13 TCGA-EE-A2MJ-06 1 216073511 216073511 G A USH2A Silent p.L2500L 0.29 TCGA-EE-A2MJ-06 1 217947835 217947835 C T SPATA17 Missense_Mutation p.P227S 0.14 tolerated(0.19) benign(0.031) TCGA-EE-A2MJ-06 1 220089206 220089206 G A SLC30A10 Missense_Mutation p.T348I 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 220170331 220170331 G A EPRS Silent p.S845S 0.10 TCGA-EE-A2MJ-06 1 221057551 221057551 C T HLX Silent p.F324F 0.13 TCGA-EE-A2MJ-06 1 22188579 22188579 G A HSPG2 Silent p.F1590F 0.19 TCGA-EE-A2MJ-06 1 221913028 221913028 G A DUSP10 Missense_Mutation p.P20L 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 1 222713546 222713546 C T HHIPL2 Missense_Mutation p.R419K 0.09 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MJ-06 1 222838884 222838884 G A MIA3 Missense_Mutation p.G1883S 0.08 tolerated(0.08) benign(0.139) TCGA-EE-A2MJ-06 1 223177902 223177902 C T DISP1 Missense_Mutation p.H1055Y 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 223285526 223285526 G A TLR5 Missense_Mutation p.A283V 0.21 tolerated(0.2) benign(0.004) TCGA-EE-A2MJ-06 1 223465899 223465899 G A SUSD4 Silent p.A81A 0.33 TCGA-EE-A2MJ-06 1 226334326 226334326 G A ACBD3 Silent p.V524V 0.09 TCGA-EE-A2MJ-06 1 228334616 228334616 C T GUK1 Silent p.F97F 0.14 TCGA-EE-A2MJ-06 1 228434376 228434376 C T OBSCN Missense_Mutation p.S1394L 0.24 possibly_damaging(0.503) TCGA-EE-A2MJ-06 1 228444558 228444558 C T OBSCN Nonsense_Mutation p.Q1598* 0.11 TCGA-EE-A2MJ-06 1 229738452 229738452 C G TAF5L Missense_Mutation p.K154N 0.11 tolerated(0.4) benign(0.112) TCGA-EE-A2MJ-06 1 230914722 230914722 G A CAPN9 Missense_Mutation p.M319I 0.18 deleterious(0.04) probably_damaging(0.936) TCGA-EE-A2MJ-06 1 231906697 231906697 C T DISC1 Silent p.T505T 0.24 TCGA-EE-A2MJ-06 1 231906698 231906698 C T DISC1 Missense_Mutation p.P506S 0.24 tolerated(0.31) benign(0.047) TCGA-EE-A2MJ-06 1 2330920 2330920 C T RER1 Missense_Mutation p.P85S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 234454586 234454586 C T SLC35F3 Silent p.I348I 0.08 TCGA-EE-A2MJ-06 1 235840451 235840451 G A LYST Missense_Mutation p.P3660S 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MJ-06 1 235884159 235884159 T A LYST Missense_Mutation p.N3121I 0.14 deleterious(0) possibly_damaging(0.581) TCGA-EE-A2MJ-06 1 235950643 235950643 T C LYST Silent p.K1573K 0.18 TCGA-EE-A2MJ-06 1 236143940 236143940 T A NID1 Missense_Mutation p.T1081S 0.14 tolerated(0.07) possibly_damaging(0.618) TCGA-EE-A2MJ-06 1 236889272 236889272 G A ACTN2 Missense_Mutation p.R163K 0.07 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MJ-06 1 23694518 23694518 C T ZNF436 5'UTR 0.17 TCGA-EE-A2MJ-06 1 237982395 237982395 C T RYR2 Silent p.I4831I 0.09 TCGA-EE-A2MJ-06 1 240255934 240255934 C T FMN2 Silent p.T175T 0.11 TCGA-EE-A2MJ-06 1 241907818 241907818 G A WDR64 Missense_Mutation p.G522R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 242016659 242016659 G A EXO1 Splice_Site p.X94_splice 0.23 TCGA-EE-A2MJ-06 1 242161914 242161914 C T MAP1LC3C Silent p.V41V 0.14 TCGA-EE-A2MJ-06 1 24392449 24392449 G A MYOM3 Nonsense_Mutation p.Q1156* 0.15 TCGA-EE-A2MJ-06 1 24484345 24484345 G A IFNLR1 Nonsense_Mutation p.Q280* 0.11 TCGA-EE-A2MJ-06 1 244852572 244852572 C T DESI2 Missense_Mutation p.P46L 0.10 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MJ-06 1 245006428 245006428 G A COX20 Missense_Mutation p.G103S 0.26 tolerated(0.65) benign(0.016) TCGA-EE-A2MJ-06 1 245766051 245766051 C T KIF26B Missense_Mutation p.A508V 0.19 deleterious(0.01) unknown(0) TCGA-EE-A2MJ-06 1 247587588 247587588 C T NLRP3 Silent p.P281P 0.22 TCGA-EE-A2MJ-06 1 247695169 247695169 G A OR2C3 Silent p.I215I 0.36 TCGA-EE-A2MJ-06 1 247737610 247737610 C T GCSAML Missense_Mutation p.L112F 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 247751793 247751793 G A OR2G2 Silent p.G44G 0.07 TCGA-EE-A2MJ-06 1 247752051 247752051 C T OR2G2 Silent p.C130C 0.13 TCGA-EE-A2MJ-06 1 247752052 247752052 C T OR2G2 Missense_Mutation p.R131C 0.14 deleterious(0.01) benign(0.032) TCGA-EE-A2MJ-06 1 247836279 247836279 C T OR13G1 Missense_Mutation p.G22E 0.14 tolerated(0.32) benign(0.002) TCGA-EE-A2MJ-06 1 247902560 247902560 C T OR14K1 Missense_Mutation p.S215F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 248059536 248059536 C T OR2W3 Silent p.L216L 0.10 TCGA-EE-A2MJ-06 1 248112291 248112291 G A OR2L8 Missense_Mutation p.M44I 0.21 deleterious(0.03) benign(0.109) TCGA-EE-A2MJ-06 1 248201829 248201829 G A OR2L2 Missense_Mutation p.G87E 0.08 deleterious(0.02) benign(0.292) TCGA-EE-A2MJ-06 1 248224163 248224163 C T OR2L3 Silent p.F60F 0.06 TCGA-EE-A2MJ-06 1 248366744 248366744 C T OR2M3 Silent p.A125A 0.09 TCGA-EE-A2MJ-06 1 248436183 248436183 G A OR2T33 Nonsense_Mutation p.Q312* 0.08 TCGA-EE-A2MJ-06 1 248487068 248487068 G A OR2M7 Missense_Mutation p.P268L 0.11 deleterious(0.05) benign(0.163) TCGA-EE-A2MJ-06 1 248512664 248512664 G A OR14C36 Missense_Mutation p.M196I 0.09 tolerated(0.4) benign(0) TCGA-EE-A2MJ-06 1 248756259 248756259 C T OR2T10 Missense_Mutation p.D271N 0.23 deleterious(0.02) benign(0.314) TCGA-EE-A2MJ-06 1 24979433 24979433 C T SRRM1 Missense_Mutation p.P317L 0.13 unknown(0) TCGA-EE-A2MJ-06 1 28271853 28271853 C T SMPDL3B Missense_Mutation p.P58S 0.27 tolerated(0.11) benign(0.196) TCGA-EE-A2MJ-06 1 2938862 2938862 C T ACTRT2 Silent p.F204F 0.14 TCGA-EE-A2MJ-06 1 29581888 29581888 G A PTPRU Missense_Mutation p.G59S 0.18 tolerated(0.46) benign(0.018) TCGA-EE-A2MJ-06 1 29581889 29581889 G A PTPRU Missense_Mutation p.G59D 0.18 tolerated(0.25) benign(0.331) TCGA-EE-A2MJ-06 1 31467992 31467992 G A PUM1 Silent p.L266L 0.16 TCGA-EE-A2MJ-06 1 32259353 32259353 C T SPOCD1 Silent p.Q843Q 0.18 TCGA-EE-A2MJ-06 1 32280501 32280501 C T SPOCD1 Missense_Mutation p.R145K 0.11 tolerated(0.19) possibly_damaging(0.675) TCGA-EE-A2MJ-06 1 32745266 32745266 C T LCK Intron 0.15 TCGA-EE-A2MJ-06 1 32745267 32745267 C T LCK Intron 0.15 TCGA-EE-A2MJ-06 1 32800664 32800664 G A MARCKSL1 Missense_Mutation p.S41F 0.24 deleterious(0) possibly_damaging(0.588) TCGA-EE-A2MJ-06 1 33134686 33134686 C T RBBP4 Silent p.L238L 0.14 TCGA-EE-A2MJ-06 1 33562307 33562307 G A ADC Splice_Site p.X252_splice 0.23 TCGA-EE-A2MJ-06 1 33960692 33960692 C T ZSCAN20 Silent p.S916S 0.13 TCGA-EE-A2MJ-06 1 33987127 33987127 G A CSMD2 Silent p.A3367A 0.12 TCGA-EE-A2MJ-06 1 34035053 34035053 G A CSMD2 Silent p.S2686S 0.16 TCGA-EE-A2MJ-06 1 34166236 34166236 C T CSMD2 Missense_Mutation p.G1165E 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 1 34189802 34189802 C T CSMD2 Missense_Mutation p.G959D 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 34677907 34677907 C T C1orf94 Missense_Mutation p.P541S 0.22 tolerated(0.57) benign(0.093) TCGA-EE-A2MJ-06 1 34684324 34684324 C T C1orf94 Missense_Mutation p.P587S 0.19 deleterious(0.01) benign(0.417) TCGA-EE-A2MJ-06 1 35250940 35250940 G A GJB3 Missense_Mutation p.G193S 0.11 tolerated(0.22) probably_damaging(0.936) TCGA-EE-A2MJ-06 1 36054033 36054033 C T TFAP2E Missense_Mutation p.P222L 0.13 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A2MJ-06 1 3644768 3644768 C T TP73 Missense_Mutation p.T354M 0.18 tolerated(0.5) benign(0.008) TCGA-EE-A2MJ-06 1 3732052 3732052 G A CEP104 Missense_Mutation p.P898S 0.11 tolerated(0.41) benign(0.005) TCGA-EE-A2MJ-06 1 3753249 3753249 G A CEP104 Missense_Mutation p.S376F 0.21 tolerated(0.71) benign(0.003) TCGA-EE-A2MJ-06 1 38272926 38272926 G A C1orf122 5'Flank 0.29 TCGA-EE-A2MJ-06 1 38338742 38338742 G A INPP5B Silent p.L683L 0.20 TCGA-EE-A2MJ-06 1 38355352 38355352 G A INPP5B Missense_Mutation p.S225F 0.16 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MJ-06 1 39340183 39340183 T C GJA9 3'UTR 0.19 TCGA-EE-A2MJ-06 1 39384781 39384781 C T RHBDL2 Missense_Mutation p.G35E 0.09 tolerated(1) benign(0.001) TCGA-EE-A2MJ-06 1 39763387 39763387 C T MACF1 Silent p.S822S 0.24 TCGA-EE-A2MJ-06 1 39798726 39798726 C T MACF1 Intron 0.16 TCGA-EE-A2MJ-06 1 39812801 39812801 G A MACF1 Intron 0.19 TCGA-EE-A2MJ-06 1 39950307 39950307 C T MACF1 Missense_Mutation p.P5314L 0.09 benign(0.199) TCGA-EE-A2MJ-06 1 41013040 41013040 C T ZNF684 Missense_Mutation p.H349Y 0.21 deleterious(0) possibly_damaging(0.885) TCGA-EE-A2MJ-06 1 41300651 41300651 C T KCNQ4 Silent p.F542F 0.16 TCGA-EE-A2MJ-06 1 41300652 41300652 C T KCNQ4 Silent p.L543L 0.17 TCGA-EE-A2MJ-06 1 42049344 42049344 G A HIVEP3 Silent p.I375I 0.15 TCGA-EE-A2MJ-06 1 42050174 42050174 G A HIVEP3 Missense_Mutation p.P99S 0.16 probably_damaging(0.943) TCGA-EE-A2MJ-06 1 43162381 43162381 C T YBX1 Silent p.D141D 0.09 TCGA-EE-A2MJ-06 1 43777490 43777490 G A TIE1 Silent p.S494S 0.11 TCGA-EE-A2MJ-06 1 44069127 44069127 C T PTPRF Missense_Mutation p.S794F 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 1 44072522 44072522 T G PTPRF Missense_Mutation p.V1247G 0.10 tolerated(0.17) benign(0.045) TCGA-EE-A2MJ-06 1 44451237 44451237 C T B4GALT2 Silent p.G333G 0.13 TCGA-EE-A2MJ-06 1 44451238 44451238 C T B4GALT2 Missense_Mutation p.R334C 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 44595869 44595869 G A KLF17 Splice_Site p.X309_splice 0.08 TCGA-EE-A2MJ-06 1 45092050 45092050 C T RNF220 Missense_Mutation p.H296Y 0.08 tolerated(0.13) benign(0.295) TCGA-EE-A2MJ-06 1 45293110 45293110 G A PTCH2 Missense_Mutation p.R779C 0.12 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A2MJ-06 1 45293381 45293381 G A PTCH2 Silent p.I688I 0.17 TCGA-EE-A2MJ-06 1 45474336 45474336 G A HECTD3 Silent p.I370I 0.09 TCGA-EE-A2MJ-06 1 46290166 46290166 C T MAST2 Missense_Mutation p.S80L 0.18 deleterious_low_confidence(0.01) benign(0.067) TCGA-EE-A2MJ-06 1 47366085 47366085 C T CYP4Z2P RNA 0.30 TCGA-EE-A2MJ-06 1 47603272 47603272 C T CYP4A22 Silent p.L39L 0.21 TCGA-EE-A2MJ-06 1 47610048 47610048 G A CYP4A22 Silent p.R270R 0.22 TCGA-EE-A2MJ-06 1 47610589 47610589 G A CYP4A22 Missense_Mutation p.G390E 0.15 deleterious(0.03) possibly_damaging(0.47) TCGA-EE-A2MJ-06 1 50661331 50661331 G A ELAVL4 Missense_Mutation p.E220K 0.09 tolerated(0.08) benign(0.028) TCGA-EE-A2MJ-06 1 54060480 54060480 G A GLIS1 Silent p.A32A 0.12 TCGA-EE-A2MJ-06 1 54375721 54375721 G A DIO1 3'UTR 0.13 TCGA-EE-A2MJ-06 1 54610311 54610311 G A CDCP2 Silent p.F85F 0.27 TCGA-EE-A2MJ-06 1 55088965 55088965 G A FAM151A Missense_Mutation p.T35I 0.14 tolerated(0.15) benign(0.003) TCGA-EE-A2MJ-06 1 55224553 55224553 G A PARS2 Silent p.T94T 0.19 TCGA-EE-A2MJ-06 1 55521729 55521729 C T PCSK9 Missense_Mutation p.P288L 0.07 deleterious(0.02) possibly_damaging(0.743) TCGA-EE-A2MJ-06 1 55521730 55521730 C T PCSK9 Silent p.P288P 0.07 TCGA-EE-A2MJ-06 1 57202773 57202773 C T C1orf168 Missense_Mutation p.E594K 0.11 tolerated(0.14) benign(0.045) TCGA-EE-A2MJ-06 1 57347219 57347219 G A C8A Missense_Mutation p.R189Q 0.17 tolerated(0.25) benign(0.014) TCGA-EE-A2MJ-06 1 57417813 57417813 C T C8B Missense_Mutation p.D192N 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 1 57756703 57756703 C T DAB1 5'UTR 0.14 TCGA-EE-A2MJ-06 1 60538282 60538282 C T C1orf87 Missense_Mutation p.D12N 0.08 tolerated(0.21) benign(0.007) TCGA-EE-A2MJ-06 1 6214776 6214776 G A CHD5 Missense_Mutation p.P230L 0.10 tolerated_low_confidence(0.14) benign(0.008) TCGA-EE-A2MJ-06 1 6272814 6272814 G A RNF207 Intron 0.25 TCGA-EE-A2MJ-06 1 62739545 62739545 C T KANK4 Missense_Mutation p.D411N 0.12 deleterious(0.01) benign(0.19) TCGA-EE-A2MJ-06 1 64038177 64038177 T C EFCAB7 Missense_Mutation p.L627P 0.19 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MJ-06 1 65332753 65332753 G A JAK1 Silent p.S262S 0.20 TCGA-EE-A2MJ-06 1 6705993 6705993 G A DNAJC11 Silent p.I250I 0.19 TCGA-EE-A2MJ-06 1 68512782 68512782 G A DIRAS3 Silent p.L67L 0.11 TCGA-EE-A2MJ-06 1 68910347 68910347 G A RPE65 Missense_Mutation p.S121F 0.11 deleterious(0) possibly_damaging(0.819) TCGA-EE-A2MJ-06 1 70740419 70740419 G A ANKRD13C Missense_Mutation p.P460S 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 1 71532609 71532609 G A ZRANB2 Missense_Mutation p.S260F 0.08 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MJ-06 1 74492607 74492607 C T LRRIQ3 Missense_Mutation p.D589N 0.12 tolerated(0.13) benign(0.085) TCGA-EE-A2MJ-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.17 tolerated(0.27) benign(0.035) TCGA-EE-A2MJ-06 1 74648365 74648365 G A LRRIQ3 Missense_Mutation p.L144F 0.10 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2MJ-06 1 75038412 75038412 C T C1orf173 Silent p.L994L 0.20 TCGA-EE-A2MJ-06 1 77510236 77510236 G A ST6GALNAC5 Missense_Mutation p.M203I 0.20 benign(0.005) TCGA-EE-A2MJ-06 1 79002142 79002142 G A PTGFR Missense_Mutation p.E284K 0.16 tolerated(0.6) benign(0.01) TCGA-EE-A2MJ-06 1 82408790 82408790 C T LPHN2 Missense_Mutation p.R179C 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MJ-06 1 82408945 82408945 G A LPHN2 Silent p.V230V 0.15 TCGA-EE-A2MJ-06 1 82431755 82431755 C T LPHN2 Silent p.A660A 0.09 TCGA-EE-A2MJ-06 1 85405368 85405368 G A MCOLN2 Silent p.F326F 0.08 TCGA-EE-A2MJ-06 1 87045120 87045120 G A CLCA4 Missense_Mutation p.G736R 0.21 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 1 8922989 8922989 G A ENO1 Missense_Mutation p.P398S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-EE-A2MJ-06 1 89528828 89528828 G A GBP1 Silent p.I30I 0.18 TCGA-EE-A2MJ-06 1 89845982 89845982 G A GBP6 Silent p.R221R 0.24 TCGA-EE-A2MJ-06 1 9034706 9034706 G A CA6 3'Flank 0.23 TCGA-EE-A2MJ-06 1 91727940 91727940 G A HFM1 Nonsense_Mutation p.Q1366* 0.12 TCGA-EE-A2MJ-06 1 93101794 93101794 T G EVI5 Missense_Mutation p.K482Q 0.07 deleterious(0.04) benign(0.272) TCGA-EE-A2MJ-06 1 94476400 94476400 G A ABCA4 Silent p.F1890F 0.11 TCGA-EE-A2MJ-06 1 94476401 94476401 A C ABCA4 Missense_Mutation p.F1890C 0.11 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 1 94685905 94685905 G A ARHGAP29 Silent p.L83L 0.22 TCGA-EE-A2MJ-06 1 9661392 9661392 C T TMEM201 Missense_Mutation p.P279L 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 1 97544576 97544576 C T DPYD Missense_Mutation p.E1012K 0.15 tolerated(0.8) benign(0) TCGA-EE-A2MJ-06 1 981167 981167 G T AGRN Missense_Mutation p.G864V 0.14 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MJ-06 1 983033 983033 C T AGRN Silent p.S1199S 0.11 TCGA-EE-A2MJ-06 20 10394146 10394146 G A MKKS Missense_Mutation p.A6V 0.13 tolerated(0.1) benign(0.313) TCGA-EE-A2MJ-06 20 14306803 14306803 T C FLRT3 Silent p.G450G 0.09 TCGA-EE-A2MJ-06 20 1559323 1559323 C T RP4-576H24.4 Missense_Mutation p.E31K 0.18 deleterious(0.02) benign(0.403) TCGA-EE-A2MJ-06 20 17716333 17716333 C T BANF2 Silent p.F57F 0.15 TCGA-EE-A2MJ-06 20 19665767 19665767 G A SLC24A3 Silent p.R362R 0.16 TCGA-EE-A2MJ-06 20 20033086 20033086 G A CRNKL1 Silent p.S128S 0.14 TCGA-EE-A2MJ-06 20 23065369 23065369 T C CD93 Silent p.G487G 0.15 TCGA-EE-A2MJ-06 20 2308780 2308780 G A TGM3 Missense_Mutation p.G368S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 20 2308781 2308781 G A TGM3 Missense_Mutation p.G368D 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 20 23669436 23669436 C T CST4 Silent p.K57K 0.17 TCGA-EE-A2MJ-06 20 2397950 2397950 G A TGM6 Missense_Mutation p.R470K 0.22 tolerated(0.28) benign(0.003) TCGA-EE-A2MJ-06 20 24565552 24565552 C T SYNDIG1 Missense_Mutation p.H181Y 0.11 tolerated(0.22) probably_damaging(0.999) TCGA-EE-A2MJ-06 20 25257899 25257899 C T PYGB Silent p.I264I 0.13 TCGA-EE-A2MJ-06 20 29966185 29966185 C T DEFB118 3'Flank 0.12 TCGA-EE-A2MJ-06 20 30126064 30126064 G A HM13 Missense_Mutation p.S122N 0.16 deleterious(0.05) benign(0.205) TCGA-EE-A2MJ-06 20 30347932 30347932 C T TPX2 Missense_Mutation p.P60L 0.29 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A2MJ-06 20 30584828 30584828 C T XKR7 Silent p.Y436Y 0.11 TCGA-EE-A2MJ-06 20 32005578 32005578 G A SNTA1 Silent p.S216S 0.10 TCGA-EE-A2MJ-06 20 32268192 32268192 G A E2F1 Missense_Mutation p.H98Y 0.14 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MJ-06 20 3278795 3278795 G A C20orf194 Missense_Mutation p.L604F 0.10 tolerated(0.62) benign(0.007) TCGA-EE-A2MJ-06 20 33364247 33364247 G A NCOA6 Silent p.S80S 0.24 TCGA-EE-A2MJ-06 20 33999785 33999785 C T UQCC1 5'UTR 0.24 TCGA-EE-A2MJ-06 20 34095871 34095871 G A CEP250 Missense_Mutation p.G2253E 0.19 benign(0.019) TCGA-EE-A2MJ-06 20 35547860 35547860 G A SAMHD1 Silent p.V253V 0.11 TCGA-EE-A2MJ-06 20 36631066 36631066 G A TTI1 Silent p.H872H 0.17 TCGA-EE-A2MJ-06 20 36641063 36641063 G A TTI1 Missense_Mutation p.P386S 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 20 36997702 36997702 C T LBP Silent p.L349L 0.23 TCGA-EE-A2MJ-06 20 37053978 37053978 G A SNORA71B RNA 0.15 TCGA-EE-A2MJ-06 20 3728884 3728884 G A HSPA12B Silent p.E232E 0.25 TCGA-EE-A2MJ-06 20 40118549 40118549 G A CHD6 Missense_Mutation p.P517S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 20 42161479 42161479 C T L3MBTL1 Missense_Mutation p.L429F 0.16 tolerated(0.2) probably_damaging(0.995) TCGA-EE-A2MJ-06 20 42635225 42635225 G A TOX2 Silent p.E68E 0.21 TCGA-EE-A2MJ-06 20 43043164 43043164 C T HNF4A Silent p.S170S 0.13 TCGA-EE-A2MJ-06 20 43058356 43058356 G A HNF4A 3'UTR 0.12 TCGA-EE-A2MJ-06 20 44180689 44180689 C T WFDC8 Silent p.L234L 0.08 TCGA-EE-A2MJ-06 20 44444315 44444315 C T UBE2C Silent p.L118L 0.09 TCGA-EE-A2MJ-06 20 44637642 44637642 C T MMP9 Missense_Mutation p.S26F 0.18 deleterious(0.01) benign(0.278) TCGA-EE-A2MJ-06 20 45354085 45354085 C T SLC2A10 Missense_Mutation p.S137F 0.10 deleterious(0) probably_damaging(0.912) TCGA-EE-A2MJ-06 20 46294001 46294001 C T SULF2 Missense_Mutation p.E647K 0.07 tolerated(0.07) possibly_damaging(0.882) TCGA-EE-A2MJ-06 20 47274764 47274764 G A PREX1 Silent p.I628I 0.09 TCGA-EE-A2MJ-06 20 47688928 47688928 C T CSE1L Missense_Mutation p.R292C 0.11 deleterious(0.05) possibly_damaging(0.697) TCGA-EE-A2MJ-06 20 47886753 47886753 G A ZNFX1 Silent p.F532F 0.15 TCGA-EE-A2MJ-06 20 47990438 47990438 C T KCNB1 Silent p.Q553Q 0.09 TCGA-EE-A2MJ-06 20 47990999 47990999 G A KCNB1 Silent p.A366A 0.08 TCGA-EE-A2MJ-06 20 47991332 47991332 C T KCNB1 Nonsense_Mutation p.W255* 0.15 TCGA-EE-A2MJ-06 20 48130782 48130782 C T PTGIS Missense_Mutation p.D336N 0.09 tolerated(0.4) benign(0.032) TCGA-EE-A2MJ-06 20 50305663 50305663 G A ATP9A Missense_Mutation p.P247S 0.24 tolerated(0.29) benign(0.003) TCGA-EE-A2MJ-06 20 50418921 50418921 G A SALL4 Silent p.P9P 0.09 TCGA-EE-A2MJ-06 20 51870774 51870774 G A TSHZ2 Silent p.R259R 0.16 TCGA-EE-A2MJ-06 20 51871503 51871503 G A TSHZ2 Silent p.R502R 0.13 TCGA-EE-A2MJ-06 20 52774093 52774093 C T CYP24A1 Missense_Mutation p.G423E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 20 5282926 5282926 G A PROKR2 Silent p.F305F 0.16 TCGA-EE-A2MJ-06 20 53171574 53171574 C T DOK5 Missense_Mutation p.H57Y 0.26 tolerated(0.68) possibly_damaging(0.733) TCGA-EE-A2MJ-06 20 54824538 54824538 T G MC3R Missense_Mutation p.F213L 0.09 tolerated(1) benign(0.123) TCGA-EE-A2MJ-06 20 55033445 55033445 G A CASS4 Missense_Mutation p.R668K 0.11 tolerated(1) benign(0.004) TCGA-EE-A2MJ-06 20 56137864 56137864 G A PCK1 Missense_Mutation p.M173I 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 20 56139563 56139563 G A PCK1 Silent p.S404S 0.19 TCGA-EE-A2MJ-06 20 57474005 57474005 A T GNAS Missense_Mutation p.E717D 0.16 deleterious(0.01) possibly_damaging(0.67) TCGA-EE-A2MJ-06 20 58567522 58567522 C T CDH26 Missense_Mutation p.S458F 0.18 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MJ-06 20 60504876 60504876 C T CDH4 Missense_Mutation p.L739F 0.14 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MJ-06 20 60582625 60582625 G A TAF4 Missense_Mutation p.P651L 0.09 probably_damaging(0.962) TCGA-EE-A2MJ-06 20 6069691 6069691 G A FERMT1 Silent p.I395I 0.15 TCGA-EE-A2MJ-06 20 6093246 6093246 G A FERMT1 Missense_Mutation p.S137F 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 20 61143439 61143439 A C C20orf166 5'Flank 0.08 TCGA-EE-A2MJ-06 20 61528327 61528327 G A DIDO1 Missense_Mutation p.S537F 0.12 benign(0.074) TCGA-EE-A2MJ-06 20 61957467 61957467 G A COL20A1 Missense_Mutation p.G1141E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 20 62595509 62595509 G A ZNF512B Silent p.G465G 0.09 TCGA-EE-A2MJ-06 20 744543 744543 G A SLC52A3 Silent p.F224F 0.17 TCGA-EE-A2MJ-06 20 8698442 8698442 C T PLCB1 Missense_Mutation p.S487F 0.21 deleterious(0.01) benign(0.257) TCGA-EE-A2MJ-06 20 8862357 8862357 G A PLCB1 Missense_Mutation p.G1171E 0.09 deleterious(0.04) possibly_damaging(0.674) TCGA-EE-A2MJ-06 20 896686 896686 C T ANGPT4 Missense_Mutation p.G58R 0.20 tolerated(0.48) benign(0.115) TCGA-EE-A2MJ-06 20 896687 896687 C T ANGPT4 Silent p.P57P 0.19 TCGA-EE-A2MJ-06 20 9417787 9417787 G A PLCB4 Missense_Mutation p.E906K 0.26 tolerated(0.53) benign(0.006) TCGA-EE-A2MJ-06 21 10920131 10920131 C T TPTE Missense_Mutation p.D375N 0.09 deleterious(0.02) possibly_damaging(0.451) TCGA-EE-A2MJ-06 21 10951266 10951266 C T TPTE Missense_Mutation p.R149K 0.09 deleterious(0.04) benign(0.181) TCGA-EE-A2MJ-06 21 10970043 10970043 T A TPTE Nonsense_Mutation p.K29* 0.07 TCGA-EE-A2MJ-06 21 15524928 15524928 G A LIPI Nonsense_Mutation p.Q383* 0.12 TCGA-EE-A2MJ-06 21 18966470 18966470 G A BTG3 Missense_Mutation p.P278S 0.15 tolerated(0.54) benign(0.19) TCGA-EE-A2MJ-06 21 19629030 19629030 C T CHODL Missense_Mutation p.S95F 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A2MJ-06 21 27071133 27071133 G A JAM2 Missense_Mutation p.R180K 0.13 tolerated(0.66) benign(0.002) TCGA-EE-A2MJ-06 21 27945287 27945287 G A CYYR1 5'UTR 0.22 TCGA-EE-A2MJ-06 21 30698863 30698863 C T BACH1 Missense_Mutation p.R240C 0.19 tolerated(0.2) possibly_damaging(0.72) TCGA-EE-A2MJ-06 21 31798068 31798068 C T KRTAP13-3 Missense_Mutation p.G55S 0.10 tolerated(0.06) possibly_damaging(0.718) TCGA-EE-A2MJ-06 21 31812806 31812806 C T KRTAP15-1 Missense_Mutation p.T54I 0.09 tolerated(0.09) possibly_damaging(0.69) TCGA-EE-A2MJ-06 21 31874269 31874269 C T KRTAP19-5 Missense_Mutation p.G47D 0.09 tolerated_low_confidence(0.62) unknown(0) TCGA-EE-A2MJ-06 21 33032183 33032183 G A SOD1 Intron 0.34 TCGA-EE-A2MJ-06 21 33954539 33954539 G A AP000275.65 Missense_Mutation p.P285S 0.08 benign(0) TCGA-EE-A2MJ-06 21 34889714 34889714 G A GART Missense_Mutation p.S635F 0.11 deleterious(0.01) benign(0.063) TCGA-EE-A2MJ-06 21 37605195 37605195 C T DOPEY2 Missense_Mutation p.S815F 0.12 tolerated(0.06) benign(0.016) TCGA-EE-A2MJ-06 21 37605196 37605196 C T DOPEY2 Silent p.S815S 0.12 TCGA-EE-A2MJ-06 21 37717257 37717257 T C MORC3 Silent p.D311D 0.12 TCGA-EE-A2MJ-06 21 39755711 39755711 C T ERG Missense_Mutation p.G359R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 21 41300986 41300986 C T PCP4 Nonsense_Mutation p.Q47* 0.17 TCGA-EE-A2MJ-06 21 43161260 43161260 G A RIPK4 Missense_Mutation p.A698V 0.20 tolerated(0.08) benign(0.069) TCGA-EE-A2MJ-06 21 43504230 43504230 G A UMODL1 Missense_Mutation p.G119E 0.11 deleterious(0) possibly_damaging(0.731) TCGA-EE-A2MJ-06 21 43838637 43838637 C T UBASH3A Missense_Mutation p.S322L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 21 43867233 43867233 C T UBASH3A Missense_Mutation p.P639S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 21 44441540 44441540 G A PKNOX1 Missense_Mutation p.G283E 0.15 tolerated(0.12) probably_damaging(0.955) TCGA-EE-A2MJ-06 21 44837515 44837515 G A SIK1 Silent p.F628F 0.27 TCGA-EE-A2MJ-06 21 45786781 45786781 T A TRPM2 Missense_Mutation p.F190I 0.12 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MJ-06 21 45810858 45810858 C T TRPM2 Missense_Mutation p.R464C 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 21 45833940 45833940 C T TRPM2 Silent p.L1043L 0.08 TCGA-EE-A2MJ-06 21 46032776 46032776 G C KRTAP10-8 Silent p.A253A 0.19 TCGA-EE-A2MJ-06 21 46074299 46074299 G A KRTAP12-4 Missense_Mutation p.P78L 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-EE-A2MJ-06 21 46624512 46624512 C T ADARB1 Silent p.F576F 0.29 TCGA-EE-A2MJ-06 22 17280726 17280726 G A XKR3 Missense_Mutation p.S175F 0.27 deleterious(0) probably_damaging(0.951) TCGA-EE-A2MJ-06 22 18066228 18066228 G A SLC25A18 Missense_Mutation p.G113R 0.10 deleterious(0) probably_damaging(0.941) TCGA-EE-A2MJ-06 22 18844973 18844973 G A BCRP7 Intron 0.18 TCGA-EE-A2MJ-06 22 19197869 19197869 G A CLTCL1 Silent p.F1072F 0.21 TCGA-EE-A2MJ-06 22 19707342 19707342 G A SEPT5 Silent p.L55L 0.13 TCGA-EE-A2MJ-06 22 20783888 20783888 G A SCARF2 Silent p.L453L 0.16 TCGA-EE-A2MJ-06 22 21322194 21322194 C T AIFM3 5'UTR 0.11 TCGA-EE-A2MJ-06 22 21340177 21340177 C T LZTR1 Missense_Mutation p.S104F 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 22 21340178 21340178 C T LZTR1 Silent p.S104S 0.34 TCGA-EE-A2MJ-06 22 22681955 22681955 C T IGLV1-50 Missense_Mutation p.S46F 0.34 deleterious_low_confidence(0) benign(0.119) TCGA-EE-A2MJ-06 22 23011004 23011004 C G IGLV3-27 Missense_Mutation p.L23V 0.08 tolerated(0.1) benign(0.411) TCGA-EE-A2MJ-06 22 23090297 23090297 G A IGLV3-16 Missense_Mutation p.R79Q 0.21 deleterious(0.03) possibly_damaging(0.533) TCGA-EE-A2MJ-06 22 23523650 23523650 C T BCR Missense_Mutation p.P168L 0.34 tolerated_low_confidence(0.23) benign(0.015) TCGA-EE-A2MJ-06 22 24323179 24323179 G A GSTT2 Silent p.L51L 0.28 TCGA-EE-A2MJ-06 22 24451467 24451467 C T CABIN1 Missense_Mutation p.S313F 0.11 deleterious(0.01) possibly_damaging(0.526) TCGA-EE-A2MJ-06 22 24451468 24451468 C T CABIN1 Silent p.S313S 0.12 TCGA-EE-A2MJ-06 22 24836822 24836822 C T ADORA2A Silent p.L202L 0.08 TCGA-EE-A2MJ-06 22 26423114 26423114 G A MYO18B Missense_Mutation p.D2392N 0.10 deleterious(0.01) possibly_damaging(0.798) TCGA-EE-A2MJ-06 22 26706643 26706643 G A SEZ6L Missense_Mutation p.V508I 0.11 tolerated(0.81) benign(0.047) TCGA-EE-A2MJ-06 22 26902376 26902376 G A TFIP11 Missense_Mutation p.S138F 0.16 tolerated(0.08) benign(0.026) TCGA-EE-A2MJ-06 22 29533538 29533538 C T KREMEN1 Silent p.V280V 0.33 TCGA-EE-A2MJ-06 22 29684598 29684598 C T EWSR1 Missense_Mutation p.S272L 0.10 deleterious(0.04) unknown(0) TCGA-EE-A2MJ-06 22 29837868 29837868 C T RFPL1 Silent p.F237F 0.22 TCGA-EE-A2MJ-06 22 29838060 29838060 G A RFPL1 Silent p.V301V 0.09 TCGA-EE-A2MJ-06 22 30866041 30866041 C T SEC14L3 Missense_Mutation p.D67N 0.13 tolerated(0.16) benign(0.043) TCGA-EE-A2MJ-06 22 30950957 30950957 C T GAL3ST1 Missense_Mutation p.D419N 0.23 tolerated(0.07) benign(0.082) TCGA-EE-A2MJ-06 22 31091213 31091213 C T OSBP2 Missense_Mutation p.P106L 0.20 tolerated_low_confidence(0.23) benign(0.001) TCGA-EE-A2MJ-06 22 32017037 32017037 G A PISD Silent p.Y229Y 0.13 TCGA-EE-A2MJ-06 22 32218690 32218690 C T DEPDC5 Missense_Mutation p.S673F 0.10 tolerated(0.07) benign(0.035) TCGA-EE-A2MJ-06 22 35948085 35948085 G A RASD2 3'UTR 0.12 TCGA-EE-A2MJ-06 22 36055545 36055545 G A APOL6 Missense_Mutation p.E312K 0.20 tolerated(0.18) benign(0.003) TCGA-EE-A2MJ-06 22 36710238 36710238 G A MYH9 Silent p.I502I 0.14 TCGA-EE-A2MJ-06 22 37271913 37271913 C T NCF4 Silent p.L282L 0.10 TCGA-EE-A2MJ-06 22 37397952 37397952 C T TEX33 Missense_Mutation p.G139S 0.18 tolerated(0.9) probably_damaging(0.931) TCGA-EE-A2MJ-06 22 37499389 37499389 C T TMPRSS6 Silent p.E32E 0.10 TCGA-EE-A2MJ-06 22 38119807 38119807 C T TRIOBP Missense_Mutation p.S415F 0.14 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-EE-A2MJ-06 22 38120449 38120449 C T TRIOBP Missense_Mutation p.A629V 0.18 tolerated_low_confidence(0.19) benign(0.007) TCGA-EE-A2MJ-06 22 38483257 38483257 G A BAIAP2L2 Missense_Mutation p.P378L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 22 39770347 39770347 C T SYNGR1 Silent p.S42S 0.17 TCGA-EE-A2MJ-06 22 39917503 39917503 C T ATF4 Missense_Mutation p.S18F 0.18 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2MJ-06 22 42120046 42120046 G A MEI1 Missense_Mutation p.G278E 0.16 tolerated(0.17) benign(0.002) TCGA-EE-A2MJ-06 22 42263110 42263110 C T SREBF2 Missense_Mutation p.P122S 0.19 tolerated(0.09) benign(0.001) TCGA-EE-A2MJ-06 22 43280453 43280453 G A PACSIN2 Missense_Mutation p.R242C 0.33 tolerated(0.09) benign(0.006) TCGA-EE-A2MJ-06 22 44276713 44276713 G A PNPLA5 Missense_Mutation p.P418S 0.20 deleterious_low_confidence(0.02) benign(0.017) TCGA-EE-A2MJ-06 22 44585031 44585031 C T PARVG Silent p.I95I 0.12 TCGA-EE-A2MJ-06 22 46765661 46765661 G A CELSR1 Silent p.P2600P 0.08 TCGA-EE-A2MJ-06 22 50750572 50750572 G A DENND6B Missense_Mutation p.P585L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 22 50750573 50750573 G A DENND6B Missense_Mutation p.P585S 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 22 50754507 50754507 G A DENND6B Missense_Mutation p.P217S 0.14 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MJ-06 22 51160692 51160692 C T SHANK3 Silent p.P1493P 0.17 TCGA-EE-A2MJ-06 2 102441817 102441817 G A MAP4K4 Missense_Mutation p.D115N 0.17 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MJ-06 2 102626047 102626047 C T IL1R2 Missense_Mutation p.R31C 0.09 deleterious(0.04) possibly_damaging(0.824) TCGA-EE-A2MJ-06 2 102638677 102638677 C T IL1R2 Silent p.I239I 0.10 TCGA-EE-A2MJ-06 2 102956711 102956711 A C IL1RL1 Silent p.T142T 0.17 TCGA-EE-A2MJ-06 2 102959823 102959823 G A IL1RL1 Silent p.L306L 0.11 TCGA-EE-A2MJ-06 2 105924319 105924319 G A TGFBRAP1 Missense_Mutation p.T147I 0.08 deleterious(0.02) possibly_damaging(0.716) TCGA-EE-A2MJ-06 2 107041458 107041458 T C RGPD3 Missense_Mutation p.K989E 0.05 deleterious(0.02) benign(0.306) TCGA-EE-A2MJ-06 2 107041599 107041599 C T RGPD3 Missense_Mutation p.E942K 0.18 tolerated(0.25) benign(0.018) TCGA-EE-A2MJ-06 2 108626859 108626859 G A SLC5A7 Missense_Mutation p.G429R 0.14 tolerated(0.49) benign(0.066) TCGA-EE-A2MJ-06 2 108917375 108917375 G A SULT1C2 Nonsense_Mutation p.W131* 0.16 TCGA-EE-A2MJ-06 2 11053632 11053632 C T KCNF1 Silent p.S360S 0.12 TCGA-EE-A2MJ-06 2 113951444 113951444 G A PSD4 Silent p.G700G 0.12 TCGA-EE-A2MJ-06 2 118766131 118766131 G A CCDC93 Missense_Mutation p.P49L 0.13 deleterious(0) possibly_damaging(0.716) TCGA-EE-A2MJ-06 2 11964923 11964923 C T LPIN1 3'UTR 0.14 TCGA-EE-A2MJ-06 2 124783231 124783231 G A CNTNAP5 Missense_Mutation p.D2N 0.08 tolerated_low_confidence(0.2) benign(0.006) TCGA-EE-A2MJ-06 2 130869621 130869621 C T POTEF Silent p.V288V 0.17 TCGA-EE-A2MJ-06 2 131520094 131520094 G A AMER3 Missense_Mutation p.R150K 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 2 131520837 131520837 G A AMER3 Missense_Mutation p.D398N 0.16 tolerated(0.05) probably_damaging(0.975) TCGA-EE-A2MJ-06 2 131812892 131812892 C T FAM168B Missense_Mutation p.G143E 0.10 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-EE-A2MJ-06 2 133174903 133174903 G A GPR39 Nonsense_Mutation p.W96* 0.09 TCGA-EE-A2MJ-06 2 135625141 135625141 C T ACMSD Intron 0.11 TCGA-EE-A2MJ-06 2 137814260 137814260 G A THSD7B Missense_Mutation p.G137E 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MJ-06 2 137814413 137814413 G A THSD7B Nonsense_Mutation p.W188* 0.11 TCGA-EE-A2MJ-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.24 TCGA-EE-A2MJ-06 2 1488624 1488624 G A TPO Missense_Mutation p.G532E 0.12 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 2 149542258 149542258 C T EPC2 Missense_Mutation p.S680F 0.13 tolerated(0.72) possibly_damaging(0.828) TCGA-EE-A2MJ-06 2 152484210 152484210 T A NEB Nonsense_Mutation p.K3324* 0.13 TCGA-EE-A2MJ-06 2 153512913 153512913 C T PRPF40A Splice_Site p.X901_splice 0.19 TCGA-EE-A2MJ-06 2 160721408 160721408 C T LY75-CD302 Missense_Mutation p.G714D 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 2 163124040 163124040 C T IFIH1 Silent p.K949K 0.11 TCGA-EE-A2MJ-06 2 163241236 163241236 C T KCNH7 Missense_Mutation p.G975E 0.11 tolerated(0.41) benign(0) TCGA-EE-A2MJ-06 2 167056193 167056193 G A SCN9A Silent p.F1641F 0.11 TCGA-EE-A2MJ-06 2 168107274 168107274 C T XIRP2 Silent p.I3124I 0.14 TCGA-EE-A2MJ-06 2 169684963 169684963 A G NOSTRIN Missense_Mutation p.I98M 0.11 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2MJ-06 2 169874613 169874613 C T ABCB11 Missense_Mutation p.R8Q 0.10 tolerated_low_confidence(0.14) benign(0.006) TCGA-EE-A2MJ-06 2 170044544 170044544 G A LRP2 Silent p.I3088I 0.16 TCGA-EE-A2MJ-06 2 170058237 170058237 C T LRP2 Missense_Mutation p.E2785K 0.08 probably_damaging(0.997) TCGA-EE-A2MJ-06 2 170115567 170115567 G A LRP2 Silent p.N827N 0.20 TCGA-EE-A2MJ-06 2 170136033 170136033 G A LRP2 Silent p.L472L 0.16 TCGA-EE-A2MJ-06 2 170806490 170806490 G A UBR3 Missense_Mutation p.E1154K 0.09 tolerated(0.15) benign(0.079) TCGA-EE-A2MJ-06 2 173451030 173451030 C T PDK1 Missense_Mutation p.P324S 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MJ-06 2 176043862 176043862 A C ATP5G3 Silent p.G79G 0.10 TCGA-EE-A2MJ-06 2 179408644 179408644 T A TTN Missense_Mutation p.N32076I 0.22 TCGA-EE-A2MJ-06 2 179431214 179431214 C T TTN Missense_Mutation p.E26549K 0.23 TCGA-EE-A2MJ-06 2 179474925 179474925 C T TTN Missense_Mutation p.D17110N 0.08 TCGA-EE-A2MJ-06 2 179528012 179528012 C T TTN Silent p.P12227P 0.11 TCGA-EE-A2MJ-06 2 179544115 179544115 C T TTN Silent p.E11231E 0.14 TCGA-EE-A2MJ-06 2 179569978 179569978 C T TTN Missense_Mutation p.G9843R 0.19 TCGA-EE-A2MJ-06 2 179584942 179584942 C T TTN Silent p.G7809G 0.09 TCGA-EE-A2MJ-06 2 179585867 179585867 G A TTN Nonsense_Mutation p.Q7627* 0.31 TCGA-EE-A2MJ-06 2 179594268 179594268 C T TTN Silent p.L6205L 0.14 TCGA-EE-A2MJ-06 2 179594516 179594516 G A TTN Missense_Mutation p.S6155F 0.13 TCGA-EE-A2MJ-06 2 179604990 179604990 C T TTN Missense_Mutation p.E4324K 0.09 TCGA-EE-A2MJ-06 2 179605694 179605694 T G TTN Missense_Mutation p.N4089T 0.12 TCGA-EE-A2MJ-06 2 179606133 179606133 C T TTN Missense_Mutation p.E3943K 0.12 TCGA-EE-A2MJ-06 2 179610943 179610943 G A TTN Intron 0.26 TCGA-EE-A2MJ-06 2 179613744 179613744 G A TTN Intron 0.19 TCGA-EE-A2MJ-06 2 179640441 179640441 C T TTN Silent p.K2050K 0.16 TCGA-EE-A2MJ-06 2 179640842 179640842 G A TTN Missense_Mutation p.P1917S 0.15 TCGA-EE-A2MJ-06 2 179658217 179658217 C T TTN Missense_Mutation p.D484N 0.31 TCGA-EE-A2MJ-06 2 180309666 180309666 C T ZNF385B Silent p.G378G 0.20 TCGA-EE-A2MJ-06 2 18113837 18113837 C T KCNS3 3'UTR 0.24 TCGA-EE-A2MJ-06 2 182339977 182339977 G A ITGA4 Missense_Mutation p.R173Q 0.11 tolerated(0.65) benign(0.179) TCGA-EE-A2MJ-06 2 182399546 182399546 C T ITGA4 Silent p.L963L 0.16 TCGA-EE-A2MJ-06 2 182400338 182400338 G A ITGA4 3'UTR 0.28 TCGA-EE-A2MJ-06 2 182543404 182543404 C T NEUROD1 Missense_Mutation p.E62K 0.25 tolerated(0.09) benign(0.008) TCGA-EE-A2MJ-06 2 183601062 183601062 T C DNAJC10 Silent p.A312A 0.16 TCGA-EE-A2MJ-06 2 185800528 185800528 C T ZNF804A Silent p.P135P 0.11 TCGA-EE-A2MJ-06 2 188332622 188332622 G C TFPI Missense_Mutation p.D222E 0.13 tolerated(0.09) possibly_damaging(0.533) TCGA-EE-A2MJ-06 2 192012813 192012813 T A STAT4 Missense_Mutation p.E39D 0.16 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MJ-06 2 192252042 192252042 C T MYO1B Silent p.L549L 0.09 TCGA-EE-A2MJ-06 2 192272864 192272864 C T MYO1B Silent p.F860F 0.11 TCGA-EE-A2MJ-06 2 196729123 196729123 C T DNAH7 Missense_Mutation p.G2419E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 2 196753607 196753607 C T DNAH7 Silent p.L1715L 0.16 TCGA-EE-A2MJ-06 2 196791250 196791250 C T DNAH7 Missense_Mutation p.R1171Q 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 2 198285164 198285164 G A SF3B1 Missense_Mutation p.P135S 0.08 deleterious(0.02) possibly_damaging(0.703) TCGA-EE-A2MJ-06 2 202093740 202093740 C T CASP10 Silent p.S500S 0.17 TCGA-EE-A2MJ-06 2 202400826 202400826 A G ALS2CR11 Missense_Mutation p.M475T 0.12 tolerated(0.49) benign(0.017) TCGA-EE-A2MJ-06 2 202598155 202598155 G A ALS2 Silent p.F808F 0.12 TCGA-EE-A2MJ-06 2 203826198 203826198 C T CARF Intron 0.23 TCGA-EE-A2MJ-06 2 203980710 203980710 C T NBEAL1 Missense_Mutation p.P808S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 2 207170420 207170420 G A ZDBF2 Missense_Mutation p.E390K 0.24 deleterious(0.05) possibly_damaging(0.678) TCGA-EE-A2MJ-06 2 207613758 207613758 C T MDH1B Missense_Mutation p.G401E 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 2 207615786 207615786 C T MDH1B Silent p.V308V 0.20 TCGA-EE-A2MJ-06 2 209308228 209308228 C T PTH2R Missense_Mutation p.S222F 0.18 tolerated(0.35) benign(0.013) TCGA-EE-A2MJ-06 2 210557907 210557907 C T MAP2 Missense_Mutation p.S338L 0.11 tolerated_low_confidence(0.21) benign(0.001) TCGA-EE-A2MJ-06 2 211082805 211082805 T A ACADL Silent p.V85V 0.19 TCGA-EE-A2MJ-06 2 211179882 211179882 G A MYL1 5'UTR 0.09 TCGA-EE-A2MJ-06 2 212488669 212488669 C T ERBB4 Missense_Mutation p.G727D 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 2 215843724 215843724 G A ABCA12 Missense_Mutation p.A1594V 0.32 tolerated(0.07) benign(0.283) TCGA-EE-A2MJ-06 2 215851397 215851397 G A ABCA12 Silent p.V1344V 0.22 TCGA-EE-A2MJ-06 2 219000408 219000408 C T CXCR2 Missense_Mutation p.A295V 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2MJ-06 2 219134173 219134173 G A AAMP Missense_Mutation p.P69L 0.11 tolerated(0.24) benign(0) TCGA-EE-A2MJ-06 2 219292991 219292991 C T VIL1 Silent p.F166F 0.10 TCGA-EE-A2MJ-06 2 219870235 219870235 C T CCDC108 Missense_Mutation p.E1658K 0.08 tolerated(0.22) benign(0.03) TCGA-EE-A2MJ-06 2 220043652 220043652 C T FAM134A Missense_Mutation p.S97F 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 2 220111903 220111903 C T STK16 Silent p.I125I 0.20 TCGA-EE-A2MJ-06 2 220246064 220246064 G A DNPEP Missense_Mutation p.P411L 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 2 220250763 220250763 G A DNPEP Missense_Mutation p.R173C 0.17 deleterious(0) benign(0.231) TCGA-EE-A2MJ-06 2 220428326 220428326 G A OBSL1 Missense_Mutation p.P811S 0.10 tolerated(0.72) benign(0.109) TCGA-EE-A2MJ-06 2 220430018 220430018 C T OBSL1 Missense_Mutation p.E785K 0.22 tolerated(0.06) probably_damaging(0.948) TCGA-EE-A2MJ-06 2 220439824 220439824 G A INHA Missense_Mutation p.G226E 0.28 deleterious(0.03) possibly_damaging(0.616) TCGA-EE-A2MJ-06 2 222365857 222365857 C T EPHA4 Missense_Mutation p.D287N 0.19 tolerated(0.47) probably_damaging(0.956) TCGA-EE-A2MJ-06 2 225657756 225657756 G A DOCK10 Missense_Mutation p.S1749F 0.17 tolerated_low_confidence(0.69) benign(0.133) TCGA-EE-A2MJ-06 2 226446813 226446813 C T NYAP2 Missense_Mutation p.S227F 0.11 deleterious(0.02) probably_damaging(0.963) TCGA-EE-A2MJ-06 2 228159250 228159250 G A COL4A3 Missense_Mutation p.G1128S 0.19 unknown(0) TCGA-EE-A2MJ-06 2 228564158 228564158 G A SLC19A3 Silent p.I91I 0.16 TCGA-EE-A2MJ-06 2 228884047 228884047 C T SPHKAP Missense_Mutation p.G508E 0.22 deleterious(0.04) probably_damaging(0.978) TCGA-EE-A2MJ-06 2 228884669 228884669 G A SPHKAP Missense_Mutation p.P301S 0.25 tolerated(0.22) benign(0.009) TCGA-EE-A2MJ-06 2 229046312 229046312 C T SPHKAP Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-EE-A2MJ-06 2 230377608 230377608 G A DNER Silent p.F346F 0.20 TCGA-EE-A2MJ-06 2 230411772 230411772 G A DNER Missense_Mutation p.A295V 0.25 tolerated(0.11) benign(0.099) TCGA-EE-A2MJ-06 2 231177307 231177307 G A SP140 Missense_Mutation p.D838N 0.17 tolerated(0.07) probably_damaging(0.928) TCGA-EE-A2MJ-06 2 234602351 234602351 C T UGT1A6 Missense_Mutation p.S234L 0.14 deleterious(0.01) benign(0.17) TCGA-EE-A2MJ-06 2 234652431 234652431 C T UGT1A10 Intron 0.09 TCGA-EE-A2MJ-06 2 234839327 234839327 T C TRPM8 Silent p.F44F 0.08 TCGA-EE-A2MJ-06 2 237489756 237489756 C T ACKR3 Silent p.S216S 0.13 TCGA-EE-A2MJ-06 2 238881789 238881789 C T UBE2F Missense_Mutation p.L14F 0.10 tolerated(0.1) benign(0.094) TCGA-EE-A2MJ-06 2 25467048 25467048 G A DNMT3A Silent p.F609F 0.18 TCGA-EE-A2MJ-06 2 26501645 26501645 C T HADHB Silent p.F202F 0.11 TCGA-EE-A2MJ-06 2 26691294 26691294 C T OTOF Missense_Mutation p.E1358K 0.10 tolerated(0.44) benign(0.359) TCGA-EE-A2MJ-06 2 27360809 27360809 G A C2orf53 Missense_Mutation p.P130L 0.21 tolerated(0.33) benign(0.027) TCGA-EE-A2MJ-06 2 27799475 27799475 A G C2orf16 Missense_Mutation p.I12M 0.36 tolerated(1) benign(0.039) TCGA-EE-A2MJ-06 2 27799493 27799493 T C C2orf16 Silent p.T18T 0.27 TCGA-EE-A2MJ-06 2 28828750 28828750 C T PLB1 Missense_Mutation p.P998S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MJ-06 2 29356672 29356672 G A CLIP4 Silent p.S173S 0.11 TCGA-EE-A2MJ-06 2 29543651 29543651 C T ALK Silent p.R504R 0.19 TCGA-EE-A2MJ-06 2 31467274 31467274 C T EHD3 Missense_Mutation p.P121L 0.15 deleterious(0) possibly_damaging(0.729) TCGA-EE-A2MJ-06 2 31489123 31489123 C T EHD3 Silent p.A387A 0.11 TCGA-EE-A2MJ-06 2 37414600 37414600 C T SULT6B1 Nonsense_Mutation p.W32* 0.19 TCGA-EE-A2MJ-06 2 37468928 37468928 C T NDUFAF7 Missense_Mutation p.P206S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 2 37507065 37507065 G A PRKD3 Silent p.S332S 0.19 TCGA-EE-A2MJ-06 2 39944332 39944332 C T TMEM178A Missense_Mutation p.P279S 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2MJ-06 2 40387911 40387911 T C SLC8A1 Missense_Mutation p.S755G 0.12 deleterious(0.05) benign(0.049) TCGA-EE-A2MJ-06 2 42871289 42871290 TC G MTA3 Frame_Shift_Del p.V135Gfs*6 0.15 TCGA-EE-A2MJ-06 2 43927739 43927739 C T PLEKHH2 Missense_Mutation p.P548S 0.10 deleterious(0.04) benign(0.103) TCGA-EE-A2MJ-06 2 63101536 63101536 C T EHBP1 Missense_Mutation p.P387S 0.12 tolerated(0.51) benign(0.001) TCGA-EE-A2MJ-06 2 71043970 71043970 C T CLEC4F Silent p.Q181Q 0.17 TCGA-EE-A2MJ-06 2 71576268 71576268 C T ZNF638 Nonsense_Mutation p.Q62* 0.16 TCGA-EE-A2MJ-06 2 73678216 73678216 C T ALMS1 Missense_Mutation p.P1520L 0.10 benign(0.005) TCGA-EE-A2MJ-06 2 74594007 74594007 G A DCTN1 Missense_Mutation p.S790L 0.11 tolerated(0.08) probably_damaging(0.973) TCGA-EE-A2MJ-06 2 74751156 74751156 C T DQX1 Nonsense_Mutation p.W237* 0.19 TCGA-EE-A2MJ-06 2 74883761 74883761 G A SEMA4F Silent p.R82R 0.08 TCGA-EE-A2MJ-06 2 74885033 74885033 C T SEMA4F Silent p.L137L 0.14 TCGA-EE-A2MJ-06 2 74901796 74901796 T G SEMA4F Missense_Mutation p.S332A 0.07 tolerated(0.16) benign(0.078) TCGA-EE-A2MJ-06 2 85894825 85894825 C T SFTPB Missense_Mutation p.E70K 0.10 tolerated(0.2) benign(0.02) TCGA-EE-A2MJ-06 2 85925735 85925735 C T GNLY 3'UTR 0.15 TCGA-EE-A2MJ-06 2 86292422 86292422 G A POLR1A Missense_Mutation p.P678L 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 2 87085197 87085197 C T CD8B Missense_Mutation p.G129E 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MJ-06 2 8872048 8872048 G A KIDINS220 Missense_Mutation p.S1373L 0.08 tolerated_low_confidence(0.1) benign(0.103) TCGA-EE-A2MJ-06 2 88874650 88874650 G A EIF2AK3 Missense_Mutation p.S784F 0.08 deleterious(0.03) benign(0.211) TCGA-EE-A2MJ-06 2 95943131 95943131 C T PROM2 Silent p.H264H 0.13 TCGA-EE-A2MJ-06 2 96040071 96040071 C T KCNIP3 Missense_Mutation p.S70F 0.10 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MJ-06 2 96260890 96260890 G A TRIM43 Nonsense_Mutation p.W168* 0.12 TCGA-EE-A2MJ-06 2 98736213 98736213 T C VWA3B Missense_Mutation p.F177L 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MJ-06 2 99256428 99256428 G A MGAT4A Missense_Mutation p.H389Y 0.15 deleterious(0.01) benign(0.365) TCGA-EE-A2MJ-06 3 101535694 101535694 T A NXPE3 Nonsense_Mutation p.Y326* 0.09 TCGA-EE-A2MJ-06 3 10188288 10188288 G A VHL Missense_Mutation p.G144E 0.09 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MJ-06 3 10391825 10391825 G A ATP2B2 Missense_Mutation p.S792F 0.10 deleterious(0) possibly_damaging(0.732) TCGA-EE-A2MJ-06 3 111312974 111312974 C T ZBED2 Silent p.E25E 0.12 TCGA-EE-A2MJ-06 3 112185161 112185161 C T BTLA Missense_Mutation p.E222K 0.08 deleterious(0.04) benign(0.223) TCGA-EE-A2MJ-06 3 112358494 112358494 G A CCDC80 Missense_Mutation p.R87C 0.09 deleterious_low_confidence(0.04) benign(0.001) TCGA-EE-A2MJ-06 3 114069913 114069913 C T ZBTB20 Missense_Mutation p.D338N 0.14 tolerated(0.16) probably_damaging(0.959) TCGA-EE-A2MJ-06 3 118645011 118645011 G A IGSF11 Nonsense_Mutation p.R173* 0.08 TCGA-EE-A2MJ-06 3 120673799 120673799 G A STXBP5L Missense_Mutation p.G68S 0.11 deleterious(0) possibly_damaging(0.566) TCGA-EE-A2MJ-06 3 121001148 121001148 C T STXBP5L Missense_Mutation p.P716S 0.11 tolerated(0.68) benign(0.038) TCGA-EE-A2MJ-06 3 121303897 121303897 G A ARGFX Silent p.P118P 0.11 TCGA-EE-A2MJ-06 3 121712387 121712387 G A ILDR1 Silent p.H403H 0.14 TCGA-EE-A2MJ-06 3 121712643 121712643 G A ILDR1 Missense_Mutation p.S318F 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MJ-06 3 121825277 121825277 G A CD86 Silent p.T211T 0.10 TCGA-EE-A2MJ-06 3 121980930 121980930 G A CASR Missense_Mutation p.E350K 0.13 deleterious(0.05) probably_damaging(0.957) TCGA-EE-A2MJ-06 3 122002643 122002643 C T CASR Silent p.I624I 0.15 TCGA-EE-A2MJ-06 3 122274867 122274867 G A PARP9 Nonsense_Mutation p.Q86* 0.12 TCGA-EE-A2MJ-06 3 123044289 123044289 G A ADCY5 Silent p.I656I 0.11 TCGA-EE-A2MJ-06 3 123671450 123671450 A G CCDC14 Intron 0.11 TCGA-EE-A2MJ-06 3 124390733 124390733 C T KALRN Silent p.F401F 0.08 TCGA-EE-A2MJ-06 3 124438331 124438331 C T RP11-71H17.7 5'Flank 0.21 TCGA-EE-A2MJ-06 3 125824611 125824611 G A ALDH1L1 Missense_Mutation p.P881S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 3 126708364 126708364 C T PLXNA1 Missense_Mutation p.R310C 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 3 128204917 128204917 G A GATA2 Missense_Mutation p.P175L 0.11 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A2MJ-06 3 128696930 128696930 C T KIAA1257 Missense_Mutation p.G256R 0.09 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A2MJ-06 3 129183591 129183591 C T IFT122 Missense_Mutation p.S228L 0.10 deleterious(0.02) possibly_damaging(0.526) TCGA-EE-A2MJ-06 3 129247885 129247885 C T RHO Silent p.F103F 0.11 TCGA-EE-A2MJ-06 3 130311933 130311933 G A COL6A6 Missense_Mutation p.G1467E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 3 130449249 130449249 G A PIK3R4 Silent p.F496F 0.17 TCGA-EE-A2MJ-06 3 130613602 130613602 T G ATP2C1 Intron 0.15 TCGA-EE-A2MJ-06 3 133098932 133098932 C T TMEM108 Missense_Mutation p.S126F 0.14 deleterious_low_confidence(0.02) benign(0.115) TCGA-EE-A2MJ-06 3 13364826 13364826 C T NUP210 Missense_Mutation p.R1584K 0.08 tolerated(0.4) benign(0.004) TCGA-EE-A2MJ-06 3 134670780 134670780 G A EPHB1 Missense_Mutation p.E231K 0.09 deleterious(0.04) possibly_damaging(0.456) TCGA-EE-A2MJ-06 3 134960079 134960079 C T EPHB1 Silent p.I812I 0.09 TCGA-EE-A2MJ-06 3 137963936 137963936 C T ARMC8 Missense_Mutation p.H335Y 0.18 tolerated(0.35) possibly_damaging(0.541) TCGA-EE-A2MJ-06 3 138219580 138219580 T C CEP70 Silent p.E455E 0.08 TCGA-EE-A2MJ-06 3 13860784 13860784 A G WNT7A Missense_Mutation p.V236A 0.11 tolerated(0.13) benign(0.082) TCGA-EE-A2MJ-06 3 138668410 138668410 G A C3orf72 Missense_Mutation p.G50E 0.31 tolerated_low_confidence(0.9) probably_damaging(0.988) TCGA-EE-A2MJ-06 3 1394070 1394070 C T CNTN6 Missense_Mutation p.S476L 0.23 tolerated(0.36) benign(0.001) TCGA-EE-A2MJ-06 3 142188360 142188360 T C ATR Missense_Mutation p.K2124R 0.13 tolerated(0.1) benign(0.002) TCGA-EE-A2MJ-06 3 143550880 143550880 C T SLC9A9 Missense_Mutation p.G120E 0.13 tolerated(0.99) probably_damaging(1) TCGA-EE-A2MJ-06 3 145803060 145803060 C T PLOD2 Missense_Mutation p.M376I 0.16 tolerated(0.23) benign(0.053) TCGA-EE-A2MJ-06 3 14724407 14724407 C T C3orf20 Missense_Mutation p.P63S 0.16 tolerated(0.27) possibly_damaging(0.713) TCGA-EE-A2MJ-06 3 148925149 148925149 C T CP Splice_Site p.X346_splice 0.09 TCGA-EE-A2MJ-06 3 149290687 149290687 G A WWTR1 Missense_Mutation p.P178S 0.13 tolerated(0.15) benign(0.002) TCGA-EE-A2MJ-06 3 151161445 151161445 C T IGSF10 Missense_Mutation p.E1764K 0.09 tolerated(0.29) benign(0.044) TCGA-EE-A2MJ-06 3 151475347 151475347 G A AADACL2 Missense_Mutation p.D391N 0.09 tolerated(1) possibly_damaging(0.467) TCGA-EE-A2MJ-06 3 154834733 154834733 T C MME Silent p.F204F 0.16 TCGA-EE-A2MJ-06 3 164755722 164755722 G A SI Missense_Mutation p.P798S 0.15 deleterious(0) possibly_damaging(0.79) TCGA-EE-A2MJ-06 3 164755723 164755723 G A SI Silent p.I797I 0.15 TCGA-EE-A2MJ-06 3 164767590 164767590 G A SI Missense_Mutation p.P529L 0.16 deleterious(0.01) possibly_damaging(0.683) TCGA-EE-A2MJ-06 3 164792437 164792437 G A SI Missense_Mutation p.S46L 0.07 tolerated(0.76) benign(0.001) TCGA-EE-A2MJ-06 3 167045777 167045777 C T ZBBX Missense_Mutation p.G272E 0.16 deleterious(0.02) benign(0.212) TCGA-EE-A2MJ-06 3 168833626 168833626 C T MECOM Silent p.L555L 0.10 TCGA-EE-A2MJ-06 3 168834404 168834404 G A MECOM Missense_Mutation p.S296F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 3 169540285 169540285 C T LRRIQ4 Silent p.I192I 0.13 TCGA-EE-A2MJ-06 3 169540380 169540380 C T LRRIQ4 Missense_Mutation p.P224L 0.25 tolerated(0.62) benign(0.02) TCGA-EE-A2MJ-06 3 169644351 169644351 G A SAMD7 Missense_Mutation p.E101K 0.15 deleterious(0.03) benign(0.155) TCGA-EE-A2MJ-06 3 17052006 17052006 C T PLCL2 Missense_Mutation p.P264S 0.16 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2MJ-06 3 170715662 170715662 C T SLC2A2 3'UTR 0.12 TCGA-EE-A2MJ-06 3 170912416 170912416 C T TNIK Missense_Mutation p.M105I 0.10 deleterious(0) unknown(0) TCGA-EE-A2MJ-06 3 170945975 170945975 G A TNIK Silent p.I53I 0.15 TCGA-EE-A2MJ-06 3 17425431 17425431 C T TBC1D5 Missense_Mutation p.E196K 0.17 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A2MJ-06 3 179287619 179287619 T C ACTL6A Silent p.V11V 0.21 TCGA-EE-A2MJ-06 3 183014923 183014923 G A MCF2L2 Silent p.L446L 0.10 TCGA-EE-A2MJ-06 3 183041031 183041031 G A MCF2L2 Missense_Mutation p.H199Y 0.17 deleterious(0.02) possibly_damaging(0.688) TCGA-EE-A2MJ-06 3 183689601 183689601 G A ABCC5 Missense_Mutation p.S504F 0.21 deleterious(0.02) benign(0.322) TCGA-EE-A2MJ-06 3 183823957 183823957 C T HTR3E Silent p.L349L 0.10 TCGA-EE-A2MJ-06 3 186509532 186509532 C G RFC4 Silent p.V261V 0.21 TCGA-EE-A2MJ-06 3 189456461 189456461 G A TP63 Silent p.L74L 0.15 TCGA-EE-A2MJ-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.11 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MJ-06 3 189713176 189713176 G A LEPREL1 Missense_Mutation p.P179L 0.09 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MJ-06 3 191888276 191888276 G A FGF12 Missense_Mutation p.S195L 0.16 tolerated(0.25) possibly_damaging(0.489) TCGA-EE-A2MJ-06 3 194080084 194080084 G A LRRC15 Silent p.C569C 0.13 TCGA-EE-A2MJ-06 3 194081252 194081252 C T LRRC15 Missense_Mutation p.G180E 0.11 tolerated(0.53) benign(0.055) TCGA-EE-A2MJ-06 3 195486082 195486082 C T MUC4 Missense_Mutation p.G4967R 0.06 probably_damaging(0.979) TCGA-EE-A2MJ-06 3 195515992 195515992 C T MUC4 Missense_Mutation p.G820E 0.11 unknown(0) TCGA-EE-A2MJ-06 3 196198767 196198767 A G RNF168 Missense_Mutation p.S547P 0.08 tolerated(0.24) benign(0.004) TCGA-EE-A2MJ-06 3 196387757 196387757 C T NRROS Silent p.L415L 0.16 TCGA-EE-A2MJ-06 3 196454969 196454969 T G PIGX Missense_Mutation p.V165G 0.14 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MJ-06 3 196554117 196554117 G T PAK2 Missense_Mutation p.E467D 0.09 tolerated(0.27) benign(0.006) TCGA-EE-A2MJ-06 3 27761750 27761750 G A EOMES Silent p.F316F 0.15 TCGA-EE-A2MJ-06 3 30713418 30713418 C T TGFBR2 Missense_Mutation p.T273I 0.13 tolerated(0.15) benign(0.02) TCGA-EE-A2MJ-06 3 30713419 30713419 C T TGFBR2 Silent p.T273T 0.12 TCGA-EE-A2MJ-06 3 36872577 36872577 C T TRANK1 Missense_Mutation p.A2789T 0.11 deleterious(0) possibly_damaging(0.902) TCGA-EE-A2MJ-06 3 36872578 36872578 C T TRANK1 Silent p.V2788V 0.11 TCGA-EE-A2MJ-06 3 36876394 36876394 C G TRANK1 Missense_Mutation p.R1797T 0.20 tolerated(0.12) benign(0.131) TCGA-EE-A2MJ-06 3 36896923 36896923 G A TRANK1 Silent p.S1386S 0.13 TCGA-EE-A2MJ-06 3 36898681 36898681 C T TRANK1 Silent p.K800K 0.07 TCGA-EE-A2MJ-06 3 36898710 36898710 C T TRANK1 Missense_Mutation p.E791K 0.15 deleterious(0) probably_damaging(0.945) TCGA-EE-A2MJ-06 3 38044690 38044690 G A VILL Missense_Mutation p.R564Q 0.09 deleterious(0) probably_damaging(0.923) TCGA-EE-A2MJ-06 3 38591724 38591724 C T SCN5A 3'UTR 0.23 TCGA-EE-A2MJ-06 3 38622611 38622611 G A SCN5A Silent p.P1013P 0.17 TCGA-EE-A2MJ-06 3 38768112 38768112 C T SCN10A Silent p.V1024V 0.09 TCGA-EE-A2MJ-06 3 38812823 38812823 G A SCN10A Silent p.F182F 0.19 TCGA-EE-A2MJ-06 3 3887163 3887163 G A LRRN1 Missense_Mutation p.E280K 0.15 tolerated(0.29) benign(0.115) TCGA-EE-A2MJ-06 3 38936407 38936407 C T SCN11A Missense_Mutation p.E818K 0.09 deleterious(0.02) possibly_damaging(0.757) TCGA-EE-A2MJ-06 3 39174603 39174603 C T TTC21A Missense_Mutation p.P882S 0.13 tolerated(0.12) benign(0.259) TCGA-EE-A2MJ-06 3 39307287 39307287 G A CX3CR1 Silent p.I270I 0.25 TCGA-EE-A2MJ-06 3 39307958 39307958 C T CX3CR1 Missense_Mutation p.D47N 0.34 tolerated(0.1) possibly_damaging(0.894) TCGA-EE-A2MJ-06 3 42784515 42784515 C T CCDC13 Missense_Mutation p.R287Q 0.25 tolerated(0.51) benign(0.015) TCGA-EE-A2MJ-06 3 42906138 42906138 C T ACKR2 Silent p.F48F 0.11 TCGA-EE-A2MJ-06 3 44684905 44684905 C T ZNF197 Silent p.P761P 0.14 TCGA-EE-A2MJ-06 3 44776524 44776524 C T ZNF501 Missense_Mutation p.S204F 0.13 tolerated_low_confidence(0.36) benign(0.012) TCGA-EE-A2MJ-06 3 46009314 46009314 C T FYCO1 Silent p.L504L 0.11 TCGA-EE-A2MJ-06 3 48266958 48266958 A G CAMP 3'UTR 0.17 TCGA-EE-A2MJ-06 3 48685349 48685349 G A CELSR3 Nonsense_Mutation p.R2352* 0.11 TCGA-EE-A2MJ-06 3 49161226 49161226 G A LAMB2 Silent p.I1244I 0.13 TCGA-EE-A2MJ-06 3 49210394 49210394 C T KLHDC8B Silent p.P64P 0.30 TCGA-EE-A2MJ-06 3 49308822 49308822 C T C3orf62 Missense_Mutation p.E199K 0.13 deleterious(0.01) possibly_damaging(0.726) TCGA-EE-A2MJ-06 3 49688110 49688110 G A BSN Silent p.P528P 0.10 TCGA-EE-A2MJ-06 3 49692777 49692777 G A BSN Missense_Mutation p.D1930N 0.11 unknown(0) TCGA-EE-A2MJ-06 3 49939880 49939880 G A MST1R Missense_Mutation p.S388F 0.14 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2MJ-06 3 50102554 50102554 C T RBM6 Missense_Mutation p.P893S 0.13 tolerated(0.18) possibly_damaging(0.546) TCGA-EE-A2MJ-06 3 51274929 51274929 C T DOCK3 Silent p.I670I 0.19 TCGA-EE-A2MJ-06 3 51308341 51308341 G A DOCK3 Silent p.G817G 0.18 TCGA-EE-A2MJ-06 3 51967753 51967753 G A RRP9 Silent p.F435F 0.18 TCGA-EE-A2MJ-06 3 51968490 51968490 G A RRP9 Silent p.L420L 0.21 TCGA-EE-A2MJ-06 3 52088040 52088040 C T DUSP7 Missense_Mutation p.E290K 0.10 tolerated(0.16) benign(0.107) TCGA-EE-A2MJ-06 3 52257214 52257214 C T TLR9 Missense_Mutation p.G527D 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 3 52794827 52794827 G A NEK4 Missense_Mutation p.S316F 0.08 deleterious(0.04) benign(0.021) TCGA-EE-A2MJ-06 3 53736765 53736765 G A CACNA1D Missense_Mutation p.D440N 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2MJ-06 3 55733446 55733446 C T ERC2 Missense_Mutation p.G936E 0.06 tolerated(1) benign(0.003) TCGA-EE-A2MJ-06 3 56330403 56330403 G A ERC2 Missense_Mutation p.H240Y 0.14 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A2MJ-06 3 58486841 58486841 C T KCTD6 Nonsense_Mutation p.R66* 0.14 TCGA-EE-A2MJ-06 3 62518605 62518605 G A CADPS Silent p.I744I 0.11 TCGA-EE-A2MJ-06 3 62636752 62636752 G A CADPS Missense_Mutation p.R325C 0.14 deleterious(0) possibly_damaging(0.689) TCGA-EE-A2MJ-06 3 63823658 63823658 G A THOC7 Missense_Mutation p.R116C 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 3 64601692 64601692 C T ADAMTS9 Missense_Mutation p.E990K 0.08 deleterious(0.01) possibly_damaging(0.722) TCGA-EE-A2MJ-06 3 65361455 65361455 C T MAGI1 Missense_Mutation p.G1054E 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 3 81635304 81635304 G A GBE1 Missense_Mutation p.S425F 0.18 deleterious(0.01) benign(0.14) TCGA-EE-A2MJ-06 3 8672511 8672511 G A SSUH2 Missense_Mutation p.P169S 0.30 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MJ-06 3 9027564 9027564 C T SRGAP3 Missense_Mutation p.R980K 0.11 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MJ-06 3 97806032 97806032 G A OR5AC2 Missense_Mutation p.G6R 0.11 tolerated(0.11) benign(0.002) TCGA-EE-A2MJ-06 3 97868560 97868560 G A OR5H14 Missense_Mutation p.E111K 0.10 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A2MJ-06 3 98216810 98216810 G A OR5K2 Missense_Mutation p.E96K 0.08 deleterious(0.01) possibly_damaging(0.881) TCGA-EE-A2MJ-06 3 9879874 9879874 G A RPUSD3 Silent p.L294L 0.10 TCGA-EE-A2MJ-06 4 100134803 100134803 G A ADH6 Silent p.I74I 0.27 TCGA-EE-A2MJ-06 4 100203562 100203562 C T ADH1A Missense_Mutation p.E257K 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MJ-06 4 100268961 100268961 G A ADH1C Missense_Mutation p.P21S 0.09 probably_damaging(0.999) TCGA-EE-A2MJ-06 4 100512405 100512405 G A MTTP Missense_Mutation p.G172E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 104012420 104012420 G A BDH2 Silent p.L91L 0.28 TCGA-EE-A2MJ-06 4 104066729 104066729 G A CENPE Missense_Mutation p.S1508L 0.17 benign(0.062) TCGA-EE-A2MJ-06 4 104080030 104080030 G A CENPE Missense_Mutation p.T872I 0.24 benign(0.02) TCGA-EE-A2MJ-06 4 104510988 104510988 C T TACR3 Missense_Mutation p.D417N 0.25 tolerated(0.06) benign(0.002) TCGA-EE-A2MJ-06 4 110663747 110663747 G A CFI Silent p.N478N 0.09 TCGA-EE-A2MJ-06 4 110909851 110909851 G A EGF Missense_Mutation p.G907E 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MJ-06 4 111470973 111470973 C T ENPEP Missense_Mutation p.S811L 0.19 deleterious(0.02) benign(0.03) TCGA-EE-A2MJ-06 4 113303585 113303585 C T ALPK1 Silent p.I51I 0.36 TCGA-EE-A2MJ-06 4 114381320 114381320 C T CAMK2D Missense_Mutation p.R396Q 0.27 tolerated_low_confidence(0.08) benign(0.216) TCGA-EE-A2MJ-06 4 114452437 114452437 C T CAMK2D Missense_Mutation p.G179E 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 115760697 115760697 C T NDST4 Missense_Mutation p.R708Q 0.10 deleterious(0.04) probably_damaging(0.97) TCGA-EE-A2MJ-06 4 115767065 115767065 G A NDST4 Missense_Mutation p.P677S 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 4 115891729 115891729 C T NDST4 Missense_Mutation p.E360K 0.17 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MJ-06 4 119951608 119951608 G A SYNPO2 Missense_Mutation p.G560S 0.39 tolerated(0.99) benign(0.02) TCGA-EE-A2MJ-06 4 120192649 120192649 A T USP53 Missense_Mutation p.K545I 0.09 deleterious(0.01) benign(0.091) TCGA-EE-A2MJ-06 4 122068287 122068287 G A TNIP3 Nonsense_Mutation p.R295* 0.25 TCGA-EE-A2MJ-06 4 122749284 122749284 T A BBS7 Intron 0.24 TCGA-EE-A2MJ-06 4 123333892 123333892 G A ADAD1 Missense_Mutation p.E393K 0.09 tolerated(0.05) benign(0.175) TCGA-EE-A2MJ-06 4 126373926 126373926 C T FAT4 Missense_Mutation p.P3919S 0.14 possibly_damaging(0.742) TCGA-EE-A2MJ-06 4 126411233 126411233 G A FAT4 Nonsense_Mutation p.W4419* 0.27 TCGA-EE-A2MJ-06 4 126411537 126411537 C T FAT4 Silent p.V4520V 0.21 TCGA-EE-A2MJ-06 4 128688264 128688264 G A SLC25A31 Missense_Mutation p.M174I 0.24 tolerated(0.43) benign(0) TCGA-EE-A2MJ-06 4 13476015 13476015 G A RAB28 Missense_Mutation p.T63I 0.15 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A2MJ-06 4 138451522 138451522 G A PCDH18 Missense_Mutation p.P574L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 146092826 146092826 G A OTUD4 Missense_Mutation p.P32L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 4 146806916 146806916 G A ZNF827 Missense_Mutation p.S554F 0.10 deleterious(0.03) possibly_damaging(0.655) TCGA-EE-A2MJ-06 4 147741282 147741282 C T TTC29 Missense_Mutation p.E366K 0.11 tolerated(0.32) benign(0.008) TCGA-EE-A2MJ-06 4 148453722 148453722 G A EDNRA Missense_Mutation p.E205K 0.14 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A2MJ-06 4 151223869 151223869 C T LRBA Missense_Mutation p.G2653E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 155157247 155157247 G A DCHS2 Nonsense_Mutation p.Q2398* 0.10 TCGA-EE-A2MJ-06 4 15591241 15591241 A T CC2D2A Missense_Mutation p.Y1418F 0.20 tolerated(0.18) benign(0.174) TCGA-EE-A2MJ-06 4 156711039 156711039 C T GUCY1B3 Silent p.I157I 0.19 TCGA-EE-A2MJ-06 4 157771463 157771463 C T PDGFC Nonsense_Mutation p.W75* 0.10 TCGA-EE-A2MJ-06 4 15985959 15985959 G A PROM1 Missense_Mutation p.S767L 0.27 deleterious(0.04) possibly_damaging(0.657) TCGA-EE-A2MJ-06 4 164246855 164246855 T C NPY1R Missense_Mutation p.K252R 0.10 tolerated(0.33) benign(0.066) TCGA-EE-A2MJ-06 4 169013826 169013826 C T ANXA10 5'UTR 0.16 TCGA-EE-A2MJ-06 4 169105801 169105801 G A ANXA10 Missense_Mutation p.R292Q 0.25 tolerated(0.55) benign(0.058) TCGA-EE-A2MJ-06 4 169300899 169300899 G A DDX60L Missense_Mutation p.S1400F 0.31 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MJ-06 4 173730543 173730543 G A GALNTL6 Missense_Mutation p.M195I 0.27 tolerated(0.41) benign(0.097) TCGA-EE-A2MJ-06 4 173730544 173730544 G A GALNTL6 Missense_Mutation p.A196T 0.27 tolerated(0.16) benign(0.005) TCGA-EE-A2MJ-06 4 177608423 177608423 G A VEGFC Missense_Mutation p.P355S 0.08 deleterious(0.04) benign(0.094) TCGA-EE-A2MJ-06 4 183664394 183664394 G A TENM3 Missense_Mutation p.G1151S 0.37 deleterious(0) benign(0.02) TCGA-EE-A2MJ-06 4 185694825 185694825 C T ACSL1 Missense_Mutation p.G278E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 186435444 186435444 G A PDLIM3 Silent p.F126F 0.24 TCGA-EE-A2MJ-06 4 187004511 187004511 C T TLR3 Silent p.F557F 0.28 TCGA-EE-A2MJ-06 4 187521125 187521125 G A FAT1 Silent p.F4010F 0.09 TCGA-EE-A2MJ-06 4 189064937 189064937 C T TRIML1 Intron 0.08 TCGA-EE-A2MJ-06 4 2083370 2083370 G A POLN Silent p.F766F 0.15 TCGA-EE-A2MJ-06 4 20852243 20852243 C T KCNIP4 Missense_Mutation p.E71K 0.35 deleterious(0.01) benign(0.039) TCGA-EE-A2MJ-06 4 2273462 2273462 A G ZFYVE28 Missense_Mutation p.C790R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 4 25005516 25005516 G A LGI2 Missense_Mutation p.L399F 0.25 tolerated(0.27) possibly_damaging(0.622) TCGA-EE-A2MJ-06 4 25256861 25256861 C T PI4K2B Missense_Mutation p.H200Y 0.34 tolerated(0.1) possibly_damaging(0.699) TCGA-EE-A2MJ-06 4 3221983 3221983 C T HTT Silent p.F2439F 0.22 TCGA-EE-A2MJ-06 4 40428109 40428109 G A RBM47 Missense_Mutation p.P532S 0.12 tolerated_low_confidence(0.1) benign(0.024) TCGA-EE-A2MJ-06 4 40763290 40763290 G A NSUN7 Missense_Mutation p.V154I 0.11 deleterious(0.02) possibly_damaging(0.841) TCGA-EE-A2MJ-06 4 40778076 40778076 G A NSUN7 Missense_Mutation p.R279Q 0.25 deleterious(0.03) possibly_damaging(0.848) TCGA-EE-A2MJ-06 4 41652476 41652476 C A LIMCH1 Missense_Mutation p.P578T 0.32 tolerated(0.43) benign(0.011) TCGA-EE-A2MJ-06 4 41652477 41652477 C T LIMCH1 Missense_Mutation p.P578L 0.33 deleterious(0.02) benign(0.011) TCGA-EE-A2MJ-06 4 41691626 41691626 C T LIMCH1 Missense_Mutation p.L1033F 0.08 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MJ-06 4 4198981 4198981 G A OTOP1 Missense_Mutation p.P527L 0.11 tolerated(0.1) benign(0.013) TCGA-EE-A2MJ-06 4 42403154 42403154 C T SHISA3 Missense_Mutation p.R135C 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 4 42466951 42466951 C T ATP8A1 Missense_Mutation p.G823S 0.21 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MJ-06 4 42895295 42895295 G A GRXCR1 Silent p.R4R 0.12 TCGA-EE-A2MJ-06 4 43032513 43032513 T C GRXCR1 Missense_Mutation p.C277R 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 4 47548757 47548757 C T ATP10D Missense_Mutation p.H505Y 0.25 tolerated(0.09) benign(0.26) TCGA-EE-A2MJ-06 4 47563038 47563038 G A ATP10D Missense_Mutation p.E872K 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 4 47571048 47571048 C T ATP10D Silent p.F1016F 0.12 TCGA-EE-A2MJ-06 4 47593145 47593145 G A ATP10D Missense_Mutation p.R1343K 0.11 tolerated(0.07) benign(0.005) TCGA-EE-A2MJ-06 4 47605486 47605486 G A CORIN Missense_Mutation p.P914S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 48555248 48555248 G A FRYL Silent p.I1473I 0.09 TCGA-EE-A2MJ-06 4 48894821 48894821 G A OCIAD2 Silent p.L117L 0.10 TCGA-EE-A2MJ-06 4 48906604 48906604 C T OCIAD2 5'UTR 0.12 TCGA-EE-A2MJ-06 4 48994092 48994092 G A CWH43 Missense_Mutation p.D166N 0.24 deleterious(0.03) possibly_damaging(0.679) TCGA-EE-A2MJ-06 4 524291 524291 C T PIGG Silent p.D776D 0.19 TCGA-EE-A2MJ-06 4 52861180 52861180 G A LRRC66 Missense_Mutation p.P670S 0.33 tolerated(0.17) benign(0.071) TCGA-EE-A2MJ-06 4 54342990 54342990 C T LNX1 Missense_Mutation p.D608N 0.16 tolerated(0.13) possibly_damaging(0.493) TCGA-EE-A2MJ-06 4 56471515 56471515 G A NMU Missense_Mutation p.S121L 0.16 deleterious(0) possibly_damaging(0.9) TCGA-EE-A2MJ-06 4 57216119 57216119 C T AASDH Missense_Mutation p.E600K 0.12 deleterious(0.05) probably_damaging(0.99) TCGA-EE-A2MJ-06 4 57777225 57777225 C T REST Missense_Mutation p.P141S 0.18 tolerated(0.11) benign(0.047) TCGA-EE-A2MJ-06 4 57898610 57898610 C T IGFBP7 Missense_Mutation p.E271K 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.784) TCGA-EE-A2MJ-06 4 6055714 6055714 C T JAKMIP1 Intron 0.17 TCGA-EE-A2MJ-06 4 6374377 6374377 C T PPP2R2C Silent p.R166R 0.09 TCGA-EE-A2MJ-06 4 6642900 6642900 C T MRFAP1 Missense_Mutation p.A104V 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 4 6642901 6642901 C T MRFAP1 Silent p.A104A 0.11 TCGA-EE-A2MJ-06 4 66509130 66509130 G A EPHA5 Missense_Mutation p.S66L 0.38 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MJ-06 4 667114 667114 C T ATP5I Silent p.R56R 0.16 TCGA-EE-A2MJ-06 4 69343263 69343263 G C TMPRSS11E Missense_Mutation p.R295T 0.08 deleterious(0.02) possibly_damaging(0.723) TCGA-EE-A2MJ-06 4 69512998 69512998 C T UGT2B15 Missense_Mutation p.G473R 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A2MJ-06 4 69696584 69696584 G A UGT2B10 Missense_Mutation p.G525E 0.12 tolerated(0.75) benign(0.004) TCGA-EE-A2MJ-06 4 69962779 69962779 G A UGT2B7 Missense_Mutation p.E181K 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2MJ-06 4 70066279 70066279 G T UGT2B11 Missense_Mutation p.S490Y 0.09 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MJ-06 4 70455075 70455075 C T UGT2A1 3'UTR 0.25 TCGA-EE-A2MJ-06 4 7056555 7056555 C T TADA2B Missense_Mutation p.P346L 0.24 tolerated(0.08) benign(0.008) TCGA-EE-A2MJ-06 4 70798272 70798272 C T CSN1S1 5'UTR 0.31 TCGA-EE-A2MJ-06 4 70920059 70920059 G A HTN1 Silent p.K24K 0.33 TCGA-EE-A2MJ-06 4 71232569 71232569 G A SMR3A Missense_Mutation p.R88K 0.33 tolerated_low_confidence(0.97) unknown(0) TCGA-EE-A2MJ-06 4 71275270 71275270 C T PROL1 Silent p.F75F 0.13 TCGA-EE-A2MJ-06 4 74453617 74453617 G A RASSF6 Missense_Mutation p.R140C 0.08 tolerated(0.06) possibly_damaging(0.453) TCGA-EE-A2MJ-06 4 76928579 76928579 G A CXCL9 Silent p.F8F 0.08 TCGA-EE-A2MJ-06 4 76943002 76943002 C T CXCL10 3'UTR 0.12 TCGA-EE-A2MJ-06 4 77003000 77003000 G A ART3 Missense_Mutation p.M31I 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MJ-06 4 79369304 79369304 G A FRAS1 Silent p.G2036G 0.10 TCGA-EE-A2MJ-06 4 83417287 83417287 C T TMEM150C Silent p.L99L 0.10 TCGA-EE-A2MJ-06 4 83748524 83748524 G A SEC31A Nonsense_Mutation p.Q1097* 0.17 TCGA-EE-A2MJ-06 4 85623601 85623601 G A WDFY3 Missense_Mutation p.S2834L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 4 89018718 89018718 T G ABCG2 Missense_Mutation p.T512P 0.21 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2MJ-06 4 89042886 89042886 C T ABCG2 Missense_Mutation p.G197E 0.22 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 4 947123 947123 C T TMEM175 Missense_Mutation p.S203F 0.17 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2MJ-06 4 96256647 96256647 G A UNC5C Missense_Mutation p.P87L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 5 100147811 100147811 G A ST8SIA4 Missense_Mutation p.P274S 0.08 benign(0.007) TCGA-EE-A2MJ-06 5 102894904 102894904 G A NUDT12 Missense_Mutation p.P158S 0.09 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 5 110411749 110411749 C T TSLP Nonsense_Mutation p.R153* 0.23 TCGA-EE-A2MJ-06 5 11159743 11159743 G A CTNND2 Missense_Mutation p.R702W 0.12 deleterious(0) possibly_damaging(0.631) TCGA-EE-A2MJ-06 5 114482954 114482954 G A TRIM36 Missense_Mutation p.R146C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 5 11732304 11732304 C T CTNND2 Missense_Mutation p.G40R 0.22 deleterious(0.02) benign(0.141) TCGA-EE-A2MJ-06 5 1235756 1235756 G A SLC6A18 Silent p.R200R 0.08 TCGA-EE-A2MJ-06 5 1255502 1255502 G A TERT Silent p.L1019L 0.24 TCGA-EE-A2MJ-06 5 127674658 127674658 C T FBN2 Missense_Mutation p.E1147K 0.14 tolerated(0.05) benign(0.395) TCGA-EE-A2MJ-06 5 127728828 127728828 T G FBN2 Missense_Mutation p.T489P 0.14 tolerated(0.16) benign(0.222) TCGA-EE-A2MJ-06 5 128351617 128351617 G A SLC27A6 Missense_Mutation p.G337R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 5 132160479 132160479 G A SHROOM1 Missense_Mutation p.P357S 0.18 tolerated(0.17) benign(0.012) TCGA-EE-A2MJ-06 5 134147456 134147456 C T DDX46 Missense_Mutation p.A786V 0.15 tolerated(0.21) benign(0.016) TCGA-EE-A2MJ-06 5 135277292 135277292 G A FBXL21 RNA 0.14 TCGA-EE-A2MJ-06 5 13776782 13776782 C T DNAH5 Missense_Mutation p.E3047K 0.22 possibly_damaging(0.621) TCGA-EE-A2MJ-06 5 137803494 137803494 C T EGR1 Silent p.S452S 0.23 TCGA-EE-A2MJ-06 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.17 possibly_damaging(0.555) TCGA-EE-A2MJ-06 5 139889306 139889306 A C ANKHD1 Missense_Mutation p.N1284H 0.37 possibly_damaging(0.904) TCGA-EE-A2MJ-06 5 140166152 140166152 G A PCDHA1 Missense_Mutation p.E93K 0.12 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-EE-A2MJ-06 5 140175879 140175879 G A PCDHA2 Missense_Mutation p.E444K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-EE-A2MJ-06 5 140207725 140207725 C T PCDHA6 Missense_Mutation p.P17S 0.09 tolerated_low_confidence(0.57) benign(0) TCGA-EE-A2MJ-06 5 140207946 140207946 C T PCDHA6 Silent p.I90I 0.13 TCGA-EE-A2MJ-06 5 140215316 140215316 G A PCDHA7 Missense_Mutation p.D450N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A2MJ-06 5 140248978 140248978 G A PCDHA11 Missense_Mutation p.G97E 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.889) TCGA-EE-A2MJ-06 5 140433423 140433423 G A PCDHB1 Missense_Mutation p.E790K 0.25 tolerated(0.1) benign(0.05) TCGA-EE-A2MJ-06 5 140474611 140474611 C T PCDHB2 Silent p.F79F 0.22 TCGA-EE-A2MJ-06 5 140474698 140474698 C T PCDHB2 Silent p.F108F 0.13 TCGA-EE-A2MJ-06 5 140503681 140503681 C T PCDHB4 Missense_Mutation p.L701F 0.09 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-EE-A2MJ-06 5 140516679 140516679 G A PCDHB5 Missense_Mutation p.D555N 0.22 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-EE-A2MJ-06 5 140553474 140553474 C G PCDHB7 Missense_Mutation p.T353S 0.17 tolerated_low_confidence(0.18) benign(0.012) TCGA-EE-A2MJ-06 5 140554534 140554534 C T PCDHB7 Silent p.F706F 0.08 TCGA-EE-A2MJ-06 5 140558804 140558804 T G PCDHB8 Missense_Mutation p.S397A 0.09 deleterious_low_confidence(0.01) benign(0.017) TCGA-EE-A2MJ-06 5 140558863 140558863 C T PCDHB8 Silent p.A416A 0.09 TCGA-EE-A2MJ-06 5 140616324 140616324 C T PCDHB18 RNA 0.29 TCGA-EE-A2MJ-06 5 140710787 140710787 C T PCDHGA1 Missense_Mutation p.S179F 0.12 deleterious_low_confidence(0.03) benign(0.35) TCGA-EE-A2MJ-06 5 140720191 140720191 C T PCDHGA2 Silent p.F551F 0.24 TCGA-EE-A2MJ-06 5 140725214 140725214 G A PCDHGA3 Silent p.G538G 0.18 TCGA-EE-A2MJ-06 5 140731997 140731997 C T PCDHGB1 Nonsense_Mutation p.Q724* 0.26 TCGA-EE-A2MJ-06 5 140755443 140755443 C T PCDHGA6 Missense_Mutation p.S598L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.597) TCGA-EE-A2MJ-06 5 143853417 143853417 G A KCTD16 Missense_Mutation p.D343N 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MJ-06 5 145393604 145393604 C T SH3RF2 Missense_Mutation p.P347S 0.12 tolerated(0.47) benign(0.035) TCGA-EE-A2MJ-06 5 145464086 145464086 G A PLAC8L1 Missense_Mutation p.S148F 0.09 deleterious(0.02) benign(0.2) TCGA-EE-A2MJ-06 5 147665576 147665576 C T SPINK13 Missense_Mutation p.R84C 0.10 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A2MJ-06 5 149276290 149276290 T G PDE6A Missense_Mutation p.E486A 0.11 deleterious(0.01) benign(0.001) TCGA-EE-A2MJ-06 5 149457738 149457738 G A CSF1R Silent p.I222I 0.12 TCGA-EE-A2MJ-06 5 150578573 150578573 C T CCDC69 Missense_Mutation p.E102K 0.12 tolerated(0.11) benign(0.161) TCGA-EE-A2MJ-06 5 151771675 151771675 C T NMUR2 3'UTR 0.31 TCGA-EE-A2MJ-06 5 156770011 156770011 G A FNDC9 Silent p.L178L 0.10 TCGA-EE-A2MJ-06 5 160047949 160047949 G A ATP10B Silent p.I607I 0.20 TCGA-EE-A2MJ-06 5 16177850 16177850 C T MARCH11 Missense_Mutation p.M226I 0.25 tolerated(0.2) benign(0.032) TCGA-EE-A2MJ-06 5 171773190 171773190 G A SH3PXD2B Nonsense_Mutation p.Q380* 0.26 TCGA-EE-A2MJ-06 5 174868801 174868801 C T DRD1 Silent p.K434K 0.13 TCGA-EE-A2MJ-06 5 175528581 175528581 G A FAM153B Missense_Mutation p.E144K 0.16 tolerated_low_confidence(0.78) benign(0.274) TCGA-EE-A2MJ-06 5 175740750 175740750 A T SIMC1 Missense_Mutation p.E163D 0.12 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MJ-06 5 175774688 175774688 G A KIAA1191 Missense_Mutation p.P278L 0.12 tolerated(0.05) benign(0.131) TCGA-EE-A2MJ-06 5 175774689 175774689 G A KIAA1191 Missense_Mutation p.P278S 0.12 tolerated(0.23) benign(0.076) TCGA-EE-A2MJ-06 5 175921237 175921237 T A FAF2 Missense_Mutation p.F208I 0.11 deleterious(0) benign(0.312) TCGA-EE-A2MJ-06 5 176024766 176024766 G A GPRIN1 Silent p.S690S 0.16 TCGA-EE-A2MJ-06 5 176894001 176894001 G A DBN1 Silent p.F208F 0.22 TCGA-EE-A2MJ-06 5 178310847 178310847 C T ZNF354B Missense_Mutation p.P465L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 5 178541047 178541047 C T ADAMTS2 Missense_Mutation p.E1153K 0.09 tolerated(0.23) benign(0.002) TCGA-EE-A2MJ-06 5 179302075 179302075 G A TBC1D9B Silent p.F671F 0.11 TCGA-EE-A2MJ-06 5 180055958 180055958 G A FLT4 Silent p.L343L 0.18 TCGA-EE-A2MJ-06 5 180419956 180419956 C T BTNL3 Missense_Mutation p.H65Y 0.17 tolerated(0.15) benign(0.235) TCGA-EE-A2MJ-06 5 180622102 180622102 C T TRIM7 3'UTR 0.33 TCGA-EE-A2MJ-06 5 225537 225537 G A SDHA Missense_Mutation p.G106R 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MJ-06 5 225538 225538 G A SDHA Missense_Mutation p.G106E 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MJ-06 5 23526486 23526486 C T PRDM9 Missense_Mutation p.P430L 0.20 tolerated(0.3) benign(0.004) TCGA-EE-A2MJ-06 5 23527702 23527702 G A PRDM9 Silent p.R835R 0.13 TCGA-EE-A2MJ-06 5 24488051 24488051 A - CDH10 Frame_Shift_Del p.F696Lfs*23 0.18 TCGA-EE-A2MJ-06 5 31401632 31401632 G A DROSHA Silent p.I1344I 0.12 TCGA-EE-A2MJ-06 5 32090662 32090662 G A PDZD2 Missense_Mutation p.G2370R 0.54 deleterious(0.01) possibly_damaging(0.894) TCGA-EE-A2MJ-06 5 32248166 32248166 G A MTMR12 Silent p.F321F 0.11 TCGA-EE-A2MJ-06 5 32387754 32387754 G A ZFR Silent p.L800L 0.12 TCGA-EE-A2MJ-06 5 33658334 33658334 G A ADAMTS12 Missense_Mutation p.S382L 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 5 33683134 33683134 C T ADAMTS12 Missense_Mutation p.E302K 0.28 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MJ-06 5 33947288 33947288 G A SLC45A2 Missense_Mutation p.H450Y 0.22 tolerated(0.15) benign(0.047) TCGA-EE-A2MJ-06 5 35806857 35806857 G A SPEF2 Missense_Mutation p.E1687K 0.30 tolerated(0.34) benign(0.204) TCGA-EE-A2MJ-06 5 35957318 35957318 C T UGT3A1 Silent p.V349V 0.20 TCGA-EE-A2MJ-06 5 37183083 37183083 G A C5orf42 Missense_Mutation p.P1734S 0.14 tolerated(0.06) benign(0.222) TCGA-EE-A2MJ-06 5 38463998 38463998 C T EGFLAM Silent p.I988I 0.23 TCGA-EE-A2MJ-06 5 38496631 38496631 C T LIFR Missense_Mutation p.E580K 0.22 tolerated(0.4) benign(0.003) TCGA-EE-A2MJ-06 5 38884075 38884075 G A OSMR Missense_Mutation p.E189K 0.08 tolerated(0.09) benign(0.063) TCGA-EE-A2MJ-06 5 38925388 38925388 C T OSMR Silent p.F709F 0.11 TCGA-EE-A2MJ-06 5 40764857 40764857 C T PRKAA1 Nonsense_Mutation p.W450* 0.21 TCGA-EE-A2MJ-06 5 40841643 40841643 C T CARD6 Silent p.L53L 0.12 TCGA-EE-A2MJ-06 5 41058246 41058246 G A MROH2B Silent p.D225D 0.15 TCGA-EE-A2MJ-06 5 41176728 41176728 C T C6 Silent p.L339L 0.15 TCGA-EE-A2MJ-06 5 41203264 41203264 G A C6 Silent p.F23F 0.09 TCGA-EE-A2MJ-06 5 427983 427983 G A AHRR Missense_Mutation p.G279E 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 5 427986 427986 C T AHRR Missense_Mutation p.A280V 0.14 deleterious(0.04) possibly_damaging(0.557) TCGA-EE-A2MJ-06 5 43246149 43246149 G A NIM1K Missense_Mutation p.G91E 0.17 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MJ-06 5 45645578 45645578 G A HCN1 Silent p.F186F 0.24 TCGA-EE-A2MJ-06 5 54649091 54649091 C T SKIV2L2 Silent p.F509F 0.11 TCGA-EE-A2MJ-06 5 57755646 57755646 G A PLK2 Silent p.S47S 0.10 TCGA-EE-A2MJ-06 5 64748012 64748012 C T ADAMTS6 Missense_Mutation p.G292E 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A2MJ-06 5 73931021 73931021 G A ENC1 Silent p.L430L 0.22 TCGA-EE-A2MJ-06 5 73931360 73931360 G A ENC1 Silent p.A317A 0.29 TCGA-EE-A2MJ-06 5 80409618 80409618 G A RASGRF2 Silent p.Q783Q 0.15 TCGA-EE-A2MJ-06 5 89924621 89924621 G A GPR98 Missense_Mutation p.G494E 0.30 probably_damaging(0.972) TCGA-EE-A2MJ-06 5 90040908 90040908 G A GPR98 Nonsense_Mutation p.W3532* 0.11 TCGA-EE-A2MJ-06 5 9190535 9190535 G A SEMA5A Silent p.L373L 0.17 TCGA-EE-A2MJ-06 5 92929319 92929319 C T NR2F1 Missense_Mutation p.S348L 0.15 deleterious(0) benign(0.146) TCGA-EE-A2MJ-06 5 95746664 95746664 G A PCSK1 Silent p.F303F 0.11 TCGA-EE-A2MJ-06 6 100404031 100404031 G A MCHR2 5'UTR 0.10 TCGA-EE-A2MJ-06 6 100841738 100841738 C T SIM1 Missense_Mutation p.E399K 0.10 deleterious(0) possibly_damaging(0.87) TCGA-EE-A2MJ-06 6 106967774 106967774 C T AIM1 Silent p.F489F 0.27 TCGA-EE-A2MJ-06 6 10926589 10926589 G A SYCP2L Silent p.T412T 0.21 TCGA-EE-A2MJ-06 6 109748351 109748351 G A PPIL6 Silent p.F143F 0.17 TCGA-EE-A2MJ-06 6 110763633 110763633 G A SLC22A16 Missense_Mutation p.P333S 0.10 tolerated(0.61) benign(0.079) TCGA-EE-A2MJ-06 6 117622146 117622146 T A ROS1 Missense_Mutation p.S2242C 0.21 deleterious(0.01) benign(0.155) TCGA-EE-A2MJ-06 6 117708132 117708132 T C ROS1 Missense_Mutation p.K682R 0.12 tolerated(0.12) benign(0.014) TCGA-EE-A2MJ-06 6 117888030 117888030 G A GOPC Silent p.I415I 0.18 TCGA-EE-A2MJ-06 6 119301410 119301410 C T FAM184A Missense_Mutation p.E732K 0.19 tolerated(0.06) probably_damaging(0.976) TCGA-EE-A2MJ-06 6 127775078 127775078 C T KIAA0408 Missense_Mutation p.E17K 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 6 130164702 130164702 G A TMEM244 Missense_Mutation p.P56S 0.13 tolerated(0.08) possibly_damaging(0.651) TCGA-EE-A2MJ-06 6 132176142 132176142 C T ENPP1 Missense_Mutation p.L232F 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A2MJ-06 6 132938398 132938398 C T TAAR2 Missense_Mutation p.G316D 0.48 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A2MJ-06 6 132939276 132939276 G A TAAR2 Silent p.F23F 0.19 TCGA-EE-A2MJ-06 6 133789852 133789852 G A EYA4 Missense_Mutation p.G318E 0.21 tolerated(0.16) benign(0.237) TCGA-EE-A2MJ-06 6 137019667 137019667 G A MAP3K5 Missense_Mutation p.R256C 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 6 138607888 138607888 G A KIAA1244 Missense_Mutation p.D874N 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2MJ-06 6 139186178 139186178 C T ECT2L Missense_Mutation p.S446F 0.09 tolerated(0.72) benign(0.024) TCGA-EE-A2MJ-06 6 143092446 143092446 G A HIVEP2 Missense_Mutation p.P1144S 0.10 tolerated(0.2) benign(0.021) TCGA-EE-A2MJ-06 6 144262598 144262598 G A PLAGL1 Missense_Mutation p.S452F 0.09 deleterious(0) benign(0.259) TCGA-EE-A2MJ-06 6 150690282 150690282 G A IYD Missense_Mutation p.E39K 0.12 tolerated(0.33) benign(0.009) TCGA-EE-A2MJ-06 6 151054870 151054870 C T PLEKHG1 Missense_Mutation p.S18L 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 6 152539445 152539445 G A SYNE1 Missense_Mutation p.P7380S 0.09 probably_damaging(0.996) TCGA-EE-A2MJ-06 6 152652268 152652268 G A SYNE1 Missense_Mutation p.R4518C 0.12 probably_damaging(0.999) TCGA-EE-A2MJ-06 6 152708227 152708227 C T SYNE1 Missense_Mutation p.D2823N 0.09 probably_damaging(0.999) TCGA-EE-A2MJ-06 6 152793506 152793506 C T SYNE1 Missense_Mutation p.E465K 0.10 benign(0.119) TCGA-EE-A2MJ-06 6 152832177 152832177 C T SYNE1 Missense_Mutation p.G124E 0.10 probably_damaging(0.99) TCGA-EE-A2MJ-06 6 153075349 153075349 T A VIP Silent p.V52V 0.19 TCGA-EE-A2MJ-06 6 15517407 15517407 G A JARID2 Missense_Mutation p.E1156K 0.26 tolerated(0.05) possibly_damaging(0.881) TCGA-EE-A2MJ-06 6 155450721 155450721 G A TIAM2 Missense_Mutation p.E122K 0.25 tolerated_low_confidence(0.18) benign(0.001) TCGA-EE-A2MJ-06 6 158514070 158514070 C T SYNJ2 Silent p.L1226L 0.17 TCGA-EE-A2MJ-06 6 158549146 158549146 G A SERAC1 Missense_Mutation p.R337C 0.17 deleterious(0.03) benign(0.004) TCGA-EE-A2MJ-06 6 159187842 159187842 G A EZR 3'UTR 0.15 TCGA-EE-A2MJ-06 6 159463277 159463277 C T TAGAP Splice_Site p.X50_splice 0.17 TCGA-EE-A2MJ-06 6 159682253 159682253 C T FNDC1 Missense_Mutation p.H1736Y 0.13 tolerated(0.69) benign(0.127) TCGA-EE-A2MJ-06 6 160430071 160430071 T A IGF2R Missense_Mutation p.S107T 0.14 tolerated(0.49) benign(0.001) TCGA-EE-A2MJ-06 6 160430072 160430072 C A IGF2R Missense_Mutation p.S107Y 0.12 tolerated(0.35) benign(0.016) TCGA-EE-A2MJ-06 6 160906919 160906919 C T LPAL2 RNA 0.09 TCGA-EE-A2MJ-06 6 160977125 160977125 C T LPA Silent p.R1635R 0.20 TCGA-EE-A2MJ-06 6 161127561 161127561 G A PLG Missense_Mutation p.E58K 0.18 tolerated(0.72) benign(0.014) TCGA-EE-A2MJ-06 6 161508729 161508729 C T MAP3K4 Missense_Mutation p.P856S 0.17 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A2MJ-06 6 165715342 165715342 C T C6orf118 Missense_Mutation p.E157K 0.34 tolerated(0.41) benign(0.008) TCGA-EE-A2MJ-06 6 166580938 166580938 C G T Missense_Mutation p.E48Q 0.11 deleterious(0) benign(0.028) TCGA-EE-A2MJ-06 6 167550192 167550192 C T CCR6 Silent p.S158S 0.10 TCGA-EE-A2MJ-06 6 167708163 167708163 C T UNC93A Silent p.S82S 0.10 TCGA-EE-A2MJ-06 6 168445543 168445543 C T KIF25 Missense_Mutation p.S341F 0.14 deleterious(0.02) possibly_damaging(0.874) TCGA-EE-A2MJ-06 6 169623560 169623560 C T THBS2 Silent p.R928R 0.08 TCGA-EE-A2MJ-06 6 17551692 17551692 C T CAP2 Intron 0.11 TCGA-EE-A2MJ-06 6 17637557 17637557 G A NUP153 Missense_Mutation p.S764L 0.10 tolerated(0.21) benign(0.01) TCGA-EE-A2MJ-06 6 20490568 20490568 C T E2F3 Silent p.L435L 0.09 TCGA-EE-A2MJ-06 6 24146025 24146025 G A NRSN1 Missense_Mutation p.E147K 0.11 deleterious(0.03) possibly_damaging(0.853) TCGA-EE-A2MJ-06 6 24533816 24533816 G A ALDH5A1 Missense_Mutation p.G508E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 6 24581231 24581231 C T KIAA0319 Missense_Mutation p.G401E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 6 25777040 25777040 G A SLC17A4 Missense_Mutation p.G374E 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 6 25862090 25862090 G A SLC17A3 Silent p.I157I 0.17 TCGA-EE-A2MJ-06 6 25917050 25917050 G A SLC17A2 Missense_Mutation p.P265S 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MJ-06 6 26405780 26405780 T G BTN3A1 5'UTR 0.08 TCGA-EE-A2MJ-06 6 27419180 27419180 G A ZNF184 Missense_Mutation p.H720Y 0.09 deleterious(0) possibly_damaging(0.462) TCGA-EE-A2MJ-06 6 2833919 2833919 C T SERPINB1 Missense_Mutation p.D355N 0.13 tolerated(0.08) possibly_damaging(0.764) TCGA-EE-A2MJ-06 6 28541181 28541181 G A SCAND3 Missense_Mutation p.P829S 0.16 tolerated_low_confidence(0.73) probably_damaging(0.994) TCGA-EE-A2MJ-06 6 2893707 2893707 C T SERPINB9 Missense_Mutation p.G169R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 6 29142318 29142318 G A OR2J2 Silent p.A302A 0.09 TCGA-EE-A2MJ-06 6 29408542 29408542 C T OR10C1 Silent p.F250F 0.09 TCGA-EE-A2MJ-06 6 30078327 30078327 C T TRIM31 Silent p.G214G 0.21 TCGA-EE-A2MJ-06 6 30558497 30558497 C T ABCF1 3'UTR 0.13 TCGA-EE-A2MJ-06 6 30864868 30864868 T A DDR1 Silent p.P649P 0.08 TCGA-EE-A2MJ-06 6 30920802 30920802 G A DPCR1 Missense_Mutation p.D1364N 0.17 deleterious(0) benign(0.008) TCGA-EE-A2MJ-06 6 31597589 31597589 C A PRRC2A Missense_Mutation p.L741I 0.11 benign(0.364) TCGA-EE-A2MJ-06 6 31639771 31639771 C T CSNK2B-LY6G5B-1181 3'UTR 0.10 TCGA-EE-A2MJ-06 6 31683147 31683147 T G LY6G6D Missense_Mutation p.F5L 0.08 tolerated(1) benign(0.294) TCGA-EE-A2MJ-06 6 31765514 31765514 G A LSM2 3'UTR 0.12 TCGA-EE-A2MJ-06 6 31833142 31833142 G A SLC44A4 Silent p.F570F 0.10 TCGA-EE-A2MJ-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.16 TCGA-EE-A2MJ-06 6 32118437 32118437 G A PRRT1 Missense_Mutation p.P89L 0.12 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A2MJ-06 6 32170246 32170246 C T NOTCH4 Missense_Mutation p.G1121E 0.10 tolerated(0.34) benign(0.037) TCGA-EE-A2MJ-06 6 32185774 32185774 G A NOTCH4 Missense_Mutation p.P541L 0.06 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MJ-06 6 33263311 33263311 G A RGL2 Silent p.L332L 0.18 TCGA-EE-A2MJ-06 6 33289562 33289562 G A DAXX Silent p.A47A 0.16 TCGA-EE-A2MJ-06 6 33289563 33289563 G A DAXX Missense_Mutation p.A47V 0.16 tolerated(0.21) benign(0.438) TCGA-EE-A2MJ-06 6 33641370 33641370 C T ITPR3 Silent p.F977F 0.15 TCGA-EE-A2MJ-06 6 33762584 33762584 T G MLN 3'UTR 0.21 TCGA-EE-A2MJ-06 6 35213058 35213058 A T SCUBE3 Missense_Mutation p.N819Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 6 35428335 35428335 C T FANCE Silent p.I441I 0.10 TCGA-EE-A2MJ-06 6 35446224 35446224 G A TEAD3 Missense_Mutation p.S156F 0.12 tolerated(0.42) benign(0.396) TCGA-EE-A2MJ-06 6 35543668 35543668 C T FKBP5 Missense_Mutation p.E440K 0.16 tolerated(0.25) benign(0.001) TCGA-EE-A2MJ-06 6 35543679 35543679 C G FKBP5 Missense_Mutation p.G436A 0.15 tolerated(0.72) benign(0) TCGA-EE-A2MJ-06 6 35927554 35927554 G A SLC26A8 Silent p.F556F 0.18 TCGA-EE-A2MJ-06 6 36020501 36020501 T A MAPK14 Missense_Mutation p.L48I 0.09 tolerated(0.18) benign(0.003) TCGA-EE-A2MJ-06 6 36172537 36172537 C T BRPF3 Silent p.V517V 0.08 TCGA-EE-A2MJ-06 6 36178189 36178189 C T BRPF3 Missense_Mutation p.A688V 0.12 tolerated(0.34) probably_damaging(0.999) TCGA-EE-A2MJ-06 6 36293117 36293117 G A C6orf222 Missense_Mutation p.P371S 0.15 tolerated(0.29) benign(0.065) TCGA-EE-A2MJ-06 6 37605969 37605969 C T MDGA1 Intron 0.14 TCGA-EE-A2MJ-06 6 37622271 37622271 G A MDGA1 Missense_Mutation p.P254L 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MJ-06 6 38029438 38029438 C T ZFAND3 Missense_Mutation p.S61F 0.10 deleterious(0.05) possibly_damaging(0.526) TCGA-EE-A2MJ-06 6 3850990 3850990 C T FAM50B Silent p.P315P 0.23 TCGA-EE-A2MJ-06 6 39046896 39046896 C T GLP1R Silent p.F321F 0.11 TCGA-EE-A2MJ-06 6 39159209 39159209 C T KCNK5 Silent p.G319G 0.10 TCGA-EE-A2MJ-06 6 39162536 39162536 C T KCNK5 Missense_Mutation p.G100E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 6 39285722 39285722 C T KCNK16 Missense_Mutation p.G112E 0.15 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MJ-06 6 41129230 41129230 C T TREM2 Silent p.L54L 0.11 TCGA-EE-A2MJ-06 6 41185544 41185544 G A TREML3P RNA 0.26 TCGA-EE-A2MJ-06 6 41250262 41250262 G A TREM1 Missense_Mutation p.H93Y 0.11 deleterious(0) benign(0.136) TCGA-EE-A2MJ-06 6 41654901 41654901 C T TFEB Missense_Mutation p.R245K 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 6 41655724 41655724 G A TFEB Missense_Mutation p.P198S 0.15 tolerated(0.17) possibly_damaging(0.859) TCGA-EE-A2MJ-06 6 41753099 41753099 G A PRICKLE4 Missense_Mutation p.E135K 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A2MJ-06 6 42227387 42227387 C T TRERF1 Silent p.K653K 0.17 TCGA-EE-A2MJ-06 6 42637833 42637833 C T UBR2 Silent p.I1295I 0.12 TCGA-EE-A2MJ-06 6 42942623 42942623 G A PEX6 Nonsense_Mutation p.Q346* 0.20 TCGA-EE-A2MJ-06 6 43018889 43018889 G T CUL7 Silent p.S434S 0.11 TCGA-EE-A2MJ-06 6 43308624 43308624 G A ZNF318 Silent p.I1133I 0.10 TCGA-EE-A2MJ-06 6 43323411 43323411 G A ZNF318 Missense_Mutation p.P554L 0.08 benign(0.025) TCGA-EE-A2MJ-06 6 44141081 44141081 G A CAPN11 Silent p.R263R 0.17 TCGA-EE-A2MJ-06 6 44387332 44387332 C T CDC5L Silent p.F413F 0.09 TCGA-EE-A2MJ-06 6 46129414 46129414 C T ENPP5 Silent p.K361K 0.09 TCGA-EE-A2MJ-06 6 46826169 46826169 C T GPR116 Silent p.T1157T 0.28 TCGA-EE-A2MJ-06 6 46979809 46979809 C T GPR110 Silent p.S350S 0.41 TCGA-EE-A2MJ-06 6 47200576 47200576 A T TNFRSF21 Silent p.I631I 0.19 TCGA-EE-A2MJ-06 6 47646785 47646785 G A GPR111 Missense_Mutation p.G129E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 6 47649491 47649491 C T GPR111 Missense_Mutation p.S399F 0.11 tolerated(0.39) probably_damaging(0.927) TCGA-EE-A2MJ-06 6 47682166 47682166 G A GPR115 Silent p.S395S 0.15 TCGA-EE-A2MJ-06 6 47685075 47685075 G A GPR115 Silent p.S674S 0.21 TCGA-EE-A2MJ-06 6 47846657 47846657 G A PTCHD4 Silent p.I641I 0.17 TCGA-EE-A2MJ-06 6 51907788 51907788 G A PKHD1 Missense_Mutation p.P989L 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MJ-06 6 52696655 52696655 G A GSTA5 Silent p.F220F 0.14 TCGA-EE-A2MJ-06 6 52992988 52992988 T C GCM1 3'UTR 0.16 TCGA-EE-A2MJ-06 6 53989457 53989457 G A MLIP Missense_Mutation p.E136K 0.11 tolerated(0.27) possibly_damaging(0.555) TCGA-EE-A2MJ-06 6 56374636 56374636 C T DST Silent p.L3649L 0.16 TCGA-EE-A2MJ-06 6 64004938 64004938 C T LGSN Missense_Mutation p.D15N 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.69) TCGA-EE-A2MJ-06 6 64422952 64422952 T G PHF3 Missense_Mutation p.F1823C 0.11 deleterious(0) probably_damaging(0.929) TCGA-EE-A2MJ-06 6 70926710 70926710 G A COL9A1 Missense_Mutation p.P886S 0.22 probably_damaging(1) TCGA-EE-A2MJ-06 6 72596847 72596847 G A RIMS1 Missense_Mutation p.D41N 0.36 deleterious(0.04) probably_damaging(0.991) TCGA-EE-A2MJ-06 6 7569424 7569424 C T DSP Silent p.I475I 0.08 TCGA-EE-A2MJ-06 6 7580518 7580518 G A DSP Silent p.Q1365Q 0.12 TCGA-EE-A2MJ-06 6 76022611 76022611 G A FILIP1 Silent p.S979S 0.16 TCGA-EE-A2MJ-06 6 76657234 76657234 C T IMPG1 Missense_Mutation p.R614Q 0.12 tolerated(1) benign(0.101) TCGA-EE-A2MJ-06 6 82891638 82891638 G A IBTK Missense_Mutation p.S1228F 0.30 tolerated_low_confidence(0.5) benign(0.025) TCGA-EE-A2MJ-06 6 83847269 83847269 T A DOPEY1 Missense_Mutation p.S1170T 0.26 tolerated_low_confidence(0.34) benign(0.027) TCGA-EE-A2MJ-06 6 83872624 83872624 C T DOPEY1 Missense_Mutation p.R2360W 0.21 deleterious(0) possibly_damaging(0.582) TCGA-EE-A2MJ-06 6 86201773 86201773 G A NT5E Missense_Mutation p.R480Q 0.23 deleterious(0.03) benign(0.059) TCGA-EE-A2MJ-06 6 97051592 97051592 C T FHL5 Missense_Mutation p.R35C 0.12 deleterious(0.02) possibly_damaging(0.513) TCGA-EE-A2MJ-06 7 100086302 100086302 C T NYAP1 Missense_Mutation p.P320S 0.09 tolerated(0.75) benign(0.003) TCGA-EE-A2MJ-06 7 100320646 100320646 C T EPO Nonsense_Mutation p.R158* 0.08 TCGA-EE-A2MJ-06 7 100350649 100350649 A G ZAN Missense_Mutation p.E974G 0.16 unknown(0) TCGA-EE-A2MJ-06 7 100361455 100361455 C T ZAN Missense_Mutation p.S1338F 0.12 unknown(0) TCGA-EE-A2MJ-06 7 100373332 100373332 C T ZAN Silent p.I2022I 0.15 TCGA-EE-A2MJ-06 7 100386863 100386863 C T ZAN Silent p.V2416V 0.16 TCGA-EE-A2MJ-06 7 100549700 100549700 C T MUC3A Missense_Mutation p.S94F 0.14 tolerated(0.13) unknown(0) TCGA-EE-A2MJ-06 7 100676513 100676513 G A MUC17 Missense_Mutation p.E606K 0.11 benign(0.259) TCGA-EE-A2MJ-06 7 102574798 102574798 G A LRRC17 Silent p.E146E 0.10 TCGA-EE-A2MJ-06 7 105142951 105142951 G A PUS7 Missense_Mutation p.P216S 0.10 tolerated(0.11) benign(0.057) TCGA-EE-A2MJ-06 7 105752697 105752697 G A SYPL1 Intron 0.19 TCGA-EE-A2MJ-06 7 106509130 106509130 G A PIK3CG Missense_Mutation p.R375Q 0.20 tolerated(0.6) benign(0.005) TCGA-EE-A2MJ-06 7 107431658 107431658 C T SLC26A3 Missense_Mutation p.M135I 0.18 tolerated(0.08) benign(0.006) TCGA-EE-A2MJ-06 7 107746957 107746957 G A LAMB4 Nonsense_Mutation p.Q218* 0.31 TCGA-EE-A2MJ-06 7 113519087 113519087 C T PPP1R3A Missense_Mutation p.G687E 0.07 tolerated(1) benign(0.004) TCGA-EE-A2MJ-06 7 113519756 113519756 C T PPP1R3A Missense_Mutation p.G464E 0.23 tolerated(0.21) benign(0.008) TCGA-EE-A2MJ-06 7 116199076 116199076 C T CAV1 Missense_Mutation p.T91I 0.28 deleterious(0.04) possibly_damaging(0.823) TCGA-EE-A2MJ-06 7 117175412 117175412 G A CFTR Silent p.L230L 0.26 TCGA-EE-A2MJ-06 7 120965496 120965496 G A WNT16 5'Flank 0.17 TCGA-EE-A2MJ-06 7 121650433 121650433 C T PTPRZ1 Missense_Mutation p.P445S 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2MJ-06 7 121650827 121650827 G A PTPRZ1 Missense_Mutation p.S576N 0.12 tolerated_low_confidence(0.37) benign(0.002) TCGA-EE-A2MJ-06 7 123097516 123097516 G A IQUB Silent p.S704S 0.08 TCGA-EE-A2MJ-06 7 123302705 123302705 G A LMOD2 Silent p.Q355Q 0.11 TCGA-EE-A2MJ-06 7 126079100 126079100 G A GRM8 3'UTR 0.13 TCGA-EE-A2MJ-06 7 126882983 126882983 G A GRM8 Silent p.L92L 0.16 TCGA-EE-A2MJ-06 7 127953234 127953234 G A RBM28 Silent p.S713S 0.20 TCGA-EE-A2MJ-06 7 128484142 128484142 C T FLNC Missense_Mutation p.S1005L 0.10 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A2MJ-06 7 128488727 128488727 G A FLNC Missense_Mutation p.D1565N 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 7 129079867 129079867 C T STRIP2 Missense_Mutation p.S45F 0.10 tolerated(0.68) benign(0.002) TCGA-EE-A2MJ-06 7 129832510 129832510 C T TMEM209 Missense_Mutation p.D243N 0.30 tolerated(0.47) benign(0.004) TCGA-EE-A2MJ-06 7 131060248 131060248 C T MKLN1 Missense_Mutation p.P55L 0.16 deleterious(0) possibly_damaging(0.603) TCGA-EE-A2MJ-06 7 131878938 131878938 C T PLXNA4 Silent p.Q913Q 0.09 TCGA-EE-A2MJ-06 7 131982903 131982903 C T PLXNA4 Missense_Mutation p.D484N 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 7 133168883 133168883 C T EXOC4 Intron 0.22 TCGA-EE-A2MJ-06 7 133994124 133994124 G A SLC35B4 Missense_Mutation p.P62L 0.36 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MJ-06 7 134222354 134222354 C T AKR1B10 Silent p.L228L 0.13 TCGA-EE-A2MJ-06 7 134346485 134346485 C T BPGM Nonsense_Mutation p.Q76* 0.19 TCGA-EE-A2MJ-06 7 134896311 134896311 G A WDR91 5'Flank 0.20 TCGA-EE-A2MJ-06 7 135366410 135366410 C T SLC13A4 Silent p.V594V 0.25 TCGA-EE-A2MJ-06 7 135377165 135377165 C T SLC13A4 Missense_Mutation p.E376K 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 7 137339494 137339494 G A DGKI Missense_Mutation p.S241L 0.16 tolerated(0.09) possibly_damaging(0.576) TCGA-EE-A2MJ-06 7 137567335 137567335 G A CREB3L2 Missense_Mutation p.P437L 0.17 tolerated(0.25) benign(0.023) TCGA-EE-A2MJ-06 7 138447753 138447753 C T ATP6V0A4 Silent p.L103L 0.23 TCGA-EE-A2MJ-06 7 138764281 138764281 G A ZC3HAV1 Missense_Mutation p.S469F 0.12 tolerated(0.21) possibly_damaging(0.462) TCGA-EE-A2MJ-06 7 138872206 138872206 C T TTC26 Missense_Mutation p.P492S 0.33 tolerated(0.22) benign(0.008) TCGA-EE-A2MJ-06 7 140110793 140110793 C T RAB19 Intron 0.25 TCGA-EE-A2MJ-06 7 141619611 141619611 C T OR9A4 Silent p.F312F 0.30 TCGA-EE-A2MJ-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.24 TCGA-EE-A2MJ-06 7 141730243 141730243 G A MGAM Missense_Mutation p.E435K 0.09 tolerated(0.08) benign(0.228) TCGA-EE-A2MJ-06 7 141762404 141762404 C T MGAM Missense_Mutation p.R1387C 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2MJ-06 7 142180751 142180751 C T TRBV6-5 Silent p.Q36Q 0.08 TCGA-EE-A2MJ-06 7 142423605 142423605 A C TRBV27 Silent p.R87R 0.09 TCGA-EE-A2MJ-06 7 142457318 142457318 C A PRSS1 5'Flank 0.12 TCGA-EE-A2MJ-06 7 142605958 142605958 C T TRPV5 Missense_Mutation p.D638N 0.12 deleterious(0.03) possibly_damaging(0.786) TCGA-EE-A2MJ-06 7 142637500 142637500 G A C7orf34 Silent p.Q90Q 0.08 TCGA-EE-A2MJ-06 7 142650939 142650939 C T KEL Silent p.L343L 0.09 TCGA-EE-A2MJ-06 7 142651411 142651411 C T KEL Missense_Mutation p.G262R 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 7 143018564 143018564 C T CLCN1 Silent p.H180H 0.20 TCGA-EE-A2MJ-06 7 143140656 143140656 C T TAS2R60 Silent p.F37F 0.15 TCGA-EE-A2MJ-06 7 143140983 143140983 C T TAS2R60 Silent p.F146F 0.08 TCGA-EE-A2MJ-06 7 143141184 143141184 G A TAS2R60 Missense_Mutation p.M213I 0.10 tolerated(0.46) benign(0.123) TCGA-EE-A2MJ-06 7 143175741 143175741 C T TAS2R41 Missense_Mutation p.S259F 0.12 tolerated(0.06) benign(0.111) TCGA-EE-A2MJ-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.17 deleterious(0.03) benign(0.003) TCGA-EE-A2MJ-06 7 143748174 143748174 G A OR2A5 Missense_Mutation p.R227K 0.10 tolerated(0.74) benign(0.019) TCGA-EE-A2MJ-06 7 143807483 143807483 G A OR2A2 Missense_Mutation p.E270K 0.16 tolerated(0.46) benign(0.019) TCGA-EE-A2MJ-06 7 144077039 144077039 C T ARHGEF5 Missense_Mutation p.P1562S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 7 146818241 146818241 G A CNTNAP2 Missense_Mutation p.D309N 0.15 tolerated(0.07) possibly_damaging(0.718) TCGA-EE-A2MJ-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.09 deleterious(0) possibly_damaging(0.466) TCGA-EE-A2MJ-06 7 149488614 149488614 C T SSPO RNA 0.43 TCGA-EE-A2MJ-06 7 150069734 150069734 C T REPIN1 Silent p.F525F 0.13 TCGA-EE-A2MJ-06 7 150324938 150324938 C T GIMAP6 Missense_Mutation p.E250K 0.14 tolerated(0.07) benign(0.15) TCGA-EE-A2MJ-06 7 150389491 150389491 G A GIMAP2 Silent p.G39G 0.24 TCGA-EE-A2MJ-06 7 150439687 150439687 G A GIMAP5 Missense_Mutation p.E154K 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 7 150554840 150554840 C T AOC1 Missense_Mutation p.R428W 0.10 deleterious(0) possibly_damaging(0.784) TCGA-EE-A2MJ-06 7 154862641 154862641 C T HTR5A Missense_Mutation p.S11F 0.13 tolerated(0.45) benign(0) TCGA-EE-A2MJ-06 7 154875961 154875961 G A HTR5A Missense_Mutation p.E280K 0.28 deleterious(0.02) possibly_damaging(0.897) TCGA-EE-A2MJ-06 7 1607317 1607317 G A PSMG3 3'UTR 0.11 TCGA-EE-A2MJ-06 7 17833932 17833932 G A SNX13 Intron 0.13 TCGA-EE-A2MJ-06 7 18631231 18631231 C T HDAC9 Missense_Mutation p.H170Y 0.13 tolerated(0.15) possibly_damaging(0.628) TCGA-EE-A2MJ-06 7 18688097 18688097 C T HDAC9 Missense_Mutation p.P420S 0.25 deleterious(0.04) benign(0.396) TCGA-EE-A2MJ-06 7 19765251 19765251 G A TMEM196 Silent p.I115I 0.19 TCGA-EE-A2MJ-06 7 20738148 20738148 C T ABCB5 Missense_Mutation p.S710F 0.14 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MJ-06 7 2108921 2108921 C T MAD1L1 Missense_Mutation p.V376I 0.15 tolerated(0.41) benign(0.02) TCGA-EE-A2MJ-06 7 21657383 21657383 G A DNAH11 Missense_Mutation p.M1419I 0.12 benign(0.012) TCGA-EE-A2MJ-06 7 2472340 2472340 C T CHST12 Silent p.I22I 0.18 TCGA-EE-A2MJ-06 7 2472616 2472616 C T CHST12 Silent p.S114S 0.29 TCGA-EE-A2MJ-06 7 2985562 2985562 C T CARD11 Silent p.K83K 0.09 TCGA-EE-A2MJ-06 7 30876318 30876318 C T FAM188B Missense_Mutation p.P393S 0.15 tolerated(0.15) benign(0.098) TCGA-EE-A2MJ-06 7 31735191 31735191 G A PPP1R17 Missense_Mutation p.R64K 0.10 tolerated_low_confidence(0.16) probably_damaging(0.987) TCGA-EE-A2MJ-06 7 36677509 36677509 C T AOAH Nonsense_Mutation p.W133* 0.15 TCGA-EE-A2MJ-06 7 36917698 36917698 G A ELMO1 Missense_Mutation p.S580L 0.15 deleterious(0) possibly_damaging(0.67) TCGA-EE-A2MJ-06 7 37936490 37936490 G A NME8 Missense_Mutation p.M521I 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2MJ-06 7 38288965 38288965 C T TRGC2 Missense_Mutation p.M70I 0.08 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MJ-06 7 38370155 38370155 G A TRGV8 Missense_Mutation p.A48V 0.13 tolerated(0.33) benign(0.01) TCGA-EE-A2MJ-06 7 38433676 38433676 C T AMPH Missense_Mutation p.G513R 0.13 tolerated(0.53) benign(0.001) TCGA-EE-A2MJ-06 7 38534086 38534086 C T AMPH Missense_Mutation p.E83K 0.09 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MJ-06 7 4152925 4152925 C T SDK1 Nonsense_Mutation p.R1147* 0.17 TCGA-EE-A2MJ-06 7 4215446 4215446 C T SDK1 Missense_Mutation p.S1659L 0.09 tolerated(1) benign(0.001) TCGA-EE-A2MJ-06 7 45014788 45014788 G A MYO1G Silent p.F201F 0.07 TCGA-EE-A2MJ-06 7 48349707 48349707 G A ABCA13 Missense_Mutation p.R3162Q 0.13 benign(0.002) TCGA-EE-A2MJ-06 7 53103816 53103816 G A POM121L12 Nonsense_Mutation p.W151* 0.19 TCGA-EE-A2MJ-06 7 55238901 55238901 G A EGFR Silent p.T638T 0.16 TCGA-EE-A2MJ-06 7 55249165 55249165 C T EGFR Silent p.I821I 0.20 TCGA-EE-A2MJ-06 7 56136241 56136241 C T SUMF2 Missense_Mutation p.P64L 0.41 deleterious_low_confidence(0.05) benign(0.057) TCGA-EE-A2MJ-06 7 5632737 5632737 G A FSCN1 Missense_Mutation p.S57N 0.14 tolerated(0.17) benign(0.116) TCGA-EE-A2MJ-06 7 6026496 6026496 G A PMS2 Missense_Mutation p.H634Y 0.15 deleterious(0.01) benign(0.212) TCGA-EE-A2MJ-06 7 6213339 6213339 G A CYTH3 Nonsense_Mutation p.Q132* 0.26 TCGA-EE-A2MJ-06 7 64452203 64452203 G A ERV3-1 Missense_Mutation p.S401F 0.26 deleterious(0.02) benign(0.336) TCGA-EE-A2MJ-06 7 66103274 66103274 C T KCTD7 Missense_Mutation p.P117S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MJ-06 7 66104169 66104169 C T KCTD7 Missense_Mutation p.H274Y 0.11 tolerated(0.34) benign(0.191) TCGA-EE-A2MJ-06 7 6622969 6622969 C T ZDHHC4 Missense_Mutation p.L135F 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2MJ-06 7 66240307 66240307 C T KCTD7 Silent p.T91T 0.22 TCGA-EE-A2MJ-06 7 71036359 71036359 G A WBSCR17 Missense_Mutation p.G351E 0.25 deleterious(0.01) possibly_damaging(0.766) TCGA-EE-A2MJ-06 7 72400635 72400635 C T POM121 Nonsense_Mutation p.R156* 0.18 TCGA-EE-A2MJ-06 7 72718364 72718364 G A NSUN5 Missense_Mutation p.S266F 0.15 deleterious(0.01) benign(0.043) TCGA-EE-A2MJ-06 7 72745747 72745747 C T FKBP6 Missense_Mutation p.R186C 0.20 tolerated(0.13) benign(0.082) TCGA-EE-A2MJ-06 7 73455557 73455557 C T ELN Missense_Mutation p.L70F 0.21 unknown(0) TCGA-EE-A2MJ-06 7 73526306 73526306 C T LIMK1 Missense_Mutation p.S463F 0.09 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MJ-06 7 73944175 73944175 C T GTF2IRD1 Missense_Mutation p.P433L 0.10 deleterious(0) benign(0.346) TCGA-EE-A2MJ-06 7 73944176 73944176 C T GTF2IRD1 Silent p.P433P 0.10 TCGA-EE-A2MJ-06 7 75192332 75192332 G A HIP1 Silent p.S309S 0.08 TCGA-EE-A2MJ-06 7 75399065 75399065 C T CCL26 Silent p.R77R 0.11 TCGA-EE-A2MJ-06 7 75686735 75686735 C T MDH2 Silent p.L81L 0.24 TCGA-EE-A2MJ-06 7 7680083 7680083 C T RPA3 5'UTR 0.11 TCGA-EE-A2MJ-06 7 77006657 77006657 G A GSAP Silent p.F209F 0.15 TCGA-EE-A2MJ-06 7 81339534 81339534 C T HGF Silent p.T490T 0.25 TCGA-EE-A2MJ-06 7 81600002 81600002 A C CACNA2D1 Silent p.V731V 0.08 TCGA-EE-A2MJ-06 7 81765956 81765956 G A CACNA2D1 Missense_Mutation p.L131F 0.22 tolerated(0.23) benign(0.001) TCGA-EE-A2MJ-06 7 8198255 8198255 T A ICA1 Nonsense_Mutation p.K203* 0.10 TCGA-EE-A2MJ-06 7 82387804 82387804 A C PCLO 3'UTR 0.12 TCGA-EE-A2MJ-06 7 82388013 82388013 C A PCLO Nonsense_Mutation p.G5103* 0.34 TCGA-EE-A2MJ-06 7 825182 825182 C T HEATR2 Silent p.F820F 0.25 TCGA-EE-A2MJ-06 7 825183 825183 C T HEATR2 Missense_Mutation p.P821S 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-EE-A2MJ-06 7 82585486 82585486 C T PCLO Missense_Mutation p.E1595K 0.08 unknown(0) TCGA-EE-A2MJ-06 7 82595698 82595698 G A PCLO Missense_Mutation p.P1136S 0.11 unknown(0) TCGA-EE-A2MJ-06 7 87101970 87101970 C T ABCB4 Silent p.T34T 0.13 TCGA-EE-A2MJ-06 7 87179525 87179525 G A ABCB1 Nonsense_Mutation p.Q438* 0.13 TCGA-EE-A2MJ-06 7 87179798 87179798 G A ABCB1 Nonsense_Mutation p.R404* 0.12 TCGA-EE-A2MJ-06 7 893212 893212 C T SUN1 Missense_Mutation p.P407L 0.14 tolerated(1) benign(0) TCGA-EE-A2MJ-06 7 91632338 91632338 C T AKAP9 Missense_Mutation p.S1036F 0.17 benign(0.005) TCGA-EE-A2MJ-06 7 91864731 91864731 G A KRIT1 Nonsense_Mutation p.Q239* 0.17 TCGA-EE-A2MJ-06 7 92147277 92147277 G A PEX1 Silent p.A184A 0.14 TCGA-EE-A2MJ-06 7 92764617 92764617 C T SAMD9L Missense_Mutation p.R223Q 0.25 deleterious(0) possibly_damaging(0.861) TCGA-EE-A2MJ-06 7 98507905 98507905 C T TRRAP Missense_Mutation p.P526L 0.18 benign(0) TCGA-EE-A2MJ-06 7 99097667 99097667 C T ZNF394 Missense_Mutation p.G17E 0.19 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A2MJ-06 7 99332688 99332688 T C CYP3A7 Missense_Mutation p.E10G 0.15 tolerated(0.08) benign(0.216) TCGA-EE-A2MJ-06 7 99361630 99361630 C T CYP3A4 Missense_Mutation p.D292N 0.14 deleterious(0.01) benign(0.161) TCGA-EE-A2MJ-06 7 99771474 99771474 G A GPC2 Silent p.D292D 0.20 TCGA-EE-A2MJ-06 7 99972025 99972025 C T PILRA Silent p.S141S 0.18 TCGA-EE-A2MJ-06 8 100403879 100403879 C T VPS13B Missense_Mutation p.S1010L 0.16 deleterious(0) possibly_damaging(0.879) TCGA-EE-A2MJ-06 8 102705104 102705104 G A NCALD Silent p.S133S 0.17 TCGA-EE-A2MJ-06 8 102705105 102705105 G A NCALD Missense_Mutation p.S133F 0.17 deleterious(0) possibly_damaging(0.676) TCGA-EE-A2MJ-06 8 104340629 104340629 G A FZD6 Missense_Mutation p.R509Q 0.19 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MJ-06 8 104427654 104427654 C T DCAF13 Missense_Mutation p.P146S 0.11 deleterious_low_confidence(0.03) benign(0) TCGA-EE-A2MJ-06 8 10465121 10465121 C T RP1L1 Missense_Mutation p.G2163S 0.09 unknown(0) TCGA-EE-A2MJ-06 8 10467483 10467483 C T RP1L1 Silent p.E1375E 0.24 TCGA-EE-A2MJ-06 8 105509935 105509935 C T LRP12 Missense_Mutation p.G282E 0.11 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MJ-06 8 110413730 110413730 G A PKHD1L1 Missense_Mutation p.R429K 0.51 tolerated(1) benign(0.004) TCGA-EE-A2MJ-06 8 110431368 110431368 G A PKHD1L1 Silent p.T801T 0.17 TCGA-EE-A2MJ-06 8 110447558 110447558 C T PKHD1L1 Silent p.I1160I 0.10 TCGA-EE-A2MJ-06 8 110457235 110457235 G A PKHD1L1 Missense_Mutation p.E1713K 0.10 tolerated(0.25) possibly_damaging(0.464) TCGA-EE-A2MJ-06 8 110587270 110587270 G A SYBU Silent p.V619V 0.18 TCGA-EE-A2MJ-06 8 113353862 113353862 C T CSMD3 Missense_Mutation p.E2166K 0.12 deleterious(0.02) possibly_damaging(0.876) TCGA-EE-A2MJ-06 8 114031305 114031305 G A CSMD3 Missense_Mutation p.P341S 0.41 tolerated(0.15) benign(0.099) TCGA-EE-A2MJ-06 8 11616017 11616017 G A GATA4 3'UTR 0.14 TCGA-EE-A2MJ-06 8 117768029 117768029 G A EIF3H Missense_Mutation p.S3F 0.22 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EE-A2MJ-06 8 11994871 11994871 G A USP17L2 Missense_Mutation p.H467Y 0.14 deleterious(0) probably_damaging(0.915) TCGA-EE-A2MJ-06 8 122626661 122626661 G A HAS2 Silent p.P449P 0.37 TCGA-EE-A2MJ-06 8 122626662 122626662 G A HAS2 Missense_Mutation p.P449L 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 8 124992757 124992757 G A FER1L6 Silent p.R372R 0.32 TCGA-EE-A2MJ-06 8 125103772 125103772 G A FER1L6 Silent p.Q1500Q 0.20 TCGA-EE-A2MJ-06 8 131916206 131916206 C T ADCY8 Missense_Mutation p.E575K 0.08 tolerated(0.1) benign(0.446) TCGA-EE-A2MJ-06 8 131922025 131922025 C T ADCY8 Silent p.R523R 0.11 TCGA-EE-A2MJ-06 8 131949419 131949419 G A ADCY8 Silent p.L461L 0.25 TCGA-EE-A2MJ-06 8 134145864 134145864 C T TG Silent p.S2716S 0.22 TCGA-EE-A2MJ-06 8 134276895 134276895 C T NDRG1 Missense_Mutation p.E34K 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A2MJ-06 8 142367810 142367810 C T GPR20 Missense_Mutation p.G72R 0.29 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A2MJ-06 8 143569733 143569733 A G BAI1 Missense_Mutation p.I773V 0.28 tolerated(0.05) benign(0.112) TCGA-EE-A2MJ-06 8 143832508 143832508 C T LYPD2 Missense_Mutation p.E47K 0.09 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A2MJ-06 8 144732612 144732612 C G ZNF623 Missense_Mutation p.H190Q 0.12 tolerated(1) possibly_damaging(0.473) TCGA-EE-A2MJ-06 8 144894450 144894450 C T SCRIB Missense_Mutation p.E298K 0.24 possibly_damaging(0.863) TCGA-EE-A2MJ-06 8 144900174 144900174 G A PUF60 Silent p.F225F 0.24 TCGA-EE-A2MJ-06 8 144941146 144941146 G A EPPK1 Silent p.S2092S 0.09 TCGA-EE-A2MJ-06 8 144990957 144990957 G A PLEC Silent p.I4481I 0.26 TCGA-EE-A2MJ-06 8 145640396 145640396 G A SLC39A4 Missense_Mutation p.L256F 0.10 tolerated(0.6) possibly_damaging(0.555) TCGA-EE-A2MJ-06 8 145763161 145763161 G A ARHGAP39 Missense_Mutation p.T853I 0.10 tolerated(0.14) benign(0.066) TCGA-EE-A2MJ-06 8 18662374 18662374 G A PSD3 Missense_Mutation p.H557Y 0.12 tolerated(0.13) benign(0.393) TCGA-EE-A2MJ-06 8 19805839 19805839 C T LPL Silent p.I79I 0.31 TCGA-EE-A2MJ-06 8 20022595 20022595 A G SLC18A1 Silent p.F294F 0.14 TCGA-EE-A2MJ-06 8 2021482 2021482 C T MYOM2 Missense_Mutation p.S341F 0.12 deleterious(0) probably_damaging(0.922) TCGA-EE-A2MJ-06 8 21891733 21891733 C T NPM2 Missense_Mutation p.P160S 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 8 22079004 22079004 C T PHYHIP Silent p.E285E 0.12 TCGA-EE-A2MJ-06 8 24250804 24250804 G A ADAMDEC1 Silent p.Q79Q 0.18 TCGA-EE-A2MJ-06 8 24253266 24253266 G A ADAMDEC1 Missense_Mutation p.E133K 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-EE-A2MJ-06 8 24366104 24366104 G A ADAM7 3'UTR 0.14 TCGA-EE-A2MJ-06 8 27288476 27288476 C T PTK2B Silent p.F251F 0.11 TCGA-EE-A2MJ-06 8 2818669 2818669 G A CSMD1 Silent p.G3232G 0.19 TCGA-EE-A2MJ-06 8 2830730 2830730 G A CSMD1 Silent p.F2944F 0.16 TCGA-EE-A2MJ-06 8 29202954 29202954 G A DUSP4 Intron 0.17 TCGA-EE-A2MJ-06 8 3326276 3326276 C T CSMD1 Missense_Mutation p.D507N 0.30 probably_damaging(0.977) TCGA-EE-A2MJ-06 8 33454892 33454892 A G DUSP26 Silent p.L48L 0.14 TCGA-EE-A2MJ-06 8 35631864 35631864 C T UNC5D Silent p.F842F 0.16 TCGA-EE-A2MJ-06 8 37729768 37729768 C T RAB11FIP1 Missense_Mutation p.G851E 0.12 tolerated_low_confidence(1) benign(0.055) TCGA-EE-A2MJ-06 8 37729769 37729769 C T RAB11FIP1 Missense_Mutation p.G851R 0.12 tolerated_low_confidence(0.64) benign(0.002) TCGA-EE-A2MJ-06 8 37793365 37793365 C T GOT1L1 Silent p.V262V 0.10 TCGA-EE-A2MJ-06 8 38187043 38187043 G A WHSC1L1 Silent p.S478S 0.10 TCGA-EE-A2MJ-06 8 3889456 3889456 G A CSMD1 Missense_Mutation p.S194L 0.21 benign(0.008) TCGA-EE-A2MJ-06 8 39873104 39873104 C T IDO2 Missense_Mutation p.L416F 0.17 deleterious(0) probably_damaging(0.949) TCGA-EE-A2MJ-06 8 41545688 41545688 C T ANK1 Missense_Mutation p.G1456D 0.09 tolerated(0.08) benign(0.119) TCGA-EE-A2MJ-06 8 41563675 41563675 C T ANK1 Missense_Mutation p.D728N 0.17 tolerated(0.13) probably_damaging(0.944) TCGA-EE-A2MJ-06 8 42294758 42294758 G A SLC20A2 Silent p.S424S 0.15 TCGA-EE-A2MJ-06 8 52366118 52366118 G A PXDNL Missense_Mutation p.H404Y 0.11 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 8 53071633 53071633 C T ST18 Missense_Mutation p.R544Q 0.11 tolerated(0.31) possibly_damaging(0.898) TCGA-EE-A2MJ-06 8 53084431 53084431 G A ST18 Silent p.F330F 0.11 TCGA-EE-A2MJ-06 8 55538837 55538837 G A RP1 Missense_Mutation p.D799N 0.15 tolerated(0.22) benign(0.014) TCGA-EE-A2MJ-06 8 55539144 55539144 C T RP1 Missense_Mutation p.P901L 0.30 tolerated(0.09) benign(0.052) TCGA-EE-A2MJ-06 8 55539308 55539308 G A RP1 Missense_Mutation p.D956N 0.12 tolerated(1) benign(0) TCGA-EE-A2MJ-06 8 57078987 57078987 G A PLAG1 Missense_Mutation p.L440F 0.09 tolerated(0.22) benign(0.18) TCGA-EE-A2MJ-06 8 57078988 57078988 G A PLAG1 Silent p.S439S 0.09 TCGA-EE-A2MJ-06 8 57354009 57354009 C T PENK Missense_Mutation p.R209Q 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 8 61765994 61765994 C T CHD7 Missense_Mutation p.S2237F 0.16 probably_damaging(0.982) TCGA-EE-A2MJ-06 8 67925324 67925324 C T PPP1R42 Missense_Mutation p.G102R 0.26 deleterious(0) probably_damaging(0.913) TCGA-EE-A2MJ-06 8 68346387 68346387 G A CPA6 Silent p.F309F 0.34 TCGA-EE-A2MJ-06 8 71619234 71619234 C T XKR9 Silent p.F113F 0.11 TCGA-EE-A2MJ-06 8 73848257 73848257 G A KCNB2 Missense_Mutation p.E223K 0.24 tolerated(0.07) benign(0.008) TCGA-EE-A2MJ-06 8 73848625 73848625 G A KCNB2 Silent p.G345G 0.18 TCGA-EE-A2MJ-06 8 75227223 75227223 G A JPH1 Missense_Mutation p.R338C 0.09 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MJ-06 8 76471254 76471254 C T HNF4G Nonsense_Mutation p.Q359* 0.20 TCGA-EE-A2MJ-06 8 77775788 77775788 G A ZFHX4 Missense_Mutation p.G3280R 0.33 probably_damaging(0.999) TCGA-EE-A2MJ-06 8 82357172 82357172 G A PMP2 Silent p.I42I 0.11 TCGA-EE-A2MJ-06 8 86389390 86389390 C T CA2 Silent p.L183L 0.27 TCGA-EE-A2MJ-06 8 87076634 87076634 C T PSKH2 Missense_Mutation p.E138K 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 8 87393068 87393068 C T WWP1 Missense_Mutation p.P62S 0.12 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MJ-06 8 8748266 8748266 G A MFHAS1 Missense_Mutation p.P768L 0.11 tolerated(0.24) benign(0.048) TCGA-EE-A2MJ-06 8 87641295 87641295 C T CNGB3 Silent p.V444V 0.29 TCGA-EE-A2MJ-06 8 89081608 89081608 G A MMP16 Intron 0.39 TCGA-EE-A2MJ-06 8 91031361 91031361 C G DECR1 Missense_Mutation p.N126K 0.12 tolerated(0.7) benign(0.003) TCGA-EE-A2MJ-06 8 92082501 92082501 G A OTUD6B 5'UTR 0.24 TCGA-EE-A2MJ-06 8 93017381 93017381 C T RUNX1T1 Missense_Mutation p.D246N 0.09 deleterious(0.03) benign(0.349) TCGA-EE-A2MJ-06 8 95539313 95539313 C T KIAA1429 Missense_Mutation p.E387K 0.07 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A2MJ-06 8 95653525 95653525 C T ESRP1 5'UTR 0.14 TCGA-EE-A2MJ-06 8 95674533 95674533 G A ESRP1 Missense_Mutation p.R175Q 0.10 tolerated(0.54) benign(0.007) TCGA-EE-A2MJ-06 8 98288806 98288806 G A TSPYL5 3'UTR 0.25 TCGA-EE-A2MJ-06 9 100617328 100617328 G A FOXE1 3'UTR 0.25 TCGA-EE-A2MJ-06 9 100672574 100672574 G A C9orf156 Missense_Mutation p.P245L 0.10 tolerated(0.07) benign(0.025) TCGA-EE-A2MJ-06 9 104133271 104133271 C T BAAT Missense_Mutation p.R139Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 9 104193085 104193085 C T ALDOB Missense_Mutation p.G29R 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 9 104238679 104238679 G A TMEM246 Silent p.F232F 0.10 TCGA-EE-A2MJ-06 9 104356976 104356976 G A PPP3R2 Silent p.I79I 0.12 TCGA-EE-A2MJ-06 9 104432421 104432421 G A GRIN3A Missense_Mutation p.S758F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 9 104432470 104432470 C T GRIN3A Missense_Mutation p.G742R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 9 107298321 107298321 C T OR13C3 Missense_Mutation p.M258I 0.09 tolerated(1) benign(0.02) TCGA-EE-A2MJ-06 9 107298727 107298727 G A OR13C3 Missense_Mutation p.S123F 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2MJ-06 9 107361157 107361157 C T OR13C5 Missense_Mutation p.E180K 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MJ-06 9 108370212 108370212 G T FKTN Nonsense_Mutation p.E254* 0.16 TCGA-EE-A2MJ-06 9 109686529 109686529 C T ZNF462 Silent p.F112F 0.08 TCGA-EE-A2MJ-06 9 109688455 109688455 C T ZNF462 Silent p.S754S 0.14 TCGA-EE-A2MJ-06 9 112185014 112185014 G A PTPN3 Missense_Mutation p.P374S 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MJ-06 9 113231315 113231315 G A SVEP1 Missense_Mutation p.S1022F 0.19 benign(0.11) TCGA-EE-A2MJ-06 9 114135473 114135473 T C KIAA0368 Missense_Mutation p.N1616S 0.08 tolerated(0.5) benign(0.006) TCGA-EE-A2MJ-06 9 114296571 114296571 C T ZNF483 Missense_Mutation p.S220F 0.12 tolerated(0.08) possibly_damaging(0.485) TCGA-EE-A2MJ-06 9 115336381 115336381 C T KIAA1958 Silent p.T7T 0.18 TCGA-EE-A2MJ-06 9 117475 117475 G A FOXD4 Silent p.F215F 0.10 TCGA-EE-A2MJ-06 9 118950190 118950190 C T PAPPA Silent p.I391I 0.19 TCGA-EE-A2MJ-06 9 119093563 119093563 C T PAPPA Missense_Mutation p.S1063F 0.17 tolerated(0.18) possibly_damaging(0.485) TCGA-EE-A2MJ-06 9 119462032 119462032 C T TRIM32 3'UTR 0.45 TCGA-EE-A2MJ-06 9 119903696 119903696 G A ASTN2 Intron 0.13 TCGA-EE-A2MJ-06 9 120475736 120475736 C T TLR4 Silent p.L444L 0.15 TCGA-EE-A2MJ-06 9 120475982 120475982 A T TLR4 Missense_Mutation p.N526Y 0.10 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MJ-06 9 123308024 123308024 G A CDK5RAP2 Silent p.L117L 0.15 TCGA-EE-A2MJ-06 9 123673706 123673706 G A TRAF1 Missense_Mutation p.S264F 0.19 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2MJ-06 9 123725049 123725049 G A C5 Silent p.P1468P 0.19 TCGA-EE-A2MJ-06 9 125014198 125014198 G A RBM18 Silent p.F56F 0.12 TCGA-EE-A2MJ-06 9 125273119 125273119 C T OR1J2 Silent p.L13L 0.11 TCGA-EE-A2MJ-06 9 125437891 125437891 C T OR1L3 Silent p.L161L 0.08 TCGA-EE-A2MJ-06 9 125437994 125437994 G A OR1L3 Missense_Mutation p.E196K 0.13 tolerated(0.11) benign(0.17) TCGA-EE-A2MJ-06 9 125551761 125551761 G A OR5C1 Missense_Mutation p.D184N 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 9 127262788 127262788 C T NR5A1 Missense_Mutation p.G151S 0.25 tolerated(0.62) benign(0.001) TCGA-EE-A2MJ-06 9 127289121 127289121 G A NR6A1 Missense_Mutation p.H380Y 0.27 deleterious(0.02) possibly_damaging(0.659) TCGA-EE-A2MJ-06 9 130152978 130152978 C T GARNL3 Silent p.P934P 0.11 TCGA-EE-A2MJ-06 9 130507109 130507109 C T SH2D3C Missense_Mutation p.E512K 0.13 tolerated(0.74) possibly_damaging(0.665) TCGA-EE-A2MJ-06 9 131186488 131186488 G A CERCAM Silent p.V166V 0.09 TCGA-EE-A2MJ-06 9 132484531 132484531 C T PRRX2 Missense_Mutation p.P221L 0.20 tolerated(0.2) benign(0.039) TCGA-EE-A2MJ-06 9 134067664 134067664 C T NUP214 Missense_Mutation p.S1215L 0.14 probably_damaging(0.931) TCGA-EE-A2MJ-06 9 135759337 135759337 G A C9orf9 Translation_Start_Site p.M1? 0.10 deleterious(0.02) benign(0.02) TCGA-EE-A2MJ-06 9 135864500 135864500 G A GFI1B Missense_Mutation p.G188E 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 9 135945962 135945962 C T CEL Silent p.F470F 0.09 TCGA-EE-A2MJ-06 9 136234319 136234319 G A SURF4 Silent p.F17F 0.12 TCGA-EE-A2MJ-06 9 136505108 136505108 C T DBH Silent p.L160L 0.14 TCGA-EE-A2MJ-06 9 136573515 136573515 C T SARDH Nonsense_Mutation p.W455* 0.11 TCGA-EE-A2MJ-06 9 136596581 136596581 G A SARDH Missense_Mutation p.S179F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 9 138517988 138517988 C T GLT6D1 Missense_Mutation p.D62N 0.12 tolerated(1) benign(0.009) TCGA-EE-A2MJ-06 9 139270898 139270898 G A SNAPC4 Silent p.S1440S 0.08 TCGA-EE-A2MJ-06 9 139286445 139286445 G A SNAPC4 Silent p.I308I 0.11 TCGA-EE-A2MJ-06 9 139324030 139324030 G A INPP5E 3'UTR 0.17 TCGA-EE-A2MJ-06 9 139324031 139324031 G A INPP5E 3'UTR 0.17 TCGA-EE-A2MJ-06 9 139929401 139929401 A T C9orf139 Missense_Mutation p.E156D 0.09 tolerated_low_confidence(0.06) benign(0.388) TCGA-EE-A2MJ-06 9 140075357 140075357 G A ANAPC2 Missense_Mutation p.S498L 0.09 deleterious(0.04) possibly_damaging(0.771) TCGA-EE-A2MJ-06 9 140110460 140110460 C T NDOR1 Silent p.S515S 0.11 TCGA-EE-A2MJ-06 9 140622819 140622819 C T EHMT1 Missense_Mutation p.P221S 0.10 tolerated_low_confidence(0.19) benign(0.004) TCGA-EE-A2MJ-06 9 140968471 140968471 C T CACNA1B Silent p.L1604L 0.10 TCGA-EE-A2MJ-06 9 14720209 14720209 G A CER1 Missense_Mutation p.S228F 0.16 deleterious(0) possibly_damaging(0.712) TCGA-EE-A2MJ-06 9 14848671 14848671 C T FREM1 Nonsense_Mutation p.W418* 0.13 TCGA-EE-A2MJ-06 9 15486016 15486016 C T PSIP1 Silent p.G148G 0.09 TCGA-EE-A2MJ-06 9 18888042 18888042 G A ADAMTSL1 Splice_Site p.X1488_splice 0.17 TCGA-EE-A2MJ-06 9 2076262 2076262 G A SMARCA2 Missense_Mutation p.E657K 0.09 benign(0.305) TCGA-EE-A2MJ-06 9 21077465 21077465 C T IFNB1 Missense_Mutation p.G135E 0.09 tolerated(1) benign(0.002) TCGA-EE-A2MJ-06 9 21409494 21409494 G A IFNA8 Missense_Mutation p.E107K 0.20 tolerated(0.88) benign(0.002) TCGA-EE-A2MJ-06 9 21837992 21837992 T G MTAP Missense_Mutation p.C145G 0.12 tolerated(0.51) probably_damaging(0.997) TCGA-EE-A2MJ-06 9 26910388 26910388 G A PLAA Silent p.F535F 0.13 TCGA-EE-A2MJ-06 9 27292374 27292374 G A EQTN Intron 0.14 TCGA-EE-A2MJ-06 9 32634114 32634114 G T TAF1L Silent p.P488P 0.11 TCGA-EE-A2MJ-06 9 3270456 3270456 G A RFX3 Silent p.I424I 0.17 TCGA-EE-A2MJ-06 9 33462611 33462611 C T NOL6 3'UTR 0.19 TCGA-EE-A2MJ-06 9 33798433 33798433 C T PRSS3 Intron 0.09 TCGA-EE-A2MJ-06 9 34556355 34556355 C T CNTFR Silent p.L222L 0.14 TCGA-EE-A2MJ-06 9 34972408 34972408 G A KIAA1045 Silent p.R148R 0.08 TCGA-EE-A2MJ-06 9 35560433 35560433 G A RUSC2 Missense_Mutation p.G1266R 0.09 tolerated(0.7) probably_damaging(1) TCGA-EE-A2MJ-06 9 35685461 35685461 G A TPM2 Silent p.I154I 0.16 TCGA-EE-A2MJ-06 9 35853186 35853186 G A TMEM8B Missense_Mutation p.D339N 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MJ-06 9 36169518 36169518 G A CCIN Missense_Mutation p.E7K 0.25 tolerated(0.05) benign(0.055) TCGA-EE-A2MJ-06 9 39085752 39085752 G A CNTNAP3 Silent p.L1141L 0.12 TCGA-EE-A2MJ-06 9 39103800 39103800 G A CNTNAP3 Missense_Mutation p.S826F 0.12 tolerated(0.53) benign(0.33) TCGA-EE-A2MJ-06 9 39361018 39361018 G A SPATA31A1 Missense_Mutation p.E1086K 0.20 tolerated(0.31) benign(0.001) TCGA-EE-A2MJ-06 9 39890269 39890269 G A SPATA31A2 Missense_Mutation p.E1086K 0.26 tolerated(0.32) benign(0) TCGA-EE-A2MJ-06 9 40772423 40772423 G A ZNF658 Missense_Mutation p.S951L 0.10 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MJ-06 9 40774080 40774080 G A ZNF658 Missense_Mutation p.L399F 0.09 deleterious(0.04) benign(0.004) TCGA-EE-A2MJ-06 9 65506468 65506468 C T SPATA31A7 Silent p.R364R 0.22 TCGA-EE-A2MJ-06 9 70177738 70177738 G T FOXD4L5 Missense_Mutation p.D82E 0.09 tolerated_low_confidence(0.2) benign(0.001) TCGA-EE-A2MJ-06 9 71628097 71628097 G A PRKACG Silent p.I304I 0.18 TCGA-EE-A2MJ-06 9 72746444 72746444 G A MAMDC2 Missense_Mutation p.E304K 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 9 73027957 73027957 G A KLF9 Missense_Mutation p.S108F 0.10 deleterious(0.04) benign(0.001) TCGA-EE-A2MJ-06 9 77427271 77427271 C T TRPM6 Missense_Mutation p.G463R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 9 77457121 77457121 C T TRPM6 Silent p.T97T 0.11 TCGA-EE-A2MJ-06 9 78547359 78547359 C T PCSK5 Missense_Mutation p.S86L 0.13 deleterious(0.02) benign(0.039) TCGA-EE-A2MJ-06 9 79323128 79323128 C T PRUNE2 Silent p.G1354G 0.09 TCGA-EE-A2MJ-06 9 79324378 79324378 C T PRUNE2 Missense_Mutation p.E938K 0.11 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MJ-06 9 80144078 80144078 C T GNA14 Silent p.T72T 0.11 TCGA-EE-A2MJ-06 9 80430643 80430643 G A GNAQ Missense_Mutation p.S122F 0.14 deleterious(0.02) benign(0.003) TCGA-EE-A2MJ-06 9 8389358 8389358 C T PTPRD Silent p.R1420R 0.11 TCGA-EE-A2MJ-06 9 84531655 84531655 C T SPATA31D5P RNA 0.12 TCGA-EE-A2MJ-06 9 84531656 84531656 C T SPATA31D5P RNA 0.11 TCGA-EE-A2MJ-06 9 84532106 84532106 C T SPATA31D5P RNA 0.19 TCGA-EE-A2MJ-06 9 84606371 84606371 C T SPATA31D1 Missense_Mutation p.S329F 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MJ-06 9 847141 847141 C T DMRT1 Missense_Mutation p.S179L 0.19 deleterious(0.03) benign(0.297) TCGA-EE-A2MJ-06 9 8499749 8499749 C T PTPRD Silent p.Q740Q 0.11 TCGA-EE-A2MJ-06 9 8524997 8524997 C G PTPRD Missense_Mutation p.G203R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 9 88307707 88307707 G A AGTPBP1 Silent p.I18I 0.10 TCGA-EE-A2MJ-06 9 90387866 90387866 G A CTSL3P RNA 0.11 TCGA-EE-A2MJ-06 9 90535625 90535625 C T SPATA31C1 RNA 0.10 TCGA-EE-A2MJ-06 9 95228677 95228677 C T ASPN Silent p.K188K 0.12 TCGA-EE-A2MJ-06 X 100493979 100493979 G A DRP2 Missense_Mutation p.E150K 0.22 deleterious(0.03) possibly_damaging(0.869) TCGA-EE-A2MJ-06 X 104984617 104984617 G A IL1RAPL2 Silent p.A327A 0.36 TCGA-EE-A2MJ-06 X 105277500 105277500 C T SERPINA7 Silent p.T413T 0.11 TCGA-EE-A2MJ-06 X 106038899 106038899 G A RNF128 Missense_Mutation p.E415K 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 X 106116842 106116842 C T TBC1D8B Missense_Mutation p.H1004Y 0.36 tolerated(0.18) probably_damaging(0.961) TCGA-EE-A2MJ-06 X 106184802 106184802 G A MORC4 Silent p.L907L 0.32 TCGA-EE-A2MJ-06 X 107381365 107381365 C T ATG4A Missense_Mutation p.S253F 0.22 deleterious(0) possibly_damaging(0.832) TCGA-EE-A2MJ-06 X 107978024 107978024 C G IRS4 Silent p.S517S 0.25 TCGA-EE-A2MJ-06 X 109695723 109695723 G A RGAG1 Silent p.T626T 0.10 TCGA-EE-A2MJ-06 X 115593162 115593162 C T CT83 Missense_Mutation p.E30K 0.33 tolerated(0.27) benign(0.013) TCGA-EE-A2MJ-06 X 117900492 117900492 G A IL13RA1 Splice_Site p.X277_splice 0.18 TCGA-EE-A2MJ-06 X 11790277 11790277 C T MSL3 Silent p.V428V 0.27 TCGA-EE-A2MJ-06 X 118148314 118148314 C T LONRF3 Missense_Mutation p.P707S 0.11 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MJ-06 X 123518361 123518361 C T TENM1 Missense_Mutation p.M2140I 0.28 tolerated(0.36) benign(0.003) TCGA-EE-A2MJ-06 X 12627910 12627910 C T FRMPD4 Missense_Mutation p.R77W 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 X 127185093 127185093 C T ACTRT1 Missense_Mutation p.E365K 0.35 deleterious(0.01) benign(0.043) TCGA-EE-A2MJ-06 X 128975808 128975808 G A ZDHHC9 Silent p.F38F 0.21 TCGA-EE-A2MJ-06 X 130219889 130219889 C T ARHGAP36 Silent p.V369V 0.19 TCGA-EE-A2MJ-06 X 130412580 130412580 G A IGSF1 Silent p.I637I 0.17 TCGA-EE-A2MJ-06 X 131212787 131212787 C T FRMD7 Missense_Mutation p.D420N 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2MJ-06 X 132162210 132162210 C T USP26 Silent p.G13G 0.10 TCGA-EE-A2MJ-06 X 134991100 134991100 G A SAGE1 Missense_Mutation p.D507N 0.20 tolerated(0.06) benign(0) TCGA-EE-A2MJ-06 X 135405401 135405401 C T GPR112 Missense_Mutation p.P179S 0.38 tolerated(0.06) benign(0.022) TCGA-EE-A2MJ-06 X 135427103 135427103 C G GPR112 Missense_Mutation p.S413C 0.12 deleterious(0.03) benign(0.182) TCGA-EE-A2MJ-06 X 135427664 135427664 C T GPR112 Missense_Mutation p.S600F 0.25 tolerated(1) benign(0.005) TCGA-EE-A2MJ-06 X 135429806 135429806 C T GPR112 Missense_Mutation p.S1314L 0.35 tolerated(0.95) benign(0) TCGA-EE-A2MJ-06 X 135455070 135455070 G A GPR112 Silent p.R2541R 0.16 TCGA-EE-A2MJ-06 X 135594205 135594205 C T HTATSF1 3'UTR 0.31 TCGA-EE-A2MJ-06 X 138633289 138633289 C T F9 Missense_Mutation p.P197S 0.17 tolerated(0.92) benign(0) TCGA-EE-A2MJ-06 X 141290960 141290960 C T MAGEC2 Missense_Mutation p.E272K 0.28 tolerated(1) benign(0.07) TCGA-EE-A2MJ-06 X 142967308 142967308 C T UBE2NL Missense_Mutation p.H36Y 0.11 tolerated(0.13) benign(0.04) TCGA-EE-A2MJ-06 X 148579787 148579787 C T IDS Missense_Mutation p.D187N 0.43 tolerated(0.55) benign(0.029) TCGA-EE-A2MJ-06 X 148798473 148798473 G A MAGEA11 3'UTR 0.41 TCGA-EE-A2MJ-06 X 150345178 150345178 G A GPR50 5'UTR 0.21 TCGA-EE-A2MJ-06 X 150840204 150840204 C T PASD1 Missense_Mutation p.L464F 0.11 tolerated(0.7) benign(0.011) TCGA-EE-A2MJ-06 X 150869199 150869199 C A PRRG3 Silent p.P130P 0.24 TCGA-EE-A2MJ-06 X 150912516 150912516 C T CNGA2 Missense_Mutation p.S514L 0.20 deleterious(0.03) benign(0.002) TCGA-EE-A2MJ-06 X 151138708 151138708 G A GABRE Silent p.L75L 0.30 TCGA-EE-A2MJ-06 X 151821286 151821286 G A GABRQ Missense_Mutation p.E481K 0.12 tolerated(0.46) benign(0.008) TCGA-EE-A2MJ-06 X 151821633 151821633 C T GABRQ Silent p.F596F 0.29 TCGA-EE-A2MJ-06 X 151899949 151899949 C T MAGEA12 Silent p.V284V 0.14 TCGA-EE-A2MJ-06 X 151900270 151900270 G A MAGEA12 Silent p.I177I 0.15 TCGA-EE-A2MJ-06 X 151900452 151900452 C T MAGEA12 Missense_Mutation p.V117I 0.32 tolerated(0.07) possibly_damaging(0.733) TCGA-EE-A2MJ-06 X 151900453 151900453 C T MAGEA12 Silent p.L116L 0.32 TCGA-EE-A2MJ-06 X 151935336 151935336 G A MAGEA3 Silent p.A277A 0.39 TCGA-EE-A2MJ-06 X 151935675 151935675 G A MAGEA3 Silent p.I164I 0.41 TCGA-EE-A2MJ-06 X 152159167 152159167 G A PNMA5 Nonsense_Mutation p.R326* 0.40 TCGA-EE-A2MJ-06 X 152772344 152772344 G A BGN Missense_Mutation p.E245K 0.25 tolerated(0.08) benign(0.272) TCGA-EE-A2MJ-06 X 152818531 152818531 G A ATP2B3 Missense_Mutation p.G621D 0.19 tolerated(0.58) benign(0.005) TCGA-EE-A2MJ-06 X 152936259 152936259 C T PNCK Silent p.R361R 0.15 TCGA-EE-A2MJ-06 X 153222120 153222120 G A HCFC1 Missense_Mutation p.A864V 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A2MJ-06 X 154115746 154115746 C T F8A1 Missense_Mutation p.P366L 0.08 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MJ-06 X 154159223 154159223 G A F8 Missense_Mutation p.L948F 0.09 tolerated(0.15) benign(0.003) TCGA-EE-A2MJ-06 X 18283813 18283813 G A SCML2 Silent p.V280V 0.23 TCGA-EE-A2MJ-06 X 18969319 18969319 G A PHKA2 Silent p.A119A 0.47 TCGA-EE-A2MJ-06 X 23723117 23723117 G A ACOT9 Missense_Mutation p.S367F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MJ-06 X 23801453 23801453 A C SAT1 5'UTR 0.30 TCGA-EE-A2MJ-06 X 23897068 23897068 G A APOO Silent p.L67L 0.47 TCGA-EE-A2MJ-06 X 24228975 24228975 C T ZFX Nonsense_Mutation p.Q634* 0.40 TCGA-EE-A2MJ-06 X 26157208 26157208 G A MAGEB18 Missense_Mutation p.E36K 0.35 tolerated(0.09) benign(0.117) TCGA-EE-A2MJ-06 X 3019200 3019200 G A ARSF Missense_Mutation p.G347E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MJ-06 X 3240451 3240451 G A MXRA5 Missense_Mutation p.S1092F 0.13 tolerated(0.17) benign(0.004) TCGA-EE-A2MJ-06 X 3241047 3241047 C T MXRA5 Silent p.E893E 0.14 TCGA-EE-A2MJ-06 X 32519904 32519904 G A DMD Missense_Mutation p.S783L 0.50 possibly_damaging(0.838) TCGA-EE-A2MJ-06 X 37028490 37028490 G A FAM47C Silent p.E669E 0.30 TCGA-EE-A2MJ-06 X 37526710 37526710 G A LANCL3 Silent p.T357T 0.41 TCGA-EE-A2MJ-06 X 43634452 43634452 A G MAOB Missense_Mutation p.F402S 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MJ-06 X 43698125 43698125 G A MAOB Missense_Mutation p.H90Y 0.24 tolerated(0.34) benign(0.005) TCGA-EE-A2MJ-06 X 44120372 44120372 C T EFHC2 Silent p.V185V 0.14 TCGA-EE-A2MJ-06 X 48545242 48545242 G A WAS Missense_Mutation p.R211Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 X 54224978 54224978 G A WNK3 Missense_Mutation p.P1728S 0.37 tolerated_low_confidence(0.13) benign(0.042) TCGA-EE-A2MJ-06 X 57405152 57405152 C T FAAH2 Missense_Mutation p.P271S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MJ-06 X 65480099 65480099 G A HEPH Missense_Mutation p.R1119Q 0.21 tolerated(0.44) benign(0.015) TCGA-EE-A2MJ-06 X 66765853 66765853 G A AR Missense_Mutation p.E289K 0.21 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-EE-A2MJ-06 X 69424321 69424321 G A DGAT2L6 Missense_Mutation p.G272R 0.19 tolerated(0.14) benign(0.44) TCGA-EE-A2MJ-06 X 72433980 72433980 T A NAP1L2 Nonsense_Mutation p.K117* 0.32 TCGA-EE-A2MJ-06 X 73961115 73961115 C T KIAA2022 Missense_Mutation p.G1093R 0.20 deleterious(0.03) possibly_damaging(0.883) TCGA-EE-A2MJ-06 X 73963455 73963455 G A KIAA2022 Nonsense_Mutation p.R313* 0.43 TCGA-EE-A2MJ-06 X 76939723 76939723 G A ATRX Missense_Mutation p.S342F 0.40 possibly_damaging(0.766) TCGA-EE-A2MJ-06 X 78216634 78216634 G A P2RY10 Missense_Mutation p.G206E 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MJ-06 X 79932599 79932599 G A BRWD3 Missense_Mutation p.H1640Y 0.24 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EE-A2MJ-06 X 79932630 79932630 G A BRWD3 Silent p.S1629S 0.18 TCGA-EE-A2MJ-06 X 83126513 83126513 C T CYLC1 Missense_Mutation p.P38S 0.21 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A2MJ-06 X 85218957 85218957 G A CHM Silent p.L139L 0.32 TCGA-EE-A2MJ-06 X 85218958 85218958 G C CHM Missense_Mutation p.F138L 0.32 tolerated(0.71) benign(0.003) TCGA-EE-A2MJ-06 X 99917314 99917314 C T SRPX2 Missense_Mutation p.S102L 0.23 tolerated(0.14) benign(0.37) TCGA-EE-A2MJ-06 X 99919867 99919867 G A SRPX2 Missense_Mutation p.S151N 0.25 deleterious(0.01) benign(0.052) TCGA-EE-A2MJ-06 X 99919868 99919868 T G SRPX2 Missense_Mutation p.S151R 0.27 deleterious(0.04) benign(0.002) TCGA-EE-A2MK-06 10 106983007 106983007 G A SORCS3 Silent p.K956K 0.51 TCGA-EE-A2MK-06 10 115971703 115971703 G A TDRD1 Missense_Mutation p.G580E 0.67 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MK-06 10 118711438 118711438 G A KIAA1598 Silent p.L172L 0.74 TCGA-EE-A2MK-06 10 123843518 123843518 G A TACC2 Silent p.L501L 0.75 TCGA-EE-A2MK-06 10 133963531 133963531 G A JAKMIP3 Missense_Mutation p.D665N 0.40 tolerated(0.09) probably_damaging(0.956) TCGA-EE-A2MK-06 10 22880653 22880653 G A PIP4K2A Missense_Mutation p.R133C 0.75 deleterious(0.01) benign(0.168) TCGA-EE-A2MK-06 10 24817015 24817015 G A KIAA1217 Missense_Mutation p.G1017R 0.77 tolerated(0.11) possibly_damaging(0.887) TCGA-EE-A2MK-06 10 25886796 25886796 G A GPR158 Silent p.K747K 0.79 TCGA-EE-A2MK-06 10 27703238 27703238 C T PTCHD3 5'UTR 0.73 TCGA-EE-A2MK-06 10 47086993 47086993 G A NPY4R Silent p.K70K 0.34 TCGA-EE-A2MK-06 10 70404931 70404931 T C TET1 Silent p.H815H 0.68 TCGA-EE-A2MK-06 10 90697976 90697976 C T ACTA2 Missense_Mutation p.E278K 0.69 tolerated_low_confidence(0.08) benign(0.189) TCGA-EE-A2MK-06 10 96796988 96796988 T A CYP2C8 Missense_Mutation p.N457I 0.74 deleterious(0.01) benign(0.177) TCGA-EE-A2MK-06 10 97096854 97096854 G A SORBS1 Silent p.L1021L 0.69 TCGA-EE-A2MK-06 11 103027443 103027443 C T DYNC2H1 Silent p.G1357G 0.35 TCGA-EE-A2MK-06 11 118769362 118769362 A G BCL9L Missense_Mutation p.M1421T 0.50 benign(0.042) TCGA-EE-A2MK-06 11 118886425 118886425 G A CCDC84 3'UTR 0.32 TCGA-EE-A2MK-06 11 118981290 118981290 C T C2CD2L Missense_Mutation p.S157F 0.50 tolerated(0.05) benign(0.017) TCGA-EE-A2MK-06 11 121016263 121016263 G A TECTA Splice_Site p.X1182_splice 0.25 TCGA-EE-A2MK-06 11 123624487 123624487 G A OR6X1 Missense_Mutation p.S247F 0.18 deleterious(0) possibly_damaging(0.756) TCGA-EE-A2MK-06 11 123777295 123777295 C T OR8D4 Missense_Mutation p.R53C 0.23 deleterious(0) benign(0.006) TCGA-EE-A2MK-06 11 123813896 123813896 G A OR6T1 Missense_Mutation p.S217F 0.64 deleterious(0.05) possibly_damaging(0.801) TCGA-EE-A2MK-06 11 128709694 128709694 C T KCNJ1 Missense_Mutation p.V168I 0.51 tolerated(0.29) probably_damaging(0.994) TCGA-EE-A2MK-06 11 133790092 133790092 C T IGSF9B Silent p.R1176R 0.35 TCGA-EE-A2MK-06 11 18472604 18472604 C T LDHC Missense_Mutation p.S310F 0.26 deleterious(0.01) possibly_damaging(0.657) TCGA-EE-A2MK-06 11 18955651 18955651 G A MRGPRX1 Silent p.L227L 0.29 TCGA-EE-A2MK-06 11 20968909 20968909 A T NELL1 Missense_Mutation p.M367L 0.27 tolerated(0.31) benign(0.002) TCGA-EE-A2MK-06 11 31815095 31815095 G A PAX6 Missense_Mutation p.S322F 0.28 deleterious(0) benign(0.316) TCGA-EE-A2MK-06 11 4566960 4566960 C T OR52M1 Silent p.S180S 0.54 TCGA-EE-A2MK-06 11 4870293 4870293 C T OR51S1 Missense_Mutation p.G49E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 11 50003708 50003708 G A OR4C12 Silent p.I110I 0.56 TCGA-EE-A2MK-06 11 5529150 5529150 G A UBQLN3 Missense_Mutation p.P547S 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MK-06 11 55595541 55595541 C T OR5L2 Missense_Mutation p.P283S 0.44 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MK-06 11 56757210 56757210 C T OR5AK2 Silent p.A274A 0.31 TCGA-EE-A2MK-06 11 61959560 61959560 G A SCGB1D1 Missense_Mutation p.E30K 0.63 tolerated(0.06) benign(0.338) TCGA-EE-A2MK-06 11 67163818 67163818 G A RAD9A Silent p.Q273Q 0.48 TCGA-EE-A2MK-06 11 67163819 67163819 G A RAD9A Missense_Mutation p.D274N 0.48 tolerated(0.63) benign(0.001) TCGA-EE-A2MK-06 11 75283030 75283030 C T SERPINH1 Missense_Mutation p.P387S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MK-06 11 76063443 76063443 G A PRKRIR Missense_Mutation p.L251F 0.52 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A2MK-06 11 78412905 78412905 C T TENM4 Missense_Mutation p.E1585K 0.50 deleterious(0) possibly_damaging(0.792) TCGA-EE-A2MK-06 12 117715816 117715816 G A NOS1 Missense_Mutation p.L538F 0.67 tolerated(0.11) possibly_damaging(0.864) TCGA-EE-A2MK-06 12 120990331 120990331 C T RNF10 Silent p.S128S 0.76 TCGA-EE-A2MK-06 12 19511354 19511354 C T PLEKHA5 Missense_Mutation p.P1111S 0.76 tolerated(0.44) benign(0.007) TCGA-EE-A2MK-06 12 2693745 2693745 G A CACNA1C Silent p.K767K 0.67 TCGA-EE-A2MK-06 12 416948 416948 G A KDM5A Missense_Mutation p.S1201F 0.63 deleterious(0.03) possibly_damaging(0.702) TCGA-EE-A2MK-06 12 44913970 44913970 C T NELL2 Missense_Mutation p.E790K 1.00 tolerated(0.62) benign(0.341) TCGA-EE-A2MK-06 12 50044652 50044652 G A FMNL3 Missense_Mutation p.L603F 0.80 tolerated(0.54) probably_damaging(0.997) TCGA-EE-A2MK-06 12 51883516 51883516 G A SLC4A8 Missense_Mutation p.M827I 0.86 tolerated(0.43) benign(0.004) TCGA-EE-A2MK-06 12 51888839 51888839 G A SLC4A8 Silent p.L960L 0.64 TCGA-EE-A2MK-06 12 93131274 93131274 G A PLEKHG7 5'UTR 0.73 TCGA-EE-A2MK-06 12 97051808 97051808 C T C12orf55 Missense_Mutation p.S1750F 0.68 deleterious(0) possibly_damaging(0.736) TCGA-EE-A2MK-06 13 25021281 25021281 G A PARP4 Missense_Mutation p.S1053F 0.15 deleterious(0.02) benign(0.198) TCGA-EE-A2MK-06 13 32907491 32907491 G A BRCA2 Missense_Mutation p.E626K 0.23 tolerated(0.23) benign(0.025) TCGA-EE-A2MK-06 13 37014129 37014130 AT - CCNA1 Frame_Shift_Del p.Y304Sfs*3 0.11 TCGA-EE-A2MK-06 13 37014171 37014171 G A CCNA1 Missense_Mutation p.D317N 0.36 tolerated(0.08) possibly_damaging(0.672) TCGA-EE-A2MK-06 13 46358066 46358066 G A SIAH3 Missense_Mutation p.H88Y 0.17 tolerated(0.91) benign(0.002) TCGA-EE-A2MK-06 14 20389203 20389203 G A OR4K5 Missense_Mutation p.M146I 0.76 tolerated(0.36) benign(0.001) TCGA-EE-A2MK-06 14 51560982 51560982 C T TRIM9 Missense_Mutation p.V226I 0.69 tolerated(0.39) benign(0.005) TCGA-EE-A2MK-06 14 53223298 53223298 C T STYX Missense_Mutation p.P91L 0.73 tolerated(0.09) possibly_damaging(0.751) TCGA-EE-A2MK-06 14 75574130 75574130 G A NEK9 Nonsense_Mutation p.R415* 0.65 TCGA-EE-A2MK-06 14 77987881 77987881 G A SPTLC2 Silent p.F449F 0.64 TCGA-EE-A2MK-06 14 92174546 92174546 G A CATSPERB Silent p.I135I 0.57 TCGA-EE-A2MK-06 14 94754675 94754675 C T SERPINA10 Missense_Mutation p.D314N 0.75 deleterious(0) probably_damaging(0.946) TCGA-EE-A2MK-06 15 24921404 24921404 A C NPAP1 Silent p.P130P 0.71 TCGA-EE-A2MK-06 15 25425552 25425552 C T SNORD115-6 5'Flank 0.89 TCGA-EE-A2MK-06 15 25470404 25470404 C T SNORD115-30 RNA 0.69 TCGA-EE-A2MK-06 15 43494124 43494124 G A EPB42 Nonsense_Mutation p.Q641* 0.79 TCGA-EE-A2MK-06 15 43577045 43577045 T G TGM7 Missense_Mutation p.E324A 0.77 deleterious(0.03) benign(0.134) TCGA-EE-A2MK-06 15 45556157 45556157 C T SLC28A2 Silent p.I175I 0.76 TCGA-EE-A2MK-06 15 63353404 63353404 C T TPM1 Nonsense_Mutation p.R191* 0.83 TCGA-EE-A2MK-06 15 90021159 90021159 G A RHCG Missense_Mutation p.T295I 0.74 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MK-06 16 19452005 19452005 C T TMC5 Silent p.N215N 0.42 TCGA-EE-A2MK-06 16 19492699 19492699 G A TMC5 Missense_Mutation p.G759R 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MK-06 16 21213314 21213314 C T ZP2 Missense_Mutation p.E440K 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MK-06 16 27692825 27692825 T C KIAA0556 Missense_Mutation p.F305S 0.37 tolerated(0.33) benign(0.015) TCGA-EE-A2MK-06 16 2871404 2871404 G A PRSS21 Missense_Mutation p.G248E 0.27 tolerated(0.05) possibly_damaging(0.768) TCGA-EE-A2MK-06 16 32264866 32264866 C T TP53TG3D Silent p.I64I 0.19 TCGA-EE-A2MK-06 16 3297184 3297184 C T MEFV Silent p.L473L 0.43 TCGA-EE-A2MK-06 16 3614281 3614281 G A NLRC3 Silent p.D266D 0.33 TCGA-EE-A2MK-06 16 47644739 47644739 G A PHKB Missense_Mutation p.D456N 0.33 tolerated(0.07) possibly_damaging(0.9) TCGA-EE-A2MK-06 16 49407878 49407878 G A C16orf78 Missense_Mutation p.D10N 0.49 tolerated(0.3) benign(0.012) TCGA-EE-A2MK-06 16 55727956 55727956 C T SLC6A2 Missense_Mutation p.S318F 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MK-06 16 72188326 72188326 C T PMFBP1 Silent p.E66E 0.38 TCGA-EE-A2MK-06 16 81171071 81171071 G A PKD1L2 5'Flank 0.45 TCGA-EE-A2MK-06 16 9858383 9858383 C T GRIN2A Silent p.A1006A 0.47 TCGA-EE-A2MK-06 16 9928072 9928072 G A GRIN2A Missense_Mutation p.S556F 0.40 tolerated(0.06) probably_damaging(0.963) TCGA-EE-A2MK-06 17 10219099 10219099 C T MYH13 Missense_Mutation p.E1299K 0.41 deleterious(0.01) benign(0.192) TCGA-EE-A2MK-06 17 11515152 11515152 G A DNAH9 Intron 0.58 TCGA-EE-A2MK-06 17 11778270 11778270 C T DNAH9 Missense_Mutation p.P3416L 0.25 benign(0.03) TCGA-EE-A2MK-06 17 11837243 11837243 G A DNAH9 Missense_Mutation p.G4115E 0.37 probably_damaging(1) TCGA-EE-A2MK-06 17 11872750 11872750 G C DNAH9 Missense_Mutation p.R4456P 0.48 probably_damaging(1) TCGA-EE-A2MK-06 17 1384095 1384095 G A MYO1C Missense_Mutation p.H238Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MK-06 17 18065952 18065952 C T MYO15A Missense_Mutation p.R3191C 0.27 unknown(0) TCGA-EE-A2MK-06 17 19648410 19648410 G A ALDH3A1 Silent p.A11A 0.53 TCGA-EE-A2MK-06 17 2901634 2901634 G A RAP1GAP2 Silent p.Q388Q 0.49 TCGA-EE-A2MK-06 17 33504046 33504046 C T UNC45B Missense_Mutation p.P681L 0.60 deleterious(0) benign(0.115) TCGA-EE-A2MK-06 17 3680914 3680914 C T ITGAE Silent p.R25R 0.28 TCGA-EE-A2MK-06 17 39023211 39023211 G A KRT12 Silent p.S76S 0.52 TCGA-EE-A2MK-06 17 39296465 39296465 G A KRTAP4-6 Missense_Mutation p.P92L 0.19 deleterious(0) unknown(0) TCGA-EE-A2MK-06 17 41365228 41365228 C T TMEM106A Silent p.F56F 0.53 TCGA-EE-A2MK-06 17 43884400 43884400 C T CRHR1 Missense_Mutation p.P20S 0.55 tolerated_low_confidence(0.26) benign(0.002) TCGA-EE-A2MK-06 17 46691956 46691956 G A HOXB8 Silent p.T37T 0.73 TCGA-EE-A2MK-06 17 48266125 48266125 C T COL1A1 Missense_Mutation p.R1026Q 0.45 unknown(0) TCGA-EE-A2MK-06 17 48602382 48602382 C T MYCBPAP Missense_Mutation p.P637S 0.52 tolerated(0.07) benign(0) TCGA-EE-A2MK-06 17 48741203 48741203 G A ABCC3 Missense_Mutation p.G387D 0.52 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MK-06 17 60767563 60767563 G A MRC2 Silent p.Q1263Q 0.67 TCGA-EE-A2MK-06 17 66878810 66878810 C T ABCA8 Missense_Mutation p.G1213E 0.27 tolerated(1) benign(0.033) TCGA-EE-A2MK-06 17 73100306 73100306 C T SLC16A5 Intron 0.89 TCGA-EE-A2MK-06 17 7810332 7810332 C T CHD3 Missense_Mutation p.P1609L 0.22 possibly_damaging(0.713) TCGA-EE-A2MK-06 18 21712461 21712461 G A TTC39C Missense_Mutation p.G559S 0.60 deleterious(0.04) benign(0.15) TCGA-EE-A2MK-06 18 22807111 22807111 G A ZNF521 Silent p.F257F 0.79 TCGA-EE-A2MK-06 18 28926126 28926126 C T DSG1 Silent p.L689L 0.76 TCGA-EE-A2MK-06 18 3188889 3188889 C T MYOM1 Missense_Mutation p.A210T 0.78 tolerated_low_confidence(0.48) benign(0.018) TCGA-EE-A2MK-06 18 47479700 47479700 G A MYO5B Missense_Mutation p.S561F 0.71 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MK-06 18 50918177 50918177 C T DCC Missense_Mutation p.P870S 0.69 tolerated(0.33) benign(0.001) TCGA-EE-A2MK-06 18 59483343 59483343 G A RNF152 Silent p.G118G 0.77 TCGA-EE-A2MK-06 18 77475254 77475254 C T CTDP1 Silent p.V598V 0.77 TCGA-EE-A2MK-06 19 14271494 14271494 G A LPHN1 Nonsense_Mutation p.Q514* 0.40 TCGA-EE-A2MK-06 19 18249889 18249889 C T MAST3 Silent p.S691S 0.23 TCGA-EE-A2MK-06 19 19257566 19257566 C T MEF2B Silent p.G220G 0.48 TCGA-EE-A2MK-06 19 20216075 20216075 G A ZNF90 Missense_Mutation p.G59E 0.23 tolerated(0.29) benign(0.105) TCGA-EE-A2MK-06 19 22155678 22155678 G A ZNF208 Missense_Mutation p.P720S 0.50 deleterious(0.02) possibly_damaging(0.767) TCGA-EE-A2MK-06 19 2877583 2877583 G A ZNF556 Silent p.G209G 0.20 TCGA-EE-A2MK-06 19 36592210 36592210 C T WDR62 Missense_Mutation p.P988S 0.52 tolerated(0.13) benign(0.287) TCGA-EE-A2MK-06 19 37879696 37879696 C T ZNF527 Missense_Mutation p.H249Y 0.27 deleterious(0.03) benign(0.05) TCGA-EE-A2MK-06 19 38779819 38779819 T C SPINT2 Missense_Mutation p.F127L 0.29 deleterious(0.04) benign(0.067) TCGA-EE-A2MK-06 19 39789305 39789305 G A IFNL1 3'UTR 0.75 TCGA-EE-A2MK-06 19 42482129 42482129 G A ATP1A3 Silent p.I647I 0.28 TCGA-EE-A2MK-06 19 46811951 46811951 G A HIF3A Silent p.T160T 0.47 TCGA-EE-A2MK-06 19 4816790 4816790 G A TICAM1 Nonsense_Mutation p.Q534* 0.55 TCGA-EE-A2MK-06 19 49510598 49510598 C T RUVBL2 Silent p.I145I 0.56 TCGA-EE-A2MK-06 19 49510599 49510599 C T RUVBL2 Nonsense_Mutation p.Q146* 0.56 TCGA-EE-A2MK-06 19 51645996 51645996 C T SIGLEC7 Missense_Mutation p.R124C 0.31 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2MK-06 19 52031506 52031506 C T SIGLEC6 Nonsense_Mutation p.W338* 0.43 TCGA-EE-A2MK-06 19 52941172 52941172 C T ZNF534 Silent p.F166F 0.53 TCGA-EE-A2MK-06 19 53058076 53058076 C T ZNF808 Missense_Mutation p.S636L 0.20 deleterious(0.02) benign(0.307) TCGA-EE-A2MK-06 19 54194157 54194157 G A MIR520A RNA 0.24 TCGA-EE-A2MK-06 19 54314011 54314011 G A NLRP12 Missense_Mutation p.P301L 0.47 tolerated(0.11) possibly_damaging(0.826) TCGA-EE-A2MK-06 19 54759385 54759385 C T LILRB5 Missense_Mutation p.S239N 0.27 tolerated(0.78) benign(0.096) TCGA-EE-A2MK-06 19 55377343 55377343 C T KIR3DL2 Missense_Mutation p.R362C 0.40 tolerated(0.06) benign(0.009) TCGA-EE-A2MK-06 19 56321567 56321567 C T NLRP11 Missense_Mutation p.D137N 0.35 tolerated(0.34) possibly_damaging(0.591) TCGA-EE-A2MK-06 19 57327355 57327355 G A PEG3 Missense_Mutation p.R819C 0.18 tolerated(0.22) benign(0) TCGA-EE-A2MK-06 19 5867302 5867302 C T FUT5 Nonsense_Mutation p.W145* 0.58 TCGA-EE-A2MK-06 19 9014552 9014552 C T MUC16 Missense_Mutation p.R12808K 0.46 possibly_damaging(0.53) TCGA-EE-A2MK-06 19 9046211 9046211 C T MUC16 Missense_Mutation p.G11807D 0.58 benign(0.016) TCGA-EE-A2MK-06 19 9068621 9068621 T A MUC16 Silent p.S6275S 0.49 TCGA-EE-A2MK-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.27 unknown(0) TCGA-EE-A2MK-06 19 9585993 9585993 C T ZNF560 5'UTR 0.59 TCGA-EE-A2MK-06 1 11253759 11253759 G A ANGPTL7 Silent p.G200G 0.82 TCGA-EE-A2MK-06 1 151774583 151774583 G A LINGO4 Missense_Mutation p.L200F 0.25 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A2MK-06 1 152282783 152282785 TTC AT FLG Frame_Shift_Del p.G1526Dfs*180 0.28 TCGA-EE-A2MK-06 1 153043071 153043071 C T SPRR2B 3'UTR 0.42 TCGA-EE-A2MK-06 1 154987748 154987748 C T ZBTB7B Silent p.P238P 0.49 TCGA-EE-A2MK-06 1 155735878 155735878 G A GON4L Missense_Mutation p.P1129L 0.14 tolerated_low_confidence(0.56) benign(0.001) TCGA-EE-A2MK-06 1 156639485 156639485 C T NES Missense_Mutation p.E1499K 0.48 deleterious(0) possibly_damaging(0.848) TCGA-EE-A2MK-06 1 158549379 158549379 T C OR10X1 Missense_Mutation p.K104R 0.57 tolerated(0.53) benign(0.01) TCGA-EE-A2MK-06 1 16464803 16464803 C T EPHA2 Missense_Mutation p.A316T 0.82 tolerated(0.06) possibly_damaging(0.739) TCGA-EE-A2MK-06 1 16464804 16464804 C T EPHA2 Silent p.R315R 0.82 TCGA-EE-A2MK-06 1 170508353 170508353 C T GORAB Missense_Mutation p.P47S 0.77 tolerated(0.38) benign(0.023) TCGA-EE-A2MK-06 1 171083218 171083218 A C FMO3 Missense_Mutation p.K300T 0.62 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A2MK-06 1 179815106 179815106 C A TOR1AIP2 3'UTR 0.60 TCGA-EE-A2MK-06 1 181689945 181689945 C T CACNA1E Missense_Mutation p.S637L 0.41 tolerated(0.09) possibly_damaging(0.651) TCGA-EE-A2MK-06 1 200880585 200880585 G A C1orf106 Missense_Mutation p.D322N 0.51 tolerated(0.12) benign(0.411) TCGA-EE-A2MK-06 1 20442053 20442053 C T PLA2G2D Missense_Mutation p.S80N 0.72 tolerated(0.6) benign(0) TCGA-EE-A2MK-06 1 213341253 213341253 C T RPS6KC1 Silent p.Y296Y 0.42 TCGA-EE-A2MK-06 1 213341254 213341254 C T RPS6KC1 Missense_Mutation p.L297F 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MK-06 1 223568027 223568027 G A C1orf65 Missense_Mutation p.A404T 0.36 tolerated(0.12) benign(0.13) TCGA-EE-A2MK-06 1 226175730 226175730 G A SDE2 Missense_Mutation p.P334L 0.60 tolerated(0.23) benign(0.001) TCGA-EE-A2MK-06 1 235294922 235294922 A T RBM34 3'UTR 0.36 TCGA-EE-A2MK-06 1 236187465 236187465 C T NID1 Missense_Mutation p.G678E 0.51 deleterious(0.03) possibly_damaging(0.707) TCGA-EE-A2MK-06 1 238051726 238051726 C T ZP4 Missense_Mutation p.G162E 0.79 tolerated(0.16) benign(0.06) TCGA-EE-A2MK-06 1 33138102 33138102 C T RBBP4 Missense_Mutation p.R340C 0.78 deleterious(0.03) possibly_damaging(0.483) TCGA-EE-A2MK-06 1 33960324 33960324 T A ZSCAN20 Missense_Mutation p.Y794N 0.78 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MK-06 1 34204909 34204909 G A CSMD2 Missense_Mutation p.P694S 0.76 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 1 38463446 38463446 A G FHL3 Missense_Mutation p.F200L 0.69 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A2MK-06 1 40205917 40205917 C T PPIE Missense_Mutation p.P38S 0.59 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MK-06 1 41540948 41540948 G A SCMH1 Silent p.S297S 0.76 TCGA-EE-A2MK-06 1 47401203 47401203 C T CYP4A11 Silent p.Q209Q 0.81 TCGA-EE-A2MK-06 1 57171824 57171824 G A PRKAA2 Silent p.V451V 0.56 TCGA-EE-A2MK-06 1 66713297 66713297 C T PDE4B Missense_Mutation p.P146S 0.77 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MK-06 20 2293587 2293587 G A TGM3 Missense_Mutation p.R195K 0.24 tolerated(0.61) benign(0.001) TCGA-EE-A2MK-06 20 279320 279320 C T ZCCHC3 Missense_Mutation p.P365S 0.32 tolerated(0.17) benign(0.015) TCGA-EE-A2MK-06 20 30662496 30662496 G A HCK Missense_Mutation p.A134T 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MK-06 20 33584489 33584489 A T MYH7B Missense_Mutation p.D1107V 0.21 probably_damaging(0.999) TCGA-EE-A2MK-06 20 35173374 35173374 C T MYL9 Silent p.S29S 0.29 TCGA-EE-A2MK-06 20 37353665 37353665 G A SLC32A1 Missense_Mutation p.D100N 0.25 tolerated(0.28) benign(0.005) TCGA-EE-A2MK-06 20 3944649 3944649 G A RNF24 Missense_Mutation p.P27S 0.28 tolerated_low_confidence(0.11) benign(0.118) TCGA-EE-A2MK-06 20 42907951 42907951 G A GDAP1L1 3'UTR 0.49 TCGA-EE-A2MK-06 20 44589153 44589153 G A ZNF335 Silent p.S598S 0.26 TCGA-EE-A2MK-06 20 45242373 45242373 G A SLC13A3 Intron 0.15 TCGA-EE-A2MK-06 20 47695115 47695115 C T CSE1L Missense_Mutation p.L480F 0.39 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MK-06 20 5282770 5282770 C T PROKR2 Silent p.R357R 0.51 TCGA-EE-A2MK-06 20 5283124 5283124 C T PROKR2 Missense_Mutation p.M239I 0.51 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MK-06 20 8782784 8782784 C T PLCB1 Intron 0.77 TCGA-EE-A2MK-06 21 15870784 15870784 C T SAMSN1 Missense_Mutation p.E368K 0.25 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MK-06 21 27071055 27071055 G A JAM2 Missense_Mutation p.R154Q 0.44 deleterious(0.03) possibly_damaging(0.674) TCGA-EE-A2MK-06 21 27074551 27074551 C T JAM2 Missense_Mutation p.R223C 0.19 deleterious(0) possibly_damaging(0.84) TCGA-EE-A2MK-06 21 39212999 39212999 C T KCNJ6 5'UTR 0.28 TCGA-EE-A2MK-06 21 39671500 39671500 C T KCNJ15 Missense_Mutation p.P106L 0.29 tolerated(0.05) possibly_damaging(0.783) TCGA-EE-A2MK-06 21 41414575 41414575 G A DSCAM Silent p.S1803S 0.41 TCGA-EE-A2MK-06 21 42080452 42080452 C T DSCAM Missense_Mutation p.D97N 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MK-06 21 42080678 42080678 G A DSCAM Silent p.H21H 0.32 TCGA-EE-A2MK-06 21 45802643 45802643 C T TRPM2 Missense_Mutation p.R420W 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MK-06 21 47810612 47810612 C T PCNT Missense_Mutation p.R1290C 0.23 possibly_damaging(0.876) TCGA-EE-A2MK-06 22 19776084 19776084 C T GNB1L 3'UTR 0.61 TCGA-EE-A2MK-06 22 20097562 20097562 G A DGCR8 Silent p.K751K 0.19 TCGA-EE-A2MK-06 22 29750755 29750755 C T AP1B1 Silent p.L274L 0.29 TCGA-EE-A2MK-06 22 30688467 30688467 G A TBC1D10A Missense_Mutation p.A482V 0.55 tolerated_low_confidence(0.47) benign(0) TCGA-EE-A2MK-06 22 31740335 31740335 A G PATZ1 Silent p.C418C 0.21 TCGA-EE-A2MK-06 22 37771217 37771217 C T ELFN2 Missense_Mutation p.E120K 0.23 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MK-06 22 39918609 39918609 T C ATF4 3'UTR 0.71 TCGA-EE-A2MK-06 22 41833051 41833051 G A TOB2 Missense_Mutation p.S100F 0.52 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MK-06 22 45802514 45802514 G A SMC1B Missense_Mutation p.P148S 0.44 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A2MK-06 22 46658002 46658002 C T PKDREJ Silent p.L406L 0.49 TCGA-EE-A2MK-06 2 103340158 103340158 C T MFSD9 Splice_Site p.X213_splice 0.80 TCGA-EE-A2MK-06 2 131519662 131519662 G A AMER3 Missense_Mutation p.G6E 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 2 145157015 145157015 G A ZEB2 Missense_Mutation p.P580L 0.72 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2MK-06 2 171705804 171705804 G A GAD1 Nonsense_Mutation p.W376* 0.78 TCGA-EE-A2MK-06 2 179430378 179430378 C T TTN Nonsense_Mutation p.W26827* 0.82 TCGA-EE-A2MK-06 2 179526499 179526499 G A TTN Silent p.V12424V 0.56 TCGA-EE-A2MK-06 2 196749357 196749357 G A DNAH7 Silent p.V1905V 0.72 TCGA-EE-A2MK-06 2 211542674 211542674 C T CPS1 Missense_Mutation p.H1496Y 0.74 tolerated(0.05) probably_damaging(0.966) TCGA-EE-A2MK-06 2 212248745 212248745 C T ERBB4 Silent p.R1174R 0.79 TCGA-EE-A2MK-06 2 26712547 26712547 G A OTOF Missense_Mutation p.S320L 0.77 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MK-06 2 77746445 77746445 C T LRRTM4 Missense_Mutation p.D184N 0.64 deleterious(0) possibly_damaging(0.761) TCGA-EE-A2MK-06 3 107779599 107779599 G A CD47 Silent p.F197F 0.30 TCGA-EE-A2MK-06 3 109019282 109019282 C T DPPA2 Silent p.R285R 0.28 TCGA-EE-A2MK-06 3 121251895 121251895 G A POLQ Missense_Mutation p.S301F 0.21 tolerated(0.07) possibly_damaging(0.862) TCGA-EE-A2MK-06 3 130748514 130748514 T A NEK11 5'UTR 0.55 TCGA-EE-A2MK-06 3 141535598 141535598 G A GRK7 Silent p.T456T 0.23 TCGA-EE-A2MK-06 3 155206578 155206578 C T PLCH1 Missense_Mutation p.E792K 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 3 160939835 160939835 C T NMD3 Missense_Mutation p.P12S 0.46 tolerated(0.75) benign(0.002) TCGA-EE-A2MK-06 3 184086028 184086028 T A POLR2H Missense_Mutation p.H133Q 0.56 tolerated(0.94) benign(0.02) TCGA-EE-A2MK-06 3 184295460 184295460 C T EPHB3 Silent p.A498A 0.28 TCGA-EE-A2MK-06 3 189455644 189455644 G A TP63 Missense_Mutation p.D60N 0.21 tolerated(0.62) benign(0.26) TCGA-EE-A2MK-06 3 38347901 38347901 C T SLC22A14 Silent p.F128F 0.50 TCGA-EE-A2MK-06 3 38591868 38591868 C T SCN5A Missense_Mutation p.E1999K 0.31 tolerated(0.12) possibly_damaging(0.539) TCGA-EE-A2MK-06 3 38793763 38793763 C T SCN10A Missense_Mutation p.E568K 0.38 tolerated(0.86) benign(0.001) TCGA-EE-A2MK-06 3 38938701 38938701 A G SCN11A Silent p.L680L 0.63 TCGA-EE-A2MK-06 3 45127476 45127476 A C CDCP1 Missense_Mutation p.F722C 0.56 deleterious(0) benign(0.082) TCGA-EE-A2MK-06 3 45807066 45807066 C T SLC6A20 Silent p.K422K 0.60 TCGA-EE-A2MK-06 3 45817403 45817403 G A SLC6A20 Silent p.S144S 0.25 TCGA-EE-A2MK-06 3 46718410 46718410 C T ALS2CL Silent p.E620E 0.49 TCGA-EE-A2MK-06 3 49689898 49689898 C T BSN Missense_Mutation p.S970F 0.51 benign(0.184) TCGA-EE-A2MK-06 3 49690200 49690200 G A BSN Missense_Mutation p.A1071T 0.22 unknown(0) TCGA-EE-A2MK-06 3 52802597 52802597 G A NEK4 Silent p.L39L 0.48 TCGA-EE-A2MK-06 3 58555568 58555568 C T FAM107A Missense_Mutation p.R7K 0.45 tolerated_low_confidence(0.06) benign(0.067) TCGA-EE-A2MK-06 3 93611809 93611809 C T PROS1 Missense_Mutation p.G375S 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MK-06 3 97806419 97806419 C T OR5AC2 Missense_Mutation p.P135S 0.25 tolerated(0.09) benign(0.022) TCGA-EE-A2MK-06 3 9799267 9799267 C T CAMK1 Missense_Mutation p.E357K 0.50 tolerated(0.08) benign(0.004) TCGA-EE-A2MK-06 4 100234992 100234992 G A ADH1B Missense_Mutation p.R272W 0.25 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A2MK-06 4 114280158 114280158 G A ANK2 Missense_Mutation p.E3462K 0.75 possibly_damaging(0.492) TCGA-EE-A2MK-06 4 114823685 114823685 G A ARSJ Silent p.I515I 0.20 TCGA-EE-A2MK-06 4 126240396 126240396 G A FAT4 Missense_Mutation p.E944K 0.60 probably_damaging(0.981) TCGA-EE-A2MK-06 4 156696117 156696117 C T GUCY1B3 Intron 0.27 TCGA-EE-A2MK-06 4 158284155 158284155 G A GRIA2 Missense_Mutation p.E871K 0.66 deleterious_low_confidence(0) benign(0.164) TCGA-EE-A2MK-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.43 TCGA-EE-A2MK-06 4 188924639 188924639 C T ZFP42 Silent p.F226F 0.28 TCGA-EE-A2MK-06 4 38829302 38829302 A C TLR6 Missense_Mutation p.L598W 0.55 deleterious(0.05) benign(0.087) TCGA-EE-A2MK-06 4 39881417 39881417 C T PDS5A Silent p.G641G 0.37 TCGA-EE-A2MK-06 4 420497 420497 G A ABCA11P RNA 0.53 TCGA-EE-A2MK-06 4 48525101 48525101 G A FRYL Silent p.F2446F 0.61 TCGA-EE-A2MK-06 4 5747008 5747008 C T EVC Silent p.Y293Y 0.54 TCGA-EE-A2MK-06 4 6864330 6864330 G T KIAA0232 Missense_Mutation p.D741Y 0.19 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-EE-A2MK-06 4 73169642 73169642 T A ADAMTS3 Missense_Mutation p.I806F 0.54 deleterious(0.01) possibly_damaging(0.482) TCGA-EE-A2MK-06 4 74447996 74447996 G A RASSF6 Silent p.F225F 0.24 TCGA-EE-A2MK-06 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.39 tolerated(0.18) possibly_damaging(0.643) TCGA-EE-A2MK-06 4 94316791 94316791 G A GRID2 Missense_Mutation p.G427R 0.50 deleterious(0.04) possibly_damaging(0.873) TCGA-EE-A2MK-06 5 128990052 128990052 C T ADAMTS19 Silent p.L738L 0.62 TCGA-EE-A2MK-06 5 134223431 134223431 C T TXNDC15 Silent p.H50H 0.14 TCGA-EE-A2MK-06 5 136324265 136324265 C T SPOCK1 Missense_Mutation p.M258I 0.22 deleterious(0.02) benign(0.268) TCGA-EE-A2MK-06 5 140203664 140203664 C T PCDHA5 Silent p.L768L 0.25 TCGA-EE-A2MK-06 5 140255646 140255646 C T PCDHA12 Missense_Mutation p.R197W 0.29 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-EE-A2MK-06 5 140481216 140481216 C T PCDHB3 Missense_Mutation p.S328F 0.27 tolerated_low_confidence(0.07) benign(0.193) TCGA-EE-A2MK-06 5 140531956 140531956 C T PCDHB6 Silent p.F706F 0.51 TCGA-EE-A2MK-06 5 140869034 140869034 C T PCDHGC5 Missense_Mutation p.S76F 0.49 tolerated(0.06) possibly_damaging(0.694) TCGA-EE-A2MK-06 5 145969654 145969654 C T PPP2R2B Silent p.G399G 0.57 TCGA-EE-A2MK-06 5 153077630 153077630 G A GRIA1 Silent p.K397K 0.76 TCGA-EE-A2MK-06 5 154291305 154291305 G A GEMIN5 Missense_Mutation p.H717Y 0.28 deleterious(0.05) benign(0.013) TCGA-EE-A2MK-06 5 154397127 154397127 T C KIF4B 3'UTR 0.32 TCGA-EE-A2MK-06 5 176301536 176301536 C T UNC5A Silent p.F449F 0.49 TCGA-EE-A2MK-06 5 32126608 32126608 G A GOLPH3 Missense_Mutation p.P203S 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MK-06 5 33751618 33751618 G A ADAMTS12 Silent p.F175F 0.48 TCGA-EE-A2MK-06 5 36116632 36116632 G A LMBRD2 Missense_Mutation p.R456C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 5 5232487 5232487 C G ADAMTS16 Missense_Mutation p.R570G 0.34 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MK-06 5 89979463 89979463 C T GPR98 Missense_Mutation p.P1909S 0.36 probably_damaging(0.968) TCGA-EE-A2MK-06 5 94727130 94727130 G A FAM81B Missense_Mutation p.E13K 0.31 deleterious_low_confidence(0.02) benign(0) TCGA-EE-A2MK-06 6 102372574 102372574 T C GRIK2 Missense_Mutation p.V616A 0.55 deleterious(0) benign(0.411) TCGA-EE-A2MK-06 6 152826510 152826510 C T SYNE1 Missense_Mutation p.D202N 0.41 probably_damaging(0.992) TCGA-EE-A2MK-06 6 154412478 154412478 C T OPRM1 Silent p.F438F 0.73 TCGA-EE-A2MK-06 6 159462447 159462447 T C TAGAP Missense_Mutation p.N139S 0.61 tolerated(0.07) possibly_damaging(0.654) TCGA-EE-A2MK-06 6 169640626 169640626 G C THBS2 Nonsense_Mutation p.S318* 0.57 TCGA-EE-A2MK-06 6 24653343 24653343 G A TDP2 Silent p.S225S 0.16 TCGA-EE-A2MK-06 6 25726520 25726520 A T HIST1H2AA Missense_Mutation p.I79N 0.63 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-EE-A2MK-06 6 27879876 27879876 G A OR2B2 Silent p.T74T 0.28 TCGA-EE-A2MK-06 6 29080273 29080273 C T OR2J3 Silent p.L202L 0.39 TCGA-EE-A2MK-06 6 30079500 30079500 G A TRIM31 Silent p.I146I 0.70 TCGA-EE-A2MK-06 6 3287256 3287256 G A SLC22A23 Silent p.L461L 0.22 TCGA-EE-A2MK-06 6 35212587 35212587 G A SCUBE3 Silent p.K800K 0.14 TCGA-EE-A2MK-06 6 36982814 36982814 G A FGD2 Silent p.L343L 0.43 TCGA-EE-A2MK-06 6 38828393 38828393 C T DNAH8 Missense_Mutation p.P1823L 0.13 probably_damaging(1) TCGA-EE-A2MK-06 6 42890785 42890785 C T PTCRA Missense_Mutation p.P27S 0.32 tolerated(0.05) probably_damaging(1) TCGA-EE-A2MK-06 6 43399895 43399895 C T ABCC10 Silent p.I59I 0.33 TCGA-EE-A2MK-06 6 46190860 46190860 C T RCAN2 3'UTR 0.68 TCGA-EE-A2MK-06 6 46761430 46761430 A T MEP1A Missense_Mutation p.K41M 0.26 deleterious(0) possibly_damaging(0.765) TCGA-EE-A2MK-06 6 54735239 54735239 G A FAM83B Silent p.L65L 0.31 TCGA-EE-A2MK-06 6 69785900 69785900 C T BAI3 Missense_Mutation p.P817L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MK-06 6 7904916 7904916 G A TXNDC5 Silent p.L102L 0.17 TCGA-EE-A2MK-06 6 7904917 7904917 G A TXNDC5 Silent p.D101D 0.19 TCGA-EE-A2MK-06 7 102937950 102937950 G A PMPCB Missense_Mutation p.R15Q 0.72 tolerated(0.18) unknown(0) TCGA-EE-A2MK-06 7 107415259 107415259 C T SLC26A3 Missense_Mutation p.R579Q 0.70 tolerated(0.43) benign(0.168) TCGA-EE-A2MK-06 7 122635000 122635000 G A TAS2R16 Missense_Mutation p.A230V 0.65 tolerated(0.07) benign(0.129) TCGA-EE-A2MK-06 7 123256545 123256545 G A ASB15 Silent p.L96L 0.16 TCGA-EE-A2MK-06 7 123264737 123264737 G A ASB15 Missense_Mutation p.R189Q 0.19 tolerated(0.33) benign(0.2) TCGA-EE-A2MK-06 7 123516965 123516965 A G HYAL4 Missense_Mutation p.N401S 0.17 tolerated(0.27) benign(0.026) TCGA-EE-A2MK-06 7 126883108 126883108 G A GRM8 Missense_Mutation p.L51F 0.17 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MK-06 7 128490469 128490469 C T FLNC Missense_Mutation p.P1777L 0.16 tolerated(0.34) benign(0.013) TCGA-EE-A2MK-06 7 129668810 129668810 G A ZC3HC1 Missense_Mutation p.R185C 0.66 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MK-06 7 129736814 129736814 C T KLHDC10 Missense_Mutation p.P74S 0.20 tolerated(0.18) benign(0.016) TCGA-EE-A2MK-06 7 137150748 137150748 C T DGKI Missense_Mutation p.D848N 0.13 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2MK-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.67 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MK-06 7 141754560 141754560 G A MGAM Missense_Mutation p.D1056N 0.73 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A2MK-06 7 142250914 142250914 C T TRBV6-4 Missense_Mutation p.D45N 0.68 tolerated(0.38) benign(0.046) TCGA-EE-A2MK-06 7 142569731 142569731 C T TRPV6 Missense_Mutation p.R636K 0.68 tolerated(0.14) benign(0.005) TCGA-EE-A2MK-06 7 142983984 142983984 C T TMEM139 3'UTR 0.42 TCGA-EE-A2MK-06 7 143747860 143747860 G A OR2A5 Silent p.R122R 0.67 TCGA-EE-A2MK-06 7 148801551 148801551 G A ZNF425 Missense_Mutation p.P471L 0.17 tolerated(0.18) benign(0.071) TCGA-EE-A2MK-06 7 149129548 149129548 G A ZNF777 Silent p.P605P 0.22 TCGA-EE-A2MK-06 7 150697640 150697640 G A NOS3 Missense_Mutation p.D396N 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MK-06 7 23749835 23749835 C T STK31 5'UTR 0.10 TCGA-EE-A2MK-06 7 31146119 31146119 G A ADCYAP1R1 Missense_Mutation p.E438K 0.64 deleterious(0) possibly_damaging(0.507) TCGA-EE-A2MK-06 7 47384617 47384617 G A TNS3 Missense_Mutation p.P824L 0.17 tolerated(0.24) benign(0.138) TCGA-EE-A2MK-06 7 48146546 48146546 C T UPP1 Silent p.V171V 0.18 TCGA-EE-A2MK-06 7 5643196 5643196 G C FSCN1 Missense_Mutation p.K353N 0.11 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MK-06 7 79818515 79818515 T C GNAI1 Silent p.L91L 0.47 TCGA-EE-A2MK-06 7 99564768 99564768 C T AZGP1 Missense_Mutation p.G252E 0.16 deleterious(0.04) probably_damaging(0.982) TCGA-EE-A2MK-06 8 105503038 105503038 G A LRP12 Missense_Mutation p.P815S 0.15 tolerated_low_confidence(0.42) benign(0.015) TCGA-EE-A2MK-06 8 110397839 110397839 G A PKHD1L1 Silent p.G183G 0.40 TCGA-EE-A2MK-06 8 110655054 110655054 G A SYBU Silent p.A44A 0.20 TCGA-EE-A2MK-06 8 110980573 110980573 C T KCNV1 Missense_Mutation p.G416E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 8 118185012 118185012 G A SLC30A8 3'UTR 0.42 TCGA-EE-A2MK-06 8 140631332 140631332 G C KCNK9 Missense_Mutation p.H98Q 0.18 deleterious(0) probably_damaging(0.949) TCGA-EE-A2MK-06 8 145699638 145699638 A T FOXH1 Missense_Mutation p.S361T 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.515) TCGA-EE-A2MK-06 8 30209743 30209743 G A TUBBP1 RNA 0.27 TCGA-EE-A2MK-06 8 3046514 3046514 G A CSMD1 Silent p.F1806F 0.55 TCGA-EE-A2MK-06 8 30704622 30704622 A G TEX15 Silent p.L638L 0.20 TCGA-EE-A2MK-06 8 68536417 68536417 T C CPA6 Silent p.Q62Q 0.29 TCGA-EE-A2MK-06 8 95900157 95900157 C T CCNE2 Missense_Mutation p.E200K 0.53 deleterious(0) probably_damaging(0.942) TCGA-EE-A2MK-06 8 99101579 99101579 G A C8orf47 Missense_Mutation p.E112K 0.25 tolerated(0.06) benign(0.08) TCGA-EE-A2MK-06 9 1056230 1056230 C T DMRT2 Missense_Mutation p.P215S 0.74 deleterious(0.03) benign(0.03) TCGA-EE-A2MK-06 9 107266729 107266729 C T OR13F1 Silent p.F62F 0.59 TCGA-EE-A2MK-06 9 117497 117497 C T FOXD4 Missense_Mutation p.G208E 0.55 deleterious(0.02) possibly_damaging(0.87) TCGA-EE-A2MK-06 9 117498 117498 C T FOXD4 Missense_Mutation p.G208R 0.55 tolerated(0.05) benign(0.142) TCGA-EE-A2MK-06 9 120474949 120474949 C T TLR4 Silent p.D181D 0.70 TCGA-EE-A2MK-06 9 125330655 125330655 G A OR1L8 Silent p.I34I 0.58 TCGA-EE-A2MK-06 9 130476437 130476437 G A PTRH1 Missense_Mutation p.T196I 0.80 tolerated(0.14) benign(0.285) TCGA-EE-A2MK-06 9 131115808 131115808 C T SLC27A4 Missense_Mutation p.P438S 0.79 tolerated(0.25) benign(0.259) TCGA-EE-A2MK-06 9 26925929 26925929 G A PLAA Silent p.L255L 0.74 TCGA-EE-A2MK-06 9 32630827 32630827 C A TAF1L Missense_Mutation p.R1584L 0.34 tolerated(0.06) possibly_damaging(0.599) TCGA-EE-A2MK-06 9 35091877 35091877 C A PIGO Missense_Mutation p.W669C 0.82 tolerated(0.18) probably_damaging(0.912) TCGA-EE-A2MK-06 9 37356868 37356868 A G ZCCHC7 Missense_Mutation p.K412R 0.72 tolerated(0.12) benign(0.059) TCGA-EE-A2MK-06 9 43815967 43815967 C T CNTNAP3B Missense_Mutation p.L241F 0.35 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2MK-06 9 74828861 74828861 C T GDA Missense_Mutation p.P178S 0.72 tolerated(0.17) benign(0.06) TCGA-EE-A2MK-06 X 100496794 100496794 C T DRP2 Missense_Mutation p.L233F 0.34 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A2MK-06 X 100911566 100911566 C T ARMCX2 Missense_Mutation p.D337N 0.40 deleterious_low_confidence(0.02) benign(0.291) TCGA-EE-A2MK-06 X 101912113 101912113 T C GPRASP1 Missense_Mutation p.L1091P 0.39 tolerated(0.16) benign(0.016) TCGA-EE-A2MK-06 X 105183863 105183863 C T NRK Intron 0.35 TCGA-EE-A2MK-06 X 109764262 109764262 C T TDGF1P3 RNA 0.45 TCGA-EE-A2MK-06 X 11318850 11318850 C T AMELX 3'UTR 0.50 TCGA-EE-A2MK-06 X 114880811 114880811 G A PLS3 Silent p.G489G 0.40 TCGA-EE-A2MK-06 X 115303711 115303711 C T AGTR2 Silent p.L60L 0.35 TCGA-EE-A2MK-06 X 117053493 117053493 G A KLHL13 Silent p.L190L 0.40 TCGA-EE-A2MK-06 X 11784014 11784014 G A MSL3 Intron 0.55 TCGA-EE-A2MK-06 X 118370369 118370369 G A PGRMC1 Missense_Mutation p.D15N 0.42 tolerated(0.23) benign(0.005) TCGA-EE-A2MK-06 X 127185417 127185417 G A ACTRT1 Nonsense_Mutation p.Q257* 0.46 TCGA-EE-A2MK-06 X 134421366 134421366 G A ZNF75D Silent p.F412F 0.39 TCGA-EE-A2MK-06 X 135106572 135106572 C T SLC9A6 Silent p.L516L 0.28 TCGA-EE-A2MK-06 X 135313883 135313883 C G MAP7D3 Missense_Mutation p.E411D 0.19 tolerated(0.12) benign(0.059) TCGA-EE-A2MK-06 X 135428847 135428847 C T GPR112 Silent p.I994I 0.33 TCGA-EE-A2MK-06 X 138668615 138668615 C T MCF2 Missense_Mutation p.E928K 0.33 tolerated(0.13) benign(0.003) TCGA-EE-A2MK-06 X 140270841 140270841 G A LDOC1 Silent p.L122L 0.39 TCGA-EE-A2MK-06 X 142717103 142717103 G T SLITRK4 Silent p.R608R 0.36 TCGA-EE-A2MK-06 X 142718335 142718335 C T SLITRK4 Missense_Mutation p.G197E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 X 151393274 151393274 G A GABRA3 Missense_Mutation p.P199S 0.68 deleterious(0) possibly_damaging(0.817) TCGA-EE-A2MK-06 X 152037581 152037581 G A NSDHL Missense_Mutation p.G348D 0.40 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2MK-06 X 152483062 152483062 G A MAGEA1 5'UTR 0.46 TCGA-EE-A2MK-06 X 152612965 152612965 C T ZNF275 Silent p.F274F 0.44 TCGA-EE-A2MK-06 X 2406968 2406968 A G ZBED1 Missense_Mutation p.F598S 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MK-06 X 26213207 26213207 C T MAGEB6 3'UTR 0.35 TCGA-EE-A2MK-06 X 26213208 26213208 C T MAGEB6 3'UTR 0.35 TCGA-EE-A2MK-06 X 27766044 27766044 C T DCAF8L2 Silent p.F344F 0.45 TCGA-EE-A2MK-06 X 3227976 3227976 C T MXRA5 Missense_Mutation p.M2756I 0.37 deleterious(0.02) benign(0.06) TCGA-EE-A2MK-06 X 3238193 3238193 T C MXRA5 Missense_Mutation p.K1845E 0.52 tolerated(0.1) benign(0.05) TCGA-EE-A2MK-06 X 37979616 37979616 G A SYTL5 Silent p.E556E 0.47 TCGA-EE-A2MK-06 X 48896763 48896763 C T TFE3 Missense_Mutation p.E135K 0.35 tolerated(0.16) unknown(0) TCGA-EE-A2MK-06 X 48896774 48896774 C T TFE3 Missense_Mutation p.R131H 0.40 deleterious(0) unknown(0) TCGA-EE-A2MK-06 X 51150785 51150785 C T CXorf67 Missense_Mutation p.S306F 0.50 deleterious(0.01) possibly_damaging(0.731) TCGA-EE-A2MK-06 X 64138856 64138856 G A ZC4H2 Intron 0.41 TCGA-EE-A2MK-06 X 73812706 73812706 C T RLIM Silent p.G148G 0.38 TCGA-EE-A2MK-06 X 73963906 73963906 C T KIAA2022 Silent p.G162G 0.21 TCGA-EE-A2MK-06 X 79932655 79932655 G A BRWD3 Missense_Mutation p.S1621F 0.46 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A2MK-06 X 79960305 79960305 C T BRWD3 Missense_Mutation p.G865R 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MK-06 X 83599449 83599449 C T HDX Missense_Mutation p.R490Q 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MK-06 X 8768137 8768137 C T FAM9A Missense_Mutation p.G26R 0.34 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EE-A2MK-06 X 89177875 89177875 C T TGIF2LX 3'UTR 0.37 TCGA-EE-A2MK-06 X 99551284 99551284 G A PCDH19 Silent p.I1146I 0.33 TCGA-EE-A2ML-06 10 100185627 100185627 G A HPS1 Missense_Mutation p.T368I 0.28 deleterious(0.01) probably_damaging(1) TCGA-EE-A2ML-06 10 101937916 101937916 A C ERLIN1 Missense_Mutation p.V93G 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A2ML-06 10 103907120 103907120 C T PPRC1 Silent p.S1457S 0.43 TCGA-EE-A2ML-06 10 104157399 104157399 C T NFKB2 Silent p.S206S 0.24 TCGA-EE-A2ML-06 10 104831540 104831540 C T CNNM2 Missense_Mutation p.S726F 0.22 deleterious(0) benign(0.003) TCGA-EE-A2ML-06 10 105005966 105005966 G A RPEL1 Missense_Mutation p.M71I 0.34 deleterious(0.02) benign(0.135) TCGA-EE-A2ML-06 10 123987414 123987414 C T TACC2 Missense_Mutation p.P2596L 0.25 benign(0.101) TCGA-EE-A2ML-06 10 124712447 124712447 G A C10orf88 Missense_Mutation p.S89F 0.35 tolerated(0.27) possibly_damaging(0.735) TCGA-EE-A2ML-06 10 126172720 126172720 C T LHPP Silent p.S46S 0.22 TCGA-EE-A2ML-06 10 127677178 127677178 C T FANK1 Missense_Mutation p.R84C 0.33 deleterious(0) possibly_damaging(0.804) TCGA-EE-A2ML-06 10 135351392 135351392 C T CYP2E1 Silent p.S431S 0.42 TCGA-EE-A2ML-06 10 25886961 25886961 C T GPR158 Silent p.S802S 0.28 TCGA-EE-A2ML-06 10 27052863 27052863 C T ABI1 Missense_Mutation p.G283R 0.27 tolerated(0.34) benign(0.005) TCGA-EE-A2ML-06 10 27687508 27687508 C T PTCHD3 Silent p.R673R 0.15 TCGA-EE-A2ML-06 10 31138998 31138998 G A ZNF438 Silent p.S112S 0.27 TCGA-EE-A2ML-06 10 37451769 37451769 G A ANKRD30A Silent p.L609L 0.32 TCGA-EE-A2ML-06 10 48382189 48382189 A G RBP3 Missense_Mutation p.F1154L 0.28 tolerated(0.07) benign(0.418) TCGA-EE-A2ML-06 10 49381042 49381042 G A FRMPD2 Missense_Mutation p.S1057F 0.58 deleterious(0.04) probably_damaging(0.982) TCGA-EE-A2ML-06 10 49457125 49457125 G A FRMPD2 Missense_Mutation p.P83L 0.33 deleterious(0.05) possibly_damaging(0.856) TCGA-EE-A2ML-06 10 5042756 5042756 G A AKR1C2 Missense_Mutation p.P119S 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A2ML-06 10 50530672 50530672 G A C10orf71 Missense_Mutation p.E28K 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 10 50598203 50598203 T C DRGX Missense_Mutation p.I75M 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2ML-06 10 51769291 51769291 C T AGAP6 Missense_Mutation p.S469L 0.15 deleterious(0.03) benign(0.125) TCGA-EE-A2ML-06 10 61831321 61831321 T A ANK3 Missense_Mutation p.E3106D 0.40 probably_damaging(0.935) TCGA-EE-A2ML-06 10 61835570 61835570 G A ANK3 Missense_Mutation p.S1690L 0.32 probably_damaging(0.95) TCGA-EE-A2ML-06 10 61926631 61926631 C T ANK3 Missense_Mutation p.M834I 0.31 benign(0.018) TCGA-EE-A2ML-06 10 70097677 70097677 G A HNRNPH3 Missense_Mutation p.E59K 0.33 deleterious(0) unknown(0) TCGA-EE-A2ML-06 10 72509717 72509717 C T ADAMTS14 Silent p.P804P 0.29 TCGA-EE-A2ML-06 10 75552441 75552441 C T ZSWIM8 Missense_Mutation p.T715I 0.12 tolerated(0.18) benign(0.044) TCGA-EE-A2ML-06 10 75552442 75552442 C G ZSWIM8 Silent p.T715T 0.12 TCGA-EE-A2ML-06 10 95459814 95459817 CAGC GT FRA10AC1 Frame_Shift_Del p.R16Hfs*13 0.44 TCGA-EE-A2ML-06 10 95791248 95791248 T C PLCE1 Missense_Mutation p.F149L 0.27 tolerated_low_confidence(0.23) benign(0.001) TCGA-EE-A2ML-06 10 96495020 96495020 G A CYP2C18 Missense_Mutation p.G431E 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A2ML-06 10 96824703 96824703 G A CYP2C8 Missense_Mutation p.P166S 0.26 deleterious(0) probably_damaging(0.931) TCGA-EE-A2ML-06 11 120008370 120008370 T A TRIM29 Nonsense_Mutation p.K124* 0.52 TCGA-EE-A2ML-06 11 121037453 121037453 C T TECTA Silent p.I1850I 0.46 TCGA-EE-A2ML-06 11 123513367 123513367 G A SCN3B Missense_Mutation p.R78W 0.38 deleterious(0.01) probably_damaging(0.912) TCGA-EE-A2ML-06 11 16872745 16872745 G A PLEKHA7 Missense_Mutation p.S230F 0.38 deleterious(0) probably_damaging(0.953) TCGA-EE-A2ML-06 11 17419306 17419306 C T ABCC8 Silent p.V1264V 0.32 TCGA-EE-A2ML-06 11 18956400 18956400 G A MRGPRX1 5'UTR 0.37 TCGA-EE-A2ML-06 11 22833377 22833377 G A GAS2 Missense_Mutation p.G253R 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 11 2337829 2337829 C T TSPAN32 Silent p.S217S 0.27 TCGA-EE-A2ML-06 11 30928159 30928159 G A DCDC1 Silent p.F1344F 0.25 TCGA-EE-A2ML-06 11 43904156 43904156 G A ALKBH3 5'UTR 0.33 TCGA-EE-A2ML-06 11 46405032 46405032 G A MDK Silent p.K140K 0.18 TCGA-EE-A2ML-06 11 46406905 46406905 C T CHRM4 Silent p.T401T 0.36 TCGA-EE-A2ML-06 11 479146 479146 C T PTDSS2 Silent p.L143L 0.36 TCGA-EE-A2ML-06 11 4825355 4825355 C G OR52R1 Missense_Mutation p.A86P 0.37 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A2ML-06 11 48510946 48510946 G A OR4A47 Missense_Mutation p.G201E 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2ML-06 11 49597782 49597782 G A RP11-707M1.1 RNA 0.28 TCGA-EE-A2ML-06 11 55579742 55579742 G A OR5L1 Missense_Mutation p.S267N 0.33 tolerated(0.06) benign(0.019) TCGA-EE-A2ML-06 11 55587134 55587134 G A OR5D18 Missense_Mutation p.G10E 0.51 tolerated(1) benign(0.001) TCGA-EE-A2ML-06 11 55655529 55655529 G A TRIM51 Missense_Mutation p.E177K 0.37 tolerated(0.28) benign(0.008) TCGA-EE-A2ML-06 11 55890328 55890328 G A OR8H3 Silent p.V160V 0.34 TCGA-EE-A2ML-06 11 55926886 55926886 T C OR8K5 Missense_Mutation p.K303R 0.35 tolerated_low_confidence(1) benign(0) TCGA-EE-A2ML-06 11 56043123 56043123 G A OR5T1 Silent p.G3G 0.29 TCGA-EE-A2ML-06 11 56128428 56128428 A G OR8J1 Missense_Mutation p.K236E 0.29 deleterious(0) probably_damaging(0.933) TCGA-EE-A2ML-06 11 57004463 57004463 C T APLNR Missense_Mutation p.D6N 0.35 tolerated(0.16) benign(0.08) TCGA-EE-A2ML-06 11 57099698 57099698 A G SSRP1 Missense_Mutation p.L310P 0.30 tolerated(0.07) possibly_damaging(0.707) TCGA-EE-A2ML-06 11 591394 591394 C T PHRF1 Missense_Mutation p.S144F 0.27 deleterious(0) probably_damaging(0.921) TCGA-EE-A2ML-06 11 60233400 60233400 G A MS4A1 Missense_Mutation p.G115R 0.15 tolerated(0.07) benign(0.055) TCGA-EE-A2ML-06 11 60233401 60233401 G A MS4A1 Missense_Mutation p.G115E 0.17 tolerated(0.06) possibly_damaging(0.606) TCGA-EE-A2ML-06 11 60704034 60704034 G A TMEM132A Silent p.L910L 0.29 TCGA-EE-A2ML-06 11 6292024 6292024 G A CCKBR Missense_Mutation p.G268R 0.40 tolerated(0.18) benign(0.005) TCGA-EE-A2ML-06 11 63978105 63978105 C T FERMT3 Silent p.D61D 0.25 TCGA-EE-A2ML-06 11 64898200 64898200 G T SYVN1 Missense_Mutation p.P346Q 0.19 tolerated(0.38) unknown(0) TCGA-EE-A2ML-06 11 64898201 64898201 G T SYVN1 Missense_Mutation p.P346T 0.19 tolerated(0.14) unknown(0) TCGA-EE-A2ML-06 11 65362965 65362965 G A KCNK7 Silent p.P93P 0.19 TCGA-EE-A2ML-06 11 65770751 65770751 C T BANF1 Silent p.F10F 0.25 TCGA-EE-A2ML-06 11 66332102 66332102 G A CTSF Silent p.I416I 0.45 TCGA-EE-A2ML-06 11 66458762 66458762 C T SPTBN2 Missense_Mutation p.S1853N 0.27 tolerated(0.17) probably_damaging(0.992) TCGA-EE-A2ML-06 11 67077252 67077252 C T SSH3 Missense_Mutation p.H408Y 0.29 deleterious(0) benign(0.154) TCGA-EE-A2ML-06 11 67161031 67161031 C T RAD9A Missense_Mutation p.S100F 0.29 tolerated(0.24) benign(0.052) TCGA-EE-A2ML-06 11 67265106 67265106 G A PITPNM1 Silent p.P609P 0.31 TCGA-EE-A2ML-06 11 7021941 7021941 G A ZNF214 Missense_Mutation p.H325Y 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A2ML-06 11 7022704 7022704 C T ZNF214 Nonsense_Mutation p.W70* 0.28 TCGA-EE-A2ML-06 11 7063624 7063624 G A NLRP14 Missense_Mutation p.G123R 0.37 tolerated(0.41) benign(0.179) TCGA-EE-A2ML-06 11 71146749 71146749 C T DHCR7 Missense_Mutation p.R367H 0.21 tolerated(0.13) benign(0.005) TCGA-EE-A2ML-06 11 73064052 73064052 C T ARHGEF17 Nonsense_Mutation p.Q1150* 0.33 TCGA-EE-A2ML-06 11 78147748 78147748 A G NARS2 Missense_Mutation p.F468L 0.30 deleterious(0.01) possibly_damaging(0.631) TCGA-EE-A2ML-06 11 92525957 92525957 C T FAT3 Nonsense_Mutation p.R1546* 0.28 TCGA-EE-A2ML-06 12 100043256 100043256 G A FAM71C 3'UTR 0.33 TCGA-EE-A2ML-06 12 101493382 101493382 G A ANO4 Missense_Mutation p.R643K 0.33 deleterious(0.01) benign(0.037) TCGA-EE-A2ML-06 12 104056647 104056647 G A STAB2 Silent p.V631V 0.42 TCGA-EE-A2ML-06 12 104063386 104063386 C T STAB2 Missense_Mutation p.P747L 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 12 10587979 10587979 G A KLRC2 Missense_Mutation p.A73V 0.18 deleterious(0.02) possibly_damaging(0.622) TCGA-EE-A2ML-06 12 10774548 10774548 G A STYK1 Missense_Mutation p.P331S 0.31 tolerated(0.1) probably_damaging(1) TCGA-EE-A2ML-06 12 109042615 109042615 G A CORO1C Silent p.F357F 0.29 TCGA-EE-A2ML-06 12 11421581 11421581 G A PRB3 Missense_Mutation p.P29L 0.27 tolerated_low_confidence(1) unknown(0) TCGA-EE-A2ML-06 12 122687914 122687914 C T LRRC43 Silent p.P632P 0.46 TCGA-EE-A2ML-06 12 125465048 125465048 G A DHX37 Silent p.S242S 0.42 TCGA-EE-A2ML-06 12 130015650 130015650 G A TMEM132D Missense_Mutation p.P357S 0.37 tolerated(0.29) benign(0.061) TCGA-EE-A2ML-06 12 130883604 130883604 C T RIMBP2 3'UTR 0.40 TCGA-EE-A2ML-06 12 130919293 130919293 C T RIMBP2 Missense_Mutation p.E730K 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2ML-06 12 13720055 13720055 G A GRIN2B Silent p.I834I 0.31 TCGA-EE-A2ML-06 12 13720066 13720066 G A GRIN2B Missense_Mutation p.L831F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 12 14610217 14610217 C G ATF7IP Missense_Mutation p.P716A 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2ML-06 12 14778782 14778782 G A GUCY2C Nonsense_Mutation p.R773* 0.33 TCGA-EE-A2ML-06 12 15090942 15090942 G A ERP27 Missense_Mutation p.P47S 0.33 tolerated(0.08) benign(0.128) TCGA-EE-A2ML-06 12 1943665 1943665 G A LRTM2 Silent p.Q297Q 0.34 TCGA-EE-A2ML-06 12 21054378 21054378 G A SLCO1B3 Silent p.R614R 0.35 TCGA-EE-A2ML-06 12 21172237 21172237 G A SLCO1B7 Silent p.P47P 0.24 TCGA-EE-A2ML-06 12 21448671 21448671 C T SLCO1A2 Missense_Mutation p.M377I 0.27 deleterious(0) possibly_damaging(0.557) TCGA-EE-A2ML-06 12 26868318 26868318 C T ITPR2 Missense_Mutation p.E257K 0.22 tolerated(1) benign(0.001) TCGA-EE-A2ML-06 12 2742834 2742834 A C CACNA1C Missense_Mutation p.I1310L 0.27 deleterious(0) benign(0.258) TCGA-EE-A2ML-06 12 306045 306045 G A SLC6A12 Missense_Mutation p.P360L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 12 44166759 44166761 AAC - IRAK4 In_Frame_Del p.N179del 0.22 TCGA-EE-A2ML-06 12 48880502 48880502 G A C12orf54 Nonsense_Mutation p.W43* 0.32 TCGA-EE-A2ML-06 12 4920426 4920426 C T KCNA6 Missense_Mutation p.P407S 0.24 tolerated(1) benign(0.007) TCGA-EE-A2ML-06 12 50189157 50189157 C G NCKAP5L Missense_Mutation p.R829P 0.28 tolerated(0.14) possibly_damaging(0.479) TCGA-EE-A2ML-06 12 51492581 51492581 A T TFCP2 Missense_Mutation p.I466N 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2ML-06 12 52779212 52779212 C T KRT84 Missense_Mutation p.R53Q 0.47 tolerated(0.06) probably_damaging(0.953) TCGA-EE-A2ML-06 12 58335605 58335605 T C XRCC6BP1 Missense_Mutation p.F41L 0.33 tolerated(0.67) benign(0.001) TCGA-EE-A2ML-06 12 59272618 59272618 G A LRIG3 Silent p.L691L 0.29 TCGA-EE-A2ML-06 12 59284549 59284549 G C LRIG3 Missense_Mutation p.P138R 0.30 tolerated(0.26) possibly_damaging(0.493) TCGA-EE-A2ML-06 12 81205420 81205420 T G LIN7A Missense_Mutation p.K176Q 0.30 deleterious(0) probably_damaging(0.937) TCGA-EE-A2ML-06 12 85450857 85450857 G A LRRIQ1 Silent p.K762K 0.32 TCGA-EE-A2ML-06 12 94243947 94243947 G A CRADD Nonsense_Mutation p.W167* 0.29 TCGA-EE-A2ML-06 12 94243948 94243948 G A CRADD Nonsense_Mutation p.W167* 0.29 TCGA-EE-A2ML-06 12 97078897 97078897 C T C12orf55 Silent p.L1965L 0.38 TCGA-EE-A2ML-06 12 9716769 9716769 G A RP11-726G1.1 RNA 0.31 TCGA-EE-A2ML-06 13 100925546 100925546 C T PCCA Silent p.F337F 0.17 TCGA-EE-A2ML-06 13 28919657 28919657 G A FLT1 Silent p.I760I 0.27 TCGA-EE-A2ML-06 13 29286936 29286936 C T SLC46A3 Missense_Mutation p.G314E 0.37 deleterious(0) probably_damaging(0.987) TCGA-EE-A2ML-06 13 29600696 29600696 G A MTUS2 Missense_Mutation p.E631K 0.45 deleterious(0.05) possibly_damaging(0.725) TCGA-EE-A2ML-06 13 32914811 32914811 C T BRCA2 Missense_Mutation p.P2107S 0.27 tolerated(0.4) possibly_damaging(0.453) TCGA-EE-A2ML-06 13 35731359 35731359 G A NBEA Nonsense_Mutation p.W932* 0.45 TCGA-EE-A2ML-06 13 37014267 37014267 C T CCNA1 Missense_Mutation p.L349F 0.33 deleterious(0.05) probably_damaging(0.995) TCGA-EE-A2ML-06 13 41495637 41495637 G A SUGT1P3 RNA 0.29 TCGA-EE-A2ML-06 13 77672117 77672117 G A MYCBP2 Missense_Mutation p.H3020Y 0.44 benign(0.002) TCGA-EE-A2ML-06 13 93518546 93518546 G A GPC5 Missense_Mutation p.D525N 0.32 tolerated(0.18) benign(0.002) TCGA-EE-A2ML-06 13 95230979 95230984 CATACC - TGDS Splice_Site p.X220_splice 0.11 TCGA-EE-A2ML-06 14 101493453 101493453 G A MIR329-2 RNA 0.28 TCGA-EE-A2ML-06 14 105412865 105412865 C T AHNAK2 Missense_Mutation p.D2975N 0.32 benign(0.154) TCGA-EE-A2ML-06 14 106518559 106518559 C T IGHV3-7 Silent p.L64L 0.37 TCGA-EE-A2ML-06 14 106622063 106622063 C T IGHV3-16 Missense_Mutation p.G61E 0.30 tolerated_low_confidence(0.1) possibly_damaging(0.529) TCGA-EE-A2ML-06 14 20389385 20389385 C T OR4K5 Missense_Mutation p.S207F 0.38 deleterious(0) probably_damaging(0.982) TCGA-EE-A2ML-06 14 20443908 20443908 C T OR4K15 Silent p.S77S 0.35 TCGA-EE-A2ML-06 14 21052207 21052207 G A RNASE11 Missense_Mutation p.P143S 0.44 tolerated(0.46) benign(0.012) TCGA-EE-A2ML-06 14 22205159 22205159 G A TRAV4 Missense_Mutation p.E75K 0.31 tolerated(0.66) benign(0.284) TCGA-EE-A2ML-06 14 22409662 22409662 C T TRAV9-2 Missense_Mutation p.S51F 0.33 tolerated(0.72) benign(0.005) TCGA-EE-A2ML-06 14 22636742 22636742 C T TRAV30 Silent p.F65F 0.43 TCGA-EE-A2ML-06 14 22783182 22783182 C T TRAV40 Missense_Mutation p.L50F 0.63 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2ML-06 14 24523608 24523608 C T LRRC16B Silent p.L84L 0.35 TCGA-EE-A2ML-06 14 24545385 24545385 G A CPNE6 Missense_Mutation p.G318R 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2ML-06 14 24729713 24729713 G A TGM1 Nonsense_Mutation p.Q234* 0.22 TCGA-EE-A2ML-06 14 24774194 24774194 C T NOP9 Nonsense_Mutation p.R602* 0.36 TCGA-EE-A2ML-06 14 38678944 38678944 C A SSTR1 Missense_Mutation p.S117Y 0.28 deleterious(0.02) possibly_damaging(0.856) TCGA-EE-A2ML-06 14 52508839 52508839 G A NID2 Silent p.N603N 0.36 TCGA-EE-A2ML-06 14 63416994 63416994 C T KCNH5 Nonsense_Mutation p.W409* 0.31 TCGA-EE-A2ML-06 14 65234495 65234495 C T SPTB Silent p.G2035G 0.32 TCGA-EE-A2ML-06 14 65239389 65239389 G A SPTB Missense_Mutation p.P1821L 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2ML-06 14 69521269 69521269 G A DCAF5 Silent p.L712L 0.35 TCGA-EE-A2ML-06 14 90650916 90650916 C T KCNK13 Missense_Mutation p.L266F 0.24 tolerated(0.09) possibly_damaging(0.464) TCGA-EE-A2ML-06 14 91738957 91738957 A G CCDC88C 3'UTR 0.31 TCGA-EE-A2ML-06 14 91875053 91875053 G A CCDC88C Missense_Mutation p.R74C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 14 94718218 94718218 C T PPP4R4 Missense_Mutation p.P617L 0.27 deleterious(0) benign(0.223) TCGA-EE-A2ML-06 14 94780373 94780373 C T SERPINA6 Missense_Mutation p.G205S 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2ML-06 14 95109925 95109925 G A SERPINA13P RNA 0.29 TCGA-EE-A2ML-06 15 22368758 22368758 C T OR4M2 Silent p.F61F 0.31 TCGA-EE-A2ML-06 15 22382687 22382687 C T OR4N4 Missense_Mutation p.S72F 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2ML-06 15 22382691 22382691 C T OR4N4 Silent p.Y73Y 0.17 TCGA-EE-A2ML-06 15 26828491 26828491 C T GABRB3 Missense_Mutation p.E178K 0.30 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2ML-06 15 34159949 34159949 G A AVEN Silent p.P240P 0.12 TCGA-EE-A2ML-06 15 35083353 35083353 C T ACTC1 Missense_Mutation p.E318K 0.33 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-EE-A2ML-06 15 40661934 40661934 C T DISP2 Silent p.P1207P 0.37 TCGA-EE-A2ML-06 15 51260513 51260513 G A AP4E1 Silent p.Q635Q 0.33 TCGA-EE-A2ML-06 15 54306718 54306718 G A UNC13C Missense_Mutation p.D540N 0.51 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2ML-06 15 58476165 58476165 G A AQP9 Missense_Mutation p.G240E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2ML-06 15 63032875 63032875 C T TLN2 Missense_Mutation p.S1311L 0.34 deleterious(0) possibly_damaging(0.825) TCGA-EE-A2ML-06 15 74623056 74623056 G A CCDC33 Silent p.R503R 0.32 TCGA-EE-A2ML-06 15 74654418 74654418 G A CYP11A1 Intron 0.24 TCGA-EE-A2ML-06 15 75942128 75942128 C T SNX33 Missense_Mutation p.P229S 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2ML-06 15 78211452 78211452 C T RP11-114H24.7 Intron 0.37 TCGA-EE-A2ML-06 15 79339128 79339128 G A RASGRF1 Missense_Mutation p.P280S 0.28 deleterious(0.05) benign(0.169) TCGA-EE-A2ML-06 15 81181826 81181826 G A KIAA1199 Missense_Mutation p.E327K 0.29 tolerated(0.26) benign(0.141) TCGA-EE-A2ML-06 15 85402606 85402606 G A ALPK3 Missense_Mutation p.G1519D 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2ML-06 15 89379435 89379435 A G ACAN 5'UTR 0.30 TCGA-EE-A2ML-06 15 90281396 90281396 G A WDR93 Silent p.R630R 0.31 TCGA-EE-A2ML-06 16 10032214 10032214 C T GRIN2A Silent p.V203V 0.24 TCGA-EE-A2ML-06 16 11361865 11361865 C T TNP2 Nonsense_Mutation p.W135* 0.27 TCGA-EE-A2ML-06 16 14340567 14340567 G A MKL2 Missense_Mutation p.E484K 0.22 tolerated(0.77) possibly_damaging(0.615) TCGA-EE-A2ML-06 16 14676080 14676080 A G PARN Missense_Mutation p.Y384H 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 16 15931989 15931989 C - MYH11 Frame_Shift_Del p.E41Rfs*39 0.25 TCGA-EE-A2ML-06 16 21181806 21181806 C T TMEM159 Missense_Mutation p.P49S 0.32 deleterious(0.03) probably_damaging(1) TCGA-EE-A2ML-06 16 24268046 24268046 C T CACNG3 5'UTR 0.40 TCGA-EE-A2ML-06 16 24268165 24268165 G A CACNG3 Silent p.T30T 0.34 TCGA-EE-A2ML-06 16 25232851 25232851 C T AQP8 Missense_Mutation p.P112S 0.32 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A2ML-06 16 25239881 25239881 G A AQP8 3'UTR 0.36 TCGA-EE-A2ML-06 16 27460428 27460428 C T IL21R Missense_Mutation p.P481S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 16 30941595 30941595 C T FBXL19 Missense_Mutation p.R351W 0.30 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A2ML-06 16 3188779 3188779 C T ZNF213 Missense_Mutation p.P186L 0.20 tolerated(0.3) benign(0.015) TCGA-EE-A2ML-06 16 46766545 46766545 C T MYLK3 Missense_Mutation p.G346E 0.37 tolerated(0.65) benign(0.008) TCGA-EE-A2ML-06 16 4774810 4774810 G A ANKS3 Missense_Mutation p.P172S 0.34 deleterious(0.03) probably_damaging(1) TCGA-EE-A2ML-06 16 51174276 51174276 G A SALL1 Silent p.P619P 0.37 TCGA-EE-A2ML-06 16 56435650 56435650 G A AMFR Silent p.F360F 0.28 TCGA-EE-A2ML-06 16 677562 677562 C T RAB40C Silent p.S262S 0.43 TCGA-EE-A2ML-06 16 68328619 68328619 T A SLC7A6 Missense_Mutation p.V345E 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A2ML-06 16 70351453 70351453 G A DDX19B Silent p.K117K 0.24 TCGA-EE-A2ML-06 16 77918561 77918561 C T VAT1L Silent p.I313I 0.48 TCGA-EE-A2ML-06 16 78062059 78062059 C T CLEC3A Silent p.A66A 0.28 TCGA-EE-A2ML-06 16 81236314 81236314 A G PKD1L2 Missense_Mutation p.F312L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2ML-06 16 81735267 81735267 C T CMIP Silent p.I586I 0.37 TCGA-EE-A2ML-06 16 82032971 82032971 G A SDR42E1 Silent p.P309P 0.35 TCGA-EE-A2ML-06 16 82033147 82033147 G A SDR42E1 Missense_Mutation p.P251S 0.30 tolerated(0.06) benign(0.038) TCGA-EE-A2ML-06 16 87454280 87454280 G A ZCCHC14 Missense_Mutation p.P158S 0.44 deleterious(0.04) benign(0.343) TCGA-EE-A2ML-06 16 89789747 89789747 C T ZNF276 Silent p.A212A 0.32 TCGA-EE-A2ML-06 17 10216666 10216666 C A MYH13 Missense_Mutation p.K1330N 0.36 deleterious(0.01) possibly_damaging(0.658) TCGA-EE-A2ML-06 17 10415854 10415854 C T MYH1 Missense_Mutation p.E340K 0.22 deleterious(0) benign(0.115) TCGA-EE-A2ML-06 17 12639554 12639554 G A MYOCD Silent p.P164P 0.32 TCGA-EE-A2ML-06 17 14110519 14110519 C T COX10 Missense_Mutation p.P441S 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2ML-06 17 14110520 14110520 C T COX10 Missense_Mutation p.P441L 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2ML-06 17 26370206 26370206 C T NLK Missense_Mutation p.P103S 0.44 tolerated(0.08) possibly_damaging(0.857) TCGA-EE-A2ML-06 17 2651399 2651399 G A MIR1253 RNA 0.15 TCGA-EE-A2ML-06 17 27445449 27445449 G A MYO18A Silent p.L613L 0.33 TCGA-EE-A2ML-06 17 29162147 29162147 G A ATAD5 Missense_Mutation p.E350K 0.14 tolerated(0.16) possibly_damaging(0.844) TCGA-EE-A2ML-06 17 29701167 29701167 C T NF1 Silent p.I2838I 0.30 TCGA-EE-A2ML-06 17 30179091 30179091 C T COPRS 3'UTR 0.43 TCGA-EE-A2ML-06 17 3119772 3119772 C T OR1A1 Silent p.F286F 0.28 TCGA-EE-A2ML-06 17 34072179 34072179 C T GAS2L2 Silent p.R779R 0.28 TCGA-EE-A2ML-06 17 35736186 35736186 G A C17orf78 Missense_Mutation p.R86K 0.32 tolerated(1) benign(0.001) TCGA-EE-A2ML-06 17 46030478 46030478 C T PRR15L Silent p.R41R 0.64 TCGA-EE-A2ML-06 17 46030479 46030479 C T PRR15L Missense_Mutation p.R41K 0.64 tolerated_low_confidence(0.7) benign(0.01) TCGA-EE-A2ML-06 17 46620419 46620419 G A HOXB2 3'UTR 0.58 TCGA-EE-A2ML-06 17 4995531 4995531 G A ZFP3 Silent p.Q244Q 0.26 TCGA-EE-A2ML-06 17 55062798 55062798 C T SCPEP1 Silent p.D95D 0.68 TCGA-EE-A2ML-06 17 60030396 60030396 G A MED13 Missense_Mutation p.P2016L 0.70 tolerated(0.07) benign(0.26) TCGA-EE-A2ML-06 17 72815909 72815909 C T TMEM104 Silent p.L219L 0.73 TCGA-EE-A2ML-06 17 80616413 80616413 G A RAB40B Silent p.I173I 0.61 TCGA-EE-A2ML-06 18 21119887 21119887 C T NPC1 Missense_Mutation p.E895K 0.38 tolerated(0.15) benign(0.033) TCGA-EE-A2ML-06 18 28669437 28669437 G A DSC2 Missense_Mutation p.R199C 0.41 tolerated(0.05) possibly_damaging(0.875) TCGA-EE-A2ML-06 18 28711671 28711671 G A DSC1 Silent p.S791S 0.35 TCGA-EE-A2ML-06 18 29617132 29617132 C T RNF125 Missense_Mutation p.P73L 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A2ML-06 18 31311945 31311945 G A ASXL3 Missense_Mutation p.G298E 0.29 possibly_damaging(0.907) TCGA-EE-A2ML-06 18 47581679 47581679 C T MYO5B Missense_Mutation p.E33K 0.31 tolerated(0.6) possibly_damaging(0.611) TCGA-EE-A2ML-06 18 48190772 48190772 G A MAPK4 Silent p.R148R 0.21 TCGA-EE-A2ML-06 18 60795853 60795853 T C BCL2 3'UTR 0.22 TCGA-EE-A2ML-06 18 61324516 61324516 A C SERPINB3 Missense_Mutation p.F200L 0.17 deleterious(0) probably_damaging(0.975) TCGA-EE-A2ML-06 18 61654188 61654188 C T SERPINB8 Silent p.F267F 0.40 TCGA-EE-A2ML-06 18 67531653 67531653 G A CD226 Missense_Mutation p.P303L 0.25 deleterious(0) possibly_damaging(0.891) TCGA-EE-A2ML-06 18 70205589 70205589 C T CBLN2 Missense_Mutation p.G166D 0.31 deleterious(0.05) benign(0.097) TCGA-EE-A2ML-06 19 10071165 10071165 C T COL5A3 Nonsense_Mutation p.W1720* 0.33 TCGA-EE-A2ML-06 19 11596514 11596514 G A ZNF653 Silent p.F509F 0.36 TCGA-EE-A2ML-06 19 12126357 12126357 C T ZNF433 Missense_Mutation p.R442K 0.35 tolerated(0.21) possibly_damaging(0.567) TCGA-EE-A2ML-06 19 12975694 12975694 G A MAST1 Missense_Mutation p.E480K 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 19 15079140 15079140 C T SLC1A6 Missense_Mutation p.A175T 0.22 tolerated(0.16) benign(0.099) TCGA-EE-A2ML-06 19 15759998 15759998 G A CYP4F3 Missense_Mutation p.G185D 0.28 tolerated(0.16) benign(0.049) TCGA-EE-A2ML-06 19 16589921 16589921 C T CALR3 3'UTR 0.35 TCGA-EE-A2ML-06 19 16908556 16908556 G A NWD1 Silent p.S1106S 0.34 TCGA-EE-A2ML-06 19 16962281 16962281 C T SIN3B Missense_Mutation p.T262I 0.29 tolerated(0.5) benign(0.001) TCGA-EE-A2ML-06 19 16962282 16962282 C T SIN3B Silent p.T262T 0.29 TCGA-EE-A2ML-06 19 17534812 17534812 C T MVB12A Intron 0.23 TCGA-EE-A2ML-06 19 22785429 22785429 G A AC011467.1 5'Flank 0.25 TCGA-EE-A2ML-06 19 23159296 23159296 C T ZNF728 Silent p.E281E 0.40 TCGA-EE-A2ML-06 19 2876127 2876127 C T ZNF556 Missense_Mutation p.S56F 0.37 deleterious(0.02) probably_damaging(0.935) TCGA-EE-A2ML-06 19 34180240 34180240 C T CHST8 Missense_Mutation p.L25F 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 19 3434308 3434308 C T NFIC Missense_Mutation p.S248F 0.36 deleterious(0) probably_damaging(0.99) TCGA-EE-A2ML-06 19 3434309 3434309 C T NFIC Silent p.S248S 0.38 TCGA-EE-A2ML-06 19 35793435 35793435 A G MAG Missense_Mutation p.N352S 0.34 tolerated(0.14) benign(0.43) TCGA-EE-A2ML-06 19 39214875 39214875 C T ACTN4 Missense_Mutation p.H591Y 0.23 tolerated(0.05) benign(0.102) TCGA-EE-A2ML-06 19 39847698 39847698 C T SAMD4B Silent p.I55I 0.37 TCGA-EE-A2ML-06 19 40398331 40398331 C T FCGBP Silent p.G2212G 0.21 TCGA-EE-A2ML-06 19 40740978 40740978 G A AKT2 Missense_Mutation p.S447F 0.30 tolerated(0.08) benign(0.006) TCGA-EE-A2ML-06 19 41518707 41518707 C T CYP2B6 Silent p.I427I 0.29 TCGA-EE-A2ML-06 19 42353257 42353257 G A DMRTC2 Missense_Mutation p.G230R 0.43 deleterious(0.02) possibly_damaging(0.894) TCGA-EE-A2ML-06 19 43373113 43373113 G A PSG1 Silent p.T261T 0.32 TCGA-EE-A2ML-06 19 43586677 43586677 C T PSG2 Nonsense_Mutation p.W15* 0.33 TCGA-EE-A2ML-06 19 49464236 49464236 C T BAX Missense_Mutation p.S180F 0.41 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2ML-06 19 50455651 50455651 C T SIGLEC11 Missense_Mutation p.G551E 0.41 tolerated(0.57) benign(0.001) TCGA-EE-A2ML-06 19 51022166 51022166 G A LRRC4B Silent p.I268I 0.18 TCGA-EE-A2ML-06 19 51630351 51630351 C T SIGLEC9 Silent p.V271V 0.28 TCGA-EE-A2ML-06 19 53014536 53014536 C T ZNF578 Missense_Mutation p.S301F 0.24 tolerated(0.58) possibly_damaging(0.693) TCGA-EE-A2ML-06 19 53303281 53303281 G A ZNF28 Missense_Mutation p.P606L 0.24 deleterious(0.03) benign(0.093) TCGA-EE-A2ML-06 19 53454451 53454451 G A ZNF816 Nonsense_Mutation p.Q193* 0.37 TCGA-EE-A2ML-06 19 53572054 53572054 G A ZNF160 Missense_Mutation p.S578L 0.28 deleterious(0.04) possibly_damaging(0.879) TCGA-EE-A2ML-06 19 53668429 53668429 G A ZNF665 Silent p.A438A 0.48 TCGA-EE-A2ML-06 19 53905318 53905318 G A ZNF765 Missense_Mutation p.G6S 0.21 deleterious(0.04) benign(0.176) TCGA-EE-A2ML-06 19 53913011 53913011 G A ZNF765 3'UTR 0.26 TCGA-EE-A2ML-06 19 54137815 54137815 G A DPRX Missense_Mutation p.R20Q 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2ML-06 19 54973221 54973221 C T LENG9 3'UTR 0.33 TCGA-EE-A2ML-06 19 55145105 55145105 C T LILRB1 Silent p.P426P 0.30 TCGA-EE-A2ML-06 19 55330026 55330026 C T KIR3DL1 Silent p.P109P 0.24 TCGA-EE-A2ML-06 19 55349240 55349240 C T KIR2DS4 Missense_Mutation p.L94F 0.35 tolerated_low_confidence(0.6) possibly_damaging(0.634) TCGA-EE-A2ML-06 19 55495043 55495043 G A NLRP2 Silent p.K659K 0.27 TCGA-EE-A2ML-06 19 55663277 55663277 C T TNNI3 Silent p.R186R 0.41 TCGA-EE-A2ML-06 19 56701796 56701796 G A ZSCAN5B Silent p.P296P 0.33 TCGA-EE-A2ML-06 19 5684815 5684815 C T HSD11B1L Intron 0.37 TCGA-EE-A2ML-06 19 57326417 57326417 C T PEG3 Silent p.R1131R 0.33 TCGA-EE-A2ML-06 19 58153069 58153069 C T ZNF211 Silent p.S470S 0.39 TCGA-EE-A2ML-06 19 58371159 58371159 G A ZNF587 Missense_Mutation p.G460E 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 19 58967114 58967114 A G ZNF324B Missense_Mutation p.K268R 0.18 tolerated(0.17) probably_damaging(0.926) TCGA-EE-A2ML-06 19 9014698 9014698 C T MUC16 Silent p.E12759E 0.28 TCGA-EE-A2ML-06 19 9049043 9049043 G A MUC16 Missense_Mutation p.S10863L 0.33 benign(0.402) TCGA-EE-A2ML-06 19 9049196 9049196 G T MUC16 Missense_Mutation p.T10812K 0.28 benign(0.032) TCGA-EE-A2ML-06 1 103453251 103453251 C T COL11A1 Missense_Mutation p.G814R 0.26 unknown(0) TCGA-EE-A2ML-06 1 112042914 112042914 C T ADORA3 Intron 0.24 TCGA-EE-A2ML-06 1 112042915 112042915 C T ADORA3 Intron 0.25 TCGA-EE-A2ML-06 1 11346221 11346221 C T UBIAD1 3'UTR 0.30 TCGA-EE-A2ML-06 1 11346222 11346222 C T UBIAD1 3'UTR 0.30 TCGA-EE-A2ML-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.32 tolerated(0.06) benign(0.006) TCGA-EE-A2ML-06 1 11731999 11731999 C T FBXO6 Missense_Mutation p.S143F 0.17 deleterious(0) probably_damaging(0.996) TCGA-EE-A2ML-06 1 117695783 117695783 C T VTCN1 Silent p.T218T 0.36 TCGA-EE-A2ML-06 1 120437244 120437244 C T ADAM30 Silent p.T572T 0.33 TCGA-EE-A2ML-06 1 144816614 144816614 C T NBPF9 Silent p.V248V 0.28 TCGA-EE-A2ML-06 1 149902774 149902774 G A MTMR11 Silent p.F458F 0.31 TCGA-EE-A2ML-06 1 151134321 151134321 G A LYSMD1 Missense_Mutation p.P146S 0.28 tolerated(0.26) benign(0.007) TCGA-EE-A2ML-06 1 151787564 151787564 C T RORC Silent p.E212E 0.28 TCGA-EE-A2ML-06 1 152552164 152552164 G A LCE3D Silent p.G83G 0.32 TCGA-EE-A2ML-06 1 152733215 152733215 C T KPRP Missense_Mutation p.P384L 0.20 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-EE-A2ML-06 1 152944543 152944543 C T SPRR4 Silent p.T59T 0.32 TCGA-EE-A2ML-06 1 156348077 156348077 C T RHBG Missense_Mutation p.T187I 0.33 tolerated(0.08) benign(0.243) TCGA-EE-A2ML-06 1 157805633 157805633 G A CD5L Missense_Mutation p.S123L 0.56 tolerated(0.41) benign(0.002) TCGA-EE-A2ML-06 1 158612330 158612330 C T SPTA1 Silent p.R1536R 0.12 TCGA-EE-A2ML-06 1 161017585 161017585 G A ARHGAP30 Missense_Mutation p.P1076S 0.35 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-EE-A2ML-06 1 161594380 161594380 G A FCGR3B Silent p.V245V 0.34 TCGA-EE-A2ML-06 1 166818940 166818940 G A POGK Missense_Mutation p.R375Q 0.44 tolerated(0.33) probably_damaging(0.968) TCGA-EE-A2ML-06 1 166958537 166958537 G A MAEL 5'UTR 0.36 TCGA-EE-A2ML-06 1 167042741 167042741 G A GPA33 Missense_Mutation p.P27S 0.29 tolerated(0.1) benign(0.036) TCGA-EE-A2ML-06 1 171761261 171761261 C T METTL13 Missense_Mutation p.P527S 0.25 tolerated(0.13) possibly_damaging(0.817) TCGA-EE-A2ML-06 1 175332856 175332856 G A TNR Nonsense_Mutation p.R899* 0.41 TCGA-EE-A2ML-06 1 17588638 17588638 C T PADI3 Missense_Mutation p.S95F 0.24 deleterious(0.03) possibly_damaging(0.812) TCGA-EE-A2ML-06 1 176833416 176833416 G A ASTN1 3'UTR 0.23 TCGA-EE-A2ML-06 1 179631298 179631298 G A TDRD5 Nonsense_Mutation p.W794* 0.33 TCGA-EE-A2ML-06 1 18021672 18021672 C A ARHGEF10L Silent p.V1068V 0.35 TCGA-EE-A2ML-06 1 186644398 186644398 G A PTGS2 Missense_Mutation p.S463L 0.32 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A2ML-06 1 19644127 19644127 C T PQLC2 5'UTR 0.38 TCGA-EE-A2ML-06 1 196871680 196871680 C T CFHR4 Missense_Mutation p.S63L 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2ML-06 1 197298036 197298036 G A CRB1 Silent p.L185L 0.27 TCGA-EE-A2ML-06 1 201252992 201252992 C T PKP1 Silent p.S54S 0.17 TCGA-EE-A2ML-06 1 201752716 201752716 C T NAV1 Missense_Mutation p.P847L 0.17 deleterious(0.02) probably_damaging(1) TCGA-EE-A2ML-06 1 202245493 202245493 C T LGR6 Missense_Mutation p.S163F 0.25 tolerated(0.06) probably_damaging(0.981) TCGA-EE-A2ML-06 1 205272618 205272618 G A NUAK2 Missense_Mutation p.T616I 0.45 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A2ML-06 1 212799772 212799772 G A FAM71A Missense_Mutation p.G518D 0.34 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A2ML-06 1 216138689 216138689 G A USH2A Missense_Mutation p.L2364F 0.36 benign(0.013) TCGA-EE-A2ML-06 1 22336293 22336293 C T CELA3A Silent p.F246F 0.30 TCGA-EE-A2ML-06 1 223568461 223568461 G A C1orf65 Silent p.L548L 0.28 TCGA-EE-A2ML-06 1 226413252 226413252 G A MIXL1 Silent p.G146G 0.35 TCGA-EE-A2ML-06 1 226827257 226827257 C A ITPKB Splice_Site p.X851_splice 0.16 TCGA-EE-A2ML-06 1 228005126 228005126 G A PRSS38 Silent p.V176V 0.55 TCGA-EE-A2ML-06 1 228238380 228238380 C T WNT3A Missense_Mutation p.H113Y 0.17 tolerated(0.5) benign(0.248) TCGA-EE-A2ML-06 1 230400986 230400986 G T GALNT2 Splice_Site p.X438_splice 0.33 TCGA-EE-A2ML-06 1 233511808 233511808 G A MLK4 Missense_Mutation p.E608K 0.30 deleterious(0.03) possibly_damaging(0.589) TCGA-EE-A2ML-06 1 240071792 240071792 G A CHRM3 Silent p.E347E 0.33 TCGA-EE-A2ML-06 1 240256867 240256867 G A FMN2 Silent p.T486T 0.36 TCGA-EE-A2ML-06 1 24077804 24077804 G A TCEB3 Missense_Mutation p.G263R 0.36 tolerated(0.11) benign(0.028) TCGA-EE-A2ML-06 1 244583515 244583515 G A ADSS Silent p.I249I 0.39 TCGA-EE-A2ML-06 1 247835968 247835968 G A OR13G1 Missense_Mutation p.P126S 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2ML-06 1 248004498 248004498 C T OR11L1 Missense_Mutation p.R234Q 0.34 tolerated(0.07) benign(0.045) TCGA-EE-A2ML-06 1 248436957 248436957 G A OR2T33 Missense_Mutation p.H54Y 0.18 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2ML-06 1 248512862 248512862 G A OR14C36 Silent p.A262A 0.31 TCGA-EE-A2ML-06 1 28800500 28800500 C T PHACTR4 Nonsense_Mutation p.R430* 0.34 TCGA-EE-A2ML-06 1 28835344 28835344 G A SNORA73B 3'Flank 0.20 TCGA-EE-A2ML-06 1 2938752 2938752 C T ACTRT2 Missense_Mutation p.P168S 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A2ML-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.24 TCGA-EE-A2ML-06 1 34285384 34285384 G A CSMD2 Silent p.S378S 0.38 TCGA-EE-A2ML-06 1 35370342 35370342 C T DLGAP3 Missense_Mutation p.G215S 0.43 tolerated(0.91) benign(0.001) TCGA-EE-A2ML-06 1 36292380 36292380 G A AGO4 Silent p.Q264Q 0.31 TCGA-EE-A2ML-06 1 38032389 38032389 G A DNALI1 3'UTR 0.24 TCGA-EE-A2ML-06 1 38032390 38032390 G A DNALI1 3'UTR 0.28 TCGA-EE-A2ML-06 1 40092660 40092660 G A HEYL Missense_Mutation p.P169L 0.27 tolerated(0.74) benign(0.004) TCGA-EE-A2ML-06 1 40092670 40092670 G C HEYL Missense_Mutation p.P166A 0.27 tolerated(1) benign(0.004) TCGA-EE-A2ML-06 1 42898933 42898933 G A ZMYND12 Missense_Mutation p.R286C 0.38 deleterious(0) possibly_damaging(0.513) TCGA-EE-A2ML-06 1 43779520 43779520 G A TIE1 Missense_Mutation p.A764T 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 1 43784918 43784918 G A TIE1 Missense_Mutation p.D979N 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2ML-06 1 49100233 49100233 G A AGBL4 Missense_Mutation p.P295S 0.36 tolerated(0.06) probably_damaging(1) TCGA-EE-A2ML-06 1 49202121 49202121 G A BEND5 Missense_Mutation p.H300Y 0.24 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A2ML-06 1 55472798 55472798 C T BSND Missense_Mutation p.P134L 0.27 deleterious(0) possibly_damaging(0.474) TCGA-EE-A2ML-06 1 55545290 55545290 G A USP24 Missense_Mutation p.P2374L 0.31 tolerated(0.06) benign(0.008) TCGA-EE-A2ML-06 1 57221585 57221585 G A C1orf168 Missense_Mutation p.P372S 0.25 tolerated(0.4) benign(0.146) TCGA-EE-A2ML-06 1 57257927 57257927 C T C1orf168 Missense_Mutation p.E187K 0.32 tolerated(0.18) benign(0.079) TCGA-EE-A2ML-06 1 6206355 6206355 G A CHD5 Silent p.P573P 0.35 TCGA-EE-A2ML-06 1 62676159 62676159 G A L1TD1 Silent p.K571K 0.29 TCGA-EE-A2ML-06 1 6634815 6634815 G A TAS1R1 Nonsense_Mutation p.W208* 0.37 TCGA-EE-A2ML-06 1 74507600 74507600 C T LRRIQ3 Missense_Mutation p.E339K 0.24 tolerated(0.06) benign(0.033) TCGA-EE-A2ML-06 1 74671320 74671320 T C FPGT Missense_Mutation p.V530A 0.28 tolerated(0.1) benign(0.17) TCGA-EE-A2ML-06 1 74701140 74701140 G A TNNI3K Intron 0.37 TCGA-EE-A2ML-06 1 75038901 75038901 G A C1orf173 Silent p.I831I 0.28 TCGA-EE-A2ML-06 1 77510200 77510200 C T ST6GALNAC5 Silent p.L191L 0.31 TCGA-EE-A2ML-06 1 85135375 85135375 A G SSX2IP Missense_Mutation p.S139P 0.24 deleterious(0.03) benign(0.189) TCGA-EE-A2ML-06 1 85405263 85405263 G A MCOLN2 Silent p.S361S 0.34 TCGA-EE-A2ML-06 1 94506778 94506778 C T ABCA4 Missense_Mutation p.R1170K 0.31 tolerated(1) benign(0) TCGA-EE-A2ML-06 20 14307111 14307111 G A FLRT3 Missense_Mutation p.L348F 0.32 deleterious(0.01) probably_damaging(0.924) TCGA-EE-A2ML-06 20 15480424 15480424 C T MACROD2 Missense_Mutation p.P193S 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 20 31685474 31685474 C T BPIFB4 Silent p.L484L 0.39 TCGA-EE-A2ML-06 20 32378973 32378973 A T ZNF341 Nonsense_Mutation p.K732* 0.27 TCGA-EE-A2ML-06 20 3673398 3673398 G A SIGLEC1 Missense_Mutation p.P1267L 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 20 43108797 43108797 G A TTPAL Nonsense_Mutation p.W53* 0.38 TCGA-EE-A2ML-06 20 43108798 43108798 G A TTPAL Nonsense_Mutation p.W53* 0.38 TCGA-EE-A2ML-06 20 47705915 47705915 C T CSE1L Silent p.I651I 0.27 TCGA-EE-A2ML-06 20 51870954 51870954 G T TSHZ2 Silent p.P319P 0.25 TCGA-EE-A2ML-06 20 54824426 54824426 G A MC3R Missense_Mutation p.G176D 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 20 5548169 5548169 G A GPCPD1 Missense_Mutation p.P396L 0.30 deleterious(0) probably_damaging(0.92) TCGA-EE-A2ML-06 20 57876515 57876515 C T EDN3 Nonsense_Mutation p.Q35* 0.28 TCGA-EE-A2ML-06 20 61143613 61143613 G A C20orf166 5'Flank 0.24 TCGA-EE-A2ML-06 20 62407230 62407230 G A ZBTB46 Silent p.L341L 0.29 TCGA-EE-A2ML-06 20 62871696 62871696 C T MYT1 Silent p.F1087F 0.24 TCGA-EE-A2ML-06 20 9495524 9495524 C T LAMP5 Missense_Mutation p.P9S 0.19 tolerated_low_confidence(0.91) benign(0) TCGA-EE-A2ML-06 20 9546830 9546830 C T PAK7 Missense_Mutation p.A398T 0.34 tolerated(0.24) probably_damaging(0.989) TCGA-EE-A2ML-06 21 10916422 10916422 G A TPTE Silent p.L408L 0.07 TCGA-EE-A2ML-06 21 10951345 10951345 G A TPTE Missense_Mutation p.P123S 0.12 tolerated(0.18) benign(0.046) TCGA-EE-A2ML-06 21 15524928 15524928 G A LIPI Nonsense_Mutation p.Q383* 0.26 TCGA-EE-A2ML-06 21 19713794 19713794 C T TMPRSS15 Silent p.G500G 0.37 TCGA-EE-A2ML-06 21 34958469 34958469 A C DONSON Missense_Mutation p.S141A 0.38 tolerated(0.51) benign(0.013) TCGA-EE-A2ML-06 21 41559882 41559882 G A DSCAM Silent p.F862F 0.31 TCGA-EE-A2ML-06 21 45503088 45503088 C T TRAPPC10 Missense_Mutation p.P715S 0.36 tolerated(0.48) benign(0.001) TCGA-EE-A2ML-06 21 47549380 47549380 C T COL6A2 Intron 0.19 TCGA-EE-A2ML-06 22 16449682 16449682 G A OR11H1 Silent p.F41F 0.13 TCGA-EE-A2ML-06 22 17443709 17443709 C T GAB4 Missense_Mutation p.E547K 0.30 deleterious(0.03) possibly_damaging(0.636) TCGA-EE-A2ML-06 22 18301313 18301313 G A MICAL3 Missense_Mutation p.P1372S 0.33 benign(0.005) TCGA-EE-A2ML-06 22 18304832 18304832 C T MICAL3 Missense_Mutation p.E1138K 0.23 benign(0.08) TCGA-EE-A2ML-06 22 23403994 23403994 G A RTDR1 Silent p.I261I 0.35 TCGA-EE-A2ML-06 22 25264699 25264699 T C SGSM1 Missense_Mutation p.F390L 0.31 deleterious(0.03) benign(0.156) TCGA-EE-A2ML-06 22 29837591 29837591 G A RFPL1 Missense_Mutation p.R145K 0.26 tolerated(0.15) benign(0.098) TCGA-EE-A2ML-06 22 29837592 29837592 G A RFPL1 Silent p.R145R 0.28 TCGA-EE-A2ML-06 22 30185011 30185011 G A ASCC2 Silent p.I755I 0.31 TCGA-EE-A2ML-06 22 30888480 30888480 C T SEC14L4 Silent p.R215R 0.38 TCGA-EE-A2ML-06 22 30891621 30891621 C T SEC14L4 Silent p.E61E 0.30 TCGA-EE-A2ML-06 22 31533697 31533697 C T PLA2G3 Silent p.Q355Q 0.29 TCGA-EE-A2ML-06 22 31655116 31655116 G A LIMK2 Missense_Mutation p.E67K 0.39 deleterious(0.02) possibly_damaging(0.596) TCGA-EE-A2ML-06 22 36886049 36886049 G A FOXRED2 3'UTR 0.38 TCGA-EE-A2ML-06 22 37771193 37771193 G A ELFN2 Missense_Mutation p.R128C 0.26 deleterious(0) probably_damaging(0.987) TCGA-EE-A2ML-06 22 41721867 41721867 C T ZC3H7B Missense_Mutation p.P77L 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 22 41864674 41864674 G A PHF5A 5'UTR 0.38 TCGA-EE-A2ML-06 22 43287005 43287005 G A PACSIN2 Missense_Mutation p.A134V 0.36 tolerated(0.1) possibly_damaging(0.834) TCGA-EE-A2ML-06 22 50906053 50906053 G A SBF1 Silent p.L116L 0.38 TCGA-EE-A2ML-06 2 100199407 100199407 G A AFF3 Silent p.P907P 0.29 TCGA-EE-A2ML-06 2 105915153 105915153 G A TGFBRAP1 Missense_Mutation p.A233V 0.30 tolerated(0.83) benign(0.146) TCGA-EE-A2ML-06 2 107423239 107423239 C T ST6GAL2 Silent p.L495L 0.35 TCGA-EE-A2ML-06 2 111542337 111542337 G A ACOXL Missense_Mutation p.R35Q 0.39 tolerated(0.41) benign(0.008) TCGA-EE-A2ML-06 2 112785928 112785928 G A MERTK Silent p.L829L 0.37 TCGA-EE-A2ML-06 2 119732103 119732103 C T MARCO Missense_Mutation p.S192L 0.29 tolerated(0.06) benign(0.007) TCGA-EE-A2ML-06 2 120194547 120194547 C T TMEM37 Missense_Mutation p.A35V 0.28 tolerated(0.05) possibly_damaging(0.846) TCGA-EE-A2ML-06 2 121747129 121747129 C T GLI2 Silent p.S1213S 0.36 TCGA-EE-A2ML-06 2 128699479 128699479 C T SAP130 3'UTR 0.31 TCGA-EE-A2ML-06 2 131099616 131099616 C T CCDC115 Missense_Mutation p.R28Q 0.20 tolerated(0.06) benign(0.304) TCGA-EE-A2ML-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.33 tolerated(0.66) probably_damaging(0.964) TCGA-EE-A2ML-06 2 138033582 138033582 G A THSD7B Missense_Mutation p.G829E 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2ML-06 2 141458040 141458040 C A LRP1B Missense_Mutation p.G2193V 0.33 probably_damaging(0.953) TCGA-EE-A2ML-06 2 141473590 141473590 G A LRP1B Missense_Mutation p.S1992F 0.27 possibly_damaging(0.788) TCGA-EE-A2ML-06 2 152497000 152497000 C T NEB Missense_Mutation p.V2852M 0.34 possibly_damaging(0.735) TCGA-EE-A2ML-06 2 15493708 15493708 A G NBAS Missense_Mutation p.L1353P 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A2ML-06 2 158142569 158142569 C T GALNT5 Missense_Mutation p.P555L 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 2 158300433 158300433 G A CYTIP Missense_Mutation p.L34F 0.36 tolerated(0.73) benign(0.003) TCGA-EE-A2ML-06 2 158300434 158300434 G A CYTIP Silent p.S33S 0.37 TCGA-EE-A2ML-06 2 176856982 176856982 G A KIAA1715 Silent p.L78L 0.16 TCGA-EE-A2ML-06 2 179516832 179516832 G A TTN Missense_Mutation p.P13096S 0.44 TCGA-EE-A2ML-06 2 179542444 179542444 G A TTN Missense_Mutation p.P11399S 0.34 TCGA-EE-A2ML-06 2 179569665 179569665 C T TTN Missense_Mutation p.R9878K 0.24 TCGA-EE-A2ML-06 2 179576810 179576810 C T TTN Silent p.T9249T 0.31 TCGA-EE-A2ML-06 2 179577529 179577529 C T TTN Missense_Mutation p.E9075K 0.36 TCGA-EE-A2ML-06 2 179592541 179592541 A T TTN Missense_Mutation p.D6588E 0.29 TCGA-EE-A2ML-06 2 179639084 179639084 C T TTN Missense_Mutation p.D2303N 0.19 TCGA-EE-A2ML-06 2 179641514 179641514 C T TTN Missense_Mutation p.D1693N 0.28 TCGA-EE-A2ML-06 2 179649008 179649008 A C TTN Missense_Mutation p.I855S 0.38 TCGA-EE-A2ML-06 2 182403898 182403898 C T CERKL Missense_Mutation p.D513N 0.42 tolerated(0.52) benign(0.002) TCGA-EE-A2ML-06 2 183582833 183582833 A T DNAJC10 Missense_Mutation p.K7I 0.23 deleterious_low_confidence(0) benign(0.406) TCGA-EE-A2ML-06 2 189859281 189859281 G A COL3A1 Silent p.K436K 0.35 TCGA-EE-A2ML-06 2 219754737 219754737 C T WNT10A Silent p.I136I 0.38 TCGA-EE-A2ML-06 2 228883992 228883992 C T SPHKAP Silent p.S526S 0.35 TCGA-EE-A2ML-06 2 230675852 230675852 C T TRIP12 Silent p.E637E 0.26 TCGA-EE-A2ML-06 2 230910822 230910822 G A SLC16A14 Silent p.I340I 0.31 TCGA-EE-A2ML-06 2 242195761 242195761 G A HDLBP Silent p.I237I 0.19 TCGA-EE-A2ML-06 2 242793385 242793385 C T PDCD1 Missense_Mutation p.R231Q 0.37 deleterious(0.02) possibly_damaging(0.806) TCGA-EE-A2ML-06 2 26534871 26534871 C T GPR113 Silent p.R575R 0.21 TCGA-EE-A2ML-06 2 28055587 28055587 G A RBKS Missense_Mutation p.T191I 0.29 tolerated(0.11) benign(0.084) TCGA-EE-A2ML-06 2 40657338 40657338 G A SLC8A1 Missense_Mutation p.S28F 0.39 tolerated_low_confidence(0.7) benign(0) TCGA-EE-A2ML-06 2 48050434 48050434 A G FBXO11 Silent p.A488A 0.35 TCGA-EE-A2ML-06 2 48897015 48897015 G A STON1-GTF2A1L Missense_Mutation p.G1082E 0.32 deleterious(0.02) benign(0.056) TCGA-EE-A2ML-06 2 54081898 54081898 G A GPR75 5'UTR 0.27 TCGA-EE-A2ML-06 2 71791275 71791275 C T DYSF Missense_Mutation p.L833F 0.26 deleterious(0.02) possibly_damaging(0.902) TCGA-EE-A2ML-06 2 74177814 74177814 C G DGUOK Missense_Mutation p.S182R 0.30 tolerated(0.18) benign(0.073) TCGA-EE-A2ML-06 2 85051299 85051299 G A TRABD2A Missense_Mutation p.P322L 0.33 tolerated(0.06) benign(0.168) TCGA-EE-A2ML-06 2 88327609 88327609 C T KRCC1 Silent p.Q158Q 0.31 TCGA-EE-A2ML-06 2 95480910 95480910 C T ANKRD20A8P RNA 0.34 TCGA-EE-A2ML-06 2 9595848 9595848 C T CPSF3 Missense_Mutation p.P522L 0.26 tolerated(0.1) benign(0.261) TCGA-EE-A2ML-06 2 98275872 98275872 C T ACTR1B Missense_Mutation p.M86I 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A2ML-06 2 99725409 99725409 G A TSGA10 Missense_Mutation p.R33C 0.26 tolerated(0.05) benign(0.207) TCGA-EE-A2ML-06 3 105271424 105271424 G A ALCAM Silent p.K553K 0.28 TCGA-EE-A2ML-06 3 107096770 107096770 G A CCDC54 Missense_Mutation p.M112I 0.32 tolerated(0.37) benign(0.051) TCGA-EE-A2ML-06 3 109019260 109019260 A T DPPA2 Missense_Mutation p.L293I 0.36 tolerated(0.06) benign(0.231) TCGA-EE-A2ML-06 3 11067563 11067563 G A SLC6A1 Splice_Site p.X318_splice 0.28 TCGA-EE-A2ML-06 3 112357285 112357285 C T CCDC80 Missense_Mutation p.E490K 0.30 tolerated(0.98) benign(0.045) TCGA-EE-A2ML-06 3 112357286 112357286 C T CCDC80 Silent p.K489K 0.29 TCGA-EE-A2ML-06 3 118865837 118865837 G A C3orf30 Silent p.R267R 0.19 TCGA-EE-A2ML-06 3 121340479 121340479 C T FBXO40 Missense_Mutation p.S68F 0.20 deleterious(0.01) possibly_damaging(0.906) TCGA-EE-A2ML-06 3 122056407 122056407 T C CSTA Missense_Mutation p.L27P 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 3 123367818 123367818 G A MYLK Missense_Mutation p.S1472F 0.32 deleterious(0) benign(0.164) TCGA-EE-A2ML-06 3 124456817 124456817 C T UMPS Missense_Mutation p.P238L 0.37 deleterious(0.01) benign(0.059) TCGA-EE-A2ML-06 3 124802814 124802814 C T SLC12A8 Missense_Mutation p.E689K 0.29 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2ML-06 3 12785412 12785412 C T TMEM40 Silent p.G96G 0.25 TCGA-EE-A2ML-06 3 130311917 130311917 G A COL6A6 Missense_Mutation p.E1462K 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-EE-A2ML-06 3 130368262 130368262 G A COL6A6 Silent p.T1863T 0.37 TCGA-EE-A2ML-06 3 131261456 131261456 C T CPNE4 Missense_Mutation p.G495E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 3 132440868 132440868 G C NPHP3 Missense_Mutation p.S111C 0.73 deleterious(0) benign(0.01) TCGA-EE-A2ML-06 3 133661584 133661584 C T SLCO2A1 Missense_Mutation p.G497E 0.19 tolerated(0.13) benign(0.098) TCGA-EE-A2ML-06 3 138402620 138402620 C T PIK3CB Silent p.K775K 0.28 TCGA-EE-A2ML-06 3 143371183 143371183 G A SLC9A9 Silent p.F223F 0.38 TCGA-EE-A2ML-06 3 154138913 154138913 C T GPR149 Missense_Mutation p.R513K 0.47 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A2ML-06 3 154878182 154878182 G A MME Nonsense_Mutation p.W535* 0.26 TCGA-EE-A2ML-06 3 154886390 154886390 C T MME Silent p.S630S 0.25 TCGA-EE-A2ML-06 3 160783293 160783293 C T PPM1L Missense_Mutation p.P226L 0.42 deleterious(0) possibly_damaging(0.72) TCGA-EE-A2ML-06 3 160952972 160952972 G A NMD3 Silent p.Q183Q 0.42 TCGA-EE-A2ML-06 3 169644379 169644379 G A SAMD7 Missense_Mutation p.R110K 0.48 tolerated(0.11) benign(0.023) TCGA-EE-A2ML-06 3 179316479 179316479 G A MRPL47 Missense_Mutation p.P129L 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A2ML-06 3 180377491 180377491 C T CCDC39 Missense_Mutation p.E195K 0.13 deleterious(0.02) benign(0.345) TCGA-EE-A2ML-06 3 18390941 18390941 G A SATB1 Silent p.D703D 0.28 TCGA-EE-A2ML-06 3 18390942 18390942 T G SATB1 Missense_Mutation p.D703A 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 3 186943152 186943152 G A MASP1 Silent p.F567F 0.45 TCGA-EE-A2ML-06 3 189456456 189456456 G A TP63 Missense_Mutation p.D73N 0.30 tolerated(0.05) benign(0.059) TCGA-EE-A2ML-06 3 193175233 193175233 C T ATP13A4 Missense_Mutation p.D566N 0.23 tolerated(0.15) benign(0.011) TCGA-EE-A2ML-06 3 194062946 194062946 C T CPN2 Silent p.R162R 0.38 TCGA-EE-A2ML-06 3 197238877 197238877 G A BDH1 Silent p.T307T 0.39 TCGA-EE-A2ML-06 3 197427665 197427665 C T KIAA0226 Silent p.Q360Q 0.19 TCGA-EE-A2ML-06 3 19947122 19947122 C T EFHB Missense_Mutation p.E470K 0.32 deleterious(0.01) benign(0.091) TCGA-EE-A2ML-06 3 24185134 24185134 C T THRB Missense_Mutation p.R199K 0.24 tolerated(0.43) benign(0.066) TCGA-EE-A2ML-06 3 30729980 30729980 C T TGFBR2 Missense_Mutation p.P526S 0.31 deleterious(0.03) possibly_damaging(0.562) TCGA-EE-A2ML-06 3 3085301 3085301 C T CNTN4 Silent p.I908I 0.28 TCGA-EE-A2ML-06 3 32932942 32932942 C T TRIM71 Missense_Mutation p.S749F 0.35 deleterious(0) probably_damaging(0.978) TCGA-EE-A2ML-06 3 33673818 33673818 A G CLASP2 Missense_Mutation p.F304S 0.39 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 3 38043243 38043243 G A VILL Silent p.E457E 0.35 TCGA-EE-A2ML-06 3 38888327 38888327 C T SCN11A Missense_Mutation p.R1745Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2ML-06 3 38892129 38892129 T C SCN11A Silent p.Q1390Q 0.26 TCGA-EE-A2ML-06 3 39226637 39226637 C T XIRP1 Missense_Mutation p.D1434N 0.41 tolerated_low_confidence(0.08) benign(0.009) TCGA-EE-A2ML-06 3 42955929 42955929 G A ZNF662 Missense_Mutation p.E148K 0.42 tolerated(0.16) benign(0.013) TCGA-EE-A2ML-06 3 43618707 43618707 T G ANO10 Silent p.G213G 0.17 TCGA-EE-A2ML-06 3 44441962 44441962 C T TCAIM Missense_Mutation p.P334L 0.28 deleterious(0.02) possibly_damaging(0.736) TCGA-EE-A2ML-06 3 48215944 48215944 T A CDC25A Missense_Mutation p.N254Y 0.29 deleterious(0) possibly_damaging(0.797) TCGA-EE-A2ML-06 3 48614433 48614433 C T COL7A1 Missense_Mutation p.G1854R 0.31 unknown(0) TCGA-EE-A2ML-06 3 49139286 49139286 C T QARS Silent p.G226G 0.40 TCGA-EE-A2ML-06 3 50256311 50256311 G A SLC38A3 RNA 0.18 TCGA-EE-A2ML-06 3 52426493 52426493 C T DNAH1 Nonsense_Mutation p.Q3356* 0.20 TCGA-EE-A2ML-06 3 56026138 56026138 C T ERC2 Silent p.K734K 0.40 TCGA-EE-A2ML-06 3 65350400 65350400 C A MAGI1 Missense_Mutation p.R1097S 0.34 tolerated(0.14) possibly_damaging(0.891) TCGA-EE-A2ML-06 3 7340399 7340399 A T GRM7 Missense_Mutation p.R255S 0.32 deleterious(0) benign(0.037) TCGA-EE-A2ML-06 3 7348240 7348240 G A GRM7 Missense_Mutation p.G312R 0.39 deleterious(0) probably_damaging(0.959) TCGA-EE-A2ML-06 3 7620766 7620766 C T GRM7 Missense_Mutation p.P725S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2ML-06 3 81586211 81586211 G A GBE1 Missense_Mutation p.P552S 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A2ML-06 3 97744496 97744496 A G GABRR3 RNA 0.25 TCGA-EE-A2ML-06 3 98506933 98506933 C T ST3GAL6 Missense_Mutation p.T162I 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 3 98506934 98506934 C T ST3GAL6 Silent p.T162T 0.22 TCGA-EE-A2ML-06 3 9934782 9934782 C T JAGN1 Silent p.S91S 0.42 TCGA-EE-A2ML-06 4 114823417 114823417 G A ARSJ 3'UTR 0.26 TCGA-EE-A2ML-06 4 115767017 115767017 G A NDST4 Missense_Mutation p.L693F 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2ML-06 4 120243201 120243201 C T FABP2 Missense_Mutation p.M19I 0.36 deleterious(0.01) benign(0.241) TCGA-EE-A2ML-06 4 122589631 122589631 C A ANXA5 Missense_Mutation p.D319Y 0.38 deleterious(0) possibly_damaging(0.637) TCGA-EE-A2ML-06 4 138442417 138442417 G A PCDH18 Silent p.A1058A 0.46 TCGA-EE-A2ML-06 4 138452990 138452990 C T PCDH18 Missense_Mutation p.E85K 0.26 tolerated(0.13) possibly_damaging(0.803) TCGA-EE-A2ML-06 4 145636561 145636561 G A HHIP Missense_Mutation p.G553R 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2ML-06 4 156135297 156135297 C T NPY2R Missense_Mutation p.S69F 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2ML-06 4 167713375 167713375 C T SPOCK3 Missense_Mutation p.E222K 0.26 tolerated(0.1) possibly_damaging(0.888) TCGA-EE-A2ML-06 4 169227533 169227533 C T DDX60 Nonsense_Mutation p.W201* 0.36 TCGA-EE-A2ML-06 4 169227534 169227534 C T DDX60 Nonsense_Mutation p.W201* 0.38 TCGA-EE-A2ML-06 4 175898526 175898526 A T ADAM29 Missense_Mutation p.H617L 0.40 tolerated(0.1) benign(0.017) TCGA-EE-A2ML-06 4 178881990 178881990 G A LINC01098 5'UTR 0.26 TCGA-EE-A2ML-06 4 183713602 183713602 C T TENM3 Missense_Mutation p.T1926M 0.29 tolerated(0.23) benign(0) TCGA-EE-A2ML-06 4 26483390 26483390 G A CCKAR Missense_Mutation p.P386L 0.19 tolerated(0.21) benign(0.028) TCGA-EE-A2ML-06 4 26483391 26483391 G A CCKAR Missense_Mutation p.P386S 0.21 tolerated(0.81) benign(0.001) TCGA-EE-A2ML-06 4 26483532 26483532 C T CCKAR Missense_Mutation p.D339N 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2ML-06 4 38016200 38016200 C T TBC1D1 Missense_Mutation p.S163F 0.37 deleterious(0.01) probably_damaging(0.909) TCGA-EE-A2ML-06 4 41621205 41621205 G A LIMCH1 Missense_Mutation p.G228E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 4 41686475 41686475 C T LIMCH1 Missense_Mutation p.H919Y 0.22 tolerated(0.42) benign(0) TCGA-EE-A2ML-06 4 42403086 42403086 T G SHISA3 Missense_Mutation p.L112R 0.39 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2ML-06 4 44638057 44638057 T A YIPF7 Silent p.S78S 0.25 TCGA-EE-A2ML-06 4 48545929 48545929 G A FRYL Silent p.S1829S 0.38 TCGA-EE-A2ML-06 4 49005952 49005952 G A CWH43 Missense_Mutation p.A335T 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 4 68472054 68472054 G A STAP1 Silent p.K289K 0.31 TCGA-EE-A2ML-06 4 70080530 70080530 C T UGT2B11 5'Flank 0.32 TCGA-EE-A2ML-06 4 70146570 70146570 G A UGT2B28 Missense_Mutation p.E118K 0.32 tolerated(0.44) benign(0.002) TCGA-EE-A2ML-06 4 74453578 74453578 C T RASSF6 Missense_Mutation p.E153K 0.19 tolerated(0.09) benign(0.013) TCGA-EE-A2ML-06 4 78792967 78792967 T G MRPL1 Missense_Mutation p.V34G 0.28 tolerated(0.21) benign(0.038) TCGA-EE-A2ML-06 4 8098853 8098853 G A ABLIM2 Missense_Mutation p.P104L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 4 84376745 84376745 G A HELQ Silent p.L34L 0.26 TCGA-EE-A2ML-06 4 85530642 85530642 G A CDS1 Silent p.L102L 0.25 TCGA-EE-A2ML-06 4 88533324 88533324 C T DSPP Missense_Mutation p.S40L 0.41 benign(0.028) TCGA-EE-A2ML-06 5 101834582 101834582 C T SLCO6A1 5'UTR 0.43 TCGA-EE-A2ML-06 5 110462456 110462456 G A WDR36 Missense_Mutation p.E911K 0.36 tolerated(0.26) possibly_damaging(0.474) TCGA-EE-A2ML-06 5 110819752 110819752 C T CAMK4 Missense_Mutation p.S337L 0.31 tolerated(0.07) possibly_damaging(0.844) TCGA-EE-A2ML-06 5 11098745 11098745 G A CTNND2 Missense_Mutation p.P860L 0.31 deleterious(0) possibly_damaging(0.885) TCGA-EE-A2ML-06 5 11117663 11117663 C T CTNND2 Missense_Mutation p.G726R 0.35 tolerated(0.11) probably_damaging(0.986) TCGA-EE-A2ML-06 5 112257926 112257926 C T REEP5 5'UTR 0.27 TCGA-EE-A2ML-06 5 112917322 112917322 C T YTHDC2 Missense_Mutation p.P1188L 0.33 tolerated(0.4) benign(0.003) TCGA-EE-A2ML-06 5 114499263 114499263 G A TRIM36 Missense_Mutation p.R84W 0.31 deleterious(0) probably_damaging(0.947) TCGA-EE-A2ML-06 5 1214133 1214133 C T SLC6A19 Silent p.S280S 0.24 TCGA-EE-A2ML-06 5 128983524 128983524 C T ADAMTS19 Silent p.L641L 0.31 TCGA-EE-A2ML-06 5 131728257 131728257 C T SLC22A5 Missense_Mutation p.S467F 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A2ML-06 5 131728258 131728258 C T SLC22A5 Silent p.S467S 0.42 TCGA-EE-A2ML-06 5 134347254 134347254 A G CATSPER3 Missense_Mutation p.M380V 0.24 tolerated(0.1) benign(0.006) TCGA-EE-A2ML-06 5 13811764 13811764 G A DNAH5 Missense_Mutation p.P2467S 0.31 benign(0.005) TCGA-EE-A2ML-06 5 13850770 13850770 G A DNAH5 Missense_Mutation p.S1702F 0.28 possibly_damaging(0.788) TCGA-EE-A2ML-06 5 140242367 140242367 G A AC005609.1 3'UTR 0.44 TCGA-EE-A2ML-06 5 140475055 140475055 G T PCDHB2 Silent p.T227T 0.31 TCGA-EE-A2ML-06 5 140503944 140503944 C T PCDHB4 Silent p.F788F 0.44 TCGA-EE-A2ML-06 5 140710915 140710915 C T PCDHGA1 Missense_Mutation p.R222C 0.50 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EE-A2ML-06 5 140768843 140768843 G A PCDHGB4 Silent p.P464P 0.32 TCGA-EE-A2ML-06 5 140855819 140855819 G A PCDHGC3 Missense_Mutation p.A46T 0.07 tolerated(0.16) benign(0.004) TCGA-EE-A2ML-06 5 147488359 147488359 G A SPINK5 Missense_Mutation p.G551R 0.28 tolerated(0.34) benign(0.062) TCGA-EE-A2ML-06 5 149914541 149914541 C T NDST1 Silent p.S403S 0.30 TCGA-EE-A2ML-06 5 150276484 150276484 G A ZNF300 Missense_Mutation p.S122F 0.34 tolerated(0.11) benign(0.01) TCGA-EE-A2ML-06 5 150436501 150436501 G A TNIP1 Silent p.P151P 0.37 TCGA-EE-A2ML-06 5 153054204 153054204 G A GRIA1 Missense_Mutation p.D292N 0.33 tolerated(0.38) benign(0.202) TCGA-EE-A2ML-06 5 154394524 154394524 C T KIF4B Missense_Mutation p.H369Y 0.38 tolerated(0.19) benign(0.397) TCGA-EE-A2ML-06 5 154395342 154395342 G A KIF4B Nonsense_Mutation p.W641* 0.33 TCGA-EE-A2ML-06 5 156676015 156676015 G A ITK Missense_Mutation p.E597K 0.29 deleterious(0.02) possibly_damaging(0.852) TCGA-EE-A2ML-06 5 156899636 156899636 T A NIPAL4 Missense_Mutation p.F357I 0.28 deleterious(0.05) probably_damaging(0.992) TCGA-EE-A2ML-06 5 167182018 167182018 G A TENM2 Intron 0.31 TCGA-EE-A2ML-06 5 167625888 167625888 C T TENM2 Silent p.S977S 0.29 TCGA-EE-A2ML-06 5 167675128 167675128 G A TENM2 Missense_Mutation p.G2395E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 5 169533456 169533456 C G FOXI1 Silent p.A165A 0.29 TCGA-EE-A2ML-06 5 175111210 175111210 C T HRH2 Missense_Mutation p.S325F 0.24 tolerated(0.06) benign(0.151) TCGA-EE-A2ML-06 5 175111211 175111211 C T HRH2 Silent p.S325S 0.24 TCGA-EE-A2ML-06 5 178417600 178417600 G A GRM6 Silent p.S335S 0.27 TCGA-EE-A2ML-06 5 35070327 35070327 C A PRLR Missense_Mutation p.S195I 0.23 deleterious(0) probably_damaging(0.923) TCGA-EE-A2ML-06 5 38482161 38482161 G A LIFR Missense_Mutation p.H944Y 0.27 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2ML-06 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.41 deleterious(0.03) probably_damaging(0.944) TCGA-EE-A2ML-06 5 43280373 43280373 G A NIM1K Missense_Mutation p.E285K 0.35 tolerated(0.08) benign(0.097) TCGA-EE-A2ML-06 5 73931133 73931133 A G ENC1 Missense_Mutation p.V393A 0.31 deleterious(0) possibly_damaging(0.679) TCGA-EE-A2ML-06 5 77412018 77412018 T C AP3B1 Missense_Mutation p.N670S 0.31 tolerated(0.23) benign(0.013) TCGA-EE-A2ML-06 5 79029836 79029836 G A CMYA5 Missense_Mutation p.G1750R 0.21 possibly_damaging(0.708) TCGA-EE-A2ML-06 5 79089359 79089359 C T CMYA5 Silent p.S3963S 0.34 TCGA-EE-A2ML-06 5 86703870 86703870 G A CCNH Missense_Mutation p.L150F 0.23 deleterious(0) probably_damaging(0.969) TCGA-EE-A2ML-06 5 93855919 93855919 G A KIAA0825 3'UTR 0.44 TCGA-EE-A2ML-06 6 100368967 100368967 G A MCHR2 Missense_Mutation p.S291F 0.33 tolerated(0.13) probably_damaging(0.943) TCGA-EE-A2ML-06 6 111688351 111688351 G T REV3L Missense_Mutation p.P2214T 0.48 tolerated(0.16) benign(0.038) TCGA-EE-A2ML-06 6 130762860 130762860 G A TMEM200A Missense_Mutation p.M431I 0.31 tolerated(0.83) benign(0) TCGA-EE-A2ML-06 6 132014660 132014660 C G ENPP3 Missense_Mutation p.F436L 0.34 deleterious(0.05) benign(0.4) TCGA-EE-A2ML-06 6 132021705 132021705 G A OR2A4 Silent p.L279L 0.27 TCGA-EE-A2ML-06 6 133072331 133072331 C T VNN2 Missense_Mutation p.G385R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 6 137325798 137325798 C T IL20RA Missense_Mutation p.R275Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-EE-A2ML-06 6 153073340 153073340 C T VIP Missense_Mutation p.L10F 0.27 deleterious(0.04) benign(0.028) TCGA-EE-A2ML-06 6 160679618 160679618 C T SLC22A2 Missense_Mutation p.E58K 0.22 deleterious(0.01) benign(0.165) TCGA-EE-A2ML-06 6 168281154 168281154 A T MLLT4 Missense_Mutation p.Y285F 0.34 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A2ML-06 6 169637409 169637409 G A THBS2 Missense_Mutation p.P445S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 6 24448199 24448199 G A GPLD1 Silent p.P528P 0.26 TCGA-EE-A2ML-06 6 24596214 24596214 G A KIAA0319 Missense_Mutation p.P230S 0.41 tolerated(0.47) benign(0.007) TCGA-EE-A2ML-06 6 26509342 26509342 G A BTN1A1 Silent p.R507R 0.27 TCGA-EE-A2ML-06 6 29080239 29080239 C T OR2J3 Missense_Mutation p.S191L 0.28 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2ML-06 6 29080300 29080300 C T OR2J3 Silent p.L211L 0.27 TCGA-EE-A2ML-06 6 32052376 32052376 C T TNXB Missense_Mutation p.G1087S 0.29 probably_damaging(0.999) TCGA-EE-A2ML-06 6 33408710 33408710 C T SYNGAP1 Silent p.A627A 0.22 TCGA-EE-A2ML-06 6 34499498 34499498 G A PACSIN1 Missense_Mutation p.G387R 0.31 deleterious(0.01) benign(0.172) TCGA-EE-A2ML-06 6 36168457 36168457 C T BRPF3 Missense_Mutation p.R120C 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2ML-06 6 36339258 36339258 G A ETV7 Silent p.F171F 0.24 TCGA-EE-A2ML-06 6 42797717 42797717 C T GLTSCR1L Missense_Mutation p.A549V 0.21 tolerated(0.38) benign(0.002) TCGA-EE-A2ML-06 6 43153772 43153772 C T CUL9 Missense_Mutation p.P277L 0.29 tolerated(0.33) probably_damaging(0.998) TCGA-EE-A2ML-06 6 43536447 43536447 C T XPO5 Splice_Site p.X216_splice 0.21 TCGA-EE-A2ML-06 6 43536448 43536448 C T XPO5 Silent p.K216K 0.22 TCGA-EE-A2ML-06 6 44344094 44344094 G A SPATS1 Splice_Site p.X253_splice 0.35 TCGA-EE-A2ML-06 6 50011425 50011425 C T DEFB112 Missense_Mutation p.E69K 0.29 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A2ML-06 6 51918863 51918863 C T PKHD1 Nonsense_Mutation p.W646* 0.25 TCGA-EE-A2ML-06 6 54806491 54806491 C T FAM83B Missense_Mutation p.P908S 0.36 tolerated(0.28) benign(0.007) TCGA-EE-A2ML-06 6 55147032 55147032 G A HCRTR2 Missense_Mutation p.R372Q 0.28 deleterious(0) probably_damaging(0.985) TCGA-EE-A2ML-06 6 56473809 56473809 G A DST Intron 0.31 TCGA-EE-A2ML-06 6 62611168 62611168 C A KHDRBS2 Missense_Mutation p.A198S 0.27 tolerated(0.35) benign(0.01) TCGA-EE-A2ML-06 6 73787095 73787095 G A KCNQ5 Missense_Mutation p.G223S 0.32 deleterious(0.03) possibly_damaging(0.629) TCGA-EE-A2ML-06 6 7584254 7584254 C T DSP Silent p.F2253F 0.31 TCGA-EE-A2ML-06 6 76022919 76022919 C T FILIP1 Missense_Mutation p.E877K 0.33 deleterious(0.01) benign(0.424) TCGA-EE-A2ML-06 6 88853983 88853983 C T CNR1 Missense_Mutation p.M337I 0.29 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A2ML-06 6 97610003 97610003 G A MMS22L Missense_Mutation p.P1087L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 7 100184195 100184195 G A FBXO24 5'Flank 0.57 TCGA-EE-A2ML-06 7 101870752 101870752 C T CUX1 Missense_Mutation p.P1090L 0.50 tolerated(0.23) unknown(0) TCGA-EE-A2ML-06 7 126173891 126173891 G A GRM8 Silent p.V515V 0.40 TCGA-EE-A2ML-06 7 138413516 138413516 C T ATP6V0A4 Missense_Mutation p.R667Q 0.33 tolerated(0.19) benign(0.015) TCGA-EE-A2ML-06 7 140301463 140301463 C T DENND2A Silent p.R245R 0.37 TCGA-EE-A2ML-06 7 142021150 142021150 C T TRBV5-1 Missense_Mutation p.P44S 0.26 deleterious(0.02) possibly_damaging(0.795) TCGA-EE-A2ML-06 7 142099569 142099569 C T TRBV7-8 Missense_Mutation p.G78E 0.32 tolerated(0.26) benign(0.1) TCGA-EE-A2ML-06 7 142180738 142180738 G A TRBV6-5 Nonsense_Mutation p.Q41* 0.08 TCGA-EE-A2ML-06 7 142630471 142630471 C T TRPV5 Nonsense_Mutation p.W29* 0.40 TCGA-EE-A2ML-06 7 143417118 143417118 C T FAM115C Silent p.S322S 0.16 TCGA-EE-A2ML-06 7 143417119 143417119 C T FAM115C Silent p.L323L 0.16 TCGA-EE-A2ML-06 7 143573471 143573471 G T FAM115A Silent p.L77L 0.41 TCGA-EE-A2ML-06 7 143657942 143657942 G A OR2F1 Silent p.R293R 0.31 TCGA-EE-A2ML-06 7 143747527 143747527 C T OR2A5 Silent p.F11F 0.28 TCGA-EE-A2ML-06 7 147926752 147926752 C T CNTNAP2 Nonsense_Mutation p.R1088* 0.50 TCGA-EE-A2ML-06 7 148112693 148112693 G A CNTNAP2 Silent p.K1327K 0.37 TCGA-EE-A2ML-06 7 148963740 148963740 G A ZNF783 Silent p.L113L 0.26 TCGA-EE-A2ML-06 7 148963741 148963741 G A ZNF783 Missense_Mutation p.E114K 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2ML-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.41 tolerated(0.95) benign(0) TCGA-EE-A2ML-06 7 154672628 154672628 G A DPP6 Silent p.R703R 0.26 TCGA-EE-A2ML-06 7 157926624 157926624 G A PTPRN2 Missense_Mutation p.S434F 0.34 tolerated(0.15) possibly_damaging(0.736) TCGA-EE-A2ML-06 7 2565089 2565089 G C LFNG Missense_Mutation p.R208P 0.31 tolerated(0.21) benign(0.018) TCGA-EE-A2ML-06 7 31904603 31904603 C T PDE1C Missense_Mutation p.D295N 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 7 38725159 38725159 A G FAM183B 3'UTR 0.37 TCGA-EE-A2ML-06 7 38725305 38725305 C T FAM183B Missense_Mutation p.D101N 0.32 tolerated(1) benign(0) TCGA-EE-A2ML-06 7 65553815 65553815 C T ASL Missense_Mutation p.S247L 0.29 deleterious(0) possibly_damaging(0.746) TCGA-EE-A2ML-06 7 73471739 73471739 G A ELN Intron 0.37 TCGA-EE-A2ML-06 7 75174449 75174449 G A HIP1 Missense_Mutation p.S866F 0.42 deleterious(0) probably_damaging(0.991) TCGA-EE-A2ML-06 7 82579822 82579822 G A PCLO Missense_Mutation p.A3361V 0.68 unknown(0) TCGA-EE-A2ML-06 7 87913151 87913151 C T STEAP4 Missense_Mutation p.G145E 0.55 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A2ML-06 7 92761312 92761312 C T SAMD9L Missense_Mutation p.E1325K 0.44 tolerated(0.81) benign(0.019) TCGA-EE-A2ML-06 7 98257757 98257757 G A NPTX2 Missense_Mutation p.G371E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2ML-06 7 99091874 99091874 G A ZNF394 Missense_Mutation p.H322Y 0.48 deleterious(0.03) benign(0.062) TCGA-EE-A2ML-06 7 99091875 99091875 G A ZNF394 Silent p.F321F 0.45 TCGA-EE-A2ML-06 8 101075873 101075873 C T RGS22 Missense_Mutation p.E375K 0.33 tolerated(0.42) benign(0.004) TCGA-EE-A2ML-06 8 105361478 105361478 G A DCSTAMP Missense_Mutation p.R233Q 0.32 deleterious(0.03) benign(0.077) TCGA-EE-A2ML-06 8 110394709 110394709 C T PKHD1L1 Missense_Mutation p.S109F 0.27 tolerated(0.11) possibly_damaging(0.878) TCGA-EE-A2ML-06 8 11606556 11606556 G A GATA4 Missense_Mutation p.G249S 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 8 124664923 124664923 G A KLHL38 Missense_Mutation p.P82S 0.22 tolerated(1) benign(0.021) TCGA-EE-A2ML-06 8 124822612 124822612 C T FAM91A1 Intron 0.22 TCGA-EE-A2ML-06 8 125520732 125520732 G A TATDN1 Missense_Mutation p.R167W 0.46 deleterious(0) probably_damaging(0.971) TCGA-EE-A2ML-06 8 126071759 126071759 G A KIAA0196 Missense_Mutation p.S516F 0.12 deleterious(0.01) possibly_damaging(0.484) TCGA-EE-A2ML-06 8 139263132 139263132 G A FAM135B Missense_Mutation p.S165L 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A2ML-06 8 143570778 143570778 C G BAI1 Missense_Mutation p.I870M 0.26 deleterious(0) possibly_damaging(0.767) TCGA-EE-A2ML-06 8 144942406 144942406 G A EPPK1 Silent p.I1672I 0.39 TCGA-EE-A2ML-06 8 144992922 144992922 C T PLEC Silent p.T3826T 0.28 TCGA-EE-A2ML-06 8 145584131 145584131 C T SLC52A2 Silent p.L327L 0.31 TCGA-EE-A2ML-06 8 146112289 146112289 T C ZNF250 Splice_Site p.X100_splice 0.35 TCGA-EE-A2ML-06 8 15998534 15998534 G A MSR1 Intron 0.35 TCGA-EE-A2ML-06 8 17796417 17796417 T G PCM1 Missense_Mutation p.C171G 0.35 tolerated(0.56) benign(0.004) TCGA-EE-A2ML-06 8 22175740 22175740 G A PIWIL2 Silent p.V785V 0.29 TCGA-EE-A2ML-06 8 24304772 24304772 C T ADAM7 Missense_Mutation p.S77F 0.39 deleterious(0) probably_damaging(0.975) TCGA-EE-A2ML-06 8 25341639 25341639 C T CDCA2 Silent p.F426F 0.37 TCGA-EE-A2ML-06 8 27151620 27151620 C T TRIM35 Missense_Mutation p.E247K 0.22 tolerated(0.14) benign(0.105) TCGA-EE-A2ML-06 8 27151621 27151621 C T TRIM35 Silent p.K246K 0.23 TCGA-EE-A2ML-06 8 28574593 28574593 G C EXTL3 Silent p.R339R 0.45 TCGA-EE-A2ML-06 8 37986355 37986355 C T ASH2L Silent p.S471S 0.29 TCGA-EE-A2ML-06 8 39626920 39626920 C T ADAM2 Silent p.G401G 0.41 TCGA-EE-A2ML-06 8 41792152 41792152 G A KAT6A Missense_Mutation p.P1196S 0.32 benign(0.012) TCGA-EE-A2ML-06 8 52320808 52320808 G A PXDNL Missense_Mutation p.L1126F 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 8 63659497 63659497 G A NKAIN3 Missense_Mutation p.D94N 0.24 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A2ML-06 8 65527590 65527590 G A CYP7B1 Silent p.I350I 0.38 TCGA-EE-A2ML-06 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.30 deleterious(0.01) benign(0.024) TCGA-EE-A2ML-06 8 87242404 87242404 G A SLC7A13 Missense_Mutation p.P35S 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2ML-06 8 87242405 87242405 G A SLC7A13 Silent p.S34S 0.42 TCGA-EE-A2ML-06 8 88249250 88249250 C T CNBD1 Silent p.F227F 0.35 TCGA-EE-A2ML-06 8 95262456 95262456 A G GEM 3'UTR 0.29 TCGA-EE-A2ML-06 9 109690165 109690165 C T ZNF462 Silent p.P1324P 0.57 TCGA-EE-A2ML-06 9 112030709 112030709 C T EPB41L4B Nonsense_Mutation p.W139* 0.67 TCGA-EE-A2ML-06 9 113170678 113170678 C T SVEP1 Missense_Mutation p.G2401E 0.52 probably_damaging(1) TCGA-EE-A2ML-06 9 119158841 119158841 C T PAPPA Silent p.D1610D 0.38 TCGA-EE-A2ML-06 9 119158869 119158869 G A PAPPA Missense_Mutation p.D1620N 0.35 tolerated(0.16) possibly_damaging(0.539) TCGA-EE-A2ML-06 9 124530806 124530806 C T DAB2IP Missense_Mutation p.P570L 0.54 tolerated(0.54) probably_damaging(0.999) TCGA-EE-A2ML-06 9 125316390 125316390 G A OR1N2 Missense_Mutation p.M314I 0.47 tolerated(0.19) benign(0.001) TCGA-EE-A2ML-06 9 127923119 127923119 C G PPP6C Splice_Site p.X116_splice 0.57 TCGA-EE-A2ML-06 9 128086088 128086088 C T GAPVD1 Missense_Mutation p.R582C 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2ML-06 9 18753299 18753299 G A ADAMTSL1 Nonsense_Mutation p.W670* 0.44 TCGA-EE-A2ML-06 9 36083446 36083446 C T RECK Missense_Mutation p.P175L 0.40 deleterious(0) possibly_damaging(0.731) TCGA-EE-A2ML-06 9 43626910 43626910 T A SPATA31A6 Nonsense_Mutation p.R593* 0.26 TCGA-EE-A2ML-06 9 77339520 77339520 C T TRPM6 3'UTR 0.38 TCGA-EE-A2ML-06 9 77377626 77377626 C T TRPM6 Missense_Mutation p.E1321K 0.38 tolerated_low_confidence(0.12) benign(0.014) TCGA-EE-A2ML-06 9 79259754 79259754 C T PRUNE2 Missense_Mutation p.E2877K 0.54 deleterious(0) probably_damaging(0.99) TCGA-EE-A2ML-06 9 79318902 79318902 G A PRUNE2 Missense_Mutation p.R2543C 0.51 tolerated(0.08) benign(0.394) TCGA-EE-A2ML-06 9 8492971 8492971 G A PTPRD Silent p.I786I 0.52 TCGA-EE-A2ML-06 X 107821328 107821328 C T COL4A5 Silent p.F222F 0.86 TCGA-EE-A2ML-06 X 108708565 108708565 G A GUCY2F Missense_Mutation p.P280S 0.69 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2ML-06 X 127186107 127186107 C T ACTRT1 Missense_Mutation p.G27R 0.80 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2ML-06 X 130218228 130218228 G A ARHGAP36 Missense_Mutation p.G199R 0.70 deleterious(0.01) benign(0.253) TCGA-EE-A2ML-06 X 135427792 135427792 G A GPR112 Missense_Mutation p.D643N 0.66 deleterious(0.01) benign(0.153) TCGA-EE-A2ML-06 X 135469928 135469928 G A GPR112 Silent p.G2602G 0.79 TCGA-EE-A2ML-06 X 140994718 140994718 C T MAGEC1 Missense_Mutation p.P510S 0.68 tolerated_low_confidence(0.38) possibly_damaging(0.641) TCGA-EE-A2ML-06 X 151092719 151092719 C T MAGEA4 Nonsense_Mutation p.Q195* 0.68 TCGA-EE-A2ML-06 X 152612329 152612329 G A ZNF275 Silent p.Q62Q 0.43 TCGA-EE-A2ML-06 X 152612330 152612330 G A ZNF275 Missense_Mutation p.E63K 0.43 tolerated(0.18) benign(0.018) TCGA-EE-A2ML-06 X 41198307 41198307 C T DDX3X Missense_Mutation p.P41L 0.50 deleterious(0) benign(0.002) TCGA-EE-A2ML-06 X 47106620 47106620 G A USP11 Missense_Mutation p.R850Q 0.57 deleterious(0.03) benign(0.329) TCGA-EE-A2ML-06 X 47466579 47466579 C T SYN1 Silent p.G132G 0.77 TCGA-EE-A2ML-06 X 50163489 50163489 C T DGKK RNA 0.69 TCGA-EE-A2ML-06 X 53117121 53117121 A T TSPYL2 Nonstop_Mutation p.*694Yext*115 0.76 TCGA-EE-A2ML-06 X 57405110 57405110 C T FAAH2 Missense_Mutation p.P257S 0.73 deleterious(0) probably_damaging(0.995) TCGA-EE-A2ML-06 X 63410946 63410946 G A AMER1 Missense_Mutation p.P741S 0.86 deleterious(0.02) benign(0.052) TCGA-EE-A2ML-06 X 63574714 63574714 C G MTMR8 Silent p.G137G 0.62 TCGA-EE-A2ML-06 X 71822083 71822083 G A PHKA1 Silent p.I986I 0.55 TCGA-EE-A2ML-06 X 79985494 79985494 C T BRWD3 Missense_Mutation p.D385N 0.58 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MM-06 10 102108102 102108102 G A SCD Nonsense_Mutation p.W103* 0.92 TCGA-EE-A2MM-06 10 104175863 104175863 G A PSD Missense_Mutation p.S223F 1.00 tolerated_low_confidence(0.7) benign(0) TCGA-EE-A2MM-06 10 120354745 120354745 C T PRLHR Silent p.S4S 0.34 TCGA-EE-A2MM-06 10 123239265 123239265 C T FGFR2 3'Flank 0.88 TCGA-EE-A2MM-06 10 123843207 123843207 G A TACC2 Missense_Mutation p.E398K 0.85 benign(0.004) TCGA-EE-A2MM-06 10 124008655 124008655 G A TACC2 Missense_Mutation p.E2882K 0.96 probably_damaging(0.999) TCGA-EE-A2MM-06 10 124380647 124380647 C T DMBT1 Nonsense_Mutation p.R1658* 0.88 TCGA-EE-A2MM-06 10 134628230 134628230 G A TTC40 Silent p.I2403I 0.83 TCGA-EE-A2MM-06 10 21101828 21101828 G A NEBL Silent p.G796G 0.60 TCGA-EE-A2MM-06 10 48387882 48387882 T G RBP3 Missense_Mutation p.K999T 0.88 deleterious(0.02) benign(0.403) TCGA-EE-A2MM-06 10 50531118 50531118 C T C10orf71 Silent p.F176F 0.74 TCGA-EE-A2MM-06 10 61802497 61802497 C T ANK3 Silent p.V4362V 0.88 TCGA-EE-A2MM-06 10 61932940 61932940 C T ANK3 Missense_Mutation p.G730E 0.93 probably_damaging(1) TCGA-EE-A2MM-06 10 62021631 62021631 C T ANK3 Missense_Mutation p.D262N 0.88 probably_damaging(0.917) TCGA-EE-A2MM-06 10 73826742 73826742 G A SPOCK2 Silent p.I282I 0.86 TCGA-EE-A2MM-06 10 75407723 75407723 C T SYNPO2L Missense_Mutation p.G563R 0.87 deleterious(0.05) benign(0.426) TCGA-EE-A2MM-06 10 82033531 82033531 C T MAT1A 3'UTR 0.93 TCGA-EE-A2MM-06 10 88759265 88759265 C T RP11-96C23.14 RNA 0.94 TCGA-EE-A2MM-06 10 99696013 99696013 C T CRTAC1 Missense_Mutation p.G112E 0.80 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MM-06 11 100095439 100095439 G A CNTN5 Missense_Mutation p.D634N 0.81 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 11 10527309 10527309 G A AMPD3 Missense_Mutation p.D737N 0.42 tolerated(0.08) benign(0.063) TCGA-EE-A2MM-06 11 106558296 106558296 G A GUCY1A2 Silent p.F757F 0.62 TCGA-EE-A2MM-06 11 118211283 118211283 C T CD3D Silent p.E27E 0.76 TCGA-EE-A2MM-06 11 123900907 123900907 C T OR10G8 Missense_Mutation p.A193V 0.83 tolerated(0.92) benign(0.009) TCGA-EE-A2MM-06 11 16036520 16036520 A C SOX6 Missense_Mutation p.V567G 0.50 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A2MM-06 11 17482058 17482058 C T ABCC8 Missense_Mutation p.E330K 0.45 tolerated(0.36) benign(0.029) TCGA-EE-A2MM-06 11 19251216 19251216 C A E2F8 Missense_Mutation p.D560Y 0.51 deleterious(0.01) possibly_damaging(0.594) TCGA-EE-A2MM-06 11 20629177 20629177 G A SLC6A5 Missense_Mutation p.D322N 0.54 tolerated(0.09) benign(0.209) TCGA-EE-A2MM-06 11 2433482 2433482 C T TRPM5 Missense_Mutation p.G786D 0.37 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A2MM-06 11 26582726 26582726 C T MUC15 Silent p.G324G 0.63 TCGA-EE-A2MM-06 11 30034137 30034137 C T KCNA4 Missense_Mutation p.R30Q 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MM-06 11 34118216 34118216 C T CAPRIN1 Silent p.F632F 0.38 TCGA-EE-A2MM-06 11 4156462 4156462 G A RRM1 Missense_Mutation p.G718S 0.44 tolerated_low_confidence(0.16) benign(0.017) TCGA-EE-A2MM-06 11 4661965 4661965 C T OR51D1 Silent p.V315V 0.83 TCGA-EE-A2MM-06 11 48266760 48266760 C T OR4X2 Silent p.F35F 0.47 TCGA-EE-A2MM-06 11 48267238 48267238 G A OR4X2 Missense_Mutation p.G195R 0.54 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MM-06 11 55594865 55594865 C T OR5L2 Silent p.T57T 0.41 TCGA-EE-A2MM-06 11 55761282 55761282 C T OR5F1 Missense_Mutation p.A274T 0.31 tolerated(0.05) benign(0.03) TCGA-EE-A2MM-06 11 56757116 56757116 C T OR5AK2 Missense_Mutation p.S243F 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MM-06 11 56950114 56950114 C T LRRC55 Silent p.P249P 0.40 TCGA-EE-A2MM-06 11 57367645 57367645 C G SERPING1 Silent p.T115T 0.37 TCGA-EE-A2MM-06 11 57367646 57367646 C T SERPING1 Nonsense_Mutation p.Q116* 0.38 TCGA-EE-A2MM-06 11 57947582 57947582 C T OR9Q1 Silent p.I222I 0.42 TCGA-EE-A2MM-06 11 57982533 57982533 C T OR1S1 Missense_Mutation p.S106F 0.37 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MM-06 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.50 tolerated(1) benign(0) TCGA-EE-A2MM-06 11 60705425 60705425 G A SLC15A3 Missense_Mutation p.S503L 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 11 65622828 65622828 G A CFL1 Silent p.S160S 0.68 TCGA-EE-A2MM-06 11 68312380 68312380 C T PPP6R3 Missense_Mutation p.S101F 0.37 deleterious(0) benign(0.132) TCGA-EE-A2MM-06 11 76886426 76886426 C T MYO7A Silent p.L701L 0.23 TCGA-EE-A2MM-06 11 76924905 76924905 G A MYO7A Missense_Mutation p.D2147N 0.44 deleterious(0) benign(0.397) TCGA-EE-A2MM-06 11 8159847 8159847 G A RIC3 Silent p.A133A 0.42 TCGA-EE-A2MM-06 11 85437466 85437466 G A SYTL2 Missense_Mutation p.P12S 0.35 deleterious_low_confidence(0.01) benign(0.036) TCGA-EE-A2MM-06 11 86158109 86158109 C T ME3 Missense_Mutation p.E460K 0.31 tolerated(0.48) benign(0.019) TCGA-EE-A2MM-06 11 87032268 87032268 C T TMEM135 Missense_Mutation p.L424F 0.24 deleterious(0) possibly_damaging(0.666) TCGA-EE-A2MM-06 11 92526050 92526050 G A FAT3 Missense_Mutation p.E1577K 0.31 probably_damaging(1) TCGA-EE-A2MM-06 11 9989952 9989952 G A SBF2 Silent p.N512N 0.48 TCGA-EE-A2MM-06 12 108603912 108603912 G A WSCD2 Missense_Mutation p.G171D 0.44 deleterious(0) benign(0.005) TCGA-EE-A2MM-06 12 111353546 111353546 C T MYL2 Missense_Mutation p.D48N 0.42 deleterious(0.04) benign(0.395) TCGA-EE-A2MM-06 12 111785947 111785947 G A CUX2 Missense_Mutation p.A1427T 0.47 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A2MM-06 12 112846077 112846077 G A RPL6 Silent p.N101N 0.50 TCGA-EE-A2MM-06 12 113830561 113830561 C T SDS 3'UTR 0.43 TCGA-EE-A2MM-06 12 117402562 117402562 C T FBXW8 Silent p.F246F 0.42 TCGA-EE-A2MM-06 12 121471506 121471506 C T OASL Missense_Mutation p.R80K 0.39 tolerated(0.07) benign(0.001) TCGA-EE-A2MM-06 12 122691326 122691326 G A B3GNT4 Silent p.R176R 0.36 TCGA-EE-A2MM-06 12 126139164 126139164 G A TMEM132B Missense_Mutation p.D1049N 0.63 deleterious(0.02) possibly_damaging(0.849) TCGA-EE-A2MM-06 12 131620641 131620641 G A GPR133 Missense_Mutation p.G776D 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 12 13906748 13906748 G A GRIN2B Silent p.I171I 0.81 TCGA-EE-A2MM-06 12 18691166 18691166 C T PIK3C2G Nonsense_Mutation p.Q1093* 0.33 TCGA-EE-A2MM-06 12 32994096 32994096 G A PKP2 Silent p.L518L 0.49 TCGA-EE-A2MM-06 12 43769272 43769272 C T ADAMTS20 Missense_Mutation p.E1786K 0.41 tolerated(0.32) benign(0.001) TCGA-EE-A2MM-06 12 4736484 4736484 G A AKAP3 Silent p.I528I 0.89 TCGA-EE-A2MM-06 12 49391257 49391257 G A DDN Missense_Mutation p.P468S 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MM-06 12 52711714 52711714 C T KRT83 Missense_Mutation p.E212K 0.47 deleterious(0.01) benign(0.44) TCGA-EE-A2MM-06 12 52913684 52913684 G A KRT5 Missense_Mutation p.P133S 0.46 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2MM-06 12 56427047 56427047 C T IKZF4 Silent p.I313I 0.39 TCGA-EE-A2MM-06 12 56428417 56428417 G A IKZF4 Missense_Mutation p.E354K 0.38 deleterious(0.02) probably_damaging(0.956) TCGA-EE-A2MM-06 12 56625305 56625305 G A SLC39A5 Missense_Mutation p.G83R 0.44 tolerated(0.72) possibly_damaging(0.851) TCGA-EE-A2MM-06 12 57346775 57346775 C T RDH16 Splice_Site p.X191_splice 0.36 TCGA-EE-A2MM-06 12 57585108 57585108 C T LRP1 Silent p.I2414I 0.48 TCGA-EE-A2MM-06 12 57957968 57957968 G A KIF5A Missense_Mutation p.M123I 0.36 deleterious(0) benign(0.188) TCGA-EE-A2MM-06 12 58126232 58126232 G A AGAP2 Missense_Mutation p.P583L 0.27 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MM-06 12 58204681 58204681 C T AVIL Missense_Mutation p.R159Q 0.39 tolerated(0.2) benign(0.006) TCGA-EE-A2MM-06 12 70049528 70049528 T A BEST3 Missense_Mutation p.H389L 0.30 tolerated(0.4) benign(0.066) TCGA-EE-A2MM-06 12 71029730 71029730 C T PTPRB Missense_Mutation p.E58K 0.80 tolerated_low_confidence(0.21) benign(0.075) TCGA-EE-A2MM-06 12 72956724 72956724 G A TRHDE Missense_Mutation p.G604E 0.48 tolerated(0.97) benign(0.053) TCGA-EE-A2MM-06 12 7531660 7531660 C T CD163L1 Missense_Mutation p.G762E 0.75 tolerated(0.39) benign(0.001) TCGA-EE-A2MM-06 12 8327021 8327021 G A ZNF705A Missense_Mutation p.E38K 0.39 deleterious(0) possibly_damaging(0.874) TCGA-EE-A2MM-06 12 85441190 85441190 G A LRRIQ1 Missense_Mutation p.R207Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MM-06 12 8995863 8995863 C A A2ML1 Missense_Mutation p.P461H 0.81 tolerated(0.12) possibly_damaging(0.56) TCGA-EE-A2MM-06 12 8995864 8995864 C T A2ML1 Silent p.P461P 0.79 TCGA-EE-A2MM-06 13 109318440 109318440 C T MYO16 Missense_Mutation p.H57Y 0.33 deleterious(0) benign(0.418) TCGA-EE-A2MM-06 13 110859775 110859775 C T COL4A1 Missense_Mutation p.G252E 0.35 unknown(0) TCGA-EE-A2MM-06 13 113803660 113803660 C T F10 Silent p.F432F 0.32 TCGA-EE-A2MM-06 13 32340124 32340124 C T RXFP2 Missense_Mutation p.P153S 0.60 tolerated(0.26) benign(0.009) TCGA-EE-A2MM-06 13 38934949 38934949 G T UFM1 3'UTR 0.38 TCGA-EE-A2MM-06 13 70681651 70681651 C T KLHL1 Missense_Mutation p.E61K 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.472) TCGA-EE-A2MM-06 13 97485349 97485349 G A HS6ST3 Missense_Mutation p.R438Q 0.32 tolerated(0.06) possibly_damaging(0.75) TCGA-EE-A2MM-06 13 99356675 99356675 C T SLC15A1 Missense_Mutation p.M428I 0.64 tolerated(0.42) benign(0.001) TCGA-EE-A2MM-06 14 102442131 102442131 C T DYNC1H1 Silent p.S113S 0.41 TCGA-EE-A2MM-06 14 102508412 102508412 C T DYNC1H1 Silent p.V4055V 0.34 TCGA-EE-A2MM-06 14 102549295 102549295 G A HSP90AA1 Intron 0.47 TCGA-EE-A2MM-06 14 103600051 103600051 C T TNFAIP2 Silent p.L578L 0.42 TCGA-EE-A2MM-06 14 105408194 105408194 G A AHNAK2 Missense_Mutation p.P4532S 0.52 possibly_damaging(0.537) TCGA-EE-A2MM-06 14 22038596 22038596 G A OR10G3 Missense_Mutation p.P94S 0.35 tolerated(1) benign(0.003) TCGA-EE-A2MM-06 14 22508931 22508931 C A TRAV20 Missense_Mutation p.A8E 0.38 tolerated(0.07) benign(0.271) TCGA-EE-A2MM-06 14 22574082 22574082 G A TRAV24 Missense_Mutation p.G101E 0.46 deleterious(0.05) possibly_damaging(0.628) TCGA-EE-A2MM-06 14 26949268 26949268 C T NOVA1 Missense_Mutation p.R121Q 0.46 deleterious(0.01) unknown(0) TCGA-EE-A2MM-06 14 38723763 38723763 C T CLEC14A Missense_Mutation p.D489N 0.53 tolerated_low_confidence(0.09) benign(0.027) TCGA-EE-A2MM-06 14 39650092 39650092 T C PNN Silent p.V393V 0.40 TCGA-EE-A2MM-06 14 52505568 52505568 G A NID2 Silent p.F718F 0.37 TCGA-EE-A2MM-06 14 55818286 55818286 C T FBXO34 Missense_Mutation p.S393L 0.64 tolerated(0.09) benign(0.001) TCGA-EE-A2MM-06 14 56078982 56078982 C T KTN1 Silent p.L72L 0.39 TCGA-EE-A2MM-06 14 69346820 69346820 G A ACTN1 Silent p.I713I 0.33 TCGA-EE-A2MM-06 14 71209197 71209197 G A MAP3K9 Silent p.L480L 0.41 TCGA-EE-A2MM-06 14 74516885 74516885 G A CCDC176 Missense_Mutation p.E425K 0.36 deleterious(0.02) possibly_damaging(0.885) TCGA-EE-A2MM-06 14 92136247 92136247 G A CATSPERB Missense_Mutation p.P400S 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 14 92278779 92278779 C T TC2N Missense_Mutation p.D60N 0.46 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MM-06 14 94845850 94845850 C T SERPINA1 Missense_Mutation p.G339E 0.54 tolerated(1) benign(0.008) TCGA-EE-A2MM-06 14 95054219 95054219 G A SERPINA5 Missense_Mutation p.D174N 0.43 tolerated(0.09) benign(0.425) TCGA-EE-A2MM-06 15 100801778 100801778 C T ADAMTS17 Missense_Mutation p.E313K 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2MM-06 15 102182638 102182638 G A TM2D3 3'UTR 0.49 TCGA-EE-A2MM-06 15 22368842 22368842 G A OR4M2 Silent p.R89R 0.18 TCGA-EE-A2MM-06 15 22369401 22369401 T C OR4M2 Missense_Mutation p.F276L 0.45 tolerated(0.18) benign(0.229) TCGA-EE-A2MM-06 15 22473351 22473351 C T IGHV4OR15-8 Translation_Start_Site p.M1? 0.20 deleterious(0.01) possibly_damaging(0.642) TCGA-EE-A2MM-06 15 22855265 22855265 G A TUBGCP5 Missense_Mutation p.E576K 0.42 tolerated(0.1) benign(0.018) TCGA-EE-A2MM-06 15 23412198 23412198 C T RP11-467N20.5 Missense_Mutation p.G87S 0.40 probably_damaging(0.955) TCGA-EE-A2MM-06 15 24921102 24921102 C T NPAP1 Missense_Mutation p.R30W 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-EE-A2MM-06 15 24921709 24921709 C T NPAP1 Missense_Mutation p.S232F 0.37 tolerated(0.06) possibly_damaging(0.515) TCGA-EE-A2MM-06 15 43489561 43489561 A T EPB42 Missense_Mutation p.M702K 0.50 tolerated(0.29) benign(0.373) TCGA-EE-A2MM-06 15 43641199 43641199 C T ADAL Missense_Mutation p.S216F 0.54 tolerated(0.05) benign(0.049) TCGA-EE-A2MM-06 15 50168577 50168577 C T ATP8B4 Silent p.G975G 0.80 TCGA-EE-A2MM-06 15 51217358 51217358 C T AP4E1 Missense_Mutation p.P162S 0.57 tolerated(0.14) probably_damaging(0.967) TCGA-EE-A2MM-06 15 52258202 52258202 C T LEO1 Silent p.Q186Q 0.39 TCGA-EE-A2MM-06 15 59500206 59500206 A G LDHAL6B Missense_Mutation p.K356R 0.33 tolerated(0.15) possibly_damaging(0.608) TCGA-EE-A2MM-06 15 62359860 62359860 G A C2CD4A Silent p.R16R 0.47 TCGA-EE-A2MM-06 15 65110472 65110472 G A PIF1 Silent p.F504F 0.47 TCGA-EE-A2MM-06 15 67073794 67073794 G A SMAD6 Missense_Mutation p.G471D 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 15 75189490 75189490 G A MPI Missense_Mutation p.R328Q 0.37 tolerated(0.94) benign(0.009) TCGA-EE-A2MM-06 15 75687134 75687134 C T SIN3A Missense_Mutation p.E722K 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MM-06 15 78562890 78562890 G A DNAJA4 Missense_Mutation p.D91N 0.41 deleterious(0.04) benign(0.014) TCGA-EE-A2MM-06 15 79750337 79750337 C T KIAA1024 Silent p.V616V 0.51 TCGA-EE-A2MM-06 15 81172080 81172080 G A KIAA1199 Missense_Mutation p.D89N 0.38 tolerated(0.53) benign(0.009) TCGA-EE-A2MM-06 15 86807702 86807702 C T AGBL1 Missense_Mutation p.P388S 0.50 tolerated(0.19) benign(0.004) TCGA-EE-A2MM-06 15 89074080 89074080 G A DET1 Missense_Mutation p.P297L 0.52 deleterious(0.04) benign(0.247) TCGA-EE-A2MM-06 15 90892289 90892289 C T GABARAPL3 Silent p.R47R 0.25 TCGA-EE-A2MM-06 15 93007625 93007625 C T ST8SIA2 3'UTR 0.54 TCGA-EE-A2MM-06 15 95022245 95022245 G A MCTP2 Silent p.K873K 0.40 TCGA-EE-A2MM-06 16 11362926 11362926 G A TNP2 Missense_Mutation p.S65L 0.38 tolerated(0.35) possibly_damaging(0.637) TCGA-EE-A2MM-06 16 12146074 12146074 C T SNX29 Silent p.P373P 0.44 TCGA-EE-A2MM-06 16 1270611 1270611 C T CACNA1H Missense_Mutation p.P2227S 0.36 tolerated_low_confidence(0.13) possibly_damaging(0.685) TCGA-EE-A2MM-06 16 14711453 14711453 G A PARN Nonsense_Mutation p.R128* 0.43 TCGA-EE-A2MM-06 16 19034496 19034496 C T TMC7 Silent p.I230I 0.38 TCGA-EE-A2MM-06 16 20357650 20357650 G A UMOD Missense_Mutation p.S327F 0.52 deleterious(0.04) benign(0.024) TCGA-EE-A2MM-06 16 20554463 20554463 G A ACSM2B Missense_Mutation p.S468F 0.23 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MM-06 16 21117830 21117830 C T DNAH3 Missense_Mutation p.M755I 0.53 tolerated(0.47) benign(0.011) TCGA-EE-A2MM-06 16 24196829 24196829 G A PRKCB Missense_Mutation p.E555K 0.29 deleterious(0.02) possibly_damaging(0.682) TCGA-EE-A2MM-06 16 24196848 24196848 C A PRKCB Missense_Mutation p.P561H 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 16 3254666 3254666 C T OR1F1 Silent p.L140L 0.40 TCGA-EE-A2MM-06 16 4494664 4494664 G T DNAJA3 Splice_Site p.X311_splice 0.12 TCGA-EE-A2MM-06 16 49671485 49671485 G A ZNF423 Silent p.F526F 0.40 TCGA-EE-A2MM-06 16 52497973 52497973 G A TOX3 Missense_Mutation p.P94L 0.55 deleterious(0) benign(0.078) TCGA-EE-A2MM-06 16 56518620 56518620 G A BBS2 3'UTR 0.58 TCGA-EE-A2MM-06 16 568989 568989 C T RAB11FIP3 Missense_Mutation p.P563S 0.39 tolerated(0.06) benign(0.186) TCGA-EE-A2MM-06 16 67440207 67440207 G A ZDHHC1 Missense_Mutation p.P50S 0.36 tolerated(0.22) possibly_damaging(0.616) TCGA-EE-A2MM-06 16 67902281 67902281 C T NUTF2 Silent p.F46F 0.44 TCGA-EE-A2MM-06 16 67917687 67917687 G C EDC4 Intron 0.41 TCGA-EE-A2MM-06 16 68398948 68398948 G A SMPD3 Silent p.I457I 0.37 TCGA-EE-A2MM-06 16 830189 830189 C T MSLNL Missense_Mutation p.G271E 0.42 benign(0.001) TCGA-EE-A2MM-06 16 830190 830190 C T MSLNL Missense_Mutation p.G271R 0.42 benign(0.061) TCGA-EE-A2MM-06 16 88052139 88052139 G - BANP Frame_Shift_Del p.R246Pfs*104 0.32 TCGA-EE-A2MM-06 16 9857935 9857935 C T GRIN2A Missense_Mutation p.E1156K 0.36 deleterious(0.03) benign(0.026) TCGA-EE-A2MM-06 16 9858671 9858671 C T GRIN2A Missense_Mutation p.M910I 0.47 tolerated(0.25) benign(0.001) TCGA-EE-A2MM-06 17 10304925 10304925 C T MYH8 Missense_Mutation p.D956N 0.42 deleterious(0) possibly_damaging(0.786) TCGA-EE-A2MM-06 17 10395837 10395837 C T MYH1 Missense_Mutation p.E1906K 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MM-06 17 10542614 10542614 C T MYH3 Splice_Site p.X1034_splice 0.45 TCGA-EE-A2MM-06 17 26696364 26696364 G A VTN Silent p.P205P 0.40 TCGA-EE-A2MM-06 17 26696365 26696365 G T VTN Missense_Mutation p.P205H 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 17 26960076 26960076 C A KIAA0100 Missense_Mutation p.R1230L 0.19 tolerated(0.35) benign(0.185) TCGA-EE-A2MM-06 17 27903413 27903413 G A GIT1 Missense_Mutation p.P488L 0.41 tolerated(0.5) benign(0.018) TCGA-EE-A2MM-06 17 27903414 27903414 G A GIT1 Missense_Mutation p.P488S 0.41 tolerated(0.79) benign(0.018) TCGA-EE-A2MM-06 17 29226322 29226322 G A TEFM Silent p.F316F 0.52 TCGA-EE-A2MM-06 17 32483565 32483565 A C ASIC2 5'UTR 0.54 TCGA-EE-A2MM-06 17 33849309 33849309 C T SLFN12L Silent p.R30R 0.35 TCGA-EE-A2MM-06 17 3527480 3527480 C T SHPK Missense_Mutation p.R119Q 0.74 tolerated(0.46) benign(0.066) TCGA-EE-A2MM-06 17 37922133 37922133 G A IKZF3 Silent p.F480F 0.45 TCGA-EE-A2MM-06 17 38127789 38127789 C T GSDMA Missense_Mutation p.H191Y 0.29 tolerated(0.15) possibly_damaging(0.701) TCGA-EE-A2MM-06 17 38978704 38978704 C T KRT10 Missense_Mutation p.G45E 0.39 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A2MM-06 17 39642654 39642654 C T KRT36 Missense_Mutation p.E460K 0.46 tolerated(0.07) benign(0.018) TCGA-EE-A2MM-06 17 40932784 40932784 G A WNK4 Missense_Mutation p.R23Q 0.55 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A2MM-06 17 41246344 41246344 C T BRCA1 Missense_Mutation p.E402K 0.44 tolerated(0.87) benign(0.001) TCGA-EE-A2MM-06 17 4348461 4348461 C T SPNS3 Missense_Mutation p.R134W 0.18 deleterious(0.02) possibly_damaging(0.849) TCGA-EE-A2MM-06 17 4575297 4575297 G A PELP1 Missense_Mutation p.P997S 1.00 unknown(0) TCGA-EE-A2MM-06 17 46136446 46136446 G T NFE2L1 Missense_Mutation p.D588Y 0.46 deleterious(0.01) benign(0.137) TCGA-EE-A2MM-06 17 5462329 5462329 G A NLRP1 Missense_Mutation p.P563S 0.81 tolerated(0.59) benign(0.041) TCGA-EE-A2MM-06 17 5463016 5463016 C T NLRP1 Missense_Mutation p.G334R 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 17 59067552 59067552 C T BCAS3 Missense_Mutation p.P481L 0.67 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MM-06 17 648573 648573 G A GEMIN4 Missense_Mutation p.P904S 0.92 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MM-06 17 67083503 67083503 G A ABCA6 Silent p.I1270I 0.29 TCGA-EE-A2MM-06 17 71364685 71364685 C T SDK2 Silent p.K1676K 0.59 TCGA-EE-A2MM-06 17 7330297 7330297 C T C17orf74 Silent p.S329S 0.64 TCGA-EE-A2MM-06 17 7330298 7330298 C T C17orf74 Missense_Mutation p.R330W 0.70 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2MM-06 17 73552144 73552144 C T LLGL2 Silent p.F31F 0.57 TCGA-EE-A2MM-06 17 73745123 73745123 C T ITGB4 Missense_Mutation p.P1105S 0.40 tolerated(0.17) benign(0.017) TCGA-EE-A2MM-06 17 73831793 73831793 C T UNC13D Silent p.E554E 0.60 TCGA-EE-A2MM-06 17 74015720 74015720 G C EVPL Silent p.A342A 0.38 TCGA-EE-A2MM-06 17 74395073 74395073 C T UBE2O Splice_Site p.X543_splice 0.40 TCGA-EE-A2MM-06 17 75085497 75085497 C T SEC14L1 Intron 0.50 TCGA-EE-A2MM-06 17 7578502 7578502 A C TP53 Missense_Mutation p.V143G 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 17 9774075 9774075 C T GLP2R Silent p.F356F 0.34 TCGA-EE-A2MM-06 18 28576969 28576969 G A DSC3 Nonsense_Mutation p.Q761* 0.29 TCGA-EE-A2MM-06 18 28723636 28723636 G A DSC1 Missense_Mutation p.S353F 0.42 tolerated(0.13) benign(0.001) TCGA-EE-A2MM-06 18 28992934 28992934 G A DSG4 Missense_Mutation p.M852I 0.45 deleterious(0.04) benign(0.008) TCGA-EE-A2MM-06 18 45395657 45395657 T C SMAD2 Silent p.E159E 0.41 TCGA-EE-A2MM-06 18 45395668 45395668 T C SMAD2 Missense_Mutation p.K156E 0.42 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2MM-06 18 61160431 61160431 G A SERPINB5 Intron 0.36 TCGA-EE-A2MM-06 18 61390600 61390600 G A SERPINB11 Silent p.T382T 0.42 TCGA-EE-A2MM-06 18 77477868 77477868 C T CTDP1 Missense_Mutation p.H757Y 0.52 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MM-06 19 10071003 10071003 G A COL5A3 3'UTR 0.85 TCGA-EE-A2MM-06 19 10157465 10157465 T C C3P1 RNA 0.68 TCGA-EE-A2MM-06 19 10433948 10433948 G A RAVER1 Silent p.A334A 0.25 TCGA-EE-A2MM-06 19 1508476 1508476 C - ADAMTSL5 Frame_Shift_Del p.G152Vfs*58 0.12 TCGA-EE-A2MM-06 19 17007101 17007101 C T CPAMD8 Missense_Mutation p.G1818E 0.25 tolerated_low_confidence(0.38) benign(0.003) TCGA-EE-A2MM-06 19 18729195 18729195 C T TMEM59L Silent p.L265L 0.53 TCGA-EE-A2MM-06 19 18971135 18971135 C T UPF1 Missense_Mutation p.R730C 0.65 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 19 22941345 22941345 C T ZNF99 Missense_Mutation p.E456K 0.32 tolerated(0.52) benign(0.169) TCGA-EE-A2MM-06 19 24010532 24010532 C T RPSAP58 Missense_Mutation p.S190F 0.62 deleterious(0.01) benign(0.056) TCGA-EE-A2MM-06 19 24310604 24310604 C T ZNF254 Missense_Mutation p.P601L 0.45 tolerated(0.12) benign(0.233) TCGA-EE-A2MM-06 19 2477115 2477115 C T GADD45B Nonsense_Mutation p.Q79* 0.22 TCGA-EE-A2MM-06 19 30165196 30165196 C T PLEKHF1 Silent p.I150I 0.29 TCGA-EE-A2MM-06 19 3180046 3180046 G A S1PR4 3'UTR 0.32 TCGA-EE-A2MM-06 19 34838881 34838881 G A KIAA0355 Missense_Mutation p.R874Q 0.50 tolerated_low_confidence(0.09) probably_damaging(0.947) TCGA-EE-A2MM-06 19 35633349 35633349 G A FXYD1 Intron 0.41 TCGA-EE-A2MM-06 19 36051324 36051324 G A ATP4A Missense_Mutation p.T243M 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 19 39961136 39961136 C T SUPT5H Silent p.I550I 0.48 TCGA-EE-A2MM-06 19 39971436 39971436 C T TIMM50 Silent p.S84S 0.38 TCGA-EE-A2MM-06 19 40739463 40739463 C T AKT2 3'UTR 0.29 TCGA-EE-A2MM-06 19 4288330 4288330 C T SHD Silent p.T269T 0.33 TCGA-EE-A2MM-06 19 4359234 4359234 C T MPND Silent p.T437T 0.29 TCGA-EE-A2MM-06 19 43674281 43674281 C T PSG5 Missense_Mutation p.G325E 0.38 tolerated(0.64) benign(0.005) TCGA-EE-A2MM-06 19 43699390 43699390 A C PSG4 Missense_Mutation p.L249V 0.45 tolerated(0.5) possibly_damaging(0.694) TCGA-EE-A2MM-06 19 47535945 47535945 C T NPAS1 Silent p.F159F 0.48 TCGA-EE-A2MM-06 19 48922977 48922977 C T GRIN2D Missense_Mutation p.A666V 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 19 48967909 48967909 C T KCNJ14 Silent p.L396L 0.56 TCGA-EE-A2MM-06 19 49496384 49496384 G A GYS1 5'UTR 0.33 TCGA-EE-A2MM-06 19 51021343 51021343 G A LRRC4B Missense_Mutation p.P543S 0.38 deleterious(0.02) benign(0.067) TCGA-EE-A2MM-06 19 52004713 52004713 C T SIGLEC12 Missense_Mutation p.R92Q 0.45 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MM-06 19 52222609 52222609 C T HAS1 Silent p.R184R 0.54 TCGA-EE-A2MM-06 19 52825107 52825107 C T ZNF480 Missense_Mutation p.P202S 0.37 tolerated(0.13) probably_damaging(0.983) TCGA-EE-A2MM-06 19 53678737 53678737 C T ZNF665 Missense_Mutation p.D35N 0.50 deleterious(0.01) possibly_damaging(0.76) TCGA-EE-A2MM-06 19 53994434 53994434 A C ZNF813 Missense_Mutation p.R316S 0.39 tolerated(0.85) benign(0.245) TCGA-EE-A2MM-06 19 54299280 54299280 C T NLRP12 Silent p.L977L 0.45 TCGA-EE-A2MM-06 19 55106754 55106754 C T LILRA1 Missense_Mutation p.S183F 0.47 deleterious(0.02) benign(0.138) TCGA-EE-A2MM-06 19 56319229 56319229 G A NLRP11 Missense_Mutation p.R665C 0.32 deleterious(0) possibly_damaging(0.858) TCGA-EE-A2MM-06 19 56410231 56410231 C T NLRP13 Silent p.V954V 0.42 TCGA-EE-A2MM-06 19 56487665 56487665 C T NLRP8 Silent p.L958L 0.49 TCGA-EE-A2MM-06 19 56539737 56539737 C T NLRP5 Missense_Mutation p.P713L 0.39 tolerated(0.34) benign(0.016) TCGA-EE-A2MM-06 19 57932560 57932560 C T ZNF17 Missense_Mutation p.S567F 0.36 deleterious(0.01) possibly_damaging(0.637) TCGA-EE-A2MM-06 19 58565251 58565251 G A ZSCAN1 Silent p.R353R 0.50 TCGA-EE-A2MM-06 19 6763740 6763740 C T SH2D3A Missense_Mutation p.G7E 0.22 tolerated(0.3) benign(0.02) TCGA-EE-A2MM-06 19 7755382 7755382 G A FCER2 Silent p.F177F 0.24 TCGA-EE-A2MM-06 19 8121277 8121277 G A CCL25 Silent p.K73K 0.46 TCGA-EE-A2MM-06 19 8146359 8146359 C T FBN3 Missense_Mutation p.D2407N 0.68 tolerated(0.36) probably_damaging(1) TCGA-EE-A2MM-06 19 9061038 9061038 G A MUC16 Missense_Mutation p.T8803I 0.29 unknown(0) TCGA-EE-A2MM-06 19 9088636 9088636 C T MUC16 Missense_Mutation p.G1060E 0.30 unknown(0) TCGA-EE-A2MM-06 19 9226038 9226038 G A OR7G1 Silent p.V134V 0.29 TCGA-EE-A2MM-06 1 10335516 10335516 C T KIF1B Missense_Mutation p.P299S 0.33 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MM-06 1 10431265 10431265 C A KIF1B Missense_Mutation p.P1585T 0.44 tolerated(0.05) probably_damaging(0.996) TCGA-EE-A2MM-06 1 10690114 10690114 C T PEX14 3'UTR 0.24 TCGA-EE-A2MM-06 1 107867472 107867472 G A NTNG1 Missense_Mutation p.G272E 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 1 107867473 107867473 G A NTNG1 Silent p.G272G 0.41 TCGA-EE-A2MM-06 1 108293799 108293799 C T VAV3 Missense_Mutation p.R400Q 0.56 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MM-06 1 109944542 109944542 G A PSMA5 3'UTR 0.58 TCGA-EE-A2MM-06 1 1103313 1103313 G A MIR200A RNA 0.55 TCGA-EE-A2MM-06 1 113240676 113240676 C T MOV10 Silent p.A753A 0.40 TCGA-EE-A2MM-06 1 114372628 114372628 G A PTPN22 Missense_Mutation p.P693S 0.52 tolerated(1) benign(0.076) TCGA-EE-A2MM-06 1 115113361 115113361 G A BCAS2 Missense_Mutation p.H144Y 0.38 deleterious(0.04) possibly_damaging(0.654) TCGA-EE-A2MM-06 1 115256528 115256528 T A NRAS Missense_Mutation p.Q61H 0.54 deleterious(0) possibly_damaging(0.531) TCGA-EE-A2MM-06 1 115604780 115604780 C T TSPAN2 Silent p.R82R 0.46 TCGA-EE-A2MM-06 1 1247737 1247737 C T CPSF3L Silent p.L498L 0.75 TCGA-EE-A2MM-06 1 12785762 12785762 C T AADACL3 Silent p.I284I 0.40 TCGA-EE-A2MM-06 1 12806372 12806372 C T C1orf158 5'UTR 0.50 TCGA-EE-A2MM-06 1 12853359 12853359 C T PRAMEF1 5'UTR 0.39 TCGA-EE-A2MM-06 1 12908038 12908038 C T HNRNPCL1 Silent p.A35A 0.20 TCGA-EE-A2MM-06 1 147380919 147380919 C T GJA8 Silent p.F279F 0.38 TCGA-EE-A2MM-06 1 149939341 149939341 G A OTUD7B Missense_Mutation p.P127L 0.31 tolerated(0.7) benign(0.005) TCGA-EE-A2MM-06 1 149939342 149939342 G A OTUD7B Missense_Mutation p.P127S 0.31 tolerated(0.4) possibly_damaging(0.608) TCGA-EE-A2MM-06 1 151380947 151380947 A T POGZ Silent p.P724P 0.28 TCGA-EE-A2MM-06 1 151381186 151381186 A C POGZ Missense_Mutation p.L682W 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 1 152275656 152275656 G A FLG Silent p.P3902P 0.55 TCGA-EE-A2MM-06 1 152277508 152277508 C T FLG Missense_Mutation p.G3285E 0.41 unknown(0) TCGA-EE-A2MM-06 1 154794621 154794621 G A KCNN3 Silent p.L325L 0.52 TCGA-EE-A2MM-06 1 155217900 155217900 G A FAM189B Missense_Mutation p.L592F 0.51 deleterious(0.04) benign(0.004) TCGA-EE-A2MM-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.96 deleterious(0.05) benign(0.049) TCGA-EE-A2MM-06 1 15860772 15860772 T C DNAJC16 Missense_Mutation p.F70L 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 1 158670295 158670295 G A OR6K2 Nonsense_Mutation p.Q50* 0.39 TCGA-EE-A2MM-06 1 160122976 160122976 G A ATP1A4 Missense_Mutation p.E57K 0.53 tolerated(0.13) benign(0.004) TCGA-EE-A2MM-06 1 160917755 160917755 A G ITLN2 Silent p.C263C 0.31 TCGA-EE-A2MM-06 1 161514504 161514504 G A FCGR3A Silent p.I224I 0.48 TCGA-EE-A2MM-06 1 161595948 161595948 G A FCGR3B Silent p.I224I 0.10 TCGA-EE-A2MM-06 1 16262492 16262492 C A SPEN Missense_Mutation p.P3253T 0.54 probably_damaging(0.987) TCGA-EE-A2MM-06 1 166888544 166888544 C T ILDR2 3'UTR 0.62 TCGA-EE-A2MM-06 1 167095746 167095746 C T DUSP27 Missense_Mutation p.P460S 0.38 tolerated(0.43) benign(0.001) TCGA-EE-A2MM-06 1 167097079 167097079 C T DUSP27 Missense_Mutation p.S904F 0.55 tolerated(0.49) benign(0.01) TCGA-EE-A2MM-06 1 167798661 167798661 C T ADCY10 Silent p.G1198G 0.29 TCGA-EE-A2MM-06 1 169512080 169512080 C A F5 Nonsense_Mutation p.E750* 0.39 TCGA-EE-A2MM-06 1 170928613 170928613 C T MROH9 Missense_Mutation p.P55S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 1 171247897 171247897 C T FMO1 Missense_Mutation p.H172Y 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MM-06 1 172633494 172633494 G A FASLG Missense_Mutation p.E139K 0.49 tolerated(0.13) benign(0.012) TCGA-EE-A2MM-06 1 173596225 173596225 C T ANKRD45 Silent p.G190G 0.42 TCGA-EE-A2MM-06 1 176563858 176563858 G A PAPPA2 Missense_Mutation p.G373E 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 1 182026956 182026956 C T ZNF648 Missense_Mutation p.E64K 0.31 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A2MM-06 1 196714956 196714956 G A CFH Missense_Mutation p.G1107E 0.40 tolerated(0.06) possibly_damaging(0.527) TCGA-EE-A2MM-06 1 197032004 197032004 G A F13B Missense_Mutation p.P83L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 1 200143285 200143285 G A NR5A2 Missense_Mutation p.D525N 0.21 tolerated(0.08) benign(0.038) TCGA-EE-A2MM-06 1 200944676 200944676 C T KIF21B Missense_Mutation p.R1522Q 0.49 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MM-06 1 200977899 200977899 C T KIF21B Missense_Mutation p.E149K 0.25 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MM-06 1 201016734 201016734 C T CACNA1S Missense_Mutation p.E1488K 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MM-06 1 201038277 201038277 C T CACNA1S Silent p.E846E 0.30 TCGA-EE-A2MM-06 1 201355974 201355974 C T LAD1 Missense_Mutation p.G172E 0.44 tolerated(0.58) benign(0.045) TCGA-EE-A2MM-06 1 20234251 20234251 C T OTUD3 3'UTR 0.29 TCGA-EE-A2MM-06 1 205498751 205498751 C T CDK18 Intron 0.47 TCGA-EE-A2MM-06 1 205813963 205813963 G A PM20D1 Silent p.F184F 0.54 TCGA-EE-A2MM-06 1 206681311 206681311 G A RASSF5 Missense_Mutation p.A126T 0.50 tolerated(0.34) benign(0.025) TCGA-EE-A2MM-06 1 207697197 207697197 G A CR1 Silent p.V243V 0.40 TCGA-EE-A2MM-06 1 20979121 20979121 G A DDOST Missense_Mutation p.S405F 0.35 deleterious(0.02) benign(0.152) TCGA-EE-A2MM-06 1 210970979 210970979 C T KCNH1 Missense_Mutation p.E596K 0.46 tolerated(0.43) benign(0.007) TCGA-EE-A2MM-06 1 212798417 212798417 C T FAM71A Silent p.V66V 0.40 TCGA-EE-A2MM-06 1 21546393 21546393 G A ECE1 3'UTR 0.58 TCGA-EE-A2MM-06 1 216040469 216040469 C T USH2A Missense_Mutation p.G2909S 0.47 probably_damaging(0.971) TCGA-EE-A2MM-06 1 217671732 217671732 C A GPATCH2 Missense_Mutation p.W391L 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 1 220978453 220978453 C T MARC1 Silent p.S271S 0.56 TCGA-EE-A2MM-06 1 22214013 22214013 C T HSPG2 Silent p.G286G 0.39 TCGA-EE-A2MM-06 1 228033873 228033873 C T PRSS38 Silent p.V315V 0.39 TCGA-EE-A2MM-06 1 228509213 228509213 G A OBSCN Missense_Mutation p.E5848K 0.50 probably_damaging(0.997) TCGA-EE-A2MM-06 1 228520606 228520606 C T OBSCN Missense_Mutation p.S6190L 0.29 probably_damaging(0.998) TCGA-EE-A2MM-06 1 231335978 231335978 G A TRIM67 Missense_Mutation p.E450K 0.46 deleterious(0) possibly_damaging(0.76) TCGA-EE-A2MM-06 1 233134019 233134019 G A PCNXL2 Silent p.S1923S 0.48 TCGA-EE-A2MM-06 1 234367487 234367487 G A SLC35F3 Missense_Mutation p.R203K 0.46 tolerated(0.12) benign(0.311) TCGA-EE-A2MM-06 1 236205349 236205349 G A NID1 Silent p.L332L 0.49 TCGA-EE-A2MM-06 1 236881217 236881217 C T ACTN2 Silent p.I62I 0.43 TCGA-EE-A2MM-06 1 23767937 23767937 C T ASAP3 Silent p.Q259Q 0.31 TCGA-EE-A2MM-06 1 240371372 240371372 C T FMN2 Missense_Mutation p.P1087L 0.86 unknown(0) TCGA-EE-A2MM-06 1 24413209 24413209 C T MYOM3 Missense_Mutation p.V575M 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 1 248039313 248039313 G A TRIM58 Missense_Mutation p.R328Q 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 1 248084496 248084496 C T OR2T8 Silent p.F59F 0.28 TCGA-EE-A2MM-06 1 248112449 248112449 G A OR2L8 Missense_Mutation p.G97E 0.08 tolerated(0.1) benign(0.2) TCGA-EE-A2MM-06 1 248112615 248112615 G A OR2L8 Silent p.S152S 0.26 TCGA-EE-A2MM-06 1 248224273 248224273 G A OR2L3 Missense_Mutation p.G97E 0.42 tolerated(0.1) benign(0.076) TCGA-EE-A2MM-06 1 248263493 248263493 C T OR2L13 Silent p.I272I 0.47 TCGA-EE-A2MM-06 1 26517206 26517206 G A CATSPER4 Missense_Mutation p.G30R 0.69 tolerated_low_confidence(0.44) benign(0.001) TCGA-EE-A2MM-06 1 26646810 26646810 C T CD52 3'UTR 0.30 TCGA-EE-A2MM-06 1 27106022 27106023 - T ARID1A Frame_Shift_Ins p.R1879Sfs*22 0.32 TCGA-EE-A2MM-06 1 27992928 27992928 G A IFI6 Silent p.T127T 0.51 TCGA-EE-A2MM-06 1 28661008 28661008 C T MED18 Missense_Mutation p.L52F 0.53 tolerated(0.59) benign(0.213) TCGA-EE-A2MM-06 1 2938965 2938965 C T ACTRT2 Silent p.L239L 0.29 TCGA-EE-A2MM-06 1 34663234 34663234 C T C1orf94 Silent p.F243F 0.29 TCGA-EE-A2MM-06 1 3644215 3644215 C T TP73 Missense_Mutation p.S289F 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MM-06 1 41107598 41107598 G A RIMS3 5'UTR 0.40 TCGA-EE-A2MM-06 1 43748580 43748580 C T C1orf210 Missense_Mutation p.G73E 0.31 tolerated(0.11) benign(0.086) TCGA-EE-A2MM-06 1 47364570 47364570 C T CYP4Z2P RNA 0.30 TCGA-EE-A2MM-06 1 50885198 50885198 G A DMRTA2 Silent p.S256S 0.46 TCGA-EE-A2MM-06 1 50885199 50885199 G A DMRTA2 Missense_Mutation p.S256F 0.46 tolerated(0.05) benign(0.045) TCGA-EE-A2MM-06 1 53555620 53555620 G A SLC1A7 Intron 0.43 TCGA-EE-A2MM-06 1 55069586 55069586 C T ACOT11 Silent p.S376S 0.29 TCGA-EE-A2MM-06 1 55119671 55119671 G A MROH7 Missense_Mutation p.D358N 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.853) TCGA-EE-A2MM-06 1 55472707 55472707 G A BSND Missense_Mutation p.E104K 0.67 tolerated(0.13) possibly_damaging(0.779) TCGA-EE-A2MM-06 1 62677136 62677136 G A L1TD1 3'UTR 0.36 TCGA-EE-A2MM-06 1 65247190 65247190 C T RAVER2 Missense_Mutation p.S305F 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MM-06 1 79470895 79470895 G A ELTD1 Missense_Mutation p.S11F 0.46 deleterious_low_confidence(0) benign(0.043) TCGA-EE-A2MM-06 1 86557978 86557978 G A COL24A1 Missense_Mutation p.S542F 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 1 9324505 9324505 C T H6PD Silent p.I651I 0.55 TCGA-EE-A2MM-06 1 94668153 94668153 G A ARHGAP29 Missense_Mutation p.L364F 0.51 tolerated(0.57) benign(0.426) TCGA-EE-A2MM-06 1 98039524 98039524 C T DPYD Missense_Mutation p.M377I 0.50 deleterious(0.02) benign(0.03) TCGA-EE-A2MM-06 20 16729012 16729012 C T OTOR 5'UTR 0.36 TCGA-EE-A2MM-06 20 19261689 19261689 G A SLC24A3 Missense_Mutation p.E77K 0.48 tolerated(0.46) benign(0.029) TCGA-EE-A2MM-06 20 20257922 20257922 C T C20orf26 Silent p.S872S 0.39 TCGA-EE-A2MM-06 20 20585995 20585995 T A RALGAPA2 Missense_Mutation p.D621V 0.44 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MM-06 20 23016733 23016733 C T SSTR4 Missense_Mutation p.P205S 0.37 deleterious(0.03) benign(0.144) TCGA-EE-A2MM-06 20 30371683 30371683 C T TPX2 Missense_Mutation p.H458Y 0.40 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MM-06 20 31374422 31374422 C T DNMT3B Missense_Mutation p.P141S 0.54 tolerated_low_confidence(0.19) benign(0.001) TCGA-EE-A2MM-06 20 31878884 31878884 G A BPIFB1 Missense_Mutation p.G163R 0.45 tolerated(0.28) benign(0.029) TCGA-EE-A2MM-06 20 33722742 33722742 G A EDEM2 Silent p.T167T 0.57 TCGA-EE-A2MM-06 20 34144810 34144810 C T ERGIC3 Nonsense_Mutation p.Q321* 0.43 TCGA-EE-A2MM-06 20 35293686 35293686 G A NDRG3 Silent p.I237I 0.47 TCGA-EE-A2MM-06 20 35742546 35742546 C T MROH8 Silent p.V873V 0.57 TCGA-EE-A2MM-06 20 36841832 36841832 C T KIAA1755 Missense_Mutation p.G1072E 0.54 tolerated(0.22) benign(0.037) TCGA-EE-A2MM-06 20 36964043 36964043 C T BPI Silent p.V464V 0.52 TCGA-EE-A2MM-06 20 40944413 40944413 G A PTPRT Missense_Mutation p.P697S 0.58 deleterious(0) possibly_damaging(0.868) TCGA-EE-A2MM-06 20 4202121 4202121 C T ADRA1D 3'UTR 0.45 TCGA-EE-A2MM-06 20 43752535 43752535 C T WFDC12 Nonsense_Mutation p.W96* 0.56 TCGA-EE-A2MM-06 20 47869271 47869271 G A ZNFX1 Missense_Mutation p.R1068C 0.41 tolerated(0.18) benign(0.222) TCGA-EE-A2MM-06 20 51872404 51872404 C T TSHZ2 Missense_Mutation p.P803S 0.40 tolerated(0.2) probably_damaging(0.998) TCGA-EE-A2MM-06 20 52774095 52774095 C T CYP24A1 Silent p.L422L 0.48 TCGA-EE-A2MM-06 20 57768585 57768585 G A ZNF831 Silent p.E837E 0.35 TCGA-EE-A2MM-06 20 58559806 58559806 C T CDH26 Silent p.F218F 0.38 TCGA-EE-A2MM-06 20 61834922 61834922 G A YTHDF1 Missense_Mutation p.P124S 0.49 deleterious(0.02) possibly_damaging(0.616) TCGA-EE-A2MM-06 20 8713998 8713998 G A PLCB1 Missense_Mutation p.G668S 0.39 tolerated(0.69) benign(0) TCGA-EE-A2MM-06 20 9519997 9519997 C T PAK7 3'UTR 0.57 TCGA-EE-A2MM-06 21 10996061 10996061 G A TPTE RNA 0.22 TCGA-EE-A2MM-06 21 37833796 37833796 G A CLDN14 Silent p.I66I 0.37 TCGA-EE-A2MM-06 21 39671204 39671204 C T KCNJ15 Silent p.G7G 0.38 TCGA-EE-A2MM-06 21 39672429 39672429 G A KCNJ15 3'UTR 0.68 TCGA-EE-A2MM-06 21 41143006 41143006 C T IGSF5 Silent p.S194S 0.44 TCGA-EE-A2MM-06 21 41450784 41450784 C T DSCAM Missense_Mutation p.R1514K 0.47 tolerated(0.06) possibly_damaging(0.734) TCGA-EE-A2MM-06 21 45504055 45504055 C T TRAPPC10 Missense_Mutation p.S764F 0.34 tolerated(0.11) benign(0.139) TCGA-EE-A2MM-06 21 45877014 45877014 G A LRRC3 Missense_Mutation p.D163N 0.34 tolerated(0.14) benign(0.298) TCGA-EE-A2MM-06 22 16449672 16449672 G C OR11H1 Missense_Mutation p.L45V 0.25 tolerated(0.15) benign(0.126) TCGA-EE-A2MM-06 22 20819167 20819167 G A KLHL22 Nonsense_Mutation p.R364* 0.87 TCGA-EE-A2MM-06 22 21138412 21138412 G A SERPIND1 Missense_Mutation p.E348K 0.72 tolerated(0.05) benign(0.293) TCGA-EE-A2MM-06 22 23465354 23465354 C T GNAZ Silent p.F268F 0.89 TCGA-EE-A2MM-06 22 23465355 23465355 C T GNAZ Silent p.L269L 0.89 TCGA-EE-A2MM-06 22 23653935 23653935 C T BCR Silent p.I1078I 0.77 TCGA-EE-A2MM-06 22 29534801 29534801 C T KREMEN1 Missense_Mutation p.A385V 0.82 tolerated_low_confidence(0.42) benign(0.001) TCGA-EE-A2MM-06 22 31927102 31927102 C T SFI1 Missense_Mutation p.P109S 0.83 deleterious(0) possibly_damaging(0.798) TCGA-EE-A2MM-06 22 32810145 32810145 C T BPIFC 3'UTR 1.00 TCGA-EE-A2MM-06 22 38627296 38627296 C T TMEM184B Missense_Mutation p.G135R 0.81 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MM-06 22 43972299 43972299 C T EFCAB6 Missense_Mutation p.D1100N 0.75 tolerated(0.08) possibly_damaging(0.703) TCGA-EE-A2MM-06 2 106690485 106690485 G A C2orf40 Missense_Mutation p.G91S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 2 107032315 107032315 C T RGPD3 Silent p.E1685E 0.39 TCGA-EE-A2MM-06 2 109124082 109124082 G T GCC2 Missense_Mutation p.R1684L 0.50 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MM-06 2 112940464 112940464 C T FBLN7 Missense_Mutation p.P256L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 2 112940465 112940465 C A FBLN7 Silent p.P256P 0.37 TCGA-EE-A2MM-06 2 113504016 113504016 G A CKAP2L Missense_Mutation p.A580V 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 2 113942979 113942979 C T PSD4 Missense_Mutation p.P404L 0.46 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-EE-A2MM-06 2 113993093 113993093 G A PAX8 Missense_Mutation p.S322F 0.39 deleterious(0.01) possibly_damaging(0.605) TCGA-EE-A2MM-06 2 114398488 114398488 G A RABL2A Silent p.R105R 0.47 TCGA-EE-A2MM-06 2 114398994 114398994 C T RABL2A Silent p.F157F 0.36 TCGA-EE-A2MM-06 2 122106150 122106150 C T CLASP1 Missense_Mutation p.E1451K 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 2 125192188 125192188 C T CNTNAP5 Silent p.F219F 0.52 TCGA-EE-A2MM-06 2 128338359 128338359 G A MYO7B Missense_Mutation p.E348K 0.48 tolerated(0.46) benign(0.403) TCGA-EE-A2MM-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 2 135596225 135596225 C T ACMSD 5'UTR 0.46 TCGA-EE-A2MM-06 2 136741005 136741005 T A DARS Missense_Mutation p.Y29F 0.34 tolerated(0.1) benign(0.443) TCGA-EE-A2MM-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.36 tolerated(0.66) probably_damaging(0.964) TCGA-EE-A2MM-06 2 158406749 158406749 G A ACVR1C Missense_Mutation p.R234C 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 2 160741674 160741674 C T LY75-CD302 Silent p.V348V 0.31 TCGA-EE-A2MM-06 2 160884796 160884796 C T PLA2R1 Silent p.R344R 0.39 TCGA-EE-A2MM-06 2 162274311 162274311 C T TBR1 Missense_Mutation p.P273S 0.44 tolerated(0.11) probably_damaging(0.969) TCGA-EE-A2MM-06 2 165383593 165383593 C T GRB14 Silent p.G178G 0.36 TCGA-EE-A2MM-06 2 166848879 166848879 G A SCN1A Nonsense_Mutation p.R1636* 0.09 TCGA-EE-A2MM-06 2 166894589 166894589 C T SCN1A Silent p.K881K 0.49 TCGA-EE-A2MM-06 2 167160752 167160752 G A SCN9A Silent p.I228I 0.51 TCGA-EE-A2MM-06 2 1691425 1691425 C T PXDN Missense_Mutation p.G132E 0.32 tolerated(0.05) probably_damaging(0.99) TCGA-EE-A2MM-06 2 169989134 169989134 C T LRP2 Missense_Mutation p.E4560K 0.15 benign(0.147) TCGA-EE-A2MM-06 2 173349974 173349974 C T ITGA6 Silent p.P612P 0.30 TCGA-EE-A2MM-06 2 174047580 174047580 A G MLTK Splice_Site p.X83_splice 0.17 TCGA-EE-A2MM-06 2 179433620 179433620 C T TTN Missense_Mutation p.E25747K 0.32 TCGA-EE-A2MM-06 2 179433669 179433669 G A TTN Silent p.I25730I 0.29 TCGA-EE-A2MM-06 2 179485498 179485498 G A TTN Missense_Mutation p.S15280F 0.58 TCGA-EE-A2MM-06 2 179490104 179490104 C T TTN Missense_Mutation p.G14815E 0.35 TCGA-EE-A2MM-06 2 179584443 179584443 C T TTN Missense_Mutation p.G7926R 0.44 TCGA-EE-A2MM-06 2 179616677 179616677 C T TTN Intron 0.38 TCGA-EE-A2MM-06 2 179629403 179629403 G A TTN Missense_Mutation p.S3280F 0.38 TCGA-EE-A2MM-06 2 182403827 182403827 G A CERKL Silent p.V536V 0.29 TCGA-EE-A2MM-06 2 182468748 182468748 G A CERKL Silent p.F99F 0.57 TCGA-EE-A2MM-06 2 189926325 189926325 C A COL5A2 Missense_Mutation p.R665I 0.48 probably_damaging(0.997) TCGA-EE-A2MM-06 2 1926472 1926472 T G MYT1L Missense_Mutation p.I357L 0.26 tolerated_low_confidence(0.46) benign(0.002) TCGA-EE-A2MM-06 2 196681570 196681570 C T DNAH7 Silent p.E3181E 0.44 TCGA-EE-A2MM-06 2 200213592 200213592 G A SATB2 Silent p.I335I 0.35 TCGA-EE-A2MM-06 2 201796123 201796123 C T ORC2 Missense_Mutation p.E286K 0.38 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MM-06 2 20205629 20205629 C T MATN3 Silent p.V222V 0.54 TCGA-EE-A2MM-06 2 203591024 203591024 C T FAM117B Missense_Mutation p.H300Y 0.42 tolerated(0.18) possibly_damaging(0.713) TCGA-EE-A2MM-06 2 20402505 20402505 G A SDC1 3'UTR 0.40 TCGA-EE-A2MM-06 2 21234304 21234304 C T APOB Silent p.G1812G 0.46 TCGA-EE-A2MM-06 2 219553520 219553520 C T STK36 Missense_Mutation p.S494F 0.31 tolerated(0.07) benign(0.299) TCGA-EE-A2MM-06 2 225422555 225422555 A G CUL3 Missense_Mutation p.Y29H 0.42 tolerated(0.06) benign(0.128) TCGA-EE-A2MM-06 2 228882624 228882624 C T SPHKAP Silent p.K982K 0.55 TCGA-EE-A2MM-06 2 230910783 230910783 G A SLC16A14 Silent p.F353F 0.42 TCGA-EE-A2MM-06 2 230911184 230911184 C T SLC16A14 Missense_Mutation p.D220N 0.45 tolerated(0.49) benign(0.001) TCGA-EE-A2MM-06 2 232603828 232603828 G A PDE6D Missense_Mutation p.P41S 0.50 tolerated(0.13) benign(0.188) TCGA-EE-A2MM-06 2 240969686 240969686 G A OR6B2 Missense_Mutation p.S54F 0.19 deleterious(0.02) benign(0.418) TCGA-EE-A2MM-06 2 240981437 240981437 G A PRR21 Silent p.F321F 0.43 TCGA-EE-A2MM-06 2 240985329 240985329 G A OR6B3 Missense_Mutation p.S54F 0.19 deleterious(0.02) possibly_damaging(0.541) TCGA-EE-A2MM-06 2 242755727 242755727 G A NEU4 Missense_Mutation p.E29K 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 2 25141758 25141758 G A ADCY3 Silent p.G33G 0.46 TCGA-EE-A2MM-06 2 26705348 26705348 G A OTOF Missense_Mutation p.S502L 0.44 deleterious(0.01) possibly_damaging(0.71) TCGA-EE-A2MM-06 2 27360450 27360450 G A C2orf53 Missense_Mutation p.P250S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 2 27851912 27851912 G A GPN1 Missense_Mutation p.G10E 0.47 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-EE-A2MM-06 2 28635174 28635174 C T FOSL2 Silent p.L280L 0.44 TCGA-EE-A2MM-06 2 29356568 29356568 G A CLIP4 Missense_Mutation p.G139R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 2 31591449 31591449 C T XDH Silent p.V686V 0.48 TCGA-EE-A2MM-06 2 3727481 3727481 G A ALLC Silent p.R65R 0.40 TCGA-EE-A2MM-06 2 43953530 43953530 C T PLEKHH2 Silent p.I887I 0.46 TCGA-EE-A2MM-06 2 69034454 69034454 C T ARHGAP25 Silent p.F172F 0.50 TCGA-EE-A2MM-06 2 7003698 7003698 A G CMPK2 Silent p.F229F 0.41 TCGA-EE-A2MM-06 2 71891488 71891488 C T DYSF Silent p.I1698I 0.48 TCGA-EE-A2MM-06 2 73226139 73226139 G A SFXN5 Missense_Mutation p.S158L 0.42 tolerated(0.35) benign(0.006) TCGA-EE-A2MM-06 2 80772163 80772163 G A CTNNA2 Silent p.R449R 0.50 TCGA-EE-A2MM-06 2 86406557 86406557 G A IMMT Missense_Mutation p.S103L 0.34 deleterious(0.01) benign(0.003) TCGA-EE-A2MM-06 2 89292000 89292000 G A IGKV1-8 Silent p.F91F 0.43 TCGA-EE-A2MM-06 2 98409003 98409003 G A TMEM131 Silent p.S1330S 0.54 TCGA-EE-A2MM-06 3 10276167 10276167 C T IRAK2 Missense_Mutation p.P433S 0.42 deleterious(0.04) possibly_damaging(0.791) TCGA-EE-A2MM-06 3 120352102 120352102 C T HGD Silent p.G360G 0.45 TCGA-EE-A2MM-06 3 121642073 121642073 C T SLC15A2 Missense_Mutation p.S321L 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 3 122419491 122419491 T A PARP14 Missense_Mutation p.I697K 0.38 deleterious(0) possibly_damaging(0.467) TCGA-EE-A2MM-06 3 127642655 127642655 C T KBTBD12 Nonsense_Mutation p.Q251* 0.41 TCGA-EE-A2MM-06 3 127786281 127786281 C T SEC61A1 Silent p.G331G 0.38 TCGA-EE-A2MM-06 3 127786282 127786282 C T SEC61A1 Missense_Mutation p.P332S 0.39 tolerated(0.62) benign(0.014) TCGA-EE-A2MM-06 3 131442448 131442448 G A CPNE4 Missense_Mutation p.R68C 0.49 deleterious(0.02) possibly_damaging(0.88) TCGA-EE-A2MM-06 3 13370432 13370432 G A NUP210 Silent p.S1375S 0.42 TCGA-EE-A2MM-06 3 134670461 134670461 G A EPHB1 Silent p.K124K 0.41 TCGA-EE-A2MM-06 3 138189764 138189764 C T ESYT3 Missense_Mutation p.P546S 0.39 tolerated(0.1) possibly_damaging(0.907) TCGA-EE-A2MM-06 3 140406642 140406642 G A TRIM42 Missense_Mutation p.R373Q 0.42 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MM-06 3 141497624 141497624 C T GRK7 Silent p.F166F 0.44 TCGA-EE-A2MM-06 3 148614490 148614490 C T CPA3 Missense_Mutation p.S417F 0.31 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-EE-A2MM-06 3 148904371 148904371 C T CP Silent p.R671R 0.47 TCGA-EE-A2MM-06 3 158787194 158787194 C T IQCJ 5'UTR 0.50 TCGA-EE-A2MM-06 3 169540241 169540241 G A LRRIQ4 Missense_Mutation p.E178K 0.45 tolerated(0.34) benign(0.019) TCGA-EE-A2MM-06 3 170184750 170184750 G A SLC7A14 3'UTR 0.47 TCGA-EE-A2MM-06 3 189692384 189692384 G A LEPREL1 Missense_Mutation p.S472L 0.53 deleterious(0.01) benign(0.288) TCGA-EE-A2MM-06 3 193210736 193210736 G A ATP13A4 Missense_Mutation p.S168L 0.41 tolerated(0.33) benign(0.032) TCGA-EE-A2MM-06 3 2942404 2942404 C T CNTN4 Missense_Mutation p.H326Y 0.40 tolerated(0.99) benign(0.063) TCGA-EE-A2MM-06 3 35835378 35835378 C T ARPP21 Silent p.V790V 0.47 TCGA-EE-A2MM-06 3 39230032 39230032 G A XIRP1 Missense_Mutation p.P302L 0.46 deleterious(0.03) probably_damaging(0.977) TCGA-EE-A2MM-06 3 39307074 39307074 C T CX3CR1 Silent p.G341G 0.45 TCGA-EE-A2MM-06 3 39373976 39373976 G A CCR8 Missense_Mutation p.G52R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 3 41439618 41439618 C T ULK4 Silent p.K1210K 0.33 TCGA-EE-A2MM-06 3 45000952 45000952 T C ZDHHC3 Intron 0.43 TCGA-EE-A2MM-06 3 46449597 46449597 G A CCRL2 Silent p.E21E 0.54 TCGA-EE-A2MM-06 3 48628250 48628250 C T COL7A1 Splice_Site p.X546_splice 0.30 TCGA-EE-A2MM-06 3 48631024 48631024 G A COL7A1 Silent p.L124L 0.47 TCGA-EE-A2MM-06 3 48669784 48669784 G A SLC26A6 Missense_Mutation p.S160F 0.57 deleterious(0.01) possibly_damaging(0.862) TCGA-EE-A2MM-06 3 48719126 48719126 C T NCKIPSD Missense_Mutation p.S229N 0.63 tolerated(0.28) benign(0) TCGA-EE-A2MM-06 3 49689785 49689785 G A BSN Silent p.K932K 0.56 TCGA-EE-A2MM-06 3 52525525 52525525 C T NISCH Silent p.T1300T 0.53 TCGA-EE-A2MM-06 3 52537850 52537850 C T STAB1 Silent p.F318F 0.49 TCGA-EE-A2MM-06 3 58107174 58107174 C T FLNB Missense_Mutation p.P1024S 0.49 deleterious(0.02) possibly_damaging(0.85) TCGA-EE-A2MM-06 3 7503366 7503366 G A GRM7 Missense_Mutation p.G491D 0.54 tolerated(0.54) benign(0.412) TCGA-EE-A2MM-06 3 97251213 97251213 G A EPHA6 Missense_Mutation p.E738K 0.47 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MM-06 4 100268181 100268181 C T ADH1C Missense_Mutation p.V81M 0.78 probably_damaging(0.973) TCGA-EE-A2MM-06 4 111441401 111441401 G A ENPEP Missense_Mutation p.D536N 0.92 tolerated(0.07) benign(0.12) TCGA-EE-A2MM-06 4 123264571 123264571 C T KIAA1109 Missense_Mutation p.S4120L 0.73 benign(0.047) TCGA-EE-A2MM-06 4 124323209 124323209 C T SPRY1 Missense_Mutation p.R155W 0.86 deleterious(0.02) benign(0.006) TCGA-EE-A2MM-06 4 155719284 155719284 T G RBM46 Nonsense_Mutation p.L158* 0.80 TCGA-EE-A2MM-06 4 155719287 155719287 A T RBM46 Missense_Mutation p.D159V 0.80 tolerated(0.21) benign(0.109) TCGA-EE-A2MM-06 4 164246466 164246466 C T NPY1R Missense_Mutation p.E382K 0.80 tolerated_low_confidence(0.42) benign(0.292) TCGA-EE-A2MM-06 4 164246771 164246771 G A NPY1R Missense_Mutation p.T280I 0.91 deleterious(0.02) possibly_damaging(0.487) TCGA-EE-A2MM-06 4 164466772 164466772 C T MARCH1 Missense_Mutation p.E183K 0.83 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 4 1730378 1730378 C T TACC3 Missense_Mutation p.P417S 0.23 deleterious(0.05) benign(0.321) TCGA-EE-A2MM-06 4 174450253 174450253 G A HAND2 Missense_Mutation p.S63F 0.78 deleterious(0.02) possibly_damaging(0.462) TCGA-EE-A2MM-06 4 183675687 183675687 G A TENM3 Silent p.V1389V 1.00 TCGA-EE-A2MM-06 4 1843137 1843137 G A LETM1 Silent p.I177I 0.26 TCGA-EE-A2MM-06 4 187201261 187201261 G A F11 Missense_Mutation p.R284K 0.96 tolerated(0.71) benign(0.011) TCGA-EE-A2MM-06 4 25270159 25270159 T C PI4K2B Silent p.F391F 0.91 TCGA-EE-A2MM-06 4 25419869 25419869 C T ANAPC4 Silent p.A764A 0.82 TCGA-EE-A2MM-06 4 2698261 2698261 G A FAM193A Missense_Mutation p.E859K 0.48 deleterious(0.05) benign(0.288) TCGA-EE-A2MM-06 4 40245414 40245414 G A RHOH Silent p.G136G 0.54 TCGA-EE-A2MM-06 4 68919610 68919610 C - TMPRSS11F 3'UTR 0.53 TCGA-EE-A2MM-06 4 76879000 76879000 G A SDAD1 Silent p.I526I 0.92 TCGA-EE-A2MM-06 4 79308703 79308703 C T FRAS1 Missense_Mutation p.P1275S 1.00 benign(0.005) TCGA-EE-A2MM-06 4 88533510 88533510 G A DSPP Missense_Mutation p.G58S 0.90 possibly_damaging(0.81) TCGA-EE-A2MM-06 5 127728875 127728875 C T FBN2 Missense_Mutation p.G473E 0.33 tolerated(0.13) possibly_damaging(0.636) TCGA-EE-A2MM-06 5 127800494 127800494 G A FBN2 Missense_Mutation p.P250L 0.28 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MM-06 5 134782085 134782085 C T C5orf20 Silent p.R238R 0.18 TCGA-EE-A2MM-06 5 135276702 135276702 C T FBXL21 RNA 0.21 TCGA-EE-A2MM-06 5 13700913 13700913 C T DNAH5 Nonsense_Mutation p.W4520* 0.33 TCGA-EE-A2MM-06 5 137589837 137589837 C A GFRA3 Silent p.V266V 0.31 TCGA-EE-A2MM-06 5 13922244 13922244 G A DNAH5 Missense_Mutation p.S211L 0.37 benign(0.001) TCGA-EE-A2MM-06 5 140475536 140475536 C T PCDHB2 Nonsense_Mutation p.Q388* 0.52 TCGA-EE-A2MM-06 5 140552341 140552341 G A PCDHB7 5'UTR 0.58 TCGA-EE-A2MM-06 5 140552891 140552891 G A PCDHB7 Missense_Mutation p.D159N 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MM-06 5 140554422 140554422 C T PCDHB7 Missense_Mutation p.P669L 0.18 deleterious_low_confidence(0.01) benign(0.199) TCGA-EE-A2MM-06 5 140742023 140742023 T C PCDHGB2 Missense_Mutation p.L774S 0.27 tolerated(0.45) benign(0.104) TCGA-EE-A2MM-06 5 143533 143533 C T PLEKHG4B Missense_Mutation p.R220C 0.50 tolerated(1) benign(0) TCGA-EE-A2MM-06 5 147051375 147051375 C T JAKMIP2 5'UTR 0.47 TCGA-EE-A2MM-06 5 150889703 150889703 C A FAT2 Missense_Mutation p.G3980W 0.46 probably_damaging(0.999) TCGA-EE-A2MM-06 5 155771593 155771593 G A SGCD Missense_Mutation p.R33Q 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 5 156731368 156731368 C T CYFIP2 Silent p.L237L 0.25 TCGA-EE-A2MM-06 5 15936881 15936881 C T FBXL7 Silent p.Y354Y 0.47 TCGA-EE-A2MM-06 5 162866446 162866447 - TA CCNG1 Frame_Shift_Ins p.T63* 0.24 TCGA-EE-A2MM-06 5 174869361 174869361 C T DRD1 Missense_Mutation p.G248R 0.51 tolerated(0.6) benign(0.02) TCGA-EE-A2MM-06 5 176004529 176004529 G A CDHR2 Missense_Mutation p.E442K 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 5 178555107 178555107 C T ADAMTS2 Missense_Mutation p.G824R 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MM-06 5 19473520 19473520 G A CDH18 Missense_Mutation p.P730S 0.26 deleterious(0) possibly_damaging(0.589) TCGA-EE-A2MM-06 5 24509862 24509862 G A CDH10 Missense_Mutation p.P357S 0.44 tolerated(0.13) probably_damaging(0.979) TCGA-EE-A2MM-06 5 26881688 26881688 C T CDH9 Missense_Mutation p.E643K 0.33 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A2MM-06 5 31983716 31983716 C T PDZD2 Missense_Mutation p.S311L 0.63 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MM-06 5 32088006 32088006 G A PDZD2 Silent p.R1484R 0.57 TCGA-EE-A2MM-06 5 35065992 35065992 G C PRLR Missense_Mutation p.S356R 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 5 38438424 38438424 C G EGFLAM Silent p.S777S 0.29 TCGA-EE-A2MM-06 5 40947888 40947888 C T C7 Missense_Mutation p.S308L 0.67 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MM-06 5 41004526 41004526 G A MROH2B Silent p.I1372I 0.50 TCGA-EE-A2MM-06 5 41065530 41065530 G A MROH2B Silent p.F88F 0.33 TCGA-EE-A2MM-06 5 41181619 41181619 C T C6 Missense_Mutation p.D257N 0.38 tolerated(0.16) benign(0.055) TCGA-EE-A2MM-06 5 54674184 54674184 C T SKIV2L2 Missense_Mutation p.P618L 0.50 deleterious(0.04) benign(0.287) TCGA-EE-A2MM-06 5 63802466 63802466 G A RGS7BP Silent p.P5P 0.43 TCGA-EE-A2MM-06 5 79034731 79034731 G A CMYA5 Silent p.E3381E 0.75 TCGA-EE-A2MM-06 5 79616905 79616905 A G SPZ1 Missense_Mutation p.T291A 0.53 tolerated(0.11) benign(0.337) TCGA-EE-A2MM-06 5 82833200 82833200 G A VCAN Missense_Mutation p.E1460K 0.45 tolerated(0.15) benign(0.091) TCGA-EE-A2MM-06 5 89940622 89940622 G A GPR98 Missense_Mutation p.G945E 0.48 probably_damaging(0.972) TCGA-EE-A2MM-06 6 100056660 100056660 C T PRDM13 Missense_Mutation p.S63F 0.43 deleterious(0.05) probably_damaging(0.929) TCGA-EE-A2MM-06 6 100838966 100838966 C T SIM1 Silent p.G524G 0.47 TCGA-EE-A2MM-06 6 100841650 100841650 G A SIM1 Missense_Mutation p.S428F 0.39 tolerated(0.08) possibly_damaging(0.879) TCGA-EE-A2MM-06 6 101166001 101166001 G A ASCC3 Nonsense_Mutation p.R677* 0.38 TCGA-EE-A2MM-06 6 10924846 10924846 C T SYCP2L Missense_Mutation p.S397F 0.27 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2MM-06 6 112386105 112386105 G T WISP3 Missense_Mutation p.C183F 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2MM-06 6 116442256 116442256 C T COL10A1 Silent p.G341G 0.48 TCGA-EE-A2MM-06 6 117609790 117609790 C T ROS1 Silent p.R2303R 0.48 TCGA-EE-A2MM-06 6 128134784 128134784 G A THEMIS Silent p.I334I 0.53 TCGA-EE-A2MM-06 6 139164127 139164127 G A ECT2L Nonsense_Mutation p.W118* 0.53 TCGA-EE-A2MM-06 6 149855870 149855870 G A PPIL4 Missense_Mutation p.P169S 0.37 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A2MM-06 6 165806224 165806224 G A PDE10A Missense_Mutation p.P523S 0.36 deleterious(0.01) benign(0.111) TCGA-EE-A2MM-06 6 165809912 165809912 G A PDE10A Missense_Mutation p.R439W 0.13 deleterious(0) possibly_damaging(0.724) TCGA-EE-A2MM-06 6 167571229 167571229 C T GPR31 Missense_Mutation p.G31S 0.42 tolerated(0.1) probably_damaging(0.956) TCGA-EE-A2MM-06 6 167571230 167571230 C T GPR31 Silent p.L30L 0.42 TCGA-EE-A2MM-06 6 29407980 29407980 G A OR10C1 Missense_Mutation p.R63H 0.11 tolerated(0.13) possibly_damaging(0.549) TCGA-EE-A2MM-06 6 29693014 29693014 G A HLA-F Missense_Mutation p.G273R 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MM-06 6 29976088 29976088 G A ZNRD1-AS1 Intron 0.33 TCGA-EE-A2MM-06 6 30624244 30624244 G A DHX16 Missense_Mutation p.P785L 0.16 deleterious(0) unknown(0) TCGA-EE-A2MM-06 6 31475269 31475269 C T MICB Missense_Mutation p.P329S 0.17 tolerated(0.4) benign(0.158) TCGA-EE-A2MM-06 6 31748828 31748828 G A VARS Missense_Mutation p.P873S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 6 32037545 32037545 G A TNXB Missense_Mutation p.S1791F 0.74 probably_damaging(0.995) TCGA-EE-A2MM-06 6 32135790 32135790 C T EGFL8 3'UTR 0.74 TCGA-EE-A2MM-06 6 33290773 33290773 T C DAXX 5'UTR 0.73 TCGA-EE-A2MM-06 6 35211487 35211487 G A SCUBE3 Missense_Mutation p.D676N 0.12 tolerated(0.15) possibly_damaging(0.756) TCGA-EE-A2MM-06 6 35967836 35967836 G A SLC26A8 Silent p.I126I 0.38 TCGA-EE-A2MM-06 6 36103816 36103816 C T MAPK13 Silent p.V146V 0.21 TCGA-EE-A2MM-06 6 36887380 36887380 C T C6orf89 Silent p.I291I 0.13 TCGA-EE-A2MM-06 6 36993606 36993606 G A FGD2 Silent p.L499L 0.38 TCGA-EE-A2MM-06 6 41303997 41303997 G A NCR2 Missense_Mutation p.M75I 0.19 tolerated(0.28) benign(0) TCGA-EE-A2MM-06 6 41711064 41711064 G T PGC Missense_Mutation p.S131Y 0.39 tolerated(0.13) benign(0.094) TCGA-EE-A2MM-06 6 43040584 43040584 C T KLC4 Missense_Mutation p.T522M 0.15 deleterious(0.01) possibly_damaging(0.832) TCGA-EE-A2MM-06 6 43323708 43323708 G A ZNF318 Missense_Mutation p.P455L 0.37 benign(0.044) TCGA-EE-A2MM-06 6 46979926 46979926 G A GPR110 Silent p.F311F 0.15 TCGA-EE-A2MM-06 6 49427140 49427140 G A MUT Missense_Mutation p.H14Y 0.15 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A2MM-06 6 5404775 5404775 T C FARS2 Silent p.L205L 0.29 TCGA-EE-A2MM-06 6 55625290 55625290 C T BMP5 Missense_Mutation p.E357K 0.22 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MM-06 6 56882095 56882095 G A BEND6 Missense_Mutation p.E204K 0.21 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2MM-06 6 6266803 6266803 G A F13A1 Missense_Mutation p.P187S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 6 70745815 70745815 G A COL19A1 Missense_Mutation p.G385E 0.53 deleterious(0.03) unknown(0) TCGA-EE-A2MM-06 6 7583323 7583323 G A DSP Missense_Mutation p.R1943K 0.11 benign(0) TCGA-EE-A2MM-06 6 75853084 75853084 C T COL12A1 Missense_Mutation p.D1571N 0.38 benign(0.002) TCGA-EE-A2MM-06 6 80629208 80629208 C T ELOVL4 Missense_Mutation p.G200R 0.34 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MM-06 6 87725481 87725481 C T HTR1E Silent p.I143I 0.45 TCGA-EE-A2MM-06 6 88757777 88757777 G A SPACA1 Missense_Mutation p.E52K 0.48 tolerated_low_confidence(0.11) benign(0.033) TCGA-EE-A2MM-06 6 90576844 90576844 C T CASP8AP2 RNA 0.47 TCGA-EE-A2MM-06 6 97339238 97339238 C T NDUFAF4 Silent p.P90P 0.53 TCGA-EE-A2MM-06 6 97615961 97615961 G A MMS22L Missense_Mutation p.P999S 0.41 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A2MM-06 6 99860603 99860603 C T PNISR Nonsense_Mutation p.W34* 0.52 TCGA-EE-A2MM-06 7 100352875 100352875 G A ZAN Missense_Mutation p.E1051K 0.41 unknown(0) TCGA-EE-A2MM-06 7 103270438 103270438 C T RELN Missense_Mutation p.G884E 0.54 tolerated(0.17) probably_damaging(1) TCGA-EE-A2MM-06 7 107684225 107684225 G A LAMB4 Silent p.F1481F 0.39 TCGA-EE-A2MM-06 7 111484899 111484899 G A DOCK4 Silent p.L886L 0.36 TCGA-EE-A2MM-06 7 117251700 117251700 G A CFTR Missense_Mutation p.G1069R 0.38 tolerated(0.31) benign(0.011) TCGA-EE-A2MM-06 7 117865049 117865049 G A ANKRD7 Silent p.Q55Q 0.43 TCGA-EE-A2MM-06 7 126173718 126173718 G A GRM8 Missense_Mutation p.P573L 0.39 deleterious(0.01) benign(0.04) TCGA-EE-A2MM-06 7 134216695 134216695 G A AKR1B10 Silent p.R90R 0.37 TCGA-EE-A2MM-06 7 138713621 138713621 G A ZC3HAV1L Missense_Mutation p.S196F 0.48 tolerated(0.29) benign(0.406) TCGA-EE-A2MM-06 7 141752626 141752626 G A MGAM Missense_Mutation p.D1001N 0.45 tolerated(0.58) benign(0.001) TCGA-EE-A2MM-06 7 141805690 141805690 G A MGAM Silent p.%3D 0.40 TCGA-EE-A2MM-06 7 142180769 142180769 C T TRBV6-5 Silent p.Q30Q 0.20 TCGA-EE-A2MM-06 7 142231820 142231820 C T TRBV10-1 Missense_Mutation p.E33K 0.46 tolerated(1) benign(0.003) TCGA-EE-A2MM-06 7 142239570 142239570 C T TRBV9 Missense_Mutation p.D104N 0.22 deleterious(0.01) possibly_damaging(0.651) TCGA-EE-A2MM-06 7 142239579 142239579 C T TRBV9 Missense_Mutation p.E101K 0.18 deleterious(0.02) possibly_damaging(0.461) TCGA-EE-A2MM-06 7 142612183 142612183 C T TRPV5 Missense_Mutation p.M440I 0.44 tolerated(0.05) possibly_damaging(0.507) TCGA-EE-A2MM-06 7 143807322 143807322 C T OR2A2 Missense_Mutation p.S216F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 7 143826661 143826661 C T OR2A14 Silent p.F152F 0.40 TCGA-EE-A2MM-06 7 149523643 149523643 G A SSPO RNA 0.44 TCGA-EE-A2MM-06 7 150771142 150771142 C T SLC4A2 Missense_Mutation p.P851L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 7 150771143 150771143 C T SLC4A2 Silent p.P851P 0.49 TCGA-EE-A2MM-06 7 1590456 1590456 C T TMEM184A Missense_Mutation p.E128K 0.40 deleterious(0.05) possibly_damaging(0.665) TCGA-EE-A2MM-06 7 2472823 2472823 C T CHST12 Silent p.I183I 0.42 TCGA-EE-A2MM-06 7 2564882 2564882 G A LFNG Missense_Mutation p.A171T 0.24 tolerated(0.11) benign(0.036) TCGA-EE-A2MM-06 7 28547242 28547242 C T CREB5 Missense_Mutation p.P60S 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 7 2946452 2946452 C T CARD11 Silent p.T1095T 0.63 TCGA-EE-A2MM-06 7 31146119 31146119 G A ADCYAP1R1 Missense_Mutation p.E438K 0.34 deleterious(0) possibly_damaging(0.507) TCGA-EE-A2MM-06 7 36397176 36397176 C T KIAA0895 Missense_Mutation p.E68K 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MM-06 7 38305114 38305114 C T TRGC1 Missense_Mutation p.G56E 0.45 tolerated(1) benign(0) TCGA-EE-A2MM-06 7 39247156 39247156 C T POU6F2 Nonsense_Mutation p.Q150* 0.32 TCGA-EE-A2MM-06 7 43906416 43906416 G A MRPS24 Missense_Mutation p.P129L 0.46 deleterious(0) benign(0.143) TCGA-EE-A2MM-06 7 44073723 44073723 C T RASA4CP RNA 0.59 TCGA-EE-A2MM-06 7 51092937 51092937 G A COBL Missense_Mutation p.P1213S 0.73 tolerated(0.53) benign(0.012) TCGA-EE-A2MM-06 7 51096086 51096086 G A COBL Silent p.L903L 0.52 TCGA-EE-A2MM-06 7 51111251 51111251 G A COBL Missense_Mutation p.S412F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 7 5642960 5642960 C T FSCN1 Missense_Mutation p.T302I 0.41 deleterious(0.01) possibly_damaging(0.49) TCGA-EE-A2MM-06 7 65435305 65435305 G A GUSB Silent p.T480T 0.34 TCGA-EE-A2MM-06 7 73123016 73123016 C A STX1A Silent p.V37V 0.09 TCGA-EE-A2MM-06 7 81350155 81350155 G A HGF Missense_Mutation p.R393C 0.47 deleterious(0.04) possibly_damaging(0.832) TCGA-EE-A2MM-06 7 82584306 82584306 C T PCLO Missense_Mutation p.G1988E 0.35 unknown(0) TCGA-EE-A2MM-06 7 98565117 98565117 C A TRRAP Silent p.T2429T 0.43 TCGA-EE-A2MM-06 8 101092463 101092463 G A RGS22 Missense_Mutation p.P80S 0.65 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MM-06 8 10467799 10467799 G A RP1L1 Missense_Mutation p.A1270V 0.59 benign(0.29) TCGA-EE-A2MM-06 8 110516656 110516656 G A PKHD1L1 Silent p.V3643V 0.44 TCGA-EE-A2MM-06 8 113697808 113697808 G A CSMD3 Missense_Mutation p.S770F 0.29 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MM-06 8 118170045 118170045 G A SLC30A8 Missense_Mutation p.M178I 0.40 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A2MM-06 8 125047586 125047586 C T FER1L6 Silent p.S785S 0.50 TCGA-EE-A2MM-06 8 125076600 125076600 C T FER1L6 Missense_Mutation p.S1114L 0.48 tolerated(0.38) benign(0.001) TCGA-EE-A2MM-06 8 125990020 125990020 C T ZNF572 Missense_Mutation p.P504S 0.31 tolerated_low_confidence(0.83) benign(0.015) TCGA-EE-A2MM-06 8 139144708 139144708 C T FAM135B 3'UTR 0.80 TCGA-EE-A2MM-06 8 143784501 143784501 C T LY6K Intron 0.61 TCGA-EE-A2MM-06 8 145096185 145096185 G A SPATC1 Silent p.L453L 0.65 TCGA-EE-A2MM-06 8 2044252 2044252 C T MYOM2 Missense_Mutation p.P764L 0.21 tolerated(0.13) benign(0.012) TCGA-EE-A2MM-06 8 2044253 2044253 C T MYOM2 Silent p.P764P 0.23 TCGA-EE-A2MM-06 8 24201063 24201063 C T ADAM28 Silent p.I652I 0.61 TCGA-EE-A2MM-06 8 24262862 24262862 G A ADAMDEC1 3'UTR 0.50 TCGA-EE-A2MM-06 8 27321465 27321465 G A CHRNA2 Silent p.L165L 0.50 TCGA-EE-A2MM-06 8 29003815 29003815 G A KIF13B Intron 0.33 TCGA-EE-A2MM-06 8 30699564 30699564 C T TEX15 Missense_Mutation p.E2324K 0.31 deleterious(0.05) benign(0.287) TCGA-EE-A2MM-06 8 32505765 32505765 C T NRG1 Intron 0.31 TCGA-EE-A2MM-06 8 39645760 39645760 G A ADAM2 Missense_Mutation p.S218L 0.47 deleterious(0.04) benign(0.063) TCGA-EE-A2MM-06 8 41834820 41834820 G A KAT6A Nonsense_Mutation p.R357* 0.67 TCGA-EE-A2MM-06 8 42234552 42234552 G A DKK4 Silent p.A4A 0.53 TCGA-EE-A2MM-06 8 55537447 55537447 G A RP1 Missense_Mutation p.M335I 0.49 deleterious(0) possibly_damaging(0.586) TCGA-EE-A2MM-06 8 56436121 56436121 G A XKR4 Missense_Mutation p.E430K 0.27 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MM-06 8 56436225 56436225 C T XKR4 Silent p.I464I 0.28 TCGA-EE-A2MM-06 8 6794277 6794277 C T DEFA4 Missense_Mutation p.D49N 0.24 tolerated(0.37) probably_damaging(1) TCGA-EE-A2MM-06 8 75262797 75262797 C T GDAP1 Missense_Mutation p.S34L 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 8 77767503 77767503 G A ZFHX4 Silent p.E2782E 0.37 TCGA-EE-A2MM-06 9 101759282 101759282 G A COL15A1 Missense_Mutation p.E291K 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A2MM-06 9 101797334 101797334 G A COL15A1 Silent p.G706G 0.41 TCGA-EE-A2MM-06 9 111617666 111617666 G A ACTL7B Missense_Mutation p.S182L 0.40 deleterious(0) benign(0.195) TCGA-EE-A2MM-06 9 113170146 113170146 G A SVEP1 Silent p.I2578I 0.47 TCGA-EE-A2MM-06 9 114176929 114176929 G A KIAA0368 Silent p.I767I 0.64 TCGA-EE-A2MM-06 9 116835237 116835237 G A AMBP Missense_Mutation p.P175L 0.58 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MM-06 9 118950332 118950332 G A PAPPA Missense_Mutation p.D439N 0.28 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A2MM-06 9 119065225 119065225 C T PAPPA Missense_Mutation p.S1048F 0.64 deleterious(0) possibly_damaging(0.485) TCGA-EE-A2MM-06 9 125377205 125377205 C T OR1Q1 Silent p.L63L 0.46 TCGA-EE-A2MM-06 9 126214610 126214610 A T DENND1A Missense_Mutation p.I415N 0.40 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MM-06 9 131669672 131669672 C T LRRC8A Missense_Mutation p.P77S 0.32 tolerated(0.78) benign(0.003) TCGA-EE-A2MM-06 9 131669673 131669673 C T LRRC8A Missense_Mutation p.P77L 0.32 tolerated(0.42) benign(0.008) TCGA-EE-A2MM-06 9 135042139 135042139 C T NTNG2 5'UTR 0.59 TCGA-EE-A2MM-06 9 135273568 135273568 G A TTF1 Silent p.I579I 0.39 TCGA-EE-A2MM-06 9 136516773 136516773 G A DBH Silent p.G403G 0.28 TCGA-EE-A2MM-06 9 137710734 137710734 C T COL5A1 Missense_Mutation p.P1460L 0.16 unknown(0) TCGA-EE-A2MM-06 9 138675892 138675892 A G KCNT1 Missense_Mutation p.N955S 0.46 tolerated(0.1) benign(0.081) TCGA-EE-A2MM-06 9 139317583 139317583 C T PMPCA Missense_Mutation p.S482F 0.39 deleterious(0.02) benign(0.125) TCGA-EE-A2MM-06 9 139418180 139418180 G A NOTCH1 Missense_Mutation p.P131L 0.47 tolerated(0.23) probably_damaging(0.998) TCGA-EE-A2MM-06 9 140109922 140109922 C T NDOR1 Missense_Mutation p.P413S 0.45 deleterious(0) possibly_damaging(0.675) TCGA-EE-A2MM-06 9 140441761 140441761 G T PNPLA7 Silent p.R65R 0.44 TCGA-EE-A2MM-06 9 15000308 15000308 C T RP11-54D18.3 RNA 0.50 TCGA-EE-A2MM-06 9 19378419 19378419 G A RPS6 Missense_Mutation p.S148F 0.34 deleterious(0) benign(0.054) TCGA-EE-A2MM-06 9 21141194 21141194 C T IFNW1 Missense_Mutation p.V126I 0.33 deleterious(0.02) benign(0.405) TCGA-EE-A2MM-06 9 21141195 21141195 C T IFNW1 Silent p.Q125Q 0.33 TCGA-EE-A2MM-06 9 21217128 21217128 G A IFNA16 Silent p.F59F 0.45 TCGA-EE-A2MM-06 9 32630161 32630161 C T TAF1L Missense_Mutation p.R1806K 0.42 tolerated_low_confidence(0.12) benign(0.284) TCGA-EE-A2MM-06 9 32631374 32631374 C T TAF1L Missense_Mutation p.V1402M 0.37 deleterious(0) possibly_damaging(0.778) TCGA-EE-A2MM-06 9 32633672 32633672 G A TAF1L Missense_Mutation p.R636C 0.36 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MM-06 9 35044551 35044551 G A C9orf131 Missense_Mutation p.G642D 0.49 tolerated(0.14) possibly_damaging(0.744) TCGA-EE-A2MM-06 9 35094005 35094005 C G PIGO Missense_Mutation p.W224C 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MM-06 9 74828907 74828907 G A GDA Missense_Mutation p.R193K 0.41 tolerated(0.24) benign(0.354) TCGA-EE-A2MM-06 9 77377279 77377279 C T TRPM6 Missense_Mutation p.M1436I 0.61 tolerated_low_confidence(0.31) benign(0.001) TCGA-EE-A2MM-06 9 77435218 77435218 A C TRPM6 Splice_Site p.X378_splice 0.56 TCGA-EE-A2MM-06 9 77454999 77454999 C G TRPM6 Missense_Mutation p.G162A 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MM-06 9 77563005 77563005 G A C9orf40 Nonsense_Mutation p.Q182* 0.46 TCGA-EE-A2MM-06 9 80537112 80537112 T A GNAQ Missense_Mutation p.T96S 0.43 tolerated(0.23) benign(0.001) TCGA-EE-A2MM-06 9 84608932 84608932 G A SPATA31D1 Missense_Mutation p.E1183K 0.44 tolerated(0.21) benign(0.406) TCGA-EE-A2MM-06 9 98209359 98209359 G A PTCH1 Silent p.P1393P 0.50 TCGA-EE-A2MM-06 X 100278593 100278593 A G TRMT2B Missense_Mutation p.F208L 0.94 deleterious(0.04) benign(0.053) TCGA-EE-A2MM-06 X 117053615 117053615 T A KLHL13 Nonsense_Mutation p.K150* 0.88 TCGA-EE-A2MM-06 X 129771274 129771274 G A ENOX2 Missense_Mutation p.H443Y 0.87 tolerated(1) benign(0.05) TCGA-EE-A2MM-06 X 130678393 130678393 G A OR13H1 Missense_Mutation p.A116T 0.96 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MM-06 X 131212560 131212560 G A FRMD7 Silent p.V495V 0.83 TCGA-EE-A2MM-06 X 134856814 134856814 G A CT45A1 3'UTR 0.10 TCGA-EE-A2MM-06 X 138729049 138729049 C T MCF2 Silent p.K13K 0.89 TCGA-EE-A2MM-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.85 deleterious_low_confidence(0) benign(0.006) TCGA-EE-A2MM-06 X 154294261 154294261 G A MTCP1 Missense_Mutation p.P9S 0.82 tolerated(0.73) benign(0.101) TCGA-EE-A2MM-06 X 16761838 16761838 C T SYAP1 Silent p.F150F 0.82 TCGA-EE-A2MM-06 X 1712776 1712776 C T AKAP17A Silent p.L141L 0.79 TCGA-EE-A2MM-06 X 38240680 38240680 C T OTC Silent p.A128A 0.95 TCGA-EE-A2MM-06 X 44703447 44703447 C T DUSP21 Silent p.S23S 0.79 TCGA-EE-A2MM-06 X 47271915 47271915 G A ZNF157 Missense_Mutation p.G148D 0.81 tolerated(0.53) benign(0.001) TCGA-EE-A2MM-06 X 49066207 49066207 G A CACNA1F Missense_Mutation p.T1579I 0.88 deleterious(0) benign(0.387) TCGA-EE-A2MM-06 X 49958743 49958743 G A AKAP4 Silent p.S207S 0.84 TCGA-EE-A2MM-06 X 75650688 75650688 C T MAGEE1 Missense_Mutation p.R789C 0.82 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MM-06 X 84363848 84363848 C T SATL1 Missense_Mutation p.E43K 0.82 tolerated(0.07) possibly_damaging(0.486) TCGA-EE-A2MM-06 X 9714170 9714170 G A GPR143 Missense_Mutation p.A191V 0.88 tolerated(0.08) probably_damaging(0.91) TCGA-EE-A2MN-06 10 102705132 102705132 C T FAM178A Missense_Mutation p.R935C 0.22 deleterious(0.01) benign(0.008) TCGA-EE-A2MN-06 10 108439087 108439087 T C SORCS1 Missense_Mutation p.N556S 0.32 tolerated(0.14) benign(0.259) TCGA-EE-A2MN-06 10 121618605 121618605 G A MCMBP Missense_Mutation p.P78L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MN-06 10 133948635 133948635 G A JAKMIP3 Missense_Mutation p.A314T 0.23 tolerated(0.83) benign(0.026) TCGA-EE-A2MN-06 10 15729985 15729985 G A ITGA8 Silent p.S132S 0.31 TCGA-EE-A2MN-06 10 24762210 24762210 C A KIAA1217 Silent p.P300P 0.46 TCGA-EE-A2MN-06 10 33481310 33481310 C T NRP1 Nonsense_Mutation p.W654* 0.37 TCGA-EE-A2MN-06 10 45652481 45652481 G A RP11-445N18.7 RNA 0.44 TCGA-EE-A2MN-06 10 49431253 49431253 C T FRMPD2 Nonsense_Mutation p.W410* 0.38 TCGA-EE-A2MN-06 10 96201761 96201761 C A TBC1D12 Silent p.S360S 0.29 TCGA-EE-A2MN-06 11 108199955 108199955 C T ATM Nonsense_Mutation p.Q2433* 0.70 TCGA-EE-A2MN-06 11 119155775 119155775 C T CBL Missense_Mutation p.P510S 0.63 tolerated_low_confidence(0.48) benign(0.006) TCGA-EE-A2MN-06 11 1263109 1263109 G A MUC5B Missense_Mutation p.G1667S 0.82 unknown(0) TCGA-EE-A2MN-06 11 44286625 44286625 G A ALX4 Missense_Mutation p.P339S 0.50 tolerated(0.31) benign(0.269) TCGA-EE-A2MN-06 11 44286626 44286626 G A ALX4 Silent p.P338P 0.52 TCGA-EE-A2MN-06 11 55433545 55433545 G A OR4C6 Missense_Mutation p.M301I 0.81 tolerated(0.41) benign(0.003) TCGA-EE-A2MN-06 11 76990378 76990378 G A GDPD4 Silent p.I40I 0.37 TCGA-EE-A2MN-06 12 112622260 112622260 C T HECTD4 Missense_Mutation p.V3358I 0.26 benign(0.001) TCGA-EE-A2MN-06 12 11461664 11461664 C T PRB4 Missense_Mutation p.G85R 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MN-06 12 12814919 12814919 A G GPR19 Missense_Mutation p.V155A 0.25 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MN-06 12 129467575 129467575 G A GLT1D1 Silent p.Q247Q 0.37 TCGA-EE-A2MN-06 12 130856078 130856078 C T PIWIL1 Missense_Mutation p.L841F 0.38 deleterious(0.03) possibly_damaging(0.585) TCGA-EE-A2MN-06 12 4872486 4872486 C T GALNT8 Missense_Mutation p.T476I 0.39 deleterious(0.03) possibly_damaging(0.577) TCGA-EE-A2MN-06 12 57112329 57112329 G A NACA Intron 0.29 TCGA-EE-A2MN-06 12 7528574 7528574 G A CD163L1 Missense_Mutation p.P803L 0.44 tolerated(0.06) probably_damaging(0.973) TCGA-EE-A2MN-06 12 8618204 8618204 G C CLEC6A Silent p.V116V 0.32 TCGA-EE-A2MN-06 12 95422272 95422272 T G NR2C1 Missense_Mutation p.L474F 0.30 tolerated(0.16) possibly_damaging(0.588) TCGA-EE-A2MN-06 12 97078996 97078996 C T C12orf55 Silent p.V1998V 0.39 TCGA-EE-A2MN-06 13 23907292 23907292 G A SACS Missense_Mutation p.H3575Y 0.35 benign(0.022) TCGA-EE-A2MN-06 13 26542775 26542775 G A ATP8A2 Missense_Mutation p.R1112Q 0.30 tolerated(0.79) benign(0.117) TCGA-EE-A2MN-06 13 58206800 58206800 G A PCDH17 Silent p.R40R 0.28 TCGA-EE-A2MN-06 14 101513689 101513689 C T MIR539 RNA 0.70 TCGA-EE-A2MN-06 14 23058125 23058125 G A DAD1 5'UTR 0.57 TCGA-EE-A2MN-06 14 72054846 72054846 G A SIPA1L1 Missense_Mutation p.R86K 0.55 tolerated(0.81) benign(0.297) TCGA-EE-A2MN-06 15 31295094 31295094 C T TRPM1 Missense_Mutation p.R1287Q 0.26 tolerated(0.08) benign(0.016) TCGA-EE-A2MN-06 15 34021145 34021145 G A RYR3 Missense_Mutation p.G2374D 0.30 probably_damaging(0.93) TCGA-EE-A2MN-06 15 39910373 39910373 G A FSIP1 Missense_Mutation p.S421F 0.30 deleterious(0.04) benign(0.026) TCGA-EE-A2MN-06 15 41476472 41476472 C T EXD1 Missense_Mutation p.G401E 0.35 tolerated(0.15) benign(0.154) TCGA-EE-A2MN-06 15 43244481 43244481 G A UBR1 Silent p.F1667F 0.32 TCGA-EE-A2MN-06 15 51687050 51687050 G A GLDN Missense_Mutation p.G187E 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MN-06 15 52656776 52656776 A G MYO5A Missense_Mutation p.L1095P 0.35 deleterious(0) probably_damaging(0.944) TCGA-EE-A2MN-06 15 64982719 64982719 G A OAZ2 Silent p.L69L 0.34 TCGA-EE-A2MN-06 15 69007647 69007647 C T CORO2B Silent p.L322L 0.54 TCGA-EE-A2MN-06 15 81575018 81575018 C T IL16 Missense_Mutation p.P374S 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MN-06 15 84690205 84690205 C T ADAMTSL3 Silent p.T1439T 0.33 TCGA-EE-A2MN-06 16 15813103 15813103 C T MYH11 Silent p.E1722E 0.47 TCGA-EE-A2MN-06 16 21261292 21261292 G A ANKS4B Silent p.L135L 0.42 TCGA-EE-A2MN-06 16 31424248 31424248 G A ITGAD Missense_Mutation p.M599I 0.41 tolerated(0.12) benign(0.005) TCGA-EE-A2MN-06 16 55862760 55862760 G A CES1 Missense_Mutation p.P60L 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MN-06 16 57787310 57787310 G A KATNB1 Silent p.Q352Q 0.32 TCGA-EE-A2MN-06 16 57790379 57790379 G A KATNB1 Silent p.E610E 0.31 TCGA-EE-A2MN-06 16 57792727 57792727 G A KIFC3 3'UTR 0.52 TCGA-EE-A2MN-06 16 57792785 57792785 G A KIFC3 3'UTR 0.41 TCGA-EE-A2MN-06 16 57793672 57793672 G A KIFC3 Missense_Mutation p.P815L 0.33 deleterious_low_confidence(0.01) benign(0.185) TCGA-EE-A2MN-06 16 57794744 57794744 G A KIFC3 Missense_Mutation p.A709V 0.32 tolerated(0.47) benign(0.217) TCGA-EE-A2MN-06 16 78458916 78458916 C T WWOX Missense_Mutation p.P252L 0.39 tolerated(0.1) possibly_damaging(0.55) TCGA-EE-A2MN-06 17 12883539 12883539 C T ARHGAP44 Missense_Mutation p.T643I 0.50 deleterious(0) benign(0.372) TCGA-EE-A2MN-06 17 36288274 36288274 G A TBC1D3F Missense_Mutation p.M120I 0.08 tolerated(1) benign(0.001) TCGA-EE-A2MN-06 17 39673078 39673078 C T KRT15 Silent p.L240L 0.33 TCGA-EE-A2MN-06 17 72610156 72610156 C T CD300E Silent p.R135R 0.25 TCGA-EE-A2MN-06 17 74005145 74005145 C T EVPL Missense_Mutation p.D1381N 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MN-06 17 74287236 74287236 G A QRICH2 Missense_Mutation p.P1025L 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MN-06 17 74719857 74719857 G A JMJD6 Missense_Mutation p.P268S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MN-06 17 79650952 79650952 G A ARL16 5'UTR 0.88 TCGA-EE-A2MN-06 18 52265075 52265075 T G DYNAP Missense_Mutation p.M111R 0.54 deleterious(0) benign(0.013) TCGA-EE-A2MN-06 19 10078752 10078752 G A COL5A3 Missense_Mutation p.P1440S 0.25 unknown(0) TCGA-EE-A2MN-06 19 16060184 16060184 C T OR10H4 Missense_Mutation p.R123C 0.33 deleterious(0.02) benign(0.052) TCGA-EE-A2MN-06 19 19040164 19040164 C G HOMER3 3'UTR 0.45 TCGA-EE-A2MN-06 19 23937634 23937634 C T ZNF681 Missense_Mutation p.E73K 0.39 tolerated(1) benign(0) TCGA-EE-A2MN-06 19 39963709 39963709 C T SUPT5H Missense_Mutation p.S738F 0.31 deleterious(0) probably_damaging(0.927) TCGA-EE-A2MN-06 19 4298316 4298316 C T TMIGD2 Missense_Mutation p.V25M 0.52 deleterious(0) probably_damaging(0.963) TCGA-EE-A2MN-06 19 47259820 47259820 C T FKRP Silent p.D371D 0.14 TCGA-EE-A2MN-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.28 deleterious(0.01) possibly_damaging(0.895) TCGA-EE-A2MN-06 19 9062546 9062546 G A MUC16 Silent p.L8300L 0.53 TCGA-EE-A2MN-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.35 deleterious(0.01) benign(0.045) TCGA-EE-A2MN-06 1 145441200 145441202 CAA - TXNIP In_Frame_Del p.N389del 0.47 TCGA-EE-A2MN-06 1 145587474 145587474 T C NUDT17 Silent p.Q202Q 0.27 TCGA-EE-A2MN-06 1 150525537 150525537 G A ADAMTSL4 Missense_Mutation p.S81N 0.26 tolerated(0.34) benign(0.079) TCGA-EE-A2MN-06 1 153177401 153177401 C T LELP1 Missense_Mutation p.P73L 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MN-06 1 159832361 159832361 C T VSIG8 5'UTR 0.47 TCGA-EE-A2MN-06 1 161953953 161953953 C T OLFML2B Missense_Mutation p.D589N 0.47 deleterious(0) possibly_damaging(0.449) TCGA-EE-A2MN-06 1 16265266 16265266 G A SPEN Silent p.E3586E 0.36 TCGA-EE-A2MN-06 1 166819622 166819622 C G POGK Silent p.T602T 0.33 TCGA-EE-A2MN-06 1 197390437 197390437 C T CRB1 Silent p.F493F 0.19 TCGA-EE-A2MN-06 1 209799004 209799004 G A LAMB3 Silent p.I655I 0.24 TCGA-EE-A2MN-06 1 226033024 226033024 C T EPHX1 Silent p.F448F 0.69 TCGA-EE-A2MN-06 1 234744219 234744219 G A IRF2BP2 Missense_Mutation p.A341V 0.24 deleterious(0.01) possibly_damaging(0.483) TCGA-EE-A2MN-06 1 235299069 235299069 G A RBM34 Silent p.A302A 0.58 TCGA-EE-A2MN-06 1 236148724 236148724 T C NID1 Missense_Mutation p.R1004G 0.23 deleterious(0) probably_damaging(0.913) TCGA-EE-A2MN-06 1 24463794 24463794 C T IL22RA1 Missense_Mutation p.G61E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MN-06 1 32256742 32256742 G A SPOCD1 Missense_Mutation p.S1038F 0.57 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MN-06 1 33585841 33585841 G A ADC 3'UTR 0.46 TCGA-EE-A2MN-06 1 33998708 33998708 G A CSMD2 Silent p.S3227S 0.44 TCGA-EE-A2MN-06 1 57140109 57140109 G A PRKAA2 Silent p.Q50Q 0.39 TCGA-EE-A2MN-06 1 89732656 89732656 G A GBP5 Silent p.S203S 0.31 TCGA-EE-A2MN-06 20 23345626 23345626 G A GZF1 Silent p.K202K 0.44 TCGA-EE-A2MN-06 20 52198037 52198037 G A ZNF217 Silent p.D443D 0.36 TCGA-EE-A2MN-06 20 56179658 56179658 C T ZBP1 Missense_Mutation p.E421K 0.32 tolerated(0.87) benign(0.003) TCGA-EE-A2MN-06 20 58545215 58545215 G A CDH26 Missense_Mutation p.G69R 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MN-06 20 9417698 9417698 G A PLCB4 Missense_Mutation p.G876E 0.50 tolerated(0.36) benign(0.037) TCGA-EE-A2MN-06 21 38390367 38390367 G A RIPPLY3 Missense_Mutation p.E145K 0.65 tolerated(0.1) possibly_damaging(0.801) TCGA-EE-A2MN-06 22 22453352 22453352 C T IGLV8-61 Missense_Mutation p.S33L 0.26 deleterious(0) benign(0.184) TCGA-EE-A2MN-06 22 26829983 26829983 C T ASPHD2 Silent p.A134A 0.27 TCGA-EE-A2MN-06 22 32626959 32626959 G A SLC5A4 Silent p.P375P 0.12 TCGA-EE-A2MN-06 2 113941069 113941069 C T PSD4 Missense_Mutation p.P346S 0.30 tolerated_low_confidence(0.25) benign(0.021) TCGA-EE-A2MN-06 2 120003519 120003519 C T STEAP3 Silent p.I159I 0.33 TCGA-EE-A2MN-06 2 127950834 127950834 C T CYP27C1 Missense_Mutation p.D280N 0.33 deleterious(0.02) possibly_damaging(0.572) TCGA-EE-A2MN-06 2 137814542 137814542 C T THSD7B Missense_Mutation p.S231F 0.30 deleterious(0.05) probably_damaging(0.965) TCGA-EE-A2MN-06 2 152510568 152510568 C T NEB Missense_Mutation p.D2285N 0.28 benign(0.273) TCGA-EE-A2MN-06 2 159497153 159497153 G A PKP4 Missense_Mutation p.R526H 0.37 deleterious(0.04) benign(0.273) TCGA-EE-A2MN-06 2 160287589 160287589 T C BAZ2B Missense_Mutation p.D660G 0.36 possibly_damaging(0.539) TCGA-EE-A2MN-06 2 179485350 179485350 C T TTN Missense_Mutation p.E15300K 0.55 TCGA-EE-A2MN-06 2 179500199 179500199 C T TTN Missense_Mutation p.G13951E 0.20 TCGA-EE-A2MN-06 2 196640651 196640651 G A DNAH7 Silent p.I3707I 0.31 TCGA-EE-A2MN-06 2 208994531 208994531 G A CRYGC 5'UTR 0.45 TCGA-EE-A2MN-06 2 211068111 211068111 T C ACADL Missense_Mutation p.T310A 0.35 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MN-06 2 212288939 212288939 C T ERBB4 Missense_Mutation p.G936E 0.25 deleterious(0.02) possibly_damaging(0.606) TCGA-EE-A2MN-06 2 220355284 220355284 G A SPEG Silent p.L3025L 0.09 TCGA-EE-A2MN-06 2 235949971 235949971 C T SH3BP4 Silent p.P186P 0.29 TCGA-EE-A2MN-06 2 241078560 241078560 G A OTOS 3'UTR 0.24 TCGA-EE-A2MN-06 2 27717446 27717446 A G FNDC4 Missense_Mutation p.L34P 0.31 deleterious(0) possibly_damaging(0.902) TCGA-EE-A2MN-06 2 27800346 27800346 G A C2orf16 Missense_Mutation p.G303R 0.39 tolerated(0.12) benign(0.001) TCGA-EE-A2MN-06 2 27800347 27800347 G A C2orf16 Missense_Mutation p.G303E 0.38 tolerated(0.34) benign(0.001) TCGA-EE-A2MN-06 3 113004374 113004374 C T BOC Missense_Mutation p.P1040L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.77) TCGA-EE-A2MN-06 3 121659737 121659737 C T SLC15A2 Silent p.I691I 0.37 TCGA-EE-A2MN-06 3 14744697 14744697 C T C3orf20 Missense_Mutation p.P269L 0.33 deleterious(0.03) benign(0.234) TCGA-EE-A2MN-06 3 38889195 38889195 G A SCN11A Missense_Mutation p.P1456S 0.33 tolerated(0.43) benign(0.125) TCGA-EE-A2MN-06 3 47098526 47098526 G A SETD2 Nonsense_Mutation p.Q2250* 0.45 TCGA-EE-A2MN-06 3 48461264 48461264 G A PLXNB1 Missense_Mutation p.H811Y 0.58 tolerated(1) benign(0.001) TCGA-EE-A2MN-06 3 48630291 48630291 C T COL7A1 Missense_Mutation p.A255T 0.30 unknown(0) TCGA-EE-A2MN-06 3 66434512 66434512 G A LRIG1 Silent p.F658F 0.33 TCGA-EE-A2MN-06 3 89480458 89480458 C T EPHA3 Silent p.F765F 0.32 TCGA-EE-A2MN-06 3 97983134 97983134 C T OR5H6 Silent p.F2F 0.38 TCGA-EE-A2MN-06 4 102981499 102981499 T A BANK1 Missense_Mutation p.F701I 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MN-06 4 129965184 129965184 C T SCLT1 Missense_Mutation p.G42E 0.38 tolerated(0.52) benign(0.082) TCGA-EE-A2MN-06 4 129965185 129965185 C T SCLT1 Missense_Mutation p.G42R 0.38 tolerated(0.34) benign(0.128) TCGA-EE-A2MN-06 4 140278564 140278564 C G NAA15 Missense_Mutation p.T371S 0.33 tolerated(0.54) probably_damaging(0.996) TCGA-EE-A2MN-06 4 153896869 153896869 C T FHDC1 Missense_Mutation p.S809F 0.40 deleterious(0) benign(0.231) TCGA-EE-A2MN-06 4 155157701 155157701 G A DCHS2 Silent p.I2246I 0.29 TCGA-EE-A2MN-06 4 167656197 167656197 G A SPOCK3 Missense_Mutation p.H396Y 0.33 tolerated_low_confidence(0.98) possibly_damaging(0.493) TCGA-EE-A2MN-06 4 189068016 189068016 C T TRIML1 Silent p.L299L 0.36 TCGA-EE-A2MN-06 4 20544138 20544138 C T SLIT2 Missense_Mutation p.S722F 0.37 tolerated(0.37) probably_damaging(0.996) TCGA-EE-A2MN-06 4 69433515 69433515 G A UGT2B17 Silent p.L230L 0.41 TCGA-EE-A2MN-06 4 69817061 69817061 C T UGT2A3 Missense_Mutation p.E140K 0.29 tolerated(0.24) benign(0.019) TCGA-EE-A2MN-06 4 7780554 7780554 C T AFAP1 Missense_Mutation p.G611E 0.39 deleterious(0.03) benign(0.066) TCGA-EE-A2MN-06 4 94436462 94436462 C T GRID2 Missense_Mutation p.P698L 0.28 deleterious(0) possibly_damaging(0.677) TCGA-EE-A2MN-06 4 9557806 9557806 G A MIR548I2 RNA 0.31 TCGA-EE-A2MN-06 5 100147735 100147735 C T ST8SIA4 Missense_Mutation p.G299E 0.40 probably_damaging(1) TCGA-EE-A2MN-06 5 120022371 120022371 G A PRR16 Silent p.T271T 0.39 TCGA-EE-A2MN-06 5 132270456 132270456 C T AFF4 Missense_Mutation p.G101S 0.36 tolerated(0.98) benign(0.003) TCGA-EE-A2MN-06 5 134782686 134782686 G A C5orf20 Missense_Mutation p.P38L 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-EE-A2MN-06 5 134907542 134907542 C T CXCL14 3'UTR 0.33 TCGA-EE-A2MN-06 5 134907551 134907551 C T CXCL14 Missense_Mutation p.E110K 0.32 deleterious_low_confidence(0) benign(0.305) TCGA-EE-A2MN-06 5 13759068 13759068 G A DNAH5 Missense_Mutation p.R3436C 0.31 possibly_damaging(0.898) TCGA-EE-A2MN-06 5 140216153 140216153 G A PCDHA7 Missense_Mutation p.E729K 0.36 deleterious_low_confidence(0.03) benign(0.025) TCGA-EE-A2MN-06 5 140222821 140222821 G A PCDHA8 Missense_Mutation p.E639K 0.31 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-EE-A2MN-06 5 140229694 140229694 C T PCDHA9 Silent p.R538R 0.29 TCGA-EE-A2MN-06 5 140432366 140432366 G A PCDHB1 Missense_Mutation p.M437I 0.46 tolerated(0.25) benign(0.001) TCGA-EE-A2MN-06 5 140503831 140503831 G A PCDHB4 Missense_Mutation p.E751K 0.38 deleterious_low_confidence(0.02) benign(0.052) TCGA-EE-A2MN-06 5 145435568 145435568 C T SH3RF2 Silent p.S449S 0.40 TCGA-EE-A2MN-06 5 162917552 162917552 A G HMMR Missense_Mutation p.K707E 0.43 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2MN-06 5 64466483 64466483 C T ADAMTS6 Missense_Mutation p.E1069K 0.31 tolerated(0.14) benign(0.032) TCGA-EE-A2MN-06 5 66449399 66449399 C T MAST4 Silent p.L1213L 0.40 TCGA-EE-A2MN-06 5 71622508 71622508 C T PTCD2 Missense_Mutation p.T97I 0.33 tolerated(0.13) benign(0.037) TCGA-EE-A2MN-06 5 94764394 94764394 C T FAM81B Silent p.F248F 0.34 TCGA-EE-A2MN-06 6 24454254 24454254 C T GPLD1 Missense_Mutation p.E442K 0.28 deleterious(0.03) benign(0.092) TCGA-EE-A2MN-06 6 29408527 29408527 C T OR10C1 Silent p.I245I 0.35 TCGA-EE-A2MN-06 6 31556496 31556496 C T LST1 3'UTR 0.20 TCGA-EE-A2MN-06 6 38565687 38565687 G A BTBD9 Nonsense_Mutation p.R62* 0.25 TCGA-EE-A2MN-06 6 41051789 41051789 A T NFYA Missense_Mutation p.Q56L 0.59 deleterious(0.03) unknown(0) TCGA-EE-A2MN-06 6 43227376 43227376 G A TTBK1 Silent p.R452R 0.42 TCGA-EE-A2MN-06 6 44198607 44198608 - T SLC29A1 Frame_Shift_Ins p.L250Ffs*5 0.18 TCGA-EE-A2MN-06 6 46979926 46979926 G A GPR110 Silent p.F311F 0.45 TCGA-EE-A2MN-06 6 49696475 49696475 C T CRISP3 Missense_Mutation p.A259T 0.34 deleterious(0.01) possibly_damaging(0.709) TCGA-EE-A2MN-06 6 70856749 70856749 G A COL19A1 Missense_Mutation p.G621S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MN-06 6 76558070 76558070 C T MYO6 Silent p.Y300Y 0.41 TCGA-EE-A2MN-06 7 100243896 100243896 G A ACTL6B Silent p.I392I 0.20 TCGA-EE-A2MN-06 7 112130130 112130130 C T LSMEM1 3'UTR 0.46 TCGA-EE-A2MN-06 7 141490773 141490773 C T TAS2R5 Silent p.V204V 0.34 TCGA-EE-A2MN-06 7 142198029 142198029 G A TRBV11-2 RNA 0.28 TCGA-EE-A2MN-06 7 19765299 19765299 G A TMEM196 Silent p.S99S 0.16 TCGA-EE-A2MN-06 7 24738856 24738856 C T DFNA5 Missense_Mutation p.G427E 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MN-06 7 45662343 45662343 G A ADCY1 Splice_Site p.X340_splice 0.28 TCGA-EE-A2MN-06 7 51097022 51097022 C T COBL Missense_Mutation p.E591K 0.22 tolerated(0.64) benign(0.016) TCGA-EE-A2MN-06 7 77408174 77408174 C T RSBN1L Missense_Mutation p.H744Y 0.53 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A2MN-06 8 10466270 10466270 C T RP1L1 Missense_Mutation p.E1780K 0.55 unknown(0) TCGA-EE-A2MN-06 8 110455982 110455982 A G PKHD1L1 Missense_Mutation p.T1548A 0.17 tolerated(0.12) benign(0.002) TCGA-EE-A2MN-06 8 57079566 57079566 G A PLAG1 Missense_Mutation p.P247S 0.27 tolerated(0.21) probably_damaging(0.968) TCGA-EE-A2MN-06 8 88297023 88297023 G A CNBD1 Missense_Mutation p.G297R 0.47 deleterious(0.05) benign(0.059) TCGA-EE-A2MN-06 9 104187160 104187160 C A ALDOB Nonsense_Mutation p.E322* 0.43 TCGA-EE-A2MN-06 9 107289113 107289113 G A OR13C4 Silent p.I126I 0.38 TCGA-EE-A2MN-06 9 112694226 112694226 C T PALM2-AKAP2 Silent p.S138S 0.43 TCGA-EE-A2MN-06 9 113637908 113637908 G A LPAR1 Silent p.F296F 0.38 TCGA-EE-A2MN-06 9 138714454 138714454 G A CAMSAP1 Missense_Mutation p.L685F 0.21 tolerated(0.25) benign(0.042) TCGA-EE-A2MN-06 9 138714455 138714455 G A CAMSAP1 Silent p.A684A 0.21 TCGA-EE-A2MN-06 9 139571920 139571920 G A AGPAT2 Missense_Mutation p.P91S 0.36 deleterious(0.02) possibly_damaging(0.654) TCGA-EE-A2MN-06 9 140357203 140357203 A T PNPLA7 Nonsense_Mutation p.Y1142* 0.53 TCGA-EE-A2MN-06 9 23705064 23705064 G A ELAVL2 Silent p.S113S 0.62 TCGA-EE-A2MN-06 9 43627520 43627520 C T SPATA31A6 Silent p.S389S 0.33 TCGA-EE-A2MN-06 9 78601118 78601118 C G PCSK5 Missense_Mutation p.S123C 0.44 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2MN-06 9 95256409 95256409 C T ECM2 3'Flank 0.33 TCGA-EE-A2MN-06 9 96080423 96080423 C T WNK2 3'UTR 0.27 TCGA-EE-A2MN-06 X 100808469 100808469 C T ARMCX1 Missense_Mutation p.P186S 0.85 tolerated(0.08) benign(0.197) TCGA-EE-A2MN-06 X 117526592 117526592 C T WDR44 Intron 0.58 TCGA-EE-A2MN-06 X 153908421 153908421 G A GAB3 Silent p.A545A 0.76 TCGA-EE-A2MN-06 X 23411489 23411489 G A PTCHD1 Silent p.L618L 0.70 TCGA-EE-A2MN-06 X 26212086 26212086 C T MAGEB6 Silent p.S41S 0.92 TCGA-EE-A2MP-06 10 134912195 134912195 C T GPR123 Silent p.F61F 0.76 TCGA-EE-A2MP-06 10 21076194 21076194 G A NEBL Silent p.G935G 0.32 TCGA-EE-A2MP-06 10 30315364 30315364 T C KIAA1462 Missense_Mutation p.K1238R 0.42 tolerated(0.16) benign(0.255) TCGA-EE-A2MP-06 10 31810698 31810698 C T ZEB1 Missense_Mutation p.P813L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 10 48390817 48390817 G A RBP3 Missense_Mutation p.H21Y 0.39 deleterious(0.04) benign(0.152) TCGA-EE-A2MP-06 10 52103615 52103615 A T SGMS1 Missense_Mutation p.I87N 0.45 tolerated(0.38) benign(0.001) TCGA-EE-A2MP-06 10 60154712 60154712 G A TFAM Missense_Mutation p.D207N 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 11 1097738 1097738 G A MUC2 Silent p.E2277E 0.40 TCGA-EE-A2MP-06 11 113673923 113673924 - C USP28 Frame_Shift_Ins p.V940Gfs*26 0.25 TCGA-EE-A2MP-06 11 18762237 18762239 CTC TT PTPN5 Frame_Shift_Del p.E276Nfs*34 0.33 TCGA-EE-A2MP-06 11 18955459 18955459 G A MRGPRX1 Silent p.L291L 0.21 TCGA-EE-A2MP-06 11 3249685 3249685 C T MRGPRE Silent p.A114A 0.22 TCGA-EE-A2MP-06 11 4153577 4153577 C T RRM1 Silent p.L611L 0.20 TCGA-EE-A2MP-06 11 4674041 4674041 C T OR51E1 Silent p.I95I 0.12 TCGA-EE-A2MP-06 11 55322530 55322530 C T OR4C15 Missense_Mutation p.L250F 0.55 tolerated_low_confidence(0.06) benign(0.033) TCGA-EE-A2MP-06 11 55371330 55371330 G A OR4C11 Missense_Mutation p.H174Y 0.53 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MP-06 11 55433349 55433349 C T OR4C6 Missense_Mutation p.S236F 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2MP-06 11 55587908 55587908 C T OR5D18 Missense_Mutation p.S268F 0.40 deleterious(0) probably_damaging(0.966) TCGA-EE-A2MP-06 11 55944548 55944548 G A OR5J2 Missense_Mutation p.G152E 0.56 deleterious(0.01) probably_damaging(0.94) TCGA-EE-A2MP-06 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.18 deleterious(0.02) benign(0.181) TCGA-EE-A2MP-06 11 56044034 56044034 A T OR5T1 Missense_Mutation p.K307I 0.41 deleterious(0) probably_damaging(0.914) TCGA-EE-A2MP-06 11 56310479 56310479 G A OR5M11 Silent p.I85I 0.44 TCGA-EE-A2MP-06 11 59860950 59860950 G A MS4A2 Silent p.L152L 0.46 TCGA-EE-A2MP-06 11 62751836 62751836 C T SLC22A6 Nonsense_Mutation p.W109* 0.24 TCGA-EE-A2MP-06 11 64137784 64137784 C T RPS6KA4 Missense_Mutation p.R629C 0.21 tolerated(0.06) benign(0.081) TCGA-EE-A2MP-06 11 64527442 64527442 G A PYGM 5'UTR 0.32 TCGA-EE-A2MP-06 11 65272211 65272211 A G MALAT1 RNA 0.24 TCGA-EE-A2MP-06 11 6541243 6541243 C T DNHD1 Missense_Mutation p.H566Y 0.26 benign(0.002) TCGA-EE-A2MP-06 11 66191325 66191325 C T NPAS4 Missense_Mutation p.L322F 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2MP-06 11 6953513 6953513 C A ZNF215 Missense_Mutation p.L4M 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MP-06 11 76174919 76174919 C T C11orf30 Missense_Mutation p.S209F 0.49 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2MP-06 11 7961032 7961032 G A OR10A3 Silent p.F12F 0.14 TCGA-EE-A2MP-06 11 85576199 85576199 T C CCDC83 Silent p.D11D 0.24 TCGA-EE-A2MP-06 11 8942870 8942870 G A C11orf16 Missense_Mutation p.S466F 0.49 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-EE-A2MP-06 11 89431799 89431799 G A FOLH1B RNA 0.29 TCGA-EE-A2MP-06 11 92085755 92085755 A C FAT3 Silent p.S159S 0.41 TCGA-EE-A2MP-06 12 1034684 1034684 C T RAD52 Missense_Mutation p.G159R 0.51 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MP-06 12 108013885 108013885 G A BTBD11 Missense_Mutation p.E859K 0.44 tolerated(0.07) possibly_damaging(0.629) TCGA-EE-A2MP-06 12 113759054 113759054 C T SLC8B1 Missense_Mutation p.G86S 0.21 tolerated(0.05) possibly_damaging(0.806) TCGA-EE-A2MP-06 12 117603355 117603355 C G FBXO21 Missense_Mutation p.D421H 0.34 deleterious(0.01) benign(0.199) TCGA-EE-A2MP-06 12 121088385 121088385 C T CABP1 Intron 0.50 TCGA-EE-A2MP-06 12 125438543 125438543 C T DHX37 Splice_Site p.X860_splice 0.53 TCGA-EE-A2MP-06 12 14976118 14976118 G A C12orf60 Silent p.K83K 0.24 TCGA-EE-A2MP-06 12 23818467 23818467 G A SOX5 Missense_Mutation p.P281L 0.45 deleterious(0.02) benign(0.022) TCGA-EE-A2MP-06 12 25679043 25679043 G C IFLTD1 Missense_Mutation p.P263R 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 12 50471139 50471139 G A ASIC1 Silent p.G234G 0.40 TCGA-EE-A2MP-06 12 50860821 50860821 C T LARP4 Missense_Mutation p.P488L 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 12 55356694 55356694 G A TESPA1 Missense_Mutation p.L330F 0.18 tolerated(0.12) benign(0.258) TCGA-EE-A2MP-06 12 6231893 6231893 C T VWF Intron 0.47 TCGA-EE-A2MP-06 12 7890135 7890135 G A CLEC4C Nonsense_Mutation p.Q91* 0.44 TCGA-EE-A2MP-06 13 114107564 114107564 G T ADPRHL1 Silent p.I63I 0.27 TCGA-EE-A2MP-06 13 21296055 21296055 C T IL17D Missense_Mutation p.L191F 0.38 tolerated(0.09) benign(0.312) TCGA-EE-A2MP-06 13 28588639 28588639 G A FLT3 Missense_Mutation p.P937S 0.29 tolerated(1) benign(0.005) TCGA-EE-A2MP-06 13 28588640 28588640 G A FLT3 Silent p.F936F 0.30 TCGA-EE-A2MP-06 13 29004199 29004199 G A FLT1 Missense_Mutation p.P365L 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 13 29004200 29004200 G A FLT1 Missense_Mutation p.P365S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 13 32906615 32906615 C T BRCA2 Missense_Mutation p.H334Y 0.31 tolerated(1) benign(0.005) TCGA-EE-A2MP-06 13 39263084 39263084 C T FREM2 Missense_Mutation p.R535C 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MP-06 13 46542938 46542938 T C ZC3H13 Silent p.R1247R 0.34 TCGA-EE-A2MP-06 13 98645159 98645159 C T IPO5 Missense_Mutation p.S246L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MP-06 14 106805642 106805642 C T IGHV4-31 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-EE-A2MP-06 14 20020125 20020125 G A POTEM Silent p.F32F 0.17 TCGA-EE-A2MP-06 14 20404452 20404452 C T OR4K1 Silent p.S209S 0.23 TCGA-EE-A2MP-06 14 22434132 22434132 C T TRAV12-3 Missense_Mutation p.S62F 0.46 deleterious(0.01) benign(0.082) TCGA-EE-A2MP-06 14 36943040 36943040 C T SFTA3 3'UTR 0.24 TCGA-EE-A2MP-06 14 52496283 52496283 C T NID2 Missense_Mutation p.D795N 0.33 deleterious(0.03) benign(0.303) TCGA-EE-A2MP-06 14 63784404 63784407 CGAA AGAAG GPHB5 RNA 0.11 TCGA-EE-A2MP-06 14 71570253 71570253 C T PCNX Missense_Mutation p.P1988S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 14 90651153 90651153 G A KCNK13 Missense_Mutation p.E345K 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MP-06 15 33955132 33955132 G A RYR3 Missense_Mutation p.E1801K 0.36 probably_damaging(0.986) TCGA-EE-A2MP-06 15 38234396 38234396 A G TMCO5A Missense_Mutation p.Y170C 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MP-06 15 40675118 40675118 C T KNSTRN Missense_Mutation p.P28S 0.43 tolerated_low_confidence(0.09) benign(0.031) TCGA-EE-A2MP-06 15 42104844 42104844 C T MAPKBP1 Missense_Mutation p.T210I 0.30 deleterious(0.04) benign(0.269) TCGA-EE-A2MP-06 15 44068348 44068348 T A ELL3 Missense_Mutation p.Y57F 0.30 deleterious(0.01) possibly_damaging(0.847) TCGA-EE-A2MP-06 15 69223007 69223007 C T SPESP1 Silent p.V5V 0.36 TCGA-EE-A2MP-06 15 69223008 69223008 C T SPESP1 Missense_Mutation p.L6F 0.37 deleterious(0.04) benign(0.128) TCGA-EE-A2MP-06 15 71403676 71403676 C T CT62 Silent p.K75K 0.27 TCGA-EE-A2MP-06 15 72208774 72208774 A G MYO9A Silent p.I874I 0.24 TCGA-EE-A2MP-06 15 74623062 74623062 G A CCDC33 Silent p.R505R 0.20 TCGA-EE-A2MP-06 15 77759465 77759465 A G HMG20A Missense_Mutation p.K89R 0.10 deleterious(0.04) probably_damaging(0.985) TCGA-EE-A2MP-06 15 78893932 78893932 G A CHRNA3 Missense_Mutation p.P351L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 15 85401094 85401094 G A ALPK3 Missense_Mutation p.G1244D 0.26 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MP-06 16 20548540 20548540 G A ACSM2B 3'UTR 0.29 TCGA-EE-A2MP-06 16 27238131 27238131 G A NSMCE1 Silent p.G170G 0.40 TCGA-EE-A2MP-06 16 49669774 49669774 C T ZNF423 Missense_Mutation p.A1097T 0.55 tolerated(0.64) benign(0) TCGA-EE-A2MP-06 16 50744798 50744798 C T NOD2 Missense_Mutation p.L326F 0.31 tolerated(0.21) benign(0.262) TCGA-EE-A2MP-06 16 61687849 61687849 G A CDH8 Missense_Mutation p.P688L 0.45 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A2MP-06 16 66770095 66770095 G A DYNC1LI2 Silent p.S194S 0.30 TCGA-EE-A2MP-06 16 66770096 66770096 G A DYNC1LI2 Missense_Mutation p.S194F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 16 66942215 66942215 G C CDH16 3'UTR 0.16 TCGA-EE-A2MP-06 16 83711854 83711854 C T CDH13 Silent p.I489I 0.44 TCGA-EE-A2MP-06 16 84230550 84230550 G A ADAD2 Silent p.S656S 0.50 TCGA-EE-A2MP-06 16 85105471 85105471 C T KIAA0513 Nonsense_Mutation p.R138* 0.35 TCGA-EE-A2MP-06 17 10430031 10430031 C T MYH2 Missense_Mutation p.E1358K 0.56 deleterious(0.01) benign(0.169) TCGA-EE-A2MP-06 17 11650910 11650910 C T DNAH9 Missense_Mutation p.S2146F 0.39 probably_damaging(0.954) TCGA-EE-A2MP-06 17 16455883 16455885 GAA - ZNF287 In_Frame_Del p.L524del 0.21 TCGA-EE-A2MP-06 17 2966002 2966002 C A OR1D5 Silent p.P300P 0.43 TCGA-EE-A2MP-06 17 37898848 37898848 C T GRB7 Missense_Mutation p.T85I 0.22 deleterious(0.03) benign(0.117) TCGA-EE-A2MP-06 17 39471786 39471786 C T KRTAP17-1 Silent p.G39G 0.27 TCGA-EE-A2MP-06 17 39680045 39680045 C T KRT19 Missense_Mutation p.E385K 0.19 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MP-06 17 45360877 45360877 A G ITGB3 Missense_Mutation p.Q108R 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 17 48614370 48614370 G A EPN3 Silent p.K151K 0.67 TCGA-EE-A2MP-06 17 53797994 53797994 C T TMEM100 3'UTR 0.43 TCGA-EE-A2MP-06 17 65362640 65362640 C T PSMD12 5'UTR 0.80 TCGA-EE-A2MP-06 17 65732798 65732798 C T NOL11 Silent p.S357S 0.15 TCGA-EE-A2MP-06 17 75190974 75190974 C T SEC14L1 Silent p.P230P 0.43 TCGA-EE-A2MP-06 17 7678115 7678115 G A DNAH2 Missense_Mutation p.E1514K 0.26 probably_damaging(0.996) TCGA-EE-A2MP-06 17 7708669 7708669 C T DNAH2 Nonsense_Mutation p.R3134* 0.19 TCGA-EE-A2MP-06 18 3116406 3116406 C T MYOM1 Missense_Mutation p.D1076N 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MP-06 18 44561664 44561664 C T TCEB3B 5'UTR 0.43 TCGA-EE-A2MP-06 18 44627439 44627439 C T KATNAL2 3'UTR 0.45 TCGA-EE-A2MP-06 18 50278518 50278518 C T DCC Silent p.S62S 0.52 TCGA-EE-A2MP-06 18 56024451 56024451 C T NEDD4L Silent p.D578D 0.52 TCGA-EE-A2MP-06 18 56024452 56024452 C T NEDD4L Missense_Mutation p.P579S 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 18 66564501 66564501 G A CCDC102B Missense_Mutation p.E367K 0.14 tolerated(0.05) possibly_damaging(0.839) TCGA-EE-A2MP-06 18 74963119 74963119 C T GALR1 Silent p.F205F 0.12 TCGA-EE-A2MP-06 19 11892313 11892313 C T ZNF441 Silent p.P558P 0.43 TCGA-EE-A2MP-06 19 14640438 14640439 - G TECR 5'UTR 0.30 TCGA-EE-A2MP-06 19 15990464 15990464 T C CYP4F2 Missense_Mutation p.I422V 0.41 tolerated(0.4) benign(0.015) TCGA-EE-A2MP-06 19 16178515 16178515 G A TPM4 Silent p.A27A 0.19 TCGA-EE-A2MP-06 19 18545624 18545624 G A ISYNA1 3'UTR 0.40 TCGA-EE-A2MP-06 19 19338385 19338385 C T NCAN Silent p.T652T 0.23 TCGA-EE-A2MP-06 19 21909497 21909497 G A ZNF100 Silent p.T539T 0.43 TCGA-EE-A2MP-06 19 37314681 37314681 G A ZNF790 Silent p.F7F 0.31 TCGA-EE-A2MP-06 19 42270134 42270134 G A CEACAM6 Silent p.T334T 0.19 TCGA-EE-A2MP-06 19 47228159 47228159 C T STRN4 Missense_Mutation p.G507D 0.14 tolerated(0.28) probably_damaging(0.998) TCGA-EE-A2MP-06 19 51875054 51875054 G A NKG7 Missense_Mutation p.R159C 0.19 deleterious(0) benign(0.265) TCGA-EE-A2MP-06 19 51875055 51875055 G A NKG7 Silent p.P158P 0.18 TCGA-EE-A2MP-06 19 53418497 53418497 G A ZNF888 RNA 0.26 TCGA-EE-A2MP-06 19 54200822 54200822 C T MIR525 RNA 0.37 TCGA-EE-A2MP-06 19 54251937 54251937 G A MIR521-1 RNA 0.22 TCGA-EE-A2MP-06 19 55106777 55106777 C T LILRA1 Missense_Mutation p.R191C 0.25 deleterious(0.03) benign(0.063) TCGA-EE-A2MP-06 19 55378096 55378096 C T KIR3DL2 Silent p.S426S 0.44 TCGA-EE-A2MP-06 19 55452999 55452999 G A NLRP7 Silent p.S27S 0.29 TCGA-EE-A2MP-06 19 57328195 57328195 C T PEG3 Missense_Mutation p.E539K 0.21 deleterious(0.02) benign(0.184) TCGA-EE-A2MP-06 19 57666694 57666694 C T DUXA Missense_Mutation p.R162K 0.12 tolerated(0.41) benign(0.006) TCGA-EE-A2MP-06 19 57869030 57869030 G A ZNF304 Missense_Mutation p.R598H 0.08 tolerated(0.29) probably_damaging(1) TCGA-EE-A2MP-06 19 9060576 9060576 G A MUC16 Missense_Mutation p.P8957L 0.49 unknown(0) TCGA-EE-A2MP-06 1 100155218 100155218 C T PALMD Missense_Mutation p.P468S 0.46 tolerated(0.5) benign(0.246) TCGA-EE-A2MP-06 1 100546081 100546081 C T HIAT1 Nonsense_Mutation p.R378* 0.33 TCGA-EE-A2MP-06 1 101200182 101200182 G T VCAM1 Silent p.A639A 0.35 TCGA-EE-A2MP-06 1 101200183 101200183 G A VCAM1 Missense_Mutation p.E640K 0.35 tolerated(0.47) benign(0.068) TCGA-EE-A2MP-06 1 111660801 111660801 A G DRAM2 Missense_Mutation p.L261P 0.32 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2MP-06 1 115576094 115576094 T C TSHB Silent p.A37A 0.50 TCGA-EE-A2MP-06 1 117303207 117303207 G A CD2 Missense_Mutation p.G189E 0.29 tolerated(0.5) benign(0.025) TCGA-EE-A2MP-06 1 1289861 1289861 G A MXRA8 Silent p.V326V 0.33 TCGA-EE-A2MP-06 1 12979749 12979749 G T PRAMEF7 Missense_Mutation p.W314L 0.11 benign(0.048) TCGA-EE-A2MP-06 1 13912088 13912088 G A PDPN Intron 0.34 TCGA-EE-A2MP-06 1 150235484 150235484 C T CA14 Silent p.L202L 0.37 TCGA-EE-A2MP-06 1 151020995 151020995 G A C1orf56 Silent p.G224G 0.29 TCGA-EE-A2MP-06 1 153177316 153177316 G A LELP1 Missense_Mutation p.E45K 0.29 deleterious_low_confidence(0.01) benign(0.192) TCGA-EE-A2MP-06 1 153591502 153591502 G A S100A13 Missense_Mutation p.L56F 0.33 tolerated(0.05) probably_damaging(0.973) TCGA-EE-A2MP-06 1 157512838 157512838 C T FCRL5 Missense_Mutation p.E312K 0.44 tolerated(0.93) benign(0.012) TCGA-EE-A2MP-06 1 158735715 158735715 C T OR6N1 Missense_Mutation p.G253E 0.21 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MP-06 1 161989927 161989927 C T OLFML2B Missense_Mutation p.D74N 0.26 tolerated(0.13) benign(0.102) TCGA-EE-A2MP-06 1 162381866 162381866 G A SH2D1B 5'UTR 0.12 TCGA-EE-A2MP-06 1 16257957 16257957 C T SPEN Missense_Mutation p.S1741L 0.11 benign(0.004) TCGA-EE-A2MP-06 1 180240826 180240826 G A LHX4 Intron 0.57 TCGA-EE-A2MP-06 1 190068027 190068027 G T BRINP3 Nonsense_Mutation p.C474* 0.14 TCGA-EE-A2MP-06 1 197407692 197407692 C T CRB1 Silent p.P1255P 0.20 TCGA-EE-A2MP-06 1 215792594 215792594 C T KCTD3 Missense_Mutation p.S616F 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MP-06 1 227153415 227153431 TTGGCCGGCTGGCCAAC - ADCK3 Frame_Shift_Del p.G212Rfs*69 0.38 TCGA-EE-A2MP-06 1 228113089 228113089 G A WNT9A Missense_Mutation p.P76L 0.55 deleterious(0.03) probably_damaging(0.924) TCGA-EE-A2MP-06 1 235622058 235622058 G A B3GALNT2 Missense_Mutation p.P293L 0.40 deleterious(0.02) benign(0.387) TCGA-EE-A2MP-06 1 247978878 247978878 G A OR14A16 Missense_Mutation p.H52Y 0.37 tolerated(0.11) benign(0.374) TCGA-EE-A2MP-06 1 248436229 248436229 C T OR2T33 Silent p.K296K 0.38 TCGA-EE-A2MP-06 1 26691377 26691377 G A ZNF683 Silent p.L220L 0.46 TCGA-EE-A2MP-06 1 26769251 26769251 C T DHDDS Silent p.I70I 0.43 TCGA-EE-A2MP-06 1 26769252 26769252 C T DHDDS Silent p.L71L 0.43 TCGA-EE-A2MP-06 1 31501645 31501645 C T PUM1 Missense_Mutation p.E144K 0.29 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MP-06 1 38168923 38168923 G A CDCA8 Splice_Site p.X163_splice 0.50 TCGA-EE-A2MP-06 1 46180064 46180064 A G IPP Missense_Mutation p.S462P 0.25 deleterious(0.03) possibly_damaging(0.653) TCGA-EE-A2MP-06 1 47610246 47610246 G A CYP4A22 Missense_Mutation p.D308N 0.29 deleterious(0.04) possibly_damaging(0.651) TCGA-EE-A2MP-06 1 47717418 47717418 G A STIL Missense_Mutation p.S1086L 0.35 deleterious(0) possibly_damaging(0.815) TCGA-EE-A2MP-06 1 52924079 52924079 A G ZCCHC11 Missense_Mutation p.Y1122H 0.39 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MP-06 1 53995556 53995556 C T GLIS1 Missense_Mutation p.E289K 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MP-06 1 70226011 70226011 T A LRRC7 Missense_Mutation p.F42I 0.23 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MP-06 1 87045258 87045258 G A CLCA4 Missense_Mutation p.D782N 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MP-06 20 1424412 1424412 G A NSFL1C Silent p.I367I 0.38 TCGA-EE-A2MP-06 20 14307575 14307575 G A FLRT3 Missense_Mutation p.P193L 0.58 tolerated(0.63) benign(0.002) TCGA-EE-A2MP-06 20 18506573 18506573 G A SEC23B Silent p.L277L 0.33 TCGA-EE-A2MP-06 20 25656980 25656980 G A ZNF337 Missense_Mutation p.S315L 0.28 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2MP-06 20 29960671 29960671 G A DEFB118 Missense_Mutation p.E24K 0.56 tolerated(0.47) possibly_damaging(0.636) TCGA-EE-A2MP-06 20 31600712 31600712 C T BPIFB2 Missense_Mutation p.R103C 0.14 tolerated(0.1) benign(0.027) TCGA-EE-A2MP-06 20 56227601 56227601 G A PMEPA1 Silent p.F124F 0.43 TCGA-EE-A2MP-06 20 61987406 61987406 G A CHRNA4 Missense_Mutation p.P102S 0.12 deleterious(0.01) benign(0.057) TCGA-EE-A2MP-06 21 10933870 10933870 G A TPTE Missense_Mutation p.H337Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 21 37623502 37623502 G A DOPEY2 Missense_Mutation p.A1681T 0.18 tolerated(0.52) benign(0.009) TCGA-EE-A2MP-06 21 37788667 37788667 G A CHAF1B 3'UTR 0.53 TCGA-EE-A2MP-06 21 43766545 43766545 C T TFF2 3'UTR 0.37 TCGA-EE-A2MP-06 22 20458667 20458667 C T RIMBP3 Missense_Mutation p.G879R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MP-06 22 20458668 20458668 C T RIMBP3 Silent p.E878E 0.25 TCGA-EE-A2MP-06 22 25334156 25334156 C T TMEM211 Silent p.R29R 0.32 TCGA-EE-A2MP-06 22 30952022 30952022 G A GAL3ST1 Missense_Mutation p.R64W 0.39 deleterious(0.02) benign(0.289) TCGA-EE-A2MP-06 22 31522677 31522677 G A INPP5J Missense_Mutation p.M120I 0.26 deleterious(0.01) possibly_damaging(0.622) TCGA-EE-A2MP-06 22 35463067 35463067 C T ISX 5'UTR 0.32 TCGA-EE-A2MP-06 22 37603295 37603295 C T SSTR3 Missense_Mutation p.G183E 0.43 tolerated(0.1) benign(0.081) TCGA-EE-A2MP-06 22 38245404 38245404 G A EIF3L 5'UTR 0.52 TCGA-EE-A2MP-06 22 46655878 46655878 C T PKDREJ Nonsense_Mutation p.W1114* 0.27 TCGA-EE-A2MP-06 22 46655879 46655879 C T PKDREJ Nonsense_Mutation p.W1114* 0.28 TCGA-EE-A2MP-06 22 50961485 50961485 C T NCAPH2 Nonsense_Mutation p.Q524* 0.29 TCGA-EE-A2MP-06 2 105915055 105915055 C G TGFBRAP1 Missense_Mutation p.E266Q 0.28 deleterious(0.05) possibly_damaging(0.642) TCGA-EE-A2MP-06 2 120369228 120369228 G A PCDP1 Splice_Site p.X408_splice 0.26 TCGA-EE-A2MP-06 2 128083323 128083323 G A MAP3K2 Missense_Mutation p.L220F 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2MP-06 2 128083324 128083324 T A MAP3K2 Silent p.S219S 0.26 TCGA-EE-A2MP-06 2 165986630 165986630 C T SCN3A Silent p.K914K 0.34 TCGA-EE-A2MP-06 2 166911222 166911222 C T SCN1A Silent p.R176R 0.18 TCGA-EE-A2MP-06 2 179587548 179587548 C T TTN Missense_Mutation p.D7360N 0.50 TCGA-EE-A2MP-06 2 179611474 179611474 C T TTN Intron 0.34 TCGA-EE-A2MP-06 2 18766242 18766242 G A NT5C1B Silent p.L147L 0.19 TCGA-EE-A2MP-06 2 191905853 191905853 C T STAT4 Missense_Mutation p.E425K 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MP-06 2 21260931 21260931 C T APOB Missense_Mutation p.E146K 0.44 benign(0.026) TCGA-EE-A2MP-06 2 219131697 219131697 G A AAMP Missense_Mutation p.S136F 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 2 219525825 219525825 G A BCS1L Missense_Mutation p.G39S 0.39 tolerated(0.31) benign(0.256) TCGA-EE-A2MP-06 2 220251417 220251417 G A DNPEP Silent p.I101I 0.23 TCGA-EE-A2MP-06 2 220309693 220309693 C T SPEG Missense_Mutation p.P209S 0.46 benign(0.034) TCGA-EE-A2MP-06 2 220366281 220366281 G A GMPPA Silent p.Q74Q 0.44 TCGA-EE-A2MP-06 2 220366282 220366282 G A GMPPA Missense_Mutation p.E75K 0.44 tolerated(0.21) possibly_damaging(0.744) TCGA-EE-A2MP-06 2 226516398 226516398 T G NYAP2 3'UTR 0.29 TCGA-EE-A2MP-06 2 228228518 228228518 C T TM4SF20 Silent p.L204L 0.37 TCGA-EE-A2MP-06 2 229890302 229890302 G A PID1 3'UTR 0.27 TCGA-EE-A2MP-06 2 241722494 241722494 G A KIF1A Silent p.T277T 0.19 TCGA-EE-A2MP-06 2 241722495 241722495 G A KIF1A Missense_Mutation p.T277I 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MP-06 2 27355501 27355501 G A PREB Missense_Mutation p.S241F 0.24 deleterious(0.01) benign(0.092) TCGA-EE-A2MP-06 2 33774770 33774770 G A RASGRP3 Silent p.Q498Q 0.35 TCGA-EE-A2MP-06 2 38301675 38301675 C T CYP1B1 Missense_Mutation p.G286E 0.21 tolerated(0.17) benign(0.169) TCGA-EE-A2MP-06 2 40366808 40366808 C T SLC8A1 Missense_Mutation p.D760N 0.40 tolerated(0.06) benign(0.126) TCGA-EE-A2MP-06 2 40656466 40656466 C T SLC8A1 Missense_Mutation p.D319N 0.37 tolerated(0.32) benign(0.025) TCGA-EE-A2MP-06 2 44570899 44570899 T C PREPL Missense_Mutation p.N201D 0.19 tolerated(0.14) benign(0.075) TCGA-EE-A2MP-06 2 50758484 50758484 G A NRXN1 Missense_Mutation p.S783F 0.21 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A2MP-06 2 53995093 53995093 T A CHAC2 Missense_Mutation p.Y24N 0.16 deleterious(0.01) benign(0.13) TCGA-EE-A2MP-06 2 74709731 74709731 G A CCDC142 Silent p.P78P 0.68 TCGA-EE-A2MP-06 3 124646549 124646552 AATG - MUC13 Frame_Shift_Del p.S113* 0.32 TCGA-EE-A2MP-06 3 140167423 140167423 C T CLSTN2 Missense_Mutation p.H284Y 0.36 deleterious(0.01) benign(0.066) TCGA-EE-A2MP-06 3 14862703 14862703 C T FGD5 Missense_Mutation p.R709W 0.37 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MP-06 3 156395701 156395701 T C TIPARP Missense_Mutation p.V72A 0.37 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-EE-A2MP-06 3 169540625 169540625 C T LRRIQ4 Missense_Mutation p.R306C 0.41 deleterious(0.03) possibly_damaging(0.528) TCGA-EE-A2MP-06 3 169557996 169557996 C G LRRC31 Missense_Mutation p.R478P 0.38 tolerated(0.28) benign(0.001) TCGA-EE-A2MP-06 3 172224494 172224494 T C TNFSF10 Missense_Mutation p.K212E 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MP-06 3 187449569 187449569 G A BCL6 Missense_Mutation p.A104V 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A2MP-06 3 188327358 188327358 G A LPP Missense_Mutation p.G280E 0.08 deleterious(0.03) benign(0.265) TCGA-EE-A2MP-06 3 21465456 21465456 C T ZNF385D Missense_Mutation p.G318E 0.14 tolerated(0.38) probably_damaging(0.994) TCGA-EE-A2MP-06 3 2924836 2924836 G C CNTN4 Missense_Mutation p.M220I 0.60 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A2MP-06 3 38763770 38763770 G A SCN10A Silent p.I1162I 0.37 TCGA-EE-A2MP-06 3 39118627 39118627 C T WDR48 Intron 0.34 TCGA-EE-A2MP-06 3 40571737 40571737 C T ZNF621 Silent p.H63H 0.24 TCGA-EE-A2MP-06 3 43602729 43602729 C T ANO10 Missense_Mutation p.E487K 0.41 tolerated(0.17) benign(0.158) TCGA-EE-A2MP-06 3 47038258 47038258 C T NBEAL2 Missense_Mutation p.P831S 0.26 tolerated(0.14) possibly_damaging(0.677) TCGA-EE-A2MP-06 3 48726087 48726087 G A IP6K2 Silent p.R300R 0.45 TCGA-EE-A2MP-06 3 50151482 50151483 - G RBM5 Frame_Shift_Ins p.R574Efs*14 0.12 TCGA-EE-A2MP-06 3 51696606 51696606 C T RAD54L2 Missense_Mutation p.R1192C 0.32 deleterious_low_confidence(0.05) benign(0.443) TCGA-EE-A2MP-06 3 52724988 52724988 C T GNL3 Missense_Mutation p.P228S 0.37 tolerated(0.55) benign(0.004) TCGA-EE-A2MP-06 3 52724989 52724989 C T GNL3 Missense_Mutation p.P228L 0.37 tolerated(0.74) benign(0.001) TCGA-EE-A2MP-06 3 54930841 54930841 G A CACNA2D3 Missense_Mutation p.R771Q 0.45 deleterious(0.01) benign(0.124) TCGA-EE-A2MP-06 3 57569729 57569729 T C ARF4 Missense_Mutation p.N52D 0.28 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-EE-A2MP-06 3 64085191 64085191 G A PRICKLE2 Nonsense_Mutation p.R691* 0.30 TCGA-EE-A2MP-06 3 66428290 66428290 C T SLC25A26 3'UTR 0.50 TCGA-EE-A2MP-06 3 93733335 93733335 T A STX19 Missense_Mutation p.Y260F 0.17 tolerated(0.1) possibly_damaging(0.489) TCGA-EE-A2MP-06 3 9743588 9743588 C T MTMR14 Silent p.A628A 0.27 TCGA-EE-A2MP-06 3 99569213 99569213 T C FILIP1L Missense_Mutation p.K436R 0.42 tolerated(0.36) benign(0.012) TCGA-EE-A2MP-06 4 13338177 13338177 C T HSP90AB2P RNA 0.29 TCGA-EE-A2MP-06 4 13338908 13338908 T G HSP90AB2P RNA 0.22 TCGA-EE-A2MP-06 4 154709489 154709489 C T SFRP2 Missense_Mutation p.E167K 0.45 tolerated(0.22) benign(0.214) TCGA-EE-A2MP-06 4 156784842 156784842 C T ASIC5 Silent p.K35K 0.21 TCGA-EE-A2MP-06 4 162841651 162841651 C T FSTL5 Missense_Mutation p.G105E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 4 40796465 40796465 G A NSUN7 Silent p.Q418Q 0.50 TCGA-EE-A2MP-06 4 42580365 42580365 A T ATP8A1 Missense_Mutation p.F347Y 0.42 tolerated(0.22) probably_damaging(0.987) TCGA-EE-A2MP-06 4 48027085 48027085 G A NIPAL1 Missense_Mutation p.G16E 0.32 deleterious(0) possibly_damaging(0.873) TCGA-EE-A2MP-06 4 5624458 5624458 G A EVC2 Silent p.P769P 0.40 TCGA-EE-A2MP-06 4 72413422 72413422 G A SLC4A4 Missense_Mutation p.M893I 0.31 deleterious(0.04) benign(0.439) TCGA-EE-A2MP-06 4 8469649 8469649 C T TRMT44 Silent p.L501L 0.08 TCGA-EE-A2MP-06 4 941538 941538 C T TMEM175 Missense_Mutation p.P4L 0.29 tolerated_low_confidence(0.21) benign(0.006) TCGA-EE-A2MP-06 4 96222867 96222867 G A UNC5C Missense_Mutation p.S127L 0.39 deleterious(0.01) benign(0.051) TCGA-EE-A2MP-06 5 102423587 102423587 A G GIN1 3'UTR 0.59 TCGA-EE-A2MP-06 5 118513857 118513857 A G DMXL1 Silent p.L2351L 0.24 TCGA-EE-A2MP-06 5 135692901 135692901 C T TRPC7 Missense_Mutation p.V59I 0.26 tolerated(0.16) benign(0.246) TCGA-EE-A2MP-06 5 135692902 135692902 C T TRPC7 Silent p.V58V 0.25 TCGA-EE-A2MP-06 5 13753560 13753560 C T DNAH5 Missense_Mutation p.A3552T 0.26 possibly_damaging(0.483) TCGA-EE-A2MP-06 5 137761262 137761262 A T KDM3B Missense_Mutation p.I1468F 0.17 tolerated(0.06) benign(0.122) TCGA-EE-A2MP-06 5 140166314 140166314 C T PCDHA1 Missense_Mutation p.L147F 0.17 tolerated_low_confidence(0.47) benign(0.429) TCGA-EE-A2MP-06 5 140229320 140229320 G A PCDHA9 Missense_Mutation p.D414N 0.16 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-EE-A2MP-06 5 140262124 140262124 G A PCDHA13 Missense_Mutation p.D91N 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MP-06 5 140262587 140262587 C T PCDHA13 Missense_Mutation p.S245F 0.11 tolerated_low_confidence(0.12) benign(0.038) TCGA-EE-A2MP-06 5 140262588 140262588 C A PCDHA13 Silent p.S245S 0.14 TCGA-EE-A2MP-06 5 140431126 140431126 C T PCDHB1 Missense_Mutation p.S24F 0.15 tolerated(0.14) benign(0.006) TCGA-EE-A2MP-06 5 140480591 140480591 G A PCDHB3 Missense_Mutation p.E120K 0.43 deleterious_low_confidence(0.03) benign(0.034) TCGA-EE-A2MP-06 5 140572753 140572753 T C PCDHB10 Silent p.L210L 0.44 TCGA-EE-A2MP-06 5 140764776 140764776 C T PCDHGA7 Silent p.F770F 0.50 TCGA-EE-A2MP-06 5 148388436 148388436 G A SH3TC2 Silent p.A1152A 0.25 TCGA-EE-A2MP-06 5 150411944 150411944 G A TNIP1 Missense_Mutation p.P594S 0.57 deleterious(0.05) benign(0.025) TCGA-EE-A2MP-06 5 15936615 15936615 C T FBXL7 Missense_Mutation p.P266S 0.27 tolerated(0.18) probably_damaging(0.992) TCGA-EE-A2MP-06 5 176932020 176932020 C T DOK3 Nonsense_Mutation p.W211* 0.16 TCGA-EE-A2MP-06 5 180335686 180335686 C T BTNL8 Silent p.A50A 0.22 TCGA-EE-A2MP-06 5 26915843 26915843 C T CDH9 Missense_Mutation p.E140K 0.26 deleterious(0) benign(0.352) TCGA-EE-A2MP-06 5 26916004 26916004 C T CDH9 Missense_Mutation p.G86E 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MP-06 5 35954476 35954476 C T UGT3A1 Missense_Mutation p.G467E 0.62 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MP-06 5 39383123 39383123 G A DAB2 Missense_Mutation p.S313F 0.22 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A2MP-06 5 54466486 54466486 C T CDC20B Intron 0.24 TCGA-EE-A2MP-06 5 55206402 55206402 C T IL31RA Missense_Mutation p.S515F 0.54 deleterious(0) possibly_damaging(0.727) TCGA-EE-A2MP-06 5 82948574 82948574 A T HAPLN1 Missense_Mutation p.V57D 0.40 deleterious(0) probably_damaging(0.941) TCGA-EE-A2MP-06 5 82948575 82948575 C T HAPLN1 Missense_Mutation p.V57I 0.39 tolerated(0.53) benign(0.05) TCGA-EE-A2MP-06 5 96225001 96225001 C T ERAP2 Missense_Mutation p.S321F 0.29 deleterious(0.02) benign(0.007) TCGA-EE-A2MP-06 6 108041819 108041819 C T SCML4 Intron 0.61 TCGA-EE-A2MP-06 6 112017611 112017611 C T FYN Missense_Mutation p.G304D 0.50 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2MP-06 6 112017612 112017612 C T FYN Missense_Mutation p.G304S 0.48 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A2MP-06 6 117245850 117245850 G A RFX6 Missense_Mutation p.R525Q 0.56 tolerated(0.06) possibly_damaging(0.556) TCGA-EE-A2MP-06 6 12161705 12161705 G A HIVEP1 Missense_Mutation p.G2174E 0.51 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2MP-06 6 21201483 21201483 G A CDKAL1 Missense_Mutation p.G509E 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MP-06 6 28542960 28542960 G A SCAND3 Nonsense_Mutation p.Q508* 0.31 TCGA-EE-A2MP-06 6 29454838 29454838 C T MAS1L Missense_Mutation p.S281N 0.16 deleterious(0) benign(0.288) TCGA-EE-A2MP-06 6 31541257 31541257 C T LTA Silent p.V135V 0.13 TCGA-EE-A2MP-06 6 32170339 32170339 G A NOTCH4 Missense_Mutation p.S1090F 0.48 deleterious(0.02) benign(0.008) TCGA-EE-A2MP-06 6 32609191 32609191 G A HLA-DQA1 Missense_Mutation p.E63K 0.16 tolerated(0.81) benign(0.002) TCGA-EE-A2MP-06 6 38560556 38560556 G A BTBD9 Silent p.L204L 0.39 TCGA-EE-A2MP-06 6 52943611 52943611 C T FBXO9 Missense_Mutation p.R118C 0.35 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MP-06 6 6145907 6145907 A G F13A1 Missense_Mutation p.L715P 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MP-06 6 63990433 63990433 C T LGSN Silent p.G341G 0.52 TCGA-EE-A2MP-06 6 73787061 73787061 C T KCNQ5 Silent p.I211I 0.57 TCGA-EE-A2MP-06 6 73879492 73879492 G A KCNQ5 Missense_Mutation p.D517N 0.56 deleterious(0.05) benign(0.155) TCGA-EE-A2MP-06 6 7576533 7576533 G A DSP Nonsense_Mutation p.W879* 0.30 TCGA-EE-A2MP-06 7 100552100 100552100 C T MUC3A Missense_Mutation p.P284L 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MP-06 7 107756451 107756451 C T LAMB4 Missense_Mutation p.E64K 0.49 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2MP-06 7 117199600 117199600 C T CFTR Missense_Mutation p.S492F 0.53 deleterious(0) possibly_damaging(0.694) TCGA-EE-A2MP-06 7 129944388 129944388 C G CPA4 Missense_Mutation p.S152W 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 7 140301597 140301597 G A DENND2A Missense_Mutation p.L201F 0.12 tolerated(0.08) benign(0.01) TCGA-EE-A2MP-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MP-06 7 142723902 142723902 C T OR9A2 Missense_Mutation p.M106I 0.44 tolerated(0.07) benign(0.001) TCGA-EE-A2MP-06 7 147183076 147183076 G A CNTNAP2 Missense_Mutation p.D574N 0.19 tolerated(0.52) benign(0.085) TCGA-EE-A2MP-06 7 148769064 148769064 G A ZNF786 Missense_Mutation p.P267L 0.35 deleterious(0.01) possibly_damaging(0.489) TCGA-EE-A2MP-06 7 148769065 148769065 G A ZNF786 Missense_Mutation p.P267S 0.35 deleterious(0.03) benign(0.051) TCGA-EE-A2MP-06 7 1517449 1517449 G A INTS1 Missense_Mutation p.S1585F 0.60 deleterious(0) possibly_damaging(0.797) TCGA-EE-A2MP-06 7 2279183 2279183 G A FTSJ2 Silent p.S56S 0.40 TCGA-EE-A2MP-06 7 34698136 34698136 G A NPSR1 Missense_Mutation p.G38R 0.40 tolerated(0.36) benign(0.015) TCGA-EE-A2MP-06 7 4152926 4152926 G A SDK1 Missense_Mutation p.R1147Q 0.51 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MP-06 7 44189363 44189363 G A GCK Silent p.I226I 0.47 TCGA-EE-A2MP-06 7 4815281 4815281 G T AP5Z1 5'UTR 0.32 TCGA-EE-A2MP-06 7 5256236 5256236 A G WIPI2 Missense_Mutation p.I142V 0.52 deleterious(0) benign(0.443) TCGA-EE-A2MP-06 7 81381519 81381519 C G HGF Missense_Mutation p.R181P 0.45 tolerated(0.1) possibly_damaging(0.888) TCGA-EE-A2MP-06 7 92730924 92730924 C T SAMD9 Missense_Mutation p.G1496E 0.36 tolerated(0.18) benign(0.028) TCGA-EE-A2MP-06 7 99704431 99704431 C T AP4M1 Missense_Mutation p.P430S 0.14 tolerated(0.13) benign(0.005) TCGA-EE-A2MP-06 8 117658804 117658824 CTGGCGCTGCATATTCTCCTG - EIF3H In_Frame_Del p.Q283_Q289del 0.21 TCGA-EE-A2MP-06 8 120651034 120651034 G A ENPP2 5'UTR 0.42 TCGA-EE-A2MP-06 8 125989827 125989827 T C ZNF572 Silent p.P439P 0.40 TCGA-EE-A2MP-06 8 144940534 144940534 G A EPPK1 Silent p.I2296I 0.09 TCGA-EE-A2MP-06 8 24323234 24323234 C T ADAM7 Missense_Mutation p.S112F 0.23 tolerated(0.12) probably_damaging(0.975) TCGA-EE-A2MP-06 8 29194670 29194670 C T DUSP4 Missense_Mutation p.R353Q 0.36 tolerated(0.35) benign(0.15) TCGA-EE-A2MP-06 8 30948414 30948414 C T WRN Silent p.I595I 0.18 TCGA-EE-A2MP-06 8 55539965 55539965 G A RP1 Missense_Mutation p.E1175K 0.47 tolerated(0.57) benign(0.015) TCGA-EE-A2MP-06 8 61732609 61732609 G A CHD7 Missense_Mutation p.R886Q 0.25 probably_damaging(0.986) TCGA-EE-A2MP-06 8 68007696 68007696 C T CSPP1 Nonsense_Mutation p.R227* 0.37 TCGA-EE-A2MP-06 8 68999972 68999972 C T PREX2 Missense_Mutation p.P681S 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MP-06 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.21 TCGA-EE-A2MP-06 8 94809558 94809558 G A TMEM67 Splice_Site p.X654_splice 0.30 TCGA-EE-A2MP-06 8 95164197 95164197 T G CDH17 Missense_Mutation p.Q565H 0.11 tolerated(0.23) benign(0.289) TCGA-EE-A2MP-06 8 95538606 95538606 C T KIAA1429 Silent p.G622G 0.23 TCGA-EE-A2MP-06 9 100431132 100431132 G A NCBP1 Missense_Mutation p.S674N 0.24 tolerated(0.4) benign(0.027) TCGA-EE-A2MP-06 9 107288604 107288604 T A OR13C4 Missense_Mutation p.Y296F 0.43 deleterious(0) possibly_damaging(0.524) TCGA-EE-A2MP-06 9 111617367 111617367 C T ACTL7B Missense_Mutation p.E282K 0.41 tolerated(0.09) benign(0.048) TCGA-EE-A2MP-06 9 118974139 118974139 G A PAPPA Missense_Mutation p.G616R 0.19 deleterious(0.03) benign(0.06) TCGA-EE-A2MP-06 9 125330692 125330692 G A OR1L8 Missense_Mutation p.P22L 0.22 deleterious(0.01) benign(0.053) TCGA-EE-A2MP-06 9 125673909 125673909 G A ZBTB6 Missense_Mutation p.P148L 0.32 tolerated(0.17) benign(0) TCGA-EE-A2MP-06 9 128347848 128347848 C T MAPKAP1 Silent p.R219R 0.22 TCGA-EE-A2MP-06 9 135927462 135927462 C T GTF3C5 Missense_Mutation p.P262S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MP-06 9 135927463 135927463 C T GTF3C5 Missense_Mutation p.P262L 0.43 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MP-06 9 135974158 135974158 G A RALGDS Intron 0.14 TCGA-EE-A2MP-06 9 139910781 139910781 G A ABCA2 Silent p.S1022S 0.26 TCGA-EE-A2MP-06 9 140161467 140161467 G A NELFB Silent p.V389V 0.13 TCGA-EE-A2MP-06 9 140161468 140161468 G A NELFB Missense_Mutation p.D390N 0.13 tolerated(0.95) benign(0.017) TCGA-EE-A2MP-06 9 21217173 21217173 C T IFNA16 Missense_Mutation p.M44I 0.65 deleterious(0.02) possibly_damaging(0.794) TCGA-EE-A2MP-06 9 35092421 35092421 G A PIGO Missense_Mutation p.A488V 0.43 tolerated(1) benign(0.003) TCGA-EE-A2MP-06 9 71098840 71098840 C T PGM5 Missense_Mutation p.A452V 0.51 deleterious(0.04) benign(0.01) TCGA-EE-A2MP-06 9 73164507 73164507 C T TRPM3 Missense_Mutation p.D1208N 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MP-06 X 100381742 100381742 C T CENPI Silent p.F244F 0.30 TCGA-EE-A2MP-06 X 100486727 100486727 C T DRP2 Missense_Mutation p.L31F 0.28 tolerated_low_confidence(0.11) benign(0.441) TCGA-EE-A2MP-06 X 101139525 101139525 T G ZMAT1 Missense_Mutation p.K292Q 0.21 deleterious(0.01) benign(0.021) TCGA-EE-A2MP-06 X 105881014 105881014 A G CXorf57 Missense_Mutation p.Y478C 0.22 tolerated(0.07) benign(0.402) TCGA-EE-A2MP-06 X 107824250 107824250 G A COL4A5 Missense_Mutation p.G310E 0.36 unknown(0) TCGA-EE-A2MP-06 X 111697959 111697959 G A ZCCHC16 Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MP-06 X 119070327 119070327 C T NKAP Silent p.S202S 0.37 TCGA-EE-A2MP-06 X 122387391 122387391 G A GRIA3 Missense_Mutation p.R169Q 0.28 tolerated(0.11) possibly_damaging(0.87) TCGA-EE-A2MP-06 X 123657238 123657238 C A TENM1 Missense_Mutation p.R1003S 0.32 tolerated(0.13) benign(0.008) TCGA-EE-A2MP-06 X 139866498 139866498 C T CDR1 Missense_Mutation p.D12N 0.30 deleterious(0.04) possibly_damaging(0.728) TCGA-EE-A2MP-06 X 1460719 1460719 G A IL3RA Missense_Mutation p.E21K 0.44 tolerated(0.54) benign(0.009) TCGA-EE-A2MP-06 X 149100870 149100870 C T CXorf40B Silent p.V123V 0.26 TCGA-EE-A2MP-06 X 151283696 151283696 C T RP11-1007I13.4 RNA 0.37 TCGA-EE-A2MP-06 X 152939643 152939643 G A PNCK 5'UTR 0.57 TCGA-EE-A2MP-06 X 153608118 153608118 C T EMD Missense_Mutation p.P51S 0.22 tolerated(0.13) benign(0.139) TCGA-EE-A2MP-06 X 153944500 153944500 C T GAB3 Silent p.V59V 0.56 TCGA-EE-A2MP-06 X 154490183 154490183 G A RAB39B Nonsense_Mutation p.Q183* 0.34 TCGA-EE-A2MP-06 X 154490184 154490184 G A RAB39B Silent p.I182I 0.36 TCGA-EE-A2MP-06 X 155004375 155004375 C T SPRY3 Missense_Mutation p.P281L 0.39 deleterious(0.01) benign(0.073) TCGA-EE-A2MP-06 X 155004376 155004376 C A SPRY3 Silent p.P281P 0.39 TCGA-EE-A2MP-06 X 15560224 15560224 G A BMX Missense_Mutation p.G505E 0.43 tolerated(0.15) probably_damaging(1) TCGA-EE-A2MP-06 X 3030306 3030306 C T ARSF Silent p.F494F 0.28 TCGA-EE-A2MP-06 X 3239265 3239265 C T MXRA5 Silent p.R1487R 0.18 TCGA-EE-A2MP-06 X 37545385 37545385 C T XK Silent p.F57F 0.46 TCGA-EE-A2MP-06 X 47444746 47444746 C G TIMP1 Intron 0.12 TCGA-EE-A2MP-06 X 51076169 51076169 G A NUDT10 Missense_Mutation p.E118K 0.33 tolerated(0.47) benign(0.003) TCGA-EE-A2MP-06 X 69419695 69419695 C T DGAT2L6 Missense_Mutation p.T77I 0.15 tolerated(0.24) probably_damaging(0.945) TCGA-EE-A2MP-06 X 69419696 69419696 C T DGAT2L6 Silent p.T77T 0.15 TCGA-EE-A2MP-06 X 70612480 70612480 T - TAF1 Frame_Shift_Del p.L968Rfs*2 0.35 TCGA-EE-A2MP-06 X 72667312 72667312 C T CDX4 Missense_Mutation p.P75S 0.42 tolerated(0.19) possibly_damaging(0.857) TCGA-EE-A2MP-06 X 77243950 77243950 G A ATP7A Silent p.K111K 0.16 TCGA-EE-A2MQ-06 10 114190594 114190594 G A ZDHHC6 Nonsense_Mutation p.Q404* 0.39 TCGA-EE-A2MQ-06 10 114925434 114925434 C T TCF7L2 Silent p.P504P 0.36 TCGA-EE-A2MQ-06 10 125521553 125521553 C T CPXM2 Missense_Mutation p.E538K 0.35 tolerated(0.06) benign(0.446) TCGA-EE-A2MQ-06 10 131639280 131639280 A T EBF3 Missense_Mutation p.N454K 0.38 deleterious_low_confidence(0.04) benign(0.085) TCGA-EE-A2MQ-06 10 131639281 131639281 T G EBF3 Missense_Mutation p.N454T 0.37 deleterious_low_confidence(0.02) benign(0.007) TCGA-EE-A2MQ-06 10 131671784 131671784 G A EBF3 Missense_Mutation p.S238F 0.38 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2MQ-06 10 13336537 13336537 C T PHYH Missense_Mutation p.R102K 0.28 tolerated(0.61) benign(0.075) TCGA-EE-A2MQ-06 10 47000166 47000166 C T GPRIN2 Missense_Mutation p.S429F 0.31 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MQ-06 10 5009146 5009146 T G AKR1C1 Missense_Mutation p.L94V 0.08 deleterious(0) benign(0.151) TCGA-EE-A2MQ-06 10 61834621 61834621 C T ANK3 Silent p.A2006A 0.31 TCGA-EE-A2MQ-06 10 63170087 63170087 G A TMEM26 Missense_Mutation p.T367I 0.38 tolerated_low_confidence(0.11) benign(0.002) TCGA-EE-A2MQ-06 10 74658714 74658714 G A OIT3 Silent p.T118T 0.36 TCGA-EE-A2MQ-06 10 84745267 84745267 C A NRG3 Missense_Mutation p.A666D 0.63 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A2MQ-06 10 85971455 85971455 G A CDHR1 Missense_Mutation p.G513R 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MQ-06 10 95452438 95452438 G A FRA10AC1 Silent p.F115F 0.38 TCGA-EE-A2MQ-06 10 96824691 96824691 G A CYP2C8 Silent p.L170L 0.35 TCGA-EE-A2MQ-06 11 107959385 107959385 T C CUL5 Missense_Mutation p.V437A 0.29 tolerated(0.18) possibly_damaging(0.879) TCGA-EE-A2MQ-06 11 109294955 109294955 C T C11orf87 3'UTR 0.46 TCGA-EE-A2MQ-06 11 111749896 111749896 C T FDXACB1 5'UTR 0.33 TCGA-EE-A2MQ-06 11 114112908 114112908 C T ZBTB16 Silent p.F491F 0.36 TCGA-EE-A2MQ-06 11 117100225 117100225 G A PCSK7 Silent p.A112A 0.49 TCGA-EE-A2MQ-06 11 12246316 12246316 G C MICAL2 Missense_Mutation p.R546P 0.37 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MQ-06 11 123848156 123848156 G A OR10S1 Silent p.F81F 0.44 TCGA-EE-A2MQ-06 11 124180459 124180459 G A OR8D1 Silent p.F68F 0.38 TCGA-EE-A2MQ-06 11 2991032 2991032 C G NAP1L4 Splice_Site p.X178_splice 0.39 TCGA-EE-A2MQ-06 11 36596800 36596800 C T RAG1 Missense_Mutation p.P649L 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MQ-06 11 36597825 36597825 C T RAG1 Silent p.L991L 0.35 TCGA-EE-A2MQ-06 11 48238697 48238697 G A OR4B1 Silent p.L112L 0.32 TCGA-EE-A2MQ-06 11 4944836 4944836 G A OR51G1 Missense_Mutation p.S245F 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MQ-06 11 5153784 5153784 C T OR52A5 Missense_Mutation p.G30E 0.45 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MQ-06 11 5510825 5510825 G T OR52D1 Nonsense_Mutation p.G297* 0.41 TCGA-EE-A2MQ-06 11 5537318 5537318 C T UBQLNL Silent p.T118T 0.44 TCGA-EE-A2MQ-06 11 55761196 55761196 C T OR5F1 Silent p.A302A 0.26 TCGA-EE-A2MQ-06 11 56230020 56230020 C T OR5M9 Missense_Mutation p.M286I 0.35 deleterious(0.04) benign(0.003) TCGA-EE-A2MQ-06 11 57137455 57137455 C T P2RX3 Silent p.F393F 0.56 TCGA-EE-A2MQ-06 11 61960914 61960914 T G SCGB1D1 3'UTR 0.31 TCGA-EE-A2MQ-06 11 61960915 61960915 T A SCGB1D1 3'UTR 0.32 TCGA-EE-A2MQ-06 11 65688816 65688816 C T DRAP1 Silent p.F176F 0.28 TCGA-EE-A2MQ-06 11 67270001 67270001 C T PITPNM1 Nonsense_Mutation p.W89* 0.41 TCGA-EE-A2MQ-06 11 75509401 75509401 C T DGAT2 Silent p.I313I 0.39 TCGA-EE-A2MQ-06 11 7984813 7984813 C T NLRP10 Missense_Mutation p.G77D 0.23 tolerated(0.09) benign(0.393) TCGA-EE-A2MQ-06 11 82644950 82644950 A G C11orf82 Missense_Mutation p.H857R 0.38 tolerated(0.15) benign(0) TCGA-EE-A2MQ-06 11 93103287 93103287 C T CCDC67 Nonsense_Mutation p.Q161* 0.36 TCGA-EE-A2MQ-06 11 93797623 93797623 C T HEPHL1 Missense_Mutation p.P252L 0.28 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A2MQ-06 11 93800808 93800808 C T HEPHL1 Missense_Mutation p.R319W 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 11 93844973 93844973 G A HEPHL1 Silent p.V1131V 0.41 TCGA-EE-A2MQ-06 12 103240729 103240729 C T PAH Missense_Mutation p.E305K 0.38 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MQ-06 12 112690352 112690352 G A HECTD4 Intron 0.40 TCGA-EE-A2MQ-06 12 133372444 133372444 G A GOLGA3 Silent p.S821S 0.46 TCGA-EE-A2MQ-06 12 24985744 24985744 G A BCAT1 Silent p.A331A 0.58 TCGA-EE-A2MQ-06 12 333178 333178 C T SLC6A13 Missense_Mutation p.G431R 0.28 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MQ-06 12 46321226 46321226 G A SCAF11 Missense_Mutation p.S753F 0.40 deleterious(0.04) benign(0.093) TCGA-EE-A2MQ-06 12 48133923 48133923 C T RAPGEF3 Splice_Site p.X791_splice 0.42 TCGA-EE-A2MQ-06 12 48133924 48133924 C T RAPGEF3 Silent p.L791L 0.38 TCGA-EE-A2MQ-06 12 49421020 49421020 G A KMT2D Missense_Mutation p.P4910L 0.42 unknown(0) TCGA-EE-A2MQ-06 12 49421021 49421021 G A KMT2D Missense_Mutation p.P4910S 0.41 unknown(0) TCGA-EE-A2MQ-06 12 49434624 49434624 G A KMT2D Missense_Mutation p.P2310L 0.26 possibly_damaging(0.784) TCGA-EE-A2MQ-06 12 56492231 56492231 C T ERBB3 Intron 0.38 TCGA-EE-A2MQ-06 12 57110776 57110776 G A NACA Intron 0.39 TCGA-EE-A2MQ-06 12 72969158 72969158 G A TRHDE Missense_Mutation p.R707Q 0.37 tolerated(0.47) benign(0.09) TCGA-EE-A2MQ-06 12 72969159 72969159 G A TRHDE Silent p.R707R 0.37 TCGA-EE-A2MQ-06 12 7477098 7477098 C T ACSM4 Silent p.Y480Y 0.36 TCGA-EE-A2MQ-06 12 76740943 76740944 CT - BBS10 Frame_Shift_Del p.E274Vfs*29 0.18 TCGA-EE-A2MQ-06 12 77203529 77203529 A G ZDHHC17 Silent p.K145K 0.45 TCGA-EE-A2MQ-06 12 77244685 77244685 C T ZDHHC17 Missense_Mutation p.R607C 0.37 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MQ-06 12 88472896 88472896 G A CEP290 Silent p.I1779I 0.38 TCGA-EE-A2MQ-06 12 88912503 88912503 C A KITLG Missense_Mutation p.V112L 0.30 tolerated(0.72) benign(0.005) TCGA-EE-A2MQ-06 12 95456372 95456372 G A NR2C1 Missense_Mutation p.P66L 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-EE-A2MQ-06 12 9717754 9717754 G T RP11-726G1.1 RNA 0.18 TCGA-EE-A2MQ-06 13 21303131 21303131 G C N6AMT2 3'UTR 0.50 TCGA-EE-A2MQ-06 13 29600817 29600817 C T MTUS2 Missense_Mutation p.S671L 0.33 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A2MQ-06 13 58299446 58299446 G A PCDH17 3'UTR 0.29 TCGA-EE-A2MQ-06 13 58299447 58299447 G A PCDH17 3'UTR 0.30 TCGA-EE-A2MQ-06 13 99171669 99171669 G A STK24 Missense_Mutation p.S46F 0.77 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MQ-06 14 101407515 101407515 C T SNORD113-7 RNA 0.78 TCGA-EE-A2MQ-06 14 22133660 22133660 C T OR4E2 Missense_Mutation p.R122C 0.76 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 14 23898283 23898283 C T MYH7 Missense_Mutation p.A430T 0.66 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2MQ-06 14 74824954 74824954 G A VRTN Missense_Mutation p.D490N 0.79 tolerated(0.43) benign(0.019) TCGA-EE-A2MQ-06 14 91805692 91805692 C T CCDC88C Missense_Mutation p.E247K 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 15 21071256 21071256 C T POTEB2 Missense_Mutation p.D119N 0.11 tolerated(0.07) possibly_damaging(0.827) TCGA-EE-A2MQ-06 15 34080582 34080582 C T RYR3 Silent p.I3251I 0.43 TCGA-EE-A2MQ-06 15 57913876 57913876 G A MYZAP Missense_Mutation p.R130Q 0.36 tolerated(1) benign(0.001) TCGA-EE-A2MQ-06 15 62208096 62208096 G A VPS13C Silent p.F2727F 0.35 TCGA-EE-A2MQ-06 15 68641186 68641186 A G ITGA11 Silent p.F371F 0.77 TCGA-EE-A2MQ-06 15 74328066 74328066 C T PML Intron 0.37 TCGA-EE-A2MQ-06 16 11931567 11931567 A G RSL1D1 3'UTR 0.30 TCGA-EE-A2MQ-06 16 12798735 12798735 C G CPPED1 Missense_Mutation p.W154S 0.38 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2MQ-06 16 19070812 19070812 C T TMC7 Missense_Mutation p.S701F 0.37 tolerated(0.1) benign(0.003) TCGA-EE-A2MQ-06 16 20638546 20638546 G A ACSM1 Silent p.F464F 0.42 TCGA-EE-A2MQ-06 16 23489773 23489773 G A GGA2 Missense_Mutation p.T403M 0.35 tolerated(0.25) benign(0.008) TCGA-EE-A2MQ-06 16 23614733 23614733 A G PALB2 3'UTR 0.40 TCGA-EE-A2MQ-06 16 24202506 24202506 G A PRKCB Silent p.E606E 0.40 TCGA-EE-A2MQ-06 16 24372868 24372868 C T CACNG3 Missense_Mutation p.S211F 0.48 deleterious(0) possibly_damaging(0.635) TCGA-EE-A2MQ-06 16 24373178 24373178 C T CACNG3 Silent p.P314P 0.34 TCGA-EE-A2MQ-06 16 32264840 32264840 G A TP53TG3D Missense_Mutation p.G56R 0.30 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-EE-A2MQ-06 16 3640985 3640985 G T SLX4 Missense_Mutation p.P885Q 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MQ-06 16 4935885 4935885 C T PPL Missense_Mutation p.R924K 0.42 tolerated(0.96) benign(0.001) TCGA-EE-A2MQ-06 16 50259099 50259099 G A PAPD5 Missense_Mutation p.R553K 0.31 tolerated(0.86) benign(0.003) TCGA-EE-A2MQ-06 16 53190369 53190369 C T CHD9 Missense_Mutation p.P123L 0.35 probably_damaging(0.999) TCGA-EE-A2MQ-06 16 67221198 67221198 G A EXOC3L1 Missense_Mutation p.L324F 0.37 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MQ-06 16 71163640 71163640 T A HYDIN Missense_Mutation p.H377L 0.28 benign(0) TCGA-EE-A2MQ-06 16 71411590 71411590 C T CALB2 Silent p.T94T 0.32 TCGA-EE-A2MQ-06 16 77328904 77328904 G A ADAMTS18 Silent p.L974L 0.42 TCGA-EE-A2MQ-06 16 87723315 87723315 G A JPH3 Missense_Mutation p.G450E 0.57 tolerated(0.33) benign(0.002) TCGA-EE-A2MQ-06 16 89598932 89598932 C T SPG7 Silent p.I404I 0.45 TCGA-EE-A2MQ-06 17 10358527 10358527 C T MYH4 Missense_Mutation p.E754K 0.59 deleterious(0.02) benign(0.115) TCGA-EE-A2MQ-06 17 15950304 15950304 G A NCOR1 Missense_Mutation p.R2214C 0.68 probably_damaging(0.997) TCGA-EE-A2MQ-06 17 18387210 18387210 A G LGALS9C Missense_Mutation p.I21V 0.37 deleterious(0.02) probably_damaging(0.948) TCGA-EE-A2MQ-06 17 1943613 1943613 C T DPH1 Missense_Mutation p.S289F 0.48 tolerated(0.3) benign(0.014) TCGA-EE-A2MQ-06 17 38421357 38421357 G A WIPF2 Missense_Mutation p.R310K 0.41 tolerated(0.24) benign(0.301) TCGA-EE-A2MQ-06 17 39471564 39471564 C T KRTAP17-1 3'UTR 0.59 TCGA-EE-A2MQ-06 17 39578656 39578656 C T KRT37 Missense_Mutation p.E255K 0.57 deleterious(0) benign(0.063) TCGA-EE-A2MQ-06 17 43226488 43226488 A G HEXIM1 5'UTR 0.65 TCGA-EE-A2MQ-06 17 45759778 45759778 C T KPNB1 3'UTR 0.56 TCGA-EE-A2MQ-06 17 45925098 45925098 C A SP6 Missense_Mutation p.C233F 0.15 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MQ-06 17 61958244 61958244 G A GH2 Missense_Mutation p.P115L 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 17 6942182 6942182 G A SLC16A13 Missense_Mutation p.G352E 0.63 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MQ-06 17 7579310 7579310 A G TP53 Splice_Site p.X125_splice 0.66 TCGA-EE-A2MQ-06 18 44580798 44580798 G A KATNAL2 Silent p.G35G 0.61 TCGA-EE-A2MQ-06 19 10463201 10463201 T C TYK2 Missense_Mutation p.Y1076C 0.44 tolerated(1) benign(0) TCGA-EE-A2MQ-06 19 13192606 13192606 G A NFIX Silent p.Q397Q 0.42 TCGA-EE-A2MQ-06 19 13356002 13356002 C G CACNA1A Missense_Mutation p.E1648D 0.09 possibly_damaging(0.801) TCGA-EE-A2MQ-06 19 1495357 1495357 C T REEP6 Silent p.L60L 0.35 TCGA-EE-A2MQ-06 19 15072769 15072769 C T SLC1A6 Intron 0.56 TCGA-EE-A2MQ-06 19 17049249 17049249 C T CPAMD8 Missense_Mutation p.G981E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 19 17049250 17049250 C T CPAMD8 Missense_Mutation p.G981R 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 19 17088187 17088187 G A CPAMD8 Silent p.F630F 0.45 TCGA-EE-A2MQ-06 19 17295779 17295779 A G MYO9B Missense_Mutation p.I827V 0.38 tolerated(0.14) possibly_damaging(0.895) TCGA-EE-A2MQ-06 19 19217190 19217190 G T SLC25A42 Nonsense_Mutation p.E165* 0.18 TCGA-EE-A2MQ-06 19 35979739 35979739 C T KRTDAP Missense_Mutation p.E31K 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.523) TCGA-EE-A2MQ-06 19 39075739 39075739 G A RYR1 Missense_Mutation p.G4935S 0.52 possibly_damaging(0.472) TCGA-EE-A2MQ-06 19 42190895 42190895 G A CEACAM7 Silent p.L108L 0.22 TCGA-EE-A2MQ-06 19 42190896 42190896 G A CEACAM7 Silent p.T107T 0.22 TCGA-EE-A2MQ-06 19 42798167 42798167 C T CIC Missense_Mutation p.P1374L 0.22 probably_damaging(0.981) TCGA-EE-A2MQ-06 19 42801471 42801473 TTC - PAFAH1B3 In_Frame_Del p.K151del 0.53 TCGA-EE-A2MQ-06 19 43358331 43358331 C A PSG10P RNA 0.28 TCGA-EE-A2MQ-06 19 45213849 45213849 G A CEACAM16 3'UTR 0.49 TCGA-EE-A2MQ-06 19 50461731 50461731 C T SIGLEC11 Nonsense_Mutation p.W487* 0.67 TCGA-EE-A2MQ-06 19 54080023 54080023 G A ZNF331 Missense_Mutation p.R70K 0.54 tolerated(0.34) benign(0) TCGA-EE-A2MQ-06 19 56539552 56539552 C T NLRP5 Silent p.V651V 0.78 TCGA-EE-A2MQ-06 19 58472777 58472777 C T C19orf18 Missense_Mutation p.E172K 0.71 tolerated(0.16) possibly_damaging(0.801) TCGA-EE-A2MQ-06 19 6479052 6479052 G A DENND1C Silent p.P64P 0.32 TCGA-EE-A2MQ-06 19 9046631 9046631 C T MUC16 Missense_Mutation p.G11667E 0.23 benign(0.016) TCGA-EE-A2MQ-06 19 9057805 9057805 C T MUC16 Missense_Mutation p.E9881K 0.34 unknown(0) TCGA-EE-A2MQ-06 19 9801776 9801776 C T ZNF812 Missense_Mutation p.E135K 0.35 tolerated(1) probably_damaging(0.991) TCGA-EE-A2MQ-06 1 117146637 117146637 G A IGSF3 Silent p.I431I 0.33 TCGA-EE-A2MQ-06 1 117984892 117984892 C T MAN1A2 Missense_Mutation p.L299F 0.51 deleterious(0) possibly_damaging(0.809) TCGA-EE-A2MQ-06 1 120548030 120548030 G A NOTCH2 Nonsense_Mutation p.R113* 0.17 TCGA-EE-A2MQ-06 1 12887258 12887258 G A PRAMEF11 Missense_Mutation p.S200F 0.25 tolerated(0.08) benign(0.058) TCGA-EE-A2MQ-06 1 151070438 151070438 C T GABPB2 Silent p.L194L 0.42 TCGA-EE-A2MQ-06 1 153333206 153333206 C T S100A9 Silent p.F79F 0.39 TCGA-EE-A2MQ-06 1 154543885 154543885 G A CHRNB2 Missense_Mutation p.D196N 0.39 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MQ-06 1 162731115 162731115 C T DDR2 Silent p.L324L 0.42 TCGA-EE-A2MQ-06 1 16354561 16354561 C T CLCNKA Silent p.T305T 0.56 TCGA-EE-A2MQ-06 1 173839909 173839909 G A ZBTB37 Silent p.L182L 0.47 TCGA-EE-A2MQ-06 1 17657550 17657550 A C PADI4 Missense_Mutation p.K60T 0.09 tolerated(0.41) probably_damaging(0.979) TCGA-EE-A2MQ-06 1 197390978 197390978 G A CRB1 Missense_Mutation p.D674N 0.76 tolerated(0.06) benign(0.242) TCGA-EE-A2MQ-06 1 206325342 206325342 C - CTSE Frame_Shift_Del p.S191Pfs*7 0.52 TCGA-EE-A2MQ-06 1 207787808 207787808 G A CR1 Nonsense_Mutation p.W2212* 0.20 TCGA-EE-A2MQ-06 1 207787809 207787809 G A CR1 Nonsense_Mutation p.W2212* 0.20 TCGA-EE-A2MQ-06 1 20966400 20966400 G A PINK1 Missense_Mutation p.E231K 0.16 tolerated(0.09) probably_damaging(0.94) TCGA-EE-A2MQ-06 1 209879201 209879201 G A HSD11B1 Missense_Mutation p.G45E 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MQ-06 1 216497021 216497021 G A USH2A Missense_Mutation p.R449C 0.44 benign(0.052) TCGA-EE-A2MQ-06 1 220332750 220332750 G A RAB3GAP2 Missense_Mutation p.P1080L 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 1 221058069 221058069 C T HLX 3'UTR 0.21 TCGA-EE-A2MQ-06 1 22199211 22199211 G A HSPG2 Missense_Mutation p.H1311Y 0.19 benign(0.008) TCGA-EE-A2MQ-06 1 223178735 223178735 C T DISP1 Silent p.I1332I 0.45 TCGA-EE-A2MQ-06 1 223568218 223568218 G A C1orf65 Silent p.R467R 0.44 TCGA-EE-A2MQ-06 1 226349248 226349248 G A ACBD3 Missense_Mutation p.R238W 0.48 deleterious(0) possibly_damaging(0.689) TCGA-EE-A2MQ-06 1 233152877 233152877 C T PCNXL2 Silent p.T1543T 0.13 TCGA-EE-A2MQ-06 1 23419931 23419931 G A LUZP1 Missense_Mutation p.S275L 0.57 tolerated(0.09) benign(0.133) TCGA-EE-A2MQ-06 1 237774098 237774098 G T RYR2 Nonsense_Mutation p.E1574* 0.38 TCGA-EE-A2MQ-06 1 248059344 248059344 G A OR2W3 Silent p.G152G 0.15 TCGA-EE-A2MQ-06 1 248059574 248059574 G T OR2W3 Missense_Mutation p.R229L 0.28 deleterious(0) benign(0.342) TCGA-EE-A2MQ-06 1 248202226 248202226 G A OR2L2 Silent p.R219R 0.23 TCGA-EE-A2MQ-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.14 deleterious(0.03) benign(0.232) TCGA-EE-A2MQ-06 1 32051421 32051421 C T TINAGL1 Silent p.S387S 0.57 TCGA-EE-A2MQ-06 1 35480717 35480717 A G ZMYM6 Missense_Mutation p.S159P 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MQ-06 1 3639953 3639953 G A TP73 Missense_Mutation p.E218K 0.58 deleterious(0.03) benign(0.132) TCGA-EE-A2MQ-06 1 36809729 36809729 G A STK40 Silent p.T292T 0.67 TCGA-EE-A2MQ-06 1 38227621 38227621 G A EPHA10 Silent p.F102F 0.21 TCGA-EE-A2MQ-06 1 55118647 55118647 G A MROH7 Silent p.K16K 0.25 TCGA-EE-A2MQ-06 1 92528792 92528792 G A EPHX4 Silent p.V346V 0.31 TCGA-EE-A2MQ-06 1 94654865 94654865 C T ARHGAP29 Missense_Mutation p.G495R 0.29 tolerated(0.46) benign(0.005) TCGA-EE-A2MQ-06 20 18022193 18022193 C T OVOL2 Missense_Mutation p.V166I 0.55 deleterious(0.02) benign(0.141) TCGA-EE-A2MQ-06 20 34053976 34053976 C G CEP250 Missense_Mutation p.R147G 0.43 possibly_damaging(0.797) TCGA-EE-A2MQ-06 20 36841569 36841569 G A KIAA1755 Missense_Mutation p.R1160W 0.32 tolerated(1) benign(0) TCGA-EE-A2MQ-06 20 36841570 36841570 G A KIAA1755 Silent p.F1159F 0.32 TCGA-EE-A2MQ-06 20 41385183 41385183 G A PTPRT Missense_Mutation p.R260W 0.50 deleterious(0.01) possibly_damaging(0.795) TCGA-EE-A2MQ-06 20 45130122 45130122 C T ZNF334 Missense_Mutation p.R619K 0.38 tolerated(0.56) benign(0.004) TCGA-EE-A2MQ-06 20 60899214 60899214 G A LAMA5 Missense_Mutation p.A1897V 0.48 benign(0.054) TCGA-EE-A2MQ-06 21 11038861 11038861 G A BAGE2 RNA 0.34 TCGA-EE-A2MQ-06 21 11047514 11047514 C T BAGE2 RNA 0.05 TCGA-EE-A2MQ-06 22 17117968 17117968 C T TPTEP1 RNA 0.34 TCGA-EE-A2MQ-06 22 26688664 26688664 G A SEZ6L Silent p.R129R 0.51 TCGA-EE-A2MQ-06 22 32887122 32887122 C G FBXO7 Silent p.L307L 0.34 TCGA-EE-A2MQ-06 22 44645441 44645441 C T KIAA1644 3'UTR 0.38 TCGA-EE-A2MQ-06 2 108488586 108488586 G A RGPD4 Missense_Mutation p.E1376K 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MQ-06 2 152408283 152408283 C T NEB Missense_Mutation p.R6638Q 0.26 probably_damaging(0.999) TCGA-EE-A2MQ-06 2 155555217 155555217 T A KCNJ3 5'UTR 0.50 TCGA-EE-A2MQ-06 2 155555338 155555338 A G KCNJ3 Silent p.T17T 0.38 TCGA-EE-A2MQ-06 2 155566133 155566133 G A KCNJ3 Missense_Mutation p.G241S 0.36 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MQ-06 2 157439371 157439371 G C GPD2 Missense_Mutation p.E709Q 0.09 tolerated(0.14) benign(0.027) TCGA-EE-A2MQ-06 2 172666182 172666182 A C SLC25A12 Silent p.V413V 0.33 TCGA-EE-A2MQ-06 2 179325898 179325898 G A DFNB59 Missense_Mutation p.R319K 0.44 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-EE-A2MQ-06 2 179417368 179417368 C T TTN Missense_Mutation p.E30087K 0.44 TCGA-EE-A2MQ-06 2 179469522 179469522 G A TTN Silent p.T18098T 0.41 TCGA-EE-A2MQ-06 2 179583192 179583192 G A TTN Missense_Mutation p.S8214F 0.42 TCGA-EE-A2MQ-06 2 179598041 179598041 C T TTN Missense_Mutation p.D5327N 0.40 TCGA-EE-A2MQ-06 2 179642182 179642182 C T TTN Missense_Mutation p.G1537D 0.33 TCGA-EE-A2MQ-06 2 179718295 179718295 G A CCDC141 Silent p.S1039S 0.40 TCGA-EE-A2MQ-06 2 185731167 185731167 C T ZNF804A Silent p.L61L 0.31 TCGA-EE-A2MQ-06 2 185801484 185801484 C T ZNF804A Missense_Mutation p.S454F 0.34 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MQ-06 2 209168922 209168922 C T PIKFYVE Missense_Mutation p.P450S 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2MQ-06 2 219507273 219507273 C G ZNF142 Missense_Mutation p.E1322D 0.35 tolerated_low_confidence(0.08) benign(0.217) TCGA-EE-A2MQ-06 2 220354210 220354210 C T SPEG Missense_Mutation p.P2824S 0.49 benign(0) TCGA-EE-A2MQ-06 2 227915767 227915767 G A COL4A4 Missense_Mutation p.P1026S 0.40 unknown(0) TCGA-EE-A2MQ-06 2 228883267 228883267 G A SPHKAP Missense_Mutation p.S768F 0.38 tolerated(0.69) benign(0.027) TCGA-EE-A2MQ-06 2 228884482 228884482 C T SPHKAP Missense_Mutation p.R363K 0.39 tolerated(0.7) benign(0.002) TCGA-EE-A2MQ-06 2 230911383 230911383 G A SLC16A14 Silent p.F153F 0.36 TCGA-EE-A2MQ-06 2 231973408 231973408 C T HTR2B Silent p.E423E 0.35 TCGA-EE-A2MQ-06 2 232672283 232672283 C T COPS7B Silent p.P241P 0.67 TCGA-EE-A2MQ-06 2 233409492 233409492 G A CHRNG Silent p.P420P 0.38 TCGA-EE-A2MQ-06 2 238267684 238267684 T A COL6A3 Silent p.G2134G 0.41 TCGA-EE-A2MQ-06 2 26781361 26781361 C G OTOF Missense_Mutation p.G27R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 2 27150151 27150151 G A DPYSL5 Missense_Mutation p.E151K 0.52 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A2MQ-06 2 28843798 28843798 G A PLB1 Nonsense_Mutation p.W1160* 0.35 TCGA-EE-A2MQ-06 2 32859011 32859011 C T TTC27 Missense_Mutation p.P112L 0.25 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MQ-06 2 44102292 44102292 G A ABCG8 Missense_Mutation p.G499E 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MQ-06 2 51254945 51254945 C T NRXN1 Missense_Mutation p.G156E 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MQ-06 2 61454326 61454326 C T USP34 Missense_Mutation p.E2491K 0.44 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A2MQ-06 2 73188368 73188368 G A SFXN5 Silent p.L279L 0.30 TCGA-EE-A2MQ-06 2 96799703 96799703 C T ASTL Splice_Site p.X113_splice 0.33 TCGA-EE-A2MQ-06 3 121416568 121416568 C G GOLGB1 Missense_Mutation p.K934N 0.38 possibly_damaging(0.723) TCGA-EE-A2MQ-06 3 121973151 121973151 C T CASR Missense_Mutation p.P39S 0.40 tolerated(0.33) probably_damaging(0.962) TCGA-EE-A2MQ-06 3 122646720 122646720 G A SEMA5B Missense_Mutation p.S310L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MQ-06 3 126218899 126218899 C T UROC1 Splice_Site p.X475_splice 0.28 TCGA-EE-A2MQ-06 3 126218900 126218900 C T UROC1 Missense_Mutation p.G475R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 3 149193692 149193692 G A TM4SF4 Missense_Mutation p.R86Q 0.56 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A2MQ-06 3 150176427 150176427 T G TSC22D2 3'UTR 0.45 TCGA-EE-A2MQ-06 3 164697120 164697120 C T SI 3'UTR 0.29 TCGA-EE-A2MQ-06 3 164908061 164908061 G A SLITRK3 Silent p.P186P 0.40 TCGA-EE-A2MQ-06 3 21606092 21606092 T G ZNF385D Missense_Mutation p.I84L 0.45 deleterious(0.01) benign(0.013) TCGA-EE-A2MQ-06 3 27433266 27433266 G A SLC4A7 Missense_Mutation p.L1042F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 3 38674791 38674791 T C SCN5A Missense_Mutation p.N3S 0.25 tolerated_low_confidence(0.62) benign(0.087) TCGA-EE-A2MQ-06 3 432815 432815 C T CHL1 Missense_Mutation p.P922S 0.34 tolerated(0.07) possibly_damaging(0.447) TCGA-EE-A2MQ-06 3 45067941 45067941 G A CLEC3B Silent p.K29K 0.55 TCGA-EE-A2MQ-06 3 47449887 47449887 G A PTPN23 Missense_Mutation p.A413T 0.45 unknown(0) TCGA-EE-A2MQ-06 3 48936170 48936170 C A SLC25A20 Missense_Mutation p.G20C 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 3 52485804 52485804 C T TNNC1 Silent p.G91G 0.36 TCGA-EE-A2MQ-06 3 54537535 54537535 C T CACNA2D3 Missense_Mutation p.A133V 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MQ-06 3 57143635 57143635 G A IL17RD Silent p.F160F 0.40 TCGA-EE-A2MQ-06 3 73114652 73114652 C T PPP4R2 Nonsense_Mutation p.Q345* 0.30 TCGA-EE-A2MQ-06 3 99513893 99513893 C T COL8A1 Missense_Mutation p.P383L 0.44 deleterious(0.01) unknown(0) TCGA-EE-A2MQ-06 4 103556010 103556010 G A MANBA Missense_Mutation p.P784S 0.68 tolerated(0.09) benign(0.088) TCGA-EE-A2MQ-06 4 106157973 106157973 G A TET2 Silent p.Q958Q 0.67 TCGA-EE-A2MQ-06 4 109971325 109971325 C T COL25A1 Silent p.G126G 0.60 TCGA-EE-A2MQ-06 4 111542432 111542432 G A PITX2 Missense_Mutation p.T100I 0.75 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MQ-06 4 114288885 114288885 G A ANK2 Silent p.E3732E 0.62 TCGA-EE-A2MQ-06 4 115754787 115754787 G A NDST4 Missense_Mutation p.R791C 0.56 tolerated(0.18) benign(0.264) TCGA-EE-A2MQ-06 4 164247100 164247100 G A NPY1R Missense_Mutation p.P203S 0.70 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A2MQ-06 4 169846138 169846138 G T PALLD Missense_Mutation p.Q1089H 0.76 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A2MQ-06 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.57 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MQ-06 4 42445613 42445613 G C ATP8A1 Missense_Mutation p.A1031G 0.52 tolerated(0.16) benign(0.014) TCGA-EE-A2MQ-06 4 94751094 94751094 G A ATOH1 Silent p.G339G 0.72 TCGA-EE-A2MQ-06 5 101834325 101834325 G A SLCO6A1 Missense_Mutation p.S75F 0.45 tolerated(0.16) benign(0.325) TCGA-EE-A2MQ-06 5 112179639 112179639 C T APC Missense_Mutation p.P2783L 0.37 probably_damaging(1) TCGA-EE-A2MQ-06 5 13885252 13885252 C T DNAH5 Silent p.R943R 0.57 TCGA-EE-A2MQ-06 5 140237184 140237184 C G PCDHA10 Nonsense_Mutation p.Y517* 0.45 TCGA-EE-A2MQ-06 5 140741694 140741694 C T PCDHGB2 Silent p.F664F 0.75 TCGA-EE-A2MQ-06 5 161117247 161117247 G A GABRA6 Silent p.R238R 0.64 TCGA-EE-A2MQ-06 5 171765926 171765926 G A SH3PXD2B Missense_Mutation p.A728V 0.65 tolerated_low_confidence(0.27) benign(0.004) TCGA-EE-A2MQ-06 5 177548809 177548809 A G N4BP3 Missense_Mutation p.E481G 0.64 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A2MQ-06 5 35792539 35792539 C T SPEF2 Silent p.T1515T 0.55 TCGA-EE-A2MQ-06 5 36035825 36035825 C T UGT3A2 Missense_Mutation p.G516E 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MQ-06 5 5182218 5182218 C T ADAMTS16 Missense_Mutation p.S188L 0.51 tolerated(0.07) benign(0.004) TCGA-EE-A2MQ-06 5 80521617 80521618 - A RASGRF2 3'UTR 0.22 TCGA-EE-A2MQ-06 5 89986685 89986685 C T GPR98 Nonsense_Mutation p.R2260* 0.35 TCGA-EE-A2MQ-06 5 94030868 94030868 C T ANKRD32 Missense_Mutation p.L1010F 0.40 tolerated(0.14) benign(0.203) TCGA-EE-A2MQ-06 5 94207063 94207063 C T MCTP1 Missense_Mutation p.R699Q 0.41 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MQ-06 6 134491574 134491574 C T SGK1 Splice_Site p.X472_splice 0.38 TCGA-EE-A2MQ-06 6 146276122 146276122 T C SHPRH Missense_Mutation p.K113E 0.34 deleterious_low_confidence(0.01) benign(0.201) TCGA-EE-A2MQ-06 6 152847225 152847225 C T SYNE1 Missense_Mutation p.G72E 0.39 probably_damaging(0.983) TCGA-EE-A2MQ-06 6 161016452 161016452 C T LPA Missense_Mutation p.E1135K 0.42 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-EE-A2MQ-06 6 31105933 31105933 G A PSORS1C2 Missense_Mutation p.P69L 0.21 tolerated_low_confidence(0.11) benign(0) TCGA-EE-A2MQ-06 6 33169319 33169319 G A SLC39A7 Silent p.E99E 0.64 TCGA-EE-A2MQ-06 6 46800954 46800954 C T MEP1A Missense_Mutation p.P430S 0.48 tolerated(0.37) benign(0.201) TCGA-EE-A2MQ-06 6 46828604 46828604 C T GPR116 Missense_Mutation p.E743K 0.26 tolerated(0.52) benign(0.003) TCGA-EE-A2MQ-06 6 49416546 49416546 T G MUT Missense_Mutation p.Q476P 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MQ-06 6 52876951 52876951 G T ICK Silent p.S409S 0.38 TCGA-EE-A2MQ-06 6 64421505 64421505 C T PHF3 Silent p.L1341L 0.37 TCGA-EE-A2MQ-06 6 70944568 70944568 C T COL9A1 Missense_Mutation p.G730R 0.43 probably_damaging(0.993) TCGA-EE-A2MQ-06 6 7301720 7301720 G A SSR1 Silent p.A122A 0.29 TCGA-EE-A2MQ-06 6 84056034 84056034 C T ME1 Missense_Mutation p.G153E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 6 87970646 87970646 A T ZNF292 Silent p.S2433S 0.38 TCGA-EE-A2MQ-06 7 102669176 102669176 G A FBXL13 Missense_Mutation p.R30C 0.26 deleterious(0.03) benign(0.003) TCGA-EE-A2MQ-06 7 107642205 107642205 G A LAMB1 Intron 0.19 TCGA-EE-A2MQ-06 7 110303524 110303524 C T IMMP2L 3'UTR 0.71 TCGA-EE-A2MQ-06 7 117188775 117188775 C T CFTR Silent p.F430F 0.50 TCGA-EE-A2MQ-06 7 123594216 123594216 G A SPAM1 Missense_Mutation p.D198N 0.23 tolerated(0.65) benign(0.01) TCGA-EE-A2MQ-06 7 128370028 128370028 G A FAM71F1 Missense_Mutation p.G309E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 7 140434507 140434507 G A BRAF Missense_Mutation p.P731S 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MQ-06 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.53 deleterious(0) benign(0.411) TCGA-EE-A2MQ-06 7 141672661 141672661 T G TAS2R38 Missense_Mutation p.I277L 0.53 tolerated(0.28) benign(0.022) TCGA-EE-A2MQ-06 7 142032410 142032410 C T TRBV7-1 Missense_Mutation p.S77L 0.40 deleterious(0.02) benign(0.347) TCGA-EE-A2MQ-06 7 142326601 142326601 C T TRBV19 Missense_Mutation p.L11F 0.27 tolerated(0.88) probably_damaging(0.998) TCGA-EE-A2MQ-06 7 142749795 142749795 C T OR6V1 Missense_Mutation p.R120C 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2MQ-06 7 143748423 143748423 C T OR2A5 Missense_Mutation p.S310L 0.52 deleterious(0.04) benign(0.075) TCGA-EE-A2MQ-06 7 150945580 150945580 G A SMARCD3 Silent p.V23V 0.50 TCGA-EE-A2MQ-06 7 31617863 31617863 C T CCDC129 Missense_Mutation p.P355S 0.24 tolerated(0.08) benign(0.132) TCGA-EE-A2MQ-06 7 34125516 34125516 G A BMPER Silent p.V519V 0.56 TCGA-EE-A2MQ-06 7 36320782 36320782 G C EEPD1 Missense_Mutation p.R330P 0.44 deleterious(0) possibly_damaging(0.862) TCGA-EE-A2MQ-06 7 37936528 37936528 G A NME8 Missense_Mutation p.R534Q 0.56 tolerated(0.29) benign(0.067) TCGA-EE-A2MQ-06 7 53104047 53104047 C T POM121L12 Missense_Mutation p.S228F 0.31 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A2MQ-06 7 73008127 73008127 C A MLXIPL 3'UTR 0.36 TCGA-EE-A2MQ-06 7 83689827 83689827 C T SEMA3A Silent p.G167G 0.57 TCGA-EE-A2MQ-06 7 98559085 98559085 C T TRRAP Missense_Mutation p.P2224S 0.47 probably_damaging(0.928) TCGA-EE-A2MQ-06 7 98588089 98588089 T C TRRAP Silent p.L3205L 0.29 TCGA-EE-A2MQ-06 8 102611373 102611373 G A GRHL2 Silent p.E364E 0.35 TCGA-EE-A2MQ-06 8 104427664 104427664 G A DCAF13 Missense_Mutation p.R149K 0.51 deleterious_low_confidence(0.03) benign(0.003) TCGA-EE-A2MQ-06 8 113966914 113966914 G A CSMD3 Silent p.I473I 0.29 TCGA-EE-A2MQ-06 8 121301973 121301973 C T COL14A1 Nonsense_Mutation p.R1402* 0.32 TCGA-EE-A2MQ-06 8 124663820 124663820 G A KLHL38 Silent p.I449I 0.34 TCGA-EE-A2MQ-06 8 124664570 124664570 G A KLHL38 Silent p.A199A 0.35 TCGA-EE-A2MQ-06 8 139838922 139838922 G A COL22A1 Silent p.I316I 0.38 TCGA-EE-A2MQ-06 8 146068380 146068380 A G ZNF7 Missense_Mutation p.I630V 0.32 tolerated(0.36) benign(0.001) TCGA-EE-A2MQ-06 8 21550729 21550729 C T GFRA2 3'UTR 0.20 TCGA-EE-A2MQ-06 8 41550168 41550168 C T ANK1 Missense_Mutation p.E1327K 0.35 deleterious(0) possibly_damaging(0.492) TCGA-EE-A2MQ-06 8 8235486 8235486 G A SGK223 Missense_Mutation p.P145S 0.43 benign(0.13) TCGA-EE-A2MQ-06 8 95683873 95683873 G A ESRP1 Missense_Mutation p.G476R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 9 101767302 101767302 C T COL15A1 Silent p.S441S 0.68 TCGA-EE-A2MQ-06 9 105767302 105767302 C T CYLC2 Missense_Mutation p.S130L 0.67 tolerated(0.16) possibly_damaging(0.743) TCGA-EE-A2MQ-06 9 12695549 12695549 A C TYRP1 Missense_Mutation p.E140D 0.42 deleterious(0.05) possibly_damaging(0.885) TCGA-EE-A2MQ-06 9 135940600 135940600 A G CEL Missense_Mutation p.S175G 0.57 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MQ-06 9 136384008 136384008 G A TMEM8C Silent p.I129I 0.73 TCGA-EE-A2MQ-06 9 140110212 140110212 C T NDOR1 Missense_Mutation p.P464S 0.69 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MQ-06 9 140110213 140110213 C T NDOR1 Missense_Mutation p.P464L 0.72 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MQ-06 9 14639981 14639981 G A ZDHHC21 Silent p.A178A 0.30 TCGA-EE-A2MQ-06 9 34379725 34379725 A T C9orf24 Nonsense_Mutation p.C236* 0.37 TCGA-EE-A2MQ-06 9 6254462 6254462 G A IL33 Missense_Mutation p.G174D 0.28 tolerated(0.08) benign(0.034) TCGA-EE-A2MQ-06 X 102339344 102339344 C T NXF3 Missense_Mutation p.E93K 0.37 tolerated(0.19) benign(0.032) TCGA-EE-A2MQ-06 X 105132293 105132293 G A NRK Missense_Mutation p.E87K 0.33 deleterious(0) probably_damaging(0.916) TCGA-EE-A2MQ-06 X 106243183 106243183 C A MORC4 Missense_Mutation p.G6V 0.36 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-EE-A2MQ-06 X 106843795 106843795 C T FRMPD3 Silent p.L875L 0.19 TCGA-EE-A2MQ-06 X 110496372 110496372 G A CAPN6 Missense_Mutation p.R124C 0.40 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MQ-06 X 115592850 115592850 G A CT83 3'UTR 0.35 TCGA-EE-A2MQ-06 X 119004540 119004540 G A RNF113A 3'UTR 0.27 TCGA-EE-A2MQ-06 X 119565167 119565167 G A LAMP2 Intron 0.34 TCGA-EE-A2MQ-06 X 122754786 122754786 G A THOC2 Missense_Mutation p.P1416L 0.36 tolerated(0.26) benign(0.055) TCGA-EE-A2MQ-06 X 128873116 128873116 G A XPNPEP2 5'UTR 0.31 TCGA-EE-A2MQ-06 X 134690140 134690140 T C DDX26B Silent p.F369F 0.42 TCGA-EE-A2MQ-06 X 140993562 140993562 C T MAGEC1 Silent p.V124V 0.31 TCGA-EE-A2MQ-06 X 1460723 1460723 G A IL3RA Splice_Site p.X22_splice 0.36 TCGA-EE-A2MQ-06 X 149814235 149814235 G A MTM1 Missense_Mutation p.R253Q 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MQ-06 X 152815551 152815551 G A ATP2B3 Missense_Mutation p.E544K 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 X 153070562 153070562 G A PDZD4 Missense_Mutation p.P251L 0.52 tolerated(0.43) benign(0.002) TCGA-EE-A2MQ-06 X 153070563 153070563 G A PDZD4 Missense_Mutation p.P251S 0.51 tolerated(0.8) benign(0.003) TCGA-EE-A2MQ-06 X 15402086 15402086 C T FIGF 5'UTR 0.49 TCGA-EE-A2MQ-06 X 18189144 18189144 G A BEND2 Missense_Mutation p.P721L 0.35 tolerated(0.15) benign(0.079) TCGA-EE-A2MQ-06 X 3240932 3240932 C T MXRA5 Missense_Mutation p.E932K 0.31 tolerated(0.32) benign(0.006) TCGA-EE-A2MQ-06 X 3241563 3241563 C T MXRA5 Silent p.E721E 0.43 TCGA-EE-A2MQ-06 X 40496279 40496279 C T CXorf38 Missense_Mutation p.V201I 0.22 tolerated(0.14) benign(0.009) TCGA-EE-A2MQ-06 X 47041239 47041239 C G RBM10 Missense_Mutation p.T556S 0.08 tolerated(0.7) benign(0.001) TCGA-EE-A2MQ-06 X 50054483 50054483 G A CCNB3 Missense_Mutation p.G1105E 0.50 tolerated(0.56) benign(0.053) TCGA-EE-A2MQ-06 X 50659504 50659504 C A BMP15 Missense_Mutation p.P359Q 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A2MQ-06 X 63411267 63411267 G A AMER1 Missense_Mutation p.R634C 0.43 tolerated(0.25) benign(0.002) TCGA-EE-A2MQ-06 X 77245141 77245141 G A ATP7A Silent p.G341G 0.40 TCGA-EE-A2MQ-06 X 84347460 84347460 C T SATL1 3'UTR 0.54 TCGA-EE-A2MQ-06 X 99885784 99885784 G A TSPAN6 3'UTR 0.33 TCGA-EE-A2MR-06 10 100144800 100144800 G A PYROXD2 Silent p.L527L 0.11 TCGA-EE-A2MR-06 10 101636823 101636823 G A DNMBP 3'UTR 0.19 TCGA-EE-A2MR-06 10 102249077 102249077 G A SEC31B Missense_Mutation p.P1035S 0.12 tolerated(0.34) benign(0.014) TCGA-EE-A2MR-06 10 102505913 102505913 C T PAX2 5'UTR 0.20 TCGA-EE-A2MR-06 10 102566297 102566297 C T PAX2 Missense_Mutation p.R266W 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MR-06 10 102738913 102738913 G A SEMA4G Missense_Mutation p.A290T 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MR-06 10 102762545 102762545 C T LZTS2 Missense_Mutation p.P84S 0.19 tolerated(0.91) benign(0.001) TCGA-EE-A2MR-06 10 102763433 102763433 C T LZTS2 Missense_Mutation p.S193F 0.16 deleterious(0.05) possibly_damaging(0.836) TCGA-EE-A2MR-06 10 102763580 102763580 C T LZTS2 Missense_Mutation p.S242F 0.09 deleterious(0.05) probably_damaging(0.931) TCGA-EE-A2MR-06 10 103294527 103294527 C T BTRC Missense_Mutation p.R403C 0.12 deleterious(0.01) benign(0.302) TCGA-EE-A2MR-06 10 103900141 103900141 C T PPRC1 Missense_Mutation p.P626S 0.14 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2MR-06 10 104176438 104176438 G A PSD Missense_Mutation p.P120S 0.10 tolerated_low_confidence(0.33) benign(0) TCGA-EE-A2MR-06 10 104378825 104378825 C T SUFU Intron 0.10 TCGA-EE-A2MR-06 10 104486483 104486483 C T SFXN2 Silent p.I30I 0.12 TCGA-EE-A2MR-06 10 104594763 104594763 C T CYP17A1 Missense_Mutation p.E149K 0.12 deleterious(0.01) possibly_damaging(0.492) TCGA-EE-A2MR-06 10 105330665 105330665 G A NEURL1 Missense_Mutation p.R41Q 0.17 deleterious_low_confidence(0.04) benign(0.241) TCGA-EE-A2MR-06 10 105920818 105920818 C T WDR96 Missense_Mutation p.E1173K 0.24 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 10 105944858 105944858 A T WDR96 Missense_Mutation p.I686N 0.12 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 10 106075107 106075107 G A ITPRIP Silent p.L235L 0.10 TCGA-EE-A2MR-06 10 106976717 106976717 C T SORCS3 Silent p.I857I 0.12 TCGA-EE-A2MR-06 10 114168252 114168252 G A ACSL5 Missense_Mutation p.E225K 0.08 deleterious(0.02) probably_damaging(0.925) TCGA-EE-A2MR-06 10 114169359 114169359 C T ACSL5 Silent p.I265I 0.10 TCGA-EE-A2MR-06 10 115393910 115393910 C T NRAP Silent p.Q496Q 0.16 TCGA-EE-A2MR-06 10 115531816 115531816 C T PLEKHS1 Missense_Mutation p.H208Y 0.11 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 10 115986989 115986989 G A TDRD1 Missense_Mutation p.A1112T 0.08 deleterious(0.03) possibly_damaging(0.908) TCGA-EE-A2MR-06 10 118360595 118360595 C T PNLIPRP1 Silent p.F315F 0.10 TCGA-EE-A2MR-06 10 118365010 118365010 C T PNLIPRP1 Missense_Mutation p.L429F 0.09 tolerated(0.86) benign(0.001) TCGA-EE-A2MR-06 10 118681008 118681008 G A KIAA1598 Missense_Mutation p.R378W 0.17 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2MR-06 10 118681009 118681009 G A KIAA1598 Silent p.I377I 0.17 TCGA-EE-A2MR-06 10 11911447 11911447 C T PROSER2 Intron 0.11 TCGA-EE-A2MR-06 10 11971910 11971910 G A UPF2 Missense_Mutation p.P1255S 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A2MR-06 10 120353731 120353731 G A PRLHR Silent p.F342F 0.12 TCGA-EE-A2MR-06 10 120914643 120914643 G A SFXN4 Silent p.S221S 0.13 TCGA-EE-A2MR-06 10 121182770 121182770 C T GRK5 Silent p.A144A 0.08 TCGA-EE-A2MR-06 10 12143138 12143138 C T DHTKD1 Silent p.I618I 0.25 TCGA-EE-A2MR-06 10 121563788 121563788 C T INPP5F Missense_Mutation p.S407L 0.10 tolerated(0.06) benign(0.14) TCGA-EE-A2MR-06 10 12238095 12238095 C T NUDT5 5'UTR 0.18 TCGA-EE-A2MR-06 10 123298130 123298130 G A FGFR2 Missense_Mutation p.H242Y 0.17 tolerated(0.33) probably_damaging(0.995) TCGA-EE-A2MR-06 10 123324094 123324094 C T FGFR2 Splice_Site p.X126_splice 0.11 TCGA-EE-A2MR-06 10 123845802 123845802 G A TACC2 Missense_Mutation p.A1263T 0.10 possibly_damaging(0.588) TCGA-EE-A2MR-06 10 123903191 123903191 C T TACC2 Missense_Mutation p.S1935F 0.09 possibly_damaging(0.836) TCGA-EE-A2MR-06 10 123970341 123970341 C T TACC2 Missense_Mutation p.S2134F 0.08 probably_damaging(0.999) TCGA-EE-A2MR-06 10 123970902 123970902 C T TACC2 Missense_Mutation p.S2321F 0.16 probably_damaging(0.989) TCGA-EE-A2MR-06 10 124249080 124249080 G A HTRA1 Missense_Mutation p.E239K 0.12 deleterious(0) possibly_damaging(0.495) TCGA-EE-A2MR-06 10 124331842 124331842 C T DMBT1 Missense_Mutation p.S67F 0.13 tolerated_low_confidence(0.59) benign(0.104) TCGA-EE-A2MR-06 10 124351025 124351025 C T DMBT1 Missense_Mutation p.S723L 0.07 tolerated(0.17) unknown(0) TCGA-EE-A2MR-06 10 124358399 124358399 G A DMBT1 Nonsense_Mutation p.W1022* 0.11 TCGA-EE-A2MR-06 10 124598641 124598641 G A CUZD1 Missense_Mutation p.P114S 0.08 tolerated(0.18) probably_damaging(0.936) TCGA-EE-A2MR-06 10 124671177 124671177 G A FAM24A Silent p.T9T 0.11 TCGA-EE-A2MR-06 10 124672371 124672371 G A FAM24A Missense_Mutation p.M73I 0.21 tolerated(0.39) benign(0.055) TCGA-EE-A2MR-06 10 125514272 125514272 G A CPXM2 Missense_Mutation p.R642C 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 10 125804332 125804332 G A CHST15 Missense_Mutation p.S217F 0.14 tolerated(0.7) benign(0.045) TCGA-EE-A2MR-06 10 125805433 125805433 G A CHST15 Missense_Mutation p.S99F 0.17 deleterious(0.03) possibly_damaging(0.553) TCGA-EE-A2MR-06 10 126370431 126370431 G A FAM53B Silent p.P217P 0.25 TCGA-EE-A2MR-06 10 127569339 127569339 G A DHX32 Missense_Mutation p.P19S 0.09 tolerated_low_confidence(0.4) benign(0.386) TCGA-EE-A2MR-06 10 127693503 127693503 G A FANK1 Missense_Mutation p.R197Q 0.09 deleterious(0.04) probably_damaging(0.953) TCGA-EE-A2MR-06 10 12858259 12858259 C T CAMK1D Silent p.F255F 0.18 TCGA-EE-A2MR-06 10 128974285 128974285 C T FAM196A Silent p.G125G 0.11 TCGA-EE-A2MR-06 10 129846083 129846083 G A PTPRE Missense_Mutation p.G89R 0.09 deleterious(0.03) probably_damaging(0.939) TCGA-EE-A2MR-06 10 129868693 129868693 C T PTPRE Silent p.I424I 0.11 TCGA-EE-A2MR-06 10 129902429 129902429 G A MKI67 Silent p.L2559L 0.08 TCGA-EE-A2MR-06 10 13040470 13040470 G A CCDC3 Silent p.F139F 0.11 TCGA-EE-A2MR-06 10 131646736 131646736 C T EBF3 Missense_Mutation p.E341K 0.09 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A2MR-06 10 131761669 131761669 C T EBF3 Missense_Mutation p.E85K 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2MR-06 10 134059437 134059437 G A STK32C Silent p.I95I 0.20 TCGA-EE-A2MR-06 10 134755113 134755113 C T TTC40 Silent p.P96P 0.12 TCGA-EE-A2MR-06 10 134898364 134898364 C T GPR123 5'Flank 0.12 TCGA-EE-A2MR-06 10 135098992 135098992 G A TUBGCP2 Silent p.I649I 0.11 TCGA-EE-A2MR-06 10 135123753 135123753 C T ZNF511 Missense_Mutation p.P172L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 10 135340950 135340950 C T CYP2E1 Silent p.L17L 0.10 TCGA-EE-A2MR-06 10 135372836 135372836 G A SYCE1 Silent p.V55V 0.19 TCGA-EE-A2MR-06 10 13629062 13629062 C T PRPF18 5'UTR 0.17 TCGA-EE-A2MR-06 10 15255716 15255716 C T FAM171A1 Missense_Mutation p.G624E 0.29 tolerated(0.39) possibly_damaging(0.559) TCGA-EE-A2MR-06 10 15885240 15885240 G A FAM188A Missense_Mutation p.S69L 0.16 tolerated(0.61) benign(0.129) TCGA-EE-A2MR-06 10 17737055 17737058 GTTG - STAM Frame_Shift_Del p.E181Dfs*24 0.15 TCGA-EE-A2MR-06 10 21101837 21101837 C T NEBL Silent p.K793K 0.20 TCGA-EE-A2MR-06 10 21108375 21108375 C T NEBL Missense_Mutation p.R678Q 0.08 tolerated(0.08) benign(0.442) TCGA-EE-A2MR-06 10 24784088 24784088 G A KIAA1217 Missense_Mutation p.M599I 0.11 tolerated(0.15) possibly_damaging(0.882) TCGA-EE-A2MR-06 10 24809157 24809157 G A KIAA1217 Silent p.V761V 0.15 TCGA-EE-A2MR-06 10 24833394 24833394 C A KIAA1217 Missense_Mutation p.P1732H 0.08 tolerated(0.07) benign(0.09) TCGA-EE-A2MR-06 10 24909176 24909176 G A ARHGAP21 Missense_Mutation p.H550Y 0.18 tolerated(0.26) probably_damaging(0.936) TCGA-EE-A2MR-06 10 25313574 25313574 C T THNSL1 Silent p.G474G 0.17 TCGA-EE-A2MR-06 10 25464920 25464920 T A GPR158 Missense_Mutation p.F191I 0.28 tolerated(0.24) benign(0.23) TCGA-EE-A2MR-06 10 26462972 26462972 G A MYO3A Missense_Mutation p.R1260K 0.13 tolerated_low_confidence(0.47) benign(0.002) TCGA-EE-A2MR-06 10 26462973 26462973 G A MYO3A Silent p.R1260R 0.12 TCGA-EE-A2MR-06 10 27350157 27350157 G A ANKRD26 Missense_Mutation p.P460S 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2MR-06 10 27437927 27437927 G A YME1L1 Missense_Mutation p.P26S 0.24 deleterious_low_confidence(0.02) benign(0.334) TCGA-EE-A2MR-06 10 27499923 27499923 G A ACBD5 Missense_Mutation p.R342C 0.21 tolerated(0.15) benign(0) TCGA-EE-A2MR-06 10 27687393 27687393 G A PTCHD3 Missense_Mutation p.P712S 0.19 deleterious(0.03) benign(0.103) TCGA-EE-A2MR-06 10 27702340 27702340 C T PTCHD3 Silent p.L280L 0.09 TCGA-EE-A2MR-06 10 27702970 27702970 C T PTCHD3 Silent p.E70E 0.20 TCGA-EE-A2MR-06 10 27964478 27964478 G A MKX Silent p.L282L 0.31 TCGA-EE-A2MR-06 10 28101482 28101482 G A ARMC4 Missense_Mutation p.R1032C 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MR-06 10 28273157 28273157 C T ARMC4 Missense_Mutation p.G213E 0.21 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 10 28420502 28420502 T A MPP7 Missense_Mutation p.N145I 0.15 deleterious(0) possibly_damaging(0.85) TCGA-EE-A2MR-06 10 28872388 28872388 C T WAC Missense_Mutation p.S112L 0.14 tolerated(0.24) probably_damaging(0.977) TCGA-EE-A2MR-06 10 30611337 30611337 G A MTPAP Missense_Mutation p.S401F 0.10 tolerated(0.65) benign(0.002) TCGA-EE-A2MR-06 10 31137780 31137780 G A ZNF438 Silent p.F518F 0.08 TCGA-EE-A2MR-06 10 33196026 33196026 G A ITGB1 Intron 0.09 TCGA-EE-A2MR-06 10 33475373 33475373 C T NRP1 Silent p.K702K 0.18 TCGA-EE-A2MR-06 10 38121200 38121200 G A ZNF248 Silent p.F361F 0.48 TCGA-EE-A2MR-06 10 43601823 43601823 G A RET Splice_Site p.X290_splice 0.17 TCGA-EE-A2MR-06 10 43601965 43601965 G A RET Missense_Mutation p.E337K 0.21 deleterious(0.05) benign(0.284) TCGA-EE-A2MR-06 10 43601981 43601981 C T RET Missense_Mutation p.A342V 0.17 tolerated(0.32) benign(0.003) TCGA-EE-A2MR-06 10 43612101 43612101 G A RET Missense_Mutation p.G736R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 10 44052707 44052707 C T ZNF239 Missense_Mutation p.R274K 0.10 tolerated(0.11) probably_damaging(0.974) TCGA-EE-A2MR-06 10 44112244 44112244 C T ZNF485 Silent p.F251F 0.09 TCGA-EE-A2MR-06 10 45473456 45473456 G A C10orf10 Missense_Mutation p.S8F 0.13 deleterious(0) probably_damaging(0.919) TCGA-EE-A2MR-06 10 45487413 45487413 G A RASSF4 Missense_Mutation p.E290K 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MR-06 10 45642860 45642860 G A RP11-445N18.7 RNA 0.31 TCGA-EE-A2MR-06 10 45877970 45877970 G A ALOX5 Missense_Mutation p.E64K 0.09 deleterious(0.04) benign(0.217) TCGA-EE-A2MR-06 10 45907718 45907718 G A ALOX5 Missense_Mutation p.D171N 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2MR-06 10 46122396 46122396 G A ZFAND4 Missense_Mutation p.S292F 0.13 deleterious(0) possibly_damaging(0.723) TCGA-EE-A2MR-06 10 47909221 47909221 C T FAM21B Missense_Mutation p.S264L 0.15 tolerated(0.09) probably_damaging(0.947) TCGA-EE-A2MR-06 10 48371143 48371143 G A ZNF488 Nonsense_Mutation p.W204* 0.13 TCGA-EE-A2MR-06 10 48416352 48416352 C T GDF2 Missense_Mutation p.M114I 0.09 tolerated(0.45) benign(0.003) TCGA-EE-A2MR-06 10 48416420 48416420 G A GDF2 Silent p.L92L 0.15 TCGA-EE-A2MR-06 10 48438751 48438751 G A GDF10 5'UTR 0.18 TCGA-EE-A2MR-06 10 49459760 49459760 G A FRMPD2 Intron 0.14 TCGA-EE-A2MR-06 10 49667911 49667911 C T ARHGAP22 Missense_Mutation p.E175K 0.16 deleterious(0) benign(0.127) TCGA-EE-A2MR-06 10 50121641 50121641 A T LRRC18 Missense_Mutation p.I187K 0.19 tolerated(0.91) benign(0.014) TCGA-EE-A2MR-06 10 50227602 50227602 G A VSTM4 3'UTR 0.20 TCGA-EE-A2MR-06 10 50294062 50294062 G A VSTM4 Missense_Mutation p.S155F 0.11 tolerated(0.16) possibly_damaging(0.646) TCGA-EE-A2MR-06 10 50531867 50531867 C T C10orf71 Missense_Mutation p.A426V 0.09 tolerated(0.15) benign(0.199) TCGA-EE-A2MR-06 10 50594776 50594776 G A DRGX Silent p.P126P 0.13 TCGA-EE-A2MR-06 10 50833529 50833529 C T CHAT Missense_Mutation p.P255S 0.20 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MR-06 10 50901911 50901911 C T C10orf53 Silent p.F63F 0.11 TCGA-EE-A2MR-06 10 50960190 50960190 G A OGDHL Missense_Mutation p.R195W 0.11 deleterious(0.01) benign(0.152) TCGA-EE-A2MR-06 10 50960763 50960763 C T OGDHL Silent p.Q133Q 0.13 TCGA-EE-A2MR-06 10 51225510 51225510 G A AGAP8 Missense_Mutation p.S491F 0.07 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MR-06 10 51769545 51769545 C T AGAP6 Missense_Mutation p.P554S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 10 51808081 51808081 C A RP11-324H6.5 RNA 0.11 TCGA-EE-A2MR-06 10 51821282 51821282 G A RP11-324H6.5 RNA 0.12 TCGA-EE-A2MR-06 10 52103437 52103437 G A SGMS1 Silent p.F146F 0.13 TCGA-EE-A2MR-06 10 56089462 56089462 G A PCDH15 Missense_Mutation p.S200F 0.25 deleterious(0.05) probably_damaging(0.99) TCGA-EE-A2MR-06 10 56138562 56138562 C T PCDH15 Missense_Mutation p.G100R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 10 58117819 58117819 G A ZWINT 3'UTR 0.21 TCGA-EE-A2MR-06 10 6061852 6061852 G A IL2RA Silent p.S212S 0.17 TCGA-EE-A2MR-06 10 61083838 61083838 G A FAM13C Missense_Mutation p.S118L 0.20 tolerated_low_confidence(0.11) benign(0.011) TCGA-EE-A2MR-06 10 61112093 61112093 G A FAM13C Silent p.F87F 0.14 TCGA-EE-A2MR-06 10 61946494 61946494 C T ANK3 Silent p.A688A 0.16 TCGA-EE-A2MR-06 10 6258674 6258674 C T PFKFB3 Silent p.F124F 0.19 TCGA-EE-A2MR-06 10 63212632 63212632 T A TMEM26 Intron 0.11 TCGA-EE-A2MR-06 10 6527202 6527202 G A PRKCQ Silent p.I310I 0.15 TCGA-EE-A2MR-06 10 6527997 6527997 C T PRKCQ Silent p.Q300Q 0.13 TCGA-EE-A2MR-06 10 69565524 69565524 C A DNAJC12 Missense_Mutation p.G107C 0.14 deleterious(0.04) possibly_damaging(0.469) TCGA-EE-A2MR-06 10 69957191 69957191 G A MYPN Missense_Mutation p.D1081N 0.11 deleterious(0.04) probably_damaging(0.974) TCGA-EE-A2MR-06 10 70263427 70263427 G A SLC25A16 Missense_Mutation p.S128L 0.18 tolerated(0.13) benign(0.232) TCGA-EE-A2MR-06 10 70502258 70502258 C T CCAR1 Silent p.F150F 0.12 TCGA-EE-A2MR-06 10 70730013 70730013 C T DDX21 Silent p.I431I 0.10 TCGA-EE-A2MR-06 10 71265942 71265942 C T TSPAN15 Silent p.F227F 0.08 TCGA-EE-A2MR-06 10 72468481 72468481 C T ADAMTS14 Missense_Mutation p.R273C 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 10 73511582 73511582 G A C10orf54 Silent p.A247A 0.11 TCGA-EE-A2MR-06 10 75082833 75082833 G A TTC18 Missense_Mutation p.S337L 0.09 deleterious(0.04) possibly_damaging(0.815) TCGA-EE-A2MR-06 10 75186374 75186374 G A MSS51 Silent p.L165L 0.06 TCGA-EE-A2MR-06 10 75239252 75239252 G A PPP3CB Missense_Mutation p.R37C 0.18 tolerated(0.12) benign(0.028) TCGA-EE-A2MR-06 10 75283383 75283383 G A USP54 Missense_Mutation p.H774Y 0.09 deleterious(0.01) benign(0.316) TCGA-EE-A2MR-06 10 79777367 79777367 G A POLR3A Missense_Mutation p.P466L 0.16 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 10 81058166 81058166 C T ZMIZ1 Missense_Mutation p.P499S 0.13 benign(0.001) TCGA-EE-A2MR-06 10 8115874 8115874 C T GATA3 Missense_Mutation p.S408L 0.10 tolerated(0.37) benign(0.386) TCGA-EE-A2MR-06 10 82033635 82033635 A C MAT1A Missense_Mutation p.L364V 0.09 deleterious(0) possibly_damaging(0.867) TCGA-EE-A2MR-06 10 86008712 86008712 C T RGR Missense_Mutation p.H95Y 0.08 tolerated(0.12) possibly_damaging(0.868) TCGA-EE-A2MR-06 10 86018296 86018296 G A RGR Silent p.T263T 0.10 TCGA-EE-A2MR-06 10 87966204 87966204 G A GRID1 Missense_Mutation p.P146L 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MR-06 10 88466428 88466428 C T LDB3 Intron 0.13 TCGA-EE-A2MR-06 10 88466429 88466429 C T LDB3 Intron 0.13 TCGA-EE-A2MR-06 10 88702255 88702255 C T MMRN2 Missense_Mutation p.M762I 0.08 tolerated(0.18) benign(0.002) TCGA-EE-A2MR-06 10 88768968 88768968 C T RP11-96C23.10 3'Flank 0.10 TCGA-EE-A2MR-06 10 88769151 88769151 G A RP11-96C23.10 3'Flank 0.06 TCGA-EE-A2MR-06 10 88769359 88769359 C T RP11-96C23.10 3'Flank 0.08 TCGA-EE-A2MR-06 10 90427414 90427414 C A LIPF Missense_Mutation p.P75H 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 10 90438337 90438337 G A LIPF Missense_Mutation p.E376K 0.10 tolerated(0.4) benign(0.002) TCGA-EE-A2MR-06 10 90582732 90582732 G A ANKRD22 Missense_Mutation p.S181F 0.10 tolerated(0.71) benign(0.009) TCGA-EE-A2MR-06 10 90588416 90588416 C T ANKRD22 Missense_Mutation p.R74K 0.14 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A2MR-06 10 90773985 90773985 C T FAS Silent p.I262I 0.12 TCGA-EE-A2MR-06 10 91098435 91098435 C T IFIT3 Missense_Mutation p.S8F 0.18 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MR-06 10 93030 93030 C T TUBB8 Silent p.E434E 0.09 TCGA-EE-A2MR-06 10 93773697 93773697 T A BTAF1 Missense_Mutation p.F1499I 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 10 94396969 94396969 C T KIF11 Missense_Mutation p.S635L 0.11 tolerated(0.32) benign(0.028) TCGA-EE-A2MR-06 10 94410215 94410215 G A KIF11 Missense_Mutation p.E994K 0.08 tolerated(0.47) benign(0.004) TCGA-EE-A2MR-06 10 94733976 94733976 T G EXOC6 Missense_Mutation p.F647C 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MR-06 10 95552500 95552500 G A LGI1 Silent p.V168V 0.15 TCGA-EE-A2MR-06 10 96612516 96612516 C T CYP2C19 Silent p.L440L 0.22 TCGA-EE-A2MR-06 10 97443350 97443350 G A TCTN3 Missense_Mutation p.P378S 0.10 deleterious(0.05) benign(0.082) TCGA-EE-A2MR-06 10 97917640 97917640 C T ZNF518A RNA 0.11 TCGA-EE-A2MR-06 10 98079090 98079090 C T DNTT Silent p.I150I 0.14 TCGA-EE-A2MR-06 10 98803137 98803137 G A SLIT1 Missense_Mutation p.L663F 0.08 deleterious(0) possibly_damaging(0.874) TCGA-EE-A2MR-06 10 98819908 98819908 C T SLIT1 Missense_Mutation p.E317K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 10 99139496 99139496 G A RRP12 Missense_Mutation p.S522F 0.23 deleterious(0) benign(0.241) TCGA-EE-A2MR-06 10 99517446 99517446 C T ZFYVE27 Silent p.S384S 0.20 TCGA-EE-A2MR-06 11 1010583 1010583 C T AP2A2 Silent p.A926A 0.27 TCGA-EE-A2MR-06 11 102398512 102398512 C T MMP7 Nonsense_Mutation p.W104* 0.13 TCGA-EE-A2MR-06 11 103907695 103907695 C T DDI1 Missense_Mutation p.H49Y 0.08 tolerated(1) benign(0.004) TCGA-EE-A2MR-06 11 10546848 10546848 C G RNF141 Missense_Mutation p.D109H 0.08 deleterious(0) probably_damaging(0.942) TCGA-EE-A2MR-06 11 10602036 10602036 C T MRVI1 Missense_Mutation p.E821K 0.08 tolerated(0.15) benign(0.197) TCGA-EE-A2MR-06 11 10648002 10648002 G A MRVI1 Silent p.F293F 0.12 TCGA-EE-A2MR-06 11 10778311 10778311 C T CTR9 Missense_Mutation p.S173F 0.11 tolerated(0.12) benign(0.006) TCGA-EE-A2MR-06 11 10823088 10823088 G A EIF4G2 Intron 0.08 TCGA-EE-A2MR-06 11 108380257 108380257 A G EXPH5 3'UTR 0.11 TCGA-EE-A2MR-06 11 1097275 1097275 G A MUC2 Missense_Mutation p.E2231K 0.10 unknown(0) TCGA-EE-A2MR-06 11 1098761 1098761 C T MUC2 Silent p.A2377A 0.33 TCGA-EE-A2MR-06 11 111155025 111155025 G A C11orf53 Missense_Mutation p.G78S 0.15 tolerated(1) benign(0.058) TCGA-EE-A2MR-06 11 112070449 112070449 C T BCO2 Missense_Mutation p.P255L 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 11 113287661 113287661 G A DRD2 Silent p.V152V 0.13 TCGA-EE-A2MR-06 11 113610103 113610103 C A ZW10 Nonsense_Mutation p.E529* 0.09 TCGA-EE-A2MR-06 11 113856862 113856862 G A HTR3A Missense_Mutation p.E230K 0.07 tolerated(0.33) benign(0.041) TCGA-EE-A2MR-06 11 113857312 113857312 G A HTR3A Missense_Mutation p.D266N 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 11 116649654 116649654 G A ZNF259 Missense_Mutation p.A456V 0.10 deleterious_low_confidence(0.05) benign(0.002) TCGA-EE-A2MR-06 11 116693935 116693935 T C APOA4 5'UTR 0.08 TCGA-EE-A2MR-06 11 116730317 116730317 G A SIK3 Missense_Mutation p.A704V 0.09 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-EE-A2MR-06 11 117335656 117335656 A T DSCAML1 Splice_Site p.X1149_splice 0.09 TCGA-EE-A2MR-06 11 117973909 117973909 C T TMPRSS4 Missense_Mutation p.P84L 0.08 tolerated(0.63) benign(0.001) TCGA-EE-A2MR-06 11 117973950 117973950 G A TMPRSS4 Missense_Mutation p.E98K 0.11 tolerated(0.13) benign(0.102) TCGA-EE-A2MR-06 11 118209930 118209930 G A CD3D Nonsense_Mutation p.R155* 0.12 TCGA-EE-A2MR-06 11 118375975 118375975 C T KMT2A Missense_Mutation p.S3123L 0.09 probably_damaging(0.918) TCGA-EE-A2MR-06 11 118963727 118963727 C T HMBS Missense_Mutation p.A303V 0.11 tolerated(0.37) benign(0.008) TCGA-EE-A2MR-06 11 119060201 119060201 G A PDZD3 Silent p.%3D 0.12 TCGA-EE-A2MR-06 11 119205806 119205806 T C RNF26 5'UTR 0.12 TCGA-EE-A2MR-06 11 119983115 119983115 C T TRIM29 3'UTR 0.13 TCGA-EE-A2MR-06 11 122666886 122666886 C T UBASH3B Missense_Mutation p.P379L 0.17 tolerated(0.27) benign(0.081) TCGA-EE-A2MR-06 11 122756840 122756840 A G C11orf63 Missense_Mutation p.K95E 0.09 tolerated(0.33) benign(0.045) TCGA-EE-A2MR-06 11 123810752 123810752 C T OR4D5 Silent p.L143L 0.08 TCGA-EE-A2MR-06 11 123811173 123811173 C T OR4D5 Missense_Mutation p.P284S 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 11 123814091 123814091 C T OR6T1 Missense_Mutation p.G152E 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 11 123814360 123814360 G A OR6T1 Silent p.F62F 0.13 TCGA-EE-A2MR-06 11 123909254 123909254 G A OR10G7 Missense_Mutation p.S152F 0.09 tolerated(0.22) possibly_damaging(0.878) TCGA-EE-A2MR-06 11 124005659 124005659 C T VWA5A Missense_Mutation p.S426F 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 11 124005660 124005660 C T VWA5A Silent p.S426S 0.22 TCGA-EE-A2MR-06 11 124266685 124266685 G A OR8B3 Missense_Mutation p.S188F 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MR-06 11 124413072 124413072 C T OR8B12 Missense_Mutation p.G160E 0.21 deleterious_low_confidence(0.01) benign(0.151) TCGA-EE-A2MR-06 11 124750327 124750327 C T ROBO3 Silent p.L1324L 0.21 TCGA-EE-A2MR-06 11 124756538 124756538 G A ROBO4 Silent p.S872S 0.21 TCGA-EE-A2MR-06 11 125547731 125547731 C G ACRV1 Missense_Mutation p.E172Q 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A2MR-06 11 125547733 125547733 C T ACRV1 Missense_Mutation p.G171E 0.20 deleterious(0.04) possibly_damaging(0.853) TCGA-EE-A2MR-06 11 126081442 126081442 A T RPUSD4 Missense_Mutation p.F31Y 0.08 tolerated_low_confidence(0.14) possibly_damaging(0.581) TCGA-EE-A2MR-06 11 1269216 1269216 G A MUC5B Silent p.T3702T 0.09 TCGA-EE-A2MR-06 11 128680798 128680798 C T FLI1 Missense_Mutation p.S425F 0.09 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MR-06 11 128781871 128781871 C T KCNJ5 Missense_Mutation p.R235W 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 129246117 129246117 G A BARX2 Missense_Mutation p.G63S 0.06 tolerated(0.08) probably_damaging(0.929) TCGA-EE-A2MR-06 11 129999051 129999051 C T APLP2 Missense_Mutation p.R469W 0.09 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MR-06 11 129999953 129999953 C T APLP2 Silent p.A492A 0.15 TCGA-EE-A2MR-06 11 132527177 132527177 G A OPCML Silent p.L69L 0.15 TCGA-EE-A2MR-06 11 133807326 133807326 G A IGSF9B Silent p.C208C 0.14 TCGA-EE-A2MR-06 11 13466629 13466629 G A BTBD10 Missense_Mutation p.P15S 0.10 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A2MR-06 11 14317411 14317411 A G RRAS2 Intron 0.11 TCGA-EE-A2MR-06 11 1466554 1466554 G A BRSK2 Silent p.Q327Q 0.22 TCGA-EE-A2MR-06 11 1492538 1492538 G A MOB2 Silent p.F159F 0.30 TCGA-EE-A2MR-06 11 16822587 16822587 C T PLEKHA7 Silent p.L781L 0.12 TCGA-EE-A2MR-06 11 17409006 17409006 G A KCNJ11 Silent p.I211I 0.09 TCGA-EE-A2MR-06 11 17417237 17417237 G A ABCC8 Silent p.I1409I 0.09 TCGA-EE-A2MR-06 11 17418802 17418802 C T ABCC8 Missense_Mutation p.G1309E 0.14 deleterious(0.01) benign(0.017) TCGA-EE-A2MR-06 11 17449875 17449875 G A ABCC8 Silent p.V667V 0.07 TCGA-EE-A2MR-06 11 17482217 17482217 C T ABCC8 Missense_Mutation p.D277N 0.18 tolerated(0.51) benign(0.021) TCGA-EE-A2MR-06 11 17757680 17757680 G A KCNC1 Missense_Mutation p.S44N 0.12 tolerated(0.29) benign(0.036) TCGA-EE-A2MR-06 11 18042519 18042519 C T TPH1 3'UTR 0.08 TCGA-EE-A2MR-06 11 18159340 18159340 C T MRGPRX3 Silent p.V197V 0.13 TCGA-EE-A2MR-06 11 18194861 18194861 G A MRGPRX4 Missense_Mutation p.E20K 0.13 tolerated(0.37) benign(0.005) TCGA-EE-A2MR-06 11 18195506 18195506 C T MRGPRX4 Silent p.L235L 0.13 TCGA-EE-A2MR-06 11 18500465 18500465 G A LDHAL6A 3'UTR 0.08 TCGA-EE-A2MR-06 11 18636190 18636190 G A SPTY2D1 Missense_Mutation p.S544F 0.14 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MR-06 11 18955477 18955477 C T MRGPRX1 Silent p.Q285Q 0.08 TCGA-EE-A2MR-06 11 18956061 18956061 G A MRGPRX1 Missense_Mutation p.P91S 0.06 tolerated(0.41) benign(0) TCGA-EE-A2MR-06 11 18956158 18956158 C T MRGPRX1 Silent p.R58R 0.06 TCGA-EE-A2MR-06 11 19209754 19209754 C T CSRP3 Silent p.G70G 0.09 TCGA-EE-A2MR-06 11 19209755 19209755 C T CSRP3 Missense_Mutation p.G70E 0.09 deleterious(0) probably_damaging(0.918) TCGA-EE-A2MR-06 11 1944290 1944290 G A TNNT3 Silent p.E10E 0.06 TCGA-EE-A2MR-06 11 20113831 20113831 C T NAV2 Missense_Mutation p.S1970F 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MR-06 11 22291893 22291893 G A ANO5 Missense_Mutation p.R645Q 0.20 tolerated(0.1) benign(0.421) TCGA-EE-A2MR-06 11 2424185 2424185 C T TSSC4 Missense_Mutation p.P108S 0.14 tolerated(0.11) benign(0.056) TCGA-EE-A2MR-06 11 2429124 2429124 G A TRPM5 Missense_Mutation p.S934F 0.15 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MR-06 11 2429138 2429138 G A TRPM5 Silent p.A929A 0.08 TCGA-EE-A2MR-06 11 2439451 2439451 C T TRPM5 Silent p.E284E 0.07 TCGA-EE-A2MR-06 11 2549161 2549161 C T KCNQ1 Silent p.F130F 0.07 TCGA-EE-A2MR-06 11 27016166 27016166 G A FIBIN Silent p.G31G 0.15 TCGA-EE-A2MR-06 11 2798227 2798227 C T KCNQ1 Missense_Mutation p.S566F 0.07 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2MR-06 11 2940591 2940591 C T SLC22A18 Missense_Mutation p.A273V 0.14 deleterious(0.03) probably_damaging(0.968) TCGA-EE-A2MR-06 11 30974044 30974044 C T DCDC1 Nonsense_Mutation p.W888* 0.25 TCGA-EE-A2MR-06 11 32956541 32956541 C T QSER1 Missense_Mutation p.S1117F 0.08 tolerated(0.55) benign(0.149) TCGA-EE-A2MR-06 11 34104504 34104504 T G CAPRIN1 Nonsense_Mutation p.Y294* 0.15 TCGA-EE-A2MR-06 11 3430027 3430027 C T TSSC2 RNA 0.12 TCGA-EE-A2MR-06 11 35461220 35461220 G A PAMR1 Missense_Mutation p.S369L 0.12 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A2MR-06 11 3661490 3661490 C T ART5 Missense_Mutation p.E57K 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 36615118 36615118 G A RAG2 Nonsense_Mutation p.Q201* 0.11 TCGA-EE-A2MR-06 11 379966 379966 C T B4GALNT4 Silent p.F863F 0.13 TCGA-EE-A2MR-06 11 4388715 4388715 G A OR52B4 Missense_Mutation p.P271S 0.27 tolerated(0.12) benign(0.07) TCGA-EE-A2MR-06 11 43904190 43904190 C T ALKBH3 5'UTR 0.11 TCGA-EE-A2MR-06 11 44105088 44105088 C T ACCS Missense_Mutation p.R457C 0.11 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MR-06 11 44956372 44956372 G A TP53I11 3'UTR 0.20 TCGA-EE-A2MR-06 11 45241245 45241245 G A PRDM11 Missense_Mutation p.E227K 0.15 deleterious(0.04) benign(0.008) TCGA-EE-A2MR-06 11 45671132 45671132 G A CHST1 3'UTR 0.19 TCGA-EE-A2MR-06 11 45671422 45671422 C T CHST1 Missense_Mutation p.R351Q 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 45891727 45891727 C T CRY2 Missense_Mutation p.R461C 0.16 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MR-06 11 45919642 45919642 C A MAPK8IP1 Silent p.T36T 0.16 TCGA-EE-A2MR-06 11 45919643 45919643 C T MAPK8IP1 Missense_Mutation p.H37Y 0.16 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MR-06 11 45945067 45945067 G A GYLTL1B Missense_Mutation p.R110Q 0.12 tolerated(0.07) possibly_damaging(0.581) TCGA-EE-A2MR-06 11 45949844 45949844 G A GYLTL1B Missense_Mutation p.R624Q 0.08 deleterious(0.02) possibly_damaging(0.529) TCGA-EE-A2MR-06 11 4608958 4608958 C T OR52I2 Silent p.L306L 0.12 TCGA-EE-A2MR-06 11 4621926 4621926 G A TRIM68 Silent p.I346I 0.21 TCGA-EE-A2MR-06 11 46406977 46406977 G A CHRM4 Silent p.F377F 0.09 TCGA-EE-A2MR-06 11 46564525 46564525 G A AMBRA1 Missense_Mutation p.P258S 0.20 deleterious_low_confidence(0.01) benign(0.359) TCGA-EE-A2MR-06 11 46723068 46723068 C T ZNF408 Missense_Mutation p.P58S 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 11 46771899 46771899 G A CKAP5 Nonsense_Mutation p.Q1877* 0.17 TCGA-EE-A2MR-06 11 46898295 46898295 C T LRP4 Missense_Mutation p.G1122R 0.10 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A2MR-06 11 46920971 46920971 C T LRP4 Missense_Mutation p.D172N 0.12 tolerated(0.06) possibly_damaging(0.894) TCGA-EE-A2MR-06 11 48238638 48238638 G A OR4B1 Missense_Mutation p.E93K 0.12 tolerated(0.88) benign(0.002) TCGA-EE-A2MR-06 11 48328235 48328235 C T OR4S1 Missense_Mutation p.S154F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 11 4903171 4903171 C T OR51T1 Silent p.F41F 0.21 TCGA-EE-A2MR-06 11 4929304 4929304 G A OR51A7 Silent p.K235K 0.19 TCGA-EE-A2MR-06 11 49974046 49974046 C T OR4C13 Silent p.I24I 0.11 TCGA-EE-A2MR-06 11 49974457 49974457 C T OR4C13 Silent p.I161I 0.14 TCGA-EE-A2MR-06 11 5247977 5247977 G A HBB Silent p.L49L 0.09 TCGA-EE-A2MR-06 11 5443745 5443745 C T OR51Q1 Silent p.F105F 0.10 TCGA-EE-A2MR-06 11 5529462 5529462 C T UBQLN3 Missense_Mutation p.D443N 0.10 tolerated(0.33) benign(0.079) TCGA-EE-A2MR-06 11 5529719 5529719 C T UBQLN3 Missense_Mutation p.G357E 0.08 tolerated(0.09) benign(0.194) TCGA-EE-A2MR-06 11 5530148 5530148 G A UBQLN3 Missense_Mutation p.P214L 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 55322195 55322195 C T OR4C15 Missense_Mutation p.S138F 0.18 tolerated_low_confidence(0.22) probably_damaging(0.999) TCGA-EE-A2MR-06 11 5536668 5536668 C T UBQLNL Missense_Mutation p.S335N 0.10 tolerated(0.31) benign(0.011) TCGA-EE-A2MR-06 11 5537318 5537318 C T UBQLNL Silent p.T118T 0.11 TCGA-EE-A2MR-06 11 55579077 55579077 G A OR5L1 Missense_Mutation p.M45I 0.08 tolerated(0.06) benign(0.016) TCGA-EE-A2MR-06 11 55798437 55798437 C T OR5AS1 Silent p.I181I 0.17 TCGA-EE-A2MR-06 11 56000149 56000149 A G OR5T2 Silent p.Y171Y 0.12 TCGA-EE-A2MR-06 11 56020129 56020129 C T OR5T3 Missense_Mutation p.H152Y 0.10 deleterious(0.02) benign(0.002) TCGA-EE-A2MR-06 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.19 deleterious(0.02) benign(0.181) TCGA-EE-A2MR-06 11 56258333 56258333 C T OR5M8 Missense_Mutation p.E172K 0.11 tolerated(0.79) benign(0.033) TCGA-EE-A2MR-06 11 56344324 56344324 G A OR5M10 Silent p.L292L 0.08 TCGA-EE-A2MR-06 11 56409013 56409013 C T OR5AP2 Silent p.K301K 0.12 TCGA-EE-A2MR-06 11 56510346 56510346 C T OR9G4 Silent p.E314E 0.09 TCGA-EE-A2MR-06 11 5664955 5664955 C T TRIM34 3'UTR 0.08 TCGA-EE-A2MR-06 11 56757090 56757090 G A OR5AK2 Silent p.R234R 0.20 TCGA-EE-A2MR-06 11 57003251 57003251 G A APLNR 3'UTR 0.24 TCGA-EE-A2MR-06 11 57310494 57310494 G A SMTNL1 Missense_Mutation p.E145K 0.40 tolerated(0.17) benign(0.272) TCGA-EE-A2MR-06 11 57322016 57322016 G A UBE2L6 Silent p.I68I 0.08 TCGA-EE-A2MR-06 11 57381808 57381808 C T SERPING1 Silent p.F419F 0.15 TCGA-EE-A2MR-06 11 57381988 57381988 C T SERPING1 Silent p.F479F 0.16 TCGA-EE-A2MR-06 11 5776069 5776069 C T OR52N4 Silent p.F33F 0.25 TCGA-EE-A2MR-06 11 57947582 57947582 C T OR9Q1 Silent p.I222I 0.17 TCGA-EE-A2MR-06 11 57982297 57982297 C T OR1S1 Silent p.L27L 0.12 TCGA-EE-A2MR-06 11 58034437 58034437 C T OR10W1 Silent p.R298R 0.09 TCGA-EE-A2MR-06 11 5842231 5842231 G A OR52N2 Missense_Mutation p.M222I 0.12 deleterious(0.02) benign(0.062) TCGA-EE-A2MR-06 11 58978763 58978763 C A MPEG1 Missense_Mutation p.V526F 0.32 deleterious(0) possibly_damaging(0.846) TCGA-EE-A2MR-06 11 58978764 58978764 C T MPEG1 Silent p.A525A 0.32 TCGA-EE-A2MR-06 11 58978900 58978900 C T MPEG1 Missense_Mutation p.G480E 0.10 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MR-06 11 59211505 59211505 G A OR5A1 Silent p.L288L 0.11 TCGA-EE-A2MR-06 11 59224871 59224871 G A OR4D6 Silent p.V146V 0.18 TCGA-EE-A2MR-06 11 59245655 59245655 C T OR4D10 Silent p.F251F 0.19 TCGA-EE-A2MR-06 11 6008161 6008161 G A OR52L1 5'UTR 0.23 TCGA-EE-A2MR-06 11 60105276 60105276 C T MS4A6E Silent p.L70L 0.08 TCGA-EE-A2MR-06 11 60264994 60264994 G A MS4A12 Missense_Mutation p.G68E 0.19 tolerated(0.58) benign(0.036) TCGA-EE-A2MR-06 11 605145 605145 C T PHRF1 Silent p.I393I 0.17 TCGA-EE-A2MR-06 11 60609702 60609702 C T CCDC86 Silent p.F35F 0.21 TCGA-EE-A2MR-06 11 60615435 60615435 C T CCDC86 Missense_Mutation p.S266L 0.21 deleterious(0) possibly_damaging(0.814) TCGA-EE-A2MR-06 11 60637241 60637241 G A ZP1 Missense_Mutation p.D184N 0.14 tolerated(0.59) benign(0.023) TCGA-EE-A2MR-06 11 60699339 60699339 C T TMEM132A Missense_Mutation p.L400F 0.12 tolerated(0.05) possibly_damaging(0.828) TCGA-EE-A2MR-06 11 60777262 60777262 G A CD6 Missense_Mutation p.E334K 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MR-06 11 61018652 61018652 G A PGA5 Missense_Mutation p.E356K 0.07 tolerated(0.59) benign(0.004) TCGA-EE-A2MR-06 11 61249255 61249255 C T RP11-286N22.8 Missense_Mutation p.P144S 0.27 tolerated_low_confidence(0.62) benign(0) TCGA-EE-A2MR-06 11 61250266 61250266 C T PPP1R32 Missense_Mutation p.P123S 0.32 deleterious(0.04) benign(0.021) TCGA-EE-A2MR-06 11 61404485 61404485 C T RPLP0P2 RNA 0.19 TCGA-EE-A2MR-06 11 61672311 61672311 G A RAB3IL1 Missense_Mutation p.S234F 0.11 deleterious(0) possibly_damaging(0.519) TCGA-EE-A2MR-06 11 61897294 61897294 C A INCENP Silent p.R99R 0.25 TCGA-EE-A2MR-06 11 61906362 61906362 C T INCENP Silent p.V392V 0.07 TCGA-EE-A2MR-06 11 619080 619080 C T CDHR5 Silent p.T493T 0.21 TCGA-EE-A2MR-06 11 62295955 62295955 C T AHNAK Silent p.K1978K 0.08 TCGA-EE-A2MR-06 11 62300404 62300404 A T AHNAK Silent p.I495I 0.14 TCGA-EE-A2MR-06 11 62373637 62373637 G A EML3 Silent p.F518F 0.10 TCGA-EE-A2MR-06 11 62376927 62376927 G A EML3 Silent p.F219F 0.19 TCGA-EE-A2MR-06 11 62430563 62430563 G A C11orf48 3'UTR 0.25 TCGA-EE-A2MR-06 11 62458830 62458830 G A BSCL2 Silent p.F309F 0.07 TCGA-EE-A2MR-06 11 62677792 62677792 G A CHRM1 Missense_Mutation p.R261C 0.10 tolerated(0.05) benign(0) TCGA-EE-A2MR-06 11 62760937 62760937 C T SLC22A8 Silent p.L496L 0.16 TCGA-EE-A2MR-06 11 62761058 62761058 C T SLC22A8 Missense_Mutation p.G456E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 63069894 63069894 C T SLC22A10 Silent p.V388V 0.24 TCGA-EE-A2MR-06 11 63078567 63078567 G A SLC22A10 3'UTR 0.32 TCGA-EE-A2MR-06 11 63276445 63276445 C T LGALS12 Silent p.F141F 0.24 TCGA-EE-A2MR-06 11 63679817 63679817 C T RCOR2 Missense_Mutation p.G406E 0.08 tolerated(0.24) unknown(0) TCGA-EE-A2MR-06 11 63743713 63743713 T C COX8A Missense_Mutation p.L44P 0.11 deleterious(0) possibly_damaging(0.536) TCGA-EE-A2MR-06 11 63883944 63883944 G A FLRT1 Missense_Mutation p.D69N 0.17 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 11 63979141 63979141 C T FERMT3 Silent p.L236L 0.15 TCGA-EE-A2MR-06 11 64056797 64056797 C T GPR137 Missense_Mutation p.P463L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-EE-A2MR-06 11 64108130 64108130 G A CCDC88B Missense_Mutation p.E38K 0.08 tolerated(0.28) probably_damaging(0.957) TCGA-EE-A2MR-06 11 6415775 6415775 C T SMPD1 Silent p.L612L 0.13 TCGA-EE-A2MR-06 11 64518906 64518906 G A PYGM Silent p.I620I 0.16 TCGA-EE-A2MR-06 11 64594866 64594866 C A CDC42BPG Missense_Mutation p.K1385N 0.13 tolerated(0.12) probably_damaging(0.997) TCGA-EE-A2MR-06 11 64603664 64603664 C T CDC42BPG Silent p.E531E 0.23 TCGA-EE-A2MR-06 11 64604419 64604419 C T CDC42BPG Silent p.K426K 0.10 TCGA-EE-A2MR-06 11 64678345 64678345 G A ATG2A Silent p.H516H 0.25 TCGA-EE-A2MR-06 11 64678708 64678708 G A ATG2A Missense_Mutation p.P423L 0.13 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MR-06 11 65061632 65061632 C T POLA2 Missense_Mutation p.S418F 0.07 deleterious(0.02) benign(0.048) TCGA-EE-A2MR-06 11 65119203 65119203 C T DPF2 Silent p.S383S 0.11 TCGA-EE-A2MR-06 11 65124131 65124131 C T TIGD3 Silent p.L284L 0.09 TCGA-EE-A2MR-06 11 65124657 65124657 G A TIGD3 Missense_Mutation p.D460N 0.16 tolerated(0.49) benign(0.045) TCGA-EE-A2MR-06 11 65144347 65144347 G A SLC25A45 Silent p.I180I 0.09 TCGA-EE-A2MR-06 11 65358037 65358037 C T EHBP1L1 Silent p.I1419I 0.15 TCGA-EE-A2MR-06 11 65385973 65385973 C T PCNXL3 Silent p.V380V 0.25 TCGA-EE-A2MR-06 11 65396321 65396321 C T PCNXL3 Silent p.L1281L 0.10 TCGA-EE-A2MR-06 11 65402493 65402493 C T PCNXL3 Missense_Mutation p.R1619C 0.26 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 11 65561597 65561597 C T OVOL1 Nonsense_Mutation p.R66* 0.12 TCGA-EE-A2MR-06 11 65562167 65562167 C T OVOL1 Silent p.F159F 0.14 TCGA-EE-A2MR-06 11 65562600 65562600 G A OVOL1 Missense_Mutation p.G198S 0.10 tolerated(0.19) probably_damaging(0.998) TCGA-EE-A2MR-06 11 65638023 65638023 G A EFEMP2 Silent p.I158I 0.16 TCGA-EE-A2MR-06 11 65726390 65726390 G A SART1 5'Flank 0.11 TCGA-EE-A2MR-06 11 65780393 65780393 T C CST6 Missense_Mutation p.C113R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 65826745 65826745 C T SF3B2 Missense_Mutation p.P419L 0.15 tolerated(0.29) benign(0.007) TCGA-EE-A2MR-06 11 65826746 65826746 C T SF3B2 Silent p.P419P 0.16 TCGA-EE-A2MR-06 11 65978611 65978611 C T PACS1 Missense_Mutation p.H181Y 0.09 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MR-06 11 65988626 65988626 C T PACS1 Missense_Mutation p.P401S 0.22 deleterious(0.03) possibly_damaging(0.53) TCGA-EE-A2MR-06 11 66191868 66191868 C T NPAS4 Missense_Mutation p.P503S 0.14 deleterious_low_confidence(0.03) benign(0.129) TCGA-EE-A2MR-06 11 66191869 66191869 C T NPAS4 Missense_Mutation p.P503L 0.14 deleterious_low_confidence(0.01) benign(0.255) TCGA-EE-A2MR-06 11 66330650 66330650 G A CTSF 3'Flank 0.19 TCGA-EE-A2MR-06 11 66460820 66460820 G A SPTBN2 Missense_Mutation p.A1564V 0.17 tolerated(0.26) benign(0.378) TCGA-EE-A2MR-06 11 66802235 66802235 T A SYT12 Missense_Mutation p.S52T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EE-A2MR-06 11 66807446 66807446 C T SYT12 Silent p.S131S 0.11 TCGA-EE-A2MR-06 11 67012810 67012810 C T KDM2A Nonsense_Mutation p.R572* 0.22 TCGA-EE-A2MR-06 11 67067323 67067323 C T ANKRD13D Silent p.F302F 0.15 TCGA-EE-A2MR-06 11 67287310 67287310 G A CABP2 Silent p.I197I 0.16 TCGA-EE-A2MR-06 11 67395635 67395635 G A NUDT8 Missense_Mutation p.R165C 0.14 tolerated(0.05) benign(0.006) TCGA-EE-A2MR-06 11 67395636 67395636 G A NUDT8 Silent p.F164F 0.15 TCGA-EE-A2MR-06 11 67400524 67400524 G A TBX10 Silent p.F200F 0.15 TCGA-EE-A2MR-06 11 67433035 67433035 C T ALDH3B2 Missense_Mutation p.D143N 0.08 tolerated(0.13) benign(0.076) TCGA-EE-A2MR-06 11 68115558 68115558 G A LRP5 Missense_Mutation p.G112D 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 11 68154022 68154022 C T LRP5 Silent p.P418P 0.11 TCGA-EE-A2MR-06 11 68177503 68177503 G A LRP5 Missense_Mutation p.G738E 0.10 tolerated(0.19) probably_damaging(0.993) TCGA-EE-A2MR-06 11 68216592 68216592 G A LRP5 3'UTR 0.33 TCGA-EE-A2MR-06 11 68852754 68852754 G A TPCN2 Missense_Mutation p.S613N 0.09 deleterious(0.05) possibly_damaging(0.67) TCGA-EE-A2MR-06 11 70331667 70331667 G A SHANK2 Silent p.I1578I 0.12 TCGA-EE-A2MR-06 11 70333466 70333466 G A SHANK2 Missense_Mutation p.R979C 0.11 deleterious(0) possibly_damaging(0.721) TCGA-EE-A2MR-06 11 7063691 7063691 G A NLRP14 Missense_Mutation p.G145E 0.11 deleterious(0.04) probably_damaging(0.911) TCGA-EE-A2MR-06 11 7110456 7110456 C T RBMXL2 Silent p.V35V 0.27 TCGA-EE-A2MR-06 11 7111135 7111135 G A RBMXL2 Missense_Mutation p.G262S 0.19 tolerated(0.13) possibly_damaging(0.862) TCGA-EE-A2MR-06 11 71293788 71293788 G A KRTAP5-11 Silent p.G32G 0.11 TCGA-EE-A2MR-06 11 72295921 72295921 C T PDE2A Missense_Mutation p.D452N 0.09 tolerated(0.15) benign(0.034) TCGA-EE-A2MR-06 11 72404816 72404816 G A ARAP1 Silent p.P1243P 0.16 TCGA-EE-A2MR-06 11 72551959 72551959 C T FCHSD2 Missense_Mutation p.R701K 0.06 tolerated(0.19) benign(0.182) TCGA-EE-A2MR-06 11 72945846 72945846 C T P2RY2 Silent p.I214I 0.14 TCGA-EE-A2MR-06 11 75298625 75298625 G A MAP6 Missense_Mutation p.P641S 0.10 tolerated_low_confidence(0.1) benign(0.343) TCGA-EE-A2MR-06 11 75439132 75439132 C T MOGAT2 Missense_Mutation p.S198F 0.10 deleterious(0.02) possibly_damaging(0.537) TCGA-EE-A2MR-06 11 76867915 76867915 G A MYO7A Silent p.G200G 0.11 TCGA-EE-A2MR-06 11 78380476 78380476 C T TENM4 Missense_Mutation p.S2305N 0.09 tolerated(0.29) benign(0.007) TCGA-EE-A2MR-06 11 8008878 8008878 C T EIF3F 5'UTR 0.08 TCGA-EE-A2MR-06 11 8008893 8008893 C T EIF3F 5'UTR 0.07 TCGA-EE-A2MR-06 11 84027956 84027956 C T DLG2 Intron 0.10 TCGA-EE-A2MR-06 11 8706416 8706416 C T RPL27A Missense_Mutation p.P99S 0.18 deleterious(0.03) benign(0.112) TCGA-EE-A2MR-06 11 88033707 88033707 G A CTSC Nonsense_Mutation p.R250* 0.14 TCGA-EE-A2MR-06 11 88780812 88780812 C T GRM5 Missense_Mutation p.E77K 0.25 deleterious(0.05) benign(0.174) TCGA-EE-A2MR-06 11 9069588 9069588 C T SCUBE2 Missense_Mutation p.G566D 0.06 tolerated(0.09) benign(0.018) TCGA-EE-A2MR-06 11 9077350 9077350 G A SCUBE2 Silent p.T399T 0.13 TCGA-EE-A2MR-06 11 92257900 92257900 C T FAT3 Silent p.T1131T 0.07 TCGA-EE-A2MR-06 11 92258027 92258027 G A FAT3 Missense_Mutation p.D1174N 0.10 probably_damaging(1) TCGA-EE-A2MR-06 11 92531011 92531011 G A FAT3 Missense_Mutation p.G1611E 0.14 probably_damaging(0.929) TCGA-EE-A2MR-06 11 92532833 92532833 C T FAT3 Silent p.I2218I 0.10 TCGA-EE-A2MR-06 11 92534885 92534885 C T FAT3 Silent p.F2902F 0.07 TCGA-EE-A2MR-06 11 92714791 92714791 C T MTNR1B Silent p.I134I 0.08 TCGA-EE-A2MR-06 11 9308057 9308057 G A TMEM41B Silent p.I217I 0.10 TCGA-EE-A2MR-06 11 93530766 93530766 G A MED17 Silent p.K403K 0.10 TCGA-EE-A2MR-06 11 94861746 94861746 C T ENDOD1 Missense_Mutation p.S169F 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A2MR-06 11 9610157 9610157 C T WEE1 3'UTR 0.13 TCGA-EE-A2MR-06 12 1005638 1005638 G A WNK1 Silent p.K1995K 0.16 TCGA-EE-A2MR-06 12 100717320 100717320 C T SCYL2 Silent p.I471I 0.10 TCGA-EE-A2MR-06 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.11 tolerated(0.24) possibly_damaging(0.761) TCGA-EE-A2MR-06 12 101603327 101603327 C T SLC5A8 Silent p.A100A 0.18 TCGA-EE-A2MR-06 12 101880303 101880303 G A SPIC Silent p.Q167Q 0.13 TCGA-EE-A2MR-06 12 102056249 102056249 G A MYBPC1 Missense_Mutation p.E691K 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 12 10332194 10332194 C T TMEM52B Missense_Mutation p.S2L 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-EE-A2MR-06 12 104071241 104071241 T A STAB2 Missense_Mutation p.I886N 0.10 deleterious(0.03) possibly_damaging(0.653) TCGA-EE-A2MR-06 12 104190780 104190780 G A NT5DC3 Silent p.F215F 0.10 TCGA-EE-A2MR-06 12 104190803 104190803 G A NT5DC3 Missense_Mutation p.H208Y 0.23 deleterious(0) possibly_damaging(0.56) TCGA-EE-A2MR-06 12 106729506 106729506 G A TCP11L2 Missense_Mutation p.E288K 0.16 tolerated(0.75) benign(0.022) TCGA-EE-A2MR-06 12 10774545 10774545 G A STYK1 Missense_Mutation p.P332S 0.09 tolerated(0.11) probably_damaging(0.968) TCGA-EE-A2MR-06 12 108029148 108029148 G A BTBD11 Silent p.R906R 0.08 TCGA-EE-A2MR-06 12 108985577 108985577 C T TMEM119 Missense_Mutation p.D195N 0.13 tolerated(0.07) benign(0.032) TCGA-EE-A2MR-06 12 109605748 109605748 C T ACACB Silent p.S278S 0.14 TCGA-EE-A2MR-06 12 109617093 109617093 C T ACACB Silent p.F546F 0.11 TCGA-EE-A2MR-06 12 109684049 109684049 C T ACACB Silent p.I1789I 0.09 TCGA-EE-A2MR-06 12 109684074 109684074 C T ACACB Missense_Mutation p.R1798C 0.08 deleterious(0.02) benign(0.005) TCGA-EE-A2MR-06 12 109826556 109826556 C T MYO1H Silent p.V11V 0.12 TCGA-EE-A2MR-06 12 110764234 110764234 C A ATP2A2 Missense_Mutation p.P195H 0.09 tolerated(0.08) benign(0.094) TCGA-EE-A2MR-06 12 111348965 111348965 G A MYL2 Silent p.F139F 0.08 TCGA-EE-A2MR-06 12 111785569 111785569 G A CUX2 Missense_Mutation p.E1301K 0.13 deleterious_low_confidence(0) benign(0.211) TCGA-EE-A2MR-06 12 112171746 112171746 C T ACAD10 Missense_Mutation p.H503Y 0.10 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MR-06 12 112235944 112235944 G A ALDH2 Silent p.A382A 0.11 TCGA-EE-A2MR-06 12 113532927 113532927 C T DTX1 Silent p.F489F 0.11 TCGA-EE-A2MR-06 12 113875910 113875910 C T SDSL 3'UTR 0.14 TCGA-EE-A2MR-06 12 114358414 114358414 A G RBM19 Splice_Site p.X795_splice 0.07 TCGA-EE-A2MR-06 12 114385141 114385141 G A RBM19 Nonsense_Mutation p.Q469* 0.10 TCGA-EE-A2MR-06 12 11461501 11461501 C T PRB4 Missense_Mutation p.G139E 0.10 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2MR-06 12 115120642 115120642 C T TBX3 Missense_Mutation p.E122K 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 11546281 11546281 C T PRB2 Missense_Mutation p.G244E 0.08 deleterious(0.01) unknown(0) TCGA-EE-A2MR-06 12 116434436 116434436 G A MED13L Silent p.S947S 0.27 TCGA-EE-A2MR-06 12 117685180 117685180 G A NOS1 Silent p.F966F 0.10 TCGA-EE-A2MR-06 12 117914318 117914318 C T KSR2 Missense_Mutation p.E845K 0.30 deleterious(0.02) possibly_damaging(0.739) TCGA-EE-A2MR-06 12 119554781 119554781 G A SRRM4 Silent p.K135K 0.11 TCGA-EE-A2MR-06 12 11992146 11992146 T C ETV6 Missense_Mutation p.L79S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 120168404 120168404 G A CIT Missense_Mutation p.R1128C 0.12 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 12 120582578 120582578 G A GCN1L1 Silent p.I1739I 0.08 TCGA-EE-A2MR-06 12 120750397 120750397 C T SIRT4 Silent p.V212V 0.15 TCGA-EE-A2MR-06 12 121206241 121206241 G A SPPL3 Silent p.A220A 0.11 TCGA-EE-A2MR-06 12 121465519 121465519 A T OASL Missense_Mutation p.N253K 0.06 tolerated(0.1) benign(0.11) TCGA-EE-A2MR-06 12 121691199 121691199 G A CAMKK2 Silent p.I328I 0.08 TCGA-EE-A2MR-06 12 122294236 122294236 G A HPD Silent p.I106I 0.13 TCGA-EE-A2MR-06 12 122296737 122296737 C T HPD 5'UTR 0.09 TCGA-EE-A2MR-06 12 122439469 122439469 G A WDR66 Missense_Mutation p.G1101E 0.09 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A2MR-06 12 122676082 122676082 G A LRRC43 Missense_Mutation p.E353K 0.10 tolerated(0.08) probably_damaging(0.943) TCGA-EE-A2MR-06 12 122685385 122685385 C T LRRC43 Silent p.I571I 0.09 TCGA-EE-A2MR-06 12 12284868 12284868 G A LRP6 Missense_Mutation p.P1286L 0.07 deleterious(0.05) possibly_damaging(0.819) TCGA-EE-A2MR-06 12 123087242 123087242 C T KNTC1 Missense_Mutation p.H1594Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 12 123201215 123201215 C T HCAR3 Missense_Mutation p.D24N 0.16 tolerated(0.24) benign(0.149) TCGA-EE-A2MR-06 12 123213939 123213939 C T HCAR1 Silent p.S316S 0.10 TCGA-EE-A2MR-06 12 124257473 124257473 C T DNAH10 Silent p.F102F 0.08 TCGA-EE-A2MR-06 12 124297915 124297915 C T DNAH10 Missense_Mutation p.L999F 0.09 probably_damaging(0.91) TCGA-EE-A2MR-06 12 124335585 124335585 G A DNAH10 Missense_Mutation p.E1967K 0.12 probably_damaging(0.985) TCGA-EE-A2MR-06 12 124364289 124364289 G A DNAH10 Missense_Mutation p.G2741R 0.06 benign(0.027) TCGA-EE-A2MR-06 12 124411260 124411260 C T DNAH10 Silent p.L3882L 0.09 TCGA-EE-A2MR-06 12 125441662 125441662 G T DHX37 Missense_Mutation p.P726Q 0.10 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 12 125441663 125441663 G A DHX37 Missense_Mutation p.P726S 0.10 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MR-06 12 126137155 126137155 G A TMEM132B Missense_Mutation p.D690N 0.11 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 12 1299072 1299072 C T ERC1 Silent p.D735D 0.13 TCGA-EE-A2MR-06 12 130842030 130842030 G A PIWIL1 Missense_Mutation p.E533K 0.14 tolerated(0.54) benign(0.342) TCGA-EE-A2MR-06 12 13208816 13208816 C T KIAA1467 Silent p.F123F 0.10 TCGA-EE-A2MR-06 12 133220548 133220548 G A POLE Missense_Mutation p.P1389S 0.10 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MR-06 12 133384925 133384925 G A GOLGA3 Missense_Mutation p.R244W 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MR-06 12 13716487 13716487 C T GRIN2B Missense_Mutation p.V1229M 0.08 tolerated(0.18) possibly_damaging(0.708) TCGA-EE-A2MR-06 12 15654909 15654909 C T PTPRO Silent p.S339S 0.27 TCGA-EE-A2MR-06 12 1740506 1740506 G A WNT5B 5'UTR 0.14 TCGA-EE-A2MR-06 12 1755020 1755020 C T WNT5B Missense_Mutation p.L228F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 12 18858169 18858169 C T PLCZ1 Silent p.Q265Q 0.10 TCGA-EE-A2MR-06 12 19436542 19436542 C T PLEKHA5 Missense_Mutation p.P548S 0.07 tolerated(0.07) benign(0.176) TCGA-EE-A2MR-06 12 2058478 2058478 G A DCP1B Missense_Mutation p.P516L 0.14 deleterious(0.04) benign(0.093) TCGA-EE-A2MR-06 12 21028325 21028325 C T SLCO1B3 Missense_Mutation p.S295L 0.26 tolerated(0.06) benign(0.183) TCGA-EE-A2MR-06 12 21030819 21030819 T C SLCO1B3 Missense_Mutation p.Y362H 0.26 deleterious(0.02) benign(0.337) TCGA-EE-A2MR-06 12 21036459 21036459 C T SLCO1B3 Silent p.F535F 0.12 TCGA-EE-A2MR-06 12 21036534 21036534 G A SLCO1B3 Silent p.V560V 0.12 TCGA-EE-A2MR-06 12 21172237 21172237 G A SLCO1B7 Silent p.P47P 0.19 TCGA-EE-A2MR-06 12 21472420 21472420 C T SLCO1A2 Intron 0.25 TCGA-EE-A2MR-06 12 21636346 21636346 G A RECQL Missense_Mutation p.H222Y 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 21712069 21712069 G A GYS2 Nonsense_Mutation p.R422* 0.20 TCGA-EE-A2MR-06 12 21967627 21967627 C T ABCC9 Silent p.G1351G 0.31 TCGA-EE-A2MR-06 12 22028661 22028661 C T ABCC9 Splice_Site p.X674_splice 0.17 TCGA-EE-A2MR-06 12 22040791 22040791 G A ABCC9 Missense_Mutation p.P627L 0.17 tolerated(0.23) benign(0.002) TCGA-EE-A2MR-06 12 22089560 22089560 C T ABCC9 Missense_Mutation p.D17N 0.22 tolerated(0.53) benign(0) TCGA-EE-A2MR-06 12 23687209 23687209 G A SOX5 Missense_Mutation p.P746S 0.12 tolerated_low_confidence(0.05) benign(0.293) TCGA-EE-A2MR-06 12 23999037 23999037 C T SOX5 Missense_Mutation p.G121S 0.18 tolerated(0.84) benign(0.01) TCGA-EE-A2MR-06 12 266293 266293 G A IQSEC3 Silent p.E752E 0.23 TCGA-EE-A2MR-06 12 266730 266730 G A IQSEC3 Silent p.Q771Q 0.13 TCGA-EE-A2MR-06 12 27850085 27850085 C T REP15 Missense_Mutation p.A197V 0.11 tolerated(0.27) benign(0.063) TCGA-EE-A2MR-06 12 28116635 28116635 C T PTHLH Missense_Mutation p.R57Q 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A2MR-06 12 28605449 28605449 C T CCDC91 Silent p.V321V 0.26 TCGA-EE-A2MR-06 12 29648366 29648366 C T OVCH1 Silent p.V102V 0.18 TCGA-EE-A2MR-06 12 2968072 2968072 C T FOXM1 Missense_Mutation p.R713K 0.08 deleterious(0.02) benign(0.001) TCGA-EE-A2MR-06 12 301751 301751 G A SLC6A12 Missense_Mutation p.P532S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 31945104 31945104 C T H3F3C 5'UTR 0.16 TCGA-EE-A2MR-06 12 33003895 33003895 G A PKP2 Missense_Mutation p.R395C 0.13 deleterious(0.03) possibly_damaging(0.893) TCGA-EE-A2MR-06 12 33030963 33030963 C T PKP2 Missense_Mutation p.R284K 0.12 tolerated(0.15) benign(0.008) TCGA-EE-A2MR-06 12 33031367 33031367 C T PKP2 Silent p.E149E 0.13 TCGA-EE-A2MR-06 12 3677988 3677988 G A PRMT8 Missense_Mutation p.V200M 0.12 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MR-06 12 38710566 38710566 C T ALG10B 5'UTR 0.22 TCGA-EE-A2MR-06 12 39223219 39223219 G A CPNE8 Silent p.I123I 0.10 TCGA-EE-A2MR-06 12 41419077 41419077 C T CNTN1 Silent p.A883A 0.08 TCGA-EE-A2MR-06 12 44238470 44238470 C T TMEM117 Missense_Mutation p.R6C 0.14 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 12 4479941 4479941 G A FGF23 Silent p.F108F 0.14 TCGA-EE-A2MR-06 12 44917141 44917141 C T NELL2 Missense_Mutation p.G694E 0.09 tolerated(0.13) benign(0.007) TCGA-EE-A2MR-06 12 47629323 47629323 C T PCED1B Silent p.L159L 0.12 TCGA-EE-A2MR-06 12 47629874 47629874 C T PCED1B Missense_Mutation p.S343F 0.14 tolerated(0.16) possibly_damaging(0.675) TCGA-EE-A2MR-06 12 48393715 48393715 G A COL2A1 Silent p.L93L 0.11 TCGA-EE-A2MR-06 12 48458892 48458892 G A SENP1 Missense_Mutation p.H411Y 0.30 tolerated(0.18) benign(0.001) TCGA-EE-A2MR-06 12 48919962 48919962 C T OR8S1 Missense_Mutation p.S183F 0.10 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2MR-06 12 49065687 49065687 G A KANSL2 Missense_Mutation p.R202C 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 12 4919811 4919811 G A KCNA6 Missense_Mutation p.D202N 0.13 tolerated(0.12) benign(0.063) TCGA-EE-A2MR-06 12 49233689 49233689 G A DDX23 Nonsense_Mutation p.Q140* 0.15 TCGA-EE-A2MR-06 12 49445423 49445423 G A KMT2D Silent p.S681S 0.09 TCGA-EE-A2MR-06 12 49937160 49937160 G A KCNH3 Missense_Mutation p.D228N 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 49949581 49949581 G A KCNH3 Missense_Mutation p.R772Q 0.12 tolerated(0.24) benign(0) TCGA-EE-A2MR-06 12 5020952 5020952 C T KCNA1 Silent p.F136F 0.16 TCGA-EE-A2MR-06 12 5021210 5021210 C T KCNA1 Silent p.F222F 0.14 TCGA-EE-A2MR-06 12 50532357 50532357 G A CERS5 Missense_Mutation p.P179L 0.08 deleterious(0.01) possibly_damaging(0.628) TCGA-EE-A2MR-06 12 50532358 50532358 G A CERS5 Missense_Mutation p.P179S 0.08 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MR-06 12 50854977 50854977 C T LARP4 Missense_Mutation p.S394F 0.11 deleterious(0.01) possibly_damaging(0.664) TCGA-EE-A2MR-06 12 5154030 5154030 C T KCNA5 Silent p.I239I 0.10 TCGA-EE-A2MR-06 12 51690900 51690900 C T BIN2 Silent p.R217R 0.14 TCGA-EE-A2MR-06 12 51751158 51751158 G A GALNT6 Missense_Mutation p.S526F 0.15 tolerated(0.6) benign(0.116) TCGA-EE-A2MR-06 12 51851302 51851302 C T SLC4A8 Missense_Mutation p.P248S 0.10 tolerated(0.32) benign(0.248) TCGA-EE-A2MR-06 12 51887520 51887520 C T SLC4A8 Silent p.F911F 0.12 TCGA-EE-A2MR-06 12 52756079 52756079 G A KRT85 Silent p.I418I 0.08 TCGA-EE-A2MR-06 12 52756661 52756661 C T KRT85 Missense_Mutation p.E352K 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MR-06 12 52818276 52818276 G A KRT75 3'UTR 0.09 TCGA-EE-A2MR-06 12 52844314 52844314 C T KRT6B Missense_Mutation p.E211K 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MR-06 12 52864920 52864920 G A KRT6C Missense_Mutation p.T358I 0.12 deleterious(0.05) possibly_damaging(0.506) TCGA-EE-A2MR-06 12 52980754 52980754 C T KRT72 Missense_Mutation p.E441K 0.21 deleterious(0) benign(0.443) TCGA-EE-A2MR-06 12 53068779 53068779 G A KRT1 3'UTR 0.19 TCGA-EE-A2MR-06 12 53070916 53070916 G A KRT1 Missense_Mutation p.S394L 0.13 deleterious(0.01) benign(0.206) TCGA-EE-A2MR-06 12 53070922 53070922 C T KRT1 Missense_Mutation p.R392K 0.14 tolerated(0.9) benign(0.07) TCGA-EE-A2MR-06 12 53169180 53169180 G A KRT76 Silent p.F269F 0.09 TCGA-EE-A2MR-06 12 53201524 53201524 C T KRT4 Missense_Mutation p.R417Q 0.11 deleterious(0.05) benign(0.098) TCGA-EE-A2MR-06 12 53646906 53646906 C T MFSD5 Missense_Mutation p.S203F 0.09 deleterious(0) possibly_damaging(0.666) TCGA-EE-A2MR-06 12 53671347 53671347 C T ESPL1 Missense_Mutation p.R727C 0.09 deleterious(0.03) benign(0.009) TCGA-EE-A2MR-06 12 53685505 53685505 C T ESPL1 Missense_Mutation p.P1851L 0.08 deleterious(0.01) benign(0.297) TCGA-EE-A2MR-06 12 53722523 53722523 C T SP7 Missense_Mutation p.G235R 0.13 tolerated(0.22) benign(0.047) TCGA-EE-A2MR-06 12 53776470 53776470 T C SP1 Missense_Mutation p.S247P 0.11 tolerated(0.56) possibly_damaging(0.665) TCGA-EE-A2MR-06 12 53776471 53776471 C T SP1 Missense_Mutation p.S247L 0.12 tolerated(0.12) possibly_damaging(0.587) TCGA-EE-A2MR-06 12 53823296 53823296 G A AMHR2 Missense_Mutation p.E343K 0.10 tolerated(0.17) possibly_damaging(0.621) TCGA-EE-A2MR-06 12 53931283 53931283 G A ATF7 Silent p.I106I 0.13 TCGA-EE-A2MR-06 12 54115306 54115306 C T CALCOCO1 Missense_Mutation p.D235N 0.15 tolerated(0.05) benign(0.201) TCGA-EE-A2MR-06 12 55039483 55039483 C T DCD Missense_Mutation p.E36K 0.12 tolerated_low_confidence(0.21) possibly_damaging(0.486) TCGA-EE-A2MR-06 12 55886309 55886309 G A OR6C68 Missense_Mutation p.D50N 0.10 deleterious_low_confidence(0.04) benign(0.354) TCGA-EE-A2MR-06 12 56088288 56088288 G A ITGA7 Missense_Mutation p.L770F 0.15 deleterious(0.03) benign(0.017) TCGA-EE-A2MR-06 12 56234926 56234926 G A MMP19 Missense_Mutation p.P90S 0.09 tolerated(0.16) probably_damaging(1) TCGA-EE-A2MR-06 12 56346536 56346536 G A DGKA Missense_Mutation p.D588N 0.13 tolerated(0.07) benign(0.108) TCGA-EE-A2MR-06 12 56495863 56495863 G A ERBB3 3'UTR 0.12 TCGA-EE-A2MR-06 12 56495867 56495867 C T ERBB3 3'UTR 0.12 TCGA-EE-A2MR-06 12 5672726 5672726 C T ANO2 Silent p.V912V 0.10 TCGA-EE-A2MR-06 12 56822103 56822103 G A TIMELESS Missense_Mutation p.L499F 0.15 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 12 56822104 56822104 G A TIMELESS Silent p.F498F 0.15 TCGA-EE-A2MR-06 12 56874097 56874097 C T GLS2 Missense_Mutation p.R86Q 0.10 tolerated(0.37) benign(0.011) TCGA-EE-A2MR-06 12 57324215 57324215 C T SDR9C7 Missense_Mutation p.E119K 0.23 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MR-06 12 57389900 57389900 G A GPR182 Missense_Mutation p.D303N 0.09 tolerated(0.08) possibly_damaging(0.845) TCGA-EE-A2MR-06 12 57398520 57398520 T A ZBTB39 Missense_Mutation p.N61I 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MR-06 12 57422530 57422530 G T MYO1A 3'UTR 0.14 TCGA-EE-A2MR-06 12 57579531 57579531 C T LRP1 Silent p.F2227F 0.24 TCGA-EE-A2MR-06 12 57638321 57638321 G T STAC3 Missense_Mutation p.P269T 0.13 tolerated(0.09) benign(0.053) TCGA-EE-A2MR-06 12 57651864 57651864 G A R3HDM2 Silent p.P772P 0.17 TCGA-EE-A2MR-06 12 57828693 57828693 C T INHBC Silent p.A8A 0.14 TCGA-EE-A2MR-06 12 57861263 57861263 C T GLI1 Missense_Mutation p.R354W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 12 57872921 57872921 G A ARHGAP9 Missense_Mutation p.S90F 0.08 tolerated(0.7) benign(0.004) TCGA-EE-A2MR-06 12 57881812 57881812 G A MARS 5'UTR 0.12 TCGA-EE-A2MR-06 12 57957251 57957251 C T KIF5A Silent p.F53F 0.15 TCGA-EE-A2MR-06 12 57957965 57957965 C T KIF5A Silent p.S122S 0.10 TCGA-EE-A2MR-06 12 58014116 58014116 C T SLC26A10 Missense_Mutation p.S38F 0.08 tolerated_low_confidence(0.47) benign(0.002) TCGA-EE-A2MR-06 12 58016868 58016868 C T SLC26A10 Missense_Mutation p.S334L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 12 58121770 58121770 C T AGAP2 Missense_Mutation p.E906K 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MR-06 12 5841745 5841745 C T ANO2 Missense_Mutation p.E496K 0.13 tolerated(1) benign(0.004) TCGA-EE-A2MR-06 12 6030346 6030346 C T ANO2 Missense_Mutation p.G128S 0.19 tolerated(0.67) benign(0.039) TCGA-EE-A2MR-06 12 6076747 6076747 C T VWF Missense_Mutation p.D2598N 0.12 tolerated(0.06) probably_damaging(0.948) TCGA-EE-A2MR-06 12 6103305 6103305 C T VWF Nonsense_Mutation p.W2107* 0.09 TCGA-EE-A2MR-06 12 6127746 6127746 G A VWF Missense_Mutation p.S1613F 0.17 deleterious(0) probably_damaging(0.963) TCGA-EE-A2MR-06 12 6347001 6347001 C T CD9 3'UTR 0.11 TCGA-EE-A2MR-06 12 6438724 6438724 G A TNFRSF1A Silent p.F374F 0.13 TCGA-EE-A2MR-06 12 654586 654586 G A B4GALNT3 Missense_Mutation p.S197N 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 661694 661694 G A B4GALNT3 Missense_Mutation p.G424S 0.13 tolerated(0.08) possibly_damaging(0.619) TCGA-EE-A2MR-06 12 6666365 6666365 G A NOP2 Missense_Mutation p.H778Y 0.10 tolerated_low_confidence(1) benign(0.021) TCGA-EE-A2MR-06 12 6692060 6692060 T A CHD4 Missense_Mutation p.D1397V 0.11 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 12 6702615 6702615 G A CHD4 Silent p.A827A 0.10 TCGA-EE-A2MR-06 12 69983283 69983283 C T CCT2 Silent p.F155F 0.14 TCGA-EE-A2MR-06 12 70049224 70049224 C T BEST3 Silent p.V490V 0.17 TCGA-EE-A2MR-06 12 7026767 7026767 C T ENO2 Silent p.I111I 0.17 TCGA-EE-A2MR-06 12 71002983 71002983 C T PTPRB Missense_Mutation p.G282E 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MR-06 12 7172518 7172518 G A C1S Missense_Mutation p.G211E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 12 7177809 7177809 C T C1S Missense_Mutation p.P641S 0.14 tolerated(0.06) possibly_damaging(0.764) TCGA-EE-A2MR-06 12 7289618 7289618 C T CLSTN3 Silent p.F374F 0.10 TCGA-EE-A2MR-06 12 75601755 75601755 C T KCNC2 Silent p.K3K 0.20 TCGA-EE-A2MR-06 12 76425163 76425163 G A PHLDA1 Missense_Mutation p.P120L 0.16 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-EE-A2MR-06 12 76783474 76783474 A T OSBPL8 Missense_Mutation p.F435I 0.09 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2MR-06 12 7843026 7843026 G A GDF3 Silent p.F181F 0.10 TCGA-EE-A2MR-06 12 7843217 7843217 C T GDF3 Missense_Mutation p.E118K 0.09 tolerated(0.09) benign(0.126) TCGA-EE-A2MR-06 12 78513574 78513574 G A NAV3 Missense_Mutation p.E1200K 0.08 deleterious(0) benign(0.304) TCGA-EE-A2MR-06 12 81101536 81101536 T G MYF6 Missense_Mutation p.F13C 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 12 81111235 81111235 C T MYF5 Silent p.I131I 0.10 TCGA-EE-A2MR-06 12 81536910 81536910 C T ACSS3 Missense_Mutation p.R269C 0.11 deleterious(0.01) benign(0.024) TCGA-EE-A2MR-06 12 81536943 81536943 G A ACSS3 Missense_Mutation p.A280T 0.12 tolerated(0.07) benign(0.059) TCGA-EE-A2MR-06 12 8192670 8192670 C T FOXJ2 Missense_Mutation p.S81F 0.11 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 12 8196301 8196301 C T FOXJ2 Missense_Mutation p.S138F 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 12 86198863 86198863 C T RASSF9 Missense_Mutation p.E309K 0.09 deleterious(0.04) benign(0.06) TCGA-EE-A2MR-06 12 8687390 8687390 C T CLEC4E Silent p.G168G 0.12 TCGA-EE-A2MR-06 12 8691854 8691854 G A CLEC4E Missense_Mutation p.P60L 0.09 tolerated(0.69) benign(0.001) TCGA-EE-A2MR-06 12 9147804 9147804 G A KLRG1 Missense_Mutation p.E93K 0.31 tolerated(1) benign(0) TCGA-EE-A2MR-06 12 9248242 9248242 C T A2M Missense_Mutation p.D636N 0.08 tolerated(0.18) benign(0.004) TCGA-EE-A2MR-06 12 93100509 93100509 C T C12orf74 Silent p.L34L 0.10 TCGA-EE-A2MR-06 12 9333681 9333681 G A PZP Silent p.A579A 0.15 TCGA-EE-A2MR-06 12 95603750 95603750 G A FGD6 Missense_Mutation p.S437L 0.14 tolerated_low_confidence(0.4) benign(0.004) TCGA-EE-A2MR-06 12 95918458 95918458 G A USP44 Silent p.F577F 0.08 TCGA-EE-A2MR-06 12 95927357 95927357 C T USP44 Missense_Mutation p.E226K 0.11 tolerated_low_confidence(0.57) benign(0.004) TCGA-EE-A2MR-06 12 96077343 96077343 C T NTN4 Missense_Mutation p.G442E 0.13 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A2MR-06 12 96180998 96180998 G A NTN4 Missense_Mutation p.P102S 0.17 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MR-06 12 978262 978262 C T WNK1 Intron 0.10 TCGA-EE-A2MR-06 12 98848742 98848742 C T SLC9A7P1 RNA 0.38 TCGA-EE-A2MR-06 13 108518274 108518274 G A FAM155A Missense_Mutation p.S224L 0.12 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2MR-06 13 111156230 111156230 G A COL4A2 Missense_Mutation p.G1392E 0.12 probably_damaging(0.982) TCGA-EE-A2MR-06 13 113474224 113474224 C T ATP11A Missense_Mutation p.R229C 0.14 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MR-06 13 19751732 19751732 C T TUBA3C Missense_Mutation p.G131R 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A2MR-06 13 21166519 21166519 C T IFT88 Missense_Mutation p.P134L 0.28 tolerated(0.16) benign(0.069) TCGA-EE-A2MR-06 13 21563271 21563271 G A LATS2 Silent p.F216F 0.26 TCGA-EE-A2MR-06 13 24890227 24890227 G A C1QTNF9 Missense_Mutation p.G29E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 13 25049707 25049707 G A PARP4 Missense_Mutation p.S606F 0.16 tolerated(0.72) benign(0.003) TCGA-EE-A2MR-06 13 25670559 25670559 G A PABPC3 Missense_Mutation p.D75N 0.14 deleterious(0) benign(0.3) TCGA-EE-A2MR-06 13 26402264 26402264 C T ATP8A2 Silent p.F896F 0.11 TCGA-EE-A2MR-06 13 28543215 28543215 G A CDX2 5'UTR 0.27 TCGA-EE-A2MR-06 13 28631588 28631588 G A FLT3 Missense_Mutation p.S127F 0.19 deleterious(0) probably_damaging(0.917) TCGA-EE-A2MR-06 13 28877293 28877293 C T FLT1 3'UTR 0.12 TCGA-EE-A2MR-06 13 28880827 28880827 G A FLT1 Missense_Mutation p.S1268L 0.09 tolerated(0.12) benign(0.003) TCGA-EE-A2MR-06 13 29599268 29599268 G A MTUS2 Missense_Mutation p.D155N 0.21 deleterious(0.03) benign(0.051) TCGA-EE-A2MR-06 13 30091297 30091297 G A SLC7A1 Missense_Mutation p.T554I 0.21 tolerated(0.07) possibly_damaging(0.495) TCGA-EE-A2MR-06 13 32653147 32653147 C T FRY Missense_Mutation p.R83C 0.13 deleterious(0.03) benign(0.008) TCGA-EE-A2MR-06 13 32811724 32811724 C T FRY Nonsense_Mutation p.Q2007* 0.14 TCGA-EE-A2MR-06 13 33628097 33628097 C T KL Missense_Mutation p.P338L 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 13 33704213 33704213 C T STARD13 Missense_Mutation p.E201K 0.19 tolerated(0.44) possibly_damaging(0.703) TCGA-EE-A2MR-06 13 36748901 36748901 C T SOHLH2 Silent p.V326V 0.21 TCGA-EE-A2MR-06 13 37453748 37453748 C T SMAD9 Missense_Mutation p.G27R 0.13 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A2MR-06 13 37679021 37679021 C T CSNK1A1L Missense_Mutation p.E125K 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MR-06 13 39265018 39265018 C T FREM2 Silent p.F1179F 0.18 TCGA-EE-A2MR-06 13 39265030 39265030 C T FREM2 Silent p.I1183I 0.18 TCGA-EE-A2MR-06 13 39588539 39588539 G A PROSER1 Missense_Mutation p.P284S 0.17 deleterious(0.01) possibly_damaging(0.547) TCGA-EE-A2MR-06 13 42161681 42161681 C T VWA8 Missense_Mutation p.M1746I 0.13 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MR-06 13 46425736 46425736 G A SIAH3 Missense_Mutation p.A10V 0.12 deleterious_low_confidence(0.04) benign(0.283) TCGA-EE-A2MR-06 13 50502123 50502123 G A SPRYD7 Missense_Mutation p.L108F 0.10 tolerated(0.07) benign(0.305) TCGA-EE-A2MR-06 13 51952473 51952473 G A INTS6 Nonsense_Mutation p.Q502* 0.14 TCGA-EE-A2MR-06 13 52516652 52516652 G A ATP7B Silent p.F1094F 0.18 TCGA-EE-A2MR-06 13 52534337 52534337 G A ATP7B Missense_Mutation p.P690S 0.18 deleterious(0.02) possibly_damaging(0.842) TCGA-EE-A2MR-06 13 52548993 52548993 G A ATP7B Silent p.F121F 0.13 TCGA-EE-A2MR-06 13 53422283 53422283 C T PCDH8 Missense_Mutation p.G97S 0.21 tolerated(0.1) benign(0.439) TCGA-EE-A2MR-06 13 58209173 58209173 C A PCDH17 Silent p.G831G 0.10 TCGA-EE-A2MR-06 13 61986627 61986627 G A PCDH20 Silent p.F535F 0.16 TCGA-EE-A2MR-06 13 72256034 72256034 G A DACH1 Missense_Mutation p.P288L 0.35 probably_damaging(0.966) TCGA-EE-A2MR-06 13 95861734 95861734 G A ABCC4 Missense_Mutation p.L247F 0.12 tolerated(0.37) benign(0.169) TCGA-EE-A2MR-06 13 96578027 96578027 A G UGGT2 Silent p.D734D 0.38 TCGA-EE-A2MR-06 13 98645422 98645422 C T IPO5 Missense_Mutation p.L304F 0.35 tolerated(0.1) possibly_damaging(0.601) TCGA-EE-A2MR-06 14 100934477 100934477 C T WDR25 Silent p.F314F 0.18 TCGA-EE-A2MR-06 14 101004277 101004277 G A BEGAIN 3'UTR 0.13 TCGA-EE-A2MR-06 14 101335450 101335450 C T MIR493 RNA 0.16 TCGA-EE-A2MR-06 14 102028440 102028440 C T DIO3 Missense_Mutation p.P203S 0.08 tolerated(0.15) benign(0.31) TCGA-EE-A2MR-06 14 102028503 102028503 G A DIO3 Missense_Mutation p.D224N 0.11 deleterious(0) benign(0.313) TCGA-EE-A2MR-06 14 102460584 102460584 C T DYNC1H1 Missense_Mutation p.P1027S 0.12 benign(0.21) TCGA-EE-A2MR-06 14 102476784 102476784 C T DYNC1H1 Silent p.L2131L 0.20 TCGA-EE-A2MR-06 14 102493581 102493581 C T DYNC1H1 Missense_Mutation p.R2948C 0.19 probably_damaging(0.998) TCGA-EE-A2MR-06 14 102500716 102500716 C T DYNC1H1 Missense_Mutation p.R3561C 0.10 possibly_damaging(0.892) TCGA-EE-A2MR-06 14 102500766 102500766 C T DYNC1H1 Silent p.A3577A 0.10 TCGA-EE-A2MR-06 14 102516080 102516080 C T DYNC1H1 Silent p.F4515F 0.17 TCGA-EE-A2MR-06 14 102675509 102675509 C T WDR20 Silent p.F365F 0.14 TCGA-EE-A2MR-06 14 103371842 103371842 C T TRAF3 Silent p.V476V 0.09 TCGA-EE-A2MR-06 14 104040507 104040507 G A RP11-73M18.2 Missense_Mutation p.G142S 0.15 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-EE-A2MR-06 14 105407010 105407010 C A AHNAK2 Silent p.V4926V 0.17 TCGA-EE-A2MR-06 14 105408781 105408781 G A AHNAK2 Missense_Mutation p.S4336F 0.16 possibly_damaging(0.859) TCGA-EE-A2MR-06 14 105408933 105408933 G A AHNAK2 Silent p.S4285S 0.10 TCGA-EE-A2MR-06 14 105413501 105413501 G A AHNAK2 Missense_Mutation p.P2763S 0.17 benign(0.29) TCGA-EE-A2MR-06 14 105421878 105421878 G A AHNAK2 Silent p.I136I 0.14 TCGA-EE-A2MR-06 14 105716968 105716968 G A BTBD6 Missense_Mutation p.V473I 0.17 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A2MR-06 14 105849723 105849723 C T PACS2 Silent p.T551T 0.13 TCGA-EE-A2MR-06 14 106208544 106208544 C T IGHG1 Missense_Mutation p.G119E 0.10 deleterious(0) possibly_damaging(0.725) TCGA-EE-A2MR-06 14 106235664 106235664 C T IGHG3 Silent p.Q348Q 0.13 TCGA-EE-A2MR-06 14 106321629 106321629 C T IGHM Missense_Mutation p.R202K 0.20 tolerated(1) benign(0.004) TCGA-EE-A2MR-06 14 106471463 106471463 C T IGHV1-3 Missense_Mutation p.G45E 0.13 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MR-06 14 106539229 106539229 C T IGHV1-8 Missense_Mutation p.M67I 0.13 tolerated(0.92) benign(0.005) TCGA-EE-A2MR-06 14 106610487 106610487 C T IGHV3-15 Silent p.G61G 0.28 TCGA-EE-A2MR-06 14 106845390 106845390 C T IGHV3-35 Missense_Mutation p.R95K 0.08 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MR-06 14 106866677 106866677 G A IGHV3-38 Missense_Mutation p.S26F 0.09 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-EE-A2MR-06 14 19378561 19378561 C T OR11H12 Missense_Mutation p.S323F 0.14 tolerated(0.11) benign(0.002) TCGA-EE-A2MR-06 14 20711020 20711020 C T OR11H4 Missense_Mutation p.L24F 0.17 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A2MR-06 14 20840970 20840970 A T TEP1 Missense_Mutation p.F2333Y 0.11 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A2MR-06 14 21270045 21270045 C T RNASE1 Silent p.R61R 0.19 TCGA-EE-A2MR-06 14 21270057 21270057 C T RNASE1 Missense_Mutation p.M57I 0.20 deleterious(0.01) possibly_damaging(0.609) TCGA-EE-A2MR-06 14 21762904 21762904 C T RPGRIP1 Nonsense_Mutation p.R52* 0.10 TCGA-EE-A2MR-06 14 21788232 21788232 G A RPGRIP1 Missense_Mutation p.E455K 0.18 tolerated(0.11) possibly_damaging(0.456) TCGA-EE-A2MR-06 14 21788275 21788275 C T RPGRIP1 Missense_Mutation p.P469L 0.14 tolerated(0.06) benign(0.033) TCGA-EE-A2MR-06 14 21878027 21878027 G T CHD8 Missense_Mutation p.P783T 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 14 22102213 22102213 G A OR10G2 Silent p.F262F 0.09 TCGA-EE-A2MR-06 14 22102746 22102746 G A OR10G2 Missense_Mutation p.R85W 0.16 deleterious(0) possibly_damaging(0.816) TCGA-EE-A2MR-06 14 22236791 22236791 G A TRAV6 Missense_Mutation p.R19Q 0.10 tolerated_low_confidence(0.63) benign(0.144) TCGA-EE-A2MR-06 14 22592148 22592148 C T TRAV26-1 Missense_Mutation p.S78F 0.20 tolerated(0.06) benign(0.073) TCGA-EE-A2MR-06 14 22616487 22616487 G A TRAV27 Silent p.L76L 0.27 TCGA-EE-A2MR-06 14 22891872 22891872 G A TRDV2 Missense_Mutation p.G62S 0.33 tolerated(0.26) benign(0.203) TCGA-EE-A2MR-06 14 22981873 22981873 G A TRAJ30 Missense_Mutation p.R14Q 0.25 unknown(0) TCGA-EE-A2MR-06 14 23020918 23020918 C T AE000662.92 5'Flank 0.26 TCGA-EE-A2MR-06 14 23303541 23303541 C T MRPL52 3'UTR 0.22 TCGA-EE-A2MR-06 14 23853900 23853900 C T MYH6 Silent p.K1772K 0.07 TCGA-EE-A2MR-06 14 23855815 23855815 C T MYH6 Silent p.E1556E 0.07 TCGA-EE-A2MR-06 14 23863004 23863004 C T MYH6 Silent p.E933E 0.11 TCGA-EE-A2MR-06 14 23873512 23873512 G A MYH6 Missense_Mutation p.S243F 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 14 23888752 23888752 C T MYH7 Missense_Mutation p.E1265K 0.09 deleterious(0.03) probably_damaging(0.953) TCGA-EE-A2MR-06 14 24035517 24035517 G A AP1G2 Silent p.L147L 0.08 TCGA-EE-A2MR-06 14 24537878 24537878 C T LRRC16B Silent p.F1256F 0.16 TCGA-EE-A2MR-06 14 24619927 24619927 C T RNF31 Missense_Mutation p.P440S 0.10 tolerated(0.13) benign(0.04) TCGA-EE-A2MR-06 14 24633331 24633331 C T IRF9 Missense_Mutation p.P213S 0.10 tolerated(0.18) benign(0.024) TCGA-EE-A2MR-06 14 24718641 24718641 C A TGM1 Missense_Mutation p.V778L 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 14 24718642 24718642 C T TGM1 Silent p.Q777Q 0.09 TCGA-EE-A2MR-06 14 24805496 24805496 G A RIPK3 Missense_Mutation p.P481L 0.09 tolerated(0.13) benign(0.105) TCGA-EE-A2MR-06 14 24884053 24884053 C T NYNRIN Missense_Mutation p.S1033F 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.577) TCGA-EE-A2MR-06 14 24884937 24884937 G A NYNRIN Missense_Mutation p.G1328S 0.09 deleterious_low_confidence(0.01) benign(0.204) TCGA-EE-A2MR-06 14 25043500 25043500 C T CTSG Missense_Mutation p.R182Q 0.12 tolerated(0.43) benign(0.005) TCGA-EE-A2MR-06 14 29237687 29237687 C T FOXG1 Missense_Mutation p.S401F 0.19 deleterious(0) benign(0.246) TCGA-EE-A2MR-06 14 36768293 36768293 G A MBIP Missense_Mutation p.P344L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MR-06 14 37145680 37145680 C T PAX9 3'UTR 0.16 TCGA-EE-A2MR-06 14 38678772 38678772 C T SSTR1 Silent p.L60L 0.12 TCGA-EE-A2MR-06 14 38724753 38724753 C T CLEC14A Missense_Mutation p.E159K 0.09 deleterious(0) probably_damaging(0.953) TCGA-EE-A2MR-06 14 42356660 42356660 C T LRFN5 Missense_Mutation p.P278S 0.11 tolerated(0.16) benign(0.016) TCGA-EE-A2MR-06 14 42361077 42361077 G A LRFN5 Silent p.R670R 0.11 TCGA-EE-A2MR-06 14 45624608 45624608 C T FANCM Missense_Mutation p.P448S 0.20 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MR-06 14 50241377 50241377 C T KLHDC2 Missense_Mutation p.S111L 0.15 tolerated(0.12) benign(0.016) TCGA-EE-A2MR-06 14 50295850 50295850 G A NEMF Missense_Mutation p.A385V 0.22 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MR-06 14 52496330 52496330 C T NID2 Missense_Mutation p.G779E 0.13 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A2MR-06 14 52734840 52734840 C T PTGDR Missense_Mutation p.S103L 0.12 tolerated(0.3) benign(0.011) TCGA-EE-A2MR-06 14 52741629 52741629 C T PTGDR Missense_Mutation p.L343F 0.29 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A2MR-06 14 53522577 53522577 G A DDHD1 Silent p.V682V 0.09 TCGA-EE-A2MR-06 14 55243226 55243226 C T SAMD4A Missense_Mutation p.S671F 0.15 deleterious(0.01) possibly_damaging(0.736) TCGA-EE-A2MR-06 14 55510906 55510906 C T SOCS4 Missense_Mutation p.R383W 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 14 58604994 58604994 C T C14orf37 Silent p.E361E 0.11 TCGA-EE-A2MR-06 14 58831239 58831239 C T ARID4A Missense_Mutation p.S811L 0.19 tolerated_low_confidence(0.08) benign(0.275) TCGA-EE-A2MR-06 14 59821888 59821888 C T DAAM1 Missense_Mutation p.R798C 0.22 tolerated(0.17) possibly_damaging(0.682) TCGA-EE-A2MR-06 14 60945082 60945082 G A C14orf39 Missense_Mutation p.R87C 0.23 deleterious(0.01) benign(0.185) TCGA-EE-A2MR-06 14 60977969 60977969 G A SIX6 Silent p.%3D 0.08 TCGA-EE-A2MR-06 14 61442775 61442775 C T TRMT5 Missense_Mutation p.E288K 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 14 61917660 61917660 G A PRKCH Missense_Mutation p.G268E 0.14 deleterious(0) benign(0.321) TCGA-EE-A2MR-06 14 62536422 62536422 C T SYT16 Missense_Mutation p.R209C 0.21 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A2MR-06 14 64468761 64468761 C T SYNE2 Missense_Mutation p.H1250Y 0.14 benign(0.005) TCGA-EE-A2MR-06 14 64519170 64519170 C T SYNE2 Nonsense_Mutation p.Q2847* 0.12 TCGA-EE-A2MR-06 14 64547343 64547343 C T SYNE2 Missense_Mutation p.S3778L 0.12 possibly_damaging(0.713) TCGA-EE-A2MR-06 14 64612818 64612818 C T SYNE2 Silent p.I5172I 0.16 TCGA-EE-A2MR-06 14 64879230 64879230 C T MTHFD1 Missense_Mutation p.T76I 0.16 tolerated(1) benign(0.011) TCGA-EE-A2MR-06 14 64896946 64896946 G A MTHFD1 Missense_Mutation p.E437K 0.09 deleterious(0) possibly_damaging(0.779) TCGA-EE-A2MR-06 14 64988994 64988994 G A ZBTB1 Missense_Mutation p.D258N 0.16 tolerated(0.32) benign(0.018) TCGA-EE-A2MR-06 14 65055950 65055950 C T PPP1R36 Missense_Mutation p.S388L 0.12 tolerated_low_confidence(0.21) benign(0.058) TCGA-EE-A2MR-06 14 65207891 65207891 G A PLEKHG3 Silent p.L496L 0.10 TCGA-EE-A2MR-06 14 65208639 65208639 C T PLEKHG3 Missense_Mutation p.P746S 0.16 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A2MR-06 14 65216835 65216835 C T SPTB Missense_Mutation p.E2214K 0.13 tolerated(0.12) benign(0.142) TCGA-EE-A2MR-06 14 65237848 65237848 C T SPTB Splice_Site p.X1852_splice 0.10 TCGA-EE-A2MR-06 14 65261237 65261237 C A SPTB Silent p.G581G 0.10 TCGA-EE-A2MR-06 14 65263298 65263298 C T SPTB Missense_Mutation p.E440K 0.10 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 14 65268514 65268514 C T SPTB Nonsense_Mutation p.W202* 0.11 TCGA-EE-A2MR-06 14 65289859 65289859 G A SPTB 5'UTR 0.21 TCGA-EE-A2MR-06 14 66200031 66200031 C T FUT8 Missense_Mutation p.R448C 0.11 deleterious(0.04) possibly_damaging(0.904) TCGA-EE-A2MR-06 14 67147886 67147886 C T GPHN Silent p.L42L 0.17 TCGA-EE-A2MR-06 14 68120182 68120182 G A VTI1B Missense_Mutation p.R192W 0.32 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MR-06 14 69263012 69263012 C T ZFP36L1 5'Flank 0.10 TCGA-EE-A2MR-06 14 70489977 70489977 C T SMOC1 Silent p.F368F 0.15 TCGA-EE-A2MR-06 14 71134392 71134392 C T TTC9 Missense_Mutation p.A173V 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 14 72976923 72976923 G A RGS6 Missense_Mutation p.D343N 0.10 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 14 73717620 73717620 C T PAPLN Silent p.V157V 0.08 TCGA-EE-A2MR-06 14 74009849 74009849 C T ACOT1 Silent p.V252V 0.14 TCGA-EE-A2MR-06 14 74041646 74041646 C T ACOT2 Missense_Mutation p.S294F 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 14 74762643 74762643 G A ABCD4 Silent p.F194F 0.13 TCGA-EE-A2MR-06 14 74824491 74824491 C T VRTN Silent p.F335F 0.13 TCGA-EE-A2MR-06 14 74961814 74961814 C T ISCA2 3'UTR 0.25 TCGA-EE-A2MR-06 14 74972790 74972790 C T LTBP2 Missense_Mutation p.D1380N 0.16 tolerated(0.07) possibly_damaging(0.877) TCGA-EE-A2MR-06 14 74991854 74991854 C T LTBP2 Missense_Mutation p.D835N 0.13 tolerated(0.25) benign(0.001) TCGA-EE-A2MR-06 14 75019046 75019046 C T LTBP2 Missense_Mutation p.E415K 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MR-06 14 76330014 76330014 C T TTLL5 Silent p.L1111L 0.19 TCGA-EE-A2MR-06 14 77732529 77732529 G A NGB 3'UTR 0.11 TCGA-EE-A2MR-06 14 78390841 78390841 C T ADCK1 Silent p.F300F 0.11 TCGA-EE-A2MR-06 14 80328081 80328081 G A NRXN3 Missense_Mutation p.G987E 0.18 deleterious(0) benign(0.001) TCGA-EE-A2MR-06 14 81558908 81558908 C T TSHR Silent p.I167I 0.10 TCGA-EE-A2MR-06 14 86088167 86088167 C T FLRT2 Silent p.F103F 0.12 TCGA-EE-A2MR-06 14 86088168 86088168 C T FLRT2 Missense_Mutation p.P104S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 14 86089055 86089055 T G FLRT2 Silent p.T399T 0.18 TCGA-EE-A2MR-06 14 88904536 88904536 C T SPATA7 Missense_Mutation p.H524Y 0.27 tolerated(0.15) benign(0) TCGA-EE-A2MR-06 14 89083224 89083224 C T EML5 Splice_Site p.X1881_splice 0.09 TCGA-EE-A2MR-06 14 91755549 91755549 G A CCDC88C Silent p.A1447A 0.07 TCGA-EE-A2MR-06 14 91755687 91755687 C T CCDC88C Silent p.K1401K 0.14 TCGA-EE-A2MR-06 14 91773492 91773492 C T CCDC88C Missense_Mutation p.G1029R 0.10 tolerated(0.11) benign(0.372) TCGA-EE-A2MR-06 14 92055879 92055879 C T CATSPERB Silent p.L985L 0.15 TCGA-EE-A2MR-06 14 92105548 92105548 G A CATSPERB Silent p.F493F 0.18 TCGA-EE-A2MR-06 14 92157894 92157894 G A CATSPERB Silent p.S279S 0.12 TCGA-EE-A2MR-06 14 92361396 92361396 C T FBLN5 Missense_Mutation p.D134N 0.15 tolerated(0.33) benign(0.003) TCGA-EE-A2MR-06 14 92470193 92470193 G A TRIP11 Missense_Mutation p.S1376L 0.11 deleterious(0.02) benign(0.238) TCGA-EE-A2MR-06 14 92949065 92949065 C T SLC24A4 Missense_Mutation p.L433F 0.10 deleterious(0) probably_damaging(0.924) TCGA-EE-A2MR-06 14 92958030 92958030 C T SLC24A4 Missense_Mutation p.S520F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 14 92958114 92958114 G A SLC24A4 Missense_Mutation p.G548E 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 14 92959855 92959855 C A SLC24A4 Missense_Mutation p.D584E 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 14 93408148 93408148 G A ITPK1 Silent p.L335L 0.21 TCGA-EE-A2MR-06 14 93581431 93581431 G A ITPK1 Silent p.A26A 0.16 TCGA-EE-A2MR-06 14 93709396 93709396 G A BTBD7 Silent p.I874I 0.09 TCGA-EE-A2MR-06 14 94038411 94038411 G A UNC79 Missense_Mutation p.E466K 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A2MR-06 14 94088193 94088193 C T UNC79 Silent p.I1361I 0.12 TCGA-EE-A2MR-06 14 94097238 94097238 C T UNC79 Silent p.S1723S 0.15 TCGA-EE-A2MR-06 14 94394934 94394934 G A FAM181A Silent p.R163R 0.12 TCGA-EE-A2MR-06 14 94756380 94756380 C T SERPINA10 Missense_Mutation p.R184K 0.18 tolerated(0.49) benign(0.001) TCGA-EE-A2MR-06 14 94756685 94756685 G A SERPINA10 Silent p.F82F 0.17 TCGA-EE-A2MR-06 14 94776282 94776282 C T SERPINA6 Silent p.E225E 0.12 TCGA-EE-A2MR-06 14 94780446 94780446 C T SERPINA6 Silent p.G180G 0.17 TCGA-EE-A2MR-06 14 94912891 94912891 A T SERPINA11 Missense_Mutation p.F232I 0.10 deleterious(0) possibly_damaging(0.83) TCGA-EE-A2MR-06 14 94914805 94914805 G A SERPINA11 Silent p.L103L 0.18 TCGA-EE-A2MR-06 14 94931175 94931175 T G SERPINA9 Missense_Mutation p.I325L 0.12 tolerated(0.52) benign(0.007) TCGA-EE-A2MR-06 14 94933482 94933482 C T SERPINA9 Missense_Mutation p.R307K 0.12 tolerated(0.97) benign(0.066) TCGA-EE-A2MR-06 14 95030123 95030123 C G SERPINA4 Missense_Mutation p.L102V 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MR-06 14 95030176 95030176 G A SERPINA4 Silent p.R119R 0.08 TCGA-EE-A2MR-06 14 95034466 95034466 G A SERPINA4 Silent p.R308R 0.13 TCGA-EE-A2MR-06 14 95053897 95053897 C T SERPINA5 Silent p.F66F 0.34 TCGA-EE-A2MR-06 14 95108047 95108047 C T SERPINA13P RNA 0.12 TCGA-EE-A2MR-06 14 95669314 95669314 G A CLMN Missense_Mutation p.P791L 0.12 deleterious(0) possibly_damaging(0.489) TCGA-EE-A2MR-06 14 95669758 95669758 G A CLMN Missense_Mutation p.P643L 0.10 tolerated_low_confidence(0.12) benign(0.021) TCGA-EE-A2MR-06 14 95670708 95670708 G A CLMN Silent p.F326F 0.11 TCGA-EE-A2MR-06 14 96134510 96134510 C T TCL6 Intron 0.18 TCGA-EE-A2MR-06 14 96134517 96134517 A T TCL6 Intron 0.18 TCGA-EE-A2MR-06 14 96178610 96178610 C T TCL1A Missense_Mutation p.G82R 0.08 tolerated(1) benign(0.015) TCGA-EE-A2MR-06 14 96706869 96706869 C T BDKRB2 Silent p.F68F 0.12 TCGA-EE-A2MR-06 14 96917830 96917830 C T AK7 Nonsense_Mutation p.R341* 0.10 TCGA-EE-A2MR-06 14 96922783 96922783 G A AK7 Missense_Mutation p.D400N 0.14 deleterious(0.03) probably_damaging(0.967) TCGA-EE-A2MR-06 14 99697791 99697791 G A BCL11B Silent p.L177L 0.23 TCGA-EE-A2MR-06 14 99723979 99723979 C T BCL11B Missense_Mutation p.G86S 0.16 tolerated(0.21) benign(0.001) TCGA-EE-A2MR-06 15 100594173 100594173 G A ADAMTS17 Missense_Mutation p.R742C 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 15 101109521 101109521 G A LINS Silent p.F732F 0.09 TCGA-EE-A2MR-06 15 101114268 101114268 G A LINS Silent p.F270F 0.19 TCGA-EE-A2MR-06 15 101549206 101549206 C T LRRK1 Silent p.L309L 0.14 TCGA-EE-A2MR-06 15 102346157 102346157 C T OR4F6 Missense_Mutation p.P79S 0.11 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-EE-A2MR-06 15 102462451 102462451 A T OR4F4 Missense_Mutation p.I271N 0.13 deleterious(0) possibly_damaging(0.812) TCGA-EE-A2MR-06 15 102462452 102462452 T C OR4F4 Missense_Mutation p.I271V 0.13 tolerated(0.29) benign(0.004) TCGA-EE-A2MR-06 15 22872493 22872493 C T TUBGCP5 Missense_Mutation p.P1008S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 15 22969327 22969327 C T CYFIP1 Silent p.F851F 0.17 TCGA-EE-A2MR-06 15 24921323 24921323 G A NPAP1 Silent p.R103R 0.09 TCGA-EE-A2MR-06 15 24922057 24922057 G A NPAP1 Missense_Mutation p.R348Q 0.14 tolerated(0.15) possibly_damaging(0.712) TCGA-EE-A2MR-06 15 24924268 24924268 C T NPAP1 Missense_Mutation p.A1085V 0.11 tolerated_low_confidence(0.12) benign(0.329) TCGA-EE-A2MR-06 15 25227216 25227216 C T SNRPN 3'Flank 0.15 TCGA-EE-A2MR-06 15 25227242 25227242 C T SNRPN 3'Flank 0.23 TCGA-EE-A2MR-06 15 25331747 25331747 C T SNORD116-19 RNA 0.12 TCGA-EE-A2MR-06 15 25438473 25438473 G A SNORD115-11 3'Flank 0.06 TCGA-EE-A2MR-06 15 25468322 25468322 C T SNORD115-27 3'Flank 0.15 TCGA-EE-A2MR-06 15 25477611 25477611 G A SNORD115-34 RNA 0.08 TCGA-EE-A2MR-06 15 25488766 25488766 G A SNORD115-40 RNA 0.08 TCGA-EE-A2MR-06 15 25488769 25488769 G A SNORD115-40 RNA 0.08 TCGA-EE-A2MR-06 15 28196950 28196950 G A OCA2 Missense_Mutation p.P644L 0.17 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MR-06 15 28375694 28375694 G A HERC2 Missense_Mutation p.S4206F 0.09 probably_damaging(1) TCGA-EE-A2MR-06 15 31795975 31795975 G A OTUD7A Missense_Mutation p.H307Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 15 32451836 32451836 C T CHRNA7 Missense_Mutation p.S316F 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 15 33603265 33603265 G A RYR3 Missense_Mutation p.G7R 0.15 benign(0.017) TCGA-EE-A2MR-06 15 34072483 34072483 C T RYR3 Missense_Mutation p.T3070I 0.16 benign(0.017) TCGA-EE-A2MR-06 15 34396351 34396351 G A PGBD4 Missense_Mutation p.R540H 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A2MR-06 15 34445233 34445233 G A KATNBL1 Missense_Mutation p.R66C 0.17 tolerated(0.19) benign(0.001) TCGA-EE-A2MR-06 15 34640229 34640229 C T NUTM1 Missense_Mutation p.P26S 0.10 tolerated(0.19) benign(0.046) TCGA-EE-A2MR-06 15 34642915 34642915 C T NUTM1 Missense_Mutation p.R246C 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 15 34649637 34649637 G A NUTM1 Missense_Mutation p.R1115K 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2MR-06 15 35207320 35207320 C T AQR Missense_Mutation p.R468K 0.11 deleterious(0.02) possibly_damaging(0.884) TCGA-EE-A2MR-06 15 40660824 40660824 C T DISP2 Silent p.F837F 0.16 TCGA-EE-A2MR-06 15 40685440 40685440 C T KNSTRN Intron 0.10 TCGA-EE-A2MR-06 15 40750676 40750676 C T BAHD1 Missense_Mutation p.R5W 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A2MR-06 15 41120711 41120711 C T PPP1R14D Silent p.P43P 0.09 TCGA-EE-A2MR-06 15 41223735 41223735 C T DLL4 Silent p.I143I 0.27 TCGA-EE-A2MR-06 15 41611960 41611960 G T OIP5 Missense_Mutation p.F136L 0.09 tolerated(0.16) benign(0.122) TCGA-EE-A2MR-06 15 41819267 41819267 C T RPAP1 Splice_Site p.X583_splice 0.09 TCGA-EE-A2MR-06 15 42002918 42002918 C T MGA Missense_Mutation p.R819C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 15 42138926 42138926 C A PLA2G4B Missense_Mutation p.L845M 0.11 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MR-06 15 42138927 42138927 T C PLA2G4B Missense_Mutation p.L845P 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A2MR-06 15 42651943 42651943 T A CAPN3 5'UTR 0.12 TCGA-EE-A2MR-06 15 43023869 43023869 G A CDAN1 Missense_Mutation p.T563I 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 15 43662001 43662001 G A ZSCAN29 Silent p.S37S 0.08 TCGA-EE-A2MR-06 15 43817099 43817099 G A MAP1A Missense_Mutation p.R1143Q 0.08 benign(0.004) TCGA-EE-A2MR-06 15 43817643 43817643 C T MAP1A Silent p.S1324S 0.12 TCGA-EE-A2MR-06 15 43896246 43896246 C T STRC Silent p.K1441K 0.17 TCGA-EE-A2MR-06 15 44048887 44048887 G A PDIA3 Missense_Mutation p.G96E 0.09 deleterious(0.05) possibly_damaging(0.654) TCGA-EE-A2MR-06 15 45392330 45392330 G A DUOX2 Silent p.F1034F 0.15 TCGA-EE-A2MR-06 15 45561593 45561593 G A SLC28A2 Missense_Mutation p.D476N 0.11 deleterious(0.01) possibly_damaging(0.889) TCGA-EE-A2MR-06 15 49059569 49059569 G A CEP152 Missense_Mutation p.L704F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 15 49917396 49917396 G A DTWD1 Missense_Mutation p.R11Q 0.41 tolerated_low_confidence(0.16) benign(0.001) TCGA-EE-A2MR-06 15 50497454 50497454 G A SLC27A2 Missense_Mutation p.R289Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 15 50544916 50544916 G A HDC Silent p.F281F 0.22 TCGA-EE-A2MR-06 15 50788176 50788176 C T USP8 Silent p.F930F 0.25 TCGA-EE-A2MR-06 15 51012139 51012139 G A SPPL2A Nonsense_Mutation p.Q496* 0.23 TCGA-EE-A2MR-06 15 51350368 51350368 G A TNFAIP8L3 Missense_Mutation p.R197W 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 15 51397292 51397292 C T TNFAIP8L3 Missense_Mutation p.G28R 0.28 tolerated_low_confidence(0.44) benign(0) TCGA-EE-A2MR-06 15 51791313 51791313 G A DMXL2 Missense_Mutation p.H1370Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 15 51792133 51792133 A T DMXL2 Silent p.V1096V 0.27 TCGA-EE-A2MR-06 15 52242083 52242083 G A LEO1 Nonsense_Mutation p.R574* 0.18 TCGA-EE-A2MR-06 15 52433395 52433395 G A GNB5 Missense_Mutation p.S190F 0.09 tolerated(0.07) probably_damaging(0.922) TCGA-EE-A2MR-06 15 52536615 52536615 G A MYO5C Silent p.F776F 0.09 TCGA-EE-A2MR-06 15 52553136 52553136 G A MYO5C Silent p.F412F 0.26 TCGA-EE-A2MR-06 15 54586244 54586244 G A UNC13C Missense_Mutation p.D1324N 0.22 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-EE-A2MR-06 15 57967172 57967172 G A GCOM1 Missense_Mutation p.E404K 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MR-06 15 58004349 58004349 C T POLR2M Missense_Mutation p.S309F 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 15 58253006 58253006 G A ALDH1A2 Silent p.P482P 0.12 TCGA-EE-A2MR-06 15 59494600 59494600 G A MYO1E Silent p.F541F 0.08 TCGA-EE-A2MR-06 15 59499966 59499966 G A LDHAL6B Nonsense_Mutation p.W276* 0.19 TCGA-EE-A2MR-06 15 60747314 60747314 G A NARG2 Silent p.H277H 0.08 TCGA-EE-A2MR-06 15 60970872 60970872 C T RP11-219B17.2 5'Flank 0.33 TCGA-EE-A2MR-06 15 62219479 62219479 G A VPS13C Silent p.I2109I 0.28 TCGA-EE-A2MR-06 15 62241774 62241774 G A VPS13C Missense_Mutation p.H1543Y 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 15 62254087 62254087 G A VPS13C Silent p.F1203F 0.36 TCGA-EE-A2MR-06 15 63632593 63632593 C T CA12 Missense_Mutation p.R214K 0.26 tolerated(0.16) benign(0.008) TCGA-EE-A2MR-06 15 63850313 63850313 C T USP3 Silent p.T153T 0.36 TCGA-EE-A2MR-06 15 64200735 64200735 C T DAPK2 Missense_Mutation p.R366K 0.14 tolerated(0.22) benign(0.055) TCGA-EE-A2MR-06 15 64275842 64275842 C T DAPK2 Silent p.R68R 0.27 TCGA-EE-A2MR-06 15 64701933 64701933 C T TRIP4 Nonsense_Mutation p.R317* 0.09 TCGA-EE-A2MR-06 15 65490098 65490098 G A CILP Silent p.F842F 0.09 TCGA-EE-A2MR-06 15 65491243 65491243 C T CILP Missense_Mutation p.E461K 0.23 deleterious(0.05) benign(0.005) TCGA-EE-A2MR-06 15 65622907 65622907 G A IGDCC3 Silent p.S578S 0.07 TCGA-EE-A2MR-06 15 65667616 65667616 C T IGDCC3 Silent p.R76R 0.12 TCGA-EE-A2MR-06 15 66793834 66793834 G A RPL4 Silent p.A185A 0.35 TCGA-EE-A2MR-06 15 67687746 67687746 G A IQCH Missense_Mutation p.D584N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 15 68599942 68599942 C T ITGA11 Nonsense_Mutation p.W1089* 0.11 TCGA-EE-A2MR-06 15 69561393 69561393 G A GLCE Missense_Mutation p.G555D 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 15 72021046 72021046 G A THSD4 Missense_Mutation p.E506K 0.06 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A2MR-06 15 72050249 72050249 G A THSD4 Silent p.A808A 0.18 TCGA-EE-A2MR-06 15 72189926 72189926 G A MYO9A Missense_Mutation p.R1640C 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.453) TCGA-EE-A2MR-06 15 72462185 72462185 C T GRAMD2 Intron 0.23 TCGA-EE-A2MR-06 15 72553947 72553947 G A PARP6 Missense_Mutation p.T166I 0.22 deleterious(0.01) benign(0.235) TCGA-EE-A2MR-06 15 73415021 73415021 C T NEO1 Missense_Mutation p.P202S 0.14 tolerated(0.06) benign(0.028) TCGA-EE-A2MR-06 15 74326814 74326814 T G PML Intron 0.06 TCGA-EE-A2MR-06 15 74328124 74328124 C T PML Intron 0.21 TCGA-EE-A2MR-06 15 74328125 74328125 C T PML Intron 0.21 TCGA-EE-A2MR-06 15 74426457 74426457 G A ISLR2 Silent p.A454A 0.25 TCGA-EE-A2MR-06 15 74468145 74468145 G A ISLR Missense_Mutation p.D316N 0.09 tolerated(0.53) benign(0.012) TCGA-EE-A2MR-06 15 74560742 74560742 C T CCDC33 Silent p.V163V 0.11 TCGA-EE-A2MR-06 15 74623378 74623378 C A CCDC33 Silent p.A534A 0.15 TCGA-EE-A2MR-06 15 74630352 74630352 G A CYP11A1 Silent p.F509F 0.27 TCGA-EE-A2MR-06 15 74659835 74659835 C T CYP11A1 Missense_Mutation p.R31K 0.10 tolerated(0.3) benign(0.002) TCGA-EE-A2MR-06 15 74751139 74751139 G A UBL7 Missense_Mutation p.R24W 0.25 deleterious(0.01) benign(0.425) TCGA-EE-A2MR-06 15 75014049 75014049 G A CYP1A1 Missense_Mutation p.R279W 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 15 75108815 75108815 G A LMAN1L Silent p.G126G 0.08 TCGA-EE-A2MR-06 15 75108816 75108816 G A LMAN1L Missense_Mutation p.G127R 0.08 tolerated(0.07) benign(0.076) TCGA-EE-A2MR-06 15 75651681 75651681 G A MAN2C1 Missense_Mutation p.R683C 0.10 tolerated(0.22) benign(0) TCGA-EE-A2MR-06 15 78472121 78472121 C T ACSBG1 Missense_Mutation p.D419N 0.19 tolerated(0.32) possibly_damaging(0.904) TCGA-EE-A2MR-06 15 78805750 78805750 C T HYKK Missense_Mutation p.A107V 0.14 tolerated(0.11) benign(0.007) TCGA-EE-A2MR-06 15 79324609 79324609 G A RASGRF1 Silent p.F336F 0.11 TCGA-EE-A2MR-06 15 79614347 79614347 G A TMED3 Missense_Mutation p.E149K 0.14 tolerated(0.38) benign(0.304) TCGA-EE-A2MR-06 15 80845037 80845037 C T ARNT2 Silent p.F337F 0.13 TCGA-EE-A2MR-06 15 81235344 81235344 G A KIAA1199 Missense_Mutation p.G1253E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 15 81241078 81241078 G A KIAA1199 Intron 0.10 TCGA-EE-A2MR-06 15 83451680 83451680 C T FSD2 Missense_Mutation p.G278E 0.10 tolerated(0.85) benign(0.373) TCGA-EE-A2MR-06 15 83456169 83456169 C T FSD2 5'UTR 0.08 TCGA-EE-A2MR-06 15 84287021 84287021 C T SH3GL3 Silent p.I342I 0.09 TCGA-EE-A2MR-06 15 84651029 84651029 C T ADAMTSL3 Silent p.I883I 0.26 TCGA-EE-A2MR-06 15 85326413 85326413 C T ZNF592 Silent p.F169F 0.07 TCGA-EE-A2MR-06 15 86076916 86076916 G T AKAP13 Nonsense_Mutation p.E95* 0.10 TCGA-EE-A2MR-06 15 86118489 86118489 G A AKAP13 Missense_Mutation p.E264K 0.13 tolerated(0.13) possibly_damaging(0.795) TCGA-EE-A2MR-06 15 88423558 88423558 G A NTRK3 Silent p.I759I 0.10 TCGA-EE-A2MR-06 15 88679739 88679739 C T NTRK3 Missense_Mutation p.D242N 0.15 tolerated(0.51) benign(0.223) TCGA-EE-A2MR-06 15 89002984 89002984 A T MRPL46 Missense_Mutation p.F234I 0.10 deleterious(0) possibly_damaging(0.676) TCGA-EE-A2MR-06 15 89391210 89391210 A T ACAN Missense_Mutation p.Y558F 0.12 deleterious(0) unknown(0) TCGA-EE-A2MR-06 15 89398588 89398588 G A ACAN Silent p.E924E 0.14 TCGA-EE-A2MR-06 15 89760502 89760502 C T RLBP1 Silent p.E65E 0.10 TCGA-EE-A2MR-06 15 90171980 90171980 C T KIF7 Silent p.Q1234Q 0.12 TCGA-EE-A2MR-06 15 90340826 90340826 C T ANPEP Missense_Mutation p.E713K 0.09 tolerated(0.06) benign(0.067) TCGA-EE-A2MR-06 15 90349785 90349785 G A ANPEP Silent p.S10S 0.36 TCGA-EE-A2MR-06 15 90446517 90446517 G A C15orf38-AP3S2 Silent p.A201A 0.19 TCGA-EE-A2MR-06 15 90451591 90451591 G A C15orf38-AP3S2 Silent p.F74F 0.17 TCGA-EE-A2MR-06 15 90794104 90794104 G A TTLL13 Missense_Mutation p.R81K 0.22 tolerated(0.41) benign(0.002) TCGA-EE-A2MR-06 15 91424577 91424577 C T FURIN Silent p.F618F 0.31 TCGA-EE-A2MR-06 15 91424898 91424898 C T FURIN Silent p.I725I 0.28 TCGA-EE-A2MR-06 15 91448685 91448685 C T MAN2A2 Missense_Mutation p.P113S 0.07 tolerated(0.27) benign(0.408) TCGA-EE-A2MR-06 15 91492652 91492652 C T UNC45A Missense_Mutation p.S662F 0.06 deleterious(0.04) possibly_damaging(0.615) TCGA-EE-A2MR-06 15 91809816 91809816 C T SV2B Missense_Mutation p.S338F 0.22 deleterious(0.02) benign(0.142) TCGA-EE-A2MR-06 15 91811794 91811794 G A SV2B Missense_Mutation p.M444I 0.24 tolerated(0.22) benign(0.002) TCGA-EE-A2MR-06 15 99251220 99251220 C T IGF1R Missense_Mutation p.P175L 0.09 tolerated(0.28) benign(0.011) TCGA-EE-A2MR-06 16 10788325 10788325 C T TEKT5 Missense_Mutation p.G136S 0.10 tolerated(0.18) benign(0.021) TCGA-EE-A2MR-06 16 10788753 10788753 G A TEKT5 5'UTR 0.21 TCGA-EE-A2MR-06 16 10996533 10996533 C T CIITA Missense_Mutation p.S216L 0.16 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 16 12009938 12009938 C T GSPT1 5'Flank 0.23 TCGA-EE-A2MR-06 16 12061600 12061600 G A TNFRSF17 Missense_Mutation p.E151K 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 16 1246001 1246001 C T CACNA1H Silent p.L207L 0.09 TCGA-EE-A2MR-06 16 1306629 1306629 C T TPSD1 Silent p.F65F 0.14 TCGA-EE-A2MR-06 16 1556245 1556245 C T TELO2 Missense_Mutation p.P681S 0.09 tolerated(1) benign(0) TCGA-EE-A2MR-06 16 15702250 15702250 G A KIAA0430 Silent p.L1360L 0.11 TCGA-EE-A2MR-06 16 15709696 15709696 G A KIAA0430 Missense_Mutation p.P1082S 0.09 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A2MR-06 16 15811116 15811116 C T MYH11 Silent p.K1802K 0.07 TCGA-EE-A2MR-06 16 15829336 15829336 C T MYH11 Silent p.R1138R 0.10 TCGA-EE-A2MR-06 16 15835522 15835522 G A MYH11 Missense_Mutation p.T893I 0.08 benign(0.002) TCGA-EE-A2MR-06 16 15850300 15850300 G A MYH11 Silent p.F556F 0.10 TCGA-EE-A2MR-06 16 17235223 17235223 G A XYLT1 Silent p.F458F 0.14 TCGA-EE-A2MR-06 16 18602512 18602512 G A ABCC6P1 RNA 0.13 TCGA-EE-A2MR-06 16 19049239 19049239 G A TMC7 Missense_Mutation p.R350K 0.13 tolerated(0.23) possibly_damaging(0.67) TCGA-EE-A2MR-06 16 19236136 19236136 G C SYT17 Missense_Mutation p.E402Q 0.17 tolerated(1) possibly_damaging(0.486) TCGA-EE-A2MR-06 16 19498640 19498640 C T TMC5 Silent p.T855T 0.11 TCGA-EE-A2MR-06 16 19501790 19501790 G A TMC5 Missense_Mutation p.D883N 0.08 tolerated(0.15) benign(0.049) TCGA-EE-A2MR-06 16 19746703 19746703 C T IQCK Silent p.F135F 0.13 TCGA-EE-A2MR-06 16 20043426 20043426 G A GPR139 Silent p.F231F 0.16 TCGA-EE-A2MR-06 16 20043636 20043636 G A GPR139 Silent p.I161I 0.13 TCGA-EE-A2MR-06 16 20043854 20043854 C T GPR139 Missense_Mutation p.D89N 0.15 tolerated(0.17) probably_damaging(0.997) TCGA-EE-A2MR-06 16 20335465 20335465 C T GP2 Missense_Mutation p.D70N 0.18 tolerated(0.45) benign(0.016) TCGA-EE-A2MR-06 16 2035946 2035946 C A GFER Missense_Mutation p.R179S 0.08 tolerated(0.15) benign(0.146) TCGA-EE-A2MR-06 16 20370622 20370622 T C PDILT 3'UTR 0.11 TCGA-EE-A2MR-06 16 20442358 20442358 G A ACSM5 Missense_Mutation p.G390E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 16 20480946 20480946 G A ACSM2A Silent p.V167V 0.15 TCGA-EE-A2MR-06 16 20559468 20559468 C T ACSM2B Silent p.G338G 0.17 TCGA-EE-A2MR-06 16 20648726 20648726 G A ACSM1 Silent p.F388F 0.12 TCGA-EE-A2MR-06 16 20974974 20974974 G A DNAH3 Missense_Mutation p.A3411V 0.13 tolerated(0.26) benign(0.062) TCGA-EE-A2MR-06 16 20976491 20976491 C T DNAH3 Silent p.R2905R 0.07 TCGA-EE-A2MR-06 16 20986562 20986562 C T DNAH3 Missense_Mutation p.G2751E 0.11 tolerated(0.09) benign(0.008) TCGA-EE-A2MR-06 16 20986682 20986682 G A DNAH3 Missense_Mutation p.S2711F 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 16 20998678 20998678 G A DNAH3 Silent p.F2325F 0.15 TCGA-EE-A2MR-06 16 21078726 21078726 C T DNAH3 Silent p.R1132R 0.15 TCGA-EE-A2MR-06 16 21262025 21262025 G A ANKS4B Missense_Mutation p.E380K 0.13 deleterious(0.04) possibly_damaging(0.735) TCGA-EE-A2MR-06 16 21728264 21728264 G A OTOA Missense_Mutation p.E509K 0.11 tolerated(0.41) benign(0.011) TCGA-EE-A2MR-06 16 2231248 2231248 C T CASKIN1 Silent p.Q707Q 0.24 TCGA-EE-A2MR-06 16 22360638 22360638 G A CDR2 Silent p.P156P 0.09 TCGA-EE-A2MR-06 16 22926961 22926961 C T HS3ST2 3'UTR 0.17 TCGA-EE-A2MR-06 16 23080169 23080169 C T USP31 Missense_Mutation p.R1086Q 0.10 tolerated_low_confidence(0.1) benign(0.009) TCGA-EE-A2MR-06 16 2333321 2333321 G A ABCA3 Missense_Mutation p.P1301S 0.16 tolerated(0.75) benign(0.101) TCGA-EE-A2MR-06 16 2333322 2333322 G A ABCA3 Silent p.A1300A 0.16 TCGA-EE-A2MR-06 16 2367371 2367371 C T ABCA3 Missense_Mutation p.D342N 0.11 tolerated(0.06) possibly_damaging(0.458) TCGA-EE-A2MR-06 16 24881283 24881283 C T SLC5A11 Missense_Mutation p.S90L 0.09 deleterious(0) possibly_damaging(0.543) TCGA-EE-A2MR-06 16 25258227 25258227 G A ZKSCAN2 Silent p.A430A 0.10 TCGA-EE-A2MR-06 16 27459905 27459905 G A IL21R Nonsense_Mutation p.W306* 0.21 TCGA-EE-A2MR-06 16 27475768 27475768 A G GTF3C1 Silent p.A1915A 0.10 TCGA-EE-A2MR-06 16 27475769 27475769 G A GTF3C1 Missense_Mutation p.A1915V 0.10 tolerated(0.27) benign(0.005) TCGA-EE-A2MR-06 16 27497395 27497395 G A GTF3C1 Missense_Mutation p.L1261F 0.06 tolerated(0.08) probably_damaging(0.965) TCGA-EE-A2MR-06 16 28128716 28128716 G A XPO6 Missense_Mutation p.H643Y 0.08 tolerated(0.06) benign(0.081) TCGA-EE-A2MR-06 16 28167666 28167666 G A XPO6 Missense_Mutation p.H276Y 0.11 tolerated(0.08) benign(0.057) TCGA-EE-A2MR-06 16 2816824 2816824 C T SRRM2 Missense_Mutation p.H2099Y 0.20 probably_damaging(0.985) TCGA-EE-A2MR-06 16 2816884 2816884 C T SRRM2 Missense_Mutation p.R2119C 0.06 benign(0.366) TCGA-EE-A2MR-06 16 2817587 2817587 C T SRRM2 Missense_Mutation p.A2353V 0.09 probably_damaging(0.954) TCGA-EE-A2MR-06 16 28331756 28331756 C T SBK1 Silent p.F263F 0.11 TCGA-EE-A2MR-06 16 28497722 28497722 G A CLN3 Missense_Mutation p.S208F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 16 2882008 2882008 C T ZG16B Nonsense_Mutation p.Q159* 0.11 TCGA-EE-A2MR-06 16 2882147 2882147 C T ZG16B Missense_Mutation p.P205L 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-EE-A2MR-06 16 28914725 28914725 G A ATP2A1 Missense_Mutation p.E982K 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 16 2904000 2904000 G A PRSS22 Silent p.L195L 0.09 TCGA-EE-A2MR-06 16 2905650 2905650 G A PRSS22 Silent p.L162L 0.12 TCGA-EE-A2MR-06 16 2905736 2905736 G A PRSS22 Missense_Mutation p.S133F 0.14 deleterious(0) probably_damaging(0.917) TCGA-EE-A2MR-06 16 29675046 29675046 G A SPN 5'UTR 0.08 TCGA-EE-A2MR-06 16 29891227 29891227 G A SEZ6L2 Missense_Mutation p.P511S 0.15 tolerated(0.19) benign(0.326) TCGA-EE-A2MR-06 16 29896970 29896970 G A SEZ6L2 Missense_Mutation p.L437F 0.09 tolerated(0.46) benign(0.134) TCGA-EE-A2MR-06 16 29912638 29912638 C T ASPHD1 Missense_Mutation p.R116C 0.07 tolerated(0.05) benign(0.064) TCGA-EE-A2MR-06 16 29913023 29913023 C T ASPHD1 Missense_Mutation p.P244L 0.19 tolerated(0.41) benign(0.007) TCGA-EE-A2MR-06 16 30080817 30080817 C T ALDOA Intron 0.10 TCGA-EE-A2MR-06 16 30490433 30490433 C T ITGAL Nonsense_Mutation p.R117* 0.22 TCGA-EE-A2MR-06 16 30736210 30736210 C T SRCAP Missense_Mutation p.S1822F 0.14 probably_damaging(0.962) TCGA-EE-A2MR-06 16 30745866 30745866 C T SRCAP Missense_Mutation p.S2220L 0.08 benign(0.255) TCGA-EE-A2MR-06 16 30750002 30750002 C T SRCAP Missense_Mutation p.P2881S 0.19 unknown(0) TCGA-EE-A2MR-06 16 31072347 31072347 G A ZNF668 3'UTR 0.11 TCGA-EE-A2MR-06 16 3119409 3119409 C T IL32 3'UTR 0.11 TCGA-EE-A2MR-06 16 31200472 31200472 C T FUS Silent p.I287I 0.12 TCGA-EE-A2MR-06 16 31418929 31418929 G A ITGAD Silent p.L266L 0.10 TCGA-EE-A2MR-06 16 31498897 31498897 G A SLC5A2 Silent p.L234L 0.10 TCGA-EE-A2MR-06 16 31539475 31539475 G A AHSP Silent p.K5K 0.09 TCGA-EE-A2MR-06 16 332476 332476 G A ARHGDIG Missense_Mutation p.E142K 0.29 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2MR-06 16 3367222 3367222 C T ZNF75A Nonsense_Mutation p.Q82* 0.15 TCGA-EE-A2MR-06 16 3405943 3405943 G A OR2C1 Translation_Start_Site p.M1? 0.08 deleterious(0.01) probably_damaging(0.914) TCGA-EE-A2MR-06 16 3406279 3406279 C T OR2C1 Silent p.I113I 0.10 TCGA-EE-A2MR-06 16 343592 343592 G A AXIN1 Silent p.T694T 0.10 TCGA-EE-A2MR-06 16 3611705 3611705 G A NLRC3 Silent p.I718I 0.09 TCGA-EE-A2MR-06 16 3633422 3633422 G A SLX4 Missense_Mutation p.S1610F 0.13 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MR-06 16 3640520 3640520 G A SLX4 Missense_Mutation p.P1040L 0.06 tolerated(0.12) benign(0.009) TCGA-EE-A2MR-06 16 3658900 3658900 G A SLX4 Silent p.A22A 0.09 TCGA-EE-A2MR-06 16 3779715 3779715 G A CREBBP Missense_Mutation p.S1778L 0.16 unknown(0) TCGA-EE-A2MR-06 16 3900705 3900705 G A CREBBP Missense_Mutation p.P131S 0.09 benign(0.024) TCGA-EE-A2MR-06 16 4043411 4043411 G A ADCY9 Missense_Mutation p.T662I 0.10 tolerated(0.18) benign(0.01) TCGA-EE-A2MR-06 16 419071 419071 G C MRPL28 Silent p.L146L 0.14 TCGA-EE-A2MR-06 16 4408370 4408370 G A CORO7 Missense_Mutation p.R819W 0.10 deleterious(0) possibly_damaging(0.844) TCGA-EE-A2MR-06 16 4408371 4408371 G T CORO7 Silent p.V818V 0.10 TCGA-EE-A2MR-06 16 47630437 47630437 T A PHKB Missense_Mutation p.L453H 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 16 47703278 47703278 C T PHKB Silent p.I860I 0.11 TCGA-EE-A2MR-06 16 48138108 48138108 G A ABCC12 Missense_Mutation p.P949S 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 16 48210901 48210901 G A ABCC11 Missense_Mutation p.L1158F 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 16 48258241 48258241 G A ABCC11 Silent p.F165F 0.13 TCGA-EE-A2MR-06 16 4925047 4925047 C T UBN1 Missense_Mutation p.S879F 0.09 deleterious_low_confidence(0) benign(0.429) TCGA-EE-A2MR-06 16 4952413 4952413 C T PPL Silent p.E144E 0.09 TCGA-EE-A2MR-06 16 49671056 49671056 C T ZNF423 Silent p.E669E 0.08 TCGA-EE-A2MR-06 16 49671596 49671596 G A ZNF423 Silent p.F489F 0.15 TCGA-EE-A2MR-06 16 50759401 50759401 C T NOD2 Silent p.L962L 0.10 TCGA-EE-A2MR-06 16 51173425 51173425 G A SALL1 Missense_Mutation p.S903F 0.08 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A2MR-06 16 51174515 51174515 T C SALL1 Missense_Mutation p.S540G 0.10 deleterious(0) benign(0.206) TCGA-EE-A2MR-06 16 51174684 51174684 C T SALL1 Silent p.G483G 0.13 TCGA-EE-A2MR-06 16 5125427 5125427 C T ALG1 Silent p.F143F 0.09 TCGA-EE-A2MR-06 16 52497915 52497915 G A TOX3 Silent p.L113L 0.14 TCGA-EE-A2MR-06 16 56535370 56535370 G A BBS2 Missense_Mutation p.R374W 0.10 tolerated(0.19) benign(0.001) TCGA-EE-A2MR-06 16 56700746 56700746 T C MT1G 3'UTR 0.16 TCGA-EE-A2MR-06 16 56700771 56700771 G A MT1G 3'UTR 0.12 TCGA-EE-A2MR-06 16 56917964 56917964 G A SLC12A3 Nonsense_Mutation p.W558* 0.14 TCGA-EE-A2MR-06 16 56928468 56928468 C T SLC12A3 Silent p.L858L 0.19 TCGA-EE-A2MR-06 16 56977170 56977170 C T HERPUD1 Missense_Mutation p.L382F 0.07 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 16 57012110 57012110 G A CETP Silent p.V363V 0.09 TCGA-EE-A2MR-06 16 57062238 57062238 C T NLRC5 Silent p.A728A 0.11 TCGA-EE-A2MR-06 16 570755 570755 G A RAB11FIP3 Silent p.E729E 0.10 TCGA-EE-A2MR-06 16 57473199 57473199 G A CIAPIN1 Missense_Mutation p.P69S 0.12 tolerated(0.07) benign(0.054) TCGA-EE-A2MR-06 16 57752293 57752293 G A CCDC135 Nonsense_Mutation p.W371* 0.08 TCGA-EE-A2MR-06 16 57756673 57756673 G A CCDC135 Missense_Mutation p.R443K 0.09 tolerated(1) benign(0.005) TCGA-EE-A2MR-06 16 57756955 57756955 G A CCDC135 Missense_Mutation p.E484K 0.08 tolerated(0.23) benign(0.05) TCGA-EE-A2MR-06 16 57992319 57992319 C T CNGB1 Missense_Mutation p.E278K 0.11 tolerated_low_confidence(0.07) benign(0.177) TCGA-EE-A2MR-06 16 58011910 58011910 G A TEPP Missense_Mutation p.E119K 0.09 deleterious(0.01) benign(0.394) TCGA-EE-A2MR-06 16 58288049 58288049 C T CCDC113 Silent p.L126L 0.08 TCGA-EE-A2MR-06 16 65006823 65006823 G A CDH11 Silent p.V458V 0.11 TCGA-EE-A2MR-06 16 66420802 66420802 G A CDH5 Missense_Mutation p.D101N 0.11 tolerated(0.25) benign(0.203) TCGA-EE-A2MR-06 16 66997830 66997830 C T CES3 Silent p.G184G 0.10 TCGA-EE-A2MR-06 16 67168357 67168357 C T C16orf70 Silent p.R216R 0.10 TCGA-EE-A2MR-06 16 67691467 67691467 A G RLTPR 3'UTR 0.18 TCGA-EE-A2MR-06 16 67861663 67861663 G A TSNAXIP1 Missense_Mutation p.E582K 0.11 tolerated(0.14) benign(0.009) TCGA-EE-A2MR-06 16 68961554 68961554 C T TANGO6 Silent p.I737I 0.10 TCGA-EE-A2MR-06 16 70154551 70154551 C T PDPR Silent p.I52I 0.09 TCGA-EE-A2MR-06 16 70497632 70497632 C T FUK Silent p.A63A 0.25 TCGA-EE-A2MR-06 16 70534928 70534928 G A COG4 Silent p.F376F 0.12 TCGA-EE-A2MR-06 16 70841887 70841887 C T HYDIN Missense_Mutation p.E4988K 0.13 possibly_damaging(0.801) TCGA-EE-A2MR-06 16 70891683 70891683 G A HYDIN Silent p.L4074L 0.14 TCGA-EE-A2MR-06 16 71606176 71606176 C T TAT Missense_Mutation p.E207K 0.09 tolerated(0.06) benign(0.021) TCGA-EE-A2MR-06 16 71674560 71674560 G A MARVELD3 Missense_Mutation p.G288E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 16 72110765 72110765 G A HPR Missense_Mutation p.E278K 0.12 tolerated(0.06) benign(0.013) TCGA-EE-A2MR-06 16 72163011 72163011 C T PMFBP1 Missense_Mutation p.G635E 0.08 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 16 72829477 72829477 G A ZFHX3 Silent p.S2368S 0.10 TCGA-EE-A2MR-06 16 72992375 72992375 G A ZFHX3 Missense_Mutation p.S557F 0.09 possibly_damaging(0.86) TCGA-EE-A2MR-06 16 74497267 74497267 G A GLG1 Silent p.I926I 0.10 TCGA-EE-A2MR-06 16 74760214 74760214 G A FA2H Silent p.I174I 0.15 TCGA-EE-A2MR-06 16 75238128 75238128 G A CTRB2 Silent p.T241T 0.12 TCGA-EE-A2MR-06 16 76486467 76486467 G A CNTNAP4 Silent p.R305R 0.10 TCGA-EE-A2MR-06 16 7680638 7680638 G A RBFOX1 Missense_Mutation p.G257E 0.10 tolerated(0.42) probably_damaging(0.924) TCGA-EE-A2MR-06 16 78064421 78064421 G A CLEC3A Missense_Mutation p.E102K 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 16 81934316 81934316 G A PLCG2 Silent p.T431T 0.09 TCGA-EE-A2MR-06 16 81944272 81944272 C T PLCG2 Silent p.F627F 0.13 TCGA-EE-A2MR-06 16 81969923 81969923 G A PLCG2 Missense_Mutation p.D998N 0.10 tolerated(0.29) probably_damaging(1) TCGA-EE-A2MR-06 16 83781746 83781746 G A CDH13 Silent p.L571L 0.11 TCGA-EE-A2MR-06 16 83948701 83948701 C T MLYCD Silent p.I363I 0.10 TCGA-EE-A2MR-06 16 84067056 84067056 G A SLC38A8 Missense_Mutation p.S136F 0.10 deleterious(0.03) benign(0.369) TCGA-EE-A2MR-06 16 84108247 84108247 G A MBTPS1 Silent p.V516V 0.16 TCGA-EE-A2MR-06 16 84163235 84163235 G A HSDL1 Missense_Mutation p.S271L 0.10 deleterious(0.01) possibly_damaging(0.702) TCGA-EE-A2MR-06 16 84189347 84189347 C T DNAAF1 Missense_Mutation p.P245L 0.17 deleterious(0) benign(0.343) TCGA-EE-A2MR-06 16 84216904 84216904 G A TAF1C Silent p.A118A 0.15 TCGA-EE-A2MR-06 16 84270480 84270480 C T KCNG4 Missense_Mutation p.M204I 0.12 tolerated(0.06) benign(0.032) TCGA-EE-A2MR-06 16 84459396 84459396 G A ATP2C2 Silent p.T325T 0.07 TCGA-EE-A2MR-06 16 84488517 84488517 G A ATP2C2 Missense_Mutation p.G692R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 16 84911069 84911069 C T CRISPLD2 Silent p.T394T 0.19 TCGA-EE-A2MR-06 16 88722522 88722522 G A MVD Silent p.L198L 0.12 TCGA-EE-A2MR-06 16 88909200 88909200 G A GALNS Missense_Mutation p.S53F 0.15 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MR-06 16 89357214 89357214 G A ANKRD11 Silent p.P140P 0.09 TCGA-EE-A2MR-06 16 89357215 89357215 G A ANKRD11 Missense_Mutation p.P140L 0.09 probably_damaging(0.981) TCGA-EE-A2MR-06 16 89703313 89703313 C T DPEP1 Silent p.P187P 0.09 TCGA-EE-A2MR-06 16 89789191 89789191 T A ZNF276 Missense_Mutation p.F153Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 16 89924777 89924777 C T SPIRE2 Silent p.A378A 0.13 TCGA-EE-A2MR-06 16 90141871 90141871 G A PRDM7 Silent p.A27A 0.12 TCGA-EE-A2MR-06 16 97479 97479 G A POLR3K Missense_Mutation p.T93I 0.15 tolerated(0.1) benign(0.03) TCGA-EE-A2MR-06 16 9857944 9857944 C T GRIN2A Missense_Mutation p.D1153N 0.11 deleterious(0.02) possibly_damaging(0.606) TCGA-EE-A2MR-06 17 10209806 10209806 C T MYH13 Silent p.G1812G 0.08 TCGA-EE-A2MR-06 17 10216581 10216581 C T MYH13 Missense_Mutation p.A1359T 0.12 deleterious(0.03) benign(0.089) TCGA-EE-A2MR-06 17 10301820 10301820 C T MYH8 Silent p.Q1373Q 0.08 TCGA-EE-A2MR-06 17 10406151 10406151 C T MYH1 Silent p.E1005E 0.11 TCGA-EE-A2MR-06 17 10408573 10408573 C T MYH1 Missense_Mutation p.R781Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 17 10428187 10428187 G A MYH2 Missense_Mutation p.L1620F 0.09 deleterious(0.04) benign(0.01) TCGA-EE-A2MR-06 17 10432220 10432220 G A MYH2 Silent p.F1177F 0.09 TCGA-EE-A2MR-06 17 10432704 10432704 G A MYH2 Missense_Mutation p.S1071F 0.10 deleterious(0) possibly_damaging(0.779) TCGA-EE-A2MR-06 17 10438429 10438429 C T MYH2 Missense_Mutation p.G714E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 10543375 10543375 G A MYH3 Silent p.L874L 0.10 TCGA-EE-A2MR-06 17 11511593 11511593 C T DNAH9 Missense_Mutation p.P189S 0.08 possibly_damaging(0.907) TCGA-EE-A2MR-06 17 1183455 1183455 G A TUSC5 Missense_Mutation p.E54K 0.08 deleterious(0.01) possibly_damaging(0.81) TCGA-EE-A2MR-06 17 1183600 1183600 G A TUSC5 Missense_Mutation p.R102K 0.10 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 17 12655783 12655783 C T MYOCD Missense_Mutation p.T393I 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 1537982 1537982 C T SCARF1 3'UTR 0.09 TCGA-EE-A2MR-06 17 15517241 15517241 A T RP11-385D13.1 Silent p.V569V 0.11 TCGA-EE-A2MR-06 17 1577738 1577738 G A PRPF8 Silent p.F1099F 0.12 TCGA-EE-A2MR-06 17 1637215 1637215 C T WDR81 Silent p.S1628S 0.11 TCGA-EE-A2MR-06 17 1651891 1651891 G A SERPINF2 Splice_Site p.X239_splice 0.17 TCGA-EE-A2MR-06 17 1673174 1673174 C G SERPINF1 Missense_Mutation p.A38G 0.08 tolerated(0.37) benign(0) TCGA-EE-A2MR-06 17 17380346 17380346 C T MED9 5'UTR 0.09 TCGA-EE-A2MR-06 17 17699768 17699768 C T RAI1 Missense_Mutation p.P1169L 0.17 deleterious(0.03) benign(0.008) TCGA-EE-A2MR-06 17 17880975 17880975 C T LRRC48 Silent p.A21A 0.21 TCGA-EE-A2MR-06 17 18022636 18022636 C T MYO15A Silent p.F174F 0.21 TCGA-EE-A2MR-06 17 18022835 18022835 G A MYO15A Missense_Mutation p.D241N 0.14 possibly_damaging(0.85) TCGA-EE-A2MR-06 17 20799262 20799262 C T CCDC144NL Silent p.R24R 0.11 TCGA-EE-A2MR-06 17 2089975 2089975 G A SMG6 Missense_Mutation p.S1046F 0.14 tolerated(0.1) probably_damaging(0.937) TCGA-EE-A2MR-06 17 20907598 20907598 G A USP22 Silent p.I484I 0.10 TCGA-EE-A2MR-06 17 21086927 21086927 C T DHRS7B Silent p.Y110Y 0.11 TCGA-EE-A2MR-06 17 21086928 21086928 T A DHRS7B Missense_Mutation p.L111M 0.11 tolerated(0.2) benign(0.016) TCGA-EE-A2MR-06 17 2570417 2570417 G A PAFAH1B1 Silent p.R108R 0.15 TCGA-EE-A2MR-06 17 26105947 26105947 G A NOS2 Silent p.V380V 0.19 TCGA-EE-A2MR-06 17 26495639 26495639 C T NLK Silent p.L335L 0.10 TCGA-EE-A2MR-06 17 26817461 26817461 C T SLC13A2 Missense_Mutation p.S123F 0.10 deleterious(0.01) benign(0.161) TCGA-EE-A2MR-06 17 26818635 26818635 C T SLC13A2 Missense_Mutation p.S301L 0.09 deleterious(0.03) possibly_damaging(0.523) TCGA-EE-A2MR-06 17 26824315 26824315 G A SLC13A2 3'UTR 0.15 TCGA-EE-A2MR-06 17 26861902 26861902 C T FOXN1 Missense_Mutation p.P438L 0.19 deleterious(0.01) benign(0.309) TCGA-EE-A2MR-06 17 26862034 26862034 G A FOXN1 Missense_Mutation p.R482Q 0.16 tolerated(0.36) benign(0.015) TCGA-EE-A2MR-06 17 26864335 26864335 G A FOXN1 Missense_Mutation p.D610N 0.16 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MR-06 17 26906832 26906832 A G SPAG5 Silent p.L941L 0.17 TCGA-EE-A2MR-06 17 26910556 26910556 G A RP11-192H23.4 Silent p.L291L 0.12 TCGA-EE-A2MR-06 17 27005189 27005189 C T SUPT6H Silent p.F365F 0.09 TCGA-EE-A2MR-06 17 27064861 27064861 C T NEK8 Missense_Mutation p.P305L 0.07 tolerated(0.38) benign(0) TCGA-EE-A2MR-06 17 27185805 27185807 TGT CG ERAL1 Frame_Shift_Del p.L308Sfs*4 0.10 TCGA-EE-A2MR-06 17 27244400 27244400 G A PHF12 Missense_Mutation p.S346L 0.09 deleterious(0.05) benign(0.014) TCGA-EE-A2MR-06 17 27371943 27371943 G A PIPOX Missense_Mutation p.E61K 0.13 tolerated(0.05) possibly_damaging(0.512) TCGA-EE-A2MR-06 17 27381694 27381694 C T PIPOX Silent p.Y264Y 0.18 TCGA-EE-A2MR-06 17 2901637 2901637 C T RAP1GAP2 Silent p.V389V 0.14 TCGA-EE-A2MR-06 17 29253878 29253878 G A ADAP2 Missense_Mutation p.A87T 0.15 tolerated(0.1) benign(0.031) TCGA-EE-A2MR-06 17 29858712 29858712 C T RAB11FIP4 Silent p.L626L 0.19 TCGA-EE-A2MR-06 17 29902513 29902513 C T AC003101.1 Intron 0.11 TCGA-EE-A2MR-06 17 30179858 30179858 A G COPRS Silent p.L120L 0.10 TCGA-EE-A2MR-06 17 3030767 3030767 G A OR1G1 Missense_Mutation p.L27F 0.10 tolerated(0.08) benign(0.014) TCGA-EE-A2MR-06 17 30348964 30348964 C T LRRC37B Nonsense_Mutation p.Q267* 0.17 TCGA-EE-A2MR-06 17 31343015 31343015 C T ASIC2 Missense_Mutation p.D522N 0.14 tolerated(0.19) benign(0.159) TCGA-EE-A2MR-06 17 3324817 3324817 C T OR3A3 Missense_Mutation p.S319L 0.19 tolerated(0.14) benign(0.005) TCGA-EE-A2MR-06 17 33520547 33520547 C T SLC35G3 Silent p.G260G 0.16 TCGA-EE-A2MR-06 17 33520712 33520712 C T SLC35G3 Silent p.L205L 0.20 TCGA-EE-A2MR-06 17 33932734 33932734 C T AP2B1 Missense_Mutation p.P52S 0.09 tolerated(0.07) benign(0.352) TCGA-EE-A2MR-06 17 34073134 34073134 G A GAS2L2 Missense_Mutation p.S461F 0.09 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A2MR-06 17 34074128 34074128 C T GAS2L2 Missense_Mutation p.R331Q 0.20 tolerated(0.06) benign(0.075) TCGA-EE-A2MR-06 17 34171515 34171515 C T TAF15 Silent p.G404G 0.08 TCGA-EE-A2MR-06 17 34191814 34191814 C T C17orf66 Missense_Mutation p.R134Q 0.09 tolerated(0.52) benign(0.037) TCGA-EE-A2MR-06 17 34340846 34340846 G A CCL23 Silent p.I80I 0.22 TCGA-EE-A2MR-06 17 3524632 3524632 G A SHPK Missense_Mutation p.S241F 0.10 tolerated(0.71) benign(0.02) TCGA-EE-A2MR-06 17 35538187 35538187 G A ACACA Silent p.S1629S 0.20 TCGA-EE-A2MR-06 17 36487411 36487411 C T GPR179 Missense_Mutation p.E681K 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 17 36499563 36499563 G A GPR179 Missense_Mutation p.P37L 0.16 tolerated(0.31) benign(0.012) TCGA-EE-A2MR-06 17 36521269 36521269 C T SOCS7 Missense_Mutation p.P346L 0.14 tolerated(0.45) benign(0.011) TCGA-EE-A2MR-06 17 3661086 3661086 C T ITGAE Missense_Mutation p.D312N 0.06 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 17 37296031 37296031 C T PLXDC1 Nonsense_Mutation p.W44* 0.19 TCGA-EE-A2MR-06 17 37786251 37786251 C T PPP1R1B Silent p.L64L 0.15 TCGA-EE-A2MR-06 17 37898851 37898851 C T GRB7 Missense_Mutation p.S86F 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 17 37898852 37898852 C T GRB7 Silent p.S86S 0.08 TCGA-EE-A2MR-06 17 37922621 37922621 C T IKZF3 Missense_Mutation p.E318K 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 17 37949026 37949026 G A IKZF3 Silent p.F108F 0.12 TCGA-EE-A2MR-06 17 37985721 37985721 C T IKZF3 Missense_Mutation p.D28N 0.17 deleterious(0.02) benign(0.019) TCGA-EE-A2MR-06 17 3801321 3801321 C T P2RX1 Silent p.E372E 0.08 TCGA-EE-A2MR-06 17 38027073 38027073 G A ZPBP2 Splice_Site p.X82_splice 0.14 TCGA-EE-A2MR-06 17 38126810 38126810 G A GSDMA Silent p.V156V 0.33 TCGA-EE-A2MR-06 17 38131251 38131251 C T GSDMA Silent p.F335F 0.09 TCGA-EE-A2MR-06 17 3844561 3844561 G A ATP2A3 Missense_Mutation p.P602S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 17 38568006 38568006 G A TOP2A Missense_Mutation p.S285F 0.24 deleterious(0.01) benign(0.068) TCGA-EE-A2MR-06 17 38652341 38652341 C T TNS4 Missense_Mutation p.D113N 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 17 38906672 38906672 C T KRT25 Missense_Mutation p.E379K 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 38953468 38953468 C T KRT28 Silent p.G252G 0.11 TCGA-EE-A2MR-06 17 3920960 3920960 G A ZZEF1 Missense_Mutation p.S2569F 0.10 deleterious(0.01) benign(0.397) TCGA-EE-A2MR-06 17 39334189 39334189 G A KRTAP4-2 Silent p.C76C 0.11 TCGA-EE-A2MR-06 17 39334336 39334336 C T KRTAP4-2 Silent p.Q27Q 0.19 TCGA-EE-A2MR-06 17 39389223 39389223 C T KRTAP9-3 Missense_Mutation p.S157F 0.15 deleterious(0.01) benign(0.2) TCGA-EE-A2MR-06 17 39503339 39503339 C T KRT33A Missense_Mutation p.E242K 0.13 deleterious(0.01) benign(0.077) TCGA-EE-A2MR-06 17 39553626 39553626 C T KRT31 Missense_Mutation p.E56K 0.17 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MR-06 17 39623286 39623286 C T KRT32 Missense_Mutation p.E98K 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MR-06 17 39637053 39637053 C T KRT35 Silent p.E99E 0.14 TCGA-EE-A2MR-06 17 39643659 39643659 C T KRT36 Missense_Mutation p.E311K 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MR-06 17 39643881 39643881 C T KRT36 Missense_Mutation p.E270K 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 17 39645853 39645853 G A KRT36 Silent p.S88S 0.29 TCGA-EE-A2MR-06 17 39645993 39645993 G A KRT36 Missense_Mutation p.L42F 0.14 tolerated(0.14) benign(0.012) TCGA-EE-A2MR-06 17 39671762 39671762 G A KRT15 Silent p.I403I 0.13 TCGA-EE-A2MR-06 17 39674981 39674981 C T KRT15 Silent p.G33G 0.08 TCGA-EE-A2MR-06 17 39914689 39914689 C T JUP Missense_Mutation p.E579K 0.17 tolerated(0.42) benign(0.052) TCGA-EE-A2MR-06 17 40011334 40011334 G A KLHL11 Missense_Mutation p.S262F 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MR-06 17 4013104 4013104 G A ZZEF1 Missense_Mutation p.H374Y 0.09 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MR-06 17 40269426 40269426 G A KAT2A Silent p.I539I 0.08 TCGA-EE-A2MR-06 17 40280676 40280676 G A RAB5C Silent p.I136I 0.09 TCGA-EE-A2MR-06 17 40474489 40474489 C T STAT3 Missense_Mutation p.E638K 0.07 tolerated(0.09) possibly_damaging(0.885) TCGA-EE-A2MR-06 17 40716744 40716744 C T COASY Silent p.P384P 0.14 TCGA-EE-A2MR-06 17 40835847 40835847 G A CNTNAP1 Missense_Mutation p.D26N 0.12 tolerated(0.17) benign(0) TCGA-EE-A2MR-06 17 40858195 40858195 G A EZH1 Missense_Mutation p.R557C 0.14 deleterious(0) possibly_damaging(0.72) TCGA-EE-A2MR-06 17 40933060 40933060 C T WNK4 Missense_Mutation p.P115L 0.24 tolerated_low_confidence(0.26) unknown(0) TCGA-EE-A2MR-06 17 40962770 40962770 G A BECN1 3'UTR 0.09 TCGA-EE-A2MR-06 17 41063293 41063293 C T G6PC Silent p.V308V 0.14 TCGA-EE-A2MR-06 17 41170058 41170058 G A VAT1 Missense_Mutation p.P254L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 41244925 41244925 G A BRCA1 Missense_Mutation p.P875S 0.10 tolerated(0.06) benign(0.297) TCGA-EE-A2MR-06 17 41369871 41369871 C T TMEM106A 3'UTR 0.10 TCGA-EE-A2MR-06 17 41738630 41738630 G A MEOX1 Silent p.S91S 0.14 TCGA-EE-A2MR-06 17 42273443 42273443 G A ATXN7L3 Missense_Mutation p.P168L 0.10 deleterious(0.05) benign(0.117) TCGA-EE-A2MR-06 17 42293036 42293036 G A UBTF Missense_Mutation p.P154S 0.13 tolerated(0.12) probably_damaging(0.99) TCGA-EE-A2MR-06 17 42333147 42333147 C T SLC4A1 Missense_Mutation p.G565D 0.09 tolerated(0.26) benign(0.005) TCGA-EE-A2MR-06 17 42333148 42333148 C T SLC4A1 Missense_Mutation p.G565S 0.09 tolerated(0.36) benign(0.009) TCGA-EE-A2MR-06 17 42335538 42335538 C T SLC4A1 Silent p.G366G 0.10 TCGA-EE-A2MR-06 17 42474955 42474955 G A GPATCH8 Missense_Mutation p.P1497L 0.18 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MR-06 17 42882354 42882354 G A GJC1 Missense_Mutation p.P278S 0.17 tolerated(0.15) probably_damaging(0.992) TCGA-EE-A2MR-06 17 43481001 43481001 G A ARHGAP27 Missense_Mutation p.S200L 0.11 tolerated(0.06) benign(0.119) TCGA-EE-A2MR-06 17 4356465 4356465 C T SPNS3 Missense_Mutation p.L360F 0.06 tolerated(0.39) possibly_damaging(0.461) TCGA-EE-A2MR-06 17 44039743 44039743 C T MAPT Missense_Mutation p.H14Y 0.26 deleterious(0) possibly_damaging(0.823) TCGA-EE-A2MR-06 17 44067273 44067273 G A MAPT Silent p.L404L 0.15 TCGA-EE-A2MR-06 17 4442153 4442153 G A SPNS2 3'UTR 0.13 TCGA-EE-A2MR-06 17 4457550 4457550 G A MYBBP1A Silent p.L106L 0.16 TCGA-EE-A2MR-06 17 44851070 44851070 C T WNT3 Missense_Mutation p.D96N 0.17 tolerated(0.77) benign(0.004) TCGA-EE-A2MR-06 17 4496226 4496226 C T SMTNL2 Missense_Mutation p.P164S 0.11 tolerated(0.53) benign(0.007) TCGA-EE-A2MR-06 17 4542357 4542357 C T ALOX15 Silent p.R136R 0.09 TCGA-EE-A2MR-06 17 45456599 45456599 G A EFCAB13 Missense_Mutation p.R521Q 0.15 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 17 45822518 45822518 G A TBX21 Missense_Mutation p.G465E 0.15 tolerated(0.8) benign(0.016) TCGA-EE-A2MR-06 17 45895749 45895749 G A OSBPL7 Missense_Mutation p.P162S 0.08 tolerated(0.26) benign(0.001) TCGA-EE-A2MR-06 17 46002882 46002882 C T SP2 Silent p.L572L 0.21 TCGA-EE-A2MR-06 17 46054169 46054169 T C CDK5RAP3 Missense_Mutation p.F297S 0.14 tolerated(1) benign(0) TCGA-EE-A2MR-06 17 46110610 46110610 G A COPZ2 Silent p.F107F 0.23 TCGA-EE-A2MR-06 17 46190722 46190722 C T SNX11 Silent p.F63F 0.09 TCGA-EE-A2MR-06 17 4643876 4643876 C T ZMYND15 Silent p.F11F 0.12 TCGA-EE-A2MR-06 17 4711405 4711405 C T PLD2 Missense_Mutation p.S79F 0.12 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A2MR-06 17 47122386 47122386 C T IGF2BP1 Missense_Mutation p.R452C 0.19 deleterious(0.03) probably_damaging(0.975) TCGA-EE-A2MR-06 17 4720326 4720326 C T PLD2 Silent p.F559F 0.09 TCGA-EE-A2MR-06 17 47299475 47299475 G A ABI3 Silent p.L275L 0.11 TCGA-EE-A2MR-06 17 48050405 48050405 C T DLX4 Intron 0.11 TCGA-EE-A2MR-06 17 48212929 48212929 G A PPP1R9B Missense_Mutation p.L795F 0.24 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 17 48245069 48245069 C A SGCA Missense_Mutation p.P95Q 0.10 tolerated(0.12) benign(0.03) TCGA-EE-A2MR-06 17 48262926 48262926 G A COL1A1 Silent p.P1444P 0.18 TCGA-EE-A2MR-06 17 48264261 48264261 G A COL1A1 Missense_Mutation p.P1185L 0.21 unknown(0) TCGA-EE-A2MR-06 17 48266794 48266794 G A COL1A1 Missense_Mutation p.P925S 0.11 unknown(0) TCGA-EE-A2MR-06 17 48277183 48277183 C T COL1A1 Missense_Mutation p.E77K 0.09 unknown(0) TCGA-EE-A2MR-06 17 48602350 48602350 C T MYCBPAP Missense_Mutation p.T626I 0.17 deleterious(0.01) possibly_damaging(0.453) TCGA-EE-A2MR-06 17 4863178 4863178 G A SPAG7 Nonsense_Mutation p.Q151* 0.14 TCGA-EE-A2MR-06 17 48680181 48680181 G A CACNA1G Missense_Mutation p.E1306K 0.10 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A2MR-06 17 48680201 48680201 C T CACNA1G Silent p.L1312L 0.09 TCGA-EE-A2MR-06 17 48704023 48704023 C T CACNA1G Missense_Mutation p.P2349S 0.13 tolerated_low_confidence(0.12) benign(0.005) TCGA-EE-A2MR-06 17 48738468 48738468 C G ABCC3 Missense_Mutation p.L331V 0.11 tolerated(0.28) probably_damaging(0.968) TCGA-EE-A2MR-06 17 4905816 4905816 C T KIF1C Missense_Mutation p.R163W 0.08 deleterious(0) possibly_damaging(0.523) TCGA-EE-A2MR-06 17 4936589 4936589 G A SLC52A1 Silent p.P367P 0.09 TCGA-EE-A2MR-06 17 5039181 5039181 G A USP6 Missense_Mutation p.A208T 0.10 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-EE-A2MR-06 17 51901193 51901193 G A KIF2B Missense_Mutation p.D267N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 51901748 51901748 G A KIF2B Missense_Mutation p.E452K 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 17 53392718 53392718 C T HLF Silent p.D194D 0.18 TCGA-EE-A2MR-06 17 5353595 5353595 G A DHX33 Silent p.F552F 0.09 TCGA-EE-A2MR-06 17 5445203 5445203 C T NLRP1 Silent p.Q891Q 0.18 TCGA-EE-A2MR-06 17 5461798 5461798 C T NLRP1 Missense_Mutation p.E740K 0.09 tolerated(0.39) benign(0.017) TCGA-EE-A2MR-06 17 55058509 55058509 A T SCPEP1 Missense_Mutation p.D48V 0.13 tolerated(0.06) possibly_damaging(0.516) TCGA-EE-A2MR-06 17 55956990 55956990 G A CUEDC1 Missense_Mutation p.P149L 0.18 tolerated(0.1) probably_damaging(0.926) TCGA-EE-A2MR-06 17 56232607 56232607 C T OR4D1 Silent p.F31F 0.15 TCGA-EE-A2MR-06 17 56332314 56332314 C T LPO Silent p.I416I 0.24 TCGA-EE-A2MR-06 17 56345271 56345271 G A LPO Nonsense_Mutation p.W685* 0.16 TCGA-EE-A2MR-06 17 56355349 56355349 G A MPO Missense_Mutation p.P348L 0.09 tolerated(0.19) benign(0.043) TCGA-EE-A2MR-06 17 56382511 56382511 C T BZRAP1 Missense_Mutation p.G1819S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 56386398 56386398 G A BZRAP1 Missense_Mutation p.P1412L 0.16 tolerated(0.12) benign(0.018) TCGA-EE-A2MR-06 17 56388345 56388345 G A BZRAP1 Missense_Mutation p.S1104L 0.20 tolerated(0.16) benign(0.002) TCGA-EE-A2MR-06 17 56572533 56572533 G A MTMR4 Silent p.V990V 0.13 TCGA-EE-A2MR-06 17 56650616 56650616 G A TEX14 Missense_Mutation p.S1192F 0.10 tolerated(0.65) benign(0.03) TCGA-EE-A2MR-06 17 57158499 57158499 G A TRIM37 Missense_Mutation p.R151C 0.18 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 17 57279004 57279004 C T PRR11 3'UTR 0.15 TCGA-EE-A2MR-06 17 57290128 57290128 C T SMG8 Silent p.I648I 0.10 TCGA-EE-A2MR-06 17 57290769 57290769 C T SMG8 Missense_Mutation p.S862F 0.13 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MR-06 17 58137347 58137347 G A HEATR6 Silent p.S509S 0.20 TCGA-EE-A2MR-06 17 60042398 60042398 G A MED13 Missense_Mutation p.P1605S 0.18 tolerated(0.39) probably_damaging(0.979) TCGA-EE-A2MR-06 17 60042544 60042544 G A MED13 Missense_Mutation p.P1556L 0.12 deleterious(0.01) benign(0.016) TCGA-EE-A2MR-06 17 60351235 60351235 C T TBC1D3P2 RNA 0.09 TCGA-EE-A2MR-06 17 60484011 60484011 T G EFCAB3 Missense_Mutation p.F272C 0.25 tolerated(0.13) possibly_damaging(0.789) TCGA-EE-A2MR-06 17 60501239 60501239 G A METTL2A 5'UTR 0.29 TCGA-EE-A2MR-06 17 60743815 60743815 G A MRC2 Splice_Site p.X232_splice 0.11 TCGA-EE-A2MR-06 17 60757548 60757548 C T MRC2 Silent p.F772F 0.10 TCGA-EE-A2MR-06 17 61495703 61495703 C T TANC2 Silent p.A1317A 0.30 TCGA-EE-A2MR-06 17 61498624 61498624 G T TANC2 Nonsense_Mutation p.E1761* 0.13 TCGA-EE-A2MR-06 17 61558518 61558518 A G ACE Missense_Mutation p.N305S 0.08 tolerated(1) benign(0.004) TCGA-EE-A2MR-06 17 61568707 61568707 C T ACE Silent p.A959A 0.11 TCGA-EE-A2MR-06 17 61568713 61568713 C T ACE Silent p.A961A 0.11 TCGA-EE-A2MR-06 17 61570796 61570796 G A ACE Splice_Site p.X971_splice 0.11 TCGA-EE-A2MR-06 17 61949444 61949444 A G CSH2 3'UTR 0.10 TCGA-EE-A2MR-06 17 61958002 61958002 G A GH2 Missense_Mutation p.P196S 0.11 deleterious_low_confidence(0.01) benign(0.02) TCGA-EE-A2MR-06 17 62007708 62007708 G A CD79B Silent p.F53F 0.27 TCGA-EE-A2MR-06 17 62022884 62022884 A G SCN4A Missense_Mutation p.F1186L 0.05 deleterious(0) benign(0.191) TCGA-EE-A2MR-06 17 62049186 62049186 G A SCN4A Silent p.T169T 0.19 TCGA-EE-A2MR-06 17 62082516 62082516 G A ICAM2 Silent p.F93F 0.09 TCGA-EE-A2MR-06 17 62121386 62121386 G A ERN1 Missense_Mutation p.P966S 0.11 tolerated_low_confidence(0.23) benign(0) TCGA-EE-A2MR-06 17 62486935 62486935 G A POLG2 Missense_Mutation p.P316L 0.10 deleterious(0.04) possibly_damaging(0.881) TCGA-EE-A2MR-06 17 62496325 62496325 G A DDX5 Silent p.L521L 0.10 TCGA-EE-A2MR-06 17 62496326 62496326 G A DDX5 Silent p.S520S 0.10 TCGA-EE-A2MR-06 17 62496727 62496727 G A DDX5 Missense_Mutation p.R461C 0.19 deleterious(0) possibly_damaging(0.856) TCGA-EE-A2MR-06 17 62754737 62754737 G A hsa-mir-6080 RNA 0.22 TCGA-EE-A2MR-06 17 63010527 63010527 C T GNA13 Missense_Mutation p.E328K 0.10 tolerated(1) benign(0.167) TCGA-EE-A2MR-06 17 64092741 64092741 G A CEP112 Missense_Mutation p.P218S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 17 64210749 64210749 C T APOH Silent p.V268V 0.16 TCGA-EE-A2MR-06 17 64213068 64213068 G A APOH Missense_Mutation p.P208S 0.21 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MR-06 17 64641554 64641554 G A PRKCA Missense_Mutation p.G152R 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 17 64875094 64875094 G A CACNG5 Silent p.E67E 0.08 TCGA-EE-A2MR-06 17 64875095 64875095 G A CACNG5 Missense_Mutation p.E68K 0.09 tolerated(0.66) benign(0.072) TCGA-EE-A2MR-06 17 64880907 64880907 C T CACNG5 Intron 0.29 TCGA-EE-A2MR-06 17 65184496 65184496 G A HELZ Silent p.F367F 0.10 TCGA-EE-A2MR-06 17 65214781 65214781 G A HELZ Missense_Mutation p.P47L 0.22 tolerated_low_confidence(0.07) benign(0.002) TCGA-EE-A2MR-06 17 6589418 6589418 C T SLC13A5 3'UTR 0.09 TCGA-EE-A2MR-06 17 65909211 65909211 C T BPTF Silent p.I1737I 0.12 TCGA-EE-A2MR-06 17 65909212 65909212 C T BPTF Nonsense_Mutation p.R1738* 0.12 TCGA-EE-A2MR-06 17 66040613 66040613 C T KPNA2 Silent p.I447I 0.05 TCGA-EE-A2MR-06 17 66267065 66267065 G A SLC16A6 Silent p.V412V 0.16 TCGA-EE-A2MR-06 17 66339802 66339802 C T ARSG Silent p.L92L 0.14 TCGA-EE-A2MR-06 17 66898966 66898966 C T ABCA8 Silent p.V844V 0.10 TCGA-EE-A2MR-06 17 66902294 66902294 C T ABCA8 Silent p.K723K 0.15 TCGA-EE-A2MR-06 17 6927965 6927965 G A BCL6B Missense_Mutation p.R216K 0.11 tolerated(0.75) benign(0) TCGA-EE-A2MR-06 17 70845857 70845857 G A SLC39A11 Nonsense_Mutation p.R180* 0.11 TCGA-EE-A2MR-06 17 71418463 71418463 C T SDK2 Missense_Mutation p.D670N 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2MR-06 17 7144739 7144739 G A GABARAP Silent p.L70L 0.12 TCGA-EE-A2MR-06 17 7186634 7186634 C T SLC2A4 Missense_Mutation p.S35F 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MR-06 17 7193638 7193638 G A YBX2 Missense_Mutation p.P226S 0.09 tolerated(0.09) possibly_damaging(0.641) TCGA-EE-A2MR-06 17 7227237 7227237 G A NEURL4 Silent p.F719F 0.12 TCGA-EE-A2MR-06 17 72308208 72308208 G A DNAI2 Missense_Mutation p.E521K 0.21 tolerated(0.11) benign(0.002) TCGA-EE-A2MR-06 17 72346604 72346604 C T KIF19 Silent p.L426L 0.21 TCGA-EE-A2MR-06 17 72347041 72347041 G A AC103809.2 Silent p.F90F 0.14 TCGA-EE-A2MR-06 17 7240682 7240682 G A ACAP1 Silent p.L35L 0.09 TCGA-EE-A2MR-06 17 72469981 72469981 C T CD300A Missense_Mutation p.P116L 0.22 tolerated(0.08) benign(0.435) TCGA-EE-A2MR-06 17 72469982 72469982 C T CD300A Silent p.P116P 0.21 TCGA-EE-A2MR-06 17 72477888 72477888 C T CD300A Silent p.H230H 0.23 TCGA-EE-A2MR-06 17 7251514 7251514 G A ACAP1 Silent p.V494V 0.25 TCGA-EE-A2MR-06 17 72519788 72519788 C T CD300LB Missense_Mutation p.G162R 0.12 tolerated(0.28) benign(0.046) TCGA-EE-A2MR-06 17 72521938 72521938 C T CD300LB Missense_Mutation p.E144K 0.26 tolerated(0.1) benign(0.024) TCGA-EE-A2MR-06 17 72541018 72541018 G A CD300C Missense_Mutation p.R44C 0.13 tolerated(0.08) benign(0.083) TCGA-EE-A2MR-06 17 72613448 72613448 C T CD300E Missense_Mutation p.G66E 0.08 tolerated(0.25) possibly_damaging(0.697) TCGA-EE-A2MR-06 17 72851076 72851076 G A GRIN2C Silent p.P52P 0.10 TCGA-EE-A2MR-06 17 72958339 72958339 C T HID1 Missense_Mutation p.D201N 0.17 deleterious(0) possibly_damaging(0.523) TCGA-EE-A2MR-06 17 72960726 72960726 G A HID1 Missense_Mutation p.P23L 0.11 deleterious(0.02) possibly_damaging(0.855) TCGA-EE-A2MR-06 17 73492407 73492407 C T KIAA0195 Missense_Mutation p.T1033I 0.28 deleterious(0.02) possibly_damaging(0.792) TCGA-EE-A2MR-06 17 73492408 73492408 C T KIAA0195 Silent p.T1033T 0.28 TCGA-EE-A2MR-06 17 73554278 73554278 G A LLGL2 Silent p.E72E 0.09 TCGA-EE-A2MR-06 17 73569340 73569340 C T LLGL2 Silent p.V902V 0.24 TCGA-EE-A2MR-06 17 73625320 73625320 G A RECQL5 Missense_Mutation p.P728L 0.13 deleterious(0) possibly_damaging(0.635) TCGA-EE-A2MR-06 17 7365869 7365869 G A ZBTB4 Missense_Mutation p.P811L 0.11 benign(0.014) TCGA-EE-A2MR-06 17 73726336 73726336 G A ITGB4 Nonsense_Mutation p.W251* 0.09 TCGA-EE-A2MR-06 17 73727994 73727994 C T ITGB4 Silent p.S439S 0.17 TCGA-EE-A2MR-06 17 73736438 73736438 G A ITGB4 Splice_Site p.X816_splice 0.08 TCGA-EE-A2MR-06 17 73746258 73746258 G A ITGB4 Missense_Mutation p.G1128D 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.892) TCGA-EE-A2MR-06 17 73748623 73748623 C T ITGB4 Missense_Mutation p.S1358L 0.11 tolerated_low_confidence(0.07) benign(0.047) TCGA-EE-A2MR-06 17 73752875 73752875 G A ITGB4 Missense_Mutation p.R1663Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 17 73843626 73843626 G A WBP2 Silent p.P199P 0.10 TCGA-EE-A2MR-06 17 73945888 73945888 G A ACOX1 Silent p.I463I 0.08 TCGA-EE-A2MR-06 17 74004845 74004845 G A EVPL Silent p.L1481L 0.12 TCGA-EE-A2MR-06 17 74005341 74005341 C T EVPL Silent p.K1315K 0.07 TCGA-EE-A2MR-06 17 74006118 74006118 C T EVPL Silent p.L1056L 0.17 TCGA-EE-A2MR-06 17 7404345 7404345 C T POLR2A Silent p.S656S 0.10 TCGA-EE-A2MR-06 17 74075362 74075362 C T ZACN Missense_Mutation p.S6F 0.13 tolerated(0.24) benign(0) TCGA-EE-A2MR-06 17 74082214 74082214 G A EXOC7 Missense_Mutation p.S532L 0.09 tolerated(0.17) possibly_damaging(0.698) TCGA-EE-A2MR-06 17 74266362 74266362 C T UBALD2 Silent p.L91L 0.17 TCGA-EE-A2MR-06 17 74278019 74278019 A T QRICH2 Missense_Mutation p.Y1231N 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 74278176 74278176 G A QRICH2 Silent p.I1178I 0.13 TCGA-EE-A2MR-06 17 74387427 74387427 G A UBE2O Missense_Mutation p.P1159L 0.21 deleterious_low_confidence(0.04) benign(0.01) TCGA-EE-A2MR-06 17 74392458 74392458 G A UBE2O Silent p.L854L 0.06 TCGA-EE-A2MR-06 17 74719996 74719996 G A JMJD6 Silent p.T221T 0.27 TCGA-EE-A2MR-06 17 74771114 74771114 C T MFSD11 Missense_Mutation p.R304C 0.20 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2MR-06 17 76117646 76117646 G A TMC6 Silent p.F458F 0.21 TCGA-EE-A2MR-06 17 7630451 7630451 C T DNAH2 Silent p.F80F 0.08 TCGA-EE-A2MR-06 17 76451898 76451898 G A DNAH17 Missense_Mutation p.S3319L 0.17 probably_damaging(0.956) TCGA-EE-A2MR-06 17 76455200 76455200 G A DNAH17 Silent p.I3234I 0.08 TCGA-EE-A2MR-06 17 76471438 76471438 G A DNAH17 Silent p.S2797S 0.18 TCGA-EE-A2MR-06 17 76482354 76482354 G A DNAH17 Silent p.F2337F 0.11 TCGA-EE-A2MR-06 17 76496520 76496520 G A DNAH17-AS1 Missense_Mutation p.G151E 0.37 unknown(0) TCGA-EE-A2MR-06 17 76497195 76497195 G C DNAH17-AS1 3'UTR 0.17 TCGA-EE-A2MR-06 17 76511084 76511084 G A DNAH17 Silent p.D1291D 0.09 TCGA-EE-A2MR-06 17 76525572 76525572 C T DNAH17 Silent p.E1163E 0.13 TCGA-EE-A2MR-06 17 76525746 76525746 G A DNAH17 Silent p.V1105V 0.14 TCGA-EE-A2MR-06 17 76562768 76562768 G A DNAH17 Silent p.D499D 0.18 TCGA-EE-A2MR-06 17 7681415 7681415 C T DNAH2 Silent p.I1756I 0.09 TCGA-EE-A2MR-06 17 76851755 76851755 G A TIMP2 Silent p.D219D 0.09 TCGA-EE-A2MR-06 17 76867038 76867038 G A TIMP2 Silent p.S94S 0.11 TCGA-EE-A2MR-06 17 76867039 76867039 G A TIMP2 Missense_Mutation p.S94F 0.11 tolerated(0.3) probably_damaging(0.913) TCGA-EE-A2MR-06 17 76993539 76993539 G A CANT1 Missense_Mutation p.L56F 0.19 tolerated(0.08) benign(0.021) TCGA-EE-A2MR-06 17 77076405 77076405 C T ENGASE Missense_Mutation p.R228C 0.18 deleterious(0.05) benign(0.117) TCGA-EE-A2MR-06 17 77079887 77079887 C T ENGASE Silent p.I432I 0.28 TCGA-EE-A2MR-06 17 7721110 7721110 G A DNAH2 Nonsense_Mutation p.W3391* 0.14 TCGA-EE-A2MR-06 17 7721163 7721163 G A DNAH2 Missense_Mutation p.E3409K 0.15 probably_damaging(0.988) TCGA-EE-A2MR-06 17 7752119 7752119 C T KDM6B Missense_Mutation p.S838F 0.08 possibly_damaging(0.683) TCGA-EE-A2MR-06 17 77708953 77708953 G A ENPP7 Missense_Mutation p.E171K 0.31 deleterious(0.04) possibly_damaging(0.796) TCGA-EE-A2MR-06 17 77984427 77984427 G A TBC1D16 Missense_Mutation p.P104L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 17 78081398 78081398 C T GAA Silent p.F245F 0.15 TCGA-EE-A2MR-06 17 78112043 78112043 G A EIF4A3 Silent p.F255F 0.15 TCGA-EE-A2MR-06 17 78162232 78162232 G A CARD14 Silent p.L244L 0.30 TCGA-EE-A2MR-06 17 78188472 78188476 GCCCC T SGSH Frame_Shift_Del p.R150Tfs*113 0.27 TCGA-EE-A2MR-06 17 78196486 78196486 C T SLC26A11 Silent p.F89F 0.07 TCGA-EE-A2MR-06 17 78445618 78445618 C T NPTX1 Missense_Mutation p.D331N 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MR-06 17 78831722 78831722 C T RPTOR Intron 0.19 TCGA-EE-A2MR-06 17 78938108 78938108 C T RPTOR Missense_Mutation p.S1329L 0.11 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MR-06 17 79219714 79219714 G A SLC38A10 Missense_Mutation p.P1001L 0.10 tolerated(0.2) benign(0.004) TCGA-EE-A2MR-06 17 79278553 79278553 G A LINC00482 RNA 0.20 TCGA-EE-A2MR-06 17 79278554 79278554 G A LINC00482 RNA 0.20 TCGA-EE-A2MR-06 17 79287742 79287742 G A TMEM105 Silent p.L33L 0.23 TCGA-EE-A2MR-06 17 79478095 79478095 G A ACTG1 Missense_Mutation p.S281F 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MR-06 17 79813082 79813082 G A P4HB Missense_Mutation p.T187I 0.07 tolerated(0.06) possibly_damaging(0.582) TCGA-EE-A2MR-06 17 79827768 79827768 C T ARHGDIA Silent p.Q13Q 0.10 TCGA-EE-A2MR-06 17 79876014 79876014 C T SIRT7 5'UTR 0.13 TCGA-EE-A2MR-06 17 79876015 79876015 C T SIRT7 5'UTR 0.13 TCGA-EE-A2MR-06 17 79954661 79954661 C T ASPSCR1 Missense_Mutation p.P291L 0.15 tolerated(0.38) unknown(0) TCGA-EE-A2MR-06 17 80040808 80040808 G A FASN Missense_Mutation p.R1917C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 17 8006774 8006774 G A ALOXE3 Missense_Mutation p.S740F 0.18 deleterious(0.03) benign(0.272) TCGA-EE-A2MR-06 17 80373278 80373278 G A OGFOD3 Silent p.F100F 0.06 TCGA-EE-A2MR-06 17 80445839 80445839 G A NARF Missense_Mutation p.D393N 0.24 tolerated(0.21) benign(0.424) TCGA-EE-A2MR-06 17 80615611 80615611 G A RAB40B 3'UTR 0.25 TCGA-EE-A2MR-06 17 80789330 80789330 C T ZNF750 Missense_Mutation p.R334K 0.10 tolerated(0.67) benign(0.069) TCGA-EE-A2MR-06 17 80887143 80887143 C T TBCD Missense_Mutation p.P950S 0.13 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 17 8139498 8139498 C T CTC1 Missense_Mutation p.E319K 0.16 tolerated(0.18) possibly_damaging(0.461) TCGA-EE-A2MR-06 17 8139499 8139499 C T CTC1 Silent p.L318L 0.16 TCGA-EE-A2MR-06 17 9615392 9615392 C T USP43 Silent p.L760L 0.09 TCGA-EE-A2MR-06 18 10696236 10696236 G A PIEZO2 Silent p.V2229V 0.19 TCGA-EE-A2MR-06 18 11752415 11752415 C T GNAL Intron 0.09 TCGA-EE-A2MR-06 18 11889433 11889433 T C MPPE1 Silent p.V149V 0.11 TCGA-EE-A2MR-06 18 12012173 12012173 C T IMPA2 Missense_Mutation p.P114S 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 18 12356714 12356714 G A AFG3L2 Silent p.F381F 0.12 TCGA-EE-A2MR-06 18 12673360 12673360 G A CEP76 3'UTR 0.13 TCGA-EE-A2MR-06 18 12984110 12984110 C T SEH1L Nonsense_Mutation p.Q331* 0.10 TCGA-EE-A2MR-06 18 13666501 13666501 G A FAM210A Missense_Mutation p.S266F 0.17 deleterious(0) possibly_damaging(0.868) TCGA-EE-A2MR-06 18 14542672 14542672 G C POTEC Missense_Mutation p.I158M 0.13 tolerated(0.07) probably_damaging(0.989) TCGA-EE-A2MR-06 18 14542880 14542880 G A POTEC Missense_Mutation p.S89F 0.08 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EE-A2MR-06 18 20570923 20570923 C T RBBP8 Silent p.P277P 0.25 TCGA-EE-A2MR-06 18 21136323 21136323 G A NPC1 Missense_Mutation p.R404W 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 18 21534491 21534491 C T LAMA3 Missense_Mutation p.P3294L 0.19 probably_damaging(0.994) TCGA-EE-A2MR-06 18 21743222 21743222 G A OSBPL1A Missense_Mutation p.P925L 0.08 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2MR-06 18 25570308 25570308 C T CDH2 Missense_Mutation p.D451N 0.14 deleterious(0) benign(0.236) TCGA-EE-A2MR-06 18 28739452 28739452 A C DSC1 Missense_Mutation p.L35R 0.11 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MR-06 18 28739453 28739453 G T DSC1 Missense_Mutation p.L35I 0.12 tolerated(0.07) benign(0.2) TCGA-EE-A2MR-06 18 29054225 29054225 G A DSG3 Missense_Mutation p.G748E 0.20 tolerated(0.11) possibly_damaging(0.797) TCGA-EE-A2MR-06 18 29797906 29797906 G A MEP1B Missense_Mutation p.R690Q 0.19 tolerated_low_confidence(0.52) benign(0.014) TCGA-EE-A2MR-06 18 29848134 29848134 G A GAREM Silent p.F777F 0.19 TCGA-EE-A2MR-06 18 29867026 29867026 G A GAREM Missense_Mutation p.P512S 0.11 tolerated(0.05) benign(0.407) TCGA-EE-A2MR-06 18 29867768 29867768 G A GAREM Silent p.F264F 0.10 TCGA-EE-A2MR-06 18 3067449 3067449 G A MYOM1 Silent p.F1623F 0.14 TCGA-EE-A2MR-06 18 31318740 31318740 G A ASXL3 Missense_Mutation p.V458I 0.15 probably_damaging(0.994) TCGA-EE-A2MR-06 18 31319674 31319674 G A ASXL3 Missense_Mutation p.R769K 0.12 benign(0.004) TCGA-EE-A2MR-06 18 34298119 34298119 C T FHOD3 Missense_Mutation p.S778F 0.11 tolerated(0.64) possibly_damaging(0.632) TCGA-EE-A2MR-06 18 347136 347136 G A COLEC12 Silent p.F162F 0.17 TCGA-EE-A2MR-06 18 42532996 42532996 C T SETBP1 Silent p.L1231L 0.18 TCGA-EE-A2MR-06 18 43435585 43435585 G A EPG5 Missense_Mutation p.R2504C 0.12 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 18 43437823 43437823 A T EPG5 Silent p.S2479S 0.11 TCGA-EE-A2MR-06 18 43446795 43446795 G A EPG5 Missense_Mutation p.L2197F 0.07 tolerated(0.71) benign(0.003) TCGA-EE-A2MR-06 18 46385867 46385867 G C CTIF Missense_Mutation p.W580C 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 18 47113180 47113180 C T LIPG Missense_Mutation p.R481C 0.24 tolerated(0.07) possibly_damaging(0.601) TCGA-EE-A2MR-06 18 47390724 47390724 T A MYO5B Missense_Mutation p.K1210N 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2MR-06 18 47563360 47563360 G A MYO5B Silent p.I105I 0.17 TCGA-EE-A2MR-06 18 50731719 50731719 C T DCC Silent p.S569S 0.11 TCGA-EE-A2MR-06 18 51057059 51057059 G A DCC 3'UTR 0.25 TCGA-EE-A2MR-06 18 51858160 51858160 C T STARD6 Missense_Mutation p.D113N 0.11 deleterious(0.02) benign(0.383) TCGA-EE-A2MR-06 18 5415827 5415827 G A EPB41L3 Missense_Mutation p.S686L 0.22 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A2MR-06 18 5489133 5489133 G A EPB41L3 Missense_Mutation p.A17V 0.12 tolerated(0.09) benign(0.24) TCGA-EE-A2MR-06 18 55020154 55020154 C T ST8SIA3 Missense_Mutation p.S26L 0.09 possibly_damaging(0.602) TCGA-EE-A2MR-06 18 55104004 55104004 C T ONECUT2 Silent p.P352P 0.09 TCGA-EE-A2MR-06 18 55273957 55273957 G A NARS Missense_Mutation p.P343L 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MR-06 18 55373778 55373778 C T ATP8B1 Missense_Mutation p.E75K 0.15 tolerated(0.16) benign(0.006) TCGA-EE-A2MR-06 18 56203590 56203590 C T ALPK2 Missense_Mutation p.D1277N 0.10 deleterious(0.02) possibly_damaging(0.575) TCGA-EE-A2MR-06 18 56651250 56651250 G A ZNF532 Missense_Mutation p.R1153K 0.19 tolerated(0.69) benign(0.101) TCGA-EE-A2MR-06 18 57103181 57103181 C T CCBE1 Missense_Mutation p.E394K 0.09 tolerated_low_confidence(0.35) benign(0.08) TCGA-EE-A2MR-06 18 57115291 57115291 G A CCBE1 Silent p.I233I 0.10 TCGA-EE-A2MR-06 18 59157987 59157987 C T CDH20 Silent p.F67F 0.21 TCGA-EE-A2MR-06 18 59195323 59195323 G A CDH20 Missense_Mutation p.E381K 0.12 tolerated(0.17) benign(0.261) TCGA-EE-A2MR-06 18 59221604 59221604 C T CDH20 Silent p.A694A 0.12 TCGA-EE-A2MR-06 18 59483346 59483346 C T RNF152 Missense_Mutation p.M117I 0.14 tolerated(0.53) benign(0) TCGA-EE-A2MR-06 18 61154210 61154210 C T SERPINB5 Missense_Mutation p.P67L 0.12 tolerated(0.09) benign(0.022) TCGA-EE-A2MR-06 18 61645657 61645657 C T SERPINB8 Silent p.L39L 0.14 TCGA-EE-A2MR-06 18 67776851 67776851 G A RTTN Silent p.S1262S 0.15 TCGA-EE-A2MR-06 18 6958515 6958515 G A LAMA1 Missense_Mutation p.S2642L 0.11 tolerated(0.1) possibly_damaging(0.477) TCGA-EE-A2MR-06 18 6982579 6982579 G A LAMA1 Missense_Mutation p.S1936F 0.09 deleterious(0.02) benign(0.361) TCGA-EE-A2MR-06 18 72234468 72234468 G A CNDP1 Missense_Mutation p.D186N 0.16 deleterious(0.04) possibly_damaging(0.548) TCGA-EE-A2MR-06 18 72244185 72244185 A T CNDP1 Missense_Mutation p.N308I 0.12 deleterious(0.01) benign(0.13) TCGA-EE-A2MR-06 18 72775158 72775158 C T ZNF407 Silent p.F1827F 0.12 TCGA-EE-A2MR-06 18 73000406 73000406 C T TSHZ1 Missense_Mutation p.S970L 0.11 deleterious(0) benign(0.06) TCGA-EE-A2MR-06 18 74153338 74153338 G A ZNF516 Missense_Mutation p.S558L 0.09 deleterious(0) benign(0.008) TCGA-EE-A2MR-06 18 756658 756658 A G YES1 Missense_Mutation p.L57P 0.13 tolerated(0.25) benign(0.121) TCGA-EE-A2MR-06 18 76754664 76754664 G A SALL3 Silent p.A891A 0.22 TCGA-EE-A2MR-06 18 76754682 76754682 C G SALL3 Silent p.S897S 0.19 TCGA-EE-A2MR-06 18 77170468 77170468 C T NFATC1 Silent p.L52L 0.08 TCGA-EE-A2MR-06 18 77893556 77893556 C T ADNP2 Missense_Mutation p.S87L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 18 7949229 7949229 C T PTPRM Silent p.S238S 0.09 TCGA-EE-A2MR-06 18 8798182 8798182 C T SOGA2 Nonsense_Mutation p.R777* 0.13 TCGA-EE-A2MR-06 18 905492 905492 G A ADCYAP1 Silent p.G35G 0.22 TCGA-EE-A2MR-06 18 9513025 9513025 T A RALBP1 5'UTR 0.13 TCGA-EE-A2MR-06 18 9513026 9513026 C T RALBP1 5'UTR 0.14 TCGA-EE-A2MR-06 19 1005305 1005305 G A GRIN3B Missense_Mutation p.G602D 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 19 10077060 10077060 G A COL5A3 Missense_Mutation p.S1571L 0.14 unknown(0) TCGA-EE-A2MR-06 19 10084879 10084879 C T COL5A3 Missense_Mutation p.E1158K 0.16 probably_damaging(0.995) TCGA-EE-A2MR-06 19 10089819 10089819 C T COL5A3 Missense_Mutation p.E955K 0.11 unknown(0) TCGA-EE-A2MR-06 19 10108068 10108068 G A COL5A3 Silent p.F414F 0.09 TCGA-EE-A2MR-06 19 10397703 10397703 C T ICAM4 Silent p.F5F 0.17 TCGA-EE-A2MR-06 19 1041405 1041405 C T ABCA7 Silent p.F15F 0.09 TCGA-EE-A2MR-06 19 10419370 10419370 G A ZGLP1 5'UTR 0.10 TCGA-EE-A2MR-06 19 10421176 10421176 G A FDX1L Missense_Mutation p.P180S 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 19 1043415 1043415 C T ABCA7 Silent p.I291I 0.22 TCGA-EE-A2MR-06 19 10475316 10475316 G A TYK2 Silent p.I447I 0.12 TCGA-EE-A2MR-06 19 10600447 10600447 G A KEAP1 Missense_Mutation p.R470C 0.10 deleterious(0.01) benign(0.136) TCGA-EE-A2MR-06 19 10668259 10668259 A C KRI1 Missense_Mutation p.V535G 0.21 deleterious(0) possibly_damaging(0.653) TCGA-EE-A2MR-06 19 1068724 1068724 G A HMHA1 Silent p.K150K 0.11 TCGA-EE-A2MR-06 19 10742769 10742769 C T SLC44A2 Missense_Mutation p.R254C 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MR-06 19 10791923 10791923 C T ILF3 Silent p.A366A 0.16 TCGA-EE-A2MR-06 19 1080437 1080437 T C HMHA1 Intron 0.12 TCGA-EE-A2MR-06 19 11098395 11098395 C A SMARCA4 Missense_Mutation p.P305T 0.12 benign(0.005) TCGA-EE-A2MR-06 19 11216102 11216102 G A LDLR Missense_Mutation p.E174K 0.21 tolerated(0.67) benign(0.007) TCGA-EE-A2MR-06 19 11222211 11222211 C T LDLR Missense_Mutation p.P361L 0.19 deleterious(0.01) benign(0.415) TCGA-EE-A2MR-06 19 11303708 11303708 G A KANK2 Missense_Mutation p.P350S 0.19 tolerated(0.17) possibly_damaging(0.882) TCGA-EE-A2MR-06 19 11541767 11541767 G A CCDC151 Silent p.L106L 0.06 TCGA-EE-A2MR-06 19 11796202 11796202 G A ZNF833P RNA 0.44 TCGA-EE-A2MR-06 19 12542270 12542270 G A ZNF443 Missense_Mutation p.S239F 0.11 tolerated(0.07) possibly_damaging(0.908) TCGA-EE-A2MR-06 19 12575771 12575771 G A ZNF709 Missense_Mutation p.S322F 0.11 tolerated(0.16) probably_damaging(0.93) TCGA-EE-A2MR-06 19 12692059 12692059 G A ZNF490 Missense_Mutation p.P277L 0.15 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2MR-06 19 12739938 12739938 C T ZNF791 Missense_Mutation p.A532V 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 19 12739939 12739939 C T ZNF791 Silent p.A532A 0.10 TCGA-EE-A2MR-06 19 12780244 12780244 C T WDR83OS 5'UTR 0.26 TCGA-EE-A2MR-06 19 12882216 12882216 G A HOOK2 Missense_Mutation p.R199W 0.15 tolerated(0.1) possibly_damaging(0.67) TCGA-EE-A2MR-06 19 12958122 12958122 G A MAST1 Missense_Mutation p.E116K 0.09 deleterious(0) possibly_damaging(0.582) TCGA-EE-A2MR-06 19 12980016 12980016 C T MAST1 Silent p.I970I 0.11 TCGA-EE-A2MR-06 19 13039215 13039215 G A FARSA Missense_Mutation p.A261V 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2MR-06 19 13084260 13084260 C T DAND5 Missense_Mutation p.H128Y 0.11 deleterious(0.03) probably_damaging(0.926) TCGA-EE-A2MR-06 19 13136080 13136080 C T NFIX Silent p.F91F 0.15 TCGA-EE-A2MR-06 19 13397454 13397454 G A CACNA1A Missense_Mutation p.T1139I 0.19 benign(0.001) TCGA-EE-A2MR-06 19 13418631 13418631 C T CACNA1A Missense_Mutation p.D651N 0.14 probably_damaging(0.982) TCGA-EE-A2MR-06 19 13476228 13476228 G A CACNA1A Silent p.I229I 0.15 TCGA-EE-A2MR-06 19 1376566 1376566 C T MUM1 Silent p.R709R 0.16 TCGA-EE-A2MR-06 19 13928583 13928583 C T ZSWIM4 Missense_Mutation p.P456S 0.13 tolerated(0.28) unknown(0) TCGA-EE-A2MR-06 19 14000019 14000019 G A C19orf57 Silent p.F550F 0.19 TCGA-EE-A2MR-06 19 14157118 14157118 G A IL27RA Silent p.E307E 0.06 TCGA-EE-A2MR-06 19 14562679 14562679 C T PKN1 Missense_Mutation p.P343S 0.18 deleterious(0.01) benign(0.352) TCGA-EE-A2MR-06 19 14562690 14562690 C T PKN1 Silent p.I346I 0.14 TCGA-EE-A2MR-06 19 14580775 14580775 C T PKN1 Silent p.I762I 0.09 TCGA-EE-A2MR-06 19 14589289 14589289 G A GIPC1 Missense_Mutation p.P314L 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 19 14589290 14589290 G T GIPC1 Missense_Mutation p.P314T 0.10 tolerated(0.23) probably_damaging(0.997) TCGA-EE-A2MR-06 19 14710878 14710878 C T CLEC17A Missense_Mutation p.P260S 0.20 tolerated(0.33) benign(0.354) TCGA-EE-A2MR-06 19 1507328 1507328 G A ADAMTSL5 Silent p.A255A 0.12 TCGA-EE-A2MR-06 19 1507329 1507329 G A ADAMTSL5 Missense_Mutation p.A255V 0.12 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A2MR-06 19 15197948 15197948 G A OR1I1 Silent p.Q24Q 0.18 TCGA-EE-A2MR-06 19 15300083 15300083 C T NOTCH3 Splice_Site p.X398_splice 0.12 TCGA-EE-A2MR-06 19 15355236 15355236 G A BRD4 Missense_Mutation p.S796L 0.28 benign(0.32) TCGA-EE-A2MR-06 19 15367917 15367917 G A BRD4 Missense_Mutation p.S470F 0.11 possibly_damaging(0.485) TCGA-EE-A2MR-06 19 15569183 15569183 C T RASAL3 Missense_Mutation p.D282N 0.21 deleterious(0.02) probably_damaging(0.972) TCGA-EE-A2MR-06 19 15586356 15586356 G A PGLYRP2 Silent p.A375A 0.15 TCGA-EE-A2MR-06 19 15636216 15636216 G A CYP4F22 Silent p.A23A 0.16 TCGA-EE-A2MR-06 19 15636217 15636217 G A CYP4F22 Missense_Mutation p.V24M 0.16 tolerated(0.06) benign(0.007) TCGA-EE-A2MR-06 19 15839649 15839649 C T OR10H2 Missense_Mutation p.P266S 0.21 tolerated(0.59) benign(0.07) TCGA-EE-A2MR-06 19 15918812 15918812 G A OR10H1 Silent p.F12F 0.09 TCGA-EE-A2MR-06 19 15918838 15918838 C T OR10H1 Missense_Mutation p.A4T 0.22 tolerated(0.56) benign(0.009) TCGA-EE-A2MR-06 19 16059904 16059904 C T OR10H4 Silent p.F29F 0.19 TCGA-EE-A2MR-06 19 16060264 16060264 C T OR10H4 Silent p.T149T 0.19 TCGA-EE-A2MR-06 19 1611752 1611752 G A TCF3 Missense_Mutation p.P640L 0.18 tolerated(0.09) benign(0.066) TCGA-EE-A2MR-06 19 16222790 16222790 C T RAB8A Missense_Mutation p.R27C 0.18 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 19 16280539 16280539 A G CIB3 Missense_Mutation p.Y34H 0.22 deleterious(0.02) possibly_damaging(0.534) TCGA-EE-A2MR-06 19 16280540 16280540 G C CIB3 Silent p.R33R 0.22 TCGA-EE-A2MR-06 19 16339651 16339651 C T AP1M1 Missense_Mutation p.A332V 0.09 tolerated(0.3) benign(0.4) TCGA-EE-A2MR-06 19 16528870 16528870 T G EPS15L1 Missense_Mutation p.Q332H 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 19 16770966 16770966 G A SMIM7 5'UTR 0.21 TCGA-EE-A2MR-06 19 16977262 16977262 G A SIN3B Silent p.A599A 0.19 TCGA-EE-A2MR-06 19 17025287 17025287 G A CPAMD8 Missense_Mutation p.P1317S 0.17 tolerated(0.86) benign(0.042) TCGA-EE-A2MR-06 19 17038839 17038839 C T CPAMD8 Missense_Mutation p.R1164Q 0.15 deleterious(0.03) possibly_damaging(0.46) TCGA-EE-A2MR-06 19 17086957 17086957 G A CPAMD8 Missense_Mutation p.S635L 0.20 tolerated(0.08) possibly_damaging(0.794) TCGA-EE-A2MR-06 19 17362445 17362445 C T USHBP1 Missense_Mutation p.R623Q 0.12 tolerated(0.09) benign(0.048) TCGA-EE-A2MR-06 19 17463144 17463144 C T PLVAP 3'UTR 0.11 TCGA-EE-A2MR-06 19 17612167 17612167 G A SLC27A1 Silent p.K574K 0.13 TCGA-EE-A2MR-06 19 17644466 17644466 G A FAM129C Missense_Mutation p.R159Q 0.22 tolerated(0.08) benign(0.048) TCGA-EE-A2MR-06 19 17679497 17679497 C T COLGALT1 Silent p.V268V 0.11 TCGA-EE-A2MR-06 19 17692109 17692109 C T COLGALT1 Silent p.V575V 0.17 TCGA-EE-A2MR-06 19 17743712 17743712 C T UNC13A Missense_Mutation p.D1103N 0.14 deleterious(0.02) benign(0.167) TCGA-EE-A2MR-06 19 17836764 17836764 C T MAP1S Missense_Mutation p.L191F 0.28 tolerated(0.18) probably_damaging(0.997) TCGA-EE-A2MR-06 19 17844133 17844133 C T MAP1S Missense_Mutation p.L974F 0.21 tolerated(0.23) probably_damaging(0.919) TCGA-EE-A2MR-06 19 1785236 1785236 C T ATP8B3 Missense_Mutation p.G1152S 0.47 tolerated(0.2) benign(0.016) TCGA-EE-A2MR-06 19 17892525 17892525 C T FCHO1 Silent p.V611V 0.19 TCGA-EE-A2MR-06 19 17892612 17892612 C T FCHO1 Silent p.F640F 0.20 TCGA-EE-A2MR-06 19 17922427 17922427 C T B3GNT3 Silent p.F205F 0.25 TCGA-EE-A2MR-06 19 17942510 17942510 G A JAK3 Silent p.L926L 0.19 TCGA-EE-A2MR-06 19 1796238 1796238 G A ATP8B3 Missense_Mutation p.P594S 0.20 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 19 18180412 18180412 C T IL12RB1 Missense_Mutation p.G378E 0.20 tolerated(1) benign(0.004) TCGA-EE-A2MR-06 19 18193024 18193024 G A IL12RB1 Missense_Mutation p.R59C 0.18 tolerated(0.14) benign(0) TCGA-EE-A2MR-06 19 18313430 18313430 G A RAB3A Missense_Mutation p.R41C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 19 18321934 18321934 G A PDE4C Silent p.P648P 0.10 TCGA-EE-A2MR-06 19 18322014 18322014 C T PDE4C Missense_Mutation p.D622N 0.22 tolerated(0.06) benign(0.414) TCGA-EE-A2MR-06 19 18327613 18327613 C T PDE4C Missense_Mutation p.D475N 0.25 tolerated(0.05) benign(0.08) TCGA-EE-A2MR-06 19 18368106 18368106 C A KIAA1683 Missense_Mutation p.V1330F 0.16 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A2MR-06 19 18507060 18507060 G A LRRC25 Silent p.S238S 0.16 TCGA-EE-A2MR-06 19 18507486 18507486 G A LRRC25 Silent p.P96P 0.33 TCGA-EE-A2MR-06 19 18538197 18538197 C T SSBP4 Silent p.I32I 0.29 TCGA-EE-A2MR-06 19 18557151 18557151 G A ELL Missense_Mutation p.R558W 0.38 deleterious(0) benign(0.369) TCGA-EE-A2MR-06 19 18557152 18557152 G T ELL Silent p.L557L 0.38 TCGA-EE-A2MR-06 19 18685973 18685973 C T UBA52 3'UTR 0.27 TCGA-EE-A2MR-06 19 18879331 18879331 C T CRTC1 Silent p.L366L 0.11 TCGA-EE-A2MR-06 19 18888006 18888006 C T CRTC1 Silent p.L589L 0.10 TCGA-EE-A2MR-06 19 19329750 19329750 G A NCAN Missense_Mutation p.E34K 0.20 tolerated(0.11) benign(0.003) TCGA-EE-A2MR-06 19 19335124 19335124 C T NCAN Silent p.I220I 0.25 TCGA-EE-A2MR-06 19 19338712 19338712 C T NCAN Silent p.F761F 0.20 TCGA-EE-A2MR-06 19 19338912 19338912 C T NCAN Missense_Mutation p.P828L 0.16 deleterious(0.02) possibly_damaging(0.655) TCGA-EE-A2MR-06 19 19339201 19339201 G A NCAN Silent p.G924G 0.19 TCGA-EE-A2MR-06 19 19345875 19345875 C T NCAN Missense_Mutation p.P1074S 0.18 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 19 19448000 19448000 C T MAU2 Missense_Mutation p.P128S 0.17 tolerated(0.85) benign(0.114) TCGA-EE-A2MR-06 19 19448001 19448001 C T MAU2 Missense_Mutation p.P128L 0.17 tolerated(0.15) possibly_damaging(0.592) TCGA-EE-A2MR-06 19 19603235 19603235 C A GATAD2A Silent p.T130T 0.08 TCGA-EE-A2MR-06 19 19646358 19646358 C T YJEFN3 Silent p.A188A 0.16 TCGA-EE-A2MR-06 19 19740809 19740809 G A GMIP Missense_Mutation p.P959L 0.18 deleterious_low_confidence(0.02) benign(0.018) TCGA-EE-A2MR-06 19 20235891 20235891 C T CTC-260E6.2 RNA 0.13 TCGA-EE-A2MR-06 19 20807625 20807625 G A ZNF626 Missense_Mutation p.S353F 0.14 tolerated(0.35) possibly_damaging(0.676) TCGA-EE-A2MR-06 19 2120980 2120980 G A AP3D1 Silent p.F454F 0.20 TCGA-EE-A2MR-06 19 21476108 21476108 G A ZNF708 Missense_Mutation p.H554Y 0.11 tolerated(0.07) benign(0.008) TCGA-EE-A2MR-06 19 21719572 21719572 C T ZNF429 Silent p.N239N 0.12 TCGA-EE-A2MR-06 19 22154571 22154571 C T ZNF208 Missense_Mutation p.E1089K 0.19 deleterious(0.05) possibly_damaging(0.484) TCGA-EE-A2MR-06 19 2216325 2216325 C T DOT1L Silent p.L657L 0.11 TCGA-EE-A2MR-06 19 22605085 22605085 G A ZNF98 5'UTR 0.12 TCGA-EE-A2MR-06 19 23937634 23937634 C T ZNF681 Missense_Mutation p.E73K 0.19 tolerated(1) benign(0) TCGA-EE-A2MR-06 19 2403135 2403135 G A TMPRSS9 Silent p.V170V 0.25 TCGA-EE-A2MR-06 19 2833937 2833937 C T ZNF554 Missense_Mutation p.S235L 0.18 deleterious(0.03) benign(0.254) TCGA-EE-A2MR-06 19 2873621 2873621 G A ZNF556 Splice_Site p.X44_splice 0.10 TCGA-EE-A2MR-06 19 291316 291316 G A PPAP2C 5'Flank 0.14 TCGA-EE-A2MR-06 19 2987049 2987049 G A TLE6 Silent p.S118S 0.21 TCGA-EE-A2MR-06 19 30313211 30313211 C T CCNE1 Missense_Mutation p.S302L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 19 307152 307152 G A MIER2 Missense_Mutation p.P528L 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2MR-06 19 30934472 30934472 G A ZNF536 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EE-A2MR-06 19 30934614 30934614 G A ZNF536 Missense_Mutation p.E49K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-EE-A2MR-06 19 31767827 31767827 G A TSHZ3 Nonsense_Mutation p.R958* 0.16 TCGA-EE-A2MR-06 19 31768061 31768061 C T TSHZ3 Missense_Mutation p.E880K 0.19 deleterious(0.02) benign(0.005) TCGA-EE-A2MR-06 19 327146 327146 A T MIER2 Silent p.P160P 0.18 TCGA-EE-A2MR-06 19 32949392 32949392 C T DPY19L3 Silent p.F433F 0.18 TCGA-EE-A2MR-06 19 33333180 33333180 G A SLC7A9 Missense_Mutation p.S373L 0.08 deleterious(0.01) benign(0.16) TCGA-EE-A2MR-06 19 33486951 33486951 G A RHPN2 Silent p.I467I 0.16 TCGA-EE-A2MR-06 19 33623072 33623072 C T WDR88 5'UTR 0.20 TCGA-EE-A2MR-06 19 33623218 33623218 C T WDR88 Missense_Mutation p.S48L 0.11 tolerated_low_confidence(0.23) benign(0.003) TCGA-EE-A2MR-06 19 33638591 33638591 G A WDR88 Missense_Mutation p.D173N 0.10 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 19 34263248 34263248 C T CHST8 Silent p.F185F 0.16 TCGA-EE-A2MR-06 19 34712476 34712476 C T LSM14A Missense_Mutation p.R401C 0.09 tolerated(0.08) benign(0.16) TCGA-EE-A2MR-06 19 34984006 34984006 C T WTIP Silent p.F278F 0.13 TCGA-EE-A2MR-06 19 35250155 35250155 G A ZNF599 Silent p.T517T 0.18 TCGA-EE-A2MR-06 19 3526983 3526983 C T FZR1 Silent p.S131S 0.09 TCGA-EE-A2MR-06 19 3527037 3527037 C T FZR1 Silent p.S149S 0.23 TCGA-EE-A2MR-06 19 3527686 3527686 C T FZR1 Silent p.F176F 0.26 TCGA-EE-A2MR-06 19 35739777 35739777 C T LSR 5'UTR 0.12 TCGA-EE-A2MR-06 19 35761365 35761365 C T USF2 Missense_Mutation p.P149S 0.09 tolerated(0.11) benign(0.11) TCGA-EE-A2MR-06 19 35786364 35786364 G A MAG Intron 0.08 TCGA-EE-A2MR-06 19 35801017 35801017 G A MAG Missense_Mutation p.R491K 0.09 tolerated(0.09) benign(0.141) TCGA-EE-A2MR-06 19 35832029 35832029 C T CD22 Silent p.L499L 0.18 TCGA-EE-A2MR-06 19 3590071 3590071 G A GIPC3 Silent p.A274A 0.25 TCGA-EE-A2MR-06 19 36001154 36001154 C T DMKN Missense_Mutation p.G307R 0.23 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A2MR-06 19 36001155 36001155 C T DMKN Splice_Site p.X307_splice 0.21 TCGA-EE-A2MR-06 19 36038232 36038232 C T TMEM147 Silent p.F186F 0.09 TCGA-EE-A2MR-06 19 36110382 36110382 C A HAUS5 Silent p.T412T 0.14 TCGA-EE-A2MR-06 19 36223347 36223347 C T KMT2B Missense_Mutation p.S1966F 0.17 possibly_damaging(0.737) TCGA-EE-A2MR-06 19 36236335 36236335 C T PSENEN 5'UTR 0.18 TCGA-EE-A2MR-06 19 36297436 36297436 T C PRODH2 Silent p.G375G 0.09 TCGA-EE-A2MR-06 19 36297438 36297438 C T PRODH2 Missense_Mutation p.G375R 0.08 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 19 36321760 36321760 C T NPHS1 Missense_Mutation p.D1194N 0.11 tolerated(0.11) benign(0.167) TCGA-EE-A2MR-06 19 36365518 36365518 C T APLP1 Missense_Mutation p.A390V 0.10 tolerated(0.66) possibly_damaging(0.587) TCGA-EE-A2MR-06 19 36393501 36393501 C T HCST Silent p.I2I 0.11 TCGA-EE-A2MR-06 19 371267 371267 G A THEG Missense_Mutation p.R231C 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 19 3735877 3735877 G A TJP3 Silent p.R366R 0.24 TCGA-EE-A2MR-06 19 375767 375767 C A THEG Missense_Mutation p.E68D 0.18 deleterious(0.01) benign(0.022) TCGA-EE-A2MR-06 19 37643417 37643417 C T ZNF585A Missense_Mutation p.G407R 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 19 37644011 37644011 G A ZNF585A Missense_Mutation p.H209Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 19 37879562 37879562 C T ZNF527 Missense_Mutation p.S204L 0.20 tolerated(0.17) benign(0.051) TCGA-EE-A2MR-06 19 38028151 38028151 C T ZNF793 Silent p.F197F 0.11 TCGA-EE-A2MR-06 19 38190151 38190151 G A ZNF607 Missense_Mutation p.S294F 0.12 tolerated(0.06) possibly_damaging(0.556) TCGA-EE-A2MR-06 19 38573729 38573729 C T SIPA1L3 Silent p.F508F 0.10 TCGA-EE-A2MR-06 19 38621203 38621203 C T SIPA1L3 Silent p.G978G 0.17 TCGA-EE-A2MR-06 19 38817556 38817556 G A KCNK6 Missense_Mutation p.G216S 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 19 38985036 38985036 C T RYR1 Nonsense_Mutation p.Q2107* 0.21 TCGA-EE-A2MR-06 19 38993309 38993309 C T RYR1 Missense_Mutation p.R2593C 0.12 benign(0.255) TCGA-EE-A2MR-06 19 38993313 38993313 C T RYR1 Missense_Mutation p.S2594L 0.17 benign(0) TCGA-EE-A2MR-06 19 38996016 38996016 C T RYR1 Missense_Mutation p.P2793L 0.13 benign(0.042) TCGA-EE-A2MR-06 19 39003027 39003027 G A RYR1 Missense_Mutation p.G3126S 0.08 benign(0.044) TCGA-EE-A2MR-06 19 39090569 39090569 G A MAP4K1 Silent p.L555L 0.12 TCGA-EE-A2MR-06 19 39303572 39303572 G A LGALS4 5'UTR 0.16 TCGA-EE-A2MR-06 19 39406236 39406236 G A SARS2 3'UTR 0.10 TCGA-EE-A2MR-06 19 39423408 39423408 G A MRPS12 3'UTR 0.16 TCGA-EE-A2MR-06 19 3964923 3964923 G A DAPK3 Silent p.F43F 0.12 TCGA-EE-A2MR-06 19 3981385 3981385 G A EEF2 Silent p.I321I 0.08 TCGA-EE-A2MR-06 19 39915501 39915501 C T PLEKHG2 Missense_Mutation p.S1243F 0.11 deleterious_low_confidence(0.03) benign(0.019) TCGA-EE-A2MR-06 19 39978708 39978708 C T TIMM50 Missense_Mutation p.S338L 0.11 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MR-06 19 40197299 40197299 G A LGALS14 Silent p.P55P 0.21 TCGA-EE-A2MR-06 19 40328403 40328403 G A FBL Silent p.I210I 0.11 TCGA-EE-A2MR-06 19 40368576 40368576 C T FCGBP Missense_Mutation p.E4258K 0.11 benign(0.305) TCGA-EE-A2MR-06 19 40408594 40408594 G A FCGBP Silent p.F1415F 0.12 TCGA-EE-A2MR-06 19 40424151 40424151 G A FCGBP Silent p.F684F 0.14 TCGA-EE-A2MR-06 19 40433814 40433814 G A FCGBP Missense_Mutation p.S152L 0.10 benign(0.01) TCGA-EE-A2MR-06 19 40540947 40540947 G A ZNF780B Missense_Mutation p.H607Y 0.10 deleterious(0) possibly_damaging(0.684) TCGA-EE-A2MR-06 19 40739804 40739804 G A AKT2 Missense_Mutation p.S474F 0.10 deleterious(0) possibly_damaging(0.879) TCGA-EE-A2MR-06 19 40746009 40746009 G A AKT2 Silent p.V194V 0.14 TCGA-EE-A2MR-06 19 40842102 40842102 T A C19orf47 Missense_Mutation p.N83I 0.13 deleterious(0) possibly_damaging(0.906) TCGA-EE-A2MR-06 19 40884084 40884084 C T PLD3 3'UTR 0.11 TCGA-EE-A2MR-06 19 41220227 41220227 G A ADCK4 Missense_Mutation p.R60C 0.17 deleterious(0.05) benign(0.008) TCGA-EE-A2MR-06 19 41285941 41285941 C T RAB4B Silent p.L12L 0.16 TCGA-EE-A2MR-06 19 41289884 41289884 C T RAB4B Missense_Mutation p.P112S 0.13 tolerated(0.22) benign(0.029) TCGA-EE-A2MR-06 19 41352930 41352930 C T CYP2A6 Missense_Mutation p.M227I 0.11 benign(0.399) TCGA-EE-A2MR-06 19 41387491 41387491 C T CYP2A7 Intron 0.10 TCGA-EE-A2MR-06 19 41509910 41509910 G A CYP2B6 Missense_Mutation p.R59Q 0.12 tolerated(0.25) benign(0.11) TCGA-EE-A2MR-06 19 41622176 41622176 G A CYP2F1 Missense_Mutation p.G28E 0.11 tolerated(0.07) benign(0.009) TCGA-EE-A2MR-06 19 41700523 41700523 G A CYP2S1 Silent p.Q84Q 0.13 TCGA-EE-A2MR-06 19 4180894 4180894 G A SIRT6 Missense_Mutation p.P27S 0.10 tolerated(0.06) benign(0.13) TCGA-EE-A2MR-06 19 4216889 4216889 G A ANKRD24 Missense_Mutation p.E578K 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-EE-A2MR-06 19 42231174 42231174 C T CEACAM5 Missense_Mutation p.L683F 0.05 deleterious(0.01) benign(0.155) TCGA-EE-A2MR-06 19 42301836 42301836 C T CEACAM3 Missense_Mutation p.S127L 0.12 tolerated(0.2) benign(0.019) TCGA-EE-A2MR-06 19 42485724 42485724 G A ATP1A3 Missense_Mutation p.S469F 0.17 deleterious(0) possibly_damaging(0.801) TCGA-EE-A2MR-06 19 42489220 42489220 G A ATP1A3 Silent p.F294F 0.24 TCGA-EE-A2MR-06 19 42489539 42489539 G A ATP1A3 Nonsense_Mutation p.Q228* 0.08 TCGA-EE-A2MR-06 19 42584584 42584584 G T ZNF574 Missense_Mutation p.C609F 0.17 deleterious(0) probably_damaging(0.951) TCGA-EE-A2MR-06 19 42600013 42600013 G A POU2F2 Silent p.F244F 0.10 TCGA-EE-A2MR-06 19 42626697 42626697 C T POU2F2 Silent p.E20E 0.11 TCGA-EE-A2MR-06 19 42713960 42713960 G A DEDD2 Missense_Mutation p.R161W 0.09 deleterious(0.05) benign(0.097) TCGA-EE-A2MR-06 19 42813791 42813791 C T PRR19 Missense_Mutation p.R19C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 19 42813931 42813931 C T PRR19 Silent p.T65T 0.14 TCGA-EE-A2MR-06 19 42847676 42847676 C T MEGF8 Missense_Mutation p.L521F 0.11 tolerated(0.07) benign(0.203) TCGA-EE-A2MR-06 19 43026158 43026158 C T CEACAM1 Silent p.R207R 0.13 TCGA-EE-A2MR-06 19 43026277 43026277 C T CEACAM1 Missense_Mutation p.E168K 0.08 deleterious(0.03) possibly_damaging(0.902) TCGA-EE-A2MR-06 19 43031474 43031474 C T CEACAM1 Missense_Mutation p.G48E 0.11 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MR-06 19 43233445 43233445 G A PSG3 Missense_Mutation p.S358F 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 19 43349366 43349366 G A PSG10P RNA 0.13 TCGA-EE-A2MR-06 19 43383710 43383710 G A PSG1 Silent p.P8P 0.19 TCGA-EE-A2MR-06 19 43430675 43430675 C T PSG7 Silent p.T301T 0.11 TCGA-EE-A2MR-06 19 43697439 43697439 C T PSG4 3'UTR 0.13 TCGA-EE-A2MR-06 19 43699230 43699230 C T PSG4 Missense_Mutation p.R302K 0.16 tolerated(0.99) benign(0.22) TCGA-EE-A2MR-06 19 43702350 43702350 C T PSG4 Missense_Mutation p.D170N 0.14 deleterious(0.04) benign(0.097) TCGA-EE-A2MR-06 19 43773539 43773539 C T PSG9 Nonsense_Mutation p.W15* 0.18 TCGA-EE-A2MR-06 19 43922367 43922367 G A TEX101 Missense_Mutation p.G208S 0.12 tolerated(0.11) possibly_damaging(0.793) TCGA-EE-A2MR-06 19 43922545 43922545 C T TEX101 Missense_Mutation p.S267F 0.21 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-EE-A2MR-06 19 43965848 43965848 G A LYPD3 Silent p.S232S 0.10 TCGA-EE-A2MR-06 19 4409665 4409665 C T CHAF1A Missense_Mutation p.P290L 0.21 tolerated(0.69) unknown(0) TCGA-EE-A2MR-06 19 44280756 44280756 C T KCNN4 Silent p.T64T 0.08 TCGA-EE-A2MR-06 19 44417558 44417558 G A ZNF45 Missense_Mutation p.S677L 0.23 tolerated(0.55) benign(0) TCGA-EE-A2MR-06 19 44418876 44418876 G A ZNF45 Missense_Mutation p.H238Y 0.11 deleterious(0.02) benign(0.045) TCGA-EE-A2MR-06 19 44470696 44470696 C T ZNF221 Missense_Mutation p.R348C 0.15 tolerated(0.09) benign(0.013) TCGA-EE-A2MR-06 19 44515279 44515279 C T ZNF230 Missense_Mutation p.P363L 0.17 deleterious(0.01) benign(0.21) TCGA-EE-A2MR-06 19 44611004 44611004 C T ZNF224 Missense_Mutation p.P231S 0.14 tolerated(0.16) probably_damaging(0.973) TCGA-EE-A2MR-06 19 44932917 44932917 C T ZNF229 Missense_Mutation p.G680E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 19 45015147 45015147 G A CEACAM20 RNA 0.09 TCGA-EE-A2MR-06 19 45021201 45021201 G A CEACAM20 RNA 0.12 TCGA-EE-A2MR-06 19 4513255 4513255 G A PLIN4 Silent p.S225S 0.10 TCGA-EE-A2MR-06 19 45182151 45182151 C T CEACAM19 Missense_Mutation p.S201F 0.11 tolerated(0.08) possibly_damaging(0.452) TCGA-EE-A2MR-06 19 45208885 45208885 C T CEACAM16 Silent p.L229L 0.14 TCGA-EE-A2MR-06 19 4525805 4525805 G A PLIN5 Missense_Mutation p.S187L 0.18 deleterious(0) benign(0.155) TCGA-EE-A2MR-06 19 45262039 45262039 C T BCL3 Missense_Mutation p.P373L 0.09 tolerated(0.09) benign(0.013) TCGA-EE-A2MR-06 19 45284519 45284519 G A CBLC Missense_Mutation p.E186K 0.11 tolerated(0.26) benign(0.168) TCGA-EE-A2MR-06 19 45284534 45284534 G A CBLC Missense_Mutation p.A191T 0.11 tolerated(0.07) benign(0.17) TCGA-EE-A2MR-06 19 45315790 45315790 G A BCAM Silent p.E163E 0.05 TCGA-EE-A2MR-06 19 45381853 45381853 C T PVRL2 Intron 0.11 TCGA-EE-A2MR-06 19 45448544 45448544 G A APOC4 Silent p.G122G 0.16 TCGA-EE-A2MR-06 19 45567819 45567819 C T CLASRP Missense_Mutation p.S447F 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MR-06 19 45899670 45899670 G A PPP1R13L Missense_Mutation p.P246L 0.15 deleterious(0) possibly_damaging(0.451) TCGA-EE-A2MR-06 19 46176122 46176122 C T GIPR Silent p.F98F 0.13 TCGA-EE-A2MR-06 19 46195224 46195224 C T SNRPD2 5'UTR 0.09 TCGA-EE-A2MR-06 19 46289876 46289876 G A DMWD Missense_Mutation p.S293L 0.11 deleterious(0.03) benign(0) TCGA-EE-A2MR-06 19 46307638 46307638 C T RSPH6A Missense_Mutation p.E509K 0.14 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A2MR-06 19 46313946 46313946 G A RSPH6A Missense_Mutation p.T268I 0.18 tolerated(0.08) benign(0.139) TCGA-EE-A2MR-06 19 46332353 46332353 G A SYMPK Silent p.F620F 0.16 TCGA-EE-A2MR-06 19 46417599 46417599 C T NANOS2 Missense_Mutation p.G118D 0.11 tolerated(0.09) benign(0.041) TCGA-EE-A2MR-06 19 46417850 46417850 C T NANOS2 Silent p.E34E 0.11 TCGA-EE-A2MR-06 19 4658084 4658084 G A C19orf10 Missense_Mutation p.P152L 0.20 tolerated(0.12) possibly_damaging(0.653) TCGA-EE-A2MR-06 19 46623587 46623587 T A IGFL3 Nonstop_Mutation p.*126Yext*33 0.14 TCGA-EE-A2MR-06 19 46997267 46997267 C T PNMAL2 Missense_Mutation p.E486K 0.09 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-EE-A2MR-06 19 46998367 46998367 G A PNMAL2 Missense_Mutation p.A119V 0.10 tolerated(0.2) possibly_damaging(0.491) TCGA-EE-A2MR-06 19 4704291 4704291 G A DPP9 Missense_Mutation p.S151F 0.14 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MR-06 19 47226197 47226197 G A STRN4 Silent p.V599V 0.08 TCGA-EE-A2MR-06 19 47278983 47278983 G A SLC1A5 Silent p.L470L 0.12 TCGA-EE-A2MR-06 19 47570385 47570385 G A ZC3H4 Missense_Mutation p.S1047F 0.25 unknown(0) TCGA-EE-A2MR-06 19 47673089 47673089 C T SAE1 Silent p.C214C 0.09 TCGA-EE-A2MR-06 19 47823546 47823546 C T C5AR1 Missense_Mutation p.S171F 0.11 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 19 48197858 48197858 C T GLTSCR1 Missense_Mutation p.P924S 0.15 benign(0.099) TCGA-EE-A2MR-06 19 48378081 48378081 C T SULT2A1 Missense_Mutation p.R193K 0.24 tolerated(0.07) benign(0.003) TCGA-EE-A2MR-06 19 48609802 48609802 G A PLA2G4C Silent p.L16L 0.08 TCGA-EE-A2MR-06 19 48618884 48618884 C A LIG1 3'UTR 0.13 TCGA-EE-A2MR-06 19 48789078 48789078 G A ZNF114 Missense_Mutation p.R66K 0.13 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 19 49001465 49001465 C T LMTK3 Missense_Mutation p.R983K 0.08 unknown(0) TCGA-EE-A2MR-06 19 49090502 49090502 C T SULT2B1 Silent p.I77I 0.16 TCGA-EE-A2MR-06 19 49100166 49100166 C T SULT2B1 Silent p.F272F 0.23 TCGA-EE-A2MR-06 19 49238556 49238556 C T RASIP1 Missense_Mutation p.G359E 0.14 tolerated(0.39) benign(0.272) TCGA-EE-A2MR-06 19 49254491 49254491 G A FUT1 Silent p.V16V 0.11 TCGA-EE-A2MR-06 19 49398412 49398412 C T TULP2 Silent p.R119R 0.09 TCGA-EE-A2MR-06 19 49547377 49547377 C A CGB5 5'UTR 0.08 TCGA-EE-A2MR-06 19 49552123 49552123 G A CGB8 5'UTR 0.15 TCGA-EE-A2MR-06 19 49937004 49937004 C T SLC17A7 Silent p.A282A 0.22 TCGA-EE-A2MR-06 19 50212045 50212045 G A CPT1C Silent p.P505P 0.11 TCGA-EE-A2MR-06 19 50216904 50216904 G A CPT1C 3'UTR 0.15 TCGA-EE-A2MR-06 19 50247554 50247554 C T TSKS Missense_Mutation p.R432Q 0.09 tolerated(0.28) probably_damaging(0.996) TCGA-EE-A2MR-06 19 50311713 50311713 G A FUZ Nonsense_Mutation p.R331* 0.28 TCGA-EE-A2MR-06 19 50357706 50357706 C T PTOV1 Missense_Mutation p.S72F 0.12 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-EE-A2MR-06 19 50370400 50370400 G A PNKP Missense_Mutation p.P21L 0.19 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 19 50385350 50385350 C T TBC1D17 Missense_Mutation p.L194F 0.13 deleterious(0.03) possibly_damaging(0.78) TCGA-EE-A2MR-06 19 50399229 50399229 G A IL4I1 Missense_Mutation p.P54L 0.10 tolerated(0.05) benign(0.172) TCGA-EE-A2MR-06 19 50412655 50412655 G A NUP62 Missense_Mutation p.P137L 0.11 deleterious(0.01) possibly_damaging(0.617) TCGA-EE-A2MR-06 19 50453412 50453412 C T SIGLEC11 Missense_Mutation p.E638K 0.19 tolerated(0.2) possibly_damaging(0.452) TCGA-EE-A2MR-06 19 50464038 50464038 C T SIGLEC11 Silent p.R77R 0.25 TCGA-EE-A2MR-06 19 50475106 50475106 G A VRK3 3'Flank 0.17 TCGA-EE-A2MR-06 19 50475117 50475117 G A VRK3 3'Flank 0.20 TCGA-EE-A2MR-06 19 5047612 5047612 C T KDM4B Silent p.F186F 0.19 TCGA-EE-A2MR-06 19 50548821 50548821 C T ZNF473 Missense_Mutation p.T374I 0.17 tolerated(0.48) possibly_damaging(0.86) TCGA-EE-A2MR-06 19 50779269 50779269 C T MYH14 Silent p.A1163A 0.13 TCGA-EE-A2MR-06 19 50926215 50926215 G A SPIB Missense_Mutation p.G87E 0.09 tolerated(0.57) probably_damaging(0.999) TCGA-EE-A2MR-06 19 50951489 50951489 G A MYBPC2 Silent p.Q438Q 0.21 TCGA-EE-A2MR-06 19 51022436 51022436 G A LRRC4B Silent p.F178F 0.15 TCGA-EE-A2MR-06 19 51022508 51022508 G A LRRC4B Silent p.F154F 0.13 TCGA-EE-A2MR-06 19 51302732 51302732 G A C19orf48 Intron 0.30 TCGA-EE-A2MR-06 19 51302733 51302733 G C C19orf48 Intron 0.30 TCGA-EE-A2MR-06 19 51410177 51410177 C T KLK4 3'UTR 0.08 TCGA-EE-A2MR-06 19 51582786 51582786 G A KLK14 Missense_Mutation p.P145L 0.10 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A2MR-06 19 51645855 51645855 C T SIGLEC7 Missense_Mutation p.P77S 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A2MR-06 19 51647820 51647820 C T SIGLEC7 Silent p.T197T 0.12 TCGA-EE-A2MR-06 19 51738506 51738506 C T CD33 Silent p.F280F 0.22 TCGA-EE-A2MR-06 19 51742809 51742809 G A CD33 Missense_Mutation p.E321K 0.13 tolerated(0.11) benign(0.301) TCGA-EE-A2MR-06 19 51919227 51919227 C T SIGLEC10 Missense_Mutation p.D317N 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MR-06 19 52033191 52033191 C T SIGLEC6 Missense_Mutation p.G267S 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MR-06 19 5208026 5208026 G A PTPRS Silent p.I1895I 0.24 TCGA-EE-A2MR-06 19 52149148 52149148 G A SIGLEC14 Missense_Mutation p.S196L 0.22 deleterious(0.04) possibly_damaging(0.481) TCGA-EE-A2MR-06 19 5215583 5215583 G A PTPRS Missense_Mutation p.P1374S 0.11 tolerated(0.1) benign(0.129) TCGA-EE-A2MR-06 19 52249761 52249761 G A FPR1 Missense_Mutation p.R163C 0.12 deleterious(0.02) possibly_damaging(0.773) TCGA-EE-A2MR-06 19 52272679 52272679 C T FPR2 Silent p.P256P 0.15 TCGA-EE-A2MR-06 19 52272748 52272748 C T FPR2 Silent p.I279I 0.16 TCGA-EE-A2MR-06 19 52327912 52327912 T C FPR3 Missense_Mutation p.F304S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 19 52376322 52376322 G A ZNF577 Silent p.F307F 0.20 TCGA-EE-A2MR-06 19 52381754 52381754 G A ZNF577 Silent p.F25F 0.11 TCGA-EE-A2MR-06 19 5238958 5238958 G A PTPRS Silent p.P607P 0.12 TCGA-EE-A2MR-06 19 52448549 52448549 C T ZNF613 Silent p.L471L 0.18 TCGA-EE-A2MR-06 19 52497791 52497791 G A ZNF615 Missense_Mutation p.P191S 0.09 tolerated(0.44) benign(0.178) TCGA-EE-A2MR-06 19 52537686 52537686 G A ZNF432 Missense_Mutation p.L416F 0.13 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 19 52716050 52716050 C T PPP2R1A Silent p.I205I 0.11 TCGA-EE-A2MR-06 19 52719261 52719261 C T PPP2R1A Silent p.F309F 0.12 TCGA-EE-A2MR-06 19 52772841 52772841 G A ZNF766 5'UTR 0.12 TCGA-EE-A2MR-06 19 52918850 52918850 C T ZNF528 Missense_Mutation p.L249F 0.13 tolerated(0.15) possibly_damaging(0.486) TCGA-EE-A2MR-06 19 52954845 52954845 G A ZNF578 5'Flank 0.33 TCGA-EE-A2MR-06 19 53008018 53008018 G A ZNF578 Silent p.R58R 0.16 TCGA-EE-A2MR-06 19 53013914 53013914 G A ZNF578 Missense_Mutation p.E94K 0.09 tolerated(0.21) benign(0.173) TCGA-EE-A2MR-06 19 53014622 53014622 C T ZNF578 Missense_Mutation p.L330F 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 19 53057439 53057439 G A ZNF808 Missense_Mutation p.E424K 0.13 deleterious(0.03) possibly_damaging(0.891) TCGA-EE-A2MR-06 19 53209878 53209878 G A ZNF611 Missense_Mutation p.H144Y 0.10 deleterious(0.01) benign(0.057) TCGA-EE-A2MR-06 19 53344539 53344539 G A ZNF468 Silent p.F336F 0.19 TCGA-EE-A2MR-06 19 53612707 53612707 G A ZNF415 Silent p.F197F 0.12 TCGA-EE-A2MR-06 19 53762161 53762161 G A VN1R2 Missense_Mutation p.G178E 0.17 deleterious(0.01) possibly_damaging(0.893) TCGA-EE-A2MR-06 19 53762528 53762528 G A VN1R2 Silent p.R300R 0.14 TCGA-EE-A2MR-06 19 53793075 53793075 C T BIRC8 Missense_Mutation p.E185K 0.12 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2MR-06 19 53793153 53793153 C T BIRC8 Missense_Mutation p.D159N 0.13 tolerated(0.41) benign(0.003) TCGA-EE-A2MR-06 19 53854452 53854452 C T ZNF845 Missense_Mutation p.S175L 0.08 tolerated(0.1) probably_damaging(0.972) TCGA-EE-A2MR-06 19 53854720 53854720 T A ZNF845 Nonsense_Mutation p.C264* 0.15 TCGA-EE-A2MR-06 19 53950484 53950484 A G ZNF761 RNA 0.09 TCGA-EE-A2MR-06 19 54080049 54080049 C T ZNF331 Missense_Mutation p.L79F 0.10 tolerated(0.61) benign(0.037) TCGA-EE-A2MR-06 19 54080363 54080363 G A ZNF331 Silent p.G183G 0.08 TCGA-EE-A2MR-06 19 54191797 54191797 C T MIR1283-1 RNA 0.18 TCGA-EE-A2MR-06 19 54240169 54240169 C T MIR516B1 RNA 0.09 TCGA-EE-A2MR-06 19 54313362 54313362 G A NLRP12 Silent p.F517F 0.14 TCGA-EE-A2MR-06 19 54394986 54394986 G A PRKCG Silent p.V196V 0.07 TCGA-EE-A2MR-06 19 54647226 54647226 C T CNOT3 Silent p.L48L 0.17 TCGA-EE-A2MR-06 19 54760447 54760447 G A LILRB5 Missense_Mutation p.S87F 0.10 tolerated(0.29) benign(0.336) TCGA-EE-A2MR-06 19 54818764 54818764 G A LILRA5 Silent p.V278V 0.12 TCGA-EE-A2MR-06 19 54848165 54848165 G A LILRA4 Missense_Mutation p.S401F 0.18 deleterious(0.04) benign(0.316) TCGA-EE-A2MR-06 19 55086314 55086314 G A LILRA2 Missense_Mutation p.E157K 0.20 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A2MR-06 19 55098824 55098824 G A LILRA2 3'UTR 0.14 TCGA-EE-A2MR-06 19 55106623 55106623 G A LILRA1 Silent p.G139G 0.07 TCGA-EE-A2MR-06 19 55143576 55143576 C T LILRB1 Silent p.S183S 0.13 TCGA-EE-A2MR-06 19 55146142 55146142 C T LILRB1 Silent p.L472L 0.14 TCGA-EE-A2MR-06 19 55147079 55147079 C T LILRB1 Intron 0.15 TCGA-EE-A2MR-06 19 55179188 55179188 G A LILRB4 Missense_Mutation p.E382K 0.14 tolerated(0.2) benign(0.176) TCGA-EE-A2MR-06 19 55286868 55286868 G A KIR2DL1 Missense_Mutation p.E208K 0.12 tolerated(0.53) probably_damaging(0.994) TCGA-EE-A2MR-06 19 55331226 55331226 G A KIR3DL1 Silent p.E138E 0.11 TCGA-EE-A2MR-06 19 55333102 55333102 C T KIR3DL1 Silent p.S246S 0.11 TCGA-EE-A2MR-06 19 55333131 55333131 C T KIR3DL1 Missense_Mutation p.S256F 0.20 tolerated(0.75) benign(0.01) TCGA-EE-A2MR-06 19 55341563 55341563 G A KIR3DL1 Missense_Mutation p.E390K 0.09 tolerated(0.65) benign(0.206) TCGA-EE-A2MR-06 19 55349192 55349192 G A KIR2DS4 Missense_Mutation p.D78N 0.07 tolerated_low_confidence(0.18) benign(0.182) TCGA-EE-A2MR-06 19 55349276 55349276 C T KIR2DS4 Missense_Mutation p.H106Y 0.13 deleterious_low_confidence(0.03) benign(0.12) TCGA-EE-A2MR-06 19 55349300 55349300 C T KIR2DS4 Missense_Mutation p.P114S 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.907) TCGA-EE-A2MR-06 19 55378053 55378053 G A KIR3DL2 Missense_Mutation p.S412N 0.08 deleterious(0.02) benign(0.002) TCGA-EE-A2MR-06 19 55420748 55420748 G A NCR1 Missense_Mutation p.G167E 0.08 tolerated(0.2) possibly_damaging(0.484) TCGA-EE-A2MR-06 19 55696922 55696922 G A PTPRH Missense_Mutation p.R1004W 0.09 possibly_damaging(0.848) TCGA-EE-A2MR-06 19 5610062 5610062 G A SAFB2 Silent p.L414L 0.14 TCGA-EE-A2MR-06 19 56223854 56223854 T A NLRP9 Silent p.I868I 0.10 TCGA-EE-A2MR-06 19 56307582 56307582 C T NLRP11 Missense_Mutation p.E736K 0.12 tolerated(0.39) benign(0.001) TCGA-EE-A2MR-06 19 56373378 56373378 C T NLRP4 Missense_Mutation p.S680F 0.10 tolerated(0.71) benign(0.002) TCGA-EE-A2MR-06 19 56379215 56379215 G A NLRP4 Missense_Mutation p.S776N 0.17 tolerated(0.14) benign(0) TCGA-EE-A2MR-06 19 56467272 56467272 C T NLRP8 Silent p.I616I 0.09 TCGA-EE-A2MR-06 19 56481936 56481936 G A NLRP8 Missense_Mutation p.R803K 0.08 tolerated(0.93) benign(0.001) TCGA-EE-A2MR-06 19 56515251 56515251 C T NLRP5 Nonsense_Mutation p.Q78* 0.17 TCGA-EE-A2MR-06 19 56539495 56539495 G A NLRP5 Nonsense_Mutation p.W632* 0.08 TCGA-EE-A2MR-06 19 56552295 56552295 G A NLRP5 Missense_Mutation p.D932N 0.12 tolerated(1) benign(0.007) TCGA-EE-A2MR-06 19 56701885 56701885 C T ZSCAN5B Missense_Mutation p.D267N 0.08 tolerated(0.25) possibly_damaging(0.84) TCGA-EE-A2MR-06 19 56732890 56732890 G A ZSCAN5A 3'UTR 0.13 TCGA-EE-A2MR-06 19 57642775 57642775 G A USP29 Missense_Mutation p.G911E 0.10 tolerated(0.85) benign(0.009) TCGA-EE-A2MR-06 19 57666741 57666741 C A DUXA Splice_Site p.X147_splice 0.16 TCGA-EE-A2MR-06 19 57666742 57666742 T C DUXA Splice_Site p.X147_splice 0.16 TCGA-EE-A2MR-06 19 5784069 5784069 G A PRR22 Intron 0.12 TCGA-EE-A2MR-06 19 5784257 5784257 G A CTB-54O9.9 3'UTR 0.13 TCGA-EE-A2MR-06 19 58004884 58004886 GTG TT ZNF419 Frame_Shift_Del p.C321Ffs*12 0.12 TCGA-EE-A2MR-06 19 58117551 58117551 T G ZNF530 Missense_Mutation p.F220V 0.09 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A2MR-06 19 58187717 58187717 C T ZSCAN4 Silent p.I68I 0.12 TCGA-EE-A2MR-06 19 5831326 5831326 C T FUT6 3'UTR 0.27 TCGA-EE-A2MR-06 19 58437563 58437563 G A ZNF418 Silent p.L662L 0.09 TCGA-EE-A2MR-06 19 5844472 5844472 G A FUT3 Missense_Mutation p.P127S 0.16 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A2MR-06 19 5844720 5844720 G A FUT3 Missense_Mutation p.S44F 0.09 tolerated(0.73) benign(0) TCGA-EE-A2MR-06 19 58489928 58489928 G A ZNF606 Missense_Mutation p.P707L 0.10 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MR-06 19 58640603 58640603 C T ZNF329 Missense_Mutation p.G90S 0.11 tolerated(0.34) benign(0.007) TCGA-EE-A2MR-06 19 58988660 58988660 C T ZNF446 Silent p.A25A 0.07 TCGA-EE-A2MR-06 19 5997222 5997222 G A RFX2 Missense_Mutation p.S621F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 19 6165883 6165883 G A ACSBG2 Missense_Mutation p.D199N 0.11 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MR-06 19 6230620 6230620 G A MLLT1 Silent p.P127P 0.11 TCGA-EE-A2MR-06 19 6432104 6432104 G A SLC25A41 Missense_Mutation p.R107C 0.13 deleterious(0.01) benign(0.126) TCGA-EE-A2MR-06 19 6465617 6465617 C T CRB3 Silent p.S48S 0.16 TCGA-EE-A2MR-06 19 6468065 6468065 G A DENND1C Missense_Mutation p.S619F 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-EE-A2MR-06 19 6479879 6479879 G A DENND1C Silent p.F39F 0.26 TCGA-EE-A2MR-06 19 6495472 6495472 G A TUBB4A Silent p.P346P 0.14 TCGA-EE-A2MR-06 19 6664771 6664771 G A TNFSF14 3'UTR 0.38 TCGA-EE-A2MR-06 19 6714447 6714447 C A C3 Missense_Mutation p.G172V 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 19 6714448 6714448 C T C3 Missense_Mutation p.G172S 0.24 tolerated(0.05) probably_damaging(0.967) TCGA-EE-A2MR-06 19 6754880 6754880 C T SH2D3A Missense_Mutation p.G315R 0.15 tolerated(0.42) benign(0.02) TCGA-EE-A2MR-06 19 6897307 6897307 C T EMR1 Missense_Mutation p.S129F 0.14 deleterious(0.03) possibly_damaging(0.56) TCGA-EE-A2MR-06 19 6919729 6919729 C T EMR1 Missense_Mutation p.P531S 0.17 deleterious(0.03) possibly_damaging(0.839) TCGA-EE-A2MR-06 19 6926546 6926546 G A EMR1 Missense_Mutation p.G719E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 19 6928183 6928183 C T EMR1 Silent p.F750F 0.14 TCGA-EE-A2MR-06 19 6984722 6984722 G A EMR4P RNA 0.18 TCGA-EE-A2MR-06 19 7075675 7075675 C T ZNF557 Missense_Mutation p.S14F 0.21 tolerated(0.49) possibly_damaging(0.683) TCGA-EE-A2MR-06 19 7082959 7082959 C T ZNF557 Missense_Mutation p.S166F 0.30 deleterious(0.02) benign(0.265) TCGA-EE-A2MR-06 19 7117339 7117339 C T INSR Missense_Mutation p.D1293N 0.12 tolerated(0.08) benign(0.007) TCGA-EE-A2MR-06 19 7566164 7566164 C T C19orf45 Silent p.F152F 0.18 TCGA-EE-A2MR-06 19 7570920 7570920 G A C19orf45 Missense_Mutation p.G359E 0.15 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MR-06 19 7622070 7622070 C T PNPLA6 Silent p.Y1109Y 0.12 TCGA-EE-A2MR-06 19 7794808 7794808 C T CLEC4G Silent p.R214R 0.17 TCGA-EE-A2MR-06 19 7806560 7806560 G A CD209 3'UTR 0.20 TCGA-EE-A2MR-06 19 7809887 7809887 G A CD209 Silent p.S280S 0.10 TCGA-EE-A2MR-06 19 7810924 7810924 C T CD209 Silent p.A76A 0.08 TCGA-EE-A2MR-06 19 7828326 7828326 C T CLEC4M Nonsense_Mutation p.Q32* 0.10 TCGA-EE-A2MR-06 19 8176655 8176655 C T FBN3 Splice_Site p.X1321_splice 0.15 TCGA-EE-A2MR-06 19 8181669 8181669 C T FBN3 Missense_Mutation p.E1201K 0.15 tolerated(0.28) benign(0.009) TCGA-EE-A2MR-06 19 8399453 8399453 C T KANK3 Missense_Mutation p.E420K 0.26 tolerated(0.13) possibly_damaging(0.851) TCGA-EE-A2MR-06 19 843546 843546 G A PRTN3 Silent p.G49G 0.25 TCGA-EE-A2MR-06 19 8563973 8563973 G A PRAM1 Missense_Mutation p.S240F 0.14 tolerated(0.12) benign(0.029) TCGA-EE-A2MR-06 19 8610586 8610586 G A MYO1F Missense_Mutation p.P435L 0.07 deleterious(0) possibly_damaging(0.905) TCGA-EE-A2MR-06 19 8651448 8651448 G A ADAMTS10 Silent p.I799I 0.14 TCGA-EE-A2MR-06 19 8669951 8669951 G A ADAMTS10 Silent p.H127H 0.15 TCGA-EE-A2MR-06 19 8808425 8808425 G A ACTL9 Silent p.F209F 0.14 TCGA-EE-A2MR-06 19 8842024 8842024 T A OR2Z1 Missense_Mutation p.S212T 0.11 deleterious(0.05) benign(0.328) TCGA-EE-A2MR-06 19 8953831 8953831 G A MBD3L1 Silent p.G159G 0.18 TCGA-EE-A2MR-06 19 8979244 8979244 C T MUC16 Missense_Mutation p.E14043K 0.12 probably_damaging(0.931) TCGA-EE-A2MR-06 19 8994157 8994157 C T MUC16 Missense_Mutation p.R13843K 0.16 probably_damaging(0.986) TCGA-EE-A2MR-06 19 9005594 9005594 G A MUC16 Missense_Mutation p.P13271L 0.11 probably_damaging(0.948) TCGA-EE-A2MR-06 19 9009651 9009651 C T MUC16 Silent p.G13025G 0.15 TCGA-EE-A2MR-06 19 9020092 9020092 C T MUC16 Missense_Mutation p.S12468N 0.20 benign(0.19) TCGA-EE-A2MR-06 19 9026256 9026256 C T MUC16 Missense_Mutation p.E12244K 0.10 possibly_damaging(0.624) TCGA-EE-A2MR-06 19 9045903 9045903 C T MUC16 Missense_Mutation p.D11910N 0.19 benign(0.007) TCGA-EE-A2MR-06 19 9048589 9048589 C T MUC16 Silent p.E11014E 0.09 TCGA-EE-A2MR-06 19 9056230 9056230 C T MUC16 Missense_Mutation p.E10406K 0.12 benign(0.007) TCGA-EE-A2MR-06 19 9056445 9056445 G A MUC16 Missense_Mutation p.S10334F 0.17 benign(0.293) TCGA-EE-A2MR-06 19 9060710 9060710 C T MUC16 Missense_Mutation p.M8912I 0.18 unknown(0) TCGA-EE-A2MR-06 19 9064755 9064755 G A MUC16 Missense_Mutation p.S7564F 0.13 unknown(0) TCGA-EE-A2MR-06 19 9065029 9065029 G A MUC16 Missense_Mutation p.P7473S 0.09 unknown(0) TCGA-EE-A2MR-06 19 9066073 9066073 G A MUC16 Missense_Mutation p.P7125S 0.24 unknown(0) TCGA-EE-A2MR-06 19 9067646 9067646 G A MUC16 Silent p.T6600T 0.20 TCGA-EE-A2MR-06 19 9067647 9067647 G A MUC16 Missense_Mutation p.T6600I 0.20 unknown(0) TCGA-EE-A2MR-06 19 9068506 9068506 C T MUC16 Missense_Mutation p.E6314K 0.20 unknown(0) TCGA-EE-A2MR-06 19 9069981 9069981 G A MUC16 Missense_Mutation p.S5822F 0.13 unknown(0) TCGA-EE-A2MR-06 19 9071744 9071744 G A MUC16 Silent p.S5234S 0.18 TCGA-EE-A2MR-06 19 9075298 9075298 C T MUC16 Missense_Mutation p.E4050K 0.15 unknown(0) TCGA-EE-A2MR-06 19 9075336 9075336 G A MUC16 Missense_Mutation p.S4037F 0.13 unknown(0) TCGA-EE-A2MR-06 19 9076411 9076411 G A MUC16 Missense_Mutation p.R3679C 0.16 unknown(0) TCGA-EE-A2MR-06 19 9077304 9077304 G A MUC16 Missense_Mutation p.S3381L 0.08 unknown(0) TCGA-EE-A2MR-06 19 9080501 9080501 C T MUC16 Missense_Mutation p.G3177E 0.10 unknown(0) TCGA-EE-A2MR-06 19 9082904 9082904 C T MUC16 Missense_Mutation p.A2971T 0.12 unknown(0) TCGA-EE-A2MR-06 19 9085999 9085999 G A MUC16 Missense_Mutation p.S1939L 0.24 unknown(0) TCGA-EE-A2MR-06 19 9089741 9089741 C T MUC16 Missense_Mutation p.E692K 0.23 unknown(0) TCGA-EE-A2MR-06 19 9089878 9089878 C T MUC16 Missense_Mutation p.G646D 0.15 unknown(0) TCGA-EE-A2MR-06 19 9091236 9091236 C T MUC16 Missense_Mutation p.M193I 0.18 unknown(0) TCGA-EE-A2MR-06 19 9213024 9213024 C T OR7G2 Missense_Mutation p.G320E 0.08 tolerated(0.93) benign(0.043) TCGA-EE-A2MR-06 19 9213734 9213734 G A OR7G2 Silent p.F83F 0.11 TCGA-EE-A2MR-06 19 9296644 9296644 C T OR7D2 Missense_Mutation p.L63F 0.19 deleterious_low_confidence(0.01) benign(0.327) TCGA-EE-A2MR-06 19 9324757 9324757 C T OR7D4 Missense_Mutation p.G253R 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MR-06 19 9361987 9361987 G A OR7E24 Missense_Mutation p.G90S 0.25 tolerated(0.18) possibly_damaging(0.465) TCGA-EE-A2MR-06 19 9362256 9362256 G T OR7E24 Missense_Mutation p.L179F 0.24 tolerated(0.11) benign(0.104) TCGA-EE-A2MR-06 19 9492070 9492070 C T ZNF177 Missense_Mutation p.L355F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 19 9524000 9524000 G A ZNF266 Missense_Mutation p.S534F 0.11 tolerated(0.69) benign(0.015) TCGA-EE-A2MR-06 19 9578896 9578896 C T ZNF560 Missense_Mutation p.E243K 0.17 deleterious(0.05) possibly_damaging(0.636) TCGA-EE-A2MR-06 19 9639686 9639686 G A ZNF426 Silent p.F345F 0.10 TCGA-EE-A2MR-06 19 990244 990244 C T WDR18 Silent p.S159S 0.15 TCGA-EE-A2MR-06 1 100127916 100127916 G A PALMD Silent p.L29L 0.31 TCGA-EE-A2MR-06 1 100174429 100174429 C T FRRS1 3'UTR 0.29 TCGA-EE-A2MR-06 1 100379259 100379259 C T AGL Nonsense_Mutation p.Q1376* 0.09 TCGA-EE-A2MR-06 1 100488018 100488018 C T SLC35A3 Missense_Mutation p.P322S 0.11 tolerated(0.11) benign(0.009) TCGA-EE-A2MR-06 1 103355070 103355070 C T COL11A1 Missense_Mutation p.E1469K 0.46 unknown(0) TCGA-EE-A2MR-06 1 103355095 103355095 C T COL11A1 Silent p.L1460L 0.22 TCGA-EE-A2MR-06 1 103488468 103488468 G A COL11A1 Silent p.L359L 0.41 TCGA-EE-A2MR-06 1 103491485 103491485 C T COL11A1 Intron 0.10 TCGA-EE-A2MR-06 1 103491840 103491840 C T COL11A1 Missense_Mutation p.E277K 0.15 benign(0.118) TCGA-EE-A2MR-06 1 103540236 103540236 T A COL11A1 Missense_Mutation p.I197F 0.27 probably_damaging(0.998) TCGA-EE-A2MR-06 1 10477456 10477456 C T PGD Silent p.I333I 0.09 TCGA-EE-A2MR-06 1 10523120 10523120 A T DFFA Missense_Mutation p.L260M 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 10703324 10703324 C T CASZ1 Missense_Mutation p.E1305K 0.13 tolerated(0.09) probably_damaging(0.918) TCGA-EE-A2MR-06 1 10710777 10710777 G A CASZ1 Missense_Mutation p.S951L 0.08 deleterious_low_confidence(0) benign(0.281) TCGA-EE-A2MR-06 1 109366204 109366204 C T AKNAD1 Silent p.R681R 0.16 TCGA-EE-A2MR-06 1 109773609 109773609 C T SARS Missense_Mutation p.A186V 0.22 tolerated(0.65) benign(0.005) TCGA-EE-A2MR-06 1 109795158 109795158 C T CELSR2 Silent p.S819S 0.05 TCGA-EE-A2MR-06 1 109795453 109795453 C T CELSR2 Missense_Mutation p.P918S 0.06 deleterious(0.03) possibly_damaging(0.688) TCGA-EE-A2MR-06 1 109804458 109804458 C T CELSR2 Silent p.F1442F 0.15 TCGA-EE-A2MR-06 1 109808508 109808508 C T CELSR2 Missense_Mutation p.P1960L 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A2MR-06 1 109812051 109812051 C T CELSR2 Missense_Mutation p.P2273L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 109840099 109840099 G A MYBPHL Silent p.L125L 0.05 TCGA-EE-A2MR-06 1 110018316 110018316 C T SYPL2 Silent p.G81G 0.07 TCGA-EE-A2MR-06 1 110020512 110020512 G A SYPL2 Missense_Mutation p.D177N 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 1 110022337 110022337 C T SYPL2 3'UTR 0.50 TCGA-EE-A2MR-06 1 11008508 11008508 G A C1orf127 Silent p.L562L 0.13 TCGA-EE-A2MR-06 1 110146621 110146621 C T GNAT2 Missense_Mutation p.E276K 0.12 tolerated(0.07) benign(0.019) TCGA-EE-A2MR-06 1 110168004 110168004 C T AMPD2 Silent p.F111F 0.22 TCGA-EE-A2MR-06 1 110282108 110282108 G A GSTM3 Silent p.D44D 0.18 TCGA-EE-A2MR-06 1 110293935 110293935 G A EPS8L3 Silent p.V535V 0.22 TCGA-EE-A2MR-06 1 110294772 110294772 C T EPS8L3 Missense_Mutation p.E428K 0.16 deleterious(0.05) possibly_damaging(0.779) TCGA-EE-A2MR-06 1 110300978 110300978 G A EPS8L3 Missense_Mutation p.P227L 0.05 deleterious(0.02) benign(0.109) TCGA-EE-A2MR-06 1 110465858 110465858 C T CSF1 Silent p.V205V 0.12 TCGA-EE-A2MR-06 1 11097823 11097823 G A MASP2 Missense_Mutation p.S312L 0.13 tolerated(0.12) benign(0.021) TCGA-EE-A2MR-06 1 11102955 11102955 C T MASP2 Nonsense_Mutation p.W289* 0.07 TCGA-EE-A2MR-06 1 111060743 111060743 C T KCNA10 Missense_Mutation p.V223M 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A2MR-06 1 111216458 111216458 C T KCNA3 Missense_Mutation p.R325Q 0.12 deleterious(0) benign(0.309) TCGA-EE-A2MR-06 1 111440430 111440430 G A CD53 Splice_Site p.X169_splice 0.15 TCGA-EE-A2MR-06 1 11151152 11151152 G A EXOSC10 Nonsense_Mutation p.R188* 0.30 TCGA-EE-A2MR-06 1 11188075 11188075 G A MTOR Nonsense_Mutation p.Q2007* 0.28 TCGA-EE-A2MR-06 1 111991770 111991770 G A WDR77 Missense_Mutation p.P8S 0.33 tolerated_low_confidence(0.24) benign(0.002) TCGA-EE-A2MR-06 1 112045866 112045866 G A ADORA3 Silent p.V37V 0.17 TCGA-EE-A2MR-06 1 11345969 11345969 C T UBIAD1 Silent p.F266F 0.17 TCGA-EE-A2MR-06 1 113460261 113460261 G A SLC16A1 Missense_Mutation p.T256I 0.11 deleterious(0) possibly_damaging(0.555) TCGA-EE-A2MR-06 1 114372269 114372269 G A PTPN22 Missense_Mutation p.S732L 0.29 deleterious(0.04) benign(0.044) TCGA-EE-A2MR-06 1 114438613 114438613 G A AP4B1 Missense_Mutation p.R520C 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 114515914 114515914 C T HIPK1 Missense_Mutation p.S1138F 0.25 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A2MR-06 1 114524263 114524263 T A OLFML3 Missense_Mutation p.F365I 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 115143572 115143572 C T DENND2C Missense_Mutation p.E609K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 115147576 115147576 G A DENND2C Missense_Mutation p.S545L 0.21 deleterious(0) possibly_damaging(0.474) TCGA-EE-A2MR-06 1 115168137 115168137 G A DENND2C Missense_Mutation p.P157S 0.12 tolerated(0.17) benign(0.003) TCGA-EE-A2MR-06 1 115219992 115219992 C T AMPD1 Missense_Mutation p.M489I 0.08 tolerated(0.17) benign(0.171) TCGA-EE-A2MR-06 1 115231335 115231335 G A AMPD1 Missense_Mutation p.A54V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 1 1153970 1153970 G A SDF4 Silent p.S260S 0.12 TCGA-EE-A2MR-06 1 11561197 11561197 C T PTCHD2 Missense_Mutation p.P50S 0.19 tolerated_low_confidence(0.56) benign(0.005) TCGA-EE-A2MR-06 1 117552761 117552761 C T CD101 Silent p.L111L 0.21 TCGA-EE-A2MR-06 1 117564584 117564584 G A CD101 Missense_Mutation p.E803K 0.24 tolerated(0.17) benign(0.019) TCGA-EE-A2MR-06 1 117644282 117644282 A T TTF2 3'UTR 0.36 TCGA-EE-A2MR-06 1 11772432 11772432 G A DRAXIN Missense_Mutation p.E265K 0.13 tolerated(0.46) benign(0.147) TCGA-EE-A2MR-06 1 118424453 118424453 G A GDAP2 Missense_Mutation p.R432C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MR-06 1 11854584 11854584 G A MTHFR Missense_Mutation p.S393F 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2MR-06 1 118558687 118558687 G A SPAG17 Silent p.T1396T 0.41 TCGA-EE-A2MR-06 1 118628633 118628633 C T SPAG17 Nonsense_Mutation p.W558* 0.22 TCGA-EE-A2MR-06 1 1203257 1203257 G A UBE2J2 Missense_Mutation p.S39L 0.18 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MR-06 1 120336872 120336872 G A REG4 3'UTR 0.16 TCGA-EE-A2MR-06 1 120437752 120437752 C T ADAM30 Missense_Mutation p.G403E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 120438486 120438486 G A ADAM30 Silent p.V158V 0.07 TCGA-EE-A2MR-06 1 120464978 120464978 G A NOTCH2 Silent p.I1698I 0.08 TCGA-EE-A2MR-06 1 12062089 12062089 C T MFN2 Silent p.V363V 0.11 TCGA-EE-A2MR-06 1 12082306 12082306 C T MIIP Missense_Mutation p.S90L 0.13 tolerated(0.42) benign(0.07) TCGA-EE-A2MR-06 1 12170185 12170185 C T TNFRSF8 Silent p.L200L 0.17 TCGA-EE-A2MR-06 1 12321191 12321191 C T VPS13D Missense_Mutation p.P467S 0.09 benign(0.001) TCGA-EE-A2MR-06 1 12368588 12368588 G A VPS13D Silent p.E2180E 0.22 TCGA-EE-A2MR-06 1 12460289 12460289 C A VPS13D Missense_Mutation p.P3896T 0.12 probably_damaging(0.996) TCGA-EE-A2MR-06 1 12460290 12460290 C T VPS13D Missense_Mutation p.P3896L 0.11 probably_damaging(0.998) TCGA-EE-A2MR-06 1 12557622 12557622 C T VPS13D Missense_Mutation p.S4244F 0.26 probably_damaging(0.983) TCGA-EE-A2MR-06 1 12628409 12628409 C T DHRS3 Missense_Mutation p.G290E 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 12819315 12819315 G A C1orf158 Missense_Mutation p.D100N 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 12853653 12853653 G A PRAMEF1 Missense_Mutation p.D93N 0.17 deleterious(0.03) benign(0.254) TCGA-EE-A2MR-06 1 12887587 12887587 C T PRAMEF11 Silent p.R90R 0.21 TCGA-EE-A2MR-06 1 12907576 12907576 C T HNRNPCL1 Silent p.Q189Q 0.26 TCGA-EE-A2MR-06 1 12907745 12907745 G A HNRNPCL1 Missense_Mutation p.P133L 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A2MR-06 1 12921556 12921556 G A PRAMEF2 Silent p.R449R 0.08 TCGA-EE-A2MR-06 1 12941752 12941752 G A PRAMEF4 Silent p.F266F 0.15 TCGA-EE-A2MR-06 1 12942168 12942168 G A PRAMEF4 Missense_Mutation p.L128F 0.25 tolerated(0.71) possibly_damaging(0.628) TCGA-EE-A2MR-06 1 12943132 12943132 G A PRAMEF4 Silent p.S28S 0.27 TCGA-EE-A2MR-06 1 12943161 12943161 G A PRAMEF4 Silent p.L19L 0.06 TCGA-EE-A2MR-06 1 1325680 1325680 G A CCNL2 Silent p.A312A 0.20 TCGA-EE-A2MR-06 1 13695845 13695845 T G PRAMEF19 Missense_Mutation p.S374R 0.20 probably_damaging(0.998) TCGA-EE-A2MR-06 1 13718591 13718591 G A PRAMEF17 Missense_Mutation p.E352K 0.12 tolerated(0.12) benign(0.004) TCGA-EE-A2MR-06 1 13912110 13912110 T A PDPN Intron 0.23 TCGA-EE-A2MR-06 1 14107154 14107154 C T PRDM2 Missense_Mutation p.S955F 0.06 benign(0.004) TCGA-EE-A2MR-06 1 145414803 145414803 C T HFE2 Missense_Mutation p.P8S 0.12 tolerated_low_confidence(0.26) unknown(0) TCGA-EE-A2MR-06 1 145415583 145415583 C T HFE2 Silent p.A134A 0.18 TCGA-EE-A2MR-06 1 145518256 145518256 G A PEX11B Missense_Mutation p.A120T 0.09 tolerated(0.17) benign(0.088) TCGA-EE-A2MR-06 1 145560117 145560117 G A ANKRD35 Silent p.V201V 0.10 TCGA-EE-A2MR-06 1 145561870 145561870 G A ANKRD35 Missense_Mutation p.G520R 0.11 deleterious(0.05) probably_damaging(0.979) TCGA-EE-A2MR-06 1 145561886 145561886 C T ANKRD35 Missense_Mutation p.P525L 0.12 tolerated(0.15) benign(0.007) TCGA-EE-A2MR-06 1 145562654 145562654 C T ANKRD35 Missense_Mutation p.A781V 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MR-06 1 146672876 146672876 T C FMO5 Silent p.K347K 0.16 TCGA-EE-A2MR-06 1 147119331 147119331 G A ACP6 Missense_Mutation p.P394L 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 147230637 147230637 C T GJA5 Missense_Mutation p.R237Q 0.09 tolerated(0.34) benign(0.007) TCGA-EE-A2MR-06 1 147380328 147380328 C T GJA8 Silent p.I82I 0.09 TCGA-EE-A2MR-06 1 149763093 149763093 C T FCGR1A 3'UTR 0.13 TCGA-EE-A2MR-06 1 149879342 149879342 G A SV2A Silent p.L530L 0.10 TCGA-EE-A2MR-06 1 149902314 149902314 G A MTMR11 Silent p.F530F 0.13 TCGA-EE-A2MR-06 1 150259041 150259041 C T C1orf51 Missense_Mutation p.S278F 0.19 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MR-06 1 150259208 150259208 C T C1orf51 Missense_Mutation p.R334C 0.12 tolerated(0.17) benign(0.011) TCGA-EE-A2MR-06 1 150463975 150463975 C T TARS2 Silent p.R206R 0.13 TCGA-EE-A2MR-06 1 150463976 150463976 C T TARS2 Nonsense_Mutation p.Q207* 0.13 TCGA-EE-A2MR-06 1 150788865 150788865 G A ARNT Missense_Mutation p.P607L 0.16 deleterious_low_confidence(0) benign(0.24) TCGA-EE-A2MR-06 1 151206841 151206841 T G PIP5K1A Missense_Mutation p.S270A 0.10 deleterious(0) possibly_damaging(0.673) TCGA-EE-A2MR-06 1 151681498 151681498 G A CELF3 Silent p.T154T 0.09 TCGA-EE-A2MR-06 1 151688415 151688415 C T CELF3 Missense_Mutation p.E28K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 151748984 151748984 G A TDRKH Silent p.I325I 0.16 TCGA-EE-A2MR-06 1 151773448 151773448 G A LINGO4 Missense_Mutation p.S578F 0.08 deleterious(0.01) possibly_damaging(0.737) TCGA-EE-A2MR-06 1 151787712 151787712 G A RORC Missense_Mutation p.S163L 0.08 tolerated(0.36) benign(0.03) TCGA-EE-A2MR-06 1 152059694 152059694 T G TCHHL1 Missense_Mutation p.N155T 0.12 deleterious(0.01) possibly_damaging(0.701) TCGA-EE-A2MR-06 1 152192079 152192079 C T HRNR Missense_Mutation p.G676S 0.09 unknown(0) TCGA-EE-A2MR-06 1 152275785 152275785 C T FLG Silent p.Q3859Q 0.15 TCGA-EE-A2MR-06 1 152276039 152276039 C T FLG Missense_Mutation p.E3775K 0.05 unknown(0) TCGA-EE-A2MR-06 1 152277724 152277724 G A FLG Missense_Mutation p.S3213F 0.08 unknown(0) TCGA-EE-A2MR-06 1 152278990 152278990 C T FLG Missense_Mutation p.G2791E 0.05 benign(0.181) TCGA-EE-A2MR-06 1 152279786 152279786 C T FLG Missense_Mutation p.G2526S 0.13 possibly_damaging(0.817) TCGA-EE-A2MR-06 1 152280287 152280287 C T FLG Missense_Mutation p.G2359R 0.15 probably_damaging(0.988) TCGA-EE-A2MR-06 1 152281415 152281415 C T FLG Missense_Mutation p.E1983K 0.05 benign(0.292) TCGA-EE-A2MR-06 1 152281938 152281938 C T FLG Silent p.E1808E 0.08 TCGA-EE-A2MR-06 1 152283027 152283027 C T FLG Silent p.V1445V 0.09 TCGA-EE-A2MR-06 1 152285991 152285991 C T FLG Silent p.R457R 0.12 TCGA-EE-A2MR-06 1 152286383 152286383 C T FLG Missense_Mutation p.E327K 0.13 possibly_damaging(0.616) TCGA-EE-A2MR-06 1 152286926 152286926 C T FLG Missense_Mutation p.E146K 0.13 possibly_damaging(0.535) TCGA-EE-A2MR-06 1 152323855 152323855 G A FLG2 Missense_Mutation p.S2136L 0.16 possibly_damaging(0.777) TCGA-EE-A2MR-06 1 152595469 152595469 C T LCE3A Silent p.G37G 0.11 TCGA-EE-A2MR-06 1 152733075 152733075 G A KPRP Silent p.Q337Q 0.11 TCGA-EE-A2MR-06 1 152760053 152760053 C T LCE1E Missense_Mutation p.S93F 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MR-06 1 152760117 152760117 T C LCE1E Silent p.S114S 0.08 TCGA-EE-A2MR-06 1 153065979 153065979 C T SPRR2E 3'UTR 0.12 TCGA-EE-A2MR-06 1 153270491 153270491 G A PGLYRP3 Silent p.L323L 0.20 TCGA-EE-A2MR-06 1 153362985 153362985 C T S100A8 Silent p.L9L 0.08 TCGA-EE-A2MR-06 1 153579953 153579953 G A S100A16 3'UTR 0.12 TCGA-EE-A2MR-06 1 153665653 153665653 C T NPR1 Nonsense_Mutation p.R1035* 0.17 TCGA-EE-A2MR-06 1 153912185 153912185 G A DENND4B Nonsense_Mutation p.Q567* 0.10 TCGA-EE-A2MR-06 1 15392178 15392178 G A KAZN Missense_Mutation p.G384E 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MR-06 1 153932653 153932653 G T SLC39A1 Missense_Mutation p.S299Y 0.21 tolerated(0.06) benign(0.174) TCGA-EE-A2MR-06 1 154144655 154144655 G A TPM3 Intron 0.08 TCGA-EE-A2MR-06 1 154241257 154241257 C T UBAP2L Missense_Mutation p.H999Y 0.08 deleterious(0) possibly_damaging(0.794) TCGA-EE-A2MR-06 1 15430618 15430618 C T KAZN Missense_Mutation p.P661S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 1 154317450 154317450 C T ATP8B2 Missense_Mutation p.H797Y 0.10 tolerated(0.5) benign(0.018) TCGA-EE-A2MR-06 1 154516517 154516517 G A TDRD10 Silent p.G194G 0.11 TCGA-EE-A2MR-06 1 154680484 154680484 G A KCNN3 Missense_Mutation p.P722S 0.10 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A2MR-06 1 154995717 154995717 C T DCST2 Missense_Mutation p.E661K 0.10 deleterious(0) possibly_damaging(0.867) TCGA-EE-A2MR-06 1 155014008 155014008 G A DCST1 Missense_Mutation p.E223K 0.10 tolerated(0.42) benign(0.003) TCGA-EE-A2MR-06 1 155032808 155032808 C T ADAM15 Silent p.T732T 0.26 TCGA-EE-A2MR-06 1 155220458 155220458 G A FAM189B Silent p.G373G 0.09 TCGA-EE-A2MR-06 1 155264116 155264116 G A PKLR Silent p.I342I 0.13 TCGA-EE-A2MR-06 1 155265495 155265495 C T PKLR Missense_Mutation p.M112I 0.15 deleterious(0.01) possibly_damaging(0.662) TCGA-EE-A2MR-06 1 155348104 155348104 G A ASH1L Silent p.T2100T 0.09 TCGA-EE-A2MR-06 1 15541735 15541735 C T TMEM51 Missense_Mutation p.T51I 0.15 deleterious(0.01) possibly_damaging(0.809) TCGA-EE-A2MR-06 1 155742921 155742921 G A GON4L Missense_Mutation p.P811S 0.08 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 1 156100405 156100405 T C LMNA Intron 0.16 TCGA-EE-A2MR-06 1 156230268 156230268 G A SMG5 Missense_Mutation p.R753W 0.10 tolerated(0.08) probably_damaging(0.984) TCGA-EE-A2MR-06 1 156314452 156314452 C T TSACC Missense_Mutation p.S39F 0.18 tolerated_low_confidence(0.21) probably_damaging(0.983) TCGA-EE-A2MR-06 1 156347977 156347977 G A RHBG Intron 0.26 TCGA-EE-A2MR-06 1 156354372 156354372 G A RHBG Missense_Mutation p.R430Q 0.10 tolerated_low_confidence(0.49) benign(0) TCGA-EE-A2MR-06 1 156453175 156453175 G A MEF2D 5'UTR 0.16 TCGA-EE-A2MR-06 1 156507044 156507044 G A IQGAP3 Silent p.I1117I 0.13 TCGA-EE-A2MR-06 1 1565904 1565904 C T MIB2 Silent p.F1069F 0.21 TCGA-EE-A2MR-06 1 156641393 156641393 G A NES Silent p.L863L 0.14 TCGA-EE-A2MR-06 1 156814561 156814561 C T INSRR Missense_Mutation p.E838K 0.14 deleterious(0.04) possibly_damaging(0.7) TCGA-EE-A2MR-06 1 156828435 156828435 C T INSRR 5'UTR 0.21 TCGA-EE-A2MR-06 1 156849869 156849869 G A NTRK1 Missense_Mutation p.D709N 0.09 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 1 156873738 156873738 C T PEAR1 Missense_Mutation p.P7L 0.12 tolerated(0.78) benign(0) TCGA-EE-A2MR-06 1 156882656 156882656 G A PEAR1 Silent p.V768V 0.19 TCGA-EE-A2MR-06 1 157068962 157068962 C T ETV3L Missense_Mutation p.M89I 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 157488278 157488278 C T FCRL5 Missense_Mutation p.R918K 0.12 tolerated(0.98) benign(0.003) TCGA-EE-A2MR-06 1 157557249 157557249 C T FCRL4 Missense_Mutation p.D222N 0.15 tolerated(0.18) probably_damaging(0.948) TCGA-EE-A2MR-06 1 157667118 157667118 C T FCRL3 Missense_Mutation p.R219K 0.11 tolerated(0.77) benign(0.075) TCGA-EE-A2MR-06 1 157803006 157803006 C T CD5L Missense_Mutation p.E339K 0.16 deleterious(0.03) possibly_damaging(0.772) TCGA-EE-A2MR-06 1 158151337 158151337 G A CD1D Missense_Mutation p.E52K 0.07 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A2MR-06 1 158151829 158151829 G A CD1D Silent p.L112L 0.17 TCGA-EE-A2MR-06 1 158225033 158225033 G A CD1A Missense_Mutation p.G73E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 158259885 158259885 C T CD1C Missense_Mutation p.L11F 0.11 tolerated(0.06) benign(0.001) TCGA-EE-A2MR-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.25 deleterious(0.05) benign(0.049) TCGA-EE-A2MR-06 1 158390494 158390494 G A OR10K2 Missense_Mutation p.L55F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 158449821 158449821 C T OR10R2 Missense_Mutation p.L52F 0.24 tolerated(0.32) benign(0.109) TCGA-EE-A2MR-06 1 158592942 158592942 C T SPTA1 Missense_Mutation p.R1984K 0.11 tolerated(0.23) benign(0.422) TCGA-EE-A2MR-06 1 158670049 158670049 G A OR6K2 Missense_Mutation p.P132S 0.20 tolerated(0.12) benign(0.099) TCGA-EE-A2MR-06 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.11 tolerated(0.38) benign(0.101) TCGA-EE-A2MR-06 1 158908248 158908248 G A PYHIN1 Silent p.Q109Q 0.14 TCGA-EE-A2MR-06 1 159038487 159038487 A T AIM2 Missense_Mutation p.D89E 0.19 tolerated(1) benign(0.008) TCGA-EE-A2MR-06 1 15911250 15911250 C T AGMAT Silent p.L71L 0.15 TCGA-EE-A2MR-06 1 159283652 159283652 C T OR10J3 Silent p.Q266Q 0.24 TCGA-EE-A2MR-06 1 159409980 159409980 G A OR10J1 Missense_Mutation p.M144I 0.20 tolerated(0.08) benign(0.009) TCGA-EE-A2MR-06 1 159505359 159505359 C T OR10J5 Missense_Mutation p.G147R 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A2MR-06 1 159779424 159779424 G A FCRL6 Silent p.E279E 0.10 TCGA-EE-A2MR-06 1 159783291 159783291 C T FCRL6 Missense_Mutation p.S341F 0.14 deleterious(0.01) possibly_damaging(0.556) TCGA-EE-A2MR-06 1 159842769 159842769 G A CCDC19 Silent p.I514I 0.10 TCGA-EE-A2MR-06 1 159899586 159899586 G A IGSF9 Missense_Mutation p.S723L 0.40 tolerated(0.14) benign(0.312) TCGA-EE-A2MR-06 1 159901303 159901303 C T IGSF9 Missense_Mutation p.E485K 0.15 deleterious(0) possibly_damaging(0.58) TCGA-EE-A2MR-06 1 159922126 159922126 G A SLAMF9 Missense_Mutation p.S197F 0.17 deleterious(0.02) benign(0.119) TCGA-EE-A2MR-06 1 160000969 160000969 G A PIGM Silent p.I187I 0.11 TCGA-EE-A2MR-06 1 160100341 160100341 C T ATP1A2 Missense_Mutation p.A594V 0.11 deleterious(0.01) possibly_damaging(0.765) TCGA-EE-A2MR-06 1 160105381 160105381 G A ATP1A2 Missense_Mutation p.G758E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 160143392 160143392 C T ATP1A4 Missense_Mutation p.H626Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 160156126 160156126 C T ATP1A4 Silent p.I1010I 0.11 TCGA-EE-A2MR-06 1 160165264 160165264 C T CASQ1 Silent p.F197F 0.14 TCGA-EE-A2MR-06 1 160293284 160293284 G A COPA Missense_Mutation p.P215S 0.09 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A2MR-06 1 160340542 160340542 C T NHLH1 Silent p.T7T 0.10 TCGA-EE-A2MR-06 1 160393950 160393950 C T VANGL2 Silent p.I394I 0.10 TCGA-EE-A2MR-06 1 160535240 160535240 C T CD84 Silent p.Q114Q 0.13 TCGA-EE-A2MR-06 1 16056306 16056306 C T PLEKHM2 Missense_Mutation p.S697F 0.21 tolerated(0.2) possibly_damaging(0.825) TCGA-EE-A2MR-06 1 160589593 160589593 C T SLAMF1 Silent p.T279T 0.21 TCGA-EE-A2MR-06 1 161017845 161017845 C T ARHGAP30 Nonsense_Mutation p.W989* 0.19 TCGA-EE-A2MR-06 1 161135152 161135152 C T USP21 Missense_Mutation p.S538F 0.12 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MR-06 1 161163811 161163811 G A ADAMTS4 Missense_Mutation p.P488S 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A2MR-06 1 161167980 161167980 C T ADAMTS4 Silent p.G146G 0.18 TCGA-EE-A2MR-06 1 161198820 161198820 C T TOMM40L Missense_Mutation p.L288F 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-EE-A2MR-06 1 161198855 161198855 C T TOMM40L Silent p.F299F 0.15 TCGA-EE-A2MR-06 1 16200740 16200740 C T SPEN Intron 0.15 TCGA-EE-A2MR-06 1 162353002 162353002 G A C1orf226 Silent p.L159L 0.14 TCGA-EE-A2MR-06 1 16242646 16242646 C T SPEN Missense_Mutation p.R423C 0.28 probably_damaging(0.997) TCGA-EE-A2MR-06 1 162724981 162724981 C T DDR2 Silent p.F151F 0.16 TCGA-EE-A2MR-06 1 163310176 163310176 C T NUF2 Missense_Mutation p.S210F 0.10 deleterious(0.05) possibly_damaging(0.613) TCGA-EE-A2MR-06 1 16332565 16332565 G A C1orf64 Missense_Mutation p.M78I 0.21 tolerated(0.05) benign(0.328) TCGA-EE-A2MR-06 1 16475411 16475411 G A EPHA2 Silent p.F95F 0.12 TCGA-EE-A2MR-06 1 165173010 165173010 C T LMX1A 3'UTR 0.50 TCGA-EE-A2MR-06 1 165370563 165370563 G A RXRG Silent p.I443I 0.16 TCGA-EE-A2MR-06 1 165513786 165513786 C T LRRC52 Nonsense_Mutation p.Q85* 0.18 TCGA-EE-A2MR-06 1 165533028 165533028 G A LRRC52 Silent p.T303T 0.14 TCGA-EE-A2MR-06 1 165649900 165649900 G A ALDH9A1 Missense_Mutation p.P205S 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 1 16577301 16577301 G A FBXO42 Missense_Mutation p.P673L 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 1670428 1670428 G A SLC35E2 Nonsense_Mutation p.Q131* 0.08 TCGA-EE-A2MR-06 1 167082994 167082994 C T DUSP27 Missense_Mutation p.P53L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 167097246 167097246 G A DUSP27 Missense_Mutation p.G960R 0.14 tolerated(0.14) benign(0.319) TCGA-EE-A2MR-06 1 167381364 167381364 C T POU2F1 Missense_Mutation p.P575L 0.24 tolerated(0.06) unknown(0) TCGA-EE-A2MR-06 1 16748449 16748449 G A SPATA21 Missense_Mutation p.P18S 0.11 tolerated(0.88) benign(0.001) TCGA-EE-A2MR-06 1 16757885 16757885 G A SPATA21 5'UTR 0.12 TCGA-EE-A2MR-06 1 167787464 167787464 G A ADCY10 Missense_Mutation p.S1443F 0.10 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 1 167793932 167793932 G A ADCY10 Silent p.F1304F 0.07 TCGA-EE-A2MR-06 1 167865909 167865909 G A ADCY10 Silent p.P221P 0.16 TCGA-EE-A2MR-06 1 168014372 168014372 C T DCAF6 Missense_Mutation p.S722F 0.25 deleterious_low_confidence(0.02) benign(0.182) TCGA-EE-A2MR-06 1 168260458 168260458 C T TBX19 Silent p.S88S 0.10 TCGA-EE-A2MR-06 1 168274352 168274352 C T TBX19 Silent p.G278G 0.17 TCGA-EE-A2MR-06 1 169512096 169512096 C T F5 Silent p.L744L 0.11 TCGA-EE-A2MR-06 1 169528509 169528509 C T F5 Silent p.Q204Q 0.16 TCGA-EE-A2MR-06 1 169555551 169555551 C T F5 Missense_Mutation p.G25E 0.10 tolerated(0.96) benign(0.013) TCGA-EE-A2MR-06 1 169586417 169586417 G A SELP Silent p.L110L 0.23 TCGA-EE-A2MR-06 1 169697039 169697039 G A SELE Missense_Mutation p.P437S 0.09 tolerated(0.6) benign(0.103) TCGA-EE-A2MR-06 1 169697040 169697040 G A SELE Silent p.P436P 0.09 TCGA-EE-A2MR-06 1 169699608 169699608 G A SELE Missense_Mutation p.S227F 0.21 deleterious(0) possibly_damaging(0.904) TCGA-EE-A2MR-06 1 171621638 171621638 C T MYOC Silent p.R38R 0.14 TCGA-EE-A2MR-06 1 172501615 172501615 G A SUCO 5'Flank 0.14 TCGA-EE-A2MR-06 1 172501865 172501865 G A SUCO 5'Flank 0.12 TCGA-EE-A2MR-06 1 172628678 172628678 G A FASLG Missense_Mutation p.E113K 0.16 deleterious(0.04) benign(0.022) TCGA-EE-A2MR-06 1 172635073 172635073 G A FASLG Missense_Mutation p.D255N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 17331560 17331560 G A ATP13A2 Missense_Mutation p.S99F 0.29 tolerated(0.71) benign(0.012) TCGA-EE-A2MR-06 1 173470236 173470236 A G SLC9C2 Silent p.S1124S 0.21 TCGA-EE-A2MR-06 1 173780439 173780439 G A CENPL 5'UTR 0.12 TCGA-EE-A2MR-06 1 173881128 173881128 C T SERPINC1 Missense_Mutation p.E145K 0.18 deleterious(0.03) probably_damaging(0.965) TCGA-EE-A2MR-06 1 17420061 17420061 C T PADI2 Splice_Site p.X177_splice 0.12 TCGA-EE-A2MR-06 1 174241549 174241549 C T RABGAP1L Intron 0.15 TCGA-EE-A2MR-06 1 174721469 174721469 C T RABGAP1L Missense_Mutation p.H730Y 0.12 deleterious(0.03) possibly_damaging(0.806) TCGA-EE-A2MR-06 1 175066614 175066614 C T TNN Silent p.S550S 0.11 TCGA-EE-A2MR-06 1 17531670 17531670 G A PADI1 5'UTR 0.36 TCGA-EE-A2MR-06 1 175323630 175323630 C T TNR Nonsense_Mutation p.W1093* 0.13 TCGA-EE-A2MR-06 1 175331899 175331899 G A TNR Silent p.F918F 0.34 TCGA-EE-A2MR-06 1 175362946 175362946 G A TNR Silent p.F442F 0.15 TCGA-EE-A2MR-06 1 17548825 17548825 A T PADI1 Missense_Mutation p.S45C 0.26 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MR-06 1 17548826 17548826 G A PADI1 Missense_Mutation p.S45N 0.28 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MR-06 1 17566267 17566267 C T PADI1 Missense_Mutation p.L541F 0.16 deleterious(0.04) benign(0.038) TCGA-EE-A2MR-06 1 17607200 17607200 G A PADI3 Missense_Mutation p.R557Q 0.21 tolerated(0.17) benign(0.34) TCGA-EE-A2MR-06 1 176709263 176709263 C T PAPPA2 Missense_Mutation p.S1361F 0.62 tolerated(0.65) benign(0.01) TCGA-EE-A2MR-06 1 176762725 176762725 C T PAPPA2 Missense_Mutation p.P1684S 0.13 tolerated(0.26) probably_damaging(0.915) TCGA-EE-A2MR-06 1 176762734 176762734 G A PAPPA2 Missense_Mutation p.D1687N 0.14 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MR-06 1 17714998 17714998 G A PADI6 RNA 0.22 TCGA-EE-A2MR-06 1 17715363 17715363 T G PADI6 RNA 0.22 TCGA-EE-A2MR-06 1 177913747 177913747 G A SEC16B Silent p.F610F 0.09 TCGA-EE-A2MR-06 1 178442228 178442228 C T RASAL2 Silent p.L1233L 0.08 TCGA-EE-A2MR-06 1 178855150 178855150 C T RALGPS2 Missense_Mutation p.P363S 0.15 tolerated(0.11) benign(0.168) TCGA-EE-A2MR-06 1 179023749 179023749 C T FAM20B Silent p.L184L 0.10 TCGA-EE-A2MR-06 1 179095588 179095588 G A ABL2 Missense_Mutation p.P204L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 1 179095589 179095589 G A ABL2 Missense_Mutation p.P204S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MR-06 1 179095614 179095614 G A ABL2 Silent p.F195F 0.13 TCGA-EE-A2MR-06 1 17934297 17934297 G T ARHGEF10L Missense_Mutation p.G145V 0.14 tolerated(0.07) possibly_damaging(0.826) TCGA-EE-A2MR-06 1 179414138 179414138 G A AXDND1 Missense_Mutation p.D533N 0.12 deleterious(0.01) benign(0.379) TCGA-EE-A2MR-06 1 179562682 179562682 G A TDRD5 Missense_Mutation p.G107E 0.26 deleterious(0.03) possibly_damaging(0.667) TCGA-EE-A2MR-06 1 179631265 179631265 C T TDRD5 Silent p.C783C 0.17 TCGA-EE-A2MR-06 1 179834295 179834295 G A IFRG15 Missense_Mutation p.S6L 0.12 deleterious_low_confidence(0.05) benign(0.016) TCGA-EE-A2MR-06 1 180151425 180151425 C T QSOX1 Silent p.F241F 0.17 TCGA-EE-A2MR-06 1 180153184 180153184 C T QSOX1 Missense_Mutation p.R296C 0.19 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2MR-06 1 180163482 180163482 C T QSOX1 Missense_Mutation p.L475F 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 1 180885547 180885547 C T KIAA1614 Missense_Mutation p.P103L 0.28 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MR-06 1 181480585 181480585 C T CACNA1E Missense_Mutation p.H151Y 0.12 deleterious(0) benign(0.415) TCGA-EE-A2MR-06 1 181680091 181680091 G A CACNA1E Missense_Mutation p.E353K 0.23 deleterious(0) benign(0.292) TCGA-EE-A2MR-06 1 181680125 181680125 G A CACNA1E Missense_Mutation p.R364Q 0.09 deleterious(0) benign(0.238) TCGA-EE-A2MR-06 1 181686297 181686297 G A CACNA1E Missense_Mutation p.E462K 0.12 deleterious(0.04) benign(0.292) TCGA-EE-A2MR-06 1 181727209 181727209 G A CACNA1E Missense_Mutation p.A1486T 0.21 tolerated(0.25) possibly_damaging(0.483) TCGA-EE-A2MR-06 1 181754461 181754461 C T CACNA1E Silent p.D1862D 0.20 TCGA-EE-A2MR-06 1 181767784 181767784 C T CACNA1E Silent p.F2252F 0.38 TCGA-EE-A2MR-06 1 182026704 182026704 C T ZNF648 Missense_Mutation p.G148S 0.14 tolerated(0.06) benign(0.115) TCGA-EE-A2MR-06 1 182615833 182615833 G A RGS8 3'UTR 0.11 TCGA-EE-A2MR-06 1 182616020 182616020 C T RGS8 Silent p.T149T 0.09 TCGA-EE-A2MR-06 1 182872245 182872245 C T SHCBP1L Missense_Mutation p.E547K 0.12 tolerated(0.38) benign(0.058) TCGA-EE-A2MR-06 1 183195866 183195866 C T LAMC2 Missense_Mutation p.S367L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 183871708 183871708 C T RGL1 Silent p.L477L 0.30 TCGA-EE-A2MR-06 1 184764096 184764096 G A FAM129A 3'UTR 0.21 TCGA-EE-A2MR-06 1 184777334 184777334 G A FAM129A Silent p.S403S 0.12 TCGA-EE-A2MR-06 1 186113349 186113349 G A HMCN1 Missense_Mutation p.E4657K 0.10 benign(0.001) TCGA-EE-A2MR-06 1 186158974 186158974 C T HMCN1 Silent p.F5624F 0.29 TCGA-EE-A2MR-06 1 186276501 186276501 G A PRG4 Silent p.K550K 0.17 TCGA-EE-A2MR-06 1 186645059 186645059 C T PTGS2 Missense_Mutation p.E410K 0.12 tolerated(0.16) benign(0.002) TCGA-EE-A2MR-06 1 18807986 18807986 G A KLHDC7A Missense_Mutation p.G171R 0.09 tolerated(0.14) benign(0.015) TCGA-EE-A2MR-06 1 18808509 18808509 G A KLHDC7A Missense_Mutation p.R345K 0.18 tolerated(0.91) benign(0.001) TCGA-EE-A2MR-06 1 18961014 18961014 C T PAX7 Silent p.I101I 0.37 TCGA-EE-A2MR-06 1 190067856 190067856 C T BRINP3 Silent p.K531K 0.09 TCGA-EE-A2MR-06 1 190129896 190129896 C T BRINP3 Missense_Mutation p.M362I 0.29 tolerated(0.14) benign(0.014) TCGA-EE-A2MR-06 1 19213005 19213005 G A ALDH4A1 Missense_Mutation p.P84S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 193181590 193181590 C T CDC73 Silent p.D379D 0.14 TCGA-EE-A2MR-06 1 19447897 19447897 G A UBR4 Silent p.F3309F 0.11 TCGA-EE-A2MR-06 1 19447914 19447914 G A UBR4 Missense_Mutation p.L3304F 0.14 probably_damaging(0.951) TCGA-EE-A2MR-06 1 1959591 1959591 C T GABRD Intron 0.12 TCGA-EE-A2MR-06 1 19610571 19610571 G A AKR7A3 Silent p.A251A 0.11 TCGA-EE-A2MR-06 1 196300324 196300324 G A KCNT2 Missense_Mutation p.H689Y 0.21 deleterious(0.02) benign(0.079) TCGA-EE-A2MR-06 1 196458978 196458978 C A KCNT2 Nonsense_Mutation p.G89* 0.13 TCGA-EE-A2MR-06 1 196654241 196654241 T C CFH Silent p.L280L 0.21 TCGA-EE-A2MR-06 1 197390597 197390597 C T CRB1 Nonsense_Mutation p.Q547* 0.16 TCGA-EE-A2MR-06 1 197390707 197390707 C T CRB1 Silent p.I583I 0.09 TCGA-EE-A2MR-06 1 197390814 197390814 G A CRB1 Missense_Mutation p.G619E 0.09 tolerated(0.14) benign(0.116) TCGA-EE-A2MR-06 1 197390934 197390934 C T CRB1 Missense_Mutation p.S659L 0.12 tolerated(0.22) possibly_damaging(0.631) TCGA-EE-A2MR-06 1 198509761 198509761 C T ATP6V1G3 Missense_Mutation p.G7E 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 1 200017564 200017564 C T NR5A2 Missense_Mutation p.S243F 0.12 tolerated(0.2) possibly_damaging(0.535) TCGA-EE-A2MR-06 1 200090064 200090064 C T NR5A2 Silent p.F453F 0.17 TCGA-EE-A2MR-06 1 200523668 200523668 G A KIF14 Missense_Mutation p.R1499C 0.12 deleterious(0.05) benign(0) TCGA-EE-A2MR-06 1 200635639 200635639 G A DDX59 Missense_Mutation p.P77L 0.15 tolerated(0.08) benign(0.002) TCGA-EE-A2MR-06 1 200843103 200843103 C T GPR25 Missense_Mutation p.S313L 0.11 tolerated(0.14) benign(0.215) TCGA-EE-A2MR-06 1 200877860 200877860 G A C1orf106 Missense_Mutation p.E193K 0.09 tolerated(0.07) possibly_damaging(0.457) TCGA-EE-A2MR-06 1 200944007 200944007 G A KIF21B Missense_Mutation p.A1550V 0.14 deleterious(0.01) benign(0.024) TCGA-EE-A2MR-06 1 200950209 200950209 C T KIF21B Silent p.P1286P 0.13 TCGA-EE-A2MR-06 1 200968488 200968488 G A KIF21B Missense_Mutation p.P625L 0.14 tolerated(0.3) benign(0.073) TCGA-EE-A2MR-06 1 200968540 200968540 C T KIF21B Missense_Mutation p.E608K 0.10 deleterious(0.03) probably_damaging(0.952) TCGA-EE-A2MR-06 1 200969712 200969712 G A KIF21B Silent p.A497A 0.13 TCGA-EE-A2MR-06 1 201195166 201195166 C T IGFN1 Silent p.Y3567Y 0.11 TCGA-EE-A2MR-06 1 201196023 201196023 G A IGFN1 Silent p.V3600V 0.12 TCGA-EE-A2MR-06 1 201355998 201355998 C T LAD1 Missense_Mutation p.R164K 0.09 tolerated(0.26) benign(0.034) TCGA-EE-A2MR-06 1 201777982 201777982 C T NAV1 Missense_Mutation p.P1397L 0.11 tolerated(0.73) benign(0.023) TCGA-EE-A2MR-06 1 201915304 201915304 C A LMOD1 Silent p.T55T 0.15 TCGA-EE-A2MR-06 1 201938757 201938757 T A TIMM17A 3'UTR 0.36 TCGA-EE-A2MR-06 1 202097692 202097692 G A GPR37L1 3'UTR 0.12 TCGA-EE-A2MR-06 1 202163309 202163309 G A LGR6 Silent p.L64L 0.12 TCGA-EE-A2MR-06 1 20216943 20216943 G A OTUD3 Missense_Mutation p.R96K 0.08 deleterious(0.04) benign(0.059) TCGA-EE-A2MR-06 1 202287331 202287331 G A LGR6 Missense_Mutation p.A634T 0.19 deleterious(0.03) probably_damaging(0.946) TCGA-EE-A2MR-06 1 202288214 202288214 C T LGR6 Missense_Mutation p.P928L 0.15 tolerated_low_confidence(0.36) benign(0.002) TCGA-EE-A2MR-06 1 202411596 202411596 G T PPP1R12B Silent p.V521V 0.10 TCGA-EE-A2MR-06 1 202568430 202568430 C T SYT2 Silent p.K323K 0.08 TCGA-EE-A2MR-06 1 202987674 202987674 C T TMEM183A Silent p.F258F 0.09 TCGA-EE-A2MR-06 1 20304874 20304874 G A PLA2G2A Missense_Mutation p.R62C 0.21 tolerated(0.17) probably_damaging(0.968) TCGA-EE-A2MR-06 1 203148912 203148912 C T CHI3L1 Missense_Mutation p.D330N 0.18 tolerated(0.63) possibly_damaging(0.875) TCGA-EE-A2MR-06 1 203668766 203668766 C T ATP2B4 Silent p.F190F 0.13 TCGA-EE-A2MR-06 1 203680017 203680017 C T ATP2B4 Silent p.I604I 0.25 TCGA-EE-A2MR-06 1 203696663 203696663 C T ATP2B4 Silent p.I1091I 0.13 TCGA-EE-A2MR-06 1 204128682 204128682 C T REN Silent p.T178T 0.14 TCGA-EE-A2MR-06 1 20417110 20417110 C T PLA2G5 Silent p.L114L 0.18 TCGA-EE-A2MR-06 1 204438353 204438353 G A PIK3C2B Missense_Mutation p.S193F 0.19 deleterious_low_confidence(0) benign(0.002) TCGA-EE-A2MR-06 1 205052974 205052974 G A TMEM81 Missense_Mutation p.R159C 0.31 deleterious(0.01) benign(0.129) TCGA-EE-A2MR-06 1 205065952 205065952 G A RBBP5 Silent p.P418P 0.07 TCGA-EE-A2MR-06 1 205126506 205126506 C A DSTYK Silent p.L749L 0.16 TCGA-EE-A2MR-06 1 205126507 205126507 A G DSTYK Missense_Mutation p.L749P 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 205495302 205495302 G A CDK18 Missense_Mutation p.R219Q 0.17 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A2MR-06 1 205549803 205549803 C T MFSD4 Silent p.F148F 0.24 TCGA-EE-A2MR-06 1 205631987 205631987 G A SLC45A3 Missense_Mutation p.T311I 0.14 deleterious(0) benign(0.208) TCGA-EE-A2MR-06 1 205814602 205814602 C T PM20D1 Missense_Mutation p.D114N 0.08 tolerated(0.33) benign(0.047) TCGA-EE-A2MR-06 1 205892484 205892484 G A SLC26A9 Silent p.F546F 0.11 TCGA-EE-A2MR-06 1 205901911 205901911 G A SLC26A9 Missense_Mutation p.P99S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 206239489 206239489 C T C1orf186 Missense_Mutation p.E137K 0.25 deleterious(0.04) probably_damaging(0.961) TCGA-EE-A2MR-06 1 206240150 206240150 G A C1orf186 Missense_Mutation p.S101L 0.09 tolerated(0.19) benign(0.028) TCGA-EE-A2MR-06 1 206664990 206664990 C T IKBKE Silent p.F581F 0.17 TCGA-EE-A2MR-06 1 206772821 206772821 G A EIF2D Missense_Mutation p.H400Y 0.12 tolerated(0.64) benign(0.003) TCGA-EE-A2MR-06 1 207071167 207071167 G A IL24 5'UTR 0.13 TCGA-EE-A2MR-06 1 207133126 207133126 C T FCAMR Missense_Mutation p.E491K 0.13 tolerated(1) benign(0.012) TCGA-EE-A2MR-06 1 207196120 207196120 G A C1orf116 Missense_Mutation p.P330L 0.31 deleterious(0.01) possibly_damaging(0.504) TCGA-EE-A2MR-06 1 207510695 207510695 C T CD55 Missense_Mutation p.S334F 0.11 deleterious(0.02) probably_damaging(0.931) TCGA-EE-A2MR-06 1 207648364 207648364 G A CR2 Missense_Mutation p.R840Q 0.29 tolerated(0.29) benign(0.001) TCGA-EE-A2MR-06 1 207753667 207753667 C T CR1 Silent p.F1673F 0.31 TCGA-EE-A2MR-06 1 207758215 207758215 C T CR1 Missense_Mutation p.R1842C 0.17 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A2MR-06 1 208215514 208215514 G A PLXNA2 Silent p.L1405L 0.10 TCGA-EE-A2MR-06 1 20827452 20827452 G A MUL1 Silent p.L264L 0.19 TCGA-EE-A2MR-06 1 208390428 208390428 G A PLXNA2 Silent p.I280I 0.30 TCGA-EE-A2MR-06 1 208391132 208391132 G A PLXNA2 Missense_Mutation p.R46C 0.11 tolerated(0.06) probably_damaging(0.92) TCGA-EE-A2MR-06 1 209879272 209879272 G A HSD11B1 Missense_Mutation p.E69K 0.15 tolerated(0.64) benign(0.023) TCGA-EE-A2MR-06 1 209961745 209961745 G A IRF6 3'UTR 0.17 TCGA-EE-A2MR-06 1 209964128 209964128 G A IRF6 Missense_Mutation p.P258S 0.13 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 1 209964129 209964129 A C IRF6 Silent p.G257G 0.13 TCGA-EE-A2MR-06 1 21031351 21031351 G A KIF17 Silent p.L238L 0.10 TCGA-EE-A2MR-06 1 2103579 2103579 C T PRKCZ Missense_Mutation p.L383F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 21039976 21039976 G A KIF17 Missense_Mutation p.L151F 0.27 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 1 21048471 21048471 G A SH2D5 Silent p.F362F 0.16 TCGA-EE-A2MR-06 1 210577943 210577943 C T HHAT Missense_Mutation p.P203S 0.14 tolerated(0.41) benign(0.283) TCGA-EE-A2MR-06 1 211451573 211451573 C T RCOR3 Nonsense_Mutation p.Q211* 0.18 TCGA-EE-A2MR-06 1 211654761 211654761 C T RD3 5'UTR 0.11 TCGA-EE-A2MR-06 1 211952301 211952301 G A LPGAT1 Silent p.I271I 0.21 TCGA-EE-A2MR-06 1 212273637 212273637 G A DTL Silent p.R435R 0.12 TCGA-EE-A2MR-06 1 212799454 212799454 G A FAM71A Missense_Mutation p.R412Q 0.29 tolerated(0.32) benign(0.042) TCGA-EE-A2MR-06 1 213046070 213046070 C T FLVCR1 Nonsense_Mutation p.Q312* 0.16 TCGA-EE-A2MR-06 1 214209112 214209112 C T PROX1 Silent p.L717L 0.25 TCGA-EE-A2MR-06 1 214638071 214638071 G A PTPN14 Missense_Mutation p.R26C 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MR-06 1 215259970 215259970 C T KCNK2 Silent p.F102F 0.09 TCGA-EE-A2MR-06 1 215848395 215848395 G A USH2A Silent p.I4286I 0.31 TCGA-EE-A2MR-06 1 216062053 216062053 G A USH2A Silent p.P2646P 0.10 TCGA-EE-A2MR-06 1 216420104 216420104 G A USH2A Missense_Mutation p.R878C 0.21 possibly_damaging(0.773) TCGA-EE-A2MR-06 1 216462752 216462752 C T USH2A Missense_Mutation p.G614E 0.15 probably_damaging(1) TCGA-EE-A2MR-06 1 216680389 216680389 G A ESRRG Silent p.L435L 0.17 TCGA-EE-A2MR-06 1 217688185 217688185 G A GPATCH2 Missense_Mutation p.S382F 0.18 tolerated(0.28) probably_damaging(0.971) TCGA-EE-A2MR-06 1 21940554 21940554 G A RAP1GAP Missense_Mutation p.A171V 0.24 tolerated(0.08) benign(0.009) TCGA-EE-A2MR-06 1 220340695 220340695 G A RAB3GAP2 Silent p.L1009L 0.12 TCGA-EE-A2MR-06 1 22160360 22160360 G A HSPG2 Silent p.V3593V 0.31 TCGA-EE-A2MR-06 1 22178048 22178048 G A HSPG2 Silent p.V2383V 0.15 TCGA-EE-A2MR-06 1 221913020 221913020 G A DUSP10 Missense_Mutation p.L23F 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 222715383 222715383 G A HHIPL2 Silent p.P363P 0.05 TCGA-EE-A2MR-06 1 222715384 222715384 G A HHIPL2 Missense_Mutation p.P363L 0.06 deleterious(0.04) benign(0.262) TCGA-EE-A2MR-06 1 222717015 222717015 G A HHIPL2 Missense_Mutation p.H280Y 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MR-06 1 222794578 222794578 C T MIA3 Missense_Mutation p.P71S 0.06 tolerated(0.66) benign(0.018) TCGA-EE-A2MR-06 1 222802528 222802528 C T MIA3 Missense_Mutation p.P656S 0.11 tolerated(1) benign(0) TCGA-EE-A2MR-06 1 22310196 22310196 C T CELA3B Silent p.I124I 0.18 TCGA-EE-A2MR-06 1 223177295 223177295 C T DISP1 Silent p.F852F 0.07 TCGA-EE-A2MR-06 1 223178531 223178531 C T DISP1 Silent p.F1264F 0.12 TCGA-EE-A2MR-06 1 223178811 223178811 C T DISP1 Missense_Mutation p.H1358Y 0.07 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A2MR-06 1 223284651 223284651 C T TLR5 Missense_Mutation p.D575N 0.33 tolerated(0.1) possibly_damaging(0.479) TCGA-EE-A2MR-06 1 223285804 223285804 G A TLR5 Silent p.L190L 0.10 TCGA-EE-A2MR-06 1 22332412 22332412 G A CELA3A Intron 0.19 TCGA-EE-A2MR-06 1 223465962 223465962 G A SUSD4 Silent p.P60P 0.21 TCGA-EE-A2MR-06 1 223934850 223934850 C T CAPN2 Missense_Mutation p.L238F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 224377347 224377347 G C DEGS1 Missense_Mutation p.V51L 0.13 deleterious(0.03) benign(0.102) TCGA-EE-A2MR-06 1 224455830 224455830 C A NVL Silent p.G696G 0.09 TCGA-EE-A2MR-06 1 224482050 224482050 G A NVL Missense_Mutation p.S415L 0.09 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2MR-06 1 226075129 226075129 T A LEFTY1 Missense_Mutation p.E236V 0.08 tolerated(1) possibly_damaging(0.842) TCGA-EE-A2MR-06 1 226566885 226566885 G A PARP1 Missense_Mutation p.S568F 0.13 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MR-06 1 226578131 226578131 G A PARP1 Silent p.L199L 0.17 TCGA-EE-A2MR-06 1 228003912 228003912 C T PRSS38 Silent p.L90L 0.10 TCGA-EE-A2MR-06 1 228033958 228033958 G A PRSS38 3'UTR 0.09 TCGA-EE-A2MR-06 1 228109678 228109678 G A WNT9A Silent p.T213T 0.10 TCGA-EE-A2MR-06 1 228112043 228112043 C T WNT9A Silent p.L137L 0.14 TCGA-EE-A2MR-06 1 228363073 228363073 C T IBA57 Silent p.F310F 0.24 TCGA-EE-A2MR-06 1 228459751 228459751 G A OBSCN Missense_Mutation p.E1939K 0.15 probably_damaging(0.993) TCGA-EE-A2MR-06 1 228464218 228464218 G A OBSCN Missense_Mutation p.M2471I 0.11 possibly_damaging(0.468) TCGA-EE-A2MR-06 1 228464220 228464220 A G OBSCN Missense_Mutation p.E2472G 0.11 possibly_damaging(0.861) TCGA-EE-A2MR-06 1 228487092 228487092 G A OBSCN Missense_Mutation p.G4448E 0.10 probably_damaging(1) TCGA-EE-A2MR-06 1 228505323 228505323 G A OBSCN Missense_Mutation p.E5531K 0.13 possibly_damaging(0.893) TCGA-EE-A2MR-06 1 22850879 22850879 C T ZBTB40 Missense_Mutation p.S1156F 0.22 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2MR-06 1 228523940 228523940 G A OBSCN Silent p.A6459A 0.12 TCGA-EE-A2MR-06 1 228524704 228524704 G A OBSCN Splice_Site p.X6470_splice 0.23 TCGA-EE-A2MR-06 1 22852806 22852806 C T ZBTB40 Nonsense_Mutation p.Q1213* 0.23 TCGA-EE-A2MR-06 1 228547874 228547874 G A OBSCN Intron 0.15 TCGA-EE-A2MR-06 1 228556557 228556557 C T OBSCN Silent p.I7591I 0.10 TCGA-EE-A2MR-06 1 228563820 228563820 G A OBSCN Missense_Mutation p.G8590E 0.12 probably_damaging(0.999) TCGA-EE-A2MR-06 1 22915766 22915766 G A EPHA8 Intron 0.13 TCGA-EE-A2MR-06 1 229601164 229601164 T C NUP133 Intron 0.09 TCGA-EE-A2MR-06 1 229613413 229613413 G A NUP133 Nonsense_Mutation p.Q563* 0.19 TCGA-EE-A2MR-06 1 22965941 22965941 C T C1QA 3'UTR 0.26 TCGA-EE-A2MR-06 1 22987460 22987460 G A C1QB Missense_Mutation p.D115N 0.22 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A2MR-06 1 22987516 22987516 C T C1QB Silent p.P133P 0.19 TCGA-EE-A2MR-06 1 230838804 230838804 C T AGT 3'UTR 0.36 TCGA-EE-A2MR-06 1 230895368 230895368 C T CAPN9 Missense_Mutation p.H132Y 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MR-06 1 232568155 232568155 G A SIPA1L2 Missense_Mutation p.S1365L 0.08 tolerated(0.06) benign(0.04) TCGA-EE-A2MR-06 1 233136146 233136146 C T PCNXL2 Missense_Mutation p.E1745K 0.14 deleterious(0.01) benign(0.424) TCGA-EE-A2MR-06 1 233313642 233313642 G A PCNXL2 Missense_Mutation p.S1060F 0.21 deleterious(0) possibly_damaging(0.746) TCGA-EE-A2MR-06 1 233514855 233514855 C T MLK4 Silent p.S701S 0.12 TCGA-EE-A2MR-06 1 23418836 23418836 G A LUZP1 Missense_Mutation p.P640L 0.12 tolerated(0.23) benign(0.005) TCGA-EE-A2MR-06 1 23418837 23418837 G C LUZP1 Missense_Mutation p.P640A 0.13 tolerated(0.74) benign(0) TCGA-EE-A2MR-06 1 23519807 23519807 G A HTR1D Silent p.I302I 0.26 TCGA-EE-A2MR-06 1 235972338 235972338 G A LYST Missense_Mutation p.P594S 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2MR-06 1 236767259 236767259 G A HEATR1 Missense_Mutation p.A46V 0.16 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MR-06 1 236906244 236906244 G A ACTN2 Missense_Mutation p.E386K 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MR-06 1 236914814 236914814 G A ACTN2 Silent p.E567E 0.07 TCGA-EE-A2MR-06 1 236924324 236924324 G A ACTN2 Missense_Mutation p.E793K 0.13 deleterious(0) possibly_damaging(0.579) TCGA-EE-A2MR-06 1 236924440 236924440 C T ACTN2 Silent p.V831V 0.12 TCGA-EE-A2MR-06 1 237777484 237777484 C T RYR2 Missense_Mutation p.L1686F 0.14 benign(0.065) TCGA-EE-A2MR-06 1 237813268 237813268 T G RYR2 Missense_Mutation p.F2535C 0.14 probably_damaging(0.99) TCGA-EE-A2MR-06 1 237947468 237947468 C T RYR2 Silent p.I4152I 0.14 TCGA-EE-A2MR-06 1 237994829 237994829 T C RYR2 Silent p.Y4924Y 0.20 TCGA-EE-A2MR-06 1 23908127 23908127 C T MDS2 RNA 0.19 TCGA-EE-A2MR-06 1 240071631 240071631 G A CHRM3 Missense_Mutation p.E294K 0.20 tolerated(0.39) benign(0.046) TCGA-EE-A2MR-06 1 240072361 240072361 G A CHRM3 Missense_Mutation p.S537N 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 240371642 240371642 C T FMN2 Missense_Mutation p.P1177L 0.50 unknown(0) TCGA-EE-A2MR-06 1 240371643 240371643 C T FMN2 Silent p.P1177P 0.27 TCGA-EE-A2MR-06 1 240656265 240656265 G A GREM2 3'UTR 0.23 TCGA-EE-A2MR-06 1 240939453 240939453 G A RGS7 3'UTR 0.16 TCGA-EE-A2MR-06 1 241262032 241262032 C T RGS7 Missense_Mutation p.E37K 0.12 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A2MR-06 1 241958551 241958551 G A WDR64 Missense_Mutation p.E1004K 0.11 tolerated(0.08) benign(0.04) TCGA-EE-A2MR-06 1 24383843 24383843 G A MYOM3 3'UTR 0.21 TCGA-EE-A2MR-06 1 24390630 24390630 C T MYOM3 Missense_Mutation p.G1185E 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 24426228 24426228 G A MYOM3 Missense_Mutation p.R200C 0.08 deleterious(0.01) benign(0.03) TCGA-EE-A2MR-06 1 24483936 24483936 G A IFNLR1 Missense_Mutation p.P416L 0.25 tolerated(0.77) benign(0.004) TCGA-EE-A2MR-06 1 245927442 245927442 G A SMYD3 Silent p.F362F 0.30 TCGA-EE-A2MR-06 1 247150418 247150418 C T ZNF695 Missense_Mutation p.E467K 0.17 tolerated(0.23) possibly_damaging(0.894) TCGA-EE-A2MR-06 1 247150613 247150613 G A ZNF695 Missense_Mutation p.H402Y 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 1 247588011 247588011 G A NLRP3 Silent p.L422L 0.11 TCGA-EE-A2MR-06 1 247588545 247588545 C T NLRP3 Silent p.I600I 0.11 TCGA-EE-A2MR-06 1 24768660 24768660 C T NIPAL3 Missense_Mutation p.S93F 0.16 deleterious(0) probably_damaging(0.941) TCGA-EE-A2MR-06 1 24768670 24768670 C T NIPAL3 Silent p.F96F 0.19 TCGA-EE-A2MR-06 1 247712508 247712508 C T GCSAML Silent p.L5L 0.16 TCGA-EE-A2MR-06 1 247752325 247752325 G A OR2G2 Missense_Mutation p.G222S 0.11 tolerated(0.11) possibly_damaging(0.461) TCGA-EE-A2MR-06 1 248039388 248039388 G A TRIM58 Missense_Mutation p.G353E 0.11 tolerated(0.19) possibly_damaging(0.625) TCGA-EE-A2MR-06 1 248039742 248039742 C T TRIM58 Missense_Mutation p.S471F 0.12 tolerated_low_confidence(0.11) benign(0.265) TCGA-EE-A2MR-06 1 248059060 248059060 C T OR2W3 Missense_Mutation p.P58S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 248059074 248059074 C T OR2W3 Silent p.F62F 0.16 TCGA-EE-A2MR-06 1 248224643 248224643 T C OR2L3 Silent p.V220V 0.13 TCGA-EE-A2MR-06 1 248263533 248263533 C T OR2L13 Missense_Mutation p.P286S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 1 248343409 248343409 G A OR2M2 Missense_Mutation p.G41E 0.10 tolerated(0.06) benign(0.049) TCGA-EE-A2MR-06 1 248344127 248344127 C T OR2M2 Silent p.I280I 0.17 TCGA-EE-A2MR-06 1 248458011 248458011 C T OR2T12 Silent p.V290V 0.12 TCGA-EE-A2MR-06 1 248525236 248525236 C T OR2T4 Silent p.V118V 0.09 TCGA-EE-A2MR-06 1 248525813 248525813 A T OR2T4 Missense_Mutation p.T311S 0.18 deleterious(0.01) possibly_damaging(0.665) TCGA-EE-A2MR-06 1 2492151 2492151 C A TNFRSF14 Silent p.T183T 0.12 TCGA-EE-A2MR-06 1 25228631 25228631 G A RUNX3 Silent p.A424A 0.27 TCGA-EE-A2MR-06 1 25229042 25229042 G A RUNX3 Silent p.A287A 0.16 TCGA-EE-A2MR-06 1 2525331 2525331 C T MMEL1 Missense_Mutation p.E597K 0.19 tolerated(0.43) benign(0.021) TCGA-EE-A2MR-06 1 2538422 2538422 C T MMEL1 Missense_Mutation p.E208K 0.12 tolerated(0.47) benign(0.009) TCGA-EE-A2MR-06 1 25611115 25611115 C T RHD Missense_Mutation p.S67L 0.09 tolerated(0.07) benign(0.273) TCGA-EE-A2MR-06 1 25747182 25747182 G A RHCE Silent p.T32T 0.06 TCGA-EE-A2MR-06 1 26515325 26515325 C T CNKSR1 Silent p.L585L 0.24 TCGA-EE-A2MR-06 1 26691313 26691313 C T ZNF683 Missense_Mutation p.E242K 0.25 tolerated(0.09) benign(0.184) TCGA-EE-A2MR-06 1 26898006 26898006 C T RPS6KA1 Silent p.L562L 0.11 TCGA-EE-A2MR-06 1 27676943 27676943 G A SYTL1 Silent p.R324R 0.17 TCGA-EE-A2MR-06 1 27877702 27877702 G A AHDC1 Silent p.L309L 0.36 TCGA-EE-A2MR-06 1 27943473 27943473 C T FGR Missense_Mutation p.D193N 0.25 tolerated(0.06) benign(0.034) TCGA-EE-A2MR-06 1 28339627 28339627 G A EYA3 Missense_Mutation p.S255F 0.12 tolerated(0.1) benign(0.008) TCGA-EE-A2MR-06 1 29189312 29189312 G A OPRD1 Silent p.V212V 0.17 TCGA-EE-A2MR-06 1 2939144 2939144 G A ACTRT2 Silent p.E298E 0.13 TCGA-EE-A2MR-06 1 29644278 29644278 C T PTPRU Missense_Mutation p.P1188S 0.24 deleterious(0.01) possibly_damaging(0.698) TCGA-EE-A2MR-06 1 31438930 31438930 G A PUM1 Missense_Mutation p.S662F 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 1 32084964 32084964 C T HCRTR1 Silent p.F57F 0.08 TCGA-EE-A2MR-06 1 32221700 32221700 G A BAI2 Silent p.T246T 0.08 TCGA-EE-A2MR-06 1 32221723 32221723 G A BAI2 Missense_Mutation p.P239S 0.13 tolerated(0.45) benign(0.021) TCGA-EE-A2MR-06 1 32262225 32262225 T A SPOCD1 Missense_Mutation p.D746V 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 1 32279990 32279990 G A SPOCD1 Silent p.L315L 0.15 TCGA-EE-A2MR-06 1 32636340 32636340 G A KPNA6 Missense_Mutation p.E486K 0.20 deleterious(0.05) benign(0.085) TCGA-EE-A2MR-06 1 32688000 32688000 C T EIF3I 5'UTR 0.26 TCGA-EE-A2MR-06 1 32751115 32751115 G A LCK Missense_Mutation p.G443E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 32842335 32842335 G A BSDC1 Silent p.L245L 0.16 TCGA-EE-A2MR-06 1 3328936 3328936 C T PRDM16 Silent p.F725F 0.16 TCGA-EE-A2MR-06 1 3329121 3329121 C A PRDM16 Missense_Mutation p.P787H 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-EE-A2MR-06 1 3329122 3329122 C T PRDM16 Silent p.P787P 0.29 TCGA-EE-A2MR-06 1 3348617 3348617 G A PRDM16 Silent p.E1203E 0.13 TCGA-EE-A2MR-06 1 33558919 33558919 C T ADC Silent p.S163S 0.14 TCGA-EE-A2MR-06 1 3395127 3395127 C T ARHGEF16 Missense_Mutation p.R589C 0.18 tolerated(0.07) benign(0.082) TCGA-EE-A2MR-06 1 3396452 3396452 G C ARHGEF16 Silent p.V655V 0.08 TCGA-EE-A2MR-06 1 3396453 3396453 G A ARHGEF16 Missense_Mutation p.V656I 0.08 deleterious(0.03) probably_damaging(0.939) TCGA-EE-A2MR-06 1 3397100 3397100 G A ARHGEF16 Silent p.V693V 0.11 TCGA-EE-A2MR-06 1 33985519 33985519 G A CSMD2 Silent p.S3399S 0.29 TCGA-EE-A2MR-06 1 33990641 33990641 G A CSMD2 Missense_Mutation p.P3269S 0.24 deleterious(0) benign(0.026) TCGA-EE-A2MR-06 1 34015871 34015871 C T CSMD2 Silent p.R2797R 0.13 TCGA-EE-A2MR-06 1 34015943 34015943 G A CSMD2 Silent p.S2773S 0.28 TCGA-EE-A2MR-06 1 34049413 34049413 C T CSMD2 Missense_Mutation p.E2359K 0.16 deleterious(0.03) possibly_damaging(0.794) TCGA-EE-A2MR-06 1 34070913 34070913 C T CSMD2 Silent p.R2169R 0.10 TCGA-EE-A2MR-06 1 34090197 34090197 G A CSMD2 Silent p.S1809S 0.13 TCGA-EE-A2MR-06 1 34112369 34112369 G A CSMD2 Silent p.L1511L 0.28 TCGA-EE-A2MR-06 1 34684359 34684359 T A C1orf94 Missense_Mutation p.F598L 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MR-06 1 35227422 35227422 C T GJB4 Silent p.F189F 0.20 TCGA-EE-A2MR-06 1 3548160 3548160 G A WRAP73 Silent p.L370L 0.08 TCGA-EE-A2MR-06 1 35863062 35863062 C T ZMYM4 Missense_Mutation p.P1039S 0.09 tolerated(0.08) benign(0.007) TCGA-EE-A2MR-06 1 35936467 35936467 C T KIAA0319L Silent p.S370S 0.20 TCGA-EE-A2MR-06 1 35944601 35944601 C T KIAA0319L Silent p.Q293Q 0.11 TCGA-EE-A2MR-06 1 36026527 36026527 C T NCDN Missense_Mutation p.R259W 0.09 deleterious(0.02) possibly_damaging(0.589) TCGA-EE-A2MR-06 1 36205107 36205107 T C CLSPN Missense_Mutation p.D1056G 0.25 deleterious(0.04) benign(0.049) TCGA-EE-A2MR-06 1 36282515 36282515 C T AGO4 Missense_Mutation p.R18C 0.17 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 1 36411312 36411312 C T AGO3 Silent p.P13P 0.14 TCGA-EE-A2MR-06 1 36553081 36553081 C T TEKT2 Silent p.H299H 0.17 TCGA-EE-A2MR-06 1 36757051 36757051 C T THRAP3 Missense_Mutation p.R608C 0.35 tolerated(0.05) benign(0.003) TCGA-EE-A2MR-06 1 3686416 3686416 G A CCDC27 Missense_Mutation p.E605K 0.16 deleterious(0) possibly_damaging(0.674) TCGA-EE-A2MR-06 1 37307487 37307487 G A GRIK3 Silent p.D460D 0.17 TCGA-EE-A2MR-06 1 37319298 37319298 C T GRIK3 Missense_Mutation p.R377Q 0.30 tolerated(0.22) benign(0.385) TCGA-EE-A2MR-06 1 37346335 37346335 C T GRIK3 Silent p.V150V 0.21 TCGA-EE-A2MR-06 1 37356579 37356579 G A GRIK3 Silent p.T78T 0.11 TCGA-EE-A2MR-06 1 3784541 3784541 T C DFFB Missense_Mutation p.L145S 0.11 deleterious(0) possibly_damaging(0.629) TCGA-EE-A2MR-06 1 38023281 38023281 C T DNALI1 Silent p.P75P 0.07 TCGA-EE-A2MR-06 1 38172709 38172709 G A CDCA8 Silent p.E257E 0.24 TCGA-EE-A2MR-06 1 38192815 38192815 G A EPHA10 Silent p.L577L 0.10 TCGA-EE-A2MR-06 1 38260270 38260270 C T MANEAL Missense_Mutation p.A139V 0.11 tolerated(0.28) possibly_damaging(0.864) TCGA-EE-A2MR-06 1 38353980 38353980 G A INPP5B Silent p.S278S 0.12 TCGA-EE-A2MR-06 1 38465025 38465025 G A FHL3 Silent p.I20I 0.16 TCGA-EE-A2MR-06 1 39341345 39341345 C T GJA9 Silent p.R142R 0.21 TCGA-EE-A2MR-06 1 39765950 39765950 C T MACF1 Silent p.I855I 0.14 TCGA-EE-A2MR-06 1 39876768 39876768 C T KIAA0754 Silent p.P141P 0.19 TCGA-EE-A2MR-06 1 39878166 39878166 C T KIAA0754 Silent p.F607F 0.11 TCGA-EE-A2MR-06 1 39905145 39905145 C T MACF1 Silent p.I4081I 0.10 TCGA-EE-A2MR-06 1 40029401 40029401 G A PABPC4 Missense_Mutation p.A518V 0.09 tolerated(0.2) benign(0.103) TCGA-EE-A2MR-06 1 40363568 40363568 C T MYCL Missense_Mutation p.V221M 0.10 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 1 40776925 40776925 G A COL9A2 Missense_Mutation p.P185S 0.39 tolerated(0.37) possibly_damaging(0.876) TCGA-EE-A2MR-06 1 40980366 40980366 C T EXO5 Silent p.S50S 0.26 TCGA-EE-A2MR-06 1 41304053 41304053 C T KCNQ4 Missense_Mutation p.S649L 0.10 deleterious(0.01) possibly_damaging(0.71) TCGA-EE-A2MR-06 1 41450608 41450608 C T CTPS1 Silent p.Y94Y 0.13 TCGA-EE-A2MR-06 1 42045703 42045703 G A HIVEP3 Missense_Mutation p.S1589L 0.20 benign(0.293) TCGA-EE-A2MR-06 1 42047703 42047703 G A HIVEP3 Silent p.F922F 0.15 TCGA-EE-A2MR-06 1 42049977 42049977 G A HIVEP3 Silent p.F164F 0.07 TCGA-EE-A2MR-06 1 43212831 43212831 C T LEPRE1 Missense_Mutation p.E723K 0.15 tolerated_low_confidence(0.9) benign(0) TCGA-EE-A2MR-06 1 43296111 43296111 C A ERMAP Intron 0.35 TCGA-EE-A2MR-06 1 43647263 43647265 CGC TG WDR65 Frame_Shift_Del p.A73Vfs*71 0.18 TCGA-EE-A2MR-06 1 43675659 43675659 C T WDR65 Silent p.T667T 0.09 TCGA-EE-A2MR-06 1 43854021 43854021 A C MED8 Missense_Mutation p.F29V 0.09 deleterious(0.02) probably_damaging(0.929) TCGA-EE-A2MR-06 1 43855460 43855460 G A MED8 5'UTR 0.19 TCGA-EE-A2MR-06 1 43885473 43885473 C T SZT2 Silent p.I316I 0.11 TCGA-EE-A2MR-06 1 43903465 43903465 C T SZT2 Missense_Mutation p.P2077S 0.10 tolerated(0.72) benign(0.135) TCGA-EE-A2MR-06 1 44085016 44085016 G A PTPRF Missense_Mutation p.M1568I 0.18 tolerated(1) benign(0.031) TCGA-EE-A2MR-06 1 44432451 44432451 C T IPO13 Silent p.F840F 0.17 TCGA-EE-A2MR-06 1 44467119 44467119 G A SLC6A9 Silent p.S454S 0.22 TCGA-EE-A2MR-06 1 44475743 44475743 G A SLC6A9 Silent p.I144I 0.13 TCGA-EE-A2MR-06 1 44595425 44595425 C T KLF17 Missense_Mutation p.S161L 0.14 deleterious(0.01) possibly_damaging(0.76) TCGA-EE-A2MR-06 1 44877835 44877835 C T RNF220 Silent p.S22S 0.16 TCGA-EE-A2MR-06 1 45205647 45205647 C T KIF2C Missense_Mutation p.L15F 0.12 tolerated(0.18) probably_damaging(0.958) TCGA-EE-A2MR-06 1 45253068 45253068 G A BEST4 Missense_Mutation p.L75F 0.20 deleterious(0.04) benign(0.333) TCGA-EE-A2MR-06 1 45288223 45288223 G A PTCH2 Missense_Mutation p.S1159F 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MR-06 1 45297674 45297674 G A PTCH2 Silent p.P166P 0.18 TCGA-EE-A2MR-06 1 45475742 45475742 G T HECTD3 Missense_Mutation p.F225L 0.17 tolerated(0.12) benign(0.063) TCGA-EE-A2MR-06 1 45484391 45484391 C T ZSWIM5 Missense_Mutation p.G1098E 0.11 tolerated(0.12) unknown(0) TCGA-EE-A2MR-06 1 46073635 46073635 C T NASP Missense_Mutation p.A351V 0.13 deleterious_low_confidence(0.01) benign(0.018) TCGA-EE-A2MR-06 1 46496338 46496338 C T MAST2 Silent p.T871T 0.29 TCGA-EE-A2MR-06 1 46976227 46976227 C T DMBX1 Silent p.L78L 0.09 TCGA-EE-A2MR-06 1 47101462 47101462 G A ATPAF1 Nonsense_Mutation p.Q348* 0.24 TCGA-EE-A2MR-06 1 47279701 47279701 C T CYP4B1 Silent p.F247F 0.16 TCGA-EE-A2MR-06 1 47282724 47282724 G A CYP4B1 Missense_Mutation p.D360N 0.09 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2MR-06 1 47501699 47501699 C T CYP4X1 Missense_Mutation p.P211S 0.17 tolerated(1) benign(0.026) TCGA-EE-A2MR-06 1 47515128 47515128 C T CYP4X1 Missense_Mutation p.S436F 0.11 tolerated(0.09) benign(0.343) TCGA-EE-A2MR-06 1 47606461 47606461 G A CYP4A22 Missense_Mutation p.D69N 0.12 tolerated(0.17) benign(0.036) TCGA-EE-A2MR-06 1 47609046 47609046 G A CYP4A22 Missense_Mutation p.G206S 0.25 tolerated(0.95) benign(0.26) TCGA-EE-A2MR-06 1 47614387 47614387 G A CYP4A22 Missense_Mutation p.R493Q 0.23 tolerated(1) benign(0.086) TCGA-EE-A2MR-06 1 47770613 47770613 A G STIL Missense_Mutation p.W34R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 4834516 4834516 C T AJAP1 Missense_Mutation p.P398L 0.11 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MR-06 1 48688462 48688462 G A SLC5A9 Silent p.R18R 0.21 TCGA-EE-A2MR-06 1 53547716 53547716 G A PODN Silent p.Q623Q 0.09 TCGA-EE-A2MR-06 1 53556231 53556231 C T SLC1A7 Intron 0.38 TCGA-EE-A2MR-06 1 53600019 53600019 C T SLC1A7 Intron 0.32 TCGA-EE-A2MR-06 1 53925110 53925110 G A DMRTB1 5'UTR 0.22 TCGA-EE-A2MR-06 1 53995570 53995570 C T GLIS1 Missense_Mutation p.R284K 0.23 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MR-06 1 54258908 54258908 G A NDC1 Silent p.F543F 0.26 TCGA-EE-A2MR-06 1 54474595 54474595 C T LDLRAD1 3'UTR 0.08 TCGA-EE-A2MR-06 1 55072914 55072914 C T ACOT11 Missense_Mutation p.S493L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 55139785 55139785 G A MROH7 Missense_Mutation p.G633S 0.08 deleterious(0.04) probably_damaging(0.943) TCGA-EE-A2MR-06 1 55186844 55186844 C T TTC4 Missense_Mutation p.R134C 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 1 55266612 55266612 G A TTC22 Silent p.F75F 0.29 TCGA-EE-A2MR-06 1 55340859 55340859 G A DHCR24 Silent p.I173I 0.14 TCGA-EE-A2MR-06 1 55464783 55464783 C A BSND 5'UTR 0.15 TCGA-EE-A2MR-06 1 55464784 55464784 C T BSND 5'UTR 0.14 TCGA-EE-A2MR-06 1 58999681 58999681 G A OMA1 Missense_Mutation p.H319Y 0.18 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MR-06 1 5964857 5964857 G A NPHP4 Nonsense_Mutation p.Q655* 0.20 TCGA-EE-A2MR-06 1 60456402 60456402 G A C1orf87 Silent p.F528F 0.27 TCGA-EE-A2MR-06 1 6188166 6188166 C T CHD5 Missense_Mutation p.M1281I 0.09 deleterious(0.01) benign(0.206) TCGA-EE-A2MR-06 1 6202196 6202196 G A CHD5 Missense_Mutation p.R810C 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MR-06 1 62456008 62456008 G A INADL Missense_Mutation p.R1280Q 0.27 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 1 62550251 62550251 G A INADL Missense_Mutation p.M1436I 0.10 tolerated(0.11) possibly_damaging(0.891) TCGA-EE-A2MR-06 1 62672685 62672685 G A L1TD1 Missense_Mutation p.D129N 0.16 tolerated(0.1) unknown(0) TCGA-EE-A2MR-06 1 62675974 62675974 C T L1TD1 Missense_Mutation p.P510S 0.12 tolerated(0.23) benign(0.278) TCGA-EE-A2MR-06 1 62747274 62747274 C T KANK4 5'UTR 0.22 TCGA-EE-A2MR-06 1 62943568 62943568 G A DOCK7 Intron 0.13 TCGA-EE-A2MR-06 1 63113907 63113907 G A DOCK7 Missense_Mutation p.S201L 0.16 tolerated(0.54) benign(0.015) TCGA-EE-A2MR-06 1 6529212 6529212 C A PLEKHG5 Missense_Mutation p.E792D 0.12 tolerated(0.24) possibly_damaging(0.801) TCGA-EE-A2MR-06 1 6530577 6530577 C T PLEKHG5 Missense_Mutation p.E636K 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A2MR-06 1 65330539 65330539 G A JAK1 Silent p.F369F 0.11 TCGA-EE-A2MR-06 1 66058371 66058371 C T LEPR Missense_Mutation p.P176S 0.27 tolerated(0.82) benign(0.016) TCGA-EE-A2MR-06 1 6631087 6631087 G A TAS1R1 Missense_Mutation p.D104N 0.11 deleterious(0.03) probably_damaging(0.942) TCGA-EE-A2MR-06 1 6680349 6680349 C T PHF13 Nonsense_Mutation p.R210* 0.24 TCGA-EE-A2MR-06 1 67154915 67154915 C T SGIP1 Missense_Mutation p.S467F 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2MR-06 1 68512546 68512546 G A DIRAS3 Silent p.F145F 0.24 TCGA-EE-A2MR-06 1 70505260 70505260 C T LRRC7 Silent p.S1213S 0.19 TCGA-EE-A2MR-06 1 74957862 74957862 C T TNNI3K Missense_Mutation p.P856S 0.26 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-EE-A2MR-06 1 74957863 74957863 C T TNNI3K Missense_Mutation p.P856L 0.26 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-EE-A2MR-06 1 76387881 76387881 G A ASB17 Missense_Mutation p.P189S 0.12 deleterious(0.01) benign(0.008) TCGA-EE-A2MR-06 1 7798259 7798259 T A CAMTA1 Missense_Mutation p.L1300H 0.21 tolerated_low_confidence(0.43) benign(0.088) TCGA-EE-A2MR-06 1 78177434 78177434 G A USP33 Missense_Mutation p.R833W 0.23 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MR-06 1 78560802 78560802 C T GIPC2 Missense_Mutation p.P198L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 7887787 7887787 T G PER3 Missense_Mutation p.L925W 0.21 deleterious(0) probably_damaging(0.926) TCGA-EE-A2MR-06 1 79403901 79403901 G A ELTD1 Missense_Mutation p.L154F 0.30 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MR-06 1 82402474 82402474 C T LPHN2 Missense_Mutation p.P117L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 1 82456558 82456558 C T LPHN2 Missense_Mutation p.S1314F 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MR-06 1 8418357 8418357 G A RERE Missense_Mutation p.P1413L 0.22 unknown(0) TCGA-EE-A2MR-06 1 8418589 8418589 G A RERE Missense_Mutation p.P1336S 0.16 unknown(0) TCGA-EE-A2MR-06 1 85113093 85113093 G A SSX2IP 3'UTR 0.25 TCGA-EE-A2MR-06 1 86283740 86283740 G A COL24A1 Missense_Mutation p.P1274S 0.09 tolerated(0.34) benign(0.345) TCGA-EE-A2MR-06 1 86453318 86453318 C T COL24A1 Missense_Mutation p.G777E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 1 879131 879131 G A SAMD11 Silent p.E581E 0.13 TCGA-EE-A2MR-06 1 89661103 89661103 G A GBP4 Silent p.F80F 0.18 TCGA-EE-A2MR-06 1 89846009 89846009 A G GBP6 Silent p.K230K 0.26 TCGA-EE-A2MR-06 1 89889921 89889921 G A GBP1P1 RNA 0.10 TCGA-EE-A2MR-06 1 9063374 9063374 C T SLC2A7 Silent p.K508K 0.10 TCGA-EE-A2MR-06 1 9085128 9085128 G A SLC2A7 Silent p.L19L 0.21 TCGA-EE-A2MR-06 1 9097990 9097990 T C SLC2A5 Missense_Mutation p.N423S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MR-06 1 9101987 9101987 G A SLC2A5 Missense_Mutation p.S143F 0.17 tolerated(0.24) probably_damaging(1) TCGA-EE-A2MR-06 1 9165602 9165602 G A GPR157 Silent p.F245F 0.21 TCGA-EE-A2MR-06 1 92441921 92441921 C T BRDT Missense_Mutation p.P182S 0.16 tolerated(0.08) benign(0.002) TCGA-EE-A2MR-06 1 92442784 92442784 A G BRDT Missense_Mutation p.K268R 0.23 tolerated(0.06) benign(0.032) TCGA-EE-A2MR-06 1 92604904 92604904 C T BTBD8 Intron 0.17 TCGA-EE-A2MR-06 1 9416581 9416581 C T SPSB1 Missense_Mutation p.P211S 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 1 94496618 94496618 G A ABCA4 Missense_Mutation p.P1396L 0.20 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A2MR-06 1 97236284 97236284 C T PTBP2 Silent p.T103T 0.08 TCGA-EE-A2MR-06 1 97547928 97547928 G A DPYD Silent p.N955N 0.16 TCGA-EE-A2MR-06 1 979003 979003 C T AGRN Silent p.A563A 0.18 TCGA-EE-A2MR-06 1 981176 981176 C T AGRN Missense_Mutation p.S867L 0.10 deleterious(0) possibly_damaging(0.651) TCGA-EE-A2MR-06 1 98165056 98165056 A T DPYD Silent p.P177P 0.10 TCGA-EE-A2MR-06 20 10273630 10273630 C T SNAP25 Intron 0.15 TCGA-EE-A2MR-06 20 13858217 13858217 G T SEL1L2 Missense_Mutation p.F325L 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MR-06 20 1517864 1517864 C T SIRPD Missense_Mutation p.E172K 0.09 deleterious_low_confidence(0.02) benign(0.018) TCGA-EE-A2MR-06 20 1616172 1616172 C T SIRPG Silent p.R274R 0.10 TCGA-EE-A2MR-06 20 17716310 17716310 G A BANF2 Missense_Mutation p.A50T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 20 18507026 18507026 C T SEC23B Missense_Mutation p.P282S 0.15 tolerated(0.06) possibly_damaging(0.817) TCGA-EE-A2MR-06 20 19977361 19977361 C T RIN2 Silent p.L796L 0.14 TCGA-EE-A2MR-06 20 20033115 20033115 G A CRNKL1 Silent p.L119L 0.17 TCGA-EE-A2MR-06 20 20033116 20033116 G A CRNKL1 Silent p.V118V 0.17 TCGA-EE-A2MR-06 20 20269273 20269273 G A C20orf26 Silent p.E939E 0.13 TCGA-EE-A2MR-06 20 21687649 21687649 C T PAX1 Missense_Mutation p.P287L 0.13 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 20 22562415 22562415 G A FOXA2 3'UTR 0.15 TCGA-EE-A2MR-06 20 22562578 22562578 C T FOXA2 Silent p.T434T 0.11 TCGA-EE-A2MR-06 20 2290335 2290335 G A TGM3 Missense_Mutation p.A14T 0.11 tolerated(0.25) benign(0.004) TCGA-EE-A2MR-06 20 23016468 23016468 C T SSTR4 Silent p.S116S 0.15 TCGA-EE-A2MR-06 20 2321186 2321186 C T TGM3 Missense_Mutation p.P681S 0.14 tolerated(0.39) benign(0.035) TCGA-EE-A2MR-06 20 23966798 23966798 G A GGTLC1 Silent p.L73L 0.15 TCGA-EE-A2MR-06 20 2573039 2573039 C T TMC2 Silent p.V306V 0.11 TCGA-EE-A2MR-06 20 2592920 2592920 C A TMC2 Silent p.V559V 0.11 TCGA-EE-A2MR-06 20 3003365 3003365 C T PTPRA Silent p.V453V 0.13 TCGA-EE-A2MR-06 20 30408108 30408108 G A MYLK2 Missense_Mutation p.G78R 0.09 deleterious_low_confidence(0.04) benign(0.037) TCGA-EE-A2MR-06 20 30408109 30408109 G A MYLK2 Missense_Mutation p.G78E 0.09 tolerated_low_confidence(0.09) benign(0.424) TCGA-EE-A2MR-06 20 30432759 30432759 G A FOXS1 Missense_Mutation p.S196F 0.10 deleterious(0.03) benign(0.08) TCGA-EE-A2MR-06 20 30486309 30486309 C T TTLL9 Silent p.T49T 0.09 TCGA-EE-A2MR-06 20 30672323 30672323 G A HCK Missense_Mutation p.G271E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 30674595 30674595 G A HCK Missense_Mutation p.E334K 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2MR-06 20 31017746 31017746 C T ASXL1 Missense_Mutation p.S203F 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 20 3128843 3128843 G A FASTKD5 Missense_Mutation p.R292C 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 31376724 31376724 C T DNMT3B Missense_Mutation p.P240L 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 20 31572946 31572946 G A SUN5 Nonsense_Mutation p.Q315* 0.14 TCGA-EE-A2MR-06 20 31606532 31606532 C T BPIFB2 Silent p.S253S 0.15 TCGA-EE-A2MR-06 20 31606600 31606600 C T BPIFB2 Missense_Mutation p.A276V 0.18 tolerated(0.23) benign(0.04) TCGA-EE-A2MR-06 20 31621995 31621995 G A BPIFB6 Silent p.L67L 0.18 TCGA-EE-A2MR-06 20 31873905 31873905 T C BPIFB1 Missense_Mutation p.L9P 0.09 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MR-06 20 32344962 32344962 C T ZNF341 Silent p.N250N 0.12 TCGA-EE-A2MR-06 20 32873263 32873263 G A AHCY Missense_Mutation p.H384Y 0.14 tolerated_low_confidence(1) benign(0.01) TCGA-EE-A2MR-06 20 33026293 33026293 G A ITCH Missense_Mutation p.G220E 0.10 tolerated(0.16) benign(0.001) TCGA-EE-A2MR-06 20 33437843 33437843 G A GGT7 Silent p.T582T 0.18 TCGA-EE-A2MR-06 20 33440071 33440071 G A GGT7 Silent p.L492L 0.10 TCGA-EE-A2MR-06 20 33509371 33509371 C T ACSS2 Missense_Mutation p.P492S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 33567246 33567246 G A MYH7B Missense_Mutation p.V91I 0.17 benign(0.006) TCGA-EE-A2MR-06 20 33582181 33582181 G A MYH7B Missense_Mutation p.D935N 0.12 probably_damaging(0.999) TCGA-EE-A2MR-06 20 33834663 33834663 C T MMP24 Silent p.G89G 0.12 TCGA-EE-A2MR-06 20 33875357 33875357 G A FAM83C Missense_Mutation p.L409F 0.17 tolerated_low_confidence(0.29) benign(0.003) TCGA-EE-A2MR-06 20 34022080 34022080 C T GDF5 Missense_Mutation p.R378Q 0.15 deleterious(0) benign(0.106) TCGA-EE-A2MR-06 20 34022665 34022665 C T GDF5OS Missense_Mutation p.L237F 0.16 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-EE-A2MR-06 20 34129830 34129830 C T ERGIC3 5'UTR 0.36 TCGA-EE-A2MR-06 20 34145016 34145016 C T ERGIC3 Silent p.F361F 0.08 TCGA-EE-A2MR-06 20 35061005 35061005 C T DLGAP4 Silent p.S295S 0.14 TCGA-EE-A2MR-06 20 35219364 35219364 C T TGIF2 Missense_Mutation p.R82W 0.10 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MR-06 20 35242260 35242260 C T SLA2 3'UTR 0.09 TCGA-EE-A2MR-06 20 3543884 3543884 C T ATRN Missense_Mutation p.R554C 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 20 35441193 35441193 G A SOGA1 Missense_Mutation p.R791C 0.15 deleterious(0.03) possibly_damaging(0.799) TCGA-EE-A2MR-06 20 35509089 35509089 G A TLDC2 Missense_Mutation p.R125Q 0.09 deleterious(0.04) benign(0.114) TCGA-EE-A2MR-06 20 35632075 35632075 G A RBL1 Intron 0.15 TCGA-EE-A2MR-06 20 35852293 35852293 A T RPN2 Missense_Mutation p.I369F 0.10 deleterious(0) possibly_damaging(0.529) TCGA-EE-A2MR-06 20 368793 368793 C T TRIB3 Silent p.L47L 0.18 TCGA-EE-A2MR-06 20 36937434 36937434 G A BPI Silent p.G120G 0.11 TCGA-EE-A2MR-06 20 3722937 3722937 G A HSPA12B Missense_Mutation p.E50K 0.09 tolerated_low_confidence(0.2) possibly_damaging(0.473) TCGA-EE-A2MR-06 20 37620139 37620139 C T DHX35 Missense_Mutation p.P165S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 39990462 39990462 C T EMILIN3 Missense_Mutation p.E583K 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 20 40033762 40033762 G A CHD6 Missense_Mutation p.P2540L 0.09 deleterious(0.05) benign(0.027) TCGA-EE-A2MR-06 20 40944371 40944371 C T PTPRT Missense_Mutation p.A711T 0.14 tolerated(0.44) benign(0.003) TCGA-EE-A2MR-06 20 40979300 40979300 C T PTPRT Silent p.L611L 0.15 TCGA-EE-A2MR-06 20 42089340 42089340 C T SRSF6 Intron 0.17 TCGA-EE-A2MR-06 20 43052967 43052967 C T HNF4A Intron 0.16 TCGA-EE-A2MR-06 20 43058182 43058182 G A HNF4A Silent p.Q434Q 0.06 TCGA-EE-A2MR-06 20 43804646 43804646 C T PI3 Missense_Mutation p.S75F 0.19 tolerated(0.71) benign(0.042) TCGA-EE-A2MR-06 20 43804673 43804673 C T PI3 Missense_Mutation p.A84V 0.16 tolerated(0.09) probably_damaging(0.938) TCGA-EE-A2MR-06 20 43804674 43804674 C T PI3 Silent p.A84A 0.17 TCGA-EE-A2MR-06 20 44005983 44005983 C T TP53TG5 Splice_Site p.X42_splice 0.22 TCGA-EE-A2MR-06 20 44515131 44515131 A G SPATA25 3'UTR 0.06 TCGA-EE-A2MR-06 20 44642347 44642347 C T MMP9 Silent p.F554F 0.08 TCGA-EE-A2MR-06 20 44670089 44670089 T C SLC12A5 Missense_Mutation p.F349L 0.11 tolerated(0.78) benign(0.001) TCGA-EE-A2MR-06 20 44691067 44691067 G A NCOA5 Missense_Mutation p.P538S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 44983827 44983827 G A SLC35C2 Silent p.F154F 0.16 TCGA-EE-A2MR-06 20 45188825 45188825 G A SLC13A3 Missense_Mutation p.L549F 0.11 tolerated(1) benign(0.053) TCGA-EE-A2MR-06 20 45194880 45194880 G A SLC13A3 Silent p.V494V 0.09 TCGA-EE-A2MR-06 20 45353692 45353692 C T SLC2A10 Missense_Mutation p.P6L 0.13 tolerated(0.43) benign(0.003) TCGA-EE-A2MR-06 20 45354272 45354272 C T SLC2A10 Silent p.I199I 0.10 TCGA-EE-A2MR-06 20 45717956 45717956 G A EYA2 Missense_Mutation p.G247E 0.11 deleterious(0.02) probably_damaging(0.927) TCGA-EE-A2MR-06 20 45878181 45878181 G A ZMYND8 Nonsense_Mutation p.R542* 0.19 TCGA-EE-A2MR-06 20 46264393 46264393 C T NCOA3 Silent p.I480I 0.13 TCGA-EE-A2MR-06 20 46365616 46365616 G A SULF2 Silent p.F82F 0.19 TCGA-EE-A2MR-06 20 47249068 47249068 G T PREX1 Silent p.A1459A 0.21 TCGA-EE-A2MR-06 20 47309289 47309289 G A PREX1 Silent p.S319S 0.09 TCGA-EE-A2MR-06 20 47612360 47612360 C T ARFGEF2 Silent p.A1054A 0.08 TCGA-EE-A2MR-06 20 47990955 47990955 C T KCNB1 Missense_Mutation p.G381E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 20 47991122 47991122 C T KCNB1 Silent p.R325R 0.13 TCGA-EE-A2MR-06 20 47991182 47991182 G A KCNB1 Silent p.L305L 0.10 TCGA-EE-A2MR-06 20 50049127 50049127 C T NFATC2 Silent p.T733T 0.14 TCGA-EE-A2MR-06 20 50139938 50139938 G A NFATC2 Missense_Mutation p.S281F 0.22 deleterious(0) benign(0.311) TCGA-EE-A2MR-06 20 50140003 50140003 G A NFATC2 Silent p.A259A 0.15 TCGA-EE-A2MR-06 20 50406836 50406836 G A SALL4 Missense_Mutation p.S729F 0.14 deleterious(0.01) possibly_damaging(0.529) TCGA-EE-A2MR-06 20 5157253 5157253 C T CDS2 Intron 0.10 TCGA-EE-A2MR-06 20 51870456 51870456 G A TSHZ2 Silent p.R153R 0.11 TCGA-EE-A2MR-06 20 51872921 51872921 C T TSHZ2 Missense_Mutation p.S975L 0.10 tolerated(0.46) benign(0.354) TCGA-EE-A2MR-06 20 52601914 52601914 G A BCAS1 Missense_Mutation p.S351F 0.12 deleterious(0.02) possibly_damaging(0.689) TCGA-EE-A2MR-06 20 53208205 53208205 G A DOK5 Missense_Mutation p.E154K 0.13 deleterious(0.01) possibly_damaging(0.645) TCGA-EE-A2MR-06 20 54823816 54823816 G A MC3R 5'UTR 0.09 TCGA-EE-A2MR-06 20 54824203 54824203 C T MC3R Missense_Mutation p.H102Y 0.20 deleterious(0.01) benign(0.31) TCGA-EE-A2MR-06 20 54824439 54824439 C T MC3R Silent p.I180I 0.20 TCGA-EE-A2MR-06 20 55093181 55093181 C T RTFDC1 Missense_Mutation p.P261S 0.13 tolerated(0.87) benign(0.002) TCGA-EE-A2MR-06 20 55758908 55758908 G A BMP7 Silent p.F276F 0.15 TCGA-EE-A2MR-06 20 56093683 56093683 C T CTCFL Intron 0.13 TCGA-EE-A2MR-06 20 56094368 56094368 G A CTCFL Missense_Mutation p.R274C 0.14 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MR-06 20 56136651 56136651 G A PCK1 Missense_Mutation p.E62K 0.14 tolerated(0.56) benign(0.001) TCGA-EE-A2MR-06 20 56191482 56191482 C T ZBP1 Missense_Mutation p.G26D 0.13 tolerated(0.12) probably_damaging(0.989) TCGA-EE-A2MR-06 20 57246282 57246282 C T STX16 Missense_Mutation p.R241C 0.22 tolerated(0.09) possibly_damaging(0.601) TCGA-EE-A2MR-06 20 57429085 57429085 C T GNAS Silent p.F255F 0.33 TCGA-EE-A2MR-06 20 57430112 57430112 C T GNAS Missense_Mutation p.R598C 0.10 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-EE-A2MR-06 20 57485864 57485864 C T GNAS Missense_Mutation p.R1032C 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 20 57598953 57598953 G A TUBB1 Silent p.E157E 0.07 TCGA-EE-A2MR-06 20 57766084 57766084 C T ZNF831 Missense_Mutation p.P4S 0.13 tolerated(0.29) probably_damaging(0.992) TCGA-EE-A2MR-06 20 57766566 57766566 G A ZNF831 Silent p.R164R 0.10 TCGA-EE-A2MR-06 20 57829518 57829518 G A ZNF831 Missense_Mutation p.R1585K 0.21 tolerated(0.39) benign(0.002) TCGA-EE-A2MR-06 20 58349515 58349515 G A PHACTR3 Missense_Mutation p.E382K 0.10 deleterious(0.04) possibly_damaging(0.883) TCGA-EE-A2MR-06 20 58564129 58564129 C T CDH26 Silent p.P398P 0.10 TCGA-EE-A2MR-06 20 58564203 58564203 C T CDH26 Missense_Mutation p.P423L 0.09 deleterious(0.04) possibly_damaging(0.823) TCGA-EE-A2MR-06 20 6021700 6021700 C T LRRN4 Missense_Mutation p.D731N 0.19 tolerated(0.07) benign(0.014) TCGA-EE-A2MR-06 20 60448807 60448807 G A CDH4 Missense_Mutation p.A301T 0.17 deleterious(0) probably_damaging(0.966) TCGA-EE-A2MR-06 20 60511930 60511930 G A CDH4 Missense_Mutation p.D894N 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A2MR-06 20 60589653 60589653 G A TAF4 Missense_Mutation p.R491C 0.29 probably_damaging(0.982) TCGA-EE-A2MR-06 20 60714804 60714804 C T PSMA7 Intron 0.12 TCGA-EE-A2MR-06 20 60886036 60886036 G A LAMA5 Silent p.F3401F 0.25 TCGA-EE-A2MR-06 20 60901999 60901999 G A LAMA5 Silent p.L1712L 0.11 TCGA-EE-A2MR-06 20 60921218 60921218 G A LAMA5 Nonsense_Mutation p.R446* 0.13 TCGA-EE-A2MR-06 20 61039866 61039866 C T GATA5 3'UTR 0.18 TCGA-EE-A2MR-06 20 61296383 61296383 C T SLCO4A1 Missense_Mutation p.P407S 0.11 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MR-06 20 61441003 61441003 C T OGFR Missense_Mutation p.S129F 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 20 61452568 61452568 G A COL9A3 Silent p.G115G 0.17 TCGA-EE-A2MR-06 20 61511407 61511407 G A DIDO1 Silent p.F1967F 0.12 TCGA-EE-A2MR-06 20 61528027 61528027 G A DIDO1 Missense_Mutation p.A637V 0.14 benign(0.035) TCGA-EE-A2MR-06 20 61595591 61595591 C T SLC17A9 Silent p.F278F 0.09 TCGA-EE-A2MR-06 20 61929359 61929359 G A COL20A1 Silent p.V60V 0.27 TCGA-EE-A2MR-06 20 61943027 61943027 G A COL20A1 Silent p.R530R 0.10 TCGA-EE-A2MR-06 20 61981794 61981794 G A CHRNA4 Silent p.I323I 0.14 TCGA-EE-A2MR-06 20 62187047 62187047 G A C20orf195 Missense_Mutation p.D11N 0.17 tolerated_low_confidence(0.61) benign(0.004) TCGA-EE-A2MR-06 20 62191963 62191963 G A HELZ2 Silent p.L2457L 0.15 TCGA-EE-A2MR-06 20 62196998 62196998 A T HELZ2 Silent p.A1059A 0.09 TCGA-EE-A2MR-06 20 62200346 62200346 G A HELZ2 Silent p.T365T 0.10 TCGA-EE-A2MR-06 20 62229133 62229133 G A GMEB2 Silent p.I146I 0.17 TCGA-EE-A2MR-06 20 62654191 62654191 T G PRPF6 Missense_Mutation p.W577G 0.14 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MR-06 20 62839781 62839781 G A MYT1 Missense_Mutation p.G411E 0.14 benign(0.339) TCGA-EE-A2MR-06 20 8862439 8862439 C A PLCB1 Silent p.P1198P 0.29 TCGA-EE-A2MR-06 20 9388636 9388636 C T PLCB4 Missense_Mutation p.H562Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 20 9434098 9434098 G A PLCB4 Missense_Mutation p.M983I 0.40 tolerated(0.73) benign(0) TCGA-EE-A2MR-06 20 9523344 9523344 G A PAK7 Silent p.I631I 0.12 TCGA-EE-A2MR-06 21 10862823 10862823 C T IGHV1OR21-1 Missense_Mutation p.S40F 0.11 deleterious(0.02) possibly_damaging(0.7) TCGA-EE-A2MR-06 21 10998311 10998311 C T TPTE RNA 0.11 TCGA-EE-A2MR-06 21 15599583 15599583 T G RBM11 Missense_Mutation p.F272C 0.10 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MR-06 21 17191061 17191061 C T USP25 Nonsense_Mutation p.Q326* 0.21 TCGA-EE-A2MR-06 21 18977308 18977308 G A BTG3 Missense_Mutation p.R61C 0.33 deleterious(0) benign(0.233) TCGA-EE-A2MR-06 21 19629116 19629116 G A CHODL Missense_Mutation p.G124R 0.15 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MR-06 21 27945184 27945184 G A CYYR1 Intron 0.10 TCGA-EE-A2MR-06 21 28296747 28296747 C T ADAMTS5 Missense_Mutation p.M806I 0.09 deleterious(0.03) possibly_damaging(0.577) TCGA-EE-A2MR-06 21 31691921 31691921 G A KRTAP26-1 Missense_Mutation p.P145S 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MR-06 21 31797893 31797893 C T KRTAP13-3 Missense_Mutation p.G113E 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A2MR-06 21 31864179 31864179 G A KRTAP19-3 Missense_Mutation p.R33C 0.08 deleterious_low_confidence(0.05) unknown(0) TCGA-EE-A2MR-06 21 31864180 31864180 G A KRTAP19-3 Silent p.F32F 0.07 TCGA-EE-A2MR-06 21 32253682 32253682 G A KRTAP11-1 Silent p.D54D 0.25 TCGA-EE-A2MR-06 21 32502582 32502582 G A TIAM1 Nonsense_Mutation p.R1332* 0.08 TCGA-EE-A2MR-06 21 32513814 32513814 C T TIAM1 Missense_Mutation p.D1162N 0.19 deleterious(0.03) benign(0.333) TCGA-EE-A2MR-06 21 33887522 33887522 G A EVA1C 3'UTR 0.12 TCGA-EE-A2MR-06 21 37603235 37603235 C T DOPEY2 Missense_Mutation p.S718L 0.16 tolerated(0.31) benign(0) TCGA-EE-A2MR-06 21 37833692 37833692 C T CLDN14 Missense_Mutation p.G101E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 21 39087194 39087194 C T KCNJ6 Nonsense_Mutation p.W89* 0.19 TCGA-EE-A2MR-06 21 39671972 39671972 C T KCNJ15 Silent p.P263P 0.26 TCGA-EE-A2MR-06 21 40717139 40717139 G A HMGN1 Missense_Mutation p.A63V 0.16 tolerated(0.13) benign(0.019) TCGA-EE-A2MR-06 21 40795084 40795084 C T LCA5L Missense_Mutation p.E219K 0.18 tolerated(0.06) possibly_damaging(0.607) TCGA-EE-A2MR-06 21 40883678 40883678 G A SH3BGR Silent p.E232E 0.24 TCGA-EE-A2MR-06 21 42080489 42080489 G A DSCAM Silent p.F84F 0.23 TCGA-EE-A2MR-06 21 42694973 42694973 G A FAM3B Missense_Mutation p.G48E 0.11 tolerated(0.08) possibly_damaging(0.844) TCGA-EE-A2MR-06 21 42839758 42839758 C T TMPRSS2 Missense_Mutation p.G494E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 21 42860341 42860341 C T TMPRSS2 Missense_Mutation p.G179E 0.20 deleterious(0.03) possibly_damaging(0.519) TCGA-EE-A2MR-06 21 43176851 43176851 G A RIPK4 Missense_Mutation p.S103F 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 21 43522463 43522463 C T C21orf128 3'UTR 0.18 TCGA-EE-A2MR-06 21 43714762 43714762 C T ABCG1 Silent p.S600S 0.07 TCGA-EE-A2MR-06 21 45774547 45774547 C T TRPM2 Missense_Mutation p.S61L 0.11 tolerated(0.07) possibly_damaging(0.696) TCGA-EE-A2MR-06 21 46032080 46032080 C T KRTAP10-8 Silent p.S21S 0.24 TCGA-EE-A2MR-06 21 46032628 46032628 G A KRTAP10-8 Missense_Mutation p.R204K 0.10 tolerated(0.28) unknown(0) TCGA-EE-A2MR-06 21 46604915 46604915 C T ADARB1 Missense_Mutation p.P532S 0.11 deleterious(0) benign(0.083) TCGA-EE-A2MR-06 21 47350754 47350754 C T PCBP3 Missense_Mutation p.S284L 0.20 tolerated(0.53) benign(0.001) TCGA-EE-A2MR-06 22 17072850 17072850 G A CCT8L2 Silent p.S197S 0.18 TCGA-EE-A2MR-06 22 17976544 17976544 C T CECR2 Missense_Mutation p.R70C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 22 18020370 18020370 G A CECR2 Missense_Mutation p.D568N 0.13 tolerated(0.09) benign(0.006) TCGA-EE-A2MR-06 22 18613675 18613675 C T TUBA8 Silent p.A374A 0.10 TCGA-EE-A2MR-06 22 19130258 19130258 G A DGCR14 Silent p.S95S 0.07 TCGA-EE-A2MR-06 22 19207416 19207416 G A CLTCL1 Missense_Mutation p.S966F 0.14 tolerated(0.26) benign(0.001) TCGA-EE-A2MR-06 22 19346936 19346936 G A HIRA Silent p.S719S 0.16 TCGA-EE-A2MR-06 22 19494939 19494939 C T CDC45 Silent p.S317S 0.16 TCGA-EE-A2MR-06 22 19706090 19706090 C T SEPT5 Intron 0.17 TCGA-EE-A2MR-06 22 21119942 21119942 G A PI4KA Missense_Mutation p.R790W 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 22 21329051 21329051 C T AIFM3 Silent p.I222I 0.10 TCGA-EE-A2MR-06 22 22550623 22550623 G A IGLV6-57 Silent p.L100L 0.09 TCGA-EE-A2MR-06 22 22599490 22599490 G A VPREB1 Missense_Mutation p.R60K 0.23 tolerated(1) benign(0.006) TCGA-EE-A2MR-06 22 22764309 22764309 C T IGLV1-40 Silent p.S17S 0.07 TCGA-EE-A2MR-06 22 22869805 22869805 C T ZNF280A Silent p.G50G 0.17 TCGA-EE-A2MR-06 22 22890509 22890509 G A PRAME Missense_Mutation p.P504S 0.10 tolerated(0.26) benign(0.284) TCGA-EE-A2MR-06 22 22892158 22892158 G A PRAME Nonsense_Mutation p.Q315* 0.21 TCGA-EE-A2MR-06 22 23523961 23523961 C T BCR Missense_Mutation p.P272S 0.21 tolerated_low_confidence(0.47) benign(0.011) TCGA-EE-A2MR-06 22 24121559 24121559 C T MMP11 Silent p.F98F 0.09 TCGA-EE-A2MR-06 22 25145727 25145727 C T PIWIL3 Nonsense_Mutation p.W383* 0.16 TCGA-EE-A2MR-06 22 25301109 25301109 G C SGSM1 Missense_Mutation p.G980R 0.09 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MR-06 22 25301110 25301110 G T SGSM1 Missense_Mutation p.G980V 0.09 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 22 25603188 25603188 C T CRYBB3 3'UTR 0.26 TCGA-EE-A2MR-06 22 26228958 26228958 C T MYO18B Silent p.P1018P 0.11 TCGA-EE-A2MR-06 22 26294330 26294330 G A MYO18B Silent p.K1575K 0.09 TCGA-EE-A2MR-06 22 26423026 26423026 G A MYO18B Silent p.G2362G 0.11 TCGA-EE-A2MR-06 22 26423375 26423375 G A MYO18B Missense_Mutation p.E2479K 0.10 tolerated(0.14) benign(0.234) TCGA-EE-A2MR-06 22 26688486 26688486 C T SEZ6L Missense_Mutation p.P70L 0.19 deleterious_low_confidence(0.01) benign(0.03) TCGA-EE-A2MR-06 22 26688487 26688487 C T SEZ6L Silent p.P70P 0.19 TCGA-EE-A2MR-06 22 26707777 26707777 G A SEZ6L Silent p.G575G 0.19 TCGA-EE-A2MR-06 22 29445697 29445697 C T ZNRF3 Missense_Mutation p.P510S 0.12 deleterious(0.02) possibly_damaging(0.792) TCGA-EE-A2MR-06 22 29533450 29533450 C T KREMEN1 Missense_Mutation p.A251V 0.10 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A2MR-06 22 29611517 29611517 T C EMID1 Missense_Mutation p.Y73H 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 22 29630187 29630187 G A EMID1 Missense_Mutation p.R343K 0.19 tolerated(0.18) benign(0.015) TCGA-EE-A2MR-06 22 29693828 29693828 C T EWSR1 Nonsense_Mutation p.Q441* 0.14 TCGA-EE-A2MR-06 22 29835198 29835198 G A RFPL1 Intron 0.08 TCGA-EE-A2MR-06 22 30163512 30163512 C T UQCR10 Missense_Mutation p.A42V 0.16 tolerated(0.09) benign(0.128) TCGA-EE-A2MR-06 22 30202864 30202864 G A ASCC2 Missense_Mutation p.S313F 0.11 deleterious(0.01) benign(0.361) TCGA-EE-A2MR-06 22 30412626 30412626 C T MTMR3 Missense_Mutation p.S538L 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 22 30416356 30416356 C T MTMR3 Missense_Mutation p.S903F 0.10 deleterious_low_confidence(0.04) benign(0.235) TCGA-EE-A2MR-06 22 30684753 30684753 G A GATSL3 Silent p.F42F 0.13 TCGA-EE-A2MR-06 22 31042955 31042955 C T SLC35E4 Silent p.F330F 0.09 TCGA-EE-A2MR-06 22 31301954 31301954 G A OSBP2 Missense_Mutation p.E836K 0.29 deleterious(0.01) possibly_damaging(0.641) TCGA-EE-A2MR-06 22 31600586 31600586 C T RNF185 3'UTR 0.09 TCGA-EE-A2MR-06 22 31737630 31737630 G A PATZ1 Intron 0.11 TCGA-EE-A2MR-06 22 31741063 31741063 G A PATZ1 Missense_Mutation p.R176C 0.08 deleterious_low_confidence(0) benign(0.067) TCGA-EE-A2MR-06 22 31952984 31952984 C T SFI1 Missense_Mutation p.R201C 0.21 deleterious(0.01) probably_damaging(0.923) TCGA-EE-A2MR-06 22 31985558 31985558 C T SFI1 Silent p.F513F 0.09 TCGA-EE-A2MR-06 22 32302551 32302551 C T DEPDC5 3'UTR 0.11 TCGA-EE-A2MR-06 22 32302578 32302578 C T DEPDC5 3'UTR 0.12 TCGA-EE-A2MR-06 22 32754262 32754262 G A RFPL3 Silent p.Q68Q 0.22 TCGA-EE-A2MR-06 22 32841979 32841979 C T BPIFC Missense_Mutation p.D127N 0.19 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MR-06 22 32889265 32889265 C T FBXO7 Nonsense_Mutation p.R381* 0.09 TCGA-EE-A2MR-06 22 32914272 32914272 G A SYN3 Silent p.P456P 0.07 TCGA-EE-A2MR-06 22 33402392 33402392 G A SYN3 Missense_Mutation p.P86S 0.14 tolerated(0.54) unknown(0) TCGA-EE-A2MR-06 22 35812735 35812735 C T MCM5 Silent p.F506F 0.11 TCGA-EE-A2MR-06 22 35812752 35812752 C T MCM5 Missense_Mutation p.S512L 0.09 deleterious(0) possibly_damaging(0.891) TCGA-EE-A2MR-06 22 35947785 35947785 C T RASD2 Silent p.F169F 0.21 TCGA-EE-A2MR-06 22 35947882 35947882 C T RASD2 Missense_Mutation p.R202C 0.11 deleterious(0.03) benign(0.273) TCGA-EE-A2MR-06 22 36205895 36205895 A C RBFOX2 Missense_Mutation p.Y132D 0.22 probably_damaging(0.96) TCGA-EE-A2MR-06 22 36661521 36661521 G A APOL1 Silent p.E229E 0.10 TCGA-EE-A2MR-06 22 36661995 36661995 G A APOL1 Silent p.L387L 0.14 TCGA-EE-A2MR-06 22 36678649 36678649 G A MYH9 3'UTR 0.14 TCGA-EE-A2MR-06 22 37268428 37268428 G A NCF4 Silent p.V196V 0.19 TCGA-EE-A2MR-06 22 37407153 37407153 G A TST Missense_Mutation p.A270V 0.19 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A2MR-06 22 37464711 37464711 C T TMPRSS6 Intron 0.13 TCGA-EE-A2MR-06 22 37524243 37524243 G A IL2RB Missense_Mutation p.P517S 0.16 tolerated(0.19) benign(0.131) TCGA-EE-A2MR-06 22 37538546 37538546 C T IL2RB Nonsense_Mutation p.W70* 0.10 TCGA-EE-A2MR-06 22 37603572 37603572 C T SSTR3 Missense_Mutation p.E91K 0.18 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A2MR-06 22 38051920 38051920 C T SH3BP1 3'UTR 0.56 TCGA-EE-A2MR-06 22 38119320 38119320 C T TRIOBP Nonsense_Mutation p.R253* 0.14 TCGA-EE-A2MR-06 22 38119837 38119837 G A TRIOBP Missense_Mutation p.R425Q 0.13 tolerated_low_confidence(0.23) benign(0) TCGA-EE-A2MR-06 22 38120329 38120329 C T TRIOBP Missense_Mutation p.S589F 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-EE-A2MR-06 22 38121592 38121592 C T TRIOBP Missense_Mutation p.S1010F 0.07 tolerated_low_confidence(0.06) benign(0.017) TCGA-EE-A2MR-06 22 38121671 38121671 C T TRIOBP Silent p.D1036D 0.13 TCGA-EE-A2MR-06 22 38211243 38211243 C T GCAT Silent p.F255F 0.12 TCGA-EE-A2MR-06 22 38823255 38823255 C T KCNJ4 Missense_Mutation p.E295K 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 22 38948707 38948707 G A DMC1 Missense_Mutation p.R129C 0.12 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MR-06 22 39111957 39111957 A T GTPBP1 Missense_Mutation p.Y117F 0.14 tolerated(0.16) benign(0.002) TCGA-EE-A2MR-06 22 39112741 39112741 C T GTPBP1 Silent p.G190G 0.26 TCGA-EE-A2MR-06 22 39262713 39262713 G A CBX6 Missense_Mutation p.P247L 0.08 tolerated(0.17) benign(0.004) TCGA-EE-A2MR-06 22 39355623 39355623 G A APOBEC3A Missense_Mutation p.E36K 0.14 tolerated(0.33) benign(0.011) TCGA-EE-A2MR-06 22 39427845 39427845 C T APOBEC3D Silent p.F303F 0.10 TCGA-EE-A2MR-06 22 40059777 40059777 C T CACNA1I Silent p.V1176V 0.07 TCGA-EE-A2MR-06 22 40069012 40069012 G A CACNA1I Missense_Mutation p.E1570K 0.16 deleterious(0.03) possibly_damaging(0.621) TCGA-EE-A2MR-06 22 40140285 40140285 G A ENTHD1 Missense_Mutation p.S408L 0.18 deleterious(0) benign(0.035) TCGA-EE-A2MR-06 22 40417787 40417787 G A FAM83F Missense_Mutation p.G425R 0.23 tolerated_low_confidence(0.12) possibly_damaging(0.489) TCGA-EE-A2MR-06 22 40574093 40574093 C T TNRC6B 5'UTR 0.08 TCGA-EE-A2MR-06 22 41257367 41257367 C T DNAJB7 Missense_Mutation p.R211K 0.08 deleterious(0.03) benign(0.036) TCGA-EE-A2MR-06 22 41745271 41745271 C T ZC3H7B Silent p.I638I 0.17 TCGA-EE-A2MR-06 22 41864692 41864692 G A PHF5A 5'UTR 0.14 TCGA-EE-A2MR-06 22 41895768 41895768 C T ACO2 Silent p.V25V 0.09 TCGA-EE-A2MR-06 22 42032201 42032201 A G XRCC6 Missense_Mutation p.K94E 0.14 tolerated(0.05) benign(0.241) TCGA-EE-A2MR-06 22 42263103 42263103 C T SREBF2 Silent p.T119T 0.16 TCGA-EE-A2MR-06 22 42609803 42609803 G A TCF20 Silent p.G503G 0.11 TCGA-EE-A2MR-06 22 42782999 42782999 G A NFAM1 Missense_Mutation p.S250F 0.09 deleterious(0.02) probably_damaging(0.976) TCGA-EE-A2MR-06 22 43950826 43950826 T A EFCAB6 Missense_Mutation p.M1191L 0.06 tolerated(0.37) benign(0.012) TCGA-EE-A2MR-06 22 44064824 44064824 A G EFCAB6 Missense_Mutation p.L581P 0.20 tolerated(0.22) benign(0.001) TCGA-EE-A2MR-06 22 44234785 44234785 G A SULT4A1 Missense_Mutation p.T157I 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2MR-06 22 44282250 44282250 C T PNPLA5 Nonsense_Mutation p.W294* 0.13 TCGA-EE-A2MR-06 22 44681565 44681565 A T KIAA1644 Silent p.V114V 0.08 TCGA-EE-A2MR-06 22 44681590 44681590 C T KIAA1644 Missense_Mutation p.G106E 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 22 45681903 45681903 C T UPK3A Missense_Mutation p.P45L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 22 45785615 45785615 A G SMC1B Missense_Mutation p.F570L 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MR-06 22 45795121 45795121 C T SMC1B Missense_Mutation p.E323K 0.11 tolerated(0.27) possibly_damaging(0.815) TCGA-EE-A2MR-06 22 45813729 45813729 C T RIBC2 Silent p.F148F 0.17 TCGA-EE-A2MR-06 22 45938082 45938082 C T FBLN1 Missense_Mutation p.R372C 0.19 tolerated(0.17) probably_damaging(0.965) TCGA-EE-A2MR-06 22 46654184 46654184 C T PKDREJ Missense_Mutation p.R1679Q 0.11 tolerated(0.87) benign(0.004) TCGA-EE-A2MR-06 22 46792579 46792579 G T CELSR1 Nonsense_Mutation p.C1922* 0.27 TCGA-EE-A2MR-06 22 46931916 46931916 G A CELSR1 Silent p.I384I 0.21 TCGA-EE-A2MR-06 22 47193361 47193361 C T TBC1D22A Missense_Mutation p.P161S 0.12 tolerated(0.38) benign(0.009) TCGA-EE-A2MR-06 22 50523257 50523257 G A MLC1 Silent p.P25P 0.15 TCGA-EE-A2MR-06 22 50558962 50558962 C T MOV10L1 Missense_Mutation p.P496S 0.13 deleterious(0.03) benign(0.356) TCGA-EE-A2MR-06 22 50596549 50596549 C T MOV10L1 Silent p.L1044L 0.23 TCGA-EE-A2MR-06 22 50659030 50659030 C T TUBGCP6 Missense_Mutation p.G1253E 0.09 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MR-06 22 50719043 50719043 G A PLXNB2 Silent p.F1350F 0.11 TCGA-EE-A2MR-06 22 50728538 50728538 G A PLXNB2 Missense_Mutation p.S159F 0.15 tolerated(0.05) possibly_damaging(0.748) TCGA-EE-A2MR-06 22 50755728 50755728 G A DENND6B Silent p.F149F 0.26 TCGA-EE-A2MR-06 22 50845250 50845250 C T PPP6R2 Silent p.L120L 0.07 TCGA-EE-A2MR-06 22 50876645 50876645 C T PPP6R2 Nonsense_Mutation p.Q602* 0.15 TCGA-EE-A2MR-06 22 50987925 50987925 G A KLHDC7B Missense_Mutation p.E444K 0.15 deleterious(0.03) probably_damaging(0.931) TCGA-EE-A2MR-06 22 51040272 51040272 C T MAPK8IP2 Silent p.I40I 0.10 TCGA-EE-A2MR-06 22 51178159 51178159 G A ACR Missense_Mutation p.E107K 0.12 tolerated(0.05) benign(0.42) TCGA-EE-A2MR-06 2 100210236 100210236 G A AFF3 Silent p.P654P 0.14 TCGA-EE-A2MR-06 2 100210314 100210314 G A AFF3 Silent p.H628H 0.32 TCGA-EE-A2MR-06 2 10059173 10059173 C T TAF1B Silent p.Y425Y 0.14 TCGA-EE-A2MR-06 2 100919445 100919445 C T LONRF2 Missense_Mutation p.E287K 0.17 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 2 102626190 102626190 C T IL1R2 Silent p.V78V 0.23 TCGA-EE-A2MR-06 2 102644754 102644754 G A IL1R2 Missense_Mutation p.G366E 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MR-06 2 102959576 102959576 G A IL1RL1 Missense_Mutation p.G255R 0.08 tolerated(0.63) benign(0.05) TCGA-EE-A2MR-06 2 103006655 103006655 G A IL18R1 Silent p.T363T 0.16 TCGA-EE-A2MR-06 2 103011069 103011069 G A IL18R1 Missense_Mutation p.D418N 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 2 103067337 103067337 T C IL18RAP Missense_Mutation p.Y414H 0.08 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 2 103090277 103090277 C T SLC9A4 Missense_Mutation p.A20V 0.26 tolerated(0.31) benign(0.001) TCGA-EE-A2MR-06 2 103299894 103299894 C T SLC9A2 Silent p.F393F 0.44 TCGA-EE-A2MR-06 2 103343331 103343331 G A MFSD9 Silent p.L134L 0.12 TCGA-EE-A2MR-06 2 103431343 103431343 C T TMEM182 Silent p.F202F 0.38 TCGA-EE-A2MR-06 2 107423316 107423316 C T ST6GAL2 Missense_Mutation p.E470K 0.15 probably_damaging(1) TCGA-EE-A2MR-06 2 107459988 107459988 C T ST6GAL2 Missense_Mutation p.G149E 0.07 benign(0.007) TCGA-EE-A2MR-06 2 108475843 108475843 C T RGPD4 Silent p.L489L 0.11 TCGA-EE-A2MR-06 2 108487731 108487731 G A RGPD4 Missense_Mutation p.E1091K 0.07 tolerated(0.65) possibly_damaging(0.512) TCGA-EE-A2MR-06 2 10862956 10862956 G A ATP6V1C2 5'UTR 0.15 TCGA-EE-A2MR-06 2 108994898 108994898 G A SULT1C4 Nonsense_Mutation p.W35* 0.14 TCGA-EE-A2MR-06 2 109104200 109104200 C T GCC2 Nonsense_Mutation p.R1326* 0.14 TCGA-EE-A2MR-06 2 10929932 10929932 G A PDIA6 Silent p.I261I 0.12 TCGA-EE-A2MR-06 2 109347931 109347931 G A RANBP2 Splice_Site p.X135_splice 0.12 TCGA-EE-A2MR-06 2 111556645 111556645 G A ACOXL Missense_Mutation p.G172E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 111691128 111691128 C T ACOXL Missense_Mutation p.S323L 0.09 tolerated(0.28) benign(0.004) TCGA-EE-A2MR-06 2 112702606 112702606 C T MERTK Silent p.I184I 0.15 TCGA-EE-A2MR-06 2 112751959 112751959 G A MERTK Silent p.V476V 0.09 TCGA-EE-A2MR-06 2 112786120 112786120 G A MERTK Silent p.L893L 0.11 TCGA-EE-A2MR-06 2 113089541 113089541 T G ZC3H6 Missense_Mutation p.S1016A 0.12 tolerated(0.39) benign(0.002) TCGA-EE-A2MR-06 2 113326337 113326337 C T POLR1B Silent p.V644V 0.09 TCGA-EE-A2MR-06 2 113532692 113532692 C T IL1A Silent p.G256G 0.12 TCGA-EE-A2MR-06 2 113588001 113588001 G A IL1B Silent p.F249F 0.12 TCGA-EE-A2MR-06 2 113742473 113742473 C T IL36G Silent p.F119F 0.16 TCGA-EE-A2MR-06 2 113763579 113763579 G A IL36A Silent p.G13G 0.08 TCGA-EE-A2MR-06 2 113832816 113832816 C T IL1F10 Missense_Mutation p.L112F 0.09 tolerated(1) probably_damaging(1) TCGA-EE-A2MR-06 2 113887169 113887169 C T IL1RN Nonsense_Mutation p.Q48* 0.12 TCGA-EE-A2MR-06 2 113940670 113940670 G A PSD4 Missense_Mutation p.E213K 0.11 deleterious_low_confidence(0.01) benign(0.231) TCGA-EE-A2MR-06 2 114257127 114257127 C T FOXD4L1 Silent p.A98A 0.09 TCGA-EE-A2MR-06 2 114257370 114257370 C T FOXD4L1 Silent p.T179T 0.07 TCGA-EE-A2MR-06 2 11738872 11738872 T C GREB1 Missense_Mutation p.L740P 0.12 deleterious(0) possibly_damaging(0.867) TCGA-EE-A2MR-06 2 11742594 11742594 C T GREB1 Silent p.T864T 0.10 TCGA-EE-A2MR-06 2 11773064 11773064 C T GREB1 Silent p.L1622L 0.15 TCGA-EE-A2MR-06 2 11911634 11911634 C T LPIN1 Missense_Mutation p.P191L 0.12 tolerated(0.07) benign(0.003) TCGA-EE-A2MR-06 2 11924018 11924018 C T LPIN1 Missense_Mutation p.P492L 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MR-06 2 119751998 119751998 C T MARCO Missense_Mutation p.R489W 0.08 deleterious(0.01) unknown(0) TCGA-EE-A2MR-06 2 119752101 119752101 G A MARCO 3'UTR 0.08 TCGA-EE-A2MR-06 2 119915315 119915315 G A C1QL2 Silent p.F177F 0.27 TCGA-EE-A2MR-06 2 120005733 120005733 C T STEAP3 Missense_Mutation p.P334L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 120194767 120194767 C T TMEM37 Silent p.F108F 0.09 TCGA-EE-A2MR-06 2 120383175 120383175 G A PCDP1 Missense_Mutation p.R476Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 2 120438787 120438787 C T TMEM177 Missense_Mutation p.H120Y 0.12 deleterious(0.03) benign(0.259) TCGA-EE-A2MR-06 2 120690101 120690101 G A PTPN4 Missense_Mutation p.R391Q 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MR-06 2 120848025 120848025 C T EPB41L5 Nonsense_Mutation p.R326* 0.12 TCGA-EE-A2MR-06 2 121685033 121685033 G A GLI2 Missense_Mutation p.G82D 0.13 deleterious(0.02) benign(0.322) TCGA-EE-A2MR-06 2 121732522 121732522 C T GLI2 Missense_Mutation p.S402L 0.16 deleterious(0.01) benign(0.001) TCGA-EE-A2MR-06 2 122176207 122176207 G A CLASP1 Missense_Mutation p.P771S 0.13 tolerated(0.94) benign(0.001) TCGA-EE-A2MR-06 2 127961123 127961123 C T CYP27C1 Translation_Start_Site p.M1? 0.17 tolerated(0.43) probably_damaging(0.996) TCGA-EE-A2MR-06 2 128028988 128028988 G A ERCC3 Silent p.L623L 0.10 TCGA-EE-A2MR-06 2 128327391 128327391 G A MYO7B Silent p.E166E 0.12 TCGA-EE-A2MR-06 2 128520663 128520663 G A WDR33 Missense_Mutation p.R233C 0.11 deleterious(0) unknown(0) TCGA-EE-A2MR-06 2 128753985 128753985 G A SAP130 Missense_Mutation p.P458S 0.15 tolerated_low_confidence(0.06) probably_damaging(0.987) TCGA-EE-A2MR-06 2 130910937 130910937 G A SMPD4 Silent p.I699I 0.21 TCGA-EE-A2MR-06 2 131520713 131520713 G A AMER3 Silent p.R356R 0.12 TCGA-EE-A2MR-06 2 132021797 132021797 C T POTEE Silent p.F923F 0.08 TCGA-EE-A2MR-06 2 132021832 132021832 C T POTEE Missense_Mutation p.S935F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.579) TCGA-EE-A2MR-06 2 132288234 132288234 G A CCDC74A Silent p.E126E 0.16 TCGA-EE-A2MR-06 2 133402786 133402786 G A GPR39 Missense_Mutation p.M323I 0.10 tolerated(1) benign(0.014) TCGA-EE-A2MR-06 2 133531428 133531428 C T NCKAP5 Missense_Mutation p.D1697N 0.11 tolerated(0.09) possibly_damaging(0.643) TCGA-EE-A2MR-06 2 133542183 133542183 C T NCKAP5 Missense_Mutation p.R734K 0.12 tolerated(0.16) possibly_damaging(0.868) TCGA-EE-A2MR-06 2 135712019 135712019 C T CCNT2 Missense_Mutation p.P665L 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-EE-A2MR-06 2 136566156 136566156 C T LCT Missense_Mutation p.R1254Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 2 136575245 136575245 G A LCT Missense_Mutation p.S458F 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MR-06 2 137814058 137814058 C T THSD7B Missense_Mutation p.H70Y 0.17 deleterious(0) benign(0.291) TCGA-EE-A2MR-06 2 137814328 137814328 G A THSD7B Missense_Mutation p.E160K 0.18 deleterious(0.02) benign(0.33) TCGA-EE-A2MR-06 2 138208483 138208483 G A THSD7B Missense_Mutation p.G1010R 0.16 deleterious(0) unknown(0) TCGA-EE-A2MR-06 2 139428830 139428830 G A NXPH2 Silent p.L153L 0.22 TCGA-EE-A2MR-06 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.19 TCGA-EE-A2MR-06 2 142004878 142004878 C T LRP1B Missense_Mutation p.R170K 0.29 benign(0) TCGA-EE-A2MR-06 2 1437313 1437313 G A TPO Missense_Mutation p.E95K 0.14 deleterious(0.01) possibly_damaging(0.52) TCGA-EE-A2MR-06 2 143790850 143790850 C T KYNU Missense_Mutation p.P334L 0.15 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MR-06 2 145156463 145156463 G A ZEB2 Missense_Mutation p.S764F 0.11 tolerated(0.05) benign(0.023) TCGA-EE-A2MR-06 2 149240855 149240855 C T MBD5 Missense_Mutation p.H899Y 0.12 tolerated(0.32) benign(0.291) TCGA-EE-A2MR-06 2 149246955 149246955 G A MBD5 Missense_Mutation p.V1019M 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MR-06 2 152466492 152466492 C T NEB Nonsense_Mutation p.W4054* 0.13 TCGA-EE-A2MR-06 2 152484282 152484282 C T NEB Missense_Mutation p.D3300N 0.18 probably_damaging(1) TCGA-EE-A2MR-06 2 152507129 152507129 C T NEB Missense_Mutation p.D2396N 0.16 benign(0.054) TCGA-EE-A2MR-06 2 152739783 152739783 G A CACNB4 Silent p.I83I 0.12 TCGA-EE-A2MR-06 2 153591589 153591589 C A ARL6IP6 Missense_Mutation p.S179Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 2 158272366 158272366 C T CYTIP Silent p.R301R 0.12 TCGA-EE-A2MR-06 2 158443912 158443912 G A ACVR1C Missense_Mutation p.L31F 0.14 tolerated(0.35) possibly_damaging(0.602) TCGA-EE-A2MR-06 2 159481683 159481683 C T PKP4 Silent p.P299P 0.20 TCGA-EE-A2MR-06 2 160074104 160074104 C T TANC1 Missense_Mutation p.P1114L 0.11 tolerated(0.26) benign(0.012) TCGA-EE-A2MR-06 2 160873150 160873150 G A PLA2R1 Missense_Mutation p.S509F 0.12 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A2MR-06 2 160884741 160884741 G A PLA2R1 Missense_Mutation p.H363Y 0.10 tolerated(0.62) benign(0.01) TCGA-EE-A2MR-06 2 162273212 162273212 C T TBR1 Silent p.F97F 0.08 TCGA-EE-A2MR-06 2 162273265 162273265 C T TBR1 Missense_Mutation p.S115F 0.09 deleterious(0) benign(0.261) TCGA-EE-A2MR-06 2 162279982 162279982 C T TBR1 Silent p.F431F 0.24 TCGA-EE-A2MR-06 2 162711484 162711484 T G SLC4A10 Missense_Mutation p.L141V 0.27 tolerated(0.42) benign(0.229) TCGA-EE-A2MR-06 2 164466911 164466911 G A FIGN Silent p.I477I 0.14 TCGA-EE-A2MR-06 2 1653263 1653263 G A PXDN Silent p.F763F 0.10 TCGA-EE-A2MR-06 2 165560956 165560956 G A COBLL1 Missense_Mutation p.P408L 0.16 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MR-06 2 165561600 165561600 C T COBLL1 Missense_Mutation p.G338R 0.11 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A2MR-06 2 166179688 166179688 C T SCN2A Missense_Mutation p.S565F 0.12 tolerated(0.14) probably_damaging(0.974) TCGA-EE-A2MR-06 2 166187934 166187934 G A SCN2A Silent p.V748V 0.14 TCGA-EE-A2MR-06 2 166201356 166201356 G A SCN2A Missense_Mutation p.E952K 0.15 deleterious(0) benign(0.073) TCGA-EE-A2MR-06 2 167133742 167133742 G A SCN9A Silent p.I864I 0.10 TCGA-EE-A2MR-06 2 168100147 168100147 G A XIRP2 Missense_Mutation p.G749S 0.12 probably_damaging(1) TCGA-EE-A2MR-06 2 168105143 168105143 G A XIRP2 Missense_Mutation p.G2414E 0.17 benign(0.258) TCGA-EE-A2MR-06 2 169780258 169780258 G A ABCB11 Silent p.I1280I 0.09 TCGA-EE-A2MR-06 2 169791884 169791884 C T ABCB11 Missense_Mutation p.E956K 0.20 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2MR-06 2 170068490 170068490 C T LRP2 Missense_Mutation p.V2090M 0.21 benign(0.175) TCGA-EE-A2MR-06 2 170068592 170068592 G A LRP2 Missense_Mutation p.R2056W 0.14 possibly_damaging(0.841) TCGA-EE-A2MR-06 2 170145543 170145543 G A LRP2 Silent p.T345T 0.15 TCGA-EE-A2MR-06 2 170591668 170591668 C A KLHL23 Missense_Mutation p.F48L 0.10 tolerated(0.23) benign(0.04) TCGA-EE-A2MR-06 2 171240260 171240260 C T MYO3B Missense_Mutation p.P409L 0.18 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MR-06 2 171355153 171355153 G A MYO3B Silent p.E1022E 0.10 TCGA-EE-A2MR-06 2 171822505 171822505 C T GORASP2 Silent p.S408S 0.14 TCGA-EE-A2MR-06 2 172926305 172926305 C T METAP1D Silent p.F40F 0.09 TCGA-EE-A2MR-06 2 174231977 174231977 T G CDCA7 Missense_Mutation p.Y429D 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 2 174820667 174820667 A G SP3 Silent p.S191S 0.16 TCGA-EE-A2MR-06 2 178415796 178415796 G A TTC30B Nonsense_Mutation p.R566* 0.10 TCGA-EE-A2MR-06 2 178482475 178482475 G A TTC30A Missense_Mutation p.P319S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 179170945 179170945 C T OSBPL6 Missense_Mutation p.H12Y 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.513) TCGA-EE-A2MR-06 2 179325096 179325096 C T DFNB59 Missense_Mutation p.S230L 0.09 tolerated(0.14) benign(0.018) TCGA-EE-A2MR-06 2 179542435 179542435 C T TTN Missense_Mutation p.E11402K 0.17 TCGA-EE-A2MR-06 2 179568878 179568878 G A TTN Silent p.I10073I 0.11 TCGA-EE-A2MR-06 2 179568945 179568945 C T TTN Missense_Mutation p.R10051Q 0.17 TCGA-EE-A2MR-06 2 179586616 179586616 C T TTN Missense_Mutation p.D7592N 0.12 TCGA-EE-A2MR-06 2 179634510 179634510 C T TTN Missense_Mutation p.G2933E 0.18 TCGA-EE-A2MR-06 2 179664453 179664453 A G TTN Silent p.I225I 0.17 TCGA-EE-A2MR-06 2 179665314 179665314 G A TTN Missense_Mutation p.P131S 0.10 TCGA-EE-A2MR-06 2 179665315 179665315 G A TTN Silent p.I130I 0.10 TCGA-EE-A2MR-06 2 179730620 179730620 C T CCDC141 Silent p.K866K 0.14 TCGA-EE-A2MR-06 2 180818940 180818940 G A CWC22 Missense_Mutation p.P561S 0.23 tolerated(0.38) benign(0.241) TCGA-EE-A2MR-06 2 18113311 18113311 G A KCNS3 Missense_Mutation p.E346K 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 182403981 182403981 G A CERKL Missense_Mutation p.P485L 0.23 deleterious(0) possibly_damaging(0.585) TCGA-EE-A2MR-06 2 182543313 182543313 G T NEUROD1 Missense_Mutation p.T92N 0.15 deleterious(0.01) possibly_damaging(0.772) TCGA-EE-A2MR-06 2 182543371 182543371 C T NEUROD1 Missense_Mutation p.E73K 0.06 tolerated(0.27) benign(0.052) TCGA-EE-A2MR-06 2 183387049 183387049 G A PDE1A Missense_Mutation p.L19F 0.12 tolerated_low_confidence(0.05) benign(0.154) TCGA-EE-A2MR-06 2 185800682 185800682 C T ZNF804A Missense_Mutation p.P187S 0.38 tolerated(0.23) benign(0.002) TCGA-EE-A2MR-06 2 185800783 185800783 G A ZNF804A Silent p.K220K 0.18 TCGA-EE-A2MR-06 2 185802482 185802482 C T ZNF804A Nonsense_Mutation p.R787* 0.20 TCGA-EE-A2MR-06 2 18736791 18736791 A G RDH14 Missense_Mutation p.L226P 0.08 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 2 187531446 187531446 C T ITGAV Missense_Mutation p.R728C 0.13 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MR-06 2 189868765 189868765 C T COL3A1 Missense_Mutation p.P907S 0.20 unknown(0) TCGA-EE-A2MR-06 2 189870087 189870087 G A COL3A1 Silent p.G981G 0.10 TCGA-EE-A2MR-06 2 190428764 190428764 G A SLC40A1 Silent p.F316F 0.13 TCGA-EE-A2MR-06 2 191903929 191903929 G A STAT4 Missense_Mutation p.S477F 0.14 deleterious(0) possibly_damaging(0.726) TCGA-EE-A2MR-06 2 1921025 1921025 G A MYT1L Missense_Mutation p.H522Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 2 192700975 192700975 G A SDPR Silent p.L318L 0.16 TCGA-EE-A2MR-06 2 196746715 196746715 C T DNAH7 Missense_Mutation p.G1922E 0.17 deleterious(0.03) possibly_damaging(0.847) TCGA-EE-A2MR-06 2 197004445 197004445 G A STK17B Silent p.L245L 0.18 TCGA-EE-A2MR-06 2 197183807 197183807 G A HECW2 Nonsense_Mutation p.Q603* 0.11 TCGA-EE-A2MR-06 2 197664273 197664273 G A GTF3C3 Silent p.F21F 0.08 TCGA-EE-A2MR-06 2 201460056 201460056 G A AOX1 Missense_Mutation p.M55I 0.28 deleterious(0) benign(0.12) TCGA-EE-A2MR-06 2 202000976 202000976 C T CFLAR Intron 0.11 TCGA-EE-A2MR-06 2 202001014 202001014 C T CFLAR Intron 0.09 TCGA-EE-A2MR-06 2 203591054 203591054 C T FAM117B Missense_Mutation p.H310Y 0.09 deleterious(0.02) possibly_damaging(0.889) TCGA-EE-A2MR-06 2 203621973 203621973 C T FAM117B Missense_Mutation p.P381L 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A2MR-06 2 203825973 203825973 C T CARF Missense_Mutation p.S219L 0.06 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A2MR-06 2 203977874 203977874 C T NBEAL1 Missense_Mutation p.S751F 0.06 deleterious(0.04) possibly_damaging(0.866) TCGA-EE-A2MR-06 2 204073420 204073420 G A NBEAL1 Missense_Mutation p.E2494K 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 2 204131234 204131234 C T CYP20A1 Intron 0.10 TCGA-EE-A2MR-06 2 207175457 207175457 A G ZDBF2 Missense_Mutation p.I2069V 0.10 tolerated(0.34) benign(0) TCGA-EE-A2MR-06 2 208631716 208631716 G A FZD5 Missense_Mutation p.S583L 0.10 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-EE-A2MR-06 2 20870883 20870883 C T GDF7 Missense_Mutation p.R351C 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2MR-06 2 20870930 20870930 G A GDF7 Nonsense_Mutation p.W366* 0.22 TCGA-EE-A2MR-06 2 208773295 208773295 G A PLEKHM3 Silent p.F631F 0.18 TCGA-EE-A2MR-06 2 208841835 208841835 G A PLEKHM3 Silent p.I362I 0.08 TCGA-EE-A2MR-06 2 211163214 211163214 G A MYL1 Silent p.V78V 0.19 TCGA-EE-A2MR-06 2 21225563 21225563 G A APOB Missense_Mutation p.S4244F 0.29 benign(0.015) TCGA-EE-A2MR-06 2 21225977 21225977 C T APOB Missense_Mutation p.R4106K 0.30 possibly_damaging(0.82) TCGA-EE-A2MR-06 2 212288919 212288919 G A ERBB4 Missense_Mutation p.P943S 0.18 deleterious(0) possibly_damaging(0.709) TCGA-EE-A2MR-06 2 21230373 21230373 G A APOB Silent p.L3123L 0.05 TCGA-EE-A2MR-06 2 21232290 21232290 G A APOB Silent p.L2484L 0.28 TCGA-EE-A2MR-06 2 21234519 21234519 C T APOB Missense_Mutation p.D1741N 0.06 probably_damaging(0.996) TCGA-EE-A2MR-06 2 21238062 21238062 G A APOB Silent p.F1193F 0.29 TCGA-EE-A2MR-06 2 21239331 21239331 G A APOB Silent p.V1104V 0.06 TCGA-EE-A2MR-06 2 212615400 212615400 G A ERBB4 Missense_Mutation p.R196C 0.11 tolerated(0.17) probably_damaging(0.971) TCGA-EE-A2MR-06 2 213921659 213921659 C T IKZF2 Missense_Mutation p.E102K 0.50 tolerated(0.45) possibly_damaging(0.512) TCGA-EE-A2MR-06 2 215278924 215278924 C T VWC2L Missense_Mutation p.L3F 0.23 tolerated_low_confidence(0.23) benign(0.002) TCGA-EE-A2MR-06 2 215840562 215840562 C T ABCA12 Silent p.E1776E 0.28 TCGA-EE-A2MR-06 2 215851370 215851370 C T ABCA12 Silent p.K1353K 0.16 TCGA-EE-A2MR-06 2 216903991 216903991 C T PECR 3'UTR 0.09 TCGA-EE-A2MR-06 2 218682840 218682840 G A TNS1 Silent p.G1301G 0.09 TCGA-EE-A2MR-06 2 218924939 218924939 C T CXCR2P1 RNA 0.22 TCGA-EE-A2MR-06 2 218940231 218940231 G A RUFY4 Nonsense_Mutation p.W359* 0.14 TCGA-EE-A2MR-06 2 218947958 218947958 G A RUFY4 Missense_Mutation p.R514K 0.08 tolerated(0.23) benign(0.008) TCGA-EE-A2MR-06 2 218999542 218999542 G A CXCR2 Missense_Mutation p.M6I 0.09 tolerated(0.41) benign(0.001) TCGA-EE-A2MR-06 2 219000440 219000440 C T CXCR2 Missense_Mutation p.H306Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 2 219029427 219029427 G A CXCR1 Missense_Mutation p.P170S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 219137561 219137561 G A PNKD Intron 0.22 TCGA-EE-A2MR-06 2 219292725 219292725 G A VIL1 Missense_Mutation p.V129M 0.09 deleterious(0.01) benign(0.401) TCGA-EE-A2MR-06 2 219292964 219292964 G A VIL1 Nonsense_Mutation p.W157* 0.08 TCGA-EE-A2MR-06 2 219559031 219559031 C T STK36 Missense_Mutation p.S794L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 2 219603031 219603031 C T TTLL4 Missense_Mutation p.S211F 0.13 deleterious(0) possibly_damaging(0.823) TCGA-EE-A2MR-06 2 219604796 219604796 C T TTLL4 Silent p.L501L 0.12 TCGA-EE-A2MR-06 2 219677348 219677348 C T CYP27A1 Silent p.F240F 0.21 TCGA-EE-A2MR-06 2 219757816 219757816 C T WNT10A Silent p.G359G 0.26 TCGA-EE-A2MR-06 2 219757817 219757817 C T WNT10A Missense_Mutation p.R360C 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 2 219887962 219887962 G A CCDC108 Silent p.P929P 0.17 TCGA-EE-A2MR-06 2 219894839 219894839 G A CCDC108 Missense_Mutation p.P418L 0.23 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A2MR-06 2 219894840 219894840 G A CCDC108 Missense_Mutation p.P418S 0.23 tolerated(0.22) probably_damaging(0.982) TCGA-EE-A2MR-06 2 220026918 220026918 G A SLC23A3 Missense_Mutation p.L524F 0.09 tolerated(0.42) possibly_damaging(0.729) TCGA-EE-A2MR-06 2 220037337 220037337 G A CNPPD1 Missense_Mutation p.R402C 0.12 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-EE-A2MR-06 2 220097283 220097283 C T ANKZF1 Missense_Mutation p.R146W 0.14 deleterious(0.01) benign(0.024) TCGA-EE-A2MR-06 2 220097337 220097337 C T ANKZF1 Nonsense_Mutation p.R164* 0.09 TCGA-EE-A2MR-06 2 220115714 220115714 G A TUBA4A Missense_Mutation p.S236F 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-EE-A2MR-06 2 220172257 220172257 C T PTPRN Silent p.Q63Q 0.22 TCGA-EE-A2MR-06 2 220309382 220309382 G A SPEG Silent p.E132E 0.13 TCGA-EE-A2MR-06 2 220333927 220333927 G A SPEG Missense_Mutation p.E1181K 0.15 benign(0.297) TCGA-EE-A2MR-06 2 220350093 220350093 C T SPEG Silent p.L2545L 0.13 TCGA-EE-A2MR-06 2 220353934 220353934 G A SPEG Missense_Mutation p.G2770S 0.08 benign(0.029) TCGA-EE-A2MR-06 2 220353935 220353935 G A SPEG Missense_Mutation p.G2770D 0.08 possibly_damaging(0.448) TCGA-EE-A2MR-06 2 220356962 220356962 G A SPEG Silent p.K3197K 0.18 TCGA-EE-A2MR-06 2 220404091 220404091 G A CHPF 3'UTR 0.14 TCGA-EE-A2MR-06 2 220420865 220420865 G A OBSL1 Silent p.L1496L 0.26 TCGA-EE-A2MR-06 2 222290663 222290663 G A EPHA4 3'UTR 0.29 TCGA-EE-A2MR-06 2 222347282 222347282 C T EPHA4 Missense_Mutation p.G370R 0.20 tolerated(0.46) benign(0.103) TCGA-EE-A2MR-06 2 223086039 223086039 T C PAX3 Missense_Mutation p.N287S 0.14 tolerated(0.08) benign(0.015) TCGA-EE-A2MR-06 2 223158390 223158390 G A PAX3 Intron 0.12 TCGA-EE-A2MR-06 2 223339386 223339386 C T SGPP2 Missense_Mutation p.P107S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 223436541 223436541 G A FARSB 3'UTR 0.30 TCGA-EE-A2MR-06 2 224462877 224462877 G A SCG2 Missense_Mutation p.P375L 0.21 tolerated(0.25) possibly_damaging(0.829) TCGA-EE-A2MR-06 2 224866465 224866465 G A SERPINE2 Silent p.I63I 0.11 TCGA-EE-A2MR-06 2 225378273 225378273 G A CUL3 Missense_Mutation p.P208S 0.26 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MR-06 2 226446965 226446965 G A NYAP2 Missense_Mutation p.D278N 0.08 tolerated(0.06) possibly_damaging(0.771) TCGA-EE-A2MR-06 2 227886836 227886836 G A COL4A4 Missense_Mutation p.P1382S 0.16 unknown(0) TCGA-EE-A2MR-06 2 227920702 227920702 G A COL4A4 Missense_Mutation p.P892L 0.17 unknown(0) TCGA-EE-A2MR-06 2 227924334 227924334 G A COL4A4 Missense_Mutation p.R724C 0.21 probably_damaging(0.965) TCGA-EE-A2MR-06 2 227963492 227963492 G A COL4A4 Silent p.F374F 0.11 TCGA-EE-A2MR-06 2 228172560 228172560 G A COL4A3 Missense_Mutation p.G1463R 0.18 unknown(0) TCGA-EE-A2MR-06 2 228419176 228419176 C T AGFG1 Missense_Mutation p.P574S 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A2MR-06 2 228476242 228476242 G A C2orf83 Silent p.A107A 0.20 TCGA-EE-A2MR-06 2 228762942 228762942 G A DAW1 Nonsense_Mutation p.W162* 0.09 TCGA-EE-A2MR-06 2 230272017 230272017 A C DNER Missense_Mutation p.C552G 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 230312225 230312225 C T DNER Silent p.V431V 0.36 TCGA-EE-A2MR-06 2 231036812 231036812 C T SP110 Silent p.L595L 0.09 TCGA-EE-A2MR-06 2 231157414 231157414 G A SP140 Missense_Mutation p.E627K 0.17 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MR-06 2 231177477 231177477 G A SP140 3'UTR 0.20 TCGA-EE-A2MR-06 2 231738192 231738192 C T ITM2C Silent p.L61L 0.20 TCGA-EE-A2MR-06 2 231742781 231742781 C T ITM2C Silent p.F257F 0.23 TCGA-EE-A2MR-06 2 231775087 231775087 C T GPR55 Missense_Mutation p.M197I 0.08 tolerated(0.39) benign(0.03) TCGA-EE-A2MR-06 2 232577545 232577545 C T PTMA Missense_Mutation p.T107I 0.30 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A2MR-06 2 232577546 232577546 C T PTMA Silent p.T107T 0.33 TCGA-EE-A2MR-06 2 233246386 233246386 G A ALPP Missense_Mutation p.D497N 0.14 tolerated(0.58) benign(0) TCGA-EE-A2MR-06 2 233272346 233272346 G A ALPPL2 Missense_Mutation p.A115T 0.15 deleterious(0.01) possibly_damaging(0.694) TCGA-EE-A2MR-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.20 TCGA-EE-A2MR-06 2 233345515 233345515 C T ECEL1 Silent p.Q688Q 0.24 TCGA-EE-A2MR-06 2 233349775 233349775 C T ECEL1 Missense_Mutation p.M294I 0.16 tolerated(0.05) benign(0.056) TCGA-EE-A2MR-06 2 233899291 233899291 G A NEU2 Missense_Mutation p.E223K 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A2MR-06 2 234072438 234072438 C T INPP5D Silent p.I430I 0.25 TCGA-EE-A2MR-06 2 234431968 234431968 G A USP40 Silent p.I694I 0.18 TCGA-EE-A2MR-06 2 234545533 234545533 C T UGT1A10 Missense_Mutation p.S122L 0.09 tolerated(0.14) benign(0.156) TCGA-EE-A2MR-06 2 234545607 234545607 C T UGT1A10 Silent p.L147L 0.14 TCGA-EE-A2MR-06 2 234627835 234627835 C T UGT1A4 Silent p.A123A 0.12 TCGA-EE-A2MR-06 2 234774931 234774931 G A MSL3P1 RNA 0.13 TCGA-EE-A2MR-06 2 234847758 234847758 C T TRPM8 Silent p.F155F 0.19 TCGA-EE-A2MR-06 2 234854510 234854510 T C TRPM8 Missense_Mutation p.L237S 0.16 tolerated(0.18) benign(0.001) TCGA-EE-A2MR-06 2 234854546 234854546 C T TRPM8 Missense_Mutation p.P249L 0.09 tolerated(0.09) benign(0.018) TCGA-EE-A2MR-06 2 234879000 234879000 C T TRPM8 Missense_Mutation p.S762L 0.19 tolerated(0.14) benign(0.001) TCGA-EE-A2MR-06 2 234905099 234905099 G A TRPM8 Missense_Mutation p.M1023I 0.14 deleterious(0.04) benign(0.005) TCGA-EE-A2MR-06 2 237308122 237308122 C T IQCA1 Missense_Mutation p.E382K 0.21 tolerated(0.2) benign(0.097) TCGA-EE-A2MR-06 2 238245121 238245121 C T COL6A3 Silent p.T2874T 0.10 TCGA-EE-A2MR-06 2 238277299 238277299 G A COL6A3 Missense_Mutation p.P1603S 0.14 benign(0.401) TCGA-EE-A2MR-06 2 238285469 238285469 G A COL6A3 Missense_Mutation p.H1006Y 0.09 possibly_damaging(0.745) TCGA-EE-A2MR-06 2 238285572 238285572 G A COL6A3 Silent p.F971F 0.15 TCGA-EE-A2MR-06 2 238287632 238287632 G A COL6A3 Missense_Mutation p.S715L 0.15 benign(0.127) TCGA-EE-A2MR-06 2 238475779 238475779 C T PRLH Silent p.F75F 0.09 TCGA-EE-A2MR-06 2 239036292 239036292 C T ESPNL Missense_Mutation p.H378Y 0.23 tolerated(0.33) benign(0.001) TCGA-EE-A2MR-06 2 239161929 239161929 G A PER2 Missense_Mutation p.S912F 0.24 tolerated(0.7) possibly_damaging(0.736) TCGA-EE-A2MR-06 2 239169517 239169517 G A PER2 Silent p.T498T 0.13 TCGA-EE-A2MR-06 2 240981546 240981546 G A PRR21 Missense_Mutation p.S285F 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-EE-A2MR-06 2 240985384 240985384 G A OR6B3 Missense_Mutation p.L36F 0.09 deleterious(0.03) possibly_damaging(0.695) TCGA-EE-A2MR-06 2 241402767 241402767 C T GPC1 Missense_Mutation p.P241S 0.16 tolerated(0.6) benign(0.241) TCGA-EE-A2MR-06 2 241463769 241463769 G A ANKMY1 Silent p.I366I 0.11 TCGA-EE-A2MR-06 2 241496659 241496659 G A ANKMY1 5'UTR 0.11 TCGA-EE-A2MR-06 2 241516008 241516008 C T RNPEPL1 Silent p.L292L 0.18 TCGA-EE-A2MR-06 2 241659326 241659326 G A KIF1A Missense_Mutation p.S1629F 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2MR-06 2 241814562 241814562 C T AGXT Silent p.S239S 0.11 TCGA-EE-A2MR-06 2 241827960 241827960 T A C2orf54 Missense_Mutation p.T334S 0.13 tolerated(0.16) benign(0.034) TCGA-EE-A2MR-06 2 241835106 241835106 C T C2orf54 Silent p.E103E 0.15 TCGA-EE-A2MR-06 2 241976243 241976243 G A SNED1 Missense_Mutation p.G281D 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 241992590 241992590 G A SNED1 Missense_Mutation p.E702K 0.17 tolerated(0.69) benign(0.071) TCGA-EE-A2MR-06 2 242004955 242004955 G A SNED1 Missense_Mutation p.R985Q 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MR-06 2 242051690 242051690 G A PASK Silent p.I1173I 0.20 TCGA-EE-A2MR-06 2 242054387 242054387 G A PASK Intron 0.07 TCGA-EE-A2MR-06 2 242082329 242082329 G A PASK Missense_Mutation p.S40L 0.18 tolerated(0.05) benign(0.021) TCGA-EE-A2MR-06 2 24253872 24253872 G T C2orf44 Silent p.V699V 0.21 TCGA-EE-A2MR-06 2 242572423 242572423 G A THAP4 Silent p.S383S 0.11 TCGA-EE-A2MR-06 2 242689687 242689687 C T D2HGDH Silent p.L325L 0.11 TCGA-EE-A2MR-06 2 242757513 242757513 C T NEU4 Silent p.F211F 0.15 TCGA-EE-A2MR-06 2 242793446 242793446 C T PDCD1 Missense_Mutation p.E211K 0.16 deleterious(0.04) benign(0.388) TCGA-EE-A2MR-06 2 242814281 242814281 G A CXXC11 Missense_Mutation p.G192S 0.19 tolerated(1) benign(0.032) TCGA-EE-A2MR-06 2 25064518 25064518 G A ADCY3 Silent p.I325I 0.28 TCGA-EE-A2MR-06 2 25141245 25141245 G A ADCY3 Silent p.V204V 0.28 TCGA-EE-A2MR-06 2 26257559 26257559 C T RAB10 Missense_Mutation p.R28C 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 2 26689584 26689584 G A OTOF Missense_Mutation p.R1500W 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 26818096 26818096 G A CIB4 Silent p.F92F 0.09 TCGA-EE-A2MR-06 2 27001361 27001361 C T SLC35F6 Silent p.P366P 0.32 TCGA-EE-A2MR-06 2 27373228 27373228 C T TCF23 Missense_Mutation p.L154F 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MR-06 2 27455332 27455332 C T CAD Missense_Mutation p.R888C 0.41 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A2MR-06 2 27455482 27455482 C T CAD Missense_Mutation p.L938F 0.09 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MR-06 2 27461907 27461907 C T CAD Intron 0.16 TCGA-EE-A2MR-06 2 27481759 27481759 G A SLC30A3 Missense_Mutation p.P47S 0.31 tolerated(0.1) benign(0) TCGA-EE-A2MR-06 2 27730116 27730116 C T GCKR Missense_Mutation p.R361C 0.27 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 2 27730641 27730641 G A GCKR Missense_Mutation p.D413N 0.44 tolerated(0.11) possibly_damaging(0.894) TCGA-EE-A2MR-06 2 27804145 27804145 C T C2orf16 Missense_Mutation p.P1569L 0.31 tolerated(0.4) unknown(0) TCGA-EE-A2MR-06 2 27804610 27804610 G A C2orf16 Missense_Mutation p.R1724K 0.08 tolerated(0.27) benign(0.237) TCGA-EE-A2MR-06 2 28634950 28634950 C T FOSL2 Silent p.L206L 0.33 TCGA-EE-A2MR-06 2 28865889 28865889 G A PLB1 Missense_Mutation p.E1447K 0.24 tolerated_low_confidence(0.34) benign(0.004) TCGA-EE-A2MR-06 2 29237342 29237342 C T FAM179A Missense_Mutation p.P320L 0.24 tolerated(0.13) possibly_damaging(0.489) TCGA-EE-A2MR-06 2 29293628 29293628 G A C2orf71 Missense_Mutation p.S1167L 0.32 tolerated(0.18) probably_damaging(0.996) TCGA-EE-A2MR-06 2 29498074 29498074 G A ALK Silent p.I644I 0.27 TCGA-EE-A2MR-06 2 30457361 30457361 C T LBH Silent p.G39G 0.22 TCGA-EE-A2MR-06 2 31133758 31133758 C T GALNT14 3'UTR 0.25 TCGA-EE-A2MR-06 2 31570493 31570493 G A XDH Silent p.I1057I 0.27 TCGA-EE-A2MR-06 2 31573001 31573001 G A XDH Missense_Mutation p.P907L 0.24 deleterious(0) possibly_damaging(0.861) TCGA-EE-A2MR-06 2 31595143 31595143 C T XDH Missense_Mutation p.E603K 0.31 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 2 31598275 31598275 G A XDH Nonsense_Mutation p.Q525* 0.29 TCGA-EE-A2MR-06 2 31598300 31598300 G A XDH Silent p.F516F 0.27 TCGA-EE-A2MR-06 2 3197817 3197817 G A TSSC1 Silent p.T258T 0.12 TCGA-EE-A2MR-06 2 32724849 32724849 C T BIRC6 Missense_Mutation p.R2902C 0.25 probably_damaging(0.995) TCGA-EE-A2MR-06 2 32853391 32853391 G A TTC27 Missense_Mutation p.G11E 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MR-06 2 33007724 33007724 C T TTC27 Missense_Mutation p.S604F 0.32 deleterious(0) possibly_damaging(0.866) TCGA-EE-A2MR-06 2 33246129 33246129 C T LTBP1 Missense_Mutation p.S240F 0.23 deleterious(0.03) benign(0.352) TCGA-EE-A2MR-06 2 33484668 33484668 C T LTBP1 Silent p.P803P 0.26 TCGA-EE-A2MR-06 2 33498838 33498838 G A LTBP1 Silent p.R911R 0.16 TCGA-EE-A2MR-06 2 33614355 33614355 C T LTBP1 Missense_Mutation p.P1606S 0.28 tolerated(0.08) possibly_damaging(0.474) TCGA-EE-A2MR-06 2 3469395 3469395 C T TRAPPC12 Missense_Mutation p.H569Y 0.10 tolerated(0.1) possibly_damaging(0.53) TCGA-EE-A2MR-06 2 3597994 3597994 T C RNASEH1 Missense_Mutation p.I160V 0.10 tolerated(0.09) benign(0.313) TCGA-EE-A2MR-06 2 37002149 37002149 C T VIT Silent p.I247I 0.19 TCGA-EE-A2MR-06 2 3727484 3727484 G A ALLC Silent p.L66L 0.07 TCGA-EE-A2MR-06 2 38208423 38208423 C T RMDN2 Intron 0.26 TCGA-EE-A2MR-06 2 38208450 38208450 T A RMDN2 Missense_Mutation p.I430N 0.28 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MR-06 2 39033710 39033710 C T DHX57 Silent p.V1269V 0.32 TCGA-EE-A2MR-06 2 39081215 39081215 G A DHX57 Missense_Mutation p.H671Y 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 39085927 39085927 G A DHX57 Missense_Mutation p.P488L 0.14 tolerated(0.22) benign(0.045) TCGA-EE-A2MR-06 2 43520130 43520130 G A THADA Missense_Mutation p.P1554L 0.05 tolerated(0.47) benign(0.027) TCGA-EE-A2MR-06 2 43520131 43520131 G A THADA Missense_Mutation p.P1554S 0.06 tolerated(0.65) benign(0.002) TCGA-EE-A2MR-06 2 43953567 43953567 C T PLEKHH2 Silent p.L900L 0.31 TCGA-EE-A2MR-06 2 44050062 44050062 C T ABCG5 Missense_Mutation p.R446Q 0.09 deleterious(0) possibly_damaging(0.7) TCGA-EE-A2MR-06 2 44065740 44065740 C T ABCG5 Missense_Mutation p.G27R 0.06 tolerated(0.36) benign(0.07) TCGA-EE-A2MR-06 2 44073309 44073309 C T ABCG8 Nonsense_Mutation p.Q61* 0.36 TCGA-EE-A2MR-06 2 44079738 44079738 G A ABCG8 Missense_Mutation p.G232E 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 2 44079742 44079742 C T ABCG8 Silent p.I233I 0.06 TCGA-EE-A2MR-06 2 44079892 44079892 C T ABCG8 Silent p.V283V 0.07 TCGA-EE-A2MR-06 2 44152287 44152287 G A LRPPRC Silent p.L939L 0.06 TCGA-EE-A2MR-06 2 44436540 44436540 T G PPM1B Intron 0.08 TCGA-EE-A2MR-06 2 44502933 44502933 G A SLC3A1 Missense_Mutation p.E87K 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2MR-06 2 44513158 44513158 C T SLC3A1 Intron 0.33 TCGA-EE-A2MR-06 2 45233511 45233511 G A SIX2 Missense_Mutation p.S225L 0.11 tolerated(0.15) benign(0.035) TCGA-EE-A2MR-06 2 45235791 45235791 C T SIX2 Silent p.E153E 0.35 TCGA-EE-A2MR-06 2 46851359 46851359 C T CRIPT Missense_Mutation p.S100F 0.35 deleterious(0) probably_damaging(0.953) TCGA-EE-A2MR-06 2 46986993 46986993 C T SOCS5 Missense_Mutation p.H442Y 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A2MR-06 2 47600655 47600655 C T EPCAM Missense_Mutation p.R44C 0.32 deleterious(0) benign(0.005) TCGA-EE-A2MR-06 2 47690209 47690209 C T MSH2 Missense_Mutation p.P476S 0.09 tolerated(0.2) possibly_damaging(0.649) TCGA-EE-A2MR-06 2 48066818 48066818 G A FBXO11 Missense_Mutation p.P108L 0.25 tolerated_low_confidence(0.25) benign(0.006) TCGA-EE-A2MR-06 2 55408856 55408856 G A CLHC1 Missense_Mutation p.P344L 0.25 tolerated(0.36) benign(0.072) TCGA-EE-A2MR-06 2 60688944 60688944 G A BCL11A Missense_Mutation p.P368L 0.06 deleterious(0) possibly_damaging(0.82) TCGA-EE-A2MR-06 2 60773203 60773203 G A BCL11A Silent p.S96S 0.33 TCGA-EE-A2MR-06 2 61441559 61441559 G A USP34 Missense_Mutation p.S2773F 0.10 deleterious(0.01) possibly_damaging(0.45) TCGA-EE-A2MR-06 2 63720063 63720063 G A WDPCP Silent p.S29S 0.36 TCGA-EE-A2MR-06 2 63834042 63834042 C T MDH1 Missense_Mutation p.S327L 0.16 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A2MR-06 2 69040512 69040512 C T ARHGAP25 Silent p.F256F 0.10 TCGA-EE-A2MR-06 2 69049583 69049583 C T ARHGAP25 Missense_Mutation p.R438C 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 2 69093224 69093224 C T BMP10 Missense_Mutation p.E272K 0.18 tolerated(0.07) benign(0.271) TCGA-EE-A2MR-06 2 69409765 69409765 C T ANTXR1 Silent p.S442S 0.13 TCGA-EE-A2MR-06 2 70917972 70917972 C T ADD2 Missense_Mutation p.M265I 0.20 deleterious(0.02) possibly_damaging(0.447) TCGA-EE-A2MR-06 2 70923464 70923464 C T ADD2 Silent p.G129G 0.14 TCGA-EE-A2MR-06 2 70931508 70931508 C T ADD2 Silent p.Q89Q 0.22 TCGA-EE-A2MR-06 2 71653767 71653767 C T ZNF638 Missense_Mutation p.R1590C 0.12 tolerated(0.17) benign(0.004) TCGA-EE-A2MR-06 2 71797810 71797810 G A DYSF Missense_Mutation p.R1056Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 2 71892420 71892420 C T DYSF Missense_Mutation p.S1768F 0.20 tolerated(0.26) benign(0.008) TCGA-EE-A2MR-06 2 71894588 71894588 C T DYSF Silent p.V1800V 0.11 TCGA-EE-A2MR-06 2 73315605 73315605 G A RAB11FIP5 Missense_Mutation p.R381C 0.18 deleterious(0.04) possibly_damaging(0.708) TCGA-EE-A2MR-06 2 73519625 73519625 G A EGR4 Missense_Mutation p.P244S 0.34 tolerated(0.32) possibly_damaging(0.682) TCGA-EE-A2MR-06 2 73677856 73677856 T C ALMS1 Missense_Mutation p.L1400P 0.09 probably_damaging(0.983) TCGA-EE-A2MR-06 2 73678219 73678219 C T ALMS1 Missense_Mutation p.S1521F 0.23 benign(0.001) TCGA-EE-A2MR-06 2 73680069 73680069 C T ALMS1 Missense_Mutation p.P2138S 0.30 benign(0.202) TCGA-EE-A2MR-06 2 74435816 74435816 C T MTHFD2 Missense_Mutation p.P177L 0.32 tolerated(0.07) benign(0.17) TCGA-EE-A2MR-06 2 74474338 74474338 G A SLC4A5 Silent p.I628I 0.12 TCGA-EE-A2MR-06 2 74685016 74685016 C T INO80B 3'UTR 0.09 TCGA-EE-A2MR-06 2 74803645 74803645 G A M1AP Silent p.F290F 0.32 TCGA-EE-A2MR-06 2 74808960 74808960 C T M1AP Missense_Mutation p.G204R 0.20 deleterious(0.01) possibly_damaging(0.871) TCGA-EE-A2MR-06 2 75109255 75109255 C T HK2 Silent p.D576D 0.13 TCGA-EE-A2MR-06 2 75425991 75425991 G A TACR1 Nonsense_Mutation p.Q24* 0.32 TCGA-EE-A2MR-06 2 76975919 76975919 C T LRRTM4 Missense_Mutation p.E559K 0.10 tolerated_low_confidence(0.71) benign(0.022) TCGA-EE-A2MR-06 2 79363980 79363980 G A REG1P RNA 0.16 TCGA-EE-A2MR-06 2 84518338 84518338 G A FUNDC2P2 RNA 0.09 TCGA-EE-A2MR-06 2 85097370 85097370 C T TRABD2A Silent p.L216L 0.13 TCGA-EE-A2MR-06 2 85529619 85529619 C T TCF7L1 Missense_Mutation p.P180S 0.19 tolerated(0.11) probably_damaging(0.968) TCGA-EE-A2MR-06 2 85598230 85598230 C T ELMOD3 Nonsense_Mutation p.R128* 0.21 TCGA-EE-A2MR-06 2 86260899 86260899 A T POLR1A Missense_Mutation p.L1349H 0.16 tolerated(0.36) possibly_damaging(0.828) TCGA-EE-A2MR-06 2 88828842 88828842 C T TEX37 Silent p.D131D 0.19 TCGA-EE-A2MR-06 2 89266222 89266222 G A IGKV1-6 Silent p.L12L 0.12 TCGA-EE-A2MR-06 2 89416910 89416910 C T IGKV1-17 Missense_Mutation p.E92K 0.29 deleterious(0.01) benign(0.015) TCGA-EE-A2MR-06 2 89513023 89513023 C T IGKV1-27 Missense_Mutation p.G79E 0.15 deleterious(0.01) possibly_damaging(0.619) TCGA-EE-A2MR-06 2 9484673 9484673 C T ASAP2 Missense_Mutation p.R288C 0.08 deleterious(0.02) possibly_damaging(0.847) TCGA-EE-A2MR-06 2 9528648 9528648 C T ASAP2 Missense_Mutation p.P786S 0.15 tolerated(0.06) possibly_damaging(0.905) TCGA-EE-A2MR-06 2 9558820 9558820 G A ITGB1BP1 Missense_Mutation p.R3C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MR-06 2 95847020 95847020 C T ZNF2 Silent p.S149S 0.13 TCGA-EE-A2MR-06 2 95947716 95947716 C T PROM2 Missense_Mutation p.S532L 0.08 deleterious(0) possibly_damaging(0.501) TCGA-EE-A2MR-06 2 96690336 96690336 C T GPAT2 Missense_Mutation p.S503N 0.28 tolerated(0.92) benign(0.383) TCGA-EE-A2MR-06 2 96789835 96789835 G A ASTL Silent p.A350A 0.11 TCGA-EE-A2MR-06 2 96798394 96798394 C T ASTL Silent p.Q174Q 0.14 TCGA-EE-A2MR-06 2 96859049 96859049 G A STARD7 Silent p.I197I 0.10 TCGA-EE-A2MR-06 2 96950135 96950135 G A SNRNP200 Silent p.F1451F 0.21 TCGA-EE-A2MR-06 2 97464958 97464958 C T CNNM4 Silent p.L616L 0.09 TCGA-EE-A2MR-06 2 97475082 97475082 G A CNNM4 Missense_Mutation p.G719E 0.10 deleterious(0) possibly_damaging(0.889) TCGA-EE-A2MR-06 2 98375486 98375486 G A TMEM131 Missense_Mutation p.S1746L 0.10 deleterious_low_confidence(0.01) benign(0.143) TCGA-EE-A2MR-06 2 98846579 98846579 C T VWA3B Silent p.V739V 0.11 TCGA-EE-A2MR-06 2 98996762 98996762 G A CNGA3 Missense_Mutation p.E114K 0.11 tolerated(0.26) benign(0.009) TCGA-EE-A2MR-06 2 99413844 99413844 C T KIAA1211L Missense_Mutation p.G858E 0.08 tolerated(0.9) possibly_damaging(0.69) TCGA-EE-A2MR-06 3 10291130 10291130 C T TATDN2 Silent p.S82S 0.07 TCGA-EE-A2MR-06 3 10400425 10400425 C T ATP2B2 Missense_Mutation p.E696K 0.12 deleterious(0.04) benign(0.118) TCGA-EE-A2MR-06 3 10428192 10428192 C T ATP2B2 Silent p.V304V 0.15 TCGA-EE-A2MR-06 3 107096546 107096546 C T CCDC54 Missense_Mutation p.R38W 0.09 tolerated(0.07) benign(0.003) TCGA-EE-A2MR-06 3 108107858 108107858 C T MYH15 Missense_Mutation p.A1852T 0.14 tolerated(0.11) benign(0.153) TCGA-EE-A2MR-06 3 109046861 109046861 A G DPPA4 Silent p.L297L 0.07 TCGA-EE-A2MR-06 3 111564691 111564691 C T PLCXD2 3'UTR 0.12 TCGA-EE-A2MR-06 3 119348287 119348287 C T PLA1A Missense_Mutation p.S448F 0.14 tolerated(0.82) benign(0.005) TCGA-EE-A2MR-06 3 119911852 119911852 G A GPR156 Silent p.G136G 0.14 TCGA-EE-A2MR-06 3 120347241 120347241 C T HGD Missense_Mutation p.A442T 0.08 tolerated_low_confidence(0.22) benign(0.001) TCGA-EE-A2MR-06 3 121100150 121100150 A T STXBP5L Missense_Mutation p.E810D 0.17 tolerated(1) possibly_damaging(0.905) TCGA-EE-A2MR-06 3 121345646 121345646 G A FBXO40 Silent p.E673E 0.09 TCGA-EE-A2MR-06 3 121353213 121353213 C T HCLS1 Silent p.E248E 0.13 TCGA-EE-A2MR-06 3 121643849 121643849 C T SLC15A2 Missense_Mutation p.R365C 0.12 deleterious(0) possibly_damaging(0.773) TCGA-EE-A2MR-06 3 121659764 121659764 G T SLC15A2 Missense_Mutation p.K700N 0.14 tolerated(0.81) benign(0.001) TCGA-EE-A2MR-06 3 122003196 122003196 G A CASR Missense_Mutation p.E809K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 12208797 12208797 C T SYN2 RNA 0.08 TCGA-EE-A2MR-06 3 122274297 122274297 G A PARP9 Missense_Mutation p.H276Y 0.12 deleterious(0) benign(0.326) TCGA-EE-A2MR-06 3 123005614 123005614 C T ADCY5 Missense_Mutation p.R1192Q 0.20 deleterious(0) possibly_damaging(0.903) TCGA-EE-A2MR-06 3 123366088 123366088 G A MYLK Silent p.I1534I 0.12 TCGA-EE-A2MR-06 3 123419371 123419371 G A MYLK Missense_Mutation p.R982C 0.10 deleterious(0) benign(0.062) TCGA-EE-A2MR-06 3 123458800 123458800 C T MYLK Missense_Mutation p.G141E 0.12 tolerated(0.1) benign(0.044) TCGA-EE-A2MR-06 3 12434237 12434237 G A PPARG Missense_Mutation p.G202E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 125877477 125877477 C T ALDH1L1 Missense_Mutation p.E55K 0.18 tolerated_low_confidence(0.4) benign(0.005) TCGA-EE-A2MR-06 3 126227301 126227301 C T UROC1 Silent p.V123V 0.18 TCGA-EE-A2MR-06 3 126752875 126752875 C T PLXNA1 3'UTR 0.36 TCGA-EE-A2MR-06 3 126915875 126915875 G A C3orf56 Missense_Mutation p.G116E 0.16 deleterious(0.03) probably_damaging(0.969) TCGA-EE-A2MR-06 3 126915913 126915913 C T C3orf56 Missense_Mutation p.P129S 0.15 tolerated(0.14) possibly_damaging(0.803) TCGA-EE-A2MR-06 3 12784000 12784000 C T TMEM40 Missense_Mutation p.G103E 0.08 tolerated_low_confidence(1) benign(0.003) TCGA-EE-A2MR-06 3 127965823 127965823 G A EEFSEC Missense_Mutation p.G154E 0.08 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 3 128060436 128060436 G A EEFSEC Missense_Mutation p.D383N 0.14 tolerated(0.17) benign(0.097) TCGA-EE-A2MR-06 3 128181674 128181674 C T DNAJB8 Missense_Mutation p.G139R 0.23 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2MR-06 3 128757682 128757682 G A EFCC1 Silent p.S533S 0.10 TCGA-EE-A2MR-06 3 129120694 129120694 C T EFCAB12 Silent p.R487R 0.20 TCGA-EE-A2MR-06 3 129238473 129238473 C T IFT122 Silent p.R1229R 0.14 TCGA-EE-A2MR-06 3 129247649 129247649 G A RHO Missense_Mutation p.E25K 0.13 deleterious(0.04) possibly_damaging(0.522) TCGA-EE-A2MR-06 3 129288798 129288798 G A PLXND1 Silent p.I1251I 0.15 TCGA-EE-A2MR-06 3 129293293 129293293 G A PLXND1 Silent p.S857S 0.14 TCGA-EE-A2MR-06 3 129389742 129389742 G A TMCC1 Silent p.I314I 0.13 TCGA-EE-A2MR-06 3 12962040 12962040 G A IQSEC1 Missense_Mutation p.T651I 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 3 130283894 130283894 G A COL6A6 Missense_Mutation p.G240R 0.12 tolerated(0.14) possibly_damaging(0.862) TCGA-EE-A2MR-06 3 130424436 130424436 A C PIK3R4 Missense_Mutation p.N967K 0.10 tolerated(0.25) benign(0.075) TCGA-EE-A2MR-06 3 130714935 130714935 C T ATP2C1 Silent p.F736F 0.14 TCGA-EE-A2MR-06 3 132071590 132071590 G A ACPP Silent p.Q297Q 0.21 TCGA-EE-A2MR-06 3 133474262 133474262 C T TF Silent p.F186F 0.13 TCGA-EE-A2MR-06 3 133667387 133667387 G A SLCO2A1 Silent p.F366F 0.08 TCGA-EE-A2MR-06 3 137729219 137729219 G A CLDN18 Missense_Mutation p.R51K 0.12 tolerated(0.58) benign(0.011) TCGA-EE-A2MR-06 3 138003356 138003356 C T ARMC8 Silent p.I589I 0.07 TCGA-EE-A2MR-06 3 138213864 138213864 G A CEP70 Missense_Mutation p.S596L 0.09 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-EE-A2MR-06 3 13860804 13860804 C T WNT7A Silent p.K229K 0.11 TCGA-EE-A2MR-06 3 138739086 138739086 C T PRR23B Missense_Mutation p.E140K 0.12 tolerated(0.27) possibly_damaging(0.87) TCGA-EE-A2MR-06 3 140406788 140406788 G A TRIM42 Missense_Mutation p.E422K 0.24 tolerated(0.35) benign(0.121) TCGA-EE-A2MR-06 3 143186016 143186016 G A SLC9A9 Silent p.I444I 0.18 TCGA-EE-A2MR-06 3 14746042 14746042 C T C3orf20 Silent p.F359F 0.09 TCGA-EE-A2MR-06 3 14814329 14814329 C T C3orf20 Missense_Mutation p.L888F 0.10 tolerated_low_confidence(0.42) benign(0.006) TCGA-EE-A2MR-06 3 14939527 14939527 C T FGD5 Silent p.F997F 0.08 TCGA-EE-A2MR-06 3 150264562 150264562 C A EIF2A 5'UTR 0.09 TCGA-EE-A2MR-06 3 151155194 151155194 A C IGSF10 Missense_Mutation p.S2385R 0.10 tolerated(0.29) benign(0.21) TCGA-EE-A2MR-06 3 15265034 15265034 C T CAPN7 Silent p.L231L 0.08 TCGA-EE-A2MR-06 3 15492946 15492946 C T COLQ 3'UTR 0.10 TCGA-EE-A2MR-06 3 16250070 16250070 C T GALNT15 Silent p.P324P 0.08 TCGA-EE-A2MR-06 3 16358425 16358425 C T RFTN1 Silent p.G549G 0.09 TCGA-EE-A2MR-06 3 164907340 164907340 C T SLITRK3 Missense_Mutation p.D427N 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 3 167035285 167035285 C T ZBBX Missense_Mutation p.D362N 0.50 tolerated(0.15) possibly_damaging(0.527) TCGA-EE-A2MR-06 3 167218000 167218000 A T WDR49 Missense_Mutation p.F639Y 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MR-06 3 167293760 167293760 C T WDR49 Silent p.V144V 0.15 TCGA-EE-A2MR-06 3 169099128 169099128 G A MECOM Silent p.I98I 0.24 TCGA-EE-A2MR-06 3 169644652 169644652 C T SAMD7 Missense_Mutation p.S201F 0.12 tolerated(0.73) benign(0.003) TCGA-EE-A2MR-06 3 170078770 170078770 C T SKIL Silent p.S217S 0.09 TCGA-EE-A2MR-06 3 170198340 170198340 G A SLC7A14 Silent p.F577F 0.11 TCGA-EE-A2MR-06 3 17131301 17131301 C T PLCL2 Missense_Mutation p.S968L 0.20 tolerated(0.13) possibly_damaging(0.489) TCGA-EE-A2MR-06 3 172835108 172835108 C T SPATA16 Silent p.E138E 0.14 TCGA-EE-A2MR-06 3 17349598 17349598 C T TBC1D5 Missense_Mutation p.E342K 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 182870195 182870195 G A LAMP3 Nonsense_Mutation p.Q286* 0.08 TCGA-EE-A2MR-06 3 182913012 182913012 C T MCF2L2 Silent p.T972T 0.17 TCGA-EE-A2MR-06 3 183225903 183225903 G A KLHL6 Missense_Mutation p.P285S 0.26 tolerated(0.43) benign(0.003) TCGA-EE-A2MR-06 3 183225904 183225904 G C KLHL6 Missense_Mutation p.C284W 0.26 deleterious(0) possibly_damaging(0.777) TCGA-EE-A2MR-06 3 184039405 184039405 C T EIF4G1 Missense_Mutation p.L352F 0.08 tolerated(0.07) possibly_damaging(0.621) TCGA-EE-A2MR-06 3 184298341 184298341 C T EPHB3 Missense_Mutation p.S775L 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 3 185169095 185169095 G A MAP3K13 Missense_Mutation p.R397Q 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 185407293 185407293 G A IGF2BP2 Missense_Mutation p.S176F 0.08 tolerated(0.3) possibly_damaging(0.845) TCGA-EE-A2MR-06 3 186362666 186362666 C T FETUB Missense_Mutation p.S184F 0.13 deleterious(0.02) benign(0.151) TCGA-EE-A2MR-06 3 186953597 186953597 C T MASP1 Missense_Mutation p.G688R 0.13 deleterious(0) possibly_damaging(0.535) TCGA-EE-A2MR-06 3 187442854 187442854 G A BCL6 Missense_Mutation p.R618C 0.16 deleterious(0) probably_damaging(0.96) TCGA-EE-A2MR-06 3 189526224 189526224 C T TP63 Missense_Mutation p.P163L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 19295239 19295239 G A KCNH8 Missense_Mutation p.R57Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 3 193036848 193036848 G A ATP13A5 Silent p.F655F 0.10 TCGA-EE-A2MR-06 3 194118769 194118769 G A GP5 Silent p.I81I 0.08 TCGA-EE-A2MR-06 3 195501130 195501130 G A MUC4 Silent p.F4330F 0.16 TCGA-EE-A2MR-06 3 195516631 195516631 G A MUC4 Missense_Mutation p.S607F 0.07 unknown(0) TCGA-EE-A2MR-06 3 195517001 195517001 C T MUC4 Missense_Mutation p.E484K 0.12 unknown(0) TCGA-EE-A2MR-06 3 195975103 195975103 G A PCYT1A Silent p.F103F 0.09 TCGA-EE-A2MR-06 3 196612840 196612840 C T SENP5 Missense_Mutation p.A263V 0.12 tolerated(0.06) benign(0.388) TCGA-EE-A2MR-06 3 196612841 196612841 C T SENP5 Silent p.A263A 0.12 TCGA-EE-A2MR-06 3 196754651 196754651 G A MFI2 Silent p.A60A 0.29 TCGA-EE-A2MR-06 3 197009663 197009663 G A DLG1 Missense_Mutation p.R69C 0.08 deleterious(0.04) benign(0.371) TCGA-EE-A2MR-06 3 197409405 197409405 G A KIAA0226 Missense_Mutation p.R688C 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 3 197427937 197427937 C T KIAA0226 Missense_Mutation p.D270N 0.20 tolerated(0.38) benign(0.001) TCGA-EE-A2MR-06 3 197670688 197670688 G A IQCG Silent p.I81I 0.09 TCGA-EE-A2MR-06 3 20225193 20225193 G A SGOL1 Silent p.I82I 0.15 TCGA-EE-A2MR-06 3 2908473 2908473 C A CNTN4 Silent p.S164S 0.19 TCGA-EE-A2MR-06 3 2942450 2942450 G A CNTN4 Missense_Mutation p.G341E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 31725315 31725315 C T OSBPL10 Missense_Mutation p.E513K 0.10 tolerated(0.37) benign(0.009) TCGA-EE-A2MR-06 3 32996028 32996028 G A CCR4 3'UTR 0.33 TCGA-EE-A2MR-06 3 35833970 35833970 G A ARPP21 Missense_Mutation p.G711E 0.24 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 3 36779044 36779044 G A DCLK3 Silent p.V369V 0.10 TCGA-EE-A2MR-06 3 36779857 36779857 C T DCLK3 Silent p.G98G 0.11 TCGA-EE-A2MR-06 3 36871143 36871143 C T TRANK1 Silent p.A2863A 0.15 TCGA-EE-A2MR-06 3 36872569 36872569 C T TRANK1 Silent p.Q2791Q 0.12 TCGA-EE-A2MR-06 3 36898645 36898645 C T TRANK1 Silent p.K812K 0.10 TCGA-EE-A2MR-06 3 36898910 36898910 C T TRANK1 Missense_Mutation p.G724E 0.12 tolerated(1) benign(0.003) TCGA-EE-A2MR-06 3 37053562 37053562 C T MLH1 Missense_Mutation p.R217C 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 3 37061859 37061859 C T MLH1 Missense_Mutation p.H315Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 3 37081681 37081681 C - MLH1 Frame_Shift_Del p.R522Gfs*13 0.16 TCGA-EE-A2MR-06 3 37514927 37514927 G A ITGA9 Silent p.Q132Q 0.11 TCGA-EE-A2MR-06 3 37555367 37555367 C T ITGA9 Silent p.V337V 0.08 TCGA-EE-A2MR-06 3 38051693 38051693 G A PLCD1 Missense_Mutation p.H377Y 0.11 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MR-06 3 38355319 38355319 C T SLC22A14 Missense_Mutation p.P422L 0.08 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MR-06 3 38738878 38738878 C T SCN10A Missense_Mutation p.E1945K 0.08 tolerated_low_confidence(0.15) benign(0.004) TCGA-EE-A2MR-06 3 38738884 38738884 C T SCN10A Missense_Mutation p.E1943K 0.08 tolerated_low_confidence(0.15) benign(0.11) TCGA-EE-A2MR-06 3 38755509 38755509 G A SCN10A Silent p.A1248A 0.14 TCGA-EE-A2MR-06 3 38783842 38783842 C T SCN10A Missense_Mutation p.M682I 0.12 deleterious(0) possibly_damaging(0.77) TCGA-EE-A2MR-06 3 38798221 38798221 C T SCN10A Missense_Mutation p.E412K 0.09 tolerated(0.13) possibly_damaging(0.829) TCGA-EE-A2MR-06 3 38888565 38888565 G A SCN11A Nonsense_Mutation p.Q1666* 0.19 TCGA-EE-A2MR-06 3 38991857 38991857 C T SCN11A 5'UTR 0.11 TCGA-EE-A2MR-06 3 39162599 39162599 C T TTC21A Silent p.L346L 0.10 TCGA-EE-A2MR-06 3 39228484 39228484 C T XIRP1 Missense_Mutation p.R818Q 0.16 tolerated(0.39) benign(0.029) TCGA-EE-A2MR-06 3 39229746 39229746 G A XIRP1 Silent p.V397V 0.11 TCGA-EE-A2MR-06 3 39435916 39435916 C T SLC25A38 Missense_Mutation p.T214I 0.12 tolerated(0.17) benign(0.021) TCGA-EE-A2MR-06 3 41705177 41705177 G A ULK4 Missense_Mutation p.L998F 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 42244161 42244161 C T TRAK1 Missense_Mutation p.S554F 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 3 42448644 42448644 C T LYZL4 Missense_Mutation p.G34R 0.12 tolerated(0.18) probably_damaging(0.997) TCGA-EE-A2MR-06 3 42727348 42727348 G A KLHL40 Missense_Mutation p.D80N 0.14 tolerated(0.92) benign(0.021) TCGA-EE-A2MR-06 3 42729662 42729662 G A KLHL40 Missense_Mutation p.G394E 0.13 tolerated(0.41) benign(0.107) TCGA-EE-A2MR-06 3 42750540 42750540 C T CCDC13 Missense_Mutation p.E694K 0.08 deleterious(0.01) possibly_damaging(0.742) TCGA-EE-A2MR-06 3 440029 440029 G A CHL1 Missense_Mutation p.D1072N 0.20 tolerated(0.88) benign(0.001) TCGA-EE-A2MR-06 3 44408953 44408953 C T TCAIM Nonsense_Mutation p.R109* 0.17 TCGA-EE-A2MR-06 3 44541984 44541984 G A ZNF852 Silent p.F95F 0.14 TCGA-EE-A2MR-06 3 44636230 44636230 G A ZNF660 Missense_Mutation p.R182Q 0.11 deleterious(0.01) benign(0.039) TCGA-EE-A2MR-06 3 44955175 44955175 G A TGM4 Silent p.V671V 0.16 TCGA-EE-A2MR-06 3 45988292 45988292 G A CXCR6 Missense_Mutation p.G107S 0.12 tolerated(0.2) possibly_damaging(0.613) TCGA-EE-A2MR-06 3 46062607 46062607 G A XCR1 Missense_Mutation p.S278F 0.13 deleterious(0.04) possibly_damaging(0.679) TCGA-EE-A2MR-06 3 46399702 46399702 C T CCR2 Silent p.T228T 0.11 TCGA-EE-A2MR-06 3 46415432 46415432 G A CCR5 Missense_Mutation p.E347K 0.13 deleterious(0.03) benign(0.196) TCGA-EE-A2MR-06 3 46485071 46485071 C T LTF Missense_Mutation p.E506K 0.07 tolerated(0.48) benign(0.012) TCGA-EE-A2MR-06 3 46747307 46747307 C T TMIE Missense_Mutation p.P41S 0.10 deleterious(0.02) benign(0.299) TCGA-EE-A2MR-06 3 46786217 46786217 C T PRSS45 Missense_Mutation p.S10N 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 3 46937283 46937283 G A PTH1R Silent p.R79R 0.10 TCGA-EE-A2MR-06 3 47043209 47043209 C T NBEAL2 Missense_Mutation p.R1559C 0.14 tolerated(0.34) benign(0.001) TCGA-EE-A2MR-06 3 47050061 47050061 C T NBEAL2 Silent p.L2644L 0.09 TCGA-EE-A2MR-06 3 47050062 47050062 T C NBEAL2 Missense_Mutation p.L2644P 0.09 tolerated(0.23) benign(0.105) TCGA-EE-A2MR-06 3 4741596 4741596 C T ITPR1 Missense_Mutation p.P1488S 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 3 47950854 47950854 G A MAP4 Intron 0.15 TCGA-EE-A2MR-06 3 48414338 48414338 G A FBXW12 Silent p.Q27Q 0.14 TCGA-EE-A2MR-06 3 48507820 48507820 C T TREX1 5'UTR 0.24 TCGA-EE-A2MR-06 3 48563046 48563046 G A PFKFB4 Silent p.F348F 0.10 TCGA-EE-A2MR-06 3 48573793 48573793 G A PFKFB4 Missense_Mutation p.H246Y 0.07 probably_damaging(1) TCGA-EE-A2MR-06 3 48605530 48605530 C T COL7A1 Missense_Mutation p.G2623D 0.19 probably_damaging(1) TCGA-EE-A2MR-06 3 48605947 48605947 C T COL7A1 Silent p.G2593G 0.12 TCGA-EE-A2MR-06 3 48619044 48619044 G A COL7A1 Missense_Mutation p.P1582S 0.16 unknown(0) TCGA-EE-A2MR-06 3 48619947 48619947 C T COL7A1 Splice_Site p.X1522_splice 0.15 TCGA-EE-A2MR-06 3 48698361 48698361 G A CELSR3 Silent p.A569A 0.15 TCGA-EE-A2MR-06 3 49162535 49162535 G A LAMB2 Missense_Mutation p.P930S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 49169616 49169616 G A LAMB2 Missense_Mutation p.P131L 0.10 deleterious(0.01) benign(0.201) TCGA-EE-A2MR-06 3 49394988 49394988 G A GPX1 Missense_Mutation p.L149F 0.09 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 3 49568970 49568970 C T DAG1 Silent p.P342P 0.08 TCGA-EE-A2MR-06 3 49688996 49688996 C T BSN Silent p.Y669Y 0.09 TCGA-EE-A2MR-06 3 49692520 49692520 C T BSN Missense_Mutation p.A1844V 0.20 unknown(0) TCGA-EE-A2MR-06 3 49695396 49695396 C T BSN Missense_Mutation p.P2803S 0.09 unknown(0) TCGA-EE-A2MR-06 3 49749975 49749975 C T RNF123 Missense_Mutation p.R854C 0.10 deleterious(0.04) possibly_damaging(0.517) TCGA-EE-A2MR-06 3 49897117 49897117 G A CAMKV Silent p.A380A 0.09 TCGA-EE-A2MR-06 3 50222211 50222211 G A SEMA3F Missense_Mutation p.A474T 0.21 tolerated(0.07) possibly_damaging(0.902) TCGA-EE-A2MR-06 3 50295059 50295059 C T GNAI2 Silent p.F335F 0.08 TCGA-EE-A2MR-06 3 50421649 50421649 G A CACNA2D2 Silent p.I210I 0.06 TCGA-EE-A2MR-06 3 51263087 51263087 C T DOCK3 Silent p.I420I 0.20 TCGA-EE-A2MR-06 3 51264798 51264798 G A DOCK3 Missense_Mutation p.G488R 0.19 deleterious(0.05) probably_damaging(0.911) TCGA-EE-A2MR-06 3 52255442 52255442 C T TLR9 Missense_Mutation p.D1118N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 3 52390704 52390704 C T DNAH1 Silent p.I1256I 0.10 TCGA-EE-A2MR-06 3 52398945 52398945 C T DNAH1 Missense_Mutation p.P1810S 0.18 probably_damaging(0.998) TCGA-EE-A2MR-06 3 52475386 52475386 G A SEMA3G Missense_Mutation p.S236F 0.09 tolerated(0.12) benign(0.392) TCGA-EE-A2MR-06 3 52475646 52475646 C T SEMA3G Missense_Mutation p.R204Q 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 52511653 52511653 C T NISCH Silent p.L328L 0.10 TCGA-EE-A2MR-06 3 52523677 52523677 C T NISCH Missense_Mutation p.H1147Y 0.12 tolerated(0.06) possibly_damaging(0.775) TCGA-EE-A2MR-06 3 52552738 52552738 G A STAB1 Splice_Site p.X1630_splice 0.17 TCGA-EE-A2MR-06 3 52556155 52556155 G A STAB1 Missense_Mutation p.G2125D 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 52557706 52557706 G A STAB1 Nonsense_Mutation p.W2443* 0.10 TCGA-EE-A2MR-06 3 52876860 52876860 C T TMEM110-MUSTN1 Silent p.R245R 0.10 TCGA-EE-A2MR-06 3 52876861 52876861 C A TMEM110-MUSTN1 Missense_Mutation p.R245L 0.09 deleterious(0.04) possibly_damaging(0.726) TCGA-EE-A2MR-06 3 53757636 53757636 G A CACNA1D Silent p.G634G 0.18 TCGA-EE-A2MR-06 3 56330154 56330154 C T ERC2 Missense_Mutation p.E323K 0.08 deleterious(0.01) possibly_damaging(0.515) TCGA-EE-A2MR-06 3 56468508 56468508 T G ERC2 Silent p.G176G 0.12 TCGA-EE-A2MR-06 3 57132205 57132205 G A IL17RD Missense_Mutation p.S509F 0.18 deleterious(0.04) benign(0.031) TCGA-EE-A2MR-06 3 57494115 57494115 C T DNAH12 Missense_Mutation p.G232E 0.15 tolerated(0.08) benign(0.008) TCGA-EE-A2MR-06 3 58098016 58098016 C T FLNB Missense_Mutation p.H906Y 0.10 tolerated(1) benign(0.05) TCGA-EE-A2MR-06 3 58109069 58109069 G A FLNB Missense_Mutation p.D1126N 0.09 tolerated(0.47) benign(0.01) TCGA-EE-A2MR-06 3 58196622 58196622 C T DNASE1L3 Silent p.E4E 0.21 TCGA-EE-A2MR-06 3 58487097 58487097 C T KCTD6 Missense_Mutation p.S151F 0.18 deleterious(0.05) benign(0.06) TCGA-EE-A2MR-06 3 58519721 58519721 C T ACOX2 Missense_Mutation p.G159R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 3 63981841 63981841 C T ATXN7 Silent p.T781T 0.14 TCGA-EE-A2MR-06 3 64636703 64636703 C T ADAMTS9 Missense_Mutation p.E485K 0.06 deleterious(0) possibly_damaging(0.85) TCGA-EE-A2MR-06 3 69105771 69105771 C T UBA3 Missense_Mutation p.E359K 0.13 deleterious(0.05) benign(0.131) TCGA-EE-A2MR-06 3 69151146 69151146 C T ARL6IP5 Silent p.F111F 0.10 TCGA-EE-A2MR-06 3 71821909 71821909 G A PROK2 Missense_Mutation p.S119L 0.11 tolerated(0.46) possibly_damaging(0.593) TCGA-EE-A2MR-06 3 89259167 89259167 G A EPHA3 Missense_Mutation p.R104Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MR-06 3 93758803 93758803 T G ARL13B Missense_Mutation p.F257V 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MR-06 3 96706185 96706185 C T EPHA6 Silent p.I154I 0.13 TCGA-EE-A2MR-06 3 97806084 97806084 C T OR5AC2 Missense_Mutation p.P23L 0.12 deleterious(0.04) benign(0.049) TCGA-EE-A2MR-06 3 97887660 97887660 C T OR5H15 Silent p.I39I 0.11 TCGA-EE-A2MR-06 3 9799447 9799447 C T CAMK1 Silent p.A332A 0.09 TCGA-EE-A2MR-06 3 98001873 98001873 C T OR5H2 Missense_Mutation p.L48F 0.10 deleterious(0.03) benign(0.078) TCGA-EE-A2MR-06 3 98001937 98001937 G A OR5H2 Missense_Mutation p.G69E 0.08 deleterious(0.01) benign(0.078) TCGA-EE-A2MR-06 3 9959256 9959256 G C IL17RC Missense_Mutation p.R86T 0.09 tolerated_low_confidence(0.22) benign(0.001) TCGA-EE-A2MR-06 4 100208036 100208036 A G ADH1A Missense_Mutation p.V77A 0.20 deleterious(0.03) benign(0.126) TCGA-EE-A2MR-06 4 100266094 100266094 G A ADH1C Silent p.A164A 0.10 TCGA-EE-A2MR-06 4 100266210 100266210 C T ADH1C Missense_Mutation p.D126N 0.16 possibly_damaging(0.834) TCGA-EE-A2MR-06 4 100349074 100349074 G A ADH7 Silent p.F160F 0.20 TCGA-EE-A2MR-06 4 100434256 100434256 G A C4orf17 Silent p.P6P 0.45 TCGA-EE-A2MR-06 4 100470231 100470231 G A TRMT10A 3'UTR 0.23 TCGA-EE-A2MR-06 4 103189035 103189035 C T SLC39A8 Missense_Mutation p.E348K 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 4 103553193 103553193 G A MANBA 3'UTR 0.33 TCGA-EE-A2MR-06 4 106640287 106640287 C T GSTCD Missense_Mutation p.S166F 0.18 tolerated(0.22) benign(0.006) TCGA-EE-A2MR-06 4 107956591 107956591 C T DKK2 Missense_Mutation p.R53Q 0.19 tolerated(0.6) benign(0.086) TCGA-EE-A2MR-06 4 109895688 109895688 C T COL25A1 Splice_Site p.X155_splice 0.32 TCGA-EE-A2MR-06 4 110791708 110791708 C T LRIT3 Silent p.F601F 0.15 TCGA-EE-A2MR-06 4 110932392 110932392 C T EGF Silent p.P1135P 0.22 TCGA-EE-A2MR-06 4 113108144 113108144 G A C4orf32 3'UTR 0.09 TCGA-EE-A2MR-06 4 113510993 113510993 G A C4orf21 Missense_Mutation p.P1005L 0.14 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MR-06 4 113539774 113539774 G A C4orf21 Missense_Mutation p.S475L 0.10 tolerated(0.32) benign(0) TCGA-EE-A2MR-06 4 114214640 114214640 C T ANK2 Silent p.I807I 0.23 TCGA-EE-A2MR-06 4 114899620 114899620 G A ARSJ Missense_Mutation p.P124L 0.15 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A2MR-06 4 114899621 114899621 G A ARSJ Missense_Mutation p.P124S 0.15 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MR-06 4 115891597 115891597 C T NDST4 Missense_Mutation p.E404K 0.19 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 4 119035978 119035978 G A NDST3 Missense_Mutation p.E363K 0.17 tolerated(0.55) benign(0.002) TCGA-EE-A2MR-06 4 119810202 119810202 G A SYNPO2 Missense_Mutation p.G4E 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 120182982 120182982 C T USP53 Missense_Mutation p.S312F 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MR-06 4 121774621 121774621 G A PRDM5 Silent p.F84F 0.10 TCGA-EE-A2MR-06 4 122722619 122722619 C T EXOSC9 Silent p.L14L 0.21 TCGA-EE-A2MR-06 4 122853481 122853481 G A TRPC3 Missense_Mutation p.A311V 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 4 123107241 123107241 C T KIAA1109 Missense_Mutation p.H137Y 0.29 probably_damaging(0.985) TCGA-EE-A2MR-06 4 123159367 123159367 C T KIAA1109 Missense_Mutation p.S1232F 0.17 probably_damaging(0.926) TCGA-EE-A2MR-06 4 123271120 123271120 C T KIAA1109 Silent p.F4580F 0.17 TCGA-EE-A2MR-06 4 123302238 123302238 G A ADAD1 Missense_Mutation p.M88I 0.18 tolerated(0.18) benign(0.001) TCGA-EE-A2MR-06 4 123748449 123748449 C T FGF2 Silent p.F173F 0.15 TCGA-EE-A2MR-06 4 126238432 126238432 T C FAT4 Missense_Mutation p.L289P 0.14 probably_damaging(1) TCGA-EE-A2MR-06 4 126372516 126372516 G A FAT4 Missense_Mutation p.E3449K 0.19 benign(0.393) TCGA-EE-A2MR-06 4 128651718 128651718 G A SLC25A31 Silent p.A6A 0.15 TCGA-EE-A2MR-06 4 128814468 128814468 C T PLK4 Silent p.F739F 0.12 TCGA-EE-A2MR-06 4 134073098 134073098 C T PCDH10 Silent p.T601T 0.16 TCGA-EE-A2MR-06 4 1377640 1377640 G A UVSSA Missense_Mutation p.G650R 0.10 deleterious(0.04) benign(0.216) TCGA-EE-A2MR-06 4 140810649 140810649 C T MAML3 Silent p.Q647Q 0.10 TCGA-EE-A2MR-06 4 141331012 141331012 C T CLGN Missense_Mutation p.E86K 0.08 deleterious(0.02) benign(0.217) TCGA-EE-A2MR-06 4 144354782 144354782 C T GAB1 Missense_Mutation p.P169L 0.23 tolerated(0.29) benign(0.002) TCGA-EE-A2MR-06 4 146576365 146576365 C T MMAA Nonsense_Mutation p.Q346* 0.10 TCGA-EE-A2MR-06 4 146824107 146824107 A T ZNF827 Missense_Mutation p.S102T 0.13 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MR-06 4 148743939 148743939 C T ARHGAP10 Silent p.I72I 0.11 TCGA-EE-A2MR-06 4 15060078 15060078 C T CPEB2 Missense_Mutation p.S832L 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A2MR-06 4 151356784 151356784 G A LRBA Missense_Mutation p.S2344F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 4 151504380 151504380 G A MAB21L2 Missense_Mutation p.E67K 0.10 tolerated(0.85) benign(0.046) TCGA-EE-A2MR-06 4 151788957 151788957 G A LRBA Missense_Mutation p.P878S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 152592260 152592260 G A PET112 3'UTR 0.15 TCGA-EE-A2MR-06 4 152629191 152629191 G A PET112 Nonsense_Mutation p.R276* 0.23 TCGA-EE-A2MR-06 4 15444102 15444102 G A C1QTNF7 Silent p.G190G 0.14 TCGA-EE-A2MR-06 4 154478223 154478223 C T KIAA0922 Missense_Mutation p.L180F 0.21 tolerated(0.24) benign(0.073) TCGA-EE-A2MR-06 4 154624181 154624181 G A TLR2 Missense_Mutation p.G41E 0.12 tolerated(0.23) benign(0.01) TCGA-EE-A2MR-06 4 154709789 154709789 C T SFRP2 Missense_Mutation p.E67K 0.10 deleterious(0.01) possibly_damaging(0.732) TCGA-EE-A2MR-06 4 155219413 155219413 C T DCHS2 Missense_Mutation p.R1563Q 0.18 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A2MR-06 4 155460287 155460287 G A PLRG1 Missense_Mutation p.S374L 0.16 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MR-06 4 155505656 155505656 G A FGA Missense_Mutation p.H741Y 0.19 tolerated(0.87) benign(0.005) TCGA-EE-A2MR-06 4 155719082 155719082 C T RBM46 Nonsense_Mutation p.R91* 0.12 TCGA-EE-A2MR-06 4 156135568 156135568 G A NPY2R Silent p.K159K 0.18 TCGA-EE-A2MR-06 4 156135819 156135819 G A NPY2R Nonsense_Mutation p.W243* 0.08 TCGA-EE-A2MR-06 4 156643194 156643194 G A GUCY1A3 Missense_Mutation p.R574Q 0.17 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MR-06 4 156832720 156832720 C T TDO2 Silent p.I230I 0.14 TCGA-EE-A2MR-06 4 156835556 156835556 G A TDO2 Missense_Mutation p.E270K 0.22 tolerated(0.28) possibly_damaging(0.595) TCGA-EE-A2MR-06 4 15780091 15780091 C T CD38 Silent p.L18L 0.13 TCGA-EE-A2MR-06 4 15842143 15842143 C T CD38 Missense_Mutation p.S274F 0.14 tolerated(0.5) benign(0.011) TCGA-EE-A2MR-06 4 160274736 160274736 C T RAPGEF2 Missense_Mutation p.R1236C 0.19 tolerated_low_confidence(0.12) benign(0.016) TCGA-EE-A2MR-06 4 164247634 164247634 G A NPY1R Missense_Mutation p.L25F 0.24 tolerated(0.78) benign(0.001) TCGA-EE-A2MR-06 4 164247704 164247704 C T NPY1R Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2MR-06 4 165962195 165962195 G A TRIM60 Missense_Mutation p.R324Q 0.09 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 4 166232670 166232670 C T KLHL2 Missense_Mutation p.A435V 0.10 deleterious(0.01) benign(0.313) TCGA-EE-A2MR-06 4 166261450 166261450 C T MSMO1 Silent p.I203I 0.26 TCGA-EE-A2MR-06 4 169209337 169209337 C T DDX60 Missense_Mutation p.E391K 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A2MR-06 4 169825027 169825027 G A PALLD Silent p.G864G 0.15 TCGA-EE-A2MR-06 4 170345807 170345807 G A NEK1 Missense_Mutation p.S1040F 0.24 deleterious(0.01) benign(0.065) TCGA-EE-A2MR-06 4 170618496 170618496 C T CLCN3 Missense_Mutation p.P392S 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MR-06 4 170618790 170618790 C T CLCN3 Missense_Mutation p.R490C 0.12 tolerated(0.25) benign(0.431) TCGA-EE-A2MR-06 4 1746292 1746292 C T TACC3 Silent p.I757I 0.15 TCGA-EE-A2MR-06 4 175898126 175898126 G A ADAM29 Missense_Mutation p.G484R 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 4 17597146 17597146 T A LAP3 Missense_Mutation p.I326N 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A2MR-06 4 176594942 176594942 G A GPM6A Silent p.F92F 0.18 TCGA-EE-A2MR-06 4 183664516 183664516 C T TENM3 Silent p.F1191F 0.21 TCGA-EE-A2MR-06 4 183673091 183673091 C T TENM3 Silent p.V1256V 0.21 TCGA-EE-A2MR-06 4 183694641 183694641 C T TENM3 Missense_Mutation p.R1637C 0.20 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2MR-06 4 183694776 183694776 G A TENM3 Missense_Mutation p.D1682N 0.20 tolerated(0.28) possibly_damaging(0.655) TCGA-EE-A2MR-06 4 183713528 183713528 C T TENM3 Silent p.T1901T 0.09 TCGA-EE-A2MR-06 4 184241037 184241037 C T CLDN22 Missense_Mutation p.R112K 0.10 tolerated(1) benign(0.008) TCGA-EE-A2MR-06 4 185038969 185038969 C T ENPP6 Silent p.R206R 0.11 TCGA-EE-A2MR-06 4 187172417 187172417 C T KLKB1 Missense_Mutation p.S268F 0.08 tolerated(0.06) benign(0.003) TCGA-EE-A2MR-06 4 187531066 187531066 G A FAT1 Silent p.A3319A 0.15 TCGA-EE-A2MR-06 4 187540298 187540298 G A FAT1 Missense_Mutation p.T2481I 0.20 benign(0.008) TCGA-EE-A2MR-06 4 187541765 187541765 G A FAT1 Missense_Mutation p.S1992F 0.13 benign(0.098) TCGA-EE-A2MR-06 4 187542656 187542656 G A FAT1 Missense_Mutation p.S1695L 0.13 probably_damaging(0.999) TCGA-EE-A2MR-06 4 188924578 188924578 G A ZFP42 Missense_Mutation p.R206K 0.18 tolerated(0.2) benign(0.004) TCGA-EE-A2MR-06 4 1957749 1957749 C T WHSC1 Silent p.P905P 0.11 TCGA-EE-A2MR-06 4 1961227 1961227 C T WHSC1 Silent p.I1005I 0.17 TCGA-EE-A2MR-06 4 20493436 20493436 C T SLIT2 Silent p.A276A 0.13 TCGA-EE-A2MR-06 4 20544117 20544117 G A SLIT2 Missense_Mutation p.G715E 0.09 tolerated(0.09) probably_damaging(1) TCGA-EE-A2MR-06 4 20618814 20618814 G A SLIT2 Missense_Mutation p.G1377R 0.15 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 4 23814477 23814477 C T PPARGC1A Missense_Mutation p.E638K 0.15 deleterious(0.01) unknown(0) TCGA-EE-A2MR-06 4 23826108 23826108 G A PPARGC1A Missense_Mutation p.P261S 0.11 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A2MR-06 4 25005663 25005663 G A LGI2 Silent p.L350L 0.17 TCGA-EE-A2MR-06 4 25014024 25014024 C T LGI2 Missense_Mutation p.M251I 0.09 tolerated(0.25) benign(0.091) TCGA-EE-A2MR-06 4 25335045 25335045 C T ZCCHC4 Silent p.L190L 0.11 TCGA-EE-A2MR-06 4 25379079 25379079 C T ANAPC4 Silent p.S10S 0.11 TCGA-EE-A2MR-06 4 25667805 25667805 G A SLC34A2 Silent p.L145L 0.10 TCGA-EE-A2MR-06 4 25789932 25789932 C T SEL1L3 Missense_Mutation p.E711K 0.10 tolerated(0.46) benign(0.131) TCGA-EE-A2MR-06 4 3037241 3037241 C T GRK4 Silent p.F466F 0.09 TCGA-EE-A2MR-06 4 30724158 30724158 C T PCDH7 Missense_Mutation p.R372W 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2MR-06 4 3117819 3117819 C T HTT Silent p.L299L 0.08 TCGA-EE-A2MR-06 4 3318767 3318767 C T RGS12 Silent p.V290V 0.16 TCGA-EE-A2MR-06 4 37651040 37651040 T A RELL1 Missense_Mutation p.E57D 0.11 tolerated(0.15) possibly_damaging(0.505) TCGA-EE-A2MR-06 4 38119797 38119797 C T TBC1D1 Silent p.F982F 0.12 TCGA-EE-A2MR-06 4 38798235 38798235 G A TLR1 Missense_Mutation p.P740S 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 4 38798936 38798936 G A TLR1 Missense_Mutation p.S506L 0.12 deleterious(0.02) benign(0.436) TCGA-EE-A2MR-06 4 40337520 40337520 G A CHRNA9 Nonsense_Mutation p.W12* 0.12 TCGA-EE-A2MR-06 4 40351265 40351265 C T CHRNA9 Silent p.L244L 0.08 TCGA-EE-A2MR-06 4 40356210 40356210 G A CHRNA9 Silent p.T371T 0.09 TCGA-EE-A2MR-06 4 41262675 41262675 C T UCHL1 Silent p.F62F 0.11 TCGA-EE-A2MR-06 4 42065035 42065035 C T SLC30A9 Missense_Mutation p.S310L 0.10 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MR-06 4 42424830 42424830 C T ATP8A1 Missense_Mutation p.G1100E 0.16 tolerated(0.95) probably_damaging(0.997) TCGA-EE-A2MR-06 4 47427765 47427765 G A GABRB1 Silent p.T385T 0.08 TCGA-EE-A2MR-06 4 47589171 47589171 C T ATP10D Missense_Mutation p.P1297S 0.14 deleterious(0.03) possibly_damaging(0.831) TCGA-EE-A2MR-06 4 48069569 48069569 C T TXK 3'UTR 0.12 TCGA-EE-A2MR-06 4 48525002 48525002 G A FRYL Silent p.N2479N 0.14 TCGA-EE-A2MR-06 4 4864557 4864557 C A MSX1 Missense_Mutation p.A200D 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 4 48906544 48906544 C T OCIAD2 Missense_Mutation p.G8E 0.19 tolerated(0.5) benign(0.024) TCGA-EE-A2MR-06 4 55133465 55133465 G A PDGFRA Missense_Mutation p.G257S 0.08 tolerated(0.7) probably_damaging(0.933) TCGA-EE-A2MR-06 4 55956149 55956149 C T KDR Missense_Mutation p.D1056N 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 4 55984888 55984888 C T KDR Missense_Mutation p.D81N 0.12 tolerated(0.12) benign(0.251) TCGA-EE-A2MR-06 4 5633672 5633672 C T EVC2 Missense_Mutation p.E520K 0.10 deleterious(0.05) possibly_damaging(0.676) TCGA-EE-A2MR-06 4 57176859 57176859 C T KIAA1211 Missense_Mutation p.P105S 0.15 tolerated(0.22) probably_damaging(0.994) TCGA-EE-A2MR-06 4 5837732 5837732 C T CRMP1 Silent p.R511R 0.12 TCGA-EE-A2MR-06 4 5961201 5961201 G A C4orf50 Silent p.L718L 0.09 TCGA-EE-A2MR-06 4 5990116 5990116 C T C4orf50 Silent p.V461V 0.11 TCGA-EE-A2MR-06 4 6066665 6066665 G A JAKMIP1 Missense_Mutation p.S458F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MR-06 4 6107505 6107505 C T JAKMIP1 Missense_Mutation p.E107K 0.16 deleterious(0) benign(0.22) TCGA-EE-A2MR-06 4 62758607 62758607 C A LPHN3 Silent p.R504R 0.25 TCGA-EE-A2MR-06 4 6374389 6374389 C T PPP2R2C Silent p.V162V 0.15 TCGA-EE-A2MR-06 4 6863957 6863957 C T KIAA0232 Silent p.P616P 0.18 TCGA-EE-A2MR-06 4 69362374 69362374 G A TMPRSS11E Missense_Mutation p.G375E 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 4 69533878 69533878 C T UGT2B15 Missense_Mutation p.M251I 0.17 deleterious(0.04) benign(0.168) TCGA-EE-A2MR-06 4 69535661 69535661 G A UGT2B15 Nonsense_Mutation p.Q226* 0.16 TCGA-EE-A2MR-06 4 70346421 70346421 G A UGT2B4 Silent p.F506F 0.26 TCGA-EE-A2MR-06 4 70361447 70361447 C T UGT2B4 Missense_Mutation p.E45K 0.16 deleterious(0.04) benign(0.424) TCGA-EE-A2MR-06 4 70615450 70615450 T C SULT1B1 Missense_Mutation p.N122D 0.15 tolerated(0.08) benign(0.197) TCGA-EE-A2MR-06 4 71347351 71347351 C T MUC7 Missense_Mutation p.S297F 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MR-06 4 72222738 72222738 C T SLC4A4 Silent p.D188D 0.17 TCGA-EE-A2MR-06 4 74351735 74351735 G A AFM Missense_Mutation p.D143N 0.22 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MR-06 4 7435764 7435764 C T PSAPL1 Silent p.R281R 0.10 TCGA-EE-A2MR-06 4 76452307 76452307 G A THAP6 Silent p.R184R 0.18 TCGA-EE-A2MR-06 4 76452309 76452309 A G THAP6 Missense_Mutation p.K185R 0.18 tolerated(0.41) benign(0.035) TCGA-EE-A2MR-06 4 7668894 7668894 G A SORCS2 Missense_Mutation p.R372Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 76781888 76781888 C T PPEF2 Missense_Mutation p.D732N 0.20 tolerated_low_confidence(0.41) benign(0.001) TCGA-EE-A2MR-06 4 76809475 76809475 G A PPEF2 Missense_Mutation p.H142Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 77033746 77033746 G A ART3 3'UTR 0.25 TCGA-EE-A2MR-06 4 77677740 77677740 C T SHROOM3 Silent p.S1616S 0.20 TCGA-EE-A2MR-06 4 77817214 77817214 C T SOWAHB Missense_Mutation p.E597K 0.17 deleterious(0) benign(0.292) TCGA-EE-A2MR-06 4 79207685 79207685 C T FRAS1 Missense_Mutation p.S509F 0.08 benign(0.089) TCGA-EE-A2MR-06 4 79308779 79308779 C G FRAS1 Missense_Mutation p.S1300C 0.19 possibly_damaging(0.572) TCGA-EE-A2MR-06 4 79462079 79462079 C T FRAS1 Missense_Mutation p.P3947L 0.14 probably_damaging(0.996) TCGA-EE-A2MR-06 4 79856297 79856297 G A PAQR3 Missense_Mutation p.S109F 0.10 deleterious(0.03) benign(0.049) TCGA-EE-A2MR-06 4 80899225 80899225 G A ANTXR2 Missense_Mutation p.P428L 0.09 deleterious(0.02) possibly_damaging(0.579) TCGA-EE-A2MR-06 4 81123450 81123450 C T PRDM8 Silent p.S278S 0.19 TCGA-EE-A2MR-06 4 82074833 82074833 C T PRKG2 Missense_Mutation p.E319K 0.15 tolerated(0.3) probably_damaging(0.998) TCGA-EE-A2MR-06 4 82125844 82125844 C T PRKG2 Missense_Mutation p.G120R 0.21 tolerated(0.51) benign(0.149) TCGA-EE-A2MR-06 4 83750184 83750184 G A SEC31A Missense_Mutation p.P999L 0.32 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A2MR-06 4 84368150 84368150 G A HELQ Silent p.F410F 0.09 TCGA-EE-A2MR-06 4 85617227 85617227 G A WDFY3 Missense_Mutation p.H2933Y 0.18 deleterious(0.03) probably_damaging(0.948) TCGA-EE-A2MR-06 4 8621098 8621098 G A CPZ Missense_Mutation p.M571I 0.19 deleterious(0.03) benign(0.256) TCGA-EE-A2MR-06 4 8621189 8621189 G A CPZ Missense_Mutation p.D602N 0.13 tolerated(0.18) benign(0.035) TCGA-EE-A2MR-06 4 88584106 88584106 C T DMP1 Silent p.L392L 0.12 TCGA-EE-A2MR-06 4 88767531 88767531 C T MEPE Missense_Mutation p.S504F 0.15 tolerated(0.4) unknown(0) TCGA-EE-A2MR-06 4 89015796 89015796 C T ABCG2 Missense_Mutation p.E585K 0.38 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2MR-06 4 89192305 89192305 G A PPM1K Intron 0.35 TCGA-EE-A2MR-06 4 91230397 91230397 C T CCSER1 Missense_Mutation p.P321L 0.24 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-EE-A2MR-06 4 95220653 95220653 C T HPGDS Missense_Mutation p.R193Q 0.10 tolerated(0.48) benign(0.001) TCGA-EE-A2MR-06 4 95497136 95497136 G A PDLIM5 Missense_Mutation p.A112T 0.18 tolerated(0.09) benign(0.223) TCGA-EE-A2MR-06 4 9557787 9557787 G A MIR548I2 3'Flank 0.10 TCGA-EE-A2MR-06 4 9784168 9784168 C T DRD5 Missense_Mutation p.S172F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 98893493 98893493 G A STPG2 Missense_Mutation p.P291S 0.08 tolerated(0.07) benign(0.444) TCGA-EE-A2MR-06 4 9943605 9943605 A T SLC2A9 Missense_Mutation p.L249H 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 4 998080 998080 C T IDUA Nonsense_Mutation p.R621* 0.12 TCGA-EE-A2MR-06 4 99969997 99969997 C T METAP1 Missense_Mutation p.H301Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 5 100147721 100147721 G A ST8SIA4 Missense_Mutation p.P304S 0.13 benign(0.112) TCGA-EE-A2MR-06 5 100147722 100147722 G A ST8SIA4 Silent p.F303F 0.13 TCGA-EE-A2MR-06 5 101572567 101572567 C T SLCO4C1 Missense_Mutation p.G724R 0.38 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2MR-06 5 101572568 101572568 T C SLCO4C1 Silent p.E723E 0.38 TCGA-EE-A2MR-06 5 10239373 10239373 A G FAM173B Missense_Mutation p.F38L 0.14 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 5 10382043 10382043 C T MARCH6 Missense_Mutation p.P108S 0.08 deleterious(0) probably_damaging(0.946) TCGA-EE-A2MR-06 5 11111118 11111118 G A CTNND2 Missense_Mutation p.S772L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 5 112178722 112178722 C T APC Silent p.S2477S 0.17 TCGA-EE-A2MR-06 5 11364996 11364996 G A CTNND2 Missense_Mutation p.S395F 0.16 tolerated(0.11) probably_damaging(0.909) TCGA-EE-A2MR-06 5 114483010 114483010 C T TRIM36 Missense_Mutation p.R127Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 5 115298574 115298574 G A AQPEP Nonsense_Mutation p.W87* 0.11 TCGA-EE-A2MR-06 5 118970426 118970426 G A FAM170A Missense_Mutation p.R328K 0.23 tolerated_low_confidence(0.1) benign(0.01) TCGA-EE-A2MR-06 5 121759141 121759141 G A SNCAIP Missense_Mutation p.E237K 0.23 deleterious(0.01) benign(0.194) TCGA-EE-A2MR-06 5 125887820 125887820 G A ALDH7A1 Missense_Mutation p.R404C 0.24 deleterious(0.01) benign(0.03) TCGA-EE-A2MR-06 5 127477568 127477568 C T SLC12A2 Silent p.I556I 0.10 TCGA-EE-A2MR-06 5 128301981 128301981 G A SLC27A6 Missense_Mutation p.G51R 0.08 tolerated(0.81) benign(0.047) TCGA-EE-A2MR-06 5 132439672 132439672 C T HSPA4 Missense_Mutation p.T758I 0.16 tolerated(0.22) benign(0.067) TCGA-EE-A2MR-06 5 134332079 134332079 C T CATSPER3 Silent p.I123I 0.14 TCGA-EE-A2MR-06 5 134670600 134670600 G A H2AFY 3'UTR 0.25 TCGA-EE-A2MR-06 5 135508252 135508252 C A SMAD5 Missense_Mutation p.P302H 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 5 135587504 135587504 C T TRPC7 Nonsense_Mutation p.W471* 0.22 TCGA-EE-A2MR-06 5 13721223 13721223 G A DNAH5 Silent p.P4055P 0.19 TCGA-EE-A2MR-06 5 13727687 13727687 C T DNAH5 Missense_Mutation p.D3988N 0.21 benign(0.007) TCGA-EE-A2MR-06 5 13729599 13729599 C T DNAH5 Silent p.L3944L 0.12 TCGA-EE-A2MR-06 5 137519947 137519947 C T KIF20A Missense_Mutation p.P458S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 5 137593341 137593341 C T GFRA3 Missense_Mutation p.D258N 0.21 deleterious(0.03) benign(0.098) TCGA-EE-A2MR-06 5 137593450 137593450 G A GFRA3 Silent p.A221A 0.15 TCGA-EE-A2MR-06 5 13766175 13766175 C T DNAH5 Silent p.V3337V 0.12 TCGA-EE-A2MR-06 5 13766188 13766188 T A DNAH5 Missense_Mutation p.K3333I 0.12 possibly_damaging(0.904) TCGA-EE-A2MR-06 5 13769663 13769663 C T DNAH5 Missense_Mutation p.E3223K 0.11 possibly_damaging(0.621) TCGA-EE-A2MR-06 5 13829790 13829790 C T DNAH5 Silent p.Q2091Q 0.18 TCGA-EE-A2MR-06 5 139218319 139218319 C T PSD2 Missense_Mutation p.R644W 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 5 13923529 13923529 C T DNAH5 Missense_Mutation p.G100R 0.33 probably_damaging(0.953) TCGA-EE-A2MR-06 5 140011608 140011608 C T CD14 Missense_Mutation p.V321M 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-EE-A2MR-06 5 140166824 140166824 G A PCDHA1 Missense_Mutation p.E317K 0.15 tolerated_low_confidence(0.34) benign(0.027) TCGA-EE-A2MR-06 5 140167831 140167831 G A PCDHA1 Silent p.K652K 0.14 TCGA-EE-A2MR-06 5 140181151 140181151 G A PCDHA3 Silent p.V123V 0.14 TCGA-EE-A2MR-06 5 140188055 140188055 G A PCDHA4 Missense_Mutation p.R428Q 0.17 tolerated_low_confidence(0.13) benign(0.089) TCGA-EE-A2MR-06 5 140188109 140188109 C T PCDHA4 Missense_Mutation p.A446V 0.13 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EE-A2MR-06 5 140207695 140207695 G A PCDHA6 Missense_Mutation p.D7N 0.13 tolerated_low_confidence(0.2) benign(0.017) TCGA-EE-A2MR-06 5 140208757 140208757 G A PCDHA6 Missense_Mutation p.E361K 0.09 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-EE-A2MR-06 5 140220999 140220999 C T PCDHA8 Silent p.L31L 0.19 TCGA-EE-A2MR-06 5 140229679 140229679 C T PCDHA9 Silent p.F533F 0.08 TCGA-EE-A2MR-06 5 140241124 140241124 C T AC005609.1 3'UTR 0.30 TCGA-EE-A2MR-06 5 140248996 140248996 G A PCDHA11 Missense_Mutation p.S103N 0.16 deleterious_low_confidence(0.02) benign(0.043) TCGA-EE-A2MR-06 5 140306915 140306915 G A PCDHAC1 Silent p.P146P 0.10 TCGA-EE-A2MR-06 5 140308938 140308938 C T PCDHAC1 Intron 0.26 TCGA-EE-A2MR-06 5 140431258 140431258 C T PCDHB1 Missense_Mutation p.S68F 0.08 tolerated(0.19) probably_damaging(0.993) TCGA-EE-A2MR-06 5 140503308 140503308 C T PCDHB4 Silent p.P576P 0.10 TCGA-EE-A2MR-06 5 140537751 140537751 C T PCDHB17 3'UTR 0.14 TCGA-EE-A2MR-06 5 140562585 140562585 G A PCDHB16 Missense_Mutation p.E151K 0.14 tolerated_low_confidence(0.06) benign(0.003) TCGA-EE-A2MR-06 5 140564092 140564092 C T PCDHB16 Missense_Mutation p.S653L 0.09 deleterious_low_confidence(0) possibly_damaging(0.763) TCGA-EE-A2MR-06 5 140573155 140573155 C T PCDHB10 Missense_Mutation p.P344S 0.09 tolerated_low_confidence(0.16) benign(0) TCGA-EE-A2MR-06 5 140574446 140574446 C T PCDHB10 Missense_Mutation p.S774L 0.13 deleterious_low_confidence(0.01) benign(0.002) TCGA-EE-A2MR-06 5 140579977 140579977 C T PCDHB11 Silent p.F210F 0.17 TCGA-EE-A2MR-06 5 140580206 140580206 G A PCDHB11 Missense_Mutation p.D287N 0.10 tolerated_low_confidence(0.07) benign(0.114) TCGA-EE-A2MR-06 5 140581575 140581575 G A PCDHB11 Missense_Mutation p.G743E 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-EE-A2MR-06 5 140581704 140581704 A T PCDHB11 Missense_Mutation p.N786I 0.20 deleterious_low_confidence(0.03) benign(0.021) TCGA-EE-A2MR-06 5 140590499 140590499 C T PCDHB12 Missense_Mutation p.P674S 0.18 tolerated_low_confidence(0.06) benign(0.128) TCGA-EE-A2MR-06 5 140590839 140590839 C T PCDHB12 Missense_Mutation p.P787L 0.16 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A2MR-06 5 140595072 140595072 C T PCDHB13 Silent p.F459F 0.12 TCGA-EE-A2MR-06 5 140595678 140595678 C T PCDHB13 Silent p.L661L 0.09 TCGA-EE-A2MR-06 5 140595819 140595819 C T PCDHB13 Silent p.F708F 0.06 TCGA-EE-A2MR-06 5 140615806 140615806 C T PCDHB18 RNA 0.09 TCGA-EE-A2MR-06 5 140683343 140683343 G A SLC25A2 Silent p.F30F 0.12 TCGA-EE-A2MR-06 5 140711950 140711950 C T PCDHGA1 Missense_Mutation p.L567F 0.12 tolerated_low_confidence(0.09) benign(0.027) TCGA-EE-A2MR-06 5 140719964 140719964 G A PCDHGA2 Missense_Mutation p.A476T 0.08 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-EE-A2MR-06 5 140725839 140725839 C T PCDHGA3 Missense_Mutation p.R747W 0.09 deleterious_low_confidence(0) benign(0.295) TCGA-EE-A2MR-06 5 140731807 140731807 C T PCDHGB1 Silent p.F660F 0.07 TCGA-EE-A2MR-06 5 140734913 140734913 C T PCDHGA4 Missense_Mutation p.A49V 0.19 deleterious_low_confidence(0.02) benign(0.33) TCGA-EE-A2MR-06 5 140736846 140736846 C T PCDHGA4 Silent p.L693L 0.12 TCGA-EE-A2MR-06 5 140754526 140754526 C T PCDHGA6 Silent p.F292F 0.15 TCGA-EE-A2MR-06 5 140754586 140754586 G A PCDHGA6 Silent p.S312S 0.12 TCGA-EE-A2MR-06 5 140769403 140769403 C T PCDHGB4 Missense_Mutation p.P651L 0.15 deleterious(0) possibly_damaging(0.841) TCGA-EE-A2MR-06 5 140790093 140790093 C T PCDHGB6 Missense_Mutation p.S775F 0.09 tolerated(0.05) benign(0.035) TCGA-EE-A2MR-06 5 140801552 140801552 C T PCDHGA11 Missense_Mutation p.P253L 0.13 tolerated_low_confidence(0.12) benign(0.139) TCGA-EE-A2MR-06 5 140802648 140802648 C T PCDHGA11 Silent p.F618F 0.11 TCGA-EE-A2MR-06 5 140864861 140864861 G A PCDHGC4 Missense_Mutation p.E41K 0.15 tolerated(0.81) benign(0.055) TCGA-EE-A2MR-06 5 141248975 141248975 G A PCDH1 Missense_Mutation p.P21L 0.12 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A2MR-06 5 142602087 142602087 C T ARHGAP26 3'UTR 0.36 TCGA-EE-A2MR-06 5 1441490 1441490 G A SLC6A3 Silent p.I134I 0.12 TCGA-EE-A2MR-06 5 1441590 1441590 G A SLC6A3 Missense_Mutation p.P101L 0.13 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MR-06 5 145435594 145435594 G A SH3RF2 Nonsense_Mutation p.W458* 0.09 TCGA-EE-A2MR-06 5 145464086 145464086 G A PLAC8L1 Missense_Mutation p.S148F 0.18 deleterious(0.02) benign(0.2) TCGA-EE-A2MR-06 5 145610271 145610271 C T RBM27 Missense_Mutation p.S214F 0.10 tolerated(0.17) possibly_damaging(0.642) TCGA-EE-A2MR-06 5 146775141 146775141 C T DPYSL3 Silent p.Q649Q 0.40 TCGA-EE-A2MR-06 5 14690314 14690314 C T FAM105B Missense_Mutation p.P254L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 5 147000285 147000285 C T JAKMIP2 Missense_Mutation p.G696S 0.24 tolerated(0.09) possibly_damaging(0.71) TCGA-EE-A2MR-06 5 147830695 147830695 T C HTR4 3'UTR 0.09 TCGA-EE-A2MR-06 5 149001409 149001409 G A ARHGEF37 Silent p.R373R 0.09 TCGA-EE-A2MR-06 5 149441075 149441075 C T CSF1R Missense_Mutation p.V613M 0.09 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 5 149457738 149457738 G A CSF1R Silent p.I222I 0.20 TCGA-EE-A2MR-06 5 149677804 149677804 G A ARSI Missense_Mutation p.P228L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 5 150052042 150052042 A T MYOZ3 Missense_Mutation p.N189Y 0.12 tolerated(1) benign(0.029) TCGA-EE-A2MR-06 5 150416401 150416401 G A TNIP1 Missense_Mutation p.L449F 0.16 tolerated(0.7) probably_damaging(0.977) TCGA-EE-A2MR-06 5 150416402 150416402 G A TNIP1 Silent p.A448A 0.16 TCGA-EE-A2MR-06 5 150646433 150646433 C T GM2A Silent p.L129L 0.20 TCGA-EE-A2MR-06 5 150712866 150712866 G A SLC36A2 Silent p.S254S 0.20 TCGA-EE-A2MR-06 5 150921921 150921921 C T FAT2 Missense_Mutation p.E2923K 0.15 probably_damaging(0.914) TCGA-EE-A2MR-06 5 151235888 151235888 T C GLRA1 Missense_Mutation p.Q178R 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 5 151784098 151784098 G A NMUR2 Missense_Mutation p.P193S 0.11 tolerated(0.07) probably_damaging(0.991) TCGA-EE-A2MR-06 5 154179196 154179196 C T LARP1 Missense_Mutation p.R398C 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MR-06 5 154394782 154394782 G A KIF4B Missense_Mutation p.E455K 0.12 tolerated(0.13) benign(0.021) TCGA-EE-A2MR-06 5 154395958 154395958 G A KIF4B Missense_Mutation p.E847K 0.14 deleterious(0.02) possibly_damaging(0.77) TCGA-EE-A2MR-06 5 156514087 156514087 C T HAVCR2 3'UTR 0.13 TCGA-EE-A2MR-06 5 156590418 156590418 C T FAM71B Silent p.G286G 0.06 TCGA-EE-A2MR-06 5 156644904 156644904 C T ITK Missense_Mutation p.P161L 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 5 156679616 156679616 G A ITK Splice_Site p.X598_splice 0.11 TCGA-EE-A2MR-06 5 156729833 156729833 C T CYFIP2 Missense_Mutation p.P175S 0.09 tolerated(0.49) benign(0.02) TCGA-EE-A2MR-06 5 156752575 156752575 C T CYFIP2 Silent p.F611F 0.16 TCGA-EE-A2MR-06 5 156757823 156757823 C T CYFIP2 Missense_Mutation p.R718C 0.14 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MR-06 5 157053512 157053512 G A SOX30 Missense_Mutation p.H700Y 0.16 tolerated_low_confidence(0.08) benign(0.093) TCGA-EE-A2MR-06 5 157285993 157285993 G A CLINT1 5'UTR 0.10 TCGA-EE-A2MR-06 5 159680456 159680456 G A CCNJL Missense_Mutation p.L413F 0.15 deleterious(0.01) possibly_damaging(0.675) TCGA-EE-A2MR-06 5 161116303 161116303 C T GABRA6 Missense_Mutation p.P164S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 5 16670820 16670820 G A MYO10 Missense_Mutation p.R1900W 0.12 deleterious(0) possibly_damaging(0.793) TCGA-EE-A2MR-06 5 167617384 167617384 C T TENM2 Missense_Mutation p.S871L 0.20 tolerated(0.56) benign(0.003) TCGA-EE-A2MR-06 5 167882444 167882444 C T WWC1 Silent p.S914S 0.08 TCGA-EE-A2MR-06 5 168112875 168112875 G A SLIT3 Silent p.D1124D 0.12 TCGA-EE-A2MR-06 5 168199905 168199905 C A SLIT3 Missense_Mutation p.W447L 0.09 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MR-06 5 168310283 168310283 C T SLIT3 Missense_Mutation p.D158N 0.08 tolerated(0.08) benign(0.013) TCGA-EE-A2MR-06 5 171517270 171517270 C T STK10 Missense_Mutation p.D551N 0.12 tolerated(0.38) probably_damaging(0.937) TCGA-EE-A2MR-06 5 171523556 171523556 G A STK10 Silent p.F293F 0.12 TCGA-EE-A2MR-06 5 175306869 175306869 G A CPLX2 Missense_Mutation p.E76K 0.24 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A2MR-06 5 176314231 176314231 C T HK3 Missense_Mutation p.E570K 0.11 tolerated(0.5) possibly_damaging(0.789) TCGA-EE-A2MR-06 5 176316540 176316540 C T HK3 Missense_Mutation p.M252I 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A2MR-06 5 176823738 176823738 C T SLC34A1 Silent p.F393F 0.12 TCGA-EE-A2MR-06 5 178413434 178413434 G A GRM6 Silent p.F607F 0.11 TCGA-EE-A2MR-06 5 178541002 178541002 G A ADAMTS2 Missense_Mutation p.H1168Y 0.15 deleterious_low_confidence(0.05) benign(0.105) TCGA-EE-A2MR-06 5 179545696 179545696 C T RASGEF1C Missense_Mutation p.M332I 0.10 deleterious(0.02) possibly_damaging(0.837) TCGA-EE-A2MR-06 5 179745923 179745923 G A GFPT2 Silent p.F276F 0.16 TCGA-EE-A2MR-06 5 19721472 19721472 G A CDH18 Silent p.S209S 0.20 TCGA-EE-A2MR-06 5 23510026 23510026 C T PRDM9 Intron 0.09 TCGA-EE-A2MR-06 5 31313513 31313513 C T CDH6 Nonsense_Mutation p.R448* 0.13 TCGA-EE-A2MR-06 5 32074473 32074473 G A PDZD2 Silent p.L1087L 0.09 TCGA-EE-A2MR-06 5 33458688 33458688 C T TARS Silent p.F367F 0.19 TCGA-EE-A2MR-06 5 33549404 33549404 G A ADAMTS12 Missense_Mutation p.H1404Y 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MR-06 5 33881473 33881473 C T ADAMTS12 Silent p.R80R 0.18 TCGA-EE-A2MR-06 5 34043183 34043183 G A C1QTNF3 Silent p.F16F 0.12 TCGA-EE-A2MR-06 5 34909028 34909028 A T RAD1 Missense_Mutation p.S231T 0.11 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A2MR-06 5 35753777 35753777 G A SPEF2 Missense_Mutation p.E1128K 0.22 deleterious(0) benign(0.359) TCGA-EE-A2MR-06 5 35876356 35876356 C T IL7R Missense_Mutation p.S383F 0.25 tolerated(0.3) benign(0.149) TCGA-EE-A2MR-06 5 35910093 35910093 C T CAPSL Missense_Mutation p.E134K 0.15 deleterious(0.02) benign(0.223) TCGA-EE-A2MR-06 5 35910505 35910505 C T CAPSL Missense_Mutation p.G93E 0.17 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2MR-06 5 35955747 35955747 C T UGT3A1 Missense_Mutation p.R432K 0.11 deleterious(0.03) possibly_damaging(0.877) TCGA-EE-A2MR-06 5 36035738 36035738 G A UGT3A2 3'UTR 0.12 TCGA-EE-A2MR-06 5 36035947 36035947 G A UGT3A2 Silent p.V475V 0.13 TCGA-EE-A2MR-06 5 36142655 36142655 G A LMBRD2 Missense_Mutation p.P74L 0.12 tolerated(0.38) benign(0.001) TCGA-EE-A2MR-06 5 38406258 38406258 G A EGFLAM Missense_Mutation p.G248E 0.12 deleterious_low_confidence(0.03) benign(0.216) TCGA-EE-A2MR-06 5 38445752 38445752 C T EGFLAM Intron 0.09 TCGA-EE-A2MR-06 5 38493710 38493710 G A LIFR Missense_Mutation p.S688F 0.16 deleterious(0) possibly_damaging(0.678) TCGA-EE-A2MR-06 5 38510690 38510690 C T LIFR Silent p.L289L 0.19 TCGA-EE-A2MR-06 5 38881854 38881854 G A OSMR Missense_Mutation p.E136K 0.20 tolerated(0.29) benign(0.005) TCGA-EE-A2MR-06 5 38942419 38942419 G A RICTOR Missense_Mutation p.S1705F 0.21 deleterious_low_confidence(0.04) benign(0.178) TCGA-EE-A2MR-06 5 40843438 40843438 G A CARD6 Silent p.R156R 0.20 TCGA-EE-A2MR-06 5 40972595 40972595 C T C7 Missense_Mutation p.S658F 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 5 41052574 41052574 C T MROH2B Missense_Mutation p.R408K 0.17 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 5 41149419 41149419 C T C6 Silent p.R849R 0.29 TCGA-EE-A2MR-06 5 43245837 43245837 C T NIM1K 5'UTR 0.09 TCGA-EE-A2MR-06 5 43529915 43529915 C T PAIP1 Missense_Mutation p.G440E 0.12 deleterious(0.05) probably_damaging(0.976) TCGA-EE-A2MR-06 5 43529916 43529916 C T PAIP1 Missense_Mutation p.G440R 0.12 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 5 476448 476448 C T SLC9A3 Missense_Mutation p.E646K 0.19 deleterious(0.01) benign(0.194) TCGA-EE-A2MR-06 5 477505 477505 C T SLC9A3 Missense_Mutation p.V568I 0.09 tolerated(0.25) possibly_damaging(0.593) TCGA-EE-A2MR-06 5 5191833 5191833 C T ADAMTS16 Missense_Mutation p.R415C 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 5 53751877 53751877 C T HSPB3 Silent p.I86I 0.16 TCGA-EE-A2MR-06 5 5457803 5457803 C T KIAA0947 Silent p.P350P 0.12 TCGA-EE-A2MR-06 5 55212579 55212579 G A IL31RA Silent p.V642V 0.08 TCGA-EE-A2MR-06 5 6337290 6337290 C T CTD-2324F15.2 RNA 0.10 TCGA-EE-A2MR-06 5 64814356 64814356 G A CENPK Silent p.A252A 0.11 TCGA-EE-A2MR-06 5 64850750 64850750 G A CENPK 5'UTR 0.17 TCGA-EE-A2MR-06 5 66409920 66409920 T C MAST4 Silent p.F488F 0.14 TCGA-EE-A2MR-06 5 67589618 67589618 C T PIK3R1 Nonsense_Mutation p.R461* 0.12 TCGA-EE-A2MR-06 5 68805379 68805379 G A OCLN Silent p.V154V 0.10 TCGA-EE-A2MR-06 5 71495673 71495673 C T MAP1B Missense_Mutation p.P2164L 0.16 probably_damaging(0.995) TCGA-EE-A2MR-06 5 71743079 71743079 G A ZNF366 Missense_Mutation p.H564Y 0.09 deleterious(0.01) benign(0.292) TCGA-EE-A2MR-06 5 71756757 71756757 G A ZNF366 Silent p.F189F 0.09 TCGA-EE-A2MR-06 5 71756878 71756878 G A ZNF366 Missense_Mutation p.P149L 0.08 deleterious_low_confidence(0.01) benign(0.045) TCGA-EE-A2MR-06 5 71756976 71756976 G A ZNF366 Silent p.F116F 0.14 TCGA-EE-A2MR-06 5 78376624 78376624 G A BHMT2 Missense_Mutation p.E125K 0.09 tolerated(0.94) benign(0.003) TCGA-EE-A2MR-06 5 7891518 7891518 C T MTRR Missense_Mutation p.S481L 0.17 deleterious(0) possibly_damaging(0.892) TCGA-EE-A2MR-06 5 80021296 80021296 C T MSH3 Silent p.V455V 0.12 TCGA-EE-A2MR-06 5 80382720 80382720 C T RASGRF2 Silent p.I446I 0.14 TCGA-EE-A2MR-06 5 82948454 82948454 G A HAPLN1 Missense_Mutation p.S97F 0.14 deleterious(0) possibly_damaging(0.529) TCGA-EE-A2MR-06 5 90101239 90101239 G A GPR98 Missense_Mutation p.E4934K 0.21 possibly_damaging(0.636) TCGA-EE-A2MR-06 5 90124979 90124979 G A GPR98 Missense_Mutation p.M5529I 0.17 benign(0.001) TCGA-EE-A2MR-06 5 9154728 9154728 G A SEMA5A Silent p.F451F 0.14 TCGA-EE-A2MR-06 5 9380002 9380002 G A SEMA5A Silent p.L19L 0.15 TCGA-EE-A2MR-06 5 93856010 93856010 G A KIAA0825 Missense_Mutation p.R305C 0.19 tolerated(0.2) possibly_damaging(0.799) TCGA-EE-A2MR-06 5 95091130 95091130 C T RHOBTB3 Missense_Mutation p.S238L 0.19 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MR-06 6 100838860 100838860 C T SIM1 Missense_Mutation p.E560K 0.16 tolerated_low_confidence(0.42) possibly_damaging(0.9) TCGA-EE-A2MR-06 6 100957194 100957194 G A ASCC3 3'UTR 0.09 TCGA-EE-A2MR-06 6 107102707 107102707 C T QRSL1 Missense_Mutation p.P318S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 6 107955609 107955609 C T SOBP Missense_Mutation p.P521S 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 6 108489327 108489327 T G NR2E1 Intron 0.26 TCGA-EE-A2MR-06 6 108489328 108489328 C A NR2E1 Intron 0.26 TCGA-EE-A2MR-06 6 10875068 10875068 A T GCM2 Silent p.I227I 0.15 TCGA-EE-A2MR-06 6 10927562 10927562 G A SYCP2L Missense_Mutation p.E468K 0.24 tolerated(0.13) benign(0.01) TCGA-EE-A2MR-06 6 109797389 109797389 C T ZBTB24 Missense_Mutation p.R398Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 110300859 110300859 C T GPR6 Silent p.L182L 0.19 TCGA-EE-A2MR-06 6 110757099 110757099 G A SLC22A16 Silent p.G459G 0.11 TCGA-EE-A2MR-06 6 112508745 112508745 G A LAMA4 Silent p.I291I 0.14 TCGA-EE-A2MR-06 6 116747754 116747754 C T DSE Missense_Mutation p.P145L 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MR-06 6 116757919 116757919 G A DSE Missense_Mutation p.R763Q 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.724) TCGA-EE-A2MR-06 6 116784811 116784811 G A FAM26F Silent p.V297V 0.11 TCGA-EE-A2MR-06 6 116938159 116938159 C T RSPH4A Missense_Mutation p.P125S 0.10 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A2MR-06 6 12124321 12124321 G A HIVEP1 Silent p.R1431R 0.22 TCGA-EE-A2MR-06 6 12131132 12131132 C T HIVEP1 Silent p.R2114R 0.15 TCGA-EE-A2MR-06 6 12296304 12296304 A T EDN1 3'UTR 0.17 TCGA-EE-A2MR-06 6 12296311 12296311 G A EDN1 3'UTR 0.18 TCGA-EE-A2MR-06 6 127767979 127767979 C T KIAA0408 Nonsense_Mutation p.W495* 0.40 TCGA-EE-A2MR-06 6 127797031 127797031 C T SOGA3 Missense_Mutation p.E714K 0.14 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A2MR-06 6 128150661 128150661 C T THEMIS Silent p.L223L 0.10 TCGA-EE-A2MR-06 6 12933921 12933921 C T PHACTR1 Missense_Mutation p.L103F 0.12 unknown(0) TCGA-EE-A2MR-06 6 132004242 132004242 G A ENPP3 Missense_Mutation p.E354K 0.10 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2MR-06 6 133072429 133072429 A T VNN2 Missense_Mutation p.F352Y 0.13 tolerated(1) benign(0.002) TCGA-EE-A2MR-06 6 134210883 134210883 C T TCF21 Silent p.S116S 0.10 TCGA-EE-A2MR-06 6 134350803 134350803 C T SLC2A12 Missense_Mutation p.V54M 0.11 tolerated(0.58) benign(0.078) TCGA-EE-A2MR-06 6 136934293 136934293 G A MAP3K5 Missense_Mutation p.L794F 0.19 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MR-06 6 137332422 137332422 G A IL20RA Missense_Mutation p.P131L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 6 138576674 138576674 C T KIAA1244 Missense_Mutation p.S291L 0.08 tolerated_low_confidence(0.2) benign(0.001) TCGA-EE-A2MR-06 6 139223777 139223777 A T ECT2L 3'UTR 0.08 TCGA-EE-A2MR-06 6 139564004 139564004 C T TXLNB Missense_Mutation p.E572K 0.09 tolerated_low_confidence(0.13) benign(0.006) TCGA-EE-A2MR-06 6 142399932 142399932 G A NMBR Silent p.P177P 0.26 TCGA-EE-A2MR-06 6 143074502 143074502 G A HIVEP2 Silent p.P2361P 0.11 TCGA-EE-A2MR-06 6 143093438 143093438 G A HIVEP2 Missense_Mutation p.S813L 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 6 144262626 144262626 G A PLAGL1 Missense_Mutation p.P443S 0.08 tolerated(0.2) possibly_damaging(0.863) TCGA-EE-A2MR-06 6 147525724 147525724 C T STXBP5 Missense_Mutation p.S19L 0.17 tolerated(0.17) benign(0.026) TCGA-EE-A2MR-06 6 150386655 150386655 C T ULBP3 Missense_Mutation p.M169I 0.16 tolerated(0.09) possibly_damaging(0.768) TCGA-EE-A2MR-06 6 150464463 150464463 G A PPP1R14C Silent p.E45E 0.26 TCGA-EE-A2MR-06 6 151151733 151151733 G A PLEKHG1 Missense_Mutation p.G496R 0.11 tolerated(0.09) benign(0.01) TCGA-EE-A2MR-06 6 151673660 151673660 G A AKAP12 Silent p.V1378V 0.14 TCGA-EE-A2MR-06 6 152464812 152464812 G A SYNE1 Silent p.I8355I 0.11 TCGA-EE-A2MR-06 6 152841653 152841653 T A SYNE1 Nonsense_Mutation p.K84* 0.14 TCGA-EE-A2MR-06 6 153077365 153077365 G A VIP Silent p.K144K 0.21 TCGA-EE-A2MR-06 6 154412276 154412276 G A OPRM1 Missense_Mutation p.R371Q 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 6 155596820 155596820 G A CLDN20 5'UTR 0.13 TCGA-EE-A2MR-06 6 158509713 158509713 C T SYNJ2 Missense_Mutation p.S1122L 0.15 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EE-A2MR-06 6 158514087 158514087 C A SYNJ2 Missense_Mutation p.P1232Q 0.12 deleterious_low_confidence(0.03) benign(0.397) TCGA-EE-A2MR-06 6 158927814 158927814 C T TULP4 3'UTR 0.36 TCGA-EE-A2MR-06 6 159644573 159644573 G A FNDC1 Silent p.L260L 0.19 TCGA-EE-A2MR-06 6 160328024 160328024 G A MAS1 Missense_Mutation p.E13K 0.18 tolerated(0.72) benign(0.001) TCGA-EE-A2MR-06 6 160468838 160468838 C T IGF2R Silent p.S748S 0.15 TCGA-EE-A2MR-06 6 160913865 160913865 G A LPAL2 RNA 0.12 TCGA-EE-A2MR-06 6 161139393 161139393 G A PLG Silent p.G285G 0.08 TCGA-EE-A2MR-06 6 161157928 161157928 C T PLG Missense_Mutation p.S564L 0.13 tolerated(0.06) benign(0.002) TCGA-EE-A2MR-06 6 161157941 161157941 G A PLG Silent p.G568G 0.14 TCGA-EE-A2MR-06 6 161471000 161471000 C T MAP3K4 Missense_Mutation p.R566C 0.16 tolerated(0.1) benign(0.001) TCGA-EE-A2MR-06 6 163235239 163235239 C T PACRG Nonsense_Mutation p.R73* 0.12 TCGA-EE-A2MR-06 6 165715174 165715174 C T C6orf118 Missense_Mutation p.D213N 0.11 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A2MR-06 6 168265363 168265363 C T MLLT4 Nonsense_Mutation p.R80* 0.15 TCGA-EE-A2MR-06 6 168272960 168272960 C T MLLT4 Missense_Mutation p.L161F 0.08 tolerated(0.1) probably_damaging(1) TCGA-EE-A2MR-06 6 170140240 170140240 G A TCTE3 3'UTR 0.21 TCGA-EE-A2MR-06 6 170176145 170176145 C T ERMARD Missense_Mutation p.R502C 0.09 tolerated(0.11) benign(0) TCGA-EE-A2MR-06 6 18139944 18139944 G A TPMT Missense_Mutation p.S124F 0.21 deleterious(0) probably_damaging(0.926) TCGA-EE-A2MR-06 6 24433449 24433449 C T GPLD1 Missense_Mutation p.G801E 0.09 deleterious(0) probably_damaging(0.935) TCGA-EE-A2MR-06 6 25689716 25689716 G T SCGN Nonsense_Mutation p.E197* 0.10 TCGA-EE-A2MR-06 6 25813418 25813418 G A SLC17A1 Missense_Mutation p.L214F 0.16 tolerated(0.16) probably_damaging(0.973) TCGA-EE-A2MR-06 6 25826824 25826824 G A SLC17A1 Silent p.F24F 0.23 TCGA-EE-A2MR-06 6 26413817 26413817 C T BTN3A1 Missense_Mutation p.S480L 0.09 deleterious(0.03) benign(0.424) TCGA-EE-A2MR-06 6 26446172 26446172 C T BTN3A3 Missense_Mutation p.S225F 0.09 tolerated(0.71) possibly_damaging(0.73) TCGA-EE-A2MR-06 6 26505314 26505314 G C BTN1A1 Missense_Mutation p.E197Q 0.10 tolerated(0.09) benign(0.209) TCGA-EE-A2MR-06 6 27101100 27101100 C T HIST1H2AG Missense_Mutation p.L84F 0.09 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-EE-A2MR-06 6 27222527 27222527 C T PRSS16 Silent p.S402S 0.11 TCGA-EE-A2MR-06 6 27222596 27222596 G A PRSS16 Silent p.T425T 0.11 TCGA-EE-A2MR-06 6 27435652 27435652 G A ZNF184 Missense_Mutation p.L19F 0.28 tolerated(0.13) benign(0.001) TCGA-EE-A2MR-06 6 27925719 27925719 G A OR2B6 Missense_Mutation p.R234Q 0.14 tolerated(0.1) benign(0.078) TCGA-EE-A2MR-06 6 28227232 28227232 C T NKAPL Missense_Mutation p.P28L 0.09 deleterious(0) unknown(0) TCGA-EE-A2MR-06 6 29054618 29054618 C T OR2B3 Missense_Mutation p.M136I 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MR-06 6 29556420 29556420 G A OR2H2 Silent p.R233R 0.09 TCGA-EE-A2MR-06 6 29644850 29644850 C T ZFP57 5'UTR 0.09 TCGA-EE-A2MR-06 6 30121561 30121561 G A TRIM10 3'UTR 0.09 TCGA-EE-A2MR-06 6 30121959 30121959 G A TRIM10 Silent p.F411F 0.11 TCGA-EE-A2MR-06 6 30576621 30576621 G A PPP1R10 Missense_Mutation p.P89S 0.10 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A2MR-06 6 30624281 30624281 G A DHX16 Missense_Mutation p.H773Y 0.12 deleterious(0) unknown(0) TCGA-EE-A2MR-06 6 30860213 30860213 C T DDR1 Silent p.A331A 0.16 TCGA-EE-A2MR-06 6 30886664 30886664 C T VARS2 Missense_Mutation p.A379V 0.11 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A2MR-06 6 30954770 30954770 C T MUC21 Missense_Mutation p.S273F 0.11 deleterious(0.01) unknown(0) TCGA-EE-A2MR-06 6 30954855 30954855 C T MUC21 Silent p.T301T 0.08 TCGA-EE-A2MR-06 6 31084560 31084560 G A CDSN Missense_Mutation p.L278F 0.09 tolerated_low_confidence(0.37) unknown(0) TCGA-EE-A2MR-06 6 31504168 31504168 G A DDX39B Intron 0.16 TCGA-EE-A2MR-06 6 31525483 31525483 C T NFKBIL1 Missense_Mutation p.P138L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 6 31600050 31600050 C T PRRC2A Silent p.G1200G 0.15 TCGA-EE-A2MR-06 6 31675320 31675320 C T LY6G6F Silent p.H46H 0.15 TCGA-EE-A2MR-06 6 31691628 31691628 C T C6orf25 Missense_Mutation p.R92W 0.14 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-EE-A2MR-06 6 31733779 31733779 C T VWA7 Missense_Mutation p.D794N 0.08 tolerated(0.2) benign(0.099) TCGA-EE-A2MR-06 6 31736868 31736868 C T VWA7 Missense_Mutation p.G477E 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 6 31740776 31740776 G A VWA7 Missense_Mutation p.P348S 0.13 deleterious(0.05) possibly_damaging(0.843) TCGA-EE-A2MR-06 6 31746806 31746806 G A VARS Missense_Mutation p.R1222C 0.14 deleterious(0.04) benign(0.298) TCGA-EE-A2MR-06 6 31752246 31752246 G A VARS Missense_Mutation p.L501F 0.12 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A2MR-06 6 31760544 31760544 A G VARS Silent p.S217S 0.10 TCGA-EE-A2MR-06 6 31778920 31778920 G A HSPA1L Missense_Mutation p.S277L 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 31839332 31839332 C T SLC44A4 Missense_Mutation p.G179E 0.14 tolerated(0.21) possibly_damaging(0.78) TCGA-EE-A2MR-06 6 31895464 31895464 C T C2 5'UTR 0.06 TCGA-EE-A2MR-06 6 31896664 31896664 G A CFB Intron 0.12 TCGA-EE-A2MR-06 6 31901481 31901481 G A C2 Silent p.S179S 0.11 TCGA-EE-A2MR-06 6 31902172 31902172 C T C2 Intron 0.12 TCGA-EE-A2MR-06 6 31905101 31905101 G A CFB Missense_Mutation p.E179K 0.07 tolerated(0.34) benign(0.032) TCGA-EE-A2MR-06 6 31911941 31911941 C T CFB Missense_Mutation p.P461S 0.06 deleterious(0.01) benign(0.043) TCGA-EE-A2MR-06 6 31912534 31912534 G A CFB Missense_Mutation p.E492K 0.08 tolerated(0.57) benign(0.003) TCGA-EE-A2MR-06 6 31913069 31913069 C T C2 Missense_Mutation p.L732F 0.08 deleterious(0) possibly_damaging(0.741) TCGA-EE-A2MR-06 6 31918460 31918460 G A CFB Silent p.G1065G 0.06 TCGA-EE-A2MR-06 6 31932086 31932086 C T SKIV2L Silent p.I646I 0.08 TCGA-EE-A2MR-06 6 32007585 32007585 C T CYP21A2 Silent p.I237I 0.09 TCGA-EE-A2MR-06 6 32013904 32013904 G A TNXB 5'UTR 0.16 TCGA-EE-A2MR-06 6 32017293 32017293 C T TNXB 5'Flank 0.13 TCGA-EE-A2MR-06 6 32026058 32026058 G A TNXB Silent p.S2534S 0.11 TCGA-EE-A2MR-06 6 32026072 32026072 C G TNXB Missense_Mutation p.V2530L 0.07 probably_damaging(0.966) TCGA-EE-A2MR-06 6 32035753 32035753 C T TNXB Missense_Mutation p.E2077K 0.05 benign(0.121) TCGA-EE-A2MR-06 6 32046887 32046887 C T RNA5SP206 5'Flank 0.16 TCGA-EE-A2MR-06 6 32050069 32050069 G A RNA5SP206 5'Flank 0.10 TCGA-EE-A2MR-06 6 32052303 32052303 G A TNXB Missense_Mutation p.P1111L 0.06 probably_damaging(0.996) TCGA-EE-A2MR-06 6 32052304 32052304 G A TNXB Missense_Mutation p.P1111S 0.06 probably_damaging(0.99) TCGA-EE-A2MR-06 6 32053854 32053854 G A TNXB Missense_Mutation p.P941S 0.08 benign(0.185) TCGA-EE-A2MR-06 6 32159677 32159677 G A GPSM3 Missense_Mutation p.P52S 0.10 tolerated_low_confidence(0.17) probably_damaging(0.968) TCGA-EE-A2MR-06 6 32188271 32188271 T G NOTCH4 Missense_Mutation p.D357A 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 32410965 32410965 C T HLA-DRA Missense_Mutation p.P111L 0.08 tolerated(0.07) benign(0.044) TCGA-EE-A2MR-06 6 32818754 32818754 G A TAP1 Silent p.F399F 0.10 TCGA-EE-A2MR-06 6 32944418 32944418 C T BRD2 Missense_Mutation p.P302L 0.20 tolerated(0.06) possibly_damaging(0.763) TCGA-EE-A2MR-06 6 33137636 33137636 G A COL11A2 Missense_Mutation p.P1135L 0.11 unknown(0) TCGA-EE-A2MR-06 6 33154504 33154504 C T COL11A2 Missense_Mutation p.R233K 0.24 benign(0.021) TCGA-EE-A2MR-06 6 33423398 33423398 C T ZBTB9 Missense_Mutation p.S174L 0.14 deleterious(0.01) benign(0.122) TCGA-EE-A2MR-06 6 34059748 34059748 G A GRM4 Silent p.L216L 0.11 TCGA-EE-A2MR-06 6 34498236 34498236 G A PACSIN1 Splice_Site p.X304_splice 0.17 TCGA-EE-A2MR-06 6 35048896 35048896 C T ANKS1A Silent p.D890D 0.12 TCGA-EE-A2MR-06 6 35547963 35547963 C T FKBP5 Silent p.G292G 0.08 TCGA-EE-A2MR-06 6 35588003 35588003 C T FKBP5 Missense_Mutation p.G100E 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 35705835 35705835 G A ARMC12 Silent p.R92R 0.14 TCGA-EE-A2MR-06 6 35705836 35705836 G T ARMC12 Missense_Mutation p.D93Y 0.15 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MR-06 6 35837316 35837316 C A SRPK1 Nonsense_Mutation p.E452* 0.10 TCGA-EE-A2MR-06 6 35911829 35911829 G A SLC26A8 Missense_Mutation p.H921Y 0.17 tolerated_low_confidence(0.74) benign(0.009) TCGA-EE-A2MR-06 6 36270122 36270122 C T PNPLA1 Silent p.P420P 0.11 TCGA-EE-A2MR-06 6 36270127 36270127 C T PNPLA1 Missense_Mutation p.S422L 0.17 tolerated_low_confidence(0.11) benign(0.009) TCGA-EE-A2MR-06 6 36290136 36290136 C T C6orf222 Missense_Mutation p.G519S 0.12 tolerated(1) benign(0.001) TCGA-EE-A2MR-06 6 36298165 36298165 C T C6orf222 Silent p.K101K 0.10 TCGA-EE-A2MR-06 6 36343727 36343727 C T ETV7 Silent p.A76A 0.10 TCGA-EE-A2MR-06 6 36359601 36359601 G A PXT1 Silent p.F117F 0.09 TCGA-EE-A2MR-06 6 36767781 36767781 A C CPNE5 Missense_Mutation p.Y84D 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 36882459 36882459 C T C6orf89 Missense_Mutation p.P236S 0.07 tolerated(0.88) benign(0.009) TCGA-EE-A2MR-06 6 36973614 36973614 G A FGD2 Silent p.E7E 0.09 TCGA-EE-A2MR-06 6 3737388 3737388 G A PXDC1 Missense_Mutation p.P131S 0.08 tolerated_low_confidence(0.1) benign(0.129) TCGA-EE-A2MR-06 6 37411833 37411833 T G CMTR1 Silent p.S64S 0.14 TCGA-EE-A2MR-06 6 37619923 37619923 C T MDGA1 Silent p.E392E 0.12 TCGA-EE-A2MR-06 6 37622190 37622190 G A MDGA1 Missense_Mutation p.P281L 0.11 tolerated(0.12) benign(0.015) TCGA-EE-A2MR-06 6 37622191 37622191 G A MDGA1 Missense_Mutation p.P281S 0.11 tolerated(0.53) possibly_damaging(0.659) TCGA-EE-A2MR-06 6 38561937 38561937 G A BTBD9 Missense_Mutation p.H118Y 0.07 deleterious(0) unknown(0) TCGA-EE-A2MR-06 6 38702323 38702323 G A DNAH8 Silent p.P11P 0.12 TCGA-EE-A2MR-06 6 38729526 38729526 G A DNAH8 Missense_Mutation p.G305R 0.20 probably_damaging(0.997) TCGA-EE-A2MR-06 6 38781841 38781841 G A DNAH8 Missense_Mutation p.R873Q 0.09 benign(0) TCGA-EE-A2MR-06 6 38950129 38950129 G A DNAH8 Missense_Mutation p.R4064Q 0.11 probably_damaging(0.964) TCGA-EE-A2MR-06 6 39040750 39040750 G A GLP1R Missense_Mutation p.A208T 0.16 tolerated(0.54) probably_damaging(0.993) TCGA-EE-A2MR-06 6 39159286 39159286 G A KCNK5 Missense_Mutation p.L294F 0.06 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MR-06 6 39267342 39267342 G A KCNK17 Missense_Mutation p.S287F 0.13 deleterious(0.04) benign(0.147) TCGA-EE-A2MR-06 6 39282887 39282887 C T KCNK16 3'UTR 0.12 TCGA-EE-A2MR-06 6 39282888 39282888 C T KCNK16 3'UTR 0.11 TCGA-EE-A2MR-06 6 39282993 39282993 G A KCNK16 Silent p.L292L 0.15 TCGA-EE-A2MR-06 6 4032372 4032372 C T PRPF4B Silent p.I207I 0.11 TCGA-EE-A2MR-06 6 40360022 40360022 C T LRFN2 Missense_Mutation p.R677K 0.28 tolerated(0.92) benign(0.021) TCGA-EE-A2MR-06 6 4069751 4069751 C T FAM217A Missense_Mutation p.E236K 0.14 tolerated(0.17) possibly_damaging(0.544) TCGA-EE-A2MR-06 6 41162324 41162324 G A TREML2 Silent p.S208S 0.16 TCGA-EE-A2MR-06 6 41318520 41318520 C T NCR2 Missense_Mutation p.S250F 0.17 tolerated_low_confidence(0.54) possibly_damaging(0.831) TCGA-EE-A2MR-06 6 41621155 41621155 G A MDFI Missense_Mutation p.E195K 0.11 deleterious(0.01) benign(0.443) TCGA-EE-A2MR-06 6 41877043 41877043 G A MED20 Silent p.V129V 0.12 TCGA-EE-A2MR-06 6 42236862 42236862 C T TRERF1 Missense_Mutation p.R156Q 0.14 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-EE-A2MR-06 6 42237033 42237033 C T TRERF1 Missense_Mutation p.G99E 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.884) TCGA-EE-A2MR-06 6 42237081 42237081 C T TRERF1 Missense_Mutation p.G83E 0.16 tolerated_low_confidence(0.11) benign(0.076) TCGA-EE-A2MR-06 6 42931281 42931281 G A GNMT Missense_Mutation p.R242Q 0.14 deleterious(0.03) probably_damaging(0.952) TCGA-EE-A2MR-06 6 43144299 43144299 C T SRF Silent p.A352A 0.11 TCGA-EE-A2MR-06 6 43251172 43251172 G A TTBK1 Silent p.P898P 0.24 TCGA-EE-A2MR-06 6 43251427 43251427 C T TTBK1 Silent p.L983L 0.17 TCGA-EE-A2MR-06 6 43269367 43269367 C T SLC22A7 Missense_Mutation p.S333L 0.11 deleterious(0.04) benign(0.246) TCGA-EE-A2MR-06 6 43325408 43325408 G A ZNF318 Missense_Mutation p.P215L 0.12 probably_damaging(0.999) TCGA-EE-A2MR-06 6 43403497 43403497 G T ABCC10 Silent p.T539T 0.12 TCGA-EE-A2MR-06 6 43418411 43418411 C T DLK2 Missense_Mutation p.G340R 0.11 tolerated_low_confidence(0.25) benign(0.255) TCGA-EE-A2MR-06 6 43624454 43624454 C T RSPH9 Missense_Mutation p.P207S 0.07 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MR-06 6 44102477 44102477 C T TMEM63B Silent p.F52F 0.10 TCGA-EE-A2MR-06 6 44144700 44144700 G A CAPN11 Missense_Mutation p.R401K 0.14 deleterious(0.04) benign(0.137) TCGA-EE-A2MR-06 6 44199764 44199764 C T SLC29A1 Silent p.F298F 0.11 TCGA-EE-A2MR-06 6 44272223 44272223 G A AARS2 Silent p.I600I 0.13 TCGA-EE-A2MR-06 6 44278886 44278886 G A AARS2 Silent p.S198S 0.10 TCGA-EE-A2MR-06 6 46787280 46787280 T C MEP1A Missense_Mutation p.V132A 0.54 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MR-06 6 46826469 46826469 G A GPR116 Silent p.I1057I 0.09 TCGA-EE-A2MR-06 6 46847694 46847694 G A GPR116 Silent p.S299S 0.25 TCGA-EE-A2MR-06 6 46996740 46996740 C T GPR110 Missense_Mutation p.G20S 0.14 tolerated(0.15) benign(0.043) TCGA-EE-A2MR-06 6 47251796 47251796 G A TNFRSF21 Missense_Mutation p.S374L 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 6 49753847 49753847 T A PGK2 Missense_Mutation p.T352S 0.11 tolerated(0.3) benign(0.133) TCGA-EE-A2MR-06 6 49754727 49754727 T C PGK2 Silent p.V58V 0.12 TCGA-EE-A2MR-06 6 51613141 51613141 G A PKHD1 Silent p.L3091L 0.11 TCGA-EE-A2MR-06 6 52103617 52103617 C T IL17F Missense_Mutation p.M55I 0.10 tolerated(0.09) benign(0.001) TCGA-EE-A2MR-06 6 52367910 52367910 G A TRAM2 3'UTR 0.12 TCGA-EE-A2MR-06 6 52657764 52657764 C T GSTA1 Missense_Mutation p.D146N 0.12 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A2MR-06 6 52874275 52874275 G A ICK Missense_Mutation p.S528F 0.10 tolerated(0.1) benign(0.396) TCGA-EE-A2MR-06 6 53519866 53519866 C T KLHL31 Missense_Mutation p.E69K 0.10 tolerated(0.1) benign(0.212) TCGA-EE-A2MR-06 6 53989592 53989592 G A MLIP Missense_Mutation p.G181R 0.10 deleterious(0.04) possibly_damaging(0.803) TCGA-EE-A2MR-06 6 56342222 56342222 G A DST Missense_Mutation p.T4576I 0.09 benign(0.038) TCGA-EE-A2MR-06 6 6145998 6145998 G A F13A1 Missense_Mutation p.R685W 0.15 deleterious(0.02) benign(0.266) TCGA-EE-A2MR-06 6 63990302 63990302 C T LGSN Missense_Mutation p.G385E 0.10 tolerated(0.05) possibly_damaging(0.86) TCGA-EE-A2MR-06 6 73904392 73904392 C T KCNQ5 Missense_Mutation p.S704L 0.09 deleterious(0.02) benign(0.058) TCGA-EE-A2MR-06 6 7580448 7580448 G A DSP Nonsense_Mutation p.W1342* 0.09 TCGA-EE-A2MR-06 6 7583528 7583528 C T DSP Silent p.F2011F 0.09 TCGA-EE-A2MR-06 6 7583684 7583684 G A DSP Silent p.R2063R 0.08 TCGA-EE-A2MR-06 6 7584130 7584130 G A DSP Missense_Mutation p.G2212E 0.12 probably_damaging(1) TCGA-EE-A2MR-06 6 7586077 7586077 C T DSP Missense_Mutation p.S2861F 0.20 possibly_damaging(0.735) TCGA-EE-A2MR-06 6 75893709 75893709 C T COL12A1 Silent p.G383G 0.17 TCGA-EE-A2MR-06 6 76023657 76023657 C T FILIP1 Missense_Mutation p.E631K 0.10 deleterious(0.03) possibly_damaging(0.695) TCGA-EE-A2MR-06 6 76024113 76024113 C T FILIP1 Missense_Mutation p.E479K 0.10 deleterious(0) benign(0.301) TCGA-EE-A2MR-06 6 76063328 76063328 C T FILIP1 Missense_Mutation p.E186K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 6 76566926 76566926 G A MYO6 Missense_Mutation p.E446K 0.16 tolerated(0.77) unknown(0) TCGA-EE-A2MR-06 6 78172485 78172485 G A HTR1B Silent p.S212S 0.23 TCGA-EE-A2MR-06 6 80636063 80636063 G A ELOVL4 Missense_Mutation p.P46S 0.26 deleterious(0.01) possibly_damaging(0.706) TCGA-EE-A2MR-06 6 86203648 86203648 G A NT5E Missense_Mutation p.G551R 0.13 deleterious(0) possibly_damaging(0.643) TCGA-EE-A2MR-06 6 89868145 89868145 C T PM20D2 Silent p.F338F 0.12 TCGA-EE-A2MR-06 6 89978948 89978948 G A GABRR2 Silent p.F98F 0.09 TCGA-EE-A2MR-06 6 90648040 90648040 G A BACH2 Silent p.I622I 0.12 TCGA-EE-A2MR-06 6 97052718 97052718 G A FHL5 Silent p.K84K 0.10 TCGA-EE-A2MR-06 6 99729201 99729201 G A FAXC Missense_Mutation p.P357S 0.21 tolerated_low_confidence(0.27) benign(0.007) TCGA-EE-A2MR-06 6 99739584 99739584 G A FAXC Silent p.I312I 0.13 TCGA-EE-A2MR-06 7 100082951 100082951 G A NYAP1 Missense_Mutation p.R6Q 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2MR-06 7 100086030 100086030 G A NYAP1 Missense_Mutation p.R229Q 0.14 tolerated(0.12) probably_damaging(0.975) TCGA-EE-A2MR-06 7 100184225 100184225 G A FBXO24 5'Flank 0.22 TCGA-EE-A2MR-06 7 100212532 100212532 T A MOSPD3 Nonsense_Mutation p.L185* 0.27 TCGA-EE-A2MR-06 7 100359971 100359971 G A ZAN Missense_Mutation p.E1326K 0.11 unknown(0) TCGA-EE-A2MR-06 7 100382286 100382286 C T ZAN Missense_Mutation p.P2221S 0.10 unknown(0) TCGA-EE-A2MR-06 7 100451836 100451836 C T SLC12A9 Missense_Mutation p.S6L 0.08 deleterious(0) possibly_damaging(0.761) TCGA-EE-A2MR-06 7 100490067 100490067 C T ACHE Missense_Mutation p.E481K 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 7 100675124 100675124 G A MUC17 Missense_Mutation p.E143K 0.10 benign(0.004) TCGA-EE-A2MR-06 7 100676679 100676679 C T MUC17 Missense_Mutation p.T661I 0.10 benign(0.035) TCGA-EE-A2MR-06 7 100680830 100680830 C T MUC17 Missense_Mutation p.P2045S 0.23 unknown(0) TCGA-EE-A2MR-06 7 100681655 100681655 C T MUC17 Missense_Mutation p.P2320S 0.22 unknown(0) TCGA-EE-A2MR-06 7 100682121 100682121 C T MUC17 Missense_Mutation p.T2475I 0.14 probably_damaging(0.96) TCGA-EE-A2MR-06 7 100683577 100683577 C T MUC17 Silent p.T2960T 0.18 TCGA-EE-A2MR-06 7 100684421 100684421 C T MUC17 Missense_Mutation p.L3242F 0.13 benign(0.271) TCGA-EE-A2MR-06 7 100686128 100686128 G A MUC17 Missense_Mutation p.E3811K 0.09 benign(0.001) TCGA-EE-A2MR-06 7 100841579 100841579 C T MOGAT3 Silent p.V187V 0.11 TCGA-EE-A2MR-06 7 101845319 101845319 C T CUX1 Silent p.S925S 0.11 TCGA-EE-A2MR-06 7 102553616 102553616 A G FBXL13 Missense_Mutation p.F309L 0.14 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MR-06 7 103234861 103234861 C T RELN Silent p.G1206G 0.12 TCGA-EE-A2MR-06 7 104773269 104773269 G A SRPK2 Missense_Mutation p.T574I 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MR-06 7 105653376 105653376 G A CDHR3 Missense_Mutation p.D375N 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 7 106924055 106924055 G A COG5 Missense_Mutation p.S510F 0.12 deleterious(0) possibly_damaging(0.882) TCGA-EE-A2MR-06 7 107393942 107393942 T A CBLL1 Missense_Mutation p.F90I 0.14 tolerated(0.09) benign(0.294) TCGA-EE-A2MR-06 7 110303671 110303671 C T IMMP2L Missense_Mutation p.R172K 0.09 tolerated(0.94) benign(0) TCGA-EE-A2MR-06 7 11441515 11441515 C T THSD7A Missense_Mutation p.G1440R 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 7 116397718 116397718 G A MET Silent p.P664P 0.42 TCGA-EE-A2MR-06 7 11676576 11676576 C T THSD7A Missense_Mutation p.R68Q 0.14 tolerated(0.1) possibly_damaging(0.561) TCGA-EE-A2MR-06 7 116955218 116955218 G A WNT2 Silent p.I165I 0.09 TCGA-EE-A2MR-06 7 117175451 117175451 G A CFTR Missense_Mutation p.M243I 0.21 tolerated(0.09) benign(0.001) TCGA-EE-A2MR-06 7 117431893 117431893 G A CTTNBP2 Nonsense_Mutation p.Q453* 0.06 TCGA-EE-A2MR-06 7 121773727 121773727 C T AASS Silent p.K18K 0.17 TCGA-EE-A2MR-06 7 122342352 122342352 G C RNF148 Silent p.V151V 0.12 TCGA-EE-A2MR-06 7 123508466 123508466 C T HYAL4 Missense_Mutation p.P47S 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 7 124386531 124386531 G A GPR37 3'UTR 0.23 TCGA-EE-A2MR-06 7 126882852 126882852 C T GRM8 Missense_Mutation p.G136E 0.28 deleterious(0.03) probably_damaging(0.913) TCGA-EE-A2MR-06 7 127239557 127239557 G A FSCN3 Missense_Mutation p.D415N 0.08 deleterious(0.02) benign(0.064) TCGA-EE-A2MR-06 7 128097527 128097527 C T HILPDA 3'UTR 0.14 TCGA-EE-A2MR-06 7 128133876 128133876 C T METTL2B Missense_Mutation p.P230S 0.08 tolerated(0.42) benign(0.035) TCGA-EE-A2MR-06 7 128477558 128477558 G A FLNC Missense_Mutation p.R269Q 0.11 deleterious(0.03) benign(0.182) TCGA-EE-A2MR-06 7 128486211 128486211 G A FLNC Missense_Mutation p.E1320K 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2MR-06 7 128490512 128490512 C T FLNC Silent p.F1791F 0.10 TCGA-EE-A2MR-06 7 129104486 129104486 C T STRIP2 Silent p.I561I 0.17 TCGA-EE-A2MR-06 7 129845319 129845319 G A TMEM209 5'UTR 0.17 TCGA-EE-A2MR-06 7 129962364 129962364 G A CPA4 Missense_Mutation p.D372N 0.09 tolerated(0.28) benign(0.049) TCGA-EE-A2MR-06 7 130008274 130008274 G A CPA5 Missense_Mutation p.D383N 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 7 130023569 130023569 C T CPA1 Silent p.L210L 0.07 TCGA-EE-A2MR-06 7 131151038 131151038 C T MKLN1 Missense_Mutation p.H598Y 0.09 deleterious(0) possibly_damaging(0.54) TCGA-EE-A2MR-06 7 131831424 131831424 G A PLXNA4 Missense_Mutation p.L1634F 0.18 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A2MR-06 7 131866224 131866224 G A PLXNA4 Silent p.F1136F 0.08 TCGA-EE-A2MR-06 7 135418855 135418855 C T FAM180A Silent p.L130L 0.12 TCGA-EE-A2MR-06 7 136848968 136848968 G A hsa-mir-490 Intron 0.10 TCGA-EE-A2MR-06 7 138255624 138255624 C T TRIM24 Missense_Mutation p.S585F 0.17 tolerated(0.07) benign(0.129) TCGA-EE-A2MR-06 7 138429969 138429969 G A ATP6V0A4 Silent p.S459S 0.23 TCGA-EE-A2MR-06 7 138545943 138545943 C T KIAA1549 Missense_Mutation p.R1730Q 0.09 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A2MR-06 7 138545963 138545963 G A KIAA1549 Silent p.T1723T 0.19 TCGA-EE-A2MR-06 7 139226837 139226837 G A CLEC2L Nonsense_Mutation p.W168* 0.12 TCGA-EE-A2MR-06 7 139281519 139281519 G A HIPK2 Silent p.V887V 0.22 TCGA-EE-A2MR-06 7 139661795 139661795 C T TBXAS1 Silent p.I346I 0.11 TCGA-EE-A2MR-06 7 139724440 139724440 G A PARP12 Nonsense_Mutation p.Q676* 0.28 TCGA-EE-A2MR-06 7 13975401 13975401 G A ETV1 Silent p.D162D 0.07 TCGA-EE-A2MR-06 7 139756822 139756822 G A PARP12 Silent p.S198S 0.14 TCGA-EE-A2MR-06 7 140266982 140266982 C T DENND2A Silent p.E561E 0.21 TCGA-EE-A2MR-06 7 141408849 141408849 A G WEE2 Silent p.Q97Q 0.17 TCGA-EE-A2MR-06 7 141441975 141441975 C T SSBP1 Missense_Mutation p.R11C 0.15 deleterious(0.04) benign(0.008) TCGA-EE-A2MR-06 7 141443372 141443372 G A SSBP1 Missense_Mutation p.V33M 0.20 deleterious(0) probably_damaging(0.963) TCGA-EE-A2MR-06 7 141443401 141443401 C A SSBP1 Missense_Mutation p.D42E 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A2MR-06 7 141443402 141443402 C T SSBP1 Missense_Mutation p.P43S 0.19 deleterious(0.03) possibly_damaging(0.876) TCGA-EE-A2MR-06 7 141464174 141464174 T C TAS2R3 Silent p.S72S 0.19 TCGA-EE-A2MR-06 7 141643749 141643749 C T CLEC5A Missense_Mutation p.G52E 0.26 tolerated(0.35) benign(0.01) TCGA-EE-A2MR-06 7 141754563 141754563 C T MGAM Missense_Mutation p.P1057S 0.08 tolerated(0.15) benign(0.012) TCGA-EE-A2MR-06 7 141765418 141765418 C T MGAM Intron 0.18 TCGA-EE-A2MR-06 7 142001040 142001040 C T TRBV2 Silent p.P11P 0.20 TCGA-EE-A2MR-06 7 142028365 142028365 G A TRBV6-1 Silent p.K33K 0.15 TCGA-EE-A2MR-06 7 142111844 142111844 G A TRBV5-7 Missense_Mutation p.L6F 0.14 tolerated(0.14) benign(0.227) TCGA-EE-A2MR-06 7 142124391 142124391 G A TRBV6-8 Silent p.F29F 0.30 TCGA-EE-A2MR-06 7 142139476 142139476 G A TRBV7-6 Missense_Mutation p.S50F 0.24 tolerated(0.69) benign(0.002) TCGA-EE-A2MR-06 7 142176545 142176545 G A TRBV7-4 Missense_Mutation p.S44L 0.21 deleterious(0.02) benign(0.065) TCGA-EE-A2MR-06 7 142206570 142206570 G A TRBV10-2 Silent p.L95L 0.20 TCGA-EE-A2MR-06 7 142334806 142334806 C T TRBV20-1 Silent p.V76V 0.25 TCGA-EE-A2MR-06 7 142458518 142458518 C T PRSS1 Silent p.S51S 0.15 TCGA-EE-A2MR-06 7 142458528 142458528 G A PRSS1 Missense_Mutation p.E55K 0.29 tolerated(0.24) benign(0.002) TCGA-EE-A2MR-06 7 142460757 142460757 C T PRSS1 Silent p.L210L 0.30 TCGA-EE-A2MR-06 7 142460771 142460771 C T PRSS1 Missense_Mutation p.S215F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 142574216 142574216 G A TRPV6 Missense_Mutation p.P236L 0.20 tolerated(0.14) benign(0.055) TCGA-EE-A2MR-06 7 142625246 142625246 C T TRPV5 Silent p.E282E 0.13 TCGA-EE-A2MR-06 7 142641774 142641774 G A KEL Missense_Mutation p.L457F 0.17 deleterious(0) possibly_damaging(0.517) TCGA-EE-A2MR-06 7 142723664 142723664 C T OR9A2 Missense_Mutation p.D186N 0.21 tolerated(0.51) benign(0.021) TCGA-EE-A2MR-06 7 142749564 142749564 A G OR6V1 Missense_Mutation p.I43V 0.06 tolerated(0.06) probably_damaging(0.941) TCGA-EE-A2MR-06 7 142919645 142919645 T C TAS2R40 Silent p.F158F 0.22 TCGA-EE-A2MR-06 7 143049091 143049091 G A CLCN1 3'UTR 0.14 TCGA-EE-A2MR-06 7 143657186 143657186 G A OR2F1 Silent p.G41G 0.22 TCGA-EE-A2MR-06 7 143747773 143747773 C T OR2A5 Silent p.S93S 0.17 TCGA-EE-A2MR-06 7 143771812 143771812 T C OR2A25 Missense_Mutation p.F167S 0.07 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MR-06 7 143771980 143771980 C T OR2A25 Missense_Mutation p.A223V 0.12 deleterious(0.02) benign(0.17) TCGA-EE-A2MR-06 7 143792596 143792596 C T OR2A12 Silent p.T132T 0.09 TCGA-EE-A2MR-06 7 144098438 144098438 C T NOBOX Missense_Mutation p.G182E 0.13 tolerated_low_confidence(0.21) benign(0.043) TCGA-EE-A2MR-06 7 144098959 144098959 C T NOBOX Intron 0.08 TCGA-EE-A2MR-06 7 14613944 14613944 C T DGKB Missense_Mutation p.E556K 0.10 tolerated(0.91) benign(0.297) TCGA-EE-A2MR-06 7 1481878 1481878 G A MICALL2 Missense_Mutation p.P554L 0.07 tolerated(0.72) benign(0.003) TCGA-EE-A2MR-06 7 1481879 1481879 G A MICALL2 Missense_Mutation p.P554S 0.08 tolerated(0.42) benign(0.424) TCGA-EE-A2MR-06 7 1481952 1481952 G A MICALL2 Silent p.S529S 0.07 TCGA-EE-A2MR-06 7 148767689 148767689 G A ZNF786 Silent p.I725I 0.18 TCGA-EE-A2MR-06 7 148802413 148802413 G A ZNF425 Missense_Mutation p.P184S 0.15 tolerated(0.62) benign(0.02) TCGA-EE-A2MR-06 7 1488260 1488260 G A MICALL2 Silent p.S110S 0.07 TCGA-EE-A2MR-06 7 148876611 148876611 C T ZNF398 Silent p.I549I 0.09 TCGA-EE-A2MR-06 7 149502585 149502585 C T SSPO RNA 0.14 TCGA-EE-A2MR-06 7 149521723 149521723 G A SSPO RNA 0.24 TCGA-EE-A2MR-06 7 150164064 150164064 G A GIMAP8 Missense_Mutation p.S93N 0.10 tolerated(0.29) possibly_damaging(0.872) TCGA-EE-A2MR-06 7 150171384 150171384 G A GIMAP8 Missense_Mutation p.G323S 0.11 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2MR-06 7 150325007 150325007 C T GIMAP6 Missense_Mutation p.E227K 0.08 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A2MR-06 7 150417929 150417929 C T GIMAP1 Silent p.A279A 0.17 TCGA-EE-A2MR-06 7 150499303 150499303 G A TMEM176A Missense_Mutation p.V59M 0.09 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 7 150554581 150554581 C T AOC1 Silent p.F341F 0.13 TCGA-EE-A2MR-06 7 150649663 150649663 G A KCNH2 Silent p.I469I 0.18 TCGA-EE-A2MR-06 7 150654410 150654410 C T KCNH2 Missense_Mutation p.R366Q 0.21 deleterious(0.04) probably_damaging(0.973) TCGA-EE-A2MR-06 7 150846137 150846137 C T GBX1 Missense_Mutation p.G211S 0.05 tolerated(0.57) benign(0.122) TCGA-EE-A2MR-06 7 151372707 151372707 G A PRKAG2 Silent p.S161S 0.09 TCGA-EE-A2MR-06 7 151877065 151877065 G A KMT2C Silent p.F2432F 0.14 TCGA-EE-A2MR-06 7 151878414 151878414 C T KMT2C Silent p.Q2177Q 0.13 TCGA-EE-A2MR-06 7 154875986 154875986 G A HTR5A Missense_Mutation p.G288D 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 156480761 156480761 G A LMBR1 Silent p.F450F 0.19 TCGA-EE-A2MR-06 7 156752695 156752695 T C NOM1 Silent p.L487L 0.12 TCGA-EE-A2MR-06 7 157926661 157926661 C T PTPRN2 Missense_Mutation p.D422N 0.14 tolerated(0.31) benign(0.015) TCGA-EE-A2MR-06 7 158590696 158590696 G A ESYT2 Silent p.A196A 0.17 TCGA-EE-A2MR-06 7 158734828 158734828 C T WDR60 Silent p.V997V 0.10 TCGA-EE-A2MR-06 7 158828674 158828674 T A VIPR2 Missense_Mutation p.T260S 0.17 tolerated(0.27) benign(0.078) TCGA-EE-A2MR-06 7 1595055 1595055 C T TMEM184A Silent p.Q22Q 0.15 TCGA-EE-A2MR-06 7 16902253 16902253 C T AGR3 Silent p.E69E 0.22 TCGA-EE-A2MR-06 7 16918164 16918164 C T AGR3 Missense_Mutation p.E27K 0.15 tolerated(0.71) benign(0.004) TCGA-EE-A2MR-06 7 18066487 18066487 C T PRPS1L1 Missense_Mutation p.E307K 0.20 deleterious(0.02) benign(0.07) TCGA-EE-A2MR-06 7 18067039 18067039 G A PRPS1L1 Missense_Mutation p.H123Y 0.24 deleterious(0.01) benign(0.18) TCGA-EE-A2MR-06 7 20418903 20418903 G A ITGB8 Silent p.R206R 0.22 TCGA-EE-A2MR-06 7 20721258 20721258 G A ABCB5 Missense_Mutation p.R613Q 0.14 tolerated(0.27) benign(0.002) TCGA-EE-A2MR-06 7 20824656 20824656 G A SP8 Silent p.T260T 0.10 TCGA-EE-A2MR-06 7 21609847 21609847 C T DNAH11 Missense_Mutation p.P452L 0.19 benign(0.007) TCGA-EE-A2MR-06 7 21827146 21827146 C T DNAH11 Missense_Mutation p.S3297F 0.31 probably_damaging(1) TCGA-EE-A2MR-06 7 21948002 21948002 G A CDCA7L Nonsense_Mutation p.R143* 0.10 TCGA-EE-A2MR-06 7 23825179 23825179 C T STK31 Missense_Mutation p.P744L 0.20 deleterious(0.03) probably_damaging(0.95) TCGA-EE-A2MR-06 7 2473018 2473018 C T CHST12 Silent p.F248F 0.18 TCGA-EE-A2MR-06 7 24749972 24749972 C T DFNA5 Missense_Mutation p.E245K 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A2MR-06 7 24758684 24758684 G A DFNA5 Silent p.I186I 0.25 TCGA-EE-A2MR-06 7 2515561 2515561 C T GRIFIN RNA 0.09 TCGA-EE-A2MR-06 7 25175643 25175643 G A C7orf31 Missense_Mutation p.S574L 0.10 tolerated(0.18) benign(0.009) TCGA-EE-A2MR-06 7 25175867 25175867 G A C7orf31 Silent p.F499F 0.25 TCGA-EE-A2MR-06 7 25182351 25182351 G A C7orf31 Missense_Mutation p.S256L 0.12 tolerated(0.17) benign(0.009) TCGA-EE-A2MR-06 7 2559870 2559870 C T LFNG Silent p.F125F 0.14 TCGA-EE-A2MR-06 7 2564905 2564905 C T LFNG Silent p.S178S 0.15 TCGA-EE-A2MR-06 7 2611206 2611206 C T IQCE Silent p.S59S 0.19 TCGA-EE-A2MR-06 7 27134227 27134227 G A HOXA1 Silent p.R280R 0.23 TCGA-EE-A2MR-06 7 27181643 27181643 C T HOXA5 Silent p.L208L 0.16 TCGA-EE-A2MR-06 7 27194647 27194647 C T HOXA7 Missense_Mutation p.E192K 0.10 tolerated(0.37) unknown(0) TCGA-EE-A2MR-06 7 27238898 27238898 C T HOXA13 Missense_Mutation p.E267K 0.10 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A2MR-06 7 28220125 28220125 G A JAZF1 Silent p.P24P 0.11 TCGA-EE-A2MR-06 7 28527820 28527820 G A CREB5 Missense_Mutation p.E11K 0.05 tolerated(0.87) possibly_damaging(0.549) TCGA-EE-A2MR-06 7 28997066 28997066 G A AC005013.5 5'Flank 0.08 TCGA-EE-A2MR-06 7 2962271 2962271 C T CARD11 Missense_Mutation p.E756K 0.19 tolerated(0.05) benign(0.197) TCGA-EE-A2MR-06 7 2969707 2969707 G A CARD11 Silent p.A524A 0.10 TCGA-EE-A2MR-06 7 2983977 2983977 C T CARD11 Missense_Mutation p.E185K 0.08 deleterious(0) possibly_damaging(0.687) TCGA-EE-A2MR-06 7 30642717 30642717 C T GARS Missense_Mutation p.R213C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.12 tolerated(0.19) benign(0.198) TCGA-EE-A2MR-06 7 30951791 30951791 C T AQP1 Silent p.I89I 0.10 TCGA-EE-A2MR-06 7 31120235 31120235 G A ADCYAP1R1 Silent p.E91E 0.15 TCGA-EE-A2MR-06 7 31378319 31378319 G A NEUROD6 Silent p.F188F 0.09 TCGA-EE-A2MR-06 7 31378687 31378687 C T NEUROD6 Missense_Mutation p.E66K 0.12 tolerated(0.66) possibly_damaging(0.636) TCGA-EE-A2MR-06 7 31793022 31793022 G A PDE1C Silent p.I762I 0.08 TCGA-EE-A2MR-06 7 31862716 31862716 C T PDE1C Missense_Mutation p.R578Q 0.31 deleterious(0) possibly_damaging(0.895) TCGA-EE-A2MR-06 7 32209516 32209516 C T PDE1C Silent p.G63G 0.18 TCGA-EE-A2MR-06 7 33397598 33397598 C T BBS9 Missense_Mutation p.L562F 0.25 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 7 33427661 33427661 C T BBS9 Missense_Mutation p.R674W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 34698082 34698082 G A NPSR1 Missense_Mutation p.D20N 0.12 tolerated(0.08) benign(0.031) TCGA-EE-A2MR-06 7 34874044 34874044 C T NPSR1 Silent p.T243T 0.19 TCGA-EE-A2MR-06 7 36396945 36396945 G A KIAA0895 Missense_Mutation p.R145C 0.17 deleterious_low_confidence(0.04) benign(0.006) TCGA-EE-A2MR-06 7 36459083 36459083 C T ANLN Missense_Mutation p.P622S 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A2MR-06 7 36580017 36580017 G A AOAH Missense_Mutation p.S405F 0.17 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MR-06 7 3681648 3681648 G A SDK1 Silent p.A208A 0.12 TCGA-EE-A2MR-06 7 36910047 36910047 C T ELMO1 Missense_Mutation p.G619E 0.13 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MR-06 7 37172795 37172795 C T ELMO1 Silent p.G377G 0.16 TCGA-EE-A2MR-06 7 37252981 37252981 G A ELMO1 Silent p.L305L 0.14 TCGA-EE-A2MR-06 7 38370126 38370126 C T TRGV8 Missense_Mutation p.E58K 0.11 tolerated(0.08) possibly_damaging(0.734) TCGA-EE-A2MR-06 7 38402741 38402741 C T TRGV2 Silent p.T26T 0.32 TCGA-EE-A2MR-06 7 38948800 38948800 G A VPS41 5'UTR 0.09 TCGA-EE-A2MR-06 7 4051787 4051787 G A SDK1 Silent p.R780R 0.09 TCGA-EE-A2MR-06 7 41739884 41739884 C T INHBA Missense_Mutation p.S30N 0.07 tolerated(0.13) benign(0.149) TCGA-EE-A2MR-06 7 42005077 42005077 G A GLI3 Silent p.V1198V 0.09 TCGA-EE-A2MR-06 7 42005181 42005181 C T GLI3 Missense_Mutation p.E1164K 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MR-06 7 42012094 42012094 G A GLI3 Missense_Mutation p.R649W 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 4260871 4260871 G A SDK1 Missense_Mutation p.G1901E 0.18 tolerated(0.06) possibly_damaging(0.858) TCGA-EE-A2MR-06 7 4304796 4304796 C T SDK1 Missense_Mutation p.S2141F 0.18 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 7 43484986 43484986 G A HECW1 Missense_Mutation p.E739K 0.13 deleterious_low_confidence(0.02) benign(0.212) TCGA-EE-A2MR-06 7 43827616 43827616 C T BLVRA Silent p.F42F 0.23 TCGA-EE-A2MR-06 7 44189425 44189425 C T GCK Missense_Mutation p.D206N 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 44190569 44190569 C T GCK Missense_Mutation p.E158K 0.05 tolerated(0.63) possibly_damaging(0.888) TCGA-EE-A2MR-06 7 44191958 44191958 C T GCK Missense_Mutation p.G93E 0.06 tolerated(0.52) probably_damaging(1) TCGA-EE-A2MR-06 7 44578439 44578439 C T NPC1L1 Silent p.K519K 0.10 TCGA-EE-A2MR-06 7 44605609 44605609 G A DDX56 Missense_Mutation p.P546S 0.09 tolerated_low_confidence(0.06) benign(0.004) TCGA-EE-A2MR-06 7 44612258 44612258 G A DDX56 Missense_Mutation p.R157C 0.10 deleterious(0.01) benign(0.009) TCGA-EE-A2MR-06 7 45148715 45148715 G A TBRG4 Missense_Mutation p.S41F 0.25 tolerated(0.2) benign(0.009) TCGA-EE-A2MR-06 7 45222867 45222867 C T RAMP3 Silent p.F101F 0.18 TCGA-EE-A2MR-06 7 45222924 45222924 C T RAMP3 Silent p.I120I 0.22 TCGA-EE-A2MR-06 7 45699681 45699681 G A ADCY1 Missense_Mutation p.G450R 0.13 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 7 45748058 45748058 G A ADCY1 Missense_Mutation p.R976Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 7 45931652 45931652 G A IGFBP1 Missense_Mutation p.S214N 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2MR-06 7 4780485 4780485 C T FOXK1 Missense_Mutation p.P193S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 47925290 47925290 G A PKD1L1 Missense_Mutation p.L1067F 0.11 tolerated(0.64) benign(0.01) TCGA-EE-A2MR-06 7 48068524 48068524 T A SUN3 Missense_Mutation p.K4N 0.11 tolerated_low_confidence(0.06) benign(0.036) TCGA-EE-A2MR-06 7 48081078 48081078 C T C7orf57 Missense_Mutation p.S68L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 4820812 4820812 C T AP5Z1 Silent p.I16I 0.12 TCGA-EE-A2MR-06 7 48267003 48267003 C T ABCA13 Missense_Mutation p.L205F 0.13 benign(0.003) TCGA-EE-A2MR-06 7 48280559 48280559 G A ABCA13 Silent p.E386E 0.22 TCGA-EE-A2MR-06 7 48311534 48311534 C T ABCA13 Silent p.F757F 0.35 TCGA-EE-A2MR-06 7 48349601 48349601 C T ABCA13 Missense_Mutation p.H3127Y 0.10 benign(0.069) TCGA-EE-A2MR-06 7 48556384 48556384 C T ABCA13 Silent p.F4568F 0.09 TCGA-EE-A2MR-06 7 50450371 50450371 G A IKZF1 Silent p.R185R 0.17 TCGA-EE-A2MR-06 7 50537852 50537852 C T DDC Silent p.L353L 0.25 TCGA-EE-A2MR-06 7 50563091 50563091 G A DDC Missense_Mutation p.P301S 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-EE-A2MR-06 7 50596996 50596996 C T DDC Silent p.R160R 0.09 TCGA-EE-A2MR-06 7 50596997 50596997 C T DDC Missense_Mutation p.R160Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 7 50685828 50685828 G A GRB10 Silent p.F262F 0.21 TCGA-EE-A2MR-06 7 5104249 5104249 C T RBAK Missense_Mutation p.L388F 0.11 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 7 5112727 5112727 G A RBAK-RBAKDN 3'UTR 0.10 TCGA-EE-A2MR-06 7 53103926 53103926 G A POM121L12 Missense_Mutation p.G188R 0.12 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A2MR-06 7 53103927 53103927 G A POM121L12 Missense_Mutation p.G188E 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A2MR-06 7 53103997 53103997 G A POM121L12 Silent p.Q211Q 0.16 TCGA-EE-A2MR-06 7 55229227 55229227 C T EGFR Missense_Mutation p.P512S 0.09 tolerated(0.97) benign(0) TCGA-EE-A2MR-06 7 5541075 5541075 C T FBXL18 Silent p.E275E 0.14 TCGA-EE-A2MR-06 7 55914312 55914312 G A SEPT14 Missense_Mutation p.R25C 0.16 deleterious(0.01) benign(0.064) TCGA-EE-A2MR-06 7 6205193 6205193 C T CYTH3 Missense_Mutation p.E319K 0.22 tolerated(0.1) benign(0.053) TCGA-EE-A2MR-06 7 65551587 65551587 C T ASL Silent p.L154L 0.09 TCGA-EE-A2MR-06 7 70255385 70255385 C T AUTS2 Silent p.F1061F 0.17 TCGA-EE-A2MR-06 7 70853368 70853368 G A WBSCR17 Silent p.V190V 0.09 TCGA-EE-A2MR-06 7 71275385 71275385 G A CALN1 Silent p.I198I 0.11 TCGA-EE-A2MR-06 7 72657514 72657514 C T GTF2IRD2P1 RNA 0.09 TCGA-EE-A2MR-06 7 72657540 72657540 C T GTF2IRD2P1 RNA 0.11 TCGA-EE-A2MR-06 7 72658311 72658311 C A GTF2IRD2P1 RNA 0.10 TCGA-EE-A2MR-06 7 72658508 72658508 G A GTF2IRD2P1 RNA 0.09 TCGA-EE-A2MR-06 7 72717957 72717957 G A NSUN5 Silent p.F337F 0.26 TCGA-EE-A2MR-06 7 72892254 72892254 G A BAZ1B Missense_Mutation p.R513C 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 7 72892855 72892855 G A BAZ1B Silent p.S312S 0.11 TCGA-EE-A2MR-06 7 73279355 73279355 C T WBSCR28 Silent p.F35F 0.09 TCGA-EE-A2MR-06 7 73731909 73731909 C T CLIP2 Silent p.G11G 0.15 TCGA-EE-A2MR-06 7 73933740 73933740 C T GTF2IRD1 Missense_Mutation p.P235S 0.18 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A2MR-06 7 750981 750981 G A PRKAR1B Silent p.F54F 0.23 TCGA-EE-A2MR-06 7 75182875 75182875 G A HIP1 Silent p.A724A 0.20 TCGA-EE-A2MR-06 7 76054470 76054470 G A ZP3 Silent p.G63G 0.15 TCGA-EE-A2MR-06 7 76111857 76111857 C T DTX2 Missense_Mutation p.P101S 0.17 tolerated(0.19) benign(0.005) TCGA-EE-A2MR-06 7 7612821 7612821 C T MIOS Missense_Mutation p.R239C 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2MR-06 7 76940676 76940676 C T GSAP Silent p.%3D 0.12 TCGA-EE-A2MR-06 7 76990180 76990180 C T GSAP Missense_Mutation p.G330R 0.10 tolerated(0.27) benign(0.286) TCGA-EE-A2MR-06 7 76991953 76991953 G T GSAP Missense_Mutation p.P299Q 0.20 tolerated(0.48) benign(0.028) TCGA-EE-A2MR-06 7 77973170 77973170 C T MAGI2 Missense_Mutation p.E445K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 7 79082546 79082546 C T MAGI2 Missense_Mutation p.E31K 0.16 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A2MR-06 7 82451790 82451790 G A PCLO Intron 0.08 TCGA-EE-A2MR-06 7 82545811 82545811 G A PCLO Missense_Mutation p.R3831C 0.45 unknown(0) TCGA-EE-A2MR-06 7 82595196 82595196 G A PCLO Missense_Mutation p.P1303L 0.20 unknown(0) TCGA-EE-A2MR-06 7 82764666 82764666 G A PCLO Missense_Mutation p.P734S 0.17 unknown(0) TCGA-EE-A2MR-06 7 86415789 86415789 C T GRM3 Silent p.I227I 0.22 TCGA-EE-A2MR-06 7 87138735 87138735 G A ABCB1 Silent p.I1115I 0.11 TCGA-EE-A2MR-06 7 87170678 87170678 G A ABCB1 Missense_Mutation p.L772F 0.17 tolerated(0.19) benign(0.018) TCGA-EE-A2MR-06 7 883119 883119 C T SUN1 Missense_Mutation p.P207L 0.04 tolerated(0.14) benign(0.005) TCGA-EE-A2MR-06 7 91503562 91503562 G A MTERF Silent p.F182F 0.14 TCGA-EE-A2MR-06 7 92760565 92760565 C T SAMD9L Missense_Mutation p.E1574K 0.30 tolerated(0.25) benign(0.096) TCGA-EE-A2MR-06 7 92869203 92869203 C T CCDC132 Missense_Mutation p.L20F 0.13 tolerated_low_confidence(0.63) benign(0) TCGA-EE-A2MR-06 7 94033889 94033889 C T COL1A2 Missense_Mutation p.P101S 0.19 unknown(0) TCGA-EE-A2MR-06 7 94034521 94034521 G A COL1A2 Missense_Mutation p.G148E 0.29 unknown(0) TCGA-EE-A2MR-06 7 94054921 94054921 G A COL1A2 Splice_Site p.X928_splice 0.13 TCGA-EE-A2MR-06 7 96339193 96339193 G A SHFM1 5'UTR 0.21 TCGA-EE-A2MR-06 7 97770803 97770803 C T LMTK2 Missense_Mutation p.S109L 0.09 deleterious(0.01) possibly_damaging(0.589) TCGA-EE-A2MR-06 7 97821733 97821733 C T LMTK2 Silent p.F652F 0.21 TCGA-EE-A2MR-06 7 97822641 97822641 C T LMTK2 Missense_Mutation p.S955F 0.11 tolerated(0.68) benign(0.041) TCGA-EE-A2MR-06 7 97833005 97833005 C T LMTK2 Silent p.S1409S 0.22 TCGA-EE-A2MR-06 7 98445812 98445812 C T TMEM130 Missense_Mutation p.G392E 0.14 tolerated(0.57) benign(0.101) TCGA-EE-A2MR-06 7 98576467 98576467 C T TRRAP Silent p.L2851L 0.15 TCGA-EE-A2MR-06 7 98608764 98608764 C T TRRAP Silent p.A3662A 0.16 TCGA-EE-A2MR-06 7 98984364 98984364 A G ARPC1B Missense_Mutation p.K41E 0.14 tolerated(0.8) benign(0.017) TCGA-EE-A2MR-06 7 99627481 99627481 C T ZKSCAN1 Intron 0.17 TCGA-EE-A2MR-06 7 99688740 99688740 G A COPS6 Missense_Mutation p.R205Q 0.21 tolerated(0.06) possibly_damaging(0.899) TCGA-EE-A2MR-06 7 99808770 99808770 G A STAG3 Missense_Mutation p.M1125I 0.11 tolerated(0.21) benign(0) TCGA-EE-A2MR-06 7 99808772 99808772 A T STAG3 Missense_Mutation p.E1126V 0.11 tolerated(0.08) benign(0.003) TCGA-EE-A2MR-06 8 103572926 103572926 C T ODF1 Silent p.S189S 0.12 TCGA-EE-A2MR-06 8 103663505 103663505 G A KLF10 Missense_Mutation p.P352L 0.10 deleterious(0) benign(0.037) TCGA-EE-A2MR-06 8 10387202 10387202 G A PRSS55 Missense_Mutation p.E114K 0.11 tolerated(0.11) benign(0.079) TCGA-EE-A2MR-06 8 10465046 10465046 C T RP1L1 Missense_Mutation p.E2188K 0.07 unknown(0) TCGA-EE-A2MR-06 8 10466082 10466082 C T RP1L1 Silent p.G1842G 0.10 TCGA-EE-A2MR-06 8 10467317 10467317 C T RP1L1 Missense_Mutation p.E1431K 0.06 unknown(0) TCGA-EE-A2MR-06 8 10470177 10470177 C T RP1L1 Silent p.E477E 0.10 TCGA-EE-A2MR-06 8 10782217 10782217 G A XKR6 Silent p.F296F 0.12 TCGA-EE-A2MR-06 8 110510693 110510693 C T PKHD1L1 Silent p.S3534S 0.16 TCGA-EE-A2MR-06 8 110510796 110510796 C T PKHD1L1 Missense_Mutation p.P3569S 0.15 tolerated(0.17) benign(0.008) TCGA-EE-A2MR-06 8 11157626 11157626 C T MTMR9 Missense_Mutation p.P129L 0.12 tolerated(0.35) benign(0.008) TCGA-EE-A2MR-06 8 11282031 11282031 C T FAM167A Missense_Mutation p.D166N 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 8 113504765 113504765 C T CSMD3 Missense_Mutation p.G1744E 0.09 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 8 11616009 11616009 C T GATA4 3'UTR 0.11 TCGA-EE-A2MR-06 8 11683548 11683552 GCTGG - FDFT1 Frame_Shift_Del p.L178Rfs*14 0.11 TCGA-EE-A2MR-06 8 11696131 11696131 C T FDFT1 3'UTR 0.19 TCGA-EE-A2MR-06 8 119936933 119936933 G A TNFRSF11B Missense_Mutation p.R296C 0.18 tolerated(0.06) benign(0.01) TCGA-EE-A2MR-06 8 11996013 11996013 C T USP17L2 Missense_Mutation p.G86E 0.10 deleterious(0.02) possibly_damaging(0.87) TCGA-EE-A2MR-06 8 123964007 123964007 C T ZHX2 Missense_Mutation p.S86F 0.10 deleterious(0) possibly_damaging(0.871) TCGA-EE-A2MR-06 8 123965554 123965554 C T ZHX2 Nonsense_Mutation p.Q602* 0.10 TCGA-EE-A2MR-06 8 125025752 125025752 G A FER1L6 Missense_Mutation p.D635N 0.33 tolerated(0.06) benign(0.005) TCGA-EE-A2MR-06 8 126056250 126056250 G A KIAA0196 Silent p.P918P 0.29 TCGA-EE-A2MR-06 8 126379116 126379116 C T NSMCE2 Missense_Mutation p.H245Y 0.08 tolerated(0.1) benign(0.099) TCGA-EE-A2MR-06 8 131104327 131104327 G A ASAP1 Silent p.L822L 0.09 TCGA-EE-A2MR-06 8 131922058 131922058 G A ADCY8 Silent p.S512S 0.10 TCGA-EE-A2MR-06 8 133142181 133142181 C T KCNQ3 Silent p.R649R 0.12 TCGA-EE-A2MR-06 8 133153425 133153425 G A KCNQ3 Silent p.F472F 0.10 TCGA-EE-A2MR-06 8 133920583 133920583 C T TG Nonsense_Mutation p.Q1334* 0.14 TCGA-EE-A2MR-06 8 133948005 133948005 G A TG Missense_Mutation p.R1646Q 0.08 tolerated(1) benign(0) TCGA-EE-A2MR-06 8 134063089 134063089 G A SLA Nonsense_Mutation p.R85* 0.16 TCGA-EE-A2MR-06 8 134233036 134233036 G A WISP1 Missense_Mutation p.D188N 0.13 tolerated(0.21) benign(0.015) TCGA-EE-A2MR-06 8 134258871 134258871 G A NDRG1 Silent p.T281T 0.16 TCGA-EE-A2MR-06 8 134474168 134474168 G A ST3GAL1 Missense_Mutation p.P267S 0.09 probably_damaging(1) TCGA-EE-A2MR-06 8 135613905 135613905 G A ZFAT Missense_Mutation p.P686L 0.12 tolerated(0.07) benign(0.002) TCGA-EE-A2MR-06 8 139151308 139151308 G A FAM135B Silent p.S1274S 0.09 TCGA-EE-A2MR-06 8 139163511 139163511 C T FAM135B Silent p.Q1069Q 0.11 TCGA-EE-A2MR-06 8 139164748 139164748 G A FAM135B Missense_Mutation p.S657F 0.13 tolerated(0.52) benign(0.007) TCGA-EE-A2MR-06 8 139380227 139380227 G A FAM135B 5'UTR 0.15 TCGA-EE-A2MR-06 8 139611123 139611123 C T COL22A1 Missense_Mutation p.G1402S 0.14 unknown(0) TCGA-EE-A2MR-06 8 139638484 139638484 C T COL22A1 Silent p.G1222G 0.21 TCGA-EE-A2MR-06 8 139793202 139793202 G A COL22A1 Missense_Mutation p.P540S 0.07 unknown(0) TCGA-EE-A2MR-06 8 139890033 139890033 G A COL22A1 Silent p.I206I 0.18 TCGA-EE-A2MR-06 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.12 tolerated(0.06) benign(0.052) TCGA-EE-A2MR-06 8 140922528 140922528 C T TRAPPC9 Missense_Mutation p.D1041N 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2MR-06 8 142161840 142161840 C T DENND3 Silent p.F246F 0.17 TCGA-EE-A2MR-06 8 142176316 142176316 G A DENND3 Silent p.R447R 0.09 TCGA-EE-A2MR-06 8 142200475 142200475 G A DENND3 Missense_Mutation p.G1033D 0.24 tolerated(0.72) benign(0.005) TCGA-EE-A2MR-06 8 142367603 142367603 G A GPR20 Missense_Mutation p.L141F 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 8 143845972 143845972 C T LYNX1 3'UTR 0.20 TCGA-EE-A2MR-06 8 143999137 143999137 G A CYP11B2 Silent p.A40A 0.15 TCGA-EE-A2MR-06 8 144398199 144398199 G A TOP1MT Silent p.F476F 0.18 TCGA-EE-A2MR-06 8 144511634 144511634 C T MAFA Missense_Mutation p.E315K 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 8 144641705 144641705 C T GSDMD Missense_Mutation p.P67L 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 8 144657673 144657673 G A NAPRT1 Missense_Mutation p.P404L 0.14 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MR-06 8 144803199 144803199 G A MAPK15 Missense_Mutation p.R316Q 0.17 deleterious(0.02) possibly_damaging(0.483) TCGA-EE-A2MR-06 8 144804460 144804460 C T MAPK15 3'UTR 0.27 TCGA-EE-A2MR-06 8 144893205 144893205 G A SCRIB Missense_Mutation p.L382F 0.18 probably_damaging(0.999) TCGA-EE-A2MR-06 8 144919435 144919435 G A NRBP2 Silent p.F371F 0.21 TCGA-EE-A2MR-06 8 144945117 144945117 C T EPPK1 Missense_Mutation p.D769N 0.10 probably_damaging(0.999) TCGA-EE-A2MR-06 8 144991293 144991293 G A PLEC Silent p.F4369F 0.16 TCGA-EE-A2MR-06 8 145005749 145005749 G A PLEC Missense_Mutation p.R890C 0.27 unknown(0) TCGA-EE-A2MR-06 8 145012849 145012849 G A PLEC Missense_Mutation p.R179C 0.09 unknown(0) TCGA-EE-A2MR-06 8 145649171 145649171 G A VPS28 3'UTR 0.12 TCGA-EE-A2MR-06 8 145695010 145695010 C T KIFC2 Missense_Mutation p.P454S 0.14 deleterious(0) possibly_damaging(0.622) TCGA-EE-A2MR-06 8 146157162 146157162 G A ZNF16 Silent p.I337I 0.12 TCGA-EE-A2MR-06 8 16026032 16026032 C T MSR1 Missense_Mutation p.D189N 0.11 deleterious(0.04) benign(0.111) TCGA-EE-A2MR-06 8 17478672 17478672 G A PDGFRL Missense_Mutation p.D156N 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 8 17491704 17491704 G A PDGFRL Nonsense_Mutation p.W307* 0.13 TCGA-EE-A2MR-06 8 17541980 17541980 G A MTUS1 Missense_Mutation p.P899S 0.09 tolerated(1) benign(0) TCGA-EE-A2MR-06 8 17581265 17581265 A T MTUS1 Missense_Mutation p.L789M 0.09 deleterious(0.01) possibly_damaging(0.865) TCGA-EE-A2MR-06 8 2024297 2024297 C T MYOM2 Silent p.V399V 0.21 TCGA-EE-A2MR-06 8 2033496 2033496 G A MYOM2 Missense_Mutation p.D540N 0.15 deleterious(0) possibly_damaging(0.561) TCGA-EE-A2MR-06 8 2071212 2071212 G A MYOM2 Missense_Mutation p.G1181R 0.12 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MR-06 8 2071213 2071213 G A MYOM2 Missense_Mutation p.G1181E 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A2MR-06 8 21550729 21550729 C T GFRA2 3'UTR 0.19 TCGA-EE-A2MR-06 8 21862530 21862530 C T XPO7 Silent p.F1065F 0.11 TCGA-EE-A2MR-06 8 21958475 21958475 C T FAM160B2 Silent p.I536I 0.19 TCGA-EE-A2MR-06 8 22058818 22058818 C T BMP1 Intron 0.14 TCGA-EE-A2MR-06 8 22069257 22069257 G A BMP1 3'UTR 0.10 TCGA-EE-A2MR-06 8 22105496 22105496 C T POLR3D Silent p.G112G 0.14 TCGA-EE-A2MR-06 8 22173775 22173775 C T PIWIL2 Silent p.I742I 0.10 TCGA-EE-A2MR-06 8 22212977 22212977 G A PIWIL2 Missense_Mutation p.E961K 0.14 deleterious(0.02) possibly_damaging(0.54) TCGA-EE-A2MR-06 8 22960664 22960664 C T TNFRSF10C Silent p.F10F 0.12 TCGA-EE-A2MR-06 8 22974328 22974328 G A TNFRSF10C Silent p.G188G 0.09 TCGA-EE-A2MR-06 8 23004504 23004504 G A TNFRSF10D Missense_Mutation p.S151F 0.06 tolerated(0.09) benign(0.187) TCGA-EE-A2MR-06 8 23049399 23049399 C T TNFRSF10A Silent p.G405G 0.07 TCGA-EE-A2MR-06 8 23299207 23299207 G A ENTPD4 Missense_Mutation p.P253S 0.08 tolerated(0.12) possibly_damaging(0.843) TCGA-EE-A2MR-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 8 24199170 24199170 G A ADAM28 Missense_Mutation p.G577E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 8 24350089 24350089 G A ADAM7 Missense_Mutation p.R545K 0.17 tolerated(0.41) benign(0.002) TCGA-EE-A2MR-06 8 25209303 25209303 C T DOCK5 Silent p.N937N 0.18 TCGA-EE-A2MR-06 8 25209304 25209304 C T DOCK5 Missense_Mutation p.R938W 0.19 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 8 25323740 25323740 C T CDCA2 Missense_Mutation p.S146L 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 8 25715851 25715851 G A EBF2 Silent p.T504T 0.21 TCGA-EE-A2MR-06 8 25897557 25897557 C T EBF2 Missense_Mutation p.E157K 0.16 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MR-06 8 26237320 26237320 G C BNIP3L 5'Flank 0.15 TCGA-EE-A2MR-06 8 26484171 26484171 C T DPYSL2 Missense_Mutation p.R173C 0.13 tolerated(0.1) benign(0.095) TCGA-EE-A2MR-06 8 26501100 26501100 C T DPYSL2 Silent p.S319S 0.16 TCGA-EE-A2MR-06 8 27287662 27287662 G A PTK2B Missense_Mutation p.E202K 0.14 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MR-06 8 27296605 27296605 C T PTK2B Silent p.D567D 0.10 TCGA-EE-A2MR-06 8 27327462 27327462 G A CHRNA2 Missense_Mutation p.P37L 0.10 deleterious_low_confidence(0.02) benign(0) TCGA-EE-A2MR-06 8 27888772 27888772 G A NUGGC Silent p.F632F 0.08 TCGA-EE-A2MR-06 8 28209046 28209046 G A ZNF395 Missense_Mutation p.S400F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 8 29004951 29004951 G A KIF13B Missense_Mutation p.S661L 0.36 deleterious(0.01) possibly_damaging(0.651) TCGA-EE-A2MR-06 8 30437808 30437808 G A GTF2E2 Missense_Mutation p.P250L 0.19 tolerated(0.78) benign(0.009) TCGA-EE-A2MR-06 8 30437809 30437809 G A GTF2E2 Missense_Mutation p.P250S 0.18 tolerated(0.48) benign(0.046) TCGA-EE-A2MR-06 8 30695435 30695435 C T TEX15 Missense_Mutation p.D2406N 0.10 tolerated(0.06) benign(0.091) TCGA-EE-A2MR-06 8 30700988 30700988 G A TEX15 Missense_Mutation p.P1849L 0.09 tolerated(0.08) benign(0.119) TCGA-EE-A2MR-06 8 30702528 30702528 G A TEX15 Nonsense_Mutation p.Q1336* 0.10 TCGA-EE-A2MR-06 8 30706323 30706323 C T TEX15 Missense_Mutation p.E71K 0.09 deleterious(0.02) benign(0.096) TCGA-EE-A2MR-06 8 3224648 3224648 C T CSMD1 Silent p.T1007T 0.33 TCGA-EE-A2MR-06 8 32453481 32453481 G A NRG1 Missense_Mutation p.R79Q 0.19 tolerated(0.19) benign(0.065) TCGA-EE-A2MR-06 8 32505441 32505441 G A NRG1 Intron 0.13 TCGA-EE-A2MR-06 8 32505442 32505442 G A NRG1 Intron 0.13 TCGA-EE-A2MR-06 8 32585531 32585531 C T NRG1 Silent p.F189F 0.13 TCGA-EE-A2MR-06 8 32585532 32585532 T A NRG1 Missense_Mutation p.C190S 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 8 32620836 32620836 C T NRG1 Intron 0.12 TCGA-EE-A2MR-06 8 33416214 33416214 G A RNF122 Missense_Mutation p.P34L 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 8 39442176 39442176 G A ADAM18 Missense_Mutation p.G12E 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2MR-06 8 39780143 39780143 G A IDO1 Silent p.V170V 0.12 TCGA-EE-A2MR-06 8 39821178 39821178 C T IDO2 Missense_Mutation p.P64S 0.21 tolerated(0.05) benign(0.038) TCGA-EE-A2MR-06 8 40011043 40011043 C T C8orf4 5'UTR 0.21 TCGA-EE-A2MR-06 8 41522530 41522530 G A ANK1 Intron 0.18 TCGA-EE-A2MR-06 8 41552702 41552702 C T ANK1 Missense_Mutation p.M1077I 0.08 deleterious(0) benign(0.051) TCGA-EE-A2MR-06 8 41552731 41552731 T G ANK1 Missense_Mutation p.S1068R 0.09 deleterious(0.02) benign(0.236) TCGA-EE-A2MR-06 8 41552765 41552765 G A ANK1 Silent p.S1056S 0.14 TCGA-EE-A2MR-06 8 41572498 41572498 C T ANK1 Missense_Mutation p.G599E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 8 41573208 41573208 G A ANK1 Missense_Mutation p.L555F 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 8 48874166 48874166 C T MCM4 Missense_Mutation p.S54L 0.15 deleterious(0) possibly_damaging(0.815) TCGA-EE-A2MR-06 8 48887386 48887386 C T MCM4 Silent p.A743A 0.12 TCGA-EE-A2MR-06 8 48887387 48887387 C T MCM4 Missense_Mutation p.H744Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 8 53084834 53084834 G A ST18 Missense_Mutation p.S196F 0.17 deleterious(0.04) possibly_damaging(0.482) TCGA-EE-A2MR-06 8 54141920 54141920 G A OPRK1 Silent p.V360V 0.15 TCGA-EE-A2MR-06 8 54791948 54791948 G A RGS20 Missense_Mutation p.R99Q 0.11 tolerated_low_confidence(0.69) benign(0.001) TCGA-EE-A2MR-06 8 55533582 55533582 G A RP1 Missense_Mutation p.G19D 0.10 tolerated(0.07) benign(0.352) TCGA-EE-A2MR-06 8 55540475 55540475 T A RP1 Missense_Mutation p.L1345I 0.11 tolerated(0.13) benign(0.332) TCGA-EE-A2MR-06 8 56699001 56699001 C T TGS1 Missense_Mutation p.P182S 0.16 tolerated(0.83) benign(0) TCGA-EE-A2MR-06 8 56882295 56882295 G A LYN Silent p.L331L 0.09 TCGA-EE-A2MR-06 8 57228585 57228585 C T SDR16C5 Missense_Mutation p.V108I 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 8 61749456 61749456 C T CHD7 Missense_Mutation p.S1357F 0.10 probably_damaging(0.998) TCGA-EE-A2MR-06 8 62370894 62370894 G A CLVS1 Missense_Mutation p.S257N 0.11 tolerated(0.15) possibly_damaging(0.593) TCGA-EE-A2MR-06 8 62465666 62465666 G A ASPH Missense_Mutation p.S517F 0.18 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MR-06 8 65527617 65527617 G A CYP7B1 Silent p.L341L 0.30 TCGA-EE-A2MR-06 8 66534583 66534583 G A ARMC1 Nonsense_Mutation p.R64* 0.09 TCGA-EE-A2MR-06 8 665953 665953 C T ERICH1 Missense_Mutation p.G26E 0.14 tolerated(1) benign(0.005) TCGA-EE-A2MR-06 8 665975 665975 G A ERICH1 Missense_Mutation p.P19S 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 8 66988935 66988935 G A DNAJC5B Missense_Mutation p.D54N 0.11 tolerated(1) benign(0.014) TCGA-EE-A2MR-06 8 68658271 68658271 G A CPA6 Missense_Mutation p.L32F 0.18 tolerated(0.68) possibly_damaging(0.506) TCGA-EE-A2MR-06 8 70476323 70476323 G A SULF1 Missense_Mutation p.R38Q 0.14 deleterious(0) benign(0.266) TCGA-EE-A2MR-06 8 70541910 70541910 G A SULF1 Nonsense_Mutation p.W760* 0.15 TCGA-EE-A2MR-06 8 70964488 70964488 C T PRDM14 Missense_Mutation p.E514K 0.17 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MR-06 8 71128984 71128984 G A NCOA2 5'UTR 0.09 TCGA-EE-A2MR-06 8 72755804 72755804 G A RP11-383H13.1 Silent p.L56L 0.22 TCGA-EE-A2MR-06 8 73848772 73848772 G A KCNB2 Silent p.G394G 0.10 TCGA-EE-A2MR-06 8 73848925 73848925 G A KCNB2 Silent p.R445R 0.18 TCGA-EE-A2MR-06 8 73849871 73849871 C T KCNB2 Missense_Mutation p.P761S 0.08 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MR-06 8 74204120 74204120 G A RPL7 Nonsense_Mutation p.R106* 0.12 TCGA-EE-A2MR-06 8 75157289 75157289 C T JPH1 Silent p.T460T 0.13 TCGA-EE-A2MR-06 8 75227750 75227750 G A JPH1 Missense_Mutation p.S162L 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-EE-A2MR-06 8 76465412 76465412 G A HNF4G Missense_Mutation p.E199K 0.30 deleterious(0.02) possibly_damaging(0.627) TCGA-EE-A2MR-06 8 7717892 7717892 C T SPAG11A Intron 0.12 TCGA-EE-A2MR-06 8 77766120 77766120 C T ZFHX4 Silent p.F2321F 0.13 TCGA-EE-A2MR-06 8 77775626 77775626 C T ZFHX4 Missense_Mutation p.L3226F 0.15 probably_damaging(0.994) TCGA-EE-A2MR-06 8 77895944 77895944 G A PEX2 Silent p.F157F 0.09 TCGA-EE-A2MR-06 8 81733756 81733756 G A ZNF704 Missense_Mutation p.S25F 0.16 tolerated_low_confidence(0.26) benign(0.011) TCGA-EE-A2MR-06 8 81905470 81905470 G A PAG1 5'UTR 0.09 TCGA-EE-A2MR-06 8 8197130 8197130 C T SGK223 Silent p.K726K 0.16 TCGA-EE-A2MR-06 8 86180773 86180773 C T CA13 Missense_Mutation p.P196S 0.11 tolerated(0.48) benign(0.003) TCGA-EE-A2MR-06 8 87151823 87151823 C T ATP6V0D2 Missense_Mutation p.P147L 0.22 tolerated(0.8) benign(0.05) TCGA-EE-A2MR-06 8 87410599 87410599 T A WWP1 Silent p.L121L 0.10 TCGA-EE-A2MR-06 8 87591016 87591016 C T CNGB3 Silent p.P668P 0.19 TCGA-EE-A2MR-06 8 88885275 88885275 C T DCAF4L2 Missense_Mutation p.E309K 0.10 tolerated(0.59) benign(0.012) TCGA-EE-A2MR-06 8 88885348 88885348 G A DCAF4L2 Silent p.F284F 0.20 TCGA-EE-A2MR-06 8 91072412 91072412 C T CALB1 Missense_Mutation p.G259R 0.19 tolerated_low_confidence(0.36) benign(0.387) TCGA-EE-A2MR-06 8 93017384 93017384 G A RUNX1T1 Missense_Mutation p.L245F 0.11 deleterious(0.01) benign(0.379) TCGA-EE-A2MR-06 8 95683691 95683691 G A ESRP1 Missense_Mutation p.R415Q 0.06 deleterious(0.01) possibly_damaging(0.75) TCGA-EE-A2MR-06 8 99961765 99961765 G A OSR2 Silent p.T195T 0.07 TCGA-EE-A2MR-06 9 100204051 100204051 A G TDRD7 Missense_Mutation p.N250S 0.50 tolerated(0.51) probably_damaging(0.996) TCGA-EE-A2MR-06 9 100678503 100678503 C T C9orf156 Missense_Mutation p.R65K 0.27 deleterious(0) benign(0.016) TCGA-EE-A2MR-06 9 100692631 100692631 G A HEMGN Missense_Mutation p.S349F 0.08 deleterious(0.04) possibly_damaging(0.775) TCGA-EE-A2MR-06 9 101340338 101340338 C T GABBR2 Missense_Mutation p.G113E 0.10 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2MR-06 9 101777698 101777698 G A COL15A1 Splice_Site p.X452_splice 0.12 TCGA-EE-A2MR-06 9 102590625 102590625 C T NR4A3 Missense_Mutation p.H112Y 0.35 tolerated(1) benign(0.132) TCGA-EE-A2MR-06 9 103002357 103002357 G A INVS Missense_Mutation p.E211K 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MR-06 9 1056845 1056845 C T DMRT2 Missense_Mutation p.H420Y 0.10 tolerated_low_confidence(0.4) benign(0.418) TCGA-EE-A2MR-06 9 107331704 107331704 C T OR13C8 Silent p.L86L 0.11 TCGA-EE-A2MR-06 9 107332265 107332265 G A OR13C8 Missense_Mutation p.E273K 0.10 tolerated(0.51) benign(0.006) TCGA-EE-A2MR-06 9 109689690 109689690 C T ZNF462 Missense_Mutation p.S1166F 0.16 benign(0.069) TCGA-EE-A2MR-06 9 111938890 111938890 C T EPB41L4B Silent p.E858E 0.11 TCGA-EE-A2MR-06 9 112018715 112018715 C T EPB41L4B Silent p.A266A 0.13 TCGA-EE-A2MR-06 9 112029764 112029764 C T EPB41L4B Silent p.E174E 0.13 TCGA-EE-A2MR-06 9 112963346 112963346 G A C9orf152 Missense_Mutation p.P201L 0.23 tolerated(0.96) benign(0.024) TCGA-EE-A2MR-06 9 112963726 112963726 C T C9orf152 Silent p.S74S 0.10 TCGA-EE-A2MR-06 9 113208209 113208209 C T SVEP1 Missense_Mutation p.M1457I 0.16 probably_damaging(0.909) TCGA-EE-A2MR-06 9 115421564 115421564 G A KIAA1958 Missense_Mutation p.E456K 0.10 tolerated(0.54) possibly_damaging(0.821) TCGA-EE-A2MR-06 9 116044941 116044941 C T PRPF4 Silent p.L137L 0.11 TCGA-EE-A2MR-06 9 116931443 116931443 C T COL27A1 Silent p.P536P 0.15 TCGA-EE-A2MR-06 9 117087345 117087345 G A ORM1 Silent p.T151T 0.22 TCGA-EE-A2MR-06 9 117808 117808 C T FOXD4 Silent p.K104K 0.16 TCGA-EE-A2MR-06 9 118187 118187 G A FOXD4 5'UTR 0.24 TCGA-EE-A2MR-06 9 118949539 118949539 G A PAPPA Silent p.L174L 0.08 TCGA-EE-A2MR-06 9 119626013 119626013 C T ASTN2 Splice_Site p.X579_splice 0.22 TCGA-EE-A2MR-06 9 123676511 123676511 A G TRAF1 Splice_Site p.X98_splice 0.14 TCGA-EE-A2MR-06 9 124988736 124988736 G A LHX6 Missense_Mutation p.S127F 0.15 deleterious(0.02) possibly_damaging(0.865) TCGA-EE-A2MR-06 9 125004171 125004171 G A RBM18 Nonsense_Mutation p.R189* 0.11 TCGA-EE-A2MR-06 9 125289032 125289032 G A OR1N1 Missense_Mutation p.P181S 0.23 deleterious(0.02) benign(0.311) TCGA-EE-A2MR-06 9 125330749 125330749 C T OR1L8 Missense_Mutation p.R3K 0.12 tolerated(0.3) benign(0.003) TCGA-EE-A2MR-06 9 125330750 125330750 T G OR1L8 Silent p.R3R 0.13 TCGA-EE-A2MR-06 9 125424379 125424379 C T OR1L1 Missense_Mutation p.P129S 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MR-06 9 125621201 125621201 G A RC3H2 Missense_Mutation p.P677L 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MR-06 9 126133132 126133132 C T CRB2 Silent p.L600L 0.17 TCGA-EE-A2MR-06 9 126133133 126133133 C T CRB2 Silent p.L601L 0.17 TCGA-EE-A2MR-06 9 126139194 126139194 C T CRB2 Silent p.L1237L 0.18 TCGA-EE-A2MR-06 9 127990199 127990199 C T RABEPK Silent p.T179T 0.20 TCGA-EE-A2MR-06 9 129458637 129458637 C T LMX1B Silent p.F376F 0.16 TCGA-EE-A2MR-06 9 130206785 130206785 G A ZNF79 Missense_Mutation p.R269Q 0.11 deleterious(0) benign(0.046) TCGA-EE-A2MR-06 9 130219603 130219603 C T LRSAM1 Silent p.I61I 0.12 TCGA-EE-A2MR-06 9 133499042 133499042 C T FUBP3 Missense_Mutation p.P307S 0.10 deleterious(0.01) benign(0.121) TCGA-EE-A2MR-06 9 133499043 133499043 C T FUBP3 Missense_Mutation p.P307L 0.09 deleterious(0.02) benign(0.258) TCGA-EE-A2MR-06 9 134459920 134459920 G A RAPGEF1 Silent p.F931F 0.14 TCGA-EE-A2MR-06 9 135201931 135201931 G A SETX Missense_Mutation p.S1685F 0.10 tolerated(0.13) benign(0.133) TCGA-EE-A2MR-06 9 135553482 135553482 C T GTF3C4 Missense_Mutation p.P159L 0.13 tolerated(0.21) benign(0.419) TCGA-EE-A2MR-06 9 135866351 135866351 C T GFI1B Missense_Mutation p.P303S 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 9 135961730 135961730 G A CELP RNA 0.08 TCGA-EE-A2MR-06 9 136403500 136403500 G A ADAMTSL2 Missense_Mutation p.R88K 0.13 tolerated(1) benign(0.006) TCGA-EE-A2MR-06 9 136573491 136573491 G A SARDH Missense_Mutation p.S463F 0.16 deleterious(0) possibly_damaging(0.724) TCGA-EE-A2MR-06 9 137620647 137620647 C T COL5A1 Silent p.V306V 0.17 TCGA-EE-A2MR-06 9 137623452 137623452 C T COL5A1 Silent p.S425S 0.09 TCGA-EE-A2MR-06 9 137648659 137648659 C T COL5A1 Missense_Mutation p.P626S 0.10 probably_damaging(0.997) TCGA-EE-A2MR-06 9 138457276 138457276 G A PAEP Missense_Mutation p.D148N 0.12 tolerated(0.61) probably_damaging(0.968) TCGA-EE-A2MR-06 9 138589431 138589431 C T SOHLH1 Missense_Mutation p.D130N 0.11 tolerated(0.22) benign(0.001) TCGA-EE-A2MR-06 9 138671281 138671281 G A KCNT1 Missense_Mutation p.D936N 0.11 tolerated(0.18) benign(0.088) TCGA-EE-A2MR-06 9 138713690 138713690 G A CAMSAP1 Silent p.Y939Y 0.08 TCGA-EE-A2MR-06 9 138713957 138713957 G A CAMSAP1 Silent p.A850A 0.16 TCGA-EE-A2MR-06 9 139110984 139110984 G A QSOX2 Missense_Mutation p.S283L 0.11 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MR-06 9 139283019 139283019 G A SNAPC4 Silent p.L334L 0.20 TCGA-EE-A2MR-06 9 139292813 139292813 G A SNAPC4 Missense_Mutation p.P23L 0.13 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 9 139341692 139341692 G A SEC16A Silent p.F2228F 0.27 TCGA-EE-A2MR-06 9 139391459 139391459 G A NOTCH1 Silent p.I2244I 0.21 TCGA-EE-A2MR-06 9 139847361 139847361 C T LCN12 Silent p.F44F 0.10 TCGA-EE-A2MR-06 9 139995588 139995588 C T MAN1B1 Missense_Mutation p.L350F 0.08 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MR-06 9 140108292 140108292 C T NDOR1 Silent p.L124L 0.15 TCGA-EE-A2MR-06 9 140637883 140637883 C T EHMT1 Missense_Mutation p.T295I 0.17 tolerated_low_confidence(0.06) benign(0.193) TCGA-EE-A2MR-06 9 2123808 2123808 C T SMARCA2 Silent p.I1284I 0.17 TCGA-EE-A2MR-06 9 21239849 21239849 G A IFNA14 Missense_Mutation p.T29I 0.20 tolerated(0.15) benign(0.223) TCGA-EE-A2MR-06 9 21481691 21481691 C T IFNE Translation_Start_Site p.M1? 0.16 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MR-06 9 21816760 21816760 C T MTAP Silent p.V56V 0.14 TCGA-EE-A2MR-06 9 26978217 26978217 C T IFT74 Missense_Mutation p.P71L 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 9 27157868 27157868 C T TEK Missense_Mutation p.S31F 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MR-06 9 32635292 32635292 C T TAF1L Missense_Mutation p.D96N 0.20 tolerated(0.13) benign(0.423) TCGA-EE-A2MR-06 9 32984776 32984776 G A APTX Missense_Mutation p.T208I 0.20 tolerated(0.14) benign(0.102) TCGA-EE-A2MR-06 9 33060542 33060542 G T SMU1 Missense_Mutation p.P224Q 0.10 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MR-06 9 34490045 34490045 G A DNAI1 Missense_Mutation p.G142R 0.21 tolerated(0.5) benign(0.009) TCGA-EE-A2MR-06 9 35045536 35045536 G A C9orf131 Silent p.G970G 0.10 TCGA-EE-A2MR-06 9 35547857 35547857 C T RUSC2 Silent p.L447L 0.07 TCGA-EE-A2MR-06 9 35650597 35650597 G A SIT1 Silent p.V46V 0.15 TCGA-EE-A2MR-06 9 40773305 40773305 G A ZNF658 Missense_Mutation p.P657L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 9 71532595 71532595 G A PIP5K1B Silent p.K301K 0.17 TCGA-EE-A2MR-06 9 72047482 72047482 G A APBA1 Silent p.I804I 0.26 TCGA-EE-A2MR-06 9 72055996 72055996 G A APBA1 Silent p.I739I 0.14 TCGA-EE-A2MR-06 9 73002723 73002723 C T KLF9 Missense_Mutation p.R235Q 0.10 deleterious(0.01) benign(0.216) TCGA-EE-A2MR-06 9 74319525 74319525 G A TMEM2 Silent p.L1060L 0.11 TCGA-EE-A2MR-06 9 75403355 75403355 G A TMC1 Missense_Mutation p.E329K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 9 77457104 77457104 C T TRPM6 Missense_Mutation p.G103E 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 9 78638651 78638651 C T PCSK5 Intron 0.14 TCGA-EE-A2MR-06 9 78686688 78686688 A T PCSK5 Missense_Mutation p.K256N 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 9 79118281 79118281 G A GCNT1 Silent p.R328R 0.16 TCGA-EE-A2MR-06 9 79323007 79323007 C T PRUNE2 Missense_Mutation p.E1395K 0.22 tolerated(0.17) benign(0.009) TCGA-EE-A2MR-06 9 79520891 79520891 G A PRUNE2 5'UTR 0.14 TCGA-EE-A2MR-06 9 80919828 80919828 C T PSAT1 Silent p.I123I 0.14 TCGA-EE-A2MR-06 9 84608299 84608299 G A SPATA31D1 Missense_Mutation p.E972K 0.19 tolerated(0.1) benign(0.032) TCGA-EE-A2MR-06 9 90497824 90497824 C T SPATA31E1 Silent p.I6I 0.10 TCGA-EE-A2MR-06 9 90535331 90535331 G A SPATA31C1 RNA 0.18 TCGA-EE-A2MR-06 9 90535853 90535853 C T SPATA31C1 RNA 0.06 TCGA-EE-A2MR-06 9 91943605 91943605 C T SECISBP2 Missense_Mutation p.S202F 0.16 tolerated(0.05) probably_damaging(0.938) TCGA-EE-A2MR-06 9 91994326 91994326 C T SEMA4D Missense_Mutation p.E628K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 9 95055768 95055768 G A IARS 5'UTR 0.12 TCGA-EE-A2MR-06 9 95480936 95480936 G A BICD2 Missense_Mutation p.A664V 0.08 tolerated(0.78) benign(0.001) TCGA-EE-A2MR-06 9 95610138 95610138 C T ZNF484 Missense_Mutation p.D313N 0.22 tolerated(0.12) benign(0.081) TCGA-EE-A2MR-06 9 97329621 97329621 C T FBP2 Silent p.L212L 0.14 TCGA-EE-A2MR-06 X 100104391 100104391 C T NOX1 Missense_Mutation p.E441K 0.29 deleterious(0.05) probably_damaging(0.967) TCGA-EE-A2MR-06 X 100182978 100182978 G A XKRX Missense_Mutation p.L106F 0.18 tolerated(0.51) probably_damaging(0.998) TCGA-EE-A2MR-06 X 100612548 100612548 G A BTK Missense_Mutation p.P376S 0.17 deleterious(0.01) possibly_damaging(0.614) TCGA-EE-A2MR-06 X 100871378 100871378 G A ARMCX6 Missense_Mutation p.P78L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 X 100871379 100871379 G A ARMCX6 Missense_Mutation p.P78S 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A2MR-06 X 100911708 100911708 G A ARMCX2 Silent p.S289S 0.17 TCGA-EE-A2MR-06 X 101092552 101092552 G A NXF5 Nonsense_Mutation p.Q332* 0.13 TCGA-EE-A2MR-06 X 101092580 101092580 C T NXF5 Silent p.V322V 0.16 TCGA-EE-A2MR-06 X 101572204 101572204 G A NXF2 Intron 0.18 TCGA-EE-A2MR-06 X 101572328 101572328 C T NXF2 Intron 0.15 TCGA-EE-A2MR-06 X 101576767 101576767 C T NXF2 Silent p.F421F 0.12 TCGA-EE-A2MR-06 X 101911118 101911118 C T GPRASP1 Silent p.A759A 0.17 TCGA-EE-A2MR-06 X 101972234 101972234 C T GPRASP2 Missense_Mutation p.R813C 0.26 deleterious(0) possibly_damaging(0.846) TCGA-EE-A2MR-06 X 102338148 102338148 C T NXF3 Silent p.L198L 0.15 TCGA-EE-A2MR-06 X 103041538 103041538 C T PLP1 Silent p.G112G 0.18 TCGA-EE-A2MR-06 X 103041539 103041539 C T PLP1 Silent p.L113L 0.18 TCGA-EE-A2MR-06 X 103434387 103434387 C T FAM199X Silent p.F365F 0.28 TCGA-EE-A2MR-06 X 104463627 104463627 C T TEX13A 3'UTR 0.15 TCGA-EE-A2MR-06 X 106083983 106083983 G A TBC1D8B Missense_Mutation p.E530K 0.22 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2MR-06 X 106111664 106111664 G A TBC1D8B Missense_Mutation p.E924K 0.21 tolerated(0.36) benign(0.002) TCGA-EE-A2MR-06 X 106171843 106171843 G A CLDN2 Missense_Mutation p.G129S 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MR-06 X 106845243 106845243 G A FRMPD3 Missense_Mutation p.R1358K 0.19 tolerated_low_confidence(0.24) benign(0.01) TCGA-EE-A2MR-06 X 107415744 107415744 C T COL4A6 Missense_Mutation p.G1054R 0.17 probably_damaging(1) TCGA-EE-A2MR-06 X 107433709 107433709 C T COL4A6 Missense_Mutation p.E448K 0.31 benign(0.001) TCGA-EE-A2MR-06 X 107436862 107436862 G A COL4A6 Silent p.I357I 0.11 TCGA-EE-A2MR-06 X 107811878 107811878 G A COL4A5 Missense_Mutation p.G99E 0.24 unknown(0) TCGA-EE-A2MR-06 X 107977127 107977127 C T IRS4 Silent p.R816R 0.08 TCGA-EE-A2MR-06 X 108631794 108631794 G A GUCY2F Silent p.I960I 0.29 TCGA-EE-A2MR-06 X 108719109 108719109 C T GUCY2F Silent p.R19R 0.42 TCGA-EE-A2MR-06 X 109416618 109416618 C T TMEM164 Missense_Mutation p.A278V 0.22 tolerated(0.3) benign(0.001) TCGA-EE-A2MR-06 X 109695015 109695015 G A RGAG1 Silent p.V390V 0.10 TCGA-EE-A2MR-06 X 109696104 109696104 G A RGAG1 Silent p.V753V 0.27 TCGA-EE-A2MR-06 X 109698506 109698506 G A RGAG1 Missense_Mutation p.G1375E 0.24 deleterious_low_confidence(0.01) benign(0.242) TCGA-EE-A2MR-06 X 110496295 110496295 G A CAPN6 Silent p.F149F 0.45 TCGA-EE-A2MR-06 X 110970077 110970077 C T ALG13 Silent p.F590F 0.36 TCGA-EE-A2MR-06 X 111090415 111090415 C T TRPC5 Missense_Mutation p.E543K 0.13 tolerated(0.2) possibly_damaging(0.733) TCGA-EE-A2MR-06 X 11166831 11166831 G A ARHGAP6 Intron 0.26 TCGA-EE-A2MR-06 X 111874685 111874685 G A LHFPL1 Missense_Mutation p.S209F 0.17 deleterious_low_confidence(0) benign(0.446) TCGA-EE-A2MR-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.25 TCGA-EE-A2MR-06 X 117788729 117788729 C T DOCK11 Silent p.T1620T 0.21 TCGA-EE-A2MR-06 X 118228050 118228050 G A KIAA1210 Missense_Mutation p.L426F 0.56 tolerated(0.11) benign(0.201) TCGA-EE-A2MR-06 X 118783993 118783993 G A SEPT6 Silent p.I199I 0.30 TCGA-EE-A2MR-06 X 119005831 119005831 C T NDUFA1 5'UTR 0.28 TCGA-EE-A2MR-06 X 119410842 119410842 G A TMEM255A Silent p.I215I 0.39 TCGA-EE-A2MR-06 X 120009409 120009409 C T CT47B1 Missense_Mutation p.G39D 0.10 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A2MR-06 X 123164887 123164887 C T STAG2 Missense_Mutation p.P67L 0.14 tolerated(0.72) benign(0.003) TCGA-EE-A2MR-06 X 123539081 123539081 C T TENM1 Missense_Mutation p.G1731S 0.38 deleterious(0.02) benign(0.26) TCGA-EE-A2MR-06 X 123657239 123657239 C T TENM1 Missense_Mutation p.R1003K 0.17 tolerated(0.65) benign(0.004) TCGA-EE-A2MR-06 X 123775763 123775763 C T TENM1 Missense_Mutation p.G652E 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 X 125685274 125685274 C T DCAF12L1 Missense_Mutation p.E440K 0.26 tolerated(0.17) possibly_damaging(0.881) TCGA-EE-A2MR-06 X 125685344 125685344 G A DCAF12L1 Silent p.F416F 0.09 TCGA-EE-A2MR-06 X 125685857 125685857 G A DCAF12L1 Silent p.I245I 0.16 TCGA-EE-A2MR-06 X 125686004 125686004 C T DCAF12L1 Nonsense_Mutation p.W196* 0.41 TCGA-EE-A2MR-06 X 12735936 12735936 G A FRMPD4 Missense_Mutation p.M997I 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-EE-A2MR-06 X 12735962 12735962 C T FRMPD4 Missense_Mutation p.S1006L 0.14 deleterious_low_confidence(0.04) probably_damaging(0.941) TCGA-EE-A2MR-06 X 12838920 12838920 C T PRPS2 Nonsense_Mutation p.Q291* 0.18 TCGA-EE-A2MR-06 X 128901581 128901581 C T XPNPEP2 Silent p.Y581Y 0.13 TCGA-EE-A2MR-06 X 12904461 12904461 C T TLR7 Silent p.P278P 0.11 TCGA-EE-A2MR-06 X 129147270 129147270 C T BCORL1 Silent p.F174F 0.41 TCGA-EE-A2MR-06 X 129147377 129147377 C T BCORL1 Missense_Mutation p.S210L 0.11 unknown(0) TCGA-EE-A2MR-06 X 129629498 129629498 G A RP1-274L7.1 Intron 0.12 TCGA-EE-A2MR-06 X 129629839 129629839 G A RP1-274L7.1 Intron 0.13 TCGA-EE-A2MR-06 X 131212472 131212472 G A FRMD7 Missense_Mutation p.P525S 0.25 tolerated(0.13) benign(0.011) TCGA-EE-A2MR-06 X 1317531 1317531 C T CRLF2 Silent p.E178E 0.18 TCGA-EE-A2MR-06 X 134988265 134988265 C T SAGE1 Silent p.P179P 0.20 TCGA-EE-A2MR-06 X 135762891 135762891 G A ARHGEF6 Missense_Mutation p.S568F 0.25 deleterious(0.04) possibly_damaging(0.886) TCGA-EE-A2MR-06 X 135762906 135762906 G A ARHGEF6 Missense_Mutation p.S563L 0.29 tolerated(0.5) benign(0.066) TCGA-EE-A2MR-06 X 135770135 135770135 G A ARHGEF6 Missense_Mutation p.H401Y 0.32 tolerated(0.2) benign(0.036) TCGA-EE-A2MR-06 X 13651119 13651119 G A EGFL6 Missense_Mutation p.E524K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MR-06 X 13762615 13762615 C T OFD1 Missense_Mutation p.S165L 0.27 tolerated(0.12) benign(0.023) TCGA-EE-A2MR-06 X 138633334 138633334 G A F9 Missense_Mutation p.D212N 0.21 tolerated(0.12) benign(0.011) TCGA-EE-A2MR-06 X 140785708 140785708 C T SPANXD Missense_Mutation p.D70N 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MR-06 X 140785712 140785712 C T SPANXD Silent p.V68V 0.10 TCGA-EE-A2MR-06 X 140785745 140785745 C T SPANXD Silent p.R57R 0.08 TCGA-EE-A2MR-06 X 140785748 140785748 C T SPANXD Silent p.R56R 0.21 TCGA-EE-A2MR-06 X 140984964 140984964 A C MAGEC3 Missense_Mutation p.K474Q 0.15 deleterious(0.03) probably_damaging(0.933) TCGA-EE-A2MR-06 X 140994567 140994567 C T MAGEC1 Silent p.F459F 0.22 TCGA-EE-A2MR-06 X 140994575 140994575 C T MAGEC1 Missense_Mutation p.S462F 0.12 tolerated_low_confidence(0.07) possibly_damaging(0.485) TCGA-EE-A2MR-06 X 140994842 140994842 G A MAGEC1 Missense_Mutation p.S551N 0.30 deleterious_low_confidence(0) benign(0.213) TCGA-EE-A2MR-06 X 140995274 140995274 C A MAGEC1 Missense_Mutation p.P695H 0.14 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-EE-A2MR-06 X 140996141 140996141 C T MAGEC1 Missense_Mutation p.S984F 0.10 deleterious(0.04) unknown(0) TCGA-EE-A2MR-06 X 141290767 141290767 G A MAGEC2 Missense_Mutation p.A336V 0.17 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 X 141290969 141290969 C T MAGEC2 Missense_Mutation p.E269K 0.11 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A2MR-06 X 141291239 141291239 G A MAGEC2 Missense_Mutation p.P179S 0.26 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A2MR-06 X 142596789 142596789 C T SPANXN3 Missense_Mutation p.G94E 0.25 tolerated(0.19) possibly_damaging(0.765) TCGA-EE-A2MR-06 X 142717897 142717897 G A SLITRK4 Missense_Mutation p.P343L 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 X 142718463 142718463 G A SLITRK4 Silent p.L154L 0.35 TCGA-EE-A2MR-06 X 1428425 1428425 G A CSF2RA 3'UTR 0.08 TCGA-EE-A2MR-06 X 144905618 144905618 G A SLITRK2 Missense_Mutation p.E559K 0.14 tolerated(0.93) benign(0.017) TCGA-EE-A2MR-06 X 147744125 147744125 G A AFF2 Missense_Mutation p.D293N 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MR-06 X 148037297 148037297 G A AFF2 Silent p.T574T 0.09 TCGA-EE-A2MR-06 X 149937520 149937520 G A CD99L2 Missense_Mutation p.P259L 0.24 deleterious_low_confidence(0.01) benign(0.097) TCGA-EE-A2MR-06 X 1501325 1501325 G A IL3RA Silent p.L368L 0.07 TCGA-EE-A2MR-06 X 150349105 150349105 C T GPR50 Silent p.D350D 0.18 TCGA-EE-A2MR-06 X 150832764 150832764 G A PASD1 Missense_Mutation p.D339N 0.21 tolerated(0.2) probably_damaging(0.986) TCGA-EE-A2MR-06 X 150839663 150839663 C T PASD1 Missense_Mutation p.L409F 0.29 tolerated(0.07) benign(0.412) TCGA-EE-A2MR-06 X 150889963 150889963 C T FATE1 Missense_Mutation p.H111Y 0.39 tolerated(0.98) benign(0.193) TCGA-EE-A2MR-06 X 151091960 151091960 C T MAGEA4 5'UTR 0.09 TCGA-EE-A2MR-06 X 151123310 151123310 C T GABRE Missense_Mutation p.D462N 0.33 tolerated(0.3) benign(0.015) TCGA-EE-A2MR-06 X 151284173 151284173 C T RP11-1007I13.4 RNA 0.32 TCGA-EE-A2MR-06 X 151304105 151304105 C T MAGEA10 5'UTR 0.21 TCGA-EE-A2MR-06 X 151821263 151821263 C T GABRQ Missense_Mutation p.A473V 0.11 tolerated(0.4) benign(0.005) TCGA-EE-A2MR-06 X 151869913 151869913 C T MAGEA6 Silent p.F201F 0.15 TCGA-EE-A2MR-06 X 151909211 151909211 G A CSAG1 3'UTR 0.18 TCGA-EE-A2MR-06 X 152994743 152994743 C T ABCD1 Silent p.L319L 0.35 TCGA-EE-A2MR-06 X 153141286 153141286 G A L1CAM Silent p.V2V 0.29 TCGA-EE-A2MR-06 X 153184723 153184723 G A ARHGAP4 Silent p.F272F 0.11 TCGA-EE-A2MR-06 X 153416405 153416405 C T OPN1LW Silent p.G130G 0.11 TCGA-EE-A2MR-06 X 153490621 153490621 C T OPN1MW2 Silent p.F119F 0.10 TCGA-EE-A2MR-06 X 153657475 153657475 C T ATP6AP1 Silent p.A81A 0.15 TCGA-EE-A2MR-06 X 153660634 153660634 C T ATP6AP1 Missense_Mutation p.S129F 0.20 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MR-06 X 153689749 153689749 T G PLXNA3 Missense_Mutation p.L302R 0.18 tolerated(0.77) benign(0.001) TCGA-EE-A2MR-06 X 154157483 154157483 C T F8 Missense_Mutation p.E1528K 0.20 tolerated(0.62) benign(0.004) TCGA-EE-A2MR-06 X 154225334 154225334 T G F8 Missense_Mutation p.D101A 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 X 15618904 15618904 G A ACE2 Missense_Mutation p.S44L 0.19 deleterious(0.05) probably_damaging(0.929) TCGA-EE-A2MR-06 X 16142262 16142262 C T GRPR Silent p.I62I 0.15 TCGA-EE-A2MR-06 X 16688711 16688711 G A CTPS2 Missense_Mutation p.P394L 0.23 deleterious(0) possibly_damaging(0.79) TCGA-EE-A2MR-06 X 1743159 1743159 C T ASMT Intron 0.11 TCGA-EE-A2MR-06 X 17744272 17744272 C T NHS Silent p.F661F 0.19 TCGA-EE-A2MR-06 X 17745841 17745841 T G NHS Silent p.S1184S 0.11 TCGA-EE-A2MR-06 X 17819666 17819666 G C RAI2 Silent p.L155L 0.33 TCGA-EE-A2MR-06 X 18221654 18221654 C T BEND2 Missense_Mutation p.A292T 0.36 tolerated(0.32) benign(0.003) TCGA-EE-A2MR-06 X 18626971 18626971 C T CDKL5 Missense_Mutation p.S662F 0.21 deleterious_low_confidence(0.03) benign(0.193) TCGA-EE-A2MR-06 X 19410591 19410591 C T MAP3K15 Missense_Mutation p.G732E 0.19 deleterious(0.03) probably_damaging(0.943) TCGA-EE-A2MR-06 X 21871530 21871530 C T MBTPS2 Silent p.L193L 0.12 TCGA-EE-A2MR-06 X 23018477 23018477 G A DDX53 Missense_Mutation p.M101I 0.11 tolerated(0.08) possibly_damaging(0.544) TCGA-EE-A2MR-06 X 24006308 24006308 G A KLHL15 Silent p.Y515Y 0.21 TCGA-EE-A2MR-06 X 26212392 26212392 C T MAGEB6 Silent p.S143S 0.24 TCGA-EE-A2MR-06 X 2838652 2838652 G A ARSD Silent p.T143T 0.34 TCGA-EE-A2MR-06 X 2838653 2838653 G A ARSD Missense_Mutation p.T143I 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MR-06 X 2867671 2867671 G A ARSE Silent p.S176S 0.26 TCGA-EE-A2MR-06 X 2867672 2867672 G A ARSE Missense_Mutation p.S176F 0.26 deleterious(0) probably_damaging(0.938) TCGA-EE-A2MR-06 X 295200 295200 G A PPP2R3B Missense_Mutation p.P544S 0.14 tolerated_low_confidence(0.24) benign(0.021) TCGA-EE-A2MR-06 X 3021832 3021832 G A ARSF Missense_Mutation p.G378R 0.42 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MR-06 X 30237172 30237172 G A MAGEB2 Missense_Mutation p.G159S 0.21 tolerated(0.31) benign(0.027) TCGA-EE-A2MR-06 X 30578107 30578107 C T CXorf21 Silent p.K122K 0.24 TCGA-EE-A2MR-06 X 3228060 3228060 C T MXRA5 Silent p.V2728V 0.16 TCGA-EE-A2MR-06 X 3236010 3236010 C T MXRA5 Silent p.R1904R 0.17 TCGA-EE-A2MR-06 X 3238772 3238772 G A MXRA5 Missense_Mutation p.P1652S 0.08 deleterious(0.05) benign(0.141) TCGA-EE-A2MR-06 X 3241724 3241724 C T MXRA5 Missense_Mutation p.V668M 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MR-06 X 32834595 32834595 G A DMD Missense_Mutation p.H174Y 0.17 possibly_damaging(0.763) TCGA-EE-A2MR-06 X 34148640 34148640 C T FAM47A Missense_Mutation p.E586K 0.11 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A2MR-06 X 34150303 34150303 C T FAM47A Silent p.A31A 0.29 TCGA-EE-A2MR-06 X 36091478 36091478 G A CHDC2 Missense_Mutation p.R138K 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MR-06 X 37027702 37027702 C T FAM47C Missense_Mutation p.P407S 0.26 deleterious(0.01) possibly_damaging(0.841) TCGA-EE-A2MR-06 X 37587525 37587525 C T XK Missense_Mutation p.S382F 0.25 tolerated(0.69) benign(0.005) TCGA-EE-A2MR-06 X 38033466 38033466 G A SRPX Missense_Mutation p.S99F 0.11 deleterious(0.01) possibly_damaging(0.682) TCGA-EE-A2MR-06 X 41029282 41029282 C T USP9X Nonsense_Mutation p.R891* 0.25 TCGA-EE-A2MR-06 X 41055511 41055511 C T USP9X Missense_Mutation p.R1329C 0.46 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MR-06 X 41414861 41414861 C T CASK Missense_Mutation p.G612R 0.50 tolerated(0.13) possibly_damaging(0.775) TCGA-EE-A2MR-06 X 44703567 44703567 C T DUSP21 Silent p.F63F 0.12 TCGA-EE-A2MR-06 X 46857534 46857534 G A JADE3 Missense_Mutation p.D47N 0.27 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MR-06 X 47104261 47104261 C T USP11 Missense_Mutation p.T718I 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2MR-06 X 47485900 47485900 G A CFP Missense_Mutation p.S320L 0.14 tolerated(0.3) benign(0.002) TCGA-EE-A2MR-06 X 48046211 48046211 G A SSX5 3'UTR 0.20 TCGA-EE-A2MR-06 X 48125808 48125808 G A SSX1 Missense_Mutation p.E185K 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 X 48399769 48399769 C T TBC1D25 Missense_Mutation p.P58S 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MR-06 X 48547050 48547050 G A WAS Silent p.E311E 0.15 TCGA-EE-A2MR-06 X 50377344 50377344 G A SHROOM4 Missense_Mutation p.R577C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 X 51488324 51488324 C T GSPT2 Silent p.I534I 0.22 TCGA-EE-A2MR-06 X 53421715 53421715 G A SMC1A Silent p.L986L 0.23 TCGA-EE-A2MR-06 X 54185987 54185987 G A FAM120C Silent p.F254F 0.38 TCGA-EE-A2MR-06 X 54783979 54783979 C T ITIH6 Missense_Mutation p.G843E 0.10 tolerated(0.21) benign(0.04) TCGA-EE-A2MR-06 X 54952870 54952870 C T TRO Silent p.L535L 0.27 TCGA-EE-A2MR-06 X 55290291 55290291 C T PAGE3 Missense_Mutation p.D16N 0.26 tolerated(0.77) probably_damaging(0.945) TCGA-EE-A2MR-06 X 57619841 57619841 T A ZXDB Missense_Mutation p.F454I 0.11 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MR-06 X 595387 595387 G A SHOX Silent p.V104V 0.12 TCGA-EE-A2MR-06 X 64719062 64719062 G A ZC3H12B Nonsense_Mutation p.W311* 0.15 TCGA-EE-A2MR-06 X 66765700 66765700 G A AR Missense_Mutation p.E238K 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A2MR-06 X 69263029 69263029 C T AWAT2 Missense_Mutation p.M179I 0.40 tolerated(0.25) benign(0.266) TCGA-EE-A2MR-06 X 69458123 69458123 C T AWAT1 Silent p.L174L 0.16 TCGA-EE-A2MR-06 X 69504464 69504464 G A RAB41 Missense_Mutation p.E213K 0.34 tolerated_low_confidence(0.41) benign(0.005) TCGA-EE-A2MR-06 X 69646718 69646718 C T GDPD2 Missense_Mutation p.P187S 0.14 tolerated(0.82) benign(0.04) TCGA-EE-A2MR-06 X 70145775 70145775 C T SLC7A3 Missense_Mutation p.G583D 0.26 deleterious(0) possibly_damaging(0.853) TCGA-EE-A2MR-06 X 70330370 70330370 T C IL2RG Silent p.L146L 0.10 TCGA-EE-A2MR-06 X 70342949 70342949 C T MED12 Missense_Mutation p.S497F 0.24 probably_damaging(0.953) TCGA-EE-A2MR-06 X 70519861 70519861 C T NONO Missense_Mutation p.P451S 0.12 deleterious(0.01) benign(0.024) TCGA-EE-A2MR-06 X 70679469 70679469 G A TAF1 Missense_Mutation p.S1731N 0.27 tolerated_low_confidence(0.14) probably_damaging(0.993) TCGA-EE-A2MR-06 X 72674277 72674277 C T CDX4 Silent p.S237S 0.27 TCGA-EE-A2MR-06 X 73065338 73065338 G A XIST RNA 0.16 TCGA-EE-A2MR-06 X 73066531 73066531 C T XIST RNA 0.25 TCGA-EE-A2MR-06 X 73751256 73751256 C T SLC16A2 Silent p.F496F 0.19 TCGA-EE-A2MR-06 X 75650688 75650688 C T MAGEE1 Missense_Mutation p.R789C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MR-06 X 77912632 77912632 G T ZCCHC5 Missense_Mutation p.P429Q 0.08 tolerated(0.1) benign(0.352) TCGA-EE-A2MR-06 X 77913531 77913531 G A ZCCHC5 Silent p.A129A 0.33 TCGA-EE-A2MR-06 X 7811890 7811890 G A VCX Missense_Mutation p.E152K 0.09 deleterious(0.02) unknown(0) TCGA-EE-A2MR-06 X 79973140 79973140 G A BRWD3 Silent p.A721A 0.37 TCGA-EE-A2MR-06 X 79973141 79973141 G A BRWD3 Missense_Mutation p.A721V 0.35 deleterious(0.03) possibly_damaging(0.521) TCGA-EE-A2MR-06 X 84362762 84362762 C T SATL1 Missense_Mutation p.G405S 0.21 tolerated(0.12) probably_damaging(0.986) TCGA-EE-A2MR-06 X 91090780 91090780 C T PCDH11X Missense_Mutation p.R93C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MR-06 X 96212846 96212846 C T DIAPH2 Missense_Mutation p.S545L 0.30 tolerated(0.3) unknown(0) TCGA-EE-A2MR-06 X 99917235 99917235 G A SRPX2 Missense_Mutation p.G76R 0.10 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MR-06 X 99955944 99955944 C T SYTL4 Missense_Mutation p.G163D 0.22 tolerated(0.16) benign(0.002) TCGA-EE-A2MR-06 Y 16952706 16952706 C T NLGN4Y Missense_Mutation p.S672F 0.17 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MR-06 Y 2655388 2655388 C T SRY Missense_Mutation p.R86Q 0.36 tolerated(1) benign(0.035) TCGA-EE-A2MR-06 Y 6114350 6114350 G A TSPY2 Missense_Mutation p.R14K 0.18 tolerated_low_confidence(0.97) benign(0.011) TCGA-EE-A2MS-06 10 101163312 101163312 G A GOT1 Silent p.I291I 0.29 TCGA-EE-A2MS-06 10 101372327 101372327 G A SLC25A28 Missense_Mutation p.H184Y 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 10 101731860 101731860 G A DNMBP Nonsense_Mutation p.R8* 0.30 TCGA-EE-A2MS-06 10 101969473 101969473 G A CHUK Missense_Mutation p.S336L 0.57 deleterious(0.02) benign(0.219) TCGA-EE-A2MS-06 10 102746445 102746445 G A MRPL43 Intron 0.56 TCGA-EE-A2MS-06 10 102746446 102746446 G A MRPL43 Intron 0.56 TCGA-EE-A2MS-06 10 102782035 102782035 G A PDZD7 Missense_Mutation p.S217F 0.21 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 10 102789776 102789776 G A PDZD7 Silent p.V67V 0.25 TCGA-EE-A2MS-06 10 102849570 102849570 C T TLX1NB Silent p.G31G 0.38 TCGA-EE-A2MS-06 10 103530315 103530315 G A FGF8 Missense_Mutation p.A169V 0.19 deleterious(0) probably_damaging(0.921) TCGA-EE-A2MS-06 10 103899555 103899555 C T PPRC1 Silent p.P430P 0.29 TCGA-EE-A2MS-06 10 103901607 103901607 C T PPRC1 Silent p.P1114P 0.31 TCGA-EE-A2MS-06 10 103912053 103912053 C T NOLC1 5'UTR 0.21 TCGA-EE-A2MS-06 10 104126880 104126881 - T GBF1 Frame_Shift_Ins p.S825Ffs*10 0.35 TCGA-EE-A2MS-06 10 104173805 104173805 G A PSD Missense_Mutation p.S425L 0.60 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2MS-06 10 104181773 104181773 C T FBXL15 Missense_Mutation p.S146L 0.24 tolerated(0.07) possibly_damaging(0.468) TCGA-EE-A2MS-06 10 1043103 1043103 C T GTPBP4 Intron 0.61 TCGA-EE-A2MS-06 10 104486897 104486897 C T SFXN2 Silent p.F105F 0.21 TCGA-EE-A2MS-06 10 105048256 105048256 C T INA Silent p.L444L 0.31 TCGA-EE-A2MS-06 10 105184908 105184908 C T PDCD11 Silent p.S977S 0.33 TCGA-EE-A2MS-06 10 105815715 105815715 C T COL17A1 Silent p.R504R 0.23 TCGA-EE-A2MS-06 10 105945794 105945794 C T WDR96 Missense_Mutation p.G650R 0.47 tolerated(0.11) possibly_damaging(0.464) TCGA-EE-A2MS-06 10 105953682 105953682 C T WDR96 Missense_Mutation p.E462K 0.24 tolerated(0.11) benign(0.02) TCGA-EE-A2MS-06 10 106160635 106160635 G A CCDC147 Silent p.R671R 0.54 TCGA-EE-A2MS-06 10 1066776 1066776 C T IDI2 Silent p.K99K 0.61 TCGA-EE-A2MS-06 10 106865176 106865176 G A SORCS3 Missense_Mutation p.R372K 0.45 tolerated(0.34) benign(0.085) TCGA-EE-A2MS-06 10 107005369 107005369 C T SORCS3 Nonsense_Mutation p.Q980* 0.32 TCGA-EE-A2MS-06 10 112266805 112266805 G A DUSP5 Missense_Mutation p.R214Q 0.48 tolerated(0.11) benign(0.064) TCGA-EE-A2MS-06 10 115348699 115348699 C T NRAP 3'UTR 0.28 TCGA-EE-A2MS-06 10 115526242 115526242 A T PLEKHS1 Missense_Mutation p.Q28L 0.54 deleterious(0.03) benign(0.187) TCGA-EE-A2MS-06 10 115537180 115537180 G A PLEKHS1 Silent p.R393R 0.33 TCGA-EE-A2MS-06 10 116606030 116606030 C T FAM160B1 Silent p.I434I 0.54 TCGA-EE-A2MS-06 10 118424405 118424405 C T C10orf82 Missense_Mutation p.G110S 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MS-06 10 119003599 119003599 C T SLC18A2 Missense_Mutation p.S80F 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MS-06 10 121355943 121355943 C T TIAL1 Intron 0.32 TCGA-EE-A2MS-06 10 121551380 121551380 G C INPP5F Splice_Site p.X149_splice 0.37 TCGA-EE-A2MS-06 10 122348878 122348878 C T PPAPDC1A Missense_Mutation p.P227L 0.52 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 10 123845315 123845315 G A TACC2 Missense_Mutation p.M1100I 0.59 benign(0.427) TCGA-EE-A2MS-06 10 124377614 124377614 C T DMBT1 Missense_Mutation p.S1529F 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A2MS-06 10 124377615 124377615 C T DMBT1 Silent p.S1529S 0.22 TCGA-EE-A2MS-06 10 124380826 124380826 G A DMBT1 Nonsense_Mutation p.W1717* 0.50 TCGA-EE-A2MS-06 10 124402907 124402907 C T DMBT1 Missense_Mutation p.P2412L 0.20 deleterious_low_confidence(0.01) benign(0.339) TCGA-EE-A2MS-06 10 124458905 124458905 G A C10orf120 Missense_Mutation p.S67L 0.36 tolerated(0.14) probably_damaging(0.964) TCGA-EE-A2MS-06 10 127414400 127414400 C T EDRF1 Missense_Mutation p.S262F 0.23 deleterious(0.02) possibly_damaging(0.718) TCGA-EE-A2MS-06 10 127731669 127731669 G A ADAM12 Missense_Mutation p.P685S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 10 127782640 127782640 G A ADAM12 Silent p.F356F 0.55 TCGA-EE-A2MS-06 10 128147757 128147757 G A C10orf90 Silent p.F583F 0.28 TCGA-EE-A2MS-06 10 129160391 129160391 C T DOCK1 Missense_Mutation p.P1095L 0.18 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A2MS-06 10 129902173 129902173 T C MKI67 Missense_Mutation p.K2644R 0.36 tolerated(0.34) possibly_damaging(0.565) TCGA-EE-A2MS-06 10 129911697 129911697 G A MKI67 Silent p.I550I 0.28 TCGA-EE-A2MS-06 10 134755113 134755113 C T TTC40 Silent p.P96P 0.33 TCGA-EE-A2MS-06 10 135025051 135025051 T C KNDC1 Missense_Mutation p.L1345P 0.16 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 10 135032539 135032539 G A KNDC1 Nonsense_Mutation p.W1602* 0.48 TCGA-EE-A2MS-06 10 135053636 135053636 C T VENTX Silent p.S201S 0.32 TCGA-EE-A2MS-06 10 135345187 135345187 C T CYP2E1 Missense_Mutation p.R146W 0.48 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MS-06 10 15121003 15121003 G A ACBD7 Silent p.L17L 0.33 TCGA-EE-A2MS-06 10 15255975 15255975 C T FAM171A1 Missense_Mutation p.E538K 0.42 deleterious(0.01) possibly_damaging(0.559) TCGA-EE-A2MS-06 10 15256024 15256024 G A FAM171A1 Silent p.P521P 0.29 TCGA-EE-A2MS-06 10 16866961 16866961 A T CUBN 3'UTR 0.32 TCGA-EE-A2MS-06 10 20335829 20335829 G A PLXDC2 Missense_Mutation p.R119Q 0.62 tolerated(0.08) possibly_damaging(0.73) TCGA-EE-A2MS-06 10 21108411 21108411 G A NEBL Missense_Mutation p.P666L 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 10 21435389 21435389 C T C10orf113 Missense_Mutation p.E17K 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-EE-A2MS-06 10 24721977 24721977 G A KIAA1217 Missense_Mutation p.E203K 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 10 24908410 24908410 G A ARHGAP21 Missense_Mutation p.P805L 0.37 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 10 26377302 26377302 C T MYO3A Silent p.L510L 0.20 TCGA-EE-A2MS-06 10 26455032 26455032 C T MYO3A Silent p.P1012P 0.29 TCGA-EE-A2MS-06 10 26490203 26490203 C T MYO3A Nonsense_Mutation p.Q1519* 0.31 TCGA-EE-A2MS-06 10 26513537 26513537 C T GAD2 Silent p.I227I 0.28 TCGA-EE-A2MS-06 10 27306649 27306649 G A ANKRD26 Missense_Mutation p.L1430F 0.33 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 10 28260179 28260179 C T ARMC4 Missense_Mutation p.E334K 0.28 tolerated(0.26) benign(0.008) TCGA-EE-A2MS-06 10 28284023 28284023 C T ARMC4 Missense_Mutation p.G17R 0.25 deleterious(0) benign(0.12) TCGA-EE-A2MS-06 10 28358748 28358748 C T MPP7 Missense_Mutation p.R386Q 0.38 tolerated(0.5) possibly_damaging(0.877) TCGA-EE-A2MS-06 10 31134208 31134208 A T ZNF438 Nonsense_Mutation p.C723* 0.58 TCGA-EE-A2MS-06 10 35328007 35328007 G A CUL2 Silent p.L259L 0.54 TCGA-EE-A2MS-06 10 37421216 37421216 A T ANKRD30A Missense_Mutation p.I131F 0.50 deleterious(0.02) possibly_damaging(0.803) TCGA-EE-A2MS-06 10 37440991 37440991 C T ANKRD30A Missense_Mutation p.P494L 0.48 tolerated(0.15) benign(0.076) TCGA-EE-A2MS-06 10 37455612 37455612 G A ANKRD30A Missense_Mutation p.G659E 0.31 tolerated(0.19) benign(0.003) TCGA-EE-A2MS-06 10 37482170 37482170 G A ANKRD30A Missense_Mutation p.M810I 0.20 tolerated(0.25) benign(0) TCGA-EE-A2MS-06 10 37488714 37488714 G A ANKRD30A Missense_Mutation p.E870K 0.32 tolerated(0.77) benign(0.032) TCGA-EE-A2MS-06 10 3823999 3823999 G A KLF6 Silent p.P170P 0.76 TCGA-EE-A2MS-06 10 38241797 38241797 G A ZNF25 Missense_Mutation p.S210F 0.29 deleterious(0) benign(0.169) TCGA-EE-A2MS-06 10 43018724 43018724 G A ZNF37BP RNA 0.32 TCGA-EE-A2MS-06 10 43285863 43285863 G A BMS1 Missense_Mutation p.M180I 0.27 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A2MS-06 10 436680 436680 C T DIP2C Missense_Mutation p.G462S 0.69 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2MS-06 10 43883070 43883070 G A HNRNPF Missense_Mutation p.S88F 0.56 deleterious(0) possibly_damaging(0.492) TCGA-EE-A2MS-06 10 45472977 45472977 C T C10orf10 Missense_Mutation p.D168N 0.57 tolerated(0.62) possibly_damaging(0.908) TCGA-EE-A2MS-06 10 45495838 45495838 G T C10orf25 Nonsense_Mutation p.C119* 0.17 TCGA-EE-A2MS-06 10 45644272 45644272 G A RP11-445N18.7 RNA 0.37 TCGA-EE-A2MS-06 10 46143839 46143839 C T ZFAND4 Missense_Mutation p.D158N 0.44 deleterious(0) probably_damaging(0.945) TCGA-EE-A2MS-06 10 465054 465054 G A DIP2C Silent p.S230S 0.50 TCGA-EE-A2MS-06 10 465055 465055 G A DIP2C Missense_Mutation p.S230F 0.50 tolerated(0.44) benign(0.191) TCGA-EE-A2MS-06 10 46999715 46999715 C T GPRIN2 Missense_Mutation p.H279Y 0.16 tolerated(0.13) benign(0.006) TCGA-EE-A2MS-06 10 47087258 47087258 G A NPY4R Missense_Mutation p.G159R 0.12 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MS-06 10 48370492 48370492 G A ZNF488 5'UTR 0.73 TCGA-EE-A2MS-06 10 48388736 48388736 G A RBP3 Silent p.P714P 0.24 TCGA-EE-A2MS-06 10 48389674 48389674 C T RBP3 Missense_Mutation p.D402N 0.28 tolerated(0.16) benign(0.218) TCGA-EE-A2MS-06 10 48389873 48389873 C T RBP3 Silent p.E335E 0.26 TCGA-EE-A2MS-06 10 4881973 4881973 C T AKR1E2 Missense_Mutation p.S212F 0.62 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A2MS-06 10 50374908 50374908 C A C10orf128 Intron 0.49 TCGA-EE-A2MS-06 10 50531805 50531805 C T C10orf71 Silent p.N405N 0.20 TCGA-EE-A2MS-06 10 50682237 50682237 A T ERCC6 Missense_Mutation p.F812I 0.21 deleterious(0.01) benign(0.145) TCGA-EE-A2MS-06 10 50682238 50682238 G A ERCC6 Silent p.L811L 0.20 TCGA-EE-A2MS-06 10 50819632 50819632 C T SLC18A3 Silent p.I282I 0.29 TCGA-EE-A2MS-06 10 50854610 50854610 G A CHAT Missense_Mutation p.D391N 0.49 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 10 50860052 50860052 G A CHAT Missense_Mutation p.R545K 0.30 tolerated(0.49) benign(0.071) TCGA-EE-A2MS-06 10 50870760 50870760 G A CHAT Missense_Mutation p.E637K 0.24 tolerated(0.15) benign(0.378) TCGA-EE-A2MS-06 10 50916683 50916683 G A C10orf53 3'UTR 0.22 TCGA-EE-A2MS-06 10 50952095 50952095 G A OGDHL Silent p.T602T 0.46 TCGA-EE-A2MS-06 10 51555799 51555799 C T MSMB Silent p.F24F 0.23 TCGA-EE-A2MS-06 10 52071147 52071147 C T SGMS1 Missense_Mutation p.R257Q 0.71 tolerated(0.96) benign(0.053) TCGA-EE-A2MS-06 10 53814296 53814296 C T PRKG1 Missense_Mutation p.T272I 0.21 deleterious(0) possibly_damaging(0.869) TCGA-EE-A2MS-06 10 55566661 55566661 G A PCDH15 Missense_Mutation p.P1575L 0.32 tolerated_low_confidence(0.06) benign(0) TCGA-EE-A2MS-06 10 55582628 55582628 C T PCDH15 Missense_Mutation p.G1622S 0.50 tolerated_low_confidence(0.14) benign(0.046) TCGA-EE-A2MS-06 10 55583058 55583058 C T PCDH15 Silent p.R1478R 0.56 TCGA-EE-A2MS-06 10 61029849 61029849 C T FAM13C Missense_Mutation p.D205N 0.64 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A2MS-06 10 61043173 61043173 G A FAM13C Missense_Mutation p.P181L 0.56 deleterious(0.01) possibly_damaging(0.793) TCGA-EE-A2MS-06 10 61043174 61043174 G T FAM13C Missense_Mutation p.P181T 0.56 tolerated(0.05) possibly_damaging(0.783) TCGA-EE-A2MS-06 10 61412465 61412465 G A SLC16A9 3'UTR 0.21 TCGA-EE-A2MS-06 10 61413575 61413575 C T SLC16A9 Silent p.G403G 0.20 TCGA-EE-A2MS-06 10 61830713 61830713 G A ANK3 Missense_Mutation p.P3309L 0.21 probably_damaging(0.994) TCGA-EE-A2MS-06 10 61835032 61835032 G A ANK3 Silent p.F1869F 0.29 TCGA-EE-A2MS-06 10 61835477 61835477 G A ANK3 Missense_Mutation p.S1721F 0.18 probably_damaging(0.979) TCGA-EE-A2MS-06 10 61932885 61932885 G A ANK3 Silent p.F748F 0.66 TCGA-EE-A2MS-06 10 61967832 61967832 G A ANK3 Missense_Mutation p.L386F 0.35 probably_damaging(0.997) TCGA-EE-A2MS-06 10 62149192 62149192 C T ANK3 Silent p.R35R 0.36 TCGA-EE-A2MS-06 10 62652649 62652649 G A RHOBTB1 Missense_Mutation p.P134L 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 10 63850952 63850952 C T ARID5B Missense_Mutation p.S577F 0.34 tolerated(0.09) benign(0.119) TCGA-EE-A2MS-06 10 64382881 64382881 C T ZNF365 Missense_Mutation p.H334Y 0.49 tolerated_low_confidence(0.37) benign(0) TCGA-EE-A2MS-06 10 67680077 67680077 G A CTNNA3 3'UTR 0.67 TCGA-EE-A2MS-06 10 68857449 68857449 G A LRRTM3 Silent p.T547T 0.32 TCGA-EE-A2MS-06 10 69961688 69961688 C T MYPN Missense_Mutation p.P1199L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 10 70332986 70332986 C T TET1 Silent p.Y297Y 0.19 TCGA-EE-A2MS-06 10 71119753 71119753 C T HK1 Silent p.S113S 0.31 TCGA-EE-A2MS-06 10 72136260 72136260 G A LRRC20 Silent p.A10A 0.34 TCGA-EE-A2MS-06 10 72291073 72291073 G A PALD1 Missense_Mutation p.E166K 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 10 72291163 72291163 G A PALD1 Missense_Mutation p.G196R 0.29 tolerated(0.16) possibly_damaging(0.887) TCGA-EE-A2MS-06 10 72291208 72291208 G A PALD1 Missense_Mutation p.E211K 0.29 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 10 72300953 72300953 C T PALD1 Silent p.T668T 0.26 TCGA-EE-A2MS-06 10 72531071 72531071 G A TBATA 3'UTR 0.31 TCGA-EE-A2MS-06 10 73051390 73051390 G A UNC5B Missense_Mutation p.G499E 0.33 tolerated(1) benign(0.197) TCGA-EE-A2MS-06 10 73051439 73051439 C T UNC5B Silent p.F515F 0.55 TCGA-EE-A2MS-06 10 73082758 73082758 C T SLC29A3 Missense_Mutation p.R83C 0.37 deleterious(0.04) benign(0.008) TCGA-EE-A2MS-06 10 73082809 73082809 C T SLC29A3 Silent p.L100L 0.45 TCGA-EE-A2MS-06 10 73550937 73550937 C T CDH23 5'Flank 0.25 TCGA-EE-A2MS-06 10 74620224 74620224 C T MCU Silent p.L145L 0.25 TCGA-EE-A2MS-06 10 75849867 75849867 A G VCL Silent p.L421L 0.29 TCGA-EE-A2MS-06 10 75960564 75960564 C T ADK Silent p.I36I 0.49 TCGA-EE-A2MS-06 10 78943217 78943217 G A KCNMA1 Missense_Mutation p.P257L 0.54 deleterious(0) probably_damaging(0.935) TCGA-EE-A2MS-06 10 79593792 79593792 A T DLG5 Missense_Mutation p.L543Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 10 81063817 81063817 C T ZMIZ1 Missense_Mutation p.T724I 0.33 benign(0.209) TCGA-EE-A2MS-06 10 82034920 82034920 C T MAT1A Silent p.V268V 0.31 TCGA-EE-A2MS-06 10 83635430 83635430 C T NRG3 Missense_Mutation p.P112S 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 10 85984534 85984534 G A LRIT2 Silent p.F149F 0.45 TCGA-EE-A2MS-06 10 87489366 87489366 C T GRID1 Silent p.A413A 0.38 TCGA-EE-A2MS-06 10 87628888 87628888 C T GRID1 Missense_Mutation p.R277K 0.24 tolerated(0.26) benign(0.12) TCGA-EE-A2MS-06 10 88704965 88704965 C T MMRN2 Missense_Mutation p.G154E 0.57 tolerated(1) benign(0.002) TCGA-EE-A2MS-06 10 88759215 88759215 C T RP11-96C23.14 RNA 0.27 TCGA-EE-A2MS-06 10 88769359 88769359 C T RP11-96C23.10 3'Flank 0.30 TCGA-EE-A2MS-06 10 88769434 88769434 C T RP11-96C23.10 3'Flank 0.52 TCGA-EE-A2MS-06 10 88811610 88811610 G A GLUD1 Silent p.A525A 0.50 TCGA-EE-A2MS-06 10 91177344 91177344 C T IFIT5 Missense_Mutation p.P130S 0.27 tolerated(0.16) benign(0.009) TCGA-EE-A2MS-06 10 91198441 91198441 C T SLC16A12 Silent p.Q316Q 0.30 TCGA-EE-A2MS-06 10 91222195 91222195 C T SLC16A12 Nonsense_Mutation p.W47* 0.15 TCGA-EE-A2MS-06 10 91344136 91344136 G A PANK1 3'UTR 0.51 TCGA-EE-A2MS-06 10 91497753 91497753 C T KIF20B Missense_Mutation p.S1012F 0.35 deleterious(0) possibly_damaging(0.807) TCGA-EE-A2MS-06 10 93668634 93668634 C T FGFBP3 Silent p.G31G 0.36 TCGA-EE-A2MS-06 10 93771156 93771156 C T BTAF1 Missense_Mutation p.S1432F 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 10 94247036 94247036 G A IDE Missense_Mutation p.P525S 0.22 deleterious(0.02) possibly_damaging(0.557) TCGA-EE-A2MS-06 10 94454438 94454438 C T HHEX Silent p.S242S 0.27 TCGA-EE-A2MS-06 10 94837052 94837052 G A CYP26A1 Silent p.G495G 0.20 TCGA-EE-A2MS-06 10 95380735 95380735 C T PDE6C Nonsense_Mutation p.Q241* 0.25 TCGA-EE-A2MS-06 10 95720036 95720036 C T PIPSL RNA 0.30 TCGA-EE-A2MS-06 10 96044689 96044689 C T PLCE1 Missense_Mutation p.L1668F 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 10 96443650 96443650 G A CYP2C18 Missense_Mutation p.G25E 0.60 tolerated(0.18) benign(0.011) TCGA-EE-A2MS-06 10 96495124 96495124 G A CYP2C18 Missense_Mutation p.D466N 0.47 deleterious(0.05) benign(0.05) TCGA-EE-A2MS-06 10 96540305 96540305 G A CYP2C19 Silent p.V177V 0.52 TCGA-EE-A2MS-06 10 96612635 96612635 C T CYP2C19 Silent p.V479V 0.20 TCGA-EE-A2MS-06 10 96731861 96731861 G A CYP2C9 Missense_Mutation p.E274K 0.36 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A2MS-06 10 96740983 96740983 G A CYP2C9 Silent p.R335R 0.29 TCGA-EE-A2MS-06 10 97605216 97605216 C T ENTPD1 Nonsense_Mutation p.Q238* 0.55 TCGA-EE-A2MS-06 10 97917321 97917321 C T ZNF518A RNA 0.59 TCGA-EE-A2MS-06 10 98092340 98092340 G A DNTT Nonsense_Mutation p.W449* 0.35 TCGA-EE-A2MS-06 10 98095702 98095702 G A DNTT Missense_Mutation p.D472N 0.52 tolerated(0.45) probably_damaging(1) TCGA-EE-A2MS-06 10 98108077 98108077 G A OPALIN Missense_Mutation p.S73L 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.765) TCGA-EE-A2MS-06 10 98155732 98155732 G A TLL2 Missense_Mutation p.S477F 0.31 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MS-06 10 98376447 98376447 C T PIK3AP1 Missense_Mutation p.D655N 0.21 tolerated(0.1) possibly_damaging(0.705) TCGA-EE-A2MS-06 10 98742843 98742843 C T C10orf12 Missense_Mutation p.H566Y 0.56 tolerated(0.17) possibly_damaging(0.897) TCGA-EE-A2MS-06 11 100061878 100061878 G A CNTN5 Missense_Mutation p.G534E 0.32 deleterious(0.02) possibly_damaging(0.857) TCGA-EE-A2MS-06 11 100179262 100179262 G A CNTN5 Intron 0.33 TCGA-EE-A2MS-06 11 100999107 100999107 G A PGR Missense_Mutation p.S232F 0.22 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-EE-A2MS-06 11 101342876 101342876 C T TRPC6 Missense_Mutation p.E733K 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MS-06 11 101776579 101776579 C T ANGPTL5 Splice_Site p.X81_splice 0.14 TCGA-EE-A2MS-06 11 103907792 103907792 G A DDI1 Missense_Mutation p.G81E 0.48 tolerated(0.57) benign(0.001) TCGA-EE-A2MS-06 11 103908311 103908311 C T DDI1 Missense_Mutation p.P254L 0.51 deleterious(0) possibly_damaging(0.86) TCGA-EE-A2MS-06 11 104972156 104972156 C T CARD17 5'UTR 0.28 TCGA-EE-A2MS-06 11 105842677 105842677 G A GRIA4 Silent p.E777E 0.48 TCGA-EE-A2MS-06 11 10602094 10602094 C T MRVI1 Silent p.L801L 0.82 TCGA-EE-A2MS-06 11 10647561 10647561 C T MRVI1 Silent p.Q440Q 1.00 TCGA-EE-A2MS-06 11 10655561 10655561 C T MRVI1 Missense_Mutation p.D95N 0.69 tolerated(0.4) benign(0.019) TCGA-EE-A2MS-06 11 107260882 107260882 A G CWF19L2 Missense_Mutation p.L597P 0.41 deleterious(0.02) benign(0.165) TCGA-EE-A2MS-06 11 107260883 107260883 G A CWF19L2 Silent p.L597L 0.39 TCGA-EE-A2MS-06 11 113712389 113712389 T C USP28 Missense_Mutation p.N124D 0.75 tolerated(0.11) benign(0.011) TCGA-EE-A2MS-06 11 114121090 114121090 G T ZBTB16 Missense_Mutation p.R612L 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 11 114453476 114453476 C T NXPE4 Missense_Mutation p.E122K 0.64 deleterious(0.01) benign(0.038) TCGA-EE-A2MS-06 11 117152097 117152097 C T RNF214 Missense_Mutation p.R405W 0.70 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 11 117242073 117242073 C T CEP164 Missense_Mutation p.P348L 0.72 tolerated(0.26) benign(0.009) TCGA-EE-A2MS-06 11 118769743 118769743 G A BCL9L Missense_Mutation p.P1294L 0.78 possibly_damaging(0.703) TCGA-EE-A2MS-06 11 118769744 118769744 G A BCL9L Missense_Mutation p.P1294S 0.78 benign(0.092) TCGA-EE-A2MS-06 11 119545890 119545890 G A PVRL1 Nonsense_Mutation p.Q328* 0.55 TCGA-EE-A2MS-06 11 121058574 121058574 C T TECTA Silent p.I2011I 0.57 TCGA-EE-A2MS-06 11 12265648 12265648 C T MICAL2 Missense_Mutation p.P925S 0.76 tolerated(0.35) benign(0.002) TCGA-EE-A2MS-06 11 122669681 122669681 C T UBASH3B Silent p.I463I 0.70 TCGA-EE-A2MS-06 11 122738726 122738726 G A CRTAM Missense_Mutation p.E324K 0.57 deleterious(0.01) possibly_damaging(0.802) TCGA-EE-A2MS-06 11 12313835 12313835 C T MICALCL Silent p.S40S 0.76 TCGA-EE-A2MS-06 11 123755324 123755324 C T TMEM225 Silent p.R67R 0.50 TCGA-EE-A2MS-06 11 123887152 123887152 A T OR10G4 Missense_Mutation p.N291Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 11 123909189 123909189 G A OR10G7 Nonsense_Mutation p.Q174* 0.56 TCGA-EE-A2MS-06 11 124135744 124135744 G A OR8G5 Missense_Mutation p.G341E 0.89 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MS-06 11 128426213 128426213 G A ETS1 Missense_Mutation p.P63S 0.74 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MS-06 11 130785480 130785480 G A SNX19 Missense_Mutation p.R119C 0.67 tolerated(0.11) benign(0.052) TCGA-EE-A2MS-06 11 134241034 134241034 C T GLB1L2 Missense_Mutation p.R450W 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A2MS-06 11 18231403 18231403 C T RP11-113D6.10 Silent p.L63L 0.67 TCGA-EE-A2MS-06 11 18231744 18231744 C T RP11-113D6.10 3'UTR 0.74 TCGA-EE-A2MS-06 11 18266935 18266935 C T SAA2 Missense_Mutation p.E120K 0.79 tolerated(0.46) benign(0.003) TCGA-EE-A2MS-06 11 18303642 18303642 C T HPS5 Missense_Mutation p.V1062M 0.77 tolerated(0.19) benign(0.273) TCGA-EE-A2MS-06 11 18382231 18382231 C T GTF2H1 Missense_Mutation p.R513W 0.79 tolerated(0.19) benign(0.007) TCGA-EE-A2MS-06 11 18505616 18505616 G A TSG101 Missense_Mutation p.P215L 0.84 tolerated(0.05) benign(0.015) TCGA-EE-A2MS-06 11 18735851 18735851 C T IGSF22 Missense_Mutation p.E591K 0.90 tolerated(0.38) benign(0.293) TCGA-EE-A2MS-06 11 18956242 18956242 G A MRGPRX1 Silent p.L30L 0.76 TCGA-EE-A2MS-06 11 20869269 20869269 C T NELL1 Missense_Mutation p.S159F 0.64 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 11 20948935 20948935 C T NELL1 Nonsense_Mutation p.R281* 0.87 TCGA-EE-A2MS-06 11 26463526 26463526 C T ANO3 Silent p.S36S 0.77 TCGA-EE-A2MS-06 11 26734223 26734223 G A SLC5A12 Missense_Mutation p.R124C 0.80 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 11 27016309 27016309 C T FIBIN Missense_Mutation p.T79I 0.62 tolerated_low_confidence(0.38) benign(0.034) TCGA-EE-A2MS-06 11 284554 284554 G A NLRP6 Missense_Mutation p.D818N 0.26 tolerated(0.14) benign(0.07) TCGA-EE-A2MS-06 11 30928159 30928159 G A DCDC1 Silent p.F1344F 0.72 TCGA-EE-A2MS-06 11 30946894 30946894 C T DCDC1 Missense_Mutation p.E987K 0.73 deleterious(0) possibly_damaging(0.486) TCGA-EE-A2MS-06 11 3109521 3109521 G A OSBPL5 Missense_Mutation p.P852S 0.97 tolerated(0.3) benign(0.009) TCGA-EE-A2MS-06 11 34502436 34502436 C T ELF5 Nonsense_Mutation p.W195* 0.77 TCGA-EE-A2MS-06 11 34991824 34991824 C T PDHX Silent p.L319L 0.75 TCGA-EE-A2MS-06 11 35515740 35515740 C T PAMR1 Missense_Mutation p.E52K 0.89 tolerated(0.37) benign(0.019) TCGA-EE-A2MS-06 11 36250735 36250735 C T LDLRAD3 Missense_Mutation p.P276S 0.79 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MS-06 11 36422639 36422639 C T PRR5L 5'UTR 0.86 TCGA-EE-A2MS-06 11 36594953 36594953 C T RAG1 Silent p.F33F 0.71 TCGA-EE-A2MS-06 11 40137343 40137343 G A LRRC4C Missense_Mutation p.A167V 0.23 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A2MS-06 11 404586 404586 G A PKP3 3'UTR 0.83 TCGA-EE-A2MS-06 11 404588 404588 G A PKP3 3'UTR 0.87 TCGA-EE-A2MS-06 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.67 tolerated(0.12) probably_damaging(0.988) TCGA-EE-A2MS-06 11 45274137 45274137 G A SYT13 Silent p.L227L 0.67 TCGA-EE-A2MS-06 11 4566714 4566714 C T OR52M1 Silent p.A98A 0.77 TCGA-EE-A2MS-06 11 4566771 4566771 C T OR52M1 Silent p.F117F 0.72 TCGA-EE-A2MS-06 11 4598922 4598922 G A C11orf40 Silent p.T43T 0.72 TCGA-EE-A2MS-06 11 46747445 46747445 C T F2 Missense_Mutation p.S199F 0.86 tolerated(0.17) benign(0.004) TCGA-EE-A2MS-06 11 46747446 46747446 C T F2 Silent p.S199S 0.86 TCGA-EE-A2MS-06 11 4703487 4703487 G A OR51E2 Missense_Mutation p.S152F 0.77 tolerated(0.5) benign(0.009) TCGA-EE-A2MS-06 11 4703801 4703801 G A OR51E2 Silent p.I47I 0.24 TCGA-EE-A2MS-06 11 47186849 47186849 G A ARFGAP2 3'UTR 0.80 TCGA-EE-A2MS-06 11 47681899 47681899 C T AGBL2 Splice_Site p.X846_splice 0.75 TCGA-EE-A2MS-06 11 4790304 4790304 A T OR51F1 Missense_Mutation p.Y282N 0.77 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2MS-06 11 4824861 4824861 G A OR52R1 Silent p.V250V 0.74 TCGA-EE-A2MS-06 11 48510680 48510680 C T OR4A47 Silent p.L112L 0.79 TCGA-EE-A2MS-06 11 4869969 4869969 G A OR51S1 Missense_Mutation p.S157F 0.78 tolerated(0.11) benign(0.003) TCGA-EE-A2MS-06 11 4928765 4928765 C T OR51A7 Missense_Mutation p.H56Y 0.79 deleterious(0.01) benign(0.443) TCGA-EE-A2MS-06 11 5322912 5322912 C T OR51B4 Missense_Mutation p.E89K 0.83 tolerated(0.07) benign(0.039) TCGA-EE-A2MS-06 11 5462354 5462354 G A OR51I1 Missense_Mutation p.P131S 0.77 deleterious(0.01) benign(0.424) TCGA-EE-A2MS-06 11 55110799 55110799 C T OR4A16 Silent p.L41L 0.53 TCGA-EE-A2MS-06 11 55541558 55541558 C T OR5D13 Silent p.I215I 0.24 TCGA-EE-A2MS-06 11 55653307 55653307 G A TRIM51 Missense_Mutation p.E135K 0.55 tolerated(0.07) benign(0.167) TCGA-EE-A2MS-06 11 55681306 55681306 G A OR5W2 Silent p.F251F 0.46 TCGA-EE-A2MS-06 11 55860905 55860905 G A OR8I2 Missense_Mutation p.G41E 0.59 deleterious(0.01) benign(0.052) TCGA-EE-A2MS-06 11 55890114 55890114 C T OR8H3 Missense_Mutation p.S89F 0.48 deleterious(0.01) benign(0.014) TCGA-EE-A2MS-06 11 56128572 56128572 C T OR8J1 Missense_Mutation p.P284S 0.19 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A2MS-06 11 56184763 56184763 T G OR5R1 Missense_Mutation p.T316P 0.69 tolerated_low_confidence(0.26) benign(0.001) TCGA-EE-A2MS-06 11 56310114 56310114 G A OR5M11 Missense_Mutation p.S207F 0.19 tolerated(0.13) possibly_damaging(0.824) TCGA-EE-A2MS-06 11 56380307 56380307 C T OR5M1 Silent p.A224A 0.52 TCGA-EE-A2MS-06 11 57155261 57155261 G A PRG2 Silent p.S192S 0.23 TCGA-EE-A2MS-06 11 57155262 57155262 G A PRG2 Missense_Mutation p.S192F 0.29 tolerated(0.71) benign(0.003) TCGA-EE-A2MS-06 11 57577603 57577603 C T CTNND1 Nonsense_Mutation p.R820* 0.24 TCGA-EE-A2MS-06 11 57970737 57970737 C T OR1S2 Missense_Mutation p.R306K 0.54 deleterious(0.02) benign(0.04) TCGA-EE-A2MS-06 11 58170031 58170031 G A OR5B3 Silent p.N284N 0.31 TCGA-EE-A2MS-06 11 58170330 58170330 G A OR5B3 Missense_Mutation p.L185F 0.44 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-EE-A2MS-06 11 58170843 58170843 C T OR5B3 Missense_Mutation p.G14R 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MS-06 11 58294909 58294909 G A LPXN 3'UTR 0.49 TCGA-EE-A2MS-06 11 58601919 58601919 G A GLYATL2 Missense_Mutation p.P290S 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 11 58607014 58607014 G A GLYATL2 Silent p.S24S 0.24 TCGA-EE-A2MS-06 11 587401 587401 C A PHRF1 Silent p.A119A 0.50 TCGA-EE-A2MS-06 11 58893522 58893522 G A FAM111B Missense_Mutation p.G651D 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 11 59211432 59211432 G A OR5A1 Missense_Mutation p.R264Q 0.62 tolerated(0.2) possibly_damaging(0.529) TCGA-EE-A2MS-06 11 59245505 59245505 C T OR4D10 Silent p.S201S 0.61 TCGA-EE-A2MS-06 11 59271107 59271107 C T OR4D11 Missense_Mutation p.S20F 0.25 tolerated(0.24) possibly_damaging(0.707) TCGA-EE-A2MS-06 11 59425053 59425053 G A PATL1 Missense_Mutation p.P191S 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 11 59947394 59947394 G A MS4A6A Silent p.I92I 0.17 TCGA-EE-A2MS-06 11 60075722 60075722 G A MS4A4A 3'UTR 0.33 TCGA-EE-A2MS-06 11 60184081 60184081 C T MS4A14 Missense_Mutation p.S580F 0.57 tolerated(0.12) benign(0.051) TCGA-EE-A2MS-06 11 60233401 60233401 G A MS4A1 Missense_Mutation p.G115E 0.42 tolerated(0.06) possibly_damaging(0.606) TCGA-EE-A2MS-06 11 60704361 60704361 G A TMEM132A Silent p.R1019R 0.71 TCGA-EE-A2MS-06 11 61058815 61058815 G A VWCE Silent p.S72S 0.54 TCGA-EE-A2MS-06 11 61081116 61081116 G A DDB1 Missense_Mutation p.R642C 0.46 deleterious(0) possibly_damaging(0.817) TCGA-EE-A2MS-06 11 61405054 61405054 C T RPLP0P2 RNA 0.48 TCGA-EE-A2MS-06 11 61504750 61504750 C T DAGLA Missense_Mutation p.P490S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 11 61906201 61906201 C A INCENP Missense_Mutation p.P378T 0.23 tolerated(0.18) unknown(0) TCGA-EE-A2MS-06 11 61906202 61906202 C T INCENP Missense_Mutation p.P378L 0.23 tolerated(0.15) unknown(0) TCGA-EE-A2MS-06 11 62288237 62288237 G A AHNAK Missense_Mutation p.P4551L 0.32 possibly_damaging(0.905) TCGA-EE-A2MS-06 11 62291528 62291528 G A AHNAK Missense_Mutation p.P3454L 0.18 probably_damaging(0.999) TCGA-EE-A2MS-06 11 62291529 62291529 G C AHNAK Missense_Mutation p.P3454A 0.18 probably_damaging(0.997) TCGA-EE-A2MS-06 11 6235747 6235747 G A FAM160A2 Silent p.F831F 0.80 TCGA-EE-A2MS-06 11 62373192 62373192 G T EML3 Missense_Mutation p.F612L 0.34 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A2MS-06 11 62376050 62376050 G A EML3 Silent p.F358F 0.52 TCGA-EE-A2MS-06 11 62432972 62432972 C T C11orf48 Intron 0.58 TCGA-EE-A2MS-06 11 62432973 62432973 C T C11orf48 Intron 0.58 TCGA-EE-A2MS-06 11 62677552 62677552 G A CHRM1 Nonsense_Mutation p.Q341* 0.60 TCGA-EE-A2MS-06 11 62749403 62749403 G A SLC22A6 Silent p.L236L 0.48 TCGA-EE-A2MS-06 11 62760813 62760813 G A SLC22A8 Intron 0.21 TCGA-EE-A2MS-06 11 63174110 63174110 C T SLC22A9 Silent p.N405N 0.59 TCGA-EE-A2MS-06 11 63175680 63175680 C T SLC22A9 Missense_Mutation p.P462L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 11 63273900 63273900 G A LGALS12 Silent p.T12T 0.29 TCGA-EE-A2MS-06 11 63283740 63283740 G A LGALS12 Missense_Mutation p.G297R 0.37 tolerated(0.98) benign(0.05) TCGA-EE-A2MS-06 11 63357705 63357705 G A PLA2G16 Missense_Mutation p.S85L 0.60 tolerated(0.28) benign(0.004) TCGA-EE-A2MS-06 11 63918757 63918757 G A MACROD1 Silent p.L157L 0.26 TCGA-EE-A2MS-06 11 64056833 64056833 C T GPR137 Missense_Mutation p.P475L 0.51 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EE-A2MS-06 11 64111765 64111765 G A CCDC88B Silent p.E584E 0.41 TCGA-EE-A2MS-06 11 64121212 64121212 G A CCDC88B Missense_Mutation p.E1287K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 11 64366040 64366040 G A SLC22A12 Missense_Mutation p.G295S 0.50 deleterious(0.03) benign(0.265) TCGA-EE-A2MS-06 11 64402788 64402788 C T NRXN2 Silent p.R1180R 0.41 TCGA-EE-A2MS-06 11 64669577 64669577 G A ATG2A Missense_Mutation p.P1326S 0.21 tolerated(0.19) benign(0.003) TCGA-EE-A2MS-06 11 64669578 64669578 G A ATG2A Silent p.P1325P 0.21 TCGA-EE-A2MS-06 11 64673043 64673043 G A ATG2A Silent p.F1152F 0.50 TCGA-EE-A2MS-06 11 64699222 64699222 T G PPP2R5B Missense_Mutation p.V333G 0.30 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MS-06 11 64825463 64825463 G A NAALADL1 Missense_Mutation p.P122S 0.25 tolerated(0.42) benign(0.001) TCGA-EE-A2MS-06 11 65306023 65306023 C T SCYL1 Missense_Mutation p.R805W 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 11 65313968 65313968 G A LTBP3 Silent p.F766F 0.68 TCGA-EE-A2MS-06 11 65315422 65315422 G A LTBP3 Silent p.Y605Y 0.60 TCGA-EE-A2MS-06 11 65631084 65631084 C T MUS81 Missense_Mutation p.P285S 0.73 tolerated(0.14) benign(0.045) TCGA-EE-A2MS-06 11 65631085 65631085 C T MUS81 Missense_Mutation p.P285L 0.79 deleterious(0.02) benign(0.069) TCGA-EE-A2MS-06 11 65734964 65734964 C T SART1 Nonsense_Mutation p.R446* 0.36 TCGA-EE-A2MS-06 11 65793363 65793363 G A CATSPER1 Missense_Mutation p.S163F 0.26 tolerated(0.38) probably_damaging(0.916) TCGA-EE-A2MS-06 11 66335051 66335051 G A CTSF Missense_Mutation p.P132L 0.26 tolerated(0.35) benign(0.035) TCGA-EE-A2MS-06 11 6635861 6635861 G A TPP1 Silent p.F536F 0.38 TCGA-EE-A2MS-06 11 66392846 66392846 C T RBM14 Missense_Mutation p.A500V 0.11 deleterious(0.01) unknown(0) TCGA-EE-A2MS-06 11 66468095 66468095 G A SPTBN2 Nonsense_Mutation p.R1159* 0.59 TCGA-EE-A2MS-06 11 66472485 66472485 G A SPTBN2 Silent p.A754A 0.73 TCGA-EE-A2MS-06 11 67177183 67177183 G A TBC1D10C Silent p.R433R 0.22 TCGA-EE-A2MS-06 11 67223165 67223165 G A CABP4 Missense_Mutation p.A91T 0.55 tolerated(0.13) benign(0.004) TCGA-EE-A2MS-06 11 67402522 67402522 G A TBX10 Silent p.L74L 0.47 TCGA-EE-A2MS-06 11 67430573 67430573 A G ALDH3B2 3'UTR 0.28 TCGA-EE-A2MS-06 11 67433642 67433642 C T ALDH3B2 Silent p.Q90Q 0.30 TCGA-EE-A2MS-06 11 67800476 67800476 C T NDUFS8 Nonsense_Mutation p.R66* 0.52 TCGA-EE-A2MS-06 11 68154023 68154023 G A LRP5 Missense_Mutation p.D419N 0.27 deleterious(0.03) possibly_damaging(0.828) TCGA-EE-A2MS-06 11 68748298 68748298 C T MRGPRD Missense_Mutation p.G53D 0.31 tolerated(0.06) possibly_damaging(0.903) TCGA-EE-A2MS-06 11 70009430 70009430 C T ANO1 Missense_Mutation p.S645F 0.38 deleterious(0.03) possibly_damaging(0.866) TCGA-EE-A2MS-06 11 70052623 70052623 C T FADD 3'UTR 0.58 TCGA-EE-A2MS-06 11 70052624 70052624 C T FADD 3'UTR 0.58 TCGA-EE-A2MS-06 11 70333233 70333233 G A SHANK2 Silent p.I1056I 0.25 TCGA-EE-A2MS-06 11 7079535 7079535 G A NLRP14 Silent p.E829E 0.72 TCGA-EE-A2MS-06 11 71724483 71724483 G A NUMA1 Silent p.L1356L 0.30 TCGA-EE-A2MS-06 11 71821052 71821052 G A LRTOMT 3'UTR 0.55 TCGA-EE-A2MS-06 11 72004364 72004364 G A CLPB 3'UTR 0.53 TCGA-EE-A2MS-06 11 72423533 72423533 G A ARAP1 Silent p.D276D 0.30 TCGA-EE-A2MS-06 11 73075268 73075268 C T ARHGEF17 Silent p.V1795V 0.28 TCGA-EE-A2MS-06 11 73372660 73372660 G A PLEKHB1 3'UTR 0.24 TCGA-EE-A2MS-06 11 73627595 73627595 C T PAAF1 Silent p.F275F 0.20 TCGA-EE-A2MS-06 11 73785570 73785570 G A C2CD3 Missense_Mutation p.S1560F 0.40 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A2MS-06 11 74676882 74676882 C T SPCS2 Silent p.S91S 0.26 TCGA-EE-A2MS-06 11 75111548 75111548 C T RPS3 Intron 0.25 TCGA-EE-A2MS-06 11 76183643 76183643 C T C11orf30 Silent p.F289F 0.27 TCGA-EE-A2MS-06 11 76371921 76371921 G A LRRC32 Missense_Mutation p.P239L 0.54 tolerated(0.12) benign(0.045) TCGA-EE-A2MS-06 11 77402212 77402212 G A RSF1 Silent p.A964A 0.25 TCGA-EE-A2MS-06 11 82880377 82880377 C T PCF11 Silent p.V1000V 0.32 TCGA-EE-A2MS-06 11 83183773 83183773 C T DLG2 Missense_Mutation p.E781K 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A2MS-06 11 83344270 83344270 G A DLG2 Missense_Mutation p.R642C 0.63 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MS-06 11 86086172 86086172 G A CCDC81 5'UTR 0.56 TCGA-EE-A2MS-06 11 89184968 89184968 G A NOX4 Silent p.L83L 0.57 TCGA-EE-A2MS-06 11 89911178 89911178 C T NAALAD2 Missense_Mutation p.P584L 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 11 89924813 89924813 T C NAALAD2 Silent p.N707N 0.62 TCGA-EE-A2MS-06 11 92087720 92087720 G A FAT3 Nonsense_Mutation p.W814* 0.54 TCGA-EE-A2MS-06 11 93088703 93088703 C T CCDC67 Nonsense_Mutation p.Q66* 0.21 TCGA-EE-A2MS-06 11 93122228 93122228 G A CCDC67 Silent p.R326R 0.32 TCGA-EE-A2MS-06 11 93839186 93839186 C T HEPHL1 Missense_Mutation p.H979Y 0.54 deleterious(0.03) possibly_damaging(0.633) TCGA-EE-A2MS-06 11 94731674 94731674 C T KDM4D Missense_Mutation p.H380Y 0.52 tolerated(0.18) benign(0.005) TCGA-EE-A2MS-06 12 10005967 10005967 C T CLEC2B Missense_Mutation p.D128N 0.20 tolerated(0.1) benign(0.218) TCGA-EE-A2MS-06 12 1005702 1005702 G A WNK1 Missense_Mutation p.A2017T 0.23 tolerated(0.08) possibly_damaging(0.588) TCGA-EE-A2MS-06 12 101520688 101520688 C T ANO4 Missense_Mutation p.S868L 0.81 deleterious(0) benign(0.209) TCGA-EE-A2MS-06 12 101693480 101693480 A T UTP20 Missense_Mutation p.K484M 0.85 tolerated(0.08) benign(0.004) TCGA-EE-A2MS-06 12 102069125 102069125 C T MYBPC1 Silent p.V948V 0.55 TCGA-EE-A2MS-06 12 10277969 10277969 G A CLEC7A Missense_Mutation p.S140F 0.64 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 12 104077010 104077010 C T STAB2 Nonsense_Mutation p.R945* 0.85 TCGA-EE-A2MS-06 12 105282867 105282867 G A SLC41A2 Missense_Mutation p.S275F 0.75 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A2MS-06 12 10541439 10541439 G A KLRK1 5'UTR 0.46 TCGA-EE-A2MS-06 12 106715470 106715470 C T TCP11L2 Silent p.I207I 0.87 TCGA-EE-A2MS-06 12 10782194 10782194 C T STYK1 Silent p.L177L 0.16 TCGA-EE-A2MS-06 12 108634193 108634193 A T WSCD2 Missense_Mutation p.K406I 0.76 deleterious(0) possibly_damaging(0.526) TCGA-EE-A2MS-06 12 108686096 108686096 C T CMKLR1 Missense_Mutation p.S215N 0.73 tolerated(0.34) benign(0.009) TCGA-EE-A2MS-06 12 109537051 109537051 C T UNG Nonsense_Mutation p.Q133* 0.53 TCGA-EE-A2MS-06 12 111351987 111351987 T A MYL2 Intron 0.43 TCGA-EE-A2MS-06 12 112509802 112509802 C T NAA25 Silent p.T311T 0.21 TCGA-EE-A2MS-06 12 112744000 112744000 G A HECTD4 Silent p.P257P 0.50 TCGA-EE-A2MS-06 12 113344832 113344832 C T OAS1 5'UTR 0.72 TCGA-EE-A2MS-06 12 113384623 113384623 G A OAS3 Missense_Mutation p.E238K 0.94 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MS-06 12 113405759 113405759 G A OAS3 Missense_Mutation p.G962R 0.69 tolerated(0.24) possibly_damaging(0.886) TCGA-EE-A2MS-06 12 113633434 113633434 C T IQCD Silent p.K330K 0.31 TCGA-EE-A2MS-06 12 11461663 11461663 C T PRB4 Missense_Mutation p.G85E 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MS-06 12 11546491 11546491 C T PRB2 Missense_Mutation p.R174Q 0.60 tolerated_low_confidence(0.6) unknown(0) TCGA-EE-A2MS-06 12 116429486 116429486 G A MED13L Silent p.P1091P 0.42 TCGA-EE-A2MS-06 12 117217001 117217001 C T RNFT2 Missense_Mutation p.L244F 0.81 deleterious(0) possibly_damaging(0.824) TCGA-EE-A2MS-06 12 118520187 118520187 G A VSIG10 Missense_Mutation p.P137S 0.82 tolerated(0.15) benign(0.129) TCGA-EE-A2MS-06 12 120741694 120741694 C T SIRT4 Silent p.F110F 0.58 TCGA-EE-A2MS-06 12 121432128 121432128 G A HNF1A Missense_Mutation p.G292E 0.34 tolerated(0.08) benign(0.164) TCGA-EE-A2MS-06 12 121434148 121434148 C T HNF1A Missense_Mutation p.P347S 0.74 tolerated(0.67) benign(0.004) TCGA-EE-A2MS-06 12 121682970 121682970 G A CAMKK2 Missense_Mutation p.S509L 0.31 deleterious(0.02) benign(0.15) TCGA-EE-A2MS-06 12 121877844 121877844 G A KDM2B Silent p.I1215I 0.42 TCGA-EE-A2MS-06 12 122691861 122691861 G A B3GNT4 Missense_Mutation p.E355K 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MS-06 12 123285920 123285920 C T CCDC62 Silent p.L409L 0.74 TCGA-EE-A2MS-06 12 123463317 123463317 C T OGFOD2 Silent p.L123L 0.68 TCGA-EE-A2MS-06 12 124857021 124857021 G A NCOR2 Missense_Mutation p.P785L 0.40 unknown(0) TCGA-EE-A2MS-06 12 125834716 125834716 G A TMEM132B Silent p.E257E 0.82 TCGA-EE-A2MS-06 12 129429874 129429874 G A GLT1D1 Missense_Mutation p.D127N 0.80 deleterious(0.01) possibly_damaging(0.741) TCGA-EE-A2MS-06 12 13221609 13221609 C T KIAA1467 Silent p.F444F 0.12 TCGA-EE-A2MS-06 12 132474600 132474600 C A EP400 Missense_Mutation p.A834D 0.35 unknown(0) TCGA-EE-A2MS-06 12 132474601 132474601 C T EP400 Silent p.A834A 0.35 TCGA-EE-A2MS-06 12 132627287 132627287 G A DDX51 Missense_Mutation p.S219L 0.39 tolerated(0.14) benign(0.008) TCGA-EE-A2MS-06 12 133438112 133438112 G A CHFR Missense_Mutation p.S243L 0.38 tolerated(0.09) benign(0.002) TCGA-EE-A2MS-06 12 13716179 13716179 C T GRIN2B Missense_Mutation p.M1331I 0.15 tolerated(0.13) benign(0.002) TCGA-EE-A2MS-06 12 13716751 13716751 C T GRIN2B Missense_Mutation p.E1141K 0.55 deleterious(0.02) possibly_damaging(0.738) TCGA-EE-A2MS-06 12 14631255 14631255 C T ATF7IP Silent p.P982P 0.11 TCGA-EE-A2MS-06 12 14804439 14804439 G A GUCY2C Nonsense_Mutation p.Q538* 0.28 TCGA-EE-A2MS-06 12 15262375 15262375 C T RERG Missense_Mutation p.G90E 0.12 tolerated(0.35) benign(0.019) TCGA-EE-A2MS-06 12 18237579 18237579 G A RERGL Silent p.S69S 0.68 TCGA-EE-A2MS-06 12 18238594 18238594 C T RERGL Missense_Mutation p.R49K 0.79 deleterious(0.02) benign(0.004) TCGA-EE-A2MS-06 12 18891154 18891154 C T CAPZA3 5'UTR 0.79 TCGA-EE-A2MS-06 12 18892056 18892056 G A CAPZA3 Missense_Mutation p.G285E 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MS-06 12 1943902 1943902 C T LRTM2 3'UTR 0.52 TCGA-EE-A2MS-06 12 21294544 21294544 G A SLCO1B1 Silent p.E12E 0.38 TCGA-EE-A2MS-06 12 21654863 21654863 C T GOLT1B Silent p.I2I 0.85 TCGA-EE-A2MS-06 12 21919284 21919284 C T KCNJ8 Silent p.R216R 0.14 TCGA-EE-A2MS-06 12 21970176 21970176 C T ABCC9 Silent p.V1279V 0.27 TCGA-EE-A2MS-06 12 24048856 24048856 G A SOX5 Silent p.L47L 0.16 TCGA-EE-A2MS-06 12 24736652 24736652 G A LINC00477 RNA 0.17 TCGA-EE-A2MS-06 12 24985736 24985736 C T BCAT1 Missense_Mutation p.G334E 0.30 tolerated(1) benign(0.001) TCGA-EE-A2MS-06 12 24989496 24989496 G A BCAT1 Silent p.I296I 0.70 TCGA-EE-A2MS-06 12 274933 274933 G A IQSEC3 Missense_Mutation p.G950S 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2MS-06 12 27820188 27820188 C T PPFIBP1 Missense_Mutation p.P378S 0.56 tolerated(0.67) benign(0.003) TCGA-EE-A2MS-06 12 27849684 27849684 C T REP15 Silent p.F63F 0.45 TCGA-EE-A2MS-06 12 27849697 27849697 C T REP15 Nonsense_Mutation p.Q68* 0.40 TCGA-EE-A2MS-06 12 3040401 3040401 C T TULP3 Nonsense_Mutation p.Q231* 0.80 TCGA-EE-A2MS-06 12 30867998 30867998 G A CAPRIN2 Missense_Mutation p.P799S 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A2MS-06 12 31254895 31254895 C T DDX11 Silent p.G727G 0.47 TCGA-EE-A2MS-06 12 31269354 31269354 G A RP11-551L14.1 RNA 0.29 TCGA-EE-A2MS-06 12 3129854 3129854 C T TEAD4 Missense_Mutation p.P213L 0.15 tolerated(0.33) benign(0.024) TCGA-EE-A2MS-06 12 32481426 32481426 C T BICD1 Silent p.S679S 0.21 TCGA-EE-A2MS-06 12 32481427 32481427 C T BICD1 Silent p.L680L 0.21 TCGA-EE-A2MS-06 12 32974422 32974422 G A PKP2 Silent p.P671P 0.44 TCGA-EE-A2MS-06 12 32993972 32993972 C T PKP2 Missense_Mutation p.G560R 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 12 33031940 33031940 G A PKP2 Missense_Mutation p.P84S 0.26 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 12 33535403 33535403 C T SYT10 Silent p.R417R 0.29 TCGA-EE-A2MS-06 12 33592443 33592443 C T SYT10 Silent p.K5K 0.27 TCGA-EE-A2MS-06 12 40668769 40668769 A - LRRK2 Frame_Shift_Del p.K639Rfs*15 0.23 TCGA-EE-A2MS-06 12 40699676 40699676 G A LRRK2 Silent p.G1289G 0.43 TCGA-EE-A2MS-06 12 42523607 42523607 G A GXYLT1 Missense_Mutation p.P90S 0.41 tolerated(0.07) benign(0.346) TCGA-EE-A2MS-06 12 44148400 44148400 C G PUS7L Missense_Mutation p.D217H 0.15 deleterious(0.03) possibly_damaging(0.77) TCGA-EE-A2MS-06 12 44148638 44148638 C T PUS7L Silent p.L137L 0.16 TCGA-EE-A2MS-06 12 45173792 45173792 C T NELL2 Missense_Mutation p.E167K 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 12 46320217 46320217 A C SCAF11 Nonsense_Mutation p.Y1089* 0.20 TCGA-EE-A2MS-06 12 46582833 46582833 C T SLC38A1 Missense_Mutation p.G462R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 12 46598346 46598346 G A SLC38A1 Missense_Mutation p.S225F 0.17 deleterious(0) probably_damaging(0.916) TCGA-EE-A2MS-06 12 47162189 47162189 C T SLC38A4 Silent p.G482G 0.14 TCGA-EE-A2MS-06 12 47163181 47163181 G A SLC38A4 Missense_Mutation p.P444S 0.21 tolerated(0.11) benign(0.088) TCGA-EE-A2MS-06 12 47170779 47170779 C T SLC38A4 Missense_Mutation p.R361Q 0.21 tolerated(0.58) benign(0.221) TCGA-EE-A2MS-06 12 4737380 4737380 G A AKAP3 Missense_Mutation p.P230S 0.28 tolerated(0.16) benign(0.065) TCGA-EE-A2MS-06 12 47471889 47471889 C T AMIGO2 Silent p.E299E 0.60 TCGA-EE-A2MS-06 12 47471912 47471912 G A AMIGO2 Missense_Mutation p.R292C 0.59 deleterious(0.01) possibly_damaging(0.614) TCGA-EE-A2MS-06 12 47629193 47629193 C T PCED1B Missense_Mutation p.P116L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 12 48134386 48134386 G A RAPGEF3 Intron 0.71 TCGA-EE-A2MS-06 12 48361999 48361999 C T TMEM106C Missense_Mutation p.S247F 0.17 tolerated(0.07) benign(0.052) TCGA-EE-A2MS-06 12 4870139 4870139 G A GALNT8 Missense_Mutation p.G397R 0.65 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 12 48919812 48919812 G A OR8S1 Missense_Mutation p.G133E 0.05 tolerated(0.24) benign(0.087) TCGA-EE-A2MS-06 12 48963761 48963761 G A LALBA Missense_Mutation p.P15S 0.79 tolerated(0.12) benign(0.033) TCGA-EE-A2MS-06 12 48963762 48963762 G A LALBA Silent p.F14F 0.79 TCGA-EE-A2MS-06 12 49065687 49065687 G A KANSL2 Missense_Mutation p.R202C 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 12 4920691 4920691 G A KCNA6 Missense_Mutation p.G495E 0.18 tolerated_low_confidence(0.15) benign(0.077) TCGA-EE-A2MS-06 12 4920712 4920712 C T KCNA6 Missense_Mutation p.P502L 0.64 tolerated_low_confidence(0.7) benign(0.004) TCGA-EE-A2MS-06 12 4920740 4920740 C T KCNA6 Silent p.S511S 0.65 TCGA-EE-A2MS-06 12 49258632 49258632 C T RND1 Missense_Mutation p.E48K 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A2MS-06 12 49390542 49390542 C T DDN Missense_Mutation p.G706E 0.61 tolerated_low_confidence(0.05) benign(0.018) TCGA-EE-A2MS-06 12 49436535 49436535 G A KMT2D Missense_Mutation p.P1924L 0.26 probably_damaging(0.918) TCGA-EE-A2MS-06 12 49944054 49944054 C T KCNH3 Silent p.Y620Y 0.13 TCGA-EE-A2MS-06 12 49994666 49994666 C T FAM186B Missense_Mutation p.E253K 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MS-06 12 49994667 49994667 C T FAM186B Silent p.K252K 0.14 TCGA-EE-A2MS-06 12 50026881 50026881 C T PRPF40B Missense_Mutation p.P145S 0.26 deleterious(0) benign(0.012) TCGA-EE-A2MS-06 12 51390708 51390708 G A SLC11A2 Silent p.F270F 0.86 TCGA-EE-A2MS-06 12 51753045 51753045 G A GALNT6 Silent p.S413S 0.57 TCGA-EE-A2MS-06 12 52200906 52200906 C T SCN8A Missense_Mutation p.S1879F 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MS-06 12 52307413 52307413 C T ACVRL1 Silent p.A128A 0.22 TCGA-EE-A2MS-06 12 52309924 52309924 A T ACVRL1 Missense_Mutation p.I385F 0.67 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2MS-06 12 52309926 52309926 C T ACVRL1 Silent p.I385I 0.68 TCGA-EE-A2MS-06 12 52470668 52470668 C T C12orf44 Silent p.I117I 0.24 TCGA-EE-A2MS-06 12 52681871 52681871 C T KRT81 Missense_Mutation p.S266N 0.15 tolerated(0.24) benign(0.168) TCGA-EE-A2MS-06 12 52709692 52709692 T C KRT83 Missense_Mutation p.E416G 0.64 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MS-06 12 52886819 52886819 C T KRT6A Missense_Mutation p.G52R 0.15 tolerated(0.08) unknown(0) TCGA-EE-A2MS-06 12 52939367 52939367 G A KRT71 Missense_Mutation p.P448S 0.69 tolerated(0.2) benign(0.009) TCGA-EE-A2MS-06 12 52967412 52967412 G A KRT74 Silent p.L50L 0.16 TCGA-EE-A2MS-06 12 52981575 52981575 C T KRT72 Missense_Mutation p.D384N 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 12 53038735 53038735 G A KRT2 3'UTR 0.17 TCGA-EE-A2MS-06 12 53045694 53045694 C T KRT2 Missense_Mutation p.G78E 0.21 deleterious(0) unknown(0) TCGA-EE-A2MS-06 12 53170524 53170524 C T KRT76 Silent p.R184R 0.12 TCGA-EE-A2MS-06 12 53189292 53189292 G A KRT3 Missense_Mutation p.L179F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 12 53242410 53242410 G A KRT78 Missense_Mutation p.P102L 0.63 deleterious(0) possibly_damaging(0.894) TCGA-EE-A2MS-06 12 53242527 53242527 C T KRT78 Missense_Mutation p.G63E 0.35 deleterious(0.02) benign(0.006) TCGA-EE-A2MS-06 12 53345998 53345998 G A KRT18 Silent p.E348E 0.44 TCGA-EE-A2MS-06 12 53452367 53452367 C T TENC1 Missense_Mutation p.P423S 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 12 53685836 53685836 C T ESPL1 Silent p.S1920S 0.16 TCGA-EE-A2MS-06 12 53848587 53848587 G A PCBP2 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.688) TCGA-EE-A2MS-06 12 54423488 54423488 G A HOXC6 Silent p.R150R 0.69 TCGA-EE-A2MS-06 12 54427054 54427054 C T HOXC5 Missense_Mutation p.P50S 0.76 tolerated(0.44) benign(0.006) TCGA-EE-A2MS-06 12 55420282 55420282 G A NEUROD4 Nonsense_Mutation p.W20* 0.07 TCGA-EE-A2MS-06 12 55421163 55421163 G A NEUROD4 Missense_Mutation p.D314N 0.07 deleterious(0) possibly_damaging(0.501) TCGA-EE-A2MS-06 12 55523961 55523961 G A OR9K2 Missense_Mutation p.G137R 0.06 deleterious(0.02) possibly_damaging(0.643) TCGA-EE-A2MS-06 12 55641396 55641396 G T OR6C74 Nonsense_Mutation p.E109* 0.08 TCGA-EE-A2MS-06 12 55714535 55714535 C T OR6C1 Missense_Mutation p.S51F 0.84 tolerated_low_confidence(0.07) possibly_damaging(0.526) TCGA-EE-A2MS-06 12 55820236 55820236 G A OR6C76 Missense_Mutation p.E67K 0.06 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 12 55846726 55846726 G A OR6C2 Missense_Mutation p.M243I 0.09 tolerated_low_confidence(0.14) benign(0.279) TCGA-EE-A2MS-06 12 55846911 55846911 G A OR6C2 Missense_Mutation p.R305K 0.13 tolerated_low_confidence(0.58) benign(0.007) TCGA-EE-A2MS-06 12 56232377 56232377 G A MMP19 Intron 0.10 TCGA-EE-A2MS-06 12 56236179 56236179 C T MMP19 Missense_Mutation p.G44E 0.09 tolerated(0.59) benign(0.088) TCGA-EE-A2MS-06 12 56553498 56553498 G A MYL6 Silent p.G53G 0.75 TCGA-EE-A2MS-06 12 56558273 56558273 C T SMARCC2 Missense_Mutation p.G1128S 0.52 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2MS-06 12 56575616 56575616 G A SMARCC2 Missense_Mutation p.H238Y 0.37 deleterious(0.01) benign(0.152) TCGA-EE-A2MS-06 12 56722378 56722378 G A PAN2 Silent p.S110S 0.06 TCGA-EE-A2MS-06 12 57111330 57111330 G A NACA Intron 0.17 TCGA-EE-A2MS-06 12 57112468 57112468 G A NACA Intron 0.11 TCGA-EE-A2MS-06 12 57112564 57112564 G A NACA Intron 0.09 TCGA-EE-A2MS-06 12 57113260 57113260 G A NACA Intron 0.11 TCGA-EE-A2MS-06 12 57114431 57114431 G A NACA Missense_Mutation p.P295S 0.09 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-EE-A2MS-06 12 57114463 57114463 G A NACA Missense_Mutation p.P284L 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.851) TCGA-EE-A2MS-06 12 57406176 57406176 G A TAC3 Missense_Mutation p.P118L 0.76 deleterious(0.05) benign(0) TCGA-EE-A2MS-06 12 57406177 57406177 G A TAC3 Missense_Mutation p.P118S 0.76 tolerated(0.25) benign(0.015) TCGA-EE-A2MS-06 12 57423625 57423625 C T MYO1A Missense_Mutation p.G875R 0.74 tolerated(0.46) benign(0.192) TCGA-EE-A2MS-06 12 57423650 57423650 G A MYO1A Silent p.P866P 0.08 TCGA-EE-A2MS-06 12 57424075 57424075 G A MYO1A Missense_Mutation p.S837F 0.11 deleterious(0.01) possibly_damaging(0.862) TCGA-EE-A2MS-06 12 57485152 57485152 C T NAB2 Missense_Mutation p.P110S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 12 57490249 57490249 G A STAT6 3'UTR 0.70 TCGA-EE-A2MS-06 12 57589078 57589078 C T LRP1 Missense_Mutation p.S2778F 0.12 possibly_damaging(0.776) TCGA-EE-A2MS-06 12 57600321 57600321 C T LRP1 Missense_Mutation p.P3886S 0.20 benign(0.063) TCGA-EE-A2MS-06 12 57648850 57648850 G A R3HDM2 Silent p.T879T 0.10 TCGA-EE-A2MS-06 12 57963333 57963333 G A KIF5A Silent p.K328K 0.08 TCGA-EE-A2MS-06 12 57994597 57994597 C T PIP4K2C Silent p.L273L 0.07 TCGA-EE-A2MS-06 12 58197128 58197128 A C AVIL Missense_Mutation p.S622A 0.06 deleterious(0) benign(0.424) TCGA-EE-A2MS-06 12 58217423 58217423 C T CTDSP2 Missense_Mutation p.D260N 0.83 tolerated(0.29) benign(0.063) TCGA-EE-A2MS-06 12 58345576 58345576 C T XRCC6BP1 Silent p.A117A 0.06 TCGA-EE-A2MS-06 12 6101035 6101035 G A VWF Missense_Mutation p.P2250S 0.67 tolerated(0.42) probably_damaging(0.96) TCGA-EE-A2MS-06 12 6103062 6103062 C T VWF Silent p.G2188G 0.09 TCGA-EE-A2MS-06 12 6174349 6174349 C T VWF Missense_Mutation p.R416Q 0.59 tolerated(0.44) benign(0.117) TCGA-EE-A2MS-06 12 6309628 6309628 C T CD9 5'UTR 0.67 TCGA-EE-A2MS-06 12 6463648 6463648 G A SCNN1A Missense_Mutation p.P498L 0.22 deleterious(0.01) benign(0.315) TCGA-EE-A2MS-06 12 66703831 66703831 C T HELB Missense_Mutation p.P375S 0.08 tolerated(0.45) benign(0.14) TCGA-EE-A2MS-06 12 66707833 66707833 C T HELB Missense_Mutation p.S583L 0.10 deleterious(0.03) benign(0.313) TCGA-EE-A2MS-06 12 66709072 66709072 C T HELB Missense_Mutation p.L637F 0.08 tolerated(0.08) possibly_damaging(0.457) TCGA-EE-A2MS-06 12 66717914 66717914 C T HELB Missense_Mutation p.P817S 0.13 tolerated(0.83) benign(0.005) TCGA-EE-A2MS-06 12 66849287 66849287 G A GRIP1 Missense_Mutation p.S367F 0.15 deleterious(0.03) probably_damaging(0.935) TCGA-EE-A2MS-06 12 6700950 6700950 G A CHD4 Silent p.A1044A 0.23 TCGA-EE-A2MS-06 12 67696296 67696296 C T CAND1 Silent p.Y398Y 0.08 TCGA-EE-A2MS-06 12 68716926 68716926 G A MDM1 Missense_Mutation p.P243L 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 12 69264142 69264142 G A CPM Missense_Mutation p.P157S 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 12 6927708 6927708 G A CD4 Silent p.R426R 0.68 TCGA-EE-A2MS-06 12 69652685 69652685 T C CPSF6 Missense_Mutation p.L337P 0.76 tolerated(0.06) unknown(0) TCGA-EE-A2MS-06 12 6973281 6973281 C T USP5 Silent p.P722P 0.13 TCGA-EE-A2MS-06 12 70048710 70048710 C T BEST3 Missense_Mutation p.E662K 0.10 deleterious_low_confidence(0.01) benign(0.001) TCGA-EE-A2MS-06 12 70048913 70048913 C T BEST3 Missense_Mutation p.G594E 0.79 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MS-06 12 70065290 70065290 C T BEST3 Missense_Mutation p.D340N 0.10 deleterious(0.02) benign(0.177) TCGA-EE-A2MS-06 12 70960288 70960288 C T PTPRB Silent p.K1277K 0.09 TCGA-EE-A2MS-06 12 71016424 71016424 C T PTPRB Missense_Mutation p.G152S 0.29 tolerated_low_confidence(0.45) benign(0.047) TCGA-EE-A2MS-06 12 71148343 71148343 C T PTPRR Intron 0.65 TCGA-EE-A2MS-06 12 71526564 71526564 C T TSPAN8 Missense_Mutation p.G162E 0.14 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MS-06 12 7177477 7177477 T A C1S Missense_Mutation p.I530N 0.72 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 12 71960659 71960659 C T LGR5 Missense_Mutation p.T346I 0.12 tolerated(0.08) benign(0.2) TCGA-EE-A2MS-06 12 7252584 7252584 C T C1RL Missense_Mutation p.G177S 0.14 tolerated(0.6) benign(0.001) TCGA-EE-A2MS-06 12 73012702 73012702 G A TRHDE Missense_Mutation p.E740K 0.61 tolerated(0.46) benign(0.004) TCGA-EE-A2MS-06 12 7476965 7476965 G A ACSM4 Missense_Mutation p.G469S 0.15 deleterious(0.02) possibly_damaging(0.593) TCGA-EE-A2MS-06 12 7527914 7527914 G A CD163L1 Silent p.P988P 0.14 TCGA-EE-A2MS-06 12 7531734 7531734 G A CD163L1 Silent p.I737I 0.11 TCGA-EE-A2MS-06 12 75895453 75895453 G A GLIPR1 3'UTR 0.25 TCGA-EE-A2MS-06 12 7632536 7632536 A T CD163 Missense_Mutation p.F1134I 0.19 tolerated(0.41) benign(0.023) TCGA-EE-A2MS-06 12 76424916 76424916 T C PHLDA1 Silent p.Q202Q 0.30 TCGA-EE-A2MS-06 12 772722 772722 C T NINJ2 5'UTR 0.60 TCGA-EE-A2MS-06 12 7802203 7802203 C T APOBEC1 Silent p.T217T 0.11 TCGA-EE-A2MS-06 12 7805127 7805127 C T APOBEC1 Missense_Mutation p.A117T 0.20 deleterious(0.01) possibly_damaging(0.687) TCGA-EE-A2MS-06 12 7882189 7882189 C T CLEC4C 3'UTR 0.74 TCGA-EE-A2MS-06 12 80729901 80729901 C T OTOGL Silent p.C1518C 0.28 TCGA-EE-A2MS-06 12 81719572 81719572 G A PPFIA2 Nonsense_Mutation p.R876* 0.87 TCGA-EE-A2MS-06 12 8201356 8201356 G A FOXJ2 Missense_Mutation p.R430Q 0.15 tolerated(0.16) probably_damaging(0.974) TCGA-EE-A2MS-06 12 8376722 8376722 C T FAM90A1 Silent p.P71P 0.11 TCGA-EE-A2MS-06 12 8687365 8687365 C T CLEC4E Missense_Mutation p.E177K 0.68 deleterious(0.05) probably_damaging(1) TCGA-EE-A2MS-06 12 8988120 8988120 G A A2ML1 Silent p.R167R 0.09 TCGA-EE-A2MS-06 12 9008104 9008104 G A A2ML1 Splice_Site p.X922_splice 0.18 TCGA-EE-A2MS-06 12 91358040 91358040 G A EPYC Missense_Mutation p.R288C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 12 92816326 92816326 C T CLLU1OS Missense_Mutation p.E47K 0.48 tolerated_low_confidence(0.62) possibly_damaging(0.486) TCGA-EE-A2MS-06 12 93139298 93139298 G A PLEKHG7 Silent p.L82L 0.78 TCGA-EE-A2MS-06 12 95451609 95451609 G A NR2C1 Missense_Mutation p.S197F 0.34 tolerated(0.4) possibly_damaging(0.794) TCGA-EE-A2MS-06 13 101710319 101710319 C T NALCN Silent p.R1665R 0.36 TCGA-EE-A2MS-06 13 101717859 101717859 G A NALCN Silent p.L1501L 0.35 TCGA-EE-A2MS-06 13 106124949 106124949 G A DAOA Missense_Mutation p.E66K 0.65 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A2MS-06 13 109707928 109707928 C T MYO16 Missense_Mutation p.S1085L 0.56 tolerated(0.06) benign(0.06) TCGA-EE-A2MS-06 13 111102714 111102714 C T COL4A2 Missense_Mutation p.P418S 0.57 benign(0.253) TCGA-EE-A2MS-06 13 113140352 113140352 G A TUBGCP3 Silent p.L893L 0.91 TCGA-EE-A2MS-06 13 114766341 114766341 G A RASA3 Missense_Mutation p.R604C 0.65 tolerated(0.12) benign(0.017) TCGA-EE-A2MS-06 13 19751162 19751162 C T TUBA3C Missense_Mutation p.G321R 0.52 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A2MS-06 13 20024470 20024470 C T TPTE2 Missense_Mutation p.D273N 0.34 tolerated(0.16) benign(0.136) TCGA-EE-A2MS-06 13 23905533 23905533 G A SACS Missense_Mutation p.P4161L 0.27 probably_damaging(0.997) TCGA-EE-A2MS-06 13 23907771 23907771 G A SACS Missense_Mutation p.S3415F 0.32 probably_damaging(0.993) TCGA-EE-A2MS-06 13 23915461 23915461 G A SACS Missense_Mutation p.L852F 0.25 possibly_damaging(0.663) TCGA-EE-A2MS-06 13 23928006 23928006 G A SACS Silent p.F701F 0.39 TCGA-EE-A2MS-06 13 25671362 25671362 C T PABPC3 Silent p.S342S 0.36 TCGA-EE-A2MS-06 13 25671363 25671363 C T PABPC3 Missense_Mutation p.P343S 0.36 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A2MS-06 13 26975749 26975749 C T CDK8 Silent p.T419T 0.30 TCGA-EE-A2MS-06 13 27256995 27256995 C T WASF3 Missense_Mutation p.S412F 0.40 deleterious(0.02) benign(0.347) TCGA-EE-A2MS-06 13 27333482 27333482 G A GPR12 Silent p.L161L 0.46 TCGA-EE-A2MS-06 13 28155802 28155802 C T LNX2 Silent p.Q13Q 0.56 TCGA-EE-A2MS-06 13 28498598 28498598 G A PDX1 Silent p.E204E 0.29 TCGA-EE-A2MS-06 13 28519381 28519381 C T ATP5EP2 5'UTR 0.50 TCGA-EE-A2MS-06 13 29287571 29287571 G A SLC46A3 Silent p.F102F 0.35 TCGA-EE-A2MS-06 13 29600443 29600443 C T MTUS2 Silent p.L546L 0.35 TCGA-EE-A2MS-06 13 31495964 31495964 G A MEDAG Silent p.K256K 0.33 TCGA-EE-A2MS-06 13 32376299 32376299 G A RXFP2 Nonsense_Mutation p.W674* 0.40 TCGA-EE-A2MS-06 13 32735336 32735336 C T FRY Nonsense_Mutation p.R614* 0.34 TCGA-EE-A2MS-06 13 32841337 32841337 C T FRY Silent p.P2659P 0.33 TCGA-EE-A2MS-06 13 32841341 32841341 C T FRY Missense_Mutation p.P2661S 0.33 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A2MS-06 13 33273881 33273881 C T PDS5B Missense_Mutation p.P539S 0.30 tolerated(0.11) benign(0.19) TCGA-EE-A2MS-06 13 35756549 35756549 C T NBEA Missense_Mutation p.S1572L 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 13 36124641 36124641 G A NBEA Missense_Mutation p.G2205R 0.28 deleterious(0) possibly_damaging(0.828) TCGA-EE-A2MS-06 13 36167498 36167498 G A NBEA Missense_Mutation p.D2404N 0.42 tolerated(0.08) benign(0.001) TCGA-EE-A2MS-06 13 37269294 37269294 C T SERTM1 Silent p.L27L 0.45 TCGA-EE-A2MS-06 13 38171377 38171377 C T POSTN Silent p.K54K 0.27 TCGA-EE-A2MS-06 13 38211653 38211653 G A TRPC4 Missense_Mutation p.S779L 0.34 tolerated(0.33) benign(0.001) TCGA-EE-A2MS-06 13 38213432 38213432 C T TRPC4 Missense_Mutation p.R700Q 0.40 tolerated(0.09) benign(0.209) TCGA-EE-A2MS-06 13 38320211 38320211 C T TRPC4 Missense_Mutation p.D254N 0.39 tolerated(0.14) benign(0.315) TCGA-EE-A2MS-06 13 39263123 39263123 C T FREM2 Silent p.L548L 0.36 TCGA-EE-A2MS-06 13 39451349 39451349 C T FREM2 Silent p.F2880F 0.37 TCGA-EE-A2MS-06 13 40175210 40175210 C T LHFP Silent p.R48R 0.24 TCGA-EE-A2MS-06 13 40175211 40175211 C T LHFP Missense_Mutation p.R48Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 13 41767908 41767908 G A KBTBD7 Silent p.S162S 0.39 TCGA-EE-A2MS-06 13 42041041 42041041 C T RGCC Silent p.L106L 0.43 TCGA-EE-A2MS-06 13 46543368 46543368 G A ZC3H13 Missense_Mutation p.P1104L 0.24 unknown(0) TCGA-EE-A2MS-06 13 46725188 46725188 A C LCP1 Silent p.G255G 0.44 TCGA-EE-A2MS-06 13 48669172 48669172 C T MED4 Missense_Mutation p.G15R 0.21 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A2MS-06 13 50042072 50042072 C T SETDB2 Missense_Mutation p.S106F 0.14 tolerated(0.19) benign(0.009) TCGA-EE-A2MS-06 13 51935993 51935993 C G SERPINE3 Missense_Mutation p.R379G 0.27 deleterious(0.04) possibly_damaging(0.669) TCGA-EE-A2MS-06 13 52548897 52548897 G A ATP7B Silent p.T153T 0.24 TCGA-EE-A2MS-06 13 52604614 52604614 C T UTP14C Silent p.N558N 0.40 TCGA-EE-A2MS-06 13 52667313 52667313 T C NEK5 Missense_Mutation p.Y362C 0.39 deleterious(0.02) benign(0.086) TCGA-EE-A2MS-06 13 53418792 53418792 C A PCDH8 Missense_Mutation p.G1039V 0.40 tolerated(0.21) possibly_damaging(0.669) TCGA-EE-A2MS-06 13 60565337 60565337 G A DIAPH3 Missense_Mutation p.S439F 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 13 61986204 61986204 G A PCDH20 Silent p.L676L 0.57 TCGA-EE-A2MS-06 13 75861030 75861030 G A TBC1D4 Silent p.L1265L 0.52 TCGA-EE-A2MS-06 13 86370118 86370118 G A SLITRK6 Missense_Mutation p.P176S 0.29 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 13 93518683 93518683 G A GPC5 Silent p.G570G 0.46 TCGA-EE-A2MS-06 13 95735479 95735479 G A ABCC4 Silent p.P867P 0.27 TCGA-EE-A2MS-06 13 96251628 96251628 C T DZIP1 Missense_Mutation p.E510K 0.42 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A2MS-06 13 96506591 96506591 A G UGGT2 Silent p.L1383L 0.38 TCGA-EE-A2MS-06 13 99061620 99061620 C T FARP1 Silent p.S481S 0.39 TCGA-EE-A2MS-06 13 99515687 99515687 G A DOCK9 Silent p.I1134I 0.31 TCGA-EE-A2MS-06 14 100344907 100344907 C T EML1 Missense_Mutation p.R176C 0.79 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 14 101531703 101531703 C T MIR409 RNA 0.20 TCGA-EE-A2MS-06 14 102468007 102468007 C T DYNC1H1 Missense_Mutation p.P1511S 0.68 probably_damaging(0.998) TCGA-EE-A2MS-06 14 102548767 102548767 G A HSP90AA1 Silent p.N712N 0.88 TCGA-EE-A2MS-06 14 102792644 102792644 C T ZNF839 Missense_Mutation p.S204F 0.50 deleterious(0.01) benign(0.333) TCGA-EE-A2MS-06 14 102891506 102891506 C T TECPR2 Missense_Mutation p.P277S 0.70 tolerated(0.82) benign(0) TCGA-EE-A2MS-06 14 102894633 102894633 C T TECPR2 Missense_Mutation p.S333L 0.73 deleterious(0) possibly_damaging(0.79) TCGA-EE-A2MS-06 14 103805664 103805664 C T EIF5 Silent p.F300F 0.74 TCGA-EE-A2MS-06 14 105355926 105355926 C T CEP170B Intron 0.50 TCGA-EE-A2MS-06 14 105618331 105618331 G A JAG2 Missense_Mutation p.P328L 0.29 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MS-06 14 105618332 105618332 G A JAG2 Missense_Mutation p.P328S 0.29 deleterious(0) benign(0.427) TCGA-EE-A2MS-06 14 106406096 106406096 C T IGHV6-1 5'UTR 0.64 TCGA-EE-A2MS-06 14 106963108 106963108 C T IGHV1-45 Silent p.Q58Q 0.33 TCGA-EE-A2MS-06 14 107078526 107078526 C T IGHV1-58 Nonsense_Mutation p.W66* 0.77 TCGA-EE-A2MS-06 14 19378093 19378093 G A OR11H12 Missense_Mutation p.G167E 0.07 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 14 19553545 19553545 G A POTEG Silent p.V43V 0.04 TCGA-EE-A2MS-06 14 20010208 20010208 G A POTEM Missense_Mutation p.S317L 0.37 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A2MS-06 14 20020092 20020092 C T POTEM Silent p.V43V 0.14 TCGA-EE-A2MS-06 14 20215589 20215589 G A OR4Q3 Translation_Start_Site p.M1? 0.11 deleterious(0.01) benign(0.023) TCGA-EE-A2MS-06 14 20215639 20215639 C T OR4Q3 Missense_Mutation p.S18L 0.08 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A2MS-06 14 20248886 20248886 C T OR4M1 Silent p.I135I 0.14 TCGA-EE-A2MS-06 14 20344654 20344654 C T OR4K2 Silent p.F76F 0.15 TCGA-EE-A2MS-06 14 20404381 20404381 G A OR4K1 Missense_Mutation p.E186K 0.06 tolerated(1) benign(0.006) TCGA-EE-A2MS-06 14 20502760 20502760 G A OR4K13 Missense_Mutation p.S53L 0.45 tolerated(0.29) benign(0.02) TCGA-EE-A2MS-06 14 20585856 20585856 C T OR4K17 Silent p.L97L 0.43 TCGA-EE-A2MS-06 14 20691874 20691874 C T OR11H6 Silent p.F2F 0.41 TCGA-EE-A2MS-06 14 20848177 20848177 G A TEP1 Missense_Mutation p.T1680I 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 14 20852304 20852304 G A TEP1 Missense_Mutation p.P1143S 0.46 tolerated(0.89) benign(0.016) TCGA-EE-A2MS-06 14 21490298 21490298 C T NDRG2 Silent p.Q89Q 0.52 TCGA-EE-A2MS-06 14 21795916 21795916 G A RPGRIP1 Missense_Mutation p.D949N 0.47 tolerated(0.05) benign(0.03) TCGA-EE-A2MS-06 14 22134223 22134223 G A OR4E2 Silent p.T309T 0.48 TCGA-EE-A2MS-06 14 22237194 22237194 G A TRAV6 Missense_Mutation p.E91K 0.47 deleterious(0) benign(0.293) TCGA-EE-A2MS-06 14 22265546 22265546 G A TRAV8-1 5'UTR 0.50 TCGA-EE-A2MS-06 14 22265547 22265547 G A TRAV8-1 5'UTR 0.54 TCGA-EE-A2MS-06 14 22265623 22265623 G A TRAV8-1 Missense_Mutation p.M11I 0.33 tolerated(0.86) benign(0.003) TCGA-EE-A2MS-06 14 22315291 22315291 A G TRAV8-2 Missense_Mutation p.K77E 0.38 tolerated(0.21) benign(0.03) TCGA-EE-A2MS-06 14 22433746 22433746 C T TRAV12-3 Missense_Mutation p.S4F 0.16 tolerated(0.71) unknown(0) TCGA-EE-A2MS-06 14 22447119 22447119 G A TRAV8-6 Missense_Mutation p.E34K 0.35 deleterious(0.02) possibly_damaging(0.84) TCGA-EE-A2MS-06 14 22459135 22459135 C T TRAV16 Missense_Mutation p.A96V 0.36 tolerated(0.71) benign(0.112) TCGA-EE-A2MS-06 14 22554709 22554709 G A TRAV23DV6 5'UTR 0.16 TCGA-EE-A2MS-06 14 22554731 22554731 G A TRAV23DV6 Translation_Start_Site p.M1? 0.53 deleterious(0) possibly_damaging(0.798) TCGA-EE-A2MS-06 14 22671026 22671026 G A TRAV26-2 Missense_Mutation p.E31K 0.49 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MS-06 14 22690332 22690332 C T TRAV35 Silent p.S97S 0.44 TCGA-EE-A2MS-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.51 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A2MS-06 14 23345251 23345251 C T LRP10 Missense_Mutation p.A365V 0.28 tolerated(0.17) benign(0.002) TCGA-EE-A2MS-06 14 23588290 23588290 C T CEBPE Missense_Mutation p.G4E 0.46 deleterious(0.03) benign(0.05) TCGA-EE-A2MS-06 14 23588291 23588291 C T CEBPE Missense_Mutation p.G4R 0.42 deleterious(0.02) benign(0.16) TCGA-EE-A2MS-06 14 23816342 23816342 G A SLC22A17 Silent p.L432L 0.21 TCGA-EE-A2MS-06 14 23818558 23818558 G A SLC22A17 Missense_Mutation p.S150F 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MS-06 14 23842583 23842583 G A IL25 Missense_Mutation p.A86T 0.19 deleterious(0) possibly_damaging(0.825) TCGA-EE-A2MS-06 14 23883043 23883043 C T MYH7 Silent p.E1905E 0.44 TCGA-EE-A2MS-06 14 23884279 23884279 G A MYH7 Silent p.A1828A 0.16 TCGA-EE-A2MS-06 14 23884991 23884991 C T MYH7 Silent p.K1668K 0.48 TCGA-EE-A2MS-06 14 23900656 23900656 C T MYH7 Missense_Mutation p.G256E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 14 24114078 24114078 C T DHRS2 Silent p.I243I 0.17 TCGA-EE-A2MS-06 14 24653526 24653526 C T IPO4 Missense_Mutation p.D579N 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 14 24654167 24654167 G A IPO4 Silent p.Y476Y 0.24 TCGA-EE-A2MS-06 14 24724013 24724013 G A TGM1 Missense_Mutation p.P649S 0.50 tolerated(0.44) probably_damaging(0.912) TCGA-EE-A2MS-06 14 24731294 24731294 G A TGM1 Missense_Mutation p.R89W 0.18 deleterious(0) benign(0.402) TCGA-EE-A2MS-06 14 24774214 24774214 C T NOP9 Silent p.T608T 0.18 TCGA-EE-A2MS-06 14 24806151 24806151 C T RIPK3 Missense_Mutation p.G426R 0.23 tolerated(0.1) possibly_damaging(0.618) TCGA-EE-A2MS-06 14 24845681 24845681 C T NFATC4 Silent p.P809P 0.45 TCGA-EE-A2MS-06 14 24884614 24884614 C T NYNRIN Missense_Mutation p.S1220F 0.41 deleterious(0) possibly_damaging(0.83) TCGA-EE-A2MS-06 14 24886130 24886130 C T NYNRIN Silent p.A1725A 0.41 TCGA-EE-A2MS-06 14 26917328 26917328 C T NOVA1 Missense_Mutation p.R454K 0.63 tolerated(0.28) benign(0.192) TCGA-EE-A2MS-06 14 31084663 31084663 C T G2E3 Silent p.I594I 0.43 TCGA-EE-A2MS-06 14 31164036 31164036 C T SCFD1 Silent p.L434L 0.16 TCGA-EE-A2MS-06 14 31191097 31191097 C T SCFD1 Missense_Mutation p.P582S 0.35 tolerated(0.26) possibly_damaging(0.596) TCGA-EE-A2MS-06 14 31774132 31774132 G A RP11-596D21.1 3'Flank 0.21 TCGA-EE-A2MS-06 14 32561547 32561547 C T ARHGAP5 Missense_Mutation p.L558F 0.60 tolerated(0.18) probably_damaging(0.961) TCGA-EE-A2MS-06 14 33291510 33291510 C T AKAP6 Silent p.P1497P 0.55 TCGA-EE-A2MS-06 14 33291517 33291517 C T AKAP6 Missense_Mutation p.R1500C 0.29 tolerated_low_confidence(0.13) benign(0) TCGA-EE-A2MS-06 14 34419857 34419857 G A EGLN3 Silent p.F34F 0.39 TCGA-EE-A2MS-06 14 35253105 35253105 G A BAZ1A Silent p.L620L 0.29 TCGA-EE-A2MS-06 14 36064925 36064925 G A RALGAPA1 Missense_Mutation p.P1869L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 14 36125019 36125019 G A RALGAPA1 Silent p.S1324S 0.21 TCGA-EE-A2MS-06 14 36789825 36789825 A C MBIP 5'UTR 0.23 TCGA-EE-A2MS-06 14 38724818 38724818 G A CLEC14A Missense_Mutation p.S137F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 14 42356404 42356404 C T LRFN5 Silent p.S192S 0.32 TCGA-EE-A2MS-06 14 45712031 45712031 G A MIS18BP1 Silent p.F197F 0.33 TCGA-EE-A2MS-06 14 47120507 47120507 C T RPL10L Missense_Mutation p.E145K 0.40 tolerated(1) benign(0) TCGA-EE-A2MS-06 14 51368622 51368622 G A ABHD12B Missense_Mutation p.D286N 0.69 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MS-06 14 52194676 52194676 C T FRMD6 Missense_Mutation p.P600S 0.38 tolerated(0.47) benign(0.23) TCGA-EE-A2MS-06 14 52485933 52485933 G A NID2 Silent p.F958F 0.82 TCGA-EE-A2MS-06 14 60212431 60212431 C T RTN1 Missense_Mutation p.G337E 0.39 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2MS-06 14 60212477 60212477 C T RTN1 Missense_Mutation p.E322K 0.80 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 14 64692073 64692073 C T SYNE2 Silent p.L6851L 0.72 TCGA-EE-A2MS-06 14 64898264 64898264 C T MTHFD1 Silent p.L442L 0.77 TCGA-EE-A2MS-06 14 68191281 68191281 G A RDH12 Missense_Mutation p.E54K 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 14 70714066 70714066 G A ADAM21P1 RNA 0.37 TCGA-EE-A2MS-06 14 70924528 70924528 C T ADAM21 Silent p.F104F 0.13 TCGA-EE-A2MS-06 14 71197228 71197228 G A MAP3K9 Missense_Mutation p.P1076S 0.57 tolerated(0.72) benign(0.006) TCGA-EE-A2MS-06 14 71543007 71543007 C T PCNX Silent p.V1736V 0.56 TCGA-EE-A2MS-06 14 71543100 71543100 C T PCNX Silent p.L1767L 0.68 TCGA-EE-A2MS-06 14 72985102 72985102 G A RGS6 Missense_Mutation p.D379N 0.64 deleterious(0.05) benign(0.004) TCGA-EE-A2MS-06 14 73190401 73190401 C T DPF3 Silent p.G155G 0.69 TCGA-EE-A2MS-06 14 74008211 74008211 C T ACOT1 Missense_Mutation p.P158S 0.68 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MS-06 14 74062026 74062026 G A ACOT4 Missense_Mutation p.E312K 0.53 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 14 74766262 74766262 G A ABCD4 Silent p.L92L 0.53 TCGA-EE-A2MS-06 14 74876401 74876401 G A SYNDIG1L Missense_Mutation p.P16L 0.64 deleterious(0.01) benign(0.327) TCGA-EE-A2MS-06 14 74978046 74978046 G A LTBP2 Missense_Mutation p.P977L 0.66 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 14 75514786 75514786 G A MLH3 Silent p.L525L 0.89 TCGA-EE-A2MS-06 14 77318763 77318763 G A C14orf166B Silent p.R261R 0.90 TCGA-EE-A2MS-06 14 77904188 77904188 G A VIPAS39 Missense_Mutation p.P267S 0.63 tolerated(0.23) benign(0.034) TCGA-EE-A2MS-06 14 89172638 89172638 C T EML5 Missense_Mutation p.R597K 0.74 tolerated(0.53) benign(0.138) TCGA-EE-A2MS-06 14 89338717 89338717 C T TTC8 Missense_Mutation p.A423V 0.42 tolerated(0.05) benign(0.13) TCGA-EE-A2MS-06 14 90446902 90446902 C T TDP1 Silent p.L270L 0.75 TCGA-EE-A2MS-06 14 90458319 90458319 C A TDP1 Silent p.S475S 0.75 TCGA-EE-A2MS-06 14 92185775 92185775 G A CATSPERB Silent p.I119I 0.40 TCGA-EE-A2MS-06 14 92189534 92189534 C T CATSPERB Splice_Site p.X57_splice 0.75 TCGA-EE-A2MS-06 14 92280133 92280133 C T TC2N 5'UTR 0.72 TCGA-EE-A2MS-06 14 94203637 94203637 G A PRIMA1 Silent p.S103S 0.85 TCGA-EE-A2MS-06 14 94245645 94245645 C T PRIMA1 Missense_Mutation p.E36K 0.78 deleterious(0.01) benign(0.156) TCGA-EE-A2MS-06 14 94756232 94756232 C T SERPINA10 Silent p.V233V 0.71 TCGA-EE-A2MS-06 14 94844779 94844779 G A SERPINA1 3'UTR 0.32 TCGA-EE-A2MS-06 14 95029956 95029956 C T SERPINA4 Missense_Mutation p.S46F 0.32 tolerated(0.52) benign(0.023) TCGA-EE-A2MS-06 14 95058553 95058553 C T SERPINA5 Missense_Mutation p.L400F 0.73 tolerated(0.22) benign(0.068) TCGA-EE-A2MS-06 14 95572535 95572535 G A DICER1 Nonsense_Mutation p.R944* 0.36 TCGA-EE-A2MS-06 14 96790332 96790332 G A ATG2B Missense_Mutation p.S814L 0.74 tolerated(0.52) probably_damaging(0.921) TCGA-EE-A2MS-06 14 99737530 99737530 G A BCL11B Missense_Mutation p.P9L 0.27 deleterious_low_confidence(0) benign(0) TCGA-EE-A2MS-06 15 101113902 101113902 G A LINS Silent p.S392S 0.38 TCGA-EE-A2MS-06 15 101593217 101593217 C T LRRK1 Silent p.A1260A 0.32 TCGA-EE-A2MS-06 15 101595334 101595334 C T LRRK1 Missense_Mutation p.S1413L 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 15 101972284 101972284 C T PCSK6 Missense_Mutation p.E141K 0.47 tolerated(0.64) benign(0.003) TCGA-EE-A2MS-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.27 deleterious(0.01) benign(0.037) TCGA-EE-A2MS-06 15 24921510 24921510 C T NPAP1 Missense_Mutation p.P166S 0.27 tolerated(0.43) benign(0.015) TCGA-EE-A2MS-06 15 24922582 24922582 C T NPAP1 Missense_Mutation p.S523F 0.48 tolerated(0.09) benign(0.014) TCGA-EE-A2MS-06 15 25227242 25227242 C T SNRPN 3'Flank 0.54 TCGA-EE-A2MS-06 15 25351701 25351701 G A SNORD116-29 RNA 0.53 TCGA-EE-A2MS-06 15 25417836 25417836 C T SNORD115-2 RNA 0.25 TCGA-EE-A2MS-06 15 25456851 25456851 C T SNORD115-22 3'Flank 0.52 TCGA-EE-A2MS-06 15 25463617 25463617 C T SNORD115-27 5'Flank 0.47 TCGA-EE-A2MS-06 15 25486721 25486721 G A SNORD115-40 5'Flank 0.64 TCGA-EE-A2MS-06 15 25488789 25488789 C T SNORD115-40 RNA 0.49 TCGA-EE-A2MS-06 15 26793153 26793153 C T GABRB3 Silent p.R403R 0.52 TCGA-EE-A2MS-06 15 26825604 26825604 C T GABRB3 Splice_Site p.X182_splice 0.21 TCGA-EE-A2MS-06 15 27193130 27193130 G A GABRA5 Missense_Mutation p.G380E 0.67 tolerated(0.59) possibly_damaging(0.609) TCGA-EE-A2MS-06 15 31819474 31819474 C T OTUD7A Silent p.R230R 0.50 TCGA-EE-A2MS-06 15 33603265 33603265 G A RYR3 Missense_Mutation p.G7R 0.30 benign(0.017) TCGA-EE-A2MS-06 15 34102837 34102837 C T RYR3 Missense_Mutation p.S3395L 0.31 benign(0.001) TCGA-EE-A2MS-06 15 35178780 35178780 G A AQR Missense_Mutation p.P922S 0.47 tolerated(0.22) benign(0.223) TCGA-EE-A2MS-06 15 37110296 37110296 C T CSNK1A1P1 RNA 0.38 TCGA-EE-A2MS-06 15 38757496 38757496 C T FAM98B Missense_Mutation p.L82F 0.33 deleterious(0.04) probably_damaging(0.989) TCGA-EE-A2MS-06 15 38773740 38773740 C T FAM98B Intron 0.53 TCGA-EE-A2MS-06 15 38782889 38782889 C T RASGRP1 Missense_Mutation p.E754K 0.14 deleterious_low_confidence(0.03) benign(0.021) TCGA-EE-A2MS-06 15 38990407 38990407 G A C15orf53 Nonsense_Mutation p.W67* 0.46 TCGA-EE-A2MS-06 15 40093615 40093615 G A GPR176 Silent p.A422A 0.31 TCGA-EE-A2MS-06 15 40589094 40589094 G A PLCB2 Missense_Mutation p.P447S 0.47 deleterious(0.01) benign(0.07) TCGA-EE-A2MS-06 15 40589767 40589767 C T PLCB2 Silent p.T426T 0.39 TCGA-EE-A2MS-06 15 40659901 40659901 C T DISP2 Missense_Mutation p.L530F 0.28 tolerated(0.36) benign(0.389) TCGA-EE-A2MS-06 15 40855073 40855073 G A C15orf57 Missense_Mutation p.P57S 0.38 tolerated(0.19) benign(0.006) TCGA-EE-A2MS-06 15 42684884 42684884 C T CAPN3 Silent p.V331V 0.27 TCGA-EE-A2MS-06 15 42742955 42742955 G A ZNF106 Silent p.S482S 0.34 TCGA-EE-A2MS-06 15 42742972 42742972 T C ZNF106 Missense_Mutation p.K477E 0.47 tolerated(0.18) benign(0.015) TCGA-EE-A2MS-06 15 43641319 43641319 G A ADAL Intron 0.57 TCGA-EE-A2MS-06 15 43658673 43658673 A C ZSCAN29 Missense_Mutation p.L286R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 15 43668773 43668773 G A TUBGCP4 Missense_Mutation p.D94N 0.30 tolerated(0.21) benign(0.087) TCGA-EE-A2MS-06 15 43784542 43784542 G A TP53BP1 Silent p.H44H 0.29 TCGA-EE-A2MS-06 15 43991269 43991269 C T CKMT1A Silent p.V412V 0.40 TCGA-EE-A2MS-06 15 44087899 44087899 C T SERINC4 Silent p.V392V 0.15 TCGA-EE-A2MS-06 15 44876092 44876092 G A SPG11 Missense_Mutation p.P1929L 0.33 deleterious(0) possibly_damaging(0.541) TCGA-EE-A2MS-06 15 45047124 45047124 C T TRIM69 Silent p.I11I 0.35 TCGA-EE-A2MS-06 15 45050926 45050926 G A TRIM69 Silent p.G229G 0.36 TCGA-EE-A2MS-06 15 45398341 45398341 G A DUOX2 Silent p.I710I 0.58 TCGA-EE-A2MS-06 15 45405245 45405245 C T DUOX2 Missense_Mutation p.E34K 0.43 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 15 48518707 48518707 G A SLC12A1 Intron 0.30 TCGA-EE-A2MS-06 15 48633604 48633604 G C DUT Intron 0.43 TCGA-EE-A2MS-06 15 48704769 48704769 G A FBN1 Silent p.I2741I 0.56 TCGA-EE-A2MS-06 15 48718057 48718057 G A FBN1 Silent p.I2403I 0.29 TCGA-EE-A2MS-06 15 48786449 48786449 G A FBN1 Missense_Mutation p.P894S 0.25 benign(0.094) TCGA-EE-A2MS-06 15 48812962 48812962 G T FBN1 Missense_Mutation p.N347K 0.29 probably_damaging(0.998) TCGA-EE-A2MS-06 15 49118249 49118249 G A SHC4 Silent p.I604I 0.45 TCGA-EE-A2MS-06 15 50152613 50152613 C T ATP8B4 Silent p.R1119R 0.33 TCGA-EE-A2MS-06 15 50152614 50152614 C T ATP8B4 Missense_Mutation p.R1119Q 0.31 tolerated(0.42) benign(0.001) TCGA-EE-A2MS-06 15 50782062 50782062 C T USP8 Missense_Mutation p.P652L 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 15 51514559 51514559 C T CYP19A1 Silent p.R205R 0.48 TCGA-EE-A2MS-06 15 51742477 51742477 G A DMXL2 Missense_Mutation p.S2918L 0.34 deleterious(0) possibly_damaging(0.572) TCGA-EE-A2MS-06 15 52664505 52664505 G A MYO5A Missense_Mutation p.A878V 0.28 tolerated(0.18) possibly_damaging(0.9) TCGA-EE-A2MS-06 15 53992010 53992010 C T WDR72 Missense_Mutation p.V568I 0.44 tolerated(0.2) benign(0.007) TCGA-EE-A2MS-06 15 54008826 54008826 G A WDR72 Missense_Mutation p.P106L 0.36 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MS-06 15 54305505 54305505 G A UNC13C Silent p.R135R 0.41 TCGA-EE-A2MS-06 15 54307230 54307230 G A UNC13C Silent p.E710E 0.45 TCGA-EE-A2MS-06 15 55933389 55933389 G A PRTG Missense_Mutation p.H687Y 0.21 tolerated(0.08) possibly_damaging(0.734) TCGA-EE-A2MS-06 15 56993156 56993156 A T ZNF280D Missense_Mutation p.V119D 0.33 tolerated(0.13) possibly_damaging(0.776) TCGA-EE-A2MS-06 15 57896505 57896505 G A MYZAP Silent p.E38E 0.45 TCGA-EE-A2MS-06 15 58006751 58006751 C T GCOM1 Silent p.L509L 0.38 TCGA-EE-A2MS-06 15 58258017 58258017 C T ALDH1A2 Silent p.K269K 0.34 TCGA-EE-A2MS-06 15 58840567 58840567 G A LIPC Missense_Mutation p.V283M 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 15 59179506 59179506 G A SLTM Missense_Mutation p.P870L 0.12 deleterious(0.01) possibly_damaging(0.766) TCGA-EE-A2MS-06 15 59180621 59180621 G A SLTM Missense_Mutation p.P780S 0.10 deleterious(0.04) possibly_damaging(0.655) TCGA-EE-A2MS-06 15 59180640 59180640 G A SLTM Silent p.H773H 0.17 TCGA-EE-A2MS-06 15 59470628 59470628 C T MYO1E Silent p.L671L 0.19 TCGA-EE-A2MS-06 15 59497637 59497637 A G MYO1E Silent p.L526L 0.17 TCGA-EE-A2MS-06 15 60907165 60907165 C T RORA Intron 0.22 TCGA-EE-A2MS-06 15 62161787 62161787 C T VPS13C Missense_Mutation p.G3554R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 15 63638846 63638846 G A CA12 Missense_Mutation p.P57S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 15 64067531 64067531 G A HERC1 Missense_Mutation p.P98S 0.46 benign(0.235) TCGA-EE-A2MS-06 15 64967899 64967899 C T ZNF609 Missense_Mutation p.P949L 0.51 tolerated(0.25) benign(0.028) TCGA-EE-A2MS-06 15 65111323 65111323 C T PIF1 Missense_Mutation p.G478E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 15 65113580 65113580 C T PIF1 Silent p.L319L 0.37 TCGA-EE-A2MS-06 15 65351754 65351754 C T RASL12 Missense_Mutation p.D55N 0.21 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A2MS-06 15 65489927 65489927 G A CILP Silent p.L899L 0.41 TCGA-EE-A2MS-06 15 65490910 65490910 G A CILP Missense_Mutation p.R572C 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 15 65621884 65621884 G A IGDCC3 Silent p.P683P 0.17 TCGA-EE-A2MS-06 15 65917379 65917379 G A SLC24A1 Missense_Mutation p.G321R 0.46 benign(0.088) TCGA-EE-A2MS-06 15 67571772 67571772 C T IQCH Silent p.F103F 0.14 TCGA-EE-A2MS-06 15 68695308 68695308 G A ITGA11 Missense_Mutation p.T38I 0.34 deleterious(0.01) benign(0.025) TCGA-EE-A2MS-06 15 69727868 69727868 C T KIF23 Silent p.V373V 0.46 TCGA-EE-A2MS-06 15 72104678 72104678 G A NR2E3 Intron 0.21 TCGA-EE-A2MS-06 15 72338351 72338351 A C MYO9A Missense_Mutation p.V185G 0.20 deleterious(0.04) benign(0.013) TCGA-EE-A2MS-06 15 72552844 72552844 G A PARP6 Missense_Mutation p.P244L 0.52 tolerated(0.74) benign(0.003) TCGA-EE-A2MS-06 15 72637870 72637870 G A HEXA Silent p.A481A 0.33 TCGA-EE-A2MS-06 15 72642919 72642919 G A HEXA Missense_Mutation p.R249W 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A2MS-06 15 72642920 72642920 G A HEXA Silent p.L248L 0.39 TCGA-EE-A2MS-06 15 72691003 72691003 C T TMEM202 Missense_Mutation p.P31S 0.42 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 15 73615779 73615779 C T HCN4 Silent p.G885G 0.26 TCGA-EE-A2MS-06 15 74180061 74180061 G A TBC1D21 Missense_Mutation p.G293E 0.42 tolerated(0.15) possibly_damaging(0.493) TCGA-EE-A2MS-06 15 74468300 74468300 G A ISLR Silent p.K367K 0.30 TCGA-EE-A2MS-06 15 75044490 75044490 G A CYP1A2 Silent p.R356R 0.48 TCGA-EE-A2MS-06 15 75044547 75044547 C T CYP1A2 Silent p.T375T 0.49 TCGA-EE-A2MS-06 15 75114199 75114199 C T LMAN1L Silent p.S363S 0.43 TCGA-EE-A2MS-06 15 76019596 76019596 C T ODF3L1 Silent p.Y180Y 0.45 TCGA-EE-A2MS-06 15 76496495 76496495 G A C15orf27 Missense_Mutation p.E479K 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.478) TCGA-EE-A2MS-06 15 76578774 76578774 G A ETFA Missense_Mutation p.S167F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 15 78458576 78458576 C T IDH3A Missense_Mutation p.H317Y 0.42 tolerated(0.28) benign(0.274) TCGA-EE-A2MS-06 15 78486327 78486327 G A ACSBG1 Silent p.L163L 0.19 TCGA-EE-A2MS-06 15 79058665 79058665 G A ADAMTS7 Silent p.F1196F 0.17 TCGA-EE-A2MS-06 15 79186534 79186534 C T MORF4L1 Missense_Mutation p.S294F 0.42 deleterious(0) possibly_damaging(0.887) TCGA-EE-A2MS-06 15 80137522 80137522 C T MTHFS 3'UTR 0.39 TCGA-EE-A2MS-06 15 80429958 80429958 C T ZFAND6 Silent p.I205I 0.21 TCGA-EE-A2MS-06 15 80867401 80867401 C T ARNT2 Missense_Mutation p.S488F 0.20 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A2MS-06 15 83931723 83931723 G A BNC1 Silent p.P760P 0.58 TCGA-EE-A2MS-06 15 83936884 83936884 C T BNC1 Splice_Site p.X67_splice 0.50 TCGA-EE-A2MS-06 15 84245385 84245385 G A SH3GL3 Silent p.K172K 0.46 TCGA-EE-A2MS-06 15 84694116 84694116 C T ADAMTSL3 Silent p.A1528A 0.20 TCGA-EE-A2MS-06 15 85407727 85407727 C T ALPK3 Silent p.T1720T 0.19 TCGA-EE-A2MS-06 15 85410592 85410592 C T ALPK3 Nonsense_Mutation p.R1792* 0.48 TCGA-EE-A2MS-06 15 85467298 85467298 C T SLC28A1 Missense_Mutation p.A347V 0.09 deleterious(0.02) probably_damaging(0.957) TCGA-EE-A2MS-06 15 85478590 85478590 G A SLC28A1 Silent p.L474L 0.38 TCGA-EE-A2MS-06 15 86205668 86205668 G A AKAP13 Missense_Mutation p.D1599N 0.07 deleterious(0.04) benign(0.131) TCGA-EE-A2MS-06 15 86687022 86687022 G A AGBL1 Missense_Mutation p.D24N 0.22 tolerated(0.38) probably_damaging(1) TCGA-EE-A2MS-06 15 87572106 87572106 C T AGBL1 3'UTR 0.32 TCGA-EE-A2MS-06 15 88522521 88522521 C T NTRK3 Intron 0.33 TCGA-EE-A2MS-06 15 89386847 89386847 C T ACAN Missense_Mutation p.P340L 0.33 deleterious(0) unknown(0) TCGA-EE-A2MS-06 15 89398802 89398802 C T ACAN Missense_Mutation p.P996S 0.18 tolerated(0.06) possibly_damaging(0.474) TCGA-EE-A2MS-06 15 89400855 89400855 G A ACAN Missense_Mutation p.G1680E 0.40 tolerated(0.09) probably_damaging(1) TCGA-EE-A2MS-06 15 90226548 90226548 G A PEX11A 3'UTR 0.47 TCGA-EE-A2MS-06 15 90328578 90328578 G A ANPEP 3'UTR 0.18 TCGA-EE-A2MS-06 15 90784215 90784215 C T GDPGP1 Silent p.T25T 0.18 TCGA-EE-A2MS-06 15 90801445 90801445 G A TTLL13 Missense_Mutation p.E371K 0.46 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 15 91461529 91461529 C T MAN2A2 Missense_Mutation p.P1034S 0.43 tolerated(0.79) benign(0.217) TCGA-EE-A2MS-06 15 91811704 91811704 G A SV2B Missense_Mutation p.M414I 0.44 tolerated(0.13) possibly_damaging(0.61) TCGA-EE-A2MS-06 15 93557971 93557971 C T CHD2 Missense_Mutation p.R1580C 0.31 deleterious(0.01) possibly_damaging(0.676) TCGA-EE-A2MS-06 15 97327391 97327391 C T SPATA8 Missense_Mutation p.S33L 0.15 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-EE-A2MS-06 15 99500587 99500587 C T IGF1R Silent p.F1340F 0.41 TCGA-EE-A2MS-06 16 10032313 10032313 G A GRIN2A Silent p.F170F 0.21 TCGA-EE-A2MS-06 16 11272495 11272495 C T CLEC16A Missense_Mutation p.P1037L 0.33 tolerated_low_confidence(0.07) benign(0.008) TCGA-EE-A2MS-06 16 12136845 12136845 C T SNX29 Silent p.G113G 0.32 TCGA-EE-A2MS-06 16 1250394 1250394 C T CACNA1H Silent p.P314P 0.44 TCGA-EE-A2MS-06 16 14042072 14042072 C T ERCC4 Silent p.I873I 0.42 TCGA-EE-A2MS-06 16 14345755 14345755 C T MKL2 Missense_Mutation p.P764S 0.55 tolerated(0.44) benign(0.019) TCGA-EE-A2MS-06 16 14698029 14698029 C G PARN Missense_Mutation p.E253Q 0.16 deleterious(0.04) possibly_damaging(0.741) TCGA-EE-A2MS-06 16 14947412 14947412 A C NOMO1 Missense_Mutation p.E275A 0.43 tolerated(0.2) benign(0.02) TCGA-EE-A2MS-06 16 14947435 14947435 T A NOMO1 Missense_Mutation p.S283T 0.48 tolerated(0.25) benign(0.232) TCGA-EE-A2MS-06 16 15661910 15661910 C T C16orf45 Missense_Mutation p.P101S 0.30 deleterious(0.04) possibly_damaging(0.473) TCGA-EE-A2MS-06 16 15690547 15690547 G A KIAA0430 3'UTR 0.49 TCGA-EE-A2MS-06 16 167369 167369 G A NPRL3 Silent p.S108S 0.31 TCGA-EE-A2MS-06 16 167370 167370 G A NPRL3 Missense_Mutation p.S108F 0.31 deleterious(0.02) benign(0.216) TCGA-EE-A2MS-06 16 1815106 1815106 C T MAPK8IP3 Silent p.A790A 0.31 TCGA-EE-A2MS-06 16 18597196 18597196 C T ABCC6P1 RNA 0.58 TCGA-EE-A2MS-06 16 18844455 18844455 G A SMG1 Missense_Mutation p.P2867S 0.39 tolerated(0.11) probably_damaging(0.994) TCGA-EE-A2MS-06 16 19049269 19049269 C T TMC7 Missense_Mutation p.S360F 0.24 tolerated(0.22) benign(0.008) TCGA-EE-A2MS-06 16 19056754 19056754 C T TMC7 Missense_Mutation p.P516L 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 16 19455470 19455470 C T TMC5 Missense_Mutation p.L286F 0.48 tolerated(0.05) benign(0.303) TCGA-EE-A2MS-06 16 19554064 19554064 C T CCP110 Silent p.A783A 0.31 TCGA-EE-A2MS-06 16 19718265 19718265 C T KNOP1 Silent p.R448R 0.23 TCGA-EE-A2MS-06 16 2025811 2025811 C T TBL3 Silent p.F330F 0.32 TCGA-EE-A2MS-06 16 20384349 20384349 G A PDILT Silent p.I259I 0.49 TCGA-EE-A2MS-06 16 2049689 2049689 G A ZNF598 Missense_Mutation p.P621S 0.19 benign(0.013) TCGA-EE-A2MS-06 16 20696537 20696537 C T ACSM1 Silent p.V127V 0.17 TCGA-EE-A2MS-06 16 20959854 20959854 G A DNAH3 Missense_Mutation p.S3765F 0.10 tolerated(0.72) benign(0.002) TCGA-EE-A2MS-06 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.38 tolerated(0.09) benign(0.052) TCGA-EE-A2MS-06 16 20975658 20975658 G A DNAH3 Missense_Mutation p.P3183L 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 16 21658603 21658603 C T IGSF6 Missense_Mutation p.R93K 0.23 tolerated(1) benign(0.012) TCGA-EE-A2MS-06 16 21698938 21698938 C T OTOA Missense_Mutation p.R202W 0.59 tolerated(0.1) benign(0.005) TCGA-EE-A2MS-06 16 21847838 21847838 G A NPIPB4 Missense_Mutation p.H624Y 0.26 possibly_damaging(0.478) TCGA-EE-A2MS-06 16 21854892 21854892 G A NPIPB4 Silent p.S120S 0.13 TCGA-EE-A2MS-06 16 23208611 23208611 G A SCNN1G Missense_Mutation p.E314K 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A2MS-06 16 23706640 23706640 C T ERN2 Missense_Mutation p.E609K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 16 24231384 24231384 G A PRKCB 3'UTR 0.57 TCGA-EE-A2MS-06 16 24881266 24881266 C T SLC5A11 Silent p.F84F 0.36 TCGA-EE-A2MS-06 16 2577965 2577965 C T AMDHD2 Missense_Mutation p.R203C 0.31 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MS-06 16 26147162 26147162 G A HS3ST4 Missense_Mutation p.G322R 0.55 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 16 26147163 26147163 G A HS3ST4 Missense_Mutation p.G322E 0.55 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MS-06 16 26147239 26147239 C T HS3ST4 Silent p.F347F 0.29 TCGA-EE-A2MS-06 16 27078267 27078267 C T C16orf82 RNA 0.47 TCGA-EE-A2MS-06 16 27373780 27373780 G A IL4R Silent p.V369V 0.21 TCGA-EE-A2MS-06 16 27473718 27473718 G A GTF3C1 Missense_Mutation p.A2005V 0.69 deleterious(0) possibly_damaging(0.788) TCGA-EE-A2MS-06 16 27689173 27689173 C T KIAA0556 Silent p.L222L 0.23 TCGA-EE-A2MS-06 16 28181102 28181102 G A XPO6 Silent p.D178D 0.50 TCGA-EE-A2MS-06 16 28498850 28498850 G A CLN3 Silent p.L129L 0.24 TCGA-EE-A2MS-06 16 28619681 28619681 G A SULT1A1 Silent p.A101A 0.30 TCGA-EE-A2MS-06 16 28993231 28993231 C T SPNS1 Silent p.F273F 0.57 TCGA-EE-A2MS-06 16 29913068 29913068 G A ASPHD1 Missense_Mutation p.R259Q 0.23 tolerated(0.6) benign(0.016) TCGA-EE-A2MS-06 16 29994970 29994970 C A TAOK2 Silent p.I469I 0.27 TCGA-EE-A2MS-06 16 29994971 29994971 C T TAOK2 Nonsense_Mutation p.R470* 0.27 TCGA-EE-A2MS-06 16 29999291 29999291 C T TAOK2 Missense_Mutation p.P1233L 0.50 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2MS-06 16 30122787 30122787 G A GDPD3 Missense_Mutation p.S210F 0.19 tolerated(0.07) benign(0.008) TCGA-EE-A2MS-06 16 30522201 30522201 G A ITGAL Splice_Site p.X874_splice 0.61 TCGA-EE-A2MS-06 16 30569482 30569482 G A ZNF764 Missense_Mutation p.L8F 0.55 tolerated(0.07) unknown(0) TCGA-EE-A2MS-06 16 30680858 30680858 C T FBRS Silent p.L945L 0.49 TCGA-EE-A2MS-06 16 31004130 31004130 G A STX1B 3'UTR 0.31 TCGA-EE-A2MS-06 16 3119012 3119012 A T IL32 Nonsense_Mutation p.K75* 0.25 TCGA-EE-A2MS-06 16 31201371 31201371 C T FUS Silent p.F359F 0.25 TCGA-EE-A2MS-06 16 31308886 31308886 G A ITGAM Missense_Mutation p.G470S 0.30 tolerated(0.14) possibly_damaging(0.486) TCGA-EE-A2MS-06 16 31308887 31308887 G T ITGAM Missense_Mutation p.G470V 0.30 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MS-06 16 31373212 31373212 C T ITGAX Silent p.F356F 0.27 TCGA-EE-A2MS-06 16 31382989 31382989 G A ITGAX Missense_Mutation p.D682N 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 16 31388366 31388367 GG A ITGAX Frame_Shift_Del p.G891Kfs*6 0.18 TCGA-EE-A2MS-06 16 31435806 31435806 G A ITGAD Missense_Mutation p.E1094K 0.20 tolerated(0.79) benign(0.004) TCGA-EE-A2MS-06 16 31494448 31494448 C T SLC5A2 5'UTR 0.41 TCGA-EE-A2MS-06 16 31539877 31539877 G A AHSP Silent p.G58G 0.60 TCGA-EE-A2MS-06 16 3190720 3190720 C T ZNF213 Missense_Mutation p.S251F 0.53 tolerated(0.06) benign(0.352) TCGA-EE-A2MS-06 16 32077676 32077676 G A IGHV3OR16-9 Silent p.V97V 0.27 TCGA-EE-A2MS-06 16 321272 321272 G A RGS11 Silent p.L264L 0.26 TCGA-EE-A2MS-06 16 3274538 3274538 G A ZNF200 Missense_Mutation p.S181F 0.28 tolerated(0.14) benign(0.007) TCGA-EE-A2MS-06 16 3293550 3293550 G A MEFV Missense_Mutation p.P646L 0.26 tolerated(0.05) possibly_damaging(0.612) TCGA-EE-A2MS-06 16 333322 333322 C T PDIA2 Silent p.T51T 0.21 TCGA-EE-A2MS-06 16 3367324 3367324 C T ZNF75A Missense_Mutation p.H116Y 0.33 tolerated(0.19) benign(0.009) TCGA-EE-A2MS-06 16 3454998 3454998 C T ZNF174 Intron 0.37 TCGA-EE-A2MS-06 16 3487251 3487251 C T ZNF597 Missense_Mutation p.E150K 0.19 tolerated(0.12) possibly_damaging(0.503) TCGA-EE-A2MS-06 16 3639858 3639858 G A SLX4 Missense_Mutation p.P1261S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 16 4027629 4027629 G A ADCY9 Silent p.F894F 0.41 TCGA-EE-A2MS-06 16 4242450 4242450 C T SRL Missense_Mutation p.D376N 0.25 tolerated(0.39) possibly_damaging(0.619) TCGA-EE-A2MS-06 16 426736 426736 G A TMEM8A Missense_Mutation p.P238S 0.34 tolerated(0.09) benign(0.196) TCGA-EE-A2MS-06 16 4833664 4833664 C T SEPT12 Missense_Mutation p.A206T 0.42 tolerated(0.67) benign(0.013) TCGA-EE-A2MS-06 16 48381495 48381495 G A LONP2 Silent p.V672V 0.64 TCGA-EE-A2MS-06 16 50753905 50753905 C T NOD2 Silent p.S900S 0.49 TCGA-EE-A2MS-06 16 5110325 5110325 C T C16orf89 Silent p.E157E 0.41 TCGA-EE-A2MS-06 16 51175758 51175758 C T SALL1 Missense_Mutation p.M125I 0.52 tolerated(0.07) benign(0.186) TCGA-EE-A2MS-06 16 56670389 56670389 G A MT1M 3'Flank 0.50 TCGA-EE-A2MS-06 16 57494579 57494579 G A COQ9 3'UTR 0.64 TCGA-EE-A2MS-06 16 596994 596994 C T CAPN15 Silent p.R52R 0.30 TCGA-EE-A2MS-06 16 61855009 61855009 G A CDH8 Missense_Mutation p.H282Y 0.48 tolerated(0.13) possibly_damaging(0.539) TCGA-EE-A2MS-06 16 64984673 64984673 G A CDH11 Silent p.L631L 0.70 TCGA-EE-A2MS-06 16 65006808 65006808 G A CDH11 Silent p.I463I 0.32 TCGA-EE-A2MS-06 16 66603928 66603928 C T CMTM1 Silent p.V174V 0.30 TCGA-EE-A2MS-06 16 66620900 66620900 G A CMTM2 Missense_Mutation p.D149N 0.27 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MS-06 16 66957429 66957429 G A RRAD Silent p.V213V 0.24 TCGA-EE-A2MS-06 16 67029684 67029684 C T CES4A Missense_Mutation p.P71L 0.55 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MS-06 16 675979 675979 C T RAB40C Silent p.A141A 0.29 TCGA-EE-A2MS-06 16 67670719 67670719 C T CTCF Missense_Mutation p.P655L 0.24 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-EE-A2MS-06 16 67682024 67682024 C T RLTPR Silent p.L381L 0.16 TCGA-EE-A2MS-06 16 67866145 67866145 T C CENPT Missense_Mutation p.N92S 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MS-06 16 68014011 68014011 G A DPEP3 Silent p.F116F 0.18 TCGA-EE-A2MS-06 16 68025810 68025810 G A DPEP2 Missense_Mutation p.S198F 0.35 deleterious(0.05) benign(0.208) TCGA-EE-A2MS-06 16 68386189 68386189 C T PRMT7 Silent p.S484S 0.25 TCGA-EE-A2MS-06 16 68404844 68404844 G A SMPD3 Missense_Mutation p.P414L 0.35 deleterious(0) probably_damaging(0.955) TCGA-EE-A2MS-06 16 69404472 69404472 G A TERF2 Nonsense_Mutation p.Q210* 0.32 TCGA-EE-A2MS-06 16 69727437 69727437 C T NFAT5 Missense_Mutation p.P1237S 0.20 benign(0.345) TCGA-EE-A2MS-06 16 69965483 69965483 G A WWP2 Silent p.Q531Q 0.29 TCGA-EE-A2MS-06 16 70422341 70422341 G A ST3GAL2 Silent p.F214F 0.52 TCGA-EE-A2MS-06 16 70889126 70889126 G A HYDIN Silent p.F4116F 0.45 TCGA-EE-A2MS-06 16 709107 709107 C T WDR90 Silent p.A1011A 0.18 TCGA-EE-A2MS-06 16 70923495 70923495 C T HYDIN Missense_Mutation p.G3257S 0.25 benign(0.031) TCGA-EE-A2MS-06 16 70941384 70941384 G A HYDIN Missense_Mutation p.P2803S 0.24 probably_damaging(0.932) TCGA-EE-A2MS-06 16 71101260 71101260 C T HYDIN Missense_Mutation p.E670K 0.60 probably_damaging(0.97) TCGA-EE-A2MS-06 16 71319424 71319424 G A CMTR2 Nonsense_Mutation p.Q134* 0.29 TCGA-EE-A2MS-06 16 71509131 71509131 G A ZNF19 Missense_Mutation p.P440L 0.13 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MS-06 16 71715751 71715751 G A PHLPP2 Missense_Mutation p.P265S 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 16 71780655 71780655 G A AP1G1 Intron 0.22 TCGA-EE-A2MS-06 16 72163016 72163016 C T PMFBP1 Missense_Mutation p.M633I 0.30 deleterious(0.03) benign(0.012) TCGA-EE-A2MS-06 16 74455097 74455097 G A CLEC18B Silent p.T24T 0.20 TCGA-EE-A2MS-06 16 74719433 74719433 G A MLKL Silent p.F257F 0.28 TCGA-EE-A2MS-06 16 75268959 75268959 G A BCAR1 Missense_Mutation p.P659L 0.18 tolerated(0.18) benign(0.102) TCGA-EE-A2MS-06 16 75579342 75579342 G A TMEM231 Missense_Mutation p.P193S 0.43 tolerated(0.24) benign(0.055) TCGA-EE-A2MS-06 16 76572047 76572047 G A CNTNAP4 Silent p.V937V 0.24 TCGA-EE-A2MS-06 16 77398091 77398091 C T ADAMTS18 Missense_Mutation p.M322I 0.42 deleterious(0.01) possibly_damaging(0.688) TCGA-EE-A2MS-06 16 7743345 7743345 G A RBFOX1 Intron 0.33 TCGA-EE-A2MS-06 16 7759066 7759066 G A RBFOX1 Missense_Mutation p.R356Q 0.44 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2MS-06 16 77910348 77910348 C T VAT1L Silent p.P268P 0.22 TCGA-EE-A2MS-06 16 814721 814721 C T MSLN Silent p.F125F 0.24 TCGA-EE-A2MS-06 16 81725423 81725423 C T CMIP Nonsense_Mutation p.Q478* 0.20 TCGA-EE-A2MS-06 16 82034428 82034428 G A SDR42E1 Silent p.L12L 0.15 TCGA-EE-A2MS-06 16 84199596 84199596 G A DNAAF1 Intron 0.29 TCGA-EE-A2MS-06 16 84211377 84211377 G A DNAAF1 Missense_Mutation p.G703E 0.31 deleterious_low_confidence(0.03) probably_damaging(0.988) TCGA-EE-A2MS-06 16 84215990 84215990 G A TAF1C Missense_Mutation p.P180L 0.38 deleterious(0.02) possibly_damaging(0.844) TCGA-EE-A2MS-06 16 84270818 84270818 G A KCNG4 Missense_Mutation p.R92W 0.22 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A2MS-06 16 84270909 84270909 G A KCNG4 Silent p.I61I 0.55 TCGA-EE-A2MS-06 16 84444353 84444353 T C ATP2C2 Missense_Mutation p.V166A 0.27 deleterious(0.01) possibly_damaging(0.719) TCGA-EE-A2MS-06 16 84488527 84488527 G A ATP2C2 Missense_Mutation p.G695E 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 16 84600448 84600448 G A COTL1 3'UTR 0.39 TCGA-EE-A2MS-06 16 85721087 85721087 G A GINS2 Missense_Mutation p.P62S 0.21 deleterious(0.02) possibly_damaging(0.717) TCGA-EE-A2MS-06 16 86585794 86585794 G A MTHFSD Intron 0.27 TCGA-EE-A2MS-06 16 86585798 86585798 A C MTHFSD Intron 0.51 TCGA-EE-A2MS-06 16 87369024 87369024 G A FBXO31 Silent p.S294S 0.09 TCGA-EE-A2MS-06 16 88958295 88958295 G A CBFA2T3 Silent p.L236L 0.17 TCGA-EE-A2MS-06 16 89346472 89346472 G A ANKRD11 Missense_Mutation p.L2160F 0.21 benign(0.363) TCGA-EE-A2MS-06 16 89619491 89619491 G A SPG7 Missense_Mutation p.M628I 0.44 deleterious(0) possibly_damaging(0.513) TCGA-EE-A2MS-06 16 89661997 89661997 C T CPNE7 Missense_Mutation p.R584W 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 16 9858517 9858517 C T GRIN2A Missense_Mutation p.E962K 0.50 deleterious(0.02) possibly_damaging(0.642) TCGA-EE-A2MS-06 16 9858742 9858742 G A GRIN2A Silent p.L887L 0.23 TCGA-EE-A2MS-06 16 9923456 9923456 G A GRIN2A Silent p.L611L 0.22 TCGA-EE-A2MS-06 16 9927982 9927982 C T GRIN2A Missense_Mutation p.R586K 0.49 deleterious(0.03) possibly_damaging(0.789) TCGA-EE-A2MS-06 17 10247364 10247364 G A MYH13 Silent p.S549S 0.57 TCGA-EE-A2MS-06 17 10299737 10299737 C T MYH8 Silent p.E1521E 0.68 TCGA-EE-A2MS-06 17 10304883 10304883 C T MYH8 Missense_Mutation p.E970K 0.60 deleterious(0.02) possibly_damaging(0.852) TCGA-EE-A2MS-06 17 10305102 10305102 C T MYH8 Missense_Mutation p.E897K 0.64 deleterious(0) benign(0.333) TCGA-EE-A2MS-06 17 10323373 10323373 C T MYH8 Missense_Mutation p.E58K 0.29 tolerated(0.19) benign(0.17) TCGA-EE-A2MS-06 17 10354126 10354126 C T MYH4 Missense_Mutation p.E1318K 0.30 deleterious(0.02) possibly_damaging(0.685) TCGA-EE-A2MS-06 17 10354127 10354127 T A MYH4 Missense_Mutation p.E1317D 0.29 tolerated(0.15) possibly_damaging(0.879) TCGA-EE-A2MS-06 17 10363547 10363547 G A MYH4 Silent p.F413F 0.39 TCGA-EE-A2MS-06 17 10364338 10364338 C T MYH4 Missense_Mutation p.E348K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 17 10398382 10398382 C T MYH1 Missense_Mutation p.D1778N 0.18 deleterious(0.04) benign(0.181) TCGA-EE-A2MS-06 17 10400511 10400511 C T MYH1 Splice_Site p.X1511_splice 0.18 TCGA-EE-A2MS-06 17 10411710 10411710 G A MYH1 Missense_Mutation p.L623F 0.56 deleterious(0.01) possibly_damaging(0.863) TCGA-EE-A2MS-06 17 10411973 10411973 G A MYH1 Missense_Mutation p.S535F 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 10415456 10415456 C T MYH1 Missense_Mutation p.A401T 0.30 deleterious(0) benign(0.025) TCGA-EE-A2MS-06 17 10415820 10415820 G A MYH1 Missense_Mutation p.S351F 0.20 deleterious(0) possibly_damaging(0.547) TCGA-EE-A2MS-06 17 10416027 10416027 C T MYH1 Missense_Mutation p.D327N 0.19 tolerated(0.21) benign(0.024) TCGA-EE-A2MS-06 17 10435093 10435093 C T MYH2 Missense_Mutation p.E852K 0.46 deleterious(0.02) possibly_damaging(0.877) TCGA-EE-A2MS-06 17 10533018 10533018 G A MYH3 Nonsense_Mutation p.R1898* 0.23 TCGA-EE-A2MS-06 17 10600885 10600885 C T SCO1 5'UTR 0.33 TCGA-EE-A2MS-06 17 11584062 11584062 A G DNAH9 Missense_Mutation p.N1200S 0.38 benign(0.007) TCGA-EE-A2MS-06 17 11597185 11597185 G A DNAH9 Missense_Mutation p.D1539N 0.18 probably_damaging(0.968) TCGA-EE-A2MS-06 17 11666756 11666756 G A DNAH9 Splice_Site p.X2332_splice 0.22 TCGA-EE-A2MS-06 17 11687804 11687804 G A DNAH9 Missense_Mutation p.G2670E 0.54 benign(0.139) TCGA-EE-A2MS-06 17 11786988 11786988 C T DNAH9 Missense_Mutation p.S3631F 0.46 possibly_damaging(0.903) TCGA-EE-A2MS-06 17 12656151 12656151 G A MYOCD Missense_Mutation p.E516K 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 17 13399630 13399630 C T HS3ST3A1 Missense_Mutation p.G369S 0.39 deleterious(0) probably_damaging(0.925) TCGA-EE-A2MS-06 17 13399937 13399937 G A HS3ST3A1 Silent p.F266F 0.23 TCGA-EE-A2MS-06 17 13400018 13400018 G A HS3ST3A1 Silent p.I239I 0.12 TCGA-EE-A2MS-06 17 13400099 13400099 G A HS3ST3A1 Silent p.T212T 0.10 TCGA-EE-A2MS-06 17 14248381 14248381 C T HS3ST3B1 Silent p.T197T 0.57 TCGA-EE-A2MS-06 17 15134136 15134136 G A PMP22 3'UTR 0.26 TCGA-EE-A2MS-06 17 15968285 15968285 G A NCOR1 Missense_Mutation p.P1667L 0.16 benign(0.305) TCGA-EE-A2MS-06 17 16221109 16221109 C T PIGL Nonsense_Mutation p.Q183* 0.33 TCGA-EE-A2MS-06 17 16842812 16842812 C T TNFRSF13B 3'UTR 0.50 TCGA-EE-A2MS-06 17 17696251 17696251 C T RAI1 5'UTR 0.43 TCGA-EE-A2MS-06 17 17721617 17721617 G A SREBF1 Silent p.L410L 0.61 TCGA-EE-A2MS-06 17 18040975 18040975 C T MYO15A Silent p.I1619I 0.18 TCGA-EE-A2MS-06 17 18196150 18196150 G A TOP3A Nonsense_Mutation p.R364* 0.29 TCGA-EE-A2MS-06 17 18220690 18220690 C T SMCR8 Silent p.I529I 0.56 TCGA-EE-A2MS-06 17 19646600 19646600 G A ALDH3A1 Silent p.T113T 0.46 TCGA-EE-A2MS-06 17 19651586 19651586 C T ALDH3A1 5'Flank 0.71 TCGA-EE-A2MS-06 17 19699438 19699438 G A ULK2 Missense_Mutation p.A656V 0.20 tolerated(0.18) benign(0.001) TCGA-EE-A2MS-06 17 21318927 21318927 C T KCNJ12 Silent p.F91F 0.20 TCGA-EE-A2MS-06 17 21825560 21825560 C T FAM27L RNA 0.21 TCGA-EE-A2MS-06 17 25976029 25976029 C T LGALS9 3'UTR 0.36 TCGA-EE-A2MS-06 17 26856124 26856124 G A FOXN1 Missense_Mutation p.G238S 0.14 tolerated(0.19) benign(0.206) TCGA-EE-A2MS-06 17 26861910 26861910 G A FOXN1 Missense_Mutation p.D441N 0.65 tolerated(0.54) benign(0.003) TCGA-EE-A2MS-06 17 27026844 27026844 C A SUPT6H Silent p.G1498G 0.13 TCGA-EE-A2MS-06 17 27026845 27026845 C T SUPT6H Nonsense_Mutation p.Q1499* 0.13 TCGA-EE-A2MS-06 17 27071154 27071154 C T TRAF4 Silent p.F8F 0.37 TCGA-EE-A2MS-06 17 27233293 27233293 C A PHF12 Missense_Mutation p.D975Y 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-EE-A2MS-06 17 27240101 27240101 G A PHF12 Silent p.C496C 0.24 TCGA-EE-A2MS-06 17 27419908 27419908 G A MYO18A Missense_Mutation p.P1680S 0.20 tolerated(0.07) probably_damaging(0.992) TCGA-EE-A2MS-06 17 27844552 27844552 C T TAOK1 Nonsense_Mutation p.Q596* 0.22 TCGA-EE-A2MS-06 17 27963649 27963649 G A SSH2 Silent p.V506V 0.38 TCGA-EE-A2MS-06 17 28545857 28545857 C T SLC6A4 Missense_Mutation p.G146R 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 28712108 28712108 C T CPD Missense_Mutation p.S283L 0.23 deleterious(0.01) possibly_damaging(0.507) TCGA-EE-A2MS-06 17 28750597 28750597 C T CPD Silent p.L577L 0.26 TCGA-EE-A2MS-06 17 28886595 28886595 G A TBC1D29 5'UTR 0.22 TCGA-EE-A2MS-06 17 29548867 29548867 G A NF1 Splice_Site p.X548_splice 0.16 TCGA-EE-A2MS-06 17 29556419 29556419 T C NF1 Missense_Mutation p.L929P 0.57 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 17 2995520 2995520 C T OR1D2 Missense_Mutation p.M257I 0.20 deleterious(0.03) benign(0.213) TCGA-EE-A2MS-06 17 30326036 30326036 C T SUZ12 3'UTR 0.26 TCGA-EE-A2MS-06 17 30658842 30658842 G A C17orf75 Silent p.A377A 0.19 TCGA-EE-A2MS-06 17 32688885 32688885 G A CCL1 Missense_Mutation p.S36L 0.18 tolerated(0.33) benign(0.011) TCGA-EE-A2MS-06 17 32908038 32908038 G A TMEM132E 5'UTR 0.47 TCGA-EE-A2MS-06 17 32956109 32956109 G A TMEM132E Silent p.R318R 0.38 TCGA-EE-A2MS-06 17 33520449 33520449 G A SLC35G3 Missense_Mutation p.A293V 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MS-06 17 34072135 34072135 C T GAS2L2 Missense_Mutation p.R794Q 0.36 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A2MS-06 17 35378230 35378230 C T AATF Intron 0.36 TCGA-EE-A2MS-06 17 35620782 35620782 G A ACACA Missense_Mutation p.P379S 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 17 35872998 35872998 C T DUSP14 3'UTR 0.22 TCGA-EE-A2MS-06 17 36093787 36093787 C T HNF1B Missense_Mutation p.G191E 0.43 tolerated(0.07) benign(0.004) TCGA-EE-A2MS-06 17 3661105 3661105 C T ITGAE Silent p.K305K 0.31 TCGA-EE-A2MS-06 17 36962603 36962603 G A CWC25 Silent p.S316S 0.53 TCGA-EE-A2MS-06 17 37265577 37265577 C T PLXDC1 Nonsense_Mutation p.W108* 0.27 TCGA-EE-A2MS-06 17 37583963 37583963 C T MED1 Missense_Mutation p.E244K 0.43 tolerated(0.14) possibly_damaging(0.872) TCGA-EE-A2MS-06 17 37817088 37817088 C T STARD3 Missense_Mutation p.T327I 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MS-06 17 38122606 38122606 G A GSDMA Missense_Mutation p.G103E 0.45 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A2MS-06 17 38130526 38130526 G A GSDMA Missense_Mutation p.G251E 0.27 tolerated(0.16) benign(0.035) TCGA-EE-A2MS-06 17 3819629 3819629 C T P2RX1 5'UTR 0.27 TCGA-EE-A2MS-06 17 38349645 38349645 C T RAPGEFL1 Missense_Mutation p.R408C 0.21 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MS-06 17 38652456 38652456 G A TNS4 Silent p.A74A 0.26 TCGA-EE-A2MS-06 17 38953483 38953483 C T KRT28 Missense_Mutation p.M247I 0.43 tolerated(0.1) benign(0.072) TCGA-EE-A2MS-06 17 39017907 39017907 G A KRT12 3'UTR 0.38 TCGA-EE-A2MS-06 17 39019775 39019775 G A KRT12 Nonsense_Mutation p.Q353* 0.13 TCGA-EE-A2MS-06 17 39114790 39114790 C T KRT39 3'UTR 0.41 TCGA-EE-A2MS-06 17 39137388 39137388 G A KRT40 Missense_Mutation p.R235C 0.43 deleterious(0.02) possibly_damaging(0.828) TCGA-EE-A2MS-06 17 3924426 3924426 G A ZZEF1 Silent p.F2467F 0.26 TCGA-EE-A2MS-06 17 39316651 39316651 G A KRTAP4-4 Missense_Mutation p.T98I 0.29 unknown(0) TCGA-EE-A2MS-06 17 39471555 39471555 G A KRTAP17-1 3'UTR 0.44 TCGA-EE-A2MS-06 17 39578669 39578669 C T KRT37 Silent p.R250R 0.25 TCGA-EE-A2MS-06 17 39740105 39740105 C T KRT14 Silent p.V278V 0.39 TCGA-EE-A2MS-06 17 39966001 39966001 G A LEPREL4 Silent p.F291F 0.53 TCGA-EE-A2MS-06 17 40042510 40042510 G A ACLY Silent p.L643L 0.18 TCGA-EE-A2MS-06 17 40094955 40094955 G A TTC25 RNA 0.32 TCGA-EE-A2MS-06 17 40169492 40169492 T A NKIRAS2 5'UTR 0.32 TCGA-EE-A2MS-06 17 40266928 40266928 G A KAT2A Silent p.I667I 0.38 TCGA-EE-A2MS-06 17 40278855 40278855 G A RAB5C Silent p.A184A 0.35 TCGA-EE-A2MS-06 17 40474506 40474506 G A STAT3 Missense_Mutation p.T632I 0.17 tolerated(0.17) possibly_damaging(0.69) TCGA-EE-A2MS-06 17 40620102 40620102 C T ATP6V0A1 Missense_Mutation p.P91S 0.25 deleterious(0.02) possibly_damaging(0.878) TCGA-EE-A2MS-06 17 40693186 40693186 C T NAGLU Missense_Mutation p.A328V 0.38 deleterious(0.01) possibly_damaging(0.772) TCGA-EE-A2MS-06 17 40843839 40843839 C T CNTNAP1 Missense_Mutation p.T787I 0.44 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A2MS-06 17 40946635 40946635 G A WNK4 Missense_Mutation p.E767K 0.38 tolerated(0.18) unknown(0) TCGA-EE-A2MS-06 17 41223166 41223166 G A BRCA1 Missense_Mutation p.R1610C 0.24 deleterious(0.01) benign(0.299) TCGA-EE-A2MS-06 17 41956706 41956706 G A MPP2 Silent p.F473F 0.28 TCGA-EE-A2MS-06 17 42155754 42155754 G A HDAC5 Missense_Mutation p.P1121L 0.42 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 17 42188139 42188139 C G HDAC5 Missense_Mutation p.E19Q 0.16 tolerated_low_confidence(0.2) probably_damaging(0.979) TCGA-EE-A2MS-06 17 42188140 42188140 C T HDAC5 Silent p.L18L 0.17 TCGA-EE-A2MS-06 17 42330638 42330638 C T SLC4A1 Missense_Mutation p.G720E 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 17 42449737 42449737 C T ITGA2B Missense_Mutation p.E1039K 0.30 deleterious_low_confidence(0) benign(0.292) TCGA-EE-A2MS-06 17 42478219 42478219 G A GPATCH8 Missense_Mutation p.P409L 0.16 tolerated(0.1) possibly_damaging(0.791) TCGA-EE-A2MS-06 17 42478220 42478220 G A GPATCH8 Missense_Mutation p.P409S 0.16 tolerated(1) benign(0.228) TCGA-EE-A2MS-06 17 42636334 42636334 C T FZD2 Silent p.I426I 0.24 TCGA-EE-A2MS-06 17 42990641 42990641 G A GFAP Missense_Mutation p.S259F 0.30 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MS-06 17 43003447 43003447 G A KIF18B 3'UTR 0.46 TCGA-EE-A2MS-06 17 44067303 44067303 C T MAPT Silent p.H414H 0.40 TCGA-EE-A2MS-06 17 45219350 45219350 A C CDC27 Missense_Mutation p.L480V 0.41 tolerated(0.21) benign(0.011) TCGA-EE-A2MS-06 17 45669422 45669422 A T NPEPPS Missense_Mutation p.D454V 0.38 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A2MS-06 17 45753818 45753818 C T KPNB1 Silent p.P652P 0.33 TCGA-EE-A2MS-06 17 46056265 46056265 C G CDK5RAP3 Missense_Mutation p.F353L 0.37 deleterious(0.01) benign(0.181) TCGA-EE-A2MS-06 17 46056266 46056266 C T CDK5RAP3 Missense_Mutation p.L354F 0.38 tolerated(0.07) benign(0.014) TCGA-EE-A2MS-06 17 46134780 46134780 C T NFE2L1 Silent p.L296L 0.19 TCGA-EE-A2MS-06 17 46262156 46262156 G A SKAP1 Missense_Mutation p.P166S 0.18 tolerated(0.49) benign(0.241) TCGA-EE-A2MS-06 17 46265269 46265269 C T SKAP1 Silent p.S126S 0.37 TCGA-EE-A2MS-06 17 4637839 4637839 C T CXCL16 Intron 0.33 TCGA-EE-A2MS-06 17 46628188 46628188 G A HOXB3 Silent p.P268P 0.41 TCGA-EE-A2MS-06 17 46673838 46673838 C T HOXB6 Silent p.E204E 0.43 TCGA-EE-A2MS-06 17 47295266 47295266 C T ABI3 Missense_Mutation p.H151Y 0.46 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 17 47583706 47583706 C T NGFR Missense_Mutation p.P85L 0.40 tolerated(0.05) benign(0.153) TCGA-EE-A2MS-06 17 47700193 47700193 G A SPOP 5'UTR 0.49 TCGA-EE-A2MS-06 17 48051138 48051138 G A DLX4 Missense_Mutation p.G185E 0.34 tolerated(0.26) benign(0.011) TCGA-EE-A2MS-06 17 48072125 48072125 A T DLX3 Missense_Mutation p.Y80N 0.43 deleterious(0.04) probably_damaging(0.961) TCGA-EE-A2MS-06 17 48559688 48559688 C T RSAD1 Silent p.F237F 0.26 TCGA-EE-A2MS-06 17 48559767 48559767 C T RSAD1 Missense_Mutation p.L264F 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2MS-06 17 48701285 48701285 G A CACNA1G Silent p.T2026T 0.16 TCGA-EE-A2MS-06 17 4883402 4883402 G A CAMTA2 Silent p.A428A 0.48 TCGA-EE-A2MS-06 17 48940550 48940550 G A TOB1 Missense_Mutation p.P277S 0.41 tolerated(0.09) benign(0.03) TCGA-EE-A2MS-06 17 49197823 49197823 G A SPAG9 Silent p.F65F 0.17 TCGA-EE-A2MS-06 17 5076112 5076112 G A USP6 Missense_Mutation p.D1354N 0.20 tolerated_low_confidence(0.15) probably_damaging(0.951) TCGA-EE-A2MS-06 17 5084712 5084712 G A ZNF594 3'UTR 0.39 TCGA-EE-A2MS-06 17 5085852 5085852 G A ZNF594 Missense_Mutation p.A567V 0.59 deleterious(0) possibly_damaging(0.534) TCGA-EE-A2MS-06 17 5086309 5086309 G A ZNF594 Nonsense_Mutation p.Q415* 0.16 TCGA-EE-A2MS-06 17 53078208 53078208 A T STXBP4 Missense_Mutation p.T180S 0.46 tolerated(0.48) benign(0.016) TCGA-EE-A2MS-06 17 5312176 5312176 G A NUP88 Missense_Mutation p.P245L 0.53 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2MS-06 17 54892321 54892321 G A C17orf67 Missense_Mutation p.P22L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 17 56247806 56247806 C T OR4D2 Missense_Mutation p.P264S 0.35 tolerated(0.79) benign(0.034) TCGA-EE-A2MS-06 17 56329578 56329578 G A LPO Silent p.G272G 0.25 TCGA-EE-A2MS-06 17 56388554 56388554 G A BZRAP1 Silent p.P1034P 0.37 TCGA-EE-A2MS-06 17 56643154 56643154 C T TEX14 Silent p.T1352T 0.61 TCGA-EE-A2MS-06 17 56692659 56692659 G A TEX14 Missense_Mutation p.P278L 0.20 deleterious(0.02) possibly_damaging(0.71) TCGA-EE-A2MS-06 17 56774133 56774133 G A RAD51C Missense_Mutation p.G162R 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 17 57288906 57288906 C T SMG8 Silent p.N498N 0.16 TCGA-EE-A2MS-06 17 57738836 57738836 G A CLTC Silent p.R400R 0.33 TCGA-EE-A2MS-06 17 59760695 59760695 G A BRIP1 Missense_Mutation p.P1238S 0.41 tolerated_low_confidence(0.19) benign(0.015) TCGA-EE-A2MS-06 17 60106997 60106997 A G MED13 Silent p.A396A 0.30 TCGA-EE-A2MS-06 17 60754805 60754805 C T MRC2 Silent p.P670P 0.49 TCGA-EE-A2MS-06 17 60768038 60768038 G A MRC2 Missense_Mutation p.E1310K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 60814508 60814508 C T MARCH10 Missense_Mutation p.G241R 0.43 deleterious(0.02) benign(0.172) TCGA-EE-A2MS-06 17 61497945 61497945 C T TANC2 Silent p.S1534S 0.27 TCGA-EE-A2MS-06 17 61566478 61566478 C T ACE Missense_Mutation p.P876S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 61571337 61571337 C T ACE Missense_Mutation p.P1064L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 61571734 61571734 C T ACE Silent p.L1095L 0.29 TCGA-EE-A2MS-06 17 62034588 62034588 C T SCN4A Missense_Mutation p.M770I 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 17 62496442 62496442 G A DDX5 Missense_Mutation p.R482C 0.45 deleterious(0.03) possibly_damaging(0.614) TCGA-EE-A2MS-06 17 63223473 63223473 C T RGS9 Missense_Mutation p.S658L 0.34 tolerated_low_confidence(0.31) benign(0.008) TCGA-EE-A2MS-06 17 63695 63695 C T RPH3AL Missense_Mutation p.R299Q 0.24 tolerated_low_confidence(0.51) benign(0.004) TCGA-EE-A2MS-06 17 65156472 65156472 G A HELZ Silent p.L694L 0.28 TCGA-EE-A2MS-06 17 6554934 6554934 C T MED31 5'UTR 0.79 TCGA-EE-A2MS-06 17 663430 663430 G A GLOD4 Missense_Mutation p.P294S 0.16 tolerated(0.62) benign(0.001) TCGA-EE-A2MS-06 17 66431803 66431803 G A WIPI1 Silent p.T193T 0.24 TCGA-EE-A2MS-06 17 66871789 66871789 C T ABCA8 Missense_Mutation p.D1446N 0.41 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 17 66928584 66928584 G A ABCA8 Silent p.F214F 0.17 TCGA-EE-A2MS-06 17 66982341 66982341 C T ABCA9 Missense_Mutation p.G1391D 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 67012496 67012496 C T ABCA9 Silent p.R979R 0.46 TCGA-EE-A2MS-06 17 68129217 68129217 G A KCNJ16 Missense_Mutation p.G330E 0.18 tolerated(0.76) benign(0.038) TCGA-EE-A2MS-06 17 6978411 6978411 C T CLEC10A Missense_Mutation p.E305K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 17 6980215 6980215 G A CLEC10A Silent p.S92S 0.42 TCGA-EE-A2MS-06 17 7107049 7107049 G A DLG4 Silent p.I142I 0.25 TCGA-EE-A2MS-06 17 71197773 71197773 C T COG1 Missense_Mutation p.L603F 0.15 tolerated(0.33) possibly_damaging(0.463) TCGA-EE-A2MS-06 17 71427751 71427751 G A SDK2 Missense_Mutation p.S457L 0.24 deleterious(0.01) benign(0.072) TCGA-EE-A2MS-06 17 72278110 72278110 C T DNAI2 Nonsense_Mutation p.Q52* 0.46 TCGA-EE-A2MS-06 17 7230825 7230825 G A NEURL4 Missense_Mutation p.P221S 0.22 tolerated(0.32) benign(0) TCGA-EE-A2MS-06 17 72338102 72338102 G A KIF19 Missense_Mutation p.A70T 0.38 tolerated(0.09) possibly_damaging(0.596) TCGA-EE-A2MS-06 17 72469699 72469699 G A CD300A Missense_Mutation p.R22K 0.37 tolerated(0.37) benign(0.009) TCGA-EE-A2MS-06 17 7247255 7247255 C T ACAP1 Nonsense_Mutation p.R217* 0.70 TCGA-EE-A2MS-06 17 72741381 72741381 G A RAB37 Intron 0.31 TCGA-EE-A2MS-06 17 72851243 72851243 G A GRIN2C 5'UTR 0.13 TCGA-EE-A2MS-06 17 72862330 72862330 G A FDXR Missense_Mutation p.P187S 0.42 deleterious(0.03) possibly_damaging(0.485) TCGA-EE-A2MS-06 17 72926903 72926903 G A OTOP2 Silent p.V391V 0.42 TCGA-EE-A2MS-06 17 72945387 72945387 G A OTOP3 Missense_Mutation p.G556E 0.22 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MS-06 17 72954853 72954853 G A HID1 Silent p.F385F 0.56 TCGA-EE-A2MS-06 17 73214293 73214293 C T NUP85 Silent p.L163L 0.21 TCGA-EE-A2MS-06 17 73257923 73257923 C T MRPS7 5'UTR 0.25 TCGA-EE-A2MS-06 17 7330870 7330870 G A C17orf74 3'UTR 0.30 TCGA-EE-A2MS-06 17 7330876 7330876 G A C17orf74 3'UTR 0.35 TCGA-EE-A2MS-06 17 7346306 7346306 G A FGF11 Intron 0.64 TCGA-EE-A2MS-06 17 73539482 73539482 C T LLGL2 5'UTR 0.31 TCGA-EE-A2MS-06 17 73758813 73758813 G A GALK1 Silent p.L255L 0.43 TCGA-EE-A2MS-06 17 74004206 74004206 C T EVPL Missense_Mutation p.G1694R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 74014603 74014603 C T EVPL Missense_Mutation p.G455R 0.58 deleterious(0.02) possibly_damaging(0.852) TCGA-EE-A2MS-06 17 74015058 74015058 C T EVPL Silent p.Q407Q 0.27 TCGA-EE-A2MS-06 17 7405248 7405248 C T POLR2A Silent p.V793V 0.55 TCGA-EE-A2MS-06 17 74623646 74623646 T G ST6GALNAC1 Missense_Mutation p.K284T 0.48 possibly_damaging(0.829) TCGA-EE-A2MS-06 17 7604071 7604071 C T WRAP53 Nonsense_Mutation p.R219* 0.22 TCGA-EE-A2MS-06 17 76094559 76094559 C T TNRC6C Missense_Mutation p.P1517L 0.21 deleterious(0.02) possibly_damaging(0.575) TCGA-EE-A2MS-06 17 76400049 76400049 C T PGS1 Silent p.A427A 0.31 TCGA-EE-A2MS-06 17 7644283 7644283 C T DNAH2 Silent p.L554L 0.53 TCGA-EE-A2MS-06 17 76491083 76491083 G A DNAH17 Silent p.F1986F 0.64 TCGA-EE-A2MS-06 17 76498986 76498986 G A DNAH17 Silent p.I1684I 0.24 TCGA-EE-A2MS-06 17 76526474 76526474 G A DNAH17 Missense_Mutation p.R1079C 0.11 possibly_damaging(0.884) TCGA-EE-A2MS-06 17 76567725 76567725 C T DNAH17 Missense_Mutation p.E227K 0.36 probably_damaging(0.999) TCGA-EE-A2MS-06 17 7682739 7682739 C T DNAH2 Missense_Mutation p.P1907L 0.42 probably_damaging(1) TCGA-EE-A2MS-06 17 76972097 76972097 A C LGALS3BP Missense_Mutation p.L65R 0.47 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MS-06 17 76993104 76993104 G A CANT1 Silent p.L201L 0.23 TCGA-EE-A2MS-06 17 7701533 7701533 C T DNAH2 Silent p.I2763I 0.26 TCGA-EE-A2MS-06 17 77984358 77984358 G A TBC1D16 Missense_Mutation p.P127L 0.23 tolerated(0.26) benign(0.009) TCGA-EE-A2MS-06 17 7798840 7798840 T C CHD3 Missense_Mutation p.S622P 0.17 possibly_damaging(0.637) TCGA-EE-A2MS-06 17 7806292 7806292 C T CHD3 Silent p.T1195T 0.20 TCGA-EE-A2MS-06 17 78084763 78084763 C T GAA Silent p.F525F 0.36 TCGA-EE-A2MS-06 17 78086482 78086482 C T GAA Silent p.S620S 0.54 TCGA-EE-A2MS-06 17 78162266 78162266 G A CARD14 Missense_Mutation p.D256N 0.33 tolerated(0.43) benign(0.01) TCGA-EE-A2MS-06 17 7827787 7827787 G A KCNAB3 Silent p.N219N 0.22 TCGA-EE-A2MS-06 17 78866666 78866666 G A RPTOR Missense_Mutation p.E747K 0.42 tolerated(0.33) benign(0.021) TCGA-EE-A2MS-06 17 7909860 7909860 C T GUCY2D Silent p.F402F 0.17 TCGA-EE-A2MS-06 17 79193716 79193716 G A AZI1 Silent p.S47S 0.54 TCGA-EE-A2MS-06 17 79225202 79225202 C T SLC38A10 Intron 0.45 TCGA-EE-A2MS-06 17 79408918 79408918 C T RP11-1055B8.7 Silent p.F181F 0.20 TCGA-EE-A2MS-06 17 79410252 79410252 C T RP11-1055B8.7 Missense_Mutation p.P626L 0.13 probably_damaging(0.999) TCGA-EE-A2MS-06 17 79514790 79514790 G A C17orf70 Intron 0.57 TCGA-EE-A2MS-06 17 79650601 79650601 C T ARL16 Missense_Mutation p.G53S 0.27 tolerated(0.25) benign(0.292) TCGA-EE-A2MS-06 17 79827093 79827093 G A ARHGDIA Missense_Mutation p.S124F 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 79866923 79866923 G A PCYT2 Intron 0.15 TCGA-EE-A2MS-06 17 79866924 79866924 G A PCYT2 Intron 0.15 TCGA-EE-A2MS-06 17 79913410 79913410 G A NOTUM Silent p.F333F 0.38 TCGA-EE-A2MS-06 17 79916234 79916234 C T NOTUM Missense_Mutation p.G190E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 79916235 79916235 C T NOTUM Missense_Mutation p.G190R 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 17 7999845 7999845 G A ALOXE3 3'UTR 0.43 TCGA-EE-A2MS-06 17 80274552 80274552 G A CD7 Silent p.L130L 0.41 TCGA-EE-A2MS-06 17 80320274 80320274 G A TEX19 Nonsense_Mutation p.W83* 0.18 TCGA-EE-A2MS-06 17 80332317 80332317 G A UTS2R Silent p.P39P 0.50 TCGA-EE-A2MS-06 17 80352243 80352243 G A OGFOD3 3'UTR 0.45 TCGA-EE-A2MS-06 17 80442739 80442739 C T NARF Missense_Mutation p.S295L 0.38 deleterious(0) probably_damaging(0.911) TCGA-EE-A2MS-06 17 8159837 8159837 C T PFAS Intron 0.68 TCGA-EE-A2MS-06 17 8770854 8770854 G T PIK3R6 5'UTR 0.11 TCGA-EE-A2MS-06 17 8808219 8808219 G A PIK3R5 Missense_Mutation p.P96L 0.55 deleterious(0) possibly_damaging(0.901) TCGA-EE-A2MS-06 17 9631925 9631925 C T USP43 Missense_Mutation p.T997I 0.25 deleterious(0) possibly_damaging(0.638) TCGA-EE-A2MS-06 17 9674859 9674859 G A DHRS7C Silent p.F295F 0.67 TCGA-EE-A2MS-06 17 9765355 9765355 G A GLP2R Missense_Mutation p.G335E 0.56 tolerated(1) benign(0.01) TCGA-EE-A2MS-06 18 13740181 13740181 C T RNMT Missense_Mutation p.S232F 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 18 14542672 14542672 G A POTEC Silent p.I158I 0.34 TCGA-EE-A2MS-06 18 19282424 19282424 G A ABHD3 Missense_Mutation p.S121L 0.58 tolerated(1) benign(0.03) TCGA-EE-A2MS-06 18 19429261 19429261 C T MIB1 Missense_Mutation p.P833L 0.30 tolerated(0.06) probably_damaging(0.995) TCGA-EE-A2MS-06 18 20877878 20877878 T C TMEM241 3'UTR 0.44 TCGA-EE-A2MS-06 18 21395432 21395432 G A LAMA3 Missense_Mutation p.G648R 0.29 benign(0.008) TCGA-EE-A2MS-06 18 21441693 21441693 G A LAMA3 Missense_Mutation p.M1502I 0.55 benign(0.007) TCGA-EE-A2MS-06 18 21534610 21534610 T C LAMA3 Nonstop_Mutation p.*3334Qext*64 0.57 TCGA-EE-A2MS-06 18 22056938 22056938 G A HRH4 Missense_Mutation p.M195I 0.25 tolerated(0.37) benign(0.004) TCGA-EE-A2MS-06 18 2590052 2590052 C T NDC80 Silent p.S302S 0.30 TCGA-EE-A2MS-06 18 2772321 2772321 C T SMCHD1 Missense_Mutation p.S1709L 0.64 tolerated(0.5) benign(0.002) TCGA-EE-A2MS-06 18 28574254 28574254 G A DSC3 Missense_Mutation p.P860S 0.29 tolerated(0.06) possibly_damaging(0.874) TCGA-EE-A2MS-06 18 28918289 28918289 G A DSG1 Missense_Mutation p.G426E 0.62 deleterious(0.01) benign(0.235) TCGA-EE-A2MS-06 18 28934722 28934722 G A DSG1 Missense_Mutation p.D855N 0.51 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 18 28968840 28968840 T A DSG4 Missense_Mutation p.Y126N 0.29 tolerated(0.38) benign(0.026) TCGA-EE-A2MS-06 18 29121276 29121276 A G DSG2 Missense_Mutation p.K667R 0.25 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A2MS-06 18 29206972 29206972 G A B4GALT6 Missense_Mutation p.L297F 0.19 tolerated(0.08) possibly_damaging(0.631) TCGA-EE-A2MS-06 18 29206973 29206973 G A B4GALT6 Silent p.D296D 0.19 TCGA-EE-A2MS-06 18 29867085 29867085 G A GAREM Missense_Mutation p.S492F 0.28 tolerated(0.24) benign(0.027) TCGA-EE-A2MS-06 18 31324044 31324044 C T ASXL3 Missense_Mutation p.P1411L 0.52 possibly_damaging(0.747) TCGA-EE-A2MS-06 18 31432826 31432826 G A NOL4 Missense_Mutation p.L633F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 18 335150 335150 C T COLEC12 Missense_Mutation p.G470R 0.82 deleterious(0) unknown(0) TCGA-EE-A2MS-06 18 42281537 42281537 G A SETBP1 Missense_Mutation p.D76N 0.53 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A2MS-06 18 42530992 42530992 C T SETBP1 Missense_Mutation p.P563S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 18 43224001 43224001 C T SLC14A2 Silent p.F409F 0.26 TCGA-EE-A2MS-06 18 43262489 43262489 C T SLC14A2 3'UTR 0.60 TCGA-EE-A2MS-06 18 43820095 43820095 G A C18orf25 Silent p.Q280Q 0.25 TCGA-EE-A2MS-06 18 44036631 44036631 C T RNF165 3'UTR 0.64 TCGA-EE-A2MS-06 18 46645263 46645263 G A DYM Nonsense_Mutation p.R533* 0.22 TCGA-EE-A2MS-06 18 47566544 47566544 G A MYO5B Silent p.F93F 0.53 TCGA-EE-A2MS-06 18 48510681 48510681 C T ELAC1 Missense_Mutation p.P125S 0.23 tolerated(0.12) benign(0.3) TCGA-EE-A2MS-06 18 50866258 50866258 T A DCC Nonsense_Mutation p.Y780* 0.27 TCGA-EE-A2MS-06 18 50929217 50929217 C T DCC Silent p.V963V 0.27 TCGA-EE-A2MS-06 18 50961561 50961561 G A DCC Missense_Mutation p.D1071N 0.29 deleterious(0.01) benign(0.012) TCGA-EE-A2MS-06 18 51888159 51888159 C T C18orf54 Missense_Mutation p.P144S 0.18 tolerated(0.43) possibly_damaging(0.685) TCGA-EE-A2MS-06 18 52608269 52608269 C T CCDC68 Missense_Mutation p.E55K 0.19 tolerated(0.08) benign(0.128) TCGA-EE-A2MS-06 18 52921919 52921919 C T TCF4 Missense_Mutation p.E489K 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A2MS-06 18 54385192 54385192 C T WDR7 Intron 0.29 TCGA-EE-A2MS-06 18 54814880 54814880 G A BOD1L2 Missense_Mutation p.E113K 0.24 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MS-06 18 56203321 56203321 C T ALPK2 Silent p.K1366K 0.60 TCGA-EE-A2MS-06 18 56587472 56587472 G A ZNF532 Silent p.K651K 0.21 TCGA-EE-A2MS-06 18 57021803 57021803 G A LMAN1 Missense_Mutation p.P163S 0.11 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2MS-06 18 59483735 59483735 G A RNF152 5'UTR 0.67 TCGA-EE-A2MS-06 18 59855179 59855179 G T KIAA1468 Missense_Mutation p.M147I 0.36 tolerated_low_confidence(0.46) benign(0.001) TCGA-EE-A2MS-06 18 60646130 60646130 C T PHLPP1 Silent p.F1540F 0.25 TCGA-EE-A2MS-06 18 61170800 61170800 G A SERPINB5 Missense_Mutation p.E325K 0.30 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2MS-06 18 61306491 61306491 C T SERPINB4 Silent p.L232L 0.28 TCGA-EE-A2MS-06 18 61323108 61323108 C T SERPINB3 Missense_Mutation p.G319E 0.21 tolerated(0.67) benign(0.008) TCGA-EE-A2MS-06 18 61324626 61324626 G A SERPINB3 Missense_Mutation p.P164S 0.23 tolerated(0.11) possibly_damaging(0.599) TCGA-EE-A2MS-06 18 61582839 61582839 C T SERPINB10 Missense_Mutation p.S32F 0.22 deleterious(0) possibly_damaging(0.549) TCGA-EE-A2MS-06 18 6263963 6263963 C A L3MBTL4 Missense_Mutation p.V68F 0.82 deleterious(0.03) benign(0.197) TCGA-EE-A2MS-06 18 6263964 6263964 A G L3MBTL4 Silent p.P67P 0.81 TCGA-EE-A2MS-06 18 6973112 6973112 G A LAMA1 Silent p.L2240L 0.77 TCGA-EE-A2MS-06 18 6983119 6983119 C T LAMA1 Silent p.R1925R 0.80 TCGA-EE-A2MS-06 18 6997782 6997782 C T LAMA1 Missense_Mutation p.G1589R 0.79 tolerated(0.67) benign(0.068) TCGA-EE-A2MS-06 18 70417313 70417313 C T NETO1 Missense_Mutation p.D509N 0.64 deleterious_low_confidence(0.04) benign(0.107) TCGA-EE-A2MS-06 18 70423345 70423345 G T NETO1 Missense_Mutation p.N302K 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 18 70526247 70526247 C T NETO1 Missense_Mutation p.E95K 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 18 70526248 70526248 C T NETO1 Nonsense_Mutation p.W94* 0.23 TCGA-EE-A2MS-06 18 76754300 76754300 C T SALL3 Missense_Mutation p.P770L 0.17 deleterious(0.05) benign(0.014) TCGA-EE-A2MS-06 18 77624193 77624193 G A KCNG2 Missense_Mutation p.G176S 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A2MS-06 18 8819049 8819049 G T SOGA2 Missense_Mutation p.S983I 0.89 deleterious(0.03) benign(0.271) TCGA-EE-A2MS-06 18 9208710 9208710 C T ANKRD12 Silent p.S120S 0.78 TCGA-EE-A2MS-06 19 10071421 10071421 C T COL5A3 Missense_Mutation p.S1666N 0.19 unknown(0) TCGA-EE-A2MS-06 19 10092762 10092762 G T COL5A3 Silent p.P813P 0.24 TCGA-EE-A2MS-06 19 1037643 1037643 G A CNN2 Missense_Mutation p.G225E 0.55 deleterious(0.02) benign(0.358) TCGA-EE-A2MS-06 19 10446489 10446489 C T ICAM3 Silent p.E169E 0.33 TCGA-EE-A2MS-06 19 1056159 1056159 C T ABCA7 Missense_Mutation p.P1445S 0.30 tolerated(0.89) possibly_damaging(0.742) TCGA-EE-A2MS-06 19 10578042 10578042 C T PDE4A Silent p.F802F 0.50 TCGA-EE-A2MS-06 19 10610578 10610578 G A KEAP1 Silent p.P44P 0.48 TCGA-EE-A2MS-06 19 10687881 10687881 G A AP1M2 Missense_Mutation p.S347F 0.31 deleterious(0) probably_damaging(0.926) TCGA-EE-A2MS-06 19 11227540 11227540 C T LDLR Missense_Mutation p.L571F 0.30 tolerated(0.16) benign(0.09) TCGA-EE-A2MS-06 19 12155424 12155424 G A ZNF878 Silent p.F264F 0.62 TCGA-EE-A2MS-06 19 12186404 12186404 C T ZNF844 Nonsense_Mutation p.Q157* 0.35 TCGA-EE-A2MS-06 19 12361119 12361119 G A ZNF44 Missense_Mutation p.P33L 0.59 benign(0.002) TCGA-EE-A2MS-06 19 12575350 12575350 G A ZNF709 Silent p.S462S 0.29 TCGA-EE-A2MS-06 19 12757361 12757361 C T MAN2B1 3'UTR 0.67 TCGA-EE-A2MS-06 19 13201181 13201181 C T NFIX Silent p.F441F 0.22 TCGA-EE-A2MS-06 19 13227068 13227068 G A TRMT1 Missense_Mutation p.P49L 0.23 deleterious(0) benign(0.297) TCGA-EE-A2MS-06 19 13325129 13325129 C T CACNA1A Missense_Mutation p.G1953E 0.48 probably_damaging(0.969) TCGA-EE-A2MS-06 19 13565990 13565990 C T CACNA1A Silent p.A110A 0.23 TCGA-EE-A2MS-06 19 13862488 13862488 G A CCDC130 5'UTR 0.50 TCGA-EE-A2MS-06 19 14231301 14231301 G A ASF1B Silent p.L193L 0.15 TCGA-EE-A2MS-06 19 14876547 14876547 G A EMR2 Missense_Mutation p.S235L 0.17 deleterious(0) probably_damaging(0.925) TCGA-EE-A2MS-06 19 1496322 1496322 G A REEP6 Nonsense_Mutation p.W129* 0.44 TCGA-EE-A2MS-06 19 15079196 15079196 C T SLC1A6 Missense_Mutation p.G156E 0.57 deleterious(0.03) benign(0.005) TCGA-EE-A2MS-06 19 15131400 15131400 C T CCDC105 Missense_Mutation p.S268F 0.62 deleterious(0.02) benign(0.202) TCGA-EE-A2MS-06 19 15290951 15290951 G A NOTCH3 Missense_Mutation p.P1087S 0.55 deleterious(0.03) benign(0.141) TCGA-EE-A2MS-06 19 15367916 15367916 G A BRD4 Silent p.S470S 0.34 TCGA-EE-A2MS-06 19 15367917 15367917 G A BRD4 Missense_Mutation p.S470F 0.35 possibly_damaging(0.485) TCGA-EE-A2MS-06 19 15726483 15726483 G A AD000091.2 5'Flank 0.43 TCGA-EE-A2MS-06 19 15730456 15730456 C T CYP4F8 RNA 0.21 TCGA-EE-A2MS-06 19 16345255 16345255 C T AP1M1 3'UTR 0.43 TCGA-EE-A2MS-06 19 16547762 16547762 G A EPS15L1 Missense_Mutation p.H120Y 0.52 tolerated(0.56) benign(0.119) TCGA-EE-A2MS-06 19 16547763 16547763 G A EPS15L1 Silent p.A119A 0.51 TCGA-EE-A2MS-06 19 16611668 16611668 C T C19orf44 Missense_Mutation p.S22F 0.24 tolerated(0.45) benign(0.082) TCGA-EE-A2MS-06 19 16770951 16770951 G A SMIM7 5'UTR 0.23 TCGA-EE-A2MS-06 19 16918402 16918402 G A NWD1 Missense_Mutation p.E1248K 0.23 tolerated(0.58) possibly_damaging(0.457) TCGA-EE-A2MS-06 19 16918626 16918626 C T NWD1 Silent p.V1322V 0.29 TCGA-EE-A2MS-06 19 17038874 17038874 C T CPAMD8 Silent p.L1152L 0.62 TCGA-EE-A2MS-06 19 17058029 17058029 C T CPAMD8 Missense_Mutation p.M886I 0.23 tolerated(0.26) benign(0.007) TCGA-EE-A2MS-06 19 17411956 17411956 G A ABHD8 Missense_Mutation p.T157I 0.57 tolerated(0.09) benign(0.104) TCGA-EE-A2MS-06 19 17759754 17759754 G A UNC13A Silent p.A521A 0.56 TCGA-EE-A2MS-06 19 1785507 1785507 G A ATP8B3 Silent p.V1118V 0.62 TCGA-EE-A2MS-06 19 17940954 17940954 C T JAK3 Missense_Mutation p.G1057D 0.85 tolerated(0.06) benign(0.344) TCGA-EE-A2MS-06 19 17940955 17940955 C T JAK3 Missense_Mutation p.G1057S 0.85 deleterious(0.02) possibly_damaging(0.626) TCGA-EE-A2MS-06 19 17954235 17954235 G A JAK3 Missense_Mutation p.A125V 0.15 tolerated(0.13) benign(0.193) TCGA-EE-A2MS-06 19 17972995 17972995 C T RPL18A Silent p.Y97Y 0.23 TCGA-EE-A2MS-06 19 17972996 17972996 C T RPL18A Missense_Mutation p.R98W 0.23 deleterious(0.04) possibly_damaging(0.57) TCGA-EE-A2MS-06 19 18004536 18004536 C T SLC5A5 Silent p.L594L 0.39 TCGA-EE-A2MS-06 19 18120704 18120704 G A ARRDC2 Silent p.Q235Q 0.37 TCGA-EE-A2MS-06 19 18180520 18180520 G A IL12RB1 Missense_Mutation p.P342L 0.29 tolerated(0.18) benign(0.015) TCGA-EE-A2MS-06 19 18368082 18368082 G A KIAA1683 Missense_Mutation p.H1338Y 0.74 tolerated(1) benign(0.004) TCGA-EE-A2MS-06 19 18376886 18376886 C T KIAA1683 Silent p.V488V 0.36 TCGA-EE-A2MS-06 19 18572430 18572430 C T ELL Silent p.L234L 0.20 TCGA-EE-A2MS-06 19 18707840 18707840 G A CRLF1 Silent p.P239P 0.40 TCGA-EE-A2MS-06 19 19112431 19112431 G A SUGP2 Silent p.S994S 0.17 TCGA-EE-A2MS-06 19 1917763 1917763 C T SCAMP4 Silent p.S26S 0.31 TCGA-EE-A2MS-06 19 19261560 19261560 G A MEF2BNB-MEF2B 5'UTR 0.18 TCGA-EE-A2MS-06 19 19356151 19356151 G A NCAN Silent p.P1174P 0.09 TCGA-EE-A2MS-06 19 19655067 19655067 C T CILP2 Silent p.P571P 0.21 TCGA-EE-A2MS-06 19 20045439 20045439 C T ZNF93 Missense_Mutation p.H559Y 0.15 deleterious(0.05) possibly_damaging(0.868) TCGA-EE-A2MS-06 19 20236104 20236104 C T CTC-260E6.2 RNA 0.23 TCGA-EE-A2MS-06 19 20727911 20727911 C T ZNF737 Silent p.E366E 0.38 TCGA-EE-A2MS-06 19 21477443 21477443 G A ZNF708 Nonsense_Mutation p.Q109* 0.29 TCGA-EE-A2MS-06 19 22157589 22157589 G A ZNF208 Nonsense_Mutation p.Q83* 0.24 TCGA-EE-A2MS-06 19 22939917 22939917 C T ZNF99 3'Flank 0.30 TCGA-EE-A2MS-06 19 2334633 2334633 C T AC004410.3 3'Flank 0.58 TCGA-EE-A2MS-06 19 2345250 2345250 G A SPPL2B Splice_Site 0.26 TCGA-EE-A2MS-06 19 23836932 23836932 G A ZNF675 Missense_Mutation p.S268F 0.17 tolerated(0.21) benign(0.001) TCGA-EE-A2MS-06 19 23926753 23926753 G A ZNF681 Silent p.P533P 0.19 TCGA-EE-A2MS-06 19 24309664 24309664 C T ZNF254 Missense_Mutation p.H288Y 0.17 deleterious(0.03) benign(0.216) TCGA-EE-A2MS-06 19 2762546 2762546 G A SGTA Silent p.N198N 0.22 TCGA-EE-A2MS-06 19 2810295 2810295 C T THOP1 Intron 0.22 TCGA-EE-A2MS-06 19 2991957 2991957 C T TLE6 Missense_Mutation p.P454L 0.38 tolerated(0.09) benign(0.146) TCGA-EE-A2MS-06 19 30934682 30934682 C T ZNF536 Silent p.P71P 0.54 TCGA-EE-A2MS-06 19 30935299 30935299 C T ZNF536 Missense_Mutation p.T277I 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 19 30936114 30936114 G A ZNF536 Missense_Mutation p.E549K 0.23 tolerated(0.06) benign(0.169) TCGA-EE-A2MS-06 19 31039452 31039452 C T ZNF536 Silent p.L976L 0.43 TCGA-EE-A2MS-06 19 3155833 3155833 C T GNA15 Silent p.V209V 0.33 TCGA-EE-A2MS-06 19 33464112 33464112 A G C19orf40 Missense_Mutation p.N4D 0.25 tolerated_low_confidence(0.5) benign(0.016) TCGA-EE-A2MS-06 19 3462890 3462890 C T NFIC 3'UTR 0.30 TCGA-EE-A2MS-06 19 34856261 34856261 C T GPI Silent p.F69F 0.19 TCGA-EE-A2MS-06 19 34890117 34890117 C T GPI Silent p.L436L 0.45 TCGA-EE-A2MS-06 19 34949692 34949692 C T UBA2 Missense_Mutation p.P422S 0.20 tolerated(0.16) benign(0.411) TCGA-EE-A2MS-06 19 35250816 35250816 G A ZNF599 Missense_Mutation p.S297F 0.52 deleterious(0.01) possibly_damaging(0.703) TCGA-EE-A2MS-06 19 35614187 35614187 G T FXYD3 Silent p.G131G 0.38 TCGA-EE-A2MS-06 19 35823659 35823659 G A CD22 Missense_Mutation p.D82N 0.33 tolerated(0.5) benign(0.004) TCGA-EE-A2MS-06 19 35835957 35835957 G A CD22 Nonsense_Mutation p.W712* 0.28 TCGA-EE-A2MS-06 19 35837639 35837639 G A CD22 3'UTR 0.33 TCGA-EE-A2MS-06 19 35842894 35842894 C T FFAR1 Missense_Mutation p.P147L 0.55 tolerated(0.22) benign(0.007) TCGA-EE-A2MS-06 19 35849881 35849881 C T FFAR3 Missense_Mutation p.P30L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 19 36034471 36034471 G A GAPDHS Intron 0.26 TCGA-EE-A2MS-06 19 36041514 36041514 C T ATP4A 3'UTR 0.19 TCGA-EE-A2MS-06 19 36168968 36168968 C T UPK1A 3'UTR 0.60 TCGA-EE-A2MS-06 19 36237794 36237794 C T PSENEN 3'UTR 0.60 TCGA-EE-A2MS-06 19 36591691 36591691 C T WDR62 Silent p.F927F 0.22 TCGA-EE-A2MS-06 19 36831728 36831728 G A ZFP14 Missense_Mutation p.H334Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 19 37210633 37210633 C T ZNF567 Missense_Mutation p.S305L 0.63 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A2MS-06 19 37367907 37367907 G A ZNF345 Missense_Mutation p.E59K 0.29 tolerated(0.14) possibly_damaging(0.489) TCGA-EE-A2MS-06 19 37406120 37406120 G A ZNF829 Silent p.L65L 0.29 TCGA-EE-A2MS-06 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.19 deleterious(0.04) benign(0.382) TCGA-EE-A2MS-06 19 3778381 3778381 G A MATK Missense_Mutation p.R443C 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 19 37904471 37904471 G A ZNF569 Silent p.F363F 0.27 TCGA-EE-A2MS-06 19 38028479 38028479 G A ZNF793 Missense_Mutation p.G307R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 19 38189499 38189499 C T ZNF607 Silent p.G511G 0.26 TCGA-EE-A2MS-06 19 38903659 38903659 G A RASGRP4 Nonsense_Mutation p.R483* 0.21 TCGA-EE-A2MS-06 19 39077171 39077171 C T RYR1 Silent p.F4992F 0.23 TCGA-EE-A2MS-06 19 39109830 39109830 C T EIF3K 5'UTR 0.73 TCGA-EE-A2MS-06 19 39294164 39294164 G A LGALS4 Missense_Mutation p.P190S 0.28 deleterious(0.03) possibly_damaging(0.51) TCGA-EE-A2MS-06 19 39294511 39294511 G A LGALS4 Missense_Mutation p.P167S 0.47 tolerated(0.14) benign(0.007) TCGA-EE-A2MS-06 19 39306353 39306353 G A ECH1 Missense_Mutation p.S296F 0.29 tolerated(0.17) possibly_damaging(0.86) TCGA-EE-A2MS-06 19 39522536 39522536 C T FBXO27 Missense_Mutation p.G111E 0.16 deleterious(0) possibly_damaging(0.526) TCGA-EE-A2MS-06 19 39600743 39600743 G A PAPL Silent p.R434R 0.28 TCGA-EE-A2MS-06 19 39660353 39660353 G T PAK4 Missense_Mutation p.V54F 0.44 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2MS-06 19 40197293 40197293 G A LGALS14 Silent p.G53G 0.28 TCGA-EE-A2MS-06 19 40224958 40224958 C T CLC Missense_Mutation p.E90K 0.33 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MS-06 19 40363962 40363962 C T FCGBP Missense_Mutation p.D4894N 0.17 probably_damaging(0.93) TCGA-EE-A2MS-06 19 40368657 40368657 G A FCGBP Missense_Mutation p.P4231S 0.23 possibly_damaging(0.876) TCGA-EE-A2MS-06 19 40420125 40420125 C T FCGBP Missense_Mutation p.D957N 0.65 possibly_damaging(0.836) TCGA-EE-A2MS-06 19 40424184 40424184 G A FCGBP Silent p.L673L 0.23 TCGA-EE-A2MS-06 19 40899780 40899780 G A PRX 3'UTR 0.57 TCGA-EE-A2MS-06 19 40899781 40899781 G A PRX 3'UTR 0.57 TCGA-EE-A2MS-06 19 40902667 40902667 G A PRX Missense_Mutation p.P531L 0.53 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MS-06 19 41086712 41086712 C T SHKBP1 Silent p.I238I 0.27 TCGA-EE-A2MS-06 19 41208578 41208578 G A ADCK4 Silent p.L274L 0.28 TCGA-EE-A2MS-06 19 41219975 41219975 C T ADCK4 Missense_Mutation p.G96R 0.27 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MS-06 19 41235202 41235202 C T ITPKC Missense_Mutation p.P451S 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2MS-06 19 41235203 41235203 C T ITPKC Missense_Mutation p.P451L 0.35 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 19 41245435 41245435 C T ITPKC Silent p.I674I 0.41 TCGA-EE-A2MS-06 19 41383128 41383128 C T CYP2A7 Silent p.K376K 0.21 TCGA-EE-A2MS-06 19 41518385 41518385 C T CYP2B6 Missense_Mutation p.P383S 0.22 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MS-06 19 4153747 4153747 G A CREB3L3 Translation_Start_Site p.M1? 0.74 deleterious_low_confidence(0.01) benign(0.026) TCGA-EE-A2MS-06 19 4154950 4154950 C T CREB3L3 Missense_Mutation p.L28F 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A2MS-06 19 4159755 4159755 C T CREB3L3 Silent p.L184L 0.24 TCGA-EE-A2MS-06 19 41600319 41600319 G A CYP2A13 Silent p.R381R 0.32 TCGA-EE-A2MS-06 19 41712463 41712463 G A CYP2S1 3'UTR 0.22 TCGA-EE-A2MS-06 19 42083671 42083671 C T CEACAM21 Missense_Mutation p.L62F 0.27 deleterious(0.04) benign(0.406) TCGA-EE-A2MS-06 19 42083815 42083815 C T CEACAM21 Nonsense_Mutation p.Q110* 0.59 TCGA-EE-A2MS-06 19 42085767 42085767 G A CEACAM21 Silent p.V162V 0.30 TCGA-EE-A2MS-06 19 42260607 42260607 C T CEA Intron 0.28 TCGA-EE-A2MS-06 19 42312871 42312871 C T CEACAM3 Missense_Mutation p.P149S 0.62 tolerated(0.18) benign(0.09) TCGA-EE-A2MS-06 19 42821907 42821907 G A TMEM145 Missense_Mutation p.G316D 0.51 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 19 42837848 42837848 C T MEGF8 Silent p.S93S 0.65 TCGA-EE-A2MS-06 19 42930782 42930782 C T LIPE Missense_Mutation p.E174K 0.28 deleterious_low_confidence(0.02) benign(0.084) TCGA-EE-A2MS-06 19 43099004 43099004 C T CEACAM8 5'UTR 0.45 TCGA-EE-A2MS-06 19 43099025 43099025 G A CEACAM8 5'UTR 0.33 TCGA-EE-A2MS-06 19 43269804 43269804 C T PSG8 5'UTR 0.26 TCGA-EE-A2MS-06 19 43371249 43371249 C T PSG1 3'Flank 0.23 TCGA-EE-A2MS-06 19 43411146 43411146 G A PSG6 Missense_Mutation p.L390F 0.53 tolerated(0.13) probably_damaging(0.936) TCGA-EE-A2MS-06 19 43421912 43421912 C T PSG6 Silent p.Q11Q 0.27 TCGA-EE-A2MS-06 19 43579635 43579635 G A PSG2 Nonsense_Mutation p.Q194* 0.25 TCGA-EE-A2MS-06 19 43679500 43679500 C T PSG5 Silent p.G277G 0.26 TCGA-EE-A2MS-06 19 43680064 43680064 C A PSG5 Missense_Mutation p.D223Y 0.52 deleterious(0.03) benign(0.001) TCGA-EE-A2MS-06 19 43690509 43690509 C T PSG5 Missense_Mutation p.G17R 0.21 tolerated(0.09) probably_damaging(0.991) TCGA-EE-A2MS-06 19 43690519 43690519 G A PSG5 Silent p.I13I 0.25 TCGA-EE-A2MS-06 19 43697414 43697414 G A PSG4 3'UTR 0.16 TCGA-EE-A2MS-06 19 43702150 43702150 G A PSG4 Silent p.L236L 0.24 TCGA-EE-A2MS-06 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.31 tolerated(0.18) possibly_damaging(0.507) TCGA-EE-A2MS-06 19 43762595 43762595 G A PSG9 Silent p.L334L 0.25 TCGA-EE-A2MS-06 19 43772110 43772110 C T PSG9 Missense_Mutation p.G86S 0.20 tolerated(0.47) benign(0.014) TCGA-EE-A2MS-06 19 4433242 4433242 C T CHAF1A Silent p.P793P 0.34 TCGA-EE-A2MS-06 19 44351537 44351537 C T ZNF283 Missense_Mutation p.P262S 0.54 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A2MS-06 19 44351843 44351843 C A ZNF283 Missense_Mutation p.Q364K 0.20 tolerated(0.58) benign(0.167) TCGA-EE-A2MS-06 19 44515476 44515476 C T ZNF230 Missense_Mutation p.L429F 0.48 tolerated(1) benign(0.003) TCGA-EE-A2MS-06 19 44636451 44636451 C T ZNF225 Missense_Mutation p.H562Y 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MS-06 19 4475533 4475533 C T HDGFRP2 Silent p.L81L 0.10 TCGA-EE-A2MS-06 19 44791712 44791712 G A ZNF235 Missense_Mutation p.P626S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 19 44793050 44793050 G A ZNF235 Missense_Mutation p.P180S 0.15 deleterious(0.04) benign(0.021) TCGA-EE-A2MS-06 19 44891833 44891833 G A ZNF285 Missense_Mutation p.H192Y 0.24 tolerated(0.14) benign(0) TCGA-EE-A2MS-06 19 44981195 44981195 G A ZNF180 Silent p.S501S 0.27 TCGA-EE-A2MS-06 19 45316839 45316839 G A BCAM Missense_Mutation p.G249D 0.34 tolerated(0.07) benign(0.287) TCGA-EE-A2MS-06 19 45495974 45495974 C T CLPTM1 Missense_Mutation p.P610L 0.27 tolerated(0.15) possibly_damaging(0.713) TCGA-EE-A2MS-06 19 4550191 4550191 C T SEMA6B Missense_Mutation p.M405I 0.55 deleterious(0) possibly_damaging(0.838) TCGA-EE-A2MS-06 19 4554460 4554460 C T SEMA6B Nonsense_Mutation p.W237* 0.40 TCGA-EE-A2MS-06 19 46032324 46032324 G A OPA3 Missense_Mutation p.S178F 0.31 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-EE-A2MS-06 19 46093988 46093988 G A GPR4 3'UTR 0.17 TCGA-EE-A2MS-06 19 46095087 46095087 G A GPR4 Missense_Mutation p.S13L 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 19 46176156 46176156 G A GIPR Missense_Mutation p.G110R 0.24 tolerated(0.53) benign(0.401) TCGA-EE-A2MS-06 19 46176157 46176157 G A GIPR Missense_Mutation p.G110E 0.24 tolerated(1) benign(0.021) TCGA-EE-A2MS-06 19 46206333 46206333 G A QPCTL 3'UTR 0.50 TCGA-EE-A2MS-06 19 46307585 46307585 G A RSPH6A Silent p.F526F 0.33 TCGA-EE-A2MS-06 19 46319749 46319749 G A SYMPK Silent p.P1115P 0.48 TCGA-EE-A2MS-06 19 46734089 46734089 G A IGFL1 3'UTR 0.44 TCGA-EE-A2MS-06 19 4679940 4679940 G A DPP9 Silent p.I831I 0.68 TCGA-EE-A2MS-06 19 47258805 47258805 A G FKRP Missense_Mutation p.N33S 0.28 tolerated(0.82) benign(0) TCGA-EE-A2MS-06 19 47569796 47569796 G A ZC3H4 Silent p.P1243P 0.50 TCGA-EE-A2MS-06 19 47824136 47824136 C T C5AR1 3'UTR 0.25 TCGA-EE-A2MS-06 19 47856916 47856916 C T DHX34 Missense_Mutation p.T210I 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 19 47856917 47856917 C T DHX34 Silent p.T210T 0.23 TCGA-EE-A2MS-06 19 47941103 47941103 C T SLC8A2 Intron 0.31 TCGA-EE-A2MS-06 19 48374808 48374808 C T SULT2A1 Nonsense_Mutation p.W254* 0.71 TCGA-EE-A2MS-06 19 4891445 4891445 C T ARRDC5 Silent p.Q214Q 0.18 TCGA-EE-A2MS-06 19 48968103 48968103 C T KCNJ14 3'UTR 0.24 TCGA-EE-A2MS-06 19 49122432 49122432 A C RPL18 5'UTR 0.38 TCGA-EE-A2MS-06 19 49348843 49348843 G A PLEKHA4 Missense_Mutation p.P533S 0.54 tolerated(0.3) benign(0.004) TCGA-EE-A2MS-06 19 49388798 49388798 C T TULP2 Missense_Mutation p.R323Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 19 49464237 49464237 C T BAX Silent p.S180S 0.33 TCGA-EE-A2MS-06 19 49464238 49464238 C T BAX Silent p.L181L 0.33 TCGA-EE-A2MS-06 19 49552102 49552102 C T CGB8 5'UTR 0.20 TCGA-EE-A2MS-06 19 49621263 49621263 A G LIN7B Missense_Mutation p.H197R 0.15 deleterious_low_confidence(0.04) benign(0.013) TCGA-EE-A2MS-06 19 49657807 49657807 C T HRC Missense_Mutation p.G230R 0.26 deleterious(0.03) benign(0.046) TCGA-EE-A2MS-06 19 49796617 49796617 G A SLC6A16 Silent p.F547F 0.48 TCGA-EE-A2MS-06 19 49983820 49983820 C T FLT3LG Silent p.V224V 0.19 TCGA-EE-A2MS-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.22 TCGA-EE-A2MS-06 19 50216832 50216832 C T CPT1C Silent p.S794S 0.32 TCGA-EE-A2MS-06 19 50249871 50249871 G A TSKS Missense_Mutation p.P283L 0.25 tolerated(0.1) benign(0.075) TCGA-EE-A2MS-06 19 50250056 50250056 C T TSKS Splice_Site p.X222_splice 0.14 TCGA-EE-A2MS-06 19 50386145 50386145 C T TBC1D17 Missense_Mutation p.S308L 0.27 deleterious(0.03) benign(0.103) TCGA-EE-A2MS-06 19 50387558 50387558 C T TBC1D17 Missense_Mutation p.P392L 0.49 tolerated(0.28) possibly_damaging(0.787) TCGA-EE-A2MS-06 19 50812353 50812353 G A MYH14 Missense_Mutation p.R1960K 0.26 tolerated(1) benign(0.009) TCGA-EE-A2MS-06 19 50826822 50826822 G A KCNC3 Missense_Mutation p.A463V 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 19 50958516 50958516 C T MYBPC2 Silent p.S722S 0.24 TCGA-EE-A2MS-06 19 51322477 51322477 G A KLK1 Silent p.I254I 0.54 TCGA-EE-A2MS-06 19 51330320 51330320 C T KLK15 Missense_Mutation p.E99K 0.31 tolerated(0.13) benign(0.06) TCGA-EE-A2MS-06 19 51361294 51361294 G A KLK3 Silent p.V72V 0.24 TCGA-EE-A2MS-06 19 51361325 51361325 C T KLK3 Missense_Mutation p.P83S 0.50 tolerated(0.47) benign(0.01) TCGA-EE-A2MS-06 19 51452135 51452135 C T KLK5 Missense_Mutation p.G191E 0.30 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MS-06 19 51452358 51452358 G A KLK5 Missense_Mutation p.R117C 0.33 tolerated(0.17) probably_damaging(0.994) TCGA-EE-A2MS-06 19 51483678 51483678 G A KLK7 Missense_Mutation p.S96L 0.30 tolerated(0.08) benign(0.023) TCGA-EE-A2MS-06 19 51630379 51630379 C T SIGLEC9 Missense_Mutation p.P281S 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MS-06 19 51671442 51671442 G A CTD-3187F8.14 Intron 0.29 TCGA-EE-A2MS-06 19 51768752 51768752 G A SIGLECL1 Missense_Mutation p.M51I 0.29 tolerated(0.15) benign(0.013) TCGA-EE-A2MS-06 19 51914315 51914315 C T SIGLEC10 3'UTR 0.21 TCGA-EE-A2MS-06 19 51984798 51984798 C T CEACAM18 Silent p.S245S 0.28 TCGA-EE-A2MS-06 19 52031024 52031024 G A SIGLEC6 Missense_Mutation p.P389S 0.51 tolerated(0.52) benign(0.092) TCGA-EE-A2MS-06 19 52131337 52131337 C T SIGLEC5 Silent p.E249E 0.59 TCGA-EE-A2MS-06 19 52132744 52132744 G A SIGLEC5 Silent p.D189D 0.67 TCGA-EE-A2MS-06 19 52196208 52196208 G A SPACA6P-AS RNA 0.38 TCGA-EE-A2MS-06 19 52222579 52222579 C G HAS1 Silent p.L194L 0.27 TCGA-EE-A2MS-06 19 52249761 52249761 G A FPR1 Missense_Mutation p.R163C 0.29 deleterious(0.02) possibly_damaging(0.773) TCGA-EE-A2MS-06 19 5225815 5225815 G A PTPRS Missense_Mutation p.S806F 0.17 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MS-06 19 52618571 52618571 G A ZNF616 Nonsense_Mutation p.Q616* 0.26 TCGA-EE-A2MS-06 19 52659810 52659810 G A ZNF836 Missense_Mutation p.H376Y 0.54 deleterious(0) possibly_damaging(0.866) TCGA-EE-A2MS-06 19 52942068 52942068 C T ZNF534 Missense_Mutation p.S465F 0.69 tolerated(0.69) benign(0.029) TCGA-EE-A2MS-06 19 53304429 53304429 G A ZNF28 Silent p.S223S 0.26 TCGA-EE-A2MS-06 19 53342833 53342833 G A ZNF468 3'UTR 0.75 TCGA-EE-A2MS-06 19 53384916 53384916 G A ZNF320 Missense_Mutation p.H155Y 0.23 tolerated(0.05) probably_damaging(0.977) TCGA-EE-A2MS-06 19 53418540 53418540 G A ZNF888 RNA 0.15 TCGA-EE-A2MS-06 19 53473696 53473696 G A ZNF702P RNA 0.60 TCGA-EE-A2MS-06 19 53741139 53741139 G A ZNF677 Missense_Mutation p.H281Y 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A2MS-06 19 53854487 53854487 C T ZNF845 Missense_Mutation p.H187Y 0.17 tolerated(0.94) probably_damaging(0.943) TCGA-EE-A2MS-06 19 53959970 53959970 C T ZNF761 RNA 0.55 TCGA-EE-A2MS-06 19 54201701 54201701 C T MIR523 RNA 0.23 TCGA-EE-A2MS-06 19 54206011 54206011 G A MIR518B RNA 0.25 TCGA-EE-A2MS-06 19 54215537 54215537 C T MIR517A RNA 0.30 TCGA-EE-A2MS-06 19 54307284 54307284 C T NLRP12 Missense_Mutation p.G836E 0.56 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A2MS-06 19 54313422 54313422 C T NLRP12 Missense_Mutation p.M497I 0.63 tolerated(0.25) benign(0.01) TCGA-EE-A2MS-06 19 54395012 54395012 G A PRKCG Missense_Mutation p.R205Q 0.18 tolerated(0.07) benign(0.003) TCGA-EE-A2MS-06 19 54444867 54444867 G A CACNG7 Missense_Mutation p.E190K 0.22 deleterious(0.03) benign(0.247) TCGA-EE-A2MS-06 19 54760538 54760538 C T LILRB5 Missense_Mutation p.E57K 0.24 tolerated(0.1) possibly_damaging(0.573) TCGA-EE-A2MS-06 19 54760539 54760539 C T LILRB5 Silent p.E56E 0.24 TCGA-EE-A2MS-06 19 54760628 54760628 G A LILRB5 Missense_Mutation p.P27S 0.18 deleterious(0.03) possibly_damaging(0.541) TCGA-EE-A2MS-06 19 54803727 54803727 C T LILRA3 Missense_Mutation p.A33T 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 19 54844824 54844824 C T LILRA4 3'UTR 0.62 TCGA-EE-A2MS-06 19 55014948 55014948 G A LAIR2 Missense_Mutation p.E23K 0.76 tolerated(0.35) benign(0.067) TCGA-EE-A2MS-06 19 55086387 55086387 C T LILRA2 Missense_Mutation p.S181F 0.38 tolerated(0.05) possibly_damaging(0.698) TCGA-EE-A2MS-06 19 55086467 55086467 C T LILRA2 Silent p.L208L 0.60 TCGA-EE-A2MS-06 19 55107259 55107259 C T LILRA1 Missense_Mutation p.P273S 0.29 tolerated(0.1) possibly_damaging(0.457) TCGA-EE-A2MS-06 19 55175661 55175661 C T LILRB4 Missense_Mutation p.S127L 0.18 tolerated(0.13) benign(0.175) TCGA-EE-A2MS-06 19 55177283 55177283 G A LILRB4 Missense_Mutation p.E259K 0.75 tolerated(1) benign(0.067) TCGA-EE-A2MS-06 19 55301597 55301597 G A CTB-61M7.1 RNA 0.20 TCGA-EE-A2MS-06 19 55301598 55301598 G A CTB-61M7.1 RNA 0.20 TCGA-EE-A2MS-06 19 55385768 55385768 T G FCAR Missense_Mutation p.L8R 0.18 deleterious(0) probably_damaging(0.913) TCGA-EE-A2MS-06 19 55420851 55420851 C T NCR1 Silent p.F201F 0.23 TCGA-EE-A2MS-06 19 55439120 55439120 G A NLRP7 Missense_Mutation p.P945L 0.40 deleterious(0) benign(0.104) TCGA-EE-A2MS-06 19 55597516 55597517 CC A EPS8L1 Frame_Shift_Del p.P536Tfs*15 0.12 TCGA-EE-A2MS-06 19 55708105 55708105 C T PTPRH Missense_Mutation p.G681E 0.12 possibly_damaging(0.742) TCGA-EE-A2MS-06 19 55816924 55816924 C T BRSK1 Silent p.I620I 0.20 TCGA-EE-A2MS-06 19 55997951 55997951 C T NAT14 Silent p.A83A 0.38 TCGA-EE-A2MS-06 19 56249719 56249719 C T NLRP9 Missense_Mutation p.D8N 0.24 tolerated(0.1) probably_damaging(0.992) TCGA-EE-A2MS-06 19 56321696 56321696 C T NLRP11 Missense_Mutation p.E94K 0.19 tolerated(0.05) probably_damaging(0.96) TCGA-EE-A2MS-06 19 56443522 56443522 G A NLRP13 Silent p.F52F 0.65 TCGA-EE-A2MS-06 19 56459198 56459198 G A NLRP8 5'UTR 0.64 TCGA-EE-A2MS-06 19 56539352 56539352 C T NLRP5 Missense_Mutation p.L585F 0.30 tolerated(0.08) possibly_damaging(0.83) TCGA-EE-A2MS-06 19 56688529 56688529 C T GALP Silent p.L18L 0.20 TCGA-EE-A2MS-06 19 56696612 56696612 C T GALP Silent p.P108P 0.55 TCGA-EE-A2MS-06 19 5687364 5687364 G A HSD11B1L Silent p.L160L 0.32 TCGA-EE-A2MS-06 19 57037279 57037279 A T ZNF471 Missense_Mutation p.I615F 0.30 deleterious(0.02) benign(0.143) TCGA-EE-A2MS-06 19 57286357 57286357 A C ZIM2 Missense_Mutation p.L428R 0.29 tolerated(0.49) benign(0.044) TCGA-EE-A2MS-06 19 57325127 57325127 C T PEG3 Silent p.E1561E 0.22 TCGA-EE-A2MS-06 19 57326893 57326893 C T PEG3 Missense_Mutation p.E973K 0.23 deleterious(0.04) possibly_damaging(0.61) TCGA-EE-A2MS-06 19 57641478 57641478 G A USP29 Missense_Mutation p.E479K 0.42 deleterious(0.01) benign(0.265) TCGA-EE-A2MS-06 19 57666704 57666704 G A DUXA Nonsense_Mutation p.Q159* 0.26 TCGA-EE-A2MS-06 19 5778497 5778497 C T CATSPERD Missense_Mutation p.S736F 0.34 tolerated(0.06) benign(0.087) TCGA-EE-A2MS-06 19 58084958 58084958 G A ZNF416 Missense_Mutation p.S105F 0.44 deleterious(0.03) benign(0.212) TCGA-EE-A2MS-06 19 58419803 58419803 G A ZNF417 3'UTR 0.58 TCGA-EE-A2MS-06 19 58439268 58439268 A C ZNF418 Missense_Mutation p.I94S 0.61 deleterious(0) possibly_damaging(0.84) TCGA-EE-A2MS-06 19 58489652 58489652 G A ZNF606 3'UTR 0.20 TCGA-EE-A2MS-06 19 58489985 58489985 G A ZNF606 Missense_Mutation p.S688F 0.66 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 19 58601523 58601523 G A ZSCAN18 Missense_Mutation p.P94S 0.25 tolerated(0.17) benign(0.164) TCGA-EE-A2MS-06 19 58601587 58601587 G A ZSCAN18 Silent p.A72A 0.20 TCGA-EE-A2MS-06 19 58601588 58601588 G A ZSCAN18 Missense_Mutation p.A72V 0.20 tolerated(0.23) benign(0.018) TCGA-EE-A2MS-06 19 58723952 58723952 C T ZNF274 Missense_Mutation p.H468Y 0.67 tolerated(0.21) benign(0.01) TCGA-EE-A2MS-06 19 58966606 58966606 C T ZNF324B Missense_Mutation p.P99S 0.49 tolerated(0.43) benign(0.004) TCGA-EE-A2MS-06 19 58967057 58967057 C T ZNF324B Missense_Mutation p.A249V 0.19 tolerated(0.06) benign(0.063) TCGA-EE-A2MS-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.16 TCGA-EE-A2MS-06 19 59022196 59022196 G A SLC27A5 Silent p.L264L 0.33 TCGA-EE-A2MS-06 19 5997073 5997073 C T RFX2 Missense_Mutation p.E671K 0.50 deleterious(0.01) possibly_damaging(0.873) TCGA-EE-A2MS-06 19 6312490 6312490 G A ACER1 Silent p.F38F 0.23 TCGA-EE-A2MS-06 19 6454035 6454035 G T SLC25A23 Missense_Mutation p.S287Y 0.18 deleterious(0) probably_damaging(0.971) TCGA-EE-A2MS-06 19 6477258 6477258 G A DENND1C Missense_Mutation p.P162S 0.61 tolerated(0.37) benign(0.079) TCGA-EE-A2MS-06 19 6744928 6744928 C T TRIP10 Missense_Mutation p.P303S 0.59 tolerated(0.57) probably_damaging(0.933) TCGA-EE-A2MS-06 19 686997 686997 G A PRSS57 Silent p.S191S 0.19 TCGA-EE-A2MS-06 19 7152894 7152894 C T INSR Missense_Mutation p.E692K 0.24 tolerated(0.09) benign(0.001) TCGA-EE-A2MS-06 19 7505331 7505331 C T ARHGEF18 Missense_Mutation p.P169S 0.24 tolerated(0.17) benign(0.036) TCGA-EE-A2MS-06 19 7595183 7595183 C T MCOLN1 Silent p.L457L 0.22 TCGA-EE-A2MS-06 19 7705879 7705881 ACG CA STXBP2 Frame_Shift_Del p.Y140Sfs*70 0.18 TCGA-EE-A2MS-06 19 7805801 7805801 C T CD209 3'UTR 0.50 TCGA-EE-A2MS-06 19 7976345 7976345 C T MAP2K7 Missense_Mutation p.P321S 0.68 deleterious(0.01) possibly_damaging(0.789) TCGA-EE-A2MS-06 19 7997560 7997560 G A TIMM44 Silent p.D313D 0.29 TCGA-EE-A2MS-06 19 7998811 7998811 G A TIMM44 Silent p.L207L 0.22 TCGA-EE-A2MS-06 19 8194188 8194188 C T FBN3 Silent p.R702R 0.23 TCGA-EE-A2MS-06 19 8464857 8464857 C T RAB11B Missense_Mutation p.R51C 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MS-06 19 8486881 8486881 C T MARCH2 Missense_Mutation p.R53C 0.32 deleterious(0.05) possibly_damaging(0.724) TCGA-EE-A2MS-06 19 8660772 8660772 G A ADAMTS10 Silent p.L451L 0.30 TCGA-EE-A2MS-06 19 8665993 8665993 C T ADAMTS10 Missense_Mutation p.R210Q 0.24 tolerated(0.1) benign(0.255) TCGA-EE-A2MS-06 19 868157 868157 G A MED16 Missense_Mutation p.H860Y 0.50 tolerated_low_confidence(0.06) benign(0.152) TCGA-EE-A2MS-06 19 868158 868158 G A MED16 Silent p.H859H 0.47 TCGA-EE-A2MS-06 19 8995964 8995964 G A MUC16 Silent p.S13759S 0.38 TCGA-EE-A2MS-06 19 899633 899633 G A R3HDM4 Silent p.P205P 0.30 TCGA-EE-A2MS-06 19 9048748 9048748 G A MUC16 Silent p.T10961T 0.28 TCGA-EE-A2MS-06 19 9049655 9049655 G A MUC16 Missense_Mutation p.S10659L 0.26 benign(0.097) TCGA-EE-A2MS-06 19 9056574 9056574 G A MUC16 Missense_Mutation p.T10291I 0.29 benign(0.145) TCGA-EE-A2MS-06 19 9064631 9064631 G A MUC16 Silent p.P7605P 0.29 TCGA-EE-A2MS-06 19 9069548 9069548 C T MUC16 Silent p.R5966R 0.37 TCGA-EE-A2MS-06 19 9070500 9070500 G A MUC16 Missense_Mutation p.S5649L 0.23 unknown(0) TCGA-EE-A2MS-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.58 unknown(0) TCGA-EE-A2MS-06 19 9074217 9074217 G A MUC16 Missense_Mutation p.P4410L 0.25 unknown(0) TCGA-EE-A2MS-06 19 9075687 9075687 G A MUC16 Missense_Mutation p.S3920L 0.20 unknown(0) TCGA-EE-A2MS-06 19 9076809 9076809 C T MUC16 Missense_Mutation p.G3546E 0.15 unknown(0) TCGA-EE-A2MS-06 19 9076840 9076840 G A MUC16 Missense_Mutation p.P3536S 0.68 unknown(0) TCGA-EE-A2MS-06 19 9080501 9080501 C T MUC16 Missense_Mutation p.G3177E 0.32 unknown(0) TCGA-EE-A2MS-06 19 9085046 9085046 C T MUC16 Missense_Mutation p.D2257N 0.55 unknown(0) TCGA-EE-A2MS-06 19 9089642 9089642 G A MUC16 Missense_Mutation p.P725S 0.25 unknown(0) TCGA-EE-A2MS-06 19 9204289 9204289 C T OR1M1 Silent p.F123F 0.47 TCGA-EE-A2MS-06 19 9325456 9325456 C T OR7D4 Missense_Mutation p.D20N 0.45 tolerated(0.1) benign(0.022) TCGA-EE-A2MS-06 19 9362720 9362721 - T OR7E24 Frame_Shift_Ins p.C336Lfs*14 0.41 TCGA-EE-A2MS-06 19 9578989 9578989 C T ZNF560 Missense_Mutation p.E212K 0.29 tolerated(0.19) possibly_damaging(0.636) TCGA-EE-A2MS-06 19 9677277 9677277 G A ZNF121 Missense_Mutation p.P171L 0.64 deleterious(0.02) benign(0.162) TCGA-EE-A2MS-06 19 9677278 9677278 G A ZNF121 Missense_Mutation p.P171S 0.64 deleterious(0) benign(0.198) TCGA-EE-A2MS-06 19 971923 971923 C T ARID3A Missense_Mutation p.P547L 0.29 deleterious(0.03) unknown(0) TCGA-EE-A2MS-06 19 9801144 9801144 G A ZNF812 Silent p.S345S 0.62 TCGA-EE-A2MS-06 19 9968153 9968153 C T OLFM2 Silent p.L122L 0.26 TCGA-EE-A2MS-06 1 103352475 103352475 G A COL11A1 Silent p.S1582S 0.30 TCGA-EE-A2MS-06 1 10381874 10381874 C T KIF1B Silent p.L727L 0.31 TCGA-EE-A2MS-06 1 10479520 10479520 C T PGD Missense_Mutation p.P419L 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 1 10718634 10718634 C T CASZ1 Splice_Site p.X447_splice 0.17 TCGA-EE-A2MS-06 1 109395298 109395298 C T AKNAD1 5'UTR 0.35 TCGA-EE-A2MS-06 1 109554153 109554153 A G WDR47 Missense_Mutation p.V179A 0.34 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MS-06 1 109774338 109774338 C T SARS Missense_Mutation p.P226L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 109794877 109794877 C T CELSR2 Missense_Mutation p.P726S 0.31 deleterious(0.04) possibly_damaging(0.859) TCGA-EE-A2MS-06 1 109968936 109968936 G A PSMA5 Missense_Mutation p.S6F 0.39 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MS-06 1 110256073 110256073 C T GSTM5 Intron 0.38 TCGA-EE-A2MS-06 1 110466433 110466433 C T CSF1 Missense_Mutation p.P397L 0.36 tolerated(0.23) benign(0.124) TCGA-EE-A2MS-06 1 110466588 110466588 C T CSF1 Missense_Mutation p.R449W 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 110655204 110655204 G A UBL4B Silent p.K16K 0.33 TCGA-EE-A2MS-06 1 11114874 11114874 G A SRM 3'UTR 0.71 TCGA-EE-A2MS-06 1 1117796 1117796 G A TTLL10 Missense_Mutation p.E296K 0.57 deleterious(0) possibly_damaging(0.895) TCGA-EE-A2MS-06 1 112303708 112303708 C T DDX20 Missense_Mutation p.P308L 0.27 deleterious(0.02) benign(0.01) TCGA-EE-A2MS-06 1 114401651 114401651 G A PTPN22 Silent p.S82S 0.40 TCGA-EE-A2MS-06 1 114448080 114448080 C T DCLRE1B 5'UTR 0.40 TCGA-EE-A2MS-06 1 115222291 115222291 G A AMPD1 Missense_Mutation p.S302F 0.23 deleterious(0.01) possibly_damaging(0.772) TCGA-EE-A2MS-06 1 115828696 115828696 C T NGF Missense_Mutation p.A241T 0.29 deleterious_low_confidence(0.02) benign(0.287) TCGA-EE-A2MS-06 1 116206850 116206850 C T VANGL1 Missense_Mutation p.T258I 0.31 tolerated(0.06) possibly_damaging(0.815) TCGA-EE-A2MS-06 1 11718436 11718436 C T FBXO44 Silent p.F126F 0.31 TCGA-EE-A2MS-06 1 117307122 117307122 C G CD2 Missense_Mutation p.I210M 0.42 tolerated(0.11) benign(0.237) TCGA-EE-A2MS-06 1 117311214 117311214 C T CD2 Missense_Mutation p.R289C 0.39 deleterious(0.04) benign(0.105) TCGA-EE-A2MS-06 1 117487679 117487679 C T PTGFRN Missense_Mutation p.A266V 0.21 tolerated(0.14) benign(0.403) TCGA-EE-A2MS-06 1 117753470 117753470 G A VTCN1 Missense_Mutation p.S3F 0.30 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MS-06 1 12012792 12012792 G A PLOD1 Silent p.R193R 0.53 TCGA-EE-A2MS-06 1 12012793 12012793 G T PLOD1 Splice_Site p.X193_splice 0.53 TCGA-EE-A2MS-06 1 120168512 120168512 G A ZNF697 Missense_Mutation p.P71L 0.29 deleterious_low_confidence(0.01) benign(0.009) TCGA-EE-A2MS-06 1 120345526 120345526 G A REG4 Intron 0.39 TCGA-EE-A2MS-06 1 12198328 12198328 G A TNFRSF8 Missense_Mutation p.E460K 0.35 tolerated(0.29) benign(0.055) TCGA-EE-A2MS-06 1 1231242 1231242 G A ACAP3 Silent p.L527L 0.59 TCGA-EE-A2MS-06 1 1231243 1231243 G A ACAP3 Silent p.A526A 0.59 TCGA-EE-A2MS-06 1 12336956 12336956 C T VPS13D Missense_Mutation p.S1104F 0.26 benign(0.277) TCGA-EE-A2MS-06 1 12445353 12445353 C T VPS13D Missense_Mutation p.S3802L 0.30 benign(0.058) TCGA-EE-A2MS-06 1 12704665 12704665 C T AADACL4 Missense_Mutation p.P34S 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MS-06 1 1289285 1289285 C T MXRA8 Missense_Mutation p.E416K 0.55 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MS-06 1 1289286 1289286 C T MXRA8 Silent p.K415K 0.55 TCGA-EE-A2MS-06 1 12907965 12907965 C T HNRNPCL1 Missense_Mutation p.E60K 0.13 deleterious(0) benign(0.292) TCGA-EE-A2MS-06 1 12921091 12921091 C T PRAMEF2 Silent p.P294P 0.26 TCGA-EE-A2MS-06 1 14108590 14108590 C T PRDM2 Missense_Mutation p.L1434F 0.40 unknown(0) TCGA-EE-A2MS-06 1 1430980 1430980 C T ATAD3B Missense_Mutation p.P577L 0.69 tolerated(0.14) benign(0.015) TCGA-EE-A2MS-06 1 145115850 145115850 C T SEC22B RNA 0.07 TCGA-EE-A2MS-06 1 145299842 145299842 C T NBPF10 Silent p.P297P 0.13 TCGA-EE-A2MS-06 1 145456714 145456714 A T POLR3GL Missense_Mutation p.Y194N 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 1 145456715 145456715 A C POLR3GL Missense_Mutation p.D193E 0.28 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A2MS-06 1 145555703 145555703 G A ANKRD35 Nonsense_Mutation p.W17* 0.09 TCGA-EE-A2MS-06 1 145578202 145578202 G A PIAS3 Missense_Mutation p.M55I 0.67 tolerated(0.48) benign(0.324) TCGA-EE-A2MS-06 1 149755750 149755750 G A FCGR1A Missense_Mutation p.E82K 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MS-06 1 150054811 150054811 G A VPS45 Silent p.E316E 0.19 TCGA-EE-A2MS-06 1 150259285 150259285 C T C1orf51 Silent p.A359A 0.19 TCGA-EE-A2MS-06 1 150720314 150720314 C T CTSS Missense_Mutation p.G279S 0.64 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MS-06 1 151062929 151062929 C T GABPB2 Silent p.S52S 0.70 TCGA-EE-A2MS-06 1 151314837 151314837 G A RFX5 Missense_Mutation p.P559L 0.17 tolerated_low_confidence(0.26) benign(0.025) TCGA-EE-A2MS-06 1 151498197 151498197 C T CGN Missense_Mutation p.S565L 0.60 tolerated(0.09) benign(0.407) TCGA-EE-A2MS-06 1 151749052 151749052 G A TDRKH Missense_Mutation p.H303Y 0.59 tolerated(0.05) benign(0.098) TCGA-EE-A2MS-06 1 151751458 151751458 C T TDRKH Missense_Mutation p.E196K 0.74 deleterious(0.03) probably_damaging(0.962) TCGA-EE-A2MS-06 1 151992775 151992775 G A NBPF18P RNA 0.11 TCGA-EE-A2MS-06 1 152058541 152058541 G A TCHHL1 Silent p.F539F 0.21 TCGA-EE-A2MS-06 1 152191892 152191892 C T HRNR Missense_Mutation p.R738K 0.20 unknown(0) TCGA-EE-A2MS-06 1 152282024 152282024 C T FLG Missense_Mutation p.G1780R 0.63 probably_damaging(0.953) TCGA-EE-A2MS-06 1 152287816 152287816 C T FLG Silent p.K39K 0.24 TCGA-EE-A2MS-06 1 152323862 152323862 C T FLG2 Missense_Mutation p.G2134R 0.21 benign(0.428) TCGA-EE-A2MS-06 1 152382958 152382958 C T CRNN Silent p.R200R 0.44 TCGA-EE-A2MS-06 1 153177437 153177437 C T LELP1 Missense_Mutation p.S85F 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A2MS-06 1 153270486 153270486 G A PGLYRP3 Silent p.S324S 0.67 TCGA-EE-A2MS-06 1 153303134 153303134 C T PGLYRP4 3'UTR 0.38 TCGA-EE-A2MS-06 1 153346287 153346287 G A S100A12 3'UTR 0.23 TCGA-EE-A2MS-06 1 153346438 153346438 G A S100A12 Silent p.I48I 0.44 TCGA-EE-A2MS-06 1 153409565 153409565 C T S100A7L2 Missense_Mutation p.G103E 0.21 deleterious(0.05) probably_damaging(0.988) TCGA-EE-A2MS-06 1 153614878 153614878 C T CHTOP Silent p.L126L 0.23 TCGA-EE-A2MS-06 1 15370527 15370527 C T KAZN Silent p.L200L 0.61 TCGA-EE-A2MS-06 1 153906740 153906740 G A DENND4B Nonsense_Mutation p.Q938* 0.62 TCGA-EE-A2MS-06 1 153924553 153924553 G A CRTC2 Missense_Mutation p.T313I 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 1 154144628 154144628 G A TPM3 Intron 0.22 TCGA-EE-A2MS-06 1 154516548 154516548 C T TDRD10 Missense_Mutation p.P205S 0.36 tolerated(0.05) possibly_damaging(0.871) TCGA-EE-A2MS-06 1 154705554 154705554 G A KCNN3 Silent p.F505F 0.63 TCGA-EE-A2MS-06 1 154920149 154920149 G A PBXIP1 Missense_Mutation p.P236L 0.19 tolerated(0.14) benign(0.037) TCGA-EE-A2MS-06 1 154956119 154956119 C A FLAD1 5'UTR 0.15 TCGA-EE-A2MS-06 1 154965400 154965400 G T FLAD1 Nonsense_Mutation p.E551* 0.26 TCGA-EE-A2MS-06 1 155449894 155449894 C T ASH1L Missense_Mutation p.E923K 0.23 tolerated_low_confidence(0.13) possibly_damaging(0.7) TCGA-EE-A2MS-06 1 155451426 155451426 G T ASH1L Missense_Mutation p.P412H 0.17 deleterious_low_confidence(0) benign(0.336) TCGA-EE-A2MS-06 1 156013896 156013896 G A UBQLN4 Missense_Mutation p.S340F 0.18 deleterious(0) possibly_damaging(0.758) TCGA-EE-A2MS-06 1 156106056 156106056 C T LMNA Silent p.S403S 0.53 TCGA-EE-A2MS-06 1 156142688 156142688 G A SEMA4A Silent p.V402V 0.49 TCGA-EE-A2MS-06 1 156347844 156347844 G A RHBG Silent p.K146K 0.31 TCGA-EE-A2MS-06 1 156554673 156554673 C T TTC24 Missense_Mutation p.S419L 0.94 tolerated(0.53) benign(0.006) TCGA-EE-A2MS-06 1 156639569 156639569 C A NES Missense_Mutation p.D1471Y 0.26 deleterious(0) possibly_damaging(0.784) TCGA-EE-A2MS-06 1 156640912 156640912 C T NES Missense_Mutation p.R1023K 0.72 tolerated(0.09) benign(0.03) TCGA-EE-A2MS-06 1 156848978 156848978 C T NTRK1 Silent p.L624L 0.76 TCGA-EE-A2MS-06 1 156925567 156925567 C T ARHGEF11 Missense_Mutation p.D566N 0.41 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A2MS-06 1 157103994 157103994 G A ETV3 Missense_Mutation p.H104Y 0.14 deleterious(0.03) possibly_damaging(0.639) TCGA-EE-A2MS-06 1 15752508 15752508 C T EFHD2 Silent p.F150F 0.31 TCGA-EE-A2MS-06 1 157556094 157556094 C T FCRL4 Silent p.G333G 0.57 TCGA-EE-A2MS-06 1 157559215 157559215 G A FCRL4 Missense_Mutation p.P29L 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 157811519 157811519 G A CD5L 5'UTR 0.17 TCGA-EE-A2MS-06 1 158063217 158063217 C T KIRREL Silent p.L520L 0.18 TCGA-EE-A2MS-06 1 158154038 158154038 G A CD1D 3'UTR 0.22 TCGA-EE-A2MS-06 1 158325175 158325175 C T CD1E Silent p.F147F 0.22 TCGA-EE-A2MS-06 1 158368976 158368976 G A OR10T2 Missense_Mutation p.S94F 0.25 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A2MS-06 1 158390395 158390395 G A OR10K2 Nonsense_Mutation p.Q88* 0.42 TCGA-EE-A2MS-06 1 158517128 158517128 G A OR6Y1 Silent p.F256F 0.70 TCGA-EE-A2MS-06 1 158549150 158549150 G A OR10X1 Silent p.F180F 0.12 TCGA-EE-A2MS-06 1 158584062 158584062 C T SPTA1 Missense_Mutation p.E2275K 0.71 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 1 158590148 158590148 C T SPTA1 Missense_Mutation p.E2077K 0.15 deleterious(0) possibly_damaging(0.489) TCGA-EE-A2MS-06 1 158590154 158590154 G A SPTA1 Silent p.L2075L 0.42 TCGA-EE-A2MS-06 1 158596650 158596650 C T SPTA1 Missense_Mutation p.D1938N 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 158632567 158632567 G A SPTA1 Silent p.L797L 0.70 TCGA-EE-A2MS-06 1 158670177 158670177 C T OR6K2 Missense_Mutation p.R89K 0.74 tolerated(1) benign(0.002) TCGA-EE-A2MS-06 1 158725577 158725577 G A OR6K6 Missense_Mutation p.M324I 0.21 tolerated(0.71) benign(0.008) TCGA-EE-A2MS-06 1 15874796 15874796 C T DNAJC16 Missense_Mutation p.S299L 0.40 tolerated(0.19) benign(0.002) TCGA-EE-A2MS-06 1 159277645 159277645 C T FCER1A Missense_Mutation p.L233F 0.21 tolerated(0.18) benign(0.105) TCGA-EE-A2MS-06 1 159799844 159799844 C T SLAMF8 Silent p.L77L 0.18 TCGA-EE-A2MS-06 1 160111190 160111190 G A ATP1A2 3'UTR 0.55 TCGA-EE-A2MS-06 1 160589632 160589632 C T SLAMF1 Silent p.T266T 0.17 TCGA-EE-A2MS-06 1 16069344 16069344 C T TMEM82 Missense_Mutation p.L35F 0.50 tolerated(0.08) benign(0.341) TCGA-EE-A2MS-06 1 16095111 16095111 A T FBLIM1 Missense_Mutation p.K176I 0.48 tolerated(0.06) benign(0.148) TCGA-EE-A2MS-06 1 161022449 161022449 G A ARHGAP30 Missense_Mutation p.P268L 0.14 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A2MS-06 1 161024435 161024435 C T ARHGAP30 Missense_Mutation p.E136K 0.20 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A2MS-06 1 161043012 161043012 C T PVRL4 Intron 0.71 TCGA-EE-A2MS-06 1 161047418 161047418 C T PVRL4 Silent p.T185T 0.61 TCGA-EE-A2MS-06 1 161049730 161049730 G A PVRL4 Missense_Mutation p.P30L 0.37 tolerated(0.8) benign(0) TCGA-EE-A2MS-06 1 161166022 161166022 C T ADAMTS4 Silent p.R343R 0.16 TCGA-EE-A2MS-06 1 161284186 161284186 G A SDHC 5'UTR 0.55 TCGA-EE-A2MS-06 1 161594256 161594256 G A FCGR3B 3'UTR 0.34 TCGA-EE-A2MS-06 1 161761236 161761236 C T ATF6 Silent p.P131P 0.22 TCGA-EE-A2MS-06 1 161953801 161953801 C T OLFML2B Silent p.E639E 0.26 TCGA-EE-A2MS-06 1 161970019 161970019 G A OLFML2B Missense_Mutation p.P278L 0.69 tolerated(0.43) benign(0.005) TCGA-EE-A2MS-06 1 161970020 161970020 G A OLFML2B Missense_Mutation p.P278S 0.71 tolerated(0.38) benign(0.044) TCGA-EE-A2MS-06 1 16256224 16256224 C T SPEN Silent p.I1163I 0.46 TCGA-EE-A2MS-06 1 162746107 162746107 C T DDR2 Nonsense_Mutation p.Q744* 0.19 TCGA-EE-A2MS-06 1 163042204 163042204 C T RGS4 Missense_Mutation p.R119W 0.20 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MS-06 1 16372084 16372084 C T CLCNKB Silent p.F44F 0.23 TCGA-EE-A2MS-06 1 165218703 165218703 C T LMX1A Silent p.G146G 0.59 TCGA-EE-A2MS-06 1 165322368 165322368 C T LMX1A Missense_Mutation p.E70K 0.71 tolerated(0.63) benign(0.155) TCGA-EE-A2MS-06 1 166896415 166896415 G A ILDR2 Missense_Mutation p.R295C 0.24 deleterious(0) benign(0.075) TCGA-EE-A2MS-06 1 166973452 166973452 G A MAEL Missense_Mutation p.E187K 0.30 deleterious(0.03) benign(0.283) TCGA-EE-A2MS-06 1 16736305 16736305 G A SPATA21 Silent p.S126S 0.44 TCGA-EE-A2MS-06 1 168044630 168044630 C T DCAF6 Missense_Mutation p.S938L 0.52 deleterious_low_confidence(0.04) probably_damaging(0.971) TCGA-EE-A2MS-06 1 169672473 169672473 C T SELL Missense_Mutation p.G305E 0.71 deleterious(0.02) benign(0.35) TCGA-EE-A2MS-06 1 170967563 170967563 G A MROH9 Intron 0.37 TCGA-EE-A2MS-06 1 171079971 171079971 G A FMO3 Silent p.V220V 0.27 TCGA-EE-A2MS-06 1 171162577 171162577 C T FMO2 Missense_Mutation p.P79L 0.25 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 1 172002338 172002338 C T DNM3 Missense_Mutation p.S261F 0.21 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 1 172100375 172100375 G A DNM3 Missense_Mutation p.G536R 0.10 tolerated(0.07) benign(0.05) TCGA-EE-A2MS-06 1 172411146 172411146 G A PIGC Missense_Mutation p.A206V 0.15 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 1 172558334 172558334 T C SUCO Missense_Mutation p.V698A 0.21 tolerated(0.32) benign(0.003) TCGA-EE-A2MS-06 1 173517566 173517566 T C SLC9C2 Missense_Mutation p.T475A 0.77 tolerated(0.12) benign(0.214) TCGA-EE-A2MS-06 1 175046593 175046593 C T TNN Silent p.L13L 0.25 TCGA-EE-A2MS-06 1 175306693 175306693 C T TNR Missense_Mutation p.D1169N 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 175324761 175324761 G A TNR Missense_Mutation p.P1043S 0.24 tolerated(0.18) benign(0.011) TCGA-EE-A2MS-06 1 175958589 175958589 G A RFWD2 Missense_Mutation p.R586C 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 176525627 176525627 C T PAPPA2 Nonsense_Mutation p.R57* 0.72 TCGA-EE-A2MS-06 1 176668309 176668309 G A PAPPA2 Missense_Mutation p.M940I 0.20 tolerated(0.27) benign(0.118) TCGA-EE-A2MS-06 1 176905363 176905363 C T ASTN1 Intron 0.39 TCGA-EE-A2MS-06 1 176905451 176905451 G A ASTN1 Silent p.V811V 0.26 TCGA-EE-A2MS-06 1 176927515 176927515 C T ASTN1 Missense_Mutation p.D568N 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 1 177937101 177937101 G A SEC16B Missense_Mutation p.P6S 0.22 tolerated(0.08) possibly_damaging(0.55) TCGA-EE-A2MS-06 1 180062207 180062207 C T CEP350 Missense_Mutation p.H2323Y 0.50 benign(0.169) TCGA-EE-A2MS-06 1 180151443 180151443 C T QSOX1 Silent p.S247S 0.65 TCGA-EE-A2MS-06 1 180163365 180163365 C T QSOX1 Missense_Mutation p.L436F 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 1 181548280 181548280 T C CACNA1E Missense_Mutation p.F230S 0.64 deleterious(0) possibly_damaging(0.637) TCGA-EE-A2MS-06 1 181620538 181620538 C T CACNA1E Missense_Mutation p.S339F 0.19 deleterious(0) benign(0.075) TCGA-EE-A2MS-06 1 181745324 181745324 G A CACNA1E Missense_Mutation p.E1743K 0.17 deleterious(0) benign(0.305) TCGA-EE-A2MS-06 1 181759674 181759674 C T CACNA1E Silent p.F1960F 0.12 TCGA-EE-A2MS-06 1 182544605 182544605 G A RNASEL Silent p.F716F 0.21 TCGA-EE-A2MS-06 1 182642046 182642046 G A RGS8 5'UTR 0.24 TCGA-EE-A2MS-06 1 18554492 18554492 C T IGSF21 Silent p.I57I 0.40 TCGA-EE-A2MS-06 1 186269233 186269233 C T PRG4 Silent p.S29S 0.64 TCGA-EE-A2MS-06 1 186281394 186281394 G A PRG4 Missense_Mutation p.G1294E 0.24 unknown(0) TCGA-EE-A2MS-06 1 190068135 190068135 G A BRINP3 Silent p.F438F 0.18 TCGA-EE-A2MS-06 1 190129848 190129848 G A BRINP3 Silent p.S378S 0.27 TCGA-EE-A2MS-06 1 19183978 19183978 C T TAS1R2 Silent p.P110P 0.41 TCGA-EE-A2MS-06 1 193018906 193018906 G A UCHL5 Silent p.S72S 0.14 TCGA-EE-A2MS-06 1 19597390 19597390 G A AKR7L 5'UTR 0.31 TCGA-EE-A2MS-06 1 196227610 196227610 G A KCNT2 Silent p.I975I 0.14 TCGA-EE-A2MS-06 1 196300392 196300392 C T KCNT2 Splice_Site p.X666_splice 0.21 TCGA-EE-A2MS-06 1 196309666 196309666 C T KCNT2 Missense_Mutation p.D530N 0.61 deleterious(0.05) benign(0.201) TCGA-EE-A2MS-06 1 196398838 196398838 A G KCNT2 Missense_Mutation p.F230L 0.18 tolerated(0.26) benign(0.004) TCGA-EE-A2MS-06 1 196694310 196694310 C T CFH Nonsense_Mutation p.Q586* 0.57 TCGA-EE-A2MS-06 1 196762501 196762501 G A CFHR3 Missense_Mutation p.G284E 0.21 tolerated(0.28) possibly_damaging(0.792) TCGA-EE-A2MS-06 1 197009744 197009744 A G F13B Silent p.T620T 0.65 TCGA-EE-A2MS-06 1 197397075 197397075 C T CRB1 Missense_Mutation p.L874F 0.41 tolerated(0.61) benign(0.013) TCGA-EE-A2MS-06 1 200017507 200017507 C T NR5A2 Missense_Mutation p.P224L 0.63 deleterious(0.01) benign(0.004) TCGA-EE-A2MS-06 1 20005187 20005187 G A HTR6 Nonsense_Mutation p.W281* 0.55 TCGA-EE-A2MS-06 1 20005188 20005188 G A HTR6 Nonsense_Mutation p.W281* 0.58 TCGA-EE-A2MS-06 1 200090020 200090020 C T NR5A2 Missense_Mutation p.R439C 0.14 deleterious(0.01) possibly_damaging(0.591) TCGA-EE-A2MS-06 1 200811132 200811132 T C CAMSAP2 Missense_Mutation p.L313S 0.28 deleterious(0) possibly_damaging(0.862) TCGA-EE-A2MS-06 1 201012516 201012516 G A CACNA1S Silent p.F1647F 0.75 TCGA-EE-A2MS-06 1 201016755 201016755 C T CACNA1S Splice_Site p.X1481_splice 0.20 TCGA-EE-A2MS-06 1 201039492 201039492 G A CACNA1S Silent p.P756P 0.17 TCGA-EE-A2MS-06 1 201186446 201186446 C T IGFN1 Silent p.I3209I 0.22 TCGA-EE-A2MS-06 1 201191883 201191883 C T IGFN1 Silent p.L3406L 0.44 TCGA-EE-A2MS-06 1 201354881 201354881 C T LAD1 Missense_Mutation p.R360Q 0.59 tolerated(0.21) benign(0.257) TCGA-EE-A2MS-06 1 201356245 201356245 C T LAD1 Missense_Mutation p.D82N 0.65 tolerated(0.1) benign(0.024) TCGA-EE-A2MS-06 1 20141231 20141231 C T RNF186 Missense_Mutation p.G122R 0.42 tolerated(0.2) benign(0.003) TCGA-EE-A2MS-06 1 202128574 202128574 G A PTPN7 Missense_Mutation p.S91L 0.48 deleterious_low_confidence(0.02) benign(0.002) TCGA-EE-A2MS-06 1 202566020 202566020 G A SYT2 Silent p.F375F 0.16 TCGA-EE-A2MS-06 1 202911193 202911193 C T ADIPOR1 Missense_Mutation p.R320Q 0.20 deleterious(0.04) possibly_damaging(0.577) TCGA-EE-A2MS-06 1 203028942 203028942 C T PPFIA4 Missense_Mutation p.A343V 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 1 203186116 203186116 C T CHIT1 Silent p.R434R 0.60 TCGA-EE-A2MS-06 1 203316739 203316739 C T FMOD Silent p.R220R 0.19 TCGA-EE-A2MS-06 1 203316868 203316868 G A FMOD Silent p.S177S 0.20 TCGA-EE-A2MS-06 1 203667392 203667392 C T ATP2B4 Missense_Mutation p.L101F 0.23 tolerated(0.17) probably_damaging(1) TCGA-EE-A2MS-06 1 203798671 203798671 C T ZC3H11A Missense_Mutation p.P131S 0.17 deleterious(0.04) possibly_damaging(0.779) TCGA-EE-A2MS-06 1 204587761 204587761 C T LRRN2 Missense_Mutation p.E454K 0.69 deleterious(0.01) benign(0.258) TCGA-EE-A2MS-06 1 204588311 204588311 C T LRRN2 Silent p.K270K 0.60 TCGA-EE-A2MS-06 1 204923977 204923977 G A NFASC Missense_Mutation p.E145K 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 1 205632453 205632453 G A SLC45A3 Missense_Mutation p.H156Y 0.10 deleterious(0.03) benign(0.153) TCGA-EE-A2MS-06 1 205897137 205897137 C T SLC26A9 Missense_Mutation p.D332N 0.67 tolerated(0.19) benign(0.158) TCGA-EE-A2MS-06 1 206325396 206325396 G A CTSE Silent p.Q207Q 0.67 TCGA-EE-A2MS-06 1 206634828 206634828 C T SRGAP2 3'UTR 0.23 TCGA-EE-A2MS-06 1 207112646 207112646 G A PIGR Missense_Mutation p.S69F 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 1 207262819 207262819 C T C4BPB 5'UTR 0.68 TCGA-EE-A2MS-06 1 207643161 207643161 G A CR2 Silent p.V313V 0.15 TCGA-EE-A2MS-06 1 207644363 207644363 G A CR2 Missense_Mutation p.G475E 0.42 tolerated(0.22) benign(0.067) TCGA-EE-A2MS-06 1 207679396 207679396 C T CR1 Missense_Mutation p.S90L 0.69 tolerated(0.37) benign(0.102) TCGA-EE-A2MS-06 1 20931499 20931499 G A CDA Missense_Mutation p.G78E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 209605484 209605484 C T MIR205HG Intron 0.15 TCGA-EE-A2MS-06 1 209788715 209788715 G A LAMB3 Silent p.I1140I 0.59 TCGA-EE-A2MS-06 1 209933343 209933343 C T TRAF3IP3 5'UTR 0.16 TCGA-EE-A2MS-06 1 209968732 209968732 C T IRF6 Silent p.K137K 0.67 TCGA-EE-A2MS-06 1 21009190 21009190 C T KIF17 Missense_Mutation p.E807K 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2MS-06 1 2103820 2103820 G A PRKCZ Silent p.E426E 0.44 TCGA-EE-A2MS-06 1 212870361 212870361 C T BATF3 Missense_Mutation p.R46Q 0.70 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MS-06 1 212988386 212988386 C T TATDN3 Missense_Mutation p.S245L 0.25 deleterious(0) benign(0.238) TCGA-EE-A2MS-06 1 214170398 214170398 C T PROX1 Missense_Mutation p.R174W 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 214794131 214794131 C T CENPF Missense_Mutation p.P236L 0.46 probably_damaging(0.999) TCGA-EE-A2MS-06 1 214817969 214817969 C T CENPF Missense_Mutation p.P1686S 0.17 possibly_damaging(0.787) TCGA-EE-A2MS-06 1 21546524 21546524 G A ECE1 Missense_Mutation p.S746F 0.38 tolerated(0.21) probably_damaging(1) TCGA-EE-A2MS-06 1 21560127 21560127 C T ECE1 Missense_Mutation p.E532K 0.43 deleterious(0.02) benign(0.181) TCGA-EE-A2MS-06 1 215847641 215847641 G A USH2A Missense_Mutation p.P4538S 0.41 probably_damaging(0.982) TCGA-EE-A2MS-06 1 21894741 21894741 G A ALPL Splice_Site p.X264_splice 0.54 TCGA-EE-A2MS-06 1 21925999 21925999 C T RAP1GAP Silent p.E652E 0.43 TCGA-EE-A2MS-06 1 21926060 21926060 G A RAP1GAP Missense_Mutation p.S632F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 1 220192380 220192380 C T EPRS Missense_Mutation p.R464K 0.19 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A2MS-06 1 220826519 220826519 C T MARK1 Missense_Mutation p.P605S 0.18 tolerated(0.3) benign(0.049) TCGA-EE-A2MS-06 1 220936284 220936284 C A MARC2 Silent p.I214I 0.24 TCGA-EE-A2MS-06 1 221054565 221054565 C T HLX Missense_Mutation p.P208S 0.51 deleterious(0.04) benign(0.05) TCGA-EE-A2MS-06 1 221054566 221054566 C T HLX Missense_Mutation p.P208L 0.52 deleterious(0) benign(0.155) TCGA-EE-A2MS-06 1 222705434 222705434 C T HHIPL2 Missense_Mutation p.E533K 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 222717322 222717322 C T HHIPL2 Silent p.K177K 0.68 TCGA-EE-A2MS-06 1 227843247 227843247 C T ZNF678 Silent p.P432P 0.70 TCGA-EE-A2MS-06 1 227923013 227923013 C T JMJD4 Missense_Mutation p.E34K 0.62 tolerated_low_confidence(0.29) benign(0.299) TCGA-EE-A2MS-06 1 227968364 227968364 G A SNAP47 Missense_Mutation p.R462K 0.21 tolerated(1) benign(0.002) TCGA-EE-A2MS-06 1 228505743 228505743 G A OBSCN Missense_Mutation p.G5624E 0.52 benign(0.24) TCGA-EE-A2MS-06 1 228556502 228556502 C T OBSCN Missense_Mutation p.P7573L 0.18 probably_damaging(0.996) TCGA-EE-A2MS-06 1 228612796 228612796 C T HIST3H3 Silent p.Q77Q 0.27 TCGA-EE-A2MS-06 1 228879481 228879481 C T RHOU Silent p.F257F 0.20 TCGA-EE-A2MS-06 1 229750146 229750146 G A TAF5L Silent p.P28P 0.19 TCGA-EE-A2MS-06 1 230810853 230810853 C T COG2 Missense_Mutation p.P337S 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 1 232162271 232162271 A C DISC1 Missense_Mutation p.I800L 0.75 deleterious(0.05) benign(0.273) TCGA-EE-A2MS-06 1 232943896 232943896 C T MAP10 Missense_Mutation p.P1043S 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 233161005 233161005 C T PCNXL2 Missense_Mutation p.E1498K 0.17 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2MS-06 1 233270786 233270786 G A PCNXL2 Silent p.F1270F 0.53 TCGA-EE-A2MS-06 1 233507873 233507873 C T MLK4 Missense_Mutation p.P548S 0.15 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 1 235594039 235594039 C T TBCE Missense_Mutation p.P194S 0.44 tolerated(0.19) benign(0.253) TCGA-EE-A2MS-06 1 235600750 235600750 C T TBCE Silent p.I359I 0.20 TCGA-EE-A2MS-06 1 235866166 235866166 G A LYST Missense_Mutation p.H3419Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 1 235866167 235866167 G A LYST Silent p.A3418A 0.22 TCGA-EE-A2MS-06 1 235973358 235973358 G A LYST Missense_Mutation p.P254S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MS-06 1 236700859 236700859 T A LGALS8 Silent p.R36R 0.16 TCGA-EE-A2MS-06 1 236881274 236881274 T C ACTN2 Splice_Site p.X81_splice 0.62 TCGA-EE-A2MS-06 1 236925806 236925806 C T ACTN2 Nonsense_Mutation p.Q858* 0.51 TCGA-EE-A2MS-06 1 237054611 237054611 C T MTR Silent p.F1062F 0.68 TCGA-EE-A2MS-06 1 237796890 237796890 C T RYR2 Missense_Mutation p.P2190S 0.23 probably_damaging(0.951) TCGA-EE-A2MS-06 1 237995900 237995900 C T RYR2 Missense_Mutation p.P4953S 0.26 possibly_damaging(0.857) TCGA-EE-A2MS-06 1 238049117 238049117 G A ZP4 Silent p.L303L 0.18 TCGA-EE-A2MS-06 1 23847473 23847473 G A E2F2 Silent p.A223A 0.44 TCGA-EE-A2MS-06 1 240071103 240071103 G A CHRM3 Missense_Mutation p.G118R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 240286552 240286552 C T FMN2 Silent p.S563S 0.49 TCGA-EE-A2MS-06 1 240371380 240371380 C T FMN2 Missense_Mutation p.P1090S 0.35 unknown(0) TCGA-EE-A2MS-06 1 240975259 240975259 G A RGS7 Silent p.F347F 0.23 TCGA-EE-A2MS-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.62 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 1 242383300 242383300 G A PLD5 Missense_Mutation p.S242F 0.38 deleterious(0) probably_damaging(0.964) TCGA-EE-A2MS-06 1 243333023 243333023 C A CEP170 Missense_Mutation p.V584F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 1 24387573 24387573 C T MYOM3 Splice_Site p.X1324_splice 0.32 TCGA-EE-A2MS-06 1 24406641 24406641 G A MYOM3 Silent p.S817S 0.39 TCGA-EE-A2MS-06 1 24685019 24685019 C T STPG1 3'UTR 0.29 TCGA-EE-A2MS-06 1 247263852 247263852 G A ZNF669 Missense_Mutation p.L407F 0.67 tolerated(0.62) benign(0.169) TCGA-EE-A2MS-06 1 24727916 24727916 G A STPG1 5'UTR 0.31 TCGA-EE-A2MS-06 1 247587382 247587382 G A NLRP3 Missense_Mutation p.D213N 0.25 deleterious(0.03) benign(0.161) TCGA-EE-A2MS-06 1 247737445 247737445 G A GCSAML Missense_Mutation p.E57K 0.25 deleterious(0.01) benign(0.139) TCGA-EE-A2MS-06 1 247737590 247737590 G A GCSAML Missense_Mutation p.R105K 0.24 tolerated(0.49) benign(0.073) TCGA-EE-A2MS-06 1 247752288 247752288 C T OR2G2 Silent p.F209F 0.58 TCGA-EE-A2MS-06 1 247769401 247769401 C T OR2G3 Missense_Mutation p.H172Y 0.20 tolerated(0.11) possibly_damaging(0.718) TCGA-EE-A2MS-06 1 247835746 247835746 C T OR13G1 Missense_Mutation p.D200N 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A2MS-06 1 247875172 247875172 C T OR6F1 Missense_Mutation p.E296K 0.22 tolerated(0.13) benign(0.03) TCGA-EE-A2MS-06 1 247875959 247875959 C T OR6F1 Silent p.V33V 0.42 TCGA-EE-A2MS-06 1 247921397 247921397 G A OR1C1 Silent p.F104F 0.47 TCGA-EE-A2MS-06 1 247978180 247978180 G A OR14A16 Silent p.P284P 0.24 TCGA-EE-A2MS-06 1 247978955 247978955 G A OR14A16 Missense_Mutation p.S26L 0.22 tolerated(0.53) benign(0.174) TCGA-EE-A2MS-06 1 248005013 248005013 G A OR11L1 Silent p.F62F 0.23 TCGA-EE-A2MS-06 1 248039313 248039313 G A TRIM58 Missense_Mutation p.R328Q 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 248112235 248112235 T C OR2L8 Missense_Mutation p.F26L 0.61 tolerated(1) benign(0.001) TCGA-EE-A2MS-06 1 248129222 248129222 C T OR2AK2 Missense_Mutation p.P197S 0.19 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A2MS-06 1 248201930 248201930 C T OR2L2 Missense_Mutation p.R121C 0.23 deleterious(0.01) benign(0.12) TCGA-EE-A2MS-06 1 248366471 248366471 C T OR2M3 Silent p.I34I 0.19 TCGA-EE-A2MS-06 1 248366472 248366472 T A OR2M3 Missense_Mutation p.F35I 0.20 deleterious(0) possibly_damaging(0.604) TCGA-EE-A2MS-06 1 248402688 248402688 C T OR2M4 Missense_Mutation p.S153F 0.67 tolerated(0.23) benign(0.049) TCGA-EE-A2MS-06 1 248402698 248402698 G A OR2M4 Silent p.G156G 0.23 TCGA-EE-A2MS-06 1 248487180 248487180 C T OR2M7 Missense_Mutation p.G231R 0.19 tolerated(0.27) benign(0.049) TCGA-EE-A2MS-06 1 248551537 248551537 C T OR2T6 Missense_Mutation p.P210S 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 1 248569430 248569430 C T OR2T1 Silent p.I45I 0.17 TCGA-EE-A2MS-06 1 248616175 248616175 G A OR2T2 Missense_Mutation p.G26E 0.10 tolerated(0.35) benign(0.007) TCGA-EE-A2MS-06 1 248685694 248685694 C T OR2G6 Silent p.I249I 0.17 TCGA-EE-A2MS-06 1 248685814 248685814 C T OR2G6 Silent p.I289I 0.59 TCGA-EE-A2MS-06 1 248737510 248737510 G A OR2T34 Silent p.F183F 0.23 TCGA-EE-A2MS-06 1 248737528 248737528 C T OR2T34 Silent p.R177R 0.57 TCGA-EE-A2MS-06 1 249106208 249106208 G A SH3BP5L Missense_Mutation p.S358L 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.473) TCGA-EE-A2MS-06 1 25824876 25824876 C T TMEM57 Silent p.P638P 0.45 TCGA-EE-A2MS-06 1 26393949 26393949 G A TRIM63 Missense_Mutation p.P13S 0.23 tolerated(0.74) benign(0.242) TCGA-EE-A2MS-06 1 26508985 26508985 T A CNKSR1 Silent p.A178A 0.37 TCGA-EE-A2MS-06 1 26517266 26517266 C T CATSPER4 Missense_Mutation p.H50Y 0.40 tolerated(0.17) benign(0.004) TCGA-EE-A2MS-06 1 26752889 26752889 C T LIN28A Silent p.Y190Y 0.39 TCGA-EE-A2MS-06 1 26877901 26877901 C T RPS6KA1 Silent p.V116V 0.37 TCGA-EE-A2MS-06 1 27272685 27272685 C T NUDC 3'UTR 0.34 TCGA-EE-A2MS-06 1 27677430 27677430 C T SYTL1 Missense_Mutation p.P384L 0.41 deleterious(0.02) benign(0.197) TCGA-EE-A2MS-06 1 27706630 27706630 G A CD164L2 Silent p.I143I 0.37 TCGA-EE-A2MS-06 1 28861846 28861846 C T RCC1 Silent p.G236G 0.40 TCGA-EE-A2MS-06 1 32086542 32086542 G A HCRTR1 Silent p.R159R 0.37 TCGA-EE-A2MS-06 1 32280373 32280373 C T SPOCD1 Missense_Mutation p.E188K 0.35 tolerated(0.2) benign(0.008) TCGA-EE-A2MS-06 1 32495997 32495997 C T KHDRBS1 Silent p.L161L 0.39 TCGA-EE-A2MS-06 1 32833963 32833963 G A BSDC1 Intron 0.63 TCGA-EE-A2MS-06 1 3319459 3319459 T A PRDM16 Missense_Mutation p.Y261N 0.78 tolerated(0.26) benign(0.14) TCGA-EE-A2MS-06 1 33747277 33747277 C T ZNF362 Missense_Mutation p.P258L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 1 34066529 34066529 G A CSMD2 Silent p.N2266N 0.33 TCGA-EE-A2MS-06 1 34112365 34112365 C T CSMD2 Missense_Mutation p.G1513R 0.55 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 1 34209167 34209167 G A CSMD2 Silent p.V589V 0.36 TCGA-EE-A2MS-06 1 34383840 34383840 G A CSMD2 Missense_Mutation p.P219S 0.29 deleterious(0.01) possibly_damaging(0.491) TCGA-EE-A2MS-06 1 34663234 34663234 C T C1orf94 Silent p.F243F 0.39 TCGA-EE-A2MS-06 1 34677895 34677895 C T C1orf94 Nonsense_Mutation p.Q537* 0.25 TCGA-EE-A2MS-06 1 34677979 34677979 C T C1orf94 Missense_Mutation p.P565S 0.28 deleterious(0.01) possibly_damaging(0.56) TCGA-EE-A2MS-06 1 35370093 35370093 C T DLGAP3 Missense_Mutation p.D298N 0.34 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 1 35370833 35370833 C T DLGAP3 Missense_Mutation p.R51K 0.36 deleterious(0.01) possibly_damaging(0.899) TCGA-EE-A2MS-06 1 35972665 35972665 G A KIAA0319L Missense_Mutation p.H72Y 0.34 tolerated_low_confidence(0.06) benign(0.005) TCGA-EE-A2MS-06 1 36752763 36752763 C T THRAP3 Missense_Mutation p.P311L 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MS-06 1 36754862 36754862 C T THRAP3 Silent p.L414L 0.35 TCGA-EE-A2MS-06 1 36769490 36769490 C T THRAP3 Missense_Mutation p.R914W 0.40 deleterious(0) possibly_damaging(0.738) TCGA-EE-A2MS-06 1 37356674 37356674 C T GRIK3 Missense_Mutation p.G47S 0.44 tolerated(0.25) benign(0.023) TCGA-EE-A2MS-06 1 38078580 38078580 C T RSPO1 Silent p.R213R 0.39 TCGA-EE-A2MS-06 1 38435130 38435130 G A SF3A3 Missense_Mutation p.P393S 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MS-06 1 39797699 39797699 C T MACF1 Intron 0.50 TCGA-EE-A2MS-06 1 40033149 40033149 G A PABPC4 Intron 0.50 TCGA-EE-A2MS-06 1 41300771 41300771 G C KCNQ4 Splice_Site p.X582_splice 0.31 TCGA-EE-A2MS-06 1 42045623 42045623 G A HIVEP3 Missense_Mutation p.H1616Y 0.40 possibly_damaging(0.834) TCGA-EE-A2MS-06 1 43393399 43393399 G A SLC2A1 Silent p.P385P 0.56 TCGA-EE-A2MS-06 1 43613734 43613734 C T FAM183A Missense_Mutation p.H38Y 0.35 tolerated(0.42) possibly_damaging(0.881) TCGA-EE-A2MS-06 1 43818335 43818335 G A MPL Silent p.G600G 0.35 TCGA-EE-A2MS-06 1 43855557 43855557 C T SZT2 5'Flank 0.37 TCGA-EE-A2MS-06 1 44070902 44070902 G A PTPRF Silent p.S1059S 0.39 TCGA-EE-A2MS-06 1 44083121 44083121 C T PTPRF Silent p.I1359I 0.32 TCGA-EE-A2MS-06 1 44386159 44386159 C T ST3GAL3 Silent p.F345F 0.31 TCGA-EE-A2MS-06 1 44595756 44595756 G A KLF17 Silent p.G271G 0.45 TCGA-EE-A2MS-06 1 44596314 44596314 C T KLF17 Silent p.F352F 0.37 TCGA-EE-A2MS-06 1 45101295 45101295 C T RNF220 Intron 0.41 TCGA-EE-A2MS-06 1 45295074 45295074 C T PTCH2 Missense_Mutation p.M405I 0.27 deleterious(0.03) benign(0.41) TCGA-EE-A2MS-06 1 46509267 46509267 G A PIK3R3 3'UTR 0.40 TCGA-EE-A2MS-06 1 47366065 47366065 G A CYP4Z2P RNA 0.43 TCGA-EE-A2MS-06 1 47610393 47610393 G A CYP4A22 Missense_Mutation p.D357N 0.27 tolerated(0.09) benign(0.327) TCGA-EE-A2MS-06 1 47685433 47685433 G A TAL1 Missense_Mutation p.P319S 0.30 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-EE-A2MS-06 1 52912062 52912062 C A ZCCHC11 Missense_Mutation p.W1189L 0.29 deleterious(0.02) benign(0.388) TCGA-EE-A2MS-06 1 52912063 52912063 A G ZCCHC11 Missense_Mutation p.W1189R 0.29 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MS-06 1 54060041 54060041 G A GLIS1 Missense_Mutation p.L179F 0.60 tolerated(0.06) possibly_damaging(0.739) TCGA-EE-A2MS-06 1 54254856 54254856 G A NDC1 Missense_Mutation p.S550F 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 1 55050413 55050413 G A ACOT11 Missense_Mutation p.G40E 0.21 tolerated(0.77) benign(0.003) TCGA-EE-A2MS-06 1 55077409 55077409 C T FAM151A Silent p.L270L 0.29 TCGA-EE-A2MS-06 1 55089042 55089042 C T FAM151A Silent p.K9K 0.39 TCGA-EE-A2MS-06 1 55167895 55167895 G A MROH7 Missense_Mutation p.E1140K 0.38 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2MS-06 1 55474404 55474404 T C BSND 3'UTR 0.41 TCGA-EE-A2MS-06 1 55525299 55525299 C T PCSK9 Silent p.T548T 0.42 TCGA-EE-A2MS-06 1 56962285 56962285 G A PPAP2B Missense_Mutation p.R292W 0.44 deleterious(0) possibly_damaging(0.517) TCGA-EE-A2MS-06 1 57002660 57002660 G A PPAP2B Silent p.L88L 0.31 TCGA-EE-A2MS-06 1 57476456 57476456 C T DAB1 Missense_Mutation p.G527E 0.43 tolerated(0.32) benign(0.005) TCGA-EE-A2MS-06 1 59126878 59126878 G A MYSM1 Silent p.I764I 0.23 TCGA-EE-A2MS-06 1 59844482 59844482 C T FGGY Missense_Mutation p.S176L 0.26 deleterious(0) possibly_damaging(0.796) TCGA-EE-A2MS-06 1 60370593 60370593 G A CYP2J2 Missense_Mutation p.P381S 0.38 deleterious(0.05) possibly_damaging(0.58) TCGA-EE-A2MS-06 1 60499176 60499176 G A C1orf87 Missense_Mutation p.S334L 0.28 deleterious(0.01) possibly_damaging(0.752) TCGA-EE-A2MS-06 1 6314159 6314159 C T GPR153 Nonsense_Mutation p.W135* 0.57 TCGA-EE-A2MS-06 1 64120033 64120033 C T PGM1 Nonsense_Mutation p.R517* 0.34 TCGA-EE-A2MS-06 1 64643679 64643679 C T ROR1 Missense_Mutation p.S652F 0.35 deleterious(0) probably_damaging(0.953) TCGA-EE-A2MS-06 1 65255101 65255101 G A RAVER2 Missense_Mutation p.E337K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 1 65851392 65851392 C T DNAJC6 Intron 0.48 TCGA-EE-A2MS-06 1 66102367 66102367 G A LEPR Missense_Mutation p.G1056E 0.35 tolerated(0.08) benign(0.327) TCGA-EE-A2MS-06 1 67411848 67411848 C T MIER1 Missense_Mutation p.S70L 0.39 deleterious(0) probably_damaging(0.974) TCGA-EE-A2MS-06 1 67880961 67880961 G A SERBP1 Missense_Mutation p.S353F 0.48 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MS-06 1 69379 69379 C T OR4F5 Missense_Mutation p.L97F 0.37 deleterious(0.03) benign(0.095) TCGA-EE-A2MS-06 1 69517 69517 G A OR4F5 Missense_Mutation p.G143R 0.24 deleterious(0.03) possibly_damaging(0.871) TCGA-EE-A2MS-06 1 70618143 70618143 A T LRRC40 Missense_Mutation p.L471H 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 1 75596529 75596529 C T LHX8 Intron 0.50 TCGA-EE-A2MS-06 1 75596530 75596530 C T LHX8 Intron 0.44 TCGA-EE-A2MS-06 1 75716951 75716951 G A SLC44A5 Silent p.L97L 0.31 TCGA-EE-A2MS-06 1 78383812 78383812 A G NEXN Missense_Mutation p.T101A 0.43 deleterious(0.04) benign(0.311) TCGA-EE-A2MS-06 1 78958855 78958855 C T PTGFR Missense_Mutation p.H143Y 0.31 deleterious(0) possibly_damaging(0.863) TCGA-EE-A2MS-06 1 79357242 79357242 G A ELTD1 Silent p.F659F 0.45 TCGA-EE-A2MS-06 1 8073389 8073389 G A ERRFI1 Nonsense_Mutation p.Q424* 0.59 TCGA-EE-A2MS-06 1 82409444 82409444 C T LPHN2 Missense_Mutation p.P397S 0.32 tolerated(0.1) possibly_damaging(0.906) TCGA-EE-A2MS-06 1 84408173 84408173 C T TTLL7 Silent p.K232K 0.50 TCGA-EE-A2MS-06 1 94362304 94362304 T A GCLM Missense_Mutation p.N137I 0.39 tolerated(0.07) benign(0.011) TCGA-EE-A2MS-06 1 94544976 94544976 G A ABCA4 Missense_Mutation p.P381S 0.43 deleterious(0.01) benign(0.217) TCGA-EE-A2MS-06 1 94645387 94645387 T G ARHGAP29 Missense_Mutation p.M792L 0.47 tolerated(0.83) benign(0.002) TCGA-EE-A2MS-06 1 97278483 97278483 C T PTBP2 Missense_Mutation p.P463S 0.39 deleterious(0.01) benign(0.032) TCGA-EE-A2MS-06 1 97564164 97564164 G A DPYD Silent p.L883L 0.35 TCGA-EE-A2MS-06 1 9784371 9784371 T A PIK3CD Missense_Mutation p.F919Y 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 1 97981487 97981487 C T DPYD Missense_Mutation p.G512E 0.35 deleterious(0) possibly_damaging(0.703) TCGA-EE-A2MS-06 1 98348837 98348837 G A DPYD Missense_Mutation p.P45S 0.42 tolerated(0.72) benign(0) TCGA-EE-A2MS-06 20 10604013 10604013 G A SLX4IP Missense_Mutation p.E405K 0.67 tolerated_low_confidence(0.18) benign(0.009) TCGA-EE-A2MS-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.75 tolerated(0.25) probably_damaging(0.996) TCGA-EE-A2MS-06 20 13280026 13280026 C T ISM1 Missense_Mutation p.P439S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 13695710 13695710 G A ESF1 Silent p.I789I 0.23 TCGA-EE-A2MS-06 20 1584658 1584658 C T SIRPB1 Intron 0.68 TCGA-EE-A2MS-06 20 16030510 16030510 G A MACROD2 Missense_Mutation p.G423R 0.21 deleterious_low_confidence(0.02) benign(0.236) TCGA-EE-A2MS-06 20 18794976 18794976 G A SCP2D1 3'UTR 0.26 TCGA-EE-A2MS-06 20 20033165 20033165 C T CRNKL1 Missense_Mutation p.G102E 0.19 deleterious_low_confidence(0) benign(0.025) TCGA-EE-A2MS-06 20 20037323 20037323 G A C20orf26 Missense_Mutation p.G9E 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 20 20563781 20563781 C T RALGAPA2 Missense_Mutation p.E874K 0.12 tolerated(0.15) benign(0.201) TCGA-EE-A2MS-06 20 21687255 21687255 G A PAX1 Missense_Mutation p.E156K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 22562714 22562714 G A FOXA2 Missense_Mutation p.S389F 0.71 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 20 24524125 24524125 G A SYNDIG1 Missense_Mutation p.G131E 0.33 tolerated(0.1) benign(0.33) TCGA-EE-A2MS-06 20 24565548 24565548 G A SYNDIG1 Silent p.R179R 0.28 TCGA-EE-A2MS-06 20 2473352 2473352 G A ZNF343 Silent p.L99L 0.58 TCGA-EE-A2MS-06 20 25442247 25442247 C T NINL Missense_Mutation p.V1203I 0.53 tolerated(0.47) benign(0.017) TCGA-EE-A2MS-06 20 25507211 25507211 C T NINL Missense_Mutation p.E5K 0.28 deleterious(0) possibly_damaging(0.87) TCGA-EE-A2MS-06 20 2778807 2778807 G A CPXM1 Missense_Mutation p.S194F 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 20 29623237 29623237 G A FRG1B Missense_Mutation p.E17K 0.03 tolerated(0.35) benign(0.002) TCGA-EE-A2MS-06 20 29966157 29966157 G A DEFB118 3'Flank 0.34 TCGA-EE-A2MS-06 20 29976790 29976790 G A DEFB119 3'UTR 0.59 TCGA-EE-A2MS-06 20 30419644 30419644 C T MYLK2 Silent p.I521I 0.61 TCGA-EE-A2MS-06 20 30784839 30784839 G A PLAGL2 Missense_Mutation p.P303S 0.41 tolerated(0.4) benign(0.055) TCGA-EE-A2MS-06 20 30804422 30804422 C T POFUT1 Missense_Mutation p.P147L 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 30919041 30919041 G A KIF3B Silent p.R721R 0.40 TCGA-EE-A2MS-06 20 31424587 31424587 C T MAPRE1 Missense_Mutation p.P139S 0.32 tolerated(0.15) benign(0.01) TCGA-EE-A2MS-06 20 31424588 31424588 C T MAPRE1 Missense_Mutation p.P139L 0.33 deleterious(0.01) benign(0.018) TCGA-EE-A2MS-06 20 31585481 31585481 A T SUN5 Missense_Mutation p.F118Y 0.29 tolerated(0.42) benign(0.007) TCGA-EE-A2MS-06 20 31600668 31600668 G A BPIFB2 Missense_Mutation p.G88E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 31897617 31897617 G A BPIFB1 3'UTR 0.30 TCGA-EE-A2MS-06 20 31967359 31967359 G A CDK5RAP1 Missense_Mutation p.R339C 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 20 31975249 31975249 G A CDK5RAP1 Missense_Mutation p.P212L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 31997998 31997998 G T SNTA1 Missense_Mutation p.R394S 0.35 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MS-06 20 33874493 33874493 C T FAM83C Missense_Mutation p.E697K 0.31 tolerated_low_confidence(0.17) benign(0.038) TCGA-EE-A2MS-06 20 33891791 33891791 G A UQCC1 Missense_Mutation p.P283S 0.26 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A2MS-06 20 33999785 33999785 C T UQCC1 5'UTR 0.59 TCGA-EE-A2MS-06 20 34446251 34446251 G A PHF20 Missense_Mutation p.G123E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 20 34556625 34556625 T A CNBD2 5'UTR 0.40 TCGA-EE-A2MS-06 20 35125333 35125333 G A DLGAP4 Missense_Mutation p.G625E 0.23 tolerated(0.89) benign(0.087) TCGA-EE-A2MS-06 20 35882724 35882724 T C GHRH Missense_Mutation p.N66S 0.11 tolerated(0.65) benign(0.038) TCGA-EE-A2MS-06 20 36560175 36560175 G A VSTM2L Nonsense_Mutation p.W87* 0.20 TCGA-EE-A2MS-06 20 36999435 36999435 C T LBP Silent p.F401F 0.18 TCGA-EE-A2MS-06 20 3725570 3725570 G A HSPA12B Silent p.P96P 0.65 TCGA-EE-A2MS-06 20 37400491 37400491 C T ACTR5 3'UTR 0.42 TCGA-EE-A2MS-06 20 39990831 39990831 C T EMILIN3 Missense_Mutation p.G460R 0.37 deleterious(0.04) possibly_damaging(0.58) TCGA-EE-A2MS-06 20 40710652 40710652 C T PTPRT Missense_Mutation p.G1381E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 40980844 40980844 C T PTPRT Missense_Mutation p.E548K 0.37 tolerated(0.09) benign(0.44) TCGA-EE-A2MS-06 20 41306689 41306689 C T PTPRT Missense_Mutation p.E324K 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2MS-06 20 42169682 42169682 C T L3MBTL1 Silent p.L813L 0.19 TCGA-EE-A2MS-06 20 42265791 42265791 C T IFT52 Missense_Mutation p.P340S 0.50 deleterious(0.03) benign(0.103) TCGA-EE-A2MS-06 20 42694442 42694442 G A TOX2 Missense_Mutation p.G351S 0.51 tolerated(0.31) possibly_damaging(0.765) TCGA-EE-A2MS-06 20 42697297 42697297 C T TOX2 Missense_Mutation p.P498S 0.50 tolerated(0.41) probably_damaging(0.994) TCGA-EE-A2MS-06 20 43052704 43052704 C T HNF4A Silent p.S313S 0.15 TCGA-EE-A2MS-06 20 43386794 43386794 C T RIMS4 Missense_Mutation p.D91N 0.13 deleterious_low_confidence(0) benign(0.113) TCGA-EE-A2MS-06 20 43804764 43804764 C T PI3 Silent p.F114F 0.38 TCGA-EE-A2MS-06 20 43836048 43836048 C T SEMG1 Missense_Mutation p.S37F 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A2MS-06 20 43850450 43850450 C T SEMG2 Silent p.S59S 0.33 TCGA-EE-A2MS-06 20 44052929 44052929 C T PIGT Silent p.A436A 0.33 TCGA-EE-A2MS-06 20 44505700 44505700 C T ZSWIM3 Missense_Mutation p.P168L 0.38 deleterious(0.01) possibly_damaging(0.642) TCGA-EE-A2MS-06 20 44596100 44596100 G A ZNF335 Intron 0.12 TCGA-EE-A2MS-06 20 47262529 47262529 G A PREX1 Silent p.A1124A 0.48 TCGA-EE-A2MS-06 20 47268117 47268117 G A PREX1 Silent p.F824F 0.53 TCGA-EE-A2MS-06 20 47648699 47648699 A T ARFGEF2 Missense_Mutation p.E1726V 0.33 tolerated(0.07) benign(0.197) TCGA-EE-A2MS-06 20 49218928 49218928 C T FAM65C Missense_Mutation p.R443Q 0.36 tolerated(1) benign(0.002) TCGA-EE-A2MS-06 20 49551736 49551736 G A DPM1 Missense_Mutation p.S239F 0.19 deleterious(0.02) possibly_damaging(0.799) TCGA-EE-A2MS-06 20 49620632 49620632 G A KCNG1 Nonsense_Mutation p.Q496* 0.30 TCGA-EE-A2MS-06 20 50092036 50092036 G A NFATC2 Silent p.V498V 0.31 TCGA-EE-A2MS-06 20 52192387 52192387 G A ZNF217 Silent p.F972F 0.13 TCGA-EE-A2MS-06 20 54974321 54974321 C T CSTF1 Missense_Mutation p.S315F 0.22 deleterious(0.02) benign(0.025) TCGA-EE-A2MS-06 20 55020983 55020983 C T CASS4 Missense_Mutation p.R163W 0.49 tolerated(0.13) benign(0.032) TCGA-EE-A2MS-06 20 56083709 56083709 G A CTCFL Missense_Mutation p.P543S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 56140548 56140548 G A PCK1 Silent p.K519K 0.28 TCGA-EE-A2MS-06 20 57415767 57415767 G A RP4-806M20.3 5'Flank 0.14 TCGA-EE-A2MS-06 20 57599608 57599608 G A TUBB1 Missense_Mutation p.E376K 0.52 deleterious_low_confidence(0) benign(0.34) TCGA-EE-A2MS-06 20 58442899 58442899 G A SYCP2 Missense_Mutation p.S1331F 0.13 tolerated(0.14) benign(0.005) TCGA-EE-A2MS-06 20 58645808 58645808 G A C20orf197 Missense_Mutation p.G76R 0.45 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A2MS-06 20 5904347 5904347 G A CHGB Silent p.G519G 0.54 TCGA-EE-A2MS-06 20 5923407 5923407 G A TRMT6 Silent p.Y231Y 0.77 TCGA-EE-A2MS-06 20 60448830 60448830 C T CDH4 Silent p.T308T 0.36 TCGA-EE-A2MS-06 20 60504813 60504813 G A CDH4 Missense_Mutation p.D718N 0.54 tolerated(0.19) possibly_damaging(0.811) TCGA-EE-A2MS-06 20 60791640 60791640 G A HRH3 Missense_Mutation p.P254S 0.44 tolerated(0.51) benign(0.006) TCGA-EE-A2MS-06 20 60886054 60886054 G A LAMA5 Silent p.F3395F 0.11 TCGA-EE-A2MS-06 20 60903380 60903380 G A LAMA5 Silent p.V1523V 0.11 TCGA-EE-A2MS-06 20 61143380 61143380 C T C20orf166 5'Flank 0.18 TCGA-EE-A2MS-06 20 61445075 61445075 G A OGFR 3'UTR 0.47 TCGA-EE-A2MS-06 20 61461890 61461890 G A COL9A3 Missense_Mutation p.D413N 0.43 tolerated(0.34) probably_damaging(0.974) TCGA-EE-A2MS-06 20 61510928 61510928 C T DIDO1 Missense_Mutation p.R2127Q 0.38 benign(0.321) TCGA-EE-A2MS-06 20 61512276 61512276 C T DIDO1 Missense_Mutation p.G1678S 0.50 possibly_damaging(0.536) TCGA-EE-A2MS-06 20 61513284 61513284 G A DIDO1 Missense_Mutation p.L1342F 0.23 benign(0.135) TCGA-EE-A2MS-06 20 61937319 61937319 G A COL20A1 Missense_Mutation p.G142R 0.09 tolerated(0.1) benign(0.022) TCGA-EE-A2MS-06 20 61941816 61941816 C T COL20A1 Silent p.I449I 0.44 TCGA-EE-A2MS-06 20 62073779 62073779 C T KCNQ2 Missense_Mutation p.D266N 0.20 deleterious(0) probably_damaging(0.962) TCGA-EE-A2MS-06 20 62197221 62197221 G A HELZ2 Missense_Mutation p.A985V 0.75 tolerated(0.48) benign(0.345) TCGA-EE-A2MS-06 20 62364577 62364577 C T ZGPAT Silent p.S197S 0.15 TCGA-EE-A2MS-06 20 62364578 62364578 C T ZGPAT Missense_Mutation p.H198Y 0.15 deleterious(0) possibly_damaging(0.902) TCGA-EE-A2MS-06 20 62598735 62598735 G A ZNF512B Missense_Mutation p.P88L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 20 62853301 62853301 C T MYT1 Missense_Mutation p.S766L 0.38 benign(0.031) TCGA-EE-A2MS-06 20 9404516 9404516 G A PLCB4 Missense_Mutation p.R802Q 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 20 9560902 9560902 C T PAK7 Missense_Mutation p.E294K 0.69 tolerated(0.23) probably_damaging(0.98) TCGA-EE-A2MS-06 21 10920107 10920107 G A TPTE Nonsense_Mutation p.Q383* 0.11 TCGA-EE-A2MS-06 21 10934997 10934997 C T TPTE Missense_Mutation p.E266K 0.14 deleterious(0.02) possibly_damaging(0.775) TCGA-EE-A2MS-06 21 10951333 10951333 G A TPTE Missense_Mutation p.R127C 0.23 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A2MS-06 21 10951384 10951384 G A TPTE Missense_Mutation p.L110F 0.28 tolerated(0.07) benign(0.013) TCGA-EE-A2MS-06 21 15755503 15755503 C T HSPA13 5'UTR 0.33 TCGA-EE-A2MS-06 21 18966434 18966434 G A BTG3 Missense_Mutation p.P290S 0.30 tolerated(0.21) benign(0.094) TCGA-EE-A2MS-06 21 27062200 27062200 C T JAM2 Silent p.T52T 0.26 TCGA-EE-A2MS-06 21 30934107 30934107 G A GRIK1 Silent p.L732L 0.35 TCGA-EE-A2MS-06 21 31692180 31692180 C T KRTAP26-1 Silent p.E58E 0.39 TCGA-EE-A2MS-06 21 31744114 31744114 G A KRTAP13-2 Missense_Mutation p.L140F 0.36 deleterious(0.04) benign(0.236) TCGA-EE-A2MS-06 21 31852459 31852459 C T KRTAP19-1 Missense_Mutation p.G60R 0.38 tolerated_low_confidence(0.35) unknown(0) TCGA-EE-A2MS-06 21 31986117 31986117 G A KRTAP6-1 Missense_Mutation p.S36F 0.40 unknown(0) TCGA-EE-A2MS-06 21 32639059 32639059 G A TIAM1 Missense_Mutation p.S77F 0.36 deleterious_low_confidence(0) benign(0.309) TCGA-EE-A2MS-06 21 34004071 34004071 G A SYNJ1 Missense_Mutation p.P1358L 0.36 tolerated_low_confidence(0.15) benign(0.003) TCGA-EE-A2MS-06 21 34018742 34018742 G C SYNJ1 Missense_Mutation p.R1109G 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 21 35467820 35467820 C T SLC5A3 Missense_Mutation p.T108I 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 21 37602821 37602821 C T DOPEY2 Missense_Mutation p.S580L 0.21 tolerated(0.19) benign(0.001) TCGA-EE-A2MS-06 21 38525529 38525529 G A TTC3 Missense_Mutation p.E898K 0.14 deleterious(0) possibly_damaging(0.881) TCGA-EE-A2MS-06 21 38529064 38529064 G A TTC3 Missense_Mutation p.D950N 0.12 tolerated(0.25) benign(0.005) TCGA-EE-A2MS-06 21 39086976 39086976 C T KCNJ6 Missense_Mutation p.D162N 0.22 deleterious(0) possibly_damaging(0.807) TCGA-EE-A2MS-06 21 39087043 39087043 G A KCNJ6 Silent p.F139F 0.19 TCGA-EE-A2MS-06 21 39087068 39087068 G A KCNJ6 Missense_Mutation p.P131L 0.21 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 21 39580310 39580310 G A DSCR10 RNA 0.26 TCGA-EE-A2MS-06 21 41300911 41300911 G A PCP4 Missense_Mutation p.G22R 0.16 deleterious_low_confidence(0.03) benign(0.245) TCGA-EE-A2MS-06 21 41447141 41447141 C T DSCAM Splice_Site p.X1571_splice 0.21 TCGA-EE-A2MS-06 21 41711233 41711233 C A DSCAM Missense_Mutation p.W440C 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 21 41711234 41711234 C T DSCAM Nonsense_Mutation p.W440* 0.17 TCGA-EE-A2MS-06 21 41719712 41719712 G A DSCAM Silent p.I365I 0.66 TCGA-EE-A2MS-06 21 43240524 43240524 G A PRDM15 Silent p.I1055I 0.29 TCGA-EE-A2MS-06 21 43531747 43531747 G A UMODL1 Silent p.E805E 0.25 TCGA-EE-A2MS-06 21 43621759 43621759 C T ABCG1 5'UTR 0.69 TCGA-EE-A2MS-06 21 43809058 43809058 C T TMPRSS3 Missense_Mutation p.G101E 0.10 deleterious(0.03) probably_damaging(0.949) TCGA-EE-A2MS-06 21 44000486 44000486 C T SLC37A1 3'UTR 0.47 TCGA-EE-A2MS-06 21 45107874 45107874 C T RRP1B Missense_Mutation p.P540L 0.17 tolerated(0.92) benign(0) TCGA-EE-A2MS-06 21 45152403 45152403 C T PDXK Intron 0.25 TCGA-EE-A2MS-06 21 45194063 45194063 G A CSTB 3'UTR 0.64 TCGA-EE-A2MS-06 21 45194064 45194064 G A CSTB 3'UTR 0.63 TCGA-EE-A2MS-06 21 45379681 45379681 C T AGPAT3 Missense_Mutation p.P40L 0.16 tolerated(0.07) benign(0.127) TCGA-EE-A2MS-06 21 45518311 45518311 C T TRAPPC10 Missense_Mutation p.S1081F 0.24 tolerated(0.06) possibly_damaging(0.722) TCGA-EE-A2MS-06 21 45710689 45710689 C T AIRE Intron 0.72 TCGA-EE-A2MS-06 21 45710883 45710883 G A AIRE Intron 0.18 TCGA-EE-A2MS-06 21 45736130 45736130 C T PFKL Missense_Mutation p.R251W 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 21 45784063 45784063 C T TRPM2 Silent p.T107T 0.30 TCGA-EE-A2MS-06 21 45798897 45798897 C T TRPM2 Silent p.T344T 0.37 TCGA-EE-A2MS-06 21 45811262 45811262 G A TRPM2 Nonsense_Mutation p.W516* 0.13 TCGA-EE-A2MS-06 21 45860727 45860727 C T TRPM2 Missense_Mutation p.T1442M 0.45 tolerated(0.06) probably_damaging(0.921) TCGA-EE-A2MS-06 21 45861646 45861646 G A TRPM2 Silent p.A1486A 0.26 TCGA-EE-A2MS-06 21 45929240 45929240 G A TSPEAR Silent p.F532F 0.22 TCGA-EE-A2MS-06 21 45947249 45947249 C T TSPEAR Missense_Mutation p.E359K 0.14 deleterious(0.03) benign(0.016) TCGA-EE-A2MS-06 21 45950937 45950937 C T TSPEAR Missense_Mutation p.G208S 0.14 tolerated(0.05) probably_damaging(0.983) TCGA-EE-A2MS-06 21 45953616 45953616 G A TSPEAR Missense_Mutation p.S165F 0.15 deleterious(0) benign(0.406) TCGA-EE-A2MS-06 21 45993706 45993706 C T KRTAP10-4 Missense_Mutation p.S24F 0.18 deleterious(0) probably_damaging(0.93) TCGA-EE-A2MS-06 21 45994708 45994708 C T KRTAP10-4 Missense_Mutation p.S358F 0.13 deleterious(0) unknown(0) TCGA-EE-A2MS-06 21 46058033 46058033 C T KRTAP10-10 Silent p.P233P 0.70 TCGA-EE-A2MS-06 21 46101730 46101730 G A KRTAP12-1 3'UTR 0.28 TCGA-EE-A2MS-06 21 46888697 46888697 C T COL18A1 Silent p.F396F 0.45 TCGA-EE-A2MS-06 21 47545416 47545416 C T COL6A2 Silent p.F618F 0.20 TCGA-EE-A2MS-06 21 47662798 47662798 C T MCM3AP Missense_Mutation p.D1782N 0.13 tolerated(0.17) benign(0.01) TCGA-EE-A2MS-06 21 47697595 47697595 G A MCM3AP Silent p.H568H 0.20 TCGA-EE-A2MS-06 21 47754535 47754535 C T PCNT Silent p.H164H 0.15 TCGA-EE-A2MS-06 21 47801634 47801634 C T PCNT Missense_Mutation p.T1064I 0.17 benign(0.003) TCGA-EE-A2MS-06 21 47831942 47831942 C T PCNT Silent p.S1985S 0.17 TCGA-EE-A2MS-06 22 17445721 17445721 G A GAB4 Missense_Mutation p.P471S 0.19 tolerated(0.15) possibly_damaging(0.857) TCGA-EE-A2MS-06 22 18301606 18301606 G A MICAL3 Missense_Mutation p.S1274F 0.32 possibly_damaging(0.787) TCGA-EE-A2MS-06 22 18389393 18389393 G A MICAL3 Silent p.A62A 0.91 TCGA-EE-A2MS-06 22 19230400 19230400 G A CLTCL1 Silent p.P193P 0.30 TCGA-EE-A2MS-06 22 19348765 19348765 G A HIRA Missense_Mutation p.L694F 0.91 tolerated(0.29) benign(0.02) TCGA-EE-A2MS-06 22 21081523 21081523 G A PI4KA Missense_Mutation p.P1646S 0.67 deleterious(0) possibly_damaging(0.842) TCGA-EE-A2MS-06 22 21800874 21800874 G A HIC2 Missense_Mutation p.D564N 0.87 tolerated(0.08) benign(0.305) TCGA-EE-A2MS-06 22 22677072 22677072 G A IGLV1-51 Missense_Mutation p.G34R 0.84 deleterious(0.03) probably_damaging(0.944) TCGA-EE-A2MS-06 22 22869154 22869154 G A ZNF280A Silent p.P267P 0.15 TCGA-EE-A2MS-06 22 23503099 23503099 C T RAB36 Missense_Mutation p.A284V 0.70 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MS-06 22 24086047 24086047 G A ZNF70 Silent p.S427S 0.91 TCGA-EE-A2MS-06 22 26270264 26270264 G A MYO18B Silent p.K1321K 0.88 TCGA-EE-A2MS-06 22 26423113 26423113 G A MYO18B Silent p.V2391V 0.69 TCGA-EE-A2MS-06 22 26423526 26423526 G A MYO18B Missense_Mutation p.G2529E 0.92 tolerated(0.05) benign(0.167) TCGA-EE-A2MS-06 22 26706777 26706777 C T SEZ6L Silent p.A552A 0.87 TCGA-EE-A2MS-06 22 26707874 26707874 G A SEZ6L Missense_Mutation p.E608K 0.89 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MS-06 22 26777997 26777997 G A SEZ6L 3'Flank 0.25 TCGA-EE-A2MS-06 22 29835098 29835098 G A RFPL1 Silent p.L106L 0.22 TCGA-EE-A2MS-06 22 30766437 30766437 C T CCDC157 Silent p.P181P 0.90 TCGA-EE-A2MS-06 22 30887849 30887849 C T SEC14L4 Missense_Mutation p.E295K 0.95 deleterious(0.01) possibly_damaging(0.757) TCGA-EE-A2MS-06 22 30891336 30891336 C T SEC14L4 Missense_Mutation p.G110S 0.91 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MS-06 22 31328894 31328894 G C MORC2 Missense_Mutation p.T773R 0.69 deleterious_low_confidence(0.01) benign(0.232) TCGA-EE-A2MS-06 22 31338233 31338233 T A MORC2 Missense_Mutation p.N89I 0.85 deleterious(0.05) possibly_damaging(0.857) TCGA-EE-A2MS-06 22 33700406 33700406 G A LARGE Silent p.F513F 0.19 TCGA-EE-A2MS-06 22 35480387 35480387 G A ISX Silent p.Q131Q 0.23 TCGA-EE-A2MS-06 22 37334086 37334086 C T CSF2RB Missense_Mutation p.P746S 0.17 tolerated(0.4) benign(0.285) TCGA-EE-A2MS-06 22 37966292 37966292 G A LGALS2 Missense_Mutation p.S126F 0.94 deleterious(0) probably_damaging(0.936) TCGA-EE-A2MS-06 22 39621782 39621782 C T PDGFB Silent p.R224R 0.28 TCGA-EE-A2MS-06 22 39711306 39711306 G A RPL3 Intron 0.91 TCGA-EE-A2MS-06 22 39817844 39817844 C T TAB1 Silent p.S263S 0.15 TCGA-EE-A2MS-06 22 40057191 40057191 C T CACNA1I Missense_Mutation p.P926L 0.68 tolerated(0.22) possibly_damaging(0.713) TCGA-EE-A2MS-06 22 40066866 40066866 C T CACNA1I Silent p.S1482S 0.18 TCGA-EE-A2MS-06 22 40417373 40417373 G A FAM83F Missense_Mutation p.E287K 0.91 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A2MS-06 22 40417616 40417616 G A FAM83F Missense_Mutation p.A368T 0.90 tolerated(0.29) benign(0.013) TCGA-EE-A2MS-06 22 40662767 40662767 C T TNRC6B Missense_Mutation p.P845S 0.14 tolerated(0.21) benign(0.021) TCGA-EE-A2MS-06 22 40711447 40711447 C T TNRC6B Silent p.P1613P 0.71 TCGA-EE-A2MS-06 22 41320445 41320445 C T XPNPEP3 Missense_Mutation p.S439F 0.21 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 22 41564798 41564798 G T EP300 Missense_Mutation p.D1367Y 0.22 probably_damaging(1) TCGA-EE-A2MS-06 22 41735047 41735047 C T ZC3H7B Missense_Mutation p.S223F 0.53 deleterious(0.01) benign(0.446) TCGA-EE-A2MS-06 22 42084871 42084871 G A NHP2L1 5'UTR 0.15 TCGA-EE-A2MS-06 22 42536660 42536660 G A NDUFA6-AS1 3'Flank 0.40 TCGA-EE-A2MS-06 22 42536661 42536661 G A NDUFA6-AS1 3'Flank 0.40 TCGA-EE-A2MS-06 22 43616481 43616481 G A SCUBE1 Silent p.I554I 0.18 TCGA-EE-A2MS-06 22 45133024 45133024 C T PRR5 Missense_Mutation p.S378F 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MS-06 22 45312464 45312464 C T PHF21B Missense_Mutation p.G87D 0.70 tolerated_low_confidence(0.07) probably_damaging(0.945) TCGA-EE-A2MS-06 22 45312465 45312465 C T PHF21B Missense_Mutation p.G87S 0.69 tolerated_low_confidence(0.47) possibly_damaging(0.848) TCGA-EE-A2MS-06 22 46318697 46318697 C T WNT7B 3'UTR 0.11 TCGA-EE-A2MS-06 22 46653108 46653108 T G PKDREJ Missense_Mutation p.I2038L 0.20 tolerated(0.11) benign(0.41) TCGA-EE-A2MS-06 22 46708096 46708096 C T GTSE1 Missense_Mutation p.S274F 0.54 tolerated(0.37) benign(0.006) TCGA-EE-A2MS-06 22 46932281 46932281 G A CELSR1 Missense_Mutation p.L263F 0.72 tolerated(0.7) benign(0.433) TCGA-EE-A2MS-06 22 46932282 46932282 G A CELSR1 Silent p.T262T 0.71 TCGA-EE-A2MS-06 22 47022827 47022827 C T GRAMD4 Missense_Mutation p.S44L 0.17 tolerated(0.2) benign(0.001) TCGA-EE-A2MS-06 22 50171394 50171394 G A BRD1 Silent p.A844A 0.15 TCGA-EE-A2MS-06 22 51011367 51011367 G T CPT1B Missense_Mutation p.P430H 0.14 tolerated(0.11) benign(0.033) TCGA-EE-A2MS-06 22 51063675 51063675 G A ARSA Silent p.P476P 0.65 TCGA-EE-A2MS-06 22 51065039 51065039 G A ARSA Silent p.V278V 0.69 TCGA-EE-A2MS-06 2 100058907 100058907 G A REV1 Silent p.S125S 0.25 TCGA-EE-A2MS-06 2 10105480 10105480 C T GRHL1 Silent p.S360S 0.30 TCGA-EE-A2MS-06 2 101598812 101598812 C T NPAS2 Silent p.L534L 0.11 TCGA-EE-A2MS-06 2 101666995 101666995 G A TBC1D8 Missense_Mutation p.S232F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 2 102480344 102480344 C T MAP4K4 Intron 0.52 TCGA-EE-A2MS-06 2 102782592 102782592 T G IL1R1 Missense_Mutation p.L169R 0.53 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 2 103039701 103039701 G A IL18RAP 5'UTR 0.24 TCGA-EE-A2MS-06 2 103040547 103040547 C T IL18RAP Missense_Mutation p.P116L 0.62 tolerated(0.2) benign(0.012) TCGA-EE-A2MS-06 2 103236460 103236460 C T SLC9A2 Silent p.S51S 0.40 TCGA-EE-A2MS-06 2 103236461 103236461 C T SLC9A2 Missense_Mutation p.P52S 0.40 tolerated(0.21) probably_damaging(0.986) TCGA-EE-A2MS-06 2 103317575 103317575 G A SLC9A2 Missense_Mutation p.E545K 0.35 tolerated(0.36) probably_damaging(0.993) TCGA-EE-A2MS-06 2 103322376 103322376 G A SLC9A2 Silent p.R683R 0.28 TCGA-EE-A2MS-06 2 103414344 103414344 C T TMEM182 Silent p.V118V 0.36 TCGA-EE-A2MS-06 2 10560105 10560105 C T HPCAL1 Silent p.T74T 0.20 TCGA-EE-A2MS-06 2 105858877 105858877 G A GPR45 Missense_Mutation p.E188K 0.65 tolerated(0.47) benign(0.044) TCGA-EE-A2MS-06 2 107041678 107041678 G A RGPD3 Silent p.S915S 0.13 TCGA-EE-A2MS-06 2 107446620 107446620 T C ST6GAL2 Missense_Mutation p.Y407C 0.26 probably_damaging(1) TCGA-EE-A2MS-06 2 108476199 108476199 G A RGPD4 Silent p.L552L 0.25 TCGA-EE-A2MS-06 2 108627177 108627177 G A SLC5A7 Missense_Mutation p.E535K 0.45 tolerated(0.48) benign(0.007) TCGA-EE-A2MS-06 2 10927411 10927411 G A PDIA6 Missense_Mutation p.L385F 0.22 deleterious(0.03) possibly_damaging(0.85) TCGA-EE-A2MS-06 2 109383182 109383182 C T RANBP2 Missense_Mutation p.L2063F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 110849249 110849249 G A MALL Silent p.L68L 0.15 TCGA-EE-A2MS-06 2 112786453 112786453 G A MERTK 3'UTR 0.45 TCGA-EE-A2MS-06 2 113147112 113147112 G A RGPD8 Missense_Mutation p.S1137F 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 113310248 113310248 C T POLR1B Missense_Mutation p.S338F 0.11 deleterious(0.01) possibly_damaging(0.866) TCGA-EE-A2MS-06 2 113940778 113940778 C T PSD4 Missense_Mutation p.P249S 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MS-06 2 113943480 113943480 G A PSD4 Missense_Mutation p.E426K 0.55 tolerated_low_confidence(0.05) benign(0.02) TCGA-EE-A2MS-06 2 113953731 113953731 G A PSD4 Missense_Mutation p.E745K 0.23 deleterious(0.02) possibly_damaging(0.804) TCGA-EE-A2MS-06 2 113955447 113955447 C T PSD4 Nonsense_Mutation p.Q861* 0.24 TCGA-EE-A2MS-06 2 114369568 114369568 G A RPL23AP7 RNA 0.17 TCGA-EE-A2MS-06 2 115200327 115200327 G A DPP10 5'UTR 0.28 TCGA-EE-A2MS-06 2 116066879 116066879 T - DPP10 Frame_Shift_Del p.L47* 0.34 TCGA-EE-A2MS-06 2 1168853 1168853 G A SNTG2 Missense_Mutation p.G192E 0.50 tolerated(0.1) probably_damaging(0.935) TCGA-EE-A2MS-06 2 11728976 11728976 G A GREB1 Missense_Mutation p.E422K 0.28 deleterious(0.02) possibly_damaging(0.666) TCGA-EE-A2MS-06 2 119748191 119748191 G C MARCO Missense_Mutation p.G364R 0.33 deleterious(0) unknown(0) TCGA-EE-A2MS-06 2 120194767 120194767 C T TMEM37 Silent p.F108F 0.29 TCGA-EE-A2MS-06 2 125284989 125284989 G A CNTNAP5 Silent p.G534G 0.22 TCGA-EE-A2MS-06 2 125521678 125521678 C T CNTNAP5 Silent p.F828F 0.22 TCGA-EE-A2MS-06 2 128367446 128367446 T A MYO7B Missense_Mutation p.V1016D 0.50 deleterious(0) benign(0.333) TCGA-EE-A2MS-06 2 128466316 128466316 G A WDR33 Missense_Mutation p.P1239L 0.19 deleterious_low_confidence(0) benign(0.004) TCGA-EE-A2MS-06 2 128480907 128480907 C T WDR33 Missense_Mutation p.R404Q 0.24 deleterious(0) unknown(0) TCGA-EE-A2MS-06 2 128699649 128699649 G A SAP130 Silent p.V1061V 0.23 TCGA-EE-A2MS-06 2 128936107 128936107 C T UGGT1 Missense_Mutation p.S1260F 0.22 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MS-06 2 128936108 128936108 C A UGGT1 Silent p.S1260S 0.24 TCGA-EE-A2MS-06 2 130832852 130832852 G A POTEF Silent p.F731F 0.21 TCGA-EE-A2MS-06 2 132266173 132266173 C T AC093838.4 RNA 0.17 TCGA-EE-A2MS-06 2 133175238 133175238 C T GPR39 Missense_Mutation p.S208F 0.23 tolerated(0.1) possibly_damaging(0.855) TCGA-EE-A2MS-06 2 133636465 133636465 C T NCKAP5 Missense_Mutation p.E202K 0.21 deleterious(0) possibly_damaging(0.823) TCGA-EE-A2MS-06 2 135712241 135712241 C T CCNT2 3'UTR 0.45 TCGA-EE-A2MS-06 2 135781031 135781031 C A MAP3K19 Intron 0.10 TCGA-EE-A2MS-06 2 135781032 135781032 A C MAP3K19 Intron 0.10 TCGA-EE-A2MS-06 2 136547308 136547308 T A LCT Missense_Mutation p.E1799V 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 136567394 136567394 G A LCT Silent p.I841I 0.29 TCGA-EE-A2MS-06 2 138208522 138208522 C T THSD7B Nonsense_Mutation p.R1023* 0.26 TCGA-EE-A2MS-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.67 deleterious(0) unknown(0) TCGA-EE-A2MS-06 2 138330034 138330034 G A THSD7B Missense_Mutation p.D1114N 0.34 deleterious(0.01) unknown(0) TCGA-EE-A2MS-06 2 141081540 141081540 C T LRP1B Missense_Mutation p.G4146S 0.19 possibly_damaging(0.855) TCGA-EE-A2MS-06 2 141128357 141128357 G A LRP1B Missense_Mutation p.H3644Y 0.56 benign(0.415) TCGA-EE-A2MS-06 2 141135780 141135780 C T LRP1B Missense_Mutation p.G3536E 0.29 probably_damaging(0.982) TCGA-EE-A2MS-06 2 141274503 141274503 C T LRP1B Missense_Mutation p.D2702N 0.28 possibly_damaging(0.831) TCGA-EE-A2MS-06 2 144899570 144899570 G A GTDC1 Missense_Mutation p.L134F 0.53 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 2 149226450 149226450 C T MBD5 Missense_Mutation p.P313L 0.26 deleterious(0) possibly_damaging(0.851) TCGA-EE-A2MS-06 2 152520287 152520287 G A NEB Silent p.F1846F 0.24 TCGA-EE-A2MS-06 2 152534195 152534195 C T NEB Missense_Mutation p.G1220S 0.22 benign(0.023) TCGA-EE-A2MS-06 2 152695818 152695818 C T CACNB4 Missense_Mutation p.E460K 0.22 deleterious_low_confidence(0.03) benign(0.437) TCGA-EE-A2MS-06 2 158157239 158157239 C T GALNT5 Missense_Mutation p.H723Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 159201738 159201738 C T CCDC148 Silent p.L80L 0.34 TCGA-EE-A2MS-06 2 159530252 159530252 C T PKP4 Silent p.D996D 0.40 TCGA-EE-A2MS-06 2 159530253 159530253 C T PKP4 Missense_Mutation p.L997F 0.43 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 2 160732004 160732004 G A LY75-CD302 Missense_Mutation p.P642L 0.38 tolerated(0.09) probably_damaging(0.991) TCGA-EE-A2MS-06 2 160833802 160833802 G A PLA2R1 Silent p.I798I 0.18 TCGA-EE-A2MS-06 2 160833815 160833815 C T PLA2R1 Nonsense_Mutation p.W794* 0.17 TCGA-EE-A2MS-06 2 162751222 162751222 C T SLC4A10 Missense_Mutation p.R410C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 163163336 163163336 G A IFIH1 Missense_Mutation p.P218S 0.39 tolerated(0.16) benign(0.006) TCGA-EE-A2MS-06 2 163174848 163174848 C T IFIH1 5'UTR 0.46 TCGA-EE-A2MS-06 2 163241343 163241343 G A KCNH7 Silent p.S939S 0.42 TCGA-EE-A2MS-06 2 166019276 166019276 G A SCN3A Silent p.L253L 0.36 TCGA-EE-A2MS-06 2 166201289 166201289 C T SCN2A Silent p.F929F 0.32 TCGA-EE-A2MS-06 2 166201295 166201295 C T SCN2A Silent p.S931S 0.33 TCGA-EE-A2MS-06 2 166221650 166221650 C T SCN2A Intron 0.36 TCGA-EE-A2MS-06 2 166866246 166866246 G A SCN1A Nonsense_Mutation p.R1329* 0.30 TCGA-EE-A2MS-06 2 167055571 167055571 G A SCN9A Missense_Mutation p.R1849C 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 167151135 167151135 G A SCN9A Silent p.L313L 0.54 TCGA-EE-A2MS-06 2 167168250 167168250 G A SCN9A Missense_Mutation p.P6L 0.34 tolerated_low_confidence(0.08) benign(0.141) TCGA-EE-A2MS-06 2 168099639 168099639 G A XIRP2 Nonsense_Mutation p.W579* 0.50 TCGA-EE-A2MS-06 2 168099701 168099701 C T XIRP2 Missense_Mutation p.S600F 0.32 benign(0.015) TCGA-EE-A2MS-06 2 168102538 168102538 G A XIRP2 Missense_Mutation p.E1546K 0.23 possibly_damaging(0.897) TCGA-EE-A2MS-06 2 168102690 168102690 G A XIRP2 Silent p.Q1596Q 0.37 TCGA-EE-A2MS-06 2 169717389 169717389 G A NOSTRIN Missense_Mutation p.G479R 0.38 tolerated(0.11) benign(0.016) TCGA-EE-A2MS-06 2 170537609 170537609 C T CCDC173 Missense_Mutation p.E68K 0.30 tolerated(0.1) benign(0.02) TCGA-EE-A2MS-06 2 171371488 171371488 G A MYO3B Missense_Mutation p.G1143E 0.29 tolerated_low_confidence(0.38) benign(0) TCGA-EE-A2MS-06 2 171704187 171704187 G A GAD1 Missense_Mutation p.G335E 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 2 171804879 171804879 G A GORASP2 Missense_Mutation p.G28E 0.37 deleterious(0) benign(0.032) TCGA-EE-A2MS-06 2 173679042 173679042 G A RAPGEF4 Silent p.T111T 0.41 TCGA-EE-A2MS-06 2 176948122 176948122 G A EVX2 Missense_Mutation p.P128L 0.44 deleterious(0) possibly_damaging(0.554) TCGA-EE-A2MS-06 2 176981967 176981967 C T HOXD10 Missense_Mutation p.P136S 0.35 tolerated(0.59) benign(0.002) TCGA-EE-A2MS-06 2 179400315 179400315 C T TTN Missense_Mutation p.G33676E 0.31 TCGA-EE-A2MS-06 2 179426767 179426767 C T TTN Missense_Mutation p.G28031E 0.18 TCGA-EE-A2MS-06 2 179432657 179432657 C T TTN Missense_Mutation p.E26068K 0.39 TCGA-EE-A2MS-06 2 179452781 179452781 C T TTN Missense_Mutation p.R21118Q 0.30 TCGA-EE-A2MS-06 2 179469558 179469558 C T TTN Nonsense_Mutation p.W18086* 0.43 TCGA-EE-A2MS-06 2 179532199 179532199 G A TTN Missense_Mutation p.P11895S 0.29 TCGA-EE-A2MS-06 2 179577252 179577252 C T TTN Missense_Mutation p.G9133S 0.29 TCGA-EE-A2MS-06 2 179592968 179592968 C T TTN Missense_Mutation p.R6528K 0.13 TCGA-EE-A2MS-06 2 179595812 179595812 G A TTN Silent p.G5860G 0.42 TCGA-EE-A2MS-06 2 179597596 179597596 C T TTN Missense_Mutation p.G5436E 0.30 TCGA-EE-A2MS-06 2 179604819 179604819 C T TTN Missense_Mutation p.E4381K 0.38 TCGA-EE-A2MS-06 2 179610515 179610515 G A TTN Intron 0.49 TCGA-EE-A2MS-06 2 179611554 179611554 T C TTN Intron 0.29 TCGA-EE-A2MS-06 2 179613473 179613473 C T TTN Intron 0.37 TCGA-EE-A2MS-06 2 179617902 179617902 C T TTN Missense_Mutation p.E3754K 0.52 TCGA-EE-A2MS-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.35 TCGA-EE-A2MS-06 2 179639012 179639012 C T TTN Missense_Mutation p.D2327N 0.40 TCGA-EE-A2MS-06 2 179650595 179650595 C T TTN Missense_Mutation p.G784R 0.47 TCGA-EE-A2MS-06 2 179702159 179702159 C T CCDC141 Missense_Mutation p.E1263K 0.31 tolerated(0.14) benign(0.202) TCGA-EE-A2MS-06 2 179720257 179720257 C T CCDC141 Silent p.R959R 0.33 TCGA-EE-A2MS-06 2 179742691 179742691 C T CCDC141 Missense_Mutation p.M633I 0.22 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A2MS-06 2 182400256 182400256 G A ITGA4 3'UTR 0.32 TCGA-EE-A2MS-06 2 185800580 185800580 C T ZNF804A Nonsense_Mutation p.Q153* 0.54 TCGA-EE-A2MS-06 2 185801111 185801111 C T ZNF804A Missense_Mutation p.P330S 0.52 tolerated(0.61) probably_damaging(0.994) TCGA-EE-A2MS-06 2 185802718 185802718 C T ZNF804A Silent p.I865I 0.42 TCGA-EE-A2MS-06 2 185802839 185802839 G A ZNF804A Missense_Mutation p.E906K 0.32 tolerated(0.78) benign(0.038) TCGA-EE-A2MS-06 2 185803026 185803026 C T ZNF804A Missense_Mutation p.S968F 0.42 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MS-06 2 18736664 18736664 G A RDH14 Silent p.F268F 0.27 TCGA-EE-A2MS-06 2 187693226 187693226 C T ZSWIM2 Missense_Mutation p.E463K 0.28 deleterious(0.01) benign(0.024) TCGA-EE-A2MS-06 2 187693262 187693262 C T ZSWIM2 Missense_Mutation p.E451K 0.29 tolerated(1) benign(0) TCGA-EE-A2MS-06 2 187703747 187703747 C T ZSWIM2 Missense_Mutation p.D145N 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 188247997 188247997 C T CALCRL Silent p.E29E 0.48 TCGA-EE-A2MS-06 2 189855751 189855751 G A COL3A1 Missense_Mutation p.E274K 0.32 unknown(0) TCGA-EE-A2MS-06 2 190437582 190437582 C T SLC40A1 Missense_Mutation p.G126E 0.49 deleterious(0) possibly_damaging(0.714) TCGA-EE-A2MS-06 2 191937854 191937854 G A STAT4 Silent p.H145H 0.11 TCGA-EE-A2MS-06 2 196602810 196602810 C T DNAH7 Silent p.R3970R 0.24 TCGA-EE-A2MS-06 2 196659083 196659083 G A DNAH7 Silent p.F3565F 0.34 TCGA-EE-A2MS-06 2 196723387 196723387 C T DNAH7 Missense_Mutation p.M2626I 0.27 tolerated(0.18) benign(0.015) TCGA-EE-A2MS-06 2 196801391 196801391 G A DNAH7 Silent p.F1068F 0.33 TCGA-EE-A2MS-06 2 196866570 196866570 T C DNAH7 Silent p.E334E 0.33 TCGA-EE-A2MS-06 2 197065926 197065926 C T HECW2 3'UTR 0.44 TCGA-EE-A2MS-06 2 197183391 197183391 C T HECW2 Silent p.G741G 0.44 TCGA-EE-A2MS-06 2 197183418 197183418 C T HECW2 Silent p.E732E 0.35 TCGA-EE-A2MS-06 2 197185112 197185112 C T HECW2 Silent p.V312V 0.33 TCGA-EE-A2MS-06 2 197777618 197777618 G A PGAP1 Missense_Mutation p.R213C 0.33 deleterious(0.04) possibly_damaging(0.773) TCGA-EE-A2MS-06 2 198436869 198436869 C T RFTN2 Missense_Mutation p.E457K 0.33 deleterious(0.02) benign(0.318) TCGA-EE-A2MS-06 2 198950925 198950925 G A PLCL1 Missense_Mutation p.R895Q 0.56 tolerated(0.07) possibly_damaging(0.537) TCGA-EE-A2MS-06 2 201485379 201485379 G A AOX1 Missense_Mutation p.G571S 0.29 tolerated(0.38) benign(0.002) TCGA-EE-A2MS-06 2 201862171 201862171 G A FAM126B Missense_Mutation p.S208F 0.41 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 2 20232983 20232983 G A LAPTM4A Missense_Mutation p.P229S 0.29 deleterious(0.04) unknown(0) TCGA-EE-A2MS-06 2 202545639 202545639 G A MPP4 Missense_Mutation p.A284V 0.33 tolerated(0.13) benign(0.021) TCGA-EE-A2MS-06 2 202603418 202603418 A C ALS2 Missense_Mutation p.F798V 0.36 deleterious(0.01) probably_damaging(0.929) TCGA-EE-A2MS-06 2 202619390 202619390 G A ALS2 Silent p.S492S 0.45 TCGA-EE-A2MS-06 2 202900514 202900514 C T FZD7 Missense_Mutation p.H382Y 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 203817287 203817287 C T CARF Silent p.I104I 0.34 TCGA-EE-A2MS-06 2 204231653 204231653 C T ABI2 Silent p.S57S 0.44 TCGA-EE-A2MS-06 2 204820433 204820433 C T ICOS Missense_Mutation p.P45S 0.45 tolerated(0.13) benign(0.199) TCGA-EE-A2MS-06 2 206166390 206166390 G A PARD3B Silent p.R803R 0.57 TCGA-EE-A2MS-06 2 207460812 207460812 C T ADAM23 Missense_Mutation p.T762I 0.41 tolerated(0.41) benign(0.091) TCGA-EE-A2MS-06 2 207619767 207619767 G A MDH1B Silent p.A292A 0.36 TCGA-EE-A2MS-06 2 21225520 21225520 C T APOB Silent p.R4258R 0.24 TCGA-EE-A2MS-06 2 21227961 21227961 C T APOB Missense_Mutation p.E3927K 0.26 benign(0) TCGA-EE-A2MS-06 2 21230565 21230565 G A APOB Missense_Mutation p.R3059C 0.24 benign(0.083) TCGA-EE-A2MS-06 2 21231534 21231534 G A APOB Missense_Mutation p.L2736F 0.55 possibly_damaging(0.741) TCGA-EE-A2MS-06 2 214878736 214878736 C T SPAG16 Missense_Mutation p.P488S 0.41 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2MS-06 2 215820086 215820086 C T ABCA12 Splice_Site p.X2078_splice 0.19 TCGA-EE-A2MS-06 2 216293030 216293030 G A FN1 Silent p.S239S 0.37 TCGA-EE-A2MS-06 2 218925031 218925031 A C CXCR2P1 RNA 0.34 TCGA-EE-A2MS-06 2 218940305 218940305 G A RUFY4 Missense_Mutation p.G384R 0.45 tolerated(0.35) benign(0.004) TCGA-EE-A2MS-06 2 219000455 219000455 C T CXCR2 Missense_Mutation p.P311S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 219617591 219617591 C T TTLL4 Missense_Mutation p.P1028S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 219695493 219695493 C T PRKAG3 Missense_Mutation p.G69R 0.36 tolerated_low_confidence(0.25) benign(0.006) TCGA-EE-A2MS-06 2 219870935 219870935 G A CCDC108 Missense_Mutation p.P1577L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 219892725 219892725 C T CCDC108 Missense_Mutation p.E620K 0.40 tolerated(0.06) benign(0.373) TCGA-EE-A2MS-06 2 220037846 220037846 G A CNPPD1 Missense_Mutation p.S232F 0.28 deleterious(0) possibly_damaging(0.878) TCGA-EE-A2MS-06 2 220239721 220239721 G A DNPEP Silent p.T421T 0.40 TCGA-EE-A2MS-06 2 220370413 220370413 C G GMPPA Intron 0.50 TCGA-EE-A2MS-06 2 220379729 220379729 C T ASIC4 Missense_Mutation p.R222W 0.43 tolerated(0.19) benign(0.019) TCGA-EE-A2MS-06 2 220396617 220396617 G A ASIC4 Silent p.R367R 0.41 TCGA-EE-A2MS-06 2 220402443 220402443 G A ASIC4 Silent p.Q605Q 0.62 TCGA-EE-A2MS-06 2 220504210 220504210 C T SLC4A3 Silent p.I1037I 0.42 TCGA-EE-A2MS-06 2 222428683 222428683 G A EPHA4 Silent p.V197V 0.28 TCGA-EE-A2MS-06 2 227920826 227920826 G A COL4A4 Missense_Mutation p.P851S 0.33 unknown(0) TCGA-EE-A2MS-06 2 227954607 227954607 C T COL4A4 Missense_Mutation p.G479E 0.46 benign(0.129) TCGA-EE-A2MS-06 2 228128651 228128651 G A COL4A3 Missense_Mutation p.G436R 0.28 probably_damaging(1) TCGA-EE-A2MS-06 2 228128652 228128652 G A COL4A3 Missense_Mutation p.G436E 0.28 probably_damaging(1) TCGA-EE-A2MS-06 2 228476116 228476116 C T C2orf83 Silent p.G149G 0.36 TCGA-EE-A2MS-06 2 228881214 228881214 G A SPHKAP Silent p.L1452L 0.40 TCGA-EE-A2MS-06 2 228882320 228882320 C T SPHKAP Missense_Mutation p.E1084K 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 228882609 228882609 C T SPHKAP Silent p.G987G 0.34 TCGA-EE-A2MS-06 2 228884867 228884867 C T SPHKAP Missense_Mutation p.E235K 0.40 deleterious(0) probably_damaging(0.937) TCGA-EE-A2MS-06 2 230661346 230661346 G A TRIP12 Silent p.I1184I 0.40 TCGA-EE-A2MS-06 2 231380111 231380111 T C SP100 Intron 0.26 TCGA-EE-A2MS-06 2 232263084 232263084 G A B3GNT7 Silent p.K218K 0.39 TCGA-EE-A2MS-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.43 TCGA-EE-A2MS-06 2 233757668 233757668 G A NGEF Missense_Mutation p.S361F 0.37 deleterious(0.03) possibly_damaging(0.78) TCGA-EE-A2MS-06 2 234402154 234402154 G A USP40 Missense_Mutation p.P956L 0.23 tolerated(0.7) benign(0.005) TCGA-EE-A2MS-06 2 234545659 234545659 C T UGT1A10 Missense_Mutation p.P164L 0.32 deleterious(0) probably_damaging(0.914) TCGA-EE-A2MS-06 2 234581260 234581260 C T UGT1A9 Missense_Mutation p.A227V 0.38 deleterious(0.05) benign(0.011) TCGA-EE-A2MS-06 2 234621899 234621899 G A UGT1A5 Missense_Mutation p.E88K 0.38 tolerated(0.11) benign(0.103) TCGA-EE-A2MS-06 2 234627556 234627556 G A UGT1A4 Silent p.K30K 0.50 TCGA-EE-A2MS-06 2 234845985 234845985 C T TRPM8 Intron 0.49 TCGA-EE-A2MS-06 2 234871952 234871952 C T TRPM8 Silent p.P560P 0.43 TCGA-EE-A2MS-06 2 234894424 234894424 C T TRPM8 Missense_Mutation p.P952S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 2 237103554 237103554 C T ASB18 Silent p.Q454Q 0.45 TCGA-EE-A2MS-06 2 237233422 237233422 C T IQCA1 Nonsense_Mutation p.W793* 0.50 TCGA-EE-A2MS-06 2 237489121 237489121 C T ACKR3 Missense_Mutation p.L5F 0.57 deleterious_low_confidence(0.03) benign(0.19) TCGA-EE-A2MS-06 2 241492400 241492400 G A ANKMY1 Silent p.F48F 0.29 TCGA-EE-A2MS-06 2 242062230 242062230 G A PASK Nonsense_Mutation p.Q997* 0.43 TCGA-EE-A2MS-06 2 242065899 242065899 G A PASK Nonsense_Mutation p.R811* 0.31 TCGA-EE-A2MS-06 2 24930670 24930670 G A NCOA1 Silent p.K777K 0.32 TCGA-EE-A2MS-06 2 25141686 25141686 G A ADCY3 Silent p.F57F 0.30 TCGA-EE-A2MS-06 2 25469513 25469513 G T DNMT3A Missense_Mutation p.P419T 0.22 tolerated(0.36) possibly_damaging(0.474) TCGA-EE-A2MS-06 2 25965968 25965968 G A ASXL2 Missense_Mutation p.L1080F 0.27 tolerated(0.2) benign(0.008) TCGA-EE-A2MS-06 2 26022340 26022340 G A ASXL2 Missense_Mutation p.S106L 0.28 deleterious(0.01) possibly_damaging(0.788) TCGA-EE-A2MS-06 2 26204327 26204327 G A KIF3C Nonsense_Mutation p.R154* 0.56 TCGA-EE-A2MS-06 2 26672863 26672863 G A DRC1 Splice_Site p.X504_splice 0.46 TCGA-EE-A2MS-06 2 26676345 26676345 C T DRC1 Missense_Mutation p.S616F 0.62 deleterious(0) possibly_damaging(0.622) TCGA-EE-A2MS-06 2 27373113 27373113 G A TCF23 Silent p.L115L 0.36 TCGA-EE-A2MS-06 2 27456983 27456983 C T CAD Silent p.T1169T 0.31 TCGA-EE-A2MS-06 2 27461301 27461301 C T CAD Silent p.I1621I 0.25 TCGA-EE-A2MS-06 2 27500708 27500708 G A DNAJC5G Missense_Mutation p.G67E 0.24 tolerated(0.16) probably_damaging(0.986) TCGA-EE-A2MS-06 2 27532709 27532709 G A MPV17 3'UTR 0.69 TCGA-EE-A2MS-06 2 27722064 27722064 G A GCKR Missense_Mutation p.E162K 0.29 tolerated(0.52) benign(0.013) TCGA-EE-A2MS-06 2 27730125 27730125 C T GCKR Missense_Mutation p.L364F 0.57 deleterious(0.02) probably_damaging(0.954) TCGA-EE-A2MS-06 2 27741759 27741759 G A GCKR Silent p.R509R 0.31 TCGA-EE-A2MS-06 2 27745389 27745389 C T GCKR Silent p.P545P 0.24 TCGA-EE-A2MS-06 2 27802602 27802602 G A C2orf16 Missense_Mutation p.D1055N 0.28 tolerated(0.1) possibly_damaging(0.512) TCGA-EE-A2MS-06 2 27824259 27824259 C T ZNF512 Missense_Mutation p.R207C 0.24 deleterious(0) possibly_damaging(0.53) TCGA-EE-A2MS-06 2 28004589 28004589 C T RBKS Missense_Mutation p.E288K 0.52 tolerated(0.31) benign(0.365) TCGA-EE-A2MS-06 2 28761176 28761176 C T PLB1 Intron 0.49 TCGA-EE-A2MS-06 2 28828728 28828728 C T PLB1 Silent p.L990L 0.26 TCGA-EE-A2MS-06 2 29006834 29006834 C T PPP1CB Silent p.V194V 0.49 TCGA-EE-A2MS-06 2 29221030 29221030 C T FAM179A Missense_Mutation p.A17V 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 29295648 29295648 C T C2orf71 Missense_Mutation p.E494K 0.57 tolerated(0.07) probably_damaging(0.928) TCGA-EE-A2MS-06 2 29754793 29754793 G A ALK Missense_Mutation p.P381L 0.58 tolerated(0.05) benign(0.355) TCGA-EE-A2MS-06 2 29917858 29917858 G A ALK Silent p.F270F 0.23 TCGA-EE-A2MS-06 2 31572598 31572598 T C XDH Missense_Mutation p.S975G 0.30 deleterious(0.02) benign(0.155) TCGA-EE-A2MS-06 2 32445597 32445597 C T SLC30A6 Missense_Mutation p.L441F 0.28 tolerated_low_confidence(0.08) benign(0.105) TCGA-EE-A2MS-06 2 33623611 33623611 G A LTBP1 Silent p.%3D 0.56 TCGA-EE-A2MS-06 2 36986174 36986174 C T VIT Missense_Mutation p.P158S 0.24 tolerated(0.23) benign(0.02) TCGA-EE-A2MS-06 2 37035815 37035815 C T VIT Silent p.L530L 0.25 TCGA-EE-A2MS-06 2 37276937 37276937 G A HEATR5B Missense_Mutation p.S852F 0.26 tolerated(0.35) benign(0.046) TCGA-EE-A2MS-06 2 37458795 37458795 G A CEBPZ 5'UTR 0.28 TCGA-EE-A2MS-06 2 38298036 38298036 C T CYP1B1 Silent p.L487L 0.33 TCGA-EE-A2MS-06 2 38903126 38903126 T A GALM Missense_Mutation p.F88Y 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MS-06 2 39009027 39009027 C T GEMIN6 Missense_Mutation p.S166F 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.534) TCGA-EE-A2MS-06 2 39505596 39505596 C A MAP4K3 Silent p.G582G 0.20 TCGA-EE-A2MS-06 2 42544633 42544633 G A EML4 Missense_Mutation p.G708E 0.27 deleterious(0.01) benign(0.383) TCGA-EE-A2MS-06 2 43015689 43015689 G A HAAO Missense_Mutation p.H47Y 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 43926862 43926862 C T PLEKHH2 Silent p.T255T 0.53 TCGA-EE-A2MS-06 2 43947864 43947864 T A PLEKHH2 Nonsense_Mutation p.Y839* 0.57 TCGA-EE-A2MS-06 2 44201417 44201417 A T LRPPRC Missense_Mutation p.L343I 0.28 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MS-06 2 46411915 46411915 C G PRKCE Silent p.T703T 0.27 TCGA-EE-A2MS-06 2 46411916 46411916 C T PRKCE Missense_Mutation p.R704W 0.28 deleterious(0) possibly_damaging(0.816) TCGA-EE-A2MS-06 2 46739724 46739724 C T ATP6V1E2 Missense_Mutation p.G43R 0.57 deleterious(0.03) possibly_damaging(0.895) TCGA-EE-A2MS-06 2 46987053 46987053 C T SOCS5 Missense_Mutation p.P462S 0.61 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A2MS-06 2 47221609 47221609 C T TTC7A Silent p.F319F 0.30 TCGA-EE-A2MS-06 2 47288087 47288087 G A TTC7A Missense_Mutation p.G778S 0.22 tolerated(0.57) benign(0.191) TCGA-EE-A2MS-06 2 48807965 48807965 C T STON1-GTF2A1L Missense_Mutation p.P65S 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A2MS-06 2 48807966 48807966 C T STON1-GTF2A1L Missense_Mutation p.P65L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 48873624 48873624 G A STON1-GTF2A1L Missense_Mutation p.V845M 0.26 deleterious(0.01) benign(0.231) TCGA-EE-A2MS-06 2 54042070 54042070 G - ERLEC1 Frame_Shift_Del 0.29 TCGA-EE-A2MS-06 2 54483008 54483008 G A TSPYL6 Missense_Mutation p.P94L 0.24 tolerated(0.14) benign(0.039) TCGA-EE-A2MS-06 2 55566617 55566617 G A CCDC88A Nonsense_Mutation p.Q501* 0.52 TCGA-EE-A2MS-06 2 65540704 65540704 G A SPRED2 Silent p.P396P 0.25 TCGA-EE-A2MS-06 2 69049724 69049724 A G ARHGAP25 Missense_Mutation p.R485G 0.25 tolerated(0.07) benign(0.185) TCGA-EE-A2MS-06 2 69053182 69053182 G A ARHGAP25 Silent p.K599K 0.22 TCGA-EE-A2MS-06 2 69093648 69093648 G A BMP10 Silent p.F130F 0.52 TCGA-EE-A2MS-06 2 69650762 69650762 G A NFU1 Missense_Mutation p.T85I 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 70187890 70187890 G A ASPRV1 Missense_Mutation p.R311C 0.24 deleterious(0) probably_damaging(0.939) TCGA-EE-A2MS-06 2 70931543 70931543 C T ADD2 Missense_Mutation p.G78R 0.35 deleterious(0) probably_damaging(0.921) TCGA-EE-A2MS-06 2 71576164 71576164 C T ZNF638 Missense_Mutation p.P27L 0.15 deleterious(0.02) possibly_damaging(0.77) TCGA-EE-A2MS-06 2 71766337 71766337 C T DYSF Missense_Mutation p.S515L 0.21 deleterious(0) probably_damaging(0.964) TCGA-EE-A2MS-06 2 71797810 71797810 G A DYSF Missense_Mutation p.R1056Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 71825763 71825763 C T DYSF Missense_Mutation p.P1215L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 2 71886148 71886148 G A DYSF Silent p.K1632K 0.22 TCGA-EE-A2MS-06 2 73315384 73315384 C T RAB11FIP5 Silent p.R454R 0.53 TCGA-EE-A2MS-06 2 74173931 74173931 C T DGUOK Missense_Mutation p.S114F 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 2 74273719 74273719 C T TET3 Silent p.N90N 0.19 TCGA-EE-A2MS-06 2 74274974 74274974 C T TET3 Missense_Mutation p.P509S 0.38 tolerated(0.23) benign(0.013) TCGA-EE-A2MS-06 2 74699807 74699807 G A MRPL53 5'UTR 0.56 TCGA-EE-A2MS-06 2 74842118 74842118 C T M1AP Silent p.R133R 0.25 TCGA-EE-A2MS-06 2 74842119 74842119 C T M1AP Missense_Mutation p.R133K 0.26 deleterious(0.01) benign(0.012) TCGA-EE-A2MS-06 2 74867441 74867441 G A M1AP 5'UTR 0.60 TCGA-EE-A2MS-06 2 75425727 75425727 G A TACR1 Missense_Mutation p.P112S 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 2 79384342 79384342 C T REG3A 3'UTR 0.30 TCGA-EE-A2MS-06 2 85577173 85577173 G A RETSAT Silent p.F263F 0.50 TCGA-EE-A2MS-06 2 85982046 85982046 C A ATOH8 Missense_Mutation p.T245N 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 2 86276287 86276287 G A POLR1A Missense_Mutation p.P824L 0.29 tolerated(0.29) benign(0.001) TCGA-EE-A2MS-06 2 86400788 86400788 G A IMMT Missense_Mutation p.P136S 0.57 tolerated(0.06) benign(0.007) TCGA-EE-A2MS-06 2 8871204 8871204 G A KIDINS220 Silent p.S1654S 0.41 TCGA-EE-A2MS-06 2 90153772 90153772 C T IGKV3D-15 Missense_Mutation p.L10F 0.41 tolerated(0.22) probably_damaging(1) TCGA-EE-A2MS-06 2 95601090 95601090 C T AC097374.2 RNA 0.48 TCGA-EE-A2MS-06 2 96950252 96950252 G A SNRNP200 Silent p.T1412T 0.49 TCGA-EE-A2MS-06 2 98392351 98392351 G A TMEM131 Silent p.T1425T 0.18 TCGA-EE-A2MS-06 2 98846523 98846523 G A VWA3B Missense_Mutation p.E721K 0.60 tolerated(0.11) benign(0.147) TCGA-EE-A2MS-06 2 99012539 99012539 G A CNGA3 Silent p.R302R 0.60 TCGA-EE-A2MS-06 2 99155368 99155368 C T INPP4A Silent p.V198V 0.27 TCGA-EE-A2MS-06 3 100275807 100275807 T C TMEM45A Missense_Mutation p.F132L 0.54 deleterious(0.03) possibly_damaging(0.889) TCGA-EE-A2MS-06 3 100348442 100348442 G A GPR128 Missense_Mutation p.G39E 0.21 tolerated(0.23) benign(0.039) TCGA-EE-A2MS-06 3 100467433 100467433 C T TFG 3'UTR 0.50 TCGA-EE-A2MS-06 3 101062792 101062792 G A SENP7 Missense_Mutation p.S615F 0.50 deleterious(0.02) possibly_damaging(0.781) TCGA-EE-A2MS-06 3 101284252 101284252 G A TRMT10C Missense_Mutation p.M209I 0.54 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A2MS-06 3 101446231 101446231 C T CEP97 Missense_Mutation p.S64L 0.24 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 3 10362624 10362624 G A SEC13 Intron 0.29 TCGA-EE-A2MS-06 3 105377768 105377768 G A CBLB 3'UTR 0.19 TCGA-EE-A2MS-06 3 108107886 108107886 G A MYH15 Silent p.I1842I 0.26 TCGA-EE-A2MS-06 3 108409671 108409671 C T DZIP3 Missense_Mutation p.P1185L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 108724056 108724056 A G MORC1 Missense_Mutation p.I625T 0.23 tolerated(1) benign(0) TCGA-EE-A2MS-06 3 109023324 109023324 C T DPPA2 Silent p.K284K 0.21 TCGA-EE-A2MS-06 3 10953849 10953849 T A SLC6A11 Missense_Mutation p.S322R 0.24 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MS-06 3 111296348 111296348 G A CD96 Splice_Site p.X182_splice 0.26 TCGA-EE-A2MS-06 3 111297971 111297971 G A CD96 Missense_Mutation p.R230K 0.58 tolerated(0.67) benign(0.001) TCGA-EE-A2MS-06 3 113375101 113375101 C T KIAA2018 Missense_Mutation p.D1810N 0.57 possibly_damaging(0.579) TCGA-EE-A2MS-06 3 119301087 119301087 G A ADPRH Nonsense_Mutation p.W24* 0.20 TCGA-EE-A2MS-06 3 120360535 120360535 G A HGD Silent p.V260V 0.21 TCGA-EE-A2MS-06 3 120673881 120673881 G A STXBP5L Missense_Mutation p.R95Q 0.27 deleterious(0.01) benign(0.009) TCGA-EE-A2MS-06 3 121126293 121126293 G A STXBP5L Missense_Mutation p.E955K 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 3 121208787 121208787 A C POLQ Missense_Mutation p.N997K 0.25 tolerated_low_confidence(0.24) benign(0.003) TCGA-EE-A2MS-06 3 121341031 121341031 C T FBXO40 Missense_Mutation p.S252F 0.26 deleterious(0.02) benign(0.008) TCGA-EE-A2MS-06 3 121437283 121437283 G A GOLGB1 Silent p.V279V 0.41 TCGA-EE-A2MS-06 3 121615323 121615323 C T SLC15A2 Missense_Mutation p.S59F 0.31 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MS-06 3 121720279 121720279 G A ILDR1 Silent p.I174I 0.45 TCGA-EE-A2MS-06 3 121973151 121973151 C T CASR Missense_Mutation p.P39S 0.31 tolerated(0.33) probably_damaging(0.962) TCGA-EE-A2MS-06 3 121980966 121980966 G A CASR Missense_Mutation p.E362K 0.19 tolerated(0.47) benign(0.111) TCGA-EE-A2MS-06 3 121981248 121981248 G A CASR Missense_Mutation p.E456K 0.29 tolerated(0.16) probably_damaging(0.951) TCGA-EE-A2MS-06 3 122003000 122003000 C T CASR Silent p.F743F 0.29 TCGA-EE-A2MS-06 3 122269585 122269585 G A PARP9 Missense_Mutation p.S426F 0.31 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2MS-06 3 123419176 123419176 G A MYLK Silent p.L1047L 0.52 TCGA-EE-A2MS-06 3 124351444 124351444 G A KALRN Missense_Mutation p.G88E 0.26 deleterious(0.01) benign(0.318) TCGA-EE-A2MS-06 3 125828895 125828895 C T ALDH1L1 Missense_Mutation p.G757R 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 3 126220104 126220104 C T UROC1 Missense_Mutation p.E368K 0.55 tolerated(0.2) possibly_damaging(0.483) TCGA-EE-A2MS-06 3 126224595 126224595 C T UROC1 Silent p.G254G 0.27 TCGA-EE-A2MS-06 3 126226630 126226630 G A UROC1 Missense_Mutation p.S186F 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 3 126229580 126229580 G A UROC1 Missense_Mutation p.P62S 0.27 tolerated(0.05) benign(0.018) TCGA-EE-A2MS-06 3 128205204 128205204 C T GATA2 Silent p.L79L 0.29 TCGA-EE-A2MS-06 3 128205212 128205212 C T GATA2 Splice_Site p.X77_splice 0.17 TCGA-EE-A2MS-06 3 128627937 128627937 C T ACAD9 Missense_Mutation p.L494F 0.43 deleterious(0.02) benign(0.147) TCGA-EE-A2MS-06 3 130188179 130188179 C T COL6A5 Missense_Mutation p.S2444F 0.76 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 3 130345328 130345328 G A COL6A6 Splice_Site p.X1627_splice 0.51 TCGA-EE-A2MS-06 3 132071617 132071617 C T ACPP Silent p.L306L 0.42 TCGA-EE-A2MS-06 3 133663997 133663997 G A SLCO2A1 Missense_Mutation p.S468F 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 3 134323202 134323202 A G KY Missense_Mutation p.L402S 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 3 13612990 13612990 G T FBLN2 Missense_Mutation p.D379Y 0.30 deleterious(0.04) possibly_damaging(0.709) TCGA-EE-A2MS-06 3 1367635 1367635 G A CNTN6 Silent p.E361E 0.29 TCGA-EE-A2MS-06 3 137717731 137717731 G A CLDN18 Silent p.Q7Q 0.23 TCGA-EE-A2MS-06 3 137781670 137781670 G A DZIP1L Silent p.V764V 0.24 TCGA-EE-A2MS-06 3 137790621 137790621 G A DZIP1L Silent p.V493V 0.32 TCGA-EE-A2MS-06 3 137991881 137991881 C T ARMC8 Missense_Mutation p.R504W 0.31 deleterious(0) possibly_damaging(0.685) TCGA-EE-A2MS-06 3 139297746 139297746 C T NMNAT3 Silent p.Q50Q 0.28 TCGA-EE-A2MS-06 3 141497610 141497610 C T GRK7 Missense_Mutation p.P162S 0.26 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MS-06 3 141497611 141497611 C T GRK7 Missense_Mutation p.P162L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 14154357 14154357 G T CHCHD4 3'UTR 0.47 TCGA-EE-A2MS-06 3 142217497 142217497 G A ATR Missense_Mutation p.L1834F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 142430402 142430402 T C PLS1 Silent p.N563N 0.25 TCGA-EE-A2MS-06 3 142561813 142561813 G A PCOLCE2 Missense_Mutation p.P176S 0.32 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MS-06 3 142985652 142985652 T C SLC9A9 Silent p.K610K 0.45 TCGA-EE-A2MS-06 3 142985654 142985654 T A SLC9A9 Nonsense_Mutation p.K610* 0.45 TCGA-EE-A2MS-06 3 143297500 143297500 G A SLC9A9 Missense_Mutation p.S274F 0.27 deleterious(0) probably_damaging(0.912) TCGA-EE-A2MS-06 3 147131198 147131198 G A ZIC1 Missense_Mutation p.E402K 0.50 deleterious(0.05) benign(0.236) TCGA-EE-A2MS-06 3 148930247 148930247 C T CP Missense_Mutation p.E129K 0.21 deleterious(0.01) possibly_damaging(0.639) TCGA-EE-A2MS-06 3 149260244 149260244 C T WWTR1 Missense_Mutation p.G217R 0.18 deleterious(0.02) possibly_damaging(0.621) TCGA-EE-A2MS-06 3 149375082 149375082 G A WWTR1 Silent p.A4A 0.59 TCGA-EE-A2MS-06 3 150340893 150340893 G A SELT Silent p.K104K 0.35 TCGA-EE-A2MS-06 3 15093987 15093987 C T MRPS25 Silent p.G161G 0.22 TCGA-EE-A2MS-06 3 151094947 151094947 G A MED12L Missense_Mutation p.G1398R 0.25 tolerated(0.11) benign(0.168) TCGA-EE-A2MS-06 3 151094948 151094948 G A MED12L Missense_Mutation p.G1398E 0.24 tolerated(0.34) benign(0.01) TCGA-EE-A2MS-06 3 15124054 15124054 G A ZFYVE20 Silent p.P220P 0.58 TCGA-EE-A2MS-06 3 15124055 15124055 G A ZFYVE20 Missense_Mutation p.P220L 0.56 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A2MS-06 3 154886309 154886309 C T MME Silent p.L603L 0.52 TCGA-EE-A2MS-06 3 155199919 155199919 G A PLCH1 Missense_Mutation p.S1307F 0.32 tolerated_low_confidence(0.08) benign(0.005) TCGA-EE-A2MS-06 3 155211982 155211982 G A PLCH1 Silent p.F698F 0.20 TCGA-EE-A2MS-06 3 15720984 15720984 C A ANKRD28 Missense_Mutation p.V796L 0.34 tolerated(0.22) benign(0.428) TCGA-EE-A2MS-06 3 158363443 158363443 C T GFM1 Missense_Mutation p.S36F 0.30 tolerated(0.64) benign(0.035) TCGA-EE-A2MS-06 3 161147246 161147246 C T RP11-3P17.5 Intron 0.26 TCGA-EE-A2MS-06 3 161214732 161214732 C T OTOL1 Missense_Mutation p.P46L 0.59 tolerated(0.69) unknown(0) TCGA-EE-A2MS-06 3 16237312 16237312 C T GALNT15 Silent p.V195V 0.28 TCGA-EE-A2MS-06 3 16254145 16254145 G A GALNT15 Missense_Mutation p.D423N 0.31 tolerated(0.5) benign(0.004) TCGA-EE-A2MS-06 3 16261495 16261495 C T GALNT15 Missense_Mutation p.P535S 0.54 tolerated(0.08) probably_damaging(0.977) TCGA-EE-A2MS-06 3 164776809 164776809 C T SI Missense_Mutation p.G447E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 164792420 164792420 G C SI Missense_Mutation p.R52G 0.40 tolerated(0.43) benign(0.011) TCGA-EE-A2MS-06 3 164906936 164906936 C T SLITRK3 Silent p.E561E 0.23 TCGA-EE-A2MS-06 3 167322099 167322099 G A WDR49 Silent p.L31L 0.21 TCGA-EE-A2MS-06 3 168813034 168813034 C G MECOM Splice_Site p.X827_splice 0.15 TCGA-EE-A2MS-06 3 169525424 169525424 C T LRRC34 Missense_Mutation p.D111N 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A2MS-06 3 169539830 169539830 C T LRRIQ4 Missense_Mutation p.P41S 0.29 tolerated(0.33) possibly_damaging(0.831) TCGA-EE-A2MS-06 3 170198732 170198732 C T SLC7A14 Missense_Mutation p.E447K 0.48 tolerated(0.26) benign(0.079) TCGA-EE-A2MS-06 3 17056316 17056316 C T PLCL2 Silent p.V851V 0.32 TCGA-EE-A2MS-06 3 170879094 170879094 C T TNIK Silent p.E327E 0.32 TCGA-EE-A2MS-06 3 171452666 171452666 G A PLD1 Missense_Mutation p.L177F 0.21 tolerated(0.17) benign(0.002) TCGA-EE-A2MS-06 3 175521029 175521029 C T NAALADL2 3'UTR 0.30 TCGA-EE-A2MS-06 3 183209655 183209655 G A KLHL6 3'UTR 0.33 TCGA-EE-A2MS-06 3 183476713 183476713 C T YEATS2 Missense_Mutation p.P539L 0.32 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-EE-A2MS-06 3 183823756 183823756 C T HTR3E Silent p.I334I 0.28 TCGA-EE-A2MS-06 3 184035215 184035215 C T EIF4G1 Missense_Mutation p.S92F 0.29 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MS-06 3 184035526 184035526 C T EIF4G1 Missense_Mutation p.P123S 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2MS-06 3 184075882 184075882 G A CLCN2 Silent p.G161G 0.28 TCGA-EE-A2MS-06 3 184091368 184091368 C T THPO Silent p.E77E 0.16 TCGA-EE-A2MS-06 3 184295720 184295720 C T EPHB3 Silent p.P558P 0.31 TCGA-EE-A2MS-06 3 185190873 185190873 G A MAP3K13 Missense_Mutation p.R585Q 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MS-06 3 185316753 185316753 C T SENP2 Missense_Mutation p.S100L 0.53 deleterious(0) benign(0.159) TCGA-EE-A2MS-06 3 185337194 185337194 T C SENP2 Silent p.G450G 0.53 TCGA-EE-A2MS-06 3 186383882 186383882 C T HRG Missense_Mutation p.P21L 0.35 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2MS-06 3 191075887 191075887 C T CCDC50 Silent p.A71A 0.52 TCGA-EE-A2MS-06 3 193042758 193042758 C T ATP13A5 Nonsense_Mutation p.W523* 0.34 TCGA-EE-A2MS-06 3 194169326 194169326 G A ATP13A3 Missense_Mutation p.P337L 0.29 deleterious(0.04) benign(0.043) TCGA-EE-A2MS-06 3 195063202 195063202 G A ACAP2 Nonsense_Mutation p.Q176* 0.21 TCGA-EE-A2MS-06 3 19959780 19959780 C T EFHB Missense_Mutation p.G374E 0.51 tolerated(0.19) benign(0.066) TCGA-EE-A2MS-06 3 23960057 23960057 C T RPL15 Missense_Mutation p.S100F 0.50 tolerated(0.07) possibly_damaging(0.617) TCGA-EE-A2MS-06 3 25781208 25781208 G A NGLY1 Silent p.N247N 0.47 TCGA-EE-A2MS-06 3 25781209 25781209 T A NGLY1 Missense_Mutation p.N247I 0.47 tolerated(0.06) benign(0.023) TCGA-EE-A2MS-06 3 27393991 27393991 G A NEK10 Missense_Mutation p.R33W 0.52 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A2MS-06 3 27436188 27436188 G A SLC4A7 Missense_Mutation p.P971S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 2928832 2928832 G A CNTN4 Silent p.E288E 0.19 TCGA-EE-A2MS-06 3 30732960 30732960 C T TGFBR2 Missense_Mutation p.P550S 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A2MS-06 3 3139581 3139581 C T IL5RA Missense_Mutation p.D228N 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MS-06 3 31712380 31712380 C T OSBPL10 Missense_Mutation p.G608R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 32932742 32932742 C T TRIM71 Silent p.F682F 0.56 TCGA-EE-A2MS-06 3 36759552 36759552 G A DCLK3 Nonsense_Mutation p.Q568* 0.47 TCGA-EE-A2MS-06 3 36759553 36759553 G A DCLK3 Silent p.I567I 0.48 TCGA-EE-A2MS-06 3 36780166 36780166 C T DCLK3 5'UTR 0.53 TCGA-EE-A2MS-06 3 36873271 36873271 C T TRANK1 Missense_Mutation p.M2557I 0.26 tolerated(0.27) benign(0.001) TCGA-EE-A2MS-06 3 36873994 36873994 C T TRANK1 Silent p.R2316R 0.45 TCGA-EE-A2MS-06 3 36875372 36875372 G A TRANK1 Missense_Mutation p.S1857F 0.29 tolerated(0.1) possibly_damaging(0.541) TCGA-EE-A2MS-06 3 37369101 37369101 C T GOLGA4 Silent p.S1930S 0.58 TCGA-EE-A2MS-06 3 37555332 37555332 C T ITGA9 Missense_Mutation p.P326S 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 3 38048127 38048127 G T VILL Missense_Mutation p.R798L 0.09 tolerated(0.5) possibly_damaging(0.82) TCGA-EE-A2MS-06 3 38169315 38169315 C T ACAA1 Silent p.R196R 0.21 TCGA-EE-A2MS-06 3 38348823 38348823 C T SLC22A14 Missense_Mutation p.L199F 0.56 tolerated(0.09) benign(0.202) TCGA-EE-A2MS-06 3 38350536 38350536 C T SLC22A14 Silent p.I289I 0.32 TCGA-EE-A2MS-06 3 38607912 38607912 G A SCN5A Silent p.F1276F 0.28 TCGA-EE-A2MS-06 3 38620875 38620875 C T SCN5A Missense_Mutation p.D1114N 0.62 tolerated(0.2) benign(0.002) TCGA-EE-A2MS-06 3 38620979 38620979 G A SCN5A Missense_Mutation p.S1079F 0.42 deleterious(0.05) possibly_damaging(0.771) TCGA-EE-A2MS-06 3 38674777 38674777 G A SCN5A Missense_Mutation p.R8W 0.38 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-EE-A2MS-06 3 38770042 38770042 C T SCN10A Silent p.G877G 0.63 TCGA-EE-A2MS-06 3 38968311 38968311 G A SCN11A Silent p.S200S 0.18 TCGA-EE-A2MS-06 3 39227323 39227323 C T XIRP1 Missense_Mutation p.G1205E 0.32 tolerated(0.23) benign(0.028) TCGA-EE-A2MS-06 3 39307214 39307214 G A CX3CR1 Missense_Mutation p.P295S 0.59 tolerated(0.81) benign(0.015) TCGA-EE-A2MS-06 3 42242542 42242542 C T TRAK1 Silent p.L475L 0.20 TCGA-EE-A2MS-06 3 42264742 42264742 C T TRAK1 Missense_Mutation p.S792F 0.58 tolerated(0.28) possibly_damaging(0.789) TCGA-EE-A2MS-06 3 43618494 43618494 G A ANO10 Silent p.P284P 0.34 TCGA-EE-A2MS-06 3 44408953 44408953 C T TCAIM Nonsense_Mutation p.R109* 0.35 TCGA-EE-A2MS-06 3 44488420 44488420 G A ZNF445 Nonsense_Mutation p.Q915* 0.58 TCGA-EE-A2MS-06 3 44541327 44541327 G A ZNF852 Silent p.L314L 0.29 TCGA-EE-A2MS-06 3 44598439 44598439 C T ZKSCAN7 5'UTR 0.58 TCGA-EE-A2MS-06 3 44763775 44763775 A T ZNF502 Missense_Mutation p.K489M 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 3 45134801 45134801 C T CDCP1 Missense_Mutation p.G532D 0.36 tolerated(1) benign(0.019) TCGA-EE-A2MS-06 3 45152315 45152315 G A CDCP1 Missense_Mutation p.S225F 0.52 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MS-06 3 45812825 45812825 C T SLC6A20 Silent p.Q273Q 0.23 TCGA-EE-A2MS-06 3 46729610 46729610 G A ALS2CL Missense_Mutation p.R94C 0.53 tolerated(0.18) possibly_damaging(0.582) TCGA-EE-A2MS-06 3 46758961 46758961 G A PRSS50 Silent p.F91F 0.26 TCGA-EE-A2MS-06 3 46904814 46904814 G A MYL3 Missense_Mutation p.P23S 0.26 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A2MS-06 3 47305837 47305837 C A KIF9 Missense_Mutation p.G307V 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MS-06 3 47884677 47884677 G - DHX30 Frame_Shift_Del p.V291Lfs*22 0.22 TCGA-EE-A2MS-06 3 48451759 48451759 G A PLXNB1 Missense_Mutation p.P1851S 0.25 tolerated(0.08) possibly_damaging(0.678) TCGA-EE-A2MS-06 3 48604154 48604154 G A COL7A1 Missense_Mutation p.P2748L 0.29 probably_damaging(0.977) TCGA-EE-A2MS-06 3 48627128 48627128 C T COL7A1 Missense_Mutation p.V692I 0.61 unknown(0) TCGA-EE-A2MS-06 3 48696450 48696450 G A CELSR3 Silent p.L1206L 0.23 TCGA-EE-A2MS-06 3 48719196 48719196 G A NCKIPSD Missense_Mutation p.P206S 0.75 tolerated(0.27) benign(0.255) TCGA-EE-A2MS-06 3 49114439 49114439 G A QRICH1 Silent p.S4S 0.18 TCGA-EE-A2MS-06 3 49168257 49168257 C A LAMB2 Missense_Mutation p.G318C 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 3 49200241 49200241 G A CCDC71 Silent p.V467V 0.25 TCGA-EE-A2MS-06 3 49449976 49449976 C T TCTA Silent p.F39F 0.45 TCGA-EE-A2MS-06 3 49694051 49694051 C T BSN Silent p.F2354F 0.55 TCGA-EE-A2MS-06 3 50312345 50312345 G A LSMEM2 5'Flank 0.47 TCGA-EE-A2MS-06 3 50334761 50334761 G A NAT6 Missense_Mutation p.P67L 0.15 tolerated(0.07) benign(0.004) TCGA-EE-A2MS-06 3 51297629 51297629 C T DOCK3 Silent p.L743L 0.67 TCGA-EE-A2MS-06 3 51297686 51297686 G A DOCK3 Missense_Mutation p.E762K 0.31 deleterious(0.03) possibly_damaging(0.64) TCGA-EE-A2MS-06 3 52003300 52003300 G A ABHD14B 3'UTR 0.50 TCGA-EE-A2MS-06 3 52003559 52003559 C T ABHD14B Silent p.L172L 0.27 TCGA-EE-A2MS-06 3 52328373 52328373 C T GLYCTK 3'Flank 0.32 TCGA-EE-A2MS-06 3 52384040 52384040 C T DNAH1 Silent p.I854I 0.14 TCGA-EE-A2MS-06 3 52394378 52394378 C T DNAH1 Silent p.F1541F 0.50 TCGA-EE-A2MS-06 3 52542337 52542337 C T STAB1 Missense_Mutation p.P733S 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A2MS-06 3 52620570 52620570 G A PBRM1 Silent p.V1061V 0.29 TCGA-EE-A2MS-06 3 52816259 52816259 C T ITIH1 Silent p.S302S 0.40 TCGA-EE-A2MS-06 3 52821000 52821000 C T ITIH1 Silent p.S591S 0.24 TCGA-EE-A2MS-06 3 52858519 52858519 G A ITIH4 Silent p.I313I 0.56 TCGA-EE-A2MS-06 3 53003186 53003186 G A SFMBT1 5'UTR 0.52 TCGA-EE-A2MS-06 3 53757543 53757543 C T CACNA1D Silent p.F603F 0.23 TCGA-EE-A2MS-06 3 54604011 54604011 C T CACNA2D3 Silent p.D256D 0.26 TCGA-EE-A2MS-06 3 54604065 54604065 C T CACNA2D3 Silent p.I274I 0.54 TCGA-EE-A2MS-06 3 54958747 54958747 G A LRTM1 Missense_Mutation p.S168F 0.23 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MS-06 3 54958748 54958748 A T LRTM1 Missense_Mutation p.S168T 0.25 deleterious(0.05) benign(0.422) TCGA-EE-A2MS-06 3 55733504 55733504 C T ERC2 Missense_Mutation p.D917N 0.25 tolerated(0.08) possibly_damaging(0.479) TCGA-EE-A2MS-06 3 56330159 56330159 C T ERC2 Missense_Mutation p.S321N 0.25 tolerated(0.11) benign(0.047) TCGA-EE-A2MS-06 3 56789060 56789060 G A ARHGEF3 Silent p.F140F 0.26 TCGA-EE-A2MS-06 3 57302551 57302551 T G ASB14 3'UTR 0.64 TCGA-EE-A2MS-06 3 58183700 58183700 G A DNASE1L3 Silent p.F184F 0.33 TCGA-EE-A2MS-06 3 58196577 58196577 C T DNASE1L3 Silent p.L19L 0.31 TCGA-EE-A2MS-06 3 58256704 58256707 GGCA AGC ABHD6 Frame_Shift_Del p.G146Sfs*57 0.31 TCGA-EE-A2MS-06 3 65346846 65346846 G A MAGI1 Intron 0.47 TCGA-EE-A2MS-06 3 65365004 65365004 C T MAGI1 Missense_Mutation p.G976E 0.25 tolerated(0.12) probably_damaging(0.972) TCGA-EE-A2MS-06 3 65439006 65439006 C T MAGI1 Silent p.T323T 0.30 TCGA-EE-A2MS-06 3 69053543 69053543 G A EOGT Silent p.S202S 0.56 TCGA-EE-A2MS-06 3 69168514 69168514 A G LMOD3 Missense_Mutation p.M331T 0.23 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MS-06 3 73432573 73432573 T C PDZRN3 Silent p.T1048T 0.22 TCGA-EE-A2MS-06 3 7620192 7620192 G A GRM7 Silent p.K533K 0.31 TCGA-EE-A2MS-06 3 7728080 7728080 C T GRM7 Intron 0.29 TCGA-EE-A2MS-06 3 88205906 88205906 C T C3orf38 3'UTR 0.50 TCGA-EE-A2MS-06 3 9055474 9055474 G A SRGAP3 Silent p.T622T 0.51 TCGA-EE-A2MS-06 3 9106152 9106152 C T SRGAP3 Missense_Mutation p.M200I 0.31 tolerated(0.4) benign(0.001) TCGA-EE-A2MS-06 3 9543856 9543856 C T LHFPL4 3'UTR 0.50 TCGA-EE-A2MS-06 3 9543857 9543857 T A LHFPL4 3'UTR 0.50 TCGA-EE-A2MS-06 3 96706726 96706726 G A EPHA6 Missense_Mutation p.E335K 0.22 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2MS-06 3 97311555 97311555 G A EPHA6 Missense_Mutation p.G829E 0.32 tolerated_low_confidence(0.14) benign(0.319) TCGA-EE-A2MS-06 3 97711711 97711711 G A GABRR3 3'Flank 0.25 TCGA-EE-A2MS-06 3 97806465 97806465 C T OR5AC2 Missense_Mutation p.S150L 0.23 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A2MS-06 3 97806560 97806560 G A OR5AC2 Missense_Mutation p.E182K 0.22 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MS-06 3 98002019 98002019 G A OR5H2 Missense_Mutation p.M96I 0.54 tolerated(0.2) benign(0.001) TCGA-EE-A2MS-06 3 98002309 98002309 C T OR5H2 Missense_Mutation p.S193F 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 3 98110187 98110187 G A OR5K3 Missense_Mutation p.M226I 0.14 tolerated(0.15) benign(0.009) TCGA-EE-A2MS-06 3 99567805 99567805 C T FILIP1L Silent p.K905K 0.62 TCGA-EE-A2MS-06 3 9959648 9959648 C T IL17RC Missense_Mutation p.P128S 0.64 tolerated(0.14) benign(0.194) TCGA-EE-A2MS-06 3 9959649 9959649 C T IL17RC Missense_Mutation p.P128L 0.62 tolerated(0.13) benign(0.032) TCGA-EE-A2MS-06 4 100063856 100063856 G A ADH4 Missense_Mutation p.P32S 0.59 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MS-06 4 10447216 10447216 G A ZNF518B Missense_Mutation p.S246F 0.40 deleterious(0.04) possibly_damaging(0.459) TCGA-EE-A2MS-06 4 109675807 109675807 C T ETNPPL Missense_Mutation p.G157E 0.65 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A2MS-06 4 109745366 109745366 C T COL25A1 Silent p.R603R 0.68 TCGA-EE-A2MS-06 4 109745367 109745367 C T COL25A1 Missense_Mutation p.R603Q 0.70 tolerated(0.35) benign(0.255) TCGA-EE-A2MS-06 4 110223081 110223081 G A COL25A1 Missense_Mutation p.P32L 0.78 tolerated(0.16) unknown(0) TCGA-EE-A2MS-06 4 110791254 110791254 G A LRIT3 Missense_Mutation p.R450K 0.51 tolerated(0.82) benign(0.007) TCGA-EE-A2MS-06 4 119204249 119204249 C T PRSS12 Missense_Mutation p.R686K 0.35 tolerated(0.26) benign(0.012) TCGA-EE-A2MS-06 4 120241921 120241921 G A FABP2 Silent p.F48F 0.51 TCGA-EE-A2MS-06 4 120419785 120419785 C T PDE5A Missense_Mutation p.G867R 0.35 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A2MS-06 4 121958055 121958055 C T NDNF Silent p.R357R 0.38 TCGA-EE-A2MS-06 4 121966872 121966872 G A NDNF Missense_Mutation p.H41Y 0.33 tolerated(0.48) benign(0.093) TCGA-EE-A2MS-06 4 122075770 122075770 C T TNIP3 Missense_Mutation p.G220E 0.36 tolerated(1) benign(0) TCGA-EE-A2MS-06 4 122756341 122756341 G A BBS7 Missense_Mutation p.P490L 0.47 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 4 122854187 122854187 C T TRPC3 Missense_Mutation p.G76R 0.43 tolerated_low_confidence(0.45) benign(0.001) TCGA-EE-A2MS-06 4 122854228 122854228 G A TRPC3 Intron 0.47 TCGA-EE-A2MS-06 4 122854230 122854230 A T TRPC3 Intron 0.50 TCGA-EE-A2MS-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.43 probably_damaging(0.999) TCGA-EE-A2MS-06 4 123534028 123534028 C T IL21 Missense_Mutation p.R139K 0.35 tolerated(0.14) benign(0.273) TCGA-EE-A2MS-06 4 126240276 126240276 G A FAT4 Missense_Mutation p.E904K 0.32 probably_damaging(0.999) TCGA-EE-A2MS-06 4 126389779 126389779 G A FAT4 Silent p.T4004T 0.28 TCGA-EE-A2MS-06 4 126411466 126411466 G A FAT4 Missense_Mutation p.E4497K 0.28 benign(0.007) TCGA-EE-A2MS-06 4 128651718 128651718 G A SLC25A31 Silent p.A6A 0.20 TCGA-EE-A2MS-06 4 128722309 128722309 C T HSPA4L Missense_Mutation p.T149I 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 4 138453263 138453263 C T PCDH18 5'UTR 0.25 TCGA-EE-A2MS-06 4 139153492 139153492 A C SLC7A11 Missense_Mutation p.I150S 0.59 deleterious(0) possibly_damaging(0.551) TCGA-EE-A2MS-06 4 139163171 139163171 C T SLC7A11 Missense_Mutation p.G18E 0.29 tolerated(0.09) benign(0.169) TCGA-EE-A2MS-06 4 140811507 140811507 G A MAML3 Silent p.P361P 0.18 TCGA-EE-A2MS-06 4 140811508 140811508 G A MAML3 Missense_Mutation p.P361L 0.19 possibly_damaging(0.543) TCGA-EE-A2MS-06 4 146686280 146686280 C T ZNF827 Silent p.T1030T 0.20 TCGA-EE-A2MS-06 4 148407109 148407109 C T EDNRA Silent p.I92I 0.47 TCGA-EE-A2MS-06 4 151023715 151023715 C T DCLK2 Silent p.I169I 0.66 TCGA-EE-A2MS-06 4 151271219 151271219 G A LRBA Silent p.A2440A 0.51 TCGA-EE-A2MS-06 4 153809445 153809445 C T ARFIP1 Silent p.L318L 0.25 TCGA-EE-A2MS-06 4 153897073 153897073 C T FHDC1 Missense_Mutation p.P877L 0.36 deleterious(0.01) benign(0.367) TCGA-EE-A2MS-06 4 154649461 154649461 A - RNF175 Frame_Shift_Del p.L100Yfs*43 0.41 TCGA-EE-A2MS-06 4 154649477 154649477 A T RNF175 Missense_Mutation p.Y95N 0.57 tolerated(0.05) possibly_damaging(0.873) TCGA-EE-A2MS-06 4 154702787 154702787 G A SFRP2 Missense_Mutation p.S235L 0.25 tolerated(0.36) benign(0.007) TCGA-EE-A2MS-06 4 155256132 155256132 G A DCHS2 Silent p.F368F 0.23 TCGA-EE-A2MS-06 4 155507767 155507767 C T FGA Missense_Mutation p.G272R 0.20 tolerated(0.15) benign(0.061) TCGA-EE-A2MS-06 4 155720611 155720611 C T RBM46 Missense_Mutation p.P433S 0.30 tolerated(0.12) benign(0.003) TCGA-EE-A2MS-06 4 156651255 156651255 G A GUCY1A3 Missense_Mutation p.E649K 0.45 deleterious(0.03) benign(0.171) TCGA-EE-A2MS-06 4 156784766 156784766 G A ASIC5 Missense_Mutation p.R61C 0.35 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MS-06 4 156858553 156858553 G A CTSO Missense_Mutation p.S212F 0.34 tolerated(0.12) benign(0.012) TCGA-EE-A2MS-06 4 158057999 158057999 C T GLRB Missense_Mutation p.P191S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 4 159529156 159529156 C T RXFP1 Missense_Mutation p.S166F 0.16 deleterious(0) possibly_damaging(0.695) TCGA-EE-A2MS-06 4 164271428 164271428 G A NPY5R Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.968) TCGA-EE-A2MS-06 4 164271429 164271429 G T NPY5R Missense_Mutation p.D2Y 0.30 deleterious(0) possibly_damaging(0.65) TCGA-EE-A2MS-06 4 164271932 164271932 C T NPY5R Silent p.A169A 0.23 TCGA-EE-A2MS-06 4 164272238 164272238 C T NPY5R Silent p.L271L 0.65 TCGA-EE-A2MS-06 4 164272803 164272803 G A NPY5R 3'UTR 0.48 TCGA-EE-A2MS-06 4 165890720 165890720 C T TRIM61 Silent p.E145E 0.61 TCGA-EE-A2MS-06 4 16590354 16590354 C T LDB2 Silent p.P170P 0.40 TCGA-EE-A2MS-06 4 165961360 165961360 G A TRIM60 Missense_Mutation p.D46N 0.26 tolerated(0.08) possibly_damaging(0.811) TCGA-EE-A2MS-06 4 166924680 166924680 G A TLL1 Missense_Mutation p.R257Q 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 4 166976255 166976255 G A TLL1 Missense_Mutation p.D518N 0.47 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MS-06 4 167021925 167021925 C T TLL1 Missense_Mutation p.S980L 0.53 deleterious(0.02) benign(0.172) TCGA-EE-A2MS-06 4 169013774 169013774 C T ANXA10 5'UTR 0.41 TCGA-EE-A2MS-06 4 169812165 169812165 G A PALLD Missense_Mutation p.R686Q 0.51 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MS-06 4 170017731 170017731 C T SH3RF1 Missense_Mutation p.G869D 0.59 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 4 175898965 175898965 G A ADAM29 Silent p.V763V 0.58 TCGA-EE-A2MS-06 4 1803418 1803418 C T FGFR3 Silent p.V229V 0.27 TCGA-EE-A2MS-06 4 183675719 183675719 C T TENM3 Missense_Mutation p.T1400I 0.57 deleterious(0.01) benign(0.003) TCGA-EE-A2MS-06 4 184166646 184166646 C T WWC2 Missense_Mutation p.S227F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 4 186329116 186329116 A G UFSP2 Silent p.G365G 0.20 TCGA-EE-A2MS-06 4 186544548 186544548 C T SORBS2 Missense_Mutation p.E775K 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 4 189064937 189064937 C T TRIML1 Intron 0.59 TCGA-EE-A2MS-06 4 189068478 189068478 G T TRIML1 Silent p.G453G 0.33 TCGA-EE-A2MS-06 4 190947577 190947577 C T FRG2 Missense_Mutation p.R98K 0.49 deleterious(0.03) possibly_damaging(0.718) TCGA-EE-A2MS-06 4 22389418 22389418 A - GPR125 Frame_Shift_Del p.S1294Afs*40 0.36 TCGA-EE-A2MS-06 4 22414874 22414874 A G GPR125 Silent p.H721H 0.31 TCGA-EE-A2MS-06 4 2306454 2306454 G A ZFYVE28 Missense_Mutation p.S538L 0.23 deleterious_low_confidence(0.02) benign(0.029) TCGA-EE-A2MS-06 4 27019467 27019467 C G STIM2 Missense_Mutation p.R550G 0.43 tolerated_low_confidence(0.26) benign(0.127) TCGA-EE-A2MS-06 4 3319347 3319347 C T RGS12 Missense_Mutation p.P484S 0.39 tolerated(0.24) benign(0.002) TCGA-EE-A2MS-06 4 3319348 3319348 C T RGS12 Missense_Mutation p.P484L 0.39 tolerated(0.18) benign(0.006) TCGA-EE-A2MS-06 4 3319756 3319756 G A RGS12 Missense_Mutation p.R620Q 0.34 tolerated(0.25) benign(0.018) TCGA-EE-A2MS-06 4 3451185 3451185 C T HGFAC 3'UTR 0.50 TCGA-EE-A2MS-06 4 36075412 36075412 C T ARAP2 Missense_Mutation p.E1548K 0.48 tolerated(0.4) benign(0.045) TCGA-EE-A2MS-06 4 38995437 38995437 C T TMEM156 Silent p.S180S 0.37 TCGA-EE-A2MS-06 4 40098995 40098995 C T N4BP2 Missense_Mutation p.P12L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 4 40351431 40351431 G A CHRNA9 Missense_Mutation p.G300S 0.45 deleterious(0) probably_damaging(0.929) TCGA-EE-A2MS-06 4 40440485 40440485 G A RBM47 Silent p.L142L 0.38 TCGA-EE-A2MS-06 4 43032468 43032468 C T GRXCR1 Nonsense_Mutation p.R262* 0.44 TCGA-EE-A2MS-06 4 46252554 46252554 G A GABRA2 Missense_Mutation p.P376L 0.28 tolerated(0.08) benign(0.052) TCGA-EE-A2MS-06 4 46252555 46252555 G A GABRA2 Missense_Mutation p.P376S 0.27 tolerated(0.14) benign(0.196) TCGA-EE-A2MS-06 4 48081967 48081967 C T TXK Missense_Mutation p.E379K 0.35 tolerated(0.19) possibly_damaging(0.836) TCGA-EE-A2MS-06 4 48552675 48552675 G T FRYL Silent p.R1523R 0.44 TCGA-EE-A2MS-06 4 48563556 48563556 G A FRYL Missense_Mutation p.S1265F 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 4 48581195 48581195 G A FRYL Missense_Mutation p.P775S 0.16 tolerated(0.72) possibly_damaging(0.867) TCGA-EE-A2MS-06 4 48581196 48581196 A T FRYL Silent p.S774S 0.12 TCGA-EE-A2MS-06 4 54294293 54294293 C T FIP1L1 Missense_Mutation p.P373S 0.61 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MS-06 4 55139855 55139855 C T PDGFRA Missense_Mutation p.L506F 0.40 tolerated(0.52) benign(0.069) TCGA-EE-A2MS-06 4 56448404 56448404 C T PDCL2 Missense_Mutation p.D3N 0.29 tolerated(0.22) probably_damaging(0.998) TCGA-EE-A2MS-06 4 56768600 56768600 C T EXOC1 Missense_Mutation p.R810C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 4 57164435 57164435 C T KIAA1211 Missense_Mutation p.P14S 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 4 57204882 57204882 C T AASDH Missense_Mutation p.G995S 0.47 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 4 6042423 6042423 C T JAKMIP1 Silent p.K706K 0.39 TCGA-EE-A2MS-06 4 6380203 6380203 C T PPP2R2C Missense_Mutation p.E89K 0.33 deleterious(0) probably_damaging(0.959) TCGA-EE-A2MS-06 4 68930472 68930472 C T TMPRSS11F Missense_Mutation p.D316N 0.39 deleterious(0) possibly_damaging(0.514) TCGA-EE-A2MS-06 4 69693259 69693259 G A UGT2B10 Missense_Mutation p.D434N 0.33 tolerated(0.79) benign(0.134) TCGA-EE-A2MS-06 4 69696515 69696515 C T UGT2B10 Missense_Mutation p.T502I 0.38 tolerated(0.34) benign(0.042) TCGA-EE-A2MS-06 4 69816930 69816930 C T UGT2A3 Silent p.G183G 0.42 TCGA-EE-A2MS-06 4 70146930 70146930 G A UGT2B28 Missense_Mutation p.E238K 0.33 tolerated(0.25) benign(0.05) TCGA-EE-A2MS-06 4 70599185 70599185 C T SULT1B1 Nonsense_Mutation p.W181* 0.32 TCGA-EE-A2MS-06 4 70719950 70719950 C T SULT1E1 Nonsense_Mutation p.W118* 0.24 TCGA-EE-A2MS-06 4 70823295 70823295 G A CSN2 Silent p.P124P 0.31 TCGA-EE-A2MS-06 4 70823296 70823296 G A CSN2 Missense_Mutation p.P124L 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A2MS-06 4 71232489 71232489 G A SMR3A Silent p.G61G 0.34 TCGA-EE-A2MS-06 4 71232589 71232589 C T SMR3A Missense_Mutation p.P95S 0.38 tolerated_low_confidence(0.15) unknown(0) TCGA-EE-A2MS-06 4 71275199 71275199 C T PROL1 Missense_Mutation p.P52S 0.44 tolerated_low_confidence(0.96) possibly_damaging(0.803) TCGA-EE-A2MS-06 4 71347503 71347503 A G MUC7 Missense_Mutation p.T348A 0.43 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MS-06 4 71508720 71508720 G A ENAM Missense_Mutation p.R526K 0.53 tolerated(0.31) benign(0.17) TCGA-EE-A2MS-06 4 72635106 72635106 C T GC Missense_Mutation p.E43K 0.40 tolerated(0.08) possibly_damaging(0.495) TCGA-EE-A2MS-06 4 73013235 73013235 C T NPFFR2 Silent p.F425F 0.47 TCGA-EE-A2MS-06 4 73987397 73987397 G A ANKRD17 Missense_Mutation p.A1191V 0.22 possibly_damaging(0.578) TCGA-EE-A2MS-06 4 7436274 7436274 C T PSAPL1 Silent p.V111V 0.47 TCGA-EE-A2MS-06 4 74367531 74367531 G A AFM Silent p.K558K 0.31 TCGA-EE-A2MS-06 4 77292590 77292590 C T CCDC158 Missense_Mutation p.D377N 0.25 tolerated(0.18) probably_damaging(0.991) TCGA-EE-A2MS-06 4 80327831 80327831 C T GK2 Missense_Mutation p.M508I 0.36 deleterious(0.05) benign(0.001) TCGA-EE-A2MS-06 4 81967643 81967643 G A BMP3 Silent p.L356L 0.35 TCGA-EE-A2MS-06 4 83849201 83849201 C T LIN54 3'UTR 0.67 TCGA-EE-A2MS-06 4 84243433 84243433 G A HPSE Silent p.F104F 0.21 TCGA-EE-A2MS-06 4 85617242 85617242 C T WDFY3 Missense_Mutation p.V2928I 0.35 tolerated(0.18) possibly_damaging(0.549) TCGA-EE-A2MS-06 4 8588793 8588793 C T GPR78 Silent p.L265L 0.36 TCGA-EE-A2MS-06 4 860902 860902 G A GAK Missense_Mutation p.S905F 0.47 deleterious(0) possibly_damaging(0.62) TCGA-EE-A2MS-06 4 8609090 8609090 C T CPZ Missense_Mutation p.P389S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 4 86491674 86491674 G A ARHGAP24 Splice_Site 0.33 TCGA-EE-A2MS-06 4 86916612 86916612 C T ARHGAP24 Missense_Mutation p.S602F 0.38 tolerated(0.07) possibly_damaging(0.486) TCGA-EE-A2MS-06 4 86988960 86988960 G A MAPK10 Silent p.L317L 0.32 TCGA-EE-A2MS-06 4 87691040 87691040 C T PTPN13 Silent p.L1541L 0.65 TCGA-EE-A2MS-06 4 96761999 96761999 G A PDHA2 Missense_Mutation p.R233K 0.79 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 4 99300270 99300270 T C RAP1GDS1 Missense_Mutation p.L156S 0.57 deleterious(0.04) benign(0.371) TCGA-EE-A2MS-06 5 101813454 101813454 C T SLCO6A1 Missense_Mutation p.G243E 0.21 deleterious(0) possibly_damaging(0.801) TCGA-EE-A2MS-06 5 102282552 102282552 G A PAM Missense_Mutation p.D180N 0.19 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 5 106717056 106717056 G A EFNA5 Missense_Mutation p.A196V 0.62 tolerated(0.18) possibly_damaging(0.629) TCGA-EE-A2MS-06 5 108672882 108672882 G A PJA2 3'UTR 0.19 TCGA-EE-A2MS-06 5 110459595 110459595 A T WDR36 Silent p.A803A 0.14 TCGA-EE-A2MS-06 5 112419847 112419847 G A MCC Missense_Mutation p.S529L 0.18 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A2MS-06 5 114548115 114548125 ACATTCTCTGA - PGGT1B Frame_Shift_Del p.S370Tfs*17 0.28 TCGA-EE-A2MS-06 5 11732286 11732286 C T CTNND2 Missense_Mutation p.E46K 0.61 deleterious(0) benign(0.269) TCGA-EE-A2MS-06 5 11732344 11732344 C T CTNND2 Silent p.E26E 0.18 TCGA-EE-A2MS-06 5 1214133 1214133 C T SLC6A19 Silent p.S280S 0.08 TCGA-EE-A2MS-06 5 121488171 121488171 G A ZNF474 Silent p.Q162Q 0.33 TCGA-EE-A2MS-06 5 121488633 121488633 G A ZNF474 Silent p.Q316Q 0.78 TCGA-EE-A2MS-06 5 121726833 121726833 G A SNCAIP Missense_Mutation p.E2K 0.78 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 5 1232407 1232407 C T SLC6A18 Silent p.I78I 0.09 TCGA-EE-A2MS-06 5 123983241 123983241 C A ZNF608 Missense_Mutation p.A946S 0.80 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A2MS-06 5 1244835 1244835 C T SLC6A18 Missense_Mutation p.L537F 0.17 tolerated(0.24) benign(0.208) TCGA-EE-A2MS-06 5 126792879 126792879 C T MEGF10 Missense_Mutation p.P1098S 0.39 deleterious(0.01) possibly_damaging(0.478) TCGA-EE-A2MS-06 5 127681179 127681179 G A FBN2 Silent p.V1029V 0.21 TCGA-EE-A2MS-06 5 128956409 128956409 C T ADAMTS19 Missense_Mutation p.S520L 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 5 130762790 130762790 G A CTC-432M15.3 3'UTR 0.79 TCGA-EE-A2MS-06 5 131995466 131995466 C T IL13 Silent p.I93I 0.61 TCGA-EE-A2MS-06 5 134007571 134007571 T C SEC24A Missense_Mutation p.L271S 0.09 tolerated(0.19) benign(0.017) TCGA-EE-A2MS-06 5 134343724 134343724 C A CATSPER3 Silent p.I190I 0.39 TCGA-EE-A2MS-06 5 134785608 134785608 G A TIFAB Silent p.L8L 0.61 TCGA-EE-A2MS-06 5 135207319 135207319 C T SLC25A48 Intron 0.69 TCGA-EE-A2MS-06 5 13737574 13737574 C T DNAH5 Missense_Mutation p.E3748K 0.14 possibly_damaging(0.621) TCGA-EE-A2MS-06 5 137423581 137423581 G A WNT8A Missense_Mutation p.E110K 0.18 tolerated(0.06) possibly_damaging(0.782) TCGA-EE-A2MS-06 5 13766175 13766175 C T DNAH5 Silent p.V3337V 0.18 TCGA-EE-A2MS-06 5 137754678 137754678 G A KDM3B Missense_Mutation p.E1158K 0.65 tolerated(1) benign(0.121) TCGA-EE-A2MS-06 5 13793771 13793771 C T DNAH5 Missense_Mutation p.E2693K 0.66 possibly_damaging(0.621) TCGA-EE-A2MS-06 5 138163391 138163391 C T CTNNA1 Missense_Mutation p.S349L 0.24 deleterious(0) possibly_damaging(0.603) TCGA-EE-A2MS-06 5 13823447 13823447 C T DNAH5 Silent p.L2204L 0.72 TCGA-EE-A2MS-06 5 138253548 138253548 G A CTNNA1 Missense_Mutation p.D503N 0.22 deleterious(0) possibly_damaging(0.88) TCGA-EE-A2MS-06 5 13829760 13829760 G A DNAH5 Silent p.F2101F 0.42 TCGA-EE-A2MS-06 5 13865925 13865925 G A DNAH5 Missense_Mutation p.L1403F 0.68 possibly_damaging(0.849) TCGA-EE-A2MS-06 5 13900349 13900349 C T DNAH5 Missense_Mutation p.R742Q 0.13 possibly_damaging(0.553) TCGA-EE-A2MS-06 5 13901467 13901467 G A DNAH5 Missense_Mutation p.A649V 0.67 benign(0.008) TCGA-EE-A2MS-06 5 13914702 13914702 C T DNAH5 Missense_Mutation p.G416E 0.54 probably_damaging(0.982) TCGA-EE-A2MS-06 5 139722387 139722387 G A HBEGF Silent p.S77S 0.43 TCGA-EE-A2MS-06 5 139743310 139743310 G A SLC4A9 Intron 0.72 TCGA-EE-A2MS-06 5 139751116 139751116 C T SLC4A9 Silent p.T883T 0.16 TCGA-EE-A2MS-06 5 139905617 139905617 C T ANKHD1 Missense_Mutation p.T1510I 0.69 possibly_damaging(0.507) TCGA-EE-A2MS-06 5 140182667 140182667 G A PCDHA3 Missense_Mutation p.G629R 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A2MS-06 5 140202248 140202248 T G PCDHA5 Silent p.S296S 0.22 TCGA-EE-A2MS-06 5 140202306 140202306 G A PCDHA5 Missense_Mutation p.E316K 0.16 tolerated_low_confidence(0.33) benign(0.207) TCGA-EE-A2MS-06 5 140203063 140203063 G A PCDHA5 Missense_Mutation p.R568Q 0.18 tolerated_low_confidence(0.45) benign(0.008) TCGA-EE-A2MS-06 5 140207914 140207914 C A PCDHA6 Missense_Mutation p.Q80K 0.11 deleterious_low_confidence(0.03) benign(0.288) TCGA-EE-A2MS-06 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.46 tolerated_low_confidence(0.09) benign(0.294) TCGA-EE-A2MS-06 5 140228404 140228404 G A PCDHA9 Silent p.V108V 0.13 TCGA-EE-A2MS-06 5 140230469 140230469 G A PCDHA9 Missense_Mutation p.G797R 0.62 tolerated_low_confidence(0.12) benign(0.08) TCGA-EE-A2MS-06 5 140235949 140235949 G A PCDHA10 Missense_Mutation p.E106K 0.13 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A2MS-06 5 140250642 140250642 G A PCDHA11 Missense_Mutation p.D652N 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A2MS-06 5 140308886 140308886 G A PCDHAC1 Silent p.G803G 0.78 TCGA-EE-A2MS-06 5 140347257 140347257 C T PCDHAC2 Silent p.D302D 0.17 TCGA-EE-A2MS-06 5 140362134 140362134 C T PCDHAC1 Missense_Mutation p.S856F 0.15 deleterious(0.02) benign(0.396) TCGA-EE-A2MS-06 5 140474497 140474497 G A PCDHB2 Silent p.T41T 0.15 TCGA-EE-A2MS-06 5 140476136 140476136 G A PCDHB2 Missense_Mutation p.V588M 0.47 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A2MS-06 5 140481302 140481302 C T PCDHB3 Missense_Mutation p.P357S 0.20 deleterious_low_confidence(0.04) benign(0.175) TCGA-EE-A2MS-06 5 140515442 140515442 C T PCDHB5 Silent p.I142I 0.36 TCGA-EE-A2MS-06 5 140537689 140537689 T A PCDHB17 3'UTR 0.66 TCGA-EE-A2MS-06 5 140553298 140553298 C T PCDHB7 Silent p.I294I 0.15 TCGA-EE-A2MS-06 5 140553440 140553440 G A PCDHB7 Missense_Mutation p.D342N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.482) TCGA-EE-A2MS-06 5 140559563 140559563 G A PCDHB8 Missense_Mutation p.E650K 0.59 deleterious_low_confidence(0.01) benign(0.219) TCGA-EE-A2MS-06 5 140580830 140580830 G A PCDHB11 Missense_Mutation p.D495N 0.40 deleterious_low_confidence(0.04) benign(0.33) TCGA-EE-A2MS-06 5 140590025 140590025 C T PCDHB12 Missense_Mutation p.L516F 0.44 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A2MS-06 5 140590527 140590527 C T PCDHB12 Missense_Mutation p.A683V 0.60 tolerated_low_confidence(0.06) benign(0.081) TCGA-EE-A2MS-06 5 140604586 140604586 G A PCDHB14 Silent p.L503L 0.12 TCGA-EE-A2MS-06 5 140616170 140616170 C T PCDHB18 RNA 0.15 TCGA-EE-A2MS-06 5 140616219 140616219 C T PCDHB18 RNA 0.16 TCGA-EE-A2MS-06 5 140625680 140625680 C T PCDHB15 Silent p.F178F 0.19 TCGA-EE-A2MS-06 5 140718610 140718610 G A PCDHGA2 Nonsense_Mutation p.W24* 0.36 TCGA-EE-A2MS-06 5 140718902 140718902 G A PCDHGA2 Missense_Mutation p.E122K 0.46 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A2MS-06 5 140732088 140732088 C T PCDHGB1 Missense_Mutation p.S754F 0.23 deleterious(0) possibly_damaging(0.907) TCGA-EE-A2MS-06 5 140740132 140740132 G A PCDHGB2 Missense_Mutation p.E144K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 5 140745253 140745253 C T PCDHGA5 Silent p.F452F 0.16 TCGA-EE-A2MS-06 5 140745589 140745589 C T PCDHGA5 Silent p.Y564Y 0.22 TCGA-EE-A2MS-06 5 140764449 140764449 C T PCDHGA7 Silent p.T661T 0.20 TCGA-EE-A2MS-06 5 140772572 140772572 C T PCDHGA8 Silent p.V64V 0.69 TCGA-EE-A2MS-06 5 140783812 140783812 C T PCDHGA9 Silent p.P431P 0.81 TCGA-EE-A2MS-06 5 140784766 140784766 C T PCDHGA9 Silent p.F749F 0.63 TCGA-EE-A2MS-06 5 140788813 140788813 C T PCDHGB6 Silent p.I348I 0.13 TCGA-EE-A2MS-06 5 140812225 140812225 G A PCDHGA12 Silent p.L633L 0.19 TCGA-EE-A2MS-06 5 140812288 140812288 C T PCDHGA12 Silent p.L654L 0.17 TCGA-EE-A2MS-06 5 140869593 140869593 C T PCDHGC5 Silent p.L262L 0.51 TCGA-EE-A2MS-06 5 140870620 140870620 C T PCDHGC5 Missense_Mutation p.L605F 0.67 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 5 141051852 141051852 C T ARAP3 Missense_Mutation p.G468R 0.16 deleterious(0.01) benign(0.323) TCGA-EE-A2MS-06 5 141324995 141324995 C T PCDH12 Missense_Mutation p.G1169E 0.50 tolerated_low_confidence(0.18) unknown(0) TCGA-EE-A2MS-06 5 141334755 141334755 C T PCDH12 Missense_Mutation p.G888R 0.40 tolerated(0.54) benign(0.004) TCGA-EE-A2MS-06 5 1443098 1443098 G A SLC6A3 Missense_Mutation p.S72F 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 5 145719773 145719773 G A POU4F3 Silent p.E261E 0.17 TCGA-EE-A2MS-06 5 14601342 14601342 G A FAM105A Missense_Mutation p.R82K 0.10 tolerated(0.13) possibly_damaging(0.694) TCGA-EE-A2MS-06 5 147505148 147505148 C T SPINK5 Missense_Mutation p.S934F 0.19 tolerated(0.08) possibly_damaging(0.861) TCGA-EE-A2MS-06 5 147900490 147900490 G A HTR4 Intron 0.42 TCGA-EE-A2MS-06 5 148408018 148408018 C T SH3TC2 Missense_Mutation p.S426N 0.10 deleterious(0.03) benign(0.027) TCGA-EE-A2MS-06 5 148743657 148743657 C T PCYOX1L Silent p.F118F 0.42 TCGA-EE-A2MS-06 5 148754100 148754100 G A IL17B Silent p.G125G 0.68 TCGA-EE-A2MS-06 5 149216017 149216017 C T PPARGC1B Missense_Mutation p.H667Y 0.15 tolerated(0.05) probably_damaging(0.92) TCGA-EE-A2MS-06 5 149602733 149602733 G A CAMK2A Missense_Mutation p.H429Y 0.11 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 5 149772349 149772349 C T TCOF1 Missense_Mutation p.S1199F 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 5 149792262 149792262 C T CD74 Missense_Mutation p.M17I 0.16 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MS-06 5 149826385 149826385 G A RPS14 Silent p.L97L 0.12 TCGA-EE-A2MS-06 5 150072586 150072586 G A RBM22 Missense_Mutation p.L335F 0.31 tolerated(0.14) probably_damaging(0.969) TCGA-EE-A2MS-06 5 150275551 150275551 G A ZNF300 Missense_Mutation p.A433V 0.62 tolerated(0.17) probably_damaging(0.999) TCGA-EE-A2MS-06 5 150867587 150867587 C T SLC36A1 Silent p.S401S 0.68 TCGA-EE-A2MS-06 5 150901330 150901330 G A FAT2 Silent p.T3608T 0.23 TCGA-EE-A2MS-06 5 150901331 150901331 G T FAT2 Missense_Mutation p.T3608N 0.22 probably_damaging(0.933) TCGA-EE-A2MS-06 5 150946879 150946879 C T FAT2 Nonsense_Mutation p.W538* 0.75 TCGA-EE-A2MS-06 5 153029980 153029980 G A GRIA1 Missense_Mutation p.G194E 0.19 tolerated(0.14) benign(0.062) TCGA-EE-A2MS-06 5 153372500 153372500 G A FAM114A2 3'UTR 0.62 TCGA-EE-A2MS-06 5 153433112 153433112 C T MFAP3 Nonsense_Mutation p.Q310* 0.19 TCGA-EE-A2MS-06 5 154307058 154307058 G A GEMIN5 Missense_Mutation p.L323F 0.50 deleterious(0.03) possibly_damaging(0.821) TCGA-EE-A2MS-06 5 154311045 154311045 G A GEMIN5 Nonsense_Mutation p.R252* 0.10 TCGA-EE-A2MS-06 5 154394966 154394966 C T KIF4B Missense_Mutation p.A516V 0.45 deleterious(0.04) benign(0.162) TCGA-EE-A2MS-06 5 156347490 156347490 G A TIMD4 Missense_Mutation p.S346L 0.14 tolerated(1) benign(0) TCGA-EE-A2MS-06 5 156376728 156376728 G A TIMD4 Missense_Mutation p.L232F 0.13 tolerated(0.42) probably_damaging(0.942) TCGA-EE-A2MS-06 5 156381595 156381595 G A TIMD4 Silent p.T77T 0.16 TCGA-EE-A2MS-06 5 156381596 156381596 G A TIMD4 Missense_Mutation p.T77I 0.17 tolerated(0.67) benign(0.229) TCGA-EE-A2MS-06 5 156671372 156671372 G A ITK Missense_Mutation p.D445N 0.18 tolerated(1) benign(0.007) TCGA-EE-A2MS-06 5 156810362 156810362 C T CYFIP2 Missense_Mutation p.P1042S 0.12 tolerated(0.18) benign(0.043) TCGA-EE-A2MS-06 5 156907838 156907838 C T ADAM19 3'UTR 0.75 TCGA-EE-A2MS-06 5 156946919 156946919 G A ADAM19 Silent p.F176F 0.10 TCGA-EE-A2MS-06 5 157078476 157078476 G A SOX30 Missense_Mutation p.P204L 0.19 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MS-06 5 157161590 157161590 C T AC026407.1 Missense_Mutation p.E46K 0.22 unknown(0) TCGA-EE-A2MS-06 5 15928222 15928222 C T FBXL7 Silent p.L117L 0.67 TCGA-EE-A2MS-06 5 161116303 161116303 C T GABRA6 Missense_Mutation p.P164S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 5 162918273 162918273 T C HMMR 3'UTR 0.30 TCGA-EE-A2MS-06 5 16680099 16680099 G A MYO10 Missense_Mutation p.A1500V 0.27 tolerated(0.59) probably_damaging(0.985) TCGA-EE-A2MS-06 5 167420138 167420138 C T TENM2 Silent p.S379S 0.11 TCGA-EE-A2MS-06 5 167553802 167553802 G A TENM2 Silent p.G751G 0.30 TCGA-EE-A2MS-06 5 167812347 167812347 C T WWC1 Silent p.L121L 0.11 TCGA-EE-A2MS-06 5 167920929 167920929 C T RARS Missense_Mutation p.P134S 0.18 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 5 169081436 169081436 C T DOCK2 Missense_Mutation p.P25S 0.54 tolerated(0.47) benign(0.003) TCGA-EE-A2MS-06 5 169096332 169096332 G A DOCK2 Silent p.Q56Q 0.64 TCGA-EE-A2MS-06 5 169506038 169506038 C T DOCK2 Missense_Mutation p.S1685F 0.40 deleterious(0.02) benign(0.049) TCGA-EE-A2MS-06 5 169509902 169509902 G A DOCK2 3'UTR 0.62 TCGA-EE-A2MS-06 5 169535234 169535234 G A FOXI1 Silent p.L252L 0.41 TCGA-EE-A2MS-06 5 169535329 169535329 C T FOXI1 Missense_Mutation p.S284F 0.20 deleterious(0.04) benign(0.429) TCGA-EE-A2MS-06 5 169677741 169677741 C T LCP2 Missense_Mutation p.G491E 0.20 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MS-06 5 170667972 170667972 G A RANBP17 Silent p.Q821Q 0.12 TCGA-EE-A2MS-06 5 170818768 170818768 C T NPM1 Missense_Mutation p.S106L 0.67 deleterious(0.03) benign(0.289) TCGA-EE-A2MS-06 5 172750263 172750263 C T STC2 Silent p.V155V 0.23 TCGA-EE-A2MS-06 5 173372032 173372032 C T CPEB4 Missense_Mutation p.L449F 0.30 deleterious(0) benign(0.27) TCGA-EE-A2MS-06 5 176003066 176003066 C T CDHR2 Silent p.L358L 0.67 TCGA-EE-A2MS-06 5 176011703 176011703 C T CDHR2 Silent p.T807T 0.14 TCGA-EE-A2MS-06 5 176011704 176011704 C T CDHR2 Silent p.L808L 0.14 TCGA-EE-A2MS-06 5 176019740 176019740 G A CDHR2 Missense_Mutation p.D1251N 0.81 deleterious(0.02) benign(0.295) TCGA-EE-A2MS-06 5 176025676 176025676 G A GPRIN1 Missense_Mutation p.P387L 0.12 tolerated(0.3) benign(0.053) TCGA-EE-A2MS-06 5 176026791 176026791 C T GPRIN1 Silent p.K15K 0.12 TCGA-EE-A2MS-06 5 176306753 176306753 C T UNC5A Missense_Mutation p.P799S 0.16 deleterious(0) possibly_damaging(0.78) TCGA-EE-A2MS-06 5 176306754 176306754 C A UNC5A Missense_Mutation p.P799H 0.16 deleterious(0) benign(0.223) TCGA-EE-A2MS-06 5 176520541 176520541 C T FGFR4 Silent p.F462F 0.62 TCGA-EE-A2MS-06 5 176813035 176813035 G A SLC34A1 Missense_Mutation p.G53S 0.17 tolerated_low_confidence(0.8) benign(0.02) TCGA-EE-A2MS-06 5 176821091 176821091 G A SLC34A1 Missense_Mutation p.G357R 0.15 tolerated(0.35) benign(0.057) TCGA-EE-A2MS-06 5 176931115 176931115 G A DOK3 Missense_Mutation p.R454W 0.79 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 5 176939113 176939113 G A DDX41 Silent p.S572S 0.69 TCGA-EE-A2MS-06 5 177546597 177546597 C T N4BP3 Missense_Mutation p.P5S 0.72 tolerated(0.22) benign(0.002) TCGA-EE-A2MS-06 5 177675236 177675236 C T COL23A1 Missense_Mutation p.G390E 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 5 178552028 178552028 C T ADAMTS2 Silent p.R968R 0.17 TCGA-EE-A2MS-06 5 178553072 178553072 C T ADAMTS2 Missense_Mutation p.G893S 0.11 tolerated(1) benign(0.004) TCGA-EE-A2MS-06 5 180047291 180047291 G A FLT4 Silent p.I808I 0.67 TCGA-EE-A2MS-06 5 180048671 180048671 C T FLT4 Missense_Mutation p.A631T 0.56 tolerated(0.52) benign(0.012) TCGA-EE-A2MS-06 5 180048672 180048672 C T FLT4 Silent p.G630G 0.58 TCGA-EE-A2MS-06 5 180338607 180338607 G A BTNL8 Silent p.Q222Q 0.19 TCGA-EE-A2MS-06 5 180377239 180377239 C T BTNL8 Missense_Mutation p.P400S 0.65 deleterious(0.02) probably_damaging(0.924) TCGA-EE-A2MS-06 5 180432420 180432420 G A BTNL3 Missense_Mutation p.E317K 0.13 tolerated(0.8) benign(0.006) TCGA-EE-A2MS-06 5 19571736 19571736 A G CDH18 Missense_Mutation p.V402A 0.72 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MS-06 5 19839093 19839093 C T CDH18 Translation_Start_Site p.M1? 0.74 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-EE-A2MS-06 5 23517998 23517998 C T PRDM9 Missense_Mutation p.P104S 0.71 tolerated_low_confidence(0.76) benign(0.013) TCGA-EE-A2MS-06 5 23527689 23527689 C T PRDM9 Missense_Mutation p.P831L 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 5 26903766 26903766 C A CDH9 Missense_Mutation p.G327W 0.15 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MS-06 5 26915831 26915831 C T CDH9 Missense_Mutation p.E144K 0.16 deleterious(0) benign(0.074) TCGA-EE-A2MS-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.65 tolerated(0.31) possibly_damaging(0.72) TCGA-EE-A2MS-06 5 31323113 31323113 G A CDH6 Missense_Mutation p.D691N 0.63 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A2MS-06 5 31526376 31526376 G C DROSHA Missense_Mutation p.P222A 0.16 deleterious_low_confidence(0.01) benign(0.066) TCGA-EE-A2MS-06 5 31526377 31526377 G A DROSHA Silent p.S221S 0.15 TCGA-EE-A2MS-06 5 31526613 31526613 G A DROSHA Missense_Mutation p.P143S 0.26 tolerated_low_confidence(0.15) possibly_damaging(0.857) TCGA-EE-A2MS-06 5 31526876 31526876 G A DROSHA Missense_Mutation p.P55L 0.91 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-EE-A2MS-06 5 34945102 34945102 G A DNAJC21 Missense_Mutation p.E372K 0.68 tolerated(0.08) possibly_damaging(0.627) TCGA-EE-A2MS-06 5 35965835 35965835 G A UGT3A1 Missense_Mutation p.L166F 0.15 tolerated(0.28) probably_damaging(0.984) TCGA-EE-A2MS-06 5 3599525 3599525 C T IRX1 Missense_Mutation p.P155S 0.16 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 5 37201695 37201695 C T C5orf42 Missense_Mutation p.E1169K 0.65 deleterious(0) probably_damaging(0.923) TCGA-EE-A2MS-06 5 38403909 38403909 G A EGFLAM Intron 0.85 TCGA-EE-A2MS-06 5 38523666 38523666 G A LIFR Missense_Mutation p.P139L 0.10 deleterious(0.04) possibly_damaging(0.645) TCGA-EE-A2MS-06 5 38904051 38904051 G A OSMR Nonsense_Mutation p.W353* 0.10 TCGA-EE-A2MS-06 5 38959321 38959321 G A RICTOR Silent p.S718S 0.14 TCGA-EE-A2MS-06 5 39119080 39119080 T A FYB Missense_Mutation p.K776I 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 5 39377034 39377034 G A DAB2 Missense_Mutation p.P619S 0.41 tolerated(0.06) benign(0.176) TCGA-EE-A2MS-06 5 40931206 40931206 C T C7 Missense_Mutation p.P35S 0.18 tolerated(0.39) benign(0.01) TCGA-EE-A2MS-06 5 40981683 40981683 G A C7 3'UTR 0.52 TCGA-EE-A2MS-06 5 41005013 41005013 C T MROH2B Missense_Mutation p.E1292K 0.14 deleterious(0.04) possibly_damaging(0.891) TCGA-EE-A2MS-06 5 41143050 41143050 T C C6 Silent p.Q894Q 0.59 TCGA-EE-A2MS-06 5 41313696 41313696 C T PLCXD3 3'UTR 0.16 TCGA-EE-A2MS-06 5 41382018 41382018 G A PLCXD3 Missense_Mutation p.S241L 0.62 deleterious(0.02) benign(0.075) TCGA-EE-A2MS-06 5 41382115 41382115 C T PLCXD3 Missense_Mutation p.G209R 0.30 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MS-06 5 42719252 42719252 C T GHR Missense_Mutation p.P548L 0.11 deleterious(0) possibly_damaging(0.874) TCGA-EE-A2MS-06 5 45262581 45262581 G A HCN1 Silent p.S705S 0.75 TCGA-EE-A2MS-06 5 45396809 45396809 C T HCN1 Missense_Mutation p.D339N 0.18 tolerated(0.32) benign(0.011) TCGA-EE-A2MS-06 5 50055551 50055551 C T PARP8 Missense_Mutation p.H87Y 0.23 deleterious_low_confidence(0.05) benign(0.001) TCGA-EE-A2MS-06 5 5186172 5186172 C T ADAMTS16 Silent p.P257P 0.15 TCGA-EE-A2MS-06 5 52096729 52096729 C T PELO Silent p.I167I 0.57 TCGA-EE-A2MS-06 5 52374624 52374624 G A ITGA2 Missense_Mutation p.E950K 0.15 tolerated(0.69) probably_damaging(0.994) TCGA-EE-A2MS-06 5 54281313 54281313 G A ESM1 Silent p.L11L 0.11 TCGA-EE-A2MS-06 5 54566508 54566508 G T DHX29 Missense_Mutation p.S964Y 0.15 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 5 54569141 54569141 G T DHX29 Missense_Mutation p.P919T 0.67 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 5 55034816 55034816 G A DDX4 Missense_Mutation p.E9K 0.70 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A2MS-06 5 57751513 57751513 G A PLK2 Missense_Mutation p.P493L 0.47 deleterious(0) possibly_damaging(0.691) TCGA-EE-A2MS-06 5 59983018 59983018 G A DEPDC1B Missense_Mutation p.P29S 0.15 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 5 63256644 63256644 G A HTR1A Silent p.S301S 0.18 TCGA-EE-A2MS-06 5 63256645 63256645 G A HTR1A Missense_Mutation p.S301F 0.17 deleterious(0) benign(0.25) TCGA-EE-A2MS-06 5 63871694 63871694 C T RGS7BP Silent p.S142S 0.14 TCGA-EE-A2MS-06 5 67586659 67586659 C T PIK3R1 Intron 0.14 TCGA-EE-A2MS-06 5 68651550 68651550 G A TAF9 Silent p.F84F 0.16 TCGA-EE-A2MS-06 5 68665386 68665386 G A TAF9 Intron 0.15 TCGA-EE-A2MS-06 5 71490076 71490076 C T MAP1B Silent p.I298I 0.65 TCGA-EE-A2MS-06 5 71519533 71519533 G A MRPS27 Missense_Mutation p.P328S 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MS-06 5 71533937 71533937 G A MRPS27 Silent p.N100N 0.72 TCGA-EE-A2MS-06 5 71631620 71631620 G A PTCD2 Splice_Site p.X183_splice 0.70 TCGA-EE-A2MS-06 5 71739929 71739929 G A ZNF366 Missense_Mutation p.P630L 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-EE-A2MS-06 5 72469221 72469221 G A TMEM174 Missense_Mutation p.G51R 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 5 75581632 75581632 G A SV2C Missense_Mutation p.M358I 0.14 deleterious(0.03) possibly_damaging(0.472) TCGA-EE-A2MS-06 5 76128740 76128740 G A F2RL1 Missense_Mutation p.R103Q 0.65 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MS-06 5 7626297 7626297 C T ADCY2 Silent p.I196I 0.12 TCGA-EE-A2MS-06 5 76646927 76646927 G A PDE8B Missense_Mutation p.G352E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 5 79033165 79033165 C T CMYA5 Silent p.S2859S 0.74 TCGA-EE-A2MS-06 5 79089293 79089293 C T CMYA5 Silent p.S3941S 0.71 TCGA-EE-A2MS-06 5 79730011 79730011 C T ZFYVE16 Silent p.L15L 0.70 TCGA-EE-A2MS-06 5 79855155 79855155 G A ANKRD34B Silent p.S228S 0.10 TCGA-EE-A2MS-06 5 80037355 80037355 C T MSH3 Silent p.I547I 0.14 TCGA-EE-A2MS-06 5 80762802 80762802 C A SSBP2 Missense_Mutation p.G210V 0.62 deleterious(0.03) possibly_damaging(0.71) TCGA-EE-A2MS-06 5 89949562 89949562 G A GPR98 Missense_Mutation p.E1391K 0.83 possibly_damaging(0.881) TCGA-EE-A2MS-06 5 90024648 90024648 T C GPR98 Missense_Mutation p.F3442L 0.87 possibly_damaging(0.483) TCGA-EE-A2MS-06 5 90106148 90106148 G A GPR98 Missense_Mutation p.R5024K 0.70 benign(0.009) TCGA-EE-A2MS-06 5 911963 911963 C T TRIP13 Missense_Mutation p.S291F 0.16 deleterious(0) possibly_damaging(0.489) TCGA-EE-A2MS-06 5 9154728 9154728 G A SEMA5A Silent p.F451F 0.43 TCGA-EE-A2MS-06 5 94818193 94818193 G A TTC37 Missense_Mutation p.S1399F 0.64 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 5 94852694 94852694 G A TTC37 Missense_Mutation p.R788C 0.47 deleterious(0) possibly_damaging(0.762) TCGA-EE-A2MS-06 6 102074293 102074293 G A GRIK2 Missense_Mutation p.G108R 0.74 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 6 102074294 102074294 G A GRIK2 Missense_Mutation p.G108E 0.76 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 6 106553680 106553680 C T PRDM1 Missense_Mutation p.L549F 0.85 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 6 10749456 10749456 C T TMEM14B 5'UTR 0.16 TCGA-EE-A2MS-06 6 109962759 109962759 G A AK9 Nonsense_Mutation p.Q299* 0.85 TCGA-EE-A2MS-06 6 111587465 111587465 C T KIAA1919 Missense_Mutation p.L234F 0.82 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A2MS-06 6 114379098 114379098 C T HS3ST5 Missense_Mutation p.E122K 0.69 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 6 116442158 116442158 C T COL10A1 Missense_Mutation p.G374E 0.19 deleterious(0) unknown(0) TCGA-EE-A2MS-06 6 117700232 117700232 G A ROS1 Missense_Mutation p.R863W 0.76 tolerated(0.08) probably_damaging(0.969) TCGA-EE-A2MS-06 6 127476437 127476437 G A RSPO3 Missense_Mutation p.G163E 0.24 deleterious(0.04) probably_damaging(0.977) TCGA-EE-A2MS-06 6 128134340 128134340 C T THEMIS Silent p.E482E 0.73 TCGA-EE-A2MS-06 6 128134948 128134948 C T THEMIS Missense_Mutation p.E280K 0.78 tolerated(0.12) possibly_damaging(0.487) TCGA-EE-A2MS-06 6 128135035 128135035 C T THEMIS Missense_Mutation p.E251K 0.79 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 6 131973708 131973708 C T ENPP3 Missense_Mutation p.R102C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 6 132645139 132645139 G A MOXD1 Silent p.F348F 0.35 TCGA-EE-A2MS-06 6 133833883 133833883 G A EYA4 Missense_Mutation p.D436N 0.70 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 6 13632704 13632704 G A RANBP9 Silent p.A615A 0.57 TCGA-EE-A2MS-06 6 136582423 136582423 C T BCLAF1 Missense_Mutation p.D913N 0.10 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MS-06 6 136589383 136589383 C T BCLAF1 Missense_Mutation p.E772K 0.24 deleterious(0.04) possibly_damaging(0.486) TCGA-EE-A2MS-06 6 136597445 136597445 C T BCLAF1 Silent p.E406E 0.26 TCGA-EE-A2MS-06 6 136597558 136597558 C T BCLAF1 Missense_Mutation p.G369R 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A2MS-06 6 136599265 136599265 G A BCLAF1 Missense_Mutation p.H252Y 0.15 tolerated(0.12) benign(0.004) TCGA-EE-A2MS-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-EE-A2MS-06 6 136599586 136599586 G A BCLAF1 Missense_Mutation p.R145C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MS-06 6 138539081 138539081 C T PBOV1 3'UTR 0.80 TCGA-EE-A2MS-06 6 144269410 144269410 C T PLAGL1 5'UTR 0.87 TCGA-EE-A2MS-06 6 150240791 150240791 C T RAET1G Missense_Mutation p.V83I 0.31 tolerated(0.16) possibly_damaging(0.814) TCGA-EE-A2MS-06 6 150387223 150387223 C T ULBP3 Missense_Mutation p.S55N 0.74 deleterious(0) benign(0.115) TCGA-EE-A2MS-06 6 150535922 150535922 C T PPP1R14C Missense_Mutation p.L117F 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 6 152461226 152461226 G A SYNE1 Silent p.L8439L 0.32 TCGA-EE-A2MS-06 6 152631048 152631048 G A SYNE1 Silent p.L5708L 0.72 TCGA-EE-A2MS-06 6 152690746 152690746 G A SYNE1 Silent p.L3171L 0.68 TCGA-EE-A2MS-06 6 152861132 152861132 C T SYNE1 Missense_Mutation p.R31Q 0.76 probably_damaging(0.945) TCGA-EE-A2MS-06 6 158924013 158924013 C T TULP4 Silent p.H1106H 0.63 TCGA-EE-A2MS-06 6 159146619 159146619 C T SYTL3 Missense_Mutation p.L269F 0.74 tolerated(0.38) benign(0.275) TCGA-EE-A2MS-06 6 159636168 159636168 G A FNDC1 Missense_Mutation p.E218K 0.22 deleterious(0.03) unknown(0) TCGA-EE-A2MS-06 6 160671648 160671648 C T SLC22A2 Nonsense_Mutation p.W202* 0.76 TCGA-EE-A2MS-06 6 160679775 160679775 C T SLC22A2 Silent p.V5V 0.95 TCGA-EE-A2MS-06 6 160978556 160978556 G A LPA Missense_Mutation p.P1560L 0.80 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MS-06 6 161006211 161006211 G A LPA Nonsense_Mutation p.Q1386* 0.79 TCGA-EE-A2MS-06 6 166571986 166571986 G A T Silent p.F375F 0.95 TCGA-EE-A2MS-06 6 167754894 167754894 G A TTLL2 Silent p.R502R 0.63 TCGA-EE-A2MS-06 6 169648794 169648794 G A THBS2 Silent p.S109S 0.42 TCGA-EE-A2MS-06 6 17649490 17649490 G A NUP153 Silent p.I479I 0.11 TCGA-EE-A2MS-06 6 24174932 24174932 C T DCDC2 3'UTR 0.77 TCGA-EE-A2MS-06 6 24489825 24489825 C T GPLD1 5'UTR 0.58 TCGA-EE-A2MS-06 6 24601303 24601303 G A KIAA0319 Missense_Mutation p.S10L 0.51 tolerated(0.19) benign(0.008) TCGA-EE-A2MS-06 6 25923992 25923992 G A SLC17A2 Silent p.A57A 0.14 TCGA-EE-A2MS-06 6 25983887 25983887 C T TRIM38 Missense_Mutation p.P457L 0.65 tolerated(0.05) possibly_damaging(0.513) TCGA-EE-A2MS-06 6 26393352 26393352 C T BTN2A2 3'UTR 0.16 TCGA-EE-A2MS-06 6 27100920 27100920 C T HIST1H2AG Missense_Mutation p.L24F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-EE-A2MS-06 6 27925685 27925685 C T OR2B6 Nonsense_Mutation p.R223* 0.19 TCGA-EE-A2MS-06 6 27925809 27925809 C T OR2B6 Missense_Mutation p.S264L 0.63 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MS-06 6 28297244 28297244 G A ZSCAN31 Missense_Mutation p.H73Y 0.64 deleterious(0.02) possibly_damaging(0.654) TCGA-EE-A2MS-06 6 28327564 28327564 C T ZKSCAN3 Silent p.L67L 0.13 TCGA-EE-A2MS-06 6 28472213 28472213 C T GPX6 Missense_Mutation p.M174I 0.18 tolerated(0.34) benign(0) TCGA-EE-A2MS-06 6 28542714 28542714 C T SCAND3 Missense_Mutation p.E590K 0.68 tolerated_low_confidence(0.15) benign(0) TCGA-EE-A2MS-06 6 28543161 28543161 C T SCAND3 Missense_Mutation p.E441K 0.71 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-EE-A2MS-06 6 28543719 28543719 C T SCAND3 Missense_Mutation p.E255K 0.14 deleterious_low_confidence(0.02) probably_damaging(0.942) TCGA-EE-A2MS-06 6 29274755 29274755 C T OR14J1 Missense_Mutation p.L97F 0.70 tolerated(0.15) benign(0.03) TCGA-EE-A2MS-06 6 29342252 29342252 C T OR12D3 Silent p.R271R 0.17 TCGA-EE-A2MS-06 6 29342738 29342738 C T OR12D3 Silent p.E109E 0.77 TCGA-EE-A2MS-06 6 29430158 29430158 C T OR2H1 Silent p.F204F 0.77 TCGA-EE-A2MS-06 6 2948542 2948542 G A SERPINB6 Missense_Mutation p.S374F 0.15 deleterious(0.01) benign(0.25) TCGA-EE-A2MS-06 6 30043030 30043030 G A RNF39 Silent p.P179P 0.33 TCGA-EE-A2MS-06 6 30043031 30043031 G A RNF39 Missense_Mutation p.P179L 0.34 tolerated(0.15) possibly_damaging(0.617) TCGA-EE-A2MS-06 6 30075851 30075851 C T TRIM31 Missense_Mutation p.G288R 0.62 deleterious(0.03) benign(0.024) TCGA-EE-A2MS-06 6 30546139 30546139 C T ABCF1 Missense_Mutation p.P120S 0.14 tolerated_low_confidence(0.46) probably_damaging(0.96) TCGA-EE-A2MS-06 6 30546140 30546140 C T ABCF1 Missense_Mutation p.P120L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-EE-A2MS-06 6 30951752 30951752 G A MUC21 Missense_Mutation p.G6E 0.23 tolerated_low_confidence(0.07) unknown(0) TCGA-EE-A2MS-06 6 31083859 31083859 G A CDSN Silent p.P511P 0.19 TCGA-EE-A2MS-06 6 31083860 31083860 G A CDSN Missense_Mutation p.P511L 0.20 deleterious_low_confidence(0) possibly_damaging(0.722) TCGA-EE-A2MS-06 6 31084447 31084447 C T CDSN Silent p.K315K 0.70 TCGA-EE-A2MS-06 6 31379747 31379747 C G MICA Missense_Mutation p.R213G 0.63 tolerated(0.33) possibly_damaging(0.589) TCGA-EE-A2MS-06 6 31525810 31525810 C T NFKBIL1 Missense_Mutation p.H190Y 0.38 tolerated(1) benign(0.029) TCGA-EE-A2MS-06 6 31541214 31541214 C T LTA Missense_Mutation p.S121F 0.60 tolerated(0.56) benign(0.004) TCGA-EE-A2MS-06 6 31545360 31545360 C T TNF 3'UTR 0.62 TCGA-EE-A2MS-06 6 31598926 31598926 C T PRRC2A Missense_Mutation p.P826S 0.16 possibly_damaging(0.641) TCGA-EE-A2MS-06 6 31686778 31686778 G A LY6G6C 3'UTR 0.65 TCGA-EE-A2MS-06 6 31691460 31691460 G A C6orf25 Missense_Mutation p.G36R 0.36 tolerated_low_confidence(0.12) benign(0.002) TCGA-EE-A2MS-06 6 31691594 31691594 C T C6orf25 Silent p.F80F 0.33 TCGA-EE-A2MS-06 6 31727911 31727911 C T MSH5 Missense_Mutation p.S577F 0.39 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A2MS-06 6 31744007 31744007 G A VWA7 Missense_Mutation p.L83F 0.59 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MS-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.28 TCGA-EE-A2MS-06 6 32007339 32007339 C T CYP21A2 Missense_Mutation p.P189L 0.64 tolerated(0.34) benign(0.01) TCGA-EE-A2MS-06 6 32016312 32016312 G A TNXB 5'Flank 0.11 TCGA-EE-A2MS-06 6 32016313 32016313 G A TNXB 5'Flank 0.10 TCGA-EE-A2MS-06 6 32023874 32023874 C T TNXB Missense_Mutation p.E2741K 0.25 probably_damaging(0.979) TCGA-EE-A2MS-06 6 32029321 32029321 C T TNXB Missense_Mutation p.D2449N 0.56 probably_damaging(0.987) TCGA-EE-A2MS-06 6 32041690 32041690 G A RNA5SP206 3'Flank 0.27 TCGA-EE-A2MS-06 6 32049952 32049952 C T RNA5SP206 5'Flank 0.13 TCGA-EE-A2MS-06 6 32095928 32095928 G T ATF6B Missense_Mutation p.D19E 0.34 deleterious(0) possibly_damaging(0.75) TCGA-EE-A2MS-06 6 32150708 32150708 C T AGER Missense_Mutation p.D201N 0.43 tolerated(0.36) benign(0.005) TCGA-EE-A2MS-06 6 32168713 32168713 C T NOTCH4 Missense_Mutation p.D1404N 0.15 tolerated(0.33) possibly_damaging(0.639) TCGA-EE-A2MS-06 6 32782291 32782291 G A HLA-DOB Missense_Mutation p.P150L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 6 32797178 32797178 G A TAP2 Missense_Mutation p.A644V 0.75 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A2MS-06 6 32809461 32809461 T C PSMB8 Missense_Mutation p.M197V 0.34 tolerated(0.52) benign(0.013) TCGA-EE-A2MS-06 6 32904834 32904834 C T HLA-DMB Intron 0.29 TCGA-EE-A2MS-06 6 33156922 33156922 G A COL11A2 Silent p.T92T 0.36 TCGA-EE-A2MS-06 6 33244213 33244213 C T RPS18 Silent p.G143G 0.42 TCGA-EE-A2MS-06 6 33399973 33399973 C T SYNGAP1 Missense_Mutation p.P111S 0.09 tolerated(0.71) benign(0.033) TCGA-EE-A2MS-06 6 33406562 33406562 C T SYNGAP1 Silent p.I514I 0.41 TCGA-EE-A2MS-06 6 33561001 33561001 G A GGNBP1 3'Flank 0.41 TCGA-EE-A2MS-06 6 34003929 34003929 G A GRM4 Missense_Mutation p.S653L 0.56 deleterious(0.01) possibly_damaging(0.542) TCGA-EE-A2MS-06 6 34101185 34101185 G A GRM4 Missense_Mutation p.S30F 0.16 tolerated(0.17) benign(0.064) TCGA-EE-A2MS-06 6 348772 348772 C T DUSP22 Missense_Mutation p.R147W 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 6 35773458 35773458 T A LHFPL5 Nonsense_Mutation p.L4* 0.28 TCGA-EE-A2MS-06 6 35960338 35960338 G A SLC26A8 Silent p.F247F 0.86 TCGA-EE-A2MS-06 6 36106167 36106167 G A MAPK13 Silent p.L236L 0.94 TCGA-EE-A2MS-06 6 36979490 36979490 C T FGD2 Silent p.F129F 0.59 TCGA-EE-A2MS-06 6 38875791 38875791 G A DNAH8 Silent p.V2919V 0.47 TCGA-EE-A2MS-06 6 38913246 38913246 G A DNAH8 Missense_Mutation p.G3787E 0.23 probably_damaging(1) TCGA-EE-A2MS-06 6 39159434 39159434 C T KCNK5 Nonsense_Mutation p.W244* 0.23 TCGA-EE-A2MS-06 6 39282655 39282655 C T KCNK16 3'UTR 0.27 TCGA-EE-A2MS-06 6 4032432 4032432 C T PRPF4B Silent p.S227S 0.71 TCGA-EE-A2MS-06 6 4032706 4032706 A G PRPF4B Missense_Mutation p.T319A 0.66 tolerated_low_confidence(0.5) benign(0.027) TCGA-EE-A2MS-06 6 42666022 42666022 C T PRPH2 3'UTR 0.70 TCGA-EE-A2MS-06 6 42796529 42796529 C T GLTSCR1L Missense_Mutation p.S153F 0.88 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MS-06 6 42906465 42906465 C T CNPY3 Missense_Mutation p.P258L 0.87 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A2MS-06 6 43167691 43167691 C T CUL9 Silent p.L1061L 0.85 TCGA-EE-A2MS-06 6 45296521 45296521 G A RUNX2 Missense_Mutation p.D20N 0.62 deleterious(0.01) benign(0.059) TCGA-EE-A2MS-06 6 46620409 46620409 G A CYP39A1 5'UTR 0.23 TCGA-EE-A2MS-06 6 47202494 47202494 G A TNFRSF21 Silent p.F550F 0.18 TCGA-EE-A2MS-06 6 49753821 49753821 C T PGK2 Silent p.V360V 0.64 TCGA-EE-A2MS-06 6 50805795 50805795 C T TFAP2B Missense_Mutation p.S310F 0.24 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 6 52993217 52993217 C T GCM1 Silent p.E366E 0.13 TCGA-EE-A2MS-06 6 54254765 54254765 C T TINAG 3'UTR 0.12 TCGA-EE-A2MS-06 6 54735289 54735289 C T FAM83B Missense_Mutation p.S82F 0.14 deleterious(0.05) benign(0.021) TCGA-EE-A2MS-06 6 54805757 54805757 G A FAM83B Missense_Mutation p.R663Q 0.62 deleterious(0.02) probably_damaging(0.943) TCGA-EE-A2MS-06 6 55039329 55039329 C T HCRTR2 5'UTR 0.21 TCGA-EE-A2MS-06 6 56044778 56044778 G A COL21A1 Nonsense_Mutation p.Q80* 0.86 TCGA-EE-A2MS-06 6 56458588 56458588 C T DST Missense_Mutation p.R1577K 0.15 benign(0.124) TCGA-EE-A2MS-06 6 63990162 63990162 G A LGSN Missense_Mutation p.H432Y 0.10 deleterious(0.05) benign(0) TCGA-EE-A2MS-06 6 69349304 69349304 C T BAI3 Missense_Mutation p.A246V 0.38 tolerated(0.32) benign(0) TCGA-EE-A2MS-06 6 71190694 71190694 C T FAM135A Silent p.V211V 0.80 TCGA-EE-A2MS-06 6 7230453 7230453 C T RREB1 Silent p.P707P 0.52 TCGA-EE-A2MS-06 6 7373578 7373578 G A CAGE1 Nonsense_Mutation p.Q492* 0.54 TCGA-EE-A2MS-06 6 73952130 73952130 G A KHDC1 Silent p.F110F 0.45 TCGA-EE-A2MS-06 6 74519803 74519803 C T CD109 Missense_Mutation p.S1151L 0.90 deleterious(0) benign(0.201) TCGA-EE-A2MS-06 6 7568118 7568118 G A DSP Silent p.L415L 0.11 TCGA-EE-A2MS-06 6 7568687 7568687 C T DSP Silent p.I428I 0.68 TCGA-EE-A2MS-06 6 7581653 7581653 G A DSP Missense_Mutation p.D1744N 0.15 benign(0.069) TCGA-EE-A2MS-06 6 7583607 7583607 A G DSP Missense_Mutation p.K2038E 0.30 benign(0.05) TCGA-EE-A2MS-06 6 7583695 7583695 T C DSP Missense_Mutation p.L2067P 0.67 probably_damaging(1) TCGA-EE-A2MS-06 6 76751784 76751784 C T IMPG1 Missense_Mutation p.E43K 0.31 tolerated(0.07) benign(0.059) TCGA-EE-A2MS-06 6 7727831 7727831 G A BMP6 Missense_Mutation p.V215I 0.24 tolerated(0.18) possibly_damaging(0.462) TCGA-EE-A2MS-06 6 83896745 83896745 G T PGM3 Missense_Mutation p.L175I 0.84 tolerated(0.23) benign(0.062) TCGA-EE-A2MS-06 6 84234429 84234429 C T PRSS35 3'UTR 0.64 TCGA-EE-A2MS-06 6 84311154 84311154 G A SNAP91 Missense_Mutation p.S387F 0.71 deleterious(0.01) unknown(0) TCGA-EE-A2MS-06 6 85446677 85446677 G A TBX18 Missense_Mutation p.S517F 0.37 tolerated(0.05) probably_damaging(0.986) TCGA-EE-A2MS-06 6 90482425 90482425 G A MDN1 Silent p.F650F 0.33 TCGA-EE-A2MS-06 6 90604271 90604271 C T GJA10 Silent p.I28I 0.69 TCGA-EE-A2MS-06 6 93964399 93964399 C T EPHA7 Missense_Mutation p.G833E 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 6 94120701 94120701 C T EPHA7 Missense_Mutation p.G117E 0.73 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 6 96651729 96651729 C T FUT9 Missense_Mutation p.P233L 0.80 deleterious(0.01) benign(0.398) TCGA-EE-A2MS-06 6 97001327 97001327 C T UFL1 Missense_Mutation p.S778F 0.36 tolerated(0.06) possibly_damaging(0.535) TCGA-EE-A2MS-06 6 99856122 99856122 G A PNISR Silent p.P233P 0.80 TCGA-EE-A2MS-06 6 99856123 99856123 G A PNISR Missense_Mutation p.P233L 0.78 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 7 100084532 100084532 C A NYAP1 Silent p.R53R 0.19 TCGA-EE-A2MS-06 7 100179430 100179430 G A LRCH4 Missense_Mutation p.R190W 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 100187485 100187485 G A FBXO24 Intron 0.22 TCGA-EE-A2MS-06 7 100187563 100187563 G A FBXO24 Intron 0.38 TCGA-EE-A2MS-06 7 100193253 100193253 G A FBXO24 Missense_Mutation p.R415Q 0.90 tolerated(0.07) possibly_damaging(0.553) TCGA-EE-A2MS-06 7 100346084 100346084 C T ZAN Missense_Mutation p.P414S 0.90 possibly_damaging(0.896) TCGA-EE-A2MS-06 7 100389760 100389760 C T ZAN Missense_Mutation p.P2567S 0.20 unknown(0) TCGA-EE-A2MS-06 7 100391863 100391863 C T ZAN Intron 0.17 TCGA-EE-A2MS-06 7 100491625 100491625 G A ACHE Missense_Mutation p.R77C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 100549542 100549542 C T MUC3A Silent p.S41S 0.09 TCGA-EE-A2MS-06 7 100552270 100552270 G A MUC3A Missense_Mutation p.E341K 0.11 deleterious(0.01) possibly_damaging(0.903) TCGA-EE-A2MS-06 7 100677939 100677939 C T MUC17 Missense_Mutation p.S1081L 0.27 benign(0.307) TCGA-EE-A2MS-06 7 100684356 100684356 G A MUC17 Missense_Mutation p.G3220E 0.30 probably_damaging(0.981) TCGA-EE-A2MS-06 7 100701424 100701424 C T MUC17 3'UTR 0.23 TCGA-EE-A2MS-06 7 100839562 100839562 G A MOGAT3 Silent p.L259L 0.90 TCGA-EE-A2MS-06 7 100855845 100855845 G A PLOD3 Missense_Mutation p.P324L 0.93 deleterious(0) possibly_damaging(0.69) TCGA-EE-A2MS-06 7 101926061 101926061 G A SH2B2 5'Flank 0.15 TCGA-EE-A2MS-06 7 103051948 103051948 A C SLC26A5 Missense_Mutation p.N163K 0.91 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MS-06 7 103338393 103338393 G A RELN Silent p.I350I 0.60 TCGA-EE-A2MS-06 7 104377262 104377262 G A LHFPL3 Missense_Mutation p.G196R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 107389390 107389390 C T CBLL1 Missense_Mutation p.P27S 0.31 deleterious(0.04) probably_damaging(0.973) TCGA-EE-A2MS-06 7 107576057 107576057 C T LAMB1 Missense_Mutation p.A1331T 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 107576058 107576058 C T LAMB1 Silent p.E1330E 0.90 TCGA-EE-A2MS-06 7 107688391 107688391 G A LAMB4 Missense_Mutation p.R1430C 0.89 tolerated(0.06) benign(0.28) TCGA-EE-A2MS-06 7 107807505 107807505 C T NRCAM Nonsense_Mutation p.W1109* 0.91 TCGA-EE-A2MS-06 7 111430560 111430560 G A DOCK4 Missense_Mutation p.H1090Y 0.28 tolerated(0.32) possibly_damaging(0.703) TCGA-EE-A2MS-06 7 111584865 111584865 C T DOCK4 Splice_Site p.X282_splice 0.37 TCGA-EE-A2MS-06 7 111846768 111846768 G A ZNF277 5'UTR 0.30 TCGA-EE-A2MS-06 7 113519652 113519652 C T PPP1R3A Missense_Mutation p.E499K 0.22 tolerated(0.63) benign(0.002) TCGA-EE-A2MS-06 7 11676536 11676536 C T THSD7A Silent p.T81T 0.28 TCGA-EE-A2MS-06 7 117149196 117149196 G A CFTR Silent p.G91G 0.10 TCGA-EE-A2MS-06 7 1195110 1195110 G A ZFAND2A Silent p.H87H 0.63 TCGA-EE-A2MS-06 7 121773576 121773576 C T AASS Missense_Mutation p.D69N 0.14 tolerated(0.5) possibly_damaging(0.735) TCGA-EE-A2MS-06 7 121943722 121943722 G A FEZF1 Missense_Mutation p.P257L 0.92 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2MS-06 7 122787233 122787233 G A SLC13A1 Silent p.I264I 0.93 TCGA-EE-A2MS-06 7 123509273 123509273 C T HYAL4 Missense_Mutation p.L316F 0.31 deleterious(0.01) possibly_damaging(0.824) TCGA-EE-A2MS-06 7 126173412 126173412 C T GRM8 Missense_Mutation p.R675Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 7 126173566 126173566 C T GRM8 Missense_Mutation p.V624M 0.70 tolerated(0.09) probably_damaging(0.915) TCGA-EE-A2MS-06 7 127236431 127236431 C T FSCN3 Silent p.F297F 0.14 TCGA-EE-A2MS-06 7 127341362 127341362 C T SND1 Nonsense_Mutation p.Q192* 0.92 TCGA-EE-A2MS-06 7 127729645 127729645 C T SND1 Silent p.T841T 0.23 TCGA-EE-A2MS-06 7 128484222 128484222 G A FLNC Missense_Mutation p.E1032K 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 7 128802353 128802353 C T TSPAN33 Silent p.L93L 0.11 TCGA-EE-A2MS-06 7 128802354 128802354 C T TSPAN33 Silent p.L94L 0.12 TCGA-EE-A2MS-06 7 128852401 128852401 G A SMO 3'UTR 0.75 TCGA-EE-A2MS-06 7 129350218 129350218 C T NRF1 Missense_Mutation p.S257L 0.87 deleterious(0) possibly_damaging(0.8) TCGA-EE-A2MS-06 7 129760665 129760665 C T KLHDC10 Silent p.V184V 0.17 TCGA-EE-A2MS-06 7 129832562 129832562 G A TMEM209 Silent p.V225V 0.11 TCGA-EE-A2MS-06 7 130023288 130023288 C T CPA1 Silent p.S180S 0.25 TCGA-EE-A2MS-06 7 131887528 131887528 G A PLXNA4 Silent p.F821F 0.88 TCGA-EE-A2MS-06 7 132192412 132192412 C T PLXNA4 Missense_Mutation p.M347I 0.60 tolerated(0.27) benign(0.159) TCGA-EE-A2MS-06 7 133041131 133041131 C T EXOC4 Missense_Mutation p.P271S 0.14 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MS-06 7 133041132 133041132 C T EXOC4 Missense_Mutation p.P271L 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 7 134252964 134252964 C T AKR1B15 Missense_Mutation p.R69C 0.26 tolerated(0.06) benign(0.247) TCGA-EE-A2MS-06 7 135300760 135300760 C T NUP205 Missense_Mutation p.T1136I 0.12 deleterious(0.02) possibly_damaging(0.733) TCGA-EE-A2MS-06 7 136700260 136700260 G A CHRM2 Silent p.R216R 0.92 TCGA-EE-A2MS-06 7 136700301 136700301 C T CHRM2 Missense_Mutation p.P230L 0.10 tolerated(0.19) benign(0.026) TCGA-EE-A2MS-06 7 136700369 136700369 G A CHRM2 Missense_Mutation p.D253N 0.87 tolerated(0.45) benign(0.146) TCGA-EE-A2MS-06 7 137271913 137271913 G A DGKI Missense_Mutation p.P452L 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 137590524 137590524 G A CREB3L2 Missense_Mutation p.P280L 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 7 138305826 138305826 G A SVOPL Missense_Mutation p.R440C 0.86 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MS-06 7 138819479 138819479 C T TTC26 Missense_Mutation p.P28S 0.25 deleterious(0.01) possibly_damaging(0.888) TCGA-EE-A2MS-06 7 138819480 138819480 C T TTC26 Missense_Mutation p.P28L 0.25 tolerated(0.06) benign(0.093) TCGA-EE-A2MS-06 7 13971235 13971235 G A ETV1 Missense_Mutation p.H232Y 0.63 tolerated(1) possibly_damaging(0.723) TCGA-EE-A2MS-06 7 139826443 139826443 G A KDM7A Silent p.V294V 0.13 TCGA-EE-A2MS-06 7 141752100 141752100 A T MGAM Missense_Mutation p.I938F 0.85 tolerated(0.72) benign(0.036) TCGA-EE-A2MS-06 7 141800622 141800622 T C MGAM Missense_Mutation p.F1736S 0.18 deleterious(0) possibly_damaging(0.693) TCGA-EE-A2MS-06 7 142013374 142013374 G A TRBV4-1 Missense_Mutation p.E77K 0.89 tolerated(0.11) benign(0.027) TCGA-EE-A2MS-06 7 142028416 142028416 C T TRBV6-1 Silent p.S50S 0.15 TCGA-EE-A2MS-06 7 142231754 142231754 G A TRBV10-1 Nonsense_Mutation p.R55* 0.27 TCGA-EE-A2MS-06 7 142327008 142327008 G A TRBV19 Silent p.K102K 0.30 TCGA-EE-A2MS-06 7 142562473 142562473 C T EPHB6 Silent p.Y305Y 0.90 TCGA-EE-A2MS-06 7 142572893 142572893 C T TRPV6 Missense_Mutation p.D383N 0.23 tolerated(0.69) benign(0.001) TCGA-EE-A2MS-06 7 142627202 142627202 C T TRPV5 Silent p.E100E 0.11 TCGA-EE-A2MS-06 7 142960620 142960620 C T GSTK1 Missense_Mutation p.P5L 0.24 deleterious(0.05) benign(0.004) TCGA-EE-A2MS-06 7 143632574 143632574 A C OR2F2 Silent p.A83A 0.31 TCGA-EE-A2MS-06 7 143771670 143771670 G A OR2A25 Missense_Mutation p.D120N 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 143771784 143771784 C T OR2A25 Missense_Mutation p.H158Y 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A2MS-06 7 14378178 14378178 G A DGKB Missense_Mutation p.T696I 0.58 tolerated(0.21) benign(0.214) TCGA-EE-A2MS-06 7 143827081 143827081 G A OR2A14 Silent p.R292R 0.90 TCGA-EE-A2MS-06 7 143929579 143929579 C T OR2A42 Missense_Mutation p.D120N 0.45 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MS-06 7 144060549 144060549 G A ARHGEF5 Missense_Mutation p.E263K 0.11 tolerated(0.15) benign(0.007) TCGA-EE-A2MS-06 7 144098156 144098156 C T NOBOX Missense_Mutation p.R276Q 0.88 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 7 14613992 14613992 C T DGKB Missense_Mutation p.E540K 0.15 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A2MS-06 7 148767554 148767554 G A ZNF786 Silent p.L770L 0.92 TCGA-EE-A2MS-06 7 148768946 148768946 G T ZNF786 Silent p.L306L 0.21 TCGA-EE-A2MS-06 7 148769427 148769427 G A ZNF786 Missense_Mutation p.A146V 0.86 tolerated(0.24) benign(0.021) TCGA-EE-A2MS-06 7 148815384 148815384 G A ZNF425 Silent p.I25I 0.31 TCGA-EE-A2MS-06 7 149425632 149425632 C T KRBA1 Missense_Mutation p.S498F 0.11 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MS-06 7 149510822 149510822 C T SSPO RNA 0.90 TCGA-EE-A2MS-06 7 149510823 149510823 C T SSPO RNA 0.91 TCGA-EE-A2MS-06 7 149576726 149576726 C T ATP6V0E2 Missense_Mutation p.P201L 0.91 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A2MS-06 7 150269461 150269461 G A GIMAP4 Silent p.K101K 0.26 TCGA-EE-A2MS-06 7 150269975 150269975 G A GIMAP4 Missense_Mutation p.E273K 0.28 tolerated(0.15) benign(0.011) TCGA-EE-A2MS-06 7 150491139 150491139 C T TMEM176B Silent p.G75G 0.27 TCGA-EE-A2MS-06 7 150649601 150649601 G A KCNH2 Missense_Mutation p.A490V 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 150835375 150835375 C T AGAP3 Silent p.S547S 0.91 TCGA-EE-A2MS-06 7 150835376 150835376 C T AGAP3 Silent p.L548L 0.88 TCGA-EE-A2MS-06 7 150841005 150841005 T C AGAP3 Missense_Mutation p.L904P 0.13 deleterious_low_confidence(0.01) benign(0.367) TCGA-EE-A2MS-06 7 151073881 151073881 C T NUB1 Silent p.S575S 0.83 TCGA-EE-A2MS-06 7 152550596 152550596 C T ACTR3B Silent p.V365V 0.25 TCGA-EE-A2MS-06 7 154684121 154684121 C T DPP6 Silent p.F843F 0.31 TCGA-EE-A2MS-06 7 154862937 154862937 G A HTR5A-AS1 Missense_Mutation p.P26L 0.27 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-EE-A2MS-06 7 157475461 157475461 C T PTPRN2 Missense_Mutation p.G653R 0.11 deleterious(0.01) benign(0.086) TCGA-EE-A2MS-06 7 157959902 157959902 G A PTPRN2 Nonsense_Mutation p.Q211* 0.32 TCGA-EE-A2MS-06 7 158456965 158456965 G A NCAPG2 Missense_Mutation p.H576Y 0.91 deleterious(0) benign(0.328) TCGA-EE-A2MS-06 7 16823074 16823074 G A TSPAN13 Silent p.R191R 0.25 TCGA-EE-A2MS-06 7 16832568 16832568 C T AGR2 Missense_Mutation p.M164I 0.11 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MS-06 7 18687443 18687443 G A HDAC9 Silent p.E357E 0.11 TCGA-EE-A2MS-06 7 18688206 18688206 C T HDAC9 Missense_Mutation p.P456L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 18767315 18767315 C T HDAC9 Missense_Mutation p.S615F 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 7 18801862 18801862 C T HDAC9 Missense_Mutation p.P709L 0.14 deleterious(0) possibly_damaging(0.839) TCGA-EE-A2MS-06 7 20180540 20180540 C T MACC1 3'UTR 0.57 TCGA-EE-A2MS-06 7 20778753 20778753 G A ABCB5 Silent p.G1005G 0.28 TCGA-EE-A2MS-06 7 20793056 20793056 G A ABCB5 Missense_Mutation p.R1168K 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 7 21721208 21721208 T G DNAH11 Silent p.L1796L 0.22 TCGA-EE-A2MS-06 7 21940955 21940955 A G DNAH11 3'UTR 0.71 TCGA-EE-A2MS-06 7 22202140 22202140 G A RAPGEF5 Nonsense_Mutation p.Q282* 0.16 TCGA-EE-A2MS-06 7 2402736 2402736 C T EIF3B Missense_Mutation p.P282S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 7 24681479 24681479 C T MPP6 Missense_Mutation p.H88Y 0.31 deleterious(0.03) possibly_damaging(0.896) TCGA-EE-A2MS-06 7 24690151 24690151 C A MPP6 Silent p.I157I 0.32 TCGA-EE-A2MS-06 7 24705212 24705212 C T MPP6 Silent p.S263S 0.23 TCGA-EE-A2MS-06 7 27168851 27168851 G A HOXA4 Missense_Mutation p.S319F 0.34 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MS-06 7 2802292 2802292 G A GNA12 Intron 0.45 TCGA-EE-A2MS-06 7 30168918 30168918 C T PLEKHA8 3'UTR 0.27 TCGA-EE-A2MS-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.31 tolerated(0.19) benign(0.198) TCGA-EE-A2MS-06 7 30825437 30825437 C T FAM188B Silent p.P164P 0.23 TCGA-EE-A2MS-06 7 31142941 31142941 G A ADCYAP1R1 Silent p.R407R 0.11 TCGA-EE-A2MS-06 7 31378227 31378227 G A NEUROD6 Missense_Mutation p.P219L 0.26 tolerated(0.06) probably_damaging(0.975) TCGA-EE-A2MS-06 7 31829796 31829796 G A PDE1C Intron 0.34 TCGA-EE-A2MS-06 7 31855735 31855735 G A PDE1C Missense_Mutation p.A599V 0.32 tolerated(0.18) benign(0.002) TCGA-EE-A2MS-06 7 31855742 31855742 C T PDE1C Missense_Mutation p.E597K 0.28 tolerated(0.17) possibly_damaging(0.872) TCGA-EE-A2MS-06 7 32909261 32909261 G A KBTBD2 Missense_Mutation p.P523L 0.62 deleterious(0.02) benign(0.109) TCGA-EE-A2MS-06 7 34091542 34091542 C T BMPER Missense_Mutation p.S249F 0.55 tolerated(0.14) benign(0.309) TCGA-EE-A2MS-06 7 35284647 35284647 G A TBX20 Missense_Mutation p.P190S 0.32 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 7 35288374 35288374 G A TBX20 Missense_Mutation p.P154S 0.13 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MS-06 7 36327374 36327374 G A EEPD1 Missense_Mutation p.E435K 0.14 tolerated(0.1) benign(0.328) TCGA-EE-A2MS-06 7 36657921 36657921 C T AOAH Missense_Mutation p.E245K 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 7 37907312 37907312 C T NME8 Silent p.F210F 0.25 TCGA-EE-A2MS-06 7 37927900 37927900 G A NME8 Missense_Mutation p.M423I 0.28 tolerated(0.51) benign(0.015) TCGA-EE-A2MS-06 7 4008917 4008917 C T SDK1 Silent p.V525V 0.16 TCGA-EE-A2MS-06 7 43508575 43508575 C T HECW1 Silent p.V990V 0.28 TCGA-EE-A2MS-06 7 43917086 43917086 G A URGCP Missense_Mutation p.P659L 0.76 deleterious(0) possibly_damaging(0.689) TCGA-EE-A2MS-06 7 43918514 43918514 G A URGCP Missense_Mutation p.P183L 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MS-06 7 44579502 44579502 G A NPC1L1 Missense_Mutation p.A165V 0.67 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A2MS-06 7 44684995 44684995 C T OGDH Missense_Mutation p.P98S 0.29 tolerated(0.32) benign(0.001) TCGA-EE-A2MS-06 7 44715757 44715757 C T OGDH Intron 0.67 TCGA-EE-A2MS-06 7 44795866 44795866 C T ZMIZ2 Silent p.P6P 0.22 TCGA-EE-A2MS-06 7 45006306 45006306 G A MYO1G Silent p.F638F 0.12 TCGA-EE-A2MS-06 7 45009048 45009048 C T MYO1G Missense_Mutation p.R513Q 0.24 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2MS-06 7 47874793 47874793 G A PKD1L1 Silent p.L1998L 0.62 TCGA-EE-A2MS-06 7 47930226 47930226 G A PKD1L1 Silent p.F863F 0.22 TCGA-EE-A2MS-06 7 48356767 48356767 G A ABCA13 Silent p.L3291L 0.26 TCGA-EE-A2MS-06 7 4839353 4839353 C T RADIL Silent p.P1010P 0.81 TCGA-EE-A2MS-06 7 4949534 4949534 G A MMD2 Missense_Mutation p.P196L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 50531040 50531040 A G DDC Silent p.F444F 0.21 TCGA-EE-A2MS-06 7 50605624 50605624 C T DDC Silent p.G123G 0.30 TCGA-EE-A2MS-06 7 50607616 50607616 G A DDC Silent p.S104S 0.16 TCGA-EE-A2MS-06 7 5104889 5104889 G A RBAK Missense_Mutation p.G601E 0.59 tolerated(0.11) probably_damaging(1) TCGA-EE-A2MS-06 7 51111119 51111119 G A COBL Missense_Mutation p.P456L 0.28 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A2MS-06 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.28 TCGA-EE-A2MS-06 7 5334529 5334529 C T SLC29A4 Missense_Mutation p.P195S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 5334530 5334530 C T SLC29A4 Missense_Mutation p.P195L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 7 54610421 54610421 G A VSTM2A 5'UTR 0.17 TCGA-EE-A2MS-06 7 55240814 55240814 G A EGFR Silent p.R686R 0.56 TCGA-EE-A2MS-06 7 55269037 55269037 C T EGFR Silent p.L1035L 0.27 TCGA-EE-A2MS-06 7 56006825 56006825 C T ZNF713 Missense_Mutation p.P140L 0.15 tolerated(1) benign(0) TCGA-EE-A2MS-06 7 57193792 57193792 G A ZNF479 Silent p.I65I 0.61 TCGA-EE-A2MS-06 7 57194352 57194352 C T ZNF479 Missense_Mutation p.R38Q 0.21 tolerated(1) benign(0.004) TCGA-EE-A2MS-06 7 63726795 63726795 C T ZNF679 Missense_Mutation p.H262Y 0.62 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MS-06 7 64437982 64437982 A G ZNF117 3'UTR 0.73 TCGA-EE-A2MS-06 7 64437983 64437983 G A ZNF117 3'UTR 0.75 TCGA-EE-A2MS-06 7 64643370 64643370 C T INTS4L1 RNA 0.69 TCGA-EE-A2MS-06 7 65228327 65228327 G C SNORA15 3'Flank 0.07 TCGA-EE-A2MS-06 7 66104087 66104087 C T KCTD7 Silent p.H246H 0.67 TCGA-EE-A2MS-06 7 70231110 70231110 C T AUTS2 Silent p.I493I 0.31 TCGA-EE-A2MS-06 7 71743780 71743780 G A CALN1 Silent p.F45F 0.24 TCGA-EE-A2MS-06 7 72413666 72413666 C T POM121 Missense_Mutation p.S780L 0.18 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2MS-06 7 72413956 72413956 C T POM121 Missense_Mutation p.P877S 0.32 tolerated(0.12) probably_damaging(0.996) TCGA-EE-A2MS-06 7 72657494 72657494 C T GTF2IRD2P1 RNA 0.29 TCGA-EE-A2MS-06 7 73245539 73245539 C T CLDN4 Missense_Mutation p.S3F 0.67 deleterious(0) possibly_damaging(0.832) TCGA-EE-A2MS-06 7 73275540 73275540 C T WBSCR28 Missense_Mutation p.P6S 0.64 tolerated(0.22) probably_damaging(0.932) TCGA-EE-A2MS-06 7 73961534 73961534 C T GTF2IRD1 Missense_Mutation p.L644F 0.31 tolerated(0.3) probably_damaging(1) TCGA-EE-A2MS-06 7 74146864 74146864 C G GTF2I Missense_Mutation p.L389V 0.56 tolerated(1) possibly_damaging(0.817) TCGA-EE-A2MS-06 7 74146890 74146890 T A GTF2I Silent p.L397L 0.53 TCGA-EE-A2MS-06 7 75052192 75052192 G A POM121C Missense_Mutation p.P448L 0.61 tolerated(0.06) benign(0.006) TCGA-EE-A2MS-06 7 75517586 75517586 C T RHBDD2 Silent p.S338S 0.65 TCGA-EE-A2MS-06 7 75517587 75517587 C T RHBDD2 Missense_Mutation p.P339S 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-EE-A2MS-06 7 75573182 75573182 C T POR Intron 0.90 TCGA-EE-A2MS-06 7 7571422 7571422 G A COL28A1 Nonsense_Mutation p.Q80* 0.12 TCGA-EE-A2MS-06 7 76943801 76943801 G A GSAP Missense_Mutation p.H699Y 0.92 deleterious(0) probably_damaging(0.931) TCGA-EE-A2MS-06 7 80091847 80091847 C T GNAT3 Missense_Mutation p.D231N 0.93 deleterious(0.02) possibly_damaging(0.557) TCGA-EE-A2MS-06 7 8110708 8110708 C T GLCCI1 Missense_Mutation p.S375F 0.60 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A2MS-06 7 82538248 82538248 C T PCLO Missense_Mutation p.R4461Q 0.95 unknown(0) TCGA-EE-A2MS-06 7 82545000 82545000 G A PCLO Missense_Mutation p.S4101F 0.24 unknown(0) TCGA-EE-A2MS-06 7 82546144 82546144 C T PCLO Missense_Mutation p.V3720I 0.94 unknown(0) TCGA-EE-A2MS-06 7 82582033 82582033 C T PCLO Missense_Mutation p.D2746N 0.09 unknown(0) TCGA-EE-A2MS-06 7 82582368 82582368 G A PCLO Missense_Mutation p.S2634F 0.92 unknown(0) TCGA-EE-A2MS-06 7 86394864 86394864 C T GRM3 Nonsense_Mutation p.Q135* 0.25 TCGA-EE-A2MS-06 7 87913487 87913487 G A STEAP4 Missense_Mutation p.S33L 0.91 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 7 88963128 88963128 G A ZNF804B Missense_Mutation p.E278K 0.14 tolerated(0.21) benign(0.037) TCGA-EE-A2MS-06 7 89866207 89866207 C T STEAP2 3'UTR 0.39 TCGA-EE-A2MS-06 7 90741917 90741917 G A CDK14 Silent p.K387K 0.59 TCGA-EE-A2MS-06 7 91730219 91730219 C T AKAP9 Missense_Mutation p.A3649V 0.25 possibly_damaging(0.628) TCGA-EE-A2MS-06 7 91730220 91730220 C T AKAP9 Silent p.A3649A 0.24 TCGA-EE-A2MS-06 7 92761585 92761585 C T SAMD9L Missense_Mutation p.G1234R 0.94 deleterious(0) probably_damaging(0.943) TCGA-EE-A2MS-06 7 93055755 93055755 C T CALCR Silent p.E480E 0.22 TCGA-EE-A2MS-06 7 93055756 93055756 T A CALCR Missense_Mutation p.E480V 0.23 deleterious(0.01) possibly_damaging(0.809) TCGA-EE-A2MS-06 7 93090138 93090138 C T CALCR Missense_Mutation p.D249N 0.93 tolerated(0.95) benign(0.081) TCGA-EE-A2MS-06 7 94540348 94540348 C T PPP1R9A Missense_Mutation p.S308F 0.31 deleterious(0.03) possibly_damaging(0.601) TCGA-EE-A2MS-06 7 94540507 94540507 G A PPP1R9A Missense_Mutation p.R361K 0.14 tolerated(0.5) benign(0.005) TCGA-EE-A2MS-06 7 97832933 97832933 C T LMTK2 Silent p.G1385G 0.31 TCGA-EE-A2MS-06 7 97874210 97874210 G T TECPR1 Missense_Mutation p.P132H 0.33 deleterious(0) possibly_damaging(0.643) TCGA-EE-A2MS-06 7 98547149 98547149 C T TRRAP Missense_Mutation p.P1626L 0.31 benign(0.115) TCGA-EE-A2MS-06 7 98983391 98983391 G A ARPC1B Silent p.K18K 0.94 TCGA-EE-A2MS-06 7 99693582 99693582 G A MCM7 Silent p.A470A 0.23 TCGA-EE-A2MS-06 7 99697317 99697317 C T MCM7 Silent p.E57E 0.28 TCGA-EE-A2MS-06 8 100026003 100026003 C T VPS13B 5'UTR 0.41 TCGA-EE-A2MS-06 8 101020656 101020656 G A RGS22 Missense_Mutation p.L770F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 101076105 101076105 C T RGS22 Silent p.K297K 0.49 TCGA-EE-A2MS-06 8 102661702 102661702 C T GRHL2 Missense_Mutation p.P558L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 103306290 103306290 T A UBR5 Silent p.T1414T 0.39 TCGA-EE-A2MS-06 8 10467498 10467498 C T RP1L1 Silent p.E1370E 0.70 TCGA-EE-A2MS-06 8 10468596 10468596 C T RP1L1 Silent p.G1004G 0.57 TCGA-EE-A2MS-06 8 105026827 105026827 G A RIMS2 Silent p.K1106K 0.54 TCGA-EE-A2MS-06 8 105361735 105361735 C T DCSTAMP Missense_Mutation p.R319W 0.25 tolerated(0.3) benign(0.006) TCGA-EE-A2MS-06 8 105367392 105367392 G A DCSTAMP Silent p.R439R 0.54 TCGA-EE-A2MS-06 8 105405096 105405096 G A DPYS Silent p.F453F 0.52 TCGA-EE-A2MS-06 8 106815015 106815015 G A ZFPM2 Missense_Mutation p.R902Q 0.35 tolerated(0.61) possibly_damaging(0.578) TCGA-EE-A2MS-06 8 110100443 110100443 G A TRHR Nonsense_Mutation p.W234* 0.42 TCGA-EE-A2MS-06 8 110131721 110131721 G A TRHR 3'UTR 0.57 TCGA-EE-A2MS-06 8 110412521 110412521 G A PKHD1L1 Missense_Mutation p.G410D 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A2MS-06 8 110457059 110457059 G A PKHD1L1 Missense_Mutation p.R1654Q 0.27 deleterious(0.03) benign(0.079) TCGA-EE-A2MS-06 8 110477410 110477410 G A PKHD1L1 Silent p.P2783P 0.55 TCGA-EE-A2MS-06 8 110498985 110498985 C T PKHD1L1 Missense_Mutation p.S3272F 0.44 tolerated(1) benign(0) TCGA-EE-A2MS-06 8 113267556 113267556 G A CSMD3 Silent p.F3321F 0.40 TCGA-EE-A2MS-06 8 113293562 113293562 G A CSMD3 Missense_Mutation p.P3117S 0.50 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MS-06 8 113318320 113318320 G A CSMD3 Nonsense_Mutation p.R2663* 0.51 TCGA-EE-A2MS-06 8 113529299 113529299 G A CSMD3 Missense_Mutation p.R1574W 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 8 117950577 117950577 C T AARD Missense_Mutation p.P32L 0.43 tolerated(0.09) probably_damaging(0.958) TCGA-EE-A2MS-06 8 118811843 118811843 G A EXT1 3'UTR 0.45 TCGA-EE-A2MS-06 8 119209968 119209968 G A SAMD12 Missense_Mutation p.S143L 0.53 tolerated(0.06) benign(0.034) TCGA-EE-A2MS-06 8 124204148 124204148 G A FAM83A Missense_Mutation p.G196R 0.48 tolerated(0.51) benign(0.01) TCGA-EE-A2MS-06 8 124206276 124206276 C T FAM83A Missense_Mutation p.R221W 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 124340747 124340747 G A ATAD2 Missense_Mutation p.S1184L 0.36 tolerated(0.15) benign(0.001) TCGA-EE-A2MS-06 8 125072985 125072985 C T FER1L6 Intron 0.54 TCGA-EE-A2MS-06 8 125498514 125498514 T G RNF139 Silent p.V208V 0.51 TCGA-EE-A2MS-06 8 125551344 125551344 C T TATDN1 5'Flank 0.26 TCGA-EE-A2MS-06 8 126379200 126379200 C T NSMCE2 3'UTR 0.38 TCGA-EE-A2MS-06 8 128751083 128751083 C T MYC Missense_Mutation p.S207L 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 8 131826339 131826339 G T ADCY8 Missense_Mutation p.F963L 0.29 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MS-06 8 131861930 131861930 C T ADCY8 Nonsense_Mutation p.W777* 0.57 TCGA-EE-A2MS-06 8 131964149 131964149 G A ADCY8 Silent p.F402F 0.30 TCGA-EE-A2MS-06 8 132051766 132051766 C T ADCY8 Missense_Mutation p.G272S 0.22 tolerated(0.23) probably_damaging(0.997) TCGA-EE-A2MS-06 8 134060148 134060148 C T SLA Silent p.K133K 0.31 TCGA-EE-A2MS-06 8 135614441 135614441 G A ZFAT Silent p.I507I 0.50 TCGA-EE-A2MS-06 8 139190783 139190783 G A FAM135B Silent p.L342L 0.30 TCGA-EE-A2MS-06 8 139263231 139263231 A C FAM135B Missense_Mutation p.M132R 0.52 deleterious(0.01) benign(0.356) TCGA-EE-A2MS-06 8 139616993 139616993 C T COL22A1 Missense_Mutation p.G1375E 0.22 unknown(0) TCGA-EE-A2MS-06 8 139628273 139628273 G A COL22A1 Missense_Mutation p.P1299S 0.62 unknown(0) TCGA-EE-A2MS-06 8 140630829 140630829 C T KCNK9 Missense_Mutation p.G266E 0.32 tolerated(0.59) benign(0.12) TCGA-EE-A2MS-06 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.56 tolerated(0.06) benign(0.052) TCGA-EE-A2MS-06 8 141297807 141297807 G A TRAPPC9 Silent p.F725F 0.24 TCGA-EE-A2MS-06 8 142151412 142151412 C T DENND3 Silent p.D124D 0.46 TCGA-EE-A2MS-06 8 142190863 142190863 G A DENND3 Missense_Mutation p.E872K 0.35 tolerated(1) benign(0) TCGA-EE-A2MS-06 8 142446109 142446109 C T PTP4A3 3'Flank 0.38 TCGA-EE-A2MS-06 8 142458068 142458068 G A SNORD5 3'Flank 0.48 TCGA-EE-A2MS-06 8 144621226 144621226 G A ZC3H3 Missense_Mutation p.P104L 0.53 deleterious(0.04) possibly_damaging(0.632) TCGA-EE-A2MS-06 8 144900408 144900408 G A PUF60 Silent p.A186A 0.44 TCGA-EE-A2MS-06 8 144900409 144900409 G A PUF60 Missense_Mutation p.A186V 0.44 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A2MS-06 8 144940303 144940303 G A EPPK1 Silent p.N2373N 0.09 TCGA-EE-A2MS-06 8 144940509 144940509 G A EPPK1 Missense_Mutation p.R2305C 0.12 probably_damaging(0.996) TCGA-EE-A2MS-06 8 144947005 144947005 C T EPPK1 Silent p.K139K 0.20 TCGA-EE-A2MS-06 8 144992838 144992838 G A PLEC Silent p.A3854A 0.63 TCGA-EE-A2MS-06 8 144994613 144994613 G A PLEC Missense_Mutation p.P3263S 0.44 probably_damaging(0.936) TCGA-EE-A2MS-06 8 145094953 145094953 G A SPATC1 Missense_Mutation p.G119S 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MS-06 8 145094954 145094954 G A SPATC1 Missense_Mutation p.G119D 0.30 tolerated(0.07) probably_damaging(1) TCGA-EE-A2MS-06 8 145112553 145112553 G A OPLAH Missense_Mutation p.P407L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 145268119 145268119 C T MROH1 Intron 0.40 TCGA-EE-A2MS-06 8 145756216 145756216 G A ARHGAP39 Missense_Mutation p.P1007L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 8 145773436 145773436 G A ARHGAP39 Missense_Mutation p.P345L 0.32 tolerated(0.08) probably_damaging(0.987) TCGA-EE-A2MS-06 8 145999287 145999287 G A ZNF34 Silent p.S349S 0.30 TCGA-EE-A2MS-06 8 17053128 17053128 C G ZDHHC2 Missense_Mutation p.S123C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 8 17063187 17063187 C T ZDHHC2 Missense_Mutation p.S167L 0.41 deleterious(0) probably_damaging(0.92) TCGA-EE-A2MS-06 8 17218671 17218671 G A MTMR7 Silent p.L141L 0.42 TCGA-EE-A2MS-06 8 18413763 18413763 C T PSD3 Missense_Mutation p.D962N 0.58 deleterious(0.02) benign(0.309) TCGA-EE-A2MS-06 8 18413764 18413764 C T PSD3 Silent p.K961K 0.55 TCGA-EE-A2MS-06 8 19811737 19811737 C T LPL Silent p.S216S 0.67 TCGA-EE-A2MS-06 8 20022405 20022405 G A SLC18A1 Silent p.T330T 0.55 TCGA-EE-A2MS-06 8 22900656 22900656 G A TNFRSF10B Missense_Mutation p.P82L 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A2MS-06 8 24199169 24199169 G A ADAM28 Missense_Mutation p.G577R 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 24304708 24304708 G A ADAM7 Missense_Mutation p.E56K 0.51 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MS-06 8 24775312 24775312 G A NEFM Silent p.V648V 0.37 TCGA-EE-A2MS-06 8 25190120 25190120 T G DOCK5 Missense_Mutation p.F668C 0.36 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MS-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.45 deleterious(0.01) benign(0.01) TCGA-EE-A2MS-06 8 26238260 26238260 C T BNIP3L 5'Flank 0.50 TCGA-EE-A2MS-06 8 27455688 27455688 G A CLU 3'UTR 0.64 TCGA-EE-A2MS-06 8 27461907 27461907 C G CLU Missense_Mutation p.D279H 0.60 tolerated(0.05) benign(0.029) TCGA-EE-A2MS-06 8 27528498 27528498 G A SCARA3 Missense_Mutation p.G484E 0.19 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MS-06 8 2820090 2820090 C T CSMD1 Missense_Mutation p.E3176K 0.83 benign(0.027) TCGA-EE-A2MS-06 8 29025003 29025003 G A KIF13B Nonsense_Mutation p.R349* 0.25 TCGA-EE-A2MS-06 8 30694351 30694351 C T TEX15 Missense_Mutation p.R2767Q 0.29 tolerated(0.05) benign(0.073) TCGA-EE-A2MS-06 8 30854142 30854142 C T PURG Silent p.Q312Q 0.28 TCGA-EE-A2MS-06 8 32617769 32617769 C T NRG1 Silent p.I376I 0.30 TCGA-EE-A2MS-06 8 33367348 33367348 G A TTI2 Silent p.P250P 0.71 TCGA-EE-A2MS-06 8 35631824 35631824 G A UNC5D Missense_Mutation p.R829Q 0.62 tolerated(0.26) benign(0.229) TCGA-EE-A2MS-06 8 37729977 37729977 G A RAB11FIP1 Silent p.V781V 0.69 TCGA-EE-A2MS-06 8 37967969 37967969 C T ASH2L Silent p.F158F 0.80 TCGA-EE-A2MS-06 8 43054585 43054585 C T HGSNAT Missense_Mutation p.P594L 0.55 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MS-06 8 51306823 51306823 G A SNTG1 Missense_Mutation p.E9K 0.35 tolerated(1) benign(0.002) TCGA-EE-A2MS-06 8 51415335 51415335 C T SNTG1 Intron 0.47 TCGA-EE-A2MS-06 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 8 52321654 52321654 G A PXDNL Missense_Mutation p.P844S 0.45 tolerated(0.33) possibly_damaging(0.714) TCGA-EE-A2MS-06 8 52321655 52321655 G A PXDNL Silent p.F843F 0.41 TCGA-EE-A2MS-06 8 52370068 52370068 G A PXDNL Silent p.S324S 0.41 TCGA-EE-A2MS-06 8 52370162 52370162 C T PXDNL Missense_Mutation p.R293Q 0.52 tolerated(1) benign(0.007) TCGA-EE-A2MS-06 8 53079532 53079532 C T ST18 Missense_Mutation p.E362K 0.31 deleterious(0.03) possibly_damaging(0.721) TCGA-EE-A2MS-06 8 55534779 55534779 C T RP1 Missense_Mutation p.P240S 0.53 tolerated(0.09) benign(0.125) TCGA-EE-A2MS-06 8 55537382 55537382 C T RP1 Missense_Mutation p.P314S 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MS-06 8 55538384 55538384 G A RP1 Missense_Mutation p.E648K 0.34 deleterious(0.04) benign(0.141) TCGA-EE-A2MS-06 8 55538600 55538600 C T RP1 Missense_Mutation p.P720S 0.45 tolerated(0.76) benign(0.015) TCGA-EE-A2MS-06 8 55538772 55538772 G A RP1 Missense_Mutation p.R777K 0.30 tolerated(0.31) benign(0.051) TCGA-EE-A2MS-06 8 55540222 55540222 G A RP1 Silent p.E1260E 0.56 TCGA-EE-A2MS-06 8 56435966 56435966 G A XKR4 Nonsense_Mutation p.W378* 0.48 TCGA-EE-A2MS-06 8 57358378 57358378 G A PENK Silent p.F45F 0.37 TCGA-EE-A2MS-06 8 62371063 62371063 G A CLVS1 Silent p.S313S 0.51 TCGA-EE-A2MS-06 8 6338320 6338320 C T MCPH1 Missense_Mutation p.L687F 0.59 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MS-06 8 6338321 6338321 T A MCPH1 Missense_Mutation p.L687H 0.61 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 8 65527671 65527671 G A CYP7B1 Silent p.D323D 0.38 TCGA-EE-A2MS-06 8 65527784 65527784 G A CYP7B1 Missense_Mutation p.H286Y 0.35 deleterious(0.01) benign(0.284) TCGA-EE-A2MS-06 8 67342116 67342116 G T RRS1 Missense_Mutation p.K250N 0.24 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A2MS-06 8 68950441 68950441 C T PREX2 Silent p.V251V 0.40 TCGA-EE-A2MS-06 8 68984784 68984784 G A PREX2 Silent p.L516L 0.51 TCGA-EE-A2MS-06 8 72127689 72127689 C T EYA1 Silent p.A510A 0.49 TCGA-EE-A2MS-06 8 72234092 72234092 G A EYA1 Missense_Mutation p.P99S 0.27 tolerated(1) possibly_damaging(0.868) TCGA-EE-A2MS-06 8 72975757 72975757 G A TRPA1 Missense_Mutation p.P201L 0.24 deleterious(0) possibly_damaging(0.801) TCGA-EE-A2MS-06 8 73480030 73480030 C T KCNB2 Missense_Mutation p.P21S 0.47 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A2MS-06 8 73848969 73848969 G A KCNB2 Missense_Mutation p.R460Q 0.53 tolerated(0.07) possibly_damaging(0.611) TCGA-EE-A2MS-06 8 73849944 73849944 C T KCNB2 Missense_Mutation p.S785F 0.31 deleterious_low_confidence(0.04) benign(0.097) TCGA-EE-A2MS-06 8 73849945 73849945 C T KCNB2 Silent p.S785S 0.33 TCGA-EE-A2MS-06 8 76470901 76470901 T A HNF4G Missense_Mutation p.D284E 0.48 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 8 76470902 76470902 C A HNF4G Missense_Mutation p.P285T 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 8 76470903 76470903 C T HNF4G Missense_Mutation p.P285L 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 8 77690488 77690488 T A ZFHX4 Nonsense_Mutation p.Y1046* 0.54 TCGA-EE-A2MS-06 8 77766907 77766907 G A ZFHX4 Missense_Mutation p.D2584N 0.47 benign(0.178) TCGA-EE-A2MS-06 8 80567214 80567214 G A STMN2 Missense_Mutation p.E133K 0.46 deleterious(0.04) possibly_damaging(0.873) TCGA-EE-A2MS-06 8 81733661 81733661 G A ZNF704 Missense_Mutation p.L57F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MS-06 8 86253846 86253846 C T CA1 Missense_Mutation p.G7R 0.24 deleterious(0.02) benign(0.269) TCGA-EE-A2MS-06 8 89086840 89086840 G A MMP16 Silent p.F405F 0.43 TCGA-EE-A2MS-06 8 89180047 89180047 A C MMP16 Missense_Mutation p.I187S 0.22 tolerated(0.17) probably_damaging(0.973) TCGA-EE-A2MS-06 8 89198734 89198734 C T MMP16 Silent p.Q125Q 0.34 TCGA-EE-A2MS-06 8 95390826 95390826 G A RAD54B Missense_Mutation p.P762S 0.33 tolerated(0.69) benign(0.004) TCGA-EE-A2MS-06 8 95777443 95777443 C T DPY19L4 Silent p.S301S 0.54 TCGA-EE-A2MS-06 8 97247852 97247852 G A UQCRB 5'Flank 0.64 TCGA-EE-A2MS-06 8 99101378 99101378 G A C8orf47 Missense_Mutation p.G45R 0.48 tolerated(0.06) probably_damaging(0.991) TCGA-EE-A2MS-06 9 101498825 101498825 G A ANKS6 Silent p.A864A 0.21 TCGA-EE-A2MS-06 9 101748166 101748166 G A COL15A1 Silent p.E140E 0.28 TCGA-EE-A2MS-06 9 101787237 101787237 G A COL15A1 Missense_Mutation p.G646R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 9 101810096 101810096 G A COL15A1 Missense_Mutation p.G903E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 9 102609826 102609826 C T NR4A3 Missense_Mutation p.S532F 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 9 103014671 103014671 C T INVS Silent p.F395F 0.47 TCGA-EE-A2MS-06 9 103088589 103088589 G A TEX10 Silent p.H658H 0.38 TCGA-EE-A2MS-06 9 104032177 104032177 G A LPPR1 Missense_Mutation p.G27R 0.27 deleterious(0.01) possibly_damaging(0.708) TCGA-EE-A2MS-06 9 104432633 104432633 G A GRIN3A Silent p.I687I 0.44 TCGA-EE-A2MS-06 9 107331863 107331863 G A OR13C8 Missense_Mutation p.G139S 0.30 tolerated(0.48) benign(0.033) TCGA-EE-A2MS-06 9 107380476 107380476 C T OR13C9 Missense_Mutation p.E4K 0.47 tolerated(0.51) benign(0.001) TCGA-EE-A2MS-06 9 107456939 107456939 C T OR13D1 Silent p.I79I 0.40 TCGA-EE-A2MS-06 9 107555133 107555133 C T ABCA1 Silent p.R1897R 0.27 TCGA-EE-A2MS-06 9 108425076 108425076 C T TAL2 Missense_Mutation p.S100L 0.58 deleterious(0.04) benign(0.002) TCGA-EE-A2MS-06 9 109689644 109689644 C T ZNF462 Missense_Mutation p.P1151S 0.42 probably_damaging(0.996) TCGA-EE-A2MS-06 9 113170290 113170290 G A SVEP1 Silent p.L2530L 0.28 TCGA-EE-A2MS-06 9 113241924 113241924 C T SVEP1 Silent p.L826L 0.36 TCGA-EE-A2MS-06 9 113431160 113431160 C T MUSK 5'UTR 0.38 TCGA-EE-A2MS-06 9 113547100 113547100 C T MUSK Missense_Mutation p.P464S 0.40 deleterious(0.04) benign(0.002) TCGA-EE-A2MS-06 9 114090518 114090518 G A OR2K2 Missense_Mutation p.L66F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 9 114304365 114304365 C T ZNF483 Missense_Mutation p.H384Y 0.36 tolerated(0.18) benign(0.002) TCGA-EE-A2MS-06 9 115336479 115336479 C T KIAA1958 Missense_Mutation p.S40F 0.39 deleterious(0) benign(0.069) TCGA-EE-A2MS-06 9 115652848 115652848 C T SLC46A2 Silent p.A38A 0.36 TCGA-EE-A2MS-06 9 115811738 115811738 C T ZFP37 Missense_Mutation p.E85K 0.31 deleterious(0.05) benign(0.017) TCGA-EE-A2MS-06 9 115931882 115931882 C T FKBP15 Missense_Mutation p.R1036K 0.38 tolerated_low_confidence(0.19) benign(0.008) TCGA-EE-A2MS-06 9 116191697 116191697 C T C9orf43 3'UTR 0.36 TCGA-EE-A2MS-06 9 116269610 116269610 C T RGS3 Missense_Mutation p.P377S 0.23 deleterious(0) probably_damaging(0.972) TCGA-EE-A2MS-06 9 116812253 116812253 C T ZNF618 Nonsense_Mutation p.Q798* 0.43 TCGA-EE-A2MS-06 9 117062944 117062944 C T COL27A1 Missense_Mutation p.P1560S 0.35 unknown(0) TCGA-EE-A2MS-06 9 117552732 117552732 C T TNFSF15 Silent p.%3D 0.35 TCGA-EE-A2MS-06 9 117682 117682 G A FOXD4 Silent p.P146P 0.31 TCGA-EE-A2MS-06 9 117838849 117838849 C T TNC Missense_Mutation p.D894N 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MS-06 9 118997498 118997498 C T PAPPA Missense_Mutation p.P772S 0.45 tolerated(0.69) possibly_damaging(0.641) TCGA-EE-A2MS-06 9 119187793 119187793 G A ASTN2 3'UTR 0.62 TCGA-EE-A2MS-06 9 120475859 120475859 G A TLR4 Missense_Mutation p.E485K 0.38 tolerated(0.05) benign(0.001) TCGA-EE-A2MS-06 9 121929812 121929812 G A BRINP1 Silent p.F612F 0.22 TCGA-EE-A2MS-06 9 122011339 122011339 C T BRINP1 Missense_Mutation p.R103K 0.19 deleterious(0.04) benign(0.042) TCGA-EE-A2MS-06 9 123620471 123620471 G A PHF19 Silent p.C498C 0.32 TCGA-EE-A2MS-06 9 124110310 124110310 G A AL161784.1 Missense_Mutation p.R27Q 0.21 benign(0.412) TCGA-EE-A2MS-06 9 125239572 125239572 G A OR1J1 Silent p.L212L 0.37 TCGA-EE-A2MS-06 9 125240166 125240166 G A OR1J1 Missense_Mutation p.L14F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-EE-A2MS-06 9 125240167 125240167 G A OR1J1 Silent p.L13L 0.43 TCGA-EE-A2MS-06 9 125273186 125273186 C T OR1J2 Silent p.L36L 0.22 TCGA-EE-A2MS-06 9 125315494 125315494 G A OR1N2 Missense_Mutation p.G16R 0.34 tolerated(0.64) probably_damaging(0.999) TCGA-EE-A2MS-06 9 125316188 125316188 C T OR1N2 Missense_Mutation p.S247F 0.34 deleterious(0) possibly_damaging(0.857) TCGA-EE-A2MS-06 9 125330481 125330481 G A OR1L8 Silent p.T92T 0.35 TCGA-EE-A2MS-06 9 125512429 125512429 G A OR1L6 Silent p.Q101Q 0.23 TCGA-EE-A2MS-06 9 125551739 125551739 G A OR5C1 Silent p.R176R 0.37 TCGA-EE-A2MS-06 9 126132826 126132826 G A CRB2 Nonsense_Mutation p.W498* 0.60 TCGA-EE-A2MS-06 9 126133596 126133596 C T CRB2 Silent p.L725L 0.26 TCGA-EE-A2MS-06 9 126531808 126531808 G A DENND1A Missense_Mutation p.P56L 0.22 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MS-06 9 127119142 127119142 T C PSMB7 Missense_Mutation p.N208S 0.30 tolerated(0.06) benign(0.21) TCGA-EE-A2MS-06 9 127262369 127262369 C A NR5A1 Missense_Mutation p.E290D 0.27 deleterious(0) benign(0.148) TCGA-EE-A2MS-06 9 127298174 127298174 G A NR6A1 Silent p.S354S 0.24 TCGA-EE-A2MS-06 9 127298175 127298175 G A NR6A1 Missense_Mutation p.S354F 0.24 deleterious(0) probably_damaging(0.958) TCGA-EE-A2MS-06 9 127300562 127300562 C T NR6A1 Silent p.R211R 0.58 TCGA-EE-A2MS-06 9 127316621 127316621 C T NR6A1 Missense_Mutation p.G124E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 9 127561572 127561572 G A OLFML2A Silent p.K157K 0.51 TCGA-EE-A2MS-06 9 127561573 127561573 G A OLFML2A Missense_Mutation p.A158T 0.51 tolerated(0.99) benign(0.021) TCGA-EE-A2MS-06 9 127975692 127975692 C T RABEPK Silent p.P85P 0.26 TCGA-EE-A2MS-06 9 129453256 129453256 C T LMX1B Silent p.F156F 0.38 TCGA-EE-A2MS-06 9 130700157 130700157 C T DPM2 5'UTR 0.25 TCGA-EE-A2MS-06 9 130981516 130981516 G A DNM1 Missense_Mutation p.E192K 0.33 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A2MS-06 9 131222920 131222920 C T ODF2 Intron 0.48 TCGA-EE-A2MS-06 9 131254717 131254717 C T ODF2 Missense_Mutation p.P517S 0.32 tolerated(0.41) benign(0.018) TCGA-EE-A2MS-06 9 131476941 131476941 C T PKN3 Missense_Mutation p.P528S 0.23 tolerated(0.2) possibly_damaging(0.543) TCGA-EE-A2MS-06 9 131830564 131830564 C T FAM73B Missense_Mutation p.L453F 0.24 tolerated(0.15) probably_damaging(0.952) TCGA-EE-A2MS-06 9 131891299 131891299 G A PPP2R4 Silent p.L84L 0.26 TCGA-EE-A2MS-06 9 134073810 134073810 C T NUP214 Silent p.S1643S 0.22 TCGA-EE-A2MS-06 9 134321978 134321978 C T PRRC2B Silent p.F268F 0.53 TCGA-EE-A2MS-06 9 134366870 134366870 C T PRRC2B Missense_Mutation p.S2095F 0.28 deleterious(0) probably_damaging(0.954) TCGA-EE-A2MS-06 9 135702305 135702305 G A AK8 Silent p.P231P 0.27 TCGA-EE-A2MS-06 9 135985089 135985089 G A RALGDS Missense_Mutation p.L170F 0.27 tolerated(0.2) possibly_damaging(0.608) TCGA-EE-A2MS-06 9 135985090 135985090 G A RALGDS Silent p.A169A 0.27 TCGA-EE-A2MS-06 9 136279660 136279660 G A REXO4 Intron 0.40 TCGA-EE-A2MS-06 9 136389876 136389876 G A TMEM8C Missense_Mutation p.H31Y 0.22 tolerated(0.2) benign(0.015) TCGA-EE-A2MS-06 9 136405855 136405855 G A ADAMTSL2 Missense_Mutation p.G183E 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 9 137582856 137582856 G A COL5A1 Missense_Mutation p.G70S 0.23 benign(0.376) TCGA-EE-A2MS-06 9 137707430 137707430 G A COL5A1 Silent p.V1341V 0.33 TCGA-EE-A2MS-06 9 137707431 137707431 G A COL5A1 Missense_Mutation p.G1342S 0.33 unknown(0) TCGA-EE-A2MS-06 9 138670594 138670594 G A KCNT1 Silent p.K885K 0.22 TCGA-EE-A2MS-06 9 138714513 138714513 G A CAMSAP1 Missense_Mutation p.T665I 0.55 deleterious(0.05) benign(0.027) TCGA-EE-A2MS-06 9 139250996 139250996 G A GPSM1 Silent p.K605K 0.26 TCGA-EE-A2MS-06 9 139733691 139733691 C T RABL6 Missense_Mutation p.S505L 0.60 tolerated_low_confidence(0.33) benign(0.001) TCGA-EE-A2MS-06 9 139741099 139741099 C T C9orf172 Silent p.L745L 0.33 TCGA-EE-A2MS-06 9 139820209 139820209 C T TRAF2 Silent p.S454S 0.39 TCGA-EE-A2MS-06 9 140058408 140058408 G A GRIN1 Intron 0.21 TCGA-EE-A2MS-06 9 140392681 140392681 G A PNPLA7 Missense_Mutation p.P592S 0.65 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MS-06 9 140809148 140809148 C T CACNA1B Missense_Mutation p.P222L 0.21 deleterious(0) benign(0.365) TCGA-EE-A2MS-06 9 140964210 140964210 G A CACNA1B Missense_Mutation p.E1557K 0.29 tolerated(0.59) benign(0.049) TCGA-EE-A2MS-06 9 14313580 14313580 T A NFIB 5'UTR 0.53 TCGA-EE-A2MS-06 9 15578922 15578922 G A CCDC171 Missense_Mutation p.E85K 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 9 18680342 18680342 C T ADAMTSL1 Missense_Mutation p.S390F 0.59 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A2MS-06 9 19299242 19299242 G C DENND4C Missense_Mutation p.A375P 0.60 deleterious(0.05) possibly_damaging(0.776) TCGA-EE-A2MS-06 9 19786550 19786550 C T SLC24A2 Silent p.K105K 0.61 TCGA-EE-A2MS-06 9 21140978 21140978 C T IFNW1 3'UTR 0.55 TCGA-EE-A2MS-06 9 21334327 21334327 G A KLHL9 Silent p.L178L 0.67 TCGA-EE-A2MS-06 9 27228234 27228234 G A TEK Silent p.E1077E 0.45 TCGA-EE-A2MS-06 9 32634945 32634945 C T TAF1L Silent p.E211E 0.34 TCGA-EE-A2MS-06 9 32634978 32634978 C T TAF1L Silent p.V200V 0.47 TCGA-EE-A2MS-06 9 34710039 34710039 G A CCL21 Missense_Mutation p.L9F 0.60 tolerated(0.07) benign(0.22) TCGA-EE-A2MS-06 9 35398937 35398937 C T UNC13B Missense_Mutation p.R1245W 0.22 deleterious(0) possibly_damaging(0.821) TCGA-EE-A2MS-06 9 35689740 35689740 G C TPM2 Silent p.A25A 0.46 TCGA-EE-A2MS-06 9 35800027 35800027 C T NPR2 Silent p.L332L 0.33 TCGA-EE-A2MS-06 9 35813502 35813502 G A HINT2 Silent p.F89F 0.45 TCGA-EE-A2MS-06 9 36198988 36198988 C T CLTA Missense_Mutation p.P90S 0.37 deleterious(0.03) benign(0.034) TCGA-EE-A2MS-06 9 36390467 36390467 G A RNF38 Silent p.F53F 0.42 TCGA-EE-A2MS-06 9 37777687 37777687 C T TRMT10B Missense_Mutation p.R312W 0.33 tolerated(0.12) benign(0.009) TCGA-EE-A2MS-06 9 39085896 39085896 G A CNTNAP3 Intron 0.40 TCGA-EE-A2MS-06 9 39361075 39361075 C T SPATA31A1 Missense_Mutation p.P1105S 0.33 tolerated(0.32) benign(0.069) TCGA-EE-A2MS-06 9 5463090 5463090 G A CD274 Silent p.E217E 0.64 TCGA-EE-A2MS-06 9 72333229 72333229 G A PTAR1 3'UTR 0.50 TCGA-EE-A2MS-06 9 73424915 73424915 C T TRPM3 Intron 0.43 TCGA-EE-A2MS-06 9 75387345 75387345 C T TMC1 Missense_Mutation p.S253F 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MS-06 9 75775776 75775776 G A ANXA1 Missense_Mutation p.E148K 0.39 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2MS-06 9 77282800 77282800 C T RORB Missense_Mutation p.A365V 0.34 tolerated(0.51) benign(0.223) TCGA-EE-A2MS-06 9 77370337 77370337 C T TRPM6 Missense_Mutation p.G1613E 0.32 tolerated_low_confidence(0.14) benign(0.005) TCGA-EE-A2MS-06 9 77442714 77442714 G A TRPM6 Missense_Mutation p.S274F 0.33 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MS-06 9 77613660 77613660 G A C9orf41 Missense_Mutation p.P255L 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 9 78638703 78638703 G A PCSK5 Missense_Mutation p.G154E 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 9 78638706 78638706 C T PCSK5 Missense_Mutation p.A155V 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A2MS-06 9 78953354 78953354 C T PCSK5 Nonsense_Mutation p.Q1626* 0.26 TCGA-EE-A2MS-06 9 79321182 79321182 G A PRUNE2 Missense_Mutation p.S2003L 0.43 tolerated(0.14) benign(0.037) TCGA-EE-A2MS-06 9 79325873 79325873 G A PRUNE2 Silent p.S439S 0.39 TCGA-EE-A2MS-06 9 79959074 79959074 C T VPS13A Silent p.I2344I 0.31 TCGA-EE-A2MS-06 9 82321672 82321672 C T TLE4 Missense_Mutation p.S265F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MS-06 9 82324572 82324572 C T TLE4 Missense_Mutation p.P433L 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A2MS-06 9 84609301 84609301 G A SPATA31D1 Missense_Mutation p.G1306R 0.50 tolerated(0.11) probably_damaging(0.998) TCGA-EE-A2MS-06 9 8501060 8501060 C T PTPRD Splice_Site p.X608_splice 0.50 TCGA-EE-A2MS-06 9 86354623 86354623 G A GKAP1 Nonsense_Mutation p.Q364* 0.25 TCGA-EE-A2MS-06 9 86504034 86504034 A C KIF27 Missense_Mutation p.D648E 0.40 tolerated(0.91) benign(0.001) TCGA-EE-A2MS-06 9 90586150 90586150 C T CDK20 Missense_Mutation p.R97K 0.28 tolerated(0.88) benign(0.003) TCGA-EE-A2MS-06 9 91606022 91606022 G A C9orf47 Missense_Mutation p.D38N 0.33 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-EE-A2MS-06 9 91931342 91931342 G A CKS2 3'UTR 0.36 TCGA-EE-A2MS-06 9 91949602 91949602 C T SECISBP2 Missense_Mutation p.P349L 0.33 tolerated(0.1) benign(0.016) TCGA-EE-A2MS-06 9 91961898 91961898 C T SECISBP2 Missense_Mutation p.P513S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 9 93650881 93650881 G A SYK Missense_Mutation p.D603N 0.36 tolerated(0.44) benign(0.006) TCGA-EE-A2MS-06 9 94485891 94485891 C T ROR2 3'UTR 0.43 TCGA-EE-A2MS-06 9 94495542 94495542 C T ROR2 Missense_Mutation p.E267K 0.67 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MS-06 9 95776252 95776252 G A FGD3 Missense_Mutation p.G385D 0.27 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MS-06 9 95782638 95782638 G A FGD3 Missense_Mutation p.E476K 0.36 deleterious(0.02) benign(0.306) TCGA-EE-A2MS-06 9 96002178 96002178 G A WNK2 Missense_Mutation p.G488R 0.64 unknown(0) TCGA-EE-A2MS-06 9 96002179 96002179 G A WNK2 Missense_Mutation p.G488E 0.71 unknown(0) TCGA-EE-A2MS-06 9 96261096 96261096 C T FAM120A Nonsense_Mutation p.R320* 0.41 TCGA-EE-A2MS-06 9 96429433 96429433 C T PHF2 Silent p.V753V 0.45 TCGA-EE-A2MS-06 9 97083470 97083470 G A NUTM2F Missense_Mutation p.S296L 0.56 tolerated(0.45) benign(0.007) TCGA-EE-A2MS-06 9 99489118 99489118 C T RP11-535M15.2 RNA 0.68 TCGA-EE-A2MS-06 X 102529337 102529337 C T TCEAL5 Missense_Mutation p.G52E 0.85 tolerated(0.18) probably_damaging(0.982) TCGA-EE-A2MS-06 X 104440255 104440255 C T IL1RAPL2 Missense_Mutation p.R61C 0.91 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 X 105450200 105450200 G A MUM1L1 Missense_Mutation p.E259K 0.50 tolerated(0.19) benign(0.001) TCGA-EE-A2MS-06 X 106390975 106390975 G A NUP62CL Intron 0.83 TCGA-EE-A2MS-06 X 107415711 107415711 G A COL4A6 Missense_Mutation p.P1065S 0.42 probably_damaging(0.93) TCGA-EE-A2MS-06 X 107424153 107424153 C T COL4A6 Missense_Mutation p.G667E 0.92 probably_damaging(1) TCGA-EE-A2MS-06 X 107869489 107869489 A C COL4A5 Missense_Mutation p.Q1052H 0.72 unknown(0) TCGA-EE-A2MS-06 X 108638692 108638692 G A GUCY2F Missense_Mutation p.P768S 0.82 deleterious(0.02) benign(0.185) TCGA-EE-A2MS-06 X 108718802 108718802 C T GUCY2F Missense_Mutation p.G122R 0.49 deleterious(0) probably_damaging(0.942) TCGA-EE-A2MS-06 X 109964648 109964648 G A CHRDL1 Missense_Mutation p.R138W 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 X 111097282 111097282 C T TRPC5 Missense_Mutation p.G318D 0.80 deleterious(0.03) benign(0.354) TCGA-EE-A2MS-06 X 111195330 111195330 C T TRPC5 Missense_Mutation p.E107K 0.90 deleterious(0) probably_damaging(0.92) TCGA-EE-A2MS-06 X 114245314 114245314 G A IL13RA2 Missense_Mutation p.P200L 0.87 deleterious(0.03) possibly_damaging(0.848) TCGA-EE-A2MS-06 X 115585494 115585494 G A SLC6A14 Silent p.T430T 0.82 TCGA-EE-A2MS-06 X 117680003 117680003 C T DOCK11 Missense_Mutation p.S161F 0.83 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2MS-06 X 118971902 118971902 G A UPF3B Missense_Mutation p.R374C 0.84 tolerated(0.06) probably_damaging(0.982) TCGA-EE-A2MS-06 X 118971903 118971903 G A UPF3B Silent p.R373R 0.84 TCGA-EE-A2MS-06 X 119680416 119680416 G A CUL4B Missense_Mutation p.H296Y 0.44 tolerated(0.34) benign(0.259) TCGA-EE-A2MS-06 X 119760717 119760717 G A C1GALT1C1 Missense_Mutation p.S102F 0.87 deleterious(0) probably_damaging(0.952) TCGA-EE-A2MS-06 X 120008958 120008958 C T CT47B1 Silent p.L189L 0.46 TCGA-EE-A2MS-06 X 122538605 122538605 G A GRIA3 Missense_Mutation p.G447E 0.92 deleterious(0) possibly_damaging(0.876) TCGA-EE-A2MS-06 X 122551351 122551351 G A GRIA3 Missense_Mutation p.M533I 0.48 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MS-06 X 123517540 123517540 G A TENM1 Missense_Mutation p.S2414F 0.41 deleterious(0.01) benign(0.106) TCGA-EE-A2MS-06 X 125685897 125685897 G A DCAF12L1 Missense_Mutation p.A232V 0.83 tolerated(0.13) benign(0.015) TCGA-EE-A2MS-06 X 12735780 12735780 C T FRMPD4 Silent p.P945P 0.33 TCGA-EE-A2MS-06 X 12735781 12735781 C T FRMPD4 Missense_Mutation p.L946F 0.32 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-EE-A2MS-06 X 129063461 129063461 C T UTP14A Silent p.P731P 0.25 TCGA-EE-A2MS-06 X 130408083 130408083 C T IGSF1 Nonsense_Mutation p.W1288* 0.46 TCGA-EE-A2MS-06 X 130412483 130412483 C T IGSF1 Missense_Mutation p.E670K 0.44 tolerated(0.11) benign(0.113) TCGA-EE-A2MS-06 X 130415714 130415714 C T IGSF1 Missense_Mutation p.C484Y 0.98 deleterious(0.02) benign(0.05) TCGA-EE-A2MS-06 X 130415851 130415851 G A IGSF1 Silent p.T438T 0.97 TCGA-EE-A2MS-06 X 130678432 130678432 C T OR13H1 Missense_Mutation p.P129S 0.87 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MS-06 X 132887940 132887940 C T GPC3 Missense_Mutation p.A201T 0.84 tolerated(0.29) possibly_damaging(0.457) TCGA-EE-A2MS-06 X 134990381 134990381 G A SAGE1 Silent p.R431R 0.84 TCGA-EE-A2MS-06 X 135428096 135428096 G A GPR112 Missense_Mutation p.G744E 0.92 tolerated(0.21) benign(0.021) TCGA-EE-A2MS-06 X 135618348 135618348 G A VGLL1 Missense_Mutation p.E57K 0.46 tolerated(0.67) benign(0.021) TCGA-EE-A2MS-06 X 140992763 140992763 G A MAGEC1 5'UTR 0.84 TCGA-EE-A2MS-06 X 140993841 140993841 C T MAGEC1 Silent p.S217S 0.49 TCGA-EE-A2MS-06 X 140994321 140994321 G A MAGEC1 Silent p.G377G 0.88 TCGA-EE-A2MS-06 X 140994883 140994883 C T MAGEC1 Missense_Mutation p.P565S 0.80 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-EE-A2MS-06 X 140995456 140995456 C T MAGEC1 Missense_Mutation p.P756S 0.82 tolerated_low_confidence(0.84) possibly_damaging(0.641) TCGA-EE-A2MS-06 X 140995510 140995510 C T MAGEC1 Missense_Mutation p.P774S 0.83 tolerated_low_confidence(0.19) possibly_damaging(0.641) TCGA-EE-A2MS-06 X 141290737 141290737 G A MAGEC2 Missense_Mutation p.A346V 0.41 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A2MS-06 X 141290915 141290915 G A MAGEC2 Missense_Mutation p.R287W 0.39 deleterious(0.04) benign(0.042) TCGA-EE-A2MS-06 X 142717156 142717156 G A SLITRK4 Missense_Mutation p.P590L 0.38 tolerated(0.33) benign(0) TCGA-EE-A2MS-06 X 142967459 142967459 G A UBE2NL Missense_Mutation p.R86K 0.92 deleterious(0.04) benign(0.398) TCGA-EE-A2MS-06 X 150828184 150828184 G A PASD1 Splice_Site p.X240_splice 0.40 TCGA-EE-A2MS-06 X 150911103 150911103 G A CNGA2 Missense_Mutation p.R193Q 0.84 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A2MS-06 X 150912737 150912737 G A CNGA2 Missense_Mutation p.E588K 0.81 tolerated(0.85) benign(0) TCGA-EE-A2MS-06 X 151303846 151303846 G A MAGEA10 Missense_Mutation p.P83S 0.87 tolerated(0.17) benign(0.223) TCGA-EE-A2MS-06 X 151870288 151870288 G A MAGEA6 3'UTR 0.93 TCGA-EE-A2MS-06 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.46 TCGA-EE-A2MS-06 X 153056285 153056285 G A IDH3G Missense_Mutation p.P35S 0.82 tolerated(0.55) benign(0) TCGA-EE-A2MS-06 X 153524197 153524197 C T TKTL1 5'UTR 0.39 TCGA-EE-A2MS-06 X 1551204 1551204 G A ASMTL Missense_Mutation p.S156F 0.79 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MS-06 X 15534347 15534347 G A BMX Nonsense_Mutation p.W146* 0.83 TCGA-EE-A2MS-06 X 16775304 16775304 C T SYAP1 Missense_Mutation p.T268I 0.84 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A2MS-06 X 17744272 17744272 C T NHS Silent p.F661F 0.88 TCGA-EE-A2MS-06 X 18822164 18822164 C T PPEF1 Missense_Mutation p.P407L 0.53 tolerated(0.09) benign(0.364) TCGA-EE-A2MS-06 X 21627398 21627398 G A CNKSR2 Silent p.Q785Q 0.85 TCGA-EE-A2MS-06 X 21761934 21761934 C T SMPX Missense_Mutation p.M22I 0.40 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-EE-A2MS-06 X 27766245 27766245 C T DCAF8L2 Silent p.F411F 0.41 TCGA-EE-A2MS-06 X 27998981 27998981 G A DCAF8L1 Silent p.V157V 0.87 TCGA-EE-A2MS-06 X 30578126 30578126 G A CXorf21 Missense_Mutation p.S116F 0.47 tolerated(0.12) possibly_damaging(0.881) TCGA-EE-A2MS-06 X 30736685 30736685 C T GK Missense_Mutation p.R330C 0.29 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2MS-06 X 3229399 3229399 C T MXRA5 Missense_Mutation p.G2282E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 X 3235716 3235716 G A MXRA5 Silent p.I2002I 0.37 TCGA-EE-A2MS-06 X 3241058 3241058 C T MXRA5 Missense_Mutation p.D890N 0.89 tolerated(0.21) benign(0.016) TCGA-EE-A2MS-06 X 34148669 34148669 C T FAM47A Missense_Mutation p.R576Q 0.90 tolerated(0.69) benign(0.005) TCGA-EE-A2MS-06 X 34150306 34150306 G A FAM47A Silent p.F30F 0.88 TCGA-EE-A2MS-06 X 34961077 34961077 G A FAM47B Silent p.V43V 0.88 TCGA-EE-A2MS-06 X 34962641 34962641 G A FAM47B Missense_Mutation p.E565K 0.36 deleterious(0) benign(0.225) TCGA-EE-A2MS-06 X 36007618 36007618 G T CXorf22 Missense_Mutation p.G966W 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-EE-A2MS-06 X 37026576 37026576 G A FAM47C Silent p.A31A 0.23 TCGA-EE-A2MS-06 X 47466349 47466349 G A SYN1 Silent p.V174V 0.83 TCGA-EE-A2MS-06 X 47774358 47774358 A G ZNF81 Missense_Mutation p.I105V 0.83 tolerated(0.08) benign(0.015) TCGA-EE-A2MS-06 X 47918760 47918760 G A ZNF630 Silent p.S357S 0.57 TCGA-EE-A2MS-06 X 47918761 47918761 G A ZNF630 Missense_Mutation p.S357F 0.57 tolerated(0.19) possibly_damaging(0.856) TCGA-EE-A2MS-06 X 48336904 48336904 C T FTSJ1 Silent p.I63I 0.94 TCGA-EE-A2MS-06 X 48681693 48681693 C T HDAC6 Silent p.L962L 0.57 TCGA-EE-A2MS-06 X 48896849 48896849 A C TFE3 Missense_Mutation p.M106R 0.82 tolerated(0.1) unknown(0) TCGA-EE-A2MS-06 X 49071988 49071988 G A CACNA1F Silent p.A1095A 0.83 TCGA-EE-A2MS-06 X 50052425 50052425 C T CCNB3 Missense_Mutation p.S419F 0.87 tolerated(0.07) benign(0.141) TCGA-EE-A2MS-06 X 50114815 50114815 C T DGKK RNA 0.92 TCGA-EE-A2MS-06 X 50130633 50130633 C T DGKK RNA 0.83 TCGA-EE-A2MS-06 X 50659191 50659191 G A BMP15 Missense_Mutation p.E255K 0.83 tolerated(0.35) benign(0.005) TCGA-EE-A2MS-06 X 52682029 52682029 G A SSX7 Silent p.F25F 0.90 TCGA-EE-A2MS-06 X 54971908 54971908 G A PFKFB1 Silent p.D354D 0.32 TCGA-EE-A2MS-06 X 54982606 54982606 G A PFKFB1 Silent p.P206P 0.43 TCGA-EE-A2MS-06 X 55479300 55479300 C T MAGEH1 Missense_Mutation p.P165S 0.87 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EE-A2MS-06 X 62570692 62570692 G A SPIN4 Missense_Mutation p.P3S 0.92 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MS-06 X 63411267 63411267 G A AMER1 Missense_Mutation p.R634C 0.88 tolerated(0.25) benign(0.002) TCGA-EE-A2MS-06 X 63563500 63563500 G A MTMR8 Silent p.F322F 1.00 TCGA-EE-A2MS-06 X 65414953 65414953 G A HEPH Silent p.R515R 0.71 TCGA-EE-A2MS-06 X 67937559 67937559 G A STARD8 Missense_Mutation p.G268D 0.29 tolerated(0.53) benign(0.002) TCGA-EE-A2MS-06 X 67937560 67937560 T A STARD8 Silent p.G268G 0.25 TCGA-EE-A2MS-06 X 69670617 69670617 C T DLG3 Silent p.P323P 0.33 TCGA-EE-A2MS-06 X 7177712 7177712 G A STS Silent p.L240L 0.51 TCGA-EE-A2MS-06 X 71830924 71830924 C T PHKA1 Missense_Mutation p.R827Q 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A2MS-06 X 71915728 71915728 T A PHKA1 Splice_Site p.X96_splice 0.90 TCGA-EE-A2MS-06 X 73043728 73043728 C T XIST RNA 0.85 TCGA-EE-A2MS-06 X 73050944 73050944 G A XIST RNA 0.91 TCGA-EE-A2MS-06 X 73064557 73064557 G A XIST RNA 0.47 TCGA-EE-A2MS-06 X 73524122 73524122 C T ZCCHC13 Silent p.F7F 0.56 TCGA-EE-A2MS-06 X 73814155 73814155 G T RLIM Nonsense_Mutation p.S80* 0.90 TCGA-EE-A2MS-06 X 73959966 73959966 C T KIAA2022 Missense_Mutation p.E1476K 0.87 tolerated(0.16) benign(0.158) TCGA-EE-A2MS-06 X 73963608 73963608 C T KIAA2022 Missense_Mutation p.E262K 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MS-06 X 73963876 73963876 C T KIAA2022 Silent p.R172R 0.93 TCGA-EE-A2MS-06 X 74648914 74648914 C T ZDHHC15 Missense_Mutation p.R201K 0.26 tolerated(0.36) benign(0.012) TCGA-EE-A2MS-06 X 75004023 75004023 G A MAGEE2 Silent p.A288A 0.31 TCGA-EE-A2MS-06 X 82764188 82764188 G A POU3F4 Missense_Mutation p.E286K 0.88 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MS-06 X 84525875 84525875 G A ZNF711 Missense_Mutation p.D443N 0.46 deleterious(0.01) possibly_damaging(0.894) TCGA-EE-A2MS-06 X 84559434 84559434 C T POF1B Missense_Mutation p.G494E 0.95 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MS-06 X 84569509 84569509 C T POF1B Missense_Mutation p.E296K 1.00 deleterious(0.02) possibly_damaging(0.734) TCGA-EE-A2MS-06 X 86067880 86067880 C T DACH2 Missense_Mutation p.P421L 0.91 deleterious(0) possibly_damaging(0.573) TCGA-EE-A2MS-06 X 99661775 99661775 C T PCDH19 Missense_Mutation p.M607I 0.82 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 10 100152760 100152760 G A PYROXD2 Missense_Mutation p.A289V 0.44 deleterious(0.01) possibly_damaging(0.477) TCGA-EE-A2MT-06 10 101122015 101122015 G A CNNM1 Silent p.S630S 0.31 TCGA-EE-A2MT-06 10 101419712 101419712 C T ENTPD7 5'UTR 0.29 TCGA-EE-A2MT-06 10 101419713 101419713 C T ENTPD7 5'UTR 0.28 TCGA-EE-A2MT-06 10 103339983 103339983 C A POLL Intron 0.35 TCGA-EE-A2MT-06 10 105795286 105795286 C T COL17A1 Missense_Mutation p.G1152R 0.32 probably_damaging(1) TCGA-EE-A2MT-06 10 112356173 112356173 C T SMC3 Missense_Mutation p.R661W 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 10 114177604 114177604 G A ACSL5 Missense_Mutation p.D463N 0.36 tolerated(0.42) benign(0.007) TCGA-EE-A2MT-06 10 119026272 119026272 T C SLC18A2 Silent p.S340S 0.40 TCGA-EE-A2MT-06 10 124266317 124266317 C T HTRA1 Silent p.I296I 0.40 TCGA-EE-A2MT-06 10 129897478 129897478 A C MKI67 Missense_Mutation p.S3249R 0.61 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A2MT-06 10 131671816 131671816 G A EBF3 Silent p.A227A 0.40 TCGA-EE-A2MT-06 10 131671817 131671817 G A EBF3 Missense_Mutation p.A227V 0.40 deleterious(0) benign(0.173) TCGA-EE-A2MT-06 10 132944875 132944875 C T TCERG1L Silent p.T361T 0.38 TCGA-EE-A2MT-06 10 134158143 134158143 C T LRRC27 Missense_Mutation p.P181L 0.40 tolerated(0.75) probably_damaging(0.981) TCGA-EE-A2MT-06 10 21134298 21134298 C T NEBL Splice_Site p.X373_splice 0.47 TCGA-EE-A2MT-06 10 24833908 24833908 A C KIAA1217 Splice_Site p.X1738_splice 0.44 TCGA-EE-A2MT-06 10 26465656 26465656 C T MYO3A Silent p.F1440F 0.40 TCGA-EE-A2MT-06 10 30318427 30318427 C T KIAA1462 Missense_Mutation p.G217E 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MT-06 10 46965032 46965032 G A SYT15 Missense_Mutation p.L305F 0.18 tolerated(0.08) probably_damaging(0.997) TCGA-EE-A2MT-06 10 48371348 48371348 C T ZNF488 Silent p.S272S 0.34 TCGA-EE-A2MT-06 10 48414365 48414365 C T GDF2 Missense_Mutation p.G168E 0.25 tolerated(0.19) probably_damaging(0.98) TCGA-EE-A2MT-06 10 48428785 48428785 C T GDF10 Silent p.R367R 0.43 TCGA-EE-A2MT-06 10 50255061 50255061 C T VSTM4 Silent p.P268P 0.39 TCGA-EE-A2MT-06 10 50311712 50311712 G A VSTM4 Intron 0.37 TCGA-EE-A2MT-06 10 52005023 52005023 C T ASAH2 Missense_Mutation p.G107R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 10 55569295 55569295 C T PCDH15 Missense_Mutation p.R1522K 0.35 benign(0) TCGA-EE-A2MT-06 10 55587225 55587225 A G PCDH15 Missense_Mutation p.V1432A 0.48 tolerated_low_confidence(0.4) benign(0.008) TCGA-EE-A2MT-06 10 55755479 55755479 C T PCDH15 Missense_Mutation p.G933E 0.44 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A2MT-06 10 61815586 61815586 G A ANK3 Missense_Mutation p.P4299S 0.45 benign(0.001) TCGA-EE-A2MT-06 10 6264931 6264931 C T PFKFB3 Silent p.F399F 0.27 TCGA-EE-A2MT-06 10 63195962 63195962 G A TMEM26 Missense_Mutation p.S79L 0.24 deleterious(0) probably_damaging(0.957) TCGA-EE-A2MT-06 10 69926297 69926297 G A MYPN Missense_Mutation p.G616D 0.42 deleterious(0.04) benign(0.193) TCGA-EE-A2MT-06 10 70105617 70105617 C T RUFY2 Missense_Mutation p.E612K 0.38 deleterious(0.04) benign(0.055) TCGA-EE-A2MT-06 10 70670829 70670829 G A DDX50 Missense_Mutation p.G156R 0.32 deleterious(0.03) possibly_damaging(0.713) TCGA-EE-A2MT-06 10 70670830 70670830 G A DDX50 Missense_Mutation p.G156E 0.32 deleterious(0.03) probably_damaging(0.948) TCGA-EE-A2MT-06 10 75051077 75051077 C T TTC18 Missense_Mutation p.D786N 0.38 tolerated(0.63) benign(0.079) TCGA-EE-A2MT-06 10 75143041 75143041 G A ANXA7 Silent p.I292I 0.21 TCGA-EE-A2MT-06 10 75185684 75185684 C T MSS51 Silent p.L318L 0.43 TCGA-EE-A2MT-06 10 84745329 84745329 G A NRG3 Missense_Mutation p.E687K 0.33 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A2MT-06 10 91497608 91497609 AT - KIF20B Frame_Shift_Del p.I964Rfs*13 0.33 TCGA-EE-A2MT-06 10 94824257 94824257 G A CYP26C1 Silent p.R275R 0.34 TCGA-EE-A2MT-06 10 94837052 94837052 G A CYP26A1 Silent p.G495G 0.41 TCGA-EE-A2MT-06 10 96698425 96698425 G A CYP2C9 5'Flank 0.36 TCGA-EE-A2MT-06 10 96970436 96970436 G A C10orf129 Missense_Mutation p.R214K 0.48 tolerated(1) benign(0.034) TCGA-EE-A2MT-06 10 98136548 98136548 C T TLL2 Silent p.V783V 0.38 TCGA-EE-A2MT-06 10 99126318 99126318 G A RRP12 Silent p.S1092S 0.43 TCGA-EE-A2MT-06 11 102496038 102496038 G A MMP20 Missense_Mutation p.P5S 0.56 deleterious(0.02) benign(0.002) TCGA-EE-A2MT-06 11 1093803 1093803 C T MUC2 Silent p.T1874T 0.38 TCGA-EE-A2MT-06 11 111637118 111637118 C T PPP2R1B 5'Flank 0.72 TCGA-EE-A2MT-06 11 113860336 113860336 G A HTR3A Missense_Mutation p.E468K 0.60 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A2MT-06 11 114168756 114168756 G A NNMT Missense_Mutation p.E80K 0.65 deleterious(0.02) benign(0.17) TCGA-EE-A2MT-06 11 119103291 119103291 G A CBL Missense_Mutation p.G110E 0.62 tolerated(0.05) possibly_damaging(0.899) TCGA-EE-A2MT-06 11 124266550 124266550 C T OR8B3 Missense_Mutation p.G233E 0.69 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A2MT-06 11 22384297 22384297 G A SLC17A6 Missense_Mutation p.G225E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 11 2434128 2434128 C T TRPM5 Silent p.G737G 0.42 TCGA-EE-A2MT-06 11 26692589 26692589 G A SLC5A12 3'UTR 0.41 TCGA-EE-A2MT-06 11 32126010 32126010 G A RCN1 Missense_Mutation p.E330K 0.83 deleterious(0) probably_damaging(0.961) TCGA-EE-A2MT-06 11 33123756 33123756 G A CSTF3 Missense_Mutation p.R265C 0.42 deleterious(0) possibly_damaging(0.837) TCGA-EE-A2MT-06 11 33123758 33123758 A T CSTF3 Missense_Mutation p.L264H 0.42 deleterious(0) possibly_damaging(0.707) TCGA-EE-A2MT-06 11 36631725 36631725 C T C11orf74 Silent p.F24F 0.38 TCGA-EE-A2MT-06 11 46564804 46564804 G A AMBRA1 Nonsense_Mutation p.Q255* 0.50 TCGA-EE-A2MT-06 11 47364160 47364160 C T MYBPC3 Silent p.G531G 0.40 TCGA-EE-A2MT-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.43 deleterious(0) probably_damaging(0.965) TCGA-EE-A2MT-06 11 4928900 4928900 G A OR51A7 Missense_Mutation p.E101K 0.48 deleterious(0.02) possibly_damaging(0.461) TCGA-EE-A2MT-06 11 49598041 49598041 G A RP11-707M1.1 RNA 0.23 TCGA-EE-A2MT-06 11 4967648 4967648 C T OR51A4 Missense_Mutation p.G228E 0.38 deleterious(0.05) benign(0.182) TCGA-EE-A2MT-06 11 50003995 50003995 G A OR4C12 Missense_Mutation p.L15F 0.43 deleterious_low_confidence(0.02) benign(0.059) TCGA-EE-A2MT-06 11 5153501 5153501 G A OR52A5 Silent p.R124R 0.38 TCGA-EE-A2MT-06 11 5322905 5322905 G A OR51B4 Missense_Mutation p.A91V 0.37 deleterious(0.03) benign(0.004) TCGA-EE-A2MT-06 11 55111458 55111458 C T OR4A16 Missense_Mutation p.S261F 0.25 tolerated_low_confidence(0.07) benign(0.33) TCGA-EE-A2MT-06 11 55944228 55944228 G A OR5J2 Missense_Mutation p.M45I 0.46 tolerated(0.08) benign(0.081) TCGA-EE-A2MT-06 11 56258383 56258383 C T OR5M8 Missense_Mutation p.G155D 0.44 deleterious(0) possibly_damaging(0.783) TCGA-EE-A2MT-06 11 56954765 56954765 C T LRRC55 Silent p.A279A 0.46 TCGA-EE-A2MT-06 11 58295604 58295604 G A LPXN Missense_Mutation p.P273L 0.36 deleterious(0.01) benign(0.361) TCGA-EE-A2MT-06 11 5842175 5842175 G A OR52N2 Missense_Mutation p.V204I 0.42 tolerated(0.1) benign(0.053) TCGA-EE-A2MT-06 11 58601914 58601914 C T GLYATL2 Silent p.K291K 0.64 TCGA-EE-A2MT-06 11 5862771 5862771 G A OR52E6 Silent p.A119A 0.42 TCGA-EE-A2MT-06 11 59131981 59131981 G A OR5AN1 Missense_Mutation p.G17E 0.36 deleterious(0.01) possibly_damaging(0.84) TCGA-EE-A2MT-06 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.45 tolerated(0.06) benign(0.009) TCGA-EE-A2MT-06 11 59629071 59629071 G A TCN1 Missense_Mutation p.S162L 0.49 deleterious(0.04) possibly_damaging(0.469) TCGA-EE-A2MT-06 11 61563912 61563912 C T FEN1 Missense_Mutation p.P360L 0.26 tolerated(0.09) benign(0.175) TCGA-EE-A2MT-06 11 63283879 63283879 G A LGALS12 3'UTR 0.46 TCGA-EE-A2MT-06 11 63721833 63721833 C T NAA40 Missense_Mutation p.P199L 0.33 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A2MT-06 11 64622297 64622297 G A EHD1 Silent p.F371F 0.47 TCGA-EE-A2MT-06 11 64976830 64976830 C T CAPN1 Missense_Mutation p.S589L 0.29 deleterious(0) possibly_damaging(0.624) TCGA-EE-A2MT-06 11 65123767 65123767 C T TIGD3 Missense_Mutation p.S163F 0.31 tolerated(0.11) benign(0.203) TCGA-EE-A2MT-06 11 65408787 65408787 C T SIPA1 Missense_Mutation p.S132F 0.39 deleterious(0.03) benign(0.153) TCGA-EE-A2MT-06 11 66190649 66190649 G A NPAS4 Missense_Mutation p.G252R 0.50 tolerated(0.06) probably_damaging(0.98) TCGA-EE-A2MT-06 11 67171744 67171744 C T TBC1D10C Missense_Mutation p.S24F 0.56 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MT-06 11 67200855 67200855 C T RPS6KB2 Silent p.I281I 0.41 TCGA-EE-A2MT-06 11 67261749 67261749 C T PITPNM1 Missense_Mutation p.G942E 0.36 deleterious(0) possibly_damaging(0.889) TCGA-EE-A2MT-06 11 72145343 72145343 G A CLPB Missense_Mutation p.S59L 0.37 deleterious_low_confidence(0.03) benign(0.001) TCGA-EE-A2MT-06 11 72145607 72145607 G A CLPB 5'UTR 0.42 TCGA-EE-A2MT-06 11 7439255 7439255 G A SYT9 Silent p.K411K 0.56 TCGA-EE-A2MT-06 11 75152723 75152723 C T GDPD5 Silent p.L431L 0.83 TCGA-EE-A2MT-06 11 75299100 75299100 C T MAP6 Silent p.L482L 0.72 TCGA-EE-A2MT-06 11 75316844 75316844 G A MAP6 Intron 0.79 TCGA-EE-A2MT-06 11 7950061 7950061 G A OR10A6 Missense_Mutation p.S50F 0.45 tolerated(0.7) benign(0.003) TCGA-EE-A2MT-06 11 7960955 7960955 G A OR10A3 Missense_Mutation p.T38I 0.44 tolerated(0.57) benign(0.102) TCGA-EE-A2MT-06 11 85606418 85606418 G A CCDC83 Nonsense_Mutation p.W198* 0.69 TCGA-EE-A2MT-06 11 92531183 92531183 C T FAT3 Silent p.H1668H 0.70 TCGA-EE-A2MT-06 11 92532383 92532383 G A FAT3 Silent p.V2068V 0.72 TCGA-EE-A2MT-06 12 100707241 100707241 G A SCYL2 Silent p.E298E 0.28 TCGA-EE-A2MT-06 12 100707242 100707242 G A SCYL2 Missense_Mutation p.E299K 0.28 tolerated(0.32) benign(0.395) TCGA-EE-A2MT-06 12 100934464 100934464 G A NR1H4 Missense_Mutation p.D326N 0.33 tolerated(0.17) benign(0.038) TCGA-EE-A2MT-06 12 101763530 101763530 G A UTP20 Nonsense_Mutation p.W2139* 0.43 TCGA-EE-A2MT-06 12 10342755 10342755 T C TMEM52B 3'UTR 0.46 TCGA-EE-A2MT-06 12 103695950 103695950 C T C12orf42 Missense_Mutation p.R340Q 0.27 tolerated(0.53) benign(0.258) TCGA-EE-A2MT-06 12 104100699 104100699 G A STAB2 Missense_Mutation p.E1376K 0.36 tolerated(0.11) benign(0.002) TCGA-EE-A2MT-06 12 106889893 106889893 C T POLR3B Missense_Mutation p.P925L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 12 10750678 10750678 C T KLRAP1 RNA 0.34 TCGA-EE-A2MT-06 12 108589759 108589759 G A WSCD2 Silent p.A50A 0.36 TCGA-EE-A2MT-06 12 108985566 108985566 C T TMEM119 Silent p.R198R 0.45 TCGA-EE-A2MT-06 12 108985776 108985776 G A TMEM119 Silent p.Y128Y 0.45 TCGA-EE-A2MT-06 12 109210894 109210896 GTA TG SSH1 Frame_Shift_Del p.Y107Qfs*55 0.21 TCGA-EE-A2MT-06 12 113346385 113346385 C A OAS1 Missense_Mutation p.D75E 0.30 tolerated(0.08) probably_damaging(0.974) TCGA-EE-A2MT-06 12 113447186 113447186 G A OAS2 Intron 0.71 TCGA-EE-A2MT-06 12 117749355 117749355 C A NOS1 Silent p.V256V 0.38 TCGA-EE-A2MT-06 12 117962980 117962980 G A KSR2 Silent p.F632F 0.53 TCGA-EE-A2MT-06 12 120128034 120128034 G A CIT Silent p.P2036P 0.42 TCGA-EE-A2MT-06 12 120128035 120128035 G A CIT Missense_Mutation p.P2036L 0.42 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-EE-A2MT-06 12 120156089 120156090 GG A CIT Frame_Shift_Del p.P1377Rfs*33 0.35 TCGA-EE-A2MT-06 12 120575018 120575018 G A GCN1L1 Missense_Mutation p.P2257S 0.42 possibly_damaging(0.685) TCGA-EE-A2MT-06 12 120582844 120582844 C T GCN1L1 Missense_Mutation p.A1680T 0.33 probably_damaging(0.963) TCGA-EE-A2MT-06 12 120582845 120582845 C T GCN1L1 Silent p.K1679K 0.33 TCGA-EE-A2MT-06 12 1225057 1225057 C T ERC1 Missense_Mutation p.S476F 0.34 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MT-06 12 124315175 124315175 G A DNAH10 Missense_Mutation p.E1374K 0.42 benign(0.431) TCGA-EE-A2MT-06 12 125509639 125509639 C T BRI3BP Missense_Mutation p.S140F 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 12 12940208 12940208 C T APOLD1 Silent p.I154I 0.53 TCGA-EE-A2MT-06 12 130883572 130883572 C T RIMBP2 3'UTR 0.42 TCGA-EE-A2MT-06 12 132522282 132522282 C T EP400 Silent p.L2003L 0.31 TCGA-EE-A2MT-06 12 133434019 133434019 G A CHFR Silent p.L358L 0.36 TCGA-EE-A2MT-06 12 13367708 13367708 G A EMP1 3'UTR 0.38 TCGA-EE-A2MT-06 12 15636986 15636986 C T PTPRO Missense_Mutation p.P52S 0.36 tolerated_low_confidence(0.92) benign(0.004) TCGA-EE-A2MT-06 12 1748941 1748941 C T WNT5B Silent p.T140T 0.22 TCGA-EE-A2MT-06 12 21008089 21008089 G T LST3 Missense_Mutation p.G71V 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 12 21968756 21968756 C T ABCC9 Missense_Mutation p.E1322K 0.38 tolerated(0.09) benign(0.014) TCGA-EE-A2MT-06 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.36 deleterious(0.04) possibly_damaging(0.506) TCGA-EE-A2MT-06 12 278224 278224 C T IQSEC3 Missense_Mutation p.P1006L 0.41 deleterious(0.03) benign(0.057) TCGA-EE-A2MT-06 12 2909631 2909631 C T FKBP4 Missense_Mutation p.S307F 0.34 deleterious(0.01) probably_damaging(0.944) TCGA-EE-A2MT-06 12 32145457 32145457 T G KIAA1551 Missense_Mutation p.S1744R 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 12 32145458 32145458 C T KIAA1551 Missense_Mutation p.P1745S 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MT-06 12 40114940 40114940 C T C12orf40 Silent p.L616L 0.43 TCGA-EE-A2MT-06 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.24 deleterious(0.01) possibly_damaging(0.836) TCGA-EE-A2MT-06 12 41967284 41967284 C T PDZRN4 Silent p.I901I 0.41 TCGA-EE-A2MT-06 12 43821132 43821132 C T ADAMTS20 Nonsense_Mutation p.W1362* 0.36 TCGA-EE-A2MT-06 12 47172136 47172136 G A SLC38A4 Missense_Mutation p.P337S 0.49 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A2MT-06 12 48368607 48368607 C T COL2A1 Missense_Mutation p.D1309N 0.36 unknown(0) TCGA-EE-A2MT-06 12 49220860 49220860 C T CACNB3 Missense_Mutation p.P365L 0.34 tolerated(0.13) benign(0.076) TCGA-EE-A2MT-06 12 50037688 50037688 G A PRPF40B Silent p.K829K 0.22 TCGA-EE-A2MT-06 12 50186345 50186345 G A NCKAP5L Missense_Mutation p.P1226S 0.36 tolerated(0.43) benign(0.281) TCGA-EE-A2MT-06 12 50186346 50186346 G A NCKAP5L Silent p.T1225T 0.34 TCGA-EE-A2MT-06 12 52200262 52200262 C T SCN8A Silent p.I1664I 0.41 TCGA-EE-A2MT-06 12 52200631 52200631 C T SCN8A Silent p.T1787T 0.42 TCGA-EE-A2MT-06 12 52715168 52715168 G A KRT83 5'UTR 0.38 TCGA-EE-A2MT-06 12 52886924 52886924 C T KRT6A Missense_Mutation p.G17S 0.28 tolerated(0.16) unknown(0) TCGA-EE-A2MT-06 12 53512693 53512693 A T SOAT2 Missense_Mutation p.N295Y 0.37 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A2MT-06 12 54686866 54686866 G A NFE2 Silent p.P138P 0.34 TCGA-EE-A2MT-06 12 55846693 55846693 G A OR6C2 Silent p.R232R 0.44 TCGA-EE-A2MT-06 12 55863029 55863029 G A OR6C70 Silent p.A298A 0.40 TCGA-EE-A2MT-06 12 6697065 6697065 G A CHD4 Silent p.Y1172Y 0.50 TCGA-EE-A2MT-06 12 6928051 6928051 C T CD4 Silent p.L439L 0.51 TCGA-EE-A2MT-06 12 7527122 7527122 C T CD163L1 Missense_Mutation p.E1109K 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 12 7531671 7531671 G A CD163L1 Silent p.G758G 0.53 TCGA-EE-A2MT-06 12 78362305 78362305 G A NAV3 Missense_Mutation p.R165K 0.28 deleterious(0) possibly_damaging(0.833) TCGA-EE-A2MT-06 12 7867913 7867913 G A DPPA3 Missense_Mutation p.E73K 0.38 tolerated(0.38) possibly_damaging(0.452) TCGA-EE-A2MT-06 12 7966932 7966932 C T SLC2A14 Missense_Mutation p.E515K 0.35 deleterious_low_confidence(0.03) benign(0.184) TCGA-EE-A2MT-06 12 7966933 7966933 C T SLC2A14 Silent p.K514K 0.35 TCGA-EE-A2MT-06 12 8374351 8374351 C T FAM90A1 3'UTR 0.38 TCGA-EE-A2MT-06 12 86199418 86199418 G A RASSF9 Missense_Mutation p.P124S 0.39 tolerated(0.24) benign(0.053) TCGA-EE-A2MT-06 12 8993994 8993994 C T A2ML1 Silent p.F370F 0.41 TCGA-EE-A2MT-06 12 8993995 8993995 C T A2ML1 Missense_Mutation p.L371F 0.42 deleterious(0.03) benign(0.078) TCGA-EE-A2MT-06 12 90018083 90018083 C T ATP2B1 Silent p.E407E 0.35 TCGA-EE-A2MT-06 12 90018085 90018085 C T ATP2B1 Missense_Mutation p.E407K 0.34 tolerated(0.17) benign(0.108) TCGA-EE-A2MT-06 12 95488388 95488388 G A FGD6 Missense_Mutation p.P1194S 0.42 tolerated(0.33) benign(0.011) TCGA-EE-A2MT-06 12 96104261 96104261 G A NTN4 Missense_Mutation p.R380C 0.54 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MT-06 12 96370260 96370260 G A HAL Missense_Mutation p.R594C 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 12 96640771 96640771 C T ELK3 Silent p.F87F 0.43 TCGA-EE-A2MT-06 13 101712206 101712206 C T NALCN Silent p.T1623T 0.34 TCGA-EE-A2MT-06 13 102344979 102344979 C T ITGBL1 Missense_Mutation p.R354C 0.38 tolerated_low_confidence(0.06) benign(0.258) TCGA-EE-A2MT-06 13 103266516 103266516 C T TPP2 Silent p.F120F 0.45 TCGA-EE-A2MT-06 13 103718588 103718588 C T SLC10A2 Silent p.P4P 0.38 TCGA-EE-A2MT-06 13 109793523 109793523 C T MYO16 Missense_Mutation p.P1633S 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MT-06 13 109817354 109817354 C T MYO16 Missense_Mutation p.S1735F 0.55 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-EE-A2MT-06 13 111287046 111287046 C T CARKD Missense_Mutation p.P192S 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MT-06 13 113633988 113633988 G A MCF2L Intron 0.51 TCGA-EE-A2MT-06 13 113852557 113852557 A C PCID2 Missense_Mutation p.C50G 0.42 deleterious(0) possibly_damaging(0.454) TCGA-EE-A2MT-06 13 19997296 19997296 A T TPTE2 Missense_Mutation p.L492Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 13 23777974 23777974 C T SGCG Silent p.L47L 0.24 TCGA-EE-A2MT-06 13 23869576 23869576 A G SGCG Silent p.E176E 0.44 TCGA-EE-A2MT-06 13 23915199 23915199 G A SACS Missense_Mutation p.S939F 0.28 benign(0.444) TCGA-EE-A2MT-06 13 28014234 28014234 G A MTIF3 Nonsense_Mutation p.Q118* 0.38 TCGA-EE-A2MT-06 13 32527498 32527498 C G EEF1DP3 RNA 0.44 TCGA-EE-A2MT-06 13 32722017 32722017 C T FRY Missense_Mutation p.S442F 0.50 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MT-06 13 32745367 32745367 G A FRY Missense_Mutation p.G704E 0.56 tolerated(0.08) benign(0.007) TCGA-EE-A2MT-06 13 32918762 32918762 C T BRCA2 Silent p.S2303S 0.35 TCGA-EE-A2MT-06 13 33344523 33344523 C T PDS5B Missense_Mutation p.L1297F 0.39 tolerated_low_confidence(0.05) benign(0.176) TCGA-EE-A2MT-06 13 33684994 33684994 C T STARD13 Silent p.E886E 0.58 TCGA-EE-A2MT-06 13 41134157 41134157 C T FOXO1 Missense_Mutation p.V491I 0.32 tolerated(0.27) benign(0.197) TCGA-EE-A2MT-06 13 41134158 41134158 C T FOXO1 Silent p.R490R 0.30 TCGA-EE-A2MT-06 13 42875638 42875638 C T AKAP11 Missense_Mutation p.S919F 0.44 tolerated(0.71) benign(0) TCGA-EE-A2MT-06 13 45767873 45767873 C T KCTD4 3'UTR 0.29 TCGA-EE-A2MT-06 13 48953759 48953759 C T RB1 Silent p.Y454Y 0.40 TCGA-EE-A2MT-06 13 48953760 48953760 C T RB1 Nonsense_Mutation p.R455* 0.40 TCGA-EE-A2MT-06 13 49027168 49027168 C T RB1 Nonsense_Mutation p.R579* 0.32 TCGA-EE-A2MT-06 13 50066087 50066087 C T SETDB2 3'UTR 0.33 TCGA-EE-A2MT-06 13 51918420 51918420 T G SERPINE3 Missense_Mutation p.Y97D 0.30 deleterious(0.05) benign(0.082) TCGA-EE-A2MT-06 13 70281842 70281842 C T KLHL1 Missense_Mutation p.R701K 0.40 tolerated(0.73) benign(0.006) TCGA-EE-A2MT-06 13 77595986 77595986 C T FBXL3 Missense_Mutation p.G4R 0.42 tolerated_low_confidence(0.29) benign(0.004) TCGA-EE-A2MT-06 13 79191232 79191232 G A RNF219 Missense_Mutation p.L222F 0.43 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MT-06 13 92797119 92797119 G A GPC5 Missense_Mutation p.E480K 0.36 tolerated(0.25) benign(0.243) TCGA-EE-A2MT-06 14 102508358 102508358 C T DYNC1H1 Silent p.P4037P 0.39 TCGA-EE-A2MT-06 14 103180860 103180860 C T RCOR1 Missense_Mutation p.S320F 0.43 deleterious(0) probably_damaging(0.95) TCGA-EE-A2MT-06 14 105175702 105175702 C T INF2 Silent p.L678L 0.20 TCGA-EE-A2MT-06 14 105518091 105518094 ACGT - GPR132 Frame_Shift_Del p.Y127Sfs*105 0.41 TCGA-EE-A2MT-06 14 105960205 105960205 C T C14orf80 Nonsense_Mutation p.Q207* 0.45 TCGA-EE-A2MT-06 14 106237653 106237653 C T IGHG3 Missense_Mutation p.D31N 0.50 tolerated(0.17) benign(0.053) TCGA-EE-A2MT-06 14 20296115 20296115 G A OR4N2 Missense_Mutation p.G170S 0.38 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 14 20444710 20444710 C T OR4K15 Silent p.L345L 0.35 TCGA-EE-A2MT-06 14 20851703 20851703 A G TEP1 Silent p.L1271L 0.43 TCGA-EE-A2MT-06 14 21542561 21542561 C T ARHGEF40 Silent p.T224T 0.43 TCGA-EE-A2MT-06 14 21542562 21542562 C T ARHGEF40 Missense_Mutation p.R225W 0.43 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MT-06 14 21623343 21623343 G A OR5AU1 Missense_Mutation p.S281L 0.32 deleterious(0) benign(0.3) TCGA-EE-A2MT-06 14 21623768 21623768 C T OR5AU1 Silent p.K139K 0.32 TCGA-EE-A2MT-06 14 21623769 21623769 T A OR5AU1 Missense_Mutation p.K139M 0.32 deleterious(0.01) possibly_damaging(0.533) TCGA-EE-A2MT-06 14 21793025 21793025 G A RPGRIP1 Missense_Mutation p.G671R 0.40 deleterious(0) probably_damaging(0.967) TCGA-EE-A2MT-06 14 21796672 21796672 G A RPGRIP1 Silent p.K995K 0.40 TCGA-EE-A2MT-06 14 22217917 22217917 G A TRAV5 Missense_Mutation p.D90N 0.38 tolerated(0.15) benign(0.008) TCGA-EE-A2MT-06 14 22539349 22539349 C T TRAV22 Missense_Mutation p.P70L 0.48 deleterious(0.01) benign(0.015) TCGA-EE-A2MT-06 14 23390052 23390052 C T PRMT5 3'UTR 0.34 TCGA-EE-A2MT-06 14 24769901 24769901 C T NOP9 Silent p.L179L 0.35 TCGA-EE-A2MT-06 14 31578782 31578782 G A HECTD1 Nonsense_Mutation p.R2101* 0.39 TCGA-EE-A2MT-06 14 35593368 35593368 C T KIAA0391 Missense_Mutation p.S306L 0.38 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 14 35872465 35872465 G A NFKBIA Silent p.T146T 0.31 TCGA-EE-A2MT-06 14 50605391 50605391 G A SOS2 Missense_Mutation p.T966I 0.49 tolerated(0.28) probably_damaging(1) TCGA-EE-A2MT-06 14 50732175 50732175 G A L2HGDH Missense_Mutation p.S366F 0.41 tolerated(0.1) possibly_damaging(0.77) TCGA-EE-A2MT-06 14 53009099 53009099 G A TXNDC16 Missense_Mutation p.S78L 0.44 tolerated(0.24) benign(0.016) TCGA-EE-A2MT-06 14 58030954 58030954 C T SLC35F4 Missense_Mutation p.E489K 0.39 tolerated(0.42) possibly_damaging(0.638) TCGA-EE-A2MT-06 14 64547173 64547173 G A SYNE2 Splice_Site p.X3722_splice 0.46 TCGA-EE-A2MT-06 14 65053938 65053938 G A PPP1R36 Silent p.V246V 0.42 TCGA-EE-A2MT-06 14 69371391 69371391 G A ACTN1 Silent p.P219P 0.36 TCGA-EE-A2MT-06 14 69695678 69695678 C T EXD2 Missense_Mutation p.T160I 0.35 tolerated(0.06) benign(0.123) TCGA-EE-A2MT-06 14 70263876 70263876 C T SLC10A1 5'UTR 0.36 TCGA-EE-A2MT-06 14 71202744 71202744 G A MAP3K9 Missense_Mutation p.S616F 0.53 tolerated(0.13) possibly_damaging(0.731) TCGA-EE-A2MT-06 14 74083772 74083772 C A ACOT6 5'UTR 0.40 TCGA-EE-A2MT-06 14 74083773 74083773 C T ACOT6 5'UTR 0.41 TCGA-EE-A2MT-06 14 74538651 74538651 C T ALDH6A1 Silent p.L125L 0.49 TCGA-EE-A2MT-06 14 74759018 74759018 G A ABCD4 Silent p.L364L 0.35 TCGA-EE-A2MT-06 14 74759019 74759019 G A ABCD4 Silent p.I363I 0.34 TCGA-EE-A2MT-06 14 74876350 74876350 G A SYNDIG1L Missense_Mutation p.S33F 0.36 tolerated(0.06) possibly_damaging(0.521) TCGA-EE-A2MT-06 14 74988709 74988709 C T LTBP2 Missense_Mutation p.G898E 0.43 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MT-06 14 75330053 75330053 C T PROX2 Missense_Mutation p.G162E 0.44 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2MT-06 14 75330535 75330535 C T PROX2 Translation_Start_Site p.M1? 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.447) TCGA-EE-A2MT-06 14 76452105 76452105 G A IFT43 5'Flank 0.28 TCGA-EE-A2MT-06 14 81745057 81745057 C T STON2 Missense_Mutation p.E200K 0.40 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-EE-A2MT-06 14 89109309 89109309 G A EML5 Missense_Mutation p.H1389Y 0.37 tolerated(0.13) benign(0.317) TCGA-EE-A2MT-06 14 93723605 93723605 G A BTBD7 Missense_Mutation p.S515F 0.44 deleterious(0.01) benign(0.155) TCGA-EE-A2MT-06 14 94419799 94419799 A G ASB2 Missense_Mutation p.L178S 0.36 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MT-06 14 95111301 95111301 G A SERPINA13P RNA 0.38 TCGA-EE-A2MT-06 14 96131391 96131391 C T TCL6 RNA 0.33 TCGA-EE-A2MT-06 14 99183661 99183661 C T C14orf177 3'UTR 0.23 TCGA-EE-A2MT-06 15 101427813 101427813 G A ALDH1A3 Missense_Mutation p.A81T 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 15 101593520 101593520 C T LRRK1 Missense_Mutation p.P1317S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 15 101718446 101718446 A G CHSY1 Missense_Mutation p.L519P 0.34 tolerated(0.28) benign(0.031) TCGA-EE-A2MT-06 15 20495418 20495418 C T CHEK2P2 RNA 0.12 TCGA-EE-A2MT-06 15 24924035 24924035 G A NPAP1 Silent p.V1007V 0.28 TCGA-EE-A2MT-06 15 24924145 24924145 G A NPAP1 Missense_Mutation p.G1044E 0.30 tolerated_low_confidence(0.1) probably_damaging(0.917) TCGA-EE-A2MT-06 15 24924146 24924146 G A NPAP1 Silent p.G1044G 0.32 TCGA-EE-A2MT-06 15 25463664 25463664 G A SNORD115-27 5'Flank 0.29 TCGA-EE-A2MT-06 15 25486747 25486747 C T SNORD115-40 5'Flank 0.32 TCGA-EE-A2MT-06 15 28408265 28408265 G A HERC2 Missense_Mutation p.S3574F 0.29 possibly_damaging(0.614) TCGA-EE-A2MT-06 15 28600011 28600011 G A RP11-483E23.2 Intron 0.16 TCGA-EE-A2MT-06 15 28600114 28600114 C T RP11-483E23.2 RNA 0.13 TCGA-EE-A2MT-06 15 29561830 29561830 G A NDNL2 Missense_Mutation p.P27L 0.50 tolerated(0.17) benign(0) TCGA-EE-A2MT-06 15 31358298 31358298 G A TRPM1 Silent p.S274S 0.42 TCGA-EE-A2MT-06 15 33895388 33895388 G A RYR3 Missense_Mutation p.E663K 0.37 probably_damaging(0.999) TCGA-EE-A2MT-06 15 33962662 33962662 C T RYR3 Missense_Mutation p.S1922F 0.38 benign(0.187) TCGA-EE-A2MT-06 15 34130072 34130072 C T RYR3 Missense_Mutation p.S3964L 0.41 probably_damaging(0.951) TCGA-EE-A2MT-06 15 34649254 34649254 A T NUTM1 Missense_Mutation p.E987D 0.44 tolerated(0.1) benign(0.037) TCGA-EE-A2MT-06 15 38852081 38852081 C T RASGRP1 Missense_Mutation p.G54E 0.54 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A2MT-06 15 42050032 42050032 C T MGA Nonsense_Mutation p.R2396* 0.48 TCGA-EE-A2MT-06 15 42619583 42619583 C T GANC Silent p.F481F 0.43 TCGA-EE-A2MT-06 15 42632908 42632908 C T GANC Missense_Mutation p.P703L 0.30 probably_damaging(0.997) TCGA-EE-A2MT-06 15 43021262 43021262 G A CDAN1 Silent p.F868F 0.43 TCGA-EE-A2MT-06 15 43548859 43548859 T C TGM5 Silent p.E154E 0.44 TCGA-EE-A2MT-06 15 43893183 43893183 C T STRC Silent p.R1577R 0.33 TCGA-EE-A2MT-06 15 45401027 45401027 G A DUOX2 Missense_Mutation p.P453L 0.36 tolerated(0.69) benign(0.083) TCGA-EE-A2MT-06 15 48634310 48634310 C T DUT 3'UTR 0.46 TCGA-EE-A2MT-06 15 52571191 52571191 G A MYO5C Missense_Mutation p.P110S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 15 55974628 55974628 G A PRTG Missense_Mutation p.R204C 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MT-06 15 58938315 58938315 T A ADAM10 Missense_Mutation p.Y225F 0.45 tolerated(0.71) benign(0.001) TCGA-EE-A2MT-06 15 60297359 60297359 C T FOXB1 Missense_Mutation p.S66F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 15 64791939 64791939 C T ZNF609 Silent p.S107S 0.41 TCGA-EE-A2MT-06 15 65931956 65931956 G A SLC24A1 Silent p.G656G 0.40 TCGA-EE-A2MT-06 15 68119370 68119370 G A SKOR1 Missense_Mutation p.A509T 0.51 deleterious_low_confidence(0) benign(0.06) TCGA-EE-A2MT-06 15 68649613 68649613 C T ITGA11 Missense_Mutation p.D209N 0.44 tolerated(0.36) possibly_damaging(0.497) TCGA-EE-A2MT-06 15 69007569 69007569 C T CORO2B Missense_Mutation p.R296W 0.32 deleterious(0) probably_damaging(0.973) TCGA-EE-A2MT-06 15 73468837 73468837 C T NEO1 Missense_Mutation p.P370L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 15 74326810 74326810 C T PML Intron 0.34 TCGA-EE-A2MT-06 15 74328256 74328256 C T PML Intron 0.35 TCGA-EE-A2MT-06 15 74487792 74487792 C T STRA6 Missense_Mutation p.G189R 0.35 deleterious(0) possibly_damaging(0.675) TCGA-EE-A2MT-06 15 83440853 83440853 C T FSD2 Silent p.Q413Q 0.54 TCGA-EE-A2MT-06 15 86076862 86076862 G A AKAP13 Missense_Mutation p.E77K 0.43 tolerated(0.07) benign(0.306) TCGA-EE-A2MT-06 15 89401231 89401231 C T ACAN Silent p.F1805F 0.38 TCGA-EE-A2MT-06 15 89867054 89867054 G A POLG Silent p.L717L 0.32 TCGA-EE-A2MT-06 15 89867055 89867055 G T POLG Silent p.P716P 0.32 TCGA-EE-A2MT-06 15 90167479 90167479 C T TICRR Missense_Mutation p.T1313I 0.37 deleterious(0.01) benign(0.15) TCGA-EE-A2MT-06 15 90281389 90281389 C T WDR93 Missense_Mutation p.P628L 0.40 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2MT-06 16 1254177 1254177 G A CACNA1H Missense_Mutation p.G724S 0.58 tolerated(1) benign(0.003) TCGA-EE-A2MT-06 16 14041765 14041765 C T ERCC4 Missense_Mutation p.S771F 0.40 deleterious(0.01) benign(0.139) TCGA-EE-A2MT-06 16 1537384 1537384 C T PTX4 Silent p.R238R 0.38 TCGA-EE-A2MT-06 16 15844056 15844056 G A MYH11 Missense_Mutation p.T673I 0.35 benign(0.058) TCGA-EE-A2MT-06 16 19883880 19883880 G A GPRC5B Silent p.H96H 0.42 TCGA-EE-A2MT-06 16 20362109 20362109 G A UMOD Intron 0.27 TCGA-EE-A2MT-06 16 20548552 20548552 G A ACSM2B 3'UTR 0.38 TCGA-EE-A2MT-06 16 20576154 20576154 C T ACSM2B Missense_Mutation p.R5Q 0.32 tolerated(0.35) benign(0.004) TCGA-EE-A2MT-06 16 20682984 20682984 G A ACSM1 Silent p.S207S 0.50 TCGA-EE-A2MT-06 16 21854860 21854860 G A NPIPB4 Missense_Mutation p.S131F 0.11 benign(0.202) TCGA-EE-A2MT-06 16 22316474 22316474 C T POLR3E Intron 0.38 TCGA-EE-A2MT-06 16 2237453 2237453 G A CASKIN1 Silent p.L209L 0.57 TCGA-EE-A2MT-06 16 23200907 23200907 G A SCNN1G Missense_Mutation p.R178K 0.32 tolerated(0.82) benign(0.012) TCGA-EE-A2MT-06 16 23364235 23364235 T G SCNN1B Missense_Mutation p.F142C 0.43 tolerated(0.17) possibly_damaging(0.684) TCGA-EE-A2MT-06 16 26147315 26147315 G A HS3ST4 Missense_Mutation p.D373N 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 16 27689234 27689234 T C KIAA0556 Missense_Mutation p.V242A 0.41 tolerated(1) benign(0.008) TCGA-EE-A2MT-06 16 28328872 28328872 G A SBK1 Missense_Mutation p.E54K 0.31 tolerated(0.12) benign(0.046) TCGA-EE-A2MT-06 16 28617224 28617224 G A SULT1A1 Missense_Mutation p.T269I 0.16 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MT-06 16 29906770 29906770 C T SEZ6L2 Silent p.L221L 0.54 TCGA-EE-A2MT-06 16 30536220 30536220 G A ZNF768 Missense_Mutation p.S414L 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MT-06 16 31095588 31095588 G A PRSS53 Silent p.F498F 0.52 TCGA-EE-A2MT-06 16 33020898 33020898 G A IGHV3OR16-8 Missense_Mutation p.M102I 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-EE-A2MT-06 16 396889 396889 G A AXIN1 Missense_Mutation p.S46F 0.35 tolerated(0.71) benign(0.003) TCGA-EE-A2MT-06 16 49671409 49671409 C T ZNF423 Missense_Mutation p.V552M 0.27 deleterious(0.04) possibly_damaging(0.522) TCGA-EE-A2MT-06 16 50667172 50667172 A C NKD1 Missense_Mutation p.H298P 0.37 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MT-06 16 51175289 51175289 A C SALL1 Missense_Mutation p.L282V 0.39 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A2MT-06 16 57734062 57734062 C T CCDC135 Silent p.F128F 0.37 TCGA-EE-A2MT-06 16 57803756 57803756 G A KIFC3 Nonsense_Mutation p.Q351* 0.51 TCGA-EE-A2MT-06 16 57803757 57803757 G A KIFC3 Silent p.A350A 0.51 TCGA-EE-A2MT-06 16 58549393 58549393 G A SETD6 5'UTR 0.67 TCGA-EE-A2MT-06 16 66599829 66599829 G A CKLF Missense_Mutation p.G125E 0.34 deleterious(0.01) possibly_damaging(0.65) TCGA-EE-A2MT-06 16 66599830 66599830 G A CKLF Silent p.G125G 0.34 TCGA-EE-A2MT-06 16 66944308 66944308 G T CDH16 Nonsense_Mutation p.Y674* 0.48 TCGA-EE-A2MT-06 16 67264052 67264052 C T FHOD1 Missense_Mutation p.R1044Q 0.31 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 16 67487503 67487503 G A ATP6V0D1 Silent p.F82F 0.45 TCGA-EE-A2MT-06 16 67915935 67915935 C T EDC4 Missense_Mutation p.S1028F 0.39 deleterious(0) possibly_damaging(0.646) TCGA-EE-A2MT-06 16 68021324 68021324 G A DPEP2 3'UTR 0.43 TCGA-EE-A2MT-06 16 69373524 69373524 G A NIP7 5'UTR 0.42 TCGA-EE-A2MT-06 16 70562804 70562804 C T SF3B3 Silent p.S33S 0.43 TCGA-EE-A2MT-06 16 76555131 76555131 T C CNTNAP4 Silent p.F747F 0.46 TCGA-EE-A2MT-06 16 81303936 81303936 A G BCMO1 Missense_Mutation p.N339S 0.40 deleterious(0.01) benign(0.367) TCGA-EE-A2MT-06 16 81944272 81944272 C T PLCG2 Silent p.F627F 0.39 TCGA-EE-A2MT-06 16 83712034 83712034 G A CDH13 Silent p.T549T 0.47 TCGA-EE-A2MT-06 16 84940263 84940263 G A CRISPLD2 3'UTR 0.38 TCGA-EE-A2MT-06 16 84940264 84940264 G A CRISPLD2 3'UTR 0.39 TCGA-EE-A2MT-06 16 87744986 87744986 G A KLHDC4 Missense_Mutation p.S300F 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 16 88664701 88664701 C T ZC3H18 Silent p.L268L 0.39 TCGA-EE-A2MT-06 16 89254573 89254573 G A CDH15 Silent p.R286R 0.43 TCGA-EE-A2MT-06 16 89294965 89294965 T A ZNF778 Missense_Mutation p.F729I 0.52 deleterious(0) benign(0.001) TCGA-EE-A2MT-06 16 9012978 9012978 G A USP7 Silent p.H210H 0.41 TCGA-EE-A2MT-06 16 9012979 9012979 T A USP7 Missense_Mutation p.H210L 0.41 tolerated(0.23) benign(0.049) TCGA-EE-A2MT-06 16 921330 921330 G A LMF1 Silent p.I303I 0.41 TCGA-EE-A2MT-06 17 10267715 10267715 C G MYH13 Missense_Mutation p.E45Q 0.31 tolerated(0.1) benign(0.018) TCGA-EE-A2MT-06 17 10295884 10295884 C T MYH8 Missense_Mutation p.R1848Q 0.41 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MT-06 17 10398588 10398588 G A MYH1 Missense_Mutation p.S1739F 0.42 deleterious(0.04) possibly_damaging(0.466) TCGA-EE-A2MT-06 17 10429969 10429969 C T MYH2 Silent p.R1378R 0.38 TCGA-EE-A2MT-06 17 10541731 10541731 C T MYH3 Missense_Mutation p.E1120K 0.38 tolerated(0.13) probably_damaging(0.989) TCGA-EE-A2MT-06 17 10558265 10558265 G A MYH3 Silent p.F39F 0.44 TCGA-EE-A2MT-06 17 10600867 10600867 C T SCO1 5'UTR 0.41 TCGA-EE-A2MT-06 17 11881676 11881676 G A ZNF18 Silent p.T416T 0.39 TCGA-EE-A2MT-06 17 12639565 12639565 G A MYOCD Missense_Mutation p.R168Q 0.43 tolerated(0.15) probably_damaging(0.999) TCGA-EE-A2MT-06 17 12656125 12656125 C T MYOCD Missense_Mutation p.P507L 0.34 tolerated(0.25) benign(0.004) TCGA-EE-A2MT-06 17 15212126 15212126 C T TEKT3 Missense_Mutation p.E371K 0.40 deleterious(0.03) probably_damaging(0.966) TCGA-EE-A2MT-06 17 1649139 1649139 C T SERPINF2 Silent p.S101S 0.42 TCGA-EE-A2MT-06 17 16612250 16612250 C T CCDC144A Silent p.L293L 0.39 TCGA-EE-A2MT-06 17 1686396 1686396 G A SMYD4 Missense_Mutation p.R732C 0.46 tolerated(0.07) benign(0.032) TCGA-EE-A2MT-06 17 17698096 17698096 C T RAI1 Silent p.L612L 0.49 TCGA-EE-A2MT-06 17 17699012 17699012 C T RAI1 Missense_Mutation p.P917L 0.45 deleterious_low_confidence(0) benign(0.178) TCGA-EE-A2MT-06 17 18022448 18022448 C T MYO15A Missense_Mutation p.P112S 0.44 probably_damaging(0.99) TCGA-EE-A2MT-06 17 18160274 18160274 G A FLII Silent p.N41N 0.22 TCGA-EE-A2MT-06 17 19642820 19642820 C T ALDH3A1 Splice_Site p.X372_splice 0.43 TCGA-EE-A2MT-06 17 26732175 26732175 C T SLC46A1 Silent p.R180R 0.46 TCGA-EE-A2MT-06 17 26851638 26851638 C T FOXN1 Missense_Mutation p.H81Y 0.41 deleterious_low_confidence(0.01) benign(0.192) TCGA-EE-A2MT-06 17 29556163 29556163 C T NF1 Missense_Mutation p.L844F 0.49 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MT-06 17 29654857 29654857 G A NF1 Missense_Mutation p.R1870Q 0.36 deleterious(0) probably_damaging(0.945) TCGA-EE-A2MT-06 17 29654858 29654858 G A NF1 Splice_Site p.X1870_splice 0.35 TCGA-EE-A2MT-06 17 33326328 33326328 G A LIG3 Missense_Mutation p.G706S 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MT-06 17 33520670 33520670 G A SLC35G3 Silent p.L219L 0.44 TCGA-EE-A2MT-06 17 34856752 34856752 G A MYO19 Silent p.A765A 0.43 TCGA-EE-A2MT-06 17 3524682 3524682 G C SHPK Silent p.V224V 0.39 TCGA-EE-A2MT-06 17 37187924 37187924 C G CTD-2206N4.2 5'Flank 0.44 TCGA-EE-A2MT-06 17 37333757 37333757 T C CACNB1 Missense_Mutation p.Q393R 0.40 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MT-06 17 37826577 37826577 C T PNMT Missense_Mutation p.L262F 0.41 tolerated(0.13) probably_damaging(0.988) TCGA-EE-A2MT-06 17 38416912 38416912 C T WIPF2 Silent p.I63I 0.51 TCGA-EE-A2MT-06 17 39334373 39334373 C T KRTAP4-2 Missense_Mutation p.C15Y 0.37 deleterious(0.01) unknown(0) TCGA-EE-A2MT-06 17 39525754 39525754 C T KRT33B Silent p.E83E 0.44 TCGA-EE-A2MT-06 17 39580346 39580346 C A KRT37 Nonsense_Mutation p.E144* 0.33 TCGA-EE-A2MT-06 17 3979950 3979950 G A ZZEF1 Missense_Mutation p.P1072L 0.36 tolerated(0.29) benign(0.002) TCGA-EE-A2MT-06 17 3979951 3979951 G A ZZEF1 Missense_Mutation p.P1072S 0.40 tolerated(0.63) benign(0.005) TCGA-EE-A2MT-06 17 40280339 40280339 G A RAB5C Silent p.I160I 0.42 TCGA-EE-A2MT-06 17 40456591 40456591 C T STAT5A Missense_Mutation p.S434F 0.27 deleterious(0.03) benign(0.382) TCGA-EE-A2MT-06 17 40456592 40456592 C T STAT5A Silent p.S434S 0.25 TCGA-EE-A2MT-06 17 41197632 41197632 G A BRCA1 3'Flank 0.52 TCGA-EE-A2MT-06 17 41957311 41957311 C T MPP2 Missense_Mutation p.G398S 0.38 tolerated(1) benign(0.026) TCGA-EE-A2MT-06 17 41957312 41957312 C T MPP2 Silent p.Q397Q 0.37 TCGA-EE-A2MT-06 17 42929894 42929896 GGA AG EFTUD2 Frame_Shift_Del p.S866Lfs*69 0.31 TCGA-EE-A2MT-06 17 4348463 4348463 G A SPNS3 Silent p.R134R 0.28 TCGA-EE-A2MT-06 17 43922713 43922713 C T SPPL2C Silent p.T147T 0.38 TCGA-EE-A2MT-06 17 44408852 44408852 G A LRRC37A Missense_Mutation p.M1403I 0.43 tolerated(0.4) benign(0.012) TCGA-EE-A2MT-06 17 4542411 4542411 C T ALOX15 Silent p.E118E 0.37 TCGA-EE-A2MT-06 17 46655307 46655307 G A HOXB4 Silent p.N125N 0.66 TCGA-EE-A2MT-06 17 4685877 4685877 G A TM4SF5 Missense_Mutation p.R113Q 0.33 tolerated(0.57) benign(0.019) TCGA-EE-A2MT-06 17 47394220 47394220 G A ZNF652 Missense_Mutation p.H290Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A2MT-06 17 4836950 4836950 G A GP1BA Missense_Mutation p.E351K 0.50 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 17 48598488 48598488 G A MYCBPAP Missense_Mutation p.D355N 0.45 tolerated(0.24) benign(0.056) TCGA-EE-A2MT-06 17 4862825 4862825 G A SPAG7 3'UTR 0.37 TCGA-EE-A2MT-06 17 48733283 48733283 T G ABCC3 Missense_Mutation p.W46G 0.32 deleterious(0.03) benign(0.144) TCGA-EE-A2MT-06 17 48778020 48778020 T A ANKRD40 Missense_Mutation p.L64F 0.50 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MT-06 17 4995940 4995940 C T ZFP3 Missense_Mutation p.L381F 0.42 tolerated(0.09) probably_damaging(0.987) TCGA-EE-A2MT-06 17 5076225 5076225 G A USP6 Silent p.T1391T 0.39 TCGA-EE-A2MT-06 17 56384174 56384174 G A BZRAP1 Silent p.L1713L 0.36 TCGA-EE-A2MT-06 17 57775240 57775240 G A PTRH2 Nonsense_Mutation p.R34* 0.26 TCGA-EE-A2MT-06 17 58034687 58034687 G A RNFT1 Silent p.P301P 0.39 TCGA-EE-A2MT-06 17 58300851 58300851 C T USP32 Missense_Mutation p.G510E 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A2MT-06 17 60348348 60348348 G A TBC1D3P2 RNA 0.19 TCGA-EE-A2MT-06 17 61499089 61499089 G A TANC2 Missense_Mutation p.E1916K 0.66 deleterious_low_confidence(0.04) benign(0.214) TCGA-EE-A2MT-06 17 61621705 61621705 G A KCNH6 Missense_Mutation p.E813K 0.70 tolerated_low_confidence(0.9) benign(0) TCGA-EE-A2MT-06 17 61898924 61898924 C T FTSJ3 Missense_Mutation p.R559Q 0.29 tolerated(0.34) benign(0.003) TCGA-EE-A2MT-06 17 68128209 68128209 C T KCNJ16 5'UTR 0.53 TCGA-EE-A2MT-06 17 7256413 7256413 A C KCTD11 Missense_Mutation p.Y51S 0.46 deleterious(0) probably_damaging(0.979) TCGA-EE-A2MT-06 17 7256414 7256414 C T KCTD11 Silent p.Y51Y 0.48 TCGA-EE-A2MT-06 17 72613400 72613400 G A CD300E Missense_Mutation p.P82L 0.55 deleterious(0.01) benign(0.019) TCGA-EE-A2MT-06 17 7319288 7319288 C T NLGN2 Missense_Mutation p.A499V 0.31 tolerated(0.2) probably_damaging(0.985) TCGA-EE-A2MT-06 17 73812881 73812881 C T UNK Missense_Mutation p.S331F 0.31 tolerated(0.13) benign(0.068) TCGA-EE-A2MT-06 17 73872474 73872474 C T TRIM47 Missense_Mutation p.E291K 0.19 tolerated(0.41) possibly_damaging(0.64) TCGA-EE-A2MT-06 17 74151745 74151745 G A RNF157 Silent p.V532V 0.30 TCGA-EE-A2MT-06 17 74236267 74236267 A C RNF157 Missense_Mutation p.S19A 0.19 tolerated(0.79) benign(0.001) TCGA-EE-A2MT-06 17 74288700 74288700 G A QRICH2 Missense_Mutation p.P537L 0.34 deleterious(0.02) benign(0.178) TCGA-EE-A2MT-06 17 74464885 74464885 G A AANAT Silent p.G64G 0.23 TCGA-EE-A2MT-06 17 74936821 74936821 C T MGAT5B Missense_Mutation p.S589F 0.66 deleterious(0) probably_damaging(0.975) TCGA-EE-A2MT-06 17 7611453 7611453 C T EFNB3 Silent p.L100L 0.38 TCGA-EE-A2MT-06 17 7678168 7678168 C T DNAH2 Silent p.F1531F 0.45 TCGA-EE-A2MT-06 17 76823413 76823413 G A USP36 Silent p.F201F 0.14 TCGA-EE-A2MT-06 17 7691242 7691242 G A DNAH2 Missense_Mutation p.G2223E 0.39 probably_damaging(1) TCGA-EE-A2MT-06 17 7736864 7736864 T C DNAH2 3'UTR 0.34 TCGA-EE-A2MT-06 17 79288207 79288207 C T TMEM105 Splice_Site p.X19_splice 0.19 TCGA-EE-A2MT-06 17 80038593 80038593 G A FASN Silent p.P2267P 0.33 TCGA-EE-A2MT-06 17 8508201 8508201 C T MYH10 Missense_Mutation p.E149K 0.41 possibly_damaging(0.547) TCGA-EE-A2MT-06 17 9820659 9820659 C T GAS7 Splice_Site p.X440_splice 0.37 TCGA-EE-A2MT-06 18 12325671 12325671 G A TUBB6 Missense_Mutation p.D295N 0.20 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-EE-A2MT-06 18 12325866 12325866 G A TUBB6 Missense_Mutation p.G360S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A2MT-06 18 21141479 21141479 G A NPC1 Missense_Mutation p.A159V 0.50 deleterious(0) possibly_damaging(0.63) TCGA-EE-A2MT-06 18 24440760 24440760 G A AQP4 Silent p.I223I 0.35 TCGA-EE-A2MT-06 18 28669485 28669485 G A DSC2 Missense_Mutation p.R183W 0.50 deleterious(0.04) possibly_damaging(0.809) TCGA-EE-A2MT-06 18 28737418 28737418 C T DSC1 Silent p.R89R 0.41 TCGA-EE-A2MT-06 18 28993511 28993511 C T DSG4 Nonsense_Mutation p.R1045* 0.35 TCGA-EE-A2MT-06 18 2920205 2920205 G A LPIN2 3'UTR 0.50 TCGA-EE-A2MT-06 18 29625679 29625679 C T RNF125 Missense_Mutation p.S163L 0.35 tolerated(0.11) possibly_damaging(0.672) TCGA-EE-A2MT-06 18 30093368 30093368 C G WBP11P1 RNA 0.33 TCGA-EE-A2MT-06 18 43435546 43435546 C T EPG5 Missense_Mutation p.A2517T 0.41 tolerated(0.09) probably_damaging(0.981) TCGA-EE-A2MT-06 18 44554608 44554608 T A TCEB3C Missense_Mutation p.I536F 0.04 tolerated(0.09) benign(0.102) TCGA-EE-A2MT-06 18 44559378 44559378 C T TCEB3B Missense_Mutation p.R753Q 0.38 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MT-06 18 44560508 44560508 G A TCEB3B Silent p.F376F 0.38 TCGA-EE-A2MT-06 18 46190122 46190122 G A CTIF Splice_Site p.X85_splice 0.40 TCGA-EE-A2MT-06 18 46190123 46190123 A T CTIF Missense_Mutation p.N85Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-EE-A2MT-06 18 47811394 47811394 C T CXXC1 Missense_Mutation p.G297E 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MT-06 18 48190835 48190835 C T MAPK4 Silent p.F169F 0.38 TCGA-EE-A2MT-06 18 51729293 51729293 G A MBD2 Intron 0.35 TCGA-EE-A2MT-06 18 56998729 56998729 G A LMAN1 Missense_Mutation p.P473S 0.28 tolerated(0.1) possibly_damaging(0.829) TCGA-EE-A2MT-06 18 57106807 57106807 G A CCBE1 Missense_Mutation p.P307S 0.46 tolerated(0.05) probably_damaging(0.958) TCGA-EE-A2MT-06 18 59483779 59483779 G A RNF152 5'UTR 0.22 TCGA-EE-A2MT-06 18 60036293 60036293 G A TNFRSF11A Silent p.G381G 0.49 TCGA-EE-A2MT-06 18 61383299 61383299 C T SERPINB11 Nonsense_Mutation p.Q130* 0.38 TCGA-EE-A2MT-06 18 66678186 66678186 C T CCDC102B Nonsense_Mutation p.Q427* 0.25 TCGA-EE-A2MT-06 18 70417514 70417514 C T NETO1 Missense_Mutation p.G442S 0.40 tolerated_low_confidence(0.1) possibly_damaging(0.827) TCGA-EE-A2MT-06 18 76753485 76753485 C T SALL3 Silent p.P498P 0.43 TCGA-EE-A2MT-06 19 10221439 10221439 C T PPAN Silent p.I366I 0.50 TCGA-EE-A2MT-06 19 11531507 11531507 G A CCDC151 Missense_Mutation p.S595F 0.32 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MT-06 19 11660644 11660644 G A CNN1 3'UTR 0.32 TCGA-EE-A2MT-06 19 12575435 12575435 G A ZNF709 Missense_Mutation p.S434F 0.35 tolerated(0.65) probably_damaging(0.93) TCGA-EE-A2MT-06 19 13041140 13041140 C T FARSA Missense_Mutation p.D134N 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 19 13397781 13397781 C T CACNA1A Splice_Site p.X1030_splice 0.52 TCGA-EE-A2MT-06 19 1390911 1390911 C T NDUFS7 Silent p.A90A 0.35 TCGA-EE-A2MT-06 19 14000670 14000670 G A C19orf57 Silent p.S333S 0.56 TCGA-EE-A2MT-06 19 14740884 14740884 G A EMR3 Silent p.F593F 0.44 TCGA-EE-A2MT-06 19 15366210 15366210 G A BRD4 Missense_Mutation p.P649S 0.34 possibly_damaging(0.641) TCGA-EE-A2MT-06 19 15366211 15366211 G A BRD4 Silent p.N648N 0.33 TCGA-EE-A2MT-06 19 15547870 15547870 C T WIZ Silent p.R92R 0.54 TCGA-EE-A2MT-06 19 15730326 15730326 C T AD000091.2 5'Flank 0.68 TCGA-EE-A2MT-06 19 15739113 15739113 G A CYP4F8 Intron 0.36 TCGA-EE-A2MT-06 19 16974604 16974604 C T SIN3B Silent p.F492F 0.29 TCGA-EE-A2MT-06 19 17367358 17367358 G A USHBP1 Silent p.A464A 0.40 TCGA-EE-A2MT-06 19 17373661 17373661 C T USHBP1 Silent p.G114G 0.40 TCGA-EE-A2MT-06 19 17373662 17373662 C T USHBP1 Missense_Mutation p.G114E 0.42 tolerated(0.17) benign(0.006) TCGA-EE-A2MT-06 19 18248077 18248077 C T MAST3 Silent p.P638P 0.37 TCGA-EE-A2MT-06 19 18507677 18507677 C T LRRC25 Missense_Mutation p.D33N 0.31 tolerated(0.28) benign(0) TCGA-EE-A2MT-06 19 18507678 18507678 C T LRRC25 Silent p.V32V 0.32 TCGA-EE-A2MT-06 19 18971159 18971159 C T UPF1 Nonsense_Mutation p.Q738* 0.41 TCGA-EE-A2MT-06 19 21909539 21909539 G A ZNF100 Silent p.S525S 0.30 TCGA-EE-A2MT-06 19 22154481 22154481 C T ZNF208 Missense_Mutation p.G1119S 0.38 deleterious(0.03) probably_damaging(0.95) TCGA-EE-A2MT-06 19 22941052 22941052 C T ZNF99 Missense_Mutation p.M553I 0.44 tolerated(0.35) benign(0.002) TCGA-EE-A2MT-06 19 23544818 23544818 G A ZNF91 Silent p.P321P 0.46 TCGA-EE-A2MT-06 19 3150255 3150255 G A GNA15 Missense_Mutation p.E153K 0.42 deleterious(0.01) possibly_damaging(0.795) TCGA-EE-A2MT-06 19 32843872 32843872 C T ZNF507 Missense_Mutation p.H46Y 0.39 deleterious(0) possibly_damaging(0.775) TCGA-EE-A2MT-06 19 33579090 33579090 G A GPATCH1 Missense_Mutation p.E42K 0.28 tolerated(0.06) possibly_damaging(0.633) TCGA-EE-A2MT-06 19 35512717 35512717 C T GRAMD1A Missense_Mutation p.P568S 0.32 tolerated(0.1) possibly_damaging(0.665) TCGA-EE-A2MT-06 19 35512718 35512718 C T GRAMD1A Missense_Mutation p.P568L 0.29 deleterious(0.02) possibly_damaging(0.829) TCGA-EE-A2MT-06 19 35843008 35843008 G A FFAR1 Missense_Mutation p.S185N 0.42 tolerated(0.06) possibly_damaging(0.532) TCGA-EE-A2MT-06 19 35850639 35850639 T C FFAR3 Missense_Mutation p.F283L 0.17 tolerated(0.35) benign(0.074) TCGA-EE-A2MT-06 19 35941613 35941613 T A FFAR2 3'UTR 0.54 TCGA-EE-A2MT-06 19 36219791 36219791 G T KMT2B Splice_Site p.X1563_splice 0.43 TCGA-EE-A2MT-06 19 3624103 3624104 - G CACTIN Frame_Shift_Ins p.R76Afs*37 0.31 TCGA-EE-A2MT-06 19 36278390 36278390 A G ARHGAP33 Missense_Mutation p.S814G 0.40 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A2MT-06 19 36517887 36517887 G A CLIP3 Missense_Mutation p.H123Y 0.47 deleterious(0.02) benign(0.388) TCGA-EE-A2MT-06 19 36517888 36517888 G A CLIP3 Silent p.L122L 0.49 TCGA-EE-A2MT-06 19 37642536 37642536 G A ZNF585A Silent p.F700F 0.37 TCGA-EE-A2MT-06 19 38954093 38954093 C T RYR1 Missense_Mutation p.R870W 0.33 probably_damaging(1) TCGA-EE-A2MT-06 19 39734691 39734691 G A IFNL3 Missense_Mutation p.P122L 0.46 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MT-06 19 39820263 39820263 G A GMFG Silent p.F68F 0.36 TCGA-EE-A2MT-06 19 41281685 41281685 G A MIA Silent p.Q52Q 0.31 TCGA-EE-A2MT-06 19 42341400 42341400 G A LYPD4 Silent p.F186F 0.36 TCGA-EE-A2MT-06 19 4237053 4237053 C T EBI3 Missense_Mutation p.P220S 0.37 deleterious(0.04) possibly_damaging(0.53) TCGA-EE-A2MT-06 19 42867222 42867222 C T MEGF8 Silent p.S1960S 0.33 TCGA-EE-A2MT-06 19 43371394 43371394 C T PSG1 3'UTR 0.46 TCGA-EE-A2MT-06 19 43697359 43697359 G A PSG4 3'UTR 0.35 TCGA-EE-A2MT-06 19 44251902 44251902 G A SMG9 Missense_Mutation p.P125S 0.50 tolerated(0.51) benign(0.003) TCGA-EE-A2MT-06 19 45026687 45026687 C T CEACAM20 RNA 0.35 TCGA-EE-A2MT-06 19 4513543 4513543 G A PLIN4 Silent p.V129V 0.32 TCGA-EE-A2MT-06 19 4529332 4529332 C T PLIN5 Intron 0.50 TCGA-EE-A2MT-06 19 45490615 45490615 G A CLPTM1 Silent p.K324K 0.38 TCGA-EE-A2MT-06 19 45490616 45490616 T A CLPTM1 Missense_Mutation p.S325T 0.39 deleterious(0.04) benign(0.444) TCGA-EE-A2MT-06 19 46832655 46832655 G A HIF3A Silent p.G544G 0.50 TCGA-EE-A2MT-06 19 47219569 47219569 G A PRKD2 Missense_Mutation p.P20L 0.36 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MT-06 19 47856689 47856689 C T DHX34 Silent p.R134R 0.47 TCGA-EE-A2MT-06 19 47858389 47858389 G A DHX34 Missense_Mutation p.E267K 0.41 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A2MT-06 19 48565342 48565342 G A PLA2G4C Silent p.I400I 0.40 TCGA-EE-A2MT-06 19 4902869 4902869 C T ARRDC5 Missense_Mutation p.R4K 0.46 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MT-06 19 49793439 49793439 C T SLC6A16 Missense_Mutation p.E718K 0.50 tolerated(0.21) benign(0.023) TCGA-EE-A2MT-06 19 49944628 49944628 G A SLC17A7 Silent p.F3F 0.70 TCGA-EE-A2MT-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.41 TCGA-EE-A2MT-06 19 50455624 50455624 C T SIGLEC11 Missense_Mutation p.G560D 0.43 tolerated(0.11) benign(0.079) TCGA-EE-A2MT-06 19 50463633 50463633 G A SIGLEC11 Missense_Mutation p.P169L 0.48 deleterious(0) possibly_damaging(0.854) TCGA-EE-A2MT-06 19 5111420 5111420 C T KDM4B Intron 0.33 TCGA-EE-A2MT-06 19 51768691 51768691 G A SIGLECL1 Missense_Mutation p.G31E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 19 51917062 51917062 C T SIGLEC10 Silent p.P575P 0.35 TCGA-EE-A2MT-06 19 52002861 52002861 C T SIGLEC12 Silent p.T306T 0.47 TCGA-EE-A2MT-06 19 52003339 52003339 C T SIGLEC12 Missense_Mutation p.D215N 0.39 deleterious(0.03) possibly_damaging(0.497) TCGA-EE-A2MT-06 19 52004896 52004896 G A SIGLEC12 Missense_Mutation p.S31F 0.22 tolerated(0.09) possibly_damaging(0.831) TCGA-EE-A2MT-06 19 52496182 52496182 G T ZNF615 Missense_Mutation p.A727D 0.45 deleterious(0.01) possibly_damaging(0.489) TCGA-EE-A2MT-06 19 52955190 52955190 G A ZNF578 5'Flank 0.33 TCGA-EE-A2MT-06 19 53013881 53013881 G A ZNF578 Missense_Mutation p.E83K 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A2MT-06 19 53571903 53571903 C T ZNF160 Silent p.K628K 0.43 TCGA-EE-A2MT-06 19 53572715 53572715 T C ZNF160 Missense_Mutation p.T358A 0.39 tolerated(0.98) benign(0.079) TCGA-EE-A2MT-06 19 54634798 54634798 T C PRPF31 Missense_Mutation p.Y479H 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 19 55143953 55143953 C T LILRB1 Missense_Mutation p.P234S 0.38 tolerated(0.13) benign(0.047) TCGA-EE-A2MT-06 19 55178170 55178170 G A LILRB4 Silent p.Q337Q 0.39 TCGA-EE-A2MT-06 19 55221349 55221349 G A AC098784.2 3'Flank 0.37 TCGA-EE-A2MT-06 19 55496441 55496441 C T NLRP2 Missense_Mutation p.P686L 0.37 tolerated(0.52) benign(0.209) TCGA-EE-A2MT-06 19 56487619 56487619 C T NLRP8 Silent p.I942I 0.41 TCGA-EE-A2MT-06 19 57134054 57134054 C T ZNF71 Nonsense_Mutation p.R467* 0.25 TCGA-EE-A2MT-06 19 57640800 57640800 G A USP29 Missense_Mutation p.G253S 0.34 tolerated(0.39) benign(0.005) TCGA-EE-A2MT-06 19 57967429 57967429 G A VN1R1 Silent p.L142L 0.40 TCGA-EE-A2MT-06 19 58145224 58145224 C T ZNF211 Intron 0.21 TCGA-EE-A2MT-06 19 58190091 58190091 A C ZSCAN4 Missense_Mutation p.K374Q 0.37 tolerated(0.22) benign(0.012) TCGA-EE-A2MT-06 19 58946315 58946315 C T ZNF132 Missense_Mutation p.G166R 0.39 tolerated(0.42) benign(0.005) TCGA-EE-A2MT-06 19 6454000 6454000 G A SLC25A23 Missense_Mutation p.P299S 0.28 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A2MT-06 19 6709731 6709731 G A C3 Silent p.F603F 0.39 TCGA-EE-A2MT-06 19 7075063 7075063 C T ZNF557 5'UTR 0.38 TCGA-EE-A2MT-06 19 746457 746457 C T PALM Silent p.S269S 0.53 TCGA-EE-A2MT-06 19 746458 746458 C T PALM Missense_Mutation p.R270W 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 19 7605065 7605065 C T PNPLA6 Silent p.F204F 0.44 TCGA-EE-A2MT-06 19 7619498 7619498 C T PNPLA6 Silent p.I851I 0.34 TCGA-EE-A2MT-06 19 7677206 7677206 G A CAMSAP3 Silent p.E636E 0.15 TCGA-EE-A2MT-06 19 8154797 8154797 G A FBN3 Silent p.G2077G 0.21 TCGA-EE-A2MT-06 19 9213398 9213398 G A OR7G2 Silent p.I195I 0.44 TCGA-EE-A2MT-06 19 9213689 9213689 C T OR7G2 Silent p.T98T 0.38 TCGA-EE-A2MT-06 19 9578517 9578517 G A ZNF560 Missense_Mutation p.T369I 0.41 tolerated(0.32) probably_damaging(0.961) TCGA-EE-A2MT-06 1 107950325 107950325 T G NTNG1 Missense_Mutation p.I361S 0.50 tolerated(0.24) benign(0.004) TCGA-EE-A2MT-06 1 109888410 109888410 C T SORT1 Missense_Mutation p.G309E 0.41 tolerated(0.45) benign(0.072) TCGA-EE-A2MT-06 1 110741021 110741021 T A SLC6A17 Nonsense_Mutation p.Y713* 0.55 TCGA-EE-A2MT-06 1 111825688 111825688 C T CHIAP2 RNA 0.35 TCGA-EE-A2MT-06 1 114495411 114495413 TAC AA HIPK1 Nonsense_Mutation p.L367* 0.26 TCGA-EE-A2MT-06 1 115219982 115219982 G A AMPD1 Missense_Mutation p.P493S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 115276684 115276687 AGTG - CSDE1 Frame_Shift_Del p.H258Ifs*8 0.31 TCGA-EE-A2MT-06 1 118165667 118165667 G A FAM46C Silent p.L59L 0.36 TCGA-EE-A2MT-06 1 120056668 120056668 G A HSD3B1 Silent p.L174L 0.43 TCGA-EE-A2MT-06 1 120307026 120307026 C T HMGCS2 Missense_Mutation p.V110M 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MT-06 1 120307027 120307027 C T HMGCS2 Silent p.V109V 0.36 TCGA-EE-A2MT-06 1 120438853 120438853 C T ADAM30 Missense_Mutation p.G36E 0.41 deleterious(0.01) benign(0.04) TCGA-EE-A2MT-06 1 120438854 120438854 C T ADAM30 Missense_Mutation p.G36R 0.41 tolerated(0.07) benign(0.001) TCGA-EE-A2MT-06 1 12628405 12628405 G C DHRS3 Silent p.T291T 0.48 TCGA-EE-A2MT-06 1 1271705 1271705 C T DVL1 Silent p.S610S 0.39 TCGA-EE-A2MT-06 1 143767518 143767518 G A PPIAL4G Nonsense_Mutation p.Q111* 0.08 TCGA-EE-A2MT-06 1 149882239 149882239 C T SV2A Missense_Mutation p.M324I 0.24 tolerated(0.11) benign(0.304) TCGA-EE-A2MT-06 1 149885503 149885503 G A SV2A 5'UTR 0.17 TCGA-EE-A2MT-06 1 149905831 149905831 G A MTMR11 Missense_Mutation p.P230S 0.49 tolerated(0.4) benign(0.095) TCGA-EE-A2MT-06 1 150258992 150258992 C T C1orf51 Missense_Mutation p.H262Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 1 151755429 151755429 G A TDRKH Missense_Mutation p.P24S 0.41 tolerated(0.5) probably_damaging(0.999) TCGA-EE-A2MT-06 1 151787076 151787076 C T RORC Missense_Mutation p.E303K 0.35 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MT-06 1 151787077 151787077 C T RORC Silent p.R302R 0.33 TCGA-EE-A2MT-06 1 152195625 152195625 T C HRNR Silent p.E35E 0.37 TCGA-EE-A2MT-06 1 152278879 152278879 G T FLG Missense_Mutation p.S2828Y 0.26 possibly_damaging(0.54) TCGA-EE-A2MT-06 1 152286710 152286710 C T FLG Missense_Mutation p.E218K 0.11 possibly_damaging(0.637) TCGA-EE-A2MT-06 1 152323795 152323795 C T FLG2 Missense_Mutation p.R2156K 0.21 possibly_damaging(0.703) TCGA-EE-A2MT-06 1 152800159 152800159 C T LCE1A Missense_Mutation p.H71Y 0.51 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MT-06 1 153905487 153905487 G A DENND4B Missense_Mutation p.S1158F 0.25 deleterious(0) possibly_damaging(0.853) TCGA-EE-A2MT-06 1 155920179 155920179 G A ARHGEF2 Missense_Mutation p.P933L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A2MT-06 1 156203421 156203421 G A PMF1 Silent p.E90E 0.19 TCGA-EE-A2MT-06 1 156883008 156883008 C T PEAR1 Silent p.H815H 0.61 TCGA-EE-A2MT-06 1 157494225 157494225 G A FCRL5 Missense_Mutation p.H695Y 0.16 deleterious(0.03) possibly_damaging(0.6) TCGA-EE-A2MT-06 1 158632726 158632726 C T SPTA1 Missense_Mutation p.D744N 0.24 tolerated(0.05) benign(0.053) TCGA-EE-A2MT-06 1 158639499 158639499 C T SPTA1 Silent p.G559G 0.16 TCGA-EE-A2MT-06 1 159683428 159683428 C T CRP Missense_Mutation p.E188K 0.20 tolerated(0.18) possibly_damaging(0.757) TCGA-EE-A2MT-06 1 160261985 160261985 C T COPA Silent p.K997K 0.68 TCGA-EE-A2MT-06 1 161044516 161044516 C T PVRL4 Silent p.V295V 0.22 TCGA-EE-A2MT-06 1 161140536 161140536 C T PPOX Missense_Mutation p.H409Y 0.78 tolerated(1) benign(0.002) TCGA-EE-A2MT-06 1 161203046 161203058 ACTCAGTTGCACA - NR1I3 Frame_Shift_Del p.V104Rfs*6 0.44 TCGA-EE-A2MT-06 1 161476146 161476146 G A FCGR2A Silent p.L43L 0.29 TCGA-EE-A2MT-06 1 16259360 16259360 C T SPEN Nonsense_Mutation p.Q2209* 0.36 TCGA-EE-A2MT-06 1 165218805 165218805 C T LMX1A Silent p.K112K 0.28 TCGA-EE-A2MT-06 1 167741625 167741625 T - MPZL1 Frame_Shift_Del p.N124Kfs*32 0.14 TCGA-EE-A2MT-06 1 169272414 169272414 G A NME7 Missense_Mutation p.H137Y 0.14 tolerated(1) benign(0.002) TCGA-EE-A2MT-06 1 169699598 169699598 C T SELE Nonsense_Mutation p.W230* 0.23 TCGA-EE-A2MT-06 1 169699599 169699599 C T SELE Nonsense_Mutation p.W230* 0.22 TCGA-EE-A2MT-06 1 171561164 171561164 A C PRRC2C 3'UTR 0.54 TCGA-EE-A2MT-06 1 177225096 177225096 G A BRINP2 Missense_Mutation p.R104K 0.18 tolerated(0.26) benign(0.03) TCGA-EE-A2MT-06 1 177225097 177225097 G A BRINP2 Silent p.R104R 0.18 TCGA-EE-A2MT-06 1 177250701 177250701 C T BRINP2 3'UTR 0.42 TCGA-EE-A2MT-06 1 179660154 179660154 T C TDRD5 3'UTR 0.26 TCGA-EE-A2MT-06 1 18152851 18152851 G A ACTL8 Missense_Mutation p.R313K 0.45 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 1 186014957 186014957 C T HMCN1 Missense_Mutation p.P2148S 0.19 probably_damaging(0.998) TCGA-EE-A2MT-06 1 19464561 19464561 C T UBR4 Missense_Mutation p.G2949E 0.41 possibly_damaging(0.625) TCGA-EE-A2MT-06 1 19499520 19499520 G A UBR4 Missense_Mutation p.S1120F 0.35 benign(0.081) TCGA-EE-A2MT-06 1 196695740 196695740 C T CFH Nonsense_Mutation p.Q672* 0.17 TCGA-EE-A2MT-06 1 196928252 196928252 G A CFHR2 3'UTR 0.67 TCGA-EE-A2MT-06 1 197021920 197021920 C T F13B Missense_Mutation p.E467K 0.14 deleterious(0.01) possibly_damaging(0.721) TCGA-EE-A2MT-06 1 197446914 197446914 C T CRB1 Nonsense_Mutation p.Q1376* 0.20 TCGA-EE-A2MT-06 1 198701456 198701456 C T PTPRC Missense_Mutation p.P668S 0.20 tolerated(1) benign(0.002) TCGA-EE-A2MT-06 1 200008808 200008808 C T NR5A2 Silent p.H29H 0.17 TCGA-EE-A2MT-06 1 201981877 201981877 C T ELF3 Silent p.V196V 0.75 TCGA-EE-A2MT-06 1 202936337 202936337 G A CYB5R1 5'UTR 0.60 TCGA-EE-A2MT-06 1 206903358 206903358 C T MAPKAPK2 Silent p.I202I 0.21 TCGA-EE-A2MT-06 1 207504512 207504512 C T CD55 Missense_Mutation p.H242Y 0.18 tolerated(0.11) benign(0.231) TCGA-EE-A2MT-06 1 209968651 209968651 G A IRF6 Silent p.P164P 0.68 TCGA-EE-A2MT-06 1 213415166 213415166 C T RPS6KC1 Missense_Mutation p.H783Y 0.44 tolerated(0.3) benign(0.065) TCGA-EE-A2MT-06 1 214170398 214170398 C T PROX1 Missense_Mutation p.R174W 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 222734783 222734783 C G TAF1A Missense_Mutation p.W388S 0.42 tolerated(0.19) benign(0.302) TCGA-EE-A2MT-06 1 223285080 223285080 C T TLR5 Missense_Mutation p.E432K 0.51 tolerated(0.11) benign(0.022) TCGA-EE-A2MT-06 1 223285573 223285573 G A TLR5 Silent p.A267A 0.40 TCGA-EE-A2MT-06 1 223984229 223984229 G A TP53BP2 Missense_Mutation p.S671F 0.69 deleterious(0.01) benign(0.265) TCGA-EE-A2MT-06 1 228238405 228238405 C T WNT3A Missense_Mutation p.A121V 0.65 tolerated(0.33) possibly_damaging(0.483) TCGA-EE-A2MT-06 1 228238406 228238406 C T WNT3A Silent p.A121A 0.63 TCGA-EE-A2MT-06 1 228559597 228559597 G A OBSCN Missense_Mutation p.G7997S 0.21 benign(0.173) TCGA-EE-A2MT-06 1 229779425 229779425 G A URB2 Nonsense_Mutation p.W1260* 0.18 TCGA-EE-A2MT-06 1 23107967 23107967 C T EPHB2 Missense_Mutation p.P39S 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A2MT-06 1 231360208 231360208 A G C1orf131 Intron 0.21 TCGA-EE-A2MT-06 1 232649942 232649942 C T SIPA1L2 Missense_Mutation p.G382R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 233122283 233122283 C T PCNXL2 Missense_Mutation p.R1932K 0.25 tolerated(0.06) benign(0.006) TCGA-EE-A2MT-06 1 2332314 2332314 C T RER1 Missense_Mutation p.P102L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 237778111 237778111 C T RYR2 Nonsense_Mutation p.Q1895* 0.52 TCGA-EE-A2MT-06 1 240371065 240371065 G A FMN2 Missense_Mutation p.G985S 0.23 unknown(0) TCGA-EE-A2MT-06 1 240371651 240371651 C T FMN2 Missense_Mutation p.P1180L 0.68 unknown(0) TCGA-EE-A2MT-06 1 24130967 24130967 G A HMGCL Missense_Mutation p.P267S 0.37 deleterious(0) possibly_damaging(0.758) TCGA-EE-A2MT-06 1 242253243 242253243 C T PLD5 Silent p.P508P 0.55 TCGA-EE-A2MT-06 1 243456409 243456409 C T SDCCAG8 Missense_Mutation p.S188F 0.39 deleterious(0.03) benign(0.066) TCGA-EE-A2MT-06 1 24398477 24398477 G A MYOM3 Missense_Mutation p.H999Y 0.49 tolerated(0.23) possibly_damaging(0.754) TCGA-EE-A2MT-06 1 247588406 247588406 C T NLRP3 Missense_Mutation p.P554L 0.15 tolerated(0.11) benign(0.033) TCGA-EE-A2MT-06 1 247752256 247752256 G A OR2G2 Missense_Mutation p.E199K 0.47 deleterious(0.01) benign(0.117) TCGA-EE-A2MT-06 1 247752608 247752608 T A OR2G2 Missense_Mutation p.I316N 0.63 deleterious_low_confidence(0) unknown(0) TCGA-EE-A2MT-06 1 248004539 248004539 G A OR11L1 Silent p.F220F 0.20 TCGA-EE-A2MT-06 1 248402326 248402326 G A OR2M4 Silent p.L32L 0.21 TCGA-EE-A2MT-06 1 248402327 248402327 G A OR2M4 Missense_Mutation p.G33S 0.21 tolerated(0.5) benign(0.023) TCGA-EE-A2MT-06 1 248684978 248684978 G A OR2G6 Missense_Mutation p.G11R 0.21 deleterious(0.04) benign(0.077) TCGA-EE-A2MT-06 1 29610486 29610486 A C PTPRU Missense_Mutation p.K726T 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 1 31194271 31194271 C T MATN1 Missense_Mutation p.R141K 0.36 tolerated(1) benign(0.005) TCGA-EE-A2MT-06 1 32279891 32279891 C T SPOCD1 Silent p.R348R 0.55 TCGA-EE-A2MT-06 1 34090703 34090703 G A CSMD2 Silent p.L1776L 0.34 TCGA-EE-A2MT-06 1 36558091 36558091 C T ADPRHL2 Missense_Mutation p.S257L 0.32 tolerated(0.2) benign(0.003) TCGA-EE-A2MT-06 1 40033455 40033455 A G PABPC4 Missense_Mutation p.F314L 0.39 deleterious(0.02) possibly_damaging(0.836) TCGA-EE-A2MT-06 1 43773225 43773225 G A TIE1 Missense_Mutation p.G299R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 43779533 43779533 C T TIE1 Missense_Mutation p.S768F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MT-06 1 47365968 47365968 G A CYP4Z2P RNA 0.32 TCGA-EE-A2MT-06 1 51754542 51754542 C T TTC39A Missense_Mutation p.E531K 0.50 tolerated(0.1) possibly_damaging(0.736) TCGA-EE-A2MT-06 1 54258908 54258908 G A NDC1 Silent p.F543F 0.45 TCGA-EE-A2MT-06 1 54360021 54360021 G A DIO1 Silent p.E46E 0.39 TCGA-EE-A2MT-06 1 55518359 55518359 G A PCSK9 Missense_Mutation p.G232R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 6046249 6046249 A T NPHP4 Missense_Mutation p.V34D 0.38 deleterious(0) probably_damaging(0.956) TCGA-EE-A2MT-06 1 63084515 63084515 G A DOCK7 Missense_Mutation p.P515L 0.41 deleterious(0.02) benign(0.333) TCGA-EE-A2MT-06 1 6529656 6529656 G A PLEKHG5 Silent p.I706I 0.36 TCGA-EE-A2MT-06 1 68910229 68910229 C T RPE65 Silent p.L160L 0.37 TCGA-EE-A2MT-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.37 tolerated(0.27) benign(0.035) TCGA-EE-A2MT-06 1 76313948 76313948 C T MSH4 Missense_Mutation p.P406L 0.39 deleterious(0) possibly_damaging(0.665) TCGA-EE-A2MT-06 1 78958579 78958579 C T PTGFR Missense_Mutation p.L51F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 1 85648237 85648237 C T SYDE2 Silent p.R696R 0.43 TCGA-EE-A2MT-06 1 86905990 86905990 G A CLCA2 Missense_Mutation p.E455K 0.51 tolerated(0.21) possibly_damaging(0.811) TCGA-EE-A2MT-06 1 91382389 91382389 G A ZNF644 Missense_Mutation p.S1317L 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 20 10393632 10393632 C T MKKS Silent p.L177L 0.38 TCGA-EE-A2MT-06 20 1532579 1532579 C T SIRPD Missense_Mutation p.G60E 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 20 2816191 2816191 G A PCED1A Missense_Mutation p.R428W 0.29 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-EE-A2MT-06 20 2816192 2816192 C A PCED1A Missense_Mutation p.Q427H 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A2MT-06 20 30037904 30037904 T A DEFB123 Missense_Mutation p.V44D 0.38 deleterious(0) unknown(0) TCGA-EE-A2MT-06 20 30436348 30436348 A G FOXS1 5'Flank 0.31 TCGA-EE-A2MT-06 20 31024037 31024037 G A ASXL1 Silent p.K1174K 0.43 TCGA-EE-A2MT-06 20 31024038 31024038 G A ASXL1 Missense_Mutation p.E1175K 0.44 tolerated(0.07) benign(0.159) TCGA-EE-A2MT-06 20 32267568 32267568 G A E2F1 Nonsense_Mutation p.Q189* 0.45 TCGA-EE-A2MT-06 20 34022706 34022706 C T GDF5OS Silent p.F250F 0.50 TCGA-EE-A2MT-06 20 34778562 34778562 C T EPB41L1 Silent p.P381P 0.40 TCGA-EE-A2MT-06 20 35269708 35269708 G A SLA2 Silent p.L11L 0.38 TCGA-EE-A2MT-06 20 35269709 35269709 A C SLA2 Silent p.S10S 0.39 TCGA-EE-A2MT-06 20 36407653 36407653 C T CTNNBL1 Missense_Mutation p.S316F 0.45 deleterious(0) possibly_damaging(0.467) TCGA-EE-A2MT-06 20 40790139 40790139 G A PTPRT Silent p.I845I 0.43 TCGA-EE-A2MT-06 20 42169782 42169782 C T L3MBTL1 3'UTR 0.46 TCGA-EE-A2MT-06 20 42354942 42354942 C T GTSF1L Silent p.T131T 0.48 TCGA-EE-A2MT-06 20 42693450 42693450 G A TOX2 Missense_Mutation p.E305K 0.30 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MT-06 20 42806611 42806611 C T JPH2 Intron 0.37 TCGA-EE-A2MT-06 20 44665398 44665398 T C SLC12A5 Missense_Mutation p.S172P 0.40 deleterious(0.01) possibly_damaging(0.768) TCGA-EE-A2MT-06 20 45353731 45353731 G T SLC2A10 Missense_Mutation p.G19V 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 20 47570183 47570183 C T ARFGEF2 Missense_Mutation p.R232C 0.36 tolerated(0.09) benign(0.183) TCGA-EE-A2MT-06 20 50408550 50408550 C T SALL4 Missense_Mutation p.E158K 0.57 tolerated(0.13) probably_damaging(0.993) TCGA-EE-A2MT-06 20 52645101 52645101 G A BCAS1 Missense_Mutation p.P185S 0.56 tolerated(0.11) possibly_damaging(0.878) TCGA-EE-A2MT-06 20 55027196 55027196 C T CASS4 Missense_Mutation p.P322S 0.26 tolerated(0.29) benign(0.01) TCGA-EE-A2MT-06 20 56136663 56136663 C T PCK1 Missense_Mutation p.L66F 0.55 tolerated(0.75) benign(0.02) TCGA-EE-A2MT-06 20 56934664 56934664 C T RAB22A Nonsense_Mutation p.R164* 0.58 TCGA-EE-A2MT-06 20 57875857 57875857 G A EDN3 5'UTR 0.50 TCGA-EE-A2MT-06 20 60791346 60791346 G A HRH3 Missense_Mutation p.R352W 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 20 6088183 6088183 G A FERMT1 Missense_Mutation p.P282L 0.25 deleterious(0.04) possibly_damaging(0.789) TCGA-EE-A2MT-06 20 60900498 60900498 C T LAMA5 Silent p.Q1801Q 0.45 TCGA-EE-A2MT-06 20 60910129 60910129 G A LAMA5 Silent p.S810S 0.41 TCGA-EE-A2MT-06 20 61150795 61150795 G A C20orf166 5'UTR 0.59 TCGA-EE-A2MT-06 20 62202103 62202103 C T HELZ2 Missense_Mutation p.G133R 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 20 8722119 8722119 G A PLCB1 Missense_Mutation p.E808K 0.37 tolerated(0.23) benign(0.139) TCGA-EE-A2MT-06 20 9496135 9496135 G A LAMP5 Missense_Mutation p.E34K 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 21 10914431 10914431 C T TPTE Missense_Mutation p.D430N 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A2MT-06 21 11039151 11039151 C T BAGE2 RNA 0.08 TCGA-EE-A2MT-06 21 15561684 15561684 C T LIPI Missense_Mutation p.D56N 0.46 tolerated(0.13) probably_damaging(0.975) TCGA-EE-A2MT-06 21 18937815 18937815 C T CXADR Silent p.S301S 0.43 TCGA-EE-A2MT-06 21 27840800 27840800 G A CYYR1 3'UTR 0.40 TCGA-EE-A2MT-06 21 28337755 28337755 A C ADAMTS5 Missense_Mutation p.V319G 0.41 deleterious(0) possibly_damaging(0.834) TCGA-EE-A2MT-06 21 31538540 31538540 G A CLDN17 Silent p.F132F 0.37 TCGA-EE-A2MT-06 21 33949090 33949091 - C TCP10L Frame_Shift_Ins p.V215Cfs*49 0.45 TCGA-EE-A2MT-06 21 41648186 41648186 G A DSCAM Missense_Mutation p.P732S 0.52 tolerated(0.17) benign(0.439) TCGA-EE-A2MT-06 21 41741060 41741060 C T DSCAM Silent p.T207T 0.32 TCGA-EE-A2MT-06 21 45655426 45655426 G A ICOSLG Silent p.V142V 0.36 TCGA-EE-A2MT-06 21 45711083 45711083 G A AIRE Missense_Mutation p.E329K 0.43 tolerated(0.14) benign(0.033) TCGA-EE-A2MT-06 21 46326910 46326910 C T ITGB2 Missense_Mutation p.S83N 0.36 tolerated(0.4) benign(0.237) TCGA-EE-A2MT-06 21 46685627 46685627 G A POFUT2 Intron 0.46 TCGA-EE-A2MT-06 21 47545378 47545378 G A COL6A2 Splice_Site p.X606_splice 0.39 TCGA-EE-A2MT-06 21 47831873 47831873 C T PCNT Silent p.P1962P 0.47 TCGA-EE-A2MT-06 22 18644647 18644647 G A USP18 Silent p.Q115Q 0.34 TCGA-EE-A2MT-06 22 19965018 19965018 G A ARVCF Missense_Mutation p.P597L 0.40 tolerated(0.29) benign(0.015) TCGA-EE-A2MT-06 22 24810499 24810499 C T SPECC1L Intron 0.43 TCGA-EE-A2MT-06 22 25623912 25623912 G A CRYBB2 Missense_Mutation p.R89Q 0.43 tolerated(0.3) benign(0.007) TCGA-EE-A2MT-06 22 25625498 25625498 C T CRYBB2 Silent p.A134A 0.50 TCGA-EE-A2MT-06 22 29445668 29445668 C T ZNRF3 Missense_Mutation p.P500L 0.47 tolerated(0.06) benign(0.009) TCGA-EE-A2MT-06 22 30127091 30127091 G A ZMAT5 3'UTR 0.47 TCGA-EE-A2MT-06 22 30860826 30860826 C T SEC14L3 Silent p.R215R 0.45 TCGA-EE-A2MT-06 22 30887849 30887849 C T SEC14L4 Missense_Mutation p.E295K 0.42 deleterious(0.01) possibly_damaging(0.757) TCGA-EE-A2MT-06 22 30890867 30890867 C T SEC14L4 Missense_Mutation p.E169K 0.42 deleterious(0.02) probably_damaging(0.964) TCGA-EE-A2MT-06 22 37491976 37491976 C T TMPRSS6 Missense_Mutation p.E196K 0.53 tolerated(0.44) benign(0.01) TCGA-EE-A2MT-06 22 38209569 38209569 C T GCAT Missense_Mutation p.R203C 0.43 deleterious(0.02) benign(0.022) TCGA-EE-A2MT-06 22 44342710 44342710 C T PNPLA3 3'UTR 0.30 TCGA-EE-A2MT-06 22 46655116 46655116 T C PKDREJ Silent p.K1368K 0.45 TCGA-EE-A2MT-06 22 46930583 46930583 G A CELSR1 Nonsense_Mutation p.Q829* 0.43 TCGA-EE-A2MT-06 22 50280697 50280697 C T ZBED4 Silent p.V1129V 0.29 TCGA-EE-A2MT-06 22 50479665 50479665 A C TTLL8 Intron 0.46 TCGA-EE-A2MT-06 22 50563979 50563979 G A MOV10L1 Silent p.G576G 0.34 TCGA-EE-A2MT-06 22 50724696 50724696 G A PLXNB2 Nonsense_Mutation p.Q595* 0.41 TCGA-EE-A2MT-06 22 51048686 51048686 T G MAPK8IP2 Missense_Mutation p.C783G 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 2 103011085 103011085 G A IL18R1 Missense_Mutation p.G423E 0.46 deleterious(0) probably_damaging(0.976) TCGA-EE-A2MT-06 2 103013227 103013227 G A IL18R1 Missense_Mutation p.D503N 0.41 deleterious(0.05) possibly_damaging(0.47) TCGA-EE-A2MT-06 2 103281732 103281732 C T SLC9A2 Silent p.I309I 0.50 TCGA-EE-A2MT-06 2 108488493 108488493 G C RGPD4 Missense_Mutation p.V1345L 0.33 deleterious(0) possibly_damaging(0.574) TCGA-EE-A2MT-06 2 10866671 10866671 G A ATP6V1C2 Missense_Mutation p.G58E 0.34 deleterious(0.04) benign(0.143) TCGA-EE-A2MT-06 2 10866672 10866672 G T ATP6V1C2 Silent p.G58G 0.34 TCGA-EE-A2MT-06 2 113940600 113940600 C T PSD4 Silent p.P189P 0.43 TCGA-EE-A2MT-06 2 119727733 119727733 C T MARCO Silent p.F81F 0.38 TCGA-EE-A2MT-06 2 119915271 119915271 G A C1QL2 Missense_Mutation p.T192M 0.20 deleterious(0) possibly_damaging(0.658) TCGA-EE-A2MT-06 2 119915272 119915272 T A C1QL2 Missense_Mutation p.T192S 0.21 tolerated(0.52) benign(0.206) TCGA-EE-A2MT-06 2 120438540 120438540 C T TMEM177 Silent p.F37F 0.44 TCGA-EE-A2MT-06 2 121745787 121745787 C T GLI2 Missense_Mutation p.S766F 0.39 deleterious(0.02) possibly_damaging(0.506) TCGA-EE-A2MT-06 2 1271289 1271289 C T SNTG2 Silent p.A410A 0.29 TCGA-EE-A2MT-06 2 128178999 128178999 G A PROC Missense_Mutation p.E71K 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 2 130899720 130899720 G A CCDC74B Missense_Mutation p.S177F 0.28 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MT-06 2 131521567 131521567 C T AMER3 Missense_Mutation p.S641F 0.54 tolerated(0.1) benign(0.022) TCGA-EE-A2MT-06 2 136561681 136561681 C G LCT Missense_Mutation p.W1494C 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MT-06 2 149221445 149221445 C T MBD5 Silent p.A118A 0.27 TCGA-EE-A2MT-06 2 152319619 152319619 C T RIF1 Silent p.F1195F 0.34 TCGA-EE-A2MT-06 2 152501044 152501044 C T NEB Missense_Mutation p.D2528N 0.48 possibly_damaging(0.82) TCGA-EE-A2MT-06 2 152550915 152550915 C T NEB Silent p.G606G 0.43 TCGA-EE-A2MT-06 2 15307200 15307200 G A NBAS Missense_Mutation p.A2363V 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MT-06 2 15432747 15432747 G A NBAS Silent p.I1647I 0.41 TCGA-EE-A2MT-06 2 160194130 160194130 G A BAZ2B Silent p.L1870L 0.41 TCGA-EE-A2MT-06 2 160194131 160194131 G A BAZ2B Silent p.P1869P 0.40 TCGA-EE-A2MT-06 2 167263157 167263157 C T SCN7A Splice_Site p.X1328_splice 0.44 TCGA-EE-A2MT-06 2 167760167 167760167 C T XIRP2 Missense_Mutation p.P59S 0.39 benign(0.01) TCGA-EE-A2MT-06 2 168101932 168101932 C T XIRP2 Missense_Mutation p.H1344Y 0.45 probably_damaging(0.972) TCGA-EE-A2MT-06 2 170510670 170510670 C T CCDC173 Missense_Mutation p.E292K 0.50 deleterious(0) benign(0.445) TCGA-EE-A2MT-06 2 173337567 173337567 C A ITGA6 Intron 0.25 TCGA-EE-A2MT-06 2 174104179 174104179 G A MLTK Silent p.L438L 0.35 TCGA-EE-A2MT-06 2 174104180 174104180 G A MLTK Missense_Mutation p.E439K 0.33 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A2MT-06 2 175742644 175742644 T C CHN1 Missense_Mutation p.K158R 0.52 tolerated(0.5) benign(0.03) TCGA-EE-A2MT-06 2 178936668 178936668 G A PDE11A Missense_Mutation p.P166L 0.41 deleterious(0) possibly_damaging(0.908) TCGA-EE-A2MT-06 2 179238631 179238631 C T OSBPL6 Silent p.I495I 0.40 TCGA-EE-A2MT-06 2 179407083 179407083 C T TTN Missense_Mutation p.G32467E 0.39 TCGA-EE-A2MT-06 2 179433243 179433243 A T TTN Silent p.V25872V 0.46 TCGA-EE-A2MT-06 2 179441663 179441663 C T TTN Missense_Mutation p.M23133I 0.42 TCGA-EE-A2MT-06 2 179444752 179444752 C A TTN Missense_Mutation p.G22421V 0.47 TCGA-EE-A2MT-06 2 179444753 179444753 C T TTN Missense_Mutation p.G22421R 0.45 TCGA-EE-A2MT-06 2 179454889 179454889 C T TTN Silent p.K20521K 0.42 TCGA-EE-A2MT-06 2 179457237 179457237 C T TTN Missense_Mutation p.R19832K 0.41 TCGA-EE-A2MT-06 2 179458760 179458760 A C TTN Missense_Mutation p.S19454A 0.31 TCGA-EE-A2MT-06 2 179474049 179474049 C T TTN Missense_Mutation p.G17330R 0.29 TCGA-EE-A2MT-06 2 179497991 179497991 G A TTN Missense_Mutation p.H14337Y 0.43 TCGA-EE-A2MT-06 2 179528791 179528791 C T TTN Silent p.K12105K 0.42 TCGA-EE-A2MT-06 2 179542444 179542444 G A TTN Missense_Mutation p.P11399S 0.42 TCGA-EE-A2MT-06 2 179566919 179566919 C T TTN Missense_Mutation p.A10163T 0.36 TCGA-EE-A2MT-06 2 179580331 179580331 C T TTN Missense_Mutation p.V8604M 0.35 TCGA-EE-A2MT-06 2 179581966 179581966 C T TTN Missense_Mutation p.G8499R 0.33 TCGA-EE-A2MT-06 2 179587434 179587434 C T TTN Missense_Mutation p.E7398K 0.33 TCGA-EE-A2MT-06 2 179616204 179616204 G A TTN Intron 0.45 TCGA-EE-A2MT-06 2 179629430 179629430 G A TTN Missense_Mutation p.S3271F 0.40 TCGA-EE-A2MT-06 2 179714790 179714790 C T CCDC141 Missense_Mutation p.E1115K 0.38 tolerated(0.47) benign(0.026) TCGA-EE-A2MT-06 2 17997862 17997862 C T MSGN1 Missense_Mutation p.S26F 0.30 deleterious(0) possibly_damaging(0.48) TCGA-EE-A2MT-06 2 183070667 183070667 C T PDE1A Missense_Mutation p.R317K 0.24 tolerated(0.12) possibly_damaging(0.607) TCGA-EE-A2MT-06 2 183291361 183291361 A G PDE1A Intron 0.35 TCGA-EE-A2MT-06 2 187627382 187627382 C T FAM171B Silent p.I771I 0.33 TCGA-EE-A2MT-06 2 189850473 189850473 G A COL3A1 Missense_Mutation p.G139E 0.44 unknown(0) TCGA-EE-A2MT-06 2 189931456 189931456 G A COL5A2 Missense_Mutation p.P485L 0.37 possibly_damaging(0.793) TCGA-EE-A2MT-06 2 190922148 190922148 G A MSTN Missense_Mutation p.P322S 0.49 deleterious(0) possibly_damaging(0.632) TCGA-EE-A2MT-06 2 191872349 191872349 G A STAT1 Silent p.I104I 0.29 TCGA-EE-A2MT-06 2 196788389 196788389 G A DNAH7 Missense_Mutation p.S1252L 0.50 tolerated(0.39) benign(0) TCGA-EE-A2MT-06 2 201462197 201462197 G A AOX1 Missense_Mutation p.G93E 0.40 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A2MT-06 2 202050821 202050821 C T CASP10 Silent p.P107P 0.33 TCGA-EE-A2MT-06 2 202093818 202093818 G A CASP10 3'UTR 0.37 TCGA-EE-A2MT-06 2 203644136 203644136 G A ICA1L 3'UTR 0.64 TCGA-EE-A2MT-06 2 21227313 21227313 C T APOB Missense_Mutation p.G3972E 0.38 benign(0.002) TCGA-EE-A2MT-06 2 213872467 213872467 G A IKZF2 Missense_Mutation p.P400S 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MT-06 2 215802328 215802328 C T ABCA12 Missense_Mutation p.G2483E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 2 219297644 219297644 C T VIL1 Silent p.S490S 0.40 TCGA-EE-A2MT-06 2 219757713 219757713 C T WNT10A Missense_Mutation p.P325L 0.55 tolerated(0.38) benign(0.058) TCGA-EE-A2MT-06 2 219920510 219920510 C T IHH Missense_Mutation p.A219T 0.55 tolerated(0.77) benign(0.022) TCGA-EE-A2MT-06 2 220349257 220349257 G A SPEG Missense_Mutation p.E2358K 0.50 probably_damaging(0.991) TCGA-EE-A2MT-06 2 220431775 220431775 G A OBSL1 Silent p.L637L 0.47 TCGA-EE-A2MT-06 2 228012248 228012248 C T COL4A4 5'UTR 0.43 TCGA-EE-A2MT-06 2 228228526 228228526 C T TM4SF20 Missense_Mutation p.E202K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 2 228476360 228476360 G A C2orf83 Missense_Mutation p.S68F 0.49 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-EE-A2MT-06 2 234198983 234198983 C T ATG16L1 Missense_Mutation p.R472C 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 2 234581115 234581115 G A UGT1A9 Missense_Mutation p.E179K 0.41 tolerated(1) benign(0.232) TCGA-EE-A2MT-06 2 234590615 234590615 C T UGT1A7 Missense_Mutation p.P11L 0.38 tolerated(0.33) benign(0.005) TCGA-EE-A2MT-06 2 234590995 234590995 A C UGT1A7 Missense_Mutation p.K138Q 0.40 tolerated(0.67) benign(0.159) TCGA-EE-A2MT-06 2 237150103 237150103 C T ASB18 Intron 0.35 TCGA-EE-A2MT-06 2 241448827 241448827 G A ANKMY1 Missense_Mutation p.P689S 0.19 tolerated(0.06) possibly_damaging(0.512) TCGA-EE-A2MT-06 2 242080011 242080011 C T PASK Nonsense_Mutation p.W118* 0.35 TCGA-EE-A2MT-06 2 24521542 24521542 C T ITSN2 Missense_Mutation p.E496K 0.40 deleterious(0.01) unknown(0) TCGA-EE-A2MT-06 2 24920556 24920556 C T NCOA1 Silent p.L280L 0.50 TCGA-EE-A2MT-06 2 26667734 26667734 G A DRC1 Nonsense_Mutation p.W438* 0.38 TCGA-EE-A2MT-06 2 27263281 27263281 C T TMEM214 Silent p.F620F 0.47 TCGA-EE-A2MT-06 2 27521478 27521478 C T TRIM54 Missense_Mutation p.S71F 0.30 tolerated(0.75) benign(0.308) TCGA-EE-A2MT-06 2 27726407 27726407 C T GCKR Missense_Mutation p.S224L 0.36 tolerated(0.76) benign(0.064) TCGA-EE-A2MT-06 2 29222116 29222116 G A FAM179A Missense_Mutation p.G70E 0.38 tolerated(0.2) benign(0.038) TCGA-EE-A2MT-06 2 29234362 29234362 C T FAM179A Missense_Mutation p.S291F 0.45 deleterious(0.02) possibly_damaging(0.907) TCGA-EE-A2MT-06 2 29240077 29240077 G A FAM179A Missense_Mutation p.E368K 0.49 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MT-06 2 29451801 29451801 C T ALK Missense_Mutation p.G922R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 2 30959436 30959436 A C CAPN13 Missense_Mutation p.L552R 0.33 deleterious(0) possibly_damaging(0.693) TCGA-EE-A2MT-06 2 31569699 31569699 T C XDH Missense_Mutation p.Q1096R 0.48 deleterious(0.01) benign(0.142) TCGA-EE-A2MT-06 2 33335741 33335741 G A LTBP1 Missense_Mutation p.G319E 0.54 tolerated(0.62) benign(0.017) TCGA-EE-A2MT-06 2 37041367 37041367 G A VIT Missense_Mutation p.E649K 0.47 deleterious(0) benign(0.038) TCGA-EE-A2MT-06 2 37076681 37076681 G A STRN Missense_Mutation p.S754L 0.46 deleterious(0) probably_damaging(0.941) TCGA-EE-A2MT-06 2 48897029 48897029 G A STON1-GTF2A1L Missense_Mutation p.V1087I 0.44 tolerated(0.1) benign(0.077) TCGA-EE-A2MT-06 2 49190986 49190986 C T FSHR Missense_Mutation p.G325E 0.40 tolerated(0.22) benign(0.001) TCGA-EE-A2MT-06 2 50758484 50758484 G A NRXN1 Missense_Mutation p.S783F 0.61 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A2MT-06 2 50779866 50779866 A T NRXN1 Missense_Mutation p.F580I 0.26 deleterious(0) benign(0.426) TCGA-EE-A2MT-06 2 54858274 54858274 C T SPTBN1 Silent p.A1030A 0.35 TCGA-EE-A2MT-06 2 67631180 67631180 T - ETAA1 Frame_Shift_Del p.L456* 0.25 TCGA-EE-A2MT-06 2 70188515 70188515 G A ASPRV1 Silent p.V102V 0.32 TCGA-EE-A2MT-06 2 71908217 71908217 G A DYSF Missense_Mutation p.M2050I 0.28 deleterious(0.01) benign(0.053) TCGA-EE-A2MT-06 2 74154162 74154162 C T DGUOK Missense_Mutation p.S42F 0.45 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MT-06 2 88825156 88825156 G A TEX37 5'UTR 0.42 TCGA-EE-A2MT-06 2 89049514 89049514 C T RPIA Silent p.G285G 0.39 TCGA-EE-A2MT-06 2 89049515 89049515 C T RPIA Silent p.L286L 0.38 TCGA-EE-A2MT-06 2 89976397 89976397 A T IGKV2D-30 Missense_Mutation p.S90C 0.38 deleterious(0) probably_damaging(0.949) TCGA-EE-A2MT-06 2 96956442 96956442 C T SNRNP200 Missense_Mutation p.G845R 0.44 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MT-06 3 101058952 101058952 C G SENP7 Missense_Mutation p.D782H 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 3 101284882 101284882 C T TRMT10C 3'UTR 0.53 TCGA-EE-A2MT-06 3 10146260 10146260 C T FANCD2OS Missense_Mutation p.G67R 0.44 tolerated(0.22) possibly_damaging(0.906) TCGA-EE-A2MT-06 3 107885814 107885814 G A IFT57 Missense_Mutation p.H290Y 0.37 tolerated(0.12) benign(0.027) TCGA-EE-A2MT-06 3 108549601 108549601 C T TRAT1 Missense_Mutation p.S31F 0.42 tolerated(0.05) benign(0.226) TCGA-EE-A2MT-06 3 108568015 108568015 C T TRAT1 Missense_Mutation p.P73S 0.57 tolerated(0.07) benign(0.2) TCGA-EE-A2MT-06 3 108690227 108690227 G A MORC1 Missense_Mutation p.P834S 0.34 deleterious(0.01) benign(0.098) TCGA-EE-A2MT-06 3 108818307 108818307 G A MORC1 Silent p.S107S 0.47 TCGA-EE-A2MT-06 3 109026920 109026920 G A DPPA2 Missense_Mutation p.S206F 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-EE-A2MT-06 3 11059584 11059584 C T SLC6A1 Silent p.F98F 0.37 TCGA-EE-A2MT-06 3 111312559 111312559 C T ZBED2 Missense_Mutation p.E164K 0.33 deleterious(0.01) benign(0.151) TCGA-EE-A2MT-06 3 111312560 111312560 C T ZBED2 Silent p.R163R 0.34 TCGA-EE-A2MT-06 3 11300881 11300881 G A HRH1 Missense_Mutation p.R53Q 0.19 deleterious(0.02) benign(0.382) TCGA-EE-A2MT-06 3 11300882 11300882 G A HRH1 Silent p.R53R 0.22 TCGA-EE-A2MT-06 3 113285282 113285282 G A SIDT1 Missense_Mutation p.V80M 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MT-06 3 114014634 114014634 G A TIGIT Missense_Mutation p.D102N 0.30 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MT-06 3 120121692 120121692 G A FSTL1 Silent p.A256A 0.34 TCGA-EE-A2MT-06 3 121207613 121207613 G A POLQ Missense_Mutation p.H1389Y 0.39 tolerated(0.61) benign(0.192) TCGA-EE-A2MT-06 3 121289622 121289622 C T ARGFX Missense_Mutation p.S21F 0.49 tolerated(0.71) benign(0.001) TCGA-EE-A2MT-06 3 121416987 121416987 G A GOLGB1 Missense_Mutation p.H795Y 0.51 benign(0.417) TCGA-EE-A2MT-06 3 121707144 121707144 G A ILDR1 3'UTR 0.48 TCGA-EE-A2MT-06 3 123634533 123634533 G A CCDC14 Missense_Mutation p.S611F 0.35 deleterious(0) benign(0.227) TCGA-EE-A2MT-06 3 124627080 124627080 G A MUC13 Missense_Mutation p.P484S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 3 12660032 12660032 C T RAF1 Silent p.P63P 0.34 TCGA-EE-A2MT-06 3 12859147 12859147 G A CAND2 Missense_Mutation p.A906T 0.45 tolerated(0.42) benign(0.013) TCGA-EE-A2MT-06 3 129116185 129116185 G A EFCAB12 3'Flank 0.37 TCGA-EE-A2MT-06 3 129284830 129284830 C T PLXND1 Missense_Mutation p.E1408K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 3 136573300 136573300 G A SLC35G2 5'UTR 0.35 TCGA-EE-A2MT-06 3 1414564 1414564 C T CNTN6 Missense_Mutation p.H571Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 3 142403096 142403096 T G PLS1 Silent p.A249A 0.08 TCGA-EE-A2MT-06 3 150690456 150690456 C T CLRN1 Missense_Mutation p.G14R 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 3 151599155 151599155 C T SUCNR1 Missense_Mutation p.S275F 0.45 tolerated(0.06) benign(0.078) TCGA-EE-A2MT-06 3 153840535 153840535 C T ARHGEF26 Missense_Mutation p.P252S 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 3 161221358 161221358 T C OTOL1 Silent p.P354P 0.53 TCGA-EE-A2MT-06 3 169540495 169540495 C T LRRIQ4 Silent p.I262I 0.40 TCGA-EE-A2MT-06 3 183381313 183381313 C T KLHL24 Missense_Mutation p.P330S 0.38 tolerated(0.29) probably_damaging(0.951) TCGA-EE-A2MT-06 3 185234907 185234907 A T LIPH Missense_Mutation p.D310E 0.38 tolerated(0.68) benign(0.013) TCGA-EE-A2MT-06 3 186390584 186390584 G A HRG Silent p.G189G 0.50 TCGA-EE-A2MT-06 3 192973511 192973511 C T HRASLS Silent p.F129F 0.47 TCGA-EE-A2MT-06 3 194170952 194170952 G A ATP13A3 Missense_Mutation p.P298S 0.20 tolerated(0.07) probably_damaging(0.995) TCGA-EE-A2MT-06 3 194790788 194790788 G A XXYLT1 Missense_Mutation p.P280S 0.42 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MT-06 3 26751121 26751121 G A LRRC3B 5'UTR 0.44 TCGA-EE-A2MT-06 3 32207443 32207443 G A GPD1L 3'UTR 0.44 TCGA-EE-A2MT-06 3 38181467 38181467 C T MYD88 Silent p.I160I 0.42 TCGA-EE-A2MT-06 3 39162558 39162558 C G TTC21A Missense_Mutation p.S332W 0.44 deleterious(0) possibly_damaging(0.858) TCGA-EE-A2MT-06 3 42234641 42234641 G A TRAK1 Missense_Mutation p.E282K 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MT-06 3 49005998 49005998 C T ARIH2 Silent p.L190L 0.38 TCGA-EE-A2MT-06 3 49155249 49155249 G A USP19 Missense_Mutation p.P105S 0.25 tolerated_low_confidence(0.8) benign(0) TCGA-EE-A2MT-06 3 49449940 49449940 G A TCTA Silent p.R27R 0.29 TCGA-EE-A2MT-06 3 50330008 50330008 C T IFRD2 5'Flank 0.53 TCGA-EE-A2MT-06 3 56330433 56330433 C A ERC2 Missense_Mutation p.D230Y 0.35 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MT-06 3 57543412 57543412 C T PDE12 Nonsense_Mutation p.Q436* 0.48 TCGA-EE-A2MT-06 3 58109178 58109178 G A FLNB Missense_Mutation p.G1162E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 3 58486826 58486826 G A KCTD6 Missense_Mutation p.D61N 0.35 tolerated(0.32) probably_damaging(0.967) TCGA-EE-A2MT-06 3 62177286 62177286 G A PTPRG Missense_Mutation p.E393K 0.44 tolerated(0.19) benign(0.228) TCGA-EE-A2MT-06 3 64619277 64619277 C T ADAMTS9 Missense_Mutation p.M682I 0.42 tolerated(0.22) benign(0.002) TCGA-EE-A2MT-06 3 70014436 70014436 C T MITF 3'UTR 0.28 TCGA-EE-A2MT-06 3 72799687 72799687 G A SHQ1 Silent p.P494P 0.29 TCGA-EE-A2MT-06 3 72799688 72799688 G A SHQ1 Missense_Mutation p.P494L 0.29 deleterious_low_confidence(0.01) benign(0.018) TCGA-EE-A2MT-06 3 79639029 79639029 C T ROBO1 Missense_Mutation p.M11I 0.43 tolerated_low_confidence(1) benign(0) TCGA-EE-A2MT-06 3 93598050 93598050 G A PROS1 Missense_Mutation p.P534L 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A2MT-06 3 96706498 96706498 C T EPHA6 Missense_Mutation p.R259C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 3 99513517 99513517 G A COL8A1 Missense_Mutation p.G258R 0.36 deleterious(0) unknown(0) TCGA-EE-A2MT-06 4 104579504 104579504 A T TACR3 Missense_Mutation p.I202N 0.56 deleterious(0.01) possibly_damaging(0.74) TCGA-EE-A2MT-06 4 10542157 10542157 G A CLNK Missense_Mutation p.S188F 0.44 tolerated(0.09) benign(0.061) TCGA-EE-A2MT-06 4 106156272 106156272 C T TET2 Silent p.S391S 0.29 TCGA-EE-A2MT-06 4 110909835 110909835 G A EGF Missense_Mutation p.G902S 0.40 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A2MT-06 4 118005895 118005895 C T TRAM1L1 Missense_Mutation p.G219R 0.26 deleterious(0.02) possibly_damaging(0.696) TCGA-EE-A2MT-06 4 119203249 119203249 C T PRSS12 Missense_Mutation p.D824N 0.44 tolerated(0.15) probably_damaging(0.951) TCGA-EE-A2MT-06 4 122854149 122854149 C T TRPC3 Silent p.E88E 0.27 TCGA-EE-A2MT-06 4 126367457 126367457 C T FAT4 Silent p.I2401I 0.52 TCGA-EE-A2MT-06 4 140444586 140444586 G A SETD7 Missense_Mutation p.S189L 0.39 tolerated(0.11) benign(0.004) TCGA-EE-A2MT-06 4 141315179 141315179 C T CLGN Missense_Mutation p.R389Q 0.39 tolerated(0.1) benign(0.266) TCGA-EE-A2MT-06 4 151153563 151153563 G A DCLK2 Silent p.E475E 0.44 TCGA-EE-A2MT-06 4 151203626 151203626 C T LRBA Silent p.T2775T 0.39 TCGA-EE-A2MT-06 4 152069112 152069112 G A SH3D19 Missense_Mutation p.R402C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 4 153549549 153549549 G A TMEM154 3'UTR 0.46 TCGA-EE-A2MT-06 4 153750825 153750825 C T ARFIP1 Missense_Mutation p.P14S 0.35 tolerated_low_confidence(0.28) benign(0.052) TCGA-EE-A2MT-06 4 154197099 154197099 C T TRIM2 Silent p.C90C 0.43 TCGA-EE-A2MT-06 4 154197100 154197100 C T TRIM2 Missense_Mutation p.R91C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 4 157693952 157693952 C T PDGFC Missense_Mutation p.E197K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A2MT-06 4 159514616 159514616 C T RXFP1 Missense_Mutation p.S84F 0.34 tolerated(0.14) benign(0.003) TCGA-EE-A2MT-06 4 164393635 164393635 C T TKTL2 Missense_Mutation p.G418S 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A2MT-06 4 16504574 16504574 C T LDB2 Intron 0.29 TCGA-EE-A2MT-06 4 169362542 169362542 G A DDX60L Missense_Mutation p.P414S 0.32 tolerated(0.07) probably_damaging(0.964) TCGA-EE-A2MT-06 4 170315614 170315614 A T NEK1 3'UTR 0.46 TCGA-EE-A2MT-06 4 187455560 187455560 G A MTNR1A Silent p.I112I 0.57 TCGA-EE-A2MT-06 4 20852170 20852170 T C KCNIP4 Missense_Mutation p.K95R 0.40 deleterious(0.01) benign(0.131) TCGA-EE-A2MT-06 4 2306992 2306992 A T ZFYVE28 Missense_Mutation p.L359M 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A2MT-06 4 2691333 2691333 C T FAM193A Missense_Mutation p.P520L 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MT-06 4 38051340 38051340 C T TBC1D1 Silent p.L577L 0.46 TCGA-EE-A2MT-06 4 39846297 39846297 G A PDS5A Missense_Mutation p.P1176L 0.36 tolerated(0.25) benign(0.002) TCGA-EE-A2MT-06 4 42627695 42627695 C T ATP8A1 Missense_Mutation p.R67K 0.57 tolerated(0.93) probably_damaging(0.952) TCGA-EE-A2MT-06 4 46979578 46979578 C T GABRA4 Missense_Mutation p.E115K 0.43 tolerated(0.35) possibly_damaging(0.73) TCGA-EE-A2MT-06 4 47548915 47548915 C T ATP10D Intron 0.44 TCGA-EE-A2MT-06 4 55595626 55595626 C T KIT Missense_Mutation p.L706F 0.42 tolerated(0.07) probably_damaging(0.969) TCGA-EE-A2MT-06 4 6302829 6302829 C T WFS1 Missense_Mutation p.T436I 0.38 deleterious(0) benign(0.002) TCGA-EE-A2MT-06 4 651211 651211 C T PDE6B Silent p.N443N 0.32 TCGA-EE-A2MT-06 4 70146659 70146659 C T UGT2B28 Silent p.I147I 0.32 TCGA-EE-A2MT-06 4 72429552 72429552 C T SLC4A4 Intron 0.47 TCGA-EE-A2MT-06 4 72629585 72629585 C T GC Missense_Mutation p.S200N 0.30 tolerated(0.38) benign(0.001) TCGA-EE-A2MT-06 4 74274439 74274439 C T ALB Silent p.N133N 0.46 TCGA-EE-A2MT-06 4 79328974 79328974 G A FRAS1 Silent p.Q1429Q 0.45 TCGA-EE-A2MT-06 4 8229467 8229467 G A SH3TC1 Silent p.E682E 0.63 TCGA-EE-A2MT-06 4 83552506 83552506 C T SCD5 Missense_Mutation p.A323T 0.56 tolerated(0.29) benign(0.009) TCGA-EE-A2MT-06 4 86950413 86950413 C T MAPK10 Missense_Mutation p.E397K 0.51 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A2MT-06 4 88106875 88106875 G A KLHL8 Missense_Mutation p.S98F 0.25 deleterious(0.05) probably_damaging(0.98) TCGA-EE-A2MT-06 4 89421091 89421091 T A HERC5 Missense_Mutation p.L820H 0.42 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MT-06 4 94006221 94006221 C T GRID2 Missense_Mutation p.S107F 0.33 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MT-06 4 9784300 9784300 A G DRD5 Missense_Mutation p.N216S 0.35 tolerated(0.56) benign(0.091) TCGA-EE-A2MT-06 5 10461461 10461461 A G ROPN1L Missense_Mutation p.K195E 0.44 tolerated(0.83) benign(0.023) TCGA-EE-A2MT-06 5 11565168 11565168 C T CTNND2 Missense_Mutation p.E59K 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 5 118454697 118454697 G A DMXL1 Missense_Mutation p.E311K 0.32 tolerated(0.32) benign(0.002) TCGA-EE-A2MT-06 5 129015583 129015583 A T ADAMTS19 Missense_Mutation p.K872I 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MT-06 5 137485414 137485414 G A BRD8 Missense_Mutation p.P1065S 0.20 tolerated(0.16) benign(0) TCGA-EE-A2MT-06 5 13753569 13753569 C T DNAH5 Missense_Mutation p.E3549K 0.39 possibly_damaging(0.621) TCGA-EE-A2MT-06 5 13766106 13766106 C T DNAH5 Silent p.G3360G 0.39 TCGA-EE-A2MT-06 5 13820501 13820501 C T DNAH5 Silent p.G2265G 0.33 TCGA-EE-A2MT-06 5 13864608 13864608 C T DNAH5 Silent p.R1498R 0.33 TCGA-EE-A2MT-06 5 140078184 140078184 C T HARS2 3'UTR 0.38 TCGA-EE-A2MT-06 5 140530769 140530769 C T PCDHB6 Nonsense_Mutation p.Q311* 0.40 TCGA-EE-A2MT-06 5 140558309 140558309 G A PCDHB8 Missense_Mutation p.E232K 0.45 tolerated_low_confidence(0.59) benign(0.005) TCGA-EE-A2MT-06 5 140594521 140594521 G A PCDHB13 Missense_Mutation p.G276R 0.36 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-EE-A2MT-06 5 140625546 140625546 C T PCDHB15 Missense_Mutation p.P134S 0.41 tolerated_low_confidence(0.35) benign(0.001) TCGA-EE-A2MT-06 5 140730565 140730565 T A PCDHGB1 Silent p.V246V 0.43 TCGA-EE-A2MT-06 5 140763816 140763816 C T PCDHGA7 Silent p.P450P 0.29 TCGA-EE-A2MT-06 5 140783321 140783321 G A PCDHGA9 Missense_Mutation p.D268N 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A2MT-06 5 140801793 140801793 G A PCDHGA11 Silent p.T333T 0.41 TCGA-EE-A2MT-06 5 145435702 145435702 C T SH3RF2 Missense_Mutation p.P494L 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 5 145643114 145643114 C T RBM27 Missense_Mutation p.R751C 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MT-06 5 147480127 147480127 C T SPINK5 Silent p.S401S 0.54 TCGA-EE-A2MT-06 5 149500874 149500874 T C PDGFRB Missense_Mutation p.T786A 0.34 tolerated(0.44) benign(0.07) TCGA-EE-A2MT-06 5 150946913 150946913 C T FAT2 Missense_Mutation p.R527K 0.44 probably_damaging(0.999) TCGA-EE-A2MT-06 5 153432802 153432802 C T MFAP3 Silent p.I206I 0.37 TCGA-EE-A2MT-06 5 154275824 154275824 G A GEMIN5 Missense_Mutation p.S1142F 0.32 tolerated(0.21) benign(0.005) TCGA-EE-A2MT-06 5 154393348 154393348 G A KIF4B 5'UTR 0.48 TCGA-EE-A2MT-06 5 156456640 156456640 G A HAVCR1 3'UTR 0.41 TCGA-EE-A2MT-06 5 162902636 162902636 C T HMMR Missense_Mutation p.S409F 0.32 deleterious(0.04) benign(0.033) TCGA-EE-A2MT-06 5 170148826 170148826 C T KCNIP1 Intron 0.39 TCGA-EE-A2MT-06 5 170235729 170235729 G A GABRP Missense_Mutation p.D269N 0.45 deleterious(0.01) benign(0.42) TCGA-EE-A2MT-06 5 170725792 170725792 G A RANBP17 Missense_Mutation p.R1066K 0.46 tolerated(0.17) benign(0.112) TCGA-EE-A2MT-06 5 178419000 178419000 C T GRM6 Missense_Mutation p.D197N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 5 178580539 178580539 C T ADAMTS2 Missense_Mutation p.E490K 0.24 deleterious(0) possibly_damaging(0.89) TCGA-EE-A2MT-06 5 178770912 178770912 G A ADAMTS2 Silent p.L130L 0.52 TCGA-EE-A2MT-06 5 179977018 179977018 C T CNOT6 Missense_Mutation p.P67L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 5 180166711 180166711 C T OR2Y1 Silent p.V116V 0.55 TCGA-EE-A2MT-06 5 23522840 23522840 C T PRDM9 Missense_Mutation p.P243L 0.35 deleterious(0) possibly_damaging(0.584) TCGA-EE-A2MT-06 5 256538 256538 A T SDHA 3'UTR 0.53 TCGA-EE-A2MT-06 5 31302310 31302310 G A CDH6 Missense_Mutation p.E302K 0.56 tolerated(0.14) benign(0.005) TCGA-EE-A2MT-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.38 tolerated(0.31) possibly_damaging(0.72) TCGA-EE-A2MT-06 5 31410872 31410872 G A DROSHA Silent p.T1216T 0.40 TCGA-EE-A2MT-06 5 33576424 33576424 A G ADAMTS12 Missense_Mutation p.V1236A 0.44 tolerated(1) benign(0) TCGA-EE-A2MT-06 5 35066046 35066046 C T PRLR Missense_Mutation p.M338I 0.39 tolerated(0.29) benign(0.003) TCGA-EE-A2MT-06 5 41010070 41010070 C T MROH2B Missense_Mutation p.D1083N 0.41 tolerated(0.22) benign(0.003) TCGA-EE-A2MT-06 5 41161948 41161948 C T C6 Silent p.Q435Q 0.53 TCGA-EE-A2MT-06 5 41195973 41195973 C T C6 Missense_Mutation p.E170K 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 5 5237115 5237115 A T ADAMTS16 Missense_Mutation p.E686V 0.39 deleterious(0.02) possibly_damaging(0.882) TCGA-EE-A2MT-06 5 55185847 55185847 A G IL31RA Missense_Mutation p.N219S 0.47 deleterious(0.02) benign(0.025) TCGA-EE-A2MT-06 5 64468685 64468685 G A ADAMTS6 Missense_Mutation p.R1021C 0.41 deleterious(0) possibly_damaging(0.899) TCGA-EE-A2MT-06 5 79030995 79030995 C T CMYA5 Missense_Mutation p.S2136F 0.49 benign(0.276) TCGA-EE-A2MT-06 5 82816938 82816938 C T VCAN Missense_Mutation p.S938F 0.32 tolerated(0.16) benign(0.055) TCGA-EE-A2MT-06 5 82837907 82837907 T A VCAN Missense_Mutation p.S3029T 0.44 tolerated(0.57) benign(0.007) TCGA-EE-A2MT-06 5 89938520 89938520 G A GPR98 Missense_Mutation p.D770N 0.37 possibly_damaging(0.811) TCGA-EE-A2MT-06 5 89979669 89979669 G A GPR98 Silent p.G1977G 0.41 TCGA-EE-A2MT-06 5 90024619 90024619 C T GPR98 Missense_Mutation p.S3432F 0.50 benign(0.051) TCGA-EE-A2MT-06 5 94918713 94918713 C T ARSK Silent p.V170V 0.37 TCGA-EE-A2MT-06 6 100841684 100841684 G A SIM1 Missense_Mutation p.P417S 0.73 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A2MT-06 6 101075584 101075584 C T ASCC3 Missense_Mutation p.M1508I 0.70 tolerated(0.16) benign(0.01) TCGA-EE-A2MT-06 6 106973044 106973044 C G AIM1 Missense_Mutation p.R1020G 0.78 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 6 107955660 107955660 C T SOBP Missense_Mutation p.P538S 0.80 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A2MT-06 6 121768817 121768817 C T GJA1 Missense_Mutation p.T275I 0.65 tolerated(0.24) benign(0.042) TCGA-EE-A2MT-06 6 123318986 123318986 G A CLVS2 Missense_Mutation p.E22K 0.75 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MT-06 6 129371128 129371128 G A LAMA2 Missense_Mutation p.E60K 0.71 deleterious(0.01) benign(0.41) TCGA-EE-A2MT-06 6 129714402 129714402 T A LAMA2 Splice_Site p.X1815_splice 0.72 TCGA-EE-A2MT-06 6 130152480 130152480 G A TMEM244 Missense_Mutation p.S124L 0.81 tolerated(0.46) benign(0) TCGA-EE-A2MT-06 6 144801043 144801043 C T UTRN Silent p.A1144A 0.62 TCGA-EE-A2MT-06 6 158497676 158497676 G A SYNJ2 Missense_Mutation p.E771K 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 6 160328869 160328869 C T MAS1 Silent p.S294S 0.73 TCGA-EE-A2MT-06 6 22287582 22287582 G A PRL 3'UTR 0.89 TCGA-EE-A2MT-06 6 24563739 24563739 C T KIAA0319 Silent p.R813R 0.96 TCGA-EE-A2MT-06 6 28228056 28228056 G A NKAPL Missense_Mutation p.G303S 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 6 28253470 28253470 C T PGBD1 Missense_Mutation p.P180L 0.79 tolerated_low_confidence(0.7) benign(0.002) TCGA-EE-A2MT-06 6 28269230 28269230 C T PGBD1 Silent p.F533F 0.85 TCGA-EE-A2MT-06 6 29912168 29912168 A C HLA-A Silent p.R297R 0.39 TCGA-EE-A2MT-06 6 31594906 31594906 C T PRRC2A Silent p.A407A 0.74 TCGA-EE-A2MT-06 6 31623783 31623783 G A APOM Missense_Mutation p.G14S 0.82 tolerated(0.09) benign(0.234) TCGA-EE-A2MT-06 6 31918410 31918410 G A CFB Missense_Mutation p.D1049N 0.85 tolerated(0.17) benign(0.001) TCGA-EE-A2MT-06 6 43412968 43412968 C T ABCC10 Silent p.T982T 0.54 TCGA-EE-A2MT-06 6 43752396 43752396 C T VEGFA 3'Flank 0.23 TCGA-EE-A2MT-06 6 44116100 44116100 C T TMEM63B Missense_Mutation p.H367Y 0.58 deleterious(0) possibly_damaging(0.585) TCGA-EE-A2MT-06 6 44397582 44397582 C T CDC5L Missense_Mutation p.R676C 0.27 deleterious(0) probably_damaging(0.985) TCGA-EE-A2MT-06 6 46107692 46107692 G A ENPP4 Silent p.Q124Q 0.29 TCGA-EE-A2MT-06 6 46801057 46801057 G A MEP1A Missense_Mutation p.G464E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 6 50011502 50011502 C T DEFB112 Missense_Mutation p.G43E 0.51 tolerated(1) probably_damaging(0.931) TCGA-EE-A2MT-06 6 51890262 51890262 C T PKHD1 Missense_Mutation p.G1449D 0.33 tolerated(0.23) benign(0.042) TCGA-EE-A2MT-06 6 52101880 52101880 T C IL17F Missense_Mutation p.E114G 0.31 deleterious(0.01) possibly_damaging(0.89) TCGA-EE-A2MT-06 6 52134018 52134018 G A MCM3 Missense_Mutation p.P657S 0.66 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MT-06 6 52143544 52143544 G A MCM3 Missense_Mutation p.S337F 0.49 deleterious(0.01) possibly_damaging(0.492) TCGA-EE-A2MT-06 6 55145171 55145171 G A HCRTR2 Nonsense_Mutation p.W345* 0.20 TCGA-EE-A2MT-06 6 55933915 55933915 C T COL21A1 Missense_Mutation p.G674R 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 6 56033065 56033065 G A COL21A1 Missense_Mutation p.R353C 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MT-06 6 63995556 63995556 C T LGSN Missense_Mutation p.R89Q 0.03 deleterious(0.04) possibly_damaging(0.684) TCGA-EE-A2MT-06 6 70049224 70049224 G A BAI3 Splice_Site p.X1096_splice 0.77 TCGA-EE-A2MT-06 6 7229427 7229427 C T RREB1 Silent p.A365A 0.79 TCGA-EE-A2MT-06 6 73904938 73904938 C T KCNQ5 Missense_Mutation p.S886F 0.69 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-EE-A2MT-06 6 84303409 84303409 A G SNAP91 Missense_Mutation p.L495P 0.79 deleterious(0) possibly_damaging(0.766) TCGA-EE-A2MT-06 6 90604507 90604507 G A GJA10 Missense_Mutation p.R107K 0.75 tolerated(0.2) benign(0.4) TCGA-EE-A2MT-06 6 99851718 99851718 G A PNISR Silent p.S381S 0.79 TCGA-EE-A2MT-06 6 99851719 99851719 G A PNISR Missense_Mutation p.S381F 0.83 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MT-06 7 100551575 100551575 G A MUC3A Missense_Mutation p.R109K 0.33 tolerated(0.92) benign(0.307) TCGA-EE-A2MT-06 7 100552243 100552243 C T MUC3A Missense_Mutation p.P332S 0.17 tolerated(0.33) possibly_damaging(0.463) TCGA-EE-A2MT-06 7 117358151 117358151 A G CTTNBP2 Missense_Mutation p.L1556S 0.44 deleterious(0) possibly_damaging(0.824) TCGA-EE-A2MT-06 7 126249504 126249504 C T GRM8 Missense_Mutation p.G469E 0.47 deleterious(0) probably_damaging(0.97) TCGA-EE-A2MT-06 7 127255335 127255335 G A PAX4 Intron 0.53 TCGA-EE-A2MT-06 7 12728093 12728093 C T ARL4A Missense_Mutation p.H72Y 0.27 tolerated(1) benign(0.027) TCGA-EE-A2MT-06 7 127344916 127344916 C T SND1 Silent p.L288L 0.45 TCGA-EE-A2MT-06 7 128315775 128315775 C T FAM71F2 Missense_Mutation p.T76I 0.50 deleterious(0.04) possibly_damaging(0.839) TCGA-EE-A2MT-06 7 128597294 128597294 G C TNPO3 3'UTR 0.33 TCGA-EE-A2MT-06 7 129847778 129847778 G A SSMEM1 Missense_Mutation p.E10K 0.51 deleterious(0.05) possibly_damaging(0.486) TCGA-EE-A2MT-06 7 129945666 129945666 G A CPA4 Missense_Mutation p.G166E 0.50 deleterious(0.02) possibly_damaging(0.541) TCGA-EE-A2MT-06 7 13971334 13971334 G A ETV1 Missense_Mutation p.P199S 0.30 tolerated(0.5) benign(0.034) TCGA-EE-A2MT-06 7 141420806 141420806 C T WEE2 Missense_Mutation p.S277F 0.34 deleterious(0) possibly_damaging(0.859) TCGA-EE-A2MT-06 7 141619380 141619380 G A OR9A4 Silent p.R235R 0.44 TCGA-EE-A2MT-06 7 141732641 141732641 C T MGAM Missense_Mutation p.S534F 0.25 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MT-06 7 142021250 142021250 G A TRBV5-1 Missense_Mutation p.G77E 0.38 deleterious(0.04) possibly_damaging(0.654) TCGA-EE-A2MT-06 7 142481855 142481855 G A PRSS3P2 RNA 0.42 TCGA-EE-A2MT-06 7 142655421 142655421 C T KEL Silent p.G165G 0.27 TCGA-EE-A2MT-06 7 142655437 142655438 - CAAGTGTAT KEL In_Frame_Ins p.D157_L159dup 0.13 TCGA-EE-A2MT-06 7 142723947 142723947 C T OR9A2 Silent p.Q91Q 0.44 TCGA-EE-A2MT-06 7 147674960 147674960 G A CNTNAP2 Silent p.K754K 0.32 TCGA-EE-A2MT-06 7 148768906 148768906 G A ZNF786 Missense_Mutation p.R320W 0.38 tolerated(0.19) benign(0) TCGA-EE-A2MT-06 7 149516521 149516521 C T SSPO RNA 0.28 TCGA-EE-A2MT-06 7 150217656 150217656 G A GIMAP7 Silent p.G198G 0.31 TCGA-EE-A2MT-06 7 150217657 150217657 G A GIMAP7 Missense_Mutation p.A199T 0.31 tolerated(0.28) benign(0.05) TCGA-EE-A2MT-06 7 150699372 150699372 G A NOS3 Missense_Mutation p.D578N 0.40 deleterious(0.03) probably_damaging(0.975) TCGA-EE-A2MT-06 7 1542572 1542572 G A INTS1 Missense_Mutation p.P105L 0.44 deleterious(0.02) possibly_damaging(0.468) TCGA-EE-A2MT-06 7 1607429 1607429 T G PSMG3 Missense_Mutation p.N92H 0.50 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A2MT-06 7 16505263 16505263 G A SOSTDC1 Missense_Mutation p.L11F 0.42 tolerated(0.32) benign(0.001) TCGA-EE-A2MT-06 7 18975549 18975549 C T HDAC9 Missense_Mutation p.A974V 0.43 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A2MT-06 7 20193832 20193832 C T MACC1 Missense_Mutation p.G777E 0.40 deleterious(0) probably_damaging(0.952) TCGA-EE-A2MT-06 7 20698790 20698790 C T ABCB5 Intron 0.44 TCGA-EE-A2MT-06 7 29980343 29980343 G A SCRN1 Missense_Mutation p.H252Y 0.42 tolerated(0.1) possibly_damaging(0.745) TCGA-EE-A2MT-06 7 38785191 38785191 C T VPS41 Missense_Mutation p.R650K 0.39 tolerated(0.24) benign(0.097) TCGA-EE-A2MT-06 7 39504141 39504141 G A POU6F2 Silent p.L644L 0.32 TCGA-EE-A2MT-06 7 4107559 4107559 A G SDK1 Missense_Mutation p.I1001V 0.24 tolerated(0.2) benign(0.01) TCGA-EE-A2MT-06 7 4153058 4153058 G A SDK1 Missense_Mutation p.R1191Q 0.39 tolerated(0.32) benign(0.237) TCGA-EE-A2MT-06 7 4153059 4153059 G A SDK1 Silent p.R1191R 0.39 TCGA-EE-A2MT-06 7 4277376 4277376 C T SDK1 Silent p.V2030V 0.38 TCGA-EE-A2MT-06 7 44747488 44747488 C T OGDH Missense_Mutation p.R988W 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A2MT-06 7 45113982 45113982 G A CCM2 Silent p.G364G 0.32 TCGA-EE-A2MT-06 7 47917094 47917094 C T PKD1L1 Missense_Mutation p.G1219E 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 7 4874663 4874663 C T RADIL Missense_Mutation p.E331K 0.36 tolerated(0.58) benign(0.007) TCGA-EE-A2MT-06 7 5545151 5545151 G A FBXL18 Silent p.V43V 0.47 TCGA-EE-A2MT-06 7 5662457 5662457 G A RNF216 3'UTR 0.34 TCGA-EE-A2MT-06 7 5949727 5949727 C T CCZ1 Missense_Mutation p.P254S 0.38 deleterious(0.05) probably_damaging(0.919) TCGA-EE-A2MT-06 7 63726696 63726696 A G ZNF679 Missense_Mutation p.K229E 0.35 tolerated(0.26) benign(0.183) TCGA-EE-A2MT-06 7 64167242 64167242 C T ZNF107 Missense_Mutation p.P187L 0.34 tolerated(0.05) benign(0.026) TCGA-EE-A2MT-06 7 65419115 65419115 C T VKORC1L1 Missense_Mutation p.S120L 0.47 deleterious(0) probably_damaging(0.986) TCGA-EE-A2MT-06 7 72892500 72892500 G A BAZ1B Missense_Mutation p.P431S 0.38 tolerated(0.12) benign(0.343) TCGA-EE-A2MT-06 7 73009996 73009996 G A MLXIPL Missense_Mutation p.R761C 0.34 tolerated(0.06) benign(0.242) TCGA-EE-A2MT-06 7 75583414 75583414 C T POR Missense_Mutation p.S35L 0.40 tolerated(0.42) benign(0.102) TCGA-EE-A2MT-06 7 76797119 76797119 C T CCDC146 Missense_Mutation p.P45L 0.10 deleterious(0.03) benign(0.191) TCGA-EE-A2MT-06 7 82585618 82585618 C T PCLO Missense_Mutation p.E1551K 0.37 unknown(0) TCGA-EE-A2MT-06 7 86468384 86468384 G A GRM3 Missense_Mutation p.M518I 0.37 tolerated(0.73) benign(0.004) TCGA-EE-A2MT-06 7 87476383 87476383 G A SLC25A40 Missense_Mutation p.S171F 0.35 deleterious(0) probably_damaging(0.926) TCGA-EE-A2MT-06 7 90613509 90613509 T C CDK14 Missense_Mutation p.F314L 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A2MT-06 7 91714235 91714235 C T AKAP9 Missense_Mutation p.S2938F 0.38 possibly_damaging(0.629) TCGA-EE-A2MT-06 7 92764235 92764235 C T SAMD9L Silent p.R350R 0.43 TCGA-EE-A2MT-06 7 93055567 93055567 G A CALCR 3'UTR 0.47 TCGA-EE-A2MT-06 7 99270254 99270254 C T CYP3A5 Silent p.V89V 0.42 TCGA-EE-A2MT-06 8 104419988 104419988 G A SLC25A32 Missense_Mutation p.P60L 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MT-06 8 105393486 105393486 C T DPYS Silent p.L500L 0.40 TCGA-EE-A2MT-06 8 113314061 113314061 A C CSMD3 Missense_Mutation p.S2801A 0.38 tolerated(1) possibly_damaging(0.584) TCGA-EE-A2MT-06 8 120608182 120608182 T A ENPP2 Nonsense_Mutation p.K345* 0.44 TCGA-EE-A2MT-06 8 124658255 124658255 C T KLHL38 Silent p.R490R 0.35 TCGA-EE-A2MT-06 8 125499402 125499402 A G RNF139 Silent p.A504A 0.33 TCGA-EE-A2MT-06 8 131916288 131916288 C T ADCY8 Silent p.G547G 0.39 TCGA-EE-A2MT-06 8 139701184 139701184 C T COL22A1 Silent p.G946G 0.41 TCGA-EE-A2MT-06 8 141301106 141301106 G A TRAPPC9 Nonsense_Mutation p.R712* 0.38 TCGA-EE-A2MT-06 8 142202455 142202455 G A DENND3 Missense_Mutation p.M1055I 0.32 tolerated(0.25) benign(0.001) TCGA-EE-A2MT-06 8 143922636 143922636 C T GML Missense_Mutation p.S59F 0.42 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MT-06 8 144886272 144886272 A T SCRIB Missense_Mutation p.S1022T 0.48 probably_damaging(0.995) TCGA-EE-A2MT-06 8 144945250 144945250 G A EPPK1 Silent p.I724I 0.30 TCGA-EE-A2MT-06 8 144995304 144995304 G A PLEC Silent p.V3032V 0.37 TCGA-EE-A2MT-06 8 145151615 145151615 C T CYC1 Missense_Mutation p.P247L 0.40 tolerated(0.22) benign(0.17) TCGA-EE-A2MT-06 8 145151983 145151983 C T CYC1 Silent p.F273F 0.33 TCGA-EE-A2MT-06 8 145948623 145948623 C T ZNF251 Missense_Mutation p.G141D 0.31 tolerated(0.44) probably_damaging(0.931) TCGA-EE-A2MT-06 8 17513392 17513392 T C MTUS1 Missense_Mutation p.K1030E 0.42 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MT-06 8 21956054 21956054 C T FAM160B2 Missense_Mutation p.L297F 0.30 deleterious(0) probably_damaging(0.914) TCGA-EE-A2MT-06 8 22470617 22470617 C T CCAR2 Silent p.Y224Y 0.28 TCGA-EE-A2MT-06 8 22470618 22470618 C T CCAR2 Missense_Mutation p.R225W 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A2MT-06 8 24199208 24199208 C T ADAM28 Missense_Mutation p.P590S 0.43 tolerated(0.13) possibly_damaging(0.896) TCGA-EE-A2MT-06 8 24349506 24349506 G A ADAM7 Missense_Mutation p.D483N 0.48 deleterious(0.03) possibly_damaging(0.585) TCGA-EE-A2MT-06 8 26196487 26196487 T C PPP2R2A Missense_Mutation p.F65S 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MT-06 8 27255116 27255116 C T PTK2B Silent p.S5S 0.48 TCGA-EE-A2MT-06 8 27462448 27462448 G A CLU Silent p.F274F 0.42 TCGA-EE-A2MT-06 8 2823345 2823345 G A CSMD1 Missense_Mutation p.R3078C 0.38 possibly_damaging(0.761) TCGA-EE-A2MT-06 8 2836257 2836257 C G CSMD1 Missense_Mutation p.E2815Q 0.78 possibly_damaging(0.841) TCGA-EE-A2MT-06 8 29923642 29923644 AGG GA TMEM66 Frame_Shift_Del p.P285Lfs*77 0.21 TCGA-EE-A2MT-06 8 30701209 30701209 C T TEX15 Silent p.R1775R 0.36 TCGA-EE-A2MT-06 8 30704454 30704454 C T TEX15 Missense_Mutation p.D694N 0.30 tolerated(0.47) benign(0.039) TCGA-EE-A2MT-06 8 3087727 3087727 G A CSMD1 Missense_Mutation p.P1394S 0.20 probably_damaging(0.999) TCGA-EE-A2MT-06 8 38273437 38273437 G A FGFR1 Missense_Mutation p.S633F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MT-06 8 56015094 56015094 G A XKR4 Missense_Mutation p.D16N 0.47 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A2MT-06 8 57228679 57228679 C T SDR16C5 Silent p.G76G 0.44 TCGA-EE-A2MT-06 8 59508133 59508133 A G NSMAF Silent p.Y657Y 0.40 TCGA-EE-A2MT-06 8 66992756 66992756 G A DNAJC5B Missense_Mutation p.E160K 0.36 tolerated(0.13) possibly_damaging(0.501) TCGA-EE-A2MT-06 8 68956771 68956771 C T PREX2 Missense_Mutation p.R297C 0.33 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MT-06 8 70674078 70674078 C A SLCO5A1 Missense_Mutation p.A314S 0.51 deleterious(0.02) probably_damaging(0.967) TCGA-EE-A2MT-06 8 71128914 71128914 G A NCOA2 Missense_Mutation p.P23S 0.44 tolerated(0.62) benign(0.005) TCGA-EE-A2MT-06 8 8185920 8185920 G A SGK223 Missense_Mutation p.P791L 0.50 possibly_damaging(0.84) TCGA-EE-A2MT-06 8 85799935 85799935 G A RALYL Missense_Mutation p.G274E 0.33 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A2MT-06 8 92301455 92301455 G A SLC26A7 Missense_Mutation p.M95I 0.38 deleterious(0.01) possibly_damaging(0.512) TCGA-EE-A2MT-06 8 94929208 94929208 C T PDP1 5'UTR 0.31 TCGA-EE-A2MT-06 9 100071748 100071748 C T CCDC180 Missense_Mutation p.S85F 0.41 tolerated(0.12) benign(0.139) TCGA-EE-A2MT-06 9 100071749 100071749 T A CCDC180 Silent p.S85S 0.42 TCGA-EE-A2MT-06 9 101911657 101911657 T C TGFBR1 3'UTR 0.47 TCGA-EE-A2MT-06 9 101980728 101980728 G A ALG2 Silent p.L247L 0.35 TCGA-EE-A2MT-06 9 101980729 101980729 G A ALG2 Silent p.A246A 0.35 TCGA-EE-A2MT-06 9 104432921 104432921 C T GRIN3A Missense_Mutation p.M591I 0.45 tolerated(0.06) benign(0.103) TCGA-EE-A2MT-06 9 104499750 104499750 G A GRIN3A Missense_Mutation p.S171L 0.36 deleterious(0.02) benign(0.085) TCGA-EE-A2MT-06 9 107331717 107331717 A T OR13C8 Missense_Mutation p.K90I 0.40 deleterious(0) probably_damaging(0.966) TCGA-EE-A2MT-06 9 107380359 107380359 C A OR13C9 Missense_Mutation p.G43C 0.30 deleterious(0.01) possibly_damaging(0.9) TCGA-EE-A2MT-06 9 107380360 107380360 A T OR13C9 Missense_Mutation p.N42K 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MT-06 9 112166832 112166832 C A PTPN3 Nonsense_Mutation p.E617* 0.47 TCGA-EE-A2MT-06 9 116136008 116136008 G C HDHD3 Missense_Mutation p.F209L 0.40 tolerated(0.06) benign(0.315) TCGA-EE-A2MT-06 9 116769719 116769719 G A ZNF618 Missense_Mutation p.V182M 0.45 tolerated_low_confidence(0.05) possibly_damaging(0.504) TCGA-EE-A2MT-06 9 116857352 116857352 C T KIF12 Missense_Mutation p.R219Q 0.34 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A2MT-06 9 117027228 117027228 C T COL27A1 Missense_Mutation p.P1092S 0.41 possibly_damaging(0.876) TCGA-EE-A2MT-06 9 118969759 118969759 G A PAPPA Silent p.L501L 0.45 TCGA-EE-A2MT-06 9 118997703 118997703 C G PAPPA Missense_Mutation p.T840S 0.36 deleterious(0) benign(0.292) TCGA-EE-A2MT-06 9 118997908 118997908 C T PAPPA Silent p.F908F 0.45 TCGA-EE-A2MT-06 9 119903640 119903640 G A ASTN2 Intron 0.30 TCGA-EE-A2MT-06 9 120475197 120475197 G A TLR4 Missense_Mutation p.R264K 0.52 tolerated(1) benign(0.001) TCGA-EE-A2MT-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.87 TCGA-EE-A2MT-06 9 121930329 121930329 C T BRINP1 Missense_Mutation p.S440N 0.27 tolerated(0.26) possibly_damaging(0.827) TCGA-EE-A2MT-06 9 125152476 125152476 G A PTGS1 Splice_Site p.X433_splice 0.46 TCGA-EE-A2MT-06 9 125391365 125391365 G A OR1B1 Silent p.S150S 0.26 TCGA-EE-A2MT-06 9 127298359 127298359 C T NR6A1 Missense_Mutation p.E293K 0.48 tolerated(0.06) probably_damaging(1) TCGA-EE-A2MT-06 9 127952083 127952083 C T PPP6C 5'UTR 0.33 TCGA-EE-A2MT-06 9 131397188 131397188 C T WDR34 Missense_Mutation p.E332K 0.27 deleterious(0.05) benign(0.191) TCGA-EE-A2MT-06 9 132662284 132662284 G A FNBP1 Silent p.L549L 0.40 TCGA-EE-A2MT-06 9 134350076 134350076 C T PRRC2B Missense_Mutation p.P854S 0.62 tolerated(0.31) benign(0.1) TCGA-EE-A2MT-06 9 135275598 135275598 G A TTF1 Missense_Mutation p.S472F 0.39 deleterious(0) probably_damaging(0.949) TCGA-EE-A2MT-06 9 135802642 135802642 G A TSC1 Silent p.T52T 0.53 TCGA-EE-A2MT-06 9 137808221 137808221 C T FCN1 Missense_Mutation p.G64R 0.52 deleterious(0.02) probably_damaging(0.965) TCGA-EE-A2MT-06 9 138557560 138557560 G A LCN9 Missense_Mutation p.G146E 0.42 deleterious(0) probably_damaging(0.993) TCGA-EE-A2MT-06 9 139371911 139371911 C T SEC16A Missense_Mutation p.D53N 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MT-06 9 139616459 139616459 C T FAM69B Silent p.L95L 0.38 TCGA-EE-A2MT-06 9 14750169 14750169 C T FREM1 Missense_Mutation p.G1838D 0.39 deleterious(0.02) benign(0.423) TCGA-EE-A2MT-06 9 32631678 32631678 G A TAF1L Silent p.L1300L 0.43 TCGA-EE-A2MT-06 9 33795602 33795602 G A PRSS3 Intron 0.31 TCGA-EE-A2MT-06 9 69423698 69423698 C T ANKRD20A4 Missense_Mutation p.S665F 0.17 tolerated(0.17) benign(0.006) TCGA-EE-A2MT-06 9 79323695 79323695 G A PRUNE2 Silent p.T1165T 0.40 TCGA-EE-A2MT-06 9 79461488 79461488 C T PRUNE2 Missense_Mutation p.E151K 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MT-06 9 79461489 79461489 C T PRUNE2 Silent p.K150K 0.44 TCGA-EE-A2MT-06 9 79933216 79933216 C T VPS13A Silent p.T1674T 0.28 TCGA-EE-A2MT-06 9 82323515 82323515 C T TLE4 Silent p.S359S 0.33 TCGA-EE-A2MT-06 9 84532565 84532565 G A SPATA31D5P RNA 0.32 TCGA-EE-A2MT-06 9 84610012 84610012 C T SPATA31D1 Missense_Mutation p.P1543S 0.62 deleterious(0.03) benign(0.288) TCGA-EE-A2MT-06 9 85627427 85627427 C T RASEF Splice_Site p.X256_splice 0.41 TCGA-EE-A2MT-06 9 86585198 86585198 G A HNRNPK Missense_Mutation p.R414C 0.49 deleterious(0.03) benign(0.01) TCGA-EE-A2MT-06 9 86585199 86585199 G A HNRNPK Silent p.I413I 0.48 TCGA-EE-A2MT-06 9 90497933 90497933 G A SPATA31E1 Missense_Mutation p.E43K 0.43 tolerated(0.06) possibly_damaging(0.741) TCGA-EE-A2MT-06 9 95600017 95600017 G A ANKRD19P RNA 0.56 TCGA-EE-A2MT-06 X 10085161 10085161 C T WWC3 Intron 0.85 TCGA-EE-A2MT-06 X 106789034 106789034 G A FRMPD3 Missense_Mutation p.R155Q 0.80 deleterious(0.01) benign(0.041) TCGA-EE-A2MT-06 X 12736281 12736281 G A FRMPD4 Silent p.G1112G 0.87 TCGA-EE-A2MT-06 X 131197486 131197486 A G MST4 Missense_Mutation p.E100G 0.86 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MT-06 X 132445398 132445398 G A GPC4 Silent p.S255S 0.79 TCGA-EE-A2MT-06 X 134706944 134706944 G A DDX26B Missense_Mutation p.G498R 0.72 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A2MT-06 X 134706945 134706945 G A DDX26B Missense_Mutation p.G498E 0.76 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A2MT-06 X 135084286 135084286 C T SLC9A6 Silent p.F271F 0.81 TCGA-EE-A2MT-06 X 136113015 136113015 C T GPR101 Silent p.K273K 0.84 TCGA-EE-A2MT-06 X 149013371 149013371 C T MAGEA8 Missense_Mutation p.R109W 0.83 tolerated(0.07) benign(0.006) TCGA-EE-A2MT-06 X 151303953 151303953 G A MAGEA10 Missense_Mutation p.S47F 0.87 tolerated(0.22) probably_damaging(0.99) TCGA-EE-A2MT-06 X 151818907 151818907 G A GABRQ Silent p.L255L 0.88 TCGA-EE-A2MT-06 X 152860031 152860031 G A FAM58A Nonsense_Mutation p.Q133* 0.89 TCGA-EE-A2MT-06 X 153717110 153717110 G A SLC10A3 Missense_Mutation p.T57I 0.84 tolerated_low_confidence(0.09) benign(0.07) TCGA-EE-A2MT-06 X 155231115 155231115 C T IL9R Intron 0.35 TCGA-EE-A2MT-06 X 29959832 29959832 G A IL1RAPL1 Silent p.L374L 0.82 TCGA-EE-A2MT-06 X 30736685 30736685 C T GK Missense_Mutation p.R330C 0.83 deleterious(0.01) possibly_damaging(0.814) TCGA-EE-A2MT-06 X 3239399 3239399 G A MXRA5 Missense_Mutation p.L1443F 0.77 tolerated(0.77) benign(0.004) TCGA-EE-A2MT-06 X 34149531 34149531 C T FAM47A Missense_Mutation p.E289K 0.83 tolerated(0.74) possibly_damaging(0.502) TCGA-EE-A2MT-06 X 45059862 45059862 C T CXorf36 Silent p.K70K 0.81 TCGA-EE-A2MT-06 X 48771762 48771762 G A PIM2 Missense_Mutation p.L228F 0.91 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MT-06 X 48887489 48887489 G A TFE3 3'UTR 0.89 TCGA-EE-A2MT-06 X 72433254 72433254 G A NAP1L2 Nonsense_Mutation p.R359* 0.80 TCGA-EE-A2MT-06 X 72433255 72433255 G A NAP1L2 Silent p.I358I 0.81 TCGA-EE-A2MT-06 X 75649459 75649459 C T MAGEE1 Missense_Mutation p.S379F 0.85 deleterious_low_confidence(0) benign(0.332) TCGA-EE-A2MT-06 X 83129179 83129179 C T CYLC1 Missense_Mutation p.S488F 0.89 deleterious(0) probably_damaging(0.991) TCGA-EE-A2MT-06 X 99920558 99920558 G A SRPX2 Missense_Mutation p.G229S 0.86 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A2MU-06 10 100148244 100148244 G A PYROXD2 Silent p.I438I 0.25 TCGA-EE-A2MU-06 10 102262191 102262191 C T SEC31B Silent p.L410L 0.11 TCGA-EE-A2MU-06 10 102740344 102740344 G A SEMA4G Nonsense_Mutation p.W454* 0.14 TCGA-EE-A2MU-06 10 104156228 104156228 C T NFKB2 Silent p.I42I 0.13 TCGA-EE-A2MU-06 10 112361499 112361499 C T SMC3 Missense_Mutation p.H917Y 0.10 deleterious(0.01) benign(0.365) TCGA-EE-A2MU-06 10 115335736 115335736 C T HABP2 Missense_Mutation p.P102S 0.17 tolerated(0.05) possibly_damaging(0.517) TCGA-EE-A2MU-06 10 115348699 115348699 C T NRAP 3'UTR 0.19 TCGA-EE-A2MU-06 10 115963294 115963294 G A TDRD1 Missense_Mutation p.E317K 0.21 deleterious(0) probably_damaging(0.953) TCGA-EE-A2MU-06 10 118969539 118969539 C T KCNK18 Missense_Mutation p.S295F 0.23 deleterious(0.01) possibly_damaging(0.457) TCGA-EE-A2MU-06 10 121571402 121571402 G A INPP5F Missense_Mutation p.M607I 0.12 tolerated(0.09) probably_damaging(0.958) TCGA-EE-A2MU-06 10 124248996 124248996 G A HTRA1 Missense_Mutation p.E211K 0.10 deleterious(0.01) possibly_damaging(0.733) TCGA-EE-A2MU-06 10 124390709 124390709 G A DMBT1 Silent p.G1957G 0.08 TCGA-EE-A2MU-06 10 124457698 124457698 C T C10orf120 Missense_Mutation p.E187K 0.12 tolerated(0.13) benign(0.217) TCGA-EE-A2MU-06 10 127697113 127697113 C T FANK1 Silent p.P281P 0.15 TCGA-EE-A2MU-06 10 1313244 1313244 G A ADARB2 Silent p.S366S 0.42 TCGA-EE-A2MU-06 10 131640528 131640528 G A EBF3 Silent p.I399I 0.13 TCGA-EE-A2MU-06 10 24908778 24908778 G A ARHGAP21 Silent p.S682S 0.32 TCGA-EE-A2MU-06 10 27149684 27149684 A G ABI1 Missense_Mutation p.Y37H 0.29 deleterious(0) probably_damaging(0.934) TCGA-EE-A2MU-06 10 33515168 33515168 G A NRP1 Missense_Mutation p.A344V 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 10 46321385 46321385 C T AGAP4 Missense_Mutation p.G657D 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MU-06 10 50363893 50363893 C T C10orf128 3'UTR 0.13 TCGA-EE-A2MU-06 10 50594752 50594752 C T DRGX Silent p.K134K 0.18 TCGA-EE-A2MU-06 10 54042050 54042050 C T PRKG1 Silent p.I561I 0.35 TCGA-EE-A2MU-06 10 69751987 69751987 G A HERC4 Missense_Mutation p.P414S 0.25 tolerated(0.84) benign(0) TCGA-EE-A2MU-06 10 70333230 70333230 C T TET1 Missense_Mutation p.P379S 0.10 tolerated(0.18) benign(0.156) TCGA-EE-A2MU-06 10 71142522 71142522 C T HK1 Silent p.F519F 0.10 TCGA-EE-A2MU-06 10 72498716 72498716 G A ADAMTS14 Missense_Mutation p.R576Q 0.11 tolerated(0.11) possibly_damaging(0.577) TCGA-EE-A2MU-06 10 73048347 73048347 G A UNC5B Nonsense_Mutation p.W308* 0.09 TCGA-EE-A2MU-06 10 75072273 75072273 C T TTC18 Silent p.V417V 0.12 TCGA-EE-A2MU-06 10 76854536 76854536 G A DUSP13 Silent p.I215I 0.25 TCGA-EE-A2MU-06 10 85981712 85981712 C T LRIT2 Silent p.G539G 0.07 TCGA-EE-A2MU-06 10 96018889 96018889 G A PLCE1 Missense_Mutation p.D1266N 0.12 tolerated(0.12) benign(0.043) TCGA-EE-A2MU-06 10 99343350 99343350 G A ANKRD2 Silent p.T317T 0.23 TCGA-EE-A2MU-06 11 102662226 102662226 C T MMP1 Missense_Mutation p.G345E 0.30 tolerated(0.12) probably_damaging(0.992) TCGA-EE-A2MU-06 11 1029567 1029567 G A MUC6 Missense_Mutation p.T355I 0.22 unknown(0) TCGA-EE-A2MU-06 11 105769100 105769100 C T GRIA4 Missense_Mutation p.R278C 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-EE-A2MU-06 11 10615060 10615060 G A MRVI1 Silent p.S718S 0.33 TCGA-EE-A2MU-06 11 10645346 10645346 C T MRVI1 Missense_Mutation p.E476K 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 11 117376338 117376338 C T DSCAML1 Silent p.R691R 0.33 TCGA-EE-A2MU-06 11 117774375 117774375 T A TMPRSS13 Missense_Mutation p.M558L 0.42 deleterious(0.02) possibly_damaging(0.645) TCGA-EE-A2MU-06 11 118773223 118773223 G A BCL9L Missense_Mutation p.S410F 0.17 probably_damaging(0.999) TCGA-EE-A2MU-06 11 118967749 118967749 A T DPAGT1 Missense_Mutation p.S396T 0.32 tolerated(0.22) benign(0.039) TCGA-EE-A2MU-06 11 121476278 121476278 G A SORL1 Missense_Mutation p.G1649E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 11 122795661 122795661 G A C11orf63 Missense_Mutation p.M307I 0.28 tolerated(0.96) benign(0.001) TCGA-EE-A2MU-06 11 123886770 123886770 C T OR10G4 Silent p.F163F 0.22 TCGA-EE-A2MU-06 11 123894487 123894487 C T OR10G9 Silent p.F256F 0.17 TCGA-EE-A2MU-06 11 125766075 125766075 A G PUS3 Silent p.N35N 0.14 TCGA-EE-A2MU-06 11 130059739 130059739 C T ST14 Silent p.P182P 0.25 TCGA-EE-A2MU-06 11 130059740 130059740 C T ST14 Missense_Mutation p.P183S 0.23 tolerated(0.32) benign(0.098) TCGA-EE-A2MU-06 11 14063082 14063082 A C SPON1 RNA 0.08 TCGA-EE-A2MU-06 11 14535181 14535181 G A PSMA1 Missense_Mutation p.S166F 0.21 deleterious(0) probably_damaging(0.987) TCGA-EE-A2MU-06 11 14865471 14865471 C T PDE3B Missense_Mutation p.P807S 0.35 deleterious(0.05) probably_damaging(1) TCGA-EE-A2MU-06 11 16822622 16822622 C T PLEKHA7 Missense_Mutation p.E770K 0.16 deleterious(0) probably_damaging(0.915) TCGA-EE-A2MU-06 11 18754841 18754841 C T PTPN5 Missense_Mutation p.V387M 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 11 28311863 28311863 C T METTL15 Missense_Mutation p.S173F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 11 30938460 30938460 C T DCDC1 Missense_Mutation p.E1137K 0.36 tolerated(0.15) possibly_damaging(0.486) TCGA-EE-A2MU-06 11 32635300 32635300 C T CCDC73 Missense_Mutation p.G855E 0.13 tolerated(0.33) benign(0.054) TCGA-EE-A2MU-06 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.24 deleterious(0.04) possibly_damaging(0.776) TCGA-EE-A2MU-06 11 5475345 5475345 G A OR51I2 Missense_Mutation p.M209I 0.10 tolerated(0.31) benign(0.11) TCGA-EE-A2MU-06 11 5537042 5537042 T G UBQLNL Missense_Mutation p.E210D 0.14 deleterious(0.01) possibly_damaging(0.475) TCGA-EE-A2MU-06 11 55405836 55405836 G A OR4P4 Translation_Start_Site p.M1? 0.29 deleterious(0.01) benign(0.378) TCGA-EE-A2MU-06 11 55653274 55653274 C T TRIM51 Missense_Mutation p.H124Y 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 11 55861147 55861147 C T OR8I2 Missense_Mutation p.R122C 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A2MU-06 11 58604580 58604580 C T GLYATL2 Missense_Mutation p.M128I 0.28 tolerated(0.13) benign(0) TCGA-EE-A2MU-06 11 59189494 59189494 C T OR5A2 Silent p.G311G 0.14 TCGA-EE-A2MU-06 11 5968788 5968788 C T OR56A3 Missense_Mutation p.S71F 0.24 deleterious(0) probably_damaging(0.98) TCGA-EE-A2MU-06 11 5969142 5969142 C T OR56A3 Missense_Mutation p.S189F 0.38 deleterious(0) probably_damaging(0.981) TCGA-EE-A2MU-06 11 62747245 62747245 C T SLC22A6 Missense_Mutation p.A405T 0.11 deleterious(0) possibly_damaging(0.472) TCGA-EE-A2MU-06 11 63129941 63129941 G A SLC22A10 3'UTR 0.28 TCGA-EE-A2MU-06 11 64023222 64023222 C T PLCB3 Silent p.S209S 0.14 TCGA-EE-A2MU-06 11 6453013 6453013 G A HPX Silent p.F329F 0.12 TCGA-EE-A2MU-06 11 65266481 65266481 C T MALAT1 RNA 0.20 TCGA-EE-A2MU-06 11 67816682 67816682 C T TCIRG1 Missense_Mutation p.A603V 0.27 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MU-06 11 67939171 67939171 C T SUV420H1 Missense_Mutation p.R220Q 0.17 deleterious(0.01) possibly_damaging(0.901) TCGA-EE-A2MU-06 11 6816144 6816144 G A OR6A2 Missense_Mutation p.R266W 0.17 deleterious(0.04) probably_damaging(1) TCGA-EE-A2MU-06 11 6867376 6867376 C T OR10A5 Missense_Mutation p.P155S 0.13 tolerated(0.05) possibly_damaging(0.764) TCGA-EE-A2MU-06 11 6942379 6942379 C T OR2D3 Silent p.I49I 0.11 TCGA-EE-A2MU-06 11 7021272 7021272 G A ZNF214 Missense_Mutation p.H548Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 11 70333073 70333073 C T SHANK2 Missense_Mutation p.D1110N 0.27 deleterious(0) benign(0.063) TCGA-EE-A2MU-06 11 72945204 72945204 G A P2RY2 5'UTR 0.16 TCGA-EE-A2MU-06 11 72946232 72946232 G A P2RY2 Missense_Mutation p.R343K 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A2MU-06 11 73022436 73022436 T C ARHGEF17 Missense_Mutation p.I918T 0.20 tolerated_low_confidence(0.78) benign(0.002) TCGA-EE-A2MU-06 11 76895799 76895799 C T MYO7A Intron 0.38 TCGA-EE-A2MU-06 11 92086811 92086811 C T FAT3 Silent p.I511I 0.27 TCGA-EE-A2MU-06 11 94169038 94169038 C T MRE11A Missense_Mutation p.E652K 0.16 deleterious_low_confidence(0.01) benign(0.242) TCGA-EE-A2MU-06 12 10218304 10218304 C T CLEC9A 3'UTR 0.20 TCGA-EE-A2MU-06 12 104174101 104174101 C T NT5DC3 Nonsense_Mutation p.W457* 0.13 TCGA-EE-A2MU-06 12 113314621 113314621 C T RPH3A Missense_Mutation p.P374L 0.12 deleterious(0.01) benign(0.005) TCGA-EE-A2MU-06 12 113448304 113448304 T G OAS2 3'UTR 0.13 TCGA-EE-A2MU-06 12 119909840 119909840 C T CCDC60 Missense_Mutation p.A71V 0.12 tolerated(0.37) benign(0.117) TCGA-EE-A2MU-06 12 119960774 119960774 C T CCDC60 Silent p.S357S 0.15 TCGA-EE-A2MU-06 12 119978426 119978426 G A CCDC60 Missense_Mutation p.R520Q 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 12 120575528 120575528 T G GCN1L1 Missense_Mutation p.S2162R 0.23 benign(0.209) TCGA-EE-A2MU-06 12 120575551 120575551 T A GCN1L1 Missense_Mutation p.E2154V 0.15 possibly_damaging(0.827) TCGA-EE-A2MU-06 12 120750872 120750872 G A SIRT4 3'UTR 0.16 TCGA-EE-A2MU-06 12 125621227 125621227 G A AACS Silent p.V566V 0.16 TCGA-EE-A2MU-06 12 125834396 125834396 G A TMEM132B Missense_Mutation p.D151N 0.20 tolerated(0.29) benign(0.009) TCGA-EE-A2MU-06 12 13243455 13243455 C T GSG1 Missense_Mutation p.E116K 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A2MU-06 12 13716319 13716319 G A GRIN2B Missense_Mutation p.P1285S 0.13 tolerated(0.58) benign(0.192) TCGA-EE-A2MU-06 12 1943561 1943561 G A LRTM2 Missense_Mutation p.D263N 0.12 tolerated(0.26) benign(0.018) TCGA-EE-A2MU-06 12 22059109 22059109 C T ABCC9 Missense_Mutation p.M523I 0.11 tolerated(0.21) benign(0.001) TCGA-EE-A2MU-06 12 22063888 22063888 C T ABCC9 Missense_Mutation p.E346K 0.17 deleterious(0) benign(0.415) TCGA-EE-A2MU-06 12 2224708 2224708 G A CACNA1C Nonsense_Mutation p.W123* 0.11 TCGA-EE-A2MU-06 12 40702473 40702473 C T LRRK2 Silent p.L1388L 0.14 TCGA-EE-A2MU-06 12 4736365 4736365 G A AKAP3 Missense_Mutation p.P568L 0.09 tolerated(0.18) benign(0.01) TCGA-EE-A2MU-06 12 4919804 4919804 C T KCNA6 Silent p.F199F 0.12 TCGA-EE-A2MU-06 12 49225073 49225073 T A DDX23 Silent p.G697G 0.18 TCGA-EE-A2MU-06 12 50295091 50295091 C T FAIM2 Silent p.K11K 0.12 TCGA-EE-A2MU-06 12 52963682 52963682 G A KRT74 Silent p.I365I 0.23 TCGA-EE-A2MU-06 12 53880233 53880233 T A MAP3K12 Missense_Mutation p.I207F 0.11 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MU-06 12 55846693 55846693 G A OR6C2 Silent p.R232R 0.12 TCGA-EE-A2MU-06 12 56720705 56720705 G A PAN2 Missense_Mutation p.P320S 0.11 tolerated(0.27) benign(0.045) TCGA-EE-A2MU-06 12 57114700 57114700 G A NACA Missense_Mutation p.P205L 0.10 tolerated_low_confidence(0.12) benign(0) TCGA-EE-A2MU-06 12 57351060 57351060 C T RDH16 Missense_Mutation p.E63K 0.21 deleterious(0) probably_damaging(0.938) TCGA-EE-A2MU-06 12 57424050 57424050 C T MYO1A Silent p.R845R 0.19 TCGA-EE-A2MU-06 12 57430593 57430593 G A MYO1A Missense_Mutation p.S746F 0.17 deleterious(0.01) possibly_damaging(0.877) TCGA-EE-A2MU-06 12 57606347 57606347 C T LRP1 3'UTR 0.33 TCGA-EE-A2MU-06 12 66923614 66923614 G A GRIP1 Nonsense_Mutation p.R167* 0.17 TCGA-EE-A2MU-06 12 68719371 68719371 A C MDM1 Intron 0.16 TCGA-EE-A2MU-06 12 70049133 70049133 C T BEST3 Missense_Mutation p.D521N 0.14 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A2MU-06 12 7177387 7177387 C T C1S Missense_Mutation p.S500F 0.20 deleterious(0.04) benign(0.435) TCGA-EE-A2MU-06 12 72866856 72866856 G A TRHDE Missense_Mutation p.D449N 0.13 tolerated(1) benign(0.231) TCGA-EE-A2MU-06 12 7635262 7635262 C T CD163 Missense_Mutation p.R1075Q 0.12 tolerated(0.61) benign(0.007) TCGA-EE-A2MU-06 12 80714217 80714217 C T OTOGL Missense_Mutation p.S1264F 0.12 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MU-06 12 81111089 81111089 G A MYF5 Missense_Mutation p.D83N 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 12 9345243 9345243 G A PZP Silent p.S449S 0.16 TCGA-EE-A2MU-06 12 94641880 94641880 C T PLXNC1 Nonsense_Mutation p.Q864* 0.14 TCGA-EE-A2MU-06 12 95867875 95867875 C T METAP2 5'UTR 0.32 TCGA-EE-A2MU-06 13 100517114 100517114 C T CLYBL Missense_Mutation p.L195F 0.10 tolerated(0.59) benign(0.013) TCGA-EE-A2MU-06 13 108922354 108922354 C T TNFSF13B Silent p.P37P 0.12 TCGA-EE-A2MU-06 13 24895823 24895823 G T C1QTNF9 Nonsense_Mutation p.G307* 0.11 TCGA-EE-A2MU-06 13 28578193 28578193 G A FLT3 Missense_Mutation p.S993L 0.17 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-EE-A2MU-06 13 28896930 28896930 C T FLT1 Missense_Mutation p.E984K 0.12 tolerated(0.09) possibly_damaging(0.869) TCGA-EE-A2MU-06 13 36382405 36382405 C T DCLK1 Missense_Mutation p.D607N 0.11 deleterious(0.01) possibly_damaging(0.728) TCGA-EE-A2MU-06 13 39422804 39422804 G A FREM2 Missense_Mutation p.D2126N 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A2MU-06 13 46287544 46287544 C T SPERT Silent p.F128F 0.15 TCGA-EE-A2MU-06 13 52439511 52439511 C T CCDC70 5'UTR 0.13 TCGA-EE-A2MU-06 13 53419004 53419004 G A PCDH8 Silent p.S968S 0.14 TCGA-EE-A2MU-06 13 61985330 61985330 C T PCDH20 3'UTR 0.20 TCGA-EE-A2MU-06 13 77619581 77619581 C A MYCBP2 Missense_Mutation p.V4619F 0.12 probably_damaging(0.979) TCGA-EE-A2MU-06 13 79191089 79191089 G A RNF219 Silent p.S269S 0.12 TCGA-EE-A2MU-06 13 84455007 84455007 G A SLITRK1 Silent p.N212N 0.12 TCGA-EE-A2MU-06 13 86369460 86369460 C T SLITRK6 Missense_Mutation p.G395E 0.16 deleterious(0) probably_damaging(0.978) TCGA-EE-A2MU-06 13 88330434 88330434 G A SLITRK5 Missense_Mutation p.E931K 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-EE-A2MU-06 13 93879740 93879740 C T GPC6 Missense_Mutation p.P11S 0.17 tolerated(0.55) benign(0) TCGA-EE-A2MU-06 13 99364143 99364143 G A SLC15A1 Missense_Mutation p.P289S 0.13 deleterious(0) possibly_damaging(0.791) TCGA-EE-A2MU-06 14 101201188 101201188 C T DLK1 Silent p.I369I 0.26 TCGA-EE-A2MU-06 14 102901109 102901109 C T TECPR2 Missense_Mutation p.S652F 0.19 tolerated_low_confidence(0.5) benign(0.219) TCGA-EE-A2MU-06 14 103167667 103167667 G A RCOR1 Silent p.Q166Q 0.07 TCGA-EE-A2MU-06 14 104624133 104624133 C T KIF26A Silent p.V259V 0.25 TCGA-EE-A2MU-06 14 106791043 106791043 G A IGHV3-30 Silent p.L105L 0.26 TCGA-EE-A2MU-06 14 107083466 107083466 G A IGHV4-59 Silent p.G46G 0.27 TCGA-EE-A2MU-06 14 107178856 107178856 G A IGHV2-70 Silent p.D107D 0.06 TCGA-EE-A2MU-06 14 19563436 19563436 C T POTEG Missense_Mutation p.S317L 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-EE-A2MU-06 14 20692782 20692782 C T OR11H6 Missense_Mutation p.P305L 0.14 deleterious(0) possibly_damaging(0.452) TCGA-EE-A2MU-06 14 21945695 21945695 C T TOX4 Missense_Mutation p.P16L 0.10 tolerated(0.11) benign(0.024) TCGA-EE-A2MU-06 14 21961098 21961098 C G TOX4 Silent p.P441P 0.15 TCGA-EE-A2MU-06 14 22192091 22192091 G A TRAV3 5'UTR 0.20 TCGA-EE-A2MU-06 14 22294006 22294006 G A TRAV10 Missense_Mutation p.G37E 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A2MU-06 14 22356412 22356412 G A TRAV12-2 Missense_Mutation p.E24K 0.24 tolerated(0.32) benign(0.009) TCGA-EE-A2MU-06 14 22476386 22476386 G A TRAV19 Missense_Mutation p.D106N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 14 22772281 22772281 G A TRAV39 Silent p.G58G 0.19 TCGA-EE-A2MU-06 14 23890224 23890224 C T MYH7 Silent p.R1093R 0.10 TCGA-EE-A2MU-06 14 23900816 23900816 C T MYH7 Missense_Mutation p.R237Q 0.07 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MU-06 14 24676702 24676702 C T TSSK4 Missense_Mutation p.S274F 0.21 deleterious(0) probably_damaging(0.94) TCGA-EE-A2MU-06 14 31827966 31827966 G A HEATR5A Missense_Mutation p.S470L 0.25 tolerated(0.07) benign(0.016) TCGA-EE-A2MU-06 14 36840694 36840694 G A DPPA3P2 RNA 0.12 TCGA-EE-A2MU-06 14 58813764 58813764 A G ARID4A Silent p.Q367Q 0.19 TCGA-EE-A2MU-06 14 61180337 61180337 G A SIX4 Missense_Mutation p.R712C 0.26 deleterious_low_confidence(0) benign(0.306) TCGA-EE-A2MU-06 14 63175152 63175152 C T KCNH5 Missense_Mutation p.D681N 0.23 deleterious(0) benign(0.007) TCGA-EE-A2MU-06 14 67671581 67671581 G A FAM71D Silent p.R229R 0.15 TCGA-EE-A2MU-06 14 70924646 70924646 G A ADAM21 Missense_Mutation p.E144K 0.14 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A2MU-06 14 75266252 75266252 G A YLPM1 Missense_Mutation p.E1418K 0.10 probably_damaging(0.979) TCGA-EE-A2MU-06 14 89093244 89093244 C T EML5 Missense_Mutation p.G1560R 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 14 91386649 91386649 A G RPS6KA5 Missense_Mutation p.V236A 0.24 tolerated(0.14) probably_damaging(0.969) TCGA-EE-A2MU-06 14 92265364 92265364 C T TC2N Silent p.R202R 0.27 TCGA-EE-A2MU-06 14 94120324 94120324 G A UNC79 Missense_Mutation p.D1941N 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MU-06 14 95573953 95573953 G A DICER1 Silent p.I932I 0.10 TCGA-EE-A2MU-06 14 96135887 96135887 G A TCL6 Splice_Site 0.11 TCGA-EE-A2MU-06 14 96157638 96157638 C T TCL1B Nonsense_Mutation p.Q123* 0.12 TCGA-EE-A2MU-06 14 96730842 96730842 T C BDKRB1 Silent p.L275L 0.14 TCGA-EE-A2MU-06 15 101983763 101983763 G A PCSK6 Nonsense_Mutation p.Q133* 0.14 TCGA-EE-A2MU-06 15 20193368 20193368 C T IGHV3OR15-7 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-EE-A2MU-06 15 20644055 20644055 G A HERC2P3 RNA 0.26 TCGA-EE-A2MU-06 15 21051221 21051221 C T POTEB2 Silent p.R413R 0.10 TCGA-EE-A2MU-06 15 25324133 25324133 C T SNORD116-12 3'Flank 0.19 TCGA-EE-A2MU-06 15 32935871 32935871 T C SCG5 Silent p.A26A 0.19 TCGA-EE-A2MU-06 15 32935872 32935872 T C SCG5 Missense_Mutation p.Y27H 0.18 tolerated_low_confidence(1) benign(0.003) TCGA-EE-A2MU-06 15 33765704 33765704 C T RYR3 Missense_Mutation p.R46C 0.12 probably_damaging(0.992) TCGA-EE-A2MU-06 15 34080525 34080525 G A RYR3 Silent p.E3232E 0.18 TCGA-EE-A2MU-06 15 34130703 34130703 G A RYR3 Silent p.K4174K 0.32 TCGA-EE-A2MU-06 15 43452952 43452952 C T TMEM62 Missense_Mutation p.P419L 0.22 tolerated(1) benign(0.002) TCGA-EE-A2MU-06 15 44944342 44944342 G A SPG11 Missense_Mutation p.S331F 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A2MU-06 15 50926735 50926735 G A TRPM7 Missense_Mutation p.P284L 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 15 55520877 55520877 A C RAB27A Missense_Mutation p.D91E 0.34 tolerated(0.05) benign(0.349) TCGA-EE-A2MU-06 15 57744421 57744421 A G CGNL1 Missense_Mutation p.E663G 0.32 deleterious(0.02) benign(0.211) TCGA-EE-A2MU-06 15 58287308 58287308 C T ALDH1A2 Missense_Mutation p.E175K 0.23 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2MU-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.28 tolerated(0.08) probably_damaging(0.913) TCGA-EE-A2MU-06 15 66729163 66729163 C T MAP2K1 Missense_Mutation p.P124L 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MU-06 15 69011843 69011843 C T CORO2B Silent p.V421V 0.34 TCGA-EE-A2MU-06 15 74627459 74627459 G A CCDC33 Intron 0.26 TCGA-EE-A2MU-06 15 78893897 78893897 C T CHRNA3 Missense_Mutation p.E363K 0.29 tolerated(0.65) benign(0.009) TCGA-EE-A2MU-06 15 83456191 83456191 C T FSD2 5'UTR 0.12 TCGA-EE-A2MU-06 15 85431019 85431019 G A SLC28A1 Missense_Mutation p.E10K 0.26 tolerated(0.17) benign(0.004) TCGA-EE-A2MU-06 15 95022241 95022241 G A MCTP2 Missense_Mutation p.R872Q 0.23 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A2MU-06 15 99500542 99500542 C T IGF1R Silent p.A1325A 0.35 TCGA-EE-A2MU-06 16 10525283 10525283 G A ATF7IP2 Nonsense_Mutation p.W269* 0.14 TCGA-EE-A2MU-06 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.09 TCGA-EE-A2MU-06 16 19547897 19547897 C T CCP110 Silent p.L302L 0.23 TCGA-EE-A2MU-06 16 20329667 20329667 C T GP2 Missense_Mutation p.E368K 0.13 deleterious(0.04) possibly_damaging(0.833) TCGA-EE-A2MU-06 16 20498062 20498062 C T ACSM2A 3'UTR 0.16 TCGA-EE-A2MU-06 16 20673121 20673121 G A ACSM1 Silent p.F329F 0.16 TCGA-EE-A2MU-06 16 21261615 21261615 C T ANKS4B Missense_Mutation p.S243L 0.08 tolerated(0.42) benign(0.002) TCGA-EE-A2MU-06 16 21629267 21629267 C T METTL9 Silent p.T146T 0.14 TCGA-EE-A2MU-06 16 24046747 24046747 G A PRKCB Missense_Mutation p.M136I 0.14 tolerated(0.08) benign(0.005) TCGA-EE-A2MU-06 16 24946942 24946942 G A ARHGAP17 Silent p.D581D 0.13 TCGA-EE-A2MU-06 16 2607941 2607941 C T PDPK1 Missense_Mutation p.L88F 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A2MU-06 16 27665971 27665971 T G KIAA0556 Intron 0.14 TCGA-EE-A2MU-06 16 28493843 28493843 G A CLN3 Silent p.P287P 0.11 TCGA-EE-A2MU-06 16 31388540 31388540 C T ITGAX Nonsense_Mutation p.Q915* 0.14 TCGA-EE-A2MU-06 16 31391663 31391663 C T ITGAX Missense_Mutation p.T1046I 0.16 tolerated(0.76) benign(0.002) TCGA-EE-A2MU-06 16 4312623 4312623 C T TFAP4 Missense_Mutation p.E57K 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 16 47628101 47628101 C T PHKB Missense_Mutation p.P394S 0.10 tolerated(0.11) possibly_damaging(0.672) TCGA-EE-A2MU-06 16 48167618 48167618 G A ABCC12 Missense_Mutation p.R370C 0.09 tolerated(0.18) benign(0.022) TCGA-EE-A2MU-06 16 48180277 48180277 G A ABCC12 Missense_Mutation p.S20F 0.16 deleterious(0) benign(0.418) TCGA-EE-A2MU-06 16 48226442 48226442 G A ABCC11 Missense_Mutation p.L899F 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A2MU-06 16 48286166 48286166 C T LONP2 Missense_Mutation p.P120S 0.11 tolerated(0.4) possibly_damaging(0.841) TCGA-EE-A2MU-06 16 49315257 49315257 G A CBLN1 Silent p.S40S 0.15 TCGA-EE-A2MU-06 16 49671203 49671203 G A ZNF423 Silent p.L620L 0.14 TCGA-EE-A2MU-06 16 55517950 55517950 C T MMP2 Silent p.L135L 0.12 TCGA-EE-A2MU-06 16 55857487 55857487 G A CES1 Missense_Mutation p.R172C 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 16 67006790 67006790 C T CES3 Silent p.P518P 0.23 TCGA-EE-A2MU-06 16 71015351 71015351 G A HYDIN Silent p.L1485L 0.19 TCGA-EE-A2MU-06 16 72164148 72164148 C T PMFBP1 Missense_Mutation p.M582I 0.14 tolerated(0.64) benign(0.002) TCGA-EE-A2MU-06 16 81181855 81181855 G A PKD1L2 RNA 0.13 TCGA-EE-A2MU-06 16 9857172 9857172 G A GRIN2A Missense_Mutation p.S1410L 0.10 tolerated(0.31) possibly_damaging(0.877) TCGA-EE-A2MU-06 17 10415854 10415854 C T MYH1 Missense_Mutation p.E340K 0.23 deleterious(0) benign(0.115) TCGA-EE-A2MU-06 17 10428286 10428286 C T MYH2 Missense_Mutation p.E1587K 0.12 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A2MU-06 17 10436891 10436891 C T MYH2 Missense_Mutation p.A747T 0.16 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A2MU-06 17 11622765 11622765 C T DNAH9 Silent p.I1889I 0.14 TCGA-EE-A2MU-06 17 18181278 18181278 G A TOP3A Silent p.F846F 0.27 TCGA-EE-A2MU-06 17 20921333 20921333 G A USP22 Silent p.F204F 0.26 TCGA-EE-A2MU-06 17 21731410 21731410 G A UBBP4 Intron 0.09 TCGA-EE-A2MU-06 17 25967764 25967764 G A LGALS9 Missense_Mutation p.D100N 0.14 deleterious(0.02) benign(0.004) TCGA-EE-A2MU-06 17 27052510 27052510 C T TLCD1 Missense_Mutation p.C89Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MU-06 17 29120537 29120537 C T CRLF3 Missense_Mutation p.G253R 0.26 tolerated(0.17) benign(0.119) TCGA-EE-A2MU-06 17 30616032 30616032 G A RHBDL3 Silent p.L172L 0.17 TCGA-EE-A2MU-06 17 33690647 33690647 C T SLFN11 Silent p.V60V 0.14 TCGA-EE-A2MU-06 17 35822210 35822210 C T TADA2A Missense_Mutation p.L233F 0.16 tolerated(0.12) benign(0.031) TCGA-EE-A2MU-06 17 36486212 36486212 C T GPR179 Silent p.Q1080Q 0.25 TCGA-EE-A2MU-06 17 3922983 3922983 G A ZZEF1 Silent p.F2495F 0.26 TCGA-EE-A2MU-06 17 39594742 39594742 C T KRT38 Splice_Site p.X340_splice 0.23 TCGA-EE-A2MU-06 17 42334865 42334865 G A SLC4A1 Silent p.I493I 0.17 TCGA-EE-A2MU-06 17 4455771 4455771 G A MYBBP1A Silent p.L238L 0.22 TCGA-EE-A2MU-06 17 48050430 48050430 C T DLX4 Intron 0.11 TCGA-EE-A2MU-06 17 48050431 48050431 C T DLX4 Intron 0.13 TCGA-EE-A2MU-06 17 48433239 48433239 G A XYLT2 Missense_Mutation p.D396N 0.39 tolerated(0.09) possibly_damaging(0.688) TCGA-EE-A2MU-06 17 56344874 56344874 G A LPO Missense_Mutation p.E620K 0.13 tolerated(0.25) benign(0.008) TCGA-EE-A2MU-06 17 61958244 61958244 G A GH2 Missense_Mutation p.P115L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 17 6338369 6338369 C T AIPL1 Missense_Mutation p.G19E 0.24 tolerated(0.17) probably_damaging(1) TCGA-EE-A2MU-06 17 71223356 71223357 - G FAM104A Frame_Shift_Ins p.Q90Pfs*6 0.36 TCGA-EE-A2MU-06 17 72368044 72368044 C T GPR142 Missense_Mutation p.R232C 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A2MU-06 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 17 76045228 76045228 C T TNRC6C Nonsense_Mutation p.Q29* 0.19 TCGA-EE-A2MU-06 17 79478095 79478095 G A ACTG1 Missense_Mutation p.S281F 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A2MU-06 17 79517272 79517272 A G C17orf70 Splice_Site p.X416_splice 0.36 TCGA-EE-A2MU-06 18 12030427 12030427 G A IMPA2 Silent p.T279T 0.13 TCGA-EE-A2MU-06 18 13681760 13681760 G A FAM210A Missense_Mutation p.P106L 0.19 deleterious(0) benign(0.295) TCGA-EE-A2MU-06 18 19996025 19996025 G A CTAGE1 Missense_Mutation p.P584S 0.09 tolerated(0.23) benign(0.03) TCGA-EE-A2MU-06 18 22642656 22642656 C T ZNF521 3'UTR 0.14 TCGA-EE-A2MU-06 18 33836961 33836961 C T MOCOS Missense_Mutation p.S732F 0.12 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MU-06 18 43224002 43224002 C T SLC14A2 Silent p.L410L 0.10 TCGA-EE-A2MU-06 18 50734142 50734142 C T DCC Missense_Mutation p.P606S 0.10 tolerated(0.07) possibly_damaging(0.675) TCGA-EE-A2MU-06 18 53070735 53070735 C T TCF4 Missense_Mutation p.G209S 0.10 tolerated(0.27) benign(0.006) TCGA-EE-A2MU-06 18 56204723 56204723 G A ALPK2 Missense_Mutation p.S899L 0.17 tolerated(0.12) benign(0.149) TCGA-EE-A2MU-06 18 5956068 5956068 C T L3MBTL4 3'UTR 0.38 TCGA-EE-A2MU-06 18 59972714 59972714 C T KIAA1468 Nonsense_Mutation p.Q1200* 0.13 TCGA-EE-A2MU-06 18 61468108 61468108 G A SERPINB7 Silent p.G202G 0.09 TCGA-EE-A2MU-06 18 61621780 61621780 G A HMSD Missense_Mutation p.D71N 0.23 tolerated(0.13) benign(0.102) TCGA-EE-A2MU-06 18 677819 677819 G A ENOSF1 Silent p.F331F 0.15 TCGA-EE-A2MU-06 18 71797881 71797881 G A FBXO15 Silent p.I115I 0.16 TCGA-EE-A2MU-06 19 10249161 10249161 G A DNMT1 Silent p.L1357L 0.14 TCGA-EE-A2MU-06 19 1046387 1046387 C T ABCA7 Missense_Mutation p.P535L 0.13 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MU-06 19 10568687 10568687 G A PDE4A Missense_Mutation p.G337E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 19 15233527 15233527 G A ILVBL Silent p.G231G 0.17 TCGA-EE-A2MU-06 19 15350007 15350007 G A BRD4 Silent p.S1215S 0.15 TCGA-EE-A2MU-06 19 15350008 15350008 G A BRD4 Missense_Mutation p.S1215F 0.15 possibly_damaging(0.485) TCGA-EE-A2MU-06 19 15484089 15484089 G A AKAP8 Missense_Mutation p.P145L 0.11 tolerated(0.52) benign(0.009) TCGA-EE-A2MU-06 19 16860357 16860357 C T NWD1 Missense_Mutation p.L302F 0.18 deleterious(0.02) possibly_damaging(0.583) TCGA-EE-A2MU-06 19 17091485 17091485 T G CPAMD8 Missense_Mutation p.E516D 0.11 tolerated(0.14) benign(0.012) TCGA-EE-A2MU-06 19 18279570 18279570 C T PIK3R2 Missense_Mutation p.P615S 0.21 deleterious(0.01) benign(0.228) TCGA-EE-A2MU-06 19 18321849 18321849 C T PDE4C Missense_Mutation p.E677K 0.19 tolerated_low_confidence(0.05) benign(0) TCGA-EE-A2MU-06 19 19035781 19035781 C T DDX49 Silent p.A340A 0.31 TCGA-EE-A2MU-06 19 19240968 19240968 G A TMEM161A Missense_Mutation p.P198S 0.24 tolerated(0.29) benign(0.402) TCGA-EE-A2MU-06 19 22364005 22364005 C T ZNF676 Missense_Mutation p.E172K 0.11 tolerated(0.33) probably_damaging(0.971) TCGA-EE-A2MU-06 19 31039293 31039293 G A ZNF536 Missense_Mutation p.D923N 0.14 tolerated(0.07) probably_damaging(0.971) TCGA-EE-A2MU-06 19 33321457 33321457 G A SLC7A9 3'UTR 0.12 TCGA-EE-A2MU-06 19 34929578 34929578 C T UBA2 Missense_Mutation p.P163L 0.24 deleterious(0) possibly_damaging(0.897) TCGA-EE-A2MU-06 19 375772 375772 C T THEG Missense_Mutation p.E67K 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A2MU-06 19 39051791 39051791 C T RYR1 Silent p.I4107I 0.09 TCGA-EE-A2MU-06 19 4159755 4159755 C T CREB3L3 Silent p.L184L 0.11 TCGA-EE-A2MU-06 19 42270121 42270121 C T CEACAM6 Missense_Mutation p.T330I 0.19 tolerated(0.76) benign(0.004) TCGA-EE-A2MU-06 19 43233499 43233499 G A PSG3 Missense_Mutation p.S340L 0.12 deleterious(0) probably_damaging(0.948) TCGA-EE-A2MU-06 19 43411107 43411107 C T PSG6 Missense_Mutation p.E403K 0.08 tolerated(0.19) possibly_damaging(0.466) TCGA-EE-A2MU-06 19 4429574 4429574 C T CHAF1A Missense_Mutation p.R582C 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A2MU-06 19 44536205 44536205 C T ZNF222 Silent p.F166F 0.25 TCGA-EE-A2MU-06 19 44833910 44833910 G A ZNF112 Missense_Mutation p.L140F 0.16 tolerated(0.71) benign(0.26) TCGA-EE-A2MU-06 19 44891413 44891413 G A ZNF285 Missense_Mutation p.H332Y 0.29 tolerated(0.31) benign(0.017) TCGA-EE-A2MU-06 19 44934628 44934628 C T ZNF229 Missense_Mutation p.E110K 0.12 tolerated(0.48) probably_damaging(0.968) TCGA-EE-A2MU-06 19 45157261 45157261 G A PVR Missense_Mutation p.E273K 0.13 deleterious(0.03) possibly_damaging(0.581) TCGA-EE-A2MU-06 19 45997948 45997948 G A RTN2 Missense_Mutation p.P132L 0.17 tolerated_low_confidence(0.15) benign(0.004) TCGA-EE-A2MU-06 19 48220193 48220193 C T EHD2 Silent p.T108T 0.08 TCGA-EE-A2MU-06 19 49993749 49993749 C T RPL13A Missense_Mutation p.L58F 0.24 deleterious(0.03) benign(0.216) TCGA-EE-A2MU-06 19 50086932 50086932 C T PRRG2 Silent p.S73S 0.28 TCGA-EE-A2MU-06 19 51483667 51483667 G A KLK7 Missense_Mutation p.R100C 0.10 tolerated(0.1) probably_damaging(0.96) TCGA-EE-A2MU-06 19 51506275 51506275 G A KLK9 3'UTR 0.27 TCGA-EE-A2MU-06 19 51645996 51645996 C T SIGLEC7 Missense_Mutation p.R124C 0.15 deleterious(0) possibly_damaging(0.743) TCGA-EE-A2MU-06 19 51647767 51647767 C T SIGLEC7 Missense_Mutation p.P180S 0.15 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MU-06 19 52217175 52217175 G A HAS1 Silent p.F414F 0.08 TCGA-EE-A2MU-06 19 52249165 52249165 G A FPR1 3'UTR 0.07 TCGA-EE-A2MU-06 19 52272360 52272360 G A FPR2 Nonsense_Mutation p.W150* 0.08 TCGA-EE-A2MU-06 19 52394233 52394233 T A ZNF649 Nonsense_Mutation p.K386* 0.26 TCGA-EE-A2MU-06 19 54871657 54871657 G A LAIR1 Silent p.S129S 0.23 TCGA-EE-A2MU-06 19 55497556 55497556 C T NLRP2 Missense_Mutation p.L747F 0.23 tolerated(1) benign(0.007) TCGA-EE-A2MU-06 19 55505674 55505674 G A NLRP2 Missense_Mutation p.D916N 0.17 tolerated(0.13) benign(0.002) TCGA-EE-A2MU-06 19 56459268 56459268 G A NLRP8 5'UTR 0.16 TCGA-EE-A2MU-06 19 56953336 56953336 G A ZNF667 Missense_Mutation p.S343L 0.11 tolerated(0.09) benign(0.003) TCGA-EE-A2MU-06 19 57326527 57326527 C T PEG3 Missense_Mutation p.E1095K 0.10 tolerated(0.57) benign(0.022) TCGA-EE-A2MU-06 19 57333105 57333105 G A PEG3 Missense_Mutation p.L195F 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A2MU-06 19 57646221 57646221 G A ZIM3 3'UTR 0.23 TCGA-EE-A2MU-06 19 57646515 57646515 C T ZIM3 Missense_Mutation p.G397E 0.13 tolerated(0.26) probably_damaging(1) TCGA-EE-A2MU-06 19 6718157 6718157 G A C3 Missense_Mutation p.T151I 0.18 deleterious(0.04) benign(0.285) TCGA-EE-A2MU-06 19 7143027 7143027 G A INSR Missense_Mutation p.P781L 0.10 tolerated(0.55) benign(0.002) TCGA-EE-A2MU-06 19 8953934 8953934 C T MBD3L1 Missense_Mutation p.R194C 0.23 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-EE-A2MU-06 19 9074696 9074696 C T MUC16 Silent p.T4250T 0.11 TCGA-EE-A2MU-06 19 9407285 9407285 G A ZNF699 Silent p.F265F 0.10 TCGA-EE-A2MU-06 1 100357264 100357264 C T AGL Missense_Mutation p.L1018F 0.11 tolerated(0.06) possibly_damaging(0.836) TCGA-EE-A2MU-06 1 102270254 102270254 C T OLFM3 Missense_Mutation p.R306Q 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A2MU-06 1 109191189 109191189 C T HENMT1 Silent p.%3D 0.20 TCGA-EE-A2MU-06 1 109275946 109275946 C T FNDC7 Silent p.I644I 0.22 TCGA-EE-A2MU-06 1 110717561 110717561 G A SLC6A17 Silent p.K244K 0.21 TCGA-EE-A2MU-06 1 112999065 112999065 T C CTTNBP2NL Silent p.F317F 0.25 TCGA-EE-A2MU-06 1 115256527 115256527 C T NRAS Missense_Mutation p.E62K 0.20 deleterious(0.01) benign(0.003) TCGA-EE-A2MU-06 1 115256528 115256528 T G NRAS Missense_Mutation p.Q61H 0.19 deleterious(0) possibly_damaging(0.531) TCGA-EE-A2MU-06 1 11596628 11596628 C T PTCHD2 Missense_Mutation p.S1355F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 1 116228079 116228079 G A VANGL1 Silent p.Q415Q 0.12 TCGA-EE-A2MU-06 1 12170095 12170095 C T TNFRSF8 Intron 0.17 TCGA-EE-A2MU-06 1 12321145 12321145 G T VPS13D Silent p.G451G 0.22 TCGA-EE-A2MU-06 1 12919635 12919635 C T PRAMEF2 Silent p.F125F 0.19 TCGA-EE-A2MU-06 1 13695911 13695911 G A PRAMEF19 Nonsense_Mutation p.Q352* 0.15 TCGA-EE-A2MU-06 1 144864155 144864155 G A PDE4DIP Silent p.S1980S 0.07 TCGA-EE-A2MU-06 1 145474217 145474217 G A ANKRD34A Missense_Mutation p.D297N 0.33 tolerated(0.19) benign(0.01) TCGA-EE-A2MU-06 1 149884923 149884923 C T SV2A Missense_Mutation p.R157Q 0.16 tolerated(1) benign(0) TCGA-EE-A2MU-06 1 150804340 150804340 G A ARNT Silent p.F303F 0.30 TCGA-EE-A2MU-06 1 152059262 152059262 G A TCHHL1 Missense_Mutation p.P299L 0.12 tolerated(0.47) benign(0.025) TCGA-EE-A2MU-06 1 152080273 152080273 C T TCHH Missense_Mutation p.R1807K 0.14 benign(0.067) TCGA-EE-A2MU-06 1 152276763 152276763 C T FLG Silent p.R3533R 0.28 TCGA-EE-A2MU-06 1 152279862 152279862 C A FLG Missense_Mutation p.R2500S 0.12 benign(0.132) TCGA-EE-A2MU-06 1 152281969 152281969 C T FLG Missense_Mutation p.R1798Q 0.15 benign(0.238) TCGA-EE-A2MU-06 1 152285758 152285758 G A FLG Missense_Mutation p.S535L 0.24 benign(0.053) TCGA-EE-A2MU-06 1 152329471 152329471 C T FLG2 Missense_Mutation p.G264E 0.22 unknown(0) TCGA-EE-A2MU-06 1 152975896 152975896 C T SPRR3 Missense_Mutation p.P134S 0.21 tolerated(0.11) benign(0.103) TCGA-EE-A2MU-06 1 153004923 153004923 C T SPRR1B Silent p.I34I 0.16 TCGA-EE-A2MU-06 1 153270486 153270486 G A PGLYRP3 Silent p.S324S 0.27 TCGA-EE-A2MU-06 1 154031059 154031059 C T NUP210L Silent p.E987E 0.15 TCGA-EE-A2MU-06 1 154687452 154687452 G A KCNN3 Missense_Mutation p.R577W 0.28 deleterious(0) probably_damaging(0.992) TCGA-EE-A2MU-06 1 155264143 155264143 G A PKLR Silent p.I333I 0.19 TCGA-EE-A2MU-06 1 155450784 155450784 C A ASH1L Missense_Mutation p.C626F 0.19 tolerated_low_confidence(0.92) benign(0.002) TCGA-EE-A2MU-06 1 157514150 157514150 G A FCRL5 Missense_Mutation p.A249V 0.13 tolerated(0.27) possibly_damaging(0.595) TCGA-EE-A2MU-06 1 157773774 157773774 G A FCRL1 Silent p.A60A 0.22 TCGA-EE-A2MU-06 1 158369054 158369054 G A OR10T2 Missense_Mutation p.S68L 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MU-06 1 159505536 159505536 G A OR10J5 Missense_Mutation p.H88Y 0.15 tolerated(1) benign(0) TCGA-EE-A2MU-06 1 160254922 160254922 C T PEX19 5'UTR 0.18 TCGA-EE-A2MU-06 1 160254923 160254923 C T PEX19 5'UTR 0.18 TCGA-EE-A2MU-06 1 160786540 160786540 C G LY9 Nonsense_Mutation p.S410* 0.17 TCGA-EE-A2MU-06 1 161201215 161201215 C T NR1I3 Missense_Mutation p.E200K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 1 165623542 165623542 C A MGST3 Silent p.A92A 0.22 TCGA-EE-A2MU-06 1 167023522 167023522 G A GPA33 3'UTR 0.08 TCGA-EE-A2MU-06 1 170927626 170927626 G A MROH9 Missense_Mutation p.D33N 0.18 tolerated(0.12) benign(0.212) TCGA-EE-A2MU-06 1 171080000 171080000 C T FMO3 Missense_Mutation p.P230L 0.13 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MU-06 1 171251361 171251361 C T FMO1 Missense_Mutation p.P358S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 1 172501664 172501664 C T SUCO 5'Flank 0.26 TCGA-EE-A2MU-06 1 173628333 173628333 G A ANKRD45 Silent p.I75I 0.32 TCGA-EE-A2MU-06 1 175105027 175105027 G A TNN Nonsense_Mutation p.W1126* 0.13 TCGA-EE-A2MU-06 1 176679284 176679284 C T PAPPA2 Missense_Mutation p.S1208F 0.14 tolerated(0.64) benign(0.387) TCGA-EE-A2MU-06 1 176760600 176760600 G A PAPPA2 Missense_Mutation p.E1668K 0.14 tolerated(0.28) benign(0.432) TCGA-EE-A2MU-06 1 176852015 176852015 C T ASTN1 Silent p.L1114L 0.08 TCGA-EE-A2MU-06 1 179638490 179638490 C T TDRD5 Silent p.P937P 0.07 TCGA-EE-A2MU-06 1 180165587 180165587 G A QSOX1 Silent p.R553R 0.12 TCGA-EE-A2MU-06 1 180165588 180165588 G A QSOX1 Missense_Mutation p.D554N 0.11 tolerated(0.36) benign(0.004) TCGA-EE-A2MU-06 1 185986189 185986189 C T HMCN1 Silent p.P1762P 0.10 TCGA-EE-A2MU-06 1 186304568 186304568 G A TPR Nonsense_Mutation p.Q1605* 0.18 TCGA-EE-A2MU-06 1 196227408 196227408 G A KCNT2 Missense_Mutation p.L1043F 0.30 tolerated(0.14) benign(0.009) TCGA-EE-A2MU-06 1 196395070 196395070 G A KCNT2 Nonsense_Mutation p.R345* 0.27 TCGA-EE-A2MU-06 1 197313472 197313472 T G CRB1 Silent p.T238T 0.14 TCGA-EE-A2MU-06 1 200978068 200978068 C T KIF21B Silent p.G92G 0.14 TCGA-EE-A2MU-06 1 203134932 203134932 C T ADORA1 Silent p.F295F 0.15 TCGA-EE-A2MU-06 1 204396825 204396825 G A PIK3C2B Missense_Mutation p.S1513F 0.24 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A2MU-06 1 204588034 204588034 C T LRRN2 Missense_Mutation p.E363K 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 1 205138441 205138441 C A DSTYK Nonsense_Mutation p.E392* 0.17 TCGA-EE-A2MU-06 1 214557398 214557398 C T PTPN14 Silent p.R600R 0.16 TCGA-EE-A2MU-06 1 217856630 217856630 C T SPATA17 Missense_Mutation p.R108W 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 1 220792035 220792035 G A MARK1 Missense_Mutation p.D283N 0.17 deleterious(0.03) probably_damaging(1) TCGA-EE-A2MU-06 1 22303555 22303555 C T CELA3B Missense_Mutation p.S8F 0.25 tolerated(0.34) benign(0) TCGA-EE-A2MU-06 1 22902822 22902822 G A EPHA8 Missense_Mutation p.R91Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 1 22987512 22987512 T A C1QB Missense_Mutation p.V132D 0.10 tolerated(0.22) benign(0.013) TCGA-EE-A2MU-06 1 233231501 233231501 G A PCNXL2 Missense_Mutation p.H1316Y 0.44 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A2MU-06 1 240370352 240370352 C T FMN2 Missense_Mutation p.S747F 0.19 unknown(0) TCGA-EE-A2MU-06 1 242383350 242383350 G A PLD5 Silent p.I225I 0.19 TCGA-EE-A2MU-06 1 24388476 24388476 C T MYOM3 Silent p.G1298G 0.14 TCGA-EE-A2MU-06 1 247695611 247695611 G A OR2C3 Missense_Mutation p.P68L 0.13 deleterious(0) benign(0) TCGA-EE-A2MU-06 1 247921301 247921301 C T OR1C1 Missense_Mutation p.M136I 0.15 deleterious(0.03) benign(0.006) TCGA-EE-A2MU-06 1 248262733 248262733 C T OR2L13 Missense_Mutation p.P19L 0.19 tolerated(0.51) benign(0.002) TCGA-EE-A2MU-06 1 248402762 248402762 T G OR2M4 Missense_Mutation p.F178V 0.11 deleterious(0) probably_damaging(0.982) TCGA-EE-A2MU-06 1 248458608 248458608 G A OR2T12 Silent p.S91S 0.07 TCGA-EE-A2MU-06 1 248616379 248616379 C T OR2T2 Missense_Mutation p.S94F 0.04 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MU-06 1 248790161 248790161 G A OR2T11 Missense_Mutation p.S90F 0.13 deleterious(0.01) benign(0.008) TCGA-EE-A2MU-06 1 249119076 249119076 G A SH3BP5L Missense_Mutation p.P20L 0.27 tolerated_low_confidence(0.32) benign(0.012) TCGA-EE-A2MU-06 1 2522366 2522366 C T FAM213B 3'UTR 0.33 TCGA-EE-A2MU-06 1 26090398 26090398 G A MAN1C1 Missense_Mutation p.E361K 0.25 tolerated(0.06) benign(0.013) TCGA-EE-A2MU-06 1 26142251 26142251 G A SEPN1 3'UTR 0.30 TCGA-EE-A2MU-06 1 26514782 26514782 C T CNKSR1 Silent p.P504P 0.10 TCGA-EE-A2MU-06 1 27673962 27673962 G A SYTL1 Missense_Mutation p.G81E 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 1 28477268 28477268 G A PTAFR Silent p.L89L 0.18 TCGA-EE-A2MU-06 1 32256610 32256610 C T SPOCD1 Missense_Mutation p.G1082E 0.27 tolerated(0.15) benign(0.178) TCGA-EE-A2MU-06 1 34112404 34112404 G A CSMD2 Missense_Mutation p.H1500Y 0.21 tolerated(0.33) probably_damaging(0.998) TCGA-EE-A2MU-06 1 34158602 34158602 C T CSMD2 Missense_Mutation p.G1287E 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 1 35334585 35334585 G A DLGAP3 Silent p.A702A 0.43 TCGA-EE-A2MU-06 1 36348967 36348967 C T AGO1 5'UTR 0.34 TCGA-EE-A2MU-06 1 38197142 38197142 C T EPHA10 Missense_Mutation p.G535E 0.07 deleterious(0.02) possibly_damaging(0.853) TCGA-EE-A2MU-06 1 42046639 42046639 G A HIVEP3 Missense_Mutation p.P1277L 0.15 benign(0.075) TCGA-EE-A2MU-06 1 43905375 43905375 G A SZT2 Missense_Mutation p.R2269Q 0.11 tolerated(1) benign(0) TCGA-EE-A2MU-06 1 44463570 44463570 G A SLC6A9 Missense_Mutation p.A628V 0.19 tolerated(0.33) benign(0.422) TCGA-EE-A2MU-06 1 45101683 45101683 C T RNF220 Intron 0.23 TCGA-EE-A2MU-06 1 46056914 46056914 C G NASP Missense_Mutation p.P27A 0.19 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-EE-A2MU-06 1 47181973 47181973 G A EFCAB14 Nonsense_Mutation p.R110* 0.16 TCGA-EE-A2MU-06 1 53608193 53608193 C T SLC1A7 5'UTR 0.42 TCGA-EE-A2MU-06 1 55167774 55167774 C T MROH7 Silent p.V1099V 0.16 TCGA-EE-A2MU-06 1 55175713 55175713 C T MROH7 Silent p.S1275S 0.10 TCGA-EE-A2MU-06 1 57171786 57171786 C T PRKAA2 Missense_Mutation p.R439C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 1 57491658 57491658 G A DAB1 Missense_Mutation p.P261L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 1 6194187 6194187 C T CHD5 Splice_Site p.X1048_splice 0.15 TCGA-EE-A2MU-06 1 65849957 65849957 C T DNAJC6 Nonsense_Mutation p.R250* 0.22 TCGA-EE-A2MU-06 1 70460279 70460279 G A LRRC7 Missense_Mutation p.D285N 0.11 tolerated(0.08) probably_damaging(0.985) TCGA-EE-A2MU-06 1 70504702 70504702 C T LRRC7 Silent p.V1027V 0.19 TCGA-EE-A2MU-06 1 74492602 74492602 C T LRRIQ3 Missense_Mutation p.M590I 0.11 tolerated(0.13) benign(0.01) TCGA-EE-A2MU-06 1 9019055 9019055 C T CA6 Silent p.F165F 0.11 TCGA-EE-A2MU-06 1 92573483 92573483 T A BTBD8 Nonsense_Mutation p.L196* 0.13 TCGA-EE-A2MU-06 1 94697070 94697070 G A ARHGAP29 Missense_Mutation p.S33F 0.15 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A2MU-06 1 983023 983023 C T AGRN Missense_Mutation p.P1196L 0.19 deleterious(0) probably_damaging(0.977) TCGA-EE-A2MU-06 1 99164351 99164351 G A SNX7 Missense_Mutation p.A310T 0.29 deleterious(0) benign(0.35) TCGA-EE-A2MU-06 1 99164352 99164352 C A SNX7 Missense_Mutation p.A310D 0.30 deleterious(0.05) possibly_damaging(0.471) TCGA-EE-A2MU-06 20 10035229 10035229 C T ANKEF1 Silent p.I718I 0.08 TCGA-EE-A2MU-06 20 10036195 10036195 G A ANKEF1 Missense_Mutation p.E740K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A2MU-06 20 126365 126365 C T DEFB126 3'UTR 0.16 TCGA-EE-A2MU-06 20 19665960 19665960 G A SLC24A3 Missense_Mutation p.D427N 0.23 tolerated(0.26) benign(0.063) TCGA-EE-A2MU-06 20 20168671 20168671 G C C20orf26 Missense_Mutation p.D495H 0.09 deleterious(0.04) benign(0.233) TCGA-EE-A2MU-06 20 30432705 30432705 G A FOXS1 Missense_Mutation p.S214L 0.15 tolerated(0.06) benign(0.051) TCGA-EE-A2MU-06 20 31877752 31877752 G A BPIFB1 Missense_Mutation p.E107K 0.24 deleterious(0.02) possibly_damaging(0.661) TCGA-EE-A2MU-06 20 33879675 33879675 G A FAM83C Nonsense_Mutation p.Q145* 0.16 TCGA-EE-A2MU-06 20 36789988 36789988 C T TGM2 Silent p.E8E 0.23 TCGA-EE-A2MU-06 20 36859609 36859609 G A KIAA1755 Silent p.I622I 0.31 TCGA-EE-A2MU-06 20 40053932 40053932 T C CHD6 Missense_Mutation p.K1411R 0.11 tolerated(0.67) benign(0.054) TCGA-EE-A2MU-06 20 40714415 40714415 C T PTPRT Missense_Mutation p.D1309N 0.08 deleterious(0) possibly_damaging(0.794) TCGA-EE-A2MU-06 20 40733322 40733322 C T PTPRT Missense_Mutation p.A1143T 0.19 deleterious(0) probably_damaging(0.947) TCGA-EE-A2MU-06 20 40743942 40743942 C T PTPRT Missense_Mutation p.R999Q 0.22 tolerated(0.2) possibly_damaging(0.896) TCGA-EE-A2MU-06 20 44416617 44416617 C T WFDC3 Silent p.R72R 0.21 TCGA-EE-A2MU-06 20 44699170 44699170 G A NCOA5 Missense_Mutation p.P15L 0.13 tolerated_low_confidence(0.32) unknown(0) TCGA-EE-A2MU-06 20 44699171 44699171 G A NCOA5 Missense_Mutation p.P15S 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A2MU-06 20 45853154 45853154 G A ZMYND8 Silent p.I978I 0.24 TCGA-EE-A2MU-06 20 47843021 47843021 C T DDX27 Missense_Mutation p.P250S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 20 49626318 49626318 G T KCNG1 Missense_Mutation p.D186E 0.22 tolerated(1) benign(0) TCGA-EE-A2MU-06 20 51870136 51870136 G A TSHZ2 Missense_Mutation p.D47N 0.13 tolerated(0.3) benign(0.297) TCGA-EE-A2MU-06 20 55100852 55100852 C T FAM209A Intron 0.07 TCGA-EE-A2MU-06 20 57769657 57769657 C T ZNF831 Missense_Mutation p.P1195S 0.15 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A2MU-06 20 57769658 57769658 C T ZNF831 Missense_Mutation p.P1195L 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MU-06 20 61982010 61982010 G A CHRNA4 Silent p.I251I 0.09 TCGA-EE-A2MU-06 20 62374346 62374346 C T SLC2A4RG 3'UTR 0.16 TCGA-EE-A2MU-06 20 62724142 62724142 C T OPRL1 Silent p.S23S 0.26 TCGA-EE-A2MU-06 20 861925 861925 G A ANGPT4 Silent p.F280F 0.21 TCGA-EE-A2MU-06 20 9360769 9360769 C T PLCB4 Silent p.I271I 0.18 TCGA-EE-A2MU-06 20 9364892 9364892 G A PLCB4 Missense_Mutation p.E300K 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 20 9520187 9520187 G A PAK7 Silent p.L694L 0.17 TCGA-EE-A2MU-06 20 9624876 9624876 C T PAK7 Missense_Mutation p.G34D 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 21 31768587 31768587 G A KRTAP13-1 Nonsense_Mutation p.W61* 0.12 TCGA-EE-A2MU-06 21 33951009 33951009 G A TCP10L Missense_Mutation p.P165S 0.15 tolerated(0.58) benign(0.006) TCGA-EE-A2MU-06 21 35258600 35258600 A G ITSN1 Missense_Mutation p.N1618S 0.17 deleterious(0.02) possibly_damaging(0.902) TCGA-EE-A2MU-06 21 38098503 38098503 G A SIM2 Silent p.G209G 0.08 TCGA-EE-A2MU-06 21 42080488 42080488 G A DSCAM Missense_Mutation p.P85S 0.13 tolerated(0.08) benign(0.088) TCGA-EE-A2MU-06 22 17072290 17072290 C T CCT8L2 Missense_Mutation p.G384E 0.16 deleterious(0.03) probably_damaging(0.94) TCGA-EE-A2MU-06 22 17288747 17288747 A C XKR3 Missense_Mutation p.F73V 0.15 deleterious(0) benign(0.022) TCGA-EE-A2MU-06 22 22868490 22868490 C T ZNF280A Missense_Mutation p.E489K 0.09 tolerated(0.15) benign(0.283) TCGA-EE-A2MU-06 22 26294333 26294333 G A MYO18B Silent p.R1576R 0.16 TCGA-EE-A2MU-06 22 29924434 29924434 G A THOC5 Missense_Mutation p.A316V 0.29 tolerated(0.16) probably_damaging(0.918) TCGA-EE-A2MU-06 22 36538042 36538042 C T APOL3 Missense_Mutation p.E139K 0.20 tolerated(0.94) benign(0) TCGA-EE-A2MU-06 22 37322096 37322096 C T CSF2RB Missense_Mutation p.R90C 0.13 deleterious(0.04) benign(0.312) TCGA-EE-A2MU-06 22 41368538 41368538 A G RBX1 3'UTR 0.21 TCGA-EE-A2MU-06 22 42273334 42273334 C T SREBF2 Silent p.P496P 0.11 TCGA-EE-A2MU-06 22 47062751 47062751 C T GRAMD4 Missense_Mutation p.P280L 0.08 deleterious(0.01) benign(0.365) TCGA-EE-A2MU-06 22 50537973 50537973 G A MOV10L1 Silent p.V128V 0.14 TCGA-EE-A2MU-06 2 107449069 107449069 G A ST6GAL2 Silent p.V365V 0.07 TCGA-EE-A2MU-06 2 108614294 108614294 G A SLC5A7 Missense_Mutation p.G150E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 2 111562933 111562933 G A ACOXL Silent p.S238S 0.07 TCGA-EE-A2MU-06 2 113950850 113950850 C T PSD4 Silent p.A645A 0.08 TCGA-EE-A2MU-06 2 11922584 11922584 C T LPIN1 Silent p.A454A 0.25 TCGA-EE-A2MU-06 2 121742241 121742241 G A GLI2 Silent p.E626E 0.15 TCGA-EE-A2MU-06 2 125521687 125521687 T G CNTNAP5 Missense_Mutation p.N831K 0.08 deleterious(0) possibly_damaging(0.864) TCGA-EE-A2MU-06 2 130930247 130930247 G A SMPD4 Missense_Mutation p.P192L 0.24 deleterious(0.01) benign(0.007) TCGA-EE-A2MU-06 2 135883819 135883819 C T RAB3GAP1 Missense_Mutation p.S300F 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MU-06 2 136594497 136594497 G A LCT Silent p.A81A 0.22 TCGA-EE-A2MU-06 2 136594498 136594498 G A LCT Missense_Mutation p.A81V 0.22 tolerated(0.09) benign(0.035) TCGA-EE-A2MU-06 2 138330046 138330046 C T THSD7B Missense_Mutation p.P1118S 0.15 tolerated(0.73) unknown(0) TCGA-EE-A2MU-06 2 141819819 141819819 C T LRP1B Missense_Mutation p.G346E 0.24 probably_damaging(0.931) TCGA-EE-A2MU-06 2 149864535 149864535 C T KIF5C Missense_Mutation p.S835F 0.13 deleterious(0.02) benign(0.031) TCGA-EE-A2MU-06 2 152425865 152425865 C T NEB Missense_Mutation p.E5818K 0.23 probably_damaging(0.994) TCGA-EE-A2MU-06 2 152499715 152499715 C T NEB Missense_Mutation p.M2703I 0.29 benign(0.003) TCGA-EE-A2MU-06 2 155711698 155711698 C T KCNJ3 Missense_Mutation p.S460F 0.11 tolerated_low_confidence(0.3) benign(0.002) TCGA-EE-A2MU-06 2 158390376 158390376 G A ACVR1C 3'UTR 0.27 TCGA-EE-A2MU-06 2 159035451 159035451 G A CCDC148 Silent p.A476A 0.24 TCGA-EE-A2MU-06 2 166892769 166892769 A C SCN1A Missense_Mutation p.L1073R 0.14 tolerated(0.37) benign(0.013) TCGA-EE-A2MU-06 2 166909411 166909411 C T SCN1A Silent p.L215L 0.23 TCGA-EE-A2MU-06 2 167056335 167056335 G A SCN9A Missense_Mutation p.S1594F 0.07 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MU-06 2 167162325 167162325 C T SCN9A Silent p.L191L 0.27 TCGA-EE-A2MU-06 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.22 tolerated(0.08) benign(0.007) TCGA-EE-A2MU-06 2 16740730 16740730 C T FAM49A Missense_Mutation p.D279N 0.06 tolerated(0.23) benign(0.073) TCGA-EE-A2MU-06 2 169870007 169870007 G A ABCB11 Missense_Mutation p.S55L 0.14 deleterious(0.01) benign(0.284) TCGA-EE-A2MU-06 2 175006601 175006601 T C OLA1 Silent p.L167L 0.21 TCGA-EE-A2MU-06 2 179455277 179455277 C T TTN Nonsense_Mutation p.W20392* 0.22 TCGA-EE-A2MU-06 2 179576075 179576075 C T TTN Silent p.E9296E 0.09 TCGA-EE-A2MU-06 2 179590258 179590258 C T TTN Silent p.K6891K 0.09 TCGA-EE-A2MU-06 2 179622509 179622509 C T TTN Missense_Mutation p.E3480K 0.06 TCGA-EE-A2MU-06 2 179634647 179634647 G A TTN Silent p.T2887T 0.13 TCGA-EE-A2MU-06 2 18113616 18113616 G T KCNS3 Silent p.R447R 0.09 TCGA-EE-A2MU-06 2 182374525 182374525 G A ITGA4 Missense_Mutation p.M612I 0.13 tolerated(1) benign(0) TCGA-EE-A2MU-06 2 182396419 182396419 C T ITGA4 Silent p.F900F 0.17 TCGA-EE-A2MU-06 2 189927950 189927950 C T COL5A2 Missense_Mutation p.G606E 0.17 probably_damaging(1) TCGA-EE-A2MU-06 2 196681503 196681503 G A DNAH7 Missense_Mutation p.R3204C 0.16 deleterious(0.02) benign(0.003) TCGA-EE-A2MU-06 2 196681677 196681677 C T DNAH7 Missense_Mutation p.E3146K 0.22 deleterious(0.01) possibly_damaging(0.58) TCGA-EE-A2MU-06 2 196759829 196759829 G A DNAH7 Silent p.S1589S 0.14 TCGA-EE-A2MU-06 2 198949102 198949102 C T PLCL1 Silent p.I287I 0.29 TCGA-EE-A2MU-06 2 202082566 202082566 G A CASP10 3'UTR 0.38 TCGA-EE-A2MU-06 2 203948235 203948235 G T NBEAL1 Missense_Mutation p.Q326H 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A2MU-06 2 207172139 207172139 C T ZDBF2 Missense_Mutation p.P963S 0.10 tolerated(0.2) benign(0.002) TCGA-EE-A2MU-06 2 207833919 207833919 G A CPO Missense_Mutation p.R295K 0.23 tolerated(0.34) benign(0.068) TCGA-EE-A2MU-06 2 20838131 20838131 G A HS1BP3 Intron 0.27 TCGA-EE-A2MU-06 2 211540556 211540556 C T CPS1 Silent p.S1428S 0.11 TCGA-EE-A2MU-06 2 212286791 212286791 C T ERBB4 Missense_Mutation p.E969K 0.30 deleterious(0.02) possibly_damaging(0.767) TCGA-EE-A2MU-06 2 216908654 216908654 G A PECR Missense_Mutation p.L267F 0.13 tolerated(0.06) benign(0.126) TCGA-EE-A2MU-06 2 217142513 217142513 G A MARCH4 Silent p.I249I 0.09 TCGA-EE-A2MU-06 2 222428586 222428586 G A EPHA4 Nonsense_Mutation p.R230* 0.11 TCGA-EE-A2MU-06 2 227945193 227945193 C T COL4A4 Missense_Mutation p.G590E 0.19 probably_damaging(0.972) TCGA-EE-A2MU-06 2 228846335 228846335 G A SPHKAP 3'UTR 0.20 TCGA-EE-A2MU-06 2 228886639 228886639 C T SPHKAP Missense_Mutation p.G162E 0.19 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MU-06 2 230910957 230910957 C T SLC16A14 Silent p.K295K 0.18 TCGA-EE-A2MU-06 2 238253035 238253035 G A COL6A3 Silent p.F2542F 0.14 TCGA-EE-A2MU-06 2 240985478 240985478 C T OR6B3 Silent p.E4E 0.12 TCGA-EE-A2MU-06 2 27500810 27500810 G A DNAJC5G Missense_Mutation p.G101E 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A2MU-06 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.10 TCGA-EE-A2MU-06 2 31600013 31600013 C T XDH Missense_Mutation p.G445R 0.14 deleterious(0.04) benign(0.03) TCGA-EE-A2MU-06 2 32476179 32476179 C T NLRC4 Missense_Mutation p.E252K 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 2 33500900 33500900 G A LTBP1 Missense_Mutation p.G968R 0.11 tolerated(0.52) benign(0.049) TCGA-EE-A2MU-06 2 39053684 39053684 G A DHX57 Silent p.I929I 0.18 TCGA-EE-A2MU-06 2 43726031 43726031 G A THADA Missense_Mutation p.P1229S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 2 43919744 43919744 C T PLEKHH2 Missense_Mutation p.S93L 0.14 tolerated(0.11) benign(0.003) TCGA-EE-A2MU-06 2 48950671 48950671 C T LHCGR Missense_Mutation p.E154K 0.61 deleterious(0) probably_damaging(0.983) TCGA-EE-A2MU-06 2 60687932 60687932 C T BCL11A Silent p.E705E 0.43 TCGA-EE-A2MU-06 2 61575559 61575559 A C USP34 Missense_Mutation p.S577R 0.09 tolerated_low_confidence(0.15) probably_damaging(0.962) TCGA-EE-A2MU-06 2 66796313 66796313 C T MEIS1 Intron 0.20 TCGA-EE-A2MU-06 2 69092896 69092896 G A BMP10 Missense_Mutation p.S381F 0.39 deleterious(0) possibly_damaging(0.86) TCGA-EE-A2MU-06 2 71894600 71894600 G A DYSF Silent p.V1804V 0.42 TCGA-EE-A2MU-06 2 71896829 71896829 C T DYSF Missense_Mutation p.P1913S 0.40 deleterious(0.02) probably_damaging(0.944) TCGA-EE-A2MU-06 2 73680578 73680578 C A ALMS1 Silent p.S2307S 0.35 TCGA-EE-A2MU-06 2 89185514 89185514 C T IGKV4-1 Missense_Mutation p.P70S 0.64 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A2MU-06 2 90044208 90044208 C T IGKV2D-24 Silent p.F43F 0.62 TCGA-EE-A2MU-06 2 90060446 90060446 G T IGKV6D-21 Translation_Start_Site p.M1? 0.26 tolerated(0.6) benign(0.001) TCGA-EE-A2MU-06 2 90077815 90077815 C G IGKV3D-20 Silent p.L13L 0.19 TCGA-EE-A2MU-06 2 98797639 98797639 A C VWA3B Missense_Mutation p.K425N 0.11 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A2MU-06 3 100595387 100595387 C T ABI3BP Silent p.R245R 0.12 TCGA-EE-A2MU-06 3 100595388 100595388 C T ABI3BP Missense_Mutation p.R245K 0.11 tolerated(0.7) benign(0) TCGA-EE-A2MU-06 3 102187820 102187820 C T ZPLD1 Silent p.D274D 0.24 TCGA-EE-A2MU-06 3 112548169 112548169 C T CD200R1L Missense_Mutation p.E37K 0.21 tolerated(0.1) benign(0.052) TCGA-EE-A2MU-06 3 11302238 11302238 G A HRH1 3'UTR 0.13 TCGA-EE-A2MU-06 3 114070395 114070395 G A ZBTB20 Missense_Mutation p.A177V 0.16 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A2MU-06 3 120352073 120352073 G A HGD Missense_Mutation p.P370L 0.16 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MU-06 3 121659917 121659917 C T SLC15A2 3'UTR 0.21 TCGA-EE-A2MU-06 3 123428636 123428636 C T MYLK Missense_Mutation p.G637R 0.26 deleterious(0) benign(0.227) TCGA-EE-A2MU-06 3 124739810 124739810 G A HEG1 Missense_Mutation p.P360S 0.12 tolerated(0.18) benign(0.054) TCGA-EE-A2MU-06 3 125856685 125856685 C T ALDH1L1 Missense_Mutation p.D409N 0.23 tolerated_low_confidence(0.05) benign(0.009) TCGA-EE-A2MU-06 3 129547218 129547218 C T TMCC1 Missense_Mutation p.E2K 0.31 deleterious_low_confidence(0.02) benign(0.142) TCGA-EE-A2MU-06 3 129547219 129547219 C T TMCC1 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-EE-A2MU-06 3 130300724 130300724 G A COL6A6 Silent p.Q1289Q 0.15 TCGA-EE-A2MU-06 3 133329853 133329853 C A TOPBP1 Missense_Mutation p.V1390F 0.07 deleterious(0.02) benign(0.076) TCGA-EE-A2MU-06 3 13401897 13401897 G A NUP210 Missense_Mutation p.S676F 0.18 deleterious(0) probably_damaging(0.928) TCGA-EE-A2MU-06 3 148792049 148792049 G A HLTF Missense_Mutation p.S161L 0.26 tolerated(1) benign(0) TCGA-EE-A2MU-06 3 149093295 149093295 T C TM4SF1 Silent p.A116A 0.31 TCGA-EE-A2MU-06 3 15529735 15529735 G A COLQ Missense_Mutation p.S100F 0.21 tolerated(0.16) unknown(0) TCGA-EE-A2MU-06 3 156170718 156170718 C T KCNAB1 Missense_Mutation p.S117L 0.12 deleterious(0.05) possibly_damaging(0.904) TCGA-EE-A2MU-06 3 156745976 156745976 C T LEKR1 Missense_Mutation p.R485W 0.12 deleterious(0) benign(0.13) TCGA-EE-A2MU-06 3 160803699 160803699 G A B3GALNT1 Missense_Mutation p.H282Y 0.31 tolerated(1) benign(0.013) TCGA-EE-A2MU-06 3 167031881 167031881 T G ZBBX Missense_Mutation p.K433T 0.19 deleterious(0.02) possibly_damaging(0.787) TCGA-EE-A2MU-06 3 167196724 167196724 C T WDR49 Missense_Mutation p.R679Q 0.24 tolerated(0.38) benign(0.015) TCGA-EE-A2MU-06 3 168810796 168810796 G A MECOM Silent p.F915F 0.23 TCGA-EE-A2MU-06 3 172353837 172353837 G A NCEH1 Missense_Mutation p.H200Y 0.20 tolerated(0.54) benign(0.001) TCGA-EE-A2MU-06 3 178546140 178546140 G A KCNMB2 Silent p.E134E 0.24 TCGA-EE-A2MU-06 3 186938832 186938832 C T MASP1 Missense_Mutation p.E634K 0.27 tolerated(0.26) benign(0.177) TCGA-EE-A2MU-06 3 193032768 193032768 C T ATP13A5 Missense_Mutation p.M717I 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 3 193036884 193036884 G A ATP13A5 Silent p.F643F 0.27 TCGA-EE-A2MU-06 3 195453126 195453126 C T MUC20 Missense_Mutation p.P551L 0.15 tolerated(0.38) unknown(0) TCGA-EE-A2MU-06 3 196509504 196509504 C T PAK2 5'UTR 0.13 TCGA-EE-A2MU-06 3 19959793 19959793 C T EFHB Missense_Mutation p.D370N 0.25 tolerated(0.06) benign(0.284) TCGA-EE-A2MU-06 3 36873885 36873885 C T TRANK1 Missense_Mutation p.E2353K 0.26 tolerated(0.17) benign(0.097) TCGA-EE-A2MU-06 3 36873917 36873917 T G TRANK1 Missense_Mutation p.K2342T 0.25 deleterious(0.02) probably_damaging(0.917) TCGA-EE-A2MU-06 3 36898891 36898891 C T TRANK1 Silent p.P730P 0.31 TCGA-EE-A2MU-06 3 36899257 36899257 G T TRANK1 Missense_Mutation p.N608K 0.14 tolerated(0.24) benign(0.05) TCGA-EE-A2MU-06 3 38938483 38938483 C T SCN11A Silent p.G752G 0.22 TCGA-EE-A2MU-06 3 42573337 42573337 G A VIPR1 Silent p.K298K 0.29 TCGA-EE-A2MU-06 3 45134810 45134810 G A CDCP1 Missense_Mutation p.S529F 0.27 tolerated(0.71) benign(0.01) TCGA-EE-A2MU-06 3 45636773 45636773 C T LIMD1 Silent p.S134S 0.12 TCGA-EE-A2MU-06 3 46415077 46415077 G A CCR5 Silent p.K228K 0.10 TCGA-EE-A2MU-06 3 47859547 47859547 C T DHX30 Missense_Mutation p.P22S 0.06 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A2MU-06 3 48965197 48965197 C T ARIH2 Missense_Mutation p.S69F 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A2MU-06 3 49689107 49689107 A G BSN Silent p.E706E 0.15 TCGA-EE-A2MU-06 3 49695059 49695059 C T BSN Silent p.I2690I 0.17 TCGA-EE-A2MU-06 3 50005945 50005945 C T RBM6 Missense_Mutation p.P363S 0.09 deleterious(0.03) benign(0.029) TCGA-EE-A2MU-06 3 54604085 54604085 C A CACNA2D3 Missense_Mutation p.S281Y 0.11 deleterious(0) possibly_damaging(0.687) TCGA-EE-A2MU-06 3 57233859 57233859 C T HESX1 Missense_Mutation p.D30N 0.11 tolerated(0.12) possibly_damaging(0.821) TCGA-EE-A2MU-06 3 57893673 57893673 G A SLMAP Missense_Mutation p.E488K 0.45 deleterious_low_confidence(0) possibly_damaging(0.492) TCGA-EE-A2MU-06 3 58154354 58154354 C T FLNB Silent p.I2493I 0.10 TCGA-EE-A2MU-06 3 59737982 59737982 T G FHIT Missense_Mutation p.E138D 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 3 64133290 64133290 G A PRICKLE2 Silent p.L292L 0.30 TCGA-EE-A2MU-06 3 65365122 65365122 A T MAGI1 Missense_Mutation p.S937T 0.20 tolerated(0.12) possibly_damaging(0.82) TCGA-EE-A2MU-06 3 68782291 68782291 C T FAM19A4 3'UTR 0.27 TCGA-EE-A2MU-06 3 7620939 7620939 G A GRM7 Silent p.E782E 0.20 TCGA-EE-A2MU-06 3 77656953 77656953 G A ROBO2 Silent p.G1063G 0.10 TCGA-EE-A2MU-06 3 97888470 97888470 T A OR5H15 Silent p.V309V 0.42 TCGA-EE-A2MU-06 4 103822377 103822377 G A SLC9B1 Missense_Mutation p.P482L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 4 103952958 103952958 A G SLC9B2 Missense_Mutation p.V385A 0.27 deleterious(0) possibly_damaging(0.517) TCGA-EE-A2MU-06 4 110667386 110667386 C T CFI Missense_Mutation p.R474Q 0.32 tolerated(0.21) possibly_damaging(0.658) TCGA-EE-A2MU-06 4 111431408 111431408 G A ENPEP Missense_Mutation p.G401E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 4 115769495 115769495 C T NDST4 Splice_Site p.X606_splice 0.21 TCGA-EE-A2MU-06 4 119631359 119631359 C T METTL14 Missense_Mutation p.R425C 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A2MU-06 4 141555210 141555210 G A TBC1D9 Missense_Mutation p.P880S 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A2MU-06 4 155155827 155155827 G A DCHS2 Missense_Mutation p.P2871L 0.11 deleterious(0.03) benign(0.266) TCGA-EE-A2MU-06 4 158224909 158224909 G A GRIA2 Nonsense_Mutation p.W145* 0.15 TCGA-EE-A2MU-06 4 159092232 159092232 C T FAM198B Missense_Mutation p.G99E 0.14 tolerated(0.12) benign(0.001) TCGA-EE-A2MU-06 4 159092233 159092233 C T FAM198B Missense_Mutation p.G99R 0.14 deleterious(0.05) benign(0.057) TCGA-EE-A2MU-06 4 166999147 166999147 G A TLL1 Missense_Mutation p.E803K 0.10 tolerated(0.36) benign(0.005) TCGA-EE-A2MU-06 4 16760876 16760876 T G LDB2 Missense_Mutation p.D47A 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A2MU-06 4 169341442 169341442 T G DDX60L Missense_Mutation p.R828S 0.15 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A2MU-06 4 1729699 1729699 C T TACC3 Silent p.S190S 0.18 TCGA-EE-A2MU-06 4 175184102 175184102 G A FBXO8 Nonsense_Mutation p.Q48* 0.15 TCGA-EE-A2MU-06 4 177094490 177094490 C T WDR17 Missense_Mutation p.T1145I 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A2MU-06 4 187173248 187173248 C T KLKB1 Silent p.L408L 0.09 TCGA-EE-A2MU-06 4 189012522 189012522 G A TRIML2 3'UTR 0.19 TCGA-EE-A2MU-06 4 23825971 23825971 G A PPARGC1A Missense_Mutation p.P270L 0.10 tolerated(0.14) possibly_damaging(0.704) TCGA-EE-A2MU-06 4 24543549 24543549 G A DHX15 Missense_Mutation p.P478S 0.26 deleterious(0.02) possibly_damaging(0.494) TCGA-EE-A2MU-06 4 3134345 3134345 C T HTT Nonsense_Mutation p.R765* 0.23 TCGA-EE-A2MU-06 4 40108641 40108641 C T N4BP2 Missense_Mutation p.R499C 0.19 deleterious(0.04) probably_damaging(0.984) TCGA-EE-A2MU-06 4 46099293 46099293 G A GABRG1 Missense_Mutation p.H60Y 0.18 tolerated(0.96) benign(0.006) TCGA-EE-A2MU-06 4 48143371 48143371 C T TEC Splice_Site p.X512_splice 0.24 TCGA-EE-A2MU-06 4 48566105 48566105 G A FRYL Silent p.G1152G 0.10 TCGA-EE-A2MU-06 4 52860739 52860739 C T LRRC66 Missense_Mutation p.E817K 0.15 deleterious(0.04) benign(0.05) TCGA-EE-A2MU-06 4 57389936 57389936 A G ARL9 Missense_Mutation p.K89R 0.21 tolerated(0.15) possibly_damaging(0.744) TCGA-EE-A2MU-06 4 5966754 5966754 C T C4orf50 Silent p.L666L 0.09 TCGA-EE-A2MU-06 4 76943918 76943918 T C CXCL10 Silent p.Q38Q 0.22 TCGA-EE-A2MU-06 4 80327831 80327831 C T GK2 Missense_Mutation p.M508I 0.26 deleterious(0.05) benign(0.001) TCGA-EE-A2MU-06 4 8304223 8304223 G A HTRA3 Missense_Mutation p.R362Q 0.15 deleterious(0) possibly_damaging(0.895) TCGA-EE-A2MU-06 4 84367225 84367225 A C HELQ Silent p.G469G 0.08 TCGA-EE-A2MU-06 4 90856667 90856667 G A MMRN1 Silent p.E612E 0.33 TCGA-EE-A2MU-06 5 101834427 101834427 G A SLCO6A1 Missense_Mutation p.S41F 0.33 deleterious(0.04) possibly_damaging(0.496) TCGA-EE-A2MU-06 5 102469317 102469317 C T PPIP5K2 Missense_Mutation p.P92L 0.40 deleterious(0) probably_damaging(0.995) TCGA-EE-A2MU-06 5 128351643 128351643 G A SLC27A6 Nonsense_Mutation p.W345* 0.33 TCGA-EE-A2MU-06 5 129019852 129019852 G A ADAMTS19 Missense_Mutation p.E896K 0.21 tolerated(0.2) probably_damaging(1) TCGA-EE-A2MU-06 5 132736636 132736636 T G FSTL4 Missense_Mutation p.K68T 0.14 tolerated(0.28) benign(0.025) TCGA-EE-A2MU-06 5 133541810 133541810 G A PPP2CA Silent p.L39L 0.29 TCGA-EE-A2MU-06 5 134696251 134696251 G A H2AFY Missense_Mutation p.T175I 0.23 tolerated(0.1) benign(0.239) TCGA-EE-A2MU-06 5 135693067 135693067 C T TRPC7 Silent p.R3R 0.32 TCGA-EE-A2MU-06 5 137426989 137426989 C T WNT8A 3'UTR 0.23 TCGA-EE-A2MU-06 5 138713965 138713965 G A SLC23A1 Missense_Mutation p.L423F 0.16 deleterious(0.05) possibly_damaging(0.569) TCGA-EE-A2MU-06 5 13913929 13913929 A C DNAH5 Missense_Mutation p.F487V 0.13 possibly_damaging(0.637) TCGA-EE-A2MU-06 5 139267057 139267057 C T NRG2 Missense_Mutation p.G247E 0.34 tolerated(0.32) benign(0.348) TCGA-EE-A2MU-06 5 140208960 140208960 G A PCDHA6 Silent p.R428R 0.24 TCGA-EE-A2MU-06 5 140255514 140255514 C T PCDHA12 Missense_Mutation p.P153S 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.733) TCGA-EE-A2MU-06 5 140482454 140482454 G A PCDHB3 Missense_Mutation p.G741S 0.31 tolerated_low_confidence(0.05) benign(0.312) TCGA-EE-A2MU-06 5 140537184 140537184 C T PCDHB17 Silent p.D536D 0.27 TCGA-EE-A2MU-06 5 140537185 140537185 C T PCDHB17 Missense_Mutation p.R537C 0.27 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-EE-A2MU-06 5 140954566 140954566 G A DIAPH1 Silent p.L537L 0.34 TCGA-EE-A2MU-06 5 145393464 145393464 C T SH3RF2 Missense_Mutation p.S300F 0.20 deleterious(0) probably_damaging(0.933) TCGA-EE-A2MU-06 5 145719426 145719426 C T POU4F3 Missense_Mutation p.P146S 0.37 tolerated(0.49) benign(0.017) TCGA-EE-A2MU-06 5 153709196 153709196 G A GALNT10 Missense_Mutation p.E156K 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 5 154393533 154393533 G A KIF4B Silent p.E38E 0.27 TCGA-EE-A2MU-06 5 156589928 156589928 C T FAM71B Missense_Mutation p.G450S 0.32 tolerated(0.13) benign(0.014) TCGA-EE-A2MU-06 5 156638340 156638340 C T ITK Missense_Mutation p.R96C 0.33 deleterious(0.02) benign(0.001) TCGA-EE-A2MU-06 5 161302609 161302609 C T GABRA1 Missense_Mutation p.P174S 0.23 deleterious(0) benign(0.078) TCGA-EE-A2MU-06 5 170232762 170232762 G A GABRP Missense_Mutation p.G195E 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A2MU-06 5 171765288 171765288 G A SH3PXD2B 3'UTR 0.62 TCGA-EE-A2MU-06 5 174868996 174868996 C T DRD1 Silent p.A369A 0.11 TCGA-EE-A2MU-06 5 176005596 176005596 C T CDHR2 Missense_Mutation p.S602F 0.26 tolerated(0.06) benign(0.078) TCGA-EE-A2MU-06 5 178359314 178359314 G A ZFP2 Missense_Mutation p.A334T 0.31 tolerated(0.27) benign(0.153) TCGA-EE-A2MU-06 5 179728600 179728600 G A GFPT2 Silent p.F671F 0.27 TCGA-EE-A2MU-06 5 40945392 40945392 G A C7 Silent p.R220R 0.35 TCGA-EE-A2MU-06 5 41061746 41061746 G A MROH2B Nonsense_Mutation p.R181* 0.15 TCGA-EE-A2MU-06 5 42718878 42718878 C T GHR Silent p.L423L 0.28 TCGA-EE-A2MU-06 5 43529889 43529889 G A PAIP1 Missense_Mutation p.P449S 0.16 tolerated(0.52) benign(0.014) TCGA-EE-A2MU-06 5 50687133 50687133 C T ISL1 Missense_Mutation p.P264L 0.33 deleterious(0) benign(0.078) TCGA-EE-A2MU-06 5 52183650 52183650 G A ITGA1 Silent p.K259K 0.13 TCGA-EE-A2MU-06 5 55204263 55204263 G A IL31RA Intron 0.21 TCGA-EE-A2MU-06 5 677984 677984 G A TPPP Silent p.A64A 0.19 TCGA-EE-A2MU-06 5 677985 677985 G A TPPP Missense_Mutation p.A64V 0.19 tolerated(0.06) benign(0.077) TCGA-EE-A2MU-06 5 79031855 79031855 G A CMYA5 Missense_Mutation p.D2423N 0.38 benign(0.002) TCGA-EE-A2MU-06 5 82815862 82815862 C T VCAN Silent p.V579V 0.44 TCGA-EE-A2MU-06 5 94275830 94275830 G A MCTP1 Silent p.L377L 0.27 TCGA-EE-A2MU-06 5 95728571 95728571 G A PCSK1 3'UTR 0.50 TCGA-EE-A2MU-06 5 95735866 95735866 C A PCSK1 Missense_Mutation p.M407I 0.18 tolerated(0.12) benign(0.119) TCGA-EE-A2MU-06 5 96248423 96248423 G A ERAP2 Missense_Mutation p.E813K 0.36 tolerated(0.92) benign(0.003) TCGA-EE-A2MU-06 6 10874463 10874463 G A GCM2 Missense_Mutation p.P429L 0.27 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A2MU-06 6 112460974 112460974 G A LAMA4 Silent p.S1030S 0.14 TCGA-EE-A2MU-06 6 123377155 123377155 C T CLVS2 Missense_Mutation p.P294S 0.16 tolerated(0.24) possibly_damaging(0.589) TCGA-EE-A2MU-06 6 128312513 128312513 C T PTPRK Missense_Mutation p.D975N 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 6 128505770 128505770 G A PTPRK Silent p.I323I 0.31 TCGA-EE-A2MU-06 6 132201143 132201143 C T ENPP1 Missense_Mutation p.P690L 0.07 deleterious(0) possibly_damaging(0.833) TCGA-EE-A2MU-06 6 132859895 132859895 C T TAAR9 Missense_Mutation p.S156F 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-EE-A2MU-06 6 13306760 13306760 C T TBC1D7 Splice_Site p.X222_splice 0.09 TCGA-EE-A2MU-06 6 133789870 133789870 G T EYA4 Splice_Site p.X324_splice 0.26 TCGA-EE-A2MU-06 6 136693712 136693712 G A MAP7 Missense_Mutation p.S290L 0.24 tolerated(0.13) benign(0.005) TCGA-EE-A2MU-06 6 139094890 139094890 C T CCDC28A Missense_Mutation p.L27F 0.32 deleterious_low_confidence(0.01) benign(0.032) TCGA-EE-A2MU-06 6 149700528 149700528 C T TAB2 Missense_Mutation p.H493Y 0.26 tolerated(0.52) benign(0.04) TCGA-EE-A2MU-06 6 155718019 155718019 G A NOX3 Missense_Mutation p.S553L 0.26 deleterious(0.01) possibly_damaging(0.743) TCGA-EE-A2MU-06 6 161007493 161007493 G A LPA Missense_Mutation p.P1373S 0.24 tolerated_low_confidence(0.15) probably_damaging(0.99) TCGA-EE-A2MU-06 6 161807882 161807882 C T PARK2 Missense_Mutation p.A371T 0.28 tolerated(0.07) benign(0.02) TCGA-EE-A2MU-06 6 168927053 168927053 A C SMOC2 Missense_Mutation p.K95T 0.12 tolerated(0.18) benign(0.108) TCGA-EE-A2MU-06 6 170852708 170852708 G A PSMB1 Silent p.I138I 0.25 TCGA-EE-A2MU-06 6 24547428 24547428 C T KIAA0319 Missense_Mutation p.G1062R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 6 26252154 26252154 C T HIST1H2BH Silent p.S92S 0.11 TCGA-EE-A2MU-06 6 2685565 2685565 G A MYLK4 Silent p.F170F 0.26 TCGA-EE-A2MU-06 6 27782846 27782846 C T HIST1H2BM Missense_Mutation p.P9S 0.08 deleterious_low_confidence(0.04) benign(0.001) TCGA-EE-A2MU-06 6 31079814 31079814 C T C6orf15 Missense_Mutation p.D108N 0.23 tolerated(0.07) benign(0.018) TCGA-EE-A2MU-06 6 32053803 32053803 G T TNXB Missense_Mutation p.Q958K 0.28 probably_damaging(0.915) TCGA-EE-A2MU-06 6 32135728 32135728 C T EGFL8 Nonsense_Mutation p.R293* 0.13 TCGA-EE-A2MU-06 6 35434023 35434023 C T FANCE Silent p.I504I 0.09 TCGA-EE-A2MU-06 6 36106539 36106539 C T MAPK13 Missense_Mutation p.P275S 0.14 tolerated(0.45) benign(0.016) TCGA-EE-A2MU-06 6 37443964 37443964 C T CMTR1 Missense_Mutation p.P700L 0.25 tolerated(0.07) benign(0.006) TCGA-EE-A2MU-06 6 37606050 37606050 C T MDGA1 Missense_Mutation p.D903N 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A2MU-06 6 37606051 37606051 C T MDGA1 Silent p.G902G 0.23 TCGA-EE-A2MU-06 6 3850489 3850489 G A FAM50B Silent p.V148V 0.15 TCGA-EE-A2MU-06 6 39267425 39267425 G A KCNK17 Silent p.I259I 0.09 TCGA-EE-A2MU-06 6 40359880 40359880 G A LRFN2 Silent p.F724F 0.42 TCGA-EE-A2MU-06 6 41743249 41743249 G A FRS3 Missense_Mutation p.A54V 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A2MU-06 6 51491840 51491840 G A PKHD1 Nonsense_Mutation p.R3914* 0.09 TCGA-EE-A2MU-06 6 54735063 54735063 C T FAM83B Missense_Mutation p.L7F 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A2MU-06 6 54805297 54805297 G A FAM83B Missense_Mutation p.D510N 0.11 tolerated(0.06) benign(0.041) TCGA-EE-A2MU-06 6 599152 599152 A T EXOC2 Missense_Mutation p.N272K 0.10 deleterious(0) probably_damaging(0.932) TCGA-EE-A2MU-06 6 599156 599156 C T EXOC2 Missense_Mutation p.R271K 0.11 deleterious(0.01) possibly_damaging(0.745) TCGA-EE-A2MU-06 6 70639420 70639420 C T COL19A1 Missense_Mutation p.P165L 0.36 deleterious(0.05) unknown(0) TCGA-EE-A2MU-06 6 73935121 73935121 C T KHDC1L Missense_Mutation p.G4E 0.52 tolerated_low_confidence(0.07) benign(0.004) TCGA-EE-A2MU-06 6 74079101 74079101 G A OOEP Silent p.D66D 0.44 TCGA-EE-A2MU-06 6 75893246 75893246 C T COL12A1 Missense_Mutation p.E471K 0.37 benign(0.43) TCGA-EE-A2MU-06 6 75898978 75898978 G A COL12A1 Missense_Mutation p.P260S 0.32 probably_damaging(1) TCGA-EE-A2MU-06 6 76063340 76063340 C T FILIP1 Missense_Mutation p.E182K 0.18 tolerated(0.17) probably_damaging(0.983) TCGA-EE-A2MU-06 6 83847360 83847360 C T DOPEY1 Missense_Mutation p.S1200F 0.30 tolerated_low_confidence(0.05) benign(0.001) TCGA-EE-A2MU-06 6 84799237 84799237 G A MRAP2 3'UTR 0.34 TCGA-EE-A2MU-06 6 90604872 90604872 G A GJA10 Missense_Mutation p.E229K 0.24 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MU-06 7 100350464 100350464 A G ZAN Silent p.K912K 0.18 TCGA-EE-A2MU-06 7 100552043 100552043 C T MUC3A Missense_Mutation p.S265F 0.08 tolerated(0.1) possibly_damaging(0.519) TCGA-EE-A2MU-06 7 100686258 100686258 C T MUC17 Missense_Mutation p.S3854L 0.19 benign(0.002) TCGA-EE-A2MU-06 7 100771851 100771851 C T SERPINE1 Silent p.P59P 0.17 TCGA-EE-A2MU-06 7 100839531 100839531 G A MOGAT3 Missense_Mutation p.R270C 0.18 tolerated(0.16) benign(0.175) TCGA-EE-A2MU-06 7 101918629 101918629 C T CUX1 Missense_Mutation p.A519V 0.27 tolerated(0.29) benign(0.028) TCGA-EE-A2MU-06 7 106508112 106508112 G A PIK3CG Missense_Mutation p.E36K 0.24 tolerated(0.27) benign(0.018) TCGA-EE-A2MU-06 7 120428845 120428845 A G TSPAN12 Missense_Mutation p.L240P 0.09 deleterious(0) probably_damaging(0.99) TCGA-EE-A2MU-06 7 127224625 127224625 C T GCC1 Silent p.A204A 0.16 TCGA-EE-A2MU-06 7 129046260 129046260 C T AHCYL2 Silent p.S416S 0.21 TCGA-EE-A2MU-06 7 131825483 131825483 G A PLXNA4 Silent p.L1771L 0.09 TCGA-EE-A2MU-06 7 132192880 132192880 C T PLXNA4 Silent p.G191G 0.11 TCGA-EE-A2MU-06 7 138968105 138968105 C T UBN2 Silent p.P818P 0.26 TCGA-EE-A2MU-06 7 140107535 140107535 A G RAB19 Missense_Mutation p.K30R 0.15 deleterious(0) probably_damaging(0.966) TCGA-EE-A2MU-06 7 141721462 141721462 C T MGAM Missense_Mutation p.S212F 0.12 deleterious(0) benign(0.345) TCGA-EE-A2MU-06 7 142008823 142008823 C T TRBV3-1 Missense_Mutation p.S99F 0.12 deleterious(0) probably_damaging(0.969) TCGA-EE-A2MU-06 7 142008824 142008824 C T TRBV3-1 Silent p.S99S 0.12 TCGA-EE-A2MU-06 7 142231779 142231779 C T TRBV10-1 Nonsense_Mutation p.W46* 0.07 TCGA-EE-A2MU-06 7 142625268 142625268 G A TRPV5 Missense_Mutation p.S275F 0.08 deleterious(0) possibly_damaging(0.781) TCGA-EE-A2MU-06 7 143632903 143632903 C T OR2F2 Missense_Mutation p.S193F 0.22 tolerated(0.27) benign(0.367) TCGA-EE-A2MU-06 7 143701836 143701836 C T OR6B1 Silent p.F249F 0.19 TCGA-EE-A2MU-06 7 143748185 143748185 G A OR2A5 Missense_Mutation p.G231R 0.20 tolerated(0.17) benign(0.021) TCGA-EE-A2MU-06 7 143748186 143748186 G A OR2A5 Missense_Mutation p.G231E 0.21 deleterious(0.04) benign(0.371) TCGA-EE-A2MU-06 7 143748223 143748223 C T OR2A5 Silent p.S243S 0.19 TCGA-EE-A2MU-06 7 144098647 144098647 C T NOBOX Silent p.E112E 0.14 TCGA-EE-A2MU-06 7 148947455 148947455 C T ZNF212 Missense_Mutation p.A77V 0.16 deleterious(0.02) possibly_damaging(0.741) TCGA-EE-A2MU-06 7 150698495 150698495 C T NOS3 Silent p.S470S 0.14 TCGA-EE-A2MU-06 7 18066664 18066664 A G PRPS1L1 Silent p.L248L 0.18 TCGA-EE-A2MU-06 7 18801793 18801793 G A HDAC9 Missense_Mutation p.R686Q 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A2MU-06 7 21747388 21747388 A C DNAH11 Missense_Mutation p.K2213N 0.15 probably_damaging(0.997) TCGA-EE-A2MU-06 7 2269665 2269665 G A MAD1L1 Missense_Mutation p.T35I 0.35 tolerated(0.13) benign(0.014) TCGA-EE-A2MU-06 7 23236306 23236306 C T NUPL2 Missense_Mutation p.S177F 0.09 deleterious(0.02) probably_damaging(0.915) TCGA-EE-A2MU-06 7 23823225 23823225 G A STK31 Silent p.Q697Q 0.15 TCGA-EE-A2MU-06 7 27149901 27149901 G A HOXA3 Missense_Mutation p.P120L 0.27 tolerated(0.08) possibly_damaging(0.726) TCGA-EE-A2MU-06 7 2959141 2959141 G A CARD11 Missense_Mutation p.T792I 0.21 deleterious(0) benign(0.013) TCGA-EE-A2MU-06 7 29983621 29983621 C T SCRN1 Silent p.G192G 0.12 TCGA-EE-A2MU-06 7 35130006 35130006 T G DPY19L2P1 RNA 0.07 TCGA-EE-A2MU-06 7 36194329 36194329 C T EEPD1 Silent p.P132P 0.18 TCGA-EE-A2MU-06 7 37780105 37780105 C T GPR141 Missense_Mutation p.S37F 0.15 tolerated(0.14) possibly_damaging(0.83) TCGA-EE-A2MU-06 7 38424484 38424484 G A AMPH Nonsense_Mutation p.Q675* 0.23 TCGA-EE-A2MU-06 7 43679065 43679065 C T COA1 3'UTR 0.28 TCGA-EE-A2MU-06 7 44561362 44561362 G A NPC1L1 Missense_Mutation p.R968C 0.09 deleterious(0.02) benign(0.246) TCGA-EE-A2MU-06 7 47840287 47840287 C T PKD1L1 Missense_Mutation p.G2718E 0.08 deleterious(0.04) possibly_damaging(0.871) TCGA-EE-A2MU-06 7 47847981 47847981 G A PKD1L1 Missense_Mutation p.S2564F 0.15 deleterious(0.04) benign(0.175) TCGA-EE-A2MU-06 7 47894637 47894637 C T PKD1L1 Missense_Mutation p.D1568N 0.24 tolerated(0.09) benign(0.132) TCGA-EE-A2MU-06 7 47898329 47898329 G A PKD1L1 Missense_Mutation p.S1435L 0.27 tolerated(0.36) benign(0.012) TCGA-EE-A2MU-06 7 50057911 50057911 A C ZPBP Silent p.V236V 0.09 TCGA-EE-A2MU-06 7 64168626 64168626 C T ZNF107 Silent p.S648S 0.24 TCGA-EE-A2MU-06 7 70886089 70886089 C T WBSCR17 Silent p.I320I 0.22 TCGA-EE-A2MU-06 7 73471735 73471735 G A ELN Intron 0.24 TCGA-EE-A2MU-06 7 7571504 7571504 G A COL28A1 Silent p.I52I 0.19 TCGA-EE-A2MU-06 7 78130895 78130895 C T MAGI2 Missense_Mutation p.D322N 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A2MU-06 7 82545510 82545510 A T PCLO Missense_Mutation p.V3931E 0.09 unknown(0) TCGA-EE-A2MU-06 7 82582033 82582033 C T PCLO Missense_Mutation p.D2746N 0.25 unknown(0) TCGA-EE-A2MU-06 7 82585034 82585034 C T PCLO Silent p.P1745P 0.06 TCGA-EE-A2MU-06 7 82585486 82585486 C T PCLO Missense_Mutation p.E1595K 0.11 unknown(0) TCGA-EE-A2MU-06 7 82585784 82585784 C T PCLO Silent p.E1495E 0.15 TCGA-EE-A2MU-06 7 82764634 82764634 C T PCLO Silent p.Q744Q 0.10 TCGA-EE-A2MU-06 7 86978460 86978460 C T CROT Missense_Mutation p.P26S 0.09 deleterious(0) possibly_damaging(0.795) TCGA-EE-A2MU-06 7 87774728 87774728 A G ADAM22 Splice_Site p.X465_splice 0.11 TCGA-EE-A2MU-06 7 89856353 89856353 C T STEAP2 Silent p.F187F 0.15 TCGA-EE-A2MU-06 7 91646386 91646386 A T AKAP9 Missense_Mutation p.K1269N 0.31 benign(0.019) TCGA-EE-A2MU-06 7 92763163 92763163 C T SAMD9L Missense_Mutation p.D708N 0.27 deleterious(0.02) benign(0.133) TCGA-EE-A2MU-06 7 94539924 94539924 G A PPP1R9A Missense_Mutation p.G167R 0.17 deleterious(0.01) possibly_damaging(0.452) TCGA-EE-A2MU-06 7 99117471 99117471 C T ZKSCAN5 Missense_Mutation p.P192L 0.19 deleterious(0) possibly_damaging(0.663) TCGA-EE-A2MU-06 7 99773357 99773357 G A GPC2 Silent p.T162T 0.22 TCGA-EE-A2MU-06 8 11188858 11188858 C T SLC35G5 Silent p.L81L 0.15 TCGA-EE-A2MU-06 8 113323258 113323258 T A CSMD3 Nonsense_Mutation p.K2612* 0.10 TCGA-EE-A2MU-06 8 125989923 125989923 C T ZNF572 Silent p.T471T 0.08 TCGA-EE-A2MU-06 8 135649738 135649738 G A ZFAT Silent p.I138I 0.14 TCGA-EE-A2MU-06 8 139277969 139277969 G A FAM135B Missense_Mutation p.H92Y 0.15 deleterious(0) benign(0.183) TCGA-EE-A2MU-06 8 143605608 143605608 C T BAI1 Silent p.L1085L 0.29 TCGA-EE-A2MU-06 8 144464776 144464776 G A RHPN1 Silent p.V656V 0.30 TCGA-EE-A2MU-06 8 22972261 22972261 C T TNFRSF10C Silent p.F86F 0.11 TCGA-EE-A2MU-06 8 24199165 24199165 G A ADAM28 Nonsense_Mutation p.W575* 0.10 TCGA-EE-A2MU-06 8 27888814 27888814 C T NUGGC Silent p.G618G 0.17 TCGA-EE-A2MU-06 8 2857554 2857554 A G CSMD1 Missense_Mutation p.F2710S 0.11 possibly_damaging(0.848) TCGA-EE-A2MU-06 8 29043814 29043814 G A KIF13B Silent p.P164P 0.20 TCGA-EE-A2MU-06 8 29927356 29927356 C T TMEM66 Missense_Mutation p.A168T 0.09 tolerated(0.64) benign(0.021) TCGA-EE-A2MU-06 8 30889602 30889602 G A PURG Missense_Mutation p.R233C 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A2MU-06 8 33416159 33416159 G A RNF122 Silent p.S52S 0.17 TCGA-EE-A2MU-06 8 36766833 36766833 G A KCNU1 Missense_Mutation p.R704Q 0.14 tolerated(0.05) probably_damaging(0.944) TCGA-EE-A2MU-06 8 38067591 38067591 C T BAG4 Silent p.V318V 0.14 TCGA-EE-A2MU-06 8 39537695 39537695 G A ADAM18 Missense_Mutation p.G591R 0.23 tolerated(0.16) probably_damaging(0.976) TCGA-EE-A2MU-06 8 39634660 39634660 C T ADAM2 Silent p.L304L 0.15 TCGA-EE-A2MU-06 8 53454998 53454998 G A FAM150A Silent p.F66F 0.12 TCGA-EE-A2MU-06 8 68992680 68992680 C T PREX2 Missense_Mutation p.L549F 0.15 deleterious(0) possibly_damaging(0.701) TCGA-EE-A2MU-06 8 73480034 73480034 C T KCNB2 Missense_Mutation p.P22L 0.13 deleterious(0) probably_damaging(0.988) TCGA-EE-A2MU-06 8 75149447 75149447 C T JPH1 3'UTR 0.14 TCGA-EE-A2MU-06 8 94722059 94722059 G A FAM92A1 Missense_Mutation p.E167K 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-EE-A2MU-06 8 94809390 94809390 C T TMEM67 Missense_Mutation p.S630F 0.19 tolerated(0.09) possibly_damaging(0.747) TCGA-EE-A2MU-06 8 9565929 9565929 T C TNKS Missense_Mutation p.L502S 0.09 tolerated(0.14) benign(0.42) TCGA-EE-A2MU-06 8 98943551 98943551 G A MATN2 Silent p.G171G 0.17 TCGA-EE-A2MU-06 8 99205236 99205236 C T NIPAL2 3'UTR 0.08 TCGA-EE-A2MU-06 9 104171026 104171026 C T ZNF189 Nonsense_Mutation p.R326* 0.10 TCGA-EE-A2MU-06 9 113170131 113170131 G A SVEP1 Silent p.F2583F 0.17 TCGA-EE-A2MU-06 9 113208295 113208295 C T SVEP1 Missense_Mutation p.D1429N 0.36 benign(0.033) TCGA-EE-A2MU-06 9 114905786 114905786 G A SUSD1 Missense_Mutation p.P164L 0.11 deleterious(0.03) probably_damaging(0.959) TCGA-EE-A2MU-06 9 117104355 117104355 G A AKNA Nonsense_Mutation p.Q1270* 0.27 TCGA-EE-A2MU-06 9 118950283 118950283 G A PAPPA Silent p.E422E 0.15 TCGA-EE-A2MU-06 9 123753496 123753496 C T C5 Missense_Mutation p.E972K 0.10 tolerated(1) benign(0) TCGA-EE-A2MU-06 9 125551886 125551886 C T OR5C1 Silent p.I225I 0.16 TCGA-EE-A2MU-06 9 130648991 130648991 G A ST6GALNAC6 Nonsense_Mutation p.Q297* 0.21 TCGA-EE-A2MU-06 9 131370322 131370322 A G SPTAN1 Silent p.E1446E 0.13 TCGA-EE-A2MU-06 9 13162746 13162746 C T MPDZ Silent p.L1101L 0.16 TCGA-EE-A2MU-06 9 131670623 131670623 C T LRRC8A Silent p.L394L 0.14 TCGA-EE-A2MU-06 9 135927459 135927459 C T GTF3C5 Missense_Mutation p.R261C 0.20 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A2MU-06 9 137593137 137593137 C T COL5A1 Silent p.I204I 0.17 TCGA-EE-A2MU-06 9 137677874 137677874 C T COL5A1 Missense_Mutation p.P876S 0.21 benign(0.035) TCGA-EE-A2MU-06 9 139635770 139635770 C T LCN10 Missense_Mutation p.G101R 0.11 tolerated(0.81) benign(0.004) TCGA-EE-A2MU-06 9 140711964 140711964 A T EHMT1 Missense_Mutation p.T1150S 0.11 tolerated(0.22) probably_damaging(0.912) TCGA-EE-A2MU-06 9 140711965 140711965 C T EHMT1 Missense_Mutation p.T1150I 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A2MU-06 9 14146711 14146711 C T NFIB Missense_Mutation p.R301Q 0.07 tolerated(0.14) benign(0.233) TCGA-EE-A2MU-06 9 21206918 21206918 C T IFNA10 Missense_Mutation p.R60Q 0.29 tolerated(0.08) benign(0.019) TCGA-EE-A2MU-06 9 21239911 21239911 C T IFNA14 Missense_Mutation p.M8I 0.18 deleterious(0) benign(0.007) TCGA-EE-A2MU-06 9 32630351 32630351 C T TAF1L Missense_Mutation p.D1743N 0.16 tolerated_low_confidence(0.05) benign(0.25) TCGA-EE-A2MU-06 9 32632084 32632084 C T TAF1L Missense_Mutation p.R1165K 0.09 tolerated(1) benign(0.002) TCGA-EE-A2MU-06 9 35819900 35819900 G A FAM221B Silent p.H280H 0.14 TCGA-EE-A2MU-06 9 35819901 35819901 T A FAM221B Missense_Mutation p.H280L 0.12 deleterious(0) probably_damaging(0.984) TCGA-EE-A2MU-06 9 43627544 43627544 G A SPATA31A6 Silent p.P381P 0.11 TCGA-EE-A2MU-06 9 71396019 71396019 C T FAM122A 3'UTR 0.18 TCGA-EE-A2MU-06 9 71628337 71628337 G A PRKACG Silent p.A224A 0.16 TCGA-EE-A2MU-06 9 77403570 77403570 C T TRPM6 Missense_Mutation p.S876N 0.18 deleterious(0) benign(0.233) TCGA-EE-A2MU-06 9 8317817 8317817 G A PTPRD 3'UTR 0.28 TCGA-EE-A2MU-06 9 84609196 84609196 G A SPATA31D1 Missense_Mutation p.E1271K 0.10 tolerated(0.31) benign(0.355) TCGA-EE-A2MU-06 9 94973055 94973055 G A IARS 3'UTR 0.11 TCGA-EE-A2MU-06 X 105449518 105449518 G A MUM1L1 Silent p.R31R 0.33 TCGA-EE-A2MU-06 X 110366397 110366397 C T PAK3 Silent p.N22N 0.18 TCGA-EE-A2MU-06 X 119048716 119048716 G A AKAP14 Missense_Mutation p.D106N 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A2MU-06 X 120181873 120181873 G A GLUD2 Missense_Mutation p.C112Y 0.38 tolerated(0.06) probably_damaging(0.99) TCGA-EE-A2MU-06 X 123654524 123654524 C T TENM1 Silent p.T1048T 0.26 TCGA-EE-A2MU-06 X 128582286 128582286 T C SMARCA1 Silent p.%3D 0.17 TCGA-EE-A2MU-06 X 135430517 135430517 C T GPR112 Missense_Mutation p.P1551L 0.18 tolerated(0.22) benign(0.003) TCGA-EE-A2MU-06 X 135469965 135469965 G A GPR112 Missense_Mutation p.E2615K 0.39 tolerated(0.24) benign(0.004) TCGA-EE-A2MU-06 X 150911672 150911672 C T CNGA2 Silent p.L233L 0.19 TCGA-EE-A2MU-06 X 152159825 152159825 C T PNMA5 Silent p.L106L 0.27 TCGA-EE-A2MU-06 X 153200957 153200957 C T RENBP Missense_Mutation p.G384R 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A2MU-06 X 153200958 153200958 C T RENBP Silent p.K383K 0.31 TCGA-EE-A2MU-06 X 17151948 17151948 C T REPS2 Missense_Mutation p.S527F 0.19 tolerated(0.13) benign(0.163) TCGA-EE-A2MU-06 X 21450848 21450848 C T CNKSR2 Missense_Mutation p.T116I 0.16 tolerated(0.08) benign(0.016) TCGA-EE-A2MU-06 X 34148949 34148949 G A FAM47A Missense_Mutation p.P483S 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A2MU-06 X 34961230 34961230 G A FAM47B Silent p.K94K 0.39 TCGA-EE-A2MU-06 X 35820810 35820810 T G MAGEB16 Missense_Mutation p.F166C 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A2MU-06 X 41206947 41206948 - G DDX3X Frame_Shift_Ins p.V657Gfs*2 0.30 TCGA-EE-A2MU-06 X 43817929 43817929 G A NDP 5'UTR 0.64 TCGA-EE-A2MU-06 X 43817930 43817930 G C NDP 5'UTR 0.60 TCGA-EE-A2MU-06 X 49113391 49113391 C T FOXP3 Missense_Mutation p.R178K 0.52 tolerated(0.23) benign(0.003) TCGA-EE-A2MU-06 X 50163469 50163469 G A DGKK RNA 0.47 TCGA-EE-A2MU-06 X 52825434 52825434 C T SPANXN5 3'UTR 0.40 TCGA-EE-A2MU-06 X 63557176 63557176 G A MTMR8 Missense_Mutation p.P358L 0.31 deleterious(0) possibly_damaging(0.887) TCGA-EE-A3AA-06 10 100143598 100143598 C T PYROXD2 Missense_Mutation p.R568Q 0.09 deleterious(0.02) benign(0.358) TCGA-EE-A3AA-06 10 104140106 104140106 C T GBF1 Missense_Mutation p.S1659F 0.12 deleterious(0.02) possibly_damaging(0.805) TCGA-EE-A3AA-06 10 1043163 1043163 C T GTPBP4 Missense_Mutation p.S159F 0.09 deleterious(0) possibly_damaging(0.779) TCGA-EE-A3AA-06 10 105815633 105815633 C T COL17A1 Missense_Mutation p.G532R 0.14 unknown(0) TCGA-EE-A3AA-06 10 115411620 115411620 G A NRAP Missense_Mutation p.T206M 0.17 deleterious(0.02) possibly_damaging(0.762) TCGA-EE-A3AA-06 10 115413812 115413812 T C NRAP Missense_Mutation p.R145G 0.12 deleterious(0.02) benign(0.359) TCGA-EE-A3AA-06 10 115963905 115963905 G A TDRD1 Missense_Mutation p.G352E 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 10 115963922 115963922 C T TDRD1 Missense_Mutation p.P358S 0.11 tolerated(0.18) probably_damaging(0.986) TCGA-EE-A3AA-06 10 116595897 116595897 C T FAM160B1 Silent p.L138L 0.10 TCGA-EE-A3AA-06 10 118357582 118357582 G A PNLIPRP1 Missense_Mutation p.G240S 0.12 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A3AA-06 10 126523103 126523103 C T FAM175B Missense_Mutation p.P271S 0.11 tolerated(0.17) benign(0.008) TCGA-EE-A3AA-06 10 126715323 126715323 G A CTBP2 Silent p.L336L 0.23 TCGA-EE-A3AA-06 10 134912202 134912202 G A GPR123 Missense_Mutation p.A64T 0.13 tolerated(0.11) benign(0.171) TCGA-EE-A3AA-06 10 14816576 14816576 G A FAM107B Silent p.A29A 0.10 TCGA-EE-A3AA-06 10 15256417 15256417 C T FAM171A1 Silent p.T390T 0.10 TCGA-EE-A3AA-06 10 15590479 15590479 C T ITGA8 Missense_Mutation p.R952Q 0.17 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A3AA-06 10 17085910 17085910 G A CUBN Missense_Mutation p.R1249C 0.19 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A3AA-06 10 22030971 22030971 C T MLLT10 3'UTR 0.25 TCGA-EE-A3AA-06 10 24762403 24762403 A C KIAA1217 Missense_Mutation p.S365R 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 10 24810719 24810719 C T KIAA1217 Missense_Mutation p.P773S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 10 24816930 24816930 G A KIAA1217 Silent p.E988E 0.18 TCGA-EE-A3AA-06 10 26589885 26589885 T A GAD2 Missense_Mutation p.L585I 0.09 tolerated(0.09) possibly_damaging(0.863) TCGA-EE-A3AA-06 10 27702994 27702994 C T PTCHD3 Silent p.S62S 0.26 TCGA-EE-A3AA-06 10 28023495 28023495 C T MKX Missense_Mutation p.G243E 0.11 tolerated(1) benign(0.009) TCGA-EE-A3AA-06 10 28229653 28229653 G A ARMC4 Missense_Mutation p.R609C 0.09 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A3AA-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.16 tolerated(0.05) possibly_damaging(0.691) TCGA-EE-A3AA-06 10 30315848 30315848 G A KIAA1462 Missense_Mutation p.P1077S 0.12 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A3AA-06 10 30317559 30317559 C T KIAA1462 Silent p.G506G 0.11 TCGA-EE-A3AA-06 10 30629251 30629251 C T MTPAP Silent p.L153L 0.08 TCGA-EE-A3AA-06 10 30749660 30749660 G A MAP3K8 Silent p.E433E 0.13 TCGA-EE-A3AA-06 10 37430974 37430974 C T ANKRD30A Silent p.I327I 0.13 TCGA-EE-A3AA-06 10 37431005 37431005 G A ANKRD30A Missense_Mutation p.E338K 0.12 tolerated(1) benign(0.292) TCGA-EE-A3AA-06 10 44871427 44871427 C T CXCL12 3'Flank 0.08 TCGA-EE-A3AA-06 10 46028622 46028622 G A MARCH8 Missense_Mutation p.S13F 0.13 deleterious_low_confidence(0.02) benign(0.129) TCGA-EE-A3AA-06 10 48426627 48426627 C T GDF10 Silent p.R460R 0.09 TCGA-EE-A3AA-06 10 49450299 49450299 A C FRMPD2 Missense_Mutation p.C158G 0.10 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A3AA-06 10 50255086 50255086 G A VSTM4 Missense_Mutation p.P260L 0.12 deleterious(0.02) possibly_damaging(0.73) TCGA-EE-A3AA-06 10 52008326 52008326 G A ASAH2 Silent p.F15F 0.08 TCGA-EE-A3AA-06 10 5436411 5436411 C T TUBAL3 Missense_Mutation p.G137D 0.15 tolerated_low_confidence(0.23) benign(0.082) TCGA-EE-A3AA-06 10 5443047 5443047 C T TUBAL3 Missense_Mutation p.E3K 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AA-06 10 55591215 55591215 G A PCDH15 Silent p.I1354I 0.09 TCGA-EE-A3AA-06 10 60558161 60558161 C T BICC1 Missense_Mutation p.L457F 0.14 tolerated(0.48) benign(0.013) TCGA-EE-A3AA-06 10 60560789 60560789 G A BICC1 Silent p.T666T 0.21 TCGA-EE-A3AA-06 10 61014160 61014160 C T FAM13C Missense_Mutation p.R427Q 0.09 deleterious(0.01) possibly_damaging(0.511) TCGA-EE-A3AA-06 10 61829367 61829367 C T ANK3 Missense_Mutation p.E3758K 0.11 probably_damaging(0.956) TCGA-EE-A3AA-06 10 6470160 6470160 G A PRKCQ 3'UTR 0.15 TCGA-EE-A3AA-06 10 6470161 6470161 G A PRKCQ 3'UTR 0.16 TCGA-EE-A3AA-06 10 64966362 64966362 G A JMJD1C Silent p.N1689N 0.13 TCGA-EE-A3AA-06 10 6540419 6540419 C T PRKCQ Missense_Mutation p.E161K 0.10 tolerated(0.74) benign(0.216) TCGA-EE-A3AA-06 10 68979493 68979493 C T CTNNA3 Missense_Mutation p.D239N 0.09 tolerated(0.07) possibly_damaging(0.822) TCGA-EE-A3AA-06 10 69366778 69366778 G A CTNNA3 Silent p.N43N 0.09 TCGA-EE-A3AA-06 10 70670972 70670972 A G DDX50 Silent p.Q203Q 0.07 TCGA-EE-A3AA-06 10 72541687 72541687 G A TBATA Silent p.F49F 0.10 TCGA-EE-A3AA-06 10 7262419 7262419 G A SFMBT2 Silent p.A428A 0.10 TCGA-EE-A3AA-06 10 73330619 73330619 G A CDH23 Missense_Mutation p.D233N 0.15 tolerated(0.38) benign(0.057) TCGA-EE-A3AA-06 10 73453962 73453962 C T CDH23 Silent p.I337I 0.15 TCGA-EE-A3AA-06 10 73558989 73558989 C T CDH23 Silent p.I152I 0.11 TCGA-EE-A3AA-06 10 75276290 75276290 C T USP54 Silent p.E1298E 0.09 TCGA-EE-A3AA-06 10 78649263 78649263 C T KCNMA1 Missense_Mutation p.G1119E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 10 79566529 79566529 G A DLG5 Missense_Mutation p.P1652S 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 10 79767571 79767571 G A POLR3A Silent p.L655L 0.09 TCGA-EE-A3AA-06 10 79767572 79767572 G A POLR3A Silent p.T654T 0.09 TCGA-EE-A3AA-06 10 84118519 84118519 G A NRG3 Missense_Mutation p.R283Q 0.11 tolerated(0.16) benign(0.043) TCGA-EE-A3AA-06 10 84745414 84745414 G A NRG3 3'Flank 0.13 TCGA-EE-A3AA-06 10 85984762 85984762 C T LRIT2 Silent p.G73G 0.13 TCGA-EE-A3AA-06 10 91533808 91533808 C T KIF20B 3'UTR 0.16 TCGA-EE-A3AA-06 10 95660969 95660969 G A SLC35G1 Missense_Mutation p.G274R 0.10 tolerated(0.06) possibly_damaging(0.474) TCGA-EE-A3AA-06 10 95848986 95848986 G A PLCE1 Intron 0.09 TCGA-EE-A3AA-06 10 96827096 96827096 C T CYP2C8 Missense_Mutation p.G117E 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 10 98136459 98136459 C T TLL2 Missense_Mutation p.R813K 0.10 deleterious(0.03) possibly_damaging(0.904) TCGA-EE-A3AA-06 10 99968076 99968076 C T R3HCC1L Nonsense_Mutation p.R69* 0.10 TCGA-EE-A3AA-06 11 101344298 101344298 C T TRPC6 Missense_Mutation p.G651R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 11 101833039 101833039 G A KIAA1377 Missense_Mutation p.D425N 0.20 tolerated(0.07) benign(0.126) TCGA-EE-A3AA-06 11 101953871 101953871 C T C11orf70 Missense_Mutation p.P249S 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A3AA-06 11 102221006 102221006 C T BIRC2 Missense_Mutation p.P141S 0.23 tolerated(0.13) benign(0.014) TCGA-EE-A3AA-06 11 103124167 103124167 T C DYNC2H1 Missense_Mutation p.L3406S 0.18 probably_damaging(1) TCGA-EE-A3AA-06 11 103907887 103907887 G A DDI1 Missense_Mutation p.G113R 0.18 tolerated(0.52) benign(0.023) TCGA-EE-A3AA-06 11 104871083 104871083 A C CASP5 Missense_Mutation p.L299R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 11 104874097 104874097 G A CASP5 Silent p.I162I 0.18 TCGA-EE-A3AA-06 11 10514899 10514899 G A AMPD3 Missense_Mutation p.D324N 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 11 105623907 105623907 G A GRIA4 Missense_Mutation p.E150K 0.09 tolerated(1) benign(0.003) TCGA-EE-A3AA-06 11 106810698 106810698 C T GUCY1A2 Missense_Mutation p.E232K 0.17 tolerated(0.36) benign(0.097) TCGA-EE-A3AA-06 11 10825854 10825854 G A EIF4G2 Missense_Mutation p.P155S 0.12 tolerated(0.38) benign(0.003) TCGA-EE-A3AA-06 11 109294418 109294418 G A C11orf87 Missense_Mutation p.R20Q 0.14 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-EE-A3AA-06 11 110451159 110451159 C T ARHGAP20 Silent p.K837K 0.10 TCGA-EE-A3AA-06 11 113285125 113285125 C T DRD2 Missense_Mutation p.G261E 0.12 tolerated(0.36) benign(0.002) TCGA-EE-A3AA-06 11 113802506 113802506 G A HTR3B Nonsense_Mutation p.W95* 0.13 TCGA-EE-A3AA-06 11 11398774 11398774 G A GALNT18 Missense_Mutation p.P311L 0.09 tolerated(1) probably_damaging(1) TCGA-EE-A3AA-06 11 11398876 11398876 G A GALNT18 Missense_Mutation p.S277L 0.09 tolerated(0.25) benign(0.059) TCGA-EE-A3AA-06 11 114121132 114121132 G A ZBTB16 Missense_Mutation p.G626D 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 11 117307844 117307844 C T DSCAML1 Missense_Mutation p.D1632N 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A3AA-06 11 118967646 118967646 G A DPAGT1 3'UTR 0.22 TCGA-EE-A3AA-06 11 120117175 120117175 G A POU2F3 Missense_Mutation p.D18N 0.15 deleterious(0.01) benign(0.007) TCGA-EE-A3AA-06 11 120852905 120852905 G A GRIK4 Nonsense_Mutation p.W829* 0.09 TCGA-EE-A3AA-06 11 121475026 121475026 C T SORL1 Silent p.A1548A 0.21 TCGA-EE-A3AA-06 11 123600433 123600433 C T ZNF202 Missense_Mutation p.S168N 0.09 deleterious(0.01) benign(0.013) TCGA-EE-A3AA-06 11 123753985 123753985 C T TMEM225 Missense_Mutation p.E180K 0.08 tolerated(0.38) benign(0.012) TCGA-EE-A3AA-06 11 123777424 123777424 G A OR8D4 Missense_Mutation p.G96R 0.15 deleterious(0.01) benign(0.059) TCGA-EE-A3AA-06 11 123777516 123777516 C T OR8D4 Silent p.I126I 0.11 TCGA-EE-A3AA-06 11 123908941 123908941 G A OR10G7 Silent p.F256F 0.17 TCGA-EE-A3AA-06 11 123988955 123988955 G A VWA5A Silent p.G102G 0.10 TCGA-EE-A3AA-06 11 124016019 124016019 G A VWA5A Missense_Mutation p.E744K 0.11 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AA-06 11 124189785 124189785 G A OR8D2 Silent p.F103F 0.23 TCGA-EE-A3AA-06 11 124253113 124253113 G A OR8B2 Missense_Mutation p.L43F 0.10 deleterious_low_confidence(0.05) benign(0.005) TCGA-EE-A3AA-06 11 124412707 124412707 G A OR8B12 Missense_Mutation p.P282S 0.19 deleterious_low_confidence(0.01) benign(0.314) TCGA-EE-A3AA-06 11 124413290 124413290 C T OR8B12 Silent p.R87R 0.20 TCGA-EE-A3AA-06 11 128781827 128781827 G A KCNJ5 Missense_Mutation p.R220Q 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 11 129246109 129246109 C T BARX2 Missense_Mutation p.S60F 0.14 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A3AA-06 11 130058514 130058514 A G ST14 Missense_Mutation p.T111A 0.09 tolerated(0.6) benign(0.02) TCGA-EE-A3AA-06 11 130069911 130069911 G A ST14 Missense_Mutation p.E625K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 132184559 132184559 A G NTM Missense_Mutation p.N299S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 133790076 133790076 G A IGSF9B Missense_Mutation p.R1182W 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 134212723 134212723 C T GLB1L2 Silent p.F54F 0.15 TCGA-EE-A3AA-06 11 1606189 1606189 C T KRTAP5-1 Silent p.G97G 0.16 TCGA-EE-A3AA-06 11 1619548 1619548 C T KRTAP5-2 5'Flank 0.14 TCGA-EE-A3AA-06 11 17418816 17418816 C T ABCC8 Missense_Mutation p.M1304I 0.17 tolerated(0.25) benign(0) TCGA-EE-A3AA-06 11 17485016 17485016 A T ABCC8 Missense_Mutation p.L183H 0.10 deleterious(0) possibly_damaging(0.861) TCGA-EE-A3AA-06 11 17523528 17523528 C T USH1C Splice_Site p.X729_splice 0.15 TCGA-EE-A3AA-06 11 18253192 18253192 G A SAA4 Nonsense_Mutation p.Q84* 0.16 TCGA-EE-A3AA-06 11 19077900 19077900 C A MRGPRX2 Missense_Mutation p.G17V 0.16 tolerated(0.08) benign(0.182) TCGA-EE-A3AA-06 11 2190958 2190958 C T TH Silent p.G109G 0.10 TCGA-EE-A3AA-06 11 2356766 2356766 G A CD81-AS1 Intron 0.13 TCGA-EE-A3AA-06 11 27679529 27679529 C T BDNF Missense_Mutation p.G277S 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3AA-06 11 282771 282771 C T NLRP6 Silent p.D725D 0.12 TCGA-EE-A3AA-06 11 3028115 3028115 G A CARS Missense_Mutation p.H715Y 0.17 deleterious(0.01) benign(0.212) TCGA-EE-A3AA-06 11 3028116 3028116 G A CARS Silent p.D714D 0.16 TCGA-EE-A3AA-06 11 30946900 30946900 C T DCDC1 Missense_Mutation p.G985R 0.14 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AA-06 11 32439123 32439123 C T WT1 Missense_Mutation p.G317E 0.14 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EE-A3AA-06 11 32632752 32632752 G A CCDC73 Missense_Mutation p.P986S 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3AA-06 11 32635808 32635808 G A CCDC73 Silent p.L686L 0.10 TCGA-EE-A3AA-06 11 33886175 33886175 C T LMO2 Missense_Mutation p.R146Q 0.17 tolerated(0.26) probably_damaging(0.963) TCGA-EE-A3AA-06 11 34502435 34502435 C T ELF5 Nonsense_Mutation p.W195* 0.11 TCGA-EE-A3AA-06 11 34680103 34680103 G A EHF Missense_Mutation p.E233K 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 11 36422691 36422691 C T PRR5L Missense_Mutation p.P7L 0.11 deleterious_low_confidence(0) benign(0.01) TCGA-EE-A3AA-06 11 3797170 3797170 G A NUP98 Missense_Mutation p.S146F 0.10 deleterious(0) probably_damaging(0.917) TCGA-EE-A3AA-06 11 4103438 4103438 G A STIM1 Missense_Mutation p.E332K 0.12 deleterious(0.02) possibly_damaging(0.628) TCGA-EE-A3AA-06 11 4411268 4411268 G A TRIM21 Silent p.A124A 0.12 TCGA-EE-A3AA-06 11 4567089 4567089 G A OR52M1 Missense_Mutation p.M223I 0.15 tolerated(0.2) benign(0.007) TCGA-EE-A3AA-06 11 45672010 45672010 C T CHST1 Missense_Mutation p.G155E 0.18 tolerated(0.33) probably_damaging(0.958) TCGA-EE-A3AA-06 11 45672011 45672011 C T CHST1 Missense_Mutation p.G155R 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A3AA-06 11 4674360 4674360 G A OR51E1 Missense_Mutation p.G202S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 11 4824701 4824701 C T OR52R1 Missense_Mutation p.D304N 0.20 tolerated(0.07) benign(0.013) TCGA-EE-A3AA-06 11 4903161 4903161 C T OR51T1 Missense_Mutation p.S38F 0.11 tolerated(0.82) possibly_damaging(0.731) TCGA-EE-A3AA-06 11 49175930 49175930 G A FOLH1 Nonsense_Mutation p.R580* 0.20 TCGA-EE-A3AA-06 11 4929499 4929499 G A OR51A7 Silent p.E300E 0.17 TCGA-EE-A3AA-06 11 4967879 4967879 G A OR51A4 Missense_Mutation p.S151F 0.11 tolerated(0.19) benign(0.005) TCGA-EE-A3AA-06 11 5173466 5173466 G A OR52A1 Missense_Mutation p.S45F 0.11 tolerated(0.71) benign(0.005) TCGA-EE-A3AA-06 11 5221210 5221210 C T OR51V1 Missense_Mutation p.E241K 0.09 tolerated(0.08) benign(0.044) TCGA-EE-A3AA-06 11 5270612 5270612 G A HBG1 Missense_Mutation p.P101S 0.25 deleterious(0.02) benign(0.229) TCGA-EE-A3AA-06 11 5274582 5274582 G A HBG2 Silent p.F123F 0.10 TCGA-EE-A3AA-06 11 5410856 5410856 C T OR51M1 Silent p.S76S 0.13 TCGA-EE-A3AA-06 11 5443627 5443627 C T OR51Q1 Missense_Mutation p.S66F 0.20 deleterious(0.01) benign(0.157) TCGA-EE-A3AA-06 11 5443628 5443628 C T OR51Q1 Silent p.S66S 0.19 TCGA-EE-A3AA-06 11 55135834 55135834 C T OR4A15 Missense_Mutation p.H159Y 0.10 deleterious_low_confidence(0.04) benign(0.41) TCGA-EE-A3AA-06 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.09 TCGA-EE-A3AA-06 11 5530011 5530011 C T UBQLN3 Missense_Mutation p.D260N 0.16 deleterious(0) probably_damaging(0.918) TCGA-EE-A3AA-06 11 5536370 5536370 C T UBQLNL Missense_Mutation p.M434I 0.09 tolerated(0.58) benign(0.002) TCGA-EE-A3AA-06 11 5536967 5536967 G A UBQLNL Silent p.I235I 0.10 TCGA-EE-A3AA-06 11 55579528 55579528 G A OR5L1 Missense_Mutation p.E196K 0.08 tolerated(0.1) benign(0.042) TCGA-EE-A3AA-06 11 56043350 56043350 C T OR5T1 Missense_Mutation p.S79L 0.10 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AA-06 11 5618118 5618118 C T TRIM6 5'UTR 0.15 TCGA-EE-A3AA-06 11 5626584 5626584 G A TRIM6 Silent p.E207E 0.20 TCGA-EE-A3AA-06 11 56310098 56310098 G A OR5M11 Silent p.I212I 0.18 TCGA-EE-A3AA-06 11 5632083 5632083 G A TRIM6 Silent p.V354V 0.20 TCGA-EE-A3AA-06 11 5632084 5632084 G A TRIM6 Missense_Mutation p.G355R 0.20 tolerated(0.5) benign(0.037) TCGA-EE-A3AA-06 11 5632314 5632314 G A TRIM6 Silent p.V431V 0.10 TCGA-EE-A3AA-06 11 56510996 56510996 C T OR9G4 Missense_Mutation p.A98T 0.12 tolerated(0.09) benign(0.019) TCGA-EE-A3AA-06 11 56511147 56511147 C T OR9G4 Silent p.L47L 0.14 TCGA-EE-A3AA-06 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.28 TCGA-EE-A3AA-06 11 57569650 57569650 C A CTNND1 Missense_Mutation p.L468I 0.17 tolerated(0.42) probably_damaging(0.999) TCGA-EE-A3AA-06 11 57576844 57576844 A T CTNND1 Missense_Mutation p.T781S 0.09 deleterious(0.04) probably_damaging(0.94) TCGA-EE-A3AA-06 11 57576845 57576845 C T CTNND1 Missense_Mutation p.T781I 0.09 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AA-06 11 57577669 57577669 G A CTNND1 Missense_Mutation p.E842K 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-EE-A3AA-06 11 5841866 5841866 G A OR52N2 Missense_Mutation p.A101T 0.10 tolerated(1) benign(0.003) TCGA-EE-A3AA-06 11 59210711 59210711 C T OR5A1 Missense_Mutation p.P24S 0.15 deleterious(0) benign(0.213) TCGA-EE-A3AA-06 11 59211349 59211349 C T OR5A1 Silent p.G236G 0.14 TCGA-EE-A3AA-06 11 5969256 5969256 G A OR56A3 Missense_Mutation p.R227Q 0.12 tolerated(0.08) benign(0.055) TCGA-EE-A3AA-06 11 59943007 59943007 C T MS4A6A Silent p.Q167Q 0.12 TCGA-EE-A3AA-06 11 60161401 60161401 C T MS4A7 3'UTR 0.25 TCGA-EE-A3AA-06 11 60235852 60235852 G A MS4A1 Missense_Mutation p.E269K 0.19 tolerated(0.23) probably_damaging(0.994) TCGA-EE-A3AA-06 11 61290547 61290547 C T SYT7 Silent p.K444K 0.10 TCGA-EE-A3AA-06 11 61508053 61508053 G A DAGLA Missense_Mutation p.G658R 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 61914343 61914343 C T INCENP Missense_Mutation p.R725W 0.33 deleterious(0.04) unknown(0) TCGA-EE-A3AA-06 11 6245696 6245696 G A FAM160A2 Silent p.H17H 0.12 TCGA-EE-A3AA-06 11 62474646 62474646 G A BSCL2 Nonsense_Mutation p.Q8* 0.16 TCGA-EE-A3AA-06 11 62474647 62474647 G A BSCL2 Silent p.D7D 0.16 TCGA-EE-A3AA-06 11 6260704 6260704 C T CNGA4 Silent p.I51I 0.13 TCGA-EE-A3AA-06 11 62951205 62951205 C T SLC22A25 Silent p.R305R 0.18 TCGA-EE-A3AA-06 11 63235936 63235936 C T HRASLS5 Missense_Mutation p.G126E 0.10 tolerated(0.14) possibly_damaging(0.876) TCGA-EE-A3AA-06 11 64065031 64065031 C T KCNK4 Silent p.F189F 0.14 TCGA-EE-A3AA-06 11 64329570 64329570 G A SLC22A11 Missense_Mutation p.G198S 0.21 tolerated(0.32) benign(0.089) TCGA-EE-A3AA-06 11 64329895 64329895 C T SLC22A11 Missense_Mutation p.S270F 0.09 tolerated(1) benign(0) TCGA-EE-A3AA-06 11 64336179 64336179 A C SLC22A11 Silent p.G437G 0.11 TCGA-EE-A3AA-06 11 64756799 64756799 G A BATF2 Silent p.L209L 0.18 TCGA-EE-A3AA-06 11 64756867 64756867 C T BATF2 Missense_Mutation p.G187R 0.19 tolerated(0.59) benign(0.005) TCGA-EE-A3AA-06 11 64938905 64938905 G A SPDYC Missense_Mutation p.G45D 0.28 tolerated(0.29) benign(0.018) TCGA-EE-A3AA-06 11 65373513 65373513 G A MAP3K11 Missense_Mutation p.S548F 0.35 tolerated(0.06) possibly_damaging(0.675) TCGA-EE-A3AA-06 11 66241261 66241261 C T PELI3 Silent p.T235T 0.12 TCGA-EE-A3AA-06 11 66334760 66334760 C T CTSF Silent p.K188K 0.08 TCGA-EE-A3AA-06 11 67177203 67177203 C T TBC1D10C Missense_Mutation p.S440F 0.19 tolerated_low_confidence(0.09) benign(0.052) TCGA-EE-A3AA-06 11 67219347 67219347 C T GPR152 Silent p.L283L 0.13 TCGA-EE-A3AA-06 11 67926500 67926500 G A SUV420H1 Missense_Mutation p.P438L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 11 6867228 6867228 C T OR10A5 Silent p.F105F 0.18 TCGA-EE-A3AA-06 11 6897954 6897954 G A OR10A4 Missense_Mutation p.A26T 0.14 tolerated(0.71) benign(0.001) TCGA-EE-A3AA-06 11 70319071 70319071 G A SHANK2 Missense_Mutation p.P1819L 0.09 deleterious(0) possibly_damaging(0.908) TCGA-EE-A3AA-06 11 71847057 71847057 G A FOLR3 Missense_Mutation p.G20E 0.12 tolerated(0.34) probably_damaging(0.931) TCGA-EE-A3AA-06 11 72422081 72422081 G A ARAP1 Missense_Mutation p.R400W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 74407598 74407598 C T CHRDL2 Missense_Mutation p.G434E 0.10 tolerated_low_confidence(0.26) benign(0.176) TCGA-EE-A3AA-06 11 76922935 76922935 C T MYO7A Missense_Mutation p.L2103F 0.18 tolerated(0.62) benign(0.068) TCGA-EE-A3AA-06 11 77047244 77047244 C T PAK1 Missense_Mutation p.E434K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 11 7981952 7981952 C T NLRP10 Missense_Mutation p.E403K 0.23 tolerated(0.27) benign(0.006) TCGA-EE-A3AA-06 11 7984790 7984790 C T NLRP10 Missense_Mutation p.E85K 0.16 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A3AA-06 11 802336 802336 G T PIDD Missense_Mutation p.F345L 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A3AA-06 11 8111718 8111718 G A TUB Missense_Mutation p.E120K 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AA-06 11 85606413 85606413 G A CCDC83 Missense_Mutation p.E197K 0.15 deleterious(0.04) benign(0.392) TCGA-EE-A3AA-06 11 89133540 89133540 A G NOX4 Missense_Mutation p.L285P 0.14 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A3AA-06 11 89911136 89911136 G A NAALAD2 Missense_Mutation p.R570Q 0.09 tolerated(0.34) probably_damaging(1) TCGA-EE-A3AA-06 11 92087131 92087131 G A FAT3 Missense_Mutation p.G618E 0.06 probably_damaging(1) TCGA-EE-A3AA-06 11 92087581 92087581 G A FAT3 Missense_Mutation p.G768E 0.09 probably_damaging(1) TCGA-EE-A3AA-06 11 92533811 92533811 C T FAT3 Silent p.F2544F 0.13 TCGA-EE-A3AA-06 11 92543052 92543052 C T FAT3 Silent p.P3097P 0.13 TCGA-EE-A3AA-06 11 93212333 93212333 G A SMCO4 Missense_Mutation p.P8L 0.19 tolerated(0.31) unknown(0) TCGA-EE-A3AA-06 11 93754684 93754684 G A HEPHL1 Silent p.G50G 0.10 TCGA-EE-A3AA-06 11 93913146 93913146 G A PANX1 Silent p.V308V 0.23 TCGA-EE-A3AA-06 11 94113452 94113452 G A GPR83 Missense_Mutation p.P379S 0.16 tolerated(0.05) benign(0.061) TCGA-EE-A3AA-06 11 94353268 94353268 G T PIWIL4 Missense_Mutation p.Q800H 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AA-06 11 9537807 9537807 G A ZNF143 Silent p.Q528Q 0.14 TCGA-EE-A3AA-06 12 101295556 101295556 C T ANO4 5'UTR 0.17 TCGA-EE-A3AA-06 12 102045123 102045123 G A MYBPC1 Missense_Mutation p.G468D 0.14 deleterious(0.02) probably_damaging(0.956) TCGA-EE-A3AA-06 12 102163906 102163906 G A GNPTAB Missense_Mutation p.H393Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AA-06 12 102811655 102811655 C T IGF1 Missense_Mutation p.E177K 0.17 tolerated_low_confidence(0.07) benign(0.01) TCGA-EE-A3AA-06 12 106460465 106460465 C T NUAK1 3'UTR 0.15 TCGA-EE-A3AA-06 12 106717399 106717399 C T TCP11L2 Silent p.F249F 0.18 TCGA-EE-A3AA-06 12 10777294 10777294 G A STYK1 Silent p.A294A 0.09 TCGA-EE-A3AA-06 12 108045516 108045516 G A BTBD11 Silent p.A1019A 0.12 TCGA-EE-A3AA-06 12 108686417 108686417 C T CMKLR1 Missense_Mutation p.G108E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 12 11083727 11083727 C T PRH2 Intron 0.15 TCGA-EE-A3AA-06 12 11138916 11138916 G A TAS2R50 Silent p.L182L 0.09 TCGA-EE-A3AA-06 12 11174815 11174815 A G TAS2R19 Missense_Mutation p.L119P 0.08 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AA-06 12 111786014 111786014 C T CUX2 Missense_Mutation p.A1449V 0.13 tolerated_low_confidence(0.39) benign(0.001) TCGA-EE-A3AA-06 12 113319643 113319643 G A RPH3A Missense_Mutation p.A440T 0.17 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AA-06 12 11546467 11546467 C T PRB2 Missense_Mutation p.G182E 0.11 deleterious(0.01) unknown(0) TCGA-EE-A3AA-06 12 117768203 117768203 C T NOS1 Silent p.K224K 0.24 TCGA-EE-A3AA-06 12 117768363 117768363 G A NOS1 Missense_Mutation p.S171L 0.17 tolerated_low_confidence(0.12) benign(0.001) TCGA-EE-A3AA-06 12 117768817 117768817 G A NOS1 Missense_Mutation p.L20F 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AA-06 12 119631706 119631706 G A HSPB8 3'UTR 0.21 TCGA-EE-A3AA-06 12 120221755 120221755 G A CIT Missense_Mutation p.S501F 0.20 deleterious(0.01) possibly_damaging(0.492) TCGA-EE-A3AA-06 12 123186913 123186913 G A HCAR2 Silent p.S306S 0.19 TCGA-EE-A3AA-06 12 123200397 123200397 G A HCAR3 Silent p.F296F 0.35 TCGA-EE-A3AA-06 12 124265846 124265846 G A DNAH10 Missense_Mutation p.G220S 0.12 benign(0.04) TCGA-EE-A3AA-06 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.11 probably_damaging(0.996) TCGA-EE-A3AA-06 12 124497312 124497312 C T ZNF664 Silent p.A207A 0.17 TCGA-EE-A3AA-06 12 125461959 125461959 G A DHX37 Silent p.I272I 0.11 TCGA-EE-A3AA-06 12 126138111 126138111 G A TMEM132B Missense_Mutation p.E698K 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A3AA-06 12 129559502 129559502 C T TMEM132D Missense_Mutation p.E740K 0.12 deleterious(0) benign(0.221) TCGA-EE-A3AA-06 12 130841563 130841563 G A PIWIL1 Missense_Mutation p.R502Q 0.15 tolerated(0.12) possibly_damaging(0.775) TCGA-EE-A3AA-06 12 130892332 130892332 C T RIMBP2 Missense_Mutation p.R955Q 0.16 deleterious(0.02) benign(0.286) TCGA-EE-A3AA-06 12 130941052 130941052 G A RIMBP2 Missense_Mutation p.S99F 0.14 deleterious(0.02) possibly_damaging(0.713) TCGA-EE-A3AA-06 12 133197083 133197083 G A P2RX2 Missense_Mutation p.E230K 0.23 tolerated(0.36) benign(0.064) TCGA-EE-A3AA-06 12 13716344 13716344 G A GRIN2B Silent p.A1276A 0.12 TCGA-EE-A3AA-06 12 13717004 13717004 G A GRIN2B Silent p.I1056I 0.12 TCGA-EE-A3AA-06 12 13724782 13724782 G A GRIN2B Silent p.F709F 0.18 TCGA-EE-A3AA-06 12 13761588 13761588 G A GRIN2B Silent p.F653F 0.16 TCGA-EE-A3AA-06 12 15264322 15264322 C T RERG Missense_Mutation p.D50N 0.12 tolerated(0.08) benign(0.016) TCGA-EE-A3AA-06 12 15734691 15734691 G A PTPRO Missense_Mutation p.E1071K 0.35 tolerated(0.29) benign(0.001) TCGA-EE-A3AA-06 12 18234187 18234187 C T RERGL Missense_Mutation p.G186R 0.18 deleterious(0.03) probably_damaging(0.961) TCGA-EE-A3AA-06 12 20790115 20790115 C T PDE3A Missense_Mutation p.P695S 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3AA-06 12 21033868 21033868 G A SLCO1B3 Missense_Mutation p.E471K 0.16 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AA-06 12 21196307 21196307 G A SLCO1B7 Missense_Mutation p.G209E 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 12 21427408 21427408 G A SLCO1A2 Silent p.T596T 0.18 TCGA-EE-A3AA-06 12 21665283 21665283 C T GOLT1B Silent p.S117S 0.16 TCGA-EE-A3AA-06 12 21997430 21997430 T C ABCC9 Missense_Mutation p.N1101S 0.15 deleterious(0.02) benign(0.219) TCGA-EE-A3AA-06 12 22059147 22059147 C T ABCC9 Missense_Mutation p.E511K 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 12 33031376 33031376 C T PKP2 Silent p.R146R 0.17 TCGA-EE-A3AA-06 12 33559745 33559745 T C SYT10 Silent p.K352K 0.20 TCGA-EE-A3AA-06 12 3677890 3677890 G A PRMT8 Missense_Mutation p.G167D 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3AA-06 12 39947934 39947934 C T ABCD2 Splice_Site p.X668_splice 0.13 TCGA-EE-A3AA-06 12 40114666 40114666 G A C12orf40 Missense_Mutation p.M524I 0.14 tolerated(0.07) benign(0.001) TCGA-EE-A3AA-06 12 40668764 40668764 G A LRRK2 Missense_Mutation p.R637Q 0.28 tolerated(0.41) probably_damaging(0.998) TCGA-EE-A3AA-06 12 41386974 41386974 C T CNTN1 Silent p.I672I 0.16 TCGA-EE-A3AA-06 12 43770404 43770404 G A ADAMTS20 Missense_Mutation p.T1683I 0.17 deleterious(0.01) benign(0.444) TCGA-EE-A3AA-06 12 4385251 4385251 G A CCND2 Silent p.P92P 0.20 TCGA-EE-A3AA-06 12 4398042 4398042 C T CCND2 Silent p.I202I 0.18 TCGA-EE-A3AA-06 12 4737087 4737087 T G AKAP3 Missense_Mutation p.K327N 0.15 deleterious(0) probably_damaging(0.909) TCGA-EE-A3AA-06 12 48249476 48249476 G A VDR Missense_Mutation p.A281V 0.18 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A3AA-06 12 48372487 48372487 C T COL2A1 Missense_Mutation p.G930S 0.15 unknown(0) TCGA-EE-A3AA-06 12 49521694 49521694 G A TUBA1B 3'UTR 0.10 TCGA-EE-A3AA-06 12 49666051 49666051 G A TUBA1C Missense_Mutation p.G131S 0.14 tolerated_low_confidence(0.05) probably_damaging(0.976) TCGA-EE-A3AA-06 12 50189926 50189926 C T NCKAP5L Missense_Mutation p.E573K 0.13 tolerated(0.05) probably_damaging(0.964) TCGA-EE-A3AA-06 12 51853762 51853762 C T SLC4A8 Missense_Mutation p.P295S 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 12 52709720 52709720 C T KRT83 Missense_Mutation p.E407K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 12 53044161 53044161 C T KRT2 Silent p.L254L 0.18 TCGA-EE-A3AA-06 12 53167422 53167422 C T KRT76 Missense_Mutation p.E274K 0.22 deleterious(0.02) possibly_damaging(0.679) TCGA-EE-A3AA-06 12 53171127 53171127 G A KRT76 5'UTR 0.16 TCGA-EE-A3AA-06 12 53345291 53345291 T G KRT18 Missense_Mutation p.I228M 0.21 deleterious(0.05) possibly_damaging(0.794) TCGA-EE-A3AA-06 12 53589888 53589888 G A ITGB7 Silent p.F304F 0.30 TCGA-EE-A3AA-06 12 54797454 54797454 C T ITGA5 Silent p.Q577Q 0.26 TCGA-EE-A3AA-06 12 54929986 54929986 C T NCKAP1L Silent p.L1010L 0.11 TCGA-EE-A3AA-06 12 55420974 55420974 G A NEUROD4 Missense_Mutation p.G251S 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-EE-A3AA-06 12 55863179 55863179 G A OR6C70 Silent p.I248I 0.14 TCGA-EE-A3AA-06 12 55945720 55945720 C T OR6C4 Missense_Mutation p.S237F 0.13 deleterious_low_confidence(0) benign(0.007) TCGA-EE-A3AA-06 12 56113279 56113279 C T BLOC1S1 Intron 0.21 TCGA-EE-A3AA-06 12 56297254 56297254 G A WIBG Silent p.I16I 0.18 TCGA-EE-A3AA-06 12 56346858 56346858 G A DGKA Silent p.L659L 0.17 TCGA-EE-A3AA-06 12 56848193 56848193 G A MIP Missense_Mutation p.P69S 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 12 57431350 57431350 G A MYO1A Silent p.F679F 0.17 TCGA-EE-A3AA-06 12 57574144 57574144 C T LRP1 Silent p.L1756L 0.11 TCGA-EE-A3AA-06 12 58180876 58180876 C T TSFM Silent p.V138V 0.15 TCGA-EE-A3AA-06 12 5841763 5841763 G A ANO2 Nonsense_Mutation p.R490* 0.23 TCGA-EE-A3AA-06 12 663120 663120 C T B4GALNT3 Silent p.F677F 0.26 TCGA-EE-A3AA-06 12 70206574 70206574 G A RAB3IP Missense_Mutation p.G399S 0.16 deleterious(0.02) benign(0.282) TCGA-EE-A3AA-06 12 7065716 7065716 G A PTPN6 Silent p.E353E 0.21 TCGA-EE-A3AA-06 12 70953082 70953082 C T PTPRB Intron 0.15 TCGA-EE-A3AA-06 12 72335394 72335394 G A TPH2 Missense_Mutation p.D46N 0.24 tolerated(1) benign(0.022) TCGA-EE-A3AA-06 12 7288818 7288818 C T CLSTN3 Silent p.I253I 0.23 TCGA-EE-A3AA-06 12 7531880 7531880 C T CD163L1 Missense_Mutation p.E689K 0.16 tolerated(0.09) benign(0.443) TCGA-EE-A3AA-06 12 7559219 7559219 G A CD163L1 Silent p.S332S 0.18 TCGA-EE-A3AA-06 12 7639347 7639347 G A CD163 Missense_Mutation p.H736Y 0.15 tolerated(0.17) benign(0.068) TCGA-EE-A3AA-06 12 7647788 7647788 G A CD163 Silent p.L437L 0.14 TCGA-EE-A3AA-06 12 7843273 7843273 G A GDF3 Missense_Mutation p.S99F 0.15 tolerated(0.07) benign(0.002) TCGA-EE-A3AA-06 12 8086449 8086449 A G SLC2A3 Missense_Mutation p.F22S 0.13 deleterious(0) probably_damaging(0.93) TCGA-EE-A3AA-06 12 81746930 81746930 C T PPFIA2 Silent p.Q654Q 0.13 TCGA-EE-A3AA-06 12 8376069 8376069 G A FAM90A1 Silent p.S136S 0.23 TCGA-EE-A3AA-06 12 86373975 86373975 C T MGAT4C Missense_Mutation p.E177K 0.21 tolerated(0.18) benign(0.142) TCGA-EE-A3AA-06 12 88391963 88391963 G A C12orf50 Silent p.I46I 0.17 TCGA-EE-A3AA-06 12 8990110 8990110 G A A2ML1 Missense_Mutation p.R268Q 0.10 tolerated(0.5) benign(0.004) TCGA-EE-A3AA-06 12 91502140 91502140 G A LUM Missense_Mutation p.S206F 0.11 deleterious(0.02) possibly_damaging(0.595) TCGA-EE-A3AA-06 12 91572192 91572192 G A DCN Silent p.F46F 0.14 TCGA-EE-A3AA-06 12 978349 978349 C T WNK1 Intron 0.18 TCGA-EE-A3AA-06 13 100807254 100807254 G A PCCA Missense_Mutation p.E108K 0.08 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A3AA-06 13 100953816 100953816 C T PCCA Missense_Mutation p.R390C 0.09 deleterious(0.01) benign(0.339) TCGA-EE-A3AA-06 13 101726881 101726881 C T NALCN Missense_Mutation p.G1363R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 13 103445760 103445760 G A KDELC1 Silent p.I201I 0.16 TCGA-EE-A3AA-06 13 103520529 103520529 C T BIVM-ERCC5 Missense_Mutation p.P1293L 0.10 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AA-06 13 110822999 110822999 C T COL4A1 Missense_Mutation p.G1213S 0.29 probably_damaging(0.998) TCGA-EE-A3AA-06 13 110850934 110850934 C T COL4A1 Missense_Mutation p.E389K 0.20 unknown(0) TCGA-EE-A3AA-06 13 111098181 111098181 C T COL4A2 Silent p.S321S 0.19 TCGA-EE-A3AA-06 13 113536394 113536394 C T ATP11A 3'UTR 0.13 TCGA-EE-A3AA-06 13 20796929 20796929 G A GJB6 Missense_Mutation p.H231Y 0.16 tolerated(1) benign(0.025) TCGA-EE-A3AA-06 13 23906653 23906653 G A SACS Missense_Mutation p.R3788C 0.14 probably_damaging(0.995) TCGA-EE-A3AA-06 13 25264590 25264590 C T ATP12A Silent p.L221L 0.25 TCGA-EE-A3AA-06 13 25362210 25362210 G A RNF17 Silent p.E232E 0.16 TCGA-EE-A3AA-06 13 25399799 25399799 G A RNF17 Missense_Mutation p.E712K 0.19 deleterious(0) benign(0.178) TCGA-EE-A3AA-06 13 25826016 25826016 G A MTMR6 Missense_Mutation p.P485S 0.09 deleterious(0.03) possibly_damaging(0.466) TCGA-EE-A3AA-06 13 26145762 26145762 G A ATP8A2 Missense_Mutation p.V532M 0.10 deleterious(0) probably_damaging(0.972) TCGA-EE-A3AA-06 13 27847599 27847599 C T RASL11A Missense_Mutation p.P233S 0.17 tolerated(1) benign(0) TCGA-EE-A3AA-06 13 28141846 28141846 G A LNX2 Silent p.I262I 0.14 TCGA-EE-A3AA-06 13 28608116 28608116 C T FLT3 Missense_Mutation p.G617E 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 13 29008292 29008292 G A FLT1 Silent p.I193I 0.18 TCGA-EE-A3AA-06 13 33635284 33635284 C T KL Missense_Mutation p.P690S 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 13 36385035 36385035 C T DCLK1 Missense_Mutation p.G542D 0.09 tolerated(0.22) probably_damaging(0.969) TCGA-EE-A3AA-06 13 39358792 39358792 G A FREM2 Missense_Mutation p.E1956K 0.16 deleterious(0.02) possibly_damaging(0.519) TCGA-EE-A3AA-06 13 42161771 42161771 G A VWA8 Silent p.R1716R 0.09 TCGA-EE-A3AA-06 13 46288334 46288334 G A SPERT Missense_Mutation p.G392S 0.14 tolerated(0.62) benign(0.048) TCGA-EE-A3AA-06 13 47470038 47470038 C T HTR2A Missense_Mutation p.D2N 0.11 deleterious_low_confidence(0.01) benign(0.086) TCGA-EE-A3AA-06 13 52515256 52515256 C T ATP7B Missense_Mutation p.E1173K 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 13 52952485 52952485 C T THSD1 Missense_Mutation p.M540I 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AA-06 13 61986195 61986195 C T PCDH20 Silent p.V679V 0.14 TCGA-EE-A3AA-06 13 70456507 70456507 A T KLHL1 Missense_Mutation p.L379M 0.18 tolerated(0.08) probably_damaging(0.968) TCGA-EE-A3AA-06 13 70681382 70681382 C T KLHL1 Silent p.V150V 0.07 TCGA-EE-A3AA-06 13 76408475 76408475 C T LMO7 Nonsense_Mutation p.Q827* 0.09 TCGA-EE-A3AA-06 13 76415931 76415931 C T LMO7 Silent p.D1048D 0.13 TCGA-EE-A3AA-06 13 77670539 77670539 C T MYCBP2 Missense_Mutation p.D3250N 0.14 probably_damaging(0.987) TCGA-EE-A3AA-06 13 84454471 84454471 C T SLITRK1 Missense_Mutation p.R391Q 0.11 tolerated(0.13) benign(0.03) TCGA-EE-A3AA-06 13 86368537 86368537 C T SLITRK6 Missense_Mutation p.E703K 0.10 tolerated(0.69) benign(0.018) TCGA-EE-A3AA-06 13 88327636 88327636 G A SLITRK5 Intron 0.14 TCGA-EE-A3AA-06 13 95131435 95131435 G A DCT Silent p.F25F 0.21 TCGA-EE-A3AA-06 13 96086185 96086185 G A CLDN10 Missense_Mutation p.R33Q 0.20 tolerated(0.08) possibly_damaging(0.666) TCGA-EE-A3AA-06 13 96506627 96506627 G A UGGT2 Missense_Mutation p.R1371C 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 13 97639725 97639725 C T OXGR1 Missense_Mutation p.E97K 0.17 tolerated(0.07) benign(0.432) TCGA-EE-A3AA-06 14 102463512 102463512 G A DYNC1H1 Silent p.Q1235Q 0.11 TCGA-EE-A3AA-06 14 102482683 102482683 T C DYNC1H1 Intron 0.09 TCGA-EE-A3AA-06 14 104208206 104208206 G A PPP1R13B Silent p.S581S 0.12 TCGA-EE-A3AA-06 14 106994268 106994268 G A IGHV3-48 5'UTR 0.09 TCGA-EE-A3AA-06 14 20482453 20482453 C T OR4K14 Silent p.K300K 0.09 TCGA-EE-A3AA-06 14 20666238 20666238 C T OR11G2 Silent p.L248L 0.09 TCGA-EE-A3AA-06 14 22539252 22539252 A T TRAV22 Missense_Mutation p.N38Y 0.15 deleterious(0) possibly_damaging(0.809) TCGA-EE-A3AA-06 14 22690134 22690134 C T TRAV35 Silent p.I31I 0.22 TCGA-EE-A3AA-06 14 23897715 23897715 G A MYH7 Silent p.I524I 0.18 TCGA-EE-A3AA-06 14 23900877 23900877 C T MYH7 Missense_Mutation p.E217K 0.21 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AA-06 14 24885812 24885812 C T NYNRIN Silent p.I1619I 0.15 TCGA-EE-A3AA-06 14 25042969 25042969 G A CTSG Silent p.I214I 0.09 TCGA-EE-A3AA-06 14 36207734 36207734 G A RALGAPA1 Silent p.T524T 0.12 TCGA-EE-A3AA-06 14 51087425 51087425 G A ATL1 Missense_Mutation p.G324D 0.17 tolerated(0.88) benign(0.008) TCGA-EE-A3AA-06 14 51210980 51210980 A - NIN Frame_Shift_Del p.L1723* 0.12 TCGA-EE-A3AA-06 14 52981633 52981633 G A TXNDC16 Silent p.V190V 0.12 TCGA-EE-A3AA-06 14 55236879 55236879 C T SAMD4A Missense_Mutation p.L552F 0.11 deleterious(0.03) benign(0.09) TCGA-EE-A3AA-06 14 57269073 57269073 C T OTX2 Missense_Mutation p.V92I 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A3AA-06 14 58060701 58060701 G A SLC35F4 Missense_Mutation p.S118F 0.10 deleterious(0.01) benign(0.326) TCGA-EE-A3AA-06 14 62463248 62463248 G A SYT16 Missense_Mutation p.G171R 0.11 deleterious(0) possibly_damaging(0.825) TCGA-EE-A3AA-06 14 66028393 66028393 C T FUT8 Missense_Mutation p.H38Y 0.12 deleterious(0.04) benign(0.086) TCGA-EE-A3AA-06 14 69814701 69814701 C T GALNT16 Silent p.N507N 0.12 TCGA-EE-A3AA-06 14 73538380 73538380 C T RBM25 Missense_Mutation p.P11S 0.10 possibly_damaging(0.813) TCGA-EE-A3AA-06 14 77715210 77715210 C T TMEM63C Missense_Mutation p.P622L 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AA-06 14 77845346 77845346 G A SAMD15 Missense_Mutation p.E529K 0.15 tolerated(0.17) benign(0.002) TCGA-EE-A3AA-06 14 77915670 77915670 G A VIPAS39 Missense_Mutation p.A138V 0.11 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A3AA-06 14 88737116 88737116 C T KCNK10 Intron 0.14 TCGA-EE-A3AA-06 14 90769098 90769098 G A NRDE2 Silent p.H459H 0.09 TCGA-EE-A3AA-06 14 91773466 91773466 C T CCDC88C Silent p.G1037G 0.15 TCGA-EE-A3AA-06 14 91927811 91927811 G A SMEK1 Missense_Mutation p.P756S 0.14 tolerated(0.34) benign(0.427) TCGA-EE-A3AA-06 14 93943986 93943986 G A UNC79 5'UTR 0.09 TCGA-EE-A3AA-06 14 94394706 94394706 G A FAM181A Silent p.L87L 0.14 TCGA-EE-A3AA-06 14 94929461 94929461 A T SERPINA9 Missense_Mutation p.L426Q 0.10 deleterious(0) probably_damaging(0.946) TCGA-EE-A3AA-06 14 95081348 95081348 G A SERPINA3 Silent p.G190G 0.09 TCGA-EE-A3AA-06 14 95108235 95108235 G A SERPINA13P Intron 0.10 TCGA-EE-A3AA-06 14 95593075 95593075 G A DICER1 Nonsense_Mutation p.Q249* 0.11 TCGA-EE-A3AA-06 14 96137710 96137710 C T TCL6 RNA 0.24 TCGA-EE-A3AA-06 15 102255132 102255132 C T TARSL2 Missense_Mutation p.V201I 0.11 deleterious(0.02) benign(0.305) TCGA-EE-A3AA-06 15 23812123 23812123 G A MKRN3 Silent p.K398K 0.12 TCGA-EE-A3AA-06 15 23890511 23890511 G A MAGEL2 Silent p.T190T 0.09 TCGA-EE-A3AA-06 15 23931639 23931639 C T NDN Missense_Mutation p.M242I 0.16 deleterious(0) benign(0.001) TCGA-EE-A3AA-06 15 24922781 24922781 C T NPAP1 Silent p.F589F 0.15 TCGA-EE-A3AA-06 15 25434598 25434598 G A SNORD115-11 RNA 0.13 TCGA-EE-A3AA-06 15 25485051 25485051 G A SNORD115-38 RNA 0.09 TCGA-EE-A3AA-06 15 27184505 27184505 C T GABRA5 Intron 0.26 TCGA-EE-A3AA-06 15 31196991 31196991 T C FAN1 Missense_Mutation p.L42P 0.08 deleterious(0) probably_damaging(0.936) TCGA-EE-A3AA-06 15 38228562 38228562 T C TMCO5A Missense_Mutation p.I13T 0.17 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AA-06 15 38229547 38229547 G A TMCO5A Missense_Mutation p.E89K 0.14 deleterious(0.03) probably_damaging(0.928) TCGA-EE-A3AA-06 15 38800062 38800062 C T RASGRP1 Missense_Mutation p.M369I 0.12 deleterious(0.04) benign(0.091) TCGA-EE-A3AA-06 15 38811524 38811524 G A RASGRP1 Silent p.I125I 0.19 TCGA-EE-A3AA-06 15 40655956 40655956 C T DISP2 Missense_Mutation p.P84S 0.13 tolerated_low_confidence(0.36) benign(0.353) TCGA-EE-A3AA-06 15 40764369 40764369 C T CHST14 Silent p.V319V 0.12 TCGA-EE-A3AA-06 15 40764370 40764370 C T CHST14 Nonsense_Mutation p.R320* 0.13 TCGA-EE-A3AA-06 15 40866156 40866156 C T RPUSD2 Missense_Mutation p.P445L 0.13 tolerated(0.08) benign(0.045) TCGA-EE-A3AA-06 15 41341560 41341560 G A INO80 Missense_Mutation p.S834F 0.11 tolerated(0.24) benign(0.241) TCGA-EE-A3AA-06 15 41689109 41689109 G A NDUFAF1 Missense_Mutation p.S50F 0.17 deleterious(0.04) benign(0.06) TCGA-EE-A3AA-06 15 43639246 43639246 T A ADAL Intron 0.14 TCGA-EE-A3AA-06 15 43820287 43820287 C T MAP1A Missense_Mutation p.P2206S 0.15 probably_damaging(0.999) TCGA-EE-A3AA-06 15 43826817 43826817 G A PPIP5K1 3'UTR 0.18 TCGA-EE-A3AA-06 15 43827477 43827477 G A PPIP5K1 Missense_Mutation p.L1233F 0.11 deleterious_low_confidence(0.04) benign(0.001) TCGA-EE-A3AA-06 15 43928403 43928403 G A CATSPER2 Missense_Mutation p.S286F 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 15 44884632 44884632 G A SPG11 Missense_Mutation p.S1547F 0.13 tolerated(0.07) probably_damaging(0.983) TCGA-EE-A3AA-06 15 50158628 50158628 C T ATP8B4 Silent p.G1027G 0.10 TCGA-EE-A3AA-06 15 50212451 50212451 C T ATP8B4 Missense_Mutation p.D639N 0.09 tolerated(0.39) benign(0.059) TCGA-EE-A3AA-06 15 50534864 50534864 G A HDC Missense_Mutation p.R528C 0.21 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A3AA-06 15 51773525 51773525 G A DMXL2 Silent p.F1926F 0.17 TCGA-EE-A3AA-06 15 52100619 52100619 C T TMOD2 Missense_Mutation p.R342C 0.14 deleterious(0) possibly_damaging(0.866) TCGA-EE-A3AA-06 15 54005060 54005060 G A WDR72 Missense_Mutation p.S207F 0.11 tolerated(0.05) possibly_damaging(0.852) TCGA-EE-A3AA-06 15 54305180 54305180 G A UNC13C Missense_Mutation p.G27E 0.16 tolerated_low_confidence(0.09) probably_damaging(0.92) TCGA-EE-A3AA-06 15 54306082 54306082 G A UNC13C Missense_Mutation p.E328K 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A3AA-06 15 54307482 54307482 C T UNC13C Silent p.F794F 0.38 TCGA-EE-A3AA-06 15 58855764 58855764 C T LIPC Silent p.I410I 0.08 TCGA-EE-A3AA-06 15 62994294 62994294 C T TLN2 Silent p.L600L 0.14 TCGA-EE-A3AA-06 15 63092632 63092632 G A TLN2 Silent p.K2100K 0.16 TCGA-EE-A3AA-06 15 68582855 68582855 C T FEM1B Nonsense_Mutation p.R387* 0.14 TCGA-EE-A3AA-06 15 71433813 71433813 G A THSD4 5'UTR 0.24 TCGA-EE-A3AA-06 15 72699430 72699430 C T TMEM202 Missense_Mutation p.T164I 0.17 tolerated(0.89) benign(0.011) TCGA-EE-A3AA-06 15 74328022 74328022 C T PML Intron 0.10 TCGA-EE-A3AA-06 15 74588161 74588161 G A CCDC33 Missense_Mutation p.D388N 0.09 deleterious(0.05) possibly_damaging(0.908) TCGA-EE-A3AA-06 15 76643603 76643603 C T SCAPER Silent p.A1358A 0.10 TCGA-EE-A3AA-06 15 78403552 78403552 G A CIB2 Silent p.I51I 0.13 TCGA-EE-A3AA-06 15 81627299 81627299 C T TMC3 Missense_Mutation p.E741K 0.17 tolerated(0.19) benign(0.041) TCGA-EE-A3AA-06 15 82574637 82574637 C T FAM154B Missense_Mutation p.P144L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 15 83346866 83346866 C T AP3B2 Silent p.R412R 0.14 TCGA-EE-A3AA-06 15 85400567 85400567 G A ALPK3 Silent p.T1068T 0.13 TCGA-EE-A3AA-06 15 85478709 85478709 G A SLC28A1 Missense_Mutation p.G514E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 15 88476248 88476248 G A NTRK3 Silent p.F628F 0.18 TCGA-EE-A3AA-06 15 89172531 89172531 C T AEN Silent p.V205V 0.08 TCGA-EE-A3AA-06 15 89400784 89400784 C T ACAN Silent p.F1656F 0.10 TCGA-EE-A3AA-06 15 89401743 89401743 G A ACAN Missense_Mutation p.G1976E 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 15 90984747 90984747 C T IQGAP1 Missense_Mutation p.A220V 0.10 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AA-06 15 91827361 91827361 C G SV2B Missense_Mutation p.L540V 0.09 deleterious(0.03) possibly_damaging(0.877) TCGA-EE-A3AA-06 15 91835670 91835670 C T SV2B Missense_Mutation p.S647F 0.16 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AA-06 15 94899296 94899296 C T MCTP2 Intron 0.12 TCGA-EE-A3AA-06 15 98511249 98511249 T C ARRDC4 Silent p.P176P 0.16 TCGA-EE-A3AA-06 16 10783843 10783843 C G TEKT5 Missense_Mutation p.G202R 0.12 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AA-06 16 10788230 10788230 C T TEKT5 Silent p.Q167Q 0.08 TCGA-EE-A3AA-06 16 12061632 12061632 G A TNFRSF17 Silent p.T161T 0.19 TCGA-EE-A3AA-06 16 1364364 1364364 C T UBE2I Missense_Mutation p.P46L 0.12 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A3AA-06 16 15698200 15698200 C T KIAA0430 Missense_Mutation p.R1413Q 0.14 tolerated(0.25) probably_damaging(0.999) TCGA-EE-A3AA-06 16 15853472 15853472 G A MYH11 Silent p.F461F 0.17 TCGA-EE-A3AA-06 16 16130356 16130356 C T ABCC1 Silent p.P235P 0.18 TCGA-EE-A3AA-06 16 16256870 16256870 G A ABCC6 Silent p.F1162F 0.15 TCGA-EE-A3AA-06 16 16302616 16302616 C T ABCC6 Missense_Mutation p.E255K 0.21 tolerated(0.14) benign(0.043) TCGA-EE-A3AA-06 16 1884340 1884340 C T MEIOB Missense_Mutation p.G445R 0.13 tolerated(0.06) benign(0.159) TCGA-EE-A3AA-06 16 19056746 19056746 G A TMC7 Silent p.V513V 0.12 TCGA-EE-A3AA-06 16 19460932 19460932 G A TMC5 Missense_Mutation p.D343N 0.16 deleterious(0.02) benign(0.014) TCGA-EE-A3AA-06 16 20357650 20357650 G A UMOD Missense_Mutation p.S327F 0.17 deleterious(0.04) benign(0.024) TCGA-EE-A3AA-06 16 20373857 20373857 C T PDILT Missense_Mutation p.E429K 0.16 tolerated(0.26) possibly_damaging(0.874) TCGA-EE-A3AA-06 16 20966243 20966243 G A DNAH3 Missense_Mutation p.P3655S 0.12 tolerated(0.08) benign(0.1) TCGA-EE-A3AA-06 16 20976520 20976520 G A DNAH3 Missense_Mutation p.R2896C 0.14 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AA-06 16 20986660 20986660 C T DNAH3 Missense_Mutation p.M2718I 0.12 deleterious(0.02) benign(0.431) TCGA-EE-A3AA-06 16 20996486 20996486 G A DNAH3 Silent p.I2526I 0.19 TCGA-EE-A3AA-06 16 21666694 21666694 G A METTL9 Missense_Mutation p.D300N 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 16 21747658 21747658 T G OTOA Missense_Mutation p.F793C 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 16 2226162 2226162 C T TRAF7 Missense_Mutation p.S620F 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 16 24226094 24226094 C T PRKCB Missense_Mutation p.S660F 0.18 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AA-06 16 27373974 27373974 C T IL4R Missense_Mutation p.P434L 0.14 tolerated(1) benign(0.17) TCGA-EE-A3AA-06 16 27549503 27549503 G A GTF3C1 Silent p.F202F 0.23 TCGA-EE-A3AA-06 16 28507536 28507536 G A APOBR Missense_Mutation p.G392R 0.12 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A3AA-06 16 28943738 28943738 C T CD19 Missense_Mutation p.R54W 0.21 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A3AA-06 16 29115349 29115349 C T CTB-134H23.3 RNA 0.19 TCGA-EE-A3AA-06 16 30525122 30525122 C T ITGAL Silent p.F939F 0.15 TCGA-EE-A3AA-06 16 3077242 3077242 C T THOC6 Silent p.I257I 0.12 TCGA-EE-A3AA-06 16 3077243 3077243 C T THOC6 Missense_Mutation p.R258W 0.12 deleterious(0.02) benign(0) TCGA-EE-A3AA-06 16 31089712 31089712 C T ZNF646 Silent p.L689L 0.15 TCGA-EE-A3AA-06 16 31141467 31141467 T C KAT8 Missense_Mutation p.Y301H 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AA-06 16 319515 319515 C T RGS11 Missense_Mutation p.E426K 0.12 deleterious(0) possibly_damaging(0.773) TCGA-EE-A3AA-06 16 3432819 3432819 T C ZSCAN32 3'UTR 0.08 TCGA-EE-A3AA-06 16 3633395 3633395 G A SLX4 Missense_Mutation p.P1619L 0.21 tolerated(0.94) benign(0.001) TCGA-EE-A3AA-06 16 3828033 3828033 C T CREBBP Missense_Mutation p.A698T 0.16 benign(0.038) TCGA-EE-A3AA-06 16 3828034 3828034 C T CREBBP Silent p.Q697Q 0.16 TCGA-EE-A3AA-06 16 46761279 46761279 C T MYLK3 Missense_Mutation p.G595S 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 16 47399758 47399758 G A ITFG1 Missense_Mutation p.T248I 0.18 tolerated(0.14) benign(0.047) TCGA-EE-A3AA-06 16 4790638 4790638 G A C16orf71 Missense_Mutation p.G254E 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 16 50346815 50346815 G A ADCY7 Silent p.Q873Q 0.10 TCGA-EE-A3AA-06 16 5053535 5053535 C T SEC14L5 Silent p.I421I 0.11 TCGA-EE-A3AA-06 16 50707426 50707426 C T SNX20 Missense_Mutation p.G281D 0.21 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A3AA-06 16 50745443 50745443 C T NOD2 Missense_Mutation p.R541W 0.15 deleterious(0) possibly_damaging(0.556) TCGA-EE-A3AA-06 16 51172679 51172679 G A SALL1 Missense_Mutation p.H1152Y 0.11 deleterious(0) probably_damaging(0.912) TCGA-EE-A3AA-06 16 5128005 5128005 C T ALG1 Missense_Mutation p.P243S 0.23 tolerated(0.13) benign(0.01) TCGA-EE-A3AA-06 16 55703514 55703514 C T SLC6A2 Silent p.I104I 0.15 TCGA-EE-A3AA-06 16 55860125 55860125 C T CES1 Missense_Mutation p.E115K 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 16 56401394 56401394 G A AMFR Missense_Mutation p.P521S 0.16 tolerated(0.48) benign(0.001) TCGA-EE-A3AA-06 16 56703804 56703804 C T MT1H Missense_Mutation p.P3L 0.11 deleterious(0.03) unknown(0) TCGA-EE-A3AA-06 16 56924235 56924235 G A SLC12A3 Missense_Mutation p.G779R 0.16 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 16 57060688 57060688 G A NLRC5 Silent p.K611K 0.12 TCGA-EE-A3AA-06 16 57507902 57507902 C T DOK4 Missense_Mutation p.E217K 0.12 deleterious(0) possibly_damaging(0.802) TCGA-EE-A3AA-06 16 57717958 57717958 G A GPR97 Silent p.K332K 0.10 TCGA-EE-A3AA-06 16 57798150 57798150 C T KIFC3 Missense_Mutation p.E508K 0.26 deleterious(0) possibly_damaging(0.77) TCGA-EE-A3AA-06 16 66584106 66584106 G A TK2 5'UTR 0.11 TCGA-EE-A3AA-06 16 67220462 67220462 C T EXOC3L1 Silent p.R461R 0.16 TCGA-EE-A3AA-06 16 67943388 67943388 C T PSKH1 Missense_Mutation p.R246C 0.09 tolerated(0.05) probably_damaging(0.91) TCGA-EE-A3AA-06 16 68289835 68289835 C T PLA2G15 Silent p.F223F 0.11 TCGA-EE-A3AA-06 16 68309064 68309064 C T SLC7A6 Silent p.I145I 0.12 TCGA-EE-A3AA-06 16 70889118 70889118 G A HYDIN Missense_Mutation p.S4119F 0.14 benign(0.071) TCGA-EE-A3AA-06 16 72138024 72138024 C T DHX38 Silent p.L668L 0.09 TCGA-EE-A3AA-06 16 72174465 72174465 C T PMFBP1 Missense_Mutation p.G218D 0.10 tolerated(0.18) probably_damaging(1) TCGA-EE-A3AA-06 16 7645572 7645572 G A RBFOX1 Missense_Mutation p.E184K 0.16 deleterious(0) benign(0.28) TCGA-EE-A3AA-06 16 77353946 77353946 C T ADAMTS18 Missense_Mutation p.E778K 0.20 tolerated(0.3) benign(0.041) TCGA-EE-A3AA-06 16 77387753 77387753 C T ADAMTS18 Silent p.E497E 0.14 TCGA-EE-A3AA-06 16 77396160 77396160 C T ADAMTS18 Missense_Mutation p.G353E 0.13 tolerated(0.44) benign(0.013) TCGA-EE-A3AA-06 16 83781718 83781718 C T CDH13 Missense_Mutation p.S562F 0.19 deleterious(0) possibly_damaging(0.857) TCGA-EE-A3AA-06 16 84351933 84351933 C T WFDC1 Silent p.L131L 0.09 TCGA-EE-A3AA-06 16 9857878 9857878 C T GRIN2A Missense_Mutation p.E1175K 0.15 tolerated(0.52) benign(0.282) TCGA-EE-A3AA-06 17 10309672 10309672 G A MYH8 Silent p.F738F 0.18 TCGA-EE-A3AA-06 17 10355449 10355449 C T MYH4 Missense_Mutation p.E1183K 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 17 11787003 11787003 G A DNAH9 Missense_Mutation p.G3636E 0.12 benign(0.044) TCGA-EE-A3AA-06 17 12656124 12656124 C T MYOCD Missense_Mutation p.P507S 0.20 tolerated(0.7) benign(0.006) TCGA-EE-A3AA-06 17 18030452 18030452 G A MYO15A Missense_Mutation p.M1335I 0.14 unknown(0) TCGA-EE-A3AA-06 17 21319872 21319872 C T KCNJ12 Silent p.P406P 0.12 TCGA-EE-A3AA-06 17 25631814 25631814 C T WSB1 Missense_Mutation p.L163F 0.12 deleterious(0) possibly_damaging(0.526) TCGA-EE-A3AA-06 17 27581268 27581268 G A CRYBA1 Silent p.L183L 0.16 TCGA-EE-A3AA-06 17 27613951 27613951 G A NUFIP2 Missense_Mutation p.P354L 0.16 deleterious(0) possibly_damaging(0.666) TCGA-EE-A3AA-06 17 27909958 27909958 G A GIT1 Missense_Mutation p.P95L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AA-06 17 30302528 30302528 C T SUZ12 Missense_Mutation p.P207S 0.15 tolerated(0.71) probably_damaging(0.998) TCGA-EE-A3AA-06 17 3101680 3101680 C T OR1A2 Silent p.L290L 0.12 TCGA-EE-A3AA-06 17 33325259 33325259 A T LIG3 Missense_Mutation p.M645L 0.25 tolerated(0.4) benign(0.023) TCGA-EE-A3AA-06 17 37922237 37922237 C T IKZF3 Missense_Mutation p.G446R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 17 38079370 38079370 G A ORMDL3 Silent p.I107I 0.14 TCGA-EE-A3AA-06 17 38711757 38711757 C T CCR7 Missense_Mutation p.G125D 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 17 39115106 39115106 G A KRT39 Missense_Mutation p.P408L 0.10 deleterious(0.04) benign(0.007) TCGA-EE-A3AA-06 17 39279985 39279985 G A KRTAP4-12 Silent p.C130C 0.15 TCGA-EE-A3AA-06 17 39334443 39334443 G A KRTAP4-2 5'UTR 0.12 TCGA-EE-A3AA-06 17 39580133 39580133 C T KRT37 Intron 0.18 TCGA-EE-A3AA-06 17 40933268 40933268 C T WNK4 Silent p.S184S 0.19 TCGA-EE-A3AA-06 17 41020661 41020661 G A AOC4P RNA 0.17 TCGA-EE-A3AA-06 17 41132586 41132586 C T RUNDC1 5'UTR 0.17 TCGA-EE-A3AA-06 17 43006350 43006350 G A KIF18B Silent p.S520S 0.21 TCGA-EE-A3AA-06 17 45362045 45362045 G A ITGB3 Missense_Mutation p.E200K 0.19 tolerated(1) benign(0.001) TCGA-EE-A3AA-06 17 4540554 4540554 C T ALOX15 Splice_Site p.X270_splice 0.11 TCGA-EE-A3AA-06 17 48266785 48266785 G A COL1A1 Missense_Mutation p.P928S 0.09 unknown(0) TCGA-EE-A3AA-06 17 48741198 48741198 C T ABCC3 Silent p.I385I 0.22 TCGA-EE-A3AA-06 17 51901483 51901483 G A KIF2B Silent p.K363K 0.17 TCGA-EE-A3AA-06 17 5418809 5418809 G A NLRP1 Silent p.I1362I 0.13 TCGA-EE-A3AA-06 17 55184485 55184485 G A AKAP1 Missense_Mutation p.D554N 0.16 deleterious(0.01) possibly_damaging(0.566) TCGA-EE-A3AA-06 17 56247179 56247179 C T OR4D2 Missense_Mutation p.L55F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 17 60678136 60678136 T C TLK2 Silent p.L559L 0.25 TCGA-EE-A3AA-06 17 61622526 61622526 G A KCNH6 Silent p.L864L 0.14 TCGA-EE-A3AA-06 17 61759136 61759136 C T MAP3K3 Silent p.N202N 0.14 TCGA-EE-A3AA-06 17 61759137 61759137 C T MAP3K3 Missense_Mutation p.P203S 0.16 tolerated(0.68) benign(0.023) TCGA-EE-A3AA-06 17 6607295 6607295 G A SLC13A5 Missense_Mutation p.P150L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 17 66981062 66981062 G A ABCA9 Missense_Mutation p.S1448L 0.12 deleterious(0) possibly_damaging(0.875) TCGA-EE-A3AA-06 17 6718591 6718591 C T TEKT1 Missense_Mutation p.D174N 0.15 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AA-06 17 6718592 6718592 C T TEKT1 Silent p.K173K 0.16 TCGA-EE-A3AA-06 17 71281992 71281992 G A CDC42EP4 Silent p.S216S 0.20 TCGA-EE-A3AA-06 17 72443058 72443058 C T GPRC5C Missense_Mutation p.S451L 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AA-06 17 72877249 72877249 G A FADS6 Silent p.F225F 0.21 TCGA-EE-A3AA-06 17 7330839 7330839 G A C17orf74 3'UTR 0.09 TCGA-EE-A3AA-06 17 73725385 73725385 C T ITGB4 Silent p.S202S 0.16 TCGA-EE-A3AA-06 17 74003516 74003516 C T EVPL Missense_Mutation p.G1924S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 17 7578478 7578478 G A TP53 Missense_Mutation p.P151L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AA-06 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.19 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A3AA-06 17 7579717 7579717 G A TP53 Missense_Mutation p.P27S 0.17 tolerated(0.08) benign(0.219) TCGA-EE-A3AA-06 17 79226063 79226063 G A SLC38A10 Missense_Mutation p.A626V 0.28 tolerated(0.07) benign(0.098) TCGA-EE-A3AA-06 17 8169593 8169593 C T PFAS Missense_Mutation p.L915F 0.10 tolerated(0.05) probably_damaging(0.914) TCGA-EE-A3AA-06 17 8814709 8814709 C T PIK3R5 Missense_Mutation p.A35T 0.23 deleterious(0.03) possibly_damaging(0.897) TCGA-EE-A3AA-06 18 10681664 10681664 C T PIEZO2 Silent p.R2478R 0.10 TCGA-EE-A3AA-06 18 19996309 19996309 C T CTAGE1 Missense_Mutation p.G489D 0.11 deleterious(0.01) benign(0.238) TCGA-EE-A3AA-06 18 24496214 24496214 G A CHST9 3'UTR 0.13 TCGA-EE-A3AA-06 18 28602424 28602424 C T DSC3 Missense_Mutation p.D274N 0.10 tolerated(0.21) probably_damaging(0.932) TCGA-EE-A3AA-06 18 28734748 28734748 C T DSC1 Missense_Mutation p.E206K 0.19 tolerated(0.08) benign(0.077) TCGA-EE-A3AA-06 18 28909865 28909865 G A DSG1 Missense_Mutation p.R128Q 0.13 deleterious(0.05) possibly_damaging(0.777) TCGA-EE-A3AA-06 18 2925283 2925283 G A LPIN2 Missense_Mutation p.P626L 0.08 tolerated(0.42) benign(0.001) TCGA-EE-A3AA-06 18 3119871 3119871 G A MYOM1 Silent p.V1038V 0.14 TCGA-EE-A3AA-06 18 31325280 31325280 G A ASXL3 Missense_Mutation p.R1823Q 0.09 possibly_damaging(0.475) TCGA-EE-A3AA-06 18 32395972 32395972 G A DTNA Missense_Mutation p.E235K 0.19 deleterious(0.03) possibly_damaging(0.747) TCGA-EE-A3AA-06 18 335059 335059 C T COLEC12 Missense_Mutation p.G500E 0.17 deleterious(0) unknown(0) TCGA-EE-A3AA-06 18 34855192 34855192 A G CELF4 Missense_Mutation p.F155L 0.15 deleterious(0) benign(0.008) TCGA-EE-A3AA-06 18 40323527 40323527 C T RIT2 Silent p.L195L 0.09 TCGA-EE-A3AA-06 18 40695397 40695397 C T RIT2 Missense_Mutation p.G30R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 18 40851750 40851750 G A SYT4 Silent p.S299S 0.13 TCGA-EE-A3AA-06 18 47376027 47376027 G A MYO5B Missense_Mutation p.L1409F 0.08 tolerated(0.06) benign(0.02) TCGA-EE-A3AA-06 18 47421394 47421394 G A MYO5B Silent p.L988L 0.15 TCGA-EE-A3AA-06 18 50683759 50683759 C T DCC Missense_Mutation p.P432L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 18 52265098 52265098 C T DYNAP Missense_Mutation p.L119F 0.11 tolerated(0.07) probably_damaging(0.934) TCGA-EE-A3AA-06 18 61255990 61255990 C T SERPINB13 Missense_Mutation p.S30F 0.14 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AA-06 18 63548017 63548017 G A CDH7 Missense_Mutation p.D749N 0.17 tolerated(0.18) benign(0.023) TCGA-EE-A3AA-06 18 67992275 67992275 C T SOCS6 Missense_Mutation p.S124F 0.15 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EE-A3AA-06 18 71790672 71790672 G A FBXO15 Missense_Mutation p.H357Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 18 8253351 8253351 T A PTPRM Missense_Mutation p.L898H 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 18 9522282 9522282 G A RALBP1 Silent p.E276E 0.18 TCGA-EE-A3AA-06 18 9888070 9888070 G A TXNDC2 Missense_Mutation p.E532K 0.13 tolerated(0.21) possibly_damaging(0.705) TCGA-EE-A3AA-06 19 11657667 11657667 C T CNN1 Silent p.F91F 0.23 TCGA-EE-A3AA-06 19 12817329 12817329 C T TNPO2 Intron 0.21 TCGA-EE-A3AA-06 19 13565977 13565977 G A CACNA1A Missense_Mutation p.L115F 0.08 possibly_damaging(0.765) TCGA-EE-A3AA-06 19 13993681 13993681 G A C19orf57 Silent p.P616P 0.13 TCGA-EE-A3AA-06 19 14752245 14752245 G A EMR3 Nonsense_Mutation p.R412* 0.12 TCGA-EE-A3AA-06 19 14829637 14829637 C T ZNF333 Missense_Mutation p.H500Y 0.13 deleterious(0) benign(0.365) TCGA-EE-A3AA-06 19 15284891 15284891 G A NOTCH3 Missense_Mutation p.P1575L 0.20 tolerated(0.22) benign(0.034) TCGA-EE-A3AA-06 19 15349196 15349196 G A BRD4 Missense_Mutation p.L1361F 0.10 possibly_damaging(0.587) TCGA-EE-A3AA-06 19 15586977 15586977 G A PGLYRP2 Silent p.T168T 0.11 TCGA-EE-A3AA-06 19 15758033 15758033 G A CYP4F3 Missense_Mutation p.E142K 0.20 tolerated(0.05) benign(0.005) TCGA-EE-A3AA-06 19 15905792 15905792 C T OR10H5 Missense_Mutation p.P312S 0.12 tolerated(0.16) benign(0.009) TCGA-EE-A3AA-06 19 16025635 16025635 G A CYP4F11 Missense_Mutation p.P396S 0.11 tolerated(0.44) benign(0.082) TCGA-EE-A3AA-06 19 16060184 16060184 C T OR10H4 Missense_Mutation p.R123C 0.16 deleterious(0.02) benign(0.052) TCGA-EE-A3AA-06 19 16899909 16899909 G A NWD1 Missense_Mutation p.D950N 0.08 deleterious(0.04) benign(0.347) TCGA-EE-A3AA-06 19 17516154 17516154 G A BST2 Silent p.A77A 0.11 TCGA-EE-A3AA-06 19 17720794 17720794 G A UNC13A Missense_Mutation p.S1589F 0.08 deleterious(0) probably_damaging(0.958) TCGA-EE-A3AA-06 19 17943659 17943659 G A JAK3 Silent p.A810A 0.17 TCGA-EE-A3AA-06 19 18780075 18780075 C T KLHL26 3'UTR 0.13 TCGA-EE-A3AA-06 19 19112482 19112482 G A SUGP2 Silent p.V977V 0.12 TCGA-EE-A3AA-06 19 19654536 19654536 C T CILP2 Silent p.I394I 0.15 TCGA-EE-A3AA-06 19 21719397 21719397 C T ZNF429 Missense_Mutation p.S181L 0.13 tolerated(0.11) probably_damaging(0.99) TCGA-EE-A3AA-06 19 22170085 22170085 G A ZNF208 Silent p.I53I 0.17 TCGA-EE-A3AA-06 19 22171598 22171598 G A ZNF208 Silent p.N39N 0.09 TCGA-EE-A3AA-06 19 22586296 22586296 C T ZNF98 Missense_Mutation p.D17N 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AA-06 19 23938318 23938318 G A ZNF681 Silent p.F13F 0.08 TCGA-EE-A3AA-06 19 2873557 2873557 C T ZNF556 Missense_Mutation p.P23S 0.15 tolerated(0.44) benign(0.068) TCGA-EE-A3AA-06 19 288022 288022 G A PPAP2C Missense_Mutation p.L89F 0.13 tolerated(0.21) possibly_damaging(0.851) TCGA-EE-A3AA-06 19 30935778 30935778 G A ZNF536 Missense_Mutation p.G437S 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A3AA-06 19 31039827 31039827 G A ZNF536 Missense_Mutation p.D1101N 0.09 deleterious_low_confidence(0) benign(0.21) TCGA-EE-A3AA-06 19 334403 334403 G A MIER2 Silent p.S80S 0.08 TCGA-EE-A3AA-06 19 34810938 34810938 A C KIAA0355 Missense_Mutation p.S208R 0.09 tolerated(0.53) benign(0.117) TCGA-EE-A3AA-06 19 34833032 34833032 C T KIAA0355 Silent p.V731V 0.19 TCGA-EE-A3AA-06 19 34951413 34951413 C T UBA2 Silent p.V480V 0.19 TCGA-EE-A3AA-06 19 35633314 35633314 T C FXYD1 Intron 0.11 TCGA-EE-A3AA-06 19 35823687 35823687 G A CD22 Missense_Mutation p.R91K 0.18 deleterious(0.03) possibly_damaging(0.589) TCGA-EE-A3AA-06 19 35832303 35832303 G A CD22 Missense_Mutation p.G522E 0.20 deleterious(0.02) possibly_damaging(0.835) TCGA-EE-A3AA-06 19 36166864 36166864 C T UPK1A Silent p.F197F 0.25 TCGA-EE-A3AA-06 19 36255943 36255943 C T C19orf55 Missense_Mutation p.S212F 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 19 36278905 36278905 C T ARHGAP33 Silent p.P985P 0.17 TCGA-EE-A3AA-06 19 36339882 36339882 G A NPHS1 Silent p.V336V 0.17 TCGA-EE-A3AA-06 19 36398351 36398351 C T TYROBP Missense_Mutation p.E76K 0.10 tolerated(0.41) benign(0.127) TCGA-EE-A3AA-06 19 36831250 36831250 G A ZFP14 Missense_Mutation p.S493L 0.26 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A3AA-06 19 37643575 37643575 G A ZNF585A Missense_Mutation p.S354L 0.12 deleterious(0.03) possibly_damaging(0.505) TCGA-EE-A3AA-06 19 37733712 37733712 C T ZNF383 Missense_Mutation p.H192Y 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AA-06 19 38610462 38610462 C T SIPA1L3 Silent p.I936I 0.16 TCGA-EE-A3AA-06 19 38987049 38987049 G A RYR1 Missense_Mutation p.E2222K 0.13 benign(0.286) TCGA-EE-A3AA-06 19 39959432 39959432 C T SUPT5H Silent p.F358F 0.12 TCGA-EE-A3AA-06 19 40221994 40221994 G A CLC 3'UTR 0.08 TCGA-EE-A3AA-06 19 40399431 40399431 G A FCGBP Silent p.F2088F 0.24 TCGA-EE-A3AA-06 19 40411886 40411886 C T FCGBP Missense_Mutation p.G1248S 0.19 possibly_damaging(0.893) TCGA-EE-A3AA-06 19 40424197 40424197 T G FCGBP Missense_Mutation p.E669A 0.10 probably_damaging(0.945) TCGA-EE-A3AA-06 19 40424198 40424198 C T FCGBP Missense_Mutation p.E669K 0.10 possibly_damaging(0.456) TCGA-EE-A3AA-06 19 40889916 40889916 C T HIPK4 Nonsense_Mutation p.W199* 0.12 TCGA-EE-A3AA-06 19 40901315 40901315 C T PRX Missense_Mutation p.E982K 0.19 tolerated(0.11) possibly_damaging(0.486) TCGA-EE-A3AA-06 19 41349779 41349779 C T CYP2A6 Silent p.K469K 0.08 TCGA-EE-A3AA-06 19 41700470 41700470 G A CYP2S1 Missense_Mutation p.V67M 0.22 deleterious(0) possibly_damaging(0.708) TCGA-EE-A3AA-06 19 41727060 41727060 C T AXL Silent p.S106S 0.15 TCGA-EE-A3AA-06 19 42092856 42092856 G A CEACAM21 3'UTR 0.09 TCGA-EE-A3AA-06 19 42224024 42224024 C T CEACAM5 Silent p.L556L 0.09 TCGA-EE-A3AA-06 19 43262261 43262261 G A PSG8 Missense_Mutation p.T201I 0.07 tolerated(0.15) benign(0.21) TCGA-EE-A3AA-06 19 43372180 43372180 T A PSG1 3'UTR 0.09 TCGA-EE-A3AA-06 19 43372344 43372344 A T PSG1 Silent p.I384I 0.21 TCGA-EE-A3AA-06 19 43411133 43411133 G A PSG6 Missense_Mutation p.S394F 0.17 tolerated(0.22) benign(0.139) TCGA-EE-A3AA-06 19 43519496 43519496 G A PSG11 Missense_Mutation p.P246S 0.15 tolerated(0.2) possibly_damaging(0.608) TCGA-EE-A3AA-06 19 43529050 43529050 G A PSG11 Missense_Mutation p.L75F 0.14 tolerated(0.35) benign(0.139) TCGA-EE-A3AA-06 19 43680172 43680172 G A PSG5 Missense_Mutation p.L187F 0.09 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AA-06 19 43680251 43680251 C T PSG5 Silent p.E160E 0.19 TCGA-EE-A3AA-06 19 44065134 44065134 C T XRCC1 Silent p.G61G 0.09 TCGA-EE-A3AA-06 19 4433459 4433459 C T CHAF1A Missense_Mutation p.P866S 0.21 tolerated(0.12) benign(0.074) TCGA-EE-A3AA-06 19 44661953 44661953 C T ZNF234 Missense_Mutation p.P595L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 19 44739314 44739314 C T ZNF227 Missense_Mutation p.P244L 0.12 tolerated(0.69) benign(0.001) TCGA-EE-A3AA-06 19 44933267 44933267 C T ZNF229 Silent p.Q563Q 0.12 TCGA-EE-A3AA-06 19 44934670 44934670 T - ZNF229 Frame_Shift_Del p.R96Gfs*29 0.16 TCGA-EE-A3AA-06 19 45021226 45021226 C T CEACAM20 RNA 0.14 TCGA-EE-A3AA-06 19 45029134 45029134 C T CEACAM20 Intron 0.22 TCGA-EE-A3AA-06 19 4558105 4558105 C T SEMA6B Missense_Mutation p.E60K 0.18 tolerated(0.34) benign(0.399) TCGA-EE-A3AA-06 19 46307795 46307795 C T RSPH6A Silent p.K456K 0.12 TCGA-EE-A3AA-06 19 46375569 46375569 G A FOXA3 Silent p.G102G 0.29 TCGA-EE-A3AA-06 19 46623587 46623587 T A IGFL3 Nonstop_Mutation p.*126Yext*33 0.10 TCGA-EE-A3AA-06 19 47423618 47423618 C A ARHGAP35 Nonsense_Mutation p.C562* 0.08 TCGA-EE-A3AA-06 19 48342764 48342764 C T CRX Missense_Mutation p.P147L 0.16 tolerated(0.09) possibly_damaging(0.546) TCGA-EE-A3AA-06 19 48342765 48342765 C T CRX Silent p.P147P 0.15 TCGA-EE-A3AA-06 19 48878892 48878892 C T SYNGR4 Silent p.F118F 0.12 TCGA-EE-A3AA-06 19 48953670 48953670 C T GRWD1 Missense_Mutation p.P190L 0.12 deleterious(0.04) benign(0.021) TCGA-EE-A3AA-06 19 49248954 49248954 C T IZUMO1 Missense_Mutation p.E55K 0.12 tolerated(1) benign(0.003) TCGA-EE-A3AA-06 19 49341375 49341375 G A PLEKHA4 Missense_Mutation p.T659I 0.18 deleterious_low_confidence(0) benign(0.303) TCGA-EE-A3AA-06 19 49552088 49552088 G A CGB8 5'UTR 0.12 TCGA-EE-A3AA-06 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.16 TCGA-EE-A3AA-06 19 50498464 50498464 G A VRK3 Missense_Mutation p.H250Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 19 51135934 51135934 G A SYT3 Missense_Mutation p.P95S 0.23 tolerated(0.51) benign(0.001) TCGA-EE-A3AA-06 19 51274748 51274748 C T GPR32 Silent p.I297I 0.16 TCGA-EE-A3AA-06 19 51466790 51466790 G A KLK6 Silent p.F71F 0.15 TCGA-EE-A3AA-06 19 51532410 51532410 C T KLK12 3'Flank 0.16 TCGA-EE-A3AA-06 19 51628950 51628950 G A SIGLEC9 Missense_Mutation p.G173E 0.15 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A3AA-06 19 52023356 52023356 C T SIGLEC6 Missense_Mutation p.E448K 0.08 deleterious(0.02) possibly_damaging(0.666) TCGA-EE-A3AA-06 19 52147045 52147045 G A SIGLEC14 Silent p.I333I 0.11 TCGA-EE-A3AA-06 19 52376117 52376117 G A ZNF577 Missense_Mutation p.H376Y 0.09 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AA-06 19 52496057 52496057 G A ZNF615 3'UTR 0.09 TCGA-EE-A3AA-06 19 52869059 52869059 G A ZNF610 Missense_Mutation p.R143K 0.08 tolerated(0.25) benign(0.008) TCGA-EE-A3AA-06 19 52869061 52869061 A G ZNF610 Missense_Mutation p.K144E 0.08 tolerated(0.08) possibly_damaging(0.677) TCGA-EE-A3AA-06 19 53453516 53453516 A G ZNF816 Silent p.A504A 0.10 TCGA-EE-A3AA-06 19 53473546 53473546 C T ZNF702P RNA 0.22 TCGA-EE-A3AA-06 19 53741052 53741052 G A ZNF677 Nonsense_Mutation p.Q310* 0.08 TCGA-EE-A3AA-06 19 53741153 53741153 G A ZNF677 Missense_Mutation p.S276L 0.17 tolerated(0.06) benign(0.008) TCGA-EE-A3AA-06 19 53793465 53793465 G A BIRC8 Missense_Mutation p.P55S 0.14 deleterious(0.02) probably_damaging(0.941) TCGA-EE-A3AA-06 19 54245784 54245784 T C MIR520H RNA 0.09 TCGA-EE-A3AA-06 19 54313965 54313965 C T NLRP12 Silent p.E316E 0.17 TCGA-EE-A3AA-06 19 54445583 54445583 C T CACNG7 3'UTR 0.15 TCGA-EE-A3AA-06 19 54744754 54744754 G A LILRA6 Missense_Mutation p.S303F 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3AA-06 19 54760074 54760074 G A LILRB5 Missense_Mutation p.P163S 0.12 tolerated(1) benign(0.009) TCGA-EE-A3AA-06 19 54760177 54760177 G A LILRB5 Silent p.A128A 0.17 TCGA-EE-A3AA-06 19 54818742 54818742 C T LILRA5 Missense_Mutation p.D286N 0.13 tolerated(0.14) benign(0.191) TCGA-EE-A3AA-06 19 54823207 54823207 C T LILRA5 Silent p.G112G 0.18 TCGA-EE-A3AA-06 19 55106777 55106777 C T LILRA1 Missense_Mutation p.R191C 0.18 deleterious(0.03) benign(0.063) TCGA-EE-A3AA-06 19 55148000 55148000 C T LILRB1 Missense_Mutation p.S570F 0.15 deleterious(0.02) possibly_damaging(0.859) TCGA-EE-A3AA-06 19 55222142 55222142 C T AC098784.2 3'Flank 0.15 TCGA-EE-A3AA-06 19 55250975 55250975 C T KIR2DL3 Silent p.A19A 0.11 TCGA-EE-A3AA-06 19 55284794 55284794 G A KIR2DL1 Missense_Mutation p.R27K 0.14 tolerated(0.24) benign(0.01) TCGA-EE-A3AA-06 19 55401079 55401079 C T FCAR Silent p.L238L 0.13 TCGA-EE-A3AA-06 19 55589472 55589472 A C EPS8L1 Missense_Mutation p.K12Q 0.12 deleterious(0) possibly_damaging(0.701) TCGA-EE-A3AA-06 19 55686019 55686019 C T SYT5 Splice_Site p.X276_splice 0.11 TCGA-EE-A3AA-06 19 56321434 56321434 G A NLRP11 Missense_Mutation p.S181L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 19 56435345 56435345 C T NLRP13 Missense_Mutation p.G153E 0.15 tolerated(0.66) benign(0.004) TCGA-EE-A3AA-06 19 56467047 56467047 G A NLRP8 Silent p.L541L 0.15 TCGA-EE-A3AA-06 19 56545069 56545069 C T NLRP5 Missense_Mutation p.S870F 0.06 deleterious(0) probably_damaging(0.962) TCGA-EE-A3AA-06 19 56696603 56696603 G A GALP Missense_Mutation p.M105I 0.15 tolerated_low_confidence(0.08) benign(0) TCGA-EE-A3AA-06 19 57037166 57037166 G A ZNF471 Missense_Mutation p.G577E 0.17 deleterious(0.04) benign(0.093) TCGA-EE-A3AA-06 19 5744516 5744516 G A CATSPERD Missense_Mutation p.G218R 0.17 tolerated(0.48) benign(0.058) TCGA-EE-A3AA-06 19 57670544 57670544 C T DUXA Missense_Mutation p.E95K 0.12 tolerated(0.79) benign(0.011) TCGA-EE-A3AA-06 19 57670545 57670545 C T DUXA Silent p.V94V 0.11 TCGA-EE-A3AA-06 19 58153435 58153435 C T ZNF211 Silent p.H592H 0.18 TCGA-EE-A3AA-06 19 58419897 58419897 G A ZNF417 3'UTR 0.16 TCGA-EE-A3AA-06 19 58420681 58420681 C T ZNF417 Missense_Mutation p.R322K 0.08 tolerated(0.27) benign(0.049) TCGA-EE-A3AA-06 19 58485727 58485727 G A C19orf18 Missense_Mutation p.P25L 0.20 deleterious(0.04) benign(0.001) TCGA-EE-A3AA-06 19 58485728 58485728 G A C19orf18 Missense_Mutation p.P25S 0.20 tolerated(0.16) benign(0.052) TCGA-EE-A3AA-06 19 6694599 6694599 C T C3 Silent p.R999R 0.14 TCGA-EE-A3AA-06 19 6821681 6821681 A C VAV1 Silent p.R124R 0.15 TCGA-EE-A3AA-06 19 694959 694959 C T PRSS57 Missense_Mutation p.G31R 0.33 tolerated(0.07) benign(0.062) TCGA-EE-A3AA-06 19 7805456 7805456 G A CD209 3'UTR 0.21 TCGA-EE-A3AA-06 19 7998984 7998984 G A TIMM44 Missense_Mutation p.A178V 0.14 tolerated(0.08) benign(0.016) TCGA-EE-A3AA-06 19 8131007 8131007 G A FBN3 Silent p.V2742V 0.12 TCGA-EE-A3AA-06 19 8562714 8562714 C T PRAM1 Missense_Mutation p.E504K 0.10 deleterious(0.01) possibly_damaging(0.48) TCGA-EE-A3AA-06 19 8586485 8586485 G A MYO1F Missense_Mutation p.P1075L 0.13 deleterious(0.04) benign(0.048) TCGA-EE-A3AA-06 19 8609284 8609284 C T MYO1F Missense_Mutation p.G474E 0.23 deleterious(0) possibly_damaging(0.839) TCGA-EE-A3AA-06 19 8982296 8982296 G A MUC16 Silent p.D13993D 0.16 TCGA-EE-A3AA-06 19 8999484 8999484 C T MUC16 Missense_Mutation p.R13564K 0.13 probably_damaging(0.951) TCGA-EE-A3AA-06 19 9048281 9048281 G T MUC16 Missense_Mutation p.T11117N 0.18 benign(0.016) TCGA-EE-A3AA-06 19 9057123 9057123 C T MUC16 Missense_Mutation p.G10108E 0.21 benign(0.016) TCGA-EE-A3AA-06 19 9060263 9060263 C T MUC16 Silent p.V9061V 0.19 TCGA-EE-A3AA-06 19 9063627 9063627 C T MUC16 Missense_Mutation p.G7940E 0.11 unknown(0) TCGA-EE-A3AA-06 19 9065720 9065720 G A MUC16 Silent p.S7242S 0.16 TCGA-EE-A3AA-06 19 9067238 9067238 G A MUC16 Silent p.I6736I 0.16 TCGA-EE-A3AA-06 19 9067716 9067716 G A MUC16 Missense_Mutation p.S6577L 0.10 unknown(0) TCGA-EE-A3AA-06 19 9068223 9068223 C T MUC16 Missense_Mutation p.R6408K 0.09 unknown(0) TCGA-EE-A3AA-06 19 9068484 9068484 G A MUC16 Missense_Mutation p.P6321L 0.10 unknown(0) TCGA-EE-A3AA-06 19 9074140 9074140 G A MUC16 Missense_Mutation p.P4436S 0.11 unknown(0) TCGA-EE-A3AA-06 19 9074822 9074822 C T MUC16 Silent p.R4208R 0.11 TCGA-EE-A3AA-06 19 9088834 9088834 G A MUC16 Missense_Mutation p.A994V 0.18 unknown(0) TCGA-EE-A3AA-06 19 9226320 9226320 C T OR7G1 Silent p.L40L 0.17 TCGA-EE-A3AA-06 19 9271050 9271050 C T ZNF317 Silent p.I243I 0.13 TCGA-EE-A3AA-06 19 9577554 9577554 C T ZNF560 Missense_Mutation p.G690E 0.11 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A3AA-06 19 9640053 9640053 G A ZNF426 Missense_Mutation p.S223L 0.18 tolerated(0.2) benign(0.016) TCGA-EE-A3AA-06 19 9724727 9724727 C T ZNF561 Silent p.L98L 0.11 TCGA-EE-A3AA-06 19 9801922 9801922 C T ZNF812 Missense_Mutation p.G86E 0.09 tolerated(0.49) benign(0.107) TCGA-EE-A3AA-06 1 100203756 100203756 C A FRRS1 Missense_Mutation p.K215N 0.13 tolerated(0.34) benign(0.017) TCGA-EE-A3AA-06 1 100757014 100757014 A T RTCA Missense_Mutation p.Y365F 0.16 tolerated(0.58) benign(0.003) TCGA-EE-A3AA-06 1 102302440 102302440 C T OLFM3 Missense_Mutation p.E71K 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AA-06 1 110464543 110464543 G A CSF1 Silent p.K157K 0.15 TCGA-EE-A3AA-06 1 112319760 112319760 T C KCND3 Missense_Mutation p.K552E 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-EE-A3AA-06 1 114394720 114394720 G A PTPN22 Missense_Mutation p.P253S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 1 114449757 114449757 G A DCLRE1B Missense_Mutation p.G110E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 1 114483056 114483056 C T HIPK1 Silent p.A17A 0.06 TCGA-EE-A3AA-06 1 1149457 1149457 G A TNFRSF4 Silent p.L17L 0.22 TCGA-EE-A3AA-06 1 115142859 115142859 C T DENND2C Missense_Mutation p.E691K 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 1 115453021 115453021 G A SYCP1 Missense_Mutation p.E442K 0.14 tolerated(0.64) probably_damaging(0.92) TCGA-EE-A3AA-06 1 11574471 11574471 G A PTCHD2 Silent p.G447G 0.26 TCGA-EE-A3AA-06 1 11596417 11596417 G A PTCHD2 Missense_Mutation p.A1285T 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 1 117491913 117491913 C T PTGFRN Missense_Mutation p.P311L 0.14 tolerated(0.43) possibly_damaging(0.622) TCGA-EE-A3AA-06 1 117576597 117576597 G A CD101 Silent p.K980K 0.15 TCGA-EE-A3AA-06 1 117661046 117661046 G A TRIM45 Missense_Mutation p.R278W 0.08 deleterious(0) possibly_damaging(0.453) TCGA-EE-A3AA-06 1 119467332 119467332 C T TBX15 Missense_Mutation p.M104I 0.13 deleterious(0.01) possibly_damaging(0.598) TCGA-EE-A3AA-06 1 119935285 119935285 G A HAO2 Silent p.E325E 0.19 TCGA-EE-A3AA-06 1 12030738 12030738 C T PLOD1 Silent p.I589I 0.11 TCGA-EE-A3AA-06 1 120336763 120336763 G A REG4 3'UTR 0.18 TCGA-EE-A3AA-06 1 120438653 120438653 G A ADAM30 Missense_Mutation p.H103Y 0.17 tolerated(0.28) benign(0.016) TCGA-EE-A3AA-06 1 120928492 120928492 G A FCGR1B Intron 0.12 TCGA-EE-A3AA-06 1 12195669 12195669 C T TNFRSF8 Missense_Mutation p.T445M 0.19 tolerated(0.08) benign(0.107) TCGA-EE-A3AA-06 1 1222346 1222346 G A SCNN1D Silent p.G370G 0.18 TCGA-EE-A3AA-06 1 12785399 12785399 G A AADACL3 Silent p.L163L 0.28 TCGA-EE-A3AA-06 1 12819291 12819291 C T C1orf158 Missense_Mutation p.R92C 0.19 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AA-06 1 12835989 12835989 G A PRAMEF12 Silent p.L197L 0.11 TCGA-EE-A3AA-06 1 12907563 12907563 C T HNRNPCL1 Missense_Mutation p.V194M 0.09 deleterious(0.03) possibly_damaging(0.844) TCGA-EE-A3AA-06 1 12919613 12919613 G A PRAMEF2 Missense_Mutation p.G118E 0.20 tolerated(0.15) benign(0.006) TCGA-EE-A3AA-06 1 12919744 12919744 G A PRAMEF2 Missense_Mutation p.E162K 0.09 tolerated(0.19) possibly_damaging(0.876) TCGA-EE-A3AA-06 1 12921378 12921378 C T PRAMEF2 Missense_Mutation p.S390F 0.09 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A3AA-06 1 12943090 12943090 G A PRAMEF4 Silent p.F42F 0.15 TCGA-EE-A3AA-06 1 13001373 13001373 C T PRAMEF6 Missense_Mutation p.D104N 0.07 deleterious(0.02) possibly_damaging(0.843) TCGA-EE-A3AA-06 1 13716882 13716882 C T PRAMEF17 Silent p.S123S 0.12 TCGA-EE-A3AA-06 1 144867970 144867970 C T PDE4DIP Silent p.G1823G 0.14 TCGA-EE-A3AA-06 1 144879432 144879432 C T PDE4DIP Missense_Mutation p.E1340K 0.10 tolerated(0.31) benign(0.012) TCGA-EE-A3AA-06 1 147380201 147380201 C T GJA8 Missense_Mutation p.A40V 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 1 152058249 152058249 C T TCHHL1 Missense_Mutation p.G637S 0.15 tolerated(0.22) benign(0.346) TCGA-EE-A3AA-06 1 152059062 152059062 C T TCHHL1 Missense_Mutation p.E366K 0.22 tolerated(0.11) benign(0.068) TCGA-EE-A3AA-06 1 152281099 152281099 C T FLG Missense_Mutation p.G2088E 0.09 probably_damaging(0.931) TCGA-EE-A3AA-06 1 152285743 152285743 C T FLG Missense_Mutation p.G540E 0.22 possibly_damaging(0.573) TCGA-EE-A3AA-06 1 152287016 152287016 C T FLG Missense_Mutation p.E116K 0.13 benign(0.053) TCGA-EE-A3AA-06 1 152325478 152325478 C T FLG2 Missense_Mutation p.R1595Q 0.10 benign(0.07) TCGA-EE-A3AA-06 1 152586504 152586504 C T LCE3B Missense_Mutation p.S73F 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3AA-06 1 152636559 152636559 A C LCE2D Splice_Site 0.30 TCGA-EE-A3AA-06 1 152759921 152759921 G A LCE1E Missense_Mutation p.G49E 0.27 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AA-06 1 152975751 152975751 C T SPRR3 Silent p.V85V 0.25 TCGA-EE-A3AA-06 1 153084865 153084865 G A SPRR2F 3'UTR 0.31 TCGA-EE-A3AA-06 1 153276476 153276476 G A PGLYRP3 Missense_Mutation p.P129L 0.26 deleterious(0.01) possibly_damaging(0.558) TCGA-EE-A3AA-06 1 153430271 153430271 G A S100A7 3'UTR 0.16 TCGA-EE-A3AA-06 1 153516229 153516229 G A S100A4 3'UTR 0.17 TCGA-EE-A3AA-06 1 153615581 153615581 C T CHTOP Intron 0.21 TCGA-EE-A3AA-06 1 154461816 154461816 A G SHE Silent p.G245G 0.21 TCGA-EE-A3AA-06 1 155640148 155640148 G A YY1AP1 Missense_Mutation p.P369S 0.29 deleterious(0.03) possibly_damaging(0.721) TCGA-EE-A3AA-06 1 156555557 156555557 C T TTC24 Silent p.C503C 0.22 TCGA-EE-A3AA-06 1 156618425 156618425 G A BCAN Missense_Mutation p.E279K 0.27 tolerated(0.17) possibly_damaging(0.612) TCGA-EE-A3AA-06 1 156621399 156621399 C T BCAN Silent p.I405I 0.33 TCGA-EE-A3AA-06 1 156821913 156821913 G A INSRR Silent p.G236G 0.38 TCGA-EE-A3AA-06 1 156910002 156910002 C T ARHGEF11 Missense_Mutation p.D1244N 0.28 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 1 1572086 1572086 G A CDK11B Silent p.F628F 0.21 TCGA-EE-A3AA-06 1 158368669 158368669 T A OR10T2 Missense_Mutation p.K196N 0.22 tolerated(1) probably_damaging(0.982) TCGA-EE-A3AA-06 1 158390471 158390471 G A OR10K2 Silent p.F62F 0.34 TCGA-EE-A3AA-06 1 158516941 158516941 C T OR6Y1 Missense_Mutation p.G319R 0.19 tolerated(0.47) benign(0.002) TCGA-EE-A3AA-06 1 15892438 15892438 C T DNAJC16 Silent p.S541S 0.04 TCGA-EE-A3AA-06 1 159284007 159284007 C T OR10J3 Missense_Mutation p.G148E 0.13 deleterious(0.01) possibly_damaging(0.808) TCGA-EE-A3AA-06 1 159410383 159410383 G A OR10J1 Missense_Mutation p.E279K 0.29 deleterious(0.04) benign(0.011) TCGA-EE-A3AA-06 1 159558471 159558471 C T APCS Silent p.V215V 0.23 TCGA-EE-A3AA-06 1 159847181 159847181 C T CCDC19 Silent p.L372L 0.14 TCGA-EE-A3AA-06 1 159901284 159901284 G A IGSF9 Missense_Mutation p.A491V 0.22 tolerated(0.62) benign(0.014) TCGA-EE-A3AA-06 1 160793333 160793333 G A LY9 Missense_Mutation p.R526K 0.14 tolerated(0.22) benign(0.001) TCGA-EE-A3AA-06 1 16095092 16095092 C T FBLIM1 Missense_Mutation p.P170S 0.14 tolerated(0.14) probably_damaging(0.932) TCGA-EE-A3AA-06 1 161094247 161094247 C A DEDD Silent p.A2A 0.12 TCGA-EE-A3AA-06 1 16260429 16260429 C T SPEN Missense_Mutation p.A2565V 0.22 benign(0.146) TCGA-EE-A3AA-06 1 16559500 16559500 G A RSG1 Missense_Mutation p.T93I 0.13 deleterious(0) probably_damaging(0.965) TCGA-EE-A3AA-06 1 166961963 166961963 C T MAEL Silent p.S122S 0.16 TCGA-EE-A3AA-06 1 167517280 167517280 G T CREG1 Missense_Mutation p.P145T 0.12 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AA-06 1 167798662 167798662 C T ADCY10 Splice_Site p.X1198_splice 0.27 TCGA-EE-A3AA-06 1 169696641 169696641 A G SELE Silent p.V498V 0.08 TCGA-EE-A3AA-06 1 171174721 171174721 C T FMO2 Silent p.S377S 0.23 TCGA-EE-A3AA-06 1 171251294 171251294 C T FMO1 Silent p.F335F 0.19 TCGA-EE-A3AA-06 1 17316661 17316661 G A ATP13A2 Silent p.F791F 0.12 TCGA-EE-A3AA-06 1 175325582 175325582 G A TNR Silent p.I997I 0.27 TCGA-EE-A3AA-06 1 175372465 175372465 C T TNR Missense_Mutation p.E263K 0.28 tolerated(0.44) benign(0.001) TCGA-EE-A3AA-06 1 175372651 175372651 C T TNR Missense_Mutation p.E201K 0.26 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A3AA-06 1 177249609 177249609 C T BRINP2 Missense_Mutation p.P433S 0.12 tolerated(0.4) benign(0.039) TCGA-EE-A3AA-06 1 179084114 179084114 G A ABL2 Missense_Mutation p.P487L 0.22 deleterious(0) benign(0.181) TCGA-EE-A3AA-06 1 179587782 179587782 A G TDRD5 Missense_Mutation p.T294A 0.24 deleterious(0.01) possibly_damaging(0.702) TCGA-EE-A3AA-06 1 179599956 179599956 G A TDRD5 Missense_Mutation p.E343K 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3AA-06 1 181686297 181686297 G A CACNA1E Missense_Mutation p.E462K 0.13 deleterious(0.04) benign(0.292) TCGA-EE-A3AA-06 1 181719617 181719617 C T CACNA1E Missense_Mutation p.A1242V 0.21 tolerated(0.53) possibly_damaging(0.787) TCGA-EE-A3AA-06 1 181764139 181764139 C T CACNA1E Missense_Mutation p.S2056F 0.13 deleterious(0.03) possibly_damaging(0.828) TCGA-EE-A3AA-06 1 183190077 183190077 C T LAMC2 Silent p.I207I 0.08 TCGA-EE-A3AA-06 1 183519946 183519946 C T SMG7 Missense_Mutation p.S1019F 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3AA-06 1 184764988 184764988 C T FAM129A Missense_Mutation p.G637E 0.25 tolerated(1) benign(0.004) TCGA-EE-A3AA-06 1 18691827 18691827 C T IGSF21 Silent p.H217H 0.11 TCGA-EE-A3AA-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.23 tolerated(0.08) benign(0.001) TCGA-EE-A3AA-06 1 19062344 19062344 C T PAX7 Silent p.A458A 0.12 TCGA-EE-A3AA-06 1 19168344 19168344 G A TAS1R2 Silent p.I490I 0.14 TCGA-EE-A3AA-06 1 19652757 19652757 C T PQLC2 Missense_Mutation p.S134F 0.23 deleterious(0.02) benign(0.438) TCGA-EE-A3AA-06 1 196977706 196977706 G A CFHR5 Missense_Mutation p.D535N 0.28 deleterious(0.01) possibly_damaging(0.563) TCGA-EE-A3AA-06 1 197390624 197390624 C T CRB1 Silent p.L556L 0.11 TCGA-EE-A3AA-06 1 197390708 197390708 G A CRB1 Missense_Mutation p.D584N 0.20 deleterious(0.02) possibly_damaging(0.871) TCGA-EE-A3AA-06 1 197876332 197876332 T A C1orf53 Missense_Mutation p.N140K 0.15 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AA-06 1 200090020 200090020 C T NR5A2 Missense_Mutation p.R439C 0.18 deleterious(0.01) possibly_damaging(0.591) TCGA-EE-A3AA-06 1 203186021 203186021 T C CHIT1 Missense_Mutation p.N466S 0.12 tolerated(1) benign(0.005) TCGA-EE-A3AA-06 1 204125862 204125862 C T REN Missense_Mutation p.G254E 0.13 deleterious(0.01) possibly_damaging(0.9) TCGA-EE-A3AA-06 1 204425175 204425175 C T PIK3C2B Silent p.K584K 0.21 TCGA-EE-A3AA-06 1 20469973 20469973 G A PLA2G2F Silent p.L68L 0.08 TCGA-EE-A3AA-06 1 20499350 20499350 C T PLA2G2C Missense_Mutation p.E74K 0.10 tolerated(0.49) benign(0.338) TCGA-EE-A3AA-06 1 205497008 205497008 C T CDK18 Silent p.L302L 0.12 TCGA-EE-A3AA-06 1 205896728 205896728 C T SLC26A9 Missense_Mutation p.M369I 0.17 deleterious(0.03) benign(0.029) TCGA-EE-A3AA-06 1 206632142 206632142 C T SRGAP2 Missense_Mutation p.S808F 0.28 deleterious(0.02) benign(0.275) TCGA-EE-A3AA-06 1 211093211 211093211 C T KCNH1 Silent p.K411K 0.09 TCGA-EE-A3AA-06 1 21167511 21167511 T A EIF4G3 Missense_Mutation p.Q1250L 0.14 tolerated(0.09) benign(0.085) TCGA-EE-A3AA-06 1 21268607 21268607 G A EIF4G3 Missense_Mutation p.P297L 0.08 deleterious_low_confidence(0.01) benign(0.04) TCGA-EE-A3AA-06 1 213251135 213251135 C T RPS6KC1 Missense_Mutation p.P80L 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 1 21563260 21563260 G A ECE1 Silent p.T489T 0.07 TCGA-EE-A3AA-06 1 215901467 215901467 G A USH2A Missense_Mutation p.P3991S 0.12 probably_damaging(0.922) TCGA-EE-A3AA-06 1 222696098 222696098 T C HHIPL2 Missense_Mutation p.S674G 0.13 tolerated_low_confidence(0.23) benign(0.003) TCGA-EE-A3AA-06 1 223442007 223442007 G A SUSD4 Silent p.I124I 0.13 TCGA-EE-A3AA-06 1 227149142 227149142 C A ADCK3 Missense_Mutation p.T19N 0.15 deleterious_low_confidence(0.01) benign(0.197) TCGA-EE-A3AA-06 1 228467961 228467961 C T OBSCN Missense_Mutation p.S3011F 0.20 probably_damaging(0.999) TCGA-EE-A3AA-06 1 228492228 228492228 T G OBSCN Missense_Mutation p.C4743G 0.26 probably_damaging(1) TCGA-EE-A3AA-06 1 228505436 228505436 C T OBSCN Silent p.P5568P 0.27 TCGA-EE-A3AA-06 1 228509755 228509755 G A OBSCN Silent p.A6028A 0.50 TCGA-EE-A3AA-06 1 23111036 23111036 C T EPHB2 Missense_Mutation p.S93L 0.21 deleterious(0) possibly_damaging(0.475) TCGA-EE-A3AA-06 1 233802606 233802606 G A KCNK1 Silent p.E207E 0.09 TCGA-EE-A3AA-06 1 234367362 234367362 G A SLC35F3 Silent p.R161R 0.23 TCGA-EE-A3AA-06 1 240370649 240370649 C T FMN2 Missense_Mutation p.S846F 0.17 unknown(0) TCGA-EE-A3AA-06 1 241959637 241959637 G A WDR64 Missense_Mutation p.G1043R 0.28 deleterious(0.02) benign(0.033) TCGA-EE-A3AA-06 1 24413179 24413179 C T MYOM3 Missense_Mutation p.D585N 0.14 deleterious(0.02) possibly_damaging(0.904) TCGA-EE-A3AA-06 1 2452230 2452230 G A PANK4 Nonsense_Mutation p.Q180* 0.11 TCGA-EE-A3AA-06 1 247081627 247081627 G A AHCTF1 Missense_Mutation p.P25S 0.12 tolerated(0.09) probably_damaging(0.955) TCGA-EE-A3AA-06 1 247582349 247582349 G A NLRP3 Missense_Mutation p.E85K 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 1 247588501 247588501 C T NLRP3 Nonsense_Mutation p.Q586* 0.08 TCGA-EE-A3AA-06 1 248551607 248551607 G A OR2T6 Missense_Mutation p.G233E 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AA-06 1 248737443 248737443 G A OR2T34 Silent p.L206L 0.28 TCGA-EE-A3AA-06 1 248789896 248789896 G A OR2T11 Silent p.I178I 0.28 TCGA-EE-A3AA-06 1 248790161 248790161 G A OR2T11 Missense_Mutation p.S90F 0.22 deleterious(0.01) benign(0.008) TCGA-EE-A3AA-06 1 2537693 2537693 G A MMEL1 Silent p.I248I 0.11 TCGA-EE-A3AA-06 1 26515987 26515987 C T CNKSR1 Missense_Mutation p.S697F 0.10 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-EE-A3AA-06 1 27175149 27175149 C T ZDHHC18 Silent p.L183L 0.11 TCGA-EE-A3AA-06 1 32084964 32084964 C T HCRTR1 Silent p.F57F 0.11 TCGA-EE-A3AA-06 1 32742265 32742265 C T LCK Missense_Mutation p.S281F 0.23 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AA-06 1 33363812 33363812 A C TMEM54 Missense_Mutation p.V42G 0.08 deleterious(0) possibly_damaging(0.608) TCGA-EE-A3AA-06 1 33408031 33408031 G A RNF19B Missense_Mutation p.P479S 0.10 deleterious(0.02) benign(0.324) TCGA-EE-A3AA-06 1 34035099 34035099 C T CSMD2 Missense_Mutation p.G2671E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 1 34164413 34164413 C T CSMD2 Missense_Mutation p.E1249K 0.12 tolerated(0.62) benign(0.065) TCGA-EE-A3AA-06 1 34180320 34180320 C T CSMD2 Silent p.K1051K 0.10 TCGA-EE-A3AA-06 1 35260797 35260797 C T GJA4 Missense_Mutation p.S328F 0.13 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AA-06 1 38463199 38463199 C T FHL3 Missense_Mutation p.D241N 0.12 deleterious(0.05) probably_damaging(0.932) TCGA-EE-A3AA-06 1 43663257 43663257 C T WDR65 Missense_Mutation p.P386S 0.10 tolerated(0.69) benign(0.024) TCGA-EE-A3AA-06 1 45292283 45292283 G A PTCH2 Silent p.F951F 0.14 TCGA-EE-A3AA-06 1 46977718 46977718 C T DMBX1 Missense_Mutation p.S229F 0.12 tolerated(0.45) probably_damaging(0.945) TCGA-EE-A3AA-06 1 46978144 46978144 G A DMBX1 Missense_Mutation p.G371E 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AA-06 1 53558264 53558264 G A SLC1A7 Silent p.I331I 0.18 TCGA-EE-A3AA-06 1 54605385 54605385 C T CDCP2 Silent p.G386G 0.15 TCGA-EE-A3AA-06 1 57372418 57372418 G A C8A Missense_Mutation p.G392E 0.19 tolerated(0.11) probably_damaging(0.925) TCGA-EE-A3AA-06 1 57425727 57425727 G A C8B Missense_Mutation p.S72F 0.15 deleterious(0) possibly_damaging(0.823) TCGA-EE-A3AA-06 1 59004759 59004759 A T OMA1 Missense_Mutation p.F70I 0.22 tolerated_low_confidence(0.19) benign(0.031) TCGA-EE-A3AA-06 1 62293127 62293127 C T INADL Nonsense_Mutation p.R618* 0.08 TCGA-EE-A3AA-06 1 62393401 62393401 G A INADL Splice_Site p.X1191_splice 0.15 TCGA-EE-A3AA-06 1 62393404 62393404 G C INADL Missense_Mutation p.R1191S 0.12 tolerated(0.05) benign(0.24) TCGA-EE-A3AA-06 1 62582814 62582814 G A INADL Missense_Mutation p.G1605E 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 1 62626611 62626611 G A INADL 3'UTR 0.11 TCGA-EE-A3AA-06 1 6273140 6273140 C T RNF207 Missense_Mutation p.L517F 0.16 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AA-06 1 63955869 63955869 G A ITGB3BP Silent p.I62I 0.11 TCGA-EE-A3AA-06 1 64644176 64644176 C T ROR1 Missense_Mutation p.P818S 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 1 67356859 67356859 C T WDR78 Silent p.R207R 0.07 TCGA-EE-A3AA-06 1 68912415 68912415 C T RPE65 Missense_Mutation p.G75R 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 1 70509680 70509680 C T LRRC7 Missense_Mutation p.P1300L 0.14 tolerated(0.54) benign(0.004) TCGA-EE-A3AA-06 1 74929184 74929184 C T TNNI3K Missense_Mutation p.P792S 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3AA-06 1 74957900 74957900 C T TNNI3K Silent p.F868F 0.09 TCGA-EE-A3AA-06 1 76344743 76344743 G A MSH4 Missense_Mutation p.G536E 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 1 7995160 7995160 C T TNFRSF9 Missense_Mutation p.E153K 0.28 tolerated(0.27) benign(0.003) TCGA-EE-A3AA-06 1 85406603 85406603 G A MCOLN2 Silent p.L307L 0.23 TCGA-EE-A3AA-06 1 85499870 85499870 G A MCOLN3 Missense_Mutation p.S154F 0.11 tolerated(0.15) benign(0.281) TCGA-EE-A3AA-06 1 86375671 86375671 G A COL24A1 Missense_Mutation p.P878S 0.15 tolerated(0.06) probably_damaging(0.966) TCGA-EE-A3AA-06 1 87040384 87040384 C T CLCA4 Silent p.F543F 0.16 TCGA-EE-A3AA-06 1 9034764 9034764 G A CA6 3'Flank 0.23 TCGA-EE-A3AA-06 1 9078381 9078381 G A SLC2A7 Silent p.L164L 0.14 TCGA-EE-A3AA-06 1 94033370 94033370 G A BCAR3 Silent p.H671H 0.21 TCGA-EE-A3AA-06 1 94473280 94473280 C T ABCA4 Missense_Mutation p.G1972E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 1 94473802 94473802 G A ABCA4 Missense_Mutation p.R1963C 0.18 deleterious(0.01) possibly_damaging(0.677) TCGA-EE-A3AA-06 1 97771799 97771799 G A DPYD Missense_Mutation p.P705S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 10025082 10025082 G A ANKEF1 Missense_Mutation p.G196E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 10625538 10625538 C T JAG1 Missense_Mutation p.G773S 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 13107318 13107318 C T SPTLC3 Silent p.I411I 0.15 TCGA-EE-A3AA-06 20 14306382 14306382 C T FLRT3 Missense_Mutation p.E591K 0.15 tolerated(0.12) benign(0.277) TCGA-EE-A3AA-06 20 1514984 1514984 G A SIRPD 3'UTR 0.21 TCGA-EE-A3AA-06 20 17410135 17410135 G A PCSK2 Missense_Mutation p.G226R 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 18139899 18139899 G A CSRP2BP Silent p.L224L 0.13 TCGA-EE-A3AA-06 20 20056178 20056178 G A C20orf26 Missense_Mutation p.C162Y 0.16 tolerated(1) benign(0.004) TCGA-EE-A3AA-06 20 20232362 20232362 C T C20orf26 Silent p.I761I 0.16 TCGA-EE-A3AA-06 20 2308852 2308852 G A TGM3 Missense_Mutation p.E392K 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3AA-06 20 2308866 2308866 C T TGM3 Silent p.D396D 0.25 TCGA-EE-A3AA-06 20 2376066 2376066 C T TGM6 Silent p.F136F 0.12 TCGA-EE-A3AA-06 20 29965177 29965177 C T DEFB118 3'Flank 0.15 TCGA-EE-A3AA-06 20 30747905 30747905 G T TM9SF4 Silent p.L560L 0.11 TCGA-EE-A3AA-06 20 30753238 30753238 G A TM9SF4 Silent p.K640K 0.17 TCGA-EE-A3AA-06 20 30784252 30784252 G A PLAGL2 3'UTR 0.14 TCGA-EE-A3AA-06 20 3129384 3129384 G A FASTKD5 Silent p.S111S 0.12 TCGA-EE-A3AA-06 20 31395665 31395665 C T DNMT3B Nonsense_Mutation p.R840* 0.19 TCGA-EE-A3AA-06 20 31627282 31627282 C T BPIFB6 Missense_Mutation p.R344W 0.09 tolerated(0.11) benign(0.04) TCGA-EE-A3AA-06 20 31644491 31644491 G A BPIFB3 Missense_Mutation p.E90K 0.12 tolerated(0.11) benign(0.069) TCGA-EE-A3AA-06 20 3172440 3172440 G A DDRGK1 Silent p.L234L 0.24 TCGA-EE-A3AA-06 20 31827688 31827688 C T BPIFA1 Missense_Mutation p.P134S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 20 3193981 3193981 G A ITPA Silent p.G47G 0.15 TCGA-EE-A3AA-06 20 32332926 32332926 C T ZNF341 Missense_Mutation p.L54F 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AA-06 20 33026303 33026303 C T ITCH Silent p.D223D 0.11 TCGA-EE-A3AA-06 20 33364185 33364185 G A NCOA6 Missense_Mutation p.P101L 0.11 probably_damaging(0.998) TCGA-EE-A3AA-06 20 33364186 33364186 G A NCOA6 Missense_Mutation p.P101S 0.11 probably_damaging(0.969) TCGA-EE-A3AA-06 20 33533870 33533870 G A GSS Missense_Mutation p.P54L 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 35526915 35526915 C T SAMHD1 Silent p.K512K 0.13 TCGA-EE-A3AA-06 20 40126089 40126089 G A CHD6 Missense_Mutation p.R343C 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 40735493 40735493 C T PTPRT Missense_Mutation p.G1108E 0.21 deleterious(0.05) probably_damaging(1) TCGA-EE-A3AA-06 20 40944562 40944562 G A PTPRT Missense_Mutation p.S647L 0.16 deleterious(0.01) benign(0.163) TCGA-EE-A3AA-06 20 40980835 40980835 G A PTPRT Missense_Mutation p.H551Y 0.14 tolerated(0.1) possibly_damaging(0.741) TCGA-EE-A3AA-06 20 42682992 42682992 G A TOX2 Silent p.P235P 0.25 TCGA-EE-A3AA-06 20 43034848 43034848 G A HNF4A Missense_Mutation p.R89Q 0.20 deleterious(0.01) benign(0.026) TCGA-EE-A3AA-06 20 44815246 44815246 G A CDH22 Silent p.F548F 0.15 TCGA-EE-A3AA-06 20 45131407 45131407 T G ZNF334 Missense_Mutation p.N191H 0.11 tolerated(0.06) benign(0.137) TCGA-EE-A3AA-06 20 50407914 50407914 C T SALL4 Missense_Mutation p.D370N 0.10 deleterious(0) possibly_damaging(0.628) TCGA-EE-A3AA-06 20 51871244 51871244 G A TSHZ2 Missense_Mutation p.G416E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 51872148 51872148 C T TSHZ2 Silent p.S717S 0.09 TCGA-EE-A3AA-06 20 5283145 5283145 G A PROKR2 Silent p.F232F 0.14 TCGA-EE-A3AA-06 20 53260019 53260019 G A DOK5 Missense_Mutation p.R253Q 0.13 tolerated_low_confidence(0.16) benign(0.012) TCGA-EE-A3AA-06 20 54823928 54823928 T C MC3R Missense_Mutation p.V10A 0.16 tolerated(0.74) benign(0) TCGA-EE-A3AA-06 20 54941148 54941148 C T FAM210B Silent p.I128I 0.09 TCGA-EE-A3AA-06 20 55012399 55012399 G A CASS4 Silent p.T72T 0.27 TCGA-EE-A3AA-06 20 55027342 55027342 G A CASS4 Silent p.K370K 0.11 TCGA-EE-A3AA-06 20 55758884 55758884 C T BMP7 Silent p.T284T 0.15 TCGA-EE-A3AA-06 20 56191463 56191463 G A ZBP1 Silent p.A32A 0.13 TCGA-EE-A3AA-06 20 57009663 57009663 T C VAPB Silent p.L73L 0.15 TCGA-EE-A3AA-06 20 57599251 57599251 A G TUBB1 Missense_Mutation p.M257V 0.17 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-EE-A3AA-06 20 57610109 57610109 C T SLMO2 Missense_Mutation p.G180R 0.18 deleterious(0) benign(0.182) TCGA-EE-A3AA-06 20 57768659 57768659 C T ZNF831 Missense_Mutation p.P862L 0.14 tolerated(0.4) benign(0.007) TCGA-EE-A3AA-06 20 5843758 5843758 G A C20orf196 Silent p.K89K 0.13 TCGA-EE-A3AA-06 20 58547080 58547080 G A CDH26 Missense_Mutation p.E99K 0.25 deleterious(0.03) possibly_damaging(0.515) TCGA-EE-A3AA-06 20 58564020 58564020 G A CDH26 Missense_Mutation p.R362K 0.11 tolerated(0.36) benign(0.048) TCGA-EE-A3AA-06 20 58645794 58645794 G A C20orf197 Missense_Mutation p.G71E 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A3AA-06 20 5903799 5903799 G A CHGB Missense_Mutation p.E337K 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 20 60511930 60511930 G A CDH4 Missense_Mutation p.D894N 0.19 deleterious(0.02) possibly_damaging(0.527) TCGA-EE-A3AA-06 20 6088216 6088216 C T FERMT1 Missense_Mutation p.R271Q 0.12 deleterious(0) probably_damaging(0.97) TCGA-EE-A3AA-06 20 61341150 61341150 C T NTSR1 Silent p.A197A 0.20 TCGA-EE-A3AA-06 20 61341151 61341151 C T NTSR1 Silent p.L198L 0.20 TCGA-EE-A3AA-06 20 61956823 61956823 G A COL20A1 Missense_Mutation p.D1109N 0.17 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AA-06 20 62127379 62127379 C T EEF1A2 Missense_Mutation p.G52R 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EE-A3AA-06 20 62164989 62164989 C T PTK6 Silent p.R195R 0.12 TCGA-EE-A3AA-06 20 62421503 62421503 G A ZBTB46 Missense_Mutation p.P203L 0.21 tolerated(0.58) benign(0.272) TCGA-EE-A3AA-06 20 62664292 62664292 G T PRPF6 Missense_Mutation p.K924N 0.23 tolerated(0.27) benign(0.097) TCGA-EE-A3AA-06 20 861886 861886 C T ANGPT4 Silent p.E293E 0.12 TCGA-EE-A3AA-06 20 944609 944609 C T RSPO4 Silent p.R188R 0.10 TCGA-EE-A3AA-06 20 9546830 9546830 C T PAK7 Missense_Mutation p.A398T 0.11 tolerated(0.24) probably_damaging(0.989) TCGA-EE-A3AA-06 21 15537565 15537565 C T LIPI Missense_Mutation p.E315K 0.19 tolerated(0.76) benign(0.001) TCGA-EE-A3AA-06 21 19629128 19629128 C A CHODL Missense_Mutation p.Q128K 0.23 tolerated(1) benign(0.253) TCGA-EE-A3AA-06 21 22906900 22906900 G A NCAM2 Silent p.E775E 0.11 TCGA-EE-A3AA-06 21 27066102 27066102 C T JAM2 Silent p.F92F 0.09 TCGA-EE-A3AA-06 21 27852613 27852613 G A CYYR1 Silent p.I104I 0.12 TCGA-EE-A3AA-06 21 30949498 30949498 G A GRIK1 Missense_Mutation p.S639L 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 21 30971201 30971201 C T GRIK1 Silent p.R385R 0.14 TCGA-EE-A3AA-06 21 31538577 31538577 C T CLDN17 Missense_Mutation p.G120E 0.16 deleterious(0.01) possibly_damaging(0.817) TCGA-EE-A3AA-06 21 31538598 31538598 C T CLDN17 Missense_Mutation p.R113K 0.14 tolerated(0.38) benign(0.006) TCGA-EE-A3AA-06 21 31797785 31797785 G A KRTAP13-3 Missense_Mutation p.P149L 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3AA-06 21 32513747 32513747 G A TIAM1 Missense_Mutation p.S1184L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 21 35166652 35166652 G A ITSN1 Missense_Mutation p.R611K 0.23 tolerated(0.08) probably_damaging(0.935) TCGA-EE-A3AA-06 21 35206644 35206644 C T ITSN1 Missense_Mutation p.P1129S 0.12 deleterious(0.01) possibly_damaging(0.734) TCGA-EE-A3AA-06 21 35468343 35468343 C G SLC5A3 Missense_Mutation p.I282M 0.10 tolerated(0.06) probably_damaging(0.984) TCGA-EE-A3AA-06 21 39212969 39212969 C T KCNJ6 Missense_Mutation p.E6K 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A3AA-06 21 40670378 40670378 G A BRWD1 Missense_Mutation p.S110F 0.07 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AA-06 21 41385204 41385204 C T DSCAM Silent p.Q1932Q 0.18 TCGA-EE-A3AA-06 21 42615318 42615318 G A BACE2 Missense_Mutation p.E255K 0.14 deleterious(0.01) probably_damaging(0.949) TCGA-EE-A3AA-06 21 42647576 42647576 C T BACE2 3'UTR 0.15 TCGA-EE-A3AA-06 21 42775241 42775241 G A MX2 Missense_Mutation p.E541K 0.11 tolerated(0.43) possibly_damaging(0.733) TCGA-EE-A3AA-06 21 43510525 43510525 G A UMODL1 Missense_Mutation p.R303Q 0.12 tolerated(1) possibly_damaging(0.712) TCGA-EE-A3AA-06 21 44838334 44838334 G A SIK1 Missense_Mutation p.P517L 0.38 tolerated(0.55) benign(0.007) TCGA-EE-A3AA-06 21 45795835 45795835 G A TRPM2 Silent p.V297V 0.10 TCGA-EE-A3AA-06 21 45837845 45837845 A G TRPM2 Missense_Mutation p.Q1061R 0.11 tolerated(0.26) possibly_damaging(0.802) TCGA-EE-A3AA-06 21 46020592 46020592 C T KRTAP10-7 Missense_Mutation p.S24F 0.13 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A3AA-06 21 46086329 46086329 C T KRTAP12-2 3'UTR 0.24 TCGA-EE-A3AA-06 21 47412101 47412101 C T COL6A1 Silent p.P402P 0.16 TCGA-EE-A3AA-06 21 47545947 47545947 G A COL6A2 Missense_Mutation p.D740N 0.13 tolerated(0.17) benign(0.079) TCGA-EE-A3AA-06 22 17447178 17447178 G - GAB4 Frame_Shift_Del p.P367Lfs*6 0.10 TCGA-EE-A3AA-06 22 20819207 20819207 G A KLHL22 Silent p.F350F 0.11 TCGA-EE-A3AA-06 22 21989370 21989370 T C CCDC116 Silent p.L340L 0.23 TCGA-EE-A3AA-06 22 22730614 22730614 G A IGLV5-45 Missense_Mutation p.A37T 0.16 tolerated(0.05) benign(0.168) TCGA-EE-A3AA-06 22 23077529 23077529 G A IGLV2-18 Silent p.E102E 0.09 TCGA-EE-A3AA-06 22 25294504 25294504 C T SGSM1 Missense_Mutation p.S918F 0.10 deleterious(0.05) possibly_damaging(0.873) TCGA-EE-A3AA-06 22 25294505 25294505 T A SGSM1 Silent p.S918S 0.10 TCGA-EE-A3AA-06 22 25315900 25315900 T A SGSM1 Missense_Mutation p.Y1100N 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 22 25597420 25597420 C T CRYBB3 Silent p.D19D 0.13 TCGA-EE-A3AA-06 22 26164620 26164620 G A MYO18B Missense_Mutation p.G246E 0.29 tolerated_low_confidence(1) benign(0.009) TCGA-EE-A3AA-06 22 26239782 26239782 G A MYO18B Missense_Mutation p.D1097N 0.23 tolerated(0.15) possibly_damaging(0.534) TCGA-EE-A3AA-06 22 26422449 26422449 C T MYO18B Missense_Mutation p.S2170L 0.14 tolerated(0.32) benign(0.031) TCGA-EE-A3AA-06 22 26422898 26422898 C T MYO18B Missense_Mutation p.L2320F 0.13 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AA-06 22 26706646 26706646 C T SEZ6L Missense_Mutation p.H509Y 0.12 tolerated(1) benign(0.001) TCGA-EE-A3AA-06 22 26937078 26937078 G A TPST2 Silent p.F173F 0.17 TCGA-EE-A3AA-06 22 29444428 29444428 C T ZNRF3 Missense_Mutation p.P322S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 22 29628258 29628258 C T EMID1 Silent p.P230P 0.18 TCGA-EE-A3AA-06 22 30661125 30661125 G A OSM Missense_Mutation p.L15F 0.12 tolerated(0.06) benign(0.127) TCGA-EE-A3AA-06 22 30766800 30766800 G C CCDC157 Silent p.G302G 0.27 TCGA-EE-A3AA-06 22 30887678 30887678 C T SEC14L4 Silent p.K321K 0.19 TCGA-EE-A3AA-06 22 30951447 30951447 G A GAL3ST1 Silent p.F255F 0.19 TCGA-EE-A3AA-06 22 31533739 31533739 G A PLA2G3 Silent p.A341A 0.15 TCGA-EE-A3AA-06 22 31533740 31533740 G A PLA2G3 Missense_Mutation p.A341V 0.15 tolerated(0.39) benign(0.007) TCGA-EE-A3AA-06 22 31669481 31669481 C T LIMK2 Silent p.I513I 0.10 TCGA-EE-A3AA-06 22 32791048 32791048 G A RTCB Missense_Mutation p.P382S 0.09 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A3AA-06 22 35463173 35463173 C T ISX Silent p.F31F 0.29 TCGA-EE-A3AA-06 22 36116687 36116687 C T APOL5 Missense_Mutation p.P43L 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-EE-A3AA-06 22 36140261 36140261 G A RBFOX2 Silent p.A449A 0.13 TCGA-EE-A3AA-06 22 38229733 38229733 G A ANKRD54 Missense_Mutation p.P169S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 22 38565418 38565418 G A PLA2G6 Missense_Mutation p.R6C 0.15 deleterious(0) probably_damaging(0.931) TCGA-EE-A3AA-06 22 38565419 38565419 G A PLA2G6 Silent p.G5G 0.17 TCGA-EE-A3AA-06 22 39883514 39883515 CC T MGAT3 Frame_Shift_Del p.P55Rfs*99 0.10 TCGA-EE-A3AA-06 22 40030577 40030577 G A CACNA1I Silent p.R196R 0.21 TCGA-EE-A3AA-06 22 40045846 40045846 C T CACNA1I Silent p.I636I 0.13 TCGA-EE-A3AA-06 22 40415271 40415271 G A FAM83F Missense_Mutation p.D197N 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-EE-A3AA-06 22 40415903 40415903 C T FAM83F Missense_Mutation p.R224C 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 22 41252534 41252535 - G ST13 Frame_Shift_Ins p.R4Pfs*14 0.08 TCGA-EE-A3AA-06 22 41527608 41527608 C T EP300 Missense_Mutation p.P500L 0.14 unknown(0) TCGA-EE-A3AA-06 22 41864692 41864692 G A PHF5A 5'UTR 0.40 TCGA-EE-A3AA-06 22 43898546 43898546 G A MPPED1 Silent p.K257K 0.16 TCGA-EE-A3AA-06 22 44067858 44067858 G A EFCAB6 Silent p.F545F 0.11 TCGA-EE-A3AA-06 22 44277535 44277535 C T PNPLA5 Missense_Mutation p.D368N 0.22 deleterious(0.01) benign(0.091) TCGA-EE-A3AA-06 22 44893125 44893125 G A LDOC1L Silent p.P104P 0.36 TCGA-EE-A3AA-06 22 44893126 44893126 G A LDOC1L Missense_Mutation p.P104L 0.36 tolerated(0.09) probably_damaging(0.958) TCGA-EE-A3AA-06 22 45258246 45258246 C T PRR5-ARHGAP8 Missense_Mutation p.S568F 0.12 tolerated_low_confidence(0.24) benign(0.337) TCGA-EE-A3AA-06 22 45937144 45937144 C T FBLN1 Missense_Mutation p.P320S 0.11 tolerated(0.33) probably_damaging(0.96) TCGA-EE-A3AA-06 22 46640956 46640956 G A CDPF1 3'UTR 0.09 TCGA-EE-A3AA-06 22 46657627 46657627 C T PKDREJ Silent p.L531L 0.14 TCGA-EE-A3AA-06 22 50530480 50530480 G A MOV10L1 Missense_Mutation p.D50N 0.12 deleterious(0.04) probably_damaging(0.926) TCGA-EE-A3AA-06 22 50899591 50899591 G A SBF1 Silent p.F988F 0.29 TCGA-EE-A3AA-06 22 50900413 50900413 G A SBF1 Silent p.T844T 0.18 TCGA-EE-A3AA-06 2 101098740 101098740 C T NMS Missense_Mutation p.P139L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 102957191 102957191 G A IL1RL1 Silent p.V171V 0.10 TCGA-EE-A3AA-06 2 102992492 102992492 C T IL18R1 Silent p.I198I 0.21 TCGA-EE-A3AA-06 2 103274173 103274173 C T SLC9A2 Missense_Mutation p.P147L 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 2 103380863 103380863 C T TMEM182 Missense_Mutation p.S103L 0.19 tolerated(0.33) possibly_damaging(0.697) TCGA-EE-A3AA-06 2 110904405 110904405 C T NPHP1 Missense_Mutation p.G482D 0.10 deleterious(0.01) possibly_damaging(0.86) TCGA-EE-A3AA-06 2 113080360 113080360 C T ZC3H6 Silent p.P407P 0.09 TCGA-EE-A3AA-06 2 113321967 113321967 C T POLR1B Missense_Mutation p.P546L 0.12 tolerated(0.32) benign(0.001) TCGA-EE-A3AA-06 2 113999250 113999250 G A PAX8 Missense_Mutation p.P219S 0.25 tolerated(0.58) benign(0.001) TCGA-EE-A3AA-06 2 116283505 116283505 C T DPP10 Missense_Mutation p.S137L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 2 11706683 11706683 C T GREB1 Missense_Mutation p.L119F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 11955296 11955296 G A LPIN1 Missense_Mutation p.E827K 0.22 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AA-06 2 121747721 121747721 G A GLI2 Missense_Mutation p.E1411K 0.20 tolerated(0.07) benign(0.339) TCGA-EE-A3AA-06 2 121748187 121748187 G A GLI2 Missense_Mutation p.G1566E 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 128047394 128047394 G A ERCC3 Silent p.F176F 0.12 TCGA-EE-A3AA-06 2 128393813 128393813 G A MYO7B Missense_Mutation p.D1987N 0.14 tolerated(0.15) benign(0.015) TCGA-EE-A3AA-06 2 131487424 131487424 C T GPR148 Missense_Mutation p.L234F 0.14 tolerated(0.06) benign(0.148) TCGA-EE-A3AA-06 2 131798976 131798976 G A ARHGEF4 Silent p.K426K 0.24 TCGA-EE-A3AA-06 2 135743891 135743891 G A MAP3K19 Missense_Mutation p.P851S 0.10 tolerated(0.88) benign(0.164) TCGA-EE-A3AA-06 2 136545943 136545943 C T LCT Missense_Mutation p.G1912E 0.14 tolerated_low_confidence(0.79) benign(0.001) TCGA-EE-A3AA-06 2 136570170 136570170 G A LCT Silent p.S688S 0.16 TCGA-EE-A3AA-06 2 138000129 138000129 G A THSD7B Silent p.R751R 0.19 TCGA-EE-A3AA-06 2 138169266 138169266 C T THSD7B Missense_Mutation p.S928F 0.12 deleterious(0) possibly_damaging(0.683) TCGA-EE-A3AA-06 2 138378199 138378199 G A THSD7B Silent p.Q1237Q 0.21 TCGA-EE-A3AA-06 2 141143522 141143522 C T LRP1B Missense_Mutation p.D3491N 0.21 possibly_damaging(0.831) TCGA-EE-A3AA-06 2 1491699 1491699 C T TPO Silent p.S568S 0.14 TCGA-EE-A3AA-06 2 1491755 1491755 G A TPO Missense_Mutation p.G587E 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 149806389 149806389 G A KIF5C Missense_Mutation p.E251K 0.11 deleterious(0) probably_damaging(0.93) TCGA-EE-A3AA-06 2 152112232 152112232 G A RBM43 Missense_Mutation p.S10F 0.16 tolerated(0.2) benign(0.066) TCGA-EE-A3AA-06 2 152342309 152342309 C T NEB Missense_Mutation p.G8515R 0.08 probably_damaging(1) TCGA-EE-A3AA-06 2 152507377 152507377 C T NEB Missense_Mutation p.R2313Q 0.16 probably_damaging(0.994) TCGA-EE-A3AA-06 2 152522747 152522747 C T NEB Missense_Mutation p.D1630N 0.10 probably_damaging(0.988) TCGA-EE-A3AA-06 2 152548668 152548668 C T NEB Missense_Mutation p.D671N 0.09 benign(0.069) TCGA-EE-A3AA-06 2 158287384 158287384 C T CYTIP Missense_Mutation p.G124S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 2 160035431 160035431 C T TANC1 Missense_Mutation p.P756L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 16086192 16086192 G A MYCN Silent p.K456K 0.19 TCGA-EE-A3AA-06 2 166172225 166172225 G A SCN2A Missense_Mutation p.G543E 0.16 tolerated(0.11) possibly_damaging(0.844) TCGA-EE-A3AA-06 2 166900401 166900401 G A SCN1A Silent p.S607S 0.16 TCGA-EE-A3AA-06 2 168726259 168726259 C T B3GALT1 Missense_Mutation p.S237L 0.23 deleterious(0) probably_damaging(0.97) TCGA-EE-A3AA-06 2 169830229 169830229 C T ABCB11 Missense_Mutation p.G477E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 2 179248804 179248804 C T OSBPL6 Silent p.S663S 0.08 TCGA-EE-A3AA-06 2 179398597 179398597 C T TTN Missense_Mutation p.D34249N 0.13 TCGA-EE-A3AA-06 2 179440025 179440025 C T TTN Missense_Mutation p.G23612R 0.33 TCGA-EE-A3AA-06 2 179468943 179468943 T A TTN Missense_Mutation p.K18157N 0.12 TCGA-EE-A3AA-06 2 179486673 179486673 C T TTN Silent p.K14992K 0.36 TCGA-EE-A3AA-06 2 179569676 179569676 C T TTN Silent p.E9874E 0.07 TCGA-EE-A3AA-06 2 179584073 179584073 G A TTN Missense_Mutation p.S8015L 0.09 TCGA-EE-A3AA-06 2 179592939 179592939 G A TTN Silent p.L6538L 0.10 TCGA-EE-A3AA-06 2 179604553 179604553 C T TTN Silent p.L4469L 0.15 TCGA-EE-A3AA-06 2 179613203 179613203 C T TTN Intron 0.09 TCGA-EE-A3AA-06 2 179621485 179621485 C T TTN Missense_Mutation p.R3573K 0.11 TCGA-EE-A3AA-06 2 179633539 179633539 G A TTN Silent p.I3008I 0.17 TCGA-EE-A3AA-06 2 179640629 179640629 C T TTN Missense_Mutation p.E1988K 0.15 TCGA-EE-A3AA-06 2 179732833 179732833 C T CCDC141 Missense_Mutation p.E832K 0.19 deleterious(0.04) benign(0.202) TCGA-EE-A3AA-06 2 179733924 179733924 G A CCDC141 Missense_Mutation p.H772Y 0.12 deleterious(0.02) benign(0.192) TCGA-EE-A3AA-06 2 179733925 179733925 G A CCDC141 Silent p.F771F 0.13 TCGA-EE-A3AA-06 2 17997928 17997928 C T MSGN1 Missense_Mutation p.S48F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 2 182359477 182359477 C T ITGA4 Missense_Mutation p.S426L 0.10 tolerated(0.16) possibly_damaging(0.449) TCGA-EE-A3AA-06 2 182430228 182430228 C T CERKL Silent p.R229R 0.19 TCGA-EE-A3AA-06 2 189917648 189917648 G A COL5A2 Missense_Mutation p.P884S 0.17 unknown(0) TCGA-EE-A3AA-06 2 189929336 189929336 C T COL5A2 Missense_Mutation p.G555R 0.17 probably_damaging(1) TCGA-EE-A3AA-06 2 191900938 191900938 G A STAT4 Missense_Mutation p.R508C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 1926227 1926227 G A MYT1L Silent p.I438I 0.18 TCGA-EE-A3AA-06 2 1926913 1926913 T A MYT1L Nonsense_Mutation p.K210* 0.12 TCGA-EE-A3AA-06 2 196619118 196619118 G A DNAH7 Missense_Mutation p.L3903F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 2 196774764 196774764 C T DNAH7 Missense_Mutation p.G1364E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 2 196799407 196799407 G A DNAH7 Missense_Mutation p.L1127F 0.11 tolerated(0.49) probably_damaging(0.942) TCGA-EE-A3AA-06 2 198949938 198949938 G A PLCL1 Missense_Mutation p.R566Q 0.15 tolerated(0.97) benign(0.003) TCGA-EE-A3AA-06 2 201501681 201501681 C T AOX1 Silent p.C798C 0.19 TCGA-EE-A3AA-06 2 20205995 20205995 G A MATN3 Silent p.T100T 0.20 TCGA-EE-A3AA-06 2 202446852 202446852 C T ALS2CR11 Missense_Mutation p.G202E 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 206641084 206641084 C T NRP2 Intron 0.12 TCGA-EE-A3AA-06 2 207040918 207040918 C T GPR1 Missense_Mutation p.E352K 0.12 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 2 207171563 207171563 G A ZDBF2 Missense_Mutation p.G771R 0.17 tolerated(0.8) probably_damaging(0.99) TCGA-EE-A3AA-06 2 207172302 207172302 C T ZDBF2 Missense_Mutation p.A1017V 0.10 tolerated(0.14) possibly_damaging(0.827) TCGA-EE-A3AA-06 2 207175678 207175678 G A ZDBF2 Silent p.K2142K 0.14 TCGA-EE-A3AA-06 2 207426961 207426961 C T ADAM23 Missense_Mutation p.S430L 0.09 deleterious(0) possibly_damaging(0.821) TCGA-EE-A3AA-06 2 209215530 209215530 C T PIKFYVE Missense_Mutation p.L1824F 0.09 deleterious(0) benign(0.09) TCGA-EE-A3AA-06 2 211163245 211163245 G A MYL1 Missense_Mutation p.S68F 0.22 tolerated(0.1) possibly_damaging(0.878) TCGA-EE-A3AA-06 2 21224852 21224852 G A APOB Missense_Mutation p.A4481V 0.20 benign(0.005) TCGA-EE-A3AA-06 2 212252714 212252714 C T ERBB4 Missense_Mutation p.E1047K 0.10 tolerated(0.85) benign(0.001) TCGA-EE-A3AA-06 2 21228381 21228381 G C APOB Missense_Mutation p.P3787A 0.13 probably_damaging(0.996) TCGA-EE-A3AA-06 2 21231351 21231351 C T APOB Missense_Mutation p.G2797R 0.11 probably_damaging(0.999) TCGA-EE-A3AA-06 2 21232762 21232762 C T APOB Silent p.G2326G 0.07 TCGA-EE-A3AA-06 2 21234609 21234609 C T APOB Missense_Mutation p.G1711R 0.14 probably_damaging(0.945) TCGA-EE-A3AA-06 2 21234637 21234637 C T APOB Silent p.G1701G 0.09 TCGA-EE-A3AA-06 2 21234802 21234802 C T APOB Silent p.R1646R 0.14 TCGA-EE-A3AA-06 2 21237349 21237349 G A APOB Silent p.F1271F 0.08 TCGA-EE-A3AA-06 2 215821458 215821458 C T ABCA12 Silent p.A2054A 0.14 TCGA-EE-A3AA-06 2 215839503 215839503 G A ABCA12 Silent p.L1823L 0.12 TCGA-EE-A3AA-06 2 216251560 216251560 G A FN1 Silent p.F1488F 0.13 TCGA-EE-A3AA-06 2 217234625 217234625 C T MARCH4 Missense_Mutation p.G120D 0.11 tolerated_low_confidence(0.47) benign(0.005) TCGA-EE-A3AA-06 2 219508926 219508926 G A ZNF142 Silent p.S771S 0.11 TCGA-EE-A3AA-06 2 220285063 220285063 G A DES Missense_Mutation p.E244K 0.18 deleterious(0) benign(0.309) TCGA-EE-A3AA-06 2 220286089 220286089 G A DES Missense_Mutation p.E351K 0.16 deleterious(0) possibly_damaging(0.843) TCGA-EE-A3AA-06 2 220500098 220500098 G A SLC4A3 Missense_Mutation p.G645S 0.15 tolerated(0.3) possibly_damaging(0.895) TCGA-EE-A3AA-06 2 220504252 220504252 C T SLC4A3 Silent p.F1051F 0.19 TCGA-EE-A3AA-06 2 222347164 222347164 T A EPHA4 Missense_Mutation p.Y409F 0.15 deleterious(0) benign(0.096) TCGA-EE-A3AA-06 2 222347190 222347190 G A EPHA4 Silent p.I400I 0.08 TCGA-EE-A3AA-06 2 224463503 224463503 G A SCG2 Silent p.F166F 0.18 TCGA-EE-A3AA-06 2 225729299 225729299 G A DOCK10 Missense_Mutation p.P525S 0.16 deleterious(0) possibly_damaging(0.611) TCGA-EE-A3AA-06 2 226446710 226446710 C T NYAP2 Missense_Mutation p.P193S 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-EE-A3AA-06 2 228855857 228855857 C T SPHKAP Silent p.R1606R 0.19 TCGA-EE-A3AA-06 2 228855998 228855998 C T SPHKAP Missense_Mutation p.S1589N 0.08 tolerated(1) benign(0.004) TCGA-EE-A3AA-06 2 228882851 228882851 C T SPHKAP Missense_Mutation p.D907N 0.22 tolerated(0.32) benign(0.126) TCGA-EE-A3AA-06 2 230231825 230231825 C T DNER Nonsense_Mutation p.W622* 0.16 TCGA-EE-A3AA-06 2 231103033 231103033 T C SP140 Missense_Mutation p.F115L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 2 233393644 233393644 C T CHRND Silent p.P194P 0.22 TCGA-EE-A3AA-06 2 234079217 234079217 G A INPP5D Missense_Mutation p.E611K 0.13 deleterious(0) probably_damaging(0.92) TCGA-EE-A3AA-06 2 234091090 234091090 C T INPP5D Silent p.S690S 0.15 TCGA-EE-A3AA-06 2 241570128 241570128 G A GPR35 Silent p.T284T 0.13 TCGA-EE-A3AA-06 2 27521556 27521556 G A TRIM54 Missense_Mutation p.R97Q 0.15 deleterious(0.02) possibly_damaging(0.761) TCGA-EE-A3AA-06 2 27731106 27731106 G A GCKR Silent p.G470G 0.11 TCGA-EE-A3AA-06 2 29294236 29294236 G A C2orf71 Silent p.G964G 0.17 TCGA-EE-A3AA-06 2 29296693 29296693 C T C2orf71 Nonsense_Mutation p.W145* 0.11 TCGA-EE-A3AA-06 2 29940525 29940525 G A ALK Missense_Mutation p.P236S 0.12 tolerated_low_confidence(0.29) benign(0) TCGA-EE-A3AA-06 2 30976012 30976012 C T CAPN13 Missense_Mutation p.E332K 0.09 tolerated(0.13) benign(0.017) TCGA-EE-A3AA-06 2 31152266 31152266 G A GALNT14 Silent p.F387F 0.15 TCGA-EE-A3AA-06 2 31573083 31573083 C T XDH Missense_Mutation p.E880K 0.08 deleterious(0.01) possibly_damaging(0.482) TCGA-EE-A3AA-06 2 31604543 31604543 G A XDH Missense_Mutation p.P363L 0.19 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AA-06 2 32743456 32743456 C T BIRC6 Missense_Mutation p.P3829S 0.13 probably_damaging(0.943) TCGA-EE-A3AA-06 2 3595539 3595539 C T RNASEH1 Silent p.Q252Q 0.09 TCGA-EE-A3AA-06 2 44126743 44126743 T C LRPPRC Missense_Mutation p.N1191D 0.08 tolerated(0.14) benign(0.011) TCGA-EE-A3AA-06 2 46603782 46603782 G A EPAS1 Missense_Mutation p.G380E 0.19 tolerated(1) benign(0.04) TCGA-EE-A3AA-06 2 50280421 50280421 T G NRXN1 Missense_Mutation p.E1412D 0.13 tolerated_low_confidence(1) benign(0.007) TCGA-EE-A3AA-06 2 54483120 54483120 C T TSPYL6 Missense_Mutation p.E57K 0.14 deleterious(0.02) benign(0.223) TCGA-EE-A3AA-06 2 56419872 56419872 C T CCDC85A Silent p.G179G 0.11 TCGA-EE-A3AA-06 2 60688222 60688222 G A BCL11A Missense_Mutation p.P609S 0.09 tolerated(0.48) benign(0.168) TCGA-EE-A3AA-06 2 62067638 62067638 G A FAM161A Silent p.S167S 0.10 TCGA-EE-A3AA-06 2 68882534 68882534 G A PROKR1 Missense_Mutation p.M336I 0.09 tolerated(0.3) benign(0.005) TCGA-EE-A3AA-06 2 6990018 6990018 A G CMPK2 Missense_Mutation p.V438A 0.11 tolerated(0.11) probably_damaging(0.969) TCGA-EE-A3AA-06 2 6990019 6990019 C T CMPK2 Missense_Mutation p.V438I 0.10 deleterious(0.02) probably_damaging(0.942) TCGA-EE-A3AA-06 2 70392745 70392745 G A C2orf42 Silent p.F389F 0.09 TCGA-EE-A3AA-06 2 70918027 70918027 G A ADD2 Missense_Mutation p.S247F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 2 73799601 73799601 C T ALMS1 Nonsense_Mutation p.Q3532* 0.24 TCGA-EE-A3AA-06 2 74042632 74042632 C T C2orf78 Nonsense_Mutation p.Q428* 0.15 TCGA-EE-A3AA-06 2 74177794 74177794 C T DGUOK Missense_Mutation p.L176F 0.08 deleterious(0.05) probably_damaging(0.945) TCGA-EE-A3AA-06 2 74492235 74492235 G A SLC4A5 Silent p.I186I 0.16 TCGA-EE-A3AA-06 2 74605312 74605312 G A DCTN1 Missense_Mutation p.R32C 0.18 deleterious(0.02) probably_damaging(0.94) TCGA-EE-A3AA-06 2 74757769 74757769 C T HTRA2 Missense_Mutation p.P178S 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AA-06 2 80101412 80101412 G A CTNNA2 Missense_Mutation p.E266K 0.09 tolerated(0.74) benign(0.007) TCGA-EE-A3AA-06 2 80530036 80530036 C T LRRTM1 Nonsense_Mutation p.W303* 0.12 TCGA-EE-A3AA-06 2 80875044 80875044 C T CTNNA2 3'UTR 0.30 TCGA-EE-A3AA-06 2 84518174 84518174 T C FUNDC2P2 RNA 0.19 TCGA-EE-A3AA-06 2 85628968 85628968 C A CAPG Missense_Mutation p.D46Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AA-06 2 85779675 85779675 G A GGCX Missense_Mutation p.R435W 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AA-06 2 90122045 90122045 G A IGKV1D-17 Missense_Mutation p.G88E 0.12 deleterious(0.01) benign(0.414) TCGA-EE-A3AA-06 2 96781752 96781752 G A ADRA2B Missense_Mutation p.P46L 0.15 deleterious(0) possibly_damaging(0.542) TCGA-EE-A3AA-06 2 97526741 97526741 G A SEMA4C Silent p.P708P 0.12 TCGA-EE-A3AA-06 2 98355965 98355965 C T ZAP70 3'UTR 0.22 TCGA-EE-A3AA-06 2 98809361 98809361 G A VWA3B Silent p.R489R 0.11 TCGA-EE-A3AA-06 2 99008422 99008422 G A CNGA3 Missense_Mutation p.R221Q 0.17 tolerated(0.05) benign(0.252) TCGA-EE-A3AA-06 3 101044876 101044876 G A SENP7 Missense_Mutation p.P1022S 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AA-06 3 107097204 107097204 G A CCDC54 Missense_Mutation p.G257E 0.13 tolerated(0.13) benign(0.414) TCGA-EE-A3AA-06 3 108107868 108107868 G A MYH15 Silent p.A1848A 0.11 TCGA-EE-A3AA-06 3 108301837 108301837 G A KIAA1524 Missense_Mutation p.S115L 0.19 deleterious(0.01) benign(0.146) TCGA-EE-A3AA-06 3 108407695 108407695 C T DZIP3 Missense_Mutation p.P1147L 0.09 tolerated(0.07) possibly_damaging(0.826) TCGA-EE-A3AA-06 3 108677766 108677766 C T MORC1 3'UTR 0.15 TCGA-EE-A3AA-06 3 108723961 108723961 G A MORC1 Missense_Mutation p.P657S 0.11 tolerated(0.14) benign(0.03) TCGA-EE-A3AA-06 3 108751619 108751619 C T MORC1 Missense_Mutation p.E505K 0.12 deleterious(0.05) probably_damaging(0.932) TCGA-EE-A3AA-06 3 109049429 109049429 C T DPPA4 Silent p.A207A 0.12 TCGA-EE-A3AA-06 3 111604089 111604089 G A PHLDB2 Missense_Mutation p.E389K 0.22 deleterious(0.03) benign(0.06) TCGA-EE-A3AA-06 3 111852016 111852016 C T GCSAM 5'UTR 0.11 TCGA-EE-A3AA-06 3 112545857 112545857 G A CD200R1L Missense_Mutation p.S221F 0.09 tolerated(0.15) possibly_damaging(0.488) TCGA-EE-A3AA-06 3 113082150 113082150 C T WDR52 Missense_Mutation p.E926K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 3 113588364 113588364 C T GRAMD1C Missense_Mutation p.S62F 0.07 deleterious(0) benign(0.259) TCGA-EE-A3AA-06 3 113659148 113659148 C T GRAMD1C Missense_Mutation p.R622C 0.08 deleterious(0.01) possibly_damaging(0.518) TCGA-EE-A3AA-06 3 113679506 113679506 C T ZDHHC23 Intron 0.13 TCGA-EE-A3AA-06 3 114014392 114014392 G A TIGIT Missense_Mutation p.G21E 0.12 tolerated(0.08) benign(0.357) TCGA-EE-A3AA-06 3 11406164 11406164 C T ATG7 Missense_Mutation p.R611W 0.11 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A3AA-06 3 115395152 115395152 C T GAP43 Missense_Mutation p.P144L 0.20 deleterious(0) possibly_damaging(0.475) TCGA-EE-A3AA-06 3 119325719 119325719 C T PLA1A Missense_Mutation p.P58S 0.09 tolerated(0.57) benign(0.019) TCGA-EE-A3AA-06 3 120128462 120128462 G T FSTL1 Missense_Mutation p.Q127K 0.15 deleterious(0.02) benign(0.048) TCGA-EE-A3AA-06 3 120352175 120352175 C T HGD Missense_Mutation p.R336K 0.17 deleterious(0.01) benign(0.151) TCGA-EE-A3AA-06 3 120977918 120977918 C T STXBP5L Missense_Mutation p.P621S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 3 121304888 121304888 G A ARGFX Missense_Mutation p.R130Q 0.19 tolerated(0.1) possibly_damaging(0.696) TCGA-EE-A3AA-06 3 121980902 121980902 G A CASR Silent p.R340R 0.12 TCGA-EE-A3AA-06 3 122003591 122003591 G A CASR Silent p.Q940Q 0.39 TCGA-EE-A3AA-06 3 122044105 122044105 C T CSTA 5'UTR 0.17 TCGA-EE-A3AA-06 3 122642467 122642467 G A SEMA5B Silent p.F477F 0.13 TCGA-EE-A3AA-06 3 123345668 123345668 C T MYLK Nonsense_Mutation p.W1745* 0.09 TCGA-EE-A3AA-06 3 123385177 123385177 G A MYLK Silent p.I1240I 0.19 TCGA-EE-A3AA-06 3 123987691 123987691 C T KALRN Silent p.I184I 0.19 TCGA-EE-A3AA-06 3 124449234 124449234 G A UMPS 5'UTR 0.11 TCGA-EE-A3AA-06 3 12458442 12458442 C T PPARG Silent p.I353I 0.10 TCGA-EE-A3AA-06 3 126191014 126191014 G A ZXDC Missense_Mutation p.H348Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 3 1262377 1262377 G A CNTN6 Missense_Mutation p.G21D 0.08 tolerated(0.64) benign(0.001) TCGA-EE-A3AA-06 3 1262427 1262427 C T CNTN6 Missense_Mutation p.P38S 0.09 tolerated(0.14) benign(0.01) TCGA-EE-A3AA-06 3 126707643 126707643 C T PLXNA1 Silent p.N69N 0.12 TCGA-EE-A3AA-06 3 126915912 126915912 T C C3orf56 Silent p.F128F 0.10 TCGA-EE-A3AA-06 3 127325113 127325113 C T MCM2 Missense_Mutation p.R276C 0.10 deleterious(0) probably_damaging(0.915) TCGA-EE-A3AA-06 3 127411111 127411111 G A MGLL Missense_Mutation p.S291F 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A3AA-06 3 128690150 128690150 G A KIAA1257 Missense_Mutation p.A383V 0.17 tolerated(0.11) benign(0.063) TCGA-EE-A3AA-06 3 129221686 129221686 C T IFT122 Silent p.S887S 0.12 TCGA-EE-A3AA-06 3 130345371 130345371 C T COL6A6 Missense_Mutation p.P1641S 0.14 tolerated(0.31) benign(0.007) TCGA-EE-A3AA-06 3 131274340 131274340 C T CPNE4 Splice_Site p.X372_splice 0.13 TCGA-EE-A3AA-06 3 131624259 131624259 G A CPNE4 Missense_Mutation p.S10F 0.14 tolerated(0.12) probably_damaging(0.986) TCGA-EE-A3AA-06 3 132211430 132211430 C T DNAJC13 Missense_Mutation p.R1266W 0.08 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AA-06 3 138191578 138191578 G A ESYT3 Missense_Mutation p.R705K 0.17 tolerated(0.38) probably_damaging(0.986) TCGA-EE-A3AA-06 3 139237345 139237345 C T RBP1 Missense_Mutation p.G153E 0.10 tolerated(0.1) possibly_damaging(0.852) TCGA-EE-A3AA-06 3 139292486 139292486 C T NMNAT3 Silent p.Q73Q 0.18 TCGA-EE-A3AA-06 3 140409882 140409882 C T TRIM42 Missense_Mutation p.P645S 0.11 tolerated(0.45) benign(0.097) TCGA-EE-A3AA-06 3 140409883 140409883 C T TRIM42 Missense_Mutation p.P645L 0.13 deleterious(0.03) possibly_damaging(0.872) TCGA-EE-A3AA-06 3 142122526 142122526 G A XRN1 Missense_Mutation p.S698L 0.08 tolerated(0.16) benign(0.002) TCGA-EE-A3AA-06 3 142408621 142408621 G A PLS1 Silent p.P381P 0.18 TCGA-EE-A3AA-06 3 142423340 142423340 G A PLS1 Missense_Mutation p.G514D 0.20 tolerated(0.08) probably_damaging(0.94) TCGA-EE-A3AA-06 3 143185903 143185903 G A SLC9A9 Missense_Mutation p.P482L 0.15 tolerated(0.13) probably_damaging(0.958) TCGA-EE-A3AA-06 3 14487283 14487283 C T SLC6A6 Silent p.F96F 0.10 TCGA-EE-A3AA-06 3 149205542 149205542 G A TM4SF4 Missense_Mutation p.G134E 0.15 tolerated(0.06) probably_damaging(0.993) TCGA-EE-A3AA-06 3 151131073 151131073 G A MED12L Missense_Mutation p.R2061K 0.09 tolerated_low_confidence(0.74) benign(0.012) TCGA-EE-A3AA-06 3 151154752 151154752 G A IGSF10 Missense_Mutation p.R2533C 0.11 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AA-06 3 151171298 151171298 G T IGSF10 Missense_Mutation p.L197M 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 3 154884716 154884716 C T MME Silent p.P562P 0.12 TCGA-EE-A3AA-06 3 15512102 15512102 C T COLQ Missense_Mutation p.E220K 0.08 deleterious(0.03) unknown(0) TCGA-EE-A3AA-06 3 155200053 155200053 C T PLCH1 Silent p.S1262S 0.16 TCGA-EE-A3AA-06 3 155200482 155200482 C T PLCH1 Silent p.G1119G 0.10 TCGA-EE-A3AA-06 3 157296096 157296096 C T C3orf55 Intron 0.14 TCGA-EE-A3AA-06 3 164764689 164764689 C T SI Nonsense_Mutation p.W609* 0.13 TCGA-EE-A3AA-06 3 167159894 167159894 C T SERPINI2 3'UTR 0.13 TCGA-EE-A3AA-06 3 167183073 167183073 C T SERPINI2 Missense_Mutation p.E263K 0.14 deleterious(0) probably_damaging(0.954) TCGA-EE-A3AA-06 3 168834324 168834324 G A MECOM Missense_Mutation p.P323S 0.25 tolerated(0.33) probably_damaging(0.999) TCGA-EE-A3AA-06 3 168840516 168840516 C T MECOM Splice_Site p.X153_splice 0.10 TCGA-EE-A3AA-06 3 169656172 169656172 G A SAMD7 Missense_Mutation p.D407N 0.16 tolerated(0.13) benign(0.006) TCGA-EE-A3AA-06 3 170824477 170824477 G A TNIK Intron 0.17 TCGA-EE-A3AA-06 3 178968730 178968730 G A KCNMB3 Intron 0.11 TCGA-EE-A3AA-06 3 179501868 179501868 C T USP13 Missense_Mutation p.A844V 0.15 tolerated(1) possibly_damaging(0.868) TCGA-EE-A3AA-06 3 182872090 182872090 C T LAMP3 Missense_Mutation p.D47N 0.15 tolerated(0.41) benign(0.093) TCGA-EE-A3AA-06 3 183226039 183226039 C T KLHL6 Silent p.V239V 0.14 TCGA-EE-A3AA-06 3 184947266 184947266 G C EHHADH Silent p.L139L 0.19 TCGA-EE-A3AA-06 3 185226500 185226500 A C LIPH 3'UTR 0.17 TCGA-EE-A3AA-06 3 185332406 185332406 C T SENP2 Missense_Mutation p.R330C 0.06 tolerated(0.31) probably_damaging(0.991) TCGA-EE-A3AA-06 3 185364834 185364834 G A IGF2BP2 Silent p.I562I 0.12 TCGA-EE-A3AA-06 3 186362558 186362558 A T FETUB Missense_Mutation p.Y148F 0.08 tolerated(0.69) benign(0.003) TCGA-EE-A3AA-06 3 186760670 186760670 C T ST6GAL1 Missense_Mutation p.S60F 0.20 benign(0.003) TCGA-EE-A3AA-06 3 190120219 190120219 G A CLDN16 Missense_Mutation p.E140K 0.08 tolerated(0.06) possibly_damaging(0.756) TCGA-EE-A3AA-06 3 191861858 191861858 C T FGF12 Silent p.R224R 0.09 TCGA-EE-A3AA-06 3 191888290 191888290 C T FGF12 Silent p.K190K 0.16 TCGA-EE-A3AA-06 3 193120391 193120391 C T ATP13A4 3'UTR 0.21 TCGA-EE-A3AA-06 3 193120392 193120392 C T ATP13A4 3'UTR 0.25 TCGA-EE-A3AA-06 3 23996151 23996151 C T NR1D2 Missense_Mutation p.S47F 0.09 tolerated(0.62) possibly_damaging(0.831) TCGA-EE-A3AA-06 3 27758656 27758656 G A EOMES Missense_Mutation p.P656S 0.11 tolerated(0.24) benign(0.177) TCGA-EE-A3AA-06 3 33134462 33134462 G A TMPPE Missense_Mutation p.P409L 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 3 36779527 36779527 C T DCLK3 Silent p.R208R 0.08 TCGA-EE-A3AA-06 3 38061696 38061696 G A PLCD1 Missense_Mutation p.T82I 0.16 tolerated(0.14) benign(0.002) TCGA-EE-A3AA-06 3 38141900 38141900 G A DLEC1 Missense_Mutation p.E950K 0.12 tolerated(0.09) benign(0.382) TCGA-EE-A3AA-06 3 38760156 38760156 G A SCN10A Silent p.F1223F 0.09 TCGA-EE-A3AA-06 3 38888300 38888300 C T SCN11A Missense_Mutation p.G1754D 0.11 tolerated(0.56) probably_damaging(0.931) TCGA-EE-A3AA-06 3 38936098 38936098 C T SCN11A Missense_Mutation p.E921K 0.11 tolerated(0.3) benign(0.083) TCGA-EE-A3AA-06 3 38936173 38936173 C T SCN11A Missense_Mutation p.E896K 0.09 tolerated(0.39) benign(0.015) TCGA-EE-A3AA-06 3 38936224 38936224 C T SCN11A Missense_Mutation p.D879N 0.09 tolerated(0.23) possibly_damaging(0.832) TCGA-EE-A3AA-06 3 38968369 38968369 C T SCN11A Missense_Mutation p.R181K 0.13 deleterious(0.03) possibly_damaging(0.832) TCGA-EE-A3AA-06 3 39228494 39228494 G A XIRP1 Missense_Mutation p.P815S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 3 43381843 43381843 C T SNRK Missense_Mutation p.H266Y 0.09 deleterious(0.01) possibly_damaging(0.457) TCGA-EE-A3AA-06 3 44541239 44541239 G A ZNF852 Nonsense_Mutation p.R344* 0.12 TCGA-EE-A3AA-06 3 46569019 46569019 G A LRRC2 Missense_Mutation p.P276S 0.17 deleterious(0.03) benign(0.4) TCGA-EE-A3AA-06 3 47755909 47755909 C T SMARCC1 Nonsense_Mutation p.W263* 0.08 TCGA-EE-A3AA-06 3 49201288 49201288 G T CCDC71 Silent p.P118P 0.08 TCGA-EE-A3AA-06 3 49736246 49736246 C T RNF123 Missense_Mutation p.S210F 0.18 deleterious(0.02) possibly_damaging(0.83) TCGA-EE-A3AA-06 3 49740886 49740886 T A RNF123 Missense_Mutation p.Y593N 0.13 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AA-06 3 52398871 52398871 T A DNAH1 Missense_Mutation p.I1785N 0.23 probably_damaging(0.971) TCGA-EE-A3AA-06 3 52816987 52816987 C T ITIH1 Silent p.L315L 0.09 TCGA-EE-A3AA-06 3 53815622 53815622 C T CACNA1D Missense_Mutation p.R1594W 0.12 deleterious(0) possibly_damaging(0.797) TCGA-EE-A3AA-06 3 54913436 54913436 C T CACNA2D3 Silent p.F614F 0.21 TCGA-EE-A3AA-06 3 54914887 54914887 G A CACNA2D3 Missense_Mutation p.E637K 0.13 tolerated(0.05) benign(0.37) TCGA-EE-A3AA-06 3 54930717 54930717 C T CACNA2D3 Intron 0.16 TCGA-EE-A3AA-06 3 55107565 55107565 G A CACNA2D3 Missense_Mutation p.M1027I 0.11 tolerated(0.44) probably_damaging(0.943) TCGA-EE-A3AA-06 3 55504141 55504141 C T WNT5A Silent p.V374V 0.09 TCGA-EE-A3AA-06 3 56779371 56779371 G A ARHGEF3 Silent p.S276S 0.10 TCGA-EE-A3AA-06 3 58124041 58124041 G A FLNB Missense_Mutation p.E1663K 0.11 tolerated(0.06) possibly_damaging(0.603) TCGA-EE-A3AA-06 3 58619951 58619951 C T FAM3D 3'UTR 0.20 TCGA-EE-A3AA-06 3 58870302 58870302 G A C3orf67 Silent p.F103F 0.13 TCGA-EE-A3AA-06 3 62464030 62464030 G A CADPS Missense_Mutation p.R1079W 0.16 tolerated(0.13) possibly_damaging(0.689) TCGA-EE-A3AA-06 3 64527205 64527205 C T ADAMTS9 Silent p.L1763L 0.10 TCGA-EE-A3AA-06 3 98109976 98109976 C T OR5K3 Missense_Mutation p.P156L 0.13 tolerated(0.08) benign(0.014) TCGA-EE-A3AA-06 3 98189104 98189104 G A OR5K1 Missense_Mutation p.M228I 0.13 tolerated(0.08) probably_damaging(0.985) TCGA-EE-A3AA-06 4 100208132 100208132 C T ADH1A Missense_Mutation p.G45E 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AA-06 4 100263952 100263952 C T ADH1C Missense_Mutation p.M276I 0.12 benign(0.006) TCGA-EE-A3AA-06 4 113199097 113199097 G A TIFA Missense_Mutation p.P159L 0.08 deleterious(0) possibly_damaging(0.747) TCGA-EE-A3AA-06 4 113505138 113505138 C T C4orf21 Missense_Mutation p.V1432M 0.13 deleterious(0.02) possibly_damaging(0.812) TCGA-EE-A3AA-06 4 114275534 114275534 G A ANK2 Silent p.G1920G 0.26 TCGA-EE-A3AA-06 4 118976014 118976014 G A NDST3 Missense_Mutation p.E317K 0.15 tolerated(0.21) possibly_damaging(0.45) TCGA-EE-A3AA-06 4 121957922 121957922 C T NDNF Missense_Mutation p.E402K 0.11 tolerated(0.07) benign(0.288) TCGA-EE-A3AA-06 4 122301463 122301463 C T QRFPR Missense_Mutation p.G114S 0.16 deleterious(0) possibly_damaging(0.701) TCGA-EE-A3AA-06 4 123113460 123113460 T G KIAA1109 Silent p.P326P 0.15 TCGA-EE-A3AA-06 4 123255673 123255673 C T KIAA1109 Missense_Mutation p.P3941S 0.14 benign(0.004) TCGA-EE-A3AA-06 4 126240026 126240026 G A FAT4 Missense_Mutation p.M820I 0.15 benign(0.006) TCGA-EE-A3AA-06 4 128689927 128689927 G A SLC25A31 Silent p.K218K 0.12 TCGA-EE-A3AA-06 4 138449898 138449898 G A PCDH18 Missense_Mutation p.S855F 0.09 deleterious(0.03) possibly_damaging(0.635) TCGA-EE-A3AA-06 4 138453104 138453104 G A PCDH18 Silent p.L47L 0.17 TCGA-EE-A3AA-06 4 141323145 141323145 C T CLGN Silent p.L165L 0.19 TCGA-EE-A3AA-06 4 148453754 148453754 C T EDNRA Silent p.I215I 0.15 TCGA-EE-A3AA-06 4 151504524 151504524 G A MAB21L2 Missense_Mutation p.E115K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 4 154626229 154626229 C T TLR2 Missense_Mutation p.L724F 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 4 155505933 155505933 G A FGA Silent p.F648F 0.10 TCGA-EE-A3AA-06 4 155508759 155508759 C T FGA Missense_Mutation p.E139K 0.10 tolerated(0.12) benign(0.393) TCGA-EE-A3AA-06 4 156643314 156643314 G A GUCY1A3 Missense_Mutation p.R614Q 0.09 tolerated(0.08) possibly_damaging(0.817) TCGA-EE-A3AA-06 4 156775387 156775387 C T ASIC5 Missense_Mutation p.E143K 0.11 tolerated(0.66) benign(0.008) TCGA-EE-A3AA-06 4 157771494 157771494 G A PDGFC Missense_Mutation p.H65Y 0.12 tolerated(0.14) benign(0.006) TCGA-EE-A3AA-06 4 157771501 157771501 C T PDGFC Silent p.R62R 0.12 TCGA-EE-A3AA-06 4 159789515 159789515 C T FNIP2 Missense_Mutation p.P576L 0.08 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A3AA-06 4 165961679 165961679 G A TRIM60 Missense_Mutation p.R152K 0.09 tolerated(1) benign(0.001) TCGA-EE-A3AA-06 4 167656143 167656143 C T SPOCK3 Missense_Mutation p.E414K 0.18 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A3AA-06 4 175898763 175898763 G A ADAM29 Missense_Mutation p.R696Q 0.16 tolerated(0.29) benign(0.044) TCGA-EE-A3AA-06 4 177650846 177650846 C T VEGFC Missense_Mutation p.E68K 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 4 1806142 1806142 C T FGFR3 Silent p.I389I 0.10 TCGA-EE-A3AA-06 4 183713818 183713818 C G TENM3 Missense_Mutation p.P1998R 0.16 deleterious(0) probably_damaging(0.937) TCGA-EE-A3AA-06 4 187155171 187155171 T G KLKB1 Missense_Mutation p.V96G 0.10 deleterious(0) benign(0.405) TCGA-EE-A3AA-06 4 187158042 187158042 C T KLKB1 Missense_Mutation p.R146C 0.10 deleterious(0.01) possibly_damaging(0.711) TCGA-EE-A3AA-06 4 187197404 187197404 C T F11 Silent p.F205F 0.15 TCGA-EE-A3AA-06 4 1952827 1952827 C T WHSC1 Missense_Mutation p.S637L 0.12 tolerated(0.35) benign(0.002) TCGA-EE-A3AA-06 4 25677918 25677918 C G SLC34A2 Missense_Mutation p.I540M 0.17 tolerated(0.14) benign(0.018) TCGA-EE-A3AA-06 4 2746545 2746545 G A TNIP2 Missense_Mutation p.S262F 0.09 tolerated(0.24) benign(0.004) TCGA-EE-A3AA-06 4 2941319 2941319 C T NOP14 Silent p.R751R 0.14 TCGA-EE-A3AA-06 4 31144345 31144345 G A PCDH7 Silent p.E1214E 0.13 TCGA-EE-A3AA-06 4 38023281 38023281 C T TBC1D1 Silent p.A384A 0.29 TCGA-EE-A3AA-06 4 40778248 40778248 G T NSUN7 Missense_Mutation p.K336N 0.13 tolerated(0.12) benign(0.013) TCGA-EE-A3AA-06 4 41265263 41265263 C T UCHL1 Missense_Mutation p.H161Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 4 41648679 41648679 C T LIMCH1 Silent p.S478S 0.17 TCGA-EE-A3AA-06 4 42145918 42145918 G A BEND4 Missense_Mutation p.S194F 0.19 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-EE-A3AA-06 4 44176879 44176879 G A KCTD8 Silent p.I450I 0.12 TCGA-EE-A3AA-06 4 46305601 46305601 G A GABRA2 Silent p.F244F 0.18 TCGA-EE-A3AA-06 4 47912954 47912954 C T NFXL1 Missense_Mutation p.R98K 0.15 tolerated(1) benign(0) TCGA-EE-A3AA-06 4 48490715 48490715 G A SLC10A4 Missense_Mutation p.G358E 0.17 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AA-06 4 48550779 48550779 G A FRYL Missense_Mutation p.L1606F 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 4 509863 509863 C T PIGG Silent p.L335L 0.09 TCGA-EE-A3AA-06 4 52860873 52860873 G A LRRC66 Missense_Mutation p.P772L 0.16 tolerated(0.7) benign(0.001) TCGA-EE-A3AA-06 4 5812151 5812151 C T EVC Silent p.S956S 0.21 TCGA-EE-A3AA-06 4 6107556 6107556 C T JAKMIP1 Missense_Mutation p.G90R 0.11 tolerated(0.1) benign(0.093) TCGA-EE-A3AA-06 4 6304104 6304104 T G WFS1 Missense_Mutation p.V861G 0.10 deleterious(0.01) possibly_damaging(0.842) TCGA-EE-A3AA-06 4 65194254 65194254 G A TECRL Nonsense_Mutation p.R103* 0.10 TCGA-EE-A3AA-06 4 66286237 66286238 - T EPHA5 Frame_Shift_Ins p.N483Kfs*21 0.21 TCGA-EE-A3AA-06 4 68500023 68500023 G A UBA6 Silent p.S650S 0.13 TCGA-EE-A3AA-06 4 68725328 68725328 C T TMPRSS11D Missense_Mutation p.G26E 0.16 tolerated(0.08) benign(0.398) TCGA-EE-A3AA-06 4 69184272 69184272 G A YTHDC1 Missense_Mutation p.H597Y 0.11 tolerated(0.08) benign(0.056) TCGA-EE-A3AA-06 4 69796895 69796895 C T UGT2A3 Nonsense_Mutation p.W354* 0.12 TCGA-EE-A3AA-06 4 70346269 70346269 C T UGT2B4 3'UTR 0.18 TCGA-EE-A3AA-06 4 70361279 70361279 G A UGT2B4 Missense_Mutation p.P101S 0.15 tolerated(0.24) benign(0.035) TCGA-EE-A3AA-06 4 70465112 70465112 C T UGT2A1 Missense_Mutation p.G449E 0.09 deleterious(0.03) possibly_damaging(0.558) TCGA-EE-A3AA-06 4 71024390 71024390 G A C4orf40 Missense_Mutation p.A141T 0.11 tolerated(0.13) unknown(0) TCGA-EE-A3AA-06 4 71275270 71275270 C T PROL1 Silent p.F75F 0.09 TCGA-EE-A3AA-06 4 77230768 77230768 G A FAM47E-STBD1 Missense_Mutation p.G231E 0.13 tolerated(0.29) benign(0.149) TCGA-EE-A3AA-06 4 77670212 77670212 G A SHROOM3 Missense_Mutation p.D1266N 0.16 tolerated(0.08) benign(0.086) TCGA-EE-A3AA-06 4 7820863 7820863 G A AFAP1 Silent p.P254P 0.15 TCGA-EE-A3AA-06 4 80327744 80327744 C A GK2 Silent p.V537V 0.08 TCGA-EE-A3AA-06 4 84370062 84370062 T C HELQ Silent p.L355L 0.20 TCGA-EE-A3AA-06 4 85556427 85556427 C T CDS1 Missense_Mutation p.P245S 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A3AA-06 4 85711007 85711007 G A WDFY3 Missense_Mutation p.R1181C 0.09 deleterious(0) benign(0.24) TCGA-EE-A3AA-06 4 86844860 86844860 C A ARHGAP24 Missense_Mutation p.Q110K 0.16 deleterious(0.01) benign(0.023) TCGA-EE-A3AA-06 4 89574126 89574126 C T HERC3 Silent p.I190I 0.19 TCGA-EE-A3AA-06 4 94690479 94690479 G A GRID2 Missense_Mutation p.D827N 0.20 tolerated(0.2) possibly_damaging(0.636) TCGA-EE-A3AA-06 4 95197527 95197527 C T SMARCAD1 Silent p.L616L 0.10 TCGA-EE-A3AA-06 4 98902319 98902319 C T STPG2 Missense_Mutation p.E255K 0.08 tolerated(0.61) benign(0.009) TCGA-EE-A3AA-06 4 998089 998089 G A IDUA Missense_Mutation p.D624N 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AA-06 5 101774450 101774450 G A SLCO6A1 Missense_Mutation p.P383S 0.18 tolerated(0.06) probably_damaging(0.923) TCGA-EE-A3AA-06 5 101834509 101834509 C T SLCO6A1 Missense_Mutation p.E14K 0.09 tolerated(0.42) benign(0.025) TCGA-EE-A3AA-06 5 102260734 102260734 C T PAM Missense_Mutation p.R144W 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AA-06 5 1032302 1032302 C T NKD2 Silent p.F59F 0.17 TCGA-EE-A3AA-06 5 1032303 1032303 C T NKD2 Missense_Mutation p.R60W 0.16 tolerated(0.16) benign(0.015) TCGA-EE-A3AA-06 5 110819866 110819866 G A CAMK4 Missense_Mutation p.G375E 0.19 tolerated(0.38) benign(0.004) TCGA-EE-A3AA-06 5 114482989 114482989 C T TRIM36 Missense_Mutation p.R134Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 5 118483034 118483034 C T DMXL1 Missense_Mutation p.S927L 0.11 tolerated(0.17) benign(0.043) TCGA-EE-A3AA-06 5 118533521 118533521 C T DMXL1 Nonsense_Mutation p.R2539* 0.17 TCGA-EE-A3AA-06 5 120022361 120022361 C T PRR16 Missense_Mutation p.P268L 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AA-06 5 1213610 1213610 C T SLC6A19 Silent p.V232V 0.22 TCGA-EE-A3AA-06 5 121787002 121787002 G A SNCAIP Silent p.E820E 0.10 TCGA-EE-A3AA-06 5 125819252 125819252 C T GRAMD3 Missense_Mutation p.S293F 0.15 tolerated(0.73) possibly_damaging(0.898) TCGA-EE-A3AA-06 5 128863489 128863489 C T ADAMTS19 Missense_Mutation p.R373C 0.13 tolerated(0.09) probably_damaging(0.985) TCGA-EE-A3AA-06 5 128958002 128958002 C T ADAMTS19 Silent p.I571I 0.14 TCGA-EE-A3AA-06 5 128990081 128990081 T C ADAMTS19 Silent p.S747S 0.17 TCGA-EE-A3AA-06 5 129015484 129015484 T A ADAMTS19 Missense_Mutation p.I839N 0.21 deleterious(0) probably_damaging(0.965) TCGA-EE-A3AA-06 5 130791572 130791572 G A RAPGEF6 Missense_Mutation p.L1000F 0.17 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AA-06 5 134346174 134346174 G A CATSPER3 Missense_Mutation p.D350N 0.09 deleterious(0.04) benign(0.181) TCGA-EE-A3AA-06 5 135276722 135276722 C T FBXL21 RNA 0.11 TCGA-EE-A3AA-06 5 135587384 135587384 G C TRPC7 Missense_Mutation p.T511R 0.12 tolerated(0.17) benign(0.006) TCGA-EE-A3AA-06 5 13753442 13753442 C T DNAH5 Missense_Mutation p.G3591E 0.11 probably_damaging(0.982) TCGA-EE-A3AA-06 5 137593443 137593443 C T GFRA3 Missense_Mutation p.D224N 0.18 deleterious(0.05) probably_damaging(1) TCGA-EE-A3AA-06 5 13781040 13781040 C T DNAH5 Missense_Mutation p.G2950E 0.11 probably_damaging(0.982) TCGA-EE-A3AA-06 5 13871751 13871751 G A DNAH5 Missense_Mutation p.L1174F 0.12 possibly_damaging(0.587) TCGA-EE-A3AA-06 5 138858010 138858010 G A TMEM173 Missense_Mutation p.L202F 0.08 tolerated(0.94) benign(0.001) TCGA-EE-A3AA-06 5 13900441 13900441 G A DNAH5 Silent p.D711D 0.13 TCGA-EE-A3AA-06 5 13911601 13911601 C T DNAH5 Missense_Mutation p.G513D 0.13 benign(0.229) TCGA-EE-A3AA-06 5 139908062 139908062 C T ANKHD1 Missense_Mutation p.P1844L 0.10 probably_damaging(0.911) TCGA-EE-A3AA-06 5 140174900 140174900 C T PCDHA2 Silent p.F117F 0.09 TCGA-EE-A3AA-06 5 140186884 140186884 G A PCDHA4 Missense_Mutation p.E38K 0.11 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-EE-A3AA-06 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.23 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A3AA-06 5 140201568 140201568 C T PCDHA5 Missense_Mutation p.R70C 0.17 deleterious_low_confidence(0.01) benign(0.308) TCGA-EE-A3AA-06 5 140207721 140207721 C T PCDHA6 Silent p.L15L 0.09 TCGA-EE-A3AA-06 5 140208316 140208316 G A PCDHA6 Missense_Mutation p.A214T 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A3AA-06 5 140214166 140214166 G A PCDHA7 Silent p.A66A 0.13 TCGA-EE-A3AA-06 5 140214167 140214167 G A PCDHA7 Missense_Mutation p.V67M 0.12 deleterious_low_confidence(0.01) benign(0.438) TCGA-EE-A3AA-06 5 140221176 140221176 C T PCDHA8 Silent p.I90I 0.15 TCGA-EE-A3AA-06 5 140223219 140223219 C T PCDHA8 Silent p.A771A 0.13 TCGA-EE-A3AA-06 5 140249076 140249076 C T PCDHA11 Missense_Mutation p.P130S 0.18 deleterious_low_confidence(0.03) benign(0.111) TCGA-EE-A3AA-06 5 140250586 140250586 C T PCDHA11 Missense_Mutation p.T633M 0.08 deleterious_low_confidence(0.04) benign(0.418) TCGA-EE-A3AA-06 5 140264186 140264186 C T PCDHA13 Missense_Mutation p.P778L 0.12 deleterious_low_confidence(0.03) benign(0.012) TCGA-EE-A3AA-06 5 140475394 140475394 G A PCDHB2 Missense_Mutation p.M340I 0.09 tolerated_low_confidence(0.29) benign(0.005) TCGA-EE-A3AA-06 5 140480247 140480247 G A PCDHB3 Missense_Mutation p.G5E 0.11 tolerated_low_confidence(1) benign(0.046) TCGA-EE-A3AA-06 5 140480767 140480767 C T PCDHB3 Silent p.F178F 0.12 TCGA-EE-A3AA-06 5 140480965 140480965 G A PCDHB3 Silent p.Q244Q 0.17 TCGA-EE-A3AA-06 5 140503929 140503929 G A PCDHB4 Silent p.K783K 0.09 TCGA-EE-A3AA-06 5 140515917 140515917 C T PCDHB5 Missense_Mutation p.R301C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.751) TCGA-EE-A3AA-06 5 140531512 140531512 C T PCDHB6 Silent p.F558F 0.14 TCGA-EE-A3AA-06 5 140553675 140553675 C T PCDHB7 Missense_Mutation p.T420I 0.14 deleterious_low_confidence(0.01) benign(0.384) TCGA-EE-A3AA-06 5 140563942 140563942 C T PCDHB16 Missense_Mutation p.S603L 0.16 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A3AA-06 5 140625498 140625498 C T PCDHB15 Nonsense_Mutation p.R118* 0.15 TCGA-EE-A3AA-06 5 140724790 140724790 C T PCDHGA3 Missense_Mutation p.S397L 0.10 tolerated_low_confidence(0.11) benign(0.413) TCGA-EE-A3AA-06 5 140731171 140731171 C T PCDHGB1 Silent p.F448F 0.12 TCGA-EE-A3AA-06 5 140736083 140736083 C T PCDHGA4 Missense_Mutation p.S439L 0.14 tolerated_low_confidence(0.26) benign(0.139) TCGA-EE-A3AA-06 5 140736304 140736304 A C PCDHGA4 Missense_Mutation p.I513L 0.13 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-EE-A3AA-06 5 140745513 140745513 A G PCDHGA5 Missense_Mutation p.N539S 0.08 tolerated_low_confidence(0.19) benign(0.023) TCGA-EE-A3AA-06 5 140768738 140768738 C T PCDHGB4 Silent p.P429P 0.16 TCGA-EE-A3AA-06 5 140772815 140772815 C T PCDHGA8 Silent p.I145I 0.12 TCGA-EE-A3AA-06 5 140784346 140784346 C T PCDHGA9 Silent p.F609F 0.19 TCGA-EE-A3AA-06 5 140798397 140798397 G A PCDHGB7 Missense_Mutation p.R324Q 0.21 tolerated(0.06) possibly_damaging(0.768) TCGA-EE-A3AA-06 5 141059648 141059648 G A ARAP3 Missense_Mutation p.P136S 0.16 tolerated(0.3) benign(0.003) TCGA-EE-A3AA-06 5 14508315 14508315 C T TRIO Silent p.F3026F 0.13 TCGA-EE-A3AA-06 5 145442053 145442053 C T SH3RF2 Missense_Mutation p.P660L 0.15 tolerated(0.15) benign(0.013) TCGA-EE-A3AA-06 5 145524069 145524069 T G LARS Missense_Mutation p.K541Q 0.13 tolerated(0.29) benign(0.008) TCGA-EE-A3AA-06 5 148207326 148207326 T G ADRB2 Missense_Mutation p.L311R 0.10 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AA-06 5 149323966 149323966 C T PDE6A Missense_Mutation p.A91T 0.16 deleterious(0) possibly_damaging(0.489) TCGA-EE-A3AA-06 5 149324045 149324045 G A PDE6A Silent p.L64L 0.13 TCGA-EE-A3AA-06 5 150923884 150923884 G A FAT2 Silent p.N2268N 0.18 TCGA-EE-A3AA-06 5 151231166 151231166 C T GLRA1 Splice_Site p.X233_splice 0.14 TCGA-EE-A3AA-06 5 151784282 151784282 G A NMUR2 Silent p.F131F 0.15 TCGA-EE-A3AA-06 5 151784348 151784348 G A NMUR2 Silent p.N109N 0.21 TCGA-EE-A3AA-06 5 156533856 156533856 G A HAVCR2 Missense_Mutation p.P59L 0.15 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A3AA-06 5 156536072 156536072 C T HAVCR2 5'UTR 0.18 TCGA-EE-A3AA-06 5 156649894 156649894 G A ITK Missense_Mutation p.E173K 0.08 tolerated(0.67) benign(0.009) TCGA-EE-A3AA-06 5 156649985 156649985 G A ITK Missense_Mutation p.S203N 0.10 tolerated(0.26) benign(0.005) TCGA-EE-A3AA-06 5 158158114 158158114 A T EBF1 Missense_Mutation p.I363N 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 5 158743783 158743783 G A IL12B Silent p.I299I 0.10 TCGA-EE-A3AA-06 5 160033961 160033961 C T ATP10B Missense_Mutation p.V991I 0.13 tolerated(0.21) benign(0.014) TCGA-EE-A3AA-06 5 161576178 161576178 C T GABRG2 Silent p.V369V 0.21 TCGA-EE-A3AA-06 5 161580306 161580306 C T GABRG2 Missense_Mutation p.R494W 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 5 16779670 16779670 G A MYO10 Missense_Mutation p.S305F 0.10 deleterious(0.03) possibly_damaging(0.857) TCGA-EE-A3AA-06 5 168176556 168176556 C T SLIT3 Silent p.G686G 0.11 TCGA-EE-A3AA-06 5 169143223 169143223 C T DOCK2 Nonsense_Mutation p.Q650* 0.10 TCGA-EE-A3AA-06 5 169494644 169494644 G A DOCK2 Missense_Mutation p.G1533E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 5 174869097 174869097 C T DRD1 Missense_Mutation p.D336N 0.13 deleterious(0) probably_damaging(0.91) TCGA-EE-A3AA-06 5 177694308 177694308 C T COL23A1 Silent p.R174R 0.29 TCGA-EE-A3AA-06 5 177694309 177694309 C T COL23A1 Missense_Mutation p.R174Q 0.29 deleterious(0.05) unknown(0) TCGA-EE-A3AA-06 5 180377043 180377043 G A BTNL8 Silent p.Q334Q 0.45 TCGA-EE-A3AA-06 5 19747139 19747139 G A CDH18 Silent p.F145F 0.12 TCGA-EE-A3AA-06 5 23526672 23526672 G A PRDM9 Missense_Mutation p.R492K 0.14 tolerated(0.31) benign(0.425) TCGA-EE-A3AA-06 5 24488092 24488092 C T CDH10 Missense_Mutation p.E683K 0.10 tolerated(0.39) benign(0.025) TCGA-EE-A3AA-06 5 32061118 32061118 C T PDZD2 Nonsense_Mutation p.Q777* 0.11 TCGA-EE-A3AA-06 5 32739084 32739084 C T NPR3 Missense_Mutation p.S336F 0.11 deleterious(0) probably_damaging(0.978) TCGA-EE-A3AA-06 5 33546277 33546277 C T ADAMTS12 Missense_Mutation p.E1445K 0.11 tolerated(0.27) benign(0.036) TCGA-EE-A3AA-06 5 33576384 33576384 G A ADAMTS12 Silent p.L1249L 0.17 TCGA-EE-A3AA-06 5 33751618 33751618 G A ADAMTS12 Silent p.F175F 0.18 TCGA-EE-A3AA-06 5 35654685 35654685 G A SPEF2 Missense_Mutation p.D279N 0.11 tolerated(0.12) benign(0.196) TCGA-EE-A3AA-06 5 35807353 35807353 C T SPEF2 Missense_Mutation p.P1793S 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A3AA-06 5 35814644 35814644 G A SPEF2 Missense_Mutation p.E1820K 0.10 deleterious_low_confidence(0.01) benign(0.339) TCGA-EE-A3AA-06 5 35910527 35910527 T G CAPSL Silent p.R86R 0.18 TCGA-EE-A3AA-06 5 36269494 36269494 C T RANBP3L Missense_Mutation p.G89E 0.10 tolerated(0.19) benign(0.043) TCGA-EE-A3AA-06 5 38903999 38903999 C T OSMR Missense_Mutation p.P336L 0.12 deleterious(0) probably_damaging(0.928) TCGA-EE-A3AA-06 5 39153648 39153648 G A FYB Silent p.S408S 0.17 TCGA-EE-A3AA-06 5 41009457 41009457 C T MROH2B Silent p.G1115G 0.13 TCGA-EE-A3AA-06 5 41055945 41055945 G A MROH2B Missense_Mutation p.P311L 0.15 deleterious(0) benign(0.007) TCGA-EE-A3AA-06 5 41149355 41149355 C T C6 Missense_Mutation p.E871K 0.15 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AA-06 5 42718806 42718806 C T GHR Silent p.F399F 0.18 TCGA-EE-A3AA-06 5 42719644 42719644 G A GHR 3'UTR 0.33 TCGA-EE-A3AA-06 5 43533872 43533872 G A PAIP1 Missense_Mutation p.S407F 0.13 deleterious(0) possibly_damaging(0.663) TCGA-EE-A3AA-06 5 45262407 45262407 C T HCN1 Silent p.P763P 0.15 TCGA-EE-A3AA-06 5 52235711 52235711 C T ITGA1 Silent p.L1074L 0.11 TCGA-EE-A3AA-06 5 54277897 54277897 C T ESM1 Missense_Mutation p.G127R 0.14 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AA-06 5 54277969 54277969 G A ESM1 Missense_Mutation p.P103S 0.11 tolerated(0.05) benign(0.23) TCGA-EE-A3AA-06 5 58271613 58271613 G A PDE4D Silent p.L628L 0.19 TCGA-EE-A3AA-06 5 64084836 64084836 C T CWC27 Nonsense_Mutation p.R220* 0.12 TCGA-EE-A3AA-06 5 64483851 64483851 A C ADAMTS6 Missense_Mutation p.W968G 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 5 64629908 64629908 C T ADAMTS6 Missense_Mutation p.D360N 0.09 tolerated(0.07) possibly_damaging(0.571) TCGA-EE-A3AA-06 5 65459653 65459653 C T SREK1 Silent p.P263P 0.11 TCGA-EE-A3AA-06 5 70819988 70819988 T C BDP1 Silent p.A1870A 0.14 TCGA-EE-A3AA-06 5 72874889 72874889 G A UTP15 Silent p.K398K 0.12 TCGA-EE-A3AA-06 5 73160698 73160698 G A ARHGEF28 Splice_Site p.X701_splice 0.11 TCGA-EE-A3AA-06 5 73932025 73932025 C T ENC1 Missense_Mutation p.E96K 0.16 deleterious(0.03) possibly_damaging(0.672) TCGA-EE-A3AA-06 5 78373364 78373364 C T BHMT2 Missense_Mutation p.T32I 0.10 deleterious(0.02) possibly_damaging(0.694) TCGA-EE-A3AA-06 5 79027333 79027333 G A CMYA5 Silent p.E915E 0.14 TCGA-EE-A3AA-06 5 79031757 79031757 C T CMYA5 Missense_Mutation p.S2390L 0.14 benign(0.001) TCGA-EE-A3AA-06 5 79032011 79032011 G A CMYA5 Missense_Mutation p.E2475K 0.11 probably_damaging(0.956) TCGA-EE-A3AA-06 5 82400780 82400780 C T XRCC4 Silent p.P14P 0.14 TCGA-EE-A3AA-06 5 82808152 82808152 C T VCAN Missense_Mutation p.R327C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 5 87516402 87516402 G A TMEM161B Silent p.L142L 0.15 TCGA-EE-A3AA-06 5 90136683 90136683 C T GPR98 Nonsense_Mutation p.Q5634* 0.19 TCGA-EE-A3AA-06 5 92929486 92929486 C T NR2F1 Missense_Mutation p.R404C 0.16 tolerated(0.14) probably_damaging(0.983) TCGA-EE-A3AA-06 5 92929562 92929562 C T NR2F1 3'UTR 0.20 TCGA-EE-A3AA-06 5 94814122 94814122 G A TTC37 Nonsense_Mutation p.Q1413* 0.13 TCGA-EE-A3AA-06 5 94814123 94814123 G A TTC37 Silent p.S1412S 0.12 TCGA-EE-A3AA-06 5 95746478 95746478 G A PCSK1 Silent p.I365I 0.14 TCGA-EE-A3AA-06 5 96440917 96440917 C T LIX1 Missense_Mutation p.G154R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 5 96440918 96440918 C T LIX1 Missense_Mutation p.M153I 0.11 tolerated(0.31) benign(0) TCGA-EE-A3AA-06 5 96512855 96512855 G A RIOK2 Missense_Mutation p.R155C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 6 102069868 102069868 G A GRIK2 Missense_Mutation p.E54K 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 107003692 107003692 G A AIM1 Missense_Mutation p.E1471K 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 6 10995380 10995380 G A ELOVL2 Missense_Mutation p.S122F 0.18 deleterious(0) possibly_damaging(0.876) TCGA-EE-A3AA-06 6 110777668 110777668 C T SLC22A16 Intron 0.11 TCGA-EE-A3AA-06 6 116747768 116747768 C T DSE Missense_Mutation p.P150S 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AA-06 6 116756754 116756754 G A DSE Missense_Mutation p.D375N 0.09 tolerated(0.18) possibly_damaging(0.642) TCGA-EE-A3AA-06 6 116784674 116784674 C T FAM26F Missense_Mutation p.P252S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3AA-06 6 116784675 116784675 C T FAM26F Missense_Mutation p.P252L 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AA-06 6 117113477 117113477 G A GPRC6A Missense_Mutation p.S870L 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A3AA-06 6 117246613 117246613 C T RFX6 Intron 0.19 TCGA-EE-A3AA-06 6 12124188 12124188 C T HIVEP1 Missense_Mutation p.S1387L 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 6 123332168 123332168 C T CLVS2 Missense_Mutation p.S143F 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 6 127796726 127796726 C T SOGA3 Missense_Mutation p.M815I 0.11 deleterious(0.02) benign(0.108) TCGA-EE-A3AA-06 6 128150694 128150694 C T THEMIS Silent p.T212T 0.17 TCGA-EE-A3AA-06 6 129465092 129465092 C T LAMA2 Missense_Mutation p.S229F 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 129674373 129674373 G A LAMA2 Missense_Mutation p.D1530N 0.08 tolerated(0.77) benign(0.062) TCGA-EE-A3AA-06 6 129785560 129785560 C T LAMA2 Missense_Mutation p.S2373L 0.31 deleterious(0.03) benign(0.079) TCGA-EE-A3AA-06 6 129837342 129837342 C T LAMA2 Silent p.L3073L 0.11 TCGA-EE-A3AA-06 6 129927071 129927071 A C ARHGAP18 Missense_Mutation p.L439W 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 130476046 130476046 C T SAMD3 Missense_Mutation p.R316K 0.16 deleterious(0.01) benign(0.341) TCGA-EE-A3AA-06 6 130761868 130761868 G A TMEM200A Missense_Mutation p.E101K 0.18 tolerated(0.72) benign(0.037) TCGA-EE-A3AA-06 6 130762066 130762066 G A TMEM200A Missense_Mutation p.V167I 0.17 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AA-06 6 131277193 131277193 C T EPB41L2 Missense_Mutation p.E145K 0.18 tolerated(0.14) probably_damaging(0.965) TCGA-EE-A3AA-06 6 131277395 131277395 G A EPB41L2 Silent p.F77F 0.09 TCGA-EE-A3AA-06 6 131944520 131944520 G A MED23 Missense_Mutation p.R123W 0.09 deleterious(0) benign(0.379) TCGA-EE-A3AA-06 6 132939122 132939122 G A TAAR2 Missense_Mutation p.H75Y 0.23 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A3AA-06 6 134350155 134350155 G A SLC2A12 Missense_Mutation p.R270C 0.09 deleterious(0.04) benign(0.052) TCGA-EE-A3AA-06 6 13599261 13599261 C T SIRT5 Intron 0.10 TCGA-EE-A3AA-06 6 136888786 136888786 C T MAP3K5 Missense_Mutation p.M1248I 0.12 tolerated(0.1) benign(0.032) TCGA-EE-A3AA-06 6 137018478 137018478 T - MAP3K5 Frame_Shift_Del p.N285Ifs*19 0.16 TCGA-EE-A3AA-06 6 143091182 143091182 G A HIVEP2 Missense_Mutation p.S1565F 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 6 143093287 143093287 G A HIVEP2 Silent p.P863P 0.13 TCGA-EE-A3AA-06 6 150057737 150057737 G A NUP43 Silent p.L220L 0.19 TCGA-EE-A3AA-06 6 152457867 152457867 C T SYNE1 Silent p.K8515K 0.13 TCGA-EE-A3AA-06 6 152737990 152737990 T A SYNE1 Missense_Mutation p.E1861V 0.15 benign(0.02) TCGA-EE-A3AA-06 6 153043241 153043241 C T MYCT1 Silent p.L187L 0.17 TCGA-EE-A3AA-06 6 153073396 153073396 T G VIP Silent p.L28L 0.14 TCGA-EE-A3AA-06 6 157469899 157469899 G A ARID1B Missense_Mutation p.R898Q 0.18 probably_damaging(0.997) TCGA-EE-A3AA-06 6 159181674 159181674 G A SYTL3 Silent p.A437A 0.13 TCGA-EE-A3AA-06 6 159687229 159687229 C T FNDC1 Missense_Mutation p.L1800F 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 6 160237607 160237607 G A PNLDC1 Missense_Mutation p.D354N 0.19 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 6 161010726 161010726 G A LPA Missense_Mutation p.P1269L 0.20 tolerated(0.49) probably_damaging(1) TCGA-EE-A3AA-06 6 161010727 161010727 G A LPA Missense_Mutation p.P1269S 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3AA-06 6 161152219 161152219 C T PLG Missense_Mutation p.P465S 0.17 tolerated(0.2) benign(0.009) TCGA-EE-A3AA-06 6 161470424 161470424 C T MAP3K4 Missense_Mutation p.L374F 0.10 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A3AA-06 6 165746448 165746448 G A PDE10A 3'UTR 0.13 TCGA-EE-A3AA-06 6 168370476 168370476 C T MLLT4 Missense_Mutation p.S268L 0.11 tolerated_low_confidence(0.8) benign(0.001) TCGA-EE-A3AA-06 6 168430252 168430252 C T KIF25 5'UTR 0.10 TCGA-EE-A3AA-06 6 20402521 20402521 G A E2F3 Missense_Mutation p.E20K 0.10 tolerated_low_confidence(0.19) benign(0.292) TCGA-EE-A3AA-06 6 21198298 21198298 C T CDKAL1 Missense_Mutation p.S449F 0.06 deleterious(0) benign(0.436) TCGA-EE-A3AA-06 6 25727286 25727286 C T HIST1H2BA Silent p.V50V 0.09 TCGA-EE-A3AA-06 6 26107780 26107780 C T HIST1H1T Missense_Mutation p.S181N 0.08 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A3AA-06 6 26189104 26189104 G A HIST1H4D Silent p.I67I 0.18 TCGA-EE-A3AA-06 6 2685801 2685801 G A MYLK4 Silent p.F117F 0.07 TCGA-EE-A3AA-06 6 28213461 28213461 G A ZKSCAN4 Silent p.F357F 0.31 TCGA-EE-A3AA-06 6 28543161 28543161 C T SCAND3 Missense_Mutation p.E441K 0.24 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-EE-A3AA-06 6 29080168 29080168 C T OR2J3 Silent p.F167F 0.10 TCGA-EE-A3AA-06 6 29342165 29342165 C T OR12D3 Silent p.L300L 0.19 TCGA-EE-A3AA-06 6 29640372 29640373 GG A ZFP57 Frame_Shift_Del p.R507Gfs*10 0.10 TCGA-EE-A3AA-06 6 30043593 30043593 C T RNF39 5'UTR 0.21 TCGA-EE-A3AA-06 6 31544543 31544543 G A TNF Splice_Site p.X78_splice 0.22 TCGA-EE-A3AA-06 6 31617056 31617056 G A BAG6 Missense_Mutation p.P115S 0.06 tolerated(0.98) benign(0.046) TCGA-EE-A3AA-06 6 31779006 31779006 C T HSPA1L Silent p.K248K 0.07 TCGA-EE-A3AA-06 6 31901440 31901440 C T CFB Missense_Mutation p.R104C 0.23 deleterious(0.04) benign(0.385) TCGA-EE-A3AA-06 6 31926872 31926872 G A SKIV2L 5'UTR 0.27 TCGA-EE-A3AA-06 6 31930542 31930542 C T SKIV2L Silent p.I421I 0.27 TCGA-EE-A3AA-06 6 32017983 32017983 G A TNXB 5'Flank 0.10 TCGA-EE-A3AA-06 6 32046939 32046939 C T RNA5SP206 5'Flank 0.14 TCGA-EE-A3AA-06 6 32118227 32118227 G A PRRT1 Missense_Mutation p.P159L 0.29 deleterious_low_confidence(0.02) benign(0.022) TCGA-EE-A3AA-06 6 32178669 32178669 C T NOTCH4 Missense_Mutation p.D909N 0.11 tolerated(0.35) probably_damaging(1) TCGA-EE-A3AA-06 6 32782951 32782951 G A HLA-DOB Silent p.T77T 0.18 TCGA-EE-A3AA-06 6 32948364 32948364 G A BRD2 Missense_Mutation p.E794K 0.09 tolerated(0.22) benign(0.292) TCGA-EE-A3AA-06 6 35088743 35088743 C T TCP11 Missense_Mutation p.E233K 0.18 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AA-06 6 39159208 39159208 C T KCNK5 Missense_Mutation p.E320K 0.15 tolerated(0.38) benign(0.051) TCGA-EE-A3AA-06 6 4069785 4069785 C T FAM217A Silent p.L224L 0.08 TCGA-EE-A3AA-06 6 41002486 41002486 G A UNC5CL Missense_Mutation p.H110Y 0.13 deleterious(0.03) benign(0.063) TCGA-EE-A3AA-06 6 42236751 42236751 G A TRERF1 Missense_Mutation p.P193L 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.573) TCGA-EE-A3AA-06 6 43128564 43128564 C T PTK7 Missense_Mutation p.S1061F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 43475260 43475260 C T LRRC73 Missense_Mutation p.E272K 0.15 tolerated_low_confidence(0.86) benign(0.002) TCGA-EE-A3AA-06 6 46108078 46108078 C T ENPP4 Missense_Mutation p.S253F 0.20 tolerated(0.05) benign(0.191) TCGA-EE-A3AA-06 6 46826837 46826837 G A GPR116 Missense_Mutation p.P935S 0.10 tolerated(0.15) benign(0.186) TCGA-EE-A3AA-06 6 47647972 47647972 G A GPR111 Missense_Mutation p.V213I 0.08 tolerated(0.49) benign(0.006) TCGA-EE-A3AA-06 6 49586938 49586938 C T RHAG Missense_Mutation p.G99R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 49660564 49660564 C T CRISP2 Silent p.K218K 0.12 TCGA-EE-A3AA-06 6 51512847 51512847 A C PKHD1 Missense_Mutation p.S3794A 0.11 tolerated(0.14) benign(0.003) TCGA-EE-A3AA-06 6 52701057 52701057 C T GSTA5 Silent p.G83G 0.07 TCGA-EE-A3AA-06 6 53519959 53519959 C T KLHL31 Missense_Mutation p.E38K 0.15 tolerated_low_confidence(0.05) benign(0.073) TCGA-EE-A3AA-06 6 53767498 53767498 G A LRRC1 Missense_Mutation p.E287K 0.17 tolerated(0.32) benign(0.119) TCGA-EE-A3AA-06 6 54805003 54805003 C T FAM83B Missense_Mutation p.P412S 0.15 tolerated(0.56) benign(0.055) TCGA-EE-A3AA-06 6 54805191 54805191 C T FAM83B Silent p.I474I 0.18 TCGA-EE-A3AA-06 6 55147135 55147135 C T HCRTR2 Silent p.S406S 0.17 TCGA-EE-A3AA-06 6 55216156 55216156 G A GFRAL Missense_Mutation p.G159E 0.23 tolerated(0.1) possibly_damaging(0.759) TCGA-EE-A3AA-06 6 55223767 55223767 C T GFRAL Silent p.T261T 0.13 TCGA-EE-A3AA-06 6 55264195 55264195 G A GFRAL Missense_Mutation p.M359I 0.19 tolerated(0.35) benign(0.018) TCGA-EE-A3AA-06 6 56434769 56434769 A G DST Missense_Mutation p.F1965S 0.17 probably_damaging(0.999) TCGA-EE-A3AA-06 6 6305608 6305608 G A F13A1 Missense_Mutation p.L99F 0.20 tolerated(0.46) benign(0.001) TCGA-EE-A3AA-06 6 656326 656326 G A HUS1B Missense_Mutation p.L207F 0.08 tolerated(0.05) benign(0.058) TCGA-EE-A3AA-06 6 69943248 69943248 G A BAI3 Silent p.T849T 0.08 TCGA-EE-A3AA-06 6 70897794 70897794 C T COL19A1 Missense_Mutation p.P958S 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AA-06 6 70948986 70948986 C T COL9A1 Missense_Mutation p.D695N 0.21 probably_damaging(0.975) TCGA-EE-A3AA-06 6 71011744 71011744 G A COL9A1 Silent p.F16F 0.20 TCGA-EE-A3AA-06 6 72945352 72945352 G A RIMS1 Missense_Mutation p.G593E 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 6 73023298 73023298 C T RIMS1 Silent p.S1351S 0.25 TCGA-EE-A3AA-06 6 74229629 74229629 T A EEF1A1 Nonsense_Mutation p.K41* 0.10 TCGA-EE-A3AA-06 6 75811327 75811327 G A COL12A1 Missense_Mutation p.P2838S 0.16 benign(0.019) TCGA-EE-A3AA-06 6 83863287 83863287 C T DOPEY1 Missense_Mutation p.P2063S 0.09 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AA-06 6 84108219 84108219 C T ME1 Missense_Mutation p.D77N 0.10 tolerated(0.21) benign(0.007) TCGA-EE-A3AA-06 6 84234398 84234398 G A PRSS35 Missense_Mutation p.G413D 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 6 84371229 84371229 C T SNAP91 Silent p.V148V 0.09 TCGA-EE-A3AA-06 6 87725778 87725778 C T HTR1E Silent p.F242F 0.16 TCGA-EE-A3AA-06 6 88854696 88854696 C T CNR1 Missense_Mutation p.E100K 0.20 tolerated(0.72) benign(0.006) TCGA-EE-A3AA-06 6 89808325 89808325 C T SRSF12 Missense_Mutation p.R253Q 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.602) TCGA-EE-A3AA-06 6 96651274 96651274 C T FUT9 Silent p.S81S 0.16 TCGA-EE-A3AA-06 6 99848995 99848995 G A PNISR Silent p.S613S 0.09 TCGA-EE-A3AA-06 7 100014033 100014033 C T ZCWPW1 Missense_Mutation p.E176K 0.12 tolerated(0.26) benign(0.01) TCGA-EE-A3AA-06 7 100151107 100151107 C T AGFG2 Missense_Mutation p.A190V 0.21 tolerated(0.12) benign(0.104) TCGA-EE-A3AA-06 7 100198450 100198450 G A FBXO24 Nonsense_Mutation p.W595* 0.15 TCGA-EE-A3AA-06 7 100198451 100198451 G A FBXO24 Missense_Mutation p.E596K 0.17 deleterious_low_confidence(0.05) benign(0.292) TCGA-EE-A3AA-06 7 100229756 100229756 G A TFR2 Silent p.S305S 0.27 TCGA-EE-A3AA-06 7 100320696 100320696 T A EPO Missense_Mutation p.N174K 0.08 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AA-06 7 100685187 100685187 C T MUC17 Missense_Mutation p.S3497L 0.14 possibly_damaging(0.587) TCGA-EE-A3AA-06 7 102574604 102574604 G A LRRC17 Missense_Mutation p.D82N 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A3AA-06 7 103159895 103159895 G A RELN Silent p.F2579F 0.18 TCGA-EE-A3AA-06 7 103179742 103179742 C T RELN Silent p.T2321T 0.12 TCGA-EE-A3AA-06 7 103206802 103206802 G A RELN Missense_Mutation p.S1602F 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 7 103237104 103237104 C T RELN Missense_Mutation p.G1113E 0.13 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 7 105662885 105662885 G A CDHR3 Silent p.T689T 0.11 TCGA-EE-A3AA-06 7 107594168 107594168 G A LAMB1 Silent p.Y962Y 0.16 TCGA-EE-A3AA-06 7 107626521 107626521 G A LAMB1 Missense_Mutation p.R208C 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 7 107626714 107626714 G A LAMB1 Missense_Mutation p.S173L 0.11 tolerated(0.32) possibly_damaging(0.57) TCGA-EE-A3AA-06 7 107706844 107706844 C T LAMB4 Missense_Mutation p.G883E 0.14 tolerated(0.21) benign(0.16) TCGA-EE-A3AA-06 7 111368608 111368608 G A DOCK4 Missense_Mutation p.P1875S 0.09 tolerated_low_confidence(0.95) benign(0.018) TCGA-EE-A3AA-06 7 113518090 113518090 C T PPP1R3A Silent p.E1019E 0.13 TCGA-EE-A3AA-06 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.14 TCGA-EE-A3AA-06 7 113518307 113518307 G A PPP1R3A Missense_Mutation p.S947F 0.13 tolerated(0.07) benign(0.071) TCGA-EE-A3AA-06 7 113520032 113520032 C T PPP1R3A Missense_Mutation p.R372K 0.08 tolerated(0.16) benign(0.037) TCGA-EE-A3AA-06 7 114330005 114330005 G C FOXP2 3'UTR 0.18 TCGA-EE-A3AA-06 7 115596747 115596747 T G TFEC Missense_Mutation p.K123T 0.25 deleterious(0.01) benign(0.411) TCGA-EE-A3AA-06 7 11676471 11676471 T A THSD7A Missense_Mutation p.E103V 0.09 deleterious(0.05) benign(0.008) TCGA-EE-A3AA-06 7 119914668 119914668 C T KCND2 5'UTR 0.14 TCGA-EE-A3AA-06 7 120591176 120591176 C T ING3 Intron 0.24 TCGA-EE-A3AA-06 7 120935617 120935617 C T CPED1 Nonsense_Mutation p.R998* 0.29 TCGA-EE-A3AA-06 7 121612634 121612634 G A PTPRZ1 Missense_Mutation p.G115E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 7 122194651 122194651 G A CADPS2 Silent p.I476I 0.11 TCGA-EE-A3AA-06 7 122338165 122338165 G A RNF133 Missense_Mutation p.R270C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 7 123152079 123152079 C T IQUB Missense_Mutation p.D106N 0.09 tolerated(0.08) benign(0.001) TCGA-EE-A3AA-06 7 126883142 126883142 G A GRM8 Silent p.S39S 0.14 TCGA-EE-A3AA-06 7 128450282 128450282 G A CCDC136 Silent p.Q630Q 0.21 TCGA-EE-A3AA-06 7 129986407 129986407 C T CPA5 Silent p.I27I 0.33 TCGA-EE-A3AA-06 7 131195648 131195648 A G PODXL Silent p.S215S 0.12 TCGA-EE-A3AA-06 7 133861759 133861759 T C LRGUK Missense_Mutation p.F351L 0.06 deleterious(0) possibly_damaging(0.804) TCGA-EE-A3AA-06 7 133884016 133884016 C T LRGUK Silent p.I530I 0.18 TCGA-EE-A3AA-06 7 137151674 137151674 G A DGKI Intron 0.16 TCGA-EE-A3AA-06 7 138239558 138239558 C T TRIM24 Silent p.F459F 0.21 TCGA-EE-A3AA-06 7 138305866 138305866 C T SVOPL Silent p.T426T 0.22 TCGA-EE-A3AA-06 7 138444533 138444533 G A ATP6V0A4 Silent p.F201F 0.16 TCGA-EE-A3AA-06 7 140156574 140156574 G A MKRN1 Silent p.V288V 0.12 TCGA-EE-A3AA-06 7 140439656 140439656 C T BRAF Missense_Mutation p.E695K 0.17 deleterious(0) benign(0.284) TCGA-EE-A3AA-06 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.23 deleterious(0) benign(0.411) TCGA-EE-A3AA-06 7 141464517 141464517 C T TAS2R3 Silent p.L187L 0.32 TCGA-EE-A3AA-06 7 141630000 141630000 C T CLEC5A Silent p.Q157Q 0.22 TCGA-EE-A3AA-06 7 141797419 141797419 C T MGAM Silent p.F1677F 0.19 TCGA-EE-A3AA-06 7 142000791 142000791 G A TRBV2 5'UTR 0.18 TCGA-EE-A3AA-06 7 142162116 142162116 C G TRBV6-6 Missense_Mutation p.W53C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 7 142231600 142231600 G A TRBV10-1 Missense_Mutation p.S106F 0.20 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AA-06 7 142250851 142250851 G A TRBV6-4 Missense_Mutation p.H66Y 0.14 tolerated(0.75) benign(0.029) TCGA-EE-A3AA-06 7 142250852 142250852 G A TRBV6-4 Silent p.I65I 0.14 TCGA-EE-A3AA-06 7 142565365 142565365 G A EPHB6 Missense_Mutation p.E584K 0.13 tolerated(0.31) benign(0.211) TCGA-EE-A3AA-06 7 142723341 142723341 G A OR9A2 Silent p.V293V 0.28 TCGA-EE-A3AA-06 7 142881444 142881444 G A TAS2R39 Silent p.L311L 0.26 TCGA-EE-A3AA-06 7 143016847 143016847 G A CLCN1 Splice_Site p.X61_splice 0.18 TCGA-EE-A3AA-06 7 143079764 143079764 C T ZYX Missense_Mutation p.P163S 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 7 143421619 143421619 C T FAM115C Silent p.T778T 0.25 TCGA-EE-A3AA-06 7 143453518 143453518 C T CTAGE6 Missense_Mutation p.E412K 0.13 tolerated(1) benign(0.001) TCGA-EE-A3AA-06 7 143657068 143657068 G A OR2F1 Missense_Mutation p.G2E 0.18 tolerated(0.35) benign(0.011) TCGA-EE-A3AA-06 7 143657992 143657992 G A OR2F1 Missense_Mutation p.G310E 0.14 tolerated(0.27) benign(0.005) TCGA-EE-A3AA-06 7 143748358 143748358 G A OR2A5 Silent p.L288L 0.13 TCGA-EE-A3AA-06 7 143748373 143748373 G A OR2A5 Silent p.R293R 0.10 TCGA-EE-A3AA-06 7 143792644 143792644 G A OR2A12 Nonsense_Mutation p.W148* 0.11 TCGA-EE-A3AA-06 7 146825839 146825839 A T CNTNAP2 Missense_Mutation p.N332Y 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A3AA-06 7 147914561 147914561 C T CNTNAP2 Silent p.L1064L 0.24 TCGA-EE-A3AA-06 7 148112601 148112601 G A CNTNAP2 Missense_Mutation p.E1297K 0.17 deleterious(0) probably_damaging(0.941) TCGA-EE-A3AA-06 7 149498848 149498848 C T SSPO RNA 0.19 TCGA-EE-A3AA-06 7 150027532 150027532 G A ZBED6CL Silent p.L13L 0.22 TCGA-EE-A3AA-06 7 150163938 150163938 G A GIMAP8 Missense_Mutation p.R51K 0.10 tolerated(0.5) benign(0.011) TCGA-EE-A3AA-06 7 150174749 150174749 G A GIMAP8 Missense_Mutation p.E627K 0.14 tolerated(0.96) benign(0.001) TCGA-EE-A3AA-06 7 150269236 150269236 C T GIMAP4 Silent p.P26P 0.13 TCGA-EE-A3AA-06 7 150325208 150325208 G A GIMAP6 Silent p.L160L 0.16 TCGA-EE-A3AA-06 7 150417662 150417662 C T GIMAP1 Silent p.N190N 0.13 TCGA-EE-A3AA-06 7 150489176 150489176 G A TMEM176B Nonsense_Mutation p.R230* 0.23 TCGA-EE-A3AA-06 7 150649761 150649761 C T KCNH2 Missense_Mutation p.E437K 0.21 tolerated(0.1) benign(0.222) TCGA-EE-A3AA-06 7 150695451 150695451 G A NOS3 Missense_Mutation p.D197N 0.18 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AA-06 7 1516521 1516521 G A INTS1 Missense_Mutation p.P1658S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AA-06 7 156752864 156752864 C T NOM1 Missense_Mutation p.T543I 0.18 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AA-06 7 157341643 157341643 C T PTPRN2 Silent p.T991T 0.16 TCGA-EE-A3AA-06 7 157341681 157341681 C T PTPRN2 Missense_Mutation p.E979K 0.10 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AA-06 7 157997862 157997862 C T PTPRN2 Splice_Site p.X127_splice 0.15 TCGA-EE-A3AA-06 7 158439232 158439232 G A NCAPG2 Silent p.T1033T 0.14 TCGA-EE-A3AA-06 7 18688140 18688140 C T HDAC9 Missense_Mutation p.S434L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 7 18767250 18767250 T G HDAC9 Silent p.A593A 0.28 TCGA-EE-A3AA-06 7 20420329 20420329 C T ITGB8 Missense_Mutation p.H226Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 7 20725388 20725388 C T ABCB5 Missense_Mutation p.P647S 0.19 tolerated(0.85) benign(0.001) TCGA-EE-A3AA-06 7 21655869 21655869 C T DNAH11 Missense_Mutation p.H1352Y 0.10 benign(0.134) TCGA-EE-A3AA-06 7 23826481 23826481 G A STK31 Missense_Mutation p.V809I 0.14 tolerated(0.08) benign(0.391) TCGA-EE-A3AA-06 7 23826541 23826541 G A STK31 Missense_Mutation p.E829K 0.20 tolerated(0.14) possibly_damaging(0.515) TCGA-EE-A3AA-06 7 25181932 25181932 G A C7orf31 Silent p.P293P 0.19 TCGA-EE-A3AA-06 7 27186915 27186915 G A HOXA6 Intron 0.10 TCGA-EE-A3AA-06 7 27195938 27195938 G A HOXA7 Missense_Mutation p.A76V 0.17 tolerated(0.06) possibly_damaging(0.631) TCGA-EE-A3AA-06 7 30795141 30795141 C T INMT Missense_Mutation p.L156F 0.14 deleterious(0.01) benign(0.315) TCGA-EE-A3AA-06 7 31124405 31124405 C T ADCYAP1R1 Silent p.S164S 0.12 TCGA-EE-A3AA-06 7 31378675 31378675 C T NEUROD6 Missense_Mutation p.E70K 0.15 tolerated(0.1) benign(0.003) TCGA-EE-A3AA-06 7 31378687 31378687 C T NEUROD6 Missense_Mutation p.E66K 0.15 tolerated(0.66) possibly_damaging(0.636) TCGA-EE-A3AA-06 7 31862735 31862735 C T PDE1C Missense_Mutation p.E572K 0.18 tolerated(0.39) benign(0.024) TCGA-EE-A3AA-06 7 31862736 31862736 C T PDE1C Silent p.T571T 0.19 TCGA-EE-A3AA-06 7 33423343 33423343 C T BBS9 Missense_Mutation p.R619C 0.17 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 7 34094912 34094912 C T BMPER Silent p.F308F 0.13 TCGA-EE-A3AA-06 7 36570077 36570077 C G AOAH Missense_Mutation p.S490T 0.08 tolerated(0.45) benign(0.007) TCGA-EE-A3AA-06 7 38433665 38433665 G A AMPH Silent p.T516T 0.16 TCGA-EE-A3AA-06 7 41729952 41729952 C T INHBA Missense_Mutation p.E193K 0.24 tolerated(0.27) possibly_damaging(0.817) TCGA-EE-A3AA-06 7 44444178 44444178 G T NUDCD3 Nonsense_Mutation p.S216* 0.10 TCGA-EE-A3AA-06 7 5569211 5569211 G A ACTB Silent p.A26A 0.13 TCGA-EE-A3AA-06 7 56007624 56007624 C T ZNF713 Silent p.I406I 0.13 TCGA-EE-A3AA-06 7 56051436 56051436 C T GBAS Missense_Mutation p.R154C 0.11 deleterious(0.01) possibly_damaging(0.772) TCGA-EE-A3AA-06 7 5662452 5662452 C T RNF216 3'UTR 0.20 TCGA-EE-A3AA-06 7 72657511 72657511 C T GTF2IRD2P1 RNA 0.15 TCGA-EE-A3AA-06 7 7491972 7491972 C T COL28A1 Missense_Mutation p.G496E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 7 75517704 75517704 G A RHBDD2 3'UTR 0.29 TCGA-EE-A3AA-06 7 76825580 76825580 G A FGL2 3'UTR 0.13 TCGA-EE-A3AA-06 7 77256323 77256323 C T PTPN12 Missense_Mutation p.L443F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 7 77885668 77885668 A T MAGI2 Missense_Mutation p.Y547N 0.28 tolerated(0.3) probably_damaging(0.998) TCGA-EE-A3AA-06 7 81591325 81591325 C T CACNA2D1 Missense_Mutation p.D951N 0.09 deleterious(0.04) possibly_damaging(0.588) TCGA-EE-A3AA-06 7 82764399 82764399 G A PCLO Nonsense_Mutation p.R823* 0.16 TCGA-EE-A3AA-06 7 82784986 82784986 G A PCLO Missense_Mutation p.S324L 0.30 unknown(0) TCGA-EE-A3AA-06 7 82785102 82785102 C T PCLO Silent p.Q285Q 0.23 TCGA-EE-A3AA-06 7 82997054 82997054 C T SEMA3E Missense_Mutation p.E726K 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AA-06 7 82997079 82997079 G A SEMA3E Silent p.I717I 0.21 TCGA-EE-A3AA-06 7 86394421 86394421 C T GRM3 5'UTR 0.09 TCGA-EE-A3AA-06 7 87101970 87101970 C T ABCB4 Silent p.T34T 0.13 TCGA-EE-A3AA-06 7 8791023 8791023 G A NXPH1 Missense_Mutation p.G147E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 7 88963932 88963932 G A ZNF804B Missense_Mutation p.E546K 0.12 tolerated(0.21) possibly_damaging(0.637) TCGA-EE-A3AA-06 7 88966268 88966268 C T ZNF804B Silent p.C1324C 0.17 TCGA-EE-A3AA-06 7 91718711 91718711 C T AKAP9 Nonsense_Mutation p.Q3076* 0.11 TCGA-EE-A3AA-06 7 91936884 91936884 G T ANKIB1 Nonsense_Mutation p.E134* 0.18 TCGA-EE-A3AA-06 7 92734352 92734352 C T SAMD9 Silent p.T353T 0.25 TCGA-EE-A3AA-06 7 92734952 92734952 C T SAMD9 Silent p.R153R 0.23 TCGA-EE-A3AA-06 7 92763278 92763278 G A SAMD9L Silent p.I669I 0.23 TCGA-EE-A3AA-06 7 94178869 94178869 C A CASD1 Missense_Mutation p.L580I 0.18 tolerated(0.61) benign(0.007) TCGA-EE-A3AA-06 7 95664990 95664990 C T DYNC1I1 Silent p.F447F 0.19 TCGA-EE-A3AA-06 7 96651497 96651497 C T DLX5 Silent p.Q180Q 0.13 TCGA-EE-A3AA-06 7 97482666 97482666 C T ASNS Missense_Mutation p.R424Q 0.16 tolerated(1) benign(0.037) TCGA-EE-A3AA-06 7 97872887 97872887 G A TECPR1 Silent p.D183D 0.09 TCGA-EE-A3AA-06 7 99312297 99312297 G A CYP3A7 Missense_Mutation p.P227S 0.16 deleterious(0.02) benign(0.213) TCGA-EE-A3AA-06 7 99381714 99381714 C T CYP3A4 5'UTR 0.14 TCGA-EE-A3AA-06 7 99445257 99445257 T - CYP3A43 Intron 0.17 TCGA-EE-A3AA-06 7 99693651 99693651 G A MCM7 Silent p.F447F 0.17 TCGA-EE-A3AA-06 8 102381390 102381390 C T NACAP1 RNA 0.17 TCGA-EE-A3AA-06 8 103271215 103271215 G A UBR5 Missense_Mutation p.S2700L 0.20 deleterious(0) probably_damaging(0.952) TCGA-EE-A3AA-06 8 103307534 103307534 A T UBR5 Nonsense_Mutation p.L1319* 0.25 TCGA-EE-A3AA-06 8 10467464 10467464 C T RP1L1 Missense_Mutation p.E1382K 0.08 unknown(0) TCGA-EE-A3AA-06 8 104928669 104928669 G A RIMS2 Missense_Mutation p.R647K 0.33 tolerated_low_confidence(1) possibly_damaging(0.797) TCGA-EE-A3AA-06 8 105361478 105361478 G A DCSTAMP Missense_Mutation p.R233Q 0.10 deleterious(0.03) benign(0.077) TCGA-EE-A3AA-06 8 106815429 106815429 G A ZFPM2 Missense_Mutation p.G1040E 0.14 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A3AA-06 8 110131356 110131356 C T TRHR Missense_Mutation p.S290L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 8 110355767 110355767 A T ENY2 3'UTR 0.19 TCGA-EE-A3AA-06 8 110631156 110631156 C T SYBU Silent p.K114K 0.14 TCGA-EE-A3AA-06 8 113249569 113249569 C T CSMD3 Missense_Mutation p.D3493N 0.10 deleterious(0.03) benign(0.028) TCGA-EE-A3AA-06 8 116599617 116599617 C T TRPS1 Missense_Mutation p.E771K 0.07 deleterious_low_confidence(0) benign(0.442) TCGA-EE-A3AA-06 8 121239495 121239495 G A COL14A1 Missense_Mutation p.E681K 0.12 tolerated(0.36) benign(0.011) TCGA-EE-A3AA-06 8 124206335 124206335 C T FAM83A Silent p.I240I 0.11 TCGA-EE-A3AA-06 8 125094666 125094666 G A FER1L6 Missense_Mutation p.R1453Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 8 133984964 133984964 C T TG Silent p.P2059P 0.09 TCGA-EE-A3AA-06 8 134108506 134108506 C T TG Silent p.F2487F 0.09 TCGA-EE-A3AA-06 8 134125787 134125787 C T TG Missense_Mutation p.S2565F 0.37 deleterious(0) possibly_damaging(0.826) TCGA-EE-A3AA-06 8 135612555 135612555 G A ZFAT Intron 0.22 TCGA-EE-A3AA-06 8 139164725 139164725 C T FAM135B Missense_Mutation p.E665K 0.21 tolerated(0.13) possibly_damaging(0.678) TCGA-EE-A3AA-06 8 139207549 139207549 C T FAM135B Silent p.E275E 0.22 TCGA-EE-A3AA-06 8 142490441 142490441 C T MROH5 Intron 0.30 TCGA-EE-A3AA-06 8 144130625 144130625 G A C8orf31 Splice_Site p.X119_splice 0.22 TCGA-EE-A3AA-06 8 144808726 144808726 G A FAM83H Missense_Mutation p.L969F 0.23 deleterious(0.01) possibly_damaging(0.516) TCGA-EE-A3AA-06 8 145112601 145112601 A C OPLAH Missense_Mutation p.V391G 0.14 deleterious(0) probably_damaging(0.952) TCGA-EE-A3AA-06 8 17406292 17406292 G A SLC7A2 Missense_Mutation p.G253E 0.10 deleterious(0) probably_damaging(0.97) TCGA-EE-A3AA-06 8 17611335 17611335 C T MTUS1 Missense_Mutation p.R661K 0.09 tolerated(0.69) benign(0.019) TCGA-EE-A3AA-06 8 23049378 23049378 C T TNFRSF10A Silent p.L412L 0.11 TCGA-EE-A3AA-06 8 24167450 24167450 G A ADAM28 Missense_Mutation p.G65E 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AA-06 8 2813223 2813223 G A CSMD1 Silent p.F3294F 0.17 TCGA-EE-A3AA-06 8 2910116 2910116 C T CSMD1 Missense_Mutation p.E2510K 0.26 benign(0.388) TCGA-EE-A3AA-06 8 3256953 3256953 C T CSMD1 Missense_Mutation p.E789K 0.10 probably_damaging(0.978) TCGA-EE-A3AA-06 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.18 probably_damaging(0.912) TCGA-EE-A3AA-06 8 41397251 41397251 G A GINS4 Missense_Mutation p.E118K 0.09 deleterious(0.02) benign(0.125) TCGA-EE-A3AA-06 8 51569552 51569552 G A SNTG1 Silent p.R311R 0.11 TCGA-EE-A3AA-06 8 52320917 52320917 G A PXDNL Silent p.S1089S 0.17 TCGA-EE-A3AA-06 8 54141974 54141974 C T OPRK1 Silent p.R342R 0.12 TCGA-EE-A3AA-06 8 56015353 56015353 G A XKR4 Missense_Mutation p.R102K 0.19 tolerated(0.94) benign(0.054) TCGA-EE-A3AA-06 8 57213944 57213944 G A SDR16C5 3'UTR 0.24 TCGA-EE-A3AA-06 8 59536305 59536305 G A NSMAF Missense_Mutation p.P171L 0.11 tolerated(0.64) benign(0.039) TCGA-EE-A3AA-06 8 62430127 62430127 G A ASPH Missense_Mutation p.P696S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 8 6378783 6378783 C T ANGPT2 Missense_Mutation p.V239M 0.11 tolerated(0.18) benign(0.238) TCGA-EE-A3AA-06 8 63939816 63939816 A G GGH Missense_Mutation p.F95S 0.10 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AA-06 8 6479056 6479056 C T MCPH1 Missense_Mutation p.P766S 0.22 tolerated(0.13) probably_damaging(0.974) TCGA-EE-A3AA-06 8 6679433 6679433 G A XKR5 RNA 0.21 TCGA-EE-A3AA-06 8 66992626 66992626 C T DNAJC5B Silent p.I116I 0.28 TCGA-EE-A3AA-06 8 67047381 67047381 G A TRIM55 Silent p.Q166Q 0.13 TCGA-EE-A3AA-06 8 67786299 67786299 C T MCMDC2 5'UTR 0.09 TCGA-EE-A3AA-06 8 6912965 6912965 G A DEFA5 Silent p.L91L 0.14 TCGA-EE-A3AA-06 8 71068906 71068906 G A NCOA2 Missense_Mutation p.S565F 0.21 deleterious(0) possibly_damaging(0.871) TCGA-EE-A3AA-06 8 73479927 73479927 C T KCNB2 5'UTR 0.17 TCGA-EE-A3AA-06 8 74917080 74917080 G A LY96 Silent p.L54L 0.19 TCGA-EE-A3AA-06 8 76459898 76459898 G A HNF4G Missense_Mutation p.A112T 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3AA-06 8 77766737 77766737 C T ZFHX4 Missense_Mutation p.P2527L 0.10 possibly_damaging(0.561) TCGA-EE-A3AA-06 8 85774624 85774624 G A RALYL Silent p.G182G 0.25 TCGA-EE-A3AA-06 8 86356323 86356323 G A CA3 Missense_Mutation p.D138N 0.10 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A3AA-06 8 87242252 87242252 C T SLC7A13 Silent p.K85K 0.16 TCGA-EE-A3AA-06 8 92346659 92346659 C T SLC26A7 Missense_Mutation p.P260L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 8 93017381 93017381 C T RUNX1T1 Missense_Mutation p.D246N 0.22 deleterious(0.03) benign(0.349) TCGA-EE-A3AA-06 8 98041631 98041631 G A CPQ Missense_Mutation p.G321E 0.23 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A3AA-06 9 100119947 100119947 C T CCDC180 Silent p.F1145F 0.12 TCGA-EE-A3AA-06 9 100692587 100692587 C T HEMGN Missense_Mutation p.E364K 0.10 tolerated(0.1) possibly_damaging(0.801) TCGA-EE-A3AA-06 9 105767538 105767538 G A CYLC2 Missense_Mutation p.E209K 0.15 deleterious(0.01) unknown(0) TCGA-EE-A3AA-06 9 107289287 107289287 G A OR13C4 Silent p.F68F 0.16 TCGA-EE-A3AA-06 9 107457149 107457149 G A OR13D1 Silent p.V149V 0.12 TCGA-EE-A3AA-06 9 111617786 111617786 G A ACTL7B Missense_Mutation p.P142L 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AA-06 9 113198674 113198674 G A SVEP1 Silent p.L1584L 0.12 TCGA-EE-A3AA-06 9 113530113 113530113 G A MUSK Missense_Mutation p.D312N 0.24 tolerated(0.1) benign(0.027) TCGA-EE-A3AA-06 9 114490285 114490285 C T C9orf84 Missense_Mutation p.D424N 0.11 tolerated(1) benign(0) TCGA-EE-A3AA-06 9 114840972 114840972 C T SUSD1 Silent p.K533K 0.16 TCGA-EE-A3AA-06 9 116931580 116931580 C T COL27A1 Missense_Mutation p.P582L 0.16 unknown(0) TCGA-EE-A3AA-06 9 117050768 117050768 C - COL27A1 Frame_Shift_Del p.P1342Lfs*225 0.08 TCGA-EE-A3AA-06 9 119380722 119380722 G A ASTN2 Missense_Mutation p.S1028F 0.19 deleterious(0) unknown(0) TCGA-EE-A3AA-06 9 125281534 125281534 G A OR1J4 Missense_Mutation p.V39M 0.09 deleterious_low_confidence(0.04) benign(0.373) TCGA-EE-A3AA-06 9 125424092 125424092 C T OR1L1 Missense_Mutation p.P33L 0.21 tolerated(0.66) benign(0) TCGA-EE-A3AA-06 9 125551214 125551214 G A OR5C1 Translation_Start_Site p.M1? 0.28 deleterious(0.01) probably_damaging(0.914) TCGA-EE-A3AA-06 9 125909134 125909134 C T STRBP Silent p.K446K 0.26 TCGA-EE-A3AA-06 9 127253497 127253497 G A NR5A1 Missense_Mutation p.T334I 0.13 deleterious(0.01) benign(0.061) TCGA-EE-A3AA-06 9 128722988 128722988 G A PBX3 Missense_Mutation p.R290Q 0.18 deleterious(0.02) probably_damaging(0.943) TCGA-EE-A3AA-06 9 130536637 130536637 G A SH2D3C Silent p.T49T 0.18 TCGA-EE-A3AA-06 9 130536638 130536638 G A SH2D3C Missense_Mutation p.T49I 0.19 tolerated(0.31) benign(0.003) TCGA-EE-A3AA-06 9 130634973 130634973 G T AK1 Missense_Mutation p.P68Q 0.11 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AA-06 9 13119539 13119539 G A MPDZ Missense_Mutation p.R1781C 0.16 deleterious(0) probably_damaging(0.91) TCGA-EE-A3AA-06 9 131939530 131939531 CC - IER5L Frame_Shift_Del p.N269Rfs*173 0.09 TCGA-EE-A3AA-06 9 136337165 136337165 C T SLC2A6 Missense_Mutation p.G501E 0.20 deleterious(0) possibly_damaging(0.847) TCGA-EE-A3AA-06 9 137716508 137716508 C T COL5A1 Silent p.I1587I 0.12 TCGA-EE-A3AA-06 9 137717680 137717680 C T COL5A1 Missense_Mutation p.S1666F 0.08 unknown(0) TCGA-EE-A3AA-06 9 139905119 139905119 G A ABCA2 Missense_Mutation p.R2043W 0.18 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AA-06 9 139905120 139905120 G A ABCA2 Silent p.L2042L 0.17 TCGA-EE-A3AA-06 9 140672440 140672440 C T EHMT1 Missense_Mutation p.P709S 0.15 tolerated(0.54) benign(0.001) TCGA-EE-A3AA-06 9 140948323 140948323 C T CACNA1B Missense_Mutation p.S1278F 0.17 deleterious(0.01) possibly_damaging(0.599) TCGA-EE-A3AA-06 9 140948324 140948324 C T CACNA1B Silent p.S1278S 0.17 TCGA-EE-A3AA-06 9 14748556 14748556 C T FREM1 Missense_Mutation p.G1880E 0.08 tolerated(0.12) benign(0.013) TCGA-EE-A3AA-06 9 14801666 14801666 C T FREM1 Missense_Mutation p.M1226I 0.24 deleterious(0.01) benign(0.064) TCGA-EE-A3AA-06 9 14851493 14851493 G A FREM1 Missense_Mutation p.S314F 0.18 deleterious(0.01) benign(0.013) TCGA-EE-A3AA-06 9 15591488 15591488 C T CCDC171 Silent p.I159I 0.15 TCGA-EE-A3AA-06 9 21206505 21206505 C T IFNA10 3'UTR 0.24 TCGA-EE-A3AA-06 9 32632916 32632916 G A TAF1L Missense_Mutation p.R888C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AA-06 9 32633276 32633276 G A TAF1L Missense_Mutation p.R768C 0.12 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AA-06 9 35043984 35043984 G A C9orf131 Nonsense_Mutation p.W453* 0.22 TCGA-EE-A3AA-06 9 35045503 35045503 G A C9orf131 Silent p.G959G 0.10 TCGA-EE-A3AA-06 9 35870314 35870314 G A OR13J1 Missense_Mutation p.P29S 0.21 deleterious(0.01) benign(0.11) TCGA-EE-A3AA-06 9 36966612 36966612 G A PAX5 Silent p.D238D 0.25 TCGA-EE-A3AA-06 9 37126554 37126554 C T ZCCHC7 Silent p.I75I 0.09 TCGA-EE-A3AA-06 9 37708410 37708410 G A FRMPD1 Missense_Mutation p.G92S 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 9 4118625 4118625 T A GLIS3 Missense_Mutation p.S285C 0.11 deleterious(0) possibly_damaging(0.715) TCGA-EE-A3AA-06 9 5089711 5089711 C T JAK2 Missense_Mutation p.P870L 0.13 deleterious(0.03) probably_damaging(0.981) TCGA-EE-A3AA-06 9 5233821 5233821 C T INSL4 Missense_Mutation p.P122S 0.20 tolerated(0.13) benign(0.387) TCGA-EE-A3AA-06 9 5456165 5456165 G A CD274 Missense_Mutation p.A18T 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 9 71114251 71114251 C T PGM5 Missense_Mutation p.P530S 0.21 tolerated(0.24) benign(0.065) TCGA-EE-A3AA-06 9 72659125 72659125 G A MAMDC2 Silent p.R4R 0.30 TCGA-EE-A3AA-06 9 77277467 77277467 G A RORB Silent p.R279R 0.18 TCGA-EE-A3AA-06 9 79118080 79118080 C T GCNT1 Silent p.V261V 0.09 TCGA-EE-A3AA-06 9 79985331 79985331 G A VPS13A Missense_Mutation p.G2915D 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AA-06 9 8389365 8389365 C G PTPRD Missense_Mutation p.G1418A 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 9 84608067 84608067 C T SPATA31D1 Silent p.F894F 0.11 TCGA-EE-A3AA-06 9 8521505 8521505 G A PTPRD Missense_Mutation p.H245Y 0.30 tolerated(0.36) probably_damaging(0.972) TCGA-EE-A3AA-06 9 86518863 86518863 A G KIF27 Silent p.N190N 0.17 TCGA-EE-A3AA-06 9 86530216 86530216 G A KIF27 Silent p.G97G 0.15 TCGA-EE-A3AA-06 9 87342858 87342858 G A NTRK2 Nonsense_Mutation p.W381* 0.09 TCGA-EE-A3AA-06 9 88593212 88593212 A T NAA35 Missense_Mutation p.M265L 0.13 tolerated(1) benign(0) TCGA-EE-A3AA-06 9 90396141 90396141 C A CTSL3P Intron 0.09 TCGA-EE-A3AA-06 9 91686138 91686138 G A SHC3 Silent p.I253I 0.16 TCGA-EE-A3AA-06 9 94486555 94486555 C T ROR2 Missense_Mutation p.D741N 0.17 deleterious(0) possibly_damaging(0.823) TCGA-EE-A3AA-06 9 94499761 94499761 C T ROR2 Silent p.R178R 0.18 TCGA-EE-A3AA-06 9 96428031 96428031 G A PHF2 Silent p.E667E 0.23 TCGA-EE-A3AA-06 9 97082597 97082597 C T NUTM2F Missense_Mutation p.E421K 0.18 tolerated(0.13) benign(0.199) TCGA-EE-A3AA-06 X 102332623 102332623 C T NXF3 Silent p.G501G 0.12 TCGA-EE-A3AA-06 X 105277417 105277417 C T SERPINA7 3'UTR 0.41 TCGA-EE-A3AA-06 X 105277506 105277506 G A SERPINA7 Silent p.N411N 0.15 TCGA-EE-A3AA-06 X 107084244 107084244 C T MID2 Missense_Mutation p.P117S 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AA-06 X 107084245 107084245 C T MID2 Missense_Mutation p.P117L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AA-06 X 107169345 107169345 C T MID2 Missense_Mutation p.P540L 0.18 deleterious(0) benign(0.065) TCGA-EE-A3AA-06 X 107413904 107413904 G A COL4A6 Missense_Mutation p.P1144L 0.34 probably_damaging(1) TCGA-EE-A3AA-06 X 107436889 107436889 A T COL4A6 Silent p.V348V 0.14 TCGA-EE-A3AA-06 X 107865032 107865032 G A COL4A5 Splice_Site p.X893_splice 0.26 TCGA-EE-A3AA-06 X 107865993 107865993 C T COL4A5 Missense_Mutation p.P952L 0.28 unknown(0) TCGA-EE-A3AA-06 X 108652302 108652302 C T GUCY2F Silent p.G629G 0.17 TCGA-EE-A3AA-06 X 110494480 110494480 G A CAPN6 Missense_Mutation p.R310C 0.30 deleterious(0.02) benign(0.392) TCGA-EE-A3AA-06 X 110574161 110574161 G A DCX Missense_Mutation p.S387F 0.12 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AA-06 X 111097061 111097061 C T TRPC5 Missense_Mutation p.D392N 0.31 tolerated(0.27) benign(0.003) TCGA-EE-A3AA-06 X 115590108 115590108 G A SLC6A14 Missense_Mutation p.R639K 0.21 tolerated(0.98) benign(0.003) TCGA-EE-A3AA-06 X 117106747 117106747 G A KLHL13 Intron 0.27 TCGA-EE-A3AA-06 X 118221191 118221191 G A KIAA1210 Silent p.S1334S 0.31 TCGA-EE-A3AA-06 X 118221192 118221192 G A KIAA1210 Missense_Mutation p.S1334F 0.31 tolerated(0.62) benign(0.068) TCGA-EE-A3AA-06 X 118221688 118221688 C T KIAA1210 Missense_Mutation p.E1169K 0.35 deleterious(0.01) benign(0.187) TCGA-EE-A3AA-06 X 119037177 119037177 G A AKAP14 Intron 0.60 TCGA-EE-A3AA-06 X 123787498 123787498 G A TENM1 Missense_Mutation p.S435F 0.29 deleterious(0) possibly_damaging(0.866) TCGA-EE-A3AA-06 X 129149395 129149395 G A BCORL1 Missense_Mutation p.G883R 0.32 benign(0.111) TCGA-EE-A3AA-06 X 129149396 129149396 G A BCORL1 Missense_Mutation p.G883E 0.33 possibly_damaging(0.658) TCGA-EE-A3AA-06 X 130410050 130410050 G A IGSF1 Silent p.F932F 0.37 TCGA-EE-A3AA-06 X 131212601 131212601 G A FRMD7 Missense_Mutation p.P482S 0.25 deleterious(0) possibly_damaging(0.764) TCGA-EE-A3AA-06 X 132159790 132159790 C T USP26 Missense_Mutation p.G820E 0.10 tolerated(1) benign(0.065) TCGA-EE-A3AA-06 X 132351065 132351065 G A TFDP3 3'UTR 0.21 TCGA-EE-A3AA-06 X 132439917 132439917 G A GPC4 Silent p.P346P 0.33 TCGA-EE-A3AA-06 X 13337902 13337902 C T ATXN3L Missense_Mutation p.G51E 0.29 deleterious(0.03) benign(0.171) TCGA-EE-A3AA-06 X 134948038 134948038 C T CT45A5 Missense_Mutation p.G96E 0.19 tolerated(0.09) benign(0.243) TCGA-EE-A3AA-06 X 134994496 134994496 C T SAGE1 Silent p.F846F 0.19 TCGA-EE-A3AA-06 X 135469917 135469917 C G GPR112 Missense_Mutation p.P2599A 0.19 deleterious(0.04) benign(0.148) TCGA-EE-A3AA-06 X 139038113 139038113 A G CXorf66 Missense_Mutation p.I343T 0.15 tolerated(1) benign(0) TCGA-EE-A3AA-06 X 139586740 139586740 G A SOX3 Silent p.P162P 0.17 TCGA-EE-A3AA-06 X 140994253 140994253 C T MAGEC1 Nonsense_Mutation p.Q355* 0.13 TCGA-EE-A3AA-06 X 140995238 140995238 C T MAGEC1 Missense_Mutation p.P683L 0.26 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A3AA-06 X 141290912 141290912 C T MAGEC2 Missense_Mutation p.E288K 0.19 tolerated(0.07) possibly_damaging(0.542) TCGA-EE-A3AA-06 X 141291491 141291491 G A MAGEC2 Missense_Mutation p.P95S 0.38 tolerated(0.1) probably_damaging(0.96) TCGA-EE-A3AA-06 X 142605190 142605190 C T SPANXN3 Silent p.G10G 0.11 TCGA-EE-A3AA-06 X 142717196 142717196 C T SLITRK4 Missense_Mutation p.E577K 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A3AA-06 X 142717706 142717706 G A SLITRK4 Missense_Mutation p.H407Y 0.11 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AA-06 X 147106386 147106386 G A FMR1NB Missense_Mutation p.E212K 0.32 tolerated(1) possibly_damaging(0.502) TCGA-EE-A3AA-06 X 148797799 148797799 C T MAGEA11 Missense_Mutation p.S218F 0.43 tolerated(0.83) benign(0.011) TCGA-EE-A3AA-06 X 150349595 150349595 G A GPR50 Missense_Mutation p.E514K 0.25 tolerated_low_confidence(0.05) benign(0.09) TCGA-EE-A3AA-06 X 150867280 150867280 G A PRRG3 5'UTR 0.23 TCGA-EE-A3AA-06 X 150885784 150885784 G A FATE1 Silent p.Q49Q 0.29 TCGA-EE-A3AA-06 X 151821657 151821657 C T GABRQ Silent p.V604V 0.19 TCGA-EE-A3AA-06 X 151870287 151870287 G A MAGEA6 3'UTR 0.31 TCGA-EE-A3AA-06 X 151899801 151899801 G A MAGEA12 3'UTR 0.35 TCGA-EE-A3AA-06 X 151899988 151899988 G A MAGEA12 Silent p.F271F 0.27 TCGA-EE-A3AA-06 X 153130813 153130813 G A L1CAM Missense_Mutation p.A897V 0.27 tolerated(1) benign(0.019) TCGA-EE-A3AA-06 X 1531636 1531636 C T ASMTL Missense_Mutation p.S545N 0.19 tolerated(0.25) possibly_damaging(0.477) TCGA-EE-A3AA-06 X 153222905 153222905 G A HCFC1 Missense_Mutation p.T738I 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AA-06 X 154158605 154158605 C T F8 Missense_Mutation p.E1154K 0.10 tolerated(0.32) benign(0.013) TCGA-EE-A3AA-06 X 154774867 154774867 G T TMLHE Missense_Mutation p.P24Q 0.43 tolerated_low_confidence(0.56) benign(0.001) TCGA-EE-A3AA-06 X 17819704 17819704 C T RAI2 Missense_Mutation p.E143K 0.40 tolerated(0.77) possibly_damaging(0.717) TCGA-EE-A3AA-06 X 18627627 18627627 C T CDKL5 Missense_Mutation p.P697S 0.19 tolerated_low_confidence(1) benign(0) TCGA-EE-A3AA-06 X 19984628 19984628 G A CXorf23 Missense_Mutation p.P61S 0.33 tolerated(0.51) benign(0.02) TCGA-EE-A3AA-06 X 3028290 3028290 G A ARSF Missense_Mutation p.D463N 0.30 tolerated(0.53) benign(0.001) TCGA-EE-A3AA-06 X 3228260 3228260 G A MXRA5 Missense_Mutation p.P2662S 0.38 tolerated(0.35) benign(0.141) TCGA-EE-A3AA-06 X 3242419 3242419 G A MXRA5 Missense_Mutation p.S436F 0.31 tolerated(0.72) benign(0.208) TCGA-EE-A3AA-06 X 3248289 3248289 C T MXRA5 Missense_Mutation p.G160E 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AA-06 X 34148155 34148155 G C FAM47A Silent p.G747G 0.20 TCGA-EE-A3AA-06 X 41196686 41196686 C A DDX3X Nonsense_Mutation p.S24* 0.32 TCGA-EE-A3AA-06 X 49958065 49958065 G A AKAP4 Silent p.A433A 0.16 TCGA-EE-A3AA-06 X 54497077 54497077 G A FGD1 Missense_Mutation p.P200S 0.27 tolerated(0.5) benign(0.016) TCGA-EE-A3AA-06 X 55054205 55054205 C T ALAS2 Intron 0.21 TCGA-EE-A3AA-06 X 5811039 5811039 G A NLGN4X Missense_Mutation p.P757L 0.33 tolerated_low_confidence(0.27) probably_damaging(0.992) TCGA-EE-A3AA-06 X 69255459 69255459 G A EDA Silent p.%3D 0.24 TCGA-EE-A3AA-06 X 73064279 73064279 G A XIST RNA 0.38 TCGA-EE-A3AA-06 X 73960241 73960241 C T KIAA2022 Missense_Mutation p.G1384E 0.27 deleterious(0.01) possibly_damaging(0.678) TCGA-EE-A3AA-06 X 74318808 74318808 G A ABCB7 Missense_Mutation p.A142V 0.22 tolerated(1) benign(0.001) TCGA-EE-A3AA-06 X 75650874 75650874 C T MAGEE1 Missense_Mutation p.H851Y 0.27 tolerated(0.32) probably_damaging(0.995) TCGA-EE-A3AA-06 X 91132487 91132487 C T PCDH11X Silent p.F416F 0.11 TCGA-EE-A3AA-06 Y 16952313 16952313 C T NLGN4Y Missense_Mutation p.P541L 0.32 deleterious(0.01) possibly_damaging(0.788) TCGA-EE-A3AA-06 Y 3447269 3447269 G A TGIF2LY 5'UTR 0.31 TCGA-EE-A3AA-06 Y 5605694 5605694 C T PCDH11Y Missense_Mutation p.A1245V 0.12 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-EE-A3AB-06 10 102748512 102748512 T C C10orf2 Missense_Mutation p.L182P 0.35 deleterious(0) possibly_damaging(0.836) TCGA-EE-A3AB-06 10 106074717 106074717 G A ITPRIP Missense_Mutation p.L365F 0.59 tolerated(1) benign(0.013) TCGA-EE-A3AB-06 10 11504960 11504960 G A USP6NL Missense_Mutation p.P673L 0.33 tolerated_low_confidence(0.07) benign(0.012) TCGA-EE-A3AB-06 10 120925159 120925159 T C SFXN4 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) benign(0.067) TCGA-EE-A3AB-06 10 121557075 121557075 T C INPP5F Missense_Mutation p.V324A 0.12 deleterious(0.04) benign(0.015) TCGA-EE-A3AB-06 10 13275752 13275752 C T UCMA Missense_Mutation p.G36E 0.23 tolerated(0.37) benign(0.009) TCGA-EE-A3AB-06 10 27702556 27702556 G A PTCHD3 Silent p.F208F 0.57 TCGA-EE-A3AB-06 10 32560702 32560702 T C EPC1 Missense_Mutation p.T740A 0.13 tolerated(0.67) benign(0.002) TCGA-EE-A3AB-06 10 50531444 50531444 C T C10orf71 Missense_Mutation p.P285L 0.58 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AB-06 10 5437436 5437436 C T TUBAL3 Missense_Mutation p.G84R 0.48 deleterious_low_confidence(0.04) benign(0.025) TCGA-EE-A3AB-06 10 55582479 55582479 G A PCDH15 Silent p.F1671F 0.63 TCGA-EE-A3AB-06 10 5788707 5788707 G A FAM208B Missense_Mutation p.R1108K 0.58 tolerated(0.58) benign(0.015) TCGA-EE-A3AB-06 10 61829894 61829894 G A ANK3 Missense_Mutation p.T3582I 0.20 probably_damaging(0.981) TCGA-EE-A3AB-06 10 64954067 64954067 T C JMJD1C Missense_Mutation p.T1905A 0.13 deleterious(0) possibly_damaging(0.762) TCGA-EE-A3AB-06 10 70719939 70719939 T C DDX21 Silent p.P155P 0.52 TCGA-EE-A3AB-06 10 73121791 73121791 C T SLC29A3 Missense_Mutation p.S285L 0.59 tolerated(0.49) benign(0.001) TCGA-EE-A3AB-06 10 75520474 75520474 C T SEC24C Missense_Mutation p.S285F 0.63 tolerated(0.11) probably_damaging(0.934) TCGA-EE-A3AB-06 10 76854536 76854536 G A DUSP13 Silent p.I215I 0.52 TCGA-EE-A3AB-06 10 7841005 7841005 C T ATP5C1 Silent p.L92L 0.45 TCGA-EE-A3AB-06 10 95791712 95791712 C T PLCE1 Silent p.F303F 0.55 TCGA-EE-A3AB-06 10 98109573 98109573 G A OPALIN Missense_Mutation p.P28L 0.61 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A3AB-06 11 1010950 1010950 T C AP2A2 3'UTR 0.26 TCGA-EE-A3AB-06 11 101353691 101353691 G A TRPC6 Missense_Mutation p.S500F 0.60 tolerated(0.24) probably_damaging(0.95) TCGA-EE-A3AB-06 11 10580718 10580718 G A LYVE1 Silent p.N303N 0.41 TCGA-EE-A3AB-06 11 117163893 117163893 A G BACE1 Silent p.G239G 0.44 TCGA-EE-A3AB-06 11 118463521 118463521 T C ARCN1 Missense_Mutation p.V361A 0.25 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AB-06 11 118502728 118502728 T C PHLDB1 Silent p.R733R 0.21 TCGA-EE-A3AB-06 11 118516207 118516207 T C PHLDB1 Silent p.P1085P 0.07 TCGA-EE-A3AB-06 11 124517266 124517266 C A SIAE Missense_Mutation p.V321F 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 11 124517267 124517267 A G SIAE Silent p.L320L 0.53 TCGA-EE-A3AB-06 11 126136093 126136093 A G SRPR Silent p.S307S 0.21 TCGA-EE-A3AB-06 11 126136122 126136122 A G SRPR Missense_Mutation p.S298P 0.17 tolerated(0.23) benign(0.024) TCGA-EE-A3AB-06 11 134212800 134212800 A G GLB1L2 Missense_Mutation p.D80G 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 11 20178610 20178610 C T DBX1 Silent p.A215A 0.26 TCGA-EE-A3AB-06 11 26655803 26655803 C T ANO3 Silent p.F642F 0.40 TCGA-EE-A3AB-06 11 26702710 26702710 G A SLC5A12 Missense_Mutation p.A456V 0.61 deleterious(0.01) possibly_damaging(0.511) TCGA-EE-A3AB-06 11 4388943 4388943 G A OR52B4 Nonsense_Mutation p.R195* 0.51 TCGA-EE-A3AB-06 11 45959822 45959822 A G PHF21A Silent p.S497S 0.26 TCGA-EE-A3AB-06 11 4903778 4903778 C T OR51T1 Missense_Mutation p.L244F 0.53 tolerated(0.24) benign(0.117) TCGA-EE-A3AB-06 11 49179526 49179526 G A FOLH1 Missense_Mutation p.P504S 0.43 tolerated(0.42) benign(0.001) TCGA-EE-A3AB-06 11 4945494 4945494 G A OR51G1 Missense_Mutation p.H26Y 0.54 tolerated(0.18) benign(0.019) TCGA-EE-A3AB-06 11 5247939 5247939 C T HBB Silent p.V61V 0.48 TCGA-EE-A3AB-06 11 57996058 57996058 G A OR10Q1 Missense_Mutation p.S97L 0.52 deleterious(0) benign(0.102) TCGA-EE-A3AB-06 11 62294596 62294596 T C AHNAK Silent p.G2431G 0.19 TCGA-EE-A3AB-06 11 62554746 62554746 A G TAF6L Missense_Mutation p.Y616C 0.15 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-EE-A3AB-06 11 63487677 63487677 A G RTN3 Missense_Mutation p.Q568R 0.12 tolerated(0.07) benign(0.01) TCGA-EE-A3AB-06 11 6425049 6425049 G A APBB1 Missense_Mutation p.S242F 0.39 deleterious(0.03) probably_damaging(0.952) TCGA-EE-A3AB-06 11 64673911 64673911 T C ATG2A Silent p.E1026E 0.16 TCGA-EE-A3AB-06 11 64684506 64684506 G A ATG2A Silent p.S34S 0.45 TCGA-EE-A3AB-06 11 6477534 6477534 G A TRIM3 Silent p.F474F 0.39 TCGA-EE-A3AB-06 11 65269103 65269103 T C MALAT1 RNA 0.21 TCGA-EE-A3AB-06 11 65350678 65350678 G A EHBP1L1 Silent p.E845E 0.22 TCGA-EE-A3AB-06 11 65780335 65780335 G A CST6 Missense_Mutation p.M93I 0.22 deleterious(0.04) benign(0.093) TCGA-EE-A3AB-06 11 67925262 67925262 G A SUV420H1 Missense_Mutation p.P851S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 11 68703912 68703912 A G IGHMBP2 Missense_Mutation p.N655S 0.15 tolerated(1) benign(0) TCGA-EE-A3AB-06 11 78412975 78412975 C T TENM4 Silent p.R1561R 0.25 TCGA-EE-A3AB-06 11 9459719 9459719 T C IPO7 Missense_Mutation p.I861T 0.30 deleterious(0) possibly_damaging(0.653) TCGA-EE-A3AB-06 12 100489584 100489584 A G UHRF1BP1L Missense_Mutation p.L234S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 12 100564720 100564720 A G RP11-175P13.3 3'Flank 0.12 TCGA-EE-A3AB-06 12 100926293 100926293 A G NR1H4 Missense_Mutation p.N178S 0.14 tolerated(0.34) benign(0.011) TCGA-EE-A3AB-06 12 104388243 104388243 C A GLT8D2 Missense_Mutation p.A213S 0.20 tolerated(0.77) benign(0.006) TCGA-EE-A3AB-06 12 108106077 108106077 A G PWP1 3'UTR 0.31 TCGA-EE-A3AB-06 12 110600794 110600794 G A IFT81 Missense_Mutation p.S371N 0.12 tolerated(0.65) benign(0) TCGA-EE-A3AB-06 12 110784264 110784264 T C ATP2A2 Missense_Mutation p.F1040L 0.25 tolerated_low_confidence(0.07) benign(0.006) TCGA-EE-A3AB-06 12 11091267 11091267 T G TAS2R14 Silent p.V180V 0.34 TCGA-EE-A3AB-06 12 111885901 111885901 G C SH2B3 Missense_Mutation p.R508P 0.20 tolerated(0.08) benign(0.005) TCGA-EE-A3AB-06 12 113405854 113405854 G A OAS3 Silent p.E993E 0.25 TCGA-EE-A3AB-06 12 113405855 113405855 G A OAS3 Missense_Mutation p.G994S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 12 114380138 114380138 G A RBM19 Silent p.S576S 0.33 TCGA-EE-A3AB-06 12 114380139 114380139 G A RBM19 Missense_Mutation p.S576F 0.33 deleterious(0) possibly_damaging(0.775) TCGA-EE-A3AB-06 12 117660537 117660537 C T NOS1 Missense_Mutation p.E1354K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 12 117726018 117726018 C T NOS1 Missense_Mutation p.G330R 0.27 tolerated(0.55) benign(0.309) TCGA-EE-A3AB-06 12 118198982 118198982 G A KSR2 Missense_Mutation p.P274S 0.33 deleterious(0.03) benign(0.404) TCGA-EE-A3AB-06 12 120222087 120222087 A G CIT Intron 0.21 TCGA-EE-A3AB-06 12 121469308 121469308 G A OASL Silent p.F198F 0.35 TCGA-EE-A3AB-06 12 122625529 122625529 A G MLXIP Missense_Mutation p.E846G 0.10 deleterious(0) benign(0.424) TCGA-EE-A3AB-06 12 12332832 12332832 T C LRP6 Missense_Mutation p.N486S 0.20 tolerated(0.39) benign(0.393) TCGA-EE-A3AB-06 12 124401001 124401001 C T DNAH10 Intron 0.37 TCGA-EE-A3AB-06 12 124817777 124817777 A G NCOR2 Silent p.G2218G 0.24 TCGA-EE-A3AB-06 12 124911290 124911290 A G NCOR2 Silent p.A402A 0.18 TCGA-EE-A3AB-06 12 130856156 130856156 G A PIWIL1 3'UTR 0.41 TCGA-EE-A3AB-06 12 132611123 132611123 A G RP13-977J11.5 RNA 0.15 TCGA-EE-A3AB-06 12 133365873 133365873 T C GOLGA3 Missense_Mutation p.M851V 0.12 deleterious(0.05) benign(0.373) TCGA-EE-A3AB-06 12 21487532 21487532 G A SLCO1A2 Missense_Mutation p.S17F 0.27 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AB-06 12 2975601 2975601 G A FOXM1 Silent p.H311H 0.30 TCGA-EE-A3AB-06 12 32777368 32777368 C G FGD4 Missense_Mutation p.D508E 0.22 tolerated(1) benign(0.104) TCGA-EE-A3AB-06 12 46246415 46246415 T G ARID2 Silent p.V1503V 0.42 TCGA-EE-A3AB-06 12 4777656 4777656 C T NDUFA9 Missense_Mutation p.S230F 0.31 tolerated(0.09) benign(0.213) TCGA-EE-A3AB-06 12 48919450 48919450 C T OR8S1 Silent p.F12F 0.28 TCGA-EE-A3AB-06 12 52757039 52757039 G A KRT85 Silent p.Y314Y 0.35 TCGA-EE-A3AB-06 12 52940249 52940249 C A KRT71 Silent p.R382R 0.24 TCGA-EE-A3AB-06 12 52985259 52985259 A T KRT72 Missense_Mutation p.Y318N 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 12 53043751 53043751 C T KRT2 Missense_Mutation p.D270N 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AB-06 12 53043752 53043752 C T KRT2 Silent p.E269E 0.23 TCGA-EE-A3AB-06 12 53202189 53202189 C T KRT4 Silent p.Q338Q 0.37 TCGA-EE-A3AB-06 12 53217794 53217794 A C KRT79 Nonsense_Mutation p.Y341* 0.11 TCGA-EE-A3AB-06 12 53876438 53876438 C T MAP3K12 Missense_Mutation p.G717R 0.32 tolerated_low_confidence(0.46) benign(0.126) TCGA-EE-A3AB-06 12 53898559 53898559 A G TARBP2 Silent p.E191E 0.17 TCGA-EE-A3AB-06 12 54756680 54756680 C T GPR84 Missense_Mutation p.R319Q 0.36 deleterious(0.01) benign(0.126) TCGA-EE-A3AB-06 12 54756709 54756709 A T GPR84 Missense_Mutation p.D309E 0.29 tolerated(0.21) benign(0.005) TCGA-EE-A3AB-06 12 55356843 55356843 C T TESPA1 Missense_Mutation p.R280K 0.31 tolerated(0.81) probably_damaging(0.939) TCGA-EE-A3AB-06 12 56514649 56514649 T C ZC3H10 Silent p.D101D 0.15 TCGA-EE-A3AB-06 12 56524849 56524849 T C ESYT1 Missense_Mutation p.V198A 0.11 tolerated(0.64) benign(0.02) TCGA-EE-A3AB-06 12 56622968 56622968 A G NABP2 Missense_Mutation p.K203E 0.27 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AB-06 12 56704377 56704377 G A CNPY2 Missense_Mutation p.L170F 0.32 tolerated(0.2) possibly_damaging(0.783) TCGA-EE-A3AB-06 12 57005902 57005902 C T BAZ2A Missense_Mutation p.A424T 0.12 tolerated(0.39) benign(0.001) TCGA-EE-A3AB-06 12 57965863 57965863 G A KIF5A Missense_Mutation p.G461E 0.22 tolerated(0.86) possibly_damaging(0.856) TCGA-EE-A3AB-06 12 6702381 6702381 A G CHD4 Missense_Mutation p.V843A 0.18 deleterious(0) possibly_damaging(0.822) TCGA-EE-A3AB-06 12 70928401 70928401 G C PTPRB Missense_Mutation p.R2079G 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 12 7171655 7171655 C T C1S Missense_Mutation p.P159L 0.35 tolerated(0.07) probably_damaging(0.995) TCGA-EE-A3AB-06 12 7171656 7171656 C T C1S Silent p.P159P 0.34 TCGA-EE-A3AB-06 12 72029312 72029312 T C ZFC3H1 Missense_Mutation p.S717G 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A3AB-06 12 72969158 72969158 G C TRHDE Missense_Mutation p.R707P 0.12 tolerated(0.2) possibly_damaging(0.802) TCGA-EE-A3AB-06 12 75874778 75874778 A G GLIPR1 Missense_Mutation p.I40V 0.25 tolerated(0.81) benign(0.006) TCGA-EE-A3AB-06 12 7647853 7647853 C T CD163 Missense_Mutation p.G415E 0.32 tolerated(0.09) possibly_damaging(0.458) TCGA-EE-A3AB-06 12 80632729 80632729 C T OTOGL Missense_Mutation p.P297S 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3AB-06 12 81101648 81101648 G A MYF6 Silent p.P50P 0.27 TCGA-EE-A3AB-06 12 81205378 81205378 G A LIN7A Missense_Mutation p.P190S 0.29 deleterious(0) possibly_damaging(0.857) TCGA-EE-A3AB-06 12 8990163 8990163 G A A2ML1 Splice_Site p.X285_splice 0.11 TCGA-EE-A3AB-06 12 9907776 9907776 A G CD69 Missense_Mutation p.V90A 0.12 deleterious(0) benign(0.393) TCGA-EE-A3AB-06 12 99194899 99194899 C T ANKS1B Missense_Mutation p.G1024E 0.41 tolerated(0.16) benign(0.05) TCGA-EE-A3AB-06 13 100169902 100169902 C T TM9SF2 Missense_Mutation p.S69L 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 13 110823073 110823073 T C COL4A1 Missense_Mutation p.K1188R 0.20 probably_damaging(0.997) TCGA-EE-A3AB-06 13 110823081 110823081 T C COL4A1 Splice_Site p.X1186_splice 0.20 TCGA-EE-A3AB-06 13 114542734 114542734 T C GAS6 Missense_Mutation p.K145E 0.24 deleterious(0.02) benign(0.059) TCGA-EE-A3AB-06 13 23808834 23808834 G A SGCG Missense_Mutation p.E94K 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A3AB-06 13 24823724 24823724 G A SPATA13 Missense_Mutation p.R588Q 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 13 29933398 29933398 G A MTUS2 Splice_Site p.X979_splice 0.33 TCGA-EE-A3AB-06 13 32745227 32745227 T C FRY Silent p.D657D 0.42 TCGA-EE-A3AB-06 13 32915029 32915029 T G BRCA2 Silent p.V2179V 0.19 TCGA-EE-A3AB-06 13 42144660 42144660 G A VWA8 Silent p.D1851D 0.21 TCGA-EE-A3AB-06 13 42149909 42149909 G A VWA8 Silent p.P1779P 0.13 TCGA-EE-A3AB-06 13 45768425 45768425 A G KCTD4 Missense_Mutation p.L93P 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 13 48934160 48934160 A G RB1 Silent p.V205V 0.12 TCGA-EE-A3AB-06 13 49742751 49742751 T C FNDC3A Missense_Mutation p.V347A 0.12 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3AB-06 14 103969227 103969227 T C MARK3 Missense_Mutation p.V642A 0.10 tolerated(0.26) possibly_damaging(0.489) TCGA-EE-A3AB-06 14 105405320 105405320 G C AHNAK2 Missense_Mutation p.L5490V 0.27 benign(0.351) TCGA-EE-A3AB-06 14 105621918 105621918 T C JAG2 Missense_Mutation p.T257A 0.11 tolerated(0.46) benign(0) TCGA-EE-A3AB-06 14 105716494 105716494 T C BTBD6 Missense_Mutation p.Y315H 0.16 deleterious(0.04) benign(0.039) TCGA-EE-A3AB-06 14 19553825 19553825 C T POTEG Nonsense_Mutation p.R137* 0.08 TCGA-EE-A3AB-06 14 20020204 20020204 C T POTEM Missense_Mutation p.G6D 0.14 tolerated_low_confidence(0.92) benign(0) TCGA-EE-A3AB-06 14 20404621 20404621 C T OR4K1 Missense_Mutation p.P266S 0.17 tolerated(0.73) benign(0.003) TCGA-EE-A3AB-06 14 20612527 20612527 C T OR4N5 Silent p.F211F 0.37 TCGA-EE-A3AB-06 14 23345368 23345368 T C LRP10 Missense_Mutation p.F404S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 14 23374168 23374168 A G RBM23 Silent p.G260G 0.15 TCGA-EE-A3AB-06 14 23844966 23844966 G A IL25 Silent p.Q137Q 0.32 TCGA-EE-A3AB-06 14 24731398 24731398 C T TGM1 Missense_Mutation p.R54Q 0.30 tolerated_low_confidence(0.23) benign(0.002) TCGA-EE-A3AB-06 14 24785181 24785181 C T LTB4R Silent p.I108I 0.41 TCGA-EE-A3AB-06 14 24809080 24809080 G A RIPK3 5'UTR 0.40 TCGA-EE-A3AB-06 14 35077236 35077236 G A SNX6 Silent p.I102I 0.36 TCGA-EE-A3AB-06 14 35478024 35478024 C T SRP54 Missense_Mutation p.P158S 0.33 deleterious(0.03) possibly_damaging(0.482) TCGA-EE-A3AB-06 14 52481829 52481829 C T NID2 Missense_Mutation p.D1065N 0.31 deleterious(0.03) possibly_damaging(0.734) TCGA-EE-A3AB-06 14 56757136 56757136 T C PELI2 Silent p.L220L 0.10 TCGA-EE-A3AB-06 14 64884744 64884744 T C MTHFD1 Splice_Site p.X205_splice 0.11 TCGA-EE-A3AB-06 14 65415205 65415205 A G RAB15 3'UTR 0.08 TCGA-EE-A3AB-06 14 68229414 68229414 G T ZFYVE26 Missense_Mutation p.A2045D 0.28 deleterious(0.01) benign(0.135) TCGA-EE-A3AB-06 14 68352645 68352645 T A RAD51B Missense_Mutation p.L171H 0.17 tolerated(0.36) benign(0.209) TCGA-EE-A3AB-06 14 69521377 69521377 T C DCAF5 Missense_Mutation p.N676D 0.18 tolerated_low_confidence(0.23) benign(0.014) TCGA-EE-A3AB-06 14 71199482 71199482 C T MAP3K9 Silent p.E882E 0.14 TCGA-EE-A3AB-06 14 71199522 71199522 T C MAP3K9 Missense_Mutation p.D869G 0.17 deleterious(0) probably_damaging(0.972) TCGA-EE-A3AB-06 14 73743497 73743497 T C NUMB Missense_Mutation p.H582R 0.09 tolerated(0.77) benign(0.028) TCGA-EE-A3AB-06 14 73749086 73749086 T C NUMB Silent p.P359P 0.08 TCGA-EE-A3AB-06 14 75329421 75329421 G A PROX2 Intron 0.43 TCGA-EE-A3AB-06 14 77751909 77751909 T C POMT2 Missense_Mutation p.I467V 0.18 tolerated(1) benign(0.012) TCGA-EE-A3AB-06 14 78201324 78201324 A C SNW1 Missense_Mutation p.I247S 0.14 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AB-06 14 89034463 89034463 T C ZC3H14 Missense_Mutation p.F54L 0.21 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AB-06 14 90769285 90769285 G A NRDE2 Missense_Mutation p.P397L 0.27 tolerated(0.08) benign(0.411) TCGA-EE-A3AB-06 14 93276680 93276680 T C GOLGA5 Silent p.D358D 0.22 TCGA-EE-A3AB-06 14 93652910 93652910 T C TMEM251 Missense_Mutation p.V135A 0.16 tolerated_low_confidence(0.12) probably_damaging(0.987) TCGA-EE-A3AB-06 14 94526554 94526554 T C DDX24 Silent p.K601K 0.30 TCGA-EE-A3AB-06 14 95583017 95583017 G A DICER1 Nonsense_Mutation p.R509* 0.31 TCGA-EE-A3AB-06 14 95906000 95906000 T C SYNE3 Missense_Mutation p.E732G 0.20 deleterious(0.01) possibly_damaging(0.597) TCGA-EE-A3AB-06 15 41106354 41106354 A G ZFYVE19 Missense_Mutation p.H449R 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 15 42481343 42481343 T C VPS39 Missense_Mutation p.K104R 0.23 tolerated(0.38) benign(0.315) TCGA-EE-A3AB-06 15 43822055 43822055 G A MAP1A Missense_Mutation p.G2748E 0.48 probably_damaging(0.998) TCGA-EE-A3AB-06 15 44055313 44055313 T C PDIA3 Missense_Mutation p.F171L 0.23 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AB-06 15 50884349 50884349 G A TRPM7 Silent p.S1361S 0.42 TCGA-EE-A3AB-06 15 51790919 51790919 T C DMXL2 Missense_Mutation p.Y1501C 0.24 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AB-06 15 57838288 57838288 G A CGNL1 Silent p.L1208L 0.33 TCGA-EE-A3AB-06 15 68583223 68583223 T C FEM1B Silent p.F509F 0.16 TCGA-EE-A3AB-06 15 69325546 69325546 G A NOX5 Missense_Mutation p.D262N 0.34 tolerated(0.49) benign(0.002) TCGA-EE-A3AB-06 15 72190946 72190946 G A MYO9A Missense_Mutation p.P1300S 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-EE-A3AB-06 15 72545814 72545814 T C PARP6 Missense_Mutation p.D408G 0.21 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AB-06 15 74327980 74327980 A G PML Intron 0.10 TCGA-EE-A3AB-06 15 75015004 75015004 G A CYP1A1 Silent p.F145F 0.35 TCGA-EE-A3AB-06 15 75105363 75105363 T C LMAN1L Silent p.H56H 0.17 TCGA-EE-A3AB-06 15 75142926 75142926 G A SCAMP2 Silent p.S187S 0.38 TCGA-EE-A3AB-06 15 75142927 75142927 G A SCAMP2 Missense_Mutation p.S187F 0.37 deleterious(0.02) probably_damaging(0.978) TCGA-EE-A3AB-06 15 78393753 78393753 G A SH2D7 Silent p.R386R 0.40 TCGA-EE-A3AB-06 15 85657157 85657157 A G PDE8A Silent p.E413E 0.15 TCGA-EE-A3AB-06 15 89391246 89391246 A G ACAN Missense_Mutation p.Y570C 0.15 deleterious(0) unknown(0) TCGA-EE-A3AB-06 15 90771687 90771687 G A SEMA4B Missense_Mutation p.G776R 0.17 tolerated(0.14) possibly_damaging(0.812) TCGA-EE-A3AB-06 15 92669426 92669426 C T SLCO3A1 Missense_Mutation p.S437F 0.22 tolerated(0.29) probably_damaging(0.912) TCGA-EE-A3AB-06 15 92669427 92669427 C T SLCO3A1 Silent p.S437S 0.22 TCGA-EE-A3AB-06 15 99670852 99670852 G A SYNM Missense_Mutation p.E762K 0.28 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A3AB-06 16 1416299 1416299 G A UNKL Missense_Mutation p.P662L 0.47 tolerated(0.49) benign(0.01) TCGA-EE-A3AB-06 16 1416300 1416300 G A UNKL Missense_Mutation p.P662S 0.44 tolerated(0.93) benign(0.029) TCGA-EE-A3AB-06 16 19468184 19468184 G A TMC5 Intron 0.39 TCGA-EE-A3AB-06 16 20451162 20451162 C T ACSM5 Missense_Mutation p.S526F 0.37 deleterious(0.01) benign(0.109) TCGA-EE-A3AB-06 16 23505681 23505681 C G GGA2 Missense_Mutation p.W65C 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AB-06 16 23535664 23535664 G A EARS2 3'UTR 0.43 TCGA-EE-A3AB-06 16 2816259 2816259 A G SRRM2 Silent p.R1910R 0.21 TCGA-EE-A3AB-06 16 28331598 28331598 A G SBK1 Missense_Mutation p.T211A 0.32 deleterious(0.03) benign(0.374) TCGA-EE-A3AB-06 16 28493470 28493470 G A CLN3 Missense_Mutation p.R338C 0.31 tolerated(0.28) possibly_damaging(0.849) TCGA-EE-A3AB-06 16 28841310 28841310 C G ATXN2L Missense_Mutation p.T322S 0.34 tolerated(0.62) possibly_damaging(0.567) TCGA-EE-A3AB-06 16 30008161 30008161 A G INO80E Missense_Mutation p.N62S 0.24 tolerated(0.11) probably_damaging(0.979) TCGA-EE-A3AB-06 16 30535775 30535775 T C ZNF768 3'UTR 0.18 TCGA-EE-A3AB-06 16 30664151 30664151 C G PRR14 Missense_Mutation p.S101C 0.12 tolerated_low_confidence(0.06) benign(0.022) TCGA-EE-A3AB-06 16 30727652 30727652 T C SRCAP Missense_Mutation p.V890A 0.21 unknown(0) TCGA-EE-A3AB-06 16 31383790 31383790 C T ITGAX Missense_Mutation p.P751L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 16 31488683 31488683 C T TGFB1I1 Missense_Mutation p.P391L 0.32 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AB-06 16 3600437 3600437 C T NLRC3 Silent p.V850V 0.30 TCGA-EE-A3AB-06 16 48151211 48151211 C T ABCC12 Silent p.Q582Q 0.17 TCGA-EE-A3AB-06 16 4933858 4933858 T C PPL Missense_Mutation p.T1600A 0.21 tolerated(0.32) benign(0.007) TCGA-EE-A3AB-06 16 4938995 4938995 T C PPL Missense_Mutation p.Y794C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 16 50138886 50138886 C T HEATR3 Nonsense_Mutation p.Q653* 0.31 TCGA-EE-A3AB-06 16 55730157 55730157 C T SLC6A2 Silent p.L390L 0.17 TCGA-EE-A3AB-06 16 57116499 57116499 C T NLRC5 3'UTR 0.28 TCGA-EE-A3AB-06 16 57937785 57937785 G A CNGB1 Missense_Mutation p.S912F 0.45 deleterious(0.01) possibly_damaging(0.629) TCGA-EE-A3AB-06 16 70595631 70595631 T C SF3B3 Silent p.G744G 0.15 TCGA-EE-A3AB-06 16 81888101 81888101 C T PLCG2 Silent p.F82F 0.17 TCGA-EE-A3AB-06 16 81969853 81969853 C T PLCG2 Silent p.L974L 0.17 TCGA-EE-A3AB-06 16 85105396 85105396 T C KIAA0513 Silent p.L113L 0.15 TCGA-EE-A3AB-06 16 88052124 88052124 T C BANP Missense_Mutation p.I241T 0.18 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AB-06 16 89977638 89977638 T G TCF25 Missense_Mutation p.W675G 0.24 deleterious(0.01) possibly_damaging(0.792) TCGA-EE-A3AB-06 16 9009193 9009193 G A USP7 Silent p.I332I 0.30 TCGA-EE-A3AB-06 16 90162156 90162156 G A TUBB8P7 RNA 0.19 TCGA-EE-A3AB-06 16 9856977 9856977 C T GRIN2A 3'UTR 0.46 TCGA-EE-A3AB-06 17 10209911 10209911 C T MYH13 Silent p.Q1777Q 0.36 TCGA-EE-A3AB-06 17 11984809 11984809 A G MAP2K4 Missense_Mutation p.M119V 0.19 tolerated(0.13) probably_damaging(0.995) TCGA-EE-A3AB-06 17 1412538 1412538 T C INPP5K Missense_Mutation p.H163R 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3AB-06 17 1438752 1438752 A G PITPNA Silent p.L173L 0.11 TCGA-EE-A3AB-06 17 1538608 1538608 G A SCARF1 Missense_Mutation p.S646F 0.21 deleterious(0.03) benign(0.243) TCGA-EE-A3AB-06 17 1581892 1581892 A G PRPF8 Missense_Mutation p.Y592H 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A3AB-06 17 1678351 1678351 G A SERPINF1 Splice_Site p.X215_splice 0.37 TCGA-EE-A3AB-06 17 17179480 17179480 T C COPS3 Splice_Site p.X19_splice 0.22 TCGA-EE-A3AB-06 17 18193931 18193931 T C TOP3A Missense_Mutation p.S513G 0.09 deleterious(0) possibly_damaging(0.555) TCGA-EE-A3AB-06 17 18769241 18769241 T C PRPSAP2 Missense_Mutation p.M32T 0.19 tolerated(0.54) benign(0.002) TCGA-EE-A3AB-06 17 19645428 19645428 C T ALDH3A1 Missense_Mutation p.G193E 0.35 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AB-06 17 19645429 19645429 C T ALDH3A1 Missense_Mutation p.G193R 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AB-06 17 20013794 20013794 T A SPECC1 Missense_Mutation p.S68T 0.18 tolerated(0.16) benign(0.14) TCGA-EE-A3AB-06 17 26918858 26918858 T C SPAG5 Missense_Mutation p.H432R 0.36 tolerated(1) benign(0.002) TCGA-EE-A3AB-06 17 27240251 27240251 A G PHF12 Silent p.H446H 0.14 TCGA-EE-A3AB-06 17 33749398 33749398 C T SLFN12 Missense_Mutation p.R217Q 0.33 tolerated(0.44) probably_damaging(0.96) TCGA-EE-A3AB-06 17 37822321 37822321 T C TCAP Missense_Mutation p.S155P 0.08 deleterious(0.02) possibly_damaging(0.66) TCGA-EE-A3AB-06 17 39182924 39182924 A G KRTAP1-5 Missense_Mutation p.S162P 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A3AB-06 17 39538630 39538630 C T KRT34 5'UTR 0.31 TCGA-EE-A3AB-06 17 42959081 42959081 T C EFTUD2 Missense_Mutation p.T168A 0.13 deleterious(0.01) benign(0.159) TCGA-EE-A3AB-06 17 43194047 43194047 C T PLCD3 Silent p.V455V 0.25 TCGA-EE-A3AB-06 17 44096042 44096042 G A MAPT Silent p.S687S 0.33 TCGA-EE-A3AB-06 17 44952552 44952552 G A WNT9B Missense_Mutation p.M140I 0.36 tolerated(0.13) possibly_damaging(0.577) TCGA-EE-A3AB-06 17 45234395 45234395 A T CDC27 Silent p.P242P 0.15 TCGA-EE-A3AB-06 17 46423352 46423352 C T SKAP1 Silent p.Q65Q 0.41 TCGA-EE-A3AB-06 17 46940288 46940288 A G CALCOCO2 Missense_Mutation p.N445S 0.21 tolerated(0.26) benign(0.006) TCGA-EE-A3AB-06 17 47247031 47247031 C A B4GALNT2 Silent p.R548R 0.16 TCGA-EE-A3AB-06 17 47376209 47376209 G A ZNF652 Missense_Mutation p.H463Y 0.35 deleterious(0) possibly_damaging(0.767) TCGA-EE-A3AB-06 17 4789488 4789488 G A MINK1 Silent p.K256K 0.36 TCGA-EE-A3AB-06 17 48051170 48051170 C T DLX4 Missense_Mutation p.P196S 0.27 tolerated(0.08) possibly_damaging(0.503) TCGA-EE-A3AB-06 17 48051171 48051171 C T DLX4 Missense_Mutation p.P196L 0.26 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AB-06 17 4805161 4805161 T C C17orf107 3'UTR 0.19 TCGA-EE-A3AB-06 17 48681523 48681523 A G CACNA1G Missense_Mutation p.S1393G 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 17 4880474 4880474 C T CAMTA2 Silent p.G616G 0.16 TCGA-EE-A3AB-06 17 4883061 4883061 G A CAMTA2 Missense_Mutation p.P542L 0.28 deleterious(0.02) benign(0.14) TCGA-EE-A3AB-06 17 5486148 5486148 G A NLRP1 Missense_Mutation p.P97L 0.25 tolerated(0.69) benign(0.001) TCGA-EE-A3AB-06 17 56604107 56604107 G A SEPT4 Missense_Mutation p.P113L 0.33 deleterious(0.01) possibly_damaging(0.758) TCGA-EE-A3AB-06 17 57644043 57644043 G A DHX40 Silent p.Q56Q 0.29 TCGA-EE-A3AB-06 17 58756885 58756885 C T BCAS3 Missense_Mutation p.R23C 0.38 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A3AB-06 17 61949648 61949648 G A CSH2 Silent p.I164I 0.25 TCGA-EE-A3AB-06 17 62022736 62022736 A C SCN4A Missense_Mutation p.L1235R 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 17 62038588 62038588 C T SCN4A Missense_Mutation p.E604K 0.38 tolerated(0.38) benign(0.211) TCGA-EE-A3AB-06 17 65890239 65890239 T C BPTF Missense_Mutation p.V834A 0.17 probably_damaging(0.997) TCGA-EE-A3AB-06 17 67079155 67079155 C T ABCA6 Splice_Site p.X1492_splice 0.27 TCGA-EE-A3AB-06 17 7140086 7140086 C A PHF23 Nonsense_Mutation p.E54* 0.08 TCGA-EE-A3AB-06 17 7228139 7228139 T C NEURL4 Missense_Mutation p.T598A 0.36 deleterious(0) possibly_damaging(0.504) TCGA-EE-A3AB-06 17 72469917 72469917 G A CD300A Missense_Mutation p.E95K 0.29 tolerated(0.13) benign(0.174) TCGA-EE-A3AB-06 17 72862251 72862251 A G FDXR Splice_Site p.X212_splice 0.13 TCGA-EE-A3AB-06 17 73125021 73125021 T G ARMC7 Missense_Mutation p.I162S 0.12 tolerated(0.05) benign(0.421) TCGA-EE-A3AB-06 17 73164463 73164463 A G SUMO2 Missense_Mutation p.F87L 0.52 deleterious(0.04) benign(0.041) TCGA-EE-A3AB-06 17 7319039 7319039 A G NLGN2 Missense_Mutation p.N416S 0.27 tolerated(0.39) probably_damaging(0.958) TCGA-EE-A3AB-06 17 73229030 73229030 A G NUP85 Missense_Mutation p.K494R 0.16 tolerated(0.08) benign(0.053) TCGA-EE-A3AB-06 17 73238472 73238472 A G GGA3 Missense_Mutation p.M231T 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 17 73520462 73520462 A G TSEN54 Missense_Mutation p.D517G 0.09 deleterious(0) possibly_damaging(0.899) TCGA-EE-A3AB-06 17 73908360 73908360 A G FBF1 Silent p.R1077R 0.14 TCGA-EE-A3AB-06 17 74005598 74005598 C T EVPL Missense_Mutation p.E1230K 0.36 tolerated(0.1) possibly_damaging(0.627) TCGA-EE-A3AB-06 17 76967853 76967853 T C LGALS3BP Silent p.K521K 0.18 TCGA-EE-A3AB-06 17 7750137 7750137 A G KDM6B Missense_Mutation p.T238A 0.23 unknown(0) TCGA-EE-A3AB-06 17 78163555 78163555 G A CARD14 Missense_Mutation p.E283K 0.29 tolerated(0.15) possibly_damaging(0.656) TCGA-EE-A3AB-06 17 78410052 78410052 C G ENDOV 3'UTR 0.48 TCGA-EE-A3AB-06 17 79202796 79202796 A G ENTHD2 Missense_Mutation p.S504P 0.15 tolerated(0.06) benign(0.025) TCGA-EE-A3AB-06 17 79658481 79658481 A G HGS Missense_Mutation p.H181R 0.17 deleterious(0.01) benign(0.089) TCGA-EE-A3AB-06 17 79805189 79805189 A G P4HB Missense_Mutation p.V220A 0.11 tolerated(0.28) benign(0.02) TCGA-EE-A3AB-06 17 79864054 79864054 C T PCYT2 Splice_Site p.X272_splice 0.18 TCGA-EE-A3AB-06 18 21819272 21819272 A C OSBPL1A Silent p.T452T 0.19 TCGA-EE-A3AB-06 18 28654804 28654804 G A DSC2 Missense_Mutation p.P578L 0.22 tolerated(0.79) benign(0.004) TCGA-EE-A3AB-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.35 benign(0.006) TCGA-EE-A3AB-06 18 34850819 34850819 C T CELF4 Silent p.G337G 0.33 TCGA-EE-A3AB-06 18 46284513 46284513 A G CTIF Missense_Mutation p.N270D 0.43 deleterious_low_confidence(0.02) benign(0.07) TCGA-EE-A3AB-06 18 50278479 50278479 C T DCC Silent p.A49A 0.45 TCGA-EE-A3AB-06 18 52921859 52921859 G A TCF4 Missense_Mutation p.P509S 0.45 tolerated(0.36) benign(0.115) TCGA-EE-A3AB-06 18 55273959 55273959 A G NARS Silent p.C342C 0.19 TCGA-EE-A3AB-06 18 63481720 63481720 G A CDH7 Splice_Site p.X169_splice 0.36 TCGA-EE-A3AB-06 18 63547870 63547870 A C CDH7 Missense_Mutation p.S700R 0.22 tolerated(0.46) benign(0.02) TCGA-EE-A3AB-06 18 66354936 66354936 T C TMX3 Missense_Mutation p.D235G 0.12 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AB-06 18 71920773 71920773 C T CYB5A 3'UTR 0.17 TCGA-EE-A3AB-06 18 72109238 72109238 A G FAM69C Silent p.C330C 0.28 TCGA-EE-A3AB-06 18 724378 724378 T C YES1 3'UTR 0.24 TCGA-EE-A3AB-06 18 77894959 77894959 C T ADNP2 Missense_Mutation p.P555S 0.23 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A3AB-06 18 8379253 8379253 A G PTPRM Missense_Mutation p.D1234G 0.16 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AB-06 19 10793271 10793271 A G ILF3 Missense_Mutation p.E480G 0.12 tolerated(0.07) benign(0.175) TCGA-EE-A3AB-06 19 11793485 11793485 T C ZNF833P Intron 0.09 TCGA-EE-A3AB-06 19 11942549 11942549 T C ZNF440 Silent p.S186S 0.15 TCGA-EE-A3AB-06 19 1220689 1220689 T C STK11 Missense_Mutation p.V236A 0.26 tolerated(0.08) probably_damaging(1) TCGA-EE-A3AB-06 19 1230911 1230911 T C C19orf26 Missense_Mutation p.K448R 0.10 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EE-A3AB-06 19 12784099 12784099 A G WDR83 Missense_Mutation p.D256G 0.25 deleterious(0.01) possibly_damaging(0.868) TCGA-EE-A3AB-06 19 14512300 14512300 C T CD97 Missense_Mutation p.L334F 0.30 deleterious(0.01) benign(0.167) TCGA-EE-A3AB-06 19 16204522 16204522 G C TPM4 Missense_Mutation p.R244T 0.15 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AB-06 19 1828589 1828589 G A REXO1 Missense_Mutation p.P67S 0.21 tolerated(0.51) benign(0.042) TCGA-EE-A3AB-06 19 19905427 19905427 T C ZNF506 Silent p.K423K 0.13 TCGA-EE-A3AB-06 19 21300877 21300877 A G ZNF714 Silent p.K469K 0.19 TCGA-EE-A3AB-06 19 2226269 2226269 A G DOT1L Missense_Mutation p.D1250G 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A3AB-06 19 3193415 3193415 C T NCLN Missense_Mutation p.S170F 0.38 deleterious(0.01) benign(0.399) TCGA-EE-A3AB-06 19 34959991 34959991 T C UBA2 Silent p.D596D 0.17 TCGA-EE-A3AB-06 19 3496859 3496859 A G DOHH 5'UTR 0.23 TCGA-EE-A3AB-06 19 36051443 36051443 C T ATP4A Silent p.E203E 0.36 TCGA-EE-A3AB-06 19 36330311 36330311 G A NPHS1 Silent p.A979A 0.30 TCGA-EE-A3AB-06 19 36357219 36357219 C T KIRREL2 Missense_Mutation p.P651L 0.22 tolerated(0.1) benign(0.075) TCGA-EE-A3AB-06 19 36430468 36430468 G A LRFN3 Silent p.G47G 0.36 TCGA-EE-A3AB-06 19 39322081 39322081 G A ECH1 Missense_Mutation p.S43F 0.27 tolerated_low_confidence(0.1) benign(0.003) TCGA-EE-A3AB-06 19 39380777 39380777 T C SIRT2 Silent p.R78R 0.17 TCGA-EE-A3AB-06 19 39998785 39998785 T C DLL3 3'UTR 0.19 TCGA-EE-A3AB-06 19 40421287 40421287 C T FCGBP Silent p.R878R 0.21 TCGA-EE-A3AB-06 19 41066351 41066351 G A SPTBN4 Intron 0.26 TCGA-EE-A3AB-06 19 41125251 41125251 G A LTBP4 Splice_Site p.X1090_splice 0.31 TCGA-EE-A3AB-06 19 42223904 42223904 G A CEACAM5 Silent p.K516K 0.18 TCGA-EE-A3AB-06 19 42753179 42753179 G A ERF Missense_Mutation p.S362F 0.14 tolerated_low_confidence(0.71) possibly_damaging(0.485) TCGA-EE-A3AB-06 19 42930869 42930869 C T LIPE Missense_Mutation p.E145K 0.50 tolerated_low_confidence(0.41) benign(0.001) TCGA-EE-A3AB-06 19 43269725 43269725 G A PSG8 Silent p.L3L 0.33 TCGA-EE-A3AB-06 19 44001219 44001219 G T PHLDB3 Intron 0.36 TCGA-EE-A3AB-06 19 44058832 44058832 C A XRCC1 Missense_Mutation p.R127L 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A3AB-06 19 44891897 44891897 G A ZNF285 Silent p.Y170Y 0.21 TCGA-EE-A3AB-06 19 46124524 46124524 T C EML2 Missense_Mutation p.T556A 0.23 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AB-06 19 46215522 46215522 A G FBXO46 Missense_Mutation p.L411P 0.22 deleterious(0) probably_damaging(0.955) TCGA-EE-A3AB-06 19 46287381 46287381 A G DMWD 3'UTR 0.28 TCGA-EE-A3AB-06 19 47656285 47656285 A G SAE1 Missense_Mutation p.H172R 0.11 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AB-06 19 47998732 47998732 T C NAPA Intron 0.13 TCGA-EE-A3AB-06 19 49536353 49536353 G A CGB2 Missense_Mutation p.D123N 0.36 tolerated(0.57) benign(0.005) TCGA-EE-A3AB-06 19 52001489 52001489 G A SIGLEC12 Silent p.S396S 0.49 TCGA-EE-A3AB-06 19 54544314 54544314 C T VSTM1 Silent p.V204V 0.21 TCGA-EE-A3AB-06 19 54969155 54969155 A T LENG8 Missense_Mutation p.T626S 0.19 deleterious(0.01) possibly_damaging(0.89) TCGA-EE-A3AB-06 19 55142722 55142722 G A LILRB1 Missense_Mutation p.G12E 0.31 deleterious(0.01) possibly_damaging(0.859) TCGA-EE-A3AB-06 19 55142723 55142723 G A LILRB1 Silent p.G12G 0.31 TCGA-EE-A3AB-06 19 56515263 56515263 G A NLRP5 Missense_Mutation p.E82K 0.37 tolerated(0.28) benign(0.016) TCGA-EE-A3AB-06 19 57065549 57065549 A G ZFP28 Silent p.R465R 0.16 TCGA-EE-A3AB-06 19 5772937 5772937 G A CATSPERD Missense_Mutation p.M634I 0.47 tolerated(1) benign(0.002) TCGA-EE-A3AB-06 19 5772944 5772944 G A CATSPERD Missense_Mutation p.E637K 0.43 tolerated(0.82) benign(0.108) TCGA-EE-A3AB-06 19 58596343 58596343 G A ZSCAN18 Silent p.A470A 0.36 TCGA-EE-A3AB-06 19 58596344 58596344 G A ZSCAN18 Missense_Mutation p.A470V 0.36 tolerated(0.72) benign(0.015) TCGA-EE-A3AB-06 19 5867711 5867711 G A FUT5 Missense_Mutation p.P9L 0.24 tolerated(0.74) benign(0.003) TCGA-EE-A3AB-06 19 58944838 58944838 A G ZNF132 Missense_Mutation p.I658T 0.17 tolerated(0.17) benign(0.012) TCGA-EE-A3AB-06 19 6913831 6913831 G A EMR1 Silent p.T430T 0.15 TCGA-EE-A3AB-06 19 6913832 6913832 G A EMR1 Missense_Mutation p.E431K 0.16 tolerated(0.24) benign(0.007) TCGA-EE-A3AB-06 19 7685759 7685759 G A XAB2 Silent p.T648T 0.42 TCGA-EE-A3AB-06 19 7992167 7992167 C T TIMM44 Missense_Mutation p.V422M 0.21 deleterious(0.02) benign(0.121) TCGA-EE-A3AB-06 19 814959 814959 A G LPPR3 Missense_Mutation p.S176P 0.46 tolerated(0.1) probably_damaging(0.972) TCGA-EE-A3AB-06 19 8190870 8190870 G A FBN3 Silent p.V879V 0.33 TCGA-EE-A3AB-06 19 8595445 8595445 C T MYO1F Missense_Mutation p.E686K 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 19 8595446 8595446 C T MYO1F Silent p.L685L 0.27 TCGA-EE-A3AB-06 19 9046787 9046787 C G MUC16 Missense_Mutation p.R11615T 0.31 benign(0.003) TCGA-EE-A3AB-06 19 9075993 9075993 G A MUC16 Missense_Mutation p.P3818L 0.13 unknown(0) TCGA-EE-A3AB-06 19 9075994 9075994 G A MUC16 Missense_Mutation p.P3818S 0.13 unknown(0) TCGA-EE-A3AB-06 19 9086883 9086883 G A MUC16 Silent p.T1644T 0.39 TCGA-EE-A3AB-06 1 102269986 102269986 C T OLFM3 Silent p.K395K 0.62 TCGA-EE-A3AB-06 1 10683172 10683172 C T PEX14 Nonsense_Mutation p.Q161* 0.27 TCGA-EE-A3AB-06 1 110018237 110018237 C T SYPL2 Missense_Mutation p.S55F 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 1 111825929 111825929 C T CHIAP2 RNA 0.47 TCGA-EE-A3AB-06 1 115137163 115137163 G A DENND2C Nonsense_Mutation p.Q788* 0.34 TCGA-EE-A3AB-06 1 115272916 115272916 T C CSDE1 Missense_Mutation p.N486S 0.11 tolerated(0.62) benign(0.004) TCGA-EE-A3AB-06 1 117214427 117214427 G A IGSF3 5'Flank 0.33 TCGA-EE-A3AB-06 1 13036565 13036565 G A PRAMEF22 Missense_Mutation p.E213K 0.13 deleterious(0.04) possibly_damaging(0.686) TCGA-EE-A3AB-06 1 144852413 144852413 A G PDE4DIP Missense_Mutation p.S2344P 0.07 tolerated(0.15) benign(0.001) TCGA-EE-A3AB-06 1 144874773 144874773 A C PDE4DIP Missense_Mutation p.F1612C 0.09 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AB-06 1 145273357 145273357 T C NOTCH2NL Missense_Mutation p.F71L 0.09 tolerated(0.54) benign(0.238) TCGA-EE-A3AB-06 1 147131117 147131117 T C ACP6 Missense_Mutation p.T173A 0.15 tolerated(0.53) benign(0.012) TCGA-EE-A3AB-06 1 149857936 149857936 G C HIST2H2BE Missense_Mutation p.N85K 0.09 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EE-A3AB-06 1 152130303 152130303 C T RPTN Silent p.G21G 0.69 TCGA-EE-A3AB-06 1 152191823 152191823 T G HRNR Missense_Mutation p.Q761P 0.17 unknown(0) TCGA-EE-A3AB-06 1 152648729 152648729 C T LCE2C Missense_Mutation p.L80F 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A3AB-06 1 153533735 153533735 G A S100A2 3'UTR 0.88 TCGA-EE-A3AB-06 1 153533736 153533736 G A S100A2 3'UTR 0.88 TCGA-EE-A3AB-06 1 154067420 154067420 T G NUP210L Missense_Mutation p.L726F 0.35 tolerated(0.07) possibly_damaging(0.796) TCGA-EE-A3AB-06 1 154164465 154164465 C T TPM3 Silent p.Q10Q 0.79 TCGA-EE-A3AB-06 1 154317948 154317948 A G ATP8B2 Missense_Mutation p.Y907C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 1 156281870 156281870 T C CCT3 Missense_Mutation p.T373A 0.35 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AB-06 1 156721085 156721085 T C HDGF Intron 0.38 TCGA-EE-A3AB-06 1 158576476 158576476 C T OR10Z1 Missense_Mutation p.S83F 0.78 tolerated(0.72) benign(0.002) TCGA-EE-A3AB-06 1 159273870 159273870 A C FCER1A Missense_Mutation p.S77R 0.13 tolerated(0.7) benign(0.004) TCGA-EE-A3AB-06 1 160969507 160969507 G A F11R Missense_Mutation p.A242V 0.40 deleterious(0) probably_damaging(0.961) TCGA-EE-A3AB-06 1 161018416 161018416 C G ARHGAP30 Missense_Mutation p.D799H 0.04 tolerated_low_confidence(0.12) benign(0.232) TCGA-EE-A3AB-06 1 16259522 16259522 A T SPEN Missense_Mutation p.M2263L 0.19 benign(0.001) TCGA-EE-A3AB-06 1 169796270 169796270 A G C1orf112 Silent p.T309T 0.06 TCGA-EE-A3AB-06 1 173962102 173962102 A G RC3H1 Missense_Mutation p.W8R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 1 177001820 177001820 C T ASTN1 Missense_Mutation p.G213R 0.17 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-EE-A3AB-06 1 185276662 185276662 T A IVNS1ABP Missense_Mutation p.I164F 0.09 deleterious(0.01) possibly_damaging(0.857) TCGA-EE-A3AB-06 1 186291519 186291519 T C TPR Missense_Mutation p.D2131G 0.17 probably_damaging(0.98) TCGA-EE-A3AB-06 1 186291528 186291528 T C TPR Missense_Mutation p.D2128G 0.23 benign(0.104) TCGA-EE-A3AB-06 1 18809104 18809104 C A KLHDC7A Missense_Mutation p.F543L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 1 201750364 201750364 G A NAV1 Silent p.K530K 0.44 TCGA-EE-A3AB-06 1 203452498 203452498 C T PRELP Silent p.L62L 0.55 TCGA-EE-A3AB-06 1 204438620 204438620 T C PIK3C2B Missense_Mutation p.N104S 0.18 tolerated_low_confidence(0.25) benign(0.016) TCGA-EE-A3AB-06 1 205273082 205273082 G A NUAK2 Silent p.S461S 0.15 TCGA-EE-A3AB-06 1 205273083 205273083 G A NUAK2 Missense_Mutation p.S461F 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 1 205688709 205688709 A G NUCKS1 Missense_Mutation p.S160P 0.09 deleterious(0.05) benign(0.025) TCGA-EE-A3AB-06 1 208218052 208218052 C T PLXNA2 Silent p.S1225S 0.23 TCGA-EE-A3AB-06 1 211956806 211956806 C T LPGAT1 Silent p.K164K 0.18 TCGA-EE-A3AB-06 1 212519229 212519229 G T PPP2R5A Nonsense_Mutation p.G220* 0.14 TCGA-EE-A3AB-06 1 212977941 212977941 T C TATDN3 Silent p.N145N 0.26 TCGA-EE-A3AB-06 1 214705863 214705863 G A PTPN14 Intron 0.37 TCGA-EE-A3AB-06 1 214705864 214705864 G A PTPN14 Intron 0.34 TCGA-EE-A3AB-06 1 214826299 214826299 T C CENPF Silent p.T2763T 0.11 TCGA-EE-A3AB-06 1 214830532 214830532 T C CENPF Silent p.P2914P 0.10 TCGA-EE-A3AB-06 1 215847853 215847853 G A USH2A Missense_Mutation p.P4467L 0.17 probably_damaging(1) TCGA-EE-A3AB-06 1 215972263 215972263 T A USH2A Missense_Mutation p.Y3315F 0.14 benign(0.078) TCGA-EE-A3AB-06 1 216850609 216850609 C T ESRRG Missense_Mutation p.S99N 0.17 tolerated(0.22) benign(0) TCGA-EE-A3AB-06 1 220825467 220825467 G C MARK1 Missense_Mutation p.D571H 0.11 deleterious(0.03) probably_damaging(0.929) TCGA-EE-A3AB-06 1 222705417 222705417 C T HHIPL2 Silent p.K538K 0.18 TCGA-EE-A3AB-06 1 223156451 223156451 G A DISP1 Missense_Mutation p.S180N 0.30 tolerated(0.06) benign(0.103) TCGA-EE-A3AB-06 1 223286155 223286155 C T TLR5 Silent p.Q73Q 0.30 TCGA-EE-A3AB-06 1 228399500 228399500 T C OBSCN Missense_Mutation p.F6L 0.23 benign(0.313) TCGA-EE-A3AB-06 1 22927261 22927261 G A EPHA8 Silent p.L832L 0.14 TCGA-EE-A3AB-06 1 237580394 237580394 C T RYR2 Silent p.S273S 0.50 TCGA-EE-A3AB-06 1 24454758 24454758 C T IL22RA1 Silent p.G181G 0.52 TCGA-EE-A3AB-06 1 247264023 247264023 G A ZNF669 Missense_Mutation p.R350C 0.12 deleterious(0.01) possibly_damaging(0.848) TCGA-EE-A3AB-06 1 248402405 248402405 A G OR2M4 Missense_Mutation p.M59V 0.09 deleterious(0) possibly_damaging(0.762) TCGA-EE-A3AB-06 1 26691406 26691406 G T ZNF683 Missense_Mutation p.L211I 0.30 deleterious(0.04) probably_damaging(0.947) TCGA-EE-A3AB-06 1 33149745 33149745 A G RBBP4 3'UTR 0.21 TCGA-EE-A3AB-06 1 35227570 35227570 C T GJB4 Missense_Mutation p.L239F 0.37 tolerated(0.09) benign(0.11) TCGA-EE-A3AB-06 1 38304397 38304397 T C MTF1 Missense_Mutation p.K227E 0.25 tolerated(0.19) benign(0.243) TCGA-EE-A3AB-06 1 39321398 39321398 A G RRAGC Missense_Mutation p.L208P 0.10 deleterious(0) possibly_damaging(0.703) TCGA-EE-A3AB-06 1 39322586 39322586 C G RRAGC Missense_Mutation p.G136R 0.28 tolerated(0.11) benign(0.036) TCGA-EE-A3AB-06 1 43396814 43396814 T C SLC2A1 Missense_Mutation p.T60A 0.21 tolerated(0.46) benign(0.005) TCGA-EE-A3AB-06 1 43664298 43664298 C T WDR65 Missense_Mutation p.S470F 0.60 deleterious(0.01) possibly_damaging(0.6) TCGA-EE-A3AB-06 1 45232824 45232824 A G KIF2C Silent p.Q717Q 0.27 TCGA-EE-A3AB-06 1 46650955 46650955 T C TSPAN1 Missense_Mutation p.V218A 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3AB-06 1 47717465 47717465 C A STIL Silent p.L1070L 0.51 TCGA-EE-A3AB-06 1 52956469 52956469 T C ZCCHC11 Silent p.L441L 0.63 TCGA-EE-A3AB-06 1 67208756 67208756 G A SGIP1 Missense_Mutation p.G822E 0.64 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A3AB-06 1 70781180 70781180 A G ANKRD13C Missense_Mutation p.L216S 0.16 deleterious(0.04) possibly_damaging(0.459) TCGA-EE-A3AB-06 1 78433885 78433885 G A FUBP1 Nonsense_Mutation p.Q72* 0.16 TCGA-EE-A3AB-06 1 85397205 85397205 T C MCOLN2 Missense_Mutation p.N461S 0.19 deleterious(0) probably_damaging(0.947) TCGA-EE-A3AB-06 1 9932037 9932037 A G CTNNBIP1 Missense_Mutation p.M29T 0.22 deleterious(0) possibly_damaging(0.579) TCGA-EE-A3AB-06 20 139425 139425 A G DEFB127 Silent p.Q20Q 0.12 TCGA-EE-A3AB-06 20 18523695 18523695 T C SEC23B Missense_Mutation p.I515T 0.17 deleterious(0.02) benign(0.175) TCGA-EE-A3AB-06 20 23476568 23476568 C T CST8 3'UTR 0.27 TCGA-EE-A3AB-06 20 2636679 2636679 A G NOP56 Missense_Mutation p.R337G 0.18 deleterious(0.01) possibly_damaging(0.722) TCGA-EE-A3AB-06 20 29847290 29847290 G A DEFB115 Missense_Mutation p.G41E 0.25 deleterious(0.03) possibly_damaging(0.479) TCGA-EE-A3AB-06 20 30730789 30730789 A G TM9SF4 Missense_Mutation p.Y178C 0.13 deleterious(0.04) probably_damaging(0.976) TCGA-EE-A3AB-06 20 36641607 36641607 A G TTI1 Silent p.D204D 0.14 TCGA-EE-A3AB-06 20 37547330 37547330 G A PPP1R16B 3'UTR 0.25 TCGA-EE-A3AB-06 20 41400105 41400105 C T PTPRT Silent p.K218K 0.31 TCGA-EE-A3AB-06 20 43615861 43615861 T C STK4 Missense_Mutation p.I150T 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 20 44708057 44708057 T C NCOA5 Missense_Mutation p.T3A 0.16 tolerated_low_confidence(0.11) benign(0.341) TCGA-EE-A3AB-06 20 45130666 45130666 A G ZNF334 Missense_Mutation p.C438R 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 20 47695141 47695141 T C CSE1L Silent p.I488I 0.23 TCGA-EE-A3AB-06 20 47740945 47740945 A G STAU1 Silent p.P263P 0.14 TCGA-EE-A3AB-06 20 47851535 47851535 A G DDX27 Missense_Mutation p.H477R 0.22 deleterious(0.03) probably_damaging(0.991) TCGA-EE-A3AB-06 20 50407061 50407061 G A SALL4 Missense_Mutation p.P654L 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AB-06 20 54575886 54575886 A G CBLN4 Silent p.G103G 0.16 TCGA-EE-A3AB-06 20 57415886 57415886 T C RP4-806M20.3 5'Flank 0.20 TCGA-EE-A3AB-06 20 57828170 57828170 G A ZNF831 Missense_Mutation p.E1389K 0.32 tolerated(0.09) benign(0.307) TCGA-EE-A3AB-06 20 590585 590585 G C TCF15 Missense_Mutation p.I99M 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 20 61833649 61833649 A G YTHDF1 Missense_Mutation p.V548A 0.11 tolerated(0.76) benign(0.021) TCGA-EE-A3AB-06 20 62222007 62222007 A G GMEB2 Missense_Mutation p.V343A 0.24 deleterious(0) possibly_damaging(0.81) TCGA-EE-A3AB-06 20 62326722 62326722 A G RTEL1 Missense_Mutation p.I1205V 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-EE-A3AB-06 21 15561379 15561379 C T LIPI Silent p.L157L 0.26 TCGA-EE-A3AB-06 21 31692118 31692118 G A KRTAP26-1 Missense_Mutation p.S79F 0.31 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AB-06 21 34951723 34951723 A G DONSON Missense_Mutation p.V499A 0.20 tolerated(0.98) benign(0.003) TCGA-EE-A3AB-06 21 35276277 35276277 A G ATP5O Missense_Mutation p.F164L 0.09 deleterious(0.04) benign(0.061) TCGA-EE-A3AB-06 21 35469584 35469584 T A SLC5A3 Missense_Mutation p.V696E 0.13 tolerated(0.26) benign(0.019) TCGA-EE-A3AB-06 21 37617664 37617664 C T DOPEY2 Missense_Mutation p.S1129F 0.29 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AB-06 21 38877829 38877829 A G DYRK1A Missense_Mutation p.T495A 0.12 deleterious(0.04) benign(0.011) TCGA-EE-A3AB-06 21 38877845 38877845 A T DYRK1A Missense_Mutation p.E500V 0.12 tolerated(0.15) benign(0.071) TCGA-EE-A3AB-06 21 38877863 38877863 G T DYRK1A Missense_Mutation p.G506V 0.11 tolerated(0.08) possibly_damaging(0.76) TCGA-EE-A3AB-06 21 45379564 45379564 T C AGPAT3 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 21 45970531 45970531 G A KRTAP10-2 3'UTR 0.20 TCGA-EE-A3AB-06 22 16267094 16267094 A G POTEH Missense_Mutation p.V452A 0.10 tolerated_low_confidence(0.26) benign(0.006) TCGA-EE-A3AB-06 22 19125788 19125788 G A DGCR14 Missense_Mutation p.P289S 0.23 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AB-06 22 19125789 19125789 G A DGCR14 Silent p.I288I 0.23 TCGA-EE-A3AB-06 22 19799823 19799823 C T GNB1L Silent p.G134G 0.30 TCGA-EE-A3AB-06 22 21068917 21068917 T C PI4KA Missense_Mutation p.S1797G 0.07 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AB-06 22 21165308 21165308 C G PI4KA Missense_Mutation p.V340L 0.13 tolerated(1) benign(0.004) TCGA-EE-A3AB-06 22 23524006 23524006 A G BCR Missense_Mutation p.M287V 0.17 tolerated_low_confidence(0.32) benign(0.067) TCGA-EE-A3AB-06 22 24036084 24036084 A G RGL4 Missense_Mutation p.T279A 0.39 tolerated(0.28) possibly_damaging(0.679) TCGA-EE-A3AB-06 22 26231332 26231332 C T MYO18B Missense_Mutation p.H1044Y 0.28 deleterious(0.02) benign(0.002) TCGA-EE-A3AB-06 22 32479097 32479097 A G SLC5A1 Missense_Mutation p.Q207R 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 22 36902055 36902055 G A FOXRED2 Missense_Mutation p.R139C 0.28 deleterious(0.01) possibly_damaging(0.773) TCGA-EE-A3AB-06 22 38882385 38882385 T C DDX17 Missense_Mutation p.D584G 0.17 tolerated_low_confidence(0.14) benign(0.02) TCGA-EE-A3AB-06 22 42609176 42609176 A G TCF20 Silent p.S712S 0.14 TCGA-EE-A3AB-06 22 42609368 42609368 A G TCF20 Silent p.S648S 0.20 TCGA-EE-A3AB-06 22 46929665 46929665 A G CELSR1 Missense_Mutation p.S1135P 0.18 deleterious(0) benign(0.039) TCGA-EE-A3AB-06 22 50216618 50216618 G A BRD1 Missense_Mutation p.P450S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 2 103040432 103040432 G A IL18RAP Missense_Mutation p.D78N 0.34 tolerated(0.42) benign(0.006) TCGA-EE-A3AB-06 2 103040583 103040583 C T IL18RAP Missense_Mutation p.P128L 0.40 tolerated(0.31) benign(0.118) TCGA-EE-A3AB-06 2 122519010 122519010 T G TSN Missense_Mutation p.L95V 0.19 tolerated(0.46) benign(0.441) TCGA-EE-A3AB-06 2 132010545 132010545 G A POTEE Missense_Mutation p.G551R 0.22 tolerated_low_confidence(0.31) probably_damaging(0.956) TCGA-EE-A3AB-06 2 132290319 132290319 G A CCDC74A Missense_Mutation p.E281K 0.32 deleterious(0.01) benign(0.05) TCGA-EE-A3AB-06 2 152299813 152299813 A G RIF1 Missense_Mutation p.N592S 0.07 tolerated(0.19) benign(0.18) TCGA-EE-A3AB-06 2 167328864 167328864 G A SCN7A Missense_Mutation p.P179S 0.32 deleterious(0.01) benign(0.152) TCGA-EE-A3AB-06 2 168099252 168099252 A G XIRP2 Silent p.E450E 0.14 TCGA-EE-A3AB-06 2 169764639 169764639 C T G6PC2 3'UTR 0.37 TCGA-EE-A3AB-06 2 169814520 169814520 C T ABCB11 Missense_Mutation p.G766E 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AB-06 2 174047583 174047583 A G MLTK Silent p.E83E 0.25 TCGA-EE-A3AB-06 2 174230312 174230312 C G CDCA7 Missense_Mutation p.R343G 0.08 deleterious(0.03) benign(0.068) TCGA-EE-A3AB-06 2 179528166 179528166 T C TTN Missense_Mutation p.T12204A 0.12 TCGA-EE-A3AB-06 2 179549111 179549111 C T TTN Missense_Mutation p.E10890K 0.20 TCGA-EE-A3AB-06 2 179569002 179569002 C T TTN Missense_Mutation p.G10032D 0.28 TCGA-EE-A3AB-06 2 179569003 179569003 C T TTN Missense_Mutation p.G10032S 0.28 TCGA-EE-A3AB-06 2 179598380 179598380 C G TTN Missense_Mutation p.A5246P 0.17 TCGA-EE-A3AB-06 2 179610805 179610805 C T TTN Intron 0.34 TCGA-EE-A3AB-06 2 179611474 179611474 C T TTN Intron 0.33 TCGA-EE-A3AB-06 2 184025909 184025909 C T NUP35 3'UTR 0.36 TCGA-EE-A3AB-06 2 18768805 18768805 C T NT5C1B Silent p.K28K 0.33 TCGA-EE-A3AB-06 2 187692816 187692816 C T ZSWIM2 Silent p.G599G 0.35 TCGA-EE-A3AB-06 2 189922126 189922126 C G COL5A2 Missense_Mutation p.G753R 0.32 unknown(0) TCGA-EE-A3AB-06 2 197645259 197645259 T A GTF3C3 Intron 0.22 TCGA-EE-A3AB-06 2 198571316 198571316 A G MARS2 Missense_Mutation p.N396S 0.13 deleterious(0) possibly_damaging(0.514) TCGA-EE-A3AB-06 2 201464442 201464442 C T AOX1 Silent p.L137L 0.35 TCGA-EE-A3AB-06 2 203765755 203765755 A G WDR12 Missense_Mutation p.I75T 0.04 deleterious(0.04) benign(0.013) TCGA-EE-A3AB-06 2 206659854 206659854 C T NRP2 3'UTR 0.30 TCGA-EE-A3AB-06 2 206980946 206980946 G A AC007383.4 RNA 0.35 TCGA-EE-A3AB-06 2 207171150 207171150 G A ZDBF2 Missense_Mutation p.G633E 0.32 tolerated(1) probably_damaging(0.986) TCGA-EE-A3AB-06 2 209150622 209150622 T C PIKFYVE Silent p.R262R 0.20 TCGA-EE-A3AB-06 2 209198163 209198163 T C PIKFYVE Missense_Mutation p.I1363T 0.10 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A3AB-06 2 21232936 21232936 C G APOB Missense_Mutation p.Q2268H 0.05 benign(0.012) TCGA-EE-A3AB-06 2 21235215 21235215 G A APOB Missense_Mutation p.P1509S 0.36 benign(0.005) TCGA-EE-A3AB-06 2 219301904 219301904 A G VIL1 Missense_Mutation p.T677A 0.22 tolerated(0.22) benign(0.021) TCGA-EE-A3AB-06 2 219603140 219603140 C T TTLL4 Silent p.I247I 0.33 TCGA-EE-A3AB-06 2 220047320 220047320 A G FAM134A Missense_Mutation p.D534G 0.12 tolerated_low_confidence(0.07) benign(0.006) TCGA-EE-A3AB-06 2 228155481 228155481 G A COL4A3 Missense_Mutation p.G1030E 0.26 unknown(0) TCGA-EE-A3AB-06 2 232645820 232645820 G A PDE6D Missense_Mutation p.S2L 0.17 deleterious_low_confidence(0.03) benign(0.007) TCGA-EE-A3AB-06 2 233396253 233396253 T C CHRND Missense_Mutation p.F312L 0.15 deleterious(0) possibly_damaging(0.507) TCGA-EE-A3AB-06 2 234622071 234622071 C T UGT1A5 Missense_Mutation p.S145F 0.30 tolerated(0.05) benign(0.33) TCGA-EE-A3AB-06 2 238290040 238290040 A G COL6A3 Missense_Mutation p.I472T 0.18 probably_damaging(0.928) TCGA-EE-A3AB-06 2 238671713 238671713 G C LRRFIP1 Missense_Mutation p.D453H 0.18 tolerated(0.11) benign(0.023) TCGA-EE-A3AB-06 2 239039169 239039169 T C ESPNL Missense_Mutation p.L605P 0.23 deleterious(0) possibly_damaging(0.845) TCGA-EE-A3AB-06 2 241534534 241534534 A G CAPN10 Missense_Mutation p.N364S 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 2 242135225 242135225 G A ANO7 Missense_Mutation p.D146N 0.34 tolerated(0.37) benign(0.005) TCGA-EE-A3AB-06 2 242196123 242196123 T C HDLBP Silent p.K183K 0.17 TCGA-EE-A3AB-06 2 27596119 27596119 C T SNX17 Nonsense_Mutation p.Q88* 0.17 TCGA-EE-A3AB-06 2 27700134 27700134 A G IFT172 Silent p.N425N 0.37 TCGA-EE-A3AB-06 2 29245103 29245103 G A FAM179A Silent p.K480K 0.34 TCGA-EE-A3AB-06 2 29295010 29295010 G A C2orf71 Silent p.I706I 0.29 TCGA-EE-A3AB-06 2 30975988 30975988 C T CAPN13 Missense_Mutation p.G340R 0.34 tolerated(0.08) benign(0.118) TCGA-EE-A3AB-06 2 36943526 36943526 G C VIT Missense_Mutation p.V5L 0.12 tolerated_low_confidence(0.13) benign(0.008) TCGA-EE-A3AB-06 2 38525630 38525630 G A ATL2 Missense_Mutation p.R430C 0.34 tolerated(0.09) benign(0.02) TCGA-EE-A3AB-06 2 48873912 48873912 G A STON1-GTF2A1L Missense_Mutation p.E941K 0.35 tolerated(0.13) benign(0.015) TCGA-EE-A3AB-06 2 48915078 48915078 G A LHCGR Missense_Mutation p.P620S 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 2 56145187 56145187 C T EFEMP1 Splice_Site p.X44_splice 0.40 TCGA-EE-A3AB-06 2 61319682 61319682 G T KIAA1841 Missense_Mutation p.W391L 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AB-06 2 64778975 64778975 A G AFTPH Missense_Mutation p.T123A 0.21 tolerated(0.05) benign(0.018) TCGA-EE-A3AB-06 2 69409703 69409703 G A ANTXR1 Missense_Mutation p.E422K 0.31 deleterious(0) benign(0.297) TCGA-EE-A3AB-06 2 69565127 69565127 A G GFPT1 Missense_Mutation p.V462A 0.11 deleterious(0) possibly_damaging(0.538) TCGA-EE-A3AB-06 2 6991653 6991653 C T CMPK2 Missense_Mutation p.R385K 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 2 70933562 70933562 C T ADD2 5'UTR 0.43 TCGA-EE-A3AB-06 2 74763910 74763910 T C LOXL3 Missense_Mutation p.S280G 0.13 deleterious(0.04) benign(0.046) TCGA-EE-A3AB-06 2 88047685 88047685 G A PLGLB2 Missense_Mutation p.E5K 0.26 tolerated(1) benign(0.035) TCGA-EE-A3AB-06 2 88071721 88071721 C T RGPD2 Missense_Mutation p.E1735K 0.33 deleterious_low_confidence(0) benign(0) TCGA-EE-A3AB-06 2 96937022 96937022 T C CIAO1 Missense_Mutation p.L318P 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 2 96944664 96944664 A G SNRNP200 Missense_Mutation p.F1736L 0.20 tolerated(0.2) benign(0.029) TCGA-EE-A3AB-06 2 97030289 97030289 A G NCAPH Missense_Mutation p.N553S 0.21 deleterious(0.03) possibly_damaging(0.8) TCGA-EE-A3AB-06 2 9727571 9727571 A C YWHAQ Missense_Mutation p.I217S 0.28 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-EE-A3AB-06 3 100469405 100469405 A G ABI3BP Silent p.G1054G 0.19 TCGA-EE-A3AB-06 3 101573519 101573519 A G NFKBIZ Missense_Mutation p.N479D 0.19 tolerated(0.12) benign(0.139) TCGA-EE-A3AB-06 3 111710464 111710464 C T ABHD10 Missense_Mutation p.L273F 0.22 tolerated(0.09) probably_damaging(0.939) TCGA-EE-A3AB-06 3 121263622 121263622 A G POLQ Missense_Mutation p.C99R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 3 125822576 125822576 G A ALDH1L1 3'UTR 0.38 TCGA-EE-A3AB-06 3 126916169 126916169 C T C3orf56 Missense_Mutation p.P214L 0.47 deleterious(0.01) possibly_damaging(0.851) TCGA-EE-A3AB-06 3 127379873 127379873 C T PODXL2 Silent p.S334S 0.47 TCGA-EE-A3AB-06 3 127642829 127642829 T C KBTBD12 Missense_Mutation p.Y309H 0.34 deleterious(0.04) possibly_damaging(0.886) TCGA-EE-A3AB-06 3 127965712 127965712 T C EEFSEC Missense_Mutation p.I117T 0.13 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AB-06 3 128199875 128199875 G A GATA2 Missense_Mutation p.T477I 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3AB-06 3 129221661 129221661 A G IFT122 Missense_Mutation p.Y879C 0.40 tolerated(0.07) possibly_damaging(0.587) TCGA-EE-A3AB-06 3 129247597 129247597 T C RHO Silent p.P7P 0.22 TCGA-EE-A3AB-06 3 129695598 129695598 G A TRH Missense_Mutation p.E90K 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AB-06 3 129695631 129695631 G A TRH Missense_Mutation p.E101K 0.38 tolerated(0.06) possibly_damaging(0.543) TCGA-EE-A3AB-06 3 130095428 130095428 T C COL6A5 Missense_Mutation p.V139A 0.56 deleterious(0) possibly_damaging(0.831) TCGA-EE-A3AB-06 3 133098621 133098621 C G TMEM108 Silent p.T22T 0.12 TCGA-EE-A3AB-06 3 13371985 13371985 T C NUP210 Missense_Mutation p.N1362S 0.34 deleterious(0) probably_damaging(0.956) TCGA-EE-A3AB-06 3 138037005 138037005 G A NME9 Silent p.T62T 0.27 TCGA-EE-A3AB-06 3 138037006 138037006 G A NME9 Missense_Mutation p.T62I 0.27 deleterious(0.01) possibly_damaging(0.607) TCGA-EE-A3AB-06 3 13916496 13916496 C T WNT7A Nonsense_Mutation p.W82* 0.32 TCGA-EE-A3AB-06 3 141011642 141011642 C T ACPL2 Silent p.L346L 0.29 TCGA-EE-A3AB-06 3 141272713 141272713 A T RASA2 Missense_Mutation p.H181L 0.15 tolerated(0.4) benign(0.085) TCGA-EE-A3AB-06 3 14513721 14513721 C T SLC6A6 Silent p.L369L 0.44 TCGA-EE-A3AB-06 3 14696016 14696016 A G CCDC174 Silent p.G42G 0.14 TCGA-EE-A3AB-06 3 14744696 14744696 C T C3orf20 Missense_Mutation p.P269S 0.23 tolerated(0.88) benign(0.003) TCGA-EE-A3AB-06 3 148756980 148756980 G A HLTF Silent p.S884S 0.26 TCGA-EE-A3AB-06 3 155200402 155200402 C T PLCH1 Missense_Mutation p.R1146Q 0.27 tolerated_low_confidence(0.13) benign(0.006) TCGA-EE-A3AB-06 3 160141612 160141612 A G SMC4 Missense_Mutation p.E770G 0.12 deleterious(0.03) benign(0.038) TCGA-EE-A3AB-06 3 160803777 160803777 T C B3GALNT1 Missense_Mutation p.M256V 0.22 tolerated(0.3) benign(0.008) TCGA-EE-A3AB-06 3 167747058 167747058 T G GOLIM4 Missense_Mutation p.D489A 0.23 deleterious(0.03) probably_damaging(0.933) TCGA-EE-A3AB-06 3 169700534 169700534 A G SEC62 Silent p.V97V 0.36 TCGA-EE-A3AB-06 3 17052779 17052779 C T PLCL2 Silent p.S521S 0.26 TCGA-EE-A3AB-06 3 172080540 172080540 T C FNDC3B Silent p.P971P 0.14 TCGA-EE-A3AB-06 3 172835088 172835088 G A SPATA16 Missense_Mutation p.S145F 0.32 tolerated(0.35) possibly_damaging(0.683) TCGA-EE-A3AB-06 3 180319960 180319960 C T TTC14 5'UTR 0.29 TCGA-EE-A3AB-06 3 183961764 183961764 G A ALG3 Silent p.F249F 0.37 TCGA-EE-A3AB-06 3 184076014 184076014 G A CLCN2 Missense_Mutation p.T146I 0.28 tolerated(0.09) benign(0.168) TCGA-EE-A3AB-06 3 184076015 184076015 T A CLCN2 Missense_Mutation p.T146S 0.29 deleterious(0.04) benign(0.168) TCGA-EE-A3AB-06 3 194159595 194159595 T C ATP13A3 Missense_Mutation p.N606S 0.08 tolerated(0.91) benign(0.001) TCGA-EE-A3AB-06 3 195594769 195594769 G A TNK2 Silent p.S863S 0.19 TCGA-EE-A3AB-06 3 195935262 195935262 A G ZDHHC19 Missense_Mutation p.I193T 0.08 tolerated(0.08) benign(0.011) TCGA-EE-A3AB-06 3 196533549 196533549 A G PAK2 Missense_Mutation p.T190A 0.16 deleterious(0.03) possibly_damaging(0.609) TCGA-EE-A3AB-06 3 196663811 196663811 A G NCBP2 3'UTR 0.18 TCGA-EE-A3AB-06 3 25661495 25661495 A T TOP2B Nonsense_Mutation p.L969* 0.25 TCGA-EE-A3AB-06 3 26751350 26751350 C T LRRC3B Missense_Mutation p.P63S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 3 27490215 27490215 T C SLC4A7 Silent p.G63G 0.16 TCGA-EE-A3AB-06 3 38592724 38592724 C T SCN5A Nonsense_Mutation p.W1713* 0.30 TCGA-EE-A3AB-06 3 38662413 38662413 C T SCN5A Missense_Mutation p.A178T 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 3 38945409 38945409 C T SCN11A Missense_Mutation p.E597K 0.29 deleterious(0) possibly_damaging(0.867) TCGA-EE-A3AB-06 3 38945410 38945410 C T SCN11A Missense_Mutation p.M596I 0.28 deleterious(0.04) benign(0.073) TCGA-EE-A3AB-06 3 39108073 39108073 A G WDR48 Silent p.V101V 0.16 TCGA-EE-A3AB-06 3 40529757 40529757 T C ZNF619 3'UTR 0.21 TCGA-EE-A3AB-06 3 45779074 45779074 G A SACM1L Splice_Site p.X414_splice 0.27 TCGA-EE-A3AB-06 3 46306942 46306942 A C CCR3 Missense_Mutation p.N119T 0.36 tolerated(0.2) benign(0.012) TCGA-EE-A3AB-06 3 46784478 46784478 G A PRSS45 Silent p.S126S 0.24 TCGA-EE-A3AB-06 3 46784479 46784479 G A PRSS45 Missense_Mutation p.S126F 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3AB-06 3 48622505 48622505 G A COL7A1 Silent p.A1313A 0.21 TCGA-EE-A3AB-06 3 48629225 48629225 G A COL7A1 Missense_Mutation p.P463L 0.48 unknown(0) TCGA-EE-A3AB-06 3 48630557 48630557 A G COL7A1 Silent p.G220G 0.11 TCGA-EE-A3AB-06 3 48646675 48646675 A G UQCRC1 Missense_Mutation p.F44L 0.20 tolerated(0.27) benign(0.007) TCGA-EE-A3AB-06 3 48677499 48677499 G A CELSR3 Silent p.P3173P 0.42 TCGA-EE-A3AB-06 3 48719937 48719937 T G NCKIPSD Silent p.S110S 0.13 TCGA-EE-A3AB-06 3 49152456 49152456 T G USP19 Missense_Mutation p.D704A 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 3 49570436 49570436 A G DAG1 Missense_Mutation p.Y831C 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 3 49750144 49750144 C A RNF123 Intron 0.27 TCGA-EE-A3AB-06 3 51431421 51431421 A G RBM15B Missense_Mutation p.Q864R 0.16 deleterious(0) possibly_damaging(0.767) TCGA-EE-A3AB-06 3 52258079 52258079 G T TLR9 Missense_Mutation p.H239N 0.12 tolerated(0.67) benign(0.363) TCGA-EE-A3AB-06 3 52954617 52954617 A G SFMBT1 Silent p.D436D 0.17 TCGA-EE-A3AB-06 3 57143644 57143644 C T IL17RD Silent p.T157T 0.39 TCGA-EE-A3AB-06 3 62522183 62522183 G A CADPS Silent p.S680S 0.38 TCGA-EE-A3AB-06 3 97726706 97726706 C T GABRR3 Intron 0.32 TCGA-EE-A3AB-06 3 99513985 99513985 G A COL8A1 Missense_Mutation p.G414R 0.32 deleterious(0) unknown(0) TCGA-EE-A3AB-06 3 9990874 9990874 T C PRRT3 Missense_Mutation p.Q309R 0.27 deleterious_low_confidence(0) benign(0.296) TCGA-EE-A3AB-06 4 106156079 106156079 C T TET2 Missense_Mutation p.S327L 0.64 tolerated(0.1) benign(0.002) TCGA-EE-A3AB-06 4 110788811 110788811 C T LRIT3 Missense_Mutation p.P202S 0.45 deleterious(0.03) probably_damaging(0.918) TCGA-EE-A3AB-06 4 110788812 110788812 C T LRIT3 Missense_Mutation p.P202L 0.44 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AB-06 4 110791135 110791135 C T LRIT3 Silent p.F410F 0.29 TCGA-EE-A3AB-06 4 115997908 115997908 G A NDST4 Silent p.I95I 0.38 TCGA-EE-A3AB-06 4 123192262 123192262 C T KIAA1109 Missense_Mutation p.S2528F 0.19 possibly_damaging(0.804) TCGA-EE-A3AB-06 4 123317410 123317410 G A ADAD1 Missense_Mutation p.G201E 0.12 tolerated(0.07) benign(0.042) TCGA-EE-A3AB-06 4 123317411 123317411 G A ADAD1 Silent p.G201G 0.11 TCGA-EE-A3AB-06 4 126239528 126239528 C T FAT4 Silent p.F654F 0.38 TCGA-EE-A3AB-06 4 138449932 138449932 G A PCDH18 Nonsense_Mutation p.Q844* 0.24 TCGA-EE-A3AB-06 4 169279237 169279237 T A DDX60L 3'UTR 0.28 TCGA-EE-A3AB-06 4 174253098 174253098 T C HMGB2 3'UTR 0.13 TCGA-EE-A3AB-06 4 1818528 1818528 G A LETM1 Silent p.I619I 0.41 TCGA-EE-A3AB-06 4 187541983 187541983 G A FAT1 Silent p.T1919T 0.35 TCGA-EE-A3AB-06 4 187541984 187541984 G A FAT1 Missense_Mutation p.T1919I 0.36 benign(0.005) TCGA-EE-A3AB-06 4 25664141 25664141 T A SLC34A2 Missense_Mutation p.L7M 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.714) TCGA-EE-A3AB-06 4 39460688 39460688 G C LIAS 5'UTR 0.20 TCGA-EE-A3AB-06 4 41615515 41615515 T C LIMCH1 Silent p.S173S 0.12 TCGA-EE-A3AB-06 4 42145831 42145831 C T BEND4 Missense_Mutation p.S223N 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-EE-A3AB-06 4 48578211 48578211 T C FRYL Missense_Mutation p.T853A 0.16 tolerated(0.12) benign(0.001) TCGA-EE-A3AB-06 4 70455222 70455222 G A UGT2A1 Silent p.F650F 0.46 TCGA-EE-A3AB-06 4 75314910 75314910 T C AREG Missense_Mutation p.F153L 0.43 deleterious(0.03) possibly_damaging(0.742) TCGA-EE-A3AB-06 4 8037873 8037873 T C ABLIM2 Intron 0.31 TCGA-EE-A3AB-06 4 94137898 94137898 G A GRID2 Missense_Mutation p.D267N 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A3AB-06 4 99325641 99325641 A G RAP1GDS1 Silent p.E218E 0.11 TCGA-EE-A3AB-06 5 10402676 10402676 T C MARCH6 Missense_Mutation p.V385A 0.31 tolerated(0.08) benign(0.081) TCGA-EE-A3AB-06 5 1264604 1264604 C T TERT Missense_Mutation p.V920I 0.19 tolerated(0.41) benign(0.017) TCGA-EE-A3AB-06 5 132197533 132197533 A C GDF9 Missense_Mutation p.I371M 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 5 136969750 136969750 T C KLHL3 Missense_Mutation p.M476V 0.25 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AB-06 5 139060446 139060446 C T CXXC5 Missense_Mutation p.S113F 0.52 deleterious(0.02) benign(0.074) TCGA-EE-A3AB-06 5 139908142 139908142 C T ANKHD1 Missense_Mutation p.R1871C 0.53 probably_damaging(0.995) TCGA-EE-A3AB-06 5 140215371 140215371 A G PCDHA7 Missense_Mutation p.N468S 0.27 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-EE-A3AB-06 5 140753987 140753987 A G PCDHGA6 Missense_Mutation p.K113E 0.21 tolerated_low_confidence(0.09) benign(0.008) TCGA-EE-A3AB-06 5 140870697 140870697 A G PCDHGC5 Silent p.T630T 0.26 TCGA-EE-A3AB-06 5 14271002 14271002 C T TRIO Missense_Mutation p.L76F 0.35 benign(0.365) TCGA-EE-A3AB-06 5 153026508 153026508 G A GRIA1 Missense_Mutation p.G91R 0.39 deleterious(0.02) possibly_damaging(0.856) TCGA-EE-A3AB-06 5 156566260 156566260 A G MED7 Silent p.S61S 0.22 TCGA-EE-A3AB-06 5 164028140 164028140 G A CTC-340A15.2 RNA 0.55 TCGA-EE-A3AB-06 5 169677840 169677840 G A LCP2 Missense_Mutation p.P458L 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AB-06 5 170863160 170863160 G A FGF18 Missense_Mutation p.D45N 0.46 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 5 171327049 171327049 A G FBXW11 Silent p.S143S 0.35 TCGA-EE-A3AB-06 5 172585810 172585810 A G BNIP1 Silent p.K154K 0.22 TCGA-EE-A3AB-06 5 177688739 177688739 C T COL23A1 Missense_Mutation p.G229E 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 5 35792479 35792479 C T SPEF2 Silent p.I1495I 0.37 TCGA-EE-A3AB-06 5 35876265 35876265 G A IL7R Missense_Mutation p.D353N 0.40 tolerated(0.42) benign(0.001) TCGA-EE-A3AB-06 5 36122395 36122395 A T LMBRD2 Nonsense_Mutation p.Y369* 0.35 TCGA-EE-A3AB-06 5 38406302 38406302 G A EGFLAM Missense_Mutation p.G263R 0.15 tolerated_low_confidence(0.37) benign(0.197) TCGA-EE-A3AB-06 5 41142943 41142943 C T C6 Missense_Mutation p.G930E 0.32 deleterious(0.02) possibly_damaging(0.623) TCGA-EE-A3AB-06 5 54429240 54429240 A G CDC20B Missense_Mutation p.Y233H 0.24 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AB-06 5 5457825 5457825 C T KIAA0947 Missense_Mutation p.P358S 0.26 tolerated(0.22) benign(0.062) TCGA-EE-A3AB-06 5 5457826 5457826 C T KIAA0947 Missense_Mutation p.P358L 0.26 tolerated(1) benign(0) TCGA-EE-A3AB-06 5 64466462 64466462 G A ADAMTS6 Missense_Mutation p.P1076S 0.40 tolerated(0.1) benign(0.04) TCGA-EE-A3AB-06 5 68665339 68665339 G C TAF9 Intron 0.24 TCGA-EE-A3AB-06 5 74869588 74869588 G C POLK Missense_Mutation p.R145T 0.39 deleterious(0) possibly_damaging(0.563) TCGA-EE-A3AB-06 5 92929368 92929368 C T NR2F1 Silent p.P364P 0.47 TCGA-EE-A3AB-06 6 102372565 102372565 G T GRIK2 Missense_Mutation p.W613L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 6 109690179 109690179 G A CD164 Nonsense_Mutation p.R157* 0.27 TCGA-EE-A3AB-06 6 117121776 117121776 C T GPRC6A Missense_Mutation p.E507K 0.44 tolerated(0.18) benign(0.008) TCGA-EE-A3AB-06 6 12162052 12162052 C T HIVEP1 Missense_Mutation p.P2290S 0.33 tolerated(0.13) benign(0.002) TCGA-EE-A3AB-06 6 12162053 12162053 C T HIVEP1 Missense_Mutation p.P2290L 0.32 deleterious(0.04) benign(0.018) TCGA-EE-A3AB-06 6 125404012 125404012 T A RNF217 Missense_Mutation p.F266Y 0.60 tolerated_low_confidence(0.07) benign(0.031) TCGA-EE-A3AB-06 6 133072294 133072294 T C VNN2 Missense_Mutation p.E397G 0.07 deleterious(0.01) benign(0.41) TCGA-EE-A3AB-06 6 13616734 13616734 A G NOL7 Missense_Mutation p.T123A 0.11 tolerated(0.47) benign(0.007) TCGA-EE-A3AB-06 6 137322981 137322981 G A IL20RA Missense_Mutation p.P459L 0.38 tolerated(0.31) benign(0.002) TCGA-EE-A3AB-06 6 143093438 143093438 G A HIVEP2 Missense_Mutation p.S813L 0.42 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AB-06 6 150290481 150290481 A T ULBP1 Missense_Mutation p.M204L 0.46 tolerated(0.12) benign(0.101) TCGA-EE-A3AB-06 6 150719389 150719389 G A IYD 3'UTR 0.38 TCGA-EE-A3AB-06 6 152553293 152553293 G A SYNE1 Silent p.S6940S 0.36 TCGA-EE-A3AB-06 6 152553294 152553294 G A SYNE1 Missense_Mutation p.S6940F 0.34 benign(0.004) TCGA-EE-A3AB-06 6 157405953 157405954 - G ARID1B Frame_Shift_Ins p.S736Ifs*27 0.35 TCGA-EE-A3AB-06 6 159618512 159618512 G A FNDC1 Missense_Mutation p.M53I 0.52 deleterious(0.02) unknown(0) TCGA-EE-A3AB-06 6 159650965 159650965 C T FNDC1 Silent p.F433F 0.55 TCGA-EE-A3AB-06 6 166836860 166836860 C T RPS6KA2 Missense_Mutation p.E551K 0.42 tolerated(0.08) benign(0.015) TCGA-EE-A3AB-06 6 166944751 166944751 G A RPS6KA2 Silent p.A97A 0.56 TCGA-EE-A3AB-06 6 168467510 168467510 C T FRMD1 Missense_Mutation p.G129E 0.38 tolerated(0.06) benign(0.119) TCGA-EE-A3AB-06 6 17773793 17773793 C T KIF13A Missense_Mutation p.D1414N 0.28 deleterious(0.03) possibly_damaging(0.517) TCGA-EE-A3AB-06 6 21000535 21000535 A G CDKAL1 Silent p.V329V 0.16 TCGA-EE-A3AB-06 6 30571908 30571908 A G PPP1R10 Missense_Mutation p.V462A 0.12 tolerated(0.59) benign(0.117) TCGA-EE-A3AB-06 6 30656531 30656531 G C NRM Missense_Mutation p.H232Q 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AB-06 6 31431776 31431776 C T HCP5 RNA 0.32 TCGA-EE-A3AB-06 6 31604046 31604046 A G PRRC2A Silent p.L1895L 0.14 TCGA-EE-A3AB-06 6 32030067 32030067 C T TNXB Silent p.K2345K 0.32 TCGA-EE-A3AB-06 6 32049968 32049968 C T RNA5SP206 5'Flank 0.38 TCGA-EE-A3AB-06 6 33368163 33368163 C T KIFC1 Intron 0.20 TCGA-EE-A3AB-06 6 33423954 33423954 A G ZBTB9 Silent p.G359G 0.13 TCGA-EE-A3AB-06 6 36020474 36020474 A G MAPK14 Splice_Site p.X39_splice 0.21 TCGA-EE-A3AB-06 6 36270088 36270088 G A PNPLA1 Missense_Mutation p.G409E 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.86) TCGA-EE-A3AB-06 6 36823785 36823785 T C PPIL1 Missense_Mutation p.N102S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 6 37141788 37141788 C T PIM1 Missense_Mutation p.P288L 0.30 deleterious(0) possibly_damaging(0.876) TCGA-EE-A3AB-06 6 39033977 39033977 C T GLP1R Missense_Mutation p.S136F 0.15 deleterious(0.04) benign(0.003) TCGA-EE-A3AB-06 6 43171673 43171673 G A CUL9 Silent p.K1369K 0.32 TCGA-EE-A3AB-06 6 44255286 44255286 T C TCTE1 Missense_Mutation p.K93E 0.12 tolerated(0.91) benign(0.001) TCGA-EE-A3AB-06 6 44374129 44374129 A G CDC5L Silent p.P276P 0.15 TCGA-EE-A3AB-06 6 46830682 46830682 C T GPR116 Silent p.E714E 0.31 TCGA-EE-A3AB-06 6 56510976 56510976 A G DST 5'Flank 0.27 TCGA-EE-A3AB-06 6 56993563 56993563 G A ZNF451 Missense_Mutation p.E117K 0.25 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AB-06 6 62687981 62687981 A C KHDRBS2 Missense_Mutation p.F158C 0.21 deleterious(0) probably_damaging(0.921) TCGA-EE-A3AB-06 6 7231322 7231322 C T RREB1 Missense_Mutation p.P997L 0.34 tolerated(0.37) benign(0.001) TCGA-EE-A3AB-06 6 73904344 73904344 C T KCNQ5 Missense_Mutation p.S688F 0.33 deleterious(0.02) possibly_damaging(0.655) TCGA-EE-A3AB-06 6 74063664 74063664 G A DPPA5 Silent p.V68V 0.32 TCGA-EE-A3AB-06 6 75861946 75861946 C T COL12A1 Missense_Mutation p.D1246N 0.27 probably_damaging(0.999) TCGA-EE-A3AB-06 6 83885738 83885738 G A PGM3 Silent p.H385H 0.31 TCGA-EE-A3AB-06 6 90411652 90411652 G A MDN1 Silent p.I2759I 0.36 TCGA-EE-A3AB-06 7 100839159 100839159 G A MOGAT3 3'UTR 0.44 TCGA-EE-A3AB-06 7 103270546 103270546 G A RELN Missense_Mutation p.S848F 0.26 deleterious(0) possibly_damaging(0.828) TCGA-EE-A3AB-06 7 116918401 116918401 A C WNT2 Silent p.T297T 0.45 TCGA-EE-A3AB-06 7 1197309 1197309 G A ZFAND2A Missense_Mutation p.P45S 0.24 tolerated(0.42) benign(0.441) TCGA-EE-A3AB-06 7 127240445 127240445 G A FSCN3 Missense_Mutation p.E497K 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 7 128116812 128116812 C T METTL2B 5'UTR 0.14 TCGA-EE-A3AB-06 7 128116813 128116813 C T METTL2B 5'UTR 0.15 TCGA-EE-A3AB-06 7 128494182 128494182 C T FLNC Silent p.V2213V 0.55 TCGA-EE-A3AB-06 7 130002796 130002796 C T CPA5 Silent p.L236L 0.08 TCGA-EE-A3AB-06 7 131195932 131195932 C T PODXL Missense_Mutation p.E121K 0.62 tolerated(0.57) benign(0) TCGA-EE-A3AB-06 7 132192849 132192849 G A PLXNA4 Missense_Mutation p.R202W 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 7 132192851 132192851 C G PLXNA4 Missense_Mutation p.S201T 0.07 tolerated(0.07) probably_damaging(0.993) TCGA-EE-A3AB-06 7 132192852 132192852 T C PLXNA4 Missense_Mutation p.S201G 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AB-06 7 132192910 132192910 G A PLXNA4 Silent p.D181D 0.12 TCGA-EE-A3AB-06 7 140219486 140219486 C T DENND2A Missense_Mutation p.E982K 0.13 deleterious(0) benign(0.283) TCGA-EE-A3AB-06 7 140379030 140379030 C T ADCK2 Missense_Mutation p.P386S 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 7 140379031 140379031 C T ADCK2 Missense_Mutation p.P386L 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.65 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AB-06 7 141536153 141536153 T C PRSS37 3'UTR 0.08 TCGA-EE-A3AB-06 7 142104269 142104269 G A TRBV6-9 Missense_Mutation p.H66Y 0.16 tolerated(0.75) benign(0.007) TCGA-EE-A3AB-06 7 142149034 142149034 G A TRBV5-5 Silent p.F79F 0.14 TCGA-EE-A3AB-06 7 142223895 142223895 C T TRBV11-1 Missense_Mutation p.G91E 0.09 tolerated(0.12) possibly_damaging(0.501) TCGA-EE-A3AB-06 7 142458472 142458472 C T PRSS1 Missense_Mutation p.P36L 0.10 deleterious(0.03) possibly_damaging(0.892) TCGA-EE-A3AB-06 7 142458473 142458473 C T PRSS1 Silent p.P36P 0.10 TCGA-EE-A3AB-06 7 142562173 142562173 C G EPHB6 Silent p.T205T 0.08 TCGA-EE-A3AB-06 7 142637463 142637463 A C C7orf34 Missense_Mutation p.E78A 0.05 deleterious(0) possibly_damaging(0.801) TCGA-EE-A3AB-06 7 144098194 144098194 C A NOBOX Silent p.G263G 0.11 TCGA-EE-A3AB-06 7 144101698 144101698 G A NOBOX Missense_Mutation p.S54F 0.19 deleterious_low_confidence(0) benign(0.354) TCGA-EE-A3AB-06 7 149500562 149500562 G A SSPO Splice_Site 0.50 TCGA-EE-A3AB-06 7 150706067 150706067 G A NOS3 Missense_Mutation p.R721Q 0.18 tolerated(0.61) benign(0.001) TCGA-EE-A3AB-06 7 150752153 150752153 G A CDK5 Missense_Mutation p.P204L 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A3AB-06 7 150845860 150845860 A G GBX1 Missense_Mutation p.V303A 0.12 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AB-06 7 150921023 150921023 T C ABCF2 Missense_Mutation p.E182G 0.10 tolerated(0.07) benign(0.029) TCGA-EE-A3AB-06 7 150932236 150932236 T C CHPF2 Silent p.R122R 0.10 TCGA-EE-A3AB-06 7 150937310 150937310 T C SMARCD3 Missense_Mutation p.K354R 0.11 tolerated(0.2) benign(0.235) TCGA-EE-A3AB-06 7 151851483 151851483 G A KMT2C Missense_Mutation p.P4003L 0.44 probably_damaging(0.999) TCGA-EE-A3AB-06 7 151851484 151851484 G A KMT2C Missense_Mutation p.P4003S 0.44 probably_damaging(0.999) TCGA-EE-A3AB-06 7 157159236 157159236 A G DNAJB6 Silent p.G72G 0.06 TCGA-EE-A3AB-06 7 158528224 158528224 G A ESYT2 Silent p.F852F 0.53 TCGA-EE-A3AB-06 7 158560404 158560404 T C ESYT2 Missense_Mutation p.I337V 0.07 tolerated(0.54) benign(0.017) TCGA-EE-A3AB-06 7 27148097 27148097 T C HOXA3 Missense_Mutation p.T257A 0.10 tolerated(0.13) benign(0.027) TCGA-EE-A3AB-06 7 30898925 30898925 C T FAM188B Missense_Mutation p.S577F 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 7 34192847 34192847 G A BMPER Missense_Mutation p.G674R 0.35 deleterious(0.03) benign(0.14) TCGA-EE-A3AB-06 7 34884511 34884511 G A NPSR1 Missense_Mutation p.G254E 0.24 tolerated(0.35) possibly_damaging(0.597) TCGA-EE-A3AB-06 7 36450166 36450166 T C ANLN Silent p.R380R 0.17 TCGA-EE-A3AB-06 7 37907318 37907318 G T NME8 Missense_Mutation p.E212D 0.09 tolerated(1) benign(0.028) TCGA-EE-A3AB-06 7 45222948 45222948 T C RAMP3 Silent p.V128V 0.16 TCGA-EE-A3AB-06 7 45717529 45717529 T C ADCY1 Missense_Mutation p.V556A 0.14 tolerated(0.92) benign(0.001) TCGA-EE-A3AB-06 7 55224486 55224486 C A EGFR Missense_Mutation p.Q390K 0.15 tolerated(0.29) benign(0) TCGA-EE-A3AB-06 7 62753192 62753192 G A ZNF733P RNA 0.65 TCGA-EE-A3AB-06 7 6426848 6426848 T A RAC1 Missense_Mutation p.V14E 0.14 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AB-06 7 72957930 72957930 A C BCL7B Missense_Mutation p.N71K 0.05 tolerated(0.94) benign(0.012) TCGA-EE-A3AB-06 7 73150807 73150807 T C ABHD11 3'UTR 0.17 TCGA-EE-A3AB-06 7 77261684 77261684 T C PTPN12 Silent p.D672D 0.08 TCGA-EE-A3AB-06 7 77558603 77558603 C T PHTF2 Missense_Mutation p.P399S 0.14 tolerated(0.44) benign(0.008) TCGA-EE-A3AB-06 7 80427407 80427407 C G SEMA3C Splice_Site p.X377_splice 0.11 TCGA-EE-A3AB-06 7 83590917 83590917 T C SEMA3A Missense_Mutation p.T696A 0.16 tolerated(0.64) benign(0.004) TCGA-EE-A3AB-06 7 90895933 90895933 C T FZD1 Missense_Mutation p.P580S 0.20 tolerated(0.07) benign(0.088) TCGA-EE-A3AB-06 7 92085877 92085877 T C GATAD1 3'UTR 0.09 TCGA-EE-A3AB-06 7 92733845 92733845 C T SAMD9 Silent p.R522R 0.64 TCGA-EE-A3AB-06 7 92826820 92826820 C T HEPACAM2 Nonsense_Mutation p.W372* 0.14 TCGA-EE-A3AB-06 7 94057679 94057679 G A COL1A2 Missense_Mutation p.E1201K 0.22 unknown(0) TCGA-EE-A3AB-06 7 98529167 98529167 A G TRRAP Missense_Mutation p.D1244G 0.18 benign(0.017) TCGA-EE-A3AB-06 7 99361548 99361548 T C CYP3A4 Missense_Mutation p.Y319C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 8 100588007 100588007 A G VPS13B Missense_Mutation p.T1716A 0.09 tolerated(0.72) benign(0.006) TCGA-EE-A3AB-06 8 110498990 110498990 G A PKHD1L1 Missense_Mutation p.D3274N 0.48 deleterious(0) benign(0.021) TCGA-EE-A3AB-06 8 120807857 120807857 A G TAF2 Missense_Mutation p.V369A 0.09 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A3AB-06 8 124357152 124357152 T C ATAD2 Missense_Mutation p.D897G 0.19 deleterious(0.01) benign(0.064) TCGA-EE-A3AB-06 8 124797899 124797899 T C FAM91A1 Missense_Mutation p.F294L 0.11 deleterious(0.05) possibly_damaging(0.723) TCGA-EE-A3AB-06 8 125115442 125115442 C T FER1L6 Silent p.A1727A 0.25 TCGA-EE-A3AB-06 8 133900485 133900485 A G TG Silent p.E811E 0.16 TCGA-EE-A3AB-06 8 139263133 139263133 A G FAM135B Missense_Mutation p.S165P 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 8 139703075 139703075 G A COL22A1 Missense_Mutation p.P933S 0.24 unknown(0) TCGA-EE-A3AB-06 8 143782022 143782022 G A LY6K Missense_Mutation p.R26Q 0.45 tolerated(0.49) benign(0.003) TCGA-EE-A3AB-06 8 144681413 144681413 A G TIGD5 Missense_Mutation p.D447G 0.16 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AB-06 8 144681449 144681449 A G EEF1D 5'Flank 0.15 TCGA-EE-A3AB-06 8 144695448 144695448 C T TSTA3 Silent p.S276S 0.15 TCGA-EE-A3AB-06 8 144810185 144810185 A G FAM83H Silent p.G482G 0.12 TCGA-EE-A3AB-06 8 144877243 144877243 G C SCRIB Missense_Mutation p.L1271V 0.17 probably_damaging(0.995) TCGA-EE-A3AB-06 8 144895650 144895650 A G SCRIB Missense_Mutation p.S165P 0.09 probably_damaging(0.999) TCGA-EE-A3AB-06 8 144947161 144947161 G A EPPK1 Silent p.L87L 0.42 TCGA-EE-A3AB-06 8 144991141 144991141 A G PLEC Missense_Mutation p.I4420T 0.11 probably_damaging(0.999) TCGA-EE-A3AB-06 8 145007491 145007491 A G PLEC Missense_Mutation p.V568A 0.15 unknown(0) TCGA-EE-A3AB-06 8 145008819 145008819 A G PLEC Missense_Mutation p.I479T 0.10 unknown(0) TCGA-EE-A3AB-06 8 145731495 145731495 T C GPT Missense_Mutation p.S313P 0.08 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AB-06 8 145749671 145749671 A G LRRC14 3'UTR 0.16 TCGA-EE-A3AB-06 8 145999711 145999711 G A ZNF34 Missense_Mutation p.S208L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AB-06 8 21959688 21959688 A G FAM160B2 Silent p.P618P 0.18 TCGA-EE-A3AB-06 8 23069647 23069647 C T TNFRSF10A Missense_Mutation p.G129R 0.42 tolerated(0.7) benign(0.007) TCGA-EE-A3AB-06 8 37730341 37730341 G A RAB11FIP1 Missense_Mutation p.S660F 0.62 deleterious(0.01) benign(0.192) TCGA-EE-A3AB-06 8 38133817 38133817 A G WHSC1L1 Missense_Mutation p.Y1357H 0.38 tolerated(0.08) benign(0.005) TCGA-EE-A3AB-06 8 38808377 38808377 G A PLEKHA2 Missense_Mutation p.G119S 0.28 tolerated(1) benign(0.002) TCGA-EE-A3AB-06 8 48802901 48802901 A G PRKDC Missense_Mutation p.Y1329H 0.12 probably_damaging(1) TCGA-EE-A3AB-06 8 55534779 55534779 C T RP1 Missense_Mutation p.P240S 0.47 tolerated(0.09) benign(0.125) TCGA-EE-A3AB-06 8 59511825 59511825 T C NSMAF Silent p.K548K 0.11 TCGA-EE-A3AB-06 8 6479203 6479203 T C MCPH1 Missense_Mutation p.W815R 0.43 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AB-06 8 69033271 69033271 G A PREX2 Silent p.R1237R 0.50 TCGA-EE-A3AB-06 8 70970971 70970971 C T PRDM14 Silent p.R430R 0.28 TCGA-EE-A3AB-06 8 95182670 95182670 G C CDH17 Missense_Mutation p.P341A 0.11 tolerated(0.52) benign(0.008) TCGA-EE-A3AB-06 8 95182692 95182692 A T CDH17 Silent p.I333I 0.10 TCGA-EE-A3AB-06 9 107298603 107298603 G A OR13C3 Silent p.I164I 0.40 TCGA-EE-A3AB-06 9 108457007 108457007 C T TMEM38B Silent p.D22D 0.18 TCGA-EE-A3AB-06 9 111798547 111798547 A G TMEM245 Silent p.L780L 0.32 TCGA-EE-A3AB-06 9 115652281 115652281 T C SLC46A2 Silent p.L227L 0.31 TCGA-EE-A3AB-06 9 119106930 119106930 G A PAPPA Silent p.V1240V 0.52 TCGA-EE-A3AB-06 9 125282298 125282298 G A OR1J4 Silent p.R293R 0.54 TCGA-EE-A3AB-06 9 125748640 125748640 T A RABGAP1 Missense_Mutation p.C178S 0.51 tolerated(1) benign(0.025) TCGA-EE-A3AB-06 9 130270409 130270409 G A FAM129B Missense_Mutation p.P502L 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AB-06 9 131482253 131482253 A G PKN3 Missense_Mutation p.Y778C 0.18 deleterious(0.03) benign(0.048) TCGA-EE-A3AB-06 9 131598135 131598135 G A CCBL1 Silent p.L260L 0.21 TCGA-EE-A3AB-06 9 131598136 131598136 G A CCBL1 Silent p.V259V 0.21 TCGA-EE-A3AB-06 9 132401685 132401685 T C ASB6 Missense_Mutation p.D133G 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A3AB-06 9 132632009 132632009 A G USP20 Missense_Mutation p.D484G 0.14 tolerated(0.07) probably_damaging(1) TCGA-EE-A3AB-06 9 135158730 135158730 C G SETX Missense_Mutation p.S2156T 0.24 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A3AB-06 9 135864497 135864497 G A GFI1B Missense_Mutation p.S187N 0.13 tolerated(0.05) possibly_damaging(0.627) TCGA-EE-A3AB-06 9 136654406 136654406 G A VAV2 Silent p.S416S 0.26 TCGA-EE-A3AB-06 9 137693830 137693830 C T COL5A1 Missense_Mutation p.P995S 0.20 unknown(0) TCGA-EE-A3AB-06 9 138903558 138903558 T C NACC2 Missense_Mutation p.N523S 0.20 tolerated_low_confidence(0.51) benign(0.002) TCGA-EE-A3AB-06 9 139301687 139301687 A G SDCCAG3 Silent p.S243S 0.17 TCGA-EE-A3AB-06 9 139305119 139305119 A G PMPCA 5'UTR 0.10 TCGA-EE-A3AB-06 9 139751991 139751991 A G MAMDC4 Missense_Mutation p.H760R 0.10 tolerated(0.56) benign(0.122) TCGA-EE-A3AB-06 9 140356702 140356702 A G PNPLA7 Missense_Mutation p.Y1192H 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AB-06 9 140638373 140638373 C T EHMT1 Missense_Mutation p.A334V 0.40 tolerated_low_confidence(0.18) benign(0.064) TCGA-EE-A3AB-06 9 33971691 33971691 C T UBAP2 Missense_Mutation p.V213I 0.12 tolerated(0.13) benign(0.057) TCGA-EE-A3AB-06 9 34379691 34379691 A G C9orf24 Missense_Mutation p.C248R 0.12 tolerated(0.34) benign(0.018) TCGA-EE-A3AB-06 9 34622434 34622434 C T ARID3C Missense_Mutation p.E320K 0.80 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A3AB-06 9 35403756 35403756 A G UNC13B Missense_Mutation p.N1501S 0.28 tolerated(0.13) benign(0.06) TCGA-EE-A3AB-06 9 35738893 35738893 T C GBA2 Silent p.E601E 0.14 TCGA-EE-A3AB-06 9 36083436 36083436 G C RECK Missense_Mutation p.D172H 0.10 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A3AB-06 9 74312988 74312988 T C TMEM2 Silent p.A1170A 0.31 TCGA-EE-A3AB-06 9 78808219 78808219 G A PCSK5 Intron 0.44 TCGA-EE-A3AB-06 9 84268944 84268944 A T TLE1 Missense_Mutation p.I81N 0.18 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AB-06 9 86256506 86256506 G A IDNK Missense_Mutation p.R71K 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3AB-06 9 86256507 86256507 G A IDNK Splice_Site p.X71_splice 0.27 TCGA-EE-A3AB-06 9 90322084 90322084 C T DAPK1 Silent p.T1366T 0.44 TCGA-EE-A3AB-06 9 90584717 90584717 G A CDK20 Silent p.V227V 0.21 TCGA-EE-A3AB-06 9 91616904 91616904 C T S1PR3 Silent p.F263F 0.30 TCGA-EE-A3AB-06 9 91690088 91690088 C T SHC3 Missense_Mutation p.G222E 0.27 deleterious(0) probably_damaging(0.952) TCGA-EE-A3AB-06 9 93637033 93637033 G A SYK Silent p.K361K 0.38 TCGA-EE-A3AB-06 9 93637034 93637034 G A SYK Missense_Mutation p.E362K 0.39 tolerated(1) benign(0.15) TCGA-EE-A3AB-06 9 95609334 95609334 G A ZNF484 Missense_Mutation p.P581S 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A3AB-06 X 101615510 101615510 G A NXF2B 3'UTR 0.30 TCGA-EE-A3AB-06 X 123200074 123200074 T G STAG2 Missense_Mutation p.L716V 0.25 tolerated(0.1) benign(0.053) TCGA-EE-A3AB-06 X 128963076 128963076 A G ZDHHC9 Missense_Mutation p.V70A 0.27 tolerated(0.31) benign(0.235) TCGA-EE-A3AB-06 X 134494127 134494127 T A ZNF449 Missense_Mutation p.I228N 0.22 deleterious(0.04) benign(0.121) TCGA-EE-A3AB-06 X 135586611 135586611 A G HTATSF1 Missense_Mutation p.M275V 0.65 tolerated(0.25) benign(0.001) TCGA-EE-A3AB-06 X 147022103 147022103 A G FMR1 Silent p.V399V 0.30 TCGA-EE-A3AB-06 X 14748379 14748379 G A GLRA2 Missense_Mutation p.M377I 0.65 tolerated(0.42) benign(0.001) TCGA-EE-A3AB-06 X 14871185 14871185 A G FANCB Silent p.D434D 0.08 TCGA-EE-A3AB-06 X 153055231 153055231 A G IDH3G Silent p.N94N 0.23 TCGA-EE-A3AB-06 X 155003646 155003646 C T SPRY3 Missense_Mutation p.A38V 0.50 tolerated(0.23) benign(0.009) TCGA-EE-A3AB-06 X 155003647 155003647 C T SPRY3 Silent p.A38A 0.51 TCGA-EE-A3AB-06 X 18954222 18954222 T C PHKA2 Missense_Mutation p.K363R 0.22 tolerated(0.06) benign(0.063) TCGA-EE-A3AB-06 X 26213011 26213011 A T MAGEB6 Missense_Mutation p.S350C 0.36 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3AB-06 X 27766203 27766203 G A DCAF8L2 Silent p.R397R 0.75 TCGA-EE-A3AB-06 X 3241577 3241577 G A MXRA5 Missense_Mutation p.P717S 0.69 tolerated(0.46) benign(0.194) TCGA-EE-A3AB-06 X 34962049 34962049 G A FAM47B Silent p.Q367Q 0.64 TCGA-EE-A3AB-06 X 34962050 34962050 G A FAM47B Missense_Mutation p.E368K 0.59 tolerated(0.53) benign(0.382) TCGA-EE-A3AB-06 X 43817929 43817929 G A NDP 5'UTR 0.67 TCGA-EE-A3AB-06 X 44703829 44703829 G A DUSP21 Missense_Mutation p.E151K 0.51 tolerated(0.53) benign(0.02) TCGA-EE-A3AB-06 X 48163708 48163708 G A SSX9 RNA 0.69 TCGA-EE-A3AB-06 X 65409642 65409642 C T HEPH Missense_Mutation p.H363Y 0.68 tolerated(0.18) benign(0.014) TCGA-EE-A3AB-06 X 71424980 71424980 A G ERCC6L Missense_Mutation p.C1213R 0.22 tolerated(0.52) benign(0.003) TCGA-EE-A3AB-06 Y 4925127 4925127 C T PCDH11Y Missense_Mutation p.S88F 0.59 deleterious(0.01) possibly_damaging(0.891) TCGA-EE-A3AC-06 10 101643875 101643875 T C DNMBP Missense_Mutation p.N1297S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 10 105005966 105005966 G A RPEL1 Missense_Mutation p.M71I 0.45 deleterious(0.02) benign(0.135) TCGA-EE-A3AC-06 10 106153090 106153090 G A CCDC147 Missense_Mutation p.E511K 0.34 deleterious(0) possibly_damaging(0.728) TCGA-EE-A3AC-06 10 106153215 106153215 G A CCDC147 Silent p.K552K 0.43 TCGA-EE-A3AC-06 10 106974284 106974284 C T SORCS3 Silent p.A820A 0.30 TCGA-EE-A3AC-06 10 113916899 113916899 G A GPAM Intron 0.43 TCGA-EE-A3AC-06 10 115334134 115334134 C T HABP2 Missense_Mutation p.P65S 0.35 tolerated(0.09) benign(0.279) TCGA-EE-A3AC-06 10 115661517 115661517 A G NHLRC2 Missense_Mutation p.Q411R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 10 118969168 118969168 C T KCNK18 Silent p.F171F 0.35 TCGA-EE-A3AC-06 10 119044446 119044446 G A PDZD8 Missense_Mutation p.P600S 0.40 tolerated(0.57) benign(0.034) TCGA-EE-A3AC-06 10 124711494 124711494 G A C10orf88 Silent p.S139S 0.34 TCGA-EE-A3AC-06 10 124896586 124896586 C T HMX3 Missense_Mutation p.A138V 0.67 tolerated(0.66) benign(0.024) TCGA-EE-A3AC-06 10 124896587 124896587 C T HMX3 Silent p.A138A 0.58 TCGA-EE-A3AC-06 10 12940443 12940443 G A CCDC3 Silent p.P262P 0.48 TCGA-EE-A3AC-06 10 129846043 129846043 G A PTPRE Silent p.R75R 0.38 TCGA-EE-A3AC-06 10 18280159 18280159 G A SLC39A12 Missense_Mutation p.G450E 0.42 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AC-06 10 18629818 18629818 C T CACNB2 Intron 0.36 TCGA-EE-A3AC-06 10 20453417 20453417 G A PLXDC2 Silent p.Q268Q 0.33 TCGA-EE-A3AC-06 10 22048376 22048376 G A DNAJC1 Missense_Mutation p.A440V 0.38 tolerated(0.32) benign(0.001) TCGA-EE-A3AC-06 10 24762301 24762301 C T KIAA1217 Missense_Mutation p.P331S 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A3AC-06 10 29600086 29600086 C T LYZL1 3'UTR 0.46 TCGA-EE-A3AC-06 10 29815923 29815923 G A SVIL Missense_Mutation p.P770L 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3AC-06 10 29839933 29839933 C T SVIL Silent p.R140R 0.30 TCGA-EE-A3AC-06 10 30336558 30336558 C T KIAA1462 Missense_Mutation p.G62R 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3AC-06 10 46967612 46967612 C T SYT15 Silent p.V155V 0.18 TCGA-EE-A3AC-06 10 46968620 46968620 C T SYT15 Missense_Mutation p.A106T 0.24 tolerated(0.51) benign(0.02) TCGA-EE-A3AC-06 10 47087528 47087528 C T NPY4R Missense_Mutation p.H249Y 0.18 deleterious(0.02) benign(0.047) TCGA-EE-A3AC-06 10 48389177 48389177 C T RBP3 Silent p.E567E 0.35 TCGA-EE-A3AC-06 10 48416538 48416538 G C GDF2 Silent p.T52T 0.44 TCGA-EE-A3AC-06 10 50315776 50315776 C T VSTM4 Missense_Mutation p.G107E 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 10 50599893 50599893 G A DRGX Silent p.S5S 0.31 TCGA-EE-A3AC-06 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 10 54531404 54531404 C T MBL2 5'UTR 0.47 TCGA-EE-A3AC-06 10 5567221 5567221 G A CALML3 Missense_Mutation p.R58Q 0.42 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A3AC-06 10 5789846 5789846 G A FAM208B Missense_Mutation p.G1488R 0.47 tolerated(0.2) benign(0.132) TCGA-EE-A3AC-06 10 5789847 5789847 G A FAM208B Missense_Mutation p.G1488E 0.45 tolerated(0.45) benign(0.036) TCGA-EE-A3AC-06 10 64974730 64974730 A T JMJD1C Missense_Mutation p.N399K 0.38 deleterious(0.01) benign(0.017) TCGA-EE-A3AC-06 10 68687037 68687037 C T LRRTM3 Silent p.I121I 0.38 TCGA-EE-A3AC-06 10 69918341 69918341 G A MYPN Silent p.G472G 0.38 TCGA-EE-A3AC-06 10 70153803 70153803 A G RUFY2 Intron 0.50 TCGA-EE-A3AC-06 10 70998811 70998811 C T HKDC1 Missense_Mutation p.S170L 0.28 deleterious(0.01) possibly_damaging(0.596) TCGA-EE-A3AC-06 10 73551085 73551085 C T CDH23 5'Flank 0.73 TCGA-EE-A3AC-06 10 75035313 75035313 C T TTC18 Missense_Mutation p.G925E 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A3AC-06 10 75082781 75082781 C T TTC18 Silent p.V354V 0.35 TCGA-EE-A3AC-06 10 75434586 75434586 G A AGAP5 Missense_Mutation p.S611F 0.50 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AC-06 10 75530142 75530142 C T SEC24C Silent p.L989L 0.35 TCGA-EE-A3AC-06 10 78944602 78944602 G A KCNMA1 Silent p.F225F 0.39 TCGA-EE-A3AC-06 10 79581859 79581859 C T DLG5 Missense_Mutation p.V795I 0.37 tolerated(0.55) possibly_damaging(0.868) TCGA-EE-A3AC-06 10 82098294 82098294 C T DYDC1 Missense_Mutation p.E145K 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 10 82331326 82331326 G A SH2D4B Missense_Mutation p.E163K 0.44 tolerated(0.23) benign(0.202) TCGA-EE-A3AC-06 10 88769041 88769041 G A RP11-96C23.10 3'Flank 0.31 TCGA-EE-A3AC-06 10 91066303 91066303 C T IFIT2 Missense_Mutation p.P197L 0.36 tolerated(0.48) benign(0.01) TCGA-EE-A3AC-06 10 91144031 91144031 T C IFIT1B Silent p.L321L 0.41 TCGA-EE-A3AC-06 10 91469688 91469688 T C KIF20B Missense_Mutation p.F119S 0.35 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AC-06 10 92502157 92502157 C T HTR7 3'UTR 0.29 TCGA-EE-A3AC-06 10 95360193 95360193 G A RBP4 Silent p.F104F 0.32 TCGA-EE-A3AC-06 10 95791423 95791423 A G PLCE1 Missense_Mutation p.N207S 0.41 tolerated_low_confidence(0.31) benign(0.003) TCGA-EE-A3AC-06 10 95791424 95791424 C T PLCE1 Silent p.N207N 0.41 TCGA-EE-A3AC-06 10 98092170 98092170 G A DNTT Silent p.R392R 0.35 TCGA-EE-A3AC-06 11 101937378 101937378 G A C11orf70 Missense_Mutation p.R144Q 0.32 deleterious(0) probably_damaging(0.949) TCGA-EE-A3AC-06 11 105850336 105850336 G A GRIA4 Missense_Mutation p.R860K 0.40 tolerated(0.16) possibly_damaging(0.595) TCGA-EE-A3AC-06 11 106810351 106810351 C T GUCY1A2 Silent p.R347R 0.40 TCGA-EE-A3AC-06 11 10772987 10772987 C T CTR9 Missense_Mutation p.L10F 0.31 deleterious(0) probably_damaging(0.954) TCGA-EE-A3AC-06 11 10823151 10823151 G A EIF4G2 Intron 0.49 TCGA-EE-A3AC-06 11 108409798 108409798 C T EXPH5 Silent p.R132R 0.34 TCGA-EE-A3AC-06 11 108549097 108549097 C T DDX10 Missense_Mutation p.P198L 0.32 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AC-06 11 108712144 108712144 C T DDX10 Nonsense_Mutation p.Q730* 0.33 TCGA-EE-A3AC-06 11 1096475 1096475 C T MUC2 Missense_Mutation p.P2167L 0.37 unknown(0) TCGA-EE-A3AC-06 11 113661217 113661217 G A ATF4P4 RNA 0.38 TCGA-EE-A3AC-06 11 117965569 117965569 C T TMPRSS4 Silent p.L14L 0.17 TCGA-EE-A3AC-06 11 118211228 118211228 C T CD3D Missense_Mutation p.G46R 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AC-06 11 118250261 118250261 C T UBE4A Missense_Mutation p.R565C 0.48 deleterious(0.01) possibly_damaging(0.899) TCGA-EE-A3AC-06 11 118374107 118374107 C T KMT2A Silent p.V2500V 0.34 TCGA-EE-A3AC-06 11 118881945 118881945 C T CCDC84 Silent p.I155I 0.21 TCGA-EE-A3AC-06 11 118881946 118881946 C T CCDC84 Missense_Mutation p.R156C 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 11 121367676 121367676 C T SORL1 Missense_Mutation p.S286F 0.43 deleterious(0) possibly_damaging(0.868) TCGA-EE-A3AC-06 11 121367677 121367677 C T SORL1 Silent p.S286S 0.45 TCGA-EE-A3AC-06 11 123756080 123756080 G A TMEM225 Missense_Mutation p.S18F 0.73 deleterious(0) probably_damaging(0.951) TCGA-EE-A3AC-06 11 123847819 123847819 C T OR10S1 Missense_Mutation p.D194N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AC-06 11 124189444 124189444 G A OR8D2 Missense_Mutation p.S217F 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 11 124252431 124252431 C T OR8B2 Missense_Mutation p.G270E 0.21 tolerated_low_confidence(0.08) benign(0.132) TCGA-EE-A3AC-06 11 124294185 124294185 C T OR8B4 Missense_Mutation p.E195K 0.41 tolerated_low_confidence(0.05) benign(0.007) TCGA-EE-A3AC-06 11 124617497 124617497 G A VSIG2 Silent p.F306F 0.33 TCGA-EE-A3AC-06 11 124749733 124749733 C T ROBO3 Silent p.L1283L 0.23 TCGA-EE-A3AC-06 11 125359237 125359237 C T FEZ1 Intron 0.42 TCGA-EE-A3AC-06 11 125446179 125446179 C T EI24 Nonsense_Mutation p.Q73* 0.35 TCGA-EE-A3AC-06 11 130319456 130319456 G A ADAMTS15 Silent p.A196A 0.27 TCGA-EE-A3AC-06 11 14913746 14913746 C T CYP2R1 Nonsense_Mutation p.W2* 0.25 TCGA-EE-A3AC-06 11 1643030 1643030 C T KRTAP5-4 Silent p.K98K 0.11 TCGA-EE-A3AC-06 11 17316984 17316984 C T NUCB2 Silent p.H38H 0.41 TCGA-EE-A3AC-06 11 17430031 17430031 C T ABCC8 Missense_Mutation p.E910K 0.44 tolerated(0.08) benign(0.076) TCGA-EE-A3AC-06 11 18765740 18765740 G A PTPN5 Missense_Mutation p.P35L 0.33 deleterious_low_confidence(0) benign(0.075) TCGA-EE-A3AC-06 11 244428 244428 C T PSMD13 Missense_Mutation p.P92S 0.37 tolerated(0.28) benign(0.086) TCGA-EE-A3AC-06 11 28113042 28113042 G A KIF18A Missense_Mutation p.R168C 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 11 32635300 32635300 C T CCDC73 Missense_Mutation p.G855E 0.36 tolerated(0.33) benign(0.054) TCGA-EE-A3AC-06 11 32705120 32705120 C T CCDC73 Missense_Mutation p.V131I 0.29 tolerated(0.65) possibly_damaging(0.777) TCGA-EE-A3AC-06 11 33880876 33880876 C T LMO2 3'UTR 0.39 TCGA-EE-A3AC-06 11 36595095 36595095 T G RAG1 Missense_Mutation p.L81V 0.40 tolerated_low_confidence(0.16) benign(0.001) TCGA-EE-A3AC-06 11 380832 380832 G A B4GALNT4 Nonsense_Mutation p.W959* 0.38 TCGA-EE-A3AC-06 11 4608408 4608408 C T OR52I2 Silent p.I122I 0.34 TCGA-EE-A3AC-06 11 46407402 46407402 C T CHRM4 Missense_Mutation p.E236K 0.54 tolerated(0.59) benign(0.021) TCGA-EE-A3AC-06 11 46534347 46534347 A G AMBRA1 Missense_Mutation p.S607P 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A3AC-06 11 47374254 47374254 G A SPI1 3'Flank 0.30 TCGA-EE-A3AC-06 11 4825415 4825415 G A OR52R1 Silent p.L66L 0.28 TCGA-EE-A3AC-06 11 48267210 48267210 C T OR4X2 Silent p.F185F 0.36 TCGA-EE-A3AC-06 11 4842988 4842988 G A OR51F2 Missense_Mutation p.E125K 0.39 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AC-06 11 48510571 48510571 C T OR4A47 Missense_Mutation p.S76F 0.26 deleterious_low_confidence(0.01) benign(0.008) TCGA-EE-A3AC-06 11 48510798 48510798 C T OR4A47 Silent p.L152L 0.24 TCGA-EE-A3AC-06 11 4936324 4936324 C T OR51G2 Missense_Mutation p.M190I 0.26 tolerated(0.27) probably_damaging(0.992) TCGA-EE-A3AC-06 11 49597758 49597758 C T RP11-707M1.1 RNA 0.62 TCGA-EE-A3AC-06 11 4976492 4976492 G A OR51A2 Missense_Mutation p.S151F 0.71 tolerated(0.18) benign(0.008) TCGA-EE-A3AC-06 11 5020311 5020311 C T OR51L1 Silent p.F33F 0.41 TCGA-EE-A3AC-06 11 51515496 51515496 C T OR4C46 Missense_Mutation p.S72F 0.36 deleterious_low_confidence(0.01) benign(0.114) TCGA-EE-A3AC-06 11 5462122 5462122 G A OR51I1 Missense_Mutation p.T208I 0.50 deleterious(0.04) benign(0.132) TCGA-EE-A3AC-06 11 5510206 5510206 C T OR52D1 Silent p.L90L 0.50 TCGA-EE-A3AC-06 11 55340152 55340152 G A OR4C16 Silent p.L183L 0.34 TCGA-EE-A3AC-06 11 55406121 55406121 G A OR4P4 Missense_Mutation p.M96I 0.41 tolerated(0.1) benign(0.178) TCGA-EE-A3AC-06 11 55419298 55419298 G A OR4S2 Missense_Mutation p.E307K 0.28 tolerated(0.48) benign(0.001) TCGA-EE-A3AC-06 11 55433041 55433041 C T OR4C6 Silent p.I133I 0.47 TCGA-EE-A3AC-06 11 55563223 55563223 C T OR5D14 Silent p.F64F 0.39 TCGA-EE-A3AC-06 11 55890025 55890025 C T OR8H3 Silent p.P59P 0.21 TCGA-EE-A3AC-06 11 56185123 56185123 C T OR5R1 Missense_Mutation p.E196K 0.36 tolerated(0.06) benign(0.345) TCGA-EE-A3AC-06 11 56310364 56310364 C T OR5M11 Missense_Mutation p.A124T 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 11 56757090 56757090 G A OR5AK2 Silent p.R234R 0.34 TCGA-EE-A3AC-06 11 57003293 57003293 C T APLNR 3'UTR 0.52 TCGA-EE-A3AC-06 11 57070167 57070167 C G TNKS1BP1 Missense_Mutation p.E1483D 0.40 deleterious(0.02) benign(0.133) TCGA-EE-A3AC-06 11 58722282 58722282 C T GLYATL1 Missense_Mutation p.R107C 0.37 deleterious(0.05) benign(0.002) TCGA-EE-A3AC-06 11 58722804 58722804 C T GLYATL1 Missense_Mutation p.H188Y 0.23 tolerated(0.63) possibly_damaging(0.538) TCGA-EE-A3AC-06 11 59828728 59828728 C T MS4A3 Missense_Mutation p.S32F 0.40 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3AC-06 11 61405065 61405065 C G RPLP0P2 RNA 0.31 TCGA-EE-A3AC-06 11 61732864 61732864 G A FTH1 Nonsense_Mutation p.R80* 0.44 TCGA-EE-A3AC-06 11 61908274 61908274 C T INCENP Missense_Mutation p.S481L 0.48 deleterious(0) benign(0.184) TCGA-EE-A3AC-06 11 62296332 62296332 G A AHNAK Missense_Mutation p.P1853S 0.38 possibly_damaging(0.803) TCGA-EE-A3AC-06 11 62361997 62361997 G A MTA2 Silent p.A561A 0.51 TCGA-EE-A3AC-06 11 6292321 6292321 C T CCKBR Missense_Mutation p.P298S 0.33 tolerated(0.83) benign(0.012) TCGA-EE-A3AC-06 11 62997062 62997062 C T SLC22A25 Missense_Mutation p.M21I 0.16 tolerated(0.32) benign(0.002) TCGA-EE-A3AC-06 11 64064709 64064709 C T KCNK4 Silent p.S144S 0.35 TCGA-EE-A3AC-06 11 64137218 64137218 C T RPS6KA4 Silent p.I550I 0.56 TCGA-EE-A3AC-06 11 64367873 64367873 G A SLC22A12 Silent p.L440L 0.32 TCGA-EE-A3AC-06 11 64367883 64367883 G A SLC22A12 Missense_Mutation p.G444R 0.29 tolerated(0.1) benign(0.184) TCGA-EE-A3AC-06 11 6477915 6477915 G A TRIM3 Silent p.T347T 0.51 TCGA-EE-A3AC-06 11 65269783 65269784 - T MALAT1 RNA 0.24 TCGA-EE-A3AC-06 11 66393940 66393940 C T RBM14 Missense_Mutation p.S604F 0.43 deleterious(0) unknown(0) TCGA-EE-A3AC-06 11 6866924 6866924 G A OR10A5 Missense_Mutation p.G4E 0.41 tolerated(0.32) benign(0.004) TCGA-EE-A3AC-06 11 71847002 71847002 G A FOLR3 Missense_Mutation p.D2N 0.28 tolerated(0.32) unknown(0) TCGA-EE-A3AC-06 11 72466782 72466782 C T STARD10 Nonsense_Mutation p.W198* 0.42 TCGA-EE-A3AC-06 11 73067264 73067264 C T ARHGEF17 Silent p.L1236L 0.41 TCGA-EE-A3AC-06 11 74800065 74800065 G A OR2AT4 Missense_Mutation p.R232C 0.44 tolerated(0.1) benign(0.015) TCGA-EE-A3AC-06 11 74911427 74911427 C T SLCO2B1 Silent p.I586I 0.41 TCGA-EE-A3AC-06 11 75316809 75316809 G A MAP6 Intron 0.49 TCGA-EE-A3AC-06 11 75495679 75495679 C T DGAT2 Silent p.I46I 0.40 TCGA-EE-A3AC-06 11 83243803 83243803 C T DLG2 Missense_Mutation p.R714Q 0.37 deleterious(0) possibly_damaging(0.586) TCGA-EE-A3AC-06 11 8486300 8486300 C T STK33 Missense_Mutation p.E137K 0.32 tolerated(0.07) benign(0.14) TCGA-EE-A3AC-06 11 89531642 89531642 C T TRIM49 Missense_Mutation p.G339S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 11 92614005 92614005 G A FAT3 Missense_Mutation p.G4079E 0.39 probably_damaging(0.992) TCGA-EE-A3AC-06 11 94040783 94040783 C T FOLR4 Silent p.F219F 0.40 TCGA-EE-A3AC-06 11 94204767 94204767 G A MRE11A Missense_Mutation p.S273F 0.40 deleterious(0) probably_damaging(0.963) TCGA-EE-A3AC-06 11 94705258 94705258 G A CWC15 Missense_Mutation p.S31L 0.40 deleterious(0) possibly_damaging(0.765) TCGA-EE-A3AC-06 11 94705350 94705350 C T CWC15 5'UTR 0.38 TCGA-EE-A3AC-06 12 101437354 101437354 C T ANO4 Missense_Mutation p.P363S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 12 101880381 101880381 C T SPIC Silent p.F193F 0.33 TCGA-EE-A3AC-06 12 102057335 102057335 G A MYBPC1 Missense_Mutation p.G760R 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 12 102108354 102108354 T C CHPT1 Missense_Mutation p.F165S 0.42 deleterious(0.02) possibly_damaging(0.775) TCGA-EE-A3AC-06 12 1025435 1025435 G A RAD52 Intron 0.36 TCGA-EE-A3AC-06 12 104044327 104044327 C T STAB2 Missense_Mutation p.P410S 0.38 deleterious(0) possibly_damaging(0.674) TCGA-EE-A3AC-06 12 104067779 104067779 C T STAB2 Silent p.L822L 0.32 TCGA-EE-A3AC-06 12 104149468 104149468 C T STAB2 Missense_Mutation p.S2320F 0.44 deleterious(0) benign(0.425) TCGA-EE-A3AC-06 12 104497010 104497010 C T HCFC2 Missense_Mutation p.R780W 0.36 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AC-06 12 10772720 10772720 G A STYK1 3'UTR 0.43 TCGA-EE-A3AC-06 12 108985639 108985639 G A TMEM119 Missense_Mutation p.A174V 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 12 109186549 109186549 G A SSH1 Missense_Mutation p.P469L 0.40 tolerated(0.11) benign(0.019) TCGA-EE-A3AC-06 12 109660704 109660704 C T ACACB Missense_Mutation p.P1260L 0.28 tolerated(0.19) probably_damaging(1) TCGA-EE-A3AC-06 12 109671600 109671600 C T ACACB Missense_Mutation p.T1396I 0.25 tolerated(0.21) benign(0.005) TCGA-EE-A3AC-06 12 110232206 110232206 G A TRPV4 Silent p.I473I 0.29 TCGA-EE-A3AC-06 12 11545984 11545984 C T PRB2 Missense_Mutation p.G343E 0.33 tolerated(0.15) unknown(0) TCGA-EE-A3AC-06 12 121970772 121970772 G A KDM2B Silent p.D290D 0.44 TCGA-EE-A3AC-06 12 12232276 12232276 C T BCL2L14 Missense_Mutation p.P13S 0.37 tolerated(0.14) probably_damaging(1) TCGA-EE-A3AC-06 12 122825945 122825945 G A CLIP1 Silent p.N602N 0.37 TCGA-EE-A3AC-06 12 124265689 124265689 T G DNAH10 Silent p.S167S 0.32 TCGA-EE-A3AC-06 12 124325937 124325937 G A DNAH10 Missense_Mutation p.M1617I 0.43 possibly_damaging(0.718) TCGA-EE-A3AC-06 12 124846766 124846766 C T NCOR2 Silent p.P1002P 0.11 TCGA-EE-A3AC-06 12 12496028 12496028 G A MANSC1 Missense_Mutation p.S74L 0.29 deleterious(0.01) possibly_damaging(0.543) TCGA-EE-A3AC-06 12 130834508 130834508 G A PIWIL1 Missense_Mutation p.R347K 0.36 tolerated(1) benign(0.003) TCGA-EE-A3AC-06 12 132398952 132398952 C T ULK1 Missense_Mutation p.P435S 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 12 132502894 132502894 C T EP400 Missense_Mutation p.P1417L 0.26 unknown(0) TCGA-EE-A3AC-06 12 132529956 132529956 C T EP400 Missense_Mutation p.R2293C 0.27 unknown(0) TCGA-EE-A3AC-06 12 13715631 13715631 C T GRIN2B 3'UTR 0.25 TCGA-EE-A3AC-06 12 14018747 14018747 C T GRIN2B Missense_Mutation p.M132I 0.39 tolerated(0.17) probably_damaging(0.977) TCGA-EE-A3AC-06 12 14578282 14578282 C T ATF7IP Missense_Mutation p.P478L 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-EE-A3AC-06 12 14958832 14958832 T C SMCO3 3'UTR 0.27 TCGA-EE-A3AC-06 12 21054336 21054336 G A SLCO1B3 Missense_Mutation p.M600I 0.39 tolerated(0.09) benign(0.02) TCGA-EE-A3AC-06 12 2705039 2705039 G A CACNA1C Splice_Site p.X888_splice 0.46 TCGA-EE-A3AC-06 12 32133938 32133938 C T KIAA1551 Missense_Mutation p.P17S 0.28 tolerated(0.41) benign(0.046) TCGA-EE-A3AC-06 12 33532820 33532820 C T SYT10 Missense_Mutation p.E483K 0.28 deleterious(0.02) benign(0.186) TCGA-EE-A3AC-06 12 33535372 33535372 G A SYT10 Missense_Mutation p.P428S 0.42 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AC-06 12 33559748 33559748 C T SYT10 Nonsense_Mutation p.W351* 0.33 TCGA-EE-A3AC-06 12 33559763 33559763 C T SYT10 Silent p.R346R 0.44 TCGA-EE-A3AC-06 12 43822449 43822449 C T ADAMTS20 Missense_Mutation p.D1215N 0.50 tolerated(0.44) benign(0.005) TCGA-EE-A3AC-06 12 46298733 46298733 G T ARID2 Nonsense_Mutation p.E1794* 0.51 TCGA-EE-A3AC-06 12 46298878 46298878 C T ARID2 3'UTR 0.67 TCGA-EE-A3AC-06 12 48134707 48134707 A G RAPGEF3 Silent p.S680S 0.37 TCGA-EE-A3AC-06 12 4855410 4855410 G A GALNT8 Missense_Mutation p.E387K 0.51 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AC-06 12 48919933 48919933 C T OR8S1 Silent p.I173I 0.36 TCGA-EE-A3AC-06 12 49425489 49425489 C T KMT2D Silent p.E4333E 0.27 TCGA-EE-A3AC-06 12 51686091 51686091 G A BIN2 Nonsense_Mutation p.R267* 0.45 TCGA-EE-A3AC-06 12 52845869 52845869 A C KRT6B 5'UTR 0.34 TCGA-EE-A3AC-06 12 52882250 52882250 C A KRT6A Missense_Mutation p.G429V 0.30 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A3AC-06 12 52963700 52963700 C T KRT74 Silent p.V359V 0.31 TCGA-EE-A3AC-06 12 53096951 53096951 C T KRT77 Missense_Mutation p.G90R 0.55 deleterious(0.04) benign(0.004) TCGA-EE-A3AC-06 12 55820217 55820217 C T OR6C76 Silent p.F60F 0.33 TCGA-EE-A3AC-06 12 55846409 55846409 G A OR6C2 Missense_Mutation p.V138M 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.822) TCGA-EE-A3AC-06 12 56998871 56998871 G C BAZ2A Missense_Mutation p.P914A 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3AC-06 12 57351000 57351000 C T RDH16 Missense_Mutation p.D83N 0.46 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A3AC-06 12 57485290 57485290 C A NAB2 Missense_Mutation p.R156S 0.12 tolerated(0.53) possibly_damaging(0.532) TCGA-EE-A3AC-06 12 57600503 57600503 C T LRP1 Silent p.D3946D 0.26 TCGA-EE-A3AC-06 12 66605284 66605284 C T IRAK3 Silent p.F165F 0.51 TCGA-EE-A3AC-06 12 66838422 66838422 G A GRIP1 Silent p.L491L 0.46 TCGA-EE-A3AC-06 12 6772303 6772303 G - ING4 5'UTR 0.13 TCGA-EE-A3AC-06 12 7050626 7050626 C A ATN1 Missense_Mutation p.L1150M 0.42 probably_damaging(0.917) TCGA-EE-A3AC-06 12 70918314 70918314 G A PTPRB Missense_Mutation p.R2188W 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AC-06 12 70933765 70933765 G A PTPRB Missense_Mutation p.R1878C 0.34 deleterious(0) probably_damaging(0.944) TCGA-EE-A3AC-06 12 71977897 71977897 G A LGR5 Missense_Mutation p.G703S 0.41 tolerated(0.75) benign(0.103) TCGA-EE-A3AC-06 12 79611408 79611408 G A SYT1 Missense_Mutation p.E37K 0.18 tolerated(0.61) benign(0.044) TCGA-EE-A3AC-06 12 79689912 79689912 C T SYT1 Missense_Mutation p.P180S 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AC-06 12 80722851 80722851 G A OTOGL Missense_Mutation p.E1425K 0.26 tolerated(0.13) benign(0.029) TCGA-EE-A3AC-06 12 80765831 80765831 C T OTOGL Silent p.G2247G 0.32 TCGA-EE-A3AC-06 12 88483138 88483138 A T CEP290 Missense_Mutation p.Y1234N 0.37 benign(0.093) TCGA-EE-A3AC-06 12 89917791 89917791 C T GALNT4 Missense_Mutation p.R179K 0.40 tolerated(0.66) benign(0.005) TCGA-EE-A3AC-06 12 91363872 91363872 C T EPYC Silent p.L249L 0.38 TCGA-EE-A3AC-06 12 95927372 95927372 G A USP44 Nonsense_Mutation p.Q221* 0.41 TCGA-EE-A3AC-06 13 100637612 100637612 C T ZIC2 Silent p.S425S 0.23 TCGA-EE-A3AC-06 13 101733962 101733962 G A NALCN Silent p.G1267G 0.39 TCGA-EE-A3AC-06 13 103301256 103301256 G A TPP2 Splice_Site p.X877_splice 0.44 TCGA-EE-A3AC-06 13 103301765 103301765 A G TPP2 Missense_Mutation p.K961E 0.28 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AC-06 13 110835383 110835383 C T COL4A1 Silent p.V684V 0.37 TCGA-EE-A3AC-06 13 20048070 20048070 G A TPTE2 Nonsense_Mutation p.R126* 0.42 TCGA-EE-A3AC-06 13 20277353 20277353 C T PSPC1 Missense_Mutation p.G512S 0.10 deleterious_low_confidence(0.03) probably_damaging(0.934) TCGA-EE-A3AC-06 13 21013861 21013861 C T CRYL1 Silent p.K103K 0.40 TCGA-EE-A3AC-06 13 25262538 25262538 A T ATP12A Missense_Mutation p.I104F 0.41 tolerated(0.12) possibly_damaging(0.474) TCGA-EE-A3AC-06 13 30062078 30062078 G A MTUS2 Silent p.E1157E 0.39 TCGA-EE-A3AC-06 13 33703805 33703805 C T STARD13 Missense_Mutation p.E337K 0.44 tolerated(0.57) benign(0.066) TCGA-EE-A3AC-06 13 46276538 46276538 G A SPERT Missense_Mutation p.E5K 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AC-06 13 48523624 48523624 A G SUCLA2 Silent p.L408L 0.30 TCGA-EE-A3AC-06 13 53240968 53240968 C T SUGT1 Missense_Mutation p.P213S 0.32 tolerated(0.18) benign(0.113) TCGA-EE-A3AC-06 13 53240969 53240969 C T SUGT1 Missense_Mutation p.P213L 0.33 deleterious(0) possibly_damaging(0.772) TCGA-EE-A3AC-06 13 61987197 61987197 C T PCDH20 Silent p.V345V 0.38 TCGA-EE-A3AC-06 13 76169099 76169099 C T UCHL3 Missense_Mutation p.H175Y 0.35 deleterious(0) possibly_damaging(0.839) TCGA-EE-A3AC-06 13 77635390 77635390 C T MYCBP2 Missense_Mutation p.G4279D 0.30 probably_damaging(0.997) TCGA-EE-A3AC-06 13 77671818 77671818 G A MYCBP2 Silent p.P3119P 0.45 TCGA-EE-A3AC-06 13 78183195 78183195 C T SCEL Missense_Mutation p.S407F 0.39 deleterious(0.03) benign(0.048) TCGA-EE-A3AC-06 13 96246260 96246260 C T DZIP1 Missense_Mutation p.G540R 0.36 deleterious(0.02) benign(0.003) TCGA-EE-A3AC-06 13 96329484 96329484 T C DNAJC3 5'UTR 0.33 TCGA-EE-A3AC-06 13 99356649 99356649 C T SLC15A1 Missense_Mutation p.R437K 0.30 tolerated(0.88) benign(0) TCGA-EE-A3AC-06 14 100363551 100363551 C T EML1 Silent p.F268F 0.56 TCGA-EE-A3AC-06 14 100847981 100847981 C T WDR25 Silent p.F240F 0.26 TCGA-EE-A3AC-06 14 101513721 101513721 T C MIR539 RNA 0.39 TCGA-EE-A3AC-06 14 102452744 102452744 C T DYNC1H1 Nonsense_Mutation p.R728* 0.40 TCGA-EE-A3AC-06 14 105178850 105178850 C T INF2 Missense_Mutation p.S857F 0.39 deleterious(0) unknown(0) TCGA-EE-A3AC-06 14 105418164 105418164 G A AHNAK2 Silent p.T1208T 0.69 TCGA-EE-A3AC-06 14 106621913 106621913 G A IGHV3-16 Missense_Mutation p.A111V 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.705) TCGA-EE-A3AC-06 14 106926359 106926359 C T IGHV3-43 Silent p.G61G 0.29 TCGA-EE-A3AC-06 14 107218762 107218762 T A IGHV3-74 Missense_Mutation p.I89F 0.35 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-EE-A3AC-06 14 19562047 19562047 G A POTEG Silent p.V288V 0.71 TCGA-EE-A3AC-06 14 20692397 20692397 C T OR11H6 Missense_Mutation p.P177S 0.61 tolerated(0.14) benign(0.1) TCGA-EE-A3AC-06 14 21109460 21109460 G A OR6S1 Missense_Mutation p.P131S 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AC-06 14 22005131 22005131 C T SALL2 5'UTR 0.62 TCGA-EE-A3AC-06 14 22192504 22192504 C T TRAV3 Silent p.F93F 0.51 TCGA-EE-A3AC-06 14 22315112 22315112 G A TRAV8-2 Missense_Mutation p.G17E 0.23 tolerated(0.15) benign(0.063) TCGA-EE-A3AC-06 14 24538049 24538049 G A LRRC16B Missense_Mutation p.G1286S 0.56 tolerated_low_confidence(0.35) unknown(0) TCGA-EE-A3AC-06 14 24883901 24883901 C T NYNRIN Silent p.P982P 0.31 TCGA-EE-A3AC-06 14 25043014 25043014 C T CTSG Silent p.G199G 0.33 TCGA-EE-A3AC-06 14 32560526 32560526 A G ARHGAP5 Silent p.S217S 0.36 TCGA-EE-A3AC-06 14 35005439 35005439 G A EAPP Silent p.D39D 0.43 TCGA-EE-A3AC-06 14 36123592 36123592 G A RALGAPA1 Missense_Mutation p.S1357F 0.57 tolerated(0.09) benign(0.21) TCGA-EE-A3AC-06 14 38724757 38724757 C T CLEC14A Nonsense_Mutation p.W157* 0.53 TCGA-EE-A3AC-06 14 39706219 39706219 T G MIA2 Missense_Mutation p.V70G 0.41 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3AC-06 14 50807787 50807787 C T CDKL1 Silent p.S207S 0.34 TCGA-EE-A3AC-06 14 51226703 51226703 G A NIN Silent p.G757G 0.30 TCGA-EE-A3AC-06 14 56133973 56133973 G A KTN1 Silent p.Q1064Q 0.40 TCGA-EE-A3AC-06 14 60932705 60932705 C T C14orf39 Missense_Mutation p.D322N 0.50 tolerated(0.54) possibly_damaging(0.908) TCGA-EE-A3AC-06 14 63246624 63246624 C T KCNH5 Missense_Mutation p.G614E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 14 66082806 66082806 G A FUT8 Missense_Mutation p.R105K 0.33 tolerated(0.94) benign(0.01) TCGA-EE-A3AC-06 14 69787427 69787427 G A GALNT16 Splice_Site p.X60_splice 0.42 TCGA-EE-A3AC-06 14 70263759 70263759 G A SLC10A1 Silent p.I38I 0.47 TCGA-EE-A3AC-06 14 70713730 70713730 C T ADAM21P1 RNA 0.28 TCGA-EE-A3AC-06 14 70926399 70926399 A G ADAM21 3'UTR 0.40 TCGA-EE-A3AC-06 14 72055757 72055757 G A SIPA1L1 Missense_Mutation p.E390K 0.40 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AC-06 14 73538420 73538420 C T RBM25 Missense_Mutation p.P24L 0.39 probably_damaging(0.958) TCGA-EE-A3AC-06 14 77718135 77718135 C T TMEM63C Missense_Mutation p.S681F 0.49 tolerated(1) benign(0.365) TCGA-EE-A3AC-06 14 79432483 79432483 C T NRXN3 Silent p.S464S 0.40 TCGA-EE-A3AC-06 14 81743422 81743422 C T STON2 Missense_Mutation p.E745K 0.34 deleterious(0.03) possibly_damaging(0.516) TCGA-EE-A3AC-06 14 91779427 91779427 C T CCDC88C Silent p.R911R 0.36 TCGA-EE-A3AC-06 14 93290921 93290921 C T GOLGA5 Nonsense_Mutation p.R551* 0.41 TCGA-EE-A3AC-06 14 94203701 94203701 G A PRIMA1 Missense_Mutation p.S82F 0.26 tolerated(0.86) probably_damaging(0.992) TCGA-EE-A3AC-06 14 99969075 99969075 G A CCNK Silent p.L255L 0.42 TCGA-EE-A3AC-06 15 102201986 102201986 G A TARSL2 Silent p.I667I 0.38 TCGA-EE-A3AC-06 15 22382940 22382940 C T OR4N4 Silent p.S156S 0.13 TCGA-EE-A3AC-06 15 23890640 23890640 C T MAGEL2 Missense_Mutation p.M147I 0.33 deleterious_low_confidence(0) benign(0.051) TCGA-EE-A3AC-06 15 24922593 24922593 C T NPAP1 Missense_Mutation p.L527F 0.32 tolerated(0.5) benign(0.083) TCGA-EE-A3AC-06 15 25349771 25349771 C T SNORD116-30 5'Flank 0.28 TCGA-EE-A3AC-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.37 TCGA-EE-A3AC-06 15 25488827 25488827 G A SNORD115-40 RNA 0.40 TCGA-EE-A3AC-06 15 26793166 26793166 C T GABRB3 Missense_Mutation p.G399E 0.34 deleterious(0.04) benign(0.345) TCGA-EE-A3AC-06 15 26793167 26793167 C T GABRB3 Missense_Mutation p.G399R 0.33 tolerated(0.14) possibly_damaging(0.548) TCGA-EE-A3AC-06 15 34635360 34635360 C T NOP10 5'UTR 0.40 TCGA-EE-A3AC-06 15 38990679 38990679 G A C15orf53 Missense_Mutation p.R158K 0.27 tolerated_low_confidence(1) benign(0) TCGA-EE-A3AC-06 15 39886347 39886347 C T THBS1 Silent p.F1105F 0.46 TCGA-EE-A3AC-06 15 41799333 41799333 C T LTK Missense_Mutation p.G501S 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3AC-06 15 43237663 43237663 C A UBR1 Missense_Mutation p.G1705V 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 15 43237664 43237664 C T UBR1 Missense_Mutation p.G1705S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 15 43476732 43476732 C T TMEM62 Missense_Mutation p.S627F 0.36 deleterious(0.01) possibly_damaging(0.632) TCGA-EE-A3AC-06 15 43552317 43552317 G A TGM5 Silent p.S123S 0.49 TCGA-EE-A3AC-06 15 43873490 43873490 G A PPIP5K1 Nonsense_Mutation p.R292* 0.42 TCGA-EE-A3AC-06 15 44673052 44673052 C T CASC4 Missense_Mutation p.P317L 0.45 deleterious(0.03) benign(0.025) TCGA-EE-A3AC-06 15 45412962 45412962 C T DUOXA1 Missense_Mutation p.E128K 0.37 deleterious(0.01) probably_damaging(0.918) TCGA-EE-A3AC-06 15 45694681 45694681 C T SPATA5L1 Silent p.P18P 0.47 TCGA-EE-A3AC-06 15 53049695 53049695 A - ONECUT1 3'UTR 0.28 TCGA-EE-A3AC-06 15 53049736 53049736 G C ONECUT1 3'UTR 0.39 TCGA-EE-A3AC-06 15 57745996 57745996 G A CGNL1 Missense_Mutation p.E724K 0.25 deleterious(0.03) probably_damaging(0.967) TCGA-EE-A3AC-06 15 63336315 63336315 G - TPM1 Frame_Shift_Del p.E69Rfs*17 0.09 TCGA-EE-A3AC-06 15 65490444 65490444 C T CILP Missense_Mutation p.R727K 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3AC-06 15 67073700 67073700 G A SMAD6 Missense_Mutation p.D440N 0.36 deleterious(0) probably_damaging(0.972) TCGA-EE-A3AC-06 15 68643004 68643004 G A ITGA11 Silent p.A337A 0.27 TCGA-EE-A3AC-06 15 68643005 68643005 G A ITGA11 Missense_Mutation p.A337V 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 15 69728068 69728068 C T KIF23 Silent p.I410I 0.44 TCGA-EE-A3AC-06 15 72030236 72030236 C T THSD4 Missense_Mutation p.P599L 0.33 tolerated(0.09) benign(0.001) TCGA-EE-A3AC-06 15 72122637 72122637 G A MYO9A Missense_Mutation p.R2285C 0.39 deleterious(0.02) possibly_damaging(0.667) TCGA-EE-A3AC-06 15 73622049 73622049 C G HCN4 Silent p.A485A 0.33 TCGA-EE-A3AC-06 15 75012991 75012991 C T CYP1A1 Missense_Mutation p.E460K 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 15 75044176 75044176 G A CYP1A2 Silent p.R341R 0.37 TCGA-EE-A3AC-06 15 75982483 75982483 G A CSPG4 Missense_Mutation p.S308L 0.38 deleterious(0) possibly_damaging(0.8) TCGA-EE-A3AC-06 15 76175716 76175716 C T UBE2Q2 Missense_Mutation p.P279S 0.38 deleterious(0.02) possibly_damaging(0.767) TCGA-EE-A3AC-06 15 78401717 78401717 G A CIB2 Missense_Mutation p.P69L 0.48 deleterious(0.03) possibly_damaging(0.869) TCGA-EE-A3AC-06 15 79064056 79064056 G A ADAMTS7 Silent p.L749L 0.33 TCGA-EE-A3AC-06 15 79064058 79064058 G A ADAMTS7 Missense_Mutation p.L749F 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AC-06 15 81212561 81212561 G A KIAA1199 Missense_Mutation p.D642N 0.28 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AC-06 15 86807958 86807958 G A AGBL1 Missense_Mutation p.R473K 0.49 tolerated(1) benign(0.004) TCGA-EE-A3AC-06 15 91769448 91769448 G A SV2B 5'UTR 0.36 TCGA-EE-A3AC-06 15 91795186 91795186 G A SV2B Missense_Mutation p.G197R 0.40 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AC-06 15 91795187 91795187 G A SV2B Missense_Mutation p.G197E 0.41 deleterious(0.01) benign(0.424) TCGA-EE-A3AC-06 16 10788374 10788374 G A TEKT5 Silent p.S119S 0.36 TCGA-EE-A3AC-06 16 10788375 10788375 G A TEKT5 Missense_Mutation p.S119F 0.35 deleterious(0) benign(0.2) TCGA-EE-A3AC-06 16 15841753 15841753 C T MYH11 Missense_Mutation p.G750E 0.24 probably_damaging(1) TCGA-EE-A3AC-06 16 15931849 15931849 C T MYH11 Silent p.V87V 0.36 TCGA-EE-A3AC-06 16 16177255 16177255 G A ABCC1 Nonsense_Mutation p.W716* 0.33 TCGA-EE-A3AC-06 16 20380929 20380929 G A PDILT Missense_Mutation p.P334L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 16 20952783 20952783 G A DNAH3 Missense_Mutation p.P3865L 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 16 22926467 22926467 G A HS3ST2 Missense_Mutation p.G230S 0.43 tolerated(1) benign(0.007) TCGA-EE-A3AC-06 16 2376429 2376429 C T ABCA3 Silent p.K13K 0.41 TCGA-EE-A3AC-06 16 25228638 25228638 C T AQP8 Silent p.G44G 0.40 TCGA-EE-A3AC-06 16 27499546 27499546 A G GTF3C1 Splice_Site p.X1234_splice 0.34 TCGA-EE-A3AC-06 16 28508931 28508931 C T APOBR Missense_Mutation p.P857S 0.60 tolerated(0.42) benign(0.001) TCGA-EE-A3AC-06 16 29891210 29891210 C T SEZ6L2 Nonsense_Mutation p.W516* 0.42 TCGA-EE-A3AC-06 16 30133240 30133240 G A MAPK3 Silent p.L86L 0.32 TCGA-EE-A3AC-06 16 30748595 30748595 A T SRCAP Missense_Mutation p.T2412S 0.26 possibly_damaging(0.522) TCGA-EE-A3AC-06 16 30748596 30748596 C T SRCAP Missense_Mutation p.T2412I 0.26 possibly_damaging(0.699) TCGA-EE-A3AC-06 16 31422778 31422778 G A ITGAD Silent p.R549R 0.31 TCGA-EE-A3AC-06 16 31501777 31501777 C T SLC5A2 Missense_Mutation p.P647L 0.34 deleterious(0.01) benign(0.008) TCGA-EE-A3AC-06 16 31896570 31896570 C T ZNF267 Silent p.I73I 0.48 TCGA-EE-A3AC-06 16 3294267 3294267 C T MEFV Missense_Mutation p.M582I 0.41 tolerated(0.12) benign(0.017) TCGA-EE-A3AC-06 16 48167728 48167728 C T ABCC12 Missense_Mutation p.R333K 0.23 tolerated(0.33) benign(0.009) TCGA-EE-A3AC-06 16 5053556 5053556 C G SEC14L5 Missense_Mutation p.F428L 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A3AC-06 16 56602761 56602761 C T MT4 Missense_Mutation p.P36S 0.30 tolerated(1) possibly_damaging(0.876) TCGA-EE-A3AC-06 16 56928513 56928513 C T SLC12A3 Silent p.F873F 0.36 TCGA-EE-A3AC-06 16 57007240 57007240 C T CETP Intron 0.37 TCGA-EE-A3AC-06 16 67029612 67029612 C T CES4A Missense_Mutation p.P47L 0.44 tolerated(0.08) benign(0.006) TCGA-EE-A3AC-06 16 67262721 67262721 A G TMEM208 Silent p.L107L 0.36 TCGA-EE-A3AC-06 16 68225340 68225340 C T NFATC3 Missense_Mutation p.A923V 0.46 deleterious_low_confidence(0) benign(0.089) TCGA-EE-A3AC-06 16 68349951 68349951 C T PRMT7 Silent p.H23H 0.32 TCGA-EE-A3AC-06 16 69373728 69373728 G A NIP7 5'UTR 0.34 TCGA-EE-A3AC-06 16 70030043 70030043 G A PDXDC2P RNA 0.56 TCGA-EE-A3AC-06 16 71674572 71674572 G A MARVELD3 Missense_Mutation p.R292Q 0.52 deleterious(0) benign(0.009) TCGA-EE-A3AC-06 16 739256 739256 G A WDR24 Missense_Mutation p.H129Y 0.36 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AC-06 16 75203807 75203807 C T ZFP1 Missense_Mutation p.P267S 0.54 deleterious(0.03) probably_damaging(0.988) TCGA-EE-A3AC-06 16 76482753 76482753 C T CNTNAP4 Nonsense_Mutation p.Q253* 0.43 TCGA-EE-A3AC-06 16 76482807 76482807 C T CNTNAP4 Missense_Mutation p.H271Y 0.37 deleterious(0.05) benign(0.297) TCGA-EE-A3AC-06 16 775518 775518 G A CCDC78 Silent p.G110G 0.46 TCGA-EE-A3AC-06 16 82033703 82033703 C T SDR42E1 Silent p.E65E 0.32 TCGA-EE-A3AC-06 16 82131705 82131705 G A HSD17B2 Nonsense_Mutation p.W276* 0.43 TCGA-EE-A3AC-06 16 83711825 83711825 G A CDH13 Missense_Mutation p.E480K 0.46 deleterious(0) probably_damaging(0.94) TCGA-EE-A3AC-06 16 87451258 87451258 A C ZCCHC14 Silent p.P260P 0.37 TCGA-EE-A3AC-06 16 8862081 8862081 C A ABAT Missense_Mutation p.S212Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 16 8862082 8862082 C T ABAT Silent p.S212S 0.45 TCGA-EE-A3AC-06 16 88643950 88643950 C T ZC3H18 Missense_Mutation p.P140L 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3AC-06 16 88643951 88643951 C T ZC3H18 Silent p.P140P 0.29 TCGA-EE-A3AC-06 17 10536071 10536071 G A MYH3 Missense_Mutation p.L1560F 0.65 deleterious(0.01) benign(0.031) TCGA-EE-A3AC-06 17 16722502 16722502 G A AC022596.6 RNA 0.71 TCGA-EE-A3AC-06 17 16722503 16722503 G A AC022596.6 RNA 0.71 TCGA-EE-A3AC-06 17 1840680 1840680 C T RTN4RL1 Missense_Mutation p.G146S 0.47 tolerated(0.39) benign(0.006) TCGA-EE-A3AC-06 17 27008341 27008341 C T SUPT6H Nonsense_Mutation p.R473* 0.51 TCGA-EE-A3AC-06 17 31323938 31323938 G A SPACA3 Missense_Mutation p.G141R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 17 34192286 34192286 C T C17orf66 Missense_Mutation p.D85N 0.28 tolerated(0.13) benign(0) TCGA-EE-A3AC-06 17 34249679 34249679 C T RDM1 Missense_Mutation p.G190E 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3AC-06 17 34415948 34415948 C T CCL3 3'UTR 0.21 TCGA-EE-A3AC-06 17 36708269 36708269 G A SRCIN1 Silent p.F860F 0.35 TCGA-EE-A3AC-06 17 37118295 37118295 C T FBXO47 Missense_Mutation p.D63N 0.21 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3AC-06 17 37118296 37118296 C T FBXO47 Silent p.K62K 0.20 TCGA-EE-A3AC-06 17 37224084 37224084 T C PLXDC1 3'UTR 0.50 TCGA-EE-A3AC-06 17 37580045 37580045 G A MED1 Missense_Mutation p.A294V 0.23 tolerated(0.19) possibly_damaging(0.882) TCGA-EE-A3AC-06 17 38183177 38183177 G A MED24 Silent p.F547F 0.11 TCGA-EE-A3AC-06 17 38710965 38710965 G A CCR7 3'UTR 0.53 TCGA-EE-A3AC-06 17 39553173 39553173 G A KRT31 Silent p.F141F 0.26 TCGA-EE-A3AC-06 17 39580102 39580102 G A KRT37 Intron 0.51 TCGA-EE-A3AC-06 17 39643315 39643315 G A KRT36 Silent p.I365I 0.47 TCGA-EE-A3AC-06 17 39644899 39644899 C T KRT36 Silent p.R179R 0.31 TCGA-EE-A3AC-06 17 3977629 3977629 G A ZZEF1 Missense_Mutation p.A1167V 0.63 deleterious(0) benign(0.367) TCGA-EE-A3AC-06 17 39913718 39913718 G A JUP Silent p.S665S 0.29 TCGA-EE-A3AC-06 17 40042418 40042418 G A ACLY Silent p.I673I 0.52 TCGA-EE-A3AC-06 17 40370242 40370242 G T STAT5B Missense_Mutation p.P366T 0.46 tolerated(0.13) benign(0.001) TCGA-EE-A3AC-06 17 40926710 40926710 G A VPS25 Silent p.R82R 0.41 TCGA-EE-A3AC-06 17 41898295 41898295 C T MPP3 Silent p.Q272Q 0.32 TCGA-EE-A3AC-06 17 42288974 42288974 C T UBTF Silent p.Q349Q 0.28 TCGA-EE-A3AC-06 17 43474304 43474304 C T ARHGAP27 Silent p.E302E 0.59 TCGA-EE-A3AC-06 17 47243605 47243605 G A B4GALNT2 Missense_Mutation p.E422K 0.49 tolerated(0.22) probably_damaging(0.932) TCGA-EE-A3AC-06 17 48069074 48069074 G A DLX3 Missense_Mutation p.P224L 0.28 tolerated(0.23) benign(0.006) TCGA-EE-A3AC-06 17 48245370 48245370 G A SGCA Silent p.G125G 0.29 TCGA-EE-A3AC-06 17 48267367 48267367 G A COL1A1 Missense_Mutation p.P852S 0.35 unknown(0) TCGA-EE-A3AC-06 17 48355984 48355984 C T TMEM92 Missense_Mutation p.P55S 0.73 tolerated(0.06) possibly_damaging(0.628) TCGA-EE-A3AC-06 17 48355985 48355985 C T TMEM92 Missense_Mutation p.P55L 0.71 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AC-06 17 48761431 48761431 T G ABCC3 Missense_Mutation p.L1359R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 17 55027331 55027331 G A COIL Silent p.S424S 0.25 TCGA-EE-A3AC-06 17 55950091 55950091 G A CUEDC1 Silent p.F239F 0.32 TCGA-EE-A3AC-06 17 56544271 56544271 G A HSF5 Missense_Mutation p.S332F 0.53 deleterious(0.01) possibly_damaging(0.613) TCGA-EE-A3AC-06 17 56620267 56620267 C T C17orf47 Nonsense_Mutation p.W427* 0.59 TCGA-EE-A3AC-06 17 58234034 58234034 G A CA4 Missense_Mutation p.D76N 0.31 tolerated(0.21) benign(0.406) TCGA-EE-A3AC-06 17 62121333 62121333 A T ERN1 3'UTR 0.25 TCGA-EE-A3AC-06 17 66903943 66903943 G A ABCA8 Missense_Mutation p.S699L 0.54 deleterious(0.02) benign(0.15) TCGA-EE-A3AC-06 17 66936982 66936982 G A ABCA8 Missense_Mutation p.S73F 0.61 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AC-06 17 67075144 67075144 C T ABCA6 Nonsense_Mutation p.W1608* 0.54 TCGA-EE-A3AC-06 17 67110993 67110993 G A ABCA6 Silent p.F564F 0.25 TCGA-EE-A3AC-06 17 6716272 6716272 G A TEKT1 Nonsense_Mutation p.R244* 0.69 TCGA-EE-A3AC-06 17 7227268 7227268 G A NEURL4 Missense_Mutation p.S709F 0.55 tolerated(0.58) possibly_damaging(0.798) TCGA-EE-A3AC-06 17 72350551 72350551 C T KIF19 Silent p.A853A 0.50 TCGA-EE-A3AC-06 17 72469840 72469840 G A CD300A Missense_Mutation p.G69E 0.52 tolerated(1) benign(0.008) TCGA-EE-A3AC-06 17 73279576 73279576 G A SLC25A19 Silent p.A129A 0.55 TCGA-EE-A3AC-06 17 7345189 7345189 C T FGF11 Silent p.L133L 0.62 TCGA-EE-A3AC-06 17 73493269 73493269 C T KIAA0195 Missense_Mutation p.P1133S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 17 73567141 73567141 C T LLGL2 Silent p.F712F 0.27 TCGA-EE-A3AC-06 17 73887135 73887135 C G TRIM65 Missense_Mutation p.V427L 0.29 tolerated(0.11) benign(0.058) TCGA-EE-A3AC-06 17 74714800 74714800 G A JMJD6 Intron 0.63 TCGA-EE-A3AC-06 17 76526587 76526587 G A DNAH17 Missense_Mutation p.S1041F 0.70 benign(0.008) TCGA-EE-A3AC-06 17 77043939 77043939 G A C1QTNF1 Silent p.K205K 0.65 TCGA-EE-A3AC-06 17 78023898 78023898 G A CCDC40 Silent p.Q325Q 0.78 TCGA-EE-A3AC-06 17 78211392 78211392 C T SLC26A11 Silent p.F328F 0.30 TCGA-EE-A3AC-06 17 78931465 78931465 C T RPTOR Missense_Mutation p.L1138F 0.59 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A3AC-06 17 79863007 79863007 G A PCYT2 Silent p.F349F 0.57 TCGA-EE-A3AC-06 17 80040272 80040272 G A FASN Silent p.L1980L 0.33 TCGA-EE-A3AC-06 18 28968850 28968850 C T DSG4 Missense_Mutation p.A129V 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 18 28980906 28980906 A G DSG4 Missense_Mutation p.Q447R 0.43 tolerated(0.49) benign(0.006) TCGA-EE-A3AC-06 18 29122532 29122532 G A DSG2 Missense_Mutation p.R684K 0.46 tolerated(0.86) benign(0.035) TCGA-EE-A3AC-06 18 31324786 31324786 G A ASXL3 Silent p.R1658R 0.39 TCGA-EE-A3AC-06 18 42532080 42532080 C A SETBP1 Missense_Mutation p.D925E 0.34 tolerated(0.15) probably_damaging(0.994) TCGA-EE-A3AC-06 18 43246970 43246970 G A SLC14A2 Missense_Mutation p.R543Q 0.43 tolerated(1) benign(0.002) TCGA-EE-A3AC-06 18 43316460 43316460 A T SLC14A1 Missense_Mutation p.K226N 0.47 deleterious(0.01) benign(0.415) TCGA-EE-A3AC-06 18 44560939 44560939 C T TCEB3B Missense_Mutation p.E233K 0.39 tolerated(0.15) benign(0.067) TCGA-EE-A3AC-06 18 44561339 44561339 G A TCEB3B Silent p.F99F 0.36 TCGA-EE-A3AC-06 18 47488689 47488689 C T MYO5B Missense_Mutation p.D498N 0.39 tolerated(0.4) possibly_damaging(0.537) TCGA-EE-A3AC-06 18 50866115 50866115 C T DCC Missense_Mutation p.H733Y 0.43 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AC-06 18 52262289 52262289 C T DYNAP Silent p.I85I 0.27 TCGA-EE-A3AC-06 18 52895576 52895576 C T TCF4 Silent p.P734P 0.40 TCGA-EE-A3AC-06 18 56203320 56203320 C T ALPK2 Missense_Mutation p.E1367K 0.44 tolerated(0.2) benign(0.063) TCGA-EE-A3AC-06 18 59157688 59157688 A G CDH20 5'UTR 0.72 TCGA-EE-A3AC-06 18 61570430 61570430 G A SERPINB2 Missense_Mutation p.R380K 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AC-06 18 61597398 61597398 G A SERPINB10 Missense_Mutation p.E204K 0.39 tolerated(0.27) probably_damaging(0.971) TCGA-EE-A3AC-06 18 66678171 66678171 G A CCDC102B Missense_Mutation p.E422K 0.50 deleterious(0.04) probably_damaging(0.964) TCGA-EE-A3AC-06 18 6961617 6961617 C T LAMA1 Missense_Mutation p.E2532K 0.23 tolerated(0.59) benign(0.049) TCGA-EE-A3AC-06 18 76754491 76754491 C T SALL3 Missense_Mutation p.P834S 0.44 tolerated(0.1) benign(0.119) TCGA-EE-A3AC-06 18 8784328 8784328 C T SOGA2 Silent p.P406P 0.38 TCGA-EE-A3AC-06 18 9258459 9258459 C T ANKRD12 Missense_Mutation p.P1732S 0.34 deleterious(0) benign(0.259) TCGA-EE-A3AC-06 19 10659628 10659628 C T ATG4D Missense_Mutation p.A295V 0.43 deleterious(0.05) possibly_damaging(0.744) TCGA-EE-A3AC-06 19 1068597 1068597 G A HMHA1 Missense_Mutation p.R108Q 0.43 deleterious(0.02) possibly_damaging(0.578) TCGA-EE-A3AC-06 19 1068598 1068598 G A HMHA1 Silent p.R108R 0.42 TCGA-EE-A3AC-06 19 11462648 11462648 C T CCDC159 Silent p.L163L 0.40 TCGA-EE-A3AC-06 19 11728022 11728022 C T ZNF627 Missense_Mutation p.S235F 0.29 tolerated(0.67) benign(0) TCGA-EE-A3AC-06 19 12637887 12637887 G A ZNF564 Silent p.T345T 0.33 TCGA-EE-A3AC-06 19 13059911 13059911 C T RAD23A Missense_Mutation p.P206L 0.33 tolerated(0.2) benign(0.001) TCGA-EE-A3AC-06 19 13423558 13423558 G A CACNA1A Silent p.S531S 0.32 TCGA-EE-A3AC-06 19 13423559 13423559 G A CACNA1A Missense_Mutation p.S531F 0.33 probably_damaging(0.919) TCGA-EE-A3AC-06 19 13445274 13445274 G A CACNA1A Silent p.N372N 0.36 TCGA-EE-A3AC-06 19 14772823 14772823 G A EMR3 Missense_Mutation p.H103Y 0.36 tolerated(1) benign(0.15) TCGA-EE-A3AC-06 19 15807031 15807031 C T CYP4F12 Missense_Mutation p.P437L 0.42 deleterious(0) possibly_damaging(0.743) TCGA-EE-A3AC-06 19 15918036 15918036 C T OR10H1 Missense_Mutation p.G271E 0.52 tolerated(0.86) possibly_damaging(0.673) TCGA-EE-A3AC-06 19 16641485 16641485 G A CHERP Missense_Mutation p.L263F 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AC-06 19 16965115 16965115 C T SIN3B Intron 0.41 TCGA-EE-A3AC-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.42 tolerated(0.09) benign(0.03) TCGA-EE-A3AC-06 19 17373400 17373400 C T USHBP1 Silent p.L201L 0.29 TCGA-EE-A3AC-06 19 18321666 18321666 C T PDE4C 3'UTR 0.40 TCGA-EE-A3AC-06 19 18542815 18542815 C T SSBP4 Missense_Mutation p.P191S 0.35 tolerated(0.08) benign(0.019) TCGA-EE-A3AC-06 19 18542816 18542816 C T SSBP4 Missense_Mutation p.P191L 0.36 tolerated(0.08) possibly_damaging(0.621) TCGA-EE-A3AC-06 19 19218738 19218738 C T SLC25A42 Missense_Mutation p.S178L 0.38 tolerated(0.65) benign(0.09) TCGA-EE-A3AC-06 19 19329750 19329750 G A NCAN Missense_Mutation p.E34K 0.36 tolerated(0.11) benign(0.003) TCGA-EE-A3AC-06 19 19345817 19345817 C T NCAN Silent p.P1054P 0.36 TCGA-EE-A3AC-06 19 21365636 21365636 C T ZNF431 Missense_Mutation p.P177L 0.34 tolerated(0.06) benign(0.058) TCGA-EE-A3AC-06 19 22155441 22155441 G A ZNF208 Missense_Mutation p.H799Y 0.37 deleterious(0.05) unknown(0) TCGA-EE-A3AC-06 19 22364100 22364100 C A ZNF676 Missense_Mutation p.G140V 0.27 tolerated(0.08) benign(0.006) TCGA-EE-A3AC-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.33 tolerated(0.44) benign(0.023) TCGA-EE-A3AC-06 19 23405281 23405281 G A ZNF724P Missense_Mutation p.P589L 0.36 tolerated(0.1) possibly_damaging(0.548) TCGA-EE-A3AC-06 19 2853499 2853499 C T ZNF555 Missense_Mutation p.S479F 0.35 deleterious(0) possibly_damaging(0.483) TCGA-EE-A3AC-06 19 287697 287697 C T PPAP2C Missense_Mutation p.D108N 0.33 tolerated(0.5) benign(0.008) TCGA-EE-A3AC-06 19 3207467 3207467 G A NCLN Silent p.Q544Q 0.42 TCGA-EE-A3AC-06 19 32973073 32973073 C T DPY19L3 Missense_Mutation p.P693L 0.34 tolerated(0.06) benign(0.034) TCGA-EE-A3AC-06 19 34884842 34884842 C T GPI Silent p.P322P 0.33 TCGA-EE-A3AC-06 19 34884843 34884843 C T GPI Silent p.L323L 0.34 TCGA-EE-A3AC-06 19 35232615 35232615 C T ZNF181 Silent p.N443N 0.24 TCGA-EE-A3AC-06 19 36218862 36218862 C T KMT2B Silent p.G1491G 0.78 TCGA-EE-A3AC-06 19 36278120 36278120 C T ARHGAP33 Missense_Mutation p.P724S 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A3AC-06 19 36303125 36303125 G A PRODH2 Silent p.L217L 0.55 TCGA-EE-A3AC-06 19 38949920 38949920 G A RYR1 Missense_Mutation p.E768K 0.30 probably_damaging(0.988) TCGA-EE-A3AC-06 19 38997535 38997535 G A RYR1 Missense_Mutation p.R2920Q 0.59 benign(0.196) TCGA-EE-A3AC-06 19 40419872 40419872 C T FCGBP Missense_Mutation p.G1041E 0.39 possibly_damaging(0.742) TCGA-EE-A3AC-06 19 40419873 40419873 C T FCGBP Missense_Mutation p.G1041R 0.38 probably_damaging(0.986) TCGA-EE-A3AC-06 19 42354564 42354564 C T DMRTC2 Intron 0.46 TCGA-EE-A3AC-06 19 42525574 42525574 G A GRIK5 Missense_Mutation p.H584Y 0.39 deleterious(0) possibly_damaging(0.456) TCGA-EE-A3AC-06 19 4292617 4292617 G A TMIGD2 Silent p.F276F 0.28 TCGA-EE-A3AC-06 19 43372188 43372188 C T PSG1 3'UTR 0.38 TCGA-EE-A3AC-06 19 43585352 43585352 C T PSG2 Silent p.T37T 0.24 TCGA-EE-A3AC-06 19 4363800 4363800 C T SH3GL1 Missense_Mutation p.E181K 0.43 deleterious(0.03) benign(0.167) TCGA-EE-A3AC-06 19 43687615 43687615 G A PSG5 Intron 0.38 TCGA-EE-A3AC-06 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.33 tolerated(0.29) possibly_damaging(0.621) TCGA-EE-A3AC-06 19 43773679 43773679 C T PSG9 5'UTR 0.31 TCGA-EE-A3AC-06 19 44417609 44417609 C T ZNF45 Missense_Mutation p.R660Q 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A3AC-06 19 44933997 44933997 G A ZNF229 Missense_Mutation p.S320F 0.35 tolerated(0.71) possibly_damaging(0.548) TCGA-EE-A3AC-06 19 45026929 45026929 G A CEACAM20 RNA 0.40 TCGA-EE-A3AC-06 19 45150799 45150799 C T PVR Silent p.F128F 0.41 TCGA-EE-A3AC-06 19 45885952 45885952 C T PPP1R13L Missense_Mutation p.G761R 0.33 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AC-06 19 47232010 47232010 C T STRN4 Missense_Mutation p.E302K 0.38 tolerated(0.45) probably_damaging(0.992) TCGA-EE-A3AC-06 19 47589699 47589713 CCTCTGCCCCTGCCT - ZC3H4 In_Frame_Del p.G267_G271del 0.37 TCGA-EE-A3AC-06 19 47653513 47653513 C T SAE1 Nonsense_Mutation p.R89* 0.41 TCGA-EE-A3AC-06 19 51022446 51022446 G A LRRC4B Missense_Mutation p.S175F 0.45 deleterious(0) probably_damaging(0.925) TCGA-EE-A3AC-06 19 51132596 51132596 C T SYT3 Silent p.Q412Q 0.22 TCGA-EE-A3AC-06 19 51140539 51140539 G A SYT3 Missense_Mutation p.P44S 0.39 tolerated(0.07) benign(0.011) TCGA-EE-A3AC-06 19 51363469 51363469 C T KLK3 3'UTR 0.36 TCGA-EE-A3AC-06 19 51412575 51412575 C T KLK4 Missense_Mutation p.E53K 0.38 tolerated(0.5) benign(0.049) TCGA-EE-A3AC-06 19 51559793 51559793 C T KLK13 3'Flank 0.46 TCGA-EE-A3AC-06 19 51883763 51883763 G A LIM2 Silent p.F194F 0.34 TCGA-EE-A3AC-06 19 53058004 53058004 C T ZNF808 Missense_Mutation p.S612L 0.37 tolerated(0.8) benign(0.257) TCGA-EE-A3AC-06 19 55045054 55045054 G A KIR3DX1 Nonsense_Mutation p.W58* 0.24 TCGA-EE-A3AC-06 19 55221525 55221525 C T AC098784.2 3'Flank 0.48 TCGA-EE-A3AC-06 19 55399441 55399441 C T FCAR Silent p.S143S 0.30 TCGA-EE-A3AC-06 19 55447723 55447723 G A NLRP7 Silent p.L736L 0.32 TCGA-EE-A3AC-06 19 55913070 55913070 G A UBE2S Missense_Mutation p.R135C 0.35 deleterious(0.05) probably_damaging(0.946) TCGA-EE-A3AC-06 19 55913071 55913071 G T UBE2S Silent p.G134G 0.34 TCGA-EE-A3AC-06 19 56244125 56244125 C T NLRP9 Missense_Mutation p.E358K 0.38 tolerated(0.72) benign(0.164) TCGA-EE-A3AC-06 19 56423734 56423734 G A NLRP13 Silent p.L483L 0.42 TCGA-EE-A3AC-06 19 56424493 56424493 C T NLRP13 Silent p.T230T 0.41 TCGA-EE-A3AC-06 19 56935483 56935483 C T ZNF583 Missense_Mutation p.H486Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AC-06 19 57059204 57059204 C T ZFP28 Silent p.I152I 0.35 TCGA-EE-A3AC-06 19 57329130 57329130 G A PEG3 Silent p.Y282Y 0.40 TCGA-EE-A3AC-06 19 5739416 5739416 G A CATSPERD Missense_Mutation p.G180E 0.39 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AC-06 19 57642498 57642498 C T USP29 Missense_Mutation p.P819S 0.30 tolerated(0.45) possibly_damaging(0.815) TCGA-EE-A3AC-06 19 5866520 5866520 C T FUT5 3'UTR 0.39 TCGA-EE-A3AC-06 19 59010878 59010878 G A SLC27A5 Missense_Mutation p.R550C 0.46 deleterious(0.02) possibly_damaging(0.565) TCGA-EE-A3AC-06 19 6151757 6151757 T C ACSBG2 Missense_Mutation p.F113L 0.41 deleterious(0) possibly_damaging(0.622) TCGA-EE-A3AC-06 19 6374579 6374579 C T ALKBH7 Missense_Mutation p.P161L 0.26 tolerated(0.1) probably_damaging(0.955) TCGA-EE-A3AC-06 19 6821869 6821869 G A VAV1 Missense_Mutation p.D150N 0.38 deleterious(0.02) possibly_damaging(0.626) TCGA-EE-A3AC-06 19 6825388 6825388 C T VAV1 Silent p.L266L 0.44 TCGA-EE-A3AC-06 19 757331 757331 G A MISP Missense_Mutation p.G129R 0.60 tolerated(0.89) benign(0.002) TCGA-EE-A3AC-06 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.76 tolerated(0.13) benign(0.153) TCGA-EE-A3AC-06 19 8974042 8974042 T C MUC16 Missense_Mutation p.N14210S 0.27 probably_damaging(0.928) TCGA-EE-A3AC-06 19 9048603 9048603 G A MUC16 Missense_Mutation p.P11010S 0.31 benign(0) TCGA-EE-A3AC-06 19 9064305 9064305 G A MUC16 Missense_Mutation p.P7714L 0.43 unknown(0) TCGA-EE-A3AC-06 19 9077737 9077737 G A MUC16 Missense_Mutation p.P3237S 0.33 unknown(0) TCGA-EE-A3AC-06 19 9083313 9083313 C T MUC16 Silent p.T2834T 0.43 TCGA-EE-A3AC-06 19 9084257 9084257 G A MUC16 Missense_Mutation p.L2520F 0.50 unknown(0) TCGA-EE-A3AC-06 19 9087450 9087450 G T MUC16 Silent p.L1455L 0.48 TCGA-EE-A3AC-06 19 9090722 9090722 G A MUC16 Missense_Mutation p.L365F 0.41 unknown(0) TCGA-EE-A3AC-06 19 9090772 9090772 G A MUC16 Missense_Mutation p.S348F 0.33 unknown(0) TCGA-EE-A3AC-06 1 100154993 100154993 G A PALMD Missense_Mutation p.E393K 0.39 tolerated(0.05) benign(0.059) TCGA-EE-A3AC-06 1 10383972 10383972 A G KIF1B Missense_Mutation p.T751A 0.36 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AC-06 1 109242746 109242746 C T PRPF38B 3'UTR 0.33 TCGA-EE-A3AC-06 1 110255865 110255865 C T GSTM5 Intron 0.48 TCGA-EE-A3AC-06 1 110604186 110604186 C T ALX3 Splice_Site p.X199_splice 0.21 TCGA-EE-A3AC-06 1 111146504 111146504 C T KCNA2 Missense_Mutation p.V301I 0.36 deleterious(0.03) probably_damaging(0.917) TCGA-EE-A3AC-06 1 114184796 114184796 G A MAGI3 Missense_Mutation p.G542R 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3AC-06 1 115222253 115222253 C T AMPD1 Missense_Mutation p.E315K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.36 deleterious(0.01) benign(0.045) TCGA-EE-A3AC-06 1 118523897 118523897 A T SPAG17 Silent p.P2000P 0.47 TCGA-EE-A3AC-06 1 119427567 119427567 C T TBX15 Missense_Mutation p.E427K 0.35 deleterious(0.03) benign(0.437) TCGA-EE-A3AC-06 1 119962127 119962127 G A HSD3B2 Missense_Mutation p.V77I 0.35 tolerated(0.09) possibly_damaging(0.803) TCGA-EE-A3AC-06 1 120166578 120166578 C T ZNF697 Missense_Mutation p.E130K 0.64 tolerated(0.1) benign(0.101) TCGA-EE-A3AC-06 1 1236057 1236057 G A ACAP3 Silent p.F118F 0.37 TCGA-EE-A3AC-06 1 12409243 12409243 C T VPS13D Silent p.I3081I 0.30 TCGA-EE-A3AC-06 1 12907288 12907288 G A HNRNPCL1 Silent p.D285D 0.25 TCGA-EE-A3AC-06 1 12907921 12907921 C T HNRNPCL1 Missense_Mutation p.M74I 0.13 tolerated(0.38) benign(0.009) TCGA-EE-A3AC-06 1 12939710 12939710 G A PRAMEF4 Silent p.I364I 0.40 TCGA-EE-A3AC-06 1 144874762 144874762 C T PDE4DIP Missense_Mutation p.E1616K 0.15 tolerated(0.09) possibly_damaging(0.602) TCGA-EE-A3AC-06 1 145415781 145415781 T C HFE2 Silent p.F200F 0.23 TCGA-EE-A3AC-06 1 151378521 151378521 C A POGZ Missense_Mutation p.R997L 0.30 deleterious(0.04) possibly_damaging(0.522) TCGA-EE-A3AC-06 1 152187528 152187528 C T HRNR Missense_Mutation p.G2193R 0.09 unknown(0) TCGA-EE-A3AC-06 1 152192059 152192059 G A HRNR Silent p.S682S 0.58 TCGA-EE-A3AC-06 1 152192060 152192060 G A HRNR Missense_Mutation p.S682F 0.57 unknown(0) TCGA-EE-A3AC-06 1 152777969 152777969 C T LCE1C 5'UTR 0.24 TCGA-EE-A3AC-06 1 152975906 152975906 G A SPRR3 Missense_Mutation p.G137E 0.42 tolerated(0.1) possibly_damaging(0.782) TCGA-EE-A3AC-06 1 153122339 153122339 C T SPRR2G 3'UTR 0.30 TCGA-EE-A3AC-06 1 153330863 153330863 G A S100A9 Missense_Mutation p.G35E 0.34 tolerated(0.21) benign(0.035) TCGA-EE-A3AC-06 1 154072489 154072489 A C NUP210L Silent p.A650A 0.50 TCGA-EE-A3AC-06 1 154076511 154076511 C T NUP210L Missense_Mutation p.G599E 0.21 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A3AC-06 1 156351984 156351984 C T RHBG Silent p.Y368Y 0.26 TCGA-EE-A3AC-06 1 156834185 156834185 C T NTRK1 Silent p.L84L 0.24 TCGA-EE-A3AC-06 1 156905774 156905774 A T ARHGEF11 3'UTR 0.28 TCGA-EE-A3AC-06 1 15752394 15752394 C T EFHD2 Silent p.I112I 0.40 TCGA-EE-A3AC-06 1 157738389 157738389 C T FCRL2 Missense_Mutation p.G233E 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AC-06 1 158449901 158449901 A G OR10R2 Silent p.P78P 0.44 TCGA-EE-A3AC-06 1 158517164 158517164 G A OR6Y1 Silent p.S244S 0.34 TCGA-EE-A3AC-06 1 158576808 158576808 C T OR10Z1 Missense_Mutation p.P194S 0.30 tolerated(0.28) benign(0.001) TCGA-EE-A3AC-06 1 158669861 158669861 G A OR6K2 Silent p.I194I 0.26 TCGA-EE-A3AC-06 1 160265560 160265560 G A COPA Silent p.S823S 0.26 TCGA-EE-A3AC-06 1 160654578 160654578 C T CD48 Intron 0.33 TCGA-EE-A3AC-06 1 160914959 160914959 C T ITLN2 Missense_Mutation p.E317K 0.26 deleterious(0.02) possibly_damaging(0.877) TCGA-EE-A3AC-06 1 161275677 161275677 C T MPZ Missense_Mutation p.D246N 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A3AC-06 1 161594284 161594284 C T FCGR3B 3'UTR 0.16 TCGA-EE-A3AC-06 1 161993142 161993142 C T OLFML2B Missense_Mutation p.G27R 0.57 tolerated(0.06) benign(0.01) TCGA-EE-A3AC-06 1 162353118 162353118 C T C1orf226 Missense_Mutation p.S198L 0.33 tolerated(0.31) benign(0.009) TCGA-EE-A3AC-06 1 16458928 16458928 G A EPHA2 Missense_Mutation p.P687L 0.33 tolerated(0.14) possibly_damaging(0.585) TCGA-EE-A3AC-06 1 165652297 165652297 G A ALDH9A1 Silent p.S126S 0.62 TCGA-EE-A3AC-06 1 166891849 166891849 G A ILDR2 Nonsense_Mutation p.R398* 0.24 TCGA-EE-A3AC-06 1 167023580 167023580 G A GPA33 Silent p.L317L 0.25 TCGA-EE-A3AC-06 1 167817666 167817666 A C ADCY10 Missense_Mutation p.S790R 0.28 tolerated(0.46) benign(0.002) TCGA-EE-A3AC-06 1 167889261 167889261 G A MPC2 Silent p.F101F 0.28 TCGA-EE-A3AC-06 1 169578856 169578856 G A SELP Nonsense_Mutation p.Q407* 0.29 TCGA-EE-A3AC-06 1 169677719 169677719 T C SELL Missense_Mutation p.N117S 0.17 deleterious(0.04) possibly_damaging(0.772) TCGA-EE-A3AC-06 1 169696892 169696892 G A SELE Missense_Mutation p.P486S 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AC-06 1 170931075 170931075 G A MROH9 Silent p.T111T 0.28 TCGA-EE-A3AC-06 1 172501615 172501615 G A SUCO 5'Flank 0.28 TCGA-EE-A3AC-06 1 172634869 172634869 G A FASLG Missense_Mutation p.G187R 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 17272860 17272860 T C CROCC Missense_Mutation p.L748P 0.28 probably_damaging(1) TCGA-EE-A3AC-06 1 173579217 173579217 C T ANKRD45 3'UTR 0.31 TCGA-EE-A3AC-06 1 173594003 173594003 G A ANKRD45 Missense_Mutation p.S218F 0.23 deleterious(0) benign(0.256) TCGA-EE-A3AC-06 1 173949997 173949997 G A RC3H1 Missense_Mutation p.L307F 0.33 deleterious(0) possibly_damaging(0.642) TCGA-EE-A3AC-06 1 174418005 174418005 C T GPR52 Silent p.S252S 0.29 TCGA-EE-A3AC-06 1 174987584 174987584 C T MRPS14 Silent p.R58R 0.31 TCGA-EE-A3AC-06 1 17690064 17690064 C T PADI4 Silent p.F602F 0.37 TCGA-EE-A3AC-06 1 177199273 177199273 G A BRINP2 Silent p.R87R 0.25 TCGA-EE-A3AC-06 1 177245527 177245527 C T BRINP2 Silent p.I323I 0.18 TCGA-EE-A3AC-06 1 177906553 177906553 G A SEC16B Silent p.L767L 0.20 TCGA-EE-A3AC-06 1 177911075 177911075 C T SEC16B Missense_Mutation p.G661E 0.21 tolerated(0.46) benign(0.098) TCGA-EE-A3AC-06 1 179564890 179564890 A T TDRD5 Missense_Mutation p.E256D 0.24 tolerated(0.36) benign(0.004) TCGA-EE-A3AC-06 1 18152938 18152938 C T ACTL8 Missense_Mutation p.S342F 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 181687222 181687222 C T CACNA1E Silent p.F519F 0.23 TCGA-EE-A3AC-06 1 181721289 181721289 G A CACNA1E Missense_Mutation p.G1248R 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 1 181725113 181725113 G A CACNA1E Silent p.E1337E 0.19 TCGA-EE-A3AC-06 1 181767462 181767462 C T CACNA1E Missense_Mutation p.S2145F 0.26 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A3AC-06 1 183111717 183111717 C T LAMC1 Missense_Mutation p.T1541I 0.27 tolerated(0.11) benign(0.194) TCGA-EE-A3AC-06 1 184677385 184677385 G A EDEM3 Missense_Mutation p.P647S 0.31 deleterious(0.05) benign(0.334) TCGA-EE-A3AC-06 1 190424010 190424010 C T BRINP3 Missense_Mutation p.R4Q 0.67 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A3AC-06 1 19204015 19204015 A C ALDH4A1 Silent p.G344G 0.20 TCGA-EE-A3AC-06 1 19630880 19630880 C T AKR7A2 Missense_Mutation p.G307S 0.33 tolerated(0.09) possibly_damaging(0.625) TCGA-EE-A3AC-06 1 196801090 196801090 G A CFHR1 Nonsense_Mutation p.W318* 0.26 TCGA-EE-A3AC-06 1 197071094 197071094 G A ASPM Silent p.S2429S 0.31 TCGA-EE-A3AC-06 1 197404099 197404099 G A CRB1 Missense_Mutation p.E1036K 0.33 tolerated(0.14) benign(0.002) TCGA-EE-A3AC-06 1 197404165 197404165 G A CRB1 Missense_Mutation p.E1058K 0.25 tolerated(0.7) benign(0.011) TCGA-EE-A3AC-06 1 197614842 197614842 C T DENND1B Missense_Mutation p.G180E 0.35 tolerated(1) probably_damaging(0.982) TCGA-EE-A3AC-06 1 200559285 200559285 C T KIF14 Missense_Mutation p.E977K 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 203678659 203678659 C T ATP2B4 Silent p.I596I 0.49 TCGA-EE-A3AC-06 1 204394120 204394120 G A PIK3C2B Nonsense_Mutation p.Q1589* 0.29 TCGA-EE-A3AC-06 1 204426965 204426965 G A PIK3C2B Missense_Mutation p.S535F 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AC-06 1 205499304 205499304 C T CDK18 Intron 0.35 TCGA-EE-A3AC-06 1 205883930 205883930 G A SLC26A9 3'UTR 0.25 TCGA-EE-A3AC-06 1 206730818 206730818 G A RASSF5 Intron 0.29 TCGA-EE-A3AC-06 1 207013243 207013243 G A IL19 Missense_Mutation p.D125N 0.60 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A3AC-06 1 207262864 207262864 C T C4BPB 5'UTR 0.30 TCGA-EE-A3AC-06 1 207287488 207287488 G A C4BPA Missense_Mutation p.M62I 0.26 tolerated(1) benign(0) TCGA-EE-A3AC-06 1 209796339 209796339 C T LAMB3 Silent p.R848R 0.26 TCGA-EE-A3AC-06 1 215808037 215808037 G A USH2A Silent p.L5021L 0.27 TCGA-EE-A3AC-06 1 216424377 216424377 C T USH2A Missense_Mutation p.G679R 0.38 probably_damaging(1) TCGA-EE-A3AC-06 1 217915317 217915317 G A SPATA17 Silent p.R132R 0.23 TCGA-EE-A3AC-06 1 220379279 220379279 G A RAB3GAP2 Missense_Mutation p.L228F 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 1 22173080 22173080 G A HSPG2 Missense_Mutation p.S2726F 0.31 benign(0.304) TCGA-EE-A3AC-06 1 223176378 223176378 C T DISP1 Missense_Mutation p.R547C 0.27 deleterious(0) probably_damaging(0.978) TCGA-EE-A3AC-06 1 225702311 225702311 C T ENAH Missense_Mutation p.R402K 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A3AC-06 1 226421046 226421046 T C LIN9 Missense_Mutation p.K491R 0.52 tolerated(0.32) benign(0.082) TCGA-EE-A3AC-06 1 228246896 228246896 C T WNT3A Silent p.F263F 0.21 TCGA-EE-A3AC-06 1 228486336 228486336 C T OBSCN Silent p.I4376I 0.37 TCGA-EE-A3AC-06 1 228505743 228505743 G A OBSCN Missense_Mutation p.G5624E 0.27 benign(0.24) TCGA-EE-A3AC-06 1 228565642 228565642 C T OBSCN Silent p.L8793L 0.22 TCGA-EE-A3AC-06 1 230338945 230338945 G A GALNT2 Missense_Mutation p.G95R 0.24 deleterious(0) probably_damaging(0.97) TCGA-EE-A3AC-06 1 230338946 230338946 G A GALNT2 Missense_Mutation p.G95E 0.23 deleterious(0) probably_damaging(0.941) TCGA-EE-A3AC-06 1 233482261 233482261 G A MLK4 Silent p.A293A 0.32 TCGA-EE-A3AC-06 1 234455867 234455867 G A SLC35F3 Missense_Mutation p.G391R 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 234565323 234565323 G A TARBP1 Missense_Mutation p.H904Y 0.32 tolerated(0.23) benign(0.002) TCGA-EE-A3AC-06 1 236706240 236706240 C T LGALS8 Missense_Mutation p.S192F 0.31 tolerated(0.1) benign(0.001) TCGA-EE-A3AC-06 1 237969530 237969530 G A RYR2 Missense_Mutation p.G4749R 0.22 probably_damaging(0.995) TCGA-EE-A3AC-06 1 237982410 237982410 A T RYR2 Silent p.G4836G 0.30 TCGA-EE-A3AC-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.20 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AC-06 1 24383875 24383875 G A MYOM3 Silent p.P1431P 0.47 TCGA-EE-A3AC-06 1 24383876 24383876 G A MYOM3 Missense_Mutation p.P1431L 0.44 tolerated(0.49) benign(0.049) TCGA-EE-A3AC-06 1 247587996 247587996 C T NLRP3 Silent p.I417I 0.24 TCGA-EE-A3AC-06 1 247607377 247607377 G A NLRP3 Missense_Mutation p.G925R 0.31 tolerated(0.11) benign(0.269) TCGA-EE-A3AC-06 1 247769751 247769751 C T OR2G3 Silent p.I288I 0.23 TCGA-EE-A3AC-06 1 247902770 247902770 C T OR14K1 Missense_Mutation p.P285L 0.22 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AC-06 1 248084319 248084319 C T OR2T8 5'Flank 0.25 TCGA-EE-A3AC-06 1 248112855 248112855 G A OR2L8 Silent p.G232G 0.26 TCGA-EE-A3AC-06 1 248129595 248129595 G A OR2AK2 Missense_Mutation p.G321E 0.26 deleterious(0.02) possibly_damaging(0.743) TCGA-EE-A3AC-06 1 248366844 248366844 G A OR2M3 Missense_Mutation p.D159N 0.27 tolerated(0.33) benign(0.028) TCGA-EE-A3AC-06 1 248458548 248458548 G A OR2T12 Silent p.F111F 0.46 TCGA-EE-A3AC-06 1 248525769 248525769 C G OR2T4 Missense_Mutation p.S296C 0.54 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AC-06 1 248570329 248570329 A C OR2T1 Missense_Mutation p.K345T 0.49 deleterious(0.01) benign(0.033) TCGA-EE-A3AC-06 1 248813307 248813307 C T OR2T27 Silent p.R293R 0.28 TCGA-EE-A3AC-06 1 2524135 2524135 C T MMEL1 Missense_Mutation p.E676K 0.41 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AC-06 1 2524136 2524136 C T MMEL1 Silent p.G675G 0.34 TCGA-EE-A3AC-06 1 26526533 26526533 G A CATSPER4 Missense_Mutation p.R324Q 0.47 tolerated(1) benign(0.002) TCGA-EE-A3AC-06 1 26695056 26695056 C T ZNF683 Missense_Mutation p.E3K 0.36 tolerated_low_confidence(0.06) benign(0.033) TCGA-EE-A3AC-06 1 27057884 27057884 C T ARID1A Missense_Mutation p.P531L 0.35 benign(0.001) TCGA-EE-A3AC-06 1 27107264 27107264 C T ARID1A 3'UTR 0.44 TCGA-EE-A3AC-06 1 27238246 27238246 C T NR0B2 3'UTR 0.27 TCGA-EE-A3AC-06 1 28537130 28537130 G A DNAJC8 Missense_Mutation p.P86S 0.40 deleterious(0.03) benign(0.229) TCGA-EE-A3AC-06 1 29618476 29618476 C T PTPRU Missense_Mutation p.T815I 0.29 deleterious(0.03) benign(0.236) TCGA-EE-A3AC-06 1 31425183 31425183 G A PUM1 Silent p.A873A 0.36 TCGA-EE-A3AC-06 1 31425184 31425184 G A PUM1 Missense_Mutation p.A873V 0.35 deleterious(0) benign(0.109) TCGA-EE-A3AC-06 1 32842272 32842272 G A BSDC1 Silent p.F266F 0.44 TCGA-EE-A3AC-06 1 3350377 3350377 G A PRDM16 3'UTR 0.25 TCGA-EE-A3AC-06 1 33764608 33764608 G A ZNF362 Silent p.T408T 0.50 TCGA-EE-A3AC-06 1 34080129 34080129 C T CSMD2 Nonsense_Mutation p.W1996* 0.39 TCGA-EE-A3AC-06 1 34286138 34286138 G A CSMD2 Silent p.S337S 0.44 TCGA-EE-A3AC-06 1 36181741 36181741 G A C1orf216 Missense_Mutation p.S61F 0.49 tolerated(0.08) benign(0.01) TCGA-EE-A3AC-06 1 36859314 36859314 G A LSM10 3'UTR 0.48 TCGA-EE-A3AC-06 1 37270649 37270649 G A GRIK3 Missense_Mutation p.S835F 0.37 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AC-06 1 37947358 37947358 G C ZC3H12A Missense_Mutation p.R247P 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 1 38187513 38187513 C T EPHA10 Silent p.R655R 0.25 TCGA-EE-A3AC-06 1 39934333 39934333 C T MACF1 Missense_Mutation p.T5208I 0.34 possibly_damaging(0.569) TCGA-EE-A3AC-06 1 40131882 40131882 G A NT5C1A Silent p.I54I 0.26 TCGA-EE-A3AC-06 1 40434365 40434365 C T MFSD2A Missense_Mutation p.P506S 0.43 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AC-06 1 42657072 42657072 G A FOXJ3 Missense_Mutation p.P418L 0.40 deleterious(0.04) benign(0.004) TCGA-EE-A3AC-06 1 43770717 43770717 C T TIE1 Missense_Mutation p.S85L 0.42 deleterious(0.01) benign(0.116) TCGA-EE-A3AC-06 1 44467191 44467191 G A SLC6A9 Silent p.S430S 0.34 TCGA-EE-A3AC-06 1 45524428 45524428 G A ZSWIM5 Nonsense_Mutation p.R369* 0.39 TCGA-EE-A3AC-06 1 47101436 47101436 A G ATPAF1 3'UTR 0.42 TCGA-EE-A3AC-06 1 47276781 47276781 C T CYP4B1 Intron 0.38 TCGA-EE-A3AC-06 1 47283637 47283637 G A CYP4B1 Missense_Mutation p.G403E 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AC-06 1 47402415 47402415 C T CYP4A11 Missense_Mutation p.R144Q 0.32 tolerated(0.08) benign(0.327) TCGA-EE-A3AC-06 1 52299747 52299747 C T NRD1 Missense_Mutation p.E338K 0.43 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AC-06 1 53535657 53535657 G A PODN Missense_Mutation p.E92K 0.25 deleterious_low_confidence(0.02) benign(0.173) TCGA-EE-A3AC-06 1 53676142 53676142 C T CPT2 Missense_Mutation p.P266S 0.32 deleterious(0.01) possibly_damaging(0.643) TCGA-EE-A3AC-06 1 53676143 53676143 C T CPT2 Missense_Mutation p.P266L 0.32 deleterious(0) possibly_damaging(0.882) TCGA-EE-A3AC-06 1 55188376 55188376 C T TTC4 Silent p.H166H 0.43 TCGA-EE-A3AC-06 1 55457526 55457526 A G TMEM61 Missense_Mutation p.D128G 0.35 tolerated(0.06) benign(0.01) TCGA-EE-A3AC-06 1 65099822 65099822 G A CACHD1 Silent p.R244R 0.48 TCGA-EE-A3AC-06 1 6693007 6693008 AG - THAP3 Frame_Shift_Del p.K197Rfs*3 0.29 TCGA-EE-A3AC-06 1 67838131 67838131 C T IL12RB2 Missense_Mutation p.S491F 0.32 deleterious(0) benign(0.279) TCGA-EE-A3AC-06 1 74507258 74507258 C T LRRIQ3 Missense_Mutation p.V453I 0.39 tolerated(0.34) benign(0.004) TCGA-EE-A3AC-06 1 7700579 7700579 G A CAMTA1 Silent p.T210T 0.46 TCGA-EE-A3AC-06 1 7723500 7723500 G A CAMTA1 Missense_Mutation p.G298E 0.46 deleterious(0.02) possibly_damaging(0.548) TCGA-EE-A3AC-06 1 7861197 7861197 G A PER3 Missense_Mutation p.R272K 0.40 deleterious(0) benign(0.364) TCGA-EE-A3AC-06 1 82409110 82409110 G A LPHN2 Missense_Mutation p.M285I 0.44 deleterious(0) benign(0.409) TCGA-EE-A3AC-06 1 84880389 84880389 G A DNASE2B Nonsense_Mutation p.W308* 0.51 TCGA-EE-A3AC-06 1 883570 883570 G A NOC2L Silent p.L534L 0.36 TCGA-EE-A3AC-06 1 883571 883571 G A NOC2L Silent p.Y533Y 0.36 TCGA-EE-A3AC-06 1 89851024 89851024 T C GBP6 Missense_Mutation p.F633S 0.33 deleterious_low_confidence(0.02) benign(0.099) TCGA-EE-A3AC-06 1 9073680 9073680 C T SLC2A7 Silent p.A306A 0.46 TCGA-EE-A3AC-06 1 9101924 9101924 A C SLC2A5 Missense_Mutation p.V164G 0.40 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AC-06 1 92459696 92459696 C T BRDT Silent p.T724T 0.32 TCGA-EE-A3AC-06 1 92979177 92979177 C T EVI5 3'UTR 0.38 TCGA-EE-A3AC-06 1 9324773 9324773 A T H6PD Nonsense_Mutation p.K741* 0.35 TCGA-EE-A3AC-06 1 94574255 94574255 C T ABCA4 Missense_Mutation p.R107Q 0.39 tolerated(0.41) benign(0.004) TCGA-EE-A3AC-06 20 16721490 16721490 G A SNRPB2 Splice_Site p.X173_splice 0.42 TCGA-EE-A3AC-06 20 16730542 16730542 A C OTOR Intron 0.39 TCGA-EE-A3AC-06 20 18507066 18507066 C T SEC23B Missense_Mutation p.P295L 0.42 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AC-06 20 19998633 19998633 A T NAA20 Intron 0.27 TCGA-EE-A3AC-06 20 20037439 20037439 C T C20orf26 Silent p.L48L 0.36 TCGA-EE-A3AC-06 20 23028577 23028577 G A THBD Missense_Mutation p.S522F 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A3AC-06 20 23966593 23966593 G A GGTLC1 Missense_Mutation p.S108F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 20 2442398 2442398 G A SNRPB 3'UTR 0.37 TCGA-EE-A3AC-06 20 30527068 30527068 C T TTLL9 Silent p.L414L 0.66 TCGA-EE-A3AC-06 20 30617631 30617631 C T CCM2L 3'UTR 0.63 TCGA-EE-A3AC-06 20 30822425 30822425 C T POFUT1 Silent p.F376F 0.21 TCGA-EE-A3AC-06 20 33329375 33329375 G A NCOA6 Missense_Mutation p.P1562L 0.70 benign(0.004) TCGA-EE-A3AC-06 20 33592285 33592285 G A TRPC4AP Silent p.I675I 0.16 TCGA-EE-A3AC-06 20 34242629 34242629 G A RBM12 Missense_Mutation p.P206S 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-EE-A3AC-06 20 34778246 34778246 G A EPB41L1 Silent p.R358R 0.62 TCGA-EE-A3AC-06 20 35060740 35060740 C T DLGAP4 Missense_Mutation p.S207F 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 20 35060741 35060741 C T DLGAP4 Silent p.S207S 0.66 TCGA-EE-A3AC-06 20 37062539 37062539 G A SNORA71D RNA 0.69 TCGA-EE-A3AC-06 20 3726646 3726646 G A HSPA12B Missense_Mutation p.A215T 0.42 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AC-06 20 39977295 39977295 C T LPIN3 Missense_Mutation p.P109S 0.56 tolerated(0.17) possibly_damaging(0.823) TCGA-EE-A3AC-06 20 40727103 40727103 G A PTPRT Silent p.N1268N 0.71 TCGA-EE-A3AC-06 20 40980811 40980811 C T PTPRT Missense_Mutation p.G559R 0.69 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AC-06 20 40980866 40980866 C T PTPRT Silent p.G540G 0.63 TCGA-EE-A3AC-06 20 44485898 44485898 G A ACOT8 Silent p.P19P 0.61 TCGA-EE-A3AC-06 20 44986401 44986401 G A SLC35C2 Silent p.F44F 0.74 TCGA-EE-A3AC-06 20 45315533 45315533 G A TP53RK Silent p.F207F 0.24 TCGA-EE-A3AC-06 20 4764835 4764835 C T RASSF2 3'UTR 0.33 TCGA-EE-A3AC-06 20 5154287 5154287 T G CDS2 Missense_Mutation p.L59R 0.40 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AC-06 20 51870638 51870638 G A TSHZ2 Missense_Mutation p.R214K 0.19 tolerated(1) probably_damaging(0.996) TCGA-EE-A3AC-06 20 55803385 55803385 C T BMP7 Missense_Mutation p.A171T 0.64 deleterious(0.01) possibly_damaging(0.529) TCGA-EE-A3AC-06 20 57829230 57829230 C T ZNF831 Missense_Mutation p.S1489F 0.20 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3AC-06 20 57876604 57876604 G A EDN3 Silent p.G64G 0.75 TCGA-EE-A3AC-06 20 5932719 5932719 A G MCM8 Missense_Mutation p.R20G 0.09 deleterious_low_confidence(0.02) benign(0.081) TCGA-EE-A3AC-06 20 60888496 60888496 G A LAMA5 Silent p.F2893F 0.09 TCGA-EE-A3AC-06 20 60991862 60991862 C T RBBP8NL Silent p.E89E 0.77 TCGA-EE-A3AC-06 20 62038654 62038654 C T KCNQ2 Silent p.E654E 0.20 TCGA-EE-A3AC-06 20 62120348 62120348 G A EEF1A2 Missense_Mutation p.S396F 0.26 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-EE-A3AC-06 20 62175632 62175632 C T SRMS Silent p.G142G 0.73 TCGA-EE-A3AC-06 20 6759677 6759677 G A BMP2 Missense_Mutation p.E378K 0.44 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A3AC-06 20 896675 896675 G A ANGPT4 Silent p.V61V 0.31 TCGA-EE-A3AC-06 20 9525085 9525085 C T PAK7 Silent p.R600R 0.48 TCGA-EE-A3AC-06 21 15538721 15538721 C T LIPI Missense_Mutation p.G253E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 21 34925573 34925573 C T SON Missense_Mutation p.P1346S 0.54 possibly_damaging(0.641) TCGA-EE-A3AC-06 21 35514810 35514810 C T MRPS6 Silent p.H96H 0.36 TCGA-EE-A3AC-06 21 35514811 35514811 C T MRPS6 Missense_Mutation p.P97S 0.36 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A3AC-06 21 37665783 37665783 G A DOPEY2 Missense_Mutation p.D2271N 0.31 tolerated(0.14) benign(0.089) TCGA-EE-A3AC-06 21 39087096 39087096 C T KCNJ6 Missense_Mutation p.D122N 0.36 tolerated(0.33) benign(0.003) TCGA-EE-A3AC-06 21 39817365 39817365 G A ERG Silent p.I73I 0.36 TCGA-EE-A3AC-06 21 41032744 41032744 G A B3GALT5 Silent p.V86V 0.42 TCGA-EE-A3AC-06 21 42080528 42080528 C T DSCAM Silent p.G71G 0.41 TCGA-EE-A3AC-06 21 47656757 47656757 T C MCM3AP Missense_Mutation p.T1924A 0.47 tolerated(0.62) benign(0.001) TCGA-EE-A3AC-06 22 19203733 19203733 G A CLTCL1 Missense_Mutation p.P985S 0.43 deleterious(0.05) probably_damaging(1) TCGA-EE-A3AC-06 22 20229843 20229843 G A RTN4R Silent p.L271L 0.44 TCGA-EE-A3AC-06 22 22057767 22057767 C T YPEL1 Silent p.V54V 0.35 TCGA-EE-A3AC-06 22 22057768 22057768 C T YPEL1 Splice_Site p.X54_splice 0.34 TCGA-EE-A3AC-06 22 24034836 24034836 G A RGL4 Intron 0.45 TCGA-EE-A3AC-06 22 24226491 24226491 G A SLC2A11 Missense_Mutation p.G396R 0.36 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A3AC-06 22 24621549 24621549 C T GGT5 Missense_Mutation p.R434Q 0.43 deleterious(0) possibly_damaging(0.658) TCGA-EE-A3AC-06 22 25597425 25597425 G A CRYBB3 Missense_Mutation p.G21E 0.37 deleterious(0.05) benign(0.049) TCGA-EE-A3AC-06 22 26422964 26422964 G A MYO18B Missense_Mutation p.E2342K 0.45 tolerated(0.53) benign(0.055) TCGA-EE-A3AC-06 22 30123667 30123667 C T CABP7 Silent p.F42F 0.45 TCGA-EE-A3AC-06 22 31644699 31644699 G A LIMK2 5'UTR 0.35 TCGA-EE-A3AC-06 22 32753966 32753966 C T RFPL3 5'UTR 0.46 TCGA-EE-A3AC-06 22 32894465 32894465 C T FBXO7 Missense_Mutation p.P506L 0.50 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A3AC-06 22 36624020 36624020 G A APOL2 Silent p.L148L 0.38 TCGA-EE-A3AC-06 22 37708069 37708069 G A CYTH4 Silent p.L322L 0.34 TCGA-EE-A3AC-06 22 39884365 39884365 A C MGAT3 Missense_Mutation p.E338A 0.44 deleterious(0) possibly_damaging(0.826) TCGA-EE-A3AC-06 22 42128268 42128268 G A MEI1 Silent p.R372R 0.32 TCGA-EE-A3AC-06 22 42263286 42263286 T C SREBF2 Splice_Site p.X180_splice 0.29 TCGA-EE-A3AC-06 22 45258499 45258499 C T ARHGAP8 3'UTR 0.35 TCGA-EE-A3AC-06 22 45719294 45719294 C T FAM118A Missense_Mutation p.R96W 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 22 46752825 46752825 C T TRMU Silent p.G396G 0.50 TCGA-EE-A3AC-06 22 46752826 46752826 C G TRMU Missense_Mutation p.Q397E 0.53 tolerated(0.17) benign(0.01) TCGA-EE-A3AC-06 22 50313429 50313429 C T CRELD2 Silent p.F88F 0.28 TCGA-EE-A3AC-06 22 50436709 50436709 T G IL17REL Missense_Mutation p.T211P 0.35 tolerated(0.11) possibly_damaging(0.544) TCGA-EE-A3AC-06 2 100038043 100038043 G A REV1 Silent p.T583T 0.38 TCGA-EE-A3AC-06 2 100910764 100910764 G A LONRF2 Missense_Mutation p.R562W 0.35 tolerated(0.1) benign(0.017) TCGA-EE-A3AC-06 2 102644761 102644761 G A IL1R2 Nonsense_Mutation p.W368* 0.47 TCGA-EE-A3AC-06 2 103013002 103013002 G A IL18R1 Missense_Mutation p.E428K 0.39 deleterious(0.01) benign(0.398) TCGA-EE-A3AC-06 2 103431269 103431269 G A TMEM182 Missense_Mutation p.E178K 0.41 tolerated(0.27) probably_damaging(0.973) TCGA-EE-A3AC-06 2 109545659 109545659 G A EDAR Silent p.L117L 0.26 TCGA-EE-A3AC-06 2 112620119 112620119 T C ANAPC1 Missense_Mutation p.N370S 0.13 tolerated(0.83) benign(0.064) TCGA-EE-A3AC-06 2 112722775 112722775 G A MERTK Silent p.T255T 0.35 TCGA-EE-A3AC-06 2 113304673 113304673 C T POLR1B Missense_Mutation p.P88S 0.43 tolerated(0.27) benign(0.05) TCGA-EE-A3AC-06 2 113736264 113736264 C T IL36G Nonsense_Mutation p.Q17* 0.42 TCGA-EE-A3AC-06 2 11750946 11750946 G A GREB1 Silent p.Q933Q 0.41 TCGA-EE-A3AC-06 2 120369239 120369239 G A PCDP1 Missense_Mutation p.G411E 0.34 deleterious(0.04) benign(0.412) TCGA-EE-A3AC-06 2 121728002 121728002 C T GLI2 Silent p.P293P 0.50 TCGA-EE-A3AC-06 2 127453565 127453565 C T GYPC Silent p.F78F 0.35 TCGA-EE-A3AC-06 2 127806052 127806052 T G BIN1 3'UTR 0.28 TCGA-EE-A3AC-06 2 131520228 131520228 G A AMER3 Missense_Mutation p.G195R 0.37 deleterious(0.04) benign(0.272) TCGA-EE-A3AC-06 2 133540798 133540798 G A NCKAP5 Missense_Mutation p.P1196S 0.45 tolerated(0.26) benign(0.059) TCGA-EE-A3AC-06 2 135781085 135781085 C T MAP3K19 Intron 0.26 TCGA-EE-A3AC-06 2 136664915 136664915 G A DARS Missense_Mutation p.P493S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 2 137872713 137872713 G A THSD7B Missense_Mutation p.E407K 0.35 deleterious(0.03) possibly_damaging(0.702) TCGA-EE-A3AC-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.38 tolerated(0.95) unknown(0) TCGA-EE-A3AC-06 2 144461039 144461040 - ACTC ARHGAP15 Frame_Shift_Ins p.P399Tfs*7 0.30 TCGA-EE-A3AC-06 2 150426675 150426675 C T MMADHC Missense_Mutation p.G235E 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AC-06 2 150426676 150426676 C T MMADHC Missense_Mutation p.G235R 0.30 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AC-06 2 160269054 160269054 T C BAZ2B Silent p.G823G 0.36 TCGA-EE-A3AC-06 2 161141366 161141366 G A RBMS1 Missense_Mutation p.P274S 0.30 deleterious(0.02) benign(0.316) TCGA-EE-A3AC-06 2 163128858 163128858 G A IFIH1 Silent p.L832L 0.38 TCGA-EE-A3AC-06 2 163130398 163130398 G A IFIH1 Silent p.I787I 0.47 TCGA-EE-A3AC-06 2 163236418 163236418 G A KCNH7 Missense_Mutation p.L1026F 0.36 tolerated(0.34) benign(0.002) TCGA-EE-A3AC-06 2 166901660 166901660 C T SCN1A Missense_Mutation p.E519K 0.39 tolerated(1) probably_damaging(0.928) TCGA-EE-A3AC-06 2 166905446 166905446 G A SCN1A Silent p.F326F 0.36 TCGA-EE-A3AC-06 2 167060676 167060676 G A SCN9A Silent p.I1510I 0.37 TCGA-EE-A3AC-06 2 168101155 168101155 G A XIRP2 Missense_Mutation p.D1085N 0.43 benign(0.386) TCGA-EE-A3AC-06 2 168104861 168104861 C T XIRP2 Missense_Mutation p.P2320L 0.47 probably_damaging(0.978) TCGA-EE-A3AC-06 2 168931712 168931712 G A STK39 Silent p.H373H 0.50 TCGA-EE-A3AC-06 2 170550918 170550918 G A CCDC173 5'UTR 0.24 TCGA-EE-A3AC-06 2 171056660 171056660 G A MYO3B Missense_Mutation p.D63N 0.38 deleterious(0.03) possibly_damaging(0.8) TCGA-EE-A3AC-06 2 179296897 179296897 G A PRKRA Missense_Mutation p.S290F 0.33 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AC-06 2 179495544 179495544 A T TTN Missense_Mutation p.L14714Q 0.39 TCGA-EE-A3AC-06 2 179643790 179643790 T C TTN Missense_Mutation p.D1340G 0.43 TCGA-EE-A3AC-06 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.29 TCGA-EE-A3AC-06 2 189458757 189458757 C T GULP1 3'UTR 0.28 TCGA-EE-A3AC-06 2 189871160 189871160 T G COL3A1 Missense_Mutation p.S1061R 0.23 probably_damaging(0.913) TCGA-EE-A3AC-06 2 190584441 190584441 A C ANKAR Missense_Mutation p.N790H 0.39 tolerated(0.11) benign(0.002) TCGA-EE-A3AC-06 2 196659171 196659171 C T DNAH7 Missense_Mutation p.G3536E 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 2 196825267 196825267 C T DNAH7 Missense_Mutation p.D870N 0.32 tolerated(0.22) benign(0.035) TCGA-EE-A3AC-06 2 196852704 196852704 C T DNAH7 Missense_Mutation p.E535K 0.30 tolerated(0.07) benign(0.005) TCGA-EE-A3AC-06 2 197590773 197590773 C T CCDC150 Nonsense_Mutation p.Q836* 0.38 TCGA-EE-A3AC-06 2 198950623 198950623 C T PLCL1 Silent p.I794I 0.35 TCGA-EE-A3AC-06 2 201718717 201718717 C T CLK1 Splice_Site p.X449_splice 0.39 TCGA-EE-A3AC-06 2 207530603 207530603 C T DYTN Silent p.R377R 0.23 TCGA-EE-A3AC-06 2 21233995 21233995 C T APOB Silent p.G1915G 0.36 TCGA-EE-A3AC-06 2 217279598 217279598 C T SMARCAL1 Silent p.F57F 0.39 TCGA-EE-A3AC-06 2 219292982 219292982 G A VIL1 Silent p.G163G 0.42 TCGA-EE-A3AC-06 2 220168482 220168482 G A PTPRN Missense_Mutation p.P118S 0.36 tolerated(0.23) benign(0.011) TCGA-EE-A3AC-06 2 220476525 220476525 C T STK11IP Silent p.T779T 0.31 TCGA-EE-A3AC-06 2 226446850 226446850 G A NYAP2 Silent p.E239E 0.38 TCGA-EE-A3AC-06 2 226447249 226447249 G A NYAP2 Missense_Mutation p.M372I 0.28 tolerated(0.29) benign(0) TCGA-EE-A3AC-06 2 228004923 228004923 C T COL4A4 Missense_Mutation p.G49E 0.38 probably_damaging(0.993) TCGA-EE-A3AC-06 2 228882998 228882998 C T SPHKAP Missense_Mutation p.E858K 0.37 tolerated(0.09) benign(0.217) TCGA-EE-A3AC-06 2 230910801 230910801 C T SLC16A14 Silent p.S347S 0.28 TCGA-EE-A3AC-06 2 232263129 232263129 C T B3GNT7 Silent p.V233V 0.35 TCGA-EE-A3AC-06 2 233399004 233399004 G A CHRND Silent p.G441G 0.41 TCGA-EE-A3AC-06 2 233899231 233899231 G A NEU2 Missense_Mutation p.G203R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 2 234184462 234184462 C T ATG16L1 Intron 0.39 TCGA-EE-A3AC-06 2 234652230 234652230 G A UGT1A10 Intron 0.36 TCGA-EE-A3AC-06 2 237285791 237285791 C T IQCA1 Missense_Mutation p.G506R 0.33 tolerated(0.05) possibly_damaging(0.882) TCGA-EE-A3AC-06 2 237994633 237994633 G A COPS8 Missense_Mutation p.S9N 0.44 tolerated_low_confidence(0.7) benign(0) TCGA-EE-A3AC-06 2 238275390 238275390 C T COL6A3 Missense_Mutation p.E1814K 0.40 probably_damaging(0.966) TCGA-EE-A3AC-06 2 238277770 238277770 C T COL6A3 Missense_Mutation p.G1446R 0.38 possibly_damaging(0.9) TCGA-EE-A3AC-06 2 238280335 238280335 G A COL6A3 Intron 0.30 TCGA-EE-A3AC-06 2 238296653 238296653 G A COL6A3 Missense_Mutation p.S295F 0.43 benign(0.135) TCGA-EE-A3AC-06 2 241728729 241728729 G A KIF1A Missense_Mutation p.T36I 0.51 deleterious(0.01) benign(0.418) TCGA-EE-A3AC-06 2 26534031 26534031 G A GPR113 Silent p.T855T 0.36 TCGA-EE-A3AC-06 2 27454446 27454446 A G CAD Missense_Mutation p.M800V 0.52 tolerated(0.22) benign(0) TCGA-EE-A3AC-06 2 27803256 27803256 G A C2orf16 Missense_Mutation p.E1273K 0.32 tolerated(0.05) benign(0) TCGA-EE-A3AC-06 2 29074031 29074031 G A TRMT61B Nonsense_Mutation p.Q407* 0.31 TCGA-EE-A3AC-06 2 3196249 3196249 G A TSSC1 Missense_Mutation p.P309S 0.39 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A3AC-06 2 32689721 32689721 C T BIRC6 Missense_Mutation p.P1696S 0.30 probably_damaging(0.996) TCGA-EE-A3AC-06 2 33003043 33003043 C T TTC27 Missense_Mutation p.P592L 0.37 tolerated(0.05) possibly_damaging(0.785) TCGA-EE-A3AC-06 2 37334350 37334350 C T EIF2AK2 3'UTR 0.45 TCGA-EE-A3AC-06 2 37415630 37415630 C T SULT6B1 Missense_Mutation p.E14K 0.38 deleterious(0.03) possibly_damaging(0.762) TCGA-EE-A3AC-06 2 39944403 39944403 G A TMEM178A 3'UTR 0.27 TCGA-EE-A3AC-06 2 42936176 42936176 C T MTA3 Silent p.L489L 0.45 TCGA-EE-A3AC-06 2 43519318 43519318 G A THADA Missense_Mutation p.P1621L 0.34 tolerated(0.09) benign(0.072) TCGA-EE-A3AC-06 2 44457895 44457895 T C PPM1B 3'UTR 0.32 TCGA-EE-A3AC-06 2 48873824 48873824 G A STON1-GTF2A1L Silent p.R911R 0.43 TCGA-EE-A3AC-06 2 49210076 49210076 G A FSHR Missense_Mutation p.H215Y 0.38 tolerated(0.22) benign(0.004) TCGA-EE-A3AC-06 2 49295372 49295372 C T FSHR Silent p.G70G 0.33 TCGA-EE-A3AC-06 2 54080959 54080959 G A GPR75 Missense_Mutation p.S312F 0.40 tolerated(0.05) probably_damaging(0.987) TCGA-EE-A3AC-06 2 54153116 54153116 G A PSME4 Silent p.F546F 0.30 TCGA-EE-A3AC-06 2 65488384 65488384 C T ACTR2 Missense_Mutation p.P252S 0.40 deleterious(0) benign(0.28) TCGA-EE-A3AC-06 2 68872909 68872909 C T PROKR1 5'UTR 0.27 TCGA-EE-A3AC-06 2 71791229 71791229 G A DYSF Silent p.Q817Q 0.52 TCGA-EE-A3AC-06 2 86075167 86075167 G A ST3GAL5 Missense_Mutation p.P160L 0.39 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A3AC-06 2 86272788 86272788 C T POLR1A Silent p.R946R 0.49 TCGA-EE-A3AC-06 2 86272789 86272789 C A POLR1A Missense_Mutation p.R946M 0.50 deleterious(0) probably_damaging(0.95) TCGA-EE-A3AC-06 2 89513355 89513355 G A IGKV1-27 Silent p.L10L 0.36 TCGA-EE-A3AC-06 2 97405783 97405783 C T LMAN2L 5'UTR 0.37 TCGA-EE-A3AC-06 2 98996720 98996720 G A CNGA3 Missense_Mutation p.D100N 0.41 deleterious(0) benign(0.131) TCGA-EE-A3AC-06 3 102153905 102153905 G A ZPLD1 5'UTR 0.47 TCGA-EE-A3AC-06 3 102196369 102196369 C T ZPLD1 Silent p.S401S 0.38 TCGA-EE-A3AC-06 3 10370590 10370590 C T ATP2B2 Missense_Mutation p.D1214N 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A3AC-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.27 deleterious(0) possibly_damaging(0.906) TCGA-EE-A3AC-06 3 112358629 112358629 A T CCDC80 Missense_Mutation p.S42T 0.35 tolerated_low_confidence(0.14) benign(0) TCGA-EE-A3AC-06 3 113652386 113652386 G A GRAMD1C Missense_Mutation p.R413Q 0.38 tolerated(1) benign(0) TCGA-EE-A3AC-06 3 119336910 119336910 T C PLA1A Missense_Mutation p.Y267H 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 3 120424951 120424951 G A RABL3 Silent p.F93F 0.39 TCGA-EE-A3AC-06 3 122003187 122003187 A T CASR Nonsense_Mutation p.K806* 0.26 TCGA-EE-A3AC-06 3 122003521 122003521 G A CASR Missense_Mutation p.G917E 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.642) TCGA-EE-A3AC-06 3 124153173 124153173 C T KALRN Missense_Mutation p.S948F 0.51 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-EE-A3AC-06 3 129278531 129278531 G A PLXND1 Silent p.F1743F 0.48 TCGA-EE-A3AC-06 3 133654723 133654723 G A SLCO2A1 Missense_Mutation p.A570V 0.31 tolerated(1) probably_damaging(0.971) TCGA-EE-A3AC-06 3 138724463 138724463 G A PRR23A Silent p.F216F 0.33 TCGA-EE-A3AC-06 3 142281766 142281766 G A ATR Missense_Mutation p.H160Y 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-EE-A3AC-06 3 142281767 142281767 G A ATR Silent p.L159L 0.36 TCGA-EE-A3AC-06 3 148614600 148614600 C T CPA3 3'UTR 0.50 TCGA-EE-A3AC-06 3 14861592 14861592 C T FGD5 Silent p.F338F 0.42 TCGA-EE-A3AC-06 3 148792076 148792076 C T HLTF Missense_Mutation p.G152E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 3 14905750 14905750 C T FGD5 Missense_Mutation p.P881S 0.37 tolerated(0.26) benign(0.029) TCGA-EE-A3AC-06 3 150377804 150377804 C T FAM194A Missense_Mutation p.E623K 0.39 tolerated(0.26) benign(0.134) TCGA-EE-A3AC-06 3 150930991 150930991 G A P2RY14 3'UTR 0.39 TCGA-EE-A3AC-06 3 158261214 158261214 G A RSRC1 Missense_Mutation p.D284N 0.48 tolerated_low_confidence(0.32) possibly_damaging(0.846) TCGA-EE-A3AC-06 3 158983150 158983150 G A IQCJ Silent p.K146K 0.48 TCGA-EE-A3AC-06 3 159605541 159605541 G A IQCJ-SCHIP1 Silent p.E423E 0.44 TCGA-EE-A3AC-06 3 159708099 159708099 G A IL12A Silent p.K88K 0.49 TCGA-EE-A3AC-06 3 161214704 161214704 G A OTOL1 Missense_Mutation p.E37K 0.21 tolerated(0.28) unknown(0) TCGA-EE-A3AC-06 3 167023676 167023676 C T ZBBX Missense_Mutation p.E494K 0.52 tolerated(0.11) possibly_damaging(0.625) TCGA-EE-A3AC-06 3 168806893 168806893 C T MECOM Silent p.R1037R 0.38 TCGA-EE-A3AC-06 3 168838981 168838981 C T MECOM Missense_Mutation p.S209N 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 3 170150514 170150514 C T CLDN11 Silent p.S198S 0.36 TCGA-EE-A3AC-06 3 170198506 170198506 G A SLC7A14 Missense_Mutation p.A522V 0.36 tolerated(0.4) benign(0.032) TCGA-EE-A3AC-06 3 171395396 171395396 G A PLD1 Silent p.F652F 0.39 TCGA-EE-A3AC-06 3 174974280 174974280 C T NAALADL2 Silent p.I300I 0.30 TCGA-EE-A3AC-06 3 180685959 180685959 G T FXR1 Missense_Mutation p.R440I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-EE-A3AC-06 3 183515738 183515738 C T YEATS2 Missense_Mutation p.S1042F 0.36 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-EE-A3AC-06 3 183899730 183899730 C T AP2M1 Silent p.P286P 0.33 TCGA-EE-A3AC-06 3 186435301 186435301 C T KNG1 5'UTR 0.45 TCGA-EE-A3AC-06 3 187447572 187447572 G A BCL6 Silent p.L207L 0.36 TCGA-EE-A3AC-06 3 188925302 188925302 G A TPRG1 Silent p.R43R 0.34 TCGA-EE-A3AC-06 3 194134539 194134539 T A ATP13A3 Silent p.V1144V 0.42 TCGA-EE-A3AC-06 3 20178515 20178515 G A KAT2B Missense_Mutation p.E611K 0.38 tolerated(0.07) possibly_damaging(0.864) TCGA-EE-A3AC-06 3 2777901 2777901 G A CNTN4 Missense_Mutation p.D20N 0.39 tolerated(0.28) benign(0.025) TCGA-EE-A3AC-06 3 30769703 30769703 G A GADL1 3'UTR 0.31 TCGA-EE-A3AC-06 3 3080684 3080684 G A CNTN4 Nonsense_Mutation p.W720* 0.29 TCGA-EE-A3AC-06 3 33135664 33135664 G A TMPPE Silent p.S8S 0.33 TCGA-EE-A3AC-06 3 36872699 36872699 C T TRANK1 Missense_Mutation p.G2748E 0.45 tolerated(1) benign(0.008) TCGA-EE-A3AC-06 3 36872700 36872700 C T TRANK1 Missense_Mutation p.G2748R 0.43 tolerated(0.37) benign(0.02) TCGA-EE-A3AC-06 3 36887806 36887806 C T TRANK1 Silent p.R1664R 0.36 TCGA-EE-A3AC-06 3 38138118 38138118 G A DLEC1 Missense_Mutation p.E744K 0.46 deleterious(0.02) probably_damaging(0.947) TCGA-EE-A3AC-06 3 38454580 38454580 C T XYLB 3'UTR 0.44 TCGA-EE-A3AC-06 3 38591832 38591832 C T SCN5A Missense_Mutation p.D2011N 0.46 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-EE-A3AC-06 3 38892117 38892117 C T SCN11A Missense_Mutation p.M1394I 0.33 tolerated(0.48) benign(0.003) TCGA-EE-A3AC-06 3 38946752 38946752 C T SCN11A Missense_Mutation p.E512K 0.41 deleterious(0.05) possibly_damaging(0.735) TCGA-EE-A3AC-06 3 38991643 38991643 G A SCN11A Missense_Mutation p.R71C 0.31 tolerated(0.08) benign(0.002) TCGA-EE-A3AC-06 3 39229317 39229317 C T XIRP1 Silent p.Q540Q 0.52 TCGA-EE-A3AC-06 3 39307342 39307342 G A CX3CR1 Missense_Mutation p.S252F 0.35 tolerated(0.09) benign(0.027) TCGA-EE-A3AC-06 3 40529755 40529755 C T ZNF619 3'UTR 0.41 TCGA-EE-A3AC-06 3 40574105 40574105 C T ZNF621 Nonsense_Mutation p.Q282* 0.28 TCGA-EE-A3AC-06 3 41275738 41275738 C T CTNNB1 Nonsense_Mutation p.Q545* 0.40 TCGA-EE-A3AC-06 3 425548 425548 G A CHL1 Silent p.K742K 0.46 TCGA-EE-A3AC-06 3 44776471 44776471 A T ZNF501 Silent p.G186G 0.40 TCGA-EE-A3AC-06 3 46245543 46245543 G A CCR1 Missense_Mutation p.P88S 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 3 46479494 46479494 C T LTF Missense_Mutation p.E679K 0.33 tolerated(0.4) benign(0.117) TCGA-EE-A3AC-06 3 46944973 46944973 C T PTH1R Missense_Mutation p.H537Y 0.46 tolerated(1) benign(0.001) TCGA-EE-A3AC-06 3 47045731 47045731 C T NBEAL2 Nonsense_Mutation p.Q2016* 0.27 TCGA-EE-A3AC-06 3 47163851 47163851 T C SETD2 Missense_Mutation p.K759E 0.36 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A3AC-06 3 48200940 48200940 C T CDC25A Missense_Mutation p.R443Q 0.40 deleterious(0.02) probably_damaging(0.983) TCGA-EE-A3AC-06 3 48462730 48462730 C T PLXNB1 Missense_Mutation p.G573R 0.47 tolerated(0.14) probably_damaging(0.948) TCGA-EE-A3AC-06 3 49154907 49154907 G A USP19 Missense_Mutation p.P190L 0.39 tolerated_low_confidence(0.08) benign(0.297) TCGA-EE-A3AC-06 3 49314045 49314045 C T C3orf62 Silent p.E87E 0.45 TCGA-EE-A3AC-06 3 50211368 50211368 C T SEMA3F Silent p.I85I 0.55 TCGA-EE-A3AC-06 3 50254688 50254688 G A SLC38A3 RNA 0.48 TCGA-EE-A3AC-06 3 51897327 51897327 G A IQCF2 Missense_Mutation p.G146S 0.33 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3AC-06 3 52456886 52456886 C T PHF7 Missense_Mutation p.A303V 0.35 tolerated(0.31) benign(0.11) TCGA-EE-A3AC-06 3 53736685 53736685 G A CACNA1D Missense_Mutation p.R413K 0.41 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A3AC-06 3 54604048 54604048 G A CACNA2D3 Missense_Mutation p.G269R 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 3 65349256 65349256 C T MAGI1 Missense_Mutation p.E1127K 0.39 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A3AC-06 3 69092986 69092986 G A TMF1 Missense_Mutation p.S498F 0.24 deleterious(0) possibly_damaging(0.598) TCGA-EE-A3AC-06 3 69986995 69986997 CCA - MITF In_Frame_Del p.T127del 0.38 TCGA-EE-A3AC-06 3 73433158 73433158 C T PDZRN3 Silent p.Q853Q 0.42 TCGA-EE-A3AC-06 3 88039870 88039870 C T HTR1F 5'UTR 0.55 TCGA-EE-A3AC-06 3 9027492 9027492 G A SRGAP3 Missense_Mutation p.P1004L 0.44 tolerated(0.17) benign(0) TCGA-EE-A3AC-06 3 96706675 96706675 G C EPHA6 Missense_Mutation p.V318L 0.35 deleterious(0) benign(0.184) TCGA-EE-A3AC-06 3 96706808 96706808 G A EPHA6 Missense_Mutation p.G362E 0.42 deleterious(0) probably_damaging(0.964) TCGA-EE-A3AC-06 3 96962891 96962891 G A EPHA6 Missense_Mutation p.D456N 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 3 97454904 97454904 C T EPHA6 Missense_Mutation p.L1024F 0.28 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AC-06 3 98189267 98189267 C T OR5K1 Missense_Mutation p.P283S 0.46 deleterious(0.01) possibly_damaging(0.769) TCGA-EE-A3AC-06 4 100528101 100528101 C T MTTP Missense_Mutation p.P514L 0.45 tolerated(0.25) benign(0.002) TCGA-EE-A3AC-06 4 100532325 100532325 G A MTTP Missense_Mutation p.E599K 0.54 deleterious(0) benign(0.097) TCGA-EE-A3AC-06 4 110662205 110662205 C T CFI Missense_Mutation p.M532I 0.36 tolerated(0.39) benign(0.003) TCGA-EE-A3AC-06 4 114208794 114208794 G A ANK2 Missense_Mutation p.E705K 0.22 probably_damaging(0.999) TCGA-EE-A3AC-06 4 114277126 114277126 C T ANK2 Missense_Mutation p.T2451I 0.41 probably_damaging(1) TCGA-EE-A3AC-06 4 120419758 120419758 A G PDE5A Nonstop_Mutation p.*876Rext*8 0.32 TCGA-EE-A3AC-06 4 120548355 120548355 G A PDE5A Intron 0.39 TCGA-EE-A3AC-06 4 126238442 126238442 G A FAT4 Silent p.E292E 0.46 TCGA-EE-A3AC-06 4 129193638 129193638 G A PGRMC2 Silent p.A175A 0.26 TCGA-EE-A3AC-06 4 155505343 155505343 G A FGA Missense_Mutation p.S845F 0.36 deleterious(0.02) benign(0.134) TCGA-EE-A3AC-06 4 156643314 156643314 G A GUCY1A3 Missense_Mutation p.R614Q 0.29 tolerated(0.08) possibly_damaging(0.817) TCGA-EE-A3AC-06 4 164272452 164272452 G A NPY5R Missense_Mutation p.E343K 0.41 tolerated(0.07) possibly_damaging(0.715) TCGA-EE-A3AC-06 4 175237393 175237393 T A CEP44 Silent p.T346T 0.38 TCGA-EE-A3AC-06 4 175899230 175899230 C T ADAM29 3'UTR 0.47 TCGA-EE-A3AC-06 4 178257437 178257437 G A NEIL3 Missense_Mutation p.E197K 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 4 184562537 184562537 A G RWDD4 3'UTR 0.41 TCGA-EE-A3AC-06 4 184572437 184572437 G A RWDD4 Missense_Mutation p.S50F 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AC-06 4 184585175 184585175 C T TRAPPC11 Missense_Mutation p.S52F 0.37 tolerated(0.52) possibly_damaging(0.485) TCGA-EE-A3AC-06 4 187005261 187005261 C T TLR3 Silent p.I807I 0.31 TCGA-EE-A3AC-06 4 187209625 187209625 C T F11 Silent p.L579L 0.44 TCGA-EE-A3AC-06 4 22820518 22820518 G A GBA3 Missense_Mutation p.R461Q 0.79 tolerated(0.27) benign(0.001) TCGA-EE-A3AC-06 4 25005339 25005339 C T LGI2 Missense_Mutation p.A458T 0.39 tolerated(0.88) probably_damaging(0.971) TCGA-EE-A3AC-06 4 37962083 37962083 G A PTTG2 Missense_Mutation p.E10K 0.23 deleterious(0) probably_damaging(0.944) TCGA-EE-A3AC-06 4 38799295 38799295 T C TLR1 Silent p.E386E 0.35 TCGA-EE-A3AC-06 4 49032922 49032922 G A CWH43 Missense_Mutation p.E485K 0.37 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AC-06 4 517605 517605 C T PIGG Missense_Mutation p.P658S 0.50 deleterious(0.01) possibly_damaging(0.839) TCGA-EE-A3AC-06 4 55956205 55956205 G A KDR Missense_Mutation p.S1037L 0.36 deleterious(0) probably_damaging(0.916) TCGA-EE-A3AC-06 4 55972108 55972108 C T KDR Splice_Site p.X513_splice 0.36 TCGA-EE-A3AC-06 4 56304484 56304484 C T CLOCK Missense_Mutation p.A776T 0.38 tolerated(0.16) benign(0.036) TCGA-EE-A3AC-06 4 56304485 56304485 C T CLOCK Silent p.Q775Q 0.37 TCGA-EE-A3AC-06 4 6377625 6377625 C T PPP2R2C Missense_Mutation p.R123Q 0.45 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A3AC-06 4 68543347 68543347 G A UBA6 Silent p.S149S 0.37 TCGA-EE-A3AC-06 4 68725321 68725321 C T TMPRSS11D Silent p.V28V 0.54 TCGA-EE-A3AC-06 4 68797744 68797744 T A TMPRSS11A Missense_Mutation p.K99I 0.37 deleterious(0.03) possibly_damaging(0.613) TCGA-EE-A3AC-06 4 69343147 69343147 G A TMPRSS11E Missense_Mutation p.M256I 0.38 tolerated(0.1) benign(0.001) TCGA-EE-A3AC-06 4 69416524 69416524 G A UGT2B17 Missense_Mutation p.P395L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 4 71255434 71255434 C T SMR3B Missense_Mutation p.P37S 0.42 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AC-06 4 76793175 76793175 T G PPEF2 Intron 0.25 TCGA-EE-A3AC-06 4 76793176 76793176 G A PPEF2 Splice_Site p.X550_splice 0.25 TCGA-EE-A3AC-06 4 77317607 77317607 G A CCDC158 Missense_Mutation p.R35C 0.41 tolerated(0.08) possibly_damaging(0.606) TCGA-EE-A3AC-06 4 79366741 79366741 G A FRAS1 Missense_Mutation p.E1911K 0.35 possibly_damaging(0.479) TCGA-EE-A3AC-06 4 79396646 79396646 G A FRAS1 Silent p.G2579G 0.33 TCGA-EE-A3AC-06 4 81207508 81207508 G A FGF5 Silent p.R163R 0.43 TCGA-EE-A3AC-06 4 8211393 8211393 G A SH3TC1 Intron 0.50 TCGA-EE-A3AC-06 4 8242471 8242471 C T SH3TC1 Missense_Mutation p.A1267V 0.48 deleterious(0) probably_damaging(0.929) TCGA-EE-A3AC-06 4 8477615 8477615 T C TRMT44 Missense_Mutation p.F721L 0.42 deleterious(0) probably_damaging(0.925) TCGA-EE-A3AC-06 4 8602838 8602838 C T CPZ Intron 0.36 TCGA-EE-A3AC-06 4 8603046 8603046 C T CPZ Silent p.A106A 0.56 TCGA-EE-A3AC-06 4 87809342 87809342 G A C4orf36 Missense_Mutation p.S51L 0.34 tolerated(0.14) benign(0.008) TCGA-EE-A3AC-06 4 89688742 89688742 C T FAM13A Missense_Mutation p.G514R 0.27 tolerated(0.45) benign(0.066) TCGA-EE-A3AC-06 4 94547532 94547532 G A GRID2 Missense_Mutation p.G769E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 5 100147758 100147758 G A ST8SIA4 Silent p.F291F 0.42 TCGA-EE-A3AC-06 5 110782473 110782473 C T CAMK4 Silent p.I183I 0.42 TCGA-EE-A3AC-06 5 112720758 112720758 C T MCC Missense_Mutation p.E108K 0.35 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-EE-A3AC-06 5 112920076 112920076 G A YTHDC2 Missense_Mutation p.R1242Q 0.44 tolerated(0.41) benign(0.001) TCGA-EE-A3AC-06 5 118176690 118176690 T G DTWD2 Silent p.G273G 0.45 TCGA-EE-A3AC-06 5 121187657 121187657 C T FTMT 5'UTR 0.35 TCGA-EE-A3AC-06 5 1239618 1239618 C T SLC6A18 Silent p.F262F 0.34 TCGA-EE-A3AC-06 5 123983901 123983901 C T ZNF608 Missense_Mutation p.D726N 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AC-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.37 benign(0) TCGA-EE-A3AC-06 5 13793641 13793641 G A DNAH5 Missense_Mutation p.S2736F 0.45 possibly_damaging(0.788) TCGA-EE-A3AC-06 5 13830179 13830179 C T DNAH5 Missense_Mutation p.D2069N 0.41 possibly_damaging(0.822) TCGA-EE-A3AC-06 5 13894774 13894774 T A DNAH5 Missense_Mutation p.T806S 0.43 benign(0.04) TCGA-EE-A3AC-06 5 13901544 13901544 G A DNAH5 Silent p.I623I 0.30 TCGA-EE-A3AC-06 5 139941498 139941498 C G APBB3 Intron 0.50 TCGA-EE-A3AC-06 5 140056669 140056669 C T HARS Missense_Mutation p.D286N 0.37 deleterious(0.03) benign(0.323) TCGA-EE-A3AC-06 5 140056670 140056670 C T HARS Silent p.Q285Q 0.36 TCGA-EE-A3AC-06 5 140176162 140176162 G A PCDHA2 Missense_Mutation p.R538Q 0.42 tolerated_low_confidence(0.08) benign(0.321) TCGA-EE-A3AC-06 5 140176163 140176163 G A PCDHA2 Silent p.R538R 0.42 TCGA-EE-A3AC-06 5 140188067 140188067 C T PCDHA4 Missense_Mutation p.S432L 0.35 tolerated_low_confidence(0.05) benign(0.127) TCGA-EE-A3AC-06 5 140188815 140188815 G A PCDHA4 Silent p.R681R 0.64 TCGA-EE-A3AC-06 5 140209885 140209885 C T PCDHA6 Missense_Mutation p.P737S 0.32 deleterious_low_confidence(0.04) benign(0.281) TCGA-EE-A3AC-06 5 140248955 140248955 G A PCDHA11 Silent p.R89R 0.38 TCGA-EE-A3AC-06 5 140348166 140348166 C T PCDHAC2 Silent p.T605T 0.29 TCGA-EE-A3AC-06 5 140432252 140432252 G A PCDHB1 Silent p.G399G 0.27 TCGA-EE-A3AC-06 5 140476702 140476702 C T PCDHB2 Silent p.F776F 0.39 TCGA-EE-A3AC-06 5 140501624 140501624 C T PCDHB4 Missense_Mutation p.A15V 0.37 tolerated_low_confidence(0.29) benign(0.001) TCGA-EE-A3AC-06 5 140559453 140559453 C T PCDHB8 Missense_Mutation p.P613L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-EE-A3AC-06 5 140559641 140559641 G A PCDHB8 Missense_Mutation p.E676K 0.43 deleterious_low_confidence(0.01) benign(0.054) TCGA-EE-A3AC-06 5 140596140 140596140 C T PCDHB13 3'UTR 0.46 TCGA-EE-A3AC-06 5 140711004 140711004 C T PCDHGA1 Silent p.V251V 0.38 TCGA-EE-A3AC-06 5 140711005 140711005 C T PCDHGA1 Missense_Mutation p.P252S 0.38 deleterious_low_confidence(0.01) benign(0.081) TCGA-EE-A3AC-06 5 140731332 140731332 C T PCDHGB1 Missense_Mutation p.S502F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 5 140740020 140740020 C T PCDHGB2 Silent p.F106F 0.35 TCGA-EE-A3AC-06 5 140740377 140740377 G A PCDHGB2 Silent p.T225T 0.60 TCGA-EE-A3AC-06 5 140745801 140745801 G A PCDHGA5 Missense_Mutation p.R635K 0.45 tolerated_low_confidence(0.17) benign(0.12) TCGA-EE-A3AC-06 5 140746222 140746222 C T PCDHGA5 Silent p.Y775Y 0.37 TCGA-EE-A3AC-06 5 140754857 140754857 C T PCDHGA6 Nonsense_Mutation p.R403* 0.34 TCGA-EE-A3AC-06 5 140773672 140773672 C T PCDHGA8 Missense_Mutation p.P431L 0.39 deleterious_low_confidence(0.01) benign(0.399) TCGA-EE-A3AC-06 5 140793665 140793665 C T PCDHGA10 Missense_Mutation p.S308L 0.28 tolerated_low_confidence(1) benign(0.011) TCGA-EE-A3AC-06 5 141028539 141028539 C T FCHSD1 Silent p.Q187Q 0.43 TCGA-EE-A3AC-06 5 141233797 141233797 G - PCDH1 Frame_Shift_Del p.P1175Rfs*39 0.25 TCGA-EE-A3AC-06 5 145246220 145246220 C T GRXCR2 Missense_Mutation p.M136I 0.34 tolerated(0.12) benign(0.067) TCGA-EE-A3AC-06 5 145969630 145969630 G A PPP2R2B Silent p.I407I 0.43 TCGA-EE-A3AC-06 5 149509527 149509527 G A PDGFRB Missense_Mutation p.P458S 0.35 tolerated(1) benign(0.008) TCGA-EE-A3AC-06 5 149563195 149563195 C T CDX1 Silent p.L250L 0.27 TCGA-EE-A3AC-06 5 154316593 154316593 G C GEMIN5 Missense_Mutation p.L107V 0.30 tolerated(0.9) benign(0.017) TCGA-EE-A3AC-06 5 154998 154998 C T PLEKHG4B Silent p.V311V 0.35 TCGA-EE-A3AC-06 5 15928140 15928140 C T FBXL7 Missense_Mutation p.S90F 0.25 deleterious(0.04) benign(0.015) TCGA-EE-A3AC-06 5 169186717 169186717 T C DOCK2 Silent p.A795A 0.41 TCGA-EE-A3AC-06 5 169508871 169508871 C T DOCK2 Silent p.I1771I 0.34 TCGA-EE-A3AC-06 5 170215596 170215596 C T GABRP 5'UTR 0.40 TCGA-EE-A3AC-06 5 171639158 171639158 G A UBTD2 Silent p.I127I 0.38 TCGA-EE-A3AC-06 5 173316633 173316633 C T CPEB4 5'UTR 0.29 TCGA-EE-A3AC-06 5 175110262 175110262 C T HRH2 Missense_Mutation p.S9F 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A3AC-06 5 175307023 175307023 C T CPLX2 Missense_Mutation p.P127L 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AC-06 5 175772292 175772292 G A SIMC1 Silent p.Q406Q 0.32 TCGA-EE-A3AC-06 5 175919263 175919263 C T FAF2 Missense_Mutation p.S138L 0.42 deleterious(0.03) benign(0.079) TCGA-EE-A3AC-06 5 176522441 176522441 G A FGFR4 Missense_Mutation p.G544R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 5 1799062 1799062 C T MRPL36 Splice_Site 0.25 TCGA-EE-A3AC-06 5 23518019 23518019 G A PRDM9 Missense_Mutation p.E111K 0.44 tolerated_low_confidence(0.28) benign(0.004) TCGA-EE-A3AC-06 5 24487693 24487693 C T CDH10 3'UTR 0.21 TCGA-EE-A3AC-06 5 34823975 34823975 C T RAI14 Silent p.I679I 0.38 TCGA-EE-A3AC-06 5 35771755 35771755 A G SPEF2 Silent p.E1282E 0.48 TCGA-EE-A3AC-06 5 35876084 35876084 G A IL7R Splice_Site p.X293_splice 0.36 TCGA-EE-A3AC-06 5 39315879 39315879 T G C9 Missense_Mutation p.K290Q 0.29 tolerated(0.2) benign(0.219) TCGA-EE-A3AC-06 5 42700087 42700087 G A GHR Missense_Mutation p.E201K 0.32 tolerated(0.16) benign(0.395) TCGA-EE-A3AC-06 5 49699072 49699072 G A EMB Missense_Mutation p.L273F 0.48 deleterious(0.02) benign(0.139) TCGA-EE-A3AC-06 5 55212722 55212722 C T IL31RA Missense_Mutation p.P690L 0.40 tolerated(0.55) benign(0.003) TCGA-EE-A3AC-06 5 63256578 63256578 C T HTR1A Silent p.R323R 0.36 TCGA-EE-A3AC-06 5 78407677 78407677 C T BHMT 5'UTR 0.50 TCGA-EE-A3AC-06 5 79029566 79029566 C T CMYA5 Missense_Mutation p.P1660S 0.35 benign(0.245) TCGA-EE-A3AC-06 5 79032381 79032381 C T CMYA5 Missense_Mutation p.S2598L 0.33 benign(0.115) TCGA-EE-A3AC-06 5 896822 896822 C T TRIP13 Nonsense_Mutation p.Q101* 0.41 TCGA-EE-A3AC-06 5 94259726 94259726 C T MCTP1 Missense_Mutation p.E405K 0.40 tolerated(0.74) benign(0.001) TCGA-EE-A3AC-06 5 9629337 9629337 G A TAS2R1 Missense_Mutation p.P270S 0.38 tolerated(0.09) probably_damaging(0.913) TCGA-EE-A3AC-06 5 96315499 96315499 C T LNPEP Missense_Mutation p.S226L 0.57 tolerated(0.11) benign(0.033) TCGA-EE-A3AC-06 5 96315503 96315503 C T LNPEP Silent p.S227S 0.55 TCGA-EE-A3AC-06 5 96315504 96315504 C T LNPEP Nonsense_Mutation p.Q228* 0.53 TCGA-EE-A3AC-06 5 96503082 96503082 A G RIOK2 Intron 0.38 TCGA-EE-A3AC-06 6 10410440 10410440 G A TFAP2A Silent p.F58F 0.56 TCGA-EE-A3AC-06 6 10995337 10995337 C T ELOVL2 Silent p.R136R 0.35 TCGA-EE-A3AC-06 6 10995338 10995338 C T ELOVL2 Missense_Mutation p.R136Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 6 119324215 119324215 C T FAM184A Splice_Site p.X646_splice 0.67 TCGA-EE-A3AC-06 6 119501111 119501111 C T MAN1A1 Splice_Site p.X612_splice 0.70 TCGA-EE-A3AC-06 6 131973708 131973708 C T ENPP3 Missense_Mutation p.R102C 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 6 132168966 132168966 G A ENPP1 Silent p.L97L 0.72 TCGA-EE-A3AC-06 6 137519694 137519694 G A IFNGR1 Missense_Mutation p.S315F 0.54 tolerated(0.14) benign(0) TCGA-EE-A3AC-06 6 144269140 144269140 G A PLAGL1 Missense_Mutation p.S45F 0.68 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 6 146351187 146351187 C T GRM1 Silent p.F178F 0.61 TCGA-EE-A3AC-06 6 151152181 151152181 C T PLEKHG1 Missense_Mutation p.P645L 0.70 tolerated(0.18) benign(0.043) TCGA-EE-A3AC-06 6 151152182 151152182 C T PLEKHG1 Silent p.P645P 0.78 TCGA-EE-A3AC-06 6 151894487 151894487 C T CCDC170 Missense_Mutation p.T318I 0.67 deleterious(0.02) benign(0.037) TCGA-EE-A3AC-06 6 157529030 157529030 A C ARID1B 3'UTR 0.66 TCGA-EE-A3AC-06 6 160664693 160664693 G A SLC22A2 Missense_Mutation p.T397I 0.58 deleterious(0.01) possibly_damaging(0.708) TCGA-EE-A3AC-06 6 160868816 160868816 C T SLC22A3 Missense_Mutation p.P526S 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 6 161587366 161587366 C T AGPAT4 Missense_Mutation p.E88K 0.70 deleterious(0) possibly_damaging(0.458) TCGA-EE-A3AC-06 6 17817388 17817388 C G KIF13A Silent p.R621R 0.36 TCGA-EE-A3AC-06 6 24278405 24278405 G A DCDC2 Missense_Mutation p.S265F 0.40 tolerated(0.11) benign(0.396) TCGA-EE-A3AC-06 6 28962847 28962847 C T ZNF311 Silent p.G644G 0.45 TCGA-EE-A3AC-06 6 29430318 29430318 C T OR2H1 Missense_Mutation p.L258F 0.39 tolerated(0.06) benign(0.058) TCGA-EE-A3AC-06 6 31083847 31083847 G A CDSN Silent p.D515D 0.33 TCGA-EE-A3AC-06 6 31915831 31915831 A G CFB Silent p.K792K 0.41 TCGA-EE-A3AC-06 6 31926882 31926882 C T SKIV2L 5'UTR 0.48 TCGA-EE-A3AC-06 6 32151127 32151127 C T AGER Missense_Mutation p.E132K 0.39 tolerated(0.15) benign(0.093) TCGA-EE-A3AC-06 6 32182001 32182001 C T NOTCH4 Missense_Mutation p.G685R 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AC-06 6 32364160 32364160 G A BTNL2 Missense_Mutation p.S245F 0.28 deleterious(0.02) benign(0.2) TCGA-EE-A3AC-06 6 35704966 35704966 G A ARMC12 Silent p.A27A 0.38 TCGA-EE-A3AC-06 6 36569554 36569554 C T SRSF3 Silent p.S150S 0.47 TCGA-EE-A3AC-06 6 36714266 36714266 G A CPNE5 Silent p.I369I 0.50 TCGA-EE-A3AC-06 6 37451045 37451045 G A CCDC167 Missense_Mutation p.R71W 0.37 deleterious(0.02) benign(0.187) TCGA-EE-A3AC-06 6 38843419 38843419 C T DNAH8 Missense_Mutation p.S2341F 0.35 benign(0.001) TCGA-EE-A3AC-06 6 38889210 38889210 C T DNAH8 Silent p.A3313A 0.35 TCGA-EE-A3AC-06 6 4099236 4099236 G A C6orf201 Missense_Mutation p.E30K 0.41 tolerated(0.09) probably_damaging(0.981) TCGA-EE-A3AC-06 6 42666149 42666149 C T PRPH2 Missense_Mutation p.E309K 0.39 deleterious(0) possibly_damaging(0.839) TCGA-EE-A3AC-06 6 43269945 43269945 G A SLC22A7 Missense_Mutation p.V357M 0.47 tolerated(0.06) possibly_damaging(0.633) TCGA-EE-A3AC-06 6 44144023 44144023 C T CAPN11 Missense_Mutation p.R317W 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 6 44274084 44274084 G A AARS2 Silent p.S411S 0.41 TCGA-EE-A3AC-06 6 46216547 46216547 G A RCAN2 Silent p.F104F 0.25 TCGA-EE-A3AC-06 6 46659356 46659356 G A TDRD6 Missense_Mutation p.R1164K 0.41 tolerated(0.95) benign(0.002) TCGA-EE-A3AC-06 6 49667538 49667538 C T CRISP2 Missense_Mutation p.D84N 0.29 tolerated(0.33) benign(0.004) TCGA-EE-A3AC-06 6 49806193 49806193 G A CRISP1 Silent p.V193V 0.29 TCGA-EE-A3AC-06 6 51910917 51910917 G A PKHD1 Missense_Mutation p.S826F 0.43 deleterious(0) possibly_damaging(0.897) TCGA-EE-A3AC-06 6 52897349 52897349 T C ICK Missense_Mutation p.Y87C 0.47 deleterious(0) probably_damaging(0.922) TCGA-EE-A3AC-06 6 52993656 52993656 C T GCM1 Missense_Mutation p.G220E 0.44 tolerated(0.06) possibly_damaging(0.904) TCGA-EE-A3AC-06 6 70037717 70037717 C T BAI3 Missense_Mutation p.P991S 0.81 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 6 7580074 7580074 G A DSP Silent p.T1217T 0.39 TCGA-EE-A3AC-06 6 7585335 7585335 G A DSP Missense_Mutation p.E2614K 0.36 benign(0.196) TCGA-EE-A3AC-06 6 80223146 80223146 A T LCA5 Missense_Mutation p.I168N 0.72 deleterious(0) probably_damaging(0.918) TCGA-EE-A3AC-06 6 83921579 83921579 A G ME1 3'UTR 0.42 TCGA-EE-A3AC-06 6 84573933 84573933 C T CYB5R4 Nonsense_Mutation p.R39* 0.64 TCGA-EE-A3AC-06 6 87725508 87725508 C T HTR1E Silent p.F152F 0.70 TCGA-EE-A3AC-06 6 90409393 90409393 G A MDN1 Missense_Mutation p.S2975L 0.74 benign(0.007) TCGA-EE-A3AC-06 6 93968003 93968003 C T EPHA7 Splice_Site p.X642_splice 0.60 TCGA-EE-A3AC-06 7 100678106 100678106 G A MUC17 Missense_Mutation p.E1137K 0.38 unknown(0) TCGA-EE-A3AC-06 7 100691326 100691326 G A MUC17 Silent p.G4155G 0.43 TCGA-EE-A3AC-06 7 100861399 100861399 G A ZNHIT1 5'UTR 0.57 TCGA-EE-A3AC-06 7 102716232 102716232 G T ARMC10 Nonsense_Mutation p.E50* 0.41 TCGA-EE-A3AC-06 7 102912273 102912273 G A DPY19L2P2 RNA 0.30 TCGA-EE-A3AC-06 7 103130325 103130325 G A RELN Silent p.I3209I 0.45 TCGA-EE-A3AC-06 7 103294589 103294589 C T RELN Missense_Mutation p.G502E 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AC-06 7 117174389 117174389 C T CFTR Silent p.L183L 0.35 TCGA-EE-A3AC-06 7 117365238 117365238 T C CTTNBP2 Missense_Mutation p.K1377E 0.35 deleterious(0.01) benign(0.011) TCGA-EE-A3AC-06 7 126173045 126173045 G A GRM8 Silent p.F797F 0.39 TCGA-EE-A3AC-06 7 130008271 130008271 G A CPA5 Missense_Mutation p.V382I 0.31 tolerated(1) benign(0.322) TCGA-EE-A3AC-06 7 131830012 131830012 C T PLXNA4 Silent p.E1697E 0.31 TCGA-EE-A3AC-06 7 131883357 131883357 C T PLXNA4 Silent p.K875K 0.50 TCGA-EE-A3AC-06 7 140125885 140125885 C T RAB19 Missense_Mutation p.P197S 0.36 tolerated(0.76) benign(0) TCGA-EE-A3AC-06 7 140218491 140218491 C T DENND2A 3'UTR 0.19 TCGA-EE-A3AC-06 7 140218492 140218492 C T DENND2A 3'UTR 0.19 TCGA-EE-A3AC-06 7 141730237 141730237 T C MGAM Missense_Mutation p.F433L 0.28 tolerated(1) benign(0.004) TCGA-EE-A3AC-06 7 141759659 141759659 C T MGAM Missense_Mutation p.P1318S 0.50 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AC-06 7 142239805 142239805 T A TRBV9 Missense_Mutation p.Q25H 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 7 142428907 142428907 G T TRBV28 Missense_Mutation p.K89N 0.53 tolerated(0.71) benign(0.055) TCGA-EE-A3AC-06 7 142919714 142919714 G A TAS2R40 Silent p.T181T 0.42 TCGA-EE-A3AC-06 7 143013372 143013372 C T CLCN1 Nonsense_Mutation p.Q23* 0.32 TCGA-EE-A3AC-06 7 143054034 143054034 G A FAM131B Missense_Mutation p.A231V 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3AC-06 7 149519198 149519198 C T SSPO RNA 0.33 TCGA-EE-A3AC-06 7 150027417 150027417 G A ZBED6CL 5'UTR 0.50 TCGA-EE-A3AC-06 7 150648062 150648062 C T KCNH2 Missense_Mutation p.E698K 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 7 150698429 150698429 C T NOS3 Silent p.I448I 0.35 TCGA-EE-A3AC-06 7 151716746 151716746 C T GALNTL5 Nonsense_Mutation p.R398* 0.43 TCGA-EE-A3AC-06 7 151818699 151818699 G A GALNT11 Silent p.K588K 0.37 TCGA-EE-A3AC-06 7 157959842 157959842 G A PTPRN2 Missense_Mutation p.P231S 0.33 tolerated(0.06) benign(0.321) TCGA-EE-A3AC-06 7 19184901 19184901 G A FERD3L Missense_Mutation p.L29F 0.29 tolerated(0.35) benign(0.014) TCGA-EE-A3AC-06 7 20199263 20199263 C G MACC1 Missense_Mutation p.V241L 0.24 deleterious(0) benign(0.248) TCGA-EE-A3AC-06 7 23391197 23391197 T G IGF2BP3 Missense_Mutation p.D137A 0.27 tolerated(0.42) benign(0.065) TCGA-EE-A3AC-06 7 23391198 23391198 C T IGF2BP3 Missense_Mutation p.D137N 0.29 tolerated(0.34) benign(0.016) TCGA-EE-A3AC-06 7 31887694 31887694 G A PDE1C Silent p.L350L 0.45 TCGA-EE-A3AC-06 7 35013200 35013200 C T DPY19L1 Nonsense_Mutation p.W207* 0.46 TCGA-EE-A3AC-06 7 47859110 47859110 C T C7orf69 Missense_Mutation p.T95I 0.40 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-EE-A3AC-06 7 50468178 50468178 C T IKZF1 Silent p.F429F 0.35 TCGA-EE-A3AC-06 7 72412766 72412766 C T POM121 Missense_Mutation p.P480L 0.22 tolerated(0.69) benign(0.089) TCGA-EE-A3AC-06 7 73513455 73513455 G A LIMK1 Silent p.L165L 0.42 TCGA-EE-A3AC-06 7 73513457 73513457 T G LIMK1 Missense_Mutation p.V166G 0.42 deleterious(0) probably_damaging(0.938) TCGA-EE-A3AC-06 7 74211679 74211679 G A GTF2IRD2 Silent p.F724F 0.41 TCGA-EE-A3AC-06 7 75183801 75183801 G A HIP1 Missense_Mutation p.S663F 0.50 deleterious(0.01) benign(0.056) TCGA-EE-A3AC-06 7 77708331 77708331 G A MAGI2 Silent p.L1213L 0.38 TCGA-EE-A3AC-06 7 82544628 82544628 G A PCLO Missense_Mutation p.S4225L 0.42 unknown(0) TCGA-EE-A3AC-06 7 82764818 82764818 G A PCLO Missense_Mutation p.S683F 0.39 unknown(0) TCGA-EE-A3AC-06 7 86468384 86468384 G A GRM3 Missense_Mutation p.M518I 0.50 tolerated(0.73) benign(0.004) TCGA-EE-A3AC-06 7 881721 881721 G A SUN1 Silent p.L135L 0.35 TCGA-EE-A3AC-06 7 91712547 91712547 G A AKAP9 Missense_Mutation p.E2742K 0.45 benign(0.008) TCGA-EE-A3AC-06 7 99308459 99308459 C T CYP3A7 Missense_Mutation p.E308K 0.52 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AC-06 7 99707825 99707825 C T TAF6 Missense_Mutation p.D423N 0.32 tolerated(0.18) probably_damaging(0.949) TCGA-EE-A3AC-06 8 100844872 100844872 C T VPS13B Silent p.F3227F 0.39 TCGA-EE-A3AC-06 8 100865925 100865925 G A VPS13B Silent p.K3461K 0.39 TCGA-EE-A3AC-06 8 104924360 104924360 G A RIMS2 Missense_Mutation p.G591E 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AC-06 8 105367173 105367173 C T DCSTAMP Silent p.I366I 0.40 TCGA-EE-A3AC-06 8 105509290 105509290 G A LRP12 Missense_Mutation p.A497V 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AC-06 8 10583712 10583712 G A SOX7 Missense_Mutation p.P287S 0.65 tolerated(0.3) benign(0.045) TCGA-EE-A3AC-06 8 109797193 109797193 C T TMEM74 Silent p.Q45Q 0.34 TCGA-EE-A3AC-06 8 110397851 110397851 G A PKHD1L1 Silent p.R187R 0.43 TCGA-EE-A3AC-06 8 110457572 110457572 A T PKHD1L1 Missense_Mutation p.N1825I 0.39 deleterious(0.03) probably_damaging(0.954) TCGA-EE-A3AC-06 8 113662482 113662482 A T CSMD3 Missense_Mutation p.F1034Y 0.45 tolerated(0.07) probably_damaging(0.961) TCGA-EE-A3AC-06 8 113697928 113697928 C T CSMD3 Missense_Mutation p.G730E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 8 113933898 113933898 C T CSMD3 Missense_Mutation p.E531K 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A3AC-06 8 114111174 114111174 C T CSMD3 Missense_Mutation p.G243E 0.47 deleterious(0) possibly_damaging(0.864) TCGA-EE-A3AC-06 8 117778751 117778751 C T UTP23 5'UTR 0.33 TCGA-EE-A3AC-06 8 121295969 121295969 G A COL14A1 Missense_Mutation p.E1307K 0.49 deleterious(0) probably_damaging(0.963) TCGA-EE-A3AC-06 8 125072930 125072930 C T FER1L6 Nonsense_Mutation p.Q1043* 0.23 TCGA-EE-A3AC-06 8 12957202 12957202 C T DLC1 Missense_Mutation p.V882M 0.57 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3AC-06 8 133141804 133141804 G A KCNQ3 Missense_Mutation p.S775F 0.31 deleterious(0.03) probably_damaging(0.936) TCGA-EE-A3AC-06 8 139165277 139165277 C T FAM135B Missense_Mutation p.E481K 0.42 tolerated(0.45) benign(0.003) TCGA-EE-A3AC-06 8 139642954 139642954 C T COL22A1 Missense_Mutation p.G1216E 0.34 unknown(0) TCGA-EE-A3AC-06 8 139788214 139788214 C T COL22A1 Missense_Mutation p.E600K 0.35 unknown(0) TCGA-EE-A3AC-06 8 140630489 140630489 C T KCNK9 3'UTR 0.36 TCGA-EE-A3AC-06 8 140631018 140631018 C T KCNK9 Missense_Mutation p.G203E 0.22 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AC-06 8 140922496 140922496 G A TRAPPC9 Silent p.S1051S 0.35 TCGA-EE-A3AC-06 8 144550575 144550575 G A ZC3H3 Silent p.P694P 0.46 TCGA-EE-A3AC-06 8 17102580 17102580 G A CNOT7 Missense_Mutation p.R28C 0.64 deleterious(0) benign(0.302) TCGA-EE-A3AC-06 8 20077788 20077788 C T ATP6V1B2 Missense_Mutation p.R471C 0.76 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 8 2021490 2021490 C T MYOM2 Missense_Mutation p.H344Y 0.65 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A3AC-06 8 24333967 24333967 C T ADAM7 Missense_Mutation p.H219Y 0.56 tolerated(1) benign(0.037) TCGA-EE-A3AC-06 8 2800022 2800022 C T CSMD1 Missense_Mutation p.G3503R 0.50 probably_damaging(0.992) TCGA-EE-A3AC-06 8 37693275 37693275 C T GPR124 Silent p.I679I 0.62 TCGA-EE-A3AC-06 8 39080726 39080726 C T ADAM32 Silent p.L498L 0.55 TCGA-EE-A3AC-06 8 39587459 39587459 A T ADAM18 Nonstop_Mutation p.*740Yext*7 0.35 TCGA-EE-A3AC-06 8 39618716 39618716 C T ADAM2 Missense_Mutation p.G531E 0.41 tolerated(0.11) benign(0.201) TCGA-EE-A3AC-06 8 39644506 39644506 C T ADAM2 Missense_Mutation p.G293E 0.32 deleterious(0) possibly_damaging(0.771) TCGA-EE-A3AC-06 8 39645728 39645728 C T ADAM2 Missense_Mutation p.E229K 0.19 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AC-06 8 40011013 40011013 G A C8orf4 5'UTR 0.53 TCGA-EE-A3AC-06 8 41792157 41792157 G A KAT6A Missense_Mutation p.S1194F 0.35 benign(0.027) TCGA-EE-A3AC-06 8 42940407 42940407 A T FNTA Silent p.P374P 0.27 TCGA-EE-A3AC-06 8 54684653 54684653 C T ATP6V1H Silent p.L315L 0.41 TCGA-EE-A3AC-06 8 67066387 67066387 G A TRIM55 Missense_Mutation p.G448S 0.31 tolerated_low_confidence(0.32) benign(0.109) TCGA-EE-A3AC-06 8 70488375 70488375 C T SULF1 Missense_Mutation p.P115S 0.42 deleterious(0.04) possibly_damaging(0.9) TCGA-EE-A3AC-06 8 80567234 80567234 G A STMN2 Missense_Mutation p.M139I 0.74 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AC-06 8 82357094 82357094 G A PMP2 Silent p.G68G 0.38 TCGA-EE-A3AC-06 8 86163020 86163020 C T CA13 Missense_Mutation p.S30F 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A3AC-06 9 100139087 100139087 G A CCDC180 Missense_Mutation p.D1673N 0.37 tolerated(0.3) benign(0.004) TCGA-EE-A3AC-06 9 104449092 104449092 C T GRIN3A Missense_Mutation p.E364K 0.38 tolerated(0.22) benign(0.004) TCGA-EE-A3AC-06 9 107267348 107267348 G A OR13F1 Missense_Mutation p.E269K 0.31 tolerated(0.62) benign(0.186) TCGA-EE-A3AC-06 9 107581899 107581899 C A ABCA1 Missense_Mutation p.G1070V 0.45 deleterious(0) possibly_damaging(0.501) TCGA-EE-A3AC-06 9 111617648 111617648 G A ACTL7B Missense_Mutation p.S188F 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AC-06 9 111658840 111658840 T G IKBKAP Missense_Mutation p.Y891S 0.31 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AC-06 9 111812631 111812631 G A TMEM245 Silent p.S685S 0.41 TCGA-EE-A3AC-06 9 116260307 116260307 C T RGS3 Missense_Mutation p.P282S 0.24 tolerated(0.06) benign(0.006) TCGA-EE-A3AC-06 9 120475571 120475571 G A TLR4 Missense_Mutation p.G389S 0.30 tolerated(1) benign(0.125) TCGA-EE-A3AC-06 9 121930245 121930245 G A BRINP1 Missense_Mutation p.S468L 0.50 deleterious(0) possibly_damaging(0.885) TCGA-EE-A3AC-06 9 123330627 123330627 C T CDK5RAP2 Missense_Mutation p.R56K 0.44 tolerated(0.06) benign(0.067) TCGA-EE-A3AC-06 9 123624282 123624282 A C PHF19 Missense_Mutation p.L378V 0.42 tolerated(0.57) benign(0.036) TCGA-EE-A3AC-06 9 123676003 123676003 G A TRAF1 Missense_Mutation p.S103F 0.41 tolerated(0.07) benign(0) TCGA-EE-A3AC-06 9 123860725 123860726 AT C CNTRL Frame_Shift_Del p.N228Tfs*4 0.23 TCGA-EE-A3AC-06 9 125281758 125281758 C T OR1J4 Silent p.F113F 0.49 TCGA-EE-A3AC-06 9 125391722 125391722 G A OR1B1 Silent p.F31F 0.32 TCGA-EE-A3AC-06 9 125423999 125423999 G A OR1L1 Missense_Mutation p.G2E 0.42 tolerated(1) benign(0.003) TCGA-EE-A3AC-06 9 126520093 126520093 A G DENND1A Missense_Mutation p.V64A 0.19 tolerated(0.4) possibly_damaging(0.506) TCGA-EE-A3AC-06 9 130575600 130575600 C T FPGS Missense_Mutation p.P494L 0.44 tolerated(0.2) benign(0.001) TCGA-EE-A3AC-06 9 130575601 130575601 C T FPGS Silent p.P494P 0.43 TCGA-EE-A3AC-06 9 130588123 130588123 G A ENG Silent p.S180S 0.50 TCGA-EE-A3AC-06 9 131752415 131752415 C T NUP188 Silent p.N850N 0.37 TCGA-EE-A3AC-06 9 134072702 134072702 C T NUP214 Missense_Mutation p.P1274L 0.40 benign(0.104) TCGA-EE-A3AC-06 9 137007825 137007825 C T WDR5 Missense_Mutation p.S171L 0.43 tolerated(0.09) benign(0.051) TCGA-EE-A3AC-06 9 137801805 137801805 A G FCN1 Missense_Mutation p.F274L 0.38 deleterious(0.02) benign(0.038) TCGA-EE-A3AC-06 9 138903281 138903281 G C NACC2 3'UTR 0.35 TCGA-EE-A3AC-06 9 138903282 138903282 G A NACC2 3'UTR 0.37 TCGA-EE-A3AC-06 9 138905067 138905067 G A NACC2 Silent p.S411S 0.28 TCGA-EE-A3AC-06 9 139089572 139089572 C T LHX3 Missense_Mutation p.E270K 0.33 tolerated(0.14) benign(0.002) TCGA-EE-A3AC-06 9 140409837 140409837 G A PNPLA7 Missense_Mutation p.P407S 0.42 tolerated(0.56) benign(0.003) TCGA-EE-A3AC-06 9 141016315 141016315 C T CACNA1B Missense_Mutation p.S2295F 0.33 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A3AC-06 9 18889697 18889697 C T ADAMTSL1 Missense_Mutation p.R1532C 0.36 deleterious(0) possibly_damaging(0.762) TCGA-EE-A3AC-06 9 2039544 2039544 C A SMARCA2 Missense_Mutation p.P145Q 0.33 probably_damaging(0.993) TCGA-EE-A3AC-06 9 21141139 21141139 C T IFNW1 Missense_Mutation p.R144K 0.31 tolerated(0.63) benign(0.047) TCGA-EE-A3AC-06 9 23762229 23762229 C T ELAVL2 Missense_Mutation p.E2K 0.70 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-EE-A3AC-06 9 27949564 27949564 C T LINGO2 Missense_Mutation p.R369Q 0.35 deleterious(0) benign(0.312) TCGA-EE-A3AC-06 9 27949714 27949714 C T LINGO2 Missense_Mutation p.G319E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 9 27949715 27949715 C T LINGO2 Missense_Mutation p.G319R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 9 33948598 33948598 G A UBAP2 Intron 0.44 TCGA-EE-A3AC-06 9 35044877 35044877 G A C9orf131 Missense_Mutation p.G751R 0.36 tolerated(0.88) benign(0.024) TCGA-EE-A3AC-06 9 36170567 36170567 C T CCIN Silent p.T356T 0.31 TCGA-EE-A3AC-06 9 4585316 4585316 C T SLC1A1 Missense_Mutation p.R445W 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AC-06 9 5064921 5064921 C T JAK2 Silent p.F365F 0.33 TCGA-EE-A3AC-06 9 5358162 5358162 G T PLGRKT 3'UTR 0.12 TCGA-EE-A3AC-06 9 6534758 6534758 A G GLDC Missense_Mutation p.S957P 0.33 deleterious(0.03) possibly_damaging(0.556) TCGA-EE-A3AC-06 9 71628039 71628039 C T PRKACG Missense_Mutation p.D324N 0.38 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AC-06 9 71852825 71852825 C T TJP2 Silent p.G768G 0.29 TCGA-EE-A3AC-06 9 71852826 71852826 C T TJP2 Missense_Mutation p.P769S 0.30 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AC-06 9 73151427 73151427 G A TRPM3 Silent p.S1522S 0.41 TCGA-EE-A3AC-06 9 75531867 75531867 G A ALDH1A1 Missense_Mutation p.P335L 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A3AC-06 9 75531868 75531868 G A ALDH1A1 Missense_Mutation p.P335S 0.38 deleterious(0) possibly_damaging(0.85) TCGA-EE-A3AC-06 9 78682918 78682918 C T PCSK5 Missense_Mutation p.S227L 0.44 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AC-06 9 79946995 79946995 G A VPS13A Missense_Mutation p.E2021K 0.39 tolerated(0.11) benign(0.12) TCGA-EE-A3AC-06 9 95378096 95378096 G A IPPK 3'UTR 0.37 TCGA-EE-A3AC-06 9 96024118 96024118 C T WNK2 Missense_Mutation p.P1030L 0.44 unknown(0) TCGA-EE-A3AC-06 9 97062188 97062188 C T ZNF169 Silent p.P116P 0.41 TCGA-EE-A3AC-06 9 99013708 99013708 C T HSD17B3 Missense_Mutation p.E149K 0.44 tolerated(0.94) benign(0.008) TCGA-EE-A3AC-06 X 101805040 101805040 G A NXF4 RNA 0.88 TCGA-EE-A3AC-06 X 101818438 101818438 G A NXF4 RNA 0.75 TCGA-EE-A3AC-06 X 105279279 105279279 C T SERPINA7 Silent p.Q240Q 0.75 TCGA-EE-A3AC-06 X 105280593 105280593 G A SERPINA7 Missense_Mutation p.L153F 0.79 tolerated(0.22) probably_damaging(0.981) TCGA-EE-A3AC-06 X 107935983 107935983 G A COL4A5 Missense_Mutation p.A1512T 0.79 probably_damaging(0.979) TCGA-EE-A3AC-06 X 111095551 111095551 G A TRPC5 Missense_Mutation p.S451F 0.89 tolerated(0.14) probably_damaging(0.995) TCGA-EE-A3AC-06 X 114141204 114141204 C T HTR2C Silent p.F201F 0.81 TCGA-EE-A3AC-06 X 118223315 118223315 G A KIAA1210 Silent p.F626F 0.78 TCGA-EE-A3AC-06 X 122753266 122753266 C T THOC2 Missense_Mutation p.E1433K 0.75 tolerated(0.41) benign(0.219) TCGA-EE-A3AC-06 X 129506907 129506907 A T SLC25A14 Nonsense_Mutation p.K321* 0.76 TCGA-EE-A3AC-06 X 132160351 132160351 G A USP26 Missense_Mutation p.S633F 0.87 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AC-06 X 132161704 132161704 C T USP26 Missense_Mutation p.R182K 0.89 tolerated(0.37) benign(0.025) TCGA-EE-A3AC-06 X 133551252 133551252 C T PHF6 Silent p.A296A 0.76 TCGA-EE-A3AC-06 X 151124195 151124195 C T GABRE Missense_Mutation p.A308T 0.81 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AC-06 X 151303157 151303157 C T MAGEA10 Silent p.L312L 0.89 TCGA-EE-A3AC-06 X 151303172 151303172 C T MAGEA10 Silent p.R307R 0.88 TCGA-EE-A3AC-06 X 152612510 152612510 C T ZNF275 Missense_Mutation p.H123Y 0.85 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AC-06 X 153033717 153033717 C T PLXNB3 Missense_Mutation p.S390L 0.81 tolerated(0.1) benign(0.054) TCGA-EE-A3AC-06 X 15364352 15364352 C A FIGF Missense_Mutation p.R323I 0.82 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AC-06 X 1540610 1540610 G A ASMTL Nonsense_Mutation p.R396* 0.36 TCGA-EE-A3AC-06 X 1540611 1540611 G A ASMTL Silent p.I395I 0.37 TCGA-EE-A3AC-06 X 23018584 23018584 A T DDX53 Missense_Mutation p.N137I 0.80 tolerated(0.1) benign(0.096) TCGA-EE-A3AC-06 X 31089887 31089887 C T FTHL17 Missense_Mutation p.D62N 0.85 deleterious(0.02) benign(0.009) TCGA-EE-A3AC-06 X 3228200 3228200 G A MXRA5 Missense_Mutation p.P2682S 0.76 deleterious(0.04) benign(0.314) TCGA-EE-A3AC-06 X 3239556 3239556 C G MXRA5 Missense_Mutation p.R1390S 0.56 tolerated(0.73) benign(0.015) TCGA-EE-A3AC-06 X 34961468 34961468 G A FAM47B Missense_Mutation p.E174K 0.82 tolerated(1) benign(0.017) TCGA-EE-A3AC-06 X 37029039 37029039 C T FAM47C Silent p.L852L 0.76 TCGA-EE-A3AC-06 X 47307898 47307898 G A ZNF41 Missense_Mutation p.S424L 0.81 deleterious(0) possibly_damaging(0.713) TCGA-EE-A3AC-06 X 49958662 49958662 C T AKAP4 Silent p.K234K 0.74 TCGA-EE-A3AC-06 X 51641714 51641714 C T MAGED1 Missense_Mutation p.L663F 0.79 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-EE-A3AC-06 X 52826350 52826350 C T SPANXN5 Silent p.R13R 0.87 TCGA-EE-A3AC-06 X 54955515 54955515 C T TRO Silent p.S786S 0.69 TCGA-EE-A3AC-06 X 64196311 64196311 G A ZC4H2 5'UTR 0.76 TCGA-EE-A3AC-06 X 64721966 64721966 C T ZC3H12B Missense_Mutation p.P463L 0.83 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3AC-06 X 70683700 70683700 C T TAF1 Missense_Mutation p.P1829L 0.90 tolerated_low_confidence(0.1) possibly_damaging(0.615) TCGA-EE-A3AC-06 X 73962555 73962555 C T KIAA2022 Missense_Mutation p.E613K 0.80 tolerated(0.28) possibly_damaging(0.466) TCGA-EE-A3AC-06 X 78216491 78216491 C T P2RY10 Silent p.I158I 0.63 TCGA-EE-A3AC-06 X 84560875 84560875 C T POF1B Missense_Mutation p.M453I 0.87 tolerated(0.08) benign(0.041) TCGA-EE-A3AC-06 X 86890673 86890673 G A KLHL4 Missense_Mutation p.G608E 0.78 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AC-06 X 89177475 89177475 C T TGIF2LX Missense_Mutation p.H131Y 0.73 deleterious(0.02) benign(0.068) TCGA-EE-A3AC-06 Y 14848359 14848359 C T USP9Y Missense_Mutation p.S347F 0.94 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AD-06 10 106075359 106075359 G A ITPRIP Missense_Mutation p.R151W 0.54 tolerated(0.08) possibly_damaging(0.899) TCGA-EE-A3AD-06 10 117059641 117059641 C T ATRNL1 Missense_Mutation p.P838L 0.59 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A3AD-06 10 124036318 124036318 C T BTBD16 Silent p.L11L 0.31 TCGA-EE-A3AD-06 10 15879309 15879309 G A FAM188A Missense_Mutation p.S157L 0.41 tolerated(0.22) benign(0.129) TCGA-EE-A3AD-06 10 18807280 18807280 C T CACNB2 Missense_Mutation p.P274S 0.38 deleterious(0) possibly_damaging(0.84) TCGA-EE-A3AD-06 10 21169763 21169763 T G NEBL Missense_Mutation p.E147A 0.43 deleterious(0) benign(0.002) TCGA-EE-A3AD-06 10 24874587 24874587 G T ARHGAP21 Missense_Mutation p.S1544Y 0.50 deleterious(0) probably_damaging(0.975) TCGA-EE-A3AD-06 10 29776190 29776190 C G SVIL Missense_Mutation p.A1463P 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AD-06 10 34673110 34673110 A G PARD3 Silent p.N321N 0.35 TCGA-EE-A3AD-06 10 46121451 46121451 T G ZFAND4 Missense_Mutation p.E607A 0.43 deleterious(0.03) possibly_damaging(0.708) TCGA-EE-A3AD-06 10 48387843 48387843 G A RBP3 Missense_Mutation p.P1012L 0.46 tolerated(0.1) possibly_damaging(0.713) TCGA-EE-A3AD-06 10 50374853 50374853 G A C10orf128 Intron 0.48 TCGA-EE-A3AD-06 10 50531317 50531317 G A C10orf71 Missense_Mutation p.A243T 0.45 tolerated(0.21) benign(0.011) TCGA-EE-A3AD-06 10 54528095 54528095 G A MBL2 Silent p.F183F 0.32 TCGA-EE-A3AD-06 10 6054776 6054776 C T IL2RA 3'UTR 0.62 TCGA-EE-A3AD-06 10 61062601 61062601 G A FAM13C Missense_Mutation p.S156L 0.45 tolerated_low_confidence(0.13) benign(0.001) TCGA-EE-A3AD-06 10 61443967 61443967 C T SLC16A9 Missense_Mutation p.G28E 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 10 61868653 61868653 C T ANK3 Missense_Mutation p.M1036I 0.36 possibly_damaging(0.72) TCGA-EE-A3AD-06 10 67862938 67862938 G A CTNNA3 Nonsense_Mutation p.Q652* 0.24 TCGA-EE-A3AD-06 10 72434327 72434327 G A ADAMTS14 Missense_Mutation p.G33E 0.38 tolerated(0.07) benign(0.12) TCGA-EE-A3AD-06 10 76074471 76074471 G A ADK Missense_Mutation p.G81S 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 10 79784394 79784394 C A POLR3A Silent p.V186V 0.45 TCGA-EE-A3AD-06 10 82122713 82122713 G A DYDC2 Missense_Mutation p.E66K 0.46 tolerated(0.37) benign(0) TCGA-EE-A3AD-06 10 95147624 95147624 G A MYOF Missense_Mutation p.T543I 0.40 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A3AD-06 10 95147625 95147625 T A MYOF Missense_Mutation p.T543S 0.39 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A3AD-06 10 95400235 95400235 G A PDE6C Missense_Mutation p.R553K 0.44 tolerated(1) benign(0.021) TCGA-EE-A3AD-06 10 97366428 97366428 G A ALDH18A1 3'UTR 0.42 TCGA-EE-A3AD-06 11 108203567 108203567 C T ATM Missense_Mutation p.L2623F 0.97 deleterious(0) probably_damaging(0.917) TCGA-EE-A3AD-06 11 117109672 117109672 C T RNF214 Missense_Mutation p.P155S 0.97 tolerated_low_confidence(0.5) benign(0.446) TCGA-EE-A3AD-06 11 119003888 119003888 G A HINFP Silent p.K366K 0.90 TCGA-EE-A3AD-06 11 1213079 1213079 G A MUC5AC RNA 0.24 TCGA-EE-A3AD-06 11 123887186 123887186 G A OR10G4 Missense_Mutation p.R302K 0.97 tolerated(0.39) benign(0.001) TCGA-EE-A3AD-06 11 124266609 124266609 G A OR8B3 Silent p.T213T 0.91 TCGA-EE-A3AD-06 11 125359592 125359592 G A FEZ1 Nonsense_Mutation p.Q28* 0.84 TCGA-EE-A3AD-06 11 134014821 134014821 A T JAM3 Missense_Mutation p.T182S 0.96 tolerated(0.67) benign(0.158) TCGA-EE-A3AD-06 11 134158708 134158708 C T GLB1L3 Missense_Mutation p.P218L 1.00 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 11 18303523 18303523 G A HPS5 Silent p.I1101I 0.38 TCGA-EE-A3AD-06 11 1904732 1904732 C A LSP1 Missense_Mutation p.P275Q 0.10 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EE-A3AD-06 11 2185590 2185590 G A TH Missense_Mutation p.S487F 0.40 deleterious(0.01) possibly_damaging(0.57) TCGA-EE-A3AD-06 11 26742962 26742962 G A SLC5A12 Silent p.L100L 0.48 TCGA-EE-A3AD-06 11 34162704 34162704 C T NAT10 Silent p.P887P 0.47 TCGA-EE-A3AD-06 11 4411508 4411508 C T TRIM21 Silent p.G44G 0.37 TCGA-EE-A3AD-06 11 45267998 45267998 G A SYT13 Silent p.L304L 0.40 TCGA-EE-A3AD-06 11 4566853 4566853 C T OR52M1 Missense_Mutation p.R145C 0.21 deleterious(0.01) benign(0.009) TCGA-EE-A3AD-06 11 46419074 46419074 T C AMBRA1 Missense_Mutation p.N1185D 0.39 deleterious_low_confidence(0) benign(0.004) TCGA-EE-A3AD-06 11 46797835 46797835 G A CKAP5 Silent p.L987L 0.52 TCGA-EE-A3AD-06 11 4703040 4703040 C T OR51E2 Missense_Mutation p.R301Q 0.43 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AD-06 11 55433174 55433174 G A OR4C6 Missense_Mutation p.D178N 0.62 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A3AD-06 11 55905177 55905177 G A OR8J3 Silent p.F6F 0.46 TCGA-EE-A3AD-06 11 56185028 56185028 C T OR5R1 Silent p.R227R 0.52 TCGA-EE-A3AD-06 11 57317531 57317531 G A SMTNL1 Silent p.Q495Q 0.48 TCGA-EE-A3AD-06 11 58477446 58477446 C T GLYAT Missense_Mutation p.M228I 0.44 tolerated(0.49) benign(0.006) TCGA-EE-A3AD-06 11 591435 591435 C T PHRF1 Nonsense_Mutation p.R158* 0.31 TCGA-EE-A3AD-06 11 6023564 6023564 G A OR56A4 Missense_Mutation p.S272F 0.52 deleterious(0.01) probably_damaging(0.945) TCGA-EE-A3AD-06 11 6023602 6023602 C T OR56A4 Nonsense_Mutation p.W259* 0.47 TCGA-EE-A3AD-06 11 60687340 60687340 C T TMEM109 Nonsense_Mutation p.R59* 0.53 TCGA-EE-A3AD-06 11 61505223 61505223 C T DAGLA Missense_Mutation p.P527S 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AD-06 11 61511196 61511196 C T DAGLA Silent p.S788S 0.41 TCGA-EE-A3AD-06 11 61643441 61643441 G A FADS3 Missense_Mutation p.P390S 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 11 62985075 62985075 G A SLC22A25 Silent p.I213I 0.50 TCGA-EE-A3AD-06 11 63174107 63174107 G A SLC22A9 Missense_Mutation p.M404I 0.41 tolerated(0.31) benign(0.01) TCGA-EE-A3AD-06 11 66008961 66008961 C T PACS1 Silent p.P831P 0.36 TCGA-EE-A3AD-06 11 6638091 6638091 C G TPP1 Splice_Site p.X230_splice 0.37 TCGA-EE-A3AD-06 11 67402374 67402374 G A TBX10 Missense_Mutation p.P97L 0.27 deleterious(0) benign(0.057) TCGA-EE-A3AD-06 11 67402375 67402375 G A TBX10 Missense_Mutation p.P97S 0.29 tolerated(0.09) benign(0.024) TCGA-EE-A3AD-06 11 7083677 7083677 G A NLRP14 Missense_Mutation p.G973E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 11 73372767 73372767 C T PLEKHB1 3'UTR 0.50 TCGA-EE-A3AD-06 11 73850731 73850731 G A C2CD3 Missense_Mutation p.P209L 0.40 tolerated(0.06) benign(0.238) TCGA-EE-A3AD-06 11 7712505 7712505 T G OVCH2 Missense_Mutation p.K545T 0.47 tolerated(0.48) benign(0.02) TCGA-EE-A3AD-06 11 84028108 84028108 C T DLG2 Intron 0.95 TCGA-EE-A3AD-06 11 92531727 92531727 C T FAT3 Missense_Mutation p.H1850Y 0.90 probably_damaging(0.985) TCGA-EE-A3AD-06 12 101794879 101794879 T A ARL1 Silent p.R99R 0.36 TCGA-EE-A3AD-06 12 104086619 104086619 C T STAB2 Silent p.V1109V 0.65 TCGA-EE-A3AD-06 12 104131519 104131519 G A STAB2 Silent p.L1886L 0.67 TCGA-EE-A3AD-06 12 111772438 111772438 C T CUX2 Silent p.I1040I 0.29 TCGA-EE-A3AD-06 12 111893892 111893892 G A ATXN2 Missense_Mutation p.H1229Y 0.68 probably_damaging(0.995) TCGA-EE-A3AD-06 12 117749380 117749380 G A NOS1 Missense_Mutation p.S248L 0.19 tolerated_low_confidence(0.23) benign(0.001) TCGA-EE-A3AD-06 12 117768500 117768500 G A NOS1 Silent p.P125P 0.65 TCGA-EE-A3AD-06 12 118517278 118517278 G A VSIG10 Silent p.I266I 0.67 TCGA-EE-A3AD-06 12 119942879 119942879 G A CCDC60 Silent p.K218K 0.59 TCGA-EE-A3AD-06 12 120535157 120535157 C T RAB35 Silent p.E166E 0.22 TCGA-EE-A3AD-06 12 124841263 124841263 G A NCOR2 Missense_Mutation p.P1056S 0.64 benign(0.202) TCGA-EE-A3AD-06 12 132632303 132632303 C T NOC4L Silent p.A193A 0.58 TCGA-EE-A3AD-06 12 14959457 14959457 G A SMCO3 Missense_Mutation p.S53F 0.25 tolerated(0.71) benign(0.002) TCGA-EE-A3AD-06 12 18234137 18234137 C T RERGL Silent p.R202R 0.32 TCGA-EE-A3AD-06 12 18237580 18237580 G A RERGL Missense_Mutation p.S69F 0.17 tolerated(0.45) benign(0.004) TCGA-EE-A3AD-06 12 22678583 22678583 G A C2CD5 Nonsense_Mutation p.R136* 0.33 TCGA-EE-A3AD-06 12 31600507 31600507 G A DENND5B Missense_Mutation p.S609F 0.29 tolerated(0.24) possibly_damaging(0.781) TCGA-EE-A3AD-06 12 43896194 43896194 C T ADAMTS20 Missense_Mutation p.E210K 0.61 tolerated(1) benign(0.001) TCGA-EE-A3AD-06 12 49317594 49317594 C T FKBP11 Missense_Mutation p.G120E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 12 50146759 50146759 C T TMBIM6 Silent p.T78T 0.55 TCGA-EE-A3AD-06 12 50869683 50869683 C T LARP4 3'UTR 0.41 TCGA-EE-A3AD-06 12 51065067 51065067 A G DIP2B Missense_Mutation p.N176D 0.61 tolerated(0.38) benign(0.001) TCGA-EE-A3AD-06 12 52886863 52886863 G A KRT6A Missense_Mutation p.S37F 0.19 deleterious(0) unknown(0) TCGA-EE-A3AD-06 12 55251990 55251990 G A MUCL1 Nonsense_Mutation p.W79* 0.71 TCGA-EE-A3AD-06 12 55945204 55945204 C T OR6C4 Missense_Mutation p.S65F 0.23 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-EE-A3AD-06 12 56031197 56031197 C T OR10P1 Silent p.I174I 0.20 TCGA-EE-A3AD-06 12 58145430 58145430 C A CDK4 Missense_Mutation p.R24L 0.76 deleterious(0) benign(0.232) TCGA-EE-A3AD-06 12 6747346 6747346 C T ACRBP 3'UTR 0.24 TCGA-EE-A3AD-06 12 70946681 70946681 G A PTPRB Missense_Mutation p.P1755S 0.57 tolerated(0.15) benign(0.142) TCGA-EE-A3AD-06 12 82752008 82752008 G A CCDC59 Missense_Mutation p.R50C 0.26 deleterious(0) probably_damaging(0.939) TCGA-EE-A3AD-06 12 96379724 96379724 G A HAL Missense_Mutation p.R390C 0.71 deleterious(0.01) benign(0.12) TCGA-EE-A3AD-06 13 20797560 20797560 G A GJB6 Silent p.I20I 0.36 TCGA-EE-A3AD-06 14 19378043 19378043 C T OR11H12 Silent p.I150I 0.35 TCGA-EE-A3AD-06 14 20248864 20248864 G A OR4M1 Missense_Mutation p.R128Q 0.37 tolerated(0.14) benign(0.011) TCGA-EE-A3AD-06 14 20248867 20248867 C T OR4M1 Missense_Mutation p.P129L 0.60 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AD-06 14 20871927 20871927 C T TEP1 Silent p.R383R 0.43 TCGA-EE-A3AD-06 14 22309797 22309797 G A TRAV12-1 Missense_Mutation p.D60N 0.39 tolerated(0.22) benign(0.092) TCGA-EE-A3AD-06 14 22466309 22466309 G A TRAV17 Missense_Mutation p.R80K 0.53 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3AD-06 14 23938908 23938908 G A NGDN 5'UTR 0.42 TCGA-EE-A3AD-06 14 24884614 24884614 C T NYNRIN Missense_Mutation p.S1220F 0.49 deleterious(0) possibly_damaging(0.83) TCGA-EE-A3AD-06 14 24884732 24884732 C T NYNRIN Silent p.S1259S 0.62 TCGA-EE-A3AD-06 14 31774132 31774132 G A RP11-596D21.1 3'Flank 0.50 TCGA-EE-A3AD-06 14 33293340 33293340 G A AKAP6 Silent p.G2107G 0.52 TCGA-EE-A3AD-06 14 52793975 52793975 G A PTGER2 Missense_Mutation p.E294K 0.41 tolerated(0.19) benign(0.008) TCGA-EE-A3AD-06 14 62567163 62567163 G A SYT16 Missense_Mutation p.R559H 0.50 deleterious(0.02) benign(0.159) TCGA-EE-A3AD-06 14 62567164 62567164 T G SYT16 Silent p.R559R 0.56 TCGA-EE-A3AD-06 14 63417088 63417088 C T KCNH5 Missense_Mutation p.E378K 0.58 tolerated(0.28) possibly_damaging(0.57) TCGA-EE-A3AD-06 14 65233368 65233368 G A SPTB Intron 0.59 TCGA-EE-A3AD-06 14 67671401 67671401 C T FAM71D Silent p.A169A 0.41 TCGA-EE-A3AD-06 14 70633483 70633483 G A SLC8A3 Silent p.L553L 0.33 TCGA-EE-A3AD-06 14 74537937 74537937 G A ALDH6A1 Missense_Mutation p.P231S 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 14 74970718 74970718 G A LTBP2 Missense_Mutation p.P1498L 0.57 tolerated(0.17) benign(0.007) TCGA-EE-A3AD-06 14 77255594 77255594 C T ANGEL1 Missense_Mutation p.G664R 0.46 tolerated(0.1) benign(0.085) TCGA-EE-A3AD-06 14 77929095 77929095 C T AHSA1 Silent p.L155L 0.46 TCGA-EE-A3AD-06 14 90650588 90650588 C T KCNK13 Silent p.I156I 0.42 TCGA-EE-A3AD-06 14 92609402 92609402 C T CPSF2 Missense_Mutation p.P302S 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 14 94754765 94754765 G A SERPINA10 Missense_Mutation p.R284C 0.47 deleterious(0) possibly_damaging(0.881) TCGA-EE-A3AD-06 14 95080940 95080940 G A SERPINA3 Silent p.V54V 0.46 TCGA-EE-A3AD-06 14 99642133 99642133 C T BCL11B Missense_Mutation p.R347Q 0.60 deleterious(0.03) possibly_damaging(0.685) TCGA-EE-A3AD-06 15 22368636 22368636 C T OR4M2 Missense_Mutation p.P21S 0.24 tolerated(0.55) benign(0) TCGA-EE-A3AD-06 15 24921390 24921390 C T NPAP1 Silent p.L126L 0.44 TCGA-EE-A3AD-06 15 24922455 24922455 G A NPAP1 Missense_Mutation p.G481R 0.49 tolerated(0.05) probably_damaging(0.93) TCGA-EE-A3AD-06 15 25351692 25351692 G A SNORD116-29 RNA 0.62 TCGA-EE-A3AD-06 15 25472104 25472104 C T SNORD115-33 5'Flank 0.50 TCGA-EE-A3AD-06 15 28502305 28502305 G A HERC2 Missense_Mutation p.R807W 0.58 probably_damaging(0.928) TCGA-EE-A3AD-06 15 34395873 34395873 G A PGBD4 Missense_Mutation p.E381K 0.45 tolerated(0.85) benign(0.099) TCGA-EE-A3AD-06 15 55929375 55929375 G A PRTG Silent p.H872H 0.52 TCGA-EE-A3AD-06 15 65490536 65490536 C T CILP Silent p.V696V 0.33 TCGA-EE-A3AD-06 15 73622119 73622119 C T HCN4 Missense_Mutation p.G462E 0.39 deleterious(0.02) unknown(0) TCGA-EE-A3AD-06 15 75091219 75091219 C T CSK Missense_Mutation p.P61L 0.47 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AD-06 15 79749371 79749371 C T KIAA1024 Silent p.P294P 0.43 TCGA-EE-A3AD-06 15 81201497 81201497 G A KIAA1199 Silent p.Q549Q 0.54 TCGA-EE-A3AD-06 15 83346471 83346471 G A AP3B2 Missense_Mutation p.R444C 0.60 deleterious(0.02) possibly_damaging(0.682) TCGA-EE-A3AD-06 15 86311557 86311557 G A KLHL25 Silent p.F495F 0.38 TCGA-EE-A3AD-06 16 11369729 11369729 C T PRM2 3'UTR 0.52 TCGA-EE-A3AD-06 16 1306606 1306606 C T TPSD1 Missense_Mutation p.R58C 0.45 tolerated(0.17) benign(0.022) TCGA-EE-A3AD-06 16 14354990 14354990 C T MKL2 Missense_Mutation p.P947S 0.40 tolerated(0.14) benign(0.003) TCGA-EE-A3AD-06 16 19516342 19516342 C T GDE1 Missense_Mutation p.G237R 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AD-06 16 202988 202988 C T HBZ Missense_Mutation p.T27I 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-EE-A3AD-06 16 20387405 20387405 G A PDILT Silent p.I176I 0.31 TCGA-EE-A3AD-06 16 20491949 20491949 G A ACSM2A Missense_Mutation p.D446N 0.50 deleterious(0) possibly_damaging(0.907) TCGA-EE-A3AD-06 16 20554530 20554530 C T ACSM2B Missense_Mutation p.D446N 0.18 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AD-06 16 20634825 20634825 C T ACSM1 Missense_Mutation p.E573K 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 16 23400113 23400113 G A COG7 3'UTR 0.33 TCGA-EE-A3AD-06 16 29124378 29124378 G A RP11-426C22.5 5'Flank 0.49 TCGA-EE-A3AD-06 16 29923186 29923186 G A KCTD13 Silent p.P169P 0.41 TCGA-EE-A3AD-06 16 31309201 31309201 G A ITGAM Missense_Mutation p.E546K 0.51 deleterious(0) probably_damaging(0.935) TCGA-EE-A3AD-06 16 3306433 3306433 T C MEFV Missense_Mutation p.K52R 0.49 tolerated(0.13) benign(0.4) TCGA-EE-A3AD-06 16 4810525 4810525 G A ZNF500 Missense_Mutation p.P243L 0.42 tolerated(0.73) benign(0.404) TCGA-EE-A3AD-06 16 49433070 49433070 C T C16orf78 Missense_Mutation p.R227W 0.47 deleterious(0) possibly_damaging(0.877) TCGA-EE-A3AD-06 16 50830479 50830479 C T CYLD 3'UTR 0.50 TCGA-EE-A3AD-06 16 51173808 51173808 G A SALL1 Silent p.F775F 0.43 TCGA-EE-A3AD-06 16 5135648 5135648 C G FAM86A Silent p.L326L 0.41 TCGA-EE-A3AD-06 16 55517983 55517983 C T MMP2 Missense_Mutation p.R146C 0.36 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AD-06 16 56918052 56918052 G A SLC12A3 Nonsense_Mutation p.W587* 0.50 TCGA-EE-A3AD-06 16 57416246 57416246 G A CX3CL1 Missense_Mutation p.G166R 0.40 deleterious(0.03) benign(0.023) TCGA-EE-A3AD-06 16 57921948 57921948 C A CNGB1 Missense_Mutation p.K1091N 0.45 deleterious(0.01) benign(0.184) TCGA-EE-A3AD-06 16 58031190 58031190 G A ZNF319 Missense_Mutation p.P327L 0.40 tolerated(0.08) possibly_damaging(0.821) TCGA-EE-A3AD-06 16 58583759 58583759 C T CNOT1 Nonsense_Mutation p.W1129* 0.40 TCGA-EE-A3AD-06 16 61851400 61851400 G A CDH8 Silent p.I420I 0.64 TCGA-EE-A3AD-06 16 64981498 64981498 C T CDH11 3'UTR 0.51 TCGA-EE-A3AD-06 16 70926280 70926280 G A HYDIN Missense_Mutation p.P3134L 0.19 probably_damaging(0.958) TCGA-EE-A3AD-06 16 72831252 72831252 G A ZFHX3 Missense_Mutation p.L1777F 0.41 probably_damaging(0.979) TCGA-EE-A3AD-06 16 75563490 75563490 G A CHST5 Missense_Mutation p.R265C 0.47 deleterious(0) possibly_damaging(0.901) TCGA-EE-A3AD-06 16 77353836 77353836 G A ADAMTS18 Silent p.F814F 0.40 TCGA-EE-A3AD-06 16 775578 775578 G A CCDC78 Silent p.I90I 0.48 TCGA-EE-A3AD-06 16 824857 824857 G A MSLNL Missense_Mutation p.A572V 0.41 possibly_damaging(0.74) TCGA-EE-A3AD-06 16 89292028 89292028 G A ZNF778 Missense_Mutation p.E104K 0.61 tolerated(0.59) benign(0.351) TCGA-EE-A3AD-06 16 89977544 89977544 C T TCF25 Silent p.N643N 0.47 TCGA-EE-A3AD-06 17 10321977 10321977 G A MYH8 Nonsense_Mutation p.Q166* 0.45 TCGA-EE-A3AD-06 17 10538846 10538846 G A MYH3 Missense_Mutation p.S1337F 0.42 deleterious(0.01) benign(0.361) TCGA-EE-A3AD-06 17 11523065 11523065 G A DNAH9 Silent p.L439L 0.51 TCGA-EE-A3AD-06 17 26696553 26696553 C T VTN Silent p.K168K 0.41 TCGA-EE-A3AD-06 17 27889940 27889940 G A ABHD15 Missense_Mutation p.A349V 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AD-06 17 34236443 34236443 C T AC015849.16 RNA 0.29 TCGA-EE-A3AD-06 17 3494570 3494570 G A SHPK Missense_Mutation p.A121V 0.51 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A3AD-06 17 3524612 3524612 G A SHPK Missense_Mutation p.P248S 0.50 deleterious(0) possibly_damaging(0.794) TCGA-EE-A3AD-06 17 38131159 38131159 G A GSDMA Missense_Mutation p.G305R 0.43 tolerated(0.89) benign(0.097) TCGA-EE-A3AD-06 17 38430092 38430092 C T WIPF2 Missense_Mutation p.P341S 0.64 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AD-06 17 39723534 39723534 G A KRT9 Silent p.S621S 0.55 TCGA-EE-A3AD-06 17 40716772 40716772 G A COASY Missense_Mutation p.G394S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 17 40822654 40822654 G A PLEKHH3 Silent p.H497H 0.37 TCGA-EE-A3AD-06 17 40990768 40990768 C T PSME3 Silent p.L155L 0.50 TCGA-EE-A3AD-06 17 42333147 42333147 C T SLC4A1 Missense_Mutation p.G565D 0.49 tolerated(0.26) benign(0.005) TCGA-EE-A3AD-06 17 48604769 48604769 G A MYCBPAP Missense_Mutation p.C807Y 0.41 deleterious(0) possibly_damaging(0.576) TCGA-EE-A3AD-06 17 48733370 48733370 G A ABCC3 Splice_Site p.X74_splice 0.52 TCGA-EE-A3AD-06 17 48734505 48734505 C T ABCC3 Silent p.I149I 0.51 TCGA-EE-A3AD-06 17 4883054 4883054 G A CAMTA2 Silent p.I544I 0.42 TCGA-EE-A3AD-06 17 50149694 50149694 C T CA10 Missense_Mutation p.G41R 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 17 56676714 56676714 C T TEX14 Silent p.L670L 0.41 TCGA-EE-A3AD-06 17 59988919 59988919 G A INTS2 Missense_Mutation p.R314W 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 17 60342475 60342475 G A TBC1D3P2 3'Flank 0.21 TCGA-EE-A3AD-06 17 6338477 6338477 G A AIPL1 5'UTR 0.36 TCGA-EE-A3AD-06 17 64216794 64216794 C T APOH Missense_Mutation p.G161E 0.33 deleterious(0.02) benign(0.14) TCGA-EE-A3AD-06 17 68129477 68129477 C T KCNJ16 Nonsense_Mutation p.Q417* 0.38 TCGA-EE-A3AD-06 17 7010400 7010400 G A ASGR2 Silent p.S194S 0.43 TCGA-EE-A3AD-06 17 7222489 7222489 G A NEURL4 Silent p.S1188S 0.39 TCGA-EE-A3AD-06 17 73389691 73389691 A - GRB2 Frame_Shift_Del p.Y7Mfs*11 0.33 TCGA-EE-A3AD-06 17 7366122 7366122 G A ZBTB4 Nonsense_Mutation p.R727* 0.53 TCGA-EE-A3AD-06 17 7366123 7366123 G A ZBTB4 Silent p.H726H 0.52 TCGA-EE-A3AD-06 17 74134192 74134192 G C FOXJ1 Missense_Mutation p.R170G 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 17 76045287 76045287 G T TNRC6C Silent p.A48A 0.43 TCGA-EE-A3AD-06 17 76568964 76568964 G A DNAH17 Silent p.L120L 0.47 TCGA-EE-A3AD-06 17 78820345 78820345 C T RPTOR Missense_Mutation p.P429S 0.38 deleterious(0.01) benign(0.305) TCGA-EE-A3AD-06 18 12009942 12009942 G A IMPA2 Silent p.T97T 0.31 TCGA-EE-A3AD-06 18 13884916 13884916 C T MC2R Missense_Mutation p.R201Q 0.33 deleterious(0.05) possibly_damaging(0.603) TCGA-EE-A3AD-06 18 28660275 28660275 C T DSC2 Missense_Mutation p.G436D 0.38 deleterious(0.01) benign(0.35) TCGA-EE-A3AD-06 18 28722027 28722027 C T DSC1 Missense_Mutation p.E399K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AD-06 18 32833469 32833469 G C ZSCAN30 Missense_Mutation p.T477R 0.33 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A3AD-06 18 3457419 3457419 G A TGIF1 Silent p.K229K 0.33 TCGA-EE-A3AD-06 18 3534283 3534283 G A DLGAP1 Silent p.F796F 0.35 TCGA-EE-A3AD-06 18 47014931 47014931 G A RPL17 Silent p.S171S 0.33 TCGA-EE-A3AD-06 18 47812604 47812604 G A CXXC1 Missense_Mutation p.R83C 0.50 deleterious(0) possibly_damaging(0.653) TCGA-EE-A3AD-06 18 56963965 56963965 T G CPLX4 Missense_Mutation p.K150Q 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AD-06 18 63477014 63477014 C T CDH7 Silent p.F95F 0.50 TCGA-EE-A3AD-06 18 74963143 74963143 C T GALR1 Silent p.L213L 0.35 TCGA-EE-A3AD-06 19 10090695 10090695 C T COL5A3 Missense_Mutation p.G878E 0.43 unknown(0) TCGA-EE-A3AD-06 19 15132169 15132169 C T CCDC105 Silent p.C293C 0.33 TCGA-EE-A3AD-06 19 15756619 15756619 G A CYP4F3 Missense_Mutation p.A97T 0.30 deleterious(0.02) benign(0.013) TCGA-EE-A3AD-06 19 16942413 16942413 T C SIN3B Silent p.I112I 0.35 TCGA-EE-A3AD-06 19 17212878 17212878 C T MYO9B Silent p.T117T 0.48 TCGA-EE-A3AD-06 19 17660308 17660308 G A FAM129C Silent p.L605L 0.48 TCGA-EE-A3AD-06 19 17994489 17994489 G A SLC5A5 Splice_Site p.X415_splice 0.62 TCGA-EE-A3AD-06 19 17994490 17994490 G A SLC5A5 Missense_Mutation p.G415S 0.61 deleterious(0.05) probably_damaging(0.969) TCGA-EE-A3AD-06 19 18377203 18377203 G A KIAA1683 Missense_Mutation p.P383S 0.53 tolerated(0.14) benign(0.272) TCGA-EE-A3AD-06 19 19339337 19339337 G A NCAN Missense_Mutation p.E970K 0.59 tolerated(0.1) benign(0.004) TCGA-EE-A3AD-06 19 22157023 22157023 G A ZNF208 Silent p.I271I 0.39 TCGA-EE-A3AD-06 19 3275854 3275854 G A CELF5 Missense_Mutation p.R132K 0.62 tolerated(0.07) benign(0) TCGA-EE-A3AD-06 19 3544626 3544626 G A MFSD12 Intron 0.60 TCGA-EE-A3AD-06 19 36231322 36231322 G A IGFLR1 Missense_Mutation p.P101S 1.00 tolerated(0.48) benign(0.016) TCGA-EE-A3AD-06 19 40580950 40580950 G A ZNF780A Missense_Mutation p.H468Y 0.90 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 19 41383128 41383128 C T CYP2A7 Silent p.K376K 0.98 TCGA-EE-A3AD-06 19 42566912 42566912 C T GRIK5 Missense_Mutation p.E114K 0.97 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AD-06 19 42930619 42930619 C T LIPE Nonsense_Mutation p.W228* 0.98 TCGA-EE-A3AD-06 19 45175912 45175912 C T CEACAM19 Missense_Mutation p.L34F 0.92 tolerated(0.13) possibly_damaging(0.822) TCGA-EE-A3AD-06 19 46303732 46303734 GCC CAA RSPH6A Missense_Mutation p.WP629FA 0.13 TCGA-EE-A3AD-06 19 51412004 51412004 G A KLK4 Silent p.S102S 0.95 TCGA-EE-A3AD-06 19 52793753 52793753 C T ZNF766 Missense_Mutation p.R237C 0.97 deleterious(0) benign(0.333) TCGA-EE-A3AD-06 19 54849894 54849894 T C LILRA4 Missense_Mutation p.N43S 0.96 tolerated(1) benign(0) TCGA-EE-A3AD-06 19 55286808 55286808 G A KIR2DL1 Missense_Mutation p.G188S 0.96 deleterious(0.04) benign(0.19) TCGA-EE-A3AD-06 19 6719409 6719409 G A C3 Missense_Mutation p.S27F 0.31 deleterious(0) possibly_damaging(0.56) TCGA-EE-A3AD-06 19 6937361 6937361 C T EMR1 Missense_Mutation p.T830I 0.42 deleterious(0.03) possibly_damaging(0.739) TCGA-EE-A3AD-06 19 7606272 7606272 C T PNPLA6 Silent p.F328F 0.41 TCGA-EE-A3AD-06 19 872062 872062 C A MED16 Missense_Mutation p.M654I 0.35 tolerated(0.08) benign(0.072) TCGA-EE-A3AD-06 19 9085008 9085008 C T MUC16 Silent p.K2269K 0.56 TCGA-EE-A3AD-06 19 9213650 9213650 C T OR7G2 Silent p.R111R 0.47 TCGA-EE-A3AD-06 19 9271318 9271318 C T ZNF317 Missense_Mutation p.P333S 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3AD-06 19 9271319 9271319 C T ZNF317 Missense_Mutation p.P333L 0.28 deleterious(0.04) benign(0.363) TCGA-EE-A3AD-06 1 101705604 101705604 C T S1PR1 Missense_Mutation p.S355L 0.73 tolerated(0.11) possibly_damaging(0.548) TCGA-EE-A3AD-06 1 11102948 11102948 G A MASP2 Silent p.I291I 0.66 TCGA-EE-A3AD-06 1 111435097 111435097 T A CD53 Missense_Mutation p.V65E 0.25 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AD-06 1 111493993 111493993 G A LRIF1 Nonsense_Mutation p.Q505* 0.34 TCGA-EE-A3AD-06 1 120342428 120342428 C T REG4 Missense_Mutation p.E75K 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AD-06 1 12837763 12837763 G T PRAMEF12 3'UTR 0.32 TCGA-EE-A3AD-06 1 144921851 144921851 G A PDE4DIP Missense_Mutation p.S393F 0.20 deleterious(0.02) possibly_damaging(0.908) TCGA-EE-A3AD-06 1 14925446 14925446 C T KAZN 5'UTR 0.46 TCGA-EE-A3AD-06 1 152187393 152187393 T C HRNR Missense_Mutation p.S2238G 0.16 unknown(0) TCGA-EE-A3AD-06 1 152382272 152382272 C T CRNN Missense_Mutation p.G429E 0.59 tolerated(0.06) possibly_damaging(0.53) TCGA-EE-A3AD-06 1 152538652 152538652 T C LCE3E Silent p.Q11Q 0.40 TCGA-EE-A3AD-06 1 156843593 156843593 C T NTRK1 Missense_Mutation p.T340I 0.48 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AD-06 1 157667094 157667094 G A FCRL3 Missense_Mutation p.S227F 0.46 tolerated(0.09) possibly_damaging(0.861) TCGA-EE-A3AD-06 1 158297931 158297931 G A CD1B 3'UTR 0.44 TCGA-EE-A3AD-06 1 158450621 158450621 A G OR10R2 Silent p.Q318Q 0.15 TCGA-EE-A3AD-06 1 158735546 158735546 C T OR6N1 Silent p.G309G 0.42 TCGA-EE-A3AD-06 1 159043301 159043301 G A AIM2 5'UTR 0.49 TCGA-EE-A3AD-06 1 159906692 159906692 G A IGSF9 Missense_Mutation p.P136L 0.48 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AD-06 1 160313098 160313098 C T NCSTN 5'UTR 0.57 TCGA-EE-A3AD-06 1 160801213 160801213 C T CD244 Missense_Mutation p.G346E 0.51 deleterious(0.02) benign(0.35) TCGA-EE-A3AD-06 1 161989878 161989878 T C OLFML2B Missense_Mutation p.Q90R 0.52 tolerated(1) benign(0.002) TCGA-EE-A3AD-06 1 17029238 17029238 C T ESPNP RNA 0.08 TCGA-EE-A3AD-06 1 17603320 17603320 G A PADI3 Missense_Mutation p.E502K 0.69 deleterious(0.04) benign(0.091) TCGA-EE-A3AD-06 1 176833599 176833599 G A ASTN1 Missense_Mutation p.L1236F 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3AD-06 1 176833600 176833600 G A ASTN1 Silent p.L1235L 0.39 TCGA-EE-A3AD-06 1 180756930 180756930 G A XPR1 Missense_Mutation p.E55K 0.53 deleterious(0.01) possibly_damaging(0.826) TCGA-EE-A3AD-06 1 183072500 183072500 C T LAMC1 Silent p.F152F 0.40 TCGA-EE-A3AD-06 1 183072501 183072501 C T LAMC1 Missense_Mutation p.H153Y 0.40 deleterious(0.01) benign(0.094) TCGA-EE-A3AD-06 1 196438157 196438157 C T KCNT2 Silent p.L142L 0.45 TCGA-EE-A3AD-06 1 196874292 196874292 C T CFHR4 Missense_Mutation p.S103F 0.29 tolerated(0.12) probably_damaging(0.986) TCGA-EE-A3AD-06 1 196928248 196928248 T C CFHR2 3'UTR 0.56 TCGA-EE-A3AD-06 1 204433651 204433651 G A PIK3C2B Silent p.L372L 0.58 TCGA-EE-A3AD-06 1 204438448 204438448 G A PIK3C2B Silent p.P161P 0.62 TCGA-EE-A3AD-06 1 205633709 205633713 AGGTT - SLC45A3 Frame_Shift_Del p.T25Wfs*50 0.41 TCGA-EE-A3AD-06 1 207143496 207143496 G A FCAMR 5'UTR 0.57 TCGA-EE-A3AD-06 1 207641906 207641906 C T CR2 Silent p.I160I 0.55 TCGA-EE-A3AD-06 1 212799484 212799484 A T FAM71A Missense_Mutation p.E422V 0.30 deleterious(0.01) possibly_damaging(0.601) TCGA-EE-A3AD-06 1 214209048 214209048 C T PROX1 Silent p.A695A 0.41 TCGA-EE-A3AD-06 1 216246251 216246251 C T USH2A Missense_Mutation p.R1946Q 0.29 possibly_damaging(0.831) TCGA-EE-A3AD-06 1 227947011 227947011 G A SNAP47 Silent p.R316R 0.53 TCGA-EE-A3AD-06 1 228529214 228529214 C T OBSCN Missense_Mutation p.S6935L 0.43 probably_damaging(0.998) TCGA-EE-A3AD-06 1 23688771 23688771 C T ZNF436 Silent p.G368G 0.52 TCGA-EE-A3AD-06 1 236923029 236923029 G A ACTN2 Silent p.K769K 0.25 TCGA-EE-A3AD-06 1 245019253 245019253 C T HNRNPU Missense_Mutation p.R707K 0.49 tolerated(1) unknown(0) TCGA-EE-A3AD-06 1 247875758 247875758 C T OR6F1 Silent p.Q100Q 0.32 TCGA-EE-A3AD-06 1 248262935 248262935 C T OR2L13 Silent p.S86S 0.51 TCGA-EE-A3AD-06 1 248308924 248308924 G A OR2M5 Missense_Mutation p.D159N 0.54 tolerated(0.29) benign(0.045) TCGA-EE-A3AD-06 1 248309049 248309049 C T OR2M5 Silent p.F200F 0.44 TCGA-EE-A3AD-06 1 248512210 248512210 C T OR14C36 Missense_Mutation p.T45I 0.49 tolerated(0.45) benign(0.008) TCGA-EE-A3AD-06 1 27700472 27700472 G A FCN3 Silent p.G72G 0.30 TCGA-EE-A3AD-06 1 35915573 35915573 G A KIAA0319L Missense_Mutation p.L750F 0.58 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 1 3755581 3755581 G A CEP104 Missense_Mutation p.R280C 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 1 40150167 40150167 C T HPCAL4 Missense_Mutation p.D37N 0.50 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AD-06 1 44128634 44128634 A G KDM4A Missense_Mutation p.T167A 0.58 tolerated(0.41) possibly_damaging(0.631) TCGA-EE-A3AD-06 1 47284389 47284389 C T CYP4B1 Missense_Mutation p.P481L 0.35 tolerated(0.13) benign(0.014) TCGA-EE-A3AD-06 1 47395818 47395818 G A CYP4A11 Missense_Mutation p.P510L 0.24 deleterious(0.01) benign(0.427) TCGA-EE-A3AD-06 1 52486561 52486561 C T TXNDC12 3'UTR 0.74 TCGA-EE-A3AD-06 1 57372379 57372379 C T C8A Missense_Mutation p.S379F 0.65 tolerated(0.07) benign(0.182) TCGA-EE-A3AD-06 1 57499079 57499079 C T DAB1 Intron 0.30 TCGA-EE-A3AD-06 1 62235086 62235088 AGC - INADL In_Frame_Del p.A173del 0.20 TCGA-EE-A3AD-06 1 74507471 74507471 G A LRRIQ3 Missense_Mutation p.P382S 0.44 tolerated(0.45) benign(0.021) TCGA-EE-A3AD-06 1 75707705 75707705 C T SLC44A5 Silent p.A171A 0.78 TCGA-EE-A3AD-06 1 97700485 97700485 G A DPYD Missense_Mutation p.P789S 0.28 deleterious(0.05) possibly_damaging(0.649) TCGA-EE-A3AD-06 20 10393935 10393935 G A MKKS Silent p.I76I 0.49 TCGA-EE-A3AD-06 20 17339059 17339059 C T PCSK2 Missense_Mutation p.P124S 0.48 deleterious(0.01) possibly_damaging(0.648) TCGA-EE-A3AD-06 20 2413326 2413326 C T TGM6 3'UTR 0.36 TCGA-EE-A3AD-06 20 2444485 2444485 C G SNRPB Missense_Mutation p.A110P 0.39 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AD-06 20 2604977 2604977 C T TMC2 Silent p.F747F 0.54 TCGA-EE-A3AD-06 20 29966176 29966176 C T DEFB118 3'Flank 0.42 TCGA-EE-A3AD-06 20 30436629 30436629 C T FOXS1 5'Flank 0.59 TCGA-EE-A3AD-06 20 30686916 30686916 C T HCK Silent p.T452T 0.46 TCGA-EE-A3AD-06 20 31656669 31656669 C T BPIFB3 Missense_Mutation p.P347S 0.52 deleterious(0) possibly_damaging(0.825) TCGA-EE-A3AD-06 20 33872062 33872062 A G EIF6 Missense_Mutation p.V37A 0.21 tolerated(0.3) benign(0.013) TCGA-EE-A3AD-06 20 34025487 34025487 G A GDF5 Silent p.A74A 0.53 TCGA-EE-A3AD-06 20 36937392 36937392 C T BPI Silent p.G106G 0.49 TCGA-EE-A3AD-06 20 36993260 36993260 C T LBP Missense_Mutation p.P259S 0.48 tolerated(0.18) benign(0.19) TCGA-EE-A3AD-06 20 39992396 39992396 G A EMILIN3 Silent p.H132H 0.39 TCGA-EE-A3AD-06 20 41101054 41101054 C T PTPRT Silent p.Q434Q 0.35 TCGA-EE-A3AD-06 20 44676643 44676643 G A SLC12A5 Missense_Mutation p.G667E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 20 47989650 47989650 G A KCNB1 Missense_Mutation p.S816F 0.34 deleterious_low_confidence(0.04) benign(0.224) TCGA-EE-A3AD-06 20 51871101 51871101 C T TSHZ2 Silent p.Y368Y 0.27 TCGA-EE-A3AD-06 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.46 tolerated(0.4) benign(0) TCGA-EE-A3AD-06 21 10996106 10996106 C T TPTE RNA 0.27 TCGA-EE-A3AD-06 21 30715024 30715024 G A BACH1 Missense_Mutation p.R694Q 0.63 tolerated(0.75) benign(0.001) TCGA-EE-A3AD-06 21 36206830 36206830 G A RUNX1 Silent p.L228L 0.46 TCGA-EE-A3AD-06 21 37602855 37602855 C T DOPEY2 Silent p.I591I 0.48 TCGA-EE-A3AD-06 21 40553707 40553707 T G PSMG1 Missense_Mutation p.N78H 0.43 deleterious(0) probably_damaging(0.923) TCGA-EE-A3AD-06 21 44171281 44171281 C T PDE9A Nonsense_Mutation p.R237* 0.41 TCGA-EE-A3AD-06 21 47864701 47864701 G T PCNT Missense_Mutation p.V3312L 0.18 benign(0.001) TCGA-EE-A3AD-06 22 19898968 19898968 G A TXNRD2 Silent p.I198I 0.45 TCGA-EE-A3AD-06 22 29727460 29727460 G A AP1B1 Silent p.L834L 0.43 TCGA-EE-A3AD-06 22 32756441 32756441 G A RFPL3 Nonsense_Mutation p.W192* 0.35 TCGA-EE-A3AD-06 22 39077956 39077956 C T TOMM22 5'UTR 0.71 TCGA-EE-A3AD-06 22 40761016 40761016 C T ADSL Missense_Mutation p.H442Y 0.19 deleterious(0.01) benign(0.011) TCGA-EE-A3AD-06 22 42128253 42128253 C T MEI1 Silent p.I367I 0.56 TCGA-EE-A3AD-06 22 43972313 43972313 C T EFCAB6 Missense_Mutation p.G1095E 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A3AD-06 22 50546581 50546581 G A MOV10L1 Silent p.K153K 0.40 TCGA-EE-A3AD-06 2 113763661 113763661 C T IL36A Missense_Mutation p.P41S 0.96 tolerated(0.09) possibly_damaging(0.461) TCGA-EE-A3AD-06 2 11802193 11802193 G A NTSR2 Silent p.I266I 0.88 TCGA-EE-A3AD-06 2 12858523 12858523 A T TRIB2 Silent p.I30I 0.85 TCGA-EE-A3AD-06 2 136570041 136570041 C T LCT Silent p.G731G 0.91 TCGA-EE-A3AD-06 2 160672014 160672014 G A LY75-CD302 Missense_Mutation p.S1484F 0.95 deleterious(0.04) probably_damaging(0.983) TCGA-EE-A3AD-06 2 167160613 167160613 C T SCN9A Intron 0.95 TCGA-EE-A3AD-06 2 168106203 168106203 T A XIRP2 Silent p.A2767A 0.88 TCGA-EE-A3AD-06 2 179593492 179593492 G A TTN Silent p.I6387I 0.86 TCGA-EE-A3AD-06 2 18764168 18764168 C T NT5C1B Silent p.V389V 0.82 TCGA-EE-A3AD-06 2 197540896 197540896 T C CCDC150 Silent p.F389F 0.81 TCGA-EE-A3AD-06 2 201464354 201464354 C T AOX1 Silent p.A107A 0.90 TCGA-EE-A3AD-06 2 21260127 21260127 C T APOB Missense_Mutation p.D180N 0.86 possibly_damaging(0.898) TCGA-EE-A3AD-06 2 225638013 225638013 G A DOCK10 Missense_Mutation p.S2022L 0.91 tolerated(0.13) benign(0.023) TCGA-EE-A3AD-06 2 240981475 240981475 G A PRR21 Missense_Mutation p.H309Y 0.71 tolerated_low_confidence(0.6) unknown(0) TCGA-EE-A3AD-06 2 28800973 28800973 G A PLB1 Splice_Site p.X478_splice 0.89 TCGA-EE-A3AD-06 2 54014422 54014422 G A ERLEC1 Silent p.L25L 0.86 TCGA-EE-A3AD-06 2 54014423 54014423 G A ERLEC1 Missense_Mutation p.E26K 0.78 tolerated(0.59) benign(0.036) TCGA-EE-A3AD-06 2 74754444 74754444 C T AUP1 Silent p.G336G 0.10 TCGA-EE-A3AD-06 2 97370339 97370339 G A LMAN2L 3'Flank 0.91 TCGA-EE-A3AD-06 3 101311680 101311680 C T PCNP 3'UTR 0.52 TCGA-EE-A3AD-06 3 102195856 102195856 A C ZPLD1 Missense_Mutation p.D364A 0.51 deleterious(0) benign(0.341) TCGA-EE-A3AD-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A3AD-06 3 10975766 10975766 T A SLC6A11 Missense_Mutation p.Y497N 0.40 deleterious(0.02) possibly_damaging(0.649) TCGA-EE-A3AD-06 3 112648073 112648073 C T CD200R1 Missense_Mutation p.G162R 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 3 122002712 122002712 C T CASR Silent p.F647F 0.51 TCGA-EE-A3AD-06 3 124436155 124436155 G A KALRN Missense_Mutation p.V1083I 0.40 tolerated(0.22) probably_damaging(0.994) TCGA-EE-A3AD-06 3 132419248 132419248 G A NPHP3 Missense_Mutation p.S558F 0.51 deleterious(0.03) benign(0.17) TCGA-EE-A3AD-06 3 133553457 133553457 G A RAB6B Missense_Mutation p.P175L 0.36 deleterious(0.04) benign(0.098) TCGA-EE-A3AD-06 3 13367412 13367412 G A NUP210 Silent p.S1509S 0.42 TCGA-EE-A3AD-06 3 141682663 141682663 G A TFDP2 Missense_Mutation p.S292F 0.44 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AD-06 3 148901328 148901329 AC - CP Frame_Shift_Del p.Y784Sfs*5 0.44 TCGA-EE-A3AD-06 3 151475240 151475240 G A AADACL2 Missense_Mutation p.R355Q 0.42 tolerated(0.33) benign(0.182) TCGA-EE-A3AD-06 3 15292841 15292841 G A CAPN7 3'UTR 0.50 TCGA-EE-A3AD-06 3 164905676 164905676 T A SLITRK3 3'UTR 0.54 TCGA-EE-A3AD-06 3 167240235 167240235 G A WDR49 Missense_Mutation p.P529L 0.26 tolerated(0.2) benign(0.041) TCGA-EE-A3AD-06 3 168810878 168810878 G A MECOM Missense_Mutation p.S888L 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AD-06 3 168833417 168833417 C T MECOM Missense_Mutation p.R625Q 0.46 tolerated(0.14) benign(0.045) TCGA-EE-A3AD-06 3 183898387 183898387 C T AP2M1 Intron 0.46 TCGA-EE-A3AD-06 3 183908988 183908988 A G ABCF3 Missense_Mutation p.H505R 0.51 tolerated(0.25) benign(0) TCGA-EE-A3AD-06 3 192517330 192517330 G A MB21D2 Silent p.V107V 0.31 TCGA-EE-A3AD-06 3 193039583 193039583 G A ATP13A5 Missense_Mutation p.S601F 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 3 193120490 193120490 C T ATP13A4 Missense_Mutation p.G1181E 0.44 tolerated(0.19) benign(0.001) TCGA-EE-A3AD-06 3 194177885 194177885 A T ATP13A3 Silent p.V166V 0.37 TCGA-EE-A3AD-06 3 196674066 196674066 G A PIGZ Missense_Mutation p.L568F 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-EE-A3AD-06 3 38622628 38622628 G A SCN5A Missense_Mutation p.P1008S 0.41 tolerated(0.76) benign(0.001) TCGA-EE-A3AD-06 3 38798606 38798606 G T SCN10A Missense_Mutation p.P332Q 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 3 39135452 39135452 T C WDR48 Silent p.S611S 0.28 TCGA-EE-A3AD-06 3 39374497 39374497 G A CCR8 Silent p.L225L 0.53 TCGA-EE-A3AD-06 3 42956121 42956121 C T ZNF662 Silent p.L212L 0.42 TCGA-EE-A3AD-06 3 44541560 44541560 G A ZNF852 Missense_Mutation p.H237Y 0.32 deleterious(0) probably_damaging(0.931) TCGA-EE-A3AD-06 3 46399426 46399426 C T CCR2 Silent p.I136I 0.40 TCGA-EE-A3AD-06 3 46622733 46622733 A G TDGF1 Missense_Mutation p.Y187C 0.43 deleterious(0) probably_damaging(0.95) TCGA-EE-A3AD-06 3 4715049 4715049 C T ITPR1 Missense_Mutation p.P797S 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AD-06 3 4725105 4725105 G A ITPR1 Missense_Mutation p.G1051D 0.46 tolerated(0.1) probably_damaging(1) TCGA-EE-A3AD-06 3 49688293 49688293 G A BSN Silent p.Q589Q 0.53 TCGA-EE-A3AD-06 3 49692023 49692023 C T BSN Silent p.I1678I 0.51 TCGA-EE-A3AD-06 3 49692024 49692024 C T BSN Missense_Mutation p.L1679F 0.51 unknown(0) TCGA-EE-A3AD-06 3 49737767 49737767 C T RNF123 Silent p.L364L 0.35 TCGA-EE-A3AD-06 3 50414964 50414964 C T CACNA2D2 Silent p.L520L 0.28 TCGA-EE-A3AD-06 3 52028085 52028085 G A RPL29 Silent p.L54L 0.53 TCGA-EE-A3AD-06 3 52028086 52028086 G A RPL29 Silent p.G53G 0.53 TCGA-EE-A3AD-06 3 5229591 5229591 A C AC026202.1 Missense_Mutation p.V131G 0.45 unknown(0) TCGA-EE-A3AD-06 3 58641329 58641329 C T FAM3D Splice_Site 0.45 TCGA-EE-A3AD-06 3 67053665 67053665 C T KBTBD8 Nonsense_Mutation p.R92* 0.50 TCGA-EE-A3AD-06 3 77684063 77684063 C T ROBO2 Missense_Mutation p.P1284L 0.37 deleterious(0.02) possibly_damaging(0.713) TCGA-EE-A3AD-06 3 98518125 98518125 T C DCBLD2 3'UTR 0.31 TCGA-EE-A3AD-06 4 109773436 109773436 C T COL25A1 Missense_Mutation p.G449S 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 4 110788925 110788925 G A LRIT3 Missense_Mutation p.G240R 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AD-06 4 110864560 110864560 C T EGF Missense_Mutation p.P160S 0.27 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A3AD-06 4 111397748 111397748 C T ENPEP Silent p.L60L 0.42 TCGA-EE-A3AD-06 4 114161656 114161656 T C ANK2 Silent p.L237L 0.24 TCGA-EE-A3AD-06 4 123270442 123270442 C T KIAA1109 Silent p.T4470T 0.37 TCGA-EE-A3AD-06 4 124323802 124323802 C T SPRY1 3'UTR 0.41 TCGA-EE-A3AD-06 4 126411080 126411080 C T FAT4 Missense_Mutation p.S4368F 0.56 benign(0.17) TCGA-EE-A3AD-06 4 126412767 126412767 G A FAT4 Nonsense_Mutation p.W4930* 0.56 TCGA-EE-A3AD-06 4 129127653 129127653 C T LARP1B Nonsense_Mutation p.Q794* 0.29 TCGA-EE-A3AD-06 4 157771497 157771497 G A PDGFC Missense_Mutation p.P64S 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 4 160271420 160271420 C T RAPGEF2 Missense_Mutation p.P1121S 0.63 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AD-06 4 162680614 162680614 C T FSTL5 Missense_Mutation p.D226N 0.28 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AD-06 4 166263024 166263024 C T MSMO1 Nonsense_Mutation p.R270* 0.65 TCGA-EE-A3AD-06 4 169201585 169201585 A G DDX60 Silent p.L627L 0.65 TCGA-EE-A3AD-06 4 170618536 170618536 C T CLCN3 Missense_Mutation p.A405V 0.32 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AD-06 4 170618537 170618537 C T CLCN3 Silent p.A405A 0.32 TCGA-EE-A3AD-06 4 1730378 1730378 C T TACC3 Missense_Mutation p.P417S 0.57 deleterious(0.05) benign(0.321) TCGA-EE-A3AD-06 4 17606287 17606287 C T LAP3 Silent p.F419F 0.46 TCGA-EE-A3AD-06 4 177605038 177605038 C T VEGFC 3'UTR 0.31 TCGA-EE-A3AD-06 4 183594347 183594347 A G TENM3 Missense_Mutation p.K434R 0.37 tolerated(1) benign(0.292) TCGA-EE-A3AD-06 4 185616448 185616448 C T CENPU Silent p.Q417Q 0.61 TCGA-EE-A3AD-06 4 187004117 187004117 C T TLR3 Missense_Mutation p.A426V 0.61 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3AD-06 4 2272549 2272549 G A ZFYVE28 Missense_Mutation p.P856L 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 4 38799846 38799846 G A TLR1 Missense_Mutation p.H203Y 0.38 tolerated(1) possibly_damaging(0.616) TCGA-EE-A3AD-06 4 47939314 47939314 C T CNGA1 Missense_Mutation p.M468I 0.47 tolerated(0.14) possibly_damaging(0.66) TCGA-EE-A3AD-06 4 501335 501335 G A PIGG Missense_Mutation p.E238K 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 4 52894173 52894173 G A SGCB Silent p.T238T 0.53 TCGA-EE-A3AD-06 4 53773709 53773709 G A SCFD2 Missense_Mutation p.P586L 0.45 deleterious(0) possibly_damaging(0.899) TCGA-EE-A3AD-06 4 57182676 57182676 C T KIAA1211 Missense_Mutation p.P1003L 0.79 tolerated(0.34) possibly_damaging(0.859) TCGA-EE-A3AD-06 4 57871556 57871556 C T POLR2B Missense_Mutation p.P349S 0.31 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AD-06 4 69095137 69095137 A - TMPRSS11B Frame_Shift_Del p.Y262Ifs*35 0.17 TCGA-EE-A3AD-06 4 69512983 69512983 G A UGT2B15 Nonsense_Mutation p.R478* 0.62 TCGA-EE-A3AD-06 4 70512731 70512731 C T UGT2A1 Missense_Mutation p.R211K 0.65 tolerated(1) benign(0.177) TCGA-EE-A3AD-06 4 74361037 74361037 G A AFM Missense_Mutation p.R360K 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 4 79236762 79236762 T G FRAS1 Missense_Mutation p.C565G 0.13 probably_damaging(0.999) TCGA-EE-A3AD-06 5 1032326 1032326 G A NKD2 Silent p.Q67Q 0.27 TCGA-EE-A3AD-06 5 118450179 118450179 C T DMXL1 Silent p.S169S 0.54 TCGA-EE-A3AD-06 5 118450180 118450180 C T DMXL1 Nonsense_Mutation p.Q170* 0.54 TCGA-EE-A3AD-06 5 13692061 13692061 C T DNAH5 3'UTR 0.18 TCGA-EE-A3AD-06 5 13721244 13721244 G A DNAH5 Silent p.L4048L 0.19 TCGA-EE-A3AD-06 5 138287560 138287560 G A SIL1 Nonsense_Mutation p.Q261* 0.71 TCGA-EE-A3AD-06 5 13919390 13919390 C T DNAH5 Nonsense_Mutation p.W290* 0.76 TCGA-EE-A3AD-06 5 140431406 140431406 C T PCDHB1 Silent p.F117F 0.35 TCGA-EE-A3AD-06 5 140563414 140563414 G A PCDHB16 Missense_Mutation p.G427E 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AD-06 5 140573992 140573992 G A PCDHB10 Missense_Mutation p.E623K 0.45 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A3AD-06 5 145393487 145393487 C T SH3RF2 Missense_Mutation p.L308F 0.68 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A3AD-06 5 149624735 149624735 C T CAMK2A Missense_Mutation p.D325N 0.68 tolerated_low_confidence(0.1) possibly_damaging(0.783) TCGA-EE-A3AD-06 5 150282706 150282706 G A ZNF300 Silent p.S20S 0.14 TCGA-EE-A3AD-06 5 151234673 151234673 C T GLRA1 Missense_Mutation p.G209R 0.77 deleterious(0.02) possibly_damaging(0.831) TCGA-EE-A3AD-06 5 158524054 158524054 G A EBF1 Silent p.A73A 0.79 TCGA-EE-A3AD-06 5 176914999 176914999 G A PDLIM7 Intron 0.75 TCGA-EE-A3AD-06 5 178507117 178507117 C T ZNF354C 3'UTR 0.75 TCGA-EE-A3AD-06 5 179228606 179228606 G A MGAT4B Silent p.A139A 0.74 TCGA-EE-A3AD-06 5 24593451 24593451 T C CDH10 Missense_Mutation p.H50R 0.35 tolerated(0.49) benign(0.001) TCGA-EE-A3AD-06 5 31538428 31538428 G A C5orf22 Missense_Mutation p.E147K 0.97 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AD-06 5 34937619 34937619 C T DNAJC21 Silent p.F209F 0.90 TCGA-EE-A3AD-06 5 55250752 55250752 G A IL6ST Missense_Mutation p.P446S 0.33 deleterious(0.02) benign(0.163) TCGA-EE-A3AD-06 5 64625228 64625228 G A ADAMTS6 Silent p.T400T 0.63 TCGA-EE-A3AD-06 5 6632738 6632738 G A NSUN2 Silent p.A76A 0.59 TCGA-EE-A3AD-06 5 6739885 6739885 C T PAPD7 Missense_Mutation p.P60S 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 5 87502314 87502314 A G TMEM161B Missense_Mutation p.F201L 0.54 tolerated(1) benign(0.239) TCGA-EE-A3AD-06 5 89953898 89953898 G A GPR98 Missense_Mutation p.G1519R 0.67 probably_damaging(0.996) TCGA-EE-A3AD-06 5 89992813 89992813 G A GPR98 Missense_Mutation p.E2669K 0.14 probably_damaging(0.953) TCGA-EE-A3AD-06 5 96358022 96358022 C T LNPEP Missense_Mutation p.L799F 0.50 tolerated(1) possibly_damaging(0.593) TCGA-EE-A3AD-06 6 101090551 101090551 G A ASCC3 Silent p.I1269I 0.94 TCGA-EE-A3AD-06 6 117710787 117710787 G A ROS1 Silent p.P495P 0.92 TCGA-EE-A3AD-06 6 136693711 136693711 C T MAP7 Silent p.S290S 0.96 TCGA-EE-A3AD-06 6 27925100 27925100 C T OR2B6 Missense_Mutation p.L28F 0.48 tolerated(1) benign(0) TCGA-EE-A3AD-06 6 28543645 28543645 G A SCAND3 Silent p.I279I 0.39 TCGA-EE-A3AD-06 6 29342555 29342555 C T OR12D3 Silent p.Q170Q 0.56 TCGA-EE-A3AD-06 6 29408418 29408418 C T OR10C1 Missense_Mutation p.P209L 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AD-06 6 29943083 29943083 G C HCG9 RNA 0.38 TCGA-EE-A3AD-06 6 31847837 31847837 G A EHMT2 3'UTR 0.42 TCGA-EE-A3AD-06 6 33148473 33148473 G A COL11A2 Missense_Mutation p.P333L 0.43 possibly_damaging(0.851) TCGA-EE-A3AD-06 6 43109726 43109726 C T PTK7 Missense_Mutation p.A617V 0.62 tolerated(0.31) probably_damaging(1) TCGA-EE-A3AD-06 6 43153716 43153716 C T CUL9 Silent p.S258S 0.55 TCGA-EE-A3AD-06 6 47686167 47686167 C T GPR115 Missense_Mutation p.R693C 0.66 deleterious_low_confidence(0.04) possibly_damaging(0.802) TCGA-EE-A3AD-06 6 53371823 53371823 C T GCLC Missense_Mutation p.G362D 0.45 tolerated(0.06) benign(0.319) TCGA-EE-A3AD-06 6 54095550 54095550 T A MLIP Silent p.P384P 0.40 TCGA-EE-A3AD-06 6 54805927 54805927 G A FAM83B Missense_Mutation p.D720N 0.55 deleterious(0.03) benign(0.047) TCGA-EE-A3AD-06 6 71571422 71571422 C T B3GAT2 Missense_Mutation p.V306I 0.89 tolerated(0.06) benign(0.042) TCGA-EE-A3AD-06 6 76022447 76022447 C A FILIP1 Missense_Mutation p.R1034L 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-EE-A3AD-06 6 78172887 78172887 C T HTR1B Silent p.R78R 0.95 TCGA-EE-A3AD-06 6 87965184 87965184 C T ZNF292 Missense_Mutation p.P613S 1.00 tolerated(0.09) probably_damaging(0.987) TCGA-EE-A3AD-06 6 87965185 87965185 C T ZNF292 Missense_Mutation p.P613L 1.00 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AD-06 7 100692154 100692154 G A MUC17 Missense_Mutation p.M4188I 0.89 unknown(0) TCGA-EE-A3AD-06 7 116165086 116165086 C T CAV1 5'UTR 0.95 TCGA-EE-A3AD-06 7 126173704 126173704 C T GRM8 Missense_Mutation p.E578K 0.95 tolerated(0.15) probably_damaging(0.993) TCGA-EE-A3AD-06 7 126173839 126173839 G A GRM8 Missense_Mutation p.P533S 0.95 tolerated(0.22) probably_damaging(1) TCGA-EE-A3AD-06 7 137773395 137773395 G A AKR1D1 Missense_Mutation p.G48R 0.97 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AD-06 7 140453135 140453135 C T BRAF Silent p.V600V 0.97 TCGA-EE-A3AD-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.97 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AD-06 7 141635733 141635733 C T CLEC5A Missense_Mutation p.E76K 0.94 tolerated(0.36) benign(0.003) TCGA-EE-A3AD-06 7 142499823 142499823 C T TRBC2 Silent p.I147I 0.91 TCGA-EE-A3AD-06 7 150648102 150648102 G A KCNH2 Silent p.I684I 0.98 TCGA-EE-A3AD-06 7 150695478 150695478 G A NOS3 Missense_Mutation p.E206K 1.00 tolerated(0.14) probably_damaging(0.984) TCGA-EE-A3AD-06 7 150934799 150934799 G A CHPF2 Missense_Mutation p.E451K 0.96 tolerated(0.09) benign(0.262) TCGA-EE-A3AD-06 7 1586603 1586603 G A TMEM184A Silent p.P409P 0.29 TCGA-EE-A3AD-06 7 22196451 22196451 C T RAPGEF5 Missense_Mutation p.G385E 0.15 tolerated(0.34) benign(0.355) TCGA-EE-A3AD-06 7 25175609 25175609 G A C7orf31 Silent p.S585S 0.31 TCGA-EE-A3AD-06 7 31146121 31146121 G A ADCYAP1R1 Silent p.E438E 0.51 TCGA-EE-A3AD-06 7 36917633 36917633 C T ELMO1 Missense_Mutation p.D602N 0.57 deleterious(0) benign(0.006) TCGA-EE-A3AD-06 7 48391836 48391836 G T ABCA13 Silent p.L3480L 0.64 TCGA-EE-A3AD-06 7 55231516 55231516 G A EGFR Silent p.R574R 0.34 TCGA-EE-A3AD-06 7 63982563 63982563 G A ZNF680 Missense_Mutation p.S190L 0.97 tolerated(0.07) benign(0.037) TCGA-EE-A3AD-06 7 82580360 82580360 G A PCLO Missense_Mutation p.P3182S 1.00 unknown(0) TCGA-EE-A3AD-06 7 87323230 87323230 C T RUNDC3B Missense_Mutation p.S82F 0.96 tolerated_low_confidence(0.14) benign(0.013) TCGA-EE-A3AD-06 7 94049546 94049546 G A COL1A2 Missense_Mutation p.G694D 0.89 unknown(0) TCGA-EE-A3AD-06 8 100168820 100168820 G A VPS13B Missense_Mutation p.R686Q 0.25 tolerated(0.16) possibly_damaging(0.885) TCGA-EE-A3AD-06 8 100168821 100168821 G A VPS13B Silent p.R686R 0.25 TCGA-EE-A3AD-06 8 118552234 118552234 C T MED30 3'UTR 0.21 TCGA-EE-A3AD-06 8 121326192 121326192 G A COL14A1 Missense_Mutation p.E1493K 0.26 deleterious(0.02) benign(0.16) TCGA-EE-A3AD-06 8 124989728 124989728 C T FER1L6 Silent p.F314F 0.62 TCGA-EE-A3AD-06 8 124989729 124989729 C T FER1L6 Missense_Mutation p.P315S 0.63 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 8 125597365 125597365 G T MTSS1 Silent p.S141S 0.15 TCGA-EE-A3AD-06 8 132051705 132051705 G A ADCY8 Missense_Mutation p.A292V 0.78 deleterious(0.01) possibly_damaging(0.824) TCGA-EE-A3AD-06 8 139155319 139155319 C T FAM135B Missense_Mutation p.D1192N 0.72 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AD-06 8 144945045 144945045 G A EPPK1 Silent p.L793L 0.78 TCGA-EE-A3AD-06 8 17401205 17401205 C T SLC7A2 Silent p.L159L 0.53 TCGA-EE-A3AD-06 8 23702457 23702457 C T STC1 Missense_Mutation p.M190I 0.46 tolerated(0.23) benign(0.388) TCGA-EE-A3AD-06 8 26441409 26441409 C T DPYSL2 Missense_Mutation p.R75C 0.40 tolerated(0.1) benign(0.143) TCGA-EE-A3AD-06 8 2813184 2813184 G A CSMD1 Silent p.F3307F 0.50 TCGA-EE-A3AD-06 8 32617893 32617893 G A NRG1 Missense_Mutation p.D418N 0.51 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A3AD-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.42 TCGA-EE-A3AD-06 8 41548013 41548013 G A ANK1 Silent p.N1362N 0.41 TCGA-EE-A3AD-06 8 42147757 42147757 C T IKBKB Missense_Mutation p.A95V 0.50 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AD-06 8 52384816 52384816 C T PXDNL Missense_Mutation p.G248E 0.27 deleterious(0.03) probably_damaging(0.967) TCGA-EE-A3AD-06 8 59515881 59515881 G A NSMAF Silent p.S342S 0.26 TCGA-EE-A3AD-06 8 59515917 59515917 C T NSMAF Silent p.E330E 0.57 TCGA-EE-A3AD-06 8 6793374 6793374 G A DEFA4 3'UTR 0.55 TCGA-EE-A3AD-06 8 69000017 69000017 C T PREX2 Missense_Mutation p.P696S 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 8 69028124 69028124 G A PREX2 Missense_Mutation p.E1095K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EE-A3AD-06 8 73849483 73849483 G A KCNB2 Missense_Mutation p.M631I 0.25 tolerated_low_confidence(0.59) benign(0.003) TCGA-EE-A3AD-06 8 73849485 73849485 A T KCNB2 Missense_Mutation p.K632M 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.855) TCGA-EE-A3AD-06 8 87162442 87162442 C T ATP6V0D2 Silent p.L247L 0.72 TCGA-EE-A3AD-06 8 90937444 90937444 A G OSGIN2 Missense_Mutation p.K445R 0.66 tolerated(0.37) benign(0.021) TCGA-EE-A3AD-06 9 105767487 105767487 G C CYLC2 Missense_Mutation p.D192H 0.30 deleterious(0.02) unknown(0) TCGA-EE-A3AD-06 9 115422340 115422340 C T KIAA1958 Silent p.C714C 0.68 TCGA-EE-A3AD-06 9 116956705 116956705 C T COL27A1 Missense_Mutation p.L680F 0.21 unknown(0) TCGA-EE-A3AD-06 9 119187972 119187972 T G ASTN2 3'UTR 0.50 TCGA-EE-A3AD-06 9 125621031 125621031 C T RC3H2 Missense_Mutation p.E734K 0.54 deleterious(0) probably_damaging(0.952) TCGA-EE-A3AD-06 9 126164068 126164068 C T DENND1A Intron 0.37 TCGA-EE-A3AD-06 9 134390882 134390882 C T POMT1 Silent p.S437S 0.58 TCGA-EE-A3AD-06 9 135513657 135513657 T C DDX31 Intron 0.24 TCGA-EE-A3AD-06 9 136501648 136501648 C T DBH Missense_Mutation p.P52L 0.60 tolerated(0.08) benign(0.018) TCGA-EE-A3AD-06 9 20948880 20948880 C A FOCAD Missense_Mutation p.L1277I 0.15 tolerated(0.36) benign(0.057) TCGA-EE-A3AD-06 9 35674098 35674098 C T CA9 Missense_Mutation p.P48S 0.50 tolerated_low_confidence(1) unknown(0) TCGA-EE-A3AD-06 9 36882068 36882068 G A PAX5 Silent p.Y315Y 0.26 TCGA-EE-A3AD-06 9 37512458 37512458 G A FBXO10 3'UTR 0.38 TCGA-EE-A3AD-06 9 3937183 3937183 C T GLIS3 Missense_Mutation p.G573S 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 9 4662890 4662890 C T PPAPDC2 Missense_Mutation p.A172V 0.50 deleterious(0) possibly_damaging(0.513) TCGA-EE-A3AD-06 9 74481741 74481741 A G ABHD17B Silent p.L277L 0.46 TCGA-EE-A3AD-06 9 78968949 78968949 G A PCSK5 Missense_Mutation p.G1663R 0.50 tolerated(0.09) benign(0.319) TCGA-EE-A3AD-06 9 82242321 82242321 G A TLE4 Silent p.R116R 0.33 TCGA-EE-A3AD-06 9 85619421 85619421 G A RASEF Silent p.G398G 0.42 TCGA-EE-A3AD-06 9 90501390 90501390 G A SPATA31E1 Missense_Mutation p.R663K 0.27 tolerated(0.22) benign(0.009) TCGA-EE-A3AD-06 9 95599991 95599991 G A ANKRD19P RNA 0.62 TCGA-EE-A3AD-06 9 97356017 97356017 G A FBP2 5'UTR 0.68 TCGA-EE-A3AD-06 X 10182112 10182112 C T CLCN4 Silent p.L656L 1.00 TCGA-EE-A3AD-06 X 102334770 102334770 G A NXF3 Nonsense_Mutation p.R361* 1.00 TCGA-EE-A3AD-06 X 104464352 104464352 C T TEX13A Missense_Mutation p.E176K 0.92 tolerated(0.71) possibly_damaging(0.636) TCGA-EE-A3AD-06 X 105011105 105011105 G A IL1RAPL2 Silent p.V504V 0.96 TCGA-EE-A3AD-06 X 109964648 109964648 G A CHRDL1 Missense_Mutation p.R138W 0.97 deleterious(0) probably_damaging(1) TCGA-EE-A3AD-06 X 138630641 138630641 G A F9 Missense_Mutation p.E171K 0.94 tolerated(0.09) benign(0.059) TCGA-EE-A3AD-06 X 140984544 140984544 G A MAGEC3 Intron 0.96 TCGA-EE-A3AD-06 X 140985120 140985120 G A MAGEC3 Missense_Mutation p.E526K 0.96 tolerated(0.05) possibly_damaging(0.781) TCGA-EE-A3AD-06 X 146312323 146312323 G A MIR506 RNA 0.92 TCGA-EE-A3AD-06 X 151900044 151900044 C T MAGEA12 Missense_Mutation p.E253K 0.96 deleterious(0.04) possibly_damaging(0.656) TCGA-EE-A3AD-06 X 154227796 154227796 C T F8 Missense_Mutation p.D75N 1.00 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A3AD-06 X 154227797 154227797 C T F8 Silent p.T74T 1.00 TCGA-EE-A3AD-06 X 1546780 1546780 G A ASMTL Silent p.P248P 0.50 TCGA-EE-A3AD-06 X 155004021 155004021 C T SPRY3 Missense_Mutation p.P163L 0.90 deleterious(0.03) benign(0.216) TCGA-EE-A3AD-06 X 27766554 27766554 T C DCAF8L2 Silent p.G514G 1.00 TCGA-EE-A3AD-06 X 27766574 27766574 C T DCAF8L2 Missense_Mutation p.P521L 1.00 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3AD-06 X 3229292 3229292 C T MXRA5 Missense_Mutation p.E2318K 0.99 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AD-06 X 50378446 50378446 C T SHROOM4 Silent p.E209E 0.94 TCGA-EE-A3AD-06 X 54162931 54162931 G A FAM120C Silent p.S417S 1.00 TCGA-EE-A3AD-06 X 77913451 77913451 G A ZCCHC5 Missense_Mutation p.S156L 0.94 tolerated(0.29) benign(0.003) TCGA-EE-A3AE-06 10 101611366 101611366 A T ABCC2 Missense_Mutation p.N1539I 0.60 deleterious_low_confidence(0.03) benign(0.169) TCGA-EE-A3AE-06 10 102753064 102753064 C T C10orf2 Missense_Mutation p.P618S 0.42 tolerated(0.07) benign(0.271) TCGA-EE-A3AE-06 10 103340064 103340064 G A POLL Missense_Mutation p.P435L 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 10 104416142 104416142 G A TRIM8 Missense_Mutation p.G350S 0.15 tolerated_low_confidence(0.21) benign(0.227) TCGA-EE-A3AE-06 10 105727584 105727584 C G SLK Missense_Mutation p.D27E 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-EE-A3AE-06 10 106074922 106074922 G A ITPRIP Silent p.D296D 0.54 TCGA-EE-A3AE-06 10 106918722 106918722 G A SORCS3 Missense_Mutation p.E568K 0.35 tolerated(0.11) benign(0.002) TCGA-EE-A3AE-06 10 115534631 115534631 G A PLEKHS1 Missense_Mutation p.E270K 0.11 tolerated(0.3) benign(0.397) TCGA-EE-A3AE-06 10 115804334 115804334 C T ADRB1 Missense_Mutation p.T148I 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 116605952 116605952 C T FAM160B1 Silent p.L408L 0.54 TCGA-EE-A3AE-06 10 121541275 121541275 G A INPP5F Missense_Mutation p.E103K 0.55 tolerated(0.07) possibly_damaging(0.639) TCGA-EE-A3AE-06 10 1230823 1230823 C T ADARB2 Missense_Mutation p.R674Q 0.25 deleterious(0.01) benign(0.049) TCGA-EE-A3AE-06 10 123245036 123245036 C T FGFR2 Missense_Mutation p.G691R 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 123970633 123970633 G A TACC2 Silent p.R2231R 0.59 TCGA-EE-A3AE-06 10 124249007 124249007 G A HTRA1 Silent p.L214L 0.30 TCGA-EE-A3AE-06 10 124351818 124351818 T G DMBT1 Missense_Mutation p.V736G 0.23 deleterious(0) unknown(0) TCGA-EE-A3AE-06 10 124390770 124390770 C T DMBT1 Missense_Mutation p.R1978C 0.21 tolerated(0.07) probably_damaging(0.959) TCGA-EE-A3AE-06 10 124459188 124459188 A C C10orf120 Missense_Mutation p.F40C 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A3AE-06 10 124593308 124593308 G A CUZD1 Missense_Mutation p.R511C 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 124671180 124671180 G A FAM24A Silent p.K10K 0.24 TCGA-EE-A3AE-06 10 128147617 128147617 G A C10orf90 Missense_Mutation p.P630L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 134175022 134175022 C T LRRC27 Missense_Mutation p.P411L 0.55 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A3AE-06 10 135015303 135015303 C T KNDC1 Silent p.A1096A 0.50 TCGA-EE-A3AE-06 10 135101771 135101771 G A TUBGCP2 Silent p.F556F 0.70 TCGA-EE-A3AE-06 10 135438890 135438890 C T FRG2B Missense_Mutation p.E184K 0.12 tolerated(0.07) benign(0.019) TCGA-EE-A3AE-06 10 15614275 15614275 G A ITGA8 Missense_Mutation p.H858Y 0.19 tolerated(0.06) possibly_damaging(0.85) TCGA-EE-A3AE-06 10 18242443 18242443 G A SLC39A12 Missense_Mutation p.G80R 0.45 tolerated(0.2) benign(0.005) TCGA-EE-A3AE-06 10 18280227 18280227 G A SLC39A12 Missense_Mutation p.D473N 0.29 tolerated(0.51) benign(0.026) TCGA-EE-A3AE-06 10 18840768 18840768 C T NSUN6 Missense_Mutation p.R352Q 0.17 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AE-06 10 21112212 21112212 C T NEBL Silent p.E629E 0.56 TCGA-EE-A3AE-06 10 21250667 21250667 G A NEBL Silent p.G63G 0.33 TCGA-EE-A3AE-06 10 24834922 24834922 C T KIAA1217 Missense_Mutation p.S1834L 0.54 tolerated(0.21) benign(0.008) TCGA-EE-A3AE-06 10 25197488 25197488 C T PRTFDC1 Intron 0.60 TCGA-EE-A3AE-06 10 26459367 26459367 G A MYO3A Silent p.R1099R 0.29 TCGA-EE-A3AE-06 10 27687779 27687779 G A PTCHD3 Missense_Mutation p.P583L 0.52 deleterious(0.03) benign(0.091) TCGA-EE-A3AE-06 10 27702954 27702954 G A PTCHD3 Missense_Mutation p.P76S 0.25 tolerated(0.62) benign(0.032) TCGA-EE-A3AE-06 10 27702966 27702966 C T PTCHD3 Missense_Mutation p.D72N 0.65 tolerated_low_confidence(0.49) benign(0.024) TCGA-EE-A3AE-06 10 27703196 27703196 G A PTCHD3 5'UTR 0.18 TCGA-EE-A3AE-06 10 28151542 28151542 C T ARMC4 Missense_Mutation p.E874K 0.50 deleterious(0) possibly_damaging(0.782) TCGA-EE-A3AE-06 10 29773716 29773716 C T SVIL Silent p.G1608G 0.47 TCGA-EE-A3AE-06 10 29813478 29813478 T A SVIL Missense_Mutation p.N837Y 0.17 deleterious(0) possibly_damaging(0.707) TCGA-EE-A3AE-06 10 29813480 29813480 C T SVIL Missense_Mutation p.R836Q 0.19 deleterious(0.03) benign(0.094) TCGA-EE-A3AE-06 10 30316031 30316031 C T KIAA1462 Missense_Mutation p.E1016K 0.56 tolerated(1) benign(0.004) TCGA-EE-A3AE-06 10 30317681 30317681 C T KIAA1462 Missense_Mutation p.G466R 0.26 tolerated(0.33) benign(0.397) TCGA-EE-A3AE-06 10 31784752 31784752 G A ZEB1 Missense_Mutation p.E103K 0.51 tolerated(0.42) benign(0.08) TCGA-EE-A3AE-06 10 31810494 31810494 G A ZEB1 Missense_Mutation p.G745E 0.53 tolerated(0.45) possibly_damaging(0.839) TCGA-EE-A3AE-06 10 32132466 32132466 G A ARHGAP12 Silent p.L407L 0.65 TCGA-EE-A3AE-06 10 32576187 32576187 G A EPC1 Missense_Mutation p.L331F 0.41 tolerated(0.52) benign(0.059) TCGA-EE-A3AE-06 10 33190517 33190517 G A ITGB1 Missense_Mutation p.P793L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 43596017 43596017 G A RET Missense_Mutation p.E62K 0.45 deleterious_low_confidence(0) benign(0.009) TCGA-EE-A3AE-06 10 43610163 43610163 C T RET Silent p.S705S 0.55 TCGA-EE-A3AE-06 10 45473430 45473430 C T C10orf10 Missense_Mutation p.E17K 0.24 deleterious(0) possibly_damaging(0.801) TCGA-EE-A3AE-06 10 45798888 45798888 T A OR13A1 Missense_Mutation p.N328I 0.68 deleterious(0.02) benign(0.342) TCGA-EE-A3AE-06 10 45799154 45799154 G A OR13A1 Silent p.I239I 0.13 TCGA-EE-A3AE-06 10 46969278 46969278 G A SYT15 Silent p.C61C 0.26 TCGA-EE-A3AE-06 10 47087776 47087776 G A NPY4R Silent p.K331K 0.14 TCGA-EE-A3AE-06 10 48413755 48413755 C T GDF2 Silent p.T371T 0.50 TCGA-EE-A3AE-06 10 49371450 49371450 C T FRMPD2 Missense_Mutation p.E1268K 0.57 tolerated(0.09) benign(0.004) TCGA-EE-A3AE-06 10 50121405 50121405 C T LRRC18 Intron 0.46 TCGA-EE-A3AE-06 10 50227549 50227549 C T VSTM4 3'UTR 0.40 TCGA-EE-A3AE-06 10 50531812 50531812 G A C10orf71 Missense_Mutation p.G408S 0.56 tolerated(0.2) benign(0.297) TCGA-EE-A3AE-06 10 50532442 50532442 G A C10orf71 Missense_Mutation p.E618K 0.60 deleterious(0.05) benign(0.112) TCGA-EE-A3AE-06 10 50954808 50954808 G A OGDHL Silent p.V428V 0.16 TCGA-EE-A3AE-06 10 51768923 51768923 C T AGAP6 Silent p.S346S 0.21 TCGA-EE-A3AE-06 10 6066267 6066267 C T IL2RA Missense_Mutation p.E103K 0.50 tolerated(0.18) benign(0.051) TCGA-EE-A3AE-06 10 61029683 61029683 G A FAM13C Missense_Mutation p.P260L 0.50 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 10 61829982 61829982 C T ANK3 Missense_Mutation p.E3553K 0.62 benign(0.014) TCGA-EE-A3AE-06 10 61835462 61835462 G A ANK3 Missense_Mutation p.P1726L 0.44 probably_damaging(0.994) TCGA-EE-A3AE-06 10 61847919 61847919 G A ANK3 Nonsense_Mutation p.R1176* 0.47 TCGA-EE-A3AE-06 10 67829185 67829185 G A CTNNA3 Silent p.F680F 0.37 TCGA-EE-A3AE-06 10 67862927 67862927 C T CTNNA3 Silent p.G655G 0.26 TCGA-EE-A3AE-06 10 70182600 70182600 G A DNA2 Silent p.S838S 0.36 TCGA-EE-A3AE-06 10 70775725 70775725 C T KIAA1279 Silent p.I473I 0.40 TCGA-EE-A3AE-06 10 70931076 70931089 TTAAGTTCAGCAGG - VPS26A 3'UTR 0.48 TCGA-EE-A3AE-06 10 71021021 71021021 C T HKDC1 Silent p.F781F 0.46 TCGA-EE-A3AE-06 10 71657230 71657230 G A COL13A1 Splice_Site p.X220_splice 0.62 TCGA-EE-A3AE-06 10 73121975 73121975 C T SLC29A3 Silent p.F346F 0.17 TCGA-EE-A3AE-06 10 73956619 73956619 G A ASCC1 Nonsense_Mutation p.Q175* 0.27 TCGA-EE-A3AE-06 10 74096350 74096350 A T DNAJB12 Missense_Mutation p.V347D 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AE-06 10 75053206 75053206 C T TTC18 Intron 0.55 TCGA-EE-A3AE-06 10 75530912 75530912 C T SEC24C 3'UTR 0.51 TCGA-EE-A3AE-06 10 75854195 75854195 C T VCL Missense_Mutation p.P507S 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 10 7762927 7762927 G A ITIH2 Splice_Site p.X246_splice 0.21 TCGA-EE-A3AE-06 10 79566529 79566529 G A DLG5 Missense_Mutation p.P1652S 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 10 79570914 79570914 G A DLG5 Silent p.I1467I 0.55 TCGA-EE-A3AE-06 10 81917756 81917756 G A ANXA11 Silent p.A434A 0.26 TCGA-EE-A3AE-06 10 87373164 87373164 C T GRID1 Silent p.E867E 0.25 TCGA-EE-A3AE-06 10 88703170 88703170 C T MMRN2 Missense_Mutation p.M457I 0.33 tolerated(0.23) benign(0.064) TCGA-EE-A3AE-06 10 92502257 92502257 C T HTR7 Silent p.K474K 0.67 TCGA-EE-A3AE-06 10 95353766 95353766 C T RBP4 Missense_Mutation p.D128N 0.51 deleterious(0) probably_damaging(0.947) TCGA-EE-A3AE-06 10 96448009 96448009 G A CYP2C18 Silent p.V153V 0.55 TCGA-EE-A3AE-06 10 98205876 98205876 C T TLL2 Missense_Mutation p.M112I 0.16 tolerated(0.19) benign(0) TCGA-EE-A3AE-06 11 100211289 100211289 G A CNTN5 Missense_Mutation p.G942E 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-EE-A3AE-06 11 101765618 101765618 C T ANGPTL5 Missense_Mutation p.G280E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 101834363 101834363 C T KIAA1377 Missense_Mutation p.S866F 0.30 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AE-06 11 103026062 103026062 C T DYNC2H1 Silent p.I1192I 0.25 TCGA-EE-A3AE-06 11 105923920 105923920 G T KBTBD3 Missense_Mutation p.A499E 0.56 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AE-06 11 108389067 108389067 G A EXPH5 Missense_Mutation p.H176Y 0.19 deleterious(0) benign(0.06) TCGA-EE-A3AE-06 11 1086451 1086451 C T MUC2 Missense_Mutation p.L1054F 0.50 probably_damaging(0.94) TCGA-EE-A3AE-06 11 1093547 1093547 C A MUC2 Missense_Mutation p.T1789N 0.73 unknown(0) TCGA-EE-A3AE-06 11 1093548 1093548 C T MUC2 Silent p.T1789T 0.79 TCGA-EE-A3AE-06 11 112014327 112014327 C T IL18 Missense_Mutation p.E192K 0.29 tolerated_low_confidence(1) benign(0) TCGA-EE-A3AE-06 11 113268025 113268025 G A ANKK1 Silent p.R306R 0.35 TCGA-EE-A3AE-06 11 113281467 113281467 C T DRD2 Silent p.L438L 0.38 TCGA-EE-A3AE-06 11 113815350 113815350 C T HTR3B Silent p.I321I 0.27 TCGA-EE-A3AE-06 11 114393615 114393615 G A NXPE1 Missense_Mutation p.P223L 0.24 tolerated(0.06) benign(0.139) TCGA-EE-A3AE-06 11 116691654 116691654 C T APOA4 Missense_Mutation p.E374K 0.32 deleterious_low_confidence(0.05) benign(0.001) TCGA-EE-A3AE-06 11 117076871 117076871 C T PCSK7 Missense_Mutation p.V734M 0.31 deleterious_low_confidence(0.02) benign(0.008) TCGA-EE-A3AE-06 11 118071218 118071218 C T AMICA1 Silent p.L294L 0.37 TCGA-EE-A3AE-06 11 119212430 119212430 A C MFRP Missense_Mutation p.L523R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 120170364 120170364 T C POU2F3 Missense_Mutation p.L99P 0.30 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AE-06 11 120312858 120312858 G A ARHGEF12 Missense_Mutation p.E417K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 11 120833291 120833291 G A GRIK4 Missense_Mutation p.E723K 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 120989117 120989117 C T TECTA Missense_Mutation p.S298F 0.35 deleterious(0) benign(0.322) TCGA-EE-A3AE-06 11 120989291 120989291 C T TECTA Missense_Mutation p.S356F 0.39 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A3AE-06 11 1213691 1213691 C T MUC5AC RNA 0.37 TCGA-EE-A3AE-06 11 121416090 121416090 G A SORL1 Missense_Mutation p.R668K 0.21 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AE-06 11 121420724 121420724 C T SORL1 Missense_Mutation p.P703S 0.57 deleterious(0.01) benign(0.029) TCGA-EE-A3AE-06 11 122720866 122720866 C T CRTAM Missense_Mutation p.S46F 0.27 tolerated(0.1) possibly_damaging(0.532) TCGA-EE-A3AE-06 11 122775031 122775031 G A C11orf63 Missense_Mutation p.R248Q 0.36 tolerated(0.09) possibly_damaging(0.454) TCGA-EE-A3AE-06 11 122944126 122944126 G A CLMP 3'UTR 0.42 TCGA-EE-A3AE-06 11 123813765 123813765 G A OR6T1 Missense_Mutation p.R261C 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AE-06 11 123813841 123813841 C T OR6T1 Silent p.R235R 0.45 TCGA-EE-A3AE-06 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.26 tolerated(1) benign(0) TCGA-EE-A3AE-06 11 124180455 124180455 C T OR8D1 Missense_Mutation p.D70N 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 11 124294684 124294684 G A OR8B4 Silent p.F28F 0.38 TCGA-EE-A3AE-06 11 124740159 124740159 C T ROBO3 Silent p.L289L 0.32 TCGA-EE-A3AE-06 11 124794652 124794652 C T HEPACAM Silent p.G133G 0.31 TCGA-EE-A3AE-06 11 126176518 126176518 G A DCPS Silent p.E85E 0.45 TCGA-EE-A3AE-06 11 1269230 1269230 G A MUC5B Missense_Mutation p.G3707E 0.39 unknown(0) TCGA-EE-A3AE-06 11 130275705 130275705 G A ADAMTS8 Silent p.F806F 0.33 TCGA-EE-A3AE-06 11 134253616 134253616 G A B3GAT1 Silent p.F193F 0.36 TCGA-EE-A3AE-06 11 134257615 134257615 G A B3GAT1 Intron 0.33 TCGA-EE-A3AE-06 11 14278196 14278196 G A SPON1 RNA 0.32 TCGA-EE-A3AE-06 11 17167466 17167466 C G PIK3C2A Silent p.V528V 0.33 TCGA-EE-A3AE-06 11 18195094 18195094 C T MRGPRX4 Silent p.I97I 0.37 TCGA-EE-A3AE-06 11 18722508 18722508 C T TMEM86A Missense_Mutation p.P17L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 11 18955715 18955715 G A MRGPRX1 Missense_Mutation p.S206F 0.34 deleterious(0.03) possibly_damaging(0.81) TCGA-EE-A3AE-06 11 20676289 20676289 G A SLC6A5 Missense_Mutation p.D757N 0.30 tolerated(0.21) benign(0.074) TCGA-EE-A3AE-06 11 31086634 31086634 C T DCDC1 Missense_Mutation p.E789K 0.44 deleterious(0.03) probably_damaging(0.953) TCGA-EE-A3AE-06 11 31823165 31823165 C T PAX6 Missense_Mutation p.E115K 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 32439129 32439129 A G WT1 Missense_Mutation p.L315S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-EE-A3AE-06 11 32955313 32955313 C T QSER1 Missense_Mutation p.P708S 0.41 deleterious(0.02) benign(0.007) TCGA-EE-A3AE-06 11 33127292 33127292 A G CSTF3 Intron 0.35 TCGA-EE-A3AE-06 11 4406621 4406621 G A TRIM21 Missense_Mutation p.P441L 0.36 tolerated(0.05) probably_damaging(0.961) TCGA-EE-A3AE-06 11 4406950 4406950 G A TRIM21 Silent p.V331V 0.50 TCGA-EE-A3AE-06 11 45268028 45268028 G A SYT13 Silent p.S294S 0.12 TCGA-EE-A3AE-06 11 45671632 45671632 T C CHST1 Missense_Mutation p.N281S 0.44 tolerated(0.78) benign(0.018) TCGA-EE-A3AE-06 11 45891260 45891260 C T CRY2 Silent p.I383I 0.33 TCGA-EE-A3AE-06 11 45891313 45891313 T G CRY2 Missense_Mutation p.V401G 0.47 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AE-06 11 46398734 46398734 C T DGKZ Missense_Mutation p.P960S 0.35 tolerated(0.81) benign(0.011) TCGA-EE-A3AE-06 11 4661314 4661314 C T OR51D1 Silent p.F98F 0.40 TCGA-EE-A3AE-06 11 46897155 46897155 G A LRP4 Silent p.T1259T 0.28 TCGA-EE-A3AE-06 11 4825161 4825161 G A OR52R1 Silent p.I150I 0.44 TCGA-EE-A3AE-06 11 48285814 48285814 G A OR4X1 Missense_Mutation p.M134I 0.28 deleterious(0.01) benign(0.134) TCGA-EE-A3AE-06 11 49974034 49974034 A C OR4C13 Missense_Mutation p.K20N 0.48 tolerated_low_confidence(0.27) benign(0.009) TCGA-EE-A3AE-06 11 5246714 5246714 T A HBB 3'UTR 0.59 TCGA-EE-A3AE-06 11 5255402 5255402 G A HBD Missense_Mutation p.S45F 0.41 deleterious(0.01) benign(0.032) TCGA-EE-A3AE-06 11 5322889 5322889 G A OR51B4 Silent p.F96F 0.32 TCGA-EE-A3AE-06 11 5345204 5345204 C T OR51B2 Silent p.V108V 0.31 TCGA-EE-A3AE-06 11 5410985 5410985 T G OR51M1 Missense_Mutation p.F119L 0.34 tolerated(0.29) probably_damaging(0.996) TCGA-EE-A3AE-06 11 5444289 5444289 C T OR51Q1 Missense_Mutation p.P287S 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 11 55038319 55038319 C T TRIM48 3'UTR 0.45 TCGA-EE-A3AE-06 11 55111342 55111342 C T OR4A16 Silent p.F222F 0.27 TCGA-EE-A3AE-06 11 5529376 5529376 G A UBQLN3 Silent p.I471I 0.33 TCGA-EE-A3AE-06 11 55322137 55322137 C T OR4C15 Silent p.L119L 0.21 TCGA-EE-A3AE-06 11 55418781 55418781 G A OR4S2 Missense_Mutation p.M134I 0.84 deleterious(0.01) benign(0.004) TCGA-EE-A3AE-06 11 55432975 55432975 C T OR4C6 Silent p.I111I 0.45 TCGA-EE-A3AE-06 11 55927077 55927077 G A OR8K5 Silent p.S239S 0.22 TCGA-EE-A3AE-06 11 55944788 55944788 C T OR5J2 Missense_Mutation p.S232L 0.33 deleterious(0.01) benign(0.214) TCGA-EE-A3AE-06 11 56143987 56143987 G A OR8U1 Silent p.E296E 0.30 TCGA-EE-A3AE-06 11 56237466 56237466 T A OR5M3 Missense_Mutation p.I170F 0.26 tolerated(0.13) benign(0.001) TCGA-EE-A3AE-06 11 56756999 56756999 G A OR5AK2 Missense_Mutation p.G204E 0.45 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A3AE-06 11 59599244 59599244 C T GIF Missense_Mutation p.G367S 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AE-06 11 59807889 59807889 C T OOSP2 5'UTR 0.36 TCGA-EE-A3AE-06 11 60235761 60235761 G A MS4A1 Silent p.Q238Q 0.29 TCGA-EE-A3AE-06 11 60470895 60470895 C T MS4A8 Silent p.S88S 0.34 TCGA-EE-A3AE-06 11 61495658 61495658 G A DAGLA Missense_Mutation p.E224K 0.36 tolerated(0.08) benign(0.044) TCGA-EE-A3AE-06 11 61511320 61511320 G A DAGLA Missense_Mutation p.E830K 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A3AE-06 11 61539185 61539185 G A MYRF Silent p.Q318Q 0.37 TCGA-EE-A3AE-06 11 6191460 6191460 G A OR52B2 Missense_Mutation p.L33F 0.26 tolerated(1) benign(0.006) TCGA-EE-A3AE-06 11 62295345 62295345 G A AHNAK Missense_Mutation p.P2182S 0.37 probably_damaging(0.999) TCGA-EE-A3AE-06 11 62483386 62483386 C T HNRNPUL2 Missense_Mutation p.D669N 0.26 tolerated(0.44) possibly_damaging(0.768) TCGA-EE-A3AE-06 11 62678024 62678024 G A CHRM1 Silent p.L183L 0.29 TCGA-EE-A3AE-06 11 62751815 62751815 G A SLC22A6 Silent p.F116F 0.34 TCGA-EE-A3AE-06 11 62768198 62768198 G A SLC22A8 Missense_Mutation p.S144F 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 62933713 62933713 G A SLC22A25 Missense_Mutation p.P363L 0.42 deleterious(0.05) benign(0.02) TCGA-EE-A3AE-06 11 63357683 63357683 G A PLA2G16 Silent p.I92I 0.37 TCGA-EE-A3AE-06 11 64112200 64112200 C T CCDC88B Silent p.A729A 0.35 TCGA-EE-A3AE-06 11 64359245 64359245 C T SLC22A12 Silent p.L73L 0.27 TCGA-EE-A3AE-06 11 64359326 64359326 G A SLC22A12 Missense_Mutation p.D100N 0.60 tolerated(0.1) benign(0.035) TCGA-EE-A3AE-06 11 64366015 64366015 C T SLC22A12 Silent p.L286L 0.70 TCGA-EE-A3AE-06 11 64825817 64825817 C T NAALADL1 Silent p.E59E 0.17 TCGA-EE-A3AE-06 11 65374967 65374967 C T MAP3K11 Silent p.E421E 0.40 TCGA-EE-A3AE-06 11 65425868 65425868 G A RELA Missense_Mutation p.P256L 0.39 deleterious(0) possibly_damaging(0.874) TCGA-EE-A3AE-06 11 66468227 66468227 C T SPTBN2 Missense_Mutation p.E1115K 0.33 deleterious(0.02) possibly_damaging(0.735) TCGA-EE-A3AE-06 11 66468228 66468228 C T SPTBN2 Silent p.V1114V 0.33 TCGA-EE-A3AE-06 11 6942899 6942899 C T OR2D3 Missense_Mutation p.L223F 0.43 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AE-06 11 71277296 71277296 G A KRTAP5-10 3'UTR 0.35 TCGA-EE-A3AE-06 11 71946937 71946937 C T INPPL1 Missense_Mutation p.S929F 0.39 tolerated(0.45) benign(0.074) TCGA-EE-A3AE-06 11 71946938 71946938 C T INPPL1 Silent p.S929S 0.40 TCGA-EE-A3AE-06 11 73074350 73074350 C T ARHGEF17 Missense_Mutation p.P1699L 0.29 deleterious(0.05) benign(0.22) TCGA-EE-A3AE-06 11 7334767 7334767 G A SYT9 Silent p.G213G 0.33 TCGA-EE-A3AE-06 11 76969473 76969473 G A GDPD4 Silent p.F274F 0.34 TCGA-EE-A3AE-06 11 76980019 76980019 C T GDPD4 Missense_Mutation p.E192K 0.29 tolerated(0.42) benign(0.03) TCGA-EE-A3AE-06 11 774016 774016 G A PDDC1 Missense_Mutation p.S80F 0.18 deleterious(0) possibly_damaging(0.702) TCGA-EE-A3AE-06 11 77910590 77910590 C T USP35 Intron 0.30 TCGA-EE-A3AE-06 11 8117065 8117065 C T TUB Silent p.L195L 0.49 TCGA-EE-A3AE-06 11 82642923 82642923 C T C11orf82 Silent p.F181F 0.32 TCGA-EE-A3AE-06 11 83195190 83195190 C T DLG2 Missense_Mutation p.E759K 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A3AE-06 11 85436200 85436200 G A SYTL2 Missense_Mutation p.P434S 0.26 tolerated(0.28) benign(0.046) TCGA-EE-A3AE-06 11 88323883 88323883 C A GRM5 Nonsense_Mutation p.G526* 0.37 TCGA-EE-A3AE-06 11 89135701 89135701 C T NOX4 Silent p.L213L 0.34 TCGA-EE-A3AE-06 11 8969979 8969979 G A TMEM9B Missense_Mutation p.S162F 0.31 deleterious(0.04) probably_damaging(0.93) TCGA-EE-A3AE-06 11 9009685 9009685 T A NRIP3 Missense_Mutation p.M107L 0.37 tolerated(1) benign(0.01) TCGA-EE-A3AE-06 11 92086102 92086102 C T FAT3 Missense_Mutation p.S275L 0.36 benign(0.001) TCGA-EE-A3AE-06 11 92616261 92616261 C T FAT3 Silent p.R4213R 0.38 TCGA-EE-A3AE-06 11 93913320 93913320 C T PANX1 Silent p.L366L 0.36 TCGA-EE-A3AE-06 11 93913321 93913321 C T PANX1 Silent p.L367L 0.36 TCGA-EE-A3AE-06 11 94113596 94113596 G A GPR83 Missense_Mutation p.H331Y 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.24 tolerated(0.09) possibly_damaging(0.653) TCGA-EE-A3AE-06 12 100550946 100550946 C T AC010203.1 3'Flank 0.67 TCGA-EE-A3AE-06 12 1005522 1005522 C T WNK1 Missense_Mutation p.R1957C 0.71 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 12 100806574 100806574 C T SLC17A8 Silent p.L405L 0.80 TCGA-EE-A3AE-06 12 101413904 101413904 G A ANO4 Missense_Mutation p.G241E 0.67 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A3AE-06 12 101477506 101477506 G A ANO4 Missense_Mutation p.M447I 0.91 tolerated(0.72) benign(0.002) TCGA-EE-A3AE-06 12 101493435 101493435 G A ANO4 Missense_Mutation p.E661K 0.76 deleterious(0) probably_damaging(0.911) TCGA-EE-A3AE-06 12 104326097 104326097 A G HSP90B1 Silent p.Q65Q 0.67 TCGA-EE-A3AE-06 12 10569303 10569303 G A KLRC3 Missense_Mutation p.P184S 0.96 tolerated(0.17) benign(0.067) TCGA-EE-A3AE-06 12 108043183 108043183 G A BTBD11 Intron 0.50 TCGA-EE-A3AE-06 12 109999605 109999605 G A MMAB Missense_Mutation p.S134L 0.67 deleterious(0.04) benign(0.401) TCGA-EE-A3AE-06 12 11083428 11083428 A T PRH2 Nonsense_Mutation p.K90* 0.56 TCGA-EE-A3AE-06 12 112174755 112174755 C T ACAD10 Missense_Mutation p.S585F 0.85 deleterious(0) probably_damaging(0.931) TCGA-EE-A3AE-06 12 113537768 113537768 C T RASAL1 Missense_Mutation p.R796Q 0.46 tolerated_low_confidence(1) benign(0.002) TCGA-EE-A3AE-06 12 113543632 113543632 G A RASAL1 Silent p.L574L 0.29 TCGA-EE-A3AE-06 12 114804111 114804111 G A TBX5 Missense_Mutation p.L281F 0.50 deleterious(0.04) benign(0.303) TCGA-EE-A3AE-06 12 11546785 11546785 C T PRB2 Missense_Mutation p.G76E 0.34 tolerated(0.56) unknown(0) TCGA-EE-A3AE-06 12 117718653 117718653 G A NOS1 Silent p.F467F 0.74 TCGA-EE-A3AE-06 12 117909112 117909112 C T KSR2 Missense_Mutation p.E866K 0.83 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AE-06 12 119540113 119540113 C T SRRM4 Silent p.A68A 0.74 TCGA-EE-A3AE-06 12 121698321 121698321 C T CAMKK2 Intron 0.81 TCGA-EE-A3AE-06 12 121880320 121880320 G A KDM2B Missense_Mutation p.S975L 0.75 tolerated_low_confidence(0.06) benign(0.006) TCGA-EE-A3AE-06 12 122656888 122656888 C T IL31 3'UTR 0.72 TCGA-EE-A3AE-06 12 123214855 123214855 C T HCAR1 Missense_Mutation p.G11E 0.71 tolerated(0.21) probably_damaging(0.999) TCGA-EE-A3AE-06 12 124330297 124330297 C T DNAH10 Silent p.I1719I 0.94 TCGA-EE-A3AE-06 12 124418052 124418052 G A DNAH10 Missense_Mutation p.G4373R 0.65 benign(0.012) TCGA-EE-A3AE-06 12 124841213 124841213 G A NCOR2 Silent p.P1072P 0.74 TCGA-EE-A3AE-06 12 124979739 124979739 G A NCOR2 Missense_Mutation p.P20L 0.41 unknown(0) TCGA-EE-A3AE-06 12 124979740 124979740 G A NCOR2 Missense_Mutation p.P20S 0.41 unknown(0) TCGA-EE-A3AE-06 12 132334600 132334600 C T MMP17 Silent p.S486S 0.67 TCGA-EE-A3AE-06 12 13906432 13906432 G A GRIN2B Missense_Mutation p.L277F 0.78 deleterious(0) possibly_damaging(0.782) TCGA-EE-A3AE-06 12 14996116 14996116 C T ART4 5'UTR 0.88 TCGA-EE-A3AE-06 12 18234201 18234201 T A RERGL Missense_Mutation p.K181M 0.40 deleterious(0) possibly_damaging(0.702) TCGA-EE-A3AE-06 12 1994221 1994221 C T CACNA2D4 Missense_Mutation p.E364K 0.81 tolerated(0.5) benign(0.006) TCGA-EE-A3AE-06 12 21028385 21028385 G A SLCO1B3 Missense_Mutation p.G315E 0.50 tolerated(1) benign(0.006) TCGA-EE-A3AE-06 12 22089541 22089541 G A ABCC9 Missense_Mutation p.S23F 0.88 deleterious(0.03) benign(0.058) TCGA-EE-A3AE-06 12 2566793 2566793 G A CACNA1C Silent p.G226G 0.79 TCGA-EE-A3AE-06 12 2788691 2788691 C T CACNA1C Nonsense_Mutation p.Q1773* 0.74 TCGA-EE-A3AE-06 12 33030950 33030950 G A PKP2 Silent p.S288S 0.70 TCGA-EE-A3AE-06 12 40643653 40643653 A T LRRK2 Missense_Mutation p.L288F 0.78 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AE-06 12 41966347 41966347 G A PDZRN4 Missense_Mutation p.G589E 0.93 tolerated(0.13) benign(0.036) TCGA-EE-A3AE-06 12 44770458 44770458 T C TMEM117 Silent p.I283I 0.86 TCGA-EE-A3AE-06 12 49359897 49359897 C T WNT10B Nonsense_Mutation p.W384* 0.82 TCGA-EE-A3AE-06 12 5154958 5154958 G A KCNA5 Missense_Mutation p.D549N 0.84 tolerated(0.2) possibly_damaging(0.673) TCGA-EE-A3AE-06 12 51868969 51868969 G A SLC4A8 Silent p.T717T 0.49 TCGA-EE-A3AE-06 12 52056817 52056817 C T SCN8A Silent p.I72I 0.57 TCGA-EE-A3AE-06 12 52842698 52842698 G A KRT6B Silent p.T377T 0.86 TCGA-EE-A3AE-06 12 52967139 52967139 C T KRT74 Silent p.R141R 0.81 TCGA-EE-A3AE-06 12 53233725 53233725 C T KRT78 Missense_Mutation p.G364E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 12 53453362 53453362 C T TENC1 Missense_Mutation p.S656L 0.81 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AE-06 12 53994769 53994769 G A ATF7 Missense_Mutation p.P6S 0.31 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A3AE-06 12 55688987 55688987 G A OR6C6 Silent p.F10F 0.79 TCGA-EE-A3AE-06 12 55715062 55715062 C T OR6C1 Missense_Mutation p.P227S 0.78 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A3AE-06 12 55820678 55820678 C T OR6C76 Missense_Mutation p.S214F 0.75 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A3AE-06 12 55863651 55863651 G A OR6C70 Missense_Mutation p.S91F 0.86 deleterious_low_confidence(0.01) possibly_damaging(0.704) TCGA-EE-A3AE-06 12 55945754 55945754 C G OR6C4 Silent p.L248L 0.73 TCGA-EE-A3AE-06 12 56031407 56031407 C T OR10P1 Silent p.S244S 0.29 TCGA-EE-A3AE-06 12 58009385 58009385 C T ARHGEF25 Nonsense_Mutation p.R416* 0.86 TCGA-EE-A3AE-06 12 59271541 59271541 G A LRIG3 Missense_Mutation p.P726L 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 12 6636077 6636077 C T NCAPD2 Missense_Mutation p.P919S 0.57 tolerated(0.3) benign(0.008) TCGA-EE-A3AE-06 12 6958788 6958788 G A CDCA3 Missense_Mutation p.P162L 0.85 tolerated(0.64) benign(0.009) TCGA-EE-A3AE-06 12 71094958 71094958 C T PTPRR Missense_Mutation p.D385N 0.86 tolerated(0.24) benign(0.003) TCGA-EE-A3AE-06 12 71094984 71094984 C T PTPRR Missense_Mutation p.R376Q 0.76 deleterious(0.01) benign(0.286) TCGA-EE-A3AE-06 12 7301721 7301721 C T CLSTN3 Silent p.F667F 0.48 TCGA-EE-A3AE-06 12 7843051 7843051 G A GDF3 Missense_Mutation p.P173L 0.79 tolerated(0.08) benign(0.368) TCGA-EE-A3AE-06 12 93150150 93150150 G A PLEKHG7 Missense_Mutation p.G228E 0.81 tolerated(0.07) possibly_damaging(0.634) TCGA-EE-A3AE-06 12 94976115 94976115 A T TMCC3 Missense_Mutation p.V93D 0.84 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 12 97137822 97137822 G A C12orf55 Missense_Mutation p.E2528K 0.68 deleterious(0.04) benign(0.135) TCGA-EE-A3AE-06 12 99548274 99548274 C T ANKS1B Intron 0.75 TCGA-EE-A3AE-06 13 103703668 103703668 G A SLC10A2 Missense_Mutation p.P234S 0.79 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AE-06 13 113485772 113485772 C T ATP11A Silent p.V435V 0.75 TCGA-EE-A3AE-06 13 20411946 20411946 C T ZMYM5 Silent p.K296K 0.26 TCGA-EE-A3AE-06 13 20763627 20763627 G A GJB2 Missense_Mutation p.R32C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 13 25882031 25882031 C T NUPL1 Silent p.T65T 0.51 TCGA-EE-A3AE-06 13 26129151 26129151 G A ATP8A2 Missense_Mutation p.G403E 0.22 tolerated(1) benign(0.002) TCGA-EE-A3AE-06 13 27332999 27332999 G A GPR12 Silent p.S322S 0.59 TCGA-EE-A3AE-06 13 27333418 27333418 G A GPR12 Nonsense_Mutation p.R183* 0.27 TCGA-EE-A3AE-06 13 28622446 28622446 G A FLT3 Missense_Mutation p.P391S 0.53 deleterious(0.03) possibly_damaging(0.494) TCGA-EE-A3AE-06 13 28959163 28959163 C T FLT1 Missense_Mutation p.E659K 0.21 deleterious(0) benign(0.018) TCGA-EE-A3AE-06 13 29608082 29608082 C T MTUS2 Missense_Mutation p.P766S 0.23 tolerated(0.06) probably_damaging(1) TCGA-EE-A3AE-06 13 31498681 31498681 C T MEDAG 3'UTR 0.31 TCGA-EE-A3AE-06 13 32811687 32811687 C T FRY Silent p.S1994S 0.25 TCGA-EE-A3AE-06 13 35615076 35615076 G A NBEA Missense_Mutation p.G101S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 13 36348751 36348751 G A DCLK1 3'UTR 0.36 TCGA-EE-A3AE-06 13 36348752 36348752 G A DCLK1 3'UTR 0.45 TCGA-EE-A3AE-06 13 38166278 38166278 G A POSTN Missense_Mutation p.P81L 0.14 deleterious(0) probably_damaging(0.939) TCGA-EE-A3AE-06 13 38166279 38166279 G A POSTN Missense_Mutation p.P81S 0.14 deleterious(0) possibly_damaging(0.792) TCGA-EE-A3AE-06 13 38320265 38320265 C T TRPC4 Missense_Mutation p.E236K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 13 42733442 42733442 A T DGKH Silent p.A221A 0.36 TCGA-EE-A3AE-06 13 43934166 43934166 C T ENOX1 Missense_Mutation p.R137Q 0.31 deleterious(0) possibly_damaging(0.722) TCGA-EE-A3AE-06 13 46701611 46701611 G A LCP1 3'UTR 0.46 TCGA-EE-A3AE-06 13 58208265 58208265 C T PCDH17 Missense_Mutation p.P529S 0.30 tolerated(0.76) possibly_damaging(0.609) TCGA-EE-A3AE-06 13 72440848 72440848 G A DACH1 Silent p.I20I 0.43 TCGA-EE-A3AE-06 13 73335651 73335651 G A DIS3 Silent p.F840F 0.22 TCGA-EE-A3AE-06 13 74420439 74420439 G A KLF12 Silent p.P65P 0.46 TCGA-EE-A3AE-06 13 77751993 77751993 G A MYCBP2 Missense_Mutation p.P1706S 0.42 probably_damaging(0.999) TCGA-EE-A3AE-06 13 78320734 78320734 A C SLAIN1 Silent p.T170T 0.42 TCGA-EE-A3AE-06 13 78320735 78320735 T G SLAIN1 Missense_Mutation p.C171G 0.42 tolerated(0.42) unknown(0) TCGA-EE-A3AE-06 13 90883465 90883465 A G MIR622 RNA 0.41 TCGA-EE-A3AE-06 13 92345938 92345938 C T GPC5 Missense_Mutation p.L275F 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AE-06 13 96293735 96293735 G A DZIP1 Silent p.F137F 0.66 TCGA-EE-A3AE-06 13 96453993 96453993 G A UGGT2 3'UTR 0.80 TCGA-EE-A3AE-06 13 98009744 98009744 C T MBNL2 Silent p.P271P 0.55 TCGA-EE-A3AE-06 13 98671844 98671844 C T IPO5 Missense_Mutation p.P967L 0.80 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AE-06 14 100377902 100377902 C T EML1 Missense_Mutation p.R514C 0.46 deleterious(0.02) benign(0.001) TCGA-EE-A3AE-06 14 100612929 100612929 G A DEGS2 3'UTR 0.60 TCGA-EE-A3AE-06 14 100612930 100612930 G A DEGS2 3'UTR 0.60 TCGA-EE-A3AE-06 14 101521040 101521040 T C MIR134 RNA 0.54 TCGA-EE-A3AE-06 14 103336638 103336638 C T TRAF3 Missense_Mutation p.P34S 0.31 deleterious(0.04) possibly_damaging(0.78) TCGA-EE-A3AE-06 14 103442265 103442265 G A CDC42BPB Missense_Mutation p.R448W 0.41 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AE-06 14 103596364 103596364 G A TNFAIP2 Missense_Mutation p.R334Q 0.49 deleterious(0.05) possibly_damaging(0.861) TCGA-EE-A3AE-06 14 105415878 105415878 C T AHNAK2 Silent p.L1970L 0.48 TCGA-EE-A3AE-06 14 106307402 106307402 C T IGHD Missense_Mutation p.G213R 0.36 tolerated(0.33) benign(0.167) TCGA-EE-A3AE-06 14 106320631 106320631 G A IGHM Silent p.F393F 0.24 TCGA-EE-A3AE-06 14 106329415 106329415 G A IGHJ6 Silent p.V18V 0.55 TCGA-EE-A3AE-06 14 106733378 106733378 G A IGHV1-24 Silent p.V39V 0.31 TCGA-EE-A3AE-06 14 106805507 106805507 G T IGHV4-31 Missense_Mutation p.P19H 0.41 deleterious_low_confidence(0) benign(0.007) TCGA-EE-A3AE-06 14 107013068 107013068 C T IGHV3-49 Missense_Mutation p.G76D 0.29 tolerated_low_confidence(0.07) benign(0.02) TCGA-EE-A3AE-06 14 107113954 107113954 G A IGHV3-64 Silent p.F47F 0.16 TCGA-EE-A3AE-06 14 107199365 107199365 G A IGHV3-72 Silent p.F9F 0.29 TCGA-EE-A3AE-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.32 TCGA-EE-A3AE-06 14 20404348 20404348 G A OR4K1 Missense_Mutation p.D175N 0.32 deleterious(0.02) benign(0.029) TCGA-EE-A3AE-06 14 20483167 20483167 G A OR4K14 Silent p.F62F 0.38 TCGA-EE-A3AE-06 14 20666099 20666099 C T OR11G2 Missense_Mutation p.S202F 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3AE-06 14 20711184 20711184 C T OR11H4 Silent p.F78F 0.45 TCGA-EE-A3AE-06 14 20845516 20845516 G A TEP1 Missense_Mutation p.S2004F 0.37 deleterious(0.04) benign(0.405) TCGA-EE-A3AE-06 14 20940628 20940628 G A PNP Missense_Mutation p.R58Q 0.60 tolerated(0.74) benign(0.001) TCGA-EE-A3AE-06 14 21108993 21108993 T C OR6S1 Silent p.P286P 0.56 TCGA-EE-A3AE-06 14 21360412 21360412 G A RNASE3 3'UTR 0.24 TCGA-EE-A3AE-06 14 22134223 22134223 G A OR4E2 Silent p.T309T 0.46 TCGA-EE-A3AE-06 14 22205179 22205179 C T TRAV4 Silent p.I81I 0.50 TCGA-EE-A3AE-06 14 22363073 22363073 G A TRAV8-4 Silent p.K68K 0.56 TCGA-EE-A3AE-06 14 22409336 22409336 G A TRAV9-2 5'UTR 0.22 TCGA-EE-A3AE-06 14 22521215 22521215 G A TRAV21 Missense_Mutation p.G79E 0.48 tolerated(0.13) possibly_damaging(0.46) TCGA-EE-A3AE-06 14 22564744 22564744 G A TRDV1 Missense_Mutation p.M65I 0.60 tolerated(0.09) possibly_damaging(0.527) TCGA-EE-A3AE-06 14 22600739 22600739 C T TRAV8-7 Silent p.I28I 0.33 TCGA-EE-A3AE-06 14 22690118 22690118 C T TRAV35 Missense_Mutation p.P26L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 14 23346293 23346293 C T LRP10 Missense_Mutation p.P567S 0.56 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A3AE-06 14 23512017 23512017 G A PSMB11 Missense_Mutation p.D195N 0.35 tolerated(0.07) benign(0.121) TCGA-EE-A3AE-06 14 25043013 25043013 C T CTSG Missense_Mutation p.D200N 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 14 25043014 25043014 C T CTSG Silent p.G199G 0.30 TCGA-EE-A3AE-06 14 26918102 26918102 G A NOVA1 Missense_Mutation p.A196V 0.34 tolerated(0.22) unknown(0) TCGA-EE-A3AE-06 14 31619269 31619269 G A HECTD1 Silent p.I697I 0.32 TCGA-EE-A3AE-06 14 31814460 31814460 G A HEATR5A Missense_Mutation p.S671L 0.23 deleterious(0) possibly_damaging(0.76) TCGA-EE-A3AE-06 14 33293351 33293351 C T AKAP6 Missense_Mutation p.S2111L 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 14 33836458 33836458 G A NPAS3 Missense_Mutation p.G151E 0.12 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AE-06 14 35072581 35072581 G A SNX6 Silent p.F175F 0.18 TCGA-EE-A3AE-06 14 39645728 39645728 C T PNN Intron 0.37 TCGA-EE-A3AE-06 14 42356690 42356690 C T LRFN5 Missense_Mutation p.L288F 0.53 deleterious(0.01) possibly_damaging(0.652) TCGA-EE-A3AE-06 14 52957679 52957679 G A TXNDC16 Silent p.L267L 0.35 TCGA-EE-A3AE-06 14 53223323 53223323 C T STYX Silent p.F99F 0.43 TCGA-EE-A3AE-06 14 55902652 55902652 C T TBPL2 Silent p.Q203Q 0.52 TCGA-EE-A3AE-06 14 60213184 60213184 G A RTN1 Missense_Mutation p.S86F 0.62 deleterious(0.03) benign(0.004) TCGA-EE-A3AE-06 14 60923639 60923639 C T C14orf39 Missense_Mutation p.E452K 0.30 deleterious(0.01) benign(0.021) TCGA-EE-A3AE-06 14 61995922 61995922 C T RP11-47I22.4 Silent p.I26I 0.44 TCGA-EE-A3AE-06 14 65252598 65252598 C T SPTB Silent p.E1211E 0.32 TCGA-EE-A3AE-06 14 70420162 70420162 G A SMOC1 Silent p.L97L 0.53 TCGA-EE-A3AE-06 14 70420177 70420177 C T SMOC1 Silent p.A102A 0.32 TCGA-EE-A3AE-06 14 70925007 70925007 G A ADAM21 Missense_Mutation p.G264E 0.55 tolerated(0.83) benign(0.013) TCGA-EE-A3AE-06 14 72055040 72055040 T C SIPA1L1 Missense_Mutation p.S151P 0.40 tolerated(0.28) benign(0.005) TCGA-EE-A3AE-06 14 72196830 72196830 C T SIPA1L1 Missense_Mutation p.A1579V 0.20 deleterious(0.03) benign(0.109) TCGA-EE-A3AE-06 14 73578360 73578360 C T RBM25 Silent p.P714P 0.22 TCGA-EE-A3AE-06 14 73716730 73716730 G A PAPLN Missense_Mutation p.E125K 0.55 deleterious(0) possibly_damaging(0.767) TCGA-EE-A3AE-06 14 74824458 74824458 C T VRTN Silent p.F324F 0.33 TCGA-EE-A3AE-06 14 76620686 76620686 C T GPATCH2L Intron 0.52 TCGA-EE-A3AE-06 14 77236309 77236309 C T VASH1 Missense_Mutation p.P105S 0.48 tolerated(0.41) probably_damaging(0.998) TCGA-EE-A3AE-06 14 77705059 77705059 C T TMEM63C Missense_Mutation p.T225I 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3AE-06 14 77910664 77910664 G A VIPAS39 Silent p.F175F 0.13 TCGA-EE-A3AE-06 14 90650488 90650488 G A KCNK13 Missense_Mutation p.G123E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 14 92088094 92088094 C T CATSPERB Silent p.R706R 0.35 TCGA-EE-A3AE-06 14 92336536 92336536 G A FBLN5 3'UTR 0.50 TCGA-EE-A3AE-06 14 94395632 94395632 G A FAM181A 3'UTR 0.42 TCGA-EE-A3AE-06 14 94716540 94716540 G A PPP4R4 Missense_Mutation p.R548Q 0.39 deleterious(0.01) possibly_damaging(0.518) TCGA-EE-A3AE-06 14 94912841 94912841 C T SERPINA11 Silent p.K248K 0.33 TCGA-EE-A3AE-06 14 96130015 96130015 T A TCL6 RNA 0.39 TCGA-EE-A3AE-06 14 96157134 96157134 C T TCL1B Missense_Mutation p.S75F 0.39 tolerated(0.77) benign(0.002) TCGA-EE-A3AE-06 14 99641186 99641186 C T BCL11B Missense_Mutation p.E663K 0.36 tolerated(0.15) benign(0.017) TCGA-EE-A3AE-06 15 100340249 100340249 C T DNM1P46 RNA 0.14 TCGA-EE-A3AE-06 15 22867576 22867576 C T TUBGCP5 Silent p.F884F 0.54 TCGA-EE-A3AE-06 15 23931405 23931405 C T NDN Silent p.E320E 0.59 TCGA-EE-A3AE-06 15 25227216 25227216 C T SNRPN 3'Flank 0.26 TCGA-EE-A3AE-06 15 25302060 25302060 G A SNORD116-3 RNA 0.50 TCGA-EE-A3AE-06 15 25333955 25333955 C T SNORD116-20 RNA 0.22 TCGA-EE-A3AE-06 15 25481240 25481240 G A SNORD115-36 RNA 0.64 TCGA-EE-A3AE-06 15 25616063 25616063 G A UBE3A Missense_Mutation p.P423S 0.74 tolerated(0.18) benign(0.052) TCGA-EE-A3AE-06 15 27572069 27572069 C T GABRG3 Silent p.I128I 0.17 TCGA-EE-A3AE-06 15 28502359 28502359 G A HERC2 Missense_Mutation p.P789S 0.24 possibly_damaging(0.622) TCGA-EE-A3AE-06 15 28525345 28525345 G A HERC2 Silent p.A137A 0.66 TCGA-EE-A3AE-06 15 29390742 29390742 C T APBA2 Missense_Mutation p.S434F 0.18 deleterious(0) probably_damaging(0.954) TCGA-EE-A3AE-06 15 29390743 29390743 C T APBA2 Silent p.S434S 0.19 TCGA-EE-A3AE-06 15 30659728 30659728 G A CHRFAM7A Nonsense_Mutation p.Q205* 0.46 TCGA-EE-A3AE-06 15 31323279 31323279 G A TRPM1 Missense_Mutation p.P1029S 0.15 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AE-06 15 33858947 33858947 C T RYR3 Silent p.S405S 0.21 TCGA-EE-A3AE-06 15 34130152 34130152 G A RYR3 Missense_Mutation p.G3991R 0.16 probably_damaging(0.994) TCGA-EE-A3AE-06 15 34543112 34543112 G A SLC12A6 Missense_Mutation p.P494S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 15 40235622 40235622 C G EIF2AK4 Nonsense_Mutation p.S99* 0.57 TCGA-EE-A3AE-06 15 40942524 40942524 G A CASC5 Silent p.E2066E 0.59 TCGA-EE-A3AE-06 15 41060239 41060239 C T DNAJC17 Missense_Mutation p.D272N 0.65 deleterious(0) probably_damaging(0.946) TCGA-EE-A3AE-06 15 41068815 41068815 G A DNAJC17 Silent p.A102A 0.15 TCGA-EE-A3AE-06 15 41106470 41106470 C T ZFYVE19 3'UTR 0.54 TCGA-EE-A3AE-06 15 42371860 42371860 C T PLA2G4D Missense_Mutation p.E398K 0.71 tolerated(0.41) benign(0.003) TCGA-EE-A3AE-06 15 43531464 43531464 C T TGM5 Nonsense_Mutation p.W334* 0.22 TCGA-EE-A3AE-06 15 43568686 43568686 C T TGM7 Silent p.K700K 0.15 TCGA-EE-A3AE-06 15 43653379 43653380 - TAT ZSCAN29 In_Frame_Ins p.Y818dup 0.25 TCGA-EE-A3AE-06 15 45270688 45270688 T G C15orf43 Silent p.G175G 0.27 TCGA-EE-A3AE-06 15 45270689 45270689 T G C15orf43 Missense_Mutation p.Y176D 0.27 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AE-06 15 45467505 45467505 G A SHF Silent p.S188S 0.60 TCGA-EE-A3AE-06 15 45554238 45554238 G A SLC28A2 Missense_Mutation p.A66T 0.38 tolerated(0.19) benign(0.043) TCGA-EE-A3AE-06 15 48539651 48539651 C T SLC12A1 Missense_Mutation p.L560F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 15 50596163 50596163 C T GABPB1 Silent p.K92K 0.15 TCGA-EE-A3AE-06 15 51780227 51780227 G A DMXL2 Missense_Mutation p.S1714F 0.62 deleterious(0) possibly_damaging(0.843) TCGA-EE-A3AE-06 15 52498066 52498066 C T MYO5C Missense_Mutation p.R1495Q 0.49 tolerated(1) benign(0.01) TCGA-EE-A3AE-06 15 53907812 53907812 G A WDR72 Missense_Mutation p.S864F 0.17 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AE-06 15 54435820 54435820 C T UNC13C Nonsense_Mutation p.R1004* 0.54 TCGA-EE-A3AE-06 15 54817794 54817794 C T UNC13C Silent p.L1835L 0.21 TCGA-EE-A3AE-06 15 56923887 56923887 G A ZNF280D Missense_Mutation p.H917Y 0.16 deleterious(0) possibly_damaging(0.513) TCGA-EE-A3AE-06 15 58465384 58465384 C T AQP9 Missense_Mutation p.T119I 0.18 tolerated(0.86) benign(0.012) TCGA-EE-A3AE-06 15 58840751 58840751 G A LIPC Missense_Mutation p.R344Q 0.68 tolerated(0.07) benign(0.379) TCGA-EE-A3AE-06 15 59383267 59383267 C T RNF111 Missense_Mutation p.H894Y 0.58 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A3AE-06 15 65489678 65489678 C T CILP Silent p.G982G 0.69 TCGA-EE-A3AE-06 15 65621140 65621140 T C IGDCC3 3'UTR 0.63 TCGA-EE-A3AE-06 15 65897475 65897475 G A VWA9 Missense_Mutation p.P51S 0.24 tolerated(0.21) benign(0.168) TCGA-EE-A3AE-06 15 72954765 72954765 G A GOLGA6B Silent p.Q340Q 0.49 TCGA-EE-A3AE-06 15 74627439 74627439 C T CCDC33 Intron 0.69 TCGA-EE-A3AE-06 15 74659855 74659855 C T CYP11A1 Silent p.R24R 0.56 TCGA-EE-A3AE-06 15 77425613 77425613 G A PEAK1 Missense_Mutation p.P1271S 0.57 tolerated(0.05) benign(0.13) TCGA-EE-A3AE-06 15 78633401 78633401 G A CRABP1 Silent p.L29L 0.60 TCGA-EE-A3AE-06 15 78882512 78882512 C T CHRNA5 Missense_Mutation p.P260L 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 15 80869278 80869278 C T ARNT2 Missense_Mutation p.P529S 0.73 tolerated_low_confidence(0.17) benign(0.134) TCGA-EE-A3AE-06 15 81592267 81592267 C T IL16 Missense_Mutation p.S867F 0.09 deleterious(0) possibly_damaging(0.853) TCGA-EE-A3AE-06 15 83826765 83826765 G A HDGFRP3 Missense_Mutation p.P64S 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AE-06 15 83932634 83932634 G A BNC1 Missense_Mutation p.P457S 0.72 tolerated(0.82) benign(0.002) TCGA-EE-A3AE-06 15 83933219 83933219 C T BNC1 Missense_Mutation p.E262K 0.16 tolerated(0.3) benign(0.403) TCGA-EE-A3AE-06 15 85402498 85402498 G A ALPK3 Missense_Mutation p.R1483Q 0.65 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A3AE-06 15 85486726 85486726 C T SLC28A1 Silent p.F544F 0.20 TCGA-EE-A3AE-06 15 86125290 86125290 G A AKAP13 Missense_Mutation p.E1331K 0.18 tolerated_low_confidence(0.11) benign(0.009) TCGA-EE-A3AE-06 15 90167874 90167874 C T TICRR Missense_Mutation p.L1445F 0.65 tolerated(1) benign(0.003) TCGA-EE-A3AE-06 15 90766867 90766867 C T SEMA4B Missense_Mutation p.P313L 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AE-06 15 91017136 91017136 C T IQGAP1 Silent p.S814S 0.65 TCGA-EE-A3AE-06 15 94945194 94945194 C T MCTP2 Silent p.F677F 0.52 TCGA-EE-A3AE-06 15 97328297 97328297 C T SPATA8 Nonsense_Mutation p.Q90* 0.19 TCGA-EE-A3AE-06 16 10032373 10032373 G A GRIN2A Silent p.S150S 0.49 TCGA-EE-A3AE-06 16 10788190 10788190 T A TEKT5 Missense_Mutation p.N181Y 0.43 deleterious(0.03) benign(0.393) TCGA-EE-A3AE-06 16 16225793 16225793 G A ABCC1 Splice_Site p.X1322_splice 0.20 TCGA-EE-A3AE-06 16 19032952 19032952 G A TMC7 Silent p.G154G 0.59 TCGA-EE-A3AE-06 16 19051673 19051673 C T TMC7 Silent p.I414I 0.57 TCGA-EE-A3AE-06 16 19195419 19195419 G A SYT17 Missense_Mutation p.D301N 0.33 tolerated(0.2) benign(0.055) TCGA-EE-A3AE-06 16 19471576 19471576 C T TMC5 Silent p.S356S 0.16 TCGA-EE-A3AE-06 16 2004098 2004098 G A RPL3L Missense_Mutation p.H19Y 0.43 deleterious(0) benign(0.002) TCGA-EE-A3AE-06 16 20043083 20043083 C T GPR139 Missense_Mutation p.G346R 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AE-06 16 20476978 20476978 G A ACSM2A Missense_Mutation p.G106E 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 16 2086823 2086823 C A SLC9A3R2 Missense_Mutation p.P230H 0.49 tolerated(0.06) possibly_damaging(0.895) TCGA-EE-A3AE-06 16 20974997 20974997 C T DNAH3 Silent p.L3403L 0.38 TCGA-EE-A3AE-06 16 20976069 20976069 C T DNAH3 Missense_Mutation p.G3046E 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 16 2160599 2160599 G A PKD1 Silent p.F1523F 0.30 TCGA-EE-A3AE-06 16 23117550 23117550 G A USP31 Missense_Mutation p.P313S 0.32 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 16 2369609 2369609 G A ABCA3 Silent p.V282V 0.39 TCGA-EE-A3AE-06 16 25239795 25239795 C T AQP8 Silent p.L256L 0.59 TCGA-EE-A3AE-06 16 25251129 25251129 G A ZKSCAN2 3'UTR 0.56 TCGA-EE-A3AE-06 16 25264281 25264281 G A ZKSCAN2 Missense_Mutation p.P222S 0.17 tolerated(0.19) benign(0.004) TCGA-EE-A3AE-06 16 27487825 27487825 G A GTF3C1 Nonsense_Mutation p.Q1434* 0.41 TCGA-EE-A3AE-06 16 28331720 28331720 C T SBK1 Silent p.F251F 0.38 TCGA-EE-A3AE-06 16 28509295 28509295 G A APOBR Missense_Mutation p.G978D 0.47 tolerated(1) benign(0.001) TCGA-EE-A3AE-06 16 28618135 28618135 C T SULT1A1 Missense_Mutation p.E181K 0.17 tolerated(0.24) benign(0.075) TCGA-EE-A3AE-06 16 28916731 28916731 G A RABEP2 Missense_Mutation p.S532F 0.71 deleterious(0) possibly_damaging(0.902) TCGA-EE-A3AE-06 16 29841919 29841919 C T MVP Missense_Mutation p.H17Y 0.40 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AE-06 16 3065693 3065693 C T CLDN6 Silent p.E110E 0.31 TCGA-EE-A3AE-06 16 30727693 30727693 C T SRCAP Missense_Mutation p.P904S 0.31 unknown(0) TCGA-EE-A3AE-06 16 30750429 30750429 C T SRCAP Missense_Mutation p.P3023L 0.51 unknown(0) TCGA-EE-A3AE-06 16 30977223 30977223 G C SETD1A Missense_Mutation p.G674A 0.27 probably_damaging(0.91) TCGA-EE-A3AE-06 16 30977225 30977225 G A SETD1A Missense_Mutation p.G675R 0.27 probably_damaging(0.979) TCGA-EE-A3AE-06 16 31151832 31151832 C T PRSS36 Nonsense_Mutation p.W716* 0.24 TCGA-EE-A3AE-06 16 32891865 32891865 C T SLC6A10P RNA 0.38 TCGA-EE-A3AE-06 16 3487247 3487247 C T ZNF597 Missense_Mutation p.G151E 0.31 tolerated(1) benign(0) TCGA-EE-A3AE-06 16 4790201 4790201 G A C16orf71 Silent p.Q108Q 0.32 TCGA-EE-A3AE-06 16 4927460 4927460 C T UBN1 Missense_Mutation p.P1114S 0.30 tolerated(0.13) possibly_damaging(0.894) TCGA-EE-A3AE-06 16 50118190 50118190 C T HEATR3 Silent p.L426L 0.84 TCGA-EE-A3AE-06 16 53496484 53496484 C T RBL2 Missense_Mutation p.R493C 0.77 tolerated(0.06) benign(0.022) TCGA-EE-A3AE-06 16 57272875 57272875 T C RSPRY1 Silent p.S573S 0.80 TCGA-EE-A3AE-06 16 67865711 67865711 G A CENPT Silent p.L157L 0.52 TCGA-EE-A3AE-06 16 68055780 68055780 G A DDX28 Silent p.S442S 0.67 TCGA-EE-A3AE-06 16 70928360 70928360 G A HYDIN Silent p.I3080I 0.29 TCGA-EE-A3AE-06 16 71218876 71218876 G A HYDIN Silent p.F51F 0.72 TCGA-EE-A3AE-06 16 71318296 71318296 A T CMTR2 Missense_Mutation p.F510I 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 16 71418266 71418266 C T CALB2 Silent p.F186F 0.50 TCGA-EE-A3AE-06 16 77769830 77769830 C T NUDT7 Missense_Mutation p.L99F 0.69 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AE-06 16 77859317 77859317 G A VAT1L Missense_Mutation p.E180K 0.88 tolerated(0.2) benign(0.012) TCGA-EE-A3AE-06 16 89187307 89187307 G A ACSF3 Missense_Mutation p.E409K 0.68 tolerated(0.1) benign(0.15) TCGA-EE-A3AE-06 17 10297626 10297626 C T MYH8 Silent p.R1702R 0.84 TCGA-EE-A3AE-06 17 10356210 10356210 C T MYH4 Missense_Mutation p.D1051N 0.79 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A3AE-06 17 10358010 10358010 C T MYH4 Silent p.K851K 0.71 TCGA-EE-A3AE-06 17 11597718 11597718 C T DNAH9 Missense_Mutation p.S1609F 0.79 probably_damaging(0.981) TCGA-EE-A3AE-06 17 11687708 11687708 G A DNAH9 Missense_Mutation p.G2638E 0.79 benign(0.02) TCGA-EE-A3AE-06 17 11725780 11725780 G A DNAH9 Missense_Mutation p.G2959E 0.78 probably_damaging(0.997) TCGA-EE-A3AE-06 17 11778370 11778370 C T DNAH9 Silent p.S3449S 0.55 TCGA-EE-A3AE-06 17 11778373 11778373 G A DNAH9 Silent p.V3450V 0.51 TCGA-EE-A3AE-06 17 16527671 16527671 T G ZNF624 Silent p.R177R 0.84 TCGA-EE-A3AE-06 17 19684407 19684407 G T ULK2 Missense_Mutation p.Q884K 0.70 deleterious(0.03) benign(0.012) TCGA-EE-A3AE-06 17 21318627 21318627 G A KCNJ12 5'UTR 0.17 TCGA-EE-A3AE-06 17 21318795 21318795 C T KCNJ12 Silent p.V47V 0.22 TCGA-EE-A3AE-06 17 21318927 21318927 C T KCNJ12 Silent p.F91F 0.32 TCGA-EE-A3AE-06 17 25974437 25974437 C T LGALS9 Silent p.F300F 0.98 TCGA-EE-A3AE-06 17 26687783 26687783 C T TMEM199 Silent p.I148I 0.89 TCGA-EE-A3AE-06 17 26817514 26817514 G A SLC13A2 Missense_Mutation p.G141R 0.87 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 17 26887181 26887181 G A PIGS Silent p.N235N 0.92 TCGA-EE-A3AE-06 17 29560024 29560034 AGGTTACCACA - NF1 Frame_Shift_Del p.Y1169Sfs*22 0.84 TCGA-EE-A3AE-06 17 3119596 3119596 C T OR1A1 Missense_Mutation p.P228S 0.74 tolerated(0.06) possibly_damaging(0.654) TCGA-EE-A3AE-06 17 33310059 33310059 C T LIG3 Missense_Mutation p.T12I 0.84 tolerated_low_confidence(0.08) benign(0.001) TCGA-EE-A3AE-06 17 35993378 35993378 T C DDX52 Silent p.K119K 0.91 TCGA-EE-A3AE-06 17 36047183 36047183 G A HNF1B 3'UTR 0.85 TCGA-EE-A3AE-06 17 36943146 36943146 G A PIP4K2B Missense_Mutation p.P63S 0.86 deleterious(0) possibly_damaging(0.659) TCGA-EE-A3AE-06 17 37819238 37819238 C T STARD3 3'UTR 0.95 TCGA-EE-A3AE-06 17 37922397 37922397 G A IKZF3 Silent p.N392N 0.83 TCGA-EE-A3AE-06 17 38121985 38121985 A G GSDMA Silent p.L15L 0.84 TCGA-EE-A3AE-06 17 38209599 38209599 G T MED24 Silent p.S55S 0.88 TCGA-EE-A3AE-06 17 38296641 38296641 A C CASC3 5'UTR 0.50 TCGA-EE-A3AE-06 17 38645137 38645137 G A TNS4 Missense_Mutation p.P175L 0.90 tolerated(1) benign(0.025) TCGA-EE-A3AE-06 17 39775744 39775744 G A KRT17 3'UTR 0.81 TCGA-EE-A3AE-06 17 40265637 40265637 C T KAT2A 3'UTR 0.88 TCGA-EE-A3AE-06 17 40282432 40282432 G A RAB5C Missense_Mutation p.S63F 0.89 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AE-06 17 40821485 40821485 C T PLEKHH3 Missense_Mutation p.R723K 0.86 tolerated(0.64) benign(0.031) TCGA-EE-A3AE-06 17 41019673 41019673 C T AOC4P RNA 0.88 TCGA-EE-A3AE-06 17 41174026 41174026 G A VAT1 Missense_Mutation p.P105L 0.96 deleterious(0.03) benign(0.155) TCGA-EE-A3AE-06 17 41901338 41901338 G A MPP3 Silent p.I215I 0.89 TCGA-EE-A3AE-06 17 42092376 42092376 G T TMEM101 5'UTR 0.65 TCGA-EE-A3AE-06 17 42759460 42759460 G A CCDC43 Silent p.I113I 0.90 TCGA-EE-A3AE-06 17 4577955 4577955 G A PELP1 Missense_Mutation p.P478S 0.76 possibly_damaging(0.718) TCGA-EE-A3AE-06 17 4578163 4578163 C T PELP1 Missense_Mutation p.G455R 0.86 probably_damaging(0.947) TCGA-EE-A3AE-06 17 48626509 48626509 G T SPATA20 Missense_Mutation p.V208F 0.85 deleterious(0.04) benign(0.188) TCGA-EE-A3AE-06 17 48626511 48626511 C T SPATA20 Silent p.V208V 0.86 TCGA-EE-A3AE-06 17 48678508 48678508 G A CACNA1G Silent p.E1296E 0.88 TCGA-EE-A3AE-06 17 4926845 4926845 C T KIF1C Missense_Mutation p.P904L 0.36 tolerated_low_confidence(0.12) benign(0.003) TCGA-EE-A3AE-06 17 53063527 53063527 C T STXBP4 5'UTR 0.85 TCGA-EE-A3AE-06 17 5461922 5461922 C T NLRP1 Silent p.R698R 0.78 TCGA-EE-A3AE-06 17 56232809 56232809 G A OR4D1 Missense_Mutation p.A99T 0.88 tolerated(0.8) benign(0.007) TCGA-EE-A3AE-06 17 57287389 57287389 G A SMG8 5'UTR 0.94 TCGA-EE-A3AE-06 17 57682846 57682846 C T DHX40 Missense_Mutation p.H671Y 0.68 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A3AE-06 17 60062045 60062045 C T MED13 Silent p.E886E 0.86 TCGA-EE-A3AE-06 17 62049958 62049958 C T SCN4A Missense_Mutation p.D82N 0.89 deleterious(0) benign(0.153) TCGA-EE-A3AE-06 17 6482972 6482972 G A KIAA0753 3'UTR 0.69 TCGA-EE-A3AE-06 17 6683216 6683216 C T FBXO39 Missense_Mutation p.P10L 0.75 tolerated_low_confidence(0.35) benign(0.002) TCGA-EE-A3AE-06 17 66915539 66915539 G A ABCA8 Missense_Mutation p.P564L 0.89 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 17 67075194 67075194 C T ABCA6 Missense_Mutation p.E1592K 0.84 tolerated(0.05) benign(0.403) TCGA-EE-A3AE-06 17 6945875 6945875 G C SLC16A11 Missense_Mutation p.P209R 0.90 deleterious(0.02) possibly_damaging(0.895) TCGA-EE-A3AE-06 17 7106564 7106564 C T DLG4 Missense_Mutation p.G240E 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AE-06 17 71382048 71382048 C T SDK2 Missense_Mutation p.E1503K 0.81 tolerated(0.12) benign(0.044) TCGA-EE-A3AE-06 17 72588211 72588211 C T C17orf77 Missense_Mutation p.S9F 0.33 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A3AE-06 17 73487804 73487804 C T KIAA0195 Silent p.S473S 0.31 TCGA-EE-A3AE-06 17 73658888 73658888 G A RECQL5 Missense_Mutation p.R148C 0.30 deleterious(0) probably_damaging(0.949) TCGA-EE-A3AE-06 17 73739891 73739891 G A ITGB4 Silent p.G1020G 0.37 TCGA-EE-A3AE-06 17 74274117 74274117 G A QRICH2 Silent p.I1524I 0.53 TCGA-EE-A3AE-06 17 7468318 7468318 C T SENP3 Missense_Mutation p.P333L 0.76 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A3AE-06 17 75210098 75210098 C T SEC14L1 Missense_Mutation p.S714F 0.34 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A3AE-06 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.74 TCGA-EE-A3AE-06 17 76115085 76115085 G A TMC6 Silent p.I618I 0.24 TCGA-EE-A3AE-06 17 76548882 76548882 C T DNAH17 Silent p.K728K 0.57 TCGA-EE-A3AE-06 17 7657743 7657743 C T DNAH2 Intron 0.50 TCGA-EE-A3AE-06 17 77079573 77079573 C T ENGASE Silent p.G384G 0.52 TCGA-EE-A3AE-06 17 77915871 77915871 G A TBC1D16 Silent p.L681L 0.33 TCGA-EE-A3AE-06 17 78449913 78449913 C T NPTX1 Missense_Mutation p.G112S 0.66 tolerated(0.08) possibly_damaging(0.656) TCGA-EE-A3AE-06 17 79095360 79095360 G A AATK Silent p.P792P 0.39 TCGA-EE-A3AE-06 17 79495898 79495898 C T FSCN2 Missense_Mutation p.T114I 0.56 deleterious(0.02) benign(0.008) TCGA-EE-A3AE-06 17 79892616 79892616 G A PYCR1 Silent p.F182F 0.73 TCGA-EE-A3AE-06 17 79914536 79914536 C T NOTUM Silent p.P326P 0.29 TCGA-EE-A3AE-06 17 8051348 8051348 C T PER1 Missense_Mutation p.D401N 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 17 8051349 8051349 C T PER1 Silent p.E400E 0.86 TCGA-EE-A3AE-06 17 8397081 8397081 C T MYH10 Silent p.L1393L 0.82 TCGA-EE-A3AE-06 18 14542822 14542822 G A POTEC Silent p.C108C 0.13 TCGA-EE-A3AE-06 18 18629177 18629177 G A ROCK1 Missense_Mutation p.S97F 0.72 tolerated(0.18) benign(0.013) TCGA-EE-A3AE-06 18 28669479 28669479 A G DSC2 Silent p.L185L 0.60 TCGA-EE-A3AE-06 18 28722066 28722066 G A DSC1 Missense_Mutation p.P386S 0.73 tolerated(0.2) possibly_damaging(0.866) TCGA-EE-A3AE-06 18 2892118 2892118 C T EMILIN2 Missense_Mutation p.H665Y 0.71 tolerated(0.1) benign(0.002) TCGA-EE-A3AE-06 18 28923487 28923487 G A DSG1 Missense_Mutation p.E588K 0.77 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A3AE-06 18 28923508 28923508 C T DSG1 Missense_Mutation p.H595Y 0.74 deleterious(0) possibly_damaging(0.826) TCGA-EE-A3AE-06 18 28968867 28968867 G A DSG4 Missense_Mutation p.E135K 0.83 tolerated(0.54) possibly_damaging(0.491) TCGA-EE-A3AE-06 18 28992947 28992947 C T DSG4 Missense_Mutation p.P857S 0.68 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AE-06 18 31326326 31326326 G A ASXL3 Missense_Mutation p.E2172K 0.67 probably_damaging(0.996) TCGA-EE-A3AE-06 18 44579378 44579378 C T KATNAL2 Nonsense_Mutation p.Q12* 0.74 TCGA-EE-A3AE-06 18 46860172 46860172 G A DYM Silent p.F182F 0.64 TCGA-EE-A3AE-06 18 50866094 50866094 C T DCC Missense_Mutation p.P726S 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 18 50866129 50866129 G A DCC Silent p.Q737Q 0.90 TCGA-EE-A3AE-06 18 61328465 61328465 G A SERPINB3 5'UTR 0.48 TCGA-EE-A3AE-06 18 61654154 61654154 C T SERPINB8 Missense_Mutation p.S256L 0.76 tolerated(0.12) benign(0) TCGA-EE-A3AE-06 18 63547653 63547653 C T CDH7 Silent p.I627I 0.65 TCGA-EE-A3AE-06 18 66364482 66364482 G A TMX3 Missense_Mutation p.S184L 0.83 deleterious(0.04) benign(0.012) TCGA-EE-A3AE-06 18 6971974 6971974 G A LAMA1 Missense_Mutation p.P2261S 0.75 tolerated(0.22) benign(0.086) TCGA-EE-A3AE-06 18 70532132 70532132 C T NETO1 Nonsense_Mutation p.W44* 0.50 TCGA-EE-A3AE-06 18 72344766 72344766 C T ZNF407 Silent p.S597S 0.72 TCGA-EE-A3AE-06 18 73000553 73000553 C T TSHZ1 Missense_Mutation p.P1019L 0.51 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AE-06 19 10114320 10114320 C T COL5A3 Missense_Mutation p.R257Q 0.25 unknown(0) TCGA-EE-A3AE-06 19 10114809 10114809 C T COL5A3 Missense_Mutation p.E203K 0.23 unknown(0) TCGA-EE-A3AE-06 19 10124205 10124205 C T RDH8 Missense_Mutation p.S31F 0.39 deleterious(0) probably_damaging(0.956) TCGA-EE-A3AE-06 19 11216251 11216251 G A LDLR Silent p.K223K 0.34 TCGA-EE-A3AE-06 19 11319778 11319778 T C DOCK6 Missense_Mutation p.I1585V 0.63 tolerated(0.08) benign(0.42) TCGA-EE-A3AE-06 19 12154888 12154888 C T ZNF878 Missense_Mutation p.R443K 0.12 tolerated(0.07) benign(0.036) TCGA-EE-A3AE-06 19 1231200 1231200 G A C19orf26 Missense_Mutation p.P352S 0.59 tolerated(0.34) probably_damaging(0.977) TCGA-EE-A3AE-06 19 12740041 12740041 C T ZNF791 Silent p.S566S 0.65 TCGA-EE-A3AE-06 19 12878642 12878642 A G HOOK2 Silent p.L431L 0.19 TCGA-EE-A3AE-06 19 12962929 12962929 G A MAST1 Missense_Mutation p.E293K 0.12 deleterious(0.01) possibly_damaging(0.779) TCGA-EE-A3AE-06 19 13084240 13084240 G A DAND5 Missense_Mutation p.R121Q 0.14 tolerated(0.37) benign(0.028) TCGA-EE-A3AE-06 19 13988108 13988108 C T NANOS3 Silent p.L16L 0.60 TCGA-EE-A3AE-06 19 1398863 1398863 C T GAMT Missense_Mutation p.G208R 0.46 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A3AE-06 19 14048660 14048660 C T PODNL1 Missense_Mutation p.G62S 0.64 deleterious(0.01) benign(0.001) TCGA-EE-A3AE-06 19 14104668 14104668 G A RFX1 5'UTR 0.58 TCGA-EE-A3AE-06 19 1466440 1466440 C T APC2 Missense_Mutation p.P1047L 0.57 benign(0.055) TCGA-EE-A3AE-06 19 14752428 14752428 C T EMR3 Missense_Mutation p.E351K 0.61 tolerated(0.22) benign(0.011) TCGA-EE-A3AE-06 19 15198767 15198767 G A OR1I1 Missense_Mutation p.M297I 0.48 tolerated(0.38) benign(0.003) TCGA-EE-A3AE-06 19 15739113 15739113 G A CYP4F8 Intron 0.19 TCGA-EE-A3AE-06 19 15852753 15852753 C T OR10H3 Missense_Mutation p.S184F 0.23 deleterious(0) possibly_damaging(0.492) TCGA-EE-A3AE-06 19 16614027 16614027 C T C19orf44 Missense_Mutation p.S304F 0.18 deleterious(0.04) benign(0.077) TCGA-EE-A3AE-06 19 16875863 16875863 C T NWD1 Missense_Mutation p.S757F 0.11 tolerated(0.38) benign(0.124) TCGA-EE-A3AE-06 19 16957920 16957920 C T SIN3B Missense_Mutation p.S241F 0.17 deleterious(0) benign(0.27) TCGA-EE-A3AE-06 19 17003765 17003765 G A CPAMD8 3'UTR 0.24 TCGA-EE-A3AE-06 19 17450003 17450003 C T GTPBP3 Missense_Mutation p.L278F 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 17487999 17487999 G A PLVAP Silent p.S33S 0.23 TCGA-EE-A3AE-06 19 17741523 17741523 C T UNC13A Silent p.E1155E 0.70 TCGA-EE-A3AE-06 19 17983279 17983279 G A SLC5A5 Missense_Mutation p.G51S 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 19 19735051 19735051 G A LPAR2 3'UTR 0.25 TCGA-EE-A3AE-06 19 21240360 21240360 C T ZNF430 Missense_Mutation p.L416F 0.32 deleterious(0.03) possibly_damaging(0.869) TCGA-EE-A3AE-06 19 22270835 22270835 T A ZNF257 Missense_Mutation p.F95I 0.48 deleterious(0) benign(0.023) TCGA-EE-A3AE-06 19 22272020 22272020 G A ZNF257 Missense_Mutation p.E490K 0.16 tolerated(0.12) benign(0.047) TCGA-EE-A3AE-06 19 23170170 23170170 G A ZNF728 Silent p.L56L 0.40 TCGA-EE-A3AE-06 19 23542334 23542334 A G ZNF91 Silent p.L1149L 0.14 TCGA-EE-A3AE-06 19 23927132 23927132 G A ZNF681 Missense_Mutation p.S407L 0.34 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A3AE-06 19 23938330 23938330 C T ZNF681 Silent p.V9V 0.16 TCGA-EE-A3AE-06 19 2877858 2877858 C T ZNF556 Missense_Mutation p.S301F 0.27 deleterious(0.04) probably_damaging(0.961) TCGA-EE-A3AE-06 19 31040070 31040070 G A ZNF536 Missense_Mutation p.D1182N 0.57 deleterious_low_confidence(0.03) benign(0.388) TCGA-EE-A3AE-06 19 3121120 3121120 C T GNA11 Silent p.F341F 0.31 TCGA-EE-A3AE-06 19 31767491 31767491 C T TSHZ3 Missense_Mutation p.D1070N 0.27 tolerated(0.19) probably_damaging(0.998) TCGA-EE-A3AE-06 19 33482762 33482762 C T RHPN2 Silent p.Q537Q 0.53 TCGA-EE-A3AE-06 19 33587270 33587270 T C GPATCH1 Missense_Mutation p.L257P 0.24 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AE-06 19 3381876 3381876 C T NFIC Missense_Mutation p.P66L 0.54 tolerated(0.07) benign(0.05) TCGA-EE-A3AE-06 19 34263626 34263626 C T CHST8 Silent p.F311F 0.49 TCGA-EE-A3AE-06 19 35551548 35551548 C T HPN Missense_Mutation p.S213F 0.12 deleterious(0.04) benign(0.136) TCGA-EE-A3AE-06 19 3578055 3578055 C T HMG20B Silent p.P295P 0.78 TCGA-EE-A3AE-06 19 36206144 36206144 G A ZBTB32 Missense_Mutation p.D206N 0.21 tolerated_low_confidence(0.21) possibly_damaging(0.539) TCGA-EE-A3AE-06 19 36233401 36233401 G A U2AF1L4 3'Flank 0.22 TCGA-EE-A3AE-06 19 36279316 36279316 C T ARHGAP33 Silent p.T1122T 0.70 TCGA-EE-A3AE-06 19 36321760 36321760 C T NPHS1 Missense_Mutation p.D1194N 0.64 tolerated(0.11) benign(0.167) TCGA-EE-A3AE-06 19 36322271 36322271 G A NPHS1 Missense_Mutation p.S1105L 0.63 deleterious(0) benign(0.003) TCGA-EE-A3AE-06 19 36334409 36334409 G A NPHS1 Missense_Mutation p.P767S 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 19 36370350 36370350 C T APLP1 3'UTR 0.57 TCGA-EE-A3AE-06 19 3644155 3644155 G A PIP5K1C Silent p.I480I 0.15 TCGA-EE-A3AE-06 19 37101549 37101549 C T ZNF382 Intron 0.48 TCGA-EE-A3AE-06 19 37677313 37677313 G A ZNF585B Missense_Mutation p.H376Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 19 38056630 38056630 G A ZNF571 Missense_Mutation p.R234C 0.11 tolerated(0.09) probably_damaging(0.979) TCGA-EE-A3AE-06 19 38573504 38573504 G A SIPA1L3 Silent p.E433E 0.17 TCGA-EE-A3AE-06 19 38899556 38899556 C T FAM98C 3'UTR 0.18 TCGA-EE-A3AE-06 19 38904084 38904084 C T RASGRP4 Missense_Mutation p.E421K 0.67 deleterious(0.01) benign(0.081) TCGA-EE-A3AE-06 19 3910882 3910882 C T ATCAY Silent p.F287F 0.21 TCGA-EE-A3AE-06 19 39234887 39234887 C T CAPN12 5'UTR 0.19 TCGA-EE-A3AE-06 19 39597622 39597622 C T PAPL Silent p.F383F 0.65 TCGA-EE-A3AE-06 19 39971592 39971592 C T TIMM50 Silent p.A136A 0.56 TCGA-EE-A3AE-06 19 40384138 40384138 C T FCGBP Missense_Mutation p.E3158K 0.11 possibly_damaging(0.621) TCGA-EE-A3AE-06 19 40541451 40541451 G A ZNF780B Missense_Mutation p.H439Y 0.60 deleterious(0.01) possibly_damaging(0.684) TCGA-EE-A3AE-06 19 40883978 40883978 G A PLD3 Silent p.R457R 0.64 TCGA-EE-A3AE-06 19 4168438 4168438 G A CREB3L3 Missense_Mutation p.D269N 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AE-06 19 41704456 41704456 G A CYP2S1 Missense_Mutation p.D195N 0.16 deleterious(0.05) benign(0.302) TCGA-EE-A3AE-06 19 41928178 41928178 C T BCKDHA Silent p.F252F 0.48 TCGA-EE-A3AE-06 19 42125569 42125569 C T CEACAM4 3'UTR 0.77 TCGA-EE-A3AE-06 19 42218946 42218946 G A CEACAM5 Missense_Mutation p.D161N 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A3AE-06 19 42223949 42223949 C T CEACAM5 Silent p.T531T 0.18 TCGA-EE-A3AE-06 19 43358111 43358111 G A PSG10P RNA 0.59 TCGA-EE-A3AE-06 19 43359717 43359717 G A PSG10P RNA 0.13 TCGA-EE-A3AE-06 19 43372119 43372119 C T PSG1 3'UTR 0.19 TCGA-EE-A3AE-06 19 43372121 43372121 G A PSG1 3'UTR 0.65 TCGA-EE-A3AE-06 19 43439621 43439621 A G PSG7 Missense_Mutation p.L122S 0.22 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 19 43576027 43576027 C T PSG2 Silent p.A263A 0.34 TCGA-EE-A3AE-06 19 4364151 4364151 G A SH3GL1 Silent p.I133I 0.55 TCGA-EE-A3AE-06 19 43683205 43683205 G A PSG5 Intron 0.23 TCGA-EE-A3AE-06 19 44127394 44127394 C T CADM4 3'UTR 0.23 TCGA-EE-A3AE-06 19 44223817 44223817 G A IRGC Silent p.G369G 0.58 TCGA-EE-A3AE-06 19 44605286 44605286 G A ZNF224 Missense_Mutation p.G48E 0.55 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A3AE-06 19 44681046 44681046 C T ZNF226 Missense_Mutation p.S544L 0.19 tolerated(0.06) probably_damaging(0.963) TCGA-EE-A3AE-06 19 44933871 44933871 G A ZNF229 Missense_Mutation p.S362L 0.57 tolerated(0.09) benign(0.007) TCGA-EE-A3AE-06 19 44934632 44934632 G A ZNF229 Silent p.I108I 0.24 TCGA-EE-A3AE-06 19 45028097 45028097 C T CEACAM20 RNA 0.19 TCGA-EE-A3AE-06 19 4523732 4523732 G A PLIN5 Silent p.I400I 0.53 TCGA-EE-A3AE-06 19 45321793 45321793 G A BCAM Missense_Mutation p.E365K 0.21 tolerated(0.3) benign(0.081) TCGA-EE-A3AE-06 19 45559751 45559751 G T CLASRP Missense_Mutation p.L141F 0.20 tolerated(0.37) benign(0.246) TCGA-EE-A3AE-06 19 45895188 45895188 G A PPP1R13L Missense_Mutation p.P589S 0.32 tolerated(0.05) possibly_damaging(0.641) TCGA-EE-A3AE-06 19 46032360 46032360 C T OPA3 Missense_Mutation p.R166Q 0.40 tolerated(0.56) benign(0.002) TCGA-EE-A3AE-06 19 46287971 46287971 G A AC011530.4 Silent p.F41F 0.21 TCGA-EE-A3AE-06 19 46318911 46318911 G A SYMPK Silent p.P1244P 0.24 TCGA-EE-A3AE-06 19 47124448 47124448 C T PTGIR 3'UTR 0.64 TCGA-EE-A3AE-06 19 47844691 47844691 C T C5AR2 Missense_Mutation p.P212L 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 4817010 4817010 G A TICAM1 Silent p.F460F 0.23 TCGA-EE-A3AE-06 19 49107059 49107059 G A FAM83E Missense_Mutation p.P290S 0.61 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A3AE-06 19 50214099 50214099 G A CPT1C Silent p.E617E 0.16 TCGA-EE-A3AE-06 19 50251672 50251672 C T TSKS Missense_Mutation p.E152K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AE-06 19 50411880 50411880 G A NUP62 Silent p.F395F 0.21 TCGA-EE-A3AE-06 19 51170824 51170824 C T SHANK1 Missense_Mutation p.E1465K 0.35 unknown(0) TCGA-EE-A3AE-06 19 51447000 51447000 C T KLK5 Missense_Mutation p.G257R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 51480889 51480889 C T KLK7 Missense_Mutation p.G222E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 51559798 51559798 G A KLK13 3'UTR 0.24 TCGA-EE-A3AE-06 19 51647725 51647725 C T SIGLEC7 Silent p.L166L 0.57 TCGA-EE-A3AE-06 19 51770654 51770654 G A SIGLECL1 Silent p.A146A 0.20 TCGA-EE-A3AE-06 19 51771841 51771841 G A SIGLECL1 Missense_Mutation p.R195Q 0.53 tolerated_low_confidence(0.24) benign(0.005) TCGA-EE-A3AE-06 19 51919975 51919975 C T SIGLEC10 Silent p.V217V 0.47 TCGA-EE-A3AE-06 19 52824895 52824895 C T ZNF480 Missense_Mutation p.S131F 0.28 deleterious(0.01) possibly_damaging(0.656) TCGA-EE-A3AE-06 19 53209718 53209718 G A ZNF611 Missense_Mutation p.S197F 0.20 tolerated(0.74) probably_damaging(0.991) TCGA-EE-A3AE-06 19 53345199 53345199 G A ZNF468 Silent p.I116I 0.17 TCGA-EE-A3AE-06 19 53352344 53352344 G A ZNF468 Silent p.S46S 0.67 TCGA-EE-A3AE-06 19 53884868 53884868 C T ZNF525 Missense_Mutation p.R346C 0.50 deleterious(0) possibly_damaging(0.653) TCGA-EE-A3AE-06 19 54204530 54204530 C T MIR520B RNA 0.69 TCGA-EE-A3AE-06 19 54410031 54410031 G T PRKCG Missense_Mutation p.R659L 0.24 tolerated(0.08) benign(0.004) TCGA-EE-A3AE-06 19 54783395 54783395 G A LILRB2 Silent p.L155L 0.14 TCGA-EE-A3AE-06 19 54875923 54875923 G T LAIR1 Missense_Mutation p.Q17K 0.16 tolerated(0.57) benign(0.051) TCGA-EE-A3AE-06 19 54876492 54876492 G A LAIR1 5'UTR 0.55 TCGA-EE-A3AE-06 19 55045107 55045107 C T KIR3DX1 Missense_Mutation p.S76F 0.55 tolerated(0.76) benign(0.057) TCGA-EE-A3AE-06 19 55174373 55174373 C T LILRB4 5'UTR 0.68 TCGA-EE-A3AE-06 19 55176613 55176613 G T LILRB4 Missense_Mutation p.G247W 0.71 tolerated(0.09) possibly_damaging(0.721) TCGA-EE-A3AE-06 19 55325338 55325338 G A KIR2DL4 Silent p.Q267Q 0.78 TCGA-EE-A3AE-06 19 55349217 55349217 C T KIR2DS4 Missense_Mutation p.S86F 0.62 tolerated_low_confidence(0.1) possibly_damaging(0.807) TCGA-EE-A3AE-06 19 55489138 55489138 G A NLRP2 Missense_Mutation p.R115Q 0.58 tolerated(0.58) benign(0.001) TCGA-EE-A3AE-06 19 55494259 55494259 C T NLRP2 Missense_Mutation p.P398L 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 55512279 55512279 C T NLRP2 3'UTR 0.18 TCGA-EE-A3AE-06 19 55526347 55526347 G A GP6 Silent p.I322I 0.57 TCGA-EE-A3AE-06 19 56090040 56090040 G A ZNF579 Silent p.P322P 0.21 TCGA-EE-A3AE-06 19 56369767 56369767 C T NLRP4 Silent p.S336S 0.55 TCGA-EE-A3AE-06 19 56392888 56392888 G A NLRP4 Missense_Mutation p.E974K 0.76 tolerated(0.06) benign(0.083) TCGA-EE-A3AE-06 19 56459592 56459592 G A NLRP8 Missense_Mutation p.M108I 0.62 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AE-06 19 56693615 56693615 G A GALP Missense_Mutation p.A71T 0.23 tolerated(0.06) benign(0.157) TCGA-EE-A3AE-06 19 56701746 56701746 C T ZSCAN5B Missense_Mutation p.G313E 0.43 tolerated(1) probably_damaging(1) TCGA-EE-A3AE-06 19 57286721 57286721 G A ZIM2 Nonsense_Mutation p.Q307* 0.67 TCGA-EE-A3AE-06 19 5766155 5766155 C T CATSPERD Silent p.I516I 0.62 TCGA-EE-A3AE-06 19 5831269 5831269 G A FUT6 3'UTR 0.13 TCGA-EE-A3AE-06 19 58319928 58319928 G A ZNF552 Missense_Mutation p.P235L 0.79 deleterious(0.01) benign(0.421) TCGA-EE-A3AE-06 19 58485840 58485840 G A C19orf18 5'UTR 0.45 TCGA-EE-A3AE-06 19 58578433 58578433 G A ZNF135 Missense_Mutation p.G218E 0.16 tolerated(0.25) benign(0.01) TCGA-EE-A3AE-06 19 603796 603796 C T HCN2 Silent p.F295F 0.15 TCGA-EE-A3AE-06 19 6312166 6312166 C T ACER1 Missense_Mutation p.G115E 0.35 tolerated(0.79) benign(0.003) TCGA-EE-A3AE-06 19 6719374 6719374 C T C3 Missense_Mutation p.E39K 0.61 tolerated(0.08) benign(0.014) TCGA-EE-A3AE-06 19 6848067 6848067 G A VAV1 Missense_Mutation p.G691R 0.65 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 19 7584404 7584404 C T ZNF358 Silent p.F92F 0.22 TCGA-EE-A3AE-06 19 8137016 8137016 G A FBN3 Silent p.L2668L 0.56 TCGA-EE-A3AE-06 19 8668765 8668765 C T ADAMTS10 Missense_Mutation p.G147S 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 19 8808059 8808059 G A ACTL9 Silent p.R331R 0.23 TCGA-EE-A3AE-06 19 9061313 9061313 C T MUC16 Silent p.R8711R 0.67 TCGA-EE-A3AE-06 19 9065080 9065080 C T MUC16 Missense_Mutation p.V7456I 0.62 unknown(0) TCGA-EE-A3AE-06 19 9069690 9069690 G A MUC16 Missense_Mutation p.P5919L 0.22 unknown(0) TCGA-EE-A3AE-06 19 9071467 9071467 G A MUC16 Missense_Mutation p.P5327S 0.10 unknown(0) TCGA-EE-A3AE-06 19 9072472 9072472 C T MUC16 Missense_Mutation p.D4992N 0.51 unknown(0) TCGA-EE-A3AE-06 19 9072844 9072844 C T MUC16 Missense_Mutation p.E4868K 0.57 unknown(0) TCGA-EE-A3AE-06 19 9076384 9076384 G A MUC16 Missense_Mutation p.P3688S 0.19 unknown(0) TCGA-EE-A3AE-06 19 9086722 9086722 C T MUC16 Missense_Mutation p.G1698E 0.51 unknown(0) TCGA-EE-A3AE-06 19 9088812 9088812 G A MUC16 Silent p.F1001F 0.21 TCGA-EE-A3AE-06 19 9088841 9088841 G C MUC16 Missense_Mutation p.L992V 0.24 unknown(0) TCGA-EE-A3AE-06 19 9296778 9296778 T A OR7D2 Missense_Mutation p.F107L 0.65 deleterious_low_confidence(0.02) benign(0.109) TCGA-EE-A3AE-06 19 9324843 9324843 G A OR7D4 Missense_Mutation p.S224F 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3AE-06 19 9578989 9578989 C T ZNF560 Missense_Mutation p.E212K 0.19 tolerated(0.19) possibly_damaging(0.636) TCGA-EE-A3AE-06 19 9585993 9585993 C T ZNF560 5'UTR 0.24 TCGA-EE-A3AE-06 1 10179568 10179568 C T UBE4B Intron 0.56 TCGA-EE-A3AE-06 1 104121965 104121965 C T AMY2B Missense_Mutation p.P460L 0.10 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AE-06 1 104297230 104297230 T G AMY1C Missense_Mutation p.F330V 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 11199426 11199426 G A MTOR Silent p.L1689L 0.58 TCGA-EE-A3AE-06 1 111996918 111996918 C T ATP5F1 Missense_Mutation p.R55C 0.72 deleterious(0.03) benign(0.028) TCGA-EE-A3AE-06 1 117629057 117629057 C T TTF2 Silent p.I691I 0.24 TCGA-EE-A3AE-06 1 118548083 118548083 G A SPAG17 Missense_Mutation p.S1577L 0.70 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AE-06 1 11898651 11898651 C T CLCN6 Silent p.S821S 0.26 TCGA-EE-A3AE-06 1 119427608 119427608 C T TBX15 Missense_Mutation p.G413E 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AE-06 1 12317070 12317070 C T VPS13D Silent p.F289F 0.54 TCGA-EE-A3AE-06 1 12566915 12566915 C A VPS13D Missense_Mutation p.A4268D 0.26 probably_damaging(0.991) TCGA-EE-A3AE-06 1 12835935 12835935 T C PRAMEF12 Silent p.C179C 0.57 TCGA-EE-A3AE-06 1 12853392 12853392 C T PRAMEF1 Missense_Mutation p.P6S 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 1 12854324 12854324 G A PRAMEF1 Missense_Mutation p.S183N 0.43 tolerated(0.1) benign(0.205) TCGA-EE-A3AE-06 1 12856020 12856020 C T PRAMEF1 Missense_Mutation p.R434W 0.16 deleterious(0.03) benign(0.005) TCGA-EE-A3AE-06 1 12888510 12888510 C T PRAMEF11 Missense_Mutation p.S5N 0.50 tolerated(0.31) benign(0.008) TCGA-EE-A3AE-06 1 12919953 12919953 G A PRAMEF2 Missense_Mutation p.M231I 0.44 deleterious(0.01) probably_damaging(0.961) TCGA-EE-A3AE-06 1 12942935 12942935 C T PRAMEF4 Missense_Mutation p.G94E 0.30 tolerated(0.73) benign(0.135) TCGA-EE-A3AE-06 1 142713945 142713945 G A RP11-417J8.6 RNA 0.64 TCGA-EE-A3AE-06 1 144864151 144864151 G A PDE4DIP Nonsense_Mutation p.Q1982* 0.15 TCGA-EE-A3AE-06 1 149880793 149880793 G A SV2A Missense_Mutation p.R444W 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 1 149885219 149885219 G A SV2A Silent p.F58F 0.27 TCGA-EE-A3AE-06 1 152086483 152086483 C T TCHH Missense_Mutation p.G25E 0.59 unknown(0) TCGA-EE-A3AE-06 1 152127734 152127734 C T RPTN Missense_Mutation p.G614E 0.49 tolerated(0.06) benign(0.179) TCGA-EE-A3AE-06 1 152279155 152279155 C T FLG Missense_Mutation p.G2736E 0.12 benign(0.188) TCGA-EE-A3AE-06 1 152284394 152284394 C T FLG Missense_Mutation p.E990K 0.52 possibly_damaging(0.702) TCGA-EE-A3AE-06 1 152382405 152382405 G A CRNN Nonsense_Mutation p.Q385* 0.26 TCGA-EE-A3AE-06 1 152384617 152384617 C T CRNN Silent p.G31G 0.39 TCGA-EE-A3AE-06 1 153362891 153362891 C T S100A8 Missense_Mutation p.E41K 0.53 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AE-06 1 15546025 15546025 C T TMEM51 Missense_Mutation p.P183L 0.28 tolerated(0.4) benign(0.002) TCGA-EE-A3AE-06 1 156212553 156212553 C T PMF1-BGLAP Silent p.S181S 0.42 TCGA-EE-A3AE-06 1 156639958 156639958 C T NES Missense_Mutation p.G1341D 0.30 tolerated(0.24) benign(0.01) TCGA-EE-A3AE-06 1 156641818 156641818 G A NES Missense_Mutation p.P721L 0.30 tolerated(0.23) benign(0.008) TCGA-EE-A3AE-06 1 156821105 156821105 G A INSRR Silent p.I402I 0.51 TCGA-EE-A3AE-06 1 157522195 157522195 C T FCRL5 5'UTR 0.31 TCGA-EE-A3AE-06 1 157801710 157801710 G A CD5L 3'UTR 0.25 TCGA-EE-A3AE-06 1 158225874 158225874 C T CD1A Nonsense_Mutation p.Q136* 0.63 TCGA-EE-A3AE-06 1 158325184 158325184 C T CD1E Silent p.F150F 0.19 TCGA-EE-A3AE-06 1 158325781 158325781 G A CD1E Missense_Mutation p.D264N 0.32 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A3AE-06 1 158368446 158368446 C A OR10T2 Missense_Mutation p.D271Y 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 158368447 158368447 C T OR10T2 Silent p.K270K 0.21 TCGA-EE-A3AE-06 1 158368629 158368629 C T OR10T2 Missense_Mutation p.V210M 0.29 deleterious(0.05) benign(0.208) TCGA-EE-A3AE-06 1 158435491 158435491 C T OR10K1 Missense_Mutation p.S47F 0.22 deleterious(0.03) benign(0.043) TCGA-EE-A3AE-06 1 158580965 158580965 C T SPTA1 3'UTR 0.62 TCGA-EE-A3AE-06 1 158622263 158622263 G A SPTA1 Silent p.F1123F 0.27 TCGA-EE-A3AE-06 1 158724705 158724705 C T OR6K6 Nonsense_Mutation p.Q34* 0.19 TCGA-EE-A3AE-06 1 160165306 160165306 C T CASQ1 Silent p.F211F 0.25 TCGA-EE-A3AE-06 1 160456516 160456516 G A SLAMF6 Missense_Mutation p.A327V 0.30 tolerated(0.16) benign(0.314) TCGA-EE-A3AE-06 1 161277067 161277067 C T MPZ Missense_Mutation p.G72E 0.17 deleterious(0) benign(0.269) TCGA-EE-A3AE-06 1 162337098 162337098 C T NOS1AP Silent p.L454L 0.38 TCGA-EE-A3AE-06 1 163310153 163310153 G A NUF2 Splice_Site p.X203_splice 0.41 TCGA-EE-A3AE-06 1 16375068 16375068 C T CLCNKB Missense_Mutation p.P216S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 165183025 165183025 G A LMX1A Silent p.L174L 0.24 TCGA-EE-A3AE-06 1 168032874 168032874 C T DCAF6 Silent p.A772A 0.45 TCGA-EE-A3AE-06 1 169761679 169761679 C T METTL18 3'UTR 0.60 TCGA-EE-A3AE-06 1 171080110 171080110 G A FMO3 Missense_Mutation p.E267K 0.62 tolerated(0.14) benign(0.168) TCGA-EE-A3AE-06 1 171247933 171247933 G A FMO1 Missense_Mutation p.D184N 0.52 deleterious(0.05) possibly_damaging(0.902) TCGA-EE-A3AE-06 1 171292228 171292228 C T FMO4 Missense_Mutation p.P73L 0.61 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 1 17326935 17326935 G A ATP13A2 Missense_Mutation p.S267F 0.61 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AE-06 1 173552726 173552726 C T SLC9C2 Missense_Mutation p.E187K 0.50 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AE-06 1 173567128 173567128 G A SLC9C2 Missense_Mutation p.S91L 0.48 tolerated(0.38) possibly_damaging(0.519) TCGA-EE-A3AE-06 1 175049339 175049339 G A TNN Silent p.E275E 0.36 TCGA-EE-A3AE-06 1 175097242 175097242 C T TNN Silent p.S1040S 0.57 TCGA-EE-A3AE-06 1 176668361 176668361 C T PAPPA2 Nonsense_Mutation p.Q958* 0.30 TCGA-EE-A3AE-06 1 177911152 177911152 G A SEC16B Silent p.S635S 0.31 TCGA-EE-A3AE-06 1 179414189 179414189 G A AXDND1 Missense_Mutation p.E550K 0.47 tolerated(0.24) benign(0.176) TCGA-EE-A3AE-06 1 179632483 179632483 G A TDRD5 Missense_Mutation p.D836N 0.22 tolerated(0.17) benign(0.029) TCGA-EE-A3AE-06 1 17981152 17981152 C T ARHGEF10L Missense_Mutation p.P806S 0.46 deleterious(0.04) possibly_damaging(0.589) TCGA-EE-A3AE-06 1 179873116 179873116 C T TOR1AIP1 Missense_Mutation p.S252L 0.36 tolerated_low_confidence(0.09) benign(0.015) TCGA-EE-A3AE-06 1 180031373 180031373 C T CEP350 Nonsense_Mutation p.Q1761* 0.41 TCGA-EE-A3AE-06 1 181759621 181759621 C T CACNA1E Missense_Mutation p.P1943S 0.14 tolerated(0.19) benign(0.005) TCGA-EE-A3AE-06 1 181759622 181759622 C T CACNA1E Missense_Mutation p.P1943L 0.17 deleterious(0.01) benign(0.005) TCGA-EE-A3AE-06 1 181767745 181767745 C T CACNA1E Silent p.S2239S 0.28 TCGA-EE-A3AE-06 1 182025680 182025680 G A ZNF648 Missense_Mutation p.S489L 0.44 deleterious(0) probably_damaging(0.943) TCGA-EE-A3AE-06 1 186273345 186273345 A G PRG4 Missense_Mutation p.K142R 0.49 probably_damaging(0.954) TCGA-EE-A3AE-06 1 186287896 186287896 A C TPR Silent p.V2211V 0.61 TCGA-EE-A3AE-06 1 186648224 186648224 G A PTGS2 Silent p.F93F 0.19 TCGA-EE-A3AE-06 1 19477183 19477183 A C UBR4 Missense_Mutation p.F2440V 0.28 benign(0.178) TCGA-EE-A3AE-06 1 196398861 196398861 C T KCNT2 Missense_Mutation p.R222Q 0.50 deleterious(0) probably_damaging(0.955) TCGA-EE-A3AE-06 1 196874340 196874340 G A CFHR4 Missense_Mutation p.G119E 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 1 196920049 196920049 T C CFHR2 Silent p.G107G 0.43 TCGA-EE-A3AE-06 1 196973938 196973938 G A CFHR5 Missense_Mutation p.R493K 0.59 tolerated(0.15) benign(0.427) TCGA-EE-A3AE-06 1 200969077 200969077 G A KIF21B Silent p.A567A 0.49 TCGA-EE-A3AE-06 1 201043645 201043645 C T CACNA1S Silent p.R684R 0.44 TCGA-EE-A3AE-06 1 201355553 201355553 G A LAD1 Silent p.A312A 0.31 TCGA-EE-A3AE-06 1 20249233 20249233 C T PLA2G2E Missense_Mutation p.G19E 0.20 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AE-06 1 202861593 202861593 G A KLHL12 3'UTR 0.46 TCGA-EE-A3AE-06 1 203690437 203690437 C T ATP2B4 Missense_Mutation p.P904L 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 1 20412625 20412625 G A PLA2G5 Silent p.E30E 0.22 TCGA-EE-A3AE-06 1 205065952 205065952 G A RBBP5 Silent p.P418P 0.58 TCGA-EE-A3AE-06 1 205065953 205065953 G A RBBP5 Missense_Mutation p.P418L 0.56 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A3AE-06 1 205272647 205272647 G A NUAK2 Silent p.S606S 0.44 TCGA-EE-A3AE-06 1 205569598 205569598 G A MFSD4 3'UTR 0.25 TCGA-EE-A3AE-06 1 207039325 207039325 G A IL20 Missense_Mutation p.R43Q 0.40 tolerated(0.38) benign(0.061) TCGA-EE-A3AE-06 1 207796381 207796381 C T CR1 Silent p.F2440F 0.75 TCGA-EE-A3AE-06 1 209768407 209768407 G A CAMK1G Missense_Mutation p.E27K 0.47 deleterious(0.04) benign(0.06) TCGA-EE-A3AE-06 1 209786148 209786148 C T CAMK1G Silent p.V453V 0.28 TCGA-EE-A3AE-06 1 216850620 216850620 G A ESRRG Silent p.I95I 0.60 TCGA-EE-A3AE-06 1 21928204 21928204 G A RAP1GAP Missense_Mutation p.S606F 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 220284190 220284190 C T IARS2 Missense_Mutation p.P464S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 220284191 220284191 C T IARS2 Missense_Mutation p.P464L 0.33 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AE-06 1 220771689 220771689 G A MARK1 Missense_Mutation p.R109Q 0.27 deleterious(0) benign(0.249) TCGA-EE-A3AE-06 1 22206620 22206620 G A HSPG2 Missense_Mutation p.P775S 0.15 probably_damaging(0.99) TCGA-EE-A3AE-06 1 223991102 223991102 G A TP53BP2 Silent p.L234L 0.32 TCGA-EE-A3AE-06 1 226924447 226924447 G A ITPKB Missense_Mutation p.P238L 0.24 tolerated_low_confidence(0.33) benign(0.004) TCGA-EE-A3AE-06 1 228433237 228433237 A G OBSCN Missense_Mutation p.D1294G 0.27 possibly_damaging(0.742) TCGA-EE-A3AE-06 1 228474643 228474643 G A OBSCN Silent p.R3578R 0.59 TCGA-EE-A3AE-06 1 228509638 228509638 C T OBSCN Silent p.F5989F 0.35 TCGA-EE-A3AE-06 1 228547494 228547494 C T OBSCN Intron 0.31 TCGA-EE-A3AE-06 1 228547848 228547848 G A OBSCN Intron 0.41 TCGA-EE-A3AE-06 1 23239983 23239983 G A EPHB2 Missense_Mutation p.A962T 0.39 tolerated(0.12) probably_damaging(0.925) TCGA-EE-A3AE-06 1 233120181 233120181 C T PCNXL2 Missense_Mutation p.G2095R 0.29 tolerated_low_confidence(0.29) benign(0.004) TCGA-EE-A3AE-06 1 233313582 233313582 G A PCNXL2 Missense_Mutation p.A1080V 0.57 tolerated(0.42) benign(0.011) TCGA-EE-A3AE-06 1 233393932 233393932 G A PCNXL2 Missense_Mutation p.S559F 0.47 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AE-06 1 233394212 233394212 G A PCNXL2 Nonsense_Mutation p.Q466* 0.41 TCGA-EE-A3AE-06 1 236631543 236631543 G A EDARADD Missense_Mutation p.G78S 0.20 tolerated(0.35) benign(0.099) TCGA-EE-A3AE-06 1 240071162 240071162 G A CHRM3 Silent p.G137G 0.35 TCGA-EE-A3AE-06 1 240256706 240256706 C T FMN2 Missense_Mutation p.P433S 0.53 unknown(0) TCGA-EE-A3AE-06 1 240370099 240370099 G A FMN2 Missense_Mutation p.E663K 0.31 unknown(0) TCGA-EE-A3AE-06 1 242023951 242023951 C T EXO1 Missense_Mutation p.P297S 0.44 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 1 245582915 245582915 G A KIF26B Missense_Mutation p.G345E 0.35 tolerated(0.05) unknown(0) TCGA-EE-A3AE-06 1 247588527 247588527 G A NLRP3 Silent p.K594K 0.20 TCGA-EE-A3AE-06 1 247737515 247737515 C T GCSAML Missense_Mutation p.S80F 0.24 tolerated(0.09) possibly_damaging(0.563) TCGA-EE-A3AE-06 1 247875253 247875253 C T OR6F1 Missense_Mutation p.D269N 0.52 tolerated(0.31) benign(0.11) TCGA-EE-A3AE-06 1 248059858 248059858 C T OR2W3 3'UTR 0.40 TCGA-EE-A3AE-06 1 248512570 248512570 C T OR14C36 Missense_Mutation p.P165L 0.46 deleterious(0.02) benign(0.048) TCGA-EE-A3AE-06 1 248616128 248616128 C T OR2T2 Silent p.S10S 0.10 TCGA-EE-A3AE-06 1 26288439 26288439 G A PAFAH2 3'UTR 0.49 TCGA-EE-A3AE-06 1 27190040 27190040 G A SFN Missense_Mutation p.D113N 0.58 tolerated_low_confidence(0.76) benign(0.032) TCGA-EE-A3AE-06 1 27706498 27706498 G A CD164L2 3'UTR 0.27 TCGA-EE-A3AE-06 1 28280972 28280972 G A SMPDL3B Missense_Mutation p.D209N 0.52 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 1 29365861 29365861 C T EPB41 Missense_Mutation p.A520V 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AE-06 1 29639145 29639145 G A PTPRU Missense_Mutation p.G1062R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 34080130 34080130 C T CSMD2 Nonsense_Mutation p.W1996* 0.33 TCGA-EE-A3AE-06 1 34190255 34190255 C T CSMD2 Missense_Mutation p.G876R 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 1 34190264 34190264 G A CSMD2 Missense_Mutation p.P873S 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AE-06 1 38174101 38174101 C T CDCA8 3'UTR 0.38 TCGA-EE-A3AE-06 1 38230742 38230742 C T EPHA10 5'Flank 0.43 TCGA-EE-A3AE-06 1 38230743 38230743 C T EPHA10 5'Flank 0.43 TCGA-EE-A3AE-06 1 39500128 39500128 C T NDUFS5 Missense_Mutation p.P94L 0.26 deleterious(0) possibly_damaging(0.677) TCGA-EE-A3AE-06 1 39801408 39801408 C T MACF1 Intron 0.17 TCGA-EE-A3AE-06 1 39801409 39801409 C T MACF1 Intron 0.17 TCGA-EE-A3AE-06 1 42621240 42621240 G A GUCA2B Silent p.V104V 0.25 TCGA-EE-A3AE-06 1 42865257 42865257 C T RIMKLA Nonsense_Mutation p.Q116* 0.75 TCGA-EE-A3AE-06 1 43779609 43779609 G A TIE1 Silent p.R793R 0.11 TCGA-EE-A3AE-06 1 45341351 45341351 G T EIF2B3 Missense_Mutation p.S331Y 0.22 deleterious(0.03) benign(0.062) TCGA-EE-A3AE-06 1 45477879 45477879 G A UROD 5'UTR 0.57 TCGA-EE-A3AE-06 1 46871062 46871062 G A FAAH Missense_Mutation p.G155S 0.52 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AE-06 1 46978015 46978015 G A DMBX1 Missense_Mutation p.G328D 0.32 tolerated_low_confidence(0.37) possibly_damaging(0.64) TCGA-EE-A3AE-06 1 47348960 47348960 C T CYP4Z2P RNA 0.38 TCGA-EE-A3AE-06 1 47398709 47398709 G A CYP4A11 Silent p.V411V 0.51 TCGA-EE-A3AE-06 1 47402414 47402414 C T CYP4A11 Silent p.R144R 0.39 TCGA-EE-A3AE-06 1 47402415 47402415 C T CYP4A11 Missense_Mutation p.R144Q 0.41 tolerated(0.08) benign(0.327) TCGA-EE-A3AE-06 1 48701516 48701516 G A SLC5A9 Silent p.R444R 0.24 TCGA-EE-A3AE-06 1 50661245 50661245 G A ELAVL4 Missense_Mutation p.G191E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 53556325 53556325 G A SLC1A7 Silent p.V395V 0.52 TCGA-EE-A3AE-06 1 53723019 53723019 T G LRP8 Missense_Mutation p.E776A 0.44 tolerated(0.32) benign(0.009) TCGA-EE-A3AE-06 1 55088965 55088965 G A FAM151A Missense_Mutation p.T35I 0.26 tolerated(0.15) benign(0.003) TCGA-EE-A3AE-06 1 55145668 55145668 C T MROH7 Silent p.F777F 0.30 TCGA-EE-A3AE-06 1 55282787 55282787 G C C1orf177 Missense_Mutation p.M392I 0.32 tolerated(0.36) benign(0.012) TCGA-EE-A3AE-06 1 57161759 57161759 C T PRKAA2 Missense_Mutation p.R239C 0.26 deleterious(0.02) possibly_damaging(0.521) TCGA-EE-A3AE-06 1 57399065 57399065 C T C8B Missense_Mutation p.E499K 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 1 57417763 57417763 C T C8B Silent p.T208T 0.21 TCGA-EE-A3AE-06 1 57611022 57611022 C T DAB1 Missense_Mutation p.D50N 0.55 deleterious(0) possibly_damaging(0.774) TCGA-EE-A3AE-06 1 57611094 57611094 G A DAB1 Missense_Mutation p.R26C 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 1 62626602 62626602 G A INADL Missense_Mutation p.D1801N 0.17 tolerated_low_confidence(0.11) benign(0.001) TCGA-EE-A3AE-06 1 65878698 65878698 C T DNAJC6 Missense_Mutation p.P968L 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 1 75684294 75684294 G A SLC44A5 Silent p.F470F 0.28 TCGA-EE-A3AE-06 1 79095560 79095560 A T IFI44L Missense_Mutation p.Q228L 0.45 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AE-06 1 82456075 82456075 G A LPHN2 Missense_Mutation p.G1153E 0.50 tolerated(0.28) possibly_damaging(0.561) TCGA-EE-A3AE-06 1 85573801 85573801 C T WDR63 Missense_Mutation p.P547S 0.11 deleterious(0.04) benign(0.117) TCGA-EE-A3AE-06 1 909347 909347 G A PLEKHN1 Silent p.K523K 0.20 TCGA-EE-A3AE-06 1 94643687 94643687 G A ARHGAP29 Silent p.S839S 0.16 TCGA-EE-A3AE-06 1 94668094 94668094 C T ARHGAP29 Intron 0.36 TCGA-EE-A3AE-06 1 94668540 94668540 C T ARHGAP29 Silent p.R296R 0.16 TCGA-EE-A3AE-06 1 98039340 98039340 C T DPYD Missense_Mutation p.G439S 0.16 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AE-06 20 10025188 10025188 C T ANKEF1 Silent p.F231F 0.39 TCGA-EE-A3AE-06 20 1600605 1600605 G A SIRPB1 5'UTR 0.26 TCGA-EE-A3AE-06 20 1638346 1638346 G A SIRPG Silent p.A5A 0.42 TCGA-EE-A3AE-06 20 17479505 17479505 G A BFSP1 Silent p.L306L 0.40 TCGA-EE-A3AE-06 20 20033166 20033166 C T CRNKL1 Missense_Mutation p.G102R 0.57 deleterious_low_confidence(0) benign(0) TCGA-EE-A3AE-06 20 22563463 22563463 C T FOXA2 Missense_Mutation p.M139I 0.40 deleterious(0) benign(0.439) TCGA-EE-A3AE-06 20 23473643 23473643 G A CST8 Missense_Mutation p.D94N 0.44 tolerated(0.45) benign(0.001) TCGA-EE-A3AE-06 20 23545669 23545669 G A CST9L Silent p.F120F 0.43 TCGA-EE-A3AE-06 20 2377257 2377257 G A TGM6 Nonsense_Mutation p.W177* 0.34 TCGA-EE-A3AE-06 20 239983 239983 T G DEFB132 3'UTR 0.43 TCGA-EE-A3AE-06 20 24646002 24646002 G A SYNDIG1 Silent p.K213K 0.45 TCGA-EE-A3AE-06 20 30584557 30584557 G A XKR7 Missense_Mutation p.G346E 0.52 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A3AE-06 20 30616856 30616856 C T CCM2L Silent p.S376S 0.42 TCGA-EE-A3AE-06 20 31609150 31609150 G A BPIFB2 Missense_Mutation p.A420T 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 20 32232206 32232206 C T CBFA2T2 Silent p.I523I 0.42 TCGA-EE-A3AE-06 20 33451191 33451191 G A GGT7 Silent p.I110I 0.41 TCGA-EE-A3AE-06 20 34800287 34800287 G A EPB41L1 Missense_Mutation p.D725N 0.33 tolerated(0.12) benign(0.076) TCGA-EE-A3AE-06 20 35882719 35882719 C T GHRH Missense_Mutation p.E68K 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A3AE-06 20 36407715 36407715 C T CTNNBL1 Nonsense_Mutation p.Q337* 0.42 TCGA-EE-A3AE-06 20 36640472 36640472 C T TTI1 Missense_Mutation p.E583K 0.42 tolerated(0.16) benign(0.009) TCGA-EE-A3AE-06 20 37353724 37353724 G A SLC32A1 Nonsense_Mutation p.W119* 0.44 TCGA-EE-A3AE-06 20 39831445 39831445 A C ZHX3 Silent p.G704G 0.16 TCGA-EE-A3AE-06 20 40033600 40033600 G A CHD6 Missense_Mutation p.S2594F 0.45 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3AE-06 20 41076908 41076908 G A PTPRT Silent p.I504I 0.40 TCGA-EE-A3AE-06 20 43142677 43142677 G A SERINC3 Missense_Mutation p.P15L 0.46 tolerated(0.09) probably_damaging(0.993) TCGA-EE-A3AE-06 20 43723405 43723405 C T KCNS1 3'UTR 0.37 TCGA-EE-A3AE-06 20 43850423 43850423 A T SEMG2 Silent p.G50G 0.43 TCGA-EE-A3AE-06 20 43882237 43882237 G A SLPI Missense_Mutation p.P75S 0.38 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AE-06 20 45875210 45875210 G A ZMYND8 Missense_Mutation p.S609L 0.45 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-EE-A3AE-06 20 46256463 46256463 C T NCOA3 Nonsense_Mutation p.Q231* 0.28 TCGA-EE-A3AE-06 20 50245611 50245611 C T ATP9A Missense_Mutation p.D557N 0.27 tolerated(0.1) benign(0.031) TCGA-EE-A3AE-06 20 51872073 51872073 C T TSHZ2 Silent p.I692I 0.50 TCGA-EE-A3AE-06 20 52645107 52645107 C T BCAS1 Missense_Mutation p.E183K 0.44 tolerated(0.42) possibly_damaging(0.828) TCGA-EE-A3AE-06 20 5294827 5294827 G A PROKR2 Silent p.I63I 0.38 TCGA-EE-A3AE-06 20 54972861 54972861 C T CSTF1 Silent p.S203S 0.19 TCGA-EE-A3AE-06 20 55211688 55211688 G A TFAP2C Silent p.R315R 0.46 TCGA-EE-A3AE-06 20 56078532 56078532 C T CTCFL Silent p.K600K 0.41 TCGA-EE-A3AE-06 20 57036049 57036049 C T APCDD1L Missense_Mutation p.G435S 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 20 57251371 57251371 C T STX16 3'UTR 0.46 TCGA-EE-A3AE-06 20 57251372 57251372 C T STX16 3'UTR 0.47 TCGA-EE-A3AE-06 20 58467646 58467646 G A SYCP2 Missense_Mutation p.S635L 0.49 tolerated(0.25) benign(0.021) TCGA-EE-A3AE-06 20 58519433 58519433 C T FAM217B Silent p.F145F 0.43 TCGA-EE-A3AE-06 20 60509225 60509225 C T CDH4 Missense_Mutation p.P831S 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 20 60901736 60901736 C T LAMA5 Silent p.V1765V 0.42 TCGA-EE-A3AE-06 20 61143708 61143708 C T C20orf166 5'Flank 0.44 TCGA-EE-A3AE-06 20 61340784 61340784 G A NTSR1 Silent p.V75V 0.33 TCGA-EE-A3AE-06 20 61340785 61340785 G A NTSR1 Missense_Mutation p.V76M 0.34 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A3AE-06 20 61941759 61941759 C T COL20A1 Silent p.S430S 0.51 TCGA-EE-A3AE-06 20 61981533 61981533 G A CHRNA4 Silent p.V410V 0.40 TCGA-EE-A3AE-06 20 61982226 61982226 G A CHRNA4 Silent p.F179F 0.18 TCGA-EE-A3AE-06 20 826356 826356 C T FAM110A 3'UTR 0.50 TCGA-EE-A3AE-06 20 8678349 8678349 G A PLCB1 Silent p.L362L 0.44 TCGA-EE-A3AE-06 20 9317845 9317845 G A PLCB4 Missense_Mutation p.E53K 0.45 deleterious(0.01) benign(0.226) TCGA-EE-A3AE-06 20 9416266 9416266 G A PLCB4 Missense_Mutation p.D850N 0.34 tolerated(0.39) possibly_damaging(0.7) TCGA-EE-A3AE-06 20 9546751 9546751 G A PAK7 Missense_Mutation p.P424L 0.43 deleterious(0) benign(0.36) TCGA-EE-A3AE-06 21 10910393 10910393 C T TPTE Missense_Mutation p.D455N 0.23 tolerated(0.07) benign(0.012) TCGA-EE-A3AE-06 21 11039003 11039003 G A BAGE2 RNA 0.09 TCGA-EE-A3AE-06 21 30693736 30693736 C T BACH1 Silent p.F45F 0.19 TCGA-EE-A3AE-06 21 31874267 31874267 A G KRTAP19-5 Missense_Mutation p.S48P 0.44 tolerated_low_confidence(0.35) unknown(0) TCGA-EE-A3AE-06 21 33340639 33340639 C T HUNK Missense_Mutation p.R318C 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AE-06 21 33671237 33671237 G A MRAP Intron 0.67 TCGA-EE-A3AE-06 21 34922795 34922795 C T SON Missense_Mutation p.L420F 0.29 possibly_damaging(0.587) TCGA-EE-A3AE-06 21 34958483 34958483 G A DONSON Missense_Mutation p.S136L 0.35 tolerated(0.52) benign(0.002) TCGA-EE-A3AE-06 21 39870387 39870387 T C ERG Intron 0.78 TCGA-EE-A3AE-06 22 17071934 17071934 C T CCT8L2 Missense_Mutation p.G503R 0.61 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AE-06 22 17072290 17072290 C T CCT8L2 Missense_Mutation p.G384E 0.58 deleterious(0.03) probably_damaging(0.94) TCGA-EE-A3AE-06 22 17472821 17472821 C T GAB4 Missense_Mutation p.M140I 0.73 deleterious(0) possibly_damaging(0.537) TCGA-EE-A3AE-06 22 17688079 17688079 C T CECR1 Missense_Mutation p.G142R 0.73 tolerated(0.14) benign(0.012) TCGA-EE-A3AE-06 22 17688080 17688080 C T CECR1 Silent p.R141R 0.74 TCGA-EE-A3AE-06 22 18022175 18022175 G A CECR2 Silent p.T760T 0.21 TCGA-EE-A3AE-06 22 18028180 18028180 G A CECR2 Missense_Mutation p.G1047E 0.64 tolerated_low_confidence(0.06) possibly_damaging(0.905) TCGA-EE-A3AE-06 22 19036104 19036104 G A DGCR2 Silent p.F285F 0.63 TCGA-EE-A3AE-06 22 22931009 22931009 G A IGLV2-33 Silent p.L68L 0.34 TCGA-EE-A3AE-06 22 25145660 25145660 C T PIWIL3 Missense_Mutation p.G406S 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 22 27003979 27003979 G A CRYBB1 Silent p.V102V 0.18 TCGA-EE-A3AE-06 22 29704232 29704232 C T GAS2L1 Missense_Mutation p.P46L 0.31 tolerated(0.14) probably_damaging(1) TCGA-EE-A3AE-06 22 29885807 29885807 G A NEFH Silent p.V726V 0.55 TCGA-EE-A3AE-06 22 30639706 30639706 C T LIF Silent p.K181K 0.22 TCGA-EE-A3AE-06 22 30891309 30891309 C T SEC14L4 Missense_Mutation p.D119N 0.34 deleterious(0.04) benign(0.009) TCGA-EE-A3AE-06 22 31486981 31486981 C T SMTN Silent p.F324F 0.64 TCGA-EE-A3AE-06 22 32302560 32302560 C T DEPDC5 3'UTR 0.70 TCGA-EE-A3AE-06 22 32589333 32589333 C T RFPL2 Intron 0.33 TCGA-EE-A3AE-06 22 33253278 33253278 C T TIMP3 Missense_Mutation p.H83Y 0.59 tolerated(1) benign(0) TCGA-EE-A3AE-06 22 37458697 37458697 C A KCTD17 3'UTR 0.82 TCGA-EE-A3AE-06 22 38245426 38245426 C T EIF3L 5'UTR 0.64 TCGA-EE-A3AE-06 22 39077956 39077956 C T TOMM22 5'UTR 0.71 TCGA-EE-A3AE-06 22 39884193 39884193 G A MGAT3 Missense_Mutation p.G281S 0.62 deleterious(0.02) possibly_damaging(0.82) TCGA-EE-A3AE-06 22 40076988 40076988 C T CACNA1I Silent p.S1865S 0.66 TCGA-EE-A3AE-06 22 40719215 40719215 C T TNRC6B Silent p.D1824D 0.35 TCGA-EE-A3AE-06 22 40719216 40719216 C T TNRC6B Missense_Mutation p.L1825F 0.35 tolerated(0.11) unknown(0) TCGA-EE-A3AE-06 22 40813460 40813460 G A MKL1 Missense_Mutation p.S701F 0.17 deleterious(0) benign(0.084) TCGA-EE-A3AE-06 22 42783016 42783016 G A NFAM1 Silent p.A244A 0.16 TCGA-EE-A3AE-06 22 43089153 43089153 C T A4GALT Missense_Mutation p.E269K 0.77 tolerated(0.08) benign(0.007) TCGA-EE-A3AE-06 22 43089247 43089247 G A A4GALT Silent p.F237F 0.46 TCGA-EE-A3AE-06 22 43831072 43831072 C T MPPED1 Missense_Mutation p.H115Y 0.78 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AE-06 22 44168909 44168909 C T EFCAB6 Missense_Mutation p.G72R 0.22 tolerated(0.85) benign(0.012) TCGA-EE-A3AE-06 22 45923749 45923749 T C FBLN1 Missense_Mutation p.L115P 0.17 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AE-06 22 46614211 46614211 C T PPARA Missense_Mutation p.R141C 0.76 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AE-06 22 50682881 50682881 C T TUBGCP6 Missense_Mutation p.S3N 0.11 deleterious(0) benign(0.154) TCGA-EE-A3AE-06 22 50906282 50906282 G A SBF1 Missense_Mutation p.T71I 0.73 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 22 51178327 51178327 C T ACR Silent p.L163L 0.67 TCGA-EE-A3AE-06 2 100058806 100058806 T C REV1 Missense_Mutation p.N159S 0.58 tolerated(0.33) benign(0.008) TCGA-EE-A3AE-06 2 101086975 101086975 C T NMS Missense_Mutation p.P9S 0.37 tolerated(0.08) benign(0.013) TCGA-EE-A3AE-06 2 102984340 102984340 G A IL18R1 Silent p.L38L 0.38 TCGA-EE-A3AE-06 2 103120101 103120101 C T SLC9A4 Silent p.I305I 0.49 TCGA-EE-A3AE-06 2 108488746 108488746 G A RGPD4 Nonsense_Mutation p.W1429* 0.34 TCGA-EE-A3AE-06 2 111666453 111666453 C T ACOXL Silent p.A292A 0.25 TCGA-EE-A3AE-06 2 112541923 112541923 G A ANAPC1 Missense_Mutation p.P1658S 0.18 deleterious(0.01) benign(0.419) TCGA-EE-A3AE-06 2 113514124 113514124 G A CKAP2L Missense_Mutation p.S275L 0.46 tolerated(0.22) benign(0.004) TCGA-EE-A3AE-06 2 113820294 113820294 C T IL36RN 3'UTR 0.50 TCGA-EE-A3AE-06 2 118753059 118753059 C T CCDC93 Missense_Mutation p.R161K 0.31 tolerated(0.3) benign(0.015) TCGA-EE-A3AE-06 2 119748178 119748178 G A MARCO Silent p.Q359Q 0.36 TCGA-EE-A3AE-06 2 119750850 119750850 G A MARCO Missense_Mutation p.G468E 0.41 deleterious(0) unknown(0) TCGA-EE-A3AE-06 2 121554867 121554867 G A GLI2 Intron 0.41 TCGA-EE-A3AE-06 2 125547701 125547701 G A CNTNAP5 Missense_Mutation p.G991E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 2 128388855 128388855 C T MYO7B Missense_Mutation p.S1645F 0.56 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3AE-06 2 130877771 130877771 G A POTEF Silent p.F106F 0.26 TCGA-EE-A3AE-06 2 130878064 130878064 G A POTEF Missense_Mutation p.P9S 0.26 deleterious_low_confidence(0.04) benign(0.1) TCGA-EE-A3AE-06 2 131519860 131519860 T G AMER3 Missense_Mutation p.L72R 0.71 tolerated(0.48) benign(0.079) TCGA-EE-A3AE-06 2 132021764 132021764 C T POTEE Silent p.I912I 0.16 TCGA-EE-A3AE-06 2 133175080 133175080 G A GPR39 Silent p.L155L 0.38 TCGA-EE-A3AE-06 2 133175290 133175290 C T GPR39 Silent p.F225F 0.47 TCGA-EE-A3AE-06 2 133539521 133539521 G A NCKAP5 Silent p.L1621L 0.08 TCGA-EE-A3AE-06 2 135659392 135659392 C T ACMSD Silent p.L325L 0.53 TCGA-EE-A3AE-06 2 136396198 136396198 C T R3HDM1 Missense_Mutation p.S305F 0.15 deleterious(0) benign(0.005) TCGA-EE-A3AE-06 2 136548269 136548269 C T LCT Missense_Mutation p.R1765K 0.31 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AE-06 2 137872796 137872796 G A THSD7B Silent p.G434G 0.27 TCGA-EE-A3AE-06 2 141122324 141122324 G A LRP1B Silent p.F3679F 0.40 TCGA-EE-A3AE-06 2 141607776 141607776 C T LRP1B Missense_Mutation p.D1612N 0.32 possibly_damaging(0.539) TCGA-EE-A3AE-06 2 1440077 1440077 C T TPO Missense_Mutation p.P135S 0.38 tolerated(0.1) benign(0.14) TCGA-EE-A3AE-06 2 149226637 149226637 C T MBD5 Silent p.I375I 0.41 TCGA-EE-A3AE-06 2 152409917 152409917 C T NEB Missense_Mutation p.D6576N 0.26 benign(0.01) TCGA-EE-A3AE-06 2 152427047 152427047 G A NEB Silent p.I5694I 0.48 TCGA-EE-A3AE-06 2 155307110 155307110 C T GALNT13 3'UTR 0.42 TCGA-EE-A3AE-06 2 160035306 160035306 C T TANC1 Silent p.F714F 0.35 TCGA-EE-A3AE-06 2 160599677 160599677 C T MARCH7 Missense_Mutation p.H87Y 0.33 tolerated(1) benign(0.016) TCGA-EE-A3AE-06 2 162273610 162273610 G A TBR1 Missense_Mutation p.G230E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 2 163075645 163075645 G A FAP Missense_Mutation p.P179S 0.42 tolerated(0.28) benign(0.069) TCGA-EE-A3AE-06 2 163144699 163144699 T C IFIH1 Silent p.L347L 0.18 TCGA-EE-A3AE-06 2 163250911 163250911 C T KCNH7 Missense_Mutation p.E900K 0.38 tolerated(0.85) benign(0.001) TCGA-EE-A3AE-06 2 163374646 163374646 G A KCNH7 Silent p.F162F 0.60 TCGA-EE-A3AE-06 2 1651961 1651961 G A PXDN Silent p.I1197I 0.30 TCGA-EE-A3AE-06 2 166170230 166170230 C T SCN2A Missense_Mutation p.R379C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 2 166805859 166805859 C T TTC21B Intron 0.47 TCGA-EE-A3AE-06 2 167142982 167142982 G A SCN9A Missense_Mutation p.S489F 0.31 deleterious(0.01) benign(0.036) TCGA-EE-A3AE-06 2 167168167 167168167 C T SCN9A Missense_Mutation p.E34K 0.32 tolerated(1) benign(0.001) TCGA-EE-A3AE-06 2 168096396 168096396 C T XIRP2 Missense_Mutation p.S297L 0.39 benign(0.039) TCGA-EE-A3AE-06 2 168100225 168100225 G A XIRP2 Missense_Mutation p.E775K 0.52 probably_damaging(0.999) TCGA-EE-A3AE-06 2 168106316 168106316 G A XIRP2 Missense_Mutation p.R2805K 0.58 benign(0.003) TCGA-EE-A3AE-06 2 169787294 169787294 C T ABCB11 Missense_Mutation p.G1098S 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3AE-06 2 169825918 169825918 G A ABCB11 Silent p.F651F 0.67 TCGA-EE-A3AE-06 2 170063573 170063573 G A LRP2 Silent p.F2219F 0.33 TCGA-EE-A3AE-06 2 170145580 170145580 G A LRP2 Missense_Mutation p.P333L 0.34 benign(0.32) TCGA-EE-A3AE-06 2 170677747 170677747 C T METTL5 Silent p.L87L 0.27 TCGA-EE-A3AE-06 2 174074498 174074498 C T MLTK Silent p.S262S 0.34 TCGA-EE-A3AE-06 2 178879178 178879178 A G PDE11A Missense_Mutation p.F308L 0.50 deleterious(0) probably_damaging(0.95) TCGA-EE-A3AE-06 2 179398792 179398792 C T TTN Missense_Mutation p.E34184K 0.50 TCGA-EE-A3AE-06 2 179413262 179413262 C T TTN Missense_Mutation p.G31031R 0.37 TCGA-EE-A3AE-06 2 179413263 179413263 C T TTN Silent p.R31030R 0.37 TCGA-EE-A3AE-06 2 179427023 179427023 C T TTN Missense_Mutation p.D27946N 0.41 TCGA-EE-A3AE-06 2 179430967 179430967 C T TTN Missense_Mutation p.G26631D 0.40 TCGA-EE-A3AE-06 2 179433237 179433237 A G TTN Silent p.N25874N 0.33 TCGA-EE-A3AE-06 2 179435234 179435234 C T TTN Missense_Mutation p.E25209K 0.24 TCGA-EE-A3AE-06 2 179496982 179496982 C T TTN Missense_Mutation p.E14547K 0.38 TCGA-EE-A3AE-06 2 179575440 179575440 C T TTN Missense_Mutation p.G9462R 0.40 TCGA-EE-A3AE-06 2 179578871 179578871 G A TTN Silent p.S8838S 0.42 TCGA-EE-A3AE-06 2 179579087 179579087 C T TTN Missense_Mutation p.G8805E 0.41 TCGA-EE-A3AE-06 2 179586793 179586793 C T TTN Missense_Mutation p.D7533N 0.36 TCGA-EE-A3AE-06 2 179616512 179616512 G A TTN Intron 0.23 TCGA-EE-A3AE-06 2 179649068 179649068 G A TTN Missense_Mutation p.A835V 0.61 TCGA-EE-A3AE-06 2 179701879 179701879 G T CCDC141 Missense_Mutation p.T1356N 0.32 deleterious(0.05) probably_damaging(0.988) TCGA-EE-A3AE-06 2 179702336 179702336 C T CCDC141 Missense_Mutation p.E1204K 0.33 deleterious(0.02) possibly_damaging(0.627) TCGA-EE-A3AE-06 2 179714835 179714835 C T CCDC141 Missense_Mutation p.V1100I 0.23 tolerated(1) benign(0.101) TCGA-EE-A3AE-06 2 179736252 179736252 C T CCDC141 Missense_Mutation p.E703K 0.36 tolerated(0.05) possibly_damaging(0.823) TCGA-EE-A3AE-06 2 182403982 182403982 G A CERKL Missense_Mutation p.P485S 0.35 tolerated(0.33) benign(0.02) TCGA-EE-A3AE-06 2 182766562 182766562 C T SSFA2 Missense_Mutation p.S261F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 2 183993134 183993134 A T NUP35 Missense_Mutation p.I54F 0.29 tolerated(0.8) benign(0) TCGA-EE-A3AE-06 2 185802974 185802974 C T ZNF804A Missense_Mutation p.P951S 0.45 tolerated(0.16) probably_damaging(0.992) TCGA-EE-A3AE-06 2 185802980 185802980 C T ZNF804A Nonsense_Mutation p.Q953* 0.47 TCGA-EE-A3AE-06 2 186689207 186689207 G A FSIP2 Missense_Mutation p.E6914K 0.36 benign(0.286) TCGA-EE-A3AE-06 2 187712504 187712504 G A ZSWIM2 Missense_Mutation p.H62Y 0.45 deleterious(0.02) benign(0.207) TCGA-EE-A3AE-06 2 1921070 1921070 G A MYT1L Missense_Mutation p.P507S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 2 192206274 192206274 C T MYO1B Missense_Mutation p.S145F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 2 192700988 192700988 G A SDPR Silent p.T313T 0.43 TCGA-EE-A3AE-06 2 198273101 198273101 G A SF3B1 Missense_Mutation p.P370L 0.30 deleterious(0) possibly_damaging(0.896) TCGA-EE-A3AE-06 2 198274716 198274716 G A SF3B1 Missense_Mutation p.P228S 0.37 tolerated(0.25) benign(0.101) TCGA-EE-A3AE-06 2 1983324 1983324 G A MYT1L Missense_Mutation p.P20S 0.56 tolerated(0.1) unknown(0) TCGA-EE-A3AE-06 2 201722764 201722764 G A CLK1 Silent p.Y241Y 0.48 TCGA-EE-A3AE-06 2 202569290 202569290 G A ALS2 Silent p.I1575I 0.39 TCGA-EE-A3AE-06 2 204735491 204735491 C T CTLA4 Silent p.L98L 0.28 TCGA-EE-A3AE-06 2 204824436 204824436 T A ICOS 3'UTR 0.50 TCGA-EE-A3AE-06 2 205983712 205983712 G A PARD3B Missense_Mutation p.E250K 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 2 206656988 206656988 G A NRP2 Missense_Mutation p.G824R 0.29 tolerated(0.37) benign(0.005) TCGA-EE-A3AE-06 2 207169741 207169741 C T ZDBF2 Silent p.N163N 0.32 TCGA-EE-A3AE-06 2 207171980 207171980 G A ZDBF2 Missense_Mutation p.E910K 0.31 tolerated(0.13) possibly_damaging(0.678) TCGA-EE-A3AE-06 2 207175286 207175286 C T ZDBF2 Missense_Mutation p.L2012F 0.29 tolerated(0.27) possibly_damaging(0.587) TCGA-EE-A3AE-06 2 207175935 207175935 C T ZDBF2 Missense_Mutation p.S2228L 0.38 tolerated(0.66) benign(0.32) TCGA-EE-A3AE-06 2 208488982 208488982 G C METTL21A Missense_Mutation p.L40V 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A3AE-06 2 211540509 211540509 C T CPS1 Missense_Mutation p.P1413S 0.44 tolerated(0.41) benign(0.318) TCGA-EE-A3AE-06 2 21230565 21230565 G A APOB Missense_Mutation p.R3059C 0.44 benign(0.083) TCGA-EE-A3AE-06 2 217142558 217142558 C T MARCH4 Silent p.E234E 0.38 TCGA-EE-A3AE-06 2 219028998 219028998 G A CXCR1 Missense_Mutation p.R313C 0.29 deleterious(0.01) possibly_damaging(0.726) TCGA-EE-A3AE-06 2 219875569 219875569 C T CCDC108 Silent p.R1369R 0.41 TCGA-EE-A3AE-06 2 220079733 220079733 A C ABCB6 Missense_Mutation p.F409C 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 2 220161722 220161722 G A PTPRN Missense_Mutation p.P741S 0.39 tolerated(0.08) benign(0.422) TCGA-EE-A3AE-06 2 220172277 220172277 C T PTPRN Missense_Mutation p.G57S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 2 220290784 220290784 C T DES 3'UTR 0.54 TCGA-EE-A3AE-06 2 222307622 222307622 G A EPHA4 Silent p.F667F 0.38 TCGA-EE-A3AE-06 2 227973564 227973564 C T COL4A4 Silent p.G226G 0.39 TCGA-EE-A3AE-06 2 228884529 228884529 G A SPHKAP Silent p.S347S 0.42 TCGA-EE-A3AE-06 2 234178648 234178648 G A ATG16L1 Silent p.R214R 0.24 TCGA-EE-A3AE-06 2 234590830 234590830 C T UGT1A7 Silent p.L83L 0.50 TCGA-EE-A3AE-06 2 238267682 238267682 C T COL6A3 Missense_Mutation p.R2135K 0.46 possibly_damaging(0.688) TCGA-EE-A3AE-06 2 238296652 238296652 G A COL6A3 Silent p.S295S 0.30 TCGA-EE-A3AE-06 2 241069409 241069409 G A MYEOV2 Silent p.S100S 0.39 TCGA-EE-A3AE-06 2 241069410 241069410 G A MYEOV2 Missense_Mutation p.S100F 0.41 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AE-06 2 25611084 25611084 C T DTNB Silent p.E574E 0.54 TCGA-EE-A3AE-06 2 26505710 26505710 C T HADHB Intron 0.68 TCGA-EE-A3AE-06 2 26707409 26707409 C T OTOF Missense_Mutation p.V380M 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A3AE-06 2 26950690 26950690 C T KCNK3 Silent p.L147L 0.39 TCGA-EE-A3AE-06 2 26951294 26951294 G A KCNK3 Missense_Mutation p.G348E 0.42 tolerated_low_confidence(0.27) probably_damaging(0.931) TCGA-EE-A3AE-06 2 27257114 27257114 C T TMEM214 Silent p.L111L 0.36 TCGA-EE-A3AE-06 2 27279611 27279611 G A AGBL5 Missense_Mutation p.E496K 0.44 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AE-06 2 27327256 27327256 G A CGREF1 Intron 0.30 TCGA-EE-A3AE-06 2 27423910 27423910 G A SLC5A6 Missense_Mutation p.P574S 0.49 tolerated(0.2) probably_damaging(0.995) TCGA-EE-A3AE-06 2 27430263 27430263 G A SLC5A6 Silent p.L86L 0.51 TCGA-EE-A3AE-06 2 27552100 27552100 G A GTF3C2 Missense_Mutation p.L643F 0.38 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AE-06 2 27746262 27746262 C A GCKR Missense_Mutation p.R612S 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-EE-A3AE-06 2 29001759 29001759 G A PPP1CB Missense_Mutation p.G90E 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A3AE-06 2 29247148 29247148 C T FAM179A Silent p.F587F 0.56 TCGA-EE-A3AE-06 2 29296861 29296861 C T C2orf71 Missense_Mutation p.M89I 0.36 tolerated(0.1) benign(0.045) TCGA-EE-A3AE-06 2 29368224 29368224 C T CLIP4 Missense_Mutation p.P338S 0.26 tolerated(0.1) benign(0.262) TCGA-EE-A3AE-06 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.50 deleterious(0.03) probably_damaging(0.98) TCGA-EE-A3AE-06 2 31572667 31572667 C T XDH Missense_Mutation p.D952N 0.46 tolerated(0.07) probably_damaging(0.984) TCGA-EE-A3AE-06 2 31572668 31572668 C T XDH Silent p.G951G 0.45 TCGA-EE-A3AE-06 2 31593227 31593227 C T XDH Silent p.K658K 0.33 TCGA-EE-A3AE-06 2 33745023 33745023 C T RASGRP3 Nonsense_Mutation p.R60* 0.57 TCGA-EE-A3AE-06 2 37873102 37873102 G A CDC42EP3 Missense_Mutation p.P210L 0.33 tolerated(0.76) benign(0.008) TCGA-EE-A3AE-06 2 40656544 40656544 C T SLC8A1 Missense_Mutation p.G293R 0.39 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A3AE-06 2 43452266 43452266 G A ZFP36L2 Missense_Mutation p.S226L 0.58 tolerated(0.45) possibly_damaging(0.602) TCGA-EE-A3AE-06 2 44071673 44071673 G A ABCG8 Missense_Mutation p.E31K 0.53 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-EE-A3AE-06 2 46739392 46739392 G A ATP6V1E2 Silent p.P153P 0.36 TCGA-EE-A3AE-06 2 69049768 69049768 G A ARHGAP25 Silent p.R499R 0.50 TCGA-EE-A3AE-06 2 69409764 69409764 C T ANTXR1 Missense_Mutation p.S442F 0.44 deleterious(0.04) possibly_damaging(0.82) TCGA-EE-A3AE-06 2 71044191 71044191 T G CLEC4F Missense_Mutation p.K108Q 0.47 tolerated(0.05) possibly_damaging(0.614) TCGA-EE-A3AE-06 2 71577112 71577112 C T ZNF638 Missense_Mutation p.S343L 0.40 deleterious(0.03) benign(0.146) TCGA-EE-A3AE-06 2 73677116 73677116 C T ALMS1 Silent p.F1153F 0.42 TCGA-EE-A3AE-06 2 74480220 74480220 C T SLC4A5 Silent p.R383R 0.34 TCGA-EE-A3AE-06 2 74666798 74666798 G T RTKN Intron 0.58 TCGA-EE-A3AE-06 2 75720527 75720527 C T EVA1A Silent p.R98R 0.55 TCGA-EE-A3AE-06 2 79253891 79253891 C T REG3G Silent p.G43G 0.67 TCGA-EE-A3AE-06 2 79255032 79255032 C T REG3G Missense_Mutation p.H145Y 0.44 tolerated(1) benign(0.001) TCGA-EE-A3AE-06 2 79386514 79386514 G A REG3A Silent p.A6A 0.30 TCGA-EE-A3AE-06 2 85578056 85578056 G A RETSAT Silent p.P148P 0.49 TCGA-EE-A3AE-06 2 86459843 86459843 G T REEP1 Missense_Mutation p.P174H 0.47 tolerated(0.12) probably_damaging(0.953) TCGA-EE-A3AE-06 2 88383879 88383879 A G SMYD1 Missense_Mutation p.K61R 0.51 tolerated(0.08) benign(0.016) TCGA-EE-A3AE-06 2 89292011 89292011 C A IGKV1-8 Missense_Mutation p.G88W 0.33 deleterious(0) possibly_damaging(0.856) TCGA-EE-A3AE-06 2 95940267 95940267 G T PROM2 5'UTR 0.19 TCGA-EE-A3AE-06 2 97363282 97363282 G A FER1L5 RNA 0.40 TCGA-EE-A3AE-06 2 99012478 99012478 C T CNGA3 Missense_Mutation p.S282F 0.33 deleterious(0.03) benign(0.192) TCGA-EE-A3AE-06 3 102196543 102196543 C T ZPLD1 3'UTR 0.50 TCGA-EE-A3AE-06 3 10400474 10400474 G A ATP2B2 Silent p.F679F 0.60 TCGA-EE-A3AE-06 3 10413714 10413714 G A ATP2B2 Silent p.L480L 0.55 TCGA-EE-A3AE-06 3 107097110 107097110 C T CCDC54 Nonsense_Mutation p.Q226* 0.56 TCGA-EE-A3AE-06 3 108147366 108147366 G A MYH15 Silent p.T1245T 0.57 TCGA-EE-A3AE-06 3 108565935 108565935 A G TRAT1 Missense_Mutation p.E58G 0.21 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A3AE-06 3 108724101 108724101 G A MORC1 Missense_Mutation p.S610L 0.56 deleterious(0.04) benign(0.01) TCGA-EE-A3AE-06 3 108819338 108819338 G A MORC1 Silent p.I80I 0.58 TCGA-EE-A3AE-06 3 111312335 111312335 G A ZBED2 3'UTR 0.58 TCGA-EE-A3AE-06 3 111312336 111312336 G A ZBED2 3'UTR 0.58 TCGA-EE-A3AE-06 3 11348436 11348436 C T ATG7 Missense_Mutation p.R79C 0.58 tolerated(0.15) benign(0.339) TCGA-EE-A3AE-06 3 114069633 114069633 G A ZBTB20 Missense_Mutation p.S431F 0.34 deleterious(0) probably_damaging(0.962) TCGA-EE-A3AE-06 3 121712464 121712464 G A ILDR1 Nonsense_Mutation p.Q378* 0.51 TCGA-EE-A3AE-06 3 121825305 121825305 G A CD86 Missense_Mutation p.E221K 0.60 tolerated(0.41) benign(0.05) TCGA-EE-A3AE-06 3 122003859 122003859 G A CASR Missense_Mutation p.E1030K 0.28 tolerated_low_confidence(0.08) benign(0.001) TCGA-EE-A3AE-06 3 122123196 122123196 C T FAM162A Silent p.I83I 0.67 TCGA-EE-A3AE-06 3 122271276 122271276 G A PARP9 Missense_Mutation p.P401S 0.18 tolerated(0.79) benign(0.007) TCGA-EE-A3AE-06 3 123166728 123166728 G A ADCY5 Missense_Mutation p.P222L 0.11 tolerated(0.12) benign(0.003) TCGA-EE-A3AE-06 3 123383085 123383085 C T MYLK Missense_Mutation p.M1284I 0.18 tolerated(1) benign(0.002) TCGA-EE-A3AE-06 3 123946845 123946845 C T KALRN Missense_Mutation p.R26W 0.25 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-EE-A3AE-06 3 123987692 123987692 G A KALRN Missense_Mutation p.E185K 0.60 deleterious(0.03) benign(0.432) TCGA-EE-A3AE-06 3 124053238 124053238 G A KALRN Missense_Mutation p.E513K 0.17 tolerated(0.15) benign(0.444) TCGA-EE-A3AE-06 3 124181382 124181382 G A KALRN Nonsense_Mutation p.W1309* 0.20 TCGA-EE-A3AE-06 3 124210176 124210176 G A KALRN Missense_Mutation p.E1530K 0.11 deleterious(0) benign(0.185) TCGA-EE-A3AE-06 3 124632432 124632432 T C MUC13 Missense_Mutation p.N353S 0.22 tolerated(0.08) benign(0.024) TCGA-EE-A3AE-06 3 124802869 124802869 G A SLC12A8 Silent p.I670I 0.79 TCGA-EE-A3AE-06 3 125271248 125271248 G T OSBPL11 Silent p.S477S 0.16 TCGA-EE-A3AE-06 3 126180810 126180810 G A ZXDC Silent p.P565P 0.26 TCGA-EE-A3AE-06 3 126291345 126291345 C T TXNRD3NB Silent p.L14L 0.22 TCGA-EE-A3AE-06 3 127703143 127703143 C T KBTBD12 3'UTR 0.22 TCGA-EE-A3AE-06 3 128181695 128181695 C T DNAJB8 Missense_Mutation p.G132R 0.10 tolerated(0.11) benign(0.017) TCGA-EE-A3AE-06 3 13417926 13417926 G A NUP210 Silent p.I386I 0.09 TCGA-EE-A3AE-06 3 136710872 136710872 C T IL20RB Silent p.F208F 0.19 TCGA-EE-A3AE-06 3 141011793 141011793 C T ACPL2 Missense_Mutation p.P397S 0.12 tolerated(0.1) probably_damaging(0.98) TCGA-EE-A3AE-06 3 141328281 141328281 C T RASA2 Nonsense_Mutation p.Q749* 0.53 TCGA-EE-A3AE-06 3 142212099 142212099 G A ATR Missense_Mutation p.P1985S 0.21 tolerated(0.23) benign(0.126) TCGA-EE-A3AE-06 3 142280112 142280112 G A ATR Missense_Mutation p.S441F 0.18 tolerated_low_confidence(0.7) benign(0) TCGA-EE-A3AE-06 3 142681009 142681009 G A PAQR9 3'UTR 0.20 TCGA-EE-A3AE-06 3 143513907 143513907 G A SLC9A9 Nonsense_Mutation p.Q157* 0.25 TCGA-EE-A3AE-06 3 145918825 145918825 C T PLSCR4 Missense_Mutation p.E132K 0.54 deleterious(0.01) possibly_damaging(0.796) TCGA-EE-A3AE-06 3 14862658 14862658 G A FGD5 Missense_Mutation p.E694K 0.57 deleterious(0.01) benign(0.424) TCGA-EE-A3AE-06 3 150264576 150264576 C T EIF2A 5'UTR 0.23 TCGA-EE-A3AE-06 3 150911370 150911370 G A MED12L Missense_Mutation p.E688K 0.19 tolerated(0.5) benign(0.061) TCGA-EE-A3AE-06 3 151166802 151166802 G A IGSF10 Nonsense_Mutation p.Q323* 0.21 TCGA-EE-A3AE-06 3 154898230 154898230 G A MME Silent p.K745K 0.13 TCGA-EE-A3AE-06 3 15516452 15516452 G A COLQ Missense_Mutation p.P179S 0.13 deleterious(0.01) unknown(0) TCGA-EE-A3AE-06 3 155311920 155311920 G A PLCH1 Missense_Mutation p.H82Y 0.66 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A3AE-06 3 156175270 156175270 A G KCNAB1 Missense_Mutation p.Y129C 0.60 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 3 159605519 159605519 C T IQCJ-SCHIP1 Missense_Mutation p.S416F 0.54 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 3 160037581 160037581 A T IFT80 Missense_Mutation p.F308L 0.20 tolerated(0.18) benign(0.015) TCGA-EE-A3AE-06 3 161221586 161221586 C T OTOL1 Silent p.L430L 0.18 TCGA-EE-A3AE-06 3 161221723 161221723 C T OTOL1 Missense_Mutation p.S476L 0.70 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-EE-A3AE-06 3 16254145 16254145 G A GALNT15 Missense_Mutation p.D423N 0.29 tolerated(0.5) benign(0.004) TCGA-EE-A3AE-06 3 164727096 164727096 C T SI Missense_Mutation p.E1384K 0.41 tolerated(1) benign(0.102) TCGA-EE-A3AE-06 3 167170733 167170733 C T SERPINI2 Missense_Mutation p.G319R 0.79 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 3 167196728 167196728 C T WDR49 Missense_Mutation p.E678K 0.48 deleterious(0.02) benign(0.093) TCGA-EE-A3AE-06 3 169099133 169099133 C T MECOM Missense_Mutation p.D97N 0.25 deleterious(0.02) benign(0.365) TCGA-EE-A3AE-06 3 169557725 169557725 C T LRRC31 3'UTR 0.75 TCGA-EE-A3AE-06 3 169664277 169664277 G A RP11-379K17.4 RNA 0.61 TCGA-EE-A3AE-06 3 170078455 170078455 C T SKIL Silent p.S112S 0.57 TCGA-EE-A3AE-06 3 170198832 170198832 G A SLC7A14 Silent p.I413I 0.08 TCGA-EE-A3AE-06 3 179131545 179131545 A G GNB4 Missense_Mutation p.L152S 0.25 deleterious(0.03) benign(0.311) TCGA-EE-A3AE-06 3 182871618 182871618 G A LAMP3 Missense_Mutation p.T204I 0.63 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AE-06 3 183209742 183209742 C T KLHL6 Silent p.R613R 0.69 TCGA-EE-A3AE-06 3 184100658 184100658 C T CHRD Missense_Mutation p.P333S 0.65 tolerated(0.07) benign(0.209) TCGA-EE-A3AE-06 3 184104473 184104473 G A CHRD Missense_Mutation p.G709E 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 3 18436089 18436089 C T SATB1 Missense_Mutation p.M357I 0.58 tolerated(0.42) benign(0) TCGA-EE-A3AE-06 3 186338622 186338622 C T AHSG Missense_Mutation p.P336L 0.56 tolerated(0.53) benign(0.013) TCGA-EE-A3AE-06 3 186395302 186395302 G A HRG Missense_Mutation p.G403E 0.44 tolerated(0.22) probably_damaging(0.931) TCGA-EE-A3AE-06 3 187386814 187386814 G A SST 3'UTR 0.21 TCGA-EE-A3AE-06 3 193023421 193023421 C T ATP13A5 Missense_Mutation p.E869K 0.62 deleterious(0.01) possibly_damaging(0.802) TCGA-EE-A3AE-06 3 194118166 194118166 C T GP5 Silent p.P282P 0.16 TCGA-EE-A3AE-06 3 195515992 195515992 C T MUC4 Missense_Mutation p.G820E 0.14 unknown(0) TCGA-EE-A3AE-06 3 195605370 195605370 G A TNK2 Missense_Mutation p.H433Y 0.59 tolerated(0.94) benign(0.148) TCGA-EE-A3AE-06 3 195955025 195955025 G A SLC51A Missense_Mutation p.M134I 0.18 tolerated(0.15) benign(0.024) TCGA-EE-A3AE-06 3 197427641 197427641 G A KIAA0226 Silent p.S368S 0.20 TCGA-EE-A3AE-06 3 20168949 20168949 C G KAT2B Missense_Mutation p.R553G 0.17 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AE-06 3 21606174 21606174 C T ZNF385D Missense_Mutation p.M56I 0.17 deleterious(0) benign(0.001) TCGA-EE-A3AE-06 3 3081776 3081776 G A CNTN4 Missense_Mutation p.R740Q 0.69 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AE-06 3 3144438 3144438 C T IL5RA Nonsense_Mutation p.W50* 0.67 TCGA-EE-A3AE-06 3 33481295 33481295 C T UBP1 Missense_Mutation p.V16M 0.22 tolerated(0.08) possibly_damaging(0.841) TCGA-EE-A3AE-06 3 33481296 33481296 C T UBP1 Silent p.L15L 0.22 TCGA-EE-A3AE-06 3 35778694 35778694 G A ARPP21 Missense_Mutation p.G461E 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AE-06 3 36778777 36778777 G A DCLK3 Silent p.I458I 0.22 TCGA-EE-A3AE-06 3 36779465 36779465 G A DCLK3 Missense_Mutation p.P229L 0.29 tolerated(0.67) benign(0.002) TCGA-EE-A3AE-06 3 36873700 36873700 G A TRANK1 Silent p.F2414F 0.20 TCGA-EE-A3AE-06 3 36888715 36888715 G A TRANK1 Silent p.L1626L 0.30 TCGA-EE-A3AE-06 3 37055956 37055956 C T MLH1 Silent p.T237T 0.20 TCGA-EE-A3AE-06 3 37067129 37067129 C T MLH1 Missense_Mutation p.T347I 0.38 deleterious(0.02) benign(0.091) TCGA-EE-A3AE-06 3 37379168 37379168 A T GOLGA4 Silent p.A2128A 0.50 TCGA-EE-A3AE-06 3 37379169 37379169 C T GOLGA4 Nonsense_Mutation p.Q2129* 0.50 TCGA-EE-A3AE-06 3 38048182 38048182 C T VILL Silent p.A816A 0.60 TCGA-EE-A3AE-06 3 38048183 38048183 C T VILL Missense_Mutation p.R817C 0.61 tolerated(0.07) benign(0.022) TCGA-EE-A3AE-06 3 38595922 38595922 G A SCN5A Missense_Mutation p.P1554L 0.23 tolerated(0.12) benign(0.015) TCGA-EE-A3AE-06 3 38770123 38770123 C T SCN10A Nonsense_Mutation p.W850* 0.23 TCGA-EE-A3AE-06 3 38770130 38770130 C T SCN10A Missense_Mutation p.G848E 0.61 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AE-06 3 38770244 38770244 C T SCN10A Missense_Mutation p.G810E 0.55 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AE-06 3 38835425 38835425 T G SCN10A Missense_Mutation p.K26T 0.16 deleterious(0.04) probably_damaging(0.91) TCGA-EE-A3AE-06 3 38945371 38945371 C T SCN11A Silent p.L609L 0.73 TCGA-EE-A3AE-06 3 38945589 38945589 C T SCN11A Missense_Mutation p.E537K 0.14 deleterious(0) probably_damaging(0.957) TCGA-EE-A3AE-06 3 39162532 39162532 C T TTC21A Silent p.I323I 0.29 TCGA-EE-A3AE-06 3 39307825 39307825 C T CX3CR1 Missense_Mutation p.S91N 0.60 tolerated(0.2) possibly_damaging(0.894) TCGA-EE-A3AE-06 3 42905986 42905986 C T ACKR2 5'UTR 0.72 TCGA-EE-A3AE-06 3 42906050 42906050 A T ACKR2 Missense_Mutation p.N19I 0.25 deleterious(0.03) probably_damaging(0.926) TCGA-EE-A3AE-06 3 42950362 42950362 G A ZNF662 Missense_Mutation p.G98R 0.17 tolerated(0.25) possibly_damaging(0.877) TCGA-EE-A3AE-06 3 42956688 42956688 C T ZNF662 Missense_Mutation p.L401F 0.17 tolerated(0.24) probably_damaging(0.999) TCGA-EE-A3AE-06 3 43602842 43602842 G A ANO10 Missense_Mutation p.S449F 0.29 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A3AE-06 3 44492971 44492971 G A ZNF445 Missense_Mutation p.P145S 0.67 tolerated(0.16) possibly_damaging(0.641) TCGA-EE-A3AE-06 3 44929234 44929234 C T TGM4 Missense_Mutation p.P83S 0.42 tolerated(0.77) benign(0.002) TCGA-EE-A3AE-06 3 44932094 44932094 G A TGM4 Splice_Site p.X101_splice 0.71 TCGA-EE-A3AE-06 3 45153707 45153707 C T CDCP1 Missense_Mutation p.G175R 0.72 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 3 45812803 45812803 G A SLC6A20 Missense_Mutation p.L281F 0.17 deleterious(0.04) benign(0.075) TCGA-EE-A3AE-06 3 46014622 46014622 G A FYCO1 Missense_Mutation p.S166L 0.52 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AE-06 3 46306776 46306776 C T CCR3 Silent p.L64L 0.16 TCGA-EE-A3AE-06 3 47957454 47957454 G A MAP4 Silent p.F621F 0.69 TCGA-EE-A3AE-06 3 48621170 48621170 G A COL7A1 Missense_Mutation p.P1441L 0.63 unknown(0) TCGA-EE-A3AE-06 3 49138111 49138111 G A QARS Intron 0.19 TCGA-EE-A3AE-06 3 49161987 49161987 G A LAMB2 Silent p.C1056C 0.26 TCGA-EE-A3AE-06 3 50293704 50293704 C T GNAI2 Missense_Mutation p.T182I 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 3 50293705 50293705 C T GNAI2 Silent p.T182T 0.59 TCGA-EE-A3AE-06 3 50513569 50513569 C T CACNA2D2 Missense_Mutation p.G90S 0.29 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 3 51251606 51251606 G A DOCK3 Missense_Mutation p.E394K 0.19 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AE-06 3 51864696 51864696 C T IQCF3 Missense_Mutation p.A115V 0.30 deleterious(0.04) benign(0.005) TCGA-EE-A3AE-06 3 52391976 52391976 C T DNAH1 Missense_Mutation p.A1348V 0.24 probably_damaging(0.968) TCGA-EE-A3AE-06 3 52469966 52469966 G A SEMA3G Missense_Mutation p.R668C 0.59 deleterious(0.01) benign(0.028) TCGA-EE-A3AE-06 3 52529459 52529459 C T STAB1 Silent p.L10L 0.17 TCGA-EE-A3AE-06 3 52551961 52551961 C T STAB1 Missense_Mutation p.T1568I 0.25 deleterious(0) possibly_damaging(0.461) TCGA-EE-A3AE-06 3 54798283 54798283 G A CACNA2D3 Missense_Mutation p.E429K 0.17 deleterious(0) possibly_damaging(0.84) TCGA-EE-A3AE-06 3 54952821 54952821 G A LRTM1 Missense_Mutation p.P235S 0.21 tolerated(0.46) benign(0.002) TCGA-EE-A3AE-06 3 58134480 58134480 G A FLNB Missense_Mutation p.E2029K 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AE-06 3 58190528 58190528 G A DNASE1L3 Missense_Mutation p.P134L 0.18 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AE-06 3 61734583 61734583 C T PTPRG Silent p.H39H 0.47 TCGA-EE-A3AE-06 3 67053899 67053899 C T KBTBD8 Nonsense_Mutation p.R170* 0.21 TCGA-EE-A3AE-06 3 68593691 68593691 C T FAM19A1 3'UTR 0.50 TCGA-EE-A3AE-06 3 69168224 69168224 G A LMOD3 Missense_Mutation p.P428S 0.55 deleterious(0.04) probably_damaging(0.992) TCGA-EE-A3AE-06 3 69168225 69168225 G A LMOD3 Silent p.P427P 0.54 TCGA-EE-A3AE-06 3 69230588 69230588 A T FRMD4B Silent p.V771V 0.22 TCGA-EE-A3AE-06 3 69230589 69230589 A C FRMD4B Missense_Mutation p.V771G 0.25 tolerated(0.33) benign(0) TCGA-EE-A3AE-06 3 7620651 7620651 G A GRM7 Silent p.Q686Q 0.57 TCGA-EE-A3AE-06 3 86116019 86116019 C T CADM2 3'Flank 0.67 TCGA-EE-A3AE-06 3 87310438 87310438 C T POU1F1 Missense_Mutation p.R243Q 0.59 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 3 88040303 88040303 G A HTR1F Missense_Mutation p.R135K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 3 88040393 88040393 G A HTR1F Missense_Mutation p.G165E 0.50 tolerated(0.33) benign(0.099) TCGA-EE-A3AE-06 3 8809153 8809153 C T OXTR Missense_Mutation p.A241T 0.21 tolerated(0.49) benign(0.038) TCGA-EE-A3AE-06 3 9594365 9594365 G A LHFPL4 5'UTR 0.59 TCGA-EE-A3AE-06 3 97185321 97185321 C T EPHA6 Intron 0.46 TCGA-EE-A3AE-06 3 9785916 9785916 C T BRPF1 Missense_Mutation p.P882S 0.21 tolerated(0.19) benign(0.085) TCGA-EE-A3AE-06 3 98073149 98073149 C T OR5K4 Missense_Mutation p.A151V 0.15 tolerated(0.15) benign(0.03) TCGA-EE-A3AE-06 3 98507296 98507296 C T ST3GAL6 Missense_Mutation p.P249S 0.10 tolerated(0.08) possibly_damaging(0.817) TCGA-EE-A3AE-06 3 98507297 98507297 C T ST3GAL6 Missense_Mutation p.P249L 0.10 tolerated(0.07) probably_damaging(0.987) TCGA-EE-A3AE-06 3 98507298 98507298 C A ST3GAL6 Silent p.P249P 0.11 TCGA-EE-A3AE-06 4 100200661 100200661 G A ADH1A Missense_Mutation p.S342L 0.50 tolerated(0.2) benign(0.039) TCGA-EE-A3AE-06 4 100235009 100235009 G A ADH1B Missense_Mutation p.S266L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 4 100434217 100434217 G A C4orf17 5'UTR 0.48 TCGA-EE-A3AE-06 4 101947023 101947023 C T PPP3CA Silent p.%3D 0.26 TCGA-EE-A3AE-06 4 110687870 110687870 C T CFI Silent p.E56E 0.43 TCGA-EE-A3AE-06 4 113107979 113107979 G A C4orf32 Missense_Mutation p.R95Q 0.53 tolerated(0.14) benign(0.359) TCGA-EE-A3AE-06 4 113468529 113468529 G A C4orf21 Missense_Mutation p.P1837L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 4 11400816 11400816 G A HS3ST1 Missense_Mutation p.R272W 0.61 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 4 11400917 11400917 G A HS3ST1 Missense_Mutation p.S238L 0.50 tolerated(0.07) benign(0.393) TCGA-EE-A3AE-06 4 122854038 122854038 G A TRPC3 Silent p.I125I 0.26 TCGA-EE-A3AE-06 4 123176012 123176012 C T KIAA1109 Missense_Mutation p.P2043S 0.65 probably_damaging(0.998) TCGA-EE-A3AE-06 4 123249499 123249499 T C KIAA1109 Missense_Mutation p.Y3746H 0.37 possibly_damaging(0.498) TCGA-EE-A3AE-06 4 126372220 126372220 A G FAT4 Missense_Mutation p.K3350R 0.52 benign(0.008) TCGA-EE-A3AE-06 4 126400924 126400924 C T FAT4 Missense_Mutation p.R4168C 0.36 benign(0.238) TCGA-EE-A3AE-06 4 126411568 126411568 G A FAT4 Missense_Mutation p.G4531R 0.24 benign(0.018) TCGA-EE-A3AE-06 4 126412679 126412679 G A FAT4 Missense_Mutation p.G4901E 0.48 benign(0.358) TCGA-EE-A3AE-06 4 129809847 129809847 G A SCLT1 Missense_Mutation p.S664L 0.21 deleterious(0) benign(0.392) TCGA-EE-A3AE-06 4 13602303 13602303 G A BOD1L1 Missense_Mutation p.S2074F 0.55 probably_damaging(0.969) TCGA-EE-A3AE-06 4 138451032 138451032 C T PCDH18 Silent p.R737R 0.48 TCGA-EE-A3AE-06 4 140599715 140599715 T C MGST2 Missense_Mutation p.V26A 0.82 deleterious(0.02) possibly_damaging(0.865) TCGA-EE-A3AE-06 4 145032548 145032548 C T GYPA Silent p.%3D 0.36 TCGA-EE-A3AE-06 4 146031360 146031360 C T ABCE1 Nonsense_Mutation p.Q171* 0.55 TCGA-EE-A3AE-06 4 148993274 148993274 C T ARHGAP10 3'UTR 0.28 TCGA-EE-A3AE-06 4 153897264 153897264 C G FHDC1 Missense_Mutation p.R941G 0.50 deleterious(0) possibly_damaging(0.775) TCGA-EE-A3AE-06 4 156135319 156135319 C T NPY2R Silent p.I76I 0.56 TCGA-EE-A3AE-06 4 156135798 156135798 C T NPY2R Missense_Mutation p.S236L 0.54 tolerated(0.06) possibly_damaging(0.629) TCGA-EE-A3AE-06 4 156135872 156135872 C T NPY2R Nonsense_Mutation p.Q261* 0.20 TCGA-EE-A3AE-06 4 156632249 156632249 G A GUCY1A3 Missense_Mutation p.R311K 0.18 tolerated(0.26) benign(0.026) TCGA-EE-A3AE-06 4 157732134 157732134 C T PDGFC Missense_Mutation p.G117E 0.41 tolerated(0.05) probably_damaging(0.953) TCGA-EE-A3AE-06 4 158091583 158091583 G A GLRB Splice_Site p.X400_splice 0.47 TCGA-EE-A3AE-06 4 158282238 158282238 G A GRIA2 Intron 0.31 TCGA-EE-A3AE-06 4 15937700 15937700 C T FGFBP1 Missense_Mutation p.V186M 0.54 tolerated(0.1) possibly_damaging(0.756) TCGA-EE-A3AE-06 4 162307361 162307361 C T FSTL5 Silent p.T694T 0.27 TCGA-EE-A3AE-06 4 162459346 162459346 A T FSTL5 Silent p.L428L 0.64 TCGA-EE-A3AE-06 4 164247320 164247320 G A NPY1R Silent p.F129F 0.62 TCGA-EE-A3AE-06 4 165890966 165890966 C T TRIM61 Silent p.R63R 0.29 TCGA-EE-A3AE-06 4 166929121 166929121 G A TLL1 Missense_Mutation p.E280K 0.23 tolerated(0.17) benign(0.005) TCGA-EE-A3AE-06 4 167655943 167655943 C T SPOCK3 3'UTR 0.63 TCGA-EE-A3AE-06 4 167675880 167675880 C T SPOCK3 Missense_Mutation p.R240K 0.38 tolerated(1) benign(0.062) TCGA-EE-A3AE-06 4 169158566 169158566 G A DDX60 Nonsense_Mutation p.Q1428* 0.75 TCGA-EE-A3AE-06 4 169315626 169315626 C T DDX60L Missense_Mutation p.G1267E 0.36 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A3AE-06 4 175897465 175897465 G A ADAM29 Silent p.R263R 0.52 TCGA-EE-A3AE-06 4 177608491 177608491 C T VEGFC Missense_Mutation p.R332Q 0.54 tolerated(0.89) possibly_damaging(0.489) TCGA-EE-A3AE-06 4 17805284 17805284 G A DCAF16 Missense_Mutation p.P161S 0.26 tolerated_low_confidence(0.57) probably_damaging(0.932) TCGA-EE-A3AE-06 4 183713753 183713753 C T TENM3 Silent p.V1976V 0.60 TCGA-EE-A3AE-06 4 183714623 183714623 G A TENM3 Silent p.S2266S 0.56 TCGA-EE-A3AE-06 4 184938369 184938369 C T STOX2 Missense_Mutation p.P905S 0.19 tolerated_low_confidence(0.07) benign(0.011) TCGA-EE-A3AE-06 4 186380141 186380141 A G CCDC110 Silent p.L534L 0.44 TCGA-EE-A3AE-06 4 186545288 186545288 G A SORBS2 Missense_Mutation p.P528L 0.30 tolerated(0.15) benign(0.165) TCGA-EE-A3AE-06 4 187455134 187455134 C T MTNR1A Silent p.L254L 0.52 TCGA-EE-A3AE-06 4 189022258 189022258 C T TRIML2 Silent p.A94A 0.50 TCGA-EE-A3AE-06 4 189022305 189022305 C T TRIML2 Missense_Mutation p.E79K 0.16 tolerated_low_confidence(0.25) benign(0.033) TCGA-EE-A3AE-06 4 20706352 20706352 C T PACRGL Missense_Mutation p.S41F 0.23 deleterious(0) benign(0.288) TCGA-EE-A3AE-06 4 22820495 22820495 C T GBA3 Silent p.A453A 0.43 TCGA-EE-A3AE-06 4 25823696 25823696 C T SEL1L3 Silent p.G404G 0.17 TCGA-EE-A3AE-06 4 3149759 3149759 C T HTT Missense_Mutation p.S1108L 0.47 benign(0.016) TCGA-EE-A3AE-06 4 36126533 36126533 G A ARAP2 Missense_Mutation p.P1233S 0.69 deleterious(0.03) probably_damaging(0.918) TCGA-EE-A3AE-06 4 39276558 39276558 G A WDR19 Silent p.K1232K 0.18 TCGA-EE-A3AE-06 4 3948523 3948523 C T FAM86EP Intron 0.33 TCGA-EE-A3AE-06 4 40121980 40121980 C T N4BP2 Missense_Mutation p.S750F 0.23 tolerated(0.72) benign(0.007) TCGA-EE-A3AE-06 4 40244964 40244964 C T RHOH 5'UTR 0.47 TCGA-EE-A3AE-06 4 40350969 40350969 G A CHRNA9 Missense_Mutation p.D146N 0.40 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AE-06 4 40351359 40351359 C T CHRNA9 Silent p.L276L 0.54 TCGA-EE-A3AE-06 4 40427897 40427897 C T RBM47 3'UTR 0.29 TCGA-EE-A3AE-06 4 41699297 41699297 G A LIMCH1 3'UTR 0.44 TCGA-EE-A3AE-06 4 41984085 41984085 C T DCAF4L1 Silent p.V92V 0.26 TCGA-EE-A3AE-06 4 42077787 42077787 T C SLC30A9 Missense_Mutation p.F511S 0.55 deleterious(0) benign(0.425) TCGA-EE-A3AE-06 4 42895374 42895374 G A GRXCR1 Missense_Mutation p.E31K 0.26 tolerated(0.08) probably_damaging(0.993) TCGA-EE-A3AE-06 4 42965092 42965092 C T GRXCR1 Nonsense_Mutation p.R190* 0.18 TCGA-EE-A3AE-06 4 48622756 48622756 G A FRYL Missense_Mutation p.P72S 0.21 deleterious(0) probably_damaging(0.938) TCGA-EE-A3AE-06 4 52943176 52943176 C T SPATA18 Silent p.T330T 0.45 TCGA-EE-A3AE-06 4 52945987 52945987 C T SPATA18 Silent p.F419F 0.24 TCGA-EE-A3AE-06 4 53773705 53773705 C T SCFD2 Silent p.E587E 0.35 TCGA-EE-A3AE-06 4 55155011 55155011 A C PDGFRA Missense_Mutation p.N907T 0.46 deleterious(0) probably_damaging(0.957) TCGA-EE-A3AE-06 4 55964319 55964319 C T KDR Missense_Mutation p.D832N 0.19 deleterious(0) probably_damaging(0.963) TCGA-EE-A3AE-06 4 66361136 66361136 C T EPHA5 Missense_Mutation p.E346K 0.24 tolerated(0.46) benign(0.057) TCGA-EE-A3AE-06 4 68424559 68424559 C T STAP1 Missense_Mutation p.P11L 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 4 70346610 70346610 C T UGT2B4 Missense_Mutation p.M443I 0.26 deleterious(0.03) benign(0.017) TCGA-EE-A3AE-06 4 70918837 70918837 C T HTN1 Missense_Mutation p.S15F 0.50 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-EE-A3AE-06 4 71024129 71024129 C T C4orf40 Missense_Mutation p.R54C 0.34 deleterious(0.04) benign(0.441) TCGA-EE-A3AE-06 4 71472009 71472009 C T AMBN Silent p.F302F 0.42 TCGA-EE-A3AE-06 4 71472046 71472046 G A AMBN Missense_Mutation p.G315S 0.52 tolerated(0.09) benign(0.024) TCGA-EE-A3AE-06 4 73944492 73944492 G A ANKRD17 Silent p.V2425V 0.38 TCGA-EE-A3AE-06 4 74019668 74019668 T C ANKRD17 Missense_Mutation p.E388G 0.52 probably_damaging(1) TCGA-EE-A3AE-06 4 75312457 75312457 G A AREG Missense_Mutation p.E90K 0.22 deleterious(0.01) possibly_damaging(0.81) TCGA-EE-A3AE-06 4 75482212 75482212 G A AREGB Missense_Mutation p.E90K 0.47 deleterious(0.01) possibly_damaging(0.81) TCGA-EE-A3AE-06 4 76794280 76794280 C T PPEF2 Silent p.K502K 0.36 TCGA-EE-A3AE-06 4 79369291 79369291 A T FRAS1 Missense_Mutation p.D2032V 0.47 probably_damaging(0.972) TCGA-EE-A3AE-06 4 79396729 79396729 G A FRAS1 Missense_Mutation p.G2607E 0.49 possibly_damaging(0.651) TCGA-EE-A3AE-06 4 79786837 79786837 C T BMP2K Silent p.V398V 0.19 TCGA-EE-A3AE-06 4 80328862 80328862 G A GK2 Nonsense_Mutation p.Q165* 0.25 TCGA-EE-A3AE-06 4 82013576 82013576 C T PRKG2 Silent p.L719L 0.33 TCGA-EE-A3AE-06 4 8271918 8271918 G A HTRA3 Missense_Mutation p.E75K 0.46 deleterious(0.04) possibly_damaging(0.611) TCGA-EE-A3AE-06 4 85562043 85562043 G A CDS1 Missense_Mutation p.R311Q 0.51 tolerated(0.21) benign(0.028) TCGA-EE-A3AE-06 4 875793 875793 G A GAK Silent p.S521S 0.20 TCGA-EE-A3AE-06 4 89052264 89052264 C T ABCG2 Silent p.R160R 0.49 TCGA-EE-A3AE-06 4 94411870 94411870 T A GRID2 Missense_Mutation p.S647T 0.39 tolerated(0.17) possibly_damaging(0.781) TCGA-EE-A3AE-06 4 96256594 96256594 G A UNC5C Missense_Mutation p.H105Y 0.25 deleterious(0) probably_damaging(0.943) TCGA-EE-A3AE-06 4 9922133 9922133 C T SLC2A9 Missense_Mutation p.S293N 0.40 tolerated(0.18) benign(0.033) TCGA-EE-A3AE-06 5 101748833 101748833 C T SLCO6A1 Missense_Mutation p.G496E 0.56 deleterious(0.03) probably_damaging(0.924) TCGA-EE-A3AE-06 5 101834348 101834348 C T SLCO6A1 Silent p.R67R 0.48 TCGA-EE-A3AE-06 5 102509584 102509584 C T PPIP5K2 Missense_Mutation p.P813S 0.55 deleterious(0) possibly_damaging(0.882) TCGA-EE-A3AE-06 5 11022918 11022918 C T CTNND2 Missense_Mutation p.E988K 0.58 deleterious(0.01) benign(0.156) TCGA-EE-A3AE-06 5 111519789 111519789 C T EPB41L4A Missense_Mutation p.E516K 0.42 tolerated(0.25) probably_damaging(0.939) TCGA-EE-A3AE-06 5 112228530 112228530 G A ZRSR1 Silent p.G398G 0.26 TCGA-EE-A3AE-06 5 121786241 121786241 C T SNCAIP Missense_Mutation p.P567S 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A3AE-06 5 122725653 122725653 A G CEP120 Missense_Mutation p.L407S 0.22 tolerated(0.1) probably_damaging(0.938) TCGA-EE-A3AE-06 5 129037238 129037238 G A ADAMTS19 Missense_Mutation p.E1032K 0.55 deleterious(0.01) possibly_damaging(0.5) TCGA-EE-A3AE-06 5 131607089 131607089 C T PDLIM4 Silent p.P200P 0.50 TCGA-EE-A3AE-06 5 135602050 135602050 T C TRPC7 Silent p.L401L 0.48 TCGA-EE-A3AE-06 5 13717604 13717604 C T DNAH5 Silent p.V4175V 0.43 TCGA-EE-A3AE-06 5 13737604 13737604 C T DNAH5 Missense_Mutation p.E3738K 0.19 possibly_damaging(0.621) TCGA-EE-A3AE-06 5 13763005 13763005 G A DNAH5 Silent p.F3369F 0.52 TCGA-EE-A3AE-06 5 137681191 137681191 C T FAM53C Missense_Mutation p.R272C 0.53 deleterious(0) probably_damaging(0.942) TCGA-EE-A3AE-06 5 137727227 137727227 C T KDM3B Missense_Mutation p.P636S 0.29 tolerated_low_confidence(0.06) benign(0.388) TCGA-EE-A3AE-06 5 13886082 13886082 C T DNAH5 Missense_Mutation p.E912K 0.27 benign(0) TCGA-EE-A3AE-06 5 13901535 13901535 C T DNAH5 Silent p.K626K 0.61 TCGA-EE-A3AE-06 5 13914049 13914049 G A DNAH5 Missense_Mutation p.H447Y 0.30 benign(0.415) TCGA-EE-A3AE-06 5 139189270 139189270 C T PSD2 Missense_Mutation p.A82V 0.56 tolerated_low_confidence(0.17) benign(0.002) TCGA-EE-A3AE-06 5 139231229 139231229 C T NRG2 Missense_Mutation p.D578N 0.59 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AE-06 5 140167178 140167178 C T PCDHA1 Silent p.L435L 0.50 TCGA-EE-A3AE-06 5 140181907 140181907 C T PCDHA3 Silent p.S375S 0.45 TCGA-EE-A3AE-06 5 140208631 140208631 C T PCDHA6 Missense_Mutation p.L319F 0.30 tolerated_low_confidence(0.08) benign(0.025) TCGA-EE-A3AE-06 5 140250188 140250188 C T PCDHA11 Silent p.D500D 0.47 TCGA-EE-A3AE-06 5 140250436 140250436 C T PCDHA11 Missense_Mutation p.S583L 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.598) TCGA-EE-A3AE-06 5 140347604 140347604 C T PCDHAC2 Missense_Mutation p.S418F 0.51 tolerated(0.05) benign(0.143) TCGA-EE-A3AE-06 5 140431116 140431116 C T PCDHB1 Silent p.L21L 0.42 TCGA-EE-A3AE-06 5 140432760 140432760 G A PCDHB1 Missense_Mutation p.G569S 0.17 tolerated(0.48) benign(0.287) TCGA-EE-A3AE-06 5 140474384 140474384 G A PCDHB2 Missense_Mutation p.G4R 0.45 tolerated_low_confidence(0.17) benign(0.003) TCGA-EE-A3AE-06 5 140517377 140517377 C T PCDHB5 Silent p.A787A 0.56 TCGA-EE-A3AE-06 5 140517514 140517514 C T PCDHB5 3'UTR 0.50 TCGA-EE-A3AE-06 5 140530117 140530117 G A PCDHB6 Silent p.E93E 0.30 TCGA-EE-A3AE-06 5 140603128 140603128 C T PCDHB14 Silent p.F17F 0.42 TCGA-EE-A3AE-06 5 140603809 140603809 G A PCDHB14 Silent p.Q244Q 0.54 TCGA-EE-A3AE-06 5 140719102 140719102 G A PCDHGA2 Silent p.G188G 0.62 TCGA-EE-A3AE-06 5 140725157 140725157 C T PCDHGA3 Silent p.S519S 0.56 TCGA-EE-A3AE-06 5 140736244 140736244 G A PCDHGA4 Missense_Mutation p.E493K 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.63) TCGA-EE-A3AE-06 5 140783640 140783640 G A PCDHGA9 Missense_Mutation p.R374Q 0.51 tolerated_low_confidence(0.62) benign(0.048) TCGA-EE-A3AE-06 5 140784165 140784165 G A PCDHGA9 Missense_Mutation p.R549K 0.60 deleterious_low_confidence(0.01) benign(0.028) TCGA-EE-A3AE-06 5 140794693 140794693 C T PCDHGA10 Nonsense_Mutation p.Q651* 0.30 TCGA-EE-A3AE-06 5 1416266 1416266 G A SLC6A3 Silent p.F326F 0.55 TCGA-EE-A3AE-06 5 1432648 1432648 C T SLC6A3 Missense_Mutation p.G195D 0.37 tolerated(0.61) benign(0.003) TCGA-EE-A3AE-06 5 1432649 1432649 C T SLC6A3 Missense_Mutation p.G195S 0.36 tolerated(0.85) benign(0.003) TCGA-EE-A3AE-06 5 1443232 1443232 C T SLC6A3 Silent p.K27K 0.54 TCGA-EE-A3AE-06 5 145252194 145252194 A G GRXCR2 Splice_Site p.X112_splice 0.17 TCGA-EE-A3AE-06 5 145252455 145252455 G A GRXCR2 Missense_Mutation p.S26F 0.40 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AE-06 5 145442103 145442103 G A SH3RF2 Missense_Mutation p.E677K 0.55 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A3AE-06 5 147692014 147692014 C T SPINK7 5'UTR 0.40 TCGA-EE-A3AE-06 5 147692067 147692067 C T SPINK7 Silent p.L7L 0.37 TCGA-EE-A3AE-06 5 149278955 149278955 C T PDE6A Missense_Mutation p.D416N 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 5 149456918 149456918 G A CSF1R Silent p.F270F 0.51 TCGA-EE-A3AE-06 5 150138482 150138482 G A DCTN4 Missense_Mutation p.S25L 0.48 tolerated(0.06) benign(0.147) TCGA-EE-A3AE-06 5 150138553 150138553 C T DCTN4 Translation_Start_Site p.M1? 0.17 deleterious(0) probably_damaging(0.949) TCGA-EE-A3AE-06 5 150664188 150664188 C T SLC36A3 Missense_Mutation p.E306K 0.42 deleterious(0) probably_damaging(0.95) TCGA-EE-A3AE-06 5 153143996 153143996 C T GRIA1 Missense_Mutation p.S619F 0.30 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AE-06 5 156644894 156644894 C T ITK Missense_Mutation p.P158S 0.55 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AE-06 5 156890238 156890238 C T NIPAL4 Silent p.I120I 0.51 TCGA-EE-A3AE-06 5 156915364 156915364 C T ADAM19 Missense_Mutation p.G820E 0.58 tolerated(1) benign(0.128) TCGA-EE-A3AE-06 5 159781843 159781843 C T C1QTNF2 Missense_Mutation p.R104Q 0.56 tolerated(0.13) unknown(0) TCGA-EE-A3AE-06 5 160753448 160753448 C T GABRB2 Missense_Mutation p.R373Q 0.47 tolerated(0.59) benign(0.002) TCGA-EE-A3AE-06 5 167919667 167919667 C T RARS Missense_Mutation p.L62F 0.35 deleterious(0.04) benign(0.439) TCGA-EE-A3AE-06 5 170235689 170235689 C T GABRP Silent p.F255F 0.41 TCGA-EE-A3AE-06 5 170668103 170668103 C T RANBP17 Missense_Mutation p.A865V 0.48 tolerated(1) probably_damaging(0.985) TCGA-EE-A3AE-06 5 172517864 172517864 C T CREBRF Missense_Mutation p.H228Y 0.30 deleterious_low_confidence(0.01) benign(0.271) TCGA-EE-A3AE-06 5 176719085 176719085 T C NSD1 Missense_Mutation p.L2130P 0.57 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AE-06 5 176719086 176719086 C T NSD1 Silent p.L2130L 0.57 TCGA-EE-A3AE-06 5 177171961 177171961 C T FAM153A Missense_Mutation p.M12I 0.24 deleterious_low_confidence(0) benign(0.043) TCGA-EE-A3AE-06 5 177423014 177423014 C T PROP1 5'UTR 0.40 TCGA-EE-A3AE-06 5 180335740 180335740 G A BTNL8 Silent p.R68R 0.42 TCGA-EE-A3AE-06 5 19473502 19473502 G A CDH18 Nonsense_Mutation p.Q736* 0.41 TCGA-EE-A3AE-06 5 19483537 19483537 G A CDH18 Silent p.T585T 0.45 TCGA-EE-A3AE-06 5 21854813 21854813 C T CDH12 Missense_Mutation p.G205R 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 5 23522420 23522420 G A PRDM9 Silent p.R172R 0.43 TCGA-EE-A3AE-06 5 24488197 24488197 C T CDH10 Missense_Mutation p.E648K 0.33 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AE-06 5 31317550 31317550 G A CDH6 Silent p.L527L 0.41 TCGA-EE-A3AE-06 5 35084645 35084645 G A PRLR Silent p.I100I 0.33 TCGA-EE-A3AE-06 5 35771817 35771817 A C SPEF2 Missense_Mutation p.K1303T 0.48 deleterious(0.04) benign(0.116) TCGA-EE-A3AE-06 5 35954490 35954490 G A UGT3A1 Silent p.I462I 0.50 TCGA-EE-A3AE-06 5 36265061 36265061 C T RANBP3L Silent p.K185K 0.23 TCGA-EE-A3AE-06 5 37154076 37154076 G A C5orf42 Silent p.F2659F 0.49 TCGA-EE-A3AE-06 5 37337949 37337949 G A NUP155 Missense_Mutation p.P440S 0.43 deleterious(0.02) benign(0.11) TCGA-EE-A3AE-06 5 38352301 38352301 C T EGFLAM Missense_Mutation p.S138F 0.26 tolerated_low_confidence(0.56) benign(0.002) TCGA-EE-A3AE-06 5 38904469 38904469 C T OSMR Silent p.I383I 0.46 TCGA-EE-A3AE-06 5 39315978 39315978 C T C9 Missense_Mutation p.E257K 0.31 tolerated(0.46) benign(0) TCGA-EE-A3AE-06 5 40959697 40959697 G A C7 Missense_Mutation p.E546K 0.36 deleterious(0.02) possibly_damaging(0.453) TCGA-EE-A3AE-06 5 41000372 41000372 G A MROH2B Nonsense_Mutation p.Q1478* 0.41 TCGA-EE-A3AE-06 5 41009507 41009507 C T MROH2B Missense_Mutation p.D1099N 0.30 tolerated(0.36) benign(0.159) TCGA-EE-A3AE-06 5 41012771 41012771 C T MROH2B Missense_Mutation p.E1017K 0.24 tolerated(0.23) benign(0.159) TCGA-EE-A3AE-06 5 41054920 41054920 G A MROH2B Silent p.I352I 0.58 TCGA-EE-A3AE-06 5 41061705 41061705 C T MROH2B Missense_Mutation p.M194I 0.34 tolerated(0.29) benign(0.078) TCGA-EE-A3AE-06 5 41159246 41159246 C T C6 Silent p.G598G 0.58 TCGA-EE-A3AE-06 5 41176647 41176647 G A C6 Silent p.F366F 0.51 TCGA-EE-A3AE-06 5 41176678 41176678 C T C6 Missense_Mutation p.R356Q 0.33 tolerated(0.17) benign(0.316) TCGA-EE-A3AE-06 5 45645412 45645412 C T HCN1 Missense_Mutation p.G242R 0.48 tolerated(0.57) possibly_damaging(0.736) TCGA-EE-A3AE-06 5 52160651 52160651 C T ITGA1 Missense_Mutation p.S117L 0.44 tolerated(0.19) benign(0.184) TCGA-EE-A3AE-06 5 63894214 63894214 C T RGS7BP Missense_Mutation p.L212F 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3AE-06 5 64595871 64595871 C T ADAMTS6 Silent p.A437A 0.51 TCGA-EE-A3AE-06 5 64747382 64747382 G A ADAMTS6 Silent p.S331S 0.31 TCGA-EE-A3AE-06 5 66396273 66396273 C T MAST4 Missense_Mutation p.S308F 0.41 probably_damaging(0.998) TCGA-EE-A3AE-06 5 68684932 68684932 C T RAD17 Silent p.I333I 0.48 TCGA-EE-A3AE-06 5 70308571 70308571 G A NAIP Missense_Mutation p.R58C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AE-06 5 71496137 71496137 G A MAP1B Missense_Mutation p.E2319K 0.45 benign(0.277) TCGA-EE-A3AE-06 5 75594628 75594628 G A SV2C Silent p.G504G 0.20 TCGA-EE-A3AE-06 5 76171174 76171174 C T S100Z 5'UTR 0.49 TCGA-EE-A3AE-06 5 79030492 79030492 C T CMYA5 Silent p.S1968S 0.21 TCGA-EE-A3AE-06 5 79498762 79498762 G A SERINC5 Silent p.V46V 0.33 TCGA-EE-A3AE-06 5 80503116 80503116 G C RASGRF2 Missense_Mutation p.A1007P 0.20 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AE-06 5 82836397 82836397 G A VCAN Silent p.R2525R 0.38 TCGA-EE-A3AE-06 5 82836398 82836398 G A VCAN Missense_Mutation p.E2526K 0.35 tolerated(0.77) benign(0.05) TCGA-EE-A3AE-06 5 83433158 83433158 C T EDIL3 Missense_Mutation p.E124K 0.34 tolerated(0.88) probably_damaging(0.911) TCGA-EE-A3AE-06 5 89815203 89815203 G A LYSMD3 Silent p.T118T 0.49 TCGA-EE-A3AE-06 5 89815204 89815204 G A LYSMD3 Missense_Mutation p.T118I 0.46 deleterious(0) possibly_damaging(0.642) TCGA-EE-A3AE-06 5 90012448 90012448 G A GPR98 Missense_Mutation p.V3117I 0.32 possibly_damaging(0.785) TCGA-EE-A3AE-06 5 9066614 9066614 G A SEMA5A Missense_Mutation p.P740S 0.50 deleterious(0.04) possibly_damaging(0.543) TCGA-EE-A3AE-06 6 100395829 100395829 G A MCHR2 Silent p.V67V 0.95 TCGA-EE-A3AE-06 6 107361206 107361206 C T C6orf203 Missense_Mutation p.S86F 0.85 tolerated(0.14) benign(0.032) TCGA-EE-A3AE-06 6 107854792 107854792 G A SOBP Missense_Mutation p.R184Q 0.84 deleterious(0.01) possibly_damaging(0.496) TCGA-EE-A3AE-06 6 111689225 111689225 A C REV3L Missense_Mutation p.I1922M 0.78 deleterious(0.02) benign(0.039) TCGA-EE-A3AE-06 6 117127829 117127829 G A GPRC6A Missense_Mutation p.P347S 0.59 tolerated(0.17) benign(0.159) TCGA-EE-A3AE-06 6 117248384 117248384 C T RFX6 Missense_Mutation p.H694Y 0.38 tolerated_low_confidence(0.69) benign(0.065) TCGA-EE-A3AE-06 6 128134279 128134279 C T THEMIS Missense_Mutation p.E503K 0.90 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 6 130762807 130762807 C T TMEM200A Missense_Mutation p.R414W 0.78 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AE-06 6 131971266 131971266 T C ENPP3 Missense_Mutation p.F85S 0.41 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AE-06 6 138601288 138601288 C T KIAA1244 Silent p.I816I 0.97 TCGA-EE-A3AE-06 6 13978059 13978059 C T RNF182 Missense_Mutation p.H237Y 0.83 tolerated(0.07) possibly_damaging(0.854) TCGA-EE-A3AE-06 6 146254205 146254205 G A SHPRH Missense_Mutation p.H1034Y 0.29 tolerated(0.1) benign(0.106) TCGA-EE-A3AE-06 6 147830197 147830197 G A SAMD5 Missense_Mutation p.G45R 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 6 150342228 150342228 G A RAET1L Silent p.F148F 0.84 TCGA-EE-A3AE-06 6 152576061 152576061 C T SYNE1 Missense_Mutation p.R6475Q 0.81 probably_damaging(0.997) TCGA-EE-A3AE-06 6 155597436 155597436 G A CLDN20 Missense_Mutation p.D195N 0.85 tolerated(0.36) benign(0.009) TCGA-EE-A3AE-06 6 158483032 158483032 C T SYNJ2 Silent p.L321L 0.81 TCGA-EE-A3AE-06 6 160888606 160888606 G A LPAL2 RNA 0.61 TCGA-EE-A3AE-06 6 161152120 161152120 G A PLG Missense_Mutation p.D432N 0.85 deleterious(0.02) possibly_damaging(0.749) TCGA-EE-A3AE-06 6 166580940 166580940 T A T Missense_Mutation p.E47V 0.84 deleterious(0) possibly_damaging(0.464) TCGA-EE-A3AE-06 6 22569695 22569695 C T HDGFL1 5'Flank 0.56 TCGA-EE-A3AE-06 6 24781782 24781782 C T GMNN Silent p.V69V 0.88 TCGA-EE-A3AE-06 6 26156988 26156988 G A HIST1H1E Missense_Mutation p.G124S 0.83 tolerated(0.31) unknown(0) TCGA-EE-A3AE-06 6 26156989 26156989 G A HIST1H1E Missense_Mutation p.G124D 0.83 tolerated(0.07) unknown(0) TCGA-EE-A3AE-06 6 26426469 26426469 G A BTN2A3P Splice_Site 0.73 TCGA-EE-A3AE-06 6 28501821 28501821 G A GPX5 Nonsense_Mutation p.W181* 0.88 TCGA-EE-A3AE-06 6 29555766 29555766 C T OR2H2 Silent p.F15F 0.45 TCGA-EE-A3AE-06 6 30124729 30124729 C T TRIM10 Missense_Mutation p.M294I 0.36 tolerated(0.08) benign(0.007) TCGA-EE-A3AE-06 6 30520350 30520350 C T GNL1 Silent p.E331E 0.43 TCGA-EE-A3AE-06 6 30617572 30617572 C T C6orf136 Silent p.L285L 0.41 TCGA-EE-A3AE-06 6 30671501 30671501 G A MDC1 Missense_Mutation p.S1820L 0.80 tolerated(0.05) benign(0.006) TCGA-EE-A3AE-06 6 31748222 31748222 G A VARS Missense_Mutation p.S974F 0.83 tolerated(0.17) benign(0.001) TCGA-EE-A3AE-06 6 31913928 31913928 G A CFB 5'UTR 0.80 TCGA-EE-A3AE-06 6 31928255 31928255 T A SKIV2L Missense_Mutation p.L134H 0.46 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AE-06 6 32049308 32049308 G A RNA5SP206 5'Flank 0.82 TCGA-EE-A3AE-06 6 32261458 32261458 G A C6orf10 Missense_Mutation p.P331L 0.82 tolerated(0.07) benign(0.125) TCGA-EE-A3AE-06 6 33166144 33166144 G A RXRB Missense_Mutation p.P194L 0.79 tolerated(0.05) possibly_damaging(0.525) TCGA-EE-A3AE-06 6 33289050 33289050 G A DAXX Missense_Mutation p.P168S 0.35 tolerated(0.53) benign(0.014) TCGA-EE-A3AE-06 6 33289051 33289051 G A DAXX Silent p.D167D 0.35 TCGA-EE-A3AE-06 6 33372839 33372839 G A KIFC1 Missense_Mutation p.G323R 0.88 deleterious(0.04) probably_damaging(0.938) TCGA-EE-A3AE-06 6 33372840 33372840 G A KIFC1 Missense_Mutation p.G323E 0.88 tolerated(0.17) possibly_damaging(0.596) TCGA-EE-A3AE-06 6 33656171 33656171 C T ITPR3 Silent p.F2177F 0.81 TCGA-EE-A3AE-06 6 35943162 35943162 C T SLC26A8 Missense_Mutation p.G426E 0.84 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 6 36746699 36746699 C T CPNE5 Silent p.L188L 0.78 TCGA-EE-A3AE-06 6 36979536 36979536 G A FGD2 Missense_Mutation p.D145N 0.85 tolerated(0.07) possibly_damaging(0.805) TCGA-EE-A3AE-06 6 37450986 37450986 G A CCDC167 Silent p.L90L 0.81 TCGA-EE-A3AE-06 6 37620006 37620006 C T MDGA1 Missense_Mutation p.E365K 0.83 deleterious(0.02) possibly_damaging(0.87) TCGA-EE-A3AE-06 6 38890917 38890917 C T DNAH8 Silent p.I3365I 0.76 TCGA-EE-A3AE-06 6 38893853 38893853 G A DNAH8 Missense_Mutation p.G3445E 0.86 probably_damaging(1) TCGA-EE-A3AE-06 6 38917251 38917251 G A DNAH8 Nonsense_Mutation p.W3834* 0.78 TCGA-EE-A3AE-06 6 42637845 42637845 G A UBR2 Silent p.E1299E 0.85 TCGA-EE-A3AE-06 6 43214388 43214388 C T TTBK1 5'UTR 0.83 TCGA-EE-A3AE-06 6 43322940 43322940 G A ZNF318 Missense_Mutation p.P711L 0.43 probably_damaging(0.986) TCGA-EE-A3AE-06 6 54173324 54173324 G A TINAG 5'UTR 1.00 TCGA-EE-A3AE-06 6 70944604 70944604 C T COL9A1 Missense_Mutation p.G718R 0.86 probably_damaging(0.997) TCGA-EE-A3AE-06 6 71004057 71004057 G A COL9A1 Missense_Mutation p.S170L 0.88 unknown(0) TCGA-EE-A3AE-06 6 7585853 7585853 G A DSP Silent p.K2786K 0.77 TCGA-EE-A3AE-06 6 7586077 7586077 C T DSP Missense_Mutation p.S2861F 0.82 possibly_damaging(0.735) TCGA-EE-A3AE-06 6 76640707 76640707 C T IMPG1 Missense_Mutation p.E736K 0.86 tolerated(0.45) benign(0.007) TCGA-EE-A3AE-06 6 88853950 88853950 G A CNR1 Silent p.I348I 0.82 TCGA-EE-A3AE-06 7 100085872 100085872 C T NYAP1 Silent p.F176F 0.59 TCGA-EE-A3AE-06 7 100153312 100153312 C T AGFG2 Silent p.L277L 0.65 TCGA-EE-A3AE-06 7 100187615 100187615 C T FBXO24 Missense_Mutation p.P57S 0.66 tolerated_low_confidence(0.09) possibly_damaging(0.641) TCGA-EE-A3AE-06 7 100238391 100238391 G A TFR2 Missense_Mutation p.H131Y 0.12 tolerated(0.28) benign(0.081) TCGA-EE-A3AE-06 7 100377269 100377269 C T ZAN Silent p.F2172F 1.00 TCGA-EE-A3AE-06 7 100484782 100484782 C T SRRT Missense_Mutation p.R646W 0.13 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 7 100676630 100676630 G A MUC17 Missense_Mutation p.E645K 0.73 possibly_damaging(0.78) TCGA-EE-A3AE-06 7 100683198 100683198 C T MUC17 Missense_Mutation p.P2834L 0.58 unknown(0) TCGA-EE-A3AE-06 7 100817804 100817804 C T NAT16 Silent p.V95V 0.58 TCGA-EE-A3AE-06 7 101844895 101844895 C T CUX1 Missense_Mutation p.A784V 0.29 tolerated(0.1) unknown(0) TCGA-EE-A3AE-06 7 102040026 102040026 C T PRKRIP1 Silent p.F79F 0.20 TCGA-EE-A3AE-06 7 102518011 102518011 C T FBXL13 Missense_Mutation p.R513Q 0.68 tolerated(0.29) benign(0.26) TCGA-EE-A3AE-06 7 102574369 102574369 G A LRRC17 Silent p.V3V 0.80 TCGA-EE-A3AE-06 7 102575032 102575032 C T LRRC17 Silent p.P224P 0.57 TCGA-EE-A3AE-06 7 107431549 107431549 C T SLC26A3 Missense_Mutation p.E172K 0.16 tolerated(0.26) benign(0.001) TCGA-EE-A3AE-06 7 107738880 107738880 C T LAMB4 Missense_Mutation p.G443E 0.33 deleterious(0) probably_damaging(0.958) TCGA-EE-A3AE-06 7 111976201 111976201 C T ZNF277 Missense_Mutation p.R282W 0.20 deleterious(0) possibly_damaging(0.462) TCGA-EE-A3AE-06 7 11485935 11485935 C T THSD7A Silent p.K939K 0.71 TCGA-EE-A3AE-06 7 116414937 116414937 C T MET Nonsense_Mutation p.Q1029* 0.18 TCGA-EE-A3AE-06 7 120591178 120591178 C T ING3 Intron 0.64 TCGA-EE-A3AE-06 7 120591179 120591179 C T ING3 Intron 0.61 TCGA-EE-A3AE-06 7 120767240 120767240 T A CPED1 Missense_Mutation p.F411I 0.19 tolerated(0.07) benign(0.097) TCGA-EE-A3AE-06 7 121985671 121985671 C T CADPS2 Missense_Mutation p.R1190Q 0.09 deleterious(0) probably_damaging(0.922) TCGA-EE-A3AE-06 7 128409143 128409143 C T CALU Silent p.I298I 0.77 TCGA-EE-A3AE-06 7 128413859 128413859 G A OPN1SW Silent p.S257S 0.66 TCGA-EE-A3AE-06 7 128486097 128486097 G A FLNC Missense_Mutation p.A1282T 0.65 tolerated(0.31) benign(0.003) TCGA-EE-A3AE-06 7 128486806 128486806 G A FLNC Missense_Mutation p.G1379S 0.72 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 7 128486888 128486888 C T FLNC Missense_Mutation p.T1406I 0.11 deleterious(0) benign(0.099) TCGA-EE-A3AE-06 7 130020348 130020348 C T CPA1 5'UTR 0.20 TCGA-EE-A3AE-06 7 134849432 134849433 - G TMEM140 Frame_Shift_Ins p.L82Pfs*28 0.14 TCGA-EE-A3AE-06 7 134896318 134896318 G A WDR91 5'Flank 0.63 TCGA-EE-A3AE-06 7 135661864 135661864 G A MTPN 5'UTR 0.60 TCGA-EE-A3AE-06 7 141754605 141754605 C T MGAM Missense_Mutation p.P1071S 0.55 deleterious(0.04) benign(0.042) TCGA-EE-A3AE-06 7 141754606 141754606 C T MGAM Missense_Mutation p.P1071L 0.54 deleterious(0.02) benign(0.073) TCGA-EE-A3AE-06 7 141764221 141764221 C T MGAM Silent p.T1461T 0.47 TCGA-EE-A3AE-06 7 141765190 141765190 C T MGAM Missense_Mutation p.P1514S 0.29 deleterious(0.01) possibly_damaging(0.732) TCGA-EE-A3AE-06 7 141765191 141765191 C T MGAM Missense_Mutation p.P1514L 0.29 deleterious(0) probably_damaging(0.965) TCGA-EE-A3AE-06 7 142001220 142001220 G A TRBV2 Silent p.E71E 0.35 TCGA-EE-A3AE-06 7 142045333 142045333 C T TRBV4-2 5'UTR 0.30 TCGA-EE-A3AE-06 7 142099653 142099653 G A TRBV7-8 Missense_Mutation p.S50F 0.24 tolerated(0.69) benign(0.003) TCGA-EE-A3AE-06 7 142104191 142104191 C T TRBV6-9 Missense_Mutation p.D92N 0.24 tolerated(1) benign(0.002) TCGA-EE-A3AE-06 7 142111472 142111472 G A TRBV5-7 Silent p.F88F 0.62 TCGA-EE-A3AE-06 7 142149191 142149191 G A TRBV5-5 Missense_Mutation p.P27L 0.54 deleterious(0.01) possibly_damaging(0.907) TCGA-EE-A3AE-06 7 142180749 142180749 C T TRBV6-5 Missense_Mutation p.S37N 0.08 tolerated(0.55) benign(0.029) TCGA-EE-A3AE-06 7 142206597 142206597 G A TRBV10-2 Silent p.S86S 0.61 TCGA-EE-A3AE-06 7 142423572 142423572 G A TRBV27 Silent p.K76K 0.69 TCGA-EE-A3AE-06 7 142564680 142564680 C T EPHB6 Missense_Mutation p.S535F 0.65 tolerated(0.26) benign(0.139) TCGA-EE-A3AE-06 7 142573565 142573565 G C TRPV6 Silent p.S285S 0.16 TCGA-EE-A3AE-06 7 142723785 142723785 C T OR9A2 Nonsense_Mutation p.W145* 0.57 TCGA-EE-A3AE-06 7 142723786 142723786 C T OR9A2 Nonsense_Mutation p.W145* 0.59 TCGA-EE-A3AE-06 7 142960654 142960654 C T GSTK1 Silent p.S16S 0.14 TCGA-EE-A3AE-06 7 143054461 143054461 C T FAM131B Missense_Mutation p.M174I 0.73 tolerated(0.13) probably_damaging(0.981) TCGA-EE-A3AE-06 7 143095447 143095447 C T EPHA1 Silent p.A477A 0.64 TCGA-EE-A3AE-06 7 143573547 143573547 G A FAM115A Missense_Mutation p.S52F 0.53 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 7 143826566 143826566 C T OR2A14 Missense_Mutation p.R121C 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AE-06 7 144099034 144099034 C T NOBOX Missense_Mutation p.D74N 0.12 tolerated_low_confidence(0.75) benign(0.001) TCGA-EE-A3AE-06 7 148106498 148106498 C T CNTNAP2 Missense_Mutation p.P1244L 0.70 tolerated(0.14) benign(0.002) TCGA-EE-A3AE-06 7 149467625 149467625 C T ZNF467 Missense_Mutation p.E19K 0.67 deleterious(0.02) benign(0.008) TCGA-EE-A3AE-06 7 149480348 149480348 C T SSPO RNA 0.30 TCGA-EE-A3AE-06 7 149506205 149506205 G A SSPO RNA 0.28 TCGA-EE-A3AE-06 7 150174220 150174220 G A GIMAP8 Silent p.G450G 0.41 TCGA-EE-A3AE-06 7 150437980 150437980 G A GIMAP5 Missense_Mutation p.G3E 0.14 tolerated(0.12) benign(0.221) TCGA-EE-A3AE-06 7 150439912 150439912 C T GIMAP5 Silent p.L229L 0.16 TCGA-EE-A3AE-06 7 150883911 150883911 G A ASB10 Missense_Mutation p.R103C 0.71 deleterious(0.02) benign(0.056) TCGA-EE-A3AE-06 7 1542610 1542610 C A INTS1 Silent p.L92L 0.66 TCGA-EE-A3AE-06 7 157388004 157388004 C T PTPRN2 Missense_Mutation p.D808N 0.80 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 7 158334179 158334179 C T PTPRN2 Intron 0.72 TCGA-EE-A3AE-06 7 18067130 18067130 G A PRPS1L1 Silent p.F92F 0.63 TCGA-EE-A3AE-06 7 20739678 20739678 C T ABCB5 Intron 0.33 TCGA-EE-A3AE-06 7 20768058 20768058 G A ABCB5 Missense_Mutation p.M949I 0.64 tolerated(0.07) benign(0.012) TCGA-EE-A3AE-06 7 23810696 23810696 G A STK31 Missense_Mutation p.E596K 0.08 deleterious(0.04) benign(0.15) TCGA-EE-A3AE-06 7 2976739 2976739 C T CARD11 Missense_Mutation p.E425K 0.20 tolerated(0.06) possibly_damaging(0.57) TCGA-EE-A3AE-06 7 2979511 2979511 C T CARD11 Missense_Mutation p.E246K 0.21 tolerated(0.29) probably_damaging(0.927) TCGA-EE-A3AE-06 7 30706899 30706899 C T CRHR2 Missense_Mutation p.G114E 0.62 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AE-06 7 30963580 30963580 T C AQP1 3'UTR 0.86 TCGA-EE-A3AE-06 7 31735228 31735228 C T PPP1R17 Silent p.F76F 0.20 TCGA-EE-A3AE-06 7 34698054 34698054 C T NPSR1 Silent p.F10F 0.78 TCGA-EE-A3AE-06 7 34889218 34889218 G A NPSR1 Intron 0.32 TCGA-EE-A3AE-06 7 35288308 35288308 C T TBX20 Missense_Mutation p.D176N 0.69 deleterious(0) possibly_damaging(0.842) TCGA-EE-A3AE-06 7 37907333 37907333 G A NME8 Missense_Mutation p.M217I 0.59 deleterious(0) possibly_damaging(0.905) TCGA-EE-A3AE-06 7 38279703 38279703 C T TRGC2 Silent p.K164K 0.19 TCGA-EE-A3AE-06 7 42005576 42005576 G A GLI3 Missense_Mutation p.P1032L 0.22 deleterious(0.01) benign(0.231) TCGA-EE-A3AE-06 7 44579783 44579783 C T NPC1L1 Silent p.L71L 0.20 TCGA-EE-A3AE-06 7 47852763 47852763 G A PKD1L1 Silent p.G2434G 0.36 TCGA-EE-A3AE-06 7 4799000 4799000 C T FOXK1 Silent p.L490L 0.14 TCGA-EE-A3AE-06 7 48443295 48443295 G A ABCA13 Silent p.V3963V 0.16 TCGA-EE-A3AE-06 7 51096928 51096928 C T COBL Missense_Mutation p.G622E 0.21 tolerated(1) benign(0.006) TCGA-EE-A3AE-06 7 57522201 57522201 T A ZNF716 Missense_Mutation p.F25L 0.75 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A3AE-06 7 62752162 62752162 C T ZNF733P RNA 0.46 TCGA-EE-A3AE-06 7 66548429 66548429 C T TYW1 Silent p.N429N 0.18 TCGA-EE-A3AE-06 7 72658504 72658504 G A GTF2IRD2P1 RNA 0.24 TCGA-EE-A3AE-06 7 72744229 72744229 G A FKBP6 Silent p.P114P 0.60 TCGA-EE-A3AE-06 7 72863880 72863880 G A BAZ1B Silent p.S1240S 0.71 TCGA-EE-A3AE-06 7 73474513 73474513 C T ELN Silent p.L540L 0.16 TCGA-EE-A3AE-06 7 8124643 8124643 A C GLCCI1 Missense_Mutation p.M432L 0.67 tolerated(0.23) benign(0.007) TCGA-EE-A3AE-06 7 81335623 81335623 C T HGF Silent p.L579L 0.19 TCGA-EE-A3AE-06 7 82508685 82508685 C T PCLO Missense_Mutation p.G4541E 0.76 unknown(0) TCGA-EE-A3AE-06 7 82583596 82583596 C T PCLO Missense_Mutation p.E2225K 0.56 unknown(0) TCGA-EE-A3AE-06 7 82585122 82585122 C T PCLO Missense_Mutation p.G1716E 0.21 unknown(0) TCGA-EE-A3AE-06 7 82585473 82585473 C T PCLO Missense_Mutation p.G1599E 0.65 unknown(0) TCGA-EE-A3AE-06 7 82585844 82585844 C T PCLO Silent p.R1475R 0.13 TCGA-EE-A3AE-06 7 82764940 82764940 C T PCLO Missense_Mutation p.M642I 0.82 unknown(0) TCGA-EE-A3AE-06 7 83764194 83764194 C T SEMA3A Silent p.L62L 0.72 TCGA-EE-A3AE-06 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.24 tolerated(0.05) probably_damaging(0.997) TCGA-EE-A3AE-06 7 86479781 86479781 A G GRM3 Silent p.Q829Q 0.17 TCGA-EE-A3AE-06 7 92027171 92027171 C T ANKIB1 Nonsense_Mutation p.Q844* 0.59 TCGA-EE-A3AE-06 7 92848461 92848461 C T HEPACAM2 Missense_Mutation p.G128E 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-EE-A3AE-06 7 93519937 93519937 C T TFPI2 Silent p.E18E 0.13 TCGA-EE-A3AE-06 7 97822951 97822951 C T LMTK2 Silent p.T1058T 0.10 TCGA-EE-A3AE-06 7 97833287 97833287 C T LMTK2 Silent p.S1424S 0.17 TCGA-EE-A3AE-06 7 98257929 98257929 C T NPTX2 Silent p.L428L 0.75 TCGA-EE-A3AE-06 7 98449090 98449090 G A TMEM130 Silent p.I320I 0.15 TCGA-EE-A3AE-06 7 98507909 98507909 C T TRRAP Silent p.F527F 0.61 TCGA-EE-A3AE-06 7 98560040 98560040 C T TRRAP Silent p.S2266S 0.69 TCGA-EE-A3AE-06 7 98581822 98581822 C T TRRAP Silent p.I3047I 0.14 TCGA-EE-A3AE-06 7 99565973 99565973 C T AZGP1 Missense_Mutation p.D140N 0.63 tolerated(0.07) benign(0.01) TCGA-EE-A3AE-06 8 100990159 100990159 C T RGS22 Missense_Mutation p.E1169K 0.38 tolerated(0.29) benign(0.124) TCGA-EE-A3AE-06 8 101083624 101083624 C T RGS22 Missense_Mutation p.M189I 0.39 tolerated(0.05) benign(0.113) TCGA-EE-A3AE-06 8 101206344 101206344 C T SPAG1 Missense_Mutation p.T315I 0.62 tolerated(0.32) benign(0.001) TCGA-EE-A3AE-06 8 103220355 103220355 G A RRM2B 3'UTR 0.21 TCGA-EE-A3AE-06 8 10470224 10470224 G A RP1L1 Missense_Mutation p.P462S 0.22 benign(0.132) TCGA-EE-A3AE-06 8 105503740 105503740 C A LRP12 Missense_Mutation p.A581S 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AE-06 8 109796454 109796454 C T TMEM74 Missense_Mutation p.E292K 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AE-06 8 109796904 109796904 C T TMEM74 Missense_Mutation p.E142K 0.22 tolerated(0.74) benign(0.044) TCGA-EE-A3AE-06 8 110980234 110980234 T A KCNV1 3'UTR 0.33 TCGA-EE-A3AE-06 8 110985004 110985004 C T KCNV1 Silent p.R158R 0.55 TCGA-EE-A3AE-06 8 113254008 113254008 G A CSMD3 Missense_Mutation p.S3470F 0.62 tolerated(0.1) benign(0.035) TCGA-EE-A3AE-06 8 113326807 113326807 C T CSMD3 Missense_Mutation p.G2467E 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 8 113649119 113649119 C T CSMD3 Silent p.L1214L 0.60 TCGA-EE-A3AE-06 8 116616963 116616963 C T TRPS1 Silent p.Q411Q 0.42 TCGA-EE-A3AE-06 8 117778752 117778752 C T UTP23 5'UTR 0.46 TCGA-EE-A3AE-06 8 119391884 119391884 C T SAMD12 Silent p.Q126Q 0.24 TCGA-EE-A3AE-06 8 124448771 124448771 C T WDYHV1 Missense_Mutation p.P105S 0.21 deleterious(0) probably_damaging(0.949) TCGA-EE-A3AE-06 8 125072424 125072424 C A FER1L6 Missense_Mutation p.P960T 0.17 tolerated(0.23) possibly_damaging(0.806) TCGA-EE-A3AE-06 8 131127951 131127951 G A ASAP1 Missense_Mutation p.P699S 0.64 tolerated(0.63) probably_damaging(0.994) TCGA-EE-A3AE-06 8 133645158 133645158 C T LRRC6 Missense_Mutation p.D161N 0.33 tolerated(1) benign(0) TCGA-EE-A3AE-06 8 134274295 134274295 G A NDRG1 Silent p.P107P 0.68 TCGA-EE-A3AE-06 8 135669812 135669812 G A ZFAT Missense_Mutation p.T63I 0.60 tolerated(0.22) benign(0.015) TCGA-EE-A3AE-06 8 139793219 139793219 G A COL22A1 Missense_Mutation p.S534F 0.15 unknown(0) TCGA-EE-A3AE-06 8 140630522 140630522 C T KCNK9 Missense_Mutation p.M368I 0.57 tolerated(0.35) benign(0.001) TCGA-EE-A3AE-06 8 142487552 142487552 G A MROH5 3'UTR 0.64 TCGA-EE-A3AE-06 8 144657512 144657512 G A NAPRT1 Missense_Mutation p.S432F 0.60 tolerated(0.45) benign(0.008) TCGA-EE-A3AE-06 8 144804000 144804000 C T MAPK15 Missense_Mutation p.R470W 0.58 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AE-06 8 145753369 145753369 G A C8orf82 Intron 0.27 TCGA-EE-A3AE-06 8 17055909 17055909 C T ZDHHC2 Missense_Mutation p.H155Y 0.63 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AE-06 8 17169089 17169089 C T MTMR7 Silent p.R344R 0.19 TCGA-EE-A3AE-06 8 18658824 18658824 G A PSD3 Missense_Mutation p.S660F 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 8 18662313 18662313 C T PSD3 Missense_Mutation p.G577D 0.40 deleterious(0) probably_damaging(0.955) TCGA-EE-A3AE-06 8 20030599 20030599 C T SLC18A1 Silent p.E224E 1.00 TCGA-EE-A3AE-06 8 22138652 22138652 C T PIWIL2 Missense_Mutation p.S73F 0.48 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-EE-A3AE-06 8 22161634 22161634 C T PIWIL2 Missense_Mutation p.R428C 0.55 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AE-06 8 23049444 23049444 C T TNFRSF10A Silent p.T390T 0.59 TCGA-EE-A3AE-06 8 24324357 24324357 G A ADAM7 Silent p.V145V 0.21 TCGA-EE-A3AE-06 8 24324458 24324458 C T ADAM7 Missense_Mutation p.T179I 0.67 tolerated(0.47) benign(0.007) TCGA-EE-A3AE-06 8 24349525 24349525 G A ADAM7 Missense_Mutation p.G489E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 8 24775339 24775339 G A NEFM Silent p.P657P 0.63 TCGA-EE-A3AE-06 8 24775838 24775838 G A NEFM Missense_Mutation p.E824K 0.56 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-EE-A3AE-06 8 25747300 25747300 C T EBF2 Missense_Mutation p.G240E 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 8 27516431 27516431 C T SCARA3 Silent p.L248L 0.57 TCGA-EE-A3AE-06 8 28876303 28876303 C T HMBOX1 Missense_Mutation p.P242S 0.13 tolerated(0.09) probably_damaging(0.998) TCGA-EE-A3AE-06 8 30464637 30464637 G A GTF2E2 Missense_Mutation p.R194C 0.53 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AE-06 8 30948373 30948373 C T WRN Nonsense_Mutation p.Q582* 0.20 TCGA-EE-A3AE-06 8 32621491 32621491 C T NRG1 Silent p.F503F 0.64 TCGA-EE-A3AE-06 8 33449510 33449510 C T DUSP26 3'UTR 0.20 TCGA-EE-A3AE-06 8 3432491 3432491 G A CSMD1 Silent p.V440V 0.14 TCGA-EE-A3AE-06 8 38696040 38696040 C T TACC1 Missense_Mutation p.T631I 0.57 deleterious(0) benign(0.346) TCGA-EE-A3AE-06 8 38696041 38696041 C T TACC1 Silent p.T631T 0.58 TCGA-EE-A3AE-06 8 39792675 39792675 G A IDO2 5'UTR 0.18 TCGA-EE-A3AE-06 8 41530113 41530113 C T ANK1 Missense_Mutation p.E1660K 0.62 deleterious_low_confidence(0.01) benign(0.096) TCGA-EE-A3AE-06 8 48353101 48353101 C T SPIDR Missense_Mutation p.P365L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 8 51449367 51449367 C T SNTG1 Missense_Mutation p.R227W 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 8 52321411 52321411 G A PXDNL Missense_Mutation p.P925S 0.24 tolerated(0.42) benign(0.027) TCGA-EE-A3AE-06 8 53025792 53025792 C T ST18 Missense_Mutation p.S1037N 0.20 tolerated(0.64) benign(0.05) TCGA-EE-A3AE-06 8 53025793 53025793 T A ST18 Missense_Mutation p.S1037C 0.20 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AE-06 8 55534795 55534795 G A RP1 Missense_Mutation p.G245E 0.18 deleterious(0) possibly_damaging(0.811) TCGA-EE-A3AE-06 8 55541144 55541144 G A RP1 Missense_Mutation p.E1568K 0.38 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A3AE-06 8 55541965 55541965 C T RP1 Silent p.T1841T 0.71 TCGA-EE-A3AE-06 8 57218276 57218276 G A SDR16C5 Missense_Mutation p.P239L 0.49 deleterious(0.02) possibly_damaging(0.86) TCGA-EE-A3AE-06 8 61766932 61766932 C T CHD7 Silent p.V2262V 0.34 TCGA-EE-A3AE-06 8 68992747 68992747 G A PREX2 Missense_Mutation p.G571E 0.21 tolerated(0.12) probably_damaging(0.916) TCGA-EE-A3AE-06 8 69005939 69005939 T C PREX2 Missense_Mutation p.F784L 0.49 tolerated_low_confidence(0.58) probably_damaging(0.952) TCGA-EE-A3AE-06 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.38 tolerated(0.3) benign(0) TCGA-EE-A3AE-06 8 70591627 70591627 G A SLCO5A1 Silent p.I670I 0.58 TCGA-EE-A3AE-06 8 73848969 73848969 G A KCNB2 Missense_Mutation p.R460Q 0.26 tolerated(0.07) possibly_damaging(0.611) TCGA-EE-A3AE-06 8 74464404 74464404 G A STAU2 Missense_Mutation p.S458L 0.52 tolerated(0.15) benign(0.005) TCGA-EE-A3AE-06 8 82195725 82195725 C T FABP5 Silent p.T68T 0.61 TCGA-EE-A3AE-06 8 82195726 82195726 C T FABP5 Silent p.L69L 0.65 TCGA-EE-A3AE-06 8 88885264 88885264 C T DCAF4L2 Silent p.V312V 0.25 TCGA-EE-A3AE-06 8 95683804 95683804 C T ESRP1 Missense_Mutation p.P453S 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 8 95869077 95869077 C T INTS8 Nonsense_Mutation p.Q609* 0.63 TCGA-EE-A3AE-06 8 97247850 97247850 G A UQCRB 5'Flank 0.19 TCGA-EE-A3AE-06 8 99217347 99217347 G A NIPAL2 Silent p.F261F 0.13 TCGA-EE-A3AE-06 9 107298152 107298152 C T OR13C3 Missense_Mutation p.G315R 0.73 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3AE-06 9 107331676 107331676 C T OR13C8 Silent p.S76S 0.79 TCGA-EE-A3AE-06 9 107332173 107332173 C T OR13C8 Missense_Mutation p.S242L 0.73 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 9 109689948 109689948 C T ZNF462 Missense_Mutation p.P1252L 0.60 benign(0.057) TCGA-EE-A3AE-06 9 113212404 113212404 G A SVEP1 Silent p.V1346V 0.75 TCGA-EE-A3AE-06 9 119097323 119097323 G A PAPPA Missense_Mutation p.R1194K 0.81 tolerated(0.45) benign(0.067) TCGA-EE-A3AE-06 9 119187935 119187935 G A ASTN2 3'UTR 0.75 TCGA-EE-A3AE-06 9 125140266 125140266 G A PTGS1 Silent p.T61T 0.78 TCGA-EE-A3AE-06 9 125289031 125289031 G A OR1N1 Missense_Mutation p.P181L 0.87 deleterious(0.01) probably_damaging(0.913) TCGA-EE-A3AE-06 9 125315593 125315593 C T OR1N2 Missense_Mutation p.L49F 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AE-06 9 125316310 125316310 G A OR1N2 Missense_Mutation p.E288K 0.28 deleterious(0) benign(0.341) TCGA-EE-A3AE-06 9 125617595 125617595 G A RC3H2 Missense_Mutation p.P895S 0.57 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A3AE-06 9 126129490 126129490 G A CRB2 Missense_Mutation p.C265Y 0.90 deleterious(0) benign(0.035) TCGA-EE-A3AE-06 9 130480033 130480033 C T TTC16 Silent p.T136T 0.70 TCGA-EE-A3AE-06 9 130493071 130493071 G A TTC16 Missense_Mutation p.R670K 0.87 tolerated(0.27) benign(0.036) TCGA-EE-A3AE-06 9 130678751 130678751 G A ST6GALNAC4 5'UTR 0.84 TCGA-EE-A3AE-06 9 131038423 131038423 C T SWI5 5'Flank 0.78 TCGA-EE-A3AE-06 9 134321935 134321935 C T PRRC2B Missense_Mutation p.S254F 0.86 deleterious(0.01) possibly_damaging(0.602) TCGA-EE-A3AE-06 9 137708893 137708893 G A COL5A1 Missense_Mutation p.E1382K 0.78 unknown(0) TCGA-EE-A3AE-06 9 138378553 138378553 G A PPP1R26 Missense_Mutation p.E733K 0.88 deleterious(0.02) benign(0.035) TCGA-EE-A3AE-06 9 139393586 139393586 G A NOTCH1 Silent p.D2020D 0.84 TCGA-EE-A3AE-06 9 14819287 14819287 G A FREM1 Missense_Mutation p.P831S 0.73 tolerated(0.09) benign(0.006) TCGA-EE-A3AE-06 9 18777484 18777484 C T ADAMTSL1 Missense_Mutation p.S1086F 0.88 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AE-06 9 18892396 18892396 G A ADAMTSL1 Silent p.V1551V 0.93 TCGA-EE-A3AE-06 9 21239695 21239695 G A IFNA14 Silent p.L80L 0.82 TCGA-EE-A3AE-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 9 23704940 23704940 G A ELAVL2 Missense_Mutation p.R155C 0.76 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 9 35089444 35089444 G A PIGO Silent p.L1025L 0.50 TCGA-EE-A3AE-06 9 35616296 35616296 G A CD72 Intron 0.87 TCGA-EE-A3AE-06 9 35699391 35699391 G A TLN1 Missense_Mutation p.S2279F 0.71 deleterious(0.03) possibly_damaging(0.861) TCGA-EE-A3AE-06 9 37537208 37537208 C T FBXO10 Missense_Mutation p.G440R 0.91 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3AE-06 9 37955905 37955905 G A SHB Missense_Mutation p.P401S 0.49 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AE-06 9 39140595 39140595 C T CNTNAP3 Silent p.G599G 0.77 TCGA-EE-A3AE-06 9 4572216 4572216 G A SLC1A1 Missense_Mutation p.E199K 0.47 tolerated(0.12) benign(0.392) TCGA-EE-A3AE-06 9 4576755 4576755 C T SLC1A1 Silent p.I395I 0.23 TCGA-EE-A3AE-06 9 5185431 5185431 C T INSL6 Missense_Mutation p.E58K 0.76 tolerated(0.17) possibly_damaging(0.874) TCGA-EE-A3AE-06 9 6589236 6589236 G A GLDC Silent p.F513F 0.83 TCGA-EE-A3AE-06 9 70490010 70490010 G A CBWD5 Missense_Mutation p.P20L 0.21 deleterious(0.03) benign(0.065) TCGA-EE-A3AE-06 9 70490011 70490011 G A CBWD5 Missense_Mutation p.P20S 0.22 deleterious(0) possibly_damaging(0.844) TCGA-EE-A3AE-06 9 72471545 72471545 G A C9orf135 Silent p.K112K 0.85 TCGA-EE-A3AE-06 9 78803514 78803514 C T PCSK5 Missense_Mutation p.S768F 0.70 tolerated(0.69) benign(0.003) TCGA-EE-A3AE-06 9 79117361 79117361 C T GCNT1 Missense_Mutation p.L22F 0.67 tolerated(0.28) benign(0.01) TCGA-EE-A3AE-06 9 79318674 79318674 C T PRUNE2 Missense_Mutation p.D2619N 0.86 tolerated(0.12) benign(0.013) TCGA-EE-A3AE-06 9 79323993 79323993 G A PRUNE2 Missense_Mutation p.S1066F 0.48 deleterious(0) possibly_damaging(0.875) TCGA-EE-A3AE-06 9 8460539 8460539 G A PTPRD Silent p.P1249P 0.83 TCGA-EE-A3AE-06 9 86281332 86281332 G A UBQLN1 Missense_Mutation p.P422L 0.84 deleterious(0) possibly_damaging(0.713) TCGA-EE-A3AE-06 9 94486623 94486623 G A ROR2 Missense_Mutation p.P718L 0.69 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 9 95179207 95179207 C T OMD Missense_Mutation p.E212K 0.81 tolerated(1) benign(0.003) TCGA-EE-A3AE-06 9 95846965 95846965 C T SUSD3 Missense_Mutation p.P235L 0.75 tolerated_low_confidence(0.55) benign(0) TCGA-EE-A3AE-06 9 99691230 99691230 A C NUTM2G 5'Flank 0.47 TCGA-EE-A3AE-06 X 100242503 100242503 C T ARL13A Missense_Mutation p.S204F 0.25 tolerated(0.08) possibly_damaging(0.51) TCGA-EE-A3AE-06 X 100382643 100382643 C T CENPI Missense_Mutation p.H355Y 0.45 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AE-06 X 100625055 100625055 C T BTK Missense_Mutation p.E108K 0.37 tolerated(0.44) possibly_damaging(0.658) TCGA-EE-A3AE-06 X 100879865 100879865 A C ARMCX3 5'UTR 0.50 TCGA-EE-A3AE-06 X 101615492 101615492 G A NXF2B 3'UTR 0.23 TCGA-EE-A3AE-06 X 10174571 10174571 C T CLCN4 Silent p.S243S 0.39 TCGA-EE-A3AE-06 X 101818182 101818182 C T NXF4 RNA 0.29 TCGA-EE-A3AE-06 X 10181893 10181893 C T CLCN4 Silent p.F583F 0.48 TCGA-EE-A3AE-06 X 101910900 101910900 C T GPRASP1 Missense_Mutation p.P687S 0.26 tolerated(0.36) benign(0.005) TCGA-EE-A3AE-06 X 102931837 102931837 C T MORF4L2 Missense_Mutation p.G40E 0.30 tolerated(0.1) benign(0.029) TCGA-EE-A3AE-06 X 103495543 103495543 C T ESX1 Missense_Mutation p.R196Q 0.29 deleterious(0) possibly_damaging(0.664) TCGA-EE-A3AE-06 X 105280658 105280658 C T SERPINA7 Missense_Mutation p.G131E 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A3AE-06 X 106144120 106144120 G A RIPPLY1 Silent p.S105S 0.24 TCGA-EE-A3AE-06 X 106797636 106797636 C T FRMPD3 Missense_Mutation p.H255Y 0.40 deleterious(0.01) benign(0.119) TCGA-EE-A3AE-06 X 106819631 106819631 G A FRMPD3 Silent p.R494R 0.53 TCGA-EE-A3AE-06 X 106845016 106845016 C T FRMPD3 Silent p.F1282F 0.47 TCGA-EE-A3AE-06 X 107037559 107037559 G A NCBP2L Missense_Mutation p.E37K 0.56 tolerated(1) benign(0.006) TCGA-EE-A3AE-06 X 107316000 107316000 C T VSIG1 Missense_Mutation p.S205F 0.23 deleterious(0.03) possibly_damaging(0.808) TCGA-EE-A3AE-06 X 107413860 107413860 G T COL4A6 Missense_Mutation p.P1159T 0.43 possibly_damaging(0.906) TCGA-EE-A3AE-06 X 109697580 109697580 C T RGAG1 Silent p.G1245G 0.46 TCGA-EE-A3AE-06 X 110924436 110924436 G A ALG13 5'UTR 0.33 TCGA-EE-A3AE-06 X 110968239 110968239 G A ALG13 Missense_Mutation p.R560Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AE-06 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.50 deleterious(0) probably_damaging(0.945) TCGA-EE-A3AE-06 X 11316691 11316691 C T AMELX Silent p.P70P 0.27 TCGA-EE-A3AE-06 X 114141608 114141608 T A HTR2C Missense_Mutation p.L336H 0.46 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AE-06 X 114347894 114347894 C T LRCH2 Missense_Mutation p.R728K 0.27 tolerated(1) benign(0.017) TCGA-EE-A3AE-06 X 115303632 115303632 G A AGTR2 Silent p.L33L 0.38 TCGA-EE-A3AE-06 X 117043419 117043419 C T KLHL13 Missense_Mutation p.G407E 0.61 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AE-06 X 117960201 117960201 C T ZCCHC12 Missense_Mutation p.P332S 0.28 tolerated_low_confidence(0.12) benign(0.053) TCGA-EE-A3AE-06 X 117960250 117960250 C T ZCCHC12 Missense_Mutation p.S348L 0.32 deleterious(0.05) benign(0.048) TCGA-EE-A3AE-06 X 118219348 118219348 C T KIAA1210 Missense_Mutation p.E1616K 0.52 tolerated(0.92) benign(0) TCGA-EE-A3AE-06 X 119388970 119388970 C T ZBTB33 Missense_Mutation p.S567L 0.33 deleterious(0) probably_damaging(0.934) TCGA-EE-A3AE-06 X 122318472 122318472 G A GRIA3 Missense_Mutation p.G29R 0.30 deleterious(0.03) probably_damaging(0.953) TCGA-EE-A3AE-06 X 122758465 122758465 C T THOC2 Missense_Mutation p.R1038Q 0.20 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AE-06 X 123554567 123554567 G A TENM1 Missense_Mutation p.R1526C 0.47 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AE-06 X 127185268 127185268 G A ACTRT1 Silent p.L306L 0.48 TCGA-EE-A3AE-06 X 12736223 12736223 G A FRMPD4 Nonsense_Mutation p.W1093* 0.20 TCGA-EE-A3AE-06 X 129483303 129483303 C T SLC25A14 Silent p.F132F 0.39 TCGA-EE-A3AE-06 X 131234671 131234671 C T FRMD7 Missense_Mutation p.G44E 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 X 132161740 132161740 C T USP26 Missense_Mutation p.G170E 0.24 tolerated(0.58) benign(0) TCGA-EE-A3AE-06 X 132161988 132161988 G A USP26 Silent p.S87S 0.68 TCGA-EE-A3AE-06 X 135092720 135092720 C T SLC9A6 Missense_Mutation p.A340V 0.40 tolerated(0.6) benign(0.057) TCGA-EE-A3AE-06 X 135429029 135429029 C T GPR112 Missense_Mutation p.S1055F 0.55 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A3AE-06 X 135593648 135593648 G A HTATSF1 Missense_Mutation p.E582K 0.26 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-EE-A3AE-06 X 13636123 13636123 A T EGFL6 Missense_Mutation p.K351N 0.24 tolerated(0.2) possibly_damaging(0.56) TCGA-EE-A3AE-06 X 138878601 138878601 G A ATP11C Missense_Mutation p.S349L 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AE-06 X 139038338 139038338 G A CXorf66 Missense_Mutation p.P268L 0.54 tolerated(0.6) benign(0.002) TCGA-EE-A3AE-06 X 140969256 140969256 C T MAGEC3 Missense_Mutation p.L195F 0.54 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A3AE-06 X 141291746 141291746 G A MAGEC2 Missense_Mutation p.R10C 0.24 tolerated_low_confidence(0.05) benign(0.041) TCGA-EE-A3AE-06 X 142803920 142803920 G A SPANXN2 5'UTR 0.71 TCGA-EE-A3AE-06 X 142967418 142967418 C T UBE2NL Silent p.F72F 0.48 TCGA-EE-A3AE-06 X 147024747 147024747 G A FMR1 Missense_Mutation p.E458K 0.26 tolerated(0.17) benign(0.021) TCGA-EE-A3AE-06 X 148564354 148564354 C T IDS Missense_Mutation p.D315N 0.37 tolerated(0.4) benign(0.063) TCGA-EE-A3AE-06 X 148586701 148586701 G A IDS 5'UTR 0.41 TCGA-EE-A3AE-06 X 150869255 150869255 G A PRRG3 Missense_Mutation p.R149Q 0.49 tolerated(0.39) possibly_damaging(0.876) TCGA-EE-A3AE-06 X 151092154 151092154 G A MAGEA4 Silent p.K6K 0.50 TCGA-EE-A3AE-06 X 151128115 151128115 C T GABRE Intron 0.46 TCGA-EE-A3AE-06 X 151283563 151283563 G A RP11-1007I13.4 RNA 0.47 TCGA-EE-A3AE-06 X 151562929 151562929 C T GABRA3 Intron 0.31 TCGA-EE-A3AE-06 X 151870130 151870130 G A MAGEA6 Missense_Mutation p.G274S 0.46 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AE-06 X 151900008 151900008 C T MAGEA12 Missense_Mutation p.D265N 0.27 tolerated(0.09) benign(0.286) TCGA-EE-A3AE-06 X 151997134 151997134 G A CETN2 Silent p.L126L 0.33 TCGA-EE-A3AE-06 X 152159655 152159655 G A PNMA5 Missense_Mutation p.S163L 0.34 deleterious(0) possibly_damaging(0.875) TCGA-EE-A3AE-06 X 152226767 152226767 C T PNMA3 Missense_Mutation p.A452V 0.53 deleterious(0.05) probably_damaging(0.931) TCGA-EE-A3AE-06 X 153070124 153070124 C T PDZD4 Missense_Mutation p.D332N 0.28 tolerated(0.08) probably_damaging(1) TCGA-EE-A3AE-06 X 153556204 153556204 C T TKTL1 Silent p.I506I 0.52 TCGA-EE-A3AE-06 X 153556243 153556243 C T TKTL1 Silent p.I519I 0.40 TCGA-EE-A3AE-06 X 153640360 153640360 G T DNASE1L1 5'UTR 0.44 TCGA-EE-A3AE-06 X 153995569 153995569 C T DKC1 Silent p.P184P 0.28 TCGA-EE-A3AE-06 X 154157818 154157818 G A F8 Missense_Mutation p.P1416L 0.31 tolerated(0.1) benign(0.06) TCGA-EE-A3AE-06 X 154158173 154158173 C T F8 Missense_Mutation p.G1298S 0.37 tolerated(0.42) benign(0.039) TCGA-EE-A3AE-06 X 154159085 154159085 C T F8 Missense_Mutation p.G994R 0.44 deleterious(0) benign(0) TCGA-EE-A3AE-06 X 154493472 154493472 G A RAB39B Silent p.A34A 0.25 TCGA-EE-A3AE-06 X 154493633 154493633 C T RAB39B 5'UTR 0.19 TCGA-EE-A3AE-06 X 1584284 1584284 C T P2RY8 3'UTR 0.53 TCGA-EE-A3AE-06 X 18912299 18912299 A G PHKA2 Intron 0.22 TCGA-EE-A3AE-06 X 19379479 19379479 C T MAP3K15 Missense_Mutation p.D1279N 0.21 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AE-06 X 19398347 19398347 C T MAP3K15 Missense_Mutation p.G827E 0.55 deleterious(0.02) possibly_damaging(0.823) TCGA-EE-A3AE-06 X 19560173 19560173 G A SH3KBP1 Missense_Mutation p.P588S 0.25 tolerated(0.08) possibly_damaging(0.641) TCGA-EE-A3AE-06 X 21985355 21985355 C T SMS Nonsense_Mutation p.Q31* 0.22 TCGA-EE-A3AE-06 X 23398358 23398358 C T PTCHD1 Silent p.F334F 0.28 TCGA-EE-A3AE-06 X 24637202 24637202 C T PCYT1B Splice_Site p.X40_splice 0.28 TCGA-EE-A3AE-06 X 25033674 25033674 C T ARX Missense_Mutation p.E61K 0.30 deleterious(0.02) unknown(0) TCGA-EE-A3AE-06 X 30237154 30237154 C T MAGEB2 Missense_Mutation p.L153F 0.25 tolerated(0.06) possibly_damaging(0.539) TCGA-EE-A3AE-06 X 30269109 30269109 G A MAGEB1 Missense_Mutation p.E167K 0.64 deleterious(0.03) possibly_damaging(0.85) TCGA-EE-A3AE-06 X 30578350 30578350 A T CXorf21 Silent p.L41L 0.50 TCGA-EE-A3AE-06 X 31341755 31341755 C T DMD Missense_Mutation p.E3062K 0.17 benign(0.273) TCGA-EE-A3AE-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.55 deleterious(0.02) benign(0.166) TCGA-EE-A3AE-06 X 3239627 3239627 C T MXRA5 Missense_Mutation p.E1367K 0.63 tolerated(0.31) benign(0.005) TCGA-EE-A3AE-06 X 3240467 3240467 C T MXRA5 Missense_Mutation p.G1087S 0.77 tolerated(0.26) benign(0.022) TCGA-EE-A3AE-06 X 32472947 32472947 G A DMD Silent p.V1145V 0.22 TCGA-EE-A3AE-06 X 35820742 35820742 C T MAGEB16 Silent p.I143I 0.19 TCGA-EE-A3AE-06 X 35937879 35937879 G A CXorf22 5'UTR 0.40 TCGA-EE-A3AE-06 X 35984828 35984828 C T CXorf22 Silent p.I519I 0.41 TCGA-EE-A3AE-06 X 37029438 37029438 C T FAM47C Silent p.F985F 0.51 TCGA-EE-A3AE-06 X 37664342 37664342 G A CYBB Missense_Mutation p.G412E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 X 37664343 37664343 G A CYBB Silent p.G412G 0.36 TCGA-EE-A3AE-06 X 37984626 37984626 G A SYTL5 Nonsense_Mutation p.W661* 0.13 TCGA-EE-A3AE-06 X 38146214 38146214 C T RPGR Missense_Mutation p.D680N 0.24 unknown(0) TCGA-EE-A3AE-06 X 47272121 47272121 C T ZNF157 Missense_Mutation p.P217S 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3AE-06 X 47862011 47862011 C T ZNF182 5'UTR 0.17 TCGA-EE-A3AE-06 X 47979585 47979585 G A SSX6 RNA 0.58 TCGA-EE-A3AE-06 X 48372724 48372724 C T PORCN Silent p.G272G 0.18 TCGA-EE-A3AE-06 X 48433953 48433953 C T RBM3 Silent p.V36V 0.33 TCGA-EE-A3AE-06 X 48847122 48847122 G A GRIPAP1 Missense_Mutation p.S222F 0.17 possibly_damaging(0.735) TCGA-EE-A3AE-06 X 49079547 49079547 C T CACNA1F Missense_Mutation p.M653I 0.50 tolerated(0.53) benign(0.319) TCGA-EE-A3AE-06 X 51644984 51644984 C T MAGED1 Silent p.F821F 0.17 TCGA-EE-A3AE-06 X 53619423 53619423 C T HUWE1 Missense_Mutation p.D1303N 0.26 benign(0.013) TCGA-EE-A3AE-06 X 54044242 54044242 C T PHF8 Silent p.V138V 0.26 TCGA-EE-A3AE-06 X 54107815 54107815 G A FAM120C Missense_Mutation p.S973F 0.27 deleterious(0.04) possibly_damaging(0.568) TCGA-EE-A3AE-06 X 54337606 54337606 C T WNK3 Missense_Mutation p.G219E 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 X 54823447 54823447 G A ITIH6 Missense_Mutation p.P62L 0.25 deleterious(0.04) benign(0.271) TCGA-EE-A3AE-06 X 55047648 55047648 C T ALAS2 Missense_Mutation p.D159N 0.58 deleterious(0.02) possibly_damaging(0.657) TCGA-EE-A3AE-06 X 55103885 55103885 G A PAGE2B Missense_Mutation p.E83K 0.50 tolerated(0.22) benign(0.324) TCGA-EE-A3AE-06 X 55479045 55479045 C T MAGEH1 Missense_Mutation p.P80S 0.29 tolerated_low_confidence(0.05) benign(0.006) TCGA-EE-A3AE-06 X 55650474 55650474 C T FOXR2 Silent p.F110F 0.28 TCGA-EE-A3AE-06 X 5821359 5821359 C T NLGN4X Missense_Mutation p.V454M 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AE-06 X 5821665 5821665 C T NLGN4X Missense_Mutation p.D352N 0.23 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A3AE-06 X 63444318 63444318 C T ASB12 Missense_Mutation p.R285H 0.15 deleterious(0.02) benign(0.297) TCGA-EE-A3AE-06 X 63445469 63445469 A G ASB12 Missense_Mutation p.L21P 0.33 deleterious(0) probably_damaging(0.972) TCGA-EE-A3AE-06 X 65824340 65824340 C T EDA2R Missense_Mutation p.R92Q 0.25 tolerated(0.49) benign(0.005) TCGA-EE-A3AE-06 X 66931342 66931342 G T AR Missense_Mutation p.V662L 0.50 tolerated(0.34) benign(0.018) TCGA-EE-A3AE-06 X 67943917 67943917 G A STARD8 Missense_Mutation p.G1050S 0.35 deleterious(0.01) possibly_damaging(0.649) TCGA-EE-A3AE-06 X 69669258 69669258 A C DLG3 Missense_Mutation p.H153P 0.47 deleterious(0) benign(0.149) TCGA-EE-A3AE-06 X 70350002 70350002 C T MED12 Nonsense_Mutation p.R1329* 0.21 TCGA-EE-A3AE-06 X 70375108 70375108 G A NLGN3 Missense_Mutation p.G208R 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A3AE-06 X 70465569 70465569 C T ZMYM3 Missense_Mutation p.E937K 0.15 deleterious(0.01) benign(0.411) TCGA-EE-A3AE-06 X 70586131 70586131 C T TAF1 5'Flank 0.29 TCGA-EE-A3AE-06 X 71708808 71708808 C T HDAC8 Missense_Mutation p.E238K 0.36 tolerated(0.26) benign(0.042) TCGA-EE-A3AE-06 X 72223376 72223376 G A PABPC1L2B 5'UTR 0.35 TCGA-EE-A3AE-06 X 72299331 72299331 C T PABPC1L2A 5'UTR 0.38 TCGA-EE-A3AE-06 X 73042618 73042618 G A XIST RNA 0.35 TCGA-EE-A3AE-06 X 73960534 73960534 C T KIAA2022 Silent p.G1286G 0.42 TCGA-EE-A3AE-06 X 73962655 73962655 G A KIAA2022 Silent p.A579A 0.33 TCGA-EE-A3AE-06 X 73963266 73963266 C T KIAA2022 Missense_Mutation p.E376K 0.31 tolerated_low_confidence(0.09) probably_damaging(0.972) TCGA-EE-A3AE-06 X 74332752 74332752 C T ABCB7 Missense_Mutation p.G102E 0.36 tolerated(0.06) possibly_damaging(0.84) TCGA-EE-A3AE-06 X 74494158 74494158 C T UPRT Silent p.T23T 0.19 TCGA-EE-A3AE-06 X 77528539 77528539 G A CYSLTR1 Silent p.I235I 0.29 TCGA-EE-A3AE-06 X 77913701 77913701 C T ZCCHC5 Missense_Mutation p.A73T 0.33 tolerated(0.12) benign(0.03) TCGA-EE-A3AE-06 X 80532663 80532663 C T SH3BGRL Missense_Mutation p.R76C 0.23 tolerated(1) benign(0.002) TCGA-EE-A3AE-06 X 8538559 8538559 C T KAL1 Missense_Mutation p.R348Q 0.17 deleterious(0.02) benign(0.333) TCGA-EE-A3AE-06 X 9862717 9862717 G A SHROOM2 Missense_Mutation p.D257N 0.56 tolerated(0.11) possibly_damaging(0.821) TCGA-EE-A3AF-06 10 106125629 106125629 G A CCDC147 Missense_Mutation p.E219K 0.55 deleterious(0) probably_damaging(0.925) TCGA-EE-A3AF-06 10 116056671 116056671 G A AFAP1L2 Intron 0.69 TCGA-EE-A3AF-06 10 118969252 118969252 C T KCNK18 Silent p.V199V 0.62 TCGA-EE-A3AF-06 10 124361432 124361432 G A DMBT1 Missense_Mutation p.D1155N 0.55 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A3AF-06 10 125521430 125521430 C T CPXM2 Missense_Mutation p.E579K 0.58 tolerated(0.62) benign(0.159) TCGA-EE-A3AF-06 10 15138497 15138497 C T C10orf111 Silent p.Q109Q 0.42 TCGA-EE-A3AF-06 10 24884069 24884069 G A ARHGAP21 Missense_Mutation p.R1255C 0.42 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AF-06 10 25886748 25886748 G A GPR158 Silent p.K731K 0.25 TCGA-EE-A3AF-06 10 26575418 26575418 G A GAD2 Missense_Mutation p.A461T 0.33 deleterious(0) probably_damaging(0.938) TCGA-EE-A3AF-06 10 28225752 28225752 A C ARMC4 Missense_Mutation p.L719V 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AF-06 10 43617399 43617399 G A RET Silent p.R912R 0.48 TCGA-EE-A3AF-06 10 45430427 45430427 G A TMEM72 Missense_Mutation p.E225K 0.54 deleterious(0.04) benign(0.031) TCGA-EE-A3AF-06 10 55582773 55582773 C T PCDH15 Silent p.Q1573Q 0.68 TCGA-EE-A3AF-06 10 62637807 62637807 G A RHOBTB1 Missense_Mutation p.P529S 0.50 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A3AF-06 10 70547713 70547713 C T CCAR1 Silent p.L970L 0.62 TCGA-EE-A3AF-06 10 70547714 70547714 C T CCAR1 Missense_Mutation p.R971C 0.64 deleterious(0) unknown(0) TCGA-EE-A3AF-06 10 73439179 73439179 C T CDH23 Silent p.I188I 0.50 TCGA-EE-A3AF-06 10 75434284 75434284 G A AGAP5 3'UTR 0.57 TCGA-EE-A3AF-06 10 77818529 77818529 G T C10orf11 Silent p.V140V 0.50 TCGA-EE-A3AF-06 10 81928751 81928751 C T ANXA11 Missense_Mutation p.V179I 0.50 tolerated(0.41) benign(0.005) TCGA-EE-A3AF-06 10 89118113 89118113 C T NUTM2D Missense_Mutation p.L31F 0.28 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-EE-A3AF-06 10 93767976 93767976 T C BTAF1 Silent p.L1253L 0.47 TCGA-EE-A3AF-06 10 95791355 95791355 G A PLCE1 Silent p.R184R 0.48 TCGA-EE-A3AF-06 10 96707543 96707543 C T CYP2C9 Silent p.P163P 0.59 TCGA-EE-A3AF-06 10 98088481 98088481 G A DNTT Splice_Site p.X336_splice 0.69 TCGA-EE-A3AF-06 10 98803198 98803198 G A SLIT1 Silent p.L642L 0.52 TCGA-EE-A3AF-06 11 100064354 100064354 G A CNTN5 Missense_Mutation p.D615N 0.37 tolerated(0.12) benign(0.013) TCGA-EE-A3AF-06 11 1017189 1017189 G A MUC6 Missense_Mutation p.S1871L 0.09 probably_damaging(0.916) TCGA-EE-A3AF-06 11 103052562 103052562 G A DYNC2H1 Missense_Mutation p.E2142K 0.45 benign(0.015) TCGA-EE-A3AF-06 11 105924093 105924093 G A KBTBD3 Silent p.P441P 0.32 TCGA-EE-A3AF-06 11 108224518 108224518 C T ATM Silent p.I2899I 0.31 TCGA-EE-A3AF-06 11 108225561 108225561 T G ATM Missense_Mutation p.V2937G 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 11 111863713 111863713 C T DIXDC1 Silent p.L418L 0.42 TCGA-EE-A3AF-06 11 113111537 113111537 C T NCAM1 Intron 0.40 TCGA-EE-A3AF-06 11 113661046 113661046 G A ATF4P4 RNA 0.30 TCGA-EE-A3AF-06 11 114320708 114320708 C T REXO2 3'UTR 0.40 TCGA-EE-A3AF-06 11 117066765 117066765 A T SIDT2 Nonsense_Mutation p.K828* 0.44 TCGA-EE-A3AF-06 11 117209318 117209318 C T CEP164 Missense_Mutation p.L6F 0.29 deleterious(0.01) benign(0.019) TCGA-EE-A3AF-06 11 117301461 117301461 G A DSCAML1 Missense_Mutation p.P1948L 0.36 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AF-06 11 118375417 118375417 T A KMT2A Nonsense_Mutation p.L2937* 0.29 TCGA-EE-A3AF-06 11 118769512 118769512 G A BCL9L Missense_Mutation p.P1371L 0.46 probably_damaging(0.96) TCGA-EE-A3AF-06 11 118773103 118773103 G A BCL9L Missense_Mutation p.P450L 0.46 benign(0.006) TCGA-EE-A3AF-06 11 118773750 118773750 G A BCL9L Silent p.D261D 0.50 TCGA-EE-A3AF-06 11 123676701 123676701 G A OR6M1 Silent p.D119D 0.38 TCGA-EE-A3AF-06 11 123847882 123847882 G A OR10S1 Missense_Mutation p.H173Y 0.22 tolerated(0.06) possibly_damaging(0.893) TCGA-EE-A3AF-06 11 123900949 123900949 C T OR10G8 Missense_Mutation p.S207L 0.38 tolerated(1) benign(0.021) TCGA-EE-A3AF-06 11 124006949 124006949 C T VWA5A Silent p.I491I 0.29 TCGA-EE-A3AF-06 11 124310913 124310913 G A OR8B8 Silent p.V23V 0.24 TCGA-EE-A3AF-06 11 124413276 124413276 G A OR8B12 Missense_Mutation p.S92F 0.21 deleterious_low_confidence(0.02) benign(0.016) TCGA-EE-A3AF-06 11 128848751 128848751 T C ARHGAP32 Missense_Mutation p.N665S 0.37 tolerated(0.06) probably_damaging(0.937) TCGA-EE-A3AF-06 11 129306807 129306807 G C BARX2 Missense_Mutation p.A117P 0.35 tolerated(0.22) benign(0.167) TCGA-EE-A3AF-06 11 132306634 132306634 G A OPCML Missense_Mutation p.S235L 0.39 tolerated(0.09) benign(0.403) TCGA-EE-A3AF-06 11 134240234 134240234 G A GLB1L2 Missense_Mutation p.E386K 0.37 tolerated(0.69) benign(0.025) TCGA-EE-A3AF-06 11 16071294 16071294 C T SOX6 Intron 0.29 TCGA-EE-A3AF-06 11 1642939 1642939 C T KRTAP5-4 Missense_Mutation p.G129R 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3AF-06 11 1858497 1858497 G A SYT8 Missense_Mutation p.G348S 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AF-06 11 2186909 2186909 C T TH Missense_Mutation p.G428R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 11 26463531 26463531 C G ANO3 Missense_Mutation p.P38R 0.41 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A3AF-06 11 27389878 27389878 G A LGR4 Missense_Mutation p.P798S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 11 2790146 2790146 C T KCNQ1 Silent p.F529F 0.26 TCGA-EE-A3AF-06 11 3059395 3059395 G A CARS Missense_Mutation p.P229L 0.19 deleterious(0.02) benign(0.445) TCGA-EE-A3AF-06 11 30902704 30902704 C A DCDC1 Splice_Site p.X1742_splice 0.46 TCGA-EE-A3AF-06 11 30902705 30902705 C T DCDC1 Missense_Mutation p.E1742K 0.47 tolerated(0.16) possibly_damaging(0.486) TCGA-EE-A3AF-06 11 34152954 34152954 C T NAT10 Nonsense_Mutation p.Q466* 0.47 TCGA-EE-A3AF-06 11 35313843 35313843 G A SLC1A2 Missense_Mutation p.T361I 0.34 tolerated(0.22) probably_damaging(0.982) TCGA-EE-A3AF-06 11 36484219 36484219 A G PRR5L Missense_Mutation p.D347G 0.28 tolerated_low_confidence(0.18) benign(0.002) TCGA-EE-A3AF-06 11 372901 372901 C T B4GALNT4 Missense_Mutation p.A133V 0.22 deleterious(0) probably_damaging(0.975) TCGA-EE-A3AF-06 11 372902 372902 C T B4GALNT4 Silent p.A133A 0.21 TCGA-EE-A3AF-06 11 40136781 40136781 C T LRRC4C Silent p.P354P 0.37 TCGA-EE-A3AF-06 11 44098981 44098981 C T ACCS Intron 0.38 TCGA-EE-A3AF-06 11 46765543 46765543 G A CKAP5 3'UTR 0.30 TCGA-EE-A3AF-06 11 4791007 4791007 G A OR51F1 Silent p.I47I 0.42 TCGA-EE-A3AF-06 11 4825583 4825583 A C OR52R1 Missense_Mutation p.S10A 0.38 tolerated(0.28) benign(0.008) TCGA-EE-A3AF-06 11 4903118 4903118 C G OR51T1 Missense_Mutation p.L24V 0.25 tolerated(0.17) benign(0.051) TCGA-EE-A3AF-06 11 5009424 5009424 G A MMP26 5'UTR 0.38 TCGA-EE-A3AF-06 11 5020409 5020409 C T OR51L1 Missense_Mutation p.S66F 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AF-06 11 5021142 5021142 C T OR51L1 Silent p.V310V 0.31 TCGA-EE-A3AF-06 11 5080030 5080030 G A OR52E2 Silent p.L276L 0.33 TCGA-EE-A3AF-06 11 51515496 51515496 C T OR4C46 Missense_Mutation p.S72F 0.32 deleterious_low_confidence(0.01) benign(0.114) TCGA-EE-A3AF-06 11 5153632 5153632 G A OR52A5 Missense_Mutation p.P81S 0.35 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AF-06 11 5290845 5290845 G A HBE1 Missense_Mutation p.P52S 0.25 tolerated(0.18) benign(0.007) TCGA-EE-A3AF-06 11 55944743 55944743 C T OR5J2 Missense_Mutation p.S217F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 11 56043654 56043654 C T OR5T1 Silent p.F180F 0.32 TCGA-EE-A3AF-06 11 56143918 56143918 G A OR8U1 Missense_Mutation p.M273I 0.40 tolerated(0.36) benign(0.213) TCGA-EE-A3AF-06 11 56380059 56380059 C T OR5M1 Missense_Mutation p.G307E 0.40 tolerated(0.65) benign(0.002) TCGA-EE-A3AF-06 11 56380901 56380901 G A OR5M1 Silent p.I26I 0.37 TCGA-EE-A3AF-06 11 57003433 57003433 C T APLNR Missense_Mutation p.G349E 0.36 tolerated(0.1) possibly_damaging(0.903) TCGA-EE-A3AF-06 11 57076759 57076759 C T TNKS1BP1 Silent p.K1142K 0.32 TCGA-EE-A3AF-06 11 57080210 57080210 A C TNKS1BP1 Missense_Mutation p.V651G 0.38 deleterious(0.01) possibly_damaging(0.731) TCGA-EE-A3AF-06 11 5776099 5776099 G A OR52N4 Silent p.G43G 0.31 TCGA-EE-A3AF-06 11 59245615 59245615 C T OR4D10 Missense_Mutation p.S238F 0.41 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AF-06 11 59245616 59245616 C T OR4D10 Silent p.S238S 0.40 TCGA-EE-A3AF-06 11 6023742 6023742 G A OR56A4 Missense_Mutation p.P213S 0.29 tolerated(0.09) probably_damaging(1) TCGA-EE-A3AF-06 11 61727006 61727006 G C BEST1 Missense_Mutation p.D242H 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 11 62159693 62159693 C T ASRGL1 Silent p.A288A 0.36 TCGA-EE-A3AF-06 11 62383255 62383255 G A B3GAT3 Missense_Mutation p.T309I 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 11 62620423 62620423 C T SLC3A2 5'Flank 0.29 TCGA-EE-A3AF-06 11 63176257 63176257 G A SLC22A9 Missense_Mutation p.G503R 0.43 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AF-06 11 63357753 63357753 G A PLA2G16 Missense_Mutation p.A69V 0.37 tolerated(1) benign(0.053) TCGA-EE-A3AF-06 11 64004989 64004989 C T VEGFB Missense_Mutation p.P170S 0.24 tolerated(0.66) unknown(0) TCGA-EE-A3AF-06 11 64535117 64535117 G A SF1 Missense_Mutation p.P548L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-EE-A3AF-06 11 64675085 64675085 G A ATG2A Silent p.P853P 0.67 TCGA-EE-A3AF-06 11 64675086 64675086 G A ATG2A Missense_Mutation p.P853L 0.62 tolerated(0.5) benign(0.001) TCGA-EE-A3AF-06 11 64889751 64889751 G A FAU 5'UTR 0.45 TCGA-EE-A3AF-06 11 65273653 65273653 G A MALAT1 RNA 0.31 TCGA-EE-A3AF-06 11 66102365 66102365 C T RIN1 Missense_Mutation p.G302D 0.30 tolerated(0.17) benign(0.118) TCGA-EE-A3AF-06 11 66457550 66457550 C T SPTBN2 Missense_Mutation p.D1924N 0.41 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A3AF-06 11 67020215 67020215 C T KDM2A Missense_Mutation p.A940V 0.36 deleterious(0.02) benign(0.034) TCGA-EE-A3AF-06 11 67222865 67222865 G A CABP4 5'UTR 0.26 TCGA-EE-A3AF-06 11 67433852 67433852 G A ALDH3B2 Missense_Mutation p.P58S 0.40 deleterious(0.02) possibly_damaging(0.868) TCGA-EE-A3AF-06 11 6806718 6806718 C T OR2AG1 Silent p.I150I 0.35 TCGA-EE-A3AF-06 11 73714814 73714814 G A UCP3 Intron 0.31 TCGA-EE-A3AF-06 11 74303707 74303707 G A POLD3 Missense_Mutation p.A2T 0.47 deleterious_low_confidence(0.03) benign(0.025) TCGA-EE-A3AF-06 11 74547756 74547756 A G RNF169 Missense_Mutation p.N703S 0.40 tolerated(1) benign(0.003) TCGA-EE-A3AF-06 11 78369594 78369594 G A TENM4 Silent p.L2607L 0.36 TCGA-EE-A3AF-06 11 78497944 78497944 G A TENM4 Silent p.I788I 0.19 TCGA-EE-A3AF-06 11 803340 803340 G A PIDD Silent p.N181N 0.42 TCGA-EE-A3AF-06 11 84027976 84027976 C T DLG2 Intron 0.36 TCGA-EE-A3AF-06 11 86133792 86133792 G A CCDC81 3'UTR 0.32 TCGA-EE-A3AF-06 11 89880513 89880513 T C NAALAD2 Silent p.L70L 0.43 TCGA-EE-A3AF-06 11 92088413 92088413 C G FAT3 Missense_Mutation p.D1045E 0.36 benign(0.387) TCGA-EE-A3AF-06 11 9879814 9879814 A C SBF2 Missense_Mutation p.S687A 0.38 tolerated(0.49) benign(0.003) TCGA-EE-A3AF-06 12 100787155 100787155 G A SLC17A8 Missense_Mutation p.G161E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 12 10601904 10601904 C T KLRC1 Missense_Mutation p.E141K 0.37 tolerated(0.29) benign(0.011) TCGA-EE-A3AF-06 12 106895211 106895211 C T POLR3B Missense_Mutation p.T1032I 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 12 108008853 108008853 C T BTBD11 Missense_Mutation p.H639Y 0.42 tolerated(0.72) probably_damaging(0.934) TCGA-EE-A3AF-06 12 108011078 108011078 G A BTBD11 Missense_Mutation p.G699E 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 12 109201541 109201541 C T SSH1 Missense_Mutation p.G200E 0.32 deleterious(0.01) possibly_damaging(0.766) TCGA-EE-A3AF-06 12 109201542 109201542 C T SSH1 Missense_Mutation p.G200R 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3AF-06 12 11081834 11081834 C T PRH2 5'Flank 0.43 TCGA-EE-A3AF-06 12 110824147 110824147 G A ANAPC7 Missense_Mutation p.P302S 0.38 tolerated(0.05) benign(0.437) TCGA-EE-A3AF-06 12 113334690 113334690 C T RPH3A 3'UTR 0.56 TCGA-EE-A3AF-06 12 11421055 11421055 C T PRB3 Missense_Mutation p.G43E 0.39 deleterious(0.03) unknown(0) TCGA-EE-A3AF-06 12 117494655 117494655 G A TESC Silent p.L55L 0.50 TCGA-EE-A3AF-06 12 117696847 117696847 G A NOS1 Missense_Mutation p.P819L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 12 119631747 119631747 G A HSPB8 3'UTR 0.27 TCGA-EE-A3AF-06 12 121458598 121458598 G A OASL Silent p.F437F 0.30 TCGA-EE-A3AF-06 12 124285839 124285839 G A DNAH10 Missense_Mutation p.G707E 0.29 benign(0.039) TCGA-EE-A3AF-06 12 124399434 124399434 C T DNAH10 Missense_Mutation p.S3419F 0.42 probably_damaging(1) TCGA-EE-A3AF-06 12 125434747 125434747 G A DHX37 Missense_Mutation p.P1055L 0.33 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AF-06 12 133209066 133209066 G A POLE Silent p.V2055V 0.28 TCGA-EE-A3AF-06 12 14792859 14792859 G A GUCY2C Silent p.S698S 0.34 TCGA-EE-A3AF-06 12 20874906 20874906 C T SLCO1C1 Missense_Mutation p.S315F 0.36 deleterious(0.04) benign(0.053) TCGA-EE-A3AF-06 12 21918881 21918881 G A KCNJ8 Missense_Mutation p.P351S 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3AF-06 12 25261130 25261130 C T LRMP 3'UTR 0.38 TCGA-EE-A3AF-06 12 27081199 27081199 G A ASUN Missense_Mutation p.L175F 0.38 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AF-06 12 2943930 2943930 G A NRIP2 Nonsense_Mutation p.R74* 0.35 TCGA-EE-A3AF-06 12 352917 352917 C A SLC6A13 Nonsense_Mutation p.E89* 0.49 TCGA-EE-A3AF-06 12 40692938 40692938 C T LRRK2 Silent p.P1125P 0.41 TCGA-EE-A3AF-06 12 41967243 41967243 G A PDZRN4 Missense_Mutation p.E888K 0.32 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AF-06 12 42858895 42858895 G A PRICKLE1 Missense_Mutation p.A314V 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AF-06 12 46245314 46245316 CTC TT ARID2 Frame_Shift_Del p.S1137* 0.26 TCGA-EE-A3AF-06 12 46285666 46285666 C T ARID2 Nonsense_Mutation p.Q1676* 0.31 TCGA-EE-A3AF-06 12 47629950 47629950 C T PCED1B Silent p.F368F 0.40 TCGA-EE-A3AF-06 12 48723227 48723227 G A H1FNT Silent p.R51R 0.27 TCGA-EE-A3AF-06 12 48723228 48723228 G A H1FNT Missense_Mutation p.G52S 0.27 deleterious(0.03) benign(0.005) TCGA-EE-A3AF-06 12 48920064 48920064 C T OR8S1 Missense_Mutation p.S217F 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 12 49522429 49522429 G A TUBA1B Missense_Mutation p.T223I 0.30 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-EE-A3AF-06 12 50035928 50035928 C T FMNL3 3'UTR 0.34 TCGA-EE-A3AF-06 12 50035929 50035929 C T FMNL3 3'UTR 0.35 TCGA-EE-A3AF-06 12 50044968 50044968 C T FMNL3 Missense_Mutation p.D594N 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 12 51590748 51590748 G A POU6F1 Intron 0.27 TCGA-EE-A3AF-06 12 52308264 52308264 G A ACVRL1 Missense_Mutation p.G223S 0.28 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A3AF-06 12 52828043 52828043 C T KRT75 Missense_Mutation p.G16S 0.62 tolerated(0.14) benign(0.063) TCGA-EE-A3AF-06 12 52828044 52828044 C T KRT75 Silent p.R15R 0.62 TCGA-EE-A3AF-06 12 53001788 53001788 C T KRT73 3'UTR 0.43 TCGA-EE-A3AF-06 12 53170631 53170631 C A KRT76 Missense_Mutation p.G149W 0.23 tolerated(0.18) unknown(0) TCGA-EE-A3AF-06 12 53589216 53589216 A G ITGB7 Missense_Mutation p.V368A 0.35 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AF-06 12 53880315 53880315 C T MAP3K12 Silent p.G179G 0.36 TCGA-EE-A3AF-06 12 55614872 55614872 G A OR10A7 Missense_Mutation p.E22K 0.33 tolerated(0.2) benign(0.002) TCGA-EE-A3AF-06 12 55688823 55688823 G A OR6C6 Missense_Mutation p.S65F 0.35 deleterious_low_confidence(0.01) benign(0.228) TCGA-EE-A3AF-06 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.35 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-EE-A3AF-06 12 55726022 55726022 C T OR6C3 Missense_Mutation p.P180S 0.33 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EE-A3AF-06 12 55759590 55759590 G A OR6C75 Silent p.R232R 0.29 TCGA-EE-A3AF-06 12 55863729 55863729 G A OR6C70 Missense_Mutation p.S65F 0.30 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-EE-A3AF-06 12 56075782 56075782 G A METTL7B Missense_Mutation p.G82R 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A3AF-06 12 56726705 56726705 C T PAN2 Missense_Mutation p.M58I 0.35 tolerated_low_confidence(0.11) benign(0.014) TCGA-EE-A3AF-06 12 57987900 57987900 C T PIP4K2C Silent p.F89F 0.28 TCGA-EE-A3AF-06 12 6030214 6030214 C T ANO2 Missense_Mutation p.D172N 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 12 6080784 6080784 G A VWF Missense_Mutation p.S2510F 0.36 deleterious(0.05) possibly_damaging(0.831) TCGA-EE-A3AF-06 12 6105273 6105273 C T VWF Silent p.V1986V 0.27 TCGA-EE-A3AF-06 12 6122779 6122779 G A VWF Missense_Mutation p.R1830C 0.39 deleterious(0.01) probably_damaging(0.965) TCGA-EE-A3AF-06 12 62797974 62797974 C T USP15 Missense_Mutation p.S922F 0.32 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AF-06 12 66638963 66638963 G A IRAK3 Missense_Mutation p.R412Q 0.38 tolerated(0.39) benign(0.041) TCGA-EE-A3AF-06 12 6909310 6909310 C T CD4 Silent p.N2N 0.27 TCGA-EE-A3AF-06 12 6909311 6909311 C T CD4 Missense_Mutation p.R3W 0.27 deleterious(0.03) benign(0.001) TCGA-EE-A3AF-06 12 70983782 70983782 C T PTPRB Missense_Mutation p.G671E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 12 71976280 71976280 C T LGR5 Silent p.L533L 0.32 TCGA-EE-A3AF-06 12 77220806 77220806 G T ZDHHC17 Missense_Mutation p.W339L 0.42 tolerated(0.76) probably_damaging(0.968) TCGA-EE-A3AF-06 12 79679683 79679683 G A SYT1 Missense_Mutation p.E95K 0.29 tolerated(1) benign(0.004) TCGA-EE-A3AF-06 12 79693249 79693249 A G SYT1 Missense_Mutation p.E243G 0.33 deleterious(0) possibly_damaging(0.484) TCGA-EE-A3AF-06 12 80707269 80707269 C T OTOGL Missense_Mutation p.S1146F 0.32 deleterious(0.02) benign(0.014) TCGA-EE-A3AF-06 12 81283035 81283035 G A LIN7A Nonsense_Mutation p.R66* 0.41 TCGA-EE-A3AF-06 12 81768449 81768449 C T PPFIA2 Silent p.E410E 0.32 TCGA-EE-A3AF-06 12 82871080 82871080 C T METTL25 Silent p.P556P 0.30 TCGA-EE-A3AF-06 12 8330138 8330138 C T ZNF705A Silent p.L288L 0.33 TCGA-EE-A3AF-06 12 86377316 86377316 G A MGAT4C Missense_Mutation p.P94S 0.33 tolerated(0.23) benign(0.279) TCGA-EE-A3AF-06 12 8687287 8687287 G A CLEC4E Missense_Mutation p.R203W 0.45 tolerated(0.18) benign(0.049) TCGA-EE-A3AF-06 12 968516 968516 A G WNK1 Silent p.L502L 0.42 TCGA-EE-A3AF-06 13 103527856 103527856 C T ERCC5 Missense_Mutation p.T1055I 0.41 tolerated(0.18) benign(0.045) TCGA-EE-A3AF-06 13 110827604 110827604 G A COL4A1 Silent p.G1053G 0.30 TCGA-EE-A3AF-06 13 115090911 115090911 C T CHAMP1 Missense_Mutation p.P532S 0.26 tolerated(0.77) benign(0.002) TCGA-EE-A3AF-06 13 19748259 19748259 C T TUBA3C Missense_Mutation p.G366E 0.20 deleterious_low_confidence(0.02) benign(0.434) TCGA-EE-A3AF-06 13 21746782 21746782 G A SKA3 Missense_Mutation p.H48Y 0.47 tolerated(0.07) benign(0.052) TCGA-EE-A3AF-06 13 24443560 24443560 G A MIPEP Missense_Mutation p.L272F 0.53 deleterious(0.02) benign(0.151) TCGA-EE-A3AF-06 13 24465305 24465305 C T C1QTNF9B 3'Flank 0.61 TCGA-EE-A3AF-06 13 25283956 25283956 G A ATP12A Missense_Mutation p.G924E 0.29 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AF-06 13 28122439 28122439 G A LNX2 3'UTR 0.18 TCGA-EE-A3AF-06 13 28539058 28539058 G A CDX2 Silent p.T212T 0.29 TCGA-EE-A3AF-06 13 29600626 29600626 C T MTUS2 Silent p.I607I 0.17 TCGA-EE-A3AF-06 13 35733844 35733844 G A NBEA Missense_Mutation p.G1179D 0.58 tolerated_low_confidence(0.58) benign(0.035) TCGA-EE-A3AF-06 13 36050131 36050131 C T MAB21L1 Missense_Mutation p.E49K 0.53 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AF-06 13 36220454 36220454 C T NBEA Missense_Mutation p.P2559L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 13 38266349 38266349 G A TRPC4 Missense_Mutation p.P341S 0.49 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AF-06 13 52639552 52639552 G A NEK5 Silent p.I706I 0.20 TCGA-EE-A3AF-06 13 61986627 61986627 G A PCDH20 Silent p.F535F 0.52 TCGA-EE-A3AF-06 13 78474728 78474728 G A EDNRB Missense_Mutation p.P428L 0.45 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AF-06 13 98645174 98645174 A T IPO5 Missense_Mutation p.D251V 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 14 100795883 100795883 G A SLC25A47 Silent p.K276K 0.35 TCGA-EE-A3AF-06 14 101506553 101506553 C T MIR1185-1 5'Flank 0.42 TCGA-EE-A3AF-06 14 101506554 101506554 C T MIR1185-1 5'Flank 0.42 TCGA-EE-A3AF-06 14 103436544 103436544 G A CDC42BPB Missense_Mutation p.R647C 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AF-06 14 105173364 105173364 C T INF2 Missense_Mutation p.R321W 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 14 106208682 106208682 G A IGHG1 Silent p.C112C 0.34 TCGA-EE-A3AF-06 14 106471665 106471665 C T IGHV1-3 Missense_Mutation p.R6K 0.41 tolerated(0.68) benign(0.037) TCGA-EE-A3AF-06 14 106725270 106725270 G A IGHV3-23 Silent p.S94S 0.15 TCGA-EE-A3AF-06 14 106725271 106725271 G A IGHV3-23 Missense_Mutation p.S94F 0.15 deleterious_low_confidence(0) benign(0.404) TCGA-EE-A3AF-06 14 107178915 107178915 G A IGHV2-70 Missense_Mutation p.L88F 0.27 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AF-06 14 20249060 20249060 C T OR4M1 Silent p.F193F 0.13 TCGA-EE-A3AF-06 14 20344704 20344704 C T OR4K2 Missense_Mutation p.S93F 0.14 deleterious(0) benign(0.167) TCGA-EE-A3AF-06 14 20388955 20388955 G A OR4K5 Missense_Mutation p.G64R 0.14 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A3AF-06 14 20388956 20388956 G A OR4K5 Missense_Mutation p.G64E 0.15 deleterious(0) possibly_damaging(0.77) TCGA-EE-A3AF-06 14 21167737 21167737 C T RNASE4 Silent p.R69R 0.35 TCGA-EE-A3AF-06 14 22180841 22180841 C T TRAV2 Missense_Mutation p.S38L 0.35 tolerated(0.72) benign(0.002) TCGA-EE-A3AF-06 14 23315025 23315025 C T MMP14 Missense_Mutation p.P509L 0.44 deleterious(0.04) benign(0.112) TCGA-EE-A3AF-06 14 23901707 23901708 TT A MYH7 Frame_Shift_Del p.E170Dfs*6 0.29 TCGA-EE-A3AF-06 14 25043947 25043947 C T CTSG Silent p.A91A 0.36 TCGA-EE-A3AF-06 14 25075950 25075950 C T GZMH Silent p.G200G 0.31 TCGA-EE-A3AF-06 14 33292791 33292791 G A AKAP6 Silent p.G1924G 0.36 TCGA-EE-A3AF-06 14 39870725 39870725 G A FBXO33 Silent p.L351L 0.40 TCGA-EE-A3AF-06 14 45644608 45644608 C T FANCM Missense_Mutation p.S884F 0.32 deleterious(0) possibly_damaging(0.717) TCGA-EE-A3AF-06 14 50458988 50458988 C T C14orf182 3'UTR 0.33 TCGA-EE-A3AF-06 14 56757086 56757086 C T PELI2 Missense_Mutation p.S203F 0.26 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AF-06 14 56757087 56757087 C T PELI2 Silent p.S203S 0.25 TCGA-EE-A3AF-06 14 59112267 59112267 C T DACT1 Missense_Mutation p.S309F 0.32 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3AF-06 14 61264836 61264836 C G MNAT1 Missense_Mutation p.L92V 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AF-06 14 64484368 64484368 G A SYNE2 Nonsense_Mutation p.W1648* 0.32 TCGA-EE-A3AF-06 14 64727429 64727429 C T ESR2 Silent p.R230R 0.35 TCGA-EE-A3AF-06 14 65252492 65252492 C T SPTB Missense_Mutation p.E1247K 0.35 tolerated(0.36) possibly_damaging(0.595) TCGA-EE-A3AF-06 14 65417575 65417575 C T RAB15 Intron 0.42 TCGA-EE-A3AF-06 14 68274415 68274415 G A ZFYVE26 Missense_Mutation p.L196F 0.40 tolerated(1) benign(0.001) TCGA-EE-A3AF-06 14 70459140 70459140 G A SMOC1 Missense_Mutation p.G178E 0.45 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AF-06 14 71067380 71067380 C T MED6 5'UTR 0.40 TCGA-EE-A3AF-06 14 72196961 72196961 C T SIPA1L1 Missense_Mutation p.P1623S 0.43 tolerated(0.59) possibly_damaging(0.489) TCGA-EE-A3AF-06 14 73141062 73141062 C T DPF3 Missense_Mutation p.D253N 0.27 tolerated(0.16) benign(0.1) TCGA-EE-A3AF-06 14 77242550 77242550 G A VASH1 Silent p.V282V 0.30 TCGA-EE-A3AF-06 14 77732890 77732890 C T NGB Missense_Mutation p.D149N 0.34 tolerated_low_confidence(0.31) benign(0.001) TCGA-EE-A3AF-06 14 81606081 81606081 G A TSHR Missense_Mutation p.E251K 0.33 tolerated(1) benign(0.04) TCGA-EE-A3AF-06 14 81609961 81609961 G A TSHR Nonsense_Mutation p.W520* 0.39 TCGA-EE-A3AF-06 14 92126199 92126199 C T CATSPERB Missense_Mutation p.V472I 0.27 tolerated(0.89) benign(0.032) TCGA-EE-A3AF-06 14 92126200 92126200 C T CATSPERB Silent p.K471K 0.24 TCGA-EE-A3AF-06 14 92953117 92953117 G A SLC24A4 Silent p.A510A 0.28 TCGA-EE-A3AF-06 14 94912840 94912840 C T SERPINA11 Missense_Mutation p.E249K 0.38 tolerated(0.68) possibly_damaging(0.677) TCGA-EE-A3AF-06 14 94929540 94929540 G A SERPINA9 Missense_Mutation p.P400S 0.30 tolerated(0.13) benign(0.103) TCGA-EE-A3AF-06 14 95080882 95080882 C T SERPINA3 Missense_Mutation p.T35I 0.33 tolerated(0.17) benign(0.009) TCGA-EE-A3AF-06 14 95081291 95081291 G A SERPINA3 Silent p.Q171Q 0.37 TCGA-EE-A3AF-06 14 99865352 99865352 A C SETD3 Silent p.A483A 0.38 TCGA-EE-A3AF-06 15 23692364 23692364 A C GOLGA6L2 5'UTR 0.24 TCGA-EE-A3AF-06 15 25490655 25490655 G A SNORD115-41 RNA 0.32 TCGA-EE-A3AF-06 15 25959073 25959073 G A ATP10A Missense_Mutation p.P698S 0.38 deleterious(0.01) possibly_damaging(0.785) TCGA-EE-A3AF-06 15 28196952 28196952 G A OCA2 Silent p.V643V 0.43 TCGA-EE-A3AF-06 15 28478878 28478878 G A HERC2 Missense_Mutation p.P1428L 0.31 benign(0.002) TCGA-EE-A3AF-06 15 31851206 31851206 G A OTUD7A Silent p.I172I 0.41 TCGA-EE-A3AF-06 15 34648549 34648549 A G NUTM1 Silent p.V752V 0.38 TCGA-EE-A3AF-06 15 40913692 40913692 C T CASC5 Silent p.A436A 0.31 TCGA-EE-A3AF-06 15 41228768 41228768 C T DLL4 Missense_Mutation p.P528L 0.36 deleterious(0) possibly_damaging(0.852) TCGA-EE-A3AF-06 15 43713259 43713259 C T TP53BP1 Missense_Mutation p.R1405Q 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 15 44811379 44811379 C T CTDSPL2 Silent p.F375F 0.39 TCGA-EE-A3AF-06 15 44811380 44811380 C T CTDSPL2 Missense_Mutation p.R376C 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 15 45258395 45258395 G A C15orf43 Missense_Mutation p.E130K 0.38 tolerated(0.6) benign(0.006) TCGA-EE-A3AF-06 15 45965900 45965900 C T SQRDL Silent p.F185F 0.40 TCGA-EE-A3AF-06 15 48063188 48063188 C T SEMA6D Missense_Mutation p.P810S 0.30 tolerated(1) benign(0.14) TCGA-EE-A3AF-06 15 49293278 49293278 G A SECISBP2L Missense_Mutation p.L682F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 15 51350382 51350382 A T TNFAIP8L3 Missense_Mutation p.I192N 0.37 deleterious(0.02) possibly_damaging(0.903) TCGA-EE-A3AF-06 15 51507964 51507964 C T CYP19A1 Missense_Mutation p.R265K 0.34 tolerated(0.9) benign(0.002) TCGA-EE-A3AF-06 15 52540959 52540959 A T MYO5C Missense_Mutation p.F562I 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 15 53905868 53905868 C T WDR72 Missense_Mutation p.R956Q 0.43 tolerated(0.33) benign(0.002) TCGA-EE-A3AF-06 15 57730863 57730863 G A CGNL1 Silent p.V222V 0.36 TCGA-EE-A3AF-06 15 57810594 57810594 G A CGNL1 Missense_Mutation p.E872K 0.42 deleterious(0.03) benign(0.082) TCGA-EE-A3AF-06 15 62165535 62165535 C T VPS13C Silent p.K3496K 0.36 TCGA-EE-A3AF-06 15 63040586 63040586 G A TLN2 Silent p.L1354L 0.40 TCGA-EE-A3AF-06 15 63040587 63040587 T A TLN2 Missense_Mutation p.C1355S 0.41 tolerated(0.1) benign(0.222) TCGA-EE-A3AF-06 15 63970328 63970328 C G HERC1 Missense_Mutation p.Q2262H 0.32 benign(0.145) TCGA-EE-A3AF-06 15 64410326 64410326 G T SNX1 Silent p.V94V 0.42 TCGA-EE-A3AF-06 15 66644506 66644506 C T TIPIN Missense_Mutation p.R58K 0.35 tolerated(0.73) benign(0.009) TCGA-EE-A3AF-06 15 68695276 68695276 C T ITGA11 Missense_Mutation p.D49N 0.32 tolerated(0.22) benign(0.047) TCGA-EE-A3AF-06 15 71124496 71124496 C T LARP6 Silent p.K457K 0.20 TCGA-EE-A3AF-06 15 71124524 71124524 G A LARP6 Missense_Mutation p.P448L 0.20 tolerated(0.08) benign(0.145) TCGA-EE-A3AF-06 15 71124525 71124525 G A LARP6 Missense_Mutation p.P448S 0.19 tolerated(0.16) benign(0.418) TCGA-EE-A3AF-06 15 74711172 74711172 G A SEMA7A Silent p.F100F 0.44 TCGA-EE-A3AF-06 15 75552821 75552821 C T GOLGA6C Silent p.H64H 0.46 TCGA-EE-A3AF-06 15 78764257 78764257 C T IREB2 Silent p.L292L 0.21 TCGA-EE-A3AF-06 15 79291164 79291164 A T RASGRF1 Missense_Mutation p.F933Y 0.28 tolerated(0.05) benign(0.059) TCGA-EE-A3AF-06 15 80872806 80872806 G A ARNT2 Silent p.T556T 0.50 TCGA-EE-A3AF-06 15 86687045 86687045 C T AGBL1 Silent p.L31L 0.39 TCGA-EE-A3AF-06 15 86807793 86807793 A G AGBL1 Missense_Mutation p.K418R 0.49 tolerated(0.14) benign(0.004) TCGA-EE-A3AF-06 15 89008963 89008963 A T MRPL46 Silent p.R90R 0.30 TCGA-EE-A3AF-06 15 89401900 89401900 C T ACAN Silent p.A2028A 0.30 TCGA-EE-A3AF-06 15 89873448 89873448 G A POLG Missense_Mutation p.S240L 0.62 tolerated(0.11) benign(0.008) TCGA-EE-A3AF-06 15 99926319 99926319 G A LRRC28 3'UTR 0.23 TCGA-EE-A3AF-06 15 99926320 99926320 A T LRRC28 3'UTR 0.23 TCGA-EE-A3AF-06 16 1033775 1033775 G A SOX8 Missense_Mutation p.R157H 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 16 1270072 1270072 G A CACNA1H Missense_Mutation p.R2047K 0.30 tolerated(0.84) benign(0.004) TCGA-EE-A3AF-06 16 14969265 14969265 C A NOMO1 Missense_Mutation p.A781D 0.14 deleterious(0.03) benign(0.235) TCGA-EE-A3AF-06 16 14969266 14969266 C G NOMO1 Silent p.A781A 0.14 TCGA-EE-A3AF-06 16 15829411 15829411 C T MYH11 Silent p.K1113K 0.36 TCGA-EE-A3AF-06 16 16272784 16272784 G A ABCC6 Silent p.S762S 0.24 TCGA-EE-A3AF-06 16 19451869 19451869 C T TMC5 Missense_Mutation p.S170F 0.30 tolerated_low_confidence(0.1) benign(0.006) TCGA-EE-A3AF-06 16 20429464 20429464 G A ACSM5 Silent p.G96G 0.38 TCGA-EE-A3AF-06 16 20696709 20696709 G A ACSM1 Missense_Mutation p.P70L 0.37 tolerated(0.11) possibly_damaging(0.821) TCGA-EE-A3AF-06 16 21771877 21771877 C T OTOA 3'UTR 0.27 TCGA-EE-A3AF-06 16 22132860 22132860 C T VWA3A Silent p.V426V 0.32 TCGA-EE-A3AF-06 16 23117767 23117767 G A USP31 Silent p.F271F 0.44 TCGA-EE-A3AF-06 16 2514503 2514503 C T C16orf59 Intron 0.26 TCGA-EE-A3AF-06 16 25232823 25232823 C T AQP8 Silent p.I102I 0.34 TCGA-EE-A3AF-06 16 2550412 2550412 C T TBC1D24 Silent p.F482F 0.50 TCGA-EE-A3AF-06 16 27802769 27802769 C T GSG1L Silent p.A306A 0.35 TCGA-EE-A3AF-06 16 27974477 27974477 C T GSG1L Missense_Mutation p.G133R 0.32 deleterious(0) benign(0.33) TCGA-EE-A3AF-06 16 27974478 27974478 T G GSG1L Missense_Mutation p.K132N 0.32 deleterious(0) possibly_damaging(0.849) TCGA-EE-A3AF-06 16 2818193 2818193 C T SRRM2 Missense_Mutation p.S2555F 0.36 probably_damaging(0.996) TCGA-EE-A3AF-06 16 3025725 3025725 G A PKMYT1 Missense_Mutation p.A156V 0.42 tolerated(0.12) benign(0.079) TCGA-EE-A3AF-06 16 30507602 30507602 C T ITGAL Missense_Mutation p.P563L 0.28 tolerated(0.13) benign(0.009) TCGA-EE-A3AF-06 16 30507603 30507603 C T ITGAL Silent p.P563P 0.28 TCGA-EE-A3AF-06 16 30666289 30666289 C A PRR14 Missense_Mutation p.S333Y 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3AF-06 16 30981001 30981001 G T SETD1A Missense_Mutation p.V1003L 0.26 benign(0.001) TCGA-EE-A3AF-06 16 31072632 31072632 C T ZNF668 Silent p.P562P 0.29 TCGA-EE-A3AF-06 16 31090251 31090251 A G ZNF646 Missense_Mutation p.N869S 0.37 tolerated(0.25) benign(0.007) TCGA-EE-A3AF-06 16 3544818 3544818 C T C16orf90 Missense_Mutation p.E36K 0.41 deleterious_low_confidence(0) possibly_damaging(0.81) TCGA-EE-A3AF-06 16 3632297 3632297 G A SLX4 3'UTR 0.57 TCGA-EE-A3AF-06 16 3632298 3632298 T A SLX4 3'UTR 0.59 TCGA-EE-A3AF-06 16 4254583 4254583 G A SRL Silent p.I38I 0.35 TCGA-EE-A3AF-06 16 4564078 4564078 C T CDIP1 Silent p.L18L 0.32 TCGA-EE-A3AF-06 16 48595073 48595073 G A N4BP1 Missense_Mutation p.P494L 0.54 deleterious(0.01) possibly_damaging(0.548) TCGA-EE-A3AF-06 16 49670602 49670602 G A ZNF423 Silent p.L821L 0.56 TCGA-EE-A3AF-06 16 49670603 49670603 G A ZNF423 Silent p.I820I 0.56 TCGA-EE-A3AF-06 16 49671655 49671655 G A ZNF423 Missense_Mutation p.P470S 0.53 deleterious(0.05) benign(0.421) TCGA-EE-A3AF-06 16 55890354 55890354 C T CES5A Missense_Mutation p.E383K 0.63 tolerated(0.73) benign(0.124) TCGA-EE-A3AF-06 16 57597802 57597802 C T GPR114 Missense_Mutation p.P114S 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 16 57597803 57597803 C T GPR114 Missense_Mutation p.P114L 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 16 615297 615297 C T C16orf11 Missense_Mutation p.A569V 0.56 deleterious_low_confidence(0.04) possibly_damaging(0.722) TCGA-EE-A3AF-06 16 628883 628883 G A PIGQ Missense_Mutation p.D390N 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 16 67264128 67264128 C T FHOD1 Missense_Mutation p.E1019K 0.70 tolerated(0.36) possibly_damaging(0.515) TCGA-EE-A3AF-06 16 76482101 76482101 T C CNTNAP4 Missense_Mutation p.L219P 0.57 tolerated(0.17) possibly_damaging(0.797) TCGA-EE-A3AF-06 16 81253798 81253798 C A PKD1L2 Nonsense_Mutation p.G60* 0.67 TCGA-EE-A3AF-06 16 85667574 85667574 G A GSE1 Missense_Mutation p.R21K 0.40 deleterious(0.03) unknown(0) TCGA-EE-A3AF-06 16 85667575 85667575 G A GSE1 Silent p.R21R 0.40 TCGA-EE-A3AF-06 16 86565616 86565616 G A MTHFSD 3'UTR 0.55 TCGA-EE-A3AF-06 16 87790057 87790057 G A KLHDC4 Missense_Mutation p.P73L 0.52 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AF-06 16 87790058 87790058 G A KLHDC4 Missense_Mutation p.P73S 0.52 deleterious(0) possibly_damaging(0.893) TCGA-EE-A3AF-06 16 9857369 9857369 G A GRIN2A Silent p.F1344F 0.25 TCGA-EE-A3AF-06 17 10243706 10243706 C T MYH13 Missense_Mutation p.G636E 0.39 deleterious(0.05) benign(0.351) TCGA-EE-A3AF-06 17 10304406 10304406 C T MYH8 Missense_Mutation p.D1071N 0.47 tolerated(0.06) probably_damaging(1) TCGA-EE-A3AF-06 17 10351249 10351249 C T MYH4 Silent p.R1617R 0.36 TCGA-EE-A3AF-06 17 10356486 10356486 C T MYH4 Missense_Mutation p.E1032K 0.41 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AF-06 17 11835379 11835379 T A DNAH9 Missense_Mutation p.F4052I 0.32 probably_damaging(0.989) TCGA-EE-A3AF-06 17 12903527 12903527 G A ELAC2 Nonsense_Mutation p.Q457* 0.25 TCGA-EE-A3AF-06 17 1374529 1374529 T A MYO1C Missense_Mutation p.Y708F 0.27 tolerated(0.08) benign(0.128) TCGA-EE-A3AF-06 17 15532010 15532010 C T TRIM16 Silent p.K538K 0.38 TCGA-EE-A3AF-06 17 17696276 17696276 G T RAI1 Missense_Mutation p.R5L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 17 19216560 19216560 C T EPN2 Missense_Mutation p.P372L 0.25 deleterious(0.03) benign(0.059) TCGA-EE-A3AF-06 17 19289711 19289711 G A MFAP4 Missense_Mutation p.S75L 0.45 tolerated(0.32) benign(0.002) TCGA-EE-A3AF-06 17 21319931 21319931 C T KCNJ12 Missense_Mutation p.P426L 0.13 tolerated_low_confidence(0.06) benign(0.061) TCGA-EE-A3AF-06 17 21825499 21825499 G T FAM27L RNA 0.26 TCGA-EE-A3AF-06 17 2274703 2274703 C T SGSM2 Missense_Mutation p.P524L 0.41 tolerated(0.42) benign(0.003) TCGA-EE-A3AF-06 17 2274704 2274704 C T SGSM2 Silent p.P524P 0.42 TCGA-EE-A3AF-06 17 2598354 2598354 G A CLUH Silent p.F844F 0.30 TCGA-EE-A3AF-06 17 27613294 27613294 G A NUFIP2 Missense_Mutation p.P573L 0.39 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3AF-06 17 30594876 30594876 T A RHBDL3 Intron 0.40 TCGA-EE-A3AF-06 17 31322664 31322664 G A SPACA3 Missense_Mutation p.G91D 0.53 tolerated(0.08) benign(0.004) TCGA-EE-A3AF-06 17 34192239 34192239 C T C17orf66 Silent p.R100R 0.40 TCGA-EE-A3AF-06 17 35506859 35506859 G A ACACA Missense_Mutation p.R1870W 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 17 36357250 36357250 G A RP11-1407O15.2 Missense_Mutation p.P335S 0.11 TCGA-EE-A3AF-06 17 37262116 37262116 C T PLXDC1 Missense_Mutation p.D268N 0.32 tolerated(0.08) benign(0.199) TCGA-EE-A3AF-06 17 38061141 38061141 C T GSDMB Missense_Mutation p.R392Q 0.30 tolerated(0.27) benign(0.036) TCGA-EE-A3AF-06 17 38079467 38079467 G A ORMDL3 Missense_Mutation p.P75L 0.28 tolerated(0.74) benign(0.014) TCGA-EE-A3AF-06 17 38079468 38079468 G A ORMDL3 Missense_Mutation p.P75S 0.28 tolerated(0.46) benign(0.023) TCGA-EE-A3AF-06 17 38975091 38975091 G A KRT10 Missense_Mutation p.H566Y 0.33 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A3AF-06 17 3920857 3920857 G A ZZEF1 Silent p.V2603V 0.43 TCGA-EE-A3AF-06 17 39537454 39537454 C T KRT34 Missense_Mutation p.E190K 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 17 40836075 40836075 G A CNTNAP1 Missense_Mutation p.R64Q 0.34 tolerated(0.37) benign(0.004) TCGA-EE-A3AF-06 17 40850783 40850783 C T CNTNAP1 Missense_Mutation p.S1337L 0.37 tolerated_low_confidence(0.22) benign(0.001) TCGA-EE-A3AF-06 17 41002308 41002308 C T AOC2 Silent p.L738L 0.30 TCGA-EE-A3AF-06 17 41002309 41002309 C T AOC2 Missense_Mutation p.P739S 0.31 tolerated(0.26) benign(0.028) TCGA-EE-A3AF-06 17 41370030 41370030 C T TMEM106A 3'UTR 0.29 TCGA-EE-A3AF-06 17 41852141 41852141 G A DUSP3 Silent p.N97N 0.40 TCGA-EE-A3AF-06 17 42390513 42390513 G A RUNDC3A Missense_Mutation p.G89R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AF-06 17 42390514 42390514 G A RUNDC3A Missense_Mutation p.G89E 0.33 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A3AF-06 17 43045296 43045296 C T C1QL1 Missense_Mutation p.G41S 0.31 tolerated(1) benign(0) TCGA-EE-A3AF-06 17 4455542 4455542 G A MYBBP1A Silent p.D261D 0.31 TCGA-EE-A3AF-06 17 4644107 4644107 C T ZMYND15 Silent p.L88L 0.34 TCGA-EE-A3AF-06 17 46607721 46607721 C T HOXB1 Nonsense_Mutation p.W182* 0.25 TCGA-EE-A3AF-06 17 4692539 4692539 G A GLTPD2 Missense_Mutation p.G42E 0.37 tolerated(0.44) benign(0.011) TCGA-EE-A3AF-06 17 49239283 49239283 C T NME1 3'UTR 0.33 TCGA-EE-A3AF-06 17 5308443 5308443 G A NUP88 Silent p.I326I 0.37 TCGA-EE-A3AF-06 17 54305275 54305275 C T ANKFN1 Intron 0.28 TCGA-EE-A3AF-06 17 55956975 55956975 G A CUEDC1 Missense_Mutation p.P154L 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AF-06 17 56288020 56288020 G A MKS1 Missense_Mutation p.H342Y 0.38 tolerated(0.05) benign(0) TCGA-EE-A3AF-06 17 56357732 56357732 C T MPO Silent p.R81R 0.30 TCGA-EE-A3AF-06 17 56389437 56389437 G A BZRAP1 Silent p.L915L 0.28 TCGA-EE-A3AF-06 17 57348355 57348355 C T GDPD1 Missense_Mutation p.L257F 0.25 tolerated(0.7) benign(0.001) TCGA-EE-A3AF-06 17 62080291 62080291 G A ICAM2 Intron 0.36 TCGA-EE-A3AF-06 17 63193253 63193253 C T RGS9 Silent p.I290I 0.17 TCGA-EE-A3AF-06 17 649017 649017 G A GEMIN4 Silent p.L756L 0.14 TCGA-EE-A3AF-06 17 70119026 70119026 C T SOX9 Missense_Mutation p.P200S 0.23 tolerated(0.42) benign(0.214) TCGA-EE-A3AF-06 17 72351339 72351339 C T KIF19 Missense_Mutation p.P962L 0.32 deleterious(0.02) benign(0.009) TCGA-EE-A3AF-06 17 72351340 72351340 C T KIF19 Silent p.P962P 0.33 TCGA-EE-A3AF-06 17 7256760 7256760 C T KCTD11 Missense_Mutation p.P167S 0.40 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 17 7311760 7311760 C G NLGN2 Missense_Mutation p.I62M 0.24 tolerated(0.14) probably_damaging(0.994) TCGA-EE-A3AF-06 17 7345942 7345942 G A FGF11 Silent p.K146K 0.31 TCGA-EE-A3AF-06 17 7345943 7345943 G A FGF11 Missense_Mutation p.E147K 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 17 73566141 73566141 G A LLGL2 Missense_Mutation p.G560E 0.38 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AF-06 17 73566142 73566142 G A LLGL2 Silent p.G560G 0.43 TCGA-EE-A3AF-06 17 74005391 74005391 C T EVPL Missense_Mutation p.D1299N 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 17 74383547 74383547 G A SPHK1 Missense_Mutation p.M431I 0.29 tolerated(0.21) benign(0.003) TCGA-EE-A3AF-06 17 76522783 76522783 C T DNAH17 Missense_Mutation p.E1221K 0.39 benign(0.001) TCGA-EE-A3AF-06 17 7807809 7807809 C T CHD3 Missense_Mutation p.P1374L 0.31 possibly_damaging(0.908) TCGA-EE-A3AF-06 17 78091451 78091451 A C GAA Missense_Mutation p.E795A 0.39 tolerated(0.51) benign(0.004) TCGA-EE-A3AF-06 17 7951773 7951773 C T ALOX15B Nonsense_Mutation p.Q641* 0.37 TCGA-EE-A3AF-06 17 79671403 79671403 C T SLC25A10 Silent p.V68V 0.31 TCGA-EE-A3AF-06 17 79671404 79671404 C T SLC25A10 Nonsense_Mutation p.Q69* 0.32 TCGA-EE-A3AF-06 18 12325306 12325306 C T TUBB6 Missense_Mutation p.P173L 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A3AF-06 18 22057039 22057039 G A HRH4 Missense_Mutation p.R229K 0.30 tolerated(0.33) benign(0.021) TCGA-EE-A3AF-06 18 25570188 25570188 C A CDH2 Missense_Mutation p.V491L 0.34 deleterious(0.01) benign(0.006) TCGA-EE-A3AF-06 18 2891995 2891995 C T EMILIN2 Missense_Mutation p.H624Y 0.26 tolerated(1) benign(0.001) TCGA-EE-A3AF-06 18 29049253 29049253 C T DSG3 Missense_Mutation p.S613L 0.31 tolerated(0.14) benign(0.001) TCGA-EE-A3AF-06 18 29126575 29126575 G A DSG2 Missense_Mutation p.V1076M 0.34 deleterious(0) possibly_damaging(0.59) TCGA-EE-A3AF-06 18 2923774 2923774 C A LPIN2 Nonsense_Mutation p.E725* 0.36 TCGA-EE-A3AF-06 18 2925282 2925320 GGGCTCTGTGGGGATGGGGTCCACTGTGATGGATTCTTC - LPIN2 In_Frame_Del p.E614_P626del 0.17 TCGA-EE-A3AF-06 18 29480920 29480920 A G TRAPPC8 Silent p.D486D 0.33 TCGA-EE-A3AF-06 18 29848384 29848384 C G GAREM Missense_Mutation p.G694A 0.29 tolerated(0.69) benign(0.001) TCGA-EE-A3AF-06 18 30349751 30349751 G A KLHL14 Silent p.L268L 0.41 TCGA-EE-A3AF-06 18 31319124 31319124 G A ASXL3 Missense_Mutation p.E586K 0.38 possibly_damaging(0.787) TCGA-EE-A3AF-06 18 31319226 31319226 G A ASXL3 Missense_Mutation p.G620R 0.31 possibly_damaging(0.71) TCGA-EE-A3AF-06 18 31319227 31319227 G A ASXL3 Missense_Mutation p.G620E 0.31 benign(0.034) TCGA-EE-A3AF-06 18 3879381 3879381 G A DLGAP1 Missense_Mutation p.R230C 0.35 deleterious(0.03) possibly_damaging(0.719) TCGA-EE-A3AF-06 18 42530992 42530992 C T SETBP1 Missense_Mutation p.P563S 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 18 44555050 44555050 C T TCEB3C Silent p.E388E 0.04 TCGA-EE-A3AF-06 18 44561224 44561224 C T TCEB3B Missense_Mutation p.G138R 0.31 tolerated(0.58) probably_damaging(0.987) TCGA-EE-A3AF-06 18 45371633 45371633 T A SMAD2 Intron 0.46 TCGA-EE-A3AF-06 18 47101801 47101801 G A LIPG Missense_Mutation p.D212N 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 18 47777163 47777163 A G CCDC11 Silent p.L321L 0.34 TCGA-EE-A3AF-06 18 55334335 55334335 C T ATP8B1 Silent p.G758G 0.35 TCGA-EE-A3AF-06 18 59911996 59911996 G A KIAA1468 Splice_Site p.X541_splice 0.35 TCGA-EE-A3AF-06 18 59911997 59911997 G A KIAA1468 Missense_Mutation p.E541K 0.35 deleterious(0) possibly_damaging(0.619) TCGA-EE-A3AF-06 18 61627535 61627535 C T HMSD Silent p.F122F 0.20 TCGA-EE-A3AF-06 18 658109 658109 G A C18orf56 Missense_Mutation p.R47C 0.43 benign(0) TCGA-EE-A3AF-06 18 70451104 70451104 G A NETO1 Missense_Mutation p.S226L 0.34 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A3AF-06 18 77918291 77918291 C T PARD6G Missense_Mutation p.G165D 0.39 deleterious(0.01) possibly_damaging(0.757) TCGA-EE-A3AF-06 18 77918292 77918292 C T PARD6G Missense_Mutation p.G165S 0.39 deleterious(0.01) benign(0.271) TCGA-EE-A3AF-06 19 10131441 10131441 G A RDH8 Missense_Mutation p.E187K 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 19 10799882 10799882 C T ILF3 Missense_Mutation p.S864F 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AF-06 19 10799883 10799883 C T ILF3 Silent p.S864S 0.32 TCGA-EE-A3AF-06 19 11018818 11018818 C T CARM1 Silent p.F150F 0.42 TCGA-EE-A3AF-06 19 11346378 11346378 C T DOCK6 Missense_Mutation p.R817Q 0.18 tolerated(0.61) benign(0.001) TCGA-EE-A3AF-06 19 11978880 11978880 G A ZNF439 Silent p.G332G 0.37 TCGA-EE-A3AF-06 19 12874530 12874530 G A HOOK2 Silent p.S630S 0.35 TCGA-EE-A3AF-06 19 13476136 13476136 C T CACNA1A Missense_Mutation p.G260E 0.47 probably_damaging(0.988) TCGA-EE-A3AF-06 19 13873689 13873689 C T CCDC130 Missense_Mutation p.P333L 0.30 tolerated(0.31) benign(0.345) TCGA-EE-A3AF-06 19 13873690 13873690 C T CCDC130 Silent p.P333P 0.30 TCGA-EE-A3AF-06 19 14583574 14583574 G A PTGER1 Missense_Mutation p.A336V 0.38 tolerated(0.05) probably_damaging(0.918) TCGA-EE-A3AF-06 19 15905657 15905657 C A OR10H5 Missense_Mutation p.Q267K 0.43 tolerated(0.19) benign(0.005) TCGA-EE-A3AF-06 19 15918348 15918348 G A OR10H1 Missense_Mutation p.A167V 0.44 deleterious(0) benign(0.005) TCGA-EE-A3AF-06 19 16024617 16024617 C T CYP4F11 Silent p.R500R 0.37 TCGA-EE-A3AF-06 19 1615702 1615702 G T TCF3 Silent p.A523A 0.40 TCGA-EE-A3AF-06 19 16799206 16799206 G A TMEM38A 3'UTR 0.36 TCGA-EE-A3AF-06 19 17361198 17361198 C T USHBP1 Missense_Mutation p.A650T 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AF-06 19 17396327 17396327 C T ANKLE1 Silent p.G488G 0.33 TCGA-EE-A3AF-06 19 17611209 17611209 G A SLC27A1 Silent p.Q443Q 0.40 TCGA-EE-A3AF-06 19 18108989 18108989 C T KCNN1 Missense_Mutation p.S469L 0.44 tolerated(0.11) benign(0.008) TCGA-EE-A3AF-06 19 18649229 18649229 G A FKBP8 Missense_Mutation p.P190L 0.52 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A3AF-06 19 21991700 21991700 C T ZNF43 Missense_Mutation p.S380N 0.30 tolerated(0.87) benign(0.002) TCGA-EE-A3AF-06 19 22154181 22154181 G A ZNF208 Missense_Mutation p.H1219Y 0.53 deleterious(0) possibly_damaging(0.692) TCGA-EE-A3AF-06 19 2434473 2434473 G A LMNB2 Missense_Mutation p.A341V 0.43 tolerated(0.12) benign(0.037) TCGA-EE-A3AF-06 19 2717325 2717325 G A DIRAS1 Silent p.L160L 0.33 TCGA-EE-A3AF-06 19 30935918 30935918 G A ZNF536 Silent p.G483G 0.28 TCGA-EE-A3AF-06 19 30936114 30936114 G A ZNF536 Missense_Mutation p.E549K 0.38 tolerated(0.06) benign(0.169) TCGA-EE-A3AF-06 19 33870288 33870288 C T CEBPG Missense_Mutation p.P48L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 19 3590080 3590080 G A GIPC3 Silent p.Q277Q 0.44 TCGA-EE-A3AF-06 19 36245416 36245416 C T LIN37 3'UTR 0.33 TCGA-EE-A3AF-06 19 36349665 36349665 C T KIRREL2 Missense_Mutation p.P141S 0.45 tolerated(0.12) probably_damaging(0.942) TCGA-EE-A3AF-06 19 36831391 36831391 T C ZFP14 Missense_Mutation p.H446R 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 19 39051805 39051805 C T RYR1 Missense_Mutation p.S4112L 0.35 benign(0) TCGA-EE-A3AF-06 19 39660184 39660184 C T PAK4 5'UTR 0.34 TCGA-EE-A3AF-06 19 40433797 40433797 C T FCGBP Missense_Mutation p.E158K 0.35 possibly_damaging(0.628) TCGA-EE-A3AF-06 19 40900066 40900066 G A PRX Missense_Mutation p.A1398V 0.37 tolerated(0.07) benign(0.047) TCGA-EE-A3AF-06 19 41351204 41351204 G A CYP2A6 Missense_Mutation p.P386S 0.35 possibly_damaging(0.553) TCGA-EE-A3AF-06 19 41454959 41454959 G A AC092071.1 3'Flank 0.34 TCGA-EE-A3AF-06 19 43430025 43430025 G A PSG7 Silent p.I381I 0.32 TCGA-EE-A3AF-06 19 43864436 43864436 G A CD177 3'UTR 0.24 TCGA-EE-A3AF-06 19 44097396 44097396 C T IRGQ Silent p.E218E 0.36 TCGA-EE-A3AF-06 19 44237000 44237000 G C SMG9 Intron 0.42 TCGA-EE-A3AF-06 19 44739315 44739315 C T ZNF227 Silent p.P244P 0.20 TCGA-EE-A3AF-06 19 45157173 45157173 C T PVR Silent p.P243P 0.34 TCGA-EE-A3AF-06 19 45541147 45541147 C T RELB 3'UTR 0.25 TCGA-EE-A3AF-06 19 45541148 45541148 C T RELB 3'UTR 0.26 TCGA-EE-A3AF-06 19 45766591 45766591 C T MARK4 Silent p.V107V 0.31 TCGA-EE-A3AF-06 19 47570766 47570766 G A ZC3H4 Missense_Mutation p.P920L 0.30 unknown(0) TCGA-EE-A3AF-06 19 47570767 47570767 G A ZC3H4 Missense_Mutation p.P920S 0.30 unknown(0) TCGA-EE-A3AF-06 19 49526155 49526155 G A CGB Silent p.I162I 0.58 TCGA-EE-A3AF-06 19 49658453 49658453 C T HRC Nonsense_Mutation p.W14* 0.45 TCGA-EE-A3AF-06 19 50335672 50335672 C T MED25 Silent p.F494F 0.24 TCGA-EE-A3AF-06 19 51190034 51190034 C T SHANK1 Missense_Mutation p.E809K 0.34 possibly_damaging(0.636) TCGA-EE-A3AF-06 19 51190035 51190035 C T SHANK1 Missense_Mutation p.M808I 0.34 benign(0.107) TCGA-EE-A3AF-06 19 51602387 51602387 G A CTU1 Missense_Mutation p.A173V 0.60 deleterious(0) probably_damaging(0.92) TCGA-EE-A3AF-06 19 51671441 51671441 G A CTD-3187F8.14 Intron 0.31 TCGA-EE-A3AF-06 19 52033702 52033702 C T SIGLEC6 Missense_Mutation p.G248E 0.32 deleterious(0.05) probably_damaging(0.927) TCGA-EE-A3AF-06 19 52130825 52130825 C T SIGLEC5 Nonsense_Mutation p.W391* 0.37 TCGA-EE-A3AF-06 19 52918407 52918407 G A ZNF528 Missense_Mutation p.G101E 0.31 tolerated(0.14) benign(0.009) TCGA-EE-A3AF-06 19 53303783 53303783 A T ZNF28 Missense_Mutation p.Y439N 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 19 54742820 54742820 C T LILRA6 3'UTR 0.19 TCGA-EE-A3AF-06 19 55049201 55049201 C T KIR3DX1 Silent p.L322L 0.33 TCGA-EE-A3AF-06 19 55107260 55107260 C T LILRA1 Missense_Mutation p.P273L 0.41 tolerated(0.08) benign(0.139) TCGA-EE-A3AF-06 19 55143446 55143446 A T LILRB1 Missense_Mutation p.N140I 0.38 deleterious(0) benign(0.225) TCGA-EE-A3AF-06 19 55423543 55423543 T G NCR1 Silent p.T230T 0.30 TCGA-EE-A3AF-06 19 55450786 55450786 G A NLRP7 Silent p.I467I 0.39 TCGA-EE-A3AF-06 19 55740026 55740026 C T AC010327.2 3'UTR 0.33 TCGA-EE-A3AF-06 19 55913083 55913083 G A UBE2S Silent p.N130N 0.50 TCGA-EE-A3AF-06 19 56539478 56539478 C T NLRP5 Missense_Mutation p.H627Y 0.42 deleterious(0.01) benign(0.242) TCGA-EE-A3AF-06 19 57133296 57133296 A T ZNF71 Missense_Mutation p.Y214F 0.28 tolerated(0.22) probably_damaging(0.993) TCGA-EE-A3AF-06 19 57325061 57325061 C T PEG3 Silent p.Q1583Q 0.30 TCGA-EE-A3AF-06 19 5908851 5908851 C T VMAC Nonsense_Mutation p.Q70* 0.34 TCGA-EE-A3AF-06 19 6495192 6495192 C T TUBB4A Missense_Mutation p.E440K 0.30 tolerated_low_confidence(0.21) unknown(0) TCGA-EE-A3AF-06 19 7600813 7600813 C T PNPLA6 Missense_Mutation p.P56S 0.33 tolerated_low_confidence(0.16) probably_damaging(0.986) TCGA-EE-A3AF-06 19 7812351 7812351 C T CD209 Splice_Site p.X16_splice 0.33 TCGA-EE-A3AF-06 19 815758 815758 G A LPPR3 Missense_Mutation p.R57C 0.40 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AF-06 19 9056299 9056299 C T MUC16 Missense_Mutation p.D10383N 0.33 benign(0.043) TCGA-EE-A3AF-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.34 unknown(0) TCGA-EE-A3AF-06 1 100614519 100614519 C T LRRC39 3'UTR 0.29 TCGA-EE-A3AF-06 1 108690945 108690945 A G SLC25A24 Missense_Mutation p.S296P 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3AF-06 1 110085755 110085755 G A GPR61 Silent p.R37R 0.33 TCGA-EE-A3AF-06 1 110145911 110145911 T C GNAT2 3'UTR 0.25 TCGA-EE-A3AF-06 1 112524979 112524979 G A KCND3 Missense_Mutation p.L124F 0.36 deleterious(0.04) benign(0.003) TCGA-EE-A3AF-06 1 113253642 113253642 C T PPM1J Silent p.G366G 0.31 TCGA-EE-A3AF-06 1 114193690 114193690 C T MAGI3 Missense_Mutation p.R768C 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 114372627 114372627 G A PTPN22 Missense_Mutation p.P693L 0.46 deleterious(0.02) benign(0.162) TCGA-EE-A3AF-06 1 114423762 114423762 C T BCL2L15 Missense_Mutation p.E159K 0.25 tolerated(0.12) benign(0.046) TCGA-EE-A3AF-06 1 114437756 114437756 C T AP4B1 Silent p.T717T 0.27 TCGA-EE-A3AF-06 1 115218214 115218214 G A AMPD1 Missense_Mutation p.P572L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 115276669 115276669 C T CSDE1 Missense_Mutation p.G264S 0.32 tolerated(0.2) probably_damaging(0.991) TCGA-EE-A3AF-06 1 115276670 115276670 C T CSDE1 Silent p.K263K 0.32 TCGA-EE-A3AF-06 1 116666729 116666729 G A MAB21L3 Missense_Mutation p.G78S 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AF-06 1 116676002 116676002 G A MAB21L3 3'UTR 0.44 TCGA-EE-A3AF-06 1 119936554 119936554 C G HAO2 3'UTR 0.44 TCGA-EE-A3AF-06 1 12157167 12157167 C T TNFRSF8 Missense_Mutation p.P54L 0.56 tolerated(0.08) benign(0.019) TCGA-EE-A3AF-06 1 12339685 12339685 G T VPS13D Missense_Mutation p.G1527V 0.67 probably_damaging(0.999) TCGA-EE-A3AF-06 1 1372758 1372758 C T VWA1 Silent p.F175F 0.60 TCGA-EE-A3AF-06 1 144813797 144813797 C T NBPF9 Silent p.F89F 0.31 TCGA-EE-A3AF-06 1 144946721 144946721 C T PDE4DIP Silent p.Q180Q 0.11 TCGA-EE-A3AF-06 1 150234998 150234998 T G CA14 Silent p.A158A 0.45 TCGA-EE-A3AF-06 1 151491260 151491260 G A CGN Missense_Mutation p.G89R 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3AF-06 1 151773494 151773494 G A LINGO4 Missense_Mutation p.R563W 0.28 deleterious(0) benign(0.249) TCGA-EE-A3AF-06 1 152127305 152127305 C T RPTN Missense_Mutation p.R757Q 0.35 tolerated(1) benign(0.001) TCGA-EE-A3AF-06 1 152770517 152770517 C T LCE1D Missense_Mutation p.R83C 0.57 unknown(0) TCGA-EE-A3AF-06 1 153309716 153309716 G A PGLYRP4 Missense_Mutation p.S295F 0.45 deleterious(0.04) benign(0.055) TCGA-EE-A3AF-06 1 155931579 155931579 G T ARHGEF2 Missense_Mutation p.N447K 0.29 tolerated(0.09) benign(0.031) TCGA-EE-A3AF-06 1 156626126 156626126 G A BCAN Silent p.E665E 0.28 TCGA-EE-A3AF-06 1 156849841 156849841 C T NTRK1 Silent p.I699I 0.30 TCGA-EE-A3AF-06 1 157669493 157669493 C T FCRL3 Missense_Mutation p.R14K 0.29 tolerated(0.36) benign(0.34) TCGA-EE-A3AF-06 1 158224439 158224439 G A CD1A 5'UTR 0.36 TCGA-EE-A3AF-06 1 158324289 158324289 G A CD1E Missense_Mutation p.D61N 0.39 deleterious(0.03) possibly_damaging(0.721) TCGA-EE-A3AF-06 1 158368890 158368890 G A OR10T2 Missense_Mutation p.R123C 0.28 deleterious(0.02) benign(0.04) TCGA-EE-A3AF-06 1 158653284 158653284 C T SPTA1 Silent p.G89G 0.38 TCGA-EE-A3AF-06 1 160011221 160011221 C T KCNJ10 Missense_Mutation p.E368K 0.26 tolerated(0.13) benign(0.314) TCGA-EE-A3AF-06 1 160106050 160106050 C T ATP1A2 Missense_Mutation p.S818F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 160124954 160124954 C T ATP1A4 Silent p.S109S 0.46 TCGA-EE-A3AF-06 1 160465994 160465994 G A SLAMF6 Missense_Mutation p.P80L 0.44 tolerated(0.15) possibly_damaging(0.903) TCGA-EE-A3AF-06 1 161017387 161017387 C T ARHGAP30 3'UTR 0.38 TCGA-EE-A3AF-06 1 161145604 161145604 G A B4GALT3 Missense_Mutation p.L83F 0.38 tolerated(0.27) benign(0.002) TCGA-EE-A3AF-06 1 162567609 162567609 C T UAP1 Silent p.I462I 0.28 TCGA-EE-A3AF-06 1 162567610 162567610 C T UAP1 Nonsense_Mutation p.Q463* 0.28 TCGA-EE-A3AF-06 1 16378204 16378204 G A CLCNKB Splice_Site p.X433_splice 0.57 TCGA-EE-A3AF-06 1 167097200 167097200 G A DUSP27 Silent p.T944T 0.34 TCGA-EE-A3AF-06 1 167097201 167097201 G A DUSP27 Missense_Mutation p.E945K 0.35 deleterious(0.01) possibly_damaging(0.848) TCGA-EE-A3AF-06 1 167849779 167849779 C T ADCY10 Silent p.L363L 0.35 TCGA-EE-A3AF-06 1 168274388 168274388 G A TBX19 Silent p.Q290Q 0.32 TCGA-EE-A3AF-06 1 168274397 168274397 C T TBX19 Silent p.Y293Y 0.29 TCGA-EE-A3AF-06 1 16891330 16891330 C T NBPF1 Missense_Mutation p.E1050K 0.03 deleterious_low_confidence(0.01) benign(0.039) TCGA-EE-A3AF-06 1 16907419 16907419 G A NBPF1 Missense_Mutation p.P471L 0.12 tolerated(0.33) possibly_damaging(0.614) TCGA-EE-A3AF-06 1 169293677 169293677 C T NME7 Missense_Mutation p.R22Q 0.26 deleterious(0.03) possibly_damaging(0.718) TCGA-EE-A3AF-06 1 169572414 169572414 C T SELP Missense_Mutation p.G519R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 169677600 169677600 C T SELL Missense_Mutation p.D157N 0.43 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AF-06 1 172501872 172501872 G A SUCO 5'Flank 0.33 TCGA-EE-A3AF-06 1 172544683 172544683 C T SUCO Silent p.L395L 0.42 TCGA-EE-A3AF-06 1 175086135 175086135 C T TNN Missense_Mutation p.S727F 0.31 deleterious(0.01) probably_damaging(0.939) TCGA-EE-A3AF-06 1 175335019 175335019 G A TNR Missense_Mutation p.A770V 0.37 deleterious(0.03) probably_damaging(0.937) TCGA-EE-A3AF-06 1 176738853 176738853 C T PAPPA2 Silent p.S1478S 0.39 TCGA-EE-A3AF-06 1 17698840 17698840 T G PADI6 RNA 0.45 TCGA-EE-A3AF-06 1 179052082 179052082 C T TOR3A Silent p.R89R 0.33 TCGA-EE-A3AF-06 1 179339203 179339203 G A AXDND1 Missense_Mutation p.G122R 0.44 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AF-06 1 183253165 183253165 G A NMNAT2 Missense_Mutation p.A180V 0.41 tolerated(0.13) probably_damaging(0.996) TCGA-EE-A3AF-06 1 183536087 183536087 C T NCF2 Missense_Mutation p.E298K 0.51 deleterious(0) probably_damaging(0.925) TCGA-EE-A3AF-06 1 186919842 186919842 G A PLA2G4A Missense_Mutation p.E440K 0.37 tolerated(0.14) probably_damaging(0.917) TCGA-EE-A3AF-06 1 198492547 198492547 G A ATP6V1G3 Missense_Mutation p.H111Y 0.17 deleterious(0) possibly_damaging(0.821) TCGA-EE-A3AF-06 1 198668772 198668772 A G PTPRC Silent p.T126T 0.32 TCGA-EE-A3AF-06 1 200613540 200613540 C T DDX59 Missense_Mutation p.G568R 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A3AF-06 1 200867496 200867496 C T C1orf106 5'UTR 0.39 TCGA-EE-A3AF-06 1 200974769 200974769 G A KIF21B Silent p.T167T 0.34 TCGA-EE-A3AF-06 1 201035038 201035038 G A CACNA1S Silent p.T927T 0.23 TCGA-EE-A3AF-06 1 201035039 201035039 G A CACNA1S Missense_Mutation p.T927I 0.23 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AF-06 1 201081522 201081522 C T CACNA1S 5'UTR 0.33 TCGA-EE-A3AF-06 1 202411586 202411586 T G PPP1R12B Missense_Mutation p.V518G 0.40 tolerated(0.06) benign(0.069) TCGA-EE-A3AF-06 1 203453084 203453084 C T PRELP Missense_Mutation p.P258S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 203453085 203453085 C T PRELP Missense_Mutation p.P258L 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 203667458 203667458 C T ATP2B4 Missense_Mutation p.R123C 0.33 tolerated(0.11) possibly_damaging(0.888) TCGA-EE-A3AF-06 1 204438557 204438557 C T PIK3C2B Missense_Mutation p.G125E 0.43 tolerated_low_confidence(0.19) benign(0.001) TCGA-EE-A3AF-06 1 206811089 206811089 C T DYRK3 Missense_Mutation p.P58S 0.38 tolerated_low_confidence(0.35) benign(0.105) TCGA-EE-A3AF-06 1 207110999 207110999 C T PIGR Silent p.R162R 0.34 TCGA-EE-A3AF-06 1 20964371 20964371 C T PINK1 Missense_Mutation p.P142S 0.42 deleterious(0.04) benign(0.213) TCGA-EE-A3AF-06 1 216371810 216371810 C T USH2A Missense_Mutation p.E1310K 0.36 benign(0.049) TCGA-EE-A3AF-06 1 220219733 220219733 C T EPRS 5'UTR 0.29 TCGA-EE-A3AF-06 1 220826538 220826538 G A MARK1 Missense_Mutation p.R611Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 1 223116562 223116562 C T DISP1 Missense_Mutation p.P133S 0.38 tolerated(0.22) possibly_damaging(0.87) TCGA-EE-A3AF-06 1 224002017 224002017 G A TP53BP2 Missense_Mutation p.L72F 0.35 deleterious(0) possibly_damaging(0.827) TCGA-EE-A3AF-06 1 224553590 224553590 C T CNIH4 Missense_Mutation p.P50S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 224553591 224553591 C T CNIH4 Missense_Mutation p.P50L 0.36 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AF-06 1 228596894 228596894 C T TRIM17 Missense_Mutation p.E288K 0.39 tolerated(0.08) possibly_damaging(0.498) TCGA-EE-A3AF-06 1 230928633 230928633 C T CAPN9 Missense_Mutation p.T610I 0.32 deleterious(0.01) possibly_damaging(0.513) TCGA-EE-A3AF-06 1 231056273 231056273 G A TTC13 Missense_Mutation p.L656F 0.30 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A3AF-06 1 231056274 231056274 G A TTC13 Silent p.D655D 0.30 TCGA-EE-A3AF-06 1 234563101 234563101 G A TARBP1 Silent p.N1095N 0.42 TCGA-EE-A3AF-06 1 240071997 240071997 G C CHRM3 Missense_Mutation p.D416H 0.44 tolerated(0.16) possibly_damaging(0.563) TCGA-EE-A3AF-06 1 240374485 240374485 G A FMN2 Missense_Mutation p.E1339K 0.26 benign(0.387) TCGA-EE-A3AF-06 1 240555833 240555833 G A FMN2 Silent p.E1627E 0.34 TCGA-EE-A3AF-06 1 240977012 240977012 C T RGS7 Missense_Mutation p.E288K 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3AF-06 1 247769793 247769793 G A OR2G3 Silent p.R302R 0.40 TCGA-EE-A3AF-06 1 247836067 247836067 C T OR13G1 Missense_Mutation p.G93S 0.43 deleterious(0.03) benign(0.031) TCGA-EE-A3AF-06 1 247921544 247921544 G A OR1C1 Silent p.L55L 0.43 TCGA-EE-A3AF-06 1 248308615 248308615 C T OR2M5 Missense_Mutation p.H56Y 0.31 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AF-06 1 24840953 24840953 G A RCAN3 Missense_Mutation p.E31K 0.36 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A3AF-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.32 deleterious(0.03) benign(0.232) TCGA-EE-A3AF-06 1 248616309 248616309 G A OR2T2 Missense_Mutation p.D71N 0.14 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 1 24981485 24981485 C T SRRM1 Missense_Mutation p.P394S 0.40 unknown(0) TCGA-EE-A3AF-06 1 25124273 25124273 C T CLIC4 Missense_Mutation p.S38F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 1 27106648 27106648 G A ARID1A Missense_Mutation p.G2087R 0.41 probably_damaging(0.96) TCGA-EE-A3AF-06 1 27106649 27106649 G A ARID1A Missense_Mutation p.G2087E 0.41 probably_damaging(0.997) TCGA-EE-A3AF-06 1 27158942 27158942 C T ZDHHC18 Missense_Mutation p.P114S 0.34 deleterious(0) possibly_damaging(0.792) TCGA-EE-A3AF-06 1 27158943 27158943 C T ZDHHC18 Missense_Mutation p.P114L 0.34 deleterious(0) possibly_damaging(0.792) TCGA-EE-A3AF-06 1 27662021 27662021 C T TMEM222 3'UTR 0.36 TCGA-EE-A3AF-06 1 27736314 27736314 G A WASF2 Missense_Mutation p.P404L 0.47 deleterious(0.01) benign(0.003) TCGA-EE-A3AF-06 1 28241086 28241086 T A RPA2 5'UTR 0.50 TCGA-EE-A3AF-06 1 29438901 29438901 G A EPB41 Missense_Mutation p.E813K 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 1 29611349 29611349 C T PTPRU Silent p.L762L 0.45 TCGA-EE-A3AF-06 1 33060667 33060667 G A ZBTB8A Missense_Mutation p.R279Q 0.38 benign(0.009) TCGA-EE-A3AF-06 1 33060668 33060668 G A ZBTB8A Silent p.R279R 0.38 TCGA-EE-A3AF-06 1 36068817 36068817 A G PSMB2 3'UTR 0.19 TCGA-EE-A3AF-06 1 36820960 36820960 G A STK40 Silent p.L139L 0.31 TCGA-EE-A3AF-06 1 36821031 36821031 G A STK40 Missense_Mutation p.R116C 0.34 tolerated(0.07) benign(0.067) TCGA-EE-A3AF-06 1 36821032 36821032 G A STK40 Silent p.D115D 0.34 TCGA-EE-A3AF-06 1 38330081 38330081 G A INPP5B Silent p.L843L 0.27 TCGA-EE-A3AF-06 1 44149373 44149373 T G KDM4A Missense_Mutation p.F585V 0.41 tolerated(0.51) benign(0.004) TCGA-EE-A3AF-06 1 44450559 44450559 G A B4GALT2 Missense_Mutation p.R220Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 1 46976783 46976783 C T DMBX1 Silent p.P170P 0.39 TCGA-EE-A3AF-06 1 47746767 47746767 A T STIL Missense_Mutation p.L455M 0.28 tolerated(0.08) probably_damaging(0.971) TCGA-EE-A3AF-06 1 51425473 51425473 T C FAF1 Missense_Mutation p.N4S 0.35 tolerated(0.22) benign(0.064) TCGA-EE-A3AF-06 1 53925647 53925647 C T DMRTB1 Missense_Mutation p.P174L 0.44 tolerated(0.65) benign(0.002) TCGA-EE-A3AF-06 1 54512978 54512978 C T TMEM59 Missense_Mutation p.G86E 0.44 tolerated(0.09) probably_damaging(0.94) TCGA-EE-A3AF-06 1 57481073 57481073 G T DAB1 Silent p.S309S 0.27 TCGA-EE-A3AF-06 1 59147533 59147533 G A MYSM1 Missense_Mutation p.P395S 0.42 tolerated(0.19) benign(0.389) TCGA-EE-A3AF-06 1 60324130 60324130 G A HOOK1 Missense_Mutation p.E425K 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 1 61554268 61554268 C T NFIA Missense_Mutation p.P204S 0.34 deleterious(0.03) benign(0.426) TCGA-EE-A3AF-06 1 62740442 62740442 G A KANK4 Missense_Mutation p.L112F 0.29 tolerated(0.71) benign(0.342) TCGA-EE-A3AF-06 1 67091554 67091554 C T SGIP1 Missense_Mutation p.A12V 0.34 tolerated(0.08) probably_damaging(0.97) TCGA-EE-A3AF-06 1 67147864 67147864 T C SGIP1 Missense_Mutation p.L376S 0.39 tolerated_low_confidence(0.15) probably_damaging(0.979) TCGA-EE-A3AF-06 1 67896100 67896100 C T SERBP1 5'Flank 0.43 TCGA-EE-A3AF-06 1 70687257 70687257 T C SRSF11 Intron 0.37 TCGA-EE-A3AF-06 1 7844950 7844950 G A PER3 Missense_Mutation p.E5K 0.73 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A3AF-06 1 7844970 7844970 A G PER3 Silent p.R11R 0.75 TCGA-EE-A3AF-06 1 82450271 82450271 G A LPHN2 Missense_Mutation p.R1079Q 0.32 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A3AF-06 1 8390873 8390873 G A SLC45A1 Silent p.L440L 0.51 TCGA-EE-A3AF-06 1 89732744 89732744 G A GBP5 Missense_Mutation p.P174L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 89732745 89732745 G A GBP5 Missense_Mutation p.P174S 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 1 90050181 90050181 C T LRRC8B Silent p.L658L 0.28 TCGA-EE-A3AF-06 1 94473190 94473190 C T ABCA4 Missense_Mutation p.S2002N 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AF-06 1 99771591 99771591 G A LPPR4 Missense_Mutation p.M439I 0.40 tolerated(0.05) benign(0.032) TCGA-EE-A3AF-06 20 10030640 10030640 G T ANKEF1 Nonsense_Mutation p.E475* 0.43 TCGA-EE-A3AF-06 20 10602039 10602039 C T SLX4IP Silent p.L161L 0.28 TCGA-EE-A3AF-06 20 1458921 1458921 C T SIRPB2 Silent p.L261L 0.36 TCGA-EE-A3AF-06 20 18505091 18505091 C T SEC23B Silent p.S127S 0.33 TCGA-EE-A3AF-06 20 18505092 18505092 C T SEC23B Missense_Mutation p.P128S 0.33 deleterious(0.02) possibly_damaging(0.728) TCGA-EE-A3AF-06 20 18724816 18724816 G A DTD1 Missense_Mutation p.E184K 0.38 tolerated_low_confidence(0.24) benign(0.007) TCGA-EE-A3AF-06 20 19566105 19566105 G A SLC24A3 Missense_Mutation p.D177N 0.35 tolerated(0.05) probably_damaging(1) TCGA-EE-A3AF-06 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.31 deleterious(0.03) benign(0.256) TCGA-EE-A3AF-06 20 20209001 20209001 C T C20orf26 Silent p.L681L 0.37 TCGA-EE-A3AF-06 20 24524084 24524084 G A SYNDIG1 Silent p.E117E 0.30 TCGA-EE-A3AF-06 20 24646275 24646275 G A SYNDIG1 3'UTR 0.45 TCGA-EE-A3AF-06 20 2816841 2816841 G A PCED1A Missense_Mutation p.P321S 0.31 tolerated(0.19) probably_damaging(0.998) TCGA-EE-A3AF-06 20 30585092 30585092 G A XKR7 Silent p.R524R 0.25 TCGA-EE-A3AF-06 20 31767457 31767457 C T BPIFA2 Silent p.V231V 0.42 TCGA-EE-A3AF-06 20 31889060 31889060 G A BPIFB1 Missense_Mutation p.G257R 0.34 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AF-06 20 31996280 31996282 ACC TT SNTA1 3'UTR 0.73 TCGA-EE-A3AF-06 20 3202495 3202495 C T ITPA Silent p.I140I 0.38 TCGA-EE-A3AF-06 20 32379014 32379014 C T ZNF341 Silent p.A745A 0.38 TCGA-EE-A3AF-06 20 35884814 35884814 G A GHRH Silent p.I57I 0.42 TCGA-EE-A3AF-06 20 36846738 36846738 G A KIAA1755 Missense_Mutation p.R863W 0.48 tolerated(0.09) benign(0.025) TCGA-EE-A3AF-06 20 40733224 40733224 G A PTPRT Silent p.I1175I 0.38 TCGA-EE-A3AF-06 20 42168927 42168927 C T L3MBTL1 Silent p.V748V 0.26 TCGA-EE-A3AF-06 20 43882316 43882316 T A SLPI Missense_Mutation p.K48N 0.35 tolerated(0.32) possibly_damaging(0.821) TCGA-EE-A3AF-06 20 44170686 44170686 G A EPPIN Intron 0.17 TCGA-EE-A3AF-06 20 44879780 44879780 C T CDH22 Missense_Mutation p.D52N 0.35 tolerated(0.18) possibly_damaging(0.811) TCGA-EE-A3AF-06 20 46279928 46279928 A C NCOA3 Missense_Mutation p.N1285T 0.36 deleterious(0) possibly_damaging(0.78) TCGA-EE-A3AF-06 20 47244112 47244112 C T PREX1 Silent p.K1637K 0.33 TCGA-EE-A3AF-06 20 52645135 52645135 G A BCAS1 Silent p.L173L 0.41 TCGA-EE-A3AF-06 20 56140566 56140566 C T PCK1 Silent p.F525F 0.32 TCGA-EE-A3AF-06 20 58467232 58467232 G A SYCP2 Missense_Mutation p.S726L 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 20 58514302 58514302 G A PPP1R3D Missense_Mutation p.P229S 0.34 tolerated(0.92) benign(0.004) TCGA-EE-A3AF-06 20 58514303 58514303 G A PPP1R3D Silent p.G228G 0.34 TCGA-EE-A3AF-06 20 61453960 61453960 C T COL9A3 Silent p.L165L 0.29 TCGA-EE-A3AF-06 20 61453961 61453961 C T COL9A3 Missense_Mutation p.P166S 0.29 tolerated(0.34) unknown(0) TCGA-EE-A3AF-06 20 61981553 61981553 G A CHRNA4 Missense_Mutation p.P404S 0.29 tolerated(0.31) benign(0.029) TCGA-EE-A3AF-06 20 62168489 62168489 C A PTK6 Missense_Mutation p.G60V 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 20 62236232 62236232 C T GMEB2 Intron 0.36 TCGA-EE-A3AF-06 20 826242 826242 C T FAM110A Silent p.P265P 0.37 TCGA-EE-A3AF-06 20 9546702 9546702 G A PAK7 Silent p.V440V 0.43 TCGA-EE-A3AF-06 21 10863030 10863030 A G IGHV1OR21-1 Missense_Mutation p.D109G 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 21 10933861 10933861 C T TPTE Missense_Mutation p.G340R 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-EE-A3AF-06 21 17196463 17196463 C T USP25 Missense_Mutation p.P396S 0.33 tolerated(0.07) possibly_damaging(0.876) TCGA-EE-A3AF-06 21 18933054 18933054 C T CXADR Silent p.A202A 0.40 TCGA-EE-A3AF-06 21 34099161 34099161 G A SYNJ1 Missense_Mutation p.P55S 0.34 tolerated(0.09) benign(0.287) TCGA-EE-A3AF-06 21 36043035 36043035 G A CLIC6 Missense_Mutation p.E450K 0.18 tolerated(0.07) benign(0.331) TCGA-EE-A3AF-06 21 39086598 39086598 G A KCNJ6 Missense_Mutation p.P288S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 21 41424029 41424029 G A DSCAM Missense_Mutation p.R1681C 0.39 deleterious(0) possibly_damaging(0.856) TCGA-EE-A3AF-06 21 42064773 42064773 G A DSCAM Silent p.V157V 0.33 TCGA-EE-A3AF-06 21 43327228 43327228 G A C2CD2 Silent p.P397P 0.25 TCGA-EE-A3AF-06 21 43327229 43327229 G A C2CD2 Missense_Mutation p.P397L 0.26 tolerated(0.18) benign(0.006) TCGA-EE-A3AF-06 21 44837584 44837584 G A SIK1 Silent p.I605I 0.35 TCGA-EE-A3AF-06 21 45666243 45666243 T G DNMT3L 3'UTR 0.42 TCGA-EE-A3AF-06 21 47699945 47699945 G A MCM3AP Silent p.A543A 0.32 TCGA-EE-A3AF-06 21 47699946 47699946 G A MCM3AP Missense_Mutation p.A543V 0.32 deleterious(0.02) benign(0.1) TCGA-EE-A3AF-06 22 18304888 18304888 A C MICAL3 Missense_Mutation p.L1119W 0.35 possibly_damaging(0.594) TCGA-EE-A3AF-06 22 19124869 19124869 G A DGCR14 Silent p.P334P 0.32 TCGA-EE-A3AF-06 22 19344421 19344421 G A HIRA Silent p.L796L 0.34 TCGA-EE-A3AF-06 22 22843053 22843053 G A ZNF280B Missense_Mutation p.T224I 0.35 deleterious(0.03) benign(0.196) TCGA-EE-A3AF-06 22 23162212 23162212 C T IGLV3-9 Missense_Mutation p.A102V 0.30 deleterious(0.01) benign(0.324) TCGA-EE-A3AF-06 22 23915530 23915530 G A IGLL1 Missense_Mutation p.R189C 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.762) TCGA-EE-A3AF-06 22 23915531 23915531 G A IGLL1 Silent p.S188S 0.36 TCGA-EE-A3AF-06 22 29628340 29628340 C T EMID1 Missense_Mutation p.P258S 0.50 tolerated(0.05) possibly_damaging(0.782) TCGA-EE-A3AF-06 22 30950952 30950952 G A GAL3ST1 Silent p.F420F 0.40 TCGA-EE-A3AF-06 22 31008905 31008905 C T TCN2 Silent p.S101S 0.38 TCGA-EE-A3AF-06 22 31286931 31286931 G A OSBP2 Missense_Mutation p.D614N 0.36 deleterious(0) possibly_damaging(0.853) TCGA-EE-A3AF-06 22 33777977 33777977 G A LARGE Silent p.P353P 0.35 TCGA-EE-A3AF-06 22 35943045 35943045 C G RASD2 Silent p.R63R 0.34 TCGA-EE-A3AF-06 22 37407110 37407110 G A TST Silent p.P284P 0.26 TCGA-EE-A3AF-06 22 38046701 38046701 C T SH3BP1 Missense_Mutation p.P523S 0.26 tolerated(0.07) benign(0.004) TCGA-EE-A3AF-06 22 38211288 38211288 G A GCAT Splice_Site p.X270_splice 0.44 TCGA-EE-A3AF-06 22 38211686 38211686 G A GCAT Silent p.G303G 0.50 TCGA-EE-A3AF-06 22 39387400 39387400 C T APOBEC3B Missense_Mutation p.P263S 0.27 tolerated(0.79) benign(0.004) TCGA-EE-A3AF-06 22 39966888 39966888 G A CACNA1I Missense_Mutation p.G44E 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.766) TCGA-EE-A3AF-06 22 40661873 40661873 C T TNRC6B Missense_Mutation p.P547S 0.33 tolerated(0.14) benign(0.081) TCGA-EE-A3AF-06 22 46684422 46684422 C T TTC38 Missense_Mutation p.S340F 0.36 tolerated(0.67) benign(0.002) TCGA-EE-A3AF-06 22 50167905 50167905 G A BRD1 Silent p.T1051T 0.35 TCGA-EE-A3AF-06 22 50167906 50167906 G A BRD1 Missense_Mutation p.T1051I 0.35 tolerated(0.06) benign(0.001) TCGA-EE-A3AF-06 22 50877130 50877130 G A PPP6R2 Silent p.G663G 0.39 TCGA-EE-A3AF-06 2 102625004 102625004 C T IL1R2 5'UTR 0.45 TCGA-EE-A3AF-06 2 109513555 109513555 C T EDAR Silent p.R385R 0.70 TCGA-EE-A3AF-06 2 11733049 11733049 C T GREB1 Missense_Mutation p.S498F 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-EE-A3AF-06 2 11773139 11773139 C T GREB1 Silent p.S1647S 0.30 TCGA-EE-A3AF-06 2 120834608 120834608 C T EPB41L5 Silent p.F189F 0.51 TCGA-EE-A3AF-06 2 130877694 130877694 C T POTEF Missense_Mutation p.R132K 0.53 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-EE-A3AF-06 2 133540580 133540580 C T NCKAP5 Missense_Mutation p.M1268I 0.54 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 2 135744915 135744915 C T MAP3K19 Silent p.K509K 0.58 TCGA-EE-A3AF-06 2 149528724 149528724 T G EPC2 Missense_Mutation p.N496K 0.49 tolerated(0.17) benign(0.066) TCGA-EE-A3AF-06 2 152507370 152507370 T C NEB Silent p.Q2315Q 0.57 TCGA-EE-A3AF-06 2 152520169 152520169 C T NEB Missense_Mutation p.E1886K 0.69 benign(0.358) TCGA-EE-A3AF-06 2 15470890 15470890 C T NBAS Splice_Site p.X1394_splice 0.38 TCGA-EE-A3AF-06 2 159523019 159523019 C T PKP4 Missense_Mutation p.S891F 0.51 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AF-06 2 160245888 160245888 G A BAZ2B Missense_Mutation p.P1062S 0.59 probably_damaging(0.999) TCGA-EE-A3AF-06 2 163029330 163029330 G A FAP Silent p.F724F 0.47 TCGA-EE-A3AF-06 2 166611212 166611212 A G GALNT3 Silent p.C517C 0.72 TCGA-EE-A3AF-06 2 167134768 167134768 G A SCN9A Missense_Mutation p.P789L 0.70 deleterious(0) possibly_damaging(0.906) TCGA-EE-A3AF-06 2 167327137 167327137 G A SCN7A Missense_Mutation p.P218S 0.60 tolerated(1) benign(0.231) TCGA-EE-A3AF-06 2 167334152 167334152 C T SCN7A Missense_Mutation p.E19K 0.31 tolerated(0.19) benign(0.025) TCGA-EE-A3AF-06 2 168101889 168101889 G A XIRP2 Silent p.G1329G 0.73 TCGA-EE-A3AF-06 2 169826677 169826677 G A ABCB11 Nonsense_Mutation p.Q563* 0.66 TCGA-EE-A3AF-06 2 171371479 171371479 G A MYO3B Missense_Mutation p.G1140D 0.50 tolerated_low_confidence(0.65) benign(0) TCGA-EE-A3AF-06 2 172582157 172582157 C T DYNC1I2 Missense_Mutation p.P181S 0.63 tolerated(0.46) benign(0.004) TCGA-EE-A3AF-06 2 177017652 177017652 G A HOXD4 Silent p.T250T 0.49 TCGA-EE-A3AF-06 2 177034231 177034231 C T HOXD3 Missense_Mutation p.S130L 0.36 tolerated(0.07) possibly_damaging(0.587) TCGA-EE-A3AF-06 2 179475812 179475812 G A TTN Missense_Mutation p.P17015L 0.51 TCGA-EE-A3AF-06 2 179583125 179583125 C T TTN Silent p.E8236E 0.40 TCGA-EE-A3AF-06 2 183099206 183099206 G A PDE1A Missense_Mutation p.H140Y 0.50 tolerated(0.05) benign(0.377) TCGA-EE-A3AF-06 2 191302198 191302198 C T MFSD6 Silent p.L481L 0.55 TCGA-EE-A3AF-06 2 196791160 196791160 A G DNAH7 Missense_Mutation p.M1201T 0.79 tolerated(0.52) benign(0) TCGA-EE-A3AF-06 2 203806695 203806695 G A CARF Missense_Mutation p.V24I 0.58 tolerated_low_confidence(0.22) benign(0.079) TCGA-EE-A3AF-06 2 21250765 21250765 G A APOB Missense_Mutation p.P668S 0.36 probably_damaging(0.999) TCGA-EE-A3AF-06 2 212587144 212587144 C A ERBB4 Missense_Mutation p.G286V 0.48 deleterious(0) benign(0.397) TCGA-EE-A3AF-06 2 212587145 212587145 C T ERBB4 Missense_Mutation p.G286R 0.46 deleterious(0) possibly_damaging(0.678) TCGA-EE-A3AF-06 2 216274369 216274369 G A FN1 Missense_Mutation p.S739F 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 2 217124116 217124116 G A MARCH4 Silent p.I384I 0.62 TCGA-EE-A3AF-06 2 219492943 219492943 G A PLCD4 Missense_Mutation p.G322R 0.62 deleterious(0.05) possibly_damaging(0.585) TCGA-EE-A3AF-06 2 219693282 219693282 C T PRKAG3 Silent p.R225R 0.46 TCGA-EE-A3AF-06 2 219693283 219693283 C T PRKAG3 Missense_Mutation p.R225Q 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AF-06 2 228142233 228142233 C T COL4A3 Missense_Mutation p.P697S 0.59 unknown(0) TCGA-EE-A3AF-06 2 231090546 231090546 C T SP140 5'UTR 0.56 TCGA-EE-A3AF-06 2 232326725 232326725 C T NCL Missense_Mutation p.V47I 0.47 unknown(0) TCGA-EE-A3AF-06 2 234669350 234669350 C T UGT1A8 Intron 0.54 TCGA-EE-A3AF-06 2 237285763 237285763 T C IQCA1 Missense_Mutation p.N515S 0.54 tolerated(0.37) benign(0.004) TCGA-EE-A3AF-06 2 240036880 240036881 CC - HDAC4 Frame_Shift_Del p.E549Gfs*15 0.41 TCGA-EE-A3AF-06 2 242004792 242004792 G A SNED1 Missense_Mutation p.G931S 0.61 tolerated(0.08) benign(0.07) TCGA-EE-A3AF-06 2 242758271 242758271 C T NEU4 Missense_Mutation p.S464F 0.59 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AF-06 2 27001403 27001403 C T SLC35F6 3'UTR 0.32 TCGA-EE-A3AF-06 2 27447254 27447254 C T CAD Missense_Mutation p.P384S 0.34 tolerated(0.25) benign(0.04) TCGA-EE-A3AF-06 2 27726415 27726415 C T GCKR Nonsense_Mutation p.R227* 0.41 TCGA-EE-A3AF-06 2 29294885 29294885 C T C2orf71 Missense_Mutation p.G748E 0.36 tolerated(0.27) benign(0.022) TCGA-EE-A3AF-06 2 33540274 33540274 G A LTBP1 Missense_Mutation p.G1223D 0.36 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AF-06 2 37395083 37395083 C T SULT6B1 Missense_Mutation p.G265S 0.33 deleterious(0.03) benign(0.01) TCGA-EE-A3AF-06 2 45829063 45829063 G A SRBD1 Silent p.V80V 0.40 TCGA-EE-A3AF-06 2 46607833 46607833 C A EPAS1 Silent p.P674P 0.20 TCGA-EE-A3AF-06 2 46607834 46607834 C T EPAS1 Missense_Mutation p.H675Y 0.21 deleterious(0.02) benign(0.209) TCGA-EE-A3AF-06 2 46739710 46739710 T C ATP6V1E2 Silent p.Q47Q 0.36 TCGA-EE-A3AF-06 2 48915500 48915500 C T LHCGR Missense_Mutation p.R479Q 0.45 tolerated(0.21) benign(0.192) TCGA-EE-A3AF-06 2 50780024 50780024 G A NRXN1 Missense_Mutation p.P527L 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 2 54153116 54153116 G A PSME4 Silent p.F546F 0.34 TCGA-EE-A3AF-06 2 56420542 56420542 C T CCDC85A Missense_Mutation p.P403S 0.40 deleterious(0.03) benign(0.004) TCGA-EE-A3AF-06 2 60773247 60773247 C T BCL11A Missense_Mutation p.D82N 0.39 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AF-06 2 61149089 61149089 C T REL Missense_Mutation p.P427S 0.36 tolerated(0.19) benign(0.014) TCGA-EE-A3AF-06 2 69207869 69207869 C T GKN1 Silent p.L172L 0.43 TCGA-EE-A3AF-06 2 71044000 71044000 A G CLEC4F Silent p.S171S 0.35 TCGA-EE-A3AF-06 2 71337017 71337017 G A MCEE 3'UTR 0.35 TCGA-EE-A3AF-06 2 71709086 71709086 G A DYSF Silent p.T75T 0.29 TCGA-EE-A3AF-06 2 73675962 73675962 C T ALMS1 Missense_Mutation p.P769S 0.28 possibly_damaging(0.813) TCGA-EE-A3AF-06 2 74883773 74883773 C T SEMA4F Silent p.F86F 0.33 TCGA-EE-A3AF-06 2 75116533 75116533 G A HK2 Missense_Mutation p.R846Q 0.51 deleterious(0.05) possibly_damaging(0.864) TCGA-EE-A3AF-06 2 79878678 79878678 G A CTNNA2 Intron 0.34 TCGA-EE-A3AF-06 2 88885506 88885506 G A EIF2AK3 Silent p.L501L 0.36 TCGA-EE-A3AF-06 2 89416905 89416905 G A IGKV1-17 Silent p.F93F 0.24 TCGA-EE-A3AF-06 2 89475818 89475818 T A IGKV2-24 Missense_Mutation p.Q118H 0.54 tolerated(1) benign(0.003) TCGA-EE-A3AF-06 2 90122061 90122061 C T IGKV1D-17 Silent p.F93F 0.13 TCGA-EE-A3AF-06 2 90122116 90122116 C T IGKV1D-17 Nonsense_Mutation p.Q112* 0.34 TCGA-EE-A3AF-06 2 9541480 9541480 G A ASAP2 Silent p.E967E 0.38 TCGA-EE-A3AF-06 2 9541481 9541481 G A ASAP2 Missense_Mutation p.G968R 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 2 96689735 96689735 G A GPAT2 Missense_Mutation p.S611F 0.67 tolerated(0.05) possibly_damaging(0.683) TCGA-EE-A3AF-06 2 98851177 98851177 G A VWA3B Missense_Mutation p.R792K 0.61 tolerated(0.39) benign(0.005) TCGA-EE-A3AF-06 3 100174838 100174838 C T LNP1 3'UTR 0.33 TCGA-EE-A3AF-06 3 100964916 100964916 C T IMPG2 Missense_Mutation p.D425N 0.33 deleterious(0.02) possibly_damaging(0.884) TCGA-EE-A3AF-06 3 101572057 101572057 C T NFKBIZ Silent p.P229P 0.31 TCGA-EE-A3AF-06 3 107798844 107798844 G A CD47 Missense_Mutation p.R132C 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AF-06 3 108135721 108135721 C T MYH15 Missense_Mutation p.E1316K 0.41 tolerated(0.24) possibly_damaging(0.856) TCGA-EE-A3AF-06 3 108220605 108220605 G A MYH15 Missense_Mutation p.S118F 0.42 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AF-06 3 108541715 108541715 G A TRAT1 5'UTR 0.35 TCGA-EE-A3AF-06 3 111766811 111766811 A G TMPRSS7 Missense_Mutation p.Y193C 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A3AF-06 3 113285295 113285295 G A SIDT1 Missense_Mutation p.S84N 0.38 tolerated(0.08) possibly_damaging(0.536) TCGA-EE-A3AF-06 3 119099820 119099820 C T ARHGAP31 Missense_Mutation p.P140S 0.41 tolerated(0.16) possibly_damaging(0.693) TCGA-EE-A3AF-06 3 121100199 121100199 G A STXBP5L Missense_Mutation p.D827N 0.43 tolerated(0.33) possibly_damaging(0.561) TCGA-EE-A3AF-06 3 121342087 121342087 G A FBXO40 Missense_Mutation p.R604K 0.36 deleterious(0.01) benign(0.307) TCGA-EE-A3AF-06 3 122680022 122680022 C T SEMA5B Nonsense_Mutation p.W84* 0.36 TCGA-EE-A3AF-06 3 123512533 123512533 G A MYLK Silent p.F52F 0.34 TCGA-EE-A3AF-06 3 124149592 124149592 G A KALRN Silent p.R931R 0.27 TCGA-EE-A3AF-06 3 12458497 12458497 G A PPARG Missense_Mutation p.G372S 0.39 tolerated(0.05) probably_damaging(0.974) TCGA-EE-A3AF-06 3 125876337 125876337 C T ALDH1L1 Missense_Mutation p.G136E 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AF-06 3 127703092 127703092 G A KBTBD12 Missense_Mutation p.D615N 0.42 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-EE-A3AF-06 3 127817732 127817732 T C RUVBL1 Silent p.E270E 0.39 TCGA-EE-A3AF-06 3 127983479 127983479 C T EEFSEC Missense_Mutation p.S214F 0.40 tolerated(0.66) benign(0.002) TCGA-EE-A3AF-06 3 129134234 129134234 G A EFCAB12 Missense_Mutation p.P231L 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 3 130095608 130095608 C T COL6A5 Missense_Mutation p.S199F 0.33 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A3AF-06 3 130311923 130311923 G A COL6A6 Missense_Mutation p.G1464R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 3 133114782 133114782 C T TMEM108 Silent p.F560F 0.33 TCGA-EE-A3AF-06 3 133472515 133472515 C T TF Missense_Mutation p.P98L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 3 133647198 133647198 C T C3orf36 Silent p.L150L 0.34 TCGA-EE-A3AF-06 3 134086550 134086550 G A AMOTL2 Missense_Mutation p.P277L 0.42 tolerated(0.22) benign(0.011) TCGA-EE-A3AF-06 3 135870726 135870726 G A MSL2 Missense_Mutation p.P333S 0.39 tolerated(0.1) probably_damaging(0.964) TCGA-EE-A3AF-06 3 1427326 1427326 C T CNTN6 Missense_Mutation p.S850F 0.34 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A3AF-06 3 142740370 142740370 T G U2SURP Missense_Mutation p.N275K 0.40 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 3 14520675 14520675 C G SLC6A6 Missense_Mutation p.I511M 0.33 deleterious(0.04) possibly_damaging(0.571) TCGA-EE-A3AF-06 3 14725882 14725882 G A C3orf20 Silent p.L206L 0.36 TCGA-EE-A3AF-06 3 149192738 149192738 A G TM4SF4 Missense_Mutation p.N25S 0.26 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AF-06 3 151073808 151073808 T A MED12L Missense_Mutation p.L846Q 0.39 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 3 151545890 151545890 C T AADAC Missense_Mutation p.S377L 0.32 tolerated(0.47) benign(0.02) TCGA-EE-A3AF-06 3 161214749 161214749 C T OTOL1 Missense_Mutation p.P52S 0.36 tolerated(0.63) unknown(0) TCGA-EE-A3AF-06 3 161220831 161220831 G A OTOL1 Missense_Mutation p.G179R 0.38 deleterious(0) unknown(0) TCGA-EE-A3AF-06 3 16302261 16302261 G A DPH3 3'UTR 0.29 TCGA-EE-A3AF-06 3 164906736 164906736 C T SLITRK3 Missense_Mutation p.G628E 0.30 tolerated(0.55) benign(0.086) TCGA-EE-A3AF-06 3 165547927 165547927 C T BCHE Missense_Mutation p.E299K 0.33 tolerated(0.33) benign(0.051) TCGA-EE-A3AF-06 3 16635245 16635245 C T DAZL Missense_Mutation p.E238K 0.41 deleterious(0) possibly_damaging(0.507) TCGA-EE-A3AF-06 3 167184988 167184988 G A SERPINI2 Silent p.L111L 0.39 TCGA-EE-A3AF-06 3 168818731 168818731 G A MECOM Missense_Mutation p.P808S 0.27 tolerated(0.05) probably_damaging(1) TCGA-EE-A3AF-06 3 170198277 170198277 G A SLC7A14 Silent p.I598I 0.42 TCGA-EE-A3AF-06 3 170725020 170725020 C T SLC2A2 Missense_Mutation p.G177S 0.13 tolerated(0.29) possibly_damaging(0.588) TCGA-EE-A3AF-06 3 184008046 184008046 G A ECE2 Missense_Mutation p.E637K 0.46 tolerated(0.24) benign(0.212) TCGA-EE-A3AF-06 3 18419810 18419810 G A SATB1 Missense_Mutation p.T476I 0.40 tolerated(0.27) benign(0.049) TCGA-EE-A3AF-06 3 185190820 185190820 C T MAP3K13 Silent p.S567S 0.34 TCGA-EE-A3AF-06 3 185190821 185190821 C T MAP3K13 Missense_Mutation p.P568S 0.35 tolerated(0.08) probably_damaging(0.976) TCGA-EE-A3AF-06 3 185307940 185307940 C T SENP2 Missense_Mutation p.A47V 0.31 tolerated(0.14) benign(0.026) TCGA-EE-A3AF-06 3 185307941 185307941 C T SENP2 Silent p.A47A 0.33 TCGA-EE-A3AF-06 3 186571030 186571030 C T ADIPOQ Silent p.T61T 0.52 TCGA-EE-A3AF-06 3 186760986 186760986 G A ST6GAL1 Nonsense_Mutation p.W165* 0.28 TCGA-EE-A3AF-06 3 186760987 186760987 G A ST6GAL1 Missense_Mutation p.E166K 0.29 benign(0.008) TCGA-EE-A3AF-06 3 189608669 189608669 G A TP63 Missense_Mutation p.D582N 0.39 deleterious(0) benign(0.423) TCGA-EE-A3AF-06 3 194081252 194081252 C T LRRC15 Missense_Mutation p.G180E 0.32 tolerated(0.53) benign(0.055) TCGA-EE-A3AF-06 3 19575403 19575403 C T KCNH8 Missense_Mutation p.L1046F 0.37 tolerated_low_confidence(0.06) possibly_damaging(0.628) TCGA-EE-A3AF-06 3 20216331 20216331 G A SGOL1 Missense_Mutation p.P231L 0.36 tolerated(0.06) benign(0.08) TCGA-EE-A3AF-06 3 24270443 24270443 G A THRB Missense_Mutation p.P3L 0.32 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A3AF-06 3 30733068 30733068 G A TGFBR2 Missense_Mutation p.G586S 0.32 tolerated_low_confidence(0.66) benign(0.002) TCGA-EE-A3AF-06 3 30733069 30733069 G A TGFBR2 Missense_Mutation p.G586D 0.32 tolerated_low_confidence(0.18) benign(0.004) TCGA-EE-A3AF-06 3 32207311 32207311 C T GPD1L Missense_Mutation p.P322L 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 3 37366816 37366816 C T GOLGA4 Silent p.L1169L 0.37 TCGA-EE-A3AF-06 3 38620983 38620983 C T SCN5A Missense_Mutation p.E1078K 0.39 tolerated(0.45) benign(0.087) TCGA-EE-A3AF-06 3 42906104 42906104 G A ACKR2 Missense_Mutation p.R37K 0.36 tolerated(0.36) benign(0.01) TCGA-EE-A3AF-06 3 42906105 42906105 G C ACKR2 Missense_Mutation p.R37S 0.36 tolerated(0.13) benign(0.017) TCGA-EE-A3AF-06 3 45046817 45046817 G A EXOSC7 Missense_Mutation p.G176R 0.32 deleterious(0) possibly_damaging(0.596) TCGA-EE-A3AF-06 3 45077250 45077250 C T CLEC3B Missense_Mutation p.T148I 0.40 deleterious(0.01) possibly_damaging(0.787) TCGA-EE-A3AF-06 3 46621317 46621317 G A TDGF1 Silent p.R104R 0.37 TCGA-EE-A3AF-06 3 46902187 46902187 G A MYL3 Silent p.L96L 0.25 TCGA-EE-A3AF-06 3 47461108 47461114 CTGTTCC TCT SCAP Frame_Shift_Del p.Q550Afs*65 0.30 TCGA-EE-A3AF-06 3 47777561 47777561 A G SMARCC1 Missense_Mutation p.L180S 0.37 deleterious(0.01) possibly_damaging(0.542) TCGA-EE-A3AF-06 3 48461395 48461395 C T PLXNB1 Missense_Mutation p.G767E 0.43 tolerated(1) benign(0) TCGA-EE-A3AF-06 3 48474207 48474207 C T CCDC51 Missense_Mutation p.G283R 0.41 tolerated(0.11) possibly_damaging(0.473) TCGA-EE-A3AF-06 3 49049835 49049835 C T WDR6 Missense_Mutation p.L320F 0.37 deleterious(0.05) possibly_damaging(0.901) TCGA-EE-A3AF-06 3 49227403 49227403 G A C3orf84 Intron 0.37 TCGA-EE-A3AF-06 3 49680262 49680262 C T BSN Missense_Mutation p.P399S 0.21 unknown(0) TCGA-EE-A3AF-06 3 49680263 49680263 C T BSN Missense_Mutation p.P399L 0.23 unknown(0) TCGA-EE-A3AF-06 3 49756440 49756440 G A AMIGO3 Silent p.F153F 0.42 TCGA-EE-A3AF-06 3 51398000 51398000 G A DOCK3 Missense_Mutation p.G1648E 0.39 tolerated(0.36) benign(0.012) TCGA-EE-A3AF-06 3 53699766 53699766 C T CACNA1D Silent p.I282I 0.37 TCGA-EE-A3AF-06 3 53736796 53736796 C T CACNA1D Missense_Mutation p.P450L 0.36 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AF-06 3 57132039 57132039 G A IL17RD Silent p.F564F 0.40 TCGA-EE-A3AF-06 3 57894811 57894811 G A SLMAP Missense_Mutation p.E511K 0.29 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-EE-A3AF-06 3 62452067 62452067 C T CADPS Missense_Mutation p.D1167N 0.28 tolerated(0.09) possibly_damaging(0.539) TCGA-EE-A3AF-06 3 73111720 73111720 C T EBLN2 Missense_Mutation p.P163L 0.36 tolerated(0.65) possibly_damaging(0.908) TCGA-EE-A3AF-06 3 77638082 77638082 C T ROBO2 Missense_Mutation p.A910V 0.38 deleterious(0) possibly_damaging(0.483) TCGA-EE-A3AF-06 3 9027473 9027473 G A SRGAP3 Silent p.A1010A 0.35 TCGA-EE-A3AF-06 3 99514644 99514644 G A COL8A1 Silent p.V633V 0.34 TCGA-EE-A3AF-06 4 100460485 100460485 C T C4orf17 Missense_Mutation p.S265L 0.28 tolerated(0.19) benign(0.027) TCGA-EE-A3AF-06 4 1018889 1018889 C T FGFRL1 Silent p.A423A 0.27 TCGA-EE-A3AF-06 4 104057328 104057328 C T CENPE Missense_Mutation p.M2164I 0.42 benign(0.03) TCGA-EE-A3AF-06 4 110662030 110662030 G A CFI 3'UTR 0.35 TCGA-EE-A3AF-06 4 119979074 119979074 G A SYNPO2 Nonsense_Mutation p.W1257* 0.42 TCGA-EE-A3AF-06 4 120194808 120194808 C T USP53 Silent p.N732N 0.12 TCGA-EE-A3AF-06 4 120194809 120194809 C T USP53 Silent p.L733L 0.16 TCGA-EE-A3AF-06 4 121774692 121774692 G A PRDM5 Missense_Mutation p.R61C 0.36 deleterious(0.04) benign(0.04) TCGA-EE-A3AF-06 4 1373968 1373970 CGT TG UVSSA Frame_Shift_Del p.R568Wfs*16 0.33 TCGA-EE-A3AF-06 4 141590809 141590809 G A TBC1D9 Silent p.P472P 0.43 TCGA-EE-A3AF-06 4 151753103 151753103 A G LRBA Missense_Mutation p.L1532S 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 4 153690518 153690518 C T TIGD4 3'UTR 0.60 TCGA-EE-A3AF-06 4 153864378 153864378 T G FHDC1 Missense_Mutation p.S57A 0.33 tolerated(1) benign(0.008) TCGA-EE-A3AF-06 4 154517466 154517466 G T KIAA0922 Missense_Mutation p.L684F 0.28 tolerated(0.16) possibly_damaging(0.447) TCGA-EE-A3AF-06 4 155252864 155252864 G A DCHS2 Missense_Mutation p.P746S 0.38 tolerated(0.87) benign(0.001) TCGA-EE-A3AF-06 4 155533572 155533572 C T FGG Missense_Mutation p.D32N 0.33 deleterious(0.01) possibly_damaging(0.788) TCGA-EE-A3AF-06 4 155870 155870 C T ZNF718 RNA 0.32 TCGA-EE-A3AF-06 4 157771485 157771485 G A PDGFC Missense_Mutation p.P68S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 4 15850315 15850315 G A CD38 3'UTR 0.39 TCGA-EE-A3AF-06 4 162307420 162307420 G A FSTL5 Missense_Mutation p.P675S 0.38 tolerated(0.18) probably_damaging(0.986) TCGA-EE-A3AF-06 4 164050071 164050071 G A NAF1 Missense_Mutation p.S488F 0.42 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-EE-A3AF-06 4 169812091 169812091 C T PALLD Silent p.A661A 0.46 TCGA-EE-A3AF-06 4 170663204 170663204 G A C4orf27 Silent p.L184L 0.27 TCGA-EE-A3AF-06 4 174213410 174213410 G A GALNT7 Missense_Mutation p.D247N 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 4 186066010 186066010 C T SLC25A4 Silent p.L68L 0.37 TCGA-EE-A3AF-06 4 20568996 20568996 C T SLIT2 Missense_Mutation p.P946L 0.28 deleterious(0.03) probably_damaging(0.932) TCGA-EE-A3AF-06 4 25669591 25669591 G A SLC34A2 Missense_Mutation p.G205R 0.27 deleterious(0) benign(0.32) TCGA-EE-A3AF-06 4 25669592 25669592 G A SLC34A2 Missense_Mutation p.G205E 0.27 deleterious(0) possibly_damaging(0.595) TCGA-EE-A3AF-06 4 25678050 25678050 G A SLC34A2 Silent p.P584P 0.35 TCGA-EE-A3AF-06 4 38987956 38987956 C T TMEM156 Missense_Mutation p.A275T 0.30 tolerated(0.33) benign(0.288) TCGA-EE-A3AF-06 4 41683002 41683002 C T LIMCH1 Missense_Mutation p.P831S 0.34 tolerated(0.11) benign(0.176) TCGA-EE-A3AF-06 4 435898 435898 A C ZNF721 Missense_Mutation p.C786W 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 4 437664 437664 G A ZNF721 Missense_Mutation p.R198C 0.28 tolerated(1) benign(0) TCGA-EE-A3AF-06 4 54347931 54347931 C G LNX1 Missense_Mutation p.G481R 0.34 tolerated(0.09) benign(0.273) TCGA-EE-A3AF-06 4 55948709 55948709 G A KDR Silent p.I1252I 0.33 TCGA-EE-A3AF-06 4 6698806 6698806 G A S100P 3'UTR 0.35 TCGA-EE-A3AF-06 4 6698807 6698807 G A S100P 3'UTR 0.35 TCGA-EE-A3AF-06 4 68406743 68406743 C A CENPC Missense_Mutation p.G31C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 4 68489893 68489893 G A UBA6 Missense_Mutation p.P931S 0.35 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AF-06 4 68693003 68693003 C T TMPRSS11D Missense_Mutation p.G310R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 4 69332449 69332449 G A TMPRSS11E Missense_Mutation p.M79I 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AF-06 4 73013023 73013023 C T NPFFR2 Missense_Mutation p.H355Y 0.34 tolerated(0.66) benign(0.012) TCGA-EE-A3AF-06 4 73156631 73156631 G A ADAMTS3 Missense_Mutation p.R958C 0.33 deleterious(0) possibly_damaging(0.896) TCGA-EE-A3AF-06 4 75314854 75314854 G A AREG Missense_Mutation p.G134E 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-EE-A3AF-06 4 7666085 7666085 C T SORCS2 Missense_Mutation p.R320W 0.25 tolerated(0.08) benign(0.02) TCGA-EE-A3AF-06 4 8293173 8293173 C T HTRA3 Missense_Mutation p.P262L 0.42 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AF-06 4 8293174 8293174 C T HTRA3 Silent p.P262P 0.43 TCGA-EE-A3AF-06 4 8394159 8394159 G A ACOX3 Missense_Mutation p.H401Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AF-06 4 85658343 85658343 G A WDFY3 Missense_Mutation p.H2251Y 0.36 tolerated(1) benign(0.005) TCGA-EE-A3AF-06 4 88533473 88533473 G A DSPP Splice_Site p.X46_splice 0.35 TCGA-EE-A3AF-06 4 88533474 88533474 G A DSPP Missense_Mutation p.D46N 0.37 possibly_damaging(0.6) TCGA-EE-A3AF-06 4 88732577 88732577 G A IBSP Missense_Mutation p.E157K 0.26 tolerated(0.06) benign(0.084) TCGA-EE-A3AF-06 4 90171259 90171259 C T GPRIN3 Translation_Start_Site p.M1? 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 4 90857303 90857303 T G MMRN1 Nonsense_Mutation p.Y824* 0.38 TCGA-EE-A3AF-06 4 960963 960963 G A DGKQ Silent p.L392L 0.25 TCGA-EE-A3AF-06 4 9783859 9783859 G A DRD5 Missense_Mutation p.R69H 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A3AF-06 4 9784432 9784432 C T DRD5 Missense_Mutation p.S260F 0.35 deleterious(0) probably_damaging(0.961) TCGA-EE-A3AF-06 5 115249063 115249063 G A AP3S1 Missense_Mutation p.G153D 0.26 deleterious(0.02) possibly_damaging(0.467) TCGA-EE-A3AF-06 5 115782538 115782538 C T SEMA6A Missense_Mutation p.R955K 0.45 deleterious(0.05) benign(0.02) TCGA-EE-A3AF-06 5 118970779 118970779 G A FAM170A Intron 0.27 TCGA-EE-A3AF-06 5 126993510 126993510 G A CTXN3 3'UTR 0.43 TCGA-EE-A3AF-06 5 128448568 128448568 C T ISOC1 Silent p.I257I 0.31 TCGA-EE-A3AF-06 5 128990004 128990004 C T ADAMTS19 Missense_Mutation p.P722S 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AF-06 5 129037189 129037189 C T ADAMTS19 Silent p.A1015A 0.27 TCGA-EE-A3AF-06 5 129037190 129037190 C T ADAMTS19 Nonsense_Mutation p.R1016* 0.30 TCGA-EE-A3AF-06 5 131543476 131543476 G A P4HA2 Silent p.S335S 0.29 TCGA-EE-A3AF-06 5 137223044 137223044 A G MYOT Silent p.Q489Q 0.47 TCGA-EE-A3AF-06 5 137475806 137475806 C T BRD8 Missense_Mutation p.G1222E 0.29 deleterious_low_confidence(0.03) benign(0) TCGA-EE-A3AF-06 5 137475807 137475807 C T BRD8 Missense_Mutation p.G1222R 0.29 deleterious_low_confidence(0.01) benign(0.01) TCGA-EE-A3AF-06 5 137497483 137497483 A C BRD8 Splice_Site p.X750_splice 0.31 TCGA-EE-A3AF-06 5 137600188 137600188 G A GFRA3 Silent p.A47A 0.39 TCGA-EE-A3AF-06 5 13771003 13771003 C T DNAH5 Missense_Mutation p.D3154N 0.26 possibly_damaging(0.822) TCGA-EE-A3AF-06 5 13839514 13839514 C T DNAH5 Missense_Mutation p.E1945K 0.35 possibly_damaging(0.621) TCGA-EE-A3AF-06 5 13901505 13901505 C T DNAH5 Silent p.R636R 0.43 TCGA-EE-A3AF-06 5 139061000 139061000 G A CXXC5 Missense_Mutation p.E298K 0.37 tolerated(0.09) probably_damaging(0.985) TCGA-EE-A3AF-06 5 139747451 139747451 C T SLC4A9 Silent p.A798A 0.37 TCGA-EE-A3AF-06 5 139908476 139908476 C T ANKHD1 Missense_Mutation p.T1982I 0.38 possibly_damaging(0.806) TCGA-EE-A3AF-06 5 139946858 139946858 C T SLC35A4 Missense_Mutation p.P35L 0.28 tolerated(0.36) probably_damaging(0.996) TCGA-EE-A3AF-06 5 140229401 140229401 G A PCDHA9 Missense_Mutation p.V441M 0.35 tolerated_low_confidence(0.09) possibly_damaging(0.588) TCGA-EE-A3AF-06 5 140262387 140262387 C T PCDHA13 Silent p.F178F 0.27 TCGA-EE-A3AF-06 5 140389607 140389607 C T PCDHAC1 3'UTR 0.39 TCGA-EE-A3AF-06 5 140480211 140480211 G A PCDHB3 5'Flank 0.21 TCGA-EE-A3AF-06 5 140482693 140482693 C T PCDHB3 3'UTR 0.44 TCGA-EE-A3AF-06 5 140530763 140530763 G A PCDHB6 Missense_Mutation p.E309K 0.34 tolerated(0.71) benign(0.003) TCGA-EE-A3AF-06 5 140537819 140537819 C T PCDHB17 3'UTR 0.34 TCGA-EE-A3AF-06 5 140553530 140553530 G A PCDHB7 Missense_Mutation p.D372N 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AF-06 5 140558522 140558522 C T PCDHB8 Nonsense_Mutation p.R303* 0.19 TCGA-EE-A3AF-06 5 140573022 140573022 G A PCDHB10 Silent p.G299G 0.34 TCGA-EE-A3AF-06 5 140710787 140710787 C T PCDHGA1 Missense_Mutation p.S179F 0.41 deleterious_low_confidence(0.03) benign(0.35) TCGA-EE-A3AF-06 5 140711777 140711777 C T PCDHGA1 Missense_Mutation p.S509F 0.37 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EE-A3AF-06 5 140711993 140711993 C T PCDHGA1 Missense_Mutation p.S581F 0.39 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-EE-A3AF-06 5 140711994 140711994 C T PCDHGA1 Silent p.S581S 0.39 TCGA-EE-A3AF-06 5 140718911 140718911 G A PCDHGA2 Missense_Mutation p.D125N 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AF-06 5 140750016 140750016 C T PCDHGB3 Missense_Mutation p.L19F 0.27 tolerated(0.7) benign(0.051) TCGA-EE-A3AF-06 5 140774692 140774692 C T PCDHGA8 Missense_Mutation p.P771L 0.32 deleterious_low_confidence(0) benign(0.3) TCGA-EE-A3AF-06 5 141016366 141016383 CGGGAGCAGGCCCCGCAC - HDAC3 5'UTR 0.30 TCGA-EE-A3AF-06 5 141023974 141023974 G A FCHSD1 Silent p.T558T 0.30 TCGA-EE-A3AF-06 5 145379676 145379676 G A SH3RF2 Missense_Mutation p.R145K 0.29 tolerated(0.66) benign(0.047) TCGA-EE-A3AF-06 5 147928256 147928256 G A HTR4 Missense_Mutation p.H110Y 0.52 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 5 148679167 148679167 G A AFAP1L1 Missense_Mutation p.A38T 0.31 tolerated(0.82) benign(0.184) TCGA-EE-A3AF-06 5 148695858 148695858 C T AFAP1L1 Missense_Mutation p.P420L 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AF-06 5 149212615 149212615 C T PPARGC1B Missense_Mutation p.P327S 0.25 tolerated(0.09) benign(0.007) TCGA-EE-A3AF-06 5 149578887 149578887 C T SLC6A7 Silent p.I227I 0.33 TCGA-EE-A3AF-06 5 149585174 149585174 C T SLC6A7 Silent p.G563G 0.38 TCGA-EE-A3AF-06 5 151043046 151043046 A C SPARC 3'UTR 0.43 TCGA-EE-A3AF-06 5 151208544 151208544 T C GLRA1 Missense_Mutation p.N333D 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A3AF-06 5 156786096 156786096 C T CYFIP2 Silent p.L893L 0.35 TCGA-EE-A3AF-06 5 160025810 160025810 C G ATP10B Missense_Mutation p.L1177F 0.35 deleterious(0.04) benign(0.078) TCGA-EE-A3AF-06 5 163455 163455 C T PLEKHG4B Nonsense_Mutation p.Q734* 0.35 TCGA-EE-A3AF-06 5 170159873 170159873 G A KCNIP1 Missense_Mutation p.D180N 0.28 tolerated(0.18) possibly_damaging(0.882) TCGA-EE-A3AF-06 5 170814859 170814859 C T NPM1 5'UTR 0.25 TCGA-EE-A3AF-06 5 176011254 176011254 G A CDHR2 Missense_Mutation p.D708N 0.28 tolerated(0.17) benign(0.395) TCGA-EE-A3AF-06 5 179757801 179757801 C T GFPT2 Missense_Mutation p.D145N 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 5 179992836 179992836 G T CNOT6 Missense_Mutation p.M192I 0.35 deleterious(0.01) benign(0.348) TCGA-EE-A3AF-06 5 19520879 19520879 C G CDH18 Missense_Mutation p.D467H 0.34 tolerated(0.26) benign(0.237) TCGA-EE-A3AF-06 5 19838942 19838942 T C CDH18 Missense_Mutation p.K52E 0.30 deleterious(0.02) probably_damaging(0.956) TCGA-EE-A3AF-06 5 22142546 22142546 T G CDH12 Intron 0.39 TCGA-EE-A3AF-06 5 33588887 33588887 G A ADAMTS12 Silent p.C894C 0.39 TCGA-EE-A3AF-06 5 35779286 35779286 T A SPEF2 Missense_Mutation p.Y1429N 0.27 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A3AF-06 5 38406258 38406258 G A EGFLAM Missense_Mutation p.G248E 0.39 deleterious_low_confidence(0.03) benign(0.216) TCGA-EE-A3AF-06 5 38438452 38438452 C T EGFLAM Missense_Mutation p.P787S 0.37 deleterious(0.03) probably_damaging(0.94) TCGA-EE-A3AF-06 5 38438453 38438453 C T EGFLAM Missense_Mutation p.P787L 0.36 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AF-06 5 38451522 38451522 C T EGFLAM Silent p.F891F 0.42 TCGA-EE-A3AF-06 5 39382768 39382768 G A DAB2 Silent p.I431I 0.34 TCGA-EE-A3AF-06 5 39382834 39382834 C T DAB2 Silent p.Q409Q 0.43 TCGA-EE-A3AF-06 5 40854198 40854198 G A CARD6 Missense_Mutation p.G922S 0.36 tolerated(0.41) benign(0.004) TCGA-EE-A3AF-06 5 40955635 40955635 C T C7 Missense_Mutation p.P414S 0.26 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AF-06 5 41149459 41149459 G A C6 Missense_Mutation p.S836F 0.42 deleterious(0) probably_damaging(0.933) TCGA-EE-A3AF-06 5 41159225 41159225 C T C6 Silent p.K605K 0.34 TCGA-EE-A3AF-06 5 42718182 42718182 C T GHR Missense_Mutation p.P302S 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 5 42801054 42801054 C T SEPP1 Missense_Mutation p.R305Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-EE-A3AF-06 5 43280276 43280276 G A NIM1K Silent p.V252V 0.33 TCGA-EE-A3AF-06 5 49699070 49699070 A T EMB Silent p.L273L 0.27 TCGA-EE-A3AF-06 5 5239924 5239924 G A ADAMTS16 Silent p.V803V 0.33 TCGA-EE-A3AF-06 5 75886394 75886394 G A IQGAP2 Missense_Mutation p.E268K 0.28 tolerated(0.2) benign(0.028) TCGA-EE-A3AF-06 5 75954283 75954283 G A IQGAP2 Splice_Site p.X774_splice 0.39 TCGA-EE-A3AF-06 5 78384391 78384391 C T BHMT2 Silent p.D362D 0.30 TCGA-EE-A3AF-06 5 79028080 79028080 C T CMYA5 Silent p.T1164T 0.35 TCGA-EE-A3AF-06 5 80550306 80550306 C T CKMT2 Missense_Mutation p.S148L 0.33 deleterious(0.01) benign(0.2) TCGA-EE-A3AF-06 5 83239200 83239200 G A EDIL3 3'UTR 0.33 TCGA-EE-A3AF-06 5 89953946 89953946 G A GPR98 Missense_Mutation p.E1535K 0.37 possibly_damaging(0.905) TCGA-EE-A3AF-06 5 89979591 89979591 C T GPR98 Silent p.V1951V 0.49 TCGA-EE-A3AF-06 5 94230396 94230396 G A MCTP1 Silent p.S599S 0.29 TCGA-EE-A3AF-06 5 96073640 96073640 C T CAST Missense_Mutation p.P222S 0.40 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AF-06 6 112386017 112386017 C T WISP3 Nonsense_Mutation p.Q154* 0.61 TCGA-EE-A3AF-06 6 13053619 13053619 G A PHACTR1 Silent p.A91A 0.45 TCGA-EE-A3AF-06 6 13053620 13053620 G A PHACTR1 Missense_Mutation p.A92T 0.45 deleterious(0.01) possibly_damaging(0.682) TCGA-EE-A3AF-06 6 136596682 136596682 G A BCLAF1 Missense_Mutation p.H614Y 0.11 deleterious(0) benign(0.291) TCGA-EE-A3AF-06 6 136597029 136597029 G A BCLAF1 Missense_Mutation p.P545L 0.18 deleterious(0) possibly_damaging(0.851) TCGA-EE-A3AF-06 6 152529294 152529294 C T SYNE1 Missense_Mutation p.G7546E 0.48 probably_damaging(0.989) TCGA-EE-A3AF-06 6 152792854 152792854 C T SYNE1 Missense_Mutation p.E504K 0.53 benign(0.444) TCGA-EE-A3AF-06 6 154412374 154412374 C T OPRM1 Missense_Mutation p.P404S 0.58 tolerated(0.14) benign(0.155) TCGA-EE-A3AF-06 6 155451257 155451257 G A TIAM2 Silent p.R300R 0.71 TCGA-EE-A3AF-06 6 155451258 155451258 G A TIAM2 Missense_Mutation p.E301K 0.71 deleterious(0.01) benign(0.097) TCGA-EE-A3AF-06 6 157469767 157469767 C T ARID1B Missense_Mutation p.S854F 0.53 probably_damaging(0.999) TCGA-EE-A3AF-06 6 166883354 166883354 G A RPS6KA2 Missense_Mutation p.P324L 0.58 tolerated(0.19) benign(0.006) TCGA-EE-A3AF-06 6 167595307 167595307 C T TCP10L2 Missense_Mutation p.P322L 0.50 deleterious(0) possibly_damaging(0.685) TCGA-EE-A3AF-06 6 167786754 167786754 G A TCP10 Missense_Mutation p.P295L 0.17 deleterious(0) possibly_damaging(0.827) TCGA-EE-A3AF-06 6 26156687 26156687 G - HIST1H1E Frame_Shift_Del p.A24Pfs*65 0.23 TCGA-EE-A3AF-06 6 26247052 26247052 A G HIST1H4G Missense_Mutation p.Y52H 0.52 deleterious(0.02) possibly_damaging(0.798) TCGA-EE-A3AF-06 6 29012249 29012249 C T OR2W1 Missense_Mutation p.R235Q 0.58 tolerated(0.34) benign(0.011) TCGA-EE-A3AF-06 6 29142225 29142225 G A OR2J2 Silent p.Q271Q 0.58 TCGA-EE-A3AF-06 6 29574771 29574771 G A GABBR1 Missense_Mutation p.P707L 0.31 deleterious(0.04) possibly_damaging(0.688) TCGA-EE-A3AF-06 6 30610592 30610592 C T ATAT1 Missense_Mutation p.R246C 0.49 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A3AF-06 6 30862330 30862330 C T DDR1 Silent p.V465V 0.63 TCGA-EE-A3AF-06 6 30862331 30862331 C T DDR1 Missense_Mutation p.P466S 0.63 tolerated(0.24) benign(0.321) TCGA-EE-A3AF-06 6 30919831 30919831 C T DPCR1 Missense_Mutation p.T1197I 0.51 deleterious(0.02) benign(0.268) TCGA-EE-A3AF-06 6 30919832 30919832 C T DPCR1 Silent p.T1197T 0.52 TCGA-EE-A3AF-06 6 31599457 31599457 C T PRRC2A Missense_Mutation p.L1003F 0.34 unknown(0) TCGA-EE-A3AF-06 6 31607321 31607321 G A BAG6 Missense_Mutation p.R1087W 0.58 deleterious(0.02) benign(0.061) TCGA-EE-A3AF-06 6 31607322 31607322 G A BAG6 Silent p.S1086S 0.58 TCGA-EE-A3AF-06 6 31660753 31660753 C T ABHD16A Intron 0.32 TCGA-EE-A3AF-06 6 32023718 32023718 C T TNXB Missense_Mutation p.G2793S 0.47 benign(0.41) TCGA-EE-A3AF-06 6 32037435 32037435 C T TNXB Missense_Mutation p.E1828K 0.31 probably_damaging(0.986) TCGA-EE-A3AF-06 6 32062967 32062967 C T TNXB Silent p.E748E 0.27 TCGA-EE-A3AF-06 6 32083520 32083520 G A ATF6B Missense_Mutation p.P703L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3AF-06 6 33052830 33052830 C T HLA-DPB1 Silent p.V156V 0.52 TCGA-EE-A3AF-06 6 33386002 33386002 G A CUTA 5'UTR 0.50 TCGA-EE-A3AF-06 6 34024435 34024435 T A GRM4 Missense_Mutation p.T352S 0.24 tolerated(0.46) benign(0.334) TCGA-EE-A3AF-06 6 36929703 36929703 C T PI16 Missense_Mutation p.P182L 0.22 deleterious(0) probably_damaging(0.943) TCGA-EE-A3AF-06 6 36976693 36976693 C T FGD2 Missense_Mutation p.P51L 0.56 deleterious(0.04) benign(0.016) TCGA-EE-A3AF-06 6 38891859 38891859 G A DNAH8 Nonsense_Mutation p.W3411* 0.19 TCGA-EE-A3AF-06 6 4087739 4087739 T C C6orf201 5'UTR 0.28 TCGA-EE-A3AF-06 6 44217832 44217832 C T HSP90AB1 Missense_Mutation p.R197W 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AF-06 6 44253959 44253959 G A TCTE1 Silent p.F196F 0.25 TCGA-EE-A3AF-06 6 46656539 46656539 C T TDRD6 Missense_Mutation p.P225L 0.58 deleterious(0.02) benign(0.017) TCGA-EE-A3AF-06 6 46991839 46991839 G A GPR110 Missense_Mutation p.P131L 0.53 tolerated(0.06) benign(0.073) TCGA-EE-A3AF-06 6 46991840 46991840 G A GPR110 Missense_Mutation p.P131S 0.53 tolerated(0.13) benign(0.011) TCGA-EE-A3AF-06 6 47650308 47650308 C T GPR111 Silent p.I671I 0.25 TCGA-EE-A3AF-06 6 49668428 49668428 C T CRISP2 Missense_Mutation p.E46K 0.62 tolerated(0.23) possibly_damaging(0.612) TCGA-EE-A3AF-06 6 49696553 49696553 C T CRISP3 Missense_Mutation p.E233K 0.54 tolerated(0.14) benign(0.087) TCGA-EE-A3AF-06 6 53519241 53519241 C T KLHL31 Missense_Mutation p.R277K 0.55 tolerated(0.37) possibly_damaging(0.783) TCGA-EE-A3AF-06 6 70071218 70071218 G T BAI3 Missense_Mutation p.M1351I 0.47 tolerated(0.48) benign(0) TCGA-EE-A3AF-06 6 70916922 70916922 C T COL19A1 Missense_Mutation p.P1125S 0.59 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AF-06 6 7565653 7565653 C T DSP Missense_Mutation p.S280F 0.27 benign(0.157) TCGA-EE-A3AF-06 6 7565654 7565654 C T DSP Silent p.S280S 0.27 TCGA-EE-A3AF-06 6 7569544 7569544 G A DSP Silent p.P515P 0.52 TCGA-EE-A3AF-06 6 7580541 7580541 C A DSP Missense_Mutation p.T1373N 0.27 benign(0.147) TCGA-EE-A3AF-06 6 7583978 7583978 C T DSP Silent p.S2161S 0.23 TCGA-EE-A3AF-06 6 7584254 7584254 C T DSP Silent p.F2253F 0.57 TCGA-EE-A3AF-06 6 79671440 79671440 G A PHIP Missense_Mutation p.T1208I 0.46 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AF-06 6 90660443 90660443 G A BACH2 Missense_Mutation p.P461L 0.63 tolerated(0.24) benign(0.036) TCGA-EE-A3AF-06 6 90660444 90660444 G A BACH2 Missense_Mutation p.P461S 0.63 tolerated(0.25) benign(0.002) TCGA-EE-A3AF-06 7 100086303 100086303 C T NYAP1 Missense_Mutation p.P320L 0.30 tolerated(0.98) benign(0.2) TCGA-EE-A3AF-06 7 100091298 100091298 C T NYAP1 Silent p.P766P 0.81 TCGA-EE-A3AF-06 7 100466486 100466486 C T TRIP6 Nonsense_Mutation p.Q245* 0.14 TCGA-EE-A3AF-06 7 100681427 100681427 C T MUC17 Missense_Mutation p.P2244S 0.50 unknown(0) TCGA-EE-A3AF-06 7 100687065 100687065 C T MUC17 Missense_Mutation p.P4123L 0.41 unknown(0) TCGA-EE-A3AF-06 7 102895234 102895234 G A DPY19L2P2 RNA 0.10 TCGA-EE-A3AF-06 7 117025764 117025764 C T ASZ1 Silent p.E180E 0.25 TCGA-EE-A3AF-06 7 119915728 119915728 G A KCND2 Missense_Mutation p.G348R 0.28 deleterious(0.02) possibly_damaging(0.898) TCGA-EE-A3AF-06 7 120590873 120590873 G A ING3 5'UTR 0.61 TCGA-EE-A3AF-06 7 120911433 120911433 G A CPED1 Missense_Mutation p.M939I 0.21 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AF-06 7 120911434 120911434 G A CPED1 Missense_Mutation p.G940R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 7 123508985 123508985 T A HYAL4 Missense_Mutation p.Y220N 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 7 128497214 128497214 C T FLNC Missense_Mutation p.S2535L 0.23 deleterious(0.03) benign(0.327) TCGA-EE-A3AF-06 7 130135275 130135275 C T MEST Silent p.I31I 0.53 TCGA-EE-A3AF-06 7 132192469 132192469 G A PLXNA4 Silent p.V328V 0.61 TCGA-EE-A3AF-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.52 TCGA-EE-A3AF-06 7 137798460 137798460 G T AKR1D1 Nonsense_Mutation p.E294* 0.44 TCGA-EE-A3AF-06 7 138255744 138255744 C T TRIM24 Missense_Mutation p.P625L 0.51 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A3AF-06 7 138845804 138845804 C T TTC26 Intron 0.29 TCGA-EE-A3AF-06 7 138845805 138845805 C T TTC26 Intron 0.29 TCGA-EE-A3AF-06 7 140301368 140301368 C T DENND2A Missense_Mutation p.G277E 0.25 tolerated(0.13) benign(0.077) TCGA-EE-A3AF-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AF-06 7 141408767 141408767 C T WEE2 Missense_Mutation p.S70L 0.46 tolerated(0.16) benign(0) TCGA-EE-A3AF-06 7 141414204 141414204 C T WEE2 Missense_Mutation p.L180F 0.36 tolerated(0.72) benign(0.021) TCGA-EE-A3AF-06 7 141537845 141537845 G A PRSS37 Missense_Mutation p.P82L 0.44 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A3AF-06 7 141731489 141731489 G A MGAM Missense_Mutation p.G494R 0.26 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AF-06 7 141731490 141731490 G A MGAM Missense_Mutation p.G494E 0.27 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AF-06 7 14188781 14188781 C T DGKB Missense_Mutation p.R797K 0.48 tolerated(0.69) benign(0.001) TCGA-EE-A3AF-06 7 142569731 142569731 C T TRPV6 Missense_Mutation p.R636K 0.23 tolerated(0.14) benign(0.005) TCGA-EE-A3AF-06 7 142636823 142636823 G A C7orf34 Silent p.G60G 0.23 TCGA-EE-A3AF-06 7 142658060 142658060 G A KEL Nonsense_Mutation p.Q119* 0.51 TCGA-EE-A3AF-06 7 143048851 143048851 G A CLCN1 Silent p.G920G 0.48 TCGA-EE-A3AF-06 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.54 tolerated(0.68) benign(0.058) TCGA-EE-A3AF-06 7 148508728 148508728 A T EZH2 Missense_Mutation p.Y646N 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A3AF-06 7 149171825 149171825 G A ZNF746 Missense_Mutation p.R530C 0.58 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AF-06 7 149479935 149479935 G A SSPO Intron 0.33 TCGA-EE-A3AF-06 7 150417378 150417378 C T GIMAP1 Missense_Mutation p.P96S 0.15 tolerated(0.22) benign(0.063) TCGA-EE-A3AF-06 7 150748929 150748931 AGG GA ASIC3 Frame_Shift_Del p.E416Gfs*42 0.20 TCGA-EE-A3AF-06 7 150873316 150873316 G A ASB10 Silent p.S429S 0.25 TCGA-EE-A3AF-06 7 15427080 15427080 C T AGMO Missense_Mutation p.G303E 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 7 154684056 154684056 G A DPP6 Missense_Mutation p.E822K 0.49 deleterious(0) benign(0.446) TCGA-EE-A3AF-06 7 156480835 156480835 C T LMBR1 Missense_Mutation p.G426R 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 7 17836403 17836403 G A SNX13 Intron 0.59 TCGA-EE-A3AF-06 7 21583153 21583153 C T DNAH11 Missense_Mutation p.T97I 0.33 benign(0.002) TCGA-EE-A3AF-06 7 21789969 21789969 G A DNAH11 Missense_Mutation p.R2983Q 0.54 benign(0.045) TCGA-EE-A3AF-06 7 24902874 24902874 G A OSBPL3 Missense_Mutation p.S272L 0.30 tolerated(0.82) benign(0.001) TCGA-EE-A3AF-06 7 31013753 31013753 G A GHRHR Missense_Mutation p.G251R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 7 36910028 36910028 C T ELMO1 Missense_Mutation p.M625I 0.27 tolerated(0.09) benign(0) TCGA-EE-A3AF-06 7 37890311 37890311 G A NME8 Missense_Mutation p.E58K 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 7 4185359 4185359 C T SDK1 Nonsense_Mutation p.Q1412* 0.19 TCGA-EE-A3AF-06 7 44572994 44572994 G A NPC1L1 Intron 0.30 TCGA-EE-A3AF-06 7 4855859 4855859 C T RADIL Missense_Mutation p.G656S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 7 4899683 4899683 C T PAPOLB Missense_Mutation p.G586R 0.24 tolerated(0.06) probably_damaging(0.963) TCGA-EE-A3AF-06 7 50450404 50450404 C T IKZF1 Silent p.S196S 0.25 TCGA-EE-A3AF-06 7 54826944 54826944 G A SEC61G 5'UTR 0.45 TCGA-EE-A3AF-06 7 5521309 5521309 G A FBXL18 3'UTR 0.54 TCGA-EE-A3AF-06 7 56140715 56140715 C T SUMF2 Missense_Mutation p.R103W 0.21 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-EE-A3AF-06 7 6465718 6465718 G A DAGLB Silent p.D319D 0.28 TCGA-EE-A3AF-06 7 65441055 65441055 G A GUSB Missense_Mutation p.L287F 0.49 tolerated(0.1) probably_damaging(0.944) TCGA-EE-A3AF-06 7 6730593 6730593 G A ZNF12 Silent p.P660P 0.25 TCGA-EE-A3AF-06 7 72657239 72657239 C T GTF2IRD2P1 RNA 0.38 TCGA-EE-A3AF-06 7 72718303 72718303 G A NSUN5 Silent p.F286F 0.20 TCGA-EE-A3AF-06 7 73014012 73014012 G A MLXIPL Silent p.N305N 0.48 TCGA-EE-A3AF-06 7 73279510 73279510 C T WBSCR28 Missense_Mutation p.P87L 0.55 tolerated(0.11) probably_damaging(0.958) TCGA-EE-A3AF-06 7 73474218 73474218 T C ELN Silent p.L473L 0.24 TCGA-EE-A3AF-06 7 73944161 73944161 C T GTF2IRD1 Silent p.I428I 0.50 TCGA-EE-A3AF-06 7 76144563 76144563 G A UPK3B Missense_Mutation p.E320K 0.31 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EE-A3AF-06 7 76891536 76891536 G A CCDC146 Missense_Mutation p.R362Q 0.23 deleterious(0) possibly_damaging(0.742) TCGA-EE-A3AF-06 7 8258122 8258122 C T ICA1 Missense_Mutation p.R131Q 0.54 tolerated(0.38) possibly_damaging(0.894) TCGA-EE-A3AF-06 7 8268266 8268266 G A ICA1 Missense_Mutation p.S74L 0.25 tolerated(1) benign(0.002) TCGA-EE-A3AF-06 7 82784258 82784258 G A PCLO Silent p.L567L 0.53 TCGA-EE-A3AF-06 7 86416311 86416311 C T GRM3 Silent p.A401A 0.51 TCGA-EE-A3AF-06 7 88965962 88965962 C T ZNF804B Silent p.S1222S 0.21 TCGA-EE-A3AF-06 7 88965963 88965963 T A ZNF804B Missense_Mutation p.L1223I 0.21 tolerated(0.84) benign(0.004) TCGA-EE-A3AF-06 7 89793801 89793801 G A STEAP1 Missense_Mutation p.G258E 0.57 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AF-06 7 92761935 92761935 G A SAMD9L Missense_Mutation p.S1117F 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 7 92848846 92848846 C T HEPACAM2 Intron 0.61 TCGA-EE-A3AF-06 7 94040251 94040251 C T COL1A2 Silent p.V416V 0.42 TCGA-EE-A3AF-06 7 98507808 98507808 C T TRRAP Missense_Mutation p.P494S 0.51 possibly_damaging(0.641) TCGA-EE-A3AF-06 7 99227005 99227005 C T ZSCAN25 Missense_Mutation p.P333S 0.31 tolerated(0.47) benign(0.091) TCGA-EE-A3AF-06 8 101153311 101153311 T A FBXO43 Missense_Mutation p.S391C 0.45 deleterious(0) benign(0.438) TCGA-EE-A3AF-06 8 101153313 101153313 T A FBXO43 Missense_Mutation p.Q390L 0.43 deleterious(0.05) benign(0.086) TCGA-EE-A3AF-06 8 104388199 104388199 T A CTHRC1 Intron 0.38 TCGA-EE-A3AF-06 8 104987645 104987645 A G RIMS2 Silent p.S946S 0.29 TCGA-EE-A3AF-06 8 105440329 105440329 C T DPYS Missense_Mutation p.G324E 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AF-06 8 109488126 109488126 C T EMC2 Silent p.A175A 0.26 TCGA-EE-A3AF-06 8 110520387 110520387 G A PKHD1L1 Silent p.G3763G 0.34 TCGA-EE-A3AF-06 8 117657180 117657180 C T EIF3H 3'UTR 0.33 TCGA-EE-A3AF-06 8 125463585 125463585 T A TRMT12 Missense_Mutation p.N139K 0.33 deleterious(0) benign(0.155) TCGA-EE-A3AF-06 8 125568001 125568001 C T MTSS1 Missense_Mutation p.D517N 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 8 125568002 125568002 C T MTSS1 Silent p.E516E 0.28 TCGA-EE-A3AF-06 8 131848648 131848648 G A ADCY8 Silent p.F850F 0.31 TCGA-EE-A3AF-06 8 139323150 139323150 G A FAM135B Nonsense_Mutation p.R31* 0.30 TCGA-EE-A3AF-06 8 14095106 14095106 G A SGCZ Missense_Mutation p.T140I 0.40 tolerated(0.23) possibly_damaging(0.522) TCGA-EE-A3AF-06 8 143961147 143961147 G A CYP11B1 Missense_Mutation p.A28V 0.44 tolerated(0.05) benign(0.323) TCGA-EE-A3AF-06 8 144942030 144942030 C T EPPK1 Missense_Mutation p.D1798N 0.30 possibly_damaging(0.617) TCGA-EE-A3AF-06 8 144942031 144942031 C T EPPK1 Nonsense_Mutation p.W1797* 0.30 TCGA-EE-A3AF-06 8 145008899 145008899 C T PLEC Splice_Site p.X453_splice 0.36 TCGA-EE-A3AF-06 8 23540212 23540212 C T NKX3-1 Missense_Mutation p.G64E 0.46 tolerated(0.37) benign(0.005) TCGA-EE-A3AF-06 8 25261071 25261071 C T DOCK5 Intron 0.35 TCGA-EE-A3AF-06 8 25323824 25323824 C T CDCA2 Missense_Mutation p.S174F 0.37 tolerated(0.8) benign(0.001) TCGA-EE-A3AF-06 8 25323825 25323825 C T CDCA2 Silent p.S174S 0.36 TCGA-EE-A3AF-06 8 27308398 27308398 G A PTK2B Missense_Mutation p.E825K 0.35 deleterious(0.03) probably_damaging(0.945) TCGA-EE-A3AF-06 8 2886915 2886915 A T CSMD1 Nonsense_Mutation p.L2594* 0.38 TCGA-EE-A3AF-06 8 30703552 30703552 G A TEX15 Silent p.S994S 0.43 TCGA-EE-A3AF-06 8 36642033 36642033 C T KCNU1 Silent p.F35F 0.40 TCGA-EE-A3AF-06 8 53076592 53076592 G A ST18 Nonsense_Mutation p.Q452* 0.37 TCGA-EE-A3AF-06 8 55541537 55541537 G A RP1 Missense_Mutation p.E1699K 0.32 tolerated(0.05) benign(0.107) TCGA-EE-A3AF-06 8 69434061 69434061 C T C8orf34 Silent p.L265L 0.43 TCGA-EE-A3AF-06 8 7340141 7340141 C T DEFB106B Silent p.G61G 0.20 TCGA-EE-A3AF-06 8 73849566 73849566 G A KCNB2 Missense_Mutation p.G659E 0.30 tolerated_low_confidence(0.52) benign(0.061) TCGA-EE-A3AF-06 8 77617404 77617404 C T ZFHX4 Missense_Mutation p.R361C 0.41 possibly_damaging(0.835) TCGA-EE-A3AF-06 8 77764725 77764725 G A ZFHX4 Silent p.K1856K 0.55 TCGA-EE-A3AF-06 8 8185691 8185691 C T SGK223 Silent p.G867G 0.27 TCGA-EE-A3AF-06 8 8185692 8185692 C T SGK223 Missense_Mutation p.G867E 0.27 possibly_damaging(0.722) TCGA-EE-A3AF-06 8 86126921 86126921 A T C8orf59 Intron 0.38 TCGA-EE-A3AF-06 8 92982904 92982904 C T RUNX1T1 Silent p.Q518Q 0.37 TCGA-EE-A3AF-06 9 104238339 104238339 G A TMEM246 Missense_Mutation p.R346W 0.64 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 9 107331456 107331456 G A OR13C8 Missense_Mutation p.R3K 0.67 tolerated(1) benign(0.001) TCGA-EE-A3AF-06 9 119460989 119460989 G C TRIM32 Missense_Mutation p.R323T 0.67 tolerated(0.16) benign(0.343) TCGA-EE-A3AF-06 9 125330182 125330182 G A OR1L8 Missense_Mutation p.S192F 0.66 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AF-06 9 13125266 13125266 G A MPDZ Nonsense_Mutation p.Q1586* 0.41 TCGA-EE-A3AF-06 9 131742985 131742985 G A NUP188 Missense_Mutation p.G457E 0.62 tolerated(0.42) benign(0.174) TCGA-EE-A3AF-06 9 131742986 131742986 G A NUP188 Silent p.G457G 0.62 TCGA-EE-A3AF-06 9 13176228 13176228 A C MPDZ Missense_Mutation p.C946W 0.38 deleterious(0.05) possibly_damaging(0.556) TCGA-EE-A3AF-06 9 132641904 132641904 C T USP20 Silent p.G855G 0.55 TCGA-EE-A3AF-06 9 132641905 132641905 C T USP20 Missense_Mutation p.H856Y 0.56 tolerated(0.15) benign(0.031) TCGA-EE-A3AF-06 9 137726842 137726842 A G COL5A1 Missense_Mutation p.N1721S 0.73 unknown(0) TCGA-EE-A3AF-06 9 138415115 138415115 G A LCN1 Missense_Mutation p.E87K 0.47 tolerated(0.13) possibly_damaging(0.696) TCGA-EE-A3AF-06 9 139878151 139878151 G A LCNL1 Missense_Mutation p.G38E 0.62 tolerated(0.28) probably_damaging(0.993) TCGA-EE-A3AF-06 9 16436277 16436277 G A BNC2 Missense_Mutation p.P639S 0.55 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 9 19550251 19550251 C T SLC24A2 Missense_Mutation p.E455K 0.51 deleterious(0.05) benign(0.005) TCGA-EE-A3AF-06 9 35801659 35801659 G A NPR2 Missense_Mutation p.E486K 0.53 deleterious(0) possibly_damaging(0.573) TCGA-EE-A3AF-06 9 72064563 72064563 G A APBA1 Silent p.I706I 0.53 TCGA-EE-A3AF-06 X 100333900 100333900 C T TMEM35 5'UTR 0.28 TCGA-EE-A3AF-06 X 100503576 100503576 G A DRP2 Missense_Mutation p.E510K 0.36 deleterious(0) possibly_damaging(0.856) TCGA-EE-A3AF-06 X 100911449 100911449 G A ARMCX2 Missense_Mutation p.P376S 0.41 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AF-06 X 102333542 102333542 C T NXF3 Missense_Mutation p.G466D 0.31 tolerated(0.36) benign(0.346) TCGA-EE-A3AF-06 X 102508793 102508793 C T TCEAL8 Missense_Mutation p.E39K 0.38 tolerated(0.68) benign(0.058) TCGA-EE-A3AF-06 X 102754975 102754975 C T RAB40A Missense_Mutation p.R237Q 0.34 tolerated_low_confidence(0.09) benign(0) TCGA-EE-A3AF-06 X 102884995 102884995 G A TCEAL1 Missense_Mutation p.E51K 0.47 tolerated_low_confidence(0.08) benign(0.025) TCGA-EE-A3AF-06 X 105152766 105152766 G A NRK Missense_Mutation p.R379K 0.29 deleterious(0.04) possibly_damaging(0.789) TCGA-EE-A3AF-06 X 106840838 106840838 C T FRMPD3 Missense_Mutation p.P610S 0.29 tolerated_low_confidence(0.13) benign(0.013) TCGA-EE-A3AF-06 X 106959954 106959954 C T TSC22D3 Intron 0.30 TCGA-EE-A3AF-06 X 107979255 107979255 G A IRS4 Missense_Mutation p.A107V 0.30 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AF-06 X 108718992 108718992 C T GUCY2F Silent p.V58V 0.42 TCGA-EE-A3AF-06 X 109414665 109414665 C T TMEM164 Missense_Mutation p.P202S 0.34 tolerated(0.1) possibly_damaging(0.548) TCGA-EE-A3AF-06 X 109414666 109414666 C T TMEM164 Missense_Mutation p.P202L 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3AF-06 X 110497615 110497615 G A CAPN6 Missense_Mutation p.P61L 0.40 deleterious(0) probably_damaging(0.975) TCGA-EE-A3AF-06 X 111020051 111020051 C T TRPC5 Silent p.K804K 0.41 TCGA-EE-A3AF-06 X 111195442 111195442 C A TRPC5 Missense_Mutation p.L69F 0.33 deleterious(0.02) probably_damaging(1) TCGA-EE-A3AF-06 X 11162261 11162288 TTGTTGTCATAAGGGGAGATGTCTCCGC - ARHGAP6 Frame_Shift_Del p.S663Tfs*71 0.30 TCGA-EE-A3AF-06 X 111698246 111698246 A T ZCCHC16 Missense_Mutation p.K97I 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AF-06 X 11272674 11272674 G A ARHGAP6 Missense_Mutation p.P248S 0.32 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A3AF-06 X 117032885 117032885 G A KLHL13 Missense_Mutation p.L655F 0.36 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A3AF-06 X 117043967 117043967 C T KLHL13 Silent p.K224K 0.34 TCGA-EE-A3AF-06 X 117529212 117529212 G A WDR44 Missense_Mutation p.E320K 0.47 deleterious(0.05) benign(0.369) TCGA-EE-A3AF-06 X 117880926 117880926 C T IL13RA1 Missense_Mutation p.P80S 0.24 tolerated(0.15) benign(0.404) TCGA-EE-A3AF-06 X 117880927 117880927 C T IL13RA1 Missense_Mutation p.P80L 0.24 tolerated(0.15) benign(0.019) TCGA-EE-A3AF-06 X 119389153 119389153 G A ZBTB33 Missense_Mutation p.G628E 0.38 tolerated(0.3) benign(0.037) TCGA-EE-A3AF-06 X 122747528 122747528 G A THOC2 Missense_Mutation p.P1494L 0.32 tolerated_low_confidence(0.33) benign(0) TCGA-EE-A3AF-06 X 12722489 12722489 G A FRMPD4 Missense_Mutation p.G361E 0.32 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 X 128692675 128692675 C T OCRL Nonsense_Mutation p.Q169* 0.37 TCGA-EE-A3AF-06 X 129173184 129173184 C T BCORL1 Silent p.P1515P 0.25 TCGA-EE-A3AF-06 X 134983803 134983803 C T SAGE1 Missense_Mutation p.S58L 0.45 deleterious(0) benign(0.142) TCGA-EE-A3AF-06 X 135288739 135288739 G A FHL1 Missense_Mutation p.D50N 0.33 tolerated(0.12) probably_damaging(0.981) TCGA-EE-A3AF-06 X 135480078 135480078 G A GPR112 Silent p.Q2741Q 0.31 TCGA-EE-A3AF-06 X 135480089 135480089 T G GPR112 Missense_Mutation p.L2745R 0.31 deleterious(0) probably_damaging(0.934) TCGA-EE-A3AF-06 X 136649796 136649796 G T ZIC3 Missense_Mutation p.V316F 0.40 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AF-06 X 138697087 138697087 G A MCF2 Missense_Mutation p.P499L 0.37 deleterious(0) benign(0.027) TCGA-EE-A3AF-06 X 140995273 140995273 C T MAGEC1 Missense_Mutation p.P695S 0.31 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A3AF-06 X 141291015 141291015 C T MAGEC2 Silent p.L253L 0.38 TCGA-EE-A3AF-06 X 142596795 142596795 G A SPANXN3 Missense_Mutation p.S92F 0.33 tolerated(0.74) benign(0.001) TCGA-EE-A3AF-06 X 1497607 1497607 C T IL3RA Silent p.I310I 0.31 TCGA-EE-A3AF-06 X 151532974 151532974 G A GABRA3 Silent p.L23L 0.33 TCGA-EE-A3AF-06 X 152770096 152770096 C T BGN Missense_Mutation p.P3S 0.28 tolerated_low_confidence(0.28) benign(0.011) TCGA-EE-A3AF-06 X 153041612 153041612 C T PLXNB3 Nonsense_Mutation p.Q1581* 0.20 TCGA-EE-A3AF-06 X 153053350 153053350 G A IDH3G Silent p.T156T 0.35 TCGA-EE-A3AF-06 X 153053351 153053351 G A IDH3G Missense_Mutation p.T156I 0.34 deleterious(0) possibly_damaging(0.842) TCGA-EE-A3AF-06 X 153070250 153070250 C T PDZD4 Missense_Mutation p.E290K 0.30 tolerated(0.11) probably_damaging(0.931) TCGA-EE-A3AF-06 X 153628653 153628653 C T RPL10 Intron 0.34 TCGA-EE-A3AF-06 X 153716663 153716663 G A SLC10A3 Missense_Mutation p.S206L 0.34 deleterious(0) benign(0.013) TCGA-EE-A3AF-06 X 15373285 15373285 G A FIGF Missense_Mutation p.P210S 0.28 tolerated(0.07) benign(0.014) TCGA-EE-A3AF-06 X 15373286 15373286 G A FIGF Silent p.I209I 0.29 TCGA-EE-A3AF-06 X 154157306 154157306 C T F8 Missense_Mutation p.D1587N 0.44 tolerated(0.17) benign(0.007) TCGA-EE-A3AF-06 X 154299795 154299795 G A BRCC3 5'UTR 0.38 TCGA-EE-A3AF-06 X 17746076 17746076 G A NHS Missense_Mutation p.D1263N 0.28 tolerated_low_confidence(0.11) benign(0.011) TCGA-EE-A3AF-06 X 19983446 19983446 C T CXorf23 Silent p.G330G 0.31 TCGA-EE-A3AF-06 X 24006997 24006997 G A KLHL15 Nonsense_Mutation p.R286* 0.34 TCGA-EE-A3AF-06 X 24227093 24227093 C T ZFX Silent p.L390L 0.33 TCGA-EE-A3AF-06 X 25033751 25033751 C T ARX Missense_Mutation p.R35Q 0.48 deleterious(0) unknown(0) TCGA-EE-A3AF-06 X 26213312 26213312 C T MAGEB6 3'UTR 0.29 TCGA-EE-A3AF-06 X 295174 295174 C T PPP2R3B Silent p.E552E 0.35 TCGA-EE-A3AF-06 X 30260652 30260652 G A MAGEB4 Missense_Mutation p.E134K 0.28 deleterious(0.05) possibly_damaging(0.649) TCGA-EE-A3AF-06 X 3028281 3028281 C T ARSF Missense_Mutation p.P460S 0.34 deleterious(0.01) benign(0.363) TCGA-EE-A3AF-06 X 3229630 3229630 G A MXRA5 Missense_Mutation p.T2205I 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AF-06 X 3235667 3235667 C T MXRA5 Missense_Mutation p.D2019N 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 X 34148254 34148254 C T FAM47A Silent p.L714L 0.38 TCGA-EE-A3AF-06 X 34150173 34150173 C T FAM47A Missense_Mutation p.E75K 0.32 tolerated(0.06) possibly_damaging(0.466) TCGA-EE-A3AF-06 X 34962619 34962619 G A FAM47B Silent p.L557L 0.40 TCGA-EE-A3AF-06 X 37545256 37545256 C T XK Silent p.F14F 0.38 TCGA-EE-A3AF-06 X 39923709 39923709 G A BCOR Missense_Mutation p.P1128S 0.22 tolerated(0.17) benign(0.003) TCGA-EE-A3AF-06 X 41007791 41007791 G A USP9X Missense_Mutation p.S530N 0.38 tolerated(0.49) benign(0.001) TCGA-EE-A3AF-06 X 41205589 41205589 C T DDX3X Missense_Mutation p.R475C 0.31 deleterious(0) possibly_damaging(0.502) TCGA-EE-A3AF-06 X 43809112 43809112 C T NDP Missense_Mutation p.G112E 0.45 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A3AF-06 X 47102899 47102899 C T USP11 Missense_Mutation p.S606F 0.45 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AF-06 X 47230013 47230013 C T ZNF157 5'UTR 0.24 TCGA-EE-A3AF-06 X 47836430 47836430 T G ZNF182 Silent p.G352G 0.28 TCGA-EE-A3AF-06 X 47918541 47918541 G A ZNF630 Silent p.P430P 0.54 TCGA-EE-A3AF-06 X 48372657 48372657 C T PORCN Missense_Mutation p.S250F 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AF-06 X 48652280 48652280 G A GATA1 Silent p.R317R 0.52 TCGA-EE-A3AF-06 X 48652475 48652475 C T GATA1 Silent p.F382F 0.26 TCGA-EE-A3AF-06 X 48681659 48681659 G A HDAC6 Silent p.Q950Q 0.47 TCGA-EE-A3AF-06 X 49143587 49143587 G A PPP1R3F 3'UTR 0.39 TCGA-EE-A3AF-06 X 50339751 50339751 C T SHROOM4 Missense_Mutation p.E1476K 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AF-06 X 50339752 50339752 C T SHROOM4 Silent p.G1475G 0.40 TCGA-EE-A3AF-06 X 52896107 52896107 G A XAGE3 Missense_Mutation p.P20S 0.35 tolerated(0.32) probably_damaging(0.96) TCGA-EE-A3AF-06 X 53460832 53460832 C T HSD17B10 Missense_Mutation p.G10D 0.42 tolerated(0.25) probably_damaging(0.999) TCGA-EE-A3AF-06 X 53576162 53576162 C T HUWE1 Missense_Mutation p.E3265K 0.34 benign(0.001) TCGA-EE-A3AF-06 X 54784030 54784030 G A ITIH6 Missense_Mutation p.P826L 0.35 deleterious(0) benign(0.058) TCGA-EE-A3AF-06 X 54784031 54784031 G A ITIH6 Missense_Mutation p.P826S 0.36 tolerated(0.26) benign(0.003) TCGA-EE-A3AF-06 X 68059536 68059536 G A EFNB1 Missense_Mutation p.E146K 0.45 tolerated(0.05) possibly_damaging(0.826) TCGA-EE-A3AF-06 X 69649817 69649817 G A GDPD2 Missense_Mutation p.G404E 0.41 tolerated(0.16) benign(0.046) TCGA-EE-A3AF-06 X 69665393 69665393 G A DLG3 Silent p.R114R 0.54 TCGA-EE-A3AF-06 X 70147780 70147780 G A SLC7A3 Missense_Mutation p.S304F 0.28 deleterious(0) possibly_damaging(0.797) TCGA-EE-A3AF-06 X 70343562 70343562 C T MED12 Missense_Mutation p.P579L 0.30 probably_damaging(0.988) TCGA-EE-A3AF-06 X 71360568 71360568 A T NHSL2 Missense_Mutation p.Q1057L 0.44 tolerated(0.3) benign(0.002) TCGA-EE-A3AF-06 X 73962795 73962795 G A KIAA2022 Missense_Mutation p.R533C 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3AF-06 X 77155057 77155057 C T COX7B Missense_Mutation p.P3S 0.39 tolerated(0.18) benign(0.099) TCGA-EE-A3AF-06 X 77218212 77218212 G A ATP7A Intron 0.40 TCGA-EE-A3AF-06 X 77913440 77913440 C T ZCCHC5 Missense_Mutation p.D160N 0.36 tolerated(0.43) benign(0.007) TCGA-EE-A3AF-06 X 79282782 79282782 C T TBX22 Missense_Mutation p.P276S 0.36 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AF-06 X 79698072 79698072 G A FAM46D Missense_Mutation p.D12N 0.31 deleterious(0.01) possibly_damaging(0.9) TCGA-EE-A3AF-06 X 82763742 82763742 C T POU3F4 Missense_Mutation p.P137L 0.53 deleterious(0.01) benign(0.008) TCGA-EE-A3AF-06 X 83359608 83359608 A G RPS6KA6 Silent p.L505L 0.28 TCGA-EE-A3AF-06 X 88008617 88008617 G A CPXCR1 Missense_Mutation p.E68K 0.34 tolerated(0.1) benign(0.017) TCGA-EE-A3AF-06 X 9900605 9900605 C T SHROOM2 Silent p.F1094F 0.45 TCGA-EE-A3AF-06 X 99956463 99956463 G A SYTL4 Missense_Mutation p.A106V 0.32 tolerated(0.18) benign(0.046) TCGA-EE-A3AG-06 10 101715157 101715157 G A DNMBP Missense_Mutation p.P692S 1.00 tolerated(0.25) benign(0.026) TCGA-EE-A3AG-06 10 101715158 101715158 G A DNMBP Silent p.C691C 1.00 TCGA-EE-A3AG-06 10 101835787 101835787 C T CPN1 Missense_Mutation p.E101K 0.74 deleterious(0.02) possibly_damaging(0.809) TCGA-EE-A3AG-06 10 102289628 102289628 C T NDUFB8 5'Flank 0.89 TCGA-EE-A3AG-06 10 102799263 102799263 A G SFXN3 Missense_Mutation p.N300S 0.81 tolerated(1) benign(0) TCGA-EE-A3AG-06 10 1054962 1054962 C T GTPBP4 Missense_Mutation p.S393F 0.66 deleterious(0.04) benign(0.057) TCGA-EE-A3AG-06 10 106074292 106074292 G A ITPRIP Silent p.F506F 0.80 TCGA-EE-A3AG-06 10 106937871 106937871 C T SORCS3 Missense_Mutation p.S650L 0.86 tolerated(0.1) benign(0.002) TCGA-EE-A3AG-06 10 11505568 11505568 G A USP6NL Silent p.L470L 0.55 TCGA-EE-A3AG-06 10 115374691 115374691 T C NRAP Silent p.E1031E 0.88 TCGA-EE-A3AG-06 10 116049157 116049157 G A VWA2 Silent p.R677R 0.90 TCGA-EE-A3AG-06 10 116067573 116067573 C T AFAP1L2 Missense_Mutation p.E355K 0.80 tolerated(0.07) possibly_damaging(0.862) TCGA-EE-A3AG-06 10 119013971 119013971 G A SLC18A2 Missense_Mutation p.M221I 0.84 tolerated(0.07) benign(0.012) TCGA-EE-A3AG-06 10 125521433 125521433 C T CPXM2 Missense_Mutation p.E578K 1.00 tolerated(0.63) possibly_damaging(0.676) TCGA-EE-A3AG-06 10 128114453 128114453 G A C10orf90 Missense_Mutation p.L694F 0.90 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 10 128114454 128114454 G A C10orf90 Silent p.L693L 0.86 TCGA-EE-A3AG-06 10 13330474 13330474 G A PHYH Silent p.L188L 0.65 TCGA-EE-A3AG-06 10 13380726 13380726 G A SEPHS1 Silent p.I92I 0.28 TCGA-EE-A3AG-06 10 133948557 133948557 G A JAKMIP3 Missense_Mutation p.D288N 0.86 deleterious(0) possibly_damaging(0.813) TCGA-EE-A3AG-06 10 133954054 133954054 C T JAKMIP3 Missense_Mutation p.P482S 0.92 tolerated(0.1) possibly_damaging(0.856) TCGA-EE-A3AG-06 10 134896174 134896174 G A GPR123-AS1 3'Flank 0.77 TCGA-EE-A3AG-06 10 134942980 134942980 C T GPR123 Nonsense_Mutation p.R550* 0.93 TCGA-EE-A3AG-06 10 135350625 135350625 G A CYP2E1 Silent p.K342K 0.42 TCGA-EE-A3AG-06 10 1406045 1406045 G A ADARB2 Silent p.S85S 0.33 TCGA-EE-A3AG-06 10 14816702 14816702 G A FAM107B 5'UTR 0.39 TCGA-EE-A3AG-06 10 15254736 15254736 C T FAM171A1 3'UTR 0.50 TCGA-EE-A3AG-06 10 15317887 15317887 C T FAM171A1 Missense_Mutation p.E129K 0.20 deleterious(0) possibly_damaging(0.472) TCGA-EE-A3AG-06 10 16967596 16967596 C T CUBN Missense_Mutation p.G2150E 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 10 20500617 20500617 C T PLXDC2 Missense_Mutation p.R361C 0.56 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AG-06 10 21120197 21120197 C T NEBL Silent p.G533G 0.23 TCGA-EE-A3AG-06 10 25887866 25887866 G A GPR158 Missense_Mutation p.G1104E 0.27 tolerated(1) benign(0.004) TCGA-EE-A3AG-06 10 26508071 26508071 C T GAD2 Missense_Mutation p.S129L 0.23 deleterious(0.01) benign(0.296) TCGA-EE-A3AG-06 10 27702640 27702640 C T PTCHD3 Silent p.A180A 0.65 TCGA-EE-A3AG-06 10 28023391 28023391 G A MKX Missense_Mutation p.R278C 0.64 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AG-06 10 28272861 28272861 G A ARMC4 Missense_Mutation p.R244C 0.57 deleterious(0.02) benign(0.339) TCGA-EE-A3AG-06 10 30315884 30315884 C T KIAA1462 Missense_Mutation p.E1065K 0.26 deleterious(0.03) benign(0.39) TCGA-EE-A3AG-06 10 30316043 30316043 C A KIAA1462 Missense_Mutation p.V1012L 0.60 tolerated(0.17) benign(0.081) TCGA-EE-A3AG-06 10 30901757 30901757 T A LYZL2 Missense_Mutation p.N170I 0.23 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A3AG-06 10 35857996 35857996 C T CCNY Silent p.L308L 0.59 TCGA-EE-A3AG-06 10 37441020 37441020 G A ANKRD30A Missense_Mutation p.D504N 0.19 deleterious(0.02) benign(0.089) TCGA-EE-A3AG-06 10 43869162 43869162 C T FXYD4 5'UTR 0.24 TCGA-EE-A3AG-06 10 44874015 44874015 C T CXCL12 Intron 0.58 TCGA-EE-A3AG-06 10 45430529 45430529 C T TMEM72 Missense_Mutation p.P259S 0.19 tolerated(0.11) benign(0.01) TCGA-EE-A3AG-06 10 45496277 45496277 G A C10orf25 Missense_Mutation p.R11C 0.17 tolerated_low_confidence(0.18) benign(0.002) TCGA-EE-A3AG-06 10 45602574 45602574 C T RSU1P2 RNA 0.46 TCGA-EE-A3AG-06 10 48371305 48371305 C T ZNF488 Missense_Mutation p.S258L 0.63 deleterious(0) probably_damaging(0.953) TCGA-EE-A3AG-06 10 49667799 49667799 A T ARHGAP22 Missense_Mutation p.M212K 0.58 deleterious(0) benign(0.037) TCGA-EE-A3AG-06 10 50121768 50121768 C T LRRC18 Missense_Mutation p.E145K 0.21 tolerated(0.06) benign(0.065) TCGA-EE-A3AG-06 10 50952113 50952113 G A OGDHL Silent p.I596I 0.61 TCGA-EE-A3AG-06 10 53458235 53458235 G A CSTF2T Missense_Mutation p.H359Y 0.54 deleterious_low_confidence(0.05) possibly_damaging(0.885) TCGA-EE-A3AG-06 10 53458236 53458236 G A CSTF2T Silent p.P358P 0.55 TCGA-EE-A3AG-06 10 54531369 54531369 G A MBL2 Silent p.L9L 0.50 TCGA-EE-A3AG-06 10 55591294 55591294 C T PCDH15 Splice_Site p.X1328_splice 0.66 TCGA-EE-A3AG-06 10 55700729 55700729 A C PCDH15 Silent p.P1043P 0.64 TCGA-EE-A3AG-06 10 5979201 5979201 C T FBXO18 Silent p.I1081I 0.80 TCGA-EE-A3AG-06 10 70645751 70645751 T C STOX1 Silent p.S733S 0.52 TCGA-EE-A3AG-06 10 71707091 71707091 G A COL13A1 Missense_Mutation p.G673E 0.88 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 10 72298087 72298087 G A PALD1 Missense_Mutation p.E459K 0.83 tolerated(0.31) benign(0.087) TCGA-EE-A3AG-06 10 76855425 76855425 C T DUSP13 Missense_Mutation p.G151D 0.87 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 10 85991612 85991612 C T LRIT1 3'UTR 0.86 TCGA-EE-A3AG-06 10 86131800 86131800 C T CCSER2 Missense_Mutation p.S331F 0.84 deleterious(0.03) possibly_damaging(0.452) TCGA-EE-A3AG-06 10 94268591 94268591 G A IDE Silent p.P318P 0.81 TCGA-EE-A3AG-06 10 95380655 95380655 C T PDE6C Missense_Mutation p.S214F 0.86 tolerated(0.06) benign(0.009) TCGA-EE-A3AG-06 10 96612670 96612670 G A CYP2C19 Silent p.%3D 0.93 TCGA-EE-A3AG-06 10 96731876 96731876 C T CYP2C9 Missense_Mutation p.P279S 0.79 tolerated(0.18) benign(0) TCGA-EE-A3AG-06 10 97111052 97111052 G A SORBS1 Missense_Mutation p.P766S 0.87 deleterious(0) possibly_damaging(0.627) TCGA-EE-A3AG-06 10 97397094 97397094 G A ALDH18A1 Nonsense_Mutation p.Q135* 0.11 TCGA-EE-A3AG-06 10 99771025 99771025 C A CRTAC1 Nonsense_Mutation p.E32* 0.46 TCGA-EE-A3AG-06 11 100179157 100179157 G A CNTN5 Nonsense_Mutation p.W896* 0.86 TCGA-EE-A3AG-06 11 100999145 100999145 C T PGR Silent p.V219V 0.88 TCGA-EE-A3AG-06 11 103026069 103026069 C T DYNC2H1 Missense_Mutation p.P1195S 0.81 probably_damaging(0.944) TCGA-EE-A3AG-06 11 105789611 105789611 C T GRIA4 Silent p.I481I 0.88 TCGA-EE-A3AG-06 11 107677459 107677459 C T SLC35F2 Silent p.G186G 0.81 TCGA-EE-A3AG-06 11 108031638 108031638 G A NPAT Missense_Mutation p.S1392L 0.96 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AG-06 11 113265676 113265676 G A ANKK1 Nonsense_Mutation p.W169* 0.91 TCGA-EE-A3AG-06 11 113857256 113857256 G A HTR3A Missense_Mutation p.R247Q 0.83 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 11 114401269 114401269 C T NXPE1 Missense_Mutation p.G12E 0.76 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A3AG-06 11 116824823 116824823 C T SIK3 Missense_Mutation p.V73I 0.86 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 11 117166040 117166040 C T BACE1 Missense_Mutation p.R125Q 0.80 tolerated(0.11) benign(0.027) TCGA-EE-A3AG-06 11 117376407 117376407 G A DSCAML1 Silent p.S668S 0.91 TCGA-EE-A3AG-06 11 119181572 119181572 C G MCAM Missense_Mutation p.V563L 0.25 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 11 119214621 119214621 G A MFRP Silent p.F343F 0.92 TCGA-EE-A3AG-06 11 119217303 119217303 C T MFRP 5'UTR 1.00 TCGA-EE-A3AG-06 11 11985893 11985893 G A DKK3 3'UTR 0.45 TCGA-EE-A3AG-06 11 119991312 119991312 C T TRIM29 Silent p.Q499Q 0.83 TCGA-EE-A3AG-06 11 120180244 120180244 C T POU2F3 Silent p.I341I 0.68 TCGA-EE-A3AG-06 11 121008598 121008598 C T TECTA Missense_Mutation p.S1137F 0.96 tolerated(0.05) benign(0.098) TCGA-EE-A3AG-06 11 121039497 121039497 G A TECTA Silent p.T1954T 0.80 TCGA-EE-A3AG-06 11 12315811 12315811 G A MICALCL Missense_Mutation p.R278Q 0.58 deleterious(0.02) possibly_damaging(0.821) TCGA-EE-A3AG-06 11 124489263 124489263 C T PANX3 Missense_Mutation p.S204L 0.92 tolerated(0.63) benign(0.048) TCGA-EE-A3AG-06 11 125221269 125221269 C T PKNOX2 Missense_Mutation p.P23L 1.00 deleterious_low_confidence(0.03) benign(0.045) TCGA-EE-A3AG-06 11 1271018 1271018 G A MUC5B Missense_Mutation p.R4303K 0.40 benign(0.001) TCGA-EE-A3AG-06 11 1272721 1272721 C T MUC5B Silent p.L4871L 0.41 TCGA-EE-A3AG-06 11 129734737 129734737 G A NFRKB Silent p.I1286I 0.84 TCGA-EE-A3AG-06 11 130066311 130066311 C T ST14 Silent p.C397C 0.60 TCGA-EE-A3AG-06 11 14526784 14526784 G A PSMA1 Missense_Mutation p.P255L 0.29 deleterious(0.02) benign(0.022) TCGA-EE-A3AG-06 11 1642816 1642816 A C KRTAP5-4 Missense_Mutation p.C170G 0.38 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AG-06 11 16812687 16812687 G A PLEKHA7 Silent p.P935P 0.30 TCGA-EE-A3AG-06 11 16816454 16816454 C T PLEKHA7 Intron 0.54 TCGA-EE-A3AG-06 11 16838358 16838358 G A PLEKHA7 Missense_Mutation p.H619Y 0.29 tolerated(0.11) benign(0.009) TCGA-EE-A3AG-06 11 17143761 17143761 A G PIK3C2A Silent p.D877D 0.30 TCGA-EE-A3AG-06 11 1718543 1718557 GCTGTGGGTCCAGCT - KRTAP5-6 In_Frame_Del p.G25_C29del 0.30 TCGA-EE-A3AG-06 11 17523497 17523497 G A USH1C Missense_Mutation p.P739S 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3AG-06 11 18062275 18062275 G A TPH1 Missense_Mutation p.S12F 0.15 deleterious(0) benign(0.151) TCGA-EE-A3AG-06 11 18472617 18472617 C T LDHC Silent p.A314A 0.54 TCGA-EE-A3AG-06 11 18472679 18472679 A T LDHC 3'UTR 0.35 TCGA-EE-A3AG-06 11 1858493 1858493 C T SYT8 Silent p.H346H 0.65 TCGA-EE-A3AG-06 11 18596940 18596940 C T UEVLD Silent p.Q49Q 0.58 TCGA-EE-A3AG-06 11 18633904 18633904 T G SPTY2D1 Missense_Mutation p.I615L 0.62 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AG-06 11 18759452 18759452 C T PTPN5 Silent p.K325K 0.53 TCGA-EE-A3AG-06 11 20648277 20648277 C T SLC6A5 Silent p.F428F 0.63 TCGA-EE-A3AG-06 11 20805360 20805360 C T NELL1 Nonsense_Mutation p.R107* 0.66 TCGA-EE-A3AG-06 11 2181029 2181029 C T INS 3'UTR 0.54 TCGA-EE-A3AG-06 11 22399035 22399035 G A SLC17A6 Missense_Mutation p.G500R 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 11 22399270 22399270 G A SLC17A6 Missense_Mutation p.R578Q 0.36 tolerated(0.47) benign(0.001) TCGA-EE-A3AG-06 11 2436006 2436006 C T TRPM5 Silent p.L561L 0.36 TCGA-EE-A3AG-06 11 26569067 26569067 G A ANO3 Missense_Mutation p.G420E 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 11 31115625 31115625 G A DCDC1 Missense_Mutation p.P697L 0.56 deleterious(0) possibly_damaging(0.87) TCGA-EE-A3AG-06 11 34664228 34664228 C T EHF Silent p.L39L 0.31 TCGA-EE-A3AG-06 11 36615435 36615435 C T RAG2 Missense_Mutation p.G95E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 11 3685408 3685408 G A ART1 Missense_Mutation p.G325S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 11 4471211 4471211 C T OR52K2 Silent p.L214L 0.26 TCGA-EE-A3AG-06 11 4510609 4510609 C T OR52K1 Missense_Mutation p.P160L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 11 46702650 46702650 G A ARHGAP1 Silent p.F182F 0.26 TCGA-EE-A3AG-06 11 46766034 46766034 G A CKAP5 Missense_Mutation p.S1933F 0.27 tolerated(0.11) benign(0.045) TCGA-EE-A3AG-06 11 4703277 4703277 C T OR51E2 Missense_Mutation p.R222Q 0.40 tolerated(0.14) benign(0.017) TCGA-EE-A3AG-06 11 47330884 47330884 C T MADD Silent p.F1328F 0.70 TCGA-EE-A3AG-06 11 47444385 47444385 G A PSMC3 Missense_Mutation p.T244I 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AG-06 11 47656245 47656245 G A MTCH2 Silent p.S116S 0.22 TCGA-EE-A3AG-06 11 48239290 48239290 G A OR4B1 Silent p.%3D 0.62 TCGA-EE-A3AG-06 11 48266696 48266696 A C OR4X2 Missense_Mutation p.E14A 0.24 tolerated(0.11) benign(0.066) TCGA-EE-A3AG-06 11 48266881 48266881 G A OR4X2 Missense_Mutation p.D76N 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AG-06 11 48346564 48346564 C T OR4C3 Silent p.T24T 0.31 TCGA-EE-A3AG-06 11 48346987 48346987 C T OR4C3 Silent p.L165L 0.20 TCGA-EE-A3AG-06 11 48510455 48510455 G A OR4A47 Missense_Mutation p.M37I 0.62 tolerated_low_confidence(0.19) benign(0.003) TCGA-EE-A3AG-06 11 4869782 4869782 C A OR51S1 Silent p.L219L 0.46 TCGA-EE-A3AG-06 11 49597918 49597918 T A RP11-707M1.1 RNA 0.70 TCGA-EE-A3AG-06 11 5012667 5012667 C T MMP26 Missense_Mutation p.S179F 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A3AG-06 11 5173450 5173450 G A OR52A1 Silent p.I50I 0.47 TCGA-EE-A3AG-06 11 5322332 5322332 G A OR51B4 Missense_Mutation p.P282L 0.43 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A3AG-06 11 55406571 55406571 C T OR4P4 Silent p.V246V 0.37 TCGA-EE-A3AG-06 11 55563802 55563802 C T OR5D14 Silent p.I257I 0.38 TCGA-EE-A3AG-06 11 55587893 55587893 C A OR5D18 Missense_Mutation p.P263H 0.26 deleterious(0) possibly_damaging(0.816) TCGA-EE-A3AG-06 11 55606570 55606570 A T OR5D16 Missense_Mutation p.I115F 0.41 tolerated(1) benign(0) TCGA-EE-A3AG-06 11 55927433 55927433 C T OR8K5 Missense_Mutation p.D121N 0.47 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-EE-A3AG-06 11 56000154 56000154 G A OR5T2 Silent p.L170L 0.44 TCGA-EE-A3AG-06 11 56020462 56020462 G A OR5T3 Missense_Mutation p.G263R 0.45 deleterious(0.04) possibly_damaging(0.651) TCGA-EE-A3AG-06 11 56020467 56020467 G A OR5T3 Silent p.R264R 0.45 TCGA-EE-A3AG-06 11 56380885 56380885 G A OR5M1 Missense_Mutation p.L32F 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AG-06 11 56468464 56468464 C T OR9G1 Silent p.L201L 0.18 TCGA-EE-A3AG-06 11 57004301 57004301 T C APLNR Missense_Mutation p.K60E 0.63 tolerated(0.08) possibly_damaging(0.595) TCGA-EE-A3AG-06 11 57156618 57156618 G A PRG2 Silent p.I77I 0.64 TCGA-EE-A3AG-06 11 5809841 5809841 G A OR52N1 Missense_Mutation p.S69F 0.41 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AG-06 11 58206865 58206865 T A OR5B12 Missense_Mutation p.I254F 0.65 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-EE-A3AG-06 11 59480591 59480591 G A OR10V1 Missense_Mutation p.S243F 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 11 60635174 60635174 G A ZP1 Missense_Mutation p.G47E 0.68 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 11 6129374 6129374 C T OR56B4 Silent p.L122L 0.44 TCGA-EE-A3AG-06 11 61507965 61507965 T C DAGLA Silent p.F628F 0.36 TCGA-EE-A3AG-06 11 615225 615225 G A IRF7 Missense_Mutation p.L32F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 11 61543821 61543821 G A MYRF Silent p.T472T 0.53 TCGA-EE-A3AG-06 11 61643405 61643405 G A FADS3 Missense_Mutation p.P402S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 11 61674936 61674936 G A RAB3IL1 Missense_Mutation p.H123Y 0.31 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 11 61727035 61727035 C T BEST1 Silent p.V251V 0.58 TCGA-EE-A3AG-06 11 62291668 62291668 G A AHNAK Silent p.F3407F 0.61 TCGA-EE-A3AG-06 11 62298472 62298472 G A AHNAK Silent p.L1139L 0.58 TCGA-EE-A3AG-06 11 62389381 62389381 G A B3GAT3 Silent p.F13F 0.55 TCGA-EE-A3AG-06 11 62398174 62398174 C T GANAB Missense_Mutation p.D451N 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 11 62592792 62592792 G A STX5 Missense_Mutation p.S187F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 11 62601757 62601757 G A WDR74 Missense_Mutation p.L256F 0.59 tolerated(0.22) benign(0.076) TCGA-EE-A3AG-06 11 6261637 6261637 G A CNGA4 Missense_Mutation p.D205N 0.43 tolerated(1) benign(0.003) TCGA-EE-A3AG-06 11 62744233 62744233 C T SLC22A6 3'UTR 0.61 TCGA-EE-A3AG-06 11 63235936 63235936 C T HRASLS5 Missense_Mutation p.G126E 0.64 tolerated(0.14) possibly_damaging(0.876) TCGA-EE-A3AG-06 11 63884858 63884858 C T FLRT1 Silent p.S373S 0.48 TCGA-EE-A3AG-06 11 64428249 64428249 A T NRXN2 Missense_Mutation p.F721I 0.21 deleterious(0) benign(0.008) TCGA-EE-A3AG-06 11 64568600 64568600 G A MAP4K2 Silent p.F171F 0.65 TCGA-EE-A3AG-06 11 64622318 64622318 C T EHD1 Silent p.Q364Q 0.27 TCGA-EE-A3AG-06 11 64645688 64645688 G A EHD1 Silent p.F83F 0.60 TCGA-EE-A3AG-06 11 64722257 64722257 T G C11orf85 Missense_Mutation p.N40T 0.30 tolerated(0.07) benign(0.03) TCGA-EE-A3AG-06 11 64756792 64756792 C T BATF2 Missense_Mutation p.E212K 0.48 tolerated(0.06) benign(0.071) TCGA-EE-A3AG-06 11 64985083 64985083 C T SLC22A20 RNA 0.41 TCGA-EE-A3AG-06 11 65385642 65385642 G A PCNXL3 Missense_Mutation p.R270Q 0.09 tolerated(0.1) benign(0.085) TCGA-EE-A3AG-06 11 65623156 65623156 G T CFL1 Missense_Mutation p.S119R 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3AG-06 11 65715116 65715116 A T TSGA10IP RNA 0.62 TCGA-EE-A3AG-06 11 65790384 65790384 G A CATSPER1 Silent p.F455F 0.23 TCGA-EE-A3AG-06 11 65793566 65793566 G A CATSPER1 Silent p.G95G 0.54 TCGA-EE-A3AG-06 11 65811014 65811014 G A GAL3ST3 Missense_Mutation p.A87V 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-EE-A3AG-06 11 66105737 66105737 G A BRMS1 Missense_Mutation p.S237F 0.46 deleterious(0.02) probably_damaging(0.923) TCGA-EE-A3AG-06 11 66321562 66321562 C T CTD-3074O7.2 3'Flank 0.32 TCGA-EE-A3AG-06 11 66571646 66571646 G A C11orf80 Silent p.R341R 0.45 TCGA-EE-A3AG-06 11 67410210 67410210 C T ACY3 Silent p.P315P 0.62 TCGA-EE-A3AG-06 11 68029501 68029501 G A C11orf24 Missense_Mutation p.S321F 0.61 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A3AG-06 11 68514739 68514739 G A MTL5 Silent p.F189F 0.63 TCGA-EE-A3AG-06 11 68658812 68658812 G A MRPL21 Missense_Mutation p.P202L 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 11 7063772 7063772 C T NLRP14 Missense_Mutation p.T172I 0.48 deleterious(0.05) benign(0.232) TCGA-EE-A3AG-06 11 71249795 71249795 G A KRTAP5-8 3'UTR 0.59 TCGA-EE-A3AG-06 11 71948326 71948326 C T INPPL1 Missense_Mutation p.T1013I 0.30 tolerated(0.25) benign(0.011) TCGA-EE-A3AG-06 11 72290592 72290592 G A PDE2A Missense_Mutation p.H748Y 0.28 deleterious(0.01) benign(0.397) TCGA-EE-A3AG-06 11 72300278 72300278 C T PDE2A Missense_Mutation p.G294R 0.25 deleterious(0.04) possibly_damaging(0.781) TCGA-EE-A3AG-06 11 72410593 72410593 G A ARAP1 Silent p.F769F 0.30 TCGA-EE-A3AG-06 11 73021159 73021159 G A ARHGEF17 Silent p.G492G 0.53 TCGA-EE-A3AG-06 11 74911427 74911427 C T SLCO2B1 Silent p.I586I 0.23 TCGA-EE-A3AG-06 11 74993017 74993017 C T ARRB1 Missense_Mutation p.D135N 0.33 deleterious(0.02) benign(0.103) TCGA-EE-A3AG-06 11 76255759 76255759 C T C11orf30 Missense_Mutation p.P1056S 0.20 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-EE-A3AG-06 11 76944136 76944136 C T GDPD4 Silent p.R441R 0.59 TCGA-EE-A3AG-06 11 77066759 77066759 C T PAK1 Silent p.Q242Q 0.56 TCGA-EE-A3AG-06 11 78369020 78369020 C T TENM4 3'UTR 0.58 TCGA-EE-A3AG-06 11 78399209 78399209 C T TENM4 Missense_Mutation p.R1717Q 0.30 deleterious(0.05) benign(0.18) TCGA-EE-A3AG-06 11 78412817 78412817 C T TENM4 Missense_Mutation p.G1614E 0.55 tolerated(0.42) benign(0.004) TCGA-EE-A3AG-06 11 794471 794471 G - SLC25A22 Frame_Shift_Del p.F63Lfs*9 0.14 TCGA-EE-A3AG-06 11 7981867 7981867 G A NLRP10 Missense_Mutation p.A431V 0.43 tolerated(0.21) benign(0.101) TCGA-EE-A3AG-06 11 8008854 8008854 C T EIF3F 5'UTR 0.41 TCGA-EE-A3AG-06 11 804257 804257 G A PIDD Silent p.P44P 0.21 TCGA-EE-A3AG-06 11 804258 804258 G A PIDD Missense_Mutation p.P44L 0.24 tolerated(0.11) benign(0.064) TCGA-EE-A3AG-06 11 92532464 92532464 G A FAT3 Silent p.V2095V 0.88 TCGA-EE-A3AG-06 11 93836140 93836140 C T HEPHL1 Missense_Mutation p.P879L 0.84 tolerated(0.53) probably_damaging(1) TCGA-EE-A3AG-06 11 93912978 93912978 C T PANX1 Silent p.I252I 0.91 TCGA-EE-A3AG-06 11 9459706 9459706 G A IPO7 Missense_Mutation p.V857I 0.48 tolerated(0.17) benign(0.13) TCGA-EE-A3AG-06 12 100657659 100657659 G A DEPDC4 Missense_Mutation p.P57L 0.55 deleterious(0) probably_damaging(0.911) TCGA-EE-A3AG-06 12 100806590 100806590 C T SLC17A8 Missense_Mutation p.S410L 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 12 101413856 101413856 G A ANO4 Missense_Mutation p.R225K 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 12 104048373 104048373 A T STAB2 Missense_Mutation p.K483M 0.64 deleterious(0.01) possibly_damaging(0.586) TCGA-EE-A3AG-06 12 104099426 104099426 G T STAB2 Missense_Mutation p.R1306I 0.51 tolerated(0.25) benign(0.203) TCGA-EE-A3AG-06 12 104713318 104713318 C T TXNRD1 Missense_Mutation p.P315L 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 12 105514922 105514922 C T KIAA1033 Missense_Mutation p.T202I 0.15 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AG-06 12 106824229 106824229 C G POLR3B Missense_Mutation p.P481R 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 12 108685743 108685743 G A CMKLR1 Missense_Mutation p.R333C 0.46 tolerated(0.07) probably_damaging(0.943) TCGA-EE-A3AG-06 12 108939021 108939021 G A SART3 Missense_Mutation p.S208F 0.52 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A3AG-06 12 10962331 10962331 G A TAS2R9 Missense_Mutation p.S115L 0.48 tolerated(0.09) possibly_damaging(0.488) TCGA-EE-A3AG-06 12 109692107 109692107 C T ACACB Missense_Mutation p.P2045L 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3AG-06 12 109936079 109936079 C T UBE3B Silent p.F287F 0.32 TCGA-EE-A3AG-06 12 111652089 111652089 G A CUX2 Missense_Mutation p.R50Q 0.68 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 12 112613616 112613616 T A HECTD4 Missense_Mutation p.I3694F 0.17 benign(0.019) TCGA-EE-A3AG-06 12 112688077 112688077 G A HECTD4 Missense_Mutation p.P1128L 0.57 possibly_damaging(0.464) TCGA-EE-A3AG-06 12 113303295 113303295 G A RPH3A Missense_Mutation p.E103K 0.62 deleterious(0) benign(0.396) TCGA-EE-A3AG-06 12 113824828 113824828 G A PLBD2 Missense_Mutation p.R458Q 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 12 113824829 113824829 G A PLBD2 Silent p.R458R 0.49 TCGA-EE-A3AG-06 12 11420704 11420704 C T PRB3 Missense_Mutation p.G160E 0.56 tolerated(0.13) unknown(0) TCGA-EE-A3AG-06 12 11420767 11420767 C T PRB3 Missense_Mutation p.G139E 0.42 tolerated(0.2) unknown(0) TCGA-EE-A3AG-06 12 114395671 114395671 G A RBM19 Silent p.V252V 0.52 TCGA-EE-A3AG-06 12 117681136 117681136 G A NOS1 Silent p.L1010L 0.26 TCGA-EE-A3AG-06 12 118827739 118827739 C T SUDS3 Silent p.F116F 0.40 TCGA-EE-A3AG-06 12 119540140 119540140 G A SRRM4 Nonsense_Mutation p.W77* 0.52 TCGA-EE-A3AG-06 12 119909887 119909887 C T CCDC60 Nonsense_Mutation p.Q87* 0.32 TCGA-EE-A3AG-06 12 120502529 120502529 C T CCDC64 Intron 0.67 TCGA-EE-A3AG-06 12 120586048 120586048 G A GCN1L1 Missense_Mutation p.S1550F 0.61 probably_damaging(0.998) TCGA-EE-A3AG-06 12 121098548 121098548 G A CABP1 Missense_Mutation p.D282N 0.26 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AG-06 12 121151120 121151120 C T UNC119B Silent p.F96F 0.34 TCGA-EE-A3AG-06 12 121622587 121622587 C T P2RX7 Silent p.G590G 0.22 TCGA-EE-A3AG-06 12 121932437 121932437 G A KDM2B Missense_Mutation p.P560L 0.37 deleterious(0.01) benign(0.341) TCGA-EE-A3AG-06 12 121972449 121972449 C A KDM2B Missense_Mutation p.D244Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 12 122669284 122669284 C T LRRC43 Silent p.F123F 0.29 TCGA-EE-A3AG-06 12 12279653 12279653 G A LRP6 Silent p.H1428H 0.59 TCGA-EE-A3AG-06 12 124191312 124191312 C T TCTN2 Silent p.T603T 0.58 TCGA-EE-A3AG-06 12 124270395 124270395 G A DNAH10 Missense_Mutation p.D384N 0.59 possibly_damaging(0.521) TCGA-EE-A3AG-06 12 124335607 124335607 G A DNAH10 Missense_Mutation p.G1974D 0.30 probably_damaging(1) TCGA-EE-A3AG-06 12 124393903 124393903 G A DNAH10 Missense_Mutation p.G3186D 0.26 probably_damaging(0.936) TCGA-EE-A3AG-06 12 130648351 130648351 C T FZD10 Silent p.I288I 0.56 TCGA-EE-A3AG-06 12 131487747 131487747 G A GPR133 Silent p.L348L 0.30 TCGA-EE-A3AG-06 12 132209997 132209997 C T SFSWAP Silent p.F218F 0.25 TCGA-EE-A3AG-06 12 132683748 132683748 G A GALNT9 Missense_Mutation p.L124F 0.16 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AG-06 12 133764608 133764608 C T ZNF268 Silent p.L62L 0.55 TCGA-EE-A3AG-06 12 13716388 13716388 C T GRIN2B Missense_Mutation p.E1262K 0.23 tolerated(0.12) benign(0.132) TCGA-EE-A3AG-06 12 13761666 13761666 G A GRIN2B Silent p.T627T 0.48 TCGA-EE-A3AG-06 12 14651095 14651095 C T ATF7IP 3'UTR 0.27 TCGA-EE-A3AG-06 12 14839148 14839148 C A GUCY2C Silent p.R114R 0.71 TCGA-EE-A3AG-06 12 18234351 18234351 C T RERGL Missense_Mutation p.R131Q 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 12 18891129 18891129 G A CAPZA3 5'UTR 0.33 TCGA-EE-A3AG-06 12 1988201 1988201 C T CACNA2D4 Missense_Mutation p.R522Q 0.12 tolerated(0.15) possibly_damaging(0.455) TCGA-EE-A3AG-06 12 2016677 2016677 T C CACNA2D4 Missense_Mutation p.N237S 0.19 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AG-06 12 20876032 20876032 C T SLCO1C1 Missense_Mutation p.P344S 0.47 deleterious(0.02) possibly_damaging(0.733) TCGA-EE-A3AG-06 12 21014014 21014014 C T SLCO1B3 Silent p.T141T 0.42 TCGA-EE-A3AG-06 12 21353449 21353449 C T SLCO1B1 Silent p.F326F 0.32 TCGA-EE-A3AG-06 12 2162765 2162765 G A CACNA1C Missense_Mutation p.E13K 0.42 deleterious_low_confidence(0.05) benign(0.156) TCGA-EE-A3AG-06 12 21965081 21965081 G A ABCC9 Silent p.V1371V 0.53 TCGA-EE-A3AG-06 12 22069894 22069894 C T ABCC9 Missense_Mutation p.E184K 0.43 deleterious(0) possibly_damaging(0.894) TCGA-EE-A3AG-06 12 27127114 27127114 A G TM7SF3 Silent p.I499I 0.48 TCGA-EE-A3AG-06 12 28412319 28412319 G A CCDC91 Missense_Mutation p.G18E 0.33 tolerated(0.17) benign(0.021) TCGA-EE-A3AG-06 12 305415 305415 C T SLC6A12 Missense_Mutation p.E401K 0.69 deleterious(0.01) possibly_damaging(0.746) TCGA-EE-A3AG-06 12 305416 305416 C T SLC6A12 Silent p.V400V 0.71 TCGA-EE-A3AG-06 12 308072 308072 G A SLC6A12 Missense_Mutation p.P246L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 12 32945632 32945632 G A PKP2 Silent p.S841S 0.47 TCGA-EE-A3AG-06 12 335680 335680 C T SLC6A13 Silent p.R312R 0.62 TCGA-EE-A3AG-06 12 41463829 41463829 G A CNTN1 Missense_Mutation p.E1017K 0.57 tolerated_low_confidence(0.41) benign(0.292) TCGA-EE-A3AG-06 12 43826135 43826135 G A ADAMTS20 Missense_Mutation p.P1023L 0.53 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AG-06 12 46246257 46246257 C T ARID2 Missense_Mutation p.P1451S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AG-06 12 47160477 47160477 C T SLC38A4 3'UTR 0.20 TCGA-EE-A3AG-06 12 48133942 48133942 G A RAPGEF3 Silent p.S785S 0.73 TCGA-EE-A3AG-06 12 48882737 48882737 G A C12orf54 Missense_Mutation p.E56K 0.39 deleterious(0) possibly_damaging(0.801) TCGA-EE-A3AG-06 12 49233800 49233800 G A DDX23 Missense_Mutation p.P137L 0.44 tolerated(0.1) unknown(0) TCGA-EE-A3AG-06 12 49258632 49258632 C T RND1 Missense_Mutation p.E48K 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3AG-06 12 49440416 49440416 G A KMT2D Missense_Mutation p.P1465L 0.49 probably_damaging(1) TCGA-EE-A3AG-06 12 49658921 49658921 C T TUBA1C 5'UTR 0.50 TCGA-EE-A3AG-06 12 50188918 50188918 C T NCKAP5L Missense_Mutation p.V909I 0.37 deleterious(0.02) benign(0.046) TCGA-EE-A3AG-06 12 50188919 50188919 C T NCKAP5L Silent p.E908E 0.36 TCGA-EE-A3AG-06 12 50295080 50295080 G A FAIM2 Missense_Mutation p.T15I 0.44 tolerated_low_confidence(0.09) benign(0.177) TCGA-EE-A3AG-06 12 51382183 51382183 G A SLC11A2 Silent p.F566F 0.45 TCGA-EE-A3AG-06 12 5155065 5155065 G A KCNA5 Silent p.E584E 0.50 TCGA-EE-A3AG-06 12 52174539 52174539 G A SCN8A Missense_Mutation p.R1309Q 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AG-06 12 52284611 52284611 C T ANKRD33 Missense_Mutation p.P294L 0.50 tolerated(0.08) possibly_damaging(0.818) TCGA-EE-A3AG-06 12 52448684 52448684 C T NR4A1 Missense_Mutation p.S204F 0.34 tolerated(0.06) probably_damaging(0.986) TCGA-EE-A3AG-06 12 52565271 52565271 G C KRT80 Missense_Mutation p.R424G 0.28 deleterious(0.03) benign(0.005) TCGA-EE-A3AG-06 12 52867508 52867508 G A KRT6C Missense_Mutation p.S5F 0.44 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AG-06 12 52963677 52963677 C T KRT74 Missense_Mutation p.R367K 0.27 deleterious(0.04) benign(0.246) TCGA-EE-A3AG-06 12 53038892 53038892 C T KRT2 Missense_Mutation p.G611R 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AG-06 12 53203182 53203182 C T KRT4 Silent p.K273K 0.26 TCGA-EE-A3AG-06 12 53456001 53456001 C T TENC1 Silent p.I1223I 0.63 TCGA-EE-A3AG-06 12 53594063 53594063 G A ITGB7 Silent p.I55I 0.14 TCGA-EE-A3AG-06 12 55252110 55252110 G A MUCL1 3'UTR 0.59 TCGA-EE-A3AG-06 12 55356658 55356658 C T TESPA1 Missense_Mutation p.E342K 0.58 tolerated_low_confidence(0.09) benign(0.014) TCGA-EE-A3AG-06 12 55615186 55615186 C T OR10A7 Silent p.I126I 0.30 TCGA-EE-A3AG-06 12 55794521 55794521 C T OR6C65 Missense_Mutation p.S70L 0.33 tolerated_low_confidence(0.08) benign(0.011) TCGA-EE-A3AG-06 12 56631453 56631453 G A SLC39A5 Missense_Mutation p.G521S 0.17 tolerated(0.89) probably_damaging(0.961) TCGA-EE-A3AG-06 12 56631454 56631454 G A SLC39A5 Missense_Mutation p.G521D 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3AG-06 12 56637082 56637082 G A ANKRD52 Silent p.D1025D 0.33 TCGA-EE-A3AG-06 12 56848172 56848172 G A MIP Missense_Mutation p.L76F 0.51 tolerated(0.11) probably_damaging(0.995) TCGA-EE-A3AG-06 12 56848285 56848285 G A MIP Missense_Mutation p.P38L 0.68 tolerated(1) possibly_damaging(0.648) TCGA-EE-A3AG-06 12 5685149 5685149 G A ANO2 Silent p.I824I 0.38 TCGA-EE-A3AG-06 12 56863217 56863217 G A SPRYD4 Silent p.Q160Q 0.55 TCGA-EE-A3AG-06 12 57588878 57588878 C T LRP1 Missense_Mutation p.H2768Y 0.58 benign(0.187) TCGA-EE-A3AG-06 12 57598218 57598218 C T LRP1 Silent p.F3659F 0.29 TCGA-EE-A3AG-06 12 57598914 57598914 C T LRP1 Silent p.T3739T 0.76 TCGA-EE-A3AG-06 12 57865042 57865042 G A GLI1 Missense_Mutation p.G840E 0.54 tolerated_low_confidence(0.13) benign(0.021) TCGA-EE-A3AG-06 12 58350598 58350598 C T XRCC6BP1 Silent p.I222I 0.35 TCGA-EE-A3AG-06 12 60165124 60165124 C T SLC16A7 Silent p.L114L 0.23 TCGA-EE-A3AG-06 12 60168705 60168705 A G SLC16A7 Missense_Mutation p.K210R 0.38 tolerated(0.21) benign(0.428) TCGA-EE-A3AG-06 12 63195772 63195772 C T PPM1H Missense_Mutation p.E194K 0.30 tolerated(0.48) benign(0.231) TCGA-EE-A3AG-06 12 6438691 6438691 G A TNFRSF1A Silent p.I385I 0.59 TCGA-EE-A3AG-06 12 64588126 64588126 G A C12orf66 Silent p.S278S 0.71 TCGA-EE-A3AG-06 12 6463683 6463683 C T SCNN1A Silent p.K486K 0.65 TCGA-EE-A3AG-06 12 6806591 6806591 C T PIANP Missense_Mutation p.D129N 0.30 tolerated_low_confidence(0.28) possibly_damaging(0.728) TCGA-EE-A3AG-06 12 69742288 69742288 G A LYZ Missense_Mutation p.G34R 0.21 deleterious(0.02) possibly_damaging(0.789) TCGA-EE-A3AG-06 12 69965954 69965954 G A FRS2 Missense_Mutation p.G157R 0.26 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3AG-06 12 71286618 71286618 G A PTPRR Silent p.Y66Y 0.28 TCGA-EE-A3AG-06 12 7528454 7528454 G C CD163L1 Missense_Mutation p.S843C 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 12 7586219 7586219 G A CD163L1 Nonsense_Mutation p.Q66* 0.28 TCGA-EE-A3AG-06 12 7632488 7632488 C T CD163 Missense_Mutation p.E1150K 0.58 deleterious(0.05) benign(0.187) TCGA-EE-A3AG-06 12 7639971 7639971 G A CD163 Silent p.A678A 0.41 TCGA-EE-A3AG-06 12 77191241 77191241 C T ZDHHC17 Missense_Mutation p.H41Y 0.62 deleterious(0.02) benign(0.069) TCGA-EE-A3AG-06 12 77423987 77423987 G A E2F7 Missense_Mutation p.S503F 0.38 tolerated(0.06) possibly_damaging(0.798) TCGA-EE-A3AG-06 12 7848199 7848199 C T GDF3 Silent p.Q42Q 0.33 TCGA-EE-A3AG-06 12 78573391 78573391 G A NAV3 Missense_Mutation p.D1794N 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 12 7867807 7867807 G A DPPA3 Silent p.L37L 0.55 TCGA-EE-A3AG-06 12 7882278 7882278 G A CLEC4C Missense_Mutation p.R186C 0.26 deleterious(0.02) possibly_damaging(0.616) TCGA-EE-A3AG-06 12 8023561 8023561 G A SLC2A14 5'UTR 0.30 TCGA-EE-A3AG-06 12 80717528 80717528 G A OTOGL Silent p.R1360R 0.53 TCGA-EE-A3AG-06 12 81472131 81472131 G A ACSS3 Missense_Mutation p.G78S 0.29 tolerated(0.22) benign(0.331) TCGA-EE-A3AG-06 12 8610512 8610512 C T CLEC6A Missense_Mutation p.S17F 0.66 tolerated(0.06) possibly_damaging(0.459) TCGA-EE-A3AG-06 12 91539904 91539904 C T DCN Nonsense_Mutation p.W337* 0.32 TCGA-EE-A3AG-06 12 9248273 9248273 C T A2M Silent p.K625K 0.30 TCGA-EE-A3AG-06 12 9349172 9349172 C T PZP Missense_Mutation p.G326E 0.55 tolerated(0.1) probably_damaging(0.915) TCGA-EE-A3AG-06 12 9353559 9353559 C T PZP Missense_Mutation p.G200D 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 12 95603750 95603750 G A FGD6 Missense_Mutation p.S437L 0.26 tolerated_low_confidence(0.4) benign(0.004) TCGA-EE-A3AG-06 12 95604944 95604944 G A FGD6 Missense_Mutation p.S39F 0.60 tolerated(0.05) possibly_damaging(0.794) TCGA-EE-A3AG-06 13 103295587 103295587 C T TPP2 Missense_Mutation p.S679L 0.31 deleterious(0) probably_damaging(0.988) TCGA-EE-A3AG-06 13 111082986 111082986 G A COL4A2 Intron 0.43 TCGA-EE-A3AG-06 13 111111224 111111224 G A COL4A2 Silent p.R513R 0.48 TCGA-EE-A3AG-06 13 111329397 111329397 G A CARS2 Missense_Mutation p.P237S 0.36 deleterious(0.04) possibly_damaging(0.524) TCGA-EE-A3AG-06 13 113030790 113030790 C T SPACA7 Missense_Mutation p.P31S 0.50 tolerated(1) benign(0.027) TCGA-EE-A3AG-06 13 113751011 113751011 G A MCF2L Intron 0.40 TCGA-EE-A3AG-06 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.54 tolerated(0.63) benign(0.006) TCGA-EE-A3AG-06 13 23908923 23908941 AGTAAATTGTCAAAAAATG - SACS Frame_Shift_Del p.P3025Hfs*21 0.29 TCGA-EE-A3AG-06 13 24874551 24874551 C T SPATA13 Missense_Mutation p.S1199L 0.39 deleterious(0) possibly_damaging(0.593) TCGA-EE-A3AG-06 13 25284612 25284612 G A ATP12A Silent p.R932R 0.12 TCGA-EE-A3AG-06 13 25338313 25338313 G A RNF17 5'UTR 0.62 TCGA-EE-A3AG-06 13 25362263 25362263 C T RNF17 Missense_Mutation p.S250L 0.33 deleterious(0.01) benign(0.005) TCGA-EE-A3AG-06 13 25370433 25370433 G A RNF17 Missense_Mutation p.G467S 0.64 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 13 25444865 25444865 G A RNF17 Missense_Mutation p.D1479N 0.38 tolerated(0.14) probably_damaging(0.989) TCGA-EE-A3AG-06 13 25479569 25479569 G A CENPJ Silent p.F869F 0.65 TCGA-EE-A3AG-06 13 25670872 25670872 G A PABPC3 Missense_Mutation p.R179Q 0.15 deleterious(0) probably_damaging(0.98) TCGA-EE-A3AG-06 13 28589333 28589333 C A FLT3 Missense_Mutation p.G905V 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 13 29287223 29287223 G A SLC46A3 Silent p.L218L 0.53 TCGA-EE-A3AG-06 13 29287225 29287225 G A SLC46A3 Missense_Mutation p.L218F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 13 29599316 29599316 G A MTUS2 Missense_Mutation p.D171N 0.29 tolerated(0.06) probably_damaging(0.935) TCGA-EE-A3AG-06 13 33016764 33016764 G A N4BP2L2 Missense_Mutation p.S637F 0.67 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 13 35619500 35619500 C T NBEA Missense_Mutation p.P229S 0.61 deleterious(0.03) possibly_damaging(0.616) TCGA-EE-A3AG-06 13 37014123 37014123 G A CCNA1 Missense_Mutation p.E301K 0.53 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A3AG-06 13 37016374 37016374 C T CCNA1 Missense_Mutation p.H427Y 0.68 tolerated(0.13) probably_damaging(1) TCGA-EE-A3AG-06 13 38237701 38237701 G A TRPC4 Silent p.L514L 0.70 TCGA-EE-A3AG-06 13 39918104 39918104 G A LHFP Missense_Mutation p.S191L 0.28 deleterious(0) benign(0.097) TCGA-EE-A3AG-06 13 43181040 43181040 C T TNFSF11 Nonsense_Mutation p.R314* 0.24 TCGA-EE-A3AG-06 13 50062521 50062521 C T SETDB2 Missense_Mutation p.P570S 0.37 tolerated(0.54) benign(0.052) TCGA-EE-A3AG-06 13 50502187 50502189 AAC TT SPRYD7 Frame_Shift_Del p.V86Kfs*3 0.23 TCGA-EE-A3AG-06 13 50589959 50589959 G A KCNRG Silent p.V110V 0.56 TCGA-EE-A3AG-06 13 61986455 61986455 C T PCDH20 Missense_Mutation p.V593I 0.61 deleterious(0.03) probably_damaging(0.95) TCGA-EE-A3AG-06 13 77581760 77581760 G A FBXL3 Silent p.F269F 0.50 TCGA-EE-A3AG-06 13 78218452 78218452 A T SCEL 3'UTR 0.27 TCGA-EE-A3AG-06 13 86368978 86368978 C T SLITRK6 Missense_Mutation p.E556K 0.55 deleterious(0.02) benign(0.008) TCGA-EE-A3AG-06 13 86369483 86369483 G A SLITRK6 Silent p.F387F 0.67 TCGA-EE-A3AG-06 13 96239907 96239907 G A DZIP1 Missense_Mutation p.P702S 0.34 tolerated(0.55) benign(0.055) TCGA-EE-A3AG-06 13 98658486 98658486 T A IPO5 Missense_Mutation p.F552I 0.48 deleterious(0.01) probably_damaging(0.97) TCGA-EE-A3AG-06 13 98829361 98829361 C T RNF113B Missense_Mutation p.G44R 0.28 tolerated(0.16) benign(0.013) TCGA-EE-A3AG-06 13 99907671 99907671 C T GPR18 Silent p.T152T 0.30 TCGA-EE-A3AG-06 14 101453423 101453423 G A SNORD114-26 RNA 0.30 TCGA-EE-A3AG-06 14 101531652 101531652 G A MIR409 RNA 0.29 TCGA-EE-A3AG-06 14 104570685 104570685 G A ASPG Silent p.E266E 0.64 TCGA-EE-A3AG-06 14 104643572 104643572 G A KIF26A Missense_Mutation p.G1483S 0.56 tolerated(1) benign(0) TCGA-EE-A3AG-06 14 105413991 105413991 C T AHNAK2 Silent p.K2599K 0.59 TCGA-EE-A3AG-06 14 105517962 105517962 C T GPR132 Missense_Mutation p.G171E 0.23 deleterious(0.02) possibly_damaging(0.821) TCGA-EE-A3AG-06 14 105615329 105615329 C T JAG2 Silent p.G617G 0.23 TCGA-EE-A3AG-06 14 106067917 106067917 C T IGHE Missense_Mutation p.G50E 0.21 tolerated(1) benign(0.009) TCGA-EE-A3AG-06 14 106322014 106322014 G A IGHM Missense_Mutation p.P104S 0.58 tolerated(0.1) benign(0.074) TCGA-EE-A3AG-06 14 106641620 106641620 G A IGHV1-18 Silent p.A98A 0.22 TCGA-EE-A3AG-06 14 106733218 106733218 T C IGHV1-24 Missense_Mutation p.T93A 0.52 tolerated(0.09) benign(0.158) TCGA-EE-A3AG-06 14 20388956 20388956 G A OR4K5 Missense_Mutation p.G64E 0.37 deleterious(0) possibly_damaging(0.77) TCGA-EE-A3AG-06 14 20502436 20502436 G A OR4K13 Missense_Mutation p.A161V 0.46 tolerated(0.89) benign(0.023) TCGA-EE-A3AG-06 14 20528335 20528335 C T OR4L1 Silent p.L44L 0.55 TCGA-EE-A3AG-06 14 20585689 20585689 G A OR4K17 Missense_Mutation p.E42K 0.34 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A3AG-06 14 22251480 22251480 G A TRAV7 Missense_Mutation p.G33R 0.48 tolerated(0.7) benign(0) TCGA-EE-A3AG-06 14 22386477 22386477 G A TRAV13-2 Silent p.L15L 0.59 TCGA-EE-A3AG-06 14 22539378 22539378 A G TRAV22 Missense_Mutation p.S80G 0.65 tolerated(0.19) benign(0.019) TCGA-EE-A3AG-06 14 22564750 22564750 C T TRDV1 Silent p.F67F 0.61 TCGA-EE-A3AG-06 14 23451387 23451387 G A AJUBA Missense_Mutation p.T30I 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.86) TCGA-EE-A3AG-06 14 23792248 23792248 T C PABPN1 Silent p.A169A 0.28 TCGA-EE-A3AG-06 14 23870134 23870134 C T MYH6 Silent p.K398K 0.31 TCGA-EE-A3AG-06 14 24545039 24545039 G A CPNE6 Missense_Mutation p.E290K 0.29 tolerated(0.41) benign(0.032) TCGA-EE-A3AG-06 14 24976608 24976608 G A CMA1 Missense_Mutation p.L55F 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 14 25102253 25102253 C T GZMB Missense_Mutation p.G24E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 14 26917793 26917793 G A NOVA1 Missense_Mutation p.A299V 0.50 deleterious(0.03) unknown(0) TCGA-EE-A3AG-06 14 31774117 31774117 G A RP11-596D21.1 3'Flank 0.25 TCGA-EE-A3AG-06 14 32562319 32562319 C T ARHGAP5 Missense_Mutation p.S815F 0.55 deleterious(0) possibly_damaging(0.724) TCGA-EE-A3AG-06 14 37051552 37051552 G A NKX2-8 Silent p.L15L 0.60 TCGA-EE-A3AG-06 14 39818153 39818153 C T CTAGE5 Silent p.F745F 0.24 TCGA-EE-A3AG-06 14 44975634 44975634 G A FSCB Missense_Mutation p.S186L 0.28 deleterious(0) probably_damaging(0.929) TCGA-EE-A3AG-06 14 45675348 45675348 G A MIS18BP1 Missense_Mutation p.R1060C 0.25 deleterious(0) possibly_damaging(0.749) TCGA-EE-A3AG-06 14 50912825 50912825 C G MAP4K5 Missense_Mutation p.R386P 0.37 tolerated(0.33) benign(0.002) TCGA-EE-A3AG-06 14 53521309 53521309 A G DDHD1 Missense_Mutation p.F762L 0.59 tolerated(0.13) possibly_damaging(0.808) TCGA-EE-A3AG-06 14 55251268 55251268 C T SAMD4A Silent p.P686P 0.33 TCGA-EE-A3AG-06 14 55819194 55819194 C T FBXO34 Missense_Mutation p.R696W 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 14 55902610 55902610 C T TBPL2 Silent p.L217L 0.29 TCGA-EE-A3AG-06 14 58060803 58060803 G T SLC35F4 Missense_Mutation p.A84D 0.54 tolerated_low_confidence(0.1) benign(0.036) TCGA-EE-A3AG-06 14 59970802 59970802 T G JKAMP 3'UTR 0.27 TCGA-EE-A3AG-06 14 61113243 61113243 G A SIX1 Missense_Mutation p.P205S 0.62 tolerated(0.16) benign(0.011) TCGA-EE-A3AG-06 14 61180337 61180337 G A SIX4 Missense_Mutation p.R712C 0.31 deleterious_low_confidence(0) benign(0.306) TCGA-EE-A3AG-06 14 64898303 64898303 C T MTHFD1 Silent p.L455L 0.58 TCGA-EE-A3AG-06 14 65233428 65233428 G A SPTB Intron 0.23 TCGA-EE-A3AG-06 14 70634988 70634988 G A SLC8A3 Missense_Mutation p.S51L 0.63 tolerated(0.15) benign(0.003) TCGA-EE-A3AG-06 14 70991640 70991640 G A ADAM20 5'UTR 0.33 TCGA-EE-A3AG-06 14 71267682 71267682 G A MAP3K9 Silent p.R174R 0.27 TCGA-EE-A3AG-06 14 71435813 71435813 G A PCNX Missense_Mutation p.G197E 0.53 deleterious(0.04) possibly_damaging(0.735) TCGA-EE-A3AG-06 14 71575703 71575703 C T PCNX Silent p.N2228N 0.29 TCGA-EE-A3AG-06 14 75329637 75329637 C T PROX2 Intron 0.58 TCGA-EE-A3AG-06 14 75376333 75376333 C T RPS6KL1 Missense_Mutation p.E395K 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 14 81743428 81743428 G A STON2 Missense_Mutation p.R743C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 14 88477762 88477762 G A GPR65 Missense_Mutation p.G191S 0.55 deleterious(0.03) possibly_damaging(0.754) TCGA-EE-A3AG-06 14 89181355 89181355 C T EML5 Missense_Mutation p.D458N 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 14 91647628 91647628 C T C14orf159 Missense_Mutation p.P277S 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A3AG-06 14 91755607 91755607 G A CCDC88C Missense_Mutation p.S1428F 0.21 deleterious(0) possibly_damaging(0.729) TCGA-EE-A3AG-06 14 91780260 91780260 C T CCDC88C Missense_Mutation p.E634K 0.72 deleterious(0) possibly_damaging(0.529) TCGA-EE-A3AG-06 14 94152932 94152932 G A UNC79 Silent p.A2140A 0.30 TCGA-EE-A3AG-06 14 94712823 94712823 G A PPP4R4 Missense_Mutation p.D520N 0.60 deleterious(0) probably_damaging(0.984) TCGA-EE-A3AG-06 14 94722887 94722887 G A PPP4R4 Silent p.V652V 0.51 TCGA-EE-A3AG-06 14 95030123 95030123 C T SERPINA4 Missense_Mutation p.L102F 0.28 tolerated(0.07) possibly_damaging(0.615) TCGA-EE-A3AG-06 14 95030225 95030225 G A SERPINA4 Missense_Mutation p.E136K 0.54 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A3AG-06 14 95033498 95033498 C T SERPINA4 Missense_Mutation p.P281S 0.40 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 14 95053780 95053780 G A SERPINA5 Missense_Mutation p.M27I 0.33 tolerated(0.19) benign(0.005) TCGA-EE-A3AG-06 14 95081243 95081243 G A SERPINA3 Silent p.E155E 0.50 TCGA-EE-A3AG-06 14 96129845 96129846 CC T TCL6 RNA 0.30 TCGA-EE-A3AG-06 14 99183513 99183513 C T C14orf177 Missense_Mutation p.H94Y 0.56 deleterious_low_confidence(0) benign(0.291) TCGA-EE-A3AG-06 14 99641447 99641447 C T BCL11B Missense_Mutation p.V576I 0.35 tolerated(0.42) benign(0.034) TCGA-EE-A3AG-06 14 99723935 99723935 G A BCL11B Silent p.P100P 0.19 TCGA-EE-A3AG-06 15 101113849 101113849 G A LINS Intron 0.32 TCGA-EE-A3AG-06 15 20876510 20876510 A G NBEAP1 RNA 0.09 TCGA-EE-A3AG-06 15 21051221 21051221 C T POTEB2 Silent p.R413R 0.18 TCGA-EE-A3AG-06 15 21071256 21071256 C T POTEB2 Missense_Mutation p.D119N 0.16 tolerated(0.07) possibly_damaging(0.827) TCGA-EE-A3AG-06 15 22382645 22382645 C T OR4N4 Missense_Mutation p.P58L 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 15 22945107 22945107 T A CYFIP1 Missense_Mutation p.L393Q 0.48 deleterious(0) possibly_damaging(0.877) TCGA-EE-A3AG-06 15 22999452 22999452 C T CYFIP1 Silent p.I1108I 0.37 TCGA-EE-A3AG-06 15 23299951 23299951 G A HERC2P2 RNA 0.54 TCGA-EE-A3AG-06 15 24923694 24923694 G A NPAP1 Missense_Mutation p.G894R 0.49 tolerated(0.13) benign(0.026) TCGA-EE-A3AG-06 15 25444446 25444446 G A SNORD115-14 3'Flank 0.32 TCGA-EE-A3AG-06 15 25451265 25451265 G A SNORD115-22 5'Flank 0.65 TCGA-EE-A3AG-06 15 26026240 26026240 G A ATP10A Missense_Mutation p.H194Y 0.36 tolerated(0.19) possibly_damaging(0.679) TCGA-EE-A3AG-06 15 27572008 27572008 G A GABRG3 Missense_Mutation p.R108Q 0.48 deleterious(0.03) possibly_damaging(0.687) TCGA-EE-A3AG-06 15 28903845 28903845 C T HERC2P9 RNA 0.50 TCGA-EE-A3AG-06 15 28903876 28903876 C T HERC2P9 RNA 0.38 TCGA-EE-A3AG-06 15 31776795 31776795 C T OTUD7A Missense_Mutation p.D495N 0.52 tolerated(0.22) benign(0.204) TCGA-EE-A3AG-06 15 34130518 34130518 G A RYR3 Missense_Mutation p.E4113K 0.53 benign(0.12) TCGA-EE-A3AG-06 15 34159738 34159738 G A AVEN Silent p.L311L 0.38 TCGA-EE-A3AG-06 15 34159739 34159739 G A AVEN Silent p.D310D 0.38 TCGA-EE-A3AG-06 15 34356068 34356068 G A CHRM5 Missense_Mutation p.V384M 0.47 tolerated(0.13) benign(0.17) TCGA-EE-A3AG-06 15 34640841 34640841 C T NUTM1 Nonsense_Mutation p.Q230* 0.45 TCGA-EE-A3AG-06 15 34647955 34647955 G A NUTM1 Silent p.G554G 0.40 TCGA-EE-A3AG-06 15 34649428 34649428 T C NUTM1 Silent p.G1045G 0.15 TCGA-EE-A3AG-06 15 34651861 34651861 G A LPCAT4 Missense_Mutation p.S443L 0.38 tolerated(0.28) benign(0.009) TCGA-EE-A3AG-06 15 35202380 35202380 G A AQR Missense_Mutation p.T540I 0.43 deleterious(0.02) benign(0.337) TCGA-EE-A3AG-06 15 39893003 39893003 G A FSIP1 3'UTR 0.37 TCGA-EE-A3AG-06 15 40259920 40259920 C T EIF2AK4 Missense_Mutation p.R465C 0.44 deleterious(0) probably_damaging(0.957) TCGA-EE-A3AG-06 15 40865983 40865983 C T RPUSD2 Silent p.P387P 0.45 TCGA-EE-A3AG-06 15 40902456 40902456 G A CASC5 Missense_Mutation p.E71K 0.42 tolerated(0.09) probably_damaging(0.914) TCGA-EE-A3AG-06 15 41224579 41224579 G A DLL4 Missense_Mutation p.G262S 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 15 41224580 41224580 G A DLL4 Missense_Mutation p.G262D 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 15 41229658 41229658 G A DLL4 Silent p.R662R 0.52 TCGA-EE-A3AG-06 15 41750008 41750008 T G RTF1 Missense_Mutation p.M199R 0.40 deleterious(0) possibly_damaging(0.824) TCGA-EE-A3AG-06 15 42434766 42434766 G A PLA2G4F Silent p.F763F 0.45 TCGA-EE-A3AG-06 15 42566701 42566701 G A GANC Missense_Mutation p.E8K 0.52 benign(0.002) TCGA-EE-A3AG-06 15 43620539 43620539 G A LCMT2 3'UTR 0.33 TCGA-EE-A3AG-06 15 43773106 43773106 G A TP53BP1 Silent p.S162S 0.53 TCGA-EE-A3AG-06 15 44092774 44092774 G A HYPK 5'UTR 0.41 TCGA-EE-A3AG-06 15 44865754 44865754 G A SPG11 Nonsense_Mutation p.Q2066* 0.48 TCGA-EE-A3AG-06 15 45393430 45393430 G A DUOX2 Missense_Mutation p.S965L 0.32 deleterious(0.02) benign(0.006) TCGA-EE-A3AG-06 15 45410015 45410015 C T DUOXA2 Nonsense_Mutation p.Q291* 0.40 TCGA-EE-A3AG-06 15 45559976 45559976 G A SLC28A2 Missense_Mutation p.G394E 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AG-06 15 45657033 45657033 C T GATM Nonsense_Mutation p.W335* 0.42 TCGA-EE-A3AG-06 15 48500135 48500135 C T SLC12A1 Silent p.F73F 0.49 TCGA-EE-A3AG-06 15 51012216 51012216 G A SPPL2A Missense_Mutation p.P470L 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 15 51514528 51514528 G A CYP19A1 Intron 0.50 TCGA-EE-A3AG-06 15 51697017 51697017 G A GLDN 3'UTR 0.47 TCGA-EE-A3AG-06 15 55664196 55664196 G A CCPG1 Silent p.T167T 0.35 TCGA-EE-A3AG-06 15 57730875 57730875 C T CGNL1 Silent p.D226D 0.27 TCGA-EE-A3AG-06 15 58936118 58936118 G A ADAM10 Silent p.I265I 0.25 TCGA-EE-A3AG-06 15 59964889 59964889 G A BNIP2 Silent p.F295F 0.40 TCGA-EE-A3AG-06 15 60806938 60806938 G A RORA Nonsense_Mutation p.Q134* 0.57 TCGA-EE-A3AG-06 15 64046743 64046743 C T HERC1 Missense_Mutation p.D579N 0.42 probably_damaging(0.997) TCGA-EE-A3AG-06 15 65208001 65208001 C T ANKDD1A Missense_Mutation p.P14S 0.50 tolerated(0.08) probably_damaging(0.936) TCGA-EE-A3AG-06 15 65622704 65622704 G A IGDCC3 Silent p.L595L 0.33 TCGA-EE-A3AG-06 15 66727569 66727569 C T MAP2K1 Silent p.A95A 0.63 TCGA-EE-A3AG-06 15 69695940 69695940 C T PAQR5 Missense_Mutation p.H258Y 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 15 70959686 70959686 G A UACA Missense_Mutation p.P1113S 0.33 tolerated(0.37) benign(0.028) TCGA-EE-A3AG-06 15 71256254 71256254 G C LRRC49 Missense_Mutation p.D307H 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 15 71403623 71403623 C T CT62 Missense_Mutation p.R93Q 0.42 tolerated_low_confidence(0.38) unknown(0) TCGA-EE-A3AG-06 15 71433860 71433860 C T THSD4 5'UTR 0.57 TCGA-EE-A3AG-06 15 72643516 72643516 G A HEXA Silent p.S210S 0.43 TCGA-EE-A3AG-06 15 73996076 73996076 C T CD276 Silent p.F270F 0.69 TCGA-EE-A3AG-06 15 74032412 74032412 G A C15orf59 Missense_Mutation p.S243F 0.44 tolerated(0.11) possibly_damaging(0.794) TCGA-EE-A3AG-06 15 75114199 75114199 C T LMAN1L Silent p.S363S 0.51 TCGA-EE-A3AG-06 15 75500392 75500392 C A C15orf39 Missense_Mutation p.P668Q 0.30 tolerated(0.07) benign(0.001) TCGA-EE-A3AG-06 15 75648741 75648741 G A MAN2C1 Silent p.F946F 0.30 TCGA-EE-A3AG-06 15 75692436 75692436 G A SIN3A Missense_Mutation p.S600F 0.61 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 15 78475076 78475076 G A ACSBG1 Missense_Mutation p.P239S 0.50 tolerated(0.52) benign(0.035) TCGA-EE-A3AG-06 15 79064033 79064033 C T ADAMTS7 Nonsense_Mutation p.W757* 0.37 TCGA-EE-A3AG-06 15 81637258 81637258 G A TMC3 Missense_Mutation p.S456F 0.45 deleterious(0.02) benign(0.025) TCGA-EE-A3AG-06 15 82444611 82444611 G A EFTUD1 Silent p.I728I 0.31 TCGA-EE-A3AG-06 15 83334244 83334244 C T AP3B2 Missense_Mutation p.E646K 0.29 deleterious(0.02) benign(0.07) TCGA-EE-A3AG-06 15 83434727 83434727 C T FSD2 Missense_Mutation p.S537N 0.67 tolerated(0.64) benign(0.005) TCGA-EE-A3AG-06 15 85326229 85326229 G A ZNF592 Missense_Mutation p.G108E 0.53 tolerated(0.07) probably_damaging(1) TCGA-EE-A3AG-06 15 85402590 85402590 G A ALPK3 Missense_Mutation p.D1514N 0.56 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AG-06 15 85411371 85411371 C T ALPK3 Missense_Mutation p.P1803L 0.22 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AG-06 15 86807643 86807643 C T AGBL1 Missense_Mutation p.S368F 0.50 deleterious(0.03) possibly_damaging(0.885) TCGA-EE-A3AG-06 15 87217540 87217540 G A AGBL1 Missense_Mutation p.G986R 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 15 88522570 88522570 G A NTRK3 Intron 0.65 TCGA-EE-A3AG-06 15 88799275 88799275 A G NTRK3 Missense_Mutation p.V37A 0.10 tolerated(0.69) benign(0.001) TCGA-EE-A3AG-06 15 91486206 91486206 C T UNC45A Silent p.V307V 0.51 TCGA-EE-A3AG-06 15 92706137 92706137 C T SLCO3A1 Silent p.S635S 0.63 TCGA-EE-A3AG-06 15 93588369 93588369 G A RGMA Silent p.L412L 0.53 TCGA-EE-A3AG-06 15 98512549 98512549 C T ARRDC4 Silent p.I274I 0.60 TCGA-EE-A3AG-06 16 1035151 1035151 C T SOX8 Missense_Mutation p.P369L 0.69 deleterious(0.05) benign(0.124) TCGA-EE-A3AG-06 16 1245497 1245497 G A CACNA1H Silent p.G159G 0.40 TCGA-EE-A3AG-06 16 1262084 1262084 G A CACNA1H Missense_Mutation p.E1569K 0.33 deleterious(0.04) probably_damaging(0.991) TCGA-EE-A3AG-06 16 14334138 14334138 G A MKL2 Silent p.K292K 0.71 TCGA-EE-A3AG-06 16 1453339 1453339 G A UNKL Silent p.P98P 0.33 TCGA-EE-A3AG-06 16 15702213 15702213 G A KIAA0430 Missense_Mutation p.R1373C 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3AG-06 16 15815296 15815296 C T MYH11 Missense_Mutation p.D1528N 0.56 probably_damaging(1) TCGA-EE-A3AG-06 16 16284023 16284023 G A ABCC6 Silent p.L545L 0.38 TCGA-EE-A3AG-06 16 16284205 16284205 T A ABCC6 Missense_Mutation p.K484M 0.27 tolerated(0.06) probably_damaging(0.991) TCGA-EE-A3AG-06 16 16315466 16315466 G A ABCC6 Intron 0.57 TCGA-EE-A3AG-06 16 1818312 1818312 C T MAPK8IP3 Silent p.S1224S 0.31 TCGA-EE-A3AG-06 16 19451763 19451763 C T TMC5 Missense_Mutation p.P135S 0.61 tolerated_low_confidence(0.19) benign(0.04) TCGA-EE-A3AG-06 16 19883558 19883558 G A GPRC5B Missense_Mutation p.L204F 0.27 deleterious(0.01) probably_damaging(0.966) TCGA-EE-A3AG-06 16 20043243 20043243 G A GPR139 Silent p.F292F 0.54 TCGA-EE-A3AG-06 16 20355393 20355393 G A UMOD Silent p.P428P 0.35 TCGA-EE-A3AG-06 16 20355394 20355394 G A UMOD Missense_Mutation p.P428L 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 16 20439149 20439149 C T ACSM5 Missense_Mutation p.P321S 0.58 deleterious(0.03) possibly_damaging(0.451) TCGA-EE-A3AG-06 16 20439153 20439153 C T ACSM5 Missense_Mutation p.T322I 0.33 tolerated(0.08) benign(0.367) TCGA-EE-A3AG-06 16 20548624 20548624 G A ACSM2B Nonsense_Mutation p.R564* 0.55 TCGA-EE-A3AG-06 16 21008666 21008666 G A DNAH3 Silent p.I2180I 0.26 TCGA-EE-A3AG-06 16 2225900 2225900 C T TRAF7 Silent p.S564S 0.66 TCGA-EE-A3AG-06 16 23197754 23197754 C T SCNN1G Silent p.L54L 0.30 TCGA-EE-A3AG-06 16 2331154 2331154 G A ABCA3 Silent p.C1411C 0.27 TCGA-EE-A3AG-06 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.18 TCGA-EE-A3AG-06 16 24803029 24803029 G A TNRC6A Nonsense_Mutation p.W1022* 0.35 TCGA-EE-A3AG-06 16 24942241 24942241 G A ARHGAP17 Silent p.T793T 0.32 TCGA-EE-A3AG-06 16 27374181 27374181 C T IL4R Missense_Mutation p.S503F 0.64 tolerated(0.52) benign(0.002) TCGA-EE-A3AG-06 16 27460449 27460449 G A IL21R Missense_Mutation p.D488N 0.27 deleterious(0.02) possibly_damaging(0.84) TCGA-EE-A3AG-06 16 27549248 27549248 C T GTF3C1 Silent p.K203K 0.59 TCGA-EE-A3AG-06 16 28618163 28618163 G A SULT1A1 Silent p.S171S 0.23 TCGA-EE-A3AG-06 16 2881806 2881806 G A ZG16B Silent p.V91V 0.50 TCGA-EE-A3AG-06 16 28914725 28914725 G A ATP2A1 Missense_Mutation p.E982K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 16 28925884 28925884 G A RABEP2 Silent p.S189S 0.55 TCGA-EE-A3AG-06 16 29675227 29675227 G A SPN Missense_Mutation p.D60N 0.63 tolerated(0.47) possibly_damaging(0.908) TCGA-EE-A3AG-06 16 29675345 29675345 C T SPN Missense_Mutation p.S99F 0.69 deleterious(0) probably_damaging(0.919) TCGA-EE-A3AG-06 16 29907160 29907160 G A SEZ6L2 Missense_Mutation p.S178F 0.60 deleterious(0.02) benign(0.275) TCGA-EE-A3AG-06 16 29908237 29908237 G A SEZ6L2 Silent p.S139S 0.20 TCGA-EE-A3AG-06 16 30106062 30106062 G A YPEL3 Intron 0.70 TCGA-EE-A3AG-06 16 30106063 30106063 G A YPEL3 Intron 0.70 TCGA-EE-A3AG-06 16 3023012 3023012 G A PKMYT1 Missense_Mutation p.P481L 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A3AG-06 16 304607 304607 C T ITFG3 Silent p.V65V 0.60 TCGA-EE-A3AG-06 16 30594027 30594027 G A ZNF785 Missense_Mutation p.H358Y 0.67 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AG-06 16 30594028 30594028 G A ZNF785 Silent p.A357A 0.67 TCGA-EE-A3AG-06 16 31004166 31004166 G A STX1B Silent p.S281S 0.27 TCGA-EE-A3AG-06 16 31157262 31157262 G A PRSS36 Missense_Mutation p.P190S 0.64 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A3AG-06 16 31234160 31234160 C T TRIM72 Silent p.I251I 0.11 TCGA-EE-A3AG-06 16 31392265 31392265 C T ITGAX Silent p.L1108L 0.48 TCGA-EE-A3AG-06 16 3141587 3141587 G T ZSCAN10 Silent p.T192T 0.57 TCGA-EE-A3AG-06 16 31484848 31484848 C T TGFB1I1 Missense_Mutation p.P34S 0.37 tolerated(0.76) benign(0.003) TCGA-EE-A3AG-06 16 3304424 3304424 C T MEFV Missense_Mutation p.G215E 0.62 tolerated(0.24) benign(0.105) TCGA-EE-A3AG-06 16 3306624 3306624 C T MEFV 5'UTR 0.35 TCGA-EE-A3AG-06 16 3339984 3339984 C T ZNF263 Missense_Mutation p.P493L 0.19 tolerated(0.34) possibly_damaging(0.701) TCGA-EE-A3AG-06 16 336925 336925 G A PDIA2 Missense_Mutation p.E505K 0.63 tolerated(0.43) benign(0) TCGA-EE-A3AG-06 16 3486990 3486990 C T ZNF597 Missense_Mutation p.E237K 0.26 tolerated(0.13) benign(0.024) TCGA-EE-A3AG-06 16 3486991 3486991 C T ZNF597 Silent p.K236K 0.27 TCGA-EE-A3AG-06 16 3613900 3613900 C T NLRC3 Silent p.R393R 0.71 TCGA-EE-A3AG-06 16 4411374 4411374 G A CORO7 Missense_Mutation p.R559C 0.24 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AG-06 16 46781861 46781861 G A MYLK3 Missense_Mutation p.P82L 0.26 tolerated(0.3) benign(0.006) TCGA-EE-A3AG-06 16 4910869 4910869 C T UBN1 Silent p.L292L 0.62 TCGA-EE-A3AG-06 16 49671869 49671869 C T ZNF423 Silent p.R398R 0.22 TCGA-EE-A3AG-06 16 50745127 50745127 G A NOD2 Silent p.R435R 0.64 TCGA-EE-A3AG-06 16 50753891 50753891 C T NOD2 Nonsense_Mutation p.R896* 0.61 TCGA-EE-A3AG-06 16 52497888 52497888 G A TOX3 Silent p.L122L 0.55 TCGA-EE-A3AG-06 16 53352166 53352166 C T CHD9 Missense_Mutation p.R2527C 0.36 unknown(0) TCGA-EE-A3AG-06 16 53404789 53404789 C T RP11-44F14.1 RNA 0.20 TCGA-EE-A3AG-06 16 53639377 53639377 A G RPGRIP1L Intron 0.29 TCGA-EE-A3AG-06 16 57088686 57088686 C T NLRC5 Missense_Mutation p.P1177L 0.55 tolerated(0.15) benign(0.02) TCGA-EE-A3AG-06 16 57596024 57596024 C T GPR114 Missense_Mutation p.L7F 0.25 tolerated(0.22) benign(0.002) TCGA-EE-A3AG-06 16 57918023 57918023 G A CNGB1 3'UTR 0.71 TCGA-EE-A3AG-06 16 58287928 58287928 C T CCDC113 Silent p.S85S 0.51 TCGA-EE-A3AG-06 16 61854962 61854962 C T CDH8 Silent p.R297R 0.52 TCGA-EE-A3AG-06 16 66885423 66885423 G A CA7 Missense_Mutation p.A139T 0.66 tolerated(0.13) probably_damaging(0.995) TCGA-EE-A3AG-06 16 67043060 67043060 G A CES4A 3'UTR 0.49 TCGA-EE-A3AG-06 16 68014061 68014061 G A DPEP3 Missense_Mutation p.P100S 0.16 tolerated(0.13) benign(0.007) TCGA-EE-A3AG-06 16 68934380 68934380 C T TANGO6 Missense_Mutation p.S474F 0.67 deleterious(0) possibly_damaging(0.482) TCGA-EE-A3AG-06 16 69373480 69373480 C T NIP7 5'UTR 0.67 TCGA-EE-A3AG-06 16 70588473 70588473 C T SF3B3 Silent p.S509S 0.59 TCGA-EE-A3AG-06 16 70954914 70954914 C T HYDIN Silent p.P2455P 0.20 TCGA-EE-A3AG-06 16 71604251 71604251 G A TAT Missense_Mutation p.T321I 0.63 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 16 72170436 72170436 C T PMFBP1 Missense_Mutation p.D372N 0.66 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3AG-06 16 72184532 72184532 C T PMFBP1 Missense_Mutation p.G204E 0.30 tolerated(0.45) possibly_damaging(0.465) TCGA-EE-A3AG-06 16 72827203 72827203 G A ZFHX3 Silent p.L3126L 0.27 TCGA-EE-A3AG-06 16 72828002 72828002 C T ZFHX3 Missense_Mutation p.G2860E 0.28 unknown(0) TCGA-EE-A3AG-06 16 72829102 72829102 G A ZFHX3 Silent p.P2493P 0.64 TCGA-EE-A3AG-06 16 76481971 76481971 C T CNTNAP4 Silent p.L176L 0.64 TCGA-EE-A3AG-06 16 76486500 76486500 G A CNTNAP4 Silent p.E316E 0.16 TCGA-EE-A3AG-06 16 80718715 80718715 G A CDYL2 Silent p.P112P 0.30 TCGA-EE-A3AG-06 16 84203607 84203607 G A DNAAF1 Silent p.P391P 0.56 TCGA-EE-A3AG-06 16 84456106 84456106 C T ATP2C2 Silent p.I245I 0.65 TCGA-EE-A3AG-06 16 846795 846795 C T CHTF18 Silent p.A845A 0.40 TCGA-EE-A3AG-06 16 84695403 84695403 C T KLHL36 Silent p.I505I 0.22 TCGA-EE-A3AG-06 16 85010782 85010782 C A ZDHHC7 Silent p.L260L 0.35 TCGA-EE-A3AG-06 16 85936699 85936699 G A IRF8 Silent p.L26L 0.62 TCGA-EE-A3AG-06 16 87677874 87677874 G A JPH3 Silent p.Q131Q 0.65 TCGA-EE-A3AG-06 16 87678642 87678642 G A JPH3 Splice_Site p.X387_splice 0.60 TCGA-EE-A3AG-06 16 87788820 87788820 G A KLHDC4 Missense_Mutation p.P117S 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AG-06 16 88688784 88688784 C T ZC3H18 Missense_Mutation p.S552F 0.44 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3AG-06 16 88723906 88723906 G A MVD Missense_Mutation p.S114L 0.30 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 16 89345505 89345505 G A ANKRD11 Missense_Mutation p.P2482L 0.14 possibly_damaging(0.887) TCGA-EE-A3AG-06 16 9857546 9857546 C T GRIN2A Silent p.R1285R 0.28 TCGA-EE-A3AG-06 16 9916154 9916154 C T GRIN2A Missense_Mutation p.G712E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 10408556 10408556 G A MYH1 Nonsense_Mutation p.Q787* 0.94 TCGA-EE-A3AG-06 17 10551946 10551946 G A MYH3 Silent p.I221I 0.95 TCGA-EE-A3AG-06 17 12823137 12823137 C T ARHGAP44 Silent p.S151S 1.00 TCGA-EE-A3AG-06 17 1548500 1548500 C T SCARF1 Nonsense_Mutation p.W45* 0.97 TCGA-EE-A3AG-06 17 1551726 1551726 C T RILP Missense_Mutation p.E247K 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 16062165 16062165 G A NCOR1 Missense_Mutation p.A214V 0.82 probably_damaging(0.995) TCGA-EE-A3AG-06 17 16593811 16593811 G A CCDC144A Missense_Mutation p.G33R 0.87 deleterious_low_confidence(0.03) benign(0.026) TCGA-EE-A3AG-06 17 1747224 1747224 C T RPA1 Missense_Mutation p.P32L 0.95 tolerated(0.08) benign(0.27) TCGA-EE-A3AG-06 17 18023906 18023906 G A MYO15A Missense_Mutation p.G598S 0.77 possibly_damaging(0.855) TCGA-EE-A3AG-06 17 19680995 19680995 T G ULK2 Missense_Mutation p.Q984P 0.76 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3AG-06 17 21731254 21731254 G A UBBP4 Intron 0.81 TCGA-EE-A3AG-06 17 25970563 25970563 G A LGALS9 Missense_Mutation p.V153I 0.88 tolerated(0.43) benign(0.065) TCGA-EE-A3AG-06 17 26687798 26687798 C T TMEM199 Silent p.F153F 0.90 TCGA-EE-A3AG-06 17 27015132 27015132 G A SUPT6H Silent p.R1010R 0.94 TCGA-EE-A3AG-06 17 2901655 2901655 G A RAP1GAP2 Silent p.E395E 0.93 TCGA-EE-A3AG-06 17 3424292 3424292 G A TRPV3 Silent p.I595I 0.96 TCGA-EE-A3AG-06 17 3477212 3477212 G A SHPK Silent p.S606S 0.98 TCGA-EE-A3AG-06 17 35896078 35896078 T A SYNRG Intron 0.87 TCGA-EE-A3AG-06 17 37234198 37234198 G A PLXDC1 Missense_Mutation p.S385F 0.91 deleterious(0.01) possibly_damaging(0.723) TCGA-EE-A3AG-06 17 38421226 38421226 T C WIPF2 Silent p.S266S 0.91 TCGA-EE-A3AG-06 17 3853997 3853997 G A ATP2A3 Silent p.S178S 0.15 TCGA-EE-A3AG-06 17 38652406 38652406 G A TNS4 Missense_Mutation p.P91L 0.86 tolerated(0.31) benign(0.001) TCGA-EE-A3AG-06 17 38652407 38652407 G T TNS4 Missense_Mutation p.P91T 0.86 tolerated(0.24) benign(0.004) TCGA-EE-A3AG-06 17 38936698 38936698 C T KRT27 Missense_Mutation p.E180K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 17 38975396 38975396 C A KRT10 Missense_Mutation p.R464L 0.54 tolerated(0.27) unknown(0) TCGA-EE-A3AG-06 17 39768789 39768789 G A KRT16 Missense_Mutation p.S51F 0.80 tolerated(0.18) unknown(0) TCGA-EE-A3AG-06 17 39911955 39911955 G A JUP 3'UTR 0.18 TCGA-EE-A3AG-06 17 40180127 40180127 G A ZNF385C Missense_Mutation p.P370S 0.95 deleterious(0.03) benign(0.077) TCGA-EE-A3AG-06 17 40370323 40370323 G A STAT5B Missense_Mutation p.P339S 0.18 deleterious(0.04) benign(0.099) TCGA-EE-A3AG-06 17 41246107 41246107 G A BRCA1 Silent p.L481L 0.28 TCGA-EE-A3AG-06 17 41365860 41365860 G A TMEM106A Silent p.Q75Q 0.26 TCGA-EE-A3AG-06 17 41584910 41584915 GAAACA - DHX8 In_Frame_Del p.E655_T656del 0.57 TCGA-EE-A3AG-06 17 42018914 42018914 G A PPY Missense_Mutation p.P37S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 42636136 42636136 G A FZD2 Nonsense_Mutation p.W360* 0.59 TCGA-EE-A3AG-06 17 42962668 42962668 G A EFTUD2 Silent p.F102F 0.30 TCGA-EE-A3AG-06 17 43003827 43003827 G A KIF18B Missense_Mutation p.P803S 0.69 deleterious(0.04) benign(0.187) TCGA-EE-A3AG-06 17 44144014 44144014 G A KANSL1 Silent p.L579L 0.36 TCGA-EE-A3AG-06 17 44845943 44845943 C T WNT3 Missense_Mutation p.E271K 0.23 tolerated(0.5) benign(0.023) TCGA-EE-A3AG-06 17 44845944 44845944 C T WNT3 Silent p.T270T 0.23 TCGA-EE-A3AG-06 17 45909257 45909257 C T LRRC46 5'UTR 0.57 TCGA-EE-A3AG-06 17 46057967 46057967 C T CDK5RAP3 Silent p.I362I 0.27 TCGA-EE-A3AG-06 17 46690746 46690746 C T HOXB8 Missense_Mutation p.G184R 0.32 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A3AG-06 17 46691711 46691711 C T HOXB8 Missense_Mutation p.G119D 0.27 tolerated(0.14) benign(0.23) TCGA-EE-A3AG-06 17 4711584 4711584 C T PLD2 Silent p.L86L 0.11 TCGA-EE-A3AG-06 17 4789758 4789758 C T MINK1 Silent p.F262F 0.96 TCGA-EE-A3AG-06 17 48244740 48244740 G A SGCA Missense_Mutation p.G17R 0.42 tolerated(0.49) benign(0.008) TCGA-EE-A3AG-06 17 48245361 48245361 G A SGCA Silent p.L122L 0.60 TCGA-EE-A3AG-06 17 48562205 48562205 C T RSAD1 Missense_Mutation p.P438S 0.55 tolerated_low_confidence(0.17) benign(0.002) TCGA-EE-A3AG-06 17 4863768 4863768 G A SPAG7 Silent p.I76I 0.95 TCGA-EE-A3AG-06 17 48668851 48668851 C T CACNA1G Missense_Mutation p.R837C 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 48703397 48703397 C T CACNA1G Missense_Mutation p.S2140F 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 17 48703398 48703398 C T CACNA1G Silent p.S2140S 0.55 TCGA-EE-A3AG-06 17 48735797 48735797 A G ABCC3 Missense_Mutation p.N205S 0.54 deleterious(0.04) possibly_damaging(0.496) TCGA-EE-A3AG-06 17 49052262 49052262 G A SPAG9 Silent p.I1190I 0.57 TCGA-EE-A3AG-06 17 5418189 5418189 C T NLRP1 Nonsense_Mutation p.W1436* 0.97 TCGA-EE-A3AG-06 17 54969117 54969117 G A TRIM25 Missense_Mutation p.P613S 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AG-06 17 56247838 56247838 C T OR4D2 Silent p.G274G 0.61 TCGA-EE-A3AG-06 17 56272453 56272453 C T EPX Silent p.S241S 0.34 TCGA-EE-A3AG-06 17 56344862 56344862 G A LPO Missense_Mutation p.E616K 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 56355300 56355300 G A MPO Silent p.A364A 0.27 TCGA-EE-A3AG-06 17 56405038 56405038 C T BZRAP1 Missense_Mutation p.A82T 0.53 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A3AG-06 17 56620146 56620146 G A C17orf47 Missense_Mutation p.P468S 0.29 tolerated(0.16) probably_damaging(0.932) TCGA-EE-A3AG-06 17 57297947 57297947 G A GDPD1 5'UTR 0.30 TCGA-EE-A3AG-06 17 58678186 58678186 G A PPM1D Silent p.K137K 0.60 TCGA-EE-A3AG-06 17 59481989 59481989 C T TBX2 Silent p.L304L 0.43 TCGA-EE-A3AG-06 17 59485548 59485548 C T TBX2 Missense_Mutation p.S607F 0.30 tolerated(0.63) benign(0.36) TCGA-EE-A3AG-06 17 61557834 61557834 C T ACE Silent p.R264R 0.55 TCGA-EE-A3AG-06 17 61566478 61566478 C T ACE Missense_Mutation p.P876S 0.86 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 17 61685212 61685212 C T TACO1 Silent p.S248S 0.93 TCGA-EE-A3AG-06 17 61886219 61886219 C G DDX42 Missense_Mutation p.L355V 0.40 tolerated(0.14) probably_damaging(0.914) TCGA-EE-A3AG-06 17 62018802 62018802 C T SCN4A Missense_Mutation p.E1614K 0.57 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3AG-06 17 62750165 62750165 C T hsa-mir-6080 RNA 0.87 TCGA-EE-A3AG-06 17 62788625 62788625 G A PLEKHM1P RNA 0.56 TCGA-EE-A3AG-06 17 6704242 6704242 G A TEKT1 Silent p.S291S 0.99 TCGA-EE-A3AG-06 17 67084318 67084318 G A ABCA6 Missense_Mutation p.P1230S 0.51 deleterious(0.01) possibly_damaging(0.725) TCGA-EE-A3AG-06 17 70845886 70845886 G A SLC39A11 Missense_Mutation p.P170L 0.22 tolerated(0.13) benign(0.003) TCGA-EE-A3AG-06 17 71334736 71334736 G A SDK2 Missense_Mutation p.S2170L 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 17 7144074 7144074 G A GABARAP 3'UTR 0.94 TCGA-EE-A3AG-06 17 7144075 7144075 G A GABARAP 3'UTR 0.94 TCGA-EE-A3AG-06 17 7250233 7250233 C T ACAP1 Missense_Mutation p.P372S 0.90 tolerated(0.48) benign(0.001) TCGA-EE-A3AG-06 17 72608905 72608905 G A CD300E Missense_Mutation p.L169F 0.31 tolerated(0.07) possibly_damaging(0.64) TCGA-EE-A3AG-06 17 72791704 72791704 C T TMEM104 Missense_Mutation p.T190I 0.20 tolerated(0.19) benign(0.007) TCGA-EE-A3AG-06 17 7287889 7287889 C T TNK1 Missense_Mutation p.S318F 0.88 deleterious(0) probably_damaging(0.951) TCGA-EE-A3AG-06 17 72949729 72949729 C T HID1 Missense_Mutation p.E628K 0.26 tolerated(0.15) benign(0.327) TCGA-EE-A3AG-06 17 7349271 7349271 G A CHRNB1 Intron 1.00 TCGA-EE-A3AG-06 17 73569259 73569259 G A LLGL2 Silent p.V875V 0.91 TCGA-EE-A3AG-06 17 74004593 74004593 C T EVPL Missense_Mutation p.D1565N 0.69 tolerated(0.87) benign(0.006) TCGA-EE-A3AG-06 17 74141503 74141503 G A RNF157 Intron 0.74 TCGA-EE-A3AG-06 17 74922790 74922790 C T MGAT5B Silent p.P434P 0.55 TCGA-EE-A3AG-06 17 7531019 7531019 G A SAT2 5'UTR 0.96 TCGA-EE-A3AG-06 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.85 TCGA-EE-A3AG-06 17 7605064 7605064 C T WRAP53 Silent p.S304S 0.88 TCGA-EE-A3AG-06 17 76455266 76455266 G A DNAH17 Silent p.F3212F 0.60 TCGA-EE-A3AG-06 17 7662770 7662770 C T DNAH2 Missense_Mutation p.R827W 0.88 possibly_damaging(0.776) TCGA-EE-A3AG-06 17 77079621 77079621 C T ENGASE Silent p.F400F 0.51 TCGA-EE-A3AG-06 17 7801392 7801392 G A CHD3 Missense_Mutation p.E734K 0.86 benign(0.001) TCGA-EE-A3AG-06 17 79650870 79650870 C T ARL16 5'UTR 0.46 TCGA-EE-A3AG-06 17 8137885 8137885 G A CTC1 Missense_Mutation p.P569L 0.88 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AG-06 17 8137886 8137886 G C CTC1 Missense_Mutation p.P569A 0.88 deleterious(0.03) possibly_damaging(0.449) TCGA-EE-A3AG-06 17 8814745 8814745 C T PIK3R5 Missense_Mutation p.G23R 0.92 deleterious(0.02) possibly_damaging(0.901) TCGA-EE-A3AG-06 18 19995914 19995914 C T CTAGE1 Missense_Mutation p.D621N 0.47 deleterious(0.02) probably_damaging(0.92) TCGA-EE-A3AG-06 18 22804973 22804973 G A ZNF521 Missense_Mutation p.S970F 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 18 24496436 24496436 C T CHST9 Silent p.L373L 0.38 TCGA-EE-A3AG-06 18 28725576 28725576 C T DSC1 Missense_Mutation p.E313K 0.38 deleterious(0) possibly_damaging(0.908) TCGA-EE-A3AG-06 18 2892007 2892007 G A EMILIN2 Missense_Mutation p.E628K 0.74 tolerated(0.62) benign(0.08) TCGA-EE-A3AG-06 18 28972276 28972276 C T DSG4 Silent p.T326T 0.39 TCGA-EE-A3AG-06 18 2939491 2939495 GGGAA - LPIN2 Frame_Shift_Del p.F269Rfs*12 0.78 TCGA-EE-A3AG-06 18 30093053 30093053 C T WBP11P1 RNA 0.62 TCGA-EE-A3AG-06 18 31311980 31311980 G A ASXL3 Missense_Mutation p.E310K 0.55 possibly_damaging(0.847) TCGA-EE-A3AG-06 18 31802988 31802988 G A NOL4 Missense_Mutation p.A77V 0.34 tolerated(0.3) benign(0.226) TCGA-EE-A3AG-06 18 43445620 43445620 C T EPG5 Missense_Mutation p.M2242I 0.44 tolerated(0.62) benign(0) TCGA-EE-A3AG-06 18 43535255 43535255 G A EPG5 Missense_Mutation p.S38F 0.58 tolerated_low_confidence(0.55) benign(0.128) TCGA-EE-A3AG-06 18 44555149 44555149 C T TCEB3C Silent p.V355V 0.07 TCGA-EE-A3AG-06 18 45566726 45566726 G A ZBTB7C Silent p.F251F 0.44 TCGA-EE-A3AG-06 18 47463690 47463690 C T MYO5B Silent p.S610S 0.35 TCGA-EE-A3AG-06 18 47777253 47777253 C T CCDC11 Missense_Mutation p.A291T 0.45 tolerated(0.06) benign(0.024) TCGA-EE-A3AG-06 18 48333088 48333088 C T MRO Missense_Mutation p.E92K 0.50 tolerated(0.2) possibly_damaging(0.457) TCGA-EE-A3AG-06 18 50278697 50278697 G A DCC Missense_Mutation p.G122E 0.47 tolerated(1) benign(0.001) TCGA-EE-A3AG-06 18 50705414 50705414 C T DCC Nonsense_Mutation p.R501* 0.44 TCGA-EE-A3AG-06 18 51013171 51013171 C T DCC Silent p.V1247V 0.35 TCGA-EE-A3AG-06 18 51820381 51820381 C T POLI Silent p.S589S 0.32 TCGA-EE-A3AG-06 18 52556589 52556589 G A RAB27B Missense_Mutation p.G201E 0.41 tolerated(0.13) benign(0.022) TCGA-EE-A3AG-06 18 52927248 52927248 G A TCF4 Missense_Mutation p.P436L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 18 55027470 55027470 G A ST8SIA3 Missense_Mutation p.E369K 0.34 benign(0.033) TCGA-EE-A3AG-06 18 55027521 55027521 G A ST8SIA3 3'UTR 0.39 TCGA-EE-A3AG-06 18 55368546 55368546 C T ATP8B1 Splice_Site p.X132_splice 0.49 TCGA-EE-A3AG-06 18 56008369 56008369 C T NEDD4L Nonsense_Mutation p.R409* 0.65 TCGA-EE-A3AG-06 18 56203768 56203768 G A ALPK2 Silent p.I1217I 0.47 TCGA-EE-A3AG-06 18 56204337 56204337 G A ALPK2 Missense_Mutation p.P1028S 0.41 tolerated(0.22) benign(0.005) TCGA-EE-A3AG-06 18 59166487 59166487 C G CDH20 Missense_Mutation p.I105M 0.31 deleterious(0.03) benign(0.006) TCGA-EE-A3AG-06 18 59206374 59206374 G A CDH20 Missense_Mutation p.G509E 0.52 deleterious(0.03) possibly_damaging(0.881) TCGA-EE-A3AG-06 18 63547753 63547753 G A CDH7 Missense_Mutation p.E661K 0.31 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AG-06 18 65181935 65181935 A G DSEL 5'UTR 0.33 TCGA-EE-A3AG-06 18 67614097 67614097 C T CD226 Silent p.T85T 0.52 TCGA-EE-A3AG-06 18 67833372 67833372 G A RTTN Missense_Mutation p.L619F 0.66 tolerated(0.48) benign(0.034) TCGA-EE-A3AG-06 18 6956713 6956713 G A LAMA1 Silent p.T2672T 0.86 TCGA-EE-A3AG-06 18 70205419 70205419 G A CBLN2 Missense_Mutation p.P223S 0.35 deleterious(0.01) benign(0.186) TCGA-EE-A3AG-06 18 76753212 76753212 C T SALL3 Silent p.F407F 0.38 TCGA-EE-A3AG-06 18 77170711 77170711 C T NFATC1 Missense_Mutation p.P133S 0.58 tolerated(0.15) possibly_damaging(0.742) TCGA-EE-A3AG-06 18 77477664 77477664 C T CTDP1 Missense_Mutation p.T733I 0.35 tolerated(0.5) benign(0.006) TCGA-EE-A3AG-06 19 1005144 1005144 C T GRIN3B Silent p.F548F 0.27 TCGA-EE-A3AG-06 19 10132293 10132293 A G RDH8 Silent p.K288K 0.45 TCGA-EE-A3AG-06 19 10395972 10395972 C T ICAM1 3'UTR 0.47 TCGA-EE-A3AG-06 19 10461603 10461603 G A TYK2 Silent p.S1157S 0.56 TCGA-EE-A3AG-06 19 10475409 10475409 G A TYK2 Silent p.F416F 0.53 TCGA-EE-A3AG-06 19 11891506 11891506 T G ZNF441 Missense_Mutation p.F289L 0.61 tolerated(0.08) probably_damaging(0.914) TCGA-EE-A3AG-06 19 12461073 12461073 G A ZNF442 Silent p.F442F 0.57 TCGA-EE-A3AG-06 19 12502327 12502327 G A ZNF799 Silent p.S295S 0.35 TCGA-EE-A3AG-06 19 12575850 12575850 G A ZNF709 Nonsense_Mutation p.R296* 0.59 TCGA-EE-A3AG-06 19 12989369 12989369 G A DNASE2 Missense_Mutation p.P179L 0.56 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AG-06 19 13059062 13059062 C T RAD23A Silent p.S102S 0.24 TCGA-EE-A3AG-06 19 13476261 13476261 C T CACNA1A Silent p.S218S 0.37 TCGA-EE-A3AG-06 19 13923865 13923865 C T ZSWIM4 Missense_Mutation p.A356V 0.51 tolerated(0.18) possibly_damaging(0.682) TCGA-EE-A3AG-06 19 1438513 1438513 C T RPS15 Intron 0.38 TCGA-EE-A3AG-06 19 15067385 15067385 G A SLC1A6 Missense_Mutation p.L358F 0.30 deleterious(0.02) benign(0.004) TCGA-EE-A3AG-06 19 15562563 15562563 C T RASAL3 3'UTR 0.28 TCGA-EE-A3AG-06 19 15784509 15784509 G A CYP4F12 Missense_Mutation p.R57Q 0.65 tolerated(0.13) benign(0.023) TCGA-EE-A3AG-06 19 15905071 15905071 C T OR10H5 Silent p.I71I 0.42 TCGA-EE-A3AG-06 19 15918208 15918208 G A OR10H1 Missense_Mutation p.L214F 0.26 tolerated(0.14) benign(0.308) TCGA-EE-A3AG-06 19 16238862 16238862 C T RAB8A Silent p.F147F 0.27 TCGA-EE-A3AG-06 19 16594862 16594862 A G CALR3 Missense_Mutation p.I186T 0.60 deleterious(0) probably_damaging(0.93) TCGA-EE-A3AG-06 19 16770951 16770951 G A SMIM7 5'UTR 0.17 TCGA-EE-A3AG-06 19 16870130 16870130 G A NWD1 Missense_Mutation p.E622K 0.22 tolerated(0.08) benign(0.137) TCGA-EE-A3AG-06 19 17039796 17039796 C T CPAMD8 Missense_Mutation p.E1081K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 19 17212990 17212990 C T MYO9B Missense_Mutation p.P155S 0.62 deleterious(0.05) possibly_damaging(0.764) TCGA-EE-A3AG-06 19 17654161 17654161 G A FAM129C Silent p.L486L 0.31 TCGA-EE-A3AG-06 19 18499352 18499352 C T GDF15 Silent p.P178P 0.35 TCGA-EE-A3AG-06 19 19115180 19115180 G A SUGP2 Missense_Mutation p.P909L 0.39 deleterious(0.02) benign(0) TCGA-EE-A3AG-06 19 19823621 19823621 G A ZNF14 Missense_Mutation p.R157C 0.27 deleterious(0.01) possibly_damaging(0.802) TCGA-EE-A3AG-06 19 20117385 20117385 C T ZNF682 Missense_Mutation p.G309E 0.51 tolerated(0.06) probably_damaging(0.983) TCGA-EE-A3AG-06 19 20188858 20188858 C T ZNF90 5'UTR 0.62 TCGA-EE-A3AG-06 19 20308600 20308600 C T ZNF486 Missense_Mutation p.R361C 0.54 tolerated(0.24) benign(0.002) TCGA-EE-A3AG-06 19 2099315 2099315 G A IZUMO4 Missense_Mutation p.D224N 0.16 tolerated_low_confidence(1) benign(0.005) TCGA-EE-A3AG-06 19 21300638 21300638 C T ZNF714 Missense_Mutation p.H390Y 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A3AG-06 19 22271622 22271622 C T ZNF257 Missense_Mutation p.S357L 0.61 deleterious(0.03) benign(0.111) TCGA-EE-A3AG-06 19 22375878 22375878 G A ZNF676 Silent p.L24L 0.60 TCGA-EE-A3AG-06 19 24102171 24102171 C T ZNF726 Intron 0.30 TCGA-EE-A3AG-06 19 3002402 3002402 G A TLE2 Nonsense_Mutation p.Q666* 0.73 TCGA-EE-A3AG-06 19 3009539 3009539 C T TLE2 Splice_Site p.X391_splice 0.22 TCGA-EE-A3AG-06 19 3054025 3054025 G A AES Missense_Mutation p.A196V 0.88 deleterious_low_confidence(0.05) benign(0.017) TCGA-EE-A3AG-06 19 3179978 3179978 C T S1PR4 3'UTR 0.65 TCGA-EE-A3AG-06 19 33167846 33167846 C T RGS9BP Missense_Mutation p.A226V 0.64 tolerated(0.92) benign(0.341) TCGA-EE-A3AG-06 19 33321448 33321448 G A SLC7A9 3'UTR 0.30 TCGA-EE-A3AG-06 19 34838929 34838929 C T KIAA0355 Missense_Mutation p.P890L 0.42 deleterious_low_confidence(0) benign(0.313) TCGA-EE-A3AG-06 19 35530543 35530543 G A HPN 5'Flank 0.37 TCGA-EE-A3AG-06 19 35550738 35550738 G A HPN Intron 0.40 TCGA-EE-A3AG-06 19 35551533 35551533 G A HPN Missense_Mutation p.R208Q 0.42 deleterious(0.04) benign(0.017) TCGA-EE-A3AG-06 19 35775857 35775857 G A HAMP Missense_Mutation p.R56Q 0.46 tolerated(0.36) probably_damaging(0.94) TCGA-EE-A3AG-06 19 36018747 36018747 C T SBSN Missense_Mutation p.G146E 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3AG-06 19 36142191 36142191 C T COX6B1 Missense_Mutation p.P16S 0.32 deleterious(0.05) probably_damaging(0.963) TCGA-EE-A3AG-06 19 36168744 36168744 G A UPK1A Missense_Mutation p.D227N 0.27 tolerated(1) benign(0.003) TCGA-EE-A3AG-06 19 36278102 36278102 C T ARHGAP33 Missense_Mutation p.P718S 0.54 deleterious_low_confidence(0.02) probably_damaging(0.909) TCGA-EE-A3AG-06 19 36431365 36431365 C T LRFN3 Silent p.F346F 0.48 TCGA-EE-A3AG-06 19 3643366 3643366 G A PIP5K1C Silent p.L508L 0.33 TCGA-EE-A3AG-06 19 36572341 36572341 C T WDR62 Missense_Mutation p.P414S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 19 3733818 3733818 G A TJP3 Missense_Mutation p.G271E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 19 3733819 3733819 G A TJP3 Silent p.G271G 0.36 TCGA-EE-A3AG-06 19 37643784 37643784 G A ZNF585A Silent p.S284S 0.34 TCGA-EE-A3AG-06 19 37643785 37643785 G A ZNF585A Missense_Mutation p.S284F 0.34 deleterious(0.02) possibly_damaging(0.882) TCGA-EE-A3AG-06 19 37644020 37644020 G A ZNF585A Nonsense_Mutation p.Q206* 0.43 TCGA-EE-A3AG-06 19 37660790 37660790 G A ZNF585A 5'UTR 0.46 TCGA-EE-A3AG-06 19 37676170 37676170 G A ZNF585B Nonsense_Mutation p.Q757* 0.40 TCGA-EE-A3AG-06 19 37854458 37854458 C T HKR1 Silent p.G587G 0.42 TCGA-EE-A3AG-06 19 38127197 38127197 G A ZFP30 Missense_Mutation p.S82F 0.56 tolerated(0.05) probably_damaging(0.991) TCGA-EE-A3AG-06 19 38229581 38229581 G A ZNF573 Missense_Mutation p.H604Y 0.45 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AG-06 19 38572680 38572680 C T SIPA1L3 Missense_Mutation p.P159S 0.50 deleterious(0.02) benign(0.222) TCGA-EE-A3AG-06 19 38655244 38655244 C T SIPA1L3 Silent p.S1302S 0.28 TCGA-EE-A3AG-06 19 39100308 39100308 G A MAP4K1 Missense_Mutation p.P312S 0.26 tolerated(0.51) benign(0.101) TCGA-EE-A3AG-06 19 39100614 39100614 G A MAP4K1 Missense_Mutation p.L288F 0.39 deleterious(0) possibly_damaging(0.873) TCGA-EE-A3AG-06 19 39691087 39691087 G A NCCRP1 Missense_Mutation p.R217Q 0.46 tolerated(0.34) possibly_damaging(0.476) TCGA-EE-A3AG-06 19 39911444 39911444 C T PLEKHG2 Missense_Mutation p.P451S 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.873) TCGA-EE-A3AG-06 19 40392521 40392521 G A FCGBP Silent p.F2661F 0.21 TCGA-EE-A3AG-06 19 40541351 40541351 G A ZNF780B Missense_Mutation p.P472L 0.48 deleterious(0.01) possibly_damaging(0.46) TCGA-EE-A3AG-06 19 40581424 40581424 C T ZNF780A Missense_Mutation p.E310K 0.45 deleterious(0.05) possibly_damaging(0.82) TCGA-EE-A3AG-06 19 40899851 40899851 G A PRX 3'UTR 0.47 TCGA-EE-A3AG-06 19 40901361 40901361 G A PRX Silent p.L966L 0.35 TCGA-EE-A3AG-06 19 41455036 41455036 C T AC092071.1 3'Flank 0.67 TCGA-EE-A3AG-06 19 42474558 42474558 G A ATP1A3 Silent p.I813I 0.50 TCGA-EE-A3AG-06 19 43268180 43268180 G A PSG8 Silent p.S106S 0.41 TCGA-EE-A3AG-06 19 43358117 43358117 G A PSG10P RNA 0.41 TCGA-EE-A3AG-06 19 43358365 43358365 G A PSG10P RNA 0.42 TCGA-EE-A3AG-06 19 43371936 43371936 G A PSG1 3'UTR 0.64 TCGA-EE-A3AG-06 19 43372053 43372053 G A PSG1 3'UTR 0.64 TCGA-EE-A3AG-06 19 43382351 43382351 C T PSG1 Silent p.G48G 0.27 TCGA-EE-A3AG-06 19 44160715 44160715 C T PLAUR Missense_Mutation p.G130S 0.34 tolerated(0.2) probably_damaging(0.996) TCGA-EE-A3AG-06 19 44160716 44160716 C A PLAUR Missense_Mutation p.R129S 0.34 tolerated(0.09) probably_damaging(0.971) TCGA-EE-A3AG-06 19 44224036 44224036 G A IRGC Silent p.R442R 0.31 TCGA-EE-A3AG-06 19 44352446 44352446 C T ZNF283 Missense_Mutation p.H565Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 19 44611150 44611150 G A ZNF224 Silent p.Q279Q 0.38 TCGA-EE-A3AG-06 19 44680637 44680650 TCCCATCAAAGAGT - ZNF226 Frame_Shift_Del p.H409Yfs*9 0.38 TCGA-EE-A3AG-06 19 44778806 44778806 G A ZNF233 Missense_Mutation p.D665N 0.55 tolerated_low_confidence(0.78) benign(0) TCGA-EE-A3AG-06 19 45495627 45495627 C T CLPTM1 Silent p.P564P 0.47 TCGA-EE-A3AG-06 19 46289281 46289281 G A DMWD Silent p.S491S 0.50 TCGA-EE-A3AG-06 19 46543462 46543462 T C IGFL4 Missense_Mutation p.M95V 0.37 tolerated(1) benign(0.007) TCGA-EE-A3AG-06 19 46828875 46828875 G T HIF3A Missense_Mutation p.E473D 0.42 tolerated(0.15) benign(0.033) TCGA-EE-A3AG-06 19 47823206 47823206 G A C5AR1 Missense_Mutation p.V58M 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 19 48620928 48620928 G A LIG1 Silent p.S850S 0.23 TCGA-EE-A3AG-06 19 48620929 48620929 G A LIG1 Missense_Mutation p.S850F 0.24 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 19 48640929 48640929 G A LIG1 Silent p.S368S 0.24 TCGA-EE-A3AG-06 19 48845857 48845857 G A TMEM143 Missense_Mutation p.T302I 0.33 deleterious(0.01) possibly_damaging(0.587) TCGA-EE-A3AG-06 19 49000740 49000740 C T LMTK3 Missense_Mutation p.D1225N 0.38 unknown(0) TCGA-EE-A3AG-06 19 49013377 49013377 C T LMTK3 Silent p.A117A 0.33 TCGA-EE-A3AG-06 19 49107041 49107041 G A FAM83E Missense_Mutation p.P296S 0.58 tolerated(0.44) benign(0.001) TCGA-EE-A3AG-06 19 49107042 49107042 G A FAM83E Silent p.P295P 0.58 TCGA-EE-A3AG-06 19 49340444 49340444 G A PLEKHA4 3'UTR 0.17 TCGA-EE-A3AG-06 19 49538936 49538936 G A CGB1 Silent p.F133F 0.18 TCGA-EE-A3AG-06 19 49548306 49548306 G A CGB5 Missense_Mutation p.E85K 0.71 tolerated(0.64) benign(0.438) TCGA-EE-A3AG-06 19 49548307 49548307 A C CGB5 Missense_Mutation p.E85A 0.71 tolerated(0.59) benign(0.064) TCGA-EE-A3AG-06 19 49565005 49565005 C T NTF4 Missense_Mutation p.E84K 0.45 tolerated(0.36) benign(0.009) TCGA-EE-A3AG-06 19 49671183 49671183 C T TRPM4 Missense_Mutation p.L93F 0.52 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AG-06 19 50098089 50098089 C T PRR12 Missense_Mutation p.S166L 0.18 possibly_damaging(0.519) TCGA-EE-A3AG-06 19 50156105 50156105 C T SCAF1 Missense_Mutation p.S820L 0.16 unknown(0) TCGA-EE-A3AG-06 19 50385371 50385371 C T TBC1D17 Silent p.L201L 0.14 TCGA-EE-A3AG-06 19 50411714 50411714 G A NUP62 Missense_Mutation p.L451F 0.19 deleterious(0.02) possibly_damaging(0.826) TCGA-EE-A3AG-06 19 50461796 50461796 G A SIGLEC11 Silent p.S465S 0.19 TCGA-EE-A3AG-06 19 50461797 50461797 G A SIGLEC11 Missense_Mutation p.S465F 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 19 50492947 50492947 G A VRK3 Missense_Mutation p.P349S 0.20 deleterious(0.03) benign(0.385) TCGA-EE-A3AG-06 19 50863041 50863041 G A NAPSA Silent p.F249F 0.18 TCGA-EE-A3AG-06 19 50938457 50938457 G A MYBPC2 Missense_Mutation p.G20E 0.44 tolerated(1) unknown(0) TCGA-EE-A3AG-06 19 51218985 51218985 G A SHANK1 Silent p.F154F 0.17 TCGA-EE-A3AG-06 19 51466678 51466678 G A KLK6 Silent p.L109L 0.79 TCGA-EE-A3AG-06 19 51509897 51509897 G A KLK9 Missense_Mutation p.P95S 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 19 51509898 51509898 G A KLK9 Silent p.F94F 0.18 TCGA-EE-A3AG-06 19 51527368 51527368 G A KLK11 Silent p.S164S 0.43 TCGA-EE-A3AG-06 19 51628498 51628498 C T SIGLEC9 Silent p.D89D 0.17 TCGA-EE-A3AG-06 19 51650538 51650538 G A SIGLEC7 Missense_Mutation p.M395I 0.46 tolerated(0.16) benign(0.001) TCGA-EE-A3AG-06 19 51650568 51650568 C T SIGLEC7 Silent p.A405A 0.22 TCGA-EE-A3AG-06 19 52023467 52023467 G A SIGLEC6 Missense_Mutation p.P411S 0.19 deleterious(0.05) benign(0.047) TCGA-EE-A3AG-06 19 52034212 52034212 G A SIGLEC6 Silent p.A143A 0.50 TCGA-EE-A3AG-06 19 52272199 52272199 C T FPR2 Silent p.F96F 0.19 TCGA-EE-A3AG-06 19 52327322 52327322 C T FPR3 Silent p.I107I 0.10 TCGA-EE-A3AG-06 19 52825827 52825827 C T ZNF480 Missense_Mutation p.L442F 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 19 52918976 52918976 C T ZNF528 Missense_Mutation p.H291Y 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 19 53014273 53014273 C T ZNF578 Silent p.F213F 0.20 TCGA-EE-A3AG-06 19 53056970 53056970 C T ZNF808 Silent p.L267L 0.14 TCGA-EE-A3AG-06 19 53085749 53085749 C T ZNF701 Missense_Mutation p.S212L 0.16 tolerated(0.12) benign(0.024) TCGA-EE-A3AG-06 19 53304241 53304241 A C ZNF28 Missense_Mutation p.L286R 0.16 deleterious(0) possibly_damaging(0.5) TCGA-EE-A3AG-06 19 53740812 53740812 G A ZNF677 Missense_Mutation p.L390F 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 19 53793363 53793363 C T BIRC8 Missense_Mutation p.G89R 0.50 tolerated(0.14) benign(0.002) TCGA-EE-A3AG-06 19 53884139 53884139 G A ZNF525 Missense_Mutation p.E103K 0.46 tolerated(0.09) probably_damaging(0.991) TCGA-EE-A3AG-06 19 53994699 53994699 C T ZNF813 Missense_Mutation p.H405Y 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 19 54930474 54930474 C T TTYH1 Missense_Mutation p.A100V 0.40 tolerated(1) benign(0) TCGA-EE-A3AG-06 19 55086256 55086256 G A LILRA2 Silent p.G137G 0.16 TCGA-EE-A3AG-06 19 55147166 55147166 G A LILRB1 Intron 0.30 TCGA-EE-A3AG-06 19 55148369 55148369 G A LILRB1 3'UTR 0.32 TCGA-EE-A3AG-06 19 55401263 55401263 C T FCAR 3'UTR 0.43 TCGA-EE-A3AG-06 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.57 deleterious(0.03) benign(0.227) TCGA-EE-A3AG-06 19 55451005 55451005 G A NLRP7 Silent p.F394F 0.26 TCGA-EE-A3AG-06 19 55451413 55451413 C T NLRP7 Silent p.L258L 0.14 TCGA-EE-A3AG-06 19 55451819 55451819 C T NLRP7 Nonsense_Mutation p.W123* 0.72 TCGA-EE-A3AG-06 19 55525799 55525799 G A GP6 Missense_Mutation p.S505L 0.19 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EE-A3AG-06 19 55689657 55689657 C T SYT5 Silent p.K53K 0.08 TCGA-EE-A3AG-06 19 55879926 55879926 G A IL11 Silent p.F64F 0.26 TCGA-EE-A3AG-06 19 56223323 56223323 G A NLRP9 Missense_Mutation p.P896S 0.74 tolerated(0.52) benign(0.002) TCGA-EE-A3AG-06 19 56243522 56243522 T C NLRP9 Missense_Mutation p.T559A 0.15 tolerated(0.49) benign(0.003) TCGA-EE-A3AG-06 19 56390197 56390197 G A NLRP4 Missense_Mutation p.D912N 0.11 tolerated(0.13) possibly_damaging(0.566) TCGA-EE-A3AG-06 19 56424369 56424369 T A NLRP13 Nonsense_Mutation p.K272* 0.13 TCGA-EE-A3AG-06 19 56436372 56436372 G A NLRP13 Missense_Mutation p.P117S 0.56 tolerated(0.5) benign(0.02) TCGA-EE-A3AG-06 19 56466362 56466362 C T NLRP8 Missense_Mutation p.S313F 0.66 deleterious(0) probably_damaging(0.959) TCGA-EE-A3AG-06 19 56935651 56935651 C T ZNF583 Missense_Mutation p.H542Y 0.13 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AG-06 19 57640713 57640713 C T USP29 Missense_Mutation p.L224F 0.59 tolerated(1) benign(0.055) TCGA-EE-A3AG-06 19 57641411 57641411 C T USP29 Silent p.I456I 0.60 TCGA-EE-A3AG-06 19 57646552 57646552 G A ZIM3 Missense_Mutation p.H385Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AG-06 19 57665801 57665801 G A DUXA Silent p.F198F 0.24 TCGA-EE-A3AG-06 19 57867617 57867617 C T ZNF304 Missense_Mutation p.S127L 0.18 tolerated(0.85) benign(0.004) TCGA-EE-A3AG-06 19 57932645 57932645 C T ZNF17 Silent p.S595S 0.55 TCGA-EE-A3AG-06 19 58234583 58234583 C T ZNF671 Silent p.L88L 0.54 TCGA-EE-A3AG-06 19 58437585 58437585 G A ZNF418 Missense_Mutation p.S655L 0.15 deleterious(0.04) probably_damaging(0.949) TCGA-EE-A3AG-06 19 5843963 5843963 G A FUT3 Silent p.F296F 0.68 TCGA-EE-A3AG-06 19 58477955 58477955 G A C19orf18 Missense_Mutation p.S105L 0.76 deleterious(0.01) possibly_damaging(0.776) TCGA-EE-A3AG-06 19 58511242 58511242 G A ZNF606 Silent p.A37A 0.79 TCGA-EE-A3AG-06 19 58983383 58983383 C T ZNF324 Silent p.T508T 0.16 TCGA-EE-A3AG-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.23 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3AG-06 19 6147620 6147620 G A ACSBG2 Silent p.K77K 0.24 TCGA-EE-A3AG-06 19 6433579 6433579 C T SLC25A41 Nonsense_Mutation p.W42* 0.32 TCGA-EE-A3AG-06 19 6685135 6685135 G A C3 Missense_Mutation p.A1278V 0.54 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 19 6707815 6707815 C T C3 Silent p.R657R 0.62 TCGA-EE-A3AG-06 19 7594473 7594473 C T MCOLN1 Intron 0.35 TCGA-EE-A3AG-06 19 7684462 7684462 G A XAB2 3'UTR 0.46 TCGA-EE-A3AG-06 19 7987171 7987171 G A SNAPC2 Silent p.K208K 0.31 TCGA-EE-A3AG-06 19 8154839 8154839 G A FBN3 Silent p.A2063A 0.17 TCGA-EE-A3AG-06 19 831860 831860 G A AZU1 Missense_Mutation p.G247R 0.55 tolerated(0.48) benign(0.074) TCGA-EE-A3AG-06 19 8563512 8563512 G A PRAM1 Missense_Mutation p.P394S 0.70 deleterious(0.02) possibly_damaging(0.858) TCGA-EE-A3AG-06 19 8645836 8645836 G A ADAMTS10 Nonsense_Mutation p.Q1085* 0.28 TCGA-EE-A3AG-06 19 8657694 8657694 G A ADAMTS10 Missense_Mutation p.P514S 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3AG-06 19 9008208 9008208 G A MUC16 Missense_Mutation p.P13115L 0.48 possibly_damaging(0.833) TCGA-EE-A3AG-06 19 9015627 9015627 C T MUC16 Silent p.Q12732Q 0.60 TCGA-EE-A3AG-06 19 9048013 9048013 C T MUC16 Silent p.G11206G 0.58 TCGA-EE-A3AG-06 19 9056795 9056795 G A MUC16 Silent p.A10217A 0.30 TCGA-EE-A3AG-06 19 9066457 9066457 G A MUC16 Missense_Mutation p.P6997S 0.64 unknown(0) TCGA-EE-A3AG-06 19 9068232 9068232 G A MUC16 Missense_Mutation p.S6405F 0.27 unknown(0) TCGA-EE-A3AG-06 19 9069614 9069614 G A MUC16 Silent p.S5944S 0.68 TCGA-EE-A3AG-06 19 9070567 9070567 C T MUC16 Missense_Mutation p.E5627K 0.53 unknown(0) TCGA-EE-A3AG-06 19 9072421 9072421 C T MUC16 Missense_Mutation p.G5009R 0.24 unknown(0) TCGA-EE-A3AG-06 19 9075413 9075413 G A MUC16 Silent p.S4011S 0.23 TCGA-EE-A3AG-06 19 9075414 9075414 G A MUC16 Missense_Mutation p.S4011F 0.22 unknown(0) TCGA-EE-A3AG-06 19 9075994 9075994 G A MUC16 Missense_Mutation p.P3818S 0.27 unknown(0) TCGA-EE-A3AG-06 19 9076487 9076487 C T MUC16 Silent p.K3653K 0.27 TCGA-EE-A3AG-06 19 9086175 9086175 A T MUC16 Missense_Mutation p.D1880E 0.66 unknown(0) TCGA-EE-A3AG-06 19 9086177 9086177 C T MUC16 Missense_Mutation p.D1880N 0.68 unknown(0) TCGA-EE-A3AG-06 19 9088106 9088106 G A MUC16 Missense_Mutation p.P1237S 0.28 unknown(0) TCGA-EE-A3AG-06 19 9089251 9089251 G A MUC16 Missense_Mutation p.P855L 0.60 unknown(0) TCGA-EE-A3AG-06 19 9090497 9090497 G A MUC16 Missense_Mutation p.L440F 0.62 unknown(0) TCGA-EE-A3AG-06 19 9204520 9204520 C T OR1M1 Silent p.L200L 0.52 TCGA-EE-A3AG-06 19 9237262 9237262 C T OR7G3 Missense_Mutation p.R122Q 0.35 deleterious(0) benign(0.132) TCGA-EE-A3AG-06 19 9271094 9271094 C T ZNF317 Missense_Mutation p.A258V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 19 9296615 9296615 C T OR7D2 Missense_Mutation p.S53F 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.598) TCGA-EE-A3AG-06 19 929675 929675 C T ARID3A Silent p.P49P 0.56 TCGA-EE-A3AG-06 19 9763879 9763879 G A ZNF562 Missense_Mutation p.P343S 0.36 tolerated(0.07) probably_damaging(0.994) TCGA-EE-A3AG-06 19 9801900 9801900 C T ZNF812 Silent p.E93E 0.47 TCGA-EE-A3AG-06 1 101004767 101004767 C T GPR88 Missense_Mutation p.A82V 0.55 tolerated(0.13) possibly_damaging(0.52) TCGA-EE-A3AG-06 1 10714564 10714564 C T CASZ1 Missense_Mutation p.D584N 0.92 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A3AG-06 1 107979412 107979412 G C NTNG1 Missense_Mutation p.G461R 0.22 deleterious(0.02) unknown(0) TCGA-EE-A3AG-06 1 109735476 109735476 C T KIAA1324 Missense_Mutation p.P643S 0.62 deleterious(0.02) benign(0.307) TCGA-EE-A3AG-06 1 109810212 109810212 C T CELSR2 Missense_Mutation p.P2019L 0.19 deleterious(0.02) benign(0.115) TCGA-EE-A3AG-06 1 110050499 110050499 C T AMIGO1 Missense_Mutation p.E346K 0.65 tolerated(0.17) benign(0.103) TCGA-EE-A3AG-06 1 110163645 110163645 C T AMPD2 Missense_Mutation p.R4C 0.83 deleterious_low_confidence(0.04) benign(0.003) TCGA-EE-A3AG-06 1 111216889 111216889 G A KCNA3 Silent p.S181S 0.16 TCGA-EE-A3AG-06 1 111861282 111861282 G A CHIA Silent p.G299G 0.16 TCGA-EE-A3AG-06 1 11190630 11190630 C T MTOR Missense_Mutation p.E1857K 0.89 tolerated(0.29) benign(0.044) TCGA-EE-A3AG-06 1 111957394 111957394 G A OVGP1 Missense_Mutation p.P577S 0.63 tolerated_low_confidence(0.24) benign(0.133) TCGA-EE-A3AG-06 1 112031393 112031393 G A ADORA3 Silent p.I237I 0.21 TCGA-EE-A3AG-06 1 113059861 113059861 G A WNT2B Missense_Mutation p.R267Q 0.73 deleterious(0.03) benign(0.309) TCGA-EE-A3AG-06 1 11334047 11334047 C T UBIAD1 Silent p.S153S 0.80 TCGA-EE-A3AG-06 1 114224972 114224972 A G MAGI3 Intron 0.32 TCGA-EE-A3AG-06 1 114380814 114380814 G A PTPN22 Missense_Mutation p.P403L 0.21 tolerated(0.07) benign(0.031) TCGA-EE-A3AG-06 1 115523998 115523998 G A SYCP1 Nonsense_Mutation p.W808* 0.59 TCGA-EE-A3AG-06 1 115576933 115576933 C T TSHB 3'UTR 0.38 TCGA-EE-A3AG-06 1 116609274 116609274 C T SLC22A15 Missense_Mutation p.S500L 0.63 tolerated(0.05) benign(0.343) TCGA-EE-A3AG-06 1 117699533 117699533 G A VTCN1 Silent p.S36S 0.20 TCGA-EE-A3AG-06 1 118598527 118598527 C T SPAG17 Missense_Mutation p.E851K 0.69 deleterious(0) possibly_damaging(0.84) TCGA-EE-A3AG-06 1 118629581 118629581 G A SPAG17 Silent p.S470S 0.21 TCGA-EE-A3AG-06 1 120438381 120438381 C T ADAM30 Silent p.R193R 0.23 TCGA-EE-A3AG-06 1 120438567 120438567 C T ADAM30 Silent p.G131G 0.23 TCGA-EE-A3AG-06 1 12082369 12082369 C T MIIP Missense_Mutation p.P111L 0.93 tolerated(0.06) possibly_damaging(0.905) TCGA-EE-A3AG-06 1 1263174 1263174 C T GLTPD1 3'UTR 0.68 TCGA-EE-A3AG-06 1 12853656 12853656 C T PRAMEF1 Missense_Mutation p.R94C 0.62 tolerated(0.1) possibly_damaging(0.502) TCGA-EE-A3AG-06 1 12921509 12921509 C T PRAMEF2 Missense_Mutation p.R434W 0.76 deleterious(0.03) benign(0.006) TCGA-EE-A3AG-06 1 12939636 12939636 C T PRAMEF4 Missense_Mutation p.G389E 0.85 tolerated(0.2) probably_damaging(0.992) TCGA-EE-A3AG-06 1 142713214 142713214 G A RP11-417J8.6 RNA 0.61 TCGA-EE-A3AG-06 1 145761400 145761400 G A PDZK1 Missense_Mutation p.E405K 0.21 deleterious(0) probably_damaging(0.96) TCGA-EE-A3AG-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.29 TCGA-EE-A3AG-06 1 148004557 148004557 G A NBPF14 Silent p.F925F 0.08 TCGA-EE-A3AG-06 1 149858228 149858228 G A HIST2H2BE 5'UTR 0.27 TCGA-EE-A3AG-06 1 151149094 151149094 G A VPS72 3'UTR 0.53 TCGA-EE-A3AG-06 1 151773936 151773936 G A LINGO4 Silent p.I415I 0.60 TCGA-EE-A3AG-06 1 151820666 151820666 C G THEM5 Missense_Mutation p.R189S 0.59 tolerated(0.22) benign(0.009) TCGA-EE-A3AG-06 1 152080064 152080064 C T TCHH Missense_Mutation p.E1877K 0.33 benign(0.292) TCGA-EE-A3AG-06 1 152187684 152187684 C T HRNR Missense_Mutation p.G2141R 0.07 unknown(0) TCGA-EE-A3AG-06 1 152191013 152191013 G A HRNR Missense_Mutation p.S1031L 0.57 unknown(0) TCGA-EE-A3AG-06 1 152281741 152281741 G A FLG Missense_Mutation p.S1874L 0.62 benign(0.307) TCGA-EE-A3AG-06 1 152282637 152282637 C T FLG Silent p.Q1575Q 0.62 TCGA-EE-A3AG-06 1 152285860 152285860 C T FLG Missense_Mutation p.R501Q 0.63 benign(0.177) TCGA-EE-A3AG-06 1 152538273 152538273 G A LCE3E 3'UTR 0.50 TCGA-EE-A3AG-06 1 152636573 152636573 C T LCE2D 5'UTR 0.59 TCGA-EE-A3AG-06 1 152732973 152732973 C T KPRP Silent p.P303P 0.22 TCGA-EE-A3AG-06 1 152760030 152760030 C T LCE1E Silent p.S85S 0.26 TCGA-EE-A3AG-06 1 153973397 153973397 G A NUP210L Missense_Mutation p.S1774F 0.60 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A3AG-06 1 154229846 154229846 C T UBAP2L Missense_Mutation p.P793L 0.57 deleterious(0.03) unknown(0) TCGA-EE-A3AG-06 1 154705554 154705554 G A KCNN3 Silent p.F505F 0.69 TCGA-EE-A3AG-06 1 154987077 154987077 C T ZBTB7B Intron 0.31 TCGA-EE-A3AG-06 1 155002639 155002639 C T DCST2 Missense_Mutation p.M366I 0.60 tolerated(0.08) benign(0.11) TCGA-EE-A3AG-06 1 155160214 155160214 C T MUC1 Silent p.T355T 0.33 TCGA-EE-A3AG-06 1 155230384 155230384 G A SCAMP3 Missense_Mutation p.P71S 0.30 tolerated(0.1) benign(0.005) TCGA-EE-A3AG-06 1 156105073 156105073 C T LMNA Silent p.L302L 0.46 TCGA-EE-A3AG-06 1 1563922 1563922 C T MIB2 Silent p.L789L 0.74 TCGA-EE-A3AG-06 1 157514299 157514299 G A FCRL5 Silent p.F199F 0.62 TCGA-EE-A3AG-06 1 157667079 157667079 C T FCRL3 Missense_Mutation p.S232N 0.56 tolerated(0.6) benign(0.021) TCGA-EE-A3AG-06 1 157773774 157773774 G A FCRL1 Silent p.A60A 0.62 TCGA-EE-A3AG-06 1 158368976 158368976 G A OR10T2 Missense_Mutation p.S94F 0.52 deleterious(0.02) probably_damaging(0.914) TCGA-EE-A3AG-06 1 158389856 158389856 G A OR10K2 Silent p.S267S 0.67 TCGA-EE-A3AG-06 1 158596768 158596768 C T SPTA1 Silent p.E1898E 0.52 TCGA-EE-A3AG-06 1 158607858 158607858 G A SPTA1 Silent p.F1718F 0.26 TCGA-EE-A3AG-06 1 158641235 158641235 C T SPTA1 Silent p.L499L 0.32 TCGA-EE-A3AG-06 1 158819007 158819007 G A MNDA Missense_Mutation p.G402R 0.53 tolerated(0.48) benign(0.004) TCGA-EE-A3AG-06 1 159043271 159043271 C T AIM2 Missense_Mutation p.E7K 0.62 tolerated(0.73) probably_damaging(0.985) TCGA-EE-A3AG-06 1 159284216 159284216 G A OR10J3 Silent p.I78I 0.52 TCGA-EE-A3AG-06 1 159505776 159505776 C T OR10J5 Missense_Mutation p.E8K 0.17 tolerated(0.41) benign(0.002) TCGA-EE-A3AG-06 1 159683350 159683350 C T CRP Missense_Mutation p.G214S 0.28 deleterious(0) probably_damaging(0.947) TCGA-EE-A3AG-06 1 159799767 159799767 G A SLAMF8 Missense_Mutation p.R51Q 0.36 deleterious(0.01) possibly_damaging(0.885) TCGA-EE-A3AG-06 1 159860385 159860385 G A CCDC19 Missense_Mutation p.P53S 0.59 deleterious(0.05) possibly_damaging(0.662) TCGA-EE-A3AG-06 1 160011427 160011427 G A KCNJ10 Missense_Mutation p.S299F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 160914860 160914860 C T ITLN2 3'UTR 0.70 TCGA-EE-A3AG-06 1 161200769 161200769 C T NR1I3 Intron 0.73 TCGA-EE-A3AG-06 1 161275690 161275690 C T MPZ Silent p.G241G 0.62 TCGA-EE-A3AG-06 1 161594362 161594362 C T FCGR3B Missense_Mutation p.M251I 0.60 tolerated(0.22) benign(0.09) TCGA-EE-A3AG-06 1 169391163 169391163 G A CCDC181 Missense_Mutation p.T169I 0.34 tolerated(0.11) benign(0.022) TCGA-EE-A3AG-06 1 170967596 170967596 G A MROH9 Intron 0.42 TCGA-EE-A3AG-06 1 171073016 171073016 C T FMO3 Missense_Mutation p.P75S 0.27 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A3AG-06 1 171251243 171251243 G A FMO1 Silent p.K318K 0.30 TCGA-EE-A3AG-06 1 171890898 171890898 C T DNM3 Missense_Mutation p.P58S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 17265513 17265513 C T CROCC Missense_Mutation p.P495L 0.94 probably_damaging(0.991) TCGA-EE-A3AG-06 1 173523904 173523904 G A SLC9C2 Missense_Mutation p.S422L 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A3AG-06 1 173628282 173628282 C T ANKRD45 Silent p.V92V 0.57 TCGA-EE-A3AG-06 1 175348708 175348708 G A TNR Missense_Mutation p.T648I 0.59 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A3AG-06 1 176564661 176564661 G A PAPPA2 Missense_Mutation p.D641N 0.22 tolerated(0.25) possibly_damaging(0.802) TCGA-EE-A3AG-06 1 176668500 176668500 A T PAPPA2 Missense_Mutation p.D1004V 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A3AG-06 1 176740314 176740314 G A PAPPA2 Silent p.R1571R 0.39 TCGA-EE-A3AG-06 1 176762724 176762724 C T PAPPA2 Silent p.I1683I 0.57 TCGA-EE-A3AG-06 1 176926840 176926840 G A ASTN1 Missense_Mutation p.R621C 0.65 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AG-06 1 177030324 177030324 G A ASTN1 Missense_Mutation p.H121Y 0.23 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-EE-A3AG-06 1 179310213 179310213 C T SOAT1 Missense_Mutation p.T183I 0.19 tolerated(0.39) benign(0.004) TCGA-EE-A3AG-06 1 179562978 179562978 G A TDRD5 Missense_Mutation p.E206K 0.25 tolerated(0.16) benign(0.012) TCGA-EE-A3AG-06 1 179632549 179632549 G A TDRD5 Missense_Mutation p.G858R 0.51 tolerated(0.15) possibly_damaging(0.747) TCGA-EE-A3AG-06 1 179783223 179783223 C T FAM163A Missense_Mutation p.P135S 0.56 tolerated(0.24) benign(0.156) TCGA-EE-A3AG-06 1 180240437 180240437 G A LHX4 Intron 0.46 TCGA-EE-A3AG-06 1 180775261 180775261 C T XPR1 Missense_Mutation p.R171C 0.63 tolerated(0.08) possibly_damaging(0.892) TCGA-EE-A3AG-06 1 181741296 181741296 G A CACNA1E Missense_Mutation p.E1690K 0.57 tolerated(0.45) possibly_damaging(0.635) TCGA-EE-A3AG-06 1 182544549 182544549 C T RNASEL Missense_Mutation p.G735E 0.24 tolerated_low_confidence(0.73) unknown(0) TCGA-EE-A3AG-06 1 182852480 182852480 C T DHX9 Missense_Mutation p.P1041S 0.59 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AG-06 1 183857693 183857693 C T RGL1 Missense_Mutation p.T381I 0.25 deleterious(0.01) possibly_damaging(0.695) TCGA-EE-A3AG-06 1 183857695 183857695 T C RGL1 Missense_Mutation p.W382R 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 183914630 183914630 G A COLGALT2 Missense_Mutation p.S402F 0.31 deleterious(0.02) possibly_damaging(0.88) TCGA-EE-A3AG-06 1 184792358 184792358 G A FAM129A Missense_Mutation p.R310C 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 185934984 185934984 G A HMCN1 Missense_Mutation p.D717N 0.28 probably_damaging(0.967) TCGA-EE-A3AG-06 1 186022088 186022088 C T HMCN1 Silent p.P2194P 0.50 TCGA-EE-A3AG-06 1 186276646 186276646 A C PRG4 Missense_Mutation p.K599Q 0.57 unknown(0) TCGA-EE-A3AG-06 1 186880420 186880420 C T PLA2G4A Nonsense_Mutation p.Q153* 0.52 TCGA-EE-A3AG-06 1 19181252 19181252 C T TAS1R2 Missense_Mutation p.E238K 0.53 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A3AG-06 1 19566418 19566418 G A EMC1 Missense_Mutation p.P283L 0.25 tolerated(0.17) benign(0.003) TCGA-EE-A3AG-06 1 196694353 196694353 G A CFH Missense_Mutation p.G600E 0.62 tolerated(0.16) probably_damaging(0.925) TCGA-EE-A3AG-06 1 197889293 197889293 G A LHX9 Silent p.E122E 0.26 TCGA-EE-A3AG-06 1 201060870 201060870 G A CACNA1S Missense_Mutation p.H198Y 0.38 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AG-06 1 201860657 201860657 C T SHISA4 Missense_Mutation p.P170S 0.51 tolerated(0.05) probably_damaging(0.96) TCGA-EE-A3AG-06 1 204588132 204588132 G A LRRN2 Missense_Mutation p.A330V 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 204985599 204985599 G A NFASC Missense_Mutation p.E1219K 0.27 deleterious(0.01) unknown(0) TCGA-EE-A3AG-06 1 205492680 205492680 G A CDK18 Missense_Mutation p.G67E 0.55 tolerated_low_confidence(0.47) benign(0.02) TCGA-EE-A3AG-06 1 205549071 205549071 C T MFSD4 Silent p.F141F 0.80 TCGA-EE-A3AG-06 1 205592869 205592869 G A ELK4 Missense_Mutation p.R48C 0.60 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 1 207196695 207196695 G A C1orf116 Silent p.I138I 0.58 TCGA-EE-A3AG-06 1 207851592 207851592 G A CR1L Silent p.V109V 0.56 TCGA-EE-A3AG-06 1 207867858 207867858 C T CR1L Silent p.T208T 0.26 TCGA-EE-A3AG-06 1 209964072 209964072 G A IRF6 Silent p.F276F 0.51 TCGA-EE-A3AG-06 1 211462668 211462668 C T RCOR3 Missense_Mutation p.S290F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 1 212115247 212115247 G A INTS7 Silent p.S936S 0.64 TCGA-EE-A3AG-06 1 214816005 214816005 T A CENPF Missense_Mutation p.L1442I 0.64 probably_damaging(0.996) TCGA-EE-A3AG-06 1 216061780 216061780 G A USH2A Silent p.P2737P 0.25 TCGA-EE-A3AG-06 1 21887229 21887229 C T ALPL Silent p.L58L 0.26 TCGA-EE-A3AG-06 1 22173922 22173922 G A HSPG2 Missense_Mutation p.R2697W 0.25 probably_damaging(1) TCGA-EE-A3AG-06 1 222713516 222713516 C T HHIPL2 Missense_Mutation p.G429E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 223283826 223283826 G A TLR5 Missense_Mutation p.P850S 0.25 tolerated(0.25) benign(0.002) TCGA-EE-A3AG-06 1 22332324 22332324 C T CELA3A Intron 0.17 TCGA-EE-A3AG-06 1 223991885 223991885 C T TP53BP2 Missense_Mutation p.G214R 0.24 deleterious(0.04) probably_damaging(0.938) TCGA-EE-A3AG-06 1 224477369 224477369 G A NVL Silent p.H464H 0.34 TCGA-EE-A3AG-06 1 226420283 226420283 G A LIN9 Silent p.I532I 0.23 TCGA-EE-A3AG-06 1 2268200 2268200 G A MORN1 Missense_Mutation p.P376S 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 1 227935648 227935648 C T SNAP47 Silent p.L116L 0.32 TCGA-EE-A3AG-06 1 227947188 227947188 T C SNAP47 Splice_Site p.X375_splice 0.61 TCGA-EE-A3AG-06 1 22828003 22828003 G C ZBTB40 Missense_Mutation p.E284Q 0.21 tolerated(0.15) unknown(0) TCGA-EE-A3AG-06 1 228362887 228362887 C T IBA57 Silent p.A248A 0.24 TCGA-EE-A3AG-06 1 228471227 228471227 G A OBSCN Missense_Mutation p.E3350K 0.63 probably_damaging(0.956) TCGA-EE-A3AG-06 1 228475871 228475871 G A OBSCN Silent p.K3736K 0.29 TCGA-EE-A3AG-06 1 228479646 228479646 G A OBSCN Missense_Mutation p.E3892K 0.22 possibly_damaging(0.783) TCGA-EE-A3AG-06 1 228525717 228525717 G A OBSCN Missense_Mutation p.E6582K 0.73 probably_damaging(0.997) TCGA-EE-A3AG-06 1 228560448 228560448 G A OBSCN Missense_Mutation p.M8280I 0.62 benign(0.387) TCGA-EE-A3AG-06 1 228582770 228582770 A G TRIM11 Missense_Mutation p.V348A 0.45 deleterious(0) probably_damaging(0.909) TCGA-EE-A3AG-06 1 229606485 229606485 G C NUP133 Missense_Mutation p.L640V 0.22 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AG-06 1 229606486 229606486 C G NUP133 Missense_Mutation p.L639F 0.22 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AG-06 1 230930959 230930959 G A CAPN9 Missense_Mutation p.D641N 0.67 tolerated(0.18) benign(0.064) TCGA-EE-A3AG-06 1 231044507 231044507 C T TTC13 Missense_Mutation p.G807S 0.34 tolerated(0.98) benign(0.011) TCGA-EE-A3AG-06 1 231333210 231333210 C T TRIM67 Nonsense_Mutation p.Q380* 0.31 TCGA-EE-A3AG-06 1 231376913 231376913 G A C1orf131 5'UTR 0.57 TCGA-EE-A3AG-06 1 235316029 235316029 G A RBM34 Missense_Mutation p.R217C 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 1 235505825 235505825 C T GGPS1 Missense_Mutation p.S214L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 236645630 236645630 C T EDARADD Missense_Mutation p.P110L 0.68 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 1 23757530 23757530 G A ASAP3 Missense_Mutation p.P879S 0.18 tolerated_low_confidence(0.08) benign(0.01) TCGA-EE-A3AG-06 1 237972271 237972271 G A RYR2 Missense_Mutation p.R4790Q 0.28 possibly_damaging(0.857) TCGA-EE-A3AG-06 1 240071798 240071798 C T CHRM3 Silent p.S349S 0.60 TCGA-EE-A3AG-06 1 240370636 240370636 G A FMN2 Missense_Mutation p.E842K 0.72 unknown(0) TCGA-EE-A3AG-06 1 2421304 2421304 G A PLCH2 Missense_Mutation p.D478N 0.66 tolerated(0.23) possibly_damaging(0.678) TCGA-EE-A3AG-06 1 242271141 242271141 C T PLD5 Silent p.R357R 0.59 TCGA-EE-A3AG-06 1 24388451 24388451 C T MYOM3 Missense_Mutation p.D1307N 0.22 deleterious(0.03) probably_damaging(0.976) TCGA-EE-A3AG-06 1 24426247 24426247 C T MYOM3 Silent p.R193R 0.23 TCGA-EE-A3AG-06 1 244587324 244587324 G A ADSS Missense_Mutation p.S171L 0.62 deleterious(0) probably_damaging(0.929) TCGA-EE-A3AG-06 1 246810669 246810669 C T CNST Missense_Mutation p.S389F 0.69 tolerated(0.09) benign(0.013) TCGA-EE-A3AG-06 1 247201468 247201468 G C ZNF670 Missense_Mutation p.I151M 0.62 tolerated(0.28) benign(0.305) TCGA-EE-A3AG-06 1 247464520 247464520 G A ZNF496 Silent p.I355I 0.19 TCGA-EE-A3AG-06 1 247597405 247597405 G A NLRP3 Nonsense_Mutation p.W776* 0.67 TCGA-EE-A3AG-06 1 247875297 247875297 G A OR6F1 Missense_Mutation p.S254F 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3AG-06 1 247921190 247921190 G A OR1C1 Silent p.I173I 0.64 TCGA-EE-A3AG-06 1 248224344 248224344 C T OR2L3 Missense_Mutation p.R121C 0.63 deleterious(0.01) benign(0.052) TCGA-EE-A3AG-06 1 248366863 248366863 C T OR2M3 Missense_Mutation p.S165F 0.59 deleterious(0.02) benign(0.185) TCGA-EE-A3AG-06 1 248402323 248402323 C T OR2M4 Silent p.V31V 0.53 TCGA-EE-A3AG-06 1 2520915 2520915 C T FAM213B 3'UTR 0.26 TCGA-EE-A3AG-06 1 26393997 26393997 G A TRIM63 5'UTR 0.21 TCGA-EE-A3AG-06 1 26524252 26524252 C T CATSPER4 Missense_Mutation p.P179S 0.66 tolerated(0.81) benign(0.004) TCGA-EE-A3AG-06 1 27100350 27100350 C T ARID1A Silent p.F1354F 0.63 TCGA-EE-A3AG-06 1 27339028 27339028 G A FAM46B Missense_Mutation p.P45L 0.16 tolerated(0.41) benign(0) TCGA-EE-A3AG-06 1 27688716 27688716 G A MAP3K6 Silent p.A427A 0.22 TCGA-EE-A3AG-06 1 27949630 27949630 G A FGR Silent p.A84A 0.15 TCGA-EE-A3AG-06 1 28563014 28563014 C T ATPIF1 Intron 0.66 TCGA-EE-A3AG-06 1 31409621 31409621 C T PUM1 Missense_Mutation p.E1102K 0.71 deleterious(0.01) benign(0.27) TCGA-EE-A3AG-06 1 32051447 32051447 G A TINAGL1 Missense_Mutation p.R396Q 0.53 tolerated(0.22) benign(0.023) TCGA-EE-A3AG-06 1 32052509 32052509 G A TINAGL1 Missense_Mutation p.E445K 0.71 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 1 32207543 32207543 C T BAI2 Nonsense_Mutation p.W481* 0.65 TCGA-EE-A3AG-06 1 34052167 34052167 C T CSMD2 Missense_Mutation p.E2332K 0.70 tolerated(0.08) benign(0.217) TCGA-EE-A3AG-06 1 34174710 34174710 G A CSMD2 Silent p.L1145L 0.60 TCGA-EE-A3AG-06 1 35370262 35370262 C T DLGAP3 Silent p.R241R 0.69 TCGA-EE-A3AG-06 1 35559569 35559569 C T ZMYM1 5'UTR 0.61 TCGA-EE-A3AG-06 1 35563145 35563145 A C ZMYM1 Silent p.R133R 0.14 TCGA-EE-A3AG-06 1 36360795 36360795 C T AGO1 Silent p.N315N 0.26 TCGA-EE-A3AG-06 1 36360796 36360796 C T AGO1 Missense_Mutation p.L316F 0.25 tolerated(1) probably_damaging(0.999) TCGA-EE-A3AG-06 1 38079995 38079995 G A RSPO1 Silent p.I99I 0.68 TCGA-EE-A3AG-06 1 38227001 38227001 C T EPHA10 Intron 0.61 TCGA-EE-A3AG-06 1 38323218 38323218 G A MTF1 Missense_Mutation p.S38F 0.26 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 1 40131815 40131815 C T NT5C1A Missense_Mutation p.E77K 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A3AG-06 1 41300637 41300637 A C KCNQ4 Splice_Site p.X538_splice 0.66 TCGA-EE-A3AG-06 1 41608760 41608760 A G SCMH1 Missense_Mutation p.F58L 0.67 deleterious(0) possibly_damaging(0.578) TCGA-EE-A3AG-06 1 41948200 41948200 C G EDN2 Missense_Mutation p.R94T 0.73 tolerated(0.23) benign(0.076) TCGA-EE-A3AG-06 1 43774700 43774700 C T TIE1 Silent p.F362F 0.77 TCGA-EE-A3AG-06 1 43805060 43805060 C T MPL Silent p.R170R 0.73 TCGA-EE-A3AG-06 1 43893239 43893239 C T SZT2 Missense_Mutation p.R1156C 0.22 tolerated(0.1) benign(0) TCGA-EE-A3AG-06 1 44415498 44415498 C T IPO13 Missense_Mutation p.A165V 0.68 tolerated(0.46) benign(0.217) TCGA-EE-A3AG-06 1 44595237 44595237 G A KLF17 Missense_Mutation p.M98I 0.72 tolerated(0.07) benign(0.001) TCGA-EE-A3AG-06 1 45288151 45288151 C T PTCH2 Nonsense_Mutation p.W1183* 0.16 TCGA-EE-A3AG-06 1 45295150 45295150 G A PTCH2 Missense_Mutation p.S380F 0.67 deleterious(0) benign(0.04) TCGA-EE-A3AG-06 1 45810872 45810872 G A TESK2 Silent p.R452R 0.73 TCGA-EE-A3AG-06 1 46876082 46876082 C T FAAH Silent p.F396F 0.20 TCGA-EE-A3AG-06 1 47280910 47280910 C T CYP4B1 Silent p.I349I 0.60 TCGA-EE-A3AG-06 1 47603142 47603142 C T CYP4A22 5'UTR 0.69 TCGA-EE-A3AG-06 1 47650768 47650768 C T PDZK1IP1 Missense_Mutation p.E60K 0.18 deleterious(0.01) benign(0.313) TCGA-EE-A3AG-06 1 52255268 52255268 C T NRD1 Missense_Mutation p.G1145E 0.59 deleterious(0.04) possibly_damaging(0.573) TCGA-EE-A3AG-06 1 53546448 53546448 C T PODN Missense_Mutation p.P569S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 54060392 54060392 G A GLIS1 Silent p.L62L 0.57 TCGA-EE-A3AG-06 1 54618546 54618546 C T CDCP2 Missense_Mutation p.G17D 0.57 deleterious(0.05) benign(0) TCGA-EE-A3AG-06 1 55158216 55158216 G A MROH7 Missense_Mutation p.G944E 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 1 55166006 55166006 G A MROH7 Missense_Mutation p.E993K 0.61 tolerated(0.12) benign(0.221) TCGA-EE-A3AG-06 1 57219538 57219538 C T C1orf168 Missense_Mutation p.E401K 0.54 deleterious(0.05) benign(0.164) TCGA-EE-A3AG-06 1 57425832 57425832 G A C8B Missense_Mutation p.S37F 0.17 tolerated(0.73) benign(0.004) TCGA-EE-A3AG-06 1 59147793 59147793 G A MYSM1 Missense_Mutation p.S308L 0.61 deleterious(0.04) benign(0.004) TCGA-EE-A3AG-06 1 62330101 62330101 G C INADL Missense_Mutation p.E877D 0.21 tolerated(0.14) benign(0.005) TCGA-EE-A3AG-06 1 62677026 62677026 G C L1TD1 Silent p.L860L 0.28 TCGA-EE-A3AG-06 1 63018492 63018492 G A DOCK7 Missense_Mutation p.R893C 0.23 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3AG-06 1 66036256 66036256 C T LEPR Silent p.F47F 0.65 TCGA-EE-A3AG-06 1 66081851 66081851 C T LEPR Missense_Mutation p.S719L 0.16 deleterious(0) probably_damaging(0.925) TCGA-EE-A3AG-06 1 66713166 66713166 C T PDE4B Missense_Mutation p.S102F 0.65 deleterious(0) probably_damaging(0.928) TCGA-EE-A3AG-06 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.23 tolerated(0.4) possibly_damaging(0.703) TCGA-EE-A3AG-06 1 75684175 75684175 C T SLC44A5 Missense_Mutation p.R510Q 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 1 77763292 77763292 G A AK5 Missense_Mutation p.R155Q 0.13 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 1 82409080 82409080 C T LPHN2 Silent p.V275V 0.67 TCGA-EE-A3AG-06 1 8425888 8425888 G A RERE Silent p.P477P 0.97 TCGA-EE-A3AG-06 1 86289269 86289269 C T COL24A1 Missense_Mutation p.E1247K 0.13 tolerated(0.14) benign(0.072) TCGA-EE-A3AG-06 1 92185599 92185599 G A TGFBR3 Missense_Mutation p.P422S 0.71 tolerated(0.2) benign(0.027) TCGA-EE-A3AG-06 1 92595247 92595247 C T BTBD8 Silent p.A222A 0.71 TCGA-EE-A3AG-06 1 9324630 9324630 T C H6PD Missense_Mutation p.M693T 0.91 tolerated(0.06) benign(0.06) TCGA-EE-A3AG-06 1 93683360 93683371 AGCCTTTGAAAA - CCDC18 In_Frame_Del p.F687_A690del 0.11 TCGA-EE-A3AG-06 1 94476459 94476459 G A ABCA4 Missense_Mutation p.H1871Y 0.59 deleterious(0.01) benign(0.233) TCGA-EE-A3AG-06 1 94487467 94487467 G A ABCA4 Missense_Mutation p.P1570S 0.69 tolerated(0.74) benign(0.001) TCGA-EE-A3AG-06 1 94650499 94650499 C T ARHGAP29 Missense_Mutation p.E680K 0.19 tolerated(0.2) probably_damaging(0.993) TCGA-EE-A3AG-06 1 94650500 94650500 C T ARHGAP29 Silent p.K679K 0.18 TCGA-EE-A3AG-06 1 94650528 94650528 C T ARHGAP29 Missense_Mutation p.G670E 0.68 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AG-06 1 97544465 97544465 C T DPYD 3'UTR 0.68 TCGA-EE-A3AG-06 1 981185 981185 C T AGRN Missense_Mutation p.P870L 0.77 deleterious(0.03) possibly_damaging(0.908) TCGA-EE-A3AG-06 20 138224 138224 G A DEFB127 Silent p.Q13Q 0.61 TCGA-EE-A3AG-06 20 21311265 21311265 C T XRN2 Silent p.F166F 0.15 TCGA-EE-A3AG-06 20 2375099 2375099 G A TGM6 Silent p.G3G 0.27 TCGA-EE-A3AG-06 20 30193906 30193906 C T ID1 3'UTR 0.46 TCGA-EE-A3AG-06 20 30617631 30617631 C T CCM2L 3'UTR 0.45 TCGA-EE-A3AG-06 20 31044121 31044121 C A C20orf112 Missense_Mutation p.D63Y 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-EE-A3AG-06 20 31699310 31699310 G A BPIFB4 3'UTR 0.15 TCGA-EE-A3AG-06 20 32349802 32349802 C T ZNF341 Missense_Mutation p.S381F 0.27 tolerated(0.06) probably_damaging(0.943) TCGA-EE-A3AG-06 20 3297413 3297413 G A C20orf194 Missense_Mutation p.S499F 0.29 tolerated(0.71) benign(0.001) TCGA-EE-A3AG-06 20 35422902 35422902 G A SOGA1 Missense_Mutation p.P1195S 0.23 tolerated(0.23) benign(0.007) TCGA-EE-A3AG-06 20 35444643 35444643 T G SOGA1 Missense_Mutation p.K401T 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 20 35507473 35507473 C T TLDC2 Silent p.T73T 0.22 TCGA-EE-A3AG-06 20 36468529 36468529 C T CTNNBL1 Silent p.S413S 0.59 TCGA-EE-A3AG-06 20 3655204 3655204 C T ADAM33 Missense_Mutation p.D183N 0.65 tolerated(0.35) benign(0.008) TCGA-EE-A3AG-06 20 36624820 36624820 G A TTI1 Missense_Mutation p.L1015F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 20 36641847 36641847 G A TTI1 Silent p.I124I 0.37 TCGA-EE-A3AG-06 20 3678723 3678723 C T SIGLEC1 Missense_Mutation p.G615E 0.42 tolerated_low_confidence(0.14) benign(0.181) TCGA-EE-A3AG-06 20 3678724 3678724 C T SIGLEC1 Missense_Mutation p.G615R 0.42 tolerated_low_confidence(0.13) benign(0.365) TCGA-EE-A3AG-06 20 37353485 37353485 G A SLC32A1 Missense_Mutation p.E40K 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A3AG-06 20 3765728 3765728 G A CENPB Missense_Mutation p.S468L 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3AG-06 20 3765730 3765730 G A CENPB Silent p.S467S 0.44 TCGA-EE-A3AG-06 20 3844958 3844958 C T MAVS Silent p.F227F 0.29 TCGA-EE-A3AG-06 20 39741563 39741563 A T TOP1 Nonsense_Mutation p.K484* 0.55 TCGA-EE-A3AG-06 20 40042110 40042110 G A CHD6 Missense_Mutation p.P2329S 0.52 tolerated(0.2) benign(0.021) TCGA-EE-A3AG-06 20 42162941 42162941 C T L3MBTL1 Silent p.F517F 0.26 TCGA-EE-A3AG-06 20 42162942 42162942 C T L3MBTL1 Silent p.L518L 0.26 TCGA-EE-A3AG-06 20 42199686 42199686 C T SGK2 Missense_Mutation p.L226F 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A3AG-06 20 43029991 43029991 C T HNF4A 5'UTR 0.31 TCGA-EE-A3AG-06 20 43058387 43058387 G A HNF4A 3'UTR 0.41 TCGA-EE-A3AG-06 20 44003783 44003783 C T TP53TG5 Missense_Mutation p.A222T 0.54 deleterious(0) possibly_damaging(0.496) TCGA-EE-A3AG-06 20 44313538 44313538 G A WFDC10B Silent p.F67F 0.59 TCGA-EE-A3AG-06 20 44333080 44333080 C T WFDC13 Intron 0.59 TCGA-EE-A3AG-06 20 44806775 44806775 G A CDH22 Silent p.F575F 0.28 TCGA-EE-A3AG-06 20 45130524 45130524 C T ZNF334 Missense_Mutation p.G485E 0.20 tolerated(0.1) benign(0.044) TCGA-EE-A3AG-06 20 45130722 45130722 G A ZNF334 Missense_Mutation p.A419V 0.30 tolerated(0.63) probably_damaging(0.977) TCGA-EE-A3AG-06 20 48522112 48522112 G A SPATA2 3'UTR 0.34 TCGA-EE-A3AG-06 20 49219013 49219013 C T FAM65C Missense_Mutation p.E415K 0.58 deleterious(0.04) possibly_damaging(0.646) TCGA-EE-A3AG-06 20 5154251 5154251 C T CDS2 Missense_Mutation p.S47F 0.58 deleterious(0.03) benign(0.001) TCGA-EE-A3AG-06 20 52789894 52789894 C T CYP24A1 Nonsense_Mutation p.W75* 0.35 TCGA-EE-A3AG-06 20 5282938 5282938 G A PROKR2 Silent p.F301F 0.69 TCGA-EE-A3AG-06 20 55111389 55111389 G A FAM209B Missense_Mutation p.M137I 0.55 deleterious(0.05) benign(0.004) TCGA-EE-A3AG-06 20 56735719 56735719 C T C20orf85 Silent p.V85V 0.27 TCGA-EE-A3AG-06 20 57829282 57829282 G A ZNF831 Silent p.Q1506Q 0.42 TCGA-EE-A3AG-06 20 57829283 57829283 G A ZNF831 Missense_Mutation p.E1507K 0.42 tolerated(0.58) benign(0.05) TCGA-EE-A3AG-06 20 60701392 60701392 C T LSM14B Silent p.F108F 0.35 TCGA-EE-A3AG-06 20 60838688 60838688 C T OSBPL2 Missense_Mutation p.P67S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 20 60887273 60887273 G A LAMA5 Missense_Mutation p.H3154Y 0.49 benign(0.024) TCGA-EE-A3AG-06 20 61511312 61511312 G A DIDO1 Missense_Mutation p.S1999F 0.58 benign(0.429) TCGA-EE-A3AG-06 20 61870912 61870912 C T BIRC7 Silent p.I284I 0.47 TCGA-EE-A3AG-06 20 61939414 61939414 C T COL20A1 Silent p.L249L 0.25 TCGA-EE-A3AG-06 20 62316898 62316898 C T RTEL1 Missense_Mutation p.S429F 0.32 tolerated(0.07) benign(0.364) TCGA-EE-A3AG-06 20 62407158 62407158 G C ZBTB46 Silent p.T365T 0.32 TCGA-EE-A3AG-06 20 62729457 62729457 C T OPRL1 Missense_Mutation p.S179F 0.21 tolerated(0.16) probably_damaging(1) TCGA-EE-A3AG-06 20 62737993 62737993 C G NPBWR2 Silent p.T64T 0.41 TCGA-EE-A3AG-06 20 62848472 62848472 C T MYT1 Missense_Mutation p.P562S 0.22 probably_damaging(1) TCGA-EE-A3AG-06 20 746275 746275 G A SLC52A3 Silent p.I48I 0.50 TCGA-EE-A3AG-06 21 15517024 15517024 G A LIPI Silent p.F426F 0.37 TCGA-EE-A3AG-06 21 26960092 26960092 G A MRPL39 Missense_Mutation p.P327S 0.34 deleterious_low_confidence(0.04) benign(0.016) TCGA-EE-A3AG-06 21 30949459 30949459 C A GRIK1 Missense_Mutation p.G652V 0.24 deleterious(0) probably_damaging(0.951) TCGA-EE-A3AG-06 21 31859583 31859583 C T KRTAP19-2 Missense_Mutation p.G29S 0.39 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A3AG-06 21 32253821 32253821 C T KRTAP11-1 Missense_Mutation p.R8K 0.39 tolerated(0.97) benign(0.063) TCGA-EE-A3AG-06 21 32582379 32582379 G A TIAM1 Silent p.T790T 0.55 TCGA-EE-A3AG-06 21 34018874 34018874 G A SYNJ1 Missense_Mutation p.L1065F 0.36 deleterious(0.03) benign(0.101) TCGA-EE-A3AG-06 21 34635104 34635104 C T IFNAR2 Missense_Mutation p.H283Y 0.41 tolerated(0.63) benign(0.003) TCGA-EE-A3AG-06 21 34897104 34897104 G A GART Missense_Mutation p.R424C 0.62 deleterious(0) probably_damaging(0.91) TCGA-EE-A3AG-06 21 37660349 37660349 C T DOPEY2 Silent p.S2066S 0.42 TCGA-EE-A3AG-06 21 39426917 39426917 C T DSCR4 3'UTR 0.43 TCGA-EE-A3AG-06 21 39427000 39427000 C T DSCR4 Silent p.K102K 0.47 TCGA-EE-A3AG-06 21 40823881 40823881 G A SH3BGR Silent p.R16R 0.38 TCGA-EE-A3AG-06 21 41684257 41684257 G A DSCAM Missense_Mutation p.P605S 0.41 deleterious(0.01) possibly_damaging(0.555) TCGA-EE-A3AG-06 21 43852251 43852251 G A UBASH3A Missense_Mutation p.G404R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 21 43852252 43852252 G A UBASH3A Missense_Mutation p.G404E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 21 44188352 44188352 G A PDE9A Missense_Mutation p.E471K 0.55 tolerated(0.06) benign(0.07) TCGA-EE-A3AG-06 21 44839251 44839251 G A SIK1 Silent p.L409L 0.48 TCGA-EE-A3AG-06 21 45786723 45786723 G A TRPM2 Silent p.L170L 0.43 TCGA-EE-A3AG-06 21 45821720 45821720 C T TRPM2 Silent p.S826S 0.42 TCGA-EE-A3AG-06 21 45837819 45837819 C T TRPM2 Silent p.F1052F 0.35 TCGA-EE-A3AG-06 21 46074180 46074180 G A KRTAP12-4 3'UTR 0.45 TCGA-EE-A3AG-06 21 46951972 46951972 G A SLC19A1 Missense_Mutation p.P94S 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A3AG-06 21 47679005 47679005 C A MCM3AP Missense_Mutation p.K1194N 0.50 deleterious(0.01) benign(0.205) TCGA-EE-A3AG-06 21 47969774 47969774 C T DIP2A Silent p.F871F 0.53 TCGA-EE-A3AG-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.17 TCGA-EE-A3AG-06 22 17288923 17288923 C T XKR3 Missense_Mutation p.G14E 0.25 tolerated(0.12) probably_damaging(0.972) TCGA-EE-A3AG-06 22 18561251 18561251 C T PEX26 Missense_Mutation p.L37F 0.38 deleterious(0) possibly_damaging(0.908) TCGA-EE-A3AG-06 22 18844923 18844923 C T BCRP7 RNA 0.35 TCGA-EE-A3AG-06 22 19052576 19052576 G A DGCR2 Silent p.F111F 0.19 TCGA-EE-A3AG-06 22 19789715 19789715 G A GNB1L Missense_Mutation p.L181F 0.30 deleterious(0.05) possibly_damaging(0.814) TCGA-EE-A3AG-06 22 19839296 19839296 G A C22orf29 Silent p.P163P 0.35 TCGA-EE-A3AG-06 22 19839297 19839297 G A C22orf29 Missense_Mutation p.P163L 0.35 tolerated(0.06) probably_damaging(0.924) TCGA-EE-A3AG-06 22 20094149 20094149 G C DGCR8 Missense_Mutation p.E642Q 0.35 tolerated(0.1) benign(0.314) TCGA-EE-A3AG-06 22 20760622 20760622 C T ZNF74 Silent p.L433L 0.33 TCGA-EE-A3AG-06 22 21800468 21800468 G A HIC2 Silent p.R428R 0.22 TCGA-EE-A3AG-06 22 22931119 22931119 C T IGLV2-33 Missense_Mutation p.A105V 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-EE-A3AG-06 22 23214005 23214005 G A IGLV4-3 Nonsense_Mutation p.W54* 0.43 TCGA-EE-A3AG-06 22 23235906 23235906 G A IGLL5 Missense_Mutation p.R78K 0.56 tolerated_low_confidence(1) benign(0.031) TCGA-EE-A3AG-06 22 23237931 23237931 G A IGLL5 3'UTR 0.45 TCGA-EE-A3AG-06 22 23264834 23264834 G A IGLC7 Missense_Mutation p.A24T 0.36 deleterious_low_confidence(0) benign(0.197) TCGA-EE-A3AG-06 22 24573578 24573578 C T CABIN1 Silent p.P2104P 0.57 TCGA-EE-A3AG-06 22 25019187 25019187 G A GGT1 Missense_Mutation p.G283R 0.65 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AG-06 22 25280142 25280142 G A SGSM1 Missense_Mutation p.E595K 0.32 tolerated(0.24) benign(0.011) TCGA-EE-A3AG-06 22 25753393 25753393 G A LRP5L Silent p.G89G 0.29 TCGA-EE-A3AG-06 22 25755850 25755850 G A LRP5L Silent p.I70I 0.33 TCGA-EE-A3AG-06 22 26423593 26423593 G A MYO18B Silent p.G2551G 0.45 TCGA-EE-A3AG-06 22 26951283 26951283 G A TPST2 Intron 0.35 TCGA-EE-A3AG-06 22 29139939 29139939 C T HSCB Silent p.H102H 0.30 TCGA-EE-A3AG-06 22 29139940 29139940 C T HSCB Missense_Mutation p.P103S 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 22 29533461 29533461 C T KREMEN1 Missense_Mutation p.H255Y 0.54 tolerated(0.83) benign(0.008) TCGA-EE-A3AG-06 22 30722746 30722746 C T TBC1D10A Missense_Mutation p.G42E 0.29 deleterious(0) benign(0.133) TCGA-EE-A3AG-06 22 30867904 30867904 C T SEC14L3 Silent p.E14E 0.43 TCGA-EE-A3AG-06 22 31091279 31091279 C T OSBP2 Missense_Mutation p.S128F 0.48 deleterious_low_confidence(0.01) benign(0.04) TCGA-EE-A3AG-06 22 31091280 31091280 C T OSBP2 Silent p.S128S 0.48 TCGA-EE-A3AG-06 22 32894166 32894166 C T FBXO7 Silent p.S406S 0.18 TCGA-EE-A3AG-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 22 36116701 36116701 C T APOL5 Missense_Mutation p.P48S 0.45 tolerated(0.74) benign(0.018) TCGA-EE-A3AG-06 22 36653381 36653381 C T APOL1 Missense_Mutation p.P55S 0.43 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AG-06 22 36912528 36912528 G A EIF3D Silent p.S401S 0.37 TCGA-EE-A3AG-06 22 37333949 37333949 G A CSF2RB Missense_Mutation p.G700E 0.46 tolerated(0.08) benign(0.152) TCGA-EE-A3AG-06 22 37420607 37420607 C T MPST Silent p.F137F 0.48 TCGA-EE-A3AG-06 22 37485790 37485790 G A TMPRSS6 Nonsense_Mutation p.Q231* 0.51 TCGA-EE-A3AG-06 22 37532325 37532325 C T IL2RB Missense_Mutation p.E216K 0.48 tolerated(0.79) benign(0.001) TCGA-EE-A3AG-06 22 37603068 37603068 C T SSTR3 Missense_Mutation p.V259M 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 22 37603069 37603069 C T SSTR3 Missense_Mutation p.M258I 0.54 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 22 37709579 37709579 G A CYTH4 3'UTR 0.45 TCGA-EE-A3AG-06 22 37888516 37888516 C T CARD10 Missense_Mutation p.G893R 0.29 tolerated(0.34) benign(0.031) TCGA-EE-A3AG-06 22 38130867 38130867 G A TRIOBP Silent p.K1508K 0.57 TCGA-EE-A3AG-06 22 38370151 38370151 G A SOX10 Missense_Mutation p.S251L 0.38 tolerated(0.28) benign(0.019) TCGA-EE-A3AG-06 22 38370153 38370153 C A SOX10 Missense_Mutation p.Q250H 0.37 tolerated(0.59) benign(0.028) TCGA-EE-A3AG-06 22 39421256 39421256 C T APOBEC3D Missense_Mutation p.S131F 0.37 tolerated(1) benign(0.065) TCGA-EE-A3AG-06 22 39427956 39427956 C T APOBEC3D Silent p.S340S 0.53 TCGA-EE-A3AG-06 22 39771966 39771966 C T SYNGR1 Intron 0.40 TCGA-EE-A3AG-06 22 39910376 39910376 C T MIEF1 3'UTR 0.39 TCGA-EE-A3AG-06 22 39917406 39917406 C T ATF4 5'UTR 0.38 TCGA-EE-A3AG-06 22 41739503 41739503 C T ZC3H7B Missense_Mutation p.S461L 0.48 tolerated(0.07) benign(0.024) TCGA-EE-A3AG-06 22 42003275 42003275 G A DESI1 Silent p.S57S 0.57 TCGA-EE-A3AG-06 22 42141933 42141933 C T MEI1 Missense_Mutation p.P528L 0.44 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A3AG-06 22 42522546 42522546 G A CYP2D6 3'UTR 0.36 TCGA-EE-A3AG-06 22 46594462 46594462 C T PPARA Missense_Mutation p.P61L 0.50 deleterious_low_confidence(0.01) benign(0.06) TCGA-EE-A3AG-06 22 46653000 46653000 C T PKDREJ Missense_Mutation p.D2074N 0.42 tolerated(0.15) possibly_damaging(0.67) TCGA-EE-A3AG-06 22 50506907 50506907 G A MLC1 Silent p.I283I 0.52 TCGA-EE-A3AG-06 22 50705058 50705058 G A MAPK11 Intron 0.47 TCGA-EE-A3AG-06 2 100906787 100906787 C A LONRF2 Missense_Mutation p.R618L 0.41 deleterious(0) benign(0.41) TCGA-EE-A3AG-06 2 102958747 102958747 G A IL1RL1 Silent p.V225V 0.41 TCGA-EE-A3AG-06 2 103001405 103001405 G A IL18R1 Silent p.G252G 0.44 TCGA-EE-A3AG-06 2 106690397 106690397 C T C2orf40 Silent p.F61F 0.45 TCGA-EE-A3AG-06 2 108507182 108507182 G A RGPD4 Missense_Mutation p.E1758K 0.42 deleterious_low_confidence(0) benign(0.292) TCGA-EE-A3AG-06 2 108604612 108604612 A G SLC5A7 Translation_Start_Site p.M1? 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AG-06 2 1094073 1094073 C T SNTG2 Missense_Mutation p.S101L 0.30 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AG-06 2 109547483 109547483 G A EDAR 5'UTR 0.44 TCGA-EE-A3AG-06 2 110849340 110849340 C T MALL Missense_Mutation p.G38E 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-EE-A3AG-06 2 112922660 112922660 C T FBLN7 Silent p.T106T 0.40 TCGA-EE-A3AG-06 2 113127769 113127769 G A RGPD8 Missense_Mutation p.R1762C 0.40 deleterious_low_confidence(0) benign(0.025) TCGA-EE-A3AG-06 2 113127770 113127770 G A RGPD8 Silent p.S1761S 0.40 TCGA-EE-A3AG-06 2 113786584 113786584 C T IL36B Missense_Mutation p.G65R 0.46 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3AG-06 2 113943598 113943598 C T PSD4 Missense_Mutation p.S465F 0.44 deleterious_low_confidence(0.03) benign(0.132) TCGA-EE-A3AG-06 2 1168827 1168827 C T SNTG2 Silent p.L183L 0.56 TCGA-EE-A3AG-06 2 1168853 1168853 G A SNTG2 Missense_Mutation p.G192E 0.30 tolerated(0.1) probably_damaging(0.935) TCGA-EE-A3AG-06 2 11802346 11802346 G A NTSR2 Silent p.F215F 0.59 TCGA-EE-A3AG-06 2 119699879 119699879 G A MARCO Translation_Start_Site p.M1? 0.50 deleterious(0.01) benign(0.005) TCGA-EE-A3AG-06 2 120252038 120252038 C T SCTR Silent p.Q53Q 0.40 TCGA-EE-A3AG-06 2 128774043 128774043 G A SAP130 Missense_Mutation p.P169S 0.49 tolerated_low_confidence(0.16) possibly_damaging(0.776) TCGA-EE-A3AG-06 2 130911935 130911935 G A SMPD4 Missense_Mutation p.S564F 0.40 deleterious(0.01) probably_damaging(0.919) TCGA-EE-A3AG-06 2 131519766 131519766 C T AMER3 Missense_Mutation p.P41S 0.33 tolerated(0.73) benign(0.004) TCGA-EE-A3AG-06 2 131520787 131520787 C T AMER3 Missense_Mutation p.S381F 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 2 131897829 131897829 C T PLEKHB2 Silent p.P179P 0.53 TCGA-EE-A3AG-06 2 131976308 131976308 G A POTEE Silent p.G111G 0.42 TCGA-EE-A3AG-06 2 132288190 132288190 C T CCDC74A Missense_Mutation p.P112S 0.37 tolerated(0.88) benign(0.006) TCGA-EE-A3AG-06 2 133489581 133489581 G A NCKAP5 Silent p.T1724T 0.42 TCGA-EE-A3AG-06 2 133751795 133751795 C T NCKAP5 Missense_Mutation p.R120Q 0.24 deleterious(0) possibly_damaging(0.876) TCGA-EE-A3AG-06 2 135740892 135740892 G A MAP3K19 Intron 0.45 TCGA-EE-A3AG-06 2 136566074 136566074 C T LCT Silent p.P1281P 0.36 TCGA-EE-A3AG-06 2 137814319 137814319 G A THSD7B Missense_Mutation p.E157K 0.43 tolerated(0.52) benign(0.316) TCGA-EE-A3AG-06 2 137814638 137814638 G A THSD7B Missense_Mutation p.G263E 0.40 tolerated(0.12) probably_damaging(0.998) TCGA-EE-A3AG-06 2 137917850 137917850 C T THSD7B Silent p.I479I 0.36 TCGA-EE-A3AG-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.45 deleterious(0.02) unknown(0) TCGA-EE-A3AG-06 2 141709478 141709478 G A LRP1B Silent p.F973F 0.34 TCGA-EE-A3AG-06 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.35 possibly_damaging(0.553) TCGA-EE-A3AG-06 2 141986947 141986947 G A LRP1B Missense_Mutation p.L219F 0.50 possibly_damaging(0.587) TCGA-EE-A3AG-06 2 1488382 1488382 G A TPO Silent p.R451R 0.24 TCGA-EE-A3AG-06 2 149226928 149226928 C T MBD5 Silent p.F472F 0.48 TCGA-EE-A3AG-06 2 149243398 149243398 C T MBD5 Missense_Mutation p.P978L 0.46 deleterious_low_confidence(0.05) unknown(0) TCGA-EE-A3AG-06 2 152522714 152522714 G A NEB Nonsense_Mutation p.Q1641* 0.45 TCGA-EE-A3AG-06 2 15307360 15307360 G A NBAS Missense_Mutation p.P2310S 0.80 deleterious(0.02) possibly_damaging(0.664) TCGA-EE-A3AG-06 2 154801055 154801055 G A GALNT13 Silent p.L15L 0.48 TCGA-EE-A3AG-06 2 155711711 155711711 C T KCNJ3 Silent p.S464S 0.54 TCGA-EE-A3AG-06 2 158283904 158283904 G A CYTIP Silent p.L169L 0.47 TCGA-EE-A3AG-06 2 162821560 162821560 G A SLC4A10 Splice_Site p.X1013_splice 0.31 TCGA-EE-A3AG-06 2 162865131 162865131 C T DPP4 Missense_Mutation p.G643E 0.45 deleterious(0) probably_damaging(0.992) TCGA-EE-A3AG-06 2 163139026 163139026 G A IFIH1 Missense_Mutation p.R386C 0.43 tolerated(0.08) benign(0.026) TCGA-EE-A3AG-06 2 163374525 163374525 G A KCNH7 Missense_Mutation p.P203S 0.37 tolerated(0.14) benign(0.17) TCGA-EE-A3AG-06 2 1652195 1652195 C T PXDN Silent p.R1119R 0.32 TCGA-EE-A3AG-06 2 166848475 166848475 G A SCN1A Silent p.I1770I 0.43 TCGA-EE-A3AG-06 2 166901655 166901655 G A SCN1A Silent p.F520F 0.43 TCGA-EE-A3AG-06 2 168102710 168102710 C T XIRP2 Missense_Mutation p.A1603V 0.58 benign(0.005) TCGA-EE-A3AG-06 2 168107796 168107796 G A XIRP2 Silent p.K3298K 0.38 TCGA-EE-A3AG-06 2 169780212 169780212 C T ABCB11 Missense_Mutation p.E1296K 0.55 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AG-06 2 178592780 178592780 C T PDE11A Missense_Mutation p.V637I 0.27 tolerated(0.36) benign(0.347) TCGA-EE-A3AG-06 2 179427361 179427361 C T TTN Missense_Mutation p.G27833E 0.40 TCGA-EE-A3AG-06 2 179428361 179428361 C T TTN Missense_Mutation p.E27500K 0.40 TCGA-EE-A3AG-06 2 179467247 179467247 T G TTN Missense_Mutation p.K18294N 0.19 TCGA-EE-A3AG-06 2 179590525 179590525 C T TTN Missense_Mutation p.D6842N 0.33 TCGA-EE-A3AG-06 2 179603052 179603052 C T TTN Missense_Mutation p.E4710K 0.61 TCGA-EE-A3AG-06 2 179615186 179615186 C T TTN Intron 0.36 TCGA-EE-A3AG-06 2 179648923 179648923 G A TTN Silent p.F883F 0.43 TCGA-EE-A3AG-06 2 180041227 180041227 T G SESTD1 Missense_Mutation p.D68A 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 2 182363425 182363425 G A ITGA4 Missense_Mutation p.G539E 0.54 deleterious(0.04) probably_damaging(0.951) TCGA-EE-A3AG-06 2 182392056 182392056 C T ITGA4 Missense_Mutation p.S791L 0.47 tolerated(0.1) benign(0.243) TCGA-EE-A3AG-06 2 182783380 182783380 C T SSFA2 Missense_Mutation p.S948L 0.31 tolerated(0.08) benign(0.036) TCGA-EE-A3AG-06 2 183095838 183095838 G A PDE1A Silent p.F162F 0.38 TCGA-EE-A3AG-06 2 183723556 183723556 G A FRZB Missense_Mutation p.P162S 0.43 tolerated(0.11) benign(0.007) TCGA-EE-A3AG-06 2 186673333 186673333 G A FSIP2 Missense_Mutation p.G6523R 0.54 probably_damaging(1) TCGA-EE-A3AG-06 2 1893050 1893050 G A MYT1L Missense_Mutation p.P826L 0.26 tolerated(0.28) benign(0.205) TCGA-EE-A3AG-06 2 189873725 189873725 G A COL3A1 Missense_Mutation p.G1201R 0.50 unknown(0) TCGA-EE-A3AG-06 2 189931166 189931166 G A COL5A2 Missense_Mutation p.P505S 0.51 probably_damaging(0.986) TCGA-EE-A3AG-06 2 1906908 1906908 C T MYT1L Missense_Mutation p.R657Q 0.54 tolerated(0.08) possibly_damaging(0.852) TCGA-EE-A3AG-06 2 192012914 192012914 G A STAT4 Nonsense_Mutation p.Q6* 0.34 TCGA-EE-A3AG-06 2 1926499 1926499 C T MYT1L Missense_Mutation p.E348K 0.58 deleterious_low_confidence(0.02) benign(0.397) TCGA-EE-A3AG-06 2 192700920 192700920 C T SDPR Missense_Mutation p.G336D 0.46 tolerated(0.6) benign(0.009) TCGA-EE-A3AG-06 2 196774785 196774785 C T DNAH7 Missense_Mutation p.G1357E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 2 196822153 196822153 G A DNAH7 Silent p.L970L 0.50 TCGA-EE-A3AG-06 2 198948707 198948707 G A PLCL1 Missense_Mutation p.A156T 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 2 198950799 198950799 G A PLCL1 Missense_Mutation p.G853E 0.47 deleterious(0) possibly_damaging(0.795) TCGA-EE-A3AG-06 2 201436643 201436643 C T SGOL2 Missense_Mutation p.S525F 0.55 tolerated(0.13) possibly_damaging(0.551) TCGA-EE-A3AG-06 2 201473810 201473810 C T AOX1 Silent p.L337L 0.52 TCGA-EE-A3AG-06 2 201507454 201507454 C T AOX1 Missense_Mutation p.P926L 0.57 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 2 201718127 201718127 G T CLK1 Missense_Mutation p.L495I 0.55 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A3AG-06 2 201950311 201950311 C T NDUFB3 Silent p.S90S 0.54 TCGA-EE-A3AG-06 2 202082563 202082563 C T CASP10 3'UTR 0.36 TCGA-EE-A3AG-06 2 202093958 202093958 C T CASP10 3'UTR 0.67 TCGA-EE-A3AG-06 2 202137459 202137459 C A CASP8 Missense_Mutation p.S229R 0.16 tolerated(0.07) benign(0.099) TCGA-EE-A3AG-06 2 203130537 203130537 G A NOP58 5'UTR 0.58 TCGA-EE-A3AG-06 2 207171024 207171024 C T ZDBF2 Missense_Mutation p.S591L 0.39 tolerated(0.07) possibly_damaging(0.693) TCGA-EE-A3AG-06 2 207171067 207171067 G A ZDBF2 Silent p.L605L 0.45 TCGA-EE-A3AG-06 2 207509180 207509180 G A AC010731.4 RNA 0.57 TCGA-EE-A3AG-06 2 20840835 20840835 C T HS1BP3 Missense_Mutation p.E102K 0.31 deleterious(0.01) possibly_damaging(0.869) TCGA-EE-A3AG-06 2 210595033 210595033 C T MAP2 Missense_Mutation p.S1799L 0.44 deleterious(0) probably_damaging(0.985) TCGA-EE-A3AG-06 2 210962892 210962892 G A KANSL1L Missense_Mutation p.P490S 0.19 deleterious(0) probably_damaging(0.966) TCGA-EE-A3AG-06 2 21227176 21227176 C T APOB Missense_Mutation p.D4018N 0.62 benign(0.001) TCGA-EE-A3AG-06 2 21231540 21231540 G A APOB Missense_Mutation p.P2734S 0.59 probably_damaging(0.996) TCGA-EE-A3AG-06 2 21233797 21233797 C T APOB Nonsense_Mutation p.W1981* 0.61 TCGA-EE-A3AG-06 2 216251457 216251457 T A FN1 Missense_Mutation p.N1523Y 0.31 tolerated(0.35) benign(0.011) TCGA-EE-A3AG-06 2 219346947 219346947 G A USP37 Missense_Mutation p.L561F 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A3AG-06 2 219561263 219561263 C T STK36 Missense_Mutation p.P842L 0.56 tolerated(0.31) benign(0.013) TCGA-EE-A3AG-06 2 220089007 220089007 G A ATG9A Silent p.S362S 0.32 TCGA-EE-A3AG-06 2 220354580 220354580 G A SPEG Missense_Mutation p.R2947Q 0.61 benign(0.012) TCGA-EE-A3AG-06 2 220406679 220406679 G A CHPF Missense_Mutation p.H183Y 0.46 tolerated(1) benign(0.003) TCGA-EE-A3AG-06 2 222436924 222436924 C T EPHA4 Silent p.G15G 0.30 TCGA-EE-A3AG-06 2 225360606 225360606 G A CUL3 Silent p.S595S 0.55 TCGA-EE-A3AG-06 2 230902218 230902218 C T SLC16A14 Missense_Mutation p.D471N 0.42 tolerated(0.07) probably_damaging(0.978) TCGA-EE-A3AG-06 2 230911275 230911275 C T SLC16A14 Silent p.R189R 0.40 TCGA-EE-A3AG-06 2 231314285 231314285 C T SP100 Missense_Mutation p.P199L 0.35 tolerated(0.68) possibly_damaging(0.851) TCGA-EE-A3AG-06 2 232389986 232389986 G A NMUR1 Missense_Mutation p.A350V 0.46 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A3AG-06 2 232393679 232393679 C T NMUR1 Missense_Mutation p.G18E 0.46 tolerated(1) benign(0.004) TCGA-EE-A3AG-06 2 233346557 233346557 G A ECEL1 Missense_Mutation p.S600F 0.29 deleterious(0) possibly_damaging(0.503) TCGA-EE-A3AG-06 2 233839559 233839559 C T NGEF Silent p.R14R 0.47 TCGA-EE-A3AG-06 2 234580754 234580754 C T UGT1A9 Silent p.V58V 0.49 TCGA-EE-A3AG-06 2 235950772 235950772 C T SH3BP4 Silent p.V453V 0.19 TCGA-EE-A3AG-06 2 236708057 236708057 C T AGAP1 Missense_Mutation p.P283L 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 2 237074669 237074669 G A GBX2 Missense_Mutation p.S312F 0.58 deleterious(0) possibly_damaging(0.768) TCGA-EE-A3AG-06 2 238275834 238275834 C T COL6A3 Missense_Mutation p.V1666M 0.26 probably_damaging(0.959) TCGA-EE-A3AG-06 2 239186556 239186556 G A PER2 Missense_Mutation p.P8S 0.28 tolerated_low_confidence(0.24) benign(0.007) TCGA-EE-A3AG-06 2 241621907 241621907 C T AQP12B Silent p.A116A 0.70 TCGA-EE-A3AG-06 2 241826526 241826526 G A C2orf54 Silent p.I435I 0.58 TCGA-EE-A3AG-06 2 24952581 24952581 C T NCOA1 Missense_Mutation p.S1033L 0.20 tolerated(0.06) benign(0.081) TCGA-EE-A3AG-06 2 25141596 25141596 G A ADCY3 Silent p.L87L 0.66 TCGA-EE-A3AG-06 2 25462016 25462016 G A DNMT3A Silent p.N797N 0.58 TCGA-EE-A3AG-06 2 26702507 26702507 C T OTOF Missense_Mutation p.E643K 0.20 tolerated(0.84) benign(0.001) TCGA-EE-A3AG-06 2 27360020 27360020 G A C2orf53 Missense_Mutation p.P393L 0.55 tolerated(0.18) benign(0.011) TCGA-EE-A3AG-06 2 27360021 27360021 G A C2orf53 Missense_Mutation p.P393S 0.55 tolerated(0.11) benign(0.178) TCGA-EE-A3AG-06 2 27746331 27746331 G A GCKR 3'UTR 0.21 TCGA-EE-A3AG-06 2 27746332 27746332 G A GCKR 3'UTR 0.21 TCGA-EE-A3AG-06 2 27803388 27803388 G A C2orf16 Missense_Mutation p.E1317K 0.31 tolerated(0.08) benign(0) TCGA-EE-A3AG-06 2 28004450 28004450 C T RBKS 3'UTR 0.64 TCGA-EE-A3AG-06 2 31587102 31587102 G A XDH Silent p.F851F 0.36 TCGA-EE-A3AG-06 2 33468816 33468816 G A LTBP1 Missense_Mutation p.G655E 0.64 deleterious(0) probably_damaging(0.973) TCGA-EE-A3AG-06 2 39029995 39029995 G A DHX57 Silent p.F1293F 0.59 TCGA-EE-A3AG-06 2 39944248 39944248 G A TMEM178A Missense_Mutation p.E251K 0.30 tolerated(0.09) benign(0.252) TCGA-EE-A3AG-06 2 40656542 40656542 C T SLC8A1 Silent p.G293G 0.55 TCGA-EE-A3AG-06 2 48809238 48809238 A T STON1-GTF2A1L Missense_Mutation p.K489M 0.24 deleterious(0) probably_damaging(0.909) TCGA-EE-A3AG-06 2 56098174 56098174 C T EFEMP1 Missense_Mutation p.R362Q 0.57 tolerated(0.16) benign(0.004) TCGA-EE-A3AG-06 2 65543943 65543943 G A SPRED2 Silent p.S171S 0.41 TCGA-EE-A3AG-06 2 669593 669593 C T TMEM18 Missense_Mutation p.R137K 0.78 tolerated(1) unknown(0) TCGA-EE-A3AG-06 2 68384750 68384750 G A WDR92 5'Flank 0.42 TCGA-EE-A3AG-06 2 68872977 68872977 G A PROKR1 Missense_Mutation p.M8I 0.40 tolerated_low_confidence(0.47) benign(0) TCGA-EE-A3AG-06 2 69708047 69708047 G A AAK1 Silent p.P838P 0.42 TCGA-EE-A3AG-06 2 70314983 70314983 T C PCBP1 Silent p.V36V 0.43 TCGA-EE-A3AG-06 2 70933562 70933562 C T ADD2 5'UTR 0.53 TCGA-EE-A3AG-06 2 71913630 71913630 C T DYSF 3'UTR 0.51 TCGA-EE-A3AG-06 2 73160970 73160970 G A EMX1 Missense_Mutation p.E254K 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A3AG-06 2 73474974 73474974 C T CCT7 Missense_Mutation p.P235S 0.49 deleterious(0) benign(0.307) TCGA-EE-A3AG-06 2 73518712 73518712 C T EGR4 Missense_Mutation p.R548H 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 2 74492337 74492337 G A SLC4A5 Silent p.P152P 0.38 TCGA-EE-A3AG-06 2 74803660 74803660 G A M1AP Silent p.D285D 0.48 TCGA-EE-A3AG-06 2 77745953 77745953 C T LRRTM4 Missense_Mutation p.E348K 0.35 deleterious(0) probably_damaging(0.993) TCGA-EE-A3AG-06 2 79254218 79254218 G A REG3G Missense_Mutation p.G85E 0.50 deleterious(0.02) possibly_damaging(0.493) TCGA-EE-A3AG-06 2 79349251 79349251 G T REG1A Missense_Mutation p.K107N 0.42 tolerated(0.44) possibly_damaging(0.894) TCGA-EE-A3AG-06 2 86272890 86272890 G A POLR1A Silent p.I912I 0.46 TCGA-EE-A3AG-06 2 86831597 86831597 A T RNF103 Missense_Mutation p.F476Y 0.47 tolerated(0.43) benign(0.036) TCGA-EE-A3AG-06 2 87141002 87141002 G A RGPD1 5'Flank 0.11 TCGA-EE-A3AG-06 2 89278134 89278134 G A IGKV3-7 Silent p.L67L 0.38 TCGA-EE-A3AG-06 2 90109020 90109020 C T IGKV6D-41 Silent p.I95I 0.52 TCGA-EE-A3AG-06 2 90193342 90193342 G A IGKV1D-13 Missense_Mutation p.G90E 0.30 deleterious(0.02) possibly_damaging(0.529) TCGA-EE-A3AG-06 2 90193343 90193343 G A IGKV1D-13 Silent p.G90G 0.30 TCGA-EE-A3AG-06 2 9621462 9621462 C T IAH1 Silent p.L111L 0.58 TCGA-EE-A3AG-06 2 97217808 97217808 C T ARID5A Missense_Mutation p.P515S 0.60 tolerated(0.81) benign(0.002) TCGA-EE-A3AG-06 2 98409346 98409346 G A TMEM131 Missense_Mutation p.P1216L 0.32 tolerated_low_confidence(0.15) benign(0.001) TCGA-EE-A3AG-06 2 98709692 98709692 A G VWA3B Missense_Mutation p.K46R 0.47 deleterious(0.03) possibly_damaging(0.742) TCGA-EE-A3AG-06 2 98928305 98928305 C T VWA3B Missense_Mutation p.S1182F 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-EE-A3AG-06 2 99013442 99013442 G A CNGA3 Silent p.R603R 0.53 TCGA-EE-A3AG-06 3 10136910 10136910 C T FANCD2 Silent p.T1330T 0.39 TCGA-EE-A3AG-06 3 10191547 10191547 C T VHL Silent p.I180I 0.25 TCGA-EE-A3AG-06 3 10311961 10311961 C T TATDN2 Silent p.T365T 0.53 TCGA-EE-A3AG-06 3 10452327 10452327 G A ATP2B2 Silent p.Y124Y 0.27 TCGA-EE-A3AG-06 3 108072538 108072538 G A HHLA2 Missense_Mutation p.R110K 0.54 tolerated(0.09) benign(0.18) TCGA-EE-A3AG-06 3 108474705 108474705 C T RETNLB Missense_Mutation p.D86N 0.45 tolerated(0.16) possibly_damaging(0.454) TCGA-EE-A3AG-06 3 108698393 108698393 C T MORC1 Missense_Mutation p.E816K 0.48 tolerated(0.14) benign(0.098) TCGA-EE-A3AG-06 3 108705748 108705748 C T MORC1 Missense_Mutation p.E746K 0.26 deleterious(0.05) benign(0.068) TCGA-EE-A3AG-06 3 108751625 108751625 C T MORC1 Missense_Mutation p.E503K 0.51 tolerated(0.19) benign(0.018) TCGA-EE-A3AG-06 3 108813765 108813765 C T MORC1 Missense_Mutation p.G192R 0.49 deleterious(0.03) possibly_damaging(0.487) TCGA-EE-A3AG-06 3 113376574 113376574 G A KIAA2018 Missense_Mutation p.P1319S 0.47 benign(0.004) TCGA-EE-A3AG-06 3 11350518 11350518 C T ATG7 Missense_Mutation p.L132F 0.57 deleterious(0.04) benign(0.003) TCGA-EE-A3AG-06 3 113753875 113753875 C T KIAA1407 Missense_Mutation p.A239T 0.45 deleterious(0) possibly_damaging(0.877) TCGA-EE-A3AG-06 3 119306799 119306799 C T ADPRH 3'UTR 0.36 TCGA-EE-A3AG-06 3 119434558 119434558 C T MAATS1 Missense_Mutation p.P217L 0.55 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AG-06 3 120123744 120123744 G A FSTL1 Silent p.I179I 0.34 TCGA-EE-A3AG-06 3 120424922 120424922 G A RABL3 Missense_Mutation p.S103F 0.48 tolerated(0.7) possibly_damaging(0.627) TCGA-EE-A3AG-06 3 120469389 120469389 C T GTF2E1 5'UTR 0.39 TCGA-EE-A3AG-06 3 120941855 120941855 C T STXBP5L Missense_Mutation p.P321L 0.31 deleterious(0.03) possibly_damaging(0.904) TCGA-EE-A3AG-06 3 120976108 120976108 C T STXBP5L Missense_Mutation p.S587L 0.45 tolerated(0.32) benign(0.001) TCGA-EE-A3AG-06 3 121207488 121207489 - A POLQ Frame_Shift_Ins p.L1430Ffs*5 0.12 TCGA-EE-A3AG-06 3 12195891 12195891 T C TIMP4 Missense_Mutation p.E138G 0.19 deleterious(0.04) possibly_damaging(0.699) TCGA-EE-A3AG-06 3 12195893 12195893 C G TIMP4 Missense_Mutation p.W137C 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 3 12195894 12195894 C T TIMP4 Nonsense_Mutation p.W137* 0.21 TCGA-EE-A3AG-06 3 122667507 122667507 G A SEMA5B Silent p.I112I 0.33 TCGA-EE-A3AG-06 3 123419583 123419583 G A MYLK Missense_Mutation p.S911L 0.58 deleterious(0.05) benign(0.021) TCGA-EE-A3AG-06 3 124416491 124416491 C T AC080008.1 5'Flank 0.38 TCGA-EE-A3AG-06 3 124416492 124416492 C T AC080008.1 5'Flank 0.40 TCGA-EE-A3AG-06 3 124906250 124906250 C A SLC12A8 Missense_Mutation p.G74V 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 3 124906251 124906251 C T SLC12A8 Missense_Mutation p.G74S 0.48 tolerated(0.26) probably_damaging(0.997) TCGA-EE-A3AG-06 3 125844543 125844543 G A ALDH1L1 Silent p.P582P 0.42 TCGA-EE-A3AG-06 3 12616298 12616298 T A MKRN2 Missense_Mutation p.M217K 0.55 deleterious(0) probably_damaging(0.943) TCGA-EE-A3AG-06 3 127294631 127294631 G A TPRA1 Missense_Mutation p.L211F 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 3 127980974 127980974 C T EEFSEC Silent p.F176F 0.40 TCGA-EE-A3AG-06 3 128060522 128060522 G A EEFSEC Nonsense_Mutation p.W411* 0.47 TCGA-EE-A3AG-06 3 128780669 128780669 G A GP9 Silent p.L29L 0.45 TCGA-EE-A3AG-06 3 129276010 129276010 G A PLXND1 Silent p.I1834I 0.42 TCGA-EE-A3AG-06 3 12977612 12977612 G A IQSEC1 Silent p.L316L 0.57 TCGA-EE-A3AG-06 3 130159661 130159661 C T COL6A5 Missense_Mutation p.S2160L 0.41 tolerated(1) benign(0.283) TCGA-EE-A3AG-06 3 130188260 130188260 G A COL6A5 Missense_Mutation p.R2471Q 0.59 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A3AG-06 3 130300434 130300434 G A COL6A6 Missense_Mutation p.D1193N 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AG-06 3 131404763 131404763 G A CPNE4 Missense_Mutation p.R183C 0.27 deleterious(0.02) possibly_damaging(0.817) TCGA-EE-A3AG-06 3 133166238 133166238 A G BFSP2 Silent p.K189K 0.18 TCGA-EE-A3AG-06 3 134885813 134885813 A T EPHB1 Missense_Mutation p.Y575F 0.22 tolerated(0.59) benign(0.02) TCGA-EE-A3AG-06 3 139181108 139181108 A G RBP2 Missense_Mutation p.I33T 0.50 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A3AG-06 3 139297845 139297845 C T NMNAT3 Silent p.G17G 0.49 TCGA-EE-A3AG-06 3 140695236 140695236 C T SLC25A36 Missense_Mutation p.P293S 0.48 deleterious(0) probably_damaging(0.977) TCGA-EE-A3AG-06 3 1414033 1414033 G A CNTN6 Missense_Mutation p.E515K 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 3 143550971 143550971 G A SLC9A9 Missense_Mutation p.P90S 0.41 tolerated(0.1) benign(0.446) TCGA-EE-A3AG-06 3 148559645 148559645 C T CPB1 Silent p.F170F 0.47 TCGA-EE-A3AG-06 3 152150596 152150596 C T MBNL1 Missense_Mutation p.P146S 0.45 deleterious(0.04) benign(0.098) TCGA-EE-A3AG-06 3 155203476 155203476 C T PLCH1 Silent p.K889K 0.54 TCGA-EE-A3AG-06 3 156710923 156710923 A T RP11-6F2.3 5'Flank 0.38 TCGA-EE-A3AG-06 3 164716332 164716332 G A SI Silent p.I1512I 0.45 TCGA-EE-A3AG-06 3 164724636 164724636 G A SI Silent p.L1458L 0.46 TCGA-EE-A3AG-06 3 167000104 167000104 G A ZBBX Missense_Mutation p.L726F 0.45 deleterious(0.02) possibly_damaging(0.861) TCGA-EE-A3AG-06 3 167189520 167189520 G A SERPINI2 Nonsense_Mutation p.Q35* 0.51 TCGA-EE-A3AG-06 3 169644746 169644746 C T SAMD7 Silent p.P232P 0.25 TCGA-EE-A3AG-06 3 169644765 169644765 G A SAMD7 Missense_Mutation p.E239K 0.29 tolerated(0.44) benign(0.008) TCGA-EE-A3AG-06 3 169656227 169656227 T A SAMD7 Missense_Mutation p.M425K 0.42 tolerated(0.25) benign(0.002) TCGA-EE-A3AG-06 3 170201138 170201138 G T SLC7A14 Silent p.V360V 0.29 TCGA-EE-A3AG-06 3 171405331 171405331 T C PLD1 Missense_Mutation p.K528R 0.39 tolerated(0.42) benign(0.001) TCGA-EE-A3AG-06 3 172016555 172016555 C T FNDC3B Missense_Mutation p.P347S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 3 172482202 172482202 C T ECT2 Silent p.P401P 0.37 TCGA-EE-A3AG-06 3 182897272 182897272 C T MCF2L2 Missense_Mutation p.E1081K 0.57 tolerated_low_confidence(0.11) benign(0.007) TCGA-EE-A3AG-06 3 186024722 186024722 C T DGKG Missense_Mutation p.G38S 0.45 tolerated(0.17) benign(0.008) TCGA-EE-A3AG-06 3 187386815 187386815 G A SST 3'UTR 0.56 TCGA-EE-A3AG-06 3 188584049 188584049 C T LPP Missense_Mutation p.T491I 0.39 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 3 188584050 188584050 C T LPP Silent p.T491T 0.39 TCGA-EE-A3AG-06 3 188933083 188933083 G A TPRG1 Silent p.P71P 0.37 TCGA-EE-A3AG-06 3 193019069 193019069 G A ATP13A5 Silent p.S902S 0.37 TCGA-EE-A3AG-06 3 193175222 193175222 G A ATP13A4 Silent p.I569I 0.47 TCGA-EE-A3AG-06 3 195295875 195295875 G A APOD Missense_Mutation p.P156S 0.48 tolerated(0.17) benign(0.125) TCGA-EE-A3AG-06 3 195517616 195517616 C T MUC4 Missense_Mutation p.E279K 0.55 unknown(0) TCGA-EE-A3AG-06 3 25805596 25805596 G A NGLY1 Silent p.N151N 0.21 TCGA-EE-A3AG-06 3 26751886 26751886 C T LRRC3B Silent p.S241S 0.65 TCGA-EE-A3AG-06 3 2908625 2908625 G A CNTN4 Missense_Mutation p.R215K 0.29 tolerated(0.1) benign(0.272) TCGA-EE-A3AG-06 3 32932199 32932199 G A TRIM71 Silent p.K501K 0.47 TCGA-EE-A3AG-06 3 32995250 32995250 G A CCR4 Missense_Mutation p.M112I 0.62 tolerated(0.8) benign(0) TCGA-EE-A3AG-06 3 36872628 36872628 C T TRANK1 Missense_Mutation p.E2772K 0.28 tolerated(0.05) possibly_damaging(0.603) TCGA-EE-A3AG-06 3 38101301 38101301 G A DLEC1 Missense_Mutation p.D211N 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 3 38592273 38592273 C T SCN5A Missense_Mutation p.E1864K 0.29 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 3 38620944 38620944 C T SCN5A Missense_Mutation p.D1091N 0.64 tolerated(0.55) benign(0.015) TCGA-EE-A3AG-06 3 38622601 38622601 C T SCN5A Missense_Mutation p.E1017K 0.68 tolerated(0.78) benign(0.004) TCGA-EE-A3AG-06 3 38750978 38750978 C T SCN10A Silent p.Q1424Q 0.63 TCGA-EE-A3AG-06 3 38755466 38755466 G A SCN10A Nonsense_Mutation p.R1263* 0.49 TCGA-EE-A3AG-06 3 38798333 38798333 C T SCN10A Missense_Mutation p.M374I 0.59 tolerated(0.07) benign(0.123) TCGA-EE-A3AG-06 3 38888308 38888308 C T SCN11A Silent p.V1751V 0.66 TCGA-EE-A3AG-06 3 38961481 38961481 C T SCN11A Missense_Mutation p.E302K 0.20 tolerated(0.46) benign(0.026) TCGA-EE-A3AG-06 3 38966945 38966945 G A SCN11A Missense_Mutation p.R225C 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 3 38991883 38991883 G A SCN11A 5'UTR 0.55 TCGA-EE-A3AG-06 3 39184921 39184921 G A CSRNP1 Silent p.F465F 0.31 TCGA-EE-A3AG-06 3 39307251 39307251 C T CX3CR1 Missense_Mutation p.M282I 0.62 tolerated(0.07) benign(0.006) TCGA-EE-A3AG-06 3 42251704 42251704 C T TRAK1 Intron 0.60 TCGA-EE-A3AG-06 3 44684197 44684197 C T ZNF197 Silent p.L525L 0.66 TCGA-EE-A3AG-06 3 44762592 44762592 C T ZNF502 Missense_Mutation p.P95S 0.28 tolerated(0.53) benign(0.005) TCGA-EE-A3AG-06 3 44763609 44763609 C T ZNF502 Missense_Mutation p.P434S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 3 44803342 44803342 G A KIF15 5'UTR 0.64 TCGA-EE-A3AG-06 3 4744524 4744524 C T ITPR1 Missense_Mutation p.P1501L 0.27 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A3AG-06 3 4852968 4852968 G A ITPR1 Missense_Mutation p.R2416K 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 3 48614144 48614144 G A COL7A1 Missense_Mutation p.P1889S 1.00 unknown(0) TCGA-EE-A3AG-06 3 48624918 48624918 C T COL7A1 Nonsense_Mutation p.W976* 0.92 TCGA-EE-A3AG-06 3 49154881 49154881 G A USP19 Missense_Mutation p.P199S 0.86 tolerated_low_confidence(0.2) benign(0.061) TCGA-EE-A3AG-06 3 49699171 49699171 C T BSN Missense_Mutation p.P3298L 0.88 unknown(0) TCGA-EE-A3AG-06 3 49753850 49753850 C T RNF123 Missense_Mutation p.P1147L 0.87 deleterious(0) probably_damaging(0.99) TCGA-EE-A3AG-06 3 49753851 49753851 C T RNF123 Silent p.P1147P 0.86 TCGA-EE-A3AG-06 3 50655029 50655029 C T MAPKAPK3 Silent p.G11G 0.74 TCGA-EE-A3AG-06 3 51265502 51265502 G A DOCK3 Missense_Mutation p.E544K 1.00 deleterious(0) probably_damaging(0.947) TCGA-EE-A3AG-06 3 51749229 51749229 G A GRM2 Silent p.L480L 1.00 TCGA-EE-A3AG-06 3 52538520 52538520 C T STAB1 Silent p.T398T 0.91 TCGA-EE-A3AG-06 3 52582135 52582135 A T PBRM1 Missense_Mutation p.L1565M 0.83 tolerated(0.3) possibly_damaging(0.766) TCGA-EE-A3AG-06 3 52800230 52800230 G A NEK4 Silent p.S174S 0.83 TCGA-EE-A3AG-06 3 53760973 53760973 C T CACNA1D Missense_Mutation p.S743F 0.87 tolerated(1) probably_damaging(0.998) TCGA-EE-A3AG-06 3 53852986 53852986 G A CHDH Nonsense_Mutation p.Q449* 0.84 TCGA-EE-A3AG-06 3 58154221 58154221 C T FLNB Missense_Mutation p.S2449F 0.96 deleterious(0.01) possibly_damaging(0.857) TCGA-EE-A3AG-06 3 67426209 67426209 C T SUCLG2 Intron 0.73 TCGA-EE-A3AG-06 3 75679929 75679929 G A MIR1324 RNA 0.18 TCGA-EE-A3AG-06 3 9506423 9506423 A G SETD5 Intron 0.34 TCGA-EE-A3AG-06 3 96706808 96706808 G A EPHA6 Missense_Mutation p.G362E 0.35 deleterious(0) probably_damaging(0.964) TCGA-EE-A3AG-06 3 97852246 97852246 G A OR5H1 Silent p.R235R 0.56 TCGA-EE-A3AG-06 3 97868918 97868918 C T OR5H14 Missense_Mutation p.S230F 0.52 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3AG-06 3 9948696 9948696 C T IL17RE Missense_Mutation p.T193I 0.35 deleterious(0.01) benign(0.323) TCGA-EE-A3AG-06 3 9962213 9962213 G A IL17RC Silent p.G239G 0.64 TCGA-EE-A3AG-06 4 100063877 100063877 C T ADH4 Missense_Mutation p.E25K 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3AG-06 4 100273819 100273819 C T ADH1C Missense_Mutation p.G5E 0.38 probably_damaging(0.996) TCGA-EE-A3AG-06 4 100349317 100349317 G A ADH7 Missense_Mutation p.P112S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AG-06 4 1018188 1018188 G A FGFRL1 Missense_Mutation p.V270M 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 4 103866440 103866440 G A SLC9B1 Missense_Mutation p.A188V 0.34 deleterious(0) probably_damaging(0.948) TCGA-EE-A3AG-06 4 10447658 10447658 G A ZNF518B Missense_Mutation p.H99Y 0.43 deleterious(0.04) benign(0.446) TCGA-EE-A3AG-06 4 106614568 106614568 G A INTS12 Missense_Mutation p.P129S 0.42 tolerated(0.06) benign(0.404) TCGA-EE-A3AG-06 4 108552847 108552847 G A PAPSS1 Missense_Mutation p.P559L 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 4 111397747 111397747 C T ENPEP Silent p.H59H 0.40 TCGA-EE-A3AG-06 4 111539383 111539383 C T PITX2 Silent p.L291L 0.44 TCGA-EE-A3AG-06 4 11401168 11401168 T C HS3ST1 Silent p.L154L 0.38 TCGA-EE-A3AG-06 4 114275446 114275446 C T ANK2 Missense_Mutation p.S1891F 0.49 probably_damaging(0.999) TCGA-EE-A3AG-06 4 114276414 114276414 C T ANK2 Missense_Mutation p.P2214S 0.45 probably_damaging(1) TCGA-EE-A3AG-06 4 1165760 1165760 T C SPON2 Missense_Mutation p.I34V 0.39 tolerated(0.86) benign(0.002) TCGA-EE-A3AG-06 4 119951458 119951458 G A SYNPO2 Missense_Mutation p.E510K 0.38 deleterious(0) probably_damaging(0.92) TCGA-EE-A3AG-06 4 123161431 123161431 C T KIAA1109 Missense_Mutation p.R1532C 0.57 probably_damaging(0.998) TCGA-EE-A3AG-06 4 123342510 123342510 G A ADAD1 Missense_Mutation p.E528K 0.33 deleterious(0) benign(0.155) TCGA-EE-A3AG-06 4 124177183 124177183 C T SPATA5 Missense_Mutation p.P785S 0.43 deleterious(0.02) possibly_damaging(0.841) TCGA-EE-A3AG-06 4 126239462 126239462 C T FAT4 Silent p.F632F 0.37 TCGA-EE-A3AG-06 4 126402778 126402778 G A FAT4 Missense_Mutation p.R4234Q 0.40 benign(0.006) TCGA-EE-A3AG-06 4 126412574 126412574 G A FAT4 Missense_Mutation p.R4866K 0.49 probably_damaging(0.977) TCGA-EE-A3AG-06 4 129783278 129783278 C T JADE1 Silent p.I467I 0.45 TCGA-EE-A3AG-06 4 13603467 13603467 C T BOD1L1 Missense_Mutation p.S1686N 0.42 probably_damaging(0.998) TCGA-EE-A3AG-06 4 13616171 13616171 G A BOD1L1 Missense_Mutation p.P275S 0.36 benign(0.015) TCGA-EE-A3AG-06 4 141315165 141315165 G A CLGN Missense_Mutation p.P394S 0.35 deleterious(0.04) possibly_damaging(0.851) TCGA-EE-A3AG-06 4 142150761 142150761 C A ZNF330 Missense_Mutation p.H110N 0.47 deleterious(0) probably_damaging(0.948) TCGA-EE-A3AG-06 4 148554078 148554078 G T TMEM184C Missense_Mutation p.L268F 0.11 tolerated(0.06) benign(0.438) TCGA-EE-A3AG-06 4 151186938 151186938 C T LRBA Missense_Mutation p.G2843E 0.82 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 4 154709599 154709599 G A SFRP2 Missense_Mutation p.S130F 0.71 deleterious(0) possibly_damaging(0.73) TCGA-EE-A3AG-06 4 159162695 159162695 C T TMEM144 Silent p.T279T 0.33 TCGA-EE-A3AG-06 4 177098301 177098301 C T WDR17 Missense_Mutation p.T1220I 0.75 tolerated(0.36) benign(0.001) TCGA-EE-A3AG-06 4 183650332 183650332 G A TENM3 Silent p.K861K 0.86 TCGA-EE-A3AG-06 4 187172454 187172454 C T KLKB1 Silent p.S280S 0.70 TCGA-EE-A3AG-06 4 187172455 187172455 C T KLKB1 Missense_Mutation p.L281F 0.70 deleterious(0.02) benign(0.258) TCGA-EE-A3AG-06 4 187455191 187455191 C T MTNR1A Silent p.R235R 0.66 TCGA-EE-A3AG-06 4 26483232 26483232 C T CCKAR 3'UTR 0.46 TCGA-EE-A3AG-06 4 30732387 30732387 C T PCDH7 Intron 0.26 TCGA-EE-A3AG-06 4 3189409 3189409 C T HTT Missense_Mutation p.S1674L 0.42 possibly_damaging(0.626) TCGA-EE-A3AG-06 4 37962567 37962567 C T PTTG2 Missense_Mutation p.S171F 0.46 tolerated(0.16) benign(0.03) TCGA-EE-A3AG-06 4 38051318 38051318 C T TBC1D1 Missense_Mutation p.S570F 0.42 deleterious(0.03) possibly_damaging(0.794) TCGA-EE-A3AG-06 4 38776112 38776112 C T TLR10 Missense_Mutation p.R367K 0.34 tolerated(0.37) benign(0) TCGA-EE-A3AG-06 4 40104513 40104513 C T N4BP2 Missense_Mutation p.L350F 0.27 deleterious(0.03) benign(0.06) TCGA-EE-A3AG-06 4 40104811 40104811 C G N4BP2 Missense_Mutation p.P449R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 4 40245440 40245440 C T RHOH Missense_Mutation p.A145V 0.39 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 4 40440409 40440409 G A RBM47 Silent p.L168L 0.38 TCGA-EE-A3AG-06 4 40440446 40440446 G A RBM47 Silent p.I155I 0.54 TCGA-EE-A3AG-06 4 41648648 41648648 G A LIMCH1 Missense_Mutation p.R468K 0.44 deleterious(0.05) probably_damaging(0.992) TCGA-EE-A3AG-06 4 42467036 42467036 G A ATP8A1 Silent p.V794V 0.37 TCGA-EE-A3AG-06 4 46053484 46053484 C T GABRG1 Missense_Mutation p.G363E 0.35 tolerated(0.8) benign(0.005) TCGA-EE-A3AG-06 4 46930341 46930341 G A GABRA4 Silent p.A522A 0.48 TCGA-EE-A3AG-06 4 49019273 49019273 G A CWH43 Nonsense_Mutation p.W398* 0.52 TCGA-EE-A3AG-06 4 52883365 52883365 G A LRRC66 Missense_Mutation p.H139Y 0.61 deleterious(0.03) possibly_damaging(0.733) TCGA-EE-A3AG-06 4 55155000 55155000 T C PDGFRA Silent p.S903S 0.55 TCGA-EE-A3AG-06 4 6081952 6081952 A G JAKMIP1 Missense_Mutation p.F397L 0.54 deleterious(0.03) benign(0.384) TCGA-EE-A3AG-06 4 619505 619505 G A PDE6B Silent p.E30E 0.48 TCGA-EE-A3AG-06 4 6865634 6865634 C T KIAA0232 Silent p.F1175F 0.45 TCGA-EE-A3AG-06 4 69816923 69816923 G A UGT2A3 Missense_Mutation p.P186S 0.45 tolerated(0.06) probably_damaging(0.982) TCGA-EE-A3AG-06 4 70898961 70898961 G A HTN3 3'UTR 0.57 TCGA-EE-A3AG-06 4 71068511 71068511 G A ODAM Silent p.A229A 0.25 TCGA-EE-A3AG-06 4 72306347 72306347 C T SLC4A4 Silent p.F274F 0.34 TCGA-EE-A3AG-06 4 77003040 77003040 G A ART3 Missense_Mutation p.D45N 0.48 tolerated(0.31) benign(0.029) TCGA-EE-A3AG-06 4 77305440 77305440 C T CCDC158 Missense_Mutation p.R176Q 0.47 tolerated(0.06) probably_damaging(0.975) TCGA-EE-A3AG-06 4 7741963 7741963 G A SORCS2 Missense_Mutation p.R1151Q 0.60 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-EE-A3AG-06 4 79432514 79432514 C T FRAS1 Silent p.P3289P 0.38 TCGA-EE-A3AG-06 4 80328367 80328367 G A GK2 Missense_Mutation p.R330C 0.46 deleterious(0.01) probably_damaging(0.946) TCGA-EE-A3AG-06 4 80329126 80329126 C T GK2 Missense_Mutation p.E77K 0.47 tolerated(1) benign(0.009) TCGA-EE-A3AG-06 4 81967491 81967491 G A BMP3 Missense_Mutation p.E306K 0.35 tolerated(0.11) possibly_damaging(0.831) TCGA-EE-A3AG-06 4 83602042 83602042 C T SCD5 Silent p.R129R 0.44 TCGA-EE-A3AG-06 4 83839111 83839111 G A THAP9 Silent p.E582E 0.48 TCGA-EE-A3AG-06 4 84240599 84240599 G A HPSE Missense_Mutation p.P133S 0.32 tolerated(0.08) benign(0.165) TCGA-EE-A3AG-06 4 84240600 84240600 G A HPSE Silent p.I132I 0.30 TCGA-EE-A3AG-06 4 87724936 87724936 G A PTPN13 Missense_Mutation p.G2199S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AG-06 4 88533886 88533886 G A DSPP Missense_Mutation p.G183E 0.47 possibly_damaging(0.519) TCGA-EE-A3AG-06 4 88731890 88731890 T C IBSP Silent p.L127L 0.49 TCGA-EE-A3AG-06 4 93511296 93511296 G A GRID2 Missense_Mutation p.E35K 0.50 tolerated(0.08) possibly_damaging(0.893) TCGA-EE-A3AG-06 4 94006212 94006212 C T GRID2 Missense_Mutation p.S104F 0.46 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A3AG-06 4 956341 956341 G A DGKQ Missense_Mutation p.S699F 0.46 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 4 99273742 99273742 T C RAP1GDS1 Silent p.C118C 0.29 TCGA-EE-A3AG-06 4 99993724 99993724 C T ADH5 Missense_Mutation p.S367N 0.35 deleterious(0.01) benign(0.236) TCGA-EE-A3AG-06 5 101735366 101735366 C T SLCO6A1 Silent p.G569G 0.54 TCGA-EE-A3AG-06 5 109183456 109183456 C T MAN2A1 Nonsense_Mutation p.R981* 0.68 TCGA-EE-A3AG-06 5 110427980 110427980 G A WDR36 5'UTR 0.62 TCGA-EE-A3AG-06 5 110835631 110835631 C T STARD4 Missense_Mutation p.A191T 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A3AG-06 5 112198222 112198222 C A SRP19 Missense_Mutation p.P20H 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 112339742 112339742 C T DCP2 Missense_Mutation p.H304Y 0.30 tolerated_low_confidence(0.06) benign(0.159) TCGA-EE-A3AG-06 5 112769639 112769639 G A TSSK1B Missense_Mutation p.P300S 0.31 tolerated_low_confidence(0.1) benign(0.016) TCGA-EE-A3AG-06 5 115146962 115146962 C T CDO1 Missense_Mutation p.G100E 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 5 121759307 121759307 C T SNCAIP Missense_Mutation p.S292F 0.23 deleterious(0.01) benign(0.206) TCGA-EE-A3AG-06 5 121786742 121786742 C T SNCAIP Missense_Mutation p.P734S 0.71 tolerated(0.14) probably_damaging(0.999) TCGA-EE-A3AG-06 5 121787254 121787254 G A SNCAIP Silent p.K904K 0.51 TCGA-EE-A3AG-06 5 122281819 122281819 G A SNX24 Missense_Mutation p.E72K 0.40 deleterious(0.01) possibly_damaging(0.88) TCGA-EE-A3AG-06 5 122722351 122722351 G A CEP120 Missense_Mutation p.P481S 0.33 tolerated(0.07) possibly_damaging(0.542) TCGA-EE-A3AG-06 5 122758678 122758678 G A CEP120 Silent p.S5S 0.58 TCGA-EE-A3AG-06 5 123977036 123977036 G A ZNF608 Silent p.S1453S 0.25 TCGA-EE-A3AG-06 5 1243685 1243685 G A SLC6A18 Missense_Mutation p.G383S 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 5 127616001 127616001 C T FBN2 Missense_Mutation p.E2341K 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 132150734 132150734 C T SOWAHA Missense_Mutation p.S474F 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AG-06 5 132161783 132161783 G A SHROOM1 Missense_Mutation p.T17I 0.75 deleterious(0) possibly_damaging(0.785) TCGA-EE-A3AG-06 5 132585175 132585175 C T FSTL4 Missense_Mutation p.G274E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 132585176 132585176 C T FSTL4 Missense_Mutation p.G274R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 132939621 132939621 C T FSTL4 Silent p.P18P 0.48 TCGA-EE-A3AG-06 5 135228119 135228119 G A IL9 Silent p.F132F 0.33 TCGA-EE-A3AG-06 5 135583275 135583275 C T TRPC7 Silent p.V576V 0.32 TCGA-EE-A3AG-06 5 13700980 13700980 C T DNAH5 Missense_Mutation p.E4498K 0.87 possibly_damaging(0.621) TCGA-EE-A3AG-06 5 13737588 13737588 C T DNAH5 Missense_Mutation p.R3743K 0.85 benign(0.22) TCGA-EE-A3AG-06 5 137481567 137481567 C T BRD8 Silent p.L1093L 0.54 TCGA-EE-A3AG-06 5 137727415 137727415 C T KDM3B Silent p.S698S 0.56 TCGA-EE-A3AG-06 5 137756620 137756620 C T KDM3B Missense_Mutation p.P1314L 0.65 tolerated(0.05) possibly_damaging(0.668) TCGA-EE-A3AG-06 5 13781030 13781030 G A DNAH5 Silent p.L2953L 0.78 TCGA-EE-A3AG-06 5 137893590 137893590 G C HSPA9 Missense_Mutation p.A534G 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A3AG-06 5 139189215 139189215 C T PSD2 Missense_Mutation p.P64S 0.29 deleterious_low_confidence(0.03) benign(0.046) TCGA-EE-A3AG-06 5 13931332 13931332 C T DNAH5 Missense_Mutation p.E27K 0.91 benign(0.292) TCGA-EE-A3AG-06 5 139748220 139748220 C T SLC4A9 Silent p.S825S 0.22 TCGA-EE-A3AG-06 5 140035472 140035472 C T IK Silent p.F232F 0.50 TCGA-EE-A3AG-06 5 140202001 140202001 C T PCDHA5 Missense_Mutation p.T214I 0.62 tolerated_low_confidence(0.15) benign(0.039) TCGA-EE-A3AG-06 5 140229475 140229475 G A PCDHA9 Silent p.K465K 0.93 TCGA-EE-A3AG-06 5 140257385 140257385 T A PCDHA12 Silent p.L776L 0.32 TCGA-EE-A3AG-06 5 140263148 140263148 C T PCDHA13 Missense_Mutation p.S432L 0.47 tolerated_low_confidence(0.06) benign(0.411) TCGA-EE-A3AG-06 5 140263830 140263830 G A PCDHA13 Silent p.L659L 0.24 TCGA-EE-A3AG-06 5 140307836 140307836 C T PCDHAC1 Silent p.F453F 0.52 TCGA-EE-A3AG-06 5 140308012 140308012 C T PCDHAC1 Missense_Mutation p.S512F 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 5 140482426 140482426 C T PCDHB3 Silent p.P731P 0.53 TCGA-EE-A3AG-06 5 140502793 140502793 G A PCDHB4 Missense_Mutation p.E405K 0.17 tolerated(0.07) benign(0.116) TCGA-EE-A3AG-06 5 140554346 140554346 G A PCDHB7 Missense_Mutation p.V644I 0.48 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EE-A3AG-06 5 140558523 140558523 G A PCDHB8 Missense_Mutation p.R303Q 0.40 tolerated_low_confidence(0.11) benign(0.008) TCGA-EE-A3AG-06 5 140559618 140559618 C T PCDHB8 Missense_Mutation p.S668F 0.53 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-EE-A3AG-06 5 140588986 140588986 C T PCDHB12 Silent p.S169S 0.25 TCGA-EE-A3AG-06 5 140590624 140590624 G A PCDHB12 Silent p.R715R 0.25 TCGA-EE-A3AG-06 5 140710337 140710337 G A PCDHGA1 Missense_Mutation p.G29E 0.30 tolerated_low_confidence(0.16) benign(0.06) TCGA-EE-A3AG-06 5 140746171 140746171 C T PCDHGA5 Silent p.S758S 0.59 TCGA-EE-A3AG-06 5 140754309 140754309 C T PCDHGA6 Missense_Mutation p.P220L 0.28 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 5 140754840 140754840 C T PCDHGA6 Missense_Mutation p.S397L 0.36 tolerated_low_confidence(0.11) possibly_damaging(0.461) TCGA-EE-A3AG-06 5 140763703 140763703 G A PCDHGA7 Missense_Mutation p.E413K 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AG-06 5 140794330 140794330 C T PCDHGA10 Missense_Mutation p.H530Y 0.53 deleterious_low_confidence(0) benign(0.184) TCGA-EE-A3AG-06 5 141019443 141019443 C T FCHSD1 3'UTR 0.42 TCGA-EE-A3AG-06 5 141033693 141033693 G A ARAP3 Nonsense_Mutation p.Q1487* 0.24 TCGA-EE-A3AG-06 5 142264942 142264942 A T ARHGAP26 Missense_Mutation p.K155M 0.28 deleterious(0) probably_damaging(0.934) TCGA-EE-A3AG-06 5 143853416 143853416 G A KCTD16 Silent p.L342L 0.33 TCGA-EE-A3AG-06 5 147051395 147051395 G A JAKMIP2 5'UTR 0.48 TCGA-EE-A3AG-06 5 148422391 148422391 G A SH3TC2 Missense_Mutation p.S132F 0.56 deleterious(0) possibly_damaging(0.67) TCGA-EE-A3AG-06 5 149435634 149435634 C T CSF1R Missense_Mutation p.D837N 0.22 deleterious(0) probably_damaging(0.958) TCGA-EE-A3AG-06 5 149459714 149459714 G A CSF1R Missense_Mutation p.H165Y 0.30 tolerated(0.33) possibly_damaging(0.703) TCGA-EE-A3AG-06 5 149754238 149754238 C T TCOF1 Missense_Mutation p.S381F 0.25 tolerated(0.07) probably_damaging(0.996) TCGA-EE-A3AG-06 5 150922028 150922028 G A FAT2 Missense_Mutation p.S2887F 0.27 probably_damaging(0.987) TCGA-EE-A3AG-06 5 153755896 153755896 C T GALNT10 Nonsense_Mutation p.R210* 0.34 TCGA-EE-A3AG-06 5 154393362 154393362 G A KIF4B 5'UTR 0.49 TCGA-EE-A3AG-06 5 154395457 154395457 C T KIF4B Missense_Mutation p.R680C 0.62 deleterious(0) probably_damaging(0.987) TCGA-EE-A3AG-06 5 154396321 154396321 G A KIF4B Missense_Mutation p.E968K 0.39 deleterious(0.05) benign(0.016) TCGA-EE-A3AG-06 5 156375464 156375464 C T TIMD4 Nonsense_Mutation p.W269* 0.31 TCGA-EE-A3AG-06 5 156816240 156816240 G C CYFIP2 Missense_Mutation p.R1058P 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 5 156817610 156817610 C T CYFIP2 Silent p.F1150F 0.33 TCGA-EE-A3AG-06 5 160721436 160721436 C A GABRB2 Splice_Site p.X398_splice 0.62 TCGA-EE-A3AG-06 5 167850869 167850869 C T WWC1 Missense_Mutation p.P536S 0.50 tolerated(0.55) probably_damaging(1) TCGA-EE-A3AG-06 5 168671773 168671773 C T SLIT3 Missense_Mutation p.E93K 0.29 tolerated(0.86) probably_damaging(0.995) TCGA-EE-A3AG-06 5 169116293 169116293 C T DOCK2 Missense_Mutation p.P267S 0.58 deleterious(0.03) possibly_damaging(0.901) TCGA-EE-A3AG-06 5 170668034 170668034 G A RANBP17 Missense_Mutation p.C842Y 0.32 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A3AG-06 5 175530241 175530241 G A FAM153B Missense_Mutation p.D149N 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.728) TCGA-EE-A3AG-06 5 175716958 175716958 C A SIMC1 Intron 0.17 TCGA-EE-A3AG-06 5 176083871 176083871 C T TSPAN17 Intron 0.37 TCGA-EE-A3AG-06 5 176083872 176083872 C T TSPAN17 Intron 0.35 TCGA-EE-A3AG-06 5 176083873 176083873 C T TSPAN17 Intron 0.36 TCGA-EE-A3AG-06 5 176084625 176084625 C T TSPAN17 Missense_Mutation p.P309S 0.20 tolerated_low_confidence(0.5) benign(0.032) TCGA-EE-A3AG-06 5 176084626 176084626 C T TSPAN17 Missense_Mutation p.P309L 0.20 tolerated_low_confidence(0.39) benign(0) TCGA-EE-A3AG-06 5 176306743 176306743 C T UNC5A Silent p.S795S 0.49 TCGA-EE-A3AG-06 5 176524556 176524556 C G FGFR4 Missense_Mutation p.P763R 0.29 deleterious(0) benign(0.231) TCGA-EE-A3AG-06 5 176939793 176939793 G A DDX41 Missense_Mutation p.H463Y 0.53 deleterious(0) probably_damaging(0.965) TCGA-EE-A3AG-06 5 177161923 177161923 C T FAM153A Missense_Mutation p.D149N 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.728) TCGA-EE-A3AG-06 5 19571815 19571815 C T CDH18 Missense_Mutation p.D376N 1.00 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3AG-06 5 23526472 23526472 C T PRDM9 Silent p.L425L 0.92 TCGA-EE-A3AG-06 5 2755284 2755284 G A C5orf38 3'UTR 0.47 TCGA-EE-A3AG-06 5 31422952 31422952 C A DROSHA Missense_Mutation p.V1121F 0.93 deleterious(0) possibly_damaging(0.565) TCGA-EE-A3AG-06 5 31799773 31799773 G A PDZD2 Missense_Mutation p.D140N 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 32074472 32074472 T C PDZD2 Missense_Mutation p.L1087S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 5 32242174 32242174 A G MTMR12 Missense_Mutation p.V387A 0.32 deleterious(0) benign(0.259) TCGA-EE-A3AG-06 5 33938078 33938078 G A RXFP3 Silent p.S411S 0.49 TCGA-EE-A3AG-06 5 37183667 37183667 C T C5orf42 Missense_Mutation p.G1539D 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 5 38919081 38919081 C T OSMR Missense_Mutation p.S501F 0.86 deleterious(0) possibly_damaging(0.659) TCGA-EE-A3AG-06 5 39376177 39376177 G A DAB2 Silent p.S723S 0.91 TCGA-EE-A3AG-06 5 39376178 39376178 G A DAB2 Missense_Mutation p.S723F 0.89 deleterious(0) benign(0.042) TCGA-EE-A3AG-06 5 41057398 41057398 C T MROH2B Missense_Mutation p.R274K 0.75 tolerated(1) benign(0.001) TCGA-EE-A3AG-06 5 434374 434374 A T AHRR Missense_Mutation p.M529L 0.59 tolerated(0.07) benign(0.001) TCGA-EE-A3AG-06 5 43659398 43659398 C T NNT Silent p.I860I 0.85 TCGA-EE-A3AG-06 5 480162 480162 C T SLC9A3 Intron 0.45 TCGA-EE-A3AG-06 5 5190095 5190095 G A ADAMTS16 Silent p.V353V 0.45 TCGA-EE-A3AG-06 5 55212752 55212752 C T IL31RA Missense_Mutation p.S700F 0.38 tolerated(0.49) possibly_damaging(0.751) TCGA-EE-A3AG-06 5 55237154 55237154 G A IL6ST Missense_Mutation p.S838L 0.40 tolerated(0.06) benign(0.005) TCGA-EE-A3AG-06 5 60053414 60053414 G A ELOVL7 Silent p.S186S 0.42 TCGA-EE-A3AG-06 5 61648535 61648535 C T KIF2A Missense_Mutation p.P152L 0.34 tolerated(0.1) benign(0.001) TCGA-EE-A3AG-06 5 6753029 6753029 T C PAPD7 Missense_Mutation p.V438A 0.86 deleterious_low_confidence(0.03) benign(0.031) TCGA-EE-A3AG-06 5 70837355 70837355 C T BDP1 Missense_Mutation p.H2033Y 0.36 tolerated(0.16) benign(0.006) TCGA-EE-A3AG-06 5 72469311 72469311 G A TMEM174 Missense_Mutation p.V81I 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3AG-06 5 72980679 72980679 G A ARHGEF28 Translation_Start_Site p.M1? 0.32 deleterious(0.02) benign(0.01) TCGA-EE-A3AG-06 5 74130379 74130379 C T FAM169A Missense_Mutation p.R121Q 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3AG-06 5 75427893 75427893 C T SV2C Silent p.I106I 0.51 TCGA-EE-A3AG-06 5 76128963 76128963 C T F2RL1 Silent p.I177I 0.41 TCGA-EE-A3AG-06 5 78379595 78379595 G A BHMT2 Missense_Mutation p.R309K 0.40 deleterious(0.03) benign(0.269) TCGA-EE-A3AG-06 5 78379596 78379596 G A BHMT2 Silent p.R309R 0.42 TCGA-EE-A3AG-06 5 79027814 79027814 G A CMYA5 Missense_Mutation p.E1076K 0.45 benign(0.099) TCGA-EE-A3AG-06 5 79837673 79837673 C T FAM151B 3'UTR 0.35 TCGA-EE-A3AG-06 5 80608525 80608525 C T ZCCHC9 3'UTR 0.44 TCGA-EE-A3AG-06 5 95011280 95011280 G A SPATA9 Nonsense_Mutation p.R72* 0.57 TCGA-EE-A3AG-06 5 95116051 95116051 C T RHOBTB3 Silent p.L460L 0.60 TCGA-EE-A3AG-06 6 100395740 100395740 C T MCHR2 Missense_Mutation p.G97E 0.90 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3AG-06 6 105563648 105563648 C T BVES Missense_Mutation p.E291K 0.84 tolerated(0.06) benign(0.41) TCGA-EE-A3AG-06 6 107955662 107955662 C T SOBP Silent p.P538P 0.90 TCGA-EE-A3AG-06 6 112671178 112671178 C T RFPL4B Missense_Mutation p.L90F 0.93 tolerated(0.3) benign(0.002) TCGA-EE-A3AG-06 6 117658463 117658463 C T ROS1 Missense_Mutation p.S1707N 0.88 tolerated(0.17) possibly_damaging(0.579) TCGA-EE-A3AG-06 6 117730773 117730773 C T ROS1 Silent p.A87A 0.88 TCGA-EE-A3AG-06 6 12124382 12124382 C T HIVEP1 Nonsense_Mutation p.Q1452* 0.14 TCGA-EE-A3AG-06 6 130164701 130164701 G A TMEM244 Missense_Mutation p.P56L 0.88 deleterious(0.01) possibly_damaging(0.755) TCGA-EE-A3AG-06 6 136582477 136582477 C T BCLAF1 Missense_Mutation p.D895N 0.09 tolerated(0.14) possibly_damaging(0.728) TCGA-EE-A3AG-06 6 136980431 136980431 G A MAP3K5 Silent p.A484A 0.89 TCGA-EE-A3AG-06 6 139186242 139186242 C T ECT2L Silent p.T467T 0.79 TCGA-EE-A3AG-06 6 152651188 152651188 C T SYNE1 Missense_Mutation p.E4878K 0.87 possibly_damaging(0.524) TCGA-EE-A3AG-06 6 160328212 160328212 C T MAS1 Silent p.I75I 0.87 TCGA-EE-A3AG-06 6 160575853 160575853 C T SLC22A1 Missense_Mutation p.S470F 0.82 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AG-06 6 160908435 160908435 G A LPAL2 RNA 0.79 TCGA-EE-A3AG-06 6 161006193 161006193 C T LPA Missense_Mutation p.D1392N 0.91 tolerated(0.79) benign(0.009) TCGA-EE-A3AG-06 6 16326638 16326638 T C ATXN1 Missense_Mutation p.E635G 0.34 deleterious(0) possibly_damaging(0.503) TCGA-EE-A3AG-06 6 26465416 26465416 C T BTN2A1 Missense_Mutation p.S239F 0.42 deleterious(0.02) benign(0.062) TCGA-EE-A3AG-06 6 26505394 26505394 C T BTN1A1 Silent p.L223L 0.36 TCGA-EE-A3AG-06 6 26509457 26509457 T G BTN1A1 3'UTR 0.46 TCGA-EE-A3AG-06 6 28268885 28268885 C T PGBD1 Silent p.N418N 0.32 TCGA-EE-A3AG-06 6 28297142 28297142 C T ZSCAN31 Missense_Mutation p.G107R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 6 28474150 28474150 G A GPX6 Missense_Mutation p.P100S 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 6 28483515 28483515 G A GPX6 Silent p.F2F 0.40 TCGA-EE-A3AG-06 6 28539923 28539923 G A SCAND3 Missense_Mutation p.S1248L 0.42 deleterious_low_confidence(0.05) probably_damaging(0.987) TCGA-EE-A3AG-06 6 28542428 28542428 C T SCAND3 Missense_Mutation p.G685E 0.42 deleterious_low_confidence(0.04) benign(0.005) TCGA-EE-A3AG-06 6 28542663 28542663 C T SCAND3 Missense_Mutation p.E607K 0.52 deleterious_low_confidence(0.05) benign(0.025) TCGA-EE-A3AG-06 6 28543477 28543477 C T SCAND3 Silent p.K335K 0.49 TCGA-EE-A3AG-06 6 29054742 29054742 G A OR2B3 Missense_Mutation p.A95V 0.43 tolerated(0.3) benign(0.097) TCGA-EE-A3AG-06 6 29275415 29275415 G A OR14J1 Missense_Mutation p.A317T 0.40 tolerated(0.16) benign(0.012) TCGA-EE-A3AG-06 6 29342848 29342848 A C OR12D3 Missense_Mutation p.S73A 0.49 deleterious(0) benign(0.265) TCGA-EE-A3AG-06 6 29407875 29407875 C T OR10C1 Missense_Mutation p.S28F 0.40 tolerated(0.71) benign(0.048) TCGA-EE-A3AG-06 6 29455367 29455367 T A MAS1L Missense_Mutation p.T105S 0.46 deleterious(0.04) benign(0.069) TCGA-EE-A3AG-06 6 29556177 29556177 G A OR2H2 Silent p.V152V 0.46 TCGA-EE-A3AG-06 6 29639183 29639183 C T MOG Intron 0.36 TCGA-EE-A3AG-06 6 29640353 29640353 C T ZFP57 Missense_Mutation p.R512K 0.46 tolerated(0.38) benign(0.007) TCGA-EE-A3AG-06 6 29797603 29797603 C T HLA-G Silent p.S302S 0.47 TCGA-EE-A3AG-06 6 29974628 29974628 G A ZNRD1-AS1 Intron 0.25 TCGA-EE-A3AG-06 6 31138066 31138066 G A POU5F1 Missense_Mutation p.S111F 0.43 tolerated(0.72) benign(0.003) TCGA-EE-A3AG-06 6 31170627 31170627 C T HCG27 3'UTR 0.51 TCGA-EE-A3AG-06 6 31503198 31503198 G A DDX39B Silent p.F227F 0.42 TCGA-EE-A3AG-06 6 31503225 31503225 G A DDX39B Silent p.T218T 0.46 TCGA-EE-A3AG-06 6 31583037 31583037 G A AIF1 5'UTR 0.55 TCGA-EE-A3AG-06 6 31606868 31606868 G A BAG6 3'UTR 0.51 TCGA-EE-A3AG-06 6 31625002 31625002 G A APOM Missense_Mutation p.M90I 0.37 tolerated(0.52) benign(0.034) TCGA-EE-A3AG-06 6 31902149 31902149 C T C2 Intron 0.41 TCGA-EE-A3AG-06 6 31930846 31930846 C T SKIV2L Missense_Mutation p.L461F 0.47 tolerated(0.07) benign(0.178) TCGA-EE-A3AG-06 6 31996295 31996295 G A C4B Silent p.R1072R 0.49 TCGA-EE-A3AG-06 6 32032812 32032812 G A TNXB Silent p.S2209S 0.22 TCGA-EE-A3AG-06 6 32261633 32261633 C T C6orf10 Missense_Mutation p.E273K 0.48 deleterious(0.02) probably_damaging(0.981) TCGA-EE-A3AG-06 6 32549441 32549441 C G HLA-DRB1 Missense_Mutation p.W182S 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 6 32805777 32805777 G A TAP2 Silent p.S78S 0.42 TCGA-EE-A3AG-06 6 32974859 32974859 G A HLA-DOA Silent p.P249P 0.50 TCGA-EE-A3AG-06 6 33036820 33036820 C T HLA-DPA1 Missense_Mutation p.D202N 0.45 deleterious(0.04) benign(0.443) TCGA-EE-A3AG-06 6 33372875 33372875 C T KIFC1 Missense_Mutation p.P335S 0.40 deleterious(0.01) possibly_damaging(0.78) TCGA-EE-A3AG-06 6 33990551 33990551 C T GRM4 3'UTR 0.57 TCGA-EE-A3AG-06 6 34101012 34101012 G A GRM4 Missense_Mutation p.R88C 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 6 34839369 34839369 C T UHRF1BP1 Silent p.I1330I 0.56 TCGA-EE-A3AG-06 6 36193062 36193062 C T BRPF3 Missense_Mutation p.P1067L 0.26 tolerated(0.06) benign(0.011) TCGA-EE-A3AG-06 6 36198362 36198362 C T BRPF3 Silent p.S1198S 0.42 TCGA-EE-A3AG-06 6 36988344 36988344 C T FGD2 Missense_Mutation p.P384S 0.50 deleterious(0.05) probably_damaging(1) TCGA-EE-A3AG-06 6 38547997 38547997 C G BTBD9 Missense_Mutation p.S344T 0.37 tolerated(0.66) unknown(0) TCGA-EE-A3AG-06 6 40360041 40360041 C T LRFN2 Missense_Mutation p.E671K 0.29 tolerated(0.49) benign(0.057) TCGA-EE-A3AG-06 6 4041016 4041016 C T PRPF4B Missense_Mutation p.R475W 0.17 deleterious(0) possibly_damaging(0.689) TCGA-EE-A3AG-06 6 41904341 41904341 C T CCND3 Missense_Mutation p.D223N 0.35 tolerated(0.11) benign(0.077) TCGA-EE-A3AG-06 6 42236396 42236396 C T TRERF1 Silent p.Q311Q 0.47 TCGA-EE-A3AG-06 6 42796807 42796807 C T GLTSCR1L Missense_Mutation p.P246S 0.38 tolerated(0.19) benign(0.04) TCGA-EE-A3AG-06 6 42833015 42833015 C T GLTSCR1L Missense_Mutation p.P1024L 0.36 tolerated_low_confidence(0.23) benign(0.008) TCGA-EE-A3AG-06 6 42992810 42992810 G A RRP36 Missense_Mutation p.S73N 0.56 tolerated(0.38) benign(0.003) TCGA-EE-A3AG-06 6 43166404 43166404 C T CUL9 Missense_Mutation p.S954F 0.45 deleterious(0) probably_damaging(0.974) TCGA-EE-A3AG-06 6 43184064 43184064 T A CUL9 Silent p.A2035A 0.34 TCGA-EE-A3AG-06 6 43267216 43267216 G A SLC22A7 Missense_Mutation p.G163E 0.51 deleterious(0) probably_damaging(0.994) TCGA-EE-A3AG-06 6 43401062 43401062 C T ABCC10 Silent p.N448N 0.29 TCGA-EE-A3AG-06 6 43412958 43412958 C T ABCC10 Missense_Mutation p.S979F 0.42 deleterious(0) possibly_damaging(0.602) TCGA-EE-A3AG-06 6 43639616 43639616 G A MRPS18A Silent p.S158S 0.44 TCGA-EE-A3AG-06 6 43639617 43639617 G A MRPS18A Missense_Mutation p.S158F 0.42 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AG-06 6 44199741 44199741 G A SLC29A1 Missense_Mutation p.V291I 0.42 tolerated(0.11) benign(0.02) TCGA-EE-A3AG-06 6 46851850 46851850 A C GPR116 Missense_Mutation p.F163V 0.33 deleterious(0.01) possibly_damaging(0.652) TCGA-EE-A3AG-06 6 47754355 47754355 G A OPN5 Missense_Mutation p.D79N 0.57 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AG-06 6 49754528 49754528 G A PGK2 Missense_Mutation p.H125Y 0.41 tolerated(0.14) benign(0.282) TCGA-EE-A3AG-06 6 52992897 52992897 G A GCM1 3'UTR 0.48 TCGA-EE-A3AG-06 6 54805566 54805566 C T FAM83B Silent p.I599I 0.48 TCGA-EE-A3AG-06 6 54805567 54805567 C T FAM83B Missense_Mutation p.P600S 0.48 tolerated(0.63) benign(0.007) TCGA-EE-A3AG-06 6 54806494 54806494 G A FAM83B Missense_Mutation p.E909K 0.48 tolerated(0.19) benign(0.118) TCGA-EE-A3AG-06 6 54806498 54806498 G A FAM83B Missense_Mutation p.R910K 0.44 tolerated(0.29) benign(0.11) TCGA-EE-A3AG-06 6 55659192 55659192 C T BMP5 Silent p.K239K 0.42 TCGA-EE-A3AG-06 6 6266913 6266913 G A F13A1 Missense_Mutation p.S150F 0.17 deleterious(0.04) probably_damaging(0.985) TCGA-EE-A3AG-06 6 70071332 70071332 C T BAI3 Silent p.A1389A 0.77 TCGA-EE-A3AG-06 6 7569434 7569434 G A DSP Missense_Mutation p.G479R 0.20 probably_damaging(1) TCGA-EE-A3AG-06 6 7581406 7581406 C T DSP Silent p.V1661V 0.42 TCGA-EE-A3AG-06 6 75855928 75855928 C T COL12A1 Missense_Mutation p.D1484N 0.81 benign(0.015) TCGA-EE-A3AG-06 6 7595265 7595265 G A SNRNP48 Missense_Mutation p.D113N 0.13 tolerated(0.11) benign(0.006) TCGA-EE-A3AG-06 6 7606287 7606287 C T SNRNP48 Missense_Mutation p.S277L 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 6 85470044 85470044 G A TBX18 Silent p.I176I 0.78 TCGA-EE-A3AG-06 7 100000181 100000181 G A ZCWPW1 Missense_Mutation p.R477C 0.18 tolerated(0.09) benign(0.001) TCGA-EE-A3AG-06 7 100229759 100229759 G A TFR2 Silent p.F304F 0.33 TCGA-EE-A3AG-06 7 100283657 100283657 G A GIGYF1 Nonsense_Mutation p.Q332* 0.18 TCGA-EE-A3AG-06 7 100391482 100391482 G A ZAN Intron 0.18 TCGA-EE-A3AG-06 7 100417782 100417782 G A EPHB4 Silent p.P315P 0.75 TCGA-EE-A3AG-06 7 100676940 100676940 C T MUC17 Missense_Mutation p.P748L 0.20 probably_damaging(0.999) TCGA-EE-A3AG-06 7 100679937 100679937 G A MUC17 Missense_Mutation p.G1747E 0.37 probably_damaging(1) TCGA-EE-A3AG-06 7 100732634 100732634 C T TRIM56 Missense_Mutation p.P681S 0.72 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 7 101844695 101844695 C T CUX1 Silent p.I717I 0.23 TCGA-EE-A3AG-06 7 102739066 102739066 G A ARMC10 3'UTR 0.18 TCGA-EE-A3AG-06 7 102824525 102824525 C T DPY19L2P2 RNA 0.13 TCGA-EE-A3AG-06 7 102956221 102956221 T C DNAJC2 Silent p.E542E 0.76 TCGA-EE-A3AG-06 7 104752740 104752740 G A KMT2E Missense_Mutation p.A1513T 0.70 tolerated_low_confidence(0.13) benign(0.066) TCGA-EE-A3AG-06 7 105205745 105205745 G A RINT1 Silent p.Q636Q 0.16 TCGA-EE-A3AG-06 7 106508517 106508517 G A PIK3CG Missense_Mutation p.D171N 0.16 tolerated(0.13) benign(0.05) TCGA-EE-A3AG-06 7 107408085 107408085 T G SLC26A3 Missense_Mutation p.K737T 0.73 tolerated(0.1) benign(0.221) TCGA-EE-A3AG-06 7 107601006 107601006 G A LAMB1 Missense_Mutation p.T733I 0.28 tolerated(0.06) benign(0.018) TCGA-EE-A3AG-06 7 107626734 107626734 G A LAMB1 Silent p.F166F 0.31 TCGA-EE-A3AG-06 7 113519373 113519373 C T PPP1R3A Missense_Mutation p.E592K 0.15 tolerated(0.13) benign(0.025) TCGA-EE-A3AG-06 7 113558349 113558349 C T PPP1R3A Missense_Mutation p.E235K 0.21 tolerated(0.15) benign(0.178) TCGA-EE-A3AG-06 7 119915781 119915781 C T KCND2 Silent p.I365I 0.13 TCGA-EE-A3AG-06 7 120590943 120590943 G A ING3 5'UTR 0.29 TCGA-EE-A3AG-06 7 120591193 120591193 C T ING3 Intron 0.78 TCGA-EE-A3AG-06 7 121612675 121612675 C T PTPRZ1 Missense_Mutation p.H129Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 7 122091457 122091457 G A CADPS2 Silent p.S753S 0.22 TCGA-EE-A3AG-06 7 122787360 122787360 G A SLC13A1 Missense_Mutation p.S222L 0.34 tolerated(0.2) benign(0.013) TCGA-EE-A3AG-06 7 123508568 123508568 A G HYAL4 Missense_Mutation p.K81E 0.69 tolerated(0.35) benign(0.016) TCGA-EE-A3AG-06 7 123594319 123594319 C T SPAM1 Missense_Mutation p.P232L 0.32 deleterious(0.02) benign(0.179) TCGA-EE-A3AG-06 7 123599999 123599999 C T SPAM1 Intron 0.23 TCGA-EE-A3AG-06 7 128483517 128483517 G A FLNC Silent p.K899K 0.32 TCGA-EE-A3AG-06 7 128845484 128845484 C T SMO Missense_Mutation p.R261C 0.31 deleterious(0) probably_damaging(0.982) TCGA-EE-A3AG-06 7 129987662 129987662 G A CPA5 Missense_Mutation p.D58N 0.20 tolerated(0.14) benign(0.006) TCGA-EE-A3AG-06 7 130007368 130007368 C T CPA5 Missense_Mutation p.P332S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 7 131817886 131817886 G A PLXNA4 Silent p.S1837S 0.21 TCGA-EE-A3AG-06 7 131870132 131870132 G A PLXNA4 Silent p.I1028I 0.20 TCGA-EE-A3AG-06 7 133002041 133002041 C T EXOC4 Silent p.S220S 0.15 TCGA-EE-A3AG-06 7 134221440 134221440 C T AKR1B10 Silent p.A156A 0.23 TCGA-EE-A3AG-06 7 136700447 136700447 G A CHRM2 Missense_Mutation p.E279K 0.23 tolerated(0.31) benign(0.192) TCGA-EE-A3AG-06 7 137284623 137284623 C T DGKI Nonsense_Mutation p.W399* 0.12 TCGA-EE-A3AG-06 7 137790090 137790090 C T AKR1D1 Missense_Mutation p.S165F 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 7 138591708 138591708 C T KIAA1549 Silent p.E1139E 0.30 TCGA-EE-A3AG-06 7 139724499 139724499 G A PARP12 Missense_Mutation p.S656F 0.11 deleterious(0) probably_damaging(0.94) TCGA-EE-A3AG-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.73 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AG-06 7 141385329 141385329 G A KIAA1147 Missense_Mutation p.P159L 0.13 tolerated(0.08) benign(0.026) TCGA-EE-A3AG-06 7 141536973 141536973 C T PRSS37 Missense_Mutation p.G169E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 7 141619558 141619558 G A OR9A4 Missense_Mutation p.D295N 0.72 tolerated(0.06) benign(0.12) TCGA-EE-A3AG-06 7 141673474 141673474 G A TAS2R38 Missense_Mutation p.R6C 0.14 deleterious_low_confidence(0) benign(0.083) TCGA-EE-A3AG-06 7 141747669 141747669 G A MGAM Silent p.T861T 0.38 TCGA-EE-A3AG-06 7 141752244 141752244 G A MGAM Missense_Mutation p.E986K 0.15 tolerated(0.16) benign(0.005) TCGA-EE-A3AG-06 7 141754673 141754673 G A MGAM Silent p.G1093G 0.16 TCGA-EE-A3AG-06 7 141759293 141759293 G A MGAM Missense_Mutation p.D1281N 0.36 tolerated(0.09) probably_damaging(0.981) TCGA-EE-A3AG-06 7 141760157 141760157 G A MGAM Nonsense_Mutation p.W1369* 0.15 TCGA-EE-A3AG-06 7 141763352 141763352 G A MGAM Silent p.R1437R 0.19 TCGA-EE-A3AG-06 7 141952364 141952364 G A PRSS58 Silent p.A168A 0.17 TCGA-EE-A3AG-06 7 142139743 142139743 C T TRBV7-6 Missense_Mutation p.V10I 0.76 tolerated(1) benign(0.025) TCGA-EE-A3AG-06 7 142457320 142457320 G A PRSS1 5'Flank 0.11 TCGA-EE-A3AG-06 7 142481149 142481149 G A PRSS3P2 RNA 1.00 TCGA-EE-A3AG-06 7 142566359 142566359 C T EPHB6 Silent p.F716F 0.22 TCGA-EE-A3AG-06 7 142640645 142640645 G A KEL Missense_Mutation p.S544L 0.77 tolerated(0.29) probably_damaging(0.959) TCGA-EE-A3AG-06 7 142749553 142749553 G A OR6V1 Missense_Mutation p.G39E 0.20 deleterious(0) probably_damaging(0.963) TCGA-EE-A3AG-06 7 143044022 143044022 G A CLCN1 Missense_Mutation p.D795N 0.70 tolerated(0.09) benign(0.342) TCGA-EE-A3AG-06 7 143047536 143047536 C T CLCN1 Silent p.P825P 0.81 TCGA-EE-A3AG-06 7 143054043 143054043 G A FAM131B Missense_Mutation p.S228L 0.21 tolerated(0.37) probably_damaging(0.998) TCGA-EE-A3AG-06 7 143095808 143095808 C T EPHA1 Missense_Mutation p.G408S 0.37 tolerated(0.05) probably_damaging(1) TCGA-EE-A3AG-06 7 143175679 143175679 C T TAS2R41 Silent p.S238S 0.37 TCGA-EE-A3AG-06 7 143175862 143175862 G A TAS2R41 Silent p.L299L 0.14 TCGA-EE-A3AG-06 7 143270225 143270225 G A CTAGE15 Missense_Mutation p.D439N 0.13 deleterious(0) probably_damaging(0.94) TCGA-EE-A3AG-06 7 143657981 143657981 G A OR2F1 Nonsense_Mutation p.W306* 0.77 TCGA-EE-A3AG-06 7 143807053 143807053 C T OR2A2 Silent p.C126C 0.20 TCGA-EE-A3AG-06 7 144098256 144098256 G A NOBOX Missense_Mutation p.H243Y 0.71 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AG-06 7 144364881 144364881 C T TPK1 Intron 0.66 TCGA-EE-A3AG-06 7 1482056 1482056 G A MICALL2 Missense_Mutation p.P495S 0.34 tolerated(0.13) benign(0.354) TCGA-EE-A3AG-06 7 148863939 148863939 C T ZNF398 Missense_Mutation p.S193F 0.75 deleterious(0) possibly_damaging(0.665) TCGA-EE-A3AG-06 7 150164227 150164227 C T GIMAP8 Silent p.F147F 0.85 TCGA-EE-A3AG-06 7 150325570 150325570 C T GIMAP6 Missense_Mutation p.R39K 0.70 tolerated(0.72) benign(0.003) TCGA-EE-A3AG-06 7 19015469 19015469 G A HDAC9 Silent p.R1021R 0.31 TCGA-EE-A3AG-06 7 20698167 20698167 G A ABCB5 Missense_Mutation p.M525I 0.46 deleterious(0) benign(0.089) TCGA-EE-A3AG-06 7 21657337 21657337 A C DNAH11 Missense_Mutation p.E1404A 0.48 possibly_damaging(0.759) TCGA-EE-A3AG-06 7 21942717 21942717 G A CDCA7L Missense_Mutation p.P405S 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AG-06 7 22259571 22259571 C T RAPGEF5 Missense_Mutation p.G151R 0.34 deleterious(0.02) benign(0.139) TCGA-EE-A3AG-06 7 2638195 2638195 C T IQCE Missense_Mutation p.P513S 0.49 tolerated(0.66) benign(0) TCGA-EE-A3AG-06 7 2749363 2749363 G A AMZ1 Silent p.E287E 0.44 TCGA-EE-A3AG-06 7 28452443 28452443 G A CREB5 5'UTR 0.48 TCGA-EE-A3AG-06 7 29966239 29966239 G T SCRN1 Missense_Mutation p.F325L 0.41 deleterious(0) benign(0.17) TCGA-EE-A3AG-06 7 35288414 35288414 C T TBX20 Silent p.V140V 0.38 TCGA-EE-A3AG-06 7 37916593 37916593 C T NME8 Silent p.L326L 0.44 TCGA-EE-A3AG-06 7 38433665 38433665 G A AMPH Silent p.T516T 0.43 TCGA-EE-A3AG-06 7 4051763 4051763 G A SDK1 Silent p.P772P 0.45 TCGA-EE-A3AG-06 7 44283092 44283092 C T CAMK2B Missense_Mutation p.G150E 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A3AG-06 7 44323761 44323761 C T CAMK2B Silent p.K43K 0.36 TCGA-EE-A3AG-06 7 44714019 44714019 G A OGDH Silent p.E266E 0.50 TCGA-EE-A3AG-06 7 45115679 45115679 C T CCM2 3'UTR 0.49 TCGA-EE-A3AG-06 7 45632475 45632475 C T ADCY1 Nonsense_Mutation p.R253* 0.51 TCGA-EE-A3AG-06 7 45743207 45743207 C T ADCY1 Silent p.Y860Y 0.45 TCGA-EE-A3AG-06 7 47408318 47408318 G A TNS3 Missense_Mutation p.A642V 0.38 deleterious(0.02) benign(0.053) TCGA-EE-A3AG-06 7 4900726 4900726 G A PAPOLB Missense_Mutation p.S238F 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 7 53104243 53104243 C T POM121L12 Silent p.P293P 0.43 TCGA-EE-A3AG-06 7 5428882 5428882 G A TNRC18 Silent p.S191S 0.35 TCGA-EE-A3AG-06 7 55266528 55266528 C T EGFR Silent p.T940T 0.48 TCGA-EE-A3AG-06 7 55560112 55560112 C T VOPP1 Splice_Site p.X64_splice 0.26 TCGA-EE-A3AG-06 7 55588791 55588791 G A VOPP1 Silent p.F29F 0.44 TCGA-EE-A3AG-06 7 5568857 5568857 C T ACTB Missense_Mutation p.E100K 0.47 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-EE-A3AG-06 7 6084289 6084289 G A EIF2AK1 Silent p.L212L 0.44 TCGA-EE-A3AG-06 7 62752709 62752709 C T ZNF733P RNA 0.49 TCGA-EE-A3AG-06 7 64453431 64453431 G A ERV3-1 5'UTR 0.32 TCGA-EE-A3AG-06 7 66410104 66410104 C T TMEM248 Missense_Mutation p.P101S 0.39 deleterious(0.04) probably_damaging(0.964) TCGA-EE-A3AG-06 7 70800709 70800709 C T WBSCR17 Missense_Mutation p.R138C 0.31 deleterious(0) benign(0.412) TCGA-EE-A3AG-06 7 72411440 72411440 C T POM121 Missense_Mutation p.S319F 0.49 tolerated(0.09) benign(0.036) TCGA-EE-A3AG-06 7 73107951 73107951 C T WBSCR22 Intron 0.32 TCGA-EE-A3AG-06 7 73108352 73108352 C T WBSCR22 Missense_Mutation p.P225S 0.20 tolerated(0.59) benign(0.08) TCGA-EE-A3AG-06 7 73108353 73108353 C T WBSCR22 Missense_Mutation p.P225L 0.19 tolerated(0.23) benign(0.077) TCGA-EE-A3AG-06 7 73477977 73477977 G A ELN Missense_Mutation p.G649R 0.30 unknown(0) TCGA-EE-A3AG-06 7 75052288 75052288 G A POM121C Missense_Mutation p.T416I 0.70 deleterious(0.01) benign(0.035) TCGA-EE-A3AG-06 7 76112063 76112063 C T DTX2 Silent p.C169C 0.36 TCGA-EE-A3AG-06 7 7676679 7676679 G A RPA3 Silent p.I106I 0.40 TCGA-EE-A3AG-06 7 76924180 76924180 C T CCDC146 Silent p.I955I 0.30 TCGA-EE-A3AG-06 7 8178486 8178486 C T ICA1 Missense_Mutation p.M348I 0.48 tolerated(0.3) benign(0.001) TCGA-EE-A3AG-06 7 82451749 82451749 G A PCLO Intron 0.65 TCGA-EE-A3AG-06 7 82451921 82451921 C T PCLO Missense_Mutation p.G4894E 0.75 unknown(0) TCGA-EE-A3AG-06 7 82476562 82476562 C T PCLO Silent p.G4552G 0.75 TCGA-EE-A3AG-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.76 unknown(0) TCGA-EE-A3AG-06 7 82545449 82545449 C T PCLO Silent p.Q3951Q 0.18 TCGA-EE-A3AG-06 7 82579186 82579186 G A PCLO Missense_Mutation p.S3573L 0.46 unknown(0) TCGA-EE-A3AG-06 7 82584101 82584101 C T PCLO Silent p.R2056R 0.14 TCGA-EE-A3AG-06 7 87175237 87175237 C T ABCB1 Missense_Mutation p.G610E 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 7 89891300 89891300 C T C7orf63 Silent p.L96L 0.20 TCGA-EE-A3AG-06 7 91714954 91714954 C T AKAP9 Missense_Mutation p.S2993F 0.34 possibly_damaging(0.872) TCGA-EE-A3AG-06 7 92731876 92731876 C T SAMD9 Missense_Mutation p.E1179K 0.72 tolerated(0.43) benign(0.113) TCGA-EE-A3AG-06 7 94049548 94049548 G A COL1A2 Missense_Mutation p.E695K 0.22 unknown(0) TCGA-EE-A3AG-06 7 94539422 94539422 G A PPP1R9A 5'UTR 0.14 TCGA-EE-A3AG-06 7 94928282 94928282 G A PON1 Missense_Mutation p.H348Y 0.14 deleterious(0) benign(0.202) TCGA-EE-A3AG-06 7 98249027 98249027 G A NPTX2 Missense_Mutation p.G167R 0.33 deleterious(0.03) benign(0.03) TCGA-EE-A3AG-06 7 99905580 99905580 G A SPDYE3 Silent p.Q24Q 0.70 TCGA-EE-A3AG-06 8 101733795 101733795 G A PABPC1 Missense_Mutation p.P6L 0.60 deleterious(0.01) benign(0.288) TCGA-EE-A3AG-06 8 102701627 102701627 G A NCALD Silent p.L164L 0.45 TCGA-EE-A3AG-06 8 104897612 104897612 C T RIMS2 Missense_Mutation p.S262L 0.39 tolerated_low_confidence(0.09) benign(0.216) TCGA-EE-A3AG-06 8 104922429 104922429 G A RIMS2 Silent p.L564L 0.30 TCGA-EE-A3AG-06 8 105257214 105257214 G A RIMS2 Silent p.R1135R 0.55 TCGA-EE-A3AG-06 8 105261730 105261730 G A RIMS2 Missense_Mutation p.G1202E 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AG-06 8 10892744 10892744 G A XKR6 Intron 0.64 TCGA-EE-A3AG-06 8 109796737 109796737 G A TMEM74 Silent p.I197I 0.29 TCGA-EE-A3AG-06 8 110100064 110100064 G A TRHR Missense_Mutation p.G108E 0.63 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 8 110464991 110464991 C T PKHD1L1 Silent p.F2184F 0.44 TCGA-EE-A3AG-06 8 113529379 113529379 C T CSMD3 Missense_Mutation p.G1547E 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AG-06 8 114326957 114326957 G A CSMD3 Missense_Mutation p.P82S 0.31 deleterious(0) benign(0.369) TCGA-EE-A3AG-06 8 116631597 116631597 C T TRPS1 Missense_Mutation p.G243D 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AG-06 8 118165314 118165314 G A SLC30A8 Missense_Mutation p.G135R 0.28 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AG-06 8 119945254 119945254 C T TNFRSF11B Missense_Mutation p.E106K 0.32 deleterious(0) possibly_damaging(0.608) TCGA-EE-A3AG-06 8 125551344 125551344 C T TATDN1 5'Flank 0.21 TCGA-EE-A3AG-06 8 125565768 125565768 C T MTSS1 Missense_Mutation p.G578E 0.32 tolerated(0.15) probably_damaging(1) TCGA-EE-A3AG-06 8 125988914 125988914 C T ZNF572 Missense_Mutation p.S135F 0.54 tolerated(0.5) benign(0.005) TCGA-EE-A3AG-06 8 12878918 12878918 G A KIAA1456 Missense_Mutation p.G244R 0.22 deleterious(0) probably_damaging(0.957) TCGA-EE-A3AG-06 8 128972912 128972912 C T MIR1205 RNA 0.22 TCGA-EE-A3AG-06 8 134042158 134042158 C T TG Missense_Mutation p.P2377S 0.23 tolerated(0.06) probably_damaging(0.951) TCGA-EE-A3AG-06 8 134233063 134233063 C T WISP1 Missense_Mutation p.P197S 0.23 tolerated(0.35) benign(0.24) TCGA-EE-A3AG-06 8 134296509 134296509 A G NDRG1 Silent p.L16L 0.25 TCGA-EE-A3AG-06 8 139323149 139323149 C T FAM135B Missense_Mutation p.R31Q 0.33 deleterious(0.01) benign(0.044) TCGA-EE-A3AG-06 8 139380153 139380153 C T FAM135B Missense_Mutation p.R25K 0.24 deleterious(0.01) possibly_damaging(0.783) TCGA-EE-A3AG-06 8 139603680 139603680 G A COL22A1 Silent p.P1560P 0.32 TCGA-EE-A3AG-06 8 139626126 139626126 C T COL22A1 Missense_Mutation p.G1321E 0.22 unknown(0) TCGA-EE-A3AG-06 8 139729076 139729076 C T COL22A1 Missense_Mutation p.G798R 0.61 probably_damaging(1) TCGA-EE-A3AG-06 8 139833474 139833474 G A COL22A1 Silent p.L384L 0.28 TCGA-EE-A3AG-06 8 14181688 14181688 G A SGCZ Missense_Mutation p.T87I 0.54 tolerated(0.07) possibly_damaging(0.563) TCGA-EE-A3AG-06 8 142486025 142486025 C T MROH5 Intron 0.23 TCGA-EE-A3AG-06 8 142505528 142505528 C T MROH5 Silent p.K71K 0.36 TCGA-EE-A3AG-06 8 143822687 143822687 G A SLURP1 Silent p.P62P 0.28 TCGA-EE-A3AG-06 8 143958196 143958196 G A CYP11B1 Missense_Mutation p.T234I 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 8 144681846 144681846 C T TIGD5 Silent p.A591A 0.59 TCGA-EE-A3AG-06 8 144687954 144687954 G A PYCRL Silent p.A259A 0.29 TCGA-EE-A3AG-06 8 144942631 144942631 C T EPPK1 Silent p.R1597R 0.54 TCGA-EE-A3AG-06 8 145109474 145109474 G A OPLAH Silent p.F892F 0.42 TCGA-EE-A3AG-06 8 145111949 145111949 G A OPLAH Silent p.S536S 0.24 TCGA-EE-A3AG-06 8 145649612 145649612 G A VPS28 Missense_Mutation p.R148C 0.23 deleterious(0) probably_damaging(0.969) TCGA-EE-A3AG-06 8 145692696 145692696 C T KIFC2 Silent p.A147A 0.63 TCGA-EE-A3AG-06 8 145692697 145692697 C T KIFC2 Missense_Mutation p.P148S 0.62 tolerated_low_confidence(0.9) benign(0.001) TCGA-EE-A3AG-06 8 145947718 145947718 G A ZNF251 Missense_Mutation p.R443C 0.34 deleterious(0) benign(0.001) TCGA-EE-A3AG-06 8 17053131 17053131 G A ZDHHC2 Missense_Mutation p.G124E 0.63 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AG-06 8 17417987 17417987 C T SLC7A2 Silent p.S523S 0.20 TCGA-EE-A3AG-06 8 17417988 17417988 C T SLC7A2 Missense_Mutation p.L524F 0.21 tolerated(0.73) benign(0.009) TCGA-EE-A3AG-06 8 22033822 22033822 C T BMP1 Silent p.F143F 0.25 TCGA-EE-A3AG-06 8 22147395 22147395 G A PIWIL2 Missense_Mutation p.R341K 0.44 deleterious(0.03) possibly_damaging(0.742) TCGA-EE-A3AG-06 8 22675180 22675180 G A PEBP4 Silent p.F109F 0.58 TCGA-EE-A3AG-06 8 22969277 22969277 C T TNFRSF10C Silent p.P35P 0.34 TCGA-EE-A3AG-06 8 24251634 24251634 G A ADAMDEC1 Missense_Mutation p.E113K 0.32 tolerated(0.2) benign(0.032) TCGA-EE-A3AG-06 8 24256963 24256963 C T ADAMDEC1 Silent p.S329S 0.24 TCGA-EE-A3AG-06 8 24257714 24257714 G A ADAMDEC1 Missense_Mutation p.G348E 0.62 deleterious(0) probably_damaging(0.979) TCGA-EE-A3AG-06 8 24811210 24811210 G A CTD-2168K21.2 5'Flank 0.37 TCGA-EE-A3AG-06 8 26623662 26623662 C T ADRA1A Intron 0.14 TCGA-EE-A3AG-06 8 26623663 26623663 C T ADRA1A Intron 0.14 TCGA-EE-A3AG-06 8 30705720 30705720 G A TEX15 Missense_Mutation p.P272S 0.22 tolerated(0.17) probably_damaging(0.911) TCGA-EE-A3AG-06 8 3165994 3165994 G T CSMD1 Silent p.G1221G 0.22 TCGA-EE-A3AG-06 8 3253824 3253824 G A CSMD1 Missense_Mutation p.H829Y 0.35 possibly_damaging(0.767) TCGA-EE-A3AG-06 8 33451117 33451117 A T DUSP26 Missense_Mutation p.F124I 0.14 deleterious(0) probably_damaging(0.958) TCGA-EE-A3AG-06 8 38275752 38275752 C T FGFR1 Missense_Mutation p.R506Q 0.52 deleterious(0) possibly_damaging(0.537) TCGA-EE-A3AG-06 8 39080710 39080710 G A ADAM32 Missense_Mutation p.G493E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AG-06 8 39466628 39466628 C T ADAM18 Missense_Mutation p.P86S 0.27 tolerated(1) benign(0.003) TCGA-EE-A3AG-06 8 39564414 39564414 C T ADAM18 Nonsense_Mutation p.Q670* 0.41 TCGA-EE-A3AG-06 8 39604031 39604031 G A ADAM2 Nonsense_Mutation p.Q712* 0.41 TCGA-EE-A3AG-06 8 39678582 39678582 G A ADAM2 Missense_Mutation p.S151F 0.36 tolerated(0.65) benign(0.032) TCGA-EE-A3AG-06 8 41122947 41122947 C T SFRP1 Silent p.K228K 0.32 TCGA-EE-A3AG-06 8 41470463 41470463 C T AGPAT6 Missense_Mutation p.H299Y 0.36 tolerated(0.1) benign(0.066) TCGA-EE-A3AG-06 8 42024823 42024823 C T AP3M2 Silent p.P315P 0.29 TCGA-EE-A3AG-06 8 42608256 42608256 C T CHRNA6 3'UTR 0.48 TCGA-EE-A3AG-06 8 42698284 42698284 G A THAP1 5'UTR 0.29 TCGA-EE-A3AG-06 8 42958684 42958684 C T POMK 5'UTR 0.42 TCGA-EE-A3AG-06 8 442449 442449 G A TDRP Intron 0.62 TCGA-EE-A3AG-06 8 48839794 48839794 G T PRKDC Silent p.L793L 0.33 TCGA-EE-A3AG-06 8 51617306 51617306 G A SNTG1 Silent p.R395R 0.42 TCGA-EE-A3AG-06 8 53044633 53044633 G A ST18 Missense_Mutation p.P851S 0.39 tolerated(0.6) benign(0.025) TCGA-EE-A3AG-06 8 53079445 53079445 C G ST18 Missense_Mutation p.G391R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 8 55540655 55540655 G A RP1 Missense_Mutation p.E1405K 0.29 tolerated(0.9) benign(0.003) TCGA-EE-A3AG-06 8 61178606 61178606 G A CA8 Missense_Mutation p.L99F 0.37 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A3AG-06 8 61655051 61655051 C T CHD7 Missense_Mutation p.P354S 0.59 possibly_damaging(0.641) TCGA-EE-A3AG-06 8 62489366 62489366 G A ASPH Missense_Mutation p.P372S 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A3AG-06 8 62489367 62489367 G A ASPH Silent p.Y371Y 0.42 TCGA-EE-A3AG-06 8 69552622 69552622 G A C8orf34 Missense_Mutation p.D373N 0.48 tolerated(0.1) benign(0.23) TCGA-EE-A3AG-06 8 70585174 70585174 G A SLCO5A1 Missense_Mutation p.P826L 0.45 tolerated_low_confidence(0.25) benign(0.002) TCGA-EE-A3AG-06 8 70667783 70667783 T A SLCO5A1 Missense_Mutation p.K378N 0.37 deleterious(0.01) benign(0.216) TCGA-EE-A3AG-06 8 73848625 73848625 G A KCNB2 Silent p.G345G 0.35 TCGA-EE-A3AG-06 8 73982117 73982117 C T SBSPON Silent p.T200T 0.61 TCGA-EE-A3AG-06 8 75756215 75756215 G A PI15 Splice_Site p.X92_splice 0.51 TCGA-EE-A3AG-06 8 77764907 77764907 G A ZFHX4 Missense_Mutation p.G1917D 0.45 probably_damaging(0.969) TCGA-EE-A3AG-06 8 80962685 80962685 G A TPD52 Intron 0.59 TCGA-EE-A3AG-06 8 80962686 80962686 G A TPD52 Intron 0.59 TCGA-EE-A3AG-06 8 8176519 8176519 G A SGK223 Silent p.F1122F 0.57 TCGA-EE-A3AG-06 8 81888983 81888983 G A PAG1 Silent p.F365F 0.30 TCGA-EE-A3AG-06 8 8234162 8234162 G A SGK223 Missense_Mutation p.P586L 0.67 benign(0.002) TCGA-EE-A3AG-06 8 86180738 86180738 C T CA13 Missense_Mutation p.S184F 0.50 deleterious(0.04) benign(0.295) TCGA-EE-A3AG-06 8 86241982 86241982 G C CA1 Missense_Mutation p.P202R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 8 87683209 87683209 C T CNGB3 Silent p.E152E 0.49 TCGA-EE-A3AG-06 8 87917317 87917317 T A CNBD1 Missense_Mutation p.M56K 0.27 tolerated(0.29) benign(0) TCGA-EE-A3AG-06 8 93029550 93029550 C T RUNX1T1 Missense_Mutation p.D55N 0.49 deleterious(0.02) possibly_damaging(0.809) TCGA-EE-A3AG-06 8 95778881 95778881 C T DPY19L4 Silent p.F381F 0.46 TCGA-EE-A3AG-06 9 100194381 100194381 C T TDRD7 Missense_Mutation p.P142S 0.84 tolerated(0.62) benign(0.005) TCGA-EE-A3AG-06 9 100897226 100897226 C T CORO2A Nonsense_Mutation p.W110* 0.90 TCGA-EE-A3AG-06 9 107361416 107361416 G A OR13C5 Silent p.S93S 0.88 TCGA-EE-A3AG-06 9 107361417 107361417 G A OR13C5 Missense_Mutation p.S93F 0.88 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3AG-06 9 109694806 109694806 C T ZNF462 Missense_Mutation p.S2031L 0.97 benign(0.352) TCGA-EE-A3AG-06 9 111617744 111617744 G A ACTL7B Missense_Mutation p.P156L 0.94 deleterious(0.01) possibly_damaging(0.691) TCGA-EE-A3AG-06 9 113169739 113169739 G A SVEP1 Missense_Mutation p.S2714L 0.87 probably_damaging(0.928) TCGA-EE-A3AG-06 9 114089881 114089881 C T OR2K2 Missense_Mutation p.G278E 0.90 deleterious(0.01) possibly_damaging(0.781) TCGA-EE-A3AG-06 9 114090351 114090351 G A OR2K2 Silent p.D121D 0.82 TCGA-EE-A3AG-06 9 115421780 115421780 C T KIAA1958 Missense_Mutation p.R528C 0.87 tolerated(0.05) benign(0.297) TCGA-EE-A3AG-06 9 115940928 115940928 C T FKBP15 Missense_Mutation p.V690M 0.92 deleterious(0.03) benign(0.07) TCGA-EE-A3AG-06 9 116854270 116854270 C T KIF12 Silent p.G471G 0.93 TCGA-EE-A3AG-06 9 117051536 117051536 C T COL27A1 Silent p.P1389P 0.80 TCGA-EE-A3AG-06 9 120475851 120475851 C T TLR4 Missense_Mutation p.S482F 0.88 tolerated(0.07) benign(0.433) TCGA-EE-A3AG-06 9 123914842 123914842 C T CNTRL Missense_Mutation p.S1348F 0.86 benign(0.013) TCGA-EE-A3AG-06 9 125140259 125140259 C T PTGS1 Missense_Mutation p.T59I 0.91 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 9 125512186 125512186 C T OR1L6 Silent p.S20S 0.83 TCGA-EE-A3AG-06 9 127298251 127298251 G A NR6A1 Silent p.L329L 0.86 TCGA-EE-A3AG-06 9 129143402 129143402 C T MVB12B Silent p.S88S 0.86 TCGA-EE-A3AG-06 9 129154430 129154430 C T MVB12B Silent p.I165I 0.86 TCGA-EE-A3AG-06 9 129158038 129158038 A G MVB12B Intron 0.83 TCGA-EE-A3AG-06 9 130536329 130536329 G A SH2D3C Missense_Mutation p.P152L 0.82 tolerated(0.09) benign(0.001) TCGA-EE-A3AG-06 9 131745768 131745768 C T NUP188 Missense_Mutation p.R634C 0.83 deleterious(0.01) possibly_damaging(0.79) TCGA-EE-A3AG-06 9 134038512 134038512 C T NUP214 Missense_Mutation p.S892F 0.87 benign(0.022) TCGA-EE-A3AG-06 9 135254449 135254449 G A TTF1 Missense_Mutation p.P821S 0.77 tolerated(0.23) benign(0.05) TCGA-EE-A3AG-06 9 135266135 135266135 G A TTF1 Missense_Mutation p.P691S 0.82 tolerated(0.09) benign(0.024) TCGA-EE-A3AG-06 9 135974232 135974232 G A RALGDS Intron 0.88 TCGA-EE-A3AG-06 9 136505099 136505099 G A DBH Silent p.K157K 0.90 TCGA-EE-A3AG-06 9 139262131 139262131 C T CARD9 Silent p.V409V 0.86 TCGA-EE-A3AG-06 9 139390979 139390979 C T NOTCH1 Silent p.Q2404Q 0.93 TCGA-EE-A3AG-06 9 139905466 139905466 G A ABCA2 Silent p.L2005L 0.81 TCGA-EE-A3AG-06 9 21077570 21077570 C T IFNB1 Nonsense_Mutation p.W100* 0.88 TCGA-EE-A3AG-06 9 21974715 21974732 GCAGCGCCCCCGCCTCCA - CDKN2A In_Frame_Del p.L32_L37del 0.55 TCGA-EE-A3AG-06 9 32784861 32784861 G A TMEM215 Missense_Mutation p.G227D 0.89 deleterious(0.04) possibly_damaging(0.732) TCGA-EE-A3AG-06 9 3330308 3330309 - ACCAGAATTCTCCATTGAGTT RFX3 Nonsense_Mutation p.E142_N143insLNGEFW* 0.09 TCGA-EE-A3AG-06 9 35044082 35044082 G A C9orf131 Missense_Mutation p.G486S 0.86 tolerated(0.38) benign(0.04) TCGA-EE-A3AG-06 9 35749281 35749281 G A RGP1 5'Flank 0.90 TCGA-EE-A3AG-06 9 37521630 37521630 G C FBXO10 Missense_Mutation p.D712E 0.76 tolerated(0.32) benign(0.012) TCGA-EE-A3AG-06 9 37955894 37955894 G A SHB Silent p.P404P 0.90 TCGA-EE-A3AG-06 9 40773090 40773090 G A ZNF658 Missense_Mutation p.L729F 0.82 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A3AG-06 9 4286371 4286371 C T GLIS3 Missense_Mutation p.G19R 0.94 tolerated_low_confidence(0.17) benign(0.058) TCGA-EE-A3AG-06 9 71549895 71549895 G A PIP5K1B Missense_Mutation p.E431K 0.64 tolerated(0.17) benign(0.004) TCGA-EE-A3AG-06 9 71555568 71555568 G A PIP5K1B Missense_Mutation p.G455E 0.89 deleterious(0.02) benign(0.101) TCGA-EE-A3AG-06 9 72055996 72055996 G A APBA1 Silent p.I739I 0.88 TCGA-EE-A3AG-06 9 78804657 78804657 A G PCSK5 Missense_Mutation p.K874R 0.87 deleterious(0.01) probably_damaging(0.951) TCGA-EE-A3AG-06 9 90499983 90499983 C T SPATA31E1 Missense_Mutation p.P194L 0.78 tolerated(0.32) possibly_damaging(0.514) TCGA-EE-A3AG-06 9 91666967 91666967 G A SHC3 Missense_Mutation p.P316L 0.88 tolerated(0.35) possibly_damaging(0.558) TCGA-EE-A3AG-06 9 94171570 94171570 G A NFIL3 3'UTR 0.84 TCGA-EE-A3AG-06 9 94499761 94499761 C T ROR2 Silent p.R178R 0.89 TCGA-EE-A3AG-06 9 94499762 94499762 C T ROR2 Missense_Mutation p.R178Q 0.91 tolerated(0.09) benign(0.087) TCGA-EE-A3AG-06 9 94499787 94499787 C T ROR2 Missense_Mutation p.E170K 0.86 tolerated(0.13) benign(0.009) TCGA-EE-A3AG-06 9 96055405 96055405 G A WNK2 Silent p.S1923S 1.00 TCGA-EE-A3AG-06 9 96860102 96860102 C T PTPDC1 Silent p.S416S 0.90 TCGA-EE-A3AG-06 9 99521932 99521932 G A ZNF510 Missense_Mutation p.R394C 0.84 tolerated(0.23) benign(0.001) TCGA-EE-A3AG-06 9 99711920 99711920 A C HIATL2 Silent p.S104S 0.72 TCGA-EE-A3AG-06 X 101096486 101096486 C T NXF5 Silent p.K95K 0.87 TCGA-EE-A3AG-06 X 101382330 101382330 G A TCEAL2 Silent p.R176R 0.90 TCGA-EE-A3AG-06 X 104464876 104464876 C T TEX13A Nonsense_Mutation p.W69* 0.71 TCGA-EE-A3AG-06 X 106144060 106144060 C G RIPPLY1 Missense_Mutation p.Q125H 0.83 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 X 106171786 106171786 G A CLDN2 Missense_Mutation p.E110K 0.91 deleterious(0.04) benign(0.158) TCGA-EE-A3AG-06 X 107310195 107310195 A G VSIG1 Silent p.V117V 0.96 TCGA-EE-A3AG-06 X 107331010 107331010 G A PSMD10 Missense_Mutation p.R145W 0.86 deleterious(0.02) benign(0.42) TCGA-EE-A3AG-06 X 110507123 110507123 C T CAPN6 Silent p.Q14Q 0.84 TCGA-EE-A3AG-06 X 11139886 11139886 G A HCCS Missense_Mutation p.V255I 0.96 tolerated(0.45) benign(0.074) TCGA-EE-A3AG-06 X 117043651 117043651 C T KLHL13 Missense_Mutation p.V330I 0.91 tolerated(0.35) benign(0.023) TCGA-EE-A3AG-06 X 119513344 119513344 C T ATP1B4 Missense_Mutation p.P310L 0.87 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 X 123839007 123839007 G A TENM1 Missense_Mutation p.P291S 0.82 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3AG-06 X 129629636 129629636 G A RP1-274L7.1 Intron 0.86 TCGA-EE-A3AG-06 X 135956521 135956521 C T RBMX Missense_Mutation p.G319E 0.26 deleterious(0.04) benign(0.008) TCGA-EE-A3AG-06 X 136652309 136652309 G A ZIC3 3'UTR 0.82 TCGA-EE-A3AG-06 X 139865906 139865906 G A CDR1 Missense_Mutation p.S209F 0.87 tolerated(0.06) possibly_damaging(0.683) TCGA-EE-A3AG-06 X 140336564 140336564 C T SPANXC Silent p.G9G 0.84 TCGA-EE-A3AG-06 X 140953310 140953310 G A MAGEC3 Silent p.L59L 0.78 TCGA-EE-A3AG-06 X 140969501 140969501 G A MAGEC3 Silent p.L276L 0.85 TCGA-EE-A3AG-06 X 140994871 140994871 C T MAGEC1 Missense_Mutation p.P561S 0.81 tolerated_low_confidence(0.52) possibly_damaging(0.641) TCGA-EE-A3AG-06 X 140995998 140995998 G A MAGEC1 Silent p.T936T 0.84 TCGA-EE-A3AG-06 X 1428571 1428571 G A CSF2RA 3'UTR 0.77 TCGA-EE-A3AG-06 X 1428572 1428572 G A CSF2RA 3'UTR 0.77 TCGA-EE-A3AG-06 X 144905507 144905507 A G SLITRK2 Missense_Mutation p.I522V 0.81 tolerated(1) benign(0.003) TCGA-EE-A3AG-06 X 149912857 149912857 C T MTMR1 Missense_Mutation p.H492Y 0.87 tolerated(0.07) benign(0.019) TCGA-EE-A3AG-06 X 150832763 150832763 G A PASD1 Missense_Mutation p.M338I 1.00 tolerated(0.63) benign(0.089) TCGA-EE-A3AG-06 X 152936627 152936627 G A PNCK Silent p.P294P 0.76 TCGA-EE-A3AG-06 X 153037634 153037634 C A PLXNB3 Intron 0.92 TCGA-EE-A3AG-06 X 153130444 153130444 C T L1CAM Missense_Mutation p.E960K 0.87 tolerated(0.74) benign(0.01) TCGA-EE-A3AG-06 X 153135651 153135651 G A L1CAM Missense_Mutation p.P284L 0.90 tolerated(0.18) benign(0.05) TCGA-EE-A3AG-06 X 154133156 154133156 T C F8 Missense_Mutation p.Q1839R 0.88 tolerated(0.84) benign(0.071) TCGA-EE-A3AG-06 X 154182201 154182201 C T F8 Silent p.E623E 0.91 TCGA-EE-A3AG-06 X 15477785 15477785 A G PIR Silent p.L90L 0.87 TCGA-EE-A3AG-06 X 15610379 15610379 G A ACE2 Missense_Mutation p.P138S 0.95 tolerated(0.1) benign(0.02) TCGA-EE-A3AG-06 X 17768160 17768160 C T SCML1 Silent p.S150S 0.92 TCGA-EE-A3AG-06 X 18276309 18276309 G A SCML2 Silent p.I376I 0.92 TCGA-EE-A3AG-06 X 19410163 19410163 C T MAP3K15 Silent p.S796S 1.00 TCGA-EE-A3AG-06 X 19713846 19713846 C T SH3KBP1 Nonsense_Mutation p.W135* 0.95 TCGA-EE-A3AG-06 X 205506 205506 C T PLCXD1 Silent p.R78R 0.77 TCGA-EE-A3AG-06 X 3030285 3030285 C T ARSF Silent p.V487V 0.92 TCGA-EE-A3AG-06 X 30578385 30578385 C T CXorf21 Missense_Mutation p.E30K 1.00 tolerated(0.33) benign(0.009) TCGA-EE-A3AG-06 X 31222096 31222096 G A DMD Silent p.V3263V 0.97 TCGA-EE-A3AG-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.90 deleterious(0.02) benign(0.166) TCGA-EE-A3AG-06 X 3241568 3241568 G A MXRA5 Nonsense_Mutation p.Q720* 0.97 TCGA-EE-A3AG-06 X 3241569 3241569 G A MXRA5 Silent p.D719D 0.97 TCGA-EE-A3AG-06 X 34961603 34961603 C T FAM47B Missense_Mutation p.R219W 0.91 deleterious(0.04) possibly_damaging(0.901) TCGA-EE-A3AG-06 X 34961628 34961628 C T FAM47B Missense_Mutation p.P227L 0.92 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A3AG-06 X 35985752 35985752 C T CXorf22 Silent p.I539I 0.79 TCGA-EE-A3AG-06 X 37850232 37850232 C T CXorf27 Missense_Mutation p.S47F 0.85 tolerated(0.12) benign(0.038) TCGA-EE-A3AG-06 X 43817901 43817901 G A NDP 5'UTR 0.90 TCGA-EE-A3AG-06 X 47039676 47039676 C T RBM10 Silent p.T376T 1.00 TCGA-EE-A3AG-06 X 48887358 48887358 G A TFE3 3'UTR 0.78 TCGA-EE-A3AG-06 X 53966798 53966798 G A PHF8 Missense_Mutation p.P970L 1.00 deleterious(0.02) benign(0.212) TCGA-EE-A3AG-06 X 54022212 54022212 G A PHF8 Silent p.L449L 0.81 TCGA-EE-A3AG-06 X 65486392 65486392 C T HEPH Missense_Mutation p.L1173F 0.97 deleterious_low_confidence(0.04) possibly_damaging(0.878) TCGA-EE-A3AG-06 X 67333082 67333082 C T OPHN1 Splice_Site p.X454_splice 0.89 TCGA-EE-A3AG-06 X 73041479 73041479 C A XIST RNA 1.00 TCGA-EE-A3AG-06 X 73046495 73046495 C T XIST RNA 0.91 TCGA-EE-A3AG-06 X 73046552 73046552 C T XIST RNA 0.87 TCGA-EE-A3AG-06 X 73962753 73962753 G A KIAA2022 Missense_Mutation p.R547C 0.88 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 X 77528216 77528216 G A CYSLTR1 3'UTR 0.71 TCGA-EE-A3AG-06 X 77913819 77913819 G A ZCCHC5 Silent p.L33L 0.81 TCGA-EE-A3AG-06 X 78011239 78011239 C T LPAR4 Silent p.I291I 0.95 TCGA-EE-A3AG-06 X 78217092 78217092 C T P2RY10 3'UTR 0.83 TCGA-EE-A3AG-06 X 78426883 78426883 C T GPR174 Missense_Mutation p.H127Y 0.80 deleterious(0.01) benign(0.121) TCGA-EE-A3AG-06 X 79698131 79698131 G A FAM46D Silent p.G31G 0.88 TCGA-EE-A3AG-06 X 84526436 84526436 C T ZNF711 Missense_Mutation p.R630C 1.00 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 X 84526691 84526691 G A ZNF711 Missense_Mutation p.D715N 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A3AG-06 X 9907344 9907344 G A SHROOM2 Missense_Mutation p.E1417K 0.89 deleterious(0.02) benign(0.063) TCGA-EE-A3AG-06 X 99551454 99551454 G A PCDH19 Missense_Mutation p.P1090S 0.85 tolerated_low_confidence(0.43) benign(0) TCGA-EE-A3AH-06 10 102059380 102059380 G A PKD2L1 Nonsense_Mutation p.Q149* 0.95 TCGA-EE-A3AH-06 10 115963267 115963267 G A TDRD1 Missense_Mutation p.E308K 0.97 tolerated(0.12) probably_damaging(0.953) TCGA-EE-A3AH-06 10 119044301 119044301 G A PDZD8 Missense_Mutation p.P648L 0.80 tolerated(0.09) benign(0) TCGA-EE-A3AH-06 10 119044302 119044302 G A PDZD8 Missense_Mutation p.P648S 0.80 tolerated(1) benign(0) TCGA-EE-A3AH-06 10 12940435 12940435 G A CCDC3 Missense_Mutation p.P265L 0.85 tolerated_low_confidence(0.05) benign(0) TCGA-EE-A3AH-06 10 15296775 15296775 G A FAM171A1 Silent p.S174S 0.91 TCGA-EE-A3AH-06 10 33495124 33495124 C T NRP1 Intron 0.71 TCGA-EE-A3AH-06 10 37447441 37447441 G A ANKRD30A Splice_Site p.X554_splice 0.84 TCGA-EE-A3AH-06 10 50531036 50531036 C T C10orf71 Missense_Mutation p.S149F 0.92 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 10 54076090 54076090 G A DKK1 Missense_Mutation p.G148R 1.00 deleterious(0.01) benign(0.372) TCGA-EE-A3AH-06 10 54076091 54076091 G A DKK1 Missense_Mutation p.G148E 1.00 tolerated(0.08) benign(0.02) TCGA-EE-A3AH-06 10 55600246 55600246 G A PCDH15 Missense_Mutation p.R1273C 1.00 deleterious(0) probably_damaging(0.932) TCGA-EE-A3AH-06 10 6154272 6154272 G A RBM17 Silent p.E268E 0.91 TCGA-EE-A3AH-06 10 70056087 70056087 C A PBLD Silent p.A73A 0.90 TCGA-EE-A3AH-06 10 70645591 70645591 C T STOX1 Missense_Mutation p.P680L 0.88 tolerated(0.44) benign(0.001) TCGA-EE-A3AH-06 10 89690811 89690812 AA - PTEN Frame_Shift_Del p.R74Tfs*3 0.41 TCGA-EE-A3AH-06 10 92508762 92508762 A T HTR7 Missense_Mutation p.S377T 0.90 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AH-06 10 98743303 98743303 C T C10orf12 Missense_Mutation p.S719L 0.90 tolerated(0.68) benign(0) TCGA-EE-A3AH-06 11 100169975 100169975 G A CNTN5 Missense_Mutation p.E823K 0.93 tolerated(0.61) probably_damaging(0.999) TCGA-EE-A3AH-06 11 102661492 102661492 C T MMP1 Missense_Mutation p.M414I 0.95 tolerated(0.45) benign(0.006) TCGA-EE-A3AH-06 11 122955333 122955333 C T CLMP Missense_Mutation p.G92E 0.94 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AH-06 11 21250883 21250883 G A NELL1 Missense_Mutation p.D478N 0.90 deleterious(0.04) possibly_damaging(0.504) TCGA-EE-A3AH-06 11 47269227 47269227 G A ACP2 Missense_Mutation p.H88Y 0.92 tolerated(0.11) benign(0.001) TCGA-EE-A3AH-06 11 5322770 5322770 G A OR51B4 Missense_Mutation p.S136F 0.95 tolerated(0.08) benign(0.013) TCGA-EE-A3AH-06 11 57068452 57068452 G A TNKS1BP1 Nonsense_Mutation p.Q1679* 0.98 TCGA-EE-A3AH-06 11 58206830 58206830 G A OR5B12 Silent p.F265F 0.95 TCGA-EE-A3AH-06 11 6191110 6191110 G A OR52B2 Silent p.A149A 0.88 TCGA-EE-A3AH-06 11 63276333 63276333 C T LGALS12 Missense_Mutation p.T104I 0.92 deleterious(0.05) benign(0.136) TCGA-EE-A3AH-06 11 65826341 65826341 C T SF3B2 Missense_Mutation p.P336L 0.36 tolerated(0.14) benign(0.038) TCGA-EE-A3AH-06 11 65826342 65826342 C T SF3B2 Silent p.P336P 0.37 TCGA-EE-A3AH-06 11 71502807 71502807 T G FAM86C1 Intron 0.92 TCGA-EE-A3AH-06 11 74570238 74570238 G A XRRA1 Missense_Mutation p.P371S 1.00 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 11 83170956 83170956 C T DLG2 Missense_Mutation p.G945R 0.93 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 11 92085877 92085877 A G FAT3 Missense_Mutation p.K200R 0.95 benign(0.075) TCGA-EE-A3AH-06 11 94040458 94040458 G A FOLR4 Nonsense_Mutation p.W152* 0.95 TCGA-EE-A3AH-06 12 10233946 10233946 C T CLEC1A Missense_Mutation p.G94E 0.33 tolerated(0.12) benign(0.051) TCGA-EE-A3AH-06 12 111746297 111746297 C T CUX2 Missense_Mutation p.L409F 0.75 deleterious(0.02) possibly_damaging(0.894) TCGA-EE-A3AH-06 12 114841720 114841720 T G TBX5 5'UTR 0.48 TCGA-EE-A3AH-06 12 11546165 11546165 G A PRB2 Missense_Mutation p.P283S 0.35 tolerated(0.05) unknown(0) TCGA-EE-A3AH-06 12 122693123 122693123 G A DIABLO Silent p.G175G 0.33 TCGA-EE-A3AH-06 12 124383306 124383306 G A DNAH10 Silent p.E3077E 0.36 TCGA-EE-A3AH-06 12 124496987 124496987 G A ZNF664 Missense_Mutation p.S99N 0.40 tolerated(0.33) benign(0.007) TCGA-EE-A3AH-06 12 125834558 125834558 G A TMEM132B Missense_Mutation p.E205K 0.41 tolerated(1) benign(0.435) TCGA-EE-A3AH-06 12 16510602 16510602 C T MGST1 Nonsense_Mutation p.R64* 0.26 TCGA-EE-A3AH-06 12 27067474 27067474 G A ASUN Missense_Mutation p.P429L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 12 27067475 27067475 G A ASUN Missense_Mutation p.P429S 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AH-06 12 27811782 27811782 G A PPFIBP1 Intron 0.43 TCGA-EE-A3AH-06 12 33560122 33560122 C T SYT10 Missense_Mutation p.E227K 0.28 tolerated(0.26) benign(0.073) TCGA-EE-A3AH-06 12 39726502 39726502 G A KIF21A Missense_Mutation p.S916F 0.48 deleterious(0) probably_damaging(0.929) TCGA-EE-A3AH-06 12 43858525 43858525 C T ADAMTS20 Missense_Mutation p.G460R 0.53 deleterious(0) probably_damaging(0.972) TCGA-EE-A3AH-06 12 48379540 48379540 G A COL2A1 Missense_Mutation p.P551S 0.56 benign(0.285) TCGA-EE-A3AH-06 12 52642524 52642524 C T KRT7 Missense_Mutation p.R464C 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3AH-06 12 53009995 53009995 G A KRT73 Missense_Mutation p.S206L 0.45 deleterious(0.02) benign(0.072) TCGA-EE-A3AH-06 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.38 tolerated_low_confidence(0.15) benign(0.32) TCGA-EE-A3AH-06 12 57167947 57167947 G A HSD17B6 Missense_Mutation p.R104K 0.36 tolerated(0.63) benign(0.1) TCGA-EE-A3AH-06 12 6886466 6886466 G A LAG3 Missense_Mutation p.G365E 0.50 tolerated(0.21) benign(0.002) TCGA-EE-A3AH-06 12 72388322 72388322 G A TPH2 Missense_Mutation p.E349K 0.43 deleterious(0) benign(0.055) TCGA-EE-A3AH-06 12 7640469 7640469 G A CD163 Silent p.F545F 0.45 TCGA-EE-A3AH-06 12 7848166 7848166 T G GDF3 Missense_Mutation p.K53N 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A3AH-06 12 78573376 78573376 G C NAV3 Missense_Mutation p.E1789Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 12 7966957 7966957 C T SLC2A14 Silent p.G506G 0.21 TCGA-EE-A3AH-06 12 8074054 8074054 C T SLC2A3 Silent p.E482E 0.20 TCGA-EE-A3AH-06 12 80749695 80749695 G A OTOGL Missense_Mutation p.D1916N 0.46 tolerated(0.07) possibly_damaging(0.869) TCGA-EE-A3AH-06 12 81657061 81657061 C T PPFIA2 Missense_Mutation p.G1222R 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.807) TCGA-EE-A3AH-06 12 96396801 96396801 A G LTA4H Missense_Mutation p.I552T 0.36 deleterious(0.01) possibly_damaging(0.729) TCGA-EE-A3AH-06 12 98995011 98995011 G A SLC25A3 Missense_Mutation p.E294K 0.47 tolerated(0.21) benign(0.06) TCGA-EE-A3AH-06 13 21955617 21955617 G A ZDHHC20 Missense_Mutation p.S338F 0.25 deleterious(0.05) possibly_damaging(0.459) TCGA-EE-A3AH-06 13 22255210 22255210 G A FGF9 Missense_Mutation p.G103S 0.43 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A3AH-06 13 24895621 24895621 G A C1QTNF9 Silent p.G239G 0.37 TCGA-EE-A3AH-06 13 40175225 40175225 G A LHFP Silent p.S43S 0.87 TCGA-EE-A3AH-06 14 19553777 19553777 G A POTEG Missense_Mutation p.G121R 0.12 tolerated(0.15) benign(0.02) TCGA-EE-A3AH-06 14 20248981 20248981 C T OR4M1 Missense_Mutation p.P167L 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AH-06 14 20296087 20296087 G A OR4N2 Silent p.V160V 0.41 TCGA-EE-A3AH-06 14 20666407 20666407 G A OR11G2 Missense_Mutation p.E305K 0.87 tolerated(0.12) benign(0.013) TCGA-EE-A3AH-06 14 23857130 23857130 G A MYH6 Silent p.I1454I 0.93 TCGA-EE-A3AH-06 14 26917477 26917477 G A NOVA1 Silent p.P404P 0.87 TCGA-EE-A3AH-06 14 37203731 37203731 G A SLC25A21 Missense_Mutation p.T84I 0.75 deleterious(0.01) possibly_damaging(0.651) TCGA-EE-A3AH-06 14 74196579 74196579 G A ELMSAN1 Missense_Mutation p.A620V 0.88 tolerated(0.2) benign(0.016) TCGA-EE-A3AH-06 14 74436806 74436806 G A ENTPD5 Silent p.F369F 0.90 TCGA-EE-A3AH-06 14 95035894 95035894 C T SERPINA4 Missense_Mutation p.L416F 0.93 tolerated(0.1) possibly_damaging(0.477) TCGA-EE-A3AH-06 14 95923534 95923537 GCGT TTG SYNE3 Frame_Shift_Del p.T256Qfs*50 0.83 TCGA-EE-A3AH-06 15 21071256 21071256 C T POTEB2 Missense_Mutation p.D119N 0.17 tolerated(0.07) possibly_damaging(0.827) TCGA-EE-A3AH-06 15 22332583 22332583 C T RP11-69H14.6 RNA 0.17 TCGA-EE-A3AH-06 15 28419673 28419673 G A HERC2 Nonsense_Mutation p.Q3309* 0.40 TCGA-EE-A3AH-06 15 28419674 28419674 G A HERC2 Silent p.G3308G 0.40 TCGA-EE-A3AH-06 15 39882059 39882059 C T THBS1 Silent p.N660N 0.38 TCGA-EE-A3AH-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.59 deleterious_low_confidence(0.01) benign(0.118) TCGA-EE-A3AH-06 15 54556559 54556559 G A UNC13C Silent p.G1214G 0.40 TCGA-EE-A3AH-06 15 57744419 57744419 G A CGNL1 Silent p.V662V 0.37 TCGA-EE-A3AH-06 15 57910309 57910309 C T MYZAP Nonsense_Mutation p.Q81* 0.45 TCGA-EE-A3AH-06 15 59359153 59359153 C T RNF111 Silent p.H519H 0.36 TCGA-EE-A3AH-06 15 69006963 69006963 C T CORO2B Silent p.F277F 0.39 TCGA-EE-A3AH-06 15 72190181 72190181 C T MYO9A Missense_Mutation p.E1555K 0.54 tolerated_low_confidence(0.37) benign(0.005) TCGA-EE-A3AH-06 15 75979994 75979994 G A CSPG4 Missense_Mutation p.P1138S 0.31 tolerated(0.82) benign(0.258) TCGA-EE-A3AH-06 15 82517553 82517553 G A EFTUD1 Silent p.S415S 0.08 TCGA-EE-A3AH-06 15 84488747 84488747 G A ADAMTSL3 Missense_Mutation p.G183E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 15 91358329 91358329 C T BLM Intron 0.41 TCGA-EE-A3AH-06 15 93043589 93043589 G A C15orf32 Missense_Mutation p.E166K 0.42 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EE-A3AH-06 16 10996615 10996615 C T CIITA Silent p.I243I 0.44 TCGA-EE-A3AH-06 16 1634239 1634239 G A IFT140 Silent p.I446I 0.60 TCGA-EE-A3AH-06 16 2138456 2138456 G A TSC2 Missense_Mutation p.E1757K 0.24 deleterious(0.02) benign(0.297) TCGA-EE-A3AH-06 16 22385600 22385600 C A CDR2 Nonsense_Mutation p.E11* 0.44 TCGA-EE-A3AH-06 16 2259370 2259370 G T BRICD5 Missense_Mutation p.P227Q 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 16 27751864 27751865 GG A KIAA0556 Frame_Shift_Del p.G749Efs*248 0.31 TCGA-EE-A3AH-06 16 28993341 28993341 C T SPNS1 Missense_Mutation p.P310L 0.47 deleterious(0) probably_damaging(0.978) TCGA-EE-A3AH-06 16 30976141 30976141 C T SETD1A Missense_Mutation p.R360C 0.38 possibly_damaging(0.876) TCGA-EE-A3AH-06 16 3168905 3168905 G A ZNF205 Splice_Site p.X162_splice 0.25 TCGA-EE-A3AH-06 16 3714414 3714414 G A TRAP1 Missense_Mutation p.S477F 0.28 deleterious(0.03) benign(0.319) TCGA-EE-A3AH-06 16 4027616 4027616 C T ADCY9 Missense_Mutation p.G899S 0.18 tolerated(0.2) benign(0) TCGA-EE-A3AH-06 16 421932 421932 G A TMEM8A 3'UTR 0.38 TCGA-EE-A3AH-06 16 49430385 49430385 C T C16orf78 Missense_Mutation p.P149L 0.45 deleterious(0.03) benign(0.098) TCGA-EE-A3AH-06 16 50744939 50744939 C T NOD2 Missense_Mutation p.R373C 0.39 tolerated(0.19) benign(0.082) TCGA-EE-A3AH-06 16 51173572 51173572 G A SALL1 Missense_Mutation p.S854L 0.50 deleterious(0.01) probably_damaging(0.941) TCGA-EE-A3AH-06 16 53340242 53340242 A G CHD9 Missense_Mutation p.N2238S 0.43 unknown(0) TCGA-EE-A3AH-06 16 67333465 67333465 G A KCTD19 Missense_Mutation p.P263S 0.49 tolerated(0.85) benign(0) TCGA-EE-A3AH-06 16 67478594 67478594 G A ATP6V0D1 Silent p.I106I 0.31 TCGA-EE-A3AH-06 16 67694229 67694229 G A ACD Silent p.L51L 0.75 TCGA-EE-A3AH-06 16 70302194 70302194 C T AARS Missense_Mutation p.D351N 0.49 tolerated(0.15) probably_damaging(1) TCGA-EE-A3AH-06 16 70917856 70917856 G A HYDIN Missense_Mutation p.L3316F 0.40 benign(0.001) TCGA-EE-A3AH-06 16 70972627 70972627 C T HYDIN Silent p.E2295E 0.43 TCGA-EE-A3AH-06 16 71482512 71482512 C T ZNF23 Silent p.G472G 0.31 TCGA-EE-A3AH-06 16 72184692 72184692 C T PMFBP1 Missense_Mutation p.E151K 0.41 tolerated(0.4) benign(0.012) TCGA-EE-A3AH-06 16 76389314 76389314 G A CNTNAP4 Missense_Mutation p.G74E 0.48 tolerated(0.13) probably_damaging(0.989) TCGA-EE-A3AH-06 16 7657328 7657328 G A RBFOX1 Missense_Mutation p.E242K 0.60 deleterious(0) benign(0.135) TCGA-EE-A3AH-06 16 81962173 81962173 A C PLCG2 Missense_Mutation p.D842A 0.35 tolerated(0.15) probably_damaging(0.958) TCGA-EE-A3AH-06 16 84100115 84100115 A G MBTPS1 Missense_Mutation p.F778L 0.45 deleterious(0.02) benign(0.414) TCGA-EE-A3AH-06 16 84256351 84256351 G A KCNG4 Silent p.I344I 0.33 TCGA-EE-A3AH-06 16 89167527 89167527 C T ACSF3 Silent p.V146V 0.59 TCGA-EE-A3AH-06 17 10224953 10224953 G A MYH13 Silent p.L1003L 0.53 TCGA-EE-A3AH-06 17 10312618 10312618 G A MYH8 Silent p.S625S 0.40 TCGA-EE-A3AH-06 17 10400471 10400471 C T MYH1 Missense_Mutation p.G1524E 0.34 deleterious(0.01) possibly_damaging(0.673) TCGA-EE-A3AH-06 17 10431131 10431131 C T MYH2 Missense_Mutation p.E1269K 0.44 tolerated(0.29) benign(0.102) TCGA-EE-A3AH-06 17 12819252 12819252 A G ARHGAP44 Missense_Mutation p.K104R 0.45 tolerated(0.27) benign(0.003) TCGA-EE-A3AH-06 17 14248469 14248469 G A HS3ST3B1 Missense_Mutation p.V227M 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AH-06 17 15960834 15960834 C T NCOR1 Missense_Mutation p.R2129K 0.44 probably_damaging(0.977) TCGA-EE-A3AH-06 17 21081617 21081617 G A DHRS7B Missense_Mutation p.E91K 0.43 tolerated(0.12) possibly_damaging(0.515) TCGA-EE-A3AH-06 17 27309029 27309029 C T SEZ6 Silent p.G28G 0.38 TCGA-EE-A3AH-06 17 27309030 27309030 C T SEZ6 Missense_Mutation p.G28E 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.493) TCGA-EE-A3AH-06 17 33592123 33592123 C T SLFN5 Missense_Mutation p.T631I 0.35 deleterious(0) probably_damaging(0.93) TCGA-EE-A3AH-06 17 39550277 39550277 G A KRT31 Silent p.F414F 0.51 TCGA-EE-A3AH-06 17 41141416 41141416 C T RUNDC1 Missense_Mutation p.S239F 0.39 tolerated(0.38) benign(0.27) TCGA-EE-A3AH-06 17 42636370 42636370 C T FZD2 Silent p.L438L 0.44 TCGA-EE-A3AH-06 17 48735850 48735850 T C ABCC3 Missense_Mutation p.F223L 0.44 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A3AH-06 17 59152286 59152286 C T BCAS3 Missense_Mutation p.P694S 0.39 tolerated(0.2) possibly_damaging(0.472) TCGA-EE-A3AH-06 17 62024439 62024439 G A SCN4A Missense_Mutation p.P1136L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 17 74392229 74392229 G A UBE2O Missense_Mutation p.S930F 0.44 deleterious(0) benign(0.444) TCGA-EE-A3AH-06 17 79077423 79077423 C T BAIAP2 Missense_Mutation p.P255L 0.23 deleterious(0.01) benign(0.211) TCGA-EE-A3AH-06 17 79077424 79077424 C T BAIAP2 Silent p.P255P 0.22 TCGA-EE-A3AH-06 17 80159682 80159682 G A CCDC57 Nonsense_Mutation p.Q47* 0.44 TCGA-EE-A3AH-06 17 80540626 80540626 C T FOXK2 Missense_Mutation p.R307C 0.36 tolerated(0.05) possibly_damaging(0.452) TCGA-EE-A3AH-06 17 8792491 8792491 C T PIK3R5 Missense_Mutation p.R287K 0.70 tolerated(0.55) benign(0.07) TCGA-EE-A3AH-06 17 9680538 9680538 C T DHRS7C Silent p.G182G 0.53 TCGA-EE-A3AH-06 18 44030303 44030303 C T RNF165 Silent p.F220F 0.94 TCGA-EE-A3AH-06 18 50994285 50994285 G A DCC Missense_Mutation p.G1214E 0.80 deleterious(0.04) benign(0.005) TCGA-EE-A3AH-06 18 5395630 5395630 G C EPB41L3 Missense_Mutation p.T1017S 0.87 tolerated(0.11) possibly_damaging(0.781) TCGA-EE-A3AH-06 18 61264526 61264526 C T SERPINB13 Missense_Mutation p.P369S 0.92 deleterious(0.04) probably_damaging(1) TCGA-EE-A3AH-06 18 64221643 64221645 TGT - CDH19 In_Frame_Del p.T203del 0.86 TCGA-EE-A3AH-06 19 12817287 12817287 G A TNPO2 Intron 0.43 TCGA-EE-A3AH-06 19 15730447 15730447 G A CYP4F8 RNA 0.58 TCGA-EE-A3AH-06 19 17692028 17692028 C T COLGALT1 Silent p.A548A 0.50 TCGA-EE-A3AH-06 19 20044200 20044200 C T ZNF93 Nonsense_Mutation p.Q146* 0.66 TCGA-EE-A3AH-06 19 35801484 35801484 C T MAG Silent p.G518G 0.51 TCGA-EE-A3AH-06 19 36217228 36217228 C T KMT2B Missense_Mutation p.P1326L 0.40 probably_damaging(0.981) TCGA-EE-A3AH-06 19 38782679 38782679 G A SPINT2 3'UTR 0.56 TCGA-EE-A3AH-06 19 39215191 39215191 C T ACTN4 Nonsense_Mutation p.Q666* 0.35 TCGA-EE-A3AH-06 19 40199988 40199988 C T LGALS14 3'Flank 0.31 TCGA-EE-A3AH-06 19 40364063 40364063 C T FCGBP Missense_Mutation p.G4860E 0.51 probably_damaging(0.999) TCGA-EE-A3AH-06 19 40398010 40398010 G A FCGBP Silent p.A2319A 0.20 TCGA-EE-A3AH-06 19 40540276 40540276 G A ZNF780B Silent p.F830F 0.38 TCGA-EE-A3AH-06 19 41509972 41509972 G A CYP2B6 Missense_Mutation p.G80R 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 19 41627421 41627421 C T CYP2F1 Silent p.S181S 0.47 TCGA-EE-A3AH-06 19 41630675 41630675 C T CYP2F1 Missense_Mutation p.A339V 0.56 deleterious(0.02) benign(0.009) TCGA-EE-A3AH-06 19 42213851 42213851 C T CEA Missense_Mutation p.S106F 0.33 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AH-06 19 42260760 42260760 C T CEACAM6 Missense_Mutation p.S106F 0.08 deleterious(0) probably_damaging(0.991) TCGA-EE-A3AH-06 19 43031300 43031300 G A CEACAM1 Missense_Mutation p.S106F 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AH-06 19 43519492 43519492 G A PSG11 Missense_Mutation p.S247L 0.42 tolerated(0.09) benign(0.341) TCGA-EE-A3AH-06 19 44500877 44500877 T C ZNF155 Missense_Mutation p.C301R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 19 44833297 44833297 G A ZNF112 Missense_Mutation p.S344F 0.41 deleterious(0) probably_damaging(0.94) TCGA-EE-A3AH-06 19 47197355 47197355 G A PRKD2 Silent p.S451S 0.39 TCGA-EE-A3AH-06 19 47197356 47197356 G A PRKD2 Missense_Mutation p.S451F 0.37 tolerated(0.08) benign(0.33) TCGA-EE-A3AH-06 19 47260078 47260078 C T FKRP Silent p.F457F 0.38 TCGA-EE-A3AH-06 19 50303023 50303023 C T AP2A1 Silent p.I424I 0.50 TCGA-EE-A3AH-06 19 50435745 50435745 C T ATF5 Missense_Mutation p.P82L 0.52 tolerated(0.05) benign(0.36) TCGA-EE-A3AH-06 19 51527553 51527553 G A KLK11 Missense_Mutation p.H103Y 0.32 tolerated(0.17) benign(0.015) TCGA-EE-A3AH-06 19 52619037 52619037 G A ZNF616 Silent p.T460T 0.30 TCGA-EE-A3AH-06 19 52619486 52619486 G A ZNF616 Missense_Mutation p.H311Y 0.32 tolerated(1) benign(0.03) TCGA-EE-A3AH-06 19 53116288 53116288 C T ZNF83 Silent p.K510K 0.46 TCGA-EE-A3AH-06 19 53269306 53269306 G A ZNF600 Missense_Mutation p.S568F 0.42 tolerated(0.22) probably_damaging(0.948) TCGA-EE-A3AH-06 19 53572698 53572698 A T ZNF160 Missense_Mutation p.H363Q 0.51 deleterious(0) probably_damaging(0.938) TCGA-EE-A3AH-06 19 54225433 54225433 C T MIR520G RNA 0.32 TCGA-EE-A3AH-06 19 54779825 54779825 C T LILRB2 Missense_Mutation p.G544R 0.49 tolerated(0.2) benign(0.004) TCGA-EE-A3AH-06 19 54848870 54848870 G A LILRA4 Silent p.I251I 0.38 TCGA-EE-A3AH-06 19 56249743 56249743 C T NLRP9 5'UTR 0.42 TCGA-EE-A3AH-06 19 6374888 6374888 C T ALKBH7 Silent p.R190R 0.52 TCGA-EE-A3AH-06 19 8665929 8665929 C T ADAMTS10 Silent p.L231L 0.52 TCGA-EE-A3AH-06 19 9026203 9026203 G A MUC16 Silent p.V12261V 0.43 TCGA-EE-A3AH-06 1 114515766 114515766 C T HIPK1 Missense_Mutation p.P1089S 0.40 deleterious(0.04) benign(0.23) TCGA-EE-A3AH-06 1 119958112 119958112 G A HSD3B2 Missense_Mutation p.E24K 0.45 tolerated(0.09) benign(0.097) TCGA-EE-A3AH-06 1 12566992 12566992 G A VPS13D Missense_Mutation p.D4294N 0.45 probably_damaging(0.981) TCGA-EE-A3AH-06 1 12835842 12835842 C T PRAMEF12 Silent p.I148I 0.46 TCGA-EE-A3AH-06 1 144886268 144886268 G A PDE4DIP Missense_Mutation p.S989F 0.21 tolerated(0.14) benign(0.091) TCGA-EE-A3AH-06 1 145281564 145281564 C T NOTCH2NL Missense_Mutation p.S165F 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 1 152329048 152329048 G A FLG2 Missense_Mutation p.S405L 0.41 unknown(0) TCGA-EE-A3AH-06 1 153580502 153580502 G A S100A16 Silent p.L42L 0.38 TCGA-EE-A3AH-06 1 154067551 154067551 T C NUP210L Missense_Mutation p.I683V 0.46 tolerated(1) benign(0.002) TCGA-EE-A3AH-06 1 156013850 156013850 G A UBQLN4 Silent p.T355T 0.42 TCGA-EE-A3AH-06 1 156214933 156214933 C T PAQR6 Silent p.R97R 0.47 TCGA-EE-A3AH-06 1 156521554 156521554 G A IQGAP3 Silent p.L559L 0.53 TCGA-EE-A3AH-06 1 157666858 157666858 G A FCRL3 Intron 0.75 TCGA-EE-A3AH-06 1 158609797 158609797 C T SPTA1 Missense_Mutation p.E1580K 0.30 tolerated(0.79) benign(0.006) TCGA-EE-A3AH-06 1 158817534 158817534 A G MNDA Missense_Mutation p.K335R 0.33 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AH-06 1 159163801 159163801 G A CADM3 Missense_Mutation p.R255K 0.36 tolerated(0.79) benign(0.009) TCGA-EE-A3AH-06 1 16255330 16255330 G A SPEN Silent p.E865E 0.42 TCGA-EE-A3AH-06 1 163307861 163307861 T A NUF2 Missense_Mutation p.L163I 0.49 tolerated(0.5) benign(0) TCGA-EE-A3AH-06 1 16935094 16935094 G A NBPF1 5'UTR 0.09 TCGA-EE-A3AH-06 1 173772132 173772133 AC - CENPL Frame_Shift_Del p.V357Sfs*6 0.28 TCGA-EE-A3AH-06 1 17720578 17720578 G A PADI6 Intron 0.37 TCGA-EE-A3AH-06 1 177927976 177927976 C T SEC16B Missense_Mutation p.G378E 0.41 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AH-06 1 177927977 177927977 C A SEC16B Missense_Mutation p.G378W 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 1 190067086 190067086 C T BRINP3 3'UTR 0.30 TCGA-EE-A3AH-06 1 196952084 196952084 C T CFHR5 Missense_Mutation p.S43F 0.23 tolerated(0.72) benign(0.004) TCGA-EE-A3AH-06 1 198665951 198665951 G A PTPRC Missense_Mutation p.E71K 0.27 tolerated_low_confidence(0.12) possibly_damaging(0.656) TCGA-EE-A3AH-06 1 198685878 198685878 G A PTPRC Silent p.T453T 0.22 TCGA-EE-A3AH-06 1 201079333 201079333 G A CACNA1S Missense_Mutation p.P73S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 1 203155789 203155789 C T CHI3L1 5'UTR 0.39 TCGA-EE-A3AH-06 1 203155790 203155790 C T CHI3L1 5'UTR 0.38 TCGA-EE-A3AH-06 1 204125360 204125360 G A REN Silent p.T302T 0.36 TCGA-EE-A3AH-06 1 204587039 204587039 C T LRRN2 Silent p.R694R 0.27 TCGA-EE-A3AH-06 1 207297568 207297568 G A C4BPA Missense_Mutation p.G188D 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A3AH-06 1 207697238 207697238 C T CR1 Missense_Mutation p.S257F 0.27 tolerated(0.24) possibly_damaging(0.796) TCGA-EE-A3AH-06 1 209933708 209933708 G A TRAF3IP3 Silent p.R108R 0.44 TCGA-EE-A3AH-06 1 213290686 213290686 T C RPS6KC1 Silent p.L136L 0.35 TCGA-EE-A3AH-06 1 216496995 216496995 C T USH2A Silent p.L457L 0.28 TCGA-EE-A3AH-06 1 22328198 22328198 C T CELA3A Missense_Mutation p.L11F 0.46 tolerated(0.44) unknown(0) TCGA-EE-A3AH-06 1 240371827 240371827 C T FMN2 Missense_Mutation p.P1239S 0.17 benign(0.005) TCGA-EE-A3AH-06 1 247902063 247902063 G A OR14K1 Silent p.L49L 0.24 TCGA-EE-A3AH-06 1 248366576 248366576 G A OR2M3 Missense_Mutation p.M69I 0.29 tolerated(0.08) benign(0.111) TCGA-EE-A3AH-06 1 248367254 248367254 G A OR2M3 Silent p.K295K 0.27 TCGA-EE-A3AH-06 1 248756492 248756492 G A OR2T10 Missense_Mutation p.S193L 0.37 tolerated(0.08) benign(0.232) TCGA-EE-A3AH-06 1 32124100 32124100 G A COL16A1 Missense_Mutation p.P1337S 0.28 unknown(0) TCGA-EE-A3AH-06 1 3350340 3350340 G A PRDM16 Missense_Mutation p.E1266K 0.49 deleterious(0) probably_damaging(0.968) TCGA-EE-A3AH-06 1 34102028 34102028 G A CSMD2 Missense_Mutation p.S1594L 0.47 deleterious(0.01) possibly_damaging(0.531) TCGA-EE-A3AH-06 1 45923403 45923403 G A TESK2 Missense_Mutation p.L19F 0.43 tolerated_low_confidence(0.07) benign(0.258) TCGA-EE-A3AH-06 1 46977754 46977754 G A DMBX1 Missense_Mutation p.G241E 0.33 tolerated_low_confidence(0.07) benign(0.144) TCGA-EE-A3AH-06 1 54344369 54344369 G A YIPF1 Silent p.S74S 0.27 TCGA-EE-A3AH-06 1 59248633 59248633 C A JUN Missense_Mutation p.S37I 0.47 deleterious(0.03) benign(0.328) TCGA-EE-A3AH-06 1 62235087 62235087 G A INADL Missense_Mutation p.A173T 0.41 deleterious(0) probably_damaging(0.92) TCGA-EE-A3AH-06 1 65305330 65305330 T A JAK1 Missense_Mutation p.Y933F 0.37 tolerated(0.05) benign(0.185) TCGA-EE-A3AH-06 1 66379000 66379000 G A PDE4B Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-EE-A3AH-06 1 67633778 67633778 G A IL23R 5'UTR 0.48 TCGA-EE-A3AH-06 1 72241933 72241933 C T NEGR1 Missense_Mutation p.G153R 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 1 75037439 75037439 C T C1orf173 Missense_Mutation p.D1319N 0.53 tolerated(0.42) benign(0.032) TCGA-EE-A3AH-06 1 7913039 7913039 A C UTS2 Intron 0.51 TCGA-EE-A3AH-06 1 90398923 90398923 C T LRRC8D Missense_Mutation p.S99F 0.71 tolerated(0.08) benign(0.172) TCGA-EE-A3AH-06 20 13055077 13055077 C T SPTLC3 Missense_Mutation p.S180F 0.46 deleterious(0.05) benign(0.097) TCGA-EE-A3AH-06 20 2593840 2593840 G A TMC2 Missense_Mutation p.E582K 0.33 deleterious(0) probably_damaging(0.995) TCGA-EE-A3AH-06 20 2816131 2816131 G A PCED1A Missense_Mutation p.H448Y 0.29 deleterious_low_confidence(0) benign(0.192) TCGA-EE-A3AH-06 20 2816132 2816132 G A PCED1A Silent p.A447A 0.29 TCGA-EE-A3AH-06 20 36953197 36953197 C T BPI Nonsense_Mutation p.R323* 0.39 TCGA-EE-A3AH-06 20 3779075 3779075 C T CDC25B Silent p.S115S 0.42 TCGA-EE-A3AH-06 20 40944419 40944419 G A PTPRT Missense_Mutation p.L695F 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3AH-06 20 43851480 43851480 G A SEMG2 Missense_Mutation p.E403K 0.47 tolerated(0.16) benign(0.446) TCGA-EE-A3AH-06 20 58587777 58587777 C T CDH26 Missense_Mutation p.P831S 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.744) TCGA-EE-A3AH-06 20 60485628 60485628 C T CDH4 Missense_Mutation p.P447S 0.48 deleterious(0) possibly_damaging(0.605) TCGA-EE-A3AH-06 20 62830252 62830252 G A MYT1 Missense_Mutation p.R13Q 0.33 benign(0.003) TCGA-EE-A3AH-06 21 40190402 40190402 G A ETS2 Missense_Mutation p.G215S 0.91 tolerated(1) benign(0.001) TCGA-EE-A3AH-06 21 41711242 41711242 C T DSCAM Silent p.T437T 0.96 TCGA-EE-A3AH-06 21 42080489 42080489 G A DSCAM Silent p.F84F 0.84 TCGA-EE-A3AH-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.21 deleterious(0.01) possibly_damaging(0.461) TCGA-EE-A3AH-06 22 23915600 23915600 G A IGLL1 Silent p.P165P 0.55 TCGA-EE-A3AH-06 22 29885119 29885119 G A NEFH Missense_Mutation p.G497E 0.36 tolerated(0.97) unknown(0) TCGA-EE-A3AH-06 22 31331235 31331235 C T MORC2 Silent p.E542E 0.45 TCGA-EE-A3AH-06 22 37602744 37602744 C T SSTR3 Missense_Mutation p.G367R 0.52 tolerated(0.4) benign(0.001) TCGA-EE-A3AH-06 22 37602745 37602745 C T SSTR3 Silent p.K366K 0.48 TCGA-EE-A3AH-06 22 38525475 38525475 G A PLA2G6 Missense_Mutation p.S391F 0.41 deleterious(0.01) possibly_damaging(0.594) TCGA-EE-A3AH-06 22 40711294 40711294 C A TNRC6B Missense_Mutation p.F1562L 0.47 tolerated(1) possibly_damaging(0.694) TCGA-EE-A3AH-06 2 107007411 107007411 G A PLGLA RNA 0.45 TCGA-EE-A3AH-06 2 113875548 113875566 AGAGTCTGGAAGACCTCAG - IL1RN 5'UTR 0.27 TCGA-EE-A3AH-06 2 125405373 125405373 G A CNTNAP5 Missense_Mutation p.E638K 0.58 tolerated(0.25) benign(0.22) TCGA-EE-A3AH-06 2 140990744 140990744 G A LRP1B 3'UTR 0.40 TCGA-EE-A3AH-06 2 141081612 141081612 C T LRP1B Missense_Mutation p.D4122N 0.43 possibly_damaging(0.555) TCGA-EE-A3AH-06 2 155711283 155711283 C T KCNJ3 Missense_Mutation p.L322F 0.34 deleterious(0.03) probably_damaging(0.928) TCGA-EE-A3AH-06 2 160268984 160268984 T C BAZ2B Missense_Mutation p.R847G 0.42 probably_damaging(0.982) TCGA-EE-A3AH-06 2 165997165 165997165 G A SCN3A Missense_Mutation p.P672L 0.39 deleterious(0.03) benign(0.009) TCGA-EE-A3AH-06 2 169792881 169792881 G A ABCB11 Silent p.I891I 0.38 TCGA-EE-A3AH-06 2 169938290 169938290 A C DHRS9 Missense_Mutation p.T67P 0.42 deleterious(0) benign(0.4) TCGA-EE-A3AH-06 2 179469580 179469580 G A TTN Missense_Mutation p.A18079V 0.35 TCGA-EE-A3AH-06 2 179495596 179495596 C T TTN Missense_Mutation p.E14697K 0.50 TCGA-EE-A3AH-06 2 179605752 179605752 C T TTN Missense_Mutation p.E4070K 0.42 TCGA-EE-A3AH-06 2 179634970 179634970 G A TTN Missense_Mutation p.H2820Y 0.56 TCGA-EE-A3AH-06 2 179650817 179650817 C T TTN Missense_Mutation p.D710N 0.51 TCGA-EE-A3AH-06 2 182409513 182409513 C T CERKL Missense_Mutation p.G453R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 2 183817137 183817152 AGTTCAGCAACTTGTG - NCKAP1 Frame_Shift_Del p.S867Lfs*12 0.21 TCGA-EE-A3AH-06 2 185800571 185800571 G A ZNF804A Missense_Mutation p.E150K 0.49 deleterious(0.01) benign(0.057) TCGA-EE-A3AH-06 2 189875410 189875410 C T COL3A1 Missense_Mutation p.L1350F 0.48 unknown(0) TCGA-EE-A3AH-06 2 190328664 190328664 C T WDR75 Nonsense_Mutation p.Q364* 0.44 TCGA-EE-A3AH-06 2 191931173 191931173 G A STAT4 Missense_Mutation p.L205F 0.54 deleterious(0) probably_damaging(0.997) TCGA-EE-A3AH-06 2 196651833 196651833 C T DNAH7 Silent p.R3593R 0.41 TCGA-EE-A3AH-06 2 197298137 197298137 G A HECW2 Missense_Mutation p.S4L 0.37 tolerated_low_confidence(0.06) benign(0.162) TCGA-EE-A3AH-06 2 204735604 204735604 C T CTLA4 Silent p.Y135Y 0.23 TCGA-EE-A3AH-06 2 21231126 21231126 C T APOB Missense_Mutation p.G2872R 0.50 benign(0.235) TCGA-EE-A3AH-06 2 228882929 228882929 G A SPHKAP Missense_Mutation p.P881S 0.41 tolerated(0.37) benign(0.01) TCGA-EE-A3AH-06 2 231406079 231406079 C T SP100 Missense_Mutation p.P799S 0.45 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A3AH-06 2 234750117 234750117 G A HJURP Nonsense_Mutation p.R437* 0.40 TCGA-EE-A3AH-06 2 239057733 239057733 C T KLHL30 Silent p.L475L 0.49 TCGA-EE-A3AH-06 2 239306319 239306319 A G TRAF3IP1 Missense_Mutation p.R637G 0.51 deleterious(0.02) benign(0.008) TCGA-EE-A3AH-06 2 239306320 239306320 G A TRAF3IP1 Missense_Mutation p.R637K 0.50 deleterious(0.02) benign(0.004) TCGA-EE-A3AH-06 2 240984753 240984753 G A OR6B3 Missense_Mutation p.T246I 0.44 tolerated(0.14) benign(0.034) TCGA-EE-A3AH-06 2 242814966 242814966 C T CXXC11 Missense_Mutation p.S420F 0.41 tolerated(0.07) benign(0) TCGA-EE-A3AH-06 2 30964797 30964797 T A CAPN13 Missense_Mutation p.I505F 0.44 deleterious(0.01) benign(0.006) TCGA-EE-A3AH-06 2 47357016 47357016 C T C2orf61 Intron 0.44 TCGA-EE-A3AH-06 2 50280423 50280423 C T NRXN1 Missense_Mutation p.E1412K 0.33 tolerated_low_confidence(0.11) benign(0.006) TCGA-EE-A3AH-06 2 55921011 55921011 G A PNPT1 5'UTR 0.58 TCGA-EE-A3AH-06 2 95947945 95947945 G A PROM2 Missense_Mutation p.D567N 0.42 tolerated(0.31) benign(0.038) TCGA-EE-A3AH-06 3 108279545 108279545 G A KIAA1524 Missense_Mutation p.P593L 0.42 tolerated(0.25) benign(0.009) TCGA-EE-A3AH-06 3 111432890 111432890 C T PLCXD2 Missense_Mutation p.H261Y 0.38 tolerated(0.31) probably_damaging(0.997) TCGA-EE-A3AH-06 3 111719781 111719781 G A TAGLN3 Missense_Mutation p.D115N 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3AH-06 3 112356885 112356885 C T CCDC80 Missense_Mutation p.R623Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A3AH-06 3 112647745 112647745 C T CD200R1 Nonsense_Mutation p.W229* 0.49 TCGA-EE-A3AH-06 3 113374842 113374842 G A KIAA2018 Missense_Mutation p.P1896L 0.43 probably_damaging(0.999) TCGA-EE-A3AH-06 3 120876460 120876460 C T STXBP5L Missense_Mutation p.T288I 0.40 tolerated(0.93) benign(0.006) TCGA-EE-A3AH-06 3 120941960 120941960 C T STXBP5L Missense_Mutation p.P356L 0.46 deleterious(0) probably_damaging(0.938) TCGA-EE-A3AH-06 3 121001148 121001148 C T STXBP5L Missense_Mutation p.P716S 0.53 tolerated(0.68) benign(0.038) TCGA-EE-A3AH-06 3 121712360 121712360 G A ILDR1 Silent p.P412P 0.41 TCGA-EE-A3AH-06 3 121712361 121712361 G A ILDR1 Missense_Mutation p.P412L 0.40 deleterious(0) possibly_damaging(0.526) TCGA-EE-A3AH-06 3 121712468 121712468 G A ILDR1 Silent p.F376F 0.70 TCGA-EE-A3AH-06 3 130285721 130285721 G A COL6A6 Silent p.L486L 0.51 TCGA-EE-A3AH-06 3 133666219 133666219 G A SLCO2A1 Silent p.F392F 0.43 TCGA-EE-A3AH-06 3 136240063 136240063 G A STAG1 Missense_Mutation p.T223I 0.52 deleterious(0) probably_damaging(0.996) TCGA-EE-A3AH-06 3 142090133 142090133 G A XRN1 Nonsense_Mutation p.Q1006* 0.38 TCGA-EE-A3AH-06 3 142215206 142215206 G A ATR Silent p.S1965S 0.33 TCGA-EE-A3AH-06 3 151165605 151165605 G A IGSF10 Missense_Mutation p.R722W 0.49 deleterious(0.03) benign(0.012) TCGA-EE-A3AH-06 3 15498041 15498041 G A COLQ Nonsense_Mutation p.Q334* 0.28 TCGA-EE-A3AH-06 3 158390297 158390297 G A LXN 5'UTR 0.48 TCGA-EE-A3AH-06 3 167246977 167246977 C T WDR49 Missense_Mutation p.D405N 0.38 tolerated(1) benign(0.003) TCGA-EE-A3AH-06 3 184052517 184052517 C T EIF4G1 Silent p.L1548L 0.55 TCGA-EE-A3AH-06 3 189689789 189689789 C T LEPREL1 Silent p.Q569Q 0.36 TCGA-EE-A3AH-06 3 191861816 191861816 C T FGF12 Silent p.V238V 0.42 TCGA-EE-A3AH-06 3 193185144 193185144 C T ATP13A4 Missense_Mutation p.A359T 0.56 tolerated(0.4) benign(0.021) TCGA-EE-A3AH-06 3 194349132 194349132 C T TMEM44 Missense_Mutation p.A82T 0.33 deleterious(0) probably_damaging(0.916) TCGA-EE-A3AH-06 3 2967440 2967440 G A CNTN4 Silent p.R445R 0.48 TCGA-EE-A3AH-06 3 38751082 38751082 C T SCN10A Missense_Mutation p.D1390N 0.46 tolerated(0.45) benign(0.008) TCGA-EE-A3AH-06 3 38798227 38798227 C T SCN10A Missense_Mutation p.E410K 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3AH-06 3 45812857 45812857 C T SLC6A20 Missense_Mutation p.A263T 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 3 46307124 46307124 G A CCR3 Missense_Mutation p.G180S 0.46 tolerated(0.27) benign(0.059) TCGA-EE-A3AH-06 3 48802507 48802507 G A PRKAR2A Missense_Mutation p.S268L 0.55 tolerated(0.15) possibly_damaging(0.558) TCGA-EE-A3AH-06 3 51267025 51267025 G A DOCK3 Silent p.G634G 0.43 TCGA-EE-A3AH-06 3 51697451 51697451 C T RAD54L2 3'UTR 0.41 TCGA-EE-A3AH-06 3 52836375 52836375 C T ITIH3 Missense_Mutation p.P470L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 3 58849474 58849474 T G C3orf67 Missense_Mutation p.E343A 0.41 tolerated(0.32) possibly_damaging(0.69) TCGA-EE-A3AH-06 3 58849475 58849475 C T C3orf67 Missense_Mutation p.E343K 0.41 tolerated(0.4) benign(0.106) TCGA-EE-A3AH-06 3 74334516 74334516 A G CNTN3 Missense_Mutation p.Y882H 0.36 deleterious(0.03) possibly_damaging(0.903) TCGA-EE-A3AH-06 3 74334517 74334517 A C CNTN3 Silent p.A881A 0.36 TCGA-EE-A3AH-06 3 87313611 87313611 C T POU1F1 Missense_Mutation p.G115E 0.53 deleterious(0) possibly_damaging(0.598) TCGA-EE-A3AH-06 3 9032286 9032286 G A SRGAP3 Silent p.S932S 0.31 TCGA-EE-A3AH-06 3 97852162 97852162 G A OR5H1 Silent p.Q207Q 0.37 TCGA-EE-A3AH-06 4 100134848 100134848 C T ADH6 Silent p.L59L 0.42 TCGA-EE-A3AH-06 4 10445217 10445217 C T ZNF518B Silent p.K912K 0.44 TCGA-EE-A3AH-06 4 106156322 106156322 C T TET2 Missense_Mutation p.P408L 0.54 tolerated_low_confidence(0.22) benign(0.33) TCGA-EE-A3AH-06 4 114435031 114435033 CTC - CAMK2D In_Frame_Del p.E286del 0.42 TCGA-EE-A3AH-06 4 123350868 123350868 C T ADAD1 Missense_Mutation p.P569S 0.35 tolerated(0.21) benign(0.086) TCGA-EE-A3AH-06 4 148944420 148944420 C T ARHGAP10 Missense_Mutation p.R575W 0.44 deleterious(0.04) probably_damaging(0.965) TCGA-EE-A3AH-06 4 157771501 157771501 C T PDGFC Silent p.R62R 0.35 TCGA-EE-A3AH-06 4 159136446 159136446 G A TMEM144 Silent p.G71G 0.58 TCGA-EE-A3AH-06 4 159136447 159136447 G A TMEM144 Missense_Mutation p.G72S 0.57 deleterious(0) probably_damaging(0.981) TCGA-EE-A3AH-06 4 2661700 2661700 C T FAM193A Missense_Mutation p.S264L 0.33 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A3AH-06 4 36069787 36069787 C T ARAP2 Silent p.K1619K 0.42 TCGA-EE-A3AH-06 4 48116367 48116367 C T TXK Silent p.K23K 0.49 TCGA-EE-A3AH-06 4 5837637 5837641 CTTAC - CRMP1 Splice_Site p.X541_splice 0.39 TCGA-EE-A3AH-06 4 62849229 62849229 G A LPHN3 Silent p.R980R 0.40 TCGA-EE-A3AH-06 4 6302505 6302507 TCT - WFS1 In_Frame_Del p.F331del 0.23 TCGA-EE-A3AH-06 4 7032106 7032106 C T TBC1D14 Missense_Mutation p.S690F 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.671) TCGA-EE-A3AH-06 4 75938092 75938092 G A PARM1 Silent p.E167E 0.45 TCGA-EE-A3AH-06 4 7705995 7705995 G A SORCS2 Missense_Mutation p.E618K 0.42 deleterious(0) probably_damaging(0.986) TCGA-EE-A3AH-06 4 82063963 82063963 G A PRKG2 Silent p.F464F 0.84 TCGA-EE-A3AH-06 5 132535121 132535121 G A FSTL4 Missense_Mutation p.S732L 0.97 tolerated(1) benign(0.001) TCGA-EE-A3AH-06 5 134002605 134002605 C T SEC24A Missense_Mutation p.P220S 0.88 tolerated(0.14) benign(0.046) TCGA-EE-A3AH-06 5 138773084 138773084 C T DNAJC18 Silent p.E68E 0.95 TCGA-EE-A3AH-06 5 13901400 13901400 C T DNAH5 Silent p.L671L 0.61 TCGA-EE-A3AH-06 5 140557574 140557574 C T PCDHB8 5'UTR 0.89 TCGA-EE-A3AH-06 5 140572788 140572788 C T PCDHB10 Silent p.S221S 0.94 TCGA-EE-A3AH-06 5 140744593 140744593 C T PCDHGA5 Silent p.V232V 0.79 TCGA-EE-A3AH-06 5 170222424 170222424 C T GABRP Silent p.A151A 0.96 TCGA-EE-A3AH-06 5 180043405 180043405 C T FLT4 Missense_Mutation p.D1061N 0.96 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 5 23509604 23509604 C T PRDM9 Missense_Mutation p.S32F 0.26 deleterious_low_confidence(0) possibly_damaging(0.538) TCGA-EE-A3AH-06 5 26885885 26885885 C T CDH9 Missense_Mutation p.D574N 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3AH-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.22 deleterious(0) possibly_damaging(0.482) TCGA-EE-A3AH-06 5 32789930 32789930 C T NPR3 3'UTR 0.28 TCGA-EE-A3AH-06 5 35875648 35875648 C T IL7R Missense_Mutation p.H279Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 5 36049425 36049425 C T UGT3A2 Missense_Mutation p.E137K 0.66 tolerated(0.11) benign(0.361) TCGA-EE-A3AH-06 5 38886151 38886151 G A OSMR Missense_Mutation p.E284K 0.30 tolerated(1) benign(0.001) TCGA-EE-A3AH-06 5 42718154 42718154 G A GHR Silent p.R292R 0.59 TCGA-EE-A3AH-06 5 5463006 5463006 T C KIAA0947 Missense_Mutation p.Y1187H 0.12 deleterious(0) probably_damaging(0.971) TCGA-EE-A3AH-06 5 72863154 72863154 G T UTP15 5'UTR 0.92 TCGA-EE-A3AH-06 5 79031658 79031658 G A CMYA5 Nonsense_Mutation p.W2357* 0.74 TCGA-EE-A3AH-06 5 89970009 89970009 G A GPR98 Missense_Mutation p.E1690K 0.71 possibly_damaging(0.899) TCGA-EE-A3AH-06 6 117622160 117622160 C T ROS1 Missense_Mutation p.G2237E 0.59 deleterious(0.05) benign(0.194) TCGA-EE-A3AH-06 6 123539823 123539823 G A TRDN Missense_Mutation p.P705S 0.52 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3AH-06 6 125232280 125232280 C T RP11-510H23.1 RNA 0.53 TCGA-EE-A3AH-06 6 127796803 127796803 G A SOGA3 Missense_Mutation p.R790C 0.50 deleterious(0.01) benign(0.031) TCGA-EE-A3AH-06 6 128135017 128135017 C T THEMIS Missense_Mutation p.D257N 0.41 tolerated(0.11) possibly_damaging(0.69) TCGA-EE-A3AH-06 6 149795658 149795658 C T ZC3H12D Missense_Mutation p.E8K 0.44 tolerated(0.06) possibly_damaging(0.804) TCGA-EE-A3AH-06 6 153043010 153043010 G A MYCT1 Silent p.R110R 0.41 TCGA-EE-A3AH-06 6 15511561 15511561 G A JARID2 Missense_Mutation p.E961K 0.36 tolerated(0.33) benign(0.446) TCGA-EE-A3AH-06 6 161085244 161085244 C T LPA Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) benign(0.131) TCGA-EE-A3AH-06 6 167755012 167755012 C T TTLL2 Silent p.L542L 0.39 TCGA-EE-A3AH-06 6 168445645 168445645 C T KIF25 Missense_Mutation p.S375F 0.48 deleterious(0.01) possibly_damaging(0.504) TCGA-EE-A3AH-06 6 25862543 25862543 G A SLC17A3 Missense_Mutation p.S74F 0.44 tolerated(0.32) benign(0.111) TCGA-EE-A3AH-06 6 25868646 25868646 C T SLC17A3 Intron 0.35 TCGA-EE-A3AH-06 6 27419892 27419892 G A ZNF184 Silent p.A482A 0.40 TCGA-EE-A3AH-06 6 28294089 28294089 C T ZSCAN31 Missense_Mutation p.A359T 0.49 tolerated(0.54) benign(0.084) TCGA-EE-A3AH-06 6 28472261 28472261 C T GPX6 Silent p.P158P 0.48 TCGA-EE-A3AH-06 6 32905009 32905009 C T HLA-DMB Missense_Mutation p.D188N 0.44 deleterious(0.01) possibly_damaging(0.719) TCGA-EE-A3AH-06 6 33052914 33052914 C T HLA-DPB1 Silent p.I184I 0.47 TCGA-EE-A3AH-06 6 36107085 36107085 G A MAPK13 Missense_Mutation p.E345K 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3AH-06 6 36981496 36981496 G A FGD2 Nonsense_Mutation p.W213* 0.33 TCGA-EE-A3AH-06 6 38690646 38690646 G A DNAH8 5'Flank 0.35 TCGA-EE-A3AH-06 6 38980370 38980370 G A DNAH8 Silent p.G4340G 0.40 TCGA-EE-A3AH-06 6 41248754 41248754 C T TREM1 Missense_Mutation p.D182N 0.40 tolerated(0.51) benign(0.034) TCGA-EE-A3AH-06 6 49754589 49754589 C T PGK2 Silent p.V104V 0.45 TCGA-EE-A3AH-06 6 54173277 54173277 C T TINAG 5'UTR 0.73 TCGA-EE-A3AH-06 6 55192369 55192369 T G GFRAL Missense_Mutation p.F6C 0.46 deleterious(0.01) benign(0.031) TCGA-EE-A3AH-06 6 6174883 6174883 G A F13A1 Silent p.T559T 0.36 TCGA-EE-A3AH-06 6 64422811 64422811 C T PHF3 Missense_Mutation p.P1776L 0.43 deleterious(0.03) benign(0.03) TCGA-EE-A3AH-06 6 76022865 76022865 C T FILIP1 Missense_Mutation p.G895R 0.38 tolerated(0.37) benign(0.005) TCGA-EE-A3AH-06 6 7606281 7606281 C T SNRNP48 Missense_Mutation p.S275L 0.36 deleterious(0) probably_damaging(0.948) TCGA-EE-A3AH-06 6 86324551 86324553 CAC - SYNCRIP In_Frame_Del p.G598del 0.42 TCGA-EE-A3AH-06 6 97562260 97562260 G A KLHL32 Missense_Mutation p.R410H 0.42 tolerated(0.06) possibly_damaging(0.888) TCGA-EE-A3AH-06 7 100683911 100683911 G T MUC17 Missense_Mutation p.D3072Y 0.68 probably_damaging(0.966) TCGA-EE-A3AH-06 7 102038085 102038085 C T PRKRIP1 Missense_Mutation p.P49S 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3AH-06 7 103191669 103191669 C T RELN Silent p.A2049A 0.71 TCGA-EE-A3AH-06 7 117180348 117180348 C T CFTR Missense_Mutation p.P355L 0.34 deleterious(0) possibly_damaging(0.715) TCGA-EE-A3AH-06 7 120739987 120739987 A G CPED1 Missense_Mutation p.T253A 0.62 tolerated(0.05) benign(0.294) TCGA-EE-A3AH-06 7 122839966 122839966 C T SLC13A1 Missense_Mutation p.R12Q 0.39 tolerated(0.18) benign(0.257) TCGA-EE-A3AH-06 7 12728487 12728487 C T ARL4A 3'UTR 0.57 TCGA-EE-A3AH-06 7 132192399 132192399 C T PLXNA4 Missense_Mutation p.E352K 0.64 tolerated(0.29) benign(0.315) TCGA-EE-A3AH-06 7 136700761 136700761 G A CHRM2 Silent p.K383K 0.64 TCGA-EE-A3AH-06 7 137237234 137237234 G A DGKI Silent p.P676P 0.62 TCGA-EE-A3AH-06 7 138239496 138239496 C T TRIM24 Missense_Mutation p.P439S 0.64 tolerated(0.05) possibly_damaging(0.493) TCGA-EE-A3AH-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.66 deleterious(0) probably_damaging(0.967) TCGA-EE-A3AH-06 7 141754626 141754626 C T MGAM Missense_Mutation p.P1078S 0.65 tolerated(0.66) benign(0.001) TCGA-EE-A3AH-06 7 141758123 141758123 C T MGAM Missense_Mutation p.P1272S 0.63 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AH-06 7 142120030 142120030 G A TRBV7-7 Missense_Mutation p.S46L 0.65 deleterious(0.04) probably_damaging(0.93) TCGA-EE-A3AH-06 7 143793010 143793010 G A OR2A12 Silent p.R270R 0.31 TCGA-EE-A3AH-06 7 1474304 1474304 G A MICALL2 Silent p.L881L 0.64 TCGA-EE-A3AH-06 7 148768085 148768085 G A ZNF786 Silent p.F593F 0.76 TCGA-EE-A3AH-06 7 150037221 150037221 T A RARRES2 Nonsense_Mutation p.K83* 0.64 TCGA-EE-A3AH-06 7 158109571 158109571 C T PTPRN2 Missense_Mutation p.E73K 0.75 deleterious(0.01) possibly_damaging(0.882) TCGA-EE-A3AH-06 7 16816728 16816728 C T TSPAN13 Missense_Mutation p.A98V 0.49 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3AH-06 7 16816729 16816729 C T TSPAN13 Silent p.A98A 0.48 TCGA-EE-A3AH-06 7 18066929 18066929 G A PRPS1L1 Silent p.I159I 0.30 TCGA-EE-A3AH-06 7 20418903 20418903 G A ITGB8 Silent p.R206R 0.62 TCGA-EE-A3AH-06 7 2583254 2583254 G A BRAT1 Missense_Mutation p.S258L 0.59 tolerated(0.75) benign(0.027) TCGA-EE-A3AH-06 7 27135280 27135280 C T HOXA1 Silent p.G84G 0.70 TCGA-EE-A3AH-06 7 32209531 32209531 G A PDE1C Silent p.I58I 0.62 TCGA-EE-A3AH-06 7 38574543 38574543 G A AMPH Silent p.F46F 0.30 TCGA-EE-A3AH-06 7 4056966 4056966 G A SDK1 Missense_Mutation p.E862K 0.40 tolerated(0.06) benign(0.349) TCGA-EE-A3AH-06 7 45016598 45016598 G A MYO1G Silent p.P56P 0.56 TCGA-EE-A3AH-06 7 48315402 48315402 G A ABCA13 Missense_Mutation p.E2047K 0.68 benign(0.001) TCGA-EE-A3AH-06 7 69364456 69364456 G A AUTS2 Missense_Mutation p.R165K 0.62 tolerated(0.6) benign(0.107) TCGA-EE-A3AH-06 7 70886063 70886063 G A WBSCR17 Missense_Mutation p.D312N 0.34 tolerated(0.12) possibly_damaging(0.808) TCGA-EE-A3AH-06 7 76144447 76144447 C T UPK3B Missense_Mutation p.P281L 0.43 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EE-A3AH-06 7 77006657 77006657 G A GSAP Silent p.F209F 0.29 TCGA-EE-A3AH-06 7 82390007 82390007 G A PCLO Missense_Mutation p.S5079L 0.39 unknown(0) TCGA-EE-A3AH-06 7 82457228 82457228 C T PCLO Nonsense_Mutation p.W4768* 0.52 TCGA-EE-A3AH-06 7 86521099 86521099 C T KIAA1324L Missense_Mutation p.E991K 0.62 deleterious(0) possibly_damaging(0.447) TCGA-EE-A3AH-06 7 92905653 92905653 C T CCDC132 Intron 0.47 TCGA-EE-A3AH-06 7 94054461 94054461 T C COL1A2 Silent p.P902P 0.51 TCGA-EE-A3AH-06 8 105463604 105463604 A T DPYS Missense_Mutation p.I98N 0.47 deleterious(0) probably_damaging(0.983) TCGA-EE-A3AH-06 8 109797321 109797321 G A TMEM74 Missense_Mutation p.L3F 0.50 deleterious(0) probably_damaging(0.976) TCGA-EE-A3AH-06 8 118147503 118147503 T C SLC30A8 5'Flank 0.54 TCGA-EE-A3AH-06 8 11994741 11994741 C T USP17L2 Missense_Mutation p.G510E 0.31 deleterious(0.05) possibly_damaging(0.702) TCGA-EE-A3AH-06 8 11995594 11995594 C T USP17L2 Missense_Mutation p.D226N 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A3AH-06 8 139144881 139144881 G A FAM135B Silent p.F1392F 0.43 TCGA-EE-A3AH-06 8 144812588 144812588 G A FAM83H Silent p.F55F 0.42 TCGA-EE-A3AH-06 8 144940451 144940451 G A EPPK1 Missense_Mutation p.A2324V 0.04 probably_damaging(0.984) TCGA-EE-A3AH-06 8 144944881 144944881 C T EPPK1 Silent p.R847R 0.57 TCGA-EE-A3AH-06 8 20004826 20004826 G A SLC18A1 Silent p.I469I 0.42 TCGA-EE-A3AH-06 8 24259437 24259437 C T ADAMDEC1 Silent p.F384F 0.43 TCGA-EE-A3AH-06 8 33449605 33449605 T G DUSP26 Missense_Mutation p.I188L 0.36 deleterious(0) benign(0.445) TCGA-EE-A3AH-06 8 39495113 39495113 G A ADAM18 Missense_Mutation p.E240K 0.55 tolerated(1) benign(0.003) TCGA-EE-A3AH-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.36 TCGA-EE-A3AH-06 8 48740752 48740752 G A PRKDC Missense_Mutation p.P2851S 0.33 probably_damaging(0.95) TCGA-EE-A3AH-06 8 55540733 55540733 G A RP1 Missense_Mutation p.E1431K 0.29 tolerated(1) benign(0) TCGA-EE-A3AH-06 8 6302515 6302516 - T MCPH1 Frame_Shift_Ins p.Y425Lfs*8 0.30 TCGA-EE-A3AH-06 8 69046338 69046338 C T PREX2 Missense_Mutation p.L1271F 0.50 deleterious(0.01) benign(0.394) TCGA-EE-A3AH-06 8 73848366 73848366 G A KCNB2 Nonsense_Mutation p.W259* 0.48 TCGA-EE-A3AH-06 8 73849983 73849983 C T KCNB2 Missense_Mutation p.S798L 0.36 tolerated_low_confidence(0.15) benign(0.027) TCGA-EE-A3AH-06 8 87060806 87060806 G A PSKH2 Missense_Mutation p.S348F 0.49 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A3AH-06 8 87165160 87165160 C T ATP6V0D2 Missense_Mutation p.S336L 0.41 deleterious(0.04) benign(0.04) TCGA-EE-A3AH-06 9 106901545 106901545 G A SMC2 Silent p.K1181K 0.33 TCGA-EE-A3AH-06 9 117853196 117853196 C T TNC Silent p.Q34Q 0.44 TCGA-EE-A3AH-06 9 119158837 119158837 G T PAPPA Missense_Mutation p.R1609L 0.42 tolerated(0.13) benign(0.25) TCGA-EE-A3AH-06 9 119625875 119625875 G A ASTN2 Missense_Mutation p.S625F 0.41 tolerated(0.12) unknown(0) TCGA-EE-A3AH-06 9 125316283 125316283 C T OR1N2 Missense_Mutation p.P279S 0.44 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A3AH-06 9 125391601 125391601 C T OR1B1 Missense_Mutation p.D72N 0.54 deleterious(0) probably_damaging(0.927) TCGA-EE-A3AH-06 9 134165543 134165543 T G PPAPDC3 Silent p.G53G 0.46 TCGA-EE-A3AH-06 9 136208597 136208597 G A MED22 Intron 0.59 TCGA-EE-A3AH-06 9 140728854 140728854 C T EHMT1 Silent p.F1198F 0.30 TCGA-EE-A3AH-06 9 21227840 21227840 T C IFNA17 Silent p.E111E 0.79 TCGA-EE-A3AH-06 9 34648802 34648802 C T GALT Missense_Mutation p.P244L 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A3AH-06 9 35610665 35610665 G A CD72 Missense_Mutation p.L346F 0.92 tolerated(0.16) possibly_damaging(0.679) TCGA-EE-A3AH-06 9 39177402 39177402 G A CNTNAP3 Silent p.L280L 0.83 TCGA-EE-A3AH-06 9 8341932 8341932 A G PTPRD Silent p.L1570L 0.92 TCGA-EE-A3AH-06 9 95062242 95062242 G A NOL8 Missense_Mutation p.R1078C 0.45 tolerated(0.12) benign(0.066) TCGA-EE-A3AH-06 X 105449830 105449830 G A MUM1L1 Silent p.R135R 0.84 TCGA-EE-A3AH-06 X 107850056 107850056 C T COL4A5 Missense_Mutation p.R777C 0.92 unknown(0) TCGA-EE-A3AH-06 X 135433683 135433683 G A GPR112 Missense_Mutation p.E2269K 0.98 tolerated(0.07) benign(0.006) TCGA-EE-A3AH-06 X 138630614 138630614 C T F9 Nonsense_Mutation p.R162* 0.94 TCGA-EE-A3AH-06 X 150349230 150349230 C T GPR50 Missense_Mutation p.S392F 0.94 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-EE-A3AH-06 X 1505546 1505546 C A SLC25A6 Missense_Mutation p.M282I 0.45 tolerated(0.24) benign(0.002) TCGA-EE-A3AH-06 X 150791487 150791487 G A PASD1 Missense_Mutation p.R166Q 0.89 tolerated(0.3) benign(0.066) TCGA-EE-A3AH-06 X 150908112 150908112 C T CNGA2 Silent p.F94F 0.95 TCGA-EE-A3AH-06 X 3261695 3261695 G A MXRA5 Silent p.I60I 0.94 TCGA-EE-A3AH-06 X 34150008 34150008 G A FAM47A Missense_Mutation p.P130S 0.94 tolerated(0.18) probably_damaging(0.986) TCGA-EE-A3AH-06 X 37965921 37965923 CTT - SYTL5 In_Frame_Del p.L434del 0.23 TCGA-EE-A3AH-06 X 37979702 37979702 C T SYTL5 Missense_Mutation p.P585L 0.87 deleterious(0) possibly_damaging(0.493) TCGA-EE-A3AH-06 X 83351247 83351247 G A RPS6KA6 Silent p.F642F 0.95 TCGA-EE-A3AH-06 Y 16734201 16734201 G A NLGN4Y Missense_Mutation p.G68S 0.98 tolerated(0.18) probably_damaging(0.998) TCGA-EE-A3AH-06 Y 16941773 16941773 G A NLGN4Y Silent p.E325E 1.00 TCGA-EE-A3AH-06 Y 23702640 23702640 C T RBMY1A1 Missense_Mutation p.P124S 0.19 deleterious(0.03) possibly_damaging(0.474) TCGA-EE-A3J3-06 10 12149948 12149948 C T DHTKD1 Silent p.L696L 0.63 TCGA-EE-A3J3-06 10 127738159 127738159 C T ADAM12 Silent p.S566S 0.60 TCGA-EE-A3J3-06 10 135053689 135053689 C T VENTX Missense_Mutation p.S219F 0.60 tolerated(0.14) benign(0.347) TCGA-EE-A3J3-06 10 55996643 55996643 G A PCDH15 Nonsense_Mutation p.Q309* 0.70 TCGA-EE-A3J3-06 10 60546785 60546785 T A BICC1 Missense_Mutation p.C164S 0.68 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J3-06 10 87487651 87487651 G A GRID1 Silent p.N498N 0.63 TCGA-EE-A3J3-06 11 102562686 102562686 C T MMP27 Silent p.K451K 0.61 TCGA-EE-A3J3-06 11 119155688 119155688 C T CBL Missense_Mutation p.P481S 0.70 deleterious(0.03) possibly_damaging(0.791) TCGA-EE-A3J3-06 11 119155689 119155689 C T CBL Missense_Mutation p.P481L 0.68 deleterious(0.01) possibly_damaging(0.811) TCGA-EE-A3J3-06 11 124440363 124440363 A C OR8A1 Silent p.T133T 0.19 TCGA-EE-A3J3-06 11 130059763 130059763 C T ST14 Silent p.S190S 0.57 TCGA-EE-A3J3-06 11 32452135 32452135 A G WT1 Intron 0.25 TCGA-EE-A3J3-06 11 33053931 33053931 G A DEPDC7 Silent p.K348K 0.79 TCGA-EE-A3J3-06 11 35454038 35454038 C T PAMR1 Missense_Mutation p.A694T 0.25 tolerated(0.21) benign(0.007) TCGA-EE-A3J3-06 11 380422 380422 G A B4GALNT4 Missense_Mutation p.G949E 0.77 deleterious(0) unknown(0) TCGA-EE-A3J3-06 11 46895101 46895101 G A LRP4 Nonsense_Mutation p.R1425* 0.69 TCGA-EE-A3J3-06 11 5510001 5510001 G A OR52D1 Missense_Mutation p.G22E 0.71 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J3-06 11 55322738 55322738 C T OR4C15 Missense_Mutation p.S319F 0.68 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-EE-A3J3-06 11 64974144 64974144 G A CAPN1 Missense_Mutation p.V522M 0.16 tolerated(0.12) benign(0.084) TCGA-EE-A3J3-06 11 6588882 6588882 G A DNHD1 Missense_Mutation p.R4048Q 0.78 benign(0.408) TCGA-EE-A3J3-06 12 11244556 11244556 G A TAS2R43 Silent p.I91I 0.14 TCGA-EE-A3J3-06 12 118517408 118517408 G A VSIG10 Missense_Mutation p.P223L 0.46 deleterious(0.03) benign(0.248) TCGA-EE-A3J3-06 12 122437829 122437829 C T WDR66 Silent p.L1072L 0.37 TCGA-EE-A3J3-06 12 18234224 18234224 C T RERGL Silent p.L173L 0.23 TCGA-EE-A3J3-06 12 48369116 48369116 G A COL2A1 Silent p.H1290H 0.17 TCGA-EE-A3J3-06 12 52788738 52788738 T A KRT82 3'UTR 0.46 TCGA-EE-A3J3-06 12 54799084 54799084 C T ITGA5 Missense_Mutation p.R364K 0.59 tolerated(0.22) probably_damaging(0.996) TCGA-EE-A3J3-06 12 57865815 57865815 G C GLI1 Missense_Mutation p.E1098Q 0.38 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J3-06 12 57958276 57958276 C T KIF5A Missense_Mutation p.R144C 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J3-06 12 86276226 86276226 G A NTS 3'UTR 0.34 TCGA-EE-A3J3-06 12 99071326 99071326 A T APAF1 Missense_Mutation p.L639F 0.15 deleterious(0.05) probably_damaging(0.913) TCGA-EE-A3J3-06 13 111137329 111137329 G A COL4A2 Missense_Mutation p.G994R 0.41 probably_damaging(0.928) TCGA-EE-A3J3-06 13 24890227 24890227 G A C1QTNF9 Missense_Mutation p.G29E 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3J3-06 13 33327526 33327526 C T PDS5B Silent p.S931S 0.38 TCGA-EE-A3J3-06 13 70413256 70413256 A G KLHL1 Silent p.N422N 0.37 TCGA-EE-A3J3-06 14 100317273 100317273 G A EML1 Missense_Mutation p.D51N 0.35 deleterious(0) possibly_damaging(0.671) TCGA-EE-A3J3-06 14 104195265 104195265 T C ZFYVE21 Missense_Mutation p.F127L 0.26 tolerated(0.79) benign(0.004) TCGA-EE-A3J3-06 14 20848535 20848535 G A TEP1 Missense_Mutation p.P1621L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3J3-06 14 21109263 21109263 C T OR6S1 Silent p.K196K 0.41 TCGA-EE-A3J3-06 14 23867965 23867965 G A MYH6 Silent p.L621L 0.12 TCGA-EE-A3J3-06 14 61180600 61180600 G A SIX4 Missense_Mutation p.P624L 0.15 deleterious_low_confidence(0) benign(0.084) TCGA-EE-A3J3-06 14 88477728 88477728 G A GPR65 Nonsense_Mutation p.W179* 0.45 TCGA-EE-A3J3-06 14 96152839 96152839 C T TCL1B Missense_Mutation p.P12L 0.50 tolerated(0.29) probably_damaging(0.999) TCGA-EE-A3J3-06 14 96152840 96152840 C T TCL1B Silent p.P12P 0.48 TCGA-EE-A3J3-06 15 30001210 30001210 G A TJP1 Missense_Mutation p.S1468F 0.64 deleterious_low_confidence(0.02) benign(0.005) TCGA-EE-A3J3-06 15 50544884 50544884 C T HDC Missense_Mutation p.G292E 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3J3-06 15 54306842 54306842 C T UNC13C Missense_Mutation p.S581F 0.32 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-EE-A3J3-06 15 65369261 65369261 C T KBTBD13 Silent p.F36F 0.56 TCGA-EE-A3J3-06 15 65497795 65497795 C T CILP Missense_Mutation p.R145H 0.16 tolerated(0.15) benign(0.009) TCGA-EE-A3J3-06 15 65917344 65917344 G A SLC24A1 Missense_Mutation p.G309E 0.65 probably_damaging(0.972) TCGA-EE-A3J3-06 15 72557446 72557446 G A PARP6 Missense_Mutation p.L102F 0.69 tolerated(0.07) benign(0.045) TCGA-EE-A3J3-06 15 73889472 73889472 G A NPTN Silent p.D110D 0.09 TCGA-EE-A3J3-06 16 2264143 2264143 G A PGP Silent p.I212I 0.43 TCGA-EE-A3J3-06 16 23497447 23497447 G A GGA2 Silent p.S229S 0.36 TCGA-EE-A3J3-06 16 23497448 23497448 G A GGA2 Missense_Mutation p.S229F 0.36 deleterious(0) probably_damaging(0.966) TCGA-EE-A3J3-06 16 28846473 28846473 C T ATXN2L Missense_Mutation p.P843L 0.35 deleterious(0.01) possibly_damaging(0.744) TCGA-EE-A3J3-06 16 32890574 32890574 G A SLC6A10P RNA 0.30 TCGA-EE-A3J3-06 16 68156976 68156976 C T NFATC3 Missense_Mutation p.S397L 0.35 deleterious(0) probably_damaging(0.989) TCGA-EE-A3J3-06 16 72828383 72828383 C T ZFHX3 Missense_Mutation p.R2733H 0.13 unknown(0) TCGA-EE-A3J3-06 16 81171090 81171090 C T PKD1L2 5'Flank 0.19 TCGA-EE-A3J3-06 16 846741 846741 C T CHTF18 Silent p.F827F 0.33 TCGA-EE-A3J3-06 17 10362568 10362568 C A MYH4 Missense_Mutation p.K529N 0.23 deleterious(0.01) benign(0.037) TCGA-EE-A3J3-06 17 10426843 10426843 C T MYH2 Silent p.G1814G 0.40 TCGA-EE-A3J3-06 17 19866217 19866217 A C AKAP10 Missense_Mutation p.S85R 0.33 tolerated_low_confidence(0.77) benign(0.011) TCGA-EE-A3J3-06 17 3618181 3618181 G A ITGAE Missense_Mutation p.A1167V 0.24 deleterious_low_confidence(0.01) benign(0.173) TCGA-EE-A3J3-06 17 40315654 40315654 C T KCNH4 Missense_Mutation p.G816E 0.54 tolerated(0.58) probably_damaging(1) TCGA-EE-A3J3-06 17 47294030 47294030 G A ABI3 Silent p.Q85Q 0.33 TCGA-EE-A3J3-06 17 47296976 47296976 C T ABI3 Silent p.S179S 0.45 TCGA-EE-A3J3-06 17 5984093 5984093 C T WSCD1 Missense_Mutation p.R39C 0.69 tolerated(0.18) possibly_damaging(0.794) TCGA-EE-A3J3-06 17 63533688 63533688 G A AXIN2 Missense_Mutation p.P489L 0.42 tolerated(0.13) benign(0.22) TCGA-EE-A3J3-06 17 72368513 72368513 G A GPR142 Missense_Mutation p.R388Q 0.34 tolerated(0.08) benign(0.121) TCGA-EE-A3J3-06 17 72368514 72368514 G A GPR142 Silent p.R388R 0.34 TCGA-EE-A3J3-06 17 8415804 8415804 G A MYH10 Nonsense_Mutation p.Q973* 0.23 TCGA-EE-A3J3-06 17 9541993 9541994 - A WDR16 Frame_Shift_Ins p.F515Vfs*19 0.13 TCGA-EE-A3J3-06 18 14478215 14478215 C T CXADRP3 RNA 0.82 TCGA-EE-A3J3-06 19 12384185 12384185 G A ZNF44 Silent p.S343S 0.30 TCGA-EE-A3J3-06 19 18232549 18232549 C T MAST3 Silent p.L42L 0.37 TCGA-EE-A3J3-06 19 20236224 20236224 C T CTC-260E6.2 RNA 0.26 TCGA-EE-A3J3-06 19 23329273 23329273 G A ZNF730 Missense_Mutation p.G476E 0.38 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A3J3-06 19 38857942 38857942 C T CATSPERG Silent p.L920L 0.36 TCGA-EE-A3J3-06 19 38942423 38942423 G A RYR1 Missense_Mutation p.G381D 0.44 probably_damaging(1) TCGA-EE-A3J3-06 19 40093175 40093175 C T LGALS13 5'UTR 0.22 TCGA-EE-A3J3-06 19 4550813 4550813 G A SEMA6B Silent p.P373P 0.38 TCGA-EE-A3J3-06 19 46522828 46522828 C T PGLYRP1 Nonsense_Mutation p.W122* 0.37 TCGA-EE-A3J3-06 19 48578067 48578067 G A PLA2G4C Silent p.S331S 0.35 TCGA-EE-A3J3-06 19 48578068 48578068 G A PLA2G4C Missense_Mutation p.S331F 0.35 deleterious(0) possibly_damaging(0.57) TCGA-EE-A3J3-06 19 49106808 49106808 G A FAM83E Silent p.S373S 0.36 TCGA-EE-A3J3-06 19 52619644 52619644 C G ZNF616 Missense_Mutation p.R258T 0.16 tolerated(0.7) benign(0.076) TCGA-EE-A3J3-06 19 55098858 55098858 G A LILRA2 3'UTR 0.46 TCGA-EE-A3J3-06 19 56466570 56466570 C T NLRP8 Silent p.F382F 0.32 TCGA-EE-A3J3-06 19 56935571 56935571 C T ZNF583 Missense_Mutation p.T515I 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A3J3-06 19 6711045 6711045 G A C3 Nonsense_Mutation p.R478* 0.30 TCGA-EE-A3J3-06 19 856086 856086 C T ELANE Silent p.I242I 0.35 TCGA-EE-A3J3-06 19 9061470 9061470 G A MUC16 Missense_Mutation p.S8659F 0.37 unknown(0) TCGA-EE-A3J3-06 1 100856301 100856301 C G CDC14A Nonsense_Mutation p.S77* 0.21 TCGA-EE-A3J3-06 1 114454474 114454474 G A DCLRE1B Silent p.K420K 0.22 TCGA-EE-A3J3-06 1 11907789 11907789 C T NPPA 5'UTR 0.14 TCGA-EE-A3J3-06 1 12460273 12460273 C T VPS13D Silent p.F3890F 0.50 TCGA-EE-A3J3-06 1 151341502 151341502 G A SELENBP1 Missense_Mutation p.P113L 0.37 tolerated(0.17) benign(0.042) TCGA-EE-A3J3-06 1 152191067 152191067 C T HRNR Missense_Mutation p.R1013Q 0.42 unknown(0) TCGA-EE-A3J3-06 1 157660220 157660220 C T FCRL3 Silent p.P505P 0.41 TCGA-EE-A3J3-06 1 158597469 158597469 G A SPTA1 Silent p.V1870V 0.37 TCGA-EE-A3J3-06 1 158725180 158725180 C T OR6K6 Missense_Mutation p.S192F 0.42 tolerated(0.31) benign(0.013) TCGA-EE-A3J3-06 1 160000335 160000335 T G PIGM Missense_Mutation p.I399L 0.17 tolerated(0.07) benign(0.301) TCGA-EE-A3J3-06 1 160385937 160385937 C T VANGL2 Silent p.L53L 0.05 TCGA-EE-A3J3-06 1 173702872 173702872 G A KLHL20 Missense_Mutation p.G15E 0.32 deleterious_low_confidence(0) benign(0.213) TCGA-EE-A3J3-06 1 175332892 175332892 G A TNR Missense_Mutation p.P887S 0.34 deleterious(0.03) probably_damaging(1) TCGA-EE-A3J3-06 1 175375841 175375841 C T TNR Missense_Mutation p.D4N 0.40 deleterious_low_confidence(0.01) benign(0.125) TCGA-EE-A3J3-06 1 179870514 179870514 G C TOR1AIP1 Missense_Mutation p.E244Q 0.22 deleterious_low_confidence(0.03) benign(0.171) TCGA-EE-A3J3-06 1 182356327 182356327 G T GLUL Missense_Mutation p.F89L 0.39 deleterious(0.04) possibly_damaging(0.791) TCGA-EE-A3J3-06 1 190068164 190068164 G A BRINP3 Missense_Mutation p.P429S 0.42 tolerated(0.22) benign(0.057) TCGA-EE-A3J3-06 1 196883755 196883755 C T CFHR4 Silent p.S436S 0.36 TCGA-EE-A3J3-06 1 203148906 203148906 C T CHI3L1 Missense_Mutation p.E332K 0.41 tolerated(0.6) benign(0.048) TCGA-EE-A3J3-06 1 204513760 204513760 C T MDM4 Missense_Mutation p.A257V 0.41 tolerated(0.16) benign(0.06) TCGA-EE-A3J3-06 1 204942404 204942404 C A NFASC Nonsense_Mutation p.S379* 0.05 TCGA-EE-A3J3-06 1 223987607 223987607 A C TP53BP2 Missense_Mutation p.D493E 0.43 tolerated(0.2) probably_damaging(0.996) TCGA-EE-A3J3-06 1 228109590 228109590 G C WNT9A Missense_Mutation p.L243V 0.19 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J3-06 1 228482117 228482117 G T OBSCN Splice_Site p.X4228_splice 0.34 TCGA-EE-A3J3-06 1 230930937 230930937 G T CAPN9 Missense_Mutation p.Q633H 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3J3-06 1 23232557 23232557 G A EPHB2 Missense_Mutation p.E616K 0.48 deleterious(0) possibly_damaging(0.565) TCGA-EE-A3J3-06 1 232941651 232941651 C T MAP10 Silent p.S294S 0.31 TCGA-EE-A3J3-06 1 248224856 248224856 G A OR2L3 Silent p.L291L 0.41 TCGA-EE-A3J3-06 1 248652040 248652040 C T OR2T5 Missense_Mutation p.L51F 0.18 tolerated(0.37) benign(0.033) TCGA-EE-A3J3-06 1 2938503 2938503 G A ACTRT2 Missense_Mutation p.D85N 0.26 tolerated(0.06) possibly_damaging(0.558) TCGA-EE-A3J3-06 1 89582841 89582841 G A GBP2 Silent p.F234F 0.23 TCGA-EE-A3J3-06 20 31657760 31657760 C T BPIFB3 Missense_Mutation p.R406W 0.40 deleterious(0.03) benign(0.031) TCGA-EE-A3J3-06 20 3214214 3214214 C A SLC4A11 Silent p.G268G 0.36 TCGA-EE-A3J3-06 20 33862257 33862257 G A MMP24 Missense_Mutation p.D595N 0.42 tolerated(0.42) probably_damaging(0.985) TCGA-EE-A3J3-06 20 43851398 43851398 G A SEMG2 Silent p.S375S 0.38 TCGA-EE-A3J3-06 20 44207862 44207862 C T WFDC8 Missense_Mutation p.G9R 0.34 tolerated(0.55) benign(0.001) TCGA-EE-A3J3-06 20 45867868 45867868 G A ZMYND8 Missense_Mutation p.P767S 0.47 deleterious_low_confidence(0) benign(0.236) TCGA-EE-A3J3-06 20 50401095 50401095 G A SALL4 Silent p.I957I 0.41 TCGA-EE-A3J3-06 21 41648177 41648177 G A DSCAM Nonsense_Mutation p.Q735* 0.29 TCGA-EE-A3J3-06 21 43309194 43309194 G A C2CD2 3'UTR 0.18 TCGA-EE-A3J3-06 22 32650130 32650130 G C SLC5A4 Missense_Mutation p.P69R 0.32 deleterious(0) probably_damaging(0.958) TCGA-EE-A3J3-06 2 100623722 100623722 G A AFF3 Silent p.I150I 0.31 TCGA-EE-A3J3-06 2 119731990 119731990 G A MARCO Missense_Mutation p.G181E 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J3-06 2 121742146 121742146 G A GLI2 Missense_Mutation p.V595I 0.21 tolerated(0.2) probably_damaging(0.987) TCGA-EE-A3J3-06 2 121747944 121747944 C T GLI2 Missense_Mutation p.P1485L 0.28 tolerated(0.09) benign(0.351) TCGA-EE-A3J3-06 2 138033548 138033548 G A THSD7B Missense_Mutation p.G818R 0.47 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A3J3-06 2 139428696 139428696 C T NXPH2 Silent p.A197A 0.24 TCGA-EE-A3J3-06 2 163236481 163236481 C T KCNH7 Missense_Mutation p.E1005K 0.27 tolerated(0.51) benign(0) TCGA-EE-A3J3-06 2 168103356 168103356 G A XIRP2 Silent p.K1818K 0.35 TCGA-EE-A3J3-06 2 17699187 17699187 C T RAD51AP2 Missense_Mutation p.D166N 0.42 tolerated(0.43) benign(0.029) TCGA-EE-A3J3-06 2 192252018 192252018 C T MYO1B Silent p.A541A 0.30 TCGA-EE-A3J3-06 2 196659167 196659167 C T DNAH7 Silent p.V3537V 0.22 TCGA-EE-A3J3-06 2 204131388 204131388 A G CYP20A1 Missense_Mutation p.Q195R 0.41 tolerated(1) benign(0.006) TCGA-EE-A3J3-06 2 209302538 209302538 T C PTH2R Silent p.L115L 0.36 TCGA-EE-A3J3-06 2 214794769 214794769 G A SPAG16 Missense_Mutation p.G434R 0.29 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3J3-06 2 219747084 219747084 G A WNT10A Nonsense_Mutation p.W105* 0.26 TCGA-EE-A3J3-06 2 220082977 220082977 A C ABCB6 Missense_Mutation p.I140S 0.27 tolerated(0.78) benign(0.022) TCGA-EE-A3J3-06 2 233322363 233322363 G A ALPI Missense_Mutation p.R246K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J3-06 2 33952207 33952207 G A AC009499.1 Intron 0.33 TCGA-EE-A3J3-06 2 43514128 43514128 G A THADA Missense_Mutation p.P1695S 0.41 tolerated(0.16) benign(0.031) TCGA-EE-A3J3-06 2 61719317 61719317 G C XPO1 Silent p.V580V 0.37 TCGA-EE-A3J3-06 2 71791234 71791234 A G DYSF Missense_Mutation p.D819G 0.38 tolerated(0.07) benign(0.001) TCGA-EE-A3J3-06 3 111426916 111426916 C T PLCXD2 Nonsense_Mutation p.R103* 0.69 TCGA-EE-A3J3-06 3 121712385 121712385 C T ILDR1 Missense_Mutation p.R404H 0.80 tolerated(0.51) benign(0) TCGA-EE-A3J3-06 3 123023025 123023025 G A ADCY5 Silent p.F816F 0.71 TCGA-EE-A3J3-06 3 151105887 151105887 G A MED12L Missense_Mutation p.G1758E 0.75 tolerated(0.19) possibly_damaging(0.651) TCGA-EE-A3J3-06 3 33576729 33576729 A C CLASP2 Silent p.P1269P 0.58 TCGA-EE-A3J3-06 3 40442420 40442420 C T ENTPD3 Silent p.T68T 0.79 TCGA-EE-A3J3-06 3 52356434 52356434 C A DNAH1 5'UTR 0.87 TCGA-EE-A3J3-06 3 9780745 9780745 A G BRPF1 Missense_Mutation p.D221G 0.75 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J3-06 4 1107151 1107151 G A RNF212 Silent p.L34L 0.35 TCGA-EE-A3J3-06 4 151505096 151505096 G T MAB21L2 Silent p.L305L 0.14 TCGA-EE-A3J3-06 4 2355696 2355696 C T ZFYVE28 Silent p.R48R 0.42 TCGA-EE-A3J3-06 4 26483482 26483482 G A CCKAR Silent p.I355I 0.31 TCGA-EE-A3J3-06 4 44176989 44176989 G T KCTD8 Missense_Mutation p.Q414K 0.09 tolerated(0.53) possibly_damaging(0.857) TCGA-EE-A3J3-06 4 55144678 55144678 C T PDGFRA Missense_Mutation p.R718W 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J3-06 4 56876019 56876019 G A CEP135 Missense_Mutation p.E819K 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J3-06 4 70146376 70146376 T G UGT2B28 Missense_Mutation p.V53G 0.24 deleterious(0) probably_damaging(0.969) TCGA-EE-A3J3-06 4 74274517 74274517 G A ALB Silent p.L159L 0.28 TCGA-EE-A3J3-06 4 88902885 88902885 C T SPP1 Nonsense_Mutation p.R159* 0.42 TCGA-EE-A3J3-06 5 1341922 1341922 G A CLPTM1L Missense_Mutation p.A106V 0.38 tolerated(0.28) benign(0.306) TCGA-EE-A3J3-06 5 140188964 140188964 C T PCDHA4 Missense_Mutation p.A731V 0.20 tolerated_low_confidence(0.33) benign(0.003) TCGA-EE-A3J3-06 5 140216017 140216017 G A PCDHA7 Silent p.S683S 0.34 TCGA-EE-A3J3-06 5 140552415 140552415 G A PCDHB7 5'UTR 0.36 TCGA-EE-A3J3-06 5 140625713 140625713 G A PCDHB15 Silent p.R189R 0.45 TCGA-EE-A3J3-06 5 162910053 162910053 A G HMMR Silent p.S520S 0.40 TCGA-EE-A3J3-06 5 167642213 167642213 C G TENM2 Silent p.P1338P 0.26 TCGA-EE-A3J3-06 5 170827906 170827906 C T NPM1 Missense_Mutation p.P216S 0.36 tolerated(0.06) benign(0.257) TCGA-EE-A3J3-06 5 38370440 38370440 C T EGFLAM Silent p.I196I 0.33 TCGA-EE-A3J3-06 5 64907555 64907555 C T TRIM23 Missense_Mutation p.E174K 0.39 tolerated(0.09) probably_damaging(0.913) TCGA-EE-A3J3-06 5 70805733 70805733 C T BDP1 Silent p.S938S 0.34 TCGA-EE-A3J3-06 5 79025950 79025950 C T CMYA5 Silent p.D454D 0.40 TCGA-EE-A3J3-06 6 100841664 100841664 G A SIM1 Silent p.A423A 0.59 TCGA-EE-A3J3-06 6 114379025 114379025 G A HS3ST5 Missense_Mutation p.S146F 0.65 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J3-06 6 12120417 12120417 C T HIVEP1 Missense_Mutation p.S130F 0.09 tolerated(0.08) benign(0.046) TCGA-EE-A3J3-06 6 15533577 15533577 G C DTNBP1 Silent p.T187T 0.10 TCGA-EE-A3J3-06 6 161560467 161560467 G A AGPAT4 Silent p.L343L 0.58 TCGA-EE-A3J3-06 6 32037368 32037368 C T TNXB Missense_Mutation p.G1850D 0.86 benign(0.017) TCGA-EE-A3J3-06 6 38899616 38899616 C A DNAH8 Silent p.I3551I 0.43 TCGA-EE-A3J3-06 6 44114650 44114650 C T TMEM63B Silent p.F283F 0.17 TCGA-EE-A3J3-06 6 49754324 49754324 C T PGK2 Missense_Mutation p.E193K 0.81 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J3-06 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.79 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J3-06 7 100350192 100350192 C T ZAN Missense_Mutation p.P822S 0.44 unknown(0) TCGA-EE-A3J3-06 7 101950084 101950084 G A SH2B2 Silent p.K313K 0.38 TCGA-EE-A3J3-06 7 129765758 129765758 C T KLHDC10 Silent p.P306P 0.37 TCGA-EE-A3J3-06 7 130353978 130353978 C T TSGA13 Missense_Mutation p.R235Q 0.52 tolerated(0.1) benign(0.417) TCGA-EE-A3J3-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J3-06 7 2946238 2946238 G A CARD11 3'UTR 0.31 TCGA-EE-A3J3-06 7 72721484 72721484 C T NSUN5 Missense_Mutation p.R136Q 0.18 deleterious(0) probably_damaging(0.972) TCGA-EE-A3J3-06 7 91865832 91865832 G A KRIT1 Missense_Mutation p.P127L 0.37 deleterious(0.01) benign(0.421) TCGA-EE-A3J3-06 7 94217968 94217968 C T SGCE Intron 0.42 TCGA-EE-A3J3-06 8 10159055 10159055 C T MSRA Missense_Mutation p.H115Y 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3J3-06 8 105361141 105361141 C T DCSTAMP Missense_Mutation p.L121F 0.24 deleterious(0.03) possibly_damaging(0.54) TCGA-EE-A3J3-06 8 110503293 110503293 C A PKHD1L1 Missense_Mutation p.D3359E 0.14 tolerated(0.44) possibly_damaging(0.795) TCGA-EE-A3J3-06 8 143570401 143570401 G A BAI1 Missense_Mutation p.D820N 0.30 deleterious(0) possibly_damaging(0.831) TCGA-EE-A3J3-06 8 143822586 143822586 C T SLURP1 Missense_Mutation p.R96Q 0.54 tolerated(0.34) benign(0.035) TCGA-EE-A3J3-06 8 144809676 144809676 G A FAM83H Missense_Mutation p.P652L 0.62 tolerated(0.16) benign(0.001) TCGA-EE-A3J3-06 8 3216851 3216851 C T CSMD1 Missense_Mutation p.E1043K 0.68 probably_damaging(0.998) TCGA-EE-A3J3-06 8 42611246 42611246 C T CHRNA6 Missense_Mutation p.G366S 0.56 tolerated(0.65) benign(0.007) TCGA-EE-A3J3-06 8 43212112 43212112 C T POTEA RNA 0.25 TCGA-EE-A3J3-06 8 53580634 53580634 G A RB1CC1 Nonsense_Mutation p.Q374* 0.57 TCGA-EE-A3J3-06 8 6302915 6302915 C T MCPH1 Silent p.L558L 0.59 TCGA-EE-A3J3-06 8 69621313 69621313 C T C8orf34 Silent p.F442F 0.23 TCGA-EE-A3J3-06 9 125562678 125562678 A C OR1K1 Missense_Mutation p.I93L 0.36 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J3-06 9 136339154 136339154 G A SLC2A6 Silent p.I328I 0.41 TCGA-EE-A3J3-06 9 71869274 71869274 G A TJP2 Missense_Mutation p.R1217Q 0.23 tolerated_low_confidence(0.27) possibly_damaging(0.637) TCGA-EE-A3J3-06 9 94487029 94487029 C T ROR2 Missense_Mutation p.V583M 0.59 deleterious(0.04) possibly_damaging(0.889) TCGA-EE-A3J3-06 9 94487030 94487030 C T ROR2 Silent p.T582T 0.52 TCGA-EE-A3J3-06 X 106396494 106396494 T C NUP62CL Silent p.E146E 0.80 TCGA-EE-A3J3-06 X 114141216 114141216 G A HTR2C Silent p.T205T 0.81 TCGA-EE-A3J3-06 X 150349430 150349430 C T GPR50 Missense_Mutation p.H459Y 0.77 tolerated_low_confidence(0.27) benign(0.016) TCGA-EE-A3J3-06 X 151909159 151909159 G A CSAG1 Missense_Mutation p.R63K 0.75 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-EE-A3J3-06 X 73067839 73067839 G A XIST RNA 0.79 TCGA-EE-A3J3-06 X 73070880 73070880 G A XIST RNA 0.76 TCGA-EE-A3J4-06 10 104174701 104174701 C T PSD Missense_Mutation p.G348D 0.72 deleterious(0.04) benign(0.001) TCGA-EE-A3J4-06 10 123842764 123842764 C T TACC2 Missense_Mutation p.P250L 0.93 benign(0.035) TCGA-EE-A3J4-06 10 131506200 131506200 C T MGMT Missense_Mutation p.P87L 0.76 deleterious(0.02) possibly_damaging(0.638) TCGA-EE-A3J4-06 10 13275623 13275623 C T UCMA Silent p.Q45Q 0.72 TCGA-EE-A3J4-06 10 395372 395372 G A DIP2C Missense_Mutation p.T1003I 0.78 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J4-06 10 44052281 44052281 G A ZNF239 Missense_Mutation p.S416F 0.66 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 10 50952707 50952707 G A OGDHL Missense_Mutation p.S574F 0.79 deleterious(0) probably_damaging(0.957) TCGA-EE-A3J4-06 10 61834107 61834107 G A ANK3 Missense_Mutation p.P2178S 0.72 probably_damaging(0.992) TCGA-EE-A3J4-06 10 96454787 96454787 G A CYP2C18 Missense_Mutation p.E199K 0.68 tolerated(0.62) benign(0.008) TCGA-EE-A3J4-06 11 100933232 100933232 G A PGR Nonsense_Mutation p.Q720* 0.39 TCGA-EE-A3J4-06 11 103908172 103908172 C T DDI1 Missense_Mutation p.R208W 0.49 deleterious(0.04) benign(0.121) TCGA-EE-A3J4-06 11 1096345 1096345 G A MUC2 Missense_Mutation p.D2124N 0.34 unknown(0) TCGA-EE-A3J4-06 11 110104105 110104105 T C RDX Missense_Mutation p.T482A 0.48 tolerated(0.82) benign(0.001) TCGA-EE-A3J4-06 11 118344458 118344458 C T KMT2A Nonsense_Mutation p.R862* 0.35 TCGA-EE-A3J4-06 11 118925230 118925230 C T HYOU1 Silent p.R218R 0.40 TCGA-EE-A3J4-06 11 120111042 120111042 C T POU2F3 Intron 0.21 TCGA-EE-A3J4-06 11 123993685 123993685 C T VWA5A Missense_Mutation p.P260L 0.35 deleterious(0) possibly_damaging(0.781) TCGA-EE-A3J4-06 11 124253052 124253052 A C OR8B2 Missense_Mutation p.L63R 0.07 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-EE-A3J4-06 11 124267060 124267060 A C OR8B3 Missense_Mutation p.L63R 0.32 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-EE-A3J4-06 11 129722390 129722390 A C TMEM45B Missense_Mutation p.K5Q 0.42 tolerated(0.09) benign(0.271) TCGA-EE-A3J4-06 11 129722409 129722409 G A TMEM45B Missense_Mutation p.G11E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 11 130275743 130275743 G A ADAMTS8 Missense_Mutation p.P794S 0.41 tolerated(0.39) benign(0.01) TCGA-EE-A3J4-06 11 15260488 15260488 C T INSC Silent p.L468L 0.40 TCGA-EE-A3J4-06 11 22391586 22391586 A T SLC17A6 Missense_Mutation p.K298I 0.58 tolerated(0.12) benign(0.141) TCGA-EE-A3J4-06 11 22399331 22399331 C T SLC17A6 3'UTR 0.27 TCGA-EE-A3J4-06 11 26586930 26586930 T A MUC15 Missense_Mutation p.K186I 0.47 deleterious_low_confidence(0.02) benign(0.196) TCGA-EE-A3J4-06 11 47283529 47283529 C T NR1H3 Silent p.L316L 0.39 TCGA-EE-A3J4-06 11 5068426 5068426 G A OR52J3 Missense_Mutation p.R224H 0.44 tolerated(0.57) benign(0.008) TCGA-EE-A3J4-06 11 5537331 5537331 C T UBQLNL Missense_Mutation p.R114Q 0.14 tolerated(1) benign(0) TCGA-EE-A3J4-06 11 55999715 55999715 A T OR5T2 Missense_Mutation p.F316Y 0.44 deleterious(0) probably_damaging(0.989) TCGA-EE-A3J4-06 11 5602625 5602625 C T OR52B6 Silent p.I173I 0.43 TCGA-EE-A3J4-06 11 56344433 56344433 G A OR5M10 Silent p.L255L 0.37 TCGA-EE-A3J4-06 11 5799168 5799168 C T OR52N5 Missense_Mutation p.A233T 0.37 tolerated(0.22) possibly_damaging(0.764) TCGA-EE-A3J4-06 11 62373339 62373339 G A EML3 Silent p.S590S 0.42 TCGA-EE-A3J4-06 11 63072305 63072305 C T SLC22A10 Silent p.L514L 0.36 TCGA-EE-A3J4-06 11 63283073 63283073 C T LGALS12 Missense_Mutation p.P252L 0.48 tolerated(0.07) benign(0.05) TCGA-EE-A3J4-06 11 67050673 67050673 C T ADRBK1 Silent p.N434N 0.34 TCGA-EE-A3J4-06 11 67050674 67050674 C T ADRBK1 Missense_Mutation p.R435W 0.34 deleterious(0) possibly_damaging(0.567) TCGA-EE-A3J4-06 11 68331883 68331883 C T PPP6R3 Silent p.L320L 0.42 TCGA-EE-A3J4-06 11 6964314 6964314 G A ZNF215 Missense_Mutation p.E162K 0.40 tolerated(0.06) benign(0.069) TCGA-EE-A3J4-06 11 77409601 77409601 A T RSF1 Missense_Mutation p.S882R 0.42 tolerated(0.1) benign(0.372) TCGA-EE-A3J4-06 12 11506847 11506847 C T PRB1 Missense_Mutation p.G64R 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3J4-06 12 131357380 131357380 G T RAN Splice_Site p.X13_splice 0.35 TCGA-EE-A3J4-06 12 13716997 13716997 C T GRIN2B Missense_Mutation p.D1059N 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 12 22089526 22089526 G A ABCC9 Missense_Mutation p.A28V 0.46 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A3J4-06 12 48134173 48134173 T G RAPGEF3 Missense_Mutation p.K746T 0.18 deleterious(0) probably_damaging(0.929) TCGA-EE-A3J4-06 12 5154519 5154519 C T KCNA5 Silent p.I402I 0.34 TCGA-EE-A3J4-06 12 52992816 52992816 C T KRT72 Silent p.R169R 0.39 TCGA-EE-A3J4-06 12 54912491 54912491 C T NCKAP1L Silent p.I465I 0.35 TCGA-EE-A3J4-06 12 55715321 55715321 G A OR6C1 Silent p.%3D 0.48 TCGA-EE-A3J4-06 12 55945508 55945508 C T OR6C4 Silent p.F166F 0.43 TCGA-EE-A3J4-06 12 57486350 57486350 C T NAB2 Silent p.S359S 0.43 TCGA-EE-A3J4-06 12 57486351 57486351 T A NAB2 Missense_Mutation p.L360M 0.44 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A3J4-06 12 57859426 57859426 C T GLI1 Missense_Mutation p.R191W 0.52 deleterious(0.03) benign(0.339) TCGA-EE-A3J4-06 12 63087742 63087742 G A PPM1H Missense_Mutation p.P371S 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 12 70988325 70988325 G A PTPRB Missense_Mutation p.P480S 0.40 tolerated(0.08) benign(0.111) TCGA-EE-A3J4-06 12 75698579 75698579 A C CAPS2 Missense_Mutation p.M265R 0.35 tolerated(0.69) benign(0) TCGA-EE-A3J4-06 12 77417694 77417694 G A E2F7 3'UTR 0.45 TCGA-EE-A3J4-06 12 78513269 78513269 A T NAV3 Missense_Mutation p.K1098I 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 12 85492135 85492135 G A LRRIQ1 Missense_Mutation p.G964S 0.44 tolerated(0.22) probably_damaging(0.93) TCGA-EE-A3J4-06 12 94692474 94692474 C T PLXNC1 Missense_Mutation p.P1381S 0.42 deleterious(0) probably_damaging(0.973) TCGA-EE-A3J4-06 13 113174230 113174230 G A TUBGCP3 Silent p.I617I 0.41 TCGA-EE-A3J4-06 13 114322097 114322097 G A GRK1 Silent p.A132A 0.18 TCGA-EE-A3J4-06 13 115064428 115064428 C A UPF3A Silent p.V320V 0.09 TCGA-EE-A3J4-06 13 20797188 20797188 G A GJB6 Silent p.I144I 0.43 TCGA-EE-A3J4-06 13 21729178 21729178 G A SKA3 3'UTR 0.62 TCGA-EE-A3J4-06 13 25285722 25285722 C G ATP12A 3'UTR 0.42 TCGA-EE-A3J4-06 13 25435432 25435432 T G RNF17 Silent p.T1267T 0.21 TCGA-EE-A3J4-06 13 25459515 25459515 G A CENPJ Missense_Mutation p.P1126S 0.30 tolerated(0.14) benign(0.022) TCGA-EE-A3J4-06 13 28636041 28636041 A C FLT3 Missense_Mutation p.S111A 0.34 tolerated(0.37) benign(0) TCGA-EE-A3J4-06 13 52523799 52523799 G A ATP7B Missense_Mutation p.P955L 0.37 deleterious(0.05) probably_damaging(0.911) TCGA-EE-A3J4-06 13 52701737 52701737 A G NEK5 5'UTR 0.31 TCGA-EE-A3J4-06 13 52951929 52951929 G A THSD1 Missense_Mutation p.P726S 0.45 tolerated(0.4) benign(0.009) TCGA-EE-A3J4-06 13 84454874 84454874 C T SLITRK1 Missense_Mutation p.E257K 0.38 tolerated(1) benign(0.002) TCGA-EE-A3J4-06 14 101318777 101318777 G A MIR770 RNA 0.51 TCGA-EE-A3J4-06 14 106725437 106725437 G A IGHV3-23 Missense_Mutation p.L39F 0.28 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-EE-A3J4-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A3J4-06 14 20404752 20404752 G A OR4K1 Nonsense_Mutation p.W309* 0.12 TCGA-EE-A3J4-06 14 28733756 28733756 C T BNIP3P1 RNA 0.53 TCGA-EE-A3J4-06 14 31856331 31856331 A C HEATR5A Missense_Mutation p.V102G 0.54 tolerated(0.36) benign(0.237) TCGA-EE-A3J4-06 14 32586368 32586368 T G ARHGAP5 Missense_Mutation p.F1247C 0.45 tolerated(0.09) possibly_damaging(0.631) TCGA-EE-A3J4-06 14 61915896 61915896 G A PRKCH Missense_Mutation p.V210I 0.05 tolerated(0.33) probably_damaging(0.999) TCGA-EE-A3J4-06 14 65007526 65007526 C T HSPA2 5'UTR 0.45 TCGA-EE-A3J4-06 14 67812508 67812508 G A ATP6V1D Silent p.L145L 0.46 TCGA-EE-A3J4-06 14 69847262 69847262 C G ERH Missense_Mutation p.G103A 0.36 tolerated_low_confidence(0.11) benign(0.003) TCGA-EE-A3J4-06 14 71542944 71542944 G A PCNX Silent p.E1715E 0.22 TCGA-EE-A3J4-06 14 89151388 89151388 T C EML5 Missense_Mutation p.K985E 0.38 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J4-06 14 94007138 94007138 C T UNC79 Silent p.H318H 0.26 TCGA-EE-A3J4-06 14 94044293 94044293 C T UNC79 Missense_Mutation p.R596C 0.60 deleterious(0.02) possibly_damaging(0.685) TCGA-EE-A3J4-06 14 94708227 94708227 C T PPP4R4 Missense_Mutation p.P360L 0.37 tolerated(0.37) benign(0.004) TCGA-EE-A3J4-06 15 20488793 20488793 C T CHEK2P2 RNA 0.12 TCGA-EE-A3J4-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.45 deleterious_low_confidence(0.01) benign(0.118) TCGA-EE-A3J4-06 15 43363004 43363004 T A UBR1 Missense_Mutation p.E216D 0.36 tolerated(0.58) benign(0.018) TCGA-EE-A3J4-06 15 63353939 63353939 G C TPM1 Intron 0.03 TCGA-EE-A3J4-06 15 73615206 73615206 G C HCN4 Silent p.P1076P 0.12 TCGA-EE-A3J4-06 15 81584972 81584972 C T IL16 Missense_Mutation p.P499L 0.25 tolerated(0.44) benign(0.004) TCGA-EE-A3J4-06 15 85400628 85400628 C T ALPK3 Missense_Mutation p.P1089S 0.36 tolerated_low_confidence(0.14) benign(0.008) TCGA-EE-A3J4-06 15 89401708 89401708 C T ACAN Silent p.L1964L 0.52 TCGA-EE-A3J4-06 15 90764696 90764696 C T SEMA4B Silent p.S231S 0.38 TCGA-EE-A3J4-06 15 93588422 93588422 C T RGMA Missense_Mutation p.D395N 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 16 14029557 14029557 C T ERCC4 Nonsense_Mutation p.Q590* 0.31 TCGA-EE-A3J4-06 16 22132418 22132418 C T VWA3A Silent p.L416L 0.35 TCGA-EE-A3J4-06 16 30999184 30999184 C T HSD3B7 Missense_Mutation p.P264S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 16 31371641 31371641 T C ITGAX Missense_Mutation p.F240L 0.38 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A3J4-06 16 67916560 67916560 A G EDC4 Intron 0.38 TCGA-EE-A3J4-06 16 85135862 85135862 G A FAM92B Silent p.A203A 0.36 TCGA-EE-A3J4-06 16 85936730 85936730 C T IRF8 Missense_Mutation p.R37W 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 17 10348633 10348633 G A MYH4 Missense_Mutation p.S1739F 0.44 deleterious(0.02) benign(0.427) TCGA-EE-A3J4-06 17 10428903 10428903 C T MYH2 Missense_Mutation p.E1468K 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3J4-06 17 11790251 11790251 A C DNAH9 Missense_Mutation p.K3694T 0.43 benign(0.045) TCGA-EE-A3J4-06 17 30806301 30806301 T C PSMD11 Silent p.D315D 0.38 TCGA-EE-A3J4-06 17 37224149 37224149 C T PLXDC1 Missense_Mutation p.E483K 0.37 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J4-06 17 37898596 37898596 G A GRB7 Silent p.P37P 0.41 TCGA-EE-A3J4-06 17 38078683 38078683 G A ORMDL3 3'UTR 0.44 TCGA-EE-A3J4-06 17 38906650 38906650 A C KRT25 Missense_Mutation p.L386R 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 17 38922710 38922710 T A KRT26 3'UTR 0.50 TCGA-EE-A3J4-06 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.41 deleterious(0.01) possibly_damaging(0.655) TCGA-EE-A3J4-06 17 40253739 40253739 C T DHX58 3'UTR 0.54 TCGA-EE-A3J4-06 17 43322700 43322700 G A FMNL1 Missense_Mutation p.D937N 0.83 deleterious(0.03) probably_damaging(0.977) TCGA-EE-A3J4-06 17 5462153 5462153 G A NLRP1 Silent p.F621F 0.47 TCGA-EE-A3J4-06 17 60023955 60023955 A T MED13 Silent p.V2133V 0.40 TCGA-EE-A3J4-06 17 65027202 65027202 C T CACNG4 3'UTR 0.45 TCGA-EE-A3J4-06 17 6927948 6927948 G A BCL6B Silent p.G210G 0.43 TCGA-EE-A3J4-06 17 72588529 72588529 A T C17orf77 Missense_Mutation p.K115I 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.844) TCGA-EE-A3J4-06 17 74004309 74004309 G A EVPL Silent p.L1659L 0.38 TCGA-EE-A3J4-06 17 76399761 76399761 T G PGS1 Silent p.L331L 0.40 TCGA-EE-A3J4-06 17 76557814 76557814 C T DNAH17 Silent p.L606L 0.27 TCGA-EE-A3J4-06 17 78820344 78820344 C T RPTOR Silent p.N428N 0.45 TCGA-EE-A3J4-06 17 78820345 78820345 C T RPTOR Missense_Mutation p.P429S 0.45 deleterious(0.01) benign(0.305) TCGA-EE-A3J4-06 17 975870 975870 G A ABR Missense_Mutation p.T293I 0.41 deleterious(0) benign(0.33) TCGA-EE-A3J4-06 18 12452347 12452347 G A SPIRE1 Missense_Mutation p.S640L 0.34 deleterious(0) benign(0.127) TCGA-EE-A3J4-06 18 29784173 29784173 G A MEP1B Missense_Mutation p.V133I 0.12 deleterious(0.04) benign(0.049) TCGA-EE-A3J4-06 18 31325120 31325120 G A ASXL3 Missense_Mutation p.G1770R 0.40 probably_damaging(1) TCGA-EE-A3J4-06 18 40850564 40850564 C T SYT4 Silent p.K340K 0.39 TCGA-EE-A3J4-06 18 65178426 65178426 C T DSEL Silent p.R1150R 0.45 TCGA-EE-A3J4-06 19 1047197 1047197 C T ABCA7 Silent p.F629F 0.31 TCGA-EE-A3J4-06 19 14755005 14755005 A T EMR3 Missense_Mutation p.F322Y 0.47 tolerated(1) benign(0.043) TCGA-EE-A3J4-06 19 14952489 14952489 G A OR7A10 Silent p.S67S 0.33 TCGA-EE-A3J4-06 19 16060701 16060701 G C OR10H4 Missense_Mutation p.R295T 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 19 22157551 22157551 G A ZNF208 Silent p.F95F 0.36 TCGA-EE-A3J4-06 19 22784267 22784267 G A AC011467.1 5'Flank 0.58 TCGA-EE-A3J4-06 19 2338753 2338753 C T SPPL2B Intron 0.46 TCGA-EE-A3J4-06 19 24102841 24102841 G A ZNF726 Silent p.E61E 0.53 TCGA-EE-A3J4-06 19 2878302 2878302 G A ZNF556 Missense_Mutation p.G449E 0.37 tolerated(0.05) benign(0.228) TCGA-EE-A3J4-06 19 34263753 34263753 G A CHST8 Missense_Mutation p.D354N 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 19 35786410 35786410 G A MAG Intron 0.44 TCGA-EE-A3J4-06 19 36223529 36223529 G T KMT2B Nonsense_Mutation p.E2027* 0.96 TCGA-EE-A3J4-06 19 36727835 36727835 T C ZNF146 Missense_Mutation p.F165L 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J4-06 19 39967006 39967006 C T SUPT5H Silent p.N1077N 0.82 TCGA-EE-A3J4-06 19 41736918 41736918 G A AXL Silent p.K211K 0.41 TCGA-EE-A3J4-06 19 42092220 42092220 C T CEACAM21 Missense_Mutation p.S293F 0.94 deleterious_low_confidence(0) benign(0.17) TCGA-EE-A3J4-06 19 42384973 42384973 T A CD79A Missense_Mutation p.S203T 0.43 tolerated(0.14) probably_damaging(0.923) TCGA-EE-A3J4-06 19 42384974 42384974 C T CD79A Missense_Mutation p.S203F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 19 42879809 42879809 C T MEGF8 Missense_Mutation p.R2407C 0.71 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J4-06 19 4513234 4513234 C T PLIN4 Silent p.V232V 0.45 TCGA-EE-A3J4-06 19 47584871 47584871 G A ZC3H4 Missense_Mutation p.P447S 0.84 unknown(0) TCGA-EE-A3J4-06 19 49377548 49377549 - G PPP1R15A Frame_Shift_Ins p.E354Gfs*3 0.39 TCGA-EE-A3J4-06 19 49658119 49658119 C T HRC Missense_Mutation p.E126K 0.39 tolerated(0.05) benign(0.425) TCGA-EE-A3J4-06 19 49967982 49967982 C T ALDH16A1 Missense_Mutation p.P511S 0.86 tolerated(0.11) benign(0.023) TCGA-EE-A3J4-06 19 52825015 52825015 C T ZNF480 Missense_Mutation p.S171F 0.40 tolerated(0.73) benign(0) TCGA-EE-A3J4-06 19 53994394 53994394 A C ZNF813 Missense_Mutation p.E303A 0.43 deleterious(0.03) possibly_damaging(0.501) TCGA-EE-A3J4-06 19 55086319 55086319 A C LILRA2 Silent p.G158G 0.45 TCGA-EE-A3J4-06 19 55255251 55255251 G A KIR2DL3 Missense_Mutation p.E127K 0.91 tolerated(0.99) benign(0.054) TCGA-EE-A3J4-06 19 5687522 5687522 C T HSD11B1L Missense_Mutation p.P171S 0.32 tolerated(0.13) possibly_damaging(0.53) TCGA-EE-A3J4-06 19 57175066 57175066 C T ZNF835 Missense_Mutation p.G501R 0.85 tolerated(0.19) benign(0.205) TCGA-EE-A3J4-06 19 6479890 6479890 G A DENND1C Missense_Mutation p.P36S 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 19 7682957 7682957 G A CAMSAP3 3'UTR 0.32 TCGA-EE-A3J4-06 19 7987660 7987660 G A SNAPC2 3'UTR 0.49 TCGA-EE-A3J4-06 19 9064411 9064411 G A MUC16 Missense_Mutation p.P7679S 0.32 unknown(0) TCGA-EE-A3J4-06 19 9296616 9296616 C T OR7D2 Silent p.S53S 0.38 TCGA-EE-A3J4-06 1 100983956 100983956 T - CDC14A 3'UTR 0.23 TCGA-EE-A3J4-06 1 10689598 10689598 C T PEX14 Missense_Mutation p.P230S 0.34 tolerated(0.09) possibly_damaging(0.851) TCGA-EE-A3J4-06 1 109271303 109271303 G A FNDC7 Missense_Mutation p.M473I 0.35 tolerated(0.27) benign(0.001) TCGA-EE-A3J4-06 1 111494606 111494606 A C LRIF1 Missense_Mutation p.F300L 0.41 tolerated(0.64) benign(0) TCGA-EE-A3J4-06 1 114340551 114340551 G A RSBN1 Missense_Mutation p.L271F 0.39 tolerated_low_confidence(0.09) probably_damaging(0.935) TCGA-EE-A3J4-06 1 114447356 114447356 G A AP4B1 5'UTR 0.36 TCGA-EE-A3J4-06 1 115487076 115487076 G A SYCP1 Silent p.E681E 0.37 TCGA-EE-A3J4-06 1 119469190 119469190 G A TBX15 Missense_Mutation p.P49L 0.46 deleterious(0.01) benign(0.223) TCGA-EE-A3J4-06 1 12853373 12853373 C T PRAMEF1 5'UTR 0.29 TCGA-EE-A3J4-06 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.10 tolerated(0.05) benign(0.028) TCGA-EE-A3J4-06 1 147231317 147231317 G A GJA5 Silent p.F10F 0.33 TCGA-EE-A3J4-06 1 152552340 152552340 T G LCE3D Missense_Mutation p.S25R 0.38 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A3J4-06 1 154296734 154296734 C T AQP10 Intron 0.60 TCGA-EE-A3J4-06 1 155920116 155920116 C T ARHGEF2 Missense_Mutation p.R954H 0.42 tolerated_low_confidence(0.29) benign(0.009) TCGA-EE-A3J4-06 1 156704242 156704242 G A RRNAD1 Missense_Mutation p.G360S 0.36 deleterious(0.02) benign(0.082) TCGA-EE-A3J4-06 1 157556085 157556085 A C FCRL4 Silent p.T336T 0.42 TCGA-EE-A3J4-06 1 157666002 157666002 G T FCRL3 Missense_Mutation p.F320L 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A3J4-06 1 1586835 1586835 G A CDK11B Missense_Mutation p.S72F 0.42 probably_damaging(0.957) TCGA-EE-A3J4-06 1 163044353 163044353 C T RGS4 3'UTR 0.35 TCGA-EE-A3J4-06 1 166974589 166974589 G A MAEL Missense_Mutation p.R267Q 0.47 tolerated(0.3) benign(0.313) TCGA-EE-A3J4-06 1 167343506 167343506 C T POU2F1 Silent p.P188P 0.44 TCGA-EE-A3J4-06 1 169823502 169823502 G A SCYL3 Missense_Mutation p.P693L 0.39 tolerated(0.07) possibly_damaging(0.589) TCGA-EE-A3J4-06 1 176853524 176853524 G A ASTN1 Silent p.L1059L 0.50 TCGA-EE-A3J4-06 1 180056804 180056804 C T CEP350 Missense_Mutation p.S2126F 0.36 probably_damaging(0.954) TCGA-EE-A3J4-06 1 181727126 181727126 G A CACNA1E Missense_Mutation p.R1458H 0.07 deleterious(0.01) possibly_damaging(0.522) TCGA-EE-A3J4-06 1 183191251 183191251 G A LAMC2 Missense_Mutation p.R223Q 0.40 deleterious(0.03) benign(0.284) TCGA-EE-A3J4-06 1 190067660 190067660 C T BRINP3 Missense_Mutation p.E597K 0.40 deleterious(0.03) benign(0.004) TCGA-EE-A3J4-06 1 207651278 207651278 T C CR2 Missense_Mutation p.L984P 0.48 tolerated(0.06) benign(0.211) TCGA-EE-A3J4-06 1 207785063 207785063 C T CR1 Silent p.L2113L 0.38 TCGA-EE-A3J4-06 1 20931527 20931527 C T CDA Silent p.I87I 0.27 TCGA-EE-A3J4-06 1 216062298 216062298 G A USH2A Missense_Mutation p.H2565Y 0.46 possibly_damaging(0.566) TCGA-EE-A3J4-06 1 224804788 224804788 G C CNIH3 5'UTR 0.49 TCGA-EE-A3J4-06 1 225685482 225685482 C A ENAH Missense_Mutation p.A591S 0.13 tolerated_low_confidence(0.38) possibly_damaging(0.784) TCGA-EE-A3J4-06 1 228505387 228505387 G A OBSCN Missense_Mutation p.R5552H 0.38 probably_damaging(0.999) TCGA-EE-A3J4-06 1 237791228 237791228 G A RYR2 Silent p.G2096G 0.40 TCGA-EE-A3J4-06 1 237794808 237794808 C T RYR2 Silent p.V2174V 0.34 TCGA-EE-A3J4-06 1 33478982 33478982 G A AK2 Missense_Mutation p.R174C 0.38 deleterious(0.02) benign(0.019) TCGA-EE-A3J4-06 1 36439064 36439064 C T AGO3 Missense_Mutation p.H204Y 0.39 tolerated(0.9) possibly_damaging(0.777) TCGA-EE-A3J4-06 1 36748266 36748266 C T THRAP3 Silent p.S34S 0.41 TCGA-EE-A3J4-06 1 36748267 36748267 C T THRAP3 Nonsense_Mutation p.R35* 0.43 TCGA-EE-A3J4-06 1 45243706 45243706 G A RPS8 Missense_Mutation p.R141Q 0.26 tolerated(0.26) benign(0.067) TCGA-EE-A3J4-06 1 75038844 75038844 C T C1orf173 Silent p.R850R 0.32 TCGA-EE-A3J4-06 1 91403151 91403151 G A ZNF644 Silent p.I1193I 0.32 TCGA-EE-A3J4-06 20 23731354 23731354 G A CST1 Silent p.F50F 0.40 TCGA-EE-A3J4-06 20 33329386 33329386 G A NCOA6 Silent p.S1558S 0.31 TCGA-EE-A3J4-06 20 39794935 39794935 A G PLCG1 Missense_Mutation p.D634G 0.41 tolerated(0.15) benign(0.004) TCGA-EE-A3J4-06 20 40033543 40033543 A C CHD6 Missense_Mutation p.L2613R 0.53 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 20 43851148 43851148 G A SEMG2 Missense_Mutation p.R292H 0.43 tolerated(0.14) benign(0.011) TCGA-EE-A3J4-06 20 54824095 54824095 A C MC3R Missense_Mutation p.N66H 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 20 57766693 57766693 G A ZNF831 Missense_Mutation p.E207K 0.35 deleterious(0.01) benign(0.427) TCGA-EE-A3J4-06 20 61167928 61167928 G A C20orf166 3'UTR 0.75 TCGA-EE-A3J4-06 20 61588891 61588891 C T SLC17A9 Missense_Mutation p.A119V 0.46 tolerated(1) benign(0.012) TCGA-EE-A3J4-06 20 9523344 9523344 G A PAK7 Silent p.I631I 0.35 TCGA-EE-A3J4-06 20 9543557 9543557 C T PAK7 Missense_Mutation p.D533N 0.36 tolerated(0.1) probably_damaging(0.99) TCGA-EE-A3J4-06 21 11021122 11021122 G A BAGE2 RNA 0.07 TCGA-EE-A3J4-06 21 27394279 27394279 C T APP Missense_Mutation p.D248N 0.25 tolerated(0.12) unknown(0) TCGA-EE-A3J4-06 21 30693778 30693778 C T BACH1 Silent p.F59F 0.35 TCGA-EE-A3J4-06 21 35258649 35258649 G A ITSN1 Silent p.T1634T 0.36 TCGA-EE-A3J4-06 21 45795768 45795768 C T TRPM2 Missense_Mutation p.T275I 0.38 deleterious(0) possibly_damaging(0.824) TCGA-EE-A3J4-06 22 16287415 16287415 C T POTEH Nonsense_Mutation p.W157* 0.16 TCGA-EE-A3J4-06 22 29383157 29383157 G A ZNRF3 Missense_Mutation p.D132N 0.08 deleterious(0.04) possibly_damaging(0.701) TCGA-EE-A3J4-06 22 29726376 29726376 G T AP1B1 Silent p.P919P 0.37 TCGA-EE-A3J4-06 22 37627425 37627425 G A RAC2 Silent p.F98F 0.59 TCGA-EE-A3J4-06 2 10267246 10267246 G A RRM2 Missense_Mutation p.G293S 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.661) TCGA-EE-A3J4-06 2 10267247 10267247 G A RRM2 Missense_Mutation p.G293D 0.40 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-EE-A3J4-06 2 108881710 108881710 G A SULT1C3 Nonsense_Mutation p.W273* 0.37 TCGA-EE-A3J4-06 2 112545836 112545836 A G ANAPC1 Missense_Mutation p.F1592L 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3J4-06 2 150327402 150327402 G A LYPD6 3'UTR 0.44 TCGA-EE-A3J4-06 2 158177966 158177966 C T ERMN Silent p.E237E 0.41 TCGA-EE-A3J4-06 2 158630674 158630674 G A ACVR1 Missense_Mutation p.S190L 0.45 deleterious(0) possibly_damaging(0.687) TCGA-EE-A3J4-06 2 163215621 163215621 C T GCA Silent p.F174F 0.39 TCGA-EE-A3J4-06 2 1653276 1653276 G A PXDN Missense_Mutation p.S759L 0.34 deleterious(0.04) possibly_damaging(0.721) TCGA-EE-A3J4-06 2 166894575 166894575 G A SCN1A Missense_Mutation p.S886F 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 2 168107148 168107148 C G XIRP2 Missense_Mutation p.H3082Q 0.34 benign(0.413) TCGA-EE-A3J4-06 2 179434590 179434590 G A TTN Silent p.F25423F 0.46 TCGA-EE-A3J4-06 2 179434752 179434752 G A TTN Silent p.L25369L 0.43 TCGA-EE-A3J4-06 2 179449181 179449181 C T TTN Silent p.K21699K 0.35 TCGA-EE-A3J4-06 2 185798354 185798354 G A ZNF804A Missense_Mutation p.E94K 0.27 deleterious(0) probably_damaging(0.932) TCGA-EE-A3J4-06 2 187626418 187626418 G A FAM171B Missense_Mutation p.R450K 0.47 tolerated(0.81) benign(0.013) TCGA-EE-A3J4-06 2 18765813 18765813 G A NT5C1B Silent p.Y290Y 0.40 TCGA-EE-A3J4-06 2 197183523 197183523 C T HECW2 Silent p.S697S 0.29 TCGA-EE-A3J4-06 2 201369527 201369527 G A KCTD18 Missense_Mutation p.H106Y 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J4-06 2 216253025 216253025 C T FN1 Splice_Site p.X1418_splice 0.35 TCGA-EE-A3J4-06 2 220342718 220342718 G A SPEG Missense_Mutation p.A1640T 0.42 benign(0.063) TCGA-EE-A3J4-06 2 223065825 223065825 C T PAX3 3'UTR 0.50 TCGA-EE-A3J4-06 2 233899606 233899606 G A NEU2 Missense_Mutation p.A328T 0.44 tolerated(0.22) benign(0.344) TCGA-EE-A3J4-06 2 241991774 241991774 C T SNED1 Missense_Mutation p.P658S 0.35 tolerated(0.16) possibly_damaging(0.616) TCGA-EE-A3J4-06 2 50779988 50779989 TT CTG NRXN1 Frame_Shift_Ins p.K539Qfs*9 0.33 TCGA-EE-A3J4-06 2 54856482 54856482 G A SPTBN1 Silent p.K737K 0.38 TCGA-EE-A3J4-06 2 90139155 90139155 C T IGKV1D-16 Silent p.F17F 0.30 TCGA-EE-A3J4-06 2 90193313 90193313 C T IGKV1D-13 Silent p.V80V 0.27 TCGA-EE-A3J4-06 3 108475982 108475982 C T RETNLB Silent p.L17L 0.53 TCGA-EE-A3J4-06 3 124103861 124103861 C T KALRN Missense_Mutation p.S645F 0.36 tolerated(0.4) unknown(0) TCGA-EE-A3J4-06 3 128204653 128204653 C T GATA2 Missense_Mutation p.G263E 0.57 deleterious(0) benign(0.076) TCGA-EE-A3J4-06 3 133614345 133614345 G A RAB6B 5'UTR 0.40 TCGA-EE-A3J4-06 3 133614346 133614346 G A RAB6B 5'UTR 0.40 TCGA-EE-A3J4-06 3 13860459 13860459 C T WNT7A Silent p.E344E 0.48 TCGA-EE-A3J4-06 3 151155258 151155258 T G IGSF10 Missense_Mutation p.N2364T 0.46 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J4-06 3 166958628 166958628 G A ZBBX Missense_Mutation p.L825F 0.32 deleterious(0.03) possibly_damaging(0.449) TCGA-EE-A3J4-06 3 167249033 167249033 T C WDR49 Silent p.R344R 0.44 TCGA-EE-A3J4-06 3 19975140 19975140 C T EFHB Missense_Mutation p.R124Q 0.49 tolerated_low_confidence(0.05) benign(0.077) TCGA-EE-A3J4-06 3 35748557 35748557 G A ARPP21 Missense_Mutation p.D260N 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 3 38648273 38648273 T C SCN5A Missense_Mutation p.K343E 0.44 deleterious(0) probably_damaging(0.978) TCGA-EE-A3J4-06 3 39374607 39374607 C T CCR8 Missense_Mutation p.S262F 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J4-06 3 42777380 42777380 A C CCDC13 Missense_Mutation p.I397S 0.37 deleterious(0.04) benign(0.052) TCGA-EE-A3J4-06 3 44867637 44867637 C T KIF15 Nonsense_Mutation p.Q886* 0.39 TCGA-EE-A3J4-06 3 46490500 46490500 C T LTF Missense_Mutation p.E356K 0.33 tolerated(0.51) benign(0.004) TCGA-EE-A3J4-06 3 48619788 48619788 C T COL7A1 Missense_Mutation p.E1535K 0.45 unknown(0) TCGA-EE-A3J4-06 3 49397710 49397710 C T RHOA Missense_Mutation p.E172K 0.47 deleterious(0.05) benign(0.251) TCGA-EE-A3J4-06 3 49898227 49898227 C T CAMKV Missense_Mutation p.D233N 0.42 tolerated(0.2) probably_damaging(0.999) TCGA-EE-A3J4-06 3 6903230 6903230 G A GRM7 Missense_Mutation p.G52E 0.62 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 4 102984232 102984232 G A BANK1 Missense_Mutation p.E717K 0.29 tolerated(0.07) benign(0.024) TCGA-EE-A3J4-06 4 115998159 115998159 G A NDST4 Nonsense_Mutation p.R12* 0.22 TCGA-EE-A3J4-06 4 156631873 156631873 G T GUCY1A3 Nonsense_Mutation p.E186* 0.38 TCGA-EE-A3J4-06 4 177605141 177605141 G A VEGFC Missense_Mutation p.S400L 0.44 tolerated(0.29) benign(0.004) TCGA-EE-A3J4-06 4 2661598 2661598 C T FAM193A Missense_Mutation p.P230L 0.44 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J4-06 4 2661599 2661599 C T FAM193A Silent p.P230P 0.45 TCGA-EE-A3J4-06 4 39328223 39328223 T A RFC1 Missense_Mutation p.E201V 0.41 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A3J4-06 4 46307593 46307593 G A GABRA2 Missense_Mutation p.S232F 0.41 tolerated(0.08) benign(0.248) TCGA-EE-A3J4-06 4 57514853 57514853 C T HOPX 3'UTR 0.47 TCGA-EE-A3J4-06 4 68934409 68934409 C T TMPRSS11F Missense_Mutation p.G228R 0.16 deleterious(0) probably_damaging(0.968) TCGA-EE-A3J4-06 4 71503549 71503549 G A ENAM Missense_Mutation p.E193K 0.43 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J4-06 4 8469812 8469812 G A TRMT44 Missense_Mutation p.G556S 0.38 tolerated(0.15) benign(0.032) TCGA-EE-A3J4-06 4 90035698 90035698 C T TIGD2 Missense_Mutation p.H525Y 0.43 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J4-06 4 94750833 94750833 C T ATOH1 Silent p.T252T 0.48 TCGA-EE-A3J4-06 5 101834497 101834497 C T SLCO6A1 Missense_Mutation p.G18R 0.15 tolerated(0.56) benign(0) TCGA-EE-A3J4-06 5 102363938 102363938 T C PAM Silent p.F914F 0.43 TCGA-EE-A3J4-06 5 1034917 1034917 C T NKD2 Missense_Mutation p.S158L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 5 121187989 121187989 T G FTMT Missense_Mutation p.F111V 0.49 tolerated(0.06) probably_damaging(0.952) TCGA-EE-A3J4-06 5 13876855 13876855 C T DNAH5 Missense_Mutation p.E1112K 0.41 benign(0.292) TCGA-EE-A3J4-06 5 13900416 13900416 C T DNAH5 Missense_Mutation p.E720K 0.36 possibly_damaging(0.621) TCGA-EE-A3J4-06 5 140176997 140176997 G A PCDHA2 Intron 0.33 TCGA-EE-A3J4-06 5 140348353 140348353 C T PCDHAC2 Missense_Mutation p.P668S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 5 140481150 140481150 A C PCDHB3 Missense_Mutation p.Y306S 0.43 tolerated_low_confidence(0.54) benign(0) TCGA-EE-A3J4-06 5 140517327 140517327 C T PCDHB5 Missense_Mutation p.P771S 0.33 tolerated_low_confidence(0.09) benign(0.209) TCGA-EE-A3J4-06 5 145883511 145883511 G A TCERG1 Missense_Mutation p.R891K 0.33 tolerated(0.09) unknown(0) TCGA-EE-A3J4-06 5 150945297 150945297 C T FAT2 Missense_Mutation p.E1066K 0.54 possibly_damaging(0.794) TCGA-EE-A3J4-06 5 152873538 152873538 G C GRIA1 Missense_Mutation p.A55P 0.46 deleterious(0.01) benign(0.237) TCGA-EE-A3J4-06 5 169812393 169812393 C T KCNMB1 Missense_Mutation p.G20D 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 5 169812394 169812394 C T KCNMB1 Missense_Mutation p.G20S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 5 170159842 170159842 G A KCNIP1 Missense_Mutation p.M169I 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3J4-06 5 176638258 176638258 C T NSD1 Missense_Mutation p.S953F 0.35 deleterious_low_confidence(0.03) benign(0.265) TCGA-EE-A3J4-06 5 35968190 35968190 G A UGT3A1 Missense_Mutation p.S81L 0.23 tolerated(0.31) benign(0.001) TCGA-EE-A3J4-06 5 38917663 38917663 C T OSMR Missense_Mutation p.P434L 0.55 tolerated(1) benign(0.005) TCGA-EE-A3J4-06 5 41018831 41018831 C T MROH2B Missense_Mutation p.D879N 0.32 tolerated(0.37) benign(0.026) TCGA-EE-A3J4-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.42 TCGA-EE-A3J4-06 5 66458601 66458601 C T MAST4 Missense_Mutation p.P1318S 0.55 probably_damaging(0.918) TCGA-EE-A3J4-06 5 66458602 66458602 C T MAST4 Missense_Mutation p.P1318L 0.56 probably_damaging(0.918) TCGA-EE-A3J4-06 5 75587088 75587088 G A SV2C Missense_Mutation p.E394K 0.46 tolerated(0.07) probably_damaging(0.974) TCGA-EE-A3J4-06 5 9629909 9629909 G A TAS2R1 Missense_Mutation p.S79F 0.40 tolerated(0.4) benign(0.03) TCGA-EE-A3J4-06 6 100056719 100056719 G A PRDM13 Missense_Mutation p.E83K 0.33 deleterious(0.02) benign(0.042) TCGA-EE-A3J4-06 6 119669680 119669680 C T MAN1A1 Missense_Mutation p.S184N 0.49 tolerated(0.23) benign(0.001) TCGA-EE-A3J4-06 6 132891708 132891708 T G TAAR6 Missense_Mutation p.V83G 0.31 deleterious(0) possibly_damaging(0.673) TCGA-EE-A3J4-06 6 160666540 160666540 T C SLC22A2 Missense_Mutation p.N332S 0.47 tolerated(0.8) benign(0.01) TCGA-EE-A3J4-06 6 161027667 161027667 C T LPA Missense_Mutation p.R876K 0.46 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J4-06 6 29454930 29454930 G A MAS1L Silent p.F250F 0.71 TCGA-EE-A3J4-06 6 33283159 33283159 G A ZBTB22 Missense_Mutation p.P512L 0.80 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 6 36492156 36492156 C A STK38 Nonsense_Mutation p.E90* 0.76 TCGA-EE-A3J4-06 6 37250668 37250668 G A TBC1D22B Silent p.R204R 0.76 TCGA-EE-A3J4-06 6 49696531 49696531 T C CRISP3 Missense_Mutation p.K240R 0.75 tolerated(0.43) benign(0.05) TCGA-EE-A3J4-06 6 52009186 52009186 G A MIR206 RNA 0.71 TCGA-EE-A3J4-06 6 6347466 6347466 G A SNAPC5P1 RNA 0.15 TCGA-EE-A3J4-06 7 100454518 100454518 C T SLC12A9 Silent p.V159V 0.48 TCGA-EE-A3J4-06 7 100677071 100677071 G A MUC17 Missense_Mutation p.E792K 0.21 unknown(0) TCGA-EE-A3J4-06 7 100685088 100685088 C T MUC17 Missense_Mutation p.P3464L 0.21 benign(0) TCGA-EE-A3J4-06 7 100799942 100799942 C T AP1S1 Missense_Mutation p.S24L 0.41 tolerated(0.1) benign(0.021) TCGA-EE-A3J4-06 7 114302201 114302201 G A FOXP2 Missense_Mutation p.E602K 0.26 deleterious(0) probably_damaging(0.983) TCGA-EE-A3J4-06 7 120767143 120767143 G A CPED1 Splice_Site p.X379_splice 0.12 TCGA-EE-A3J4-06 7 124404546 124404546 G A GPR37 Missense_Mutation p.S162F 0.44 deleterious(0.04) possibly_damaging(0.564) TCGA-EE-A3J4-06 7 130137800 130137800 G A MEST Silent p.R95R 0.22 TCGA-EE-A3J4-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J4-06 7 141365102 141365102 G A KIAA1147 Silent p.C279C 0.36 TCGA-EE-A3J4-06 7 141619135 141619135 C T OR9A4 Missense_Mutation p.L154F 0.48 tolerated(0.15) benign(0.248) TCGA-EE-A3J4-06 7 141762403 141762403 C T MGAM Silent p.F1386F 0.44 TCGA-EE-A3J4-06 7 141805657 141805657 A C MGAM Missense_Mutation p.N1847T 0.48 tolerated(0.09) benign(0.001) TCGA-EE-A3J4-06 7 143792327 143792327 A T OR2A12 Missense_Mutation p.I43F 0.42 deleterious(0.01) benign(0.006) TCGA-EE-A3J4-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.37 deleterious(0) possibly_damaging(0.466) TCGA-EE-A3J4-06 7 14775813 14775813 C T DGKB Missense_Mutation p.D59N 0.17 tolerated(0.2) benign(0.266) TCGA-EE-A3J4-06 7 148907714 148907714 C T ZNF282 Silent p.S290S 0.29 TCGA-EE-A3J4-06 7 149191587 149191587 G A ZNF746 Missense_Mutation p.P11L 0.41 tolerated(1) benign(0.151) TCGA-EE-A3J4-06 7 149191588 149191588 G A ZNF746 Missense_Mutation p.P11S 0.42 tolerated(0.3) possibly_damaging(0.648) TCGA-EE-A3J4-06 7 150553699 150553699 C T AOC1 Silent p.F47F 0.21 TCGA-EE-A3J4-06 7 1526974 1526974 G A INTS1 Silent p.L876L 0.45 TCGA-EE-A3J4-06 7 34724228 34724228 T C NPSR1 Missense_Mutation p.L71P 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J4-06 7 34724229 34724229 T A NPSR1 Silent p.L71L 0.36 TCGA-EE-A3J4-06 7 42005600 42005600 A C GLI3 Missense_Mutation p.F1024C 0.38 deleterious(0) possibly_damaging(0.873) TCGA-EE-A3J4-06 7 42958977 42958977 G A PSMA2 Intron 0.27 TCGA-EE-A3J4-06 7 44228528 44228528 C T GCK Missense_Mutation p.E9K 0.30 tolerated(0.82) benign(0) TCGA-EE-A3J4-06 7 44736600 44736600 C T OGDH Missense_Mutation p.S663L 0.44 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J4-06 7 45014787 45014787 G A MYO1G Missense_Mutation p.H202Y 0.25 deleterious(0) possibly_damaging(0.567) TCGA-EE-A3J4-06 7 48313343 48313343 T A ABCA13 Missense_Mutation p.D1360E 0.38 benign(0.227) TCGA-EE-A3J4-06 7 4899941 4899941 G A PAPOLB Missense_Mutation p.H500Y 0.22 deleterious(0.03) benign(0.062) TCGA-EE-A3J4-06 7 5568831 5568831 G A ACTB Silent p.A108A 0.57 TCGA-EE-A3J4-06 7 5568832 5568832 G A ACTB Missense_Mutation p.A108V 0.57 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A3J4-06 7 55863756 55863756 C A SEPT14 Missense_Mutation p.M383I 0.58 deleterious(0.02) benign(0) TCGA-EE-A3J4-06 7 63727144 63727144 A T ZNF679 Missense_Mutation p.E378V 0.39 deleterious(0) benign(0.004) TCGA-EE-A3J4-06 7 64466987 64466987 C T ERV3-1 5'UTR 0.28 TCGA-EE-A3J4-06 7 71142214 71142214 A G WBSCR17 Missense_Mutation p.K475E 0.23 tolerated(0.95) benign(0.131) TCGA-EE-A3J4-06 7 7420476 7420476 C T COL28A1 Silent p.R741R 0.22 TCGA-EE-A3J4-06 7 86416220 86416220 G A GRM3 Missense_Mutation p.R371H 0.52 deleterious(0.03) benign(0.005) TCGA-EE-A3J4-06 7 87037492 87037492 G A ABCB4 Missense_Mutation p.A1047V 0.46 deleterious(0) benign(0.01) TCGA-EE-A3J4-06 7 92732556 92732556 C G SAMD9 Missense_Mutation p.G952A 0.38 tolerated(0.25) benign(0.106) TCGA-EE-A3J4-06 8 105105712 105105712 G A RIMS2 Intron 0.58 TCGA-EE-A3J4-06 8 120114597 120114597 G A COLEC10 Silent p.G101G 0.23 TCGA-EE-A3J4-06 8 125061865 125061865 G A FER1L6 Silent p.L914L 0.63 TCGA-EE-A3J4-06 8 125074092 125074092 G C FER1L6 Splice_Site p.X1050_splice 0.40 TCGA-EE-A3J4-06 8 132002665 132002665 G A ADCY8 Missense_Mutation p.R362C 0.68 deleterious(0) possibly_damaging(0.759) TCGA-EE-A3J4-06 8 13357560 13357560 C T DLC1 Silent p.K7K 0.37 TCGA-EE-A3J4-06 8 142504958 142504958 C T MROH5 3'Flank 0.12 TCGA-EE-A3J4-06 8 3263716 3263716 G A CSMD1 Missense_Mutation p.P700L 0.33 probably_damaging(1) TCGA-EE-A3J4-06 8 52323832 52323832 G A PXDNL Silent p.L680L 0.67 TCGA-EE-A3J4-06 8 53025816 53025816 G A ST18 Missense_Mutation p.P1029L 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3J4-06 8 69434034 69434034 G A C8orf34 Missense_Mutation p.E256K 0.23 deleterious(0.04) possibly_damaging(0.82) TCGA-EE-A3J4-06 8 70488373 70488373 C T SULF1 Missense_Mutation p.S114F 0.23 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J4-06 8 70550817 70550817 C T SULF1 Missense_Mutation p.L789F 0.67 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J4-06 8 71060647 71060647 G A NCOA2 Silent p.F822F 0.56 TCGA-EE-A3J4-06 8 72981320 72981320 T G TRPA1 Missense_Mutation p.N128H 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J4-06 8 77766821 77766821 C T ZFHX4 Missense_Mutation p.S2555F 0.37 benign(0.413) TCGA-EE-A3J4-06 8 77766907 77766907 G A ZFHX4 Missense_Mutation p.D2584N 0.12 benign(0.178) TCGA-EE-A3J4-06 8 93017307 93017307 A T RUNX1T1 Intron 0.65 TCGA-EE-A3J4-06 8 93029645 93029645 T C RUNX1T1 Intron 0.26 TCGA-EE-A3J4-06 8 95654216 95654216 G A ESRP1 Silent p.P55P 0.23 TCGA-EE-A3J4-06 9 113208171 113208171 G A SVEP1 Missense_Mutation p.S1470F 0.42 probably_damaging(0.988) TCGA-EE-A3J4-06 9 117838788 117838788 C T TNC Missense_Mutation p.R914K 0.39 tolerated(0.87) benign(0.008) TCGA-EE-A3J4-06 9 123912695 123912695 C A CNTRL Silent p.P1299P 0.41 TCGA-EE-A3J4-06 9 125148925 125148925 G A PTGS1 Missense_Mutation p.E404K 0.42 tolerated(0.79) benign(0.003) TCGA-EE-A3J4-06 9 133963161 133963161 G A LAMC3 Silent p.L1478L 0.40 TCGA-EE-A3J4-06 9 15172087 15172087 G A TTC39B Missense_Mutation p.S660F 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A3J4-06 9 156500 156500 G T CBWD1 Missense_Mutation p.L186I 0.32 tolerated(0.07) benign(0.142) TCGA-EE-A3J4-06 9 32635510 32635510 G A TAF1L Missense_Mutation p.S23L 0.50 deleterious_low_confidence(0) benign(0.118) TCGA-EE-A3J4-06 9 745269 745269 T C KANK1 3'UTR 0.33 TCGA-EE-A3J4-06 9 80336308 80336321 GATATTCTCGGTGT - GNAQ Frame_Shift_Del p.D333Afs*39 0.35 TCGA-EE-A3J4-06 9 84532685 84532685 T C SPATA31D5P RNA 0.09 TCGA-EE-A3J4-06 9 8633430 8633430 G A PTPRD Missense_Mutation p.S80L 0.53 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J4-06 9 93650812 93650812 G A SYK Missense_Mutation p.E580K 0.49 deleterious(0) possibly_damaging(0.714) TCGA-EE-A3J4-06 X 104463705 104463705 A G TEX13A Missense_Mutation p.S391P 0.82 deleterious(0.02) possibly_damaging(0.887) TCGA-EE-A3J4-06 X 104463950 104463950 G A TEX13A Missense_Mutation p.S309F 0.92 tolerated(0.23) possibly_damaging(0.831) TCGA-EE-A3J4-06 X 105137924 105137924 G A NRK Missense_Mutation p.E160K 0.92 deleterious(0) probably_damaging(0.959) TCGA-EE-A3J4-06 X 105179258 105179258 C T NRK Missense_Mutation p.P1200L 0.77 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 X 106117218 106117218 A T TBC1D8B 3'UTR 0.86 TCGA-EE-A3J4-06 X 112021739 112021739 G A AMOT 3'UTR 0.87 TCGA-EE-A3J4-06 X 118726448 118726448 G T NKRF Missense_Mutation p.L20I 0.10 tolerated(0.07) possibly_damaging(0.722) TCGA-EE-A3J4-06 X 135480114 135480114 C T GPR112 Silent p.I2753I 0.76 TCGA-EE-A3J4-06 X 138827914 138827914 A G ATP11C Silent p.L980L 0.71 TCGA-EE-A3J4-06 X 148578029 148578029 G A IDS Missense_Mutation p.P32S 0.86 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J4-06 X 151303157 151303157 C T MAGEA10 Silent p.L312L 0.88 TCGA-EE-A3J4-06 X 155004063 155004063 C T SPRY3 Missense_Mutation p.S177F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J4-06 X 24734548 24734548 C T POLA1 Missense_Mutation p.P193S 0.82 tolerated(0.26) possibly_damaging(0.542) TCGA-EE-A3J4-06 X 57358231 57358231 G T FAAH2 Nonsense_Mutation p.G205* 0.80 TCGA-EE-A3J4-06 X 57358232 57358232 G T FAAH2 Missense_Mutation p.G205V 0.80 deleterious(0) probably_damaging(0.986) TCGA-EE-A3J4-06 X 73964130 73964130 C T KIAA2022 Missense_Mutation p.E88K 0.85 tolerated_low_confidence(0.07) possibly_damaging(0.522) TCGA-EE-A3J4-06 X 9900594 9900594 G A SHROOM2 Missense_Mutation p.G1091S 0.38 tolerated(1) benign(0) TCGA-EE-A3J5-06 10 101486849 101486849 C T COX15 Missense_Mutation p.R153Q 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 101646249 101646249 C T DNMBP Silent p.K1142K 0.35 TCGA-EE-A3J5-06 10 101911949 101911949 G A ERLIN1 Missense_Mutation p.S329F 0.38 deleterious_low_confidence(0.02) benign(0.054) TCGA-EE-A3J5-06 10 102738164 102738164 C T MRPL43 3'Flank 0.29 TCGA-EE-A3J5-06 10 102743575 102743575 C T MRPL43 Splice_Site p.X198_splice 0.47 TCGA-EE-A3J5-06 10 104140992 104140992 C T GBF1 Missense_Mutation p.P1760L 0.23 deleterious_low_confidence(0) benign(0.31) TCGA-EE-A3J5-06 10 105807933 105807933 C T COL17A1 Intron 0.32 TCGA-EE-A3J5-06 10 111872537 111872537 C T ADD3 Silent p.A66A 0.34 TCGA-EE-A3J5-06 10 112655733 112655733 C T PDCD4 Missense_Mutation p.P413S 0.38 tolerated(0.21) benign(0.067) TCGA-EE-A3J5-06 10 116046165 116046165 G A VWA2 Missense_Mutation p.E489K 0.33 tolerated(0.28) benign(0.02) TCGA-EE-A3J5-06 10 117075215 117075215 G A ATRNL1 Silent p.K1002K 0.37 TCGA-EE-A3J5-06 10 118969796 118969796 C T KCNK18 Missense_Mutation p.L381F 0.39 tolerated_low_confidence(0.72) benign(0.003) TCGA-EE-A3J5-06 10 119043865 119043865 G T PDZD8 Missense_Mutation p.F793L 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3J5-06 10 119044584 119044584 G A PDZD8 Missense_Mutation p.P554S 0.17 tolerated_low_confidence(0.74) benign(0.005) TCGA-EE-A3J5-06 10 11984744 11984744 C T UPF2 Missense_Mutation p.G1100S 0.30 tolerated(0.36) probably_damaging(0.997) TCGA-EE-A3J5-06 10 123844580 123844580 G A TACC2 Silent p.G855G 0.31 TCGA-EE-A3J5-06 10 123970781 123970781 G A TACC2 Missense_Mutation p.E2281K 0.20 possibly_damaging(0.765) TCGA-EE-A3J5-06 10 124096120 124096120 G A BTBD16 Missense_Mutation p.D459N 0.37 tolerated(0.47) benign(0.065) TCGA-EE-A3J5-06 10 124361461 124361461 C T DMBT1 Silent p.G1164G 0.25 TCGA-EE-A3J5-06 10 124380671 124380671 G A DMBT1 Missense_Mutation p.D1666N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 10 124459191 124459191 G A C10orf120 Missense_Mutation p.S39F 0.32 tolerated(0.11) probably_damaging(0.938) TCGA-EE-A3J5-06 10 126090297 126090297 C T OAT Missense_Mutation p.E338K 0.25 tolerated(0.25) benign(0.114) TCGA-EE-A3J5-06 10 126505149 126505149 C T FAM175B Silent p.I56I 0.33 TCGA-EE-A3J5-06 10 127555595 127555595 G A DHX32 Missense_Mutation p.P147L 0.26 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3J5-06 10 127569209 127569209 A G DHX32 Missense_Mutation p.L62P 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 10 129910062 129910062 G T MKI67 Missense_Mutation p.H703N 0.31 tolerated(0.07) possibly_damaging(0.867) TCGA-EE-A3J5-06 10 129910434 129910434 G A MKI67 Silent p.S644S 0.40 TCGA-EE-A3J5-06 10 131640505 131640505 G A EBF3 Missense_Mutation p.P407L 0.26 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-EE-A3J5-06 10 135012301 135012301 C T KNDC1 Silent p.P763P 0.20 TCGA-EE-A3J5-06 10 135345690 135345690 C T CYP2E1 Missense_Mutation p.L184F 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 135350649 135350649 G A CYP2E1 Missense_Mutation p.M350I 0.32 deleterious(0.02) benign(0.098) TCGA-EE-A3J5-06 10 13541953 13541953 C T BEND7 Silent p.L39L 0.31 TCGA-EE-A3J5-06 10 15858885 15858885 G A FAM188A Silent p.F277F 0.33 TCGA-EE-A3J5-06 10 21108397 21108397 G A NEBL Missense_Mutation p.P671S 0.22 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J5-06 10 21158759 21158759 C T NEBL Silent p.R164R 0.34 TCGA-EE-A3J5-06 10 25885597 25885597 G A GPR158 Missense_Mutation p.R675Q 0.29 deleterious(0.03) possibly_damaging(0.579) TCGA-EE-A3J5-06 10 26432466 26432466 G A MYO3A Missense_Mutation p.M784I 0.20 deleterious(0.03) benign(0.173) TCGA-EE-A3J5-06 10 26432467 26432467 G A MYO3A Missense_Mutation p.G785S 0.19 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 10 26500902 26500902 G A MYO3A 3'UTR 0.44 TCGA-EE-A3J5-06 10 28196681 28196681 G A ARMC4 Missense_Mutation p.R841C 0.28 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A3J5-06 10 28225794 28225794 C T ARMC4 Missense_Mutation p.E705K 0.40 tolerated(0.05) possibly_damaging(0.824) TCGA-EE-A3J5-06 10 29812539 29812539 C T SVIL Missense_Mutation p.E1002K 0.30 deleterious_low_confidence(0) benign(0.407) TCGA-EE-A3J5-06 10 30317446 30317446 G A KIAA1462 Missense_Mutation p.P544L 0.26 tolerated(0.16) benign(0.052) TCGA-EE-A3J5-06 10 30318071 30318071 C T KIAA1462 Missense_Mutation p.E336K 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 31138047 31138047 G A ZNF438 Silent p.T429T 0.33 TCGA-EE-A3J5-06 10 32120668 32120668 G A ARHGAP12 Nonsense_Mutation p.R483* 0.21 TCGA-EE-A3J5-06 10 35858103 35858103 G A CCNY 3'UTR 0.40 TCGA-EE-A3J5-06 10 35858104 35858104 G A CCNY 3'UTR 0.40 TCGA-EE-A3J5-06 10 37422911 37422911 G T ANKRD30A Missense_Mutation p.V173F 0.36 deleterious(0) probably_damaging(0.942) TCGA-EE-A3J5-06 10 37436352 37436352 C T ANKRD30A Nonsense_Mutation p.Q448* 0.25 TCGA-EE-A3J5-06 10 37490162 37490162 G A ANKRD30A Splice_Site p.X871_splice 0.36 TCGA-EE-A3J5-06 10 38343452 38343452 C T ZNF33A Missense_Mutation p.P134S 0.18 tolerated(0.71) benign(0.133) TCGA-EE-A3J5-06 10 38345511 38345511 T C ZNF33A 3'UTR 0.34 TCGA-EE-A3J5-06 10 44868783 44868783 T C CXCL12 3'Flank 0.37 TCGA-EE-A3J5-06 10 45486393 45486393 C T RASSF4 Intron 0.37 TCGA-EE-A3J5-06 10 45799912 45799912 G A OR13A1 Intron 0.26 TCGA-EE-A3J5-06 10 48390902 48390902 C T RBP3 5'UTR 0.19 TCGA-EE-A3J5-06 10 48416454 48416454 T A GDF2 Missense_Mutation p.K80N 0.37 tolerated(0.19) benign(0.047) TCGA-EE-A3J5-06 10 49447730 49447730 C T FRMPD2 Missense_Mutation p.E236K 0.12 tolerated(0.18) benign(0.2) TCGA-EE-A3J5-06 10 49459624 49459624 C T FRMPD2 Missense_Mutation p.E46K 0.23 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A3J5-06 10 49654499 49654499 C T ARHGAP22 Missense_Mutation p.E694K 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-EE-A3J5-06 10 49658916 49658916 C T ARHGAP22 Missense_Mutation p.G435E 0.28 tolerated(0.15) benign(0.373) TCGA-EE-A3J5-06 10 49663144 49663144 C T ARHGAP22 Silent p.L247L 0.19 TCGA-EE-A3J5-06 10 50121724 50121724 G A LRRC18 Silent p.I159I 0.21 TCGA-EE-A3J5-06 10 50122172 50122172 C T LRRC18 Missense_Mutation p.G10D 0.40 deleterious(0.02) probably_damaging(0.946) TCGA-EE-A3J5-06 10 50691550 50691550 G A ERCC6 Nonsense_Mutation p.R612* 0.36 TCGA-EE-A3J5-06 10 50723688 50723688 G A ERCC6-PGBD3 Silent p.F959F 0.36 TCGA-EE-A3J5-06 10 51225477 51225477 G A AGAP8 Missense_Mutation p.P502L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 5136565 5136565 C T AKR1C3 5'UTR 0.40 TCGA-EE-A3J5-06 10 51465024 51465024 C T AGAP7 Missense_Mutation p.E478K 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-EE-A3J5-06 10 52103403 52103403 C T SGMS1 Missense_Mutation p.E158K 0.42 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 10 52619641 52619641 G A A1CF 5'UTR 0.21 TCGA-EE-A3J5-06 10 5541147 5541147 G A CALML5 Silent p.V85V 0.28 TCGA-EE-A3J5-06 10 55568568 55568568 C T PCDH15 Missense_Mutation p.E682K 0.44 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J5-06 10 55582442 55582442 C T PCDH15 Missense_Mutation p.E1684K 0.27 tolerated_low_confidence(0.06) benign(0.006) TCGA-EE-A3J5-06 10 5567446 5567446 G A CALML3 Missense_Mutation p.G133E 0.33 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-EE-A3J5-06 10 55849824 55849824 C T PCDH15 Splice_Site p.X640_splice 0.14 TCGA-EE-A3J5-06 10 55912973 55912973 G A PCDH15 Silent p.I557I 0.37 TCGA-EE-A3J5-06 10 5995030 5995030 G A IL15RA 3'UTR 0.47 TCGA-EE-A3J5-06 10 60559994 60559994 T C BICC1 Missense_Mutation p.L589P 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-EE-A3J5-06 10 6060045 6060045 G A IL2RA Silent p.L255L 0.12 TCGA-EE-A3J5-06 10 61412481 61412481 C T SLC16A9 3'UTR 0.31 TCGA-EE-A3J5-06 10 64968324 64968324 A G JMJD1C Silent p.F1035F 0.37 TCGA-EE-A3J5-06 10 69881595 69881595 G A MYPN Missense_Mutation p.E134K 0.18 tolerated(0.56) benign(0.05) TCGA-EE-A3J5-06 10 70136737 70136737 A C RUFY2 Intron 0.42 TCGA-EE-A3J5-06 10 70954989 70954989 C T SUPV3L1 Missense_Mutation p.A300V 0.18 tolerated(0.27) benign(0.066) TCGA-EE-A3J5-06 10 70954990 70954990 C T SUPV3L1 Silent p.A300A 0.19 TCGA-EE-A3J5-06 10 71017139 71017139 C A HKDC1 Silent p.T663T 0.27 TCGA-EE-A3J5-06 10 71718471 71718471 G A COL13A1 3'UTR 0.29 TCGA-EE-A3J5-06 10 72358285 72358285 G T PRF1 Missense_Mutation p.H398N 0.29 tolerated(0.31) benign(0.065) TCGA-EE-A3J5-06 10 72358286 72358286 G A PRF1 Silent p.C397C 0.27 TCGA-EE-A3J5-06 10 72358287 72358287 C G PRF1 Missense_Mutation p.C397S 0.29 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J5-06 10 73326541 73326541 G A CDH23 Missense_Mutation p.D158N 0.32 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 10 73447424 73447424 C T CDH23 Silent p.P261P 0.24 TCGA-EE-A3J5-06 10 73511027 73511027 T C C10orf54 Missense_Mutation p.N307D 0.20 tolerated(0.27) benign(0.005) TCGA-EE-A3J5-06 10 73765586 73765586 G A CHST3 5'UTR 0.30 TCGA-EE-A3J5-06 10 74628610 74628610 C T MCU Missense_Mutation p.P216S 0.23 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 10 75005793 75005793 C T DNAJC9 Missense_Mutation p.E155K 0.38 deleterious(0.01) benign(0.071) TCGA-EE-A3J5-06 10 75082833 75082833 G A TTC18 Missense_Mutation p.S337L 0.41 deleterious(0.04) possibly_damaging(0.815) TCGA-EE-A3J5-06 10 75896460 75896460 G A AP3M1 Silent p.T125T 0.23 TCGA-EE-A3J5-06 10 76857613 76857613 C T DUSP13 Silent p.R60R 0.38 TCGA-EE-A3J5-06 10 76935996 76935996 C T SAMD8 Intron 0.26 TCGA-EE-A3J5-06 10 78647063 78647063 G T KCNMA1 Silent p.S1207S 0.31 TCGA-EE-A3J5-06 10 79595668 79595668 C T DLG5 Missense_Mutation p.V484M 0.33 deleterious(0.04) benign(0.019) TCGA-EE-A3J5-06 10 8006910 8006910 G T TAF3 Silent p.L479L 0.38 TCGA-EE-A3J5-06 10 81701764 81701764 C T SFTPD Missense_Mutation p.G166R 0.31 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J5-06 10 82049104 82049104 C T MAT1A Missense_Mutation p.G26R 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 85962834 85962834 C T CDHR1 Silent p.F246F 0.33 TCGA-EE-A3J5-06 10 88730307 88730307 G T ADIRF Missense_Mutation p.G67W 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 10 88730308 88730308 G A ADIRF Missense_Mutation p.G67E 0.25 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 10 88917887 88917887 T C FAM35A Silent p.S536S 0.29 TCGA-EE-A3J5-06 10 90492292 90492292 C T LIPK Missense_Mutation p.S218F 0.31 deleterious(0.04) benign(0.051) TCGA-EE-A3J5-06 10 91144316 91144316 G A IFIT1B Missense_Mutation p.E416K 0.27 tolerated(0.43) benign(0.002) TCGA-EE-A3J5-06 10 94220954 94220954 G A IDE Silent p.F939F 0.28 TCGA-EE-A3J5-06 10 95791255 95791255 G A PLCE1 Missense_Mutation p.G151E 0.36 tolerated_low_confidence(0.42) benign(0.015) TCGA-EE-A3J5-06 10 96535262 96535262 C T CYP2C19 Silent p.A149A 0.31 TCGA-EE-A3J5-06 10 96805651 96805651 C T CYP2C8 Missense_Mutation p.D293N 0.31 tolerated(0.23) possibly_damaging(0.475) TCGA-EE-A3J5-06 10 96971740 96971740 C T C10orf129 Silent p.A287A 0.19 TCGA-EE-A3J5-06 10 97916530 97916530 C T ZNF518A RNA 0.25 TCGA-EE-A3J5-06 10 98155086 98155086 G A TLL2 Silent p.P528P 0.29 TCGA-EE-A3J5-06 11 102198822 102198822 C T BIRC3 Silent p.I331I 0.21 TCGA-EE-A3J5-06 11 102465482 102465482 G A MMP20 Silent p.F320F 0.32 TCGA-EE-A3J5-06 11 102641513 102641513 C T MMP10 3'UTR 0.25 TCGA-EE-A3J5-06 11 102641514 102641514 C T MMP10 3'UTR 0.25 TCGA-EE-A3J5-06 11 102826187 102826187 G A MMP13 Silent p.L52L 0.34 TCGA-EE-A3J5-06 11 103124109 103124109 C T DYNC2H1 Missense_Mutation p.P3387S 0.32 possibly_damaging(0.749) TCGA-EE-A3J5-06 11 103128387 103128387 C T DYNC2H1 Silent p.F3511F 0.13 TCGA-EE-A3J5-06 11 103907512 103907512 C T DDI1 5'UTR 0.24 TCGA-EE-A3J5-06 11 104777798 104777798 C T RP11-693N9.2 RNA 0.64 TCGA-EE-A3J5-06 11 10518398 10518398 G A AMPD3 Silent p.G499G 0.32 TCGA-EE-A3J5-06 11 10615147 10615147 C T MRVI1 Splice_Site p.X690_splice 0.32 TCGA-EE-A3J5-06 11 106849459 106849459 C T GUCY1A2 Missense_Mutation p.D125N 0.26 tolerated(0.06) benign(0.021) TCGA-EE-A3J5-06 11 108384070 108384070 T C EXPH5 Missense_Mutation p.K722E 0.23 tolerated(0.5) benign(0.1) TCGA-EE-A3J5-06 11 108384777 108384777 C T EXPH5 Missense_Mutation p.G486E 0.27 tolerated(1) benign(0) TCGA-EE-A3J5-06 11 110035850 110035850 C T ZC3H12C Silent p.F680F 0.23 TCGA-EE-A3J5-06 11 110035986 110035986 C T ZC3H12C Missense_Mutation p.P726S 0.29 tolerated(0.06) benign(0.031) TCGA-EE-A3J5-06 11 110035987 110035987 C T ZC3H12C Missense_Mutation p.P726L 0.28 deleterious(0) benign(0.423) TCGA-EE-A3J5-06 11 110451632 110451632 T A ARHGAP20 Missense_Mutation p.M680L 0.30 tolerated(0.54) benign(0) TCGA-EE-A3J5-06 11 110451633 110451633 G A ARHGAP20 Silent p.A679A 0.31 TCGA-EE-A3J5-06 11 111228391 111228391 C T POU2AF1 Missense_Mutation p.E79K 0.25 deleterious(0.04) probably_damaging(0.944) TCGA-EE-A3J5-06 11 111368763 111368763 C T BTG4 Missense_Mutation p.E91K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 11 111571730 111571730 T C SIK2 Missense_Mutation p.I200T 0.35 deleterious(0.02) possibly_damaging(0.453) TCGA-EE-A3J5-06 11 113607479 113607479 G A ZW10 Silent p.P694P 0.24 TCGA-EE-A3J5-06 11 11400639 11400639 G A GALNT18 Silent p.F256F 0.27 TCGA-EE-A3J5-06 11 11400809 11400809 C T GALNT18 Missense_Mutation p.E200K 0.24 deleterious(0) possibly_damaging(0.766) TCGA-EE-A3J5-06 11 117304180 117304180 C T DSCAML1 Silent p.K1688K 0.09 TCGA-EE-A3J5-06 11 117352743 117352743 C T DSCAML1 Missense_Mutation p.D892N 0.19 deleterious(0.04) possibly_damaging(0.535) TCGA-EE-A3J5-06 11 117695396 117695396 C T FXYD2 5'UTR 0.27 TCGA-EE-A3J5-06 11 117784497 117784497 G A TMPRSS13 Silent p.F268F 0.27 TCGA-EE-A3J5-06 11 118373290 118373290 C T KMT2A Missense_Mutation p.S2228F 0.47 possibly_damaging(0.851) TCGA-EE-A3J5-06 11 118498462 118498462 C T PHLDB1 Missense_Mutation p.S308F 0.26 deleterious(0.01) benign(0.004) TCGA-EE-A3J5-06 11 118769512 118769512 G A BCL9L Missense_Mutation p.P1371L 0.33 probably_damaging(0.96) TCGA-EE-A3J5-06 11 118925984 118925984 G C HYOU1 Missense_Mutation p.P111R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J5-06 11 119170602 119170602 C T CBL 3'UTR 0.45 TCGA-EE-A3J5-06 11 120348212 120348212 C T ARHGEF12 Missense_Mutation p.S1170L 0.30 deleterious_low_confidence(0.04) benign(0.071) TCGA-EE-A3J5-06 11 120924358 120924358 C T TBCEL Silent p.S124S 0.32 TCGA-EE-A3J5-06 11 121000613 121000613 G A TECTA Nonsense_Mutation p.W878* 0.20 TCGA-EE-A3J5-06 11 121428058 121428058 C T SORL1 Silent p.I869I 0.22 TCGA-EE-A3J5-06 11 122646962 122646962 T C UBASH3B Missense_Mutation p.V66A 0.22 tolerated(0.41) possibly_damaging(0.454) TCGA-EE-A3J5-06 11 123814182 123814182 G A OR6T1 Missense_Mutation p.R122C 0.31 deleterious(0.01) possibly_damaging(0.637) TCGA-EE-A3J5-06 11 123814471 123814471 G A OR6T1 Silent p.F25F 0.12 TCGA-EE-A3J5-06 11 123886691 123886691 G A OR10G4 Missense_Mutation p.G137E 0.09 tolerated(0.27) benign(0.033) TCGA-EE-A3J5-06 11 123894080 123894080 C T OR10G9 Missense_Mutation p.R121C 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-EE-A3J5-06 11 123894129 123894129 G A OR10G9 Missense_Mutation p.G137E 0.29 tolerated(0.3) benign(0.033) TCGA-EE-A3J5-06 11 123894208 123894208 C T OR10G9 Silent p.F163F 0.30 TCGA-EE-A3J5-06 11 123894476 123894476 C T OR10G9 Missense_Mutation p.P253S 0.25 deleterious(0.01) possibly_damaging(0.571) TCGA-EE-A3J5-06 11 124967576 124967576 G A TMEM218 Missense_Mutation p.L92F 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J5-06 11 124967577 124967577 G A TMEM218 Silent p.F91F 0.33 TCGA-EE-A3J5-06 11 125478120 125478120 C T STT3A Silent p.F299F 0.39 TCGA-EE-A3J5-06 11 126080839 126080839 G A RPUSD4 Missense_Mutation p.H101Y 0.30 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 11 126081383 126081383 G A RPUSD4 Nonsense_Mutation p.R51* 0.27 TCGA-EE-A3J5-06 11 126081384 126081384 G A RPUSD4 Silent p.L50L 0.26 TCGA-EE-A3J5-06 11 1261118 1261118 G A MUC5B Missense_Mutation p.G1225R 0.10 unknown(0) TCGA-EE-A3J5-06 11 126299111 126299111 C T KIRREL3 Missense_Mutation p.R590Q 0.26 tolerated(0.06) probably_damaging(0.99) TCGA-EE-A3J5-06 11 126306834 126306834 G A KIRREL3 Missense_Mutation p.T475I 0.33 deleterious(0.01) benign(0.187) TCGA-EE-A3J5-06 11 1265345 1265345 G A MUC5B Missense_Mutation p.G2412D 0.23 unknown(0) TCGA-EE-A3J5-06 11 1269775 1269775 G A MUC5B Missense_Mutation p.V3889M 0.39 unknown(0) TCGA-EE-A3J5-06 11 128844600 128844600 G A ARHGAP32 Missense_Mutation p.S817F 0.20 deleterious(0.02) benign(0.011) TCGA-EE-A3J5-06 11 129306903 129306903 G A BARX2 Missense_Mutation p.E149K 0.38 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J5-06 11 130131663 130131663 G A ZBTB44 Missense_Mutation p.R36C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J5-06 11 130289092 130289092 G A ADAMTS8 Silent p.I272I 0.26 TCGA-EE-A3J5-06 11 130785374 130785374 A G SNX19 Missense_Mutation p.V154A 0.39 deleterious(0) benign(0.232) TCGA-EE-A3J5-06 11 133790737 133790737 G A IGSF9B Silent p.F961F 0.19 TCGA-EE-A3J5-06 11 134253728 134253728 C T B3GAT1 Missense_Mutation p.G156E 0.62 tolerated(1) possibly_damaging(0.659) TCGA-EE-A3J5-06 11 13435174 13435174 G A BTBD10 Silent p.I237I 0.23 TCGA-EE-A3J5-06 11 13732391 13732391 G A FAR1 Missense_Mutation p.G233S 0.42 tolerated(0.43) benign(0.069) TCGA-EE-A3J5-06 11 14101567 14101567 C T SPON1 Intron 0.24 TCGA-EE-A3J5-06 11 15267541 15267541 G A INSC Silent p.V565V 0.27 TCGA-EE-A3J5-06 11 15267542 15267542 G A INSC Missense_Mutation p.D566N 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 11 16838404 16838404 C T PLEKHA7 Silent p.R603R 0.26 TCGA-EE-A3J5-06 11 17464396 17464396 C T ABCC8 Missense_Mutation p.E501K 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 11 17496474 17496474 G A ABCC8 Silent p.F83F 0.32 TCGA-EE-A3J5-06 11 1776238 1776238 C T RP11-295K3.1 Missense_Mutation p.G113E 0.30 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J5-06 11 18195525 18195525 G A MRGPRX4 Missense_Mutation p.R241K 0.32 deleterious(0.04) benign(0.012) TCGA-EE-A3J5-06 11 18231962 18231962 G A RP11-113D6.10 3'UTR 0.23 TCGA-EE-A3J5-06 11 1858082 1858082 G A SYT8 Missense_Mutation p.G275R 0.34 deleterious(0) probably_damaging(0.938) TCGA-EE-A3J5-06 11 18729410 18729410 C T IGSF22 Missense_Mutation p.R1074Q 0.20 tolerated(0.56) benign(0.016) TCGA-EE-A3J5-06 11 18739511 18739511 C T IGSF22 Missense_Mutation p.D314N 0.28 tolerated(0.14) benign(0.038) TCGA-EE-A3J5-06 11 19251088 19251088 T C E2F8 Silent p.R602R 0.38 TCGA-EE-A3J5-06 11 198237 198237 G A ODF3 Missense_Mutation p.D117N 0.29 tolerated(0.5) benign(0.007) TCGA-EE-A3J5-06 11 20178090 20178090 C T DBX1 Missense_Mutation p.M273I 0.38 deleterious(0) probably_damaging(0.924) TCGA-EE-A3J5-06 11 20625925 20625925 G A SLC6A5 Missense_Mutation p.G212S 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 11 20805234 20805234 A T NELL1 Nonsense_Mutation p.R65* 0.30 TCGA-EE-A3J5-06 11 2185486 2185486 G A TH Missense_Mutation p.H522Y 0.31 tolerated(0.25) benign(0.236) TCGA-EE-A3J5-06 11 22249119 22249119 C T ANO5 Missense_Mutation p.S212L 0.21 deleterious(0.01) benign(0.017) TCGA-EE-A3J5-06 11 26655809 26655809 C T ANO3 Silent p.F644F 0.14 TCGA-EE-A3J5-06 11 292007 292007 T A ATHL1 Missense_Mutation p.F313Y 0.32 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A3J5-06 11 292008 292008 C T ATHL1 Silent p.F313F 0.32 TCGA-EE-A3J5-06 11 31128377 31128377 T G DCDC1 Missense_Mutation p.Q573P 0.27 deleterious(0) probably_damaging(0.917) TCGA-EE-A3J5-06 11 31312208 31312208 C A DCDC1 Nonsense_Mutation p.E316* 0.34 TCGA-EE-A3J5-06 11 31312210 31312210 T A DCDC1 Missense_Mutation p.K315I 0.29 deleterious(0.05) possibly_damaging(0.758) TCGA-EE-A3J5-06 11 3141658 3141658 G A OSBPL5 Missense_Mutation p.A200V 0.56 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3J5-06 11 32632691 32632691 A G CCDC73 Missense_Mutation p.F1006S 0.38 deleterious(0) probably_damaging(0.985) TCGA-EE-A3J5-06 11 34113512 34113512 A G CAPRIN1 Silent p.Q538Q 0.28 TCGA-EE-A3J5-06 11 35827967 35827967 C T TRIM44 3'UTR 0.24 TCGA-EE-A3J5-06 11 3681198 3681198 C T ART1 Missense_Mutation p.S150F 0.22 deleterious(0.03) possibly_damaging(0.793) TCGA-EE-A3J5-06 11 4510780 4510780 T C OR52K1 Missense_Mutation p.I217T 0.30 tolerated(0.5) benign(0.012) TCGA-EE-A3J5-06 11 45246215 45246215 C T PRDM11 Missense_Mutation p.S397F 0.26 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A3J5-06 11 4566853 4566853 C T OR52M1 Missense_Mutation p.R145C 0.21 deleterious(0.01) benign(0.009) TCGA-EE-A3J5-06 11 45671138 45671138 G A CHST1 3'UTR 0.49 TCGA-EE-A3J5-06 11 45671859 45671859 G A CHST1 Silent p.I205I 0.44 TCGA-EE-A3J5-06 11 45868996 45868996 C T CRY2 Silent p.V6V 0.32 TCGA-EE-A3J5-06 11 45868998 45868998 C T CRY2 Missense_Mutation p.A7V 0.33 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J5-06 11 45950285 45950285 C T GYLTL1B Silent p.C685C 0.18 TCGA-EE-A3J5-06 11 45950286 45950286 C T GYLTL1B Missense_Mutation p.L686F 0.19 deleterious(0) possibly_damaging(0.896) TCGA-EE-A3J5-06 11 4616188 4616188 G A OR52I1 Missense_Mutation p.G307E 0.25 tolerated(0.09) benign(0.027) TCGA-EE-A3J5-06 11 46430162 46430162 G A AMBRA1 Nonsense_Mutation p.Q1012* 0.46 TCGA-EE-A3J5-06 11 47303127 47303127 C T MADD Missense_Mutation p.A431V 0.25 tolerated(0.07) probably_damaging(0.987) TCGA-EE-A3J5-06 11 47353722 47353722 C T MYBPC3 Missense_Mutation p.E1239K 0.28 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J5-06 11 47397211 47397211 G T SPI1 Missense_Mutation p.L40I 0.21 tolerated(0.18) benign(0.035) TCGA-EE-A3J5-06 11 47741550 47741550 G A FNBP4 Missense_Mutation p.S965F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 11 47767640 47767640 G A FNBP4 Missense_Mutation p.L405F 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3J5-06 11 47767641 47767641 G A FNBP4 Silent p.T404T 0.27 TCGA-EE-A3J5-06 11 48152026 48152026 C T PTPRJ Missense_Mutation p.S458F 0.30 tolerated(0.69) benign(0.249) TCGA-EE-A3J5-06 11 48328206 48328206 G A OR4S1 Silent p.G144G 0.15 TCGA-EE-A3J5-06 11 4870102 4870102 G A OR51S1 Missense_Mutation p.H113Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 11 489449 489449 C T PTDSS2 Missense_Mutation p.R302C 0.36 deleterious(0.03) possibly_damaging(0.901) TCGA-EE-A3J5-06 11 4929415 4929415 G A OR51A7 Silent p.V272V 0.33 TCGA-EE-A3J5-06 11 49598123 49598123 G A RP11-707M1.1 RNA 0.21 TCGA-EE-A3J5-06 11 49831487 49831487 G A RP11-707M1.1 RNA 0.20 TCGA-EE-A3J5-06 11 5011056 5011056 C T MMP26 Missense_Mutation p.S93L 0.33 tolerated(0.23) benign(0.001) TCGA-EE-A3J5-06 11 5020830 5020830 T C OR51L1 Silent p.I206I 0.16 TCGA-EE-A3J5-06 11 51411636 51411636 T A OR4A5 Missense_Mutation p.I254L 0.13 tolerated_low_confidence(0.41) benign(0.009) TCGA-EE-A3J5-06 11 51515952 51515952 G A OR4C46 Missense_Mutation p.R224K 0.22 tolerated_low_confidence(0.68) benign(0.009) TCGA-EE-A3J5-06 11 5172726 5172726 G A OR52A1 Missense_Mutation p.P292S 0.22 deleterious(0) possibly_damaging(0.696) TCGA-EE-A3J5-06 11 5221254 5221254 G A OR51V1 Missense_Mutation p.S226F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 11 5248189 5248189 C T HBB Silent p.V21V 0.25 TCGA-EE-A3J5-06 11 5290895 5290895 A T HBE1 Missense_Mutation p.V35D 0.46 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.28 tolerated_low_confidence(0.06) benign(0.19) TCGA-EE-A3J5-06 11 5529468 5529468 A G UBQLN3 Silent p.L441L 0.35 TCGA-EE-A3J5-06 11 55540930 55540930 G A OR5D13 Missense_Mutation p.R6K 0.29 tolerated(0.64) benign(0.001) TCGA-EE-A3J5-06 11 55563600 55563600 C T OR5D14 Missense_Mutation p.S190F 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 11 55579402 55579402 G A OR5L1 Missense_Mutation p.V154M 0.28 tolerated(0.09) benign(0.417) TCGA-EE-A3J5-06 11 55579670 55579670 C T OR5L1 Missense_Mutation p.S243F 0.30 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J5-06 11 55587294 55587294 C T OR5D18 Silent p.F63F 0.33 TCGA-EE-A3J5-06 11 55587350 55587350 T G OR5D18 Missense_Mutation p.M82R 0.29 deleterious(0.01) benign(0.008) TCGA-EE-A3J5-06 11 55659175 55659175 T G TRIM51 3'UTR 0.36 TCGA-EE-A3J5-06 11 55797981 55797981 G A OR5AS1 Silent p.L29L 0.31 TCGA-EE-A3J5-06 11 55798066 55798066 C T OR5AS1 Missense_Mutation p.P58S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J5-06 11 55872591 55872591 C T OR8H2 Nonsense_Mutation p.Q25* 0.27 TCGA-EE-A3J5-06 11 55873104 55873104 G A OR8H2 Missense_Mutation p.E196K 0.35 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A3J5-06 11 55944578 55944578 G A OR5J2 Missense_Mutation p.S162N 0.25 tolerated(0.31) possibly_damaging(0.756) TCGA-EE-A3J5-06 11 55999642 55999642 C T OR5T2 Missense_Mutation p.M340I 0.20 tolerated(0.29) benign(0.003) TCGA-EE-A3J5-06 11 56020266 56020266 C T OR5T3 Silent p.S197S 0.33 TCGA-EE-A3J5-06 11 56310292 56310292 A C OR5M11 Missense_Mutation p.Y148D 0.36 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 11 56344943 56344943 G A OR5M10 Silent p.F85F 0.30 TCGA-EE-A3J5-06 11 5664813 5664813 C T TRIM34 Silent p.F447F 0.33 TCGA-EE-A3J5-06 11 56954968 56954968 C T LRRC55 3'UTR 0.17 TCGA-EE-A3J5-06 11 58034436 58034436 T C OR10W1 Missense_Mutation p.N299D 0.30 tolerated(0.2) benign(0.086) TCGA-EE-A3J5-06 11 5809542 5809542 G A OR52N1 Missense_Mutation p.P169S 0.29 tolerated(0.07) probably_damaging(0.933) TCGA-EE-A3J5-06 11 59132000 59132000 G A OR5AN1 Silent p.R23R 0.20 TCGA-EE-A3J5-06 11 59189496 59189496 C A OR5A2 Missense_Mutation p.G311W 0.28 tolerated(0.19) benign(0.414) TCGA-EE-A3J5-06 11 5968870 5968870 C T OR56A3 Silent p.F98F 0.28 TCGA-EE-A3J5-06 11 6008009 6008009 A T OR52L1 Missense_Mutation p.I51N 0.15 tolerated(0.09) benign(0.052) TCGA-EE-A3J5-06 11 60230595 60230595 G A MS4A1 Splice_Site p.X93_splice 0.32 TCGA-EE-A3J5-06 11 6024279 6024279 T C OR56A4 Missense_Mutation p.T34A 0.36 deleterious_low_confidence(0.02) benign(0.388) TCGA-EE-A3J5-06 11 60557983 60557983 G A MS4A10 Missense_Mutation p.E59K 0.39 tolerated(0.46) benign(0.1) TCGA-EE-A3J5-06 11 60705349 60705349 C T SLC15A3 Silent p.K528K 0.24 TCGA-EE-A3J5-06 11 613080 613080 G A IRF7 Silent p.S438S 0.16 TCGA-EE-A3J5-06 11 613081 613081 G A IRF7 Missense_Mutation p.S438F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 11 61557365 61557365 G A TMEM258 Missense_Mutation p.R48C 0.53 tolerated(0.05) benign(0.028) TCGA-EE-A3J5-06 11 62997056 62997056 G A SLC22A25 Silent p.F23F 0.32 TCGA-EE-A3J5-06 11 64081797 64081797 C T ESRRA Missense_Mutation p.P177S 0.50 tolerated(0.59) benign(0.002) TCGA-EE-A3J5-06 11 64109170 64109170 G A CCDC88B Missense_Mutation p.G211R 0.27 tolerated(0.34) probably_damaging(0.969) TCGA-EE-A3J5-06 11 64681879 64681879 G A ATG2A Silent p.L89L 0.43 TCGA-EE-A3J5-06 11 6519549 6519549 C T DNHD1 Missense_Mutation p.P35L 0.23 benign(0.015) TCGA-EE-A3J5-06 11 6519550 6519550 C T DNHD1 Silent p.P35P 0.22 TCGA-EE-A3J5-06 11 65350324 65350324 G - EHBP1L1 Frame_Shift_Del p.E728Rfs*2 0.19 TCGA-EE-A3J5-06 11 65561716 65561716 G A OVOL1 Missense_Mutation p.M105I 0.48 tolerated(1) benign(0) TCGA-EE-A3J5-06 11 66241232 66241232 C T PELI3 Missense_Mutation p.P226S 0.20 tolerated(0.53) benign(0.032) TCGA-EE-A3J5-06 11 66359225 66359225 G A CCDC87 Missense_Mutation p.S421F 0.30 deleterious(0.04) benign(0.086) TCGA-EE-A3J5-06 11 66613527 66613527 G A RCE1 Silent p.L317L 0.25 TCGA-EE-A3J5-06 11 67161032 67161032 C T RAD9A Silent p.S100S 0.14 TCGA-EE-A3J5-06 11 67223794 67223794 T G CABP4 Missense_Mutation p.F141C 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 11 67434405 67434405 A C ALDH3B2 Translation_Start_Site p.M1? 0.30 deleterious(0) probably_damaging(0.961) TCGA-EE-A3J5-06 11 6964834 6964834 G A ZNF215 Nonsense_Mutation p.W225* 0.20 TCGA-EE-A3J5-06 11 6964835 6964835 G A ZNF215 Nonsense_Mutation p.W225* 0.21 TCGA-EE-A3J5-06 11 70336414 70336414 G A SHANK2 Missense_Mutation p.P841S 0.28 deleterious(0.04) benign(0.432) TCGA-EE-A3J5-06 11 7064407 7064407 G A NLRP14 Missense_Mutation p.E384K 0.36 tolerated(0.12) benign(0.209) TCGA-EE-A3J5-06 11 72421435 72421435 G A ARAP1 Silent p.L471L 0.26 TCGA-EE-A3J5-06 11 74876915 74876915 C T SLCO2B1 Silent p.I123I 0.34 TCGA-EE-A3J5-06 11 75168812 75168812 C T GDPD5 Missense_Mutation p.G81S 0.22 deleterious(0) probably_damaging(0.986) TCGA-EE-A3J5-06 11 76371759 76371759 G A LRRC32 Missense_Mutation p.P293L 0.33 tolerated(0.06) benign(0.003) TCGA-EE-A3J5-06 11 7656819 7656819 C T PPFIBP2 Missense_Mutation p.P411S 0.33 tolerated(0.14) benign(0.002) TCGA-EE-A3J5-06 11 78369095 78369095 C T TENM4 3'UTR 0.22 TCGA-EE-A3J5-06 11 78440676 78440676 C T TENM4 Missense_Mutation p.E1051K 0.33 deleterious(0.01) benign(0.101) TCGA-EE-A3J5-06 11 7981250 7981250 C T NLRP10 Missense_Mutation p.E637K 0.25 tolerated(0.64) benign(0.005) TCGA-EE-A3J5-06 11 7981922 7981922 G A NLRP10 Silent p.L413L 0.20 TCGA-EE-A3J5-06 11 7982421 7982421 G A NLRP10 Silent p.F246F 0.29 TCGA-EE-A3J5-06 11 82643743 82643743 C T C11orf82 Missense_Mutation p.H455Y 0.38 tolerated(0.11) benign(0.007) TCGA-EE-A3J5-06 11 82868563 82868563 G A PCF11 Missense_Mutation p.D28N 0.30 deleterious(0) probably_damaging(0.979) TCGA-EE-A3J5-06 11 8496277 8496277 C T STK33 Missense_Mutation p.R59K 0.39 tolerated_low_confidence(0.13) benign(0.006) TCGA-EE-A3J5-06 11 86153922 86153922 C T ME3 Missense_Mutation p.G532R 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 11 88911082 88911082 T A TYR 5'UTR 0.27 TCGA-EE-A3J5-06 11 89392709 89392709 A G FOLH1B RNA 0.37 TCGA-EE-A3J5-06 11 89424095 89424095 G A FOLH1B RNA 0.20 TCGA-EE-A3J5-06 11 9048913 9048913 G A SCUBE2 Missense_Mutation p.T843I 0.30 deleterious(0) possibly_damaging(0.498) TCGA-EE-A3J5-06 11 9164351 9164351 A T DENND5A Silent p.L1143L 0.32 TCGA-EE-A3J5-06 11 92087738 92087738 T A FAT3 Missense_Mutation p.N820K 0.38 benign(0.102) TCGA-EE-A3J5-06 11 92616136 92616136 T C FAT3 Missense_Mutation p.F4172L 0.38 benign(0.141) TCGA-EE-A3J5-06 11 93521348 93521348 T A MED17 Intron 0.42 TCGA-EE-A3J5-06 11 93797524 93797524 G A HEPHL1 Missense_Mutation p.R219Q 0.25 tolerated(0.07) possibly_damaging(0.863) TCGA-EE-A3J5-06 11 94039822 94039822 C T FOLR4 Silent p.I94I 0.34 TCGA-EE-A3J5-06 11 9459350 9459350 T G IPO7 Missense_Mutation p.V773G 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J5-06 11 9517924 9517924 A G ZNF143 Silent p.T280T 0.29 TCGA-EE-A3J5-06 11 95712866 95712866 G A MAML2 Missense_Mutation p.P906L 0.28 unknown(0) TCGA-EE-A3J5-06 11 9878064 9878064 G A SBF2 Silent p.L768L 0.30 TCGA-EE-A3J5-06 11 99786792 99786792 G A CNTN5 Missense_Mutation p.G195E 0.29 tolerated(1) possibly_damaging(0.448) TCGA-EE-A3J5-06 12 100551089 100551089 C T AC010203.1 RNA 0.38 TCGA-EE-A3J5-06 12 101018124 101018124 C T GAS2L3 Missense_Mutation p.S514F 0.45 deleterious(0) possibly_damaging(0.577) TCGA-EE-A3J5-06 12 101295436 101295436 C T ANO4 5'UTR 0.38 TCGA-EE-A3J5-06 12 101520726 101520726 C T ANO4 Nonsense_Mutation p.R881* 0.40 TCGA-EE-A3J5-06 12 101550992 101550992 C T SLC5A8 3'UTR 0.27 TCGA-EE-A3J5-06 12 101552103 101552103 C T SLC5A8 Missense_Mutation p.G545E 0.26 tolerated(0.11) probably_damaging(0.984) TCGA-EE-A3J5-06 12 101584311 101584311 G A SLC5A8 Silent p.I256I 0.32 TCGA-EE-A3J5-06 12 101715405 101715405 G A UTP20 Missense_Mutation p.M1013I 0.29 tolerated(0.08) benign(0.256) TCGA-EE-A3J5-06 12 102057248 102057248 G C MYBPC1 Missense_Mutation p.D731H 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 103696003 103696003 G A C12orf42 Silent p.F322F 0.34 TCGA-EE-A3J5-06 12 104131471 104131471 C T STAB2 Silent p.D1870D 0.36 TCGA-EE-A3J5-06 12 104138999 104138999 C T STAB2 Missense_Mutation p.S2027F 0.30 deleterious(0) probably_damaging(0.965) TCGA-EE-A3J5-06 12 104139000 104139000 C T STAB2 Silent p.S2027S 0.30 TCGA-EE-A3J5-06 12 104327931 104327931 C T HSP90B1 Silent p.F203F 0.30 TCGA-EE-A3J5-06 12 104327932 104327932 C T HSP90B1 Missense_Mutation p.L204F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 104391273 104391273 T C GLT8D2 Missense_Mutation p.Q148R 0.36 tolerated(0.51) benign(0.006) TCGA-EE-A3J5-06 12 105551072 105551072 C T KIAA1033 Missense_Mutation p.L962F 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3J5-06 12 105582226 105582226 C T APPL2 Splice_Site p.X493_splice 0.40 TCGA-EE-A3J5-06 12 108013852 108013852 G A BTBD11 Missense_Mutation p.E848K 0.26 deleterious(0.01) possibly_damaging(0.724) TCGA-EE-A3J5-06 12 108642127 108642127 C T WSCD2 3'UTR 0.27 TCGA-EE-A3J5-06 12 10978133 10978133 C T TAS2R10 Missense_Mutation p.E246K 0.35 deleterious(0.05) possibly_damaging(0.716) TCGA-EE-A3J5-06 12 111748373 111748373 A G CUX2 Missense_Mutation p.K596R 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 111758418 111758418 C T CUX2 Missense_Mutation p.P869S 0.24 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A3J5-06 12 111785460 111785460 G A CUX2 Silent p.E1264E 0.37 TCGA-EE-A3J5-06 12 111951182 111951182 A G ATXN2 Missense_Mutation p.W673R 0.30 probably_damaging(0.999) TCGA-EE-A3J5-06 12 112237856 112237856 G A ALDH2 Silent p.A465A 0.47 TCGA-EE-A3J5-06 12 112491380 112491380 A G NAA25 Silent p.F570F 0.45 TCGA-EE-A3J5-06 12 112673321 112673321 A T HECTD4 Missense_Mutation p.D1758E 0.46 probably_damaging(0.986) TCGA-EE-A3J5-06 12 113344883 113344883 C A OAS1 Missense_Mutation p.D13E 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3J5-06 12 113425020 113425020 G A OAS2 Missense_Mutation p.E119K 0.28 tolerated(0.23) benign(0.036) TCGA-EE-A3J5-06 12 113448107 113448107 C T OAS2 Intron 0.34 TCGA-EE-A3J5-06 12 113532914 113532914 G A DTX1 Missense_Mutation p.G485E 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 113835141 113835141 C T SDS Missense_Mutation p.G161E 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3J5-06 12 113835142 113835142 C T SDS Missense_Mutation p.G161R 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 12 113909184 113909184 C T LHX5 Silent p.S40S 0.21 TCGA-EE-A3J5-06 12 11420585 11420585 G A PRB3 Missense_Mutation p.R200C 0.24 deleterious(0.01) unknown(0) TCGA-EE-A3J5-06 12 114282522 114282522 G A RBM19 Silent p.S912S 0.30 TCGA-EE-A3J5-06 12 114384269 114384269 G A RBM19 Silent p.L473L 0.26 TCGA-EE-A3J5-06 12 11506108 11506108 G A PRB1 Missense_Mutation p.P177L 0.63 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A3J5-06 12 11546170 11546170 C T PRB2 Missense_Mutation p.G281E 0.33 tolerated(0.41) unknown(0) TCGA-EE-A3J5-06 12 116435009 116435009 G A MED13L Missense_Mutation p.P866S 0.30 deleterious(0) unknown(0) TCGA-EE-A3J5-06 12 117426628 117426628 T C FBXW8 Missense_Mutation p.V398A 0.33 tolerated(1) benign(0.006) TCGA-EE-A3J5-06 12 117462069 117462069 C A FBXW8 Silent p.G495G 0.34 TCGA-EE-A3J5-06 12 117462070 117462070 C T FBXW8 Silent p.L496L 0.36 TCGA-EE-A3J5-06 12 117672529 117672529 C T NOS1 Missense_Mutation p.G1060R 0.31 deleterious(0.04) possibly_damaging(0.626) TCGA-EE-A3J5-06 12 117696830 117696830 C T NOS1 Splice_Site p.X824_splice 0.29 TCGA-EE-A3J5-06 12 117768314 117768314 G A NOS1 Silent p.P187P 0.34 TCGA-EE-A3J5-06 12 118598005 118598005 G A TAOK3 Silent p.A766A 0.30 TCGA-EE-A3J5-06 12 120114362 120114362 G A PRKAB1 Missense_Mutation p.G185R 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3J5-06 12 120572391 120572391 G A GCN1L1 Missense_Mutation p.P2383L 0.42 probably_damaging(0.965) TCGA-EE-A3J5-06 12 121868128 121868128 C T KDM2B Missense_Mutation p.G1325E 0.22 tolerated(0.6) benign(0.045) TCGA-EE-A3J5-06 12 121868129 121868129 C T KDM2B Missense_Mutation p.G1325R 0.21 tolerated(0.57) possibly_damaging(0.73) TCGA-EE-A3J5-06 12 123073312 123073312 A T KNTC1 Missense_Mutation p.K1316N 0.45 deleterious(0.03) probably_damaging(0.981) TCGA-EE-A3J5-06 12 123834984 123834984 A C SBNO1 Missense_Mutation p.V2G 0.34 deleterious_low_confidence(0) benign(0.145) TCGA-EE-A3J5-06 12 124114824 124114824 G A EIF2B1 Silent p.S87S 0.32 TCGA-EE-A3J5-06 12 124114825 124114825 G A EIF2B1 Missense_Mutation p.S87F 0.33 deleterious(0.01) benign(0.178) TCGA-EE-A3J5-06 12 124181719 124181719 G C TCTN2 Silent p.G493G 0.29 TCGA-EE-A3J5-06 12 124311422 124311422 G A DNAH10 Silent p.L1338L 0.37 TCGA-EE-A3J5-06 12 126138444 126138444 G A TMEM132B Missense_Mutation p.E809K 0.34 tolerated(0.3) benign(0.392) TCGA-EE-A3J5-06 12 130927093 130927093 G A RIMBP2 Silent p.F251F 0.35 TCGA-EE-A3J5-06 12 131620698 131620698 A G GPR133 Missense_Mutation p.N795S 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3J5-06 12 132398374 132398374 C T ULK1 Missense_Mutation p.P414S 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A3J5-06 12 133294599 133294599 C T PGAM5 Silent p.I204I 0.28 TCGA-EE-A3J5-06 12 13716752 13716752 C T GRIN2B Silent p.K1140K 0.30 TCGA-EE-A3J5-06 12 14794085 14794085 C T GUCY2C Missense_Mutation p.G667R 0.40 deleterious(0) probably_damaging(0.976) TCGA-EE-A3J5-06 12 15370481 15370481 T C RERG 5'UTR 0.45 TCGA-EE-A3J5-06 12 18242180 18242180 G A RERGL Missense_Mutation p.S13F 0.25 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-EE-A3J5-06 12 18854635 18854635 C T PLCZ1 Missense_Mutation p.D314N 0.29 tolerated(0.2) benign(0.004) TCGA-EE-A3J5-06 12 18891529 18891529 C T CAPZA3 Silent p.I109I 0.35 TCGA-EE-A3J5-06 12 1943807 1943807 G A LRTM2 Missense_Mutation p.E345K 0.32 tolerated(0.06) possibly_damaging(0.493) TCGA-EE-A3J5-06 12 20832975 20832975 T A PDE3A Missense_Mutation p.F1066I 0.38 tolerated(0.39) benign(0.045) TCGA-EE-A3J5-06 12 20885978 20885978 C T SLCO1C1 Missense_Mutation p.S441F 0.34 tolerated(0.58) benign(0.093) TCGA-EE-A3J5-06 12 21032498 21032498 C T SLCO1B3 Nonsense_Mutation p.Q422* 0.36 TCGA-EE-A3J5-06 12 21036376 21036376 G A SLCO1B3 Missense_Mutation p.E508K 0.38 tolerated(0.1) benign(0.344) TCGA-EE-A3J5-06 12 21036450 21036450 G A SLCO1B3 Silent p.R532R 0.24 TCGA-EE-A3J5-06 12 21325684 21325684 C T SLCO1B1 Missense_Mutation p.S62F 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A3J5-06 12 21327511 21327511 G A SLCO1B1 Missense_Mutation p.G76E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 21453304 21453304 C T SLCO1A2 Silent p.K296K 0.20 TCGA-EE-A3J5-06 12 22078907 22078907 G A ABCC9 Silent p.I125I 0.34 TCGA-EE-A3J5-06 12 26714877 26714877 G A ITPR2 Missense_Mutation p.R1547C 0.20 deleterious(0) possibly_damaging(0.847) TCGA-EE-A3J5-06 12 2694603 2694603 G A CACNA1C Missense_Mutation p.E801K 0.30 tolerated(0.16) benign(0.005) TCGA-EE-A3J5-06 12 2910422 2910422 C T FKBP4 Missense_Mutation p.T391I 0.27 tolerated(0.15) benign(0.008) TCGA-EE-A3J5-06 12 2910423 2910423 C T FKBP4 Silent p.T391T 0.26 TCGA-EE-A3J5-06 12 2933032 2933032 G A ITFG2 Missense_Mutation p.R388Q 0.39 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3J5-06 12 2937127 2937127 C T NRIP2 Missense_Mutation p.G222E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 12 29423427 29423429 CAC TA FAR2 Frame_Shift_Del p.T16Rfs*11 0.30 TCGA-EE-A3J5-06 12 32520652 32520652 C T BICD1 Missense_Mutation p.A938V 0.38 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-EE-A3J5-06 12 32974436 32974436 C T PKP2 Missense_Mutation p.E667K 0.30 deleterious(0) possibly_damaging(0.831) TCGA-EE-A3J5-06 12 32994000 32994000 G A PKP2 Silent p.L550L 0.33 TCGA-EE-A3J5-06 12 33021996 33021996 C T PKP2 Silent p.G345G 0.31 TCGA-EE-A3J5-06 12 33560283 33560283 G A SYT10 Missense_Mutation p.S173F 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 12 33579150 33579150 G A SYT10 Silent p.V144V 0.39 TCGA-EE-A3J5-06 12 336799 336799 G A SLC6A13 Silent p.S289S 0.30 TCGA-EE-A3J5-06 12 3806092 3806092 C T EFCAB4B Missense_Mutation p.G25E 0.34 tolerated_low_confidence(0.45) benign(0.025) TCGA-EE-A3J5-06 12 3939121 3939121 C G PARP11 Missense_Mutation p.D28H 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 41967546 41967546 G A PDZRN4 Missense_Mutation p.E989K 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 12 43821191 43821191 C T ADAMTS20 Missense_Mutation p.D1343N 0.38 tolerated(0.07) benign(0.09) TCGA-EE-A3J5-06 12 43825277 43825277 C T ADAMTS20 Missense_Mutation p.G1040E 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 12 43846451 43846451 C T ADAMTS20 Missense_Mutation p.R603Q 0.26 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J5-06 12 45410272 45410272 G A DBX2 Missense_Mutation p.P273S 0.26 tolerated(0.46) benign(0.004) TCGA-EE-A3J5-06 12 4543548 4543548 G A FGF6 Nonsense_Mutation p.Q154* 0.26 TCGA-EE-A3J5-06 12 4554710 4554710 G A FGF6 Silent p.I9I 0.43 TCGA-EE-A3J5-06 12 46318574 46318574 G A SCAF11 Silent p.P1281P 0.32 TCGA-EE-A3J5-06 12 46321796 46321796 G A SCAF11 Missense_Mutation p.P563L 0.30 deleterious(0.04) benign(0.221) TCGA-EE-A3J5-06 12 463297 463297 G A KDM5A Missense_Mutation p.P325L 0.32 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J5-06 12 47173432 47173432 C T SLC38A4 Missense_Mutation p.G227R 0.28 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 12 4737609 4737609 T A AKAP3 Missense_Mutation p.K153N 0.38 deleterious(0) possibly_damaging(0.701) TCGA-EE-A3J5-06 12 48110139 48110139 C T ENDOU Missense_Mutation p.R232K 0.38 tolerated(0.75) benign(0.026) TCGA-EE-A3J5-06 12 48110140 48110140 T C ENDOU Missense_Mutation p.R232G 0.38 tolerated(0.18) benign(0.008) TCGA-EE-A3J5-06 12 48133002 48133002 C T RAPGEF3 Nonsense_Mutation p.W795* 0.45 TCGA-EE-A3J5-06 12 48272727 48272727 G A VDR Intron 0.32 TCGA-EE-A3J5-06 12 48375124 48375124 A C COL2A1 Splice_Site p.X821_splice 0.20 TCGA-EE-A3J5-06 12 4920518 4920518 C T KCNA6 Silent p.I437I 0.33 TCGA-EE-A3J5-06 12 49221400 49221400 G A CACNB3 Silent p.E391E 0.33 TCGA-EE-A3J5-06 12 49251764 49251764 C T RND1 3'UTR 0.37 TCGA-EE-A3J5-06 12 49412559 49412559 G A PRKAG1 5'UTR 0.46 TCGA-EE-A3J5-06 12 50189359 50189359 C T NCKAP5L Missense_Mutation p.D762N 0.48 tolerated(0.17) probably_damaging(0.983) TCGA-EE-A3J5-06 12 50189360 50189360 C T NCKAP5L Silent p.V761V 0.46 TCGA-EE-A3J5-06 12 50190431 50190431 G A NCKAP5L Silent p.P404P 0.35 TCGA-EE-A3J5-06 12 50473723 50473723 G A ASIC1 Missense_Mutation p.E364K 0.30 tolerated(0.13) benign(0.071) TCGA-EE-A3J5-06 12 5154291 5154291 C T KCNA5 Silent p.I326I 0.30 TCGA-EE-A3J5-06 12 51723610 51723610 G A CELA1 Missense_Mutation p.S206F 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3J5-06 12 51882498 51882498 C T SLC4A8 Missense_Mutation p.R768C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 12 52632527 52632527 G A KRT7 Missense_Mutation p.E221K 0.31 deleterious(0.02) benign(0.133) TCGA-EE-A3J5-06 12 52827961 52827961 C T KRT75 Missense_Mutation p.G43E 0.36 deleterious(0.02) possibly_damaging(0.489) TCGA-EE-A3J5-06 12 52884658 52884658 C T KRT6A Missense_Mutation p.R299K 0.32 tolerated(0.39) benign(0.123) TCGA-EE-A3J5-06 12 52966443 52966443 G A KRT74 Silent p.F160F 0.35 TCGA-EE-A3J5-06 12 53038870 53038870 C A KRT2 Missense_Mutation p.G618V 0.28 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J5-06 12 53045727 53045727 C T KRT2 Missense_Mutation p.G67E 0.20 deleterious(0.01) unknown(0) TCGA-EE-A3J5-06 12 53166002 53166002 A G KRT76 Missense_Mutation p.V338A 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 12 53467119 53467119 C - SPRYD3 Frame_Shift_Del p.S215Ifs*22 0.21 TCGA-EE-A3J5-06 12 53470949 53470949 G A SPRYD3 Silent p.F40F 0.34 TCGA-EE-A3J5-06 12 53682885 53682885 C T ESPL1 Silent p.L1574L 0.27 TCGA-EE-A3J5-06 12 53701346 53701346 G T AAAS Missense_Mutation p.P523Q 0.35 deleterious_low_confidence(0.01) benign(0.203) TCGA-EE-A3J5-06 12 53803251 53803251 T C SP1 Silent p.H650H 0.37 TCGA-EE-A3J5-06 12 53839966 53839966 C T PRR13 3'UTR 0.18 TCGA-EE-A3J5-06 12 54063657 54063657 C T ATP5G2 Missense_Mutation p.E96K 0.25 tolerated_low_confidence(0.15) benign(0.023) TCGA-EE-A3J5-06 12 54795612 54795612 G A ITGA5 Missense_Mutation p.P752S 0.29 tolerated(0.25) possibly_damaging(0.825) TCGA-EE-A3J5-06 12 54799100 54799100 G A ITGA5 Missense_Mutation p.P359S 0.23 tolerated(0.08) benign(0.006) TCGA-EE-A3J5-06 12 55714946 55714946 C T OR6C1 Missense_Mutation p.S188L 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.864) TCGA-EE-A3J5-06 12 55715170 55715170 A G OR6C1 Missense_Mutation p.K263E 0.36 tolerated_low_confidence(0.08) benign(0.03) TCGA-EE-A3J5-06 12 55725967 55725967 C T OR6C3 Silent p.L161L 0.31 TCGA-EE-A3J5-06 12 55758905 55758905 C T OR6C75 Missense_Mutation p.S4F 0.25 deleterious_low_confidence(0.01) benign(0.006) TCGA-EE-A3J5-06 12 55820040 55820040 G A OR6C76 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0.01) benign(0.049) TCGA-EE-A3J5-06 12 55820648 55820648 T C OR6C76 Missense_Mutation p.L204P 0.34 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-EE-A3J5-06 12 55820738 55820738 C T OR6C76 Missense_Mutation p.A234V 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3J5-06 12 55820739 55820739 C T OR6C76 Silent p.A234A 0.30 TCGA-EE-A3J5-06 12 55846191 55846191 C T OR6C2 Missense_Mutation p.S65F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-EE-A3J5-06 12 56086729 56086729 C T ITGA7 Missense_Mutation p.E919K 0.34 tolerated(0.3) benign(0.073) TCGA-EE-A3J5-06 12 56490268 56490268 C T ERBB3 Intron 0.32 TCGA-EE-A3J5-06 12 57584759 57584759 C T LRP1 Silent p.I2401I 0.27 TCGA-EE-A3J5-06 12 57594309 57594309 C T LRP1 Missense_Mutation p.P3367S 0.43 benign(0.011) TCGA-EE-A3J5-06 12 57594310 57594310 C T LRP1 Missense_Mutation p.P3367L 0.44 benign(0.129) TCGA-EE-A3J5-06 12 57603498 57603498 G A LRP1 Missense_Mutation p.D4096N 0.48 probably_damaging(0.959) TCGA-EE-A3J5-06 12 57662177 57662177 G A R3HDM2 Missense_Mutation p.P633S 0.34 deleterious(0.03) benign(0.126) TCGA-EE-A3J5-06 12 57828910 57828910 G - INHBC Frame_Shift_Del p.V82Sfs*7 0.22 TCGA-EE-A3J5-06 12 57965879 57965879 C T KIF5A Silent p.V466V 0.38 TCGA-EE-A3J5-06 12 57976385 57976385 G A KIF5A Missense_Mutation p.G998E 0.31 deleterious_low_confidence(0) benign(0.108) TCGA-EE-A3J5-06 12 58217371 58217371 G A CTDSP2 3'UTR 0.28 TCGA-EE-A3J5-06 12 6076679 6076679 C T VWF Silent p.R2620R 0.37 TCGA-EE-A3J5-06 12 62147424 62147424 C T FAM19A2 Silent p.G121G 0.38 TCGA-EE-A3J5-06 12 6426818 6426818 A T PLEKHG6 Nonsense_Mutation p.K325* 0.33 TCGA-EE-A3J5-06 12 64502736 64502736 C T SRGAP1 Missense_Mutation p.A613V 0.34 tolerated(0.6) benign(0.441) TCGA-EE-A3J5-06 12 64521498 64521498 T A SRGAP1 Nonsense_Mutation p.L845* 0.37 TCGA-EE-A3J5-06 12 65146506 65146506 C T GNS Missense_Mutation p.G75E 0.47 deleterious(0) possibly_damaging(0.853) TCGA-EE-A3J5-06 12 653569 653569 G A B4GALNT3 Missense_Mutation p.R139K 0.34 deleterious(0.03) benign(0.255) TCGA-EE-A3J5-06 12 65462560 65462560 A C WIF1 Missense_Mutation p.F174L 0.33 tolerated(0.14) benign(0.035) TCGA-EE-A3J5-06 12 6559706 6559706 G A CD27 Splice_Site p.X150_splice 0.38 TCGA-EE-A3J5-06 12 66152165 66152165 G A RPSAP52 RNA 0.20 TCGA-EE-A3J5-06 12 6669313 6669313 G A NOP2 Silent p.F613F 0.32 TCGA-EE-A3J5-06 12 6692287 6692287 G A CHD4 Intron 0.40 TCGA-EE-A3J5-06 12 67701251 67701251 C T CAND1 Missense_Mutation p.P1002S 0.28 tolerated(0.79) benign(0.001) TCGA-EE-A3J5-06 12 6882409 6882409 G A LAG3 Missense_Mutation p.G37E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 12 69114938 69114938 T C NUP107 Missense_Mutation p.L431S 0.37 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J5-06 12 69965945 69965945 C T FRS2 Missense_Mutation p.P154S 0.39 deleterious(0.05) benign(0.03) TCGA-EE-A3J5-06 12 71032987 71032987 G A PTPRR Missense_Mutation p.L651F 0.33 deleterious(0.01) benign(0.169) TCGA-EE-A3J5-06 12 72338074 72338074 G A TPH2 Missense_Mutation p.E86K 0.35 tolerated(0.2) benign(0.236) TCGA-EE-A3J5-06 12 72343389 72343389 C T TPH2 Nonsense_Mutation p.R188* 0.35 TCGA-EE-A3J5-06 12 7556215 7556215 C T CD163L1 Missense_Mutation p.E442K 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 12 7559343 7559343 C T CD163L1 Nonsense_Mutation p.W291* 0.33 TCGA-EE-A3J5-06 12 7586146 7586146 C T CD163L1 Missense_Mutation p.G90E 0.39 tolerated(0.21) probably_damaging(0.999) TCGA-EE-A3J5-06 12 7633791 7633791 C T CD163 Silent p.L1103L 0.38 TCGA-EE-A3J5-06 12 7635321 7635321 C T CD163 Silent p.G1055G 0.35 TCGA-EE-A3J5-06 12 7649413 7649413 A G CD163 Silent p.C365C 0.32 TCGA-EE-A3J5-06 12 7890163 7890163 G A CLEC4C Silent p.S81S 0.36 TCGA-EE-A3J5-06 12 80672816 80672816 G A OTOGL Missense_Mutation p.R924Q 0.34 tolerated(1) possibly_damaging(0.709) TCGA-EE-A3J5-06 12 81205386 81205386 C T LIN7A Missense_Mutation p.R187Q 0.33 tolerated(0.45) possibly_damaging(0.857) TCGA-EE-A3J5-06 12 81741400 81741400 C T PPFIA2 Missense_Mutation p.S715N 0.29 tolerated(0.08) probably_damaging(0.944) TCGA-EE-A3J5-06 12 8329951 8329951 G A ZNF705A Silent p.E225E 0.35 TCGA-EE-A3J5-06 12 85279304 85279304 T A SLC6A15 Missense_Mutation p.I162F 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 12 8672856 8672856 C T CLEC4D Missense_Mutation p.S140F 0.33 deleterious(0) probably_damaging(0.978) TCGA-EE-A3J5-06 12 88374098 88374098 A G C12orf50 3'UTR 0.30 TCGA-EE-A3J5-06 12 88500490 88500490 C T CEP290 Missense_Mutation p.E927K 0.16 benign(0.075) TCGA-EE-A3J5-06 12 9000193 9000193 G C A2ML1 Missense_Mutation p.E578Q 0.33 tolerated(0.66) benign(0.042) TCGA-EE-A3J5-06 12 9000234 9000234 C T A2ML1 Silent p.L591L 0.37 TCGA-EE-A3J5-06 12 9074344 9074344 C G PHC1 Missense_Mutation p.R152G 0.34 deleterious(0) probably_damaging(0.937) TCGA-EE-A3J5-06 12 95566440 95566440 G A FGD6 Missense_Mutation p.S841F 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A3J5-06 12 95869888 95869888 G A METAP2 Missense_Mutation p.D65N 0.50 tolerated_low_confidence(0.22) benign(0.001) TCGA-EE-A3J5-06 12 97093801 97093801 C T C12orf55 Missense_Mutation p.S2135F 0.36 tolerated(0.19) possibly_damaging(0.686) TCGA-EE-A3J5-06 12 97957657 97957657 G A MIR135A2 RNA 0.29 TCGA-EE-A3J5-06 12 995046 995046 C T WNK1 Silent p.I1692I 0.31 TCGA-EE-A3J5-06 13 101726006 101726006 C T NALCN Missense_Mutation p.G1376E 0.61 tolerated(0.28) possibly_damaging(0.561) TCGA-EE-A3J5-06 13 114498132 114498132 G A TMEM255B Silent p.A88A 0.53 TCGA-EE-A3J5-06 13 114793396 114793396 C A RASA3 Nonsense_Mutation p.E153* 0.55 TCGA-EE-A3J5-06 13 21734066 21734066 G A SKA3 Missense_Mutation p.P297L 0.54 deleterious(0) probably_damaging(0.959) TCGA-EE-A3J5-06 13 22246207 22246207 G A FGF9 Silent p.T52T 0.66 TCGA-EE-A3J5-06 13 32798488 32798488 C T FRY Missense_Mutation p.P1628S 0.63 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 13 37447020 37447020 C T SMAD9 Missense_Mutation p.E149K 0.52 deleterious(0.04) probably_damaging(0.945) TCGA-EE-A3J5-06 13 40268836 40268836 C T COG6 Silent p.L380L 0.56 TCGA-EE-A3J5-06 13 41523980 41523980 G A ELF1 Missense_Mutation p.P164L 0.56 tolerated(0.41) benign(0.012) TCGA-EE-A3J5-06 13 41523981 41523981 G A ELF1 Missense_Mutation p.P164S 0.56 tolerated(0.5) benign(0.031) TCGA-EE-A3J5-06 13 42044633 42044633 C T RGCC 3'UTR 0.57 TCGA-EE-A3J5-06 13 42275549 42275549 A C VWA8 Missense_Mutation p.C1115G 0.64 tolerated(0.16) benign(0.003) TCGA-EE-A3J5-06 13 42874187 42874187 C T AKAP11 Silent p.R435R 0.64 TCGA-EE-A3J5-06 13 48923137 48923137 G A RB1 Nonsense_Mutation p.W195* 0.60 TCGA-EE-A3J5-06 13 49760215 49760215 C T FNDC3A Missense_Mutation p.S578L 0.55 deleterious(0.04) benign(0.048) TCGA-EE-A3J5-06 13 77754364 77754364 C T MYCBP2 Silent p.L1639L 0.53 TCGA-EE-A3J5-06 13 78320910 78320910 C T SLAIN1 Missense_Mutation p.P229L 0.67 deleterious(0.02) unknown(0) TCGA-EE-A3J5-06 13 96238358 96238358 C T DZIP1 Missense_Mutation p.E751K 0.77 tolerated(0.08) probably_damaging(0.939) TCGA-EE-A3J5-06 13 99083332 99083332 C T FARP1 Silent p.A647A 0.66 TCGA-EE-A3J5-06 14 101350867 101350867 C T RTL1 Missense_Mutation p.E87K 0.44 tolerated_low_confidence(0.06) benign(0.044) TCGA-EE-A3J5-06 14 101351016 101351016 G A RTL1 Missense_Mutation p.S37L 0.16 tolerated_low_confidence(0.1) benign(0.017) TCGA-EE-A3J5-06 14 101435294 101435294 G A SNORD114-12 RNA 0.08 TCGA-EE-A3J5-06 14 101526986 101526986 C T MIR496 RNA 0.48 TCGA-EE-A3J5-06 14 101532322 101532322 C T MIR410 RNA 0.35 TCGA-EE-A3J5-06 14 102891482 102891482 G A TECPR2 Missense_Mutation p.E269K 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 14 104206791 104206791 G A PPP1R13B Silent p.P654P 0.55 TCGA-EE-A3J5-06 14 105353335 105353335 C T CEP170B Missense_Mutation p.A920V 0.59 tolerated(0.24) possibly_damaging(0.868) TCGA-EE-A3J5-06 14 105406959 105406959 A G AHNAK2 Silent p.D4943D 0.16 TCGA-EE-A3J5-06 14 105411707 105411707 G A AHNAK2 Missense_Mutation p.P3361S 0.49 probably_damaging(0.996) TCGA-EE-A3J5-06 14 106053529 106053529 C T IGHA2 Silent p.Q256Q 0.27 TCGA-EE-A3J5-06 14 106173760 106173760 C T IGHA1 Silent p.Q269Q 0.11 TCGA-EE-A3J5-06 14 106321303 106321303 G A IGHM Missense_Mutation p.P229L 0.06 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 14 106610562 106610562 G A IGHV3-15 Silent p.S36S 0.43 TCGA-EE-A3J5-06 14 106815929 106815929 G A IGHV3-33 Silent p.F48F 0.31 TCGA-EE-A3J5-06 14 107083416 107083416 C T IGHV4-59 Missense_Mutation p.G63E 0.35 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-EE-A3J5-06 14 19553749 19553749 G A POTEG Silent p.G111G 0.09 TCGA-EE-A3J5-06 14 19553932 19553932 A G POTEG Silent p.Q172Q 0.11 TCGA-EE-A3J5-06 14 20002242 20002242 C T POTEM Missense_Mutation p.E394K 0.10 deleterious(0.02) benign(0.036) TCGA-EE-A3J5-06 14 20295862 20295862 C T OR4N2 Silent p.F85F 0.26 TCGA-EE-A3J5-06 14 20389080 20389080 C T OR4K5 Silent p.H105H 0.05 TCGA-EE-A3J5-06 14 20502478 20502478 G A OR4K13 Missense_Mutation p.S147F 0.56 tolerated(0.18) benign(0.002) TCGA-EE-A3J5-06 14 20502786 20502786 G A OR4K13 Silent p.L44L 0.09 TCGA-EE-A3J5-06 14 20848394 20848394 C T TEP1 Missense_Mutation p.S1668N 0.55 tolerated(0.08) benign(0.014) TCGA-EE-A3J5-06 14 21052426 21052426 C T RNASE11 Missense_Mutation p.D70N 0.50 tolerated(0.51) benign(0.023) TCGA-EE-A3J5-06 14 21109737 21109737 G A OR6S1 Silent p.L38L 0.43 TCGA-EE-A3J5-06 14 21544721 21544721 G A ARHGEF40 Splice_Site p.X613_splice 0.48 TCGA-EE-A3J5-06 14 21544722 21544722 G A ARHGEF40 Missense_Mutation p.D613N 0.48 tolerated(0.06) benign(0.003) TCGA-EE-A3J5-06 14 21793453 21793453 C T RPGRIP1 Missense_Mutation p.P760S 0.43 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 14 21834651 21834651 G A SUPT16H Silent p.D331D 0.10 TCGA-EE-A3J5-06 14 21873897 21873897 G A CHD8 Missense_Mutation p.L1012F 0.06 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 14 21960511 21960511 T C TOX4 Silent p.A289A 0.51 TCGA-EE-A3J5-06 14 21992561 21992561 G A SALL2 Missense_Mutation p.P434L 0.57 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 14 22315350 22315350 G A TRAV8-2 Silent p.T96T 0.12 TCGA-EE-A3J5-06 14 22564750 22564750 C T TRDV1 Silent p.F67F 0.07 TCGA-EE-A3J5-06 14 22931948 22931948 C T TRDC Missense_Mutation p.S9F 0.60 deleterious(0) benign(0.181) TCGA-EE-A3J5-06 14 23058021 23058021 C T DAD1 Missense_Mutation p.E15K 0.11 tolerated(0.57) probably_damaging(0.996) TCGA-EE-A3J5-06 14 23282439 23282439 C A SLC7A7 Missense_Mutation p.V57F 0.08 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 14 23345369 23345369 C T LRP10 Silent p.F404F 0.58 TCGA-EE-A3J5-06 14 23778028 23778028 G A BCL2L2 Missense_Mutation p.E146K 0.52 tolerated(0.87) benign(0.008) TCGA-EE-A3J5-06 14 24528363 24528363 C T LRRC16B Missense_Mutation p.H531Y 0.67 deleterious(0.02) possibly_damaging(0.643) TCGA-EE-A3J5-06 14 24586911 24586911 C T DCAF11 Missense_Mutation p.S149F 0.62 deleterious(0) probably_damaging(0.91) TCGA-EE-A3J5-06 14 24608200 24608200 G A EMC9 3'UTR 0.60 TCGA-EE-A3J5-06 14 24608201 24608201 G A EMC9 3'UTR 0.60 TCGA-EE-A3J5-06 14 24619980 24619980 C T RNF31 Silent p.P457P 0.07 TCGA-EE-A3J5-06 14 24627402 24627402 C T RNF31 Missense_Mutation p.P965S 0.05 deleterious(0.04) possibly_damaging(0.602) TCGA-EE-A3J5-06 14 24647299 24647299 G A REC8 Silent p.R288R 0.05 TCGA-EE-A3J5-06 14 24718746 24718746 C T TGM1 Missense_Mutation p.D743N 0.57 tolerated(0.12) benign(0.01) TCGA-EE-A3J5-06 14 24845926 24845926 C T NFATC4 Missense_Mutation p.S891F 0.07 deleterious_low_confidence(0.03) benign(0.122) TCGA-EE-A3J5-06 14 24885171 24885171 C T NYNRIN Missense_Mutation p.P1406S 0.46 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-EE-A3J5-06 14 29237430 29237430 C T FOXG1 Silent p.S315S 0.54 TCGA-EE-A3J5-06 14 31604173 31604173 A G HECTD1 Silent p.S1161S 0.57 TCGA-EE-A3J5-06 14 33292869 33292869 G A AKAP6 Silent p.K1950K 0.58 TCGA-EE-A3J5-06 14 33293995 33293995 C T AKAP6 3'UTR 0.08 TCGA-EE-A3J5-06 14 34269129 34269129 A G NPAS3 Missense_Mutation p.N539S 0.29 tolerated(0.82) benign(0) TCGA-EE-A3J5-06 14 39717191 39717191 G A MIA2 Silent p.Q471Q 0.06 TCGA-EE-A3J5-06 14 47504474 47504474 G A MDGA2 Missense_Mutation p.S520L 0.48 deleterious(0) possibly_damaging(0.805) TCGA-EE-A3J5-06 14 51467517 51467517 C T TRIM9 Missense_Mutation p.E450K 0.50 tolerated(0.5) benign(0.021) TCGA-EE-A3J5-06 14 58604911 58604911 G A C14orf37 Missense_Mutation p.S389L 0.05 tolerated(0.16) possibly_damaging(0.504) TCGA-EE-A3J5-06 14 61180921 61180921 C T SIX4 Missense_Mutation p.G517D 0.51 deleterious(0.01) benign(0.052) TCGA-EE-A3J5-06 14 62463260 62463260 G T SYT16 Missense_Mutation p.V175F 0.53 deleterious(0.01) possibly_damaging(0.703) TCGA-EE-A3J5-06 14 63269224 63269224 G A KCNH5 Missense_Mutation p.P549S 0.54 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A3J5-06 14 64593101 64593101 C T SYNE2 Silent p.F4537F 0.54 TCGA-EE-A3J5-06 14 64630183 64630183 C T SYNE2 Nonsense_Mutation p.R5455* 0.10 TCGA-EE-A3J5-06 14 64716295 64716295 G A ESR2 Silent p.L398L 0.54 TCGA-EE-A3J5-06 14 65210329 65210329 G A PLEKHG3 Missense_Mutation p.E1134K 0.35 tolerated(0.05) possibly_damaging(0.46) TCGA-EE-A3J5-06 14 65242052 65242052 C T SPTB Missense_Mutation p.V1545M 0.57 tolerated(0.09) possibly_damaging(0.492) TCGA-EE-A3J5-06 14 70634273 70634273 C T SLC8A3 Silent p.G289G 0.08 TCGA-EE-A3J5-06 14 71543097 71543097 C T PCNX Silent p.Y1766Y 0.07 TCGA-EE-A3J5-06 14 72137902 72137902 C T SIPA1L1 Silent p.F774F 0.11 TCGA-EE-A3J5-06 14 73137836 73137836 C T DPF3 3'UTR 0.50 TCGA-EE-A3J5-06 14 73989577 73989577 C T HEATR4 Missense_Mutation p.D94N 0.47 tolerated(0.15) benign(0.086) TCGA-EE-A3J5-06 14 74995270 74995270 C T LTBP2 Missense_Mutation p.G762R 0.50 tolerated(0.62) benign(0.009) TCGA-EE-A3J5-06 14 75330535 75330535 C T PROX2 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.447) TCGA-EE-A3J5-06 14 76488726 76488726 G A IFT43 Silent p.V68V 0.04 TCGA-EE-A3J5-06 14 77236309 77236309 C T VASH1 Missense_Mutation p.P105S 0.48 tolerated(0.41) probably_damaging(0.998) TCGA-EE-A3J5-06 14 78392222 78392222 C T ADCK1 Missense_Mutation p.P375L 0.51 tolerated(0.08) possibly_damaging(0.676) TCGA-EE-A3J5-06 14 79111610 79111610 C T NRXN3 5'UTR 0.48 TCGA-EE-A3J5-06 14 79175782 79175782 G A NRXN3 Missense_Mutation p.G109S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 14 79434647 79434647 G A NRXN3 Missense_Mutation p.D661N 0.48 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3J5-06 14 80971341 80971341 C T CEP128 Missense_Mutation p.G1032D 0.46 tolerated(0.17) benign(0.009) TCGA-EE-A3J5-06 14 80971342 80971342 C T CEP128 Missense_Mutation p.G1032S 0.46 tolerated(1) benign(0.009) TCGA-EE-A3J5-06 14 81244351 81244351 G A CEP128 Missense_Mutation p.R751C 0.49 tolerated(0.13) benign(0.016) TCGA-EE-A3J5-06 14 81969214 81969214 G A SEL1L Missense_Mutation p.L210F 0.09 tolerated(0.2) benign(0.232) TCGA-EE-A3J5-06 14 88892634 88892634 C T SPATA7 Missense_Mutation p.S144L 0.10 tolerated(0.1) benign(0.008) TCGA-EE-A3J5-06 14 88892806 88892806 A G SPATA7 Silent p.R201R 0.47 TCGA-EE-A3J5-06 14 92189528 92189528 G A CATSPERB Silent p.I58I 0.11 TCGA-EE-A3J5-06 14 92403441 92403441 G A FBLN5 Nonsense_Mutation p.R77* 0.63 TCGA-EE-A3J5-06 14 94722890 94722890 G A PPP4R4 Silent p.R653R 0.17 TCGA-EE-A3J5-06 14 95080709 95080709 C T SERPINA3 5'UTR 0.09 TCGA-EE-A3J5-06 14 96706956 96706956 G A BDKRB2 Silent p.G97G 0.50 TCGA-EE-A3J5-06 15 20874966 20874966 C T NBEAP1 Intron 0.25 TCGA-EE-A3J5-06 15 20874967 20874967 C T NBEAP1 Splice_Site 0.25 TCGA-EE-A3J5-06 15 22369419 22369419 C T OR4M2 Missense_Mutation p.P282S 0.18 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J5-06 15 22849078 22849078 C - TUBGCP5 Frame_Shift_Del p.F375Lfs*19 0.26 TCGA-EE-A3J5-06 15 23052734 23052734 G A NIPA1 Silent p.L113L 0.37 TCGA-EE-A3J5-06 15 23889360 23889360 G A MAGEL2 Missense_Mutation p.P574L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 15 23890549 23890549 C T MAGEL2 Missense_Mutation p.E178K 0.40 deleterious(0.01) possibly_damaging(0.494) TCGA-EE-A3J5-06 15 25227291 25227291 A C SNRPN 3'Flank 0.27 TCGA-EE-A3J5-06 15 25315655 25315655 C T SNORD116-8 RNA 0.36 TCGA-EE-A3J5-06 15 25448428 25448428 C T SNORD115-18 RNA 0.31 TCGA-EE-A3J5-06 15 25463871 25463871 G A SNORD115-27 5'Flank 0.31 TCGA-EE-A3J5-06 15 25465727 25465727 G A SNORD115-28 5'Flank 0.32 TCGA-EE-A3J5-06 15 25616661 25616661 A T UBE3A Missense_Mutation p.N223K 0.38 tolerated(0.9) benign(0.023) TCGA-EE-A3J5-06 15 26107965 26107965 G A ATP10A Silent p.F93F 0.35 TCGA-EE-A3J5-06 15 29092295 29092295 C T GOLGA6L7P RNA 0.23 TCGA-EE-A3J5-06 15 31330321 31330321 G A TRPM1 Missense_Mutation p.R806C 0.48 deleterious(0) possibly_damaging(0.816) TCGA-EE-A3J5-06 15 31332543 31332543 G A TRPM1 Silent p.F715F 0.22 TCGA-EE-A3J5-06 15 34396502 34396502 C T PGBD4 3'UTR 0.37 TCGA-EE-A3J5-06 15 34455820 34455820 G A KATNBL1 Missense_Mutation p.H20Y 0.38 tolerated(0.64) benign(0.259) TCGA-EE-A3J5-06 15 38234401 38234401 G A TMCO5A Missense_Mutation p.E172K 0.31 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 15 39874481 39874481 C T THBS1 Missense_Mutation p.P52L 0.40 tolerated_low_confidence(0.11) benign(0.016) TCGA-EE-A3J5-06 15 40099353 40099353 G A GPR176 Silent p.V93V 0.33 TCGA-EE-A3J5-06 15 40568379 40568379 C T PAK6 3'UTR 0.33 TCGA-EE-A3J5-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.36 deleterious_low_confidence(0.01) benign(0.118) TCGA-EE-A3J5-06 15 42193053 42193053 C T EHD4 Silent p.K472K 0.32 TCGA-EE-A3J5-06 15 42579886 42579886 C T GANC Intron 0.37 TCGA-EE-A3J5-06 15 43892181 43892181 C T STRC Missense_Mutation p.G1739E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 15 44084504 44084504 G A SERF2 5'Flank 0.36 TCGA-EE-A3J5-06 15 44166049 44166049 C T FRMD5 3'UTR 0.33 TCGA-EE-A3J5-06 15 44816404 44816404 A G CTDSPL2 3'UTR 0.38 TCGA-EE-A3J5-06 15 44816405 44816405 G A CTDSPL2 3'UTR 0.37 TCGA-EE-A3J5-06 15 45050926 45050926 G A TRIM69 Silent p.G229G 0.40 TCGA-EE-A3J5-06 15 48719898 48719898 G A FBN1 Missense_Mutation p.P2357L 0.32 benign(0.006) TCGA-EE-A3J5-06 15 50570800 50570800 A T GABPB1 3'UTR 0.31 TCGA-EE-A3J5-06 15 50570801 50570801 G A GABPB1 3'UTR 0.29 TCGA-EE-A3J5-06 15 51040950 51040950 C T SPPL2A Missense_Mutation p.E99K 0.31 deleterious(0.03) possibly_damaging(0.861) TCGA-EE-A3J5-06 15 51507376 51507376 C T CYP19A1 Silent p.L304L 0.34 TCGA-EE-A3J5-06 15 52500759 52500759 C T MYO5C Missense_Mutation p.G1460R 0.36 deleterious(0.03) possibly_damaging(0.45) TCGA-EE-A3J5-06 15 55790615 55790615 C T DYX1C1 5'UTR 0.38 TCGA-EE-A3J5-06 15 55931935 55931935 C T PRTG Silent p.R743R 0.34 TCGA-EE-A3J5-06 15 55964805 55964805 C T PRTG Missense_Mutation p.E627K 0.33 tolerated(0.09) probably_damaging(0.98) TCGA-EE-A3J5-06 15 57809164 57809164 G A CGNL1 Missense_Mutation p.E864K 0.35 deleterious(0.02) benign(0.184) TCGA-EE-A3J5-06 15 57838293 57838293 C T CGNL1 Missense_Mutation p.A1210V 0.28 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 15 57918077 57918077 C T GCOM1 Missense_Mutation p.S171F 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3J5-06 15 63547712 63547712 A G RAB8B Missense_Mutation p.M85V 0.35 tolerated(0.07) probably_damaging(0.978) TCGA-EE-A3J5-06 15 65370324 65370324 G A KBTBD13 Missense_Mutation p.G391R 0.34 deleterious(0) probably_damaging(0.96) TCGA-EE-A3J5-06 15 65491335 65491335 C T CILP Missense_Mutation p.G430E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 15 65994202 65994202 G A DENND4A Silent p.L819L 0.28 TCGA-EE-A3J5-06 15 66727557 66727557 C T MAP2K1 Silent p.G91G 0.38 TCGA-EE-A3J5-06 15 68624324 68624324 G A ITGA11 Missense_Mutation p.S548L 0.41 deleterious(0.02) benign(0.063) TCGA-EE-A3J5-06 15 71174914 71174914 C T THAP10 Missense_Mutation p.R218K 0.36 tolerated_low_confidence(0.06) benign(0.332) TCGA-EE-A3J5-06 15 72057395 72057395 G A THSD4 Missense_Mutation p.E876K 0.31 deleterious(0.03) benign(0.105) TCGA-EE-A3J5-06 15 72119127 72119127 G A MYO9A Silent p.L2481L 0.34 TCGA-EE-A3J5-06 15 72119128 72119128 G A MYO9A Silent p.F2480F 0.33 TCGA-EE-A3J5-06 15 72968449 72968449 G A HIGD2B Silent p.T89T 0.40 TCGA-EE-A3J5-06 15 72968450 72968450 G A HIGD2B Missense_Mutation p.T89I 0.39 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 15 72968672 72968672 G A HIGD2B Missense_Mutation p.S15L 0.64 tolerated(0.87) benign(0.001) TCGA-EE-A3J5-06 15 73593698 73593698 C T NEO1 Missense_Mutation p.S1401F 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 15 74328055 74328055 C T PML Intron 0.34 TCGA-EE-A3J5-06 15 75932124 75932124 G A IMP3 Missense_Mutation p.A129V 0.34 deleterious(0.03) benign(0.158) TCGA-EE-A3J5-06 15 76075368 76075368 G A RN7SL319P 5'Flank 0.36 TCGA-EE-A3J5-06 15 76075369 76075369 G A RN7SL319P 5'Flank 0.35 TCGA-EE-A3J5-06 15 79296452 79296452 G A RASGRF1 Missense_Mutation p.S730F 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 15 81176591 81176591 C T KIAA1199 Silent p.I231I 0.38 TCGA-EE-A3J5-06 15 81624960 81624960 C T TMC3 Missense_Mutation p.E1035K 0.27 deleterious_low_confidence(0.04) benign(0.052) TCGA-EE-A3J5-06 15 81633859 81633859 C T TMC3 Nonsense_Mutation p.W572* 0.35 TCGA-EE-A3J5-06 15 83222244 83222244 C T CPEB1 Missense_Mutation p.G346S 0.27 tolerated(0.12) benign(0.329) TCGA-EE-A3J5-06 15 83334282 83334282 G A AP3B2 Missense_Mutation p.A633V 0.28 tolerated(0.18) benign(0.032) TCGA-EE-A3J5-06 15 83932100 83932100 C A BNC1 Nonsense_Mutation p.E635* 0.29 TCGA-EE-A3J5-06 15 83933099 83933099 C T BNC1 Missense_Mutation p.D302N 0.29 tolerated(0.24) benign(0.11) TCGA-EE-A3J5-06 15 84506958 84506958 C T ADAMTSL3 Missense_Mutation p.P240S 0.46 tolerated(0.2) benign(0.066) TCGA-EE-A3J5-06 15 85383804 85383804 G A ALPK3 Missense_Mutation p.E634K 0.25 tolerated_low_confidence(0.07) benign(0.004) TCGA-EE-A3J5-06 15 87066061 87066061 G A AGBL1 Missense_Mutation p.G813E 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 15 88420137 88420137 G A NTRK3 3'UTR 0.36 TCGA-EE-A3J5-06 15 88483884 88483884 C A NTRK3 Silent p.P562P 0.31 TCGA-EE-A3J5-06 15 88669599 88669599 G A NTRK3 Silent p.S433S 0.32 TCGA-EE-A3J5-06 15 89198787 89198787 G A ISG20 3'UTR 0.38 TCGA-EE-A3J5-06 15 89385095 89385095 G A ACAN Missense_Mutation p.E252K 0.29 tolerated(0.08) unknown(0) TCGA-EE-A3J5-06 15 89400951 89400951 G A ACAN Missense_Mutation p.G1712E 0.29 tolerated(0.12) probably_damaging(1) TCGA-EE-A3J5-06 15 90335399 90335399 G A ANPEP Silent p.I840I 0.36 TCGA-EE-A3J5-06 15 91172683 91172683 T C CRTC3 Silent p.L395L 0.39 TCGA-EE-A3J5-06 15 93499745 93499745 G A CHD2 Silent p.L622L 0.41 TCGA-EE-A3J5-06 15 94884127 94884127 G A MCTP2 Missense_Mutation p.V315I 0.28 tolerated(0.36) benign(0.005) TCGA-EE-A3J5-06 15 99671776 99671776 C T SYNM Missense_Mutation p.R1070W 0.24 deleterious(0) probably_damaging(0.949) TCGA-EE-A3J5-06 16 10524907 10524907 G A ATF7IP2 Missense_Mutation p.D144N 0.21 tolerated(0.21) benign(0.053) TCGA-EE-A3J5-06 16 10721542 10721542 G C TEKT5 Missense_Mutation p.H452Q 0.47 tolerated(0.11) possibly_damaging(0.597) TCGA-EE-A3J5-06 16 11051708 11051708 C A CLEC16A Silent p.T50T 0.17 TCGA-EE-A3J5-06 16 11785865 11785865 C T TXNDC11 Missense_Mutation p.R394Q 0.42 tolerated(0.32) benign(0.016) TCGA-EE-A3J5-06 16 1271985 1271985 G A TPSG1 Missense_Mutation p.R257C 0.54 deleterious(0) probably_damaging(0.928) TCGA-EE-A3J5-06 16 15711387 15711387 C T KIAA0430 Missense_Mutation p.G909E 0.30 tolerated(0.25) probably_damaging(1) TCGA-EE-A3J5-06 16 1867245 1867245 C T HAGH Missense_Mutation p.G190E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 1867246 1867246 C T HAGH Missense_Mutation p.G190R 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 19073159 19073159 G A TMC7 Silent p.R722R 0.31 TCGA-EE-A3J5-06 16 19468019 19468019 G A TMC5 Intron 0.41 TCGA-EE-A3J5-06 16 19485449 19485449 C T TMC5 Silent p.F647F 0.24 TCGA-EE-A3J5-06 16 19490827 19490827 C T TMC5 Silent p.S748S 0.42 TCGA-EE-A3J5-06 16 19498649 19498649 G A TMC5 Splice_Site p.X858_splice 0.20 TCGA-EE-A3J5-06 16 20043818 20043818 C T GPR139 Missense_Mutation p.D101N 0.35 tolerated(0.53) benign(0.003) TCGA-EE-A3J5-06 16 20043849 20043849 G A GPR139 Silent p.F90F 0.27 TCGA-EE-A3J5-06 16 20329515 20329515 G A GP2 Silent p.I418I 0.15 TCGA-EE-A3J5-06 16 20371928 20371928 C T PDILT Missense_Mutation p.E490K 0.19 tolerated(0.05) possibly_damaging(0.529) TCGA-EE-A3J5-06 16 20429495 20429495 G A ACSM5 Missense_Mutation p.G107R 0.28 tolerated(0.14) benign(0.005) TCGA-EE-A3J5-06 16 20781555 20781555 C A ACSM3 Missense_Mutation p.Q67K 0.47 tolerated(0.88) benign(0.001) TCGA-EE-A3J5-06 16 20966157 20966157 C T DNAH3 Silent p.E3683E 0.15 TCGA-EE-A3J5-06 16 2162876 2162876 G A PKD1 Missense_Mutation p.S1025F 0.07 benign(0.178) TCGA-EE-A3J5-06 16 21991911 21991911 G C UQCRC2 Missense_Mutation p.E390Q 0.15 tolerated(0.07) benign(0.002) TCGA-EE-A3J5-06 16 2223270 2223270 G A TRAF7 Silent p.T294T 0.52 TCGA-EE-A3J5-06 16 23226449 23226449 C T SCNN1G Silent p.L537L 0.29 TCGA-EE-A3J5-06 16 23366772 23366772 C T SCNN1B Silent p.I246I 0.42 TCGA-EE-A3J5-06 16 2369634 2369634 G A ABCA3 Missense_Mutation p.T274I 0.59 tolerated(0.38) benign(0.021) TCGA-EE-A3J5-06 16 23718360 23718360 G A ERN2 Missense_Mutation p.P164L 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 16 2376113 2376113 G A ABCA3 Missense_Mutation p.P73S 0.07 tolerated(0.22) benign(0.026) TCGA-EE-A3J5-06 16 24881255 24881255 A G SLC5A11 Missense_Mutation p.S81G 0.16 deleterious(0) possibly_damaging(0.688) TCGA-EE-A3J5-06 16 25251334 25251334 G A ZKSCAN2 Nonsense_Mutation p.R903* 0.12 TCGA-EE-A3J5-06 16 26147315 26147315 G A HS3ST4 Missense_Mutation p.D373N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 16 27445715 27445715 G A IL21R Missense_Mutation p.V33I 0.12 tolerated(0.43) benign(0.027) TCGA-EE-A3J5-06 16 27448861 27448861 A C IL21R Silent p.R69R 0.39 TCGA-EE-A3J5-06 16 27448862 27448862 G T IL21R Missense_Mutation p.R69M 0.39 deleterious(0.03) possibly_damaging(0.475) TCGA-EE-A3J5-06 16 27457401 27457401 G A IL21R Missense_Mutation p.D287N 0.30 tolerated(0.23) benign(0.078) TCGA-EE-A3J5-06 16 2757314 2757314 G A KCTD5 Missense_Mutation p.G231S 0.08 deleterious(0.04) benign(0.391) TCGA-EE-A3J5-06 16 2822062 2822063 GG A TCEB2 Frame_Shift_Del p.P96Rfs*7 0.36 TCGA-EE-A3J5-06 16 28499933 28499933 G A CLN3 Silent p.D91D 0.43 TCGA-EE-A3J5-06 16 28507545 28507545 C T APOBR Missense_Mutation p.P395S 0.32 tolerated(0.73) possibly_damaging(0.803) TCGA-EE-A3J5-06 16 28509498 28509498 C T APOBR Missense_Mutation p.R1018C 0.62 deleterious(0) unknown(0) TCGA-EE-A3J5-06 16 28620125 28620125 C G SULT1A1 Missense_Mutation p.V18L 0.09 deleterious(0.04) benign(0.101) TCGA-EE-A3J5-06 16 28854470 28854470 C T TUFM Splice_Site p.X399_splice 0.18 TCGA-EE-A3J5-06 16 28906196 28906196 C T ATP2A1 Silent p.T447T 0.41 TCGA-EE-A3J5-06 16 28906197 28906197 C T ATP2A1 Silent p.L448L 0.43 TCGA-EE-A3J5-06 16 2987314 2987314 C T FLYWCH1 Missense_Mutation p.P568L 0.67 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3J5-06 16 30020339 30020339 C T DOC2A Missense_Mutation p.D169N 0.16 deleterious(0) probably_damaging(0.94) TCGA-EE-A3J5-06 16 30198725 30198725 G A CORO1A Missense_Mutation p.G220E 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 30500637 30500637 G - ITGAL Frame_Shift_Del p.A382Qfs*14 0.14 TCGA-EE-A3J5-06 16 3100450 3100450 G A MMP25 Silent p.L188L 0.61 TCGA-EE-A3J5-06 16 31332896 31332896 G A ITGAM Silent p.E651E 0.21 TCGA-EE-A3J5-06 16 3168911 3168911 C T ZNF205 Missense_Mutation p.P164S 0.52 tolerated(0.08) benign(0.4) TCGA-EE-A3J5-06 16 3297131 3297131 A G MEFV Missense_Mutation p.V491A 0.06 deleterious(0) benign(0.248) TCGA-EE-A3J5-06 16 3562382 3562382 G A CLUAP1 Splice_Site p.X134_splice 0.53 TCGA-EE-A3J5-06 16 3604304 3604304 C T NLRC3 Missense_Mutation p.D783N 0.08 deleterious(0.03) possibly_damaging(0.902) TCGA-EE-A3J5-06 16 48234384 48234384 C T ABCC11 Missense_Mutation p.E629K 0.26 deleterious(0) possibly_damaging(0.763) TCGA-EE-A3J5-06 16 4945320 4945320 C T PPL Missense_Mutation p.R395Q 0.15 deleterious(0) probably_damaging(0.938) TCGA-EE-A3J5-06 16 49669702 49669702 G A ZNF423 Missense_Mutation p.R1121C 0.23 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J5-06 16 49671547 49671547 G C ZNF423 Missense_Mutation p.P506A 0.37 tolerated(0.33) benign(0.002) TCGA-EE-A3J5-06 16 50326721 50326721 C T ADCY7 Silent p.I224I 0.21 TCGA-EE-A3J5-06 16 50744602 50744602 G A NOD2 Nonsense_Mutation p.W260* 0.29 TCGA-EE-A3J5-06 16 5115762 5115762 G A C16orf89 Silent p.L50L 0.20 TCGA-EE-A3J5-06 16 51173698 51173698 G A SALL1 Missense_Mutation p.S812F 0.40 tolerated(0.07) possibly_damaging(0.898) TCGA-EE-A3J5-06 16 51175914 51175914 G A SALL1 Silent p.I73I 0.22 TCGA-EE-A3J5-06 16 52473800 52473800 G A TOX3 Silent p.L356L 0.22 TCGA-EE-A3J5-06 16 53404654 53404654 C T RP11-44F14.1 RNA 0.29 TCGA-EE-A3J5-06 16 55562455 55562455 T C LPCAT2 Silent p.L160L 0.41 TCGA-EE-A3J5-06 16 57073707 57073707 C T NLRC5 Missense_Mutation p.T939I 0.43 tolerated(0.06) benign(0.285) TCGA-EE-A3J5-06 16 57552640 57552640 T G CCDC102A Missense_Mutation p.K312T 0.43 tolerated(0.05) probably_damaging(0.969) TCGA-EE-A3J5-06 16 57761217 57761217 G A CCDC135 Missense_Mutation p.E698K 0.20 tolerated(0.27) benign(0.272) TCGA-EE-A3J5-06 16 58001157 58001157 G A CNGB1 Missense_Mutation p.P12S 0.46 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EE-A3J5-06 16 58713876 58713876 G A SLC38A7 Missense_Mutation p.S52F 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 618306 618306 G A NHLRC4 Missense_Mutation p.E87K 0.60 tolerated(0.38) benign(0.003) TCGA-EE-A3J5-06 16 61851436 61851436 G A CDH8 Silent p.S408S 0.40 TCGA-EE-A3J5-06 16 66424473 66424473 G A CDH5 Missense_Mutation p.G317S 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J5-06 16 66436827 66436827 G A CDH5 Missense_Mutation p.E704K 0.67 deleterious(0.01) benign(0.159) TCGA-EE-A3J5-06 16 66785211 66785211 G A DYNC1LI2 Missense_Mutation p.S49F 0.41 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A3J5-06 16 66966 66966 G A WASH4P Silent p.L224L 0.14 TCGA-EE-A3J5-06 16 67228832 67228832 C T E2F4 Missense_Mutation p.P253S 0.43 tolerated(0.28) benign(0.001) TCGA-EE-A3J5-06 16 67237733 67237733 C T ELMO3 Missense_Mutation p.P759S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 67242286 67242286 G A LRRC29 Missense_Mutation p.L72F 0.53 tolerated(0.14) probably_damaging(0.931) TCGA-EE-A3J5-06 16 67267864 67267865 CC T FHOD1 Frame_Shift_Del p.G581Kfs*47 0.42 TCGA-EE-A3J5-06 16 675940 675940 G T RAB40C Silent p.L128L 0.45 TCGA-EE-A3J5-06 16 67681469 67681469 G A RLTPR Missense_Mutation p.E279K 0.30 tolerated(0.12) benign(0.032) TCGA-EE-A3J5-06 16 67697082 67697082 G A ENKD1 Silent p.F341F 0.22 TCGA-EE-A3J5-06 16 69385509 69385509 G A TMED6 Missense_Mutation p.P50S 0.19 tolerated(0.16) benign(0.009) TCGA-EE-A3J5-06 16 69959148 69959148 A G WWP2 Intron 0.75 TCGA-EE-A3J5-06 16 70590141 70590141 G A SF3B3 Missense_Mutation p.M590I 0.18 tolerated(0.14) benign(0.158) TCGA-EE-A3J5-06 16 70891662 70891662 C T HYDIN Missense_Mutation p.E4081K 0.17 benign(0.001) TCGA-EE-A3J5-06 16 70896078 70896078 C T HYDIN Missense_Mutation p.E3884K 0.12 benign(0.018) TCGA-EE-A3J5-06 16 70926412 70926412 C T HYDIN Missense_Mutation p.G3090E 0.30 probably_damaging(0.988) TCGA-EE-A3J5-06 16 70993644 70993644 G A HYDIN Silent p.I2016I 0.37 TCGA-EE-A3J5-06 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.21 probably_damaging(0.953) TCGA-EE-A3J5-06 16 72138966 72138966 C T DHX38 Missense_Mutation p.S731F 0.11 deleterious(0) benign(0.212) TCGA-EE-A3J5-06 16 72184530 72184530 C T PMFBP1 Missense_Mutation p.E205K 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 16 72822425 72822425 T A ZFHX3 Missense_Mutation p.K3250N 0.25 unknown(0) TCGA-EE-A3J5-06 16 74922121 74922121 G A WDR59 Silent p.P764P 0.25 TCGA-EE-A3J5-06 16 74942837 74942837 G A WDR59 Missense_Mutation p.R561W 0.35 deleterious(0) possibly_damaging(0.506) TCGA-EE-A3J5-06 16 7568264 7568264 C T RBFOX1 Missense_Mutation p.P68L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 16 78064358 78064358 A C CLEC3A Missense_Mutation p.T81P 0.23 deleterious(0.01) possibly_damaging(0.832) TCGA-EE-A3J5-06 16 81134757 81134757 G A GCSH 5'Flank 0.19 TCGA-EE-A3J5-06 16 81232296 81232296 C T PKD1L2 Missense_Mutation p.G33E 0.19 tolerated(0.19) possibly_damaging(0.604) TCGA-EE-A3J5-06 16 81293407 81293407 C T BCMO1 Missense_Mutation p.S107F 0.18 tolerated(0.1) benign(0.049) TCGA-EE-A3J5-06 16 84778389 84778389 C T USP10 Missense_Mutation p.P101L 0.37 tolerated_low_confidence(0.29) benign(0.002) TCGA-EE-A3J5-06 16 87678093 87678093 C T JPH3 Silent p.S204S 0.21 TCGA-EE-A3J5-06 16 88719738 88719738 G A MVD Silent p.P364P 0.07 TCGA-EE-A3J5-06 16 88967947 88967947 C T CBFA2T3 Missense_Mutation p.G90E 0.18 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-EE-A3J5-06 16 89260232 89260232 C T CDH15 Missense_Mutation p.R688C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 16 89294610 89294610 C T ZNF778 Silent p.T610T 0.17 TCGA-EE-A3J5-06 16 89347874 89347874 G A ANKRD11 Silent p.S1692S 0.43 TCGA-EE-A3J5-06 16 89800407 89800407 G A ZNF276 Missense_Mutation p.D479N 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J5-06 16 9857534 9857534 C A GRIN2A Missense_Mutation p.Q1289H 0.04 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 10398588 10398588 G A MYH1 Missense_Mutation p.S1739F 0.57 deleterious(0.04) possibly_damaging(0.466) TCGA-EE-A3J5-06 17 11648245 11648245 G A DNAH9 Silent p.K2081K 0.44 TCGA-EE-A3J5-06 17 12847413 12847413 G A ARHGAP44 Missense_Mutation p.G254E 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 17 12896136 12896136 C T ELAC2 Silent p.%3D 0.56 TCGA-EE-A3J5-06 17 13400005 13400005 C T HS3ST3A1 Missense_Mutation p.D244N 0.50 tolerated(0.42) possibly_damaging(0.754) TCGA-EE-A3J5-06 17 1368893 1368893 G A MYO1C 3'UTR 0.45 TCGA-EE-A3J5-06 17 1478904 1478904 G A SLC43A2 Silent p.F568F 0.53 TCGA-EE-A3J5-06 17 15510940 15510940 C T RP11-385D13.1 Missense_Mutation p.E704K 0.65 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A3J5-06 17 1585293 1585293 C T PRPF8 Silent p.R158R 0.50 TCGA-EE-A3J5-06 17 18030147 18030147 C T MYO15A Silent p.L1303L 0.62 TCGA-EE-A3J5-06 17 20796748 20796748 C T CCDC144NL Silent p.K124K 0.47 TCGA-EE-A3J5-06 17 27250966 27250966 G A PHF12 Nonsense_Mutation p.Q226* 0.39 TCGA-EE-A3J5-06 17 27493534 27493534 G A MYO18A Missense_Mutation p.S142F 0.56 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-EE-A3J5-06 17 28712022 28712022 A G CPD Silent p.G254G 0.55 TCGA-EE-A3J5-06 17 29654857 29654857 G A NF1 Missense_Mutation p.R1870Q 0.59 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J5-06 17 29654858 29654858 G A NF1 Splice_Site p.X1870_splice 0.60 TCGA-EE-A3J5-06 17 30226702 30226702 C T UTP6 Missense_Mutation p.R47K 0.26 tolerated(0.16) benign(0.402) TCGA-EE-A3J5-06 17 3195593 3195593 A G OR3A1 Missense_Mutation p.V95A 0.70 deleterious(0) benign(0.14) TCGA-EE-A3J5-06 17 33802297 33802297 G A SLFN12L Missense_Mutation p.P471L 0.42 tolerated(0.34) probably_damaging(0.994) TCGA-EE-A3J5-06 17 33966762 33966762 C T AP2B1 Missense_Mutation p.H474Y 0.37 deleterious(0.04) benign(0.206) TCGA-EE-A3J5-06 17 34079764 34079764 C T GAS2L2 Missense_Mutation p.E36K 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 34233603 34233603 G A AC015849.16 RNA 0.28 TCGA-EE-A3J5-06 17 35468504 35468504 C T ACACA Missense_Mutation p.R2176Q 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-EE-A3J5-06 17 35600415 35600415 C T ACACA Missense_Mutation p.E935K 0.33 deleterious(0.01) benign(0.007) TCGA-EE-A3J5-06 17 3585257 3585257 C T P2RX5 Missense_Mutation p.D333N 0.67 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J5-06 17 36288274 36288274 G A TBC1D3F Missense_Mutation p.M120I 0.07 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 17 3628901 3628901 G A GSG2 Missense_Mutation p.G558R 0.62 deleterious(0.04) possibly_damaging(0.64) TCGA-EE-A3J5-06 17 36357240 36357240 G A RP11-1407O15.2 Missense_Mutation p.S338F 0.18 TCGA-EE-A3J5-06 17 36487162 36487162 C T GPR179 Missense_Mutation p.G764R 0.25 tolerated(0.25) benign(0.025) TCGA-EE-A3J5-06 17 3656664 3656664 C T ITGAE Missense_Mutation p.D530N 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 37187418 37187418 C T CTD-2206N4.2 5'Flank 0.44 TCGA-EE-A3J5-06 17 37209131 37209131 T C CTD-2206N4.4 5'Flank 0.27 TCGA-EE-A3J5-06 17 37265618 37265618 G A PLXDC1 Silent p.S94S 0.26 TCGA-EE-A3J5-06 17 37358611 37358611 C T RPL19 Missense_Mutation p.R52C 0.35 deleterious(0.05) benign(0.192) TCGA-EE-A3J5-06 17 37922608 37922608 G A IKZF3 Missense_Mutation p.P322L 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 17 39551755 39551755 C T KRT31 Missense_Mutation p.E237K 0.29 deleterious(0) possibly_damaging(0.582) TCGA-EE-A3J5-06 17 39551756 39551756 C T KRT31 Silent p.V236V 0.30 TCGA-EE-A3J5-06 17 39724825 39724825 C T KRT9 Missense_Mutation p.E369K 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-EE-A3J5-06 17 39724826 39724826 C T KRT9 Silent p.K368K 0.30 TCGA-EE-A3J5-06 17 39921212 39921212 G A JUP Silent p.S339S 0.32 TCGA-EE-A3J5-06 17 39994174 39994174 C T KLHL10 5'UTR 0.36 TCGA-EE-A3J5-06 17 39994175 39994175 C T KLHL10 5'UTR 0.36 TCGA-EE-A3J5-06 17 40956392 40956392 G A CNTD1 Missense_Mutation p.S132N 0.31 tolerated(0.09) probably_damaging(1) TCGA-EE-A3J5-06 17 41003568 41003568 G A AOC3 Missense_Mutation p.A70T 0.37 tolerated(0.15) probably_damaging(0.992) TCGA-EE-A3J5-06 17 41019659 41019659 G A AOC4P RNA 0.31 TCGA-EE-A3J5-06 17 41059602 41059602 C T G6PC Missense_Mutation p.L135F 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3J5-06 17 42335549 42335549 C T SLC4A1 Splice_Site p.X363_splice 0.33 TCGA-EE-A3J5-06 17 42338150 42338150 C T SLC4A1 Missense_Mutation p.E68K 0.33 tolerated(0.38) benign(0) TCGA-EE-A3J5-06 17 42392170 42392170 G A RUNDC3A Missense_Mutation p.G176R 0.29 deleterious(0) probably_damaging(0.96) TCGA-EE-A3J5-06 17 42392171 42392171 G A RUNDC3A Missense_Mutation p.G176E 0.29 deleterious(0.03) benign(0.367) TCGA-EE-A3J5-06 17 42475591 42475591 G A GPATCH8 Missense_Mutation p.P1285L 0.36 tolerated(0.16) unknown(0) TCGA-EE-A3J5-06 17 43246726 43246726 C A HEXIM2 Silent p.P137P 0.24 TCGA-EE-A3J5-06 17 43480185 43480185 C T ARHGAP27 Splice_Site p.X206_splice 0.25 TCGA-EE-A3J5-06 17 44626249 44626249 G A LRRC37A2 Silent p.L1248L 0.32 TCGA-EE-A3J5-06 17 4463817 4463817 G A GGT6 5'UTR 0.48 TCGA-EE-A3J5-06 17 4463818 4463818 G A GGT6 5'UTR 0.50 TCGA-EE-A3J5-06 17 4536586 4536586 G A ALOX15 Missense_Mutation p.H425Y 0.62 deleterious(0.04) probably_damaging(1) TCGA-EE-A3J5-06 17 45368447 45368447 G A ITGB3 Missense_Mutation p.G418E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 45681379 45681379 G T NPEPPS Silent p.V613V 0.39 TCGA-EE-A3J5-06 17 4578167 4578167 G A PELP1 Silent p.A453A 0.58 TCGA-EE-A3J5-06 17 46423311 46423311 G A SKAP1 Missense_Mutation p.S79F 0.38 tolerated(0.05) benign(0.006) TCGA-EE-A3J5-06 17 46628070 46628070 A - HOXB3 Frame_Shift_Del p.Y308Tfs*121 0.20 TCGA-EE-A3J5-06 17 46629704 46629704 C T HOXB3 Missense_Mutation p.G45S 0.58 tolerated(1) benign(0.007) TCGA-EE-A3J5-06 17 47230163 47230163 G A B4GALNT2 Missense_Mutation p.E179K 0.25 tolerated(0.31) benign(0.04) TCGA-EE-A3J5-06 17 48270171 48270171 G A COL1A1 Missense_Mutation p.P621L 0.21 unknown(0) TCGA-EE-A3J5-06 17 48628957 48628957 C T SPATA20 Silent p.F554F 0.26 TCGA-EE-A3J5-06 17 53150371 53150371 C T STXBP4 Silent p.I374I 0.31 TCGA-EE-A3J5-06 17 54912183 54912183 G C DGKE Silent p.P9P 0.21 TCGA-EE-A3J5-06 17 54923092 54923092 C T DGKE Silent p.I222I 0.54 TCGA-EE-A3J5-06 17 56350878 56350878 T C MPO Silent p.Q506Q 0.52 TCGA-EE-A3J5-06 17 56573512 56573512 C T MTMR4 Missense_Mutation p.G664E 0.45 tolerated(0.4) benign(0.005) TCGA-EE-A3J5-06 17 56581115 56581115 A G MTMR4 Missense_Mutation p.S601P 0.26 tolerated(0.5) probably_damaging(0.934) TCGA-EE-A3J5-06 17 56621276 56621276 C T C17orf47 Missense_Mutation p.G91E 0.54 deleterious(0.03) benign(0.019) TCGA-EE-A3J5-06 17 57287386 57287386 G A SMG8 5'UTR 0.44 TCGA-EE-A3J5-06 17 57292291 57292291 C T SMG8 Silent p.F968F 0.42 TCGA-EE-A3J5-06 17 58539383 58539383 A G APPBP2 Silent p.L268L 0.45 TCGA-EE-A3J5-06 17 59668335 59668335 C T NACA2 Silent p.Q69Q 0.26 TCGA-EE-A3J5-06 17 60342489 60342489 G A TBC1D3P2 3'Flank 0.17 TCGA-EE-A3J5-06 17 60493449 60493449 G A EFCAB3 Missense_Mutation p.G411E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 60754833 60754833 C T MRC2 Missense_Mutation p.R680W 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 17 60779115 60779115 C T MARCH10 Silent p.S792S 0.26 TCGA-EE-A3J5-06 17 61498921 61498921 C T TANC2 Missense_Mutation p.H1860Y 0.22 tolerated_low_confidence(0.22) benign(0.097) TCGA-EE-A3J5-06 17 61601686 61601686 G A KCNH6 Missense_Mutation p.G88E 0.24 tolerated(0.16) possibly_damaging(0.849) TCGA-EE-A3J5-06 17 61949822 61949822 G A CSH2 Intron 0.25 TCGA-EE-A3J5-06 17 62018265 62018265 C T SCN4A Missense_Mutation p.E1793K 0.26 tolerated_low_confidence(0.29) benign(0.013) TCGA-EE-A3J5-06 17 62080920 62080920 C T C17orf72 3'Flank 0.53 TCGA-EE-A3J5-06 17 62290899 62290899 G A TEX2 Missense_Mutation p.R227W 0.30 deleterious(0) probably_damaging(0.914) TCGA-EE-A3J5-06 17 63221224 63221224 G A RGS9 Silent p.R504R 0.50 TCGA-EE-A3J5-06 17 64049913 64049913 C T CEP112 Missense_Mutation p.D387N 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J5-06 17 66416678 66416678 C T ARSG 3'UTR 0.31 TCGA-EE-A3J5-06 17 6683991 6683991 C T FBXO39 Silent p.I268I 0.58 TCGA-EE-A3J5-06 17 67249976 67249976 G A ABCA5 Nonsense_Mutation p.Q1427* 0.46 TCGA-EE-A3J5-06 17 70845917 70845917 G A SLC39A11 Nonsense_Mutation p.Q160* 0.22 TCGA-EE-A3J5-06 17 72305561 72305561 C T DNAI2 Intron 0.53 TCGA-EE-A3J5-06 17 72588510 72588510 A T C17orf77 Nonsense_Mutation p.K109* 0.49 TCGA-EE-A3J5-06 17 72700768 72700768 C A CD300LF Missense_Mutation p.R77S 0.50 tolerated(0.07) benign(0.034) TCGA-EE-A3J5-06 17 72916375 72916375 G A USH1G Silent p.L186L 0.25 TCGA-EE-A3J5-06 17 72959173 72959173 C T HID1 Missense_Mutation p.G131R 0.41 tolerated(0.2) benign(0.02) TCGA-EE-A3J5-06 17 73489155 73489155 C T KIAA0195 Silent p.I686I 0.20 TCGA-EE-A3J5-06 17 73625348 73625348 C T RECQL5 Missense_Mutation p.G719S 0.27 tolerated(1) benign(0.026) TCGA-EE-A3J5-06 17 7481807 7481807 G A EIF4A1 3'UTR 0.38 TCGA-EE-A3J5-06 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.58 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 17 76183458 76183458 G A AFMID Missense_Mutation p.D3N 0.26 deleterious_low_confidence(0.01) benign(0.326) TCGA-EE-A3J5-06 17 76455240 76455240 G C DNAH17 Missense_Mutation p.S3221C 0.46 probably_damaging(0.96) TCGA-EE-A3J5-06 17 76481750 76481750 C T DNAH17 Silent p.G2441G 0.28 TCGA-EE-A3J5-06 17 76501436 76501436 C T DNAH17 Missense_Mutation p.G1628E 0.35 benign(0.172) TCGA-EE-A3J5-06 17 76567792 76567792 G A DNAH17 Silent p.I204I 0.47 TCGA-EE-A3J5-06 17 7671250 7671250 C T DNAH2 Silent p.I1236I 0.59 TCGA-EE-A3J5-06 17 78323704 78323704 C T RNF213 Silent p.V3362V 0.45 TCGA-EE-A3J5-06 17 78346396 78346396 C T RNF213 Missense_Mutation p.L4205F 0.46 probably_damaging(0.999) TCGA-EE-A3J5-06 17 78970822 78970822 G A CHMP6 Missense_Mutation p.E122K 0.28 tolerated(0.08) benign(0.201) TCGA-EE-A3J5-06 17 79287665 79287665 G A TMEM105 Missense_Mutation p.S59F 0.36 deleterious_low_confidence(0.04) benign(0.045) TCGA-EE-A3J5-06 17 79514505 79514505 A G C17orf70 Missense_Mutation p.F535L 0.45 tolerated(0.15) benign(0.027) TCGA-EE-A3J5-06 17 80407105 80407105 G A C17orf62 Missense_Mutation p.T9I 0.25 deleterious(0) possibly_damaging(0.766) TCGA-EE-A3J5-06 17 81052115 81052115 C T METRNL Missense_Mutation p.P244L 0.43 tolerated(0.26) benign(0.283) TCGA-EE-A3J5-06 17 8814784 8814784 C T PIK3R5 Missense_Mutation p.E10K 0.55 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 17 902026 902026 C T TIMM22 Silent p.V82V 0.52 TCGA-EE-A3J5-06 17 9737125 9737125 T C GLP2R Missense_Mutation p.V64A 0.62 tolerated(0.22) benign(0.01) TCGA-EE-A3J5-06 17 9739711 9739711 G A GLP2R Missense_Mutation p.D101N 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 18 13826628 13826628 C T MC5R Silent p.S288S 0.40 TCGA-EE-A3J5-06 18 19244145 19244145 A G ABHD3 Missense_Mutation p.V201A 0.40 tolerated(0.05) benign(0.083) TCGA-EE-A3J5-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.38 TCGA-EE-A3J5-06 18 22057566 22057566 C T HRH4 3'UTR 0.36 TCGA-EE-A3J5-06 18 2732330 2732330 T C SMCHD1 Missense_Mutation p.L1039P 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 18 2732331 2732331 A T SMCHD1 Silent p.L1039L 0.36 TCGA-EE-A3J5-06 18 2884977 2884977 C T EMILIN2 Silent p.F91F 0.39 TCGA-EE-A3J5-06 18 29052749 29052749 C T DSG3 Missense_Mutation p.S700F 0.26 deleterious(0) probably_damaging(0.969) TCGA-EE-A3J5-06 18 29126391 29126391 C T DSG2 Silent p.V1014V 0.47 TCGA-EE-A3J5-06 18 30275462 30275462 A G KLHL14 Missense_Mutation p.F375L 0.36 tolerated(0.23) benign(0.001) TCGA-EE-A3J5-06 18 3126851 3126851 G A MYOM1 Missense_Mutation p.R947C 0.20 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A3J5-06 18 31322862 31322862 C T ASXL3 Missense_Mutation p.S1017F 0.40 probably_damaging(0.999) TCGA-EE-A3J5-06 18 3277816 3277816 T C MYL12B Missense_Mutation p.F134L 0.25 tolerated(0.06) benign(0.07) TCGA-EE-A3J5-06 18 3457604 3457604 C T TGIF1 Missense_Mutation p.S291F 0.29 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-EE-A3J5-06 18 3814214 3814214 G A DLGAP1 Silent p.C339C 0.32 TCGA-EE-A3J5-06 18 40850388 40850388 C T SYT4 Missense_Mutation p.G399E 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-EE-A3J5-06 18 42532894 42532894 C T SETBP1 Missense_Mutation p.L1197F 0.25 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-EE-A3J5-06 18 45371801 45371801 G A SMAD2 Missense_Mutation p.S397F 0.41 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 18 47479676 47479676 C T MYO5B Missense_Mutation p.R569K 0.32 tolerated(0.35) possibly_damaging(0.626) TCGA-EE-A3J5-06 18 47581731 47581731 G A MYO5B Silent p.I15I 0.39 TCGA-EE-A3J5-06 18 47778153 47778153 C T CCDC11 Missense_Mutation p.E159K 0.31 deleterious(0) possibly_damaging(0.592) TCGA-EE-A3J5-06 18 48190868 48190868 C T MAPK4 Silent p.S180S 0.28 TCGA-EE-A3J5-06 18 50592420 50592420 G A DCC Missense_Mutation p.G382E 0.29 tolerated(0.7) possibly_damaging(0.644) TCGA-EE-A3J5-06 18 50683882 50683882 G A DCC Missense_Mutation p.R473K 0.43 deleterious(0.03) possibly_damaging(0.895) TCGA-EE-A3J5-06 18 50918201 50918201 G A DCC Missense_Mutation p.V878M 0.31 tolerated(0.1) possibly_damaging(0.908) TCGA-EE-A3J5-06 18 50976955 50976955 C T DCC Silent p.T1105T 0.39 TCGA-EE-A3J5-06 18 52895477 52895477 C T TCF4 Silent p.S767S 0.39 TCGA-EE-A3J5-06 18 54278258 54278258 G A TXNL1 Missense_Mutation p.P269L 0.42 deleterious(0.05) probably_damaging(0.929) TCGA-EE-A3J5-06 18 55020055 55020055 C T ST8SIA3 5'UTR 0.37 TCGA-EE-A3J5-06 18 56202538 56202538 C T ALPK2 Missense_Mutation p.M1627I 0.29 tolerated(1) benign(0) TCGA-EE-A3J5-06 18 59824980 59824980 G A PIGN Missense_Mutation p.R95W 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 18 61326740 61326740 G A SERPINB3 Missense_Mutation p.H82Y 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J5-06 18 61326748 61326748 C T SERPINB3 Missense_Mutation p.G79E 0.22 tolerated(1) benign(0.02) TCGA-EE-A3J5-06 18 61600305 61600305 G A SERPINB10 Missense_Mutation p.M219I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 18 6243326 6243326 C T L3MBTL4 Missense_Mutation p.E143K 0.45 deleterious(0.05) possibly_damaging(0.452) TCGA-EE-A3J5-06 18 63476994 63476994 G A CDH7 Missense_Mutation p.E89K 0.25 deleterious(0) probably_damaging(0.925) TCGA-EE-A3J5-06 18 63477036 63477036 G A CDH7 Missense_Mutation p.D103N 0.39 tolerated(0.18) probably_damaging(0.992) TCGA-EE-A3J5-06 18 64172006 64172006 G A CDH19 3'UTR 0.29 TCGA-EE-A3J5-06 18 64211364 64211364 G T CDH19 Missense_Mutation p.S353Y 0.38 deleterious(0) benign(0.284) TCGA-EE-A3J5-06 18 67365639 67365639 G A DOK6 Splice_Site p.X137_splice 0.40 TCGA-EE-A3J5-06 18 67531542 67531542 G A CD226 3'UTR 0.37 TCGA-EE-A3J5-06 18 6909015 6909015 G A ARHGAP28 Missense_Mutation p.G537E 0.19 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 18 7013906 7013906 C T LAMA1 Missense_Mutation p.D1091N 0.55 tolerated(0.19) benign(0.073) TCGA-EE-A3J5-06 18 72173110 72173110 C T CNDP2 Silent p.L77L 0.29 TCGA-EE-A3J5-06 18 72353073 72353073 C T ZNF407 Silent p.V1599V 0.36 TCGA-EE-A3J5-06 18 74091637 74091637 G A ZNF516 Silent p.S811S 0.39 TCGA-EE-A3J5-06 18 74611020 74611020 C T ZNF236 Missense_Mutation p.T577I 0.31 deleterious(0) probably_damaging(0.965) TCGA-EE-A3J5-06 18 74625730 74625730 G A ZNF236 Silent p.K977K 0.29 TCGA-EE-A3J5-06 18 76754750 76754750 C T SALL3 Missense_Mutation p.P920L 0.60 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J5-06 18 76973991 76973991 G A ATP9B Missense_Mutation p.G354R 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 18 76973992 76973992 G A ATP9B Missense_Mutation p.G354E 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 18 77108129 77108129 C T ATP9B Intron 0.30 TCGA-EE-A3J5-06 18 77659616 77659616 G A KCNG2 Missense_Mutation p.V401I 0.37 tolerated(0.91) probably_damaging(0.998) TCGA-EE-A3J5-06 18 9255333 9255333 G A ANKRD12 Missense_Mutation p.E690K 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3J5-06 18 9275539 9275539 C T ANKRD12 Silent p.S1927S 0.34 TCGA-EE-A3J5-06 19 10157488 10157488 G A C3P1 RNA 0.48 TCGA-EE-A3J5-06 19 10221786 10221786 C T PPAN Intron 0.14 TCGA-EE-A3J5-06 19 11311656 11311656 C T DOCK6 Missense_Mutation p.E1921K 0.55 tolerated(0.4) benign(0.041) TCGA-EE-A3J5-06 19 11651918 11651918 G A CNN1 Missense_Mutation p.E31K 0.42 deleterious(0.02) possibly_damaging(0.692) TCGA-EE-A3J5-06 19 11977055 11977055 C T ZNF439 Silent p.F28F 0.47 TCGA-EE-A3J5-06 19 12187891 12187891 T C ZNF844 Silent p.V652V 0.13 TCGA-EE-A3J5-06 19 12638133 12638133 G C ZNF564 Missense_Mutation p.D263E 0.48 tolerated(0.3) possibly_damaging(0.636) TCGA-EE-A3J5-06 19 12807456 12807456 C T FBXW9 5'UTR 0.11 TCGA-EE-A3J5-06 19 12963181 12963181 A G MAST1 Missense_Mutation p.N350S 0.49 tolerated(0.54) benign(0.013) TCGA-EE-A3J5-06 19 12975863 12975863 C T MAST1 Silent p.L503L 0.53 TCGA-EE-A3J5-06 19 13397556 13397556 G A CACNA1A Missense_Mutation p.P1105L 0.48 possibly_damaging(0.851) TCGA-EE-A3J5-06 19 14150599 14150599 G A IL27RA Silent p.V137V 0.13 TCGA-EE-A3J5-06 19 14150600 14150600 G A IL27RA Missense_Mutation p.D138N 0.13 tolerated(0.09) benign(0.086) TCGA-EE-A3J5-06 19 14910263 14910263 G A OR7C1 Missense_Mutation p.S229F 0.56 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A3J5-06 19 15355557 15355557 T C BRD4 Silent p.S725S 0.08 TCGA-EE-A3J5-06 19 15838853 15838853 C A OR10H2 5'UTR 0.53 TCGA-EE-A3J5-06 19 15871692 15871692 G A LLNLR-249E10.1 RNA 0.53 TCGA-EE-A3J5-06 19 16034838 16034838 C T CYP4F11 Silent p.K234K 0.06 TCGA-EE-A3J5-06 19 16641421 16641421 G A CHERP Missense_Mutation p.P284L 0.07 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J5-06 19 17737587 17737587 G A UNC13A Missense_Mutation p.P1310S 0.11 tolerated(0.14) benign(0.293) TCGA-EE-A3J5-06 19 17740067 17740067 G A UNC13A Silent p.S1245S 0.64 TCGA-EE-A3J5-06 19 17922646 17922646 C T B3GNT3 Silent p.F278F 0.10 TCGA-EE-A3J5-06 19 1808278 1808278 C A ATP8B3 Silent p.L153L 0.52 TCGA-EE-A3J5-06 19 18542189 18542189 C T SSBP4 Silent p.P132P 0.75 TCGA-EE-A3J5-06 19 18555554 18555554 G A ELL 3'UTR 0.15 TCGA-EE-A3J5-06 19 18778810 18778810 C T KLHL26 Silent p.F201F 0.49 TCGA-EE-A3J5-06 19 18853836 18853836 G A CRTC1 Silent p.Q81Q 0.37 TCGA-EE-A3J5-06 19 19337652 19337652 C T NCAN Missense_Mutation p.P477L 0.12 tolerated(0.07) benign(0.356) TCGA-EE-A3J5-06 19 19625912 19625913 - G TSSK6 Frame_Shift_Ins p.G109Rfs*299 0.38 TCGA-EE-A3J5-06 19 19648222 19648222 C T YJEFN3 Silent p.F263F 0.45 TCGA-EE-A3J5-06 19 21205628 21205628 G A ZNF430 Missense_Mutation p.E13K 0.34 tolerated_low_confidence(0.85) benign(0.007) TCGA-EE-A3J5-06 19 2247013 2247013 G A SF3A2 Missense_Mutation p.A180T 0.51 tolerated_low_confidence(0.07) possibly_damaging(0.834) TCGA-EE-A3J5-06 19 22780106 22780106 G A RN7SL860P 5'Flank 0.54 TCGA-EE-A3J5-06 19 22846622 22846622 C T ZNF492 Nonsense_Mutation p.R51* 0.54 TCGA-EE-A3J5-06 19 2408369 2408369 G A TMPRSS9 Silent p.T252T 0.57 TCGA-EE-A3J5-06 19 2799783 2799783 G A THOP1 Missense_Mutation p.E195K 0.08 deleterious(0.02) benign(0.133) TCGA-EE-A3J5-06 19 3163093 3163093 C T GNA15 3'UTR 0.54 TCGA-EE-A3J5-06 19 33503559 33503559 C T RHPN2 Silent p.L154L 0.56 TCGA-EE-A3J5-06 19 33585094 33585094 G A GPATCH1 Missense_Mutation p.E158K 0.38 tolerated(0.28) benign(0.203) TCGA-EE-A3J5-06 19 33696318 33696318 G A LRP3 Silent p.G214G 0.40 TCGA-EE-A3J5-06 19 35514221 35514221 C T GRAMD1A Silent p.S645S 0.24 TCGA-EE-A3J5-06 19 36046382 36046382 G C ATP4A Missense_Mutation p.P706R 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A3J5-06 19 36291082 36291082 G A PRODH2 Missense_Mutation p.S490F 0.27 deleterious(0) probably_damaging(0.917) TCGA-EE-A3J5-06 19 36317289 36317289 C T NPHS1 3'UTR 0.29 TCGA-EE-A3J5-06 19 36335128 36335128 G T NPHS1 Missense_Mutation p.R697S 0.07 tolerated(0.15) benign(0.082) TCGA-EE-A3J5-06 19 36339032 36339032 C T NPHS1 Missense_Mutation p.E451K 0.22 tolerated(0.51) benign(0.014) TCGA-EE-A3J5-06 19 36342239 36342239 C T NPHS1 Missense_Mutation p.E108K 0.24 tolerated(0.71) benign(0.099) TCGA-EE-A3J5-06 19 36505138 36505138 C T ALKBH6 5'UTR 0.50 TCGA-EE-A3J5-06 19 36940091 36940091 G A ZNF566 Missense_Mutation p.R350C 0.44 tolerated(0.11) probably_damaging(0.964) TCGA-EE-A3J5-06 19 37006080 37006080 G A ZNF260 Missense_Mutation p.H21Y 0.20 deleterious(0.02) benign(0.354) TCGA-EE-A3J5-06 19 37367916 37367916 C T ZNF345 Missense_Mutation p.L62F 0.43 tolerated(0.21) benign(0.002) TCGA-EE-A3J5-06 19 3739054 3739054 G A TJP3 Missense_Mutation p.R527Q 0.60 deleterious(0) possibly_damaging(0.681) TCGA-EE-A3J5-06 19 37677466 37677466 G A ZNF585B Missense_Mutation p.P325S 0.33 deleterious(0.03) benign(0.015) TCGA-EE-A3J5-06 19 38160033 38160033 G A ZNF781 3'UTR 0.45 TCGA-EE-A3J5-06 19 38741973 38741973 C A PPP1R14A Silent p.R143R 0.43 TCGA-EE-A3J5-06 19 38850153 38850153 G A CATSPERG Missense_Mutation p.E514K 0.37 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A3J5-06 19 38949968 38949968 G A RYR1 Missense_Mutation p.A784T 0.31 probably_damaging(0.976) TCGA-EE-A3J5-06 19 38956829 38956829 A T RYR1 Missense_Mutation p.N990I 0.46 probably_damaging(0.999) TCGA-EE-A3J5-06 19 38964189 38964189 G A RYR1 Missense_Mutation p.G1313D 0.60 possibly_damaging(0.474) TCGA-EE-A3J5-06 19 39227957 39227957 C T CAPN12 Missense_Mutation p.E401K 0.57 tolerated(0.17) benign(0.13) TCGA-EE-A3J5-06 19 39234776 39234776 G A CAPN12 Silent p.I10I 0.50 TCGA-EE-A3J5-06 19 39412175 39412175 G A SARS2 Missense_Mutation p.P178S 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 19 39597622 39597622 C T PAPL Silent p.F383F 0.20 TCGA-EE-A3J5-06 19 39798497 39798497 G A LRFN1 Missense_Mutation p.P698S 0.31 tolerated(1) benign(0) TCGA-EE-A3J5-06 19 39804912 39804912 C T LRFN1 Silent p.L355L 0.31 TCGA-EE-A3J5-06 19 39879777 39879777 G A PAF1 Nonsense_Mutation p.Q175* 0.35 TCGA-EE-A3J5-06 19 39879778 39879778 G A PAF1 Silent p.S174S 0.35 TCGA-EE-A3J5-06 19 40398498 40398498 A G FCGBP Missense_Mutation p.F2157L 0.10 benign(0.418) TCGA-EE-A3J5-06 19 40884017 40884017 C T PLD3 Silent p.S470S 0.21 TCGA-EE-A3J5-06 19 41442126 41442126 G A CYP2B7P RNA 0.46 TCGA-EE-A3J5-06 19 41600922 41600922 A G CYP2A13 Missense_Mutation p.N407S 0.17 tolerated(0.17) benign(0.003) TCGA-EE-A3J5-06 19 42507525 42507525 C T GRIK5 Missense_Mutation p.E825K 0.32 deleterious(0.01) benign(0.118) TCGA-EE-A3J5-06 19 42840485 42840485 C T MEGF8 Missense_Mutation p.P411S 0.40 tolerated(0.55) probably_damaging(0.984) TCGA-EE-A3J5-06 19 42858152 42858152 C T MEGF8 Silent p.S1262S 0.32 TCGA-EE-A3J5-06 19 43411959 43411959 C T PSG6 Missense_Mutation p.E252K 0.21 tolerated(0.41) probably_damaging(0.917) TCGA-EE-A3J5-06 19 43430749 43430749 C T PSG7 Missense_Mutation p.G277S 0.23 deleterious(0) possibly_damaging(0.686) TCGA-EE-A3J5-06 19 43586745 43586745 C T PSG2 5'UTR 0.37 TCGA-EE-A3J5-06 19 43865475 43865475 C T CD177 3'UTR 0.30 TCGA-EE-A3J5-06 19 43979579 43979579 C T PHLDB3 Missense_Mutation p.E636K 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A3J5-06 19 44011004 44011004 A G ETHE1 Nonstop_Mutation p.*255Rext*22 0.24 TCGA-EE-A3J5-06 19 44536184 44536184 T G ZNF222 Silent p.G159G 0.37 TCGA-EE-A3J5-06 19 44739578 44739578 G A ZNF227 Missense_Mutation p.G332E 0.35 tolerated(0.1) possibly_damaging(0.756) TCGA-EE-A3J5-06 19 44777580 44777580 G A ZNF233 Missense_Mutation p.G256E 0.23 tolerated(0.14) benign(0.437) TCGA-EE-A3J5-06 19 45024667 45024667 C T CEACAM20 RNA 0.18 TCGA-EE-A3J5-06 19 4511009 4511009 G A PLIN4 Missense_Mutation p.A974V 0.47 deleterious(0.03) benign(0.044) TCGA-EE-A3J5-06 19 45185854 45185854 C T CEACAM19 Missense_Mutation p.P270S 0.46 tolerated(0.38) benign(0.022) TCGA-EE-A3J5-06 19 4540018 4540018 G A LRG1 Missense_Mutation p.S3F 0.42 tolerated_low_confidence(0.16) benign(0.011) TCGA-EE-A3J5-06 19 45452002 45452002 C T APOC2 Missense_Mutation p.P34S 0.23 tolerated(0.29) benign(0.046) TCGA-EE-A3J5-06 19 45809928 45809928 G A CKM 3'UTR 0.36 TCGA-EE-A3J5-06 19 45855602 45855602 G A ERCC2 Silent p.A685A 0.26 TCGA-EE-A3J5-06 19 45895485 45895485 G A PPP1R13L Missense_Mutation p.P490S 0.32 deleterious(0.02) possibly_damaging(0.641) TCGA-EE-A3J5-06 19 45920149 45920149 G A ERCC1 Missense_Mutation p.P178S 0.39 tolerated(0.17) possibly_damaging(0.577) TCGA-EE-A3J5-06 19 46202122 46202122 C T QPCTL Missense_Mutation p.R284C 0.17 deleterious(0.01) possibly_damaging(0.868) TCGA-EE-A3J5-06 19 46283579 46283579 A G DMPK 5'UTR 0.47 TCGA-EE-A3J5-06 19 46387947 46387947 G T IRF2BP1 Silent p.L362L 0.44 TCGA-EE-A3J5-06 19 46498687 46498687 G A CCDC61 5'Flank 0.32 TCGA-EE-A3J5-06 19 47535945 47535945 C T NPAS1 Silent p.F159F 0.48 TCGA-EE-A3J5-06 19 47823884 47823884 C T C5AR1 Silent p.L284L 0.42 TCGA-EE-A3J5-06 19 48339556 48339556 G A CRX Missense_Mutation p.E53K 0.15 deleterious(0.03) possibly_damaging(0.657) TCGA-EE-A3J5-06 19 48925085 48925085 C T GRIN2D Missense_Mutation p.T712I 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 19 48956168 48956168 C A GRWD1 Missense_Mutation p.F409L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 19 48967992 48967992 C T KCNJ14 Silent p.P423P 0.28 TCGA-EE-A3J5-06 19 49001493 49001493 C T LMTK3 Missense_Mutation p.E974K 0.22 unknown(0) TCGA-EE-A3J5-06 19 49001494 49001494 C T LMTK3 Silent p.A973A 0.23 TCGA-EE-A3J5-06 19 49013314 49013314 G A LMTK3 Silent p.S138S 0.15 TCGA-EE-A3J5-06 19 49363626 49363626 G A PLEKHA4 Missense_Mutation p.R153C 0.20 tolerated(0.05) probably_damaging(0.945) TCGA-EE-A3J5-06 19 49448111 49448111 C T DHDH Missense_Mutation p.S309L 0.40 deleterious(0.05) benign(0) TCGA-EE-A3J5-06 19 49558137 49558137 G T CGB7 Silent p.T48T 0.22 TCGA-EE-A3J5-06 19 49691975 49691975 G A TRPM4 Silent p.E607E 0.28 TCGA-EE-A3J5-06 19 49912525 49912525 C T CCDC155 Silent p.I377I 0.43 TCGA-EE-A3J5-06 19 49983634 49983634 C T FLT3LG Silent p.L187L 0.21 TCGA-EE-A3J5-06 19 50243069 50243069 G A TSKS Silent p.T581T 0.20 TCGA-EE-A3J5-06 19 50248481 50248481 G A TSKS Missense_Mutation p.R389W 0.51 deleterious(0) probably_damaging(0.953) TCGA-EE-A3J5-06 19 50334627 50334627 C T MED25 Missense_Mutation p.S380F 0.42 deleterious(0.02) benign(0.016) TCGA-EE-A3J5-06 19 50334628 50334628 C T MED25 Silent p.S380S 0.42 TCGA-EE-A3J5-06 19 50436307 50436307 C T ATF5 Silent p.I269I 0.64 TCGA-EE-A3J5-06 19 50475286 50475286 G A VRK3 3'Flank 0.51 TCGA-EE-A3J5-06 19 50951635 50951635 C T MYBPC2 Missense_Mutation p.S487F 0.24 tolerated(0.16) probably_damaging(0.936) TCGA-EE-A3J5-06 19 51009378 51009378 C T JOSD2 3'UTR 0.39 TCGA-EE-A3J5-06 19 51021509 51021509 G A LRRC4B Silent p.F487F 0.30 TCGA-EE-A3J5-06 19 51140720 51140720 G A SYT3 5'UTR 0.39 TCGA-EE-A3J5-06 19 51165791 51165791 C T SHANK1 Missense_Mutation p.A1973T 0.20 unknown(0) TCGA-EE-A3J5-06 19 51329058 51329058 C T KLK15 Silent p.R255R 0.40 TCGA-EE-A3J5-06 19 51329958 51329958 A T KLK15 Silent p.S179S 0.23 TCGA-EE-A3J5-06 19 51499431 51499431 G A KLK8 Nonsense_Mutation p.Q268* 0.16 TCGA-EE-A3J5-06 19 51503315 51503315 G A KLK8 Missense_Mutation p.H189Y 0.36 tolerated(0.07) benign(0.012) TCGA-EE-A3J5-06 19 51527505 51527505 G A KLK11 Missense_Mutation p.R119W 0.22 tolerated(0.19) probably_damaging(0.956) TCGA-EE-A3J5-06 19 51527506 51527506 G A KLK11 Silent p.T118T 0.23 TCGA-EE-A3J5-06 19 51629089 51629089 G A SIGLEC9 Silent p.G219G 0.26 TCGA-EE-A3J5-06 19 51647786 51647786 G A SIGLEC7 Missense_Mutation p.G186E 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J5-06 19 51656403 51656403 C T SIGLEC7 Silent p.I435I 0.46 TCGA-EE-A3J5-06 19 51729253 51729253 G A CD33 Missense_Mutation p.D205N 0.38 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J5-06 19 51875730 51875730 C T NKG7 Silent p.L20L 0.30 TCGA-EE-A3J5-06 19 51918103 51918103 C T SIGLEC10 Silent p.Q530Q 0.45 TCGA-EE-A3J5-06 19 52001429 52001429 C T SIGLEC12 Silent p.G416G 0.31 TCGA-EE-A3J5-06 19 52003322 52003322 G A SIGLEC12 Silent p.F220F 0.39 TCGA-EE-A3J5-06 19 52327666 52327666 G A FPR3 Missense_Mutation p.G222E 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 19 52825009 52825009 A C ZNF480 Missense_Mutation p.E169A 0.40 tolerated(0.62) benign(0.038) TCGA-EE-A3J5-06 19 53885297 53885297 C T ZNF525 3'UTR 0.19 TCGA-EE-A3J5-06 19 53911944 53911944 G A ZNF765 Missense_Mutation p.G379E 0.37 deleterious(0.02) possibly_damaging(0.789) TCGA-EE-A3J5-06 19 53959559 53959559 C T ZNF761 RNA 0.17 TCGA-EE-A3J5-06 19 54080487 54080487 C T ZNF331 Missense_Mutation p.R225W 0.30 tolerated(0.16) probably_damaging(0.983) TCGA-EE-A3J5-06 19 54204520 54204520 G A MIR520B RNA 0.30 TCGA-EE-A3J5-06 19 54299120 54299120 C T NLRP12 Missense_Mutation p.V1031I 0.35 tolerated(0.19) unknown(0) TCGA-EE-A3J5-06 19 54313484 54313484 C T NLRP12 Missense_Mutation p.E477K 0.21 deleterious(0.03) possibly_damaging(0.606) TCGA-EE-A3J5-06 19 54314235 54314235 C A NLRP12 Silent p.L226L 0.27 TCGA-EE-A3J5-06 19 54395022 54395022 G A PRKCG Silent p.T208T 0.20 TCGA-EE-A3J5-06 19 5456627 5456627 C T ZNRF4 Silent p.S375S 0.51 TCGA-EE-A3J5-06 19 54673270 54673270 C T TMC4 Nonsense_Mutation p.W147* 0.40 TCGA-EE-A3J5-06 19 54675776 54675776 A G TMC4 Silent p.P58P 0.18 TCGA-EE-A3J5-06 19 54678032 54678032 G A MBOAT7 Silent p.A375A 0.39 TCGA-EE-A3J5-06 19 54678033 54678033 G A MBOAT7 Missense_Mutation p.A375V 0.39 tolerated(0.08) probably_damaging(0.936) TCGA-EE-A3J5-06 19 54744200 54744200 T C LILRA6 Missense_Mutation p.N403S 0.07 tolerated(1) benign(0.016) TCGA-EE-A3J5-06 19 54759955 54759958 GTTT A LILRB5 In_Frame_Del p.K201del 0.25 TCGA-EE-A3J5-06 19 54848304 54848304 G A LILRA4 Silent p.L355L 0.35 TCGA-EE-A3J5-06 19 54947051 54947051 C T TTYH1 Intron 0.50 TCGA-EE-A3J5-06 19 54963334 54963334 G A LENG8 Missense_Mutation p.E35K 0.41 tolerated(0.11) probably_damaging(0.996) TCGA-EE-A3J5-06 19 55045032 55045032 C T KIR3DX1 Missense_Mutation p.S51F 0.33 tolerated(0.13) benign(0.112) TCGA-EE-A3J5-06 19 55147865 55147865 C T AC009892.10 Intron 0.11 TCGA-EE-A3J5-06 19 55239286 55239286 C T KIR3DL3 Missense_Mutation p.L189F 0.44 tolerated(0.7) possibly_damaging(0.455) TCGA-EE-A3J5-06 19 55418026 55418026 A G NCR1 Silent p.P72P 0.44 TCGA-EE-A3J5-06 19 55447703 55447703 G A NLRP7 Silent p.I742I 0.16 TCGA-EE-A3J5-06 19 55449476 55449476 C T NLRP7 Missense_Mutation p.D689N 0.23 tolerated(0.4) benign(0.007) TCGA-EE-A3J5-06 19 55450892 55450892 C T NLRP7 Missense_Mutation p.R432Q 0.45 tolerated(0.23) benign(0.002) TCGA-EE-A3J5-06 19 55501871 55501871 T C NLRP2 Silent p.L847L 0.40 TCGA-EE-A3J5-06 19 55710238 55710238 T C PTPRH Missense_Mutation p.N488S 0.38 possibly_damaging(0.842) TCGA-EE-A3J5-06 19 55854202 55854202 C T SUV420H2 Silent p.I123I 0.28 TCGA-EE-A3J5-06 19 56228155 56228155 C T NLRP9 Missense_Mutation p.E757K 0.42 tolerated(0.58) benign(0.022) TCGA-EE-A3J5-06 19 56243537 56243537 C T NLRP9 Missense_Mutation p.E554K 0.32 deleterious(0.01) possibly_damaging(0.678) TCGA-EE-A3J5-06 19 56320573 56320573 T G NLRP11 Missense_Mutation p.N468T 0.28 tolerated(0.47) benign(0.024) TCGA-EE-A3J5-06 19 56413429 56413429 G A NLRP13 Missense_Mutation p.R921C 0.40 tolerated(0.1) benign(0.007) TCGA-EE-A3J5-06 19 56539571 56539571 C T NLRP5 Missense_Mutation p.P658S 0.50 tolerated(0.39) benign(0.077) TCGA-EE-A3J5-06 19 56600191 56600191 G C ZNF787 Missense_Mutation p.T117R 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 19 56895747 56895747 C T ZNF582 Missense_Mutation p.A347T 0.41 tolerated(0.18) probably_damaging(0.996) TCGA-EE-A3J5-06 19 56895748 56895748 C T ZNF582 Silent p.K346K 0.41 TCGA-EE-A3J5-06 19 56969610 56969610 G A ZNF667 Missense_Mutation p.S56F 0.17 tolerated(0.09) benign(0.352) TCGA-EE-A3J5-06 19 57066807 57066807 C T ZFP28 3'UTR 0.44 TCGA-EE-A3J5-06 19 57175863 57175863 G A ZNF835 Missense_Mutation p.S235L 0.53 deleterious(0.02) possibly_damaging(0.656) TCGA-EE-A3J5-06 19 57326492 57326492 G A PEG3 Silent p.I1106I 0.31 TCGA-EE-A3J5-06 19 57326576 57326576 G A PEG3 Silent p.T1078T 0.22 TCGA-EE-A3J5-06 19 57649966 57649966 C T ZIM3 Missense_Mutation p.G6R 0.41 tolerated(0.11) probably_damaging(0.991) TCGA-EE-A3J5-06 19 58491078 58491078 G A ZNF606 Nonsense_Mutation p.Q324* 0.46 TCGA-EE-A3J5-06 19 58805742 58805742 C T ZNF8 Missense_Mutation p.P190S 0.53 tolerated(0.33) benign(0.026) TCGA-EE-A3J5-06 19 6480023 6480023 C G DENND1C Silent p.A19A 0.64 TCGA-EE-A3J5-06 19 6760927 6760927 G A SH2D3A Silent p.P47P 0.15 TCGA-EE-A3J5-06 19 6760928 6760928 G A SH2D3A Missense_Mutation p.P47L 0.14 tolerated(0.23) probably_damaging(0.998) TCGA-EE-A3J5-06 19 6828894 6828894 G A VAV1 Silent p.R416R 0.42 TCGA-EE-A3J5-06 19 6908754 6908754 G A EMR1 Missense_Mutation p.E365K 0.56 tolerated(0.31) benign(0.012) TCGA-EE-A3J5-06 19 6977270 6977270 C T EMR4P RNA 0.17 TCGA-EE-A3J5-06 19 7626470 7626470 C T PNPLA6 3'UTR 0.80 TCGA-EE-A3J5-06 19 8136957 8136957 C T FBN3 Missense_Mutation p.R2688Q 0.50 deleterious(0.02) possibly_damaging(0.781) TCGA-EE-A3J5-06 19 8136997 8136997 C T FBN3 Missense_Mutation p.E2675K 0.09 deleterious(0) probably_damaging(0.978) TCGA-EE-A3J5-06 19 8550496 8550496 G A HNRNPM Missense_Mutation p.G395E 0.45 tolerated(0.28) benign(0.055) TCGA-EE-A3J5-06 19 8610545 8610545 C T MYO1F Missense_Mutation p.E449K 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 19 8618077 8618077 C T MYO1F Silent p.L150L 0.09 TCGA-EE-A3J5-06 19 868150 868150 G A MED16 Missense_Mutation p.P862L 0.62 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-EE-A3J5-06 19 8933403 8933403 G A ZNF558 Intron 0.52 TCGA-EE-A3J5-06 19 8994513 8994513 G A MUC16 Silent p.F13793F 0.46 TCGA-EE-A3J5-06 19 9049034 9049034 G A MUC16 Missense_Mutation p.P10866L 0.49 benign(0) TCGA-EE-A3J5-06 19 9056568 9056568 C T MUC16 Missense_Mutation p.G10293E 0.14 benign(0.007) TCGA-EE-A3J5-06 19 9057400 9057400 C T MUC16 Missense_Mutation p.E10016K 0.45 unknown(0) TCGA-EE-A3J5-06 19 9064771 9064771 C A MUC16 Missense_Mutation p.A7559S 0.49 unknown(0) TCGA-EE-A3J5-06 19 9088103 9088103 T C MUC16 Missense_Mutation p.T1238A 0.13 unknown(0) TCGA-EE-A3J5-06 19 9204289 9204289 C T OR1M1 Silent p.F123F 0.48 TCGA-EE-A3J5-06 19 9297370 9297370 C T OR7D2 Missense_Mutation p.L305F 0.34 tolerated_low_confidence(0.44) benign(0.021) TCGA-EE-A3J5-06 19 9490759 9490759 G A ZNF177 Missense_Mutation p.D94N 0.64 tolerated(0.4) possibly_damaging(0.883) TCGA-EE-A3J5-06 19 994334 994334 G A WDR18 Silent p.P430P 0.16 TCGA-EE-A3J5-06 1 100155176 100155176 G A PALMD Missense_Mutation p.D454N 0.22 tolerated(0.34) benign(0.004) TCGA-EE-A3J5-06 1 103364265 103364265 C T COL11A1 Missense_Mutation p.G1402E 0.36 unknown(0) TCGA-EE-A3J5-06 1 109394539 109394539 C T AKNAD1 Missense_Mutation p.G250S 0.39 tolerated(0.11) probably_damaging(0.96) TCGA-EE-A3J5-06 1 110022014 110022014 C T SYPL2 Silent p.I221I 0.39 TCGA-EE-A3J5-06 1 110944092 110944092 A G LAMTOR5 3'UTR 0.21 TCGA-EE-A3J5-06 1 111061079 111061079 G A KCNA10 Missense_Mutation p.L111F 0.41 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J5-06 1 111146998 111146998 T C KCNA2 Missense_Mutation p.E136G 0.33 deleterious(0.02) benign(0.29) TCGA-EE-A3J5-06 1 111494239 111494239 G A LRIF1 Nonsense_Mutation p.Q423* 0.23 TCGA-EE-A3J5-06 1 111661467 111661467 G A DRAM2 Missense_Mutation p.S218F 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 1 112031365 112031365 C T ADORA3 Missense_Mutation p.D247N 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3J5-06 1 11346122 11346122 C T UBIAD1 Silent p.L317L 0.46 TCGA-EE-A3J5-06 1 1152973 1152973 G A SDF4 Silent p.P336P 0.34 TCGA-EE-A3J5-06 1 116310980 116310980 A G CASQ2 Silent p.S61S 0.39 TCGA-EE-A3J5-06 1 117487313 117487313 C T PTGFRN Missense_Mutation p.S144F 0.27 tolerated(0.06) benign(0.003) TCGA-EE-A3J5-06 1 118535096 118535096 G A SPAG17 Missense_Mutation p.S1785F 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 1 118558619 118558619 G A SPAG17 Missense_Mutation p.S1419F 0.51 tolerated(0.26) benign(0.02) TCGA-EE-A3J5-06 1 11917708 11917708 C T NPPB 3'UTR 0.34 TCGA-EE-A3J5-06 1 11918270 11918270 C T NPPB Splice_Site p.X130_splice 0.39 TCGA-EE-A3J5-06 1 120056998 120056998 G A HSD3B1 Nonsense_Mutation p.W284* 0.21 TCGA-EE-A3J5-06 1 120468083 120468083 C T NOTCH2 Silent p.G1452G 0.44 TCGA-EE-A3J5-06 1 12090088 12090088 G A MIIP Silent p.V283V 0.40 TCGA-EE-A3J5-06 1 12304631 12304631 C T VPS13D Missense_Mutation p.S135L 0.39 probably_damaging(0.943) TCGA-EE-A3J5-06 1 12309337 12309337 C T VPS13D Missense_Mutation p.P169S 0.40 probably_damaging(0.986) TCGA-EE-A3J5-06 1 12954681 12954681 C T PRAMEF10 Missense_Mutation p.R201K 0.15 tolerated(0.13) benign(0.003) TCGA-EE-A3J5-06 1 145299837 145299837 C A NBPF10 Missense_Mutation p.R296S 0.10 benign(0.308) TCGA-EE-A3J5-06 1 145549307 145549307 G A ANKRD35 5'UTR 0.45 TCGA-EE-A3J5-06 1 145580466 145580466 G A PIAS3 Intron 0.32 TCGA-EE-A3J5-06 1 147127334 147127334 C T ACP6 Missense_Mutation p.D197N 0.16 tolerated(0.21) benign(0) TCGA-EE-A3J5-06 1 147381082 147381082 G T GJA8 Nonsense_Mutation p.E334* 0.47 TCGA-EE-A3J5-06 1 149895905 149895905 C T SF3B4 Silent p.G305G 0.42 TCGA-EE-A3J5-06 1 149916786 149916786 G A OTUD7B Missense_Mutation p.S501F 0.43 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 1 150257024 150257024 C T C1orf51 Missense_Mutation p.T180I 0.46 tolerated(0.25) probably_damaging(0.999) TCGA-EE-A3J5-06 1 150257025 150257025 C T C1orf51 Silent p.T180T 0.45 TCGA-EE-A3J5-06 1 150445193 150445193 C T RPRD2 Missense_Mutation p.P1257S 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EE-A3J5-06 1 150531535 150531535 G A ADAMTSL4 Missense_Mutation p.G886E 0.46 tolerated(0.25) benign(0.167) TCGA-EE-A3J5-06 1 150722505 150722505 G A CTSS Missense_Mutation p.P257L 0.28 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A3J5-06 1 151141550 151141550 C T SCNM1 Missense_Mutation p.P228S 0.27 deleterious_low_confidence(0.01) benign(0.039) TCGA-EE-A3J5-06 1 151377413 151377413 A G POGZ Silent p.S1366S 0.27 TCGA-EE-A3J5-06 1 151780050 151780050 G A RORC Silent p.I485I 0.30 TCGA-EE-A3J5-06 1 152057883 152057883 C T TCHHL1 Missense_Mutation p.G759S 0.41 tolerated(0.13) benign(0.001) TCGA-EE-A3J5-06 1 152080059 152080059 C T TCHH Silent p.R1878R 0.34 TCGA-EE-A3J5-06 1 152083878 152083878 C T TCHH Silent p.E605E 0.28 TCGA-EE-A3J5-06 1 152128445 152128445 G A RPTN Missense_Mutation p.S377F 0.31 deleterious(0.02) benign(0.015) TCGA-EE-A3J5-06 1 152193173 152193173 C T HRNR Missense_Mutation p.R311Q 0.44 unknown(0) TCGA-EE-A3J5-06 1 152193774 152193774 C T HRNR Missense_Mutation p.E111K 0.50 probably_damaging(0.977) TCGA-EE-A3J5-06 1 152383374 152383374 C T CRNN Missense_Mutation p.D62N 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 1 152732182 152732182 C T KPRP Missense_Mutation p.P40S 0.30 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A3J5-06 1 153587777 153587777 C T S100A14 Silent p.G37G 0.44 TCGA-EE-A3J5-06 1 153955017 153955017 C A RAB13 Silent p.V158V 0.39 TCGA-EE-A3J5-06 1 154932194 154932194 G A PYGO2 Silent p.F94F 0.46 TCGA-EE-A3J5-06 1 155327174 155327174 C T ASH1L Missense_Mutation p.E2330K 0.30 tolerated_low_confidence(0.07) probably_damaging(0.972) TCGA-EE-A3J5-06 1 156145008 156145008 C T SEMA4A Silent p.T522T 0.31 TCGA-EE-A3J5-06 1 156622102 156622102 G A BCAN Missense_Mutation p.E454K 0.23 tolerated(0.87) benign(0.025) TCGA-EE-A3J5-06 1 156834561 156834561 C T NTRK1 Missense_Mutation p.A110V 0.49 deleterious(0.05) benign(0.026) TCGA-EE-A3J5-06 1 156851341 156851341 G A NTRK1 Silent p.R766R 0.37 TCGA-EE-A3J5-06 1 157490941 157490941 C T FCRL5 Missense_Mutation p.G794E 0.39 tolerated(0.62) possibly_damaging(0.597) TCGA-EE-A3J5-06 1 157771924 157771924 C T FCRL1 Missense_Mutation p.D223N 0.46 deleterious(0.04) possibly_damaging(0.687) TCGA-EE-A3J5-06 1 158227566 158227566 C T CD1A 3'UTR 0.33 TCGA-EE-A3J5-06 1 158326480 158326480 C T CD1E Intron 0.31 TCGA-EE-A3J5-06 1 158390564 158390564 G A OR10K2 Silent p.F31F 0.38 TCGA-EE-A3J5-06 1 158436237 158436237 G A OR10K1 Missense_Mutation p.E296K 0.35 deleterious(0.02) possibly_damaging(0.69) TCGA-EE-A3J5-06 1 158587379 158587379 C T SPTA1 Splice_Site p.X2183_splice 0.33 TCGA-EE-A3J5-06 1 15890581 15890581 C T DNAJC16 Missense_Mutation p.P499L 0.29 tolerated(0.05) benign(0.033) TCGA-EE-A3J5-06 1 158908923 158908923 C T PYHIN1 Silent p.S155S 0.33 TCGA-EE-A3J5-06 1 15904213 15904213 C T AGMAT Silent p.G289G 0.30 TCGA-EE-A3J5-06 1 159505786 159505786 C T OR10J5 Silent p.K4K 0.40 TCGA-EE-A3J5-06 1 159779289 159779289 C T FCRL6 Silent p.S234S 0.36 TCGA-EE-A3J5-06 1 159847190 159847190 G A CCDC19 Silent p.I369I 0.41 TCGA-EE-A3J5-06 1 159854279 159854279 C T CCDC19 Missense_Mutation p.E282K 0.32 deleterious(0) probably_damaging(0.936) TCGA-EE-A3J5-06 1 160091024 160091024 C T ATP1A2 Nonsense_Mutation p.Q54* 0.31 TCGA-EE-A3J5-06 1 160105072 160105072 G A ATP1A2 Missense_Mutation p.G701E 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J5-06 1 16095058 16095058 C T FBLIM1 Silent p.P158P 0.17 TCGA-EE-A3J5-06 1 161049390 161049390 G A PVRL4 Silent p.L143L 0.47 TCGA-EE-A3J5-06 1 161069161 161069161 G A KLHDC9 Missense_Mutation p.A185T 0.35 tolerated(0.3) benign(0.006) TCGA-EE-A3J5-06 1 161161952 161161952 G A ADAMTS4 Missense_Mutation p.R664C 0.40 deleterious(0.01) possibly_damaging(0.79) TCGA-EE-A3J5-06 1 161600982 161600982 C T FCGR3B Missense_Mutation p.G4E 0.33 deleterious_low_confidence(0.03) benign(0.004) TCGA-EE-A3J5-06 1 163042242 163042242 A G RGS4 Silent p.E131E 0.46 TCGA-EE-A3J5-06 1 16456036 16456036 G A EPHA2 Silent p.F906F 0.38 TCGA-EE-A3J5-06 1 16461641 16461641 G A EPHA2 Missense_Mutation p.S491F 0.31 tolerated(0.06) benign(0.094) TCGA-EE-A3J5-06 1 166958650 166958650 G A MAEL Missense_Mutation p.E21K 0.23 deleterious(0.04) possibly_damaging(0.645) TCGA-EE-A3J5-06 1 16725845 16725845 C T SPATA21 Missense_Mutation p.G449E 0.38 deleterious(0.02) possibly_damaging(0.567) TCGA-EE-A3J5-06 1 167404559 167404559 C T CD247 Intron 0.28 TCGA-EE-A3J5-06 1 167666954 167666954 G A RCSD1 Missense_Mutation p.E365K 0.18 tolerated(0.16) benign(0.363) TCGA-EE-A3J5-06 1 169510044 169510044 G A F5 Silent p.S1428S 0.29 TCGA-EE-A3J5-06 1 170007562 170007562 A G KIFAP3 Missense_Mutation p.V129A 0.27 tolerated(0.73) benign(0.257) TCGA-EE-A3J5-06 1 171251218 171251218 C T FMO1 Missense_Mutation p.S310F 0.28 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3J5-06 1 171605128 171605128 C T MYOC Silent p.K484K 0.33 TCGA-EE-A3J5-06 1 171607853 171607853 C T MYOC Nonsense_Mutation p.W205* 0.27 TCGA-EE-A3J5-06 1 172390029 172390029 G A C1orf105 Missense_Mutation p.E2K 0.33 tolerated(0.13) possibly_damaging(0.486) TCGA-EE-A3J5-06 1 172628557 172628557 G A FASLG Silent p.K72K 0.30 TCGA-EE-A3J5-06 1 17314703 17314703 G A ATP13A2 Missense_Mutation p.S930L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 1 173702865 173702865 C T KLHL20 Nonsense_Mutation p.R13* 0.46 TCGA-EE-A3J5-06 1 175362950 175362950 G A TNR Missense_Mutation p.S441F 0.33 deleterious(0.05) possibly_damaging(0.654) TCGA-EE-A3J5-06 1 176563857 176563857 G - PAPPA2 Frame_Shift_Del p.G373Dfs*17 0.24 TCGA-EE-A3J5-06 1 176738746 176738746 G A PAPPA2 Missense_Mutation p.E1443K 0.30 tolerated(0.14) benign(0.007) TCGA-EE-A3J5-06 1 176905426 176905426 G A ASTN1 Missense_Mutation p.L820F 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 1 176905427 176905427 T A ASTN1 Missense_Mutation p.K819N 0.36 deleterious(0) benign(0.1) TCGA-EE-A3J5-06 1 176934337 176934337 G A ASTN1 Silent p.D520D 0.36 TCGA-EE-A3J5-06 1 177249843 177249843 G A BRINP2 Missense_Mutation p.D511N 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 1 177249950 177249950 G A BRINP2 Nonsense_Mutation p.W546* 0.32 TCGA-EE-A3J5-06 1 177250409 177250409 C T BRINP2 Silent p.D699D 0.39 TCGA-EE-A3J5-06 1 177250448 177250448 C T BRINP2 Silent p.S712S 0.39 TCGA-EE-A3J5-06 1 179337973 179337973 C T AXDND1 Missense_Mutation p.R46C 0.23 tolerated(0.18) possibly_damaging(0.633) TCGA-EE-A3J5-06 1 179983358 179983358 C T CEP350 Silent p.H590H 0.32 TCGA-EE-A3J5-06 1 180158693 180158693 C T QSOX1 Missense_Mutation p.P342S 0.39 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J5-06 1 180905572 180905572 C T KIAA1614 Missense_Mutation p.P843S 0.37 tolerated(0.13) benign(0.127) TCGA-EE-A3J5-06 1 181549757 181549757 C T CACNA1E Missense_Mutation p.H266Y 0.44 tolerated(0.48) benign(0.415) TCGA-EE-A3J5-06 1 181701899 181701899 G A CACNA1E Missense_Mutation p.D893N 0.32 tolerated(0.13) possibly_damaging(0.539) TCGA-EE-A3J5-06 1 182555844 182555844 A G RNASEL Missense_Mutation p.V33A 0.42 deleterious(0.04) benign(0.096) TCGA-EE-A3J5-06 1 183097779 183097779 C T LAMC1 Silent p.N1058N 0.25 TCGA-EE-A3J5-06 1 183498158 183498158 C T SMG7 Missense_Mutation p.L230F 0.26 tolerated(0.39) possibly_damaging(0.615) TCGA-EE-A3J5-06 1 183599703 183599703 G A ARPC5 Nonsense_Mutation p.Q99* 0.37 TCGA-EE-A3J5-06 1 18702816 18702816 G A IGSF21 Missense_Mutation p.G343E 0.23 tolerated(0.09) possibly_damaging(0.644) TCGA-EE-A3J5-06 1 19175919 19175919 G A TAS1R2 Silent p.P461P 0.28 TCGA-EE-A3J5-06 1 19175920 19175920 G A TAS1R2 Missense_Mutation p.P461L 0.28 deleterious(0.03) possibly_damaging(0.656) TCGA-EE-A3J5-06 1 19180849 19180849 G A TAS1R2 Missense_Mutation p.S372F 0.39 tolerated(0.28) benign(0.055) TCGA-EE-A3J5-06 1 19181459 19181459 C T TAS1R2 Missense_Mutation p.D169N 0.47 tolerated(0.1) benign(0.341) TCGA-EE-A3J5-06 1 192321314 192321314 G A RGS21 Missense_Mutation p.E76K 0.21 tolerated(0.08) possibly_damaging(0.633) TCGA-EE-A3J5-06 1 196642283 196642283 G A CFH Silent p.R78R 0.40 TCGA-EE-A3J5-06 1 196748950 196748950 G A CFHR3 Missense_Mutation p.E93K 0.36 tolerated(0.23) possibly_damaging(0.68) TCGA-EE-A3J5-06 1 197390881 197390881 C T CRB1 Silent p.G641G 0.29 TCGA-EE-A3J5-06 1 198678813 198678813 C T PTPRC Intron 0.28 TCGA-EE-A3J5-06 1 200948673 200948673 G A KIF21B Missense_Mutation p.R1384W 0.47 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 1 201012412 201012412 G A CACNA1S Missense_Mutation p.S1682F 0.30 tolerated_low_confidence(0.14) benign(0.003) TCGA-EE-A3J5-06 1 201047153 201047153 G A CACNA1S Silent p.Y491Y 0.42 TCGA-EE-A3J5-06 1 201081345 201081345 C T CACNA1S Silent p.R41R 0.34 TCGA-EE-A3J5-06 1 201352246 201352246 C T LAD1 Missense_Mutation p.E448K 0.34 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A3J5-06 1 203138400 203138400 C T MYBPH Missense_Mutation p.S404N 0.20 deleterious(0.04) possibly_damaging(0.826) TCGA-EE-A3J5-06 1 203677134 203677134 T G ATP2B4 Missense_Mutation p.Y487D 0.31 deleterious(0.01) possibly_damaging(0.791) TCGA-EE-A3J5-06 1 204416613 204416613 C T PIK3C2B Missense_Mutation p.E814K 0.32 tolerated(0.68) benign(0.16) TCGA-EE-A3J5-06 1 205492641 205492641 C T CDK18 Missense_Mutation p.P54L 0.16 tolerated_low_confidence(0.18) benign(0.003) TCGA-EE-A3J5-06 1 206619584 206619584 C T SRGAP2 Missense_Mutation p.P594S 0.35 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 1 207087359 207087359 G A FAIM3 Missense_Mutation p.P40S 0.41 deleterious(0.02) possibly_damaging(0.779) TCGA-EE-A3J5-06 1 207641903 207641903 G A CR2 Missense_Mutation p.M159I 0.41 tolerated(0.22) benign(0.005) TCGA-EE-A3J5-06 1 207700202 207700202 G A CR1 Missense_Mutation p.D331N 0.76 tolerated(0.5) possibly_damaging(0.865) TCGA-EE-A3J5-06 1 209974602 209974602 C T IRF6 Missense_Mutation p.E53K 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A3J5-06 1 210415346 210415346 T C SERTAD4 Silent p.D245D 0.42 TCGA-EE-A3J5-06 1 210857019 210857019 C T KCNH1 Silent p.S858S 0.27 TCGA-EE-A3J5-06 1 210977405 210977405 G A KCNH1 Silent p.F522F 0.45 TCGA-EE-A3J5-06 1 212002626 212002626 A G LPGAT1 Silent p.L5L 0.37 TCGA-EE-A3J5-06 1 212798699 212798699 G A FAM71A Silent p.R160R 0.27 TCGA-EE-A3J5-06 1 212799041 212799041 G A FAM71A Silent p.G274G 0.35 TCGA-EE-A3J5-06 1 214170675 214170675 C T PROX1 Missense_Mutation p.S266L 0.38 tolerated(0.36) benign(0.411) TCGA-EE-A3J5-06 1 214813291 214813291 T C CENPF Missense_Mutation p.L537S 0.32 probably_damaging(0.956) TCGA-EE-A3J5-06 1 214818639 214818639 C T CENPF Missense_Mutation p.S1909L 0.40 benign(0.007) TCGA-EE-A3J5-06 1 216496835 216496835 C T USH2A Missense_Mutation p.E511K 0.32 probably_damaging(0.997) TCGA-EE-A3J5-06 1 216850624 216850624 G A ESRRG Missense_Mutation p.P94L 0.39 tolerated(0.32) benign(0.001) TCGA-EE-A3J5-06 1 217793777 217793777 C T GPATCH2 Missense_Mutation p.E41K 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 1 220247342 220247342 C T BPNT1 Silent p.R64R 0.37 TCGA-EE-A3J5-06 1 220340700 220340700 C A RAB3GAP2 Nonsense_Mutation p.E1008* 0.18 TCGA-EE-A3J5-06 1 220805599 220805599 C T MARK1 Nonsense_Mutation p.Q356* 0.22 TCGA-EE-A3J5-06 1 220809274 220809274 G A MARK1 Missense_Mutation p.R459Q 0.40 deleterious(0.04) benign(0.118) TCGA-EE-A3J5-06 1 221912312 221912312 G A DUSP10 Silent p.L259L 0.35 TCGA-EE-A3J5-06 1 223285825 223285825 G A TLR5 Silent p.F183F 0.19 TCGA-EE-A3J5-06 1 224495718 224495718 G A NVL Missense_Mutation p.P197L 0.21 tolerated(0.32) benign(0) TCGA-EE-A3J5-06 1 224581617 224581617 T C WDR26 Missense_Mutation p.I625V 0.51 tolerated(0.5) benign(0.021) TCGA-EE-A3J5-06 1 226173191 226173191 A G SDE2 Missense_Mutation p.F390L 0.34 tolerated(0.06) benign(0.438) TCGA-EE-A3J5-06 1 226923768 226923768 C T ITPKB Silent p.G464G 0.18 TCGA-EE-A3J5-06 1 227333254 227333254 G A CDC42BPA Missense_Mutation p.P360L 0.42 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 1 227923018 227923018 G A JMJD4 Missense_Mutation p.P32L 0.44 deleterious_low_confidence(0.01) benign(0.196) TCGA-EE-A3J5-06 1 227923019 227923019 G A JMJD4 Missense_Mutation p.P32S 0.41 tolerated_low_confidence(0.05) benign(0.067) TCGA-EE-A3J5-06 1 231475563 231475563 C T SPRTN Silent p.I90I 0.38 TCGA-EE-A3J5-06 1 232650179 232650179 C T SIPA1L2 Missense_Mutation p.E303K 0.33 tolerated(0.06) possibly_damaging(0.679) TCGA-EE-A3J5-06 1 233105701 233105701 A G NTPCR Missense_Mutation p.E114G 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 1 23357066 23357066 C T KDM1A Silent p.P152P 0.34 TCGA-EE-A3J5-06 1 234458822 234458822 C T SLC35F3 Silent p.L436L 0.23 TCGA-EE-A3J5-06 1 23637381 23637382 AG - HNRNPR Frame_Shift_Del p.Y493Lfs*4 0.15 TCGA-EE-A3J5-06 1 236703877 236703877 G A LGALS8 Missense_Mutation p.G120E 0.24 deleterious(0.03) possibly_damaging(0.767) TCGA-EE-A3J5-06 1 236748463 236748463 T A HEATR1 Missense_Mutation p.K701N 0.42 deleterious(0.05) probably_damaging(0.98) TCGA-EE-A3J5-06 1 23696236 23696236 T C C1orf213 3'UTR 0.33 TCGA-EE-A3J5-06 1 237632412 237632412 C T RYR2 Missense_Mutation p.R545C 0.34 probably_damaging(0.919) TCGA-EE-A3J5-06 1 240255646 240255646 G A FMN2 Silent p.R79R 0.47 TCGA-EE-A3J5-06 1 24124654 24124654 G A GALE Silent p.L102L 0.27 TCGA-EE-A3J5-06 1 241753347 241753347 T A KMO Missense_Mutation p.F378I 0.24 tolerated(0.18) benign(0.005) TCGA-EE-A3J5-06 1 24201692 24201692 G A CNR2 Missense_Mutation p.P139L 0.41 tolerated(0.28) benign(0.01) TCGA-EE-A3J5-06 1 242023858 242023858 A G EXO1 Missense_Mutation p.T266A 0.49 deleterious(0.04) benign(0.001) TCGA-EE-A3J5-06 1 242253128 242253128 G A PLD5 3'UTR 0.18 TCGA-EE-A3J5-06 1 245852057 245852057 C T KIF26B Silent p.S1924S 0.21 TCGA-EE-A3J5-06 1 247320170 247320170 G A ZNF124 Missense_Mutation p.H190Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 1 247473702 247473702 G A ZNF496 Silent p.S236S 0.21 TCGA-EE-A3J5-06 1 248058928 248058928 C T OR2W3 Silent p.L14L 0.40 TCGA-EE-A3J5-06 1 248112192 248112192 C T OR2L8 Silent p.F11F 0.28 TCGA-EE-A3J5-06 1 248201572 248201572 G A OR2L2 Translation_Start_Site p.M1? 0.32 deleterious(0) benign(0.167) TCGA-EE-A3J5-06 1 248224630 248224630 C T OR2L3 Missense_Mutation p.S216F 0.68 deleterious(0) possibly_damaging(0.529) TCGA-EE-A3J5-06 1 248366914 248366914 C T OR2M3 Missense_Mutation p.P182L 0.25 deleterious(0.05) possibly_damaging(0.864) TCGA-EE-A3J5-06 1 248458536 248458536 G A OR2T12 Silent p.A115A 0.24 TCGA-EE-A3J5-06 1 248487415 248487415 G A OR2M7 Silent p.G152G 0.29 TCGA-EE-A3J5-06 1 248569723 248569723 C T OR2T1 Missense_Mutation p.S143F 0.28 deleterious(0) probably_damaging(0.95) TCGA-EE-A3J5-06 1 248616729 248616729 C T OR2T2 Missense_Mutation p.P211S 0.17 deleterious(0) possibly_damaging(0.713) TCGA-EE-A3J5-06 1 248652009 248652009 G A OR2T5 Silent p.L40L 0.26 TCGA-EE-A3J5-06 1 2537024 2537024 G C MMEL1 Nonsense_Mutation p.Y263* 0.33 TCGA-EE-A3J5-06 1 25599012 25599012 G A RHD 5'UTR 0.18 TCGA-EE-A3J5-06 1 26515862 26515862 G A CNKSR1 Silent p.R655R 0.33 TCGA-EE-A3J5-06 1 26586192 26586192 A G CEP85 Missense_Mutation p.K414E 0.38 deleterious(0.01) possibly_damaging(0.492) TCGA-EE-A3J5-06 1 26663805 26663805 G A AIM1L Missense_Mutation p.P363L 0.42 tolerated(0.19) benign(0.174) TCGA-EE-A3J5-06 1 27269235 27269235 T C NUDC Missense_Mutation p.Y172H 0.40 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A3J5-06 1 28605652 28605652 G A SESN2 Missense_Mutation p.R419Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 1 28605653 28605653 G A SESN2 Silent p.R419R 0.41 TCGA-EE-A3J5-06 1 29040629 29040629 C T GMEB1 Missense_Mutation p.H356Y 0.30 tolerated(1) benign(0.029) TCGA-EE-A3J5-06 1 29542631 29542631 G A MECR Missense_Mutation p.P98S 0.26 tolerated(0.1) possibly_damaging(0.837) TCGA-EE-A3J5-06 1 29611288 29611288 C T PTPRU Missense_Mutation p.S742L 0.21 deleterious(0.01) possibly_damaging(0.604) TCGA-EE-A3J5-06 1 29618381 29618381 G A PTPRU Silent p.P783P 0.30 TCGA-EE-A3J5-06 1 31898701 31898701 C T SERINC2 Missense_Mutation p.S193F 0.48 deleterious(0) probably_damaging(0.932) TCGA-EE-A3J5-06 1 32573653 32573653 C T KPNA6 5'UTR 0.42 TCGA-EE-A3J5-06 1 32687978 32687978 G A EIF3I 5'UTR 0.23 TCGA-EE-A3J5-06 1 33478945 33478945 C T AK2 Missense_Mutation p.R186H 0.29 deleterious(0) benign(0.028) TCGA-EE-A3J5-06 1 34089037 34089037 C T CSMD2 Silent p.Q1845Q 0.26 TCGA-EE-A3J5-06 1 35259982 35259982 G A GJA4 Silent p.T56T 0.31 TCGA-EE-A3J5-06 1 35484864 35484864 G C ZMYM6 Intron 0.57 TCGA-EE-A3J5-06 1 36384808 36384808 G A AGO1 Silent p.L806L 0.35 TCGA-EE-A3J5-06 1 3669023 3669023 C T CCDC27 5'UTR 0.17 TCGA-EE-A3J5-06 1 36748198 36748198 C T THRAP3 Missense_Mutation p.R12C 0.37 unknown(0) TCGA-EE-A3J5-06 1 36941030 36941030 C T CSF3R Silent p.L103L 0.47 TCGA-EE-A3J5-06 1 39802258 39802258 C T MACF1 Intron 0.33 TCGA-EE-A3J5-06 1 39926465 39926465 C T MACF1 Silent p.S5115S 0.28 TCGA-EE-A3J5-06 1 40035300 40035300 A G PABPC4 Silent p.F235F 0.49 TCGA-EE-A3J5-06 1 40131848 40131848 C T NT5C1A Missense_Mutation p.E66K 0.45 tolerated(0.25) benign(0.014) TCGA-EE-A3J5-06 1 40771858 40771858 C T COL9A2 Missense_Mutation p.G337D 0.33 deleterious(0) probably_damaging(0.982) TCGA-EE-A3J5-06 1 41483316 41483316 G A SLFNL1 Silent p.V316V 0.23 TCGA-EE-A3J5-06 1 43649275 43649275 C T WDR65 Missense_Mutation p.P163L 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A3J5-06 1 43777489 43777489 C A TIE1 Nonsense_Mutation p.S494* 0.41 TCGA-EE-A3J5-06 1 43777747 43777747 G A TIE1 Silent p.G525G 0.35 TCGA-EE-A3J5-06 1 43784950 43784950 G A TIE1 Silent p.E989E 0.28 TCGA-EE-A3J5-06 1 44084349 44084349 C T PTPRF Missense_Mutation p.L1474F 0.40 tolerated(0.4) benign(0.015) TCGA-EE-A3J5-06 1 44086509 44086509 G A PTPRF Missense_Mutation p.D1789N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 1 45316635 45316635 G A EIF2B3 Silent p.L449L 0.27 TCGA-EE-A3J5-06 1 45960789 45960789 G A CCDC163P 3'Flank 0.21 TCGA-EE-A3J5-06 1 45965908 45965908 C T MMACHC 5'UTR 0.32 TCGA-EE-A3J5-06 1 46158923 46158923 T A TMEM69 Missense_Mutation p.D30E 0.39 tolerated(0.79) benign(0.007) TCGA-EE-A3J5-06 1 47042306 47042306 C T MKNK1 Silent p.G85G 0.16 TCGA-EE-A3J5-06 1 47399629 47399629 G A CYP4A11 Missense_Mutation p.S404F 0.21 deleterious(0.02) benign(0.236) TCGA-EE-A3J5-06 1 47515726 47515726 G A CYP4X1 Silent p.L470L 0.27 TCGA-EE-A3J5-06 1 47746375 47746375 C T STIL Missense_Mutation p.M585I 0.43 tolerated(0.47) benign(0.002) TCGA-EE-A3J5-06 1 48694797 48694797 G A SLC5A9 Missense_Mutation p.G121E 0.44 tolerated_low_confidence(1) benign(0.007) TCGA-EE-A3J5-06 1 51768239 51768239 C T TTC39A Missense_Mutation p.G261E 0.21 deleterious(0) probably_damaging(0.924) TCGA-EE-A3J5-06 1 52343948 52343948 G A NRD1 Nonsense_Mutation p.R114* 0.36 TCGA-EE-A3J5-06 1 52343949 52343949 G A NRD1 Silent p.Y113Y 0.36 TCGA-EE-A3J5-06 1 53420459 53420459 G A SCP2 Missense_Mutation p.G127R 0.31 deleterious(0) benign(0.199) TCGA-EE-A3J5-06 1 53459247 53459247 C T SCP2 Intron 0.21 TCGA-EE-A3J5-06 1 53558273 53558273 G A SLC1A7 Silent p.I328I 0.42 TCGA-EE-A3J5-06 1 55078355 55078355 G A FAM151A Missense_Mutation p.P202S 0.39 tolerated(0.06) possibly_damaging(0.654) TCGA-EE-A3J5-06 1 55307316 55307316 A G C1orf177 Intron 0.36 TCGA-EE-A3J5-06 1 57340760 57340760 G A C8A Missense_Mutation p.E104K 0.35 deleterious(0) possibly_damaging(0.752) TCGA-EE-A3J5-06 1 57476371 57476371 G A DAB1 Silent p.S555S 0.53 TCGA-EE-A3J5-06 1 57489228 57489228 A C DAB1 Missense_Mutation p.F291V 0.32 deleterious(0.04) benign(0.341) TCGA-EE-A3J5-06 1 60377418 60377418 G A CYP2J2 Silent p.F182F 0.26 TCGA-EE-A3J5-06 1 60505798 60505798 G A C1orf87 Silent p.L180L 0.27 TCGA-EE-A3J5-06 1 60505799 60505799 G A C1orf87 Silent p.A179A 0.28 TCGA-EE-A3J5-06 1 61554129 61554129 C T NFIA Silent p.G157G 0.32 TCGA-EE-A3J5-06 1 6171884 6171884 C T CHD5 Missense_Mutation p.D1734N 0.41 deleterious(0.01) benign(0.089) TCGA-EE-A3J5-06 1 6185911 6185911 C T CHD5 Silent p.Q1362Q 0.32 TCGA-EE-A3J5-06 1 6219501 6219501 G A CHD5 Silent p.S94S 0.33 TCGA-EE-A3J5-06 1 62675743 62675743 G A L1TD1 Missense_Mutation p.E433K 0.35 tolerated(1) benign(0.005) TCGA-EE-A3J5-06 1 62740103 62740103 G A KANK4 Missense_Mutation p.P225S 0.37 tolerated(0.13) benign(0.002) TCGA-EE-A3J5-06 1 62740493 62740493 C T KANK4 Missense_Mutation p.V95M 0.40 tolerated(0.05) benign(0.423) TCGA-EE-A3J5-06 1 6310636 6310636 G A GPR153 Missense_Mutation p.S343F 0.33 deleterious(0.01) benign(0.429) TCGA-EE-A3J5-06 1 67147806 67147806 C T SGIP1 Missense_Mutation p.P357S 0.40 tolerated_low_confidence(0.72) possibly_damaging(0.641) TCGA-EE-A3J5-06 1 67206955 67206955 G A SGIP1 Missense_Mutation p.G767E 0.23 deleterious(0) possibly_damaging(0.898) TCGA-EE-A3J5-06 1 68896789 68896789 G A RPE65 Missense_Mutation p.P470L 0.39 deleterious(0.05) possibly_damaging(0.852) TCGA-EE-A3J5-06 1 75036823 75036823 G A C1orf173 Missense_Mutation p.S1524F 0.24 tolerated(0.06) probably_damaging(0.948) TCGA-EE-A3J5-06 1 75072354 75072354 C T C1orf173 Missense_Mutation p.E474K 0.37 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 1 7700579 7700579 G A CAMTA1 Silent p.T210T 0.46 TCGA-EE-A3J5-06 1 79101083 79101083 A T IFI44L Missense_Mutation p.D262V 0.24 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 1 8074056 8074056 G A ERRFI1 Silent p.F201F 0.42 TCGA-EE-A3J5-06 1 82408790 82408790 C T LPHN2 Missense_Mutation p.R179C 0.44 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 1 82434923 82434923 C T LPHN2 Missense_Mutation p.S845F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 1 84415548 84415548 C T TTLL7 Silent p.Q93Q 0.39 TCGA-EE-A3J5-06 1 84647985 84647985 G A PRKACB Missense_Mutation p.A118T 0.23 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 1 87012829 87012829 C T CLCA4 Silent p.F9F 0.23 TCGA-EE-A3J5-06 1 881810 881810 G A NOC2L Missense_Mutation p.S592F 0.32 deleterious(0) possibly_damaging(0.905) TCGA-EE-A3J5-06 1 91404473 91404473 T - ZNF644 Frame_Shift_Del p.K813Rfs*24 0.22 TCGA-EE-A3J5-06 1 92445271 92445271 C T BRDT Missense_Mutation p.S415F 0.22 tolerated(0.05) possibly_damaging(0.888) TCGA-EE-A3J5-06 1 94354692 94354692 G A GCLM Nonsense_Mutation p.Q227* 0.32 TCGA-EE-A3J5-06 1 94502305 94502305 G A ABCA4 Silent p.L1285L 0.24 TCGA-EE-A3J5-06 1 94514481 94514481 T A ABCA4 Nonsense_Mutation p.K896* 0.26 TCGA-EE-A3J5-06 20 10620599 10620599 G A JAG1 Silent p.F1068F 0.28 TCGA-EE-A3J5-06 20 13029643 13029643 G A SPTLC3 Silent p.E56E 0.38 TCGA-EE-A3J5-06 20 13090813 13090813 G A SPTLC3 Missense_Mutation p.R294Q 0.24 deleterious(0.01) benign(0.319) TCGA-EE-A3J5-06 20 13134709 13134709 G A SPTLC3 Missense_Mutation p.E447K 0.31 tolerated(0.24) benign(0.026) TCGA-EE-A3J5-06 20 13273072 13273072 G A ISM1 Missense_Mutation p.G280E 0.41 tolerated(0.18) probably_damaging(0.983) TCGA-EE-A3J5-06 20 13773846 13773846 C T NDUFAF5 Silent p.F116F 0.23 TCGA-EE-A3J5-06 20 1456760 1456760 G A SIRPB2 3'UTR 0.35 TCGA-EE-A3J5-06 20 1551649 1551649 C T SIRPB1 Missense_Mutation p.E296K 0.27 deleterious(0.02) possibly_damaging(0.866) TCGA-EE-A3J5-06 20 1551765 1551765 A G SIRPB1 Missense_Mutation p.V257A 0.24 deleterious(0.04) benign(0.133) TCGA-EE-A3J5-06 20 20553675 20553675 G A RALGAPA2 Silent p.I915I 0.43 TCGA-EE-A3J5-06 20 21143448 21143448 C T RP4-777D9.2 RNA 0.62 TCGA-EE-A3J5-06 20 2297848 2297848 C T TGM3 Silent p.V268V 0.45 TCGA-EE-A3J5-06 20 23548930 23548930 A G CST9L Missense_Mutation p.F53S 0.33 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J5-06 20 2380991 2380991 A G TGM6 Missense_Mutation p.N297S 0.35 deleterious(0) probably_damaging(0.968) TCGA-EE-A3J5-06 20 2413241 2413241 C T TGM6 Silent p.F691F 0.30 TCGA-EE-A3J5-06 20 2473350 2473350 G A ZNF343 Missense_Mutation p.S100L 0.37 deleterious(0.02) probably_damaging(0.928) TCGA-EE-A3J5-06 20 29632694 29632694 G A FRG1B Missense_Mutation p.G170E 0.05 deleterious(0.01) possibly_damaging(0.658) TCGA-EE-A3J5-06 20 3025446 3025446 C T GNRH2 Silent p.S92S 0.18 TCGA-EE-A3J5-06 20 31671416 31671416 G A BPIFB4 Missense_Mutation p.R138Q 0.33 tolerated_low_confidence(0.23) benign(0.003) TCGA-EE-A3J5-06 20 3277521 3277521 C T C20orf194 Missense_Mutation p.E669K 0.28 tolerated(0.39) possibly_damaging(0.779) TCGA-EE-A3J5-06 20 33509148 33509148 C T ACSS2 Silent p.S444S 0.30 TCGA-EE-A3J5-06 20 34021686 34021686 G A GDF5 3'UTR 0.37 TCGA-EE-A3J5-06 20 34025222 34025222 G A GDF5 Missense_Mutation p.R163C 0.38 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 20 34207622 34207622 A T SPAG4 Missense_Mutation p.E344V 0.31 deleterious(0) benign(0.101) TCGA-EE-A3J5-06 20 34263105 34263105 G A NFS1 Silent p.I270I 0.33 TCGA-EE-A3J5-06 20 34501989 34501989 C T PHF20 Silent p.S565S 0.39 TCGA-EE-A3J5-06 20 34773096 34773096 C T EPB41L1 Silent p.S208S 0.31 TCGA-EE-A3J5-06 20 35526232 35526232 T G SAMHD1 Missense_Mutation p.K580T 0.25 deleterious(0.04) benign(0.15) TCGA-EE-A3J5-06 20 35749387 35749387 C T MROH8 Missense_Mutation p.E704K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 20 35944873 35944873 C T MANBAL 3'UTR 0.53 TCGA-EE-A3J5-06 20 36031725 36031725 C T SRC Silent p.F518F 0.40 TCGA-EE-A3J5-06 20 36150759 36150759 G A NNAT Splice_Site p.X25_splice 0.29 TCGA-EE-A3J5-06 20 36640111 36640111 G A TTI1 Missense_Mutation p.S703F 0.29 deleterious(0) probably_damaging(0.951) TCGA-EE-A3J5-06 20 36784449 36784449 G A TGM2 Missense_Mutation p.P78L 0.32 tolerated(0.1) benign(0.023) TCGA-EE-A3J5-06 20 37214709 37214709 G A ADIG Nonsense_Mutation p.W54* 0.30 TCGA-EE-A3J5-06 20 37214710 37214710 G A ADIG Missense_Mutation p.E55K 0.30 deleterious(0.01) benign(0.442) TCGA-EE-A3J5-06 20 3846655 3846655 C T MAVS Missense_Mutation p.P495L 0.43 tolerated(0.17) benign(0.147) TCGA-EE-A3J5-06 20 39977320 39977320 C T LPIN3 Missense_Mutation p.P117L 0.42 tolerated(0.06) benign(0.075) TCGA-EE-A3J5-06 20 42341668 42341668 C T MYBL2 Silent p.V582V 0.40 TCGA-EE-A3J5-06 20 42680182 42680182 C T TOX2 Silent p.F216F 0.41 TCGA-EE-A3J5-06 20 42693496 42693496 A G TOX2 Missense_Mutation p.K320R 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3J5-06 20 43042351 43042351 G A HNF4A Missense_Mutation p.D135N 0.36 deleterious(0) benign(0.388) TCGA-EE-A3J5-06 20 43057110 43057110 G A HNF4A Missense_Mutation p.R422Q 0.40 tolerated_low_confidence(0.59) benign(0) TCGA-EE-A3J5-06 20 43836048 43836048 C T SEMG1 Missense_Mutation p.S37F 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A3J5-06 20 44839137 44839137 C T CDH22 Silent p.V365V 0.37 TCGA-EE-A3J5-06 20 45354628 45354628 G A SLC2A10 Missense_Mutation p.S318N 0.39 tolerated(0.54) possibly_damaging(0.832) TCGA-EE-A3J5-06 20 46264412 46264412 C T NCOA3 Missense_Mutation p.R487C 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 20 47990997 47990997 G A KCNB1 Missense_Mutation p.S367F 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 20 47991189 47991189 C T KCNB1 Missense_Mutation p.R303Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 20 48129637 48129637 C T PTGIS Missense_Mutation p.E396K 0.46 deleterious(0) possibly_damaging(0.892) TCGA-EE-A3J5-06 20 48600371 48600371 C A SNAI1 Missense_Mutation p.F31L 0.54 tolerated(0.57) benign(0.035) TCGA-EE-A3J5-06 20 49224982 49224982 G A FAM65C Silent p.I296I 0.33 TCGA-EE-A3J5-06 20 49225237 49225237 C T FAM65C Silent p.K237K 0.30 TCGA-EE-A3J5-06 20 49247283 49247283 C T FAM65C Silent p.R34R 0.52 TCGA-EE-A3J5-06 20 50235247 50235247 G A ATP9A Silent p.I768I 0.43 TCGA-EE-A3J5-06 20 50407847 50407847 C T SALL4 Missense_Mutation p.G392E 0.33 deleterious(0.02) probably_damaging(0.918) TCGA-EE-A3J5-06 20 51871950 51871950 G A TSHZ2 Silent p.L651L 0.29 TCGA-EE-A3J5-06 20 5282919 5282919 C T PROKR2 Missense_Mutation p.E308K 0.37 tolerated(0.12) possibly_damaging(0.544) TCGA-EE-A3J5-06 20 5283085 5283085 G A PROKR2 Silent p.F252F 0.33 TCGA-EE-A3J5-06 20 55012582 55012582 C T CASS4 Silent p.F133F 0.32 TCGA-EE-A3J5-06 20 55949720 55949720 G A RAE1 Missense_Mutation p.G295S 0.28 deleterious(0) probably_damaging(0.937) TCGA-EE-A3J5-06 20 55949721 55949721 G A RAE1 Missense_Mutation p.G295D 0.27 deleterious(0) probably_damaging(0.937) TCGA-EE-A3J5-06 20 57036095 57036095 G A APCDD1L Silent p.D419D 0.34 TCGA-EE-A3J5-06 20 57769235 57769235 C T ZNF831 Missense_Mutation p.S1054F 0.28 tolerated(1) benign(0) TCGA-EE-A3J5-06 20 58348385 58348385 T - PHACTR3 Frame_Shift_Del p.L268Pfs*99 0.27 TCGA-EE-A3J5-06 20 5903440 5903440 C T CHGB Missense_Mutation p.S217L 0.36 tolerated(0.59) benign(0.016) TCGA-EE-A3J5-06 20 5948085 5948085 C T MCM8 Silent p.I293I 0.43 TCGA-EE-A3J5-06 20 5952663 5952663 C T MCM8 Missense_Mutation p.P412S 0.20 deleterious(0.01) benign(0.069) TCGA-EE-A3J5-06 20 60470047 60470047 G A CDH4 Missense_Mutation p.A378T 0.36 tolerated(0.08) probably_damaging(0.963) TCGA-EE-A3J5-06 20 60578222 60578222 G A TAF4 Missense_Mutation p.S827L 0.36 probably_damaging(0.945) TCGA-EE-A3J5-06 20 61981924 61981924 G A CHRNA4 Missense_Mutation p.S280F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 20 76958 76958 C T DEFB125 Missense_Mutation p.P124L 0.35 deleterious(0.01) possibly_damaging(0.908) TCGA-EE-A3J5-06 20 858822 858822 C A ANGPT4 Missense_Mutation p.S401I 0.48 deleterious(0) probably_damaging(0.956) TCGA-EE-A3J5-06 20 870936 870936 C T ANGPT4 Missense_Mutation p.A129T 0.39 deleterious(0.03) benign(0.024) TCGA-EE-A3J5-06 20 8737765 8737765 C T PLCB1 Missense_Mutation p.H866Y 0.28 tolerated(0.23) benign(0.001) TCGA-EE-A3J5-06 20 944708 944708 C T RSPO4 Silent p.K155K 0.30 TCGA-EE-A3J5-06 20 9510431 9510431 C T LAMP5 Silent p.I269I 0.38 TCGA-EE-A3J5-06 20 9547019 9547019 G A PAK7 Nonsense_Mutation p.R335* 0.26 TCGA-EE-A3J5-06 20 9561572 9561572 G A PAK7 Silent p.I70I 0.35 TCGA-EE-A3J5-06 21 10908889 10908889 G A TPTE Missense_Mutation p.P486S 0.22 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J5-06 21 10916465 10916465 A G TPTE Missense_Mutation p.V394A 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 21 10934049 10934049 G A TPTE Missense_Mutation p.P310S 0.12 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J5-06 21 10934050 10934050 G A TPTE Silent p.V309V 0.12 TCGA-EE-A3J5-06 21 10996094 10996094 C T TPTE RNA 0.18 TCGA-EE-A3J5-06 21 11020917 11020917 C T BAGE2 Intron 0.16 TCGA-EE-A3J5-06 21 11058213 11058213 G A BAGE2 RNA 0.18 TCGA-EE-A3J5-06 21 15579187 15579187 G A LIPI Nonsense_Mutation p.Q20* 0.49 TCGA-EE-A3J5-06 21 17962643 17962643 G A MIR125B2 RNA 0.19 TCGA-EE-A3J5-06 21 22746188 22746188 G A NCAM2 Silent p.L350L 0.38 TCGA-EE-A3J5-06 21 28296451 28296451 C T ADAMTS5 Missense_Mutation p.G905E 0.21 tolerated(1) benign(0.02) TCGA-EE-A3J5-06 21 30723990 30723990 C T BACH1-IT1 RNA 0.24 TCGA-EE-A3J5-06 21 31812855 31812855 C T KRTAP15-1 Silent p.S70S 0.29 TCGA-EE-A3J5-06 21 36171749 36171749 C T RUNX1 Silent p.Q272Q 0.31 TCGA-EE-A3J5-06 21 37603262 37603262 G A DOPEY2 Missense_Mutation p.G727E 0.32 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 21 39672006 39672006 A G KCNJ15 Missense_Mutation p.K275E 0.34 tolerated(0.32) benign(0.252) TCGA-EE-A3J5-06 21 40795370 40795370 T G LCA5L Silent p.S123S 0.27 TCGA-EE-A3J5-06 21 41496137 41496137 G A DSCAM Silent p.S1227S 0.30 TCGA-EE-A3J5-06 21 42748916 42748916 C T MX2 Missense_Mutation p.S28F 0.27 tolerated_low_confidence(0.86) benign(0) TCGA-EE-A3J5-06 21 43221640 43221640 C T PRDM15 Silent p.Q1428Q 0.31 TCGA-EE-A3J5-06 21 43309289 43309289 A G C2CD2 Missense_Mutation p.S679P 0.26 tolerated(0.26) benign(0.012) TCGA-EE-A3J5-06 21 43309290 43309290 G A C2CD2 Silent p.L678L 0.26 TCGA-EE-A3J5-06 21 44188388 44188388 G A PDE9A Missense_Mutation p.E483K 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 21 45837850 45837850 T C TRPM2 Missense_Mutation p.W1063R 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 21 45959331 45959331 G A KRTAP10-1 Missense_Mutation p.L235F 0.21 deleterious(0.01) unknown(0) TCGA-EE-A3J5-06 21 45959788 45959788 C T KRTAP10-1 Silent p.Q82Q 0.40 TCGA-EE-A3J5-06 21 45971254 45971254 G A KRTAP10-2 Missense_Mutation p.P30S 0.35 tolerated(0.15) benign(0.046) TCGA-EE-A3J5-06 21 46011787 46011787 G T KRTAP10-6 Silent p.P193P 0.09 TCGA-EE-A3J5-06 21 46308785 46308785 C T ITGB2 Missense_Mutation p.E635K 0.23 tolerated(0.57) benign(0.004) TCGA-EE-A3J5-06 21 46595918 46595918 C A ADARB1 Missense_Mutation p.T101N 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J5-06 21 47535924 47535924 G A COL6A2 Missense_Mutation p.G286E 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 21 47552017 47552017 G A COL6A2 Missense_Mutation p.D871N 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 21 47860906 47860906 G A PCNT Missense_Mutation p.G3178R 0.24 probably_damaging(0.995) TCGA-EE-A3J5-06 21 47860907 47860907 G A PCNT Missense_Mutation p.G3178E 0.26 probably_damaging(0.993) TCGA-EE-A3J5-06 21 47959800 47959800 C T DIP2A Silent p.S644S 0.19 TCGA-EE-A3J5-06 22 16287388 16287388 C T POTEH Missense_Mutation p.M166I 0.52 tolerated(0.06) benign(0.002) TCGA-EE-A3J5-06 22 16449209 16449209 C T OR11H1 Missense_Mutation p.R199Q 0.30 deleterious(0) benign(0) TCGA-EE-A3J5-06 22 17280821 17280821 C T XKR3 Silent p.T143T 0.34 TCGA-EE-A3J5-06 22 17619146 17619146 C A CECR5 Missense_Mutation p.R346L 0.38 tolerated(0.32) benign(0.004) TCGA-EE-A3J5-06 22 18029071 18029071 C T CECR2 Missense_Mutation p.S1344F 0.31 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-EE-A3J5-06 22 18613844 18613844 G A TUBA8 Missense_Mutation p.D431N 0.37 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A3J5-06 22 19076956 19076956 G A DGCR2 Nonsense_Mutation p.Q43* 0.32 TCGA-EE-A3J5-06 22 19776432 19776432 G A GNB1L Missense_Mutation p.R262W 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 22 20970723 20970723 T G SMPD4P1 RNA 0.37 TCGA-EE-A3J5-06 22 21174864 21174864 G A PI4KA Silent p.L164L 0.35 TCGA-EE-A3J5-06 22 21384494 21384494 G A SLC7A4 Missense_Mutation p.L377F 0.26 tolerated(0.11) possibly_damaging(0.651) TCGA-EE-A3J5-06 22 22051245 22051245 C T PPIL2 3'UTR 0.38 TCGA-EE-A3J5-06 22 22673403 22673403 C T IGLV5-52 Missense_Mutation p.R66W 0.38 tolerated(0.09) benign(0.229) TCGA-EE-A3J5-06 22 22697965 22697965 C T IGLV9-49 Missense_Mutation p.R85C 0.33 deleterious(0.02) possibly_damaging(0.901) TCGA-EE-A3J5-06 22 23653976 23653976 C T BCR Missense_Mutation p.S1092F 0.30 deleterious(0) benign(0.025) TCGA-EE-A3J5-06 22 23653977 23653977 C T BCR Silent p.S1092S 0.29 TCGA-EE-A3J5-06 22 23657659 23657659 C T BCR Missense_Mutation p.P1256S 0.26 tolerated(0.35) possibly_damaging(0.641) TCGA-EE-A3J5-06 22 24085876 24085876 G A ZNF70 3'UTR 0.35 TCGA-EE-A3J5-06 22 24451496 24451496 C T CABIN1 Nonsense_Mutation p.Q323* 0.31 TCGA-EE-A3J5-06 22 24515547 24515547 G A CABIN1 Missense_Mutation p.R1505Q 0.42 deleterious(0.01) probably_damaging(0.929) TCGA-EE-A3J5-06 22 24515548 24515548 G A CABIN1 Silent p.R1505R 0.42 TCGA-EE-A3J5-06 22 24530369 24530369 C T CABIN1 Missense_Mutation p.T1578I 0.42 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A3J5-06 22 25275471 25275471 C T SGSM1 Silent p.I546I 0.21 TCGA-EE-A3J5-06 22 26422421 26422421 G A MYO18B Missense_Mutation p.E2161K 0.28 tolerated(0.07) benign(0.094) TCGA-EE-A3J5-06 22 26423416 26423416 G A MYO18B Silent p.L2492L 0.43 TCGA-EE-A3J5-06 22 26707903 26707903 G A SEZ6L Nonsense_Mutation p.W617* 0.27 TCGA-EE-A3J5-06 22 26830118 26830118 C T ASPHD2 Silent p.F179F 0.49 TCGA-EE-A3J5-06 22 29885003 29885003 G A NEFH Silent p.E458E 0.31 TCGA-EE-A3J5-06 22 30197997 30197997 G A ASCC2 Silent p.D518D 0.54 TCGA-EE-A3J5-06 22 30415681 30415681 T A MTMR3 Missense_Mutation p.L678H 0.38 deleterious(0.03) probably_damaging(0.977) TCGA-EE-A3J5-06 22 30824461 30824461 C T MTFP1 Silent p.F147F 0.37 TCGA-EE-A3J5-06 22 31003191 31003191 G A TCN2 5'UTR 0.28 TCGA-EE-A3J5-06 22 31042818 31042818 C T SLC35E4 Missense_Mutation p.H285Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 22 31484001 31484001 C T SMTN Silent p.I34I 0.50 TCGA-EE-A3J5-06 22 31521821 31521821 C T INPP5J Intron 0.19 TCGA-EE-A3J5-06 22 31522468 31522468 G A INPP5J Missense_Mutation p.A92T 0.25 deleterious(0.03) possibly_damaging(0.894) TCGA-EE-A3J5-06 22 31536404 31536404 G A PLA2G3 5'UTR 0.35 TCGA-EE-A3J5-06 22 32829755 32829755 G A BPIFC Missense_Mutation p.S310F 0.28 tolerated(0.08) benign(0.144) TCGA-EE-A3J5-06 22 32894359 32894359 A G FBXO7 Missense_Mutation p.T471A 0.22 tolerated(0.75) benign(0.002) TCGA-EE-A3J5-06 22 34000545 34000545 C T LARGE Splice_Site p.X164_splice 0.33 TCGA-EE-A3J5-06 22 35743271 35743271 C T TOM1 3'UTR 0.38 TCGA-EE-A3J5-06 22 36113938 36113938 G A APOL5 Missense_Mutation p.G7E 0.26 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-EE-A3J5-06 22 36116662 36116662 G A APOL5 Missense_Mutation p.G35R 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A3J5-06 22 36900296 36900296 G A FOXRED2 Missense_Mutation p.P300S 0.26 tolerated(0.26) benign(0) TCGA-EE-A3J5-06 22 36902049 36902049 G A FOXRED2 Nonsense_Mutation p.Q141* 0.40 TCGA-EE-A3J5-06 22 37395976 37395976 G A TEX33 Missense_Mutation p.S180L 0.55 tolerated(0.1) possibly_damaging(0.504) TCGA-EE-A3J5-06 22 37893028 37893028 C T CARD10 Missense_Mutation p.E649K 0.33 tolerated(0.07) benign(0.437) TCGA-EE-A3J5-06 22 37903859 37903859 C T CARD10 Missense_Mutation p.E390K 0.29 deleterious(0) benign(0.017) TCGA-EE-A3J5-06 22 38028043 38028043 C T GGA1 Silent p.F523F 0.43 TCGA-EE-A3J5-06 22 38468552 38468552 A T PICK1 Nonsense_Mutation p.K209* 0.31 TCGA-EE-A3J5-06 22 39218644 39218644 G A NPTXR Silent p.F491F 0.32 TCGA-EE-A3J5-06 22 39381963 39381963 C T APOBEC3B Silent p.F107F 0.38 TCGA-EE-A3J5-06 22 39709898 39709898 G A RPL3 Intron 0.26 TCGA-EE-A3J5-06 22 39908021 39908021 C T MIEF1 Silent p.T104T 0.34 TCGA-EE-A3J5-06 22 39918129 39918129 G A ATF4 Missense_Mutation p.R193K 0.37 tolerated(0.68) benign(0.005) TCGA-EE-A3J5-06 22 39918130 39918130 G A ATF4 Silent p.R193R 0.36 TCGA-EE-A3J5-06 22 41318338 41318338 T C XPNPEP3 Missense_Mutation p.F353L 0.37 deleterious(0.03) benign(0.314) TCGA-EE-A3J5-06 22 41654018 41654018 G A RANGAP1 Silent p.P236P 0.32 TCGA-EE-A3J5-06 22 41742206 41742206 C T ZC3H7B Silent p.L553L 0.36 TCGA-EE-A3J5-06 22 42607229 42607229 G A TCF20 Silent p.S1361S 0.30 TCGA-EE-A3J5-06 22 43032820 43032820 G A CYB5R3 Silent p.F51F 0.28 TCGA-EE-A3J5-06 22 43735241 43735241 C T SCUBE1 Missense_Mutation p.G30E 0.32 tolerated(0.17) benign(0.075) TCGA-EE-A3J5-06 22 44681474 44681474 C T KIAA1644 Missense_Mutation p.D145N 0.34 tolerated(0.63) benign(0.077) TCGA-EE-A3J5-06 22 45128247 45128247 C T PRR5 Silent p.I200I 0.32 TCGA-EE-A3J5-06 22 46372612 46372612 C T WNT7B Nonsense_Mutation p.W8* 0.27 TCGA-EE-A3J5-06 22 46657079 46657079 G A PKDREJ Missense_Mutation p.A714V 0.46 tolerated(0.06) benign(0.248) TCGA-EE-A3J5-06 22 46704370 46704370 T C GTSE1 Missense_Mutation p.F98L 0.28 deleterious(0) possibly_damaging(0.752) TCGA-EE-A3J5-06 22 47274581 47274581 C T TBC1D22A Missense_Mutation p.P224S 0.32 deleterious(0) possibly_damaging(0.713) TCGA-EE-A3J5-06 22 50728070 50728070 G A PLXNB2 Missense_Mutation p.P315L 0.27 tolerated(0.05) possibly_damaging(0.54) TCGA-EE-A3J5-06 22 50728071 50728071 G A PLXNB2 Missense_Mutation p.P315S 0.27 tolerated(0.38) benign(0.032) TCGA-EE-A3J5-06 22 50944110 50944110 C T LMF2 Silent p.T303T 0.32 TCGA-EE-A3J5-06 2 100170782 100170782 C T AFF3 Missense_Mutation p.E1209K 0.38 deleterious(0) benign(0.171) TCGA-EE-A3J5-06 2 10136059 10136059 C T GRHL1 Missense_Mutation p.P518S 0.31 tolerated(0.22) benign(0.005) TCGA-EE-A3J5-06 2 102842385 102842385 G A IL1RL2 Missense_Mutation p.G340E 0.27 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J5-06 2 103125390 103125390 C T SLC9A4 Missense_Mutation p.R496C 0.30 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J5-06 2 103149075 103149075 G A SLC9A4 Silent p.S775S 0.45 TCGA-EE-A3J5-06 2 105654526 105654526 C T MRPS9 5'UTR 0.25 TCGA-EE-A3J5-06 2 106739478 106739478 T C UXS1 Missense_Mutation p.Y236C 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 2 107007464 107007464 C T PLGLA RNA 0.53 TCGA-EE-A3J5-06 2 107032349 107032349 C T RGPD3 Missense_Mutation p.R1674Q 0.21 deleterious_low_confidence(0) benign(0.238) TCGA-EE-A3J5-06 2 1079255 1079255 G A SNTG2 Missense_Mutation p.D42N 0.30 tolerated(0.17) possibly_damaging(0.867) TCGA-EE-A3J5-06 2 112786132 112786132 C T MERTK Silent p.I897I 0.28 TCGA-EE-A3J5-06 2 112942874 112942874 C T FBLN7 Missense_Mutation p.P302L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 113588001 113588001 G A IL1B Silent p.F249F 0.30 TCGA-EE-A3J5-06 2 113676284 113676284 G A IL37 Silent p.E185E 0.29 TCGA-EE-A3J5-06 2 113765514 113765514 C T IL36A Missense_Mutation p.P124S 0.32 deleterious(0.03) probably_damaging(0.994) TCGA-EE-A3J5-06 2 113785554 113785554 C T IL36B Intron 0.27 TCGA-EE-A3J5-06 2 113832220 113832220 C T IL1F10 Intron 0.31 TCGA-EE-A3J5-06 2 113832845 113832845 C T IL1F10 Silent p.F121F 0.32 TCGA-EE-A3J5-06 2 113993113 113993113 G A PAX8 Silent p.S315S 0.38 TCGA-EE-A3J5-06 2 113994189 113994189 G A PAX8 Missense_Mutation p.P296L 0.27 deleterious(0) benign(0.038) TCGA-EE-A3J5-06 2 11727549 11727549 G A GREB1 Intron 0.41 TCGA-EE-A3J5-06 2 11742532 11742532 G A GREB1 Missense_Mutation p.G844R 0.33 tolerated(0.17) probably_damaging(1) TCGA-EE-A3J5-06 2 11775492 11775492 C T GREB1 Silent p.I1769I 0.27 TCGA-EE-A3J5-06 2 11924057 11924057 C T LPIN1 Intron 0.25 TCGA-EE-A3J5-06 2 11964770 11964770 C T LPIN1 Silent p.L927L 0.27 TCGA-EE-A3J5-06 2 119739197 119739197 G T MARCO Missense_Mutation p.G289V 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 2 125262073 125262073 G A CNTNAP5 Missense_Mutation p.G422S 0.28 tolerated(0.16) benign(0.019) TCGA-EE-A3J5-06 2 128354040 128354040 C T MYO7B Missense_Mutation p.H750Y 0.28 tolerated(0.37) benign(0.002) TCGA-EE-A3J5-06 2 128381868 128381868 C T MYO7B Silent p.V1314V 0.75 TCGA-EE-A3J5-06 2 128712758 128712758 G A SAP130 Missense_Mutation p.P768S 0.25 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3J5-06 2 130785891 130785891 C T FAR2P1 RNA 0.44 TCGA-EE-A3J5-06 2 130832582 130832582 C T POTEF Silent p.Q821Q 0.29 TCGA-EE-A3J5-06 2 131487744 131487744 C T GPR148 Silent p.H340H 0.40 TCGA-EE-A3J5-06 2 132021940 132021940 C T POTEE Missense_Mutation p.S971F 0.17 deleterious_low_confidence(0.03) probably_damaging(0.987) TCGA-EE-A3J5-06 2 132259021 132259021 G A AC093838.4 RNA 0.42 TCGA-EE-A3J5-06 2 135738354 135738354 G A MAP3K19 Intron 0.23 TCGA-EE-A3J5-06 2 136467052 136467052 C T R3HDM1 Missense_Mutation p.P802S 0.33 tolerated(0.1) benign(0.004) TCGA-EE-A3J5-06 2 137813993 137813993 C T THSD7B Missense_Mutation p.P48L 0.27 deleterious(0.01) possibly_damaging(0.859) TCGA-EE-A3J5-06 2 137814478 137814478 C T THSD7B Missense_Mutation p.P210S 0.29 deleterious(0.05) possibly_damaging(0.472) TCGA-EE-A3J5-06 2 141215218 141215218 G A LRP1B Missense_Mutation p.P3210S 0.33 possibly_damaging(0.641) TCGA-EE-A3J5-06 2 141243044 141243044 C T LRP1B Missense_Mutation p.G3098E 0.22 probably_damaging(0.931) TCGA-EE-A3J5-06 2 141299511 141299511 G A LRP1B Silent p.F2408F 0.40 TCGA-EE-A3J5-06 2 141474287 141474287 C T LRP1B Missense_Mutation p.G1953R 0.31 probably_damaging(0.953) TCGA-EE-A3J5-06 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.35 TCGA-EE-A3J5-06 2 141762918 141762918 C T LRP1B Missense_Mutation p.G830E 0.39 probably_damaging(0.931) TCGA-EE-A3J5-06 2 152417610 152417610 C T NEB Missense_Mutation p.E6372K 0.15 possibly_damaging(0.891) TCGA-EE-A3J5-06 2 152499777 152499777 G A NEB Nonsense_Mutation p.Q2683* 0.37 TCGA-EE-A3J5-06 2 152500364 152500364 G A NEB Missense_Mutation p.H2642Y 0.27 possibly_damaging(0.891) TCGA-EE-A3J5-06 2 152698471 152698471 C T CACNB4 Silent p.R416R 0.37 TCGA-EE-A3J5-06 2 153486409 153486409 G A FMNL2 Missense_Mutation p.S847N 0.23 benign(0.383) TCGA-EE-A3J5-06 2 155555318 155555318 G A KCNJ3 Missense_Mutation p.D11N 0.44 deleterious(0.05) benign(0.303) TCGA-EE-A3J5-06 2 15701444 15701444 A T NBAS 5'UTR 0.39 TCGA-EE-A3J5-06 2 158272405 158272405 C T CYTIP Silent p.K288K 0.41 TCGA-EE-A3J5-06 2 16082183 16082183 G A MYCN 5'UTR 0.48 TCGA-EE-A3J5-06 2 160824099 160824099 G A PLA2R1 Missense_Mutation p.P952L 0.32 deleterious(0.02) benign(0.041) TCGA-EE-A3J5-06 2 161143514 161143514 C A RBMS1 Missense_Mutation p.G241V 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3J5-06 2 162711576 162711576 A G SLC4A10 Silent p.R171R 0.27 TCGA-EE-A3J5-06 2 163374610 163374610 G A KCNH7 Silent p.S174S 0.29 TCGA-EE-A3J5-06 2 163374611 163374611 G A KCNH7 Missense_Mutation p.S174F 0.30 deleterious(0) probably_damaging(0.971) TCGA-EE-A3J5-06 2 165551083 165551083 C T COBLL1 Missense_Mutation p.G978D 0.26 tolerated(0.43) benign(0.021) TCGA-EE-A3J5-06 2 165950986 165950986 A G SCN3A Silent p.F1478F 0.41 TCGA-EE-A3J5-06 2 166226664 166226664 G A SCN2A Missense_Mutation p.R1235Q 0.36 deleterious(0) probably_damaging(0.951) TCGA-EE-A3J5-06 2 166894361 166894361 C T SCN1A Nonsense_Mutation p.W957* 0.24 TCGA-EE-A3J5-06 2 166903457 166903457 C T SCN1A Missense_Mutation p.M400I 0.35 deleterious(0.03) probably_damaging(0.985) TCGA-EE-A3J5-06 2 167055535 167055535 G A SCN9A Missense_Mutation p.P1861S 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 167085304 167085304 G A SCN9A Missense_Mutation p.S1357F 0.36 deleterious(0) possibly_damaging(0.594) TCGA-EE-A3J5-06 2 167159615 167159615 C T SCN9A Missense_Mutation p.E296K 0.43 tolerated(0.44) benign(0.003) TCGA-EE-A3J5-06 2 167262447 167262447 G A SCN7A Silent p.L1564L 0.33 TCGA-EE-A3J5-06 2 167297941 167297941 A G SCN7A Missense_Mutation p.F708L 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3J5-06 2 168100119 168100119 A T XIRP2 Missense_Mutation p.Q739H 0.25 probably_damaging(0.993) TCGA-EE-A3J5-06 2 168102800 168102800 T C XIRP2 Missense_Mutation p.V1633A 0.53 probably_damaging(0.961) TCGA-EE-A3J5-06 2 168115111 168115111 T C XIRP2 3'UTR 0.19 TCGA-EE-A3J5-06 2 168115793 168115793 C T XIRP2 3'UTR 0.34 TCGA-EE-A3J5-06 2 169020267 169020267 C T STK39 Missense_Mutation p.R185K 0.37 tolerated(1) benign(0.002) TCGA-EE-A3J5-06 2 169783755 169783755 C T ABCB11 Missense_Mutation p.G1177R 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 170011003 170011003 C T LRP2 Missense_Mutation p.D4088N 0.39 probably_damaging(1) TCGA-EE-A3J5-06 2 170034445 170034445 A T LRP2 Missense_Mutation p.Y3421N 0.35 probably_damaging(0.977) TCGA-EE-A3J5-06 2 170349485 170349485 A G BBS5 Missense_Mutation p.K163R 0.34 tolerated(0.34) probably_damaging(0.973) TCGA-EE-A3J5-06 2 171055732 171055732 G A MYO3B Missense_Mutation p.G6E 0.44 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-EE-A3J5-06 2 171259384 171259384 G A MYO3B Missense_Mutation p.G719E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 171687555 171687555 C T GAD1 Missense_Mutation p.R134C 0.36 deleterious(0.02) possibly_damaging(0.824) TCGA-EE-A3J5-06 2 172725232 172725232 G A SLC25A12 Silent p.I56I 0.38 TCGA-EE-A3J5-06 2 17697103 17697103 C T RAD51AP2 Silent p.E860E 0.50 TCGA-EE-A3J5-06 2 17698508 17698508 G A RAD51AP2 Missense_Mutation p.S392F 0.41 tolerated(0.84) benign(0.01) TCGA-EE-A3J5-06 2 178095817 178095817 C T NFE2L2 Missense_Mutation p.G505D 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 178096113 178096113 G A NFE2L2 Silent p.P406P 0.27 TCGA-EE-A3J5-06 2 178096114 178096114 G A NFE2L2 Missense_Mutation p.P406L 0.27 tolerated(0.12) benign(0.014) TCGA-EE-A3J5-06 2 179404603 179404603 C T TTN Missense_Mutation p.G32730E 0.36 TCGA-EE-A3J5-06 2 179408277 179408277 G A TTN Silent p.I32141I 0.22 TCGA-EE-A3J5-06 2 179418030 179418030 C T TTN Missense_Mutation p.R29866K 0.35 TCGA-EE-A3J5-06 2 179418695 179418695 C T TTN Missense_Mutation p.G29715R 0.31 TCGA-EE-A3J5-06 2 179428646 179428646 A G TTN Missense_Mutation p.Y27405H 0.34 TCGA-EE-A3J5-06 2 179431916 179431916 C T TTN Missense_Mutation p.G26315S 0.32 TCGA-EE-A3J5-06 2 179438970 179438970 C T TTN Silent p.K23963K 0.33 TCGA-EE-A3J5-06 2 179454956 179454956 C T TTN Missense_Mutation p.R20499Q 0.30 TCGA-EE-A3J5-06 2 179456010 179456010 C T TTN Missense_Mutation p.E20148K 0.39 TCGA-EE-A3J5-06 2 179458032 179458032 G C TTN Missense_Mutation p.P19635A 0.32 TCGA-EE-A3J5-06 2 179469494 179469494 T C TTN Missense_Mutation p.S18108G 0.21 TCGA-EE-A3J5-06 2 179477511 179477511 C T TTN Missense_Mutation p.R16646Q 0.20 TCGA-EE-A3J5-06 2 179480173 179480173 G A TTN Nonsense_Mutation p.R16167* 0.30 TCGA-EE-A3J5-06 2 179498037 179498037 C T TTN Silent p.V14321V 0.26 TCGA-EE-A3J5-06 2 179516193 179516193 G A TTN Silent p.A13178A 0.33 TCGA-EE-A3J5-06 2 179579180 179579180 C T TTN Missense_Mutation p.G8774E 0.23 TCGA-EE-A3J5-06 2 179582062 179582062 G A TTN Missense_Mutation p.L8467F 0.30 TCGA-EE-A3J5-06 2 179584835 179584835 G A TTN Missense_Mutation p.S7845L 0.24 TCGA-EE-A3J5-06 2 179593106 179593106 G A TTN Missense_Mutation p.S6482L 0.33 TCGA-EE-A3J5-06 2 179594433 179594433 C T TTN Missense_Mutation p.D6183N 0.33 TCGA-EE-A3J5-06 2 179604483 179604483 G A TTN Missense_Mutation p.P4493S 0.28 TCGA-EE-A3J5-06 2 179605809 179605809 C T TTN Missense_Mutation p.D4051N 0.36 TCGA-EE-A3J5-06 2 179613203 179613203 C T TTN Intron 0.25 TCGA-EE-A3J5-06 2 179613212 179613212 C T TTN Intron 0.24 TCGA-EE-A3J5-06 2 179621343 179621343 G A TTN Silent p.S3620S 0.24 TCGA-EE-A3J5-06 2 179623868 179623868 C T TTN Silent p.K3382K 0.37 TCGA-EE-A3J5-06 2 179631247 179631247 G A TTN Silent p.F3188F 0.22 TCGA-EE-A3J5-06 2 179734016 179734016 A G CCDC141 Missense_Mutation p.V741A 0.15 tolerated(0.05) benign(0.106) TCGA-EE-A3J5-06 2 182398999 182398999 G A ITGA4 Missense_Mutation p.D929N 0.28 deleterious(0.02) possibly_damaging(0.859) TCGA-EE-A3J5-06 2 185802848 185802848 G A ZNF804A Missense_Mutation p.D909N 0.38 tolerated(0.07) benign(0.077) TCGA-EE-A3J5-06 2 186671202 186671202 G A FSIP2 Silent p.R5812R 0.18 TCGA-EE-A3J5-06 2 187500840 187500840 C T ITGAV Silent p.I221I 0.26 TCGA-EE-A3J5-06 2 187506153 187506153 C T ITGAV Missense_Mutation p.R333C 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 187698694 187698694 G A ZSWIM2 Silent p.S269S 0.35 TCGA-EE-A3J5-06 2 187712507 187712507 G A ZSWIM2 Missense_Mutation p.P61S 0.24 deleterious(0) probably_damaging(0.966) TCGA-EE-A3J5-06 2 189849971 189849971 C T COL3A1 Missense_Mutation p.P111S 0.37 unknown(0) TCGA-EE-A3J5-06 2 190569920 190569920 C T ANKAR Missense_Mutation p.P627L 0.37 deleterious(0.01) possibly_damaging(0.876) TCGA-EE-A3J5-06 2 190597928 190597928 C T ANKAR Silent p.V1132V 0.28 TCGA-EE-A3J5-06 2 191941042 191941042 G A STAT4 Missense_Mutation p.H95Y 0.26 tolerated(0.06) possibly_damaging(0.703) TCGA-EE-A3J5-06 2 1926730 1926730 C T MYT1L Missense_Mutation p.G271R 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3J5-06 2 192815033 192815033 C T TMEFF2 3'UTR 0.35 TCGA-EE-A3J5-06 2 192815034 192815034 C T TMEFF2 3'UTR 0.36 TCGA-EE-A3J5-06 2 196602738 196602738 C T DNAH7 Silent p.T3994T 0.40 TCGA-EE-A3J5-06 2 196749452 196749452 G A DNAH7 Nonsense_Mutation p.R1874* 0.39 TCGA-EE-A3J5-06 2 196837163 196837163 C T DNAH7 Missense_Mutation p.D621N 0.31 tolerated(0.3) benign(0.017) TCGA-EE-A3J5-06 2 197118738 197118738 C T HECW2 Silent p.E1145E 0.32 TCGA-EE-A3J5-06 2 197189747 197189747 G A HECW2 Missense_Mutation p.S233F 0.30 deleterious(0) probably_damaging(0.952) TCGA-EE-A3J5-06 2 197594822 197594822 G A CCDC150 Missense_Mutation p.E988K 0.27 tolerated(0.06) benign(0.148) TCGA-EE-A3J5-06 2 201724928 201724928 C G CLK1 Missense_Mutation p.R176P 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3J5-06 2 201950226 201950226 C T NDUFB3 Missense_Mutation p.S62F 0.38 tolerated(0.12) probably_damaging(0.932) TCGA-EE-A3J5-06 2 202073875 202073875 C T CASP10 Silent p.V335V 0.22 TCGA-EE-A3J5-06 2 202622465 202622465 T C ALS2 Silent p.A377A 0.32 TCGA-EE-A3J5-06 2 203630259 203630259 C T FAM117B Silent p.L514L 0.30 TCGA-EE-A3J5-06 2 206023510 206023510 C T PARD3B Intron 0.32 TCGA-EE-A3J5-06 2 206921493 206921493 G A INO80D Silent p.L131L 0.23 TCGA-EE-A3J5-06 2 207041246 207041246 A C GPR1 Missense_Mutation p.S242R 0.28 tolerated(0.1) benign(0.29) TCGA-EE-A3J5-06 2 207161985 207161985 C T ZDBF2 Nonsense_Mutation p.Q26* 0.28 TCGA-EE-A3J5-06 2 207170315 207170315 G A ZDBF2 Missense_Mutation p.E355K 0.21 tolerated(0.47) benign(0.005) TCGA-EE-A3J5-06 2 207174413 207174413 C T ZDBF2 Missense_Mutation p.H1721Y 0.26 tolerated(0.2) benign(0.152) TCGA-EE-A3J5-06 2 207345994 207345994 C T ADAM23 Silent p.A157A 0.34 TCGA-EE-A3J5-06 2 207431961 207431961 G A ADAM23 Missense_Mutation p.R470Q 0.33 tolerated(0.12) benign(0.158) TCGA-EE-A3J5-06 2 207604347 207604347 C T MDH1B Missense_Mutation p.E500K 0.41 tolerated_low_confidence(0.11) benign(0.14) TCGA-EE-A3J5-06 2 208866170 208866170 G A PLEKHM3 Missense_Mutation p.S65F 0.38 deleterious(0) benign(0.406) TCGA-EE-A3J5-06 2 208994365 208994365 C T CRYGC Missense_Mutation p.E18K 0.29 deleterious(0) possibly_damaging(0.476) TCGA-EE-A3J5-06 2 209302275 209302275 C A PTH2R Missense_Mutation p.F64L 0.29 tolerated(1) benign(0.006) TCGA-EE-A3J5-06 2 209302276 209302276 C T PTH2R Missense_Mutation p.P65S 0.29 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J5-06 2 209302320 209302320 G A PTH2R Silent p.G79G 0.39 TCGA-EE-A3J5-06 2 210557829 210557829 C T MAP2 Missense_Mutation p.P312L 0.34 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-EE-A3J5-06 2 210559987 210559987 C T MAP2 Silent p.S1031S 0.32 TCGA-EE-A3J5-06 2 21231268 21231268 C T APOB Silent p.L2824L 0.28 TCGA-EE-A3J5-06 2 21236086 21236086 G A APOB Missense_Mutation p.R1388C 0.33 benign(0.333) TCGA-EE-A3J5-06 2 212426716 212426716 G A ERBB4 Missense_Mutation p.P800L 0.32 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J5-06 2 21255324 21255324 G A APOB Silent p.I418I 0.25 TCGA-EE-A3J5-06 2 213291031 213291031 T A ERBB4 Intron 0.40 TCGA-EE-A3J5-06 2 213872101 213872101 C A IKZF2 Nonsense_Mutation p.E522* 0.39 TCGA-EE-A3J5-06 2 213872102 213872102 C T IKZF2 Silent p.G521G 0.39 TCGA-EE-A3J5-06 2 215862524 215862524 G A ABCA12 Silent p.T1063T 0.25 TCGA-EE-A3J5-06 2 215868952 215868952 C T ABCA12 Silent p.L888L 0.29 TCGA-EE-A3J5-06 2 216960822 216960822 G A TMEM169 Missense_Mutation p.E46K 0.44 tolerated(0.19) possibly_damaging(0.623) TCGA-EE-A3J5-06 2 219000408 219000408 C T CXCR2 Missense_Mutation p.A295V 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A3J5-06 2 219082170 219082170 C T ARPC2 5'UTR 0.32 TCGA-EE-A3J5-06 2 219204784 219204784 G A PNKD Missense_Mutation p.D129N 0.35 tolerated(0.1) possibly_damaging(0.889) TCGA-EE-A3J5-06 2 219757847 219757847 G A WNT10A Missense_Mutation p.D370N 0.53 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 2 220089166 220089166 G A ATG9A Silent p.I309I 0.31 TCGA-EE-A3J5-06 2 220098072 220098072 C T ANKZF1 Nonsense_Mutation p.Q246* 0.34 TCGA-EE-A3J5-06 2 222428965 222428965 G A EPHA4 Silent p.F103F 0.28 TCGA-EE-A3J5-06 2 224629914 224629914 G A AP1S3 Intron 0.36 TCGA-EE-A3J5-06 2 225727399 225727399 G A DOCK10 Missense_Mutation p.P556L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 2 226446812 226446812 T C NYAP2 Missense_Mutation p.S227P 0.44 tolerated(0.11) benign(0.153) TCGA-EE-A3J5-06 2 228118856 228118856 G A COL4A3 Missense_Mutation p.G265E 0.32 probably_damaging(1) TCGA-EE-A3J5-06 2 228145159 228145159 G A COL4A3 Missense_Mutation p.E743K 0.30 unknown(0) TCGA-EE-A3J5-06 2 228563864 228563864 G A SLC19A3 Silent p.F189F 0.36 TCGA-EE-A3J5-06 2 230450637 230450637 G A DNER Nonsense_Mutation p.Q262* 0.26 TCGA-EE-A3J5-06 2 230861589 230861589 G A FBXO36 Missense_Mutation p.D110N 0.39 tolerated(0.09) benign(0.135) TCGA-EE-A3J5-06 2 232263129 232263129 C T B3GNT7 Silent p.V233V 0.34 TCGA-EE-A3J5-06 2 232660851 232660851 G A COPS7B Silent p.E121E 0.31 TCGA-EE-A3J5-06 2 233990529 233990529 G A INPP5D Missense_Mutation p.E142K 0.48 tolerated(0.12) possibly_damaging(0.686) TCGA-EE-A3J5-06 2 234590918 234590918 C T UGT1A7 Missense_Mutation p.S112L 0.21 tolerated(0.34) benign(0.03) TCGA-EE-A3J5-06 2 234601577 234601577 G A UGT1A6 5'UTR 0.31 TCGA-EE-A3J5-06 2 234627728 234627728 G A UGT1A4 Missense_Mutation p.E88K 0.32 tolerated(0.07) benign(0.044) TCGA-EE-A3J5-06 2 234854600 234854600 G T TRPM8 Missense_Mutation p.C267F 0.31 deleterious(0) benign(0.11) TCGA-EE-A3J5-06 2 236817381 236817381 G A AGAP1 Splice_Site p.X386_splice 0.16 TCGA-EE-A3J5-06 2 237240221 237240221 A G IQCA1 Silent p.I718I 0.23 TCGA-EE-A3J5-06 2 237272521 237272521 C T IQCA1 Missense_Mutation p.E591K 0.32 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 2 237489957 237489957 C T ACKR3 Silent p.I283I 0.29 TCGA-EE-A3J5-06 2 238249538 238249538 G A COL6A3 Missense_Mutation p.S2674F 0.30 unknown(0) TCGA-EE-A3J5-06 2 238462294 238462294 C T MLPH 3'UTR 0.29 TCGA-EE-A3J5-06 2 239016552 239016552 A G ESPNL Missense_Mutation p.I265V 0.43 tolerated(0.68) benign(0.015) TCGA-EE-A3J5-06 2 239307550 239307550 C T TRAF3IP1 Missense_Mutation p.S689L 0.45 deleterious(0) probably_damaging(0.952) TCGA-EE-A3J5-06 2 241078632 241078632 G A OTOS Silent p.P75P 0.34 TCGA-EE-A3J5-06 2 241706374 241706374 C A KIF1A Nonsense_Mutation p.E548* 0.38 TCGA-EE-A3J5-06 2 242106511 242106511 C T PPP1R7 Intron 0.40 TCGA-EE-A3J5-06 2 242664416 242664416 G A ING5 Silent p.R231R 0.28 TCGA-EE-A3J5-06 2 264866 264866 G A ACP1 5'Flank 0.24 TCGA-EE-A3J5-06 2 26596326 26596326 T C EPT1 Silent p.V134V 0.34 TCGA-EE-A3J5-06 2 27456398 27456398 C T CAD Silent p.D1070D 0.34 TCGA-EE-A3J5-06 2 27456399 27456399 C T CAD Missense_Mutation p.L1071F 0.33 tolerated(0.63) benign(0.082) TCGA-EE-A3J5-06 2 27605022 27605022 G A PPM1G Missense_Mutation p.L469F 0.25 tolerated(0.08) possibly_damaging(0.799) TCGA-EE-A3J5-06 2 28763257 28763257 C T PLB1 Silent p.C241C 0.42 TCGA-EE-A3J5-06 2 28763259 28763259 C T PLB1 Missense_Mutation p.S242L 0.43 tolerated(0.7) benign(0.002) TCGA-EE-A3J5-06 2 28812360 28812360 G A PLB1 Missense_Mutation p.R620K 0.22 tolerated(0.34) benign(0.074) TCGA-EE-A3J5-06 2 28863814 28863814 A G PLB1 Missense_Mutation p.T1374A 0.33 tolerated(0.16) benign(0.392) TCGA-EE-A3J5-06 2 29295495 29295495 T G C2orf71 Missense_Mutation p.K545Q 0.45 deleterious(0.04) probably_damaging(0.977) TCGA-EE-A3J5-06 2 29451761 29451761 C A ALK Missense_Mutation p.G935V 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 3483043 3483043 C T TRAPPC12 Silent p.S673S 0.36 TCGA-EE-A3J5-06 2 3628410 3628410 G A RPS7 Missense_Mutation p.G175S 0.38 tolerated(0.53) benign(0.021) TCGA-EE-A3J5-06 2 36737185 36737185 C T CRIM1 Missense_Mutation p.L521F 0.21 deleterious(0.03) possibly_damaging(0.631) TCGA-EE-A3J5-06 2 3743350 3743350 A T ALLC Missense_Mutation p.K185N 0.25 tolerated(0.1) benign(0.008) TCGA-EE-A3J5-06 2 37458795 37458795 G A CEBPZ 5'UTR 0.36 TCGA-EE-A3J5-06 2 40366589 40366589 C T SLC8A1 Missense_Mutation p.D833N 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 2 40656049 40656049 C T SLC8A1 Missense_Mutation p.E458K 0.41 tolerated(0.18) benign(0.165) TCGA-EE-A3J5-06 2 42990124 42990124 C T OXER1 Missense_Mutation p.R399K 0.25 tolerated(0.58) benign(0.004) TCGA-EE-A3J5-06 2 43768301 43768301 C T THADA Silent p.E1087E 0.45 TCGA-EE-A3J5-06 2 44586902 44586902 G A PREPL 5'UTR 0.27 TCGA-EE-A3J5-06 2 46054 46054 C T FAM110C Missense_Mutation p.R111Q 0.42 deleterious(0.01) possibly_damaging(0.657) TCGA-EE-A3J5-06 2 46739273 46739273 G A ATP6V1E2 Missense_Mutation p.S193L 0.25 deleterious(0.04) benign(0.291) TCGA-EE-A3J5-06 2 47710163 47710163 C T MSH2 3'UTR 0.40 TCGA-EE-A3J5-06 2 49190771 49190771 G A FSHR Missense_Mutation p.P397S 0.37 tolerated(0.13) possibly_damaging(0.797) TCGA-EE-A3J5-06 2 54101548 54101548 G A PSME4 Silent p.F1676F 0.38 TCGA-EE-A3J5-06 2 56216122 56216122 C T MIR216A RNA 0.22 TCGA-EE-A3J5-06 2 58390196 58390196 C T FANCL Silent p.L268L 0.39 TCGA-EE-A3J5-06 2 60688733 60688733 G A BCL11A Silent p.S438S 0.35 TCGA-EE-A3J5-06 2 62067374 62067374 G A FAM161A Silent p.S255S 0.32 TCGA-EE-A3J5-06 2 62067375 62067375 G A FAM161A Missense_Mutation p.S255F 0.31 tolerated(0.1) benign(0.005) TCGA-EE-A3J5-06 2 63175738 63175738 T C EHBP1 Missense_Mutation p.V621A 0.26 tolerated_low_confidence(0.22) benign(0.02) TCGA-EE-A3J5-06 2 68620323 68620323 G A PLEK Silent p.R264R 0.28 TCGA-EE-A3J5-06 2 69409767 69409767 C T ANTXR1 Missense_Mutation p.P443L 0.29 tolerated(0.18) benign(0.232) TCGA-EE-A3J5-06 2 69409768 69409768 C T ANTXR1 Silent p.P443P 0.29 TCGA-EE-A3J5-06 2 69575352 69575352 G T GFPT1 Silent p.P320P 0.25 TCGA-EE-A3J5-06 2 69575353 69575353 G A GFPT1 Missense_Mutation p.P320L 0.25 tolerated(0.17) benign(0.003) TCGA-EE-A3J5-06 2 70903898 70903898 C T ADD2 Intron 0.26 TCGA-EE-A3J5-06 2 71060065 71060065 G A CD207 Missense_Mutation p.S228L 0.28 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 2 71209716 71209716 G A ANKRD53 Silent p.K264K 0.30 TCGA-EE-A3J5-06 2 71209717 71209717 G A ANKRD53 Missense_Mutation p.D265N 0.31 tolerated(0.08) possibly_damaging(0.835) TCGA-EE-A3J5-06 2 72786608 72786608 G A EXOC6B Nonsense_Mutation p.R297* 0.25 TCGA-EE-A3J5-06 2 73302619 73302619 C A RAB11FIP5 3'UTR 0.34 TCGA-EE-A3J5-06 2 74474193 74474193 A G SLC4A5 Missense_Mutation p.Y677H 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3J5-06 2 74475573 74475573 G A SLC4A5 Missense_Mutation p.S565F 0.35 tolerated(0.21) benign(0.072) TCGA-EE-A3J5-06 2 74652712 74652712 G A WDR54 Missense_Mutation p.G297S 0.34 tolerated(1) benign(0.002) TCGA-EE-A3J5-06 2 74718697 74718697 G A TTC31 Silent p.L258L 0.41 TCGA-EE-A3J5-06 2 75104393 75104393 C T HK2 Missense_Mutation p.P326S 0.23 tolerated(0.24) benign(0.003) TCGA-EE-A3J5-06 2 75104394 75104394 C T HK2 Missense_Mutation p.P326L 0.23 deleterious(0.01) benign(0.13) TCGA-EE-A3J5-06 2 79253856 79253856 G A REG3G Missense_Mutation p.E32K 0.24 tolerated(0.32) benign(0.012) TCGA-EE-A3J5-06 2 80530710 80530710 C T LRRTM1 Missense_Mutation p.E79K 0.41 tolerated(0.5) benign(0.007) TCGA-EE-A3J5-06 2 80782936 80782936 C T CTNNA2 Silent p.I553I 0.37 TCGA-EE-A3J5-06 2 80846354 80846354 G A CTNNA2 Intron 0.50 TCGA-EE-A3J5-06 2 85059214 85059214 C T TRABD2A Silent p.E300E 0.29 TCGA-EE-A3J5-06 2 86362103 86362103 G A PTCD3 Missense_Mutation p.E591K 0.27 tolerated(0.1) benign(0.196) TCGA-EE-A3J5-06 2 88383988 88383988 G A SMYD1 Silent p.G97G 0.25 TCGA-EE-A3J5-06 2 89399539 89399539 A C IGKV1-16 Nonsense_Mutation p.L55* 0.32 TCGA-EE-A3J5-06 2 89417294 89417294 G A IGKV1-17 Silent p.V5V 0.19 TCGA-EE-A3J5-06 2 89459307 89459307 G A IGKV6-21 Silent p.F90F 0.31 TCGA-EE-A3J5-06 2 89475915 89475915 C T IGKV2-24 Missense_Mutation p.R86K 0.32 deleterious(0.05) possibly_damaging(0.82) TCGA-EE-A3J5-06 2 95537510 95537510 G A TEKT4 Silent p.S62S 0.18 TCGA-EE-A3J5-06 2 95815453 95815453 G A ZNF514 Silent p.P259P 0.31 TCGA-EE-A3J5-06 2 95954275 95954275 C T PROM2 Silent p.I793I 0.32 TCGA-EE-A3J5-06 2 9728436 9728436 C T YWHAQ Missense_Mutation p.G147E 0.26 tolerated_low_confidence(1) benign(0.033) TCGA-EE-A3J5-06 2 98171568 98171568 A C ANKRD36B RNA 0.31 TCGA-EE-A3J5-06 2 98354002 98354002 G A ZAP70 Silent p.L452L 0.21 TCGA-EE-A3J5-06 2 98986506 98986506 G A CNGA3 Missense_Mutation p.R23Q 0.27 tolerated_low_confidence(0.1) benign(0.001) TCGA-EE-A3J5-06 2 99220616 99220616 G A COA5 Silent p.Y46Y 0.27 TCGA-EE-A3J5-06 2 99870699 99870699 C T LYG2 Missense_Mutation p.G9R 0.35 deleterious(0) probably_damaging(0.925) TCGA-EE-A3J5-06 2 99900845 99900845 C T LYG1 3'UTR 0.31 TCGA-EE-A3J5-06 3 102183082 102183082 G A ZPLD1 Missense_Mutation p.D266N 0.32 tolerated(0.28) benign(0.044) TCGA-EE-A3J5-06 3 10280494 10280494 G A IRAK2 Nonsense_Mutation p.W512* 0.38 TCGA-EE-A3J5-06 3 10420054 10420054 G A ATP2B2 Silent p.P361P 0.31 TCGA-EE-A3J5-06 3 10442697 10442697 G A ATP2B2 Silent p.L241L 0.28 TCGA-EE-A3J5-06 3 10452414 10452414 G A ATP2B2 Silent p.F95F 0.38 TCGA-EE-A3J5-06 3 105378035 105378035 G A CBLB Missense_Mutation p.P910S 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3J5-06 3 108074059 108074059 G A HHLA2 Nonsense_Mutation p.W172* 0.36 TCGA-EE-A3J5-06 3 108074180 108074180 G A HHLA2 Missense_Mutation p.E213K 0.32 tolerated(0.1) benign(0.115) TCGA-EE-A3J5-06 3 108102576 108102576 C T MYH15 Missense_Mutation p.E1898K 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 3 108160067 108160067 C T MYH15 Nonsense_Mutation p.W919* 0.33 TCGA-EE-A3J5-06 3 108160068 108160068 A T MYH15 Missense_Mutation p.W919R 0.32 tolerated(0.21) benign(0.018) TCGA-EE-A3J5-06 3 108719407 108719407 G A MORC1 Silent p.I728I 0.29 TCGA-EE-A3J5-06 3 108818259 108818259 C T MORC1 Silent p.T123T 0.27 TCGA-EE-A3J5-06 3 111671489 111671489 G A PHLDB2 Missense_Mutation p.R901Q 0.41 deleterious(0.03) benign(0.126) TCGA-EE-A3J5-06 3 112546427 112546427 C A CD200R1L Missense_Mutation p.G73C 0.27 deleterious(0) possibly_damaging(0.827) TCGA-EE-A3J5-06 3 113377984 113377984 G A KIAA2018 Missense_Mutation p.P849S 0.39 benign(0.007) TCGA-EE-A3J5-06 3 118906709 118906709 G A UPK1B Missense_Mutation p.D53N 0.41 tolerated(0.13) benign(0.243) TCGA-EE-A3J5-06 3 119128452 119128452 G A ARHGAP31 Silent p.E585E 0.30 TCGA-EE-A3J5-06 3 119128453 119128453 G A ARHGAP31 Missense_Mutation p.E586K 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-EE-A3J5-06 3 119135155 119135155 T C ARHGAP31 3'UTR 0.33 TCGA-EE-A3J5-06 3 119367315 119367315 G A POPDC2 Silent p.L267L 0.33 TCGA-EE-A3J5-06 3 120347114 120347114 G A HGD 3'UTR 0.35 TCGA-EE-A3J5-06 3 120673799 120673799 G A STXBP5L Missense_Mutation p.G68S 0.46 deleterious(0) possibly_damaging(0.566) TCGA-EE-A3J5-06 3 121186413 121186413 C T POLQ Missense_Mutation p.G2307E 0.44 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 3 121238874 121238874 G A POLQ Missense_Mutation p.R438W 0.32 deleterious(0) probably_damaging(0.941) TCGA-EE-A3J5-06 3 121305072 121305072 G A ARGFX Nonsense_Mutation p.W191* 0.32 TCGA-EE-A3J5-06 3 121634131 121634131 T C SLC15A2 Silent p.L196L 0.29 TCGA-EE-A3J5-06 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.35 tolerated(0.24) benign(0.003) TCGA-EE-A3J5-06 3 122002643 122002643 C T CASR Silent p.I624I 0.31 TCGA-EE-A3J5-06 3 123419581 123419581 C T MYLK Missense_Mutation p.E912K 0.28 deleterious(0.01) benign(0.001) TCGA-EE-A3J5-06 3 124449230 124449230 G A UMPS 5'UTR 0.42 TCGA-EE-A3J5-06 3 125295200 125295200 G A OSBPL11 Missense_Mutation p.P167S 0.21 tolerated(0.44) benign(0.335) TCGA-EE-A3J5-06 3 125828856 125828856 C T ALDH1L1 Missense_Mutation p.E770K 0.26 tolerated(0.1) benign(0.028) TCGA-EE-A3J5-06 3 125873440 125873440 C T ALDH1L1 Missense_Mutation p.G236E 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3J5-06 3 125873441 125873441 C T ALDH1L1 Missense_Mutation p.G236R 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3J5-06 3 12623802 12623802 C T MKRN2 3'UTR 0.37 TCGA-EE-A3J5-06 3 126272230 126272230 C T C3orf22 Missense_Mutation p.D2N 0.40 tolerated(0.19) possibly_damaging(0.908) TCGA-EE-A3J5-06 3 126915670 126915670 G A C3orf56 Missense_Mutation p.G48R 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A3J5-06 3 128204626 128204626 C T GATA2 Missense_Mutation p.G272E 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A3J5-06 3 128696912 128696912 C T KIAA1257 Missense_Mutation p.E262K 0.29 tolerated(0.14) possibly_damaging(0.575) TCGA-EE-A3J5-06 3 129134240 129134240 C T EFCAB12 Missense_Mutation p.G229E 0.48 tolerated(0.17) benign(0.09) TCGA-EE-A3J5-06 3 129214405 129214405 C T IFT122 Silent p.L772L 0.34 TCGA-EE-A3J5-06 3 130188260 130188260 G A COL6A5 Missense_Mutation p.R2471Q 0.38 deleterious(0.01) possibly_damaging(0.621) TCGA-EE-A3J5-06 3 130289659 130289659 C T COL6A6 Intron 0.29 TCGA-EE-A3J5-06 3 130353461 130353461 G A COL6A6 Missense_Mutation p.G1674R 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 3 133098765 133098765 C T TMEM108 Silent p.P70P 0.35 TCGA-EE-A3J5-06 3 13379373 13379373 G A NUP210 Silent p.I1172I 0.25 TCGA-EE-A3J5-06 3 13525016 13525016 G A HDAC11 Silent p.E68E 0.35 TCGA-EE-A3J5-06 3 136701038 136701038 C T IL20RB Silent p.I84I 0.35 TCGA-EE-A3J5-06 3 137483623 137483623 G A SOX14 5'UTR 0.36 TCGA-EE-A3J5-06 3 138024874 138024874 C T NME9 Missense_Mutation p.R142Q 0.25 tolerated(0.14) benign(0.055) TCGA-EE-A3J5-06 3 138341174 138341174 C T FAIM Missense_Mutation p.L120F 0.34 tolerated(0.35) benign(0.159) TCGA-EE-A3J5-06 3 1394015 1394015 C T CNTN6 Missense_Mutation p.L458F 0.29 tolerated(0.26) benign(0.019) TCGA-EE-A3J5-06 3 141328727 141328727 G T RASA2 Nonsense_Mutation p.G780* 0.63 TCGA-EE-A3J5-06 3 141884533 141884533 T C GK5 Silent p.E507E 0.72 TCGA-EE-A3J5-06 3 1424775 1424775 T G CNTN6 Silent p.S772S 0.30 TCGA-EE-A3J5-06 3 1427442 1427442 C T CNTN6 Missense_Mutation p.P889S 0.28 deleterious(0.03) probably_damaging(1) TCGA-EE-A3J5-06 3 143186006 143186006 A T SLC9A9 Missense_Mutation p.L448I 0.70 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J5-06 3 14552972 14552972 C T GRIP2 RNA 0.35 TCGA-EE-A3J5-06 3 14745851 14745851 G A C3orf20 Missense_Mutation p.E296K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 3 14861689 14861689 G A FGD5 Missense_Mutation p.G371S 0.29 tolerated_low_confidence(0.14) benign(0.048) TCGA-EE-A3J5-06 3 151112471 151112471 C A MED12L Missense_Mutation p.S1844Y 0.73 tolerated_low_confidence(0.41) possibly_damaging(0.883) TCGA-EE-A3J5-06 3 152880701 152880701 G A RAP2B Silent p.K73K 0.64 TCGA-EE-A3J5-06 3 154832805 154832805 G A MME Missense_Mutation p.M73I 0.62 deleterious(0.03) benign(0.179) TCGA-EE-A3J5-06 3 16254193 16254193 C T GALNT15 Missense_Mutation p.R439C 0.26 deleterious(0.01) benign(0.035) TCGA-EE-A3J5-06 3 164700062 164700062 G A SI Missense_Mutation p.S1795L 0.57 tolerated(0.42) benign(0.002) TCGA-EE-A3J5-06 3 169540497 169540497 G A LRRIQ4 Missense_Mutation p.G263E 0.58 tolerated(0.08) probably_damaging(0.93) TCGA-EE-A3J5-06 3 171455442 171455442 G A PLD1 Silent p.I56I 0.57 TCGA-EE-A3J5-06 3 173997319 173997319 C T NLGN1 Missense_Mutation p.P510S 0.60 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 3 175473133 175473133 C T NAALADL2 Missense_Mutation p.R706W 0.68 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 3 183210300 183210300 C T KLHL6 Missense_Mutation p.D516N 0.65 tolerated(0.82) benign(0.003) TCGA-EE-A3J5-06 3 183683202 183683202 C T ABCC5 Missense_Mutation p.D641N 0.69 deleterious(0.02) benign(0.188) TCGA-EE-A3J5-06 3 184049375 184049375 G A EIF4G1 Missense_Mutation p.R1466Q 0.69 tolerated(0.53) benign(0) TCGA-EE-A3J5-06 3 186953444 186953444 G A MASP1 3'UTR 0.67 TCGA-EE-A3J5-06 3 191093011 191093011 C T CCDC50 Silent p.S203S 0.40 TCGA-EE-A3J5-06 3 192516989 192516989 G A MB21D2 Missense_Mutation p.S221F 0.34 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3J5-06 3 193174929 193174929 C T ATP13A4 Missense_Mutation p.G592E 0.67 tolerated(0.42) probably_damaging(0.998) TCGA-EE-A3J5-06 3 194063009 194063009 G A CPN2 Silent p.F141F 0.75 TCGA-EE-A3J5-06 3 195594450 195594450 G A TNK2 Silent p.L970L 0.24 TCGA-EE-A3J5-06 3 196288357 196288357 G A WDR53 5'UTR 0.68 TCGA-EE-A3J5-06 3 19959780 19959780 C T EFHB Missense_Mutation p.G374E 0.29 tolerated(0.19) benign(0.066) TCGA-EE-A3J5-06 3 20212610 20212610 T C SGOL1 Missense_Mutation p.K466R 0.48 tolerated(0.26) benign(0.192) TCGA-EE-A3J5-06 3 27465562 27465564 CCA - SLC4A7 In_Frame_Del p.G402del 0.17 TCGA-EE-A3J5-06 3 3144438 3144438 C T IL5RA Nonsense_Mutation p.W50* 0.44 TCGA-EE-A3J5-06 3 32933161 32933161 A T TRIM71 Missense_Mutation p.E822V 0.32 deleterious(0.05) benign(0.244) TCGA-EE-A3J5-06 3 33065796 33065796 G A GLB1 Missense_Mutation p.P364S 0.33 deleterious(0.04) possibly_damaging(0.589) TCGA-EE-A3J5-06 3 33908070 33908070 C T PDCD6IP 3'UTR 0.31 TCGA-EE-A3J5-06 3 35723349 35723349 G A ARPP21 Missense_Mutation p.E36K 0.33 tolerated(0.23) benign(0.236) TCGA-EE-A3J5-06 3 36778828 36778828 G A DCLK3 Silent p.D441D 0.33 TCGA-EE-A3J5-06 3 36874038 36874038 C T TRANK1 Missense_Mutation p.E2302K 0.29 tolerated(0.2) benign(0.424) TCGA-EE-A3J5-06 3 38348792 38348792 C T SLC22A14 Silent p.I188I 0.31 TCGA-EE-A3J5-06 3 38622518 38622518 G A SCN5A Silent p.P1044P 0.42 TCGA-EE-A3J5-06 3 38622519 38622519 G A SCN5A Missense_Mutation p.P1044L 0.40 tolerated(0.28) benign(0.009) TCGA-EE-A3J5-06 3 38645571 38645571 G A SCN5A Missense_Mutation p.H508Y 0.33 tolerated(1) benign(0.051) TCGA-EE-A3J5-06 3 38655513 38655513 C T SCN5A Missense_Mutation p.R219Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 3 38739327 38739327 C T SCN10A Missense_Mutation p.G1795E 0.37 deleterious(0) probably_damaging(0.96) TCGA-EE-A3J5-06 3 38802817 38802817 G A SCN10A Missense_Mutation p.T250I 0.24 tolerated(0.05) benign(0.199) TCGA-EE-A3J5-06 3 3887761 3887761 G A LRRN1 Missense_Mutation p.S479N 0.37 tolerated(0.13) benign(0.013) TCGA-EE-A3J5-06 3 38889119 38889119 C T SCN11A Missense_Mutation p.R1481Q 0.31 deleterious(0.02) probably_damaging(0.915) TCGA-EE-A3J5-06 3 39178409 39178409 G A TTC21A Missense_Mutation p.E1046K 0.26 tolerated(0.11) benign(0.028) TCGA-EE-A3J5-06 3 39226579 39226579 G A XIRP1 Missense_Mutation p.S1453F 0.35 tolerated(0.05) benign(0.016) TCGA-EE-A3J5-06 3 39374842 39374842 C T CCR8 Silent p.S340S 0.47 TCGA-EE-A3J5-06 3 46009090 46009090 G A FYCO1 Missense_Mutation p.S579F 0.31 deleterious(0.01) possibly_damaging(0.815) TCGA-EE-A3J5-06 3 46009799 46009799 T C FYCO1 Missense_Mutation p.M343V 0.25 tolerated(0.34) benign(0) TCGA-EE-A3J5-06 3 46620721 46620721 G A TDGF1 Splice_Site p.X30_splice 0.37 TCGA-EE-A3J5-06 3 47049645 47049645 C T NBEAL2 Missense_Mutation p.T2563I 0.33 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A3J5-06 3 47163857 47163857 G A SETD2 Nonsense_Mutation p.Q757* 0.31 TCGA-EE-A3J5-06 3 4725174 4725174 C T ITPR1 Missense_Mutation p.A1074V 0.30 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J5-06 3 4725214 4725214 G A ITPR1 Silent p.E1087E 0.28 TCGA-EE-A3J5-06 3 47452835 47452835 G A PTPN23 Missense_Mutation p.G1183S 0.28 benign(0.076) TCGA-EE-A3J5-06 3 48222259 48222259 C G CDC25A Missense_Mutation p.E167D 0.37 tolerated(0.46) benign(0.052) TCGA-EE-A3J5-06 3 48451458 48451458 C T PLXNB1 Silent p.E1878E 0.32 TCGA-EE-A3J5-06 3 48461454 48461454 G A PLXNB1 Silent p.S747S 0.41 TCGA-EE-A3J5-06 3 48619375 48619375 C T COL7A1 Missense_Mutation p.G1546E 0.36 unknown(0) TCGA-EE-A3J5-06 3 48623831 48623831 C T COL7A1 Missense_Mutation p.V1162I 0.38 unknown(0) TCGA-EE-A3J5-06 3 48629639 48629639 G A COL7A1 Missense_Mutation p.S379L 0.39 unknown(0) TCGA-EE-A3J5-06 3 48696909 48696909 G A CELSR3 Silent p.I1053I 0.35 TCGA-EE-A3J5-06 3 49028019 49028019 C T P4HTM Silent p.P110P 0.47 TCGA-EE-A3J5-06 3 49139280 49139280 G A QARS Silent p.A228A 0.26 TCGA-EE-A3J5-06 3 49163917 49163917 G A LAMB2 Missense_Mutation p.P678S 0.22 tolerated(0.18) benign(0.007) TCGA-EE-A3J5-06 3 49169764 49169764 G A LAMB2 Silent p.I108I 0.36 TCGA-EE-A3J5-06 3 49362169 49362169 C T USP4 Missense_Mutation p.D221N 0.28 deleterious(0.04) possibly_damaging(0.578) TCGA-EE-A3J5-06 3 49699004 49699004 G A BSN Silent p.K3242K 0.24 TCGA-EE-A3J5-06 3 49751367 49751367 C T RNF123 Silent p.L954L 0.34 TCGA-EE-A3J5-06 3 49897956 49897956 C T CAMKV Missense_Mutation p.E268K 0.20 deleterious(0.02) probably_damaging(0.913) TCGA-EE-A3J5-06 3 49948123 49948123 C T MON1A Missense_Mutation p.G367S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 3 50152983 50152983 C T RBM5 Silent p.R654R 0.42 TCGA-EE-A3J5-06 3 50329971 50329971 G A IFRD2 5'Flank 0.26 TCGA-EE-A3J5-06 3 50421744 50421744 C T CACNA2D2 Missense_Mutation p.E179K 0.37 tolerated(0.08) benign(0.158) TCGA-EE-A3J5-06 3 50684626 50684626 G A MAPKAPK3 Missense_Mutation p.E330K 0.20 tolerated(0.12) benign(0.035) TCGA-EE-A3J5-06 3 51430373 51430373 G A RBM15B Missense_Mutation p.D515N 0.27 tolerated(0.2) benign(0.066) TCGA-EE-A3J5-06 3 51718542 51718542 C T TEX264 Silent p.S124S 0.38 TCGA-EE-A3J5-06 3 51752204 51752204 T C GRM2 3'UTR 0.38 TCGA-EE-A3J5-06 3 51929125 51929125 G A IQCF1 Silent p.S133S 0.28 TCGA-EE-A3J5-06 3 51929126 51929126 G A IQCF1 Missense_Mutation p.S133F 0.28 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J5-06 3 52381849 52381849 G A DNAH1 Silent p.K655K 0.38 TCGA-EE-A3J5-06 3 52472946 52472946 G A SEMA3G Missense_Mutation p.S500F 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 3 52525995 52525995 G A NISCH Missense_Mutation p.E1338K 0.27 tolerated(0.74) benign(0.004) TCGA-EE-A3J5-06 3 54958810 54958810 T C LRTM1 Missense_Mutation p.N147S 0.34 deleterious(0.01) probably_damaging(0.936) TCGA-EE-A3J5-06 3 55984567 55984567 C T ERC2 Silent p.K763K 0.33 TCGA-EE-A3J5-06 3 56651568 56651568 C T CCDC66 Missense_Mutation p.P758S 0.38 tolerated(0.6) benign(0.094) TCGA-EE-A3J5-06 3 57143616 57143616 G A IL17RD Missense_Mutation p.P167S 0.37 deleterious(0) probably_damaging(0.937) TCGA-EE-A3J5-06 3 57496666 57496666 G A DNAH12 Missense_Mutation p.P107L 0.32 deleterious(0) possibly_damaging(0.88) TCGA-EE-A3J5-06 3 57570183 57570183 C T ARF4 Missense_Mutation p.D26N 0.38 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A3J5-06 3 58141738 58141738 C T FLNB Missense_Mutation p.P2306L 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 3 62153757 62153757 C T PTPRG Missense_Mutation p.S318F 0.30 tolerated(1) benign(0.002) TCGA-EE-A3J5-06 3 62499338 62499338 G A CADPS Intron 0.30 TCGA-EE-A3J5-06 3 64582641 64582641 G A ADAMTS9 Silent p.S1348S 0.32 TCGA-EE-A3J5-06 3 7188172 7188172 G A GRM7 Missense_Mutation p.E185K 0.39 tolerated(0.5) probably_damaging(0.995) TCGA-EE-A3J5-06 3 77542460 77542460 C T ROBO2 Missense_Mutation p.R261C 0.32 tolerated(0.06) possibly_damaging(0.898) TCGA-EE-A3J5-06 3 77656968 77656968 G A ROBO2 Silent p.K1068K 0.31 TCGA-EE-A3J5-06 3 85961584 85961584 G A CADM2 Silent p.L190L 0.29 TCGA-EE-A3J5-06 3 89448670 89448670 G A EPHA3 Intron 0.52 TCGA-EE-A3J5-06 3 93813945 93813945 C T NSUN3 Silent p.S230S 0.34 TCGA-EE-A3J5-06 3 97356754 97356754 G A EPHA6 Missense_Mutation p.G871E 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J5-06 3 97727839 97727839 G A GABRR3 Intron 0.24 TCGA-EE-A3J5-06 3 97852230 97852230 C T OR5H1 Missense_Mutation p.S230F 0.50 deleterious(0.02) probably_damaging(0.977) TCGA-EE-A3J5-06 3 97983995 97983995 G A OR5H6 Missense_Mutation p.M289I 0.33 tolerated(0.43) benign(0.006) TCGA-EE-A3J5-06 3 9871027 9871027 G A TTLL3 Missense_Mutation p.R644Q 0.26 deleterious(0.01) benign(0.342) TCGA-EE-A3J5-06 3 9871028 9871028 G A TTLL3 Silent p.R644R 0.25 TCGA-EE-A3J5-06 3 9982706 9982706 T C CRELD1 Silent p.C211C 0.25 TCGA-EE-A3J5-06 4 100052902 100052902 G A ADH4 Missense_Mutation p.S199L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 4 100125397 100125397 G A ADH6 Silent p.I369I 0.22 TCGA-EE-A3J5-06 4 100232806 100232806 G A ADH1B Missense_Mutation p.S279F 0.25 deleterious(0) probably_damaging(0.974) TCGA-EE-A3J5-06 4 100787272 100787272 G A DAPP1 Nonsense_Mutation p.W256* 0.33 TCGA-EE-A3J5-06 4 103228746 103228746 G A SLC39A8 Silent p.F133F 0.31 TCGA-EE-A3J5-06 4 103645099 103645099 G A MANBA Missense_Mutation p.L100F 0.17 tolerated(1) benign(0.002) TCGA-EE-A3J5-06 4 103790221 103790221 G A CISD2 5'UTR 0.27 TCGA-EE-A3J5-06 4 107037521 107037521 G A TBCK Silent p.I750I 0.43 TCGA-EE-A3J5-06 4 111436584 111436584 C T ENPEP Nonsense_Mutation p.Q499* 0.35 TCGA-EE-A3J5-06 4 114279819 114279819 C T ANK2 Missense_Mutation p.P3349S 0.16 probably_damaging(1) TCGA-EE-A3J5-06 4 114452426 114452426 G A CAMK2D Missense_Mutation p.P183S 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3J5-06 4 115998221 115998221 T A NDST4 5'UTR 0.36 TCGA-EE-A3J5-06 4 118975654 118975654 C T NDST3 Missense_Mutation p.P197S 0.35 tolerated(0.12) benign(0.017) TCGA-EE-A3J5-06 4 119673858 119673858 A C SEC24D Missense_Mutation p.I536S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 4 119948050 119948050 G A SYNPO2 Missense_Mutation p.G176R 0.14 tolerated(0.34) benign(0.012) TCGA-EE-A3J5-06 4 120481508 120481508 G T PDE5A Missense_Mutation p.S381Y 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3J5-06 4 1206091 1206091 G A CTBP1 Silent p.A420A 0.14 TCGA-EE-A3J5-06 4 123140656 123140656 T C KIAA1109 Silent p.L803L 0.41 TCGA-EE-A3J5-06 4 126242404 126242404 C T FAT4 Missense_Mutation p.S1613L 0.25 possibly_damaging(0.698) TCGA-EE-A3J5-06 4 126373837 126373837 C T FAT4 Missense_Mutation p.P3889L 0.30 benign(0.032) TCGA-EE-A3J5-06 4 13543814 13543814 C T NKX3-2 Missense_Mutation p.D269N 0.31 deleterious(0) probably_damaging(0.961) TCGA-EE-A3J5-06 4 141317281 141317281 A G CLGN Silent p.F321F 0.39 TCGA-EE-A3J5-06 4 141560538 141560538 G A TBC1D9 Silent p.F794F 0.32 TCGA-EE-A3J5-06 4 141583175 141583175 C T TBC1D9 Missense_Mutation p.E559K 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 4 144133488 144133488 T A USP38 Silent p.P505P 0.36 TCGA-EE-A3J5-06 4 144354740 144354740 C T GAB1 Missense_Mutation p.S155F 0.39 tolerated(0.71) benign(0.002) TCGA-EE-A3J5-06 4 144797983 144797983 C T GYPE Silent p.A54A 0.42 TCGA-EE-A3J5-06 4 145628392 145628392 G A HHIP Missense_Mutation p.M379I 0.25 deleterious(0.03) benign(0.17) TCGA-EE-A3J5-06 4 145635421 145635421 C T HHIP Missense_Mutation p.P490S 0.38 tolerated(0.55) benign(0) TCGA-EE-A3J5-06 4 146560419 146560419 C T MMAA Missense_Mutation p.P43L 0.41 tolerated_low_confidence(0.15) benign(0.003) TCGA-EE-A3J5-06 4 147830357 147830357 C T TTC29 Missense_Mutation p.R74Q 0.14 tolerated(0.23) benign(0.014) TCGA-EE-A3J5-06 4 152054327 152054327 A T SH3D19 Missense_Mutation p.S593T 0.34 deleterious(0.05) possibly_damaging(0.882) TCGA-EE-A3J5-06 4 154191521 154191521 C T TRIM2 Missense_Mutation p.P22L 0.21 tolerated_low_confidence(0.98) benign(0) TCGA-EE-A3J5-06 4 154502638 154502638 T G KIAA0922 Missense_Mutation p.F273C 0.59 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A3J5-06 4 154624117 154624117 G A TLR2 Missense_Mutation p.E20K 0.44 tolerated(0.12) benign(0.033) TCGA-EE-A3J5-06 4 155241573 155241573 A G DCHS2 Missense_Mutation p.S1205P 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-EE-A3J5-06 4 155252741 155252741 C T DCHS2 Missense_Mutation p.G787R 0.26 tolerated(0.61) benign(0.001) TCGA-EE-A3J5-06 4 155505322 155505322 G A FGA Missense_Mutation p.S852F 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 4 158057631 158057631 T C GLRB Missense_Mutation p.V103A 0.26 deleterious(0) possibly_damaging(0.766) TCGA-EE-A3J5-06 4 16189852 16189852 G A TAPT1 Missense_Mutation p.L247F 0.39 tolerated(0.5) benign(0.046) TCGA-EE-A3J5-06 4 164272777 164272777 T C NPY5R 3'UTR 0.53 TCGA-EE-A3J5-06 4 166976365 166976365 G A TLL1 Missense_Mutation p.M554I 0.18 tolerated(0.44) benign(0.013) TCGA-EE-A3J5-06 4 166996156 166996156 G A TLL1 Splice_Site p.X772_splice 0.33 TCGA-EE-A3J5-06 4 167921567 167921567 G A SPOCK3 Missense_Mutation p.H98Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 4 167921568 167921568 G A SPOCK3 Silent p.R97R 0.19 TCGA-EE-A3J5-06 4 169138132 169138132 G A DDX60 Silent p.A1697A 0.39 TCGA-EE-A3J5-06 4 169195117 169195117 C T DDX60 Missense_Mutation p.D808N 0.40 deleterious(0.02) benign(0.159) TCGA-EE-A3J5-06 4 169353714 169353714 G A DDX60L Missense_Mutation p.P470S 0.27 tolerated(0.06) possibly_damaging(0.566) TCGA-EE-A3J5-06 4 1695353 1695353 G A SLBP Missense_Mutation p.P262S 0.24 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-EE-A3J5-06 4 169611810 169611810 C T PALLD Silent p.V464V 0.38 TCGA-EE-A3J5-06 4 170913224 170913224 G T MFAP3L Missense_Mutation p.L179I 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J5-06 4 17506047 17506047 G A QDPR Missense_Mutation p.L84F 0.32 tolerated(0.48) benign(0.176) TCGA-EE-A3J5-06 4 175897037 175897037 G A ADAM29 Missense_Mutation p.G121R 0.32 deleterious(0.02) probably_damaging(0.951) TCGA-EE-A3J5-06 4 175897656 175897656 C T ADAM29 Missense_Mutation p.S327L 0.25 deleterious(0) benign(0.285) TCGA-EE-A3J5-06 4 185038969 185038969 C T ENPP6 Silent p.R206R 0.41 TCGA-EE-A3J5-06 4 185550603 185550603 A G CASP3 Silent p.L219L 0.44 TCGA-EE-A3J5-06 4 25256861 25256861 C T PI4K2B Missense_Mutation p.H200Y 0.33 tolerated(0.1) possibly_damaging(0.699) TCGA-EE-A3J5-06 4 26432342 26432342 C T RBPJ Missense_Mutation p.P406S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 4 265953 265953 G A ZNF732 Silent p.I231I 0.11 TCGA-EE-A3J5-06 4 266376 266376 C T ZNF732 Silent p.G90G 0.17 TCGA-EE-A3J5-06 4 3227430 3227430 C T HTT Missense_Mutation p.P2603L 0.25 benign(0.004) TCGA-EE-A3J5-06 4 3227431 3227431 C T HTT Silent p.P2603P 0.25 TCGA-EE-A3J5-06 4 36231067 36231067 G A ARAP2 Silent p.F14F 0.39 TCGA-EE-A3J5-06 4 38799864 38799864 G A TLR1 Missense_Mutation p.P197S 0.26 tolerated(0.14) probably_damaging(1) TCGA-EE-A3J5-06 4 40351256 40351256 C T CHRNA9 Silent p.I241I 0.28 TCGA-EE-A3J5-06 4 42448650 42448650 C T ATP8A1 Missense_Mutation p.G970R 0.34 tolerated(0.26) benign(0.186) TCGA-EE-A3J5-06 4 42588400 42588400 C T ATP8A1 Missense_Mutation p.D230N 0.22 tolerated(0.13) possibly_damaging(0.594) TCGA-EE-A3J5-06 4 42895506 42895506 A G GRXCR1 Missense_Mutation p.N75D 0.29 tolerated(0.6) benign(0.001) TCGA-EE-A3J5-06 4 46060605 46060605 C T GABRG1 Nonsense_Mutation p.W220* 0.36 TCGA-EE-A3J5-06 4 46252357 46252357 T A GABRA2 Missense_Mutation p.N442Y 0.35 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J5-06 4 46979602 46979602 T C GABRA4 Missense_Mutation p.R107G 0.27 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 4 47408880 47408880 G A GABRB1 Silent p.K339K 0.43 TCGA-EE-A3J5-06 4 48148370 48148370 A C TEC Missense_Mutation p.N351K 0.21 tolerated(1) benign(0.013) TCGA-EE-A3J5-06 4 48990633 48990633 G A CWH43 Nonsense_Mutation p.W61* 0.33 TCGA-EE-A3J5-06 4 53731991 53731991 G A RASL11B 3'UTR 0.41 TCGA-EE-A3J5-06 4 54362369 54362369 C T LNX1 Missense_Mutation p.E391K 0.45 deleterious(0) possibly_damaging(0.9) TCGA-EE-A3J5-06 4 5624321 5624321 G A EVC2 Missense_Mutation p.P815L 0.50 tolerated(0.21) benign(0.003) TCGA-EE-A3J5-06 4 56342132 56342132 C A CLOCK Nonsense_Mutation p.E116* 0.18 TCGA-EE-A3J5-06 4 56758871 56758871 C T EXOC1 Missense_Mutation p.S573L 0.28 tolerated(0.32) benign(0.002) TCGA-EE-A3J5-06 4 57312971 57312971 C T PAICS Missense_Mutation p.L116F 0.20 benign(0.176) TCGA-EE-A3J5-06 4 57796622 57796622 C T REST Missense_Mutation p.P533L 0.39 deleterious(0.03) benign(0.125) TCGA-EE-A3J5-06 4 62845330 62845330 G A LPHN3 Missense_Mutation p.G884E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 4 6325235 6325235 C T PPP2R2C Missense_Mutation p.E380K 0.39 tolerated(0.06) possibly_damaging(0.545) TCGA-EE-A3J5-06 4 68780365 68780365 C T TMPRSS11A Missense_Mutation p.D349N 0.20 tolerated(0.17) benign(0.066) TCGA-EE-A3J5-06 4 69519838 69519838 C T UGT2B15 Silent p.K410K 0.25 TCGA-EE-A3J5-06 4 69681793 69681793 C T UGT2B10 Missense_Mutation p.S19F 0.40 tolerated(0.19) benign(0.021) TCGA-EE-A3J5-06 4 69693137 69693137 C T UGT2B10 Missense_Mutation p.P393L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 4 70505078 70505078 G A UGT2A2 Missense_Mutation p.S94F 0.27 tolerated(0.08) benign(0.005) TCGA-EE-A3J5-06 4 70823171 70823171 G A CSN2 Nonsense_Mutation p.Q166* 0.38 TCGA-EE-A3J5-06 4 71099816 71099816 C T FDCSP Missense_Mutation p.P57L 0.43 tolerated_low_confidence(0.16) possibly_damaging(0.851) TCGA-EE-A3J5-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.21 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-EE-A3J5-06 4 71275446 71275446 A G PROL1 Missense_Mutation p.Y134C 0.39 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-EE-A3J5-06 4 71346543 71346543 G A MUC7 Missense_Mutation p.E28K 0.23 tolerated(1) benign(0.014) TCGA-EE-A3J5-06 4 71462722 71462722 C T AMBN Missense_Mutation p.P31S 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3J5-06 4 71500276 71500276 A G ENAM Silent p.Q154Q 0.19 TCGA-EE-A3J5-06 4 72120974 72120974 G A SLC4A4 Silent p.K37K 0.31 TCGA-EE-A3J5-06 4 73012984 73012984 G A NPFFR2 Missense_Mutation p.G342R 0.33 tolerated(0.14) probably_damaging(0.953) TCGA-EE-A3J5-06 4 74279225 74279225 C T ALB Missense_Mutation p.S311F 0.39 tolerated(0.06) possibly_damaging(0.593) TCGA-EE-A3J5-06 4 74608189 74608189 C T IL8 3'UTR 0.47 TCGA-EE-A3J5-06 4 75673322 75673322 C T BTC Missense_Mutation p.E156K 0.15 tolerated(0.06) probably_damaging(0.947) TCGA-EE-A3J5-06 4 76489701 76489701 A G C4orf26 Silent p.R163R 0.15 TCGA-EE-A3J5-06 4 79229258 79229258 G A FRAS1 Missense_Mutation p.E525K 0.32 benign(0.005) TCGA-EE-A3J5-06 4 79295384 79295384 C T FRAS1 Missense_Mutation p.H1044Y 0.35 benign(0.001) TCGA-EE-A3J5-06 4 79308609 79308609 C T FRAS1 Silent p.I1243I 0.41 TCGA-EE-A3J5-06 4 80328327 80328327 C T GK2 Missense_Mutation p.G343E 0.26 tolerated(0.97) benign(0.001) TCGA-EE-A3J5-06 4 8416089 8416089 A G ACOX3 Missense_Mutation p.L158P 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 4 85724567 85724567 G A WDFY3 Missense_Mutation p.A828V 0.19 tolerated(0.15) benign(0.004) TCGA-EE-A3J5-06 4 8616153 8616153 G T CPZ Missense_Mutation p.K477N 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 4 8616156 8616156 C T CPZ Silent p.F478F 0.36 TCGA-EE-A3J5-06 4 88047467 88047467 C T AFF1 Silent p.S930S 0.26 TCGA-EE-A3J5-06 4 88401667 88401667 C T SPARCL1 Silent p.K558K 0.40 TCGA-EE-A3J5-06 4 89061118 89061118 G A ABCG2 Silent p.I10I 0.34 TCGA-EE-A3J5-06 4 89576354 89576354 T C HERC3 Silent p.G269G 0.27 TCGA-EE-A3J5-06 4 94128596 94128596 C T GRID2 Silent p.I259I 0.29 TCGA-EE-A3J5-06 4 94159568 94159568 G A GRID2 Missense_Mutation p.G391E 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3J5-06 4 9783968 9783968 T C DRD5 Silent p.G105G 0.45 TCGA-EE-A3J5-06 5 11022919 11022919 G A CTNND2 Silent p.I987I 0.41 TCGA-EE-A3J5-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.08 TCGA-EE-A3J5-06 5 11082893 11082893 G A CTNND2 Silent p.L901L 0.14 TCGA-EE-A3J5-06 5 11199605 11199605 A G CTNND2 Silent p.L644L 0.09 TCGA-EE-A3J5-06 5 112173567 112173567 C T APC Missense_Mutation p.A759V 0.18 probably_damaging(0.999) TCGA-EE-A3J5-06 5 114499295 114499295 G A TRIM36 Missense_Mutation p.S73L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 5 115146917 115146917 T C CDO1 Missense_Mutation p.N115S 0.14 tolerated(0.75) possibly_damaging(0.648) TCGA-EE-A3J5-06 5 115341615 115341615 C T AQPEP Missense_Mutation p.P682S 0.39 tolerated(0.06) possibly_damaging(0.544) TCGA-EE-A3J5-06 5 118970116 118970116 G A FAM170A Missense_Mutation p.E225K 0.14 deleterious(0.01) possibly_damaging(0.836) TCGA-EE-A3J5-06 5 1219126 1219126 G A SLC6A19 Missense_Mutation p.G428R 0.50 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 5 127671155 127671155 G A FBN2 Missense_Mutation p.S1280L 0.16 deleterious(0) benign(0.322) TCGA-EE-A3J5-06 5 127671209 127671209 C T FBN2 Missense_Mutation p.G1262E 0.50 deleterious(0) probably_damaging(0.979) TCGA-EE-A3J5-06 5 129072803 129072803 C T ADAMTS19 Silent p.Y1172Y 0.53 TCGA-EE-A3J5-06 5 132101146 132101146 T A SEPT8 Missense_Mutation p.S36C 0.15 deleterious(0.01) probably_damaging(0.91) TCGA-EE-A3J5-06 5 137498918 137498918 G A BRD8 Missense_Mutation p.P663L 0.46 deleterious(0) probably_damaging(0.96) TCGA-EE-A3J5-06 5 13788875 13788875 C T DNAH5 Missense_Mutation p.G2866E 0.08 probably_damaging(0.931) TCGA-EE-A3J5-06 5 13794139 13794139 C T DNAH5 Missense_Mutation p.R2639Q 0.56 possibly_damaging(0.553) TCGA-EE-A3J5-06 5 13824440 13824440 A C DNAH5 Silent p.V2149V 0.60 TCGA-EE-A3J5-06 5 139862184 139862184 G A ANKHD1 Missense_Mutation p.G601E 0.09 unknown(0) TCGA-EE-A3J5-06 5 140175450 140175450 G A PCDHA2 Missense_Mutation p.E301K 0.18 deleterious_low_confidence(0.02) benign(0.113) TCGA-EE-A3J5-06 5 140176856 140176856 C T PCDHA2 Silent p.L769L 0.10 TCGA-EE-A3J5-06 5 140181170 140181170 G A PCDHA3 Missense_Mutation p.A130T 0.50 deleterious_low_confidence(0) benign(0.198) TCGA-EE-A3J5-06 5 140188875 140188875 C T PCDHA4 Silent p.I701I 0.09 TCGA-EE-A3J5-06 5 140203457 140203457 G A PCDHA5 Silent p.L699L 0.09 TCGA-EE-A3J5-06 5 140208718 140208718 C T PCDHA6 Missense_Mutation p.P348S 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3J5-06 5 140228437 140228437 G A PCDHA9 Silent p.V119V 0.65 TCGA-EE-A3J5-06 5 140249145 140249145 C T PCDHA11 Missense_Mutation p.P153S 0.52 tolerated_low_confidence(0.09) possibly_damaging(0.846) TCGA-EE-A3J5-06 5 140256676 140256676 C A PCDHA12 Missense_Mutation p.A540D 0.51 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EE-A3J5-06 5 140347604 140347604 C T PCDHAC2 Missense_Mutation p.S418F 0.11 tolerated(0.05) benign(0.143) TCGA-EE-A3J5-06 5 140474567 140474567 G A PCDHB2 Missense_Mutation p.G65R 0.15 tolerated_low_confidence(0.16) possibly_damaging(0.507) TCGA-EE-A3J5-06 5 140515442 140515442 C T PCDHB5 Silent p.I142I 0.47 TCGA-EE-A3J5-06 5 140516330 140516330 C T PCDHB5 Silent p.V438V 0.51 TCGA-EE-A3J5-06 5 140553107 140553107 C T PCDHB7 Silent p.L231L 0.45 TCGA-EE-A3J5-06 5 140558223 140558223 G A PCDHB8 Missense_Mutation p.R203Q 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-EE-A3J5-06 5 140558692 140558692 G A PCDHB8 Silent p.E359E 0.12 TCGA-EE-A3J5-06 5 140562668 140562668 C T PCDHB16 Silent p.F178F 0.36 TCGA-EE-A3J5-06 5 140564423 140564423 G A PCDHB16 Silent p.E763E 0.45 TCGA-EE-A3J5-06 5 140625297 140625297 G A PCDHB15 Missense_Mutation p.D51N 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.687) TCGA-EE-A3J5-06 5 140625947 140625947 G A PCDHB15 Silent p.R267R 0.15 TCGA-EE-A3J5-06 5 140710953 140710953 T A PCDHGA1 Missense_Mutation p.D234E 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3J5-06 5 140720594 140720594 G A PCDHGA2 Missense_Mutation p.D686N 0.13 tolerated_low_confidence(0.08) benign(0.009) TCGA-EE-A3J5-06 5 140731925 140731925 C T PCDHGB1 Missense_Mutation p.L700F 0.13 tolerated(0.06) benign(0.132) TCGA-EE-A3J5-06 5 140764153 140764153 C T PCDHGA7 Silent p.L563L 0.13 TCGA-EE-A3J5-06 5 140792983 140792983 C T PCDHGA10 Silent p.L81L 0.45 TCGA-EE-A3J5-06 5 140807510 140807510 C T PCDHGB6 Intron 0.09 TCGA-EE-A3J5-06 5 140857731 140857731 C T PCDHGC3 Missense_Mutation p.P683L 0.43 deleterious(0.05) benign(0.069) TCGA-EE-A3J5-06 5 141027087 141027087 C T FCHSD1 Missense_Mutation p.A236T 0.43 tolerated(0.13) benign(0.017) TCGA-EE-A3J5-06 5 141248677 141248677 G A PCDH1 Silent p.L120L 0.45 TCGA-EE-A3J5-06 5 142593624 142593624 C T ARHGAP26 Missense_Mutation p.S776L 0.38 deleterious(0) possibly_damaging(0.905) TCGA-EE-A3J5-06 5 142779434 142779434 A T NR3C1 Missense_Mutation p.V324E 0.45 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 5 143853255 143853255 G A KCTD16 Missense_Mutation p.D289N 0.11 tolerated(0.19) benign(0.002) TCGA-EE-A3J5-06 5 145246173 145246173 G A GRXCR2 Missense_Mutation p.A152V 0.14 tolerated(0.32) benign(0.009) TCGA-EE-A3J5-06 5 145493560 145493560 G A LARS 3'UTR 0.50 TCGA-EE-A3J5-06 5 145851121 145851121 C T TCERG1 Missense_Mutation p.P528L 0.06 deleterious(0.02) unknown(0) TCGA-EE-A3J5-06 5 147012260 147012260 G A JAKMIP2 Nonsense_Mutation p.R587* 0.44 TCGA-EE-A3J5-06 5 147029951 147029951 G A JAKMIP2 Nonsense_Mutation p.R263* 0.17 TCGA-EE-A3J5-06 5 1494882 1494882 G A LPCAT1 Silent p.I142I 0.10 TCGA-EE-A3J5-06 5 149678065 149678065 G A ARSI Missense_Mutation p.S141F 0.40 deleterious(0) possibly_damaging(0.832) TCGA-EE-A3J5-06 5 149782767 149782767 C T CD74 Missense_Mutation p.G245E 0.09 tolerated(0.09) possibly_damaging(0.636) TCGA-EE-A3J5-06 5 150489374 150489374 A C ANXA6 Missense_Mutation p.S542A 0.12 deleterious(0.01) benign(0.224) TCGA-EE-A3J5-06 5 150923520 150923520 C G FAT2 Missense_Mutation p.E2390Q 0.55 probably_damaging(0.994) TCGA-EE-A3J5-06 5 150935938 150935938 C T FAT2 Silent p.L1200L 0.11 TCGA-EE-A3J5-06 5 151784013 151784013 G A NMUR2 Missense_Mutation p.S221F 0.50 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 5 156816271 156816271 C T CYFIP2 Silent p.V1068V 0.18 TCGA-EE-A3J5-06 5 156926622 156926622 C T ADAM19 Missense_Mutation p.G453R 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3J5-06 5 156957821 156957821 C T ADAM19 Missense_Mutation p.G134E 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 5 157053673 157053673 G A SOX30 Missense_Mutation p.P646L 0.44 deleterious(0) probably_damaging(0.985) TCGA-EE-A3J5-06 5 157078618 157078618 C T SOX30 Missense_Mutation p.E157K 0.41 deleterious_low_confidence(0.04) benign(0.027) TCGA-EE-A3J5-06 5 15928557 15928557 C T FBXL7 Missense_Mutation p.A229V 0.40 deleterious(0.03) possibly_damaging(0.746) TCGA-EE-A3J5-06 5 161300165 161300165 G A GABRA1 Missense_Mutation p.E100K 0.07 tolerated(0.12) probably_damaging(0.989) TCGA-EE-A3J5-06 5 167675102 167675102 C T TENM2 Silent p.I2386I 0.12 TCGA-EE-A3J5-06 5 175772322 175772322 G A SIMC1 Silent p.Q416Q 0.55 TCGA-EE-A3J5-06 5 175843197 175843197 C T CLTB Silent p.Q56Q 0.53 TCGA-EE-A3J5-06 5 176078637 176078637 G A TSPAN17 Silent p.L36L 0.45 TCGA-EE-A3J5-06 5 176301345 176301345 G A UNC5A Missense_Mutation p.D386N 0.09 deleterious(0.03) possibly_damaging(0.628) TCGA-EE-A3J5-06 5 176761405 176761405 C A LMAN2 Splice_Site p.X264_splice 0.56 TCGA-EE-A3J5-06 5 178413331 178413331 C T GRM6 Missense_Mutation p.V642M 0.55 deleterious(0.03) benign(0.14) TCGA-EE-A3J5-06 5 178415981 178415981 C T GRM6 Missense_Mutation p.D437N 0.71 tolerated(0.48) benign(0.02) TCGA-EE-A3J5-06 5 179297444 179297444 G A TBC1D9B Missense_Mutation p.R846C 0.34 deleterious(0.01) benign(0.012) TCGA-EE-A3J5-06 5 180057043 180057043 G A FLT4 Silent p.L192L 0.12 TCGA-EE-A3J5-06 5 180326279 180326279 C T BTNL8 5'UTR 0.17 TCGA-EE-A3J5-06 5 180326310 180326310 C T BTNL8 5'UTR 0.44 TCGA-EE-A3J5-06 5 180335653 180335653 C T BTNL8 Silent p.S39S 0.48 TCGA-EE-A3J5-06 5 180477329 180477329 C T BTNL9 Silent p.L232L 0.56 TCGA-EE-A3J5-06 5 19473519 19473519 G A CDH18 Missense_Mutation p.P730L 0.53 deleterious(0.04) possibly_damaging(0.767) TCGA-EE-A3J5-06 5 24487920 24487920 C T CDH10 Missense_Mutation p.G740E 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 5 31323108 31323108 G A CDH6 Missense_Mutation p.R689Q 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3J5-06 5 32089355 32089355 G A PDZD2 Missense_Mutation p.R1934Q 0.15 tolerated(0.19) benign(0.018) TCGA-EE-A3J5-06 5 35070248 35070248 C T PRLR Silent p.A221A 0.52 TCGA-EE-A3J5-06 5 35876305 35876305 C T IL7R Missense_Mutation p.S366F 0.42 deleterious(0) possibly_damaging(0.532) TCGA-EE-A3J5-06 5 36039784 36039784 A G UGT3A2 Silent p.F290F 0.24 TCGA-EE-A3J5-06 5 36049520 36049520 C T UGT3A2 Missense_Mutation p.G105E 0.18 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 5 37167250 37167250 T C C5orf42 Silent p.L2433L 0.45 TCGA-EE-A3J5-06 5 38352349 38352349 C T EGFLAM Missense_Mutation p.S154L 0.09 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EE-A3J5-06 5 39153581 39153581 G A FYB Missense_Mutation p.P431S 0.52 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 5 40835334 40835334 C T RPL37 5'UTR 0.22 TCGA-EE-A3J5-06 5 41010144 41010144 G A MROH2B Missense_Mutation p.P1058L 0.41 deleterious(0.04) probably_damaging(0.975) TCGA-EE-A3J5-06 5 41049481 41049481 C T MROH2B Missense_Mutation p.E468K 0.17 tolerated(0.66) benign(0) TCGA-EE-A3J5-06 5 41057250 41057250 C T MROH2B Missense_Mutation p.E294K 0.41 tolerated(0.32) benign(0.052) TCGA-EE-A3J5-06 5 41203208 41203208 C T C6 Missense_Mutation p.G42E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.08 TCGA-EE-A3J5-06 5 43556007 43556007 T A PAIP1 Silent p.V120V 0.49 TCGA-EE-A3J5-06 5 45262838 45262838 C T HCN1 Missense_Mutation p.E620K 0.11 deleterious(0.03) probably_damaging(0.972) TCGA-EE-A3J5-06 5 49699026 49699026 T A EMB Missense_Mutation p.K288I 0.53 deleterious(0) possibly_damaging(0.589) TCGA-EE-A3J5-06 5 49707169 49707169 G A EMB Missense_Mutation p.S82F 0.19 deleterious(0) probably_damaging(0.942) TCGA-EE-A3J5-06 5 50129841 50129841 T G PARP8 Missense_Mutation p.F779C 0.58 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 5 54429251 54429251 C T CDC20B Missense_Mutation p.R229Q 0.18 deleterious(0.02) benign(0.008) TCGA-EE-A3J5-06 5 55202046 55202046 T C IL31RA Silent p.D394D 0.48 TCGA-EE-A3J5-06 5 57790723 57790723 C T GAPT Silent p.F120F 0.55 TCGA-EE-A3J5-06 5 60067751 60067751 A T ELOVL7 Missense_Mutation p.F78L 0.48 tolerated(0.74) benign(0.009) TCGA-EE-A3J5-06 5 63509400 63509400 G A RNF180 Missense_Mutation p.G83R 0.19 deleterious(0) probably_damaging(0.979) TCGA-EE-A3J5-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.39 TCGA-EE-A3J5-06 5 71757208 71757208 G A ZNF366 Missense_Mutation p.P39L 0.49 deleterious_low_confidence(0.01) benign(0.155) TCGA-EE-A3J5-06 5 71757209 71757209 G A ZNF366 Missense_Mutation p.P39S 0.49 tolerated_low_confidence(0.22) benign(0.116) TCGA-EE-A3J5-06 5 74695192 74695192 G A COL4A3BP Silent p.S505S 0.50 TCGA-EE-A3J5-06 5 75003612 75003612 A G POC5 Missense_Mutation p.L58S 0.27 tolerated(0.55) benign(0.087) TCGA-EE-A3J5-06 5 75964559 75964559 C T IQGAP2 Silent p.S911S 0.21 TCGA-EE-A3J5-06 5 76332505 76332505 G A AGGF1 Missense_Mutation p.G214E 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J5-06 5 76342465 76342465 T G AGGF1 Missense_Mutation p.S388R 0.14 deleterious(0.04) possibly_damaging(0.578) TCGA-EE-A3J5-06 5 76359010 76359010 T A AGGF1 Missense_Mutation p.F693Y 0.15 deleterious(0.05) probably_damaging(0.987) TCGA-EE-A3J5-06 5 76359011 76359011 C T AGGF1 Silent p.F693F 0.14 TCGA-EE-A3J5-06 5 78417125 78417125 G A BHMT Missense_Mutation p.G188S 0.46 tolerated(0.18) benign(0.071) TCGA-EE-A3J5-06 5 78426765 78426765 G A BHMT Silent p.K349K 0.38 TCGA-EE-A3J5-06 5 79026230 79026230 C T CMYA5 Missense_Mutation p.P548S 0.54 possibly_damaging(0.857) TCGA-EE-A3J5-06 5 79026348 79026348 C T CMYA5 Missense_Mutation p.S587F 0.14 benign(0.228) TCGA-EE-A3J5-06 5 79027796 79027796 C T CMYA5 Missense_Mutation p.P1070S 0.33 probably_damaging(0.992) TCGA-EE-A3J5-06 5 79029407 79029407 C A CMYA5 Missense_Mutation p.P1607T 0.50 benign(0.108) TCGA-EE-A3J5-06 5 79029408 79029408 C T CMYA5 Missense_Mutation p.P1607L 0.50 benign(0.001) TCGA-EE-A3J5-06 5 79029724 79029724 A T CMYA5 Missense_Mutation p.E1712D 0.09 probably_damaging(0.935) TCGA-EE-A3J5-06 5 79031961 79031961 A C CMYA5 Missense_Mutation p.D2458A 0.13 benign(0.039) TCGA-EE-A3J5-06 5 79351785 79351785 C T THBS4 Missense_Mutation p.P157L 0.35 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J5-06 5 80388739 80388739 A T RASGRF2 Missense_Mutation p.I504L 0.17 tolerated(0.22) benign(0.037) TCGA-EE-A3J5-06 5 80409364 80409364 G A RASGRF2 Missense_Mutation p.E699K 0.32 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-EE-A3J5-06 5 82815539 82815539 G A VCAN Missense_Mutation p.D472N 0.42 deleterious(0.03) possibly_damaging(0.698) TCGA-EE-A3J5-06 5 83239320 83239320 C T EDIL3 Missense_Mutation p.R454Q 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-EE-A3J5-06 5 86708573 86708573 G A CCNH Silent p.F13F 0.34 TCGA-EE-A3J5-06 5 89781431 89781431 T C POLR3G Missense_Mutation p.I16T 0.42 deleterious(0) probably_damaging(0.975) TCGA-EE-A3J5-06 5 89953946 89953946 G A GPR98 Missense_Mutation p.E1535K 0.42 possibly_damaging(0.905) TCGA-EE-A3J5-06 5 89968362 89968362 G A GPR98 Splice_Site p.X1585_splice 0.17 TCGA-EE-A3J5-06 5 89981753 89981753 G A GPR98 Missense_Mutation p.G2144E 0.42 probably_damaging(0.999) TCGA-EE-A3J5-06 5 90073770 90073770 G A GPR98 Silent p.R4192R 0.54 TCGA-EE-A3J5-06 5 92929628 92929628 G A NR2F1 3'UTR 0.50 TCGA-EE-A3J5-06 5 94248558 94248558 C T MCTP1 Missense_Mutation p.D492N 0.46 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 5 96249154 96249154 C T ERAP2 Silent p.L884L 0.11 TCGA-EE-A3J5-06 5 9629674 9629674 C T TAS2R1 Silent p.R157R 0.12 TCGA-EE-A3J5-06 6 100056660 100056660 C T PRDM13 Missense_Mutation p.S63F 0.34 deleterious(0.05) probably_damaging(0.929) TCGA-EE-A3J5-06 6 100368900 100368900 G A MCHR2 Silent p.F313F 0.28 TCGA-EE-A3J5-06 6 100404038 100404038 C T MCHR2 5'UTR 0.28 TCGA-EE-A3J5-06 6 100896428 100896428 C T SIM1 Missense_Mutation p.E224K 0.35 deleterious(0) probably_damaging(0.971) TCGA-EE-A3J5-06 6 106552989 106552989 C T PRDM1 Silent p.I318I 0.32 TCGA-EE-A3J5-06 6 106968399 106968399 G A AIM1 Missense_Mutation p.E698K 0.28 tolerated(0.19) probably_damaging(0.998) TCGA-EE-A3J5-06 6 108041760 108041760 G A SCML4 Intron 0.38 TCGA-EE-A3J5-06 6 110734506 110734506 G A DDO Missense_Mutation p.H82Y 0.36 tolerated(1) possibly_damaging(0.786) TCGA-EE-A3J5-06 6 112375546 112375546 C T WISP3 Missense_Mutation p.H14Y 0.32 tolerated_low_confidence(0.48) benign(0.013) TCGA-EE-A3J5-06 6 114379218 114379218 G A HS3ST5 Missense_Mutation p.R82C 0.32 deleterious(0.02) possibly_damaging(0.872) TCGA-EE-A3J5-06 6 11566004 11566004 G A TMEM170B Missense_Mutation p.R68K 0.34 tolerated(0.14) possibly_damaging(0.87) TCGA-EE-A3J5-06 6 116784770 116784770 G A FAM26F Missense_Mutation p.E284K 0.33 tolerated(0.31) benign(0.081) TCGA-EE-A3J5-06 6 116836870 116836870 G C FAM26E Missense_Mutation p.K216N 0.34 deleterious(0) possibly_damaging(0.596) TCGA-EE-A3J5-06 6 117113576 117113576 A T GPRC6A Missense_Mutation p.I837N 0.40 deleterious(0) probably_damaging(0.972) TCGA-EE-A3J5-06 6 117678055 117678055 G A ROS1 Missense_Mutation p.S1293F 0.30 tolerated(0.09) benign(0.006) TCGA-EE-A3J5-06 6 117679003 117679003 G T ROS1 Nonsense_Mutation p.S1273* 0.44 TCGA-EE-A3J5-06 6 117746795 117746795 G A ROS1 Missense_Mutation p.P9S 0.34 tolerated_low_confidence(0.24) benign(0.018) TCGA-EE-A3J5-06 6 119338110 119338110 C T FAM184A Splice_Site p.X445_splice 0.29 TCGA-EE-A3J5-06 6 119623203 119623203 C T MAN1A1 Missense_Mutation p.E256K 0.43 deleterious(0) possibly_damaging(0.662) TCGA-EE-A3J5-06 6 123369783 123369783 G A CLVS2 Missense_Mutation p.R194Q 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A3J5-06 6 128150849 128150849 G A THEMIS Missense_Mutation p.H161Y 0.36 tolerated(0.88) benign(0.287) TCGA-EE-A3J5-06 6 128291379 128291379 G A PTPRK Missense_Mutation p.S1445L 0.28 deleterious_low_confidence(0) benign(0.053) TCGA-EE-A3J5-06 6 128400001 128400001 T C PTPRK Missense_Mutation p.T614A 0.26 deleterious(0) possibly_damaging(0.848) TCGA-EE-A3J5-06 6 128410902 128410902 C T PTPRK Silent p.K466K 0.30 TCGA-EE-A3J5-06 6 129670503 129670503 G A LAMA2 Silent p.R1499R 0.28 TCGA-EE-A3J5-06 6 130762616 130762616 C G TMEM200A Missense_Mutation p.S350C 0.33 tolerated(0.07) possibly_damaging(0.525) TCGA-EE-A3J5-06 6 130762617 130762617 C T TMEM200A Silent p.S350S 0.33 TCGA-EE-A3J5-06 6 130762727 130762727 C T TMEM200A Missense_Mutation p.S387F 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J5-06 6 131924268 131924268 C T MED23 Silent p.R611R 0.43 TCGA-EE-A3J5-06 6 132891536 132891536 C T TAAR6 Missense_Mutation p.P26S 0.45 tolerated(0.33) benign(0.014) TCGA-EE-A3J5-06 6 136683614 136683614 C T MAP7 Silent p.E522E 0.28 TCGA-EE-A3J5-06 6 137019667 137019667 G A MAP3K5 Missense_Mutation p.R256C 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J5-06 6 137245604 137245604 G A SLC35D3 Missense_Mutation p.G341R 0.47 tolerated_low_confidence(0.14) benign(0.019) TCGA-EE-A3J5-06 6 137322615 137322615 C T IL20RA 3'UTR 0.42 TCGA-EE-A3J5-06 6 137322616 137322616 C T IL20RA 3'UTR 0.41 TCGA-EE-A3J5-06 6 137815270 137815270 G A OLIG3 Missense_Mutation p.S13L 0.38 deleterious(0) unknown(0) TCGA-EE-A3J5-06 6 138655863 138655863 C T KIAA1244 Silent p.T1960T 0.44 TCGA-EE-A3J5-06 6 139094851 139094851 G A CCDC28A Missense_Mutation p.E14K 0.35 tolerated_low_confidence(0.18) benign(0) TCGA-EE-A3J5-06 6 144263313 144263313 C T PLAGL1 Missense_Mutation p.E214K 0.28 tolerated(0.28) possibly_damaging(0.64) TCGA-EE-A3J5-06 6 149699566 149699566 C T TAB2 Missense_Mutation p.P172L 0.29 deleterious(0) possibly_damaging(0.836) TCGA-EE-A3J5-06 6 151672703 151672703 C T AKAP12 Silent p.T1059T 0.36 TCGA-EE-A3J5-06 6 151672877 151672877 A G AKAP12 Silent p.P1117P 0.33 TCGA-EE-A3J5-06 6 151939301 151939301 G A CCDC170 3'UTR 0.25 TCGA-EE-A3J5-06 6 152552664 152552664 C T SYNE1 Silent p.V6967V 0.36 TCGA-EE-A3J5-06 6 152949470 152949470 C T SYNE1 5'UTR 0.30 TCGA-EE-A3J5-06 6 153076450 153076450 C G VIP Missense_Mutation p.L93V 0.28 tolerated(0.1) possibly_damaging(0.822) TCGA-EE-A3J5-06 6 154412559 154412559 T G OPRM1 Silent p.T465T 0.43 TCGA-EE-A3J5-06 6 155732417 155732417 C T NOX3 Silent p.R462R 0.34 TCGA-EE-A3J5-06 6 158565364 158565364 A G SERAC1 Silent p.F192F 0.29 TCGA-EE-A3J5-06 6 159458115 159458115 C T TAGAP Missense_Mutation p.D314N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J5-06 6 160211650 160211650 T C MRPL18 Missense_Mutation p.F11L 0.20 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J5-06 6 160551162 160551162 G A SLC22A1 Nonsense_Mutation p.W146* 0.26 TCGA-EE-A3J5-06 6 160553263 160553263 G A SLC22A1 Splice_Site p.X172_splice 0.35 TCGA-EE-A3J5-06 6 160662516 160662516 C T SLC22A2 Silent p.L497L 0.36 TCGA-EE-A3J5-06 6 161012080 161012080 C A LPA Missense_Mutation p.C1228F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 6 161071386 161071386 C T LPA Missense_Mutation p.E65K 0.33 tolerated(0.31) possibly_damaging(0.851) TCGA-EE-A3J5-06 6 161127554 161127554 G A PLG Silent p.E55E 0.33 TCGA-EE-A3J5-06 6 162622179 162622179 G A PARK2 Missense_Mutation p.T173M 0.34 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 6 165715373 165715373 G A C6orf118 Silent p.F146F 0.29 TCGA-EE-A3J5-06 6 165862417 165862417 T - PDE10A Frame_Shift_Del p.N132Ifs*11 0.22 TCGA-EE-A3J5-06 6 167550408 167550408 G A CCR6 Missense_Mutation p.M230I 0.36 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A3J5-06 6 168465650 168465650 G A FRMD1 Silent p.F183F 0.52 TCGA-EE-A3J5-06 6 170072476 170072476 C T WDR27 Missense_Mutation p.G69E 0.41 deleterious(0) probably_damaging(0.924) TCGA-EE-A3J5-06 6 170892152 170892152 C T PDCD2 Silent p.G217G 0.36 TCGA-EE-A3J5-06 6 17543315 17543315 G A CAP2 Missense_Mutation p.V384M 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 6 24601303 24601303 G A KIAA0319 Missense_Mutation p.S10L 0.36 tolerated(0.19) benign(0.008) TCGA-EE-A3J5-06 6 26056012 26056012 C T HIST1H1C 3'UTR 0.34 TCGA-EE-A3J5-06 6 26092868 26092868 G A HFE Intron 0.37 TCGA-EE-A3J5-06 6 26197276 26197276 A T HIST1H3D Missense_Mutation p.F68Y 0.39 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A3J5-06 6 2679681 2679681 G A MYLK4 Intron 0.34 TCGA-EE-A3J5-06 6 27420986 27420986 C T ZNF184 Missense_Mutation p.E118K 0.40 tolerated(0.29) benign(0.033) TCGA-EE-A3J5-06 6 28213227 28213227 A G ZKSCAN4 Silent p.N435N 0.31 TCGA-EE-A3J5-06 6 28327526 28327526 C T ZKSCAN3 Missense_Mutation p.P55S 0.39 tolerated(0.32) probably_damaging(0.977) TCGA-EE-A3J5-06 6 28478621 28478621 C T GPX6 Missense_Mutation p.G50S 0.35 deleterious(0.03) benign(0.22) TCGA-EE-A3J5-06 6 28483498 28483498 G A GPX6 Missense_Mutation p.S8F 0.31 tolerated_low_confidence(0.15) benign(0.003) TCGA-EE-A3J5-06 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.33 tolerated_low_confidence(0.09) benign(0.04) TCGA-EE-A3J5-06 6 28542979 28542979 G A SCAND3 Silent p.F501F 0.31 TCGA-EE-A3J5-06 6 28872105 28872105 G A TRIM27 Silent p.P428P 0.34 TCGA-EE-A3J5-06 6 28962903 28962903 G A ZNF311 Missense_Mutation p.L626F 0.36 deleterious(0.04) possibly_damaging(0.461) TCGA-EE-A3J5-06 6 29012512 29012512 C T OR2W1 Missense_Mutation p.M147I 0.42 tolerated(0.42) benign(0.003) TCGA-EE-A3J5-06 6 29141779 29141779 C T OR2J2 Missense_Mutation p.R123C 0.31 deleterious(0.01) benign(0.336) TCGA-EE-A3J5-06 6 29231741 29231741 C T XXbac-BPG308J9.3 RNA 0.37 TCGA-EE-A3J5-06 6 29572389 29572389 T C GABBR1 Missense_Mutation p.E865G 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J5-06 6 29640421 29640421 G A ZFP57 Silent p.V489V 0.32 TCGA-EE-A3J5-06 6 29641336 29641336 G A ZFP57 Silent p.F184F 0.37 TCGA-EE-A3J5-06 6 30128563 30128563 C T TRIM10 Missense_Mutation p.E25K 0.34 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A3J5-06 6 30136175 30136175 G A TRIM15 Silent p.R192R 0.31 TCGA-EE-A3J5-06 6 30681796 30681796 G A MDC1 Silent p.L101L 0.33 TCGA-EE-A3J5-06 6 30899508 30899508 G A SFTA2 Silent p.S42S 0.36 TCGA-EE-A3J5-06 6 31084978 31084978 G A CDSN Silent p.S138S 0.39 TCGA-EE-A3J5-06 6 31473608 31473608 C T MICB Silent p.D95D 0.35 TCGA-EE-A3J5-06 6 31599107 31599107 C T PRRC2A Missense_Mutation p.P886L 0.39 possibly_damaging(0.713) TCGA-EE-A3J5-06 6 31640101 31640101 C T CSNK2B-LY6G5B-1181 3'UTR 0.27 TCGA-EE-A3J5-06 6 31911996 31911996 G A CFB Missense_Mutation p.G479E 0.27 deleterious(0.05) benign(0.027) TCGA-EE-A3J5-06 6 31912779 31912779 C T C2 Silent p.F684F 0.42 TCGA-EE-A3J5-06 6 32023795 32023795 G A TNXB Missense_Mutation p.T2767I 0.29 possibly_damaging(0.487) TCGA-EE-A3J5-06 6 32089068 32089068 G A ATF6B Missense_Mutation p.S179F 0.35 deleterious(0) probably_damaging(0.928) TCGA-EE-A3J5-06 6 32122887 32122887 A G PPT2 Silent p.Q94Q 0.24 TCGA-EE-A3J5-06 6 32548563 32548563 G A HLA-DRB1 Silent p.F241F 0.13 TCGA-EE-A3J5-06 6 32713049 32713049 G A HLA-DQA2 Missense_Mutation p.E66K 0.35 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A3J5-06 6 32942256 32942256 A T BRD2 Missense_Mutation p.N16I 0.31 tolerated_low_confidence(0.41) benign(0.193) TCGA-EE-A3J5-06 6 35053670 35053670 C T ANKS1A Missense_Mutation p.S1087F 0.46 deleterious(0) possibly_damaging(0.678) TCGA-EE-A3J5-06 6 35108537 35108537 C T TCP11 Silent p.E50E 0.36 TCGA-EE-A3J5-06 6 35210859 35210859 G A SCUBE3 Silent p.K585K 0.31 TCGA-EE-A3J5-06 6 35210863 35210863 C G SCUBE3 Missense_Mutation p.L587V 0.31 deleterious(0.01) possibly_damaging(0.744) TCGA-EE-A3J5-06 6 35987468 35987468 C T SLC26A8 Missense_Mutation p.R6K 0.30 tolerated(0.21) benign(0.038) TCGA-EE-A3J5-06 6 36269779 36269779 G A PNPLA1 Missense_Mutation p.G306E 0.32 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 6 38831715 38831715 C T DNAH8 Missense_Mutation p.S1909L 0.35 probably_damaging(1) TCGA-EE-A3J5-06 6 38919173 38919173 G C DNAH8 Missense_Mutation p.V3893L 0.32 possibly_damaging(0.812) TCGA-EE-A3J5-06 6 4116049 4116049 G A ECI2 3'UTR 0.47 TCGA-EE-A3J5-06 6 41254435 41254435 G A TREM1 5'UTR 0.60 TCGA-EE-A3J5-06 6 42615888 42615888 C T UBR2 Silent p.I814I 0.33 TCGA-EE-A3J5-06 6 42934517 42934517 T C PEX6 Intron 0.40 TCGA-EE-A3J5-06 6 43163840 43163840 G A CUL9 Missense_Mutation p.E808K 0.28 tolerated(0.1) benign(0.019) TCGA-EE-A3J5-06 6 43226872 43226872 C T TTBK1 Silent p.P371P 0.21 TCGA-EE-A3J5-06 6 43251392 43251392 G A TTBK1 Missense_Mutation p.E972K 0.33 benign(0.036) TCGA-EE-A3J5-06 6 43411668 43411668 C T ABCC10 Intron 0.33 TCGA-EE-A3J5-06 6 44253737 44253737 G A TCTE1 Silent p.S270S 0.33 TCGA-EE-A3J5-06 6 46108835 46108835 G A ENPP4 Missense_Mutation p.M291I 0.34 deleterious(0.02) benign(0.007) TCGA-EE-A3J5-06 6 46806915 46806915 C T MEP1A 3'UTR 0.57 TCGA-EE-A3J5-06 6 46826630 46826630 G A GPR116 Missense_Mutation p.P1004S 0.32 tolerated(0.23) benign(0.02) TCGA-EE-A3J5-06 6 46832788 46832788 G A GPR116 Silent p.L661L 0.39 TCGA-EE-A3J5-06 6 47681690 47681690 G T GPR115 Nonsense_Mutation p.E237* 0.36 TCGA-EE-A3J5-06 6 49456141 49456141 T C CENPQ Missense_Mutation p.I185T 0.24 tolerated(0.1) possibly_damaging(0.876) TCGA-EE-A3J5-06 6 53160487 53160487 A T ELOVL5 Missense_Mutation p.F4Y 0.41 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3J5-06 6 54804730 54804730 A T FAM83B Missense_Mutation p.N321Y 0.33 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J5-06 6 54805003 54805003 C T FAM83B Missense_Mutation p.P412S 0.25 tolerated(0.56) benign(0.055) TCGA-EE-A3J5-06 6 56324981 56324981 C T DST Silent p.E5067E 0.43 TCGA-EE-A3J5-06 6 56473749 56473749 G A DST Intron 0.39 TCGA-EE-A3J5-06 6 56483822 56483822 C T DST Intron 0.32 TCGA-EE-A3J5-06 6 62611179 62611179 C T KHDRBS2 Missense_Mutation p.G194E 0.36 deleterious(0.01) possibly_damaging(0.541) TCGA-EE-A3J5-06 6 63990302 63990302 C T LGSN Missense_Mutation p.G385E 0.33 tolerated(0.05) possibly_damaging(0.86) TCGA-EE-A3J5-06 6 69653886 69653886 G A BAI3 Missense_Mutation p.V399I 0.22 deleterious(0.02) benign(0.219) TCGA-EE-A3J5-06 6 69703688 69703688 G A BAI3 Missense_Mutation p.R588Q 0.34 deleterious(0) possibly_damaging(0.752) TCGA-EE-A3J5-06 6 70991093 70991093 G C COL9A1 Missense_Mutation p.D292E 0.24 unknown(0) TCGA-EE-A3J5-06 6 71004056 71004056 C T COL9A1 Silent p.S170S 0.35 TCGA-EE-A3J5-06 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 6 73951317 73951317 G A KHDC1 Missense_Mutation p.P217S 0.30 tolerated_low_confidence(0.16) probably_damaging(0.932) TCGA-EE-A3J5-06 6 74000629 74000629 G A KHDC1 Intron 0.23 TCGA-EE-A3J5-06 6 74304817 74304817 G A SLC17A5 Missense_Mutation p.H491Y 0.29 tolerated(0.14) benign(0.003) TCGA-EE-A3J5-06 6 76369081 76369081 T A SENP6 Silent p.P218P 0.28 TCGA-EE-A3J5-06 6 8064536 8064536 G A BLOC1S5 Missense_Mutation p.S25F 0.39 tolerated(0.11) benign(0.077) TCGA-EE-A3J5-06 6 84234148 84234148 G A PRSS35 Missense_Mutation p.E330K 0.28 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 6 84311112 84311112 G A SNAP91 Missense_Mutation p.S401L 0.19 tolerated(0.3) unknown(0) TCGA-EE-A3J5-06 6 87966182 87966182 G C ZNF292 Missense_Mutation p.Q945H 0.43 tolerated_low_confidence(0.24) benign(0.003) TCGA-EE-A3J5-06 6 89559543 89559543 C T RNGTT Silent p.E345E 0.44 TCGA-EE-A3J5-06 6 89790798 89790798 G A PNRC1 Missense_Mutation p.G62E 0.21 deleterious_low_confidence(0.02) benign(0.09) TCGA-EE-A3J5-06 6 89808244 89808244 T C SRSF12 3'UTR 0.39 TCGA-EE-A3J5-06 6 91226367 91226367 T C MAP3K7 Silent p.E558E 0.30 TCGA-EE-A3J5-06 6 94066598 94066598 T A EPHA7 Silent p.G387G 0.40 TCGA-EE-A3J5-06 6 97058526 97058526 G A FHL5 Missense_Mutation p.D195N 0.31 tolerated(0.27) benign(0) TCGA-EE-A3J5-06 6 97424050 97424050 C T KLHL32 Silent p.F67F 0.31 TCGA-EE-A3J5-06 7 100240826 100240826 C T ACTL6B 3'UTR 0.19 TCGA-EE-A3J5-06 7 100405193 100405193 C T EPHB4 Missense_Mutation p.G710R 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3J5-06 7 100410732 100410732 C T EPHB4 Missense_Mutation p.E619K 0.26 tolerated(0.77) probably_damaging(0.998) TCGA-EE-A3J5-06 7 100491034 100491034 C T ACHE Missense_Mutation p.E274K 0.34 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 7 100606878 100606878 C T MUC3A Intron 0.60 TCGA-EE-A3J5-06 7 100681713 100681713 C T MUC17 Missense_Mutation p.P2339L 0.25 unknown(0) TCGA-EE-A3J5-06 7 100685951 100685951 A G MUC17 Missense_Mutation p.S3752G 0.22 benign(0.001) TCGA-EE-A3J5-06 7 100855890 100855890 G A PLOD3 Missense_Mutation p.P309L 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3J5-06 7 100855891 100855891 G A PLOD3 Missense_Mutation p.P309S 0.24 deleterious(0) probably_damaging(0.932) TCGA-EE-A3J5-06 7 101671377 101671377 G A CUX1 Splice_Site p.X59_splice 0.30 TCGA-EE-A3J5-06 7 101740678 101740678 C T CUX1 Silent p.L112L 0.28 TCGA-EE-A3J5-06 7 101842130 101842130 G A CUX1 Missense_Mutation p.R659Q 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3J5-06 7 101892268 101892268 C T CUX1 Silent p.I1499I 0.34 TCGA-EE-A3J5-06 7 1024696 1024696 G A CYP2W1 Missense_Mutation p.E150K 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 102760137 102760137 C T NAPEPLD Nonsense_Mutation p.W276* 0.19 TCGA-EE-A3J5-06 7 102836061 102836061 G A DPY19L2P2 Intron 0.60 TCGA-EE-A3J5-06 7 102988087 102988087 G A PSMC2 5'UTR 0.51 TCGA-EE-A3J5-06 7 103123409 103123409 C T RELN Silent p.R3397R 0.43 TCGA-EE-A3J5-06 7 103155810 103155810 G A RELN Silent p.G2647G 0.15 TCGA-EE-A3J5-06 7 103234330 103234330 C T RELN Splice_Site p.X1238_splice 0.21 TCGA-EE-A3J5-06 7 106710743 106710743 T C PRKAR2B Missense_Mutation p.F109L 0.57 tolerated(0.08) benign(0.003) TCGA-EE-A3J5-06 7 107706266 107706266 G A LAMB4 Missense_Mutation p.S926F 0.53 deleterious(0.03) probably_damaging(1) TCGA-EE-A3J5-06 7 11076171 11076171 C T PHF14 Missense_Mutation p.R577C 0.31 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J5-06 7 110764291 110764291 C T LRRN3 Missense_Mutation p.P488L 0.27 tolerated(0.32) benign(0.002) TCGA-EE-A3J5-06 7 111368395 111368395 C T DOCK4 Missense_Mutation p.G1946R 0.35 deleterious_low_confidence(0.04) benign(0.001) TCGA-EE-A3J5-06 7 113558485 113558485 G A PPP1R3A Silent p.S189S 0.28 TCGA-EE-A3J5-06 7 116810933 116810933 C T ST7 Silent p.P327P 0.49 TCGA-EE-A3J5-06 7 117175447 117175447 G A CFTR Missense_Mutation p.R242K 0.26 tolerated(1) benign(0.035) TCGA-EE-A3J5-06 7 120385852 120385852 G A KCND2 Missense_Mutation p.E496K 0.28 tolerated_low_confidence(0.08) benign(0.322) TCGA-EE-A3J5-06 7 121624121 121624121 C T PTPRZ1 Missense_Mutation p.S293F 0.48 tolerated(0.29) probably_damaging(1) TCGA-EE-A3J5-06 7 121652372 121652372 C T PTPRZ1 Missense_Mutation p.S1091F 0.28 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A3J5-06 7 123508577 123508577 G A HYAL4 Missense_Mutation p.G84R 0.20 deleterious(0) benign(0.358) TCGA-EE-A3J5-06 7 123593588 123593588 G A SPAM1 5'UTR 0.42 TCGA-EE-A3J5-06 7 123593843 123593843 C T SPAM1 Silent p.F73F 0.18 TCGA-EE-A3J5-06 7 124386994 124386994 C A GPR37 Missense_Mutation p.C476F 0.30 tolerated(0.06) possibly_damaging(0.866) TCGA-EE-A3J5-06 7 124404253 124404253 C T GPR37 Missense_Mutation p.G260R 0.27 tolerated(0.07) probably_damaging(1) TCGA-EE-A3J5-06 7 124503423 124503423 C A POT1 Missense_Mutation p.G176V 0.41 deleterious(0.01) benign(0.342) TCGA-EE-A3J5-06 7 126173127 126173127 G C GRM8 Missense_Mutation p.T770R 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 126173209 126173209 C T GRM8 Missense_Mutation p.D743N 0.19 tolerated(0.45) benign(0.34) TCGA-EE-A3J5-06 7 126544086 126544086 G A GRM8 Nonsense_Mutation p.Q320* 0.28 TCGA-EE-A3J5-06 7 127724845 127724845 C T SND1 Missense_Mutation p.S727F 0.20 deleterious(0) probably_damaging(0.962) TCGA-EE-A3J5-06 7 128357012 128357012 G A FAM71F1 Nonsense_Mutation p.W132* 0.28 TCGA-EE-A3J5-06 7 128493622 128493622 C T FLNC Missense_Mutation p.T2103I 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 128850319 128850319 A G SMO Missense_Mutation p.T528A 0.44 tolerated(0.5) benign(0.004) TCGA-EE-A3J5-06 7 129410252 129410252 G A MIR182 RNA 0.22 TCGA-EE-A3J5-06 7 131195982 131195982 T C PODXL Missense_Mutation p.N104S 0.24 tolerated_low_confidence(0.3) benign(0.011) TCGA-EE-A3J5-06 7 131859576 131859576 G A PLXNA4 Silent p.F1326F 0.22 TCGA-EE-A3J5-06 7 131866180 131866180 C T PLXNA4 Missense_Mutation p.G1151E 0.23 deleterious(0.03) probably_damaging(1) TCGA-EE-A3J5-06 7 134250268 134250268 G A AKR1B15 Intron 0.46 TCGA-EE-A3J5-06 7 137773514 137773514 G A AKR1D1 Silent p.K87K 0.56 TCGA-EE-A3J5-06 7 137773515 137773515 G A AKR1D1 Splice_Site p.X87_splice 0.56 TCGA-EE-A3J5-06 7 138522824 138522824 G A KIAA1549 Missense_Mutation p.P1894S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 7 138601622 138601622 G A KIAA1549 Missense_Mutation p.P917L 0.33 deleterious(0.03) benign(0.113) TCGA-EE-A3J5-06 7 138603675 138603675 G A KIAA1549 Missense_Mutation p.R233W 0.17 deleterious(0.03) benign(0.001) TCGA-EE-A3J5-06 7 138761036 138761036 G A ZC3HAV1 Missense_Mutation p.H565Y 0.25 tolerated(1) benign(0) TCGA-EE-A3J5-06 7 138957149 138957149 G A UBN2 Missense_Mutation p.E560K 0.47 deleterious(0.05) probably_damaging(0.977) TCGA-EE-A3J5-06 7 141430123 141430123 G A WEE2 3'UTR 0.51 TCGA-EE-A3J5-06 7 141799435 141799435 G A MGAM Missense_Mutation p.G1695E 0.23 tolerated(0.06) possibly_damaging(0.456) TCGA-EE-A3J5-06 7 141896609 141896609 G A RP11-1220K2.2 Missense_Mutation p.G1542E 0.46 possibly_damaging(0.613) TCGA-EE-A3J5-06 7 141955414 141955414 G A PRSS58 Silent p.P40P 0.23 TCGA-EE-A3J5-06 7 142008626 142008626 G A TRBV3-1 Silent p.Q33Q 0.13 TCGA-EE-A3J5-06 7 142099900 142099900 G A TRBV7-8 Silent p.F13F 0.24 TCGA-EE-A3J5-06 7 142120030 142120030 G A TRBV7-7 Missense_Mutation p.S46L 0.58 deleterious(0.04) probably_damaging(0.93) TCGA-EE-A3J5-06 7 142180586 142180586 C T TRBV6-5 Silent p.E91E 0.37 TCGA-EE-A3J5-06 7 142180726 142180726 C T TRBV6-5 Missense_Mutation p.D45N 0.16 tolerated(0.48) possibly_damaging(0.651) TCGA-EE-A3J5-06 7 142180769 142180769 C T TRBV6-5 Silent p.Q30Q 0.04 TCGA-EE-A3J5-06 7 142334613 142334613 C T TRBV20-1 Missense_Mutation p.S12F 0.20 tolerated(0.37) unknown(0) TCGA-EE-A3J5-06 7 142448725 142448725 C T TRBV29-1 Missense_Mutation p.L107F 0.48 tolerated(1) benign(0.004) TCGA-EE-A3J5-06 7 142480031 142480031 G A PRSS3P2 RNA 0.16 TCGA-EE-A3J5-06 7 142510502 142510502 G A TRBV30 Missense_Mutation p.P35L 0.32 tolerated(0.3) benign(0.028) TCGA-EE-A3J5-06 7 142649704 142649704 C T KEL Missense_Mutation p.M365I 0.56 deleterious(0.02) possibly_damaging(0.58) TCGA-EE-A3J5-06 7 143657298 143657298 C T OR2F1 Missense_Mutation p.P79S 0.25 deleterious(0.01) possibly_damaging(0.458) TCGA-EE-A3J5-06 7 143657580 143657580 T A OR2F1 Missense_Mutation p.F173I 0.54 tolerated(0.45) benign(0.002) TCGA-EE-A3J5-06 7 143747577 143747577 G A OR2A5 Missense_Mutation p.G28E 0.22 deleterious(0.05) benign(0.019) TCGA-EE-A3J5-06 7 143747578 143747578 G A OR2A5 Silent p.G28G 0.22 TCGA-EE-A3J5-06 7 144150751 144150751 C T TPK1 Missense_Mutation p.D207N 0.24 tolerated(0.4) benign(0.002) TCGA-EE-A3J5-06 7 146471374 146471374 G A CNTNAP2 Missense_Mutation p.E37K 0.20 tolerated(0.15) benign(0.001) TCGA-EE-A3J5-06 7 147926759 147926759 A G CNTNAP2 Missense_Mutation p.N1090S 0.43 tolerated(0.23) benign(0.005) TCGA-EE-A3J5-06 7 149515762 149515762 C T SSPO RNA 0.42 TCGA-EE-A3J5-06 7 149519172 149519172 G A SSPO RNA 0.18 TCGA-EE-A3J5-06 7 150069619 150069619 C T REPIN1 Missense_Mutation p.P487L 0.52 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J5-06 7 150174477 150174477 G A GIMAP8 Missense_Mutation p.R536Q 0.48 tolerated(0.11) possibly_damaging(0.672) TCGA-EE-A3J5-06 7 150269316 150269317 GG T GIMAP4 Frame_Shift_Del p.R53Lfs*31 0.26 TCGA-EE-A3J5-06 7 150269346 150269346 A C GIMAP4 Missense_Mutation p.K63T 0.26 tolerated(0.09) possibly_damaging(0.491) TCGA-EE-A3J5-06 7 150553945 150553945 C T AOC1 Silent p.S129S 0.50 TCGA-EE-A3J5-06 7 150718296 150718296 C T ATG9B Silent p.R314R 0.26 TCGA-EE-A3J5-06 7 150720281 150720281 G A ATG9B Silent p.F224F 0.50 TCGA-EE-A3J5-06 7 150733220 150733220 C T ABCB8 Silent p.I358I 0.23 TCGA-EE-A3J5-06 7 151818043 151818043 G A GALNT11 Nonsense_Mutation p.W562* 0.21 TCGA-EE-A3J5-06 7 151884415 151884415 T C KMT2C Missense_Mutation p.E1647G 0.26 benign(0.053) TCGA-EE-A3J5-06 7 151962193 151962193 C T KMT2C Missense_Mutation p.D372N 0.05 probably_damaging(0.928) TCGA-EE-A3J5-06 7 152480306 152480306 C T ACTR3B Missense_Mutation p.P27S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 155295744 155295744 G A CNPY1 3'UTR 0.23 TCGA-EE-A3J5-06 7 156476656 156476656 G A LMBR1 3'UTR 0.14 TCGA-EE-A3J5-06 7 157931188 157931188 G A PTPRN2 Silent p.L310L 0.62 TCGA-EE-A3J5-06 7 20201469 20201469 C T MACC1 Missense_Mutation p.R6K 0.28 tolerated_low_confidence(0.49) benign(0.002) TCGA-EE-A3J5-06 7 20762824 20762824 A G ABCB5 Silent p.E869E 0.23 TCGA-EE-A3J5-06 7 21742362 21742362 C T DNAH11 Missense_Mutation p.S2079F 0.35 probably_damaging(0.997) TCGA-EE-A3J5-06 7 21908570 21908570 G A DNAH11 Silent p.L3983L 0.27 TCGA-EE-A3J5-06 7 21932281 21932281 A T DNAH11 Missense_Mutation p.E4256V 0.38 possibly_damaging(0.476) TCGA-EE-A3J5-06 7 23401339 23401339 G A IGF2BP3 Nonsense_Mutation p.Q103* 0.33 TCGA-EE-A3J5-06 7 2583265 2583265 G A BRAT1 Silent p.P254P 0.22 TCGA-EE-A3J5-06 7 2583266 2583266 G A BRAT1 Missense_Mutation p.P254L 0.21 tolerated(0.15) benign(0.086) TCGA-EE-A3J5-06 7 27147429 27147429 G A HOXA3 3'UTR 0.36 TCGA-EE-A3J5-06 7 27185201 27185201 A T HOXA6 3'UTR 0.36 TCGA-EE-A3J5-06 7 27185202 27185202 A G HOXA6 3'UTR 0.37 TCGA-EE-A3J5-06 7 31917630 31917630 T C PDE1C Missense_Mutation p.N209D 0.35 deleterious(0.01) possibly_damaging(0.776) TCGA-EE-A3J5-06 7 34192875 34192875 C T BMPER Missense_Mutation p.P683L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 7 34851469 34851469 C T NPSR1 Nonsense_Mutation p.Q158* 0.39 TCGA-EE-A3J5-06 7 36726373 36726373 C T AOAH Missense_Mutation p.E52K 0.31 deleterious(0.03) benign(0.059) TCGA-EE-A3J5-06 7 37889885 37889885 G T NME8 Missense_Mutation p.R6L 0.27 deleterious(0) probably_damaging(0.919) TCGA-EE-A3J5-06 7 38725369 38725369 C T FAM183B Silent p.T79T 0.38 TCGA-EE-A3J5-06 7 38829439 38829439 C T VPS41 Missense_Mutation p.S249N 0.35 tolerated(0.5) benign(0.03) TCGA-EE-A3J5-06 7 38857430 38857430 G A VPS41 Missense_Mutation p.T146I 0.35 tolerated(0.18) possibly_damaging(0.764) TCGA-EE-A3J5-06 7 39046440 39046440 G A POU6F2 5'UTR 0.33 TCGA-EE-A3J5-06 7 43508545 43508545 C T HECW1 Silent p.S980S 0.23 TCGA-EE-A3J5-06 7 44573335 44573335 C T NPC1L1 Intron 0.26 TCGA-EE-A3J5-06 7 44611980 44611980 A G DDX56 Missense_Mutation p.V204A 0.25 deleterious(0) possibly_damaging(0.788) TCGA-EE-A3J5-06 7 45222933 45222933 C T RAMP3 Silent p.I123I 0.32 TCGA-EE-A3J5-06 7 48026965 48026965 G A SUN3 Nonsense_Mutation p.R346* 0.33 TCGA-EE-A3J5-06 7 53103871 53103871 C T POM121L12 Silent p.L169L 0.44 TCGA-EE-A3J5-06 7 54617635 54617635 G A VSTM2A Missense_Mutation p.E136K 0.37 tolerated(0.11) benign(0.43) TCGA-EE-A3J5-06 7 54826917 54826917 G A SEC61G 5'UTR 0.16 TCGA-EE-A3J5-06 7 55223557 55223557 C T EGFR Silent p.V308V 0.31 TCGA-EE-A3J5-06 7 5529770 5529770 G A FBXL18 Intron 0.35 TCGA-EE-A3J5-06 7 5568815 5568815 C T ACTB Missense_Mutation p.A114T 0.34 tolerated_low_confidence(0.06) benign(0.002) TCGA-EE-A3J5-06 7 56007557 56007557 C T ZNF713 Missense_Mutation p.P384L 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3J5-06 7 57194390 57194390 G A ZNF479 Silent p.F25F 0.20 TCGA-EE-A3J5-06 7 57528639 57528639 C T ZNF716 Nonsense_Mutation p.Q158* 0.46 TCGA-EE-A3J5-06 7 57529181 57529181 C T ZNF716 Silent p.T338T 0.14 TCGA-EE-A3J5-06 7 62752594 62752594 G A ZNF733P RNA 0.21 TCGA-EE-A3J5-06 7 64167982 64167982 C T ZNF107 Missense_Mutation p.H434Y 0.28 deleterious(0.02) probably_damaging(0.948) TCGA-EE-A3J5-06 7 6628278 6628278 T C ZDHHC4 Missense_Mutation p.F258L 0.31 tolerated(0.13) benign(0.372) TCGA-EE-A3J5-06 7 71177029 71177029 G A WBSCR17 Silent p.T565T 0.52 TCGA-EE-A3J5-06 7 72361631 72361631 C T POM121 5'UTR 0.16 TCGA-EE-A3J5-06 7 72745695 72745695 G A FKBP6 Silent p.L168L 0.28 TCGA-EE-A3J5-06 7 72892705 72892705 A G BAZ1B Silent p.P362P 0.33 TCGA-EE-A3J5-06 7 73455548 73455548 C T ELN Missense_Mutation p.P67S 0.25 unknown(0) TCGA-EE-A3J5-06 7 73639016 73639016 G A LAT2 Missense_Mutation p.E226K 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A3J5-06 7 73646450 73646450 G A RFC2 Missense_Mutation p.P351S 0.48 deleterious_low_confidence(0.01) benign(0.271) TCGA-EE-A3J5-06 7 75517490 75517490 G A RHBDD2 Silent p.V306V 0.22 TCGA-EE-A3J5-06 7 80276004 80276004 G A CD36 5'UTR 0.57 TCGA-EE-A3J5-06 7 82544559 82544559 T A PCLO Missense_Mutation p.N4248I 0.30 unknown(0) TCGA-EE-A3J5-06 7 82580234 82580234 C T PCLO Missense_Mutation p.E3224K 0.23 unknown(0) TCGA-EE-A3J5-06 7 82580518 82580518 G A PCLO Missense_Mutation p.S3129L 0.25 unknown(0) TCGA-EE-A3J5-06 7 8258065 8258065 G A ICA1 Missense_Mutation p.S150L 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J5-06 7 82581227 82581227 A T PCLO Missense_Mutation p.D3014E 0.30 unknown(0) TCGA-EE-A3J5-06 7 82763871 82763871 C T PCLO Missense_Mutation p.E999K 0.19 unknown(0) TCGA-EE-A3J5-06 7 82764246 82764246 C T PCLO Missense_Mutation p.G874R 0.49 unknown(0) TCGA-EE-A3J5-06 7 83095835 83095835 G A SEMA3E Missense_Mutation p.P140L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 83095836 83095836 G A SEMA3E Missense_Mutation p.P140S 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 84697540 84697540 C T SEMA3D Missense_Mutation p.D186N 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 7 86416132 86416132 C T GRM3 Missense_Mutation p.P342S 0.12 tolerated(0.22) probably_damaging(0.997) TCGA-EE-A3J5-06 7 86416133 86416133 C T GRM3 Missense_Mutation p.P342L 0.12 tolerated(1) possibly_damaging(0.905) TCGA-EE-A3J5-06 7 86509798 86509798 G A KIAA1324L Missense_Mutation p.P1027S 0.25 tolerated_low_confidence(0.12) benign(0.009) TCGA-EE-A3J5-06 7 86827293 86827293 G A TMEM243 Silent p.V66V 0.48 TCGA-EE-A3J5-06 7 87746109 87746109 C T ADAM22 Missense_Mutation p.S196F 0.23 tolerated(0.12) benign(0) TCGA-EE-A3J5-06 7 87759716 87759716 G A ADAM22 Missense_Mutation p.R256Q 0.25 deleterious(0) probably_damaging(0.97) TCGA-EE-A3J5-06 7 89884766 89884766 T C C7orf63 Silent p.R50R 0.48 TCGA-EE-A3J5-06 7 91631209 91631209 G A AKAP9 Missense_Mutation p.G660S 0.52 benign(0.004) TCGA-EE-A3J5-06 7 92761054 92761054 G A SAMD9L Nonsense_Mutation p.R1411* 0.51 TCGA-EE-A3J5-06 7 94897979 94897979 G C PPP1R9A Missense_Mutation p.S928T 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A3J5-06 7 97823814 97823814 C A LMTK2 Missense_Mutation p.P1346H 0.28 deleterious(0.03) benign(0.078) TCGA-EE-A3J5-06 7 98524852 98524852 C T TRRAP Missense_Mutation p.P1013L 0.22 benign(0.008) TCGA-EE-A3J5-06 7 98533273 98533273 C T TRRAP Silent p.L1362L 0.53 TCGA-EE-A3J5-06 7 99699608 99699608 G T AP4M1 Intron 0.25 TCGA-EE-A3J5-06 7 99719914 99719914 G A CNPY4 Missense_Mutation p.E51K 0.26 tolerated(1) benign(0.007) TCGA-EE-A3J5-06 8 100587942 100587942 C T VPS13B Missense_Mutation p.S1694F 0.32 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A3J5-06 8 100789163 100789163 C T VPS13B Missense_Mutation p.H2495Y 0.38 deleterious(0) benign(0.403) TCGA-EE-A3J5-06 8 100990250 100990250 C T RGS22 Silent p.R1138R 0.35 TCGA-EE-A3J5-06 8 102644468 102644468 T C GRHL2 Silent p.L454L 0.39 TCGA-EE-A3J5-06 8 102656453 102656453 G A GRHL2 Missense_Mutation p.V538M 0.50 deleterious(0) probably_damaging(0.986) TCGA-EE-A3J5-06 8 103293623 103293623 C T UBR5 Missense_Mutation p.V1941I 0.41 tolerated(0.26) possibly_damaging(0.891) TCGA-EE-A3J5-06 8 103323718 103323718 G A UBR5 Missense_Mutation p.P809S 0.29 tolerated(0.17) probably_damaging(0.986) TCGA-EE-A3J5-06 8 10396000 10396000 G A PRSS55 Silent p.G252G 0.25 TCGA-EE-A3J5-06 8 10467864 10467864 C T RP1L1 Silent p.G1248G 0.33 TCGA-EE-A3J5-06 8 10480253 10480253 C T RP1L1 Silent p.R153R 0.41 TCGA-EE-A3J5-06 8 104898085 104898085 G A RIMS2 Missense_Mutation p.G420R 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3J5-06 8 105001602 105001602 G T RIMS2 Missense_Mutation p.M999I 0.29 tolerated_low_confidence(0.3) benign(0.037) TCGA-EE-A3J5-06 8 105509256 105509256 G A LRP12 Silent p.L508L 0.25 TCGA-EE-A3J5-06 8 107705000 107705000 C T OXR1 Silent p.F191F 0.46 TCGA-EE-A3J5-06 8 108276579 108276579 C G ANGPT1 Missense_Mutation p.R402S 0.40 tolerated(0.17) possibly_damaging(0.827) TCGA-EE-A3J5-06 8 108306214 108306214 G A ANGPT1 Missense_Mutation p.R330C 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 8 110476485 110476485 C T PKHD1L1 Missense_Mutation p.P2475L 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 8 110477466 110477466 C T PKHD1L1 Missense_Mutation p.S2802L 0.36 deleterious(0) possibly_damaging(0.452) TCGA-EE-A3J5-06 8 110980599 110980599 G A KCNV1 Silent p.I407I 0.28 TCGA-EE-A3J5-06 8 113293480 113293480 C T CSMD3 Missense_Mutation p.G3144E 0.44 deleterious(0) probably_damaging(0.911) TCGA-EE-A3J5-06 8 113301614 113301614 C T CSMD3 Missense_Mutation p.G3043E 0.39 deleterious(0) possibly_damaging(0.484) TCGA-EE-A3J5-06 8 114186122 114186122 T A CSMD3 Missense_Mutation p.N180Y 0.46 deleterious(0) possibly_damaging(0.722) TCGA-EE-A3J5-06 8 117954903 117954903 C T AARD Missense_Mutation p.S144F 0.35 deleterious(0) probably_damaging(0.919) TCGA-EE-A3J5-06 8 117954904 117954904 C T AARD Silent p.S144S 0.35 TCGA-EE-A3J5-06 8 118147557 118147557 C T SLC30A8 5'Flank 0.29 TCGA-EE-A3J5-06 8 119634115 119634115 C T SAMD12 5'UTR 0.42 TCGA-EE-A3J5-06 8 121301985 121301985 C T COL14A1 Missense_Mutation p.P1406S 0.58 tolerated(0.88) possibly_damaging(0.589) TCGA-EE-A3J5-06 8 121530221 121530221 C T MTBP Missense_Mutation p.P793S 0.45 tolerated(0.36) benign(0.001) TCGA-EE-A3J5-06 8 123965211 123965211 C T ZHX2 Silent p.F487F 0.51 TCGA-EE-A3J5-06 8 124817556 124817556 T G FAM91A1 Missense_Mutation p.F620C 0.15 deleterious(0) possibly_damaging(0.873) TCGA-EE-A3J5-06 8 125072749 125072749 C T FER1L6 Intron 0.32 TCGA-EE-A3J5-06 8 127569212 127569212 C T FAM84B Silent p.Q141Q 0.50 TCGA-EE-A3J5-06 8 130760939 130760939 G A GSDMC Silent p.P445P 0.45 TCGA-EE-A3J5-06 8 130763803 130763803 C T GSDMC Missense_Mutation p.E310K 0.26 tolerated(0.37) benign(0.133) TCGA-EE-A3J5-06 8 131916288 131916288 C T ADCY8 Silent p.G547G 0.25 TCGA-EE-A3J5-06 8 133182650 133182650 T A KCNQ3 Missense_Mutation p.N389I 0.26 deleterious(0) benign(0.319) TCGA-EE-A3J5-06 8 135613971 135613971 G A ZFAT Missense_Mutation p.S664L 0.31 tolerated(0.11) benign(0.001) TCGA-EE-A3J5-06 8 139155319 139155319 C T FAM135B Missense_Mutation p.D1192N 0.26 deleterious(0) probably_damaging(0.988) TCGA-EE-A3J5-06 8 142441072 142441072 G A PTP4A3 Silent p.E150E 0.49 TCGA-EE-A3J5-06 8 143545880 143545880 C T BAI1 Silent p.F107F 0.18 TCGA-EE-A3J5-06 8 143623479 143623479 C T BAI1 Missense_Mutation p.P1295L 0.31 tolerated(0.84) possibly_damaging(0.713) TCGA-EE-A3J5-06 8 143784663 143784663 G A LY6K Silent p.E124E 0.47 TCGA-EE-A3J5-06 8 143823794 143823794 G A SLURP1 Missense_Mutation p.R4C 0.38 tolerated(0.16) benign(0.001) TCGA-EE-A3J5-06 8 144944101 144944101 A G EPPK1 Silent p.T1107T 0.28 TCGA-EE-A3J5-06 8 144946454 144946454 G A EPPK1 Missense_Mutation p.A323V 0.36 probably_damaging(0.999) TCGA-EE-A3J5-06 8 144946492 144946492 G A EPPK1 Silent p.L310L 0.32 TCGA-EE-A3J5-06 8 144996174 144996174 G A PLEC Silent p.H2742H 0.43 TCGA-EE-A3J5-06 8 145065438 145065438 C T GRINA Missense_Mutation p.P16L 0.40 tolerated_low_confidence(0.32) unknown(0) TCGA-EE-A3J5-06 8 145580011 145580011 G A FBXL6 Missense_Mutation p.R392C 0.30 deleterious(0) possibly_damaging(0.725) TCGA-EE-A3J5-06 8 145580114 145580114 G A FBXL6 Silent p.S357S 0.24 TCGA-EE-A3J5-06 8 146156159 146156159 A G ZNF16 Silent p.L672L 0.28 TCGA-EE-A3J5-06 8 1496882 1496882 G A DLGAP2 Missense_Mutation p.R8Q 0.69 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3J5-06 8 15967567 15967567 C T MSR1 3'UTR 0.31 TCGA-EE-A3J5-06 8 17447196 17447196 T C PDGFRL Missense_Mutation p.V92A 0.27 deleterious(0.03) benign(0.013) TCGA-EE-A3J5-06 8 17500139 17500139 G A PDGFRL Silent p.T319T 0.35 TCGA-EE-A3J5-06 8 19362977 19362977 G A CSGALNACT1 Silent p.F123F 0.32 TCGA-EE-A3J5-06 8 20003259 20003259 G A SLC18A1 3'UTR 0.29 TCGA-EE-A3J5-06 8 20072455 20072455 C T ATP6V1B2 Missense_Mutation p.P352S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 8 2044089 2044089 G A MYOM2 Missense_Mutation p.V710I 0.46 tolerated(0.3) benign(0.109) TCGA-EE-A3J5-06 8 21977325 21977325 G A HR Silent p.L975L 0.37 TCGA-EE-A3J5-06 8 21996458 21996458 G A REEP4 Silent p.S178S 0.51 TCGA-EE-A3J5-06 8 22424682 22424682 T G SORBS3 Nonsense_Mutation p.Y433* 0.35 TCGA-EE-A3J5-06 8 22429332 22429332 C T SORBS3 Silent p.T615T 0.24 TCGA-EE-A3J5-06 8 23423648 23423648 C T SLC25A37 Missense_Mutation p.P80S 0.47 deleterious(0.02) probably_damaging(0.968) TCGA-EE-A3J5-06 8 23712087 23712087 C T STC1 5'UTR 0.31 TCGA-EE-A3J5-06 8 24250828 24250828 C T ADAMDEC1 Silent p.I87I 0.22 TCGA-EE-A3J5-06 8 24326289 24326289 G A ADAM7 Missense_Mutation p.D197N 0.22 tolerated(0.22) benign(0) TCGA-EE-A3J5-06 8 24326292 24326292 G A ADAM7 Missense_Mutation p.E198K 0.21 tolerated(0.78) benign(0.025) TCGA-EE-A3J5-06 8 26627876 26627876 C T ADRA1A Nonsense_Mutation p.W397* 0.26 TCGA-EE-A3J5-06 8 27290974 27290974 C T PTK2B Missense_Mutation p.S337F 0.36 deleterious(0) benign(0.411) TCGA-EE-A3J5-06 8 27886810 27886810 C T NUGGC Silent p.R709R 0.33 TCGA-EE-A3J5-06 8 27931966 27931966 G A NUGGC 5'UTR 0.45 TCGA-EE-A3J5-06 8 30209761 30209761 C T TUBBP1 RNA 0.23 TCGA-EE-A3J5-06 8 30999098 30999098 T C WRN Silent p.I1040I 0.19 TCGA-EE-A3J5-06 8 3265652 3265652 T A CSMD1 Missense_Mutation p.I614F 0.44 benign(0.219) TCGA-EE-A3J5-06 8 38700836 38700836 G A TACC1 Silent p.Q717Q 0.26 TCGA-EE-A3J5-06 8 39782806 39782806 G A IDO1 Missense_Mutation p.E258K 0.33 tolerated(1) benign(0.001) TCGA-EE-A3J5-06 8 41164368 41164368 C T SFRP1 Intron 0.30 TCGA-EE-A3J5-06 8 41164369 41164369 C T SFRP1 Intron 0.30 TCGA-EE-A3J5-06 8 41525829 41525829 C T ANK1 Missense_Mutation p.E1825K 0.31 tolerated_low_confidence(0.17) benign(0.002) TCGA-EE-A3J5-06 8 42958731 42958731 C T POMK Missense_Mutation p.P14S 0.33 tolerated_low_confidence(0.12) benign(0.026) TCGA-EE-A3J5-06 8 42977920 42977920 C T POMK Missense_Mutation p.P318L 0.31 deleterious(0.02) possibly_damaging(0.873) TCGA-EE-A3J5-06 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A3J5-06 8 52773764 52773764 A T PCMTD1 5'UTR 0.31 TCGA-EE-A3J5-06 8 53085020 53085020 C T ST18 Missense_Mutation p.G134E 0.31 tolerated(0.07) benign(0.03) TCGA-EE-A3J5-06 8 55372394 55372394 G A SOX17 Missense_Mutation p.E362K 0.30 deleterious(0) probably_damaging(0.973) TCGA-EE-A3J5-06 8 55541881 55541881 A T RP1 Missense_Mutation p.E1813D 0.26 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A3J5-06 8 65528502 65528502 T C CYP7B1 Missense_Mutation p.K199R 0.31 tolerated(0.46) benign(0.075) TCGA-EE-A3J5-06 8 67576730 67576730 G A VCPIP1 Missense_Mutation p.P822S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 8 67958055 67958055 T C COPS5 Silent p.T304T 0.28 TCGA-EE-A3J5-06 8 69017486 69017486 C T PREX2 Intron 0.27 TCGA-EE-A3J5-06 8 70539472 70539472 C T SULF1 Silent p.I626I 0.24 TCGA-EE-A3J5-06 8 73479890 73479890 A T KCNB2 5'UTR 0.63 TCGA-EE-A3J5-06 8 73480250 73480250 G A KCNB2 Missense_Mutation p.G94E 0.42 tolerated(0.08) possibly_damaging(0.823) TCGA-EE-A3J5-06 8 73921227 73921227 G A TERF1 Missense_Mutation p.E36K 0.39 tolerated_low_confidence(0.07) benign(0.032) TCGA-EE-A3J5-06 8 74507457 74507457 T A STAU2 Missense_Mutation p.M369L 0.28 tolerated(0.39) benign(0.039) TCGA-EE-A3J5-06 8 75171635 75171635 C T JPH1 Missense_Mutation p.D415N 0.50 tolerated(0.25) benign(0.005) TCGA-EE-A3J5-06 8 75925135 75925135 C T CRISPLD1 Missense_Mutation p.P130S 0.38 tolerated(0.06) benign(0.371) TCGA-EE-A3J5-06 8 76471062 76471062 A T HNF4G Nonsense_Mutation p.K295* 0.30 TCGA-EE-A3J5-06 8 76472608 76472608 C T HNF4G Missense_Mutation p.H375Y 0.39 tolerated(0.17) benign(0.175) TCGA-EE-A3J5-06 8 76472686 76472686 C T HNF4G Missense_Mutation p.H401Y 0.23 tolerated(0.26) possibly_damaging(0.61) TCGA-EE-A3J5-06 8 77766603 77766603 C T ZFHX4 Silent p.L2482L 0.35 TCGA-EE-A3J5-06 8 77766854 77766854 C T ZFHX4 Missense_Mutation p.S2566F 0.23 benign(0.323) TCGA-EE-A3J5-06 8 82357140 82357140 C T PMP2 Missense_Mutation p.R53Q 0.35 tolerated(0.06) benign(0.015) TCGA-EE-A3J5-06 8 87679272 87679272 G A CNGB3 Nonsense_Mutation p.Q245* 0.35 TCGA-EE-A3J5-06 8 93029589 93029589 G A RUNX1T1 Missense_Mutation p.R42C 0.54 deleterious_low_confidence(0.03) probably_damaging(0.969) TCGA-EE-A3J5-06 8 94746424 94746427 AATG TA RBM12B Frame_Shift_Del p.H738Yfs*10 0.23 TCGA-EE-A3J5-06 8 95523649 95523649 G A KIAA1429 Missense_Mutation p.R1052C 0.27 tolerated(0.14) probably_damaging(0.961) TCGA-EE-A3J5-06 8 95680196 95680196 C T ESRP1 Silent p.A317A 0.44 TCGA-EE-A3J5-06 8 96070178 96070178 G A NDUFAF6 3'UTR 0.38 TCGA-EE-A3J5-06 8 9623825 9623825 C T TNKS Silent p.A1210A 0.38 TCGA-EE-A3J5-06 8 99152404 99152404 C T POP1 Silent p.F487F 0.41 TCGA-EE-A3J5-06 8 99168299 99168299 C T POP1 Silent p.P693P 0.21 TCGA-EE-A3J5-06 9 100389828 100389828 G T TSTD2 Nonsense_Mutation p.S6* 0.62 TCGA-EE-A3J5-06 9 100892148 100892148 C T CORO2A Missense_Mutation p.E299K 0.61 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 9 101585547 101585547 G A GALNT12 Silent p.E127E 0.60 TCGA-EE-A3J5-06 9 107367296 107367296 A T OR13C2 Missense_Mutation p.L205M 0.60 deleterious(0.02) probably_damaging(0.958) TCGA-EE-A3J5-06 9 112168762 112168762 G A PTPN3 Missense_Mutation p.A591V 0.62 tolerated(1) benign(0.047) TCGA-EE-A3J5-06 9 113170542 113170542 G A SVEP1 Silent p.I2446I 0.53 TCGA-EE-A3J5-06 9 115931745 115931745 C T FKBP15 Missense_Mutation p.E1082K 0.61 tolerated_low_confidence(0.08) benign(0.014) TCGA-EE-A3J5-06 9 117692581 117692581 C T TNFSF8 Translation_Start_Site p.M1? 0.68 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EE-A3J5-06 9 117848761 117848761 G C TNC Missense_Mutation p.R417G 0.54 deleterious(0) possibly_damaging(0.805) TCGA-EE-A3J5-06 9 118949993 118949993 C T PAPPA Silent p.L326L 0.56 TCGA-EE-A3J5-06 9 124522694 124522694 C T DAB2IP Silent p.I354I 0.64 TCGA-EE-A3J5-06 9 125315490 125315490 G A OR1N2 Silent p.G14G 0.54 TCGA-EE-A3J5-06 9 125438106 125438106 G A OR1L3 Missense_Mutation p.G233E 0.60 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J5-06 9 12708132 12708132 T C TYRP1 Missense_Mutation p.I466T 0.49 deleterious(0.02) benign(0.017) TCGA-EE-A3J5-06 9 129958878 129958878 C T RALGPS1 Missense_Mutation p.S388F 0.61 deleterious(0.04) benign(0.005) TCGA-EE-A3J5-06 9 130279194 130279194 G A FAM129B Silent p.I305I 0.61 TCGA-EE-A3J5-06 9 130649777 130649777 G A ST6GALNAC6 Silent p.P266P 0.53 TCGA-EE-A3J5-06 9 131337034 131337034 C T SPTAN1 Silent p.A148A 0.66 TCGA-EE-A3J5-06 9 131857787 131857787 C T CRAT Silent p.S590S 0.66 TCGA-EE-A3J5-06 9 133799655 133799655 G A FIBCD1 Silent p.A227A 0.59 TCGA-EE-A3J5-06 9 134467519 134467519 G A RAPGEF1 Missense_Mutation p.S746F 0.64 deleterious(0) possibly_damaging(0.473) TCGA-EE-A3J5-06 9 135102341 135102341 G A NTNG2 Silent p.K321K 0.83 TCGA-EE-A3J5-06 9 136305466 136305466 G A ADAMTS13 Silent p.A596A 0.62 TCGA-EE-A3J5-06 9 137620526 137620526 G A COL5A1 Missense_Mutation p.G266E 0.61 probably_damaging(0.972) TCGA-EE-A3J5-06 9 137676865 137676865 G A COL5A1 Missense_Mutation p.E839K 0.47 unknown(0) TCGA-EE-A3J5-06 9 137676889 137676889 G A COL5A1 Missense_Mutation p.G847S 0.47 unknown(0) TCGA-EE-A3J5-06 9 139262223 139262223 C T CARD9 Missense_Mutation p.D379N 0.65 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 9 139273406 139273406 G A SNAPC4 Missense_Mutation p.P958L 0.50 deleterious(0.03) benign(0.057) TCGA-EE-A3J5-06 9 139298636 139298636 G A SDCCAG3 Missense_Mutation p.S360F 0.48 deleterious(0.02) benign(0.205) TCGA-EE-A3J5-06 9 139369651 139369651 T A SEC16A Missense_Mutation p.Q806L 0.61 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J5-06 9 139748356 139748356 C T MAMDC4 Silent p.F194F 0.45 TCGA-EE-A3J5-06 9 139889928 139889928 C T CLIC3 Missense_Mutation p.E79K 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 9 140059801 140059801 C T GRIN1 Intron 0.54 TCGA-EE-A3J5-06 9 141012425 141012425 G A CACNA1B Silent p.E1935E 0.50 TCGA-EE-A3J5-06 9 14770666 14770666 C T FREM1 Missense_Mutation p.D1666N 0.56 tolerated(0.16) benign(0.009) TCGA-EE-A3J5-06 9 14789050 14789050 C T FREM1 Silent p.L1348L 0.48 TCGA-EE-A3J5-06 9 14824845 14824845 C T FREM1 Missense_Mutation p.R676K 0.54 tolerated(0.55) benign(0.071) TCGA-EE-A3J5-06 9 14851330 14851330 G A FREM1 Silent p.I368I 0.40 TCGA-EE-A3J5-06 9 14868827 14868827 G A FREM1 Missense_Mutation p.A50V 0.22 tolerated(0.3) benign(0.006) TCGA-EE-A3J5-06 9 16870676 16870676 C T BNC2 5'UTR 0.21 TCGA-EE-A3J5-06 9 18892485 18892485 C T ADAMTSL1 Missense_Mutation p.S1581F 0.43 tolerated(0.07) probably_damaging(0.936) TCGA-EE-A3J5-06 9 18941751 18941751 A T FAM154A Missense_Mutation p.L102H 0.20 tolerated(0.55) possibly_damaging(0.863) TCGA-EE-A3J5-06 9 19573399 19573399 G A SLC24A2 Missense_Mutation p.P433S 0.16 tolerated(0.32) benign(0.046) TCGA-EE-A3J5-06 9 19786147 19786147 G A SLC24A2 Nonsense_Mutation p.R240* 0.39 TCGA-EE-A3J5-06 9 20948332 20948345 AAAAGCTGAAGACT - FOCAD Frame_Shift_Del p.K1247Gfs*36 0.27 TCGA-EE-A3J5-06 9 21304717 21304717 T C IFNA5 Missense_Mutation p.N180S 0.41 tolerated(0.28) benign(0.006) TCGA-EE-A3J5-06 9 2186140 2186140 C T SMARCA2 Silent p.A1502A 0.16 TCGA-EE-A3J5-06 9 22823403 22823403 G A RP11-399D6.2 RNA 0.19 TCGA-EE-A3J5-06 9 27109596 27109596 C T TEK Missense_Mutation p.S3F 0.41 tolerated_low_confidence(0.72) unknown(0) TCGA-EE-A3J5-06 9 2729610 2729610 G A KCNV2 Silent p.E507E 0.24 TCGA-EE-A3J5-06 9 32630148 32630148 G A TAF1L Silent p.P1810P 0.20 TCGA-EE-A3J5-06 9 32633223 32633223 C T TAF1L Silent p.R785R 0.22 TCGA-EE-A3J5-06 9 32634247 32634247 C T TAF1L Missense_Mutation p.G444E 0.22 tolerated(1) benign(0.045) TCGA-EE-A3J5-06 9 33799228 33799228 C T PRSS3 3'UTR 0.27 TCGA-EE-A3J5-06 9 34512395 34512395 C T DNAI1 Missense_Mutation p.P488S 0.21 tolerated(0.15) benign(0.014) TCGA-EE-A3J5-06 9 34627714 34627714 A G ARID3C Missense_Mutation p.Y100H 0.40 deleterious(0) probably_damaging(0.965) TCGA-EE-A3J5-06 9 34977228 34977228 C T KIAA1045 Missense_Mutation p.S333F 0.18 deleterious(0) possibly_damaging(0.82) TCGA-EE-A3J5-06 9 35957189 35957189 C T OR2S2 Missense_Mutation p.D303N 0.18 deleterious(0.01) possibly_damaging(0.616) TCGA-EE-A3J5-06 9 36171241 36171241 C T CCIN Missense_Mutation p.P581L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J5-06 9 37541212 37541212 G A FBXO10 Missense_Mutation p.T185M 0.16 tolerated(1) benign(0) TCGA-EE-A3J5-06 9 37541213 37541213 T A FBXO10 Missense_Mutation p.T185S 0.16 deleterious(0.05) benign(0) TCGA-EE-A3J5-06 9 4635350 4635350 G A SPATA6L Intron 0.20 TCGA-EE-A3J5-06 9 6328916 6328916 G A TPD52L3 Silent p.R107R 0.30 TCGA-EE-A3J5-06 9 69112874 69112874 C A RP11-87H9.3 5'Flank 0.36 TCGA-EE-A3J5-06 9 73426098 73426098 A G TRPM3 Intron 0.65 TCGA-EE-A3J5-06 9 78547299 78547299 G A PCSK5 Missense_Mutation p.G66E 0.62 deleterious(0) probably_damaging(0.982) TCGA-EE-A3J5-06 9 78936462 78936462 G A PCSK5 Missense_Mutation p.E1310K 0.67 tolerated(0.56) benign(0.004) TCGA-EE-A3J5-06 9 79320150 79320150 G A PRUNE2 Missense_Mutation p.A2347V 0.66 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3J5-06 9 79320584 79320584 A G PRUNE2 Silent p.G2202G 0.47 TCGA-EE-A3J5-06 9 79321508 79321508 G A PRUNE2 Silent p.P1894P 0.69 TCGA-EE-A3J5-06 9 79321835 79321835 C T PRUNE2 Silent p.E1785E 0.48 TCGA-EE-A3J5-06 9 79933406 79933406 G A VPS13A Missense_Mutation p.G1738S 0.70 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 9 8485939 8485939 C T PTPRD Missense_Mutation p.D960N 0.27 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A3J5-06 9 94486956 94486956 G A ROR2 Missense_Mutation p.S607F 0.66 deleterious(0) probably_damaging(0.983) TCGA-EE-A3J5-06 9 95738935 95738935 G A FGD3 Missense_Mutation p.E133K 0.57 tolerated(0.13) benign(0.309) TCGA-EE-A3J5-06 9 98643395 98643395 A G ERCC6L2 Silent p.R108R 0.58 TCGA-EE-A3J5-06 X 100087728 100087728 A T CSTF2 Missense_Mutation p.Y346F 0.83 tolerated(0.09) benign(0.388) TCGA-EE-A3J5-06 X 101395790 101395790 G A TCEAL6 Missense_Mutation p.P172S 0.86 tolerated(0.08) benign(0.031) TCGA-EE-A3J5-06 X 102193059 102193059 C T RAB40AL Silent p.T271T 0.67 TCGA-EE-A3J5-06 X 102864506 102864506 C T TCEAL3 Missense_Mutation p.P172S 0.20 tolerated(0.11) benign(0.055) TCGA-EE-A3J5-06 X 102979084 102979084 C T GLRA4 Missense_Mutation p.G139E 0.73 tolerated(0.07) probably_damaging(0.929) TCGA-EE-A3J5-06 X 10427798 10427798 C T MID1 Silent p.Q445Q 0.79 TCGA-EE-A3J5-06 X 105137922 105137922 G A NRK Missense_Mutation p.R159Q 0.84 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A3J5-06 X 105280808 105280808 G A SERPINA7 Missense_Mutation p.S81F 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 X 105937258 105937258 T G RNF128 Missense_Mutation p.F9C 0.69 tolerated(0.2) benign(0) TCGA-EE-A3J5-06 X 106844420 106844420 G A FRMPD3 Missense_Mutation p.E1084K 0.80 tolerated_low_confidence(0.06) benign(0.009) TCGA-EE-A3J5-06 X 108684589 108684589 C T GUCY2F Silent p.A564A 0.76 TCGA-EE-A3J5-06 X 110653522 110653522 A T DCX Nonsense_Mutation p.C116* 0.64 TCGA-EE-A3J5-06 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.71 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J5-06 X 112021840 112021840 G A AMOT Silent p.I1070I 0.73 TCGA-EE-A3J5-06 X 113961378 113961378 C T HTR2C Silent p.F11F 0.83 TCGA-EE-A3J5-06 X 114141186 114141186 G A HTR2C Silent p.R195R 0.75 TCGA-EE-A3J5-06 X 115304602 115304602 G A AGTR2 Missense_Mutation p.E357K 0.70 tolerated(0.73) benign(0.032) TCGA-EE-A3J5-06 X 115593014 115593014 C T CT83 Missense_Mutation p.R79Q 0.69 tolerated(0.12) benign(0.034) TCGA-EE-A3J5-06 X 118752672 118752672 G A SEPT6 3'UTR 0.67 TCGA-EE-A3J5-06 X 119388866 119388866 T C ZBTB33 Silent p.P532P 0.80 TCGA-EE-A3J5-06 X 120183214 120183214 A T GLUD2 Nonstop_Mutation p.*559Lext*5 0.74 TCGA-EE-A3J5-06 X 122459974 122459974 C T GRIA3 Silent p.F202F 0.73 TCGA-EE-A3J5-06 X 128926357 128926357 C T SASH3 Missense_Mutation p.P166S 0.74 tolerated(0.63) benign(0.005) TCGA-EE-A3J5-06 X 128926358 128926358 C T SASH3 Missense_Mutation p.P166L 0.73 tolerated(0.28) benign(0.018) TCGA-EE-A3J5-06 X 129270669 129270669 G A AIFM1 Silent p.S371S 0.75 TCGA-EE-A3J5-06 X 129270670 129270670 G A AIFM1 Missense_Mutation p.S371F 0.74 deleterious(0) possibly_damaging(0.849) TCGA-EE-A3J5-06 X 130409647 130409647 C T IGSF1 Missense_Mutation p.G1002R 0.69 deleterious(0.04) probably_damaging(0.927) TCGA-EE-A3J5-06 X 131202291 131202291 G A MST4 Missense_Mutation p.E127K 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 X 131212013 131212013 G A FRMD7 Missense_Mutation p.R678C 0.80 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J5-06 X 137714939 137714939 G A FGF13 3'Flank 0.78 TCGA-EE-A3J5-06 X 138619174 138619174 C T F9 Missense_Mutation p.L32F 0.55 deleterious(0) possibly_damaging(0.894) TCGA-EE-A3J5-06 X 138630545 138630545 G A F9 Missense_Mutation p.G139S 0.74 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 X 140335825 140335825 T A SPANXC Missense_Mutation p.K40I 0.44 deleterious(0) possibly_damaging(0.609) TCGA-EE-A3J5-06 X 141291539 141291539 G A MAGEC2 Missense_Mutation p.L79F 0.67 tolerated(0.06) probably_damaging(0.961) TCGA-EE-A3J5-06 X 142605209 142605209 G A SPANXN3 Missense_Mutation p.P4L 0.78 deleterious(0.01) probably_damaging(0.984) TCGA-EE-A3J5-06 X 148072933 148072933 G A AFF2 3'UTR 0.79 TCGA-EE-A3J5-06 X 149999715 149999715 G A CD99L2 Missense_Mutation p.S40F 0.79 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3J5-06 X 150156485 150156485 T C HMGB3 3'UTR 0.72 TCGA-EE-A3J5-06 X 151900743 151900743 C T MAGEA12 Missense_Mutation p.G20R 0.68 tolerated(0.78) possibly_damaging(0.589) TCGA-EE-A3J5-06 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.73 TCGA-EE-A3J5-06 X 152860004 152860004 C G FAM58A Splice_Site p.X141_splice 0.77 TCGA-EE-A3J5-06 X 153043844 153043844 C T PLXNB3 Intron 0.60 TCGA-EE-A3J5-06 X 153070966 153070966 C T PDZD4 Silent p.E215E 0.77 TCGA-EE-A3J5-06 X 153175712 153175712 T G ARHGAP4 Missense_Mutation p.Q730P 0.73 deleterious(0.03) benign(0.282) TCGA-EE-A3J5-06 X 153579321 153579321 G A FLNA Missense_Mutation p.P2371L 0.81 deleterious(0) possibly_damaging(0.601) TCGA-EE-A3J5-06 X 153586928 153586928 C T FLNA Missense_Mutation p.E1495K 0.85 deleterious(0.04) possibly_damaging(0.673) TCGA-EE-A3J5-06 X 153716920 153716920 C A SLC10A3 Silent p.V120V 0.65 TCGA-EE-A3J5-06 X 15540483 15540483 G A BMX Silent p.R175R 0.66 TCGA-EE-A3J5-06 X 15540484 15540484 G A BMX Missense_Mutation p.A176T 0.66 tolerated(0.52) benign(0.002) TCGA-EE-A3J5-06 X 17072992 17072992 C T REPS2 Missense_Mutation p.H345Y 0.78 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J5-06 X 17742491 17742491 G A NHS Missense_Mutation p.R373Q 0.81 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J5-06 X 2408224 2408224 G A ZBED1 Silent p.A179A 0.49 TCGA-EE-A3J5-06 X 2408225 2408225 G A ZBED1 Missense_Mutation p.A179V 0.48 tolerated(0.27) benign(0.011) TCGA-EE-A3J5-06 X 24742541 24742541 A G POLA1 Silent p.K424K 0.71 TCGA-EE-A3J5-06 X 25014075 25014075 C T POLA1 3'UTR 0.68 TCGA-EE-A3J5-06 X 26157798 26157798 G A MAGEB18 Silent p.R232R 0.74 TCGA-EE-A3J5-06 X 27997054 27997054 C T DCAF8L1 3'UTR 0.59 TCGA-EE-A3J5-06 X 31089921 31089921 C T FTHL17 Silent p.E50E 0.59 TCGA-EE-A3J5-06 X 3240122 3240122 G A MXRA5 Missense_Mutation p.P1202S 0.83 tolerated(0.22) benign(0.044) TCGA-EE-A3J5-06 X 36162877 36162877 C T CHDC2 Missense_Mutation p.S487F 0.80 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-EE-A3J5-06 X 37027273 37027273 G A FAM47C Missense_Mutation p.E264K 0.71 tolerated(0.87) benign(0) TCGA-EE-A3J5-06 X 37027790 37027790 C T FAM47C Missense_Mutation p.S436F 0.78 deleterious(0) probably_damaging(0.934) TCGA-EE-A3J5-06 X 37431144 37431144 C T LANCL3 Silent p.F7F 0.65 TCGA-EE-A3J5-06 X 43662611 43662611 C T MAOB Nonsense_Mutation p.W107* 0.61 TCGA-EE-A3J5-06 X 49856860 49856860 C T CLCN5 Missense_Mutation p.S812F 0.79 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J5-06 X 49957283 49957283 C T AKAP4 Missense_Mutation p.G694E 0.58 tolerated(0.18) benign(0.049) TCGA-EE-A3J5-06 X 49957301 49957301 C T AKAP4 Missense_Mutation p.G688E 0.61 tolerated(0.1) probably_damaging(1) TCGA-EE-A3J5-06 X 51487587 51487587 C T GSPT2 Missense_Mutation p.P289S 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 X 52825618 52825618 C T SPANXN5 Missense_Mutation p.M43I 0.76 tolerated(0.14) benign(0.119) TCGA-EE-A3J5-06 X 53172141 53172141 C T LINC01155 RNA 0.72 TCGA-EE-A3J5-06 X 54209100 54209100 C G FAM120C Missense_Mutation p.D178H 0.68 tolerated(0.1) possibly_damaging(0.717) TCGA-EE-A3J5-06 X 57162278 57162278 G A SPIN2A Silent p.V251V 0.59 TCGA-EE-A3J5-06 X 69500629 69500629 G A ARR3 Missense_Mutation p.E343K 0.70 deleterious(0) possibly_damaging(0.49) TCGA-EE-A3J5-06 X 73063804 73063804 G A XIST RNA 0.64 TCGA-EE-A3J5-06 X 73961513 73961513 G A KIAA2022 Missense_Mutation p.S960F 0.76 deleterious(0.02) possibly_damaging(0.506) TCGA-EE-A3J5-06 X 83128218 83128218 G A CYLC1 Missense_Mutation p.E168K 0.58 tolerated(0.39) possibly_damaging(0.486) TCGA-EE-A3J5-06 X 83129179 83129179 C T CYLC1 Missense_Mutation p.S488F 0.69 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J5-06 X 84634289 84634289 C T POF1B Silent p.G57G 0.74 TCGA-EE-A3J5-06 X 8522054 8522054 G A KAL1 Silent p.V431V 0.78 TCGA-EE-A3J5-06 X 86888766 86888766 G A KLHL4 Missense_Mutation p.G523R 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A3J5-06 Y 22942837 22942837 C T RPS4Y2 Silent p.S237S 0.68 TCGA-EE-A3J5-06 Y 24457559 24457559 C T RBMY2FP RNA 0.35 TCGA-EE-A3J5-06 Y 3447713 3447713 C T TGIF2LY Missense_Mutation p.P143L 0.38 tolerated(0.83) benign(0.085) TCGA-EE-A3J5-06 Y 6942649 6942649 C T TBL1Y Missense_Mutation p.P315S 0.38 tolerated(0.55) probably_damaging(0.926) TCGA-EE-A3J5-06 Y 7235403 7235403 G A PRKY RNA 0.61 TCGA-EE-A3J7-06 10 100249954 100249954 C A HPSE2 Splice_Site p.X441_splice 0.26 TCGA-EE-A3J7-06 10 101544502 101544502 G A ABCC2 Silent p.K57K 0.48 TCGA-EE-A3J7-06 10 102265162 102265162 T A SEC31B Nonsense_Mutation p.K379* 0.46 TCGA-EE-A3J7-06 10 102743450 102743450 C T SEMA4G Silent p.S698S 0.33 TCGA-EE-A3J7-06 10 103546243 103546243 G A MGEA5 Missense_Mutation p.P906S 0.44 tolerated(0.41) probably_damaging(0.998) TCGA-EE-A3J7-06 10 103869429 103869429 G A LDB1 Silent p.P220P 0.41 TCGA-EE-A3J7-06 10 105800146 105800147 - G COL17A1 Frame_Shift_Ins p.G909Rfs*56 0.26 TCGA-EE-A3J7-06 10 105947086 105947086 G A WDR96 Missense_Mutation p.P618S 0.30 tolerated(0.39) possibly_damaging(0.495) TCGA-EE-A3J7-06 10 106130763 106130763 C T CCDC147 Silent p.V347V 0.37 TCGA-EE-A3J7-06 10 106917019 106917019 G C SORCS3 Missense_Mutation p.G536R 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 10 106927072 106927072 C T SORCS3 Silent p.A622A 0.33 TCGA-EE-A3J7-06 10 114905824 114905824 C T TCF7L2 Silent p.P281P 0.39 TCGA-EE-A3J7-06 10 115337808 115337808 C T HABP2 Missense_Mutation p.P158S 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 10 116048881 116048881 G A VWA2 Silent p.L585L 0.38 TCGA-EE-A3J7-06 10 116196096 116196096 C T ABLIM1 Missense_Mutation p.G754R 0.38 tolerated(0.06) possibly_damaging(0.908) TCGA-EE-A3J7-06 10 118394431 118394431 C T PNLIPRP2 Silent p.F299F 0.35 TCGA-EE-A3J7-06 10 123324046 123324046 C T FGFR2 Missense_Mutation p.D142N 0.36 tolerated(0.07) probably_damaging(0.998) TCGA-EE-A3J7-06 10 123670525 123670525 T C ATE1 Missense_Mutation p.K160R 0.36 tolerated(0.11) benign(0.008) TCGA-EE-A3J7-06 10 126370273 126370273 G A FAM53B Missense_Mutation p.P270L 0.40 deleterious(0) probably_damaging(0.958) TCGA-EE-A3J7-06 10 134016275 134016275 C T DPYSL4 Silent p.V469V 0.49 TCGA-EE-A3J7-06 10 134648171 134648171 G A TTC40 Missense_Mutation p.L2285F 0.48 tolerated(1) benign(0.001) TCGA-EE-A3J7-06 10 135087705 135087705 C T ADAM8 Missense_Mutation p.G62E 0.39 tolerated(0.27) benign(0.233) TCGA-EE-A3J7-06 10 17756835 17756835 G A STAM 3'UTR 0.52 TCGA-EE-A3J7-06 10 18828327 18828327 G A CACNB2 Missense_Mutation p.E553K 0.29 tolerated(0.11) possibly_damaging(0.496) TCGA-EE-A3J7-06 10 21097533 21097533 G A NEBL Silent p.F889F 0.41 TCGA-EE-A3J7-06 10 25887683 25887683 C T GPR158 Missense_Mutation p.S1043F 0.59 tolerated(0.08) benign(0.021) TCGA-EE-A3J7-06 10 27702693 27702693 C T PTCHD3 Missense_Mutation p.E163K 0.33 tolerated(0.48) benign(0.028) TCGA-EE-A3J7-06 10 37490190 37490190 G A ANKRD30A Missense_Mutation p.D880N 0.37 tolerated(0.19) benign(0.094) TCGA-EE-A3J7-06 10 37505199 37505199 G A ANKRD30A Missense_Mutation p.G931E 0.42 tolerated(0.76) benign(0.003) TCGA-EE-A3J7-06 10 37508414 37508414 G A ANKRD30A Silent p.R1202R 0.30 TCGA-EE-A3J7-06 10 46120052 46120075 CATTATTTCCATTCATTCCAACAC - ZFAND4 In_Frame_Del p.G628_N635del 0.13 TCGA-EE-A3J7-06 10 48371067 48371067 G A ZNF488 Missense_Mutation p.V179I 0.47 tolerated(0.28) benign(0.002) TCGA-EE-A3J7-06 10 48381965 48381965 C T RBP3 Silent p.E1228E 0.52 TCGA-EE-A3J7-06 10 48414000 48414000 C G GDF2 Missense_Mutation p.D290H 0.34 deleterious(0.04) benign(0.003) TCGA-EE-A3J7-06 10 48414001 48414001 C T GDF2 Silent p.K289K 0.36 TCGA-EE-A3J7-06 10 48429244 48429244 G A GDF10 Silent p.R214R 0.58 TCGA-EE-A3J7-06 10 49448490 49448490 T C FRMPD2 Missense_Mutation p.R205G 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 10 50724156 50724156 A C ERCC6-PGBD3 Missense_Mutation p.F803L 0.47 tolerated_low_confidence(1) unknown(0) TCGA-EE-A3J7-06 10 51582882 51582882 A G NCOA4 Missense_Mutation p.I235M 0.16 tolerated(0.14) benign(0.042) TCGA-EE-A3J7-06 10 52067877 52067877 C T SGMS1 Nonsense_Mutation p.W309* 0.37 TCGA-EE-A3J7-06 10 5238831 5238831 A G AKR1C4 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.011) TCGA-EE-A3J7-06 10 61414206 61414206 G A SLC16A9 Missense_Mutation p.S193F 0.10 tolerated(0.7) benign(0.005) TCGA-EE-A3J7-06 10 62023728 62023728 G A ANK3 Silent p.V188V 0.30 TCGA-EE-A3J7-06 10 64973537 64973537 G A JMJD1C Missense_Mutation p.P797L 0.42 deleterious(0.03) possibly_damaging(0.484) TCGA-EE-A3J7-06 10 6540402 6540402 G A PRKCQ Silent p.F166F 0.34 TCGA-EE-A3J7-06 10 69281676 69281676 G A CTNNA3 Missense_Mutation p.S168F 0.39 deleterious(0.04) possibly_damaging(0.788) TCGA-EE-A3J7-06 10 69934248 69934248 C T MYPN Missense_Mutation p.S800F 0.42 deleterious(0) possibly_damaging(0.534) TCGA-EE-A3J7-06 10 71008274 71008274 G A HKDC1 Missense_Mutation p.A454T 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 10 72299398 72299398 G A PALD1 Silent p.L596L 0.44 TCGA-EE-A3J7-06 10 72301249 72301249 G A PALD1 Missense_Mutation p.V694M 0.29 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3J7-06 10 73577183 73577183 G A PSAP 3'UTR 0.39 TCGA-EE-A3J7-06 10 7409679 7409679 A G SFMBT2 Missense_Mutation p.V123A 0.21 tolerated(0.08) probably_damaging(0.924) TCGA-EE-A3J7-06 10 74673068 74673068 C T OIT3 Missense_Mutation p.P265S 0.46 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J7-06 10 75289404 75289404 G A USP54 Intron 0.50 TCGA-EE-A3J7-06 10 75482224 75482224 C T RP11-574K11.28 RNA 0.53 TCGA-EE-A3J7-06 10 7621770 7621770 C T ITIH5 Missense_Mutation p.G456S 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 10 76468180 76468180 C T ADK Missense_Mutation p.P356S 0.42 tolerated(0.07) benign(0.424) TCGA-EE-A3J7-06 10 76797614 76797614 C T DUPD1 Missense_Mutation p.E215K 0.37 tolerated_low_confidence(0.38) benign(0) TCGA-EE-A3J7-06 10 79589264 79589264 G A DLG5 Silent p.I678I 0.45 TCGA-EE-A3J7-06 10 81373888 81373888 G A SFTPA1 3'UTR 0.42 TCGA-EE-A3J7-06 10 84738844 84738844 G A NRG3 Silent p.R517R 0.40 TCGA-EE-A3J7-06 10 84738857 84738857 G A NRG3 Missense_Mutation p.D522N 0.43 deleterious(0.02) possibly_damaging(0.65) TCGA-EE-A3J7-06 10 85970858 85970858 C T CDHR1 Silent p.S474S 0.44 TCGA-EE-A3J7-06 10 85992034 85992034 C G LRIT1 Missense_Mutation p.K507N 0.39 deleterious(0) probably_damaging(0.938) TCGA-EE-A3J7-06 10 86131537 86131537 C T CCSER2 Silent p.S243S 0.29 TCGA-EE-A3J7-06 10 88206201 88206201 G A WAPAL Silent p.F1040F 0.29 TCGA-EE-A3J7-06 10 88718536 88718536 G A SNCG Missense_Mutation p.E28K 0.49 deleterious(0.04) possibly_damaging(0.805) TCGA-EE-A3J7-06 10 90697867 90697867 C T ACTA2 Missense_Mutation p.R314Q 0.37 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A3J7-06 10 94836975 94836975 G A CYP26A1 Missense_Mutation p.G470R 0.38 tolerated(0.71) probably_damaging(1) TCGA-EE-A3J7-06 10 96702071 96702071 C T CYP2C9 Missense_Mutation p.L152F 0.44 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A3J7-06 10 96827385 96827385 G A CYP2C8 Missense_Mutation p.H78Y 0.48 tolerated(0.24) benign(0.161) TCGA-EE-A3J7-06 10 97096387 97096387 G A SORBS1 Missense_Mutation p.P1177L 0.37 tolerated_low_confidence(0.59) possibly_damaging(0.632) TCGA-EE-A3J7-06 10 98145823 98145823 C T TLL2 Missense_Mutation p.E668K 0.42 deleterious(0) possibly_damaging(0.769) TCGA-EE-A3J7-06 10 98155083 98155083 C T TLL2 Silent p.T529T 0.43 TCGA-EE-A3J7-06 10 99770906 99770906 G A CRTAC1 Silent p.I71I 0.41 TCGA-EE-A3J7-06 11 102482568 102482568 C T MMP20 Silent p.Q147Q 0.88 TCGA-EE-A3J7-06 11 103048371 103048371 G A DYNC2H1 Silent p.T1987T 0.27 TCGA-EE-A3J7-06 11 103339354 103339354 G A DYNC2H1 Missense_Mutation p.G4236E 0.92 possibly_damaging(0.749) TCGA-EE-A3J7-06 11 10582264 10582264 C T LYVE1 Missense_Mutation p.E161K 0.54 tolerated(0.13) benign(0.031) TCGA-EE-A3J7-06 11 10785932 10785932 C A CTR9 Silent p.L454L 0.37 TCGA-EE-A3J7-06 11 113705054 113705054 G A USP28 Missense_Mutation p.L180F 0.73 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 11 116656545 116656545 C T ZNF259 Silent p.K183K 0.47 TCGA-EE-A3J7-06 11 118365428 118365428 C T KMT2A Missense_Mutation p.P1770L 0.37 probably_damaging(0.999) TCGA-EE-A3J7-06 11 120175775 120175775 G A POU2F3 Missense_Mutation p.E163K 0.81 tolerated(0.06) benign(0.304) TCGA-EE-A3J7-06 11 121016408 121016408 C T TECTA Missense_Mutation p.P1230S 0.72 tolerated(0.22) probably_damaging(0.954) TCGA-EE-A3J7-06 11 124121107 124121107 C T OR8G1 Missense_Mutation p.R229C 0.85 tolerated_low_confidence(0.1) possibly_damaging(0.888) TCGA-EE-A3J7-06 11 1251274 1251274 G A MUC5B Silent p.P420P 0.49 TCGA-EE-A3J7-06 11 125550686 125550686 G A ACRV1 5'UTR 0.85 TCGA-EE-A3J7-06 11 1263990 1263990 G A MUC5B Silent p.G1960G 0.52 TCGA-EE-A3J7-06 11 1265445 1265445 G A MUC5B Silent p.T2445T 0.35 TCGA-EE-A3J7-06 11 128781893 128781893 G A KCNJ5 Missense_Mutation p.R242Q 0.86 tolerated(0.05) benign(0.013) TCGA-EE-A3J7-06 11 128781894 128781894 G A KCNJ5 Silent p.R242R 0.85 TCGA-EE-A3J7-06 11 130286925 130286925 C T ADAMTS8 Missense_Mutation p.D336N 0.10 deleterious(0.01) possibly_damaging(0.494) TCGA-EE-A3J7-06 11 133790479 133790479 G A IGSF9B Silent p.F1047F 0.87 TCGA-EE-A3J7-06 11 13736177 13736177 C T FAR1 Silent p.A359A 0.48 TCGA-EE-A3J7-06 11 13736178 13736178 C T FAR1 Missense_Mutation p.P360S 0.48 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3J7-06 11 16838749 16838749 G A PLEKHA7 Silent p.P488P 0.53 TCGA-EE-A3J7-06 11 17548864 17548864 G A USH1C Silent p.I134I 0.27 TCGA-EE-A3J7-06 11 1775285 1775285 G A CTSD Missense_Mutation p.P304L 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 11 1775286 1775286 G A CTSD Missense_Mutation p.P304S 0.52 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J7-06 11 18745806 18745806 C T IGSF22 5'UTR 0.41 TCGA-EE-A3J7-06 11 20628605 20628605 C T SLC6A5 Silent p.I244I 0.27 TCGA-EE-A3J7-06 11 22248889 22248889 C T ANO5 Silent p.A135A 0.43 TCGA-EE-A3J7-06 11 22363239 22363239 C T SLC17A6 Silent p.S84S 0.65 TCGA-EE-A3J7-06 11 24927579 24927579 T G LUZP2 Missense_Mutation p.C147G 0.49 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J7-06 11 31115691 31115691 C T DCDC1 Missense_Mutation p.G675E 0.37 tolerated(0.5) benign(0.007) TCGA-EE-A3J7-06 11 33569341 33569341 C T KIAA1549L Silent p.I842I 0.46 TCGA-EE-A3J7-06 11 35453824 35453824 C T PAMR1 3'UTR 0.70 TCGA-EE-A3J7-06 11 36483943 36483943 C T PRR5L Missense_Mutation p.S255F 0.26 tolerated(0.08) benign(0.429) TCGA-EE-A3J7-06 11 36595523 36595523 G A RAG1 Silent p.R223R 0.29 TCGA-EE-A3J7-06 11 36595792 36595792 G A RAG1 Missense_Mutation p.C313Y 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3J7-06 11 3681336 3681336 G A ART1 Missense_Mutation p.R196K 0.47 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 11 3707375 3707375 G A NUP98 Missense_Mutation p.P1502S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J7-06 11 4388870 4388870 G A OR52B4 Missense_Mutation p.S219F 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 11 43918749 43918749 C T ALKBH3 Intron 0.44 TCGA-EE-A3J7-06 11 4471397 4471397 C T OR52K2 Silent p.I276I 0.44 TCGA-EE-A3J7-06 11 4674278 4674278 C G OR51E1 Silent p.S174S 0.53 TCGA-EE-A3J7-06 11 48267270 48267270 C T OR4X2 Silent p.V205V 0.28 TCGA-EE-A3J7-06 11 4945015 4945015 C G OR51G1 Missense_Mutation p.E185D 0.32 tolerated(1) benign(0.002) TCGA-EE-A3J7-06 11 4968259 4968259 A C OR51A4 Nonsense_Mutation p.Y24* 0.18 TCGA-EE-A3J7-06 11 5021092 5021092 T A OR51L1 Missense_Mutation p.Y294N 0.28 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J7-06 11 5021131 5021131 C T OR51L1 Missense_Mutation p.H307Y 0.70 deleterious(0.04) benign(0.008) TCGA-EE-A3J7-06 11 51412038 51412038 G A OR4A5 Missense_Mutation p.R120C 0.38 deleterious_low_confidence(0.03) benign(0.035) TCGA-EE-A3J7-06 11 5444341 5444341 G A OR51Q1 Missense_Mutation p.G304E 0.76 tolerated(0.09) benign(0.049) TCGA-EE-A3J7-06 11 55110913 55110913 G A OR4A16 Silent p.L79L 0.45 TCGA-EE-A3J7-06 11 55735130 55735130 G A OR10AG1 Silent p.T270T 0.30 TCGA-EE-A3J7-06 11 557650 557650 G A C11orf35 Intron 0.54 TCGA-EE-A3J7-06 11 56756838 56756838 C T OR5AK2 Silent p.I150I 0.35 TCGA-EE-A3J7-06 11 57509641 57509641 C T C11orf31 Silent p.F107F 0.27 TCGA-EE-A3J7-06 11 5758698 5758698 C T OR56B1 Missense_Mutation p.L318F 0.52 tolerated(0.52) benign(0.001) TCGA-EE-A3J7-06 11 58491917 58491917 A G GLYAT Missense_Mutation p.L18S 0.57 deleterious(0) probably_damaging(0.989) TCGA-EE-A3J7-06 11 60567351 60567351 G A MS4A10 Missense_Mutation p.G258E 0.22 tolerated_low_confidence(0.15) benign(0.161) TCGA-EE-A3J7-06 11 60609844 60609844 G A CCDC86 Missense_Mutation p.G83R 0.54 tolerated(1) benign(0.001) TCGA-EE-A3J7-06 11 61183597 61183597 G A CPSF7 Silent p.A358A 0.35 TCGA-EE-A3J7-06 11 61643878 61643878 G A FADS3 Missense_Mutation p.P345S 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3J7-06 11 62361854 62361854 G A MTA2 Missense_Mutation p.S573F 0.44 tolerated_low_confidence(0.3) possibly_damaging(0.548) TCGA-EE-A3J7-06 11 63357818 63357818 T C PLA2G16 Silent p.A47A 0.27 TCGA-EE-A3J7-06 11 63426317 63426317 G A ATL3 Silent p.S107S 0.31 TCGA-EE-A3J7-06 11 6422613 6422613 G A APBB1 Missense_Mutation p.S515F 0.36 tolerated(0.15) possibly_damaging(0.753) TCGA-EE-A3J7-06 11 64520612 64520612 G A PYGM Missense_Mutation p.T484I 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 11 64663970 64663970 G A ATG2A Silent p.A1797A 0.36 TCGA-EE-A3J7-06 11 64676500 64676500 G A ATG2A Missense_Mutation p.P776L 0.69 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 11 64882814 64882814 G A TM7SF2 Silent p.A307A 0.35 TCGA-EE-A3J7-06 11 65147339 65147339 G A SLC25A45 Missense_Mutation p.S51F 0.56 deleterious(0) probably_damaging(0.914) TCGA-EE-A3J7-06 11 66330268 66330268 G A CTSF 3'Flank 0.33 TCGA-EE-A3J7-06 11 66472843 66472843 G A SPTBN2 Missense_Mutation p.A635V 0.13 tolerated(0.06) possibly_damaging(0.567) TCGA-EE-A3J7-06 11 6661491 6661491 G A DCHS1 Silent p.L452L 0.35 TCGA-EE-A3J7-06 11 6661492 6661492 T A DCHS1 Silent p.P451P 0.35 TCGA-EE-A3J7-06 11 67120853 67120853 G A POLD4 Silent p.L6L 0.31 TCGA-EE-A3J7-06 11 67164707 67164707 G A RAD9A Missense_Mutation p.M310I 0.24 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A3J7-06 11 6816306 6816306 G A OR6A2 Missense_Mutation p.L212F 0.40 tolerated(0.15) probably_damaging(0.994) TCGA-EE-A3J7-06 11 69972190 69972190 G A ANO1 Missense_Mutation p.G329D 0.28 deleterious(0) possibly_damaging(0.788) TCGA-EE-A3J7-06 11 70267599 70267599 A G CTTN Intron 0.31 TCGA-EE-A3J7-06 11 70332481 70332481 G A SHANK2 Missense_Mutation p.S1307F 0.28 deleterious(0) possibly_damaging(0.485) TCGA-EE-A3J7-06 11 7063813 7063813 G A NLRP14 Missense_Mutation p.G186R 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J7-06 11 74983964 74983964 C T ARRB1 Missense_Mutation p.V325M 0.33 deleterious(0) probably_damaging(0.956) TCGA-EE-A3J7-06 11 75298473 75298473 T G MAP6 Silent p.A691A 0.39 TCGA-EE-A3J7-06 11 76072103 76072103 G A PRKRIR Missense_Mutation p.P72L 0.31 deleterious(0) possibly_damaging(0.673) TCGA-EE-A3J7-06 11 764334 764334 C T TALDO1 Silent p.F294F 0.44 TCGA-EE-A3J7-06 11 7727857 7727857 T C OVCH2 Missense_Mutation p.K29E 0.33 tolerated(0.15) benign(0.066) TCGA-EE-A3J7-06 11 7982674 7982674 G A NLRP10 Missense_Mutation p.P162L 0.43 tolerated(0.44) benign(0.01) TCGA-EE-A3J7-06 11 8060559 8060559 G A TUB Missense_Mutation p.G47S 0.67 tolerated_low_confidence(0.08) probably_damaging(0.97) TCGA-EE-A3J7-06 11 8123176 8123176 C T TUB 3'UTR 0.25 TCGA-EE-A3J7-06 11 985546 985546 T G AP2A2 Missense_Mutation p.L309R 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 12 100813710 100813710 C T SLC17A8 Missense_Mutation p.L515F 0.33 tolerated(0.06) possibly_damaging(0.866) TCGA-EE-A3J7-06 12 1023639 1023639 G A RAD52 Silent p.L309L 0.60 TCGA-EE-A3J7-06 12 10603136 10603136 C T KLRC1 Missense_Mutation p.G77E 0.38 deleterious(0) probably_damaging(0.979) TCGA-EE-A3J7-06 12 107080872 107080872 G A RFX4 Silent p.E205E 0.46 TCGA-EE-A3J7-06 12 109306379 109306379 G A SVOP Nonsense_Mutation p.Q462* 0.38 TCGA-EE-A3J7-06 12 109313543 109313543 C T SVOP Nonsense_Mutation p.W327* 0.23 TCGA-EE-A3J7-06 12 109915077 109915077 G A KCTD10 5'UTR 0.40 TCGA-EE-A3J7-06 12 109940943 109940943 C T UBE3B Silent p.L466L 0.36 TCGA-EE-A3J7-06 12 110451049 110451049 C A ANKRD13A Missense_Mutation p.L117I 0.44 deleterious(0.03) benign(0.004) TCGA-EE-A3J7-06 12 111746297 111746297 C T CUX2 Missense_Mutation p.L409F 0.46 deleterious(0.02) possibly_damaging(0.894) TCGA-EE-A3J7-06 12 11214245 11214245 G A TAS2R46 Nonsense_Mutation p.Q217* 0.38 TCGA-EE-A3J7-06 12 116428926 116428926 G A MED13L Missense_Mutation p.A1278V 0.35 deleterious(0) unknown(0) TCGA-EE-A3J7-06 12 117914376 117914376 C T KSR2 Silent p.Q825Q 0.40 TCGA-EE-A3J7-06 12 117962701 117962701 G A KSR2 Silent p.F725F 0.46 TCGA-EE-A3J7-06 12 120150480 120150480 C T CIT Missense_Mutation p.E1534K 0.46 deleterious(0.03) benign(0.137) TCGA-EE-A3J7-06 12 120652670 120652670 G A PXN Silent p.L426L 0.41 TCGA-EE-A3J7-06 12 120941789 120941789 C T COQ5 Missense_Mutation p.R289Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J7-06 12 122614161 122614161 C T MLXIP Silent p.L241L 0.20 TCGA-EE-A3J7-06 12 123433228 123433228 G A ABCB9 Silent p.T332T 0.43 TCGA-EE-A3J7-06 12 124333348 124333348 C T DNAH10 Silent p.I1889I 0.35 TCGA-EE-A3J7-06 12 124341761 124341761 G A DNAH10 Silent p.L2081L 0.39 TCGA-EE-A3J7-06 12 124383315 124383315 C T DNAH10 Silent p.A3080A 0.42 TCGA-EE-A3J7-06 12 13715923 13715923 C T GRIN2B Missense_Mutation p.A1417T 0.50 tolerated(0.5) benign(0.071) TCGA-EE-A3J7-06 12 14577751 14577751 C T ATF7IP Missense_Mutation p.P301L 0.32 tolerated_low_confidence(0.14) possibly_damaging(0.851) TCGA-EE-A3J7-06 12 14798250 14798250 C T GUCY2C Splice_Site p.X571_splice 0.50 TCGA-EE-A3J7-06 12 16109925 16109925 G A DERA Silent p.A29A 0.11 TCGA-EE-A3J7-06 12 1755352 1755352 C T WNT5B Silent p.F338F 0.33 TCGA-EE-A3J7-06 12 1953652 1953652 C T CACNA2D4 Missense_Mutation p.D796N 0.47 deleterious(0.03) benign(0.078) TCGA-EE-A3J7-06 12 21028237 21028237 G A SLCO1B3 Missense_Mutation p.G266R 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 12 26592111 26592111 G A ITPR2 Nonsense_Mutation p.Q2198* 0.29 TCGA-EE-A3J7-06 12 2676817 2676817 C T CACNA1C Silent p.F584F 0.27 TCGA-EE-A3J7-06 12 32140250 32140250 G A KIAA1551 Missense_Mutation p.E1694K 0.41 tolerated(0.17) benign(0.038) TCGA-EE-A3J7-06 12 333208 333208 G A SLC6A13 Missense_Mutation p.L421F 0.35 deleterious(0.04) probably_damaging(0.962) TCGA-EE-A3J7-06 12 38710566 38710566 C T ALG10B 5'UTR 0.33 TCGA-EE-A3J7-06 12 4383338 4383338 C T CCND2 Silent p.F44F 0.49 TCGA-EE-A3J7-06 12 48137379 48137379 C T RAPGEF3 Missense_Mutation p.A587T 0.43 tolerated(0.2) benign(0.01) TCGA-EE-A3J7-06 12 50045894 50045894 G A FMNL3 Silent p.V475V 0.45 TCGA-EE-A3J7-06 12 52162882 52162882 C T SCN8A Silent p.I1045I 0.50 TCGA-EE-A3J7-06 12 52756677 52756677 G A KRT85 Silent p.I346I 0.35 TCGA-EE-A3J7-06 12 52789550 52789550 C T KRT82 Silent p.V438V 0.45 TCGA-EE-A3J7-06 12 53516968 53516968 C T SOAT2 Missense_Mutation p.P447L 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 12 53818111 53818111 C T AMHR2 Missense_Mutation p.P30L 0.49 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A3J7-06 12 54106594 54106594 G A CALCOCO1 Intron 0.41 TCGA-EE-A3J7-06 12 54686238 54686238 C T NFE2 Missense_Mutation p.E348K 0.36 deleterious(0.03) benign(0.076) TCGA-EE-A3J7-06 12 55846192 55846192 C T OR6C2 Silent p.S65S 0.30 TCGA-EE-A3J7-06 12 56993037 56993037 G A BAZ2A Missense_Mutation p.R1762W 0.24 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J7-06 12 57570838 57570838 G A LRP1 Missense_Mutation p.E1336K 0.35 benign(0.385) TCGA-EE-A3J7-06 12 57966029 57966029 G A KIF5A Silent p.V516V 0.70 TCGA-EE-A3J7-06 12 58010182 58010182 G A ARHGEF25 Silent p.Q551Q 0.26 TCGA-EE-A3J7-06 12 64485121 64485121 C T SRGAP1 Missense_Mutation p.T501I 0.38 tolerated(0.25) benign(0.001) TCGA-EE-A3J7-06 12 6754500 6754501 CT - ACRBP Frame_Shift_Del p.R120Sfs*13 0.13 TCGA-EE-A3J7-06 12 6839855 6839855 C T COPS7A Silent p.T219T 0.50 TCGA-EE-A3J7-06 12 69120344 69120344 C T NUP107 Missense_Mutation p.R548C 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 12 69140394 69140394 C T SLC35E3 Silent p.L79L 0.42 TCGA-EE-A3J7-06 12 7015068 7015068 G A LRRC23 Silent p.K62K 0.38 TCGA-EE-A3J7-06 12 7079364 7079364 G A PHB2 Silent p.H69H 0.07 TCGA-EE-A3J7-06 12 72009043 72009043 C T ZFC3H1 Missense_Mutation p.G1733E 0.40 tolerated(1) benign(0.003) TCGA-EE-A3J7-06 12 72416259 72416259 C T TPH2 Silent p.S383S 0.41 TCGA-EE-A3J7-06 12 7244122 7244122 C T C1R Missense_Mutation p.G52R 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 12 7244123 7244123 C T C1R Silent p.T51T 0.31 TCGA-EE-A3J7-06 12 7293967 7293967 G A CLSTN3 Missense_Mutation p.E485K 0.50 tolerated(0.05) benign(0.065) TCGA-EE-A3J7-06 12 73046189 73046189 C T TRHDE Silent p.F876F 0.27 TCGA-EE-A3J7-06 12 7647994 7647994 C T CD163 Missense_Mutation p.G368E 0.44 tolerated(0.2) benign(0.076) TCGA-EE-A3J7-06 12 7651689 7651689 C T CD163 Missense_Mutation p.D185N 0.30 tolerated(0.11) probably_damaging(0.99) TCGA-EE-A3J7-06 12 77423987 77423987 G A E2F7 Missense_Mutation p.S503F 0.46 tolerated(0.06) possibly_damaging(0.798) TCGA-EE-A3J7-06 12 7842962 7842962 C T GDF3 Missense_Mutation p.E203K 0.39 deleterious(0) probably_damaging(0.941) TCGA-EE-A3J7-06 12 80735836 80735836 C T OTOGL Missense_Mutation p.S1711L 0.44 tolerated(0.06) benign(0.011) TCGA-EE-A3J7-06 12 8212549 8212549 G A C3AR1 Missense_Mutation p.S78L 0.57 tolerated(0.07) benign(0.115) TCGA-EE-A3J7-06 12 85449926 85449926 A T LRRIQ1 Missense_Mutation p.D452V 0.53 tolerated(0.52) benign(0.205) TCGA-EE-A3J7-06 12 85450579 85450579 A G LRRIQ1 Missense_Mutation p.K670E 0.25 tolerated(0.06) benign(0.091) TCGA-EE-A3J7-06 12 8671757 8671757 G A CLEC4D Splice_Site p.X128_splice 0.31 TCGA-EE-A3J7-06 12 88939578 88939578 C T KITLG Missense_Mutation p.G27E 0.28 tolerated(0.35) benign(0.181) TCGA-EE-A3J7-06 12 9009896 9009896 G A A2ML1 Silent p.T995T 0.40 TCGA-EE-A3J7-06 12 91372011 91372011 C T EPYC Missense_Mutation p.G65E 0.52 tolerated(1) benign(0.002) TCGA-EE-A3J7-06 12 9248140 9248140 G A A2M Silent p.L670L 0.72 TCGA-EE-A3J7-06 12 96300182 96300182 C T CCDC38 Missense_Mutation p.D118N 0.46 tolerated(0.09) benign(0.077) TCGA-EE-A3J7-06 13 100211643 100211643 C T TM9SF2 Silent p.F593F 0.09 TCGA-EE-A3J7-06 13 100211644 100211644 C T TM9SF2 Missense_Mutation p.L594F 0.09 tolerated(0.2) benign(0.4) TCGA-EE-A3J7-06 13 102344973 102344973 G A ITGBL1 Missense_Mutation p.G352R 0.37 deleterious(0) possibly_damaging(0.887) TCGA-EE-A3J7-06 13 107823126 107823126 C T FAM155A Missense_Mutation p.E366K 0.18 deleterious(0.04) possibly_damaging(0.521) TCGA-EE-A3J7-06 13 113798296 113798296 G A F10 Missense_Mutation p.E212K 0.26 tolerated(0.19) benign(0.004) TCGA-EE-A3J7-06 13 114018440 114018440 C T GRTP1 5'UTR 0.25 TCGA-EE-A3J7-06 13 114778680 114778680 G A RASA3 Silent p.L484L 0.29 TCGA-EE-A3J7-06 13 19751628 19751628 G A TUBA3C Silent p.S165S 0.25 TCGA-EE-A3J7-06 13 21303121 21303121 G A N6AMT2 3'UTR 0.29 TCGA-EE-A3J7-06 13 23929371 23929371 G A SACS Silent p.L460L 0.39 TCGA-EE-A3J7-06 13 25481291 25481291 C T CENPJ Missense_Mutation p.E339K 0.10 deleterious(0) probably_damaging(0.922) TCGA-EE-A3J7-06 13 32367002 32367002 C T RXFP2 Silent p.F521F 0.41 TCGA-EE-A3J7-06 13 32811707 32811707 C T FRY Missense_Mutation p.A2001V 0.29 tolerated(0.26) possibly_damaging(0.782) TCGA-EE-A3J7-06 13 32972844 32972844 G T BRCA2 Missense_Mutation p.Q3398H 0.31 tolerated(0.2) benign(0.009) TCGA-EE-A3J7-06 13 36748880 36748880 G A SOHLH2 Silent p.I333I 0.27 TCGA-EE-A3J7-06 13 36776168 36776168 C T SOHLH2 Silent p.Q114Q 0.23 TCGA-EE-A3J7-06 13 37583908 37583908 T C SUPT20H Silent p.A747A 0.17 TCGA-EE-A3J7-06 13 46092966 46092966 T C COG3 Missense_Mutation p.L667S 0.66 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3J7-06 13 47315947 47315947 C T LRCH1 Silent p.V752V 0.28 TCGA-EE-A3J7-06 13 49772339 49772339 C T FNDC3A Silent p.S904S 0.29 TCGA-EE-A3J7-06 13 52516637 52516637 G A ATP7B Silent p.G1099G 0.32 TCGA-EE-A3J7-06 13 52524474 52524474 C T ATP7B Missense_Mutation p.G837R 0.19 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J7-06 13 61987604 61987604 G A PCDH20 Missense_Mutation p.P210S 0.54 tolerated(0.12) benign(0.109) TCGA-EE-A3J7-06 13 79191252 79191252 C A RNF219 Missense_Mutation p.G215V 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 13 94938600 94938600 C G GPC6 Intron 0.35 TCGA-EE-A3J7-06 13 99462528 99462528 G A DOCK9 Silent p.L1716L 0.54 TCGA-EE-A3J7-06 13 99575609 99575609 C T DOCK9 Missense_Mutation p.D145N 0.34 tolerated(0.06) possibly_damaging(0.533) TCGA-EE-A3J7-06 14 101412008 101412008 G A SNORD113-9 RNA 0.81 TCGA-EE-A3J7-06 14 102478657 102478657 C T DYNC1H1 Silent p.I2288I 0.85 TCGA-EE-A3J7-06 14 102505055 102505055 C T DYNC1H1 Silent p.L3692L 0.90 TCGA-EE-A3J7-06 14 103574810 103574810 C T EXOC3L4 Silent p.I644I 0.42 TCGA-EE-A3J7-06 14 103574811 103574811 C T EXOC3L4 Nonsense_Mutation p.Q645* 0.41 TCGA-EE-A3J7-06 14 105413978 105413978 C T AHNAK2 Missense_Mutation p.A2604T 0.88 benign(0.343) TCGA-EE-A3J7-06 14 106691916 106691916 G A IGHV3-21 Silent p.S36S 0.84 TCGA-EE-A3J7-06 14 20692709 20692709 A G OR11H6 Missense_Mutation p.T281A 0.97 tolerated(0.16) benign(0.053) TCGA-EE-A3J7-06 14 20943058 20943058 C T PNP Silent p.L138L 0.94 TCGA-EE-A3J7-06 14 21852052 21852052 C A SUPT16H Missense_Mutation p.R12L 0.79 deleterious(0.01) benign(0.169) TCGA-EE-A3J7-06 14 22280087 22280087 C T TRAV9-1 Silent p.F92F 0.62 TCGA-EE-A3J7-06 14 23888421 23888421 C T MYH7 Missense_Mutation p.E1313K 0.86 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A3J7-06 14 23901907 23901907 C T MYH7 Missense_Mutation p.S148N 0.88 tolerated(0.08) possibly_damaging(0.47) TCGA-EE-A3J7-06 14 24652710 24652710 G A IPO4 Silent p.F691F 0.22 TCGA-EE-A3J7-06 14 24652714 24652714 G C IPO4 Missense_Mutation p.A690G 0.19 tolerated(0.07) benign(0.079) TCGA-EE-A3J7-06 14 24709494 24709494 T C TINF2 Silent p.L368L 0.90 TCGA-EE-A3J7-06 14 24718553 24718553 T C TGM1 Missense_Mutation p.E807G 0.88 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-EE-A3J7-06 14 24787875 24787875 G A ADCY4 Silent p.V1022V 0.88 TCGA-EE-A3J7-06 14 36064993 36064993 T C RALGAPA1 Silent p.V1846V 0.73 TCGA-EE-A3J7-06 14 38724753 38724753 C T CLEC14A Missense_Mutation p.E159K 0.92 deleterious(0) probably_damaging(0.953) TCGA-EE-A3J7-06 14 62547972 62547972 G A SYT16 Missense_Mutation p.E472K 0.88 deleterious(0) benign(0.314) TCGA-EE-A3J7-06 14 64464056 64464056 C T SYNE2 Missense_Mutation p.P1064S 0.76 benign(0) TCGA-EE-A3J7-06 14 64882158 64882158 C T MTHFD1 Missense_Mutation p.S108F 0.89 deleterious(0.04) benign(0.081) TCGA-EE-A3J7-06 14 68086682 68086682 A G ARG2 5'UTR 0.40 TCGA-EE-A3J7-06 14 70171350 70171350 C T KIAA0247 Missense_Mutation p.P117S 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A3J7-06 14 70490067 70490067 G A SMOC1 Silent p.K398K 0.91 TCGA-EE-A3J7-06 14 74876442 74876442 C T SYNDIG1L Silent p.E2E 0.31 TCGA-EE-A3J7-06 14 75017886 75017886 G A LTBP2 Missense_Mutation p.L523F 0.90 tolerated(0.44) benign(0.001) TCGA-EE-A3J7-06 14 75264455 75264455 C T YLPM1 Nonsense_Mutation p.Q819* 0.83 TCGA-EE-A3J7-06 14 77732774 77732774 G A NGB 3'UTR 0.94 TCGA-EE-A3J7-06 14 94780706 94780706 C T SERPINA6 Missense_Mutation p.G94S 0.35 tolerated(0.1) probably_damaging(0.997) TCGA-EE-A3J7-06 15 20649568 20649568 C T HERC2P3 RNA 0.32 TCGA-EE-A3J7-06 15 23311808 23311808 G T HERC2P2 RNA 0.87 TCGA-EE-A3J7-06 15 24923989 24923989 G A NPAP1 Missense_Mutation p.G992E 0.92 deleterious(0.04) probably_damaging(0.961) TCGA-EE-A3J7-06 15 25330436 25330436 G A SNORD116-18 5'Flank 0.86 TCGA-EE-A3J7-06 15 25432759 25432759 G A SNORD115-10 RNA 0.87 TCGA-EE-A3J7-06 15 35083353 35083353 C T ACTC1 Missense_Mutation p.E318K 0.90 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-EE-A3J7-06 15 40657439 40657439 G A DISP2 Missense_Mutation p.D271N 0.93 tolerated(0.39) benign(0.098) TCGA-EE-A3J7-06 15 42116019 42116019 C T MAPKBP1 Missense_Mutation p.P1331S 0.91 tolerated(0.06) benign(0.004) TCGA-EE-A3J7-06 15 43585697 43585697 C T TGM7 Missense_Mutation p.S48N 0.88 tolerated(1) benign(0.005) TCGA-EE-A3J7-06 15 43815682 43815682 G A MAP1A Missense_Mutation p.E671K 0.77 possibly_damaging(0.734) TCGA-EE-A3J7-06 15 45428553 45428553 C T DUOX1 Silent p.I290I 0.13 TCGA-EE-A3J7-06 15 45709580 45709580 C T SPATA5L1 Missense_Mutation p.P651S 0.44 deleterious(0) probably_damaging(0.934) TCGA-EE-A3J7-06 15 50546388 50546388 C T HDC Missense_Mutation p.R220Q 0.77 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J7-06 15 55475591 55475591 T C RSL24D1 Missense_Mutation p.K114E 0.75 tolerated(0.35) benign(0.176) TCGA-EE-A3J7-06 15 55971583 55971583 C T PRTG Missense_Mutation p.R345Q 0.75 deleterious(0) probably_damaging(0.937) TCGA-EE-A3J7-06 15 66021535 66021535 C T DENND4A Silent p.L454L 0.78 TCGA-EE-A3J7-06 15 66821880 66821880 A T ZWILCH Missense_Mutation p.Q375L 0.90 deleterious(0.02) possibly_damaging(0.786) TCGA-EE-A3J7-06 15 69318946 69318946 G A NOX5 Silent p.G43G 0.73 TCGA-EE-A3J7-06 15 73616108 73616108 G A HCN4 Missense_Mutation p.P776S 0.82 tolerated(0.08) unknown(0) TCGA-EE-A3J7-06 15 74276222 74276222 C T STOML1 3'UTR 0.86 TCGA-EE-A3J7-06 15 74481580 74481580 G A STRA6 Silent p.I361I 0.90 TCGA-EE-A3J7-06 15 74483560 74483560 G A STRA6 Silent p.F310F 0.82 TCGA-EE-A3J7-06 15 75047465 75047465 G A CYP1A2 3'UTR 0.43 TCGA-EE-A3J7-06 15 78922179 78922179 C T CHRNB4 Silent p.E156E 0.92 TCGA-EE-A3J7-06 15 81426721 81426721 G A C15orf26 Silent p.E17E 0.86 TCGA-EE-A3J7-06 15 89869920 89869920 G A POLG Silent p.A545A 0.74 TCGA-EE-A3J7-06 15 91832897 91832897 C T SV2B Missense_Mutation p.P619S 0.71 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J7-06 15 92459677 92459677 C T SLCO3A1 Missense_Mutation p.S212L 0.80 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J7-06 15 93043709 93043709 C T C15orf32 3'UTR 0.74 TCGA-EE-A3J7-06 16 10851795 10851795 C T NUBP1 Missense_Mutation p.P173S 0.24 deleterious(0) possibly_damaging(0.777) TCGA-EE-A3J7-06 16 11000982 11000982 C A CIITA Missense_Mutation p.L545I 0.32 tolerated(0.24) benign(0.277) TCGA-EE-A3J7-06 16 1536082 1536082 C T PTX4 Missense_Mutation p.R427Q 0.54 deleterious(0.01) benign(0.263) TCGA-EE-A3J7-06 16 18434270 18434270 G A NPIPA8 5'Flank 0.17 TCGA-EE-A3J7-06 16 19554303 19554303 G A CCP110 Missense_Mutation p.R824Q 0.40 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A3J7-06 16 19718202 19718202 G A KNOP1 3'UTR 0.23 TCGA-EE-A3J7-06 16 20648722 20648722 C T ACSM1 Missense_Mutation p.G390R 0.21 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 16 20648723 20648723 C T ACSM1 Missense_Mutation p.M389I 0.20 tolerated(0.07) benign(0.032) TCGA-EE-A3J7-06 16 2115518 2115518 A G TSC2 Splice_Site p.X534_splice 0.04 TCGA-EE-A3J7-06 16 2136326 2136327 GT - TSC2 Frame_Shift_Del p.C1600Wfs*2 0.18 TCGA-EE-A3J7-06 16 24372999 24372999 C T CACNG3 Missense_Mutation p.H255Y 0.51 tolerated(0.08) benign(0.065) TCGA-EE-A3J7-06 16 2550412 2550412 C T TBC1D24 Silent p.F482F 0.55 TCGA-EE-A3J7-06 16 27506150 27506150 G A GTF3C1 Silent p.L904L 0.58 TCGA-EE-A3J7-06 16 28497721 28497721 G A CLN3 Silent p.S208S 0.66 TCGA-EE-A3J7-06 16 28549463 28549463 C T NUPR1 Silent p.R60R 0.26 TCGA-EE-A3J7-06 16 28549464 28549464 C T NUPR1 Missense_Mutation p.R60Q 0.27 deleterious(0.03) benign(0) TCGA-EE-A3J7-06 16 2946570 2946570 C T FLYWCH2 Silent p.S40S 0.26 TCGA-EE-A3J7-06 16 29816329 29816329 C A KIF22 Silent p.L624L 0.23 TCGA-EE-A3J7-06 16 29816330 29816330 C T KIF22 Missense_Mutation p.H625Y 0.23 tolerated(0.14) probably_damaging(0.998) TCGA-EE-A3J7-06 16 3071913 3071913 G A TNFRSF12A 3'UTR 0.30 TCGA-EE-A3J7-06 16 30732064 30732064 C T SRCAP Silent p.G1006G 0.32 TCGA-EE-A3J7-06 16 30732065 30732065 C T SRCAP Missense_Mutation p.R1007W 0.32 unknown(0) TCGA-EE-A3J7-06 16 31927242 31927242 C T ZNF267 Missense_Mutation p.P558S 0.65 tolerated(0.99) benign(0.11) TCGA-EE-A3J7-06 16 320594 320594 C T RGS11 Silent p.L378L 0.69 TCGA-EE-A3J7-06 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.24 unknown(0) TCGA-EE-A3J7-06 16 4797541 4797541 C T C16orf71 Missense_Mutation p.P493L 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J7-06 16 4815986 4815986 C T ZNF500 5'UTR 0.74 TCGA-EE-A3J7-06 16 56396472 56396472 A C AMFR 3'UTR 0.15 TCGA-EE-A3J7-06 16 57397450 57397450 G A CCL22 Missense_Mutation p.D78N 0.22 tolerated(0.56) possibly_damaging(0.771) TCGA-EE-A3J7-06 16 58010475 58010475 A G TEPP Missense_Mutation p.T34A 0.51 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J7-06 16 58073817 58073817 C T MMP15 Missense_Mutation p.S160L 0.67 deleterious(0) possibly_damaging(0.586) TCGA-EE-A3J7-06 16 58589735 58589735 G A CNOT1 Nonsense_Mutation p.Q853* 0.18 TCGA-EE-A3J7-06 16 58617062 58617062 G A CNOT1 Silent p.I277I 0.16 TCGA-EE-A3J7-06 16 61689437 61689437 G A CDH8 Missense_Mutation p.L615F 0.23 tolerated(0.18) probably_damaging(0.991) TCGA-EE-A3J7-06 16 61761101 61761101 G A CDH8 Missense_Mutation p.S478L 0.18 deleterious(0) possibly_damaging(0.903) TCGA-EE-A3J7-06 16 66943216 66943216 C T CDH16 Silent p.T782T 0.60 TCGA-EE-A3J7-06 16 67214001 67214001 G A KIAA0895L Silent p.P171P 0.61 TCGA-EE-A3J7-06 16 70562809 70562809 G T SF3B3 Missense_Mutation p.G35V 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J7-06 16 70929962 70929962 G A HYDIN Missense_Mutation p.L3024F 0.54 benign(0.049) TCGA-EE-A3J7-06 16 72830075 72830075 G A ZFHX3 Missense_Mutation p.S2169F 0.54 probably_damaging(0.998) TCGA-EE-A3J7-06 16 77334279 77334279 G A ADAMTS18 Missense_Mutation p.P852L 0.22 tolerated(0.11) benign(0.4) TCGA-EE-A3J7-06 16 81972454 81972454 C T PLCG2 Missense_Mutation p.P1083S 0.65 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 16 87367807 87367807 C T FBXO31 Missense_Mutation p.R361H 0.05 tolerated(0.12) benign(0.005) TCGA-EE-A3J7-06 16 87866414 87866414 G A SLC7A5 3'UTR 0.40 TCGA-EE-A3J7-06 16 88747685 88747685 G A SNAI3 Nonsense_Mutation p.Q172* 0.65 TCGA-EE-A3J7-06 16 89759817 89759817 C T CDK10 Silent p.L184L 0.30 TCGA-EE-A3J7-06 16 89789220 89789220 G A ZNF276 Missense_Mutation p.G163S 0.54 tolerated(0.07) benign(0.043) TCGA-EE-A3J7-06 16 89811436 89811436 C T FANCA Missense_Mutation p.R1186K 0.21 tolerated(0.85) benign(0.067) TCGA-EE-A3J7-06 16 9857546 9857546 C T GRIN2A Silent p.R1285R 0.35 TCGA-EE-A3J7-06 17 10209938 10209938 C T MYH13 Missense_Mutation p.M1768I 0.92 tolerated(0.06) benign(0.113) TCGA-EE-A3J7-06 17 10397696 10397696 G A MYH1 Missense_Mutation p.S1881F 0.89 deleterious(0) benign(0.166) TCGA-EE-A3J7-06 17 10448788 10448788 T C MYH2 Missense_Mutation p.N127S 0.86 deleterious(0.01) benign(0.382) TCGA-EE-A3J7-06 17 11556319 11556319 G A DNAH9 Silent p.Q865Q 0.97 TCGA-EE-A3J7-06 17 15641669 15641669 A C TBC1D26 Silent p.R119R 0.42 TCGA-EE-A3J7-06 17 16725634 16725634 G A AC022596.6 RNA 0.44 TCGA-EE-A3J7-06 17 18149956 18149956 G A FLII Silent p.T1001T 0.49 TCGA-EE-A3J7-06 17 18661787 18661787 C T FBXW10 Missense_Mutation p.L468F 0.12 deleterious(0) probably_damaging(0.97) TCGA-EE-A3J7-06 17 19318162 19318162 G A RNF112 Missense_Mutation p.G363E 0.89 tolerated(0.13) benign(0.186) TCGA-EE-A3J7-06 17 19318163 19318163 G A RNF112 Silent p.G363G 0.89 TCGA-EE-A3J7-06 17 19648365 19648365 C T ALDH3A1 Silent p.R26R 0.92 TCGA-EE-A3J7-06 17 26604400 26604400 T C AC061975.8 5'Flank 0.95 TCGA-EE-A3J7-06 17 27004735 27004735 C T SUPT6H Silent p.L300L 0.40 TCGA-EE-A3J7-06 17 34072047 34072047 C T GAS2L2 Silent p.K823K 0.89 TCGA-EE-A3J7-06 17 37009979 37009979 A C RPL23 5'UTR 0.50 TCGA-EE-A3J7-06 17 38142889 38142889 C T PSMD3 Missense_Mutation p.P158L 0.87 deleterious(0.02) benign(0.022) TCGA-EE-A3J7-06 17 38172816 38172816 G A CSF3 Missense_Mutation p.E131K 0.84 tolerated(0.31) benign(0.207) TCGA-EE-A3J7-06 17 39092524 39092524 C T KRT23 Missense_Mutation p.R111K 0.87 tolerated(0.17) probably_damaging(0.997) TCGA-EE-A3J7-06 17 39333921 39333921 C T KRTAP4-2 3'UTR 0.95 TCGA-EE-A3J7-06 17 40343158 40343158 A G GHDC Silent p.F320F 0.74 TCGA-EE-A3J7-06 17 40939481 40939481 C T WNK4 Silent p.F554F 0.89 TCGA-EE-A3J7-06 17 40958723 40958723 G A CNTD1 Silent p.R204R 0.89 TCGA-EE-A3J7-06 17 41349035 41349035 C T NBR1 Silent p.T646T 0.84 TCGA-EE-A3J7-06 17 47921472 47921472 C T TAC4 Silent p.T57T 0.88 TCGA-EE-A3J7-06 17 48072097 48072097 C T DLX3 Missense_Mutation p.G89E 0.10 deleterious(0.05) benign(0.043) TCGA-EE-A3J7-06 17 4995165 4995165 C T ZFP3 Silent p.F122F 0.22 TCGA-EE-A3J7-06 17 4995166 4995166 C T ZFP3 Silent p.L123L 0.22 TCGA-EE-A3J7-06 17 5372023 5372023 G A DHX33 Missense_Mutation p.P53S 0.08 tolerated(0.08) benign(0.001) TCGA-EE-A3J7-06 17 5383874 5383874 A G DERL2 Missense_Mutation p.F119S 0.91 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J7-06 17 54940014 54940014 G A DGKE Silent p.G522G 0.82 TCGA-EE-A3J7-06 17 56499644 56499644 C T HSF5 3'UTR 0.33 TCGA-EE-A3J7-06 17 62788589 62788589 G A PLEKHM1P RNA 0.27 TCGA-EE-A3J7-06 17 66416533 66416533 T C ARSG Missense_Mutation p.Y503H 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3J7-06 17 66426264 66426264 C T WIPI1 Missense_Mutation p.G280R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 17 7230914 7230914 G A NEURL4 Missense_Mutation p.A191V 0.87 deleterious(0) benign(0.089) TCGA-EE-A3J7-06 17 72469847 72469847 G A CD300A Silent p.R71R 0.35 TCGA-EE-A3J7-06 17 72916645 72916645 T A USH1G Missense_Mutation p.N96Y 0.90 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 17 7346499 7346499 C T FGF11 3'UTR 0.93 TCGA-EE-A3J7-06 17 73723752 73723752 C T ITGB4 Silent p.T95T 0.81 TCGA-EE-A3J7-06 17 74003457 74003457 C - EVPL Frame_Shift_Del p.L1944Sfs*20 0.38 TCGA-EE-A3J7-06 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.90 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 17 76411042 76411042 C G PGS1 Missense_Mutation p.H495Q 0.85 deleterious(0.01) benign(0.269) TCGA-EE-A3J7-06 17 76437281 76437281 C T DNAH17 Silent p.K3829K 0.51 TCGA-EE-A3J7-06 17 76506498 76506498 C T DNAH17 Missense_Mutation p.D1398N 0.31 possibly_damaging(0.67) TCGA-EE-A3J7-06 17 76506499 76506499 C T DNAH17 Silent p.V1397V 0.31 TCGA-EE-A3J7-06 17 7661952 7661952 C T DNAH2 Missense_Mutation p.R731C 0.80 probably_damaging(0.932) TCGA-EE-A3J7-06 17 7749422 7749422 G A KDM6B Missense_Mutation p.G88E 0.78 unknown(0) TCGA-EE-A3J7-06 17 7751588 7751588 G A KDM6B Missense_Mutation p.G661E 0.84 unknown(0) TCGA-EE-A3J7-06 17 7802714 7802714 C T CHD3 Silent p.N858N 0.88 TCGA-EE-A3J7-06 17 7809466 7809466 C T CHD3 Intron 0.85 TCGA-EE-A3J7-06 17 79419781 79419781 G A RP11-1055B8.7 Missense_Mutation p.R1450Q 0.36 probably_damaging(0.993) TCGA-EE-A3J7-06 17 79517678 79517678 G A C17orf70 Missense_Mutation p.P281L 0.93 deleterious(0) probably_damaging(0.941) TCGA-EE-A3J7-06 17 79974728 79974728 C T ASPSCR1 Silent p.A580A 0.26 TCGA-EE-A3J7-06 17 9395143 9395143 T A STX8 Intron 0.91 TCGA-EE-A3J7-06 18 21229140 21229140 G A ANKRD29 Silent p.A13A 0.41 TCGA-EE-A3J7-06 18 21526164 21526164 C T LAMA3 Silent p.A3089A 0.43 TCGA-EE-A3J7-06 18 28662324 28662324 C A DSC2 Missense_Mutation p.K381N 0.35 tolerated(0.05) probably_damaging(1) TCGA-EE-A3J7-06 18 28992935 28992935 G A DSG4 Missense_Mutation p.E853K 0.48 deleterious(0) possibly_damaging(0.759) TCGA-EE-A3J7-06 18 29867615 29867615 T A GAREM Silent p.G315G 0.40 TCGA-EE-A3J7-06 18 32887558 32887558 C T ZNF271 RNA 0.56 TCGA-EE-A3J7-06 18 34854417 34854417 C T CELF4 Missense_Mutation p.G220R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 18 55274437 55274437 G A NARS Silent p.A310A 0.44 TCGA-EE-A3J7-06 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.22 TCGA-EE-A3J7-06 18 61390696 61390696 C T SERPINB11 3'UTR 0.54 TCGA-EE-A3J7-06 18 67614074 67614074 A G CD226 Missense_Mutation p.L93P 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 18 67806951 67806951 A C RTTN Missense_Mutation p.V891G 0.40 tolerated(0.41) benign(0.015) TCGA-EE-A3J7-06 18 67817967 67817967 T A RTTN Missense_Mutation p.E644D 0.51 tolerated(0.75) benign(0.047) TCGA-EE-A3J7-06 18 74980740 74980740 G A GALR1 Missense_Mutation p.R311K 0.28 deleterious(0.03) possibly_damaging(0.835) TCGA-EE-A3J7-06 19 10112322 10112322 T A COL5A3 Missense_Mutation p.T330S 0.24 unknown(0) TCGA-EE-A3J7-06 19 10747048 10747048 A T SLC44A2 Missense_Mutation p.Q428L 0.44 tolerated(0.82) benign(0.001) TCGA-EE-A3J7-06 19 1080336 1080336 G A HMHA1 Missense_Mutation p.E612K 0.30 tolerated(0.19) benign(0.326) TCGA-EE-A3J7-06 19 10940945 10940945 C T DNM2 Missense_Mutation p.R812W 0.34 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EE-A3J7-06 19 11097627 11097627 C T SMARCA4 Silent p.P269P 0.46 TCGA-EE-A3J7-06 19 11097628 11097628 C T SMARCA4 Missense_Mutation p.P270S 0.46 benign(0.002) TCGA-EE-A3J7-06 19 1112039 1112039 C T SBNO2 Missense_Mutation p.A886T 0.25 deleterious(0) benign(0.299) TCGA-EE-A3J7-06 19 11227604 11227604 G A LDLR Missense_Mutation p.G592E 0.37 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A3J7-06 19 11240222 11240222 T A LDLR Missense_Mutation p.L808H 0.55 deleterious(0) probably_damaging(0.977) TCGA-EE-A3J7-06 19 12090002 12090002 C G ZNF763 3'UTR 0.32 TCGA-EE-A3J7-06 19 14507996 14507996 C T CD97 Missense_Mutation p.P196S 0.32 tolerated(0.29) benign(0.363) TCGA-EE-A3J7-06 19 14583464 14583464 T G PTGER1 Missense_Mutation p.K373Q 0.44 tolerated(0.09) unknown(0) TCGA-EE-A3J7-06 19 1462005 1462005 C T APC2 Missense_Mutation p.S561F 0.38 probably_damaging(0.984) TCGA-EE-A3J7-06 19 14910890 14910890 G A OR7C1 Missense_Mutation p.T20M 0.06 deleterious_low_confidence(0) benign(0.411) TCGA-EE-A3J7-06 19 15052767 15052767 C T OR7C2 Missense_Mutation p.S156F 0.41 deleterious_low_confidence(0.01) benign(0.182) TCGA-EE-A3J7-06 19 15053175 15053175 G T OR7C2 Missense_Mutation p.R292M 0.38 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EE-A3J7-06 19 15053176 15053176 G A OR7C2 Silent p.R292R 0.38 TCGA-EE-A3J7-06 19 15586350 15586350 C T PGLYRP2 Silent p.L377L 0.37 TCGA-EE-A3J7-06 19 15757899 15757899 C T CYP4F3 Silent p.F127F 0.31 TCGA-EE-A3J7-06 19 16503152 16503152 G A EPS15L1 Missense_Mutation p.S689L 0.45 deleterious(0.01) benign(0.435) TCGA-EE-A3J7-06 19 16860284 16860284 C T NWD1 Silent p.V277V 0.32 TCGA-EE-A3J7-06 19 16860285 16860285 C T NWD1 Missense_Mutation p.L278F 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-EE-A3J7-06 19 17000832 17000832 C T F2RL3 Silent p.A186A 0.59 TCGA-EE-A3J7-06 19 17370460 17370460 G A USHBP1 Nonsense_Mutation p.Q284* 0.41 TCGA-EE-A3J7-06 19 18729265 18729265 C T TMEM59L Missense_Mutation p.T288I 0.60 deleterious(0) possibly_damaging(0.773) TCGA-EE-A3J7-06 19 19243163 19243163 G A TMEM161A Silent p.S147S 0.45 TCGA-EE-A3J7-06 19 19381140 19381140 C T TM6SF2 Intron 0.35 TCGA-EE-A3J7-06 19 23926923 23926923 G A ZNF681 Missense_Mutation p.P477S 0.33 deleterious(0.04) probably_damaging(0.926) TCGA-EE-A3J7-06 19 2422097 2422097 G A TMPRSS9 Silent p.G766G 0.38 TCGA-EE-A3J7-06 19 24309789 24309789 A G ZNF254 Silent p.K329K 0.13 TCGA-EE-A3J7-06 19 24310004 24310004 T C ZNF254 Missense_Mutation p.V401A 0.15 tolerated(0.06) benign(0) TCGA-EE-A3J7-06 19 31767427 31767427 G A TSHZ3 3'UTR 0.31 TCGA-EE-A3J7-06 19 327884 327884 G A MIER2 Missense_Mutation p.P117S 0.35 deleterious(0.01) possibly_damaging(0.833) TCGA-EE-A3J7-06 19 33698422 33698422 C T LRP3 Missense_Mutation p.P752S 0.50 tolerated_low_confidence(0.09) benign(0.023) TCGA-EE-A3J7-06 19 35827096 35827096 G A CD22 Silent p.S190S 0.42 TCGA-EE-A3J7-06 19 36398661 36398661 A C TYROBP Missense_Mutation p.L22R 0.55 deleterious(0.01) possibly_damaging(0.754) TCGA-EE-A3J7-06 19 37917218 37917218 A G ZNF569 Silent p.D26D 0.45 TCGA-EE-A3J7-06 19 38024238 38024238 C T ZNF793 Silent p.I57I 0.50 TCGA-EE-A3J7-06 19 38103100 38103100 G A ZNF540 Missense_Mutation p.V307I 0.25 deleterious(0) benign(0.136) TCGA-EE-A3J7-06 19 40580675 40580675 T A ZNF780A Missense_Mutation p.E559D 0.46 tolerated(0.07) benign(0.034) TCGA-EE-A3J7-06 19 40895518 40895518 C T HIPK4 Missense_Mutation p.E98K 0.49 deleterious(0) probably_damaging(0.918) TCGA-EE-A3J7-06 19 40902257 40902257 G A PRX Missense_Mutation p.P668S 0.42 deleterious(0.01) possibly_damaging(0.803) TCGA-EE-A3J7-06 19 41594481 41594481 G A CYP2A13 Silent p.P35P 0.42 TCGA-EE-A3J7-06 19 41601880 41601880 G A CYP2A13 3'UTR 0.10 TCGA-EE-A3J7-06 19 42133291 42133291 G A CEACAM4 Missense_Mutation p.P14L 0.44 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A3J7-06 19 42342965 42342965 G A LYPD4 Silent p.F67F 0.49 TCGA-EE-A3J7-06 19 42794644 42794644 C T CIC Missense_Mutation p.P575L 0.40 benign(0.041) TCGA-EE-A3J7-06 19 42794645 42794645 C T CIC Silent p.P575P 0.41 TCGA-EE-A3J7-06 19 43586748 43586748 C T PSG2 5'UTR 0.42 TCGA-EE-A3J7-06 19 43762266 43762266 G A PSG9 Intron 0.43 TCGA-EE-A3J7-06 19 44981615 44981615 G A ZNF180 Silent p.S361S 0.36 TCGA-EE-A3J7-06 19 4512515 4512515 C T PLIN4 Missense_Mutation p.G472D 0.41 tolerated(0.14) possibly_damaging(0.71) TCGA-EE-A3J7-06 19 45281316 45281316 C T CBLC Missense_Mutation p.S43L 0.33 tolerated(0.11) possibly_damaging(0.67) TCGA-EE-A3J7-06 19 45389394 45389394 C T PVRL2 Missense_Mutation p.S422F 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-EE-A3J7-06 19 45422430 45422430 G T APOC1 Silent p.R65R 0.47 TCGA-EE-A3J7-06 19 45683139 45683139 G A BLOC1S3 Silent p.E195E 0.43 TCGA-EE-A3J7-06 19 46664137 46664137 A G IGFL2 Missense_Mutation p.S125G 0.38 tolerated(0.15) benign(0.068) TCGA-EE-A3J7-06 19 46973885 46973885 G A PNMAL1 Silent p.S136S 0.35 TCGA-EE-A3J7-06 19 48239706 48239706 C T EHD2 Silent p.I332I 0.30 TCGA-EE-A3J7-06 19 48879538 48879538 C T SYNGR4 Missense_Mutation p.P223L 0.33 deleterious(0.05) benign(0.086) TCGA-EE-A3J7-06 19 49148891 49148891 C T CA11 5'UTR 0.46 TCGA-EE-A3J7-06 19 49557665 49557665 G A CGB7 Silent p.P127P 0.30 TCGA-EE-A3J7-06 19 49622347 49622347 G A C19orf73 5'UTR 0.56 TCGA-EE-A3J7-06 19 50101043 50101043 G A PRR12 Missense_Mutation p.G1151S 0.76 probably_damaging(0.931) TCGA-EE-A3J7-06 19 50103127 50103127 C T PRR12 Missense_Mutation p.P1426L 0.33 benign(0) TCGA-EE-A3J7-06 19 50464043 50464043 C T SIGLEC11 Missense_Mutation p.G76R 0.29 tolerated(0.37) benign(0.008) TCGA-EE-A3J7-06 19 51363451 51363451 C T KLK3 3'UTR 0.42 TCGA-EE-A3J7-06 19 51563062 51563062 C T KLK13 Intron 0.35 TCGA-EE-A3J7-06 19 51647696 51647696 G A SIGLEC7 Missense_Mutation p.G156D 0.42 tolerated(0.07) probably_damaging(0.934) TCGA-EE-A3J7-06 19 51647925 51647925 C T SIGLEC7 Silent p.I232I 0.30 TCGA-EE-A3J7-06 19 51769074 51769074 C T SIGLECL1 Silent p.I116I 0.43 TCGA-EE-A3J7-06 19 52033937 52033937 G A SIGLEC6 Missense_Mutation p.S235F 0.40 deleterious(0) possibly_damaging(0.806) TCGA-EE-A3J7-06 19 52149516 52149516 C T SIGLEC14 Missense_Mutation p.V139M 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 19 52403376 52403376 G A ZNF649 5'UTR 0.42 TCGA-EE-A3J7-06 19 52497604 52497604 G A ZNF615 Missense_Mutation p.S253F 0.43 tolerated(0.09) possibly_damaging(0.734) TCGA-EE-A3J7-06 19 52619656 52619656 G A ZNF616 Missense_Mutation p.S254L 0.42 deleterious(0.04) probably_damaging(0.937) TCGA-EE-A3J7-06 19 53573081 53573081 G A ZNF160 Missense_Mutation p.H236Y 0.38 tolerated(0.12) benign(0.006) TCGA-EE-A3J7-06 19 53612696 53612696 G A ZNF415 Missense_Mutation p.S201L 0.42 tolerated(0.09) probably_damaging(0.978) TCGA-EE-A3J7-06 19 53762535 53762535 C T VN1R2 Missense_Mutation p.L303F 0.44 tolerated(0.1) benign(0.276) TCGA-EE-A3J7-06 19 54418680 54418680 C T CACNG7 Silent p.F115F 0.36 TCGA-EE-A3J7-06 19 54966554 54966554 C T LENG8 Missense_Mutation p.A278V 0.28 deleterious(0.04) benign(0.022) TCGA-EE-A3J7-06 19 54966555 54966555 C T LENG8 Silent p.A278A 0.28 TCGA-EE-A3J7-06 19 55597332 55597332 C T EPS8L1 Silent p.D503D 0.37 TCGA-EE-A3J7-06 19 56244627 56244627 C T NLRP9 Missense_Mutation p.M190I 0.17 deleterious(0.02) possibly_damaging(0.742) TCGA-EE-A3J7-06 19 56321526 56321526 G A NLRP11 Silent p.F150F 0.12 TCGA-EE-A3J7-06 19 56487552 56487552 T G NLRP8 Missense_Mutation p.L920R 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 19 56671150 56671150 C T ZNF444 Silent p.S188S 0.53 TCGA-EE-A3J7-06 19 56953163 56953163 G A ZNF667 Missense_Mutation p.L401F 0.43 tolerated(0.13) benign(0.002) TCGA-EE-A3J7-06 19 56953164 56953164 G A ZNF667 Silent p.S400S 0.42 TCGA-EE-A3J7-06 19 57175742 57175742 C T ZNF835 Silent p.E275E 0.39 TCGA-EE-A3J7-06 19 57648247 57648247 G A ZIM3 Missense_Mutation p.R79C 0.35 tolerated(0.19) benign(0.265) TCGA-EE-A3J7-06 19 57648248 57648248 G A ZIM3 Silent p.G78G 0.35 TCGA-EE-A3J7-06 19 5784033 5784033 G A PRR22 Silent p.F75F 0.21 TCGA-EE-A3J7-06 19 58132598 58132598 C T ZNF134 Missense_Mutation p.P371S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J7-06 19 5923822 5923822 C T RANBP3 Splice_Site p.X367_splice 0.45 TCGA-EE-A3J7-06 19 5923823 5923823 C T RANBP3 Missense_Mutation p.E367K 0.45 tolerated(0.12) possibly_damaging(0.721) TCGA-EE-A3J7-06 19 6452425 6452425 C T SLC25A23 Silent p.R323R 0.57 TCGA-EE-A3J7-06 19 6678293 6678293 C T C3 Missense_Mutation p.D1574N 0.41 deleterious(0) possibly_damaging(0.682) TCGA-EE-A3J7-06 19 6678294 6678294 C T C3 Silent p.S1573S 0.40 TCGA-EE-A3J7-06 19 6712535 6712535 A C C3 Missense_Mutation p.M368R 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3J7-06 19 6736626 6736626 C T GPR108 Missense_Mutation p.E73K 0.37 tolerated(0.36) benign(0.001) TCGA-EE-A3J7-06 19 6750333 6750333 C T TRIP10 Missense_Mutation p.L420F 0.46 tolerated(0.3) possibly_damaging(0.882) TCGA-EE-A3J7-06 19 7168027 7168027 G A INSR Missense_Mutation p.P521L 0.27 deleterious(0) possibly_damaging(0.786) TCGA-EE-A3J7-06 19 7614987 7614987 C T PNPLA6 Silent p.S610S 0.41 TCGA-EE-A3J7-06 19 7831586 7831586 G A CLEC4M Missense_Mutation p.G277R 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3J7-06 19 8188379 8188379 G A FBN3 Silent p.F1017F 0.47 TCGA-EE-A3J7-06 19 8620608 8620608 G A MYO1F Missense_Mutation p.P26S 0.37 tolerated(1) benign(0.003) TCGA-EE-A3J7-06 19 8661987 8661987 C T ADAMTS10 Silent p.G308G 0.45 TCGA-EE-A3J7-06 19 9013857 9013857 G A MUC16 Missense_Mutation p.P12845S 0.41 possibly_damaging(0.53) TCGA-EE-A3J7-06 19 9015342 9015342 G A MUC16 Missense_Mutation p.S12749F 0.35 possibly_damaging(0.655) TCGA-EE-A3J7-06 19 9017511 9017511 T C MUC16 Missense_Mutation p.K12605E 0.27 benign(0.136) TCGA-EE-A3J7-06 19 9057032 9057032 G A MUC16 Silent p.S10138S 0.60 TCGA-EE-A3J7-06 19 9058672 9058672 G T MUC16 Missense_Mutation p.Q9592K 0.36 unknown(0) TCGA-EE-A3J7-06 19 9059493 9059493 G A MUC16 Missense_Mutation p.T9318I 0.41 unknown(0) TCGA-EE-A3J7-06 19 9063255 9063255 G A MUC16 Missense_Mutation p.S8064F 0.41 unknown(0) TCGA-EE-A3J7-06 19 9065398 9065398 A T MUC16 Missense_Mutation p.S7350T 0.34 unknown(0) TCGA-EE-A3J7-06 19 9066340 9066340 G A MUC16 Missense_Mutation p.P7036S 0.38 unknown(0) TCGA-EE-A3J7-06 19 9082600 9082600 T C MUC16 Missense_Mutation p.Q3072R 0.47 unknown(0) TCGA-EE-A3J7-06 19 9090133 9090133 G A MUC16 Missense_Mutation p.S561F 0.37 unknown(0) TCGA-EE-A3J7-06 19 9091052 9091052 C T MUC16 Missense_Mutation p.E255K 0.39 unknown(0) TCGA-EE-A3J7-06 19 9091598 9091598 C T MUC16 Missense_Mutation p.G73R 0.37 unknown(0) TCGA-EE-A3J7-06 19 9325456 9325456 C T OR7D4 Missense_Mutation p.D20N 0.39 tolerated(0.1) benign(0.022) TCGA-EE-A3J7-06 19 9406613 9406613 G A ZNF699 Silent p.S489S 0.37 TCGA-EE-A3J7-06 19 9585962 9585962 G A ZNF560 Nonsense_Mutation p.Q10* 0.50 TCGA-EE-A3J7-06 19 9721471 9721471 G A ZNF561 Missense_Mutation p.S289F 0.38 tolerated(0.33) possibly_damaging(0.893) TCGA-EE-A3J7-06 1 100154844 100154844 C T PALMD Missense_Mutation p.P343L 0.38 tolerated(0.28) benign(0.001) TCGA-EE-A3J7-06 1 102271687 102271687 C T OLFM3 Missense_Mutation p.G215E 0.34 tolerated(0.41) probably_damaging(1) TCGA-EE-A3J7-06 1 103400111 103400111 C T COL11A1 Missense_Mutation p.G1165E 0.53 unknown(0) TCGA-EE-A3J7-06 1 109440582 109440582 T C GPSM2 Missense_Mutation p.V139A 0.07 deleterious(0.04) possibly_damaging(0.898) TCGA-EE-A3J7-06 1 11007824 11007824 G A C1orf127 Nonsense_Mutation p.Q790* 0.27 TCGA-EE-A3J7-06 1 11007825 11007825 G A C1orf127 Silent p.L789L 0.27 TCGA-EE-A3J7-06 1 110168821 110168821 C T AMPD2 Silent p.F185F 0.30 TCGA-EE-A3J7-06 1 110735143 110735143 C T SLC6A17 Silent p.I374I 0.16 TCGA-EE-A3J7-06 1 110735144 110735144 C T SLC6A17 Silent p.L375L 0.16 TCGA-EE-A3J7-06 1 111060109 111060109 C T KCNA10 Missense_Mutation p.G434E 0.67 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 1 112298503 112298503 C T DDX20 5'UTR 0.19 TCGA-EE-A3J7-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.59 tolerated(0.06) benign(0.006) TCGA-EE-A3J7-06 1 115266543 115266543 G A CSDE1 Nonsense_Mutation p.Q658* 0.51 TCGA-EE-A3J7-06 1 115466111 115466111 G A SYCP1 Missense_Mutation p.R587K 0.45 tolerated(0.09) benign(0.055) TCGA-EE-A3J7-06 1 115523956 115523956 G T SYCP1 Splice_Site p.X795_splice 0.22 TCGA-EE-A3J7-06 1 116675774 116675774 G A MAB21L3 Missense_Mutation p.E293K 0.29 deleterious(0.01) possibly_damaging(0.671) TCGA-EE-A3J7-06 1 117944839 117944839 C T MAN1A2 Nonsense_Mutation p.R112* 0.40 TCGA-EE-A3J7-06 1 118537122 118537122 G A SPAG17 Silent p.F1695F 0.38 TCGA-EE-A3J7-06 1 1192648 1192648 G A UBE2J2 Missense_Mutation p.P88L 0.17 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J7-06 1 120056926 120056926 G A HSD3B1 Silent p.T260T 0.58 TCGA-EE-A3J7-06 1 12027068 12027068 C T PLOD1 Missense_Mutation p.P559S 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-EE-A3J7-06 1 12835108 12835108 G T PRAMEF12 Missense_Mutation p.R33M 0.48 tolerated(0.45) possibly_damaging(0.54) TCGA-EE-A3J7-06 1 13497634 13497634 G A PRAMEF16 Missense_Mutation p.E311K 0.19 tolerated(1) benign(0.022) TCGA-EE-A3J7-06 1 13718468 13718468 G A PRAMEF17 Missense_Mutation p.E311K 0.26 tolerated(1) benign(0.007) TCGA-EE-A3J7-06 1 1431223 1431223 C T ATAD3B 3'UTR 0.23 TCGA-EE-A3J7-06 1 145522864 145522864 C T PEX11B Missense_Mutation p.S242F 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 1 149871954 149871954 G A BOLA1 Nonsense_Mutation p.W114* 0.30 TCGA-EE-A3J7-06 1 151491323 151491323 G A CGN Missense_Mutation p.G110R 0.64 tolerated(0.65) benign(0.109) TCGA-EE-A3J7-06 1 151785505 151785505 A T RORC Missense_Mutation p.F401L 0.39 deleterious(0.04) probably_damaging(0.956) TCGA-EE-A3J7-06 1 152277838 152277838 G A FLG Missense_Mutation p.S3175F 0.56 unknown(0) TCGA-EE-A3J7-06 1 152280073 152280073 C T FLG Missense_Mutation p.R2430Q 0.29 benign(0.097) TCGA-EE-A3J7-06 1 152381997 152381997 G A CRNN 3'UTR 0.78 TCGA-EE-A3J7-06 1 152552221 152552221 C T LCE3D Silent p.R64R 0.38 TCGA-EE-A3J7-06 1 152749155 152749155 C T LCE1F Missense_Mutation p.S103F 0.47 tolerated_low_confidence(0.06) unknown(0) TCGA-EE-A3J7-06 1 153800618 153800618 C A GATAD2B Missense_Mutation p.G69V 0.07 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J7-06 1 153914354 153914354 G A DENND4B Missense_Mutation p.P349L 0.35 deleterious(0) probably_damaging(0.925) TCGA-EE-A3J7-06 1 154315361 154315361 C T ATP8B2 Silent p.I492I 0.55 TCGA-EE-A3J7-06 1 154987431 154987431 C A ZBTB7B Missense_Mutation p.L133I 0.49 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3J7-06 1 155029730 155029730 A C ADAM15 Silent p.G405G 0.56 TCGA-EE-A3J7-06 1 155239418 155239418 C A CLK2 Missense_Mutation p.G87V 0.50 tolerated(0.18) probably_damaging(1) TCGA-EE-A3J7-06 1 155920117 155920117 G A ARHGEF2 Missense_Mutation p.R954C 0.25 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-EE-A3J7-06 1 156180108 156180108 C T SLC25A44 Silent p.G277G 0.65 TCGA-EE-A3J7-06 1 156504330 156504330 G A IQGAP3 Silent p.L1235L 0.89 TCGA-EE-A3J7-06 1 156552955 156552955 G A TTC24 Silent p.R344R 0.54 TCGA-EE-A3J7-06 1 157497674 157497674 G A FCRL5 Missense_Mutation p.R565C 0.22 deleterious(0) benign(0.288) TCGA-EE-A3J7-06 1 157516958 157516958 G T FCRL5 Missense_Mutation p.Q28K 0.25 deleterious(0.03) benign(0.105) TCGA-EE-A3J7-06 1 157766891 157766891 C T FCRL1 Silent p.K406K 0.49 TCGA-EE-A3J7-06 1 157768008 157768008 C T FCRL1 Missense_Mutation p.E353K 0.05 deleterious(0.01) possibly_damaging(0.573) TCGA-EE-A3J7-06 1 159033320 159033320 C T AIM2 Missense_Mutation p.G321R 0.08 tolerated(0.11) benign(0.026) TCGA-EE-A3J7-06 1 159558607 159558607 C T APCS 3'UTR 1.00 TCGA-EE-A3J7-06 1 15960018 15960018 C T DDI2 Missense_Mutation p.P197L 0.59 deleterious(0) possibly_damaging(0.764) TCGA-EE-A3J7-06 1 159803058 159803058 G A SLAMF8 Missense_Mutation p.G227E 0.53 deleterious(0.05) benign(0.071) TCGA-EE-A3J7-06 1 160146383 160146383 G A ATP1A4 Missense_Mutation p.G861R 0.22 tolerated(0.3) probably_damaging(1) TCGA-EE-A3J7-06 1 16464675 16464675 G A EPHA2 Missense_Mutation p.P329S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 1 16535154 16535154 C T ARHGEF19 Silent p.S132S 0.28 TCGA-EE-A3J7-06 1 171607827 171607827 C T MYOC Missense_Mutation p.E214K 0.42 deleterious(0) probably_damaging(0.967) TCGA-EE-A3J7-06 1 172434497 172434497 C T C1orf105 Missense_Mutation p.P134S 0.49 tolerated(0.64) possibly_damaging(0.803) TCGA-EE-A3J7-06 1 17279938 17279938 G A CROCC Missense_Mutation p.D1050N 0.38 possibly_damaging(0.511) TCGA-EE-A3J7-06 1 173933295 173933295 G C RC3H1 Silent p.A549A 0.50 TCGA-EE-A3J7-06 1 176564698 176564698 G A PAPPA2 Missense_Mutation p.R653H 0.13 tolerated(0.64) benign(0.003) TCGA-EE-A3J7-06 1 176640232 176640232 G C PAPPA2 Missense_Mutation p.K706N 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 1 177199087 177199087 G T BRINP2 Silent p.L25L 0.20 TCGA-EE-A3J7-06 1 179561797 179561797 G A TDRD5 Missense_Mutation p.R16K 0.25 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J7-06 1 180022198 180022198 C T CEP350 Missense_Mutation p.P1629L 0.89 probably_damaging(1) TCGA-EE-A3J7-06 1 180756945 180756945 C T XPR1 Nonsense_Mutation p.Q60* 0.56 TCGA-EE-A3J7-06 1 183852941 183852941 C T RGL1 Missense_Mutation p.S246F 0.20 tolerated(0.08) benign(0.001) TCGA-EE-A3J7-06 1 18691786 18691786 G A IGSF21 Missense_Mutation p.G204S 0.35 tolerated(0.28) possibly_damaging(0.508) TCGA-EE-A3J7-06 1 18809476 18809476 C A KLHDC7A Missense_Mutation p.D667E 0.28 tolerated(0.1) benign(0.124) TCGA-EE-A3J7-06 1 18809477 18809477 C G KLHDC7A Missense_Mutation p.R668G 0.28 deleterious(0) probably_damaging(0.911) TCGA-EE-A3J7-06 1 190423889 190423889 G A BRINP3 Silent p.F44F 0.49 TCGA-EE-A3J7-06 1 19166189 19166189 G A TAS1R2 Silent p.F808F 0.30 TCGA-EE-A3J7-06 1 19433144 19433144 C T UBR4 Silent p.R4104R 0.47 TCGA-EE-A3J7-06 1 196797325 196797325 G A CFHR1 Missense_Mutation p.E186K 0.30 tolerated(0.93) unknown(0) TCGA-EE-A3J7-06 1 197396920 197396920 G A CRB1 Nonsense_Mutation p.W822* 0.79 TCGA-EE-A3J7-06 1 201009192 201009192 G T CACNA1S Missense_Mutation p.L1797M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3J7-06 1 201779105 201779105 C T NAV1 Missense_Mutation p.T1478I 0.27 deleterious(0) probably_damaging(0.931) TCGA-EE-A3J7-06 1 201779106 201779106 C T NAV1 Silent p.T1478T 0.27 TCGA-EE-A3J7-06 1 202117681 202117681 C T PTPN7 3'UTR 0.65 TCGA-EE-A3J7-06 1 202117682 202117682 C T PTPN7 3'UTR 0.67 TCGA-EE-A3J7-06 1 203681256 203681256 G A ATP2B4 Missense_Mutation p.E734K 0.95 tolerated(0.2) possibly_damaging(0.715) TCGA-EE-A3J7-06 1 204091518 204091518 C T SOX13 Silent p.L339L 1.00 TCGA-EE-A3J7-06 1 20466008 20466008 G A PLA2G2F Missense_Mutation p.G30R 0.44 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J7-06 1 20490512 20490512 C T PLA2G2C Missense_Mutation p.R141K 0.53 tolerated(0.28) benign(0.022) TCGA-EE-A3J7-06 1 206240150 206240150 G A C1orf186 Missense_Mutation p.S101L 0.90 tolerated(0.19) benign(0.028) TCGA-EE-A3J7-06 1 209823368 209823368 G A LAMB3 Nonsense_Mutation p.R42* 0.19 TCGA-EE-A3J7-06 1 209823369 209823369 G A LAMB3 Silent p.L41L 0.19 TCGA-EE-A3J7-06 1 212792679 212792679 C G ATF3 Intron 0.29 TCGA-EE-A3J7-06 1 212792682 212792682 C T ATF3 Intron 0.26 TCGA-EE-A3J7-06 1 224008965 224008965 G A TP53BP2 Silent p.P44P 0.93 TCGA-EE-A3J7-06 1 224008966 224008966 G A TP53BP2 Missense_Mutation p.P44L 0.93 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 1 224475510 224475510 T C NVL Silent p.E587E 0.46 TCGA-EE-A3J7-06 1 226453309 226453309 C T LIN9 Silent p.S337S 0.21 TCGA-EE-A3J7-06 1 228596950 228596950 G A TRIM17 Missense_Mutation p.P269L 0.04 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3J7-06 1 22923846 22923846 A G EPHA8 Missense_Mutation p.K603E 0.32 tolerated(0.14) benign(0.165) TCGA-EE-A3J7-06 1 231488299 231488299 C T SPRTN Intron 0.49 TCGA-EE-A3J7-06 1 233122150 233122150 C A PCNXL2 Silent p.L1976L 0.60 TCGA-EE-A3J7-06 1 23382520 23382520 T A KDM1A Missense_Mutation p.L327M 0.30 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J7-06 1 235345322 235345322 G A ARID4B Missense_Mutation p.T971I 0.92 deleterious_low_confidence(0.05) benign(0.249) TCGA-EE-A3J7-06 1 235969576 235969576 G A LYST Missense_Mutation p.P954S 0.16 tolerated_low_confidence(0.35) benign(0.013) TCGA-EE-A3J7-06 1 235973733 235973733 G A LYST Silent p.L129L 0.61 TCGA-EE-A3J7-06 1 23664332 23664332 C T HNRNPR Missense_Mutation p.G100E 0.59 deleterious(0) probably_damaging(0.97) TCGA-EE-A3J7-06 1 241929524 241929524 C T WDR64 Missense_Mutation p.P641L 0.47 tolerated(0.21) benign(0.158) TCGA-EE-A3J7-06 1 247614950 247614950 C T OR2B11 Missense_Mutation p.G112E 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 1 248201627 248201627 T C OR2L2 Missense_Mutation p.S20P 0.44 deleterious(0.02) benign(0.019) TCGA-EE-A3J7-06 1 248366836 248366836 G A OR2M3 Missense_Mutation p.G156E 0.51 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3J7-06 1 248637323 248637323 C T OR2T3 Silent p.T224T 0.05 TCGA-EE-A3J7-06 1 2524340 2524340 G A MMEL1 Missense_Mutation p.R645W 0.15 deleterious(0.02) benign(0.005) TCGA-EE-A3J7-06 1 26301045 26301045 G A PAFAH2 Silent p.F285F 0.25 TCGA-EE-A3J7-06 1 26691026 26691026 G A ZNF683 Silent p.L337L 0.21 TCGA-EE-A3J7-06 1 27117292 27117292 C T PIGV 5'UTR 0.44 TCGA-EE-A3J7-06 1 27875442 27875442 G T AHDC1 Missense_Mutation p.T1062K 0.75 deleterious(0) possibly_damaging(0.607) TCGA-EE-A3J7-06 1 28160948 28160964 CCTTGTGTCAAAGGCTT - PPP1R8 Intron 0.33 TCGA-EE-A3J7-06 1 28564327 28564327 T C ATPIF1 Intron 0.09 TCGA-EE-A3J7-06 1 28595741 28595741 C A SESN2 Silent p.A46A 0.24 TCGA-EE-A3J7-06 1 31347415 31347415 G A SDC3 Silent p.F297F 0.55 TCGA-EE-A3J7-06 1 33236792 33236792 C T KIAA1522 Missense_Mutation p.S671F 0.63 deleterious(0.01) unknown(0) TCGA-EE-A3J7-06 1 33282828 33282828 G A YARS Silent p.S6S 0.35 TCGA-EE-A3J7-06 1 33613051 33613051 G A TRIM62 Silent p.G385G 0.56 TCGA-EE-A3J7-06 1 34006261 34006261 C T CSMD2 Silent p.G3021G 0.05 TCGA-EE-A3J7-06 1 34330046 34330046 G A HMGB4 Missense_Mutation p.R85Q 0.51 deleterious(0.05) possibly_damaging(0.749) TCGA-EE-A3J7-06 1 3547718 3547718 G A WRAP73 Intron 0.28 TCGA-EE-A3J7-06 1 36505490 36505490 C T AGO3 Missense_Mutation p.R648W 0.24 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J7-06 1 36645994 36645994 T C MAP7D1 3'UTR 0.47 TCGA-EE-A3J7-06 1 38411978 38411978 C A INPP5B Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A3J7-06 1 43675545 43675545 G C WDR65 Missense_Mutation p.K629N 0.27 tolerated(0.28) benign(0.022) TCGA-EE-A3J7-06 1 44595193 44595193 G A KLF17 Missense_Mutation p.E84K 0.52 deleterious(0.01) probably_damaging(0.948) TCGA-EE-A3J7-06 1 46745133 46745133 C T LRRC41 Intron 0.43 TCGA-EE-A3J7-06 1 47108892 47108892 T C ATPAF1 Missense_Mutation p.T279A 0.11 tolerated(0.15) benign(0.437) TCGA-EE-A3J7-06 1 52759346 52759346 C T ZFYVE9 Nonsense_Mutation p.R1083* 0.48 TCGA-EE-A3J7-06 1 53122568 53122568 G A FAM159A Silent p.Q143Q 0.33 TCGA-EE-A3J7-06 1 53980363 53980363 C T GLIS1 Silent p.L431L 0.41 TCGA-EE-A3J7-06 1 54360058 54360058 G A DIO1 Missense_Mutation p.D59N 0.46 deleterious(0.02) possibly_damaging(0.641) TCGA-EE-A3J7-06 1 57171796 57171796 G A PRKAA2 Missense_Mutation p.R442K 0.27 tolerated(0.51) benign(0.033) TCGA-EE-A3J7-06 1 57233561 57233561 G A C1orf168 Missense_Mutation p.S335L 0.28 deleterious(0) probably_damaging(0.978) TCGA-EE-A3J7-06 1 6147560 6147560 C T KCNAB2 Silent p.F153F 0.52 TCGA-EE-A3J7-06 1 64033988 64033988 C T EFCAB7 Missense_Mutation p.P502L 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 1 64095131 64095131 C T PGM1 Silent p.L112L 0.63 TCGA-EE-A3J7-06 1 66067186 66067186 G A LEPR Nonsense_Mutation p.W369* 0.20 TCGA-EE-A3J7-06 1 68151154 68151154 C T GADD45A 5'UTR 0.46 TCGA-EE-A3J7-06 1 74701788 74701788 G A FPGT-TNNI3K Missense_Mutation p.E129K 0.22 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-EE-A3J7-06 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.24 TCGA-EE-A3J7-06 1 75086477 75086477 T A C1orf173 Missense_Mutation p.Y314F 0.45 deleterious(0.04) benign(0.437) TCGA-EE-A3J7-06 1 7895934 7895934 C T PER3 Silent p.A1100A 0.29 TCGA-EE-A3J7-06 1 8418550 8418550 G A RERE Missense_Mutation p.R1349W 0.29 unknown(0) TCGA-EE-A3J7-06 1 84961718 84961718 C A RPF1 Silent p.R285R 0.21 TCGA-EE-A3J7-06 1 87041138 87041138 G A CLCA4 Missense_Mutation p.D603N 0.51 tolerated(0.33) benign(0.314) TCGA-EE-A3J7-06 1 90180551 90180551 C T LRRC8C 3'UTR 0.25 TCGA-EE-A3J7-06 1 9305520 9305520 T A H6PD Missense_Mutation p.F176Y 0.60 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 1 93091480 93091480 G A EVI5 Silent p.S497S 0.27 TCGA-EE-A3J7-06 1 94645431 94645431 T C ARHGAP29 Missense_Mutation p.Q777R 0.26 tolerated(0.53) benign(0.02) TCGA-EE-A3J7-06 1 94697158 94697158 G A ARHGAP29 Missense_Mutation p.H4Y 0.23 tolerated_low_confidence(0.1) benign(0.008) TCGA-EE-A3J7-06 1 9661186 9661186 C T TMEM201 Silent p.S210S 0.46 TCGA-EE-A3J7-06 20 13098175 13098175 C T SPTLC3 Silent p.L319L 0.27 TCGA-EE-A3J7-06 20 1460519 1460519 G A SIRPB2 Missense_Mutation p.P93S 0.43 tolerated(0.06) possibly_damaging(0.749) TCGA-EE-A3J7-06 20 17434589 17434589 C T PCSK2 Missense_Mutation p.P363L 0.50 tolerated(0.06) probably_damaging(1) TCGA-EE-A3J7-06 20 18608840 18608840 C T DTD1 Missense_Mutation p.S147L 0.41 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J7-06 20 19193608 19193608 C T SLC24A3 Missense_Mutation p.S41L 0.21 deleterious(0.05) benign(0.042) TCGA-EE-A3J7-06 20 19662566 19662566 G A SLC24A3 Missense_Mutation p.G278R 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3J7-06 20 23420837 23420837 G A CSTL1 5'UTR 0.37 TCGA-EE-A3J7-06 20 2597726 2597726 C T TMC2 Missense_Mutation p.S650F 0.39 deleterious(0) probably_damaging(0.972) TCGA-EE-A3J7-06 20 30227861 30227861 G A COX4I2 Missense_Mutation p.G70R 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J7-06 20 30539707 30539707 C T PDRG1 Missense_Mutation p.A20T 0.20 tolerated(0.06) probably_damaging(0.948) TCGA-EE-A3J7-06 20 31643289 31643289 A G BPIFB3 Silent p.P20P 0.10 TCGA-EE-A3J7-06 20 31890830 31890830 G A BPIFB1 Missense_Mutation p.E364K 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A3J7-06 20 33067434 33067434 G A ITCH Splice_Site p.X594_splice 0.13 TCGA-EE-A3J7-06 20 33233114 33233114 G A PIGU Missense_Mutation p.H74Y 0.38 tolerated(0.2) probably_damaging(0.996) TCGA-EE-A3J7-06 20 33529574 33529574 G A GSS Missense_Mutation p.P184S 0.44 tolerated(0.06) benign(0.316) TCGA-EE-A3J7-06 20 33584226 33584226 G A MYH7B Silent p.Q1049Q 0.54 TCGA-EE-A3J7-06 20 34091156 34091156 C T CEP250 Silent p.L1653L 0.46 TCGA-EE-A3J7-06 20 34263027 34263027 C A NFS1 Silent p.V296V 0.44 TCGA-EE-A3J7-06 20 35929739 35929739 G C MANBAL Missense_Mutation p.G25R 0.50 deleterious(0.05) probably_damaging(1) TCGA-EE-A3J7-06 20 36779354 36779354 C T TGM2 Nonsense_Mutation p.W180* 0.41 TCGA-EE-A3J7-06 20 3680096 3680096 G A SIGLEC1 Silent p.L513L 0.64 TCGA-EE-A3J7-06 20 42143224 42143224 G A L3MBTL1 Intron 0.53 TCGA-EE-A3J7-06 20 42194926 42194926 G A SGK2 5'UTR 0.43 TCGA-EE-A3J7-06 20 42788431 42788431 G A JPH2 Silent p.P332P 0.45 TCGA-EE-A3J7-06 20 43385563 43385563 C T RIMS4 Silent p.E190E 0.45 TCGA-EE-A3J7-06 20 44313599 44313599 C T WFDC10B Missense_Mutation p.G47E 0.43 tolerated_low_confidence(1) benign(0.201) TCGA-EE-A3J7-06 20 44441988 44441988 C - UBE2C Intron 0.22 TCGA-EE-A3J7-06 20 44519989 44519989 C T CTSA Missense_Mutation p.P9S 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.447) TCGA-EE-A3J7-06 20 44815477 44815477 G A CDH22 Silent p.A511A 0.52 TCGA-EE-A3J7-06 20 46318953 46318953 C T SULF2 Missense_Mutation p.M218I 0.51 tolerated(0.1) probably_damaging(0.953) TCGA-EE-A3J7-06 20 47305233 47305233 C T PREX1 Silent p.R432R 0.19 TCGA-EE-A3J7-06 20 4771127 4771127 G A RASSF2 Silent p.F169F 0.36 TCGA-EE-A3J7-06 20 47855819 47855819 T C DDX27 Missense_Mutation p.V645A 0.17 tolerated(0.81) benign(0.003) TCGA-EE-A3J7-06 20 48124592 48124592 G A PTGIS Silent p.F456F 0.17 TCGA-EE-A3J7-06 20 49197870 49197870 C T PTPN1 Missense_Mutation p.S386F 0.34 tolerated(0.07) benign(0.002) TCGA-EE-A3J7-06 20 49225058 49225058 C T FAM65C Missense_Mutation p.R271Q 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A3J7-06 20 52773722 52773722 C T CYP24A1 Missense_Mutation p.R514Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J7-06 20 53205048 53205048 C T DOK5 Silent p.N67N 0.19 TCGA-EE-A3J7-06 20 56726015 56726015 G A C20orf85 5'UTR 0.47 TCGA-EE-A3J7-06 20 56726016 56726016 G A C20orf85 5'UTR 0.47 TCGA-EE-A3J7-06 20 57288560 57288560 C T NPEPL1 Silent p.A362A 0.47 TCGA-EE-A3J7-06 20 57766169 57766169 C T ZNF831 Missense_Mutation p.S32L 0.48 deleterious(0) probably_damaging(0.981) TCGA-EE-A3J7-06 20 57766995 57766995 G C ZNF831 Silent p.P307P 0.29 TCGA-EE-A3J7-06 20 57768115 57768115 C T ZNF831 Missense_Mutation p.H681Y 0.46 tolerated(1) benign(0.001) TCGA-EE-A3J7-06 20 5903571 5903571 G A CHGB Missense_Mutation p.E261K 0.61 deleterious(0.01) possibly_damaging(0.874) TCGA-EE-A3J7-06 20 60712006 60712006 C A PSMA7 Splice_Site p.X219_splice 0.37 TCGA-EE-A3J7-06 20 60864340 60864340 C T OSBPL2 Silent p.D401D 0.44 TCGA-EE-A3J7-06 20 61288114 61288114 A G SLCO4A1 Missense_Mutation p.K103R 0.39 tolerated(0.51) benign(0.052) TCGA-EE-A3J7-06 20 61386057 61386057 C T NTSR1 Silent p.F245F 0.15 TCGA-EE-A3J7-06 20 61445102 61445102 C T OGFR 3'UTR 0.40 TCGA-EE-A3J7-06 20 61445103 61445103 C T OGFR 3'UTR 0.40 TCGA-EE-A3J7-06 20 61594944 61594944 T C SLC17A9 Missense_Mutation p.V245A 0.14 deleterious(0) possibly_damaging(0.626) TCGA-EE-A3J7-06 20 62364624 62364624 C T ZGPAT Missense_Mutation p.P213L 0.46 tolerated(0.11) possibly_damaging(0.714) TCGA-EE-A3J7-06 20 62871785 62871785 G A MYT1 Missense_Mutation p.R1117K 0.41 benign(0.012) TCGA-EE-A3J7-06 20 8698409 8698409 G T PLCB1 Missense_Mutation p.G476V 0.14 tolerated(0.06) benign(0.003) TCGA-EE-A3J7-06 20 9400512 9400512 G A PLCB4 Missense_Mutation p.E692K 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J7-06 20 947858 947858 G A RSPO4 Missense_Mutation p.P123L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 21 15537565 15537565 C T LIPI Missense_Mutation p.E315K 0.52 tolerated(0.76) benign(0.001) TCGA-EE-A3J7-06 21 19629404 19629404 G A CHODL Silent p.R169R 0.06 TCGA-EE-A3J7-06 21 30357224 30357224 C T LTN1 Missense_Mutation p.R168Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 21 31654498 31654498 C T KRTAP24-1 Silent p.L251L 0.09 TCGA-EE-A3J7-06 21 32119353 32119353 G A KRTAP21-2 Silent p.G56G 0.29 TCGA-EE-A3J7-06 21 40715075 40715075 G A HMGN1 Missense_Mutation p.S89F 0.31 deleterious(0.03) probably_damaging(0.943) TCGA-EE-A3J7-06 21 42771212 42771212 C T MX2 Silent p.I454I 0.27 TCGA-EE-A3J7-06 21 42821111 42821111 C T MX1 Missense_Mutation p.R441C 0.56 deleterious(0.01) possibly_damaging(0.763) TCGA-EE-A3J7-06 21 43524059 43524059 G A UMODL1 Missense_Mutation p.G461R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 21 43833312 43833312 G A UBASH3A Silent p.T178T 0.23 TCGA-EE-A3J7-06 21 45089808 45089808 C T RRP1B Silent p.L58L 0.43 TCGA-EE-A3J7-06 21 45843526 45843526 A G TRPM2 Splice_Site p.X1154_splice 0.55 TCGA-EE-A3J7-06 21 46687372 46687372 G A POFUT2 Intron 0.21 TCGA-EE-A3J7-06 21 47836465 47836465 C T PCNT Silent p.P2211P 0.40 TCGA-EE-A3J7-06 21 47977514 47977514 C T DIP2A Nonsense_Mutation p.Q1216* 0.26 TCGA-EE-A3J7-06 22 17073356 17073356 C T CCT8L2 Missense_Mutation p.E29K 0.41 tolerated(0.58) benign(0.122) TCGA-EE-A3J7-06 22 18301315 18301315 G A MICAL3 Missense_Mutation p.S1371F 0.43 benign(0.235) TCGA-EE-A3J7-06 22 19184164 19184164 G A CLTCL1 Missense_Mutation p.R1293C 0.40 deleterious(0.03) possibly_damaging(0.866) TCGA-EE-A3J7-06 22 20073953 20073953 G A DGCR8 Missense_Mutation p.S156N 0.46 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J7-06 22 20230341 20230341 G A RTN4R Silent p.A105A 0.16 TCGA-EE-A3J7-06 22 21087380 21087380 G A PI4KA Silent p.P1389P 0.32 TCGA-EE-A3J7-06 22 23214022 23214022 G A IGLV4-3 Missense_Mutation p.G60E 0.38 tolerated(0.06) benign(0.195) TCGA-EE-A3J7-06 22 23401775 23401775 C T RTDR1 Silent p.E304E 0.21 TCGA-EE-A3J7-06 22 23742681 23742681 C T ZDHHC8P1 RNA 0.61 TCGA-EE-A3J7-06 22 24459419 24459419 T C CABIN1 Intron 0.20 TCGA-EE-A3J7-06 22 25023936 25023936 C T GGT1 Silent p.F442F 0.45 TCGA-EE-A3J7-06 22 25270530 25270530 G A SGSM1 Silent p.P480P 0.43 TCGA-EE-A3J7-06 22 26422411 26422411 G A MYO18B Silent p.R2157R 0.40 TCGA-EE-A3J7-06 22 29704556 29704556 C T GAS2L1 Missense_Mutation p.A154V 0.35 deleterious(0.03) probably_damaging(0.993) TCGA-EE-A3J7-06 22 29704557 29704557 C T GAS2L1 Silent p.A154A 0.35 TCGA-EE-A3J7-06 22 29737602 29737602 C T AP1B1 Missense_Mutation p.E562K 0.11 tolerated(0.06) benign(0.021) TCGA-EE-A3J7-06 22 30771580 30771580 A G CCDC157 Silent p.L595L 0.18 TCGA-EE-A3J7-06 22 33733715 33733715 G A LARGE Silent p.L402L 0.45 TCGA-EE-A3J7-06 22 38051524 38051524 C T SH3BP1 Missense_Mutation p.P647S 0.22 tolerated_low_confidence(0.2) unknown(0) TCGA-EE-A3J7-06 22 38370059 38370059 T C SOX10 Missense_Mutation p.S282G 0.03 deleterious(0.02) probably_damaging(0.97) TCGA-EE-A3J7-06 22 38948707 38948707 G A DMC1 Missense_Mutation p.R129C 0.35 deleterious(0) probably_damaging(0.984) TCGA-EE-A3J7-06 22 39132377 39132377 C T SUN2 Silent p.T704T 0.23 TCGA-EE-A3J7-06 22 39530418 39530418 G A CBX7 Missense_Mutation p.P196S 0.23 tolerated(0.14) possibly_damaging(0.468) TCGA-EE-A3J7-06 22 39811541 39811541 C T TAB1 Silent p.N69N 0.12 TCGA-EE-A3J7-06 22 39918231 39918231 C T ATF4 Missense_Mutation p.S227F 0.38 deleterious(0) benign(0.235) TCGA-EE-A3J7-06 22 40061888 40061888 C T CACNA1I Silent p.L1327L 0.40 TCGA-EE-A3J7-06 22 41783607 41783607 C T TEF Missense_Mutation p.S137F 0.52 tolerated(0.08) benign(0.163) TCGA-EE-A3J7-06 22 41864692 41864692 G A PHF5A 5'UTR 0.51 TCGA-EE-A3J7-06 22 43218407 43218407 G A ARFGAP3 Silent p.A227A 0.45 TCGA-EE-A3J7-06 22 43218408 43218408 G A ARFGAP3 Missense_Mutation p.A227V 0.45 tolerated(0.07) benign(0.08) TCGA-EE-A3J7-06 22 43528975 43528975 A G MCAT 3'UTR 0.55 TCGA-EE-A3J7-06 22 45241179 45241179 C T ARHGAP8 Silent p.I331I 0.49 TCGA-EE-A3J7-06 22 45241180 45241180 C T ARHGAP8 Missense_Mutation p.P332S 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 22 45316363 45316363 C T PHF21B Missense_Mutation p.G43E 0.23 deleterious(0) possibly_damaging(0.84) TCGA-EE-A3J7-06 22 46792594 46792594 C T CELSR1 Silent p.E1917E 0.44 TCGA-EE-A3J7-06 22 50944159 50944159 T C LMF2 Missense_Mutation p.D287G 0.05 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 2 100022401 100022401 G A REV1 Silent p.L928L 0.77 TCGA-EE-A3J7-06 2 100022402 100022402 G A REV1 Silent p.N927N 0.77 TCGA-EE-A3J7-06 2 101883186 101883186 C T CNOT11 Silent p.G361G 0.31 TCGA-EE-A3J7-06 2 101967334 101967334 T C CREG2 3'UTR 0.24 TCGA-EE-A3J7-06 2 102641101 102641101 G A IL1R2 Silent p.P286P 0.06 TCGA-EE-A3J7-06 2 102968044 102968044 T G IL1RL1 Missense_Mutation p.I445S 0.10 deleterious(0) probably_damaging(0.932) TCGA-EE-A3J7-06 2 103274193 103274193 G T SLC9A2 Missense_Mutation p.G154C 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 2 106694261 106694261 G A C2orf40 Missense_Mutation p.R109Q 0.09 deleterious(0.02) benign(0.012) TCGA-EE-A3J7-06 2 1079275 1079275 G A SNTG2 Silent p.T48T 0.86 TCGA-EE-A3J7-06 2 108487725 108487725 A C RGPD4 Missense_Mutation p.K1089Q 0.09 tolerated(0.25) possibly_damaging(0.873) TCGA-EE-A3J7-06 2 109352090 109352090 C T RANBP2 Missense_Mutation p.R170W 0.40 deleterious(0) possibly_damaging(0.531) TCGA-EE-A3J7-06 2 11389836 11389837 - A ROCK2 Frame_Shift_Ins p.W138Lfs*12 0.17 TCGA-EE-A3J7-06 2 116101408 116101408 C T DPP10 Missense_Mutation p.S68L 0.09 tolerated(0.33) benign(0.001) TCGA-EE-A3J7-06 2 120005282 120005282 G A STEAP3 Missense_Mutation p.A184T 0.67 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 2 128471452 128471452 G A WDR33 Missense_Mutation p.P1005S 0.05 tolerated_low_confidence(0.55) benign(0.032) TCGA-EE-A3J7-06 2 130832760 130832760 C T POTEF Missense_Mutation p.R762K 0.79 deleterious_low_confidence(0.02) benign(0.43) TCGA-EE-A3J7-06 2 132021356 132021356 C T POTEE Silent p.I776I 0.44 TCGA-EE-A3J7-06 2 132276161 132276161 C T AC093838.4 RNA 0.85 TCGA-EE-A3J7-06 2 135630212 135630212 G A ACMSD Splice_Site p.X283_splice 0.74 TCGA-EE-A3J7-06 2 135926253 135926253 C T RAB3GAP1 Missense_Mutation p.P957S 0.28 tolerated(0.14) possibly_damaging(0.574) TCGA-EE-A3J7-06 2 141460054 141460054 T A LRP1B Missense_Mutation p.K2031M 0.63 probably_damaging(0.934) TCGA-EE-A3J7-06 2 143973980 143973980 A C ARHGAP15 Missense_Mutation p.K88Q 0.26 tolerated(0.13) probably_damaging(0.976) TCGA-EE-A3J7-06 2 152410454 152410454 G T NEB Missense_Mutation p.S6505Y 0.78 probably_damaging(0.942) TCGA-EE-A3J7-06 2 152529135 152529135 G A NEB Silent p.L1349L 0.85 TCGA-EE-A3J7-06 2 160661572 160661572 G A LY75 Intron 0.10 TCGA-EE-A3J7-06 2 162849764 162849764 A G DPP4 3'UTR 0.76 TCGA-EE-A3J7-06 2 170557707 170557707 C T PHOSPHO2 Missense_Mutation p.P76S 0.10 tolerated(0.07) benign(0.006) TCGA-EE-A3J7-06 2 17699085 17699085 C T RAD51AP2 Missense_Mutation p.E200K 0.08 tolerated(0.21) benign(0.203) TCGA-EE-A3J7-06 2 179412758 179412758 C T TTN Missense_Mutation p.E31199K 1.00 TCGA-EE-A3J7-06 2 179412796 179412796 A G TTN Missense_Mutation p.V31186A 0.13 TCGA-EE-A3J7-06 2 179425152 179425152 A G TTN Silent p.L28569L 0.91 TCGA-EE-A3J7-06 2 179498632 179498632 C T TTN Silent p.L14198L 0.04 TCGA-EE-A3J7-06 2 179598410 179598410 C T TTN Missense_Mutation p.G5236S 0.77 TCGA-EE-A3J7-06 2 179638758 179638758 G A TTN Silent p.V2379V 0.89 TCGA-EE-A3J7-06 2 179650595 179650595 C T TTN Missense_Mutation p.G784R 0.36 TCGA-EE-A3J7-06 2 180383312 180383312 G A ZNF385B Silent p.P150P 0.79 TCGA-EE-A3J7-06 2 182521566 182521566 C T CERKL Silent p.R56R 0.07 TCGA-EE-A3J7-06 2 190922019 190922019 G A MSTN Missense_Mutation p.P365S 0.88 deleterious(0.01) possibly_damaging(0.82) TCGA-EE-A3J7-06 2 196673492 196673492 G A DNAH7 Nonsense_Mutation p.R3333* 0.77 TCGA-EE-A3J7-06 2 198353814 198353814 T C HSPD1 Missense_Mutation p.E376G 0.09 tolerated(0.29) possibly_damaging(0.825) TCGA-EE-A3J7-06 2 215882781 215882781 C T ABCA12 Missense_Mutation p.R578K 0.78 tolerated(0.49) benign(0.007) TCGA-EE-A3J7-06 2 217297462 217297462 C T SMARCAL1 Silent p.G452G 0.62 TCGA-EE-A3J7-06 2 219875643 219875643 C T CCDC108 Missense_Mutation p.E1345K 0.74 tolerated(0.14) benign(0.073) TCGA-EE-A3J7-06 2 219903674 219903674 G A CCDC108 Missense_Mutation p.L33F 0.08 tolerated_low_confidence(0.06) benign(0.169) TCGA-EE-A3J7-06 2 226446942 226446942 A C NYAP2 Missense_Mutation p.E270A 0.85 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 2 227906890 227906890 C T COL4A4 Missense_Mutation p.G1160E 0.07 unknown(0) TCGA-EE-A3J7-06 2 227953470 227953470 G A COL4A4 Missense_Mutation p.P508S 0.71 probably_damaging(0.96) TCGA-EE-A3J7-06 2 230231825 230231825 C T DNER Nonsense_Mutation p.W622* 0.75 TCGA-EE-A3J7-06 2 234602180 234602180 C T UGT1A6 Missense_Mutation p.S177F 0.28 tolerated(0.05) possibly_damaging(0.882) TCGA-EE-A3J7-06 2 234602181 234602181 C T UGT1A6 Silent p.S177S 0.28 TCGA-EE-A3J7-06 2 235950337 235950337 T C SH3BP4 Silent p.G308G 0.14 TCGA-EE-A3J7-06 2 237490146 237490146 C T ACKR3 Silent p.A346A 0.76 TCGA-EE-A3J7-06 2 238296529 238296529 C T COL6A3 Silent p.R336R 0.12 TCGA-EE-A3J7-06 2 238296530 238296530 C T COL6A3 Missense_Mutation p.R336Q 0.15 benign(0.153) TCGA-EE-A3J7-06 2 239003128 239003128 C T SCLY Missense_Mutation p.T366I 0.09 deleterious(0) probably_damaging(0.943) TCGA-EE-A3J7-06 2 240982298 240982298 C T PRR21 Silent p.T34T 0.20 TCGA-EE-A3J7-06 2 241421665 241421665 G A ANKMY1 Silent p.P851P 0.76 TCGA-EE-A3J7-06 2 241700163 241700163 G A KIF1A Missense_Mutation p.P788L 0.81 deleterious(0.02) benign(0.012) TCGA-EE-A3J7-06 2 26203522 26203522 G A KIF3C Missense_Mutation p.P422L 0.88 benign(0.016) TCGA-EE-A3J7-06 2 27346828 27346828 C A ABHD1 Silent p.S4S 0.07 TCGA-EE-A3J7-06 2 31215761 31215761 T G GALNT14 Intron 0.78 TCGA-EE-A3J7-06 2 37105142 37105144 AGA - STRN In_Frame_Del p.S405del 0.29 TCGA-EE-A3J7-06 2 37543573 37543573 G A PRKD3 Missense_Mutation p.P32L 0.08 deleterious_low_confidence(0.02) benign(0.002) TCGA-EE-A3J7-06 2 37543574 37543574 G A PRKD3 Missense_Mutation p.P32S 0.10 tolerated_low_confidence(0.1) benign(0.01) TCGA-EE-A3J7-06 2 47656987 47656987 C T MSH2 Nonsense_Mutation p.Q395* 0.78 TCGA-EE-A3J7-06 2 69172503 69172503 A G GKN2 Silent p.V184V 0.83 TCGA-EE-A3J7-06 2 71825755 71825755 C T DYSF Silent p.T1212T 0.76 TCGA-EE-A3J7-06 2 73215456 73215456 G A SFXN5 Nonsense_Mutation p.Q186* 0.85 TCGA-EE-A3J7-06 2 73455927 73455927 C T PRADC1 Missense_Mutation p.D148N 0.15 tolerated(0.62) probably_damaging(0.971) TCGA-EE-A3J7-06 2 74042462 74042462 A C C2orf78 Missense_Mutation p.K371T 0.79 tolerated(0.18) benign(0.246) TCGA-EE-A3J7-06 2 74074526 74074526 G A STAMBP Missense_Mutation p.E130K 0.71 tolerated(0.27) benign(0.019) TCGA-EE-A3J7-06 2 74140759 74140759 C T ACTG2 Missense_Mutation p.S200F 0.76 deleterious_low_confidence(0.02) possibly_damaging(0.755) TCGA-EE-A3J7-06 2 75745252 75745252 G A EVA1A Silent p.L5L 0.08 TCGA-EE-A3J7-06 2 89247062 89247062 A G IGKV1-5 Silent p.S36S 0.05 TCGA-EE-A3J7-06 2 89247063 89247063 G A IGKV1-5 Missense_Mutation p.S36F 0.05 deleterious(0.02) possibly_damaging(0.745) TCGA-EE-A3J7-06 2 96949076 96949076 G A SNRNP200 Missense_Mutation p.T1593I 0.81 deleterious(0.05) benign(0.042) TCGA-EE-A3J7-06 2 97361546 97361546 G A FER1L5 RNA 0.33 TCGA-EE-A3J7-06 3 100497169 100497169 G A ABI3BP Missense_Mutation p.P720L 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A3J7-06 3 113684069 113684069 C T KIAA1407 Missense_Mutation p.R915K 0.30 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J7-06 3 120417383 120417383 G A RABL3 Missense_Mutation p.P141S 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 3 121647371 121647371 C T SLC15A2 Missense_Mutation p.S437F 0.19 tolerated(0.71) benign(0.013) TCGA-EE-A3J7-06 3 121720613 121720613 C T ILDR1 Missense_Mutation p.E160K 0.40 deleterious(0.02) probably_damaging(0.98) TCGA-EE-A3J7-06 3 122002657 122002657 T C CASR Missense_Mutation p.F629S 0.44 tolerated(0.09) possibly_damaging(0.552) TCGA-EE-A3J7-06 3 122259599 122259599 G A PARP9 Silent p.A530A 0.48 TCGA-EE-A3J7-06 3 123452895 123452895 G A MYLK Silent p.P316P 0.20 TCGA-EE-A3J7-06 3 123512533 123512533 G A MYLK Silent p.F52F 0.41 TCGA-EE-A3J7-06 3 125691007 125691007 G A ROPN1B Missense_Mutation p.G37E 0.43 deleterious(0.01) benign(0.191) TCGA-EE-A3J7-06 3 126155217 126155217 G A CCDC37 Silent p.E602E 0.39 TCGA-EE-A3J7-06 3 127441340 127441340 A T MGLL Nonsense_Mutation p.L111* 0.28 TCGA-EE-A3J7-06 3 131219361 131219361 G A MRPL3 Silent p.S94S 0.37 TCGA-EE-A3J7-06 3 134670529 134670529 C T EPHB1 Missense_Mutation p.S147F 0.39 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J7-06 3 138384011 138384011 G A PIK3CB Missense_Mutation p.R847C 0.58 deleterious(0.05) benign(0.025) TCGA-EE-A3J7-06 3 13916456 13916456 C T WNT7A Missense_Mutation p.E96K 0.90 tolerated(0.55) possibly_damaging(0.544) TCGA-EE-A3J7-06 3 140866004 140866004 G A SPSB4 Missense_Mutation p.D239N 0.52 tolerated(0.06) benign(0.085) TCGA-EE-A3J7-06 3 14508048 14508048 C T SLC6A6 Missense_Mutation p.P253S 0.83 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J7-06 3 148792061 148792061 C T HLTF Missense_Mutation p.R157K 0.48 tolerated(1) benign(0) TCGA-EE-A3J7-06 3 150416638 150416638 G A FAM194A Missense_Mutation p.P165S 0.43 tolerated(0.55) benign(0.102) TCGA-EE-A3J7-06 3 151056636 151056636 C T P2RY12 5'UTR 0.17 TCGA-EE-A3J7-06 3 151176362 151176362 G A IGSF10 Missense_Mutation p.R46W 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 3 158539796 158539796 C T MFSD1 Missense_Mutation p.P364L 0.43 tolerated(0.7) benign(0.002) TCGA-EE-A3J7-06 3 160395517 160395517 C T ARL14 Missense_Mutation p.P128L 0.44 deleterious(0.01) probably_damaging(0.952) TCGA-EE-A3J7-06 3 164786915 164786915 G A SI Silent p.F108F 0.47 TCGA-EE-A3J7-06 3 164906455 164906455 C T SLITRK3 Missense_Mutation p.G722S 0.62 tolerated(0.52) possibly_damaging(0.855) TCGA-EE-A3J7-06 3 167031894 167031894 G A ZBBX Missense_Mutation p.H429Y 0.26 tolerated(0.95) benign(0.015) TCGA-EE-A3J7-06 3 167240194 167240194 C T WDR49 Missense_Mutation p.E543K 0.35 tolerated(0.12) benign(0.014) TCGA-EE-A3J7-06 3 169540643 169540643 C T LRRIQ4 Nonsense_Mutation p.Q312* 0.45 TCGA-EE-A3J7-06 3 169572738 169572738 C T LRRC31 Missense_Mutation p.R285K 0.42 tolerated(0.13) benign(0.033) TCGA-EE-A3J7-06 3 169574228 169574228 A G LRRC31 Missense_Mutation p.V240A 0.15 tolerated(0.11) benign(0.001) TCGA-EE-A3J7-06 3 172353837 172353837 G A NCEH1 Missense_Mutation p.H200Y 0.44 tolerated(0.54) benign(0.001) TCGA-EE-A3J7-06 3 180372715 180372715 C T CCDC39 Silent p.T255T 0.21 TCGA-EE-A3J7-06 3 182683387 182683387 C T DCUN1D1 Missense_Mutation p.R53Q 0.08 tolerated(0.33) benign(0.006) TCGA-EE-A3J7-06 3 185198317 185198317 G A MAP3K13 Silent p.E933E 0.41 TCGA-EE-A3J7-06 3 185213024 185213024 C T TMEM41A Missense_Mutation p.C118Y 0.17 tolerated(1) benign(0.285) TCGA-EE-A3J7-06 3 189713187 189713187 G A LEPREL1 Silent p.F175F 0.39 TCGA-EE-A3J7-06 3 192516937 192516937 C T MB21D2 Silent p.V238V 0.36 TCGA-EE-A3J7-06 3 194118881 194118881 G A GP5 Missense_Mutation p.S44F 0.26 deleterious(0.01) benign(0.044) TCGA-EE-A3J7-06 3 196749882 196749882 C T MFI2 Missense_Mutation p.G197E 0.37 tolerated(0.21) benign(0.11) TCGA-EE-A3J7-06 3 196749883 196749883 C T MFI2 Missense_Mutation p.G197R 0.37 tolerated(0.36) benign(0.033) TCGA-EE-A3J7-06 3 196921404 196921404 G A DLG1 Silent p.I125I 0.31 TCGA-EE-A3J7-06 3 31617941 31617941 T C STT3B Missense_Mutation p.L123S 0.75 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3J7-06 3 33451019 33451019 A T UBP1 Silent p.V210V 0.92 TCGA-EE-A3J7-06 3 39373934 39373934 C T CCR8 Missense_Mutation p.L38F 0.92 tolerated(0.14) benign(0.056) TCGA-EE-A3J7-06 3 40293465 40293465 G A MYRIP Missense_Mutation p.R841K 0.24 tolerated_low_confidence(0.21) benign(0.015) TCGA-EE-A3J7-06 3 40468952 40468952 A C ENTPD3 Missense_Mutation p.K515Q 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A3J7-06 3 42906432 42906432 C T ACKR2 Silent p.I146I 0.86 TCGA-EE-A3J7-06 3 44490150 44490150 G A ZNF445 Missense_Mutation p.S338L 0.81 tolerated(0.07) benign(0.307) TCGA-EE-A3J7-06 3 44938250 44938250 C T TGM4 Missense_Mutation p.S200F 0.91 tolerated(0.69) benign(0.085) TCGA-EE-A3J7-06 3 46899902 46899902 C T MYL3 Silent p.E177E 0.93 TCGA-EE-A3J7-06 3 4777018 4777018 G A ITPR1 Missense_Mutation p.G1827R 0.85 deleterious(0) probably_damaging(0.921) TCGA-EE-A3J7-06 3 48453376 48453376 T A PLXNB1 Nonsense_Mutation p.K1715* 0.85 TCGA-EE-A3J7-06 3 48698213 48698213 G A CELSR3 Missense_Mutation p.R619C 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3J7-06 3 49877783 49877783 C T TRAIP Silent p.L243L 0.93 TCGA-EE-A3J7-06 3 52422287 52422287 C T DNAH1 Silent p.I3036I 0.21 TCGA-EE-A3J7-06 3 52883814 52883814 C T TMEM110 Missense_Mutation p.E141K 0.79 deleterious(0.01) possibly_damaging(0.586) TCGA-EE-A3J7-06 3 63601104 63601104 G A SYNPR Missense_Mutation p.D269N 0.84 tolerated(0.53) benign(0.034) TCGA-EE-A3J7-06 3 77623762 77623762 G A ROBO2 Missense_Mutation p.R711Q 0.83 tolerated(0.35) possibly_damaging(0.602) TCGA-EE-A3J7-06 3 97851967 97851967 C T OR5H1 Silent p.I142I 0.32 TCGA-EE-A3J7-06 3 98002537 98002537 C T OR5H2 Missense_Mutation p.S269F 0.40 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J7-06 3 99569252 99569252 C T FILIP1L Missense_Mutation p.R423K 0.14 tolerated(0.06) benign(0.04) TCGA-EE-A3J7-06 4 103517389 103517389 C T NFKB1 Silent p.T465T 0.52 TCGA-EE-A3J7-06 4 115997860 115997860 G A NDST4 Silent p.A111A 0.30 TCGA-EE-A3J7-06 4 119239661 119239661 G A PRSS12 Missense_Mutation p.P341L 0.32 deleterious(0.02) possibly_damaging(0.833) TCGA-EE-A3J7-06 4 119952529 119952529 G A SYNPO2 Missense_Mutation p.G867R 0.27 deleterious(0.01) possibly_damaging(0.586) TCGA-EE-A3J7-06 4 120981242 120981242 T C MAD2L1 3'UTR 0.68 TCGA-EE-A3J7-06 4 122301782 122301782 G A QRFPR Silent p.T7T 0.25 TCGA-EE-A3J7-06 4 123130369 123130369 C T KIAA1109 Missense_Mutation p.S603F 0.21 benign(0.396) TCGA-EE-A3J7-06 4 153691349 153691349 G A TIGD4 Nonsense_Mutation p.R270* 0.28 TCGA-EE-A3J7-06 4 155156591 155156591 C T DCHS2 Nonsense_Mutation p.W2616* 0.52 TCGA-EE-A3J7-06 4 155507613 155507613 G A FGA Missense_Mutation p.P323L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-EE-A3J7-06 4 158257886 158257886 G A GRIA2 Missense_Mutation p.D611N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J7-06 4 159568321 159568321 G A RXFP1 Missense_Mutation p.G575E 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3J7-06 4 164271684 164271684 G A NPY5R Missense_Mutation p.D87N 0.62 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 4 1670518 1670518 G A FAM53A 5'UTR 0.63 TCGA-EE-A3J7-06 4 177143511 177143511 C T ASB5 Missense_Mutation p.G113R 0.62 tolerated(0.09) probably_damaging(0.978) TCGA-EE-A3J7-06 4 183650253 183650253 A C TENM3 Missense_Mutation p.K835T 0.55 deleterious(0.03) possibly_damaging(0.727) TCGA-EE-A3J7-06 4 183710262 183710262 T A TENM3 Missense_Mutation p.L1774H 0.65 deleterious(0) possibly_damaging(0.807) TCGA-EE-A3J7-06 4 184432007 184432007 C T ING2 Missense_Mutation p.P249S 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 4 20544117 20544117 G A SLIT2 Missense_Mutation p.G715E 0.59 tolerated(0.09) probably_damaging(1) TCGA-EE-A3J7-06 4 22749088 22749088 C T GBA3 Silent p.T152T 0.68 TCGA-EE-A3J7-06 4 22749597 22749597 G A GBA3 Missense_Mutation p.G322E 0.29 tolerated(0.45) benign(0.002) TCGA-EE-A3J7-06 4 24875320 24875320 G A CCDC149 Missense_Mutation p.P83S 0.25 tolerated(0.09) possibly_damaging(0.835) TCGA-EE-A3J7-06 4 2943344 2943344 G A NOP14 Missense_Mutation p.H722Y 0.32 deleterious(0.04) possibly_damaging(0.864) TCGA-EE-A3J7-06 4 36230906 36230906 A C ARAP2 Missense_Mutation p.L68W 0.26 deleterious(0) possibly_damaging(0.765) TCGA-EE-A3J7-06 4 38775153 38775153 C T TLR10 Missense_Mutation p.E687K 0.64 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 4 39436032 39436032 G A KLB Missense_Mutation p.G343E 0.37 tolerated(0.37) benign(0.002) TCGA-EE-A3J7-06 4 40946981 40946981 C T APBB2 Silent p.T315T 0.56 TCGA-EE-A3J7-06 4 44626661 44626661 G A YIPF7 Missense_Mutation p.P213S 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.23 tolerated(0.48) benign(0.199) TCGA-EE-A3J7-06 4 52861097 52861097 A C LRRC66 Missense_Mutation p.C697W 0.26 tolerated(0.17) benign(0.428) TCGA-EE-A3J7-06 4 5806560 5806560 C T EVC Silent p.V851V 0.30 TCGA-EE-A3J7-06 4 6081970 6081970 C T JAKMIP1 Missense_Mutation p.D391N 0.18 deleterious(0) benign(0.208) TCGA-EE-A3J7-06 4 654258 654258 G A PDE6B Silent p.K490K 0.15 TCGA-EE-A3J7-06 4 658005 658005 C T PDE6B Silent p.I708I 0.32 TCGA-EE-A3J7-06 4 70071286 70071286 C T UGT2B11 Splice_Site p.X335_splice 0.19 TCGA-EE-A3J7-06 4 71472162 71472162 C T AMBN Silent p.L353L 0.39 TCGA-EE-A3J7-06 4 79420961 79420961 A C FRAS1 Missense_Mutation p.I3068L 0.59 benign(0.06) TCGA-EE-A3J7-06 4 81967395 81967395 G A BMP3 Missense_Mutation p.D274N 0.59 tolerated(0.1) benign(0.007) TCGA-EE-A3J7-06 4 83349475 83349475 C A HNRNPDL Nonsense_Mutation p.G190* 0.05 TCGA-EE-A3J7-06 4 83375960 83375960 G A ENOPH1 Missense_Mutation p.A159T 0.61 deleterious(0) probably_damaging(0.982) TCGA-EE-A3J7-06 4 83800043 83800043 G A SEC31A Missense_Mutation p.S81F 0.24 deleterious(0) benign(0.372) TCGA-EE-A3J7-06 4 84377277 84377277 T C MRPS18C Missense_Mutation p.L16S 0.14 deleterious(0.03) benign(0.069) TCGA-EE-A3J7-06 4 94159576 94159576 C T GRID2 Missense_Mutation p.P394S 0.51 tolerated(0.91) benign(0.264) TCGA-EE-A3J7-06 4 954932 954932 G A DGKQ Nonsense_Mutation p.R878* 0.48 TCGA-EE-A3J7-06 4 985081 985081 C T SLC26A1 Silent p.V137V 0.60 TCGA-EE-A3J7-06 4 9909970 9909970 C T SLC2A9 Splice_Site p.X335_splice 0.29 TCGA-EE-A3J7-06 5 111530276 111530276 T C EPB41L4A Silent p.K497K 0.48 TCGA-EE-A3J7-06 5 125887819 125887819 C T ALDH7A1 Missense_Mutation p.R404H 0.35 tolerated(0.05) benign(0.014) TCGA-EE-A3J7-06 5 127522347 127522347 T G SLC12A2 3'UTR 0.91 TCGA-EE-A3J7-06 5 128359348 128359348 T C SLC27A6 Silent p.F400F 0.50 TCGA-EE-A3J7-06 5 132018195 132018195 G A IL4 Silent p.K126K 0.79 TCGA-EE-A3J7-06 5 13708340 13708340 G A DNAH5 Silent p.T4410T 0.11 TCGA-EE-A3J7-06 5 13762910 13762910 C T DNAH5 Missense_Mutation p.G3401E 0.09 probably_damaging(0.982) TCGA-EE-A3J7-06 5 137756403 137756403 T G KDM3B Missense_Mutation p.S1242A 0.85 tolerated(0.18) benign(0.028) TCGA-EE-A3J7-06 5 13776634 13776634 C T DNAH5 Missense_Mutation p.R3096Q 0.10 possibly_damaging(0.553) TCGA-EE-A3J7-06 5 13824344 13824344 G A DNAH5 Silent p.V2181V 0.79 TCGA-EE-A3J7-06 5 13883157 13883157 G A DNAH5 Silent p.F1010F 0.05 TCGA-EE-A3J7-06 5 140165896 140165896 G A PCDHA1 Silent p.G7G 0.86 TCGA-EE-A3J7-06 5 140188633 140188633 C T PCDHA4 Missense_Mutation p.P621S 0.84 deleterious_low_confidence(0.01) benign(0.063) TCGA-EE-A3J7-06 5 140189164 140189164 G T PCDHA4 Intron 0.80 TCGA-EE-A3J7-06 5 140228279 140228279 G A PCDHA9 Missense_Mutation p.D67N 0.86 deleterious_low_confidence(0) benign(0.128) TCGA-EE-A3J7-06 5 140554378 140554378 C T PCDHB7 Silent p.A654A 0.79 TCGA-EE-A3J7-06 5 140588665 140588665 G A PCDHB12 Silent p.R62R 0.82 TCGA-EE-A3J7-06 5 140712259 140712259 G A PCDHGA1 Missense_Mutation p.D670N 0.87 deleterious_low_confidence(0.01) benign(0.109) TCGA-EE-A3J7-06 5 140730737 140730737 G A PCDHGB1 Missense_Mutation p.D304N 0.92 deleterious(0.02) probably_damaging(1) TCGA-EE-A3J7-06 5 141993609 141993609 G A FGF1 Silent p.L28L 0.73 TCGA-EE-A3J7-06 5 143853322 143853322 C T KCTD16 Missense_Mutation p.S311F 0.87 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J7-06 5 147856294 147856294 C T HTR4 3'Flank 0.33 TCGA-EE-A3J7-06 5 150646406 150646406 C T GM2A Missense_Mutation p.P120S 0.79 deleterious(0) probably_damaging(0.977) TCGA-EE-A3J7-06 5 153765888 153765888 C A GALNT10 Silent p.A318A 0.90 TCGA-EE-A3J7-06 5 167420156 167420156 C T TENM2 Silent p.L385L 0.34 TCGA-EE-A3J7-06 5 169021206 169021206 C T SPDL1 Missense_Mutation p.L197F 0.32 tolerated(0.42) benign(0.048) TCGA-EE-A3J7-06 5 169144387 169144387 G A DOCK2 Splice_Site p.X678_splice 0.80 TCGA-EE-A3J7-06 5 169482306 169482306 C T DOCK2 Intron 0.86 TCGA-EE-A3J7-06 5 172659724 172659724 G A NKX2-5 Missense_Mutation p.P275S 0.33 tolerated(0.12) possibly_damaging(0.857) TCGA-EE-A3J7-06 5 173378897 173378897 G A CPEB4 Missense_Mutation p.R579Q 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-EE-A3J7-06 5 176517623 176517623 C T FGFR4 Silent p.I108I 0.77 TCGA-EE-A3J7-06 5 176863138 176863138 C T GRK6 Silent p.L374L 0.92 TCGA-EE-A3J7-06 5 177059471 177059471 G A RP11-1277A3.2 Intron 0.87 TCGA-EE-A3J7-06 5 178540923 178540923 C T ADAMTS2 Missense_Mutation p.R1194K 0.84 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EE-A3J7-06 5 35957468 35957468 G A UGT3A1 Silent p.A299A 0.76 TCGA-EE-A3J7-06 5 35957469 35957469 G A UGT3A1 Missense_Mutation p.A299V 0.78 tolerated(0.06) possibly_damaging(0.644) TCGA-EE-A3J7-06 5 36143317 36143317 G A LMBRD2 Silent p.C45C 0.79 TCGA-EE-A3J7-06 5 38418314 38418314 G A EGFLAM Missense_Mutation p.M547I 0.72 tolerated(0.2) benign(0.005) TCGA-EE-A3J7-06 5 38481998 38481998 C T LIFR Missense_Mutation p.G998E 0.41 tolerated(0.49) benign(0.118) TCGA-EE-A3J7-06 5 41064601 41064601 C T MROH2B Missense_Mutation p.E145K 0.81 deleterious(0.03) benign(0.287) TCGA-EE-A3J7-06 5 42808345 42808345 T C SEPP1 Silent p.R37R 0.22 TCGA-EE-A3J7-06 5 43246078 43246078 G - NIM1K Frame_Shift_Del p.K69Nfs*3 0.10 TCGA-EE-A3J7-06 5 43280221 43280221 C T NIM1K Missense_Mutation p.P234L 0.39 deleterious(0.03) probably_damaging(0.975) TCGA-EE-A3J7-06 5 44310583 44310583 G A FGF10 Silent p.A125A 0.78 TCGA-EE-A3J7-06 5 44310584 44310584 G A FGF10 Missense_Mutation p.A125V 0.78 deleterious(0.01) benign(0.171) TCGA-EE-A3J7-06 5 45262173 45262173 G A HCN1 Silent p.L841L 0.13 TCGA-EE-A3J7-06 5 484712 484712 G A SLC9A3 Silent p.I285I 0.08 TCGA-EE-A3J7-06 5 55253047 55253047 A C IL6ST Missense_Mutation p.L349R 0.79 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 5 60187871 60187871 G A ERCC8 Intron 0.33 TCGA-EE-A3J7-06 5 66461119 66461119 C G MAST4 Missense_Mutation p.P2038A 0.40 benign(0.008) TCGA-EE-A3J7-06 5 73048957 73048957 G T ARHGEF28 Missense_Mutation p.E135D 0.14 tolerated(0.85) benign(0.003) TCGA-EE-A3J7-06 5 7895940 7895940 C T MTRR Missense_Mutation p.P578S 0.86 deleterious(0) possibly_damaging(0.71) TCGA-EE-A3J7-06 5 79033568 79033568 G A CMYA5 Missense_Mutation p.D2994N 0.93 benign(0.001) TCGA-EE-A3J7-06 5 79354082 79354082 C T THBS4 Silent p.A198A 0.69 TCGA-EE-A3J7-06 5 80626239 80626239 C A ACOT12 Missense_Mutation p.D548Y 0.95 deleterious_low_confidence(0.02) benign(0.169) TCGA-EE-A3J7-06 5 82940460 82940460 C T HAPLN1 Missense_Mutation p.R166Q 0.76 tolerated(0.28) benign(0.05) TCGA-EE-A3J7-06 5 94027898 94027898 C G ANKRD32 Missense_Mutation p.P878A 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 5 94027899 94027899 C T ANKRD32 Missense_Mutation p.P878L 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 6 100841663 100841663 C T SIM1 Missense_Mutation p.D424N 0.84 deleterious(0.03) benign(0.22) TCGA-EE-A3J7-06 6 108492756 108492756 C T NR2E1 Silent p.F40F 0.89 TCGA-EE-A3J7-06 6 108985241 108985241 C T FOXO3 Missense_Mutation p.S402L 0.87 tolerated(0.35) benign(0.029) TCGA-EE-A3J7-06 6 110424719 110424719 A T WASF1 Missense_Mutation p.L252H 0.84 tolerated(0.16) unknown(0) TCGA-EE-A3J7-06 6 110424720 110424720 G A WASF1 Missense_Mutation p.L252F 0.86 tolerated(0.11) unknown(0) TCGA-EE-A3J7-06 6 112455697 112455697 C T LAMA4 Missense_Mutation p.G1177R 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 6 114379321 114379321 C T HS3ST5 Silent p.L47L 0.48 TCGA-EE-A3J7-06 6 11735908 11735908 G A ADTRP Silent p.F151F 0.52 TCGA-EE-A3J7-06 6 117710685 117710685 G A ROS1 Silent p.I529I 0.93 TCGA-EE-A3J7-06 6 117715387 117715387 A T ROS1 Missense_Mutation p.L368I 0.78 tolerated(0.53) benign(0.007) TCGA-EE-A3J7-06 6 128135017 128135017 C T THEMIS Missense_Mutation p.D257N 0.94 tolerated(0.11) possibly_damaging(0.69) TCGA-EE-A3J7-06 6 129722452 129722452 C T LAMA2 Silent p.N1843N 0.28 TCGA-EE-A3J7-06 6 131996253 131996253 G A ENPP3 Missense_Mutation p.A266T 0.88 tolerated(0.12) benign(0.364) TCGA-EE-A3J7-06 6 132643979 132643979 G A MOXD1 Missense_Mutation p.H382Y 0.94 deleterious(0.02) probably_damaging(0.952) TCGA-EE-A3J7-06 6 132910232 132910232 T A TAAR5 Missense_Mutation p.K198N 0.88 deleterious(0) probably_damaging(0.957) TCGA-EE-A3J7-06 6 13365276 13365276 G A GFOD1 Missense_Mutation p.P291L 0.23 tolerated(0.17) benign(0.009) TCGA-EE-A3J7-06 6 148855983 148855983 C T SASH1 Missense_Mutation p.P681S 0.78 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A3J7-06 6 160969557 160969557 G A LPA Missense_Mutation p.P1703L 0.81 deleterious(0.04) possibly_damaging(0.844) TCGA-EE-A3J7-06 6 161528978 161528978 G A MAP3K4 Missense_Mutation p.G1366R 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 6 168352612 168352612 C T MLLT4 Silent p.D1519D 0.33 TCGA-EE-A3J7-06 6 24596496 24596496 C T KIAA0319 Missense_Mutation p.D136N 0.33 deleterious(0.03) possibly_damaging(0.535) TCGA-EE-A3J7-06 6 25913647 25913647 G A SLC17A2 Missense_Mutation p.S396F 0.57 deleterious(0) probably_damaging(0.919) TCGA-EE-A3J7-06 6 26156897 26156897 G A HIST1H1E Silent p.L93L 0.23 TCGA-EE-A3J7-06 6 26460004 26460004 C T BTN2A1 Silent p.Y126Y 0.38 TCGA-EE-A3J7-06 6 28501757 28501757 C T GPX5 Missense_Mutation p.S160F 0.29 deleterious(0.03) possibly_damaging(0.543) TCGA-EE-A3J7-06 6 29524120 29524120 A T UBD Missense_Mutation p.V12D 0.50 deleterious(0) probably_damaging(0.991) TCGA-EE-A3J7-06 6 30124759 30124759 G A TRIM10 Silent p.P284P 0.37 TCGA-EE-A3J7-06 6 30136262 30136262 G A TRIM15 Silent p.K221K 0.38 TCGA-EE-A3J7-06 6 30883522 30883522 G A VARS2 Splice_Site p.X159_splice 0.47 TCGA-EE-A3J7-06 6 31550142 31550142 G A LTB Missense_Mutation p.S18F 0.30 tolerated(0.67) unknown(0) TCGA-EE-A3J7-06 6 31592981 31592981 C T PRRC2A Missense_Mutation p.S166F 0.49 possibly_damaging(0.472) TCGA-EE-A3J7-06 6 31594939 31594940 CC T PRRC2A Frame_Shift_Del p.A420Pfs*151 0.30 TCGA-EE-A3J7-06 6 31599352 31599352 C T PRRC2A Missense_Mutation p.P968S 0.53 unknown(0) TCGA-EE-A3J7-06 6 31655430 31655430 G A ABHD16A Missense_Mutation p.P512L 0.05 deleterious(0) possibly_damaging(0.702) TCGA-EE-A3J7-06 6 31675750 31675750 G A LY6G6F Missense_Mutation p.G162E 0.52 deleterious(0.05) probably_damaging(0.972) TCGA-EE-A3J7-06 6 31694940 31694940 C T DDAH2 3'UTR 0.24 TCGA-EE-A3J7-06 6 32154610 32154610 C T PBX2 Missense_Mutation p.D365N 0.52 deleterious(0.03) possibly_damaging(0.576) TCGA-EE-A3J7-06 6 32260813 32260813 G A C6orf10 Missense_Mutation p.S546L 0.39 tolerated_low_confidence(0.21) benign(0.011) TCGA-EE-A3J7-06 6 32629825 32629825 C T HLA-DQB1 Missense_Mutation p.E194K 0.59 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 6 32847454 32847454 G A PPP1R2P1 RNA 0.41 TCGA-EE-A3J7-06 6 32917094 32917094 G A HLA-DMA Silent p.I245I 0.49 TCGA-EE-A3J7-06 6 33036535 33036535 G A HLA-DPA1 Silent p.L225L 0.61 TCGA-EE-A3J7-06 6 33283498 33283498 G A ZBTB22 Missense_Mutation p.S399L 0.34 deleterious(0.04) benign(0.026) TCGA-EE-A3J7-06 6 33290742 33290742 G A DAXX 5'UTR 0.59 TCGA-EE-A3J7-06 6 33423088 33423088 C T ZBTB9 Missense_Mutation p.P71S 0.21 deleterious(0) probably_damaging(0.963) TCGA-EE-A3J7-06 6 33423089 33423089 C T ZBTB9 Missense_Mutation p.P71L 0.21 deleterious(0) probably_damaging(0.982) TCGA-EE-A3J7-06 6 348175 348175 G A DUSP22 Silent p.E112E 0.24 TCGA-EE-A3J7-06 6 348176 348176 G A DUSP22 Missense_Mutation p.D113N 0.24 deleterious(0.01) possibly_damaging(0.631) TCGA-EE-A3J7-06 6 35216499 35216499 G A SCUBE3 3'UTR 0.48 TCGA-EE-A3J7-06 6 35454395 35454395 G A TEAD3 Silent p.A15A 0.59 TCGA-EE-A3J7-06 6 35547904 35547904 G A FKBP5 Missense_Mutation p.S312F 0.62 tolerated(0.13) benign(0.072) TCGA-EE-A3J7-06 6 35704998 35704998 G A ARMC12 Missense_Mutation p.G38D 0.51 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J7-06 6 36104507 36104507 C T MAPK13 Silent p.A190A 0.62 TCGA-EE-A3J7-06 6 36465583 36465583 A - STK38 Frame_Shift_Del p.F382Lfs*70 0.15 TCGA-EE-A3J7-06 6 37622638 37622638 G A MDGA1 Missense_Mutation p.S217F 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J7-06 6 37626042 37626042 A T MDGA1 Missense_Mutation p.S121T 0.52 deleterious(0.01) possibly_damaging(0.548) TCGA-EE-A3J7-06 6 38998082 38998082 T G DNAH8 Missense_Mutation p.F4463V 0.34 benign(0.41) TCGA-EE-A3J7-06 6 39033567 39033567 G A GLP1R Missense_Mutation p.D122N 0.36 tolerated(0.64) benign(0.005) TCGA-EE-A3J7-06 6 43098319 43098319 C T PTK7 Silent p.F252F 0.62 TCGA-EE-A3J7-06 6 44147811 44147811 G A CAPN11 Silent p.G517G 0.51 TCGA-EE-A3J7-06 6 46658651 46658651 C T TDRD6 Missense_Mutation p.S929L 0.24 deleterious(0.01) possibly_damaging(0.542) TCGA-EE-A3J7-06 6 49754646 49754646 G A PGK2 Silent p.L85L 0.58 TCGA-EE-A3J7-06 6 50810880 50810880 C T TFAP2B Silent p.I386I 0.51 TCGA-EE-A3J7-06 6 55638907 55638907 T G BMP5 Missense_Mutation p.N323H 0.36 tolerated(0.06) benign(0.003) TCGA-EE-A3J7-06 6 55638908 55638908 T A BMP5 Missense_Mutation p.K322N 0.37 deleterious(0) possibly_damaging(0.67) TCGA-EE-A3J7-06 6 6167790 6167790 C T F13A1 Silent p.A603A 0.21 TCGA-EE-A3J7-06 6 64394104 64394104 G A PHF3 Missense_Mutation p.A161T 0.22 tolerated(0.24) benign(0.004) TCGA-EE-A3J7-06 6 64423251 64423251 T - PHF3 Frame_Shift_Del p.Y1924Ifs*7 0.43 TCGA-EE-A3J7-06 6 73023356 73023356 C T RIMS1 Missense_Mutation p.R1371C 0.37 deleterious(0) possibly_damaging(0.656) TCGA-EE-A3J7-06 6 7585571 7585571 G A DSP Silent p.Q2692Q 0.35 TCGA-EE-A3J7-06 6 75893013 75893013 G A COL12A1 Silent p.I548I 0.83 TCGA-EE-A3J7-06 6 90661201 90661201 G A BACH2 Silent p.P208P 0.28 TCGA-EE-A3J7-06 6 99883615 99883615 G A USP45 Missense_Mutation p.L808F 0.85 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 7 100087112 100087112 C T NYAP1 Silent p.L590L 0.63 TCGA-EE-A3J7-06 7 100356181 100356181 G A ZAN Missense_Mutation p.G1160E 0.62 unknown(0) TCGA-EE-A3J7-06 7 101957830 101957830 G A SH2B2 Missense_Mutation p.V492M 0.18 deleterious(0) probably_damaging(0.976) TCGA-EE-A3J7-06 7 102453803 102453803 C T FBXL13 Missense_Mutation p.D732N 0.37 deleterious_low_confidence(0.04) benign(0) TCGA-EE-A3J7-06 7 103322676 103322676 A T RELN Nonsense_Mutation p.Y392* 0.63 TCGA-EE-A3J7-06 7 105603726 105603726 C T CDHR3 5'UTR 0.55 TCGA-EE-A3J7-06 7 106508615 106508615 G A PIK3CG Silent p.T203T 0.18 TCGA-EE-A3J7-06 7 107703395 107703395 G A LAMB4 Missense_Mutation p.P1036S 0.35 tolerated(0.82) benign(0.018) TCGA-EE-A3J7-06 7 107703396 107703396 G A LAMB4 Silent p.P1035P 0.36 TCGA-EE-A3J7-06 7 117175431 117175431 C T CFTR Nonsense_Mutation p.Q237* 0.53 TCGA-EE-A3J7-06 7 120911459 120911459 G A CPED1 Missense_Mutation p.G948E 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 7 120935766 120935766 C T CPED1 3'UTR 0.25 TCGA-EE-A3J7-06 7 126173060 126173060 G A GRM8 Silent p.I792I 0.47 TCGA-EE-A3J7-06 7 126173756 126173756 C T GRM8 Silent p.Q560Q 0.23 TCGA-EE-A3J7-06 7 128851509 128851509 G A SMO Missense_Mutation p.A612T 0.57 tolerated(0.49) benign(0.09) TCGA-EE-A3J7-06 7 129103954 129103954 C T STRIP2 Silent p.L541L 0.37 TCGA-EE-A3J7-06 7 131865363 131865363 G A PLXNA4 Silent p.I1207I 0.46 TCGA-EE-A3J7-06 7 131887509 131887509 C T PLXNA4 Missense_Mutation p.G828S 0.59 tolerated(1) benign(0.034) TCGA-EE-A3J7-06 7 135636300 135636300 G A MTPN Silent p.L51L 0.33 TCGA-EE-A3J7-06 7 137773395 137773395 G A AKR1D1 Missense_Mutation p.G48R 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A3J7-06 7 141419018 141419018 G A WEE2 Missense_Mutation p.M244I 0.25 tolerated(0.07) benign(0.158) TCGA-EE-A3J7-06 7 141619542 141619542 C T OR9A4 Silent p.I289I 0.05 TCGA-EE-A3J7-06 7 141768492 141768492 G A MGAM Intron 0.30 TCGA-EE-A3J7-06 7 142143833 142143833 G A TRBV6-7 Nonsense_Mutation p.R55* 0.46 TCGA-EE-A3J7-06 7 142479926 142479926 G A PRSS3P2 RNA 0.52 TCGA-EE-A3J7-06 7 143053639 143053639 G A FAM131B 3'UTR 0.49 TCGA-EE-A3J7-06 7 143054029 143054029 C T FAM131B Missense_Mutation p.E233K 0.57 tolerated(0.19) probably_damaging(0.94) TCGA-EE-A3J7-06 7 143632953 143632953 C T OR2F2 Missense_Mutation p.P210S 0.39 deleterious(0) probably_damaging(0.951) TCGA-EE-A3J7-06 7 143632954 143632954 C T OR2F2 Missense_Mutation p.P210L 0.39 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 7 143701590 143701590 C T OR6B1 Silent p.S167S 0.44 TCGA-EE-A3J7-06 7 144288563 144288563 G A TPK1 Missense_Mutation p.P152S 0.49 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J7-06 7 1484890 1484890 G A MICALL2 Silent p.S272S 0.55 TCGA-EE-A3J7-06 7 150325563 150325563 C T GIMAP6 Silent p.L41L 0.33 TCGA-EE-A3J7-06 7 150554823 150554823 C T AOC1 Missense_Mutation p.P422L 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3J7-06 7 150698342 150698342 C G NOS3 Missense_Mutation p.D419E 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3J7-06 7 150698465 150698465 C T NOS3 Silent p.F460F 0.52 TCGA-EE-A3J7-06 7 150745996 150745996 G A ASIC3 Silent p.E8E 0.25 TCGA-EE-A3J7-06 7 150878460 150878460 G T ASB10 Silent p.R224R 0.30 TCGA-EE-A3J7-06 7 154667733 154667733 C T DPP6 Silent p.F667F 0.57 TCGA-EE-A3J7-06 7 156476751 156476751 A G LMBR1 3'UTR 0.54 TCGA-EE-A3J7-06 7 16644417 16644417 A C ANKMY2 Missense_Mutation p.F314V 0.29 deleterious(0.01) possibly_damaging(0.564) TCGA-EE-A3J7-06 7 20199241 20199241 T C MACC1 Missense_Mutation p.E248G 0.50 deleterious(0) possibly_damaging(0.791) TCGA-EE-A3J7-06 7 21628998 21628998 C T DNAH11 Missense_Mutation p.L716F 0.33 benign(0.14) TCGA-EE-A3J7-06 7 23792410 23792410 G A STK31 Missense_Mutation p.M364I 0.21 tolerated(0.26) benign(0.025) TCGA-EE-A3J7-06 7 2618122 2618122 G - IQCE Frame_Shift_Del p.V198Ffs*18 0.29 TCGA-EE-A3J7-06 7 27149908 27149908 C T HOXA3 Missense_Mutation p.A118T 0.26 tolerated(0.69) benign(0) TCGA-EE-A3J7-06 7 2752276 2752276 G A AMZ1 Missense_Mutation p.E421K 0.25 deleterious_low_confidence(0.01) benign(0.399) TCGA-EE-A3J7-06 7 28547322 28547322 C T CREB5 Silent p.F86F 0.53 TCGA-EE-A3J7-06 7 36462335 36462335 T C ANLN Missense_Mutation p.M798T 0.38 tolerated(0.24) benign(0.002) TCGA-EE-A3J7-06 7 36763691 36763691 G A AOAH Silent p.S21S 0.58 TCGA-EE-A3J7-06 7 37264484 37264484 C T ELMO1 Missense_Mutation p.G234E 0.26 tolerated(1) possibly_damaging(0.507) TCGA-EE-A3J7-06 7 38725142 38725142 C T FAM183B 3'UTR 0.27 TCGA-EE-A3J7-06 7 3991526 3991526 G T SDK1 Missense_Mutation p.R375M 0.20 tolerated(0.12) benign(0.102) TCGA-EE-A3J7-06 7 41729922 41729922 C T INHBA Missense_Mutation p.E203K 0.35 tolerated(0.31) possibly_damaging(0.497) TCGA-EE-A3J7-06 7 4215446 4215446 C T SDK1 Missense_Mutation p.S1659L 0.36 tolerated(1) benign(0.001) TCGA-EE-A3J7-06 7 43843289 43843289 G T BLVRA Nonsense_Mutation p.E159* 0.28 TCGA-EE-A3J7-06 7 43978038 43978038 C T UBE2D4 Silent p.T11T 0.22 TCGA-EE-A3J7-06 7 44281867 44281867 G A CAMK2B Missense_Mutation p.P257S 0.45 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A3J7-06 7 4780636 4780636 C T FOXK1 Missense_Mutation p.S243F 0.71 deleterious(0.02) possibly_damaging(0.701) TCGA-EE-A3J7-06 7 48026965 48026965 G A SUN3 Nonsense_Mutation p.R346* 0.27 TCGA-EE-A3J7-06 7 51258636 51258636 C T COBL Missense_Mutation p.R199K 0.56 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 7 64437962 64437962 G A ZNF117 3'UTR 0.27 TCGA-EE-A3J7-06 7 6476070 6476070 C T DAGLB Silent p.L114L 0.51 TCGA-EE-A3J7-06 7 70853291 70853291 C T WBSCR17 Silent p.L165L 0.56 TCGA-EE-A3J7-06 7 71134991 71134991 G A WBSCR17 Missense_Mutation p.R434K 0.28 deleterious(0.03) possibly_damaging(0.899) TCGA-EE-A3J7-06 7 72744236 72744236 G A FKBP6 Missense_Mutation p.A117T 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 7 7491976 7491976 C T COL28A1 Missense_Mutation p.V495M 0.56 tolerated(0.25) benign(0.102) TCGA-EE-A3J7-06 7 75048688 75048688 C T POM121C Silent p.A927A 0.35 TCGA-EE-A3J7-06 7 76112102 76112102 G T DTX2 Silent p.V182V 0.35 TCGA-EE-A3J7-06 7 76885817 76885817 C T CCDC146 Silent p.V225V 0.38 TCGA-EE-A3J7-06 7 81579779 81579779 G A CACNA2D1 Silent p.L1069L 0.45 TCGA-EE-A3J7-06 7 92761880 92761880 C T SAMD9L Silent p.L1135L 0.36 TCGA-EE-A3J7-06 7 94049585 94049585 C G COL1A2 Missense_Mutation p.P707R 0.23 unknown(0) TCGA-EE-A3J7-06 7 98559063 98559063 C T TRRAP Silent p.L2216L 0.31 TCGA-EE-A3J7-06 7 99445814 99445814 G A CYP3A43 Missense_Mutation p.G153E 0.58 deleterious(0.02) probably_damaging(0.965) TCGA-EE-A3J7-06 7 99755311 99755311 C T C7orf43 Silent p.Q194Q 0.17 TCGA-EE-A3J7-06 8 100123389 100123389 G A VPS13B Missense_Mutation p.R215Q 0.19 deleterious(0) possibly_damaging(0.602) TCGA-EE-A3J7-06 8 103271215 103271215 G T UBR5 Nonsense_Mutation p.S2700* 0.22 TCGA-EE-A3J7-06 8 103271216 103271216 A T UBR5 Missense_Mutation p.S2700T 0.24 tolerated(0.11) possibly_damaging(0.891) TCGA-EE-A3J7-06 8 10469316 10469316 C T RP1L1 Silent p.G764G 0.48 TCGA-EE-A3J7-06 8 10557855 10557855 G A C8orf74 Silent p.Q253Q 0.27 TCGA-EE-A3J7-06 8 10583204 10583204 G A SOX7 3'UTR 0.13 TCGA-EE-A3J7-06 8 110460542 110460542 C T PKHD1L1 Missense_Mutation p.H1983Y 0.40 tolerated(0.09) possibly_damaging(0.511) TCGA-EE-A3J7-06 8 12973120 12973120 G A DLC1 Silent p.F465F 0.45 TCGA-EE-A3J7-06 8 133196544 133196544 C T KCNQ3 Missense_Mutation p.R183Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J7-06 8 133627289 133627289 G A LRRC6 Silent p.V323V 0.38 TCGA-EE-A3J7-06 8 133726259 133726259 T C TMEM71 Missense_Mutation p.K266R 0.26 deleterious(0.04) probably_damaging(0.969) TCGA-EE-A3J7-06 8 139164396 139164396 G A FAM135B Silent p.P774P 0.41 TCGA-EE-A3J7-06 8 140744261 140744261 G A TRAPPC9 Silent p.T1178T 0.18 TCGA-EE-A3J7-06 8 141525238 141525238 G A CHRAC1 Silent p.K96K 0.38 TCGA-EE-A3J7-06 8 143960841 143960841 G A CYP11B1 Intron 0.53 TCGA-EE-A3J7-06 8 144697044 144697044 G A TSTA3 Silent p.A101A 0.37 TCGA-EE-A3J7-06 8 144998534 144998534 C T PLEC Missense_Mutation p.A1992T 0.08 unknown(0) TCGA-EE-A3J7-06 8 145003384 145003384 C T PLEC Silent p.K1186K 0.19 TCGA-EE-A3J7-06 8 145724400 145724400 G A PPP1R16A Silent p.A144A 0.09 TCGA-EE-A3J7-06 8 18257755 18257755 C T NAT2 Missense_Mutation p.T81I 0.18 deleterious(0.04) possibly_damaging(0.565) TCGA-EE-A3J7-06 8 18257756 18257756 A T NAT2 Silent p.T81T 0.18 TCGA-EE-A3J7-06 8 18729967 18729967 G A PSD3 Missense_Mutation p.S136L 0.46 deleterious_low_confidence(0) benign(0.367) TCGA-EE-A3J7-06 8 20022406 20022406 G A SLC18A1 Missense_Mutation p.T330I 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 8 2071188 2071188 G A MYOM2 Missense_Mutation p.E1173K 0.42 tolerated(0.07) benign(0.006) TCGA-EE-A3J7-06 8 21846589 21846589 C T XPO7 Silent p.S621S 0.34 TCGA-EE-A3J7-06 8 22078975 22078975 G A PHYHIP Missense_Mutation p.S295F 0.43 deleterious(0.05) possibly_damaging(0.712) TCGA-EE-A3J7-06 8 24188792 24188792 G A ADAM28 Silent p.G411G 0.39 TCGA-EE-A3J7-06 8 24256408 24256408 C T ADAMDEC1 Nonsense_Mutation p.Q262* 0.36 TCGA-EE-A3J7-06 8 24344791 24344791 C T ADAM7 Missense_Mutation p.T351I 0.29 deleterious(0.05) probably_damaging(0.966) TCGA-EE-A3J7-06 8 24359083 24359083 C T ADAM7 Silent p.F734F 0.49 TCGA-EE-A3J7-06 8 26218498 26218498 C T PPP2R2A Silent p.V166V 0.42 TCGA-EE-A3J7-06 8 27309061 27309061 C T PTK2B Intron 0.30 TCGA-EE-A3J7-06 8 27324800 27324800 G A CHRNA2 Missense_Mutation p.S132F 0.33 tolerated(0.85) probably_damaging(1) TCGA-EE-A3J7-06 8 2831998 2831998 C T CSMD1 Nonsense_Mutation p.W2905* 0.39 TCGA-EE-A3J7-06 8 3267006 3267006 C T CSMD1 Silent p.G561G 0.41 TCGA-EE-A3J7-06 8 38853913 38853913 G A TM2D2 Nonsense_Mutation p.Q16* 0.41 TCGA-EE-A3J7-06 8 41122769 41122769 C T SFRP1 Missense_Mutation p.D288N 0.20 deleterious(0.03) benign(0.167) TCGA-EE-A3J7-06 8 41551479 41551479 C T ANK1 Missense_Mutation p.D1198N 0.38 deleterious(0.02) benign(0.11) TCGA-EE-A3J7-06 8 52252198 52252198 C T PXDNL Missense_Mutation p.A1378T 0.48 tolerated(0.52) benign(0.002) TCGA-EE-A3J7-06 8 52252245 52252245 G A PXDNL Missense_Mutation p.S1362F 0.39 tolerated(0.11) benign(0.001) TCGA-EE-A3J7-06 8 52359642 52359642 G A PXDNL Nonsense_Mutation p.Q483* 0.41 TCGA-EE-A3J7-06 8 55533636 55533636 G A RP1 Missense_Mutation p.R37Q 0.50 deleterious(0) possibly_damaging(0.893) TCGA-EE-A3J7-06 8 67706033 67706033 C T SGK3 Missense_Mutation p.S21F 0.45 tolerated_low_confidence(0.56) benign(0.303) TCGA-EE-A3J7-06 8 68950458 68950458 C T PREX2 Missense_Mutation p.S257F 0.24 deleterious(0) benign(0.121) TCGA-EE-A3J7-06 8 79514046 79514046 C T PKIA Missense_Mutation p.S74F 0.39 deleterious(0.04) benign(0.194) TCGA-EE-A3J7-06 8 79645823 79645823 C T IL7 3'UTR 0.19 TCGA-EE-A3J7-06 8 86573764 86573764 G A REXO1L1P Nonsense_Mutation p.R655* 0.21 TCGA-EE-A3J7-06 8 86573765 86573765 G A REXO1L1P Silent p.V654V 0.17 TCGA-EE-A3J7-06 8 90958432 90958432 G A NBN Missense_Mutation p.S669F 0.34 tolerated(0.34) benign(0.265) TCGA-EE-A3J7-06 8 92972425 92972425 C T RUNX1T1 3'UTR 0.36 TCGA-EE-A3J7-06 8 98155493 98155493 A G CPQ 3'UTR 0.38 TCGA-EE-A3J7-06 9 100970981 100970981 G A TBC1D2 Missense_Mutation p.P707S 0.28 deleterious(0.04) probably_damaging(0.919) TCGA-EE-A3J7-06 9 101817609 101817609 C T COL15A1 Silent p.F1049F 0.40 TCGA-EE-A3J7-06 9 102866891 102866891 C T INVS Silent p.L30L 0.46 TCGA-EE-A3J7-06 9 104432921 104432921 C T GRIN3A Missense_Mutation p.M591I 0.19 tolerated(0.06) benign(0.103) TCGA-EE-A3J7-06 9 104433261 104433261 C T GRIN3A Nonsense_Mutation p.W478* 0.53 TCGA-EE-A3J7-06 9 107331743 107331743 G A OR13C8 Missense_Mutation p.V99M 0.28 tolerated(0.07) benign(0.019) TCGA-EE-A3J7-06 9 107568638 107568638 G A ABCA1 Nonsense_Mutation p.Q1450* 0.38 TCGA-EE-A3J7-06 9 107568639 107568639 G A ABCA1 Silent p.F1449F 0.38 TCGA-EE-A3J7-06 9 111970318 111970318 C T EPB41L4B Silent p.K588K 0.44 TCGA-EE-A3J7-06 9 113547963 113547963 C T MUSK Silent p.I581I 0.26 TCGA-EE-A3J7-06 9 116060265 116060265 G A RNF183 Missense_Mutation p.S67L 0.50 tolerated(0.14) benign(0.008) TCGA-EE-A3J7-06 9 116823304 116823304 C T AMBP Missense_Mutation p.G310R 0.33 deleterious(0) probably_damaging(0.99) TCGA-EE-A3J7-06 9 116824957 116824957 C T AMBP Missense_Mutation p.D229N 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 9 117808727 117808727 C T TNC Missense_Mutation p.G1696E 0.41 tolerated(0.31) probably_damaging(1) TCGA-EE-A3J7-06 9 122000994 122000994 G T BRINP1 Missense_Mutation p.D208E 0.27 tolerated(0.1) possibly_damaging(0.577) TCGA-EE-A3J7-06 9 124922255 124922255 G T MORN5 Nonsense_Mutation p.E2* 0.49 TCGA-EE-A3J7-06 9 125330475 125330475 G A OR1L8 Silent p.S94S 0.36 TCGA-EE-A3J7-06 9 127262843 127262843 G A NR5A1 Silent p.P132P 0.31 TCGA-EE-A3J7-06 9 127262844 127262844 G A NR5A1 Missense_Mutation p.P132L 0.31 tolerated(0.08) benign(0.165) TCGA-EE-A3J7-06 9 127700867 127700867 C T GOLGA1 Missense_Mutation p.G42R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 9 130551705 130551705 C T CDK9 Silent p.S334S 0.40 TCGA-EE-A3J7-06 9 130670814 130670814 G A ST6GALNAC4 Missense_Mutation p.R256W 0.35 possibly_damaging(0.473) TCGA-EE-A3J7-06 9 130825874 130825874 G A NAIF1 Nonsense_Mutation p.Q273* 0.38 TCGA-EE-A3J7-06 9 130854363 130854363 C T SLC25A25 Intron 0.38 TCGA-EE-A3J7-06 9 136528932 136528932 C T SARDH 3'UTR 0.06 TCGA-EE-A3J7-06 9 137676837 137676837 G A COL5A1 Silent p.G829G 0.16 TCGA-EE-A3J7-06 9 137734005 137734005 C T COL5A1 Silent p.T1791T 0.30 TCGA-EE-A3J7-06 9 138908222 138908222 G A NACC2 Missense_Mutation p.R314C 0.45 deleterious(0) probably_damaging(0.962) TCGA-EE-A3J7-06 9 140331055 140331055 G A ENTPD8 Missense_Mutation p.S235F 0.38 tolerated(0.55) benign(0.008) TCGA-EE-A3J7-06 9 17761432 17761432 C T SH3GL2 Intron 0.73 TCGA-EE-A3J7-06 9 17795610 17795610 G A SH3GL2 Missense_Mutation p.G310R 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.79 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J7-06 9 36671045 36671045 C T MELK Missense_Mutation p.P519L 0.85 deleterious(0.01) benign(0.439) TCGA-EE-A3J7-06 9 39140542 39140542 G A CNTNAP3 Missense_Mutation p.P617L 0.77 deleterious(0) benign(0.391) TCGA-EE-A3J7-06 9 43627338 43627347 ATTTCATTGA - SPATA31A6 Frame_Shift_Del p.F447Cfs*64 0.46 TCGA-EE-A3J7-06 9 6554674 6554674 G A GLDC Silent p.I770I 0.93 TCGA-EE-A3J7-06 9 72132046 72132046 G A APBA1 Silent p.A27A 0.36 TCGA-EE-A3J7-06 9 73168133 73168133 G A TRPM3 Missense_Mutation p.A1094V 0.41 deleterious(0) possibly_damaging(0.758) TCGA-EE-A3J7-06 9 75315533 75315533 G A TMC1 Silent p.K112K 0.51 TCGA-EE-A3J7-06 9 79320429 79320429 C T PRUNE2 Missense_Mutation p.S2254N 0.27 tolerated(0.38) benign(0.001) TCGA-EE-A3J7-06 9 84532555 84532555 G A SPATA31D5P RNA 0.37 TCGA-EE-A3J7-06 9 84608238 84608238 C T SPATA31D1 Silent p.I951I 0.40 TCGA-EE-A3J7-06 9 85862874 85862874 C T FRMD3 Missense_Mutation p.G585R 0.44 tolerated(0.08) benign(0.002) TCGA-EE-A3J7-06 9 86571209 86571209 G A C9orf64 Silent p.F69F 0.56 TCGA-EE-A3J7-06 9 88631453 88631453 G A NAA35 Splice_Site p.X523_splice 0.38 TCGA-EE-A3J7-06 9 90501596 90501596 G A SPATA31E1 Missense_Mutation p.E732K 0.30 tolerated(0.55) benign(0.008) TCGA-EE-A3J7-06 9 90501597 90501597 A C SPATA31E1 Missense_Mutation p.E732A 0.33 tolerated(0.41) benign(0.017) TCGA-EE-A3J7-06 9 91949601 91949601 C T SECISBP2 Missense_Mutation p.P349S 0.45 tolerated(0.15) benign(0.027) TCGA-EE-A3J7-06 9 93375669 93375669 G A DIRAS2 Silent p.F147F 0.14 TCGA-EE-A3J7-06 9 93976615 93976615 G A AUH 3'UTR 0.67 TCGA-EE-A3J7-06 9 96097661 96097661 C T C9orf129 Silent p.A120A 0.33 TCGA-EE-A3J7-06 9 98774978 98774978 C T ERCC6L2 Silent p.S354S 0.54 TCGA-EE-A3J7-06 X 102337762 102337762 C T NXF3 Missense_Mutation p.D236N 0.86 tolerated(0.4) benign(0.066) TCGA-EE-A3J7-06 X 105450359 105450359 A C MUM1L1 Missense_Mutation p.S312R 0.60 tolerated(0.39) benign(0.002) TCGA-EE-A3J7-06 X 114141464 114141464 G A HTR2C Missense_Mutation p.R288Q 0.93 tolerated(0.54) benign(0.006) TCGA-EE-A3J7-06 X 117786037 117786037 G A DOCK11 Missense_Mutation p.M1564I 1.00 tolerated(0.34) benign(0.169) TCGA-EE-A3J7-06 X 118109231 118109231 G A LONRF3 Missense_Mutation p.G163E 0.89 tolerated(0.13) probably_damaging(0.99) TCGA-EE-A3J7-06 X 118242361 118242361 C T KIAA1210 Missense_Mutation p.G284E 0.86 tolerated(0.05) benign(0.421) TCGA-EE-A3J7-06 X 12734245 12734245 A T FRMPD4 Missense_Mutation p.Q556L 0.89 tolerated(0.32) benign(0.009) TCGA-EE-A3J7-06 X 128674731 128674731 G A OCRL Missense_Mutation p.G17D 0.81 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-EE-A3J7-06 X 130417205 130417205 G A IGSF1 Missense_Mutation p.P234L 0.67 deleterious(0.01) possibly_damaging(0.856) TCGA-EE-A3J7-06 X 134421469 134421469 G A ZNF75D Missense_Mutation p.S378F 0.91 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A3J7-06 X 134989114 134989114 G A SAGE1 Missense_Mutation p.E256K 0.89 tolerated(0.09) benign(0.306) TCGA-EE-A3J7-06 X 135581896 135581896 C T HTATSF1 Missense_Mutation p.T109I 0.86 deleterious(0.04) benign(0.017) TCGA-EE-A3J7-06 X 137715022 137715022 C T FGF13 Missense_Mutation p.E253K 0.88 tolerated_low_confidence(0.17) benign(0.001) TCGA-EE-A3J7-06 X 138643952 138643952 C T F9 Nonsense_Mutation p.Q370* 0.89 TCGA-EE-A3J7-06 X 138644072 138644072 G A F9 Missense_Mutation p.D410N 0.95 deleterious(0) probably_damaging(1) TCGA-EE-A3J7-06 X 140985056 140985056 C T MAGEC3 Silent p.F504F 0.83 TCGA-EE-A3J7-06 X 140993876 140993876 C T MAGEC1 Missense_Mutation p.A229V 0.86 tolerated_low_confidence(0.31) unknown(0) TCGA-EE-A3J7-06 X 140995477 140995477 C T MAGEC1 Missense_Mutation p.P763S 0.86 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A3J7-06 X 146307386 146307386 G A MIR513A2 RNA 0.83 TCGA-EE-A3J7-06 X 148798152 148798152 G A MAGEA11 Missense_Mutation p.E336K 0.22 tolerated(0.07) benign(0.112) TCGA-EE-A3J7-06 X 150912691 150912691 G A CNGA2 Silent p.E572E 0.87 TCGA-EE-A3J7-06 X 151900372 151900372 G A MAGEA12 Silent p.F143F 0.90 TCGA-EE-A3J7-06 X 152159755 152159755 G A PNMA5 Missense_Mutation p.P130S 0.91 tolerated(0.23) benign(0.022) TCGA-EE-A3J7-06 X 153716816 153716816 G A SLC10A3 Missense_Mutation p.A155V 0.79 tolerated(0.32) benign(0.002) TCGA-EE-A3J7-06 X 21549990 21549990 C T CNKSR2 Missense_Mutation p.L370F 0.80 tolerated(0.49) benign(0.14) TCGA-EE-A3J7-06 X 23953394 23953394 C T CXorf58 Missense_Mutation p.P213S 0.85 deleterious(0.04) possibly_damaging(0.75) TCGA-EE-A3J7-06 X 27999214 27999214 C T DCAF8L1 Missense_Mutation p.E80K 0.89 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A3J7-06 X 30254876 30254876 G A MAGEB3 Missense_Mutation p.A279T 0.89 deleterious(0) probably_damaging(0.982) TCGA-EE-A3J7-06 X 37026648 37026648 G A FAM47C Missense_Mutation p.M55I 0.90 deleterious(0.04) benign(0.39) TCGA-EE-A3J7-06 X 38150211 38150211 C T RPGR Splice_Site p.X524_splice 0.68 TCGA-EE-A3J7-06 X 38150212 38150212 C T RPGR Silent p.K524K 0.68 TCGA-EE-A3J7-06 X 40982966 40982966 C T USP9X Nonsense_Mutation p.Q29* 0.17 TCGA-EE-A3J7-06 X 41203369 41203369 G A DDX3X Silent p.E284E 1.00 TCGA-EE-A3J7-06 X 41203370 41203370 G A DDX3X Missense_Mutation p.E285K 1.00 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J7-06 X 47272113 47272113 G A ZNF157 Missense_Mutation p.G214E 0.80 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3J7-06 X 48826487 48826487 G A KCND1 Silent p.T64T 0.22 TCGA-EE-A3J7-06 X 50351074 50351074 A T SHROOM4 Missense_Mutation p.L1023H 0.87 deleterious(0) probably_damaging(0.959) TCGA-EE-A3J7-06 X 71427432 71427432 C T ERCC6L Missense_Mutation p.M395I 0.11 tolerated(0.05) benign(0.082) TCGA-EE-A3J7-06 X 83351312 83351312 G A RPS6KA6 Missense_Mutation p.P621S 0.86 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3J7-06 X 91091009 91091009 G A PCDH11X Missense_Mutation p.G169E 0.94 tolerated(0.06) probably_damaging(1) TCGA-EE-A3J7-06 X 99849315 99849315 A G TNMD Missense_Mutation p.K127E 0.86 deleterious(0) probably_damaging(0.994) TCGA-EE-A3J7-06 X 99956510 99956510 G A SYTL4 Silent p.D90D 0.17 TCGA-EE-A3J8-06 10 102027414 102027414 G A CWF19L1 5'UTR 0.64 TCGA-EE-A3J8-06 10 104679626 104679626 C T CNNM2 Silent p.A463A 0.46 TCGA-EE-A3J8-06 10 125557523 125557523 C T CPXM2 Missense_Mutation p.M286I 0.56 deleterious(0.02) benign(0.208) TCGA-EE-A3J8-06 10 1284223 1284223 G A ADARB2 Silent p.F444F 0.16 TCGA-EE-A3J8-06 10 12870827 12870827 G A CAMK1D Missense_Mutation p.G367R 0.74 deleterious_low_confidence(0.05) benign(0.169) TCGA-EE-A3J8-06 10 129914209 129914209 G A MKI67 Missense_Mutation p.P155S 0.39 tolerated(0.36) benign(0.056) TCGA-EE-A3J8-06 10 13629110 13629110 C T PRPF18 Silent p.I8I 0.57 TCGA-EE-A3J8-06 10 25313734 25313734 C T THNSL1 Nonsense_Mutation p.R528* 0.38 TCGA-EE-A3J8-06 10 37430789 37430789 G A ANKRD30A Missense_Mutation p.E266K 0.24 tolerated(0.41) possibly_damaging(0.636) TCGA-EE-A3J8-06 10 48390024 48390024 G A RBP3 Missense_Mutation p.S285F 0.61 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J8-06 10 49448473 49448473 C T FRMPD2 Silent p.R210R 0.36 TCGA-EE-A3J8-06 10 50122269 50122269 C T LRRC18 5'UTR 0.65 TCGA-EE-A3J8-06 10 55566486 55566486 C T PCDH15 Silent p.L1633L 0.55 TCGA-EE-A3J8-06 10 55568560 55568560 C T PCDH15 Silent p.Q684Q 0.69 TCGA-EE-A3J8-06 10 5920177 5920177 A T ANKRD16 Silent p.S334S 0.35 TCGA-EE-A3J8-06 10 70916829 70916829 G A VPS26A Missense_Mutation p.G99E 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-EE-A3J8-06 10 7679270 7679270 G A ITIH5 Silent p.I191I 0.58 TCGA-EE-A3J8-06 10 97772304 97772304 G A CC2D2B Missense_Mutation p.E46K 0.39 tolerated(1) benign(0.006) TCGA-EE-A3J8-06 11 118220644 118220644 G A CD3G Missense_Mutation p.G89E 0.29 tolerated(0.07) possibly_damaging(0.642) TCGA-EE-A3J8-06 11 118362611 118362611 C T KMT2A Missense_Mutation p.R1658W 0.48 probably_damaging(0.997) TCGA-EE-A3J8-06 11 118969160 118969160 G A DPAGT1 Silent p.F227F 0.34 TCGA-EE-A3J8-06 11 124180299 124180299 G A OR8D1 Missense_Mutation p.R122C 0.44 deleterious(0.01) benign(0.015) TCGA-EE-A3J8-06 11 3150256 3150256 G A OSBPL5 Silent p.Y41Y 0.25 TCGA-EE-A3J8-06 11 55653314 55653314 G A TRIM51 Missense_Mutation p.R137Q 0.45 tolerated(0.09) benign(0.109) TCGA-EE-A3J8-06 11 558970 558970 G A C11orf35 Missense_Mutation p.S15L 1.00 tolerated(0.28) benign(0.003) TCGA-EE-A3J8-06 11 57148170 57148170 G A PRG3 Silent p.L4L 0.35 TCGA-EE-A3J8-06 11 57886005 57886005 G A OR9I1 Silent p.V304V 0.63 TCGA-EE-A3J8-06 11 60689555 60689555 G C TMEM109 Missense_Mutation p.R217P 0.29 deleterious(0) probably_damaging(0.931) TCGA-EE-A3J8-06 11 62996983 62996983 G A SLC22A25 Missense_Mutation p.R48C 0.22 deleterious(0.03) benign(0.331) TCGA-EE-A3J8-06 11 64757232 64757232 G A BATF2 Missense_Mutation p.S65F 0.26 deleterious(0.04) benign(0.173) TCGA-EE-A3J8-06 11 67171762 67171762 G A TBC1D10C Missense_Mutation p.G30E 0.68 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3J8-06 11 73829377 73829377 G A C2CD3 Silent p.V472V 0.31 TCGA-EE-A3J8-06 11 75188720 75188720 C A GDPD5 Missense_Mutation p.G21C 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 11 78449574 78449574 C T TENM4 Missense_Mutation p.G933E 0.60 deleterious(0) possibly_damaging(0.887) TCGA-EE-A3J8-06 11 93754581 93754581 T G HEPHL1 Missense_Mutation p.L16R 0.31 deleterious(0.03) possibly_damaging(0.762) TCGA-EE-A3J8-06 12 100550533 100550533 G C AC010203.1 3'Flank 0.38 TCGA-EE-A3J8-06 12 101295476 101295476 G A ANO4 5'UTR 0.53 TCGA-EE-A3J8-06 12 110370892 110370892 G A GIT2 Missense_Mutation p.S724L 0.59 tolerated(0.19) benign(0.003) TCGA-EE-A3J8-06 12 117217093 117217093 C T RNFT2 Silent p.T274T 0.52 TCGA-EE-A3J8-06 12 122618162 122618162 C T MLXIP Missense_Mutation p.P454S 0.50 tolerated(0.14) benign(0.009) TCGA-EE-A3J8-06 12 16753611 16753611 G A LMO3 Intron 0.41 TCGA-EE-A3J8-06 12 16753612 16753612 G T LMO3 Intron 0.41 TCGA-EE-A3J8-06 12 20774298 20774298 C T PDE3A Missense_Mutation p.A498V 0.46 tolerated(0.11) benign(0.015) TCGA-EE-A3J8-06 12 48137388 48137388 C T RAPGEF3 Missense_Mutation p.E584K 0.39 tolerated(0.1) benign(0.334) TCGA-EE-A3J8-06 12 48919933 48919933 C T OR8S1 Silent p.I173I 0.48 TCGA-EE-A3J8-06 12 52309829 52309829 T G ACVRL1 Missense_Mutation p.V353G 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 12 52938304 52938304 G A KRT71 3'UTR 0.50 TCGA-EE-A3J8-06 12 53452406 53452406 C T TENC1 Missense_Mutation p.P436S 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3J8-06 12 55355009 55355009 G A TESPA1 Missense_Mutation p.P504S 0.47 tolerated_low_confidence(0.16) possibly_damaging(0.803) TCGA-EE-A3J8-06 12 55688965 55688965 C T OR6C6 Missense_Mutation p.D18N 0.48 tolerated_low_confidence(0.22) benign(0.044) TCGA-EE-A3J8-06 12 55886782 55886782 C T OR6C68 Silent p.I207I 0.38 TCGA-EE-A3J8-06 12 57929324 57929324 G A DCTN2 Silent p.F74F 0.38 TCGA-EE-A3J8-06 12 662547 662547 G A B4GALNT3 Silent p.L486L 0.47 TCGA-EE-A3J8-06 12 71531935 71531935 C T TSPAN8 Splice_Site p.X112_splice 0.40 TCGA-EE-A3J8-06 12 7241545 7241545 C T C1R Missense_Mutation p.G268E 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 12 7522093 7522093 G A CD163L1 Missense_Mutation p.S1300L 0.48 deleterious(0.03) benign(0.109) TCGA-EE-A3J8-06 12 80647328 80647328 A C OTOGL Silent p.S447S 0.44 TCGA-EE-A3J8-06 12 86199302 86199302 C T RASSF9 Silent p.R162R 0.43 TCGA-EE-A3J8-06 13 29599814 29599814 G A MTUS2 Missense_Mutation p.A337T 0.43 tolerated(0.69) benign(0.004) TCGA-EE-A3J8-06 13 35733690 35733690 C T NBEA Missense_Mutation p.P1128S 0.48 tolerated_low_confidence(0.13) possibly_damaging(0.556) TCGA-EE-A3J8-06 13 73636330 73636330 C T KLF5 Missense_Mutation p.T198I 0.54 deleterious(0.03) probably_damaging(0.979) TCGA-EE-A3J8-06 13 97600276 97600276 G A RP11-65L19.4 5'Flank 0.19 TCGA-EE-A3J8-06 14 106204163 106204163 G A IGHG1 Missense_Mutation p.S379L 0.38 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3J8-06 14 106518643 106518643 G A IGHV3-7 Silent p.S36S 0.41 TCGA-EE-A3J8-06 14 106518644 106518644 G A IGHV3-7 Missense_Mutation p.S36F 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-EE-A3J8-06 14 20612737 20612737 G A OR4N5 Silent p.L281L 0.51 TCGA-EE-A3J8-06 14 20915794 20915794 C T OSGEP Silent p.R283R 0.64 TCGA-EE-A3J8-06 14 22539424 22539424 C T TRAV22 Missense_Mutation p.S95F 0.33 deleterious(0) probably_damaging(0.929) TCGA-EE-A3J8-06 14 42368155 42368155 G A LRFN5 Missense_Mutation p.E712K 0.41 tolerated_low_confidence(0.3) benign(0) TCGA-EE-A3J8-06 14 52156537 52156537 C T FRMD6 5'UTR 0.32 TCGA-EE-A3J8-06 14 58605023 58605023 C T C14orf37 Missense_Mutation p.G352S 0.38 tolerated(0.22) probably_damaging(0.931) TCGA-EE-A3J8-06 14 58605024 58605024 C T C14orf37 Silent p.E351E 0.38 TCGA-EE-A3J8-06 14 58831412 58831412 A T ARID4A Missense_Mutation p.I869L 0.51 tolerated_low_confidence(0.47) benign(0) TCGA-EE-A3J8-06 14 88652175 88652175 C T KCNK10 Missense_Mutation p.D446N 0.46 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-EE-A3J8-06 15 45661694 45661694 G A GATM Missense_Mutation p.P105L 0.36 tolerated(0.27) benign(0.018) TCGA-EE-A3J8-06 15 49031358 49031358 G T CEP152 Nonsense_Mutation p.C1407* 0.43 TCGA-EE-A3J8-06 15 58302906 58302906 T A ALDH1A2 Missense_Mutation p.K145I 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 15 66641432 66641432 G A TIPIN Silent p.L147L 0.23 TCGA-EE-A3J8-06 15 72549780 72549780 G A PARP6 Missense_Mutation p.P303L 0.30 tolerated(0.06) probably_damaging(0.932) TCGA-EE-A3J8-06 15 72549781 72549781 G A PARP6 Missense_Mutation p.P303S 0.31 deleterious(0.01) possibly_damaging(0.902) TCGA-EE-A3J8-06 15 75974676 75974676 C T CSPG4 Silent p.Q1636Q 0.57 TCGA-EE-A3J8-06 15 90611620 90611620 C T ZNF710 Silent p.S417S 0.49 TCGA-EE-A3J8-06 16 15204364 15204364 G A RP11-1186N24.5 RNA 0.43 TCGA-EE-A3J8-06 16 19580814 19580814 C T C16orf62 Silent p.S151S 0.41 TCGA-EE-A3J8-06 16 2028377 2028377 C T TBL3 Missense_Mutation p.A733V 0.50 tolerated(0.28) benign(0.077) TCGA-EE-A3J8-06 16 22545818 22545818 C T NPIPB5 Missense_Mutation p.P505L 0.11 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-EE-A3J8-06 16 23713998 23713998 C T ERN2 Missense_Mutation p.E342K 0.49 tolerated(0.42) benign(0.302) TCGA-EE-A3J8-06 16 28509498 28509498 C T APOBR Missense_Mutation p.R1018C 0.31 deleterious(0) unknown(0) TCGA-EE-A3J8-06 16 29999120 29999120 C T TAOK2 Missense_Mutation p.A1176V 0.50 tolerated_low_confidence(0.26) probably_damaging(0.97) TCGA-EE-A3J8-06 16 69727950 69727950 C T NFAT5 Nonsense_Mutation p.Q1408* 0.40 TCGA-EE-A3J8-06 16 76461443 76461443 G A CNTNAP4 Nonsense_Mutation p.W137* 0.47 TCGA-EE-A3J8-06 16 77225523 77225523 G A MON1B Silent p.E47E 0.48 TCGA-EE-A3J8-06 16 77225524 77225524 G A MON1B Missense_Mutation p.E48K 0.48 tolerated(0.35) benign(0.001) TCGA-EE-A3J8-06 16 823261 823261 G A MSLNL Silent p.F669F 0.43 TCGA-EE-A3J8-06 16 89809283 89809283 C T FANCA Silent p.L1230L 0.47 TCGA-EE-A3J8-06 16 90032355 90032355 C T DEF8 Missense_Mutation p.P508L 0.48 tolerated_low_confidence(0.11) benign(0.004) TCGA-EE-A3J8-06 16 9857387 9857387 C T GRIN2A Silent p.G1338G 0.40 TCGA-EE-A3J8-06 17 10351974 10351974 G A MYH4 Missense_Mutation p.H1498Y 0.93 deleterious(0) benign(0.259) TCGA-EE-A3J8-06 17 12832255 12832255 G A ARHGAP44 Silent p.Q158Q 1.00 TCGA-EE-A3J8-06 17 27896362 27896362 A G TP53I13 Silent p.R56R 0.12 TCGA-EE-A3J8-06 17 3653743 3653743 G A ITGAE Nonsense_Mutation p.Q643* 0.94 TCGA-EE-A3J8-06 17 47119686 47119686 G A IGF2BP1 Missense_Mutation p.E342K 0.98 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A3J8-06 17 48046687 48046687 A C DLX4 5'UTR 0.90 TCGA-EE-A3J8-06 17 7578530 7578530 A G TP53 Missense_Mutation p.F134L 0.95 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 17 80042406 80042406 G A FASN Missense_Mutation p.S1584F 0.91 deleterious(0) possibly_damaging(0.541) TCGA-EE-A3J8-06 18 28914025 28914025 G A DSG1 Missense_Mutation p.E289K 0.30 deleterious(0.02) benign(0.021) TCGA-EE-A3J8-06 18 44561085 44561085 G A TCEB3B Missense_Mutation p.P184L 0.35 tolerated(0.27) benign(0.058) TCGA-EE-A3J8-06 18 74091511 74091511 G A ZNF516 Silent p.P853P 0.36 TCGA-EE-A3J8-06 19 10165989 10165989 G A C3P1 RNA 0.32 TCGA-EE-A3J8-06 19 11031727 11031727 G A CARM1 Silent p.G513G 0.36 TCGA-EE-A3J8-06 19 11031728 11031728 A C CARM1 Missense_Mutation p.M514L 0.36 tolerated_low_confidence(0.44) benign(0.017) TCGA-EE-A3J8-06 19 15794549 15794549 C T CYP4F12 Silent p.F298F 0.45 TCGA-EE-A3J8-06 19 18092614 18092614 C T KCNN1 Missense_Mutation p.H199Y 0.54 deleterious(0) probably_damaging(0.969) TCGA-EE-A3J8-06 19 20607701 20607701 G A ZNF826P RNA 0.50 TCGA-EE-A3J8-06 19 2477146 2477146 T A GADD45B Missense_Mutation p.I89N 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 19 2477183 2477183 C T GADD45B Silent p.L101L 0.42 TCGA-EE-A3J8-06 19 35749931 35749931 G A LSR Missense_Mutation p.G228R 0.34 deleterious(0) probably_damaging(0.969) TCGA-EE-A3J8-06 19 36269237 36269237 T G ARHGAP33 Missense_Mutation p.V82G 0.46 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EE-A3J8-06 19 36940223 36940223 G A ZNF566 Missense_Mutation p.H306Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 19 41442375 41442375 G A CYP2B7P RNA 0.44 TCGA-EE-A3J8-06 19 41743950 41743950 G A AXL Silent p.R295R 0.54 TCGA-EE-A3J8-06 19 4179205 4179205 G A SIRT6 Silent p.P91P 0.38 TCGA-EE-A3J8-06 19 4219633 4219633 G A ANKRD24 Missense_Mutation p.E1017K 0.42 deleterious(0) probably_damaging(0.986) TCGA-EE-A3J8-06 19 42265197 42265197 C A CEACAM6 Missense_Mutation p.N155K 0.36 tolerated(0.07) benign(0.3) TCGA-EE-A3J8-06 19 42301621 42301621 C T CEACAM3 Silent p.V55V 0.46 TCGA-EE-A3J8-06 19 43411173 43411173 G A PSG6 Missense_Mutation p.P381S 0.28 tolerated(0.54) benign(0.261) TCGA-EE-A3J8-06 19 44097263 44097263 G A IRGQ Missense_Mutation p.P263S 0.50 tolerated(0.07) benign(0.094) TCGA-EE-A3J8-06 19 44770458 44770458 C T ZNF233 Silent p.F41F 0.41 TCGA-EE-A3J8-06 19 45422529 45422529 C T APOC1 3'UTR 0.55 TCGA-EE-A3J8-06 19 47278789 47278789 G A SLC1A5 Missense_Mutation p.S535F 0.51 tolerated(0.78) benign(0.001) TCGA-EE-A3J8-06 19 49656898 49656898 C T HRC Missense_Mutation p.E533K 0.46 deleterious(0) possibly_damaging(0.899) TCGA-EE-A3J8-06 19 51961464 51961464 C T SIGLEC8 Missense_Mutation p.D60N 0.44 tolerated(0.28) benign(0.044) TCGA-EE-A3J8-06 19 52146868 52146868 A C SIGLEC14 Missense_Mutation p.V357G 0.37 tolerated(0.5) benign(0.013) TCGA-EE-A3J8-06 19 54760057 54760057 T G LILRB5 Silent p.S168S 0.46 TCGA-EE-A3J8-06 19 55019312 55019312 G A LAIR2 Missense_Mutation p.E93K 0.46 deleterious(0.02) possibly_damaging(0.574) TCGA-EE-A3J8-06 19 55451437 55451437 G A NLRP7 Silent p.F250F 0.39 TCGA-EE-A3J8-06 19 56539219 56539219 G A NLRP5 Nonsense_Mutation p.W540* 0.53 TCGA-EE-A3J8-06 19 6459558 6459558 G A SLC25A23 Missense_Mutation p.R28C 0.48 deleterious(0.03) probably_damaging(0.984) TCGA-EE-A3J8-06 19 7805968 7805968 G A CD209 3'UTR 0.50 TCGA-EE-A3J8-06 19 856086 856086 C T ELANE Silent p.I242I 0.44 TCGA-EE-A3J8-06 19 9070067 9070067 G A MUC16 Silent p.I5793I 0.56 TCGA-EE-A3J8-06 19 9085504 9085504 C T MUC16 Missense_Mutation p.R2104K 0.47 unknown(0) TCGA-EE-A3J8-06 19 9085830 9085830 A T MUC16 Silent p.V1995V 0.44 TCGA-EE-A3J8-06 1 111778306 111778306 G A CHI3L2 Missense_Mutation p.E176K 0.35 tolerated(0.07) benign(0.102) TCGA-EE-A3J8-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.55 tolerated(0.06) benign(0.006) TCGA-EE-A3J8-06 1 12164553 12164553 C T TNFRSF8 Missense_Mutation p.S129F 0.58 deleterious(0) probably_damaging(0.983) TCGA-EE-A3J8-06 1 14105173 14105173 G A PRDM2 Missense_Mutation p.E295K 0.46 possibly_damaging(0.835) TCGA-EE-A3J8-06 1 151023071 151023071 A T C1orf56 3'UTR 0.47 TCGA-EE-A3J8-06 1 154112302 154112302 A G NUP210L Silent p.V231V 0.51 TCGA-EE-A3J8-06 1 158577107 158577107 G A OR10Z1 Silent p.R293R 0.47 TCGA-EE-A3J8-06 1 158735840 158735840 G A OR6N1 Silent p.F211F 0.42 TCGA-EE-A3J8-06 1 159284414 159284414 G A OR10J3 Silent p.F12F 0.48 TCGA-EE-A3J8-06 1 160720152 160720152 C T SLAMF7 Silent p.L236L 0.48 TCGA-EE-A3J8-06 1 161495526 161495526 G A HSPA6 Missense_Mutation p.E360K 0.46 deleterious_low_confidence(0.02) benign(0.196) TCGA-EE-A3J8-06 1 167887567 167887567 G A MPC2 Silent p.H126H 0.51 TCGA-EE-A3J8-06 1 169699572 169699572 C T SELE Splice_Site p.X239_splice 0.33 TCGA-EE-A3J8-06 1 172628636 172628636 C T FASLG Silent p.L99L 0.37 TCGA-EE-A3J8-06 1 173010511 173010511 G A TNFSF18 Missense_Mutation p.S199F 0.41 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J8-06 1 175372638 175372638 G A TNR Missense_Mutation p.P205L 0.43 deleterious(0.03) possibly_damaging(0.554) TCGA-EE-A3J8-06 1 175372639 175372639 G A TNR Missense_Mutation p.P205S 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3J8-06 1 179338084 179338084 C T AXDND1 Missense_Mutation p.P83S 0.48 tolerated(0.1) benign(0.016) TCGA-EE-A3J8-06 1 181680109 181680109 G T CACNA1E Nonsense_Mutation p.E359* 0.36 TCGA-EE-A3J8-06 1 18688694 18688694 C T IGSF21 Silent p.C170C 0.43 TCGA-EE-A3J8-06 1 205549915 205549915 C T MFSD4 Missense_Mutation p.H186Y 0.49 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A3J8-06 1 205628503 205628503 G A SLC45A3 Silent p.S507S 0.35 TCGA-EE-A3J8-06 1 21049315 21049315 C T SH2D5 Silent p.V334V 0.27 TCGA-EE-A3J8-06 1 215844436 215844436 C T USH2A Missense_Mutation p.E4671K 0.42 possibly_damaging(0.844) TCGA-EE-A3J8-06 1 216348630 216348630 G A USH2A Missense_Mutation p.P1531S 0.39 possibly_damaging(0.887) TCGA-EE-A3J8-06 1 23110990 23110990 A T EPHB2 Missense_Mutation p.I78F 0.37 deleterious(0) probably_damaging(0.945) TCGA-EE-A3J8-06 1 24447897 24447897 G A IL22RA1 Missense_Mutation p.P375S 0.54 tolerated(0.74) benign(0.367) TCGA-EE-A3J8-06 1 247875287 247875287 G A OR6F1 Silent p.F257F 0.43 TCGA-EE-A3J8-06 1 25555608 25555608 C T SYF2 Missense_Mutation p.A47T 0.41 deleterious(0) possibly_damaging(0.742) TCGA-EE-A3J8-06 1 34011768 34011768 C T CSMD2 Missense_Mutation p.R2846H 0.42 deleterious(0.03) benign(0.135) TCGA-EE-A3J8-06 1 36785297 36785297 G A SH3D21 Missense_Mutation p.V345I 0.11 deleterious(0.04) benign(0.002) TCGA-EE-A3J8-06 1 38261345 38261346 - A MANEAL Intron 0.41 TCGA-EE-A3J8-06 1 42047337 42047337 G A HIVEP3 Silent p.F1044F 0.45 TCGA-EE-A3J8-06 1 44426927 44426927 C T IPO13 Silent p.F779F 0.50 TCGA-EE-A3J8-06 1 57216787 57216787 G A C1orf168 Silent p.A439A 0.51 TCGA-EE-A3J8-06 1 57399065 57399065 C T C8B Missense_Mutation p.E499K 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 1 75707705 75707705 C T SLC44A5 Silent p.A171A 0.24 TCGA-EE-A3J8-06 1 78959017 78959017 G A PTGFR Missense_Mutation p.E197K 0.61 tolerated(0.91) benign(0.338) TCGA-EE-A3J8-06 1 94564545 94564545 G A ABCA4 Silent p.F191F 0.38 TCGA-EE-A3J8-06 20 2464422 2464422 G A ZNF343 Silent p.T395T 0.44 TCGA-EE-A3J8-06 20 24646160 24646160 G A SYNDIG1 3'UTR 0.37 TCGA-EE-A3J8-06 20 34090782 34090782 C T CEP250 Silent p.L1529L 0.38 TCGA-EE-A3J8-06 20 35885297 35885297 C T GHRH 5'UTR 0.23 TCGA-EE-A3J8-06 20 36992676 36992676 G A LBP Missense_Mutation p.E234K 0.47 tolerated(0.21) benign(0.206) TCGA-EE-A3J8-06 20 44181842 44181842 G A WFDC8 Silent p.I173I 0.52 TCGA-EE-A3J8-06 20 44278037 44278037 C T WFDC11 Silent p.R34R 0.43 TCGA-EE-A3J8-06 20 50769633 50769633 G A ZFP64 Silent p.C366C 0.48 TCGA-EE-A3J8-06 20 57768441 57768441 C T ZNF831 Silent p.A789A 0.46 TCGA-EE-A3J8-06 20 61143348 61143348 C T C20orf166 5'Flank 0.44 TCGA-EE-A3J8-06 20 6759103 6759103 C T BMP2 Silent p.F186F 0.45 TCGA-EE-A3J8-06 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.48 tolerated(0.4) benign(0) TCGA-EE-A3J8-06 21 10914420 10914420 G A TPTE Silent p.I433I 0.13 TCGA-EE-A3J8-06 21 37417938 37417938 G A SETD4 Missense_Mutation p.P223L 0.47 deleterious(0.02) possibly_damaging(0.557) TCGA-EE-A3J8-06 21 41725546 41725546 C T DSCAM Silent p.K260K 0.52 TCGA-EE-A3J8-06 21 43160954 43160954 G A RIPK4 3'UTR 0.50 TCGA-EE-A3J8-06 21 43855019 43855019 G A UBASH3A Missense_Mutation p.D450N 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 22 19209609 19209609 G A CLTCL1 Missense_Mutation p.P809L 0.45 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J8-06 22 19486669 19486669 C T CDC45 Silent p.I265I 0.41 TCGA-EE-A3J8-06 22 19776087 19776087 A G GNB1L 3'UTR 0.56 TCGA-EE-A3J8-06 22 26168438 26168438 C T MYO18B Silent p.V610V 0.48 TCGA-EE-A3J8-06 22 37171826 37171826 G A IFT27 5'UTR 0.50 TCGA-EE-A3J8-06 22 50750841 50750841 G A DENND6B Silent p.I522I 0.55 TCGA-EE-A3J8-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.29 tolerated(0.39) benign(0.015) TCGA-EE-A3J8-06 2 113875471 113875471 G A IL1RN 5'Flank 0.45 TCGA-EE-A3J8-06 2 128870751 128870751 G A UGGT1 Silent p.E205E 0.43 TCGA-EE-A3J8-06 2 128870752 128870752 G A UGGT1 Missense_Mutation p.E206K 0.44 tolerated(0.55) benign(0.016) TCGA-EE-A3J8-06 2 128922363 128922363 C T UGGT1 Missense_Mutation p.P962L 0.40 deleterious(0.04) benign(0.027) TCGA-EE-A3J8-06 2 136873442 136873442 C T CXCR4 Missense_Mutation p.G23E 0.51 tolerated(0.11) benign(0.241) TCGA-EE-A3J8-06 2 140992371 140992371 C T LRP1B Missense_Mutation p.G4548E 0.31 benign(0.041) TCGA-EE-A3J8-06 2 158272404 158272404 C T CYTIP Missense_Mutation p.E289K 0.43 tolerated(0.13) benign(0.05) TCGA-EE-A3J8-06 2 1652489 1652489 G A PXDN Silent p.I1021I 0.72 TCGA-EE-A3J8-06 2 168101652 168101652 G A XIRP2 Silent p.K1250K 0.50 TCGA-EE-A3J8-06 2 179392412 179392412 C T TTN Missense_Mutation p.G35814E 0.35 TCGA-EE-A3J8-06 2 179432386 179432386 C T TTN Missense_Mutation p.R26158K 0.40 TCGA-EE-A3J8-06 2 179458554 179458554 C T TTN Silent p.E19491E 0.64 TCGA-EE-A3J8-06 2 179529447 179529447 C T TTN Missense_Mutation p.E12046K 0.44 TCGA-EE-A3J8-06 2 179585769 179585769 G A TTN Silent p.F7659F 0.38 TCGA-EE-A3J8-06 2 179587872 179587872 C T TTN Missense_Mutation p.E7288K 0.33 TCGA-EE-A3J8-06 2 179615343 179615343 C T TTN Intron 0.31 TCGA-EE-A3J8-06 2 179616292 179616292 C T TTN Intron 0.47 TCGA-EE-A3J8-06 2 179621496 179621496 C T TTN Silent p.G3569G 0.38 TCGA-EE-A3J8-06 2 190571836 190571836 A T ANKAR Missense_Mutation p.N695Y 0.60 deleterious(0) possibly_damaging(0.629) TCGA-EE-A3J8-06 2 192701266 192701266 C T SDPR Missense_Mutation p.E221K 0.46 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3J8-06 2 196759756 196759756 C T DNAH7 Missense_Mutation p.G1614R 0.58 deleterious(0) probably_damaging(0.997) TCGA-EE-A3J8-06 2 202339374 202339374 C T STRADB Missense_Mutation p.A107V 0.48 deleterious(0) benign(0.201) TCGA-EE-A3J8-06 2 206921284 206921284 G A INO80D Missense_Mutation p.S201L 0.32 tolerated_low_confidence(0.47) benign(0.001) TCGA-EE-A3J8-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.52 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-EE-A3J8-06 2 227915811 227915811 C T COL4A4 Missense_Mutation p.G1011E 0.37 unknown(0) TCGA-EE-A3J8-06 2 232100035 232100035 C T ARMC9 Missense_Mutation p.L241F 0.42 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J8-06 2 233834931 233834931 C T NGEF Missense_Mutation p.E126K 0.43 tolerated_low_confidence(0.63) benign(0) TCGA-EE-A3J8-06 2 234878989 234878989 G A TRPM8 Missense_Mutation p.M758I 0.41 tolerated(0.53) benign(0.313) TCGA-EE-A3J8-06 2 239059547 239059547 A T KLHL30 Missense_Mutation p.E526D 0.44 tolerated(0.49) benign(0.005) TCGA-EE-A3J8-06 2 27438360 27438360 C T ATRAID Silent p.P159P 0.52 TCGA-EE-A3J8-06 2 27746354 27746354 G A GCKR 3'UTR 0.59 TCGA-EE-A3J8-06 2 31609293 31609293 C T XDH Silent p.G260G 0.42 TCGA-EE-A3J8-06 2 39934218 39934218 G A TMEM178A Missense_Mutation p.G182S 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3J8-06 2 40656659 40656659 C T SLC8A1 Silent p.R254R 0.50 TCGA-EE-A3J8-06 2 68607989 68607989 G A PLEK Silent p.R111R 0.43 TCGA-EE-A3J8-06 2 85598616 85598616 A G ELMOD3 Missense_Mutation p.K180E 0.44 deleterious(0.01) possibly_damaging(0.716) TCGA-EE-A3J8-06 3 102181165 102181165 G A ZPLD1 Missense_Mutation p.G224E 0.38 deleterious(0) probably_damaging(0.983) TCGA-EE-A3J8-06 3 102196336 102196336 G A ZPLD1 Silent p.L390L 0.53 TCGA-EE-A3J8-06 3 108474710 108474710 G A RETNLB Missense_Mutation p.S84L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 3 108635019 108635019 C T GUCA1C Missense_Mutation p.E133K 0.44 deleterious(0) benign(0.009) TCGA-EE-A3J8-06 3 108822756 108822756 C T MORC1 Missense_Mutation p.E55K 0.48 deleterious(0.03) possibly_damaging(0.859) TCGA-EE-A3J8-06 3 119263714 119263714 C T CD80 Missense_Mutation p.G34D 0.48 deleterious(0.04) possibly_damaging(0.896) TCGA-EE-A3J8-06 3 119263715 119263715 C T CD80 Splice_Site p.X34_splice 0.50 TCGA-EE-A3J8-06 3 126739070 126739070 C T PLXNA1 Silent p.I1307I 0.45 TCGA-EE-A3J8-06 3 128060553 128060553 T G EEFSEC Missense_Mutation p.C422G 0.32 deleterious(0) possibly_damaging(0.749) TCGA-EE-A3J8-06 3 129251489 129251489 C T RHO Silent p.S270S 0.51 TCGA-EE-A3J8-06 3 133901898 133901898 G A RYK Nonsense_Mutation p.Q375* 0.59 TCGA-EE-A3J8-06 3 13415253 13415253 C T NUP210 Missense_Mutation p.D518N 0.51 deleterious(0.02) probably_damaging(0.955) TCGA-EE-A3J8-06 3 134670529 134670529 C T EPHB1 Missense_Mutation p.S147F 0.42 deleterious(0) probably_damaging(0.992) TCGA-EE-A3J8-06 3 17056374 17056374 C T PLCL2 Silent p.L871L 0.42 TCGA-EE-A3J8-06 3 170724939 170724939 G A SLC2A2 Nonsense_Mutation p.Q204* 0.53 TCGA-EE-A3J8-06 3 173322660 173322660 G A NLGN1 Missense_Mutation p.G91E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 3 185330413 185330413 G A SENP2 Missense_Mutation p.R279K 0.50 tolerated(0.31) possibly_damaging(0.868) TCGA-EE-A3J8-06 3 186272727 186272727 G A TBCCD1 Missense_Mutation p.R336C 0.43 deleterious(0.01) possibly_damaging(0.504) TCGA-EE-A3J8-06 3 189611994 189611994 G A TP63 Splice_Site p.X583_splice 0.55 TCGA-EE-A3J8-06 3 48677985 48677985 C T CELSR3 Silent p.L3011L 0.47 TCGA-EE-A3J8-06 3 48683676 48683676 G A CELSR3 Missense_Mutation p.P2437L 0.38 tolerated(0.09) probably_damaging(0.996) TCGA-EE-A3J8-06 3 53155759 53155759 G A RFT1 Silent p.L172L 0.38 TCGA-EE-A3J8-06 3 69237038 69237038 C T FRMD4B Missense_Mutation p.R601Q 0.44 tolerated(0.13) benign(0.025) TCGA-EE-A3J8-06 3 77611842 77611842 C T ROBO2 Missense_Mutation p.S509L 0.36 deleterious(0.03) possibly_damaging(0.637) TCGA-EE-A3J8-06 3 97869149 97869149 G A OR5H14 Missense_Mutation p.R307K 0.71 tolerated(1) benign(0.005) TCGA-EE-A3J8-06 3 98002110 98002110 C T OR5H2 Missense_Mutation p.R127C 0.53 deleterious(0) probably_damaging(0.995) TCGA-EE-A3J8-06 4 120548382 120548382 G A PDE5A Intron 0.56 TCGA-EE-A3J8-06 4 123333824 123333824 T C ADAD1 Missense_Mutation p.V370A 0.51 tolerated(0.27) benign(0.021) TCGA-EE-A3J8-06 4 155506994 155506994 G A FGA Silent p.F529F 0.69 TCGA-EE-A3J8-06 4 156634459 156634459 G A GUCY1A3 Silent p.L432L 0.56 TCGA-EE-A3J8-06 4 156825262 156825262 G A TDO2 Missense_Mutation p.G43E 0.73 tolerated(0.09) benign(0.35) TCGA-EE-A3J8-06 4 159443126 159443126 G A RXFP1 5'UTR 0.61 TCGA-EE-A3J8-06 4 164272156 164272156 A G NPY5R Missense_Mutation p.N244S 0.26 tolerated(0.68) benign(0.001) TCGA-EE-A3J8-06 4 165891000 165891000 G A TRIM61 Missense_Mutation p.P52L 0.19 deleterious(0.03) possibly_damaging(0.712) TCGA-EE-A3J8-06 4 167656173 167656173 C T SPOCK3 Missense_Mutation p.D404N 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3J8-06 4 169611778 169611778 G A PALLD Missense_Mutation p.E454K 0.63 deleterious(0.02) benign(0.274) TCGA-EE-A3J8-06 4 189012721 189012721 G A TRIML2 Missense_Mutation p.L324F 0.28 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J8-06 4 71255668 71255668 G A SMR3B 3'UTR 0.67 TCGA-EE-A3J8-06 4 71508794 71508794 G A ENAM Missense_Mutation p.E551K 0.29 tolerated(0.13) benign(0.331) TCGA-EE-A3J8-06 4 72994493 72994493 G A NPFFR2 Missense_Mutation p.G164E 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 4 78082696 78082696 C T CCNG2 Silent p.I197I 0.33 TCGA-EE-A3J8-06 4 79525461 79525461 C T ANXA3 Nonsense_Mutation p.R274* 0.59 TCGA-EE-A3J8-06 4 898519 898519 G A GAK Missense_Mutation p.S144L 1.00 deleterious(0.01) possibly_damaging(0.566) TCGA-EE-A3J8-06 5 135601998 135601998 C T TRPC7 Missense_Mutation p.E419K 0.95 tolerated(0.83) benign(0.075) TCGA-EE-A3J8-06 5 13692188 13692188 C T DNAH5 Missense_Mutation p.D4594N 0.41 possibly_damaging(0.822) TCGA-EE-A3J8-06 5 140175559 140175559 C T PCDHA2 Missense_Mutation p.S337L 0.85 tolerated_low_confidence(1) benign(0) TCGA-EE-A3J8-06 5 140263656 140263656 G A PCDHA13 Silent p.S601S 0.95 TCGA-EE-A3J8-06 5 140307514 140307514 C T PCDHAC1 Missense_Mutation p.S346L 0.92 tolerated(0.09) benign(0.099) TCGA-EE-A3J8-06 5 140501671 140501671 C T PCDHB4 Missense_Mutation p.R31C 0.97 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EE-A3J8-06 5 148742246 148742246 C T PCYOX1L Silent p.L45L 0.95 TCGA-EE-A3J8-06 5 156915320 156915320 G A ADAM19 Missense_Mutation p.P835S 0.91 tolerated(0.08) probably_damaging(1) TCGA-EE-A3J8-06 5 170346460 170346460 C T RANBP17 Missense_Mutation p.P373S 0.47 tolerated(0.32) probably_damaging(0.964) TCGA-EE-A3J8-06 5 17354347 17354347 C T CTD-2139B15.2 RNA 0.41 TCGA-EE-A3J8-06 5 17354348 17354348 C T CTD-2139B15.2 RNA 0.42 TCGA-EE-A3J8-06 5 178140337 178140337 G A ZNF354A Missense_Mutation p.P181L 0.42 tolerated(0.06) benign(0.001) TCGA-EE-A3J8-06 5 2752551 2752551 G T C5orf38 Missense_Mutation p.W58L 0.33 tolerated_low_confidence(0.15) possibly_damaging(0.504) TCGA-EE-A3J8-06 5 2752552 2752552 G A C5orf38 Nonsense_Mutation p.W58* 0.33 TCGA-EE-A3J8-06 5 41052626 41052626 C T MROH2B Missense_Mutation p.E391K 0.44 tolerated(0.33) possibly_damaging(0.462) TCGA-EE-A3J8-06 5 41176815 41176815 A G C6 Silent p.D310D 0.50 TCGA-EE-A3J8-06 5 41382018 41382018 G A PLCXD3 Missense_Mutation p.S241L 0.50 deleterious(0.02) benign(0.075) TCGA-EE-A3J8-06 6 117630061 117630061 T A ROS1 Missense_Mutation p.L2155F 0.41 tolerated(0.06) probably_damaging(0.936) TCGA-EE-A3J8-06 6 143091612 143091612 G A HIVEP2 Missense_Mutation p.P1422S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3J8-06 6 146271487 146271487 C A SHPRH Missense_Mutation p.A299S 0.42 tolerated(0.2) probably_damaging(0.977) TCGA-EE-A3J8-06 6 149912000 149912000 G A GINM1 3'UTR 0.33 TCGA-EE-A3J8-06 6 159653120 159653120 C T FNDC1 Missense_Mutation p.R526C 0.60 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A3J8-06 6 169053734 169053734 G A SMOC2 Missense_Mutation p.E382K 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 6 170862327 170862327 A G PSMB1 Silent p.L2L 0.44 TCGA-EE-A3J8-06 6 25726745 25726745 C T HIST1H2AA Missense_Mutation p.R4Q 0.47 deleterious_low_confidence(0.02) benign(0.006) TCGA-EE-A3J8-06 6 32008463 32008463 C T CYP21A2 Silent p.I379I 0.19 TCGA-EE-A3J8-06 6 32948438 32948438 C T BRD2 Silent p.S818S 0.46 TCGA-EE-A3J8-06 6 39053786 39053786 G A GLP1R Silent p.L443L 0.49 TCGA-EE-A3J8-06 6 4060651 4060651 A C PRPF4B Missense_Mutation p.K942T 0.44 tolerated(0.15) unknown(0) TCGA-EE-A3J8-06 6 42603282 42603282 G T UBR2 Missense_Mutation p.D558Y 0.50 deleterious(0) probably_damaging(0.98) TCGA-EE-A3J8-06 6 43011351 43011351 G A CUL7 Missense_Mutation p.P1148S 0.45 tolerated(0.3) benign(0.047) TCGA-EE-A3J8-06 6 55739504 55739504 C T BMP5 Missense_Mutation p.E54K 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A3J8-06 6 7572147 7572147 G A DSP Missense_Mutation p.R659K 0.48 benign(0.058) TCGA-EE-A3J8-06 7 100336192 100336192 G A ZAN Missense_Mutation p.G241E 0.40 probably_damaging(0.95) TCGA-EE-A3J8-06 7 100677132 100677132 C T MUC17 Missense_Mutation p.P812L 0.41 unknown(0) TCGA-EE-A3J8-06 7 103338452 103338452 C T RELN Missense_Mutation p.E331K 0.47 tolerated(0.12) benign(0.022) TCGA-EE-A3J8-06 7 122131379 122131379 G A CADPS2 Silent p.T546T 0.43 TCGA-EE-A3J8-06 7 142334807 142334807 G A TRBV20-1 Missense_Mutation p.E77K 0.44 tolerated(0.71) benign(0) TCGA-EE-A3J8-06 7 142334808 142334808 A C TRBV20-1 Missense_Mutation p.E77A 0.43 tolerated(0.69) benign(0) TCGA-EE-A3J8-06 7 142625237 142625237 G A TRPV5 Silent p.S285S 0.40 TCGA-EE-A3J8-06 7 150715110 150715110 G A ATG9B Missense_Mutation p.P634S 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 7 151127093 151127093 G A CRYGN 3'UTR 0.53 TCGA-EE-A3J8-06 7 2274938 2274938 G T FTSJ2 Missense_Mutation p.P187H 0.33 deleterious(0.03) probably_damaging(0.915) TCGA-EE-A3J8-06 7 31146205 31146205 T G ADCYAP1R1 Missense_Mutation p.S466R 0.42 deleterious(0) benign(0.024) TCGA-EE-A3J8-06 7 43547627 43547627 C T HECW1 Missense_Mutation p.R1255C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3J8-06 7 44561409 44561409 G A NPC1L1 Missense_Mutation p.S952F 0.44 deleterious(0) probably_damaging(0.996) TCGA-EE-A3J8-06 7 5391579 5391579 C T TNRC18 Missense_Mutation p.G1781S 0.48 possibly_damaging(0.695) TCGA-EE-A3J8-06 7 5391580 5391580 C T TNRC18 Silent p.R1780R 0.48 TCGA-EE-A3J8-06 7 65447104 65447104 G A GUSB Silent p.L23L 0.21 TCGA-EE-A3J8-06 7 74212585 74212585 G A GTF2IRD2 Silent p.D422D 0.39 TCGA-EE-A3J8-06 7 82763921 82763921 G A PCLO Missense_Mutation p.S982F 0.58 unknown(0) TCGA-EE-A3J8-06 7 86394705 86394705 G A GRM3 Missense_Mutation p.D82N 0.41 tolerated(0.13) benign(0.273) TCGA-EE-A3J8-06 7 97875247 97875247 G A TECPR1 Missense_Mutation p.A71V 0.35 deleterious(0.01) benign(0.1) TCGA-EE-A3J8-06 7 99621867 99621867 C T ZKSCAN1 Missense_Mutation p.H173Y 0.38 tolerated(0.57) benign(0.207) TCGA-EE-A3J8-06 8 100847495 100847495 C T VPS13B Nonsense_Mutation p.R3254* 0.36 TCGA-EE-A3J8-06 8 103274276 103274276 A C UBR5 Missense_Mutation p.F2570C 0.33 deleterious(0) probably_damaging(0.993) TCGA-EE-A3J8-06 8 105367117 105367117 C T DCSTAMP Nonsense_Mutation p.Q348* 0.45 TCGA-EE-A3J8-06 8 110401307 110401307 G C PKHD1L1 Splice_Site p.X208_splice 0.45 TCGA-EE-A3J8-06 8 110457059 110457059 G A PKHD1L1 Missense_Mutation p.R1654Q 0.48 deleterious(0.03) benign(0.079) TCGA-EE-A3J8-06 8 121219325 121219325 C T COL14A1 Missense_Mutation p.P395S 0.41 tolerated(0.18) probably_damaging(1) TCGA-EE-A3J8-06 8 131104255 131104255 G A ASAP1 Missense_Mutation p.P846S 0.40 tolerated(0.22) benign(0.068) TCGA-EE-A3J8-06 8 144672257 144672257 G A EEF1D Intron 0.48 TCGA-EE-A3J8-06 8 21997708 21997708 G A REEP4 Silent p.I53I 0.07 TCGA-EE-A3J8-06 8 22865377 22865377 C T RHOBTB2 Intron 0.46 TCGA-EE-A3J8-06 8 55537910 55537910 G A RP1 Missense_Mutation p.E490K 0.52 tolerated(0.17) benign(0.037) TCGA-EE-A3J8-06 8 59852045 59852045 G A TOX Missense_Mutation p.P76L 0.39 deleterious(0) probably_damaging(0.987) TCGA-EE-A3J8-06 8 88885791 88885791 G A DCAF4L2 Missense_Mutation p.H137Y 0.51 tolerated(0.38) benign(0.022) TCGA-EE-A3J8-06 8 95541354 95541354 G A KIAA1429 Missense_Mutation p.P275L 0.60 tolerated(0.06) benign(0.005) TCGA-EE-A3J8-06 9 111668626 111668626 C T IKBKAP Missense_Mutation p.A534T 0.45 tolerated(0.29) benign(0.012) TCGA-EE-A3J8-06 9 113169455 113169455 C T SVEP1 Missense_Mutation p.G2809S 0.47 probably_damaging(1) TCGA-EE-A3J8-06 9 123751988 123751988 G A C5 Silent p.P1004P 0.27 TCGA-EE-A3J8-06 9 125330095 125330095 C T OR1L8 Missense_Mutation p.R221Q 0.26 tolerated(0.29) benign(0.076) TCGA-EE-A3J8-06 9 125513035 125513035 G A OR1L6 Silent p.K303K 0.56 TCGA-EE-A3J8-06 9 126128626 126128626 C T CRB2 Silent p.F245F 0.30 TCGA-EE-A3J8-06 9 127911958 127911958 G A PPP6C Silent p.F341F 0.30 TCGA-EE-A3J8-06 9 130230109 130230109 G A LRSAM1 Missense_Mutation p.E207K 0.28 deleterious(0.03) benign(0.154) TCGA-EE-A3J8-06 9 131872838 131872838 G A CRAT 5'UTR 0.38 TCGA-EE-A3J8-06 9 132618591 132618591 C T USP20 Silent p.T29T 0.93 TCGA-EE-A3J8-06 9 134379613 134379613 G A POMT1 Missense_Mutation p.G3E 0.96 tolerated_low_confidence(0.35) benign(0.014) TCGA-EE-A3J8-06 9 134384356 134384356 C A POMT1 Missense_Mutation p.F162L 0.90 deleterious(0) possibly_damaging(0.816) TCGA-EE-A3J8-06 9 139368510 139368510 G C SEC16A Silent p.L1186L 0.94 TCGA-EE-A3J8-06 9 15920413 15920413 T C CCDC171 Missense_Mutation p.L1249S 0.91 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3J8-06 9 95646227 95646227 C T RP11-526D8.7 RNA 0.96 TCGA-EE-A3J8-06 X 100911365 100911365 G A ARMCX2 Nonsense_Mutation p.Q404* 0.96 TCGA-EE-A3J8-06 X 133551267 133551267 C T PHF6 Silent p.Y301Y 1.00 TCGA-EE-A3J8-06 X 151092728 151092728 C T MAGEA4 Missense_Mutation p.P198S 0.99 deleterious(0) probably_damaging(1) TCGA-EE-A3J8-06 X 151453191 151453191 C T GABRA3 Silent p.V93V 0.92 TCGA-EE-A3JA-06 10 101590581 101590581 T A ABCC2 Silent p.I952I 0.39 TCGA-EE-A3JA-06 10 101716582 101716582 G A DNMBP Nonsense_Mutation p.Q217* 0.39 TCGA-EE-A3JA-06 10 102748634 102748634 G A C10orf2 Missense_Mutation p.E223K 0.39 tolerated(0.87) benign(0.001) TCGA-EE-A3JA-06 10 102797185 102797185 G A SFXN3 Silent p.L260L 0.37 TCGA-EE-A3JA-06 10 103912093 103912093 G A NOLC1 5'UTR 0.35 TCGA-EE-A3JA-06 10 1041920 1041920 C T GTPBP4 Missense_Mutation p.H91Y 0.42 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JA-06 10 106907399 106907399 G A SORCS3 Missense_Mutation p.E443K 0.23 deleterious(0) possibly_damaging(0.728) TCGA-EE-A3JA-06 10 111890219 111890219 C T ADD3 Silent p.I569I 0.25 TCGA-EE-A3JA-06 10 114186546 114186546 G A ACSL5 Missense_Mutation p.V670I 0.23 tolerated(0.15) benign(0.005) TCGA-EE-A3JA-06 10 115966074 115966074 G A TDRD1 Missense_Mutation p.E457K 0.34 tolerated(0.33) benign(0.06) TCGA-EE-A3JA-06 10 116055684 116055684 C T AFAP1L2 3'UTR 0.33 TCGA-EE-A3JA-06 10 116732026 116732026 C T TRUB1 Silent p.F243F 0.26 TCGA-EE-A3JA-06 10 118236685 118236685 G A PNLIPRP3 3'UTR 0.25 TCGA-EE-A3JA-06 10 119044791 119044791 A G PDZD8 Silent p.L485L 0.33 TCGA-EE-A3JA-06 10 119100597 119100597 G A PDZD8 Missense_Mutation p.P297S 0.36 deleterious(0.01) possibly_damaging(0.685) TCGA-EE-A3JA-06 10 122622429 122622429 C T WDR11 Missense_Mutation p.P237S 0.30 tolerated(0.14) benign(0.146) TCGA-EE-A3JA-06 10 123842527 123842527 C T TACC2 Missense_Mutation p.P171L 0.32 benign(0.424) TCGA-EE-A3JA-06 10 123845834 123845834 G A TACC2 Silent p.E1273E 0.33 TCGA-EE-A3JA-06 10 124457463 124457463 G A C10orf120 Missense_Mutation p.S265L 0.31 deleterious(0) benign(0.288) TCGA-EE-A3JA-06 10 127414390 127414390 C T EDRF1 Missense_Mutation p.P259S 0.42 tolerated(0.14) benign(0.015) TCGA-EE-A3JA-06 10 133769419 133769419 C T PPP2R2D Silent p.A407A 0.34 TCGA-EE-A3JA-06 10 134219612 134219612 G A PWWP2B Silent p.T536T 0.10 TCGA-EE-A3JA-06 10 134623944 134623944 C T TTC40 Missense_Mutation p.E2545K 0.38 tolerated_low_confidence(0.06) benign(0.075) TCGA-EE-A3JA-06 10 134981782 134981782 C T KNDC1 Missense_Mutation p.P109L 0.31 deleterious(0) probably_damaging(0.972) TCGA-EE-A3JA-06 10 135103366 135103366 G A TUBGCP2 Missense_Mutation p.S469F 0.26 deleterious(0.05) possibly_damaging(0.543) TCGA-EE-A3JA-06 10 135372429 135372429 C T SYCE1 Missense_Mutation p.G75R 0.44 tolerated(0.09) probably_damaging(0.997) TCGA-EE-A3JA-06 10 16979627 16979627 C T CUBN Missense_Mutation p.D1964N 0.28 tolerated(0.28) benign(0.007) TCGA-EE-A3JA-06 10 21309078 21309078 G A NEBL Missense_Mutation p.R39C 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 10 21415039 21415039 C T C10orf113 Missense_Mutation p.E61K 0.29 tolerated_low_confidence(0.09) possibly_damaging(0.801) TCGA-EE-A3JA-06 10 22048520 22048520 G A DNAJC1 Missense_Mutation p.S392L 0.36 deleterious(0.01) benign(0.051) TCGA-EE-A3JA-06 10 22607905 22607905 C T COMMD3-BMI1 Missense_Mutation p.P123L 0.29 tolerated_low_confidence(0.09) benign(0.002) TCGA-EE-A3JA-06 10 24813316 24813316 G A KIAA1217 Missense_Mutation p.E841K 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3JA-06 10 25886748 25886748 G A GPR158 Silent p.K731K 0.37 TCGA-EE-A3JA-06 10 28030318 28030318 C T MKX Missense_Mutation p.E102K 0.34 deleterious(0) possibly_damaging(0.673) TCGA-EE-A3JA-06 10 30315630 30315630 C T KIAA1462 Silent p.R1149R 0.37 TCGA-EE-A3JA-06 10 30316768 30316768 G A KIAA1462 Missense_Mutation p.S770F 0.36 tolerated(0.09) benign(0.052) TCGA-EE-A3JA-06 10 35500802 35500802 G A CREM 3'UTR 0.25 TCGA-EE-A3JA-06 10 37425564 37425564 G A ANKRD30A Missense_Mutation p.R206Q 0.26 tolerated(0.17) benign(0.005) TCGA-EE-A3JA-06 10 43614995 43614995 C T RET Silent p.I803I 0.43 TCGA-EE-A3JA-06 10 46999070 46999070 G A GPRIN2 Missense_Mutation p.E64K 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A3JA-06 10 48438697 48438697 G A GDF10 Missense_Mutation p.P5L 0.17 tolerated_low_confidence(0.1) benign(0) TCGA-EE-A3JA-06 10 50667245 50667245 G A ERCC6 Silent p.V1366V 0.33 TCGA-EE-A3JA-06 10 50724501 50724501 G A ERCC6-PGBD3 Silent p.D688D 0.44 TCGA-EE-A3JA-06 10 51889249 51889249 C T FAM21A Missense_Mutation p.S1053F 0.74 deleterious(0) probably_damaging(0.956) TCGA-EE-A3JA-06 10 5415840 5415840 C T UCN3 Silent p.L53L 0.22 TCGA-EE-A3JA-06 10 5435516 5435516 C T TUBAL3 Silent p.L435L 0.31 TCGA-EE-A3JA-06 10 55570348 55570348 C T PCDH15 Missense_Mutation p.G1491S 0.28 benign(0.038) TCGA-EE-A3JA-06 10 68857370 68857370 C T LRRTM3 Missense_Mutation p.T521I 0.40 tolerated_low_confidence(0.13) benign(0.372) TCGA-EE-A3JA-06 10 70043999 70043999 G A PBLD Missense_Mutation p.P268S 0.39 tolerated(0.79) benign(0.004) TCGA-EE-A3JA-06 10 71175867 71175867 G A TACR2 Silent p.F71F 0.32 TCGA-EE-A3JA-06 10 71880961 71880961 G A AIFM2 Missense_Mutation p.P101S 0.30 tolerated(1) benign(0.004) TCGA-EE-A3JA-06 10 73450341 73450341 G A CDH23 Missense_Mutation p.G318R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 10 75051662 75051662 G A TTC18 Silent p.S697S 0.31 TCGA-EE-A3JA-06 10 75407027 75407027 G A SYNPO2L Silent p.L795L 0.30 TCGA-EE-A3JA-06 10 75435569 75435569 G A AGAP5 Silent p.P283P 0.46 TCGA-EE-A3JA-06 10 75435570 75435570 G A AGAP5 Missense_Mutation p.P283L 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 10 82095911 82095911 C T DYDC1 3'UTR 0.41 TCGA-EE-A3JA-06 10 91198523 91198523 G A SLC16A12 Missense_Mutation p.S289F 0.41 tolerated(0.22) probably_damaging(1) TCGA-EE-A3JA-06 10 95346994 95346994 G A FFAR4 Silent p.R254R 0.42 TCGA-EE-A3JA-06 10 95372583 95372583 G A PDE6C Missense_Mutation p.G34E 0.34 tolerated(0.18) benign(0.342) TCGA-EE-A3JA-06 10 96443702 96443702 C T CYP2C18 Silent p.I42I 0.31 TCGA-EE-A3JA-06 10 96466555 96466555 C T CYP2C18 Silent p.F219F 0.41 TCGA-EE-A3JA-06 10 96522588 96522588 C T CYP2C19 Silent p.I42I 0.36 TCGA-EE-A3JA-06 10 96535210 96535210 G A CYP2C19 Missense_Mutation p.R132Q 0.39 deleterious(0.01) benign(0.279) TCGA-EE-A3JA-06 10 96535211 96535211 G A CYP2C19 Silent p.R132R 0.39 TCGA-EE-A3JA-06 10 98111145 98111145 C T OPALIN Missense_Mutation p.G21E 0.29 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-EE-A3JA-06 11 101771168 101771168 A T ANGPTL5 Missense_Mutation p.D218E 0.18 deleterious(0.04) possibly_damaging(0.664) TCGA-EE-A3JA-06 11 102709923 102709923 G A MMP3 Silent p.I329I 0.27 TCGA-EE-A3JA-06 11 113283325 113283325 G A DRD2 Missense_Mutation p.S364F 0.78 tolerated(0.66) possibly_damaging(0.903) TCGA-EE-A3JA-06 11 116746668 116746668 G A SIK3 Nonsense_Mutation p.R327* 0.76 TCGA-EE-A3JA-06 11 118375357 118375357 C T KMT2A Missense_Mutation p.S2917F 0.72 probably_damaging(0.959) TCGA-EE-A3JA-06 11 118916197 118916197 G A HYOU1 3'UTR 0.75 TCGA-EE-A3JA-06 11 120111038 120111038 C T POU2F3 Intron 1.00 TCGA-EE-A3JA-06 11 124120449 124120449 G A OR8G1 Silent p.V9V 0.71 TCGA-EE-A3JA-06 11 124180116 124180116 G A OR8D1 Missense_Mutation p.P183S 0.60 deleterious(0.03) possibly_damaging(0.828) TCGA-EE-A3JA-06 11 124189203 124189203 C T OR8D2 Silent p.V297V 0.70 TCGA-EE-A3JA-06 11 124252919 124252919 G A OR8B2 Silent p.F107F 0.75 TCGA-EE-A3JA-06 11 133795684 133795684 C T IGSF9B Missense_Mutation p.D662N 0.66 deleterious(0.05) probably_damaging(0.999) TCGA-EE-A3JA-06 11 134244587 134244587 C T GLB1L2 Missense_Mutation p.P600L 0.68 deleterious(0.01) benign(0.278) TCGA-EE-A3JA-06 11 134254059 134254059 C T B3GAT1 Missense_Mutation p.E46K 0.80 tolerated_low_confidence(0.52) benign(0.014) TCGA-EE-A3JA-06 11 1629394 1629394 C T KRTAP5-3 Silent p.K74K 0.46 TCGA-EE-A3JA-06 11 18750520 18750520 G A PTPN5 Silent p.S553S 0.25 TCGA-EE-A3JA-06 11 18750521 18750521 C T PTPN5 Missense_Mutation p.S553N 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A3JA-06 11 22770718 22770718 G A GAS2 Missense_Mutation p.E176K 0.51 deleterious(0.03) probably_damaging(0.96) TCGA-EE-A3JA-06 11 22777493 22777493 C T GAS2 Silent p.F239F 0.54 TCGA-EE-A3JA-06 11 24784836 24784836 C T LUZP2 Silent p.I126I 0.43 TCGA-EE-A3JA-06 11 25071603 25071603 G A LUZP2 Missense_Mutation p.G262E 0.54 tolerated(0.73) benign(0.008) TCGA-EE-A3JA-06 11 2610036 2610036 G A KCNQ1 Missense_Mutation p.E449K 0.31 tolerated(0.37) benign(0.206) TCGA-EE-A3JA-06 11 26484597 26484597 T G ANO3 Missense_Mutation p.Y112D 0.24 deleterious_low_confidence(0.01) benign(0.003) TCGA-EE-A3JA-06 11 27016792 27016792 C T FIBIN 3'UTR 0.47 TCGA-EE-A3JA-06 11 28119464 28119464 G A KIF18A Missense_Mutation p.H11Y 0.25 deleterious(0) possibly_damaging(0.649) TCGA-EE-A3JA-06 11 30255117 30255117 G A FSHB Missense_Mutation p.D54N 0.22 tolerated(0.05) possibly_damaging(0.523) TCGA-EE-A3JA-06 11 30953327 30953327 C T DCDC1 Missense_Mutation p.R963Q 0.32 tolerated(0.36) benign(0.354) TCGA-EE-A3JA-06 11 3150291 3150291 G A OSBPL5 Missense_Mutation p.R30W 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A3JA-06 11 36597025 36597025 C T RAG1 Missense_Mutation p.S724F 0.43 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EE-A3JA-06 11 45672209 45672209 G A CHST1 Silent p.L89L 0.28 TCGA-EE-A3JA-06 11 45987079 45987079 G A PHF21A Silent p.I260I 0.68 TCGA-EE-A3JA-06 11 4661506 4661506 G A OR51D1 Silent p.L162L 0.53 TCGA-EE-A3JA-06 11 47350211 47350211 C T MADD Missense_Mutation p.P1599S 0.58 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3JA-06 11 4825826 4825826 C T OR52R1 5'Flank 0.33 TCGA-EE-A3JA-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.10 TCGA-EE-A3JA-06 11 48347050 48347050 C T OR4C3 Silent p.L186L 0.12 TCGA-EE-A3JA-06 11 4929233 4929233 C T OR51A7 Silent p.L212L 0.36 TCGA-EE-A3JA-06 11 5010977 5010977 G A MMP26 Missense_Mutation p.D67N 0.29 tolerated(0.08) benign(0.001) TCGA-EE-A3JA-06 11 5221617 5221617 G A OR51V1 Missense_Mutation p.S105F 0.33 deleterious(0.03) benign(0.022) TCGA-EE-A3JA-06 11 5254108 5254108 G A HBD 3'UTR 0.48 TCGA-EE-A3JA-06 11 55038289 55038289 C T TRIM48 3'UTR 0.22 TCGA-EE-A3JA-06 11 55136294 55136294 C T OR4A15 Missense_Mutation p.P312L 0.51 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EE-A3JA-06 11 55419021 55419021 C T OR4S2 Silent p.I214I 0.54 TCGA-EE-A3JA-06 11 55541605 55541605 G A OR5D13 Missense_Mutation p.R231Q 0.58 tolerated(0.13) benign(0.002) TCGA-EE-A3JA-06 11 55579090 55579090 C T OR5L1 Nonsense_Mutation p.Q50* 0.50 TCGA-EE-A3JA-06 11 55595369 55595369 C T OR5L2 Silent p.I225I 0.18 TCGA-EE-A3JA-06 11 55904272 55904272 G A OR8J3 Missense_Mutation p.P308L 0.24 tolerated(0.98) benign(0.003) TCGA-EE-A3JA-06 11 55905009 55905009 G A OR8J3 Silent p.F62F 0.20 TCGA-EE-A3JA-06 11 56230598 56230598 C T OR5M9 Missense_Mutation p.G94R 0.51 deleterious(0) benign(0.031) TCGA-EE-A3JA-06 11 56949280 56949280 C T LRRC55 5'UTR 0.50 TCGA-EE-A3JA-06 11 57114888 57114888 G A P2RX3 Splice_Site p.X110_splice 0.82 TCGA-EE-A3JA-06 11 57136835 57136835 G A P2RX3 Missense_Mutation p.G335E 0.27 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JA-06 11 57256811 57256811 G A SLC43A1 Silent p.L416L 0.20 TCGA-EE-A3JA-06 11 5842093 5842093 C T OR52N2 Silent p.I176I 0.54 TCGA-EE-A3JA-06 11 58711035 58711035 C T GLYATL1 Missense_Mutation p.S15F 0.58 deleterious_low_confidence(0.04) probably_damaging(0.919) TCGA-EE-A3JA-06 11 58723273 58723273 G A GLYATL1 Missense_Mutation p.E259K 0.29 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JA-06 11 58893163 58893163 C T FAM111B Silent p.S531S 0.57 TCGA-EE-A3JA-06 11 59224646 59224646 C T OR4D6 Silent p.I71I 0.52 TCGA-EE-A3JA-06 11 608919 608919 C T PHRF1 Missense_Mutation p.P1154S 0.32 tolerated(0.47) benign(0.047) TCGA-EE-A3JA-06 11 62291225 62291225 G A AHNAK Missense_Mutation p.P3555L 0.27 probably_damaging(0.967) TCGA-EE-A3JA-06 11 64502688 64502688 C T RASGRP2 Silent p.R436R 0.59 TCGA-EE-A3JA-06 11 64559739 64559739 G A MAP4K2 Missense_Mutation p.P607S 0.49 deleterious(0.04) benign(0.102) TCGA-EE-A3JA-06 11 65347940 65347940 C T EHBP1L1 Silent p.V208V 0.19 TCGA-EE-A3JA-06 11 65347941 65347941 C T EHBP1L1 Missense_Mutation p.P209S 0.19 tolerated(0.23) benign(0.026) TCGA-EE-A3JA-06 11 66062051 66062051 C T TMEM151A Missense_Mutation p.L112F 0.47 deleterious(0) possibly_damaging(0.827) TCGA-EE-A3JA-06 11 66136998 66136998 G A SLC29A2 Silent p.F39F 0.26 TCGA-EE-A3JA-06 11 66333340 66333340 A T CTSF Missense_Mutation p.F309Y 0.51 deleterious(0.02) benign(0.213) TCGA-EE-A3JA-06 11 66335115 66335115 G A CTSF Silent p.L111L 0.64 TCGA-EE-A3JA-06 11 66466947 66466947 G A SPTBN2 Missense_Mutation p.R1236C 0.48 deleterious(0.01) probably_damaging(0.95) TCGA-EE-A3JA-06 11 71276950 71276950 C T KRTAP5-10 Missense_Mutation p.S106F 0.47 unknown(0) TCGA-EE-A3JA-06 11 72083978 72083978 G A CLPB Missense_Mutation p.P243S 0.50 tolerated_low_confidence(0.16) benign(0.058) TCGA-EE-A3JA-06 11 72288613 72288613 C T PDE2A Missense_Mutation p.A881T 0.57 tolerated(0.14) benign(0.14) TCGA-EE-A3JA-06 11 72397146 72397146 G A ARAP1 Nonsense_Mutation p.R1426* 0.53 TCGA-EE-A3JA-06 11 72408111 72408111 G A ARAP1 Missense_Mutation p.S1028F 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JA-06 11 77727910 77727910 G A KCTD14 Missense_Mutation p.S166F 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 11 78516398 78516398 G A TENM4 Silent p.F706F 0.62 TCGA-EE-A3JA-06 11 78516487 78516487 C T TENM4 Missense_Mutation p.E677K 0.40 tolerated(0.12) benign(0.042) TCGA-EE-A3JA-06 11 86133782 86133782 C T CCDC81 3'UTR 0.21 TCGA-EE-A3JA-06 11 88780987 88780987 C T GRM5 Silent p.G18G 0.47 TCGA-EE-A3JA-06 11 89911136 89911136 G A NAALAD2 Missense_Mutation p.R570Q 0.58 tolerated(0.34) probably_damaging(1) TCGA-EE-A3JA-06 11 93845059 93845059 G A HEPHL1 Silent p.%3D 0.51 TCGA-EE-A3JA-06 11 94278590 94278590 T A FUT4 Missense_Mutation p.L431M 0.28 deleterious(0.02) probably_damaging(0.917) TCGA-EE-A3JA-06 11 94759477 94759477 G A KDM4E Silent p.K252K 0.22 TCGA-EE-A3JA-06 11 9494243 9494243 T C ZNF143 Silent p.N44N 0.34 TCGA-EE-A3JA-06 12 10007084 10007084 C T CLEC2B Splice_Site p.X80_splice 0.22 TCGA-EE-A3JA-06 12 101561890 101561890 G A SLC5A8 Missense_Mutation p.P435L 0.33 deleterious(0) possibly_damaging(0.678) TCGA-EE-A3JA-06 12 101576622 101576622 G A SLC5A8 Missense_Mutation p.S375L 0.38 tolerated(0.09) benign(0.032) TCGA-EE-A3JA-06 12 104370810 104370810 C T TDG Silent p.A46A 0.21 TCGA-EE-A3JA-06 12 10603648 10603648 C T KLRC1 Silent p.Q36Q 0.45 TCGA-EE-A3JA-06 12 10750659 10750659 C T KLRAP1 RNA 0.43 TCGA-EE-A3JA-06 12 108011178 108011178 G A BTBD11 Missense_Mutation p.M732I 0.35 deleterious(0.04) possibly_damaging(0.447) TCGA-EE-A3JA-06 12 108034182 108034182 C T BTBD11 Silent p.A944A 0.32 TCGA-EE-A3JA-06 12 110969391 110969391 A G RAD9B Missense_Mutation p.K416R 0.33 tolerated_low_confidence(0.23) benign(0.035) TCGA-EE-A3JA-06 12 111066588 111066588 C T TCTN1 Silent p.S163S 0.39 TCGA-EE-A3JA-06 12 111785930 111785930 C T CUX2 Missense_Mutation p.S1421F 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EE-A3JA-06 12 111948322 111948322 G A ATXN2 Silent p.T701T 0.31 TCGA-EE-A3JA-06 12 113307728 113307728 G A RPH3A Missense_Mutation p.G227E 0.27 tolerated(0.13) possibly_damaging(0.743) TCGA-EE-A3JA-06 12 113537721 113537721 C T RASAL1 3'UTR 0.40 TCGA-EE-A3JA-06 12 113543643 113543643 C T RASAL1 Missense_Mutation p.R570Q 0.27 deleterious(0) possibly_damaging(0.657) TCGA-EE-A3JA-06 12 113758480 113758480 G A SLC8B1 Silent p.F144F 0.17 TCGA-EE-A3JA-06 12 117718539 117718539 C T NOS1 Silent p.Q505Q 0.33 TCGA-EE-A3JA-06 12 120582728 120582728 C T GCN1L1 Silent p.Q1718Q 0.30 TCGA-EE-A3JA-06 12 122676082 122676082 G A LRRC43 Missense_Mutation p.E353K 0.38 tolerated(0.08) probably_damaging(0.943) TCGA-EE-A3JA-06 12 123200607 123200607 G A HCAR3 Silent p.I226I 0.29 TCGA-EE-A3JA-06 12 124228404 124228404 C T ATP6V0A2 Missense_Mutation p.R371C 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JA-06 12 124315112 124315112 G A DNAH10 Missense_Mutation p.E1353K 0.33 benign(0.035) TCGA-EE-A3JA-06 12 125834659 125834659 G A TMEM132B Nonsense_Mutation p.W238* 0.34 TCGA-EE-A3JA-06 12 126137025 126137025 G A TMEM132B Silent p.K646K 0.38 TCGA-EE-A3JA-06 12 126139335 126139335 G A TMEM132B 3'UTR 0.56 TCGA-EE-A3JA-06 12 131487353 131487353 G A GPR133 Intron 0.23 TCGA-EE-A3JA-06 12 132211580 132211580 C T SFSWAP Missense_Mutation p.L310F 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JA-06 12 133218418 133218418 A T POLE Silent p.L1731L 0.30 TCGA-EE-A3JA-06 12 13828763 13828763 C T GRIN2B Silent p.R347R 0.33 TCGA-EE-A3JA-06 12 14613723 14613723 C T ATF7IP Missense_Mutation p.S818F 0.30 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JA-06 12 14792868 14792868 C T GUCY2C Silent p.V695V 0.32 TCGA-EE-A3JA-06 12 15747888 15747888 C T PTPRO Silent p.I1188I 0.22 TCGA-EE-A3JA-06 12 18715676 18715676 G A PIK3C2G Silent p.L1169L 0.36 TCGA-EE-A3JA-06 12 20799495 20799495 C T PDE3A Missense_Mutation p.L775F 0.32 tolerated(0.53) benign(0.021) TCGA-EE-A3JA-06 12 21229480 21229480 G A SLCO1B7 Silent p.R567R 0.41 TCGA-EE-A3JA-06 12 25259938 25259938 C T LRMP Missense_Mutation p.L404F 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3JA-06 12 25261758 25261758 C T CASC1 Splice_Site p.X632_splice 0.27 TCGA-EE-A3JA-06 12 26218212 26218212 C T RASSF8 Silent p.I295I 0.32 TCGA-EE-A3JA-06 12 2705156 2705156 C T CACNA1C Missense_Mutation p.S927F 0.34 deleterious(0) probably_damaging(0.943) TCGA-EE-A3JA-06 12 2800411 2800411 C T CACNA1C 3'UTR 0.50 TCGA-EE-A3JA-06 12 33031001 33031001 G A PKP2 Silent p.V271V 0.44 TCGA-EE-A3JA-06 12 34179674 34179674 C T ALG10 Missense_Mutation p.R416C 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 12 38712071 38712071 C T ALG10B Silent p.P60P 0.38 TCGA-EE-A3JA-06 12 40692042 40692042 C T LRRK2 Intron 0.27 TCGA-EE-A3JA-06 12 43895991 43895991 C T ADAMTS20 Silent p.S277S 0.47 TCGA-EE-A3JA-06 12 47160510 47160510 C T SLC38A4 Missense_Mutation p.D540N 0.47 tolerated(1) benign(0) TCGA-EE-A3JA-06 12 47630056 47630056 C T PCED1B Missense_Mutation p.R404C 0.35 tolerated(0.18) benign(0) TCGA-EE-A3JA-06 12 48132950 48132950 G A RAPGEF3 Missense_Mutation p.P813S 0.39 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JA-06 12 48391659 48391659 C T COL2A1 Missense_Mutation p.E142K 0.34 unknown(0) TCGA-EE-A3JA-06 12 49919798 49919798 C T SPATS2 Silent p.N466N 0.33 TCGA-EE-A3JA-06 12 50344866 50344866 C T AQP2 Nonsense_Mutation p.R85* 0.15 TCGA-EE-A3JA-06 12 50452571 50452571 G A ASIC1 Missense_Mutation p.E8K 0.30 tolerated(0.16) benign(0.017) TCGA-EE-A3JA-06 12 5153808 5153808 C T KCNA5 Silent p.F165F 0.38 TCGA-EE-A3JA-06 12 52284863 52284863 G A ANKRD33 Missense_Mutation p.G378D 0.48 tolerated(0.12) possibly_damaging(0.866) TCGA-EE-A3JA-06 12 52863032 52863032 G A KRT6C Silent p.V503V 0.32 TCGA-EE-A3JA-06 12 52867035 52867035 C T KRT6C Missense_Mutation p.E163K 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 12 52964490 52964490 T C KRT74 Missense_Mutation p.K324R 0.40 tolerated(0.94) benign(0.308) TCGA-EE-A3JA-06 12 53345628 53345628 C T KRT18 Silent p.S312S 0.34 TCGA-EE-A3JA-06 12 53823400 53823400 C T AMHR2 Silent p.A377A 0.35 TCGA-EE-A3JA-06 12 55887015 55887015 C T OR6C68 Missense_Mutation p.S285F 0.25 deleterious_low_confidence(0) benign(0.107) TCGA-EE-A3JA-06 12 56213193 56213193 G A ORMDL2 Missense_Mutation p.R81Q 0.37 deleterious(0.04) benign(0.081) TCGA-EE-A3JA-06 12 56230754 56230754 G A MMP19 3'UTR 0.26 TCGA-EE-A3JA-06 12 56625222 56625222 C T SLC39A5 Missense_Mutation p.A55V 0.28 tolerated(0.56) benign(0.098) TCGA-EE-A3JA-06 12 56823952 56823952 G A TIMELESS Silent p.F341F 0.38 TCGA-EE-A3JA-06 12 5687656 5687656 G A ANO2 Silent p.F754F 0.46 TCGA-EE-A3JA-06 12 57868238 57868238 C T ARHGAP9 Missense_Mutation p.G584E 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 12 58009767 58009767 C T ARHGEF25 Nonsense_Mutation p.Q502* 0.36 TCGA-EE-A3JA-06 12 6421333 6421333 G A PLEKHG6 5'UTR 0.42 TCGA-EE-A3JA-06 12 66703764 66703764 C T HELB Silent p.F352F 0.37 TCGA-EE-A3JA-06 12 670581 670581 A C B4GALNT3 Silent p.R987R 0.42 TCGA-EE-A3JA-06 12 67699378 67699378 T A CAND1 Missense_Mutation p.L644M 0.40 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A3JA-06 12 6941017 6941017 T C LEPREL2 Missense_Mutation p.L383P 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JA-06 12 6975226 6975226 G A USP5 Silent p.Q854Q 0.23 TCGA-EE-A3JA-06 12 70087518 70087518 G A BEST3 Silent p.I139I 0.22 TCGA-EE-A3JA-06 12 7028903 7028903 C T ENO2 Nonsense_Mutation p.Q281* 0.41 TCGA-EE-A3JA-06 12 70932086 70932086 G A PTPRB Intron 0.41 TCGA-EE-A3JA-06 12 71551503 71551503 C T TSPAN8 5'UTR 0.35 TCGA-EE-A3JA-06 12 7651486 7651486 C T CD163 Silent p.E252E 0.33 TCGA-EE-A3JA-06 12 76791674 76791674 G A OSBPL8 Missense_Mutation p.R158C 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 12 7882189 7882189 C T CLEC4C 3'UTR 0.28 TCGA-EE-A3JA-06 12 79813092 79813092 C T SYT1 Intron 0.33 TCGA-EE-A3JA-06 12 88376927 88376927 C T C12orf50 Missense_Mutation p.R391Q 0.34 deleterious(0.01) benign(0.211) TCGA-EE-A3JA-06 13 110807629 110807629 C T COL4A1 Splice_Site p.X1585_splice 0.52 TCGA-EE-A3JA-06 13 19751676 19751676 G A TUBA3C Silent p.F149F 0.53 TCGA-EE-A3JA-06 13 20796893 20796893 C T GJB6 Missense_Mutation p.E243K 0.47 tolerated(0.26) benign(0.094) TCGA-EE-A3JA-06 13 20797593 20797593 G A GJB6 Silent p.F9F 0.24 TCGA-EE-A3JA-06 13 21396374 21396374 G A XPO4 Missense_Mutation p.L299F 0.52 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A3JA-06 13 24893010 24893010 G A C1QTNF9 Missense_Mutation p.G74E 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 13 25262537 25262537 G A ATP12A Silent p.E103E 0.55 TCGA-EE-A3JA-06 13 25404711 25404711 G A RNF17 Missense_Mutation p.D779N 0.53 deleterious(0.02) probably_damaging(0.989) TCGA-EE-A3JA-06 13 28908228 28908228 G A FLT1 Nonsense_Mutation p.Q843* 0.53 TCGA-EE-A3JA-06 13 28963961 28963961 G A FLT1 Silent p.I647I 0.22 TCGA-EE-A3JA-06 13 29599687 29599687 G A MTUS2 Silent p.L294L 0.27 TCGA-EE-A3JA-06 13 31233414 31233414 C T USPL1 Missense_Mutation p.S1067F 0.26 deleterious(0) benign(0.221) TCGA-EE-A3JA-06 13 36788690 36788690 G A SOHLH2 Intron 0.61 TCGA-EE-A3JA-06 13 97484819 97484819 G A HS6ST3 Silent p.G261G 0.24 TCGA-EE-A3JA-06 14 100173997 100173997 C T CYP46A1 Silent p.S225S 0.36 TCGA-EE-A3JA-06 14 100992261 100992261 C T WDR25 Missense_Mutation p.R386W 0.42 deleterious(0.04) possibly_damaging(0.517) TCGA-EE-A3JA-06 14 101447347 101447347 G A SNORD114-20 RNA 0.19 TCGA-EE-A3JA-06 14 101498354 101498354 C T MIR543 RNA 0.31 TCGA-EE-A3JA-06 14 105352963 105352963 C T CEP170B Missense_Mutation p.S796F 0.32 deleterious(0) benign(0.135) TCGA-EE-A3JA-06 14 105420451 105420451 A C AHNAK2 Missense_Mutation p.M446R 0.28 benign(0.054) TCGA-EE-A3JA-06 14 106174252 106174252 G A IGHA1 Silent p.L179L 0.50 TCGA-EE-A3JA-06 14 106321789 106321789 G A IGHM Silent p.L149L 0.45 TCGA-EE-A3JA-06 14 106725369 106725369 C T IGHV3-23 Silent p.G61G 0.38 TCGA-EE-A3JA-06 14 106994082 106994082 C T IGHV3-48 Missense_Mutation p.G28E 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-EE-A3JA-06 14 107178951 107178951 C T IGHV2-70 Missense_Mutation p.D76N 0.43 deleterious(0.04) benign(0.048) TCGA-EE-A3JA-06 14 20528249 20528249 G A OR4L1 Missense_Mutation p.G16R 0.30 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JA-06 14 20586509 20586509 C T OR4K17 Missense_Mutation p.P315L 0.36 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JA-06 14 20665675 20665675 G A OR11G2 Missense_Mutation p.G61R 0.35 tolerated(0.23) benign(0.02) TCGA-EE-A3JA-06 14 20665886 20665886 C T OR11G2 Missense_Mutation p.S131L 0.41 deleterious(0) possibly_damaging(0.767) TCGA-EE-A3JA-06 14 22090620 22090620 C T TRAV1-1 Missense_Mutation p.R76C 0.35 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3JA-06 14 22237230 22237230 G A TRAV6 Missense_Mutation p.V103I 0.31 tolerated(0.14) possibly_damaging(0.852) TCGA-EE-A3JA-06 14 22280073 22280073 G A TRAV9-1 Missense_Mutation p.E88K 0.39 tolerated(0.58) benign(0.031) TCGA-EE-A3JA-06 14 22386389 22386389 G A TRAV13-2 5'UTR 0.42 TCGA-EE-A3JA-06 14 22447209 22447209 C T TRAV8-6 Nonsense_Mutation p.Q64* 0.30 TCGA-EE-A3JA-06 14 22539336 22539336 C T TRAV22 Silent p.L66L 0.41 TCGA-EE-A3JA-06 14 22600803 22600803 C G TRAV8-7 Missense_Mutation p.L50V 0.48 deleterious(0.01) possibly_damaging(0.774) TCGA-EE-A3JA-06 14 23518256 23518256 G A CDH24 Missense_Mutation p.T647I 0.12 tolerated(0.26) benign(0.149) TCGA-EE-A3JA-06 14 23530677 23530677 C T ACIN1 Missense_Mutation p.R1143Q 0.41 probably_damaging(0.978) TCGA-EE-A3JA-06 14 23883076 23883076 G A MYH7 Silent p.S1894S 0.36 TCGA-EE-A3JA-06 14 23884344 23884344 C T MYH7 Missense_Mutation p.G1807S 0.43 deleterious(0.01) probably_damaging(0.921) TCGA-EE-A3JA-06 14 24805566 24805566 C T RIPK3 Missense_Mutation p.V458M 0.30 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JA-06 14 24878920 24878920 C T NYNRIN Silent p.P640P 0.36 TCGA-EE-A3JA-06 14 33291018 33291018 C T AKAP6 Silent p.T1333T 0.32 TCGA-EE-A3JA-06 14 38723753 38723753 C T CLEC14A 3'UTR 0.37 TCGA-EE-A3JA-06 14 45603623 45603623 C T FKBP3 Missense_Mutation p.E13K 0.36 deleterious(0) benign(0.424) TCGA-EE-A3JA-06 14 63174922 63174922 C T KCNH5 Silent p.Q757Q 0.32 TCGA-EE-A3JA-06 14 64488725 64488725 C T SYNE2 Missense_Mutation p.H1835Y 0.30 probably_damaging(0.999) TCGA-EE-A3JA-06 14 65246619 65246619 C T SPTB Missense_Mutation p.E1433K 0.25 tolerated(1) benign(0.001) TCGA-EE-A3JA-06 14 70420239 70420239 C T SMOC1 Missense_Mutation p.S123F 0.28 deleterious(0.01) possibly_damaging(0.576) TCGA-EE-A3JA-06 14 70477663 70477663 G A SMOC1 Missense_Mutation p.R286H 0.38 deleterious(0.02) benign(0.024) TCGA-EE-A3JA-06 14 70518819 70518819 C T SLC8A3 Missense_Mutation p.R640K 0.45 tolerated(0.86) benign(0.001) TCGA-EE-A3JA-06 14 70634325 70634325 C T SLC8A3 Missense_Mutation p.G272E 0.46 deleterious(0) possibly_damaging(0.585) TCGA-EE-A3JA-06 14 70925420 70925420 G A ADAM21 Missense_Mutation p.E402K 0.34 tolerated(0.56) benign(0.001) TCGA-EE-A3JA-06 14 71206851 71206851 G T MAP3K9 Missense_Mutation p.S533Y 0.36 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JA-06 14 73490925 73490925 T A ZFYVE1 Missense_Mutation p.N98Y 0.38 deleterious(0.01) possibly_damaging(0.55) TCGA-EE-A3JA-06 14 77297636 77297636 G A C14orf166B Missense_Mutation p.R103Q 0.35 tolerated(0.18) possibly_damaging(0.691) TCGA-EE-A3JA-06 14 77844382 77844382 G A SAMD15 Silent p.E207E 0.39 TCGA-EE-A3JA-06 14 88904658 88904658 C T SPATA7 Silent p.S564S 0.37 TCGA-EE-A3JA-06 14 89039314 89039314 C T ZC3H14 Missense_Mutation p.P275L 0.45 tolerated(0.08) probably_damaging(1) TCGA-EE-A3JA-06 14 89202882 89202882 C T EML5 Missense_Mutation p.R292Q 0.37 tolerated(0.41) benign(0.013) TCGA-EE-A3JA-06 14 91747817 91747817 G A CCDC88C Silent p.P1561P 0.29 TCGA-EE-A3JA-06 14 94044364 94044364 G A UNC79 Missense_Mutation p.M619I 0.38 tolerated(0.1) benign(0.046) TCGA-EE-A3JA-06 14 94048566 94048566 G A UNC79 Silent p.L716L 0.25 TCGA-EE-A3JA-06 14 96730172 96730172 C T BDKRB1 Silent p.G51G 0.26 TCGA-EE-A3JA-06 15 20588709 20588709 C T HERC2P3 Intron 0.14 TCGA-EE-A3JA-06 15 20743926 20743926 C T GOLGA6L6 Silent p.R122R 0.75 TCGA-EE-A3JA-06 15 22990188 22990188 C T CYFIP1 Silent p.V936V 0.38 TCGA-EE-A3JA-06 15 23811776 23811776 G A MKRN3 Missense_Mutation p.E283K 0.34 deleterious(0.02) benign(0.165) TCGA-EE-A3JA-06 15 24921455 24921455 G A NPAP1 Silent p.E147E 0.21 TCGA-EE-A3JA-06 15 24921836 24921836 G A NPAP1 Silent p.Q274Q 0.38 TCGA-EE-A3JA-06 15 25327995 25327995 G A SNORD116-16 RNA 0.32 TCGA-EE-A3JA-06 15 25442776 25442776 C T SNORD115-15 RNA 0.33 TCGA-EE-A3JA-06 15 25483187 25483187 C T SNORD115-37 RNA 0.35 TCGA-EE-A3JA-06 15 26866489 26866489 G A GABRB3 Missense_Mutation p.P145S 0.32 tolerated(0.1) probably_damaging(1) TCGA-EE-A3JA-06 15 28356892 28356892 G A HERC2 3'UTR 0.49 TCGA-EE-A3JA-06 15 34130445 34130445 C T RYR3 Silent p.F4088F 0.32 TCGA-EE-A3JA-06 15 34546782 34546782 G A SLC12A6 Silent p.I295I 0.24 TCGA-EE-A3JA-06 15 34657825 34657825 A G LPCAT4 Silent p.F64F 0.23 TCGA-EE-A3JA-06 15 41859614 41859614 C T TYRO3 Silent p.P280P 0.22 TCGA-EE-A3JA-06 15 42107506 42107506 C T MAPKBP1 Missense_Mutation p.S413F 0.30 deleterious(0) possibly_damaging(0.671) TCGA-EE-A3JA-06 15 42280289 42280289 C T PLA2G4E Missense_Mutation p.E597K 0.33 deleterious(0.04) possibly_damaging(0.796) TCGA-EE-A3JA-06 15 42459594 42459594 G A VPS39 Missense_Mutation p.H459Y 0.33 deleterious(0.02) possibly_damaging(0.628) TCGA-EE-A3JA-06 15 42652221 42652221 T A CAPN3 Missense_Mutation p.V73D 0.37 tolerated(0.11) benign(0.221) TCGA-EE-A3JA-06 15 43888773 43888773 G A CKMT1B Intron 0.29 TCGA-EE-A3JA-06 15 44921560 44921560 C T SPG11 Missense_Mutation p.D588N 0.58 tolerated(0.26) probably_damaging(0.981) TCGA-EE-A3JA-06 15 45400356 45400356 C T DUOX2 Missense_Mutation p.G488E 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 15 45400357 45400357 C T DUOX2 Missense_Mutation p.G488R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 15 50494789 50494789 C T SLC27A2 Missense_Mutation p.P265L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 15 51350173 51350173 G A TNFAIP8L3 Missense_Mutation p.L262F 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 15 51975487 51975487 G A SCG3 Missense_Mutation p.E85K 0.35 tolerated_low_confidence(0.13) benign(0.003) TCGA-EE-A3JA-06 15 54841844 54841844 G A UNC13C Missense_Mutation p.M1944I 0.38 deleterious_low_confidence(0.02) benign(0.383) TCGA-EE-A3JA-06 15 58861035 58861035 G A LIPC 3'UTR 0.14 TCGA-EE-A3JA-06 15 68468991 68468991 G A PIAS1 Missense_Mutation p.G494S 0.21 tolerated(0.06) benign(0.041) TCGA-EE-A3JA-06 15 71403552 71403552 G A CT62 Missense_Mutation p.P117S 0.33 tolerated_low_confidence(0.12) unknown(0) TCGA-EE-A3JA-06 15 72105876 72105876 G A CTD-2524L6.3 5'Flank 0.29 TCGA-EE-A3JA-06 15 75631649 75631649 C T COMMD4 Missense_Mutation p.P116S 0.21 tolerated(0.74) benign(0.003) TCGA-EE-A3JA-06 15 75684868 75684868 C T SIN3A Missense_Mutation p.G856S 0.39 tolerated(0.15) benign(0.408) TCGA-EE-A3JA-06 15 75816559 75816559 G A PTPN9 Silent p.F96F 0.36 TCGA-EE-A3JA-06 15 77756589 77756589 C T HMG20A Missense_Mutation p.H33Y 0.36 tolerated_low_confidence(0.09) benign(0.099) TCGA-EE-A3JA-06 15 81172099 81172099 G A KIAA1199 Missense_Mutation p.R95Q 0.36 tolerated(0.06) possibly_damaging(0.795) TCGA-EE-A3JA-06 15 86801252 86801252 G A AGBL1 Missense_Mutation p.G274E 0.35 tolerated(1) benign(0.035) TCGA-EE-A3JA-06 15 89835919 89835919 G A FANCI Missense_Mutation p.D665N 0.28 tolerated(0.07) benign(0.34) TCGA-EE-A3JA-06 15 90244977 90244977 G A WDR93 5'UTR 0.26 TCGA-EE-A3JA-06 15 90784905 90784905 C T GDPGP1 Silent p.F255F 0.34 TCGA-EE-A3JA-06 15 97328288 97328288 C T SPATA8 Missense_Mutation p.P87S 0.37 tolerated_low_confidence(0.51) possibly_damaging(0.803) TCGA-EE-A3JA-06 15 97328289 97328289 C T SPATA8 Missense_Mutation p.P87L 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-EE-A3JA-06 16 111912 111912 G A RHBDF1 Silent p.F364F 0.44 TCGA-EE-A3JA-06 16 1392722 1392722 G A BAIAP3 Silent p.R391R 0.31 TCGA-EE-A3JA-06 16 20322505 20322505 G A GP2 3'UTR 0.49 TCGA-EE-A3JA-06 16 20480926 20480926 G A ACSM2A Missense_Mutation p.D161N 0.42 deleterious(0.03) possibly_damaging(0.794) TCGA-EE-A3JA-06 16 20498051 20498051 C T ACSM2A 3'UTR 0.41 TCGA-EE-A3JA-06 16 20673126 20673126 C T ACSM1 Missense_Mutation p.D328N 0.42 tolerated(0.17) benign(0.001) TCGA-EE-A3JA-06 16 20974661 20974661 G A DNAH3 Silent p.S3515S 0.27 TCGA-EE-A3JA-06 16 20986719 20986719 C T DNAH3 Missense_Mutation p.E2699K 0.41 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A3JA-06 16 20999054 20999054 C T DNAH3 Silent p.V2281V 0.25 TCGA-EE-A3JA-06 16 2121513 2121513 C T TSC2 Silent p.A614A 0.62 TCGA-EE-A3JA-06 16 2152832 2152832 G A PKD1 Silent p.T2977T 0.37 TCGA-EE-A3JA-06 16 22278176 22278176 C T EEF2K Silent p.I581I 0.32 TCGA-EE-A3JA-06 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.42 TCGA-EE-A3JA-06 16 2546107 2546107 C T RP11-20I23.1 5'UTR 0.34 TCGA-EE-A3JA-06 16 26147159 26147159 C T HS3ST4 Missense_Mutation p.L321F 0.33 tolerated(0.09) probably_damaging(0.991) TCGA-EE-A3JA-06 16 27751729 27751729 T C KIAA0556 Missense_Mutation p.V704A 0.35 tolerated(1) benign(0) TCGA-EE-A3JA-06 16 28489124 28489124 G A CLN3 Silent p.I377I 0.47 TCGA-EE-A3JA-06 16 30199760 30199760 G A CORO1A Missense_Mutation p.G382S 0.36 deleterious(0) possibly_damaging(0.905) TCGA-EE-A3JA-06 16 30735796 30735796 C T SRCAP Missense_Mutation p.A1684V 0.30 possibly_damaging(0.676) TCGA-EE-A3JA-06 16 30747894 30747894 C T SRCAP Silent p.F2319F 0.36 TCGA-EE-A3JA-06 16 3304437 3304437 C T MEFV Missense_Mutation p.G211R 0.22 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JA-06 16 3406126 3406126 C T OR2C1 Silent p.F62F 0.43 TCGA-EE-A3JA-06 16 47627450 47627450 C T PHKB Missense_Mutation p.L370F 0.30 deleterious(0.01) possibly_damaging(0.853) TCGA-EE-A3JA-06 16 50362591 50362591 G A BRD7 Missense_Mutation p.P359L 0.21 tolerated(0.28) probably_damaging(0.984) TCGA-EE-A3JA-06 16 50667138 50667138 C T NKD1 Missense_Mutation p.P287S 0.40 tolerated(0.81) benign(0.009) TCGA-EE-A3JA-06 16 52484400 52484400 G A TOX3 Missense_Mutation p.S156F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-EE-A3JA-06 16 56396526 56396526 G A AMFR 3'UTR 0.33 TCGA-EE-A3JA-06 16 56518646 56518646 G A BBS2 3'UTR 0.42 TCGA-EE-A3JA-06 16 57792672 57792672 A G KIFC3 3'UTR 0.45 TCGA-EE-A3JA-06 16 57954438 57954438 G A CNGB1 Missense_Mutation p.R552C 0.35 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JA-06 16 58313613 58313613 C T CCDC113 Missense_Mutation p.R356C 0.36 tolerated(0.06) benign(0.188) TCGA-EE-A3JA-06 16 58575454 58575454 G A CNOT1 Missense_Mutation p.P1584L 0.35 deleterious(0) benign(0.078) TCGA-EE-A3JA-06 16 633614 633614 C T PIGQ Missense_Mutation p.P755S 0.40 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A3JA-06 16 66622018 66622018 A G CMTM2 Missense_Mutation p.K248R 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A3JA-06 16 66945163 66945163 C T CDH16 Missense_Mutation p.E616K 0.25 tolerated(0.18) benign(0.012) TCGA-EE-A3JA-06 16 67235303 67235303 C T ELMO3 Missense_Mutation p.L307F 0.39 tolerated(0.08) benign(0.114) TCGA-EE-A3JA-06 16 67416106 67416106 G A LRRC36 Silent p.L667L 0.39 TCGA-EE-A3JA-06 16 68112356 68112356 C T DUS2 Silent p.R393R 0.34 TCGA-EE-A3JA-06 16 68598497 68598497 C T ZFP90 Missense_Mutation p.H603Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 16 69369170 69369170 G A COG8 Missense_Mutation p.P223S 0.34 deleterious(0) probably_damaging(0.971) TCGA-EE-A3JA-06 16 70852388 70852388 C T HYDIN Missense_Mutation p.E4839K 0.15 possibly_damaging(0.81) TCGA-EE-A3JA-06 16 70893991 70893991 G A HYDIN Missense_Mutation p.H4037Y 0.27 possibly_damaging(0.607) TCGA-EE-A3JA-06 16 71674812 71674812 G A MARVELD3 Missense_Mutation p.G372D 0.25 tolerated(0.07) possibly_damaging(0.881) TCGA-EE-A3JA-06 16 72992340 72992340 G A ZFHX3 Missense_Mutation p.R569C 0.40 possibly_damaging(0.563) TCGA-EE-A3JA-06 16 76528873 76528873 C T CNTNAP4 Missense_Mutation p.S643L 0.45 tolerated(1) benign(0) TCGA-EE-A3JA-06 16 77317924 77317924 G A ADAMTS18 Missense_Mutation p.P1199S 0.32 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JA-06 16 80584431 80584431 C T DYNLRB2 Silent p.I89I 0.37 TCGA-EE-A3JA-06 16 81199444 81199444 C T PKD1L2 3'Flank 0.41 TCGA-EE-A3JA-06 16 81253736 81253736 G A PKD1L2 Silent p.S80S 0.42 TCGA-EE-A3JA-06 16 81324154 81324154 C T BCMO1 Missense_Mutation p.S539F 0.35 deleterious_low_confidence(0.02) benign(0.259) TCGA-EE-A3JA-06 16 84183923 84183923 G A DNAAF1 Missense_Mutation p.D110N 0.38 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 16 85952307 85952307 C T IRF8 Missense_Mutation p.R296C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 16 87367551 87367551 G A FBXO31 Silent p.F446F 0.47 TCGA-EE-A3JA-06 16 89349805 89349805 C T ANKRD11 Missense_Mutation p.D1049N 0.36 possibly_damaging(0.627) TCGA-EE-A3JA-06 16 89964979 89964980 CC T TCF25 Frame_Shift_Del p.A346Vfs*6 0.20 TCGA-EE-A3JA-06 16 9858006 9858006 G A GRIN2A Missense_Mutation p.P1132L 0.36 deleterious(0.01) possibly_damaging(0.486) TCGA-EE-A3JA-06 17 10366251 10366251 G A MYH4 Silent p.F313F 0.40 TCGA-EE-A3JA-06 17 10401153 10401153 C T MYH1 Silent p.T1421T 0.24 TCGA-EE-A3JA-06 17 10406506 10406506 G A MYH1 Silent p.I917I 0.42 TCGA-EE-A3JA-06 17 10435015 10435015 C T MYH2 Missense_Mutation p.E878K 0.28 deleterious(0.03) possibly_damaging(0.562) TCGA-EE-A3JA-06 17 10590151 10590151 G A SCO1 Missense_Mutation p.P222S 0.20 deleterious(0.02) possibly_damaging(0.813) TCGA-EE-A3JA-06 17 11648316 11648316 G A DNAH9 Missense_Mutation p.R2105Q 0.25 possibly_damaging(0.905) TCGA-EE-A3JA-06 17 11806119 11806119 C T DNAH9 Silent p.S3830S 0.23 TCGA-EE-A3JA-06 17 1248700 1248700 G A YWHAE 3'UTR 0.11 TCGA-EE-A3JA-06 17 12819292 12819292 G A ARHGAP44 Silent p.E117E 0.20 TCGA-EE-A3JA-06 17 12898338 12898338 G A ELAC2 Missense_Mutation p.S617F 0.55 tolerated(0.64) benign(0.022) TCGA-EE-A3JA-06 17 13399547 13399547 C T HS3ST3A1 Silent p.Q396Q 0.28 TCGA-EE-A3JA-06 17 1386255 1386255 G A MYO1C Missense_Mutation p.A149V 0.31 deleterious(0) probably_damaging(0.977) TCGA-EE-A3JA-06 17 15162439 15162439 G A PMP22 Silent p.V50V 0.27 TCGA-EE-A3JA-06 17 15604484 15604484 C T ZNF286A Missense_Mutation p.S19F 0.17 tolerated(0.21) benign(0.006) TCGA-EE-A3JA-06 17 1657598 1657598 C T SERPINF2 Missense_Mutation p.L416F 0.55 tolerated(0.31) benign(0.317) TCGA-EE-A3JA-06 17 169321 169321 C T RPH3AL Missense_Mutation p.E81K 0.65 deleterious(0) probably_damaging(0.935) TCGA-EE-A3JA-06 17 17699839 17699839 C T RAI1 Missense_Mutation p.P1193S 0.53 tolerated(0.1) benign(0.024) TCGA-EE-A3JA-06 17 18061077 18061077 C T MYO15A Missense_Mutation p.P2944S 0.48 unknown(0) TCGA-EE-A3JA-06 17 26109038 26109038 G A NOS2 Intron 0.37 TCGA-EE-A3JA-06 17 26603815 26603815 G A AC061975.8 5'Flank 0.64 TCGA-EE-A3JA-06 17 27229983 27229983 C T DHRS13 5'UTR 0.52 TCGA-EE-A3JA-06 17 27285068 27285068 C T SEZ6 Silent p.V733V 0.23 TCGA-EE-A3JA-06 17 28378135 28378135 G A EFCAB5 Splice_Site p.X401_splice 0.50 TCGA-EE-A3JA-06 17 28544272 28544272 C T SLC6A4 Missense_Mutation p.G250D 0.27 tolerated(0.31) benign(0.367) TCGA-EE-A3JA-06 17 3029911 3029911 G A OR1G1 Missense_Mutation p.S312F 0.53 deleterious(0.01) possibly_damaging(0.831) TCGA-EE-A3JA-06 17 3119772 3119772 C T OR1A1 Silent p.F286F 0.18 TCGA-EE-A3JA-06 17 31267970 31267970 C T TMEM98 Missense_Mutation p.P214S 0.53 tolerated(0.72) possibly_damaging(0.641) TCGA-EE-A3JA-06 17 31322709 31322709 G A SPACA3 Missense_Mutation p.G106E 0.23 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JA-06 17 31323938 31323938 G A SPACA3 Missense_Mutation p.G141R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 17 3181591 3181591 G A OR3A2 Silent p.F213F 0.48 TCGA-EE-A3JA-06 17 32959914 32959914 C T TMEM132E Silent p.I468I 0.25 TCGA-EE-A3JA-06 17 3365798 3365798 C T SPATA22 Missense_Mutation p.G103E 0.53 tolerated(1) benign(0.002) TCGA-EE-A3JA-06 17 34190548 34190548 C T C17orf66 Missense_Mutation p.E195K 0.47 tolerated(0.29) benign(0.037) TCGA-EE-A3JA-06 17 3628742 3628742 C T GSG2 Missense_Mutation p.H505Y 0.27 tolerated(0.18) possibly_damaging(0.575) TCGA-EE-A3JA-06 17 37687013 37687013 C T CDK12 Missense_Mutation p.S1306F 0.21 probably_damaging(0.991) TCGA-EE-A3JA-06 17 38244579 38244579 G A THRA Missense_Mutation p.E270K 0.52 tolerated(0.22) benign(0.173) TCGA-EE-A3JA-06 17 39041266 39041266 C T KRT20 Missense_Mutation p.D58N 0.53 tolerated(0.59) benign(0.011) TCGA-EE-A3JA-06 17 39114788 39114788 C T KRT39 3'UTR 0.29 TCGA-EE-A3JA-06 17 39411779 39411779 C T KRTAP9-9 Missense_Mutation p.R48C 0.34 tolerated(0.06) unknown(0) TCGA-EE-A3JA-06 17 39623596 39623596 C T KRT32 5'UTR 0.50 TCGA-EE-A3JA-06 17 39768561 39768561 C A KRT16 Missense_Mutation p.R127L 0.19 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JA-06 17 41131632 41131632 C T PTGES3L-AARSD1 Missense_Mutation p.M62I 0.54 tolerated_low_confidence(0.41) benign(0.012) TCGA-EE-A3JA-06 17 41571226 41571226 C T DHX8 Missense_Mutation p.S395F 0.24 deleterious(0) possibly_damaging(0.832) TCGA-EE-A3JA-06 17 42084743 42084743 G A NAGS Silent p.L383L 0.44 TCGA-EE-A3JA-06 17 42084744 42084744 G A NAGS Missense_Mutation p.D384N 0.48 tolerated(0.08) benign(0.22) TCGA-EE-A3JA-06 17 42335499 42335499 G A SLC4A1 Silent p.F379F 0.23 TCGA-EE-A3JA-06 17 43037450 43037450 G A C1QL1 3'UTR 0.49 TCGA-EE-A3JA-06 17 43473622 43473622 G A ARHGAP27 Silent p.I393I 0.50 TCGA-EE-A3JA-06 17 45735996 45735996 G A KPNB1 Silent p.L202L 0.48 TCGA-EE-A3JA-06 17 46022934 46022934 C T PNPO Missense_Mutation p.P125S 0.24 deleterious(0.02) probably_damaging(0.985) TCGA-EE-A3JA-06 17 46189399 46189399 C T SNX11 5'UTR 0.25 TCGA-EE-A3JA-06 17 48266155 48266155 C T COL1A1 Missense_Mutation p.G1016E 0.31 unknown(0) TCGA-EE-A3JA-06 17 56429534 56429534 C T SUPT4H1 5'UTR 0.41 TCGA-EE-A3JA-06 17 56676346 56676346 G A TEX14 Missense_Mutation p.A793V 0.61 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JA-06 17 58145077 58145077 G A HEATR6 Missense_Mutation p.S319F 0.51 tolerated(0.15) benign(0.017) TCGA-EE-A3JA-06 17 58258686 58258686 G A USP32 Missense_Mutation p.S1516L 0.24 tolerated(0.16) probably_damaging(0.979) TCGA-EE-A3JA-06 17 58511493 58511493 G A C17orf64 3'Flank 0.52 TCGA-EE-A3JA-06 17 59667843 59667843 C T NACA2 3'UTR 0.17 TCGA-EE-A3JA-06 17 61666411 61666411 C T DCAF7 Silent p.A102A 0.23 TCGA-EE-A3JA-06 17 61987166 61987166 C T CSHL1 Missense_Mutation p.G192R 0.30 tolerated(0.29) probably_damaging(1) TCGA-EE-A3JA-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.41 deleterious(0) possibly_damaging(0.817) TCGA-EE-A3JA-06 17 65907493 65907493 C T BPTF Nonsense_Mutation p.R1165* 0.19 TCGA-EE-A3JA-06 17 7123354 7123354 C A ACADVL Intron 0.14 TCGA-EE-A3JA-06 17 71354263 71354263 C T SDK2 Missense_Mutation p.G1850S 0.47 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JA-06 17 72954515 72954515 C T HID1 Silent p.R433R 0.32 TCGA-EE-A3JA-06 17 7324917 7324917 G A SPEM1 Missense_Mutation p.G308E 0.31 tolerated(0.64) benign(0.001) TCGA-EE-A3JA-06 17 7350834 7350834 C T CHRNB1 Missense_Mutation p.P159S 0.16 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 17 74004679 74004679 C T EVPL Missense_Mutation p.R1536Q 0.47 deleterious(0) possibly_damaging(0.776) TCGA-EE-A3JA-06 17 74078447 74078447 G A EXOC7 3'Flank 0.50 TCGA-EE-A3JA-06 17 74078448 74078448 G A EXOC7 3'Flank 0.53 TCGA-EE-A3JA-06 17 76411014 76411014 C A PGS1 Missense_Mutation p.S486Y 0.59 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 17 7660446 7660446 G A DNAH2 Missense_Mutation p.E648K 0.27 benign(0.199) TCGA-EE-A3JA-06 17 7727622 7727622 G A DNAH2 Missense_Mutation p.G3888R 0.52 probably_damaging(0.996) TCGA-EE-A3JA-06 17 78078436 78078436 C T GAA Silent p.A17A 0.25 TCGA-EE-A3JA-06 17 78078437 78078437 C A GAA Missense_Mutation p.L18I 0.24 tolerated(0.21) benign(0.072) TCGA-EE-A3JA-06 17 7846733 7846733 C T CNTROB Nonsense_Mutation p.Q446* 0.52 TCGA-EE-A3JA-06 17 79094850 79094850 G A AATK Silent p.A962A 0.18 TCGA-EE-A3JA-06 17 79954604 79954604 C T ASPSCR1 Missense_Mutation p.S272F 0.24 deleterious(0.04) unknown(0) TCGA-EE-A3JA-06 17 8656650 8656650 C T SPDYE4 Missense_Mutation p.E215K 0.38 tolerated(0.09) benign(0.286) TCGA-EE-A3JA-06 17 9683185 9683185 C T DHRS7C Silent p.K146K 0.50 TCGA-EE-A3JA-06 17 9828803 9828803 G A GAS7 Silent p.S376S 0.22 TCGA-EE-A3JA-06 18 14763875 14763875 G A ANKRD30B Silent p.R337R 0.54 TCGA-EE-A3JA-06 18 15316703 15316703 C T RNU6-721P 3'Flank 0.33 TCGA-EE-A3JA-06 18 23612379 23612379 G A SS18 Missense_Mutation p.P405L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JA-06 18 24496717 24496717 G A CHST9 Missense_Mutation p.R280C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 18 28611067 28611067 C T DSC3 Missense_Mutation p.D76N 0.33 deleterious(0.04) benign(0.255) TCGA-EE-A3JA-06 18 28968963 28968963 G A DSG4 Missense_Mutation p.E167K 0.20 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JA-06 18 28972152 28972152 C T DSG4 Missense_Mutation p.S285L 0.20 deleterious(0) possibly_damaging(0.718) TCGA-EE-A3JA-06 18 29102112 29102112 C T DSG2 Missense_Mutation p.S197F 0.42 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JA-06 18 32948372 32948372 C T ZNF396 Silent p.K315K 0.35 TCGA-EE-A3JA-06 18 33234753 33234753 C T GALNT1 Missense_Mutation p.P43S 0.31 tolerated(0.31) benign(0.015) TCGA-EE-A3JA-06 18 40613801 40613801 G A RIT2 Silent p.F45F 0.30 TCGA-EE-A3JA-06 18 43570718 43570718 C T PSTPIP2 Missense_Mutation p.G309R 0.39 deleterious(0.03) benign(0.049) TCGA-EE-A3JA-06 18 52262207 52262207 C T DYNAP Missense_Mutation p.S58F 0.39 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A3JA-06 18 55024152 55024152 T G ST8SIA3 Missense_Mutation p.I104S 0.30 possibly_damaging(0.806) TCGA-EE-A3JA-06 18 60563057 60563057 C T PHLPP1 Missense_Mutation p.P753S 0.20 deleterious(0) probably_damaging(0.964) TCGA-EE-A3JA-06 18 60563058 60563058 C T PHLPP1 Missense_Mutation p.P753L 0.20 deleterious(0) probably_damaging(0.974) TCGA-EE-A3JA-06 18 61306490 61306490 C T SERPINB4 Missense_Mutation p.E233K 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JA-06 18 61324073 61324073 G A SERPINB3 Missense_Mutation p.L254F 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 18 61569100 61569100 C T SERPINB2 Missense_Mutation p.P221L 0.18 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JA-06 18 61570596 61570596 T A SERPINB2 3'UTR 0.29 TCGA-EE-A3JA-06 18 61585212 61585212 G A SERPINB10 Missense_Mutation p.S83N 0.55 tolerated(0.42) benign(0.006) TCGA-EE-A3JA-06 18 61654539 61654539 C T SERPINB8 3'UTR 0.12 TCGA-EE-A3JA-06 18 63477014 63477014 C T CDH7 Silent p.F95F 0.17 TCGA-EE-A3JA-06 18 63477162 63477162 G A CDH7 Missense_Mutation p.D145N 0.18 deleterious(0) possibly_damaging(0.844) TCGA-EE-A3JA-06 18 71816059 71816059 C T TIMM21 Silent p.L6L 0.21 TCGA-EE-A3JA-06 18 72347510 72347510 T C ZNF407 Missense_Mutation p.L1512S 0.51 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 18 74968155 74968155 G A GALR1 Silent p.K236K 0.32 TCGA-EE-A3JA-06 19 10071003 10071003 G A COL5A3 3'UTR 0.62 TCGA-EE-A3JA-06 19 1095370 1095370 G A POLR2E 5'UTR 0.35 TCGA-EE-A3JA-06 19 11796607 11796607 T G ZNF833P RNA 0.44 TCGA-EE-A3JA-06 19 13033582 13033582 G A FARSA Missense_Mutation p.P503S 0.34 tolerated_low_confidence(0.53) benign(0) TCGA-EE-A3JA-06 19 14263229 14263229 G A LPHN1 Silent p.L1186L 0.49 TCGA-EE-A3JA-06 19 14591232 14591232 G A GIPC1 Silent p.A180A 0.40 TCGA-EE-A3JA-06 19 14710933 14710933 C T CLEC17A Missense_Mutation p.A278V 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 19 15052928 15052928 C T OR7C2 Missense_Mutation p.P210S 0.25 deleterious_low_confidence(0.05) possibly_damaging(0.573) TCGA-EE-A3JA-06 19 15281203 15281203 C T NOTCH3 Missense_Mutation p.D1685N 0.28 tolerated(0.23) benign(0.297) TCGA-EE-A3JA-06 19 15853087 15853087 G A OR10H3 Silent p.R295R 0.30 TCGA-EE-A3JA-06 19 16034682 16034682 G A CYP4F11 Silent p.F286F 0.29 TCGA-EE-A3JA-06 19 16060459 16060459 C T OR10H4 Silent p.F214F 0.33 TCGA-EE-A3JA-06 19 1615563 1615563 G A TCF3 Intron 0.42 TCGA-EE-A3JA-06 19 16496008 16496008 A G EPS15L1 Silent p.L727L 0.43 TCGA-EE-A3JA-06 19 16926096 16926096 G A NWD1 3'UTR 0.21 TCGA-EE-A3JA-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.34 tolerated(0.09) benign(0.03) TCGA-EE-A3JA-06 19 17100465 17100465 G A CPAMD8 Silent p.S508S 0.42 TCGA-EE-A3JA-06 19 17426787 17426787 C T DDA1 Nonsense_Mutation p.Q61* 0.34 TCGA-EE-A3JA-06 19 18685735 18685735 C T UBA52 Silent p.L82L 0.24 TCGA-EE-A3JA-06 19 19758433 19758433 G A ATP13A1 Missense_Mutation p.S923F 0.29 deleterious(0.05) benign(0.104) TCGA-EE-A3JA-06 19 20727670 20727670 G A ZNF737 Missense_Mutation p.H447Y 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-EE-A3JA-06 19 22156581 22156581 G A ZNF208 Missense_Mutation p.H419Y 0.21 deleterious(0) probably_damaging(0.983) TCGA-EE-A3JA-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.21 tolerated(0.44) benign(0.023) TCGA-EE-A3JA-06 19 23405853 23405853 T A ZNF724P Missense_Mutation p.E398D 0.18 deleterious(0.04) benign(0.024) TCGA-EE-A3JA-06 19 24309759 24309759 G A ZNF254 Silent p.K319K 0.49 TCGA-EE-A3JA-06 19 3019299 3019299 C T TLE2 Missense_Mutation p.E178K 0.29 tolerated(0.12) benign(0.022) TCGA-EE-A3JA-06 19 31769157 31769157 C T TSHZ3 Silent p.E514E 0.36 TCGA-EE-A3JA-06 19 33334773 33334773 G A SLC7A9 Silent p.A354A 0.40 TCGA-EE-A3JA-06 19 34263584 34263584 G A CHST8 Silent p.R297R 0.34 TCGA-EE-A3JA-06 19 35250759 35250759 C T ZNF599 Missense_Mutation p.C316Y 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 19 35556775 35556775 G A HPN Missense_Mutation p.D352N 0.41 deleterious(0) probably_damaging(0.961) TCGA-EE-A3JA-06 19 35849993 35849993 C T FFAR3 Silent p.F67F 0.18 TCGA-EE-A3JA-06 19 36233575 36233575 G A U2AF1L4 Missense_Mutation p.S178F 0.35 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A3JA-06 19 36330225 36330225 C T NPHS1 Missense_Mutation p.R1008K 0.40 tolerated(0.97) benign(0.158) TCGA-EE-A3JA-06 19 38995000 38995000 G A RYR1 Silent p.K2689K 0.31 TCGA-EE-A3JA-06 19 40711025 40711025 C T MAP3K10 Intron 0.31 TCGA-EE-A3JA-06 19 41007838 41007838 G A SPTBN4 Missense_Mutation p.M265I 0.31 tolerated(0.08) possibly_damaging(0.459) TCGA-EE-A3JA-06 19 41268892 41268892 C T SNRPA Silent p.P171P 0.36 TCGA-EE-A3JA-06 19 41712622 41712622 G A CYP2S1 3'UTR 0.50 TCGA-EE-A3JA-06 19 4217012 4217012 G A ANKRD24 Missense_Mutation p.E619K 0.38 tolerated_low_confidence(0.1) benign(0.003) TCGA-EE-A3JA-06 19 42626516 42626516 C T POU2F2 Missense_Mutation p.G37R 0.36 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3JA-06 19 42728983 42728983 G T ZNF526 Missense_Mutation p.W143L 0.35 tolerated(0.72) benign(0) TCGA-EE-A3JA-06 19 42754644 42754644 A C ERF Missense_Mutation p.F32L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 19 43376049 43376049 C T PSG1 Silent p.L193L 0.34 TCGA-EE-A3JA-06 19 43433857 43433857 G A PSG7 Missense_Mutation p.P149L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 19 43530502 43530502 G A PSG11 Missense_Mutation p.P8L 0.16 tolerated(0.15) benign(0.033) TCGA-EE-A3JA-06 19 43699285 43699285 G A PSG4 Missense_Mutation p.P284S 0.35 tolerated(0.09) possibly_damaging(0.876) TCGA-EE-A3JA-06 19 43766276 43766276 G A PSG9 Missense_Mutation p.P149S 0.39 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JA-06 19 4537959 4537959 G A LRG1 Missense_Mutation p.S346F 0.57 deleterious(0) possibly_damaging(0.564) TCGA-EE-A3JA-06 19 46205096 46205096 C T QPCTL Silent p.P309P 0.26 TCGA-EE-A3JA-06 19 46521385 46521385 C T CCDC61 Missense_Mutation p.S473F 0.50 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A3JA-06 19 47569951 47569951 G A ZC3H4 Missense_Mutation p.R1192C 0.21 unknown(0) TCGA-EE-A3JA-06 19 47569952 47569952 G A ZC3H4 Silent p.V1191V 0.21 TCGA-EE-A3JA-06 19 48631188 48631188 C T LIG1 Silent p.V637V 0.37 TCGA-EE-A3JA-06 19 48785706 48785706 C T ZNF114 Missense_Mutation p.L30F 0.38 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A3JA-06 19 49116546 49116546 G A FAM83E Silent p.S28S 0.47 TCGA-EE-A3JA-06 19 49362198 49362198 G A PLEKHA4 Silent p.P297P 0.30 TCGA-EE-A3JA-06 19 49671179 49671179 C T TRPM4 Silent p.L91L 0.33 TCGA-EE-A3JA-06 19 50435808 50435808 C T ATF5 Missense_Mutation p.S103F 0.34 deleterious(0) possibly_damaging(0.603) TCGA-EE-A3JA-06 19 50764857 50764857 C A MYH14 Silent p.S850S 0.22 TCGA-EE-A3JA-06 19 50865262 50865262 G A NAPSA Missense_Mutation p.P105S 0.40 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 19 50865469 50865469 C T NAPSA Missense_Mutation p.G62E 0.23 tolerated(0.25) benign(0.037) TCGA-EE-A3JA-06 19 50923210 50923210 G A SPIB Missense_Mutation p.G11R 0.26 deleterious(0) possibly_damaging(0.794) TCGA-EE-A3JA-06 19 51189596 51189596 G A SHANK1 Silent p.I825I 0.40 TCGA-EE-A3JA-06 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.38 tolerated(0.21) benign(0.065) TCGA-EE-A3JA-06 19 51961520 51961520 A C SIGLEC8 Missense_Mutation p.L41R 0.37 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JA-06 19 52149614 52149614 C T SIGLEC14 Missense_Mutation p.G106E 0.28 deleterious(0.02) benign(0.091) TCGA-EE-A3JA-06 19 53086690 53086690 C T ZNF701 Missense_Mutation p.H526Y 0.42 deleterious(0.01) benign(0.005) TCGA-EE-A3JA-06 19 53345285 53345285 G A ZNF468 Missense_Mutation p.H88Y 0.34 deleterious(0) benign(0.004) TCGA-EE-A3JA-06 19 53740186 53740186 C T ZNF677 3'UTR 0.47 TCGA-EE-A3JA-06 19 54189795 54189795 G A MIR519C RNA 0.33 TCGA-EE-A3JA-06 19 54261553 54261553 G A MIR1283-2 RNA 0.42 TCGA-EE-A3JA-06 19 54313965 54313965 C T NLRP12 Silent p.E316E 0.25 TCGA-EE-A3JA-06 19 54403691 54403691 C T PRKCG Silent p.I464I 0.30 TCGA-EE-A3JA-06 19 54822892 54822892 G A LILRA5 Silent p.F168F 0.31 TCGA-EE-A3JA-06 19 55224635 55224635 C T LILRP2 RNA 0.40 TCGA-EE-A3JA-06 19 55224636 55224636 C T LILRP2 RNA 0.40 TCGA-EE-A3JA-06 19 55239314 55239314 C T KIR3DL3 Missense_Mutation p.S198F 0.26 tolerated(0.07) probably_damaging(0.957) TCGA-EE-A3JA-06 19 55286782 55286782 G A KIR2DL1 Missense_Mutation p.G179E 0.32 deleterious(0.01) possibly_damaging(0.552) TCGA-EE-A3JA-06 19 55449590 55449590 G A NLRP7 Missense_Mutation p.P651S 0.39 tolerated(0.42) benign(0.026) TCGA-EE-A3JA-06 19 55854202 55854202 C T SUV420H2 Silent p.I123I 0.35 TCGA-EE-A3JA-06 19 56466021 56466021 G A NLRP8 Silent p.Q199Q 0.27 TCGA-EE-A3JA-06 19 56466022 56466022 G A NLRP8 Missense_Mutation p.G200S 0.27 deleterious(0.02) probably_damaging(0.911) TCGA-EE-A3JA-06 19 56499295 56499295 T A NLRP8 3'UTR 0.50 TCGA-EE-A3JA-06 19 56515406 56515406 C A NLRP5 Silent p.I129I 0.39 TCGA-EE-A3JA-06 19 57176042 57176042 G A ZNF835 Silent p.F175F 0.47 TCGA-EE-A3JA-06 19 57764906 57764906 T A ZNF805 Missense_Mutation p.F240Y 0.27 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JA-06 19 57838006 57838006 C T ZNF543 Missense_Mutation p.P51S 0.35 tolerated(0.08) benign(0.176) TCGA-EE-A3JA-06 19 58477992 58477992 G A C19orf18 Missense_Mutation p.R93W 0.33 deleterious(0) benign(0.356) TCGA-EE-A3JA-06 19 7794821 7794821 C T CLEC4G Missense_Mutation p.G210D 0.44 tolerated(0.25) benign(0.166) TCGA-EE-A3JA-06 19 808727 808727 C T PTBP1 Silent p.F476F 0.50 TCGA-EE-A3JA-06 19 8160318 8160318 G A FBN3 Missense_Mutation p.S1909F 0.26 deleterious(0.01) benign(0.248) TCGA-EE-A3JA-06 19 8982210 8982210 C A MUC16 Missense_Mutation p.G14022V 0.36 probably_damaging(0.992) TCGA-EE-A3JA-06 19 9018509 9018509 C T MUC16 Silent p.L12555L 0.34 TCGA-EE-A3JA-06 19 9024197 9024197 G A MUC16 Missense_Mutation p.P12359S 0.33 benign(0.095) TCGA-EE-A3JA-06 19 9046079 9046079 G A MUC16 Missense_Mutation p.S11851F 0.34 benign(0.016) TCGA-EE-A3JA-06 19 9049915 9049915 G A MUC16 Silent p.V10572V 0.28 TCGA-EE-A3JA-06 19 9058687 9058690 CCCT TTC MUC16 Frame_Shift_Del p.R9586Efs*53 0.36 TCGA-EE-A3JA-06 19 9076735 9076735 C T MUC16 Missense_Mutation p.E3571K 0.36 unknown(0) TCGA-EE-A3JA-06 19 9080501 9080501 C T MUC16 Missense_Mutation p.G3177E 0.26 unknown(0) TCGA-EE-A3JA-06 19 9083864 9083864 G A MUC16 Missense_Mutation p.P2651S 0.41 unknown(0) TCGA-EE-A3JA-06 19 9090078 9090078 C T MUC16 Silent p.G579G 0.37 TCGA-EE-A3JA-06 19 9801776 9801776 C T ZNF812 Missense_Mutation p.E135K 0.31 tolerated(1) probably_damaging(0.991) TCGA-EE-A3JA-06 1 100588017 100588017 A T SASS6 Missense_Mutation p.L77Q 0.55 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JA-06 1 104203065 104203065 G A AMY1A Missense_Mutation p.G321D 0.20 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JA-06 1 104203219 104203219 G A AMY1A Missense_Mutation p.G341E 0.55 deleterious(0.03) possibly_damaging(0.674) TCGA-EE-A3JA-06 1 104297145 104297145 C T AMY1C Silent p.F301F 0.09 TCGA-EE-A3JA-06 1 108303444 108303444 G A VAV3 Missense_Mutation p.P327S 0.59 deleterious(0.01) possibly_damaging(0.451) TCGA-EE-A3JA-06 1 109544854 109544854 G A WDR47 Silent p.F483F 0.24 TCGA-EE-A3JA-06 1 110050768 110050768 G A AMIGO1 Missense_Mutation p.S256F 0.26 tolerated(0.06) benign(0) TCGA-EE-A3JA-06 1 110740790 110740790 C T SLC6A17 Silent p.F636F 0.66 TCGA-EE-A3JA-06 1 113232667 113232667 C T MOV10 Silent p.I261I 0.21 TCGA-EE-A3JA-06 1 114391169 114391169 C T PTPN22 Missense_Mutation p.G303E 0.46 tolerated(0.12) benign(0.106) TCGA-EE-A3JA-06 1 114636405 114636405 A T SYT6 3'UTR 0.28 TCGA-EE-A3JA-06 1 115130016 115130016 C T DENND2C Missense_Mutation p.R916Q 0.51 deleterious(0) probably_damaging(0.95) TCGA-EE-A3JA-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.55 tolerated(0.06) benign(0.006) TCGA-EE-A3JA-06 1 118558676 118558676 C T SPAG17 Missense_Mutation p.G1400E 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 1 118558773 118558773 G A SPAG17 Missense_Mutation p.H1368Y 0.55 deleterious(0.03) benign(0.221) TCGA-EE-A3JA-06 1 119427724 119427724 G A TBX15 Silent p.V374V 0.54 TCGA-EE-A3JA-06 1 119428038 119428038 G A TBX15 Missense_Mutation p.H270Y 0.32 tolerated(0.08) probably_damaging(0.968) TCGA-EE-A3JA-06 1 120293530 120293530 C T HMGCS2 Silent p.V474V 0.21 TCGA-EE-A3JA-06 1 120437504 120437504 C T ADAM30 Missense_Mutation p.G486R 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 1 120928492 120928492 G A FCGR1B Intron 0.37 TCGA-EE-A3JA-06 1 12726701 12726701 C T AADACL4 Silent p.S393S 0.66 TCGA-EE-A3JA-06 1 12854524 12854524 G A PRAMEF1 Missense_Mutation p.E250K 0.62 tolerated(0.14) benign(0.022) TCGA-EE-A3JA-06 1 144598595 144598595 C T RP11-640M9.2 RNA 0.27 TCGA-EE-A3JA-06 1 144882800 144882800 G A PDE4DIP Silent p.I1073I 0.23 TCGA-EE-A3JA-06 1 145761346 145761346 G A PDZK1 Missense_Mutation p.G387S 0.23 tolerated(0.07) possibly_damaging(0.687) TCGA-EE-A3JA-06 1 145816691 145816691 G A GPR89A Missense_Mutation p.S51F 0.31 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 1 152129383 152129383 G A RPTN Silent p.D64D 0.54 TCGA-EE-A3JA-06 1 152327317 152327317 C T FLG2 Missense_Mutation p.G982E 0.51 unknown(0) TCGA-EE-A3JA-06 1 152328842 152328842 C T FLG2 Missense_Mutation p.G474S 0.48 unknown(0) TCGA-EE-A3JA-06 1 152784959 152784959 C T LCE1B Missense_Mutation p.P13S 0.49 tolerated_low_confidence(0.31) unknown(0) TCGA-EE-A3JA-06 1 153391697 153391697 C T S100A7A Missense_Mutation p.S73F 0.50 deleterious(0.03) benign(0.077) TCGA-EE-A3JA-06 1 153507178 153507178 C T S100A6 Silent p.K89K 0.56 TCGA-EE-A3JA-06 1 153534067 153534067 C T S100A2 Missense_Mutation p.E48K 0.25 tolerated(1) benign(0.004) TCGA-EE-A3JA-06 1 153655871 153655871 G A NPR1 Missense_Mutation p.G428E 0.57 deleterious(0) possibly_damaging(0.89) TCGA-EE-A3JA-06 1 154961016 154961016 G A FLAD1 Missense_Mutation p.G270R 0.61 tolerated(0.45) benign(0.222) TCGA-EE-A3JA-06 1 156849848 156849848 C T NTRK1 Missense_Mutation p.R702C 0.23 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JA-06 1 158064610 158064610 C T KIRREL Silent p.A658A 0.51 TCGA-EE-A3JA-06 1 158389761 158389761 G A OR10K2 Missense_Mutation p.S299L 0.23 tolerated(0.4) benign(0.005) TCGA-EE-A3JA-06 1 158390564 158390564 G A OR10K2 Silent p.F31F 0.66 TCGA-EE-A3JA-06 1 158653172 158653172 C T SPTA1 Missense_Mutation p.E127K 0.49 deleterious(0.02) benign(0.226) TCGA-EE-A3JA-06 1 158670041 158670041 G A OR6K2 Silent p.I134I 0.16 TCGA-EE-A3JA-06 1 158670269 158670269 G A OR6K2 Silent p.P58P 0.24 TCGA-EE-A3JA-06 1 158735788 158735788 G A OR6N1 Missense_Mutation p.P229S 0.23 tolerated(0.06) benign(0.06) TCGA-EE-A3JA-06 1 15894599 15894599 C T DNAJC16 Missense_Mutation p.S759F 0.70 deleterious(0.04) probably_damaging(0.929) TCGA-EE-A3JA-06 1 159410126 159410126 C T OR10J1 Missense_Mutation p.P193L 0.55 deleterious(0.01) possibly_damaging(0.521) TCGA-EE-A3JA-06 1 159778089 159778089 C T FCRL6 Silent p.F58F 0.69 TCGA-EE-A3JA-06 1 159785506 159785506 G A FCRL6 3'Flank 0.40 TCGA-EE-A3JA-06 1 160111091 160111091 G A ATP1A2 Silent p.V1014V 0.19 TCGA-EE-A3JA-06 1 160171068 160171068 G A CASQ1 Missense_Mutation p.E365K 0.33 tolerated(0.23) possibly_damaging(0.54) TCGA-EE-A3JA-06 1 163044363 163044363 G A RGS4 3'UTR 0.29 TCGA-EE-A3JA-06 1 16531317 16531317 A T ARHGEF19 Missense_Mutation p.L615Q 0.69 deleterious(0.04) probably_damaging(0.99) TCGA-EE-A3JA-06 1 167793962 167793962 G A ADCY10 Silent p.I1294I 0.53 TCGA-EE-A3JA-06 1 168065881 168065881 G A GPR161 Silent p.L342L 0.27 TCGA-EE-A3JA-06 1 173545850 173545850 C T SLC9C2 Silent p.L284L 0.50 TCGA-EE-A3JA-06 1 175054588 175054588 G A TNN Missense_Mutation p.G428R 0.58 deleterious(0) possibly_damaging(0.745) TCGA-EE-A3JA-06 1 175087757 175087757 C T TNN Missense_Mutation p.S816F 0.51 deleterious(0) probably_damaging(0.98) TCGA-EE-A3JA-06 1 176525627 176525627 C T PAPPA2 Nonsense_Mutation p.R57* 0.56 TCGA-EE-A3JA-06 1 176563743 176563743 G A PAPPA2 Missense_Mutation p.D335N 0.27 deleterious(0.03) possibly_damaging(0.889) TCGA-EE-A3JA-06 1 176709260 176709260 C T PAPPA2 Missense_Mutation p.S1360F 0.39 tolerated(0.3) benign(0.004) TCGA-EE-A3JA-06 1 176709307 176709307 G A PAPPA2 Missense_Mutation p.E1376K 0.36 tolerated(0.09) benign(0.004) TCGA-EE-A3JA-06 1 176738800 176738800 C T PAPPA2 Missense_Mutation p.P1461S 0.50 deleterious(0) possibly_damaging(0.548) TCGA-EE-A3JA-06 1 176845688 176845688 C T ASTN1 Missense_Mutation p.D1150N 0.23 tolerated(0.11) possibly_damaging(0.495) TCGA-EE-A3JA-06 1 176927615 176927615 G A ASTN1 Silent p.F534F 0.61 TCGA-EE-A3JA-06 1 177250589 177250589 C T BRINP2 Silent p.I759I 0.55 TCGA-EE-A3JA-06 1 178745881 178745881 A T RALGPS2 5'UTR 0.56 TCGA-EE-A3JA-06 1 179638516 179638516 C T TDRD5 Missense_Mutation p.S946F 0.24 deleterious(0) probably_damaging(0.93) TCGA-EE-A3JA-06 1 181701924 181701924 G A CACNA1E Missense_Mutation p.G901E 0.33 tolerated(0.18) probably_damaging(0.931) TCGA-EE-A3JA-06 1 181759595 181759595 G A CACNA1E Missense_Mutation p.G1934E 0.26 tolerated(0.3) benign(0.029) TCGA-EE-A3JA-06 1 186092168 186092168 C T HMCN1 Silent p.L4105L 0.50 TCGA-EE-A3JA-06 1 190067802 190067802 C T BRINP3 Missense_Mutation p.M549I 0.22 tolerated(0.27) probably_damaging(0.914) TCGA-EE-A3JA-06 1 192998407 192998407 G A UCHL5 Missense_Mutation p.S156L 0.26 tolerated(0.05) benign(0.022) TCGA-EE-A3JA-06 1 196397261 196397261 C T KCNT2 Missense_Mutation p.E320K 0.28 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JA-06 1 196963358 196963358 G A CFHR5 Silent p.G193G 0.25 TCGA-EE-A3JA-06 1 197008410 197008410 G A F13B 3'UTR 0.35 TCGA-EE-A3JA-06 1 197404448 197404448 G A CRB1 Missense_Mutation p.G1152E 0.22 deleterious(0) probably_damaging(0.973) TCGA-EE-A3JA-06 1 198665840 198665840 G A PTPRC Splice_Site p.X34_splice 0.16 TCGA-EE-A3JA-06 1 200014571 200014571 G A NR5A2 Missense_Mutation p.G108R 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 1 200827081 200827081 C T CAMSAP2 Missense_Mutation p.P1444L 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 1 200877898 200877898 C T C1orf106 Silent p.A205A 0.46 TCGA-EE-A3JA-06 1 201009482 201009482 G A CACNA1S Silent p.S1749S 0.22 TCGA-EE-A3JA-06 1 203820193 203820193 C T ZC3H11A Silent p.V705V 0.54 TCGA-EE-A3JA-06 1 205307724 205307724 C T KLHDC8A Missense_Mutation p.G253E 0.40 deleterious(0) possibly_damaging(0.677) TCGA-EE-A3JA-06 1 216680314 216680314 T C ESRRG Silent p.K460K 0.24 TCGA-EE-A3JA-06 1 222717364 222717364 C T HHIPL2 Silent p.R163R 0.23 TCGA-EE-A3JA-06 1 223284741 223284741 C T TLR5 Missense_Mutation p.D545N 0.46 tolerated(0.19) benign(0.005) TCGA-EE-A3JA-06 1 223285838 223285838 G A TLR5 Missense_Mutation p.S179F 0.31 tolerated(0.52) benign(0) TCGA-EE-A3JA-06 1 228034027 228034027 C T PRSS38 3'UTR 0.39 TCGA-EE-A3JA-06 1 228506831 228506832 CC T OBSCN Frame_Shift_Del p.A5750Vfs*51 0.28 TCGA-EE-A3JA-06 1 228538619 228538619 G A OBSCN Missense_Mutation p.E7089K 0.52 probably_damaging(0.951) TCGA-EE-A3JA-06 1 228596752 228596752 C T TRIM17 Intron 0.57 TCGA-EE-A3JA-06 1 22903156 22903156 G A EPHA8 Silent p.K202K 0.52 TCGA-EE-A3JA-06 1 22915719 22915719 C T EPHA8 Intron 0.66 TCGA-EE-A3JA-06 1 230979413 230979413 G A C1orf198 Missense_Mutation p.A205V 0.25 deleterious(0) possibly_damaging(0.713) TCGA-EE-A3JA-06 1 23698061 23698061 G A C1orf213 3'UTR 0.75 TCGA-EE-A3JA-06 1 23756345 23756345 G A ASAP3 3'UTR 0.31 TCGA-EE-A3JA-06 1 237982366 237982366 C T RYR2 Missense_Mutation p.R4822C 0.21 probably_damaging(0.965) TCGA-EE-A3JA-06 1 240492663 240492663 C T FMN2 Silent p.I1444I 0.22 TCGA-EE-A3JA-06 1 246797840 246797840 A G CNST Missense_Mutation p.N257D 0.46 tolerated(0.06) benign(0.039) TCGA-EE-A3JA-06 1 247835968 247835968 G A OR13G1 Missense_Mutation p.P126S 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JA-06 1 247875734 247875734 G A OR6F1 Silent p.G108G 0.27 TCGA-EE-A3JA-06 1 248039768 248039768 G A TRIM58 Missense_Mutation p.D480N 0.56 tolerated_low_confidence(1) benign(0) TCGA-EE-A3JA-06 1 248129406 248129406 C T OR2AK2 Missense_Mutation p.S258F 0.71 deleterious(0.02) benign(0.059) TCGA-EE-A3JA-06 1 248344045 248344045 G A OR2M2 Missense_Mutation p.G253E 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 1 248651948 248651948 G A OR2T5 Missense_Mutation p.G20E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 1 26230178 26230178 A C STMN1 Missense_Mutation p.L47R 0.28 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JA-06 1 27622887 27622887 C T WDTC1 Missense_Mutation p.S315L 0.49 tolerated(0.36) benign(0.002) TCGA-EE-A3JA-06 1 28241079 28241079 C T RPA2 5'UTR 0.42 TCGA-EE-A3JA-06 1 2939081 2939081 G A ACTRT2 Silent p.S277S 0.57 TCGA-EE-A3JA-06 1 32745577 32745577 G A LCK Missense_Mutation p.E393K 0.59 deleterious(0.01) possibly_damaging(0.655) TCGA-EE-A3JA-06 1 32745691 32745691 C T LCK Missense_Mutation p.P403S 0.62 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JA-06 1 3407079 3407079 G A MEGF6 3'UTR 0.28 TCGA-EE-A3JA-06 1 34180370 34180370 C T CSMD2 Missense_Mutation p.D1035N 0.25 tolerated(0.39) benign(0.141) TCGA-EE-A3JA-06 1 34192284 34192284 G A CSMD2 Missense_Mutation p.P751S 0.15 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JA-06 1 34330038 34330038 G A HMGB4 Silent p.R82R 0.38 TCGA-EE-A3JA-06 1 35331759 35331759 G A DLGAP3 Silent p.S955S 0.17 TCGA-EE-A3JA-06 1 36785872 36785872 C T SH3D21 Silent p.P536P 0.29 TCGA-EE-A3JA-06 1 37337858 37337858 C T GRIK3 Missense_Mutation p.M221I 0.56 tolerated(0.85) benign(0.135) TCGA-EE-A3JA-06 1 38082197 38082197 C T RSPO1 Missense_Mutation p.G82E 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 1 39801640 39801640 C T MACF1 Intron 0.30 TCGA-EE-A3JA-06 1 41978750 41978750 G A HIVEP3 Nonsense_Mutation p.R2048* 0.23 TCGA-EE-A3JA-06 1 42048784 42048784 G A HIVEP3 Missense_Mutation p.S562F 0.56 probably_damaging(0.998) TCGA-EE-A3JA-06 1 43110413 43110413 C T CCDC30 Missense_Mutation p.R609C 0.46 deleterious(0) possibly_damaging(0.847) TCGA-EE-A3JA-06 1 43805659 43805659 G A MPL Missense_Mutation p.G239R 0.13 tolerated(0.05) benign(0.033) TCGA-EE-A3JA-06 1 43805660 43805660 G A MPL Missense_Mutation p.G239E 0.14 tolerated(0.16) benign(0.043) TCGA-EE-A3JA-06 1 44468292 44468292 G A SLC6A9 Silent p.P323P 0.50 TCGA-EE-A3JA-06 1 47395951 47395951 C T CYP4A11 Missense_Mutation p.E466K 0.24 deleterious(0.03) possibly_damaging(0.668) TCGA-EE-A3JA-06 1 47403767 47403767 C T CYP4A11 Missense_Mutation p.E80K 0.25 tolerated(0.2) benign(0.03) TCGA-EE-A3JA-06 1 47514289 47514289 G A CYP4X1 Nonsense_Mutation p.W420* 0.30 TCGA-EE-A3JA-06 1 53373571 53373571 G A ECHDC2 Silent p.V111V 0.15 TCGA-EE-A3JA-06 1 55518375 55518375 G A PCSK9 Missense_Mutation p.R237Q 0.31 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3JA-06 1 59131237 59131237 G A MYSM1 Missense_Mutation p.P700S 0.27 tolerated(0.08) benign(0.004) TCGA-EE-A3JA-06 1 62676102 62676102 C A L1TD1 Silent p.T552T 0.54 TCGA-EE-A3JA-06 1 71318539 71318539 C T PTGER3 Missense_Mutation p.E370K 0.53 tolerated(0.32) benign(0) TCGA-EE-A3JA-06 1 7907881 7907881 C T UTS2 Nonsense_Mutation p.W122* 0.63 TCGA-EE-A3JA-06 1 86959195 86959195 C T CLCA1 Silent p.L531L 0.50 TCGA-EE-A3JA-06 1 92568110 92568110 C T BTBD8 Missense_Mutation p.S143L 0.62 tolerated(0.26) benign(0.003) TCGA-EE-A3JA-06 1 94639802 94639802 C T ARHGAP29 Missense_Mutation p.E1137K 0.55 tolerated(0.59) benign(0.075) TCGA-EE-A3JA-06 1 94643672 94643672 C T ARHGAP29 Silent p.V844V 0.48 TCGA-EE-A3JA-06 1 95538398 95538398 G A ALG14 Silent p.I19I 0.24 TCGA-EE-A3JA-06 1 98058819 98058819 G A DPYD Silent p.I361I 0.19 TCGA-EE-A3JA-06 1 98348837 98348837 G A DPYD Missense_Mutation p.P45S 0.44 tolerated(0.72) benign(0) TCGA-EE-A3JA-06 20 1616161 1616161 G A SIRPG Missense_Mutation p.P278L 0.64 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 20 24565570 24565570 T G SYNDIG1 Missense_Mutation p.F187V 0.26 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 20 29976790 29976790 G A DEFB119 3'UTR 0.36 TCGA-EE-A3JA-06 20 30154057 30154057 C T HM13 Silent p.V331V 0.25 TCGA-EE-A3JA-06 20 30231314 30231314 G A COX4I2 Missense_Mutation p.V119M 0.46 tolerated(0.13) benign(0.047) TCGA-EE-A3JA-06 20 30530764 30530764 G A TTLL9 Silent p.R420R 0.24 TCGA-EE-A3JA-06 20 31609544 31609544 G A BPIFB2 Missense_Mutation p.G425E 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 20 31622000 31622000 T A BPIFB6 Missense_Mutation p.V69E 0.52 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JA-06 20 34809819 34809819 G A EPB41L1 Missense_Mutation p.E825K 0.23 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 20 37650494 37650494 C T DHX35 Silent p.G503G 0.45 TCGA-EE-A3JA-06 20 39984649 39984649 C T LPIN3 Missense_Mutation p.S593F 0.19 deleterious(0) probably_damaging(0.971) TCGA-EE-A3JA-06 20 39991690 39991690 C T EMILIN3 Silent p.R173R 0.50 TCGA-EE-A3JA-06 20 41100974 41100974 C T PTPRT Missense_Mutation p.R461Q 0.20 tolerated(0.13) benign(0.137) TCGA-EE-A3JA-06 20 42331501 42331501 C T MYBL2 Silent p.P441P 0.19 TCGA-EE-A3JA-06 20 43836308 43836308 C T SEMG1 Missense_Mutation p.H124Y 0.21 tolerated(1) benign(0.357) TCGA-EE-A3JA-06 20 44108528 44108528 T G WFDC2 Intron 0.51 TCGA-EE-A3JA-06 20 44279267 44279267 G A WFDC11 5'UTR 0.38 TCGA-EE-A3JA-06 20 45012130 45012130 G A ELMO2 Silent p.S227S 0.28 TCGA-EE-A3JA-06 20 46265205 46265205 G A NCOA3 Missense_Mutation p.G692E 0.56 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 20 47734556 47734556 C T STAU1 Missense_Mutation p.E423K 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A3JA-06 20 47835896 47835896 G A DDX27 Missense_Mutation p.V2I 0.42 tolerated_low_confidence(0.21) benign(0.097) TCGA-EE-A3JA-06 20 51872159 51872159 C T TSHZ2 Missense_Mutation p.P721L 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JA-06 20 57767174 57767174 C T ZNF831 Missense_Mutation p.S367L 0.54 deleterious(0.02) benign(0.051) TCGA-EE-A3JA-06 20 5903317 5903317 G A CHGB Missense_Mutation p.G176E 0.49 tolerated(1) possibly_damaging(0.521) TCGA-EE-A3JA-06 20 60847270 60847270 C T OSBPL2 Silent p.L116L 0.17 TCGA-EE-A3JA-06 20 61513506 61513506 G A DIDO1 Missense_Mutation p.P1268S 0.28 probably_damaging(0.996) TCGA-EE-A3JA-06 20 870942 870942 G A ANGPT4 Nonsense_Mutation p.Q127* 0.53 TCGA-EE-A3JA-06 20 9388640 9388640 C T PLCB4 Missense_Mutation p.P563L 0.21 deleterious(0) possibly_damaging(0.864) TCGA-EE-A3JA-06 20 9438100 9438100 C T PLCB4 Silent p.I1000I 0.66 TCGA-EE-A3JA-06 21 10941911 10941911 G A TPTE Silent p.I264I 0.29 TCGA-EE-A3JA-06 21 10971341 10971341 C T TPTE Missense_Mutation p.D6N 0.17 tolerated_low_confidence(0.59) benign(0) TCGA-EE-A3JA-06 21 11039096 11039096 C T BAGE2 RNA 0.05 TCGA-EE-A3JA-06 21 11039124 11039124 C T BAGE2 RNA 0.06 TCGA-EE-A3JA-06 21 11058278 11058278 C T BAGE2 RNA 0.04 TCGA-EE-A3JA-06 21 15537690 15537690 T C LIPI Missense_Mutation p.N273S 0.41 deleterious(0.02) benign(0.009) TCGA-EE-A3JA-06 21 16337512 16337512 G A NRIP1 Missense_Mutation p.S1001L 0.15 tolerated(0.14) benign(0.145) TCGA-EE-A3JA-06 21 32185366 32185366 G A KRTAP8-1 Missense_Mutation p.S58L 0.26 deleterious_low_confidence(0.03) benign(0) TCGA-EE-A3JA-06 21 32496853 32496853 G A TIAM1 Silent p.A1431A 0.35 TCGA-EE-A3JA-06 21 38572549 38572549 C T TTC3 Missense_Mutation p.S1956F 0.27 deleterious(0.01) possibly_damaging(0.905) TCGA-EE-A3JA-06 21 39426840 39426840 C T DSCR4 3'UTR 0.47 TCGA-EE-A3JA-06 21 41465764 41465764 G A DSCAM Missense_Mutation p.S1245F 0.32 tolerated(1) benign(0.002) TCGA-EE-A3JA-06 21 42817404 42817404 C T MX1 Silent p.I346I 0.38 TCGA-EE-A3JA-06 21 43795855 43795855 G A TMPRSS3 Silent p.S439S 0.39 TCGA-EE-A3JA-06 21 43795856 43795856 G A TMPRSS3 Missense_Mutation p.S439F 0.40 tolerated(0.69) possibly_damaging(0.675) TCGA-EE-A3JA-06 21 43896032 43896032 C T RSPH1 Missense_Mutation p.E285K 0.34 deleterious_low_confidence(0.01) benign(0.411) TCGA-EE-A3JA-06 21 45379525 45379525 C T AGPAT3 5'UTR 0.44 TCGA-EE-A3JA-06 21 45746145 45746145 C T PFKL Silent p.F731F 0.39 TCGA-EE-A3JA-06 21 46012061 46012061 G A KRTAP10-6 Missense_Mutation p.S102F 0.20 deleterious(0.02) unknown(0) TCGA-EE-A3JA-06 21 46058075 46058075 G A KRTAP10-10 Silent p.Q247Q 0.34 TCGA-EE-A3JA-06 21 46077868 46077868 C T KRTAP12-3 5'UTR 0.40 TCGA-EE-A3JA-06 21 47556881 47556881 C T FTCD Intron 0.21 TCGA-EE-A3JA-06 22 17600953 17600953 G A CECR6 Silent p.T355T 0.36 TCGA-EE-A3JA-06 22 18609535 18609535 C T TUBA8 Missense_Mutation p.R264C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3JA-06 22 18613813 18613813 G A TUBA8 Silent p.E420E 0.27 TCGA-EE-A3JA-06 22 18650086 18650086 C T USP18 Silent p.I155I 0.43 TCGA-EE-A3JA-06 22 19767001 19767001 C T GNB1L 3'Flank 0.33 TCGA-EE-A3JA-06 22 23252767 23252767 G A IGLJ4 Silent p.L8L 0.27 TCGA-EE-A3JA-06 22 26291180 26291180 A T MYO18B Missense_Mutation p.K1534M 0.56 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 22 29834700 29834700 G A RFPL1 5'UTR 0.31 TCGA-EE-A3JA-06 22 32072956 32072956 G A PRR14L 3'Flank 0.37 TCGA-EE-A3JA-06 22 32202147 32202147 C T DEPDC5 Silent p.F419F 0.33 TCGA-EE-A3JA-06 22 36700148 36700148 G A MYH9 Silent p.V761V 0.34 TCGA-EE-A3JA-06 22 37770908 37770908 C T ELFN2 Missense_Mutation p.G223S 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 22 38120911 38120911 C T TRIOBP Missense_Mutation p.P783L 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-EE-A3JA-06 22 38541528 38541528 G A PLA2G6 Silent p.I114I 0.34 TCGA-EE-A3JA-06 22 39627804 39627804 C T PDGFB Missense_Mutation p.M93I 0.17 tolerated(0.26) benign(0) TCGA-EE-A3JA-06 22 40015403 40015403 C T CACNA1I Missense_Mutation p.R191C 0.27 deleterious(0) probably_damaging(0.975) TCGA-EE-A3JA-06 22 40080475 40080475 C T CACNA1I Missense_Mutation p.P2000L 0.27 deleterious(0.01) possibly_damaging(0.713) TCGA-EE-A3JA-06 22 40662400 40662400 G A TNRC6B Nonsense_Mutation p.W722* 0.44 TCGA-EE-A3JA-06 22 40711325 40711325 C T TNRC6B Missense_Mutation p.P1573S 0.35 tolerated(0.44) probably_damaging(0.999) TCGA-EE-A3JA-06 22 43533179 43533179 C A MCAT Nonsense_Mutation p.E213* 0.39 TCGA-EE-A3JA-06 22 43570367 43570367 G A TTLL12 Silent p.F359F 0.27 TCGA-EE-A3JA-06 22 44645472 44645472 C T KIAA1644 3'UTR 0.36 TCGA-EE-A3JA-06 22 44681356 44681356 C T KIAA1644 Missense_Mutation p.G184E 0.29 tolerated_low_confidence(0.12) benign(0.003) TCGA-EE-A3JA-06 2 101706809 101706809 G A TBC1D8 Silent p.L49L 0.24 TCGA-EE-A3JA-06 2 102965595 102965595 G A IL1RL1 Missense_Mutation p.D392N 0.37 tolerated(0.67) benign(0.229) TCGA-EE-A3JA-06 2 103120155 103120155 C T SLC9A4 Silent p.S323S 0.35 TCGA-EE-A3JA-06 2 103136327 103136327 G A SLC9A4 Silent p.R577R 0.39 TCGA-EE-A3JA-06 2 107040657 107040657 C T RGPD3 Missense_Mutation p.E1256K 0.33 tolerated(0.17) benign(0.074) TCGA-EE-A3JA-06 2 107041240 107041240 A T RGPD3 Nonsense_Mutation p.Y1061* 0.31 TCGA-EE-A3JA-06 2 108626828 108626828 C T SLC5A7 Silent p.F418F 0.32 TCGA-EE-A3JA-06 2 108881280 108881280 G A SULT1C3 Splice_Site p.X208_splice 0.24 TCGA-EE-A3JA-06 2 109526963 109526963 C T EDAR Silent p.K252K 0.36 TCGA-EE-A3JA-06 2 11333968 11333968 G A ROCK2 Silent p.V1208V 0.22 TCGA-EE-A3JA-06 2 119750046 119750046 G A MARCO Missense_Mutation p.E416K 0.28 deleterious(0.01) unknown(0) TCGA-EE-A3JA-06 2 120383218 120383218 G A PCDP1 Silent p.E490E 0.33 TCGA-EE-A3JA-06 2 131975933 131975933 G A POTEE 5'UTR 0.28 TCGA-EE-A3JA-06 2 135160691 135160691 C T MGAT5 Missense_Mutation p.L505F 0.38 deleterious(0.01) benign(0.323) TCGA-EE-A3JA-06 2 135740840 135740840 C T MAP3K19 Intron 0.33 TCGA-EE-A3JA-06 2 135745484 135745484 C T MAP3K19 Missense_Mutation p.E320K 0.31 tolerated(0.11) benign(0.037) TCGA-EE-A3JA-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.33 tolerated(0.95) unknown(0) TCGA-EE-A3JA-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.43 TCGA-EE-A3JA-06 2 141232864 141232864 G A LRP1B Silent p.G3156G 0.35 TCGA-EE-A3JA-06 2 152279474 152279474 C T RIF1 Missense_Mutation p.S235L 0.27 deleterious(0.01) possibly_damaging(0.906) TCGA-EE-A3JA-06 2 152374874 152374874 C T NEB Silent p.L7586L 0.38 TCGA-EE-A3JA-06 2 159195525 159195525 C T CCDC148 Missense_Mutation p.D187N 0.36 tolerated(0.07) possibly_damaging(0.908) TCGA-EE-A3JA-06 2 159517772 159517772 C T PKP4 Intron 0.33 TCGA-EE-A3JA-06 2 160032940 160032940 G A TANC1 Missense_Mutation p.G605R 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 2 160742969 160742969 G A LY75-CD302 Missense_Mutation p.S292L 0.35 deleterious(0) probably_damaging(0.943) TCGA-EE-A3JA-06 2 162849873 162849873 C T DPP4 Missense_Mutation p.G741R 0.41 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JA-06 2 165551510 165551510 G A COBLL1 Missense_Mutation p.P836S 0.33 tolerated(0.54) benign(0.051) TCGA-EE-A3JA-06 2 166003308 166003308 G A SCN3A Missense_Mutation p.L538F 0.33 tolerated(0.73) possibly_damaging(0.5) TCGA-EE-A3JA-06 2 166848121 166848121 C T SCN1A Silent p.Q1888Q 0.27 TCGA-EE-A3JA-06 2 166850909 166850909 C T SCN1A Missense_Mutation p.M1533I 0.26 tolerated(0.12) benign(0.048) TCGA-EE-A3JA-06 2 166909378 166909378 C T SCN1A Silent p.T226T 0.50 TCGA-EE-A3JA-06 2 168107343 168107343 G A XIRP2 Silent p.K3147K 0.40 TCGA-EE-A3JA-06 2 169783743 169783743 T A ABCB11 Nonsense_Mutation p.K1181* 0.31 TCGA-EE-A3JA-06 2 170062080 170062080 G A LRP2 Missense_Mutation p.R2542C 0.36 probably_damaging(1) TCGA-EE-A3JA-06 2 170063416 170063416 G A LRP2 Missense_Mutation p.R2272C 0.42 probably_damaging(0.97) TCGA-EE-A3JA-06 2 171710458 171710458 G A GAD1 Missense_Mutation p.D447N 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 2 178985967 178985967 C T RBM45 Missense_Mutation p.S245F 0.34 deleterious(0.01) benign(0.441) TCGA-EE-A3JA-06 2 178985968 178985968 C T RBM45 Silent p.S245S 0.35 TCGA-EE-A3JA-06 2 179442220 179442220 G A TTN Missense_Mutation p.L22948F 0.30 TCGA-EE-A3JA-06 2 179577951 179577951 C T TTN Silent p.R8970R 0.40 TCGA-EE-A3JA-06 2 179604839 179604839 C T TTN Missense_Mutation p.G4374E 0.47 TCGA-EE-A3JA-06 2 179611502 179611502 G A TTN Intron 0.27 TCGA-EE-A3JA-06 2 179611561 179611561 A C TTN Intron 0.33 TCGA-EE-A3JA-06 2 179702223 179702223 G A CCDC141 Silent p.S1241S 0.27 TCGA-EE-A3JA-06 2 183050720 183050720 G A PDE1A Missense_Mutation p.P488L 0.31 tolerated(0.8) benign(0.008) TCGA-EE-A3JA-06 2 189872820 189872820 C T COL3A1 Silent p.P1159P 0.26 TCGA-EE-A3JA-06 2 189916147 189916147 G A COL5A2 Missense_Mutation p.R944C 0.49 unknown(0) TCGA-EE-A3JA-06 2 1926949 1926949 C T MYT1L Missense_Mutation p.D198N 0.50 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 2 202003072 202003072 C T CFLAR Intron 0.35 TCGA-EE-A3JA-06 2 207173259 207173259 C T ZDBF2 Missense_Mutation p.P1336L 0.26 deleterious(0.03) possibly_damaging(0.713) TCGA-EE-A3JA-06 2 207572058 207572058 G A DYTN Silent p.L88L 0.26 TCGA-EE-A3JA-06 2 212286822 212286822 C T ERBB4 Missense_Mutation p.M958I 0.22 deleterious(0) possibly_damaging(0.864) TCGA-EE-A3JA-06 2 212293154 212293154 G A ERBB4 Nonsense_Mutation p.Q900* 0.40 TCGA-EE-A3JA-06 2 21230950 21230950 T G APOB Missense_Mutation p.K2930N 0.43 benign(0.006) TCGA-EE-A3JA-06 2 21231343 21231343 G A APOB Silent p.S2799S 0.41 TCGA-EE-A3JA-06 2 21234304 21234304 C T APOB Silent p.G1812G 0.30 TCGA-EE-A3JA-06 2 215845251 215845251 C T ABCA12 Missense_Mutation p.E1566K 0.35 deleterious(0) possibly_damaging(0.642) TCGA-EE-A3JA-06 2 218713599 218713599 G A TNS1 Silent p.V422V 0.35 TCGA-EE-A3JA-06 2 219130370 219130370 G A AAMP Silent p.S305S 0.41 TCGA-EE-A3JA-06 2 219886908 219886908 G A CCDC108 Silent p.L988L 0.50 TCGA-EE-A3JA-06 2 220089864 220089864 T C ATG9A Missense_Mutation p.K149E 0.36 deleterious(0) probably_damaging(0.941) TCGA-EE-A3JA-06 2 220396518 220396518 G A ASIC4 Silent p.A334A 0.34 TCGA-EE-A3JA-06 2 220439993 220439993 C T INHA Silent p.Y282Y 0.27 TCGA-EE-A3JA-06 2 220501404 220501404 C T SLC4A3 Silent p.F808F 0.39 TCGA-EE-A3JA-06 2 223559162 223559162 G A MOGAT1 Missense_Mutation p.G187E 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 2 231774973 231774973 G A GPR55 Silent p.F235F 0.44 TCGA-EE-A3JA-06 2 233746933 233746933 C T NGEF Silent p.R600R 0.35 TCGA-EE-A3JA-06 2 233746934 233746934 C T NGEF Missense_Mutation p.R600K 0.36 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A3JA-06 2 233757678 233757678 C T NGEF Missense_Mutation p.D358N 0.43 tolerated(1) benign(0.003) TCGA-EE-A3JA-06 2 234669590 234669590 G A UGT1A8 Intron 0.36 TCGA-EE-A3JA-06 2 234749306 234749306 G A HJURP Missense_Mutation p.T707I 0.41 tolerated(0.5) benign(0.001) TCGA-EE-A3JA-06 2 234863777 234863777 C T TRPM8 Silent p.A415A 0.25 TCGA-EE-A3JA-06 2 240969565 240969565 G A OR6B2 Silent p.F94F 0.09 TCGA-EE-A3JA-06 2 240985208 240985208 G A OR6B3 Silent p.F94F 0.19 TCGA-EE-A3JA-06 2 242142881 242142881 G A ANO7 Missense_Mutation p.G340E 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 2 242606102 242606102 C A ATG4B Missense_Mutation p.A194E 0.65 tolerated(0.24) benign(0.342) TCGA-EE-A3JA-06 2 26531884 26531884 C T GPR113 3'Flank 0.31 TCGA-EE-A3JA-06 2 27163025 27163025 C T DPYSL5 Silent p.I358I 0.29 TCGA-EE-A3JA-06 2 27663753 27663754 - C NRBP1 Frame_Shift_Ins p.S428Lfs*8 0.22 TCGA-EE-A3JA-06 2 27800586 27800586 C T C2orf16 Nonsense_Mutation p.Q383* 0.31 TCGA-EE-A3JA-06 2 29293945 29293945 G A C2orf71 Silent p.P1061P 0.40 TCGA-EE-A3JA-06 2 29293946 29293946 G A C2orf71 Missense_Mutation p.P1061L 0.40 tolerated(0.2) benign(0.018) TCGA-EE-A3JA-06 2 31570499 31570499 C T XDH Silent p.L1055L 0.48 TCGA-EE-A3JA-06 2 40405573 40405573 G A SLC8A1 Silent p.F623F 0.33 TCGA-EE-A3JA-06 2 40655948 40655948 G A SLC8A1 Silent p.F491F 0.19 TCGA-EE-A3JA-06 2 42989949 42989949 C T OXER1 3'UTR 0.29 TCGA-EE-A3JA-06 2 61149238 61149238 C T REL Silent p.S476S 0.22 TCGA-EE-A3JA-06 2 62067293 62067293 G A FAM161A Silent p.F282F 0.38 TCGA-EE-A3JA-06 2 65541250 65541250 G A SPRED2 Silent p.I214I 0.40 TCGA-EE-A3JA-06 2 69318037 69318037 C T ANTXR1 Missense_Mutation p.T230I 0.35 deleterious(0.01) benign(0.014) TCGA-EE-A3JA-06 2 73228693 73228693 G A SFXN5 Silent p.L124L 0.26 TCGA-EE-A3JA-06 2 73678374 73678374 G A ALMS1 Missense_Mutation p.G1573R 0.27 benign(0.439) TCGA-EE-A3JA-06 2 73678375 73678375 G A ALMS1 Missense_Mutation p.G1573E 0.27 benign(0.322) TCGA-EE-A3JA-06 2 74042727 74042727 C T C2orf78 Silent p.S459S 0.45 TCGA-EE-A3JA-06 2 75099521 75099521 C T HK2 Missense_Mutation p.P157L 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JA-06 2 87049444 87049444 C T CD8B Intron 0.26 TCGA-EE-A3JA-06 2 89513011 89513011 C T IGKV1-27 Missense_Mutation p.R83Q 0.26 deleterious(0.03) benign(0.176) TCGA-EE-A3JA-06 2 90229374 90229374 C T IGKV1D-42 Missense_Mutation p.S65F 0.38 deleterious(0) possibly_damaging(0.888) TCGA-EE-A3JA-06 2 95518946 95518946 C T ANKRD20A8P Splice_Site 0.28 TCGA-EE-A3JA-06 2 99256384 99256384 G A MGAT4A Silent p.Y403Y 0.35 TCGA-EE-A3JA-06 3 10089604 10089604 C T FANCD2 Missense_Mutation p.L428F 0.35 deleterious(0.01) possibly_damaging(0.835) TCGA-EE-A3JA-06 3 101443558 101443558 G A CEP97 Missense_Mutation p.G13E 0.49 deleterious(0.04) benign(0.393) TCGA-EE-A3JA-06 3 10276145 10276145 G A IRAK2 Silent p.K425K 0.19 TCGA-EE-A3JA-06 3 10861488 10861488 C T SLC6A11 Silent p.C161C 0.24 TCGA-EE-A3JA-06 3 108719493 108719493 C T MORC1 Missense_Mutation p.E700K 0.17 tolerated(0.27) benign(0.003) TCGA-EE-A3JA-06 3 109031524 109031524 C T DPPA2 Missense_Mutation p.E17K 0.26 deleterious(0.04) benign(0.143) TCGA-EE-A3JA-06 3 109047786 109047786 G A DPPA4 Missense_Mutation p.P277S 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 3 11078575 11078575 G A SLC6A1 Missense_Mutation p.E575K 0.25 tolerated(0.62) benign(0.002) TCGA-EE-A3JA-06 3 111312560 111312560 C T ZBED2 Silent p.R163R 0.47 TCGA-EE-A3JA-06 3 111427002 111427002 C T PLCXD2 Silent p.I131I 0.28 TCGA-EE-A3JA-06 3 113377447 113377447 G A KIAA2018 Missense_Mutation p.H1028Y 0.29 possibly_damaging(0.661) TCGA-EE-A3JA-06 3 115395143 115395143 G A GAP43 Missense_Mutation p.G141E 0.57 tolerated(0.09) probably_damaging(0.99) TCGA-EE-A3JA-06 3 121388158 121388158 G A GOLGB1 Silent p.L3074L 0.20 TCGA-EE-A3JA-06 3 121445791 121445791 A G GOLGB1 Missense_Mutation p.L167P 0.30 probably_damaging(1) TCGA-EE-A3JA-06 3 121650527 121650527 C T SLC15A2 Missense_Mutation p.S569F 0.44 tolerated(0.25) benign(0.001) TCGA-EE-A3JA-06 3 12194954 12194954 G A TIMP4 3'UTR 0.47 TCGA-EE-A3JA-06 3 121980499 121980499 G A CASR Nonsense_Mutation p.W206* 0.27 TCGA-EE-A3JA-06 3 122002676 122002676 C T CASR Silent p.F635F 0.29 TCGA-EE-A3JA-06 3 122990606 122990606 G T SEC22A 3'UTR 0.31 TCGA-EE-A3JA-06 3 123348433 123348433 C T MYLK Missense_Mutation p.E1668K 0.52 deleterious(0) benign(0.146) TCGA-EE-A3JA-06 3 123512535 123512535 A T MYLK Missense_Mutation p.F52I 0.19 deleterious(0.04) benign(0.156) TCGA-EE-A3JA-06 3 124896750 124896750 A C SLC12A8 Missense_Mutation p.N153K 0.48 deleterious(0.01) benign(0.276) TCGA-EE-A3JA-06 3 126270845 126270845 G A C3orf22 Silent p.V70V 0.22 TCGA-EE-A3JA-06 3 127292608 127292608 G A TPRA1 Missense_Mutation p.S293F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 3 127642780 127642780 G A KBTBD12 Silent p.R292R 0.23 TCGA-EE-A3JA-06 3 132407935 132407935 G A NPHP3 Silent p.L956L 0.22 TCGA-EE-A3JA-06 3 133485235 133485235 C T TF Missense_Mutation p.P482S 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 3 13407591 13407591 C T NUP210 Missense_Mutation p.G596E 0.50 deleterious(0.04) benign(0.026) TCGA-EE-A3JA-06 3 13429817 13429817 C T NUP210 Missense_Mutation p.E224K 0.56 deleterious(0) possibly_damaging(0.829) TCGA-EE-A3JA-06 3 13438930 13438930 G A NUP210 Silent p.I121I 0.56 TCGA-EE-A3JA-06 3 13546028 13546028 C T HDAC11 Missense_Mutation p.L297F 0.52 deleterious(0.05) benign(0.208) TCGA-EE-A3JA-06 3 14861741 14861741 C T FGD5 Missense_Mutation p.P388L 0.22 tolerated_low_confidence(0.06) benign(0.062) TCGA-EE-A3JA-06 3 150645646 150645646 G A CLRN1 3'Flank 0.35 TCGA-EE-A3JA-06 3 154884688 154884688 T G MME Intron 0.17 TCGA-EE-A3JA-06 3 167223193 167223193 G A WDR49 Missense_Mutation p.S577L 0.49 tolerated(0.65) benign(0.004) TCGA-EE-A3JA-06 3 167240187 167240187 G A WDR49 Missense_Mutation p.S545F 0.48 deleterious(0.01) benign(0.195) TCGA-EE-A3JA-06 3 167250754 167250754 C T WDR49 Missense_Mutation p.G304R 0.57 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 3 17109539 17109539 G A PLCL2 Nonsense_Mutation p.W936* 0.21 TCGA-EE-A3JA-06 3 183217608 183217608 G A KLHL6 Missense_Mutation p.S306L 0.55 deleterious(0) benign(0.163) TCGA-EE-A3JA-06 3 183454513 183454513 C T YEATS2 Missense_Mutation p.P274S 0.52 deleterious(0) probably_damaging(0.936) TCGA-EE-A3JA-06 3 183818295 183818295 C T HTR3E Silent p.I45I 0.47 TCGA-EE-A3JA-06 3 188956522 188956522 G A TPRG1 Silent p.K101K 0.39 TCGA-EE-A3JA-06 3 189585657 189585657 C T TP63 Silent p.F306F 0.27 TCGA-EE-A3JA-06 3 190030809 190030809 G A CLDN1 Silent p.T80T 0.21 TCGA-EE-A3JA-06 3 194061912 194061912 G A CPN2 Missense_Mutation p.S507F 0.59 tolerated(0.06) possibly_damaging(0.907) TCGA-EE-A3JA-06 3 195298153 195298153 G A APOD Missense_Mutation p.S110F 0.51 tolerated(0.73) benign(0.002) TCGA-EE-A3JA-06 3 195516445 195516445 G A MUC4 Missense_Mutation p.S669F 0.43 unknown(0) TCGA-EE-A3JA-06 3 25781078 25781078 G A NGLY1 Nonsense_Mutation p.R291* 0.27 TCGA-EE-A3JA-06 3 27436557 27436557 G A SLC4A7 Missense_Mutation p.P909L 0.24 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JA-06 3 30032595 30032595 C T RBMS3 Missense_Mutation p.P401L 0.51 deleterious(0.01) benign(0.284) TCGA-EE-A3JA-06 3 30819689 30819689 G A GADL1 Silent p.F458F 0.52 TCGA-EE-A3JA-06 3 38793921 38793921 G A SCN10A Missense_Mutation p.S515L 0.30 deleterious(0.04) benign(0.104) TCGA-EE-A3JA-06 3 38835492 38835492 G A SCN10A Missense_Mutation p.P4S 0.51 deleterious(0.04) benign(0.266) TCGA-EE-A3JA-06 3 3887578 3887578 C T LRRN1 Missense_Mutation p.S418L 0.13 tolerated(0.27) benign(0) TCGA-EE-A3JA-06 3 42784475 42784475 G A CCDC13 Silent p.V300V 0.55 TCGA-EE-A3JA-06 3 42906414 42906414 G A ACKR2 Silent p.L140L 0.17 TCGA-EE-A3JA-06 3 44795030 44795030 G A KIAA1143 Missense_Mutation p.P90S 0.52 tolerated(0.13) benign(0.002) TCGA-EE-A3JA-06 3 46398980 46398980 G A CCR2 5'UTR 0.59 TCGA-EE-A3JA-06 3 46401276 46401276 C T CCR2 Silent p.L350L 0.48 TCGA-EE-A3JA-06 3 46497358 46497358 C T LTF Missense_Mutation p.G143R 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 3 46539609 46539609 G A RTP3 Silent p.V19V 0.34 TCGA-EE-A3JA-06 3 47042819 47042819 C T NBEAL2 Missense_Mutation p.P1512L 0.30 tolerated(0.26) benign(0) TCGA-EE-A3JA-06 3 49059690 49059690 C T NDUFAF3 Intron 0.55 TCGA-EE-A3JA-06 3 49168397 49168397 G A LAMB2 Missense_Mutation p.H301Y 0.64 deleterious(0.03) possibly_damaging(0.745) TCGA-EE-A3JA-06 3 51930911 51930911 C T IQCF1 Splice_Site p.X37_splice 0.26 TCGA-EE-A3JA-06 3 52472016 52472016 G A SEMA3G Missense_Mutation p.A570V 0.46 tolerated(1) benign(0.268) TCGA-EE-A3JA-06 3 57528453 57528453 G T DNAH12 Missense_Mutation p.Q49K 0.40 tolerated(0.18) benign(0.043) TCGA-EE-A3JA-06 3 62751564 62751564 A C CADPS Silent p.A179A 0.17 TCGA-EE-A3JA-06 3 68788334 68788334 C T FAM19A4 Silent p.Q101Q 0.20 TCGA-EE-A3JA-06 3 69112644 69112649 AATATG - UBA3 In_Frame_Del p.H160_I161del 0.27 TCGA-EE-A3JA-06 3 7728082 7728082 G T GRM7 Intron 0.57 TCGA-EE-A3JA-06 3 7728083 7728083 T C GRM7 Intron 0.56 TCGA-EE-A3JA-06 3 77530252 77530252 C T ROBO2 Silent p.I199I 0.60 TCGA-EE-A3JA-06 3 77693930 77693930 C T ROBO2 Missense_Mutation p.S1353F 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-EE-A3JA-06 3 78683168 78683168 G A ROBO1 Missense_Mutation p.P1133L 0.52 deleterious(0.02) benign(0.056) TCGA-EE-A3JA-06 3 97185262 97185262 G A EPHA6 Intron 0.56 TCGA-EE-A3JA-06 3 97887546 97887546 G A OR5H15 Translation_Start_Site p.M1? 0.37 deleterious(0.01) benign(0.167) TCGA-EE-A3JA-06 3 99514396 99514396 G A COL8A1 Missense_Mutation p.G551S 0.64 deleterious(0.01) unknown(0) TCGA-EE-A3JA-06 4 100052872 100052872 A T ADH4 Missense_Mutation p.V209E 0.17 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JA-06 4 100349108 100349108 C T ADH7 Missense_Mutation p.R149K 0.38 deleterious(0.01) possibly_damaging(0.779) TCGA-EE-A3JA-06 4 106155902 106155902 C T TET2 Missense_Mutation p.S268L 0.22 tolerated(0.16) benign(0.027) TCGA-EE-A3JA-06 4 109861728 109861728 C T COL25A1 Silent p.G213G 0.49 TCGA-EE-A3JA-06 4 120981287 120981287 G A MAD2L1 Missense_Mutation p.P202S 0.22 deleterious(0.03) benign(0.017) TCGA-EE-A3JA-06 4 123813469 123813469 G A FGF2 Missense_Mutation p.R262Q 0.49 deleterious(0.03) probably_damaging(0.942) TCGA-EE-A3JA-06 4 126371563 126371563 G A FAT4 Missense_Mutation p.G3131E 0.46 probably_damaging(1) TCGA-EE-A3JA-06 4 1369239 1369239 C T UVSSA Missense_Mutation p.S459F 0.30 deleterious(0.01) probably_damaging(0.957) TCGA-EE-A3JA-06 4 138442398 138442398 G A PCDH18 Missense_Mutation p.P1065S 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A3JA-06 4 138451935 138451935 G A PCDH18 Silent p.I436I 0.29 TCGA-EE-A3JA-06 4 138452990 138452990 C T PCDH18 Missense_Mutation p.E85K 0.24 tolerated(0.13) possibly_damaging(0.803) TCGA-EE-A3JA-06 4 155506751 155506751 T C FGA Silent p.E610E 0.46 TCGA-EE-A3JA-06 4 155506870 155506870 G A FGA Missense_Mutation p.P571S 0.49 tolerated(0.61) benign(0.019) TCGA-EE-A3JA-06 4 155506871 155506871 G A FGA Silent p.F570F 0.49 TCGA-EE-A3JA-06 4 155507777 155507777 C T FGA Silent p.E268E 0.53 TCGA-EE-A3JA-06 4 156135678 156135678 C T NPY2R Missense_Mutation p.P196L 0.52 tolerated(0.05) benign(0.025) TCGA-EE-A3JA-06 4 164271851 164271851 G A NPY5R Missense_Mutation p.M142I 0.20 tolerated(0.06) benign(0.009) TCGA-EE-A3JA-06 4 173873271 173873271 C T GALNTL6 Silent p.S411S 0.27 TCGA-EE-A3JA-06 4 175898638 175898638 G A ADAM29 Silent p.L654L 0.47 TCGA-EE-A3JA-06 4 178281742 178281742 C T NEIL3 Missense_Mutation p.L516F 0.25 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JA-06 4 183090455 183090455 C T MIR1305 RNA 0.44 TCGA-EE-A3JA-06 4 183635317 183635317 G A TENM3 Missense_Mutation p.G767R 0.55 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JA-06 4 183815719 183815719 G A DCTD Missense_Mutation p.S106L 0.21 tolerated(0.18) benign(0.09) TCGA-EE-A3JA-06 4 187078777 187078777 C T FAM149A Silent p.L211L 0.46 TCGA-EE-A3JA-06 4 189012615 189012615 G A TRIML2 Missense_Mutation p.S359F 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 4 189068456 189068456 C T TRIML1 Missense_Mutation p.S446F 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 4 190947577 190947577 C T FRG2 Missense_Mutation p.R98K 0.19 deleterious(0.03) possibly_damaging(0.718) TCGA-EE-A3JA-06 4 20493457 20493457 C T SLIT2 Silent p.I283I 0.23 TCGA-EE-A3JA-06 4 2661599 2661599 C T FAM193A Silent p.P230P 0.23 TCGA-EE-A3JA-06 4 3432620 3432620 C T RGS12 Missense_Mutation p.P1351L 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 4 40810325 40810325 G A NSUN7 Missense_Mutation p.R509Q 0.49 tolerated(0.12) benign(0.011) TCGA-EE-A3JA-06 4 40810326 40810326 G A NSUN7 Silent p.R509R 0.49 TCGA-EE-A3JA-06 4 40810394 40810394 G A NSUN7 Missense_Mutation p.G532E 0.41 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JA-06 4 40810395 40810395 G A NSUN7 Silent p.G532G 0.40 TCGA-EE-A3JA-06 4 42119598 42119598 G A BEND4 Silent p.I514I 0.61 TCGA-EE-A3JA-06 4 437846 437846 T A ZNF721 Missense_Mutation p.Y137F 0.29 tolerated(0.12) benign(0.126) TCGA-EE-A3JA-06 4 47593286 47593286 C T ATP10D Missense_Mutation p.S1390F 0.56 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A3JA-06 4 49046862 49046862 C T CWH43 Silent p.I621I 0.23 TCGA-EE-A3JA-06 4 49052843 49052843 T C CWH43 Silent p.S666S 0.41 TCGA-EE-A3JA-06 4 49063922 49063922 G A CWH43 3'UTR 0.17 TCGA-EE-A3JA-06 4 56448404 56448404 C T PDCL2 Missense_Mutation p.D3N 0.26 tolerated(0.22) probably_damaging(0.998) TCGA-EE-A3JA-06 4 6050615 6050615 T G JAKMIP1 Missense_Mutation p.Q666P 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JA-06 4 62599149 62599149 C T LPHN3 Missense_Mutation p.P358S 0.52 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JA-06 4 62758587 62758587 G A LPHN3 Missense_Mutation p.S497N 0.56 tolerated(0.14) benign(0.003) TCGA-EE-A3JA-06 4 6374336 6374336 G A PPP2R2C Missense_Mutation p.S180F 0.25 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JA-06 4 659046 659046 C T PDE6B Silent p.V732V 0.36 TCGA-EE-A3JA-06 4 69433498 69433498 C T UGT2B17 Silent p.Q235Q 0.71 TCGA-EE-A3JA-06 4 69433644 69433644 C T UGT2B17 Missense_Mutation p.G187R 0.82 tolerated(0.05) benign(0.258) TCGA-EE-A3JA-06 4 7716939 7716939 C T SORCS2 Missense_Mutation p.S718L 0.51 tolerated(0.24) benign(0.004) TCGA-EE-A3JA-06 4 77661463 77661463 G A SHROOM3 Missense_Mutation p.G713R 0.49 tolerated(1) benign(0) TCGA-EE-A3JA-06 4 7811370 7811370 G A AFAP1 Missense_Mutation p.S342F 0.55 deleterious(0.02) probably_damaging(0.993) TCGA-EE-A3JA-06 4 8009853 8009853 G A ABLIM2 Silent p.S517S 0.45 TCGA-EE-A3JA-06 4 81884785 81884785 C T C4orf22 3'Flank 0.33 TCGA-EE-A3JA-06 4 85742679 85742679 G A WDFY3 Silent p.A383A 0.48 TCGA-EE-A3JA-06 4 87662904 87662904 C T PTPN13 Missense_Mutation p.H808Y 0.35 tolerated(0.06) possibly_damaging(0.834) TCGA-EE-A3JA-06 4 88967890 88967890 C T PKD2 Silent p.F472F 0.22 TCGA-EE-A3JA-06 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.62 tolerated(0.54) benign(0.001) TCGA-EE-A3JA-06 5 10250002 10250002 G A FAM173B 5'Flank 0.14 TCGA-EE-A3JA-06 5 115351418 115351418 C T AQPEP Silent p.V904V 0.55 TCGA-EE-A3JA-06 5 1208886 1208886 C T SLC6A19 Silent p.I76I 0.70 TCGA-EE-A3JA-06 5 1208887 1208887 C T SLC6A19 Silent p.L77L 0.70 TCGA-EE-A3JA-06 5 121187768 121187768 C T FTMT Missense_Mutation p.P37L 0.70 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-EE-A3JA-06 5 1216763 1216763 G A SLC6A19 Silent p.G326G 0.40 TCGA-EE-A3JA-06 5 121786775 121786775 G A SNCAIP Missense_Mutation p.G745S 0.21 deleterious(0) possibly_damaging(0.682) TCGA-EE-A3JA-06 5 1255420 1255420 G A TERT Silent p.L1047L 0.39 TCGA-EE-A3JA-06 5 126781204 126781204 C T MEGF10 Silent p.L849L 0.28 TCGA-EE-A3JA-06 5 132200263 132200263 C T GDF9 5'UTR 0.58 TCGA-EE-A3JA-06 5 134785287 134785287 G A TIFAB Missense_Mutation p.R115C 0.25 tolerated(0.2) benign(0.001) TCGA-EE-A3JA-06 5 13716600 13716600 A G DNAH5 Missense_Mutation p.I4302T 0.25 benign(0.415) TCGA-EE-A3JA-06 5 137499029 137499029 G C BRD8 Missense_Mutation p.A626G 0.22 tolerated(0.58) benign(0.003) TCGA-EE-A3JA-06 5 137600087 137600087 G A GFRA3 Missense_Mutation p.S81L 0.23 tolerated(0.1) benign(0.024) TCGA-EE-A3JA-06 5 13770902 13770902 G A DNAH5 Silent p.F3187F 0.33 TCGA-EE-A3JA-06 5 13811895 13811895 A T DNAH5 Missense_Mutation p.I2423N 0.34 benign(0.308) TCGA-EE-A3JA-06 5 13920635 13920635 C T DNAH5 Missense_Mutation p.G251E 0.37 benign(0) TCGA-EE-A3JA-06 5 140209499 140209499 C T PCDHA6 Missense_Mutation p.S608L 0.51 tolerated_low_confidence(0.05) benign(0.411) TCGA-EE-A3JA-06 5 140221050 140221050 C T PCDHA8 Silent p.I48I 0.23 TCGA-EE-A3JA-06 5 140307514 140307514 C T PCDHAC1 Missense_Mutation p.S346L 0.55 tolerated(0.09) benign(0.099) TCGA-EE-A3JA-06 5 140432228 140432228 C T PCDHB1 Silent p.P391P 0.30 TCGA-EE-A3JA-06 5 140503762 140503762 G A PCDHB4 Missense_Mutation p.E728K 0.30 deleterious_low_confidence(0.02) benign(0.082) TCGA-EE-A3JA-06 5 140553578 140553578 G A PCDHB7 Missense_Mutation p.D388N 0.22 tolerated_low_confidence(0.42) benign(0.007) TCGA-EE-A3JA-06 5 140573631 140573631 C T PCDHB10 Silent p.S502S 0.26 TCGA-EE-A3JA-06 5 140588661 140588661 C T PCDHB12 Missense_Mutation p.S61L 0.21 deleterious_low_confidence(0.05) benign(0.014) TCGA-EE-A3JA-06 5 140604280 140604280 C T PCDHB14 Silent p.F401F 0.31 TCGA-EE-A3JA-06 5 140711683 140711683 G A PCDHGA1 Missense_Mutation p.D478N 0.46 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-EE-A3JA-06 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.56 deleterious(0.04) benign(0.008) TCGA-EE-A3JA-06 5 140773326 140773326 G A PCDHGA8 Missense_Mutation p.E316K 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-EE-A3JA-06 5 1409168 1409168 C T SLC6A3 Missense_Mutation p.E491K 0.76 deleterious(0) probably_damaging(0.957) TCGA-EE-A3JA-06 5 142680139 142680139 G A NR3C1 Missense_Mutation p.P554L 0.24 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JA-06 5 143586695 143586695 G A KCTD16 Missense_Mutation p.E140K 0.26 deleterious(0.01) possibly_damaging(0.493) TCGA-EE-A3JA-06 5 145442052 145442052 C T SH3RF2 Missense_Mutation p.P660S 0.60 tolerated(0.32) benign(0.009) TCGA-EE-A3JA-06 5 148388497 148388497 A G SH3TC2 Missense_Mutation p.L1132P 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 5 149240510 149240510 C T PDE6A Missense_Mutation p.G844E 0.59 tolerated(0.1) benign(0.006) TCGA-EE-A3JA-06 5 151784321 151784321 G A NMUR2 Silent p.G118G 0.29 TCGA-EE-A3JA-06 5 154396923 154396923 C T KIF4B Silent p.I1168I 0.54 TCGA-EE-A3JA-06 5 156479510 156479510 G A HAVCR1 Silent p.L179L 0.49 TCGA-EE-A3JA-06 5 156590640 156590640 C G FAM71B Missense_Mutation p.Q212H 0.59 deleterious(0.04) benign(0.071) TCGA-EE-A3JA-06 5 160059352 160059352 C T ATP10B Silent p.K468K 0.54 TCGA-EE-A3JA-06 5 167525063 167525063 G A TENM2 Missense_Mutation p.G582R 0.53 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JA-06 5 172744763 172744763 C T STC2 3'UTR 0.50 TCGA-EE-A3JA-06 5 17275866 17275866 C T BASP1 Missense_Mutation p.P181S 0.43 tolerated(0.06) benign(0.224) TCGA-EE-A3JA-06 5 175992333 175992333 C T CDHR2 Intron 0.49 TCGA-EE-A3JA-06 5 176931915 176931915 C T DOK3 Silent p.V214V 0.27 TCGA-EE-A3JA-06 5 178413575 178413575 C T GRM6 Silent p.G560G 0.49 TCGA-EE-A3JA-06 5 180039512 180039512 G C FLT4 Silent p.G1177G 0.25 TCGA-EE-A3JA-06 5 180416021 180416021 G A BTNL3 5'UTR 0.70 TCGA-EE-A3JA-06 5 23509677 23509677 G A PRDM9 Silent p.R56R 0.21 TCGA-EE-A3JA-06 5 24498562 24498562 G A CDH10 Missense_Mutation p.P487L 0.31 deleterious(0) benign(0.1) TCGA-EE-A3JA-06 5 31799634 31799634 C T PDZD2 Silent p.F93F 0.13 TCGA-EE-A3JA-06 5 31799781 31799781 C T PDZD2 Silent p.I142I 0.09 TCGA-EE-A3JA-06 5 35779280 35779280 G A SPEF2 Missense_Mutation p.E1427K 0.30 deleterious(0.03) benign(0.257) TCGA-EE-A3JA-06 5 35792540 35792540 C T SPEF2 Nonsense_Mutation p.Q1516* 0.18 TCGA-EE-A3JA-06 5 35800200 35800200 G A SPEF2 Missense_Mutation p.G1654E 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JA-06 5 35968179 35968179 G A UGT3A1 Missense_Mutation p.H85Y 0.21 tolerated(1) benign(0.001) TCGA-EE-A3JA-06 5 36039653 36039653 G A UGT3A2 Missense_Mutation p.S334F 0.14 deleterious(0.04) possibly_damaging(0.501) TCGA-EE-A3JA-06 5 36257607 36257607 C G RANBP3L Missense_Mutation p.E266Q 0.33 tolerated(0.17) benign(0.178) TCGA-EE-A3JA-06 5 38406282 38406282 G A EGFLAM Missense_Mutation p.G256E 0.12 tolerated_low_confidence(0.48) benign(0.008) TCGA-EE-A3JA-06 5 38463945 38463945 G A EGFLAM Missense_Mutation p.E971K 0.37 tolerated(0.09) probably_damaging(0.992) TCGA-EE-A3JA-06 5 38482762 38482762 C T LIFR Missense_Mutation p.E867K 0.07 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JA-06 5 38523535 38523535 C T LIFR Missense_Mutation p.E183K 0.32 tolerated(0.15) benign(0.444) TCGA-EE-A3JA-06 5 38884059 38884059 G A OSMR Silent p.G183G 0.36 TCGA-EE-A3JA-06 5 39202110 39202110 G A FYB Missense_Mutation p.S328F 0.18 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 5 40692522 40692522 A G PTGER4 3'UTR 0.27 TCGA-EE-A3JA-06 5 40998729 40998729 C T MROH2B Missense_Mutation p.E1546K 0.60 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JA-06 5 41012789 41012789 C T MROH2B Missense_Mutation p.E1011K 0.52 tolerated(0.09) possibly_damaging(0.754) TCGA-EE-A3JA-06 5 41313844 41313844 G A PLCXD3 Missense_Mutation p.R281C 0.35 deleterious(0) possibly_damaging(0.872) TCGA-EE-A3JA-06 5 41313845 41313845 G A PLCXD3 Silent p.V280V 0.36 TCGA-EE-A3JA-06 5 41313846 41313846 A T PLCXD3 Missense_Mutation p.V280D 0.38 deleterious(0) possibly_damaging(0.62) TCGA-EE-A3JA-06 5 42801480 42801480 G A CCDC152 3'UTR 0.40 TCGA-EE-A3JA-06 5 45353240 45353240 C T HCN1 Missense_Mutation p.E447K 0.31 tolerated(0.08) benign(0.026) TCGA-EE-A3JA-06 5 52361759 52361759 C T ITGA2 Missense_Mutation p.S632F 0.34 deleterious(0) possibly_damaging(0.861) TCGA-EE-A3JA-06 5 5306727 5306727 G A ADAMTS16 Silent p.P1099P 0.80 TCGA-EE-A3JA-06 5 54281367 54281367 C T ESM1 5'UTR 0.27 TCGA-EE-A3JA-06 5 54329643 54329643 C T GZMK Silent p.V228V 0.32 TCGA-EE-A3JA-06 5 55212634 55212634 G A IL31RA Missense_Mutation p.E661K 0.39 tolerated(0.24) benign(0.046) TCGA-EE-A3JA-06 5 55212767 55212767 C T IL31RA Missense_Mutation p.S705L 0.21 tolerated(0.63) benign(0.003) TCGA-EE-A3JA-06 5 64447589 64447589 C T ADAMTS6 3'UTR 0.74 TCGA-EE-A3JA-06 5 65350440 65350440 G A ERBB2IP Silent p.Q1098Q 0.26 TCGA-EE-A3JA-06 5 75969815 75969815 C T IQGAP2 Missense_Mutation p.S1083L 0.58 deleterious(0.05) possibly_damaging(0.573) TCGA-EE-A3JA-06 5 79498805 79498805 G A SERINC5 Missense_Mutation p.S32F 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 5 79616713 79616713 C T SPZ1 Nonsense_Mutation p.Q227* 0.16 TCGA-EE-A3JA-06 5 83549909 83549909 C T EDIL3 Silent p.V63V 0.43 TCGA-EE-A3JA-06 5 90000254 90000254 C T GPR98 Missense_Mutation p.P2779S 0.23 probably_damaging(0.968) TCGA-EE-A3JA-06 5 9052122 9052122 G A SEMA5A Missense_Mutation p.S903L 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3JA-06 5 95735798 95735798 C T PCSK1 Missense_Mutation p.G430E 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 6 106969110 106969110 C T AIM1 Silent p.L935L 0.78 TCGA-EE-A3JA-06 6 10802154 10802154 C T MAK Missense_Mutation p.D268N 0.39 tolerated(0.3) benign(0.074) TCGA-EE-A3JA-06 6 116756873 116756873 C T DSE Silent p.F414F 0.76 TCGA-EE-A3JA-06 6 117248222 117248222 C T RFX6 Silent p.L640L 0.72 TCGA-EE-A3JA-06 6 122744078 122744078 A T HSF2 Missense_Mutation p.N349I 0.75 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JA-06 6 128176241 128176241 C T THEMIS Missense_Mutation p.E62K 0.79 tolerated(0.09) benign(0.234) TCGA-EE-A3JA-06 6 132892410 132892410 G A TAAR6 Nonsense_Mutation p.W317* 0.75 TCGA-EE-A3JA-06 6 132939105 132939105 G A TAAR2 Silent p.F80F 0.68 TCGA-EE-A3JA-06 6 13365623 13365623 G A GFOD1 Silent p.S175S 0.45 TCGA-EE-A3JA-06 6 136683760 136683760 C T MAP7 Missense_Mutation p.A474T 0.40 tolerated(0.11) benign(0.085) TCGA-EE-A3JA-06 6 146351039 146351039 C G GRM1 Missense_Mutation p.S129C 0.73 deleterious(0) probably_damaging(0.95) TCGA-EE-A3JA-06 6 152668338 152668338 G A SYNE1 Silent p.D3978D 0.68 TCGA-EE-A3JA-06 6 152765628 152765628 G A SYNE1 Missense_Mutation p.S1252F 0.79 possibly_damaging(0.836) TCGA-EE-A3JA-06 6 160211583 160211583 G A MRPL18 5'UTR 0.84 TCGA-EE-A3JA-06 6 161139760 161139760 G A PLG Missense_Mutation p.G329E 0.68 tolerated(0.07) benign(0.303) TCGA-EE-A3JA-06 6 165706911 165706911 C T C6orf118 Missense_Mutation p.E371K 0.75 tolerated(0.49) benign(0.008) TCGA-EE-A3JA-06 6 17541254 17541254 C A CAP2 Silent p.R293R 0.39 TCGA-EE-A3JA-06 6 24566965 24566965 G A KIAA0319 Missense_Mutation p.P718S 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 6 25777005 25777005 C A SLC17A4 Intron 0.41 TCGA-EE-A3JA-06 6 26158365 26158365 G A HIST1H2BD 5'Flank 0.36 TCGA-EE-A3JA-06 6 26377372 26377372 C T BTN3A2 3'UTR 0.36 TCGA-EE-A3JA-06 6 26377373 26377373 C T BTN3A2 3'UTR 0.36 TCGA-EE-A3JA-06 6 28483479 28483479 G A GPX6 Silent p.F14F 0.39 TCGA-EE-A3JA-06 6 28542726 28542726 G A SCAND3 Missense_Mutation p.P586S 0.45 tolerated_low_confidence(0.11) benign(0.001) TCGA-EE-A3JA-06 6 28543503 28543503 C T SCAND3 Missense_Mutation p.E327K 0.33 tolerated_low_confidence(0.07) benign(0.07) TCGA-EE-A3JA-06 6 29408570 29408570 C T OR10C1 Missense_Mutation p.R260C 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JA-06 6 32008216 32008216 G A CYP21A2 Missense_Mutation p.E325K 0.30 tolerated(1) benign(0.023) TCGA-EE-A3JA-06 6 32011576 32011576 G A TNXB Missense_Mutation p.S256L 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 6 32017225 32017225 G A TNXB 5'Flank 0.34 TCGA-EE-A3JA-06 6 32020485 32020485 C T TNXB Missense_Mutation p.G3024E 0.35 probably_damaging(0.988) TCGA-EE-A3JA-06 6 32023880 32023880 G A TNXB Silent p.L2739L 0.45 TCGA-EE-A3JA-06 6 33052751 33052751 C T HLA-DPB1 Missense_Mutation p.P130L 0.42 tolerated(0.08) possibly_damaging(0.678) TCGA-EE-A3JA-06 6 33168121 33168121 G A RXRB Missense_Mutation p.P45S 0.42 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JA-06 6 33382582 33382582 C T PHF1 Missense_Mutation p.P342L 0.38 tolerated(0.05) benign(0.001) TCGA-EE-A3JA-06 6 35715184 35715184 C T ARMC12 Silent p.I224I 0.33 TCGA-EE-A3JA-06 6 36070422 36070422 C T MAPK14 Silent p.P279P 0.35 TCGA-EE-A3JA-06 6 36169144 36169144 C T BRPF3 Missense_Mutation p.H349Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 6 36455064 36455064 C T KCTD20 3'UTR 0.33 TCGA-EE-A3JA-06 6 36455065 36455065 C T KCTD20 3'UTR 0.32 TCGA-EE-A3JA-06 6 37612300 37612300 G A MDGA1 Missense_Mutation p.P792S 0.26 tolerated(0.92) possibly_damaging(0.589) TCGA-EE-A3JA-06 6 38738238 38738238 G A DNAH8 Missense_Mutation p.R339K 0.35 benign(0.004) TCGA-EE-A3JA-06 6 38854597 38854597 G A DNAH8 Missense_Mutation p.E2547K 0.38 probably_damaging(0.986) TCGA-EE-A3JA-06 6 39512337 39512337 C T KIF6 Missense_Mutation p.E474K 0.42 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 6 40359663 40359663 G A LRFN2 3'UTR 0.35 TCGA-EE-A3JA-06 6 4099346 4099346 C T C6orf201 Silent p.I66I 0.42 TCGA-EE-A3JA-06 6 42025303 42025303 C T TAF8 Intron 0.46 TCGA-EE-A3JA-06 6 46216633 46216633 C T RCAN2 Missense_Mutation p.E76K 0.25 tolerated(0.26) benign(0.328) TCGA-EE-A3JA-06 6 46977272 46977272 G A GPR110 Silent p.S633S 0.34 TCGA-EE-A3JA-06 6 47649087 47649087 C T GPR111 Silent p.I264I 0.40 TCGA-EE-A3JA-06 6 47754290 47754290 T A OPN5 Missense_Mutation p.M57K 0.51 deleterious(0.02) benign(0.309) TCGA-EE-A3JA-06 6 51611535 51611535 G A PKHD1 Missense_Mutation p.P3328S 0.28 tolerated(0.29) benign(0.007) TCGA-EE-A3JA-06 6 53519485 53519485 G A KLHL31 Missense_Mutation p.R196W 0.40 tolerated(0.19) probably_damaging(0.958) TCGA-EE-A3JA-06 6 53519615 53519615 G A KLHL31 Silent p.I152I 0.45 TCGA-EE-A3JA-06 6 55639005 55639005 C T BMP5 Missense_Mutation p.G290E 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-EE-A3JA-06 6 55739427 55739427 G T BMP5 Silent p.L79L 0.47 TCGA-EE-A3JA-06 6 55924969 55924969 G A COL21A1 Missense_Mutation p.H819Y 0.30 tolerated(0.13) benign(0.002) TCGA-EE-A3JA-06 6 55925689 55925689 G A COL21A1 Silent p.P784P 0.21 TCGA-EE-A3JA-06 6 55925690 55925690 G A COL21A1 Missense_Mutation p.P784L 0.23 deleterious(0.01) possibly_damaging(0.643) TCGA-EE-A3JA-06 6 63990658 63990658 C T LGSN Missense_Mutation p.M266I 0.34 deleterious(0.01) benign(0.026) TCGA-EE-A3JA-06 6 64421686 64421686 C T PHF3 Missense_Mutation p.S1401F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 6 71004057 71004057 G A COL9A1 Missense_Mutation p.S170L 0.37 unknown(0) TCGA-EE-A3JA-06 6 73001643 73001643 C T RIMS1 Silent p.H1248H 0.43 TCGA-EE-A3JA-06 6 7301714 7301714 G A SSR1 Silent p.F124F 0.48 TCGA-EE-A3JA-06 6 73933449 73933449 C T KHDC1L 3'UTR 0.35 TCGA-EE-A3JA-06 6 7579526 7579526 G A DSP Missense_Mutation p.E1035K 0.45 probably_damaging(0.991) TCGA-EE-A3JA-06 6 76623860 76623860 C T MYO6 Missense_Mutation p.P1174S 0.70 tolerated(0.06) probably_damaging(0.989) TCGA-EE-A3JA-06 6 76623861 76623861 C T MYO6 Missense_Mutation p.P1174L 0.71 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 7 100175351 100175351 G A LRCH4 Missense_Mutation p.P351L 0.30 tolerated(0.82) benign(0.006) TCGA-EE-A3JA-06 7 100225217 100225217 C T TFR2 Missense_Mutation p.E584K 0.38 deleterious(0.04) possibly_damaging(0.568) TCGA-EE-A3JA-06 7 100365543 100365543 G A ZAN Silent p.T1650T 0.41 TCGA-EE-A3JA-06 7 100459389 100459389 C T SLC12A9 Missense_Mutation p.R523W 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 7 100675353 100675353 C A MUC17 Missense_Mutation p.T219K 0.30 possibly_damaging(0.624) TCGA-EE-A3JA-06 7 100681122 100681122 C T MUC17 Missense_Mutation p.S2142F 0.35 unknown(0) TCGA-EE-A3JA-06 7 105098192 105098192 A G PUS7 3'UTR 0.42 TCGA-EE-A3JA-06 7 117199609 117199609 C T CFTR Missense_Mutation p.S495F 0.34 deleterious(0) probably_damaging(0.924) TCGA-EE-A3JA-06 7 131196076 131196076 C T PODXL Missense_Mutation p.E73K 0.39 tolerated_low_confidence(0.72) benign(0) TCGA-EE-A3JA-06 7 134890723 134890723 G T WDR91 Missense_Mutation p.P228T 0.31 deleterious(0.03) possibly_damaging(0.886) TCGA-EE-A3JA-06 7 136700756 136700756 G A CHRM2 Missense_Mutation p.E382K 0.33 deleterious(0.05) probably_damaging(0.991) TCGA-EE-A3JA-06 7 136938237 136938237 G A PTN Missense_Mutation p.P88L 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 7 137600659 137600659 G A CREB3L2 Missense_Mutation p.P140L 0.33 tolerated(0.1) probably_damaging(0.998) TCGA-EE-A3JA-06 7 141755423 141755423 C T MGAM Missense_Mutation p.P1127L 0.41 deleterious(0.02) benign(0.338) TCGA-EE-A3JA-06 7 141773941 141773941 G A MGAM Intron 0.38 TCGA-EE-A3JA-06 7 141955399 141955399 C T PRSS58 Silent p.L45L 0.37 TCGA-EE-A3JA-06 7 142001090 142001090 A T TRBV2 Missense_Mutation p.K28I 0.33 TCGA-EE-A3JA-06 7 142045721 142045721 C T TRBV4-2 Silent p.F83F 0.16 TCGA-EE-A3JA-06 7 142104224 142104224 C T TRBV6-9 Missense_Mutation p.D81N 0.41 tolerated(0.25) benign(0.004) TCGA-EE-A3JA-06 7 142139394 142139394 T C TRBV7-6 Silent p.S77S 0.37 TCGA-EE-A3JA-06 7 142223850 142223850 G A TRBV11-1 Missense_Mutation p.S106L 0.11 tolerated(0.06) possibly_damaging(0.777) TCGA-EE-A3JA-06 7 142428703 142428703 G A TRBV28 Silent p.V21V 0.40 TCGA-EE-A3JA-06 7 142457338 142457338 G A PRSS1 Translation_Start_Site p.M1? 0.30 deleterious(0) benign(0.323) TCGA-EE-A3JA-06 7 142457342 142457342 C T PRSS1 Missense_Mutation p.P3S 0.31 tolerated(0.48) benign(0.001) TCGA-EE-A3JA-06 7 142459672 142459672 G A PRSS1 Missense_Mutation p.G83E 0.27 deleterious(0.02) possibly_damaging(0.646) TCGA-EE-A3JA-06 7 142564271 142564271 C G EPHB6 Missense_Mutation p.R499G 0.34 tolerated(0.39) probably_damaging(0.996) TCGA-EE-A3JA-06 7 142609900 142609900 G A TRPV5 Silent p.F512F 0.33 TCGA-EE-A3JA-06 7 142625962 142625962 C T TRPV5 Splice_Site p.X196_splice 0.39 TCGA-EE-A3JA-06 7 142651043 142651043 C T KEL Missense_Mutation p.E309K 0.33 deleterious(0.02) possibly_damaging(0.902) TCGA-EE-A3JA-06 7 143018507 143018507 C T CLCN1 Silent p.F161F 0.32 TCGA-EE-A3JA-06 7 143021572 143021572 G T CLCN1 Silent p.G280G 0.32 TCGA-EE-A3JA-06 7 143454050 143454050 C T CTAGE6 Nonsense_Mutation p.W234* 0.11 TCGA-EE-A3JA-06 7 143657547 143657547 A T OR2F1 Missense_Mutation p.I162F 0.24 tolerated(0.93) benign(0.072) TCGA-EE-A3JA-06 7 143881298 143881298 G A CTAGE4 Nonsense_Mutation p.W234* 0.27 TCGA-EE-A3JA-06 7 146825844 146825844 C T CNTNAP2 Silent p.F333F 0.30 TCGA-EE-A3JA-06 7 147336210 147336210 G A CNTNAP2 Nonsense_Mutation p.W637* 0.29 TCGA-EE-A3JA-06 7 149480200 149480200 G A SSPO RNA 0.38 TCGA-EE-A3JA-06 7 150217858 150217858 G A GIMAP7 Missense_Mutation p.E266K 0.30 tolerated(0.12) benign(0.066) TCGA-EE-A3JA-06 7 150488694 150488694 C T TMEM176B Silent p.E246E 0.39 TCGA-EE-A3JA-06 7 150490274 150490274 C G TMEM176B Missense_Mutation p.D168H 0.39 tolerated(0.13) benign(0.023) TCGA-EE-A3JA-06 7 150556125 150556125 C T AOC1 Silent p.I615I 0.44 TCGA-EE-A3JA-06 7 150737981 150737981 C T ABCB8 Silent p.I485I 0.23 TCGA-EE-A3JA-06 7 150814531 150814531 C T AGAP3 Silent p.P184P 0.36 TCGA-EE-A3JA-06 7 151859299 151859299 G A KMT2C Missense_Mutation p.S3788F 0.45 possibly_damaging(0.786) TCGA-EE-A3JA-06 7 154876092 154876092 C T HTR5A Silent p.F323F 0.30 TCGA-EE-A3JA-06 7 158902549 158902549 G A VIPR2 Silent p.V71V 0.38 TCGA-EE-A3JA-06 7 16502464 16502464 G A SOSTDC1 Silent p.L110L 0.33 TCGA-EE-A3JA-06 7 20198468 20198468 C T MACC1 Missense_Mutation p.D506N 0.39 tolerated(0.09) benign(0.059) TCGA-EE-A3JA-06 7 2279104 2279104 G A FTSJ2 Missense_Mutation p.P83S 0.46 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JA-06 7 2279136 2279136 G A FTSJ2 Missense_Mutation p.P72L 0.54 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 7 23810627 23810627 C T STK31 Nonsense_Mutation p.Q573* 0.27 TCGA-EE-A3JA-06 7 23825146 23825146 C T STK31 Missense_Mutation p.A733V 0.32 deleterious(0.03) possibly_damaging(0.721) TCGA-EE-A3JA-06 7 29546896 29546896 C T CHN2 Silent p.I348I 0.34 TCGA-EE-A3JA-06 7 31887706 31887706 C T PDE1C Missense_Mutation p.D346N 0.38 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JA-06 7 32091189 32091189 C T PDE1C Intron 0.31 TCGA-EE-A3JA-06 7 34014390 34014390 C T BMPER Silent p.S190S 0.38 TCGA-EE-A3JA-06 7 4247761 4247761 G A SDK1 Missense_Mutation p.E1749K 0.28 tolerated(0.27) benign(0.082) TCGA-EE-A3JA-06 7 4260977 4260977 G A SDK1 Silent p.V1936V 0.25 TCGA-EE-A3JA-06 7 45725584 45725584 G A ADCY1 Nonsense_Mutation p.W699* 0.28 TCGA-EE-A3JA-06 7 48092454 48092454 G A C7orf57 Missense_Mutation p.E255K 0.41 tolerated(0.22) benign(0.009) TCGA-EE-A3JA-06 7 48559827 48559827 C T ABCA13 Missense_Mutation p.S4663L 0.41 benign(0.001) TCGA-EE-A3JA-06 7 48619946 48619946 G A ABCA13 Silent p.G4827G 0.33 TCGA-EE-A3JA-06 7 4965103 4965103 C T MMD2 Silent p.A36A 0.31 TCGA-EE-A3JA-06 7 50671731 50671731 G A GRB10 Missense_Mutation p.S503F 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A3JA-06 7 56007736 56007736 A T ZNF713 3'UTR 0.62 TCGA-EE-A3JA-06 7 71036358 71036358 G A WBSCR17 Missense_Mutation p.G351R 0.37 deleterious(0) possibly_damaging(0.735) TCGA-EE-A3JA-06 7 73954224 73954224 C T GTF2IRD1 Missense_Mutation p.S547F 0.33 deleterious(0.01) benign(0.324) TCGA-EE-A3JA-06 7 7420457 7420457 C T COL28A1 Missense_Mutation p.G748S 0.25 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 7 7645637 7645637 C T MIOS Silent p.N822N 0.32 TCGA-EE-A3JA-06 7 77407851 77407851 T C RSBN1L Missense_Mutation p.V636A 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3JA-06 7 82997013 82997013 C T SEMA3E Silent p.R739R 0.38 TCGA-EE-A3JA-06 7 89906553 89906553 G A C7orf63 Missense_Mutation p.G354R 0.17 deleterious(0.03) possibly_damaging(0.798) TCGA-EE-A3JA-06 7 90585122 90585122 C G CDK14 Missense_Mutation p.L295V 0.31 deleterious(0.04) possibly_damaging(0.544) TCGA-EE-A3JA-06 7 92764918 92764918 G A SAMD9L Missense_Mutation p.P123S 0.21 tolerated(0.74) benign(0.008) TCGA-EE-A3JA-06 7 933448 933448 A T GET4 Missense_Mutation p.N273I 0.42 tolerated(0.19) benign(0.016) TCGA-EE-A3JA-06 7 933449 933449 C T GET4 Silent p.N273N 0.40 TCGA-EE-A3JA-06 7 94903268 94903268 G A PPP1R9A Missense_Mutation p.G1061E 0.31 tolerated(0.22) benign(0.012) TCGA-EE-A3JA-06 7 99489760 99489760 G A TRIM4 3'UTR 0.29 TCGA-EE-A3JA-06 8 100515155 100515155 C T VPS13B Silent p.F1378F 0.56 TCGA-EE-A3JA-06 8 105261734 105261734 G A RIMS2 Missense_Mutation p.M1203I 0.42 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EE-A3JA-06 8 106815664 106815664 G A ZFPM2 Silent p.G1118G 0.53 TCGA-EE-A3JA-06 8 110471940 110471940 C T PKHD1L1 Missense_Mutation p.P2374L 0.46 deleterious(0) possibly_damaging(0.535) TCGA-EE-A3JA-06 8 110504139 110504139 G A PKHD1L1 Silent p.G3384G 0.31 TCGA-EE-A3JA-06 8 113988269 113988269 G A CSMD3 Missense_Mutation p.S380F 0.60 tolerated(0.71) benign(0.121) TCGA-EE-A3JA-06 8 121237401 121237401 C T COL14A1 Silent p.F604F 0.15 TCGA-EE-A3JA-06 8 121243857 121243857 G A COL14A1 Silent p.T783T 0.54 TCGA-EE-A3JA-06 8 125082829 125082829 G A FER1L6 Missense_Mutation p.G1319E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 8 125570014 125570014 G A MTSS1 Missense_Mutation p.P380S 0.17 tolerated(0.91) benign(0.004) TCGA-EE-A3JA-06 8 131792714 131792714 G A ADCY8 Silent p.N1226N 0.19 TCGA-EE-A3JA-06 8 133141970 133141970 G A KCNQ3 Silent p.L720L 0.48 TCGA-EE-A3JA-06 8 139856336 139856336 C T COL22A1 Missense_Mutation p.E242K 0.48 unknown(0) TCGA-EE-A3JA-06 8 141583025 141583025 G A AGO2 Silent p.I74I 0.48 TCGA-EE-A3JA-06 8 142222460 142222460 G A SLC45A4 Silent p.L662L 0.23 TCGA-EE-A3JA-06 8 142222461 142222461 G A SLC45A4 Silent p.F661F 0.24 TCGA-EE-A3JA-06 8 143994858 143994858 G A CYP11B2 Missense_Mutation p.P322S 0.23 tolerated(0.11) possibly_damaging(0.764) TCGA-EE-A3JA-06 8 144733037 144733037 C T ZNF623 Missense_Mutation p.S332L 0.43 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3JA-06 8 144874250 144874250 G A SCRIB Missense_Mutation p.S1523F 0.16 probably_damaging(0.999) TCGA-EE-A3JA-06 8 145700198 145700198 C T FOXH1 Missense_Mutation p.G174E 0.50 tolerated(0.09) benign(0.04) TCGA-EE-A3JA-06 8 17867105 17867105 A G PCM1 Missense_Mutation p.D1671G 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 8 18658818 18658818 C T PSD3 Missense_Mutation p.R662K 0.61 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 8 23177452 23177452 C T LOXL2 Silent p.E472E 0.31 TCGA-EE-A3JA-06 8 23709835 23709835 C T STC1 Missense_Mutation p.E61K 0.48 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JA-06 8 24193032 24193032 C T ADAM28 Missense_Mutation p.S482F 0.41 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JA-06 8 24346730 24346730 G A ADAM7 Missense_Mutation p.D384N 0.52 tolerated(0.08) benign(0.269) TCGA-EE-A3JA-06 8 27288404 27288404 C T PTK2B Silent p.F227F 0.51 TCGA-EE-A3JA-06 8 27886902 27886902 C T NUGGC Missense_Mutation p.G679S 0.31 deleterious(0) probably_damaging(0.943) TCGA-EE-A3JA-06 8 2807826 2807826 G A CSMD1 Missense_Mutation p.A3414V 0.26 benign(0.002) TCGA-EE-A3JA-06 8 2813184 2813184 G A CSMD1 Silent p.F3307F 0.29 TCGA-EE-A3JA-06 8 2815229 2815229 G A CSMD1 Missense_Mutation p.T3268I 0.47 benign(0.255) TCGA-EE-A3JA-06 8 2910139 2910139 C T CSMD1 Missense_Mutation p.G2502E 0.32 probably_damaging(0.972) TCGA-EE-A3JA-06 8 30973872 30973872 C T WRN Missense_Mutation p.S759F 0.24 deleterious(0) benign(0.082) TCGA-EE-A3JA-06 8 33230221 33230221 A G FUT10 Silent p.S438S 0.54 TCGA-EE-A3JA-06 8 36768464 36768464 C T KCNU1 Missense_Mutation p.S783F 0.26 tolerated(0.12) benign(0.372) TCGA-EE-A3JA-06 8 37720449 37720449 G A RAB11FIP1 Silent p.I1272I 0.50 TCGA-EE-A3JA-06 8 38261941 38261941 C T LETM2 Missense_Mutation p.P332S 0.27 deleterious(0.02) possibly_damaging(0.602) TCGA-EE-A3JA-06 8 39495113 39495113 G A ADAM18 Missense_Mutation p.E240K 0.26 tolerated(1) benign(0.003) TCGA-EE-A3JA-06 8 41519068 41519068 C T ANK1 Intron 0.24 TCGA-EE-A3JA-06 8 42587418 42587418 G A CHRNB3 Missense_Mutation p.R323K 0.49 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 8 53084653 53084653 C T ST18 Silent p.R256R 0.22 TCGA-EE-A3JA-06 8 54141822 54141822 C T OPRK1 3'UTR 0.49 TCGA-EE-A3JA-06 8 55534016 55534016 C T RP1 Missense_Mutation p.P164S 0.46 tolerated(0.05) probably_damaging(0.953) TCGA-EE-A3JA-06 8 57228854 57228854 G A SDR16C5 Missense_Mutation p.S18L 0.45 tolerated(0.74) benign(0.002) TCGA-EE-A3JA-06 8 57354177 57354177 G A PENK Missense_Mutation p.S153F 0.23 tolerated(0.05) benign(0.036) TCGA-EE-A3JA-06 8 6378862 6378862 C T ANGPT2 Silent p.E212E 0.18 TCGA-EE-A3JA-06 8 67066484 67066484 G A TRIM55 Missense_Mutation p.R480Q 0.29 tolerated_low_confidence(0.93) benign(0) TCGA-EE-A3JA-06 8 67803225 67803225 C T MCMDC2 Missense_Mutation p.A400V 0.31 tolerated(0.25) possibly_damaging(0.693) TCGA-EE-A3JA-06 8 68334707 68334707 C T CPA6 3'UTR 0.53 TCGA-EE-A3JA-06 8 68334708 68334708 C T CPA6 3'UTR 0.52 TCGA-EE-A3JA-06 8 72952008 72952008 C T TRPA1 Missense_Mutation p.E696K 0.45 deleterious(0.02) benign(0.424) TCGA-EE-A3JA-06 8 87165251 87165251 G A ATP6V0D2 3'UTR 0.43 TCGA-EE-A3JA-06 8 87591092 87591092 C T CNGB3 Splice_Site p.X643_splice 0.28 TCGA-EE-A3JA-06 8 87917311 87917311 G A CNBD1 Missense_Mutation p.R54Q 0.47 tolerated(0.29) benign(0.004) TCGA-EE-A3JA-06 8 95164179 95164179 G A CDH17 Silent p.F571F 0.51 TCGA-EE-A3JA-06 9 100076902 100076902 C T CCDC180 Silent p.A241A 0.28 TCGA-EE-A3JA-06 9 104048415 104048415 C T LPPR1 Silent p.F94F 0.44 TCGA-EE-A3JA-06 9 104125007 104125007 G A BAAT Silent p.F320F 0.33 TCGA-EE-A3JA-06 9 104432608 104432608 C T GRIN3A Missense_Mutation p.E696K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JA-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.42 TCGA-EE-A3JA-06 9 113170295 113170295 G A SVEP1 Missense_Mutation p.R2529W 0.23 benign(0.003) TCGA-EE-A3JA-06 9 113170558 113170558 G A SVEP1 Missense_Mutation p.P2441L 0.26 probably_damaging(0.996) TCGA-EE-A3JA-06 9 113194892 113194892 G A SVEP1 Missense_Mutation p.P1695S 0.28 benign(0.021) TCGA-EE-A3JA-06 9 116154511 116154511 G T ALAD Intron 0.35 TCGA-EE-A3JA-06 9 117103927 117103927 G A AKNA Missense_Mutation p.S1318L 0.31 tolerated(0.07) benign(0.001) TCGA-EE-A3JA-06 9 118950331 118950331 G A PAPPA Silent p.G438G 0.40 TCGA-EE-A3JA-06 9 118950332 118950332 G A PAPPA Missense_Mutation p.D439N 0.37 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A3JA-06 9 118974146 118974146 G A PAPPA Missense_Mutation p.G618E 0.28 tolerated(0.98) probably_damaging(0.982) TCGA-EE-A3JA-06 9 120476012 120476012 G A TLR4 Missense_Mutation p.D536N 0.26 tolerated(0.05) benign(0.38) TCGA-EE-A3JA-06 9 121929669 121929669 T C BRINP1 Missense_Mutation p.Y660C 0.37 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JA-06 9 125281758 125281758 C T OR1J4 Silent p.F113F 0.40 TCGA-EE-A3JA-06 9 125330336 125330336 G C OR1L8 Missense_Mutation p.H141D 0.38 deleterious(0.03) benign(0.088) TCGA-EE-A3JA-06 9 125377895 125377895 G A OR1Q1 Silent p.R293R 0.28 TCGA-EE-A3JA-06 9 125760934 125760934 T G RABGAP1 Silent p.P421P 0.34 TCGA-EE-A3JA-06 9 130471740 130471740 G A C9orf117 Silent p.K67K 0.67 TCGA-EE-A3JA-06 9 130495491 130495491 G A TOR2A Intron 0.32 TCGA-EE-A3JA-06 9 131565650 131565650 A G TBC1D13 Missense_Mutation p.N222S 0.25 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 9 131605022 131605022 G A CCBL1 Missense_Mutation p.P38S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JA-06 9 131774560 131774560 C T SH3GLB2 Silent p.Q193Q 0.23 TCGA-EE-A3JA-06 9 133333923 133333923 G A ASS1 Missense_Mutation p.E104K 0.32 tolerated(0.23) benign(0.02) TCGA-EE-A3JA-06 9 133747523 133747523 C T ABL1 Missense_Mutation p.T296I 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JA-06 9 135939861 135939861 C T CEL Missense_Mutation p.S49F 0.34 tolerated(0.62) possibly_damaging(0.848) TCGA-EE-A3JA-06 9 136321797 136321797 T G ADAMTS13 Missense_Mutation p.L1283R 0.44 deleterious(0) benign(0.374) TCGA-EE-A3JA-06 9 136385351 136385351 G A TMEM8C Silent p.I65I 0.29 TCGA-EE-A3JA-06 9 136535833 136535833 G A SARDH Missense_Mutation p.P790S 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 9 136578247 136578247 C T SARDH Splice_Site p.X384_splice 0.40 TCGA-EE-A3JA-06 9 137293577 137293577 C T RXRA Missense_Mutation p.S43F 0.42 deleterious_low_confidence(0.02) benign(0.119) TCGA-EE-A3JA-06 9 137697031 137697031 G A COL5A1 Missense_Mutation p.E1077K 0.34 unknown(0) TCGA-EE-A3JA-06 9 138516118 138516118 G A GLT6D1 Missense_Mutation p.P219L 0.33 deleterious(0.01) possibly_damaging(0.57) TCGA-EE-A3JA-06 9 138676448 138676448 C T KCNT1 Missense_Mutation p.S1004L 0.53 deleterious(0) possibly_damaging(0.85) TCGA-EE-A3JA-06 9 138676636 138676636 C T KCNT1 Silent p.I1019I 0.41 TCGA-EE-A3JA-06 9 139910619 139910619 G A ABCA2 Silent p.L1038L 0.46 TCGA-EE-A3JA-06 9 140218300 140218300 G A EXD3 Silent p.A687A 0.50 TCGA-EE-A3JA-06 9 14720306 14720306 G A CER1 Missense_Mutation p.P196S 0.59 deleterious(0.04) possibly_damaging(0.905) TCGA-EE-A3JA-06 9 15591462 15591462 G A CCDC171 Missense_Mutation p.D151N 0.63 deleterious(0.04) benign(0.039) TCGA-EE-A3JA-06 9 2084115 2084115 C T SMARCA2 Silent p.V815V 0.52 TCGA-EE-A3JA-06 9 27173333 27173333 G A TEK Missense_Mutation p.G292S 0.31 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JA-06 9 32634315 32634315 G A TAF1L Silent p.F421F 0.69 TCGA-EE-A3JA-06 9 34971592 34971592 C T KIAA1045 Silent p.F99F 0.34 TCGA-EE-A3JA-06 9 34976538 34976538 C T KIAA1045 Missense_Mutation p.S217F 0.36 deleterious(0.02) probably_damaging(0.975) TCGA-EE-A3JA-06 9 40772993 40772993 C G ZNF658 Missense_Mutation p.R761P 0.33 deleterious(0.01) possibly_damaging(0.452) TCGA-EE-A3JA-06 9 41963895 41963895 C T RP11-204M4.2 RNA 0.10 TCGA-EE-A3JA-06 9 6252883 6252883 G A IL33 Missense_Mutation p.E121K 0.57 tolerated(0.13) probably_damaging(0.968) TCGA-EE-A3JA-06 9 71628285 71628285 C T PRKACG Missense_Mutation p.D242N 0.46 deleterious(0.05) possibly_damaging(0.696) TCGA-EE-A3JA-06 9 72879317 72879317 C T SMC5 Missense_Mutation p.L95F 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 9 77286749 77286749 G A RORB Missense_Mutation p.E386K 0.32 tolerated(0.25) benign(0.008) TCGA-EE-A3JA-06 9 79321533 79321533 G A PRUNE2 Missense_Mutation p.P1886L 0.32 deleterious(0.05) benign(0.085) TCGA-EE-A3JA-06 9 80144078 80144078 C T GNA14 Silent p.T72T 0.35 TCGA-EE-A3JA-06 9 84606660 84606660 C T SPATA31D1 Silent p.F425F 0.55 TCGA-EE-A3JA-06 9 84607771 84607771 G A SPATA31D1 Missense_Mutation p.D796N 0.26 tolerated(0.31) possibly_damaging(0.804) TCGA-EE-A3JA-06 9 86586837 86586837 G A HNRNPK Missense_Mutation p.R305W 0.28 deleterious(0.05) benign(0.013) TCGA-EE-A3JA-06 9 86586839 86586839 G A HNRNPK Missense_Mutation p.A304V 0.29 tolerated(0.08) benign(0.032) TCGA-EE-A3JA-06 9 87425515 87425515 G A NTRK2 Intron 0.24 TCGA-EE-A3JA-06 9 91605838 91605838 C T C9orf47 5'Flank 0.33 TCGA-EE-A3JA-06 9 96021858 96021858 C T WNK2 Missense_Mutation p.P1010S 0.33 unknown(0) TCGA-EE-A3JA-06 9 99296257 99296257 G A CDC14B Silent p.L300L 0.53 TCGA-EE-A3JA-06 X 106016278 106016278 C T RNF128 Missense_Mutation p.S207L 0.56 tolerated(0.72) possibly_damaging(0.706) TCGA-EE-A3JA-06 X 117959335 117959335 G A ZCCHC12 Missense_Mutation p.R43K 0.76 tolerated(0.13) benign(0.035) TCGA-EE-A3JA-06 X 127185392 127185392 G A ACTRT1 Missense_Mutation p.P265L 0.67 deleterious(0) probably_damaging(0.975) TCGA-EE-A3JA-06 X 128975787 128975787 G A ZDHHC9 Silent p.I45I 0.73 TCGA-EE-A3JA-06 X 135487867 135487867 G A GPR112 Missense_Mutation p.D2891N 0.71 tolerated(0.16) benign(0.135) TCGA-EE-A3JA-06 X 13635872 13635872 G A EGFL6 Missense_Mutation p.E268K 0.76 tolerated(0.05) benign(0.253) TCGA-EE-A3JA-06 X 140993203 140993203 G A MAGEC1 Missense_Mutation p.D5N 0.69 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-EE-A3JA-06 X 140993339 140993339 C T MAGEC1 Missense_Mutation p.P50L 0.72 tolerated_low_confidence(0.25) possibly_damaging(0.713) TCGA-EE-A3JA-06 X 142716477 142716477 C T SLITRK4 Silent p.A816A 0.74 TCGA-EE-A3JA-06 X 151900861 151900861 C T MAGEA12 5'UTR 0.75 TCGA-EE-A3JA-06 X 152100320 152100320 G A ZNF185 Missense_Mutation p.R340K 0.90 tolerated(0.25) benign(0.393) TCGA-EE-A3JA-06 X 153284108 153284108 C T IRAK1 Missense_Mutation p.G224E 0.75 deleterious(0) probably_damaging(1) TCGA-EE-A3JA-06 X 154507335 154507335 G A CLIC2 Missense_Mutation p.R201C 0.78 tolerated(0.09) benign(0.027) TCGA-EE-A3JA-06 X 155239621 155239621 C T IL9R Silent p.A371A 0.24 TCGA-EE-A3JA-06 X 21627571 21627571 G A CNKSR2 Missense_Mutation p.R843Q 0.68 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JA-06 X 24229281 24229281 A T ZFX Nonsense_Mutation p.K736* 0.73 TCGA-EE-A3JA-06 X 26212435 26212435 G A MAGEB6 Missense_Mutation p.D158N 0.75 tolerated(0.5) benign(0.008) TCGA-EE-A3JA-06 X 26212851 26212851 C T MAGEB6 Silent p.F296F 0.70 TCGA-EE-A3JA-06 X 27839538 27839538 C T MAGEB10 Missense_Mutation p.P39S 0.82 tolerated(0.33) benign(0.079) TCGA-EE-A3JA-06 X 2825384 2825384 C T ARSD Silent p.K570K 0.83 TCGA-EE-A3JA-06 X 3007670 3007670 G A ARSF Missense_Mutation p.V322M 0.66 deleterious(0.01) possibly_damaging(0.822) TCGA-EE-A3JA-06 X 32328309 32328309 C T DMD Missense_Mutation p.E2003K 0.92 possibly_damaging(0.486) TCGA-EE-A3JA-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.50 deleterious(0.02) benign(0.166) TCGA-EE-A3JA-06 X 3241641 3241641 G A MXRA5 Silent p.I695I 0.78 TCGA-EE-A3JA-06 X 34149228 34149228 C T FAM47A Missense_Mutation p.E390K 0.70 deleterious(0.03) benign(0.298) TCGA-EE-A3JA-06 X 34149229 34149229 C T FAM47A Silent p.P389P 0.72 TCGA-EE-A3JA-06 X 35969476 35969476 G A CXorf22 Silent p.L295L 0.60 TCGA-EE-A3JA-06 X 43662605 43662605 G A MAOB Missense_Mutation p.P109L 0.68 deleterious(0.01) probably_damaging(0.911) TCGA-EE-A3JA-06 X 48325351 48325351 G A SLC38A5 Silent p.F81F 0.68 TCGA-EE-A3JA-06 X 54492258 54492258 G A FGD1 Silent p.I456I 0.70 TCGA-EE-A3JA-06 X 69283082 69283082 C T OTUD6A Silent p.I236I 0.76 TCGA-EE-A3JA-06 X 71895931 71895931 C T PHKA1 Missense_Mutation p.G203R 0.72 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JA-06 X 72433383 72433383 C T NAP1L2 Missense_Mutation p.D316N 0.77 tolerated(0.08) probably_damaging(0.911) TCGA-EE-A3JA-06 X 74641821 74641821 G A ZDHHC15 Silent p.A247A 0.59 TCGA-EE-A3JA-06 X 83319312 83319312 C T RPS6KA6 Missense_Mutation p.M737I 0.92 tolerated(0.18) benign(0.002) TCGA-EE-A3JA-06 X 9864158 9864158 C T SHROOM2 Missense_Mutation p.S737L 0.69 tolerated(0.17) benign(0.086) TCGA-EE-A3JA-06 Y 4925050 4925050 C T PCDH11Y Silent p.I62I 0.69 TCGA-EE-A3JB-06 10 122334753 122334753 T A PPAPDC1A Missense_Mutation p.L186M 0.21 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JB-06 10 127422297 127422297 C T EDRF1 Missense_Mutation p.A457V 0.50 deleterious(0) possibly_damaging(0.783) TCGA-EE-A3JB-06 10 1405832 1405832 G A ADARB2 Silent p.F156F 0.28 TCGA-EE-A3JB-06 10 14891774 14891774 C T HSPA14 Missense_Mutation p.P144L 0.50 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 10 23326294 23326294 G T ARMC3 Missense_Mutation p.K835N 0.40 tolerated(0.18) possibly_damaging(0.561) TCGA-EE-A3JB-06 10 23326295 23326295 G A ARMC3 Missense_Mutation p.G836R 0.41 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JB-06 10 75406708 75406708 G A SYNPO2L Missense_Mutation p.P901L 0.42 tolerated(0.06) benign(0.006) TCGA-EE-A3JB-06 10 86017686 86017686 G A RGR Missense_Mutation p.G227D 0.47 deleterious(0.04) possibly_damaging(0.733) TCGA-EE-A3JB-06 10 90767594 90767594 G A FAS Missense_Mutation p.G112S 0.46 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 10 91528083 91528083 C T KIF20B Missense_Mutation p.P1636S 0.38 tolerated(0.2) probably_damaging(0.988) TCGA-EE-A3JB-06 10 97081768 97081768 G A SORBS1 Missense_Mutation p.A1217V 0.44 tolerated_low_confidence(0.08) possibly_damaging(0.724) TCGA-EE-A3JB-06 10 97918597 97918597 C T ZNF518A RNA 0.35 TCGA-EE-A3JB-06 11 1009160 1009160 C T AP2A2 Silent p.F827F 0.26 TCGA-EE-A3JB-06 11 101762310 101762310 G T ANGPTL5 Silent p.L289L 0.10 TCGA-EE-A3JB-06 11 101762312 101762312 G A ANGPTL5 Missense_Mutation p.L289F 0.09 tolerated(0.72) benign(0.002) TCGA-EE-A3JB-06 11 105732781 105732781 A C GRIA4 Missense_Mutation p.K173N 0.17 tolerated(0.22) benign(0.01) TCGA-EE-A3JB-06 11 105948468 105948468 G C AASDHPPT Missense_Mutation p.V11L 0.12 tolerated_low_confidence(0.89) benign(0) TCGA-EE-A3JB-06 11 108559732 108559732 C T DDX10 Silent p.S306S 0.28 TCGA-EE-A3JB-06 11 108709293 108709293 G A DDX10 Splice_Site p.X695_splice 0.13 TCGA-EE-A3JB-06 11 111753237 111753237 A G C11orf1 Missense_Mutation p.Y64C 0.27 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JB-06 11 11292836 11292836 C T GALNT18 Missense_Mutation p.G560E 0.29 deleterious(0.04) possibly_damaging(0.482) TCGA-EE-A3JB-06 11 113661099 113661099 C T ATF4P4 RNA 0.31 TCGA-EE-A3JB-06 11 116633573 116633573 G A BUD13 Silent p.V244V 0.17 TCGA-EE-A3JB-06 11 117063026 117063026 C T SIDT2 Silent p.I643I 0.38 TCGA-EE-A3JB-06 11 117691256 117691256 C T FXYD2 Intron 0.73 TCGA-EE-A3JB-06 11 118373240 118373240 G A KMT2A Silent p.R2211R 0.29 TCGA-EE-A3JB-06 11 119031753 119031753 C T ABCG4 Silent p.F626F 0.25 TCGA-EE-A3JB-06 11 11944273 11944273 A T USP47 Missense_Mutation p.K339N 0.51 tolerated(0.33) possibly_damaging(0.723) TCGA-EE-A3JB-06 11 123624669 123624669 G A OR6X1 Silent p.A186A 0.11 TCGA-EE-A3JB-06 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JB-06 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.27 tolerated(0.19) benign(0.224) TCGA-EE-A3JB-06 11 124440836 124440836 C T OR8A1 Missense_Mutation p.S291F 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 11 130011452 130011452 C T APLP2 Silent p.G673G 0.24 TCGA-EE-A3JB-06 11 130011453 130011453 C T APLP2 Missense_Mutation p.L674F 0.24 tolerated(0.18) probably_damaging(0.999) TCGA-EE-A3JB-06 11 130318952 130318952 C T ADAMTS15 Silent p.P28P 0.33 TCGA-EE-A3JB-06 11 14665692 14665692 C T PDE3B Missense_Mutation p.P24L 0.22 tolerated(0.15) benign(0.001) TCGA-EE-A3JB-06 11 18159468 18159468 C T MRGPRX3 Missense_Mutation p.S240F 0.31 tolerated(0.76) benign(0.002) TCGA-EE-A3JB-06 11 22248959 22248959 C T ANO5 Missense_Mutation p.P159S 0.27 tolerated(0.32) benign(0.063) TCGA-EE-A3JB-06 11 2432706 2432706 G A TRPM5 Silent p.A886A 0.27 TCGA-EE-A3JB-06 11 3062236 3062236 G A CARS Intron 0.29 TCGA-EE-A3JB-06 11 4510786 4510786 C T OR52K1 Missense_Mutation p.S219F 0.25 deleterious(0) possibly_damaging(0.883) TCGA-EE-A3JB-06 11 4566771 4566771 C T OR52M1 Silent p.F117F 0.34 TCGA-EE-A3JB-06 11 46722571 46722571 C T ZNF408 5'UTR 0.32 TCGA-EE-A3JB-06 11 5013325 5013325 G A MMP26 Missense_Mutation p.D243N 0.35 deleterious(0) probably_damaging(0.909) TCGA-EE-A3JB-06 11 5153287 5153287 G A OR52A5 Nonsense_Mutation p.R196* 0.25 TCGA-EE-A3JB-06 11 5153288 5153288 G T OR52A5 Silent p.I195I 0.26 TCGA-EE-A3JB-06 11 55136325 55136325 G A OR4A15 Missense_Mutation p.M322I 0.30 tolerated_low_confidence(0.15) benign(0.015) TCGA-EE-A3JB-06 11 55606511 55606511 C T OR5D16 Missense_Mutation p.S95L 0.30 deleterious(0.01) possibly_damaging(0.852) TCGA-EE-A3JB-06 11 55890100 55890100 G A OR8H3 Silent p.A84A 0.28 TCGA-EE-A3JB-06 11 56757003 56757003 T A OR5AK2 Silent p.S205S 0.32 TCGA-EE-A3JB-06 11 58189835 58189835 C T OR5B2 Silent p.K300K 0.33 TCGA-EE-A3JB-06 11 59211124 59211124 C T OR5A1 Silent p.I161I 0.34 TCGA-EE-A3JB-06 11 59599224 59599224 G A GIF Silent p.I373I 0.29 TCGA-EE-A3JB-06 11 60701034 60701034 C T TMEM132A Silent p.A460A 0.14 TCGA-EE-A3JB-06 11 60704598 60704598 C T SLC15A3 3'UTR 0.18 TCGA-EE-A3JB-06 11 61121388 61121388 G A CYB561A3 Silent p.H104H 0.27 TCGA-EE-A3JB-06 11 615007 615007 C T IRF7 Missense_Mutation p.A75T 0.21 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JB-06 11 63656421 63656421 C T MARK2 Intron 0.35 TCGA-EE-A3JB-06 11 64056676 64056676 C T GPR137 Missense_Mutation p.P423S 0.29 tolerated_low_confidence(0.44) benign(0.02) TCGA-EE-A3JB-06 11 64056677 64056677 C T GPR137 Missense_Mutation p.P423L 0.30 tolerated_low_confidence(0.77) benign(0) TCGA-EE-A3JB-06 11 64940037 64940037 G A SPDYC Missense_Mutation p.M159I 0.32 tolerated(0.24) possibly_damaging(0.615) TCGA-EE-A3JB-06 11 65784329 65784329 G A CATSPER1 3'UTR 0.32 TCGA-EE-A3JB-06 11 65829377 65829377 C T SF3B2 Missense_Mutation p.P629S 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 11 66358090 66358090 G A CCDC87 Silent p.I799I 0.26 TCGA-EE-A3JB-06 11 71146478 71146478 C T DHCR7 Silent p.R457R 0.35 TCGA-EE-A3JB-06 11 73834169 73834169 G A C2CD3 Missense_Mutation p.S410F 0.30 deleterious(0) probably_damaging(0.97) TCGA-EE-A3JB-06 11 74329801 74329801 C T POLD3 Silent p.T204T 0.49 TCGA-EE-A3JB-06 11 74800093 74800093 G A OR2AT4 Silent p.S222S 0.32 TCGA-EE-A3JB-06 11 74800155 74800155 G A OR2AT4 Missense_Mutation p.L202F 0.29 tolerated(0.91) benign(0.009) TCGA-EE-A3JB-06 11 74800156 74800156 G C OR2AT4 Silent p.T201T 0.28 TCGA-EE-A3JB-06 11 75430907 75430907 C T MOGAT2 Intron 0.35 TCGA-EE-A3JB-06 11 76062392 76062392 G A PRKRIR Missense_Mutation p.A601V 0.30 tolerated(0.15) benign(0.285) TCGA-EE-A3JB-06 11 77333673 77333673 C T CLNS1A Missense_Mutation p.G173E 0.37 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JB-06 11 77594934 77594934 C T INTS4 Missense_Mutation p.G886D 0.11 tolerated(0.24) possibly_damaging(0.719) TCGA-EE-A3JB-06 11 77820538 77820538 G A ALG8 Missense_Mutation p.P330S 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 11 78423683 78423683 G A TENM4 Missense_Mutation p.R1300W 0.34 deleterious(0.01) benign(0.032) TCGA-EE-A3JB-06 11 89956105 89956105 G - CHORDC1 Frame_Shift_Del p.Y6* 0.16 TCGA-EE-A3JB-06 11 9172244 9172244 G A DENND5A Silent p.S863S 0.18 TCGA-EE-A3JB-06 11 9172245 9172245 G A DENND5A Missense_Mutation p.S863F 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3JB-06 11 92532707 92532707 C T FAT3 Silent p.I2176I 0.47 TCGA-EE-A3JB-06 11 92565007 92565007 C T FAT3 Missense_Mutation p.P3234L 0.21 probably_damaging(0.999) TCGA-EE-A3JB-06 11 92577105 92577105 G A FAT3 Silent p.K3524K 0.32 TCGA-EE-A3JB-06 11 93141478 93141478 G A CCDC67 Missense_Mutation p.D470N 0.30 tolerated(0.16) benign(0.16) TCGA-EE-A3JB-06 11 93148277 93148277 A T CCDC67 Silent p.P545P 0.15 TCGA-EE-A3JB-06 11 93800800 93800800 G A HEPHL1 Missense_Mutation p.R316K 0.13 tolerated(0.3) benign(0.268) TCGA-EE-A3JB-06 11 94320221 94320221 C T PIWIL4 Missense_Mutation p.S241F 0.29 tolerated(0.06) benign(0.243) TCGA-EE-A3JB-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.35 tolerated(0.09) possibly_damaging(0.653) TCGA-EE-A3JB-06 12 100489541 100489541 G A UHRF1BP1L Silent p.S248S 0.31 TCGA-EE-A3JB-06 12 102076393 102076393 G A MYBPC1 Missense_Mutation p.G1142R 0.15 tolerated_low_confidence(0.07) probably_damaging(0.955) TCGA-EE-A3JB-06 12 104492131 104492131 C T HCFC2 Missense_Mutation p.P584L 0.48 tolerated(0.12) benign(0.053) TCGA-EE-A3JB-06 12 105380177 105380177 C T C12orf45 Missense_Mutation p.P16L 0.63 tolerated_low_confidence(0.05) benign(0.035) TCGA-EE-A3JB-06 12 109292466 109292466 T C DAO Missense_Mutation p.V236A 0.22 deleterious(0) probably_damaging(0.953) TCGA-EE-A3JB-06 12 109848541 109848541 G A MYO1H Missense_Mutation p.E444K 0.42 deleterious(0) possibly_damaging(0.542) TCGA-EE-A3JB-06 12 110418775 110418775 G T GIT2 Missense_Mutation p.L234I 0.36 tolerated(0.14) possibly_damaging(0.483) TCGA-EE-A3JB-06 12 111089079 111089079 C G HVCN1 Missense_Mutation p.E196Q 0.12 deleterious(0.04) probably_damaging(1) TCGA-EE-A3JB-06 12 11183624 11183624 A G TAS2R31 Missense_Mutation p.I104T 0.15 deleterious(0) possibly_damaging(0.816) TCGA-EE-A3JB-06 12 112305454 112305454 C T MAPKAPK5 Missense_Mutation p.P89S 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 12 113333614 113333614 G A RPH3A Silent p.L630L 0.35 TCGA-EE-A3JB-06 12 116675502 116675502 G A MED13L Silent p.L27L 0.25 TCGA-EE-A3JB-06 12 119588973 119588973 C T SRRM4 Missense_Mutation p.P410S 0.33 tolerated_low_confidence(0.16) benign(0.057) TCGA-EE-A3JB-06 12 123028725 123028725 C T KNTC1 Missense_Mutation p.S193F 0.38 tolerated(0.43) benign(0.205) TCGA-EE-A3JB-06 12 133219876 133219876 G A POLE Silent p.A1495A 0.21 TCGA-EE-A3JB-06 12 14849277 14849277 C T GUCY2C Missense_Mutation p.E36K 0.43 tolerated(0.85) benign(0.045) TCGA-EE-A3JB-06 12 1943918 1943918 G A LRTM2 3'UTR 0.42 TCGA-EE-A3JB-06 12 1995503 1995503 C T CACNA2D4 Silent p.V293V 0.12 TCGA-EE-A3JB-06 12 24736497 24736497 C T LINC00477 RNA 0.14 TCGA-EE-A3JB-06 12 2613675 2613675 T C CACNA1C Intron 0.30 TCGA-EE-A3JB-06 12 26868297 26868297 G A ITPR2 Missense_Mutation p.L264F 0.36 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 12 3131141 3131141 C T TEAD4 Silent p.F285F 0.16 TCGA-EE-A3JB-06 12 32481453 32481453 C T BICD1 Silent p.I688I 0.22 TCGA-EE-A3JB-06 12 41386931 41386931 T A CNTN1 Missense_Mutation p.I658N 0.39 tolerated(0.45) benign(0.001) TCGA-EE-A3JB-06 12 42854184 42854184 C T PRICKLE1 Silent p.G641G 0.31 TCGA-EE-A3JB-06 12 4479704 4479704 C T FGF23 Silent p.R187R 0.22 TCGA-EE-A3JB-06 12 47471828 47471828 C T AMIGO2 Missense_Mutation p.D320N 0.31 tolerated(0.57) possibly_damaging(0.627) TCGA-EE-A3JB-06 12 47472445 47472445 G A AMIGO2 Missense_Mutation p.S114F 0.16 tolerated(0.24) probably_damaging(0.928) TCGA-EE-A3JB-06 12 48880471 48880471 G A C12orf54 Missense_Mutation p.E33K 0.15 tolerated(0.12) possibly_damaging(0.801) TCGA-EE-A3JB-06 12 50498357 50498357 G A GPD1 Nonsense_Mutation p.W14* 0.45 TCGA-EE-A3JB-06 12 50616039 50616039 G C LIMA1 Nonsense_Mutation p.S132* 0.48 TCGA-EE-A3JB-06 12 51279119 51279119 C T TMPRSS12 Missense_Mutation p.P248L 0.17 deleterious(0.01) benign(0.326) TCGA-EE-A3JB-06 12 52966383 52966383 C T KRT74 Silent p.L180L 0.35 TCGA-EE-A3JB-06 12 57110587 57110587 G A NACA Intron 0.21 TCGA-EE-A3JB-06 12 57422438 57422438 C T MYO1A 3'UTR 0.24 TCGA-EE-A3JB-06 12 57627354 57627354 C T SHMT2 Silent p.T344T 0.21 TCGA-EE-A3JB-06 12 58000787 58000787 C T DTX3 Silent p.S47S 0.40 TCGA-EE-A3JB-06 12 5939646 5939646 G A ANO2 Silent p.I261I 0.17 TCGA-EE-A3JB-06 12 71092066 71092066 G A PTPRR Missense_Mutation p.R420C 0.31 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JB-06 12 7636159 7636159 C T CD163 Silent p.Q964Q 0.34 TCGA-EE-A3JB-06 12 7639560 7639560 G A CD163 Silent p.S691S 0.21 TCGA-EE-A3JB-06 12 9016488 9016488 T C A2ML1 Silent p.L1201L 0.19 TCGA-EE-A3JB-06 12 9016586 9016586 G A A2ML1 Silent p.G1233G 0.17 TCGA-EE-A3JB-06 12 93793208 93793208 C T NUDT4 3'UTR 0.21 TCGA-EE-A3JB-06 12 96387922 96387922 G A HAL Silent p.D119D 0.18 TCGA-EE-A3JB-06 13 103701770 103701770 C A SLC10A2 Missense_Mutation p.G263V 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 13 114502332 114502332 G A TMEM255B Silent p.T121T 0.52 TCGA-EE-A3JB-06 13 23911333 23911333 C A SACS Missense_Mutation p.D2228Y 0.51 benign(0.019) TCGA-EE-A3JB-06 13 28903799 28903799 T A FLT1 Missense_Mutation p.H887L 0.37 deleterious(0) probably_damaging(0.932) TCGA-EE-A3JB-06 13 51918395 51918395 G A SERPINE3 Silent p.R88R 0.58 TCGA-EE-A3JB-06 13 52508791 52508791 C T ATP7B 3'UTR 0.44 TCGA-EE-A3JB-06 13 58209070 58209070 A T PCDH17 Missense_Mutation p.Y797F 0.20 tolerated(0.33) benign(0.077) TCGA-EE-A3JB-06 13 70281853 70281853 G A KLHL1 Silent p.L697L 0.45 TCGA-EE-A3JB-06 13 76427269 76427269 C T LMO7 Missense_Mutation p.S1236F 0.12 deleterious(0) possibly_damaging(0.697) TCGA-EE-A3JB-06 13 78208580 78208580 G A SCEL Silent p.E586E 0.40 TCGA-EE-A3JB-06 13 92380915 92380915 A C GPC5 Silent p.R384R 0.30 TCGA-EE-A3JB-06 13 94482702 94482702 G A GPC6 Silent p.R205R 0.26 TCGA-EE-A3JB-06 13 98865545 98865545 C T FARP1 Missense_Mutation p.P17S 0.59 tolerated(0.24) benign(0.027) TCGA-EE-A3JB-06 14 103363602 103363602 C T TRAF3 Missense_Mutation p.S275F 0.56 tolerated(0.09) benign(0.24) TCGA-EE-A3JB-06 14 106452712 106452725 TGCTCAGCTCCATG - IGHV1-2 Nonsense_Mutation p.Y99* 0.26 TCGA-EE-A3JB-06 14 20666354 20666354 C T OR11G2 Missense_Mutation p.S287L 0.51 tolerated(0.11) benign(0.232) TCGA-EE-A3JB-06 14 22280052 22280052 T A TRAV9-1 Missense_Mutation p.F81I 0.68 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JB-06 14 24524988 24524988 G A LRRC16B Missense_Mutation p.G254R 0.46 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JB-06 14 24701578 24701578 C T NEDD8 5'UTR 0.38 TCGA-EE-A3JB-06 14 24886023 24886023 C T NYNRIN Missense_Mutation p.L1690F 0.50 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-EE-A3JB-06 14 34266730 34266732 GAA AAAT NPAS3 Frame_Shift_Ins p.E457Kfs*9 0.17 TCGA-EE-A3JB-06 14 51398425 51398425 C T PYGL Missense_Mutation p.G165E 0.45 deleterious(0.01) benign(0.166) TCGA-EE-A3JB-06 14 64519574 64519574 C T SYNE2 Silent p.I2981I 0.52 TCGA-EE-A3JB-06 14 74824855 74824855 T C VRTN Missense_Mutation p.S457P 0.54 tolerated(0.15) benign(0.001) TCGA-EE-A3JB-06 14 88892890 88892890 T A SPATA7 Missense_Mutation p.H229Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 15 100332878 100332878 G A AC090825.1 3'Flank 0.14 TCGA-EE-A3JB-06 15 100339881 100339881 G A DNM1P46 RNA 0.26 TCGA-EE-A3JB-06 15 20649560 20649560 C T HERC2P3 RNA 0.31 TCGA-EE-A3JB-06 15 22332734 22332734 G A RP11-69H14.6 RNA 0.08 TCGA-EE-A3JB-06 15 22368697 22368697 G A OR4M2 Missense_Mutation p.G41E 0.14 deleterious(0) benign(0.425) TCGA-EE-A3JB-06 15 25420128 25420128 C T SNORD115-3 RNA 0.36 TCGA-EE-A3JB-06 15 25474168 25474168 C T SNORD115-32 RNA 0.35 TCGA-EE-A3JB-06 15 34040383 34040383 G A RYR3 Silent p.V2686V 0.19 TCGA-EE-A3JB-06 15 41816412 41816412 G A RPAP1 Missense_Mutation p.P706S 0.43 tolerated(0.18) probably_damaging(0.974) TCGA-EE-A3JB-06 15 41962150 41962150 C T MGA Missense_Mutation p.S353F 0.22 deleterious(0) possibly_damaging(0.677) TCGA-EE-A3JB-06 15 42743008 42743008 G A ZNF106 Nonsense_Mutation p.Q465* 0.19 TCGA-EE-A3JB-06 15 43525426 43525426 T - TGM5 Frame_Shift_Del p.K709Rfs*8 0.32 TCGA-EE-A3JB-06 15 43738697 43738697 T G TP53BP1 Silent p.G976G 0.18 TCGA-EE-A3JB-06 15 43738698 43738698 C T TP53BP1 Missense_Mutation p.G976E 0.18 tolerated(1) benign(0.002) TCGA-EE-A3JB-06 15 50171591 50171591 G A ATP8B4 Silent p.A921A 0.12 TCGA-EE-A3JB-06 15 52338609 52338609 T C MAPK6 5'UTR 0.20 TCGA-EE-A3JB-06 15 52720618 52720618 G A MYO5A Missense_Mutation p.S96F 0.17 deleterious(0) possibly_damaging(0.496) TCGA-EE-A3JB-06 15 54590048 54590048 G A UNC13C Missense_Mutation p.R1343Q 0.36 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EE-A3JB-06 15 63046000 63046000 C T TLN2 Missense_Mutation p.P1454L 0.21 deleterious(0) possibly_damaging(0.561) TCGA-EE-A3JB-06 15 64275881 64275881 C T DAPK2 Silent p.K55K 0.16 TCGA-EE-A3JB-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.37 tolerated(0.08) probably_damaging(0.913) TCGA-EE-A3JB-06 15 68457092 68457092 C T PIAS1 Missense_Mutation p.P320S 0.53 deleterious(0.01) benign(0.162) TCGA-EE-A3JB-06 15 68457093 68457093 C T PIAS1 Missense_Mutation p.P320L 0.52 tolerated(0.06) benign(0.162) TCGA-EE-A3JB-06 15 73614901 73614901 G A HCN4 Missense_Mutation p.P1178L 0.31 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-EE-A3JB-06 15 74327596 74327596 G A PML Intron 0.21 TCGA-EE-A3JB-06 15 74631651 74631651 T G CYP11A1 Missense_Mutation p.H388P 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 15 75015174 75015174 G A CYP1A1 Silent p.L89L 0.35 TCGA-EE-A3JB-06 15 75015175 75015175 G A CYP1A1 Silent p.G88G 0.35 TCGA-EE-A3JB-06 15 83333150 83333150 C T AP3B2 Missense_Mutation p.E725K 0.28 tolerated(0.35) benign(0.292) TCGA-EE-A3JB-06 16 10641415 10641415 G A EMP2 Silent p.F20F 0.18 TCGA-EE-A3JB-06 16 11272358 11272358 T A CLEC16A Silent p.I991I 0.18 TCGA-EE-A3JB-06 16 1129540 1129540 C T SSTR5 Silent p.I224I 0.38 TCGA-EE-A3JB-06 16 1741881 1741881 C T HN1L Silent p.P77P 0.26 TCGA-EE-A3JB-06 16 20974972 20974972 G A DNAH3 Missense_Mutation p.P3412S 0.15 tolerated(0.18) benign(0.044) TCGA-EE-A3JB-06 16 20976139 20976139 G A DNAH3 Nonsense_Mutation p.Q3023* 0.32 TCGA-EE-A3JB-06 16 21031159 21031159 C T DNAH3 Missense_Mutation p.E1937K 0.17 tolerated(0.87) benign(0.097) TCGA-EE-A3JB-06 16 23695351 23695351 C T PLK1 Missense_Mutation p.S326L 0.23 tolerated(0.07) benign(0.007) TCGA-EE-A3JB-06 16 27363900 27363900 C T IL4R Missense_Mutation p.R185C 0.41 tolerated(0.05) possibly_damaging(0.456) TCGA-EE-A3JB-06 16 2812215 2812215 C T SRRM2 Silent p.S562S 0.41 TCGA-EE-A3JB-06 16 2812216 2812216 C T SRRM2 Missense_Mutation p.H563Y 0.42 unknown(0) TCGA-EE-A3JB-06 16 28137058 28137058 C T XPO6 Missense_Mutation p.G573E 0.35 deleterious(0.01) possibly_damaging(0.484) TCGA-EE-A3JB-06 16 28137059 28137059 C T XPO6 Missense_Mutation p.G573R 0.35 deleterious(0.01) possibly_damaging(0.647) TCGA-EE-A3JB-06 16 28993226 28993226 A C SPNS1 Missense_Mutation p.S272R 0.18 deleterious(0) probably_damaging(0.942) TCGA-EE-A3JB-06 16 30392692 30392692 G A SEPT1 Silent p.C141C 0.17 TCGA-EE-A3JB-06 16 30941555 30941555 G A FBXL19 Silent p.S337S 0.20 TCGA-EE-A3JB-06 16 31421776 31421776 C T ITGAD Missense_Mutation p.P382S 0.39 tolerated(0.19) benign(0.014) TCGA-EE-A3JB-06 16 3254832 3254832 G A OR1F1 Missense_Mutation p.E196K 0.20 tolerated(0.05) benign(0.05) TCGA-EE-A3JB-06 16 49672234 49672234 C T ZNF423 Missense_Mutation p.E277K 0.34 deleterious(0.03) benign(0.142) TCGA-EE-A3JB-06 16 53190854 53190854 A C CHD9 Missense_Mutation p.S285R 0.17 possibly_damaging(0.498) TCGA-EE-A3JB-06 16 58437018 58437018 T C GINS3 Missense_Mutation p.L107P 0.18 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JB-06 16 61851400 61851400 G T CDH8 Silent p.I420I 0.20 TCGA-EE-A3JB-06 16 67166422 67166422 C T C16orf70 Missense_Mutation p.P117S 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JB-06 16 67233250 67233250 G A ELMO3 Silent p.V60V 0.33 TCGA-EE-A3JB-06 16 67682059 67682059 G A RLTPR Nonsense_Mutation p.W392* 0.23 TCGA-EE-A3JB-06 16 67911493 67911493 C T EDC4 Silent p.I241I 0.14 TCGA-EE-A3JB-06 16 68056397 68056397 G A DDX28 Silent p.L237L 0.15 TCGA-EE-A3JB-06 16 71220684 71220684 C T HYDIN Missense_Mutation p.E39K 0.45 benign(0.001) TCGA-EE-A3JB-06 16 72863752 72863752 G A ZFHX3 Missense_Mutation p.A1152V 0.19 benign(0.036) TCGA-EE-A3JB-06 16 74943437 74943437 G A WDR59 Missense_Mutation p.P535L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 16 75563660 75563660 G A CHST5 Missense_Mutation p.P208L 0.43 deleterious(0) possibly_damaging(0.871) TCGA-EE-A3JB-06 16 76528908 76528908 G A CNTNAP4 Missense_Mutation p.G655R 0.33 tolerated(0.26) benign(0.216) TCGA-EE-A3JB-06 16 77918628 77918628 G A VAT1L Missense_Mutation p.E336K 0.26 tolerated(0.73) benign(0.049) TCGA-EE-A3JB-06 16 80646712 80646712 G A CDYL2 Silent p.I343I 0.43 TCGA-EE-A3JB-06 16 84203512 84203512 G A DNAAF1 Missense_Mutation p.E360K 0.14 tolerated(0.21) benign(0.039) TCGA-EE-A3JB-06 16 84270359 84270359 C T KCNG4 Missense_Mutation p.D245N 0.19 deleterious(0.02) benign(0.387) TCGA-EE-A3JB-06 16 84494308 84494308 G A ATP2C2 Silent p.R794R 0.50 TCGA-EE-A3JB-06 16 89831400 89831400 G A FANCA Silent p.S892S 0.38 TCGA-EE-A3JB-06 16 90020691 90020691 C T DEF8 Missense_Mutation p.R72W 0.37 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EE-A3JB-06 16 920851 920851 C T LMF1 Silent p.S370S 0.12 TCGA-EE-A3JB-06 16 9857538 9857538 C T GRIN2A Missense_Mutation p.R1288H 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 17 10351276 10351276 C T MYH4 Silent p.E1608E 0.51 TCGA-EE-A3JB-06 17 10398316 10398316 G A MYH1 Missense_Mutation p.R1800C 0.53 deleterious(0.01) benign(0.005) TCGA-EE-A3JB-06 17 10401153 10401153 C T MYH1 Silent p.T1421T 0.30 TCGA-EE-A3JB-06 17 21318937 21318937 T C KCNJ12 Missense_Mutation p.W95R 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 17 27074228 27074228 C T TRAF4 Intron 0.26 TCGA-EE-A3JB-06 17 27425431 27425431 C T MYO18A Silent p.E1271E 0.19 TCGA-EE-A3JB-06 17 33456448 33456448 G A FNDC8 Nonsense_Mutation p.W198* 0.23 TCGA-EE-A3JB-06 17 33769194 33769194 C T SLFN13 Missense_Mutation p.G437E 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 17 34344887 34344887 G A CCL23 Silent p.A16A 0.28 TCGA-EE-A3JB-06 17 34431283 34431283 C T CCL4 5'UTR 0.25 TCGA-EE-A3JB-06 17 35538295 35538295 G A ACACA Silent p.I1593I 0.21 TCGA-EE-A3JB-06 17 37565202 37565202 G A MED1 Missense_Mutation p.S1091F 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3JB-06 17 39780588 39780588 G A KRT17 Silent p.S58S 0.21 TCGA-EE-A3JB-06 17 40489793 40489793 G A STAT3 Silent p.D211D 0.25 TCGA-EE-A3JB-06 17 40639346 40639346 C T ATP6V0A1 Silent p.T335T 0.22 TCGA-EE-A3JB-06 17 40914382 40914382 T A RAMP2 Missense_Mutation p.V58E 0.29 tolerated(0.51) benign(0) TCGA-EE-A3JB-06 17 41004728 41004728 G A AOC3 Silent p.A456A 0.27 TCGA-EE-A3JB-06 17 41102589 41102589 G A AARSD1 3'UTR 0.18 TCGA-EE-A3JB-06 17 4578571 4578571 G A PELP1 Silent p.L385L 0.40 TCGA-EE-A3JB-06 17 48156823 48156823 C T ITGA3 Missense_Mutation p.P870S 0.12 tolerated(0.42) benign(0.012) TCGA-EE-A3JB-06 17 48356278 48356278 G A TMEM92 Missense_Mutation p.G96E 0.28 tolerated(0.59) benign(0.01) TCGA-EE-A3JB-06 17 48460400 48460400 T A LRRC59 Silent p.L291L 0.20 TCGA-EE-A3JB-06 17 4858534 4858534 T C ENO3 Silent p.D203D 0.42 TCGA-EE-A3JB-06 17 54893238 54893238 A C C17orf67 5'UTR 0.21 TCGA-EE-A3JB-06 17 57287383 57287383 C T SMG8 5'UTR 0.29 TCGA-EE-A3JB-06 17 57287384 57287384 C T SMG8 5'UTR 0.29 TCGA-EE-A3JB-06 17 58511257 58511257 G A C17orf64 3'Flank 0.28 TCGA-EE-A3JB-06 17 60483847 60483847 C T EFCAB3 Silent p.F217F 0.16 TCGA-EE-A3JB-06 17 60757799 60757799 G A MRC2 Missense_Mutation p.D820N 0.20 tolerated(0.22) benign(0.064) TCGA-EE-A3JB-06 17 62818056 62818056 G A RNU7-115P 3'Flank 0.15 TCGA-EE-A3JB-06 17 63534311 63534311 G A AXIN2 Intron 0.21 TCGA-EE-A3JB-06 17 6371587 6371587 G A PITPNM3 Silent p.P616P 0.39 TCGA-EE-A3JB-06 17 6371588 6371588 G A PITPNM3 Missense_Mutation p.P616L 0.38 deleterious(0) possibly_damaging(0.796) TCGA-EE-A3JB-06 17 66871523 66871523 T C ABCA8 Silent p.Q1463Q 0.25 TCGA-EE-A3JB-06 17 72588678 72588678 A T C17orf77 Missense_Mutation p.S165C 0.33 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-EE-A3JB-06 17 72613536 72613536 G A CD300E Nonsense_Mutation p.Q37* 0.24 TCGA-EE-A3JB-06 17 72739288 72739288 G A RAB37 Silent p.Q94Q 0.21 TCGA-EE-A3JB-06 17 72832611 72832611 G A TMEM104 Missense_Mutation p.G426R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 17 7330628 7330628 C T C17orf74 Missense_Mutation p.P440S 0.22 tolerated(0.12) benign(0) TCGA-EE-A3JB-06 17 73724492 73724492 T C ITGB4 Silent p.T168T 0.17 TCGA-EE-A3JB-06 17 74621391 74621391 C T ST6GALNAC1 3'UTR 0.31 TCGA-EE-A3JB-06 17 76672231 76672231 G A CYTH1 Missense_Mutation p.P380L 0.20 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JB-06 17 77924270 77924270 G A TBC1D16 Silent p.S399S 0.31 TCGA-EE-A3JB-06 17 78327492 78327492 C T RNF213 Intron 0.20 TCGA-EE-A3JB-06 17 79202912 79202912 C T ENTHD2 Nonsense_Mutation p.W465* 0.11 TCGA-EE-A3JB-06 17 79478971 79478971 C T ACTG1 Silent p.E107E 0.31 TCGA-EE-A3JB-06 17 8064071 8064071 G A VAMP2 3'UTR 0.47 TCGA-EE-A3JB-06 17 81050936 81050936 C T METRNL Missense_Mutation p.T194I 0.14 tolerated(0.05) possibly_damaging(0.578) TCGA-EE-A3JB-06 18 10675265 10675265 G A PIEZO2 Missense_Mutation p.P2588L 0.43 deleterious(0) probably_damaging(0.94) TCGA-EE-A3JB-06 18 61308225 61308225 C T SERPINB4 Missense_Mutation p.E118K 0.68 tolerated(0.92) benign(0.069) TCGA-EE-A3JB-06 18 65180609 65180609 G A DSEL Missense_Mutation p.P423S 0.25 tolerated(1) benign(0.331) TCGA-EE-A3JB-06 19 10404880 10404880 G A ICAM5 Missense_Mutation p.D626N 0.35 tolerated(0.48) benign(0.002) TCGA-EE-A3JB-06 19 10671070 10671070 G A KRI1 Silent p.L246L 0.15 TCGA-EE-A3JB-06 19 10941027 10941027 C T DNM2 Missense_Mutation p.P839L 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3JB-06 19 11558519 11558519 G A PRKCSH Silent p.P340P 0.25 TCGA-EE-A3JB-06 19 12543219 12543219 G A ZNF443 Nonsense_Mutation p.Q55* 0.32 TCGA-EE-A3JB-06 19 14675058 14675058 C T TECR Missense_Mutation p.R150C 0.15 deleterious(0.01) benign(0.028) TCGA-EE-A3JB-06 19 15302466 15302466 G T NOTCH3 Missense_Mutation p.Q269K 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3JB-06 19 15338473 15338473 C T EPHX3 Silent p.R286R 0.33 TCGA-EE-A3JB-06 19 15535023 15535023 G A WIZ Silent p.F732F 0.23 TCGA-EE-A3JB-06 19 19746293 19746293 C T GMIP Silent p.R497R 0.17 TCGA-EE-A3JB-06 19 20728763 20728763 G A ZNF737 Silent p.A82A 0.17 TCGA-EE-A3JB-06 19 21990978 21990978 G A ZNF43 Missense_Mutation p.P621S 0.14 deleterious(0.03) possibly_damaging(0.592) TCGA-EE-A3JB-06 19 22575649 22575649 C T ZNF98 Missense_Mutation p.D130N 0.17 tolerated(0.31) benign(0.001) TCGA-EE-A3JB-06 19 2853201 2853201 C T ZNF555 Missense_Mutation p.P380S 0.10 tolerated(0.47) benign(0.328) TCGA-EE-A3JB-06 19 3053807 3053807 C T AES 3'UTR 0.13 TCGA-EE-A3JB-06 19 30935544 30935544 T C ZNF536 Missense_Mutation p.F359L 0.21 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JB-06 19 35448867 35448867 A G ZNF792 Missense_Mutation p.V631A 0.44 tolerated(0.61) benign(0.039) TCGA-EE-A3JB-06 19 35450201 35450201 G A ZNF792 Silent p.N186N 0.20 TCGA-EE-A3JB-06 19 37618918 37618918 G A ZNF420 Missense_Mutation p.R342K 0.32 tolerated(1) benign(0) TCGA-EE-A3JB-06 19 38229491 38229491 C A ZNF573 Missense_Mutation p.G634C 0.20 deleterious(0) probably_damaging(0.956) TCGA-EE-A3JB-06 19 40337014 40337014 G A FBL 5'UTR 0.38 TCGA-EE-A3JB-06 19 40364229 40364229 C T FCGBP Missense_Mutation p.E4805K 0.19 benign(0.252) TCGA-EE-A3JB-06 19 40408395 40408395 C T FCGBP Missense_Mutation p.G1482S 0.09 possibly_damaging(0.842) TCGA-EE-A3JB-06 19 41128920 41128920 C T LTBP4 Missense_Mutation p.R1250W 0.39 tolerated(0.12) probably_damaging(0.929) TCGA-EE-A3JB-06 19 41271127 41271127 C T SNRPA 3'UTR 0.20 TCGA-EE-A3JB-06 19 41388010 41388010 C T CYP2A7 Missense_Mutation p.G36R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 19 42092817 42092817 G A CEACAM21 Intron 0.11 TCGA-EE-A3JB-06 19 42489561 42489561 G A ATP1A3 Silent p.S220S 0.17 TCGA-EE-A3JB-06 19 44635090 44635090 C T ZNF225 Missense_Mutation p.S108L 0.41 deleterious(0.02) benign(0.009) TCGA-EE-A3JB-06 19 44891893 44891893 C T ZNF285 Missense_Mutation p.E172K 0.34 tolerated(0.23) benign(0.064) TCGA-EE-A3JB-06 19 44933579 44933579 C T ZNF229 Silent p.K459K 0.17 TCGA-EE-A3JB-06 19 4512034 4512034 C T PLIN4 Silent p.K632K 0.29 TCGA-EE-A3JB-06 19 45997582 45997582 G A RTN2 Missense_Mutation p.P219L 0.35 deleterious_low_confidence(0.03) benign(0.36) TCGA-EE-A3JB-06 19 46387448 46387448 G A IRF2BP1 Missense_Mutation p.P529S 0.20 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JB-06 19 49842093 49842093 A G CD37 Missense_Mutation p.K195R 0.13 tolerated(0.12) benign(0.006) TCGA-EE-A3JB-06 19 50249809 50249809 C T TSKS Missense_Mutation p.G304R 0.35 deleterious(0.01) possibly_damaging(0.807) TCGA-EE-A3JB-06 19 50249810 50249810 C T TSKS Nonsense_Mutation p.W303* 0.36 TCGA-EE-A3JB-06 19 50434213 50434213 C T ATF5 Missense_Mutation p.P36S 0.48 tolerated_low_confidence(0.44) possibly_damaging(0.838) TCGA-EE-A3JB-06 19 50864341 50864341 G A NAPSA Silent p.S175S 0.19 TCGA-EE-A3JB-06 19 52130494 52130494 C T SIGLEC5 Silent p.S430S 0.15 TCGA-EE-A3JB-06 19 52272895 52272895 C T FPR2 Silent p.D328D 0.18 TCGA-EE-A3JB-06 19 52954826 52954826 C T ZNF578 5'Flank 0.56 TCGA-EE-A3JB-06 19 53571340 53571340 G A ZNF160 Missense_Mutation p.P816L 0.16 tolerated(0.06) possibly_damaging(0.766) TCGA-EE-A3JB-06 19 53571341 53571341 G A ZNF160 Missense_Mutation p.P816S 0.16 tolerated(0.08) possibly_damaging(0.483) TCGA-EE-A3JB-06 19 53793362 53793362 C T BIRC8 Missense_Mutation p.G89E 0.31 tolerated(1) benign(0) TCGA-EE-A3JB-06 19 53857506 53857506 C T ZNF845 3'UTR 0.33 TCGA-EE-A3JB-06 19 54140172 54140172 C T DPRX Missense_Mutation p.S169F 0.23 deleterious(0.02) probably_damaging(0.936) TCGA-EE-A3JB-06 19 54803116 54803116 C T LILRA3 Silent p.V187V 0.71 TCGA-EE-A3JB-06 19 55147922 55147922 C T AC009892.10 Intron 0.11 TCGA-EE-A3JB-06 19 55246770 55246770 C T KIR3DL3 Missense_Mutation p.P334S 0.32 tolerated(0.42) benign(0.004) TCGA-EE-A3JB-06 19 55297937 55297937 C T KIR2DL1 3'Flank 0.17 TCGA-EE-A3JB-06 19 55912797 55912797 G A UBE2S 3'UTR 0.19 TCGA-EE-A3JB-06 19 56423088 56423088 C T NLRP13 Missense_Mutation p.D699N 0.15 tolerated(0.27) benign(0.119) TCGA-EE-A3JB-06 19 56435995 56435995 G A NLRP13 Missense_Mutation p.P140S 0.19 deleterious(0.02) benign(0.084) TCGA-EE-A3JB-06 19 56485170 56485170 G T NLRP8 Missense_Mutation p.C896F 0.44 deleterious(0.04) possibly_damaging(0.595) TCGA-EE-A3JB-06 19 57641025 57641025 C T USP29 Missense_Mutation p.L328F 0.16 deleterious(0.04) benign(0.032) TCGA-EE-A3JB-06 19 5772951 5772951 G C CATSPERD Missense_Mutation p.G639A 0.21 tolerated(0.23) benign(0.022) TCGA-EE-A3JB-06 19 57743497 57743497 C T AURKC Silent p.F67F 0.37 TCGA-EE-A3JB-06 19 58152747 58152747 C T ZNF211 Missense_Mutation p.S363F 0.20 tolerated(0.06) possibly_damaging(0.641) TCGA-EE-A3JB-06 19 6760957 6760957 A C SH2D3A Silent p.V37V 0.22 TCGA-EE-A3JB-06 19 7796197 7796197 C T CLEC4G Missense_Mutation p.E59K 0.45 deleterious(0.02) benign(0.141) TCGA-EE-A3JB-06 19 8056644 8056644 C T ELAVL1 Missense_Mutation p.R19K 0.21 tolerated(1) benign(0.004) TCGA-EE-A3JB-06 19 8807893 8807893 G A ACTL9 Silent p.L387L 0.48 TCGA-EE-A3JB-06 19 9045834 9045834 C T MUC16 Missense_Mutation p.E11933K 0.36 benign(0.203) TCGA-EE-A3JB-06 19 9061310 9061310 C T MUC16 Silent p.E8712E 0.16 TCGA-EE-A3JB-06 19 9579841 9579841 G A ZNF560 Silent p.T184T 0.67 TCGA-EE-A3JB-06 1 100346857 100346857 G A AGL Missense_Mutation p.V671I 0.22 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A3JB-06 1 101705249 101705249 T C S1PR1 Missense_Mutation p.F237L 0.21 tolerated(0.83) benign(0.03) TCGA-EE-A3JB-06 1 1139306 1139306 G A TNFRSF18 Missense_Mutation p.P145S 0.49 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-EE-A3JB-06 1 114372594 114372594 G A PTPN22 Missense_Mutation p.S704F 0.22 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JB-06 1 120056981 120056981 C G HSD3B1 Missense_Mutation p.R279G 0.21 tolerated(0.6) benign(0.003) TCGA-EE-A3JB-06 1 12853499 12853499 G A PRAMEF1 Missense_Mutation p.M41I 0.35 tolerated(0.06) benign(0.01) TCGA-EE-A3JB-06 1 1290660 1290660 C G MXRA8 Missense_Mutation p.E148Q 0.15 tolerated(0.25) benign(0.126) TCGA-EE-A3JB-06 1 13940885 13940885 G A PDPN Missense_Mutation p.R230Q 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3JB-06 1 142713801 142713801 C T RP11-417J8.6 RNA 0.15 TCGA-EE-A3JB-06 1 145416592 145416592 G A HFE2 Missense_Mutation p.D313N 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3JB-06 1 148932812 148932812 C T RP11-14N7.2 RNA 0.04 TCGA-EE-A3JB-06 1 152128049 152128049 G A RPTN Missense_Mutation p.S509F 0.18 tolerated(0.08) possibly_damaging(0.862) TCGA-EE-A3JB-06 1 152128532 152128532 C T RPTN Missense_Mutation p.R348K 0.19 tolerated(0.07) benign(0.222) TCGA-EE-A3JB-06 1 152188067 152188067 G A HRNR Missense_Mutation p.S2013F 0.04 unknown(0) TCGA-EE-A3JB-06 1 153303356 153303356 C T PGLYRP4 Missense_Mutation p.G337R 0.18 deleterious(0.03) probably_damaging(0.938) TCGA-EE-A3JB-06 1 153409576 153409576 C T S100A7L2 Silent p.K99K 0.22 TCGA-EE-A3JB-06 1 155717531 155717531 T G GON4L 3'Flank 0.33 TCGA-EE-A3JB-06 1 156770351 156770351 C T PRCC 3'UTR 0.50 TCGA-EE-A3JB-06 1 158549156 158549156 C T OR10X1 Silent p.L178L 0.19 TCGA-EE-A3JB-06 1 158812179 158812179 T C MNDA Missense_Mutation p.V79A 0.38 tolerated(0.89) benign(0.03) TCGA-EE-A3JB-06 1 159175262 159175262 C T DARC Silent p.S13S 0.08 TCGA-EE-A3JB-06 1 160093081 160093081 G A ATP1A2 Missense_Mutation p.E86K 0.41 tolerated(0.09) possibly_damaging(0.802) TCGA-EE-A3JB-06 1 161987270 161987270 C T OLFML2B Missense_Mutation p.G156R 0.20 deleterious(0) probably_damaging(0.953) TCGA-EE-A3JB-06 1 163317606 163317606 G A NUF2 Silent p.L334L 0.39 TCGA-EE-A3JB-06 1 167097730 167097730 G A DUSP27 Missense_Mutation p.R1121Q 0.22 deleterious(0.04) possibly_damaging(0.55) TCGA-EE-A3JB-06 1 169985727 169985727 T G KIFAP3 Silent p.I353I 0.15 TCGA-EE-A3JB-06 1 17331925 17331925 G A ATP13A2 Missense_Mutation p.R78W 0.42 deleterious(0.02) possibly_damaging(0.893) TCGA-EE-A3JB-06 1 173478778 173478778 C T SLC9C2 Missense_Mutation p.E990K 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 1 177133676 177133676 G A ASTN1 Missense_Mutation p.P46L 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3JB-06 1 177247747 177247747 A G BRINP2 Missense_Mutation p.N354S 0.15 tolerated(0.11) probably_damaging(0.985) TCGA-EE-A3JB-06 1 179887340 179887340 C T TOR1AIP1 Missense_Mutation p.P573L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 1 184765094 184765094 A C FAM129A Missense_Mutation p.S602A 0.34 deleterious(0.01) possibly_damaging(0.672) TCGA-EE-A3JB-06 1 185240483 185240483 G A SWT1 Missense_Mutation p.D824N 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 1 201195016 201195016 G A IGFN1 Silent p.E3517E 0.17 TCGA-EE-A3JB-06 1 201195046 201195046 T A IGFN1 Missense_Mutation p.D3527E 0.23 benign(0.155) TCGA-EE-A3JB-06 1 202701030 202701030 G A KDM5B Missense_Mutation p.P1316L 0.16 tolerated(0.2) benign(0.256) TCGA-EE-A3JB-06 1 20305231 20305231 G A PLA2G2A Silent p.I12I 0.37 TCGA-EE-A3JB-06 1 206856374 206856374 G A MAPKAPK2 5'Flank 0.38 TCGA-EE-A3JB-06 1 207263705 207263705 G T C4BPB Missense_Mutation p.K37N 0.19 tolerated(0.12) benign(0.012) TCGA-EE-A3JB-06 1 213341213 213341213 C T RPS6KC1 Missense_Mutation p.P283L 0.36 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JB-06 1 214787141 214787141 G A CENPF Missense_Mutation p.R15K 0.30 probably_damaging(0.987) TCGA-EE-A3JB-06 1 220792013 220792013 T - MARK1 Frame_Shift_Del p.I276Ffs*13 0.27 TCGA-EE-A3JB-06 1 22158151 22158151 G A HSPG2 Silent p.T3782T 0.31 TCGA-EE-A3JB-06 1 22158152 22158152 G A HSPG2 Missense_Mutation p.T3782I 0.33 probably_damaging(0.998) TCGA-EE-A3JB-06 1 230903339 230903339 G A CAPN9 Missense_Mutation p.E197K 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 1 23233420 23233420 G A EPHB2 Missense_Mutation p.M703I 0.10 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JB-06 1 233802413 233802413 C T KCNK1 Missense_Mutation p.P143L 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 1 235956850 235956850 C T LYST Missense_Mutation p.E1357K 0.16 deleterious(0.01) benign(0.006) TCGA-EE-A3JB-06 1 236647128 236647128 G A EDARADD 3'Flank 0.31 TCGA-EE-A3JB-06 1 237580394 237580394 C T RYR2 Silent p.S273S 0.16 TCGA-EE-A3JB-06 1 237777588 237777588 G A RYR2 Missense_Mutation p.M1720I 0.38 possibly_damaging(0.795) TCGA-EE-A3JB-06 1 237872838 237872838 G T RYR2 Nonsense_Mutation p.E3401* 0.10 TCGA-EE-A3JB-06 1 240071290 240071290 G A CHRM3 Missense_Mutation p.R180Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 1 247587645 247587645 C T NLRP3 Silent p.L300L 0.16 TCGA-EE-A3JB-06 1 247695227 247695227 T A OR2C3 Missense_Mutation p.N196I 0.14 tolerated(0.19) possibly_damaging(0.9) TCGA-EE-A3JB-06 1 247875199 247875199 G A OR6F1 Missense_Mutation p.P287S 0.34 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JB-06 1 247875200 247875200 G A OR6F1 Silent p.N286N 0.34 TCGA-EE-A3JB-06 1 248039441 248039441 G A TRIM58 Missense_Mutation p.G371R 0.31 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 1 248616394 248616394 C T OR2T2 Missense_Mutation p.A99V 0.20 deleterious(0.01) benign(0.224) TCGA-EE-A3JB-06 1 248845050 248845050 C T OR14I1 Missense_Mutation p.V186I 0.44 tolerated(0.19) benign(0.099) TCGA-EE-A3JB-06 1 26881071 26881071 G A RPS6KA1 Intron 0.24 TCGA-EE-A3JB-06 1 29041276 29041276 A T GMEB1 Missense_Mutation p.L571F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.617) TCGA-EE-A3JB-06 1 32092393 32092393 A G HCRTR1 Missense_Mutation p.K364E 0.41 deleterious(0.04) benign(0.127) TCGA-EE-A3JB-06 1 32256881 32256881 G A SPOCD1 Missense_Mutation p.L992F 0.33 tolerated(0.61) possibly_damaging(0.725) TCGA-EE-A3JB-06 1 34011783 34011783 G T CSMD2 Missense_Mutation p.P2841Q 0.34 tolerated(0.18) probably_damaging(0.996) TCGA-EE-A3JB-06 1 34190997 34190997 G C CSMD2 Missense_Mutation p.S843C 0.14 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3JB-06 1 43622042 43622042 G A FAM183A 3'UTR 0.47 TCGA-EE-A3JB-06 1 43812473 43812473 C T MPL Silent p.P392P 0.19 TCGA-EE-A3JB-06 1 46073286 46073286 G A NASP Missense_Mutation p.E235K 0.23 tolerated_low_confidence(0.21) benign(0.01) TCGA-EE-A3JB-06 1 46501231 46501231 T G MAST2 Silent p.L1630L 0.28 TCGA-EE-A3JB-06 1 54518911 54518911 G A TMEM59 5'UTR 0.23 TCGA-EE-A3JB-06 1 54518912 54518912 G A TMEM59 5'UTR 0.23 TCGA-EE-A3JB-06 1 5934598 5934598 G A NPHP4 Missense_Mutation p.P1055L 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 1 6653691 6653691 G A KLHL21 Missense_Mutation p.L510F 0.14 tolerated(0.19) benign(0.243) TCGA-EE-A3JB-06 1 67633822 67633822 C T IL23R Nonsense_Mutation p.Q7* 0.13 TCGA-EE-A3JB-06 1 68512953 68512953 C T DIRAS3 Missense_Mutation p.E10K 0.44 tolerated(0.25) benign(0.021) TCGA-EE-A3JB-06 1 70541981 70541981 G A LRRC7 Silent p.Q1446Q 0.16 TCGA-EE-A3JB-06 1 70541982 70541982 G A LRRC7 Splice_Site p.X1446_splice 0.16 TCGA-EE-A3JB-06 1 7151394 7151394 A C CAMTA1 Missense_Mutation p.K89Q 0.44 deleterious(0.03) probably_damaging(0.968) TCGA-EE-A3JB-06 1 75097441 75097441 G A C1orf173 Missense_Mutation p.R259C 0.37 deleterious(0.01) possibly_damaging(0.695) TCGA-EE-A3JB-06 1 78560771 78560771 G A GIPC2 Missense_Mutation p.E188K 0.23 deleterious(0.01) possibly_damaging(0.497) TCGA-EE-A3JB-06 1 79116061 79116061 A G IFI44 Missense_Mutation p.I61V 0.22 tolerated(0.89) benign(0.044) TCGA-EE-A3JB-06 1 82456275 82456275 A G LPHN2 Missense_Mutation p.S1220G 0.34 tolerated_low_confidence(0.52) benign(0.037) TCGA-EE-A3JB-06 1 84356080 84356080 G A TTLL7 Missense_Mutation p.R765W 0.39 deleterious(0) probably_damaging(0.953) TCGA-EE-A3JB-06 1 89150311 89150311 G A PKN2 Silent p.Q16Q 0.36 TCGA-EE-A3JB-06 1 89889966 89889966 C T GBP1P1 RNA 0.19 TCGA-EE-A3JB-06 1 95538376 95538376 G A ALG14 Missense_Mutation p.R27C 0.36 deleterious(0) benign(0.002) TCGA-EE-A3JB-06 1 99387499 99387499 C T LPPR5 Missense_Mutation p.R246Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 20 13779129 13779129 C T NDUFAF5 Missense_Mutation p.P168S 0.22 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JB-06 20 1447409 1447409 C T NSFL1C Missense_Mutation p.D21N 0.38 tolerated(0.12) benign(0.357) TCGA-EE-A3JB-06 20 1447410 1447410 C T NSFL1C Silent p.E20E 0.38 TCGA-EE-A3JB-06 20 1517897 1517897 G C SIRPD Missense_Mutation p.H161D 0.16 tolerated(0.15) possibly_damaging(0.507) TCGA-EE-A3JB-06 20 16348316 16348316 G A KIF16B Silent p.S1218S 0.43 TCGA-EE-A3JB-06 20 17475274 17475274 G A BFSP1 Silent p.D481D 0.27 TCGA-EE-A3JB-06 20 18448066 18448066 T C POLR3F 5'UTR 0.35 TCGA-EE-A3JB-06 20 25459648 25459648 G A NINL Silent p.P704P 0.29 TCGA-EE-A3JB-06 20 25459649 25459649 G A NINL Missense_Mutation p.P704L 0.29 tolerated(0.48) benign(0.011) TCGA-EE-A3JB-06 20 30381757 30381757 C T TPX2 Missense_Mutation p.S539L 0.37 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JB-06 20 31680452 31680452 C T BPIFB4 Silent p.I444I 0.36 TCGA-EE-A3JB-06 20 33324517 33324517 A G NCOA6 Missense_Mutation p.L1980P 0.25 benign(0.002) TCGA-EE-A3JB-06 20 34292344 34292344 C T RBM39 3'UTR 0.35 TCGA-EE-A3JB-06 20 34778703 34778703 C T EPB41L1 Silent p.S428S 0.32 TCGA-EE-A3JB-06 20 35399430 35399430 G A DSN1 Silent p.L67L 0.26 TCGA-EE-A3JB-06 20 36500337 36500337 G A CTNNBL1 Silent p.E538E 0.37 TCGA-EE-A3JB-06 20 3835238 3835238 G A MAVS 5'UTR 0.29 TCGA-EE-A3JB-06 20 43836232 43836232 A G SEMG1 Silent p.R98R 0.41 TCGA-EE-A3JB-06 20 43851264 43851264 A G SEMG2 Missense_Mutation p.T331A 0.39 tolerated(0.09) probably_damaging(0.987) TCGA-EE-A3JB-06 20 44673700 44673700 G A SLC12A5 Missense_Mutation p.G520E 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 20 45353769 45353769 G A SLC2A10 Missense_Mutation p.A32T 0.28 deleterious(0) probably_damaging(0.958) TCGA-EE-A3JB-06 20 45725795 45725795 C T EYA2 Silent p.S292S 0.32 TCGA-EE-A3JB-06 20 47887960 47887960 G A ZNFX1 Missense_Mutation p.P130L 0.26 deleterious_low_confidence(0) benign(0.051) TCGA-EE-A3JB-06 20 48098963 48098963 C G KCNB1 Missense_Mutation p.E19Q 0.43 tolerated(0.06) possibly_damaging(0.631) TCGA-EE-A3JB-06 20 58348419 58348419 G A PHACTR3 Silent p.P279P 0.19 TCGA-EE-A3JB-06 20 5903562 5903562 C T CHGB Nonsense_Mutation p.R258* 0.30 TCGA-EE-A3JB-06 20 60485496 60485496 G A CDH4 Missense_Mutation p.E403K 0.32 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JB-06 20 61510970 61510970 C T DIDO1 Missense_Mutation p.R2113K 0.46 probably_damaging(0.97) TCGA-EE-A3JB-06 20 9404487 9404487 C T PLCB4 Silent p.L792L 0.35 TCGA-EE-A3JB-06 21 10916422 10916422 G A TPTE Silent p.L408L 0.05 TCGA-EE-A3JB-06 21 31914061 31914061 C T KRTAP19-6 Missense_Mutation p.R31K 0.36 tolerated_low_confidence(1) unknown(0) TCGA-EE-A3JB-06 21 37597944 37597944 C T DOPEY2 Silent p.F484F 0.20 TCGA-EE-A3JB-06 21 37597945 37597945 C T DOPEY2 Silent p.L485L 0.20 TCGA-EE-A3JB-06 21 38507810 38507810 T A TTC3 Missense_Mutation p.I525K 0.12 deleterious(0) possibly_damaging(0.836) TCGA-EE-A3JB-06 21 40834459 40834459 G A SH3BGR Silent p.Q131Q 0.10 TCGA-EE-A3JB-06 21 41142863 41142863 C T IGSF5 Missense_Mutation p.P147S 0.25 tolerated(0.07) possibly_damaging(0.511) TCGA-EE-A3JB-06 21 41496209 41496209 G A DSCAM Silent p.S1203S 0.39 TCGA-EE-A3JB-06 21 45513944 45513944 C T TRAPPC10 Missense_Mutation p.P1000S 0.42 tolerated(0.76) benign(0.007) TCGA-EE-A3JB-06 21 47533950 47533950 C T COL6A2 Missense_Mutation p.P255L 0.13 deleterious(0.03) benign(0.012) TCGA-EE-A3JB-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.06 TCGA-EE-A3JB-06 22 18371810 18371810 G A MICAL3 Silent p.L627L 0.39 TCGA-EE-A3JB-06 22 19121890 19121890 C T DGCR14 Missense_Mutation p.S417N 0.07 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JB-06 22 21800780 21800780 C T HIC2 Silent p.P532P 0.22 TCGA-EE-A3JB-06 22 25158342 25158342 G A PIWIL3 Intron 0.13 TCGA-EE-A3JB-06 22 25297916 25297916 C T SGSM1 Silent p.I964I 0.48 TCGA-EE-A3JB-06 22 26997898 26997898 G A CRYBB1 Missense_Mutation p.L174F 0.47 tolerated(0.17) possibly_damaging(0.644) TCGA-EE-A3JB-06 22 32546361 32546361 G A C22orf42 Missense_Mutation p.S200L 0.26 tolerated_low_confidence(0.16) possibly_damaging(0.504) TCGA-EE-A3JB-06 22 36587353 36587353 T C APOL4 Missense_Mutation p.R275G 0.09 tolerated(0.07) benign(0.055) TCGA-EE-A3JB-06 22 36900403 36900403 T A FOXRED2 Missense_Mutation p.N264I 0.41 deleterious(0) probably_damaging(0.977) TCGA-EE-A3JB-06 22 39530047 39530047 G T CBX7 Missense_Mutation p.A202D 0.10 deleterious(0.02) possibly_damaging(0.447) TCGA-EE-A3JB-06 22 39530693 39530693 G A CBX7 Missense_Mutation p.S104F 0.35 deleterious(0) possibly_damaging(0.641) TCGA-EE-A3JB-06 22 41572389 41572389 G T EP300 Nonsense_Mutation p.E1640* 0.15 TCGA-EE-A3JB-06 22 44594524 44594524 C A PARVG Silent p.L245L 0.14 TCGA-EE-A3JB-06 2 100623280 100623280 C T AFF3 Silent p.Q254Q 0.34 TCGA-EE-A3JB-06 2 101706790 101706790 G A TBC1D8 Missense_Mutation p.S55F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JB-06 2 102632511 102632511 A T IL1R2 Nonsense_Mutation p.K171* 0.12 TCGA-EE-A3JB-06 2 105897176 105897176 C T TGFBRAP1 Missense_Mutation p.G376S 0.19 tolerated(0.27) benign(0.112) TCGA-EE-A3JB-06 2 112785951 112785951 G C MERTK Missense_Mutation p.W837S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 112785952 112785952 G A MERTK Nonsense_Mutation p.W837* 0.39 TCGA-EE-A3JB-06 2 113820095 113820095 G A IL36RN Silent p.R103R 0.21 TCGA-EE-A3JB-06 2 113940619 113940619 C T PSD4 Missense_Mutation p.P196S 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.886) TCGA-EE-A3JB-06 2 113940620 113940620 C T PSD4 Missense_Mutation p.P196L 0.38 tolerated_low_confidence(0.1) benign(0.059) TCGA-EE-A3JB-06 2 120003510 120003510 C T STEAP3 Silent p.F156F 0.10 TCGA-EE-A3JB-06 2 120005455 120005455 C T STEAP3 Silent p.F241F 0.33 TCGA-EE-A3JB-06 2 120204447 120204447 G A SCTR Missense_Mutation p.S343F 0.35 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 120383201 120383201 C T PCDP1 Missense_Mutation p.R485C 0.26 deleterious(0) probably_damaging(0.944) TCGA-EE-A3JB-06 2 122154727 122154727 C T CLASP1 Missense_Mutation p.D1038N 0.29 deleterious(0.03) benign(0.08) TCGA-EE-A3JB-06 2 128615600 128615600 A G POLR2D Splice_Site p.X25_splice 0.10 TCGA-EE-A3JB-06 2 130792771 130792771 A T FAR2P1 5'Flank 0.38 TCGA-EE-A3JB-06 2 137928438 137928438 C T THSD7B Silent p.I551I 0.32 TCGA-EE-A3JB-06 2 138169367 138169367 G A THSD7B Missense_Mutation p.G962S 0.27 deleterious(0) probably_damaging(0.931) TCGA-EE-A3JB-06 2 141356300 141356300 G T LRP1B Missense_Mutation p.P2365Q 0.09 probably_damaging(0.942) TCGA-EE-A3JB-06 2 143787204 143787204 G A KYNU Missense_Mutation p.G304E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 166894575 166894575 G A SCN1A Missense_Mutation p.S886F 0.37 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 167334138 167334138 C T SCN7A Silent p.Q23Q 0.17 TCGA-EE-A3JB-06 2 168099418 168099418 C T XIRP2 Missense_Mutation p.H506Y 0.31 probably_damaging(0.999) TCGA-EE-A3JB-06 2 176958158 176958158 C T HOXD13 Silent p.A180A 0.32 TCGA-EE-A3JB-06 2 179466788 179466788 C T TTN Missense_Mutation p.G18404R 0.30 TCGA-EE-A3JB-06 2 179600532 179600532 C T TTN Missense_Mutation p.E4881K 0.30 TCGA-EE-A3JB-06 2 179701576 179701576 A T CCDC141 Intron 0.34 TCGA-EE-A3JB-06 2 179701930 179701930 T G CCDC141 Missense_Mutation p.Q1339P 0.32 tolerated(0.14) possibly_damaging(0.786) TCGA-EE-A3JB-06 2 180348074 180348074 G A ZNF385B Missense_Mutation p.P199S 0.12 tolerated(1) benign(0.001) TCGA-EE-A3JB-06 2 18112584 18112584 C T KCNS3 Silent p.I103I 0.36 TCGA-EE-A3JB-06 2 185802491 185802491 C T ZNF804A Missense_Mutation p.H790Y 0.44 tolerated(1) benign(0) TCGA-EE-A3JB-06 2 18765976 18765976 G A NT5C1B Missense_Mutation p.S236L 0.23 deleterious_low_confidence(0.01) benign(0.028) TCGA-EE-A3JB-06 2 189861890 189861890 G A COL3A1 Splice_Site p.X588_splice 0.18 TCGA-EE-A3JB-06 2 191898243 191898243 A G STAT4 Missense_Mutation p.F609L 0.32 deleterious(0.04) probably_damaging(0.993) TCGA-EE-A3JB-06 2 201438229 201438229 A G SGOL2 Missense_Mutation p.K1054E 0.20 tolerated(0.17) benign(0.081) TCGA-EE-A3JB-06 2 202494062 202494062 G A TMEM237 Nonsense_Mutation p.Q254* 0.26 TCGA-EE-A3JB-06 2 20454681 20454681 T G PUM2 Missense_Mutation p.K938T 0.11 tolerated(0.11) benign(0.038) TCGA-EE-A3JB-06 2 207171031 207171031 T A ZDBF2 Silent p.V593V 0.31 TCGA-EE-A3JB-06 2 21229365 21229365 C T APOB Missense_Mutation p.E3459K 0.28 probably_damaging(0.975) TCGA-EE-A3JB-06 2 21229366 21229366 C T APOB Missense_Mutation p.M3458I 0.28 benign(0) TCGA-EE-A3JB-06 2 216251549 216251549 G A FN1 Missense_Mutation p.P1492L 0.36 tolerated(0.26) probably_damaging(0.993) TCGA-EE-A3JB-06 2 216251550 216251550 G A FN1 Missense_Mutation p.P1492S 0.37 tolerated(0.32) probably_damaging(0.97) TCGA-EE-A3JB-06 2 220505584 220505584 C T SLC4A3 Missense_Mutation p.S1201F 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JB-06 2 225639827 225639827 G A DOCK10 Silent p.N1936N 0.25 TCGA-EE-A3JB-06 2 227958860 227958860 C T COL4A4 Silent p.Q450Q 0.13 TCGA-EE-A3JB-06 2 233612407 233612407 C T GIGYF2 Missense_Mutation p.R42C 0.34 probably_damaging(0.998) TCGA-EE-A3JB-06 2 233721594 233721594 C T GIGYF2 3'UTR 0.26 TCGA-EE-A3JB-06 2 234846122 234846122 T A TRPM8 Missense_Mutation p.I106N 0.19 deleterious(0) possibly_damaging(0.878) TCGA-EE-A3JB-06 2 28821530 28821530 G A PLB1 Missense_Mutation p.E793K 0.14 tolerated(0.4) benign(0.028) TCGA-EE-A3JB-06 2 29294548 29294548 C T C2orf71 Silent p.K860K 0.33 TCGA-EE-A3JB-06 2 3624207 3624207 T C RPS7 Missense_Mutation p.V93A 0.09 deleterious(0) possibly_damaging(0.794) TCGA-EE-A3JB-06 2 49190891 49190891 C T FSHR Missense_Mutation p.E357K 0.34 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 2 51254660 51254660 C T NRXN1 Missense_Mutation p.R251H 0.26 tolerated(0.13) benign(0.009) TCGA-EE-A3JB-06 2 61169565 61169588 CAGACTAGAAGGGAGAAAAGAAGT - PUS10 Splice_Site p.X518_splice 0.21 TCGA-EE-A3JB-06 2 68607553 68607553 G A PLEK Missense_Mutation p.G46R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 69098507 69098507 C T BMP10 5'UTR 0.16 TCGA-EE-A3JB-06 2 71206309 71206309 C T ANKRD53 Missense_Mutation p.P85S 0.16 tolerated(0.6) benign(0.002) TCGA-EE-A3JB-06 2 71801457 71801457 G A DYSF Missense_Mutation p.E1120K 0.37 tolerated(0.1) possibly_damaging(0.79) TCGA-EE-A3JB-06 2 74128540 74128540 C T ACTG2 Silent p.S34S 0.26 TCGA-EE-A3JB-06 2 79385861 79385861 C T REG3A Silent p.R37R 0.30 TCGA-EE-A3JB-06 2 80529463 80529463 C T LRRTM1 Silent p.P494P 0.27 TCGA-EE-A3JB-06 2 85531453 85531453 G A TCF7L1 Silent p.S279S 0.33 TCGA-EE-A3JB-06 2 89309717 89309717 C T IGKV1-9 Missense_Mutation p.G38E 0.22 deleterious(0.01) possibly_damaging(0.896) TCGA-EE-A3JB-06 2 90212098 90212098 C T IGKV3D-11 Missense_Mutation p.P64S 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 2 91843393 91843393 C T AC027612.6 Splice_Site 0.22 TCGA-EE-A3JB-06 2 97215139 97215139 T C ARID5A Missense_Mutation p.F68L 0.33 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 3 108719488 108719488 C T MORC1 Missense_Mutation p.M701I 0.22 tolerated(0.12) benign(0.003) TCGA-EE-A3JB-06 3 10980040 10980040 G A SLC6A11 Silent p.K617K 0.19 TCGA-EE-A3JB-06 3 111297894 111297894 A C CD96 Missense_Mutation p.E204D 0.27 tolerated(0.1) benign(0.193) TCGA-EE-A3JB-06 3 111780754 111780754 T C TMPRSS7 Silent p.S351S 0.48 TCGA-EE-A3JB-06 3 112993366 112993366 C T BOC Missense_Mutation p.P460L 0.26 tolerated(0.64) benign(0.001) TCGA-EE-A3JB-06 3 113176007 113176007 A G SPICE1 Silent p.L545L 0.15 TCGA-EE-A3JB-06 3 121342188 121342188 G A FBXO40 Missense_Mutation p.E638K 0.14 tolerated(1) benign(0.001) TCGA-EE-A3JB-06 3 121415180 121415180 G A GOLGB1 Missense_Mutation p.P1397L 0.21 benign(0.205) TCGA-EE-A3JB-06 3 123049764 123049764 T C ADCY5 Missense_Mutation p.M540V 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JB-06 3 129207101 129207101 C T IFT122 Missense_Mutation p.S669F 0.18 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 3 14208691 14208691 C T XPC Missense_Mutation p.G200E 0.23 tolerated(1) benign(0) TCGA-EE-A3JB-06 3 150264576 150264576 C T EIF2A 5'UTR 0.82 TCGA-EE-A3JB-06 3 169999740 169999740 C T PRKCI Missense_Mutation p.P351S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3JB-06 3 170108030 170108030 T C SKIL Silent p.N483N 0.53 TCGA-EE-A3JB-06 3 171965445 171965445 C T FNDC3B Silent p.H129H 0.16 TCGA-EE-A3JB-06 3 179298431 179298431 G A ACTL6A Missense_Mutation p.V258I 0.15 tolerated(0.33) benign(0.327) TCGA-EE-A3JB-06 3 183885816 183885816 C T DVL3 Silent p.S487S 0.36 TCGA-EE-A3JB-06 3 185229459 185229459 T G LIPH Missense_Mutation p.H374P 0.21 tolerated(0.06) benign(0.222) TCGA-EE-A3JB-06 3 193007754 193007754 G A ATP13A5 Silent p.S981S 0.16 TCGA-EE-A3JB-06 3 193081163 193081163 A G ATP13A5 Silent p.F82F 0.22 TCGA-EE-A3JB-06 3 195794484 195794484 G A TFRC Silent p.S315S 0.33 TCGA-EE-A3JB-06 3 196812524 196812524 C T DLG1 Missense_Mutation p.E622K 0.38 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JB-06 3 197404363 197404363 C T KIAA0226 Missense_Mutation p.R827Q 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 3 197422750 197422750 G A KIAA0226 Missense_Mutation p.A487V 0.25 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JB-06 3 197687095 197687095 G A LMLN Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-EE-A3JB-06 3 3097837 3097837 C T CNTN4 Missense_Mutation p.S1005L 0.28 tolerated(0.37) unknown(0) TCGA-EE-A3JB-06 3 35763116 35763116 G A ARPP21 Missense_Mutation p.G305R 0.16 deleterious(0) possibly_damaging(0.565) TCGA-EE-A3JB-06 3 38603976 38603976 G T SCN5A Missense_Mutation p.P1298H 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 3 38627465 38627465 G A SCN5A Missense_Mutation p.S835L 0.26 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JB-06 3 38662381 38662381 G A SCN5A Silent p.F188F 0.35 TCGA-EE-A3JB-06 3 38804994 38804994 A T SCN10A Splice_Site p.X231_splice 0.15 TCGA-EE-A3JB-06 3 42299709 42299709 T A CCK Missense_Mutation p.M77L 0.17 tolerated(0.68) benign(0.015) TCGA-EE-A3JB-06 3 42734255 42734255 C T HHATL Silent p.E501E 0.20 TCGA-EE-A3JB-06 3 4403791 4403791 G A SUMF1 3'UTR 0.34 TCGA-EE-A3JB-06 3 44684452 44684452 T C ZNF197 Silent p.I610I 0.30 TCGA-EE-A3JB-06 3 47456639 47456639 C T SCAP Missense_Mutation p.D1030N 0.36 deleterious(0.01) possibly_damaging(0.752) TCGA-EE-A3JB-06 3 48572951 48572951 G A PFKFB4 Silent p.I327I 0.18 TCGA-EE-A3JB-06 3 49395072 49395072 C T GPX1 Missense_Mutation p.G121R 0.19 tolerated(0.2) benign(0.007) TCGA-EE-A3JB-06 3 49692808 49692808 C T BSN Missense_Mutation p.P1940L 0.19 unknown(0) TCGA-EE-A3JB-06 3 51929065 51929065 G A IQCF1 Silent p.I153I 0.28 TCGA-EE-A3JB-06 3 52378654 52378654 C T DNAH1 Missense_Mutation p.P479S 0.19 benign(0.022) TCGA-EE-A3JB-06 3 52378655 52378655 C T DNAH1 Missense_Mutation p.P479L 0.19 benign(0.022) TCGA-EE-A3JB-06 3 52552608 52552608 T A STAB1 Missense_Mutation p.D1622E 0.50 tolerated(0.2) benign(0.175) TCGA-EE-A3JB-06 3 56468982 56468982 G A ERC2 Silent p.S18S 0.36 TCGA-EE-A3JB-06 3 64518921 64518921 C T ADAMTS9 Missense_Mutation p.G1880E 0.30 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JB-06 3 66512876 66512876 C T LRIG1 Silent p.P92P 0.32 TCGA-EE-A3JB-06 3 67054484 67054484 C T KBTBD8 Missense_Mutation p.H365Y 0.27 tolerated(0.06) possibly_damaging(0.897) TCGA-EE-A3JB-06 3 7503289 7503289 G A GRM7 Silent p.V465V 0.22 TCGA-EE-A3JB-06 3 93699144 93699144 C T ARL13B 5'UTR 0.38 TCGA-EE-A3JB-06 3 9757669 9757669 C A CPNE9 Silent p.L278L 0.23 TCGA-EE-A3JB-06 3 9989669 9989669 C T PRRT3 Nonsense_Mutation p.W396* 0.17 TCGA-EE-A3JB-06 4 100463203 100463203 G A C4orf17 Silent p.R339R 0.19 TCGA-EE-A3JB-06 4 101108909 101108909 G A DDIT4L Silent p.I169I 0.26 TCGA-EE-A3JB-06 4 111482704 111482704 A G ENPEP Missense_Mutation p.E955G 0.38 tolerated(0.07) benign(0.005) TCGA-EE-A3JB-06 4 115760582 115760582 C T NDST4 Nonsense_Mutation p.W746* 0.22 TCGA-EE-A3JB-06 4 121957367 121957367 G A NDNF 3'UTR 0.22 TCGA-EE-A3JB-06 4 121958804 121958804 C T NDNF Missense_Mutation p.E108K 0.18 tolerated(0.14) possibly_damaging(0.629) TCGA-EE-A3JB-06 4 122068286 122068286 C T TNIP3 Missense_Mutation p.R295Q 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A3JB-06 4 122085217 122085217 C T TNIP3 Missense_Mutation p.E99K 0.17 tolerated(0.15) probably_damaging(0.994) TCGA-EE-A3JB-06 4 138449716 138449716 C T PCDH18 Missense_Mutation p.D886N 0.19 deleterious(0) possibly_damaging(0.65) TCGA-EE-A3JB-06 4 146700595 146700595 G A ZNF827 Missense_Mutation p.P818S 0.26 tolerated(0.16) probably_damaging(0.999) TCGA-EE-A3JB-06 4 148594831 148594831 G A PRMT10 Missense_Mutation p.S178F 0.18 tolerated(0.73) benign(0.009) TCGA-EE-A3JB-06 4 159174647 159174647 G A TMEM144 Missense_Mutation p.G336R 0.21 deleterious(0) probably_damaging(0.972) TCGA-EE-A3JB-06 4 159636711 159636711 C G PPID Intron 0.11 TCGA-EE-A3JB-06 4 164246531 164246531 G A NPY1R Missense_Mutation p.S360F 0.27 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JB-06 4 166000715 166000715 C A TMEM192 3'UTR 0.27 TCGA-EE-A3JB-06 4 169279309 169279309 G A DDX60L Missense_Mutation p.H1704Y 0.23 deleterious_low_confidence(0) benign(0.403) TCGA-EE-A3JB-06 4 175896704 175896704 C T ADAM29 Missense_Mutation p.L10F 0.16 tolerated(0.44) benign(0.26) TCGA-EE-A3JB-06 4 177056375 177056375 G A WDR17 Silent p.V429V 0.22 TCGA-EE-A3JB-06 4 183657973 183657973 G A TENM3 Missense_Mutation p.E994K 0.29 deleterious(0.01) possibly_damaging(0.636) TCGA-EE-A3JB-06 4 185940832 185940832 C T HELT Missense_Mutation p.L107F 0.26 tolerated_low_confidence(0.73) benign(0.117) TCGA-EE-A3JB-06 4 2074697 2074697 G A POLN Nonsense_Mutation p.Q839* 0.54 TCGA-EE-A3JB-06 4 38051434 38051434 C T TBC1D1 Nonsense_Mutation p.Q609* 0.51 TCGA-EE-A3JB-06 4 39191380 39191380 G A WDR19 Missense_Mutation p.S90N 0.38 tolerated(0.15) benign(0.019) TCGA-EE-A3JB-06 4 56448367 56448367 C T PDCL2 Missense_Mutation p.R15K 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3JB-06 4 56765977 56765977 C T EXOC1 Missense_Mutation p.A755V 0.54 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JB-06 4 57514756 57514756 T A HOPX 3'UTR 0.29 TCGA-EE-A3JB-06 4 62758426 62758426 C T LPHN3 Silent p.T443T 0.06 TCGA-EE-A3JB-06 4 69433558 69433558 C T UGT2B17 Missense_Mutation p.M215I 0.46 tolerated(0.15) benign(0.144) TCGA-EE-A3JB-06 4 69962508 69962508 C T UGT2B7 Silent p.I90I 0.07 TCGA-EE-A3JB-06 4 74354372 74354372 T A AFM Missense_Mutation p.F247I 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 4 7736084 7736084 C T SORCS2 Silent p.I1098I 0.52 TCGA-EE-A3JB-06 4 7736085 7736085 C T SORCS2 Missense_Mutation p.L1099F 0.54 deleterious(0.02) probably_damaging(0.961) TCGA-EE-A3JB-06 4 79351571 79351571 G A FRAS1 Missense_Mutation p.G1657S 0.21 probably_damaging(1) TCGA-EE-A3JB-06 4 79403083 79403083 C T FRAS1 Missense_Mutation p.R2857W 0.24 possibly_damaging(0.832) TCGA-EE-A3JB-06 4 80328643 80328643 C T GK2 Missense_Mutation p.E238K 0.17 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A3JB-06 4 80329207 80329207 C T GK2 Missense_Mutation p.E50K 0.17 tolerated(0.09) probably_damaging(0.96) TCGA-EE-A3JB-06 4 81967015 81967015 C T BMP3 Missense_Mutation p.P147L 0.14 tolerated(0.36) benign(0.065) TCGA-EE-A3JB-06 4 83381317 83381317 C T ENOPH1 3'UTR 0.21 TCGA-EE-A3JB-06 4 8620237 8620237 C T CPZ Missense_Mutation p.R529C 0.55 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JB-06 4 88091750 88091750 G A KLHL8 Missense_Mutation p.A409V 0.17 deleterious(0.04) possibly_damaging(0.805) TCGA-EE-A3JB-06 4 89381275 89381275 T A HERC5 Missense_Mutation p.I140K 0.23 deleterious(0) possibly_damaging(0.771) TCGA-EE-A3JB-06 4 94031972 94031972 A T GRID2 Missense_Mutation p.E201D 0.21 tolerated(0.8) benign(0.023) TCGA-EE-A3JB-06 4 96762413 96762413 C T PDHA2 Missense_Mutation p.S371L 0.19 tolerated(0.42) benign(0) TCGA-EE-A3JB-06 5 110097150 110097150 A G SLC25A46 Missense_Mutation p.M309V 0.53 tolerated(0.24) benign(0.018) TCGA-EE-A3JB-06 5 112343651 112343651 G A DCP2 Missense_Mutation p.G320E 0.25 tolerated(0.17) possibly_damaging(0.448) TCGA-EE-A3JB-06 5 134154640 134154640 C T DDX46 Missense_Mutation p.P974S 0.39 deleterious(0.02) possibly_damaging(0.703) TCGA-EE-A3JB-06 5 13817805 13817805 T G DNAH5 Splice_Site p.X2281_splice 0.47 TCGA-EE-A3JB-06 5 13839481 13839481 T G DNAH5 Missense_Mutation p.T1956P 0.47 possibly_damaging(0.803) TCGA-EE-A3JB-06 5 140201389 140201389 G A PCDHA5 Missense_Mutation p.G10E 0.35 tolerated_low_confidence(0.25) benign(0) TCGA-EE-A3JB-06 5 140431951 140431951 G A PCDHB1 Missense_Mutation p.G299E 0.59 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 5 140516600 140516600 C T PCDHB5 Silent p.F528F 0.55 TCGA-EE-A3JB-06 5 140517311 140517311 C T PCDHB5 Silent p.F765F 0.50 TCGA-EE-A3JB-06 5 141243088 141243088 G A PCDH1 Silent p.S936S 0.32 TCGA-EE-A3JB-06 5 154393918 154393918 C T KIF4B Missense_Mutation p.P167S 0.24 tolerated(0.22) benign(0.035) TCGA-EE-A3JB-06 5 160753437 160753437 C T GABRB2 Missense_Mutation p.D377N 0.50 tolerated(0.41) benign(0.033) TCGA-EE-A3JB-06 5 161277684 161277684 C T GABRA1 Intron 0.50 TCGA-EE-A3JB-06 5 176886201 176886201 T C DBN1 Missense_Mutation p.S344G 0.53 tolerated(0.06) benign(0.084) TCGA-EE-A3JB-06 5 176963397 176963397 G A FAM193B Silent p.L346L 0.50 TCGA-EE-A3JB-06 5 178358763 178358763 G A ZFP2 Missense_Mutation p.R150K 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-EE-A3JB-06 5 24488226 24488226 C T CDH10 Missense_Mutation p.R638Q 0.42 tolerated(0.07) benign(0.209) TCGA-EE-A3JB-06 5 32074126 32074126 G A PDZD2 Missense_Mutation p.D972N 0.51 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 5 32101292 32101292 G A PDZD2 Missense_Mutation p.G2767E 0.54 deleterious(0.03) probably_damaging(0.912) TCGA-EE-A3JB-06 5 37064712 37064712 C T NIPBL Silent p.I2711I 0.23 TCGA-EE-A3JB-06 5 38950648 38950648 G A RICTOR Missense_Mutation p.S1101L 0.28 deleterious(0) benign(0.35) TCGA-EE-A3JB-06 5 5463358 5463358 C T KIAA0947 Missense_Mutation p.P1304L 0.48 tolerated(0.41) benign(0.05) TCGA-EE-A3JB-06 5 56242797 56242797 C T MIER3 Missense_Mutation p.D46N 0.42 deleterious(0.02) benign(0.286) TCGA-EE-A3JB-06 5 79374011 79374011 G A THBS4 Silent p.G742G 0.31 TCGA-EE-A3JB-06 5 80171622 80171622 C T MSH3 Silent p.L1119L 0.45 TCGA-EE-A3JB-06 5 89925337 89925337 G A GPR98 Missense_Mutation p.G607E 0.44 benign(0.008) TCGA-EE-A3JB-06 5 90046491 90046491 G A GPR98 Missense_Mutation p.D3700N 0.38 probably_damaging(0.956) TCGA-EE-A3JB-06 5 94278084 94278084 G A MCTP1 Silent p.A343A 0.47 TCGA-EE-A3JB-06 5 95746538 95746538 C T PCSK1 Silent p.E345E 0.39 TCGA-EE-A3JB-06 6 107531744 107531744 C T PDSS2 Missense_Mutation p.E303K 0.30 tolerated(0.63) benign(0.102) TCGA-EE-A3JB-06 6 110726051 110726051 G A DDO Silent p.P156P 0.40 TCGA-EE-A3JB-06 6 127797421 127797421 C T SOGA3 Missense_Mutation p.E584K 0.26 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 6 130762050 130762050 G A TMEM200A Silent p.R161R 0.34 TCGA-EE-A3JB-06 6 132198296 132198296 C T ENPP1 Missense_Mutation p.P630S 0.32 tolerated(0.63) benign(0.009) TCGA-EE-A3JB-06 6 144780309 144780309 G A UTRN Splice_Site p.X843_splice 0.41 TCGA-EE-A3JB-06 6 155596826 155596826 C T CLDN20 5'UTR 0.19 TCGA-EE-A3JB-06 6 168479808 168479808 C T FRMD1 5'UTR 0.40 TCGA-EE-A3JB-06 6 25770316 25770316 C T SLC17A4 Missense_Mutation p.P107S 0.72 deleterious(0.02) possibly_damaging(0.725) TCGA-EE-A3JB-06 6 26017269 26017269 C A HIST1H1A 3'UTR 0.14 TCGA-EE-A3JB-06 6 29644871 29644871 C T ZFP57 5'UTR 0.62 TCGA-EE-A3JB-06 6 31503135 31503135 G A DDX39B Intron 0.40 TCGA-EE-A3JB-06 6 31734980 31734980 C T VWA7 Missense_Mutation p.D613N 0.46 tolerated(0.71) benign(0.004) TCGA-EE-A3JB-06 6 32046931 32046931 A G RNA5SP206 5'Flank 0.55 TCGA-EE-A3JB-06 6 32047033 32047033 G A RNA5SP206 5'Flank 0.62 TCGA-EE-A3JB-06 6 32172159 32172159 G A NOTCH4 Missense_Mutation p.P958L 0.59 deleterious(0.03) probably_damaging(0.92) TCGA-EE-A3JB-06 6 32172160 32172160 G A NOTCH4 Missense_Mutation p.P958S 0.60 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JB-06 6 33281863 33281863 C T TAPBP 5'UTR 0.64 TCGA-EE-A3JB-06 6 40996174 40996174 G A UNC5CL Missense_Mutation p.P499S 0.50 tolerated_low_confidence(0.15) benign(0.021) TCGA-EE-A3JB-06 6 41029070 41029070 A G APOBEC2 Silent p.E45E 0.58 TCGA-EE-A3JB-06 6 47650362 47650362 G A GPR111 Silent p.Q689Q 0.61 TCGA-EE-A3JB-06 6 4954322 4954322 C T CDYL 3'UTR 0.61 TCGA-EE-A3JB-06 6 52303325 52303325 G A EFHC1 Missense_Mutation p.R170Q 0.55 deleterious(0.03) benign(0.223) TCGA-EE-A3JB-06 6 53989385 53989385 G A MLIP Missense_Mutation p.E112K 0.66 tolerated(1) benign(0.001) TCGA-EE-A3JB-06 6 70064197 70064197 C T BAI3 Missense_Mutation p.P1178S 0.50 deleterious(0.02) benign(0.038) TCGA-EE-A3JB-06 6 84025037 84025037 A T ME1 Silent p.V232V 0.51 TCGA-EE-A3JB-06 6 84108201 84108201 C T ME1 Missense_Mutation p.E83K 0.48 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JB-06 7 100679413 100679413 C T MUC17 Silent p.S1572S 0.17 TCGA-EE-A3JB-06 7 100683411 100683411 A C MUC17 Missense_Mutation p.E2905A 0.29 possibly_damaging(0.713) TCGA-EE-A3JB-06 7 100853383 100853383 G A PLOD3 Silent p.I558I 0.30 TCGA-EE-A3JB-06 7 101187320 101187320 C T COL26A1 Missense_Mutation p.P216S 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3JB-06 7 102097926 102097926 G A ALKBH4 Missense_Mutation p.A275V 0.35 tolerated(0.06) benign(0.064) TCGA-EE-A3JB-06 7 104782675 104782675 G A SRPK2 Silent p.S441S 0.29 TCGA-EE-A3JB-06 7 107314679 107314679 C T SLC26A4 Silent p.L162L 0.29 TCGA-EE-A3JB-06 7 107704222 107704222 G A LAMB4 Silent p.L1015L 0.31 TCGA-EE-A3JB-06 7 112108045 112108046 - A IFRD1 Nonsense_Mutation p.Y306* 0.24 TCGA-EE-A3JB-06 7 116435746 116435746 G A MET Missense_Mutation p.R1297K 0.29 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JB-06 7 117067517 117067517 C T ASZ1 5'UTR 0.34 TCGA-EE-A3JB-06 7 117230431 117230431 G T CFTR Missense_Mutation p.L568F 0.10 deleterious(0) benign(0.253) TCGA-EE-A3JB-06 7 120387941 120387941 C T KCND2 3'UTR 0.40 TCGA-EE-A3JB-06 7 120480083 120480083 C T TSPAN12 Silent p.T49T 0.31 TCGA-EE-A3JB-06 7 126173315 126173315 G A GRM8 Silent p.L707L 0.29 TCGA-EE-A3JB-06 7 129916533 129916533 C T CPA2 Silent p.L217L 0.33 TCGA-EE-A3JB-06 7 137263039 137263039 G A DGKI Nonsense_Mutation p.R559* 0.27 TCGA-EE-A3JB-06 7 140111656 140111656 C T RAB19 Intron 0.30 TCGA-EE-A3JB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EE-A3JB-06 7 141672661 141672661 T A TAS2R38 Missense_Mutation p.I277L 0.31 tolerated(0.28) benign(0.022) TCGA-EE-A3JB-06 7 141766417 141766417 C T MGAM Intron 0.28 TCGA-EE-A3JB-06 7 142001145 142001145 A T TRBV2 Silent p.I46I 0.42 TCGA-EE-A3JB-06 7 142143913 142143913 T G TRBV6-7 Missense_Mutation p.K28T 0.26 deleterious(0.03) benign(0.031) TCGA-EE-A3JB-06 7 142609655 142609655 C T TRPV5 Missense_Mutation p.R594K 0.31 tolerated(0.14) probably_damaging(0.997) TCGA-EE-A3JB-06 7 143029570 143029570 G A CLCN1 Missense_Mutation p.G409R 0.24 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 7 143092521 143092521 T G EPHA1 Missense_Mutation p.L658F 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 7 143632379 143632379 C T OR2F2 Silent p.S18S 0.26 TCGA-EE-A3JB-06 7 143792332 143792332 C T OR2A12 Silent p.I44I 0.28 TCGA-EE-A3JB-06 7 1487371 1487371 G A MICALL2 Missense_Mutation p.S122L 0.36 tolerated(0.18) benign(0.005) TCGA-EE-A3JB-06 7 1487373 1487373 G A MICALL2 Silent p.A121A 0.38 TCGA-EE-A3JB-06 7 149474717 149474717 C T ZNF467 5'Flank 0.28 TCGA-EE-A3JB-06 7 149518985 149518985 C T SSPO RNA 0.19 TCGA-EE-A3JB-06 7 150501949 150501949 G A TMEM176A Missense_Mutation p.G234E 0.29 tolerated(1) benign(0.004) TCGA-EE-A3JB-06 7 21789345 21789345 C T DNAH11 Missense_Mutation p.T2915I 0.31 benign(0.328) TCGA-EE-A3JB-06 7 21908530 21908530 C T DNAH11 Missense_Mutation p.S3970F 0.32 probably_damaging(1) TCGA-EE-A3JB-06 7 2752299 2752299 G A AMZ1 Silent p.V428V 0.14 TCGA-EE-A3JB-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.35 TCGA-EE-A3JB-06 7 38247239 38247239 A C STARD3NL Missense_Mutation p.K45T 0.16 tolerated(0.11) benign(0.046) TCGA-EE-A3JB-06 7 39729990 39729990 G A RALA Missense_Mutation p.D42N 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-EE-A3JB-06 7 47852815 47852815 G C PKD1L1 Missense_Mutation p.P2417R 0.32 tolerated(0.16) benign(0.019) TCGA-EE-A3JB-06 7 48312947 48312947 C T ABCA13 Silent p.F1228F 0.25 TCGA-EE-A3JB-06 7 50595843 50595843 G A DDC Missense_Mutation p.P236S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 7 55910796 55910796 C T SEPT14 Missense_Mutation p.D133N 0.25 tolerated(0.09) probably_damaging(1) TCGA-EE-A3JB-06 7 6026896 6026896 G A PMS2 Silent p.S500S 0.37 TCGA-EE-A3JB-06 7 62809664 62809664 C T AC006455.1 5'UTR 0.38 TCGA-EE-A3JB-06 7 72400636 72400636 G A POM121 Missense_Mutation p.R156Q 0.32 tolerated(0.06) probably_damaging(0.916) TCGA-EE-A3JB-06 7 75517507 75517507 C T RHBDD2 Missense_Mutation p.P312L 0.32 deleterious(0.04) benign(0.099) TCGA-EE-A3JB-06 7 8125961 8125961 C T GLCCI1 Silent p.N479N 0.15 TCGA-EE-A3JB-06 7 82579779 82579779 G A PCLO Silent p.T3375T 0.14 TCGA-EE-A3JB-06 7 86479783 86479783 C T GRM3 Missense_Mutation p.P830L 0.25 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JB-06 7 93067372 93067372 C T CALCR Silent p.V344V 0.24 TCGA-EE-A3JB-06 7 95499310 95499310 G A DYNC1I1 Missense_Mutation p.E181K 0.27 tolerated(0.36) benign(0.003) TCGA-EE-A3JB-06 7 95761117 95761117 G A SLC25A13 Missense_Mutation p.S511F 0.40 tolerated(0.7) benign(0.006) TCGA-EE-A3JB-06 7 99569492 99569492 C T AZGP1 Missense_Mutation p.G72R 0.21 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JB-06 8 105405171 105405171 G A DPYS Silent p.F428F 0.17 TCGA-EE-A3JB-06 8 106814745 106814745 C T ZFPM2 Missense_Mutation p.S812F 0.18 deleterious(0.02) benign(0.245) TCGA-EE-A3JB-06 8 110100022 110100022 G A TRHR Missense_Mutation p.G94D 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 8 110441663 110441663 T A PKHD1L1 Missense_Mutation p.L1032Q 0.44 deleterious(0) probably_damaging(0.949) TCGA-EE-A3JB-06 8 110453608 110453608 G A PKHD1L1 Missense_Mutation p.V1402I 0.25 tolerated(0.19) benign(0.17) TCGA-EE-A3JB-06 8 110502237 110502237 G A PKHD1L1 Missense_Mutation p.D3313N 0.19 deleterious(0) benign(0.282) TCGA-EE-A3JB-06 8 113518937 113518937 G A CSMD3 Silent p.I1626I 0.19 TCGA-EE-A3JB-06 8 11418822 11418822 G A BLK Silent p.G347G 0.36 TCGA-EE-A3JB-06 8 120650760 120650760 G A ENPP2 Missense_Mutation p.S14F 0.18 tolerated(0.06) possibly_damaging(0.759) TCGA-EE-A3JB-06 8 125109543 125109543 C T FER1L6 Missense_Mutation p.P1576L 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 8 131916201 131916201 G A ADCY8 Silent p.F576F 0.34 TCGA-EE-A3JB-06 8 131922068 131922068 C T ADCY8 Missense_Mutation p.G509E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 8 139791802 139791802 C T COL22A1 Missense_Mutation p.E552K 0.18 unknown(0) TCGA-EE-A3JB-06 8 141445244 141445244 G A TRAPPC9 Missense_Mutation p.L374F 0.18 tolerated(0.1) possibly_damaging(0.626) TCGA-EE-A3JB-06 8 144874735 144874735 G A SCRIB Silent p.L1416L 0.36 TCGA-EE-A3JB-06 8 145755806 145755806 C A ARHGAP39 Nonstop_Mutation p.*1115Yext*168 0.24 TCGA-EE-A3JB-06 8 146156267 146156267 T C ZNF16 Missense_Mutation p.K636E 0.20 deleterious(0) probably_damaging(0.943) TCGA-EE-A3JB-06 8 18080296 18080296 A G NAT1 Missense_Mutation p.K309R 0.27 tolerated(0.17) benign(0.077) TCGA-EE-A3JB-06 8 23174609 23174609 C T LOXL2 Missense_Mutation p.G497R 0.33 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JB-06 8 24201052 24201052 G A ADAM28 Missense_Mutation p.E649K 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JB-06 8 24211322 24211322 G A ADAM28 Missense_Mutation p.D762N 0.35 tolerated_low_confidence(0.11) benign(0.028) TCGA-EE-A3JB-06 8 2855630 2855630 C T CSMD1 Silent p.V2760V 0.35 TCGA-EE-A3JB-06 8 38845473 38845473 C T HTRA4 Silent p.H429H 0.16 TCGA-EE-A3JB-06 8 42587523 42587523 C T CHRNB3 Missense_Mutation p.S358F 0.15 tolerated(0.46) benign(0) TCGA-EE-A3JB-06 8 49987823 49987823 C T C8orf22 3'UTR 0.20 TCGA-EE-A3JB-06 8 53853390 53853390 C T NPBWR1 Missense_Mutation p.A308V 0.10 deleterious(0) probably_damaging(0.917) TCGA-EE-A3JB-06 8 55539455 55539455 C T RP1 Missense_Mutation p.H1005Y 0.32 tolerated(1) benign(0) TCGA-EE-A3JB-06 8 56864630 56864630 G A LYN Missense_Mutation p.R198Q 0.28 deleterious(0.01) benign(0.329) TCGA-EE-A3JB-06 8 68113852 68113852 G A ARFGEF1 Intron 0.12 TCGA-EE-A3JB-06 8 79598800 79598800 G T ZC2HC1A Missense_Mutation p.E103D 0.05 tolerated(0.58) benign(0.013) TCGA-EE-A3JB-06 8 8234901 8234901 C T SGK223 Missense_Mutation p.G340S 0.27 benign(0.261) TCGA-EE-A3JB-06 8 87460461 87460461 G A WWP1 Missense_Mutation p.D695N 0.25 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JB-06 8 92033485 92033485 G A TMEM55A Missense_Mutation p.T85M 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 8 98288963 98288963 G A TSPYL5 Silent p.N370N 0.20 TCGA-EE-A3JB-06 8 9912149 9912149 G A MSRA Silent p.K41K 0.14 TCGA-EE-A3JB-06 9 104152888 104152888 G A MRPL50 Missense_Mutation p.P113S 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JB-06 9 115336899 115336899 C T KIAA1958 Missense_Mutation p.S180F 0.17 deleterious_low_confidence(0.01) benign(0.189) TCGA-EE-A3JB-06 9 117228674 117228674 T A DFNB31 Splice_Site p.X280_splice 0.49 TCGA-EE-A3JB-06 9 119568000 119568000 G A ASTN2 Silent p.F718F 0.43 TCGA-EE-A3JB-06 9 121929312 121929312 C A BRINP1 3'UTR 0.24 TCGA-EE-A3JB-06 9 122004357 122004357 G A BRINP1 Missense_Mutation p.H183Y 0.45 deleterious(0.02) probably_damaging(0.932) TCGA-EE-A3JB-06 9 125154627 125154627 G A PTGS1 Missense_Mutation p.G535E 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 9 125154655 125154655 G A PTGS1 Nonsense_Mutation p.W544* 0.45 TCGA-EE-A3JB-06 9 133780704 133780704 C T FIBCD1 Missense_Mutation p.G348E 0.27 deleterious(0.05) benign(0.201) TCGA-EE-A3JB-06 9 134074112 134074112 C T NUP214 Missense_Mutation p.S1744F 0.52 probably_damaging(0.919) TCGA-EE-A3JB-06 9 140358795 140358795 G A PNPLA7 Silent p.I1051I 0.45 TCGA-EE-A3JB-06 9 21971096 21971096 C T CDKN2A Missense_Mutation p.E88K 0.56 deleterious(0.04) probably_damaging(0.918) TCGA-EE-A3JB-06 9 32542037 32542037 G A TOPORS Missense_Mutation p.S829L 0.51 tolerated(0.69) unknown(0) TCGA-EE-A3JB-06 9 32632552 32632552 C T TAF1L Missense_Mutation p.G1009E 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JB-06 9 33463111 33463111 G A NOL6 Missense_Mutation p.L1071F 0.36 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JB-06 9 33798470 33798470 C T PRSS3 Intron 0.15 TCGA-EE-A3JB-06 9 35792626 35792626 C T NPR2 Missense_Mutation p.A74V 0.25 tolerated(0.56) benign(0.01) TCGA-EE-A3JB-06 9 5757382 5757382 C T KIAA1432 Silent p.F641F 0.52 TCGA-EE-A3JB-06 9 6256179 6256179 C T IL33 3'UTR 0.24 TCGA-EE-A3JB-06 9 77455013 77455013 C T TRPM6 Silent p.E157E 0.38 TCGA-EE-A3JB-06 9 79321324 79321324 G T PRUNE2 Missense_Mutation p.Q1956K 0.49 tolerated(0.19) benign(0.437) TCGA-EE-A3JB-06 9 94519598 94519598 C T ROR2 Missense_Mutation p.G140E 0.44 tolerated(0.1) possibly_damaging(0.899) TCGA-EE-A3JB-06 X 102632525 102632525 C T NGFRAP1 Nonsense_Mutation p.R36* 0.18 TCGA-EE-A3JB-06 X 103349140 103349140 G A SLC25A53 Silent p.L267L 0.09 TCGA-EE-A3JB-06 X 104464985 104464985 C T TEX13A Missense_Mutation p.E33K 0.35 tolerated(0.08) benign(0.027) TCGA-EE-A3JB-06 X 104984679 104984679 A G IL1RAPL2 Missense_Mutation p.K348R 0.07 tolerated(0.39) benign(0.13) TCGA-EE-A3JB-06 X 105450026 105450026 G A MUM1L1 Missense_Mutation p.E201K 0.16 deleterious(0.04) possibly_damaging(0.713) TCGA-EE-A3JB-06 X 105451268 105451268 G A MUM1L1 Missense_Mutation p.E615K 0.28 deleterious(0.01) possibly_damaging(0.892) TCGA-EE-A3JB-06 X 107924162 107924162 G A COL4A5 Missense_Mutation p.E1355K 0.40 benign(0.327) TCGA-EE-A3JB-06 X 117526915 117526915 T G WDR44 Silent p.L169L 0.16 TCGA-EE-A3JB-06 X 117676960 117676960 G A DOCK11 Silent p.Q97Q 0.19 TCGA-EE-A3JB-06 X 122318444 122318444 C A GRIA3 Silent p.V19V 0.18 TCGA-EE-A3JB-06 X 129200779 129200779 G A ELF4 Missense_Mutation p.L637F 0.17 deleterious(0.01) possibly_damaging(0.617) TCGA-EE-A3JB-06 X 129200780 129200780 G A ELF4 Silent p.S636S 0.17 TCGA-EE-A3JB-06 X 130409706 130409706 G A IGSF1 Missense_Mutation p.P982L 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 X 135574324 135574324 C T BRS3 Silent p.L330L 0.14 TCGA-EE-A3JB-06 X 140969331 140969331 G A MAGEC3 Missense_Mutation p.G220S 0.43 tolerated(0.19) probably_damaging(0.959) TCGA-EE-A3JB-06 X 140985474 140985474 C T MAGEC3 Silent p.I596I 0.17 TCGA-EE-A3JB-06 X 14622459 14622459 C T GLRA2 Missense_Mutation p.P173S 0.35 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JB-06 X 147088235 147088235 G A FMR1NB Silent p.R137R 0.16 TCGA-EE-A3JB-06 X 148582539 148582539 G A IDS Missense_Mutation p.P150S 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 X 14861851 14861851 C T FANCB Silent p.R806R 0.19 TCGA-EE-A3JB-06 X 14862007 14862007 G A FANCB Silent p.F754F 0.32 TCGA-EE-A3JB-06 X 148798196 148798196 C T MAGEA11 Silent p.F350F 0.13 TCGA-EE-A3JB-06 X 151869563 151869563 G A MAGEA6 Missense_Mutation p.E85K 0.24 tolerated(0.05) probably_damaging(0.948) TCGA-EE-A3JB-06 X 152958983 152958983 C T SLC6A8 Silent p.S361S 0.21 TCGA-EE-A3JB-06 X 153129835 153129835 G A L1CAM Silent p.I1088I 0.21 TCGA-EE-A3JB-06 X 153649075 153649075 G T TAZ Splice_Site p.X259_splice 0.47 TCGA-EE-A3JB-06 X 153701082 153701082 C T PLXNA3 3'UTR 0.21 TCGA-EE-A3JB-06 X 153928316 153928316 G A GAB3 Missense_Mutation p.S363F 0.33 tolerated(0.08) benign(0.043) TCGA-EE-A3JB-06 X 154132188 154132188 G A F8 Silent p.L1997L 0.15 TCGA-EE-A3JB-06 X 154159353 154159353 C T F8 Silent p.L904L 0.14 TCGA-EE-A3JB-06 X 21761899 21761899 C T SMPX Missense_Mutation p.R34K 0.38 tolerated_low_confidence(1) benign(0.003) TCGA-EE-A3JB-06 X 21996131 21996131 G T SMS Nonsense_Mutation p.E187* 0.13 TCGA-EE-A3JB-06 X 24608280 24608280 C A PCYT1B Missense_Mutation p.D116Y 0.31 deleterious(0.01) benign(0.063) TCGA-EE-A3JB-06 X 26212181 26212181 C T MAGEB6 Missense_Mutation p.P73L 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3JB-06 X 30577571 30577571 G A CXorf21 Missense_Mutation p.P301L 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3JB-06 X 34150082 34150082 G A FAM47A Missense_Mutation p.S105F 0.49 deleterious(0) benign(0.3) TCGA-EE-A3JB-06 X 37027131 37027131 G A FAM47C Silent p.E216E 0.19 TCGA-EE-A3JB-06 X 45606444 45606444 C T MIR222 RNA 0.14 TCGA-EE-A3JB-06 X 46433603 46433603 G A CHST7 Silent p.A79A 0.23 TCGA-EE-A3JB-06 X 46491083 46491083 C T SLC9A7 Missense_Mutation p.V559I 0.20 tolerated(0.11) benign(0.103) TCGA-EE-A3JB-06 X 47517189 47517189 G A UXT Nonsense_Mutation p.R70* 0.25 TCGA-EE-A3JB-06 X 48340019 48340019 G A FTSJ1 Splice_Site p.X191_splice 0.19 TCGA-EE-A3JB-06 X 50051624 50051624 C T CCNB3 Missense_Mutation p.S152F 0.22 deleterious(0.02) benign(0.07) TCGA-EE-A3JB-06 X 53654425 53654425 G A HUWE1 Silent p.I475I 0.18 TCGA-EE-A3JB-06 X 69844689 69844689 T A TEX11 Missense_Mutation p.K580M 0.20 deleterious(0) probably_damaging(0.943) TCGA-EE-A3JB-06 X 70460652 70460652 G A ZMYM3 3'UTR 0.50 TCGA-EE-A3JB-06 X 70823836 70823836 G A ACRC Missense_Mutation p.D237N 0.19 unknown(0) TCGA-EE-A3JB-06 X 71427357 71427357 C T ERCC6L Silent p.R420R 0.13 TCGA-EE-A3JB-06 X 73960442 73960442 G A KIAA2022 Missense_Mutation p.S1317F 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JB-06 X 79699004 79699004 C T FAM46D Silent p.L322L 0.45 TCGA-EE-A3JB-06 X 83128039 83128039 C T CYLC1 Missense_Mutation p.T108I 0.07 tolerated(0.3) possibly_damaging(0.643) TCGA-EE-A3JB-06 X 84502638 84502638 C T ZNF711 Silent p.T20T 0.16 TCGA-EE-A3JB-06 X 86887260 86887260 A C KLHL4 Missense_Mutation p.I459L 0.36 tolerated(0.07) benign(0.359) TCGA-EE-A3JB-06 X 9864048 9864048 C T SHROOM2 Silent p.R700R 0.16 TCGA-EE-A3JD-06 10 101829544 101829544 G A CPN1 Missense_Mutation p.T168I 0.12 deleterious(0.01) benign(0.066) TCGA-EE-A3JD-06 10 102089889 102089889 C T PKD2L1 5'UTR 0.11 TCGA-EE-A3JD-06 10 102566297 102566297 C T PAX2 Missense_Mutation p.R266W 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3JD-06 10 102748367 102748367 G A C10orf2 Missense_Mutation p.D134N 0.08 tolerated(0.37) benign(0.002) TCGA-EE-A3JD-06 10 104269022 104269022 C T SUFU Silent p.F93F 0.08 TCGA-EE-A3JD-06 10 104593873 104593873 G A CYP17A1 Missense_Mutation p.P225S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 105162876 105162876 C T PDCD11 Missense_Mutation p.S79F 0.08 deleterious(0.01) benign(0.24) TCGA-EE-A3JD-06 10 105792720 105792720 C T COL17A1 Missense_Mutation p.G1434E 0.17 unknown(0) TCGA-EE-A3JD-06 10 105798220 105798220 C T COL17A1 Missense_Mutation p.G1005D 0.12 probably_damaging(0.996) TCGA-EE-A3JD-06 10 105926419 105926419 C T WDR96 Missense_Mutation p.E956K 0.05 tolerated(0.48) benign(0.193) TCGA-EE-A3JD-06 10 106166531 106166531 G A CCDC147 Missense_Mutation p.E746K 0.07 deleterious(0.04) possibly_damaging(0.615) TCGA-EE-A3JD-06 10 107022096 107022096 C T SORCS3 Missense_Mutation p.P1151S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 112641098 112641098 A G PDCD4 Missense_Mutation p.N51D 0.13 tolerated(0.71) benign(0.03) TCGA-EE-A3JD-06 10 114168236 114168236 T A ACSL5 Nonsense_Mutation p.Y219* 0.11 TCGA-EE-A3JD-06 10 114172997 114172997 G A ACSL5 Missense_Mutation p.D395N 0.13 deleterious(0) probably_damaging(0.977) TCGA-EE-A3JD-06 10 114182125 114182125 G A ACSL5 Missense_Mutation p.D563N 0.08 tolerated(0.22) probably_damaging(0.975) TCGA-EE-A3JD-06 10 115335667 115335667 C T HABP2 Missense_Mutation p.P79S 0.04 tolerated(1) benign(0.016) TCGA-EE-A3JD-06 10 116037780 116037780 C T VWA2 Missense_Mutation p.S225L 0.16 tolerated(0.08) benign(0.019) TCGA-EE-A3JD-06 10 116100456 116100456 G A AFAP1L2 Silent p.F17F 0.08 TCGA-EE-A3JD-06 10 117093864 117093864 G A ATRNL1 Missense_Mutation p.G1037E 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 118460575 118460575 G A HSPA12A Missense_Mutation p.P107L 0.08 deleterious(0.03) benign(0.334) TCGA-EE-A3JD-06 10 118891771 118891771 A C VAX1 3'Flank 0.13 TCGA-EE-A3JD-06 10 119044645 119044645 G A PDZD8 Silent p.P533P 0.10 TCGA-EE-A3JD-06 10 120354502 120354502 G A PRLHR Silent p.I85I 0.09 TCGA-EE-A3JD-06 10 123263380 123263380 C T FGFR2 Missense_Mutation p.A456T 0.09 tolerated(0.23) benign(0.009) TCGA-EE-A3JD-06 10 123842714 123842714 C T TACC2 Silent p.G233G 0.13 TCGA-EE-A3JD-06 10 123970103 123970103 C T TACC2 Missense_Mutation p.R2055C 0.10 benign(0.03) TCGA-EE-A3JD-06 10 124094432 124094432 G A BTBD16 Missense_Mutation p.G401R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 124273720 124273720 G A HTRA1 Missense_Mutation p.E430K 0.05 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A3JD-06 10 124329689 124329689 C T DMBT1 Missense_Mutation p.P35S 0.09 tolerated_low_confidence(0.46) benign(0.077) TCGA-EE-A3JD-06 10 124339312 124339312 G A DMBT1 Missense_Mutation p.D300N 0.11 tolerated(0.28) probably_damaging(0.999) TCGA-EE-A3JD-06 10 124358371 124358371 C T DMBT1 Missense_Mutation p.S1013F 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JD-06 10 124361486 124361486 G A DMBT1 Missense_Mutation p.G1173R 0.06 deleterious(0.04) unknown(0) TCGA-EE-A3JD-06 10 125528070 125528070 G A CPXM2 Missense_Mutation p.P424L 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 125771983 125771983 A G CHST15 Missense_Mutation p.V454A 0.09 deleterious(0.03) benign(0.314) TCGA-EE-A3JD-06 10 129903788 129903788 G A MKI67 Missense_Mutation p.P2106S 0.09 tolerated(0.3) benign(0.303) TCGA-EE-A3JD-06 10 129904176 129904176 G A MKI67 Silent p.I1976I 0.05 TCGA-EE-A3JD-06 10 1313163 1313163 G A ADARB2 Silent p.I393I 0.12 TCGA-EE-A3JD-06 10 131334539 131334539 A G MGMT Missense_Mutation p.K39R 0.06 tolerated(0.3) benign(0.018) TCGA-EE-A3JD-06 10 131506165 131506165 G A MGMT Silent p.V75V 0.11 TCGA-EE-A3JD-06 10 131640552 131640552 G A EBF3 Silent p.I391I 0.08 TCGA-EE-A3JD-06 10 133930886 133930886 C T JAKMIP3 Silent p.F147F 0.09 TCGA-EE-A3JD-06 10 14861911 14861911 A G CDNF 3'Flank 0.05 TCGA-EE-A3JD-06 10 15590553 15590553 G A ITGA8 Silent p.I927I 0.11 TCGA-EE-A3JD-06 10 15714669 15714669 T A ITGA8 Missense_Mutation p.E252D 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JD-06 10 17083065 17083065 T C CUBN Silent p.E1328E 0.05 TCGA-EE-A3JD-06 10 18292127 18292127 G A SLC39A12 Missense_Mutation p.G596E 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 21124509 21124509 C T NEBL Missense_Mutation p.G461E 0.05 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A3JD-06 10 21414812 21414812 G A C10orf113 Silent p.F136F 0.07 TCGA-EE-A3JD-06 10 24873956 24873956 G A ARHGAP21 Silent p.S1754S 0.07 TCGA-EE-A3JD-06 10 24873957 24873957 G A ARHGAP21 Missense_Mutation p.S1754F 0.07 tolerated(0.05) benign(0.336) TCGA-EE-A3JD-06 10 25701206 25701206 G A GPR158 Missense_Mutation p.G380E 0.09 tolerated(0.31) benign(0.013) TCGA-EE-A3JD-06 10 27536693 27536693 C T RP11-85G18.6 Intron 0.10 TCGA-EE-A3JD-06 10 27538399 27538399 C T RP11-85G18.6 Intron 0.10 TCGA-EE-A3JD-06 10 27687621 27687621 C T PTCHD3 Missense_Mutation p.D636N 0.06 tolerated(0.18) benign(0.183) TCGA-EE-A3JD-06 10 27702367 27702367 G A PTCHD3 Silent p.A271A 0.11 TCGA-EE-A3JD-06 10 27702837 27702837 G A PTCHD3 Missense_Mutation p.H115Y 0.11 tolerated(0.07) benign(0.034) TCGA-EE-A3JD-06 10 28023626 28023626 T A MKX Missense_Mutation p.K199N 0.11 tolerated(0.14) benign(0.415) TCGA-EE-A3JD-06 10 28233271 28233271 C T ARMC4 Silent p.V541V 0.17 TCGA-EE-A3JD-06 10 28345429 28345429 C T MPP7 Missense_Mutation p.G511S 0.11 tolerated(0.47) benign(0.035) TCGA-EE-A3JD-06 10 28905197 28905197 C T WAC Missense_Mutation p.S551F 0.11 deleterious(0) benign(0.278) TCGA-EE-A3JD-06 10 30318344 30318344 C T KIAA1462 Missense_Mutation p.E245K 0.05 deleterious(0) probably_damaging(0.968) TCGA-EE-A3JD-06 10 30318556 30318556 C T KIAA1462 Missense_Mutation p.R174Q 0.07 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3JD-06 10 32594746 32594746 T C EPC1 Missense_Mutation p.I89M 0.06 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A3JD-06 10 32740822 32740822 C T CCDC7 Silent p.I84I 0.14 TCGA-EE-A3JD-06 10 34400132 34400132 G T PARD3 Missense_Mutation p.Q1346K 0.07 tolerated_low_confidence(0.1) benign(0.2) TCGA-EE-A3JD-06 10 35929515 35929515 G A FZD8 Silent p.I281I 0.12 TCGA-EE-A3JD-06 10 37430875 37430875 C T ANKRD30A Silent p.F294F 0.11 TCGA-EE-A3JD-06 10 37507968 37507968 G A ANKRD30A Missense_Mutation p.E1054K 0.15 deleterious(0) possibly_damaging(0.636) TCGA-EE-A3JD-06 10 37508226 37508226 G A ANKRD30A Missense_Mutation p.E1140K 0.07 deleterious(0.01) possibly_damaging(0.636) TCGA-EE-A3JD-06 10 395335 395335 G C DIP2C Silent p.A1015A 0.07 TCGA-EE-A3JD-06 10 44112510 44112510 C T ZNF485 Missense_Mutation p.S340F 0.09 deleterious(0.05) benign(0.313) TCGA-EE-A3JD-06 10 44871423 44871423 C T CXCL12 3'Flank 0.08 TCGA-EE-A3JD-06 10 45953816 45953816 A C MARCH8 Missense_Mutation p.I249M 0.07 tolerated(0.1) benign(0.007) TCGA-EE-A3JD-06 10 48370683 48370683 G A ZNF488 Missense_Mutation p.E51K 0.07 tolerated(0.14) probably_damaging(0.959) TCGA-EE-A3JD-06 10 48429196 48429196 C T GDF10 Silent p.R230R 0.10 TCGA-EE-A3JD-06 10 49791161 49791161 C G ARHGAP22 Missense_Mutation p.R24P 0.09 deleterious(0.05) probably_damaging(0.91) TCGA-EE-A3JD-06 10 50227676 50227676 C T VSTM4 3'UTR 0.07 TCGA-EE-A3JD-06 10 50315833 50315833 C T VSTM4 Missense_Mutation p.G88E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 50594875 50594875 C T DRGX Nonsense_Mutation p.W93* 0.07 TCGA-EE-A3JD-06 10 50684306 50684306 G A ERCC6 Silent p.F779F 0.08 TCGA-EE-A3JD-06 10 50870692 50870692 C T CHAT Missense_Mutation p.A614V 0.10 deleterious(0.03) probably_damaging(0.959) TCGA-EE-A3JD-06 10 50902647 50902647 G A C10orf53 Intron 0.09 TCGA-EE-A3JD-06 10 50952707 50952707 G A OGDHL Missense_Mutation p.S574F 0.09 deleterious(0) probably_damaging(0.957) TCGA-EE-A3JD-06 10 5246352 5246352 T G AKR1C4 Missense_Mutation p.F89V 0.11 tolerated(0.05) possibly_damaging(0.763) TCGA-EE-A3JD-06 10 5247747 5247747 G A AKR1C4 Missense_Mutation p.E133K 0.09 tolerated(0.1) benign(0.029) TCGA-EE-A3JD-06 10 52575918 52575918 G A A1CF Missense_Mutation p.S338F 0.09 tolerated(0.36) possibly_damaging(0.694) TCGA-EE-A3JD-06 10 52912969 52912969 G A PRKG1 Missense_Mutation p.M119I 0.07 deleterious(0.02) benign(0.201) TCGA-EE-A3JD-06 10 55571371 55571371 G A PCDH15 Missense_Mutation p.P1461L 0.12 tolerated_low_confidence(0.28) benign(0) TCGA-EE-A3JD-06 10 5929972 5929972 C T ANKRD16 Missense_Mutation p.E125K 0.11 tolerated(0.11) benign(0.304) TCGA-EE-A3JD-06 10 61028354 61028354 G A FAM13C Missense_Mutation p.R301W 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 61414213 61414213 G A SLC16A9 Missense_Mutation p.L191F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 61552739 61552739 G A CCDC6 Missense_Mutation p.P454L 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-EE-A3JD-06 10 61815657 61815657 C T ANK3 Missense_Mutation p.G4275E 0.08 possibly_damaging(0.573) TCGA-EE-A3JD-06 10 61828496 61828496 G A ANK3 Missense_Mutation p.S4048L 0.09 benign(0.08) TCGA-EE-A3JD-06 10 61833267 61833267 C T ANK3 Missense_Mutation p.G2458R 0.10 probably_damaging(0.998) TCGA-EE-A3JD-06 10 61926373 61926373 C T ANK3 Missense_Mutation p.E864K 0.18 benign(0.354) TCGA-EE-A3JD-06 10 63188777 63188777 C T TMEM26 Missense_Mutation p.R171Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JD-06 10 68139057 68139057 C T CTNNA3 Missense_Mutation p.D529N 0.12 tolerated(0.27) unknown(0) TCGA-EE-A3JD-06 10 68526136 68526136 G A CTNNA3 Silent p.F389F 0.18 TCGA-EE-A3JD-06 10 68940116 68940116 G A CTNNA3 Missense_Mutation p.R336C 0.10 deleterious(0) possibly_damaging(0.898) TCGA-EE-A3JD-06 10 70644563 70644563 C T STOX1 Silent p.F337F 0.12 TCGA-EE-A3JD-06 10 71654450 71654450 G A COL13A1 Missense_Mutation p.G208E 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 10 73055576 73055576 G A UNC5B Silent p.L728L 0.19 TCGA-EE-A3JD-06 10 73521639 73521639 G A C10orf54 Missense_Mutation p.S76L 0.09 deleterious(0.02) benign(0.006) TCGA-EE-A3JD-06 10 73537506 73537506 T C C10orf54 5'Flank 0.11 TCGA-EE-A3JD-06 10 74695435 74695435 G A PLA2G12B Silent p.P176P 0.07 TCGA-EE-A3JD-06 10 75157026 75157026 G A ANXA7 Missense_Mutation p.P89L 0.11 deleterious(0.05) possibly_damaging(0.713) TCGA-EE-A3JD-06 10 7679270 7679270 G A ITIH5 Silent p.I191I 0.06 TCGA-EE-A3JD-06 10 7768995 7768995 G A ITIH2 Missense_Mutation p.R356Q 0.08 tolerated(0.14) probably_damaging(0.998) TCGA-EE-A3JD-06 10 78669819 78669819 C T KCNMA1 Missense_Mutation p.D1001N 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A3JD-06 10 8051084 8051084 C T TAF3 Missense_Mutation p.P787S 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-EE-A3JD-06 10 81056448 81056448 C T ZMIZ1 Intron 0.07 TCGA-EE-A3JD-06 10 81317193 81317193 G A SFTPA2 Silent p.A173A 0.06 TCGA-EE-A3JD-06 10 81317194 81317194 G A SFTPA2 Missense_Mutation p.A173V 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 81373677 81373677 C T SFTPA1 Silent p.A200A 0.09 TCGA-EE-A3JD-06 10 81702255 81702255 G A SFTPD Missense_Mutation p.P108S 0.09 deleterious(0.05) possibly_damaging(0.857) TCGA-EE-A3JD-06 10 84744883 84744883 G A NRG3 Missense_Mutation p.R538Q 0.12 tolerated(1) benign(0.003) TCGA-EE-A3JD-06 10 85984787 85984787 G A LRIT2 Missense_Mutation p.S65L 0.07 deleterious(0.03) possibly_damaging(0.904) TCGA-EE-A3JD-06 10 85984833 85984833 G A LRIT2 Missense_Mutation p.P50S 0.09 deleterious(0.04) probably_damaging(0.978) TCGA-EE-A3JD-06 10 85991648 85991648 G A LRIT1 3'UTR 0.15 TCGA-EE-A3JD-06 10 87966238 87966238 C T GRID1 Missense_Mutation p.D135N 0.10 tolerated(0.15) benign(0.255) TCGA-EE-A3JD-06 10 88211797 88211797 G A WAPAL Missense_Mutation p.S1014F 0.09 tolerated(0.07) probably_damaging(0.981) TCGA-EE-A3JD-06 10 88428402 88428402 A G LDB3 Intron 0.18 TCGA-EE-A3JD-06 10 88696643 88696643 C T MMRN2 Missense_Mutation p.G903R 0.09 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 10 90974677 90974677 G A LIPA Missense_Mutation p.P370S 0.09 tolerated(0.11) possibly_damaging(0.825) TCGA-EE-A3JD-06 10 94617 94617 G A TUBB8 Missense_Mutation p.T72I 0.08 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-EE-A3JD-06 10 95372375 95372375 G A PDE6C 5'UTR 0.14 TCGA-EE-A3JD-06 10 95719891 95719891 G A PIPSL RNA 0.09 TCGA-EE-A3JD-06 10 95720901 95720901 G A PIPSL RNA 0.08 TCGA-EE-A3JD-06 10 95849050 95849050 G A PLCE1 Intron 0.09 TCGA-EE-A3JD-06 10 96110005 96110005 G A NOC3L Silent p.S331S 0.09 TCGA-EE-A3JD-06 10 96333775 96333775 C T HELLS Missense_Mutation p.S179L 0.10 deleterious(0.01) benign(0.158) TCGA-EE-A3JD-06 10 96354526 96354526 C T HELLS Silent p.R721R 0.09 TCGA-EE-A3JD-06 10 96540377 96540377 G A CYP2C19 Silent p.L201L 0.12 TCGA-EE-A3JD-06 10 96541742 96541742 C T CYP2C19 Silent p.I269I 0.08 TCGA-EE-A3JD-06 10 96826983 96826983 C T CYP2C8 Missense_Mutation p.E155K 0.06 deleterious(0.03) probably_damaging(0.947) TCGA-EE-A3JD-06 10 96997851 96997851 A C PDLIM1 Missense_Mutation p.L274R 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3JD-06 10 97023694 97023694 C T PDLIM1 Missense_Mutation p.E154K 0.12 tolerated(0.43) benign(0.354) TCGA-EE-A3JD-06 10 97371042 97371042 G A ALDH18A1 Missense_Mutation p.S694F 0.09 deleterious(0.03) benign(0.028) TCGA-EE-A3JD-06 10 97402889 97402889 G A ALDH18A1 Missense_Mutation p.R55C 0.06 deleterious(0) possibly_damaging(0.8) TCGA-EE-A3JD-06 10 98763836 98763836 A C SLIT1 Missense_Mutation p.L1285R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 10 99410789 99410789 C T PI4K2A Missense_Mutation p.P146L 0.13 deleterious(0.04) possibly_damaging(0.893) TCGA-EE-A3JD-06 11 104897586 104897586 C T CASP1 Missense_Mutation p.E367K 0.12 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A3JD-06 11 11354310 11354310 G A GALNT18 Silent p.T449T 0.11 TCGA-EE-A3JD-06 11 11354311 11354311 G A GALNT18 Missense_Mutation p.T449I 0.10 deleterious(0.01) possibly_damaging(0.649) TCGA-EE-A3JD-06 11 113673885 113673885 G A USP28 Missense_Mutation p.L953F 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 11 11400800 11400800 C T GALNT18 Missense_Mutation p.E203K 0.11 tolerated(0.91) benign(0.371) TCGA-EE-A3JD-06 11 114400916 114400916 C T NXPE1 Missense_Mutation p.E130K 0.09 tolerated(0.07) possibly_damaging(0.893) TCGA-EE-A3JD-06 11 115085432 115085432 T C CADM1 Missense_Mutation p.N297S 0.07 tolerated(0.47) benign(0.128) TCGA-EE-A3JD-06 11 117056931 117056931 G A SIDT2 Silent p.E318E 0.10 TCGA-EE-A3JD-06 11 117973868 117973868 C T TMPRSS4 Silent p.F70F 0.07 TCGA-EE-A3JD-06 11 118425749 118425749 G A IFT46 Missense_Mutation p.P155S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 11 119986103 119986103 C T TRIM29 Silent p.R549R 0.10 TCGA-EE-A3JD-06 11 120776035 120776035 G A GRIK4 Missense_Mutation p.E437K 0.05 tolerated(0.69) benign(0.239) TCGA-EE-A3JD-06 11 121500260 121500260 G A SORL1 Missense_Mutation p.M2211I 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A3JD-06 11 12231071 12231071 C T MICAL2 Missense_Mutation p.P206L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 11 12341302 12341302 A G MICALCL Missense_Mutation p.T496A 0.09 deleterious(0.05) benign(0.146) TCGA-EE-A3JD-06 11 123810344 123810344 C T OR4D5 Silent p.S7S 0.13 TCGA-EE-A3JD-06 11 123813930 123813930 C T OR6T1 Missense_Mutation p.V206M 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-EE-A3JD-06 11 124189925 124189925 G A OR8D2 Missense_Mutation p.P57S 0.10 tolerated(0.17) benign(0) TCGA-EE-A3JD-06 11 124440137 124440137 G A OR8A1 Missense_Mutation p.G58E 0.10 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 11 124805822 124805822 C T HEPACAM Silent p.Q27Q 0.14 TCGA-EE-A3JD-06 11 125647862 125647862 G A PATE2 Missense_Mutation p.H38Y 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JD-06 11 1269527 1269527 G A MUC5B Nonsense_Mutation p.W3806* 0.06 TCGA-EE-A3JD-06 11 1271053 1271053 G A MUC5B Missense_Mutation p.A4315T 0.11 benign(0.008) TCGA-EE-A3JD-06 11 1271930 1271930 C T MUC5B Missense_Mutation p.S4607F 0.08 unknown(0) TCGA-EE-A3JD-06 11 129747256 129747256 G A NFRKB Silent p.P537P 0.09 TCGA-EE-A3JD-06 11 130064064 130064064 C T ST14 Missense_Mutation p.P299L 0.09 deleterious(0) probably_damaging(0.948) TCGA-EE-A3JD-06 11 1629518 1629518 G A KRTAP5-3 Missense_Mutation p.S33F 0.13 deleterious(0.03) unknown(0) TCGA-EE-A3JD-06 11 1651402 1651402 C T KRTAP5-5 Missense_Mutation p.S111F 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3JD-06 11 16810706 16810706 C T PLEKHA7 Silent p.G1098G 0.11 TCGA-EE-A3JD-06 11 17542924 17542924 C T USH1C Missense_Mutation p.E352K 0.06 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EE-A3JD-06 11 1862075 1862075 G A TNNI2 Silent p.K71K 0.06 TCGA-EE-A3JD-06 11 19209744 19209744 C T CSRP3 Missense_Mutation p.G74R 0.07 deleterious(0) probably_damaging(0.97) TCGA-EE-A3JD-06 11 19247118 19247118 G A E2F8 Missense_Mutation p.P691S 0.10 tolerated(0.07) benign(0.382) TCGA-EE-A3JD-06 11 20077441 20077441 C T NAV2 Missense_Mutation p.S1613F 0.10 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 11 20625867 20625867 G A SLC6A5 Silent p.G192G 0.08 TCGA-EE-A3JD-06 11 209481 209481 T A RIC8A Missense_Mutation p.S69R 0.06 deleterious(0) possibly_damaging(0.776) TCGA-EE-A3JD-06 11 22382474 22382474 G A SLC17A6 Nonsense_Mutation p.W202* 0.08 TCGA-EE-A3JD-06 11 22398151 22398151 C T SLC17A6 Missense_Mutation p.S449L 0.11 deleterious(0) possibly_damaging(0.848) TCGA-EE-A3JD-06 11 2432591 2432591 C T TRPM5 Missense_Mutation p.E925K 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-EE-A3JD-06 11 26734223 26734223 G A SLC5A12 Missense_Mutation p.R124C 0.09 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JD-06 11 27016436 27016436 G A FIBIN Silent p.R121R 0.07 TCGA-EE-A3JD-06 11 30601897 30601897 T G MPPED2 Missense_Mutation p.Q8H 0.09 tolerated(1) benign(0) TCGA-EE-A3JD-06 11 30926546 30926546 G A DCDC1 Missense_Mutation p.R1424C 0.10 deleterious(0.02) possibly_damaging(0.835) TCGA-EE-A3JD-06 11 32124957 32124957 C T RCN1 Silent p.I273I 0.05 TCGA-EE-A3JD-06 11 34192558 34192558 G A ABTB2 Silent p.F486F 0.10 TCGA-EE-A3JD-06 11 36614248 36614248 G A RAG2 Missense_Mutation p.P491S 0.09 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 11 3681549 3681549 G A ART1 Missense_Mutation p.R267Q 0.10 tolerated(0.2) benign(0.064) TCGA-EE-A3JD-06 11 40137139 40137139 C T LRRC4C Missense_Mutation p.R235K 0.08 tolerated(0.51) benign(0) TCGA-EE-A3JD-06 11 4510979 4510979 C T OR52K1 Silent p.L283L 0.08 TCGA-EE-A3JD-06 11 4566516 4566516 C T OR52M1 Silent p.P32P 0.10 TCGA-EE-A3JD-06 11 45931683 45931683 G C PEX16 Missense_Mutation p.T333R 0.09 tolerated_low_confidence(0.21) benign(0.01) TCGA-EE-A3JD-06 11 4608904 4608904 T A OR52I2 Missense_Mutation p.S288T 0.05 tolerated(0.08) probably_damaging(1) TCGA-EE-A3JD-06 11 47640420 47640420 T C MTCH2 Missense_Mutation p.K293E 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-EE-A3JD-06 11 4790321 4790321 G A OR51F1 Missense_Mutation p.S276L 0.08 deleterious(0.05) benign(0.385) TCGA-EE-A3JD-06 11 48161054 48161054 C T PTPRJ Silent p.A723A 0.10 TCGA-EE-A3JD-06 11 48510864 48510864 C T OR4A47 Missense_Mutation p.H174Y 0.08 deleterious_low_confidence(0.01) benign(0.4) TCGA-EE-A3JD-06 11 4869526 4869526 C T OR51S1 Missense_Mutation p.E305K 0.07 deleterious(0.04) possibly_damaging(0.64) TCGA-EE-A3JD-06 11 4967600 4967600 G A OR51A4 Missense_Mutation p.S244L 0.10 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JD-06 11 4976132 4976132 G A OR51A2 Missense_Mutation p.P271L 0.12 deleterious(0.03) benign(0.168) TCGA-EE-A3JD-06 11 5172912 5172912 G A OR52A1 Missense_Mutation p.R230C 0.06 deleterious(0.03) benign(0.052) TCGA-EE-A3JD-06 11 5221123 5221123 C T OR51V1 Missense_Mutation p.V270M 0.14 deleterious(0.05) possibly_damaging(0.86) TCGA-EE-A3JD-06 11 5221124 5221124 C T OR51V1 Missense_Mutation p.M269I 0.14 tolerated(0.31) benign(0.088) TCGA-EE-A3JD-06 11 5411211 5411211 G A OR51M1 Missense_Mutation p.E195K 0.10 deleterious(0) possibly_damaging(0.488) TCGA-EE-A3JD-06 11 5443930 5443930 G A OR51Q1 Missense_Mutation p.R167Q 0.10 tolerated(0.08) benign(0.229) TCGA-EE-A3JD-06 11 5461933 5461933 G A OR51I1 Missense_Mutation p.P271L 0.08 deleterious(0.01) possibly_damaging(0.872) TCGA-EE-A3JD-06 11 5462101 5462101 A G OR51I1 Missense_Mutation p.F215S 0.19 tolerated(0.05) possibly_damaging(0.688) TCGA-EE-A3JD-06 11 55682056 55682056 C T OR5W2 Translation_Start_Site p.M1? 0.08 deleterious(0.02) benign(0.259) TCGA-EE-A3JD-06 11 55735698 55735698 C T OR10AG1 Missense_Mutation p.G81E 0.09 deleterious(0.04) benign(0.167) TCGA-EE-A3JD-06 11 55798166 55798166 G A OR5AS1 Missense_Mutation p.S91N 0.11 tolerated(0.06) benign(0.007) TCGA-EE-A3JD-06 11 55873319 55873319 C T OR8H2 Silent p.S267S 0.11 TCGA-EE-A3JD-06 11 55905102 55905102 G A OR8J3 Silent p.F31F 0.10 TCGA-EE-A3JD-06 11 55999633 55999633 C A OR5T2 Missense_Mutation p.M343I 0.10 tolerated(0.34) benign(0) TCGA-EE-A3JD-06 11 56000423 56000423 C T OR5T2 Missense_Mutation p.G80E 0.09 deleterious(0) benign(0.417) TCGA-EE-A3JD-06 11 56019765 56019765 G A OR5T3 Silent p.R30R 0.09 TCGA-EE-A3JD-06 11 56043848 56043848 G A OR5T1 Missense_Mutation p.G245E 0.06 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JD-06 11 56128031 56128031 G A OR8J1 Silent p.G103G 0.10 TCGA-EE-A3JD-06 11 56128248 56128248 C T OR8J1 Missense_Mutation p.H176Y 0.09 deleterious(0.03) possibly_damaging(0.86) TCGA-EE-A3JD-06 11 56143197 56143197 C T OR8U1 Missense_Mutation p.S33F 0.09 tolerated(0.1) benign(0.005) TCGA-EE-A3JD-06 11 56310489 56310489 G A OR5M11 Missense_Mutation p.S82L 0.10 tolerated(1) benign(0) TCGA-EE-A3JD-06 11 56431749 56431749 G A OR5AR1 Silent p.E196E 0.13 TCGA-EE-A3JD-06 11 57313818 57313818 G A SMTNL1 Missense_Mutation p.E414K 0.15 tolerated(0.07) probably_damaging(0.979) TCGA-EE-A3JD-06 11 5775970 5775970 C T OR52N4 5'UTR 0.13 TCGA-EE-A3JD-06 11 57970729 57970729 C T OR1S2 Missense_Mutation p.D309N 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 11 57971536 57971536 G A OR1S2 Missense_Mutation p.L40F 0.09 tolerated(0.24) possibly_damaging(0.807) TCGA-EE-A3JD-06 11 5798961 5798961 A G OR52N5 Missense_Mutation p.Y302H 0.08 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JD-06 11 5863071 5863071 G A OR52E6 Silent p.I19I 0.08 TCGA-EE-A3JD-06 11 59132414 59132414 T C OR5AN1 Silent p.I161I 0.08 TCGA-EE-A3JD-06 11 59132584 59132584 C T OR5AN1 Missense_Mutation p.S218F 0.06 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 11 59190014 59190014 G C OR5A2 Missense_Mutation p.S138C 0.11 deleterious(0.01) possibly_damaging(0.759) TCGA-EE-A3JD-06 11 59623392 59623392 C T TCN1 Missense_Mutation p.G296E 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 11 59807846 59807846 A G OOSP2 5'UTR 0.09 TCGA-EE-A3JD-06 11 59828636 59828636 G A MS4A3 Translation_Start_Site p.M1? 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3JD-06 11 60201273 60201273 C T MS4A5 Silent p.A125A 0.07 TCGA-EE-A3JD-06 11 6048686 6048686 G A OR56A1 Silent p.T83T 0.11 TCGA-EE-A3JD-06 11 60640706 60640706 C T ZP1 Missense_Mutation p.S395L 0.08 tolerated(0.59) benign(0.024) TCGA-EE-A3JD-06 11 60689406 60689406 C T TMEM109 Silent p.I167I 0.10 TCGA-EE-A3JD-06 11 60709553 60709553 G A SLC15A3 Missense_Mutation p.P354L 0.09 tolerated(0.06) benign(0.025) TCGA-EE-A3JD-06 11 60886789 60886789 G A CD5 Missense_Mutation p.G183S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 11 61070607 61070607 G A DDB1 Silent p.P951P 0.11 TCGA-EE-A3JD-06 11 6191299 6191299 G A OR52B2 Silent p.I86I 0.09 TCGA-EE-A3JD-06 11 62291010 62291010 G A AHNAK Missense_Mutation p.P3627S 0.07 benign(0.025) TCGA-EE-A3JD-06 11 6231359 6231359 G A C11orf42 Missense_Mutation p.G118R 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 11 6245703 6245703 G A FAM160A2 Missense_Mutation p.P15L 0.10 deleterious(0.03) benign(0.022) TCGA-EE-A3JD-06 11 62677831 62677831 C T CHRM1 Missense_Mutation p.A248T 0.16 tolerated(0.67) benign(0.001) TCGA-EE-A3JD-06 11 63233701 63233701 C T HRASLS5 Missense_Mutation p.D210N 0.10 tolerated(0.28) probably_damaging(1) TCGA-EE-A3JD-06 11 63276383 63276383 G A LGALS12 Missense_Mutation p.E121K 0.13 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 11 63327644 63327644 C T HRASLS2 Missense_Mutation p.G11R 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 11 64326684 64326684 C T SLC22A11 Silent p.S157S 0.09 TCGA-EE-A3JD-06 11 64337275 64337275 C T SLC22A11 Missense_Mutation p.L512F 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 11 64453331 64453331 C T NRXN2 Silent p.E313E 0.08 TCGA-EE-A3JD-06 11 64494806 64494806 C T RASGRP2 Missense_Mutation p.V600M 0.09 deleterious_low_confidence(0.01) benign(0.421) TCGA-EE-A3JD-06 11 64595227 64595227 G A CDC42BPG Silent p.F1332F 0.07 TCGA-EE-A3JD-06 11 64665636 64665636 G A ATG2A Missense_Mutation p.L1594F 0.06 deleterious(0) possibly_damaging(0.795) TCGA-EE-A3JD-06 11 64684437 64684437 C T ATG2A Nonsense_Mutation p.W57* 0.09 TCGA-EE-A3JD-06 11 65273616 65273616 C T MALAT1 RNA 0.12 TCGA-EE-A3JD-06 11 65359559 65359559 G A EHBP1L1 Silent p.R1490R 0.12 TCGA-EE-A3JD-06 11 65824770 65824770 C T SF3B2 Missense_Mutation p.P234L 0.06 tolerated_low_confidence(0.18) possibly_damaging(0.521) TCGA-EE-A3JD-06 11 66039951 66039951 C T RAB1B Intron 0.17 TCGA-EE-A3JD-06 11 66100813 66100813 G A RIN1 Silent p.T597T 0.13 TCGA-EE-A3JD-06 11 66114102 66114102 G A B3GNT1 Silent p.V305V 0.09 TCGA-EE-A3JD-06 11 66294177 66294177 G A BBS1 Missense_Mutation p.S413N 0.06 tolerated(0.36) benign(0.191) TCGA-EE-A3JD-06 11 66359357 66359357 C T CCDC87 Missense_Mutation p.G377D 0.09 tolerated(0.4) benign(0.012) TCGA-EE-A3JD-06 11 66454513 66454513 C T SPTBN2 Missense_Mutation p.G2283D 0.09 deleterious(0) benign(0.11) TCGA-EE-A3JD-06 11 66454514 66454514 C T SPTBN2 Missense_Mutation p.G2283S 0.09 tolerated(0.17) benign(0.003) TCGA-EE-A3JD-06 11 66626556 66626556 C T LRFN4 Silent p.L447L 0.16 TCGA-EE-A3JD-06 11 66807513 66807513 G A SYT12 Missense_Mutation p.G154S 0.08 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 11 66999121 66999121 C T KDM2A Missense_Mutation p.S390F 0.18 deleterious(0.04) benign(0.001) TCGA-EE-A3JD-06 11 67020265 67020265 C T KDM2A Missense_Mutation p.L957F 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 11 67816614 67816614 C T TCIRG1 Silent p.L580L 0.08 TCGA-EE-A3JD-06 11 68181170 68181170 C T LRP5 Silent p.V839V 0.07 TCGA-EE-A3JD-06 11 68671265 68671265 G A MRPL21 Missense_Mutation p.S5F 0.11 deleterious_low_confidence(0.03) benign(0.011) TCGA-EE-A3JD-06 11 68675728 68675728 C T IGHMBP2 Silent p.F124F 0.09 TCGA-EE-A3JD-06 11 6891546 6891546 C T OR10A2 Silent p.I187I 0.09 TCGA-EE-A3JD-06 11 6891746 6891746 C T OR10A2 Missense_Mutation p.S254L 0.07 deleterious(0.04) possibly_damaging(0.892) TCGA-EE-A3JD-06 11 6898467 6898467 G A OR10A4 Missense_Mutation p.E197K 0.08 deleterious(0.04) probably_damaging(1) TCGA-EE-A3JD-06 11 6942668 6942668 C T OR2D3 Silent p.L146L 0.09 TCGA-EE-A3JD-06 11 7092468 7092468 C T NLRP14 Missense_Mutation p.P1071S 0.12 tolerated(0.05) benign(0.4) TCGA-EE-A3JD-06 11 71152365 71152365 G A DHCR7 Silent p.I178I 0.12 TCGA-EE-A3JD-06 11 72945257 72945257 G A P2RY2 Missense_Mutation p.G18E 0.06 tolerated(0.3) benign(0.028) TCGA-EE-A3JD-06 11 7324301 7324301 C T SYT9 Silent p.V59V 0.07 TCGA-EE-A3JD-06 11 73680333 73680333 C T DNAJB13 Missense_Mutation p.R255C 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 11 73680366 73680366 C T DNAJB13 Missense_Mutation p.H266Y 0.11 tolerated(0.1) benign(0.051) TCGA-EE-A3JD-06 11 74329632 74329632 C T POLD3 Missense_Mutation p.S148F 0.05 tolerated(0.72) possibly_damaging(0.788) TCGA-EE-A3JD-06 11 74329633 74329633 C T POLD3 Silent p.S148S 0.06 TCGA-EE-A3JD-06 11 75440017 75440017 G A MOGAT2 Missense_Mutation p.R278Q 0.07 tolerated(0.22) benign(0.025) TCGA-EE-A3JD-06 11 76062722 76062722 G A PRKRIR Missense_Mutation p.S491F 0.09 deleterious(0.02) possibly_damaging(0.762) TCGA-EE-A3JD-06 11 76371305 76371305 G A LRRC32 Silent p.S444S 0.19 TCGA-EE-A3JD-06 11 76900501 76900501 G A MYO7A Missense_Mutation p.E1206K 0.10 deleterious(0.02) possibly_damaging(0.475) TCGA-EE-A3JD-06 11 7949864 7949864 C T OR10A6 Missense_Mutation p.G116R 0.09 deleterious(0) possibly_damaging(0.617) TCGA-EE-A3JD-06 11 7984965 7984965 C T NLRP10 Silent p.K26K 0.08 TCGA-EE-A3JD-06 11 8008883 8008883 C T EIF3F 5'UTR 0.07 TCGA-EE-A3JD-06 11 8008884 8008884 C T EIF3F 5'UTR 0.06 TCGA-EE-A3JD-06 11 89537428 89537428 C T TRIM49 Silent p.L70L 0.09 TCGA-EE-A3JD-06 11 9051441 9051441 G A SCUBE2 Silent p.T774T 0.06 TCGA-EE-A3JD-06 11 9090993 9090993 C T SCUBE2 Silent p.K189K 0.08 TCGA-EE-A3JD-06 11 92532375 92532375 G A FAT3 Missense_Mutation p.A2066T 0.14 probably_damaging(1) TCGA-EE-A3JD-06 11 93836151 93836151 C T HEPHL1 Missense_Mutation p.P883S 0.06 tolerated(0.57) benign(0.015) TCGA-EE-A3JD-06 11 94113902 94113902 G A GPR83 Missense_Mutation p.P229S 0.07 deleterious(0.03) probably_damaging(0.919) TCGA-EE-A3JD-06 11 94129654 94129654 C G GPR83 Missense_Mutation p.G142R 0.08 tolerated(0.56) possibly_damaging(0.673) TCGA-EE-A3JD-06 11 94153332 94153332 G A MRE11A Missense_Mutation p.P696S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EE-A3JD-06 12 100660858 100660858 C T SCYL2 5'Flank 0.06 TCGA-EE-A3JD-06 12 100711595 100711595 C T SCYL2 Silent p.F429F 0.11 TCGA-EE-A3JD-06 12 101477456 101477456 G A ANO4 Missense_Mutation p.E431K 0.15 deleterious(0) possibly_damaging(0.874) TCGA-EE-A3JD-06 12 101587405 101587405 C T SLC5A8 Nonsense_Mutation p.W230* 0.08 TCGA-EE-A3JD-06 12 101603377 101603377 T C SLC5A8 Missense_Mutation p.I84V 0.10 tolerated(0.7) benign(0.003) TCGA-EE-A3JD-06 12 101740241 101740241 G A UTP20 Missense_Mutation p.A1587T 0.09 deleterious(0.01) benign(0.097) TCGA-EE-A3JD-06 12 101880426 101880426 G A SPIC Silent p.G208G 0.08 TCGA-EE-A3JD-06 12 101880566 101880566 C T SPIC 3'UTR 0.10 TCGA-EE-A3JD-06 12 102054994 102054994 C T MYBPC1 Silent p.I637I 0.19 TCGA-EE-A3JD-06 12 103248989 103248989 G A PAH Missense_Mutation p.P211S 0.09 deleterious(0.04) probably_damaging(0.98) TCGA-EE-A3JD-06 12 103988233 103988233 G A STAB2 Silent p.R92R 0.07 TCGA-EE-A3JD-06 12 104071234 104071234 G A STAB2 Missense_Mutation p.E884K 0.08 tolerated(0.5) possibly_damaging(0.713) TCGA-EE-A3JD-06 12 10464126 10464126 C T KLRD1 Missense_Mutation p.S76F 0.10 tolerated(0.1) probably_damaging(0.966) TCGA-EE-A3JD-06 12 10562080 10562080 G A KLRC4 Missense_Mutation p.S32L 0.08 tolerated(0.14) benign(0.311) TCGA-EE-A3JD-06 12 10569321 10569321 G A KLRC3 Missense_Mutation p.R178C 0.09 tolerated(0.06) possibly_damaging(0.838) TCGA-EE-A3JD-06 12 106477677 106477677 C T NUAK1 Missense_Mutation p.E182K 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 12 106704926 106704926 G A TCP11L2 Missense_Mutation p.E25K 0.09 deleterious(0.05) possibly_damaging(0.484) TCGA-EE-A3JD-06 12 107236364 107236364 C T RIC8B Intron 0.10 TCGA-EE-A3JD-06 12 107712800 107712800 C T BTBD11 Missense_Mutation p.S28L 0.09 deleterious(0) unknown(0) TCGA-EE-A3JD-06 12 10774548 10774548 G A STYK1 Missense_Mutation p.P331S 0.07 tolerated(0.1) probably_damaging(1) TCGA-EE-A3JD-06 12 10777287 10777287 G A STYK1 Missense_Mutation p.R297W 0.11 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JD-06 12 108603974 108603974 G A WSCD2 Missense_Mutation p.E192K 0.14 tolerated(0.39) benign(0.342) TCGA-EE-A3JD-06 12 109017296 109017296 G A SELPLG Missense_Mutation p.S279F 0.07 tolerated(0.1) probably_damaging(0.988) TCGA-EE-A3JD-06 12 109509434 109509434 C T USP30 Silent p.F166F 0.09 TCGA-EE-A3JD-06 12 110778504 110778504 C T ATP2A2 Missense_Mutation p.P601L 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 111746259 111746259 T C CUX2 Missense_Mutation p.L396P 0.16 deleterious(0) probably_damaging(0.94) TCGA-EE-A3JD-06 12 113382387 113382387 G A OAS3 Silent p.R189R 0.08 TCGA-EE-A3JD-06 12 113405798 113405798 C T OAS3 Silent p.L975L 0.08 TCGA-EE-A3JD-06 12 113424927 113424927 C T OAS2 Nonsense_Mutation p.Q88* 0.08 TCGA-EE-A3JD-06 12 113435491 113435491 G A OAS2 Nonsense_Mutation p.W265* 0.12 TCGA-EE-A3JD-06 12 113448259 113448259 C T OAS2 Silent p.I710I 0.10 TCGA-EE-A3JD-06 12 113633433 113633433 C T IQCD Missense_Mutation p.D331N 0.09 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 12 113831782 113831782 C T SDS Silent p.Q231Q 0.09 TCGA-EE-A3JD-06 12 114395761 114395761 A T RBM19 Silent p.S222S 0.10 TCGA-EE-A3JD-06 12 114395762 114395762 G A RBM19 Missense_Mutation p.S222F 0.10 deleterious(0) benign(0.418) TCGA-EE-A3JD-06 12 117914303 117914303 G A KSR2 Missense_Mutation p.P850S 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3JD-06 12 117977619 117977619 G A KSR2 Missense_Mutation p.S531L 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 12 118533403 118533403 C T VSIG10 Missense_Mutation p.G99E 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 119594328 119594328 C T SRRM4 Missense_Mutation p.R521W 0.15 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 12 119954511 119954511 A G CCDC60 Missense_Mutation p.S323G 0.22 deleterious(0.04) possibly_damaging(0.848) TCGA-EE-A3JD-06 12 120582780 120582780 A G GCN1L1 Missense_Mutation p.M1701T 0.07 probably_damaging(0.98) TCGA-EE-A3JD-06 12 122079402 122079402 C T ORAI1 Silent p.F255F 0.13 TCGA-EE-A3JD-06 12 122623075 122623075 C T MLXIP Silent p.I787I 0.18 TCGA-EE-A3JD-06 12 123276650 123276650 G A CCDC62 Missense_Mutation p.D252N 0.07 tolerated(0.4) probably_damaging(0.999) TCGA-EE-A3JD-06 12 125834065 125834065 G A TMEM132B Silent p.T40T 0.08 TCGA-EE-A3JD-06 12 126128661 126128661 G A TMEM132B Missense_Mutation p.E488K 0.07 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3JD-06 12 126137058 126137058 C T TMEM132B Silent p.I657I 0.07 TCGA-EE-A3JD-06 12 126139151 126139151 C T TMEM132B Silent p.I1044I 0.08 TCGA-EE-A3JD-06 12 12630651 12630651 C T DUSP16 Missense_Mutation p.E372K 0.14 tolerated(0.25) benign(0.15) TCGA-EE-A3JD-06 12 12633225 12633225 G A DUSP16 Silent p.S249S 0.09 TCGA-EE-A3JD-06 12 130926783 130926783 C T RIMBP2 Missense_Mutation p.E355K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 12 13128335 13128335 G A HEBP1 Silent p.A159A 0.10 TCGA-EE-A3JD-06 12 132426289 132426289 C T PUS1 Silent p.L333L 0.09 TCGA-EE-A3JD-06 12 132530313 132530313 C T EP400 Silent p.I2356I 0.11 TCGA-EE-A3JD-06 12 133198670 133198670 A G P2RX2 3'Flank 0.15 TCGA-EE-A3JD-06 12 133418169 133418169 T A CHFR Missense_Mutation p.I656F 0.09 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 12 13717043 13717043 G A GRIN2B Silent p.S1043S 0.09 TCGA-EE-A3JD-06 12 14689560 14689560 C T PLBD1 Missense_Mutation p.G215S 0.10 tolerated(1) benign(0) TCGA-EE-A3JD-06 12 14778729 14778729 C T GUCY2C Silent p.R790R 0.11 TCGA-EE-A3JD-06 12 15734686 15734686 C T PTPRO Missense_Mutation p.S1069L 0.12 deleterious(0.01) benign(0.334) TCGA-EE-A3JD-06 12 15777212 15777212 G A EPS8 Missense_Mutation p.S725F 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 12 16507210 16507210 G A MGST1 Missense_Mutation p.M8I 0.13 tolerated(0.73) benign(0.001) TCGA-EE-A3JD-06 12 18242180 18242180 G A RERGL Missense_Mutation p.S13F 0.10 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-EE-A3JD-06 12 18891372 18891372 A G CAPZA3 Missense_Mutation p.Q57R 0.15 tolerated(0.2) benign(0.02) TCGA-EE-A3JD-06 12 18891842 18891842 G A CAPZA3 Missense_Mutation p.E214K 0.16 tolerated(0.84) possibly_damaging(0.534) TCGA-EE-A3JD-06 12 1965396 1965396 C T CACNA2D4 Splice_Site p.X670_splice 0.08 TCGA-EE-A3JD-06 12 20522961 20522961 G A PDE3A Missense_Mutation p.G248E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 208322 208322 G A IQSEC3 Missense_Mutation p.V189M 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 12 20903668 20903668 G A SLCO1C1 Missense_Mutation p.G620R 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3JD-06 12 20903669 20903669 G A SLCO1C1 Missense_Mutation p.G620E 0.09 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JD-06 12 21032384 21032384 C T SLCO1B3 Missense_Mutation p.P384S 0.13 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JD-06 12 21036450 21036450 G A SLCO1B3 Silent p.R532R 0.08 TCGA-EE-A3JD-06 12 22012526 22012526 G A ABCC9 Silent p.V833V 0.09 TCGA-EE-A3JD-06 12 25249938 25249938 G A LRMP Missense_Mutation p.R234Q 0.12 deleterious(0.01) probably_damaging(0.942) TCGA-EE-A3JD-06 12 26217629 26217629 T C RASSF8 Missense_Mutation p.L101S 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JD-06 12 26731734 26731734 T C ITPR2 Silent p.Q1514Q 0.09 TCGA-EE-A3JD-06 12 2944067 2944067 C T NRIP2 Missense_Mutation p.G28E 0.09 tolerated_low_confidence(0.09) benign(0.005) TCGA-EE-A3JD-06 12 33559749 33559749 C T SYT10 Nonsense_Mutation p.W351* 0.09 TCGA-EE-A3JD-06 12 43769304 43769304 G A ADAMTS20 Missense_Mutation p.P1775L 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 438196 438196 C T KDM5A Splice_Site p.X592_splice 0.12 TCGA-EE-A3JD-06 12 43833491 43833491 C T ADAMTS20 Missense_Mutation p.E843K 0.09 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A3JD-06 12 44142400 44142400 C T PUS7L Missense_Mutation p.R308Q 0.11 tolerated(0.74) benign(0.017) TCGA-EE-A3JD-06 12 4543502 4543502 T A FGF6 Missense_Mutation p.N169I 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 47172397 47172397 G A SLC38A4 Missense_Mutation p.P294S 0.06 tolerated(0.38) benign(0.001) TCGA-EE-A3JD-06 12 4736296 4736296 C T AKAP3 Missense_Mutation p.R591K 0.09 tolerated(0.92) benign(0.002) TCGA-EE-A3JD-06 12 47471806 47471806 T C AMIGO2 Missense_Mutation p.D327G 0.05 tolerated(0.54) benign(0.012) TCGA-EE-A3JD-06 12 47629015 47629015 G A PCED1B Missense_Mutation p.E57K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 12 48107073 48107073 C T ENDOU Missense_Mutation p.E284K 0.07 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A3JD-06 12 48963707 48963707 C T LALBA Missense_Mutation p.D33N 0.12 tolerated(0.18) benign(0.008) TCGA-EE-A3JD-06 12 4919217 4919217 G A KCNA6 Missense_Mutation p.E4K 0.14 tolerated_low_confidence(0.67) benign(0) TCGA-EE-A3JD-06 12 4920507 4920507 G A KCNA6 Missense_Mutation p.G434R 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 12 5021123 5021123 G A KCNA1 Silent p.K193K 0.10 TCGA-EE-A3JD-06 12 50232487 50232487 G A BCDIN3D Silent p.F182F 0.09 TCGA-EE-A3JD-06 12 50344791 50344791 G A AQP2 Missense_Mutation p.G60S 0.08 tolerated(0.07) probably_damaging(0.988) TCGA-EE-A3JD-06 12 50392941 50392941 C T RACGAP1 Missense_Mutation p.D288N 0.15 tolerated(0.36) benign(0.011) TCGA-EE-A3JD-06 12 5153930 5153930 G A KCNA5 Missense_Mutation p.G206E 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3JD-06 12 51733669 51733669 C T CELA1 Missense_Mutation p.G195E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 51752041 51752041 G A GALNT6 Missense_Mutation p.S458F 0.13 deleterious(0.01) benign(0.429) TCGA-EE-A3JD-06 12 52200593 52200593 G A SCN8A Missense_Mutation p.E1775K 0.08 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 12 52282005 52282005 C T ANKRD33 Missense_Mutation p.S12F 0.08 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-EE-A3JD-06 12 52312854 52312854 G A ACVRL1 Silent p.V444V 0.06 TCGA-EE-A3JD-06 12 52699473 52699473 C T KRT86 Silent p.I309I 0.05 TCGA-EE-A3JD-06 12 52710730 52710730 C T KRT83 Missense_Mutation p.M276I 0.09 deleterious(0.02) benign(0.098) TCGA-EE-A3JD-06 12 52713040 52713040 C T KRT83 Missense_Mutation p.E165K 0.10 tolerated(0.29) benign(0.087) TCGA-EE-A3JD-06 12 52797502 52797502 C T KRT82 Silent p.L201L 0.10 TCGA-EE-A3JD-06 12 52882264 52882264 C T KRT6A Silent p.K424K 0.06 TCGA-EE-A3JD-06 12 52883755 52883755 C T KRT6A Missense_Mutation p.R392K 0.10 tolerated(0.05) benign(0.402) TCGA-EE-A3JD-06 12 52886525 52886525 G A KRT6A Silent p.L150L 0.09 TCGA-EE-A3JD-06 12 52946910 52946910 C T KRT71 5'UTR 0.15 TCGA-EE-A3JD-06 12 52992707 52992707 C T KRT72 Missense_Mutation p.D206N 0.05 deleterious(0.02) possibly_damaging(0.805) TCGA-EE-A3JD-06 12 52992771 52992771 C T KRT72 Silent p.Q184Q 0.05 TCGA-EE-A3JD-06 12 53008368 53008368 C T KRT73 Missense_Mutation p.E272K 0.07 deleterious(0) benign(0.318) TCGA-EE-A3JD-06 12 53011862 53011862 C T KRT73 Silent p.K149K 0.07 TCGA-EE-A3JD-06 12 53044219 53044219 C T KRT2 Missense_Mutation p.S235N 0.06 tolerated(1) benign(0.023) TCGA-EE-A3JD-06 12 53165697 53165697 C T KRT76 Missense_Mutation p.M407I 0.06 tolerated(0.06) possibly_damaging(0.688) TCGA-EE-A3JD-06 12 53185151 53185151 C T KRT3 Silent p.K458K 0.08 TCGA-EE-A3JD-06 12 53185177 53185177 C T KRT3 Missense_Mutation p.E450K 0.07 deleterious(0.01) possibly_damaging(0.692) TCGA-EE-A3JD-06 12 53186064 53186064 G A KRT3 Nonsense_Mutation p.Q383* 0.14 TCGA-EE-A3JD-06 12 53431199 53431199 G A EIF4B Missense_Mutation p.R438Q 0.19 deleterious(0.04) benign(0.18) TCGA-EE-A3JD-06 12 53865470 53865470 C T PCBP2 Missense_Mutation p.R315C 0.11 deleterious(0) benign(0.02) TCGA-EE-A3JD-06 12 54798243 54798243 G A ITGA5 Silent p.S478S 0.11 TCGA-EE-A3JD-06 12 54971181 54971181 C T PPP1R1A 3'Flank 0.10 TCGA-EE-A3JD-06 12 55356583 55356583 C T TESPA1 Missense_Mutation p.E367K 0.09 tolerated_low_confidence(0.09) benign(0.018) TCGA-EE-A3JD-06 12 55523681 55523681 G A OR9K2 Silent p.R43R 0.08 TCGA-EE-A3JD-06 12 55714957 55714957 T C OR6C1 Missense_Mutation p.F192L 0.09 tolerated_low_confidence(0.76) benign(0.075) TCGA-EE-A3JD-06 12 55715217 55715217 A G OR6C1 Silent p.S278S 0.06 TCGA-EE-A3JD-06 12 55794908 55794908 T A OR6C65 Nonsense_Mutation p.L199* 0.07 TCGA-EE-A3JD-06 12 55846399 55846399 G A OR6C2 Missense_Mutation p.M134I 0.10 deleterious_low_confidence(0.05) benign(0.398) TCGA-EE-A3JD-06 12 55846720 55846720 C T OR6C2 Silent p.S241S 0.13 TCGA-EE-A3JD-06 12 55846840 55846840 C T OR6C2 Silent p.P281P 0.12 TCGA-EE-A3JD-06 12 56030722 56030722 G A OR10P1 Missense_Mutation p.G16E 0.08 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JD-06 12 56115531 56115531 G A RDH5 Nonsense_Mutation p.W123* 0.07 TCGA-EE-A3JD-06 12 56815553 56815553 A G TIMELESS Silent p.L895L 0.08 TCGA-EE-A3JD-06 12 57423538 57423538 G A MYO1A Missense_Mutation p.R904C 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 12 57591086 57591086 G A LRP1 Silent p.E3027E 0.06 TCGA-EE-A3JD-06 12 57865355 57865355 A C GLI1 Silent p.P944P 0.16 TCGA-EE-A3JD-06 12 6085342 6085342 C T VWF Missense_Mutation p.D2458N 0.09 deleterious(0) probably_damaging(0.945) TCGA-EE-A3JD-06 12 6204541 6204541 G A VWF Intron 0.14 TCGA-EE-A3JD-06 12 62148676 62148676 C T FAM19A2 Missense_Mutation p.R79Q 0.11 tolerated(0.07) possibly_damaging(0.746) TCGA-EE-A3JD-06 12 62902275 62902275 C T MON2 Intron 0.10 TCGA-EE-A3JD-06 12 6443401 6443401 C T TNFRSF1A Missense_Mutation p.E17K 0.08 deleterious(0.04) benign(0.034) TCGA-EE-A3JD-06 12 6443402 6443402 C T TNFRSF1A Silent p.L16L 0.08 TCGA-EE-A3JD-06 12 65722340 65722340 C T MSRB3 Missense_Mutation p.P81S 0.10 tolerated(0.2) benign(0.025) TCGA-EE-A3JD-06 12 6753577 6753577 C G ACRBP Missense_Mutation p.E224Q 0.15 tolerated(0.26) probably_damaging(0.999) TCGA-EE-A3JD-06 12 6760488 6760488 A G ING4 Splice_Site p.X237_splice 0.14 TCGA-EE-A3JD-06 12 6837404 6837404 T G COPS7A Missense_Mutation p.L85R 0.10 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JD-06 12 6883975 6883975 C T LAG3 Silent p.I242I 0.12 TCGA-EE-A3JD-06 12 6960146 6960146 G A CDCA3 5'UTR 0.20 TCGA-EE-A3JD-06 12 69656203 69656203 G A CPSF6 Missense_Mutation p.R507Q 0.16 deleterious(0.04) unknown(0) TCGA-EE-A3JD-06 12 6972453 6972453 C T USP5 Silent p.V622V 0.09 TCGA-EE-A3JD-06 12 70949651 70949651 G A PTPRB Silent p.D1664D 0.17 TCGA-EE-A3JD-06 12 71526584 71526584 G A TSPAN8 Silent p.V155V 0.07 TCGA-EE-A3JD-06 12 72050905 72050905 C T ZFC3H1 Missense_Mutation p.E259K 0.12 tolerated(0.11) benign(0.02) TCGA-EE-A3JD-06 12 72083432 72083432 C T TMEM19 Silent p.I64I 0.07 TCGA-EE-A3JD-06 12 7252524 7252524 C T C1RL Missense_Mutation p.E197K 0.15 deleterious(0.03) benign(0.021) TCGA-EE-A3JD-06 12 7276770 7276770 C T RBP5 Missense_Mutation p.E119K 0.08 deleterious(0.01) benign(0.243) TCGA-EE-A3JD-06 12 72771862 72771862 G A TRHDE Missense_Mutation p.E381K 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-EE-A3JD-06 12 7522042 7522042 C T CD163L1 Missense_Mutation p.G1317E 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 12 7528303 7528303 G A CD163L1 Silent p.V893V 0.07 TCGA-EE-A3JD-06 12 7636081 7636081 C T CD163 Silent p.P990P 0.09 TCGA-EE-A3JD-06 12 7647890 7647890 C T CD163 Missense_Mutation p.G403R 0.10 tolerated(0.1) benign(0.236) TCGA-EE-A3JD-06 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.11 tolerated(0.06) possibly_damaging(0.542) TCGA-EE-A3JD-06 12 7981301 7981301 C T SLC2A14 Silent p.R248R 0.09 TCGA-EE-A3JD-06 12 81102690 81102690 C T MYF6 Missense_Mutation p.S227F 0.10 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JD-06 12 81102693 81102693 C T MYF6 Missense_Mutation p.S228L 0.11 tolerated(0.34) probably_damaging(0.953) TCGA-EE-A3JD-06 12 81111188 81111188 C T MYF5 Nonsense_Mutation p.Q116* 0.06 TCGA-EE-A3JD-06 12 81112695 81112695 G A MYF5 Silent p.V211V 0.08 TCGA-EE-A3JD-06 12 81741536 81741536 C T PPFIA2 Missense_Mutation p.E670K 0.10 deleterious(0) possibly_damaging(0.652) TCGA-EE-A3JD-06 12 85680754 85680754 C T ALX1 Missense_Mutation p.P219S 0.06 tolerated(0.68) benign(0.001) TCGA-EE-A3JD-06 12 88472945 88472945 A T CEP290 Missense_Mutation p.I1763N 0.17 probably_damaging(0.929) TCGA-EE-A3JD-06 12 91347381 91347381 C T CCER1 Missense_Mutation p.S380N 0.07 tolerated(1) unknown(0) TCGA-EE-A3JD-06 12 91348265 91348265 C T CCER1 Nonsense_Mutation p.W85* 0.09 TCGA-EE-A3JD-06 12 9348939 9348939 G A PZP Missense_Mutation p.P360L 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 12 95500733 95500733 C T FGD6 Missense_Mutation p.M1138I 0.10 deleterious(0.01) benign(0.394) TCGA-EE-A3JD-06 12 96272009 96272009 C A CCDC38 Nonsense_Mutation p.E420* 0.14 TCGA-EE-A3JD-06 12 97043781 97043781 G A C12orf55 Silent p.K1601K 0.06 TCGA-EE-A3JD-06 12 97045402 97045402 C T C12orf55 Nonsense_Mutation p.Q1637* 0.07 TCGA-EE-A3JD-06 13 100617672 100617672 C T ZIC5 Missense_Mutation p.E651K 0.07 deleterious(0.01) possibly_damaging(0.696) TCGA-EE-A3JD-06 13 101759870 101759870 A G NALCN Silent p.F849F 0.10 TCGA-EE-A3JD-06 13 101833451 101833451 G A NALCN Intron 0.06 TCGA-EE-A3JD-06 13 103718593 103718593 C T SLC10A2 Missense_Mutation p.D3N 0.08 tolerated_low_confidence(1) benign(0) TCGA-EE-A3JD-06 13 108518262 108518262 G A FAM155A Missense_Mutation p.S228F 0.06 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 13 111082947 111082947 G A COL4A2 Missense_Mutation p.G214E 0.12 probably_damaging(1) TCGA-EE-A3JD-06 13 111274599 111274599 C T CARKD Missense_Mutation p.S46L 0.16 tolerated(0.15) benign(0.032) TCGA-EE-A3JD-06 13 113803313 113803313 G A F10 Missense_Mutation p.E317K 0.08 tolerated(0.39) benign(0.016) TCGA-EE-A3JD-06 13 114321934 114321934 C T GRK1 Missense_Mutation p.S78L 0.12 deleterious(0.01) benign(0.059) TCGA-EE-A3JD-06 13 19751273 19751273 C T TUBA3C Missense_Mutation p.E284K 0.08 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EE-A3JD-06 13 23808758 23808758 G A SGCG Missense_Mutation p.M68I 0.07 deleterious(0.05) benign(0.12) TCGA-EE-A3JD-06 13 23914626 23914626 G A SACS Missense_Mutation p.T1130I 0.13 probably_damaging(0.996) TCGA-EE-A3JD-06 13 24167504 24167504 A T TNFRSF19 Missense_Mutation p.E30D 0.07 deleterious(0.05) probably_damaging(0.925) TCGA-EE-A3JD-06 13 25000604 25000604 C T PARP4 Missense_Mutation p.R1660K 0.12 deleterious(0.05) benign(0.152) TCGA-EE-A3JD-06 13 25338387 25338387 C T RNF17 Nonsense_Mutation p.Q16* 0.13 TCGA-EE-A3JD-06 13 26789091 26789091 G A RNF6 Nonsense_Mutation p.R310* 0.11 TCGA-EE-A3JD-06 13 28543051 28543051 G A CDX2 Silent p.F31F 0.14 TCGA-EE-A3JD-06 13 28611406 28611406 G A FLT3 Missense_Mutation p.H409Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 13 28623828 28623828 G A FLT3 Missense_Mutation p.H276Y 0.14 tolerated(0.67) benign(0.021) TCGA-EE-A3JD-06 13 28885851 28885851 G A FLT1 Missense_Mutation p.P1171S 0.07 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JD-06 13 33628294 33628294 G A KL Missense_Mutation p.E404K 0.11 deleterious(0.03) probably_damaging(0.984) TCGA-EE-A3JD-06 13 33629411 33629411 C T KL Missense_Mutation p.P520S 0.08 tolerated(0.07) possibly_damaging(0.764) TCGA-EE-A3JD-06 13 36026303 36026303 G A NBEA Missense_Mutation p.E2127K 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A3JD-06 13 42763274 42763274 G A DGKH Missense_Mutation p.E581K 0.08 tolerated(0.09) benign(0.171) TCGA-EE-A3JD-06 13 45554049 45554049 C T NUFIP1 Silent p.K211K 0.08 TCGA-EE-A3JD-06 13 53307360 53307360 G A LECT1 Silent p.F116F 0.07 TCGA-EE-A3JD-06 13 53419612 53419612 G A PCDH8 Silent p.S929S 0.10 TCGA-EE-A3JD-06 13 60240893 60240893 A G DIAPH3 Missense_Mutation p.L1136P 0.12 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EE-A3JD-06 13 61985637 61985637 T G PCDH20 Silent p.I865I 0.08 TCGA-EE-A3JD-06 13 76417031 76417031 C T LMO7 Missense_Mutation p.S1126L 0.08 deleterious(0.01) possibly_damaging(0.501) TCGA-EE-A3JD-06 13 77636804 77636804 A G MYCBP2 Missense_Mutation p.V4196A 0.06 probably_damaging(0.949) TCGA-EE-A3JD-06 13 77862314 77862314 G A MYCBP2 Silent p.P154P 0.07 TCGA-EE-A3JD-06 13 79911419 79911419 G A RBM26 Missense_Mutation p.L824F 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 13 84454500 84454500 G A SLITRK1 Silent p.F381F 0.10 TCGA-EE-A3JD-06 13 86369306 86369306 G A SLITRK6 Silent p.A446A 0.08 TCGA-EE-A3JD-06 13 92408619 92408619 G A GPC5 Missense_Mutation p.E409K 0.09 deleterious(0.02) possibly_damaging(0.752) TCGA-EE-A3JD-06 13 93879659 93879659 G A GPC6 5'UTR 0.11 TCGA-EE-A3JD-06 13 96237103 96237103 C T DZIP1 Missense_Mutation p.G804E 0.09 tolerated(0.52) benign(0.007) TCGA-EE-A3JD-06 13 96546844 96546844 C T UGGT2 Missense_Mutation p.D943N 0.08 tolerated(0.16) benign(0.03) TCGA-EE-A3JD-06 13 97639498 97639498 G A OXGR1 Silent p.I172I 0.10 TCGA-EE-A3JD-06 13 99505667 99505667 G A DOCK9 Missense_Mutation p.S1314F 0.08 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JD-06 14 101350809 101350809 G A RTL1 Missense_Mutation p.S106L 0.14 tolerated_low_confidence(0.1) benign(0.005) TCGA-EE-A3JD-06 14 101449280 101449280 C T SNORD114-22 RNA 0.09 TCGA-EE-A3JD-06 14 101459645 101459645 C T SNORD114-31 RNA 0.20 TCGA-EE-A3JD-06 14 101490179 101490179 G A MIR299 RNA 0.21 TCGA-EE-A3JD-06 14 101515886 101515886 G A MIR381HG Intron 0.09 TCGA-EE-A3JD-06 14 101531976 101531976 C T MIR369 RNA 0.10 TCGA-EE-A3JD-06 14 104641648 104641648 C T KIF26A Silent p.F841F 0.12 TCGA-EE-A3JD-06 14 105241278 105241278 G A AKT1 Silent p.L210L 0.07 TCGA-EE-A3JD-06 14 105410406 105410406 C T AHNAK2 Silent p.K3794K 0.14 TCGA-EE-A3JD-06 14 105420374 105420374 C T AHNAK2 Missense_Mutation p.E472K 0.14 benign(0.205) TCGA-EE-A3JD-06 14 105420634 105420634 C T AHNAK2 Missense_Mutation p.R385Q 0.12 benign(0.132) TCGA-EE-A3JD-06 14 106208432 106208432 G A IGHG1 Silent p.V156V 0.12 TCGA-EE-A3JD-06 14 106236651 106236651 G A IGHG3 Missense_Mutation p.P139S 0.14 tolerated(0.8) benign(0.005) TCGA-EE-A3JD-06 14 106405705 106405705 C T IGHV6-1 Missense_Mutation p.R90Q 0.17 deleterious(0.05) benign(0.285) TCGA-EE-A3JD-06 14 106667749 106667749 C T IGHV3-20 Silent p.G61G 0.09 TCGA-EE-A3JD-06 14 107049075 107049075 C T IGHV3-53 Missense_Mutation p.G16S 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.669) TCGA-EE-A3JD-06 14 107199217 107199217 C T IGHV3-72 Silent p.V24V 0.07 TCGA-EE-A3JD-06 14 20216060 20216060 C T OR4Q3 Silent p.I158I 0.10 TCGA-EE-A3JD-06 14 20216405 20216405 C T OR4Q3 Silent p.S273S 0.07 TCGA-EE-A3JD-06 14 20248730 20248730 A T OR4M1 Silent p.I83I 0.10 TCGA-EE-A3JD-06 14 20248759 20248759 C T OR4M1 Missense_Mutation p.S93F 0.09 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JD-06 14 20345316 20345316 C T OR4K2 Missense_Mutation p.A297V 0.11 deleterious(0.02) benign(0.082) TCGA-EE-A3JD-06 14 20388965 20388965 C T OR4K5 Missense_Mutation p.S67F 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 14 20404131 20404131 C T OR4K1 Silent p.F102F 0.09 TCGA-EE-A3JD-06 14 20612411 20612411 C T OR4N5 Nonsense_Mutation p.Q173* 0.11 TCGA-EE-A3JD-06 14 21162055 21162055 C T ANG Missense_Mutation p.S111F 0.09 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JD-06 14 21490309 21490309 C T NDRG2 Missense_Mutation p.E86K 0.09 tolerated(0.06) benign(0.077) TCGA-EE-A3JD-06 14 21793142 21793142 G A RPGRIP1 Missense_Mutation p.E710K 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 14 21993543 21993543 G A SALL2 Missense_Mutation p.P107S 0.14 tolerated(0.15) benign(0.002) TCGA-EE-A3JD-06 14 22102846 22102846 G A OR10G2 Silent p.L51L 0.09 TCGA-EE-A3JD-06 14 22133558 22133558 G A OR4E2 Missense_Mutation p.E88K 0.07 tolerated(0.35) benign(0.003) TCGA-EE-A3JD-06 14 22180973 22180973 G A TRAV2 Missense_Mutation p.R82Q 0.07 tolerated(0.29) possibly_damaging(0.863) TCGA-EE-A3JD-06 14 22192421 22192421 C T TRAV3 Missense_Mutation p.L66F 0.12 deleterious(0) possibly_damaging(0.846) TCGA-EE-A3JD-06 14 22279906 22279906 C T TRAV9-1 Missense_Mutation p.P32L 0.17 tolerated(1) benign(0) TCGA-EE-A3JD-06 14 22293689 22293689 G A TRAV10 Silent p.T6T 0.05 TCGA-EE-A3JD-06 14 22309704 22309704 C T TRAV12-1 Missense_Mutation p.P29S 0.10 tolerated(0.07) possibly_damaging(0.612) TCGA-EE-A3JD-06 14 22475890 22475890 G A TRAV19 Missense_Mutation p.R8K 0.20 tolerated(1) benign(0.006) TCGA-EE-A3JD-06 14 22509263 22509263 C T TRAV20 Silent p.F67F 0.21 TCGA-EE-A3JD-06 14 22564685 22564685 G A TRDV1 Missense_Mutation p.E46K 0.10 deleterious(0.04) benign(0.397) TCGA-EE-A3JD-06 14 22636798 22636798 C T TRAV30 Missense_Mutation p.S84L 0.17 benign(0.023) TCGA-EE-A3JD-06 14 22671208 22671208 C T TRAV26-2 Silent p.I91I 0.16 TCGA-EE-A3JD-06 14 22959531 22959531 C T TRAJ48 Silent p.T18T 0.20 TCGA-EE-A3JD-06 14 23235881 23235881 G A OXA1L Missense_Mutation p.G51S 0.09 tolerated_low_confidence(0.61) benign(0.002) TCGA-EE-A3JD-06 14 23282371 23282371 C T SLC7A7 Silent p.G79G 0.08 TCGA-EE-A3JD-06 14 23313074 23313074 T C MMP14 Missense_Mutation p.F336L 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 14 23519086 23519086 G A CDH24 Missense_Mutation p.P515L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 14 23746302 23746302 A T HOMEZ Silent p.P45P 0.09 TCGA-EE-A3JD-06 14 23817754 23817754 C T SLC22A17 Missense_Mutation p.R218Q 0.15 deleterious(0.03) possibly_damaging(0.833) TCGA-EE-A3JD-06 14 23857013 23857013 G A MYH6 Silent p.S1493S 0.06 TCGA-EE-A3JD-06 14 23862722 23862722 C T MYH6 Silent p.K978K 0.07 TCGA-EE-A3JD-06 14 23863396 23863396 C T MYH6 Missense_Mutation p.E856K 0.05 tolerated(0.07) possibly_damaging(0.611) TCGA-EE-A3JD-06 14 23870066 23870066 A G MYH6 Missense_Mutation p.V421A 0.06 deleterious(0.01) benign(0.057) TCGA-EE-A3JD-06 14 23872633 23872633 C T MYH6 Silent p.V274V 0.06 TCGA-EE-A3JD-06 14 23893122 23893122 C T MYH7 Silent p.E972E 0.15 TCGA-EE-A3JD-06 14 24524794 24524794 G A LRRC16B Nonsense_Mutation p.W216* 0.11 TCGA-EE-A3JD-06 14 24905653 24905653 G A KHNYN Missense_Mutation p.R582Q 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 14 39716429 39716429 T C MIA2 Silent p.S217S 0.09 TCGA-EE-A3JD-06 14 45618069 45618069 A G FANCM Silent p.L263L 0.09 TCGA-EE-A3JD-06 14 50606768 50606768 C T SOS2 Missense_Mutation p.E893K 0.10 tolerated(0.63) benign(0.101) TCGA-EE-A3JD-06 14 53360117 53360117 G A FERMT2 Silent p.L140L 0.08 TCGA-EE-A3JD-06 14 59112896 59112896 C T DACT1 Missense_Mutation p.P519S 0.07 tolerated(0.17) benign(0.068) TCGA-EE-A3JD-06 14 60903661 60903661 G A C14orf39 Missense_Mutation p.P556S 0.10 tolerated(0.27) probably_damaging(0.932) TCGA-EE-A3JD-06 14 63174967 63174967 C T KCNH5 Silent p.Q742Q 0.12 TCGA-EE-A3JD-06 14 64692100 64692100 C T SYNE2 Silent p.P6860P 0.16 TCGA-EE-A3JD-06 14 65252542 65252542 G A SPTB Missense_Mutation p.S1230F 0.11 tolerated(0.92) benign(0.081) TCGA-EE-A3JD-06 14 65381176 65381176 G A CHURC1 Missense_Mutation p.R15Q 0.07 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-EE-A3JD-06 14 67390918 67390918 C T GPHN Missense_Mutation p.P246L 0.07 tolerated_low_confidence(0.4) benign(0) TCGA-EE-A3JD-06 14 67647729 67647729 G A GPHN 3'UTR 0.25 TCGA-EE-A3JD-06 14 68117675 68117675 C T VTI1B 3'UTR 0.13 TCGA-EE-A3JD-06 14 69256856 69256856 G A ZFP36L1 Silent p.F137F 0.10 TCGA-EE-A3JD-06 14 69520803 69520803 G A DCAF5 Missense_Mutation p.T867I 0.12 deleterious_low_confidence(0.01) benign(0) TCGA-EE-A3JD-06 14 69520804 69520804 T C DCAF5 Missense_Mutation p.T867A 0.10 tolerated_low_confidence(0.91) benign(0) TCGA-EE-A3JD-06 14 70633754 70633754 C T SLC8A3 Silent p.K462K 0.09 TCGA-EE-A3JD-06 14 70795947 70795947 G A COX16 Missense_Mutation p.P50S 0.16 deleterious(0.03) probably_damaging(0.992) TCGA-EE-A3JD-06 14 71206664 71206664 G A MAP3K9 Intron 0.14 TCGA-EE-A3JD-06 14 72055841 72055841 C T SIPA1L1 Missense_Mutation p.R418W 0.09 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JD-06 14 72921268 72921268 C T RGS6 Missense_Mutation p.L73F 0.10 tolerated(0.06) probably_damaging(0.927) TCGA-EE-A3JD-06 14 73719404 73719404 C T PAPLN Missense_Mutation p.P312S 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3JD-06 14 74824907 74824907 C T VRTN Missense_Mutation p.P474L 0.10 tolerated(0.08) benign(0.009) TCGA-EE-A3JD-06 14 74824910 74824910 G A VRTN Nonsense_Mutation p.W475* 0.08 TCGA-EE-A3JD-06 14 74874367 74874367 G A SYNDIG1L Silent p.F196F 0.08 TCGA-EE-A3JD-06 14 76429781 76429781 C T TGFB3 Silent p.K268K 0.10 TCGA-EE-A3JD-06 14 76906017 76906017 G A ESRRB Silent p.G107G 0.15 TCGA-EE-A3JD-06 14 77272821 77272821 A T ANGEL1 Missense_Mutation p.S440T 0.11 tolerated(0.31) possibly_damaging(0.842) TCGA-EE-A3JD-06 14 77294741 77294741 G A C14orf166B Missense_Mutation p.E66K 0.11 deleterious(0.01) probably_damaging(0.937) TCGA-EE-A3JD-06 14 77327087 77327087 G A C14orf166B Missense_Mutation p.V386I 0.08 tolerated(0.6) benign(0.002) TCGA-EE-A3JD-06 14 77333740 77333740 G A C14orf166B Silent p.V467V 0.15 TCGA-EE-A3JD-06 14 77732921 77732921 C T NGB Silent p.G138G 0.06 TCGA-EE-A3JD-06 14 78140264 78140264 G A ALKBH1 Missense_Mutation p.P354L 0.08 deleterious(0.04) benign(0.384) TCGA-EE-A3JD-06 14 81837505 81837505 C T STON2 Nonsense_Mutation p.W133* 0.13 TCGA-EE-A3JD-06 14 86087876 86087876 A C FLRT2 Silent p.T6T 0.21 TCGA-EE-A3JD-06 14 86088099 86088099 C T FLRT2 Missense_Mutation p.P81S 0.06 deleterious(0) possibly_damaging(0.864) TCGA-EE-A3JD-06 14 88477392 88477392 C T GPR65 Silent p.L67L 0.10 TCGA-EE-A3JD-06 14 89061315 89061315 C T ZC3H14 Intron 0.23 TCGA-EE-A3JD-06 14 92136247 92136247 G A CATSPERB Missense_Mutation p.P400S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 14 92251599 92251599 C T TC2N Missense_Mutation p.M423I 0.12 tolerated(0.06) benign(0.021) TCGA-EE-A3JD-06 14 94079155 94079155 C T UNC79 Missense_Mutation p.P1079L 0.07 deleterious(0.01) possibly_damaging(0.798) TCGA-EE-A3JD-06 14 94120311 94120311 C T UNC79 Silent p.A1936A 0.05 TCGA-EE-A3JD-06 14 94394920 94394920 G A FAM181A Missense_Mutation p.E159K 0.14 deleterious(0.02) benign(0.204) TCGA-EE-A3JD-06 14 94731788 94731788 C T PPP4R4 Silent p.P754P 0.09 TCGA-EE-A3JD-06 14 94756345 94756345 G A SERPINA10 Missense_Mutation p.R196C 0.10 deleterious(0.04) possibly_damaging(0.596) TCGA-EE-A3JD-06 14 94776174 94776174 C T SERPINA6 Silent p.G261G 0.05 TCGA-EE-A3JD-06 14 94912840 94912840 C T SERPINA11 Missense_Mutation p.E249K 0.08 tolerated(0.68) possibly_damaging(0.677) TCGA-EE-A3JD-06 14 94933591 94933591 C T SERPINA9 Missense_Mutation p.E271K 0.10 tolerated(0.34) benign(0.006) TCGA-EE-A3JD-06 14 94935574 94935574 G A SERPINA9 Silent p.L220L 0.14 TCGA-EE-A3JD-06 14 94935675 94935675 G A SERPINA9 Missense_Mutation p.P186L 0.13 tolerated(0.3) benign(0.004) TCGA-EE-A3JD-06 14 94953647 94953647 C T SERPINA12 Missense_Mutation p.G413E 0.12 tolerated(0.31) benign(0.032) TCGA-EE-A3JD-06 14 94964509 94964509 G A SERPINA12 Missense_Mutation p.P76S 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 14 95035923 95035923 G A SERPINA4 Silent p.T425T 0.12 TCGA-EE-A3JD-06 14 95057221 95057221 C T SERPINA5 Silent p.I342I 0.12 TCGA-EE-A3JD-06 14 95107122 95107122 G A SERPINA13P RNA 0.17 TCGA-EE-A3JD-06 14 95670765 95670765 G A CLMN Silent p.I307I 0.13 TCGA-EE-A3JD-06 14 96131410 96131410 G A TCL6 RNA 0.11 TCGA-EE-A3JD-06 14 96707656 96707656 G A BDKRB2 Missense_Mutation p.V331M 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A3JD-06 14 96731069 96731069 C T BDKRB1 Silent p.F350F 0.12 TCGA-EE-A3JD-06 14 99641494 99641494 G A BCL11B Missense_Mutation p.S560L 0.27 tolerated(0.2) benign(0.001) TCGA-EE-A3JD-06 14 99723871 99723871 C T BCL11B Missense_Mutation p.D122N 0.08 deleterious(0.01) benign(0.042) TCGA-EE-A3JD-06 15 100340198 100340198 C T DNM1P46 RNA 0.08 TCGA-EE-A3JD-06 15 101569171 101569171 C T LRRK1 Silent p.F899F 0.05 TCGA-EE-A3JD-06 15 22382562 22382562 G A OR4N4 Silent p.L30L 0.11 TCGA-EE-A3JD-06 15 23258338 23258338 G A GOLGA8I Missense_Mutation p.R82Q 0.12 tolerated(0.19) benign(0.004) TCGA-EE-A3JD-06 15 23261109 23261109 G A GOLGA8I Missense_Mutation p.E262K 0.09 tolerated(0.06) possibly_damaging(0.8) TCGA-EE-A3JD-06 15 25312939 25312939 C T SNORD116-7 RNA 0.09 TCGA-EE-A3JD-06 15 25324213 25324213 G A SNORD116-13 RNA 0.10 TCGA-EE-A3JD-06 15 26793217 26793217 G C GABRB3 Nonsense_Mutation p.S382* 0.05 TCGA-EE-A3JD-06 15 26806257 26806257 G A GABRB3 Missense_Mutation p.P301L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 15 28326952 28326952 G A OCA2 Silent p.S23S 0.09 TCGA-EE-A3JD-06 15 28377941 28377941 C T HERC2 Missense_Mutation p.R4089K 0.08 benign(0.006) TCGA-EE-A3JD-06 15 28377943 28377943 C A HERC2 Silent p.L4088L 0.08 TCGA-EE-A3JD-06 15 28412933 28412933 G A HERC2 Missense_Mutation p.T3485I 0.15 benign(0.298) TCGA-EE-A3JD-06 15 28465727 28465727 C A HERC2 Missense_Mutation p.V1906F 0.10 probably_damaging(0.977) TCGA-EE-A3JD-06 15 33954658 33954658 T A RYR3 Missense_Mutation p.F1643I 0.09 benign(0.119) TCGA-EE-A3JD-06 15 34102739 34102739 C T RYR3 Silent p.I3362I 0.09 TCGA-EE-A3JD-06 15 34396264 34396264 C T PGBD4 Missense_Mutation p.S511F 0.13 deleterious(0.03) possibly_damaging(0.447) TCGA-EE-A3JD-06 15 39885209 39885209 C T THBS1 Nonsense_Mutation p.R926* 0.10 TCGA-EE-A3JD-06 15 42280266 42280266 C T PLA2G4E Silent p.R604R 0.16 TCGA-EE-A3JD-06 15 42299962 42299962 C A PLA2G4E Nonsense_Mutation p.E120* 0.12 TCGA-EE-A3JD-06 15 42436648 42436648 C T PLA2G4F Missense_Mutation p.D659N 0.07 tolerated(0.11) benign(0.272) TCGA-EE-A3JD-06 15 43269030 43269030 C T UBR1 Nonsense_Mutation p.W1418* 0.19 TCGA-EE-A3JD-06 15 43552443 43552443 G A TGM5 Silent p.R81R 0.18 TCGA-EE-A3JD-06 15 44811453 44811453 C T CTDSPL2 Missense_Mutation p.T400I 0.14 deleterious(0.04) probably_damaging(0.934) TCGA-EE-A3JD-06 15 45402102 45402102 A G DUOX2 Missense_Mutation p.Y373H 0.10 deleterious(0) probably_damaging(0.977) TCGA-EE-A3JD-06 15 45433149 45433149 C T DUOX1 Silent p.L482L 0.07 TCGA-EE-A3JD-06 15 49030999 49030999 G A CEP152 Missense_Mutation p.S1527F 0.11 deleterious(0.01) benign(0.286) TCGA-EE-A3JD-06 15 50212466 50212466 C T ATP8B4 Missense_Mutation p.E634K 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 15 50279599 50279599 A C ATP8B4 Missense_Mutation p.V246G 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 15 50489752 50489752 C T SLC27A2 Silent p.S178S 0.09 TCGA-EE-A3JD-06 15 50555448 50555448 C T HDC Missense_Mutation p.R63Q 0.07 tolerated(0.13) benign(0.015) TCGA-EE-A3JD-06 15 51741366 51741366 G A DMXL2 Silent p.L2977L 0.11 TCGA-EE-A3JD-06 15 52521359 52521359 C T MYO5C Missense_Mutation p.E1060K 0.07 tolerated(0.11) benign(0.22) TCGA-EE-A3JD-06 15 54025313 54025313 C T WDR72 Missense_Mutation p.G12R 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 15 54847642 54847642 C T UNC13C Nonsense_Mutation p.R1964* 0.10 TCGA-EE-A3JD-06 15 54914522 54914522 C T UNC13C Intron 0.12 TCGA-EE-A3JD-06 15 54914588 54914588 G A UNC13C Missense_Mutation p.G2057E 0.07 deleterious_low_confidence(0.01) benign(0.172) TCGA-EE-A3JD-06 15 55742462 55742462 G A DYX1C1 Silent p.F247F 0.09 TCGA-EE-A3JD-06 15 55931947 55931947 G A PRTG Silent p.F739F 0.09 TCGA-EE-A3JD-06 15 57731226 57731226 G A CGNL1 Silent p.R343R 0.14 TCGA-EE-A3JD-06 15 57731246 57731246 T C CGNL1 Missense_Mutation p.I350T 0.18 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3JD-06 15 58471452 58471452 G A AQP9 Silent p.L207L 0.17 TCGA-EE-A3JD-06 15 60919658 60919658 G A RORA 5'UTR 0.19 TCGA-EE-A3JD-06 15 61521393 61521393 C T RORA Missense_Mutation p.D9N 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-EE-A3JD-06 15 63908028 63908028 G A HERC1 Missense_Mutation p.S4678F 0.10 probably_damaging(0.999) TCGA-EE-A3JD-06 15 63918323 63918323 G A HERC1 Missense_Mutation p.P4379L 0.13 probably_damaging(0.999) TCGA-EE-A3JD-06 15 63953993 63953993 G A HERC1 Silent p.Y3043Y 0.07 TCGA-EE-A3JD-06 15 65421405 65421405 A G PDCD7 Missense_Mutation p.L325S 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 15 65494255 65494255 C T CILP Missense_Mutation p.D381N 0.13 tolerated(0.07) benign(0.289) TCGA-EE-A3JD-06 15 65496858 65496858 C T CILP Missense_Mutation p.D223N 0.10 tolerated(0.47) probably_damaging(0.995) TCGA-EE-A3JD-06 15 65682496 65682496 G A IGDCC4 Missense_Mutation p.T802I 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A3JD-06 15 65918088 65918088 C T SLC24A1 Missense_Mutation p.P557L 0.12 probably_damaging(0.975) TCGA-EE-A3JD-06 15 67681173 67681173 C T IQCH Silent p.A487A 0.08 TCGA-EE-A3JD-06 15 67782384 67782384 G A IQCH Missense_Mutation p.R948K 0.08 deleterious(0.01) possibly_damaging(0.599) TCGA-EE-A3JD-06 15 69329397 69329397 C T NOX5 Silent p.L406L 0.08 TCGA-EE-A3JD-06 15 69329472 69329472 C T NOX5 Silent p.F431F 0.11 TCGA-EE-A3JD-06 15 71125132 71125132 C T LARP6 Silent p.R245R 0.08 TCGA-EE-A3JD-06 15 71953006 71953006 C T THSD4 Silent p.V430V 0.06 TCGA-EE-A3JD-06 15 72642869 72642869 G A HEXA Silent p.S265S 0.13 TCGA-EE-A3JD-06 15 72873292 72873292 C T ARIH1 Missense_Mutation p.A479V 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 15 73594990 73594990 C T NEO1 Missense_Mutation p.H1447Y 0.09 deleterious(0.01) possibly_damaging(0.861) TCGA-EE-A3JD-06 15 74468048 74468048 C T ISLR Silent p.P283P 0.07 TCGA-EE-A3JD-06 15 74473679 74473679 C T STRA6 Missense_Mutation p.M586I 0.08 tolerated(0.21) benign(0.381) TCGA-EE-A3JD-06 15 74625564 74625564 G A CCDC33 Intron 0.16 TCGA-EE-A3JD-06 15 74630285 74630285 C T CYP11A1 3'UTR 0.10 TCGA-EE-A3JD-06 15 78819766 78819766 C T HYKK Silent p.F174F 0.07 TCGA-EE-A3JD-06 15 79186450 79186450 T C MORF4L1 Missense_Mutation p.V266A 0.09 tolerated(0.12) possibly_damaging(0.617) TCGA-EE-A3JD-06 15 83781589 83781589 C T TM6SF1 Silent p.L45L 0.10 TCGA-EE-A3JD-06 15 84558914 84558914 C T ADAMTSL3 Missense_Mutation p.P376S 0.12 deleterious(0.04) benign(0.293) TCGA-EE-A3JD-06 15 84611435 84611435 G A ADAMTSL3 Silent p.E735E 0.12 TCGA-EE-A3JD-06 15 86124594 86124594 G A AKAP13 Missense_Mutation p.G1099S 0.10 tolerated_low_confidence(0.19) benign(0.004) TCGA-EE-A3JD-06 15 90152080 90152080 C T TICRR Silent p.S923S 0.10 TCGA-EE-A3JD-06 15 90167455 90167455 C T TICRR Missense_Mutation p.P1305L 0.07 deleterious(0.05) benign(0.013) TCGA-EE-A3JD-06 15 90167817 90167817 G A TICRR Missense_Mutation p.G1426R 0.07 tolerated(0.28) benign(0.003) TCGA-EE-A3JD-06 15 90280818 90280818 C T WDR93 Silent p.S541S 0.08 TCGA-EE-A3JD-06 15 91034584 91034584 C T IQGAP1 Missense_Mutation p.A1423V 0.14 tolerated(0.3) benign(0.165) TCGA-EE-A3JD-06 15 91083328 91083328 C T CRTC3 Missense_Mutation p.P64S 0.07 deleterious(0) probably_damaging(0.911) TCGA-EE-A3JD-06 15 93515639 93515639 C T CHD2 Missense_Mutation p.P833S 0.07 tolerated(0.25) benign(0.304) TCGA-EE-A3JD-06 15 94913385 94913385 G T MCTP2 Missense_Mutation p.D520Y 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3JD-06 15 99669977 99669977 C T SYNM Missense_Mutation p.S470L 0.12 deleterious(0) possibly_damaging(0.667) TCGA-EE-A3JD-06 15 99670258 99670258 G A SYNM Missense_Mutation p.D564N 0.10 deleterious(0.03) benign(0.102) TCGA-EE-A3JD-06 16 10032214 10032214 C T GRIN2A Silent p.V203V 0.07 TCGA-EE-A3JD-06 16 10788311 10788311 G A TEKT5 Silent p.N140N 0.08 TCGA-EE-A3JD-06 16 11001473 11001473 C T CIITA Silent p.F708F 0.10 TCGA-EE-A3JD-06 16 11361866 11361866 C T TNP2 Nonsense_Mutation p.W135* 0.08 TCGA-EE-A3JD-06 16 11370014 11370014 G A PRM2 Missense_Mutation p.R72C 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3JD-06 16 1144761 1144761 C T C1QTNF8 Silent p.R54R 0.13 TCGA-EE-A3JD-06 16 11782265 11782265 G A TXNDC11 Missense_Mutation p.P646L 0.07 tolerated(0.2) possibly_damaging(0.664) TCGA-EE-A3JD-06 16 16126992 16126992 C T ABCC1 Silent p.S214S 0.07 TCGA-EE-A3JD-06 16 16248637 16248637 G A ABCC6 Silent p.F1352F 0.11 TCGA-EE-A3JD-06 16 18532154 18532154 G A NOMO2 Missense_Mutation p.P736S 0.07 tolerated(0.21) possibly_damaging(0.576) TCGA-EE-A3JD-06 16 19051629 19051629 T C TMC7 Missense_Mutation p.F400L 0.12 tolerated(0.21) benign(0.016) TCGA-EE-A3JD-06 16 19451764 19451764 C T TMC5 Missense_Mutation p.P135L 0.08 tolerated_low_confidence(0.05) benign(0.023) TCGA-EE-A3JD-06 16 19490830 19490830 C T TMC5 Silent p.F749F 0.09 TCGA-EE-A3JD-06 16 20482531 20482531 G A ACSM2A Missense_Mutation p.D245N 0.12 tolerated(0.7) probably_damaging(1) TCGA-EE-A3JD-06 16 20486981 20486981 C T ACSM2A Silent p.F328F 0.07 TCGA-EE-A3JD-06 16 20551999 20551999 C T ACSM2B Missense_Mutation p.A536T 0.10 deleterious(0) probably_damaging(0.924) TCGA-EE-A3JD-06 16 20702343 20702343 C T ACSM1 Silent p.L56L 0.09 TCGA-EE-A3JD-06 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.11 tolerated(0.09) benign(0.052) TCGA-EE-A3JD-06 16 20975996 20975996 G A DNAH3 Silent p.I3070I 0.10 TCGA-EE-A3JD-06 16 20981309 20981309 C T DNAH3 Missense_Mutation p.E2755K 0.13 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JD-06 16 21221024 21221024 C T ZP2 Silent p.P86P 0.11 TCGA-EE-A3JD-06 16 22926337 22926337 G A HS3ST2 Silent p.E186E 0.09 TCGA-EE-A3JD-06 16 22926712 22926712 C T HS3ST2 Silent p.F311F 0.11 TCGA-EE-A3JD-06 16 23203735 23203735 G A SCNN1G Silent p.Q227Q 0.07 TCGA-EE-A3JD-06 16 23221108 23221108 G A SCNN1G Missense_Mutation p.C372Y 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 16 23224170 23224170 G A SCNN1G Nonsense_Mutation p.W462* 0.07 TCGA-EE-A3JD-06 16 23364134 23364134 C T SCNN1B Silent p.I108I 0.09 TCGA-EE-A3JD-06 16 23702165 23702165 G A ERN2 Missense_Mutation p.A971V 0.09 deleterious_low_confidence(0.05) benign(0.178) TCGA-EE-A3JD-06 16 24135197 24135197 G A PRKCB Silent p.K320K 0.10 TCGA-EE-A3JD-06 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.16 TCGA-EE-A3JD-06 16 24373066 24373066 G A CACNG3 Missense_Mutation p.G277E 0.06 deleterious(0.01) possibly_damaging(0.517) TCGA-EE-A3JD-06 16 24578672 24578672 C T RBBP6 Missense_Mutation p.P600S 0.07 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A3JD-06 16 24580302 24580302 G A RBBP6 Missense_Mutation p.R764K 0.09 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 16 24918042 24918042 G A SLC5A11 Silent p.S357S 0.11 TCGA-EE-A3JD-06 16 25264346 25264346 G A ZKSCAN2 Missense_Mutation p.P200L 0.07 tolerated(0.08) benign(0.001) TCGA-EE-A3JD-06 16 27448906 27448906 G A IL21R Missense_Mutation p.D84N 0.08 tolerated(0.05) benign(0.022) TCGA-EE-A3JD-06 16 2817437 2817437 C A SRRM2 Missense_Mutation p.P2303Q 0.10 probably_damaging(0.993) TCGA-EE-A3JD-06 16 30021292 30021292 C T DOC2A Silent p.S84S 0.07 TCGA-EE-A3JD-06 16 31092307 31092307 A C ZNF646 Silent p.T1554T 0.09 TCGA-EE-A3JD-06 16 31151930 31151930 C T PRSS36 Missense_Mutation p.E684K 0.16 tolerated(0.15) benign(0.186) TCGA-EE-A3JD-06 16 31336347 31336347 C T ITGAM Silent p.F787F 0.10 TCGA-EE-A3JD-06 16 31336837 31336837 G A ITGAM Missense_Mutation p.R842Q 0.06 tolerated(0.07) benign(0.064) TCGA-EE-A3JD-06 16 31471313 31471313 C T ARMC5 Silent p.L156L 0.07 TCGA-EE-A3JD-06 16 31539992 31539992 C T AHSP Missense_Mutation p.H97Y 0.12 tolerated(0.35) unknown(0) TCGA-EE-A3JD-06 16 3304435 3304435 C T MEFV Silent p.G211G 0.16 TCGA-EE-A3JD-06 16 3306472 3306472 C G MEFV Missense_Mutation p.R39T 0.06 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 16 3529541 3529541 G T NAA60 Missense_Mutation p.G61C 0.13 deleterious(0.02) possibly_damaging(0.841) TCGA-EE-A3JD-06 16 3604312 3604312 G A NLRC3 Missense_Mutation p.T780I 0.09 tolerated(0.48) benign(0.1) TCGA-EE-A3JD-06 16 3658452 3658452 G A SLX4 Missense_Mutation p.L172F 0.08 tolerated(0.71) benign(0) TCGA-EE-A3JD-06 16 3900298 3900298 C T CREBBP Silent p.K266K 0.12 TCGA-EE-A3JD-06 16 4407228 4407228 G A CORO7 Missense_Mutation p.R876W 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 16 48162624 48162624 G C ABCC12 Missense_Mutation p.P421A 0.06 tolerated(0.56) benign(0.032) TCGA-EE-A3JD-06 16 48177869 48177869 G A ABCC12 Missense_Mutation p.T76I 0.06 deleterious(0.01) benign(0.344) TCGA-EE-A3JD-06 16 4833743 4833743 G A SEPT12 Silent p.F179F 0.13 TCGA-EE-A3JD-06 16 50106595 50106595 C T HEATR3 Missense_Mutation p.P198S 0.09 tolerated(0.89) benign(0) TCGA-EE-A3JD-06 16 50707795 50707795 C T SNX20 Missense_Mutation p.R158Q 0.10 tolerated(0.12) benign(0.23) TCGA-EE-A3JD-06 16 50763788 50763788 G A NOD2 Missense_Mutation p.R1009K 0.10 tolerated(0.8) benign(0.001) TCGA-EE-A3JD-06 16 51174368 51174368 C T SALL1 Missense_Mutation p.G589S 0.10 tolerated(0.56) benign(0.004) TCGA-EE-A3JD-06 16 51174417 51174417 C T SALL1 Silent p.T572T 0.07 TCGA-EE-A3JD-06 16 51174734 51174734 G A SALL1 Missense_Mutation p.H467Y 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 16 51174860 51174860 G C SALL1 Missense_Mutation p.Q425E 0.09 deleterious(0.01) benign(0.084) TCGA-EE-A3JD-06 16 55530938 55530938 G A MMP2 Missense_Mutation p.E525K 0.07 deleterious(0.01) possibly_damaging(0.574) TCGA-EE-A3JD-06 16 55734085 55734085 C T SLC6A2 Missense_Mutation p.P542L 0.09 deleterious(0) possibly_damaging(0.862) TCGA-EE-A3JD-06 16 55855409 55855409 C T CES1 Silent p.G188G 0.09 TCGA-EE-A3JD-06 16 56867157 56867157 C T NUP93 Missense_Mutation p.P459L 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 16 56936405 56936405 G A SLC12A3 Silent p.T956T 0.07 TCGA-EE-A3JD-06 16 61687507 61687507 C T CDH8 3'UTR 0.09 TCGA-EE-A3JD-06 16 67323518 67323518 C T KCTD19 Missense_Mutation p.R912K 0.08 tolerated(0.41) benign(0.001) TCGA-EE-A3JD-06 16 67694180 67694180 C T ACD Missense_Mutation p.A68T 0.08 deleterious_low_confidence(0.01) benign(0.002) TCGA-EE-A3JD-06 16 68268011 68268011 C T ESRP2 Splice_Site p.X110_splice 0.16 TCGA-EE-A3JD-06 16 68856025 68856025 C T CDH1 Silent p.V611V 0.05 TCGA-EE-A3JD-06 16 68961601 68961601 C T TANGO6 Missense_Mutation p.A753V 0.08 deleterious(0) probably_damaging(0.911) TCGA-EE-A3JD-06 16 69693672 69693672 C T NFAT5 Silent p.V413V 0.12 TCGA-EE-A3JD-06 16 70599145 70599145 C T SF3B3 Nonsense_Mutation p.Q881* 0.13 TCGA-EE-A3JD-06 16 70841627 70841627 G A HYDIN Silent p.I5074I 0.12 TCGA-EE-A3JD-06 16 70889118 70889118 G A HYDIN Missense_Mutation p.S4119F 0.06 benign(0.071) TCGA-EE-A3JD-06 16 70995872 70995872 G A HYDIN Silent p.I1986I 0.10 TCGA-EE-A3JD-06 16 71008183 71008183 G A HYDIN Missense_Mutation p.R1644C 0.18 probably_damaging(0.988) TCGA-EE-A3JD-06 16 71127806 71127806 C T HYDIN Missense_Mutation p.G454R 0.13 probably_damaging(0.998) TCGA-EE-A3JD-06 16 71423774 71423774 G A CALB2 3'UTR 0.07 TCGA-EE-A3JD-06 16 71601983 71601983 G A TAT 3'UTR 0.10 TCGA-EE-A3JD-06 16 71663452 71663452 G A MARVELD3 Intron 0.09 TCGA-EE-A3JD-06 16 71663453 71663453 G A MARVELD3 Intron 0.09 TCGA-EE-A3JD-06 16 72057474 72057474 A T DHODH Missense_Mutation p.T359S 0.09 tolerated(0.11) benign(0.151) TCGA-EE-A3JD-06 16 72057476 72057476 C T DHODH Silent p.T359T 0.10 TCGA-EE-A3JD-06 16 72164190 72164190 C T PMFBP1 Silent p.K568K 0.08 TCGA-EE-A3JD-06 16 72829798 72829798 G A ZFHX3 Silent p.F2261F 0.09 TCGA-EE-A3JD-06 16 72830293 72830293 G A ZFHX3 Silent p.I2096I 0.09 TCGA-EE-A3JD-06 16 75203589 75203589 C T ZFP1 Missense_Mutation p.S194F 0.13 tolerated(0.7) possibly_damaging(0.485) TCGA-EE-A3JD-06 16 75563245 75563245 C T CHST5 Silent p.R346R 0.09 TCGA-EE-A3JD-06 16 77317850 77317850 A G ADAMTS18 3'UTR 0.12 TCGA-EE-A3JD-06 16 77389842 77389842 G A ADAMTS18 Silent p.F485F 0.09 TCGA-EE-A3JD-06 16 7759080 7759080 G A RBFOX1 Missense_Mutation p.D361N 0.06 deleterious(0) possibly_damaging(0.821) TCGA-EE-A3JD-06 16 78056613 78056613 G A CLEC3A Silent p.R39R 0.07 TCGA-EE-A3JD-06 16 78064472 78064472 G A CLEC3A Missense_Mutation p.E119K 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 16 80718715 80718715 G C CDYL2 Silent p.P112P 0.10 TCGA-EE-A3JD-06 16 81213265 81213265 G A PKD1L2 Nonsense_Mutation p.R64* 0.05 TCGA-EE-A3JD-06 16 81399011 81399011 G A GAN Missense_Mutation p.R477Q 0.09 deleterious(0) probably_damaging(0.932) TCGA-EE-A3JD-06 16 81941314 81941314 A G PLCG2 Missense_Mutation p.I498V 0.08 deleterious(0.04) benign(0.015) TCGA-EE-A3JD-06 16 81954867 81954867 C T PLCG2 Missense_Mutation p.P767L 0.08 deleterious(0) benign(0.408) TCGA-EE-A3JD-06 16 82034440 82034440 C T SDR42E1 Silent p.K8K 0.12 TCGA-EE-A3JD-06 16 83711990 83711990 G A CDH13 Missense_Mutation p.E535K 0.06 deleterious(0) possibly_damaging(0.876) TCGA-EE-A3JD-06 16 84014684 84014684 G A NECAB2 Silent p.L137L 0.06 TCGA-EE-A3JD-06 16 84213270 84213270 G A TAF1C Silent p.T629T 0.19 TCGA-EE-A3JD-06 16 8891501 8891501 C T TMEM186 5'UTR 0.16 TCGA-EE-A3JD-06 16 89831331 89831331 G A FANCA Silent p.T915T 0.09 TCGA-EE-A3JD-06 16 9857226 9857226 G A GRIN2A Missense_Mutation p.P1392L 0.12 tolerated(0.2) benign(0.015) TCGA-EE-A3JD-06 16 9857458 9857458 C T GRIN2A Missense_Mutation p.D1315N 0.06 deleterious(0) possibly_damaging(0.805) TCGA-EE-A3JD-06 16 9943663 9943663 G A GRIN2A Silent p.T426T 0.07 TCGA-EE-A3JD-06 17 10355638 10355638 C T MYH4 Missense_Mutation p.E1120K 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JD-06 17 10356177 10356177 C T MYH4 Missense_Mutation p.D1062N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 17 10356242 10356242 C T MYH4 Missense_Mutation p.G1040E 0.08 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 17 10366878 10366878 G A MYH4 Missense_Mutation p.S244F 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 17 10398343 10398343 C T MYH1 Missense_Mutation p.E1791K 0.12 deleterious(0) possibly_damaging(0.5) TCGA-EE-A3JD-06 17 10429115 10429115 C T MYH2 Silent p.K1422K 0.17 TCGA-EE-A3JD-06 17 11520840 11520840 C T DNAH9 Silent p.L339L 0.11 TCGA-EE-A3JD-06 17 11522871 11522871 A G DNAH9 Missense_Mutation p.N375D 0.06 benign(0.005) TCGA-EE-A3JD-06 17 11572837 11572837 C T DNAH9 Nonsense_Mutation p.Q1027* 0.09 TCGA-EE-A3JD-06 17 11597723 11597723 G A DNAH9 Missense_Mutation p.D1611N 0.09 probably_damaging(0.998) TCGA-EE-A3JD-06 17 12656186 12656186 G A MYOCD Silent p.V527V 0.23 TCGA-EE-A3JD-06 17 1519997 1519997 T C SLC43A2 Missense_Mutation p.N76S 0.09 tolerated(0.4) benign(0.042) TCGA-EE-A3JD-06 17 1538384 1538384 C T SCARF1 Missense_Mutation p.E721K 0.14 tolerated(0.11) benign(0.059) TCGA-EE-A3JD-06 17 15458665 15458665 T A TVP23C-CDRT4 Missense_Mutation p.D9V 0.13 deleterious(0) possibly_damaging(0.861) TCGA-EE-A3JD-06 17 1549852 1549852 G A RILP Missense_Mutation p.P364S 0.10 tolerated(0.2) benign(0.026) TCGA-EE-A3JD-06 17 1559773 1559773 G A PRPF8 Silent p.F1902F 0.08 TCGA-EE-A3JD-06 17 1562737 1562737 G A PRPF8 Silent p.F1684F 0.09 TCGA-EE-A3JD-06 17 17698376 17698376 C T RAI1 Missense_Mutation p.P705L 0.08 deleterious(0) benign(0.097) TCGA-EE-A3JD-06 17 17723577 17723577 G A SREBF1 Missense_Mutation p.S147F 0.07 deleterious(0) probably_damaging(0.931) TCGA-EE-A3JD-06 17 18138547 18138547 C T LLGL1 Missense_Mutation p.A402V 0.11 deleterious(0.01) benign(0.284) TCGA-EE-A3JD-06 17 19480770 19480770 G A SLC47A1 Silent p.R539R 0.05 TCGA-EE-A3JD-06 17 2203842 2203842 G A SMG6 Missense_Mutation p.P69S 0.07 tolerated_low_confidence(1) benign(0) TCGA-EE-A3JD-06 17 2203843 2203843 G A SMG6 Silent p.P68P 0.07 TCGA-EE-A3JD-06 17 2279163 2279163 C G SGSM2 Silent p.A826A 0.14 TCGA-EE-A3JD-06 17 2381128 2381128 T A METTL16 Silent p.L60L 0.12 TCGA-EE-A3JD-06 17 29162098 29162098 C T ATAD5 Silent p.P333P 0.08 TCGA-EE-A3JD-06 17 29562747 29562747 G A NF1 Missense_Mutation p.R1276Q 0.07 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JD-06 17 29654799 29654799 C T NF1 Missense_Mutation p.P1851S 0.13 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JD-06 17 31351016 31351016 C T ASIC2 Silent p.K404K 0.06 TCGA-EE-A3JD-06 17 3195499 3195499 G A OR3A1 Silent p.F126F 0.09 TCGA-EE-A3JD-06 17 33520640 33520640 C T SLC35G3 Silent p.V229V 0.07 TCGA-EE-A3JD-06 17 33520680 33520680 G A SLC35G3 Missense_Mutation p.P216L 0.08 tolerated(0.08) probably_damaging(0.917) TCGA-EE-A3JD-06 17 33690040 33690040 C T SLFN11 Missense_Mutation p.E263K 0.10 tolerated(0.13) benign(0.328) TCGA-EE-A3JD-06 17 33767741 33767741 C T SLFN13 Missense_Mutation p.R856Q 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3JD-06 17 33984729 33984729 C T AP2B1 Silent p.L636L 0.07 TCGA-EE-A3JD-06 17 3447899 3447899 C T TRPV3 Silent p.E95E 0.18 TCGA-EE-A3JD-06 17 34934591 34934591 C T GGNBP2 Missense_Mutation p.R274C 0.07 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 17 35295497 35295497 G A LHX1 Translation_Start_Site p.M1? 0.10 deleterious(0.02) benign(0.417) TCGA-EE-A3JD-06 17 36099564 36099564 C T HNF1B Silent p.R137R 0.10 TCGA-EE-A3JD-06 17 36288215 36288215 G A TBC1D3F Missense_Mutation p.G101R 0.05 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 17 36491997 36491997 C T GPR179 Missense_Mutation p.E420K 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 17 3665244 3665244 C T ITGAE Missense_Mutation p.G94R 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A3JD-06 17 37331556 37331556 G A CACNB1 Missense_Mutation p.R563W 0.06 deleterious_low_confidence(0.04) benign(0.446) TCGA-EE-A3JD-06 17 37331557 37331557 G A CACNB1 Silent p.N562N 0.06 TCGA-EE-A3JD-06 17 37371248 37371248 C T STAC2 Missense_Mutation p.G243E 0.09 tolerated(0.7) possibly_damaging(0.71) TCGA-EE-A3JD-06 17 37373332 37373332 C G STAC2 Missense_Mutation p.K164N 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-EE-A3JD-06 17 37681010 37681010 C T CDK12 Missense_Mutation p.P1060L 0.08 benign(0.015) TCGA-EE-A3JD-06 17 37842191 37842191 G A PGAP3 Missense_Mutation p.P88L 0.07 deleterious(0.05) probably_damaging(0.982) TCGA-EE-A3JD-06 17 37922608 37922608 G A IKZF3 Missense_Mutation p.P322L 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 17 3801117 3801117 C T P2RX1 Silent p.R397R 0.08 TCGA-EE-A3JD-06 17 38349236 38349236 G A RAPGEFL1 Silent p.E395E 0.09 TCGA-EE-A3JD-06 17 3846815 3846815 G A ATP2A3 Missense_Mutation p.A430V 0.10 tolerated(0.23) benign(0.034) TCGA-EE-A3JD-06 17 38633779 38633779 G A TNS4 3'UTR 0.19 TCGA-EE-A3JD-06 17 38644975 38644975 G A TNS4 Missense_Mutation p.P229L 0.14 tolerated(0.19) benign(0.025) TCGA-EE-A3JD-06 17 38933310 38933310 T A KRT27 Missense_Mutation p.T441S 0.09 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 17 39018824 39018824 G A KRT12 Silent p.S460S 0.08 TCGA-EE-A3JD-06 17 39032652 39032652 G A KRT20 Silent p.V412V 0.08 TCGA-EE-A3JD-06 17 39084769 39084769 C T KRT23 Missense_Mutation p.D243N 0.09 tolerated(0.19) probably_damaging(0.977) TCGA-EE-A3JD-06 17 39122943 39122943 C G KRT39 Missense_Mutation p.D56H 0.13 tolerated(0.55) benign(0.135) TCGA-EE-A3JD-06 17 39316469 39316469 G A KRTAP4-4 Missense_Mutation p.H159Y 0.09 unknown(0) TCGA-EE-A3JD-06 17 39316977 39316977 C T KRTAP4-4 5'UTR 0.11 TCGA-EE-A3JD-06 17 39340654 39340654 C T KRTAP4-1 3'UTR 0.09 TCGA-EE-A3JD-06 17 39340655 39340655 C T KRTAP4-1 3'UTR 0.09 TCGA-EE-A3JD-06 17 3937374 3937374 G A ZZEF1 Silent p.S2173S 0.11 TCGA-EE-A3JD-06 17 39471596 39471596 C T KRTAP17-1 Missense_Mutation p.D103N 0.10 unknown(0) TCGA-EE-A3JD-06 17 39537338 39537338 C T KRT34 Silent p.E228E 0.05 TCGA-EE-A3JD-06 17 39637282 39637282 C A KRT35 Missense_Mutation p.G23V 0.09 tolerated(0.08) benign(0.255) TCGA-EE-A3JD-06 17 39643906 39643906 G A KRT36 Silent p.I261I 0.08 TCGA-EE-A3JD-06 17 39672454 39672454 C T KRT15 Missense_Mutation p.G268S 0.07 tolerated(0.15) possibly_damaging(0.609) TCGA-EE-A3JD-06 17 39727707 39727707 C T KRT9 Missense_Mutation p.D180N 0.09 tolerated(0.08) benign(0.073) TCGA-EE-A3JD-06 17 39914696 39914696 G A JUP Silent p.N576N 0.11 TCGA-EE-A3JD-06 17 40094894 40094894 A G TTC25 RNA 0.05 TCGA-EE-A3JD-06 17 40107251 40107251 C T TTC25 RNA 0.11 TCGA-EE-A3JD-06 17 40133998 40133998 A G DNAJC7 Missense_Mutation p.V420A 0.11 tolerated(0.52) benign(0.016) TCGA-EE-A3JD-06 17 40652922 40652922 C T ATP6V0A1 Missense_Mutation p.S633L 0.09 tolerated(0.16) benign(0.016) TCGA-EE-A3JD-06 17 40673057 40673057 G C ATP6V0A1 Missense_Mutation p.Q812H 0.07 deleterious(0) probably_damaging(0.933) TCGA-EE-A3JD-06 17 40844653 40844653 C T CNTNAP1 Silent p.L889L 0.08 TCGA-EE-A3JD-06 17 4088262 4088262 G A ANKFY1 Missense_Mutation p.P559L 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JD-06 17 41002212 41002212 C T AOC2 Silent p.F706F 0.09 TCGA-EE-A3JD-06 17 41006556 41006556 G A AOC3 Silent p.V564V 0.08 TCGA-EE-A3JD-06 17 41931180 41931180 C T CD300LG Missense_Mutation p.P163S 0.11 tolerated(0.05) possibly_damaging(0.482) TCGA-EE-A3JD-06 17 42429828 42429828 C T GRN Silent p.S511S 0.08 TCGA-EE-A3JD-06 17 42476012 42476012 G A GPATCH8 Missense_Mutation p.L1145F 0.07 deleterious(0) unknown(0) TCGA-EE-A3JD-06 17 42476578 42476578 G A GPATCH8 Missense_Mutation p.S956F 0.10 deleterious(0.04) unknown(0) TCGA-EE-A3JD-06 17 42882774 42882774 G A GJC1 Missense_Mutation p.P138S 0.09 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JD-06 17 43181233 43181233 C T NMT1 Missense_Mutation p.L441F 0.08 tolerated(0.06) benign(0.401) TCGA-EE-A3JD-06 17 43898795 43898795 C T CRHR1 Missense_Mutation p.L106F 0.09 tolerated(0.06) benign(0.257) TCGA-EE-A3JD-06 17 43911182 43911182 C T CRHR1 Silent p.F373F 0.09 TCGA-EE-A3JD-06 17 43922587 43922587 G A SPPL2C Silent p.T105T 0.07 TCGA-EE-A3JD-06 17 4536740 4536740 C T ALOX15 Missense_Mutation p.G406E 0.07 tolerated(0.15) probably_damaging(0.918) TCGA-EE-A3JD-06 17 4539212 4539212 C T ALOX15 Missense_Mutation p.D335N 0.10 deleterious(0.01) possibly_damaging(0.557) TCGA-EE-A3JD-06 17 45888202 45888202 C T OSBPL7 Splice_Site p.X580_splice 0.08 TCGA-EE-A3JD-06 17 46136124 46136124 C T NFE2L1 Silent p.S480S 0.07 TCGA-EE-A3JD-06 17 46196496 46196496 C T SNX11 Nonsense_Mutation p.Q163* 0.07 TCGA-EE-A3JD-06 17 46474064 46474064 C T SKAP1 Missense_Mutation p.G44S 0.12 tolerated(0.47) benign(0.376) TCGA-EE-A3JD-06 17 46607085 46607085 C T HOXB1 Missense_Mutation p.E244K 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 17 47284190 47284190 C T GNGT2 Missense_Mutation p.D47N 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 17 47284743 47284743 C T GNGT2 Silent p.E14E 0.07 TCGA-EE-A3JD-06 17 4788845 4788845 C T MINK1 Silent p.P192P 0.10 TCGA-EE-A3JD-06 17 48266134 48266134 G A COL1A1 Missense_Mutation p.S1023F 0.08 unknown(0) TCGA-EE-A3JD-06 17 48680486 48680486 G A CACNA1G Missense_Mutation p.M1365I 0.08 tolerated(0.07) benign(0.256) TCGA-EE-A3JD-06 17 48694934 48694934 T C CACNA1G Splice_Site p.X1719_splice 0.11 TCGA-EE-A3JD-06 17 48701833 48701833 C T CACNA1G Silent p.I2114I 0.24 TCGA-EE-A3JD-06 17 48733226 48733226 G A ABCC3 Missense_Mutation p.D27N 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 17 48750426 48750426 C T ABCC3 Missense_Mutation p.S779F 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 17 48764954 48764954 C T ABCC3 Silent p.I1446I 0.15 TCGA-EE-A3JD-06 17 49353297 49353297 C T UTP18 Missense_Mutation p.P261L 0.09 deleterious(0) probably_damaging(0.974) TCGA-EE-A3JD-06 17 5045710 5045710 G A USP6 Missense_Mutation p.M577I 0.09 deleterious_low_confidence(0.01) benign(0.222) TCGA-EE-A3JD-06 17 5087336 5087336 G A ZNF594 Silent p.I72I 0.11 TCGA-EE-A3JD-06 17 51900709 51900709 C T KIF2B Silent p.A105A 0.08 TCGA-EE-A3JD-06 17 51901477 51901477 G A KIF2B Silent p.G361G 0.09 TCGA-EE-A3JD-06 17 56572419 56572419 G A MTMR4 Silent p.I1028I 0.08 TCGA-EE-A3JD-06 17 57094720 57094720 G A TRIM37 Nonsense_Mutation p.R775* 0.08 TCGA-EE-A3JD-06 17 57168659 57168659 A T TRIM37 Splice_Site p.X55_splice 0.09 TCGA-EE-A3JD-06 17 57168660 57168660 C T TRIM37 Splice_Site p.X55_splice 0.10 TCGA-EE-A3JD-06 17 58980029 58980029 C T BCAS3 Nonsense_Mutation p.Q263* 0.11 TCGA-EE-A3JD-06 17 59968924 59968924 G A INTS2 Nonsense_Mutation p.Q617* 0.07 TCGA-EE-A3JD-06 17 60345090 60345090 G A TBC1D3P2 RNA 0.06 TCGA-EE-A3JD-06 17 60744152 60744152 C T MRC2 Silent p.I298I 0.11 TCGA-EE-A3JD-06 17 61623070 61623070 C T KCNH6 Missense_Mutation p.P931L 0.09 tolerated_low_confidence(0.38) benign(0.001) TCGA-EE-A3JD-06 17 61685284 61685284 C T TACO1 Silent p.D272D 0.06 TCGA-EE-A3JD-06 17 61685285 61685285 C T TACO1 Silent p.L273L 0.06 TCGA-EE-A3JD-06 17 62043468 62043468 G A SCN4A Silent p.F412F 0.29 TCGA-EE-A3JD-06 17 62856628 62856628 C T LRRC37A3 Silent p.R1212R 0.14 TCGA-EE-A3JD-06 17 63206669 63206669 G A RGS9 Silent p.Q451Q 0.10 TCGA-EE-A3JD-06 17 6330369 6330369 G A AIPL1 Silent p.A158A 0.10 TCGA-EE-A3JD-06 17 6526936 6526936 G A KIAA0753 Intron 0.15 TCGA-EE-A3JD-06 17 6683756 6683756 G A FBXO39 Missense_Mutation p.R190K 0.08 tolerated(0.7) benign(0.002) TCGA-EE-A3JD-06 17 67188749 67188749 G A ABCA10 Missense_Mutation p.S609L 0.09 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JD-06 17 6927791 6927791 C T BCL6B Missense_Mutation p.P158L 0.09 deleterious(0) benign(0.221) TCGA-EE-A3JD-06 17 6942021 6942021 C T SLC16A13 Silent p.F298F 0.11 TCGA-EE-A3JD-06 17 7139346 7139346 G A PHF23 Silent p.S300S 0.10 TCGA-EE-A3JD-06 17 71433891 71433891 G A SDK2 Silent p.P329P 0.05 TCGA-EE-A3JD-06 17 7189140 7189140 G A SLC2A4 Silent p.Q413Q 0.08 TCGA-EE-A3JD-06 17 7222444 7222444 G A NEURL4 Silent p.F1203F 0.13 TCGA-EE-A3JD-06 17 72301464 72301464 G A DNAI2 Missense_Mutation p.G365D 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 17 72368006 72368006 G A GPR142 Missense_Mutation p.G219E 0.11 deleterious(0.04) probably_damaging(0.984) TCGA-EE-A3JD-06 17 72588716 72588716 G A C17orf77 Silent p.K177K 0.14 TCGA-EE-A3JD-06 17 72739297 72739297 C T RAB37 Silent p.F97F 0.08 TCGA-EE-A3JD-06 17 72926996 72926996 C T OTOP2 Silent p.I422I 0.08 TCGA-EE-A3JD-06 17 7350371 7350371 G A CHRNB1 Silent p.G121G 0.10 TCGA-EE-A3JD-06 17 73753508 73753508 C G ITGB4 Missense_Mutation p.L1781V 0.11 tolerated(0.16) benign(0.097) TCGA-EE-A3JD-06 17 73951939 73951939 G A ACOX1 Missense_Mutation p.R210C 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 17 74005881 74005881 G A EVPL Silent p.I1135I 0.12 TCGA-EE-A3JD-06 17 74006260 74006260 G A EVPL Missense_Mutation p.T1009I 0.10 tolerated(0.17) benign(0.138) TCGA-EE-A3JD-06 17 74007750 74007750 C T EVPL Splice_Site p.X857_splice 0.14 TCGA-EE-A3JD-06 17 74623609 74623609 G A ST6GALNAC1 Silent p.L296L 0.07 TCGA-EE-A3JD-06 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.08 TCGA-EE-A3JD-06 17 7604846 7604846 C T WRAP53 Silent p.S267S 0.08 TCGA-EE-A3JD-06 17 76437259 76437259 C T DNAH17 Missense_Mutation p.G3837S 0.07 probably_damaging(0.997) TCGA-EE-A3JD-06 17 7691234 7691234 C T DNAH2 Silent p.S2220S 0.10 TCGA-EE-A3JD-06 17 78337001 78337001 C T RNF213 Nonsense_Mutation p.Q3819* 0.06 TCGA-EE-A3JD-06 17 78931467 78931467 C T RPTOR Silent p.L1138L 0.11 TCGA-EE-A3JD-06 17 79225062 79225062 G A SLC38A10 Intron 0.10 TCGA-EE-A3JD-06 17 79536121 79536121 G A NPLOC4 Missense_Mutation p.P457L 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3JD-06 17 79650840 79650840 C T ARL16 Missense_Mutation p.G6R 0.14 deleterious_low_confidence(0) benign(0) TCGA-EE-A3JD-06 17 7984278 7984278 G A ALOX12B Missense_Mutation p.P151S 0.09 deleterious(0.01) possibly_damaging(0.662) TCGA-EE-A3JD-06 17 80049263 80049263 G A FASN Missense_Mutation p.R443W 0.34 deleterious(0) benign(0.248) TCGA-EE-A3JD-06 17 80213452 80213452 C T CSNK1D Silent p.V63V 0.07 TCGA-EE-A3JD-06 17 80543889 80543889 C T FOXK2 Silent p.S463S 0.11 TCGA-EE-A3JD-06 17 8416954 8416954 C T MYH10 Missense_Mutation p.E883K 0.08 possibly_damaging(0.793) TCGA-EE-A3JD-06 17 915214 915214 G A ABR Missense_Mutation p.S658F 0.08 deleterious(0.02) possibly_damaging(0.635) TCGA-EE-A3JD-06 17 9538775 9538775 G A WDR16 Silent p.K458K 0.08 TCGA-EE-A3JD-06 18 12963211 12963211 T C SEH1L Missense_Mutation p.F121S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 18 21330955 21330955 C T LAMA3 Missense_Mutation p.T253I 0.08 possibly_damaging(0.58) TCGA-EE-A3JD-06 18 21330956 21330956 C T LAMA3 Silent p.T253T 0.08 TCGA-EE-A3JD-06 18 21390383 21390383 G A LAMA3 Missense_Mutation p.G553R 0.08 probably_damaging(1) TCGA-EE-A3JD-06 18 21519301 21519301 C T LAMA3 Missense_Mutation p.P2993S 0.06 possibly_damaging(0.562) TCGA-EE-A3JD-06 18 28576904 28576904 C T DSC3 Missense_Mutation p.M782I 0.08 deleterious(0.04) benign(0.003) TCGA-EE-A3JD-06 18 28711825 28711825 G A DSC1 Intron 0.12 TCGA-EE-A3JD-06 18 28728487 28728487 A T DSC1 Missense_Mutation p.F249Y 0.10 deleterious(0.04) benign(0.198) TCGA-EE-A3JD-06 18 28913665 28913665 C T DSG1 Silent p.I266I 0.09 TCGA-EE-A3JD-06 18 2891505 2891505 G A EMILIN2 Silent p.T460T 0.13 TCGA-EE-A3JD-06 18 28935272 28935272 G A DSG1 Missense_Mutation p.R1038Q 0.07 deleterious(0) possibly_damaging(0.602) TCGA-EE-A3JD-06 18 28991248 28991248 G A DSG4 Missense_Mutation p.G750E 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 18 29040878 29040878 A G DSG3 Missense_Mutation p.K256R 0.13 deleterious(0.02) benign(0.271) TCGA-EE-A3JD-06 18 29054212 29054212 G A DSG3 Missense_Mutation p.G744R 0.10 deleterious(0) benign(0.104) TCGA-EE-A3JD-06 18 29339949 29339949 C T SLC25A52 Missense_Mutation p.G236R 0.08 deleterious(0) possibly_damaging(0.771) TCGA-EE-A3JD-06 18 30926343 30926343 C T CCDC178 Missense_Mutation p.E164K 0.07 deleterious(0.01) possibly_damaging(0.502) TCGA-EE-A3JD-06 18 31312028 31312028 G A ASXL3 Missense_Mutation p.G326R 0.07 probably_damaging(1) TCGA-EE-A3JD-06 18 31319920 31319920 C T ASXL3 Missense_Mutation p.S851L 0.18 benign(0.004) TCGA-EE-A3JD-06 18 31325667 31325667 C T ASXL3 Missense_Mutation p.S1952F 0.09 benign(0.429) TCGA-EE-A3JD-06 18 43469811 43469811 G A EPG5 Missense_Mutation p.P1635L 0.09 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JD-06 18 44559927 44559927 C T TCEB3B Missense_Mutation p.R570K 0.16 deleterious(0.03) benign(0.254) TCGA-EE-A3JD-06 18 44560508 44560508 G A TCEB3B Silent p.F376F 0.09 TCGA-EE-A3JD-06 18 44593483 44593483 C T KATNAL2 Missense_Mutation p.P201L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 18 45567101 45567101 G A ZBTB7C Silent p.I126I 0.13 TCGA-EE-A3JD-06 18 46383995 46383995 C T CTIF Missense_Mutation p.L524F 0.10 tolerated(0.19) probably_damaging(0.923) TCGA-EE-A3JD-06 18 47433000 47433000 C T MYO5B Missense_Mutation p.D735N 0.14 tolerated(0.09) benign(0.062) TCGA-EE-A3JD-06 18 47581688 47581688 C T MYO5B Missense_Mutation p.D30N 0.09 tolerated(0.06) benign(0.039) TCGA-EE-A3JD-06 18 48327822 48327822 G A MRO Missense_Mutation p.A175V 0.08 tolerated(0.13) possibly_damaging(0.454) TCGA-EE-A3JD-06 18 48333184 48333184 G A MRO Silent p.L60L 0.10 TCGA-EE-A3JD-06 18 51851172 51851172 C T STARD6 Missense_Mutation p.E185K 0.13 deleterious(0) probably_damaging(0.983) TCGA-EE-A3JD-06 18 51880872 51880872 C T STARD6 Nonsense_Mutation p.W24* 0.06 TCGA-EE-A3JD-06 18 52928755 52928755 C T TCF4 Missense_Mutation p.G413E 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A3JD-06 18 55024443 55024443 T C ST8SIA3 Missense_Mutation p.V201A 0.09 probably_damaging(0.998) TCGA-EE-A3JD-06 18 55024487 55024487 G A ST8SIA3 Missense_Mutation p.E216K 0.10 possibly_damaging(0.831) TCGA-EE-A3JD-06 18 55273872 55273872 C T NARS Silent p.G371G 0.08 TCGA-EE-A3JD-06 18 56171324 56171324 A C ALPK2 Missense_Mutation p.V2029G 0.10 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JD-06 18 56246452 56246452 C T ALPK2 Missense_Mutation p.R519K 0.07 tolerated(0.23) benign(0.045) TCGA-EE-A3JD-06 18 61225599 61225599 C G SERPINB12 Missense_Mutation p.N61K 0.14 deleterious(0.03) benign(0.133) TCGA-EE-A3JD-06 18 61306888 61306888 C T SERPINB4 Missense_Mutation p.E198K 0.11 tolerated(0.17) benign(0.072) TCGA-EE-A3JD-06 18 61306984 61306984 C T SERPINB4 Missense_Mutation p.G166R 0.10 deleterious(0.03) benign(0.027) TCGA-EE-A3JD-06 18 61449756 61449756 C T SERPINB7 Silent p.S50S 0.10 TCGA-EE-A3JD-06 18 61558673 61558673 G A SERPINB2 5'UTR 0.08 TCGA-EE-A3JD-06 18 61570518 61570518 C T SERPINB2 Silent p.F409F 0.09 TCGA-EE-A3JD-06 18 61582854 61582854 C A SERPINB10 Missense_Mutation p.T37N 0.12 deleterious(0.01) possibly_damaging(0.745) TCGA-EE-A3JD-06 18 61654189 61654189 C T SERPINB8 Missense_Mutation p.L268F 0.09 tolerated(0.05) possibly_damaging(0.572) TCGA-EE-A3JD-06 18 65178236 65178236 G A DSEL Missense_Mutation p.R1214C 0.11 deleterious(0.01) possibly_damaging(0.707) TCGA-EE-A3JD-06 18 66506047 66506047 G A CCDC102B Silent p.T237T 0.10 TCGA-EE-A3JD-06 18 67844040 67844040 G - RTTN Frame_Shift_Del p.M450Cfs*15 0.08 TCGA-EE-A3JD-06 18 6961660 6961660 C T LAMA1 Silent p.T2517T 0.12 TCGA-EE-A3JD-06 18 70502489 70502489 G A NETO1 Intron 0.16 TCGA-EE-A3JD-06 18 71740901 71740901 G A FBXO15 Missense_Mutation p.S443F 0.08 deleterious(0) possibly_damaging(0.907) TCGA-EE-A3JD-06 18 72178143 72178143 C T CNDP2 Silent p.F184F 0.07 TCGA-EE-A3JD-06 18 7231187 7231187 G A LRRC30 Silent p.R17R 0.09 TCGA-EE-A3JD-06 18 72343480 72343480 C T ZNF407 Missense_Mutation p.P169S 0.09 tolerated(0.12) benign(0.009) TCGA-EE-A3JD-06 18 72346310 72346310 C T ZNF407 Missense_Mutation p.S1112L 0.13 tolerated(0.48) benign(0.211) TCGA-EE-A3JD-06 18 77104307 77104307 C T ATP9B Nonsense_Mutation p.R809* 0.18 TCGA-EE-A3JD-06 18 77170834 77170834 T G NFATC1 Missense_Mutation p.S174A 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A3JD-06 18 77211023 77211023 C T NFATC1 Silent p.I540I 0.05 TCGA-EE-A3JD-06 18 9588787 9588787 G A PPP4R1 Silent p.N120N 0.08 TCGA-EE-A3JD-06 18 9887927 9887927 G A TXNDC2 Missense_Mutation p.R484K 0.10 tolerated(0.16) possibly_damaging(0.605) TCGA-EE-A3JD-06 19 10081680 10081680 T G COL5A3 Missense_Mutation p.K1285Q 0.07 unknown(0) TCGA-EE-A3JD-06 19 10220590 10220590 A T PPAN Missense_Mutation p.S198C 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 19 10248571 10248571 G A DNMT1 Silent p.S1410S 0.10 TCGA-EE-A3JD-06 19 10260313 10260313 T C DNMT1 Missense_Mutation p.D801G 0.10 deleterious(0) benign(0.106) TCGA-EE-A3JD-06 19 1057927 1057927 C T ABCA7 Missense_Mutation p.P1632S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 10753619 10753619 C T SLC44A2 Intron 0.12 TCGA-EE-A3JD-06 19 11287479 11287479 G A KANK2 Missense_Mutation p.S520F 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 19 11651946 11651946 G A CNN1 Missense_Mutation p.G40E 0.18 tolerated(1) benign(0.008) TCGA-EE-A3JD-06 19 11651947 11651947 G A CNN1 Silent p.G40G 0.19 TCGA-EE-A3JD-06 19 11832886 11832886 T C ZNF823 Missense_Mutation p.Q488R 0.06 tolerated(0.57) benign(0.022) TCGA-EE-A3JD-06 19 12576152 12576152 G A ZNF709 Missense_Mutation p.P195L 0.08 tolerated(0.06) probably_damaging(1) TCGA-EE-A3JD-06 19 12576270 12576270 G A ZNF709 Nonsense_Mutation p.R156* 0.09 TCGA-EE-A3JD-06 19 13368211 13368211 C T CACNA1A Missense_Mutation p.E1515K 0.10 possibly_damaging(0.801) TCGA-EE-A3JD-06 19 14046553 14046553 C T PODNL1 Missense_Mutation p.G166R 0.10 tolerated(0.07) possibly_damaging(0.607) TCGA-EE-A3JD-06 19 14991700 14991700 G A OR7A17 Silent p.S156S 0.09 TCGA-EE-A3JD-06 19 15053062 15053062 C T OR7C2 Silent p.G254G 0.07 TCGA-EE-A3JD-06 19 15061159 15061159 C T SLC1A6 Missense_Mutation p.G515R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 15164636 15164636 G A CASP14 Silent p.G90G 0.07 TCGA-EE-A3JD-06 19 15378342 15378342 T C BRD4 Silent p.L148L 0.07 TCGA-EE-A3JD-06 19 15562504 15562504 C T RASAL3 3'UTR 0.22 TCGA-EE-A3JD-06 19 15769333 15769333 C T CYP4F3 Missense_Mutation p.H428Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 19 15784425 15784425 G A CYP4F12 Nonsense_Mutation p.W29* 0.10 TCGA-EE-A3JD-06 19 15794318 15794318 T A CYP4F12 Nonsense_Mutation p.Y221* 0.07 TCGA-EE-A3JD-06 19 15794359 15794359 G A CYP4F12 Missense_Mutation p.R235K 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3JD-06 19 15794487 15794487 C T CYP4F12 Missense_Mutation p.L278F 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3JD-06 19 15852311 15852311 C T OR10H3 Silent p.L37L 0.09 TCGA-EE-A3JD-06 19 16008252 16008252 C T CYP4F2 Missense_Mutation p.R57Q 0.09 tolerated(0.14) benign(0.013) TCGA-EE-A3JD-06 19 16860664 16860664 C T NWD1 Missense_Mutation p.A404V 0.08 tolerated(0.18) benign(0.085) TCGA-EE-A3JD-06 19 16884082 16884082 C T NWD1 Silent p.F852F 0.13 TCGA-EE-A3JD-06 19 17001280 17001280 G A F2RL3 Missense_Mutation p.D336N 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 19 17463082 17463082 G A PLVAP 3'UTR 0.08 TCGA-EE-A3JD-06 19 17463083 17463083 G A PLVAP 3'UTR 0.09 TCGA-EE-A3JD-06 19 17476201 17476201 C T PLVAP Missense_Mutation p.R358Q 0.07 tolerated(0.08) possibly_damaging(0.69) TCGA-EE-A3JD-06 19 17476507 17476507 T C PLVAP Missense_Mutation p.N256S 0.09 tolerated(1) benign(0.005) TCGA-EE-A3JD-06 19 1808281 1808281 G A ATP8B3 Silent p.N152N 0.08 TCGA-EE-A3JD-06 19 18192971 18192971 G A IL12RB1 Silent p.F76F 0.09 TCGA-EE-A3JD-06 19 18234053 18234053 C T MAST3 Silent p.L113L 0.08 TCGA-EE-A3JD-06 19 18234054 18234054 C A MAST3 Missense_Mutation p.H114N 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3JD-06 19 18547641 18547641 C T ISYNA1 Silent p.A154A 0.14 TCGA-EE-A3JD-06 19 18710616 18710616 G A CRLF1 Silent p.I52I 0.33 TCGA-EE-A3JD-06 19 18870933 18870933 C T CRTC1 Missense_Mutation p.P277S 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-EE-A3JD-06 19 19243266 19243266 G A TMEM161A Missense_Mutation p.S113L 0.11 deleterious(0) possibly_damaging(0.686) TCGA-EE-A3JD-06 19 19431801 19431801 C T MAU2 Missense_Mutation p.R45C 0.13 deleterious(0) probably_damaging(0.964) TCGA-EE-A3JD-06 19 19645922 19645922 G A YJEFN3 Missense_Mutation p.G133E 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 19656290 19656290 G A CILP2 Missense_Mutation p.R979Q 0.08 deleterious(0.01) benign(0.201) TCGA-EE-A3JD-06 19 20829176 20829176 G A ZNF626 Silent p.F13F 0.06 TCGA-EE-A3JD-06 19 2151282 2151282 G A AP3D1 Silent p.L18L 0.20 TCGA-EE-A3JD-06 19 21608515 21608515 C T ZNF493 3'UTR 0.12 TCGA-EE-A3JD-06 19 22940043 22940043 T A ZNF99 3'Flank 0.09 TCGA-EE-A3JD-06 19 22941776 22941776 G A ZNF99 Missense_Mutation p.P312L 0.11 deleterious(0.05) probably_damaging(0.953) TCGA-EE-A3JD-06 19 23836819 23836819 G A ZNF675 Missense_Mutation p.H306Y 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-EE-A3JD-06 19 24010315 24010315 G A RPSAP58 Missense_Mutation p.E118K 0.06 deleterious(0.05) benign(0.383) TCGA-EE-A3JD-06 19 2433865 2433865 G A LMNB2 Silent p.L481L 0.06 TCGA-EE-A3JD-06 19 2873536 2873536 G A ZNF556 Missense_Mutation p.E16K 0.11 deleterious(0) unknown(0) TCGA-EE-A3JD-06 19 2877696 2877696 G A ZNF556 Missense_Mutation p.R247H 0.12 deleterious(0.02) probably_damaging(0.962) TCGA-EE-A3JD-06 19 2936550 2936550 G A ZNF77 Nonsense_Mutation p.Q95* 0.14 TCGA-EE-A3JD-06 19 30936114 30936114 G A ZNF536 Missense_Mutation p.E549K 0.05 tolerated(0.06) benign(0.169) TCGA-EE-A3JD-06 19 31040114 31040114 C T ZNF536 Silent p.A1196A 0.08 TCGA-EE-A3JD-06 19 3151736 3151736 G A GNA15 Missense_Mutation p.E173K 0.05 tolerated(0.06) possibly_damaging(0.45) TCGA-EE-A3JD-06 19 34263294 34263294 G T CHST8 Missense_Mutation p.G201C 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 35250983 35250983 A G ZNF599 Silent p.D241D 0.10 TCGA-EE-A3JD-06 19 36168793 36168793 G A UPK1A Nonsense_Mutation p.W243* 0.07 TCGA-EE-A3JD-06 19 36357116 36357116 G A KIRREL2 Missense_Mutation p.E617K 0.07 tolerated(0.26) benign(0.005) TCGA-EE-A3JD-06 19 3641756 3641756 C T PIP5K1C Silent p.Q578Q 0.07 TCGA-EE-A3JD-06 19 36431570 36431570 T C LRFN3 Missense_Mutation p.S415P 0.05 tolerated(0.09) benign(0.411) TCGA-EE-A3JD-06 19 36940040 36940040 G A ZNF566 Missense_Mutation p.P367S 0.18 deleterious(0.02) probably_damaging(0.919) TCGA-EE-A3JD-06 19 37644219 37644219 G A ZNF585A Silent p.S139S 0.13 TCGA-EE-A3JD-06 19 37678109 37678109 G A ZNF585B Silent p.I110I 0.13 TCGA-EE-A3JD-06 19 38027945 38027945 C T ZNF793 Missense_Mutation p.L129F 0.10 tolerated(0.53) benign(0.312) TCGA-EE-A3JD-06 19 38743542 38743542 T G PPP1R14A Missense_Mutation p.K92Q 0.13 tolerated(0.17) probably_damaging(0.963) TCGA-EE-A3JD-06 19 39009955 39009955 T C RYR1 Missense_Mutation p.S3374P 0.12 benign(0) TCGA-EE-A3JD-06 19 39123099 39123099 G A EIF3K Silent p.L128L 0.05 TCGA-EE-A3JD-06 19 39691306 39691306 C T NCCRP1 Silent p.F246F 0.10 TCGA-EE-A3JD-06 19 39905798 39905798 G A PLEKHG2 Silent p.V92V 0.15 TCGA-EE-A3JD-06 19 40098078 40098078 C T LGALS13 3'UTR 0.36 TCGA-EE-A3JD-06 19 40368830 40368830 C T FCGBP Missense_Mutation p.R4173Q 0.09 benign(0.005) TCGA-EE-A3JD-06 19 40408083 40408083 G A FCGBP Silent p.S1546S 0.13 TCGA-EE-A3JD-06 19 40421187 40421187 G A FCGBP Missense_Mutation p.R912W 0.10 probably_damaging(1) TCGA-EE-A3JD-06 19 40421295 40421295 C T FCGBP Missense_Mutation p.D876N 0.36 probably_damaging(1) TCGA-EE-A3JD-06 19 40434009 40434009 G A FCGBP Missense_Mutation p.S87L 0.17 possibly_damaging(0.697) TCGA-EE-A3JD-06 19 41349794 41349794 G A CYP2A6 Silent p.S464S 0.14 TCGA-EE-A3JD-06 19 41594960 41594960 G A CYP2A13 Missense_Mutation p.E103K 0.10 tolerated(0.63) benign(0.011) TCGA-EE-A3JD-06 19 41622410 41622410 G A CYP2F1 Silent p.R74R 0.09 TCGA-EE-A3JD-06 19 42218945 42218945 G A CEACAM5 Silent p.K160K 0.04 TCGA-EE-A3JD-06 19 42753164 42753164 G A ERF Missense_Mutation p.S367F 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.485) TCGA-EE-A3JD-06 19 430694 430694 G A SHC2 Silent p.S388S 0.09 TCGA-EE-A3JD-06 19 43373095 43373095 C T PSG1 Silent p.E267E 0.08 TCGA-EE-A3JD-06 19 43411107 43411107 C T PSG6 Missense_Mutation p.E403K 0.13 tolerated(0.19) possibly_damaging(0.466) TCGA-EE-A3JD-06 19 43420351 43420351 G A PSG6 Missense_Mutation p.S118F 0.03 tolerated(0.35) benign(0.446) TCGA-EE-A3JD-06 19 43433763 43433763 C T PSG7 Nonsense_Mutation p.W180* 0.13 TCGA-EE-A3JD-06 19 43439598 43439598 C T PSG7 Missense_Mutation p.G130R 0.16 tolerated(0.53) benign(0.037) TCGA-EE-A3JD-06 19 43708106 43708106 G A PSG4 Missense_Mutation p.T121I 0.11 deleterious(0.03) probably_damaging(0.925) TCGA-EE-A3JD-06 19 43709736 43709736 C T PSG4 5'UTR 0.18 TCGA-EE-A3JD-06 19 44947046 44947046 G A ZNF229 5'UTR 0.21 TCGA-EE-A3JD-06 19 45448490 45448490 C T APOC4 Silent p.S104S 0.12 TCGA-EE-A3JD-06 19 46094974 46094974 C T GPR4 Missense_Mutation p.E51K 0.23 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 19 46202120 46202120 C T QPCTL Missense_Mutation p.P283L 0.13 tolerated(0.05) probably_damaging(0.966) TCGA-EE-A3JD-06 19 46307918 46307918 G A RSPH6A Silent p.P415P 0.15 TCGA-EE-A3JD-06 19 46307919 46307919 G A RSPH6A Missense_Mutation p.P415L 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 19 46815879 46815879 G A HIF3A Missense_Mutation p.E332K 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JD-06 19 47124666 47124666 C T PTGIR Silent p.G344G 0.13 TCGA-EE-A3JD-06 19 47422257 47422257 C T ARHGAP35 Nonsense_Mutation p.R109* 0.07 TCGA-EE-A3JD-06 19 47844845 47844845 C T C5AR2 Silent p.S263S 0.08 TCGA-EE-A3JD-06 19 47865836 47865836 C T DHX34 Silent p.G493G 0.18 TCGA-EE-A3JD-06 19 4817416 4817416 G A TICAM1 Missense_Mutation p.P325L 0.13 tolerated(0.62) benign(0.001) TCGA-EE-A3JD-06 19 48601485 48601485 T C PLA2G4C Missense_Mutation p.K170R 0.20 tolerated(0.19) benign(0.026) TCGA-EE-A3JD-06 19 48918289 48918289 G A GRIN2D Silent p.E527E 0.10 TCGA-EE-A3JD-06 19 49248969 49248969 G A IZUMO1 Missense_Mutation p.H50Y 0.07 deleterious(0.01) possibly_damaging(0.878) TCGA-EE-A3JD-06 19 49261190 49261190 C T FGF21 Missense_Mutation p.H115Y 0.07 tolerated(0.26) benign(0.01) TCGA-EE-A3JD-06 19 49318379 49318379 C T HSD17B14 Missense_Mutation p.R130Q 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-EE-A3JD-06 19 49633325 49633325 G T PPFIA3 Splice_Site p.X219_splice 0.12 TCGA-EE-A3JD-06 19 49973716 49973716 G C ALDH16A1 Missense_Mutation p.G801R 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 50492968 50492968 A G VRK3 Missense_Mutation p.Y342H 0.17 tolerated(0.06) probably_damaging(0.96) TCGA-EE-A3JD-06 19 51509906 51509906 C T KLK9 Missense_Mutation p.D92N 0.18 tolerated(0.13) benign(0.068) TCGA-EE-A3JD-06 19 51525783 51525783 G A KLK11 3'UTR 0.11 TCGA-EE-A3JD-06 19 51563860 51563860 A G KLK13 Silent p.S23S 0.07 TCGA-EE-A3JD-06 19 51631717 51631717 G A SIGLEC9 Missense_Mutation p.G385R 0.09 deleterious(0.04) possibly_damaging(0.517) TCGA-EE-A3JD-06 19 51631718 51631718 G A SIGLEC9 Missense_Mutation p.G385E 0.09 tolerated(0.14) probably_damaging(0.974) TCGA-EE-A3JD-06 19 51649195 51649195 C T SIGLEC7 Missense_Mutation p.P282S 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 52000608 52000608 G A SIGLEC12 Silent p.F499F 0.09 TCGA-EE-A3JD-06 19 52033046 52033046 C T SIGLEC6 Missense_Mutation p.G315E 0.10 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A3JD-06 19 52272349 52272349 C T FPR2 Silent p.I146I 0.11 TCGA-EE-A3JD-06 19 52785427 52785427 C T ZNF766 Missense_Mutation p.P28S 0.05 tolerated(0.11) probably_damaging(0.999) TCGA-EE-A3JD-06 19 53015056 53015056 G A ZNF578 Silent p.K474K 0.18 TCGA-EE-A3JD-06 19 53057081 53057081 C T ZNF808 Silent p.C304C 0.11 TCGA-EE-A3JD-06 19 53571299 53571299 G A ZNF160 3'UTR 0.09 TCGA-EE-A3JD-06 19 53793738 53793738 G A BIRC8 5'UTR 0.14 TCGA-EE-A3JD-06 19 54209529 54209529 G A MIR526A1 RNA 0.09 TCGA-EE-A3JD-06 19 54224369 54224369 A G MIR517B RNA 0.12 TCGA-EE-A3JD-06 19 54417818 54417818 G A CACNG7 Silent p.T87T 0.09 TCGA-EE-A3JD-06 19 54515271 54515271 G A CACNG6 Missense_Mutation p.S204N 0.18 tolerated(0.28) benign(0.016) TCGA-EE-A3JD-06 19 54600332 54600332 G A OSCAR Missense_Mutation p.L68F 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JD-06 19 54759173 54759173 C T LILRB5 Missense_Mutation p.D310N 0.14 deleterious(0) possibly_damaging(0.763) TCGA-EE-A3JD-06 19 54803035 54803035 G A LILRA3 Silent p.L214L 0.15 TCGA-EE-A3JD-06 19 54872707 54872707 C T LAIR1 Silent p.L60L 0.16 TCGA-EE-A3JD-06 19 55106763 55106763 C T LILRA1 Missense_Mutation p.P186L 0.07 deleterious(0.04) probably_damaging(0.954) TCGA-EE-A3JD-06 19 55106764 55106764 C T LILRA1 Silent p.P186P 0.07 TCGA-EE-A3JD-06 19 55175228 55175228 C T LILRB4 Silent p.P29P 0.09 TCGA-EE-A3JD-06 19 55179430 55179430 C T LILRB4 Missense_Mutation p.P436L 0.10 deleterious(0) benign(0.057) TCGA-EE-A3JD-06 19 55221394 55221394 G A AC098784.2 3'Flank 0.10 TCGA-EE-A3JD-06 19 55301616 55301616 G C CTB-61M7.1 RNA 0.16 TCGA-EE-A3JD-06 19 55340883 55340883 C A KIR3DL1 Silent p.L356L 0.10 TCGA-EE-A3JD-06 19 55377861 55377861 G A KIR3DL2 Missense_Mutation p.R381K 0.11 tolerated(0.05) benign(0.141) TCGA-EE-A3JD-06 19 55401049 55401049 G A FCAR Silent p.L228L 0.04 TCGA-EE-A3JD-06 19 55421396 55421396 G A NCR1 Missense_Mutation p.S218N 0.06 deleterious(0.01) possibly_damaging(0.689) TCGA-EE-A3JD-06 19 55423579 55423579 C T NCR1 Silent p.L242L 0.13 TCGA-EE-A3JD-06 19 55711726 55711726 C T PTPRH Missense_Mutation p.R433Q 0.11 benign(0.107) TCGA-EE-A3JD-06 19 55798596 55798596 C T BRSK1 Silent p.I82I 0.05 TCGA-EE-A3JD-06 19 56320319 56320319 G A NLRP11 Missense_Mutation p.R553W 0.12 deleterious(0.01) benign(0.232) TCGA-EE-A3JD-06 19 56530724 56530724 G A NLRP5 Missense_Mutation p.M194I 0.14 tolerated(0.45) benign(0) TCGA-EE-A3JD-06 19 56539700 56539700 C T NLRP5 Missense_Mutation p.R701C 0.14 tolerated(0.19) benign(0.006) TCGA-EE-A3JD-06 19 56549468 56549468 C T NLRP5 Missense_Mutation p.S898F 0.10 tolerated(0.5) benign(0.432) TCGA-EE-A3JD-06 19 56701903 56701903 C T ZSCAN5B Missense_Mutation p.A261T 0.09 tolerated(0.61) possibly_damaging(0.886) TCGA-EE-A3JD-06 19 56703300 56703300 C T ZSCAN5B Silent p.V169V 0.11 TCGA-EE-A3JD-06 19 5680510 5680510 C T C19orf70 5'UTR 0.09 TCGA-EE-A3JD-06 19 56953700 56953700 G A ZNF667 Missense_Mutation p.H222Y 0.10 deleterious(0) benign(0.419) TCGA-EE-A3JD-06 19 57088404 57088404 C T ZNF470 Missense_Mutation p.H203Y 0.14 deleterious(0.05) benign(0.038) TCGA-EE-A3JD-06 19 57176164 57176164 C T ZNF835 Missense_Mutation p.E135K 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 19 57325217 57325217 G A PEG3 Silent p.I1531I 0.07 TCGA-EE-A3JD-06 19 57325937 57325937 G A PEG3 Silent p.F1291F 0.14 TCGA-EE-A3JD-06 19 57910946 57910946 C T ZNF548 Missense_Mutation p.R443C 0.06 tolerated(0.12) probably_damaging(0.95) TCGA-EE-A3JD-06 19 58189891 58189891 G A ZSCAN4 Missense_Mutation p.G307E 0.06 tolerated(1) benign(0.013) TCGA-EE-A3JD-06 19 58198992 58198992 G A ZNF551 Missense_Mutation p.R450K 0.14 tolerated(0.12) benign(0.016) TCGA-EE-A3JD-06 19 58967013 58967013 C T ZNF324B Silent p.L234L 0.14 TCGA-EE-A3JD-06 19 6182822 6182822 A T ACSBG2 Missense_Mutation p.I323F 0.10 deleterious(0) probably_damaging(0.954) TCGA-EE-A3JD-06 19 6187317 6187317 G A ACSBG2 Missense_Mutation p.E522K 0.08 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JD-06 19 6307229 6307229 C T ACER1 Nonsense_Mutation p.W187* 0.09 TCGA-EE-A3JD-06 19 6467486 6467486 G A DENND1C 3'UTR 0.13 TCGA-EE-A3JD-06 19 652848 652848 C T RNF126 Missense_Mutation p.E38K 0.08 deleterious(0.02) benign(0.141) TCGA-EE-A3JD-06 19 6694441 6694441 C T C3 Splice_Site p.X1052_splice 0.09 TCGA-EE-A3JD-06 19 6714067 6714067 C T C3 Missense_Mutation p.E237K 0.10 tolerated(0.17) benign(0.028) TCGA-EE-A3JD-06 19 6916361 6916361 G A EMR1 Missense_Mutation p.E468K 0.06 tolerated(0.68) benign(0.008) TCGA-EE-A3JD-06 19 7531995 7531995 G A ARHGEF18 Silent p.L812L 0.07 TCGA-EE-A3JD-06 19 7571947 7571947 G A C19orf45 Missense_Mutation p.D405N 0.13 tolerated(0.08) possibly_damaging(0.714) TCGA-EE-A3JD-06 19 7621349 7621349 C T PNPLA6 Missense_Mutation p.S1045L 0.08 deleterious(0) probably_damaging(0.934) TCGA-EE-A3JD-06 19 8321833 8321833 G A CERS4 Missense_Mutation p.D205N 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 19 8367400 8367400 C T CD320 Missense_Mutation p.V266M 0.06 tolerated(0.08) benign(0.22) TCGA-EE-A3JD-06 19 8367401 8367401 C T CD320 Silent p.L265L 0.06 TCGA-EE-A3JD-06 19 8550627 8550627 C T HNRNPM Silent p.L439L 0.08 TCGA-EE-A3JD-06 19 8595250 8595250 C T MYO1F Splice_Site p.X720_splice 0.05 TCGA-EE-A3JD-06 19 8660665 8660665 G A ADAMTS10 Missense_Mutation p.S487L 0.04 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 19 8953433 8953433 C T MBD3L1 Missense_Mutation p.P27S 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 19 8976784 8976784 C T MUC16 Silent p.K14094K 0.10 TCGA-EE-A3JD-06 19 9018545 9018545 C T MUC16 Silent p.L12543L 0.08 TCGA-EE-A3JD-06 19 9045750 9045750 C T MUC16 Missense_Mutation p.G11961R 0.05 benign(0.007) TCGA-EE-A3JD-06 19 9049005 9049005 C T MUC16 Missense_Mutation p.G10876R 0.15 benign(0.016) TCGA-EE-A3JD-06 19 9049163 9049163 G A MUC16 Missense_Mutation p.S10823L 0.12 benign(0.402) TCGA-EE-A3JD-06 19 9060158 9060158 C T MUC16 Silent p.L9096L 0.09 TCGA-EE-A3JD-06 19 9060189 9060189 G A MUC16 Missense_Mutation p.P9086L 0.07 unknown(0) TCGA-EE-A3JD-06 19 9060859 9060859 T C MUC16 Missense_Mutation p.T8863A 0.06 unknown(0) TCGA-EE-A3JD-06 19 9064199 9064199 G A MUC16 Silent p.T7749T 0.12 TCGA-EE-A3JD-06 19 9065032 9065032 G A MUC16 Missense_Mutation p.H7472Y 0.09 unknown(0) TCGA-EE-A3JD-06 19 9065737 9065737 G A MUC16 Nonsense_Mutation p.Q7237* 0.06 TCGA-EE-A3JD-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.07 unknown(0) TCGA-EE-A3JD-06 19 9074058 9074058 G A MUC16 Missense_Mutation p.T4463I 0.07 unknown(0) TCGA-EE-A3JD-06 19 9074907 9074907 C T MUC16 Missense_Mutation p.G4180E 0.14 unknown(0) TCGA-EE-A3JD-06 19 9075542 9075542 G A MUC16 Silent p.I3968I 0.11 TCGA-EE-A3JD-06 19 9077304 9077304 G A MUC16 Missense_Mutation p.S3381L 0.06 unknown(0) TCGA-EE-A3JD-06 19 9085544 9085544 G A MUC16 Missense_Mutation p.P2091S 0.06 unknown(0) TCGA-EE-A3JD-06 19 9204120 9204120 C T OR1M1 Missense_Mutation p.S67F 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 19 9453161 9453161 G A ZNF559 Missense_Mutation p.R345Q 0.09 tolerated(0.11) possibly_damaging(0.705) TCGA-EE-A3JD-06 19 9922061 9922061 G A FBXL12 Silent p.F164F 0.10 TCGA-EE-A3JD-06 1 100327056 100327056 T A AGL Intron 0.19 TCGA-EE-A3JD-06 1 100366238 100366238 C T AGL Missense_Mutation p.P1137S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 102312545 102312545 G T OLFM3 Intron 0.08 TCGA-EE-A3JD-06 1 108226151 108226151 C T VAV3 Missense_Mutation p.R579Q 0.10 tolerated(0.42) benign(0.001) TCGA-EE-A3JD-06 1 109321928 109321928 C T STXBP3 Silent p.L235L 0.08 TCGA-EE-A3JD-06 1 109772077 109772077 T C SARS Silent p.I110I 0.10 TCGA-EE-A3JD-06 1 11008832 11008832 G A C1orf127 Missense_Mutation p.P454S 0.08 tolerated(0.27) probably_damaging(0.996) TCGA-EE-A3JD-06 1 110155531 110155531 C T GNAT2 5'UTR 0.14 TCGA-EE-A3JD-06 1 110163659 110163659 C T AMPD2 Silent p.L8L 0.15 TCGA-EE-A3JD-06 1 110280189 110280189 G C GSTM3 Missense_Mutation p.L157V 0.10 tolerated(0.11) benign(0.149) TCGA-EE-A3JD-06 1 110294354 110294354 C T EPS8L3 Silent p.R496R 0.13 TCGA-EE-A3JD-06 1 111435035 111435035 C T CD53 Silent p.F44F 0.12 TCGA-EE-A3JD-06 1 111826748 111826748 C T CHIAP2 RNA 0.13 TCGA-EE-A3JD-06 1 112319689 112319689 C T KCND3 Silent p.T575T 0.13 TCGA-EE-A3JD-06 1 113253678 113253678 G A PPM1J Silent p.I354I 0.13 TCGA-EE-A3JD-06 1 114280858 114280858 G A PHTF1 Missense_Mutation p.P69S 0.16 tolerated(0.07) probably_damaging(1) TCGA-EE-A3JD-06 1 114511151 114511151 C T HIPK1 Silent p.V884V 0.09 TCGA-EE-A3JD-06 1 115229433 115229433 G A AMPD1 Missense_Mutation p.S138L 0.13 tolerated(0.06) benign(0.001) TCGA-EE-A3JD-06 1 115489885 115489885 C T SYCP1 Missense_Mutation p.L756F 0.13 deleterious(0.05) benign(0.133) TCGA-EE-A3JD-06 1 115576090 115576090 G A TSHB Missense_Mutation p.C36Y 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 115576594 115576594 G A TSHB Missense_Mutation p.D55N 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 1 11576111 11576111 G A PTCHD2 Missense_Mutation p.E548K 0.12 tolerated(0.91) benign(0.016) TCGA-EE-A3JD-06 1 11589736 11589736 T G PTCHD2 Missense_Mutation p.S974R 0.12 tolerated_low_confidence(0.35) benign(0.008) TCGA-EE-A3JD-06 1 11589929 11589929 G A PTCHD2 Silent p.V1005V 0.11 TCGA-EE-A3JD-06 1 117303215 117303215 G A CD2 Missense_Mutation p.V192I 0.13 deleterious(0.03) benign(0.246) TCGA-EE-A3JD-06 1 117560945 117560945 C T CD101 Nonsense_Mutation p.R594* 0.12 TCGA-EE-A3JD-06 1 117561111 117561111 C T CD101 Missense_Mutation p.S649F 0.11 deleterious(0.04) benign(0.071) TCGA-EE-A3JD-06 1 117644132 117644132 C T TTF2 Missense_Mutation p.L1159F 0.05 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 1 118581976 118581976 C T SPAG17 Silent p.E1086E 0.14 TCGA-EE-A3JD-06 1 11897070 11897070 C T CLCN6 Silent p.L665L 0.09 TCGA-EE-A3JD-06 1 119427361 119427361 C T TBX15 Missense_Mutation p.M495I 0.09 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-EE-A3JD-06 1 120056793 120056793 G A HSD3B1 Missense_Mutation p.G216E 0.08 tolerated(0.23) benign(0.371) TCGA-EE-A3JD-06 1 120438559 120438559 C T ADAM30 Missense_Mutation p.R134Q 0.08 deleterious(0.05) possibly_damaging(0.598) TCGA-EE-A3JD-06 1 12337995 12337995 C T VPS13D Silent p.S1450S 0.11 TCGA-EE-A3JD-06 1 1250227 1250227 C T CPSF3L Missense_Mutation p.E233K 0.20 tolerated(0.4) possibly_damaging(0.651) TCGA-EE-A3JD-06 1 12785393 12785393 G A AADACL3 Silent p.Q161Q 0.16 TCGA-EE-A3JD-06 1 12785598 12785598 C T AADACL3 Missense_Mutation p.P230S 0.06 tolerated(0.79) benign(0.038) TCGA-EE-A3JD-06 1 12815748 12815748 G A C1orf158 Silent p.G70G 0.16 TCGA-EE-A3JD-06 1 12835722 12835722 G A PRAMEF12 Silent p.V108V 0.06 TCGA-EE-A3JD-06 1 12835800 12835800 G A PRAMEF12 Silent p.G134G 0.14 TCGA-EE-A3JD-06 1 12836053 12836053 C T PRAMEF12 Missense_Mutation p.L219F 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A3JD-06 1 12921491 12921491 G A PRAMEF2 Missense_Mutation p.E428K 0.07 tolerated(0.35) benign(0.04) TCGA-EE-A3JD-06 1 12943108 12943108 T C PRAMEF4 Silent p.E36E 0.10 TCGA-EE-A3JD-06 1 12979775 12979775 G A PRAMEF7 Missense_Mutation p.E323K 0.06 possibly_damaging(0.501) TCGA-EE-A3JD-06 1 13001260 13001260 C T PRAMEF6 Missense_Mutation p.M141I 0.05 tolerated(0.46) benign(0.017) TCGA-EE-A3JD-06 1 1322811 1322811 G A CCNL2 Missense_Mutation p.P455S 0.09 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A3JD-06 1 1341167 1341167 G A MRPL20 Intron 0.16 TCGA-EE-A3JD-06 1 13717023 13717023 G A PRAMEF17 Nonsense_Mutation p.W170* 0.11 TCGA-EE-A3JD-06 1 145416641 145416641 G A HFE2 Missense_Mutation p.R329Q 0.15 tolerated(0.45) benign(0.184) TCGA-EE-A3JD-06 1 145535820 145535820 G A ITGA10 Missense_Mutation p.G670S 0.09 tolerated(0.07) benign(0.258) TCGA-EE-A3JD-06 1 146673043 146673043 G A FMO5 Missense_Mutation p.R292C 0.06 tolerated(0.31) benign(0.103) TCGA-EE-A3JD-06 1 147131150 147131150 G A ACP6 Missense_Mutation p.R162C 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 147380580 147380580 C T GJA8 Silent p.I166I 0.10 TCGA-EE-A3JD-06 1 147381247 147381247 G A GJA8 Missense_Mutation p.E389K 0.13 tolerated(0.54) probably_damaging(0.98) TCGA-EE-A3JD-06 1 150482158 150482158 C T ECM1 Missense_Mutation p.S48F 0.10 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-EE-A3JD-06 1 150795738 150795738 G A ARNT Silent p.S442S 0.16 TCGA-EE-A3JD-06 1 151773519 151773519 A G LINGO4 Silent p.I554I 0.12 TCGA-EE-A3JD-06 1 152059114 152059114 C T TCHHL1 Silent p.K348K 0.05 TCGA-EE-A3JD-06 1 152083119 152083119 C T TCHH Silent p.E858E 0.07 TCGA-EE-A3JD-06 1 152084023 152084023 C T TCHH Missense_Mutation p.R557K 0.05 unknown(0) TCGA-EE-A3JD-06 1 152276186 152276186 G A FLG Missense_Mutation p.R3726W 0.04 unknown(0) TCGA-EE-A3JD-06 1 152276615 152276615 C T FLG Missense_Mutation p.E3583K 0.14 unknown(0) TCGA-EE-A3JD-06 1 152276755 152276755 C T FLG Missense_Mutation p.G3536E 0.06 unknown(0) TCGA-EE-A3JD-06 1 152276763 152276763 C T FLG Silent p.R3533R 0.07 TCGA-EE-A3JD-06 1 152276920 152276920 C T FLG Missense_Mutation p.G3481E 0.07 unknown(0) TCGA-EE-A3JD-06 1 152277286 152277286 C T FLG Missense_Mutation p.G3359E 0.04 unknown(0) TCGA-EE-A3JD-06 1 152279836 152279836 C T FLG Missense_Mutation p.G2509E 0.08 probably_damaging(0.999) TCGA-EE-A3JD-06 1 152283337 152283337 G A FLG Missense_Mutation p.A1342V 0.11 possibly_damaging(0.483) TCGA-EE-A3JD-06 1 152283540 152283540 A C FLG Missense_Mutation p.S1274R 0.10 possibly_damaging(0.637) TCGA-EE-A3JD-06 1 152283541 152283541 C T FLG Missense_Mutation p.S1274N 0.10 possibly_damaging(0.517) TCGA-EE-A3JD-06 1 152325417 152325417 C T FLG2 Silent p.E1615E 0.05 TCGA-EE-A3JD-06 1 153085178 153085178 G A SPRR2F Missense_Mutation p.P11L 0.05 unknown(0) TCGA-EE-A3JD-06 1 153177244 153177244 C T LELP1 Missense_Mutation p.P21S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-EE-A3JD-06 1 153905201 153905201 G A DENND4B Missense_Mutation p.P1226S 0.09 tolerated(0.17) probably_damaging(0.996) TCGA-EE-A3JD-06 1 153963238 153963238 C T RPS27 5'UTR 0.07 TCGA-EE-A3JD-06 1 154931799 154931799 G A PYGO2 Missense_Mutation p.P226L 0.10 deleterious(0.05) possibly_damaging(0.908) TCGA-EE-A3JD-06 1 154996433 154996433 C T DCST2 Missense_Mutation p.C582Y 0.10 tolerated(0.38) benign(0.003) TCGA-EE-A3JD-06 1 155162036 155162036 C T MUC1 Missense_Mutation p.G33R 0.09 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EE-A3JD-06 1 155230417 155230417 G A SCAMP3 Missense_Mutation p.P60S 0.08 tolerated(0.58) benign(0.027) TCGA-EE-A3JD-06 1 155263259 155263259 G A PKLR Silent p.F413F 0.09 TCGA-EE-A3JD-06 1 155327536 155327536 A C ASH1L Missense_Mutation p.L2267R 0.15 tolerated_low_confidence(0.35) probably_damaging(0.96) TCGA-EE-A3JD-06 1 1560431 1560431 G A MIB2 Missense_Mutation p.R311Q 0.14 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JD-06 1 156261254 156261254 G T TMEM79 Silent p.L350L 0.10 TCGA-EE-A3JD-06 1 156261256 156261256 C T TMEM79 Missense_Mutation p.S351L 0.10 deleterious(0.01) benign(0.077) TCGA-EE-A3JD-06 1 156642784 156642784 G A NES Missense_Mutation p.P399L 0.07 deleterious(0.02) benign(0.007) TCGA-EE-A3JD-06 1 157103991 157103991 T C ETV3 Missense_Mutation p.K105E 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 157490932 157490932 G A FCRL5 Missense_Mutation p.S797L 0.11 tolerated(0.09) possibly_damaging(0.532) TCGA-EE-A3JD-06 1 157667094 157667094 G A FCRL3 Missense_Mutation p.S227F 0.07 tolerated(0.09) possibly_damaging(0.861) TCGA-EE-A3JD-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.06 deleterious(0.05) benign(0.049) TCGA-EE-A3JD-06 1 158262068 158262068 G A CD1C Missense_Mutation p.E175K 0.08 tolerated(0.14) benign(0.041) TCGA-EE-A3JD-06 1 158262554 158262554 G A CD1C Missense_Mutation p.G260E 0.09 tolerated(0.17) possibly_damaging(0.742) TCGA-EE-A3JD-06 1 158297924 158297924 C T CD1B 3'UTR 0.18 TCGA-EE-A3JD-06 1 158323802 158323802 C T CD1E Silent p.F8F 0.13 TCGA-EE-A3JD-06 1 158324309 158324309 G A CD1E Nonsense_Mutation p.W67* 0.07 TCGA-EE-A3JD-06 1 158435655 158435655 T C OR10K1 Missense_Mutation p.F102L 0.06 deleterious(0.01) benign(0.011) TCGA-EE-A3JD-06 1 158548961 158548961 C T OR10X1 Silent p.R243R 0.12 TCGA-EE-A3JD-06 1 158576414 158576414 C T OR10Z1 Silent p.F62F 0.07 TCGA-EE-A3JD-06 1 158590148 158590148 C T SPTA1 Missense_Mutation p.E2077K 0.09 deleterious(0) possibly_damaging(0.489) TCGA-EE-A3JD-06 1 158618311 158618311 G A SPTA1 Silent p.P1234P 0.08 TCGA-EE-A3JD-06 1 15888703 15888703 C T DNAJC16 Silent p.S407S 0.09 TCGA-EE-A3JD-06 1 15905399 15905399 C T AGMAT Silent p.R225R 0.07 TCGA-EE-A3JD-06 1 159410164 159410164 G A OR10J1 Missense_Mutation p.E206K 0.12 deleterious(0.01) benign(0.304) TCGA-EE-A3JD-06 1 160124859 160124859 G A ATP1A4 Missense_Mutation p.E78K 0.09 tolerated(0.14) benign(0.002) TCGA-EE-A3JD-06 1 160128845 160128845 G A ATP1A4 Silent p.V193V 0.09 TCGA-EE-A3JD-06 1 160261862 160261862 G A COPA Silent p.F1038F 0.09 TCGA-EE-A3JD-06 1 16068980 16068980 G A TMEM82 5'UTR 0.25 TCGA-EE-A3JD-06 1 160793296 160793296 G A LY9 Missense_Mutation p.G514R 0.08 tolerated(0.49) benign(0) TCGA-EE-A3JD-06 1 161953594 161953594 G A OLFML2B Silent p.I708I 0.10 TCGA-EE-A3JD-06 1 16237594 16237594 A G SPEN Splice_Site p.X348_splice 0.12 TCGA-EE-A3JD-06 1 162824896 162824896 C T C1orf110 Missense_Mutation p.E190K 0.05 tolerated(0.23) probably_damaging(0.953) TCGA-EE-A3JD-06 1 16577850 16577850 G A FBXO42 Missense_Mutation p.P490L 0.13 deleterious_low_confidence(0.01) benign(0.36) TCGA-EE-A3JD-06 1 1663939 1663939 G A SLC35E2 Silent p.V252V 0.11 TCGA-EE-A3JD-06 1 166927045 166927045 C T ILDR2 Missense_Mutation p.G114R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 167023544 167023544 C T GPA33 3'UTR 0.12 TCGA-EE-A3JD-06 1 16725316 16725316 C T SPATA21 Missense_Mutation p.E452K 0.08 deleterious(0) probably_damaging(0.948) TCGA-EE-A3JD-06 1 16774457 16774457 G A NECAP2 Missense_Mutation p.E96K 0.15 tolerated(0.15) benign(0.038) TCGA-EE-A3JD-06 1 1688280 1688280 G A NADK Intron 0.18 TCGA-EE-A3JD-06 1 16907245 16907245 A T NBPF1 Missense_Mutation p.L529H 0.03 deleterious(0.04) probably_damaging(0.987) TCGA-EE-A3JD-06 1 16914225 16914225 G A NBPF1 Silent p.A187A 0.04 TCGA-EE-A3JD-06 1 171076846 171076846 G A FMO3 Missense_Mutation p.D118N 0.10 deleterious(0.04) benign(0.02) TCGA-EE-A3JD-06 1 171168519 171168519 C T FMO2 Silent p.S173S 0.15 TCGA-EE-A3JD-06 1 171761353 171761353 C T METTL13 Silent p.A557A 0.11 TCGA-EE-A3JD-06 1 1721867 1721867 G A GNB1 Silent p.F222F 0.08 TCGA-EE-A3JD-06 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.08 tolerated(1) benign(0.003) TCGA-EE-A3JD-06 1 17410329 17410329 C T PADI2 Missense_Mutation p.M314I 0.08 tolerated(0.38) benign(0.038) TCGA-EE-A3JD-06 1 175360500 175360500 C T TNR Silent p.G477G 0.16 TCGA-EE-A3JD-06 1 17559376 17559376 C T PADI1 Silent p.S408S 0.13 TCGA-EE-A3JD-06 1 17559377 17559377 T A PADI1 Missense_Mutation p.F409I 0.12 tolerated(0.21) probably_damaging(0.942) TCGA-EE-A3JD-06 1 176525476 176525476 C T PAPPA2 Silent p.I6I 0.08 TCGA-EE-A3JD-06 1 17660448 17660448 C T PADI4 Missense_Mutation p.S95L 0.12 deleterious(0.01) possibly_damaging(0.828) TCGA-EE-A3JD-06 1 176760607 176760607 G A PAPPA2 Missense_Mutation p.G1670E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 176762784 176762784 G A PAPPA2 Nonsense_Mutation p.W1703* 0.14 TCGA-EE-A3JD-06 1 177133560 177133560 C T ASTN1 Missense_Mutation p.E85K 0.18 deleterious_low_confidence(0.01) benign(0.121) TCGA-EE-A3JD-06 1 177249596 177249596 G A BRINP2 Silent p.G428G 0.07 TCGA-EE-A3JD-06 1 177250192 177250192 G A BRINP2 Nonsense_Mutation p.W627* 0.08 TCGA-EE-A3JD-06 1 178425883 178425883 C T RASAL2 Missense_Mutation p.P747S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 1 179520292 179520292 T A NPHS2 3'UTR 0.11 TCGA-EE-A3JD-06 1 179587780 179587780 G A TDRD5 Missense_Mutation p.G293E 0.08 deleterious(0.03) probably_damaging(0.911) TCGA-EE-A3JD-06 1 181741296 181741296 G A CACNA1E Missense_Mutation p.E1690K 0.05 tolerated(0.45) possibly_damaging(0.635) TCGA-EE-A3JD-06 1 184764950 184764950 C T FAM129A Missense_Mutation p.D650N 0.10 tolerated(0.3) benign(0.002) TCGA-EE-A3JD-06 1 18554486 18554486 G A IGSF21 Silent p.R55R 0.10 TCGA-EE-A3JD-06 1 18809741 18809741 C T KLHDC7A Missense_Mutation p.P756S 0.12 deleterious(0.01) unknown(0) TCGA-EE-A3JD-06 1 18809815 18809815 C T KLHDC7A 3'UTR 0.10 TCGA-EE-A3JD-06 1 18961634 18961634 G A PAX7 Silent p.K117K 0.11 TCGA-EE-A3JD-06 1 190250839 190250839 C T BRINP3 Missense_Mutation p.R93K 0.13 tolerated(0.25) benign(0.012) TCGA-EE-A3JD-06 1 19166701 19166701 G A TAS1R2 Missense_Mutation p.P638S 0.08 tolerated(0.62) benign(0.042) TCGA-EE-A3JD-06 1 19166764 19166764 C T TAS1R2 Missense_Mutation p.V617M 0.11 tolerated(0.13) benign(0.026) TCGA-EE-A3JD-06 1 192127853 192127853 G A RGS18 Missense_Mutation p.G29E 0.08 tolerated(0.73) benign(0.004) TCGA-EE-A3JD-06 1 196874238 196874238 G A CFHR4 Missense_Mutation p.R85K 0.17 tolerated(0.74) benign(0.102) TCGA-EE-A3JD-06 1 196964876 196964876 C T CFHR5 Nonsense_Mutation p.Q213* 0.15 TCGA-EE-A3JD-06 1 197032120 197032120 G A F13B Silent p.S44S 0.13 TCGA-EE-A3JD-06 1 197070718 197070718 T C ASPM Missense_Mutation p.K2555E 0.13 tolerated(0.52) benign(0.002) TCGA-EE-A3JD-06 1 197390814 197390814 G A CRB1 Missense_Mutation p.G619E 0.10 tolerated(0.14) benign(0.116) TCGA-EE-A3JD-06 1 200143254 200143254 A G NR5A2 Silent p.E514E 0.12 TCGA-EE-A3JD-06 1 200534574 200534574 G A KIF14 Silent p.N1295N 0.26 TCGA-EE-A3JD-06 1 200880585 200880585 G A C1orf106 Missense_Mutation p.D322N 0.08 tolerated(0.12) benign(0.411) TCGA-EE-A3JD-06 1 200969850 200969850 C T KIF21B Silent p.E487E 0.07 TCGA-EE-A3JD-06 1 201046067 201046067 G A CACNA1S Missense_Mutation p.A603V 0.06 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 1 201868853 201868853 C T LMOD1 Missense_Mutation p.G430R 0.07 probably_damaging(1) TCGA-EE-A3JD-06 1 20246838 20246838 G A PLA2G2E Missense_Mutation p.P131S 0.12 tolerated(0.14) benign(0.212) TCGA-EE-A3JD-06 1 202702772 202702772 C T KDM5B Silent p.R1222R 0.14 TCGA-EE-A3JD-06 1 203317043 203317043 G A FMOD Missense_Mutation p.S119F 0.12 deleterious(0) possibly_damaging(0.639) TCGA-EE-A3JD-06 1 205138587 205138587 A G DSTYK Missense_Mutation p.L343S 0.06 deleterious(0.04) possibly_damaging(0.864) TCGA-EE-A3JD-06 1 210856645 210856645 C T KCNH1 Missense_Mutation p.R983K 0.05 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A3JD-06 1 21154169 21154169 G A EIF4G3 Missense_Mutation p.P1354S 0.10 tolerated(0.06) probably_damaging(0.994) TCGA-EE-A3JD-06 1 215955512 215955512 G A USH2A Nonsense_Mutation p.R3538* 0.08 TCGA-EE-A3JD-06 1 215972435 215972435 G A USH2A Missense_Mutation p.R3258W 0.17 possibly_damaging(0.651) TCGA-EE-A3JD-06 1 21799382 21799382 G A NBPF3 Silent p.E236E 0.12 TCGA-EE-A3JD-06 1 220791732 220791732 C G MARK1 Missense_Mutation p.N211K 0.12 tolerated(0.07) benign(0.055) TCGA-EE-A3JD-06 1 220826512 220826512 C T MARK1 Silent p.T602T 0.07 TCGA-EE-A3JD-06 1 222717004 222717004 G A HHIPL2 Silent p.F283F 0.10 TCGA-EE-A3JD-06 1 22303559 22303559 C T CELA3B Silent p.L9L 0.10 TCGA-EE-A3JD-06 1 22303560 22303560 C T CELA3B Missense_Mutation p.L10F 0.10 tolerated(0.12) probably_damaging(0.933) TCGA-EE-A3JD-06 1 223567889 223567889 C T C1orf65 Nonsense_Mutation p.Q358* 0.16 TCGA-EE-A3JD-06 1 223568504 223568504 G A C1orf65 Missense_Mutation p.E563K 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 1 226923450 226923450 G A ITPKB Silent p.I570I 0.20 TCGA-EE-A3JD-06 1 227387341 227387341 G A CDC42BPA Missense_Mutation p.R123C 0.11 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 1 227842052 227842052 C T ZNF678 Missense_Mutation p.S34F 0.08 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 1 227843146 227843146 C T ZNF678 Missense_Mutation p.H399Y 0.11 deleterious(0.01) probably_damaging(0.947) TCGA-EE-A3JD-06 1 228524724 228524724 G A OBSCN Silent p.K6476K 0.19 TCGA-EE-A3JD-06 1 22902820 22902820 C T EPHA8 Silent p.P90P 0.07 TCGA-EE-A3JD-06 1 229773938 229773938 C T URB2 Missense_Mutation p.P1193L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 23111267 23111267 C T EPHB2 Missense_Mutation p.S170F 0.09 deleterious(0) probably_damaging(0.955) TCGA-EE-A3JD-06 1 23235552 23235552 C T EPHB2 Missense_Mutation p.A798V 0.13 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A3JD-06 1 23235553 23235553 C T EPHB2 Silent p.A798A 0.12 TCGA-EE-A3JD-06 1 23236934 23236934 C T EPHB2 Silent p.A855A 0.08 TCGA-EE-A3JD-06 1 23236960 23236960 G A EPHB2 Nonsense_Mutation p.W864* 0.09 TCGA-EE-A3JD-06 1 23236961 23236961 G A EPHB2 Nonsense_Mutation p.W864* 0.09 TCGA-EE-A3JD-06 1 232581470 232581470 G A SIPA1L2 Missense_Mutation p.P1053L 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JD-06 1 233193016 233193016 G A PCNXL2 Missense_Mutation p.S1366F 0.11 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JD-06 1 233514958 233514958 G A MLK4 Missense_Mutation p.G736R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 233518169 233518169 C T MLK4 Silent p.I941I 0.12 TCGA-EE-A3JD-06 1 240286504 240286504 C T FMN2 Silent p.F547F 0.13 TCGA-EE-A3JD-06 1 24123214 24123214 C T GALE Silent p.R256R 0.12 TCGA-EE-A3JD-06 1 24140701 24140701 G A HMGCL Missense_Mutation p.S159L 0.11 tolerated(0.21) benign(0.026) TCGA-EE-A3JD-06 1 241761094 241761094 G A OPN3 Missense_Mutation p.S300L 0.08 deleterious(0.02) possibly_damaging(0.692) TCGA-EE-A3JD-06 1 24180929 24180929 G A FUCA1 Missense_Mutation p.T297I 0.13 tolerated(0.06) possibly_damaging(0.772) TCGA-EE-A3JD-06 1 241907714 241907714 G A WDR64 Missense_Mutation p.G487E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 241964495 241964495 T C WDR64 Missense_Mutation p.F1075S 0.13 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-EE-A3JD-06 1 24202038 24202038 C T CNR2 Missense_Mutation p.D24N 0.09 tolerated(1) benign(0.002) TCGA-EE-A3JD-06 1 242042276 242042276 T C EXO1 Silent p.F580F 0.06 TCGA-EE-A3JD-06 1 24413170 24413170 C T MYOM3 Missense_Mutation p.E588K 0.13 tolerated(0.11) benign(0.026) TCGA-EE-A3JD-06 1 244218280 244218280 T C ZBTB18 Missense_Mutation p.F402L 0.13 deleterious(0.02) benign(0.033) TCGA-EE-A3JD-06 1 244541927 244541927 C A C1orf100 Missense_Mutation p.P104Q 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 244716054 244716054 C T C1orf101 Missense_Mutation p.P323S 0.09 tolerated(0.06) probably_damaging(0.957) TCGA-EE-A3JD-06 1 247464520 247464520 G A ZNF496 Silent p.I355I 0.13 TCGA-EE-A3JD-06 1 247614472 247614472 G A OR2B11 Silent p.S271S 0.08 TCGA-EE-A3JD-06 1 247614640 247614640 C T OR2B11 Silent p.L215L 0.10 TCGA-EE-A3JD-06 1 247694920 247694920 C T OR2C3 Silent p.V298V 0.08 TCGA-EE-A3JD-06 1 247769183 247769183 C T OR2G3 Missense_Mutation p.A99V 0.10 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 1 247835623 247835623 G A OR13G1 Missense_Mutation p.H241Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 1 247836167 247836167 G A OR13G1 Silent p.F59F 0.12 TCGA-EE-A3JD-06 1 248112360 248112360 C T OR2L8 Silent p.L67L 0.11 TCGA-EE-A3JD-06 1 248790184 248790184 C T OR2T11 Missense_Mutation p.M82I 0.21 tolerated(0.38) benign(0.008) TCGA-EE-A3JD-06 1 249107282 249107282 G A SH3BP5L Missense_Mutation p.A206V 0.30 tolerated(0.06) benign(0.223) TCGA-EE-A3JD-06 1 25747261 25747261 G A RHCE Missense_Mutation p.P6L 0.14 deleterious(0) probably_damaging(0.974) TCGA-EE-A3JD-06 1 26620706 26620706 G A UBXN11 Silent p.F183F 0.07 TCGA-EE-A3JD-06 1 26691383 26691383 G A ZNF683 Silent p.H218H 0.13 TCGA-EE-A3JD-06 1 26873383 26873383 C T RPS6KA1 Missense_Mutation p.S54F 0.13 deleterious(0.01) possibly_damaging(0.588) TCGA-EE-A3JD-06 1 27332849 27332849 C T FAM46B Silent p.R288R 0.21 TCGA-EE-A3JD-06 1 27631507 27631507 C T WDTC1 Silent p.I552I 0.11 TCGA-EE-A3JD-06 1 27683576 27683576 G A MAP3K6 Silent p.I1096I 0.12 TCGA-EE-A3JD-06 1 28282350 28282350 C T SMPDL3B Silent p.S282S 0.08 TCGA-EE-A3JD-06 1 2939396 2939396 C T ACTRT2 3'UTR 0.16 TCGA-EE-A3JD-06 1 29637977 29637977 C T PTPRU Missense_Mutation p.P966L 0.07 deleterious(0.01) benign(0.155) TCGA-EE-A3JD-06 1 32221940 32221940 G A BAI2 Silent p.P166P 0.13 TCGA-EE-A3JD-06 1 32257851 32257851 G A SPOCD1 Missense_Mutation p.P976L 0.24 deleterious(0.01) benign(0.267) TCGA-EE-A3JD-06 1 32279739 32279739 G A SPOCD1 Missense_Mutation p.S399F 0.18 tolerated_low_confidence(0.1) benign(0.019) TCGA-EE-A3JD-06 1 32843591 32843591 G A BSDC1 Missense_Mutation p.P236L 0.19 tolerated(0.14) benign(0.109) TCGA-EE-A3JD-06 1 33583681 33583681 C T ADC Missense_Mutation p.A403V 0.12 deleterious(0.05) benign(0.174) TCGA-EE-A3JD-06 1 33797021 33797021 A C PHC2 Missense_Mutation p.L644R 0.09 deleterious(0) possibly_damaging(0.885) TCGA-EE-A3JD-06 1 33999493 33999493 G A CSMD2 Silent p.V3154V 0.13 TCGA-EE-A3JD-06 1 34011769 34011769 G A CSMD2 Missense_Mutation p.R2846C 0.09 deleterious(0) probably_damaging(0.932) TCGA-EE-A3JD-06 1 34033348 34033348 G A CSMD2 Missense_Mutation p.P2719L 0.23 deleterious(0.03) probably_damaging(0.973) TCGA-EE-A3JD-06 1 34076818 34076818 C T CSMD2 Missense_Mutation p.E2016K 0.08 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 1 34174747 34174747 C A CSMD2 Missense_Mutation p.G1133V 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 1 34401380 34401380 G A CSMD2 Silent p.F191F 0.08 TCGA-EE-A3JD-06 1 35223450 35223450 G A GJB5 Silent p.V173V 0.08 TCGA-EE-A3JD-06 1 35260594 35260594 G A GJA4 Silent p.T260T 0.09 TCGA-EE-A3JD-06 1 35333169 35333169 G A DLGAP3 Nonsense_Mutation p.Q849* 0.10 TCGA-EE-A3JD-06 1 35476563 35476563 C T ZMYM6 Silent p.P379P 0.11 TCGA-EE-A3JD-06 1 36096883 36096883 G A PSMB2 Missense_Mutation p.R93W 0.14 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 36752050 36752050 C T THRAP3 Silent p.F73F 0.12 TCGA-EE-A3JD-06 1 3686406 3686406 C T CCDC27 Silent p.S601S 0.07 TCGA-EE-A3JD-06 1 37307342 37307342 C T GRIK3 Missense_Mutation p.D509N 0.14 deleterious(0.03) benign(0.226) TCGA-EE-A3JD-06 1 37337863 37337863 C T GRIK3 Missense_Mutation p.E220K 0.12 deleterious(0) probably_damaging(0.942) TCGA-EE-A3JD-06 1 3753954 3753954 G A CEP104 Missense_Mutation p.L341F 0.15 tolerated(0.06) benign(0.094) TCGA-EE-A3JD-06 1 38027303 38027303 G A DNALI1 Silent p.Q203Q 0.07 TCGA-EE-A3JD-06 1 38149126 38149126 G A C1orf109 Intron 0.10 TCGA-EE-A3JD-06 1 39823112 39823112 C T MACF1 Silent p.A1768A 0.10 TCGA-EE-A3JD-06 1 41006293 41006293 C T ZNF684 Silent p.F17F 0.08 TCGA-EE-A3JD-06 1 41978819 41978819 G A HIVEP3 Missense_Mutation p.P2025S 0.10 benign(0.003) TCGA-EE-A3JD-06 1 42046804 42046804 G A HIVEP3 Missense_Mutation p.S1222F 0.09 possibly_damaging(0.748) TCGA-EE-A3JD-06 1 43649366 43649366 G A WDR65 Silent p.Q193Q 0.08 TCGA-EE-A3JD-06 1 43783338 43783338 G A TIE1 Silent p.K908K 0.07 TCGA-EE-A3JD-06 1 43805058 43805058 C T MPL Missense_Mutation p.R170C 0.12 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A3JD-06 1 43825729 43825729 G A CDC20 Missense_Mutation p.D173N 0.11 deleterious(0) possibly_damaging(0.641) TCGA-EE-A3JD-06 1 43907790 43907790 C T SZT2 Missense_Mutation p.P2564L 0.09 deleterious(0.03) possibly_damaging(0.735) TCGA-EE-A3JD-06 1 44467209 44467209 G A SLC6A9 Silent p.H424H 0.13 TCGA-EE-A3JD-06 1 44878025 44878025 C T RNF220 Missense_Mutation p.R86C 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3JD-06 1 47280848 47280848 C T CYP4B1 Missense_Mutation p.L329F 0.14 tolerated(0.32) probably_damaging(0.999) TCGA-EE-A3JD-06 1 47365968 47365968 G A CYP4Z2P RNA 0.11 TCGA-EE-A3JD-06 1 47402423 47402423 C T CYP4A11 Silent p.Q141Q 0.19 TCGA-EE-A3JD-06 1 47611954 47611954 G A CYP4A22 Intron 0.15 TCGA-EE-A3JD-06 1 47685586 47685586 C T TAL1 Missense_Mutation p.G268R 0.15 tolerated(0.09) possibly_damaging(0.831) TCGA-EE-A3JD-06 1 4772473 4772473 C T AJAP1 Silent p.I181I 0.26 TCGA-EE-A3JD-06 1 50661409 50661409 C T ELAVL4 Missense_Mutation p.P246S 0.12 tolerated(0.13) benign(0.04) TCGA-EE-A3JD-06 1 52704528 52704528 C T ZFYVE9 Missense_Mutation p.S480F 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 52854944 52854944 G A ORC1 Missense_Mutation p.R378C 0.10 deleterious(0) possibly_damaging(0.816) TCGA-EE-A3JD-06 1 52941065 52941065 G A ZCCHC11 Silent p.F722F 0.12 TCGA-EE-A3JD-06 1 53459256 53459256 C T SCP2 Intron 0.07 TCGA-EE-A3JD-06 1 53728233 53728233 G A LRP8 Silent p.F553F 0.12 TCGA-EE-A3JD-06 1 55080513 55080513 C T FAM151A Silent p.K145K 0.10 TCGA-EE-A3JD-06 1 55118580 55118580 G A MROH7 5'UTR 0.10 TCGA-EE-A3JD-06 1 55168407 55168407 T C MROH7 Missense_Mutation p.C1185R 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 55174698 55174698 C T MROH7 Missense_Mutation p.P1227S 0.12 tolerated(0.07) possibly_damaging(0.701) TCGA-EE-A3JD-06 1 55174706 55174706 G A MROH7 Missense_Mutation p.M1229I 0.12 deleterious(0.04) benign(0.041) TCGA-EE-A3JD-06 1 56989547 56989547 G A PPAP2B Missense_Mutation p.S194F 0.18 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 1 57257848 57257848 G A C1orf168 Missense_Mutation p.P213L 0.09 tolerated(0.06) benign(0.103) TCGA-EE-A3JD-06 1 57347208 57347208 G A C8A Nonsense_Mutation p.W185* 0.07 TCGA-EE-A3JD-06 1 57351798 57351798 G A C8A Missense_Mutation p.E352K 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 1 60294498 60294498 G A HOOK1 Missense_Mutation p.D66N 0.13 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A3JD-06 1 6181208 6181208 C T CHD5 Silent p.E1623E 0.16 TCGA-EE-A3JD-06 1 62327220 62327220 C T INADL Intron 0.10 TCGA-EE-A3JD-06 1 62740699 62740699 G A KANK4 Missense_Mutation p.S26F 0.10 deleterious(0) possibly_damaging(0.863) TCGA-EE-A3JD-06 1 63018492 63018492 G A DOCK7 Missense_Mutation p.R893C 0.12 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3JD-06 1 63920636 63920636 G T ITGB3BP Missense_Mutation p.F125L 0.10 tolerated(0.15) benign(0.011) TCGA-EE-A3JD-06 1 64022859 64022859 T G EFCAB7 Missense_Mutation p.F430C 0.09 tolerated(0.06) benign(0.183) TCGA-EE-A3JD-06 1 66384348 66384348 C T PDE4B Silent p.I37I 0.12 TCGA-EE-A3JD-06 1 67108540 67108540 A G SGIP1 Silent p.E92E 0.11 TCGA-EE-A3JD-06 1 70502226 70502226 G A LRRC7 Missense_Mutation p.G698E 0.12 deleterious_low_confidence(0) benign(0.43) TCGA-EE-A3JD-06 1 70573452 70573452 G A LRRC7 Silent p.R1483R 0.07 TCGA-EE-A3JD-06 1 71318539 71318539 C T PTGER3 Missense_Mutation p.E370K 0.11 tolerated(0.32) benign(0) TCGA-EE-A3JD-06 1 74492524 74492524 A G LRRIQ3 Silent p.F616F 0.12 TCGA-EE-A3JD-06 1 75037164 75037164 C T C1orf173 Silent p.R1410R 0.13 TCGA-EE-A3JD-06 1 75038462 75038462 C T C1orf173 Missense_Mutation p.E978K 0.16 tolerated(0.08) benign(0.168) TCGA-EE-A3JD-06 1 75055570 75055570 C T C1orf173 Missense_Mutation p.E641K 0.12 tolerated(0.06) benign(0.062) TCGA-EE-A3JD-06 1 78479176 78479176 G A DNAJB4 Missense_Mutation p.R218K 0.13 tolerated(1) benign(0.002) TCGA-EE-A3JD-06 1 79002119 79002119 G A PTGFR Missense_Mutation p.G276E 0.24 tolerated(1) benign(0.004) TCGA-EE-A3JD-06 1 82431795 82431795 C T LPHN2 Missense_Mutation p.P674S 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 82447627 82447627 C T LPHN2 Silent p.F1066F 0.08 TCGA-EE-A3JD-06 1 8390417 8390417 C T SLC45A1 Silent p.I288I 0.23 TCGA-EE-A3JD-06 1 8390569 8390569 C T SLC45A1 Missense_Mutation p.S339L 0.19 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 8420028 8420028 G A RERE Silent p.D1138D 0.11 TCGA-EE-A3JD-06 1 85135491 85135491 A G SSX2IP Missense_Mutation p.L100P 0.19 deleterious(0) probably_damaging(0.968) TCGA-EE-A3JD-06 1 85403715 85403715 G A MCOLN2 Silent p.L387L 0.16 TCGA-EE-A3JD-06 1 87041153 87041153 C T CLCA4 Missense_Mutation p.P608S 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JD-06 1 89615201 89615201 G A GBP7 Missense_Mutation p.P309L 0.12 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 1 89618020 89618020 C T GBP7 Missense_Mutation p.E186K 0.13 tolerated(0.11) possibly_damaging(0.58) TCGA-EE-A3JD-06 1 89850978 89850978 G A GBP6 Missense_Mutation p.G618S 0.13 tolerated(0.41) benign(0.024) TCGA-EE-A3JD-06 1 9097674 9097674 C T SLC2A5 Missense_Mutation p.E493K 0.11 tolerated(0.19) benign(0.001) TCGA-EE-A3JD-06 1 91779569 91779569 C T HFM1 Silent p.V1063V 0.06 TCGA-EE-A3JD-06 1 92707815 92707815 G A C1orf146 Missense_Mutation p.R38Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JD-06 1 93169017 93169017 G A EVI5 Missense_Mutation p.P211S 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 1 94335415 94335415 G A DNTTIP2 Missense_Mutation p.R755C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 1 94471002 94471002 C T ABCA4 Missense_Mutation p.E2048K 0.08 tolerated(0.53) benign(0.013) TCGA-EE-A3JD-06 1 94643546 94643546 G A ARHGAP29 Silent p.F886F 0.09 TCGA-EE-A3JD-06 1 97544590 97544590 C T DPYD Missense_Mutation p.R1007K 0.09 tolerated(0.4) benign(0.008) TCGA-EE-A3JD-06 1 9776047 9776047 C T PIK3CD Silent p.L171L 0.14 TCGA-EE-A3JD-06 1 97981349 97981349 G A DPYD Missense_Mutation p.S558L 0.11 tolerated(0.26) benign(0.047) TCGA-EE-A3JD-06 1 98164926 98164926 C T DPYD Missense_Mutation p.E221K 0.13 tolerated(0.66) benign(0) TCGA-EE-A3JD-06 20 1616848 1616848 G A SIRPG Missense_Mutation p.S245F 0.09 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JD-06 20 16359754 16359754 G A KIF16B Nonsense_Mutation p.Q965* 0.07 TCGA-EE-A3JD-06 20 18297413 18297413 C T ZNF133 Missense_Mutation p.P639S 0.06 tolerated_low_confidence(0.63) benign(0.001) TCGA-EE-A3JD-06 20 19665885 19665885 G A SLC24A3 Missense_Mutation p.D402N 0.10 tolerated(0.54) benign(0.051) TCGA-EE-A3JD-06 20 19701814 19701814 C T SLC24A3 3'UTR 0.08 TCGA-EE-A3JD-06 20 19977320 19977320 C T RIN2 Intron 0.12 TCGA-EE-A3JD-06 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.19 deleterious_low_confidence(0) benign(0.022) TCGA-EE-A3JD-06 20 20037364 20037364 G A C20orf26 Missense_Mutation p.D23N 0.06 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 20 20055886 20055886 C T C20orf26 Missense_Mutation p.S142F 0.07 deleterious(0.03) benign(0.385) TCGA-EE-A3JD-06 20 20172021 20172021 T C C20orf26 Silent p.V516V 0.10 TCGA-EE-A3JD-06 20 2308916 2308916 C T TGM3 Missense_Mutation p.S413F 0.10 tolerated(0.7) benign(0.004) TCGA-EE-A3JD-06 20 2321117 2321117 C T TGM3 Missense_Mutation p.R658C 0.12 tolerated(0.05) benign(0.091) TCGA-EE-A3JD-06 20 23472403 23472403 G A CST8 Silent p.R33R 0.08 TCGA-EE-A3JD-06 20 2413173 2413173 C T TGM6 Nonsense_Mutation p.Q669* 0.07 TCGA-EE-A3JD-06 20 24524035 24524035 C T SYNDIG1 Missense_Mutation p.S101F 0.06 tolerated(0.06) benign(0.265) TCGA-EE-A3JD-06 20 24565605 24565605 C T SYNDIG1 Silent p.I198I 0.08 TCGA-EE-A3JD-06 20 25287536 25287536 G A ABHD12 Missense_Mutation p.P295S 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 20 25443048 25443048 C T NINL Missense_Mutation p.E1185K 0.11 tolerated(0.07) probably_damaging(0.989) TCGA-EE-A3JD-06 20 29891226 29891226 C T DEFB116 Missense_Mutation p.S33N 0.08 tolerated(0.65) benign(0.004) TCGA-EE-A3JD-06 20 30451750 30451750 G A DUSP15 Missense_Mutation p.H75Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 20 30617617 30617617 G A CCM2L 3'UTR 0.15 TCGA-EE-A3JD-06 20 31627275 31627275 C T BPIFB6 Silent p.F341F 0.08 TCGA-EE-A3JD-06 20 31757083 31757083 T C BPIFA2 Silent p.L44L 0.08 TCGA-EE-A3JD-06 20 31827637 31827637 G A BPIFA1 Missense_Mutation p.E117K 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3JD-06 20 31873889 31873889 C T BPIFB1 Missense_Mutation p.P4S 0.08 tolerated(0.2) benign(0.11) TCGA-EE-A3JD-06 20 32298412 32298412 G A PXMP4 Silent p.A108A 0.10 TCGA-EE-A3JD-06 20 33068912 33068912 C T ITCH Missense_Mutation p.S706F 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-EE-A3JD-06 20 34214176 34214176 G A CPNE1 Missense_Mutation p.A539V 0.10 tolerated(0.22) benign(0.001) TCGA-EE-A3JD-06 20 34809826 34809826 G A EPB41L1 Missense_Mutation p.R827Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 20 3571950 3571950 C A ATRN Missense_Mutation p.Q1107K 0.10 tolerated(0.14) benign(0.41) TCGA-EE-A3JD-06 20 35812603 35812603 T C RPN2 Silent p.L12L 0.13 TCGA-EE-A3JD-06 20 3651887 3651887 C T ADAM33 Missense_Mutation p.E697K 0.12 tolerated(0.23) benign(0.025) TCGA-EE-A3JD-06 20 36641227 36641227 G A TTI1 Missense_Mutation p.P331L 0.07 tolerated(0.41) benign(0.004) TCGA-EE-A3JD-06 20 36760865 36760865 G A TGM2 Silent p.Y551Y 0.10 TCGA-EE-A3JD-06 20 3686412 3686412 C T SIGLEC1 Missense_Mutation p.E229K 0.12 tolerated(0.12) benign(0.022) TCGA-EE-A3JD-06 20 36869720 36869720 G A KIAA1755 Silent p.F271F 0.06 TCGA-EE-A3JD-06 20 37153556 37153556 T C RALGAPB Silent p.F585F 0.09 TCGA-EE-A3JD-06 20 37634983 37634983 T C DHX35 Silent p.C402C 0.12 TCGA-EE-A3JD-06 20 39991054 39991054 A G EMILIN3 Silent p.C385C 0.13 TCGA-EE-A3JD-06 20 39991221 39991221 A C EMILIN3 Missense_Mutation p.C330G 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 20 39992363 39992363 C T EMILIN3 Silent p.L143L 0.07 TCGA-EE-A3JD-06 20 400039 400039 C T RBCK1 Missense_Mutation p.P170L 0.14 tolerated(0.26) benign(0.002) TCGA-EE-A3JD-06 20 40081463 40081463 C T CHD6 Silent p.T1080T 0.09 TCGA-EE-A3JD-06 20 41076964 41076964 C T PTPRT Missense_Mutation p.G486R 0.12 deleterious(0) possibly_damaging(0.761) TCGA-EE-A3JD-06 20 42199308 42199308 T C SGK2 Missense_Mutation p.F198L 0.06 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JD-06 20 43385538 43385538 C T RIMS4 Splice_Site p.X198_splice 0.09 TCGA-EE-A3JD-06 20 44171379 44171379 G A EPPIN Silent p.F117F 0.07 TCGA-EE-A3JD-06 20 44333576 44333576 C T WFDC10B Missense_Mutation p.D19N 0.09 tolerated_low_confidence(0.32) unknown(0) TCGA-EE-A3JD-06 20 44686252 44686252 G A SLC12A5 3'UTR 0.09 TCGA-EE-A3JD-06 20 44699028 44699028 G A NCOA5 Silent p.D62D 0.10 TCGA-EE-A3JD-06 20 45195025 45195025 G A SLC13A3 Missense_Mutation p.S446L 0.09 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 20 45354264 45354264 G A SLC2A10 Missense_Mutation p.D197N 0.11 tolerated(0.4) benign(0.403) TCGA-EE-A3JD-06 20 45725803 45725803 G A EYA2 Missense_Mutation p.G295E 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 20 47991320 47991320 C T KCNB1 Silent p.K259K 0.07 TCGA-EE-A3JD-06 20 47991372 47991372 A G KCNB1 Missense_Mutation p.M242T 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-EE-A3JD-06 20 49236546 49236546 G A FAM65C Silent p.F78F 0.12 TCGA-EE-A3JD-06 20 50255931 50255931 T G ATP9A Missense_Mutation p.Q540P 0.10 deleterious(0.02) possibly_damaging(0.555) TCGA-EE-A3JD-06 20 50768817 50768817 G A ZFP64 Silent p.I638I 0.11 TCGA-EE-A3JD-06 20 51871891 51871891 G A TSHZ2 Missense_Mutation p.D632N 0.13 tolerated(0.12) benign(0.04) TCGA-EE-A3JD-06 20 52193349 52193349 C T ZNF217 Missense_Mutation p.D652N 0.09 tolerated(0.16) possibly_damaging(0.529) TCGA-EE-A3JD-06 20 54578952 54578952 G A CBLN4 Silent p.I92I 0.10 TCGA-EE-A3JD-06 20 55211713 55211713 G A TFAP2C Missense_Mutation p.E324K 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 20 56098188 56098188 T C CTCFL Silent p.Q230Q 0.06 TCGA-EE-A3JD-06 20 57415170 57415170 G A RP4-806M20.3 5'Flank 0.09 TCGA-EE-A3JD-06 20 57566462 57566462 C T NELFCD Silent p.I368I 0.11 TCGA-EE-A3JD-06 20 57597906 57597906 G A TUBB1 Missense_Mutation p.E22K 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EE-A3JD-06 20 57768888 57768888 C T ZNF831 Silent p.S938S 0.06 TCGA-EE-A3JD-06 20 57768889 57768889 C T ZNF831 Missense_Mutation p.P939S 0.07 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 20 57768962 57768962 G A ZNF831 Missense_Mutation p.S963N 0.08 deleterious(0.03) benign(0.071) TCGA-EE-A3JD-06 20 58645027 58645027 C T C20orf197 5'UTR 0.08 TCGA-EE-A3JD-06 20 58883619 58883619 C T MIR646 RNA 0.09 TCGA-EE-A3JD-06 20 5897539 5897539 C T CHGB Missense_Mutation p.P55L 0.09 deleterious(0.03) probably_damaging(0.961) TCGA-EE-A3JD-06 20 60485640 60485640 G A CDH4 Missense_Mutation p.E451K 0.10 deleterious(0.01) possibly_damaging(0.756) TCGA-EE-A3JD-06 20 61511323 61511323 G A DIDO1 Silent p.S1995S 0.06 TCGA-EE-A3JD-06 20 61527623 61527623 G A DIDO1 Missense_Mutation p.R726C 0.12 probably_damaging(1) TCGA-EE-A3JD-06 20 61981983 61981983 G A CHRNA4 Silent p.L260L 0.07 TCGA-EE-A3JD-06 20 61982226 61982226 G A CHRNA4 Silent p.F179F 0.09 TCGA-EE-A3JD-06 20 62076714 62076714 T A KCNQ2 Missense_Mutation p.I131F 0.08 tolerated(0.83) probably_damaging(0.924) TCGA-EE-A3JD-06 20 62192271 62192271 G A HELZ2 Silent p.L2386L 0.10 TCGA-EE-A3JD-06 20 62324551 62324551 C T RTEL1 Silent p.I993I 0.10 TCGA-EE-A3JD-06 20 644918 644918 G A SCRT2 Silent p.S107S 0.11 TCGA-EE-A3JD-06 20 8626763 8626763 G A PLCB1 Silent p.E133E 0.14 TCGA-EE-A3JD-06 20 8665662 8665662 G A PLCB1 Missense_Mutation p.E316K 0.08 tolerated(0.07) benign(0.184) TCGA-EE-A3JD-06 20 9510461 9510461 G A LAMP5 Missense_Mutation p.M279I 0.08 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JD-06 20 9546694 9546694 C T PAK7 Missense_Mutation p.G443E 0.05 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 20 9561341 9561341 C T PAK7 Silent p.R147R 0.07 TCGA-EE-A3JD-06 21 15872876 15872876 C T SAMSN1 Missense_Mutation p.E316K 0.10 deleterious(0) probably_damaging(0.944) TCGA-EE-A3JD-06 21 19628935 19628935 T G CHODL Missense_Mutation p.S63R 0.09 tolerated(0.64) benign(0.2) TCGA-EE-A3JD-06 21 27423397 27423397 T C APP Missense_Mutation p.D194G 0.07 tolerated(0.18) unknown(0) TCGA-EE-A3JD-06 21 34889714 34889714 G A GART Missense_Mutation p.S635F 0.08 deleterious(0.01) benign(0.063) TCGA-EE-A3JD-06 21 35742925 35742925 A C KCNE2 Missense_Mutation p.I50L 0.10 deleterious(0.04) possibly_damaging(0.816) TCGA-EE-A3JD-06 21 35821850 35821850 G A KCNE1 Missense_Mutation p.S28L 0.08 deleterious(0.01) possibly_damaging(0.625) TCGA-EE-A3JD-06 21 38103386 38103386 G A SIM2 Missense_Mutation p.E262K 0.09 deleterious(0.02) possibly_damaging(0.845) TCGA-EE-A3JD-06 21 39086776 39086776 C T KCNJ6 Silent p.R228R 0.08 TCGA-EE-A3JD-06 21 39212969 39212969 C T KCNJ6 Missense_Mutation p.E6K 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-EE-A3JD-06 21 39493345 39493345 G A DSCR4 Missense_Mutation p.S2L 0.09 possibly_damaging(0.519) TCGA-EE-A3JD-06 21 40800157 40800157 G A LCA5L Missense_Mutation p.P88L 0.09 tolerated(0.25) benign(0.037) TCGA-EE-A3JD-06 21 41385037 41385037 G A DSCAM Missense_Mutation p.S1988F 0.15 deleterious_low_confidence(0) benign(0.014) TCGA-EE-A3JD-06 21 42064779 42064779 G A DSCAM Silent p.I155I 0.08 TCGA-EE-A3JD-06 21 42080489 42080489 G A DSCAM Silent p.F84F 0.08 TCGA-EE-A3JD-06 21 43327137 43327137 G A C2CD2 Missense_Mutation p.R428C 0.15 deleterious(0) benign(0.363) TCGA-EE-A3JD-06 21 43342097 43342097 G A C2CD2 Missense_Mutation p.S159F 0.14 deleterious(0.02) possibly_damaging(0.646) TCGA-EE-A3JD-06 21 43547240 43547240 G A UMODL1 Missense_Mutation p.E1268K 0.08 deleterious(0.01) possibly_damaging(0.801) TCGA-EE-A3JD-06 21 43547341 43547341 C T UMODL1 Silent p.F1301F 0.12 TCGA-EE-A3JD-06 21 43912898 43912898 A T RSPH1 Missense_Mutation p.F82I 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 21 44483156 44483156 G A CBS Silent p.L287L 0.10 TCGA-EE-A3JD-06 21 45821663 45821663 C T TRPM2 Silent p.F807F 0.08 TCGA-EE-A3JD-06 21 45929162 45929162 G A TSPEAR Silent p.S558S 0.11 TCGA-EE-A3JD-06 21 46078210 46078210 G A KRTAP12-3 3'UTR 0.09 TCGA-EE-A3JD-06 21 46306799 46306799 T C ITGB2 Missense_Mutation p.N700S 0.10 tolerated(0.12) possibly_damaging(0.861) TCGA-EE-A3JD-06 21 46308786 46308786 G A ITGB2 Silent p.F634F 0.11 TCGA-EE-A3JD-06 21 47349880 47349880 C T PCBP3 Missense_Mutation p.P256L 0.08 tolerated(0.12) benign(0.003) TCGA-EE-A3JD-06 21 47692664 47692664 G T MCM3AP Missense_Mutation p.A759D 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 22 17117965 17117965 C T TPTEP1 RNA 0.10 TCGA-EE-A3JD-06 22 19459311 19459311 G A UFD1L Missense_Mutation p.P64S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 22 19467426 19467426 G A CDC45 5'UTR 0.13 TCGA-EE-A3JD-06 22 19495026 19495026 C T CDC45 Silent p.F346F 0.08 TCGA-EE-A3JD-06 22 19770515 19770515 C T GNB1L 3'Flank 0.06 TCGA-EE-A3JD-06 22 19918599 19918599 G A TXNRD2 Silent p.L42L 0.09 TCGA-EE-A3JD-06 22 20729854 20729854 T A USP41 Missense_Mutation p.K109M 0.11 tolerated(0.08) probably_damaging(0.978) TCGA-EE-A3JD-06 22 20936973 20936973 C T MED15 Missense_Mutation p.P450S 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-EE-A3JD-06 22 21082078 21082078 A G PI4KA Missense_Mutation p.V1586A 0.10 deleterious(0) benign(0.217) TCGA-EE-A3JD-06 22 21107419 21107419 G A PI4KA Silent p.F947F 0.08 TCGA-EE-A3JD-06 22 21174039 21174039 G A PI4KA Nonsense_Mutation p.R227* 0.09 TCGA-EE-A3JD-06 22 21363317 21363317 C T AC002472.1 5'Flank 0.08 TCGA-EE-A3JD-06 22 22682155 22682155 G A IGLV1-50 Missense_Mutation p.D113N 0.07 deleterious_low_confidence(0.02) benign(0.168) TCGA-EE-A3JD-06 22 22843023 22843023 G A ZNF280B Missense_Mutation p.P234L 0.11 tolerated(0.11) benign(0.012) TCGA-EE-A3JD-06 22 22893200 22893200 C T PRAME Silent p.E111E 0.07 TCGA-EE-A3JD-06 22 23047302 23047302 C T IGLV3-22 Missense_Mutation p.P114S 0.10 tolerated_low_confidence(0.35) benign(0) TCGA-EE-A3JD-06 22 23114933 23114933 G A IGLV3-12 Missense_Mutation p.D69N 0.12 tolerated(0.16) benign(0.048) TCGA-EE-A3JD-06 22 23438189 23438189 G A GNAZ Missense_Mutation p.D103N 0.11 tolerated(0.08) possibly_damaging(0.739) TCGA-EE-A3JD-06 22 23657640 23657640 C T BCR Silent p.F1249F 0.10 TCGA-EE-A3JD-06 22 24837187 24837187 C T ADORA2A Silent p.V323V 0.14 TCGA-EE-A3JD-06 22 24985893 24985893 G A FAM211B Missense_Mutation p.L68F 0.11 tolerated(0.07) possibly_damaging(0.681) TCGA-EE-A3JD-06 22 26707874 26707874 G A SEZ6L Missense_Mutation p.E608K 0.13 deleterious(0) probably_damaging(0.933) TCGA-EE-A3JD-06 22 26860447 26860447 G A HPS4 Silent p.A383A 0.12 TCGA-EE-A3JD-06 22 29440777 29440777 G A ZNRF3 Missense_Mutation p.E215K 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3JD-06 22 29752421 29752421 G A AP1B1 Missense_Mutation p.A237V 0.09 deleterious(0) benign(0.164) TCGA-EE-A3JD-06 22 29885663 29885663 G A NEFH Silent p.E678E 0.10 TCGA-EE-A3JD-06 22 30124660 30124660 G A CABP7 Missense_Mutation p.G99R 0.09 deleterious(0) probably_damaging(0.911) TCGA-EE-A3JD-06 22 30186469 30186469 G A ASCC2 Silent p.L697L 0.08 TCGA-EE-A3JD-06 22 30186482 30186482 C G ASCC2 Missense_Mutation p.R693P 0.09 deleterious(0) probably_damaging(0.947) TCGA-EE-A3JD-06 22 30690065 30690065 G A TBC1D10A Missense_Mutation p.S254L 0.09 deleterious(0) benign(0.069) TCGA-EE-A3JD-06 22 30864656 30864656 G A SEC14L3 Silent p.L88L 0.07 TCGA-EE-A3JD-06 22 30891572 30891572 C T SEC14L4 Missense_Mutation p.E78K 0.22 deleterious(0.01) benign(0.251) TCGA-EE-A3JD-06 22 30951849 30951849 G A GAL3ST1 Silent p.F121F 0.08 TCGA-EE-A3JD-06 22 31283422 31283422 G A OSBP2 Missense_Mutation p.D373N 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 22 32211175 32211175 C T DEPDC5 Missense_Mutation p.S548F 0.11 tolerated(0.08) probably_damaging(0.979) TCGA-EE-A3JD-06 22 32445948 32445948 C T SLC5A1 Missense_Mutation p.R52C 0.07 deleterious(0) possibly_damaging(0.719) TCGA-EE-A3JD-06 22 32614620 32614620 C T SLC5A4 Missense_Mutation p.E621K 0.22 tolerated(0.44) benign(0.018) TCGA-EE-A3JD-06 22 32831831 32831831 G A BPIFC Missense_Mutation p.P262S 0.13 deleterious(0.02) probably_damaging(0.918) TCGA-EE-A3JD-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 22 36541577 36541577 G A APOL3 Silent p.I98I 0.19 TCGA-EE-A3JD-06 22 36556777 36556777 C T APOL3 Missense_Mutation p.G55R 0.07 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A3JD-06 22 36983535 36983535 G A CACNG2 Missense_Mutation p.A91V 0.08 tolerated(0.12) possibly_damaging(0.453) TCGA-EE-A3JD-06 22 37328825 37328825 C T CSF2RB Missense_Mutation p.S344F 0.11 deleterious(0.01) benign(0.437) TCGA-EE-A3JD-06 22 37465319 37465319 C T TMPRSS6 Missense_Mutation p.G645E 0.27 tolerated(0.26) possibly_damaging(0.497) TCGA-EE-A3JD-06 22 37492087 37492087 G A TMPRSS6 Missense_Mutation p.P159S 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 22 37637630 37637630 G A RAC2 Missense_Mutation p.T35I 0.09 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-EE-A3JD-06 22 37771253 37771253 G A ELFN2 Silent p.L108L 0.11 TCGA-EE-A3JD-06 22 38121238 38121238 C T TRIOBP Missense_Mutation p.P892L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-EE-A3JD-06 22 38349106 38349106 C T C22orf23 Silent p.R17R 0.19 TCGA-EE-A3JD-06 22 38823168 38823168 C T KCNJ4 Missense_Mutation p.E324K 0.11 tolerated(0.69) possibly_damaging(0.586) TCGA-EE-A3JD-06 22 39122090 39122090 C T GTPBP1 Missense_Mutation p.P385S 0.10 tolerated(0.54) benign(0.014) TCGA-EE-A3JD-06 22 39222561 39222561 C T NPTXR Missense_Mutation p.E348K 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 22 39224437 39224437 C T NPTXR Missense_Mutation p.M235I 0.14 tolerated(0.9) possibly_damaging(0.561) TCGA-EE-A3JD-06 22 39357683 39357683 G A APOBEC3A Missense_Mutation p.D156N 0.09 tolerated(0.41) benign(0.084) TCGA-EE-A3JD-06 22 39477501 39477501 C T APOBEC3G Silent p.F164F 0.06 TCGA-EE-A3JD-06 22 39909778 39909778 C T MIEF1 Missense_Mutation p.S281F 0.16 deleterious(0) possibly_damaging(0.745) TCGA-EE-A3JD-06 22 39966937 39966937 C T CACNA1I Silent p.F60F 0.16 TCGA-EE-A3JD-06 22 40055757 40055757 C T CACNA1I Missense_Mutation p.S835F 0.06 deleterious(0) possibly_damaging(0.788) TCGA-EE-A3JD-06 22 40061553 40061553 C T CACNA1I Missense_Mutation p.S1301F 0.08 deleterious(0) possibly_damaging(0.788) TCGA-EE-A3JD-06 22 40061578 40061578 C T CACNA1I Silent p.I1309I 0.14 TCGA-EE-A3JD-06 22 40708576 40708576 C T TNRC6B Silent p.T1501T 0.11 TCGA-EE-A3JD-06 22 40759030 40759030 G A ADSL Silent p.L352L 0.08 TCGA-EE-A3JD-06 22 40827465 40827465 C T MKL1 Missense_Mutation p.R28Q 0.05 deleterious(0.04) possibly_damaging(0.68) TCGA-EE-A3JD-06 22 41513752 41513752 T C EP300 Missense_Mutation p.L219P 0.13 unknown(0) TCGA-EE-A3JD-06 22 42422880 42422880 G A WBP2NL Missense_Mutation p.G209R 0.22 tolerated(0.09) possibly_damaging(0.901) TCGA-EE-A3JD-06 22 43568525 43568525 G A TTLL12 Silent p.F459F 0.11 TCGA-EE-A3JD-06 22 43570582 43570582 G A TTLL12 Silent p.T319T 0.06 TCGA-EE-A3JD-06 22 43936104 43936104 C T EFCAB6 Missense_Mutation p.G1261E 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-EE-A3JD-06 22 43976448 43976448 C T EFCAB6 Missense_Mutation p.E1042K 0.04 tolerated(0.07) benign(0.071) TCGA-EE-A3JD-06 22 44004434 44004434 C T EFCAB6 Missense_Mutation p.R870Q 0.20 deleterious(0.01) probably_damaging(0.922) TCGA-EE-A3JD-06 22 44342537 44342537 C T PNPLA3 3'UTR 0.17 TCGA-EE-A3JD-06 22 45258223 45258223 G A PRR5-ARHGAP8 Silent p.L560L 0.06 TCGA-EE-A3JD-06 22 45309722 45309722 G A PHF21B Missense_Mutation p.P271S 0.18 tolerated_low_confidence(0.25) benign(0.005) TCGA-EE-A3JD-06 22 45768122 45768122 G A SMC1B Silent p.T703T 0.19 TCGA-EE-A3JD-06 22 45938072 45938072 G A FBLN1 Silent p.G368G 0.06 TCGA-EE-A3JD-06 22 45961093 45961093 G A FBLN1 Intron 0.12 TCGA-EE-A3JD-06 22 46318672 46318672 G A WNT7B 3'UTR 0.12 TCGA-EE-A3JD-06 22 46654470 46654470 C T PKDREJ Missense_Mutation p.V1584I 0.10 tolerated(0.13) benign(0.295) TCGA-EE-A3JD-06 22 50167766 50167766 G A BRD1 3'UTR 0.31 TCGA-EE-A3JD-06 22 50716154 50716154 A G PLXNB2 Missense_Mutation p.F1688L 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 22 50832478 50832478 C T PPP6R2 Silent p.F47F 0.08 TCGA-EE-A3JD-06 22 50873432 50873432 C T PPP6R2 Missense_Mutation p.L481F 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 100199320 100199320 G A AFF3 Silent p.A936A 0.08 TCGA-EE-A3JD-06 2 101099714 101099714 G A NMS Silent p.Q150Q 0.15 TCGA-EE-A3JD-06 2 101580569 101580569 C T NPAS2 Silent p.C216C 0.08 TCGA-EE-A3JD-06 2 103013022 103013022 G A IL18R1 Silent p.E434E 0.16 TCGA-EE-A3JD-06 2 103300777 103300777 C T SLC9A2 Silent p.F469F 0.08 TCGA-EE-A3JD-06 2 108608652 108608652 G A SLC5A7 Missense_Mutation p.G90E 0.10 deleterious(0) probably_damaging(0.99) TCGA-EE-A3JD-06 2 109527316 109527316 G A EDAR Intron 0.12 TCGA-EE-A3JD-06 2 111881552 111881552 C T BCL2L11 Missense_Mutation p.S77F 0.06 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 2 113322065 113322065 C T POLR1B Missense_Mutation p.R579C 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 11376073 11376073 G A ROCK2 Nonsense_Mutation p.Q160* 0.10 TCGA-EE-A3JD-06 2 122285421 122285421 G A CLASP1 Missense_Mutation p.R142C 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 2 125547539 125547539 G A CNTNAP5 Missense_Mutation p.G937E 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 2 127808401 127808401 G A BIN1 Silent p.L517L 0.12 TCGA-EE-A3JD-06 2 127821182 127821182 C T BIN1 Missense_Mutation p.G247S 0.08 tolerated(0.38) probably_damaging(0.999) TCGA-EE-A3JD-06 2 127821555 127821555 C T BIN1 Missense_Mutation p.E218K 0.09 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JD-06 2 128261059 128261059 G A IWS1 Missense_Mutation p.S438F 0.08 deleterious(0) possibly_damaging(0.794) TCGA-EE-A3JD-06 2 130953884 130953884 C T TUBA3E Missense_Mutation p.E22K 0.04 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 2 131487693 131487693 C T GPR148 Silent p.R323R 0.11 TCGA-EE-A3JD-06 2 131688698 131688698 G A ARHGEF4 Silent p.R56R 0.08 TCGA-EE-A3JD-06 2 131976441 131976441 G A POTEE Missense_Mutation p.D156N 0.04 tolerated_low_confidence(0.08) possibly_damaging(0.822) TCGA-EE-A3JD-06 2 132273898 132273898 C T AC093838.4 RNA 0.15 TCGA-EE-A3JD-06 2 132288265 132288265 G A CCDC74A Missense_Mutation p.E137K 0.08 tolerated(0.67) benign(0.076) TCGA-EE-A3JD-06 2 133541805 133541805 C T NCKAP5 Missense_Mutation p.R860Q 0.07 tolerated(0.62) benign(0.016) TCGA-EE-A3JD-06 2 136409484 136409484 C T R3HDM1 Missense_Mutation p.P602L 0.11 tolerated(0.09) benign(0.007) TCGA-EE-A3JD-06 2 137814029 137814029 G A THSD7B Missense_Mutation p.G60E 0.08 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JD-06 2 138000129 138000129 G A THSD7B Silent p.R751R 0.12 TCGA-EE-A3JD-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.12 deleterious(0.02) unknown(0) TCGA-EE-A3JD-06 2 141473590 141473590 G A LRP1B Missense_Mutation p.S1992F 0.10 possibly_damaging(0.788) TCGA-EE-A3JD-06 2 141526904 141526904 G A LRP1B Missense_Mutation p.S1879L 0.08 benign(0.307) TCGA-EE-A3JD-06 2 141773430 141773430 C T LRP1B Silent p.R675R 0.06 TCGA-EE-A3JD-06 2 143718222 143718222 C T KYNU Silent p.I204I 0.14 TCGA-EE-A3JD-06 2 149240999 149240999 G A MBD5 Missense_Mutation p.G947R 0.08 tolerated(0.05) unknown(0) TCGA-EE-A3JD-06 2 149520342 149520342 C T EPC2 Missense_Mutation p.H307Y 0.09 tolerated(0.63) benign(0.029) TCGA-EE-A3JD-06 2 1499824 1499824 C T TPO Silent p.S690S 0.12 TCGA-EE-A3JD-06 2 1499825 1499825 C A TPO Missense_Mutation p.L691M 0.09 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A3JD-06 2 1520736 1520736 C T TPO Missense_Mutation p.S867L 0.09 deleterious(0.02) benign(0.014) TCGA-EE-A3JD-06 2 152426609 152426609 C T NEB Missense_Mutation p.E5806K 0.20 benign(0.042) TCGA-EE-A3JD-06 2 152500373 152500373 C T NEB Missense_Mutation p.D2639N 0.06 benign(0.412) TCGA-EE-A3JD-06 2 152522759 152522759 G A NEB Missense_Mutation p.H1626Y 0.07 probably_damaging(0.993) TCGA-EE-A3JD-06 2 152534673 152534673 G C NEB Missense_Mutation p.A1095G 0.12 benign(0.058) TCGA-EE-A3JD-06 2 155099328 155099328 C T GALNT13 Missense_Mutation p.S199L 0.08 deleterious(0.04) benign(0.045) TCGA-EE-A3JD-06 2 160269009 160269009 G A BAZ2B Silent p.I838I 0.10 TCGA-EE-A3JD-06 2 16082322 16082322 G A MYCN Missense_Mutation p.G46R 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 2 162804210 162804210 C T SLC4A10 Silent p.F746F 0.11 TCGA-EE-A3JD-06 2 163361035 163361035 G A KCNH7 Missense_Mutation p.S349L 0.08 tolerated(0.14) benign(0) TCGA-EE-A3JD-06 2 165947271 165947271 C T SCN3A Missense_Mutation p.E1798K 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A3JD-06 2 166179938 166179938 G A SCN2A Silent p.V648V 0.12 TCGA-EE-A3JD-06 2 166246141 166246141 G A SCN2A Missense_Mutation p.G1942E 0.18 tolerated(0.52) benign(0.06) TCGA-EE-A3JD-06 2 1667458 1667458 C T PXDN Missense_Mutation p.D496N 0.10 tolerated(0.09) benign(0.178) TCGA-EE-A3JD-06 2 166896092 166896092 G A SCN1A Silent p.I810I 0.16 TCGA-EE-A3JD-06 2 168105969 168105969 G A XIRP2 Silent p.Q2689Q 0.13 TCGA-EE-A3JD-06 2 169571510 169571510 G A CERS6 Splice_Site p.X204_splice 0.08 TCGA-EE-A3JD-06 2 169626019 169626019 G A CERS6 Splice_Site p.X343_splice 0.09 TCGA-EE-A3JD-06 2 169727952 169727952 C T SPC25 Missense_Mutation p.V222I 0.13 tolerated(0.26) benign(0.007) TCGA-EE-A3JD-06 2 169952209 169952209 C T DHRS9 Missense_Mutation p.P298S 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JD-06 2 170002394 170002394 A G LRP2 Missense_Mutation p.L4284S 0.12 possibly_damaging(0.623) TCGA-EE-A3JD-06 2 171256768 171256768 C T MYO3B Missense_Mutation p.S621F 0.09 deleterious(0.01) benign(0.375) TCGA-EE-A3JD-06 2 17692161 17692161 G A RAD51AP2 Silent p.I1130I 0.09 TCGA-EE-A3JD-06 2 176982111 176982111 G A HOXD10 Missense_Mutation p.G184S 0.17 tolerated(0.62) benign(0.005) TCGA-EE-A3JD-06 2 179430031 179430031 T A TTN Missense_Mutation p.N26943I 0.14 TCGA-EE-A3JD-06 2 179436520 179436520 C T TTN Missense_Mutation p.R24780Q 0.11 TCGA-EE-A3JD-06 2 179453612 179453612 C T TTN Missense_Mutation p.G20947E 0.11 TCGA-EE-A3JD-06 2 179599476 179599476 C T TTN Missense_Mutation p.D5059N 0.07 TCGA-EE-A3JD-06 2 179600503 179600503 G T TTN Missense_Mutation p.F4890L 0.22 TCGA-EE-A3JD-06 2 179604787 179604787 C T TTN Silent p.Q4391Q 0.18 TCGA-EE-A3JD-06 2 179616001 179616001 C T TTN Intron 0.16 TCGA-EE-A3JD-06 2 179701646 179701646 C T CCDC141 Missense_Mutation p.G1434R 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 179720127 179720127 C T CCDC141 Missense_Mutation p.D1003N 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 2 179732789 179732789 G A CCDC141 Silent p.S846S 0.08 TCGA-EE-A3JD-06 2 179989173 179989173 A C SESTD1 Missense_Mutation p.V362G 0.10 deleterious(0) benign(0.197) TCGA-EE-A3JD-06 2 179989174 179989174 C T SESTD1 Missense_Mutation p.V362I 0.10 deleterious(0.02) benign(0.185) TCGA-EE-A3JD-06 2 183606036 183606036 C G DNAJC10 Missense_Mutation p.P382A 0.12 tolerated(0.51) benign(0.004) TCGA-EE-A3JD-06 2 185803390 185803390 C T ZNF804A Silent p.S1089S 0.09 TCGA-EE-A3JD-06 2 186669990 186669990 G A FSIP2 Silent p.L5408L 0.09 TCGA-EE-A3JD-06 2 186670558 186670558 G A FSIP2 Missense_Mutation p.G5598R 0.08 benign(0.342) TCGA-EE-A3JD-06 2 186670982 186670982 G A FSIP2 Missense_Mutation p.R5739Q 0.15 benign(0) TCGA-EE-A3JD-06 2 186697847 186697847 G A FSIP2 Missense_Mutation p.G6962E 0.12 probably_damaging(0.999) TCGA-EE-A3JD-06 2 187541949 187541949 C T ITGAV Missense_Mutation p.P1026L 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 189162225 189162225 C T GULP1 Intron 0.29 TCGA-EE-A3JD-06 2 1893202 1893202 C T MYT1L Missense_Mutation p.M775I 0.10 deleterious(0.02) benign(0.06) TCGA-EE-A3JD-06 2 189852823 189852823 C T COL3A1 Missense_Mutation p.P182L 0.10 unknown(0) TCGA-EE-A3JD-06 2 189918898 189918898 G A COL5A2 Missense_Mutation p.P811L 0.10 unknown(0) TCGA-EE-A3JD-06 2 189918899 189918899 G A COL5A2 Missense_Mutation p.P811S 0.10 unknown(0) TCGA-EE-A3JD-06 2 190924966 190924966 C T MSTN Missense_Mutation p.R190Q 0.11 tolerated(0.08) benign(0.094) TCGA-EE-A3JD-06 2 191301865 191301865 C T MFSD6 Silent p.I370I 0.10 TCGA-EE-A3JD-06 2 192701440 192701440 C T SDPR Missense_Mutation p.E163K 0.14 tolerated(0.06) possibly_damaging(0.789) TCGA-EE-A3JD-06 2 196723370 196723370 T A DNAH7 Missense_Mutation p.K2632I 0.16 tolerated(0.17) benign(0.089) TCGA-EE-A3JD-06 2 196726633 196726633 C T DNAH7 Missense_Mutation p.R2515Q 0.09 deleterious(0.04) possibly_damaging(0.663) TCGA-EE-A3JD-06 2 196746662 196746662 G A DNAH7 Missense_Mutation p.P1940S 0.13 tolerated(0.16) benign(0.126) TCGA-EE-A3JD-06 2 196749422 196749422 G A DNAH7 Nonsense_Mutation p.R1884* 0.07 TCGA-EE-A3JD-06 2 196799344 196799344 C T DNAH7 Missense_Mutation p.E1148K 0.09 deleterious(0) probably_damaging(0.973) TCGA-EE-A3JD-06 2 197183364 197183364 G A HECW2 Silent p.A750A 0.13 TCGA-EE-A3JD-06 2 201725926 201725926 A G CLK1 Intron 0.12 TCGA-EE-A3JD-06 2 202900182 202900182 C T FZD7 Missense_Mutation p.T271I 0.05 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A3JD-06 2 202900183 202900183 C T FZD7 Silent p.T271T 0.05 TCGA-EE-A3JD-06 2 207827177 207827177 G A CPO Missense_Mutation p.G206R 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 209190148 209190148 C T PIKFYVE Silent p.S871S 0.08 TCGA-EE-A3JD-06 2 209190193 209190193 C T PIKFYVE Silent p.N886N 0.09 TCGA-EE-A3JD-06 2 211438075 211438075 C T CPS1 Silent p.S66S 0.08 TCGA-EE-A3JD-06 2 211542647 211542647 C T CPS1 Missense_Mutation p.R1487C 0.05 tolerated(0.17) possibly_damaging(0.711) TCGA-EE-A3JD-06 2 21225596 21225596 G A APOB Missense_Mutation p.S4233L 0.10 benign(0.001) TCGA-EE-A3JD-06 2 21230629 21230629 A T APOB Silent p.L3037L 0.16 TCGA-EE-A3JD-06 2 212488710 212488710 C T ERBB4 Silent p.L713L 0.11 TCGA-EE-A3JD-06 2 214012511 214012511 C T IKZF2 Silent p.R20R 0.09 TCGA-EE-A3JD-06 2 215815728 215815728 T C ABCA12 Missense_Mutation p.R2243G 0.07 deleterious(0) probably_damaging(0.971) TCGA-EE-A3JD-06 2 218683409 218683409 C T TNS1 Missense_Mutation p.E1112K 0.05 deleterious(0.04) benign(0.04) TCGA-EE-A3JD-06 2 219000424 219000424 G A CXCR2 Silent p.E300E 0.09 TCGA-EE-A3JD-06 2 219603768 219603768 C T TTLL4 Missense_Mutation p.P457S 0.08 tolerated(0.32) benign(0.002) TCGA-EE-A3JD-06 2 219676954 219676954 C T CYP27A1 Silent p.H152H 0.07 TCGA-EE-A3JD-06 2 219886646 219886646 C T CCDC108 Missense_Mutation p.E996K 0.09 tolerated(0.58) benign(0.036) TCGA-EE-A3JD-06 2 220088624 220088624 C T ATG9A Silent p.R462R 0.08 TCGA-EE-A3JD-06 2 220088625 220088625 C T ATG9A Missense_Mutation p.R462Q 0.07 deleterious(0) possibly_damaging(0.782) TCGA-EE-A3JD-06 2 226446848 226446848 G A NYAP2 Missense_Mutation p.E239K 0.10 tolerated(0.1) benign(0.102) TCGA-EE-A3JD-06 2 228004921 228004921 T C COL4A4 Missense_Mutation p.R50G 0.07 probably_damaging(0.941) TCGA-EE-A3JD-06 2 228169719 228169719 G A COL4A3 Missense_Mutation p.G1391D 0.15 unknown(0) TCGA-EE-A3JD-06 2 228497816 228497816 C T C2orf83 5'UTR 0.09 TCGA-EE-A3JD-06 2 228846423 228846423 G A SPHKAP 3'UTR 0.17 TCGA-EE-A3JD-06 2 228886431 228886431 C T SPHKAP Silent p.R231R 0.08 TCGA-EE-A3JD-06 2 232321448 232321448 G A NCL Silent p.F533F 0.12 TCGA-EE-A3JD-06 2 233274432 233274432 C T ALPPL2 Silent p.F483F 0.12 TCGA-EE-A3JD-06 2 233349582 233349582 C T ECEL1 Missense_Mutation p.D330N 0.07 deleterious(0.02) benign(0.37) TCGA-EE-A3JD-06 2 234173762 234173762 T C ATG16L1 Missense_Mutation p.L205P 0.07 deleterious(0) probably_damaging(0.98) TCGA-EE-A3JD-06 2 234526407 234526407 G A UGT1A8 Silent p.L18L 0.13 TCGA-EE-A3JD-06 2 234601598 234601598 G A UGT1A6 5'UTR 0.15 TCGA-EE-A3JD-06 2 238285582 238285582 A G COL6A3 Missense_Mutation p.V968A 0.05 probably_damaging(0.963) TCGA-EE-A3JD-06 2 238287622 238287622 G C COL6A3 Missense_Mutation p.N718K 0.18 probably_damaging(0.968) TCGA-EE-A3JD-06 2 239040037 239040037 G A ESPNL Nonsense_Mutation p.W894* 0.20 TCGA-EE-A3JD-06 2 241973164 241973164 C T SNED1 Nonsense_Mutation p.Q172* 0.08 TCGA-EE-A3JD-06 2 242046056 242046056 C T PASK Silent p.G1306G 0.08 TCGA-EE-A3JD-06 2 242046057 242046057 C T PASK Missense_Mutation p.G1306E 0.08 tolerated_low_confidence(0.19) benign(0.023) TCGA-EE-A3JD-06 2 242054343 242054343 G A PASK Intron 0.08 TCGA-EE-A3JD-06 2 242285599 242285599 C T SEPT2 Silent p.L287L 0.09 TCGA-EE-A3JD-06 2 242312590 242312590 C T FARP2 Missense_Mutation p.P23L 0.11 deleterious(0.03) benign(0.006) TCGA-EE-A3JD-06 2 242644105 242644105 C T ING5 Silent p.F25F 0.10 TCGA-EE-A3JD-06 2 24435576 24435576 G A ITSN2 Silent p.S1344S 0.11 TCGA-EE-A3JD-06 2 25016738 25016738 C T CENPO 5'UTR 0.09 TCGA-EE-A3JD-06 2 25044463 25044463 G A ADCY3 Missense_Mutation p.A1017V 0.04 tolerated(0.66) possibly_damaging(0.748) TCGA-EE-A3JD-06 2 26029103 26029103 A C ASXL2 Missense_Mutation p.L83V 0.11 deleterious(0) probably_damaging(0.967) TCGA-EE-A3JD-06 2 26864126 26864126 C T CIB4 Intron 0.11 TCGA-EE-A3JD-06 2 27353428 27353428 C T ABHD1 Missense_Mutation p.S345F 0.15 tolerated(0.52) benign(0.109) TCGA-EE-A3JD-06 2 27672913 27672913 G A IFT172 Silent p.V1334V 0.12 TCGA-EE-A3JD-06 2 27804462 27804462 C T C2orf16 Nonsense_Mutation p.Q1675* 0.06 TCGA-EE-A3JD-06 2 28843760 28843760 T C PLB1 Missense_Mutation p.F1148L 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 2 29295276 29295276 C T C2orf71 Missense_Mutation p.D618N 0.15 deleterious(0) possibly_damaging(0.828) TCGA-EE-A3JD-06 2 29420510 29420510 G A ALK Missense_Mutation p.S1324F 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JD-06 2 31152341 31152341 C T GALNT14 Silent p.R362R 0.20 TCGA-EE-A3JD-06 2 31155017 31155017 G A GALNT14 Silent p.I330I 0.07 TCGA-EE-A3JD-06 2 31215708 31215708 G A GALNT14 Intron 0.05 TCGA-EE-A3JD-06 2 31588338 31588338 G A XDH Silent p.F843F 0.05 TCGA-EE-A3JD-06 2 31598248 31598248 C T XDH Missense_Mutation p.D534N 0.06 tolerated(0.4) benign(0.003) TCGA-EE-A3JD-06 2 31606681 31606681 G A XDH Missense_Mutation p.P276S 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-EE-A3JD-06 2 36704154 36704154 G A CRIM1 Missense_Mutation p.G372S 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A3JD-06 2 37296034 37296034 A G HEATR5B Silent p.L323L 0.08 TCGA-EE-A3JD-06 2 39088773 39088773 C T DHX57 Missense_Mutation p.G260E 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-EE-A3JD-06 2 40342471 40342471 G A SLC8A1 Silent p.S948S 0.12 TCGA-EE-A3JD-06 2 40342472 40342472 G T SLC8A1 Missense_Mutation p.S948Y 0.12 deleterious(0) possibly_damaging(0.571) TCGA-EE-A3JD-06 2 40366817 40366817 C T SLC8A1 Splice_Site p.X757_splice 0.10 TCGA-EE-A3JD-06 2 45778355 45778355 G A SRBD1 Silent p.L528L 0.08 TCGA-EE-A3JD-06 2 47221609 47221609 C T TTC7A Silent p.F319F 0.10 TCGA-EE-A3JD-06 2 54081276 54081276 G A GPR75 Silent p.L206L 0.12 TCGA-EE-A3JD-06 2 55808737 55808737 A T SMEK2 Missense_Mutation p.L444Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 2 56097945 56097945 G A EFEMP1 Silent p.I410I 0.07 TCGA-EE-A3JD-06 2 60687892 60687892 C T BCL11A Missense_Mutation p.G719R 0.10 tolerated(0.1) benign(0.026) TCGA-EE-A3JD-06 2 64208791 64208791 C T VPS54 Missense_Mutation p.E123K 0.09 tolerated(0.83) benign(0.018) TCGA-EE-A3JD-06 2 69002468 69002468 C T ARHGAP25 Silent p.I59I 0.11 TCGA-EE-A3JD-06 2 70486642 70486642 G A PCYOX1 Missense_Mutation p.G88E 0.04 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 2 70922898 70922898 G A ADD2 Silent p.I170I 0.12 TCGA-EE-A3JD-06 2 71044108 71044108 G A CLEC4F Silent p.L135L 0.07 TCGA-EE-A3JD-06 2 71211322 71211322 G A ANKRD53 Intron 0.14 TCGA-EE-A3JD-06 2 71797758 71797758 G A DYSF Missense_Mutation p.E1039K 0.14 deleterious(0) benign(0.127) TCGA-EE-A3JD-06 2 73188340 73188340 G A SFXN5 Missense_Mutation p.P289S 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JD-06 2 73198740 73198740 C T SFXN5 Missense_Mutation p.D234N 0.08 tolerated(0.53) benign(0.016) TCGA-EE-A3JD-06 2 74043916 74043916 C T C2orf78 Missense_Mutation p.P856S 0.08 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JD-06 2 74177718 74177718 C T DGUOK Silent p.I150I 0.06 TCGA-EE-A3JD-06 2 74512931 74512931 C T SLC4A5 Missense_Mutation p.G124R 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 2 74784195 74784195 G A DOK1 Missense_Mutation p.R467K 0.17 tolerated_low_confidence(0.32) benign(0.001) TCGA-EE-A3JD-06 2 74902995 74902995 C T SEMA4F Silent p.F534F 0.13 TCGA-EE-A3JD-06 2 76975898 76975898 C T LRRTM4 Missense_Mutation p.G566S 0.12 tolerated_low_confidence(0.47) benign(0) TCGA-EE-A3JD-06 2 77746658 77746658 C T LRRTM4 Missense_Mutation p.E113K 0.14 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 2 80530936 80530936 G A LRRTM1 Silent p.F3F 0.06 TCGA-EE-A3JD-06 2 85836049 85836049 G A C2orf68 3'UTR 0.08 TCGA-EE-A3JD-06 2 86258545 86258545 C T POLR1A Missense_Mutation p.E1496K 0.10 tolerated(0.46) benign(0.022) TCGA-EE-A3JD-06 2 86355108 86355108 C T PTCD3 Nonsense_Mutation p.Q381* 0.08 TCGA-EE-A3JD-06 2 89265822 89265822 C T IGKV1-6 Missense_Mutation p.D104N 0.06 deleterious(0) possibly_damaging(0.796) TCGA-EE-A3JD-06 2 89309620 89309620 G A IGKV1-9 Silent p.I70I 0.08 TCGA-EE-A3JD-06 2 89417072 89417072 C T IGKV1-17 Missense_Mutation p.G38R 0.22 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A3JD-06 2 89987007 89987007 C T IGKV2D-29 Silent p.F96F 0.05 TCGA-EE-A3JD-06 2 90044309 90044309 C T IGKV2D-24 Missense_Mutation p.S77F 0.07 deleterious(0.02) benign(0.288) TCGA-EE-A3JD-06 2 90248932 90248932 G A IGKV1D-43 Missense_Mutation p.V5M 0.09 deleterious(0.02) possibly_damaging(0.735) TCGA-EE-A3JD-06 2 95497827 95497827 G A ANKRD20A8P RNA 0.09 TCGA-EE-A3JD-06 2 95845936 95845936 C T ZNF2 Nonsense_Mutation p.Q65* 0.08 TCGA-EE-A3JD-06 2 97215090 97215090 G A ARID5A Silent p.E51E 0.08 TCGA-EE-A3JD-06 2 98351858 98351858 C T ZAP70 Missense_Mutation p.L410F 0.04 tolerated(0.14) probably_damaging(0.933) TCGA-EE-A3JD-06 2 98392448 98392448 G A TMEM131 Missense_Mutation p.P1393L 0.11 tolerated_low_confidence(0.2) benign(0.024) TCGA-EE-A3JD-06 2 98392449 98392449 G A TMEM131 Missense_Mutation p.P1393S 0.10 tolerated_low_confidence(0.17) benign(0.024) TCGA-EE-A3JD-06 2 98906990 98906990 G A VWA3B Missense_Mutation p.G1021E 0.08 tolerated(0.42) benign(0.019) TCGA-EE-A3JD-06 3 100084413 100084413 A T TOMM70A Missense_Mutation p.L608I 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.656) TCGA-EE-A3JD-06 3 101399994 101399994 A T RPL24 Silent p.V153V 0.06 TCGA-EE-A3JD-06 3 102175157 102175157 C T ZPLD1 Missense_Mutation p.L166F 0.07 tolerated(0.21) possibly_damaging(0.476) TCGA-EE-A3JD-06 3 10387232 10387232 C T ATP2B2 Missense_Mutation p.E847K 0.07 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JD-06 3 10391803 10391803 C T ATP2B2 Silent p.L799L 0.10 TCGA-EE-A3JD-06 3 105397281 105397281 G A CBLB Missense_Mutation p.P855S 0.13 tolerated_low_confidence(0.86) benign(0.006) TCGA-EE-A3JD-06 3 108072559 108072559 G A HHLA2 Missense_Mutation p.G117E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 108074105 108074105 G A HHLA2 Missense_Mutation p.G188R 0.14 tolerated(0.19) benign(0.106) TCGA-EE-A3JD-06 3 108179190 108179190 C T MYH15 Missense_Mutation p.R650Q 0.14 tolerated(0.16) benign(0.013) TCGA-EE-A3JD-06 3 108474710 108474710 G A RETNLB Missense_Mutation p.S84L 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 108724163 108724163 C T MORC1 Splice_Site p.X590_splice 0.16 TCGA-EE-A3JD-06 3 108776323 108776323 T C MORC1 Missense_Mutation p.T348A 0.15 deleterious(0.02) benign(0.004) TCGA-EE-A3JD-06 3 11059122 11059122 G A SLC6A1 Silent p.G75G 0.08 TCGA-EE-A3JD-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.12 deleterious(0) benign(0.02) TCGA-EE-A3JD-06 3 111604089 111604089 G A PHLDB2 Missense_Mutation p.E389K 0.11 deleterious(0.03) benign(0.06) TCGA-EE-A3JD-06 3 111851963 111851963 C T GCSAM Missense_Mutation p.G2E 0.08 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 3 112546417 112546417 G A CD200R1L Missense_Mutation p.S76F 0.10 tolerated(0.72) benign(0.03) TCGA-EE-A3JD-06 3 113146154 113146154 C T WDR52 Missense_Mutation p.D45N 0.09 tolerated_low_confidence(0.08) benign(0.16) TCGA-EE-A3JD-06 3 113765467 113765467 A G KIAA1407 Missense_Mutation p.I81T 0.10 tolerated(0.14) benign(0.02) TCGA-EE-A3JD-06 3 114069779 114069779 G A ZBTB20 Silent p.S382S 0.08 TCGA-EE-A3JD-06 3 120053861 120053861 A G LRRC58 Missense_Mutation p.V252A 0.10 deleterious(0) possibly_damaging(0.849) TCGA-EE-A3JD-06 3 120449598 120449598 T C RABL3 Missense_Mutation p.Q28R 0.09 deleterious(0.03) benign(0.049) TCGA-EE-A3JD-06 3 120461386 120461386 T C GTF2E1 5'Flank 0.11 TCGA-EE-A3JD-06 3 120976071 120976071 C T STXBP5L Missense_Mutation p.P575S 0.09 tolerated(0.09) benign(0.057) TCGA-EE-A3JD-06 3 121100282 121100282 C T STXBP5L Silent p.F854F 0.08 TCGA-EE-A3JD-06 3 121209031 121209031 G A POLQ Missense_Mutation p.S916F 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A3JD-06 3 121305151 121305151 C T ARGFX Missense_Mutation p.P218S 0.11 deleterious(0.05) possibly_damaging(0.631) TCGA-EE-A3JD-06 3 121613330 121613330 C T SLC15A2 Missense_Mutation p.P3S 0.08 tolerated_low_confidence(0.16) benign(0.001) TCGA-EE-A3JD-06 3 121615313 121615313 G A SLC15A2 Missense_Mutation p.E56K 0.07 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JD-06 3 121980768 121980768 A C CASR Missense_Mutation p.S296R 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 122134328 122134328 G A WDR5B Silent p.S16S 0.07 TCGA-EE-A3JD-06 3 123419581 123419581 C T MYLK Missense_Mutation p.E912K 0.15 deleterious(0.01) benign(0.001) TCGA-EE-A3JD-06 3 123699272 123699272 C T ROPN1 Silent p.K19K 0.15 TCGA-EE-A3JD-06 3 124567376 124567376 G A ITGB5 Missense_Mutation p.R131C 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 124632455 124632455 G C MUC13 Missense_Mutation p.C345W 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 3 126382316 126382316 G A NUP210P1 RNA 0.10 TCGA-EE-A3JD-06 3 126751236 126751236 C T PLXNA1 Silent p.P1746P 0.09 TCGA-EE-A3JD-06 3 127318180 127318180 C T MCM2 Missense_Mutation p.T9I 0.09 tolerated_low_confidence(0.08) benign(0.127) TCGA-EE-A3JD-06 3 127646784 127646784 G A KBTBD12 Nonsense_Mutation p.W416* 0.09 TCGA-EE-A3JD-06 3 127682071 127682071 G A KBTBD12 Missense_Mutation p.R511Q 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 127823693 127823693 G A RUVBL1 Missense_Mutation p.P146S 0.11 tolerated(0.08) benign(0.038) TCGA-EE-A3JD-06 3 133666116 133666116 C T SLCO2A1 Missense_Mutation p.E427K 0.13 deleterious(0.04) possibly_damaging(0.72) TCGA-EE-A3JD-06 3 136196179 136196179 G A STAG1 Silent p.F326F 0.07 TCGA-EE-A3JD-06 3 137483759 137483759 G A SOX14 Missense_Mutation p.E45K 0.20 deleterious(0) probably_damaging(0.968) TCGA-EE-A3JD-06 3 138183326 138183326 A G ESYT3 Missense_Mutation p.N352S 0.06 tolerated(0.36) benign(0.068) TCGA-EE-A3JD-06 3 138189866 138189866 C T ESYT3 Missense_Mutation p.R580W 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 3 139236477 139236477 C T RBP1 Missense_Mutation p.V196M 0.11 deleterious(0.01) possibly_damaging(0.875) TCGA-EE-A3JD-06 3 140401429 140401429 C T TRIM42 Missense_Mutation p.S156L 0.06 deleterious(0) possibly_damaging(0.835) TCGA-EE-A3JD-06 3 141290290 141290290 C T RASA2 Nonsense_Mutation p.R355* 0.09 TCGA-EE-A3JD-06 3 142031486 142031486 G A XRN1 Missense_Mutation p.A1591V 0.09 tolerated_low_confidence(0.08) benign(0.003) TCGA-EE-A3JD-06 3 142281277 142281277 C T ATR Missense_Mutation p.E323K 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.566) TCGA-EE-A3JD-06 3 142509896 142509896 G A TRPC1 Missense_Mutation p.E445K 0.14 tolerated(0.83) benign(0.111) TCGA-EE-A3JD-06 3 142537117 142537117 G A PCOLCE2 3'UTR 0.11 TCGA-EE-A3JD-06 3 143567110 143567110 G A SLC9A9 Nonsense_Mutation p.Q19* 0.08 TCGA-EE-A3JD-06 3 14755604 14755604 C T C3orf20 Silent p.F417F 0.09 TCGA-EE-A3JD-06 3 14756823 14756823 G A C3orf20 Silent p.E447E 0.09 TCGA-EE-A3JD-06 3 14802994 14802994 G A C3orf20 Silent p.G789G 0.08 TCGA-EE-A3JD-06 3 150916441 150916441 G A GPR171 Missense_Mutation p.P245S 0.10 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JD-06 3 151017900 151017900 G A GPR87 5'UTR 0.09 TCGA-EE-A3JD-06 3 153993991 153993991 G C DHX36 Missense_Mutation p.P999R 0.07 tolerated_low_confidence(0.43) benign(0.02) TCGA-EE-A3JD-06 3 154055817 154055817 C T GPR149 Missense_Mutation p.E623K 0.09 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 3 157920883 157920883 C T RSRC1 Missense_Mutation p.R115C 0.13 deleterious_low_confidence(0.05) unknown(0) TCGA-EE-A3JD-06 3 158371243 158371243 C A GFM1 Missense_Mutation p.L329I 0.11 tolerated(0.43) benign(0.004) TCGA-EE-A3JD-06 3 158787194 158787194 C T IQCJ 5'UTR 0.10 TCGA-EE-A3JD-06 3 159707982 159707982 C T IL12A Silent p.L49L 0.10 TCGA-EE-A3JD-06 3 159713357 159713357 C T IL12A 3'UTR 0.09 TCGA-EE-A3JD-06 3 161147377 161147377 C T RP11-3P17.5 RNA 0.10 TCGA-EE-A3JD-06 3 161216977 161216977 G A OTOL1 Missense_Mutation p.G128E 0.21 deleterious(0) unknown(0) TCGA-EE-A3JD-06 3 16242265 16242265 G A GALNT15 Missense_Mutation p.M282I 0.08 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 3 16252628 16252628 C T GALNT15 Intron 0.09 TCGA-EE-A3JD-06 3 164776837 164776837 C T SI Missense_Mutation p.G438R 0.10 deleterious(0.04) possibly_damaging(0.543) TCGA-EE-A3JD-06 3 164906683 164906683 G A SLITRK3 Missense_Mutation p.P646S 0.09 tolerated(0.22) benign(0.005) TCGA-EE-A3JD-06 3 167319987 167319987 G A WDR49 Silent p.G60G 0.12 TCGA-EE-A3JD-06 3 167506915 167506915 A T SERPINI1 5'UTR 0.15 TCGA-EE-A3JD-06 3 168849266 168849266 G A MECOM Silent p.F64F 0.12 TCGA-EE-A3JD-06 3 169572712 169572712 C T LRRC31 Missense_Mutation p.D294N 0.10 tolerated(0.11) benign(0.063) TCGA-EE-A3JD-06 3 169637340 169637340 C T SAMD7 Silent p.I18I 0.07 TCGA-EE-A3JD-06 3 169644815 169644815 C T SAMD7 Silent p.L255L 0.06 TCGA-EE-A3JD-06 3 169644954 169644954 C T SAMD7 Nonsense_Mutation p.R302* 0.09 TCGA-EE-A3JD-06 3 17051844 17051844 C T PLCL2 Missense_Mutation p.H210Y 0.25 tolerated(0.34) possibly_damaging(0.507) TCGA-EE-A3JD-06 3 172013287 172013287 A G FNDC3B Silent p.K328K 0.13 TCGA-EE-A3JD-06 3 178942523 178942523 G A PIK3CA Missense_Mutation p.R777K 0.11 tolerated(0.39) benign(0.06) TCGA-EE-A3JD-06 3 179137190 179137190 G A GNB4 Missense_Mutation p.S67F 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 3 179341758 179341758 C T NDUFB5 Missense_Mutation p.P167L 0.07 deleterious(0) possibly_damaging(0.665) TCGA-EE-A3JD-06 3 179460024 179460024 C T USP13 Missense_Mutation p.R474C 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 3 183707070 183707070 G A ABCC5 Silent p.P77P 0.11 TCGA-EE-A3JD-06 3 183823664 183823664 C T HTR3E Missense_Mutation p.R304C 0.11 tolerated(0.07) possibly_damaging(0.808) TCGA-EE-A3JD-06 3 185404970 185404970 G A IGF2BP2 Silent p.I229I 0.07 TCGA-EE-A3JD-06 3 185431166 185431166 T G C3orf65 5'UTR 0.14 TCGA-EE-A3JD-06 3 186338483 186338483 C T AHSG Missense_Mutation p.P290S 0.09 tolerated(0.46) benign(0.012) TCGA-EE-A3JD-06 3 189586422 189586422 G A TP63 Missense_Mutation p.G349E 0.12 deleterious(0) possibly_damaging(0.863) TCGA-EE-A3JD-06 3 189691750 189691750 G A LEPREL1 Missense_Mutation p.P499L 0.10 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 3 190167526 190167526 G A TMEM207 Nonsense_Mutation p.Q25* 0.09 TCGA-EE-A3JD-06 3 193132441 193132441 G A ATP13A4 Missense_Mutation p.L981F 0.07 tolerated(1) benign(0.008) TCGA-EE-A3JD-06 3 195595280 195595280 G A TNK2 Missense_Mutation p.P693L 0.16 deleterious_low_confidence(0.03) benign(0.109) TCGA-EE-A3JD-06 3 195955082 195955082 G A SLC51A Missense_Mutation p.M153I 0.07 tolerated(0.19) benign(0.02) TCGA-EE-A3JD-06 3 25637940 25637940 G A RARB Missense_Mutation p.E394K 0.11 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JD-06 3 26751407 26751407 G A LRRC3B Missense_Mutation p.E82K 0.13 tolerated(0.11) benign(0.136) TCGA-EE-A3JD-06 3 35729346 35729346 A T ARPP21 Missense_Mutation p.E126V 0.11 deleterious(0) probably_damaging(0.936) TCGA-EE-A3JD-06 3 36547238 36547238 G A STAC Missense_Mutation p.G278R 0.15 tolerated(0.52) benign(0.19) TCGA-EE-A3JD-06 3 36547239 36547239 G T STAC Missense_Mutation p.G278V 0.16 tolerated(0.37) benign(0.125) TCGA-EE-A3JD-06 3 36587747 36587747 G A STAC Missense_Mutation p.G392D 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 36779958 36779958 C T DCLK3 Missense_Mutation p.E65K 0.08 deleterious(0.01) benign(0.091) TCGA-EE-A3JD-06 3 36780226 36780226 C T DCLK3 5'UTR 0.11 TCGA-EE-A3JD-06 3 36874065 36874065 A T TRANK1 Missense_Mutation p.F2293I 0.11 deleterious(0.01) possibly_damaging(0.806) TCGA-EE-A3JD-06 3 36874242 36874242 G A TRANK1 Missense_Mutation p.H2234Y 0.14 deleterious(0.01) benign(0.157) TCGA-EE-A3JD-06 3 36898331 36898331 G A TRANK1 Missense_Mutation p.A917V 0.11 deleterious(0) probably_damaging(0.947) TCGA-EE-A3JD-06 3 36899249 36899249 C T TRANK1 Missense_Mutation p.R611K 0.06 tolerated(1) benign(0.002) TCGA-EE-A3JD-06 3 38523757 38523757 C T ACVR2B Silent p.F381F 0.13 TCGA-EE-A3JD-06 3 38627372 38627372 G A SCN5A Missense_Mutation p.S866L 0.11 tolerated(0.09) benign(0.163) TCGA-EE-A3JD-06 3 38639247 38639247 G A SCN5A Silent p.F745F 0.08 TCGA-EE-A3JD-06 3 38671833 38671833 G A SCN5A Missense_Mutation p.R121W 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 3 38752383 38752383 G A SCN10A Silent p.T1365T 0.19 TCGA-EE-A3JD-06 3 38770288 38770288 G A SCN10A Silent p.A795A 0.08 TCGA-EE-A3JD-06 3 38770289 38770289 G A SCN10A Missense_Mutation p.A795V 0.08 deleterious(0.03) possibly_damaging(0.512) TCGA-EE-A3JD-06 3 38793909 38793909 C T SCN10A Missense_Mutation p.G519E 0.13 tolerated(0.61) benign(0.118) TCGA-EE-A3JD-06 3 3887537 3887537 A G LRRN1 Silent p.E404E 0.11 TCGA-EE-A3JD-06 3 38912193 38912193 C T SCN11A Missense_Mutation p.D1268N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 38946702 38946702 G A SCN11A Silent p.I528I 0.09 TCGA-EE-A3JD-06 3 38949510 38949510 G A SCN11A Missense_Mutation p.S468F 0.09 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JD-06 3 38950548 38950548 C T SCN11A Silent p.E413E 0.13 TCGA-EE-A3JD-06 3 38962605 38962605 G A SCN11A Missense_Mutation p.S285L 0.07 tolerated(0.6) benign(0.002) TCGA-EE-A3JD-06 3 39226748 39226748 G A XIRP1 Missense_Mutation p.P1397S 0.11 tolerated_low_confidence(0.09) benign(0.005) TCGA-EE-A3JD-06 3 40231452 40231452 C T MYRIP Missense_Mutation p.S388F 0.14 deleterious(0.01) benign(0.16) TCGA-EE-A3JD-06 3 42264536 42264536 C T TRAK1 Silent p.S723S 0.08 TCGA-EE-A3JD-06 3 42916461 42916461 G T CYP8B1 Missense_Mutation p.S283Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 3 42916897 42916897 C T CYP8B1 Missense_Mutation p.D138N 0.11 tolerated(0.52) possibly_damaging(0.815) TCGA-EE-A3JD-06 3 43121648 43121648 G A POMGNT2 Silent p.L426L 0.20 TCGA-EE-A3JD-06 3 44490126 44490126 G A ZNF445 Missense_Mutation p.S346F 0.16 tolerated(0.17) possibly_damaging(0.485) TCGA-EE-A3JD-06 3 44598665 44598665 C T ZKSCAN7 Silent p.L42L 0.17 TCGA-EE-A3JD-06 3 44612899 44612899 C T ZKSCAN7 3'UTR 0.06 TCGA-EE-A3JD-06 3 44762533 44762533 C T ZNF502 Missense_Mutation p.S75L 0.09 tolerated(0.26) benign(0.006) TCGA-EE-A3JD-06 3 44932131 44932131 C T TGM4 Silent p.L113L 0.08 TCGA-EE-A3JD-06 3 46245421 46245421 C T CCR1 Silent p.T128T 0.16 TCGA-EE-A3JD-06 3 46399709 46399709 C T CCR2 Missense_Mutation p.R231W 0.11 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JD-06 3 46450225 46450225 C T CCRL2 Missense_Mutation p.L231F 0.13 deleterious(0) benign(0.318) TCGA-EE-A3JD-06 3 4703814 4703814 C T ITPR1 Missense_Mutation p.P419S 0.11 tolerated(0.9) probably_damaging(0.998) TCGA-EE-A3JD-06 3 47147570 47147570 G A SETD2 Missense_Mutation p.H1586Y 0.14 tolerated(0.06) probably_damaging(0.996) TCGA-EE-A3JD-06 3 47284733 47284733 G A KIF9 Missense_Mutation p.S506F 0.11 deleterious(0.02) benign(0.238) TCGA-EE-A3JD-06 3 4810403 4810403 C T ITPR1 Silent p.L1963L 0.13 TCGA-EE-A3JD-06 3 48310173 48310173 C T ZNF589 Missense_Mutation p.S331L 0.08 deleterious(0.03) possibly_damaging(0.582) TCGA-EE-A3JD-06 3 48617232 48617232 C T COL7A1 Missense_Mutation p.G1714R 0.14 unknown(0) TCGA-EE-A3JD-06 3 48629120 48629120 G A COL7A1 Missense_Mutation p.T498I 0.14 unknown(0) TCGA-EE-A3JD-06 3 49049407 49049407 G A WDR6 Missense_Mutation p.C177Y 0.12 deleterious(0.04) benign(0.169) TCGA-EE-A3JD-06 3 49201459 49201459 T G CCDC71 Missense_Mutation p.Q61H 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 3 49323748 49323748 C T USP4 Silent p.E661E 0.08 TCGA-EE-A3JD-06 3 49339953 49339953 G A USP4 Missense_Mutation p.P384L 0.12 deleterious(0) probably_damaging(0.953) TCGA-EE-A3JD-06 3 49662469 49662469 C T BSN Missense_Mutation p.P96S 0.10 unknown(0) TCGA-EE-A3JD-06 3 49691340 49691340 G A BSN Missense_Mutation p.E1451K 0.11 unknown(0) TCGA-EE-A3JD-06 3 49718605 49718605 C T APEH Silent p.P457P 0.10 TCGA-EE-A3JD-06 3 5025282 5025282 C T BHLHE40 Missense_Mutation p.P382S 0.07 tolerated(0.36) benign(0.041) TCGA-EE-A3JD-06 3 50324659 50324659 G A LSMEM2 3'UTR 0.14 TCGA-EE-A3JD-06 3 50363575 50363575 G A TUSC2 Missense_Mutation p.P104S 0.33 deleterious(0) benign(0.021) TCGA-EE-A3JD-06 3 50391078 50391078 C T CYB561D2 Missense_Mutation p.A191V 0.11 tolerated(0.5) benign(0) TCGA-EE-A3JD-06 3 51378816 51378816 G A DOCK3 Silent p.K1305K 0.09 TCGA-EE-A3JD-06 3 51387802 51387802 G A DOCK3 Silent p.R1362R 0.11 TCGA-EE-A3JD-06 3 51393609 51393609 C T DOCK3 Missense_Mutation p.R1447C 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 3 51749584 51749584 A G GRM2 Missense_Mutation p.K599E 0.09 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 3 52469918 52469918 G A SEMA3G Missense_Mutation p.P684S 0.08 tolerated(0.91) benign(0.004) TCGA-EE-A3JD-06 3 52485521 52485521 G A TNNC1 Silent p.L114L 0.07 TCGA-EE-A3JD-06 3 52541961 52541961 G A STAB1 Silent p.K689K 0.06 TCGA-EE-A3JD-06 3 52551896 52551896 G A STAB1 Splice_Site p.X1547_splice 0.06 TCGA-EE-A3JD-06 3 52817097 52817097 T C ITIH1 Missense_Mutation p.L352P 0.07 deleterious(0.01) benign(0.25) TCGA-EE-A3JD-06 3 52821064 52821064 G A ITIH1 Missense_Mutation p.G613S 0.11 deleterious(0.03) possibly_damaging(0.905) TCGA-EE-A3JD-06 3 52842763 52842763 G A ITIH3 3'UTR 0.10 TCGA-EE-A3JD-06 3 52941280 52941280 G A SFMBT1 Silent p.S712S 0.08 TCGA-EE-A3JD-06 3 55922538 55922538 C T ERC2 Missense_Mutation p.E815K 0.08 tolerated(0.15) possibly_damaging(0.53) TCGA-EE-A3JD-06 3 56026252 56026252 C T ERC2 Silent p.R696R 0.07 TCGA-EE-A3JD-06 3 56468631 56468631 G A ERC2 Silent p.V135V 0.09 TCGA-EE-A3JD-06 3 57132020 57132020 G A IL17RD Missense_Mutation p.P571S 0.11 tolerated_low_confidence(0.59) benign(0.003) TCGA-EE-A3JD-06 3 57144329 57144329 G A IL17RD Silent p.F107F 0.17 TCGA-EE-A3JD-06 3 58186759 58186759 C T DNASE1L3 Missense_Mutation p.V171I 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 3 62357301 62357301 G A FEZF2 Silent p.V298V 0.09 TCGA-EE-A3JD-06 3 64619151 64619151 G A ADAMTS9 Silent p.C724C 0.10 TCGA-EE-A3JD-06 3 68466432 68466432 G A FAM19A1 Missense_Mutation p.G41R 0.12 tolerated(0.07) probably_damaging(1) TCGA-EE-A3JD-06 3 88040497 88040497 C T HTR1F Missense_Mutation p.L200F 0.12 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 3 89259218 89259218 A G EPHA3 Missense_Mutation p.N121S 0.07 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JD-06 3 89259262 89259262 C T EPHA3 Nonsense_Mutation p.R136* 0.08 TCGA-EE-A3JD-06 3 9412785 9412785 C A THUMPD3 Silent p.L124L 0.10 TCGA-EE-A3JD-06 3 97439158 97439158 A T EPHA6 Missense_Mutation p.K946N 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JD-06 3 9754728 9754728 C T CPNE9 Silent p.I205I 0.08 TCGA-EE-A3JD-06 3 9784840 9784840 C T BRPF1 Silent p.A738A 0.08 TCGA-EE-A3JD-06 3 9789031 9789031 T C BRPF1 Nonstop_Mutation p.*1221Rext*9 0.10 TCGA-EE-A3JD-06 3 97983223 97983223 G A OR5H6 Missense_Mutation p.G32E 0.08 deleterious(0) probably_damaging(0.962) TCGA-EE-A3JD-06 3 98188459 98188459 C T OR5K1 Silent p.I13I 0.07 TCGA-EE-A3JD-06 3 99513754 99513754 G A COL8A1 Missense_Mutation p.G337R 0.19 deleterious(0) unknown(0) TCGA-EE-A3JD-06 4 100232789 100232789 C T ADH1B Missense_Mutation p.E285K 0.07 tolerated(1) benign(0.004) TCGA-EE-A3JD-06 4 100239257 100239257 C T ADH1B Missense_Mutation p.E69K 0.04 deleterious(0) benign(0.132) TCGA-EE-A3JD-06 4 100257891 100257891 G A ADH1C 3'UTR 0.08 TCGA-EE-A3JD-06 4 100434218 100434218 G A C4orf17 5'UTR 0.09 TCGA-EE-A3JD-06 4 100470360 100470360 G A TRMT10A Missense_Mutation p.S302L 0.09 tolerated(0.37) benign(0) TCGA-EE-A3JD-06 4 103870452 103870452 A T SLC9B1 Missense_Mutation p.I115N 0.05 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 4 104080213 104080213 T A CENPE Missense_Mutation p.K852I 0.11 possibly_damaging(0.494) TCGA-EE-A3JD-06 4 104510816 104510816 A G TACR3 3'UTR 0.09 TCGA-EE-A3JD-06 4 110745161 110745161 C T GAR1 Silent p.F204F 0.06 TCGA-EE-A3JD-06 4 115751004 115751004 C T NDST4 Missense_Mutation p.G814E 0.08 deleterious(0.02) benign(0.327) TCGA-EE-A3JD-06 4 115997280 115997280 G A NDST4 Missense_Mutation p.L305F 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JD-06 4 119026233 119026233 G A NDST3 Missense_Mutation p.G348R 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 4 119951218 119951218 G A SYNPO2 Missense_Mutation p.E430K 0.05 tolerated(0.17) possibly_damaging(0.678) TCGA-EE-A3JD-06 4 126370525 126370525 C T FAT4 Missense_Mutation p.S2785F 0.06 benign(0.023) TCGA-EE-A3JD-06 4 126370866 126370866 C T FAT4 Missense_Mutation p.P2899S 0.06 benign(0.26) TCGA-EE-A3JD-06 4 126372585 126372585 A G FAT4 Missense_Mutation p.T3472A 0.09 benign(0.019) TCGA-EE-A3JD-06 4 128577864 128577864 T G INTU Silent p.P252P 0.06 TCGA-EE-A3JD-06 4 128632252 128632252 G A INTU Missense_Mutation p.E852K 0.11 tolerated(0.82) benign(0.001) TCGA-EE-A3JD-06 4 138442555 138442555 G A PCDH18 Silent p.F1012F 0.11 TCGA-EE-A3JD-06 4 138449716 138449716 C T PCDH18 Missense_Mutation p.D886N 0.06 deleterious(0) possibly_damaging(0.65) TCGA-EE-A3JD-06 4 148744081 148744081 G A ARHGAP10 Silent p.K95K 0.07 TCGA-EE-A3JD-06 4 152096067 152096067 G A SH3D19 Missense_Mutation p.S150F 0.06 tolerated(0.42) benign(0.432) TCGA-EE-A3JD-06 4 153864362 153864362 G C FHDC1 Missense_Mutation p.R51S 0.14 tolerated(0.69) benign(0.001) TCGA-EE-A3JD-06 4 154649469 154649469 C T RNF175 Silent p.T97T 0.06 TCGA-EE-A3JD-06 4 155252751 155252751 G A DCHS2 Silent p.F783F 0.11 TCGA-EE-A3JD-06 4 15539574 15539574 A T CC2D2A Missense_Mutation p.E606V 0.20 tolerated(0.06) benign(0.012) TCGA-EE-A3JD-06 4 156294426 156294426 C T MAP9 Missense_Mutation p.E115K 0.09 tolerated(0.17) benign(0.026) TCGA-EE-A3JD-06 4 156618006 156618006 G A GUCY1A3 5'UTR 0.10 TCGA-EE-A3JD-06 4 158057740 158057740 G A GLRB Nonsense_Mutation p.W139* 0.09 TCGA-EE-A3JD-06 4 169201578 169201578 G A DDX60 Missense_Mutation p.S629F 0.09 deleterious(0) possibly_damaging(0.56) TCGA-EE-A3JD-06 4 172735764 172735764 G A GALNTL6 Missense_Mutation p.M11I 0.07 tolerated(0.39) benign(0.005) TCGA-EE-A3JD-06 4 183245366 183245366 G A TENM3 Missense_Mutation p.D65N 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.822) TCGA-EE-A3JD-06 4 183652216 183652216 C T TENM3 Missense_Mutation p.P964L 0.14 deleterious(0) possibly_damaging(0.908) TCGA-EE-A3JD-06 4 184587497 184587497 G A TRAPPC11 Missense_Mutation p.V98I 0.06 tolerated(0.08) benign(0.097) TCGA-EE-A3JD-06 4 184931192 184931192 G A STOX2 Missense_Mutation p.D401N 0.18 tolerated(0.12) benign(0.071) TCGA-EE-A3JD-06 4 186545077 186545077 C T SORBS2 Silent p.T598T 0.06 TCGA-EE-A3JD-06 4 187201273 187201273 C A F11 Missense_Mutation p.P288Q 0.10 deleterious(0.03) probably_damaging(0.981) TCGA-EE-A3JD-06 4 187539302 187539302 G A FAT1 Missense_Mutation p.P2813L 0.06 possibly_damaging(0.574) TCGA-EE-A3JD-06 4 188924697 188924697 C T ZFP42 Missense_Mutation p.R246W 0.12 deleterious(0) possibly_damaging(0.474) TCGA-EE-A3JD-06 4 189068217 189068217 G A TRIML1 Silent p.G366G 0.06 TCGA-EE-A3JD-06 4 20569216 20569216 G A SLIT2 Missense_Mutation p.E976K 0.09 tolerated(0.06) benign(0.364) TCGA-EE-A3JD-06 4 22389748 22389748 G A GPR125 Silent p.S1182S 0.10 TCGA-EE-A3JD-06 4 22749192 22749192 G A GBA3 Missense_Mutation p.G187E 0.07 deleterious(0.01) probably_damaging(0.941) TCGA-EE-A3JD-06 4 25019676 25019676 G A LGI2 Missense_Mutation p.P197L 0.07 deleterious(0) possibly_damaging(0.886) TCGA-EE-A3JD-06 4 36093627 36093627 C T ARAP2 Missense_Mutation p.G1434E 0.07 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 4 37846083 37846083 T C PGM2 Missense_Mutation p.V273A 0.06 tolerated(0.66) benign(0.001) TCGA-EE-A3JD-06 4 38091654 38091654 C T TBC1D1 Missense_Mutation p.R718C 0.13 deleterious(0.02) benign(0.028) TCGA-EE-A3JD-06 4 40440154 40440154 G A RBM47 Missense_Mutation p.L253F 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3JD-06 4 42145696 42145696 G A BEND4 Missense_Mutation p.S268L 0.08 tolerated_low_confidence(0.12) possibly_damaging(0.885) TCGA-EE-A3JD-06 4 46043129 46043129 C T GABRG1 Missense_Mutation p.G425E 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JD-06 4 46930238 46930238 G A GABRA4 3'UTR 0.08 TCGA-EE-A3JD-06 4 47593304 47593304 G A ATP10D Missense_Mutation p.G1396E 0.06 tolerated_low_confidence(0.33) benign(0.009) TCGA-EE-A3JD-06 4 52861651 52861651 G A LRRC66 Missense_Mutation p.P513S 0.06 tolerated(0.12) benign(0.245) TCGA-EE-A3JD-06 4 56759717 56759717 G A EXOC1 Splice_Site p.X575_splice 0.11 TCGA-EE-A3JD-06 4 6086614 6086614 C T JAKMIP1 Missense_Mutation p.E305K 0.07 deleterious(0.01) possibly_damaging(0.883) TCGA-EE-A3JD-06 4 65165729 65165729 C T TECRL Missense_Mutation p.G246E 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 4 65175614 65175614 C T TECRL Missense_Mutation p.R196Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 4 68441139 68441139 C T STAP1 Missense_Mutation p.L77F 0.07 tolerated(0.09) benign(0.382) TCGA-EE-A3JD-06 4 68459033 68459033 G A STAP1 Missense_Mutation p.G262E 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3JD-06 4 69683744 69683744 C T UGT2B10 Intron 0.13 TCGA-EE-A3JD-06 4 69692167 69692167 G A UGT2B10 Missense_Mutation p.G347S 0.10 deleterious(0.03) possibly_damaging(0.503) TCGA-EE-A3JD-06 4 69796888 69796888 G - UGT2A3 Frame_Shift_Del p.Q357Rfs*19 0.09 TCGA-EE-A3JD-06 4 70079874 70079874 G A UGT2B11 Silent p.F189F 0.09 TCGA-EE-A3JD-06 4 70148320 70148320 C T UGT2B28 Silent p.F270F 0.07 TCGA-EE-A3JD-06 4 71232511 71232511 C T SMR3A Missense_Mutation p.P69S 0.10 tolerated_low_confidence(0.1) unknown(0) TCGA-EE-A3JD-06 4 71255736 71255736 A G SMR3B 3'UTR 0.14 TCGA-EE-A3JD-06 4 71275788 71275788 G A PROL1 Missense_Mutation p.G248D 0.16 tolerated_low_confidence(0.51) unknown(0) TCGA-EE-A3JD-06 4 71472088 71472088 C T AMBN Missense_Mutation p.P329S 0.15 deleterious(0.04) possibly_damaging(0.543) TCGA-EE-A3JD-06 4 71501554 71501554 C T ENAM Silent p.F159F 0.05 TCGA-EE-A3JD-06 4 7435454 7435454 G A PSAPL1 Missense_Mutation p.P385S 0.09 tolerated(0.21) benign(0.039) TCGA-EE-A3JD-06 4 75245188 75245188 C T EREG Missense_Mutation p.L31F 0.07 tolerated(0.68) benign(0.01) TCGA-EE-A3JD-06 4 75938171 75938171 G A PARM1 Missense_Mutation p.E194K 0.05 tolerated(0.3) benign(0.012) TCGA-EE-A3JD-06 4 76879080 76879080 T C SDAD1 Missense_Mutation p.T500A 0.09 tolerated(0.89) benign(0.001) TCGA-EE-A3JD-06 4 77057348 77057348 G A NUP54 Silent p.C171C 0.07 TCGA-EE-A3JD-06 4 79301097 79301097 G A FRAS1 Nonsense_Mutation p.W1170* 0.08 TCGA-EE-A3JD-06 4 79856296 79856296 A G PAQR3 Silent p.S109S 0.09 TCGA-EE-A3JD-06 4 81504327 81504327 G A C4orf22 Missense_Mutation p.G108E 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-EE-A3JD-06 4 82031727 82031727 C T PRKG2 Silent p.Q605Q 0.09 TCGA-EE-A3JD-06 4 85555012 85555012 C T CDS1 Silent p.F214F 0.08 TCGA-EE-A3JD-06 4 88535103 88535103 C T DSPP Missense_Mutation p.S430L 0.15 benign(0.12) TCGA-EE-A3JD-06 4 88732864 88732864 G A IBSP Silent p.G252G 0.10 TCGA-EE-A3JD-06 4 88767654 88767654 G A MEPE 3'UTR 0.12 TCGA-EE-A3JD-06 4 88967822 88967822 G A PKD2 Missense_Mutation p.G450S 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 4 95201837 95201837 G A SMARCAD1 Missense_Mutation p.R840Q 0.09 tolerated(0.25) benign(0.002) TCGA-EE-A3JD-06 4 9784543 9784543 C T DRD5 Missense_Mutation p.T297I 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 5 100222291 100222291 G A ST8SIA4 Missense_Mutation p.R87C 0.19 benign(0.232) TCGA-EE-A3JD-06 5 101574973 101574973 G A SLCO4C1 Missense_Mutation p.H666Y 0.09 tolerated(0.97) benign(0.001) TCGA-EE-A3JD-06 5 101631927 101631927 G A SLCO4C1 Missense_Mutation p.P14S 0.14 tolerated(0.07) benign(0.016) TCGA-EE-A3JD-06 5 102469213 102469213 C T PPIP5K2 Silent p.S57S 0.07 TCGA-EE-A3JD-06 5 110809049 110809049 G A CAMK4 Silent p.V222V 0.11 TCGA-EE-A3JD-06 5 111540173 111540173 A G EPB41L4A Silent p.N425N 0.07 TCGA-EE-A3JD-06 5 111576445 111576445 C T EPB41L4A Silent p.K286K 0.09 TCGA-EE-A3JD-06 5 112327826 112327826 C T DCP2 Missense_Mutation p.H72Y 0.06 deleterious(0) probably_damaging(0.961) TCGA-EE-A3JD-06 5 120022114 120022114 G A PRR16 Missense_Mutation p.E186K 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3JD-06 5 121787121 121787121 C T SNCAIP Missense_Mutation p.P860L 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 5 126161727 126161727 C A LMNB1 Silent p.L513L 0.10 TCGA-EE-A3JD-06 5 134785536 134785536 C T TIFAB Missense_Mutation p.D32N 0.10 tolerated(0.09) benign(0.041) TCGA-EE-A3JD-06 5 137666877 137666877 G A CDC25C 5'UTR 0.09 TCGA-EE-A3JD-06 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.09 TCGA-EE-A3JD-06 5 13788855 13788855 C A DNAH5 Missense_Mutation p.D2873Y 0.10 possibly_damaging(0.861) TCGA-EE-A3JD-06 5 13788856 13788856 C T DNAH5 Silent p.V2872V 0.09 TCGA-EE-A3JD-06 5 13830773 13830773 C T DNAH5 Silent p.G1998G 0.07 TCGA-EE-A3JD-06 5 13871769 13871769 C T DNAH5 Missense_Mutation p.E1168K 0.07 benign(0.292) TCGA-EE-A3JD-06 5 140167623 140167623 G A PCDHA1 Missense_Mutation p.R583Q 0.09 tolerated_low_confidence(0.11) benign(0.186) TCGA-EE-A3JD-06 5 140174807 140174807 G A PCDHA2 Silent p.V86V 0.08 TCGA-EE-A3JD-06 5 140202854 140202854 G A PCDHA5 Silent p.V498V 0.06 TCGA-EE-A3JD-06 5 140203480 140203480 C T PCDHA5 Missense_Mutation p.S707F 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EE-A3JD-06 5 140210016 140210016 T C PCDHA6 Silent p.P780P 0.10 TCGA-EE-A3JD-06 5 140222207 140222207 C T PCDHA8 Missense_Mutation p.S434L 0.08 deleterious_low_confidence(0.05) benign(0.05) TCGA-EE-A3JD-06 5 140222568 140222568 C T PCDHA8 Silent p.F554F 0.07 TCGA-EE-A3JD-06 5 140222697 140222697 G A PCDHA8 Silent p.V597V 0.06 TCGA-EE-A3JD-06 5 140228535 140228535 T A PCDHA9 Missense_Mutation p.F152Y 0.06 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A3JD-06 5 140263050 140263050 C T PCDHA13 Silent p.S399S 0.05 TCGA-EE-A3JD-06 5 140347041 140347041 G A PCDHAC2 Silent p.V230V 0.08 TCGA-EE-A3JD-06 5 140475307 140475307 C T PCDHB2 Silent p.F311F 0.06 TCGA-EE-A3JD-06 5 140475961 140475961 C T PCDHB2 Silent p.F529F 0.09 TCGA-EE-A3JD-06 5 140476711 140476711 G A PCDHB2 Silent p.Q779Q 0.06 TCGA-EE-A3JD-06 5 140480786 140480786 C T PCDHB3 Missense_Mutation p.R185C 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.547) TCGA-EE-A3JD-06 5 140481048 140481048 G A PCDHB3 Missense_Mutation p.G272E 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-EE-A3JD-06 5 140481049 140481049 A G PCDHB3 Silent p.G272G 0.09 TCGA-EE-A3JD-06 5 140516442 140516442 G A PCDHB5 Missense_Mutation p.D476N 0.08 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-EE-A3JD-06 5 140537626 140537626 A T PCDHB17 3'UTR 0.08 TCGA-EE-A3JD-06 5 140537778 140537778 C T PCDHB17 3'UTR 0.06 TCGA-EE-A3JD-06 5 140553242 140553242 G A PCDHB7 Missense_Mutation p.E276K 0.05 tolerated_low_confidence(0.24) benign(0.007) TCGA-EE-A3JD-06 5 140553802 140553802 G A PCDHB7 Silent p.E462E 0.04 TCGA-EE-A3JD-06 5 140589760 140589760 G A PCDHB12 Silent p.G427G 0.15 TCGA-EE-A3JD-06 5 140590232 140590232 C T PCDHB12 Silent p.L585L 0.06 TCGA-EE-A3JD-06 5 140596017 140596017 C T PCDHB13 Silent p.F774F 0.09 TCGA-EE-A3JD-06 5 140626095 140626095 C A PCDHB15 Missense_Mutation p.L317I 0.07 tolerated_low_confidence(0.57) benign(0.002) TCGA-EE-A3JD-06 5 140626638 140626638 C T PCDHB15 Silent p.L498L 0.05 TCGA-EE-A3JD-06 5 140719148 140719148 G A PCDHGA2 Missense_Mutation p.E204K 0.07 tolerated_low_confidence(0.33) benign(0.197) TCGA-EE-A3JD-06 5 140720289 140720289 C T PCDHGA2 Missense_Mutation p.P584L 0.07 deleterious_low_confidence(0.02) benign(0.443) TCGA-EE-A3JD-06 5 140723788 140723788 G A PCDHGA3 Missense_Mutation p.G63E 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EE-A3JD-06 5 140724001 140724001 C T PCDHGA3 Missense_Mutation p.P134L 0.11 tolerated_low_confidence(0.82) benign(0.001) TCGA-EE-A3JD-06 5 140812573 140812573 C T PCDHGA12 Silent p.F749F 0.06 TCGA-EE-A3JD-06 5 14336794 14336794 C T TRIO Silent p.I668I 0.11 TCGA-EE-A3JD-06 5 14497966 14497966 C T TRIO Missense_Mutation p.P2677L 0.06 unknown(0) TCGA-EE-A3JD-06 5 145393509 145393509 C T SH3RF2 Missense_Mutation p.P315L 0.08 deleterious(0) probably_damaging(0.963) TCGA-EE-A3JD-06 5 14711278 14711278 C T ANKH 3'UTR 0.10 TCGA-EE-A3JD-06 5 147695212 147695212 G A SPINK7 Missense_Mutation p.G75R 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 5 147902871 147902871 T C HTR4 Missense_Mutation p.N131S 0.14 tolerated(0.41) benign(0.014) TCGA-EE-A3JD-06 5 149583553 149583553 G A SLC6A7 Silent p.G428G 0.15 TCGA-EE-A3JD-06 5 150715010 150715010 G A SLC36A2 Silent p.F208F 0.07 TCGA-EE-A3JD-06 5 153035405 153035405 C T GRIA1 Silent p.I234I 0.12 TCGA-EE-A3JD-06 5 156381462 156381462 C T TIMD4 Missense_Mutation p.D122N 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 5 156479455 156479455 G A HAVCR1 Missense_Mutation p.P197L 0.05 deleterious(0.01) unknown(0) TCGA-EE-A3JD-06 5 156592713 156592713 G A FAM71B Missense_Mutation p.P156L 0.09 deleterious(0) probably_damaging(0.928) TCGA-EE-A3JD-06 5 157078486 157078486 C T SOX30 Missense_Mutation p.G201S 0.09 tolerated_low_confidence(0.19) benign(0.026) TCGA-EE-A3JD-06 5 160763735 160763735 C T GABRB2 Missense_Mutation p.D195N 0.06 tolerated(0.15) benign(0.001) TCGA-EE-A3JD-06 5 161302643 161302643 G A GABRA1 Missense_Mutation p.G185E 0.12 deleterious(0) benign(0.195) TCGA-EE-A3JD-06 5 167645469 167645469 G A TENM2 Missense_Mutation p.D1525N 0.09 deleterious(0) probably_damaging(0.972) TCGA-EE-A3JD-06 5 168233490 168233490 A T SLIT3 Missense_Mutation p.M299K 0.07 deleterious(0.02) benign(0.021) TCGA-EE-A3JD-06 5 169122867 169122867 G A DOCK2 Missense_Mutation p.V302I 0.08 tolerated(0.39) benign(0.014) TCGA-EE-A3JD-06 5 170239110 170239110 T G GABRP Missense_Mutation p.F391V 0.12 tolerated(0.5) benign(0.005) TCGA-EE-A3JD-06 5 174869338 174869338 T C DRD1 Silent p.Q255Q 0.07 TCGA-EE-A3JD-06 5 175717716 175717716 C T SIMC1 Intron 0.09 TCGA-EE-A3JD-06 5 177020755 177020755 C T TMED9 Silent p.S130S 0.07 TCGA-EE-A3JD-06 5 177547340 177547340 C T N4BP3 Silent p.A164A 0.20 TCGA-EE-A3JD-06 5 178391919 178391919 C T ZNF454 Nonsense_Mutation p.Q172* 0.16 TCGA-EE-A3JD-06 5 178563038 178563038 C T ADAMTS2 Missense_Mutation p.E653K 0.09 tolerated(0.83) benign(0.13) TCGA-EE-A3JD-06 5 179688771 179688771 C T MAPK9 Missense_Mutation p.M121I 0.09 tolerated(0.14) benign(0.091) TCGA-EE-A3JD-06 5 180048900 180048900 G A FLT4 Silent p.I554I 0.11 TCGA-EE-A3JD-06 5 180326250 180326250 C T BTNL8 5'UTR 0.09 TCGA-EE-A3JD-06 5 180424352 180424352 C T BTNL3 Silent p.S179S 0.11 TCGA-EE-A3JD-06 5 23509621 23509621 G A PRDM9 Missense_Mutation p.E38K 0.09 tolerated_low_confidence(0.06) benign(0.13) TCGA-EE-A3JD-06 5 23522420 23522420 G A PRDM9 Silent p.R172R 0.13 TCGA-EE-A3JD-06 5 23527682 23527682 G A PRDM9 Missense_Mutation p.E829K 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-EE-A3JD-06 5 2753450 2753450 C T C5orf38 Missense_Mutation p.P129S 0.07 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 5 31323023 31323023 G A CDH6 Missense_Mutation p.D661N 0.06 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 5 32090919 32090919 G A PDZD2 Silent p.T2455T 0.10 TCGA-EE-A3JD-06 5 32397417 32397417 G A ZFR Missense_Mutation p.R581W 0.09 deleterious(0) unknown(0) TCGA-EE-A3JD-06 5 32712438 32712438 G A NPR3 Missense_Mutation p.E186K 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3JD-06 5 32739085 32739085 C T NPR3 Silent p.S336S 0.09 TCGA-EE-A3JD-06 5 35014170 35014170 C T AGXT2 Missense_Mutation p.D340N 0.12 tolerated(0.09) benign(0.167) TCGA-EE-A3JD-06 5 35065574 35065574 G A PRLR Nonsense_Mutation p.Q496* 0.08 TCGA-EE-A3JD-06 5 35065575 35065575 G A PRLR Silent p.P495P 0.07 TCGA-EE-A3JD-06 5 35065841 35065841 G A PRLR Missense_Mutation p.H407Y 0.09 tolerated(0.54) benign(0.01) TCGA-EE-A3JD-06 5 35072785 35072785 G A PRLR Silent p.P145P 0.11 TCGA-EE-A3JD-06 5 35691242 35691242 C T SPEF2 Missense_Mutation p.S543F 0.06 tolerated(0.06) benign(0.013) TCGA-EE-A3JD-06 5 35857113 35857113 T A IL7R Missense_Mutation p.F12I 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-EE-A3JD-06 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.08 TCGA-EE-A3JD-06 5 36116684 36116684 G A LMBRD2 Silent p.F438F 0.09 TCGA-EE-A3JD-06 5 38448420 38448420 G A EGFLAM Missense_Mutation p.E836K 0.08 tolerated(0.07) benign(0.077) TCGA-EE-A3JD-06 5 38530721 38530721 C T LIFR Missense_Mutation p.R10Q 0.09 tolerated_low_confidence(0.55) benign(0.001) TCGA-EE-A3JD-06 5 40958352 40958352 G A C7 Missense_Mutation p.G493E 0.08 tolerated(0.62) benign(0.029) TCGA-EE-A3JD-06 5 41160458 41160458 G A C6 Silent p.I490I 0.09 TCGA-EE-A3JD-06 5 42695149 42695149 G A GHR Missense_Mutation p.G133S 0.15 tolerated(0.34) probably_damaging(0.999) TCGA-EE-A3JD-06 5 42718559 42718559 G A GHR Missense_Mutation p.G317E 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 5 52240815 52240815 C T ITGA1 Missense_Mutation p.R1110W 0.04 deleterious(0.01) benign(0.339) TCGA-EE-A3JD-06 5 5232490 5232490 G A ADAMTS16 Missense_Mutation p.G571R 0.08 tolerated(1) benign(0.006) TCGA-EE-A3JD-06 5 52360782 52360782 G A ITGA2 Missense_Mutation p.G548D 0.09 tolerated(0.16) possibly_damaging(0.903) TCGA-EE-A3JD-06 5 52779399 52779399 C T FST Missense_Mutation p.R115C 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 5 5465073 5465073 C T KIAA0947 Missense_Mutation p.P1876S 0.19 tolerated(0.3) benign(0.046) TCGA-EE-A3JD-06 5 63256911 63256911 C T HTR1A Silent p.L212L 0.06 TCGA-EE-A3JD-06 5 68616180 68616180 G A CCDC125 Missense_Mutation p.P63L 0.09 deleterious(0.04) benign(0.003) TCGA-EE-A3JD-06 5 68616181 68616181 G A CCDC125 Missense_Mutation p.P63S 0.09 tolerated(0.35) benign(0.005) TCGA-EE-A3JD-06 5 68715330 68715330 G A MARVELD2 Missense_Mutation p.A40T 0.10 tolerated(0.09) possibly_damaging(0.792) TCGA-EE-A3JD-06 5 70858292 70858292 C T BDP1 Missense_Mutation p.P2563L 0.11 deleterious(0.02) benign(0.338) TCGA-EE-A3JD-06 5 71752379 71752379 G A ZNF366 Missense_Mutation p.T459I 0.10 deleterious(0.01) possibly_damaging(0.65) TCGA-EE-A3JD-06 5 72469289 72469289 C T TMEM174 Silent p.L73L 0.18 TCGA-EE-A3JD-06 5 74109758 74109758 C T FAM169A Missense_Mutation p.D193N 0.08 tolerated(0.16) possibly_damaging(0.615) TCGA-EE-A3JD-06 5 74325058 74325058 G A GCNT4 Missense_Mutation p.H269Y 0.05 tolerated(0.62) benign(0.042) TCGA-EE-A3JD-06 5 74325203 74325203 C T GCNT4 Nonsense_Mutation p.W220* 0.08 TCGA-EE-A3JD-06 5 75597323 75597323 G A SV2C Nonsense_Mutation p.W651* 0.10 TCGA-EE-A3JD-06 5 80476056 80476056 C T RASGRF2 Nonsense_Mutation p.R917* 0.11 TCGA-EE-A3JD-06 5 89938673 89938673 G A GPR98 Missense_Mutation p.E790K 0.08 possibly_damaging(0.636) TCGA-EE-A3JD-06 5 89990047 89990047 C T GPR98 Missense_Mutation p.L2492F 0.15 possibly_damaging(0.86) TCGA-EE-A3JD-06 5 90072360 90072360 C T GPR98 Missense_Mutation p.P4165L 0.10 possibly_damaging(0.908) TCGA-EE-A3JD-06 5 90136455 90136455 G A GPR98 Missense_Mutation p.D5558N 0.15 possibly_damaging(0.811) TCGA-EE-A3JD-06 5 9066595 9066595 C T SEMA5A Missense_Mutation p.G746E 0.05 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 5 92923970 92923970 C T NR2F1 Silent p.L271L 0.11 TCGA-EE-A3JD-06 5 95234462 95234462 C T ELL2 Missense_Mutation p.R336Q 0.05 deleterious(0) possibly_damaging(0.847) TCGA-EE-A3JD-06 6 100841761 100841761 G A SIM1 Missense_Mutation p.S391L 0.11 deleterious(0.01) benign(0.37) TCGA-EE-A3JD-06 6 102483364 102483364 T C GRIK2 Missense_Mutation p.V745A 0.07 tolerated(0.32) possibly_damaging(0.886) TCGA-EE-A3JD-06 6 10529404 10529404 C A GCNT2 Missense_Mutation p.T87K 0.08 deleterious(0) benign(0.028) TCGA-EE-A3JD-06 6 105609476 105609476 G A POPDC3 Silent p.T103T 0.07 TCGA-EE-A3JD-06 6 10874451 10874451 G C GCM2 Missense_Mutation p.P433R 0.22 deleterious_low_confidence(0.01) benign(0.358) TCGA-EE-A3JD-06 6 10876135 10876135 G A GCM2 Nonsense_Mutation p.R191* 0.08 TCGA-EE-A3JD-06 6 109763470 109763470 A T SMPD2 Missense_Mutation p.S126C 0.07 tolerated(0.15) benign(0.008) TCGA-EE-A3JD-06 6 109771616 109771616 C T MICAL1 Missense_Mutation p.D360N 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 6 109863281 109863281 G A AK9 Missense_Mutation p.L1107F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 6 110301234 110301234 C T GPR6 Missense_Mutation p.P307S 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-EE-A3JD-06 6 110746097 110746097 C T SLC22A16 Silent p.R571R 0.10 TCGA-EE-A3JD-06 6 110763562 110763562 C T SLC22A16 Silent p.T356T 0.10 TCGA-EE-A3JD-06 6 110777693 110777693 G A SLC22A16 Intron 0.07 TCGA-EE-A3JD-06 6 112392637 112392637 G A TUBE1 Missense_Mutation p.P469L 0.08 deleterious(0.01) benign(0.094) TCGA-EE-A3JD-06 6 112452237 112452237 G A LAMA4 Nonsense_Mutation p.Q1301* 0.08 TCGA-EE-A3JD-06 6 112522872 112522872 T A LAMA4 Missense_Mutation p.Y147F 0.06 tolerated(0.15) benign(0.068) TCGA-EE-A3JD-06 6 116757052 116757052 G A DSE Missense_Mutation p.G474E 0.13 deleterious(0) possibly_damaging(0.88) TCGA-EE-A3JD-06 6 116757789 116757789 C T DSE Silent p.L720L 0.08 TCGA-EE-A3JD-06 6 116836885 116836885 G A FAM26E Silent p.K221K 0.10 TCGA-EE-A3JD-06 6 117114301 117114301 G A GPRC6A Silent p.I595I 0.07 TCGA-EE-A3JD-06 6 117647417 117647417 C T ROS1 Missense_Mutation p.G1843R 0.12 tolerated(0.23) possibly_damaging(0.707) TCGA-EE-A3JD-06 6 117725591 117725591 T C ROS1 Missense_Mutation p.E97G 0.10 tolerated(0.18) benign(0.01) TCGA-EE-A3JD-06 6 119611922 119611922 C T MAN1A1 Missense_Mutation p.E275K 0.12 deleterious(0.01) possibly_damaging(0.471) TCGA-EE-A3JD-06 6 125397950 125397950 C T RNF217 Missense_Mutation p.R185C 0.08 deleterious(0) probably_damaging(0.965) TCGA-EE-A3JD-06 6 126210353 126210353 C T NCOA7 Missense_Mutation p.P385S 0.20 tolerated_low_confidence(0.35) benign(0.004) TCGA-EE-A3JD-06 6 127797356 127797356 G A SOGA3 Silent p.I605I 0.05 TCGA-EE-A3JD-06 6 128294253 128294253 C T PTPRK Missense_Mutation p.E1401K 0.08 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JD-06 6 128388791 128388791 C T PTPRK Missense_Mutation p.G677E 0.07 tolerated(0.19) benign(0.004) TCGA-EE-A3JD-06 6 128505667 128505667 C T PTPRK Missense_Mutation p.E358K 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-EE-A3JD-06 6 130465694 130465694 C T SAMD3 Missense_Mutation p.E512K 0.10 tolerated_low_confidence(0.2) benign(0.003) TCGA-EE-A3JD-06 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.11 TCGA-EE-A3JD-06 6 132891890 132891890 T C TAAR6 Missense_Mutation p.F144L 0.08 deleterious(0.03) possibly_damaging(0.619) TCGA-EE-A3JD-06 6 132891930 132891930 G A TAAR6 Nonsense_Mutation p.W157* 0.07 TCGA-EE-A3JD-06 6 132966495 132966495 G A TAAR1 Silent p.I216I 0.08 TCGA-EE-A3JD-06 6 133078573 133078573 G A VNN2 Missense_Mutation p.P109L 0.17 deleterious(0.01) benign(0.349) TCGA-EE-A3JD-06 6 134349785 134349785 C T SLC2A12 Missense_Mutation p.G393E 0.09 tolerated(0.31) benign(0.008) TCGA-EE-A3JD-06 6 136594272 136594272 G A BCLAF1 Nonsense_Mutation p.Q636* 0.06 TCGA-EE-A3JD-06 6 137041714 137041714 C T MAP3K5 Silent p.V154V 0.16 TCGA-EE-A3JD-06 6 138539186 138539186 G A PBOV1 Missense_Mutation p.T116I 0.09 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 6 150322729 150322729 C T RAET1K RNA 0.12 TCGA-EE-A3JD-06 6 151936716 151936716 G A CCDC170 Missense_Mutation p.E617K 0.07 deleterious(0.01) probably_damaging(0.925) TCGA-EE-A3JD-06 6 152201885 152201885 G A ESR1 Missense_Mutation p.E247K 0.11 deleterious(0) possibly_damaging(0.869) TCGA-EE-A3JD-06 6 152453312 152453312 G A SYNE1 Missense_Mutation p.T8680I 0.08 probably_damaging(0.948) TCGA-EE-A3JD-06 6 152708490 152708490 C T SYNE1 Nonsense_Mutation p.W2735* 0.14 TCGA-EE-A3JD-06 6 152720830 152720830 T G SYNE1 Silent p.I2386I 0.09 TCGA-EE-A3JD-06 6 152755059 152755059 C T SYNE1 Silent p.V1444V 0.21 TCGA-EE-A3JD-06 6 152776591 152776591 C T SYNE1 Silent p.G954G 0.07 TCGA-EE-A3JD-06 6 155485632 155485632 G A TIAM2 Silent p.G704G 0.05 TCGA-EE-A3JD-06 6 157405921 157405921 C T ARID1B Silent p.S721S 0.08 TCGA-EE-A3JD-06 6 158014138 158014138 C T ZDHHC14 Silent p.P175P 0.11 TCGA-EE-A3JD-06 6 158014139 158014139 C T ZDHHC14 Missense_Mutation p.P176S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 158484827 158484827 C T SYNJ2 Nonsense_Mutation p.Q378* 0.07 TCGA-EE-A3JD-06 6 158882728 158882728 G T TULP4 Silent p.G331G 0.09 TCGA-EE-A3JD-06 6 158914729 158914729 C T TULP4 Missense_Mutation p.P586S 0.07 tolerated_low_confidence(0.15) benign(0.406) TCGA-EE-A3JD-06 6 159456855 159456855 C T TAGAP 3'UTR 0.08 TCGA-EE-A3JD-06 6 159654316 159654316 C T FNDC1 Silent p.P924P 0.12 TCGA-EE-A3JD-06 6 159655082 159655082 G A FNDC1 Missense_Mutation p.D1180N 0.18 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 6 160664719 160664719 G A SLC22A2 Silent p.F388F 0.06 TCGA-EE-A3JD-06 6 160978488 160978488 C T LPA Missense_Mutation p.E1583K 0.09 tolerated(0.47) probably_damaging(0.922) TCGA-EE-A3JD-06 6 160978564 160978564 C T LPA Silent p.G1557G 0.11 TCGA-EE-A3JD-06 6 161016404 161016404 C T LPA Missense_Mutation p.E1151K 0.08 tolerated(0.19) possibly_damaging(0.487) TCGA-EE-A3JD-06 6 161134085 161134085 C T PLG Missense_Mutation p.P159S 0.06 tolerated(0.68) benign(0.002) TCGA-EE-A3JD-06 6 161173178 161173178 C T PLG Silent p.A719A 0.08 TCGA-EE-A3JD-06 6 161771215 161771215 C T PARK2 Silent p.Q438Q 0.13 TCGA-EE-A3JD-06 6 16327214 16327214 G A ATXN1 Missense_Mutation p.P443L 0.08 tolerated(0.19) benign(0.243) TCGA-EE-A3JD-06 6 165801887 165801887 C T PDE10A Missense_Mutation p.S571N 0.06 tolerated(0.55) benign(0.105) TCGA-EE-A3JD-06 6 166571848 166571848 G A T Silent p.G421G 0.06 TCGA-EE-A3JD-06 6 166580193 166580193 G A T Missense_Mutation p.P120S 0.06 tolerated(0.2) possibly_damaging(0.544) TCGA-EE-A3JD-06 6 167754833 167754833 C T TTLL2 Missense_Mutation p.A482V 0.06 tolerated(0.29) benign(0.062) TCGA-EE-A3JD-06 6 24416695 24416695 T C MRS2 Silent p.L264L 0.09 TCGA-EE-A3JD-06 6 24416704 24416704 G A MRS2 Missense_Mutation p.E267K 0.09 deleterious(0.03) possibly_damaging(0.575) TCGA-EE-A3JD-06 6 24460608 24460608 C T GPLD1 Missense_Mutation p.D303N 0.07 tolerated(0.32) benign(0.051) TCGA-EE-A3JD-06 6 24596508 24596508 C T KIAA0319 Missense_Mutation p.D132N 0.10 tolerated(0.12) possibly_damaging(0.776) TCGA-EE-A3JD-06 6 25813083 25813083 G A SLC17A1 Silent p.S291S 0.11 TCGA-EE-A3JD-06 6 2623787 2623787 G A C6orf195 Silent p.F90F 0.07 TCGA-EE-A3JD-06 6 2678502 2678502 G A MYLK4 Missense_Mutation p.S331L 0.17 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 6 27222777 27222777 C T PRSS16 Missense_Mutation p.P448L 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 6 27368423 27368423 G C ZNF391 Missense_Mutation p.D92H 0.17 tolerated(0.08) benign(0.048) TCGA-EE-A3JD-06 6 28269385 28269385 C T PGBD1 Missense_Mutation p.P585L 0.12 tolerated(0.37) probably_damaging(0.999) TCGA-EE-A3JD-06 6 28294109 28294109 T C ZSCAN31 Missense_Mutation p.Q352R 0.09 tolerated(0.27) benign(0.001) TCGA-EE-A3JD-06 6 28540176 28540176 C T SCAND3 Missense_Mutation p.E1164K 0.38 tolerated_low_confidence(0.08) probably_damaging(0.954) TCGA-EE-A3JD-06 6 29231659 29231659 G A XXbac-BPG308J9.3 RNA 0.09 TCGA-EE-A3JD-06 6 29274811 29274811 G A OR14J1 Silent p.V115V 0.08 TCGA-EE-A3JD-06 6 29408570 29408570 C T OR10C1 Missense_Mutation p.R260C 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JD-06 6 2948778 2948778 G A SERPINB6 Silent p.F295F 0.12 TCGA-EE-A3JD-06 6 29627199 29627199 G A MOG Missense_Mutation p.M64I 0.08 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JD-06 6 30105123 30105123 G A TRIM40 Missense_Mutation p.E104K 0.06 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3JD-06 6 30121668 30121668 C T TRIM10 3'UTR 0.09 TCGA-EE-A3JD-06 6 30594998 30594998 T A ATAT1 Silent p.P6P 0.14 TCGA-EE-A3JD-06 6 30951703 30951703 C T MUC21 5'UTR 0.13 TCGA-EE-A3JD-06 6 31079879 31079879 C A C6orf15 Missense_Mutation p.G86V 0.11 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JD-06 6 31084379 31084379 G A CDSN Missense_Mutation p.S338F 0.11 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JD-06 6 31550168 31550168 C T LTB Silent p.R9R 0.07 TCGA-EE-A3JD-06 6 31692634 31692634 G A C6orf25 Intron 0.10 TCGA-EE-A3JD-06 6 31711761 31711761 C T MSH5 Missense_Mutation p.L166F 0.09 deleterious(0.02) benign(0.197) TCGA-EE-A3JD-06 6 31929122 31929122 C T SKIV2L Missense_Mutation p.P250S 0.11 tolerated(0.3) benign(0.013) TCGA-EE-A3JD-06 6 32020585 32020585 G A TNXB Missense_Mutation p.P2991S 0.12 probably_damaging(0.932) TCGA-EE-A3JD-06 6 32083616 32083616 G A ATF6B Missense_Mutation p.S671F 0.08 deleterious(0.02) possibly_damaging(0.677) TCGA-EE-A3JD-06 6 32084285 32084285 G A ATF6B Silent p.S618S 0.09 TCGA-EE-A3JD-06 6 32084286 32084286 G A ATF6B Missense_Mutation p.S618F 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 32178660 32178660 G A NOTCH4 Missense_Mutation p.P912S 0.11 tolerated(0.44) benign(0.005) TCGA-EE-A3JD-06 6 32629807 32629807 C T HLA-DQB1 Missense_Mutation p.G200R 0.12 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JD-06 6 32813349 32813349 A G TAP1 3'UTR 0.09 TCGA-EE-A3JD-06 6 33271739 33271739 G A TAPBP Missense_Mutation p.S443L 0.12 deleterious(0.04) benign(0.155) TCGA-EE-A3JD-06 6 33423862 33423862 C T ZBTB9 Missense_Mutation p.P329S 0.10 tolerated(0.48) benign(0.027) TCGA-EE-A3JD-06 6 34003902 34003902 C T GRM4 Missense_Mutation p.G662E 0.07 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 6 34826139 34826139 C T UHRF1BP1 Missense_Mutation p.A669V 0.07 deleterious(0.04) probably_damaging(0.979) TCGA-EE-A3JD-06 6 34826651 34826651 C T UHRF1BP1 Missense_Mutation p.R840C 0.08 deleterious(0.01) possibly_damaging(0.579) TCGA-EE-A3JD-06 6 35278413 35278413 C T DEF6 Missense_Mutation p.P139S 0.07 tolerated(0.05) benign(0.231) TCGA-EE-A3JD-06 6 35289167 35289167 G A DEF6 Missense_Mutation p.D626N 0.09 tolerated_low_confidence(0.65) unknown(0) TCGA-EE-A3JD-06 6 35773726 35773726 C T LHFPL5 Silent p.A93A 0.08 TCGA-EE-A3JD-06 6 37336780 37336780 C T RNF8 Missense_Mutation p.S254F 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JD-06 6 37626154 37626154 G A MDGA1 Silent p.F83F 0.14 TCGA-EE-A3JD-06 6 38142671 38142671 G A BTBD9 3'UTR 0.11 TCGA-EE-A3JD-06 6 38691179 38691179 G A DNAH8 5'UTR 0.06 TCGA-EE-A3JD-06 6 38743637 38743637 T C DNAH8 Silent p.V407V 0.08 TCGA-EE-A3JD-06 6 38843385 38843385 G A DNAH8 Missense_Mutation p.G2330R 0.09 possibly_damaging(0.803) TCGA-EE-A3JD-06 6 38976596 38976596 G A DNAH8 Silent p.Q4190Q 0.07 TCGA-EE-A3JD-06 6 38976650 38976650 G A DNAH8 Silent p.E4208E 0.08 TCGA-EE-A3JD-06 6 38998062 38998062 C T DNAH8 Missense_Mutation p.P4456L 0.10 probably_damaging(0.987) TCGA-EE-A3JD-06 6 39025308 39025308 C T GLP1R Missense_Mutation p.S79L 0.11 deleterious(0.03) benign(0.171) TCGA-EE-A3JD-06 6 39864652 39864652 C T DAAM2 Silent p.I802I 0.17 TCGA-EE-A3JD-06 6 39874839 39874839 C T MOCS1 3'UTR 0.08 TCGA-EE-A3JD-06 6 4087875 4087875 G A C6orf201 5'UTR 0.07 TCGA-EE-A3JD-06 6 41160570 41160570 G A TREML2 Silent p.V285V 0.07 TCGA-EE-A3JD-06 6 42236591 42236591 C T TRERF1 Silent p.Q246Q 0.06 TCGA-EE-A3JD-06 6 42236751 42236751 G A TRERF1 Missense_Mutation p.P193L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.573) TCGA-EE-A3JD-06 6 42656116 42656116 C T UBR2 Silent p.I1672I 0.11 TCGA-EE-A3JD-06 6 43023883 43023883 G A MRPL2 Silent p.I152I 0.06 TCGA-EE-A3JD-06 6 43153745 43153745 C T CUL9 Missense_Mutation p.S268F 0.08 tolerated(0.1) probably_damaging(0.993) TCGA-EE-A3JD-06 6 43173000 43173000 G A CUL9 Splice_Site p.X1545_splice 0.07 TCGA-EE-A3JD-06 6 43222808 43222808 C T TTBK1 Nonsense_Mutation p.R200* 0.08 TCGA-EE-A3JD-06 6 46214568 46214568 G A RCAN2 Missense_Mutation p.P163L 0.11 deleterious(0) possibly_damaging(0.451) TCGA-EE-A3JD-06 6 46847631 46847631 C T GPR116 Silent p.S320S 0.08 TCGA-EE-A3JD-06 6 49676846 49676846 T A CRISP2 Nonsense_Mutation p.K22* 0.10 TCGA-EE-A3JD-06 6 49754071 49754071 C T PGK2 Missense_Mutation p.G277D 0.08 deleterious(0.02) benign(0.041) TCGA-EE-A3JD-06 6 4996298 4996298 G A RPP40 Silent p.F260F 0.09 TCGA-EE-A3JD-06 6 4996509 4996509 G A RPP40 Silent p.C235C 0.14 TCGA-EE-A3JD-06 6 52054017 52054017 C T IL17A Missense_Mutation p.S132F 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 52370483 52370483 G A TRAM2 Silent p.A263A 0.15 TCGA-EE-A3JD-06 6 53372315 53372315 C T GCLC Silent p.T349T 0.05 TCGA-EE-A3JD-06 6 53986345 53986345 T A MLIP Missense_Mutation p.F55Y 0.06 tolerated(0.23) probably_damaging(0.969) TCGA-EE-A3JD-06 6 54173485 54173485 G A TINAG Missense_Mutation p.R46Q 0.15 deleterious(0.03) probably_damaging(0.964) TCGA-EE-A3JD-06 6 54735141 54735141 G A FAM83B Missense_Mutation p.D33N 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 55119985 55119985 C T HCRTR2 Missense_Mutation p.R152W 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 6 55198719 55198719 G A GFRAL Missense_Mutation p.G98E 0.07 tolerated(0.07) possibly_damaging(0.882) TCGA-EE-A3JD-06 6 55638937 55638937 G A BMP5 Nonsense_Mutation p.R313* 0.13 TCGA-EE-A3JD-06 6 55925560 55925560 C T COL21A1 Missense_Mutation p.V796I 0.12 tolerated(0.93) benign(0.002) TCGA-EE-A3JD-06 6 56323724 56323724 G A DST 3'UTR 0.14 TCGA-EE-A3JD-06 6 56483341 56483341 G A DST Intron 0.09 TCGA-EE-A3JD-06 6 63990952 63990952 C T LGSN Silent p.V168V 0.08 TCGA-EE-A3JD-06 6 69666657 69666657 G A BAI3 Missense_Mutation p.G494E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 6 69949036 69949036 C T BAI3 Missense_Mutation p.S911F 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 6 70071047 70071047 G A BAI3 Missense_Mutation p.M1294I 0.12 tolerated(0.38) benign(0.006) TCGA-EE-A3JD-06 6 70847596 70847596 G A COL19A1 Missense_Mutation p.G468E 0.06 deleterious(0.03) possibly_damaging(0.571) TCGA-EE-A3JD-06 6 73951283 73951283 G A KHDC1 Missense_Mutation p.S228L 0.07 tolerated_low_confidence(0.19) benign(0) TCGA-EE-A3JD-06 6 74063900 74063900 G A DPPA5 Missense_Mutation p.P17S 0.08 tolerated(0.09) benign(0.341) TCGA-EE-A3JD-06 6 74063911 74063911 C A DPPA5 Missense_Mutation p.W13L 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 74123754 74123754 G A DDX43 Missense_Mutation p.D520N 0.09 tolerated(1) benign(0.02) TCGA-EE-A3JD-06 6 7579585 7579585 G A DSP Silent p.K1054K 0.11 TCGA-EE-A3JD-06 6 75899009 75899009 C T COL12A1 Silent p.T249T 0.10 TCGA-EE-A3JD-06 6 76023945 76023945 C T FILIP1 Missense_Mutation p.V535M 0.11 tolerated(0.15) benign(0.013) TCGA-EE-A3JD-06 6 76657234 76657234 C T IMPG1 Missense_Mutation p.R614Q 0.11 tolerated(1) benign(0.101) TCGA-EE-A3JD-06 6 80626362 80626362 C T ELOVL4 Missense_Mutation p.G303E 0.09 deleterious(0.02) benign(0.002) TCGA-EE-A3JD-06 6 80626373 80626373 C T ELOVL4 Missense_Mutation p.M299I 0.10 tolerated(0.44) benign(0.003) TCGA-EE-A3JD-06 6 84417585 84417585 G A SNAP91 Missense_Mutation p.A21V 0.08 deleterious(0.02) unknown(0) TCGA-EE-A3JD-06 6 84567050 84567050 C T RIPPLY2 Missense_Mutation p.S110L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 6 84896193 84896193 T C KIAA1009 Missense_Mutation p.N420D 0.08 tolerated(0.1) benign(0.006) TCGA-EE-A3JD-06 6 87725382 87725382 C T HTR1E Silent p.I110I 0.10 TCGA-EE-A3JD-06 6 88854222 88854222 C T CNR1 Missense_Mutation p.E258K 0.09 tolerated(1) benign(0) TCGA-EE-A3JD-06 7 100151725 100151725 C T AGFG2 Nonsense_Mutation p.Q199* 0.08 TCGA-EE-A3JD-06 7 100189429 100189429 C T FBXO24 Silent p.T192T 0.06 TCGA-EE-A3JD-06 7 100229709 100229709 C T TFR2 Missense_Mutation p.G321E 0.09 tolerated(0.14) possibly_damaging(0.779) TCGA-EE-A3JD-06 7 100350389 100350389 C T ZAN Silent p.I887I 0.10 TCGA-EE-A3JD-06 7 100395359 100395359 C T ZAN 3'UTR 0.09 TCGA-EE-A3JD-06 7 100421381 100421381 G A EPHB4 Missense_Mutation p.S99F 0.16 deleterious(0.01) benign(0.131) TCGA-EE-A3JD-06 7 100482918 100482918 G A SRRT Missense_Mutation p.R415Q 0.14 deleterious(0.01) probably_damaging(0.953) TCGA-EE-A3JD-06 7 100677114 100677114 C T MUC17 Missense_Mutation p.P806L 0.06 unknown(0) TCGA-EE-A3JD-06 7 100679686 100679686 C T MUC17 Silent p.I1663I 0.07 TCGA-EE-A3JD-06 7 100681026 100681026 G T MUC17 Missense_Mutation p.S2110I 0.05 unknown(0) TCGA-EE-A3JD-06 7 100681027 100681027 C G MUC17 Missense_Mutation p.S2110R 0.05 unknown(0) TCGA-EE-A3JD-06 7 100685695 100685695 G A MUC17 Silent p.V3666V 0.07 TCGA-EE-A3JD-06 7 101200735 101200735 C T COL26A1 Silent p.P416P 0.10 TCGA-EE-A3JD-06 7 103123354 103123354 C T RELN Missense_Mutation p.D3416N 0.11 tolerated(0.1) probably_damaging(0.996) TCGA-EE-A3JD-06 7 103275896 103275896 G A RELN Missense_Mutation p.S814L 0.10 tolerated(0.27) benign(0.293) TCGA-EE-A3JD-06 7 103557529 103557529 G A RELN Silent p.F110F 0.11 TCGA-EE-A3JD-06 7 107618514 107618514 G A LAMB1 Silent p.G326G 0.08 TCGA-EE-A3JD-06 7 107696146 107696146 C T LAMB4 Missense_Mutation p.R1229K 0.08 tolerated(0.18) benign(0.002) TCGA-EE-A3JD-06 7 107746315 107746315 C T LAMB4 Missense_Mutation p.E273K 0.06 tolerated(0.09) benign(0.006) TCGA-EE-A3JD-06 7 110763511 110763511 C T LRRN3 Missense_Mutation p.P228L 0.15 deleterious(0) probably_damaging(0.965) TCGA-EE-A3JD-06 7 112129885 112129885 G A LSMEM1 Missense_Mutation p.D93N 0.07 deleterious(0.04) possibly_damaging(0.714) TCGA-EE-A3JD-06 7 112407699 112407699 T G TMEM168 Silent p.S549S 0.11 TCGA-EE-A3JD-06 7 1131671 1131671 G A GPER1 Missense_Mutation p.V103M 0.15 tolerated(0.11) benign(0.217) TCGA-EE-A3JD-06 7 113520098 113520098 G A PPP1R3A Missense_Mutation p.P350L 0.07 tolerated(0.05) benign(0.311) TCGA-EE-A3JD-06 7 117120199 117120199 C T CFTR Silent p.F17F 0.08 TCGA-EE-A3JD-06 7 117199657 117199657 C T CFTR Missense_Mutation p.S511F 0.08 deleterious(0.03) benign(0.025) TCGA-EE-A3JD-06 7 117232347 117232347 G A CFTR Missense_Mutation p.R709Q 0.10 deleterious(0.01) possibly_damaging(0.842) TCGA-EE-A3JD-06 7 119915400 119915400 G A KCND2 Missense_Mutation p.M238I 0.10 tolerated(0.48) benign(0.204) TCGA-EE-A3JD-06 7 120382599 120382599 C T KCND2 Silent p.S470S 0.07 TCGA-EE-A3JD-06 7 120911337 120911337 G A CPED1 Splice_Site p.X908_splice 0.09 TCGA-EE-A3JD-06 7 121650586 121650586 C T PTPRZ1 Missense_Mutation p.P496S 0.15 tolerated(0.62) benign(0.015) TCGA-EE-A3JD-06 7 122047607 122047607 G A CADPS2 Silent p.F911F 0.10 TCGA-EE-A3JD-06 7 122765624 122765624 A G SLC13A1 Silent p.I413I 0.21 TCGA-EE-A3JD-06 7 123109328 123109328 C T IQUB Silent p.L507L 0.07 TCGA-EE-A3JD-06 7 123508850 123508850 G A HYAL4 Missense_Mutation p.G175R 0.15 tolerated(0.12) benign(0.001) TCGA-EE-A3JD-06 7 123594178 123594178 C T SPAM1 Missense_Mutation p.T185I 0.11 tolerated(0.09) benign(0.275) TCGA-EE-A3JD-06 7 126173531 126173531 G A GRM8 Silent p.I635I 0.08 TCGA-EE-A3JD-06 7 126249424 126249424 G A GRM8 Missense_Mutation p.H496Y 0.07 tolerated(0.63) benign(0.007) TCGA-EE-A3JD-06 7 126410044 126410044 G A GRM8 Missense_Mutation p.S411F 0.23 deleterious(0) possibly_damaging(0.5) TCGA-EE-A3JD-06 7 126542622 126542622 C T GRM8 Missense_Mutation p.R377K 0.08 tolerated(1) possibly_damaging(0.76) TCGA-EE-A3JD-06 7 127961427 127961427 G A RBM28 Silent p.S485S 0.06 TCGA-EE-A3JD-06 7 128032994 128032994 G A IMPDH1 3'UTR 0.12 TCGA-EE-A3JD-06 7 128477266 128477266 C T FLNC Silent p.A218A 0.09 TCGA-EE-A3JD-06 7 128478688 128478688 C T FLNC Silent p.I414I 0.07 TCGA-EE-A3JD-06 7 128487751 128487751 G A FLNC Missense_Mutation p.G1430E 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 128487752 128487752 G A FLNC Silent p.G1430G 0.06 TCGA-EE-A3JD-06 7 128488720 128488720 C T FLNC Silent p.F1562F 0.06 TCGA-EE-A3JD-06 7 128694744 128694744 C T TNPO3 Silent p.K27K 0.12 TCGA-EE-A3JD-06 7 130025680 130025680 G A CPA1 Missense_Mutation p.D330N 0.09 tolerated(0.83) benign(0.003) TCGA-EE-A3JD-06 7 130363994 130363994 A G TSGA13 Missense_Mutation p.M129T 0.19 tolerated(0.27) benign(0.092) TCGA-EE-A3JD-06 7 130368455 130368455 C T TSGA13 Missense_Mutation p.G27R 0.07 tolerated(0.37) probably_damaging(0.979) TCGA-EE-A3JD-06 7 131833327 131833327 C T PLXNA4 Missense_Mutation p.R1580Q 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JD-06 7 131870220 131870220 C T PLXNA4 Missense_Mutation p.R999Q 0.17 deleterious(0.04) benign(0.328) TCGA-EE-A3JD-06 7 134216769 134216769 G A AKR1B10 Missense_Mutation p.G115E 0.08 deleterious(0.03) possibly_damaging(0.492) TCGA-EE-A3JD-06 7 134878080 134878080 G A WDR91 Missense_Mutation p.S521F 0.08 deleterious(0.03) benign(0.309) TCGA-EE-A3JD-06 7 135078814 135078814 C T CNOT4 Missense_Mutation p.A495T 0.12 tolerated(0.42) benign(0.382) TCGA-EE-A3JD-06 7 135078815 135078815 C T CNOT4 Silent p.Q494Q 0.10 TCGA-EE-A3JD-06 7 136699707 136699707 C T CHRM2 Missense_Mutation p.S32F 0.09 tolerated(0.07) probably_damaging(0.942) TCGA-EE-A3JD-06 7 137776630 137776630 G A AKR1D1 Silent p.K126K 0.07 TCGA-EE-A3JD-06 7 138235855 138235855 C T TRIM24 Silent p.S397S 0.10 TCGA-EE-A3JD-06 7 138444500 138444500 C T ATP6V0A4 Silent p.V212V 0.08 TCGA-EE-A3JD-06 7 138453618 138453618 A T ATP6V0A4 Silent p.R66R 0.12 TCGA-EE-A3JD-06 7 138552730 138552730 G A KIAA1549 Silent p.I1640I 0.08 TCGA-EE-A3JD-06 7 138566304 138566304 G A KIAA1549 Silent p.F1353F 0.12 TCGA-EE-A3JD-06 7 138603198 138603198 C T KIAA1549 Missense_Mutation p.E392K 0.10 tolerated(0.31) benign(0.018) TCGA-EE-A3JD-06 7 138946168 138946168 C T UBN2 Missense_Mutation p.P359L 0.06 deleterious(0.02) benign(0.033) TCGA-EE-A3JD-06 7 139168326 139168326 G A KLRG2 Silent p.P21P 0.12 TCGA-EE-A3JD-06 7 139717589 139717589 C T TBXAS1 Missense_Mutation p.H542Y 0.09 deleterious(0.01) possibly_damaging(0.808) TCGA-EE-A3JD-06 7 139726123 139726123 T A PARP12 Missense_Mutation p.N552Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 7 139790936 139790936 G A KDM7A Silent p.I928I 0.14 TCGA-EE-A3JD-06 7 139819010 139819010 C T KDM7A Silent p.E383E 0.11 TCGA-EE-A3JD-06 7 140055487 140055487 A G SLC37A3 Missense_Mutation p.V200A 0.06 deleterious(0.04) possibly_damaging(0.898) TCGA-EE-A3JD-06 7 140156541 140156541 G A MKRN1 Silent p.F299F 0.11 TCGA-EE-A3JD-06 7 140481408 140481408 G A BRAF Missense_Mutation p.S467L 0.16 deleterious(0.01) possibly_damaging(0.756) TCGA-EE-A3JD-06 7 141414102 141414102 G A WEE2 Missense_Mutation p.E146K 0.09 deleterious(0.05) possibly_damaging(0.792) TCGA-EE-A3JD-06 7 141490278 141490278 C T TAS2R5 Silent p.F39F 0.08 TCGA-EE-A3JD-06 7 141672580 141672580 A G TAS2R38 Silent p.L304L 0.09 TCGA-EE-A3JD-06 7 141673247 141673247 G A TAS2R38 Silent p.F81F 0.07 TCGA-EE-A3JD-06 7 141673423 141673423 C T TAS2R38 Missense_Mutation p.V23I 0.07 tolerated(0.93) benign(0.033) TCGA-EE-A3JD-06 7 141721516 141721516 G A MGAM Missense_Mutation p.R230K 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3JD-06 7 141722237 141722237 G A MGAM Missense_Mutation p.G294R 0.10 tolerated(0.13) benign(0.013) TCGA-EE-A3JD-06 7 141754581 141754581 G A MGAM Missense_Mutation p.E1063K 0.05 deleterious(0) possibly_damaging(0.811) TCGA-EE-A3JD-06 7 141754588 141754588 C T MGAM Missense_Mutation p.P1065L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-EE-A3JD-06 7 141758013 141758013 G T MGAM Missense_Mutation p.R1235L 0.13 tolerated(0.07) possibly_damaging(0.774) TCGA-EE-A3JD-06 7 141758086 141758086 C T MGAM Silent p.I1259I 0.06 TCGA-EE-A3JD-06 7 141794428 141794428 G A MGAM Missense_Mutation p.E1543K 0.13 deleterious(0) probably_damaging(0.945) TCGA-EE-A3JD-06 7 141796195 141796195 G A MGAM Missense_Mutation p.V1662I 0.26 tolerated(1) benign(0.017) TCGA-EE-A3JD-06 7 141955402 141955402 G A PRSS58 Silent p.V44V 0.16 TCGA-EE-A3JD-06 7 142013074 142013074 C T TRBV4-1 Silent p.L13L 0.11 TCGA-EE-A3JD-06 7 142104377 142104377 G A TRBV6-9 Missense_Mutation p.H30Y 0.13 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 7 142120307 142120307 G A TRBV7-7 Silent p.L5L 0.08 TCGA-EE-A3JD-06 7 142139334 142139334 C T TRBV7-6 Silent p.T97T 0.18 TCGA-EE-A3JD-06 7 142139732 142139732 G A TRBV7-6 Silent p.F13F 0.11 TCGA-EE-A3JD-06 7 142247224 142247224 C T TRBV7-3 Missense_Mutation p.G78R 0.08 TCGA-EE-A3JD-06 7 142460720 142460720 G A PRSS1 Missense_Mutation p.G198D 0.23 deleterious(0) possibly_damaging(0.686) TCGA-EE-A3JD-06 7 142562191 142562191 G A EPHB6 Silent p.V211V 0.10 TCGA-EE-A3JD-06 7 142573242 142573242 G A TRPV6 Silent p.L367L 0.18 TCGA-EE-A3JD-06 7 142574314 142574314 G A TRPV6 Silent p.L203L 0.10 TCGA-EE-A3JD-06 7 142636764 142636764 C T C7orf34 Missense_Mutation p.P41S 0.07 tolerated_low_confidence(0.28) benign(0.012) TCGA-EE-A3JD-06 7 142655418 142655418 A T KEL Silent p.T166T 0.20 TCGA-EE-A3JD-06 7 142880857 142880857 A G TAS2R39 Missense_Mutation p.S116G 0.06 tolerated(0.38) benign(0.012) TCGA-EE-A3JD-06 7 143092430 143092430 C T EPHA1 Missense_Mutation p.E689K 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 143092431 143092431 C T EPHA1 Silent p.L688L 0.06 TCGA-EE-A3JD-06 7 143095028 143095028 G A EPHA1 Missense_Mutation p.R534W 0.09 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 7 143140839 143140839 C T TAS2R60 Silent p.F98F 0.07 TCGA-EE-A3JD-06 7 143657112 143657112 C T OR2F1 Silent p.L17L 0.07 TCGA-EE-A3JD-06 7 143657390 143657390 G A OR2F1 Silent p.G109G 0.08 TCGA-EE-A3JD-06 7 143701141 143701141 C T OR6B1 Missense_Mutation p.P18S 0.12 tolerated(0.25) possibly_damaging(0.666) TCGA-EE-A3JD-06 7 143701710 143701710 C T OR6B1 Silent p.F207F 0.05 TCGA-EE-A3JD-06 7 143747940 143747940 G A OR2A5 Nonsense_Mutation p.W149* 0.14 TCGA-EE-A3JD-06 7 143771361 143771361 C T OR2A25 Missense_Mutation p.P17S 0.09 tolerated(1) benign(0.064) TCGA-EE-A3JD-06 7 143792875 143792875 G A OR2A12 Silent p.L225L 0.08 TCGA-EE-A3JD-06 7 143806950 143806950 C T OR2A2 Missense_Mutation p.S92F 0.10 deleterious(0.03) benign(0.378) TCGA-EE-A3JD-06 7 143807172 143807172 C T OR2A2 Missense_Mutation p.P166L 0.09 deleterious(0.02) possibly_damaging(0.495) TCGA-EE-A3JD-06 7 143807590 143807590 G A OR2A2 Silent p.Q305Q 0.07 TCGA-EE-A3JD-06 7 143826330 143826330 G A OR2A14 Missense_Mutation p.G42E 0.11 deleterious(0) possibly_damaging(0.649) TCGA-EE-A3JD-06 7 143827107 143827107 G A OR2A14 Missense_Mutation p.R301K 0.07 tolerated(0.64) benign(0.005) TCGA-EE-A3JD-06 7 143884234 143884234 C T ARHGEF35 Missense_Mutation p.D415N 0.07 tolerated(0.21) benign(0.301) TCGA-EE-A3JD-06 7 144061000 144061000 C T ARHGEF5 Missense_Mutation p.P413L 0.06 tolerated(0.06) benign(0.027) TCGA-EE-A3JD-06 7 144077134 144077134 G A ARHGEF5 Silent p.V1593V 0.06 TCGA-EE-A3JD-06 7 144098981 144098981 C T NOBOX Silent p.G91G 0.10 TCGA-EE-A3JD-06 7 144364823 144364823 C T TPK1 Intron 0.08 TCGA-EE-A3JD-06 7 146471453 146471453 C T CNTNAP2 Missense_Mutation p.A63V 0.11 deleterious(0) probably_damaging(0.919) TCGA-EE-A3JD-06 7 146536811 146536811 G A CNTNAP2 Missense_Mutation p.G73R 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 146741093 146741093 G A CNTNAP2 Nonsense_Mutation p.W166* 0.05 TCGA-EE-A3JD-06 7 147092834 147092834 C T CNTNAP2 Silent p.F544F 0.06 TCGA-EE-A3JD-06 7 1478579 1478579 G A MICALL2 Silent p.L673L 0.25 TCGA-EE-A3JD-06 7 149129460 149129460 G A ZNF777 Missense_Mutation p.P635S 0.06 tolerated(0.08) possibly_damaging(0.462) TCGA-EE-A3JD-06 7 149508020 149508020 C T SSPO RNA 0.12 TCGA-EE-A3JD-06 7 149515026 149515026 G A SSPO RNA 0.09 TCGA-EE-A3JD-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.09 tolerated(0.95) benign(0) TCGA-EE-A3JD-06 7 150269404 150269404 C T GIMAP4 Silent p.V82V 0.12 TCGA-EE-A3JD-06 7 150417459 150417459 C T GIMAP1 Missense_Mutation p.R123W 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 150439527 150439527 C T GIMAP5 Silent p.I100I 0.07 TCGA-EE-A3JD-06 7 150488600 150488600 C T TMEM176B 3'UTR 0.20 TCGA-EE-A3JD-06 7 150493570 150493570 C T TMEM176B Missense_Mutation p.E30K 0.11 tolerated(0.08) benign(0.388) TCGA-EE-A3JD-06 7 150501559 150501559 G A TMEM176A Missense_Mutation p.G222E 0.08 tolerated(1) benign(0) TCGA-EE-A3JD-06 7 150553935 150553935 G A AOC1 Missense_Mutation p.R126Q 0.08 tolerated(0.08) benign(0.004) TCGA-EE-A3JD-06 7 150656745 150656745 G A KCNH2 Silent p.F129F 0.06 TCGA-EE-A3JD-06 7 150656780 150656780 C T KCNH2 Missense_Mutation p.E118K 0.12 deleterious(0) benign(0.435) TCGA-EE-A3JD-06 7 150934798 150934798 G A CHPF2 Silent p.L450L 0.07 TCGA-EE-A3JD-06 7 151261265 151261266 TC - PRKAG2 Frame_Shift_Del p.T495Pfs*11 0.12 TCGA-EE-A3JD-06 7 15652141 15652141 C T MEOX2 Silent p.V262V 0.10 TCGA-EE-A3JD-06 7 157414157 157414157 C T PTPRN2 Silent p.K747K 0.05 TCGA-EE-A3JD-06 7 157959919 157959919 G A PTPRN2 Missense_Mutation p.P205L 0.13 deleterious(0.01) benign(0.162) TCGA-EE-A3JD-06 7 158457348 158457348 G A NCAPG2 Missense_Mutation p.S525F 0.05 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 7 18066902 18066902 G A PRPS1L1 Silent p.V168V 0.07 TCGA-EE-A3JD-06 7 18669087 18669087 G A HDAC9 Missense_Mutation p.R260Q 0.16 deleterious(0) possibly_damaging(0.586) TCGA-EE-A3JD-06 7 19765281 19765281 A C TMEM196 Silent p.L105L 0.10 TCGA-EE-A3JD-06 7 21775302 21775302 C T DNAH11 Silent p.F2502F 0.38 TCGA-EE-A3JD-06 7 21924006 21924006 A C DNAH11 Missense_Mutation p.E4169A 0.11 benign(0.085) TCGA-EE-A3JD-06 7 22202121 22202121 G A RAPGEF5 Missense_Mutation p.S288L 0.14 tolerated(0.34) benign(0.111) TCGA-EE-A3JD-06 7 23213840 23213840 C T KLHL7 Missense_Mutation p.R562C 0.08 deleterious(0) possibly_damaging(0.457) TCGA-EE-A3JD-06 7 23749924 23749924 C T STK31 Missense_Mutation p.S7F 0.10 tolerated_low_confidence(1) benign(0) TCGA-EE-A3JD-06 7 23826179 23826179 C T STK31 Missense_Mutation p.T776I 0.08 deleterious(0.02) benign(0.042) TCGA-EE-A3JD-06 7 24329174 24329174 G A NPY Missense_Mutation p.S82N 0.09 tolerated(0.44) benign(0.008) TCGA-EE-A3JD-06 7 24690166 24690166 G A MPP6 Missense_Mutation p.M162I 0.10 tolerated(0.22) benign(0.05) TCGA-EE-A3JD-06 7 2638194 2638194 C T IQCE Silent p.S512S 0.11 TCGA-EE-A3JD-06 7 27134281 27134281 G A HOXA1 Silent p.I262I 0.09 TCGA-EE-A3JD-06 7 27134339 27134339 T A HOXA1 Missense_Mutation p.E243V 0.09 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JD-06 7 28857758 28857758 C T CREB5 Missense_Mutation p.P442L 0.11 deleterious(0) unknown(0) TCGA-EE-A3JD-06 7 2949716 2949716 G A CARD11 Silent p.I1076I 0.06 TCGA-EE-A3JD-06 7 2979457 2979457 C T CARD11 Missense_Mutation p.E264K 0.07 deleterious(0.03) possibly_damaging(0.665) TCGA-EE-A3JD-06 7 2979458 2979458 C T CARD11 Silent p.K263K 0.07 TCGA-EE-A3JD-06 7 31146129 31146129 G A ADCYAP1R1 Missense_Mutation p.R441Q 0.19 deleterious(0) probably_damaging(0.97) TCGA-EE-A3JD-06 7 31378624 31378624 G A NEUROD6 Silent p.L87L 0.09 TCGA-EE-A3JD-06 7 31877577 31877577 C T PDE1C Missense_Mutation p.R390Q 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-EE-A3JD-06 7 31877578 31877578 G A PDE1C Nonsense_Mutation p.R390* 0.08 TCGA-EE-A3JD-06 7 33312753 33312753 C T BBS9 Nonsense_Mutation p.R278* 0.08 TCGA-EE-A3JD-06 7 34010029 34010029 C T BMPER Missense_Mutation p.P164L 0.08 tolerated(0.06) probably_damaging(0.94) TCGA-EE-A3JD-06 7 34014343 34014343 G A BMPER Missense_Mutation p.E175K 0.10 deleterious(0.02) benign(0.049) TCGA-EE-A3JD-06 7 34867060 34867060 C T NPSR1 Silent p.L176L 0.10 TCGA-EE-A3JD-06 7 34888154 34888154 C T NPSR1 Missense_Mutation p.L302F 0.12 tolerated(0.07) probably_damaging(0.995) TCGA-EE-A3JD-06 7 37264597 37264597 C T ELMO1 Silent p.S196S 0.07 TCGA-EE-A3JD-06 7 37916582 37916582 C T NME8 Nonsense_Mutation p.R323* 0.21 TCGA-EE-A3JD-06 7 38305122 38305122 C T TRGC1 Silent p.T53T 0.16 TCGA-EE-A3JD-06 7 38431605 38431605 G A AMPH Missense_Mutation p.P541L 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-EE-A3JD-06 7 4119157 4119157 C T SDK1 Nonsense_Mutation p.Q1089* 0.09 TCGA-EE-A3JD-06 7 42003946 42003946 G A GLI3 Silent p.F1575F 0.10 TCGA-EE-A3JD-06 7 43447216 43447216 G A HECW1 Silent p.L229L 0.10 TCGA-EE-A3JD-06 7 43590049 43590049 G A HECW1 Silent p.T1418T 0.10 TCGA-EE-A3JD-06 7 43918643 43918643 G A URGCP Missense_Mutation p.P140L 0.11 tolerated(0.5) benign(0.002) TCGA-EE-A3JD-06 7 43918644 43918644 G A URGCP Missense_Mutation p.P140S 0.11 tolerated(1) benign(0.006) TCGA-EE-A3JD-06 7 44189458 44189458 C T GCK Missense_Mutation p.D195N 0.08 tolerated(0.05) probably_damaging(0.995) TCGA-EE-A3JD-06 7 45010657 45010657 C T MYO1G Missense_Mutation p.G283E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 7 45717523 45717523 C T ADCY1 Missense_Mutation p.T554I 0.06 tolerated(0.2) benign(0.09) TCGA-EE-A3JD-06 7 45726195 45726195 C T ADCY1 Missense_Mutation p.L793F 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3JD-06 7 47814712 47814712 C T PKD1L1 3'UTR 0.13 TCGA-EE-A3JD-06 7 47835607 47835607 C T PKD1L1 Missense_Mutation p.A2779T 0.06 tolerated(0.96) benign(0.032) TCGA-EE-A3JD-06 7 47945536 47945536 G A PKD1L1 Missense_Mutation p.P476S 0.08 tolerated(0.39) benign(0.047) TCGA-EE-A3JD-06 7 4839027 4839027 G A RADIL Silent p.F1070F 0.11 TCGA-EE-A3JD-06 7 4900113 4900113 C T PAPOLB Silent p.G442G 0.07 TCGA-EE-A3JD-06 7 4917611 4917611 C T RADIL Missense_Mutation p.E54K 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 7 4946991 4946991 C T MMD2 3'UTR 0.10 TCGA-EE-A3JD-06 7 4947021 4947021 G A MMD2 3'UTR 0.10 TCGA-EE-A3JD-06 7 50611661 50611661 C T DDC Silent p.L41L 0.08 TCGA-EE-A3JD-06 7 51092839 51092839 G A COBL Silent p.I1245I 0.07 TCGA-EE-A3JD-06 7 51096227 51096227 A T COBL Missense_Mutation p.F856I 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 7 53103536 53103536 C T POM121L12 Silent p.L58L 0.13 TCGA-EE-A3JD-06 7 53103629 53103629 C T POM121L12 Missense_Mutation p.P89S 0.12 tolerated(0.1) benign(0.032) TCGA-EE-A3JD-06 7 55260515 55260515 G A EGFR Silent p.Q894Q 0.12 TCGA-EE-A3JD-06 7 55269012 55269012 C T EGFR Silent p.S1026S 0.08 TCGA-EE-A3JD-06 7 5567912 5567912 C T ACTB Missense_Mutation p.G268S 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3JD-06 7 5567913 5567913 C T ACTB Silent p.L267L 0.10 TCGA-EE-A3JD-06 7 5662458 5662458 G A RNF216 3'UTR 0.04 TCGA-EE-A3JD-06 7 5662690 5662690 G A RNF216 Missense_Mutation p.A858V 0.09 tolerated(0.38) probably_damaging(0.919) TCGA-EE-A3JD-06 7 64167478 64167478 C T ZNF107 Missense_Mutation p.H266Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JD-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.16 deleterious(0) possibly_damaging(0.869) TCGA-EE-A3JD-06 7 71134994 71134994 G A WBSCR17 Missense_Mutation p.R435K 0.07 tolerated(0.61) benign(0) TCGA-EE-A3JD-06 7 72745747 72745747 C T FKBP6 Missense_Mutation p.R186C 0.10 tolerated(0.13) benign(0.082) TCGA-EE-A3JD-06 7 73731903 73731903 C T CLIP2 Silent p.P9P 0.06 TCGA-EE-A3JD-06 7 751023 751023 G A PRKAR1B Silent p.I40I 0.08 TCGA-EE-A3JD-06 7 75197555 75197555 G A HIP1 Missense_Mutation p.P251S 0.09 deleterious(0.05) probably_damaging(0.981) TCGA-EE-A3JD-06 7 75401244 75401244 C T CCL26 Missense_Mutation p.E51K 0.06 tolerated(0.23) benign(0.014) TCGA-EE-A3JD-06 7 75442967 75442967 G A CCL24 Missense_Mutation p.P23S 0.10 tolerated(0.05) possibly_damaging(0.598) TCGA-EE-A3JD-06 7 75693679 75693679 C T MDH2 Missense_Mutation p.P219L 0.10 deleterious(0.02) possibly_damaging(0.489) TCGA-EE-A3JD-06 7 76062937 76062937 C T ZP3 Missense_Mutation p.P229L 0.08 deleterious(0.02) possibly_damaging(0.759) TCGA-EE-A3JD-06 7 81372783 81372783 G A HGF Missense_Mutation p.P251S 0.09 tolerated(0.05) benign(0.019) TCGA-EE-A3JD-06 7 82388008 82388008 C T PCLO Silent p.G5104G 0.10 TCGA-EE-A3JD-06 7 82544307 82544307 G A PCLO Missense_Mutation p.S4332L 0.09 unknown(0) TCGA-EE-A3JD-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.11 unknown(0) TCGA-EE-A3JD-06 7 82578863 82578863 C T PCLO Missense_Mutation p.D3681N 0.07 unknown(0) TCGA-EE-A3JD-06 7 82579382 82579382 T C PCLO Missense_Mutation p.K3508E 0.15 unknown(0) TCGA-EE-A3JD-06 7 82584459 82584459 C T PCLO Missense_Mutation p.R1937Q 0.23 unknown(0) TCGA-EE-A3JD-06 7 82585683 82585683 C T PCLO Missense_Mutation p.R1529Q 0.23 unknown(0) TCGA-EE-A3JD-06 7 82763711 82763711 G A PCLO Missense_Mutation p.S1052L 0.15 unknown(0) TCGA-EE-A3JD-06 7 83689803 83689803 C T SEMA3A Silent p.L175L 0.11 TCGA-EE-A3JD-06 7 86468384 86468384 G A GRM3 Missense_Mutation p.M518I 0.11 tolerated(0.73) benign(0.004) TCGA-EE-A3JD-06 7 86468433 86468433 G A GRM3 Missense_Mutation p.E535K 0.05 tolerated(0.09) possibly_damaging(0.455) TCGA-EE-A3JD-06 7 87005030 87005030 C T CROT Nonsense_Mutation p.R275* 0.06 TCGA-EE-A3JD-06 7 87037538 87037538 C T ABCB4 Missense_Mutation p.G1032R 0.15 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 7 87082366 87082366 G A ABCB4 Nonsense_Mutation p.R144* 0.11 TCGA-EE-A3JD-06 7 87795236 87795236 G A ADAM22 Silent p.K722K 0.19 TCGA-EE-A3JD-06 7 89939461 89939461 C T C7orf63 Missense_Mutation p.A912V 0.06 deleterious(0) possibly_damaging(0.84) TCGA-EE-A3JD-06 7 90741917 90741917 G A CDK14 Silent p.K387K 0.12 TCGA-EE-A3JD-06 7 90895665 90895665 C T FZD1 Silent p.F490F 0.07 TCGA-EE-A3JD-06 7 91714906 91714906 C T AKAP9 Missense_Mutation p.S2977L 0.10 possibly_damaging(0.474) TCGA-EE-A3JD-06 7 92730652 92730652 C T SAMD9 Missense_Mutation p.E1587K 0.10 tolerated(0.49) benign(0.006) TCGA-EE-A3JD-06 7 92731123 92731123 C T SAMD9 Missense_Mutation p.E1430K 0.08 deleterious(0.01) possibly_damaging(0.864) TCGA-EE-A3JD-06 7 92761187 92761187 G A SAMD9L Silent p.F1366F 0.09 TCGA-EE-A3JD-06 7 92762055 92762055 C T SAMD9L Missense_Mutation p.R1077Q 0.12 deleterious(0.03) benign(0.345) TCGA-EE-A3JD-06 7 92844913 92844913 C T HEPACAM2 Silent p.V172V 0.08 TCGA-EE-A3JD-06 7 94034521 94034521 G A COL1A2 Missense_Mutation p.G148E 0.20 unknown(0) TCGA-EE-A3JD-06 7 94034533 94034533 G A COL1A2 Missense_Mutation p.R152Q 0.12 unknown(0) TCGA-EE-A3JD-06 7 95224385 95224385 G A PDK4 Silent p.I74I 0.06 TCGA-EE-A3JD-06 7 96651519 96651519 G A DLX5 Missense_Mutation p.S173L 0.08 deleterious(0.01) benign(0.338) TCGA-EE-A3JD-06 7 98602800 98602800 C T TRRAP Missense_Mutation p.R3514W 0.12 probably_damaging(1) TCGA-EE-A3JD-06 7 99022469 99022469 G A ATP5J2-PTCD1 Silent p.A611A 0.13 TCGA-EE-A3JD-06 7 99030974 99030974 C T ATP5J2-PTCD1 Missense_Mutation p.S223N 0.09 tolerated(0.3) benign(0.382) TCGA-EE-A3JD-06 8 101052308 101052308 G A RGS22 Missense_Mutation p.T649I 0.10 tolerated(0.2) benign(0.011) TCGA-EE-A3JD-06 8 101190158 101190158 C T SPAG1 Missense_Mutation p.H139Y 0.09 tolerated(1) benign(0.308) TCGA-EE-A3JD-06 8 101540168 101540168 G A ANKRD46 Silent p.I125I 0.09 TCGA-EE-A3JD-06 8 102555576 102555576 C T GRHL2 Missense_Mutation p.P43L 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 8 103308007 103308007 G A UBR5 Silent p.L1223L 0.10 TCGA-EE-A3JD-06 8 104922370 104922370 G A RIMS2 Missense_Mutation p.D545N 0.10 deleterious_low_confidence(0) benign(0.272) TCGA-EE-A3JD-06 8 105361650 105361650 G A DCSTAMP Silent p.R290R 0.07 TCGA-EE-A3JD-06 8 105405031 105405031 C T DPYS Missense_Mutation p.R475Q 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-EE-A3JD-06 8 10755512 10755512 G A XKR6 Nonsense_Mutation p.R626* 0.10 TCGA-EE-A3JD-06 8 10756350 10756350 C T XKR6 Silent p.R346R 0.06 TCGA-EE-A3JD-06 8 107782054 107782054 C T ABRA Missense_Mutation p.G122E 0.11 tolerated(0.16) probably_damaging(0.918) TCGA-EE-A3JD-06 8 110100442 110100442 G A TRHR Nonsense_Mutation p.W234* 0.16 TCGA-EE-A3JD-06 8 110437383 110437383 C T PKHD1L1 Missense_Mutation p.H923Y 0.09 tolerated(0.1) benign(0.055) TCGA-EE-A3JD-06 8 110509215 110509215 G A PKHD1L1 Missense_Mutation p.M3465I 0.08 tolerated(0.19) possibly_damaging(0.608) TCGA-EE-A3JD-06 8 110520420 110520420 G A PKHD1L1 Silent p.L3774L 0.11 TCGA-EE-A3JD-06 8 113237016 113237016 A T CSMD3 Missense_Mutation p.V3703D 0.10 deleterious(0) probably_damaging(0.959) TCGA-EE-A3JD-06 8 113316994 113316994 G A CSMD3 Missense_Mutation p.P2741L 0.08 deleterious(0.02) benign(0.099) TCGA-EE-A3JD-06 8 113363430 113363430 C T CSMD3 Nonsense_Mutation p.W2100* 0.06 TCGA-EE-A3JD-06 8 113662503 113662503 G A CSMD3 Missense_Mutation p.S1027F 0.08 tolerated(0.54) possibly_damaging(0.893) TCGA-EE-A3JD-06 8 114326879 114326879 G A CSMD3 Nonsense_Mutation p.Q108* 0.13 TCGA-EE-A3JD-06 8 114327001 114327001 C T CSMD3 Missense_Mutation p.G67E 0.06 deleterious(0.03) possibly_damaging(0.651) TCGA-EE-A3JD-06 8 120233967 120233967 G A MAL2 Silent p.V91V 0.06 TCGA-EE-A3JD-06 8 120430338 120430338 C T NOV Silent p.Y117Y 0.08 TCGA-EE-A3JD-06 8 120865425 120865425 T C DSCC1 Silent p.Q71Q 0.06 TCGA-EE-A3JD-06 8 121290694 121290694 C T COL14A1 Nonsense_Mutation p.R1120* 0.08 TCGA-EE-A3JD-06 8 124105836 124105836 C T TBC1D31 Silent p.F175F 0.11 TCGA-EE-A3JD-06 8 124358978 124358978 G A ATAD2 Missense_Mutation p.P742L 0.10 tolerated(0.89) benign(0.063) TCGA-EE-A3JD-06 8 124553243 124553243 G A FBXO32 Silent p.L4L 0.13 TCGA-EE-A3JD-06 8 124553245 124553245 G A FBXO32 Missense_Mutation p.L4F 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JD-06 8 124748074 124748074 T C ANXA13 Missense_Mutation p.K20R 0.11 tolerated(0.47) benign(0.004) TCGA-EE-A3JD-06 8 124978440 124978440 G A FER1L6 Silent p.E98E 0.13 TCGA-EE-A3JD-06 8 124989728 124989728 C T FER1L6 Silent p.F314F 0.09 TCGA-EE-A3JD-06 8 125076686 125076686 C T FER1L6 Missense_Mutation p.P1143S 0.10 tolerated(0.22) benign(0.002) TCGA-EE-A3JD-06 8 130761734 130761734 G A GSDMC Silent p.S417S 0.08 TCGA-EE-A3JD-06 8 131104275 131104275 G A ASAP1 Missense_Mutation p.S839F 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-EE-A3JD-06 8 131916227 131916227 C T ADCY8 Missense_Mutation p.G568S 0.06 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 8 134474154 134474154 G A ST3GAL1 Silent p.I271I 0.07 TCGA-EE-A3JD-06 8 135614509 135614509 G A ZFAT Nonsense_Mutation p.Q485* 0.11 TCGA-EE-A3JD-06 8 142178392 142178392 A C DENND3 Missense_Mutation p.E601D 0.09 tolerated(0.7) benign(0.009) TCGA-EE-A3JD-06 8 143694845 143694845 T A ARC Missense_Mutation p.N263I 0.12 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 8 144662886 144662886 G A EEF1D Silent p.P500P 0.08 TCGA-EE-A3JD-06 8 144874996 144874996 G A SCRIB Silent p.S1353S 0.16 TCGA-EE-A3JD-06 8 144940786 144940786 C T EPPK1 Silent p.E2212E 0.08 TCGA-EE-A3JD-06 8 145619965 145619965 G A CPSF1 Missense_Mutation p.P1154L 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 8 145947980 145947980 C T ZNF251 Silent p.G355G 0.11 TCGA-EE-A3JD-06 8 145948186 145948186 G A ZNF251 Missense_Mutation p.H287Y 0.10 deleterious(0) benign(0.365) TCGA-EE-A3JD-06 8 146108125 146108125 C T ZNF250 Missense_Mutation p.R153K 0.08 tolerated(0.86) benign(0) TCGA-EE-A3JD-06 8 16026106 16026106 G A MSR1 Missense_Mutation p.S164F 0.08 tolerated(0.06) possibly_damaging(0.836) TCGA-EE-A3JD-06 8 17417918 17417918 G A SLC7A2 Silent p.S500S 0.12 TCGA-EE-A3JD-06 8 18258356 18258356 C T NAT2 Silent p.P281P 0.07 TCGA-EE-A3JD-06 8 1844594 1844594 C T ARHGEF10 Silent p.P512P 0.13 TCGA-EE-A3JD-06 8 2057203 2057203 G A MYOM2 Missense_Mutation p.E1021K 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JD-06 8 22481492 22481492 G A BIN3 Missense_Mutation p.P184L 0.11 tolerated(0.09) possibly_damaging(0.696) TCGA-EE-A3JD-06 8 22972231 22972231 C T TNFRSF10C Silent p.T76T 0.11 TCGA-EE-A3JD-06 8 23049444 23049444 C T TNFRSF10A Silent p.T390T 0.07 TCGA-EE-A3JD-06 8 23059356 23059356 G A TNFRSF10A Silent p.D198D 0.09 TCGA-EE-A3JD-06 8 23155527 23155527 G A LOXL2 3'UTR 0.13 TCGA-EE-A3JD-06 8 23702327 23702327 C T STC1 Missense_Mutation p.D234N 0.08 tolerated(0.52) benign(0) TCGA-EE-A3JD-06 8 24199120 24199120 G A ADAM28 Missense_Mutation p.M560I 0.06 tolerated(0.08) benign(0.015) TCGA-EE-A3JD-06 8 24207478 24207478 G A ADAM28 Missense_Mutation p.D698N 0.07 tolerated(0.5) benign(0.065) TCGA-EE-A3JD-06 8 24772027 24772027 G A NEFM Missense_Mutation p.E241K 0.08 deleterious(0) unknown(0) TCGA-EE-A3JD-06 8 26628095 26628095 G A ADRA1A Silent p.I324I 0.08 TCGA-EE-A3JD-06 8 27296617 27296617 C T PTK2B Silent p.S571S 0.11 TCGA-EE-A3JD-06 8 27319169 27319169 G A CHRNA2 Missense_Mutation p.P523S 0.09 deleterious(0) probably_damaging(0.928) TCGA-EE-A3JD-06 8 27399008 27399008 C T EPHX2 Silent p.Y466Y 0.08 TCGA-EE-A3JD-06 8 27455978 27455978 G A CLU Missense_Mutation p.R447W 0.07 tolerated(0.07) benign(0.011) TCGA-EE-A3JD-06 8 2820859 2820859 G A CSMD1 Silent p.F3113F 0.09 TCGA-EE-A3JD-06 8 28984712 28984712 C T KIF13B Missense_Mutation p.C1050Y 0.09 deleterious(0.03) benign(0.395) TCGA-EE-A3JD-06 8 3019773 3019773 G A CSMD1 Missense_Mutation p.P1918S 0.14 probably_damaging(0.987) TCGA-EE-A3JD-06 8 30492628 30492628 C T GTF2E2 Missense_Mutation p.G60E 0.08 tolerated(0.44) benign(0.045) TCGA-EE-A3JD-06 8 3081376 3081376 C T CSMD1 Silent p.G1453G 0.17 TCGA-EE-A3JD-06 8 32613921 32613921 G A NRG1 Silent p.K273K 0.10 TCGA-EE-A3JD-06 8 35606211 35606211 G A UNC5D Missense_Mutation p.E645K 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JD-06 8 41166440 41166440 T C SFRP1 Missense_Mutation p.N80S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 8 42711286 42711286 A G RNF170 3'UTR 0.09 TCGA-EE-A3JD-06 8 43173647 43173647 G A POTEA RNA 0.07 TCGA-EE-A3JD-06 8 55533824 55533824 G A RP1 Missense_Mutation p.D100N 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 8 55537550 55537550 C T RP1 Missense_Mutation p.P370S 0.10 tolerated(0.25) benign(0.025) TCGA-EE-A3JD-06 8 55538048 55538048 G A RP1 Missense_Mutation p.E536K 0.10 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JD-06 8 55538365 55538365 A G RP1 Silent p.R641R 0.11 TCGA-EE-A3JD-06 8 55540336 55540336 C T RP1 Silent p.F1298F 0.11 TCGA-EE-A3JD-06 8 55541799 55541799 C T RP1 Missense_Mutation p.S1786L 0.10 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JD-06 8 61757561 61757561 C T CHD7 Silent p.F1663F 0.10 TCGA-EE-A3JD-06 8 65527679 65527679 C T CYP7B1 Missense_Mutation p.E321K 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 8 66988929 66988929 C T DNAJC5B Missense_Mutation p.P52S 0.07 deleterious(0.01) possibly_damaging(0.612) TCGA-EE-A3JD-06 8 6782392 6782392 G A DEFA6 Missense_Mutation p.S84F 0.06 tolerated(0.69) benign(0.004) TCGA-EE-A3JD-06 8 68007774 68007774 C T CSPP1 Silent p.L253L 0.09 TCGA-EE-A3JD-06 8 68995601 68995601 C T PREX2 Missense_Mutation p.L669F 0.10 deleterious(0.01) possibly_damaging(0.771) TCGA-EE-A3JD-06 8 69400280 69400280 C T C8orf34 Silent p.L253L 0.10 TCGA-EE-A3JD-06 8 71574071 71574071 C T LACTB2 Missense_Mutation p.A62T 0.09 tolerated(0.19) benign(0.05) TCGA-EE-A3JD-06 8 71619375 71619375 G A XKR9 Silent p.A160A 0.10 TCGA-EE-A3JD-06 8 72267137 72267137 C T EYA1 Missense_Mutation p.E2K 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3JD-06 8 77616858 77616858 C T ZFHX4 Nonsense_Mutation p.Q179* 0.09 TCGA-EE-A3JD-06 8 77617180 77617180 C T ZFHX4 Missense_Mutation p.S286F 0.10 possibly_damaging(0.683) TCGA-EE-A3JD-06 8 77763659 77763659 C T ZFHX4 Missense_Mutation p.P1501L 0.09 possibly_damaging(0.851) TCGA-EE-A3JD-06 8 77767571 77767571 C T ZFHX4 Missense_Mutation p.S2805L 0.14 probably_damaging(0.975) TCGA-EE-A3JD-06 8 77768044 77768044 G A ZFHX4 Missense_Mutation p.G2963R 0.14 probably_damaging(0.999) TCGA-EE-A3JD-06 8 77775789 77775789 G A ZFHX4 Missense_Mutation p.G3280E 0.08 probably_damaging(0.999) TCGA-EE-A3JD-06 8 81577238 81577238 C T ZNF704 Missense_Mutation p.A247T 0.07 tolerated(0.69) benign(0.02) TCGA-EE-A3JD-06 8 8185662 8185662 G A SGK223 Missense_Mutation p.S877F 0.07 probably_damaging(0.991) TCGA-EE-A3JD-06 8 8185786 8185786 G A SGK223 Missense_Mutation p.P836S 0.06 benign(0.03) TCGA-EE-A3JD-06 8 85097230 85097230 C T RALYL 5'UTR 0.08 TCGA-EE-A3JD-06 8 86041443 86041443 C T LRRCC1 Silent p.S485S 0.05 TCGA-EE-A3JD-06 8 86042224 86042224 C T LRRCC1 Missense_Mutation p.S566F 0.12 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JD-06 8 87242492 87242492 C T SLC7A13 Silent p.E5E 0.08 TCGA-EE-A3JD-06 8 87641241 87641241 G A CNGB3 Silent p.T462T 0.08 TCGA-EE-A3JD-06 8 88885825 88885825 C T DCAF4L2 Silent p.R125R 0.10 TCGA-EE-A3JD-06 8 8998971 8998971 G A PPP1R3B Missense_Mutation p.S64F 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-EE-A3JD-06 8 91094893 91094893 G A CALB1 Silent p.I11I 0.10 TCGA-EE-A3JD-06 8 93088317 93088317 T A RUNX1T1 Intron 0.12 TCGA-EE-A3JD-06 8 99441223 99441223 G A KCNS2 Missense_Mutation p.G339E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 100888950 100888950 A T CORO2A Missense_Mutation p.S443T 0.16 tolerated(0.27) benign(0.03) TCGA-EE-A3JD-06 9 101156521 101156521 C T GABBR2 Silent p.K438K 0.19 TCGA-EE-A3JD-06 9 104133572 104133572 C T BAAT Missense_Mutation p.E39K 0.09 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JD-06 9 104433278 104433278 G A GRIN3A Silent p.P472P 0.17 TCGA-EE-A3JD-06 9 105767709 105767709 G A CYLC2 Missense_Mutation p.E266K 0.15 tolerated(0.73) unknown(0) TCGA-EE-A3JD-06 9 107288855 107288855 G A OR13C4 Silent p.L212L 0.12 TCGA-EE-A3JD-06 9 107298818 107298818 G A OR13C3 Silent p.L93L 0.11 TCGA-EE-A3JD-06 9 107331809 107331809 G A OR13C8 Missense_Mutation p.D121N 0.15 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 9 107361157 107361157 C T OR13C5 Missense_Mutation p.E180K 0.17 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JD-06 9 107367195 107367195 G A OR13C2 Silent p.S238S 0.13 TCGA-EE-A3JD-06 9 107457101 107457101 G A OR13D1 Missense_Mutation p.M133I 0.12 deleterious(0) possibly_damaging(0.643) TCGA-EE-A3JD-06 9 110249759 110249759 G A KLF4 Missense_Mutation p.P306S 0.16 tolerated(0.29) benign(0.002) TCGA-EE-A3JD-06 9 113221378 113221378 C T SVEP1 Missense_Mutation p.G1113E 0.17 probably_damaging(1) TCGA-EE-A3JD-06 9 113312205 113312205 G A SVEP1 Silent p.T237T 0.15 TCGA-EE-A3JD-06 9 114089932 114089932 G A OR2K2 Missense_Mutation p.P261L 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 114429186 114429186 C T DNAJC25-GNG10 Missense_Mutation p.P143L 0.32 tolerated_low_confidence(0.37) benign(0.139) TCGA-EE-A3JD-06 9 114490225 114490225 C A C9orf84 Nonsense_Mutation p.E444* 0.12 TCGA-EE-A3JD-06 9 116021091 116021091 C T SLC31A1 Missense_Mutation p.P107L 0.16 deleterious(0.02) possibly_damaging(0.625) TCGA-EE-A3JD-06 9 117087381 117087381 C T ORM1 Silent p.L163L 0.23 TCGA-EE-A3JD-06 9 119567939 119567939 G A ASTN2 Nonsense_Mutation p.Q739* 0.15 TCGA-EE-A3JD-06 9 119568089 119568089 C T ASTN2 Missense_Mutation p.E689K 0.20 deleterious(0.01) unknown(0) TCGA-EE-A3JD-06 9 120053707 120053707 G A ASTN2 Silent p.S176S 0.16 TCGA-EE-A3JD-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.18 TCGA-EE-A3JD-06 9 121929824 121929824 C T BRINP1 Nonsense_Mutation p.W608* 0.15 TCGA-EE-A3JD-06 9 121976369 121976369 G A BRINP1 Silent p.I250I 0.12 TCGA-EE-A3JD-06 9 123182191 123182191 G A CDK5RAP2 Missense_Mutation p.P1351L 0.19 tolerated(0.08) possibly_damaging(0.908) TCGA-EE-A3JD-06 9 123779751 123779751 G A C5 Silent p.G585G 0.15 TCGA-EE-A3JD-06 9 124979498 124979498 G T LHX6 Silent p.R177R 0.16 TCGA-EE-A3JD-06 9 125239753 125239753 G A OR1J1 Silent p.I151I 0.14 TCGA-EE-A3JD-06 9 125281455 125281455 C T OR1J4 Silent p.F12F 0.15 TCGA-EE-A3JD-06 9 125423950 125423950 A G OR1L1 5'Flank 0.09 TCGA-EE-A3JD-06 9 125424883 125424883 A G OR1L1 Missense_Mutation p.K297E 0.08 deleterious(0) benign(0.178) TCGA-EE-A3JD-06 9 125438074 125438074 C T OR1L3 Silent p.L222L 0.12 TCGA-EE-A3JD-06 9 125512920 125512920 C T OR1L6 Missense_Mutation p.S265F 0.16 deleterious(0.02) benign(0.168) TCGA-EE-A3JD-06 9 125617604 125617604 G A RC3H2 Missense_Mutation p.P892S 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-EE-A3JD-06 9 127262837 127262837 G A NR5A1 Silent p.P134P 0.23 TCGA-EE-A3JD-06 9 130494319 130494319 G A TOR2A Silent p.F320F 0.11 TCGA-EE-A3JD-06 9 130687429 130687429 C T PIP5KL1 Missense_Mutation p.D292N 0.08 tolerated(0.06) benign(0.2) TCGA-EE-A3JD-06 9 130688200 130688200 G A PIP5KL1 Missense_Mutation p.P237S 0.23 tolerated(0.83) benign(0.016) TCGA-EE-A3JD-06 9 131010938 131010938 C T DNM1 Missense_Mutation p.T661I 0.17 tolerated(0.14) benign(0.095) TCGA-EE-A3JD-06 9 131019733 131019733 G A GOLGA2 Silent p.F903F 0.12 TCGA-EE-A3JD-06 9 131038520 131038520 C T SWI5 Silent p.G32G 0.18 TCGA-EE-A3JD-06 9 131502360 131502360 G A ZER1 Missense_Mutation p.S631F 0.12 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JD-06 9 13168489 13168489 G A MPDZ Nonsense_Mutation p.R1044* 0.08 TCGA-EE-A3JD-06 9 131858390 131858390 G A CRAT Nonsense_Mutation p.R518* 0.11 TCGA-EE-A3JD-06 9 133993169 133993169 G A AIF1L Missense_Mutation p.E103K 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-EE-A3JD-06 9 135374955 135374955 C T C9orf171 Silent p.L200L 0.23 TCGA-EE-A3JD-06 9 135517413 135517413 C T DDX31 Missense_Mutation p.R578K 0.13 tolerated(1) benign(0.002) TCGA-EE-A3JD-06 9 136289454 136289454 C T ADAMTS13 Silent p.S62S 0.20 TCGA-EE-A3JD-06 9 136916766 136916766 C T BRD3 Silent p.Q139Q 0.19 TCGA-EE-A3JD-06 9 137707456 137707456 C T COL5A1 Missense_Mutation p.P1350L 0.17 unknown(0) TCGA-EE-A3JD-06 9 137710502 137710502 G A COL5A1 Missense_Mutation p.G1411R 0.14 unknown(0) TCGA-EE-A3JD-06 9 138557706 138557706 G A LCN9 Splice_Site p.X159_splice 0.14 TCGA-EE-A3JD-06 9 138651672 138651672 G A KCNT1 Missense_Mutation p.M334I 0.12 tolerated(0.06) benign(0.21) TCGA-EE-A3JD-06 9 139361533 139361533 G A SEC16A Missense_Mutation p.P1269S 0.20 deleterious(0.04) benign(0.086) TCGA-EE-A3JD-06 9 139757293 139757293 A G EDF1 Intron 0.16 TCGA-EE-A3JD-06 9 140074636 140074636 G A ANAPC2 Silent p.L629L 0.28 TCGA-EE-A3JD-06 9 140807694 140807694 G A CACNA1B Missense_Mutation p.R198K 0.15 deleterious(0) benign(0.069) TCGA-EE-A3JD-06 9 140938287 140938287 G A CACNA1B Silent p.V1116V 0.21 TCGA-EE-A3JD-06 9 141016329 141016329 C T CACNA1B Silent p.L2300L 0.10 TCGA-EE-A3JD-06 9 14722444 14722444 C T CER1 Missense_Mutation p.R76K 0.08 tolerated(0.22) benign(0.028) TCGA-EE-A3JD-06 9 14823314 14823314 G A FREM1 Silent p.N727N 0.11 TCGA-EE-A3JD-06 9 18950914 18950914 G A FAM154A Silent p.L20L 0.14 TCGA-EE-A3JD-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 27169587 27169587 A T TEK Silent p.G196G 0.11 TCGA-EE-A3JD-06 9 27206697 27206697 G A TEK Missense_Mutation p.D828N 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 32633685 32633685 G A TAF1L Silent p.I631I 0.13 TCGA-EE-A3JD-06 9 34649471 34649471 C T GALT Silent p.Y323Y 0.13 TCGA-EE-A3JD-06 9 34660508 34660508 G A IL11RA Silent p.R360R 0.08 TCGA-EE-A3JD-06 9 34660931 34660931 C T IL11RA Missense_Mutation p.P417L 0.06 deleterious(0) probably_damaging(0.932) TCGA-EE-A3JD-06 9 35043898 35043898 G A C9orf131 Nonsense_Mutation p.W424* 0.10 TCGA-EE-A3JD-06 9 35735337 35735337 C T CREB3 Nonsense_Mutation p.Q193* 0.07 TCGA-EE-A3JD-06 9 35853798 35853798 C T TMEM8B Silent p.G460G 0.21 TCGA-EE-A3JD-06 9 35853864 35853864 G A TMEM8B 3'UTR 0.20 TCGA-EE-A3JD-06 9 35957934 35957934 G A OR2S2 Silent p.S54S 0.08 TCGA-EE-A3JD-06 9 39085744 39085744 C T CNTNAP3 Missense_Mutation p.G1144E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 39888258 39888258 T G SPATA31A2 Silent p.L415L 0.16 TCGA-EE-A3JD-06 9 43630623 43630623 C T SPATA31A6 Missense_Mutation p.D27N 0.22 tolerated(0.12) probably_damaging(0.981) TCGA-EE-A3JD-06 9 70177138 70177138 C T FOXD4L5 Silent p.P282P 0.11 TCGA-EE-A3JD-06 9 70918873 70918873 G A FOXD4L3 Missense_Mutation p.E336K 0.06 tolerated_low_confidence(0.37) benign(0.002) TCGA-EE-A3JD-06 9 71006540 71006540 G A PGM5 Missense_Mutation p.G263E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 71532599 71532599 C T PIP5K1B Missense_Mutation p.L303F 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 9 72047535 72047535 G A APBA1 Missense_Mutation p.R787W 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 72067053 72067053 C T APBA1 Silent p.S651S 0.09 TCGA-EE-A3JD-06 9 73151867 73151867 C T TRPM3 Missense_Mutation p.E1376K 0.16 tolerated_low_confidence(0.48) possibly_damaging(0.547) TCGA-EE-A3JD-06 9 74828873 74828873 G A GDA Missense_Mutation p.E182K 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 74838073 74838073 C T GDA Missense_Mutation p.S215F 0.07 deleterious(0.01) possibly_damaging(0.543) TCGA-EE-A3JD-06 9 77257718 77257718 C T RORB Silent p.T208T 0.08 TCGA-EE-A3JD-06 9 77415188 77415188 C T TRPM6 Silent p.R740R 0.09 TCGA-EE-A3JD-06 9 78784672 78784672 C T PCSK5 Missense_Mutation p.H558Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 9 78925574 78925574 G A PCSK5 Missense_Mutation p.A1204T 0.09 tolerated(0.49) benign(0.001) TCGA-EE-A3JD-06 9 78942989 78942989 G A PCSK5 Silent p.L1441L 0.13 TCGA-EE-A3JD-06 9 79324450 79324450 C T PRUNE2 Missense_Mutation p.E914K 0.10 deleterious(0.02) benign(0.086) TCGA-EE-A3JD-06 9 79465512 79465512 C T PRUNE2 Missense_Mutation p.E71K 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JD-06 9 79936185 79936185 A T VPS13A Missense_Mutation p.D1839V 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 84609113 84609113 G A SPATA31D1 Missense_Mutation p.G1243D 0.11 deleterious(0.02) possibly_damaging(0.793) TCGA-EE-A3JD-06 9 85613284 85613284 C T RASEF Missense_Mutation p.E601K 0.06 deleterious(0.02) benign(0.163) TCGA-EE-A3JD-06 9 85613350 85613350 G A RASEF Nonsense_Mutation p.Q579* 0.05 TCGA-EE-A3JD-06 9 86912889 86912889 G A SLC28A3 Missense_Mutation p.L239F 0.08 tolerated(0.39) benign(0.248) TCGA-EE-A3JD-06 9 90500585 90500585 G A SPATA31E1 Missense_Mutation p.G395R 0.06 deleterious(0.01) possibly_damaging(0.88) TCGA-EE-A3JD-06 9 90502271 90502271 G A SPATA31E1 Missense_Mutation p.G957R 0.09 tolerated(0.23) benign(0.009) TCGA-EE-A3JD-06 9 91616643 91616643 G A S1PR3 Nonsense_Mutation p.W176* 0.12 TCGA-EE-A3JD-06 9 91994241 91994241 G A SEMA4D Missense_Mutation p.P656L 0.08 tolerated(0.07) benign(0.014) TCGA-EE-A3JD-06 9 95076677 95076677 T A NOL8 Missense_Mutation p.N744Y 0.08 deleterious(0.04) possibly_damaging(0.492) TCGA-EE-A3JD-06 9 95142075 95142075 T G CENPP Missense_Mutation p.F166L 0.06 deleterious(0) benign(0.418) TCGA-EE-A3JD-06 9 96019413 96019413 C T WNK2 Missense_Mutation p.P792S 0.20 unknown(0) TCGA-EE-A3JD-06 9 97207282 97207282 C T HIATL1 Missense_Mutation p.P183S 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 9 98220343 98220343 G A PTCH1 Silent p.F1040F 0.16 TCGA-EE-A3JD-06 9 990276 990276 C T DMRT3 Silent p.L230L 0.11 TCGA-EE-A3JD-06 9 990452 990452 G A DMRT3 Missense_Mutation p.R289Q 0.12 tolerated(0.05) possibly_damaging(0.885) TCGA-EE-A3JD-06 X 100547999 100547999 G A TAF7L Missense_Mutation p.S12L 0.14 tolerated(0.94) benign(0.011) TCGA-EE-A3JD-06 X 100603694 100603694 C T TIMM8A 5'UTR 0.17 TCGA-EE-A3JD-06 X 102334163 102334163 C T NXF3 Missense_Mutation p.G455E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 102334967 102334967 C G NXF3 Missense_Mutation p.K342N 0.24 deleterious(0.03) benign(0.418) TCGA-EE-A3JD-06 X 102338566 102338566 C T NXF3 Missense_Mutation p.E136K 0.17 tolerated(1) benign(0.004) TCGA-EE-A3JD-06 X 102962307 102962307 C A GLRA4 Nonsense_Mutation p.E407* 0.30 TCGA-EE-A3JD-06 X 103499527 103499527 C T ESX1 Missense_Mutation p.E2K 0.19 deleterious_low_confidence(0.01) benign(0.292) TCGA-EE-A3JD-06 X 103499528 103499528 C T ESX1 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0.03) benign(0.019) TCGA-EE-A3JD-06 X 105139435 105139435 C T NRK Missense_Mutation p.H167Y 0.09 tolerated(0.05) possibly_damaging(0.531) TCGA-EE-A3JD-06 X 105449724 105449724 G A MUM1L1 Missense_Mutation p.R100K 0.09 tolerated(0.15) benign(0.006) TCGA-EE-A3JD-06 X 105876359 105876359 G A CXorf57 Splice_Site p.X394_splice 0.16 TCGA-EE-A3JD-06 X 107977073 107977073 T C IRS4 Silent p.G834G 0.17 TCGA-EE-A3JD-06 X 110439807 110439807 G A PAK3 Missense_Mutation p.G485E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 110574141 110574141 C T DCX Intron 0.15 TCGA-EE-A3JD-06 X 111155743 111155743 C T TRPC5 Missense_Mutation p.E226K 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 111914427 111914427 C T LHFPL1 Silent p.V64V 0.08 TCGA-EE-A3JD-06 X 114540849 114540849 G A LUZP4 Missense_Mutation p.G141E 0.18 tolerated(0.06) possibly_damaging(0.631) TCGA-EE-A3JD-06 X 125299509 125299509 G A DCAF12L2 Silent p.I133I 0.13 TCGA-EE-A3JD-06 X 125685746 125685746 C T DCAF12L1 Silent p.L282L 0.19 TCGA-EE-A3JD-06 X 12736727 12736727 C T FRMPD4 Missense_Mutation p.S1261L 0.18 tolerated_low_confidence(0.46) benign(0.001) TCGA-EE-A3JD-06 X 128880613 128880613 C T XPNPEP2 Missense_Mutation p.P149L 0.19 deleterious(0.02) benign(0.213) TCGA-EE-A3JD-06 X 129518964 129518964 C T GPR119 Missense_Mutation p.G153E 0.20 tolerated(0.18) benign(0.038) TCGA-EE-A3JD-06 X 130219008 130219008 G A ARHGAP36 Missense_Mutation p.D309N 0.21 deleterious(0.04) possibly_damaging(0.843) TCGA-EE-A3JD-06 X 130415820 130415820 C T IGSF1 Missense_Mutation p.E449K 0.13 tolerated(0.2) probably_damaging(0.998) TCGA-EE-A3JD-06 X 132670237 132670237 T G GPC3 Missense_Mutation p.H576P 0.16 tolerated_low_confidence(0.21) benign(0) TCGA-EE-A3JD-06 X 134986725 134986725 C T SAGE1 Missense_Mutation p.P104S 0.15 tolerated(0.76) possibly_damaging(0.57) TCGA-EE-A3JD-06 X 134988271 134988271 G A SAGE1 Silent p.G181G 0.18 TCGA-EE-A3JD-06 X 134993770 134993770 G A SAGE1 Missense_Mutation p.E727K 0.11 tolerated(1) probably_damaging(0.996) TCGA-EE-A3JD-06 X 135309544 135309544 G A MAP7D3 Nonsense_Mutation p.Q645* 0.31 TCGA-EE-A3JD-06 X 140993283 140993283 C T MAGEC1 Silent p.S31S 0.13 TCGA-EE-A3JD-06 X 140994604 140994604 G A MAGEC1 Missense_Mutation p.G472S 0.11 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-EE-A3JD-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.18 deleterious_low_confidence(0) benign(0.006) TCGA-EE-A3JD-06 X 142596635 142596635 C T SPANXN3 3'UTR 0.16 TCGA-EE-A3JD-06 X 142596669 142596669 G A SPANXN3 Missense_Mutation p.S134F 0.08 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EE-A3JD-06 X 142717256 142717256 C T SLITRK4 Missense_Mutation p.E557K 0.17 deleterious(0.03) benign(0.156) TCGA-EE-A3JD-06 X 150349133 150349133 G A GPR50 Missense_Mutation p.E360K 0.14 tolerated(0.12) benign(0.305) TCGA-EE-A3JD-06 X 150349697 150349697 C T GPR50 Missense_Mutation p.P548S 0.18 tolerated_low_confidence(0.15) benign(0.001) TCGA-EE-A3JD-06 X 150828252 150828252 C T PASD1 Missense_Mutation p.S262F 0.12 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JD-06 X 150828306 150828306 C T PASD1 Missense_Mutation p.P280L 0.10 tolerated(0.1) benign(0.029) TCGA-EE-A3JD-06 X 150832797 150832797 G A PASD1 Missense_Mutation p.G350R 0.31 tolerated(0.35) possibly_damaging(0.45) TCGA-EE-A3JD-06 X 150839561 150839561 G A PASD1 Missense_Mutation p.E375K 0.13 tolerated(0.13) possibly_damaging(0.766) TCGA-EE-A3JD-06 X 150912370 150912370 G A CNGA2 Silent p.E465E 0.21 TCGA-EE-A3JD-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.14 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JD-06 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.22 TCGA-EE-A3JD-06 X 152860004 152860004 C T FAM58A Splice_Site p.X141_splice 0.22 TCGA-EE-A3JD-06 X 153062007 153062007 G A SSR4 Silent p.Q62Q 0.21 TCGA-EE-A3JD-06 X 153069133 153069133 G A PDZD4 Missense_Mutation p.T662I 0.22 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 X 153670591 153670591 C T GDI1 Silent p.P375P 0.13 TCGA-EE-A3JD-06 X 154185423 154185423 G A F8 Missense_Mutation p.P521S 0.21 deleterious(0.03) possibly_damaging(0.794) TCGA-EE-A3JD-06 X 154197700 154197700 C T F8 Silent p.L305L 0.10 TCGA-EE-A3JD-06 X 154250708 154250708 G A F8 Silent p.L40L 0.19 TCGA-EE-A3JD-06 X 154508514 154508514 G A CLIC2 Missense_Mutation p.S169F 0.17 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JD-06 X 155003537 155003537 G A SPRY3 Missense_Mutation p.D2N 0.08 deleterious_low_confidence(0) benign(0.046) TCGA-EE-A3JD-06 X 155233163 155233163 C T IL9R Silent p.I64I 0.06 TCGA-EE-A3JD-06 X 15526477 15526477 A G BMX Translation_Start_Site p.M1? 0.12 deleterious(0) probably_damaging(0.977) TCGA-EE-A3JD-06 X 15646127 15646127 G A TMEM27 Silent p.F212F 0.27 TCGA-EE-A3JD-06 X 16720940 16720940 G A CTPS2 Missense_Mutation p.S29L 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-EE-A3JD-06 X 21444710 21444710 G A CNKSR2 Missense_Mutation p.D54N 0.22 deleterious(0) benign(0.028) TCGA-EE-A3JD-06 X 21624965 21624965 C T CNKSR2 Missense_Mutation p.P705S 0.24 tolerated(0.12) benign(0.222) TCGA-EE-A3JD-06 X 26213207 26213207 C T MAGEB6 3'UTR 0.11 TCGA-EE-A3JD-06 X 27839871 27839871 C T MAGEB10 Missense_Mutation p.P150S 0.27 tolerated(0.42) benign(0.011) TCGA-EE-A3JD-06 X 31089818 31089818 C T FTHL17 Missense_Mutation p.D85N 0.14 tolerated(0.09) benign(0.101) TCGA-EE-A3JD-06 X 3235751 3235751 C T MXRA5 Missense_Mutation p.V1991M 0.22 tolerated(0.07) possibly_damaging(0.867) TCGA-EE-A3JD-06 X 3239094 3239094 C T MXRA5 Silent p.V1544V 0.20 TCGA-EE-A3JD-06 X 3241044 3241044 C T MXRA5 Silent p.K894K 0.13 TCGA-EE-A3JD-06 X 3248730 3248730 G A MXRA5 Silent p.I91I 0.14 TCGA-EE-A3JD-06 X 34149264 34149264 C T FAM47A Missense_Mutation p.E378K 0.20 deleterious(0.04) probably_damaging(0.953) TCGA-EE-A3JD-06 X 34149363 34149363 G A FAM47A Missense_Mutation p.R345C 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A3JD-06 X 34149924 34149924 C T FAM47A Missense_Mutation p.E158K 0.14 tolerated(1) benign(0.001) TCGA-EE-A3JD-06 X 35944284 35944284 G T CXorf22 Missense_Mutation p.G134W 0.19 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 37026697 37026697 C T FAM47C Missense_Mutation p.R72C 0.14 tolerated(0.22) benign(0.082) TCGA-EE-A3JD-06 X 37027582 37027582 C T FAM47C Missense_Mutation p.R367C 0.15 deleterious(0) benign(0.03) TCGA-EE-A3JD-06 X 37029310 37029310 C T FAM47C Missense_Mutation p.L943F 0.23 tolerated(0.14) benign(0.175) TCGA-EE-A3JD-06 X 37029326 37029326 G A FAM47C Missense_Mutation p.G948E 0.23 deleterious(0.02) benign(0.084) TCGA-EE-A3JD-06 X 37587601 37587601 G A XK Silent p.P407P 0.17 TCGA-EE-A3JD-06 X 49071670 49071670 G A CACNA1F Missense_Mutation p.P1169L 0.16 deleterious(0) benign(0.087) TCGA-EE-A3JD-06 X 49958711 49958711 G A AKAP4 Missense_Mutation p.S218F 0.14 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 50350551 50350551 A G SHROOM4 Silent p.G1197G 0.09 TCGA-EE-A3JD-06 X 52825344 52825344 C T SPANXN5 3'UTR 0.22 TCGA-EE-A3JD-06 X 53455228 53455228 C T RIBC1 Intron 0.11 TCGA-EE-A3JD-06 X 54337720 54337720 C T WNK3 Missense_Mutation p.R181Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JD-06 X 54785277 54785277 G A ITIH6 Silent p.I410I 0.17 TCGA-EE-A3JD-06 X 54955730 54955730 G A TRO Missense_Mutation p.G858D 0.15 tolerated(0.09) benign(0.007) TCGA-EE-A3JD-06 X 5821284 5821284 C T NLGN4X Missense_Mutation p.E479K 0.11 tolerated(0.28) benign(0.08) TCGA-EE-A3JD-06 X 64748198 64748198 G A LAS1L Missense_Mutation p.P300S 0.29 tolerated(0.56) benign(0.008) TCGA-EE-A3JD-06 X 68748968 68748968 G A FAM155B Missense_Mutation p.E332K 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-EE-A3JD-06 X 70147388 70147388 G A SLC7A3 Missense_Mutation p.H377Y 0.23 tolerated(0.17) benign(0.021) TCGA-EE-A3JD-06 X 70356760 70356760 C T MED12 Missense_Mutation p.P1811L 0.20 benign(0) TCGA-EE-A3JD-06 X 70775855 70775855 C T OGT Missense_Mutation p.H326Y 0.16 deleterious(0.02) possibly_damaging(0.463) TCGA-EE-A3JD-06 X 72432951 72432951 G A NAP1L2 Missense_Mutation p.R460C 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EE-A3JD-06 X 72433431 72433431 C T NAP1L2 Missense_Mutation p.E300K 0.11 tolerated(0.18) benign(0.025) TCGA-EE-A3JD-06 X 72667089 72667089 G A CDX4 5'Flank 0.17 TCGA-EE-A3JD-06 X 72673412 72673412 C T CDX4 Silent p.L188L 0.27 TCGA-EE-A3JD-06 X 73046120 73046120 C T XIST RNA 0.32 TCGA-EE-A3JD-06 X 73961673 73961673 C T KIAA2022 Missense_Mutation p.E907K 0.20 deleterious(0.05) benign(0.024) TCGA-EE-A3JD-06 X 73963707 73963707 C T KIAA2022 Missense_Mutation p.D229N 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 75650188 75650188 G A MAGEE1 Missense_Mutation p.G622E 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JD-06 X 78216491 78216491 C T P2RY10 Silent p.I158I 0.18 TCGA-EE-A3JD-06 X 78217001 78217001 C T P2RY10 Silent p.L328L 0.15 TCGA-EE-A3JD-06 X 79932528 79932528 T C BRWD3 Silent p.R1663R 0.18 TCGA-EE-A3JD-06 X 84526505 84526505 G A ZNF711 Missense_Mutation p.D653N 0.19 tolerated(0.36) probably_damaging(0.999) TCGA-EE-A3JE-06 10 106849577 106849577 A C SORCS3 Missense_Mutation p.E358A 0.19 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JE-06 10 120907304 120907304 G T SFXN4 Missense_Mutation p.F267L 0.23 tolerated(1) benign(0.002) TCGA-EE-A3JE-06 10 123310941 123310941 C T FGFR2 Missense_Mutation p.E163K 0.16 deleterious(0.05) benign(0.024) TCGA-EE-A3JE-06 10 13642301 13642301 C T PRPF18 Missense_Mutation p.L68F 0.19 tolerated(0.2) benign(0.235) TCGA-EE-A3JE-06 10 21074778 21074778 G A NEBL Silent p.I981I 0.22 TCGA-EE-A3JE-06 10 26490227 26490227 A G MYO3A Missense_Mutation p.K1527E 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3JE-06 10 33469204 33469204 G A NRP1 Missense_Mutation p.L858F 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JE-06 10 33469205 33469205 G A NRP1 Silent p.I857I 0.14 TCGA-EE-A3JE-06 10 46960014 46960014 C T SYT15 3'Flank 0.09 TCGA-EE-A3JE-06 10 55943256 55943256 G A PCDH15 Missense_Mutation p.S513F 0.10 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JE-06 10 70644563 70644563 C T STOX1 Silent p.F337F 0.13 TCGA-EE-A3JE-06 10 87482861 87482861 G A GRID1 Silent p.I632I 0.12 TCGA-EE-A3JE-06 10 87628917 87628917 G A GRID1 Silent p.I267I 0.13 TCGA-EE-A3JE-06 10 89692971 89692972 - A PTEN Frame_Shift_Ins p.D153Rfs*27 0.09 TCGA-EE-A3JE-06 10 90431601 90431601 C T LIPF Missense_Mutation p.S193F 0.17 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JE-06 10 91066196 91066196 T A IFIT2 Missense_Mutation p.F161L 0.11 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JE-06 11 103059271 103059271 G A DYNC2H1 Missense_Mutation p.G2396S 0.07 benign(0.06) TCGA-EE-A3JE-06 11 103059315 103059315 A T DYNC2H1 Silent p.G2410G 0.09 TCGA-EE-A3JE-06 11 105804641 105804641 G A GRIA4 Missense_Mutation p.G747E 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-EE-A3JE-06 11 111896990 111896990 G A DLAT Silent p.G116G 0.10 TCGA-EE-A3JE-06 11 113816831 113816831 C T HTR3B Missense_Mutation p.S433F 0.10 tolerated(0.15) possibly_damaging(0.839) TCGA-EE-A3JE-06 11 116729109 116729109 C T SIK3 Silent p.R918R 0.08 TCGA-EE-A3JE-06 11 116729110 116729110 C T SIK3 Missense_Mutation p.R918Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.686) TCGA-EE-A3JE-06 11 117391953 117391953 C T DSCAML1 Missense_Mutation p.E429K 0.10 tolerated(0.07) possibly_damaging(0.832) TCGA-EE-A3JE-06 11 119206803 119206803 G A RNF26 Missense_Mutation p.R324K 0.08 tolerated(0.94) benign(0.021) TCGA-EE-A3JE-06 11 120292521 120292521 C T ARHGEF12 Missense_Mutation p.A103V 0.11 deleterious(0) probably_damaging(0.936) TCGA-EE-A3JE-06 11 123777236 123777236 G A OR8D4 Missense_Mutation p.G33E 0.18 tolerated(0.05) possibly_damaging(0.807) TCGA-EE-A3JE-06 11 124618311 124618311 C T VSIG2 Missense_Mutation p.E276K 0.15 tolerated(0.11) benign(0.282) TCGA-EE-A3JE-06 11 125300032 125300032 C T PKNOX2 Missense_Mutation p.P396L 0.09 deleterious_low_confidence(0.03) benign(0.003) TCGA-EE-A3JE-06 11 130343086 130343086 C T ADAMTS15 Silent p.F741F 0.08 TCGA-EE-A3JE-06 11 19914094 19914094 C T NAV2 Silent p.S318S 0.12 TCGA-EE-A3JE-06 11 22249077 22249077 T G ANO5 Missense_Mutation p.L198R 0.11 tolerated(0.37) probably_damaging(0.999) TCGA-EE-A3JE-06 11 22777399 22777399 G A GAS2 Missense_Mutation p.R208Q 0.12 tolerated(0.26) benign(0.001) TCGA-EE-A3JE-06 11 34175913 34175913 C T ABTB2 Missense_Mutation p.A927T 0.17 deleterious(0) possibly_damaging(0.741) TCGA-EE-A3JE-06 11 47830020 47830020 G T NUP160 Missense_Mutation p.P768H 0.08 tolerated(0.58) benign(0.003) TCGA-EE-A3JE-06 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.15 tolerated(0.09) benign(0.141) TCGA-EE-A3JE-06 11 55135721 55135721 C T OR4A15 Missense_Mutation p.S121F 0.13 deleterious_low_confidence(0.01) benign(0.203) TCGA-EE-A3JE-06 11 61205149 61205149 C T SDHAF2 Missense_Mutation p.S30L 0.10 tolerated(0.42) benign(0.024) TCGA-EE-A3JE-06 11 62298311 62298311 G A AHNAK Missense_Mutation p.P1193L 0.10 probably_damaging(1) TCGA-EE-A3JE-06 11 65124093 65124093 G A TIGD3 Missense_Mutation p.E272K 0.15 tolerated(0.51) benign(0.004) TCGA-EE-A3JE-06 11 66299205 66299209 ATCAT - BBS1 Frame_Shift_Del p.I563Qfs*36 0.08 TCGA-EE-A3JE-06 11 67187009 67187009 C T CARNS1 Silent p.L302L 0.24 TCGA-EE-A3JE-06 11 73997013 73997013 G A P4HA3 Silent p.I317I 0.11 TCGA-EE-A3JE-06 11 7960551 7960551 C T OR10A3 Missense_Mutation p.E173K 0.09 tolerated(0.82) benign(0.042) TCGA-EE-A3JE-06 12 100496628 100496628 T A UHRF1BP1L Missense_Mutation p.D85V 0.13 deleterious(0) probably_damaging(0.939) TCGA-EE-A3JE-06 12 101801427 101801427 G A ARL1 5'UTR 0.13 TCGA-EE-A3JE-06 12 124332625 124332625 G A DNAH10 Missense_Mutation p.E1860K 0.21 probably_damaging(0.999) TCGA-EE-A3JE-06 12 12629865 12629865 C T DUSP16 Missense_Mutation p.E634K 0.12 deleterious(0) possibly_damaging(0.889) TCGA-EE-A3JE-06 12 19422703 19422703 G A PLEKHA5 Splice_Site p.X238_splice 0.08 TCGA-EE-A3JE-06 12 31249577 31249577 G A DDX11 Missense_Mutation p.G510R 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3JE-06 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.13 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JE-06 12 46231200 46231200 G C ARID2 Missense_Mutation p.G374R 0.11 deleterious(0.02) probably_damaging(0.921) TCGA-EE-A3JE-06 12 46243878 46243878 C T ARID2 Nonsense_Mutation p.Q658* 0.09 TCGA-EE-A3JE-06 12 49582837 49582837 T C TUBA1A 5'UTR 0.10 TCGA-EE-A3JE-06 12 53647064 53647064 G A MFSD5 Missense_Mutation p.E256K 0.15 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JE-06 12 54797093 54797093 G A ITGA5 Nonsense_Mutation p.R598* 0.11 TCGA-EE-A3JE-06 12 5603796 5603796 A G NTF3 Missense_Mutation p.Y152C 0.17 tolerated(0.08) possibly_damaging(0.737) TCGA-EE-A3JE-06 12 64202701 64202701 G A TMEM5 Silent p.K387K 0.11 TCGA-EE-A3JE-06 12 67699410 67699410 C T CAND1 Silent p.I654I 0.09 TCGA-EE-A3JE-06 12 67699411 67699411 C T CAND1 Missense_Mutation p.L655F 0.09 deleterious(0.03) probably_damaging(0.989) TCGA-EE-A3JE-06 12 68717015 68717015 G A MDM1 Silent p.F213F 0.08 TCGA-EE-A3JE-06 12 94806245 94806245 C G CCDC41 Missense_Mutation p.D8H 0.09 tolerated_low_confidence(0.06) benign(0.226) TCGA-EE-A3JE-06 13 103504564 103504564 T C BIVM-ERCC5 Missense_Mutation p.L488P 0.05 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JE-06 13 103698439 103698439 T A SLC10A2 3'UTR 0.24 TCGA-EE-A3JE-06 13 21562052 21562052 G A LATS2 Missense_Mutation p.R623W 0.15 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JE-06 13 21562053 21562053 G A LATS2 Silent p.N622N 0.15 TCGA-EE-A3JE-06 13 25255747 25255747 C T ATP12A Silent p.I19I 0.08 TCGA-EE-A3JE-06 13 50055134 50055134 C T SETDB2 Silent p.N358N 0.09 TCGA-EE-A3JE-06 14 20248759 20248759 C T OR4M1 Missense_Mutation p.S93F 0.09 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JE-06 14 24422896 24422896 G A DHRS4 5'UTR 0.50 TCGA-EE-A3JE-06 14 24906411 24906411 G A KHNYN Missense_Mutation p.V653M 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JE-06 14 55903709 55903709 G C TBPL2 Missense_Mutation p.L60V 0.15 tolerated_low_confidence(0.07) benign(0.091) TCGA-EE-A3JE-06 14 71485730 71485730 C T PCNX Missense_Mutation p.R1001C 0.13 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JE-06 14 80327989 80327989 C T NRXN3 Intron 0.11 TCGA-EE-A3JE-06 14 81610190 81610190 C T TSHR Silent p.I596I 0.14 TCGA-EE-A3JE-06 14 95088720 95088720 G A SERPINA3 Silent p.R320R 0.14 TCGA-EE-A3JE-06 14 95088721 95088721 G A SERPINA3 Missense_Mutation p.D321N 0.14 tolerated(0.36) benign(0.004) TCGA-EE-A3JE-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.07 deleterious(0) probably_damaging(0.931) TCGA-EE-A3JE-06 15 49118324 49118324 C T SHC4 Splice_Site p.X580_splice 0.20 TCGA-EE-A3JE-06 15 56390316 56390316 A G RFX7 Missense_Mutation p.I357T 0.05 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JE-06 15 66034088 66034088 G A DENND4A Missense_Mutation p.S199L 0.17 deleterious(0) possibly_damaging(0.85) TCGA-EE-A3JE-06 15 74654105 74654105 G A CYP11A1 Intron 0.13 TCGA-EE-A3JE-06 15 74654106 74654106 G A CYP11A1 Intron 0.13 TCGA-EE-A3JE-06 15 74963798 74963798 G A EDC3 Missense_Mutation p.S161F 0.14 deleterious(0) possibly_damaging(0.753) TCGA-EE-A3JE-06 15 92647683 92647683 G A SLCO3A1 Missense_Mutation p.R307K 0.11 tolerated(1) benign(0.006) TCGA-EE-A3JE-06 16 1706284 1706284 C T CRAMP1L Missense_Mutation p.P509L 0.25 tolerated_low_confidence(0.36) benign(0.005) TCGA-EE-A3JE-06 16 20681188 20681188 G A ACSM1 Silent p.I291I 0.10 TCGA-EE-A3JE-06 16 21069510 21069510 C T DNAH3 Missense_Mutation p.R1274Q 0.10 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JE-06 16 23464251 23464251 C T COG7 Missense_Mutation p.R22K 0.08 tolerated(0.58) benign(0.005) TCGA-EE-A3JE-06 16 24578597 24578597 C T RBBP6 Missense_Mutation p.P575S 0.12 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-EE-A3JE-06 16 27476016 27476016 G A GTF3C1 Nonsense_Mutation p.Q1833* 0.06 TCGA-EE-A3JE-06 16 2815745 2815745 C T SRRM2 Missense_Mutation p.S1739L 0.11 unknown(0) TCGA-EE-A3JE-06 16 31106776 31106776 C G VKORC1 5'Flank 0.12 TCGA-EE-A3JE-06 16 46697009 46697009 C T VPS35 Silent p.L571L 0.17 TCGA-EE-A3JE-06 16 50138978 50138978 C T HEATR3 3'UTR 0.13 TCGA-EE-A3JE-06 16 51172617 51172617 C T SALL1 Silent p.T1172T 0.12 TCGA-EE-A3JE-06 16 55523723 55523723 C T MMP2 Silent p.F389F 0.35 TCGA-EE-A3JE-06 16 56481894 56481894 G A NUDT21 Missense_Mutation p.L42F 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-EE-A3JE-06 16 56667771 56667771 C T MT1M 3'UTR 0.14 TCGA-EE-A3JE-06 16 56997015 56997015 A G CETP Missense_Mutation p.Q71R 0.08 tolerated(0.47) benign(0.001) TCGA-EE-A3JE-06 16 68225518 68225518 C T NFATC3 Silent p.G982G 0.06 TCGA-EE-A3JE-06 16 68225519 68225519 C T NFATC3 Nonsense_Mutation p.Q983* 0.06 TCGA-EE-A3JE-06 16 71668679 71668679 G A MARVELD3 Intron 0.09 TCGA-EE-A3JE-06 16 72188248 72188248 G A PMFBP1 Silent p.V92V 0.10 TCGA-EE-A3JE-06 16 84229942 84229942 G A ADAD2 Missense_Mutation p.V580I 0.10 tolerated(0.14) possibly_damaging(0.755) TCGA-EE-A3JE-06 16 90023927 90023927 C T DEF8 Silent p.F138F 0.24 TCGA-EE-A3JE-06 17 10411809 10411809 C T MYH1 Missense_Mutation p.D590N 0.07 deleterious(0.03) benign(0.051) TCGA-EE-A3JE-06 17 10411810 10411810 C T MYH1 Silent p.V589V 0.08 TCGA-EE-A3JE-06 17 1183460 1183460 G A TUSC5 Silent p.Q55Q 0.09 TCGA-EE-A3JE-06 17 16342904 16342904 C T TRPV2 3'Flank 0.19 TCGA-EE-A3JE-06 17 16342905 16342905 C T TRPV2 3'Flank 0.20 TCGA-EE-A3JE-06 17 26727669 26727669 G A SLC46A1 Missense_Mutation p.L427F 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-EE-A3JE-06 17 40328133 40328133 G A KCNH4 Silent p.T256T 0.14 TCGA-EE-A3JE-06 17 42290269 42290269 G A UBTF Missense_Mutation p.S193L 0.12 deleterious(0.01) benign(0.19) TCGA-EE-A3JE-06 17 61557804 61557804 C T ACE Silent p.L254L 0.11 TCGA-EE-A3JE-06 17 72584873 72584873 C T CD300LD Silent p.R52R 0.15 TCGA-EE-A3JE-06 17 74099764 74099764 G A EXOC7 Missense_Mutation p.P4S 0.19 tolerated_low_confidence(0.7) benign(0.009) TCGA-EE-A3JE-06 17 74099765 74099765 G A EXOC7 Silent p.P3P 0.21 TCGA-EE-A3JE-06 17 7758414 7758414 C G TMEM88 Missense_Mutation p.Q8E 0.12 tolerated(0.97) benign(0.009) TCGA-EE-A3JE-06 17 80045901 80045901 G A FASN Missense_Mutation p.S932F 0.20 deleterious(0.01) benign(0.325) TCGA-EE-A3JE-06 17 8706573 8706573 C T PIK3R6 3'UTR 0.14 TCGA-EE-A3JE-06 18 10696234 10696234 G A PIEZO2 Missense_Mutation p.P2230L 0.11 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JE-06 18 12264450 12264450 C T CIDEA Missense_Mutation p.P110S 0.11 deleterious(0.04) possibly_damaging(0.555) TCGA-EE-A3JE-06 18 12699056 12699056 G A CEP76 Missense_Mutation p.R148C 0.17 deleterious(0.01) benign(0.067) TCGA-EE-A3JE-06 18 21181252 21181252 G A ANKRD29 Silent p.L282L 0.12 TCGA-EE-A3JE-06 18 54814757 54814757 C T BOD1L2 Silent p.L72L 0.13 TCGA-EE-A3JE-06 18 72186305 72186305 C T CNDP2 Silent p.A444A 0.14 TCGA-EE-A3JE-06 18 9258025 9258025 C T ANKRD12 Missense_Mutation p.S1587L 0.17 tolerated_low_confidence(0.65) benign(0.003) TCGA-EE-A3JE-06 19 16034661 16034661 G A CYP4F11 Silent p.S293S 0.11 TCGA-EE-A3JE-06 19 18330170 18330170 A T PDE4C Silent p.A280A 0.05 TCGA-EE-A3JE-06 19 24102082 24102082 A T ZNF726 Intron 0.17 TCGA-EE-A3JE-06 19 2733194 2733194 G A SLC39A3 Missense_Mutation p.P167L 0.22 deleterious(0) probably_damaging(0.978) TCGA-EE-A3JE-06 19 30935385 30935385 G A ZNF536 Missense_Mutation p.D306N 0.08 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A3JE-06 19 34859581 34859581 C T GPI Silent p.L165L 0.07 TCGA-EE-A3JE-06 19 36594428 36594428 C T WDR62 Missense_Mutation p.S1233F 0.09 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JE-06 19 42270196 42270196 G A CEACAM6 3'UTR 0.14 TCGA-EE-A3JE-06 19 45494147 45494147 C T CLPTM1 Silent p.L455L 0.15 TCGA-EE-A3JE-06 19 46998437 46998437 G A PNMAL2 Missense_Mutation p.R96C 0.11 deleterious(0.04) benign(0.007) TCGA-EE-A3JE-06 19 46998438 46998438 G A PNMAL2 Silent p.D95D 0.11 TCGA-EE-A3JE-06 19 48640919 48640919 C T LIG1 Missense_Mutation p.E372K 0.10 deleterious(0.01) possibly_damaging(0.647) TCGA-EE-A3JE-06 19 50792717 50792717 C G MYH14 Missense_Mutation p.R1593G 0.18 deleterious(0) possibly_damaging(0.902) TCGA-EE-A3JE-06 19 51728677 51728677 G A CD33 Missense_Mutation p.E81K 0.13 tolerated(1) benign(0.017) TCGA-EE-A3JE-06 19 52133153 52133153 G A SIGLEC5 Silent p.F118F 0.09 TCGA-EE-A3JE-06 19 52658648 52658648 G A ZNF836 Missense_Mutation p.S763L 0.10 deleterious(0) benign(0.06) TCGA-EE-A3JE-06 19 55589497 55589497 G A EPS8L1 Splice_Site p.X20_splice 0.19 TCGA-EE-A3JE-06 19 56300216 56300216 G A NLRP11 Missense_Mutation p.L938F 0.06 deleterious(0.03) possibly_damaging(0.843) TCGA-EE-A3JE-06 19 758344 758344 C T MISP Silent p.S466S 0.15 TCGA-EE-A3JE-06 19 7794311 7794311 C T CLEC4G Missense_Mutation p.D275N 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-EE-A3JE-06 19 7805766 7805766 G A CD209 3'UTR 0.07 TCGA-EE-A3JE-06 19 9056625 9056625 G A MUC16 Missense_Mutation p.S10274F 0.13 possibly_damaging(0.683) TCGA-EE-A3JE-06 1 104117928 104117928 G A AMY2B Missense_Mutation p.G321E 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 1 113246331 113246331 G A RHOC Missense_Mutation p.P31S 0.15 deleterious(0.01) possibly_damaging(0.661) TCGA-EE-A3JE-06 1 114340452 114340452 G A RSBN1 Missense_Mutation p.L304F 0.12 tolerated_low_confidence(0.24) benign(0.024) TCGA-EE-A3JE-06 1 114454684 114454684 C T DCLRE1B Silent p.T490T 0.09 TCGA-EE-A3JE-06 1 11577549 11577549 C T PTCHD2 Silent p.F593F 0.10 TCGA-EE-A3JE-06 1 118166042 118166042 C T FAM46C Silent p.F184F 0.10 TCGA-EE-A3JE-06 1 120306986 120306986 G A HMGCS2 Missense_Mutation p.S123F 0.12 deleterious(0) probably_damaging(0.959) TCGA-EE-A3JE-06 1 120935902 120935902 C T FCGR1B 5'UTR 0.10 TCGA-EE-A3JE-06 1 1309541 1309541 C T AURKAIP1 Missense_Mutation p.E113K 0.11 tolerated(0.42) benign(0.009) TCGA-EE-A3JE-06 1 14106220 14106220 C T PRDM2 Missense_Mutation p.P644S 0.21 probably_damaging(1) TCGA-EE-A3JE-06 1 154966129 154966129 C T LENEP Missense_Mutation p.L16F 0.10 tolerated_low_confidence(0.34) benign(0) TCGA-EE-A3JE-06 1 155007182 155007182 A G DCST1 Missense_Mutation p.M81V 0.11 tolerated(1) benign(0) TCGA-EE-A3JE-06 1 158326598 158326598 C T CD1E Missense_Mutation p.S360L 0.12 tolerated(0.1) benign(0.445) TCGA-EE-A3JE-06 1 165624765 165624765 C T MGST3 3'UTR 0.35 TCGA-EE-A3JE-06 1 167343473 167343473 C T POU2F1 Silent p.S177S 0.15 TCGA-EE-A3JE-06 1 176734924 176734924 G A PAPPA2 Missense_Mutation p.R1425K 0.12 tolerated(0.34) benign(0.004) TCGA-EE-A3JE-06 1 185964144 185964144 G A HMCN1 Missense_Mutation p.D1235N 0.12 probably_damaging(0.998) TCGA-EE-A3JE-06 1 186277995 186277995 G A PRG4 Silent p.T1048T 0.17 TCGA-EE-A3JE-06 1 197019883 197019883 C T F13B Missense_Mutation p.G561E 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 1 198691544 198691544 G A PTPRC Splice_Site p.X554_splice 0.09 TCGA-EE-A3JE-06 1 198691545 198691545 G A PTPRC Missense_Mutation p.A554T 0.09 deleterious(0) benign(0.027) TCGA-EE-A3JE-06 1 205130488 205130488 C T DSTYK Missense_Mutation p.E616K 0.10 tolerated(0.07) possibly_damaging(0.566) TCGA-EE-A3JE-06 1 205238205 205238205 T G TMCC2 Missense_Mutation p.L292R 0.07 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JE-06 1 208257771 208257771 G A PLXNA2 Missense_Mutation p.P751L 0.12 deleterious(0.01) benign(0.1) TCGA-EE-A3JE-06 1 212533979 212533979 G C PPP2R5A Splice_Site p.X443_splice 0.08 TCGA-EE-A3JE-06 1 214815371 214815371 G A CENPF Silent p.E1230E 0.13 TCGA-EE-A3JE-06 1 215847907 215847907 G A USH2A Missense_Mutation p.S4449F 0.11 possibly_damaging(0.722) TCGA-EE-A3JE-06 1 21807433 21807433 G A NBPF3 Silent p.K464K 0.05 TCGA-EE-A3JE-06 1 223568659 223568659 C T C1orf65 Silent p.L614L 0.13 TCGA-EE-A3JE-06 1 227216516 227216516 G A CDC42BPA Missense_Mutation p.S1390L 0.10 deleterious(0.01) benign(0.016) TCGA-EE-A3JE-06 1 24413146 24413146 G A MYOM3 Missense_Mutation p.R596W 0.05 deleterious(0.01) possibly_damaging(0.462) TCGA-EE-A3JE-06 1 34102012 34102012 G A CSMD2 Silent p.I1599I 0.17 TCGA-EE-A3JE-06 1 34401498 34401498 C T CSMD2 Missense_Mutation p.G152D 0.15 deleterious(0.02) possibly_damaging(0.651) TCGA-EE-A3JE-06 1 38226909 38226909 C G EPHA10 Intron 0.11 TCGA-EE-A3JE-06 1 39800890 39800890 C T MACF1 Intron 0.16 TCGA-EE-A3JE-06 1 44070930 44070930 C G PTPRF Missense_Mutation p.P1069A 0.12 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JE-06 1 44070931 44070931 C T PTPRF Missense_Mutation p.P1069L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JE-06 1 44134855 44134855 C T KDM4A Silent p.P416P 0.10 TCGA-EE-A3JE-06 1 45475072 45475072 G T HECTD3 Missense_Mutation p.L320M 0.12 tolerated(0.15) possibly_damaging(0.572) TCGA-EE-A3JE-06 1 45475073 45475073 G A HECTD3 Silent p.N319N 0.12 TCGA-EE-A3JE-06 1 62330219 62330219 G A INADL Missense_Mutation p.E917K 0.11 tolerated(0.16) benign(0.009) TCGA-EE-A3JE-06 1 65142646 65142646 C T CACHD1 Missense_Mutation p.A964V 0.15 tolerated(0.28) benign(0.006) TCGA-EE-A3JE-06 1 66075721 66075721 G A LEPR Missense_Mutation p.R615K 0.09 tolerated(0.14) benign(0.066) TCGA-EE-A3JE-06 1 9640068 9640068 C G SLC25A33 Missense_Mutation p.T180S 0.13 tolerated(0.24) benign(0.099) TCGA-EE-A3JE-06 1 9640069 9640069 C T SLC25A33 Silent p.T180T 0.13 TCGA-EE-A3JE-06 20 18432572 18432572 G A DZANK1 Intron 0.15 TCGA-EE-A3JE-06 20 23066584 23066584 C T CD93 Silent p.R82R 0.28 TCGA-EE-A3JE-06 20 2575520 2575520 G A TMC2 Missense_Mutation p.R328K 0.12 deleterious(0.04) possibly_damaging(0.9) TCGA-EE-A3JE-06 20 31671217 31671217 C T BPIFB4 Missense_Mutation p.P72S 0.11 deleterious_low_confidence(0) benign(0.424) TCGA-EE-A3JE-06 20 32232248 32232248 G A CBFA2T2 Silent p.E537E 0.18 TCGA-EE-A3JE-06 20 34242197 34242197 A C RBM12 Missense_Mutation p.F350V 0.16 deleterious(0) probably_damaging(0.98) TCGA-EE-A3JE-06 20 39792068 39792068 C T PLCG1 Silent p.F280F 0.09 TCGA-EE-A3JE-06 20 58416519 58416519 G A PHACTR3 Missense_Mutation p.E506K 0.22 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JE-06 20 62174757 62174757 C T SRMS Silent p.R185R 0.13 TCGA-EE-A3JE-06 20 76694 76694 G A DEFB125 Missense_Mutation p.R36K 0.10 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3JE-06 21 43291606 43291606 G A PRDM15 Missense_Mutation p.P180S 0.08 tolerated_low_confidence(0.4) benign(0.001) TCGA-EE-A3JE-06 21 43867333 43867333 G A UBASH3A 3'UTR 0.06 TCGA-EE-A3JE-06 21 46117232 46117232 C T KRTAP10-12 Missense_Mutation p.P39L 0.13 deleterious(0) probably_damaging(0.927) TCGA-EE-A3JE-06 21 46117233 46117233 C T KRTAP10-12 Silent p.P39P 0.13 TCGA-EE-A3JE-06 22 17445656 17445656 C T GAB4 Silent p.P492P 0.12 TCGA-EE-A3JE-06 22 17690466 17690466 C T CECR1 Silent p.R34R 0.14 TCGA-EE-A3JE-06 22 20128799 20128799 C T ZDHHC8 Silent p.P318P 0.14 TCGA-EE-A3JE-06 22 20128800 20128800 C T ZDHHC8 Missense_Mutation p.P319S 0.13 deleterious(0.01) benign(0.392) TCGA-EE-A3JE-06 22 22599458 22599458 C T VPREB1 Silent p.I49I 0.14 TCGA-EE-A3JE-06 22 30403950 30403950 T G MTMR3 Missense_Mutation p.L313W 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 22 32009698 32009698 G A SFI1 Silent p.R951R 0.22 TCGA-EE-A3JE-06 22 45278977 45278977 C T PHF21B Missense_Mutation p.G529S 0.10 tolerated_low_confidence(0.13) benign(0.029) TCGA-EE-A3JE-06 22 45278978 45278978 C T PHF21B Silent p.Q528Q 0.09 TCGA-EE-A3JE-06 22 45798252 45798252 A C SMC1B Missense_Mutation p.M272R 0.07 tolerated(0.69) benign(0.001) TCGA-EE-A3JE-06 2 107041192 107041192 C T RGPD3 Nonsense_Mutation p.W1077* 0.06 TCGA-EE-A3JE-06 2 110936067 110936067 G A NPHP1 Missense_Mutation p.L88F 0.08 tolerated(0.1) probably_damaging(0.94) TCGA-EE-A3JE-06 2 116283490 116283490 C T DPP10 Missense_Mutation p.S132L 0.14 deleterious(0.04) possibly_damaging(0.511) TCGA-EE-A3JE-06 2 127453655 127453655 C T GYPC Silent p.A108A 0.10 TCGA-EE-A3JE-06 2 149227047 149227047 C T MBD5 Missense_Mutation p.S512F 0.07 tolerated(0.71) benign(0.354) TCGA-EE-A3JE-06 2 155711304 155711304 C T KCNJ3 Missense_Mutation p.P329S 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A3JE-06 2 175346399 175346399 A C GPR155 Missense_Mutation p.S96A 0.07 tolerated(0.2) benign(0.012) TCGA-EE-A3JE-06 2 189858774 189858774 G A COL3A1 Missense_Mutation p.G387E 0.11 unknown(0) TCGA-EE-A3JE-06 2 1906872 1906872 G A MYT1L Missense_Mutation p.S669F 0.06 deleterious(0) possibly_damaging(0.894) TCGA-EE-A3JE-06 2 1906873 1906873 A T MYT1L Missense_Mutation p.S669T 0.06 deleterious(0.03) benign(0.438) TCGA-EE-A3JE-06 2 21251284 21251284 G A APOB Missense_Mutation p.P582S 0.07 possibly_damaging(0.842) TCGA-EE-A3JE-06 2 227920757 227920757 G A COL4A4 Missense_Mutation p.L874F 0.15 unknown(0) TCGA-EE-A3JE-06 2 241808436 241808436 G A AGXT Missense_Mutation p.D52N 0.04 deleterious(0) benign(0.034) TCGA-EE-A3JE-06 2 27360598 27360598 C T C2orf53 Silent p.K200K 0.09 TCGA-EE-A3JE-06 2 27849834 27849834 T G CCDC121 Missense_Mutation p.K440T 0.09 deleterious(0) possibly_damaging(0.568) TCGA-EE-A3JE-06 2 31147071 31147071 C T GALNT14 Missense_Mutation p.E437K 0.09 deleterious(0.01) possibly_damaging(0.615) TCGA-EE-A3JE-06 2 32740645 32740645 G T BIRC6 Missense_Mutation p.L3719F 0.11 probably_damaging(0.996) TCGA-EE-A3JE-06 2 37267538 37267538 C T HEATR5B Missense_Mutation p.E994K 0.05 deleterious(0.02) benign(0.251) TCGA-EE-A3JE-06 2 43924387 43924387 G A PLEKHH2 Missense_Mutation p.G194R 0.06 deleterious(0) possibly_damaging(0.846) TCGA-EE-A3JE-06 2 62228057 62228057 C T COMMD1 Silent p.H134H 0.09 TCGA-EE-A3JE-06 2 68882300 68882300 G A PROKR1 Silent p.E258E 0.08 TCGA-EE-A3JE-06 2 73675893 73675893 C T ALMS1 Missense_Mutation p.P746S 0.04 benign(0.099) TCGA-EE-A3JE-06 2 73675894 73675894 C T ALMS1 Missense_Mutation p.P746L 0.04 benign(0.391) TCGA-EE-A3JE-06 2 89442597 89442597 C T IGKV3-20 5'UTR 0.05 TCGA-EE-A3JE-06 3 10967784 10967784 C T SLC6A11 Silent p.F405F 0.09 TCGA-EE-A3JE-06 3 111312619 111312619 C T ZBED2 Missense_Mutation p.E144K 0.11 deleterious(0) benign(0.197) TCGA-EE-A3JE-06 3 127325561 127325561 C T MCM2 Silent p.F334F 0.12 TCGA-EE-A3JE-06 3 127642062 127642062 G T KBTBD12 Missense_Mutation p.S53I 0.05 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 3 178922366 178922366 T A PIK3CA Missense_Mutation p.S379T 0.16 tolerated(0.21) benign(0.314) TCGA-EE-A3JE-06 3 186572328 186572328 G A ADIPOQ Silent p.Q190Q 0.12 TCGA-EE-A3JE-06 3 194061987 194061987 G A CPN2 Missense_Mutation p.T482I 0.13 deleterious(0.05) benign(0.141) TCGA-EE-A3JE-06 3 38783809 38783809 G A SCN10A Silent p.F693F 0.07 TCGA-EE-A3JE-06 3 3886713 3886713 C T LRRN1 Nonsense_Mutation p.Q130* 0.06 TCGA-EE-A3JE-06 3 38936084 38936084 G T SCN11A Missense_Mutation p.D925E 0.18 tolerated(0.08) possibly_damaging(0.882) TCGA-EE-A3JE-06 3 48604435 48604435 A G COL7A1 Missense_Mutation p.F2711L 0.21 benign(0.076) TCGA-EE-A3JE-06 3 55984490 55984490 C T ERC2 Missense_Mutation p.R789Q 0.06 deleterious(0.02) probably_damaging(0.937) TCGA-EE-A3JE-06 3 58064483 58064483 C T FLNB Missense_Mutation p.P194L 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 3 67054126 67054126 G A KBTBD8 Missense_Mutation p.M245I 0.07 tolerated(0.07) benign(0.007) TCGA-EE-A3JE-06 3 69127023 69127023 G A UBA3 Missense_Mutation p.R37C 0.17 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 3 74347318 74347318 C T CNTN3 Missense_Mutation p.G731S 0.11 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JE-06 4 100851674 100851674 C T DNAJB14 Missense_Mutation p.D80N 0.04 tolerated(0.35) benign(0.118) TCGA-EE-A3JE-06 4 11401324 11401324 C T HS3ST1 Nonsense_Mutation p.W102* 0.10 TCGA-EE-A3JE-06 4 120463730 120463730 G A PDE5A Nonsense_Mutation p.R486* 0.06 TCGA-EE-A3JE-06 4 126370225 126370225 G A FAT4 Missense_Mutation p.R2685Q 0.11 benign(0.023) TCGA-EE-A3JE-06 4 126371211 126371211 G A FAT4 Missense_Mutation p.G3014R 0.10 probably_damaging(1) TCGA-EE-A3JE-06 4 128651697 128651697 C T SLC25A31 5'UTR 0.14 TCGA-EE-A3JE-06 4 13603494 13603494 G A BOD1L1 Missense_Mutation p.T1677I 0.03 possibly_damaging(0.717) TCGA-EE-A3JE-06 4 15444216 15444216 C T C1QTNF7 Silent p.F228F 0.05 TCGA-EE-A3JE-06 4 154533475 154533475 C T KIAA0922 Missense_Mutation p.P1164S 0.12 tolerated(1) benign(0.004) TCGA-EE-A3JE-06 4 173730626 173730626 C G GALNTL6 Missense_Mutation p.A223G 0.13 deleterious(0) probably_damaging(0.965) TCGA-EE-A3JE-06 4 2181115 2181115 C T POLN Missense_Mutation p.D367N 0.08 tolerated(0.05) benign(0.265) TCGA-EE-A3JE-06 4 38798510 38798510 G A TLR1 Missense_Mutation p.S648F 0.13 deleterious(0) probably_damaging(0.931) TCGA-EE-A3JE-06 4 39507238 39507238 C T UGDH Missense_Mutation p.R346K 0.14 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JE-06 4 48036946 48036946 G A NIPAL1 Silent p.G170G 0.08 TCGA-EE-A3JE-06 4 48503669 48503669 G A FRYL Nonsense_Mutation p.Q2855* 0.11 TCGA-EE-A3JE-06 4 48503670 48503670 G A FRYL Silent p.N2854N 0.11 TCGA-EE-A3JE-06 4 517460 517460 C T PIGG Silent p.L609L 0.08 TCGA-EE-A3JE-06 4 70620463 70620463 C T SULT1B1 Missense_Mutation p.E68K 0.10 tolerated(0.07) benign(0.125) TCGA-EE-A3JE-06 4 74313303 74313303 C T AFP Missense_Mutation p.P323L 0.06 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 4 98762037 98762037 A G STPG2 Missense_Mutation p.M364T 0.07 tolerated(0.17) benign(0.324) TCGA-EE-A3JE-06 5 133996932 133996932 C T SEC24A Missense_Mutation p.S74F 0.11 tolerated_low_confidence(0.29) benign(0.019) TCGA-EE-A3JE-06 5 13708295 13708295 G A DNAH5 Silent p.S4425S 0.10 TCGA-EE-A3JE-06 5 137600085 137600085 C T GFRA3 Missense_Mutation p.V82I 0.11 tolerated(0.43) benign(0.253) TCGA-EE-A3JE-06 5 137600086 137600086 C T GFRA3 Silent p.S81S 0.11 TCGA-EE-A3JE-06 5 140480653 140480653 G A PCDHB3 Silent p.L140L 0.11 TCGA-EE-A3JE-06 5 140552480 140552480 G A PCDHB7 Missense_Mutation p.G22R 0.09 tolerated_low_confidence(0.35) benign(0.017) TCGA-EE-A3JE-06 5 140574511 140574511 G A PCDHB10 Missense_Mutation p.G796R 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.641) TCGA-EE-A3JE-06 5 140588661 140588661 C T PCDHB12 Missense_Mutation p.S61L 0.06 deleterious_low_confidence(0.05) benign(0.014) TCGA-EE-A3JE-06 5 140588672 140588672 C T PCDHB12 Missense_Mutation p.R65W 0.06 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-EE-A3JE-06 5 140683354 140683354 C A SLC25A2 Missense_Mutation p.G27W 0.08 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 5 149225417 149225417 T A PPARGC1B Missense_Mutation p.S971T 0.07 deleterious(0.04) benign(0.071) TCGA-EE-A3JE-06 5 149563090 149563090 G A CDX1 Silent p.K215K 0.25 TCGA-EE-A3JE-06 5 176821167 176821167 C T SLC34A1 Missense_Mutation p.A382V 0.13 deleterious(0.03) benign(0.279) TCGA-EE-A3JE-06 5 176821168 176821168 C T SLC34A1 Silent p.A382A 0.12 TCGA-EE-A3JE-06 5 21975370 21975370 C T CDH12 Missense_Mutation p.R119K 0.14 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JE-06 5 5239964 5239964 G A ADAMTS16 Missense_Mutation p.D817N 0.11 tolerated(0.27) benign(0.021) TCGA-EE-A3JE-06 5 60067810 60067810 G A ELOVL7 Missense_Mutation p.R59C 0.09 deleterious(0) probably_damaging(0.976) TCGA-EE-A3JE-06 5 73932233 73932233 G A ENC1 Silent p.S26S 0.16 TCGA-EE-A3JE-06 5 79351699 79351699 C T THBS4 Silent p.L128L 0.12 TCGA-EE-A3JE-06 5 89924464 89924464 C T GPR98 Missense_Mutation p.P442S 0.11 possibly_damaging(0.857) TCGA-EE-A3JE-06 5 89970018 89970018 G A GPR98 Missense_Mutation p.D1693N 0.12 probably_damaging(0.956) TCGA-EE-A3JE-06 5 9629306 9629306 C T TAS2R1 Missense_Mutation p.G280E 0.21 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JE-06 6 114274470 114274470 C T HDAC2 Missense_Mutation p.E204K 0.07 deleterious(0.02) possibly_damaging(0.525) TCGA-EE-A3JE-06 6 132031964 132031964 G A CTAGE9 Missense_Mutation p.S65L 0.12 deleterious(0.04) possibly_damaging(0.611) TCGA-EE-A3JE-06 6 135507070 135507070 A C MYB Missense_Mutation p.D18A 0.08 deleterious(0) possibly_damaging(0.894) TCGA-EE-A3JE-06 6 150005367 150005367 G A LATS1 Silent p.S286S 0.05 TCGA-EE-A3JE-06 6 151687610 151687610 G A ZBTB2 Silent p.P197P 0.09 TCGA-EE-A3JE-06 6 154439815 154439815 C T OPRM1 Intron 0.13 TCGA-EE-A3JE-06 6 160239686 160239686 C T PNLDC1 Silent p.I408I 0.07 TCGA-EE-A3JE-06 6 165713883 165713883 C T C6orf118 Silent p.L282L 0.09 TCGA-EE-A3JE-06 6 28194857 28194857 G A ZSCAN9 5'UTR 0.14 TCGA-EE-A3JE-06 6 30640560 30640560 C T DHX16 Missense_Mutation p.G20E 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-EE-A3JE-06 6 30899540 30899540 C A SFTA2 Nonsense_Mutation p.E32* 0.15 TCGA-EE-A3JE-06 6 30899541 30899541 C G SFTA2 Missense_Mutation p.K31N 0.15 deleterious(0.01) benign(0) TCGA-EE-A3JE-06 6 31760888 31760888 C T VARS Missense_Mutation p.G133R 0.11 tolerated_low_confidence(0.36) possibly_damaging(0.521) TCGA-EE-A3JE-06 6 31933652 31933652 C T SKIV2L Silent p.T688T 0.13 TCGA-EE-A3JE-06 6 32164129 32164129 C T NOTCH4 Missense_Mutation p.G1757E 0.15 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 6 32261003 32261003 C T C6orf10 Missense_Mutation p.G483R 0.11 deleterious(0.05) possibly_damaging(0.74) TCGA-EE-A3JE-06 6 32261273 32261273 C T C6orf10 Missense_Mutation p.G393R 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-EE-A3JE-06 6 32362548 32362548 C T BTNL2 Missense_Mutation p.E445K 0.07 deleterious(0) possibly_damaging(0.905) TCGA-EE-A3JE-06 6 38980272 38980272 C T DNAH8 Missense_Mutation p.L4308F 0.18 benign(0.231) TCGA-EE-A3JE-06 6 49604464 49604464 C T RHAG Missense_Mutation p.G21E 0.12 deleterious(0) possibly_damaging(0.731) TCGA-EE-A3JE-06 6 74189658 74189658 G A MTO1 Splice_Site p.X313_splice 0.08 TCGA-EE-A3JE-06 7 100187548 100187548 G A FBXO24 Intron 0.10 TCGA-EE-A3JE-06 7 100701381 100701381 G A MUC17 3'UTR 0.11 TCGA-EE-A3JE-06 7 103141356 103141356 T C RELN Missense_Mutation p.R2835G 0.11 deleterious(0) possibly_damaging(0.515) TCGA-EE-A3JE-06 7 128128196 128128196 C T METTL2B Missense_Mutation p.T217I 0.11 tolerated(0.19) benign(0.049) TCGA-EE-A3JE-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-EE-A3JE-06 7 141491019 141491019 C T TAS2R5 Silent p.I286I 0.10 TCGA-EE-A3JE-06 7 16901068 16901068 C T AGR3 Missense_Mutation p.E103K 0.11 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JE-06 7 2262315 2262315 C T MAD1L1 Silent p.E122E 0.11 TCGA-EE-A3JE-06 7 4815384 4815384 C T AP5Z1 Missense_Mutation p.A13V 0.16 deleterious(0) possibly_damaging(0.831) TCGA-EE-A3JE-06 7 56020869 56020869 C A MRPS17 Intron 0.11 TCGA-EE-A3JE-06 7 76619638 76619638 G A UPK3B Intron 0.08 TCGA-EE-A3JE-06 7 84671598 84671598 C T SEMA3D Missense_Mutation p.D289N 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 7 98609040 98609040 C T TRRAP Missense_Mutation p.P3726L 0.07 probably_damaging(0.926) TCGA-EE-A3JE-06 8 106811112 106811112 C T ZFPM2 Silent p.F300F 0.08 TCGA-EE-A3JE-06 8 12943340 12943340 T C DLC1 Missense_Mutation p.K1523E 0.14 deleterious(0.02) benign(0.066) TCGA-EE-A3JE-06 8 140630483 140630483 C T KCNK9 3'UTR 0.10 TCGA-EE-A3JE-06 8 143999174 143999174 G A CYP11B2 Missense_Mutation p.A28V 0.15 tolerated(0.1) probably_damaging(0.96) TCGA-EE-A3JE-06 8 144808445 144808445 G A FAM83H Silent p.P1062P 0.28 TCGA-EE-A3JE-06 8 144808446 144808446 G A FAM83H Missense_Mutation p.P1062L 0.28 tolerated(0.21) benign(0.018) TCGA-EE-A3JE-06 8 20005148 20005148 G A SLC18A1 Silent p.I432I 0.07 TCGA-EE-A3JE-06 8 35648146 35648146 G A UNC5D 3'Flank 0.15 TCGA-EE-A3JE-06 8 42147786 42147786 C T IKBKB Missense_Mutation p.R105W 0.12 deleterious(0) probably_damaging(1) TCGA-EE-A3JE-06 8 55538745 55538745 C T RP1 Missense_Mutation p.S768F 0.17 tolerated(0.48) benign(0.002) TCGA-EE-A3JE-06 8 57353822 57353822 G A PENK 3'UTR 0.13 TCGA-EE-A3JE-06 8 57353922 57353922 G A PENK Missense_Mutation p.A238V 0.05 tolerated(0.08) benign(0.356) TCGA-EE-A3JE-06 8 75157300 75157300 G A JPH1 Missense_Mutation p.R457C 0.08 deleterious(0.03) probably_damaging(0.978) TCGA-EE-A3JE-06 8 95507125 95507125 G A KIAA1429 Missense_Mutation p.P1535L 0.11 tolerated(0.84) probably_damaging(0.999) TCGA-EE-A3JE-06 9 131669516 131669516 G A LRRC8A Missense_Mutation p.D25N 0.11 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JE-06 9 132630713 132630713 C T USP20 Missense_Mutation p.P374S 0.14 tolerated(0.45) benign(0.093) TCGA-EE-A3JE-06 9 132630714 132630714 C T USP20 Missense_Mutation p.P374L 0.14 tolerated(0.33) possibly_damaging(0.624) TCGA-EE-A3JE-06 9 136915577 136915577 G A BRD3 Silent p.V211V 0.10 TCGA-EE-A3JE-06 9 35101910 35101910 G A STOML2 Silent p.D111D 0.27 TCGA-EE-A3JE-06 9 40773139 40773139 T C ZNF658 Silent p.K712K 0.14 TCGA-EE-A3JE-06 9 72055928 72055928 C T APBA1 Missense_Mutation p.S762N 0.18 deleterious(0.01) probably_damaging(0.963) TCGA-EE-A3JE-06 9 79465513 79465513 G C PRUNE2 Silent p.T70T 0.09 TCGA-EE-A3JE-06 9 86474171 86474171 G A KIF27 Missense_Mutation p.S1017L 0.14 tolerated(0.43) benign(0.005) TCGA-EE-A3JE-06 X 103349556 103349556 C T SLC25A53 Missense_Mutation p.A129T 0.27 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JE-06 X 103349557 103349557 C T SLC25A53 Silent p.E128E 0.25 TCGA-EE-A3JE-06 X 135956422 135956422 G A RBMX Missense_Mutation p.S352F 0.08 deleterious(0.02) possibly_damaging(0.896) TCGA-EE-A3JE-06 X 149013704 149013704 C T MAGEA8 Missense_Mutation p.P220S 0.27 tolerated(0.32) benign(0.26) TCGA-EE-A3JE-06 X 152835130 152835130 C T ATP2B3 Intron 0.19 TCGA-EE-A3JE-06 X 152936406 152936406 C T PNCK Missense_Mutation p.R341K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-EE-A3JE-06 X 3238496 3238496 C T MXRA5 Missense_Mutation p.G1744R 0.24 tolerated(0.07) benign(0.132) TCGA-EE-A3JE-06 X 38271195 38271195 T A OTC Missense_Mutation p.F316L 0.28 deleterious(0) benign(0.182) TCGA-EE-A3JE-06 X 47101088 47101088 G A USP11 Missense_Mutation p.R433Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JE-06 X 50052937 50052937 G A CCNB3 Missense_Mutation p.E590K 0.21 tolerated(1) benign(0) TCGA-EE-A3JE-06 X 55051223 55051223 G A ALAS2 Nonsense_Mutation p.Q78* 0.17 TCGA-EE-A3JE-06 X 57458404 57458404 G A FAAH2 Silent p.L350L 0.21 TCGA-EE-A3JE-06 X 83319312 83319312 C T RPS6KA6 Missense_Mutation p.M737I 0.15 tolerated(0.18) benign(0.002) TCGA-EE-A3JH-06 10 103909754 103909754 T C PPRC1 Silent p.L1655L 0.20 TCGA-EE-A3JH-06 10 125521583 125521583 C T CPXM2 Missense_Mutation p.D528N 0.19 deleterious(0.01) benign(0.316) TCGA-EE-A3JH-06 10 75530502 75530502 G A SEC24C Silent p.K1030K 0.16 TCGA-EE-A3JH-06 10 76739017 76739017 C T KAT6B Silent p.G717G 0.14 TCGA-EE-A3JH-06 10 93691 93691 G A TUBB8 Missense_Mutation p.T214I 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3JH-06 11 103908196 103908196 G A DDI1 Missense_Mutation p.E216K 0.09 deleterious(0.03) possibly_damaging(0.521) TCGA-EE-A3JH-06 11 1094812 1094812 C T MUC2 Missense_Mutation p.P1967L 0.09 unknown(0) TCGA-EE-A3JH-06 11 119044728 119044728 G C NLRX1 Missense_Mutation p.G257A 0.13 tolerated(0.26) benign(0.092) TCGA-EE-A3JH-06 11 17793307 17793307 G A KCNC1 Silent p.T222T 0.08 TCGA-EE-A3JH-06 11 3115487 3115487 G A OSBPL5 Nonsense_Mutation p.Q567* 0.15 TCGA-EE-A3JH-06 11 36511337 36511337 G A TRAF6 3'UTR 0.06 TCGA-EE-A3JH-06 11 45672385 45672385 G A CHST1 Missense_Mutation p.S30F 0.09 tolerated(0.73) benign(0.002) TCGA-EE-A3JH-06 11 48239251 48239251 G A OR4B1 Missense_Mutation p.R297K 0.10 tolerated(0.69) benign(0.014) TCGA-EE-A3JH-06 11 65347927 65347927 C T EHBP1L1 Missense_Mutation p.A204V 0.06 tolerated(0.28) benign(0.015) TCGA-EE-A3JH-06 11 88033712 88033712 G A CTSC Missense_Mutation p.P248L 0.10 deleterious(0) probably_damaging(0.965) TCGA-EE-A3JH-06 12 104048398 104048398 C T STAB2 Silent p.I491I 0.07 TCGA-EE-A3JH-06 12 112676998 112676998 G A HECTD4 Silent p.L1570L 0.15 TCGA-EE-A3JH-06 12 113446901 113446901 C T OAS2 Silent p.I635I 0.15 TCGA-EE-A3JH-06 12 46582704 46582704 G A SLC38A1 3'UTR 0.08 TCGA-EE-A3JH-06 12 52963652 52963652 C T KRT74 Silent p.V375V 0.06 TCGA-EE-A3JH-06 12 57578672 57578672 C T LRP1 Silent p.I2079I 0.11 TCGA-EE-A3JH-06 12 88391952 88391952 T A C12orf50 Missense_Mutation p.K50I 0.19 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JH-06 12 95656847 95656847 C T VEZT Missense_Mutation p.P142S 0.06 tolerated(0.05) possibly_damaging(0.607) TCGA-EE-A3JH-06 13 115090383 115090383 C T CHAMP1 Missense_Mutation p.P356S 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-EE-A3JH-06 13 115090384 115090384 C T CHAMP1 Missense_Mutation p.P356L 0.06 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JH-06 13 24823810 24823810 C T SPATA13 Missense_Mutation p.R617C 0.09 tolerated(0.3) benign(0.001) TCGA-EE-A3JH-06 13 26129185 26129185 C T ATP8A2 Silent p.N414N 0.09 TCGA-EE-A3JH-06 13 61986959 61986959 C T PCDH20 Missense_Mutation p.E425K 0.17 tolerated(0.51) benign(0.017) TCGA-EE-A3JH-06 13 96237103 96237103 C T DZIP1 Missense_Mutation p.G804E 0.10 tolerated(0.52) benign(0.007) TCGA-EE-A3JH-06 14 106208028 106208028 C T IGHG1 Missense_Mutation p.D259N 0.26 tolerated(0.09) possibly_damaging(0.904) TCGA-EE-A3JH-06 14 106322144 106322144 C T IGHM Silent p.L60L 0.17 TCGA-EE-A3JH-06 14 106725652 106725652 C T IGHV3-23 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0.01) benign(0.246) TCGA-EE-A3JH-06 14 107178907 107178907 G A IGHV2-70 Silent p.I90I 0.13 TCGA-EE-A3JH-06 14 20443887 20443887 C T OR4K15 Silent p.I70I 0.14 TCGA-EE-A3JH-06 14 20692607 20692607 C T OR11H6 Missense_Mutation p.P247S 0.16 deleterious(0.03) benign(0.438) TCGA-EE-A3JH-06 14 22337305 22337305 C T TRAV13-1 Silent p.V32V 0.13 TCGA-EE-A3JH-06 14 23863404 23863404 G A MYH6 Missense_Mutation p.T853I 0.18 deleterious(0.04) benign(0.036) TCGA-EE-A3JH-06 14 31642763 31642763 T A HECTD1 Missense_Mutation p.T285S 0.20 deleterious(0.01) possibly_damaging(0.849) TCGA-EE-A3JH-06 14 53513522 53513522 G A DDHD1 Silent p.H889H 0.08 TCGA-EE-A3JH-06 14 59112402 59112402 G A DACT1 Missense_Mutation p.R354K 0.16 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JH-06 14 59112403 59112403 G A DACT1 Silent p.R354R 0.16 TCGA-EE-A3JH-06 14 67389392 67389392 C T GPHN Nonsense_Mutation p.Q156* 0.10 TCGA-EE-A3JH-06 14 95081330 95081330 G A SERPINA3 Silent p.V184V 0.11 TCGA-EE-A3JH-06 14 96178665 96178665 G A TCL1A Silent p.T63T 0.14 TCGA-EE-A3JH-06 14 96922768 96922768 C T AK7 Missense_Mutation p.H395Y 0.10 tolerated(0.13) possibly_damaging(0.768) TCGA-EE-A3JH-06 15 34064264 34064264 C T RYR3 Missense_Mutation p.S2987F 0.17 possibly_damaging(0.866) TCGA-EE-A3JH-06 15 40093419 40093419 G A GPR176 Nonsense_Mutation p.Q488* 0.19 TCGA-EE-A3JH-06 15 42281705 42281705 C T PLA2G4E Missense_Mutation p.G544E 0.12 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JH-06 15 43641177 43641177 C T ADAL Missense_Mutation p.L209F 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3JH-06 15 43873570 43873570 G A PPIP5K1 Missense_Mutation p.P265L 0.16 deleterious(0) probably_damaging(0.967) TCGA-EE-A3JH-06 15 43873571 43873571 G A PPIP5K1 Missense_Mutation p.P265S 0.17 tolerated(0.07) possibly_damaging(0.536) TCGA-EE-A3JH-06 15 65621770 65621770 G A IGDCC3 Silent p.F721F 0.15 TCGA-EE-A3JH-06 15 66774131 66774131 G A MAP2K1 Missense_Mutation p.E203K 0.22 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JH-06 15 75693124 75693124 G T SIN3A Missense_Mutation p.P562T 0.07 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 15 75693210 75693210 T A SIN3A Missense_Mutation p.Y533F 0.10 tolerated(0.75) benign(0) TCGA-EE-A3JH-06 16 21730787 21730787 G A OTOA Missense_Mutation p.D590N 0.07 tolerated(0.22) benign(0.098) TCGA-EE-A3JH-06 16 24135199 24135199 C T PRKCB Missense_Mutation p.T321M 0.17 tolerated(0.18) benign(0.025) TCGA-EE-A3JH-06 16 28328854 28328854 G A SBK1 Missense_Mutation p.D48N 0.21 tolerated(0.06) benign(0.017) TCGA-EE-A3JH-06 16 28877902 28877902 C T SH2B1 Nonsense_Mutation p.R163* 0.15 TCGA-EE-A3JH-06 16 33647359 33647359 C T RP11-812E19.9 Missense_Mutation p.D81N 0.07 tolerated_low_confidence(0.14) possibly_damaging(0.852) TCGA-EE-A3JH-06 16 555569 555569 G A RAB11FIP3 Missense_Mutation p.A481T 0.25 tolerated(0.52) benign(0.017) TCGA-EE-A3JH-06 16 89346628 89346628 C T ANKRD11 Missense_Mutation p.G2108S 0.22 benign(0) TCGA-EE-A3JH-06 17 26115904 26115904 C T NOS2 Silent p.R83R 0.07 TCGA-EE-A3JH-06 17 26874713 26874713 G A UNC119 Missense_Mutation p.P198S 0.14 tolerated(0.48) benign(0.116) TCGA-EE-A3JH-06 17 26874714 26874714 G A UNC119 Silent p.P197P 0.15 TCGA-EE-A3JH-06 17 28651902 28651902 C T TMIGD1 Missense_Mutation p.G191E 0.10 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 17 32483090 32483090 C T ASIC2 Silent p.L154L 0.18 TCGA-EE-A3JH-06 17 3324457 3324457 C T OR3A3 Missense_Mutation p.S199F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JH-06 17 39768903 39768903 G A KRT16 Missense_Mutation p.S13F 0.09 deleterious(0.03) unknown(0) TCGA-EE-A3JH-06 17 4349486 4349486 C T SPNS3 Silent p.P182P 0.04 TCGA-EE-A3JH-06 17 48450558 48450558 G A MRPL27 5'UTR 0.22 TCGA-EE-A3JH-06 17 5048750 5048750 C T USP6 Silent p.F681F 0.15 TCGA-EE-A3JH-06 17 5048751 5048751 C T USP6 Missense_Mutation p.H682Y 0.15 tolerated_low_confidence(0.2) probably_damaging(0.998) TCGA-EE-A3JH-06 17 59485578 59485578 C T TBX2 Missense_Mutation p.P617L 0.14 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JH-06 17 62496834 62496835 - A DDX5 Frame_Shift_Ins p.Y425Lfs*24 0.10 TCGA-EE-A3JH-06 17 726987 726987 C T NXN Missense_Mutation p.G166E 0.09 tolerated(0.22) benign(0.253) TCGA-EE-A3JH-06 17 726988 726988 C T NXN Missense_Mutation p.G166R 0.07 tolerated(0.69) benign(0.438) TCGA-EE-A3JH-06 17 79287763 79287763 C T TMEM105 Silent p.V26V 0.21 TCGA-EE-A3JH-06 17 80789224 80789224 G A ZNF750 Silent p.D369D 0.08 TCGA-EE-A3JH-06 18 32954288 32954288 C A ZNF396 5'UTR 0.10 TCGA-EE-A3JH-06 18 33744557 33744557 G C ELP2 Missense_Mutation p.K692N 0.08 tolerated(0.07) benign(0.023) TCGA-EE-A3JH-06 18 48473491 48473491 C T ME2 Silent p.S564S 0.28 TCGA-EE-A3JH-06 18 50278624 50278624 C T DCC Silent p.L98L 0.11 TCGA-EE-A3JH-06 19 2408369 2408369 G A TMPRSS9 Silent p.T252T 0.25 TCGA-EE-A3JH-06 19 3282252 3282252 C T CELF5 Silent p.I293I 0.23 TCGA-EE-A3JH-06 19 43859822 43859822 C T CD177 3'UTR 0.08 TCGA-EE-A3JH-06 19 56243696 56243696 C T NLRP9 Missense_Mutation p.E501K 0.20 tolerated(0.11) benign(0.063) TCGA-EE-A3JH-06 19 57640501 57640501 C T USP29 Missense_Mutation p.S153L 0.12 tolerated(0.44) probably_damaging(0.922) TCGA-EE-A3JH-06 1 152573553 152573553 G A LCE3C 3'UTR 0.27 TCGA-EE-A3JH-06 1 154317975 154317975 C T ATP8B2 Missense_Mutation p.T916I 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-EE-A3JH-06 1 159899999 159899999 G A IGSF9 Silent p.L682L 0.15 TCGA-EE-A3JH-06 1 159912857 159912857 C T IGSF9 Missense_Mutation p.G48D 0.24 deleterious(0.01) benign(0.097) TCGA-EE-A3JH-06 1 161514743 161514743 G A FCGR3A Silent p.L145L 0.28 TCGA-EE-A3JH-06 1 162769628 162769628 C T HSD17B7 Silent p.L181L 0.28 TCGA-EE-A3JH-06 1 175046756 175046756 G A TNN Missense_Mutation p.D68N 0.29 tolerated(0.33) benign(0.005) TCGA-EE-A3JH-06 1 186648534 186648534 C T PTGS2 Missense_Mutation p.G30D 0.13 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JH-06 1 197391051 197391051 G A CRB1 Missense_Mutation p.C698Y 0.07 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JH-06 1 20412721 20412721 G A PLA2G5 Splice_Site p.X62_splice 0.12 TCGA-EE-A3JH-06 1 204236633 204236633 G A PLEKHA6 Silent p.L84L 0.16 TCGA-EE-A3JH-06 1 206772928 206772928 G A EIF2D Missense_Mutation p.S364F 0.14 deleterious(0.04) possibly_damaging(0.713) TCGA-EE-A3JH-06 1 226050548 226050548 G A TMEM63A Silent p.D250D 0.10 TCGA-EE-A3JH-06 1 22915786 22915786 G A EPHA8 Intron 0.10 TCGA-EE-A3JH-06 1 247040329 247040329 G A AHCTF1 Missense_Mutation p.L963F 0.09 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 1 247769724 247769724 C T OR2G3 Silent p.T279T 0.09 TCGA-EE-A3JH-06 1 248402269 248402269 C T OR2M4 Silent p.I13I 0.12 TCGA-EE-A3JH-06 1 248790279 248790279 G A OR2T11 Missense_Mutation p.R51C 0.22 deleterious(0.03) possibly_damaging(0.507) TCGA-EE-A3JH-06 1 27215604 27215604 G A GPN2 Missense_Mutation p.H142Y 0.10 deleterious(0.03) possibly_damaging(0.501) TCGA-EE-A3JH-06 1 31347210 31347210 C A SDC3 Missense_Mutation p.D366Y 0.16 deleterious(0) unknown(0) TCGA-EE-A3JH-06 1 34174715 34174715 C T CSMD2 Missense_Mutation p.E1144K 0.13 tolerated(0.06) benign(0.166) TCGA-EE-A3JH-06 1 43296766 43296766 C T ERMAP Missense_Mutation p.T138I 0.15 deleterious(0.03) benign(0.055) TCGA-EE-A3JH-06 1 43766712 43766712 G A TIE1 5'UTR 0.09 TCGA-EE-A3JH-06 1 62327290 62327290 C T INADL Missense_Mutation p.S797L 0.12 tolerated(0.18) benign(0.009) TCGA-EE-A3JH-06 1 71418660 71418660 C T PTGER3 Missense_Mutation p.R396K 0.04 tolerated_low_confidence(1) benign(0) TCGA-EE-A3JH-06 1 7861237 7861237 T C PER3 Silent p.L285L 0.08 TCGA-EE-A3JH-06 1 86964337 86964337 C T CLCA1 Silent p.S732S 0.07 TCGA-EE-A3JH-06 20 43752814 43752814 C T WFDC12 Missense_Mutation p.E58K 0.14 tolerated(1) benign(0.003) TCGA-EE-A3JH-06 20 47989612 47989612 C T KCNB1 Missense_Mutation p.E829K 0.10 deleterious_low_confidence(0.05) benign(0.033) TCGA-EE-A3JH-06 20 48700666 48700666 C T UBE2V1 Silent p.V122V 0.12 TCGA-EE-A3JH-06 20 56137870 56137870 G A PCK1 Silent p.R175R 0.11 TCGA-EE-A3JH-06 20 61835092 61835092 G A YTHDF1 Missense_Mutation p.P67L 0.25 deleterious(0) probably_damaging(0.928) TCGA-EE-A3JH-06 20 62655924 62655924 C T PRPF6 Missense_Mutation p.L596F 0.20 deleterious(0.03) possibly_damaging(0.835) TCGA-EE-A3JH-06 20 896915 896915 G A ANGPT4 5'UTR 0.25 TCGA-EE-A3JH-06 22 19211483 19211483 G A CLTCL1 Silent p.I741I 0.16 TCGA-EE-A3JH-06 22 27008142 27008142 C T CRYBB1 Missense_Mutation p.E65K 0.21 deleterious(0) probably_damaging(0.963) TCGA-EE-A3JH-06 22 31266588 31266588 C T OSBP2 Silent p.I342I 0.11 TCGA-EE-A3JH-06 22 31536101 31536101 G A PLA2G3 Silent p.T80T 0.13 TCGA-EE-A3JH-06 22 45404456 45404456 C A PHF21B Missense_Mutation p.Q30H 0.21 tolerated_low_confidence(0.07) benign(0.001) TCGA-EE-A3JH-06 2 108489194 108489194 G A RGPD4 Silent p.L1578L 0.19 TCGA-EE-A3JH-06 2 109463245 109463245 G A CCDC138 Missense_Mutation p.G459R 0.11 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JH-06 2 109463246 109463246 G A CCDC138 Missense_Mutation p.G459E 0.09 deleterious(0) probably_damaging(0.969) TCGA-EE-A3JH-06 2 109539872 109539872 C T EDAR Missense_Mutation p.G132S 0.08 tolerated(0.27) probably_damaging(0.999) TCGA-EE-A3JH-06 2 133539985 133539985 G A NCKAP5 Missense_Mutation p.P1467S 0.30 tolerated(0.07) benign(0.201) TCGA-EE-A3JH-06 2 149226818 149226818 C T MBD5 Missense_Mutation p.P436S 0.12 deleterious(0.04) possibly_damaging(0.803) TCGA-EE-A3JH-06 2 155158006 155158006 C T GALNT13 Missense_Mutation p.P354S 0.11 deleterious(0.05) benign(0.15) TCGA-EE-A3JH-06 2 165953813 165953813 C T SCN3A Silent p.V1396V 0.24 TCGA-EE-A3JH-06 2 166210819 166210819 G A SCN2A Missense_Mutation p.G1013R 0.13 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JH-06 2 171906377 171906377 G T TLK1 Silent p.G309G 0.05 TCGA-EE-A3JH-06 2 179612246 179612246 G A TTN Intron 0.18 TCGA-EE-A3JH-06 2 179616450 179616450 G A TTN Intron 0.15 TCGA-EE-A3JH-06 2 220437094 220437094 G A INHA 5'UTR 0.11 TCGA-EE-A3JH-06 2 228886617 228886617 G A SPHKAP Silent p.N169N 0.18 TCGA-EE-A3JH-06 2 229890687 229890687 G A PID1 Silent p.I136I 0.08 TCGA-EE-A3JH-06 2 231109788 231109788 T G SP140 Silent p.G219G 0.16 TCGA-EE-A3JH-06 2 232576081 232576081 T C PTMA Silent p.V23V 0.09 TCGA-EE-A3JH-06 2 240900532 240900532 C T NDUFA10 3'UTR 0.15 TCGA-EE-A3JH-06 2 241404942 241404942 G A GPC1 Missense_Mutation p.E441K 0.11 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 2 31588407 31588407 G T XDH Silent p.T820T 0.16 TCGA-EE-A3JH-06 2 31593226 31593226 C T XDH Missense_Mutation p.D659N 0.13 tolerated(0.29) benign(0.014) TCGA-EE-A3JH-06 2 71303799 71303799 C T NAGK Missense_Mutation p.H291Y 0.08 tolerated(0.06) possibly_damaging(0.465) TCGA-EE-A3JH-06 2 97366109 97366109 G A FER1L5 RNA 0.14 TCGA-EE-A3JH-06 2 98382600 98382600 A T TMEM131 Missense_Mutation p.V1567D 0.15 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-EE-A3JH-06 3 108572633 108572633 C T TRAT1 Missense_Mutation p.S157F 0.13 deleterious(0.03) possibly_damaging(0.61) TCGA-EE-A3JH-06 3 10861262 10861262 G A SLC6A11 Silent p.R123R 0.15 TCGA-EE-A3JH-06 3 11059590 11059590 G A SLC6A1 Silent p.L100L 0.13 TCGA-EE-A3JH-06 3 129547017 129547017 C T TMCC1 Missense_Mutation p.D69N 0.11 tolerated_low_confidence(0.14) benign(0.012) TCGA-EE-A3JH-06 3 142172041 142172041 C T ATR Missense_Mutation p.E2564K 0.09 deleterious(0) probably_damaging(0.926) TCGA-EE-A3JH-06 3 158383129 158383129 G A GFM1 Missense_Mutation p.D462N 0.20 tolerated(0.1) benign(0.07) TCGA-EE-A3JH-06 3 161220127 161220127 C T OTOL1 Missense_Mutation p.P163S 0.07 deleterious(0.04) unknown(0) TCGA-EE-A3JH-06 3 16217065 16217065 G A GALNT15 Missense_Mutation p.G136E 0.23 tolerated(0.09) benign(0.259) TCGA-EE-A3JH-06 3 16217066 16217066 G A GALNT15 Silent p.G136G 0.24 TCGA-EE-A3JH-06 3 184008435 184008435 C T ECE2 Silent p.F700F 0.11 TCGA-EE-A3JH-06 3 196098779 196098779 G A UBXN7 Silent p.F201F 0.12 TCGA-EE-A3JH-06 3 36873580 36873580 C T TRANK1 Silent p.K2454K 0.15 TCGA-EE-A3JH-06 3 38601810 38601810 C T SCN5A Missense_Mutation p.G1358E 0.13 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 3 44847370 44847370 G A KIF15 Silent p.Q621Q 0.08 TCGA-EE-A3JH-06 3 49722209 49722209 C T MST1 Silent p.G577G 0.12 TCGA-EE-A3JH-06 3 49850559 49850559 C T UBA7 Missense_Mutation p.V135M 0.22 tolerated(0.06) benign(0.363) TCGA-EE-A3JH-06 3 65342720 65342720 G A MAGI1 Missense_Mutation p.S1241L 0.17 deleterious(0) benign(0.407) TCGA-EE-A3JH-06 4 114203843 114203843 C T ANK2 Missense_Mutation p.P632S 0.26 probably_damaging(1) TCGA-EE-A3JH-06 4 169362542 169362542 G A DDX60L Missense_Mutation p.P414S 0.22 tolerated(0.07) probably_damaging(0.964) TCGA-EE-A3JH-06 4 183714413 183714413 C T TENM3 Silent p.F2196F 0.22 TCGA-EE-A3JH-06 4 85660250 85660250 C T WDFY3 Missense_Mutation p.E2163K 0.19 tolerated(0.12) possibly_damaging(0.694) TCGA-EE-A3JH-06 4 85660251 85660251 C T WDFY3 Silent p.L2162L 0.21 TCGA-EE-A3JH-06 5 10973694 10973694 G A CTNND2 Silent p.S1183S 0.18 TCGA-EE-A3JH-06 5 13754425 13754425 C T DNAH5 Missense_Mutation p.R3481Q 0.12 possibly_damaging(0.553) TCGA-EE-A3JH-06 5 140181765 140181765 C T PCDHA3 Missense_Mutation p.P328L 0.04 tolerated_low_confidence(0.33) benign(0.287) TCGA-EE-A3JH-06 5 140480755 140480755 G A PCDHB3 Silent p.P174P 0.08 TCGA-EE-A3JH-06 5 140516182 140516182 C T PCDHB5 Missense_Mutation p.P389L 0.06 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EE-A3JH-06 5 140530763 140530763 G A PCDHB6 Missense_Mutation p.E309K 0.06 tolerated(0.71) benign(0.003) TCGA-EE-A3JH-06 5 140563208 140563208 G A PCDHB16 Silent p.E358E 0.07 TCGA-EE-A3JH-06 5 140794689 140794689 C T PCDHGA10 Silent p.A649A 0.09 TCGA-EE-A3JH-06 5 140866630 140866630 G A PCDHGC4 Silent p.T630T 0.11 TCGA-EE-A3JH-06 5 14488216 14488216 C T TRIO Silent p.P2493P 0.19 TCGA-EE-A3JH-06 5 14488280 14488280 C T TRIO Missense_Mutation p.R2515C 0.16 benign(0.033) TCGA-EE-A3JH-06 5 178551987 178551987 C T ADAMTS2 Missense_Mutation p.G982E 0.12 tolerated(0.05) probably_damaging(1) TCGA-EE-A3JH-06 5 180419923 180419923 C T BTNL3 Missense_Mutation p.R54W 0.06 deleterious(0) possibly_damaging(0.582) TCGA-EE-A3JH-06 5 19483608 19483608 C T CDH18 Missense_Mutation p.D562N 0.10 tolerated(0.38) benign(0.423) TCGA-EE-A3JH-06 5 31995761 31995761 G A PDZD2 Missense_Mutation p.G353E 0.18 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 5 33881430 33881430 T C ADAMTS12 Missense_Mutation p.I95V 0.22 tolerated(0.15) benign(0.388) TCGA-EE-A3JH-06 5 71757314 71757314 C T ZNF366 Missense_Mutation p.E4K 0.09 deleterious_low_confidence(0.03) benign(0.116) TCGA-EE-A3JH-06 5 82815203 82815203 G A VCAN Missense_Mutation p.A360T 0.07 tolerated(0.24) benign(0.048) TCGA-EE-A3JH-06 6 134492024 134492024 G A SGK1 Silent p.S451S 0.07 TCGA-EE-A3JH-06 6 160176365 160176365 T C WTAP Missense_Mutation p.S305P 0.12 tolerated_low_confidence(0.39) benign(0.003) TCGA-EE-A3JH-06 6 24843463 24843463 G A FAM65B Missense_Mutation p.S516F 0.17 tolerated(0.11) possibly_damaging(0.861) TCGA-EE-A3JH-06 6 27222490 27222490 C T PRSS16 Missense_Mutation p.P390L 0.10 tolerated(0.06) benign(0.012) TCGA-EE-A3JH-06 6 29054720 29054720 G A OR2B3 Silent p.I102I 0.13 TCGA-EE-A3JH-06 6 31855918 31855918 G A EHMT2 Missense_Mutation p.P549S 0.10 tolerated(0.23) benign(0.033) TCGA-EE-A3JH-06 6 44253763 44253763 G A TCTE1 Missense_Mutation p.L262F 0.08 deleterious(0.04) possibly_damaging(0.805) TCGA-EE-A3JH-06 6 54735191 54735191 G A FAM83B Silent p.Q49Q 0.08 TCGA-EE-A3JH-06 6 70637889 70637889 C T COL19A1 Silent p.L119L 0.12 TCGA-EE-A3JH-06 6 88768507 88768507 C T SPACA1 Silent p.F147F 0.15 TCGA-EE-A3JH-06 7 100212779 100212779 C T MOSPD3 Silent p.L227L 0.11 TCGA-EE-A3JH-06 7 100482173 100482173 G A SRRT Silent p.Q314Q 0.10 TCGA-EE-A3JH-06 7 101845351 101845351 C T CUX1 Missense_Mutation p.P936L 0.14 deleterious(0) unknown(0) TCGA-EE-A3JH-06 7 128041115 128041115 G A IMPDH1 Missense_Mutation p.S153F 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A3JH-06 7 132193153 132193153 G A PLXNA4 Silent p.I100I 0.19 TCGA-EE-A3JH-06 7 134618619 134618619 G A CALD1 Missense_Mutation p.A367T 0.12 tolerated_low_confidence(0.54) unknown(0) TCGA-EE-A3JH-06 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.15 deleterious(0) benign(0.411) TCGA-EE-A3JH-06 7 142180558 142180558 C A TRBV6-5 Missense_Mutation p.A101S 0.14 tolerated(1) benign(0.034) TCGA-EE-A3JH-06 7 143807033 143807033 G A OR2A2 Missense_Mutation p.D120N 0.11 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JH-06 7 149492394 149492394 C T SSPO RNA 0.08 TCGA-EE-A3JH-06 7 150174541 150174541 G A GIMAP8 Silent p.T557T 0.23 TCGA-EE-A3JH-06 7 150746324 150746324 G A ASIC3 Missense_Mutation p.D118N 0.19 tolerated(0.55) benign(0.12) TCGA-EE-A3JH-06 7 37951872 37951872 C T SFRP4 Missense_Mutation p.V214I 0.10 tolerated(0.59) benign(0.021) TCGA-EE-A3JH-06 7 37951873 37951873 C T SFRP4 Silent p.E213E 0.10 TCGA-EE-A3JH-06 7 47343143 47343143 G A TNS3 Silent p.P954P 0.36 TCGA-EE-A3JH-06 7 53103724 53103724 G A POM121L12 Missense_Mutation p.M120I 0.11 tolerated(0.06) benign(0.216) TCGA-EE-A3JH-06 7 72730583 72730583 G A TRIM50 Silent p.L285L 0.14 TCGA-EE-A3JH-06 7 74197924 74197924 G A NCF1 Missense_Mutation p.E211K 0.13 deleterious(0) probably_damaging(0.98) TCGA-EE-A3JH-06 7 99128995 99128995 C T ZKSCAN5 Missense_Mutation p.P548L 0.10 deleterious(0) probably_damaging(0.973) TCGA-EE-A3JH-06 8 139158223 139158223 G A FAM135B Silent p.F1173F 0.15 TCGA-EE-A3JH-06 8 23112815 23112815 C T CHMP7 Missense_Mutation p.P176L 0.11 deleterious(0.04) possibly_damaging(0.554) TCGA-EE-A3JH-06 8 24261570 24261570 G A ADAMDEC1 Missense_Mutation p.D459N 0.19 tolerated(0.31) benign(0.055) TCGA-EE-A3JH-06 8 28574447 28574447 G A EXTL3 Missense_Mutation p.V291I 0.06 tolerated(0.53) benign(0.009) TCGA-EE-A3JH-06 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.11 TCGA-EE-A3JH-06 8 88365890 88365890 G A CNBD1 Missense_Mutation p.M393I 0.27 deleterious(0.01) possibly_damaging(0.54) TCGA-EE-A3JH-06 9 113163201 113163201 A C SVEP1 Missense_Mutation p.V3252G 0.10 probably_damaging(1) TCGA-EE-A3JH-06 9 114090456 114090456 C G OR2K2 Silent p.L86L 0.12 TCGA-EE-A3JH-06 9 117138988 117138988 G C AKNA Missense_Mutation p.R367G 0.09 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JH-06 9 127316631 127316631 G A NR6A1 Missense_Mutation p.L121F 0.18 deleterious(0) probably_damaging(0.994) TCGA-EE-A3JH-06 9 140126553 140126553 G A SLC34A3 Missense_Mutation p.E39K 0.10 tolerated(0.15) benign(0.135) TCGA-EE-A3JH-06 9 19450564 19450564 G A ACER2 Nonsense_Mutation p.W253* 0.12 TCGA-EE-A3JH-06 9 19450565 19450565 G A ACER2 Nonsense_Mutation p.W253* 0.13 TCGA-EE-A3JH-06 9 27948907 27948907 C T LINGO2 Missense_Mutation p.G588D 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JH-06 9 74309493 74309493 A C TMEM2 Missense_Mutation p.Y1210D 0.20 deleterious(0) probably_damaging(0.98) TCGA-EE-A3JH-06 9 92002452 92002452 G A SEMA4D Silent p.F393F 0.12 TCGA-EE-A3JH-06 X 105450805 105450805 G A MUM1L1 Silent p.E460E 0.16 TCGA-EE-A3JH-06 X 107925060 107925060 C T COL4A5 Silent p.I1386I 0.29 TCGA-EE-A3JH-06 X 107925061 107925061 C T COL4A5 Missense_Mutation p.P1387S 0.31 possibly_damaging(0.905) TCGA-EE-A3JH-06 X 120009253 120009253 G A CT47B1 Missense_Mutation p.T91M 0.22 tolerated(0.06) benign(0.4) TCGA-EE-A3JH-06 X 131231325 131231325 C G FRMD7 Missense_Mutation p.D85H 0.28 deleterious(0) probably_damaging(1) TCGA-EE-A3JH-06 X 151093114 151093114 G A MAGEA4 3'UTR 0.32 TCGA-EE-A3JH-06 X 153036993 153036993 G A PLXNB3 Silent p.A823A 0.19 TCGA-EE-A3JH-06 X 322179 322179 G A PPP2R3B Silent p.H157H 0.09 TCGA-EE-A3JH-06 X 64138925 64138925 C T ZC4H2 Missense_Mutation p.M186I 0.27 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JH-06 X 69263405 69263405 G A AWAT2 Missense_Mutation p.P132L 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-EE-A3JI-06 10 104157369 104157369 C T NFKB2 Silent p.A196A 0.33 TCGA-EE-A3JI-06 10 104160128 104160128 G A NFKB2 Missense_Mutation p.G560R 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 10 104160129 104160129 G A NFKB2 Missense_Mutation p.G560E 0.31 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 10 104414852 104414852 C T TRIM8 Silent p.L228L 0.43 TCGA-EE-A3JI-06 10 105815148 105815148 C T COL17A1 Missense_Mutation p.G567R 0.32 unknown(0) TCGA-EE-A3JI-06 10 115964519 115964519 A G TDRD1 Silent p.E388E 0.62 TCGA-EE-A3JI-06 10 117027810 117027810 T C ATRNL1 Silent p.S663S 0.22 TCGA-EE-A3JI-06 10 122273434 122273434 C T PPAPDC1A Silent p.F59F 0.48 TCGA-EE-A3JI-06 10 123846798 123846798 C T TACC2 Missense_Mutation p.P1595S 0.60 possibly_damaging(0.859) TCGA-EE-A3JI-06 10 123970388 123970388 G A TACC2 Missense_Mutation p.V2150M 0.45 probably_damaging(0.993) TCGA-EE-A3JI-06 10 124214457 124214457 C T ARMS2 Missense_Mutation p.H72Y 0.29 tolerated_low_confidence(0.17) possibly_damaging(0.607) TCGA-EE-A3JI-06 10 124392772 124392772 G A DMBT1 Missense_Mutation p.G2026R 0.26 tolerated(0.18) probably_damaging(0.981) TCGA-EE-A3JI-06 10 125434442 125434442 C T GPR26 Silent p.I259I 0.59 TCGA-EE-A3JI-06 10 129902322 129902323 TG - MKI67 Frame_Shift_Del p.T2594Rfs*26 0.24 TCGA-EE-A3JI-06 10 134623952 134623952 G A TTC40 Missense_Mutation p.S2542F 0.41 deleterious_low_confidence(0.04) benign(0.26) TCGA-EE-A3JI-06 10 134659722 134659722 C T TTC40 Missense_Mutation p.A2093T 0.28 tolerated(0.23) benign(0.044) TCGA-EE-A3JI-06 10 134659723 134659723 C T TTC40 Silent p.S2092S 0.27 TCGA-EE-A3JI-06 10 135000021 135000021 C T KNDC1 Missense_Mutation p.P390L 0.48 tolerated(0.29) benign(0.012) TCGA-EE-A3JI-06 10 135123718 135123718 C T ZNF511 Silent p.D160D 0.52 TCGA-EE-A3JI-06 10 17271591 17271591 C G VIM Missense_Mutation p.P57R 0.13 deleterious(0.04) possibly_damaging(0.608) TCGA-EE-A3JI-06 10 18803458 18803458 C T CACNB2 Intron 0.30 TCGA-EE-A3JI-06 10 20568666 20568666 G A PLXDC2 Missense_Mutation p.R503K 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-EE-A3JI-06 10 23270363 23270363 C T ARMC3 Silent p.S337S 0.64 TCGA-EE-A3JI-06 10 24874293 24874293 G A ARHGAP21 Missense_Mutation p.P1642L 0.45 deleterious(0) possibly_damaging(0.837) TCGA-EE-A3JI-06 10 25887166 25887166 G A GPR158 Missense_Mutation p.E871K 0.54 deleterious(0.01) possibly_damaging(0.778) TCGA-EE-A3JI-06 10 28272830 28272830 G A ARMC4 Missense_Mutation p.P254L 0.49 deleterious(0.04) possibly_damaging(0.792) TCGA-EE-A3JI-06 10 28274109 28274109 G A ARMC4 Silent p.G138G 0.55 TCGA-EE-A3JI-06 10 436266 436266 T C DIP2C Missense_Mutation p.K478E 0.61 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 10 45648336 45648336 C T RP11-445N18.7 RNA 0.73 TCGA-EE-A3JI-06 10 45935913 45935913 C T ALOX5 Silent p.F339F 0.48 TCGA-EE-A3JI-06 10 48389691 48389691 G A RBP3 Missense_Mutation p.P396L 0.23 tolerated(0.22) benign(0.019) TCGA-EE-A3JI-06 10 49430446 49430446 G A FRMPD2 Silent p.I455I 0.54 TCGA-EE-A3JI-06 10 50950946 50950946 G A OGDHL Missense_Mutation p.A647V 0.49 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JI-06 10 51581361 51581361 G C NCOA4 Missense_Mutation p.G171R 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 10 55780074 55780074 A G PCDH15 Silent p.L877L 0.30 TCGA-EE-A3JI-06 10 61865687 61865687 C T ANK3 Missense_Mutation p.E1102K 0.57 possibly_damaging(0.702) TCGA-EE-A3JI-06 10 61932690 61932690 G A ANK3 Nonsense_Mutation p.Q784* 0.54 TCGA-EE-A3JI-06 10 63188832 63188832 G A TMEM26 Silent p.L153L 0.25 TCGA-EE-A3JI-06 10 70451223 70451224 GT - TET1 Frame_Shift_Del p.A2023Pfs*11 0.16 TCGA-EE-A3JI-06 10 71158464 71158464 C T HK1 Missense_Mutation p.A834V 0.33 deleterious(0) possibly_damaging(0.844) TCGA-EE-A3JI-06 10 72083724 72083724 G C LRRC20 Missense_Mutation p.L99V 0.32 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3JI-06 10 73059085 73059085 A C UNC5B 3'UTR 0.06 TCGA-EE-A3JI-06 10 73377129 73377129 C T CDH23 Silent p.I371I 0.29 TCGA-EE-A3JI-06 10 73567295 73567295 C T CDH23 Silent p.F537F 0.58 TCGA-EE-A3JI-06 10 73765672 73765672 C A CHST3 Nonsense_Mutation p.Y24* 0.31 TCGA-EE-A3JI-06 10 74684209 74684209 G A OIT3 Missense_Mutation p.E392K 0.29 tolerated(0.08) possibly_damaging(0.877) TCGA-EE-A3JI-06 10 74914157 74914157 G A ECD Missense_Mutation p.P214S 0.33 deleterious(0.02) possibly_damaging(0.764) TCGA-EE-A3JI-06 10 75548578 75548578 T C ZSWIM8 Missense_Mutation p.I120T 0.25 deleterious(0) probably_damaging(0.964) TCGA-EE-A3JI-06 10 75830736 75830736 C T VCL Missense_Mutation p.R132C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 10 7745330 7745330 C T ITIH2 5'UTR 0.41 TCGA-EE-A3JI-06 10 85971952 85971952 C T CDHR1 Missense_Mutation p.S524F 0.23 deleterious(0.01) possibly_damaging(0.797) TCGA-EE-A3JI-06 10 871159 871159 G A LARP4B Nonsense_Mutation p.R444* 0.79 TCGA-EE-A3JI-06 10 88705380 88705380 G A MMRN2 Silent p.F77F 0.31 TCGA-EE-A3JI-06 10 88768817 88768819 GAA - RP11-96C23.10 3'Flank 0.21 TCGA-EE-A3JI-06 10 90582746 90582746 C T ANKRD22 Silent p.R176R 0.48 TCGA-EE-A3JI-06 10 91222268 91222268 C T SLC16A12 Missense_Mutation p.G23E 0.42 tolerated_low_confidence(0.06) benign(0.001) TCGA-EE-A3JI-06 10 93773739 93773739 C T BTAF1 Missense_Mutation p.P1513S 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 10 93773740 93773740 C T BTAF1 Missense_Mutation p.P1513L 0.22 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 10 94612 94612 C T TUBB8 Missense_Mutation p.D74N 0.52 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-EE-A3JI-06 10 96101487 96101487 T A NOC3L Silent p.I529I 0.29 TCGA-EE-A3JI-06 10 96495102 96495102 G A CYP2C18 Silent p.L458L 0.49 TCGA-EE-A3JI-06 10 96826965 96826965 C T CYP2C8 Missense_Mutation p.A161T 0.47 deleterious(0.01) benign(0.037) TCGA-EE-A3JI-06 10 99358907 99358907 G A HOGA1 Missense_Mutation p.M134I 0.27 deleterious(0.04) benign(0.01) TCGA-EE-A3JI-06 11 102221293 102221294 - A BIRC2 Frame_Shift_Ins p.M237Nfs*24 0.16 TCGA-EE-A3JI-06 11 102668786 102668786 C T MMP1 Nonsense_Mutation p.W13* 0.39 TCGA-EE-A3JI-06 11 102824932 102824932 C G MMP13 Missense_Mutation p.G197A 0.16 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 1081518 1081518 C T MUC2 Silent p.L512L 0.48 TCGA-EE-A3JI-06 11 108277597 108277597 G A C11orf65 Missense_Mutation p.P108S 0.40 tolerated(0.14) benign(0.023) TCGA-EE-A3JI-06 11 108380889 108380889 G A EXPH5 Missense_Mutation p.S1782F 0.47 tolerated(0.07) benign(0.075) TCGA-EE-A3JI-06 11 111896274 111896274 G A DLAT Silent p.Q26Q 0.48 TCGA-EE-A3JI-06 11 112085529 112085529 G A BCO2 Silent p.K459K 0.50 TCGA-EE-A3JI-06 11 113215119 113215120 GA - TTC12 Frame_Shift_Del p.S372Rfs*10 0.15 TCGA-EE-A3JI-06 11 11400710 11400710 G A GALNT18 Missense_Mutation p.R233C 0.38 deleterious(0) possibly_damaging(0.803) TCGA-EE-A3JI-06 11 11400711 11400711 G A GALNT18 Silent p.I232I 0.38 TCGA-EE-A3JI-06 11 117392041 117392041 C T DSCAML1 Silent p.T399T 0.39 TCGA-EE-A3JI-06 11 118919538 118919539 TC - HYOU1 Frame_Shift_Del p.K685Efs*25 0.20 TCGA-EE-A3JI-06 11 119290157 119290157 G A THY1 Silent p.S149S 0.41 TCGA-EE-A3JI-06 11 121414344 121414344 G A SORL1 Silent p.G591G 0.44 TCGA-EE-A3JI-06 11 121430231 121430231 G A SORL1 Missense_Mutation p.E972K 0.52 tolerated(0.1) benign(0.201) TCGA-EE-A3JI-06 11 121458807 121458807 G A SORL1 Missense_Mutation p.G1298E 0.23 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 122968515 122968515 C T CLMP Silent p.G58G 0.43 TCGA-EE-A3JI-06 11 123777424 123777424 G A OR8D4 Missense_Mutation p.G96R 0.46 deleterious(0.01) benign(0.059) TCGA-EE-A3JI-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.40 deleterious(0) benign(0.398) TCGA-EE-A3JI-06 11 123886591 123886591 C T OR10G4 Missense_Mutation p.H104Y 0.32 deleterious(0.01) benign(0.033) TCGA-EE-A3JI-06 11 123900458 123900458 C G OR10G8 Missense_Mutation p.I43M 0.03 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 11 124134962 124134962 G A OR8G5 Missense_Mutation p.M80I 0.56 deleterious(0.03) benign(0.253) TCGA-EE-A3JI-06 11 12534911 12534911 G A PARVA Intron 0.26 TCGA-EE-A3JI-06 11 12534912 12534912 G A PARVA Intron 0.26 TCGA-EE-A3JI-06 11 12534916 12534916 G A PARVA Intron 0.26 TCGA-EE-A3JI-06 11 1254404 1254410 GCGGGCG - MUC5B Frame_Shift_Del p.A743Pfs*37 0.39 TCGA-EE-A3JI-06 11 125448076 125448076 C T EI24 Missense_Mutation p.L122F 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-EE-A3JI-06 11 126147010 126147010 C T FOXRED1 Silent p.F382F 0.46 TCGA-EE-A3JI-06 11 1266729 1266729 C T MUC5B Silent p.P2873P 0.42 TCGA-EE-A3JI-06 11 130079376 130079376 T C ST14 Missense_Mutation p.V770A 0.16 deleterious(0) possibly_damaging(0.802) TCGA-EE-A3JI-06 11 130106988 130106988 C T ZBTB44 Missense_Mutation p.G423E 0.41 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 130784896 130784896 G A SNX19 Silent p.F313F 0.37 TCGA-EE-A3JI-06 11 133790485 133790485 G A IGSF9B Silent p.F1045F 0.45 TCGA-EE-A3JI-06 11 17424266 17424266 G A ABCC8 Missense_Mutation p.P1198S 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 18740248 18740248 C T IGSF22 Missense_Mutation p.D242N 0.45 tolerated(0.35) probably_damaging(1) TCGA-EE-A3JI-06 11 20622860 20622860 G A SLC6A5 Silent p.Q63Q 0.53 TCGA-EE-A3JI-06 11 20676348 20676348 C T SLC6A5 Silent p.P776P 0.46 TCGA-EE-A3JI-06 11 22247572 22247572 C G ANO5 Missense_Mutation p.L113V 0.25 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JI-06 11 26725413 26725413 C T SLC5A12 Missense_Mutation p.G203R 0.46 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 27528409 27528409 C T LIN7C 5'Flank 0.50 TCGA-EE-A3JI-06 11 284360 284360 G A NLRP6 Missense_Mutation p.E778K 0.41 tolerated(0.07) benign(0.094) TCGA-EE-A3JI-06 11 32739683 32739683 A G CCDC73 Missense_Mutation p.I49T 0.47 tolerated(1) benign(0.002) TCGA-EE-A3JI-06 11 34181823 34181823 C T ABTB2 Silent p.E825E 0.40 TCGA-EE-A3JI-06 11 3430129 3430129 C T TSSC2 RNA 0.46 TCGA-EE-A3JI-06 11 34501711 34501711 C T ELF5 3'UTR 0.42 TCGA-EE-A3JI-06 11 35456311 35456311 C T PAMR1 Missense_Mutation p.G476R 0.44 tolerated(0.46) benign(0.012) TCGA-EE-A3JI-06 11 35641515 35641516 AG - FJX1 3'UTR 0.22 TCGA-EE-A3JI-06 11 35747489 35747489 G A TRIM44 Missense_Mutation p.M255I 0.39 tolerated(0.13) unknown(0) TCGA-EE-A3JI-06 11 36302279 36302279 G A COMMD9 Nonsense_Mutation p.Q54* 0.41 TCGA-EE-A3JI-06 11 3661546 3661546 G T ART5 Missense_Mutation p.T38N 0.39 tolerated(0.22) benign(0.065) TCGA-EE-A3JI-06 11 373820 373820 G A B4GALNT4 Missense_Mutation p.E259K 0.20 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 40137722 40137722 G A LRRC4C Silent p.L41L 0.52 TCGA-EE-A3JI-06 11 420825 420825 G A ANO9 Missense_Mutation p.S509F 0.33 tolerated(0.05) benign(0.026) TCGA-EE-A3JI-06 11 420826 420826 A T ANO9 Missense_Mutation p.S509T 0.32 tolerated(0.61) benign(0.04) TCGA-EE-A3JI-06 11 45949594 45949594 G T GYLTL1B Silent p.L576L 0.36 TCGA-EE-A3JI-06 11 47307065 47307066 CT - MADD Frame_Shift_Del p.R827Gfs*70 0.36 TCGA-EE-A3JI-06 11 47444150 47444150 C G PSMC3 Missense_Mutation p.E287Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 11 47602408 47602408 G A NDUFS3 Missense_Mutation p.E85K 0.36 deleterious(0.02) possibly_damaging(0.786) TCGA-EE-A3JI-06 11 48285489 48285489 C T OR4X1 Missense_Mutation p.S26F 0.46 tolerated(1) benign(0.002) TCGA-EE-A3JI-06 11 48347291 48347291 G A OR4C3 Missense_Mutation p.A267T 0.35 deleterious(0.01) benign(0.094) TCGA-EE-A3JI-06 11 4870395 4870395 G A OR51S1 Missense_Mutation p.S15L 0.40 tolerated(0.59) benign(0.002) TCGA-EE-A3JI-06 11 5172831 5172831 G A OR52A1 Missense_Mutation p.L257F 0.38 tolerated(0.16) possibly_damaging(0.529) TCGA-EE-A3JI-06 11 5172832 5172832 G A OR52A1 Silent p.L256L 0.38 TCGA-EE-A3JI-06 11 5345282 5345282 G A OR51B2 Silent p.I82I 0.49 TCGA-EE-A3JI-06 11 5364755 5364755 C T OR51B5 5'UTR 0.20 TCGA-EE-A3JI-06 11 55110739 55110739 G A OR4A16 Silent p.V21V 0.40 TCGA-EE-A3JI-06 11 55418502 55418502 C T OR4S2 Silent p.L41L 0.43 TCGA-EE-A3JI-06 11 55541105 55541105 C T OR5D13 Silent p.F64F 0.42 TCGA-EE-A3JI-06 11 55703593 55703593 G A OR5I1 Missense_Mutation p.S95F 0.32 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 11 55735466 55735466 G A OR10AG1 Silent p.P158P 0.16 TCGA-EE-A3JI-06 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.43 TCGA-EE-A3JI-06 11 56058260 56058260 G A OR8H1 Silent p.F93F 0.48 TCGA-EE-A3JI-06 11 57003998 57003998 C T APLNR Missense_Mutation p.A161T 0.30 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 11 57003999 57003999 C T APLNR Silent p.L160L 0.29 TCGA-EE-A3JI-06 11 57466668 57466668 C T ZDHHC5 Missense_Mutation p.S587L 0.43 tolerated(0.26) benign(0.003) TCGA-EE-A3JI-06 11 5757934 5757934 C T OR56B1 Missense_Mutation p.S63F 0.38 deleterious(0) benign(0.19) TCGA-EE-A3JI-06 11 5809918 5809918 C T OR52N1 Silent p.G43G 0.38 TCGA-EE-A3JI-06 11 60637284 60637284 C T ZP1 Missense_Mutation p.S198F 0.42 tolerated(0.36) benign(0.007) TCGA-EE-A3JI-06 11 60698117 60698118 AG - TMEM132A Frame_Shift_Del p.E335Afs*8 0.18 TCGA-EE-A3JI-06 11 60776166 60776166 C T CD6 Silent p.A210A 0.37 TCGA-EE-A3JI-06 11 61076533 61076534 CA - DDB1 Frame_Shift_Del p.V861Gfs*2 0.13 TCGA-EE-A3JI-06 11 61096997 61096997 C T DDB1 Silent p.R129R 0.41 TCGA-EE-A3JI-06 11 61110896 61110896 C T DAK Silent p.L316L 0.44 TCGA-EE-A3JI-06 11 62295535 62295535 G A AHNAK Silent p.S2118S 0.42 TCGA-EE-A3JI-06 11 62339039 62339039 G A EEF1G Silent p.T117T 0.26 TCGA-EE-A3JI-06 11 62380861 62380861 C A ROM1 Silent p.L36L 0.49 TCGA-EE-A3JI-06 11 62416967 62416967 C A INTS5 Missense_Mutation p.Q195H 0.47 tolerated(0.16) benign(0.111) TCGA-EE-A3JI-06 11 62997029 62997029 G A SLC22A25 Silent p.Y32Y 0.41 TCGA-EE-A3JI-06 11 63057884 63057884 C T SLC22A10 Silent p.L83L 0.41 TCGA-EE-A3JI-06 11 64112567 64112567 G A CCDC88B Missense_Mutation p.E852K 0.36 deleterious(0.02) benign(0.011) TCGA-EE-A3JI-06 11 64124590 64124590 G A CCDC88B 3'UTR 0.51 TCGA-EE-A3JI-06 11 64900542 64900542 G A SYVN1 Missense_Mutation p.L77F 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 11 64900543 64900543 G A SYVN1 Silent p.H76H 0.38 TCGA-EE-A3JI-06 11 65266138 65266138 A T MALAT1 RNA 0.32 TCGA-EE-A3JI-06 11 65268401 65268401 T C MALAT1 RNA 0.16 TCGA-EE-A3JI-06 11 65338072 65338072 C T SSSCA1 Intron 0.43 TCGA-EE-A3JI-06 11 65366005 65366005 A T MAP3K11 Silent p.P767P 0.44 TCGA-EE-A3JI-06 11 65822714 65822716 AGA - SF3B2 In_Frame_Del p.E145del 0.16 TCGA-EE-A3JI-06 11 66258746 66258746 G T DPP3 Silent p.V230V 0.48 TCGA-EE-A3JI-06 11 66999061 66999061 C T KDM2A Missense_Mutation p.S370F 0.40 deleterious(0.04) benign(0.07) TCGA-EE-A3JI-06 11 67208889 67208889 C A CORO1B Missense_Mutation p.W184L 0.42 tolerated(0.06) probably_damaging(0.998) TCGA-EE-A3JI-06 11 67274939 67274939 G A CDK2AP2 Silent p.S70S 0.44 TCGA-EE-A3JI-06 11 67829480 67829480 G A CHKA Silent p.F418F 0.43 TCGA-EE-A3JI-06 11 679783 679783 G A DEAF1 Missense_Mutation p.S344L 0.46 deleterious(0) possibly_damaging(0.719) TCGA-EE-A3JI-06 11 6806653 6806653 C T OR2AG1 Missense_Mutation p.P129S 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 6806654 6806654 C T OR2AG1 Missense_Mutation p.P129L 0.29 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 11 70171677 70171678 AG - PPFIA1 Frame_Shift_Del p.E202Afs*5 0.12 TCGA-EE-A3JI-06 11 70178196 70178196 C T PPFIA1 Missense_Mutation p.S403F 0.45 deleterious(0) possibly_damaging(0.642) TCGA-EE-A3JI-06 11 70222682 70222682 G A PPFIA1 Missense_Mutation p.M1120I 0.35 tolerated(0.05) benign(0.001) TCGA-EE-A3JI-06 11 70222683 70222683 G A PPFIA1 Missense_Mutation p.G1121R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 11 71715819 71715819 G C NUMA1 Missense_Mutation p.T1958S 0.44 probably_damaging(0.998) TCGA-EE-A3JI-06 11 71939239 71939240 AG - INPPL1 Frame_Shift_Del p.K64Afs*10 0.14 TCGA-EE-A3JI-06 11 74800209 74800210 AG - OR2AT4 Frame_Shift_Del p.F183Lfs*2 0.12 TCGA-EE-A3JI-06 11 7688983 7688983 C T CYB5R2 Silent p.R178R 0.45 TCGA-EE-A3JI-06 11 77330736 77330736 C T CLNS1A Silent p.G217G 0.47 TCGA-EE-A3JI-06 11 7982294 7982294 G A NLRP10 Missense_Mutation p.L289F 0.42 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A3JI-06 11 83195190 83195190 C T DLG2 Missense_Mutation p.E759K 0.42 deleterious(0.02) probably_damaging(0.953) TCGA-EE-A3JI-06 11 8494734 8494734 C T STK33 Silent p.R105R 0.37 TCGA-EE-A3JI-06 11 8704276 8704276 G A RPL27A 5'UTR 0.42 TCGA-EE-A3JI-06 11 8948716 8948716 C T C11orf16 Silent p.E110E 0.47 TCGA-EE-A3JI-06 11 89891355 89891355 C T NAALAD2 Missense_Mutation p.P280L 0.39 deleterious(0.01) benign(0.297) TCGA-EE-A3JI-06 11 92085622 92085622 C T FAT3 Missense_Mutation p.A115V 0.42 probably_damaging(0.999) TCGA-EE-A3JI-06 11 95552020 95552020 C T CEP57 Silent p.L217L 0.38 TCGA-EE-A3JI-06 12 101880137 101880137 G A SPIC Missense_Mutation p.R112Q 0.81 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 12 104461797 104461797 G T HCFC2 Nonsense_Mutation p.G129* 0.23 TCGA-EE-A3JI-06 12 104682758 104682758 C G TXNRD1 Silent p.T118T 0.32 TCGA-EE-A3JI-06 12 109042520 109042520 G A CORO1C Missense_Mutation p.S389F 0.87 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JI-06 12 11339441 11339441 C T TAS2R42 Missense_Mutation p.G35R 0.37 deleterious(0.01) possibly_damaging(0.53) TCGA-EE-A3JI-06 12 120580490 120580490 G A GCN1L1 Missense_Mutation p.R1884W 0.52 probably_damaging(0.999) TCGA-EE-A3JI-06 12 120602263 120602263 G A GCN1L1 Silent p.S575S 0.62 TCGA-EE-A3JI-06 12 121471315 121471315 C T OASL Missense_Mutation p.G144R 0.23 tolerated(0.36) benign(0.001) TCGA-EE-A3JI-06 12 121471316 121471316 C T OASL Silent p.R143R 0.22 TCGA-EE-A3JI-06 12 122439497 122439497 C T WDR66 Silent p.S1110S 0.56 TCGA-EE-A3JI-06 12 123055670 123055670 C T KNTC1 Silent p.S672S 0.17 TCGA-EE-A3JI-06 12 12317381 12317381 G A LRP6 Silent p.T626T 0.47 TCGA-EE-A3JI-06 12 125460023 125460023 G A DHX37 Nonsense_Mutation p.R308* 0.32 TCGA-EE-A3JI-06 12 125834809 125834809 G A TMEM132B Silent p.L288L 0.61 TCGA-EE-A3JI-06 12 126138423 126138423 G A TMEM132B Missense_Mutation p.D802N 0.58 tolerated(0.12) benign(0.081) TCGA-EE-A3JI-06 12 130921760 130921760 C T RIMBP2 Missense_Mutation p.G561D 0.80 deleterious(0.02) benign(0.127) TCGA-EE-A3JI-06 12 130927093 130927093 G A RIMBP2 Silent p.F251F 0.29 TCGA-EE-A3JI-06 12 131291609 131291610 CA - STX2 Frame_Shift_Del p.V127Gfs*8 0.18 TCGA-EE-A3JI-06 12 14839148 14839148 C T GUCY2C Silent p.R114R 0.45 TCGA-EE-A3JI-06 12 16111229 16111229 C T DERA Silent p.I79I 0.61 TCGA-EE-A3JI-06 12 18644410 18644410 G A PIK3C2G Missense_Mutation p.R863K 0.38 tolerated(0.08) benign(0.008) TCGA-EE-A3JI-06 12 1995503 1995503 C T CACNA2D4 Silent p.V293V 0.46 TCGA-EE-A3JI-06 12 21168679 21168679 C T SLCO1B7 Missense_Mutation p.S17F 0.62 deleterious(0) probably_damaging(0.975) TCGA-EE-A3JI-06 12 21172247 21172247 G A SLCO1B7 Missense_Mutation p.G51R 0.35 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 12 21453400 21453400 G A SLCO1A2 Silent p.F264F 0.34 TCGA-EE-A3JI-06 12 21715933 21715933 G A GYS2 Silent p.F327F 0.39 TCGA-EE-A3JI-06 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.40 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 12 27143381 27143381 A C TM7SF3 Splice_Site p.X290_splice 0.21 TCGA-EE-A3JI-06 12 33031129 33031129 T A PKP2 Missense_Mutation p.T229S 0.26 tolerated(0.68) benign(0.008) TCGA-EE-A3JI-06 12 335560 335560 C T SLC6A13 Silent p.E352E 0.13 TCGA-EE-A3JI-06 12 40114658 40114658 G A C12orf40 Missense_Mutation p.E522K 0.82 deleterious(0.02) benign(0.187) TCGA-EE-A3JI-06 12 49447822 49447822 G A KMT2D Silent p.F204F 0.89 TCGA-EE-A3JI-06 12 49745357 49745357 C T DNAJC22 3'UTR 0.82 TCGA-EE-A3JI-06 12 50232834 50232834 C T BCDIN3D Intron 0.79 TCGA-EE-A3JI-06 12 5154579 5154579 C T KCNA5 Silent p.I422I 0.33 TCGA-EE-A3JI-06 12 55846284 55846284 C T OR6C2 Missense_Mutation p.A96V 0.80 tolerated_low_confidence(1) benign(0.012) TCGA-EE-A3JI-06 12 56221295 56221296 TC - DNAJC14 Frame_Shift_Del p.D383* 0.32 TCGA-EE-A3JI-06 12 56552403 56552403 G C MYL6 Intron 0.76 TCGA-EE-A3JI-06 12 57111221 57111221 A T NACA Intron 0.93 TCGA-EE-A3JI-06 12 57111289 57111289 G A NACA Intron 0.85 TCGA-EE-A3JI-06 12 57589163 57589163 G A LRP1 Silent p.E2806E 0.84 TCGA-EE-A3JI-06 12 58018666 58018666 G C SLC26A10 Silent p.G415G 0.85 TCGA-EE-A3JI-06 12 59308075 59308075 G A LRIG3 Silent p.S93S 0.77 TCGA-EE-A3JI-06 12 59308076 59308076 G A LRIG3 Missense_Mutation p.S93F 0.77 tolerated(0.28) benign(0.004) TCGA-EE-A3JI-06 12 6424307 6424307 C T PLEKHG6 Missense_Mutation p.S144F 0.44 deleterious(0) possibly_damaging(0.823) TCGA-EE-A3JI-06 12 66308746 66308746 T C HMGA2 Intron 0.10 TCGA-EE-A3JI-06 12 66725339 66725339 G T HELB Missense_Mutation p.D1026Y 0.50 tolerated(0.45) benign(0.035) TCGA-EE-A3JI-06 12 67699601 67699601 C T CAND1 Missense_Mutation p.T718I 0.11 deleterious(0.03) benign(0.215) TCGA-EE-A3JI-06 12 7055883 7055884 AG - PTPN6 5'Flank 0.18 TCGA-EE-A3JI-06 12 70760624 70760624 T A KCNMB4 Missense_Mutation p.F37Y 0.09 deleterious(0.01) benign(0.369) TCGA-EE-A3JI-06 12 71029589 71029589 C T PTPRB Missense_Mutation p.E105K 0.05 tolerated_low_confidence(0.22) benign(0.004) TCGA-EE-A3JI-06 12 71533542 71533542 G A TSPAN8 Silent p.G70G 0.87 TCGA-EE-A3JI-06 12 72030778 72030778 G A ZFC3H1 Missense_Mutation p.P596L 0.08 tolerated(0.08) probably_damaging(0.981) TCGA-EE-A3JI-06 12 7295772 7295772 C T CLSTN3 Missense_Mutation p.P571L 0.41 deleterious(0) benign(0.266) TCGA-EE-A3JI-06 12 7295773 7295773 C T CLSTN3 Silent p.P571P 0.41 TCGA-EE-A3JI-06 12 7528012 7528012 C T CD163L1 Missense_Mutation p.G956R 0.46 tolerated(0.07) possibly_damaging(0.777) TCGA-EE-A3JI-06 12 78415601 78415601 C T NAV3 Missense_Mutation p.S661L 0.77 tolerated(0.41) benign(0.005) TCGA-EE-A3JI-06 12 7894035 7894035 C T CLEC4C Missense_Mutation p.E73K 0.44 tolerated(0.15) benign(0.015) TCGA-EE-A3JI-06 12 8374314 8374314 G A FAM90A1 3'UTR 0.48 TCGA-EE-A3JI-06 12 88926250 88926250 T G KITLG Missense_Mutation p.T54P 0.26 tolerated(0.08) benign(0.004) TCGA-EE-A3JI-06 12 9075271 9075271 C T PHC1 Missense_Mutation p.R167W 0.22 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-EE-A3JI-06 12 9220803 9220803 C T A2M Missense_Mutation p.E1462K 0.45 tolerated(0.06) benign(0.176) TCGA-EE-A3JI-06 12 97098520 97098520 G A C12orf55 Splice_Site p.X2159_splice 0.84 TCGA-EE-A3JI-06 13 101742024 101742024 T A NALCN Missense_Mutation p.N1160I 0.26 tolerated(0.06) benign(0.288) TCGA-EE-A3JI-06 13 103309516 103309516 T A TPP2 Missense_Mutation p.F1021L 0.37 deleterious(0.02) benign(0.156) TCGA-EE-A3JI-06 13 109777484 109777484 A T MYO16 Missense_Mutation p.Q1165L 0.11 deleterious(0.01) possibly_damaging(0.77) TCGA-EE-A3JI-06 13 110864826 110864826 C T COL4A1 Missense_Mutation p.G109R 0.23 unknown(0) TCGA-EE-A3JI-06 13 111137338 111137338 G A COL4A2 Missense_Mutation p.G997R 0.10 possibly_damaging(0.72) TCGA-EE-A3JI-06 13 111955450 111955450 C T ARHGEF7 Missense_Mutation p.T644I 0.40 deleterious(0) probably_damaging(0.944) TCGA-EE-A3JI-06 13 114322124 114322124 C A GRK1 Silent p.I141I 0.45 TCGA-EE-A3JI-06 13 115090600 115090600 C T CHAMP1 Missense_Mutation p.P428L 0.48 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 13 115091157 115091157 C T CHAMP1 Missense_Mutation p.P614S 0.44 tolerated(0.75) benign(0.014) TCGA-EE-A3JI-06 13 20797110 20797110 C T GJB6 Silent p.G170G 0.35 TCGA-EE-A3JI-06 13 25442804 25442804 C T RNF17 Missense_Mutation p.P1410S 0.38 deleterious(0) possibly_damaging(0.902) TCGA-EE-A3JI-06 13 28893659 28893659 G A FLT1 Silent p.L1063L 0.43 TCGA-EE-A3JI-06 13 31233516 31233516 C T USPL1 3'UTR 0.55 TCGA-EE-A3JI-06 13 31843357 31843357 C T B3GALTL Silent p.T201T 0.50 TCGA-EE-A3JI-06 13 32367099 32367099 G C RXFP2 Missense_Mutation p.V554L 0.34 tolerated(0.33) benign(0.01) TCGA-EE-A3JI-06 13 32913867 32913867 C T BRCA2 Missense_Mutation p.S1792F 0.41 tolerated(0.06) benign(0.132) TCGA-EE-A3JI-06 13 33635227 33635227 C T KL Nonsense_Mutation p.R671* 0.43 TCGA-EE-A3JI-06 13 38320463 38320463 G A TRPC4 Nonsense_Mutation p.R170* 0.45 TCGA-EE-A3JI-06 13 38357319 38357319 G A TRPC4 Missense_Mutation p.S51F 0.39 tolerated(0.73) benign(0.006) TCGA-EE-A3JI-06 13 39550839 39550839 A T STOML3 Missense_Mutation p.C50S 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-EE-A3JI-06 13 42044656 42044656 G A RGCC 3'UTR 0.43 TCGA-EE-A3JI-06 13 45563610 45563610 G A NUFIP1 5'UTR 0.09 TCGA-EE-A3JI-06 13 45914166 45914166 C T TPT1 Missense_Mutation p.E86K 0.35 tolerated(0.52) benign(0.065) TCGA-EE-A3JI-06 13 46287704 46287704 C T SPERT Silent p.L182L 0.46 TCGA-EE-A3JI-06 13 46653009 46653009 C T CPB2 Missense_Mutation p.E138K 0.37 tolerated(0.53) benign(0.027) TCGA-EE-A3JI-06 13 47409284 47409284 G A HTR2A Silent p.I368I 0.49 TCGA-EE-A3JI-06 13 50235286 50235286 G A EBPL Missense_Mutation p.L147F 0.38 tolerated(0.18) benign(0.004) TCGA-EE-A3JI-06 13 53048124 53048125 AA - CKAP2 Frame_Shift_Del p.K571Rfs*5 0.20 TCGA-EE-A3JI-06 13 53217100 53217100 C T HNRNPA1L2 Missense_Mutation p.S158F 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-EE-A3JI-06 13 84455278 84455278 C T SLITRK1 Missense_Mutation p.R122Q 0.46 deleterious(0.01) possibly_damaging(0.834) TCGA-EE-A3JI-06 14 101450243 101450243 A G SNORD114-23 RNA 0.40 TCGA-EE-A3JI-06 14 101512841 101512841 G A MIR487B RNA 0.86 TCGA-EE-A3JI-06 14 105414446 105414446 T C AHNAK2 Missense_Mutation p.S2448G 0.05 benign(0.294) TCGA-EE-A3JI-06 14 105477801 105477802 CT - CDCA4 Frame_Shift_Del p.G156Kfs*7 0.23 TCGA-EE-A3JI-06 14 19988220 19988220 C T POTEM 3'UTR 0.19 TCGA-EE-A3JI-06 14 20403926 20403926 T A OR4K1 Missense_Mutation p.V34D 0.58 deleterious(0) benign(0.258) TCGA-EE-A3JI-06 14 20848605 20848605 G A TEP1 Missense_Mutation p.L1598F 0.62 tolerated(0.13) benign(0.024) TCGA-EE-A3JI-06 14 21542540 21542540 T G ARHGEF40 Silent p.L217L 0.29 TCGA-EE-A3JI-06 14 21542541 21542541 C T ARHGEF40 Missense_Mutation p.P218S 0.30 tolerated(0.18) benign(0.005) TCGA-EE-A3JI-06 14 21550456 21550456 C T ARHGEF40 Missense_Mutation p.A1102V 0.45 tolerated(0.08) benign(0.219) TCGA-EE-A3JI-06 14 21785991 21785991 G A RPGRIP1 Missense_Mutation p.E430K 0.30 deleterious(0.05) benign(0.028) TCGA-EE-A3JI-06 14 22509204 22509204 G A TRAV20 Missense_Mutation p.V48I 0.33 tolerated(0.25) benign(0.046) TCGA-EE-A3JI-06 14 22564757 22564757 C T TRDV1 Missense_Mutation p.R70C 0.60 deleterious(0.04) benign(0.286) TCGA-EE-A3JI-06 14 22924275 22924275 G A TRDJ4 Silent p.L12L 0.32 TCGA-EE-A3JI-06 14 24652236 24652236 G A IPO4 Silent p.P789P 0.30 TCGA-EE-A3JI-06 14 24731320 24731320 G A TGM1 Missense_Mutation p.P80L 0.38 deleterious(0.02) benign(0.022) TCGA-EE-A3JI-06 14 24731321 24731321 G A TGM1 Missense_Mutation p.P80S 0.38 deleterious(0.04) benign(0.001) TCGA-EE-A3JI-06 14 24910203 24910203 C T KHNYN 3'UTR 0.62 TCGA-EE-A3JI-06 14 24974803 24974803 C T CMA1 Silent p.R221R 0.51 TCGA-EE-A3JI-06 14 25043008 25043008 G A CTSG Silent p.S201S 0.25 TCGA-EE-A3JI-06 14 28734196 28734196 G A BNIP3P1 RNA 0.26 TCGA-EE-A3JI-06 14 36840587 36840587 C T DPPA3P2 RNA 0.14 TCGA-EE-A3JI-06 14 36840665 36840665 A C DPPA3P2 RNA 0.15 TCGA-EE-A3JI-06 14 36987004 36987004 G A NKX2-1 Missense_Mutation p.H229Y 0.66 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JI-06 14 61439140 61439140 G A TRMT5 3'UTR 0.47 TCGA-EE-A3JI-06 14 61497233 61497233 C T SLC38A6 Silent p.D158D 0.19 TCGA-EE-A3JI-06 14 62567416 62567416 G A SYT16 Silent p.L643L 0.32 TCGA-EE-A3JI-06 14 63784528 63784528 G T GPHB5 RNA 0.67 TCGA-EE-A3JI-06 14 65253509 65253509 C T SPTB Silent p.G1058G 0.55 TCGA-EE-A3JI-06 14 67853991 67853992 CT - PLEK2 3'UTR 0.25 TCGA-EE-A3JI-06 14 69341494 69341494 C T ACTN1 3'UTR 0.67 TCGA-EE-A3JI-06 14 70238062 70238062 G A SRSF5 Missense_Mutation p.V235M 0.30 tolerated_low_confidence(0.14) unknown(0) TCGA-EE-A3JI-06 14 70634218 70634218 C T SLC8A3 Missense_Mutation p.E308K 0.50 tolerated(0.06) possibly_damaging(0.83) TCGA-EE-A3JI-06 14 70713681 70713681 C T ADAM21P1 RNA 0.48 TCGA-EE-A3JI-06 14 70925439 70925439 G A ADAM21 Missense_Mutation p.R408H 0.20 tolerated(0.18) benign(0.001) TCGA-EE-A3JI-06 14 73406971 73406971 C T DCAF4 Silent p.F79F 0.59 TCGA-EE-A3JI-06 14 74086379 74086379 C T ACOT6 Missense_Mutation p.P154S 0.57 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JI-06 14 74345864 74345864 C T PTGR2 Silent p.L195L 0.62 TCGA-EE-A3JI-06 14 74411278 74411278 G A FAM161B Missense_Mutation p.L292F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JI-06 14 75022272 75022272 G C LTBP2 Missense_Mutation p.P319A 0.06 tolerated(0.19) benign(0.002) TCGA-EE-A3JI-06 14 75585546 75585546 G A NEK9 Missense_Mutation p.S206F 0.84 deleterious(0.01) probably_damaging(0.972) TCGA-EE-A3JI-06 14 92413555 92413555 A T FBLN5 Splice_Site p.X6_splice 0.85 TCGA-EE-A3JI-06 14 93962767 93962767 T C UNC79 Silent p.C64C 0.42 TCGA-EE-A3JI-06 14 94395279 94395279 C T FAM181A Silent p.F278F 0.88 TCGA-EE-A3JI-06 14 94527378 94527378 G A DDX24 Silent p.S426S 0.82 TCGA-EE-A3JI-06 14 94527379 94527379 G A DDX24 Missense_Mutation p.S426F 0.82 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JI-06 14 96752090 96752090 C A ATG2B 3'UTR 0.78 TCGA-EE-A3JI-06 15 23689122 23689122 C T GOLGA6L2 Silent p.G131G 0.62 TCGA-EE-A3JI-06 15 25488688 25488688 C T SNORD115-40 5'Flank 0.42 TCGA-EE-A3JI-06 15 28196959 28196959 G A OCA2 Missense_Mutation p.S641L 0.39 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 15 28519529 28519529 G A HERC2 Silent p.P236P 0.42 TCGA-EE-A3JI-06 15 31294703 31294703 G A TRPM1 Silent p.S1417S 0.40 TCGA-EE-A3JI-06 15 34129111 34129111 C T RYR3 Missense_Mutation p.S3858F 0.25 probably_damaging(0.928) TCGA-EE-A3JI-06 15 38811551 38811551 C T RASGRP1 Silent p.K116K 0.38 TCGA-EE-A3JI-06 15 40589724 40589724 G A PLCB2 Missense_Mutation p.P441S 0.50 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JI-06 15 41555046 41555046 C T CHP1 Missense_Mutation p.P105L 0.37 deleterious(0.03) benign(0.001) TCGA-EE-A3JI-06 15 41555047 41555047 C T CHP1 Silent p.P105P 0.37 TCGA-EE-A3JI-06 15 41820202 41820202 G A RPAP1 Silent p.D428D 0.33 TCGA-EE-A3JI-06 15 42823803 42823803 C T SNAP23 3'UTR 0.56 TCGA-EE-A3JI-06 15 43584211 43584211 C T TGM7 Missense_Mutation p.R175K 0.21 tolerated(1) benign(0.003) TCGA-EE-A3JI-06 15 43769853 43769853 T A TP53BP1 Missense_Mutation p.K298M 0.14 deleterious(0.03) benign(0.192) TCGA-EE-A3JI-06 15 45357500 45357500 G A SORD Missense_Mutation p.A153T 0.20 deleterious(0) probably_damaging(0.989) TCGA-EE-A3JI-06 15 48414273 48414274 GT - SLC24A5 Intron 0.18 TCGA-EE-A3JI-06 15 48713792 48713792 C T FBN1 Silent p.R2554R 0.40 TCGA-EE-A3JI-06 15 48808426 48808426 G A FBN1 Silent p.V427V 0.48 TCGA-EE-A3JI-06 15 49064872 49064872 C T CEP152 Missense_Mutation p.D532N 0.15 tolerated(0.06) possibly_damaging(0.561) TCGA-EE-A3JI-06 15 49531560 49531560 C T GALK2 Missense_Mutation p.S167F 0.49 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JI-06 15 51250729 51250729 C T AP4E1 Missense_Mutation p.P530L 0.48 tolerated(0.21) benign(0.276) TCGA-EE-A3JI-06 15 52188700 52188700 C T TMOD3 Missense_Mutation p.R238W 0.39 deleterious(0) probably_damaging(0.992) TCGA-EE-A3JI-06 15 54841879 54841879 C T UNC13C Missense_Mutation p.S1956F 0.41 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-EE-A3JI-06 15 56032809 56032809 G A PRTG Silent p.V56V 0.43 TCGA-EE-A3JI-06 15 59406711 59406711 C T CCNB2 Silent p.A112A 0.36 TCGA-EE-A3JI-06 15 59564525 59564525 A C MYO1E Missense_Mutation p.Y43D 0.26 deleterious(0) probably_damaging(0.966) TCGA-EE-A3JI-06 15 62949984 62949984 C T TLN2 Silent p.I225I 0.39 TCGA-EE-A3JI-06 15 64972383 64972383 G A ZNF609 Splice_Site p.X1257_splice 0.52 TCGA-EE-A3JI-06 15 65489678 65489678 C T CILP Silent p.G982G 0.42 TCGA-EE-A3JI-06 15 65686869 65686869 G A IGDCC4 Nonsense_Mutation p.Q532* 0.43 TCGA-EE-A3JI-06 15 65804671 65804671 T C DPP8 Missense_Mutation p.D90G 0.20 tolerated(0.57) benign(0.001) TCGA-EE-A3JI-06 15 66782952 66782952 A C MAP2K1 Nonstop_Mutation p.*394Sext*36 0.04 TCGA-EE-A3JI-06 15 71952944 71952944 G A THSD4 Missense_Mutation p.G410S 0.49 tolerated(0.62) benign(0.04) TCGA-EE-A3JI-06 15 73541499 73541499 A T NEO1 Missense_Mutation p.I569F 0.36 deleterious(0) probably_damaging(0.944) TCGA-EE-A3JI-06 15 74632090 74632090 G A CYP11A1 Missense_Mutation p.S332F 0.37 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 15 74963887 74963887 G A EDC3 Silent p.S131S 0.44 TCGA-EE-A3JI-06 15 74963888 74963888 G A EDC3 Missense_Mutation p.S131F 0.43 deleterious(0.01) benign(0.316) TCGA-EE-A3JI-06 15 75320597 75320597 C T PPCDC 5'UTR 0.61 TCGA-EE-A3JI-06 15 75341001 75341001 C T PPCDC Silent p.L156L 0.46 TCGA-EE-A3JI-06 15 75980951 75980951 G A CSPG4 Missense_Mutation p.P819S 0.39 tolerated(0.73) benign(0) TCGA-EE-A3JI-06 15 77425666 77425666 G A PEAK1 Missense_Mutation p.S1253F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 15 78882618 78882618 C T CHRNA5 Silent p.F295F 0.46 TCGA-EE-A3JI-06 15 78885442 78885442 A T CHRNA5 Missense_Mutation p.E418D 0.43 tolerated(0.4) benign(0.029) TCGA-EE-A3JI-06 15 88423659 88423659 C A NTRK3 Missense_Mutation p.V726L 0.38 deleterious(0) probably_damaging(0.968) TCGA-EE-A3JI-06 15 89401192 89401192 C T ACAN Silent p.V1792V 0.42 TCGA-EE-A3JI-06 15 89416215 89416215 C T ACAN Missense_Mutation p.P2431L 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 15 90170219 90170219 G T TICRR Nonsense_Mutation p.E1879* 0.47 TCGA-EE-A3JI-06 15 90281315 90281315 C T WDR93 Silent p.I603I 0.35 TCGA-EE-A3JI-06 15 90281316 90281316 C A WDR93 Missense_Mutation p.Q604K 0.36 tolerated(0.79) benign(0.067) TCGA-EE-A3JI-06 15 91136933 91136933 C T CRTC3 Silent p.S99S 0.39 TCGA-EE-A3JI-06 15 91523621 91523621 T G PRC1 Splice_Site p.X275_splice 0.39 TCGA-EE-A3JI-06 15 92647730 92647730 C T SLCO3A1 Silent p.L323L 0.35 TCGA-EE-A3JI-06 15 95022306 95022306 G A MCTP2 3'UTR 0.05 TCGA-EE-A3JI-06 16 11361840 11361840 G A TNP2 3'UTR 0.87 TCGA-EE-A3JI-06 16 19498593 19498594 CT - TMC5 Frame_Shift_Del p.F842Pfs*22 0.27 TCGA-EE-A3JI-06 16 20702391 20702391 C T ACSM1 Nonsense_Mutation p.W40* 0.87 TCGA-EE-A3JI-06 16 2153633 2153633 G A PKD1 Missense_Mutation p.P2809S 0.36 probably_damaging(0.968) TCGA-EE-A3JI-06 16 22154060 22154060 A G VWA3A Missense_Mutation p.K856E 0.73 tolerated(0.27) benign(0.009) TCGA-EE-A3JI-06 16 23208738 23208738 G A SCNN1G Missense_Mutation p.G356E 0.86 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JI-06 16 28996652 28996652 C T LAT Intron 0.80 TCGA-EE-A3JI-06 16 30106190 30106190 C T YPEL3 Missense_Mutation p.E102K 0.86 deleterious(0.01) possibly_damaging(0.852) TCGA-EE-A3JI-06 16 30516734 30516734 G T ITGAL Nonsense_Mutation p.E773* 0.82 TCGA-EE-A3JI-06 16 30750006 30750006 C T SRCAP Missense_Mutation p.S2882L 0.90 unknown(0) TCGA-EE-A3JI-06 16 3254603 3254603 C T OR1F1 Silent p.A119A 0.84 TCGA-EE-A3JI-06 16 3613385 3613385 G A NLRC3 Missense_Mutation p.S565F 0.75 deleterious(0.02) possibly_damaging(0.541) TCGA-EE-A3JI-06 16 48385556 48385556 C T LONP2 Missense_Mutation p.P801L 0.78 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 16 57416246 57416246 G A CX3CL1 Missense_Mutation p.G166R 0.81 deleterious(0.03) benign(0.023) TCGA-EE-A3JI-06 16 597478 597478 C T CAPN15 Missense_Mutation p.P214S 0.81 tolerated_low_confidence(0.15) benign(0.002) TCGA-EE-A3JI-06 16 597479 597479 C T CAPN15 Missense_Mutation p.P214L 0.78 deleterious_low_confidence(0.03) benign(0.017) TCGA-EE-A3JI-06 16 67272181 67272182 CA - FHOD1 Frame_Shift_Del p.V157Afs*25 0.22 TCGA-EE-A3JI-06 16 67432187 67432187 G A ZDHHC1 Silent p.H285H 0.35 TCGA-EE-A3JI-06 16 67974200 67974200 G A LCAT Silent p.H310H 0.86 TCGA-EE-A3JI-06 16 69718851 69718851 C T NFAT5 Silent p.C584C 0.79 TCGA-EE-A3JI-06 16 70546163 70546163 G A COG4 Silent p.F239F 0.91 TCGA-EE-A3JI-06 16 70889118 70889118 G A HYDIN Missense_Mutation p.S4119F 0.75 benign(0.071) TCGA-EE-A3JI-06 16 71807192 71807193 TC - AP1G1 Frame_Shift_Del p.E133Dfs*37 0.26 TCGA-EE-A3JI-06 16 723704 723704 T C RHOT2 3'UTR 0.89 TCGA-EE-A3JI-06 16 72821894 72821894 G A ZFHX3 Silent p.T3427T 0.89 TCGA-EE-A3JI-06 16 72821895 72821895 G A ZFHX3 Missense_Mutation p.T3427I 0.89 unknown(0) TCGA-EE-A3JI-06 16 734758 734758 G A WDR24 Silent p.C783C 0.14 TCGA-EE-A3JI-06 16 7382979 7382979 G A RBFOX1 5'UTR 0.84 TCGA-EE-A3JI-06 16 74525028 74525028 G A GLG1 Silent p.I440I 0.83 TCGA-EE-A3JI-06 16 75147556 75147556 C T LDHD Silent p.E344E 0.80 TCGA-EE-A3JI-06 16 75651152 75651152 G A ADAT1 Silent p.L104L 0.88 TCGA-EE-A3JI-06 16 81181922 81181922 C T PKD1L2 RNA 0.85 TCGA-EE-A3JI-06 16 81219192 81219192 G A PKD1L2 5'Flank 0.92 TCGA-EE-A3JI-06 16 83636188 83636188 A C CDH13 Missense_Mutation p.T411P 0.82 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 16 83991322 83991322 C T OSGIN1 Missense_Mutation p.P16S 0.91 tolerated(0.13) probably_damaging(0.957) TCGA-EE-A3JI-06 16 83991323 83991323 C T OSGIN1 Missense_Mutation p.P16L 0.91 tolerated(0.06) probably_damaging(0.979) TCGA-EE-A3JI-06 16 89245980 89245980 C T CDH15 Nonsense_Mutation p.Q67* 0.77 TCGA-EE-A3JI-06 17 10215381 10215381 A G MYH13 Missense_Mutation p.W1460R 0.28 deleterious(0.04) probably_damaging(0.981) TCGA-EE-A3JI-06 17 10299903 10299903 C T MYH8 Missense_Mutation p.E1499K 0.32 deleterious(0) possibly_damaging(0.904) TCGA-EE-A3JI-06 17 10360752 10360752 G C MYH4 Missense_Mutation p.Q628E 0.04 tolerated(0.28) benign(0.001) TCGA-EE-A3JI-06 17 10443985 10443985 C T MYH2 Missense_Mutation p.D312N 0.55 deleterious(0.01) probably_damaging(0.973) TCGA-EE-A3JI-06 17 11593744 11593744 G T DNAH9 Missense_Mutation p.Q1535H 0.33 possibly_damaging(0.87) TCGA-EE-A3JI-06 17 16068475 16068475 C T NCOR1 Missense_Mutation p.D146N 0.12 benign(0.014) TCGA-EE-A3JI-06 17 16455387 16455387 G A ZNF287 Missense_Mutation p.S690L 0.24 tolerated(0.33) probably_damaging(0.99) TCGA-EE-A3JI-06 17 16527375 16527375 G A ZNF624 Silent p.P275P 0.23 TCGA-EE-A3JI-06 17 18181329 18181329 G - TOP3A Frame_Shift_Del p.N830Tfs*52 0.20 TCGA-EE-A3JI-06 17 18916692 18916692 G A SLC5A10 Missense_Mutation p.E334K 0.25 tolerated_low_confidence(0.77) benign(0.015) TCGA-EE-A3JI-06 17 19645957 19645957 C T ALDH3A1 Intron 0.30 TCGA-EE-A3JI-06 17 20805693 20805693 T C RP11-344E13.3 RNA 0.11 TCGA-EE-A3JI-06 17 20861666 20861666 G A RP11-381P6.1 RNA 0.44 TCGA-EE-A3JI-06 17 2090052 2090052 C T SMG6 Silent p.K1020K 0.25 TCGA-EE-A3JI-06 17 21319147 21319147 C T KCNJ12 Nonsense_Mutation p.Q165* 0.10 TCGA-EE-A3JI-06 17 2239757 2239757 C T TSR1 5'UTR 0.33 TCGA-EE-A3JI-06 17 2266817 2266817 G C SGSM2 Missense_Mutation p.R244P 0.25 deleterious(0.01) benign(0.104) TCGA-EE-A3JI-06 17 25783883 25783883 G A KSR1 Missense_Mutation p.E72K 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-EE-A3JI-06 17 25919417 25919417 A C KSR1 Missense_Mutation p.E250D 0.59 tolerated(0.18) benign(0.079) TCGA-EE-A3JI-06 17 26912209 26912209 T C SPAG5 Missense_Mutation p.S660G 0.58 tolerated(0.06) benign(0.054) TCGA-EE-A3JI-06 17 27209606 27209606 G A FLOT2 Silent p.L150L 0.53 TCGA-EE-A3JI-06 17 27233234 27233234 C T PHF12 Silent p.Q994Q 0.31 TCGA-EE-A3JI-06 17 27308664 27308664 C T SEZ6 Missense_Mutation p.R150Q 0.71 tolerated(0.68) benign(0.042) TCGA-EE-A3JI-06 17 28543164 28543164 G A SLC6A4 Missense_Mutation p.P303L 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 17 33310184 33310184 A G LIG3 Missense_Mutation p.K54E 0.25 tolerated_low_confidence(0.07) benign(0.003) TCGA-EE-A3JI-06 17 33806954 33806954 C T SLFN12L Missense_Mutation p.G92E 0.47 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 17 34182059 34182059 G A C17orf66 3'UTR 0.24 TCGA-EE-A3JI-06 17 35696766 35696766 C T ACACA Missense_Mutation p.R28K 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JI-06 17 36891605 36891605 G T PCGF2 Silent p.P302P 0.47 TCGA-EE-A3JI-06 17 37903214 37903214 C T GRB7 3'UTR 0.60 TCGA-EE-A3JI-06 17 3801800 3801800 G A P2RX1 Missense_Mutation p.S337F 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 17 38031532 38031532 T A ZPBP2 Missense_Mutation p.F245Y 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JI-06 17 38031558 38031558 C T ZPBP2 Missense_Mutation p.H254Y 0.47 deleterious(0.03) possibly_damaging(0.751) TCGA-EE-A3JI-06 17 38285607 38285607 C T MSL1 Missense_Mutation p.P105S 0.31 tolerated(0.98) benign(0.001) TCGA-EE-A3JI-06 17 38560420 38560420 G A TOP2A Missense_Mutation p.S756F 0.31 deleterious(0) possibly_damaging(0.853) TCGA-EE-A3JI-06 17 38927433 38927433 C T KRT26 Missense_Mutation p.R166K 0.24 deleterious(0.04) benign(0.106) TCGA-EE-A3JI-06 17 38927434 38927434 T A KRT26 Nonsense_Mutation p.R166* 0.24 TCGA-EE-A3JI-06 17 39165195 39165195 C T KRTAP3-1 Silent p.Q44Q 0.62 TCGA-EE-A3JI-06 17 39659586 39659586 C T KRT13 Missense_Mutation p.E230K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JI-06 17 39659657 39659657 G A KRT13 Missense_Mutation p.A206V 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-EE-A3JI-06 17 39777066 39777066 G A KRT17 Silent p.I342I 0.23 TCGA-EE-A3JI-06 17 40557273 40557273 G A PTRF Missense_Mutation p.S202L 0.48 deleterious(0) probably_damaging(0.947) TCGA-EE-A3JI-06 17 40844654 40844654 C T CNTNAP1 Nonsense_Mutation p.R890* 0.46 TCGA-EE-A3JI-06 17 40937371 40937371 G A WNK4 Silent p.E449E 0.38 TCGA-EE-A3JI-06 17 42928730 42928731 CT - EFTUD2 Frame_Shift_Del p.S944* 0.09 TCGA-EE-A3JI-06 17 43343978 43343978 G A SPATA32 5'Flank 0.41 TCGA-EE-A3JI-06 17 4445943 4445943 G A MYBBP1A Missense_Mutation p.P996S 0.65 tolerated(0.37) benign(0.053) TCGA-EE-A3JI-06 17 45421618 45421618 A C EFCAB13 Missense_Mutation p.K132Q 0.15 tolerated(0.06) probably_damaging(0.94) TCGA-EE-A3JI-06 17 45560407 45560407 G A MRPL45P2 RNA 0.32 TCGA-EE-A3JI-06 17 45897686 45897686 G A OSBPL7 5'UTR 0.28 TCGA-EE-A3JI-06 17 4645012 4645012 G A ZMYND15 Nonsense_Mutation p.W243* 0.36 TCGA-EE-A3JI-06 17 46990249 46990249 C T UBE2Z Silent p.F148F 0.37 TCGA-EE-A3JI-06 17 4794871 4794871 C A MINK1 Missense_Mutation p.P621T 0.23 deleterious(0.04) benign(0.217) TCGA-EE-A3JI-06 17 48212573 48212573 G A PPP1R9B 3'UTR 0.42 TCGA-EE-A3JI-06 17 48264888 48264888 C G COL1A1 Missense_Mutation p.G1127A 0.14 unknown(0) TCGA-EE-A3JI-06 17 4881825 4881825 G A CAMTA2 Missense_Mutation p.P603L 0.61 deleterious(0.02) benign(0.284) TCGA-EE-A3JI-06 17 49082620 49082620 G A SPAG9 Missense_Mutation p.R477W 0.43 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JI-06 17 4927260 4927260 A G KIF1C Silent p.G1042G 0.37 TCGA-EE-A3JI-06 17 4927261 4927261 G A KIF1C Missense_Mutation p.A1043T 0.37 tolerated_low_confidence(0.44) benign(0.001) TCGA-EE-A3JI-06 17 53471726 53471726 C T MMD Missense_Mutation p.R229Q 0.41 tolerated(0.6) benign(0.001) TCGA-EE-A3JI-06 17 55950091 55950091 G A CUEDC1 Silent p.F239F 0.41 TCGA-EE-A3JI-06 17 56599281 56599281 C T SEPT4 Intron 0.42 TCGA-EE-A3JI-06 17 56599282 56599282 C T SEPT4 Intron 0.41 TCGA-EE-A3JI-06 17 57774865 57774865 G A PTRH2 Silent p.L159L 0.42 TCGA-EE-A3JI-06 17 59485716 59485716 C T TBX2 Missense_Mutation p.A663V 0.39 tolerated(0.38) benign(0.075) TCGA-EE-A3JI-06 17 59761289 59761290 TC - BRIP1 Frame_Shift_Del p.K1040Dfs*4 0.16 TCGA-EE-A3JI-06 17 60493444 60493444 C T EFCAB3 Silent p.I409I 0.24 TCGA-EE-A3JI-06 17 61559941 61559941 G A ACE Silent p.G411G 0.44 TCGA-EE-A3JI-06 17 61877874 61877874 T G DDX42 Missense_Mutation p.V173G 0.41 tolerated(0.42) benign(0.079) TCGA-EE-A3JI-06 17 61897243 61897243 G A FTSJ3 Silent p.F821F 0.45 TCGA-EE-A3JI-06 17 62021184 62021184 C T SCN4A Silent p.T1313T 0.27 TCGA-EE-A3JI-06 17 62149380 62149380 G A ERN1 Missense_Mutation p.L147F 0.61 deleterious(0.03) benign(0.02) TCGA-EE-A3JI-06 17 65688735 65688735 G A PITPNC1 Missense_Mutation p.A244T 0.38 tolerated(0.05) possibly_damaging(0.617) TCGA-EE-A3JI-06 17 67151177 67151177 G A ABCA10 Missense_Mutation p.S1226F 0.33 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 17 6946980 6946980 G A SLC16A11 5'UTR 0.33 TCGA-EE-A3JI-06 17 695156 695156 C T RNMTL1 Silent p.A370A 0.32 TCGA-EE-A3JI-06 17 71165992 71165992 G A SSTR2 Missense_Mutation p.M178I 0.48 tolerated(0.5) benign(0.049) TCGA-EE-A3JI-06 17 71334792 71334792 G A SDK2 Silent p.Y2151Y 0.47 TCGA-EE-A3JI-06 17 71334793 71334793 T G SDK2 Missense_Mutation p.Y2151S 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EE-A3JI-06 17 71395348 71395348 C T SDK2 Missense_Mutation p.D1018N 0.44 tolerated(0.09) probably_damaging(0.993) TCGA-EE-A3JI-06 17 72308161 72308161 G A DNAI2 Missense_Mutation p.R505Q 0.35 deleterious(0.01) benign(0.222) TCGA-EE-A3JI-06 17 72736948 72736948 C T RAB37 Silent p.F50F 0.40 TCGA-EE-A3JI-06 17 72860302 72860302 C T FDXR Missense_Mutation p.A367T 0.46 tolerated(0.28) benign(0.036) TCGA-EE-A3JI-06 17 72915871 72915871 C T USH1G Missense_Mutation p.D354N 0.44 tolerated(0.38) benign(0.001) TCGA-EE-A3JI-06 17 73178981 73178981 C T SUMO2 5'UTR 0.48 TCGA-EE-A3JI-06 17 73568065 73568065 G A LLGL2 Missense_Mutation p.E794K 0.32 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 17 74036529 74036530 TC - SRP68 Frame_Shift_Del p.E542Dfs*10 0.12 TCGA-EE-A3JI-06 17 74475857 74475857 G A RHBDF2 Missense_Mutation p.P106L 0.46 deleterious_low_confidence(0.02) benign(0.005) TCGA-EE-A3JI-06 17 75210149 75210149 C T SEC14L1 Intron 0.51 TCGA-EE-A3JI-06 17 7579545 7579545 C T TP53 Missense_Mutation p.D48N 0.59 tolerated(0.26) benign(0.023) TCGA-EE-A3JI-06 17 76083028 76083028 C T TNRC6C Missense_Mutation p.P1216L 0.45 deleterious(0) possibly_damaging(0.651) TCGA-EE-A3JI-06 17 76462806 76462806 G A DNAH17 Silent p.F2943F 0.44 TCGA-EE-A3JI-06 17 7678084 7678084 G A DNAH2 Silent p.L1503L 0.59 TCGA-EE-A3JI-06 17 76803431 76803431 C T USP36 Silent p.G565G 0.48 TCGA-EE-A3JI-06 17 7696447 7696447 C T DNAH2 Missense_Mutation p.P2498L 0.53 possibly_damaging(0.788) TCGA-EE-A3JI-06 17 7696448 7696448 C T DNAH2 Silent p.P2498P 0.53 TCGA-EE-A3JI-06 17 78293183 78293183 C T RNF213 Intron 0.42 TCGA-EE-A3JI-06 17 78388971 78388971 G A ENDOV 5'UTR 0.24 TCGA-EE-A3JI-06 17 79410078 79410078 C T RP11-1055B8.7 Missense_Mutation p.S568F 0.37 probably_damaging(0.996) TCGA-EE-A3JI-06 17 79536116 79536116 C T NPLOC4 Missense_Mutation p.D459N 0.10 tolerated(0.23) possibly_damaging(0.661) TCGA-EE-A3JI-06 17 79880485 79880485 G A MAFG Missense_Mutation p.S162L 0.44 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EE-A3JI-06 17 79941490 79941490 T C ASPSCR1 Silent p.N73N 0.17 TCGA-EE-A3JI-06 17 8020163 8020163 T G ALOXE3 Missense_Mutation p.S227R 0.18 tolerated(0.61) benign(0.068) TCGA-EE-A3JI-06 17 80373289 80373289 G A OGFOD3 Missense_Mutation p.H97Y 0.22 tolerated(0.49) benign(0.009) TCGA-EE-A3JI-06 17 80422298 80422298 C T NARF Missense_Mutation p.L82F 0.49 tolerated(0.09) benign(0.157) TCGA-EE-A3JI-06 17 80674587 80674587 G A FN3KRP 5'UTR 0.27 TCGA-EE-A3JI-06 17 80684907 80684907 C T FN3KRP Missense_Mutation p.H264Y 0.52 tolerated(0.06) probably_damaging(1) TCGA-EE-A3JI-06 17 8141772 8141772 C T CTC1 Missense_Mutation p.E125K 0.58 tolerated(0.53) possibly_damaging(0.851) TCGA-EE-A3JI-06 17 8738697 8738697 G A PIK3R6 Nonsense_Mutation p.Q180* 0.39 TCGA-EE-A3JI-06 17 9580154 9580154 C T USP43 Silent p.L309L 0.64 TCGA-EE-A3JI-06 17 9808452 9808452 C T RCVRN Missense_Mutation p.E16K 0.27 deleterious(0.01) benign(0.063) TCGA-EE-A3JI-06 18 19996144 19996144 C T CTAGE1 Missense_Mutation p.G544E 0.43 deleterious(0.01) benign(0.351) TCGA-EE-A3JI-06 18 19996503 19996503 G A CTAGE1 Silent p.L424L 0.54 TCGA-EE-A3JI-06 18 2847860 2847860 G A EMILIN2 Missense_Mutation p.G63E 0.30 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 18 28598151 28598151 T A DSC3 Missense_Mutation p.L383F 0.21 deleterious(0.01) possibly_damaging(0.815) TCGA-EE-A3JI-06 18 28598157 28598157 C T DSC3 Silent p.K381K 0.23 TCGA-EE-A3JI-06 18 28919905 28919905 G A DSG1 Missense_Mutation p.G535E 0.51 tolerated(0.35) benign(0.001) TCGA-EE-A3JI-06 18 3112368 3112368 G A MYOM1 Nonsense_Mutation p.R1116* 0.67 TCGA-EE-A3JI-06 18 33800122 33800122 C T MOCOS Silent p.L634L 0.18 TCGA-EE-A3JI-06 18 43204606 43204606 G A SLC14A2 5'UTR 0.65 TCGA-EE-A3JI-06 18 44268743 44268743 G A ST8SIA5 Missense_Mutation p.P151S 0.30 probably_damaging(0.933) TCGA-EE-A3JI-06 18 44559301 44559301 C T TCEB3B 3'UTR 0.71 TCGA-EE-A3JI-06 18 49867094 49867095 GA - DCC 5'UTR 0.16 TCGA-EE-A3JI-06 18 52596091 52596091 C T CCDC68 Missense_Mutation p.R208K 0.21 tolerated(1) benign(0.003) TCGA-EE-A3JI-06 18 55240527 55240527 G A FECH Missense_Mutation p.L95F 0.38 deleterious(0) probably_damaging(0.986) TCGA-EE-A3JI-06 18 56390306 56390306 G A MALT1 Missense_Mutation p.G349R 0.33 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 18 59931274 59931274 C T KIAA1468 Silent p.I801I 0.56 TCGA-EE-A3JI-06 18 61570432 61570432 A G SERPINB2 Missense_Mutation p.T381A 0.26 tolerated(0.5) possibly_damaging(0.688) TCGA-EE-A3JI-06 18 61585313 61585313 G A SERPINB10 Missense_Mutation p.E117K 0.26 deleterious(0) probably_damaging(0.957) TCGA-EE-A3JI-06 18 72186208 72186208 C T CNDP2 Missense_Mutation p.T412I 0.25 tolerated(0.09) possibly_damaging(0.877) TCGA-EE-A3JI-06 18 77227603 77227603 G A NFATC1 Intron 0.27 TCGA-EE-A3JI-06 19 10089263 10089263 G A COL5A3 Missense_Mutation p.P1002L 0.36 possibly_damaging(0.713) TCGA-EE-A3JI-06 19 1046245 1046245 C A ABCA7 Missense_Mutation p.P488T 0.17 deleterious(0) possibly_damaging(0.849) TCGA-EE-A3JI-06 19 11034639 11034639 C A YIPF2 Missense_Mutation p.W174L 0.34 deleterious(0.02) probably_damaging(0.988) TCGA-EE-A3JI-06 19 12461038 12461038 G C ZNF442 Missense_Mutation p.T454S 0.21 tolerated(0.19) benign(0.331) TCGA-EE-A3JI-06 19 12691741 12691741 G A ZNF490 Missense_Mutation p.T383I 0.47 tolerated(0.22) benign(0.175) TCGA-EE-A3JI-06 19 12865573 12865573 C T BEST2 Missense_Mutation p.P152L 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 19 13363901 13363902 AG - CACNA1A Frame_Shift_Del p.S1590Cfs*4 0.12 TCGA-EE-A3JI-06 19 13476136 13476136 C T CACNA1A Missense_Mutation p.G260E 0.22 probably_damaging(0.988) TCGA-EE-A3JI-06 19 1360579 1360579 A G MUM1 Missense_Mutation p.N221S 0.17 tolerated(0.41) benign(0.015) TCGA-EE-A3JI-06 19 14866667 14866668 GA C EMR2 Frame_Shift_Del p.V405Gfs*44 0.30 TCGA-EE-A3JI-06 19 15511842 15511843 TC - AKAP8L Frame_Shift_Del p.K277Efs*8 0.22 TCGA-EE-A3JI-06 19 16006377 16006377 G A CYP4F2 Silent p.P94P 0.43 TCGA-EE-A3JI-06 19 16038256 16038256 G A CYP4F11 Silent p.F127F 0.46 TCGA-EE-A3JI-06 19 16045048 16045048 C T CYP4F11 Silent p.Q57Q 0.42 TCGA-EE-A3JI-06 19 16268289 16268289 G A HSH2D 3'Flank 0.25 TCGA-EE-A3JI-06 19 16275677 16275677 C T CIB3 Missense_Mutation p.V132M 0.38 deleterious(0) possibly_damaging(0.794) TCGA-EE-A3JI-06 19 17036182 17036182 C T CPAMD8 Missense_Mutation p.G1171E 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 19 18331234 18331234 C T PDE4C Silent p.V229V 0.39 TCGA-EE-A3JI-06 19 18377054 18377054 G A KIAA1683 Silent p.S432S 0.34 TCGA-EE-A3JI-06 19 18377055 18377055 G A KIAA1683 Missense_Mutation p.S432F 0.34 deleterious(0.04) benign(0.091) TCGA-EE-A3JI-06 19 19165058 19165058 G A ARMC6 Silent p.G317G 0.05 TCGA-EE-A3JI-06 19 1979046 1979046 G A CSNK1G2 Silent p.L212L 0.23 TCGA-EE-A3JI-06 19 22156771 22156771 G A ZNF208 Silent p.I355I 0.25 TCGA-EE-A3JI-06 19 22271759 22271759 G A ZNF257 Missense_Mutation p.D403N 0.55 deleterious(0.01) benign(0.21) TCGA-EE-A3JI-06 19 22363477 22363477 G A ZNF676 Nonsense_Mutation p.R348* 0.09 TCGA-EE-A3JI-06 19 22939770 22939770 C T ZNF99 3'Flank 0.39 TCGA-EE-A3JI-06 19 23543655 23543655 G A ZNF91 Missense_Mutation p.A709V 0.43 deleterious(0) benign(0.206) TCGA-EE-A3JI-06 19 2833848 2833848 C T ZNF554 Silent p.S205S 0.19 TCGA-EE-A3JI-06 19 30193611 30193611 G A C19orf12 3'UTR 0.49 TCGA-EE-A3JI-06 19 31038981 31038981 C T ZNF536 Nonsense_Mutation p.Q819* 0.40 TCGA-EE-A3JI-06 19 3381966 3381966 T G NFIC Missense_Mutation p.I96S 0.43 deleterious(0) probably_damaging(0.932) TCGA-EE-A3JI-06 19 33980919 33980919 G A PEPD Silent p.S162S 0.32 TCGA-EE-A3JI-06 19 35660481 35660481 G A FXYD5 Missense_Mutation p.R167K 0.42 deleterious(0.02) probably_damaging(0.973) TCGA-EE-A3JI-06 19 35790527 35790527 G A MAG Silent p.P162P 0.34 TCGA-EE-A3JI-06 19 36211255 36211255 T G KMT2B Missense_Mutation p.W336G 0.52 unknown(0) TCGA-EE-A3JI-06 19 36211256 36211256 G T KMT2B Missense_Mutation p.W336L 0.52 unknown(0) TCGA-EE-A3JI-06 19 36351246 36351246 G A KIRREL2 Missense_Mutation p.G241R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 19 3639003 3639003 G A PIP5K1C Missense_Mutation p.S600F 0.46 deleterious_low_confidence(0.01) benign(0.121) TCGA-EE-A3JI-06 19 36616592 36616592 G A TBCB Missense_Mutation p.E215K 0.44 deleterious(0.01) benign(0.421) TCGA-EE-A3JI-06 19 3739121 3739121 C T TJP3 Silent p.P549P 0.47 TCGA-EE-A3JI-06 19 38102879 38102879 A C ZNF540 Missense_Mutation p.H233P 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 19 38937408 38937408 G A RYR1 Missense_Mutation p.S267N 0.21 probably_damaging(0.968) TCGA-EE-A3JI-06 19 38974064 38974064 G A RYR1 Silent p.V1614V 0.35 TCGA-EE-A3JI-06 19 39070657 39070657 C T RYR1 Silent p.S4800S 0.43 TCGA-EE-A3JI-06 19 39086356 39086356 C T MAP4K1 Silent p.L731L 0.44 TCGA-EE-A3JI-06 19 39214582 39214583 AG - ACTN4 Frame_Shift_Del p.K521Afs*43 0.11 TCGA-EE-A3JI-06 19 39734710 39734710 C T IFNL3 Missense_Mutation p.G116R 0.50 tolerated(0.16) benign(0.421) TCGA-EE-A3JI-06 19 4024062 4024062 G A PIAS4 Silent p.E161E 0.20 TCGA-EE-A3JI-06 19 40366207 40366207 C T FCGBP Missense_Mutation p.G4676D 0.29 probably_damaging(1) TCGA-EE-A3JI-06 19 40366208 40366208 C T FCGBP Missense_Mutation p.G4676S 0.27 probably_damaging(1) TCGA-EE-A3JI-06 19 40411976 40411976 C T FCGBP Missense_Mutation p.E1218K 0.39 possibly_damaging(0.557) TCGA-EE-A3JI-06 19 40424134 40424134 G A FCGBP Missense_Mutation p.T690I 0.46 benign(0.115) TCGA-EE-A3JI-06 19 40433232 40433232 T G FCGBP Missense_Mutation p.Y346S 0.35 possibly_damaging(0.63) TCGA-EE-A3JI-06 19 40477076 40477076 C T PSMC4 5'UTR 0.17 TCGA-EE-A3JI-06 19 40873681 40873681 C T PLD3 Silent p.A108A 0.38 TCGA-EE-A3JI-06 19 41916745 41916745 C T BCKDHA Intron 0.47 TCGA-EE-A3JI-06 19 4290474 4290474 C T SHD Silent p.F289F 0.40 TCGA-EE-A3JI-06 19 4323691 4323691 G A FSD1 3'UTR 0.27 TCGA-EE-A3JI-06 19 43237099 43237099 C T PSG3 Missense_Mutation p.M182I 0.45 tolerated(1) benign(0.004) TCGA-EE-A3JI-06 19 43348586 43348586 C T PSG10P RNA 0.41 TCGA-EE-A3JI-06 19 43411785 43411785 C T PSG6 Missense_Mutation p.E310K 0.44 tolerated(0.29) probably_damaging(0.936) TCGA-EE-A3JI-06 19 43420636 43420636 G A PSG6 Missense_Mutation p.S23L 0.43 tolerated(0.07) benign(0.065) TCGA-EE-A3JI-06 19 43698525 43698525 C T PSG4 Missense_Mutation p.E404K 0.43 tolerated(0.31) possibly_damaging(0.728) TCGA-EE-A3JI-06 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.46 tolerated(0.29) possibly_damaging(0.621) TCGA-EE-A3JI-06 19 44130302 44130305 TGCT - CADM4 Frame_Shift_Del p.K212Rfs*23 0.25 TCGA-EE-A3JI-06 19 44235672 44235672 G A SMG9 3'UTR 0.23 TCGA-EE-A3JI-06 19 44235673 44235673 G A SMG9 3'UTR 0.27 TCGA-EE-A3JI-06 19 44384217 44384217 C T ZNF404 Silent p.Q27Q 0.15 TCGA-EE-A3JI-06 19 44739863 44739864 AG - ZNF227 Frame_Shift_Del p.R428Sfs*11 0.17 TCGA-EE-A3JI-06 19 4475575 4475575 C T HDGFRP2 Missense_Mutation p.P95S 0.24 deleterious(0) possibly_damaging(0.803) TCGA-EE-A3JI-06 19 4475576 4475576 C T HDGFRP2 Missense_Mutation p.P95L 0.24 deleterious(0) possibly_damaging(0.851) TCGA-EE-A3JI-06 19 45211459 45211459 C T CEACAM16 Missense_Mutation p.P423S 0.26 deleterious(0.04) benign(0.003) TCGA-EE-A3JI-06 19 45924575 45924575 G A ERCC1 Missense_Mutation p.A61V 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-EE-A3JI-06 19 47422232 47422232 T A ARHGAP35 Silent p.I100I 0.44 TCGA-EE-A3JI-06 19 47422233 47422233 G T ARHGAP35 Missense_Mutation p.D101Y 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 19 474703 474703 G A ODF3L2 Silent p.A15A 0.55 TCGA-EE-A3JI-06 19 47823709 47823709 C T C5AR1 Silent p.I225I 0.42 TCGA-EE-A3JI-06 19 47823716 47823716 C T C5AR1 Missense_Mutation p.R228W 0.45 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 19 47991484 47991484 G T NAPA 3'UTR 0.41 TCGA-EE-A3JI-06 19 48542572 48542572 C T CABP5 Missense_Mutation p.G81S 0.40 deleterious(0.05) benign(0.118) TCGA-EE-A3JI-06 19 48789236 48789236 C A ZNF114 Missense_Mutation p.P119T 0.47 tolerated(0.68) benign(0.002) TCGA-EE-A3JI-06 19 48908545 48908545 C T GRIN2D Silent p.F340F 0.52 TCGA-EE-A3JI-06 19 49227692 49227692 G A RASIP1 Silent p.L816L 0.37 TCGA-EE-A3JI-06 19 49388759 49388759 G T TULP2 Missense_Mutation p.S336Y 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 19 49573328 49573328 C T KCNA7 Missense_Mutation p.E455K 0.44 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-EE-A3JI-06 19 49700100 49700100 C T TRPM4 Missense_Mutation p.L872F 0.21 deleterious(0.01) possibly_damaging(0.875) TCGA-EE-A3JI-06 19 50285961 50285961 C T AP2A1 Silent p.I151I 0.49 TCGA-EE-A3JI-06 19 50462012 50462012 G A SIGLEC11 Silent p.D417D 0.46 TCGA-EE-A3JI-06 19 51361825 51361825 T C KLK3 Missense_Mutation p.W202R 0.45 tolerated(0.15) benign(0.012) TCGA-EE-A3JI-06 19 5144378 5144378 C T KDM4B Silent p.F952F 0.39 TCGA-EE-A3JI-06 19 51633391 51633391 G A SIGLEC9 Intron 0.47 TCGA-EE-A3JI-06 19 52147175 52147175 C T SIGLEC14 Missense_Mutation p.G290E 0.38 deleterious(0.01) benign(0.055) TCGA-EE-A3JI-06 19 52538277 52538277 G A ZNF432 Nonsense_Mutation p.Q219* 0.42 TCGA-EE-A3JI-06 19 52825826 52825826 C G ZNF480 Silent p.G441G 0.37 TCGA-EE-A3JI-06 19 52825827 52825827 C T ZNF480 Missense_Mutation p.L442F 0.36 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JI-06 19 52941539 52941539 G A ZNF534 Missense_Mutation p.G289R 0.41 deleterious(0) benign(0.077) TCGA-EE-A3JI-06 19 53270527 53270527 G A ZNF600 Missense_Mutation p.S161F 0.40 deleterious(0.01) possibly_damaging(0.823) TCGA-EE-A3JI-06 19 53304559 53304559 A G ZNF28 Missense_Mutation p.I180T 0.20 tolerated(0.09) probably_damaging(0.983) TCGA-EE-A3JI-06 19 54314540 54314540 G A NLRP12 Missense_Mutation p.P125S 0.44 tolerated(0.4) benign(0.209) TCGA-EE-A3JI-06 19 54804141 54804141 G A LILRA3 Silent p.L11L 0.53 TCGA-EE-A3JI-06 19 55142046 55142046 C T LILRB1 5'UTR 0.40 TCGA-EE-A3JI-06 19 55221496 55221496 C T AC098784.2 3'Flank 0.43 TCGA-EE-A3JI-06 19 55607648 55607648 G A PPP1R12C Missense_Mutation p.S336F 0.43 tolerated(0.64) possibly_damaging(0.732) TCGA-EE-A3JI-06 19 56243965 56243965 G A NLRP9 Missense_Mutation p.S411F 0.35 tolerated(0.09) benign(0.032) TCGA-EE-A3JI-06 19 56244405 56244405 C T NLRP9 Silent p.K264K 0.24 TCGA-EE-A3JI-06 19 56329301 56329301 A G NLRP11 Silent p.D80D 0.41 TCGA-EE-A3JI-06 19 56329306 56329306 C T NLRP11 Missense_Mutation p.E79K 0.42 tolerated(1) benign(0.002) TCGA-EE-A3JI-06 19 56473497 56473497 G A NLRP8 Missense_Mutation p.D703N 0.36 deleterious(0.01) benign(0.104) TCGA-EE-A3JI-06 19 57325976 57325976 T G PEG3 Missense_Mutation p.E1278D 0.40 tolerated(0.16) possibly_damaging(0.571) TCGA-EE-A3JI-06 19 58101376 58101376 C T ZIK1 Intron 0.17 TCGA-EE-A3JI-06 19 58101723 58101723 C T ZIK1 Missense_Mutation p.L182F 0.42 tolerated(0.6) benign(0.007) TCGA-EE-A3JI-06 19 58565289 58565289 G A ZSCAN1 Missense_Mutation p.G366E 0.43 tolerated(0.57) possibly_damaging(0.559) TCGA-EE-A3JI-06 19 58868600 58868609 GTACGGCTTC - ZNF497 Frame_Shift_Del p.K132Rfs*53 0.42 TCGA-EE-A3JI-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.43 TCGA-EE-A3JI-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.43 deleterious(0) possibly_damaging(0.891) TCGA-EE-A3JI-06 19 6737602 6737602 C T GPR108 5'UTR 0.21 TCGA-EE-A3JI-06 19 7584289 7584289 C T ZNF358 Missense_Mutation p.P54L 0.48 tolerated(0.13) benign(0.026) TCGA-EE-A3JI-06 19 8402739 8402739 C T KANK3 Intron 0.36 TCGA-EE-A3JI-06 19 8808333 8808333 C T ACTL9 Missense_Mutation p.G240D 0.44 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 19 8974052 8974052 G A MUC16 Missense_Mutation p.H14207Y 0.33 probably_damaging(0.979) TCGA-EE-A3JI-06 19 9000146 9000146 C T MUC16 Splice_Site p.X13537_splice 0.46 TCGA-EE-A3JI-06 19 9049484 9049484 G A MUC16 Missense_Mutation p.P10716L 0.46 benign(0.007) TCGA-EE-A3JI-06 19 9058095 9058095 G A MUC16 Missense_Mutation p.P9784L 0.52 unknown(0) TCGA-EE-A3JI-06 19 9060904 9060904 C T MUC16 Missense_Mutation p.E8848K 0.43 unknown(0) TCGA-EE-A3JI-06 19 9063559 9063559 G A MUC16 Missense_Mutation p.P7963S 0.47 unknown(0) TCGA-EE-A3JI-06 19 9067908 9067908 G A MUC16 Missense_Mutation p.S6513F 0.55 unknown(0) TCGA-EE-A3JI-06 19 9077809 9077809 C T MUC16 Missense_Mutation p.E3213K 0.47 unknown(0) TCGA-EE-A3JI-06 19 9083035 9083035 G A MUC16 Missense_Mutation p.S2927F 0.46 unknown(0) TCGA-EE-A3JI-06 19 9091429 9091429 G A MUC16 Missense_Mutation p.P129L 0.34 unknown(0) TCGA-EE-A3JI-06 19 9091430 9091430 G A MUC16 Missense_Mutation p.P129S 0.32 unknown(0) TCGA-EE-A3JI-06 1 103467999 103467999 C T COL11A1 Silent p.G694G 0.33 TCGA-EE-A3JI-06 1 10702984 10702984 G A CASZ1 Missense_Mutation p.S1365F 0.64 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EE-A3JI-06 1 108700206 108700206 C T SLC25A24 Missense_Mutation p.E183K 0.60 deleterious(0) possibly_damaging(0.694) TCGA-EE-A3JI-06 1 109479818 109479819 TC - CLCC1 Frame_Shift_Del p.E421Dfs*8 0.11 TCGA-EE-A3JI-06 1 110148980 110148980 T A GNAT2 Missense_Mutation p.K180N 0.62 deleterious(0) probably_damaging(0.962) TCGA-EE-A3JI-06 1 110255836 110255836 G A GSTM5 Intron 0.21 TCGA-EE-A3JI-06 1 112525084 112525084 C T KCND3 Missense_Mutation p.E89K 0.24 tolerated(0.05) benign(0.055) TCGA-EE-A3JI-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.60 deleterious(0.01) benign(0.045) TCGA-EE-A3JI-06 1 116941601 116941601 C T ATP1A1 Silent p.T781T 0.23 TCGA-EE-A3JI-06 1 11889301 11889302 TG - CLCN6 Frame_Shift_Del p.V391Gfs*19 0.25 TCGA-EE-A3JI-06 1 119575764 119575764 G A WARS2 Missense_Mutation p.L285F 0.68 deleterious(0.04) possibly_damaging(0.588) TCGA-EE-A3JI-06 1 12785286 12785286 G A AADACL3 Missense_Mutation p.D126N 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-EE-A3JI-06 1 12907612 12907612 A C HNRNPCL1 Silent p.G177G 0.70 TCGA-EE-A3JI-06 1 144892124 144892124 G A PDE4DIP Intron 0.30 TCGA-EE-A3JI-06 1 149760129 149760129 G A FCGR1A Missense_Mutation p.G172E 0.33 tolerated(0.1) probably_damaging(0.994) TCGA-EE-A3JI-06 1 150601956 150601956 G A ENSA 5'UTR 0.55 TCGA-EE-A3JI-06 1 150922936 150922936 C T SETDB1 Missense_Mutation p.S528L 0.41 tolerated(0.69) benign(0) TCGA-EE-A3JI-06 1 150923080 150923080 A G SETDB1 Missense_Mutation p.H576R 0.30 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 1 150981011 150981011 C T PRUNE 5'UTR 0.56 TCGA-EE-A3JI-06 1 152185671 152185671 A G HRNR Missense_Mutation p.Y2812H 0.03 unknown(0) TCGA-EE-A3JI-06 1 152279071 152279071 C T FLG Missense_Mutation p.G2764E 0.18 benign(0.188) TCGA-EE-A3JI-06 1 152733041 152733041 G A KPRP Missense_Mutation p.R326Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 1 153043066 153043066 C T SPRR2B 3'UTR 0.35 TCGA-EE-A3JI-06 1 153065978 153065978 C T SPRR2E 3'UTR 0.33 TCGA-EE-A3JI-06 1 153317847 153317847 C T PGLYRP4 Missense_Mutation p.D51N 0.40 tolerated(0.17) benign(0.101) TCGA-EE-A3JI-06 1 153791335 153791335 C T GATAD2B Missense_Mutation p.E177K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 1 153954742 153954742 G A RAB13 Intron 0.41 TCGA-EE-A3JI-06 1 153965405 153965405 A G NUP210L Missense_Mutation p.F1858S 0.53 tolerated(0.11) benign(0.002) TCGA-EE-A3JI-06 1 154130056 154130056 G A NUP210L 5'Flank 0.48 TCGA-EE-A3JI-06 1 154247884 154247884 C T HAX1 Missense_Mutation p.R227W 0.32 deleterious(0.03) benign(0.063) TCGA-EE-A3JI-06 1 154456751 154456751 C T SHE Silent p.L454L 0.54 TCGA-EE-A3JI-06 1 154942595 154942595 G C SHC1 Silent p.R136R 0.35 TCGA-EE-A3JI-06 1 155206068 155206068 G A GBA Nonsense_Mutation p.R398* 0.32 TCGA-EE-A3JI-06 1 155289723 155289723 C T FDPS Intron 0.32 TCGA-EE-A3JI-06 1 155289724 155289724 C T FDPS Intron 0.32 TCGA-EE-A3JI-06 1 155642454 155642454 G A YY1AP1 Silent p.T298T 0.18 TCGA-EE-A3JI-06 1 156216477 156216477 G A PAQR6 5'UTR 0.38 TCGA-EE-A3JI-06 1 156216478 156216478 G A PAQR6 5'UTR 0.38 TCGA-EE-A3JI-06 1 156263217 156263217 G A C1orf85 Missense_Mutation p.P317S 0.53 tolerated(0.61) benign(0.006) TCGA-EE-A3JI-06 1 156351701 156351701 G A RHBG Silent p.G315G 0.54 TCGA-EE-A3JI-06 1 156352044 156352044 C T RHBG Intron 0.66 TCGA-EE-A3JI-06 1 156640164 156640164 G A NES Silent p.P1272P 0.50 TCGA-EE-A3JI-06 1 156640165 156640165 G A NES Missense_Mutation p.P1272L 0.50 deleterious(0) possibly_damaging(0.804) TCGA-EE-A3JI-06 1 156883768 156883768 G A PEAR1 Missense_Mutation p.M946I 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-EE-A3JI-06 1 157557226 157557226 G A FCRL4 Silent p.F229F 0.54 TCGA-EE-A3JI-06 1 157667389 157667389 C T FCRL3 Intron 0.47 TCGA-EE-A3JI-06 1 158725283 158725283 G A OR6K6 Silent p.V226V 0.39 TCGA-EE-A3JI-06 1 158746477 158746477 G A OR6N2 Missense_Mutation p.L317F 0.42 deleterious_low_confidence(0) unknown(0) TCGA-EE-A3JI-06 1 159410025 159410025 C T OR10J1 Silent p.A159A 0.36 TCGA-EE-A3JI-06 1 159779373 159779373 C T FCRL6 Silent p.L262L 0.45 TCGA-EE-A3JI-06 1 16063163 16063163 C T SLC25A34 Silent p.A61A 0.57 TCGA-EE-A3JI-06 1 16063164 16063164 C T SLC25A34 Nonsense_Mutation p.R62* 0.61 TCGA-EE-A3JI-06 1 160851992 160851992 C T ITLN1 Missense_Mutation p.G54S 0.42 deleterious(0) possibly_damaging(0.897) TCGA-EE-A3JI-06 1 161654981 161654981 C T RPL31P11 RNA 0.43 TCGA-EE-A3JI-06 1 161677099 161677099 C T FCRLA Silent p.S32S 0.59 TCGA-EE-A3JI-06 1 167096626 167096626 G A DUSP27 Missense_Mutation p.S753N 0.38 deleterious(0.01) possibly_damaging(0.848) TCGA-EE-A3JI-06 1 167852752 167852752 G A ADCY10 Nonsense_Mutation p.Q315* 0.42 TCGA-EE-A3JI-06 1 168066367 168066367 G A GPR161 Silent p.L180L 0.32 TCGA-EE-A3JI-06 1 17046488 17046488 G A ESPNP RNA 0.16 TCGA-EE-A3JI-06 1 172628356 172628356 C T FASLG Silent p.F5F 0.41 TCGA-EE-A3JI-06 1 173776424 173776424 G A CENPL Missense_Mutation p.P134L 0.31 deleterious(0.02) possibly_damaging(0.737) TCGA-EE-A3JI-06 1 173939703 173939703 C T RC3H1 Missense_Mutation p.R425K 0.48 tolerated(0.79) benign(0.062) TCGA-EE-A3JI-06 1 175362936 175362936 C T TNR Missense_Mutation p.E446K 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-EE-A3JI-06 1 175375791 175375791 G A TNR Silent p.I20I 0.36 TCGA-EE-A3JI-06 1 176564117 176564117 C T PAPPA2 Silent p.S459S 0.52 TCGA-EE-A3JI-06 1 176640206 176640206 G A PAPPA2 Missense_Mutation p.G698S 0.39 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 1 176709278 176709278 C T PAPPA2 Missense_Mutation p.S1366L 0.28 tolerated(0.72) benign(0.004) TCGA-EE-A3JI-06 1 176845761 176845761 C T ASTN1 Nonsense_Mutation p.W1125* 0.41 TCGA-EE-A3JI-06 1 179095686 179095687 GT - ABL2 Frame_Shift_Del p.H171Lfs*13 0.27 TCGA-EE-A3JI-06 1 179380307 179380307 A C AXDND1 Missense_Mutation p.Y379S 0.49 deleterious(0) probably_damaging(0.961) TCGA-EE-A3JI-06 1 181727965 181727965 C T CACNA1E Silent p.S1522S 0.41 TCGA-EE-A3JI-06 1 181762858 181762858 C T CACNA1E Missense_Mutation p.P1986S 0.41 tolerated(0.05) benign(0.035) TCGA-EE-A3JI-06 1 181765849 181765849 G A CACNA1E Missense_Mutation p.R2085Q 0.46 deleterious(0.01) possibly_damaging(0.614) TCGA-EE-A3JI-06 1 183085947 183085947 T C LAMC1 Silent p.G491G 0.50 TCGA-EE-A3JI-06 1 183498584 183498584 T C SMG7 Silent p.F253F 0.68 TCGA-EE-A3JI-06 1 185269669 185269669 C A IVNS1ABP Missense_Mutation p.C381F 0.27 deleterious(0) probably_damaging(0.942) TCGA-EE-A3JI-06 1 185270669 185270669 A G IVNS1ABP Silent p.H264H 0.16 TCGA-EE-A3JI-06 1 18702887 18702887 C T IGSF21 Nonsense_Mutation p.Q367* 0.28 TCGA-EE-A3JI-06 1 196397274 196397274 C T KCNT2 Missense_Mutation p.M315I 0.21 deleterious(0.03) probably_damaging(0.943) TCGA-EE-A3JI-06 1 196461411 196461411 G A KCNT2 Silent p.F52F 0.58 TCGA-EE-A3JI-06 1 196953106 196953106 C T CFHR5 Missense_Mutation p.P90L 0.34 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JI-06 1 196965187 196965187 G A CFHR5 Missense_Mutation p.E276K 0.38 tolerated(0.17) benign(0.004) TCGA-EE-A3JI-06 1 200522470 200522471 TC - KIF14 3'UTR 0.18 TCGA-EE-A3JI-06 1 201777790 201777790 C T NAV1 Intron 0.51 TCGA-EE-A3JI-06 1 202117655 202117655 C T PTPN7 3'UTR 0.50 TCGA-EE-A3JI-06 1 204197881 204197881 T C PLEKHA6 Missense_Mutation p.I954V 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-EE-A3JI-06 1 204379631 204379631 G A PPP1R15B Silent p.F303F 0.50 TCGA-EE-A3JI-06 1 20471157 20471157 C T PLA2G2F Silent p.I133I 0.23 TCGA-EE-A3JI-06 1 205211090 205211090 C T TMCC2 Missense_Mutation p.S222F 0.43 deleterious(0.03) probably_damaging(0.982) TCGA-EE-A3JI-06 1 205280897 205280897 G A NUAK2 Silent p.H96H 0.06 TCGA-EE-A3JI-06 1 205308423 205308423 G A KLHDC8A Missense_Mutation p.T219I 0.27 tolerated(0.24) benign(0.001) TCGA-EE-A3JI-06 1 205899048 205899048 G C SLC26A9 Missense_Mutation p.S230C 0.46 deleterious(0.01) probably_damaging(0.967) TCGA-EE-A3JI-06 1 206230980 206230980 C T AVPR1B Silent p.S371S 0.62 TCGA-EE-A3JI-06 1 206230981 206230981 C T AVPR1B Missense_Mutation p.L372F 0.56 tolerated(0.15) benign(0.018) TCGA-EE-A3JI-06 1 206681268 206681268 G A RASSF5 Silent p.Q111Q 0.40 TCGA-EE-A3JI-06 1 206776555 206776555 C T EIF2D Silent p.R178R 0.45 TCGA-EE-A3JI-06 1 206821040 206821040 C T DYRK3 Missense_Mutation p.P166L 0.34 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 1 207195197 207195197 C T C1orf116 3'UTR 0.62 TCGA-EE-A3JI-06 1 207644818 207644818 G A CR2 Nonsense_Mutation p.W515* 0.58 TCGA-EE-A3JI-06 1 207697024 207697024 C T CR1 Missense_Mutation p.H186Y 0.28 tolerated(1) benign(0.068) TCGA-EE-A3JI-06 1 207737254 207737254 G A CR1 Missense_Mutation p.R1211K 0.46 tolerated(0.95) benign(0.019) TCGA-EE-A3JI-06 1 207787770 207787770 T C CR1 Silent p.S2199S 0.07 TCGA-EE-A3JI-06 1 215368394 215368394 G A KCNK2 Missense_Mutation p.G308R 0.36 deleterious(0) probably_damaging(0.981) TCGA-EE-A3JI-06 1 21551913 21551913 C T ECE1 Missense_Mutation p.G624R 0.23 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 1 215953204 215953204 C T USH2A Silent p.R3640R 0.28 TCGA-EE-A3JI-06 1 224804897 224804897 G - CNIH3 Frame_Shift_Del p.F8Sfs*21 0.28 TCGA-EE-A3JI-06 1 225692710 225692710 G A ENAH Silent p.S528S 0.48 TCGA-EE-A3JI-06 1 226030159 226030159 G A EPHX1 Missense_Mutation p.D342N 0.29 deleterious(0.02) possibly_damaging(0.558) TCGA-EE-A3JI-06 1 227947039 227947039 C T SNAP47 Missense_Mutation p.R326C 0.31 deleterious(0) probably_damaging(0.972) TCGA-EE-A3JI-06 1 228447306 228447306 G A OBSCN Missense_Mutation p.E1656K 0.27 benign(0.08) TCGA-EE-A3JI-06 1 22927895 22927895 G A EPHA8 Missense_Mutation p.M944I 0.25 deleterious(0.01) benign(0.272) TCGA-EE-A3JI-06 1 22987384 22987384 C T C1QB Silent p.V89V 0.54 TCGA-EE-A3JI-06 1 230807279 230807279 T A COG2 Missense_Mutation p.F264L 0.36 tolerated(0.32) benign(0.001) TCGA-EE-A3JI-06 1 231339757 231339757 G T TRIM67 Missense_Mutation p.R560L 0.60 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 1 233105685 233105686 GT - NTPCR Frame_Shift_Del p.C110Rfs*4 0.28 TCGA-EE-A3JI-06 1 233394591 233394591 C T PCNXL2 Silent p.G339G 0.37 TCGA-EE-A3JI-06 1 23405551 23405551 C G KDM1A Missense_Mutation p.L646V 0.22 tolerated(0.18) possibly_damaging(0.64) TCGA-EE-A3JI-06 1 235335940 235335940 C T ARID4B Silent p.E1268E 0.62 TCGA-EE-A3JI-06 1 237580362 237580362 G A RYR2 Missense_Mutation p.E263K 0.25 probably_damaging(0.998) TCGA-EE-A3JI-06 1 238090459 238090459 G A RP11-193H5.1 RNA 0.52 TCGA-EE-A3JI-06 1 245006587 245006588 TT - COX20 3'UTR 0.40 TCGA-EE-A3JI-06 1 2458006 2458006 G A PANK4 Silent p.S7S 0.24 TCGA-EE-A3JI-06 1 245848919 245848919 G A KIF26B Silent p.K878K 0.47 TCGA-EE-A3JI-06 1 247614683 247614683 G A OR2B11 Missense_Mutation p.T201I 0.40 tolerated(0.22) benign(0.033) TCGA-EE-A3JI-06 1 247694932 247694932 C T OR2C3 Silent p.R294R 0.37 TCGA-EE-A3JI-06 1 247769025 247769025 C T OR2G3 Silent p.I46I 0.34 TCGA-EE-A3JI-06 1 247835468 247835468 C T OR13G1 Silent p.R292R 0.29 TCGA-EE-A3JI-06 1 247836116 247836116 C T OR13G1 Silent p.P76P 0.37 TCGA-EE-A3JI-06 1 247978181 247978181 G A OR14A16 Missense_Mutation p.P284L 0.43 deleterious(0) possibly_damaging(0.788) TCGA-EE-A3JI-06 1 248402931 248402931 G A OR2M4 Missense_Mutation p.R234H 0.45 tolerated(0.1) benign(0.036) TCGA-EE-A3JI-06 1 248551095 248551095 C T OR2T6 Silent p.L62L 0.28 TCGA-EE-A3JI-06 1 248570315 248570315 C T OR2T1 Silent p.Y340Y 0.54 TCGA-EE-A3JI-06 1 248616437 248616437 C T OR2T2 Silent p.F113F 0.17 TCGA-EE-A3JI-06 1 248616440 248616440 C T OR2T2 Silent p.F114F 0.17 TCGA-EE-A3JI-06 1 2537724 2537724 C T MMEL1 Nonsense_Mutation p.W238* 0.62 TCGA-EE-A3JI-06 1 26383786 26383786 C T TRIM63 Missense_Mutation p.G296E 0.24 tolerated(1) benign(0.004) TCGA-EE-A3JI-06 1 26620781 26620781 G T UBXN11 Silent p.P158P 0.53 TCGA-EE-A3JI-06 1 26620782 26620782 G A UBXN11 Missense_Mutation p.P158L 0.53 tolerated(0.11) possibly_damaging(0.703) TCGA-EE-A3JI-06 1 26877926 26877926 C T RPS6KA1 Silent p.L125L 0.22 TCGA-EE-A3JI-06 1 27480641 27480641 G A SLC9A1 Missense_Mutation p.T62I 0.29 tolerated(0.16) benign(0.076) TCGA-EE-A3JI-06 1 2938722 2938722 G A ACTRT2 Missense_Mutation p.D158N 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-EE-A3JI-06 1 31211796 31211796 C T LAPTM5 Missense_Mutation p.M167I 0.48 tolerated(0.52) benign(0.134) TCGA-EE-A3JI-06 1 31423046 31423046 C A PUM1 Missense_Mutation p.L928F 0.20 deleterious(0.01) probably_damaging(0.916) TCGA-EE-A3JI-06 1 31762188 31762188 C T SNRNP40 Silent p.K148K 0.61 TCGA-EE-A3JI-06 1 32745809 32745809 C T LCK Missense_Mutation p.P442L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 1 34554741 34554741 C T CSMD2 Missense_Mutation p.G41R 0.22 deleterious(0.01) probably_damaging(1) TCGA-EE-A3JI-06 1 35452956 35452956 C T ZMYM6 Missense_Mutation p.G1243R 0.19 tolerated_low_confidence(0.12) benign(0.004) TCGA-EE-A3JI-06 1 35972235 35972236 AG - KIAA0319L Frame_Shift_Del p.L215Dfs*38 0.18 TCGA-EE-A3JI-06 1 36752382 36752382 C T THRAP3 Missense_Mutation p.S184F 0.23 deleterious(0) unknown(0) TCGA-EE-A3JI-06 1 36859378 36859378 G A LSM10 Missense_Mutation p.P118L 0.19 tolerated_low_confidence(0.11) benign(0.002) TCGA-EE-A3JI-06 1 39340268 39340268 C T GJA9 Silent p.T501T 0.72 TCGA-EE-A3JI-06 1 39798475 39798475 C T MACF1 Intron 0.41 TCGA-EE-A3JI-06 1 39826491 39826491 C T MACF1 Missense_Mutation p.L2029F 0.17 possibly_damaging(0.86) TCGA-EE-A3JI-06 1 43396734 43396734 G A SLC2A1 Silent p.F86F 0.22 TCGA-EE-A3JI-06 1 43637828 43637828 G A EBNA1BP2 Intron 0.26 TCGA-EE-A3JI-06 1 45288156 45288156 G A PTCH2 Silent p.P1181P 0.61 TCGA-EE-A3JI-06 1 46685580 46685580 C T LURAP1 Silent p.T136T 0.20 TCGA-EE-A3JI-06 1 47583633 47583633 A T CYP4Z1 3'UTR 0.58 TCGA-EE-A3JI-06 1 52231614 52231614 A G OSBPL9 Missense_Mutation p.E310G 0.25 deleterious(0.01) benign(0.433) TCGA-EE-A3JI-06 1 53245583 53245583 G A ZYG11B Missense_Mutation p.R337Q 0.60 deleterious(0) possibly_damaging(0.662) TCGA-EE-A3JI-06 1 53245584 53245584 G A ZYG11B Silent p.R337R 0.61 TCGA-EE-A3JI-06 1 55151984 55151984 G A MROH7 Silent p.V858V 0.24 TCGA-EE-A3JI-06 1 57417739 57417739 C T C8B Silent p.V216V 0.62 TCGA-EE-A3JI-06 1 57417841 57417841 G A C8B Silent p.F182F 0.62 TCGA-EE-A3JI-06 1 57476829 57476829 C A DAB1 Nonsense_Mutation p.E521* 0.53 TCGA-EE-A3JI-06 1 6194852 6194852 C T CHD5 Missense_Mutation p.V980I 0.62 tolerated(0.14) possibly_damaging(0.836) TCGA-EE-A3JI-06 1 66102239 66102239 C T LEPR Silent p.F1013F 0.24 TCGA-EE-A3JI-06 1 6648404 6648405 AG - ZBTB48 Frame_Shift_Del p.Q528Pfs*4 0.27 TCGA-EE-A3JI-06 1 74492517 74492517 G A LRRIQ3 Missense_Mutation p.P619S 0.61 deleterious(0.05) possibly_damaging(0.541) TCGA-EE-A3JI-06 1 74506959 74506959 A G LRRIQ3 Silent p.V552V 0.20 TCGA-EE-A3JI-06 1 75038628 75038628 C T C1orf173 Silent p.L922L 0.22 TCGA-EE-A3JI-06 1 76877768 76877768 G A ST6GALNAC3 Missense_Mutation p.E97K 0.25 possibly_damaging(0.577) TCGA-EE-A3JI-06 1 78180377 78180377 G A USP33 Nonsense_Mutation p.R744* 0.65 TCGA-EE-A3JI-06 1 89329731 89329731 G A GTF2B Missense_Mutation p.P64L 0.22 deleterious(0.01) possibly_damaging(0.604) TCGA-EE-A3JI-06 1 89329732 89329732 G A GTF2B Missense_Mutation p.P64S 0.22 deleterious(0.01) possibly_damaging(0.721) TCGA-EE-A3JI-06 1 909270 909270 G A PLEKHN1 Missense_Mutation p.V498M 0.25 tolerated(0.07) benign(0.106) TCGA-EE-A3JI-06 1 94342789 94342790 CA - DNTTIP2 Frame_Shift_Del p.V234Efs*20 0.16 TCGA-EE-A3JI-06 1 94467406 94467406 G A ABCA4 Intron 0.20 TCGA-EE-A3JI-06 1 94639359 94639359 C T ARHGAP29 3'UTR 0.24 TCGA-EE-A3JI-06 1 94643672 94643672 C T ARHGAP29 Silent p.V844V 0.61 TCGA-EE-A3JI-06 1 95290162 95290162 T C SLC44A3 Silent p.P83P 0.64 TCGA-EE-A3JI-06 1 9784410 9784410 T G PIK3CD Missense_Mutation p.F932C 0.32 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 1 9791186 9791186 G A CLSTN1 Intron 0.28 TCGA-EE-A3JI-06 1 99380380 99380380 G A LPPR5 Nonsense_Mutation p.R299* 0.63 TCGA-EE-A3JI-06 20 13830116 13830116 C T SEL1L2 3'UTR 0.27 TCGA-EE-A3JI-06 20 18491677 18491677 T A SEC23B Nonsense_Mutation p.C66* 0.44 TCGA-EE-A3JI-06 20 18541292 18541292 C T SEC23B Intron 0.38 TCGA-EE-A3JI-06 20 1961496 1961496 C T PDYN Missense_Mutation p.E80K 0.43 tolerated(0.24) benign(0.021) TCGA-EE-A3JI-06 20 20616169 20616169 G A RALGAPA2 Missense_Mutation p.R300C 0.35 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JI-06 20 23066219 23066219 G A CD93 Missense_Mutation p.P204L 0.43 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 20 25457264 25457264 G A NINL Missense_Mutation p.T888M 0.11 tolerated(0.27) benign(0.051) TCGA-EE-A3JI-06 20 25471998 25471998 G A NINL Silent p.L492L 0.42 TCGA-EE-A3JI-06 20 25471999 25471999 G C NINL Silent p.T491T 0.42 TCGA-EE-A3JI-06 20 3129526 3129526 G A FASTKD5 Missense_Mutation p.S64F 0.54 tolerated(0.16) benign(0.024) TCGA-EE-A3JI-06 20 31876544 31876544 C T BPIFB1 Intron 0.38 TCGA-EE-A3JI-06 20 3240668 3240668 T C C20orf194 Silent p.E960E 0.25 TCGA-EE-A3JI-06 20 33330872 33330872 G A NCOA6 Missense_Mutation p.P1063L 0.41 benign(0.027) TCGA-EE-A3JI-06 20 35740805 35740805 C T MROH8 Nonsense_Mutation p.W939* 0.53 TCGA-EE-A3JI-06 20 36625327 36625327 C T TTI1 Missense_Mutation p.G941D 0.36 deleterious(0.02) possibly_damaging(0.903) TCGA-EE-A3JI-06 20 36625328 36625328 C T TTI1 Missense_Mutation p.G941S 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JI-06 20 36640161 36640161 G A TTI1 Silent p.S686S 0.36 TCGA-EE-A3JI-06 20 42169418 42169418 C A L3MBTL1 Missense_Mutation p.T764K 0.42 deleterious(0.02) probably_damaging(0.974) TCGA-EE-A3JI-06 20 42694723 42694723 G A TOX2 Missense_Mutation p.M444I 0.42 tolerated_low_confidence(0.42) benign(0.02) TCGA-EE-A3JI-06 20 43940861 43940861 G A RBPJL Missense_Mutation p.E149K 0.41 tolerated(0.64) benign(0.217) TCGA-EE-A3JI-06 20 44108568 44108568 C T WFDC2 Intron 0.39 TCGA-EE-A3JI-06 20 45850083 45850084 TC - ZMYND8 Frame_Shift_Del p.E1054Nfs*4 0.20 TCGA-EE-A3JI-06 20 46331304 46331304 G A SULF2 Missense_Mutation p.R176W 0.54 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JI-06 20 49218807 49218807 G A FAM65C Silent p.S483S 0.37 TCGA-EE-A3JI-06 20 50407577 50407577 G A SALL4 Missense_Mutation p.S482F 0.45 deleterious(0) benign(0.145) TCGA-EE-A3JI-06 20 5081432 5081432 G A TMEM230 3'UTR 0.39 TCGA-EE-A3JI-06 20 55111278 55111278 G A FAM209B Silent p.K100K 0.15 TCGA-EE-A3JI-06 20 55913399 55913399 C T SPO11 Missense_Mutation p.P271L 0.45 deleterious(0) probably_damaging(0.915) TCGA-EE-A3JI-06 20 56140097 56140097 T A PCK1 Silent p.G440G 0.10 TCGA-EE-A3JI-06 20 57768340 57768340 G A ZNF831 Missense_Mutation p.E756K 0.20 tolerated(0.09) benign(0.052) TCGA-EE-A3JI-06 20 60854354 60854354 G A OSBPL2 Silent p.V211V 0.46 TCGA-EE-A3JI-06 20 62187942 62187942 T C C20orf195 Missense_Mutation p.L309P 0.42 tolerated(0.33) benign(0.001) TCGA-EE-A3JI-06 20 62648073 62648073 C G PRPF6 Intron 0.43 TCGA-EE-A3JI-06 21 10998223 10998223 C T TPTE RNA 0.19 TCGA-EE-A3JI-06 21 11039340 11039340 C T BAGE2 RNA 0.07 TCGA-EE-A3JI-06 21 17191139 17191139 G A USP25 Missense_Mutation p.E352K 0.42 tolerated(0.05) benign(0.013) TCGA-EE-A3JI-06 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.54 deleterious_low_confidence(0.03) unknown(0) TCGA-EE-A3JI-06 21 31027130 31027130 C T GRIK1 Silent p.L260L 0.54 TCGA-EE-A3JI-06 21 32624215 32624215 G A TIAM1 Silent p.S418S 0.52 TCGA-EE-A3JI-06 21 34022609 34022609 G A SYNJ1 Silent p.I1013I 0.23 TCGA-EE-A3JI-06 21 34668668 34668668 G T IL10RB 3'UTR 0.26 TCGA-EE-A3JI-06 21 34960667 34960667 G A DONSON Missense_Mutation p.P94L 0.59 tolerated(0.17) benign(0.002) TCGA-EE-A3JI-06 21 35288020 35288020 C T ATP5O Intron 0.26 TCGA-EE-A3JI-06 21 35288021 35288021 C T ATP5O Intron 0.26 TCGA-EE-A3JI-06 21 36079603 36079603 G A CLIC6 Missense_Mutation p.G467E 0.53 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 21 42080479 42080479 G A DSCAM Missense_Mutation p.P88S 0.50 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JI-06 21 42852511 42852511 T C TMPRSS2 Missense_Mutation p.N192S 0.36 tolerated(0.18) benign(0.068) TCGA-EE-A3JI-06 21 45671560 45671560 C T DNMT3L Missense_Mutation p.D239N 0.57 deleterious(0.03) possibly_damaging(0.756) TCGA-EE-A3JI-06 21 46000351 46000351 G A KRTAP10-5 Silent p.P35P 0.36 TCGA-EE-A3JI-06 21 46685477 46685477 G A POFUT2 Missense_Mutation p.P404S 0.31 deleterious(0.03) possibly_damaging(0.462) TCGA-EE-A3JI-06 21 47693322 47693322 G A MCM3AP Missense_Mutation p.R726C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 21 47985697 47985697 C T DIP2A Silent p.D1412D 0.31 TCGA-EE-A3JI-06 22 19373209 19373209 C T HIRA Silent p.E388E 0.46 TCGA-EE-A3JI-06 22 20229598 20229598 G A RTN4R Missense_Mutation p.A353V 0.34 deleterious(0.02) benign(0.15) TCGA-EE-A3JI-06 22 20819536 20819536 G A KLHL22 Missense_Mutation p.L241F 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-EE-A3JI-06 22 21801075 21801075 G A HIC2 3'UTR 0.56 TCGA-EE-A3JI-06 22 24036534 24036534 G A RGL4 Missense_Mutation p.E305K 0.60 deleterious(0.01) probably_damaging(0.934) TCGA-EE-A3JI-06 22 24145601 24145601 A G SMARCB1 Missense_Mutation p.N207S 0.25 deleterious(0.03) benign(0.211) TCGA-EE-A3JI-06 22 24896233 24896233 C T UPB1 Missense_Mutation p.P88L 0.33 deleterious(0.01) benign(0.065) TCGA-EE-A3JI-06 22 26286818 26286818 C T MYO18B Silent p.A1470A 0.26 TCGA-EE-A3JI-06 22 27026359 27026359 G A CRYBA4 Missense_Mutation p.D167N 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JI-06 22 31531651 31531651 G A PLA2G3 3'UTR 0.68 TCGA-EE-A3JI-06 22 32756874 32756874 G A RFPL3 3'UTR 0.70 TCGA-EE-A3JI-06 22 33673082 33673082 C T LARGE Nonsense_Mutation p.W679* 0.26 TCGA-EE-A3JI-06 22 37398061 37398061 C T TEX33 Silent p.S102S 0.48 TCGA-EE-A3JI-06 22 37425444 37425444 C T MPST Silent p.A281A 0.53 TCGA-EE-A3JI-06 22 37771076 37771076 C T ELFN2 Missense_Mutation p.D167N 0.60 tolerated(0.08) benign(0.192) TCGA-EE-A3JI-06 22 37964254 37964254 C T CDC42EP1 Silent p.D201D 0.56 TCGA-EE-A3JI-06 22 38155261 38155261 A G TRIOBP Missense_Mutation p.Y2105C 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JI-06 22 39067277 39067277 C T CBY1 Intron 0.24 TCGA-EE-A3JI-06 22 41265055 41265055 G C XPNPEP3 Missense_Mutation p.R39S 0.54 tolerated(0.2) benign(0.004) TCGA-EE-A3JI-06 22 43623415 43623415 C T SCUBE1 Missense_Mutation p.G391E 0.71 deleterious(0) possibly_damaging(0.864) TCGA-EE-A3JI-06 22 45279034 45279034 C T PHF21B Missense_Mutation p.G510R 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.748) TCGA-EE-A3JI-06 22 45765931 45765931 C T SMC1B Missense_Mutation p.D775N 0.68 tolerated(0.37) benign(0.003) TCGA-EE-A3JI-06 22 45946486 45946486 C T FBLN1 Missense_Mutation p.S563F 0.25 deleterious(0.03) probably_damaging(0.951) TCGA-EE-A3JI-06 22 46805046 46805046 G A CELSR1 Silent p.P1691P 0.25 TCGA-EE-A3JI-06 22 47064588 47064588 C T GRAMD4 Silent p.N311N 0.23 TCGA-EE-A3JI-06 22 47274573 47274573 C T TBC1D22A Missense_Mutation p.S221F 0.60 deleterious(0) possibly_damaging(0.873) TCGA-EE-A3JI-06 22 47274574 47274574 C T TBC1D22A Silent p.S221S 0.60 TCGA-EE-A3JI-06 22 50320970 50320970 C T CRELD2 3'UTR 0.20 TCGA-EE-A3JI-06 2 10104169 10104169 C T GRHL1 Nonsense_Mutation p.R301* 0.33 TCGA-EE-A3JI-06 2 10198994 10198994 C T CYS1 Missense_Mutation p.E155K 0.43 deleterious(0) possibly_damaging(0.486) TCGA-EE-A3JI-06 2 103324997 103324997 T A SLC9A2 3'UTR 0.39 TCGA-EE-A3JI-06 2 107032347 107032347 C T RGPD3 Missense_Mutation p.E1675K 0.43 deleterious_low_confidence(0.05) benign(0.001) TCGA-EE-A3JI-06 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.38 probably_damaging(1) TCGA-EE-A3JI-06 2 108455394 108455394 G A RGPD4 Missense_Mutation p.G127R 0.42 deleterious(0) probably_damaging(0.979) TCGA-EE-A3JI-06 2 108627321 108627321 C T SLC5A7 3'UTR 0.30 TCGA-EE-A3JI-06 2 108868931 108868931 C T SULT1C3 Missense_Mutation p.P95S 0.36 deleterious(0.02) possibly_damaging(0.451) TCGA-EE-A3JI-06 2 108910146 108910146 G A SULT1C2 Missense_Mutation p.G8E 0.43 tolerated(0.36) benign(0.006) TCGA-EE-A3JI-06 2 109088412 109088413 AG - GCC2 Frame_Shift_Del p.N877Sfs*6 0.12 TCGA-EE-A3JI-06 2 10927439 10927439 G A PDIA6 Silent p.S375S 0.39 TCGA-EE-A3JI-06 2 109367830 109367830 C T RANBP2 Missense_Mutation p.H462Y 0.33 tolerated(0.05) benign(0.064) TCGA-EE-A3JI-06 2 109381664 109381664 G A RANBP2 Missense_Mutation p.E1557K 0.42 tolerated(0.26) possibly_damaging(0.831) TCGA-EE-A3JI-06 2 11053059 11053059 G A KCNF1 Nonsense_Mutation p.W169* 0.51 TCGA-EE-A3JI-06 2 112687117 112687117 G A MERTK Missense_Mutation p.S161N 0.46 deleterious(0.02) probably_damaging(0.99) TCGA-EE-A3JI-06 2 113416433 113416433 C T SLC20A1 Silent p.P270P 0.44 TCGA-EE-A3JI-06 2 119735494 119735494 G A MARCO Missense_Mutation p.G250E 0.29 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 2 125671801 125671801 C T CNTNAP5 Missense_Mutation p.S1286F 0.38 deleterious(0.03) probably_damaging(0.933) TCGA-EE-A3JI-06 2 128477219 128477219 G A WDR33 Nonsense_Mutation p.Q794* 0.38 TCGA-EE-A3JI-06 2 131519695 131519695 C T AMER3 Missense_Mutation p.S17F 0.26 deleterious(0) possibly_damaging(0.906) TCGA-EE-A3JI-06 2 133539964 133539964 C T NCKAP5 Missense_Mutation p.E1474K 0.51 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 2 135659463 135659463 G A ACMSD 3'UTR 0.39 TCGA-EE-A3JI-06 2 135743399 135743399 C T MAP3K19 Missense_Mutation p.G1015S 0.34 tolerated(0.08) benign(0.069) TCGA-EE-A3JI-06 2 135745329 135745329 C T MAP3K19 Silent p.K371K 0.41 TCGA-EE-A3JI-06 2 136570124 136570124 C T LCT Missense_Mutation p.D704N 0.48 tolerated(0.31) benign(0.007) TCGA-EE-A3JI-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.41 tolerated(0.95) unknown(0) TCGA-EE-A3JI-06 2 143798171 143798171 A C KYNU Missense_Mutation p.T406P 0.45 tolerated(0.19) benign(0.153) TCGA-EE-A3JI-06 2 144244968 144244968 G A ARHGAP15 Missense_Mutation p.D244N 0.48 tolerated(0.14) probably_damaging(0.964) TCGA-EE-A3JI-06 2 152322470 152322470 C T RIF1 Nonsense_Mutation p.Q2146* 0.43 TCGA-EE-A3JI-06 2 155307003 155307003 G A GALNT13 Silent p.Q537Q 0.49 TCGA-EE-A3JI-06 2 160086657 160086657 C T TANC1 Missense_Mutation p.P1574S 0.53 tolerated_low_confidence(0.12) benign(0.002) TCGA-EE-A3JI-06 2 160086658 160086658 C T TANC1 Missense_Mutation p.P1574L 0.54 tolerated_low_confidence(0.1) benign(0.001) TCGA-EE-A3JI-06 2 160994167 160994168 CA - ITGB6 Frame_Shift_Del p.A480Lfs*11 0.16 TCGA-EE-A3JI-06 2 163302799 163302799 G A KCNH7 Missense_Mutation p.S428F 0.44 deleterious(0.04) probably_damaging(0.984) TCGA-EE-A3JI-06 2 166012313 166012313 G A SCN3A Nonsense_Mutation p.R378* 0.43 TCGA-EE-A3JI-06 2 166626759 166626759 T A GALNT3 Missense_Mutation p.N151I 0.41 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 2 172582223 172582223 G A DYNC1I2 Missense_Mutation p.A203T 0.23 tolerated(0.53) benign(0.014) TCGA-EE-A3JI-06 2 172644339 172644339 G A SLC25A12 Silent p.L568L 0.34 TCGA-EE-A3JI-06 2 175431766 175431766 G A WIPF1 Intron 0.26 TCGA-EE-A3JI-06 2 17898033 17898033 C G SMC6 Missense_Mutation p.D441H 0.18 tolerated(0.54) benign(0.005) TCGA-EE-A3JI-06 2 179395360 179395360 C T TTN Missense_Mutation p.E35328K 0.51 TCGA-EE-A3JI-06 2 179439960 179439960 C T TTN Silent p.L23633L 0.26 TCGA-EE-A3JI-06 2 179463960 179463960 C T TTN Missense_Mutation p.E18854K 0.43 TCGA-EE-A3JI-06 2 179477040 179477040 C T TTN Missense_Mutation p.E16738K 0.36 TCGA-EE-A3JI-06 2 179569693 179569693 C T TTN Missense_Mutation p.E9869K 0.44 TCGA-EE-A3JI-06 2 179579780 179579780 C T TTN Silent p.G8711G 0.40 TCGA-EE-A3JI-06 2 179583579 179583579 C T TTN Silent p.R8116R 0.45 TCGA-EE-A3JI-06 2 179584535 179584535 G A TTN Missense_Mutation p.P7895L 0.37 TCGA-EE-A3JI-06 2 179592888 179592888 C T TTN Missense_Mutation p.V6555M 0.46 TCGA-EE-A3JI-06 2 179596191 179596191 C T TTN Missense_Mutation p.D5768N 0.41 TCGA-EE-A3JI-06 2 179615354 179615354 C T TTN Intron 0.33 TCGA-EE-A3JI-06 2 179615801 179615801 G A TTN Intron 0.38 TCGA-EE-A3JI-06 2 179622629 179622629 C T TTN Missense_Mutation p.E3440K 0.32 TCGA-EE-A3JI-06 2 179632510 179632510 G A TTN Silent p.I3149I 0.45 TCGA-EE-A3JI-06 2 179639138 179639138 C T TTN Missense_Mutation p.E2285K 0.31 TCGA-EE-A3JI-06 2 179654825 179654825 C T TTN Silent p.R606R 0.43 TCGA-EE-A3JI-06 2 179656878 179656878 G A TTN Missense_Mutation p.S528F 0.37 TCGA-EE-A3JI-06 2 182396419 182396419 C T ITGA4 Silent p.F900F 0.42 TCGA-EE-A3JI-06 2 186673030 186673030 G A FSIP2 Missense_Mutation p.E6422K 0.33 possibly_damaging(0.817) TCGA-EE-A3JI-06 2 196659101 196659101 C T DNAH7 Silent p.P3559P 0.45 TCGA-EE-A3JI-06 2 197183563 197183563 C A HECW2 Missense_Mutation p.C684F 0.43 tolerated_low_confidence(0.42) benign(0.087) TCGA-EE-A3JI-06 2 197740512 197740513 TC - PGAP1 Frame_Shift_Del p.R463Ifs*43 0.16 TCGA-EE-A3JI-06 2 198949641 198949641 C T PLCL1 Missense_Mutation p.S467F 0.22 deleterious(0.04) possibly_damaging(0.56) TCGA-EE-A3JI-06 2 201683014 201683015 AG - BZW1 Frame_Shift_Del p.E272Afs*15 0.13 TCGA-EE-A3JI-06 2 202137381 202137382 AG - CASP8 Frame_Shift_Del p.E204Dfs*34 0.11 TCGA-EE-A3JI-06 2 203620270 203620270 C T FAM117B Missense_Mutation p.P324S 0.35 tolerated(0.48) benign(0.28) TCGA-EE-A3JI-06 2 207173675 207173675 G A ZDBF2 Missense_Mutation p.E1475K 0.33 deleterious(0.01) benign(0.292) TCGA-EE-A3JI-06 2 207173679 207173679 C G ZDBF2 Missense_Mutation p.A1476G 0.33 deleterious(0.04) benign(0.364) TCGA-EE-A3JI-06 2 207631377 207631377 A G FASTKD2 5'UTR 0.16 TCGA-EE-A3JI-06 2 208693168 208693168 G A PLEKHM3 Missense_Mutation p.P721S 0.38 tolerated(0.21) possibly_damaging(0.566) TCGA-EE-A3JI-06 2 209007373 209007373 C T CRYGB Missense_Mutation p.D173N 0.43 deleterious(0.03) benign(0.031) TCGA-EE-A3JI-06 2 209116179 209116179 G A IDH1 Missense_Mutation p.P33S 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EE-A3JI-06 2 209141445 209141445 G A PIKFYVE Missense_Mutation p.R111K 0.48 tolerated(0.21) benign(0.276) TCGA-EE-A3JI-06 2 211302499 211302499 G A LANCL1 Missense_Mutation p.P263L 0.43 deleterious(0.02) probably_damaging(0.966) TCGA-EE-A3JI-06 2 215674232 215674232 C A BARD1 Missense_Mutation p.R21L 0.54 tolerated(0.67) benign(0.024) TCGA-EE-A3JI-06 2 219507187 219507189 TGC - ZNF142 In_Frame_Del p.Q1350del 0.33 TCGA-EE-A3JI-06 2 219747107 219747107 G A WNT10A Missense_Mutation p.R113H 0.17 tolerated(0.34) probably_damaging(0.938) TCGA-EE-A3JI-06 2 220427190 220427190 C G OBSL1 Missense_Mutation p.E963Q 0.15 tolerated(0.65) benign(0.06) TCGA-EE-A3JI-06 2 225266165 225266165 A T FAM124B Nonsense_Mutation p.C107* 0.45 TCGA-EE-A3JI-06 2 228846528 228846528 C T SPHKAP Missense_Mutation p.D1670N 0.48 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 2 228884600 228884600 G A SPHKAP Missense_Mutation p.H324Y 0.49 tolerated(1) benign(0) TCGA-EE-A3JI-06 2 230411682 230411683 - A DNER Frame_Shift_Ins p.C325Lfs*15 0.18 TCGA-EE-A3JI-06 2 231314322 231314323 AG - SP100 Frame_Shift_Del p.E212Tfs*12 0.10 TCGA-EE-A3JI-06 2 232010954 232010954 G A PSMD1 Missense_Mutation p.E667K 0.38 deleterious(0) possibly_damaging(0.758) TCGA-EE-A3JI-06 2 232326309 232326310 CT - NCL Frame_Shift_Del p.E185Gfs*2 0.11 TCGA-EE-A3JI-06 2 237028857 237028857 C T AGAP1 Silent p.I712I 0.55 TCGA-EE-A3JI-06 2 238274538 238274538 G A COL6A3 Missense_Mutation p.R1881C 0.39 possibly_damaging(0.786) TCGA-EE-A3JI-06 2 238303650 238303650 G A COL6A3 Missense_Mutation p.R97C 0.45 probably_damaging(0.959) TCGA-EE-A3JI-06 2 238475779 238475779 C T PRLH Silent p.F75F 0.49 TCGA-EE-A3JI-06 2 239140630 239140630 G A AC016757.3 5'Flank 0.37 TCGA-EE-A3JI-06 2 239161916 239161916 C T PER2 Silent p.G916G 0.43 TCGA-EE-A3JI-06 2 241813462 241813462 C T AGXT Silent p.S221S 0.47 TCGA-EE-A3JI-06 2 242373707 242373707 C T FARP2 Silent p.F334F 0.54 TCGA-EE-A3JI-06 2 242695213 242695213 C G D2HGDH Intron 0.53 TCGA-EE-A3JI-06 2 24469741 24469742 TC - ITSN2 Frame_Shift_Del p.K1104Rfs*9 0.15 TCGA-EE-A3JI-06 2 26607985 26607985 G A EPT1 Missense_Mutation p.G297E 0.80 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JI-06 2 26676319 26676319 G A DRC1 Silent p.K607K 0.28 TCGA-EE-A3JI-06 2 26676320 26676320 G A DRC1 Missense_Mutation p.E608K 0.30 tolerated(0.39) benign(0.062) TCGA-EE-A3JI-06 2 26698339 26698339 G A OTOF Missense_Mutation p.P1005L 0.38 deleterious(0) probably_damaging(0.955) TCGA-EE-A3JI-06 2 27427751 27427751 G A SLC5A6 Silent p.F261F 0.34 TCGA-EE-A3JI-06 2 27549689 27549689 G T GTF3C2 Silent p.I863I 0.46 TCGA-EE-A3JI-06 2 28113153 28113153 C T RBKS Silent p.V20V 0.45 TCGA-EE-A3JI-06 2 29543648 29543648 G A ALK Silent p.T505T 0.46 TCGA-EE-A3JI-06 2 32843005 32843005 C A BIRC6 3'UTR 0.54 TCGA-EE-A3JI-06 2 33745679 33745679 C T RASGRP3 Missense_Mutation p.T99I 0.45 tolerated(1) benign(0.103) TCGA-EE-A3JI-06 2 37032697 37032697 G A VIT Missense_Mutation p.E427K 0.29 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JI-06 2 37076662 37076662 G A STRN Silent p.F760F 0.39 TCGA-EE-A3JI-06 2 37284583 37284583 G A HEATR5B Silent p.F700F 0.33 TCGA-EE-A3JI-06 2 37334636 37334637 TC - EIF2AK2 Frame_Shift_Del p.D505Yfs*3 0.21 TCGA-EE-A3JI-06 2 39088946 39088946 G A DHX57 Silent p.V202V 0.36 TCGA-EE-A3JI-06 2 42488319 42488319 C T EML4 Missense_Mutation p.H133Y 0.45 tolerated(0.08) possibly_damaging(0.589) TCGA-EE-A3JI-06 2 42991193 42991193 G A OXER1 Missense_Mutation p.H43Y 0.45 deleterious_low_confidence(0.01) benign(0.031) TCGA-EE-A3JI-06 2 43927366 43927366 C T PLEKHH2 Silent p.L423L 0.35 TCGA-EE-A3JI-06 2 43927367 43927367 T A PLEKHH2 Missense_Mutation p.S424T 0.35 tolerated(0.47) benign(0) TCGA-EE-A3JI-06 2 48915030 48915030 G A LHCGR Missense_Mutation p.L636F 0.20 deleterious(0.01) possibly_damaging(0.536) TCGA-EE-A3JI-06 2 51255178 51255178 G A NRXN1 Silent p.F78F 0.44 TCGA-EE-A3JI-06 2 54101512 54101512 C T PSME4 Nonsense_Mutation p.W1688* 0.42 TCGA-EE-A3JI-06 2 54856098 54856098 C T SPTBN1 Silent p.I609I 0.45 TCGA-EE-A3JI-06 2 60688274 60688274 G A BCL11A Silent p.A591A 0.40 TCGA-EE-A3JI-06 2 60688275 60688275 G A BCL11A Missense_Mutation p.A591V 0.40 tolerated(0.41) benign(0.235) TCGA-EE-A3JI-06 2 67631024 67631024 C T ETAA1 Missense_Mutation p.P404S 0.43 tolerated(0.25) benign(0.336) TCGA-EE-A3JI-06 2 69172465 69172465 T A GKN2 3'UTR 0.44 TCGA-EE-A3JI-06 2 6991588 6991588 G A CMPK2 Missense_Mutation p.R407C 0.38 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 2 70919548 70919548 G A ADD2 Missense_Mutation p.P231L 0.13 tolerated(0.05) possibly_damaging(0.887) TCGA-EE-A3JI-06 2 72406574 72406574 G A EXOC6B Missense_Mutation p.R776C 0.46 deleterious(0) possibly_damaging(0.791) TCGA-EE-A3JI-06 2 73452993 73452994 AG - SMYD5 Frame_Shift_Del p.E393Rfs*21 0.10 TCGA-EE-A3JI-06 2 74077595 74077595 C T STAMBP Silent p.F320F 0.41 TCGA-EE-A3JI-06 2 74902126 74902126 C T SEMA4F Silent p.V371V 0.40 TCGA-EE-A3JI-06 2 85590219 85590219 G A ELMOD3 Splice_Site p.X44_splice 0.41 TCGA-EE-A3JI-06 2 86693821 86693821 C T KDM3A Missense_Mutation p.S445F 0.35 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-EE-A3JI-06 2 89082392 89082392 C T ANKRD36BP2 RNA 0.30 TCGA-EE-A3JI-06 2 95497788 95497788 C T ANKRD20A8P RNA 0.45 TCGA-EE-A3JI-06 2 95963179 95963179 C T KCNIP3 5'UTR 0.14 TCGA-EE-A3JI-06 2 97363851 97363851 G A FER1L5 RNA 0.33 TCGA-EE-A3JI-06 2 97519293 97519293 C T ANKRD39 Missense_Mutation p.E85K 0.42 tolerated(0.12) possibly_damaging(0.832) TCGA-EE-A3JI-06 2 99790457 99790458 TC - MITD1 Frame_Shift_Del p.R58Mfs*2 0.12 TCGA-EE-A3JI-06 3 102157429 102157429 G A ZPLD1 Missense_Mutation p.R49K 0.55 deleterious(0.01) probably_damaging(0.974) TCGA-EE-A3JI-06 3 10346764 10346764 C T SEC13 Missense_Mutation p.A221T 0.45 deleterious(0.01) possibly_damaging(0.887) TCGA-EE-A3JI-06 3 108475997 108475997 G A RETNLB Silent p.I12I 0.26 TCGA-EE-A3JI-06 3 108476006 108476006 G A RETNLB Silent p.L9L 0.25 TCGA-EE-A3JI-06 3 108822756 108822756 C T MORC1 Missense_Mutation p.E55K 0.21 deleterious(0.03) possibly_damaging(0.859) TCGA-EE-A3JI-06 3 109031453 109031453 C T DPPA2 Missense_Mutation p.M40I 0.45 tolerated(0.57) benign(0.002) TCGA-EE-A3JI-06 3 113377887 113377887 G A KIAA2018 Missense_Mutation p.S881L 0.27 benign(0.036) TCGA-EE-A3JI-06 3 113380144 113380144 G A KIAA2018 Missense_Mutation p.L129F 0.31 probably_damaging(0.999) TCGA-EE-A3JI-06 3 113673157 113673157 G A ZDHHC23 Missense_Mutation p.E258K 0.54 tolerated(0.74) benign(0.01) TCGA-EE-A3JI-06 3 11606375 11606375 G A VGLL4 Missense_Mutation p.P131S 0.42 tolerated(0.23) benign(0.068) TCGA-EE-A3JI-06 3 118948832 118948832 G A B4GALT4 Nonsense_Mutation p.Q39* 0.59 TCGA-EE-A3JI-06 3 119469924 119469924 C T MAATS1 Nonsense_Mutation p.Q762* 0.54 TCGA-EE-A3JI-06 3 119886732 119886732 G A GPR156 Missense_Mutation p.S531L 0.27 tolerated(0.2) benign(0.008) TCGA-EE-A3JI-06 3 119962576 119962576 G A GPR156 Silent p.V48V 0.56 TCGA-EE-A3JI-06 3 121659684 121659684 G A SLC15A2 Missense_Mutation p.E674K 0.51 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3JI-06 3 122044132 122044132 C T CSTA 5'UTR 0.43 TCGA-EE-A3JI-06 3 122422657 122422657 C T PARP14 Silent p.L1050L 0.40 TCGA-EE-A3JI-06 3 12447418 12447418 G A PPARG Silent p.E219E 0.37 TCGA-EE-A3JI-06 3 124567266 124567266 C T ITGB5 Silent p.E167E 0.23 TCGA-EE-A3JI-06 3 128580685 128580685 G A RP11-723O4.9 5'Flank 0.63 TCGA-EE-A3JI-06 3 128690270 128690270 C T KIAA1257 Missense_Mutation p.G343E 0.60 tolerated(0.96) benign(0.091) TCGA-EE-A3JI-06 3 128690271 128690271 C T KIAA1257 Missense_Mutation p.G343R 0.64 tolerated(0.7) benign(0.022) TCGA-EE-A3JI-06 3 130293331 130293331 G A COL6A6 Missense_Mutation p.R1170K 0.45 deleterious(0.04) possibly_damaging(0.889) TCGA-EE-A3JI-06 3 13613109 13613109 G A FBLN2 Silent p.E418E 0.31 TCGA-EE-A3JI-06 3 13613110 13613110 G A FBLN2 Missense_Mutation p.E419K 0.31 tolerated(0.13) benign(0.121) TCGA-EE-A3JI-06 3 136665000 136665000 T G NCK1 Missense_Mutation p.Y268D 0.05 tolerated(0.18) benign(0.008) TCGA-EE-A3JI-06 3 137790600 137790600 C T DZIP1L Silent p.R500R 0.64 TCGA-EE-A3JI-06 3 138738696 138738696 G A PRR23B 3'UTR 0.19 TCGA-EE-A3JI-06 3 139080127 139080131 TTCTG - COPB2 Frame_Shift_Del p.Q668Vfs*6 0.11 TCGA-EE-A3JI-06 3 140409855 140409855 G A TRIM42 Missense_Mutation p.E636K 0.25 tolerated(0.11) probably_damaging(0.993) TCGA-EE-A3JI-06 3 141162801 141162801 C T ZBTB38 Missense_Mutation p.T524I 0.45 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 3 141535834 141535834 G A GRK7 Missense_Mutation p.R535K 0.27 tolerated(0.18) benign(0.164) TCGA-EE-A3JI-06 3 142030475 142030475 G A XRN1 Nonsense_Mutation p.Q1667* 0.67 TCGA-EE-A3JI-06 3 14561673 14561673 C T GRIP2 RNA 0.61 TCGA-EE-A3JI-06 3 147106568 147106568 C T ZIC4 3'UTR 0.24 TCGA-EE-A3JI-06 3 148924065 148924065 G A CP Silent p.I366I 0.23 TCGA-EE-A3JI-06 3 150931122 150931122 C T P2RY14 Missense_Mutation p.G328E 0.45 tolerated(0.22) benign(0.003) TCGA-EE-A3JI-06 3 151012161 151012161 G A GPR87 Silent p.I291I 0.31 TCGA-EE-A3JI-06 3 15115943 15115943 G A ZFYVE20 Silent p.T567T 0.42 TCGA-EE-A3JI-06 3 151451863 151451863 C T AADACL2 Missense_Mutation p.L14F 0.65 tolerated(0.19) unknown(0) TCGA-EE-A3JI-06 3 154146613 154146613 A G GPR149 Silent p.S264S 0.57 TCGA-EE-A3JI-06 3 15452679 15452679 G A METTL6 Intron 0.44 TCGA-EE-A3JI-06 3 157818074 157818074 T A SHOX2 Missense_Mutation p.K218N 0.27 deleterious(0.02) probably_damaging(1) TCGA-EE-A3JI-06 3 164776765 164776765 G A SI Missense_Mutation p.P462S 0.42 deleterious(0.02) benign(0.018) TCGA-EE-A3JI-06 3 167254736 167254736 C T WDR49 Missense_Mutation p.E274K 0.55 tolerated(0.1) benign(0.07) TCGA-EE-A3JI-06 3 169550948 169550948 A G LRRIQ4 Missense_Mutation p.N503D 0.44 tolerated(0.2) benign(0.032) TCGA-EE-A3JI-06 3 170828642 170828642 C T TNIK Silent p.E715E 0.17 TCGA-EE-A3JI-06 3 179689405 179689405 C T PEX5L Missense_Mutation p.E24K 0.38 deleterious_low_confidence(0) benign(0) TCGA-EE-A3JI-06 3 183479380 183479380 G T YEATS2 Missense_Mutation p.G581V 0.54 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-EE-A3JI-06 3 183491520 183491520 C A YEATS2 Nonsense_Mutation p.S769* 0.20 TCGA-EE-A3JI-06 3 183700571 183700571 G A ABCC5 Silent p.S272S 0.21 TCGA-EE-A3JI-06 3 184689496 184689496 C T VPS8 Missense_Mutation p.L1126F 0.29 tolerated(0.18) benign(0.126) TCGA-EE-A3JI-06 3 186505137 186505138 CC - EIF4A2 Intron 0.19 TCGA-EE-A3JI-06 3 186953726 186953726 C T MASP1 Missense_Mutation p.E645K 0.68 tolerated(0.2) benign(0.049) TCGA-EE-A3JI-06 3 186953727 186953727 C T MASP1 Silent p.T644T 0.24 TCGA-EE-A3JI-06 3 186954120 186954120 C T MASP1 Silent p.K513K 0.50 TCGA-EE-A3JI-06 3 189038424 189038424 T C TPRG1 Missense_Mutation p.F215L 0.14 deleterious(0.02) benign(0.011) TCGA-EE-A3JI-06 3 189612277 189612277 G A TP63 Missense_Mutation p.E677K 0.51 deleterious_low_confidence(0) benign(0.192) TCGA-EE-A3JI-06 3 193374900 193374900 C T OPA1 Missense_Mutation p.S719F 0.20 tolerated(0.08) benign(0.009) TCGA-EE-A3JI-06 3 196198710 196198710 A G RNF168 Missense_Mutation p.F566L 0.15 deleterious(0.05) possibly_damaging(0.669) TCGA-EE-A3JI-06 3 196199271 196199271 G A RNF168 Silent p.L379L 0.28 TCGA-EE-A3JI-06 3 196199272 196199272 G A RNF168 Silent p.C378C 0.28 TCGA-EE-A3JI-06 3 196674137 196674138 AA - PIGZ Frame_Shift_Del p.L544Ifs*39 0.22 TCGA-EE-A3JI-06 3 24003893 24003895 CAG - NR1D2 In_Frame_Del p.Q316del 0.22 TCGA-EE-A3JI-06 3 25665051 25665052 CA - TOP2B Frame_Shift_Del p.V889Efs*23 0.13 TCGA-EE-A3JI-06 3 29628691 29628691 G A RBMS3 Missense_Mutation p.A132T 0.40 deleterious(0) benign(0.421) TCGA-EE-A3JI-06 3 30885747 30885747 C T GADL1 Missense_Mutation p.M247I 0.43 tolerated(0.1) possibly_damaging(0.839) TCGA-EE-A3JI-06 3 35750560 35750560 G A ARPP21 Intron 0.42 TCGA-EE-A3JI-06 3 36871096 36871096 C T TRANK1 Missense_Mutation p.R2879Q 0.44 tolerated(0.61) benign(0.002) TCGA-EE-A3JI-06 3 36896953 36896953 C T TRANK1 Silent p.R1376R 0.38 TCGA-EE-A3JI-06 3 36897926 36897926 A C TRANK1 Missense_Mutation p.V1052G 0.38 tolerated(0.32) benign(0.001) TCGA-EE-A3JI-06 3 36897927 36897927 C T TRANK1 Missense_Mutation p.V1052I 0.38 tolerated(0.22) benign(0.001) TCGA-EE-A3JI-06 3 37365876 37365877 AG - GOLGA4 Frame_Shift_Del p.E856Kfs*10 0.16 TCGA-EE-A3JI-06 3 38348031 38348031 G A SLC22A14 Missense_Mutation p.E172K 0.19 deleterious(0.05) probably_damaging(0.989) TCGA-EE-A3JI-06 3 38524763 38524763 C T ACVR2B Silent p.L493L 0.48 TCGA-EE-A3JI-06 3 38739325 38739325 C T SCN10A Missense_Mutation p.D1796N 0.35 deleterious(0.02) possibly_damaging(0.583) TCGA-EE-A3JI-06 3 38739366 38739366 C T SCN10A Missense_Mutation p.R1782Q 0.38 tolerated(0.23) benign(0.002) TCGA-EE-A3JI-06 3 38755466 38755466 G A SCN10A Nonsense_Mutation p.R1263* 0.44 TCGA-EE-A3JI-06 3 38889190 38889190 G A SCN11A Silent p.F1457F 0.43 TCGA-EE-A3JI-06 3 38949515 38949515 C T SCN11A Silent p.R466R 0.36 TCGA-EE-A3JI-06 3 39170397 39170397 G A TTC21A Missense_Mutation p.E631K 0.47 deleterious(0.04) benign(0.271) TCGA-EE-A3JI-06 3 42915883 42915883 C T CYP8B1 Missense_Mutation p.D476N 0.44 tolerated(0.25) benign(0.091) TCGA-EE-A3JI-06 3 44684240 44684241 TG - ZNF197 Frame_Shift_Del p.C540* 0.23 TCGA-EE-A3JI-06 3 45518006 45518006 C T LARS2 Missense_Mutation p.T302I 0.40 deleterious(0.01) benign(0.142) TCGA-EE-A3JI-06 3 47284690 47284690 C T KIF9 Silent p.K520K 0.47 TCGA-EE-A3JI-06 3 47454229 47454229 C T PTPN23 Missense_Mutation p.L1489F 0.47 possibly_damaging(0.905) TCGA-EE-A3JI-06 3 48309809 48309809 C T ZNF589 Missense_Mutation p.P210S 0.29 tolerated(0.18) benign(0.004) TCGA-EE-A3JI-06 3 48309810 48309810 C T ZNF589 Missense_Mutation p.P210L 0.29 tolerated(1) benign(0.091) TCGA-EE-A3JI-06 3 48697010 48697010 G A CELSR3 Missense_Mutation p.R1020C 0.40 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 3 49052332 49052332 G T WDR6 Nonsense_Mutation p.E1023* 0.45 TCGA-EE-A3JI-06 3 49053943 49053943 G A DALRD3 Silent p.D355D 0.45 TCGA-EE-A3JI-06 3 49569061 49569061 C T DAG1 Nonsense_Mutation p.R373* 0.45 TCGA-EE-A3JI-06 3 49688098 49688098 C T BSN Silent p.S524S 0.43 TCGA-EE-A3JI-06 3 49928671 49928671 C T MST1R Silent p.E1201E 0.44 TCGA-EE-A3JI-06 3 50211675 50211675 G A SEMA3F Silent p.G116G 0.42 TCGA-EE-A3JI-06 3 50416925 50416925 C T CACNA2D2 Missense_Mutation p.V364M 0.44 tolerated(0.06) possibly_damaging(0.861) TCGA-EE-A3JI-06 3 51274960 51274960 C T DOCK3 Missense_Mutation p.H681Y 0.47 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JI-06 3 51426377 51426377 C T MANF Nonsense_Mutation p.R136* 0.26 TCGA-EE-A3JI-06 3 52021209 52021210 AG - ACY1 Frame_Shift_Del p.R236Afs*19 0.15 TCGA-EE-A3JI-06 3 52526214 52526214 C T NISCH Missense_Mutation p.R1411C 0.22 deleterious(0) probably_damaging(0.973) TCGA-EE-A3JI-06 3 52539755 52539755 G A STAB1 Silent p.V551V 0.40 TCGA-EE-A3JI-06 3 52556609 52556609 G A STAB1 Missense_Mutation p.G2217S 0.47 deleterious(0.02) possibly_damaging(0.775) TCGA-EE-A3JI-06 3 52556610 52556610 G A STAB1 Missense_Mutation p.G2217D 0.48 deleterious(0) probably_damaging(0.987) TCGA-EE-A3JI-06 3 53684914 53684914 A G CACNA1D Missense_Mutation p.N198D 0.38 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 3 53757999 53757999 C T CACNA1D Silent p.F711F 0.45 TCGA-EE-A3JI-06 3 53758000 53758000 C T CACNA1D Missense_Mutation p.P712S 0.45 deleterious(0.01) possibly_damaging(0.779) TCGA-EE-A3JI-06 3 54958994 54958994 G A LRTM1 Missense_Mutation p.L86F 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JI-06 3 57614557 57614557 A C DENND6A Missense_Mutation p.L559W 0.06 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 3 62189441 62189441 G A PTPRG Missense_Mutation p.G658R 0.52 tolerated(0.44) benign(0.009) TCGA-EE-A3JI-06 3 64133293 64133293 G A PRICKLE2 Silent p.S291S 0.39 TCGA-EE-A3JI-06 3 7494352 7494352 G A GRM7 Silent p.V411V 0.41 TCGA-EE-A3JI-06 3 86115857 86115857 C T CADM2 Missense_Mutation p.P413L 0.24 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 3 93734101 93734101 G A STX19 Missense_Mutation p.L5F 0.40 deleterious(0) probably_damaging(0.985) TCGA-EE-A3JI-06 3 9476009 9476009 C T SETD5 Intron 0.25 TCGA-EE-A3JI-06 3 9489684 9489684 C A SETD5 Silent p.T699T 0.50 TCGA-EE-A3JI-06 3 96706317 96706317 G A EPHA6 Missense_Mutation p.M198I 0.28 tolerated(0.47) benign(0.074) TCGA-EE-A3JI-06 3 9787362 9787362 C T BRPF1 Silent p.S1058S 0.49 TCGA-EE-A3JI-06 3 97983995 97983995 G A OR5H6 Missense_Mutation p.M289I 0.30 tolerated(0.43) benign(0.006) TCGA-EE-A3JI-06 3 98250982 98250982 C T GPR15 Silent p.F35F 0.22 TCGA-EE-A3JI-06 3 9974647 9974647 G A IL17RC Silent p.R582R 0.30 TCGA-EE-A3JI-06 4 102839334 102839334 C T BANK1 Silent p.F398F 0.47 TCGA-EE-A3JI-06 4 110451555 110451555 T G SEC24B Missense_Mutation p.S1063A 0.28 tolerated(0.11) benign(0.02) TCGA-EE-A3JI-06 4 113350325 113350325 C A ALPK1 Missense_Mutation p.D272E 0.29 tolerated(0.15) benign(0.022) TCGA-EE-A3JI-06 4 113353703 113353703 G A ALPK1 Silent p.G1000G 0.57 TCGA-EE-A3JI-06 4 128590269 128590270 TG - INTU Frame_Shift_Del p.C351* 0.22 TCGA-EE-A3JI-06 4 138450896 138450896 G A PCDH18 Missense_Mutation p.P783S 0.16 deleterious(0.01) probably_damaging(0.96) TCGA-EE-A3JI-06 4 142053555 142053555 G A RNF150 Silent p.F136F 0.50 TCGA-EE-A3JI-06 4 151504274 151504274 C T MAB21L2 Silent p.I31I 0.65 TCGA-EE-A3JI-06 4 152095957 152095957 G A SH3D19 Missense_Mutation p.P187S 0.33 tolerated(0.42) benign(0.005) TCGA-EE-A3JI-06 4 155665896 155665896 G A LRAT Missense_Mutation p.E140K 0.50 tolerated(0.19) probably_damaging(0.938) TCGA-EE-A3JI-06 4 159162704 159162704 G A TMEM144 Nonsense_Mutation p.W282* 0.28 TCGA-EE-A3JI-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.19 TCGA-EE-A3JI-06 4 171009587 171009587 C T AADAT Missense_Mutation p.E66K 0.46 tolerated(0.32) benign(0.005) TCGA-EE-A3JI-06 4 183959248 183959248 G A FAM92A1P2 RNA 0.50 TCGA-EE-A3JI-06 4 185039047 185039047 G A ENPP6 Silent p.G180G 0.35 TCGA-EE-A3JI-06 4 20525458 20525458 C T SLIT2 Silent p.S402S 0.47 TCGA-EE-A3JI-06 4 25379139 25379139 C T ANAPC4 Silent p.P30P 0.32 TCGA-EE-A3JI-06 4 25678354 25678354 G A SLC34A2 Missense_Mutation p.E686K 0.26 tolerated_low_confidence(0.83) benign(0) TCGA-EE-A3JI-06 4 3182247 3182247 C T HTT Missense_Mutation p.P1540S 0.31 probably_damaging(1) TCGA-EE-A3JI-06 4 3182248 3182248 C T HTT Missense_Mutation p.P1540L 0.32 probably_damaging(1) TCGA-EE-A3JI-06 4 3225781 3225781 C T HTT Missense_Mutation p.S2563L 0.50 benign(0.354) TCGA-EE-A3JI-06 4 3241730 3241730 C T HTT Missense_Mutation p.P3125S 0.27 probably_damaging(0.98) TCGA-EE-A3JI-06 4 3445875 3445875 G A HGFAC Silent p.K195K 0.65 TCGA-EE-A3JI-06 4 37903866 37903866 C T TBC1D1 Silent p.L50L 0.38 TCGA-EE-A3JI-06 4 38051328 38051328 G A TBC1D1 Silent p.S573S 0.52 TCGA-EE-A3JI-06 4 38691477 38691477 C T KLF3 Silent p.S224S 0.41 TCGA-EE-A3JI-06 4 40440590 40440590 G A RBM47 Silent p.D107D 0.51 TCGA-EE-A3JI-06 4 41015685 41015685 G A APBB2 Silent p.I250I 0.54 TCGA-EE-A3JI-06 4 42062260 42062260 A G SLC30A9 Missense_Mutation p.H298R 0.26 deleterious(0) probably_damaging(0.995) TCGA-EE-A3JI-06 4 47570941 47570941 G A ATP10D Missense_Mutation p.D981N 0.42 tolerated(0.5) benign(0.002) TCGA-EE-A3JI-06 4 47655579 47655579 C T CORIN Missense_Mutation p.E612K 0.34 tolerated(0.06) benign(0.144) TCGA-EE-A3JI-06 4 48636469 48636469 A G FRYL 5'UTR 0.49 TCGA-EE-A3JI-06 4 48636470 48636470 A T FRYL 5'UTR 0.46 TCGA-EE-A3JI-06 4 49005925 49005925 G A CWH43 Missense_Mutation p.E326K 0.39 tolerated(0.06) benign(0.419) TCGA-EE-A3JI-06 4 54231935 54231935 C A SCFD2 Missense_Mutation p.E58D 0.47 tolerated(0.17) probably_damaging(0.99) TCGA-EE-A3JI-06 4 54439943 54439943 G A LNX1 Missense_Mutation p.P76L 0.34 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 4 57182408 57182408 C T KIAA1211 Missense_Mutation p.P914S 0.53 tolerated(0.3) possibly_damaging(0.803) TCGA-EE-A3JI-06 4 57368120 57368120 C T SRP72 3'UTR 0.38 TCGA-EE-A3JI-06 4 6031493 6031493 C T JAKMIP1 Missense_Mutation p.E799K 0.57 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 4 6596334 6596334 G A MAN2B2 Missense_Mutation p.S311N 0.48 tolerated(0.28) benign(0.012) TCGA-EE-A3JI-06 4 68784789 68784789 G A TMPRSS11A Missense_Mutation p.S288L 0.22 deleterious(0) benign(0.407) TCGA-EE-A3JI-06 4 69681841 69681841 G A UGT2B10 Nonsense_Mutation p.W35* 0.46 TCGA-EE-A3JI-06 4 70350930 70350930 G A UGT2B4 Missense_Mutation p.P436S 0.43 tolerated(0.16) benign(0.247) TCGA-EE-A3JI-06 4 71255502 71255502 C T SMR3B Silent p.I59I 0.33 TCGA-EE-A3JI-06 4 74283914 74283914 C T ALB Missense_Mutation p.S513L 0.57 deleterious(0.01) possibly_damaging(0.526) TCGA-EE-A3JI-06 4 74319582 74319582 G A AFP Missense_Mutation p.G585S 0.28 tolerated(0.49) benign(0.054) TCGA-EE-A3JI-06 4 74319583 74319583 G A AFP Missense_Mutation p.G585D 0.29 tolerated(0.57) benign(0.032) TCGA-EE-A3JI-06 4 75938336 75938336 G A PARM1 Missense_Mutation p.E249K 0.18 deleterious(0) probably_damaging(0.971) TCGA-EE-A3JI-06 4 7725482 7725482 A G SORCS2 Missense_Mutation p.Y828C 0.40 deleterious(0) probably_damaging(0.984) TCGA-EE-A3JI-06 4 77660215 77660215 G A SHROOM3 Missense_Mutation p.E297K 0.35 deleterious(0) possibly_damaging(0.826) TCGA-EE-A3JI-06 4 78532279 78532279 G A CXCL13 3'UTR 0.67 TCGA-EE-A3JI-06 4 80329126 80329126 C T GK2 Missense_Mutation p.E77K 0.52 tolerated(1) benign(0.009) TCGA-EE-A3JI-06 4 81791162 81791162 C T C4orf22 Missense_Mutation p.R134C 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-EE-A3JI-06 4 8242577 8242577 G A SH3TC1 Silent p.Q1302Q 0.52 TCGA-EE-A3JI-06 4 83839611 83839611 T C THAP9 Missense_Mutation p.I749T 0.47 tolerated(0.44) benign(0) TCGA-EE-A3JI-06 4 85612913 85612913 G A WDFY3 Silent p.I3025I 0.33 TCGA-EE-A3JI-06 4 85747965 85747965 C T WDFY3 Intron 0.50 TCGA-EE-A3JI-06 4 8609072 8609072 G A CPZ Missense_Mutation p.D383N 0.48 deleterious(0) probably_damaging(0.982) TCGA-EE-A3JI-06 4 90816721 90816721 C T MMRN1 Missense_Mutation p.S200L 0.50 tolerated(0.06) benign(0.282) TCGA-EE-A3JI-06 4 94032105 94032105 G A GRID2 Splice_Site p.X245_splice 0.53 TCGA-EE-A3JI-06 4 9836604 9836604 C T SLC2A9 Silent p.E440E 0.44 TCGA-EE-A3JI-06 5 110411883 110411883 A C TSLP 3'Flank 0.62 TCGA-EE-A3JI-06 5 11117644 11117644 C T CTNND2 Missense_Mutation p.R732K 0.39 tolerated(0.39) benign(0.074) TCGA-EE-A3JI-06 5 112155002 112155002 G A APC Missense_Mutation p.E425K 0.34 benign(0.046) TCGA-EE-A3JI-06 5 118970084 118970084 G A FAM170A Missense_Mutation p.R214K 0.85 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JI-06 5 128368934 128368934 G A SLC27A6 Missense_Mutation p.E607K 0.82 deleterious(0.04) benign(0.23) TCGA-EE-A3JI-06 5 133451023 133451023 G A TCF7 Silent p.R87R 0.39 TCGA-EE-A3JI-06 5 135382971 135382972 TG - TGFBI Frame_Shift_Del p.V212Efs*22 0.24 TCGA-EE-A3JI-06 5 137715279 137715280 AC - KDM3B Frame_Shift_Del p.Y196* 0.18 TCGA-EE-A3JI-06 5 137803747 137803747 C T EGR1 Missense_Mutation p.P537S 0.83 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-EE-A3JI-06 5 139889280 139889280 T C ANKHD1 Missense_Mutation p.V1275A 0.85 benign(0.418) TCGA-EE-A3JI-06 5 140202658 140202658 C T PCDHA5 Missense_Mutation p.S433L 0.84 deleterious_low_confidence(0.04) possibly_damaging(0.596) TCGA-EE-A3JI-06 5 140308740 140308740 C T PCDHAC1 Missense_Mutation p.L755F 0.85 tolerated(0.2) benign(0.005) TCGA-EE-A3JI-06 5 140553770 140553770 A G PCDHB7 Missense_Mutation p.T452A 0.39 deleterious_low_confidence(0.03) benign(0.004) TCGA-EE-A3JI-06 5 140682600 140682600 G A SLC25A2 Missense_Mutation p.P278L 0.85 tolerated(0.06) possibly_damaging(0.651) TCGA-EE-A3JI-06 5 140682602 140682602 G C SLC25A2 Missense_Mutation p.I277M 0.85 deleterious(0.01) benign(0.192) TCGA-EE-A3JI-06 5 140746235 140746235 C T PCDHGA5 Missense_Mutation p.L780F 0.84 deleterious_low_confidence(0) benign(0.382) TCGA-EE-A3JI-06 5 140752194 140752194 G A PCDHGB3 Missense_Mutation p.E745K 0.93 deleterious(0.02) benign(0.295) TCGA-EE-A3JI-06 5 140754809 140754809 C T PCDHGA6 Missense_Mutation p.P387S 0.90 tolerated_low_confidence(0.42) benign(0.023) TCGA-EE-A3JI-06 5 140811682 140811682 C T PCDHGA12 Silent p.F452F 0.88 TCGA-EE-A3JI-06 5 14291101 14291101 G A TRIO Missense_Mutation p.E273K 0.43 probably_damaging(0.955) TCGA-EE-A3JI-06 5 145435663 145435663 C T SH3RF2 Missense_Mutation p.P481L 0.89 deleterious(0.02) possibly_damaging(0.493) TCGA-EE-A3JI-06 5 145895587 145895588 AG - GPR151 Frame_Shift_Del p.S30* 0.07 TCGA-EE-A3JI-06 5 147821723 147821723 C T FBXO38 3'UTR 0.86 TCGA-EE-A3JI-06 5 147821724 147821724 C T FBXO38 3'UTR 0.86 TCGA-EE-A3JI-06 5 160721205 160721205 C T GABRB2 Silent p.L474L 0.86 TCGA-EE-A3JI-06 5 161524701 161524701 A C GABRG2 Missense_Mutation p.N129H 0.55 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 5 176008476 176008476 G A CDHR2 Missense_Mutation p.E651K 0.54 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 5 176721950 176721950 G A NSD1 Nonsense_Mutation p.W2527* 0.20 TCGA-EE-A3JI-06 5 176778689 176778689 C T LMAN2 5'UTR 0.44 TCGA-EE-A3JI-06 5 179220991 179220991 C T LTC4S 5'UTR 0.42 TCGA-EE-A3JI-06 5 1816024 1816024 C G NDUFS6 Missense_Mutation p.H123Q 0.04 tolerated(0.06) benign(0.19) TCGA-EE-A3JI-06 5 21842282 21842282 G A CDH12 Nonsense_Mutation p.R268* 0.44 TCGA-EE-A3JI-06 5 26881162 26881162 C T CDH9 3'UTR 0.50 TCGA-EE-A3JI-06 5 26881634 26881634 C T CDH9 Missense_Mutation p.D661N 0.45 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 5 31302346 31302346 G A CDH6 Missense_Mutation p.D314N 0.42 tolerated(0.38) benign(0.002) TCGA-EE-A3JI-06 5 35010230 35010230 C T AGXT2 Missense_Mutation p.E405K 0.51 tolerated(0.42) benign(0.003) TCGA-EE-A3JI-06 5 35086398 35086398 G A PRLR Missense_Mutation p.P39S 0.42 deleterious(0) benign(0.338) TCGA-EE-A3JI-06 5 35857148 35857148 C T IL7R Silent p.G23G 0.35 TCGA-EE-A3JI-06 5 35954242 35954242 G A UGT3A1 3'UTR 0.47 TCGA-EE-A3JI-06 5 37299634 37299634 C T NUP155 Missense_Mutation p.E1200K 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-EE-A3JI-06 5 39202484 39202484 G A FYB Silent p.F203F 0.41 TCGA-EE-A3JI-06 5 40981663 40981663 G A C7 Silent p.A840A 0.35 TCGA-EE-A3JI-06 5 41064604 41064604 C T MROH2B Missense_Mutation p.D144N 0.31 tolerated(0.08) benign(0.085) TCGA-EE-A3JI-06 5 42719193 42719193 C T GHR Silent p.F528F 0.38 TCGA-EE-A3JI-06 5 42719292 42719292 C T GHR Silent p.N561N 0.26 TCGA-EE-A3JI-06 5 49699045 49699045 C T EMB Missense_Mutation p.E282K 0.34 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 5 52954388 52954388 C T NDUFS4 Missense_Mutation p.P120S 0.50 deleterious(0) probably_damaging(0.996) TCGA-EE-A3JI-06 5 55168105 55168105 G A IL31RA Missense_Mutation p.G94R 0.38 tolerated(0.15) benign(0.046) TCGA-EE-A3JI-06 5 56177863 56177864 AC - MAP3K1 Frame_Shift_Del p.T946Nfs*57 0.26 TCGA-EE-A3JI-06 5 66462575 66462575 C T MAST4 Missense_Mutation p.S2523F 0.48 possibly_damaging(0.741) TCGA-EE-A3JI-06 5 66462576 66462576 C T MAST4 Silent p.S2523S 0.52 TCGA-EE-A3JI-06 5 71528294 71528294 G A MRPS27 Silent p.C189C 0.43 TCGA-EE-A3JI-06 5 72192962 72192964 GTT - TNPO1 In_Frame_Del p.L776del 0.30 TCGA-EE-A3JI-06 5 7773063 7773063 A G ADCY2 Missense_Mutation p.I745V 0.15 tolerated(0.24) benign(0.002) TCGA-EE-A3JI-06 5 81574194 81574194 C A RPS23 5'UTR 0.19 TCGA-EE-A3JI-06 5 82838072 82838072 G A VCAN Missense_Mutation p.A3084T 0.38 deleterious(0) benign(0.299) TCGA-EE-A3JI-06 5 86564656 86564656 C T RASA1 Missense_Mutation p.P130S 0.35 deleterious_low_confidence(0.04) benign(0.005) TCGA-EE-A3JI-06 5 86564657 86564657 C T RASA1 Missense_Mutation p.P130L 0.35 deleterious_low_confidence(0.01) benign(0.008) TCGA-EE-A3JI-06 5 86659237 86659237 G A RASA1 Missense_Mutation p.S509N 0.43 tolerated(1) benign(0.015) TCGA-EE-A3JI-06 5 90015878 90015878 C T GPR98 Missense_Mutation p.S3154F 0.36 probably_damaging(0.962) TCGA-EE-A3JI-06 5 90052274 90052274 G A GPR98 Missense_Mutation p.D3862N 0.45 benign(0.001) TCGA-EE-A3JI-06 5 9043098 9043098 C T SEMA5A Missense_Mutation p.E1046K 0.54 deleterious(0.01) possibly_damaging(0.888) TCGA-EE-A3JI-06 5 9043099 9043099 C T SEMA5A Silent p.E1045E 0.54 TCGA-EE-A3JI-06 5 90669509 90669510 AA - ARRDC3 Frame_Shift_Del p.Y394Ffs*4 0.15 TCGA-EE-A3JI-06 5 95234484 95234484 G A ELL2 Missense_Mutation p.P329S 0.45 deleterious(0.02) possibly_damaging(0.578) TCGA-EE-A3JI-06 5 95733109 95733109 C T PCSK1 Nonsense_Mutation p.W551* 0.45 TCGA-EE-A3JI-06 5 96506961 96506961 G A RIOK2 Missense_Mutation p.T243I 0.34 tolerated(0.48) benign(0.03) TCGA-EE-A3JI-06 6 100403968 100403968 G A MCHR2 Missense_Mutation p.S19F 0.46 deleterious(0.03) benign(0.049) TCGA-EE-A3JI-06 6 107016346 107016346 G A AIM1 Splice_Site p.X1693_splice 0.56 TCGA-EE-A3JI-06 6 107780385 107780385 C T PDSS2 Silent p.V35V 0.60 TCGA-EE-A3JI-06 6 109282807 109282807 G A ARMC2 Missense_Mutation p.V650M 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-EE-A3JI-06 6 110777825 110777825 C T SLC22A16 Missense_Mutation p.R150Q 0.40 tolerated(0.4) benign(0.277) TCGA-EE-A3JI-06 6 11185769 11185771 AGA - NEDD9 In_Frame_Del p.F710del 0.17 TCGA-EE-A3JI-06 6 116988073 116988073 A C ZUFSP Missense_Mutation p.C95G 0.27 tolerated(0.06) benign(0) TCGA-EE-A3JI-06 6 119295648 119295648 C T FAM184A Missense_Mutation p.D954N 0.54 deleterious(0) probably_damaging(0.928) TCGA-EE-A3JI-06 6 133078922 133078922 G A VNN2 Missense_Mutation p.A34V 0.24 deleterious(0.03) benign(0.099) TCGA-EE-A3JI-06 6 133767884 133767884 G A EYA4 Missense_Mutation p.G67E 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3JI-06 6 135300379 135300379 T G HBS1L Missense_Mutation p.D542A 0.58 tolerated(0.29) probably_damaging(0.994) TCGA-EE-A3JI-06 6 135300380 135300380 C T HBS1L Missense_Mutation p.D542N 0.59 tolerated(0.48) probably_damaging(0.997) TCGA-EE-A3JI-06 6 136599564 136599564 T C BCLAF1 Missense_Mutation p.K152R 0.34 tolerated_low_confidence(0.17) benign(0.341) TCGA-EE-A3JI-06 6 139175232 139175232 A G ECT2L Missense_Mutation p.Y380C 0.27 tolerated(0.24) benign(0.001) TCGA-EE-A3JI-06 6 139591700 139591700 G T TXLNB Missense_Mutation p.Q194K 0.67 tolerated(0.29) possibly_damaging(0.602) TCGA-EE-A3JI-06 6 146214476 146214476 G A SHPRH Silent p.P1583P 0.18 TCGA-EE-A3JI-06 6 151121946 151121946 C T PLEKHG1 Silent p.L241L 0.62 TCGA-EE-A3JI-06 6 151673453 151673454 AG - AKAP12 Frame_Shift_Del p.E1310Rfs*3 0.16 TCGA-EE-A3JI-06 6 151894440 151894440 T A CCDC170 Silent p.S302S 0.35 TCGA-EE-A3JI-06 6 152826342 152826342 G A SYNE1 Missense_Mutation p.P258S 0.35 benign(0.141) TCGA-EE-A3JI-06 6 154412543 154412543 G A OPRM1 Missense_Mutation p.R460Q 0.54 deleterious(0.03) possibly_damaging(0.761) TCGA-EE-A3JI-06 6 154727768 154727768 C T CNKSR3 Missense_Mutation p.R463Q 0.46 tolerated(0.06) possibly_damaging(0.883) TCGA-EE-A3JI-06 6 160953628 160953628 C T LPA Missense_Mutation p.E1966K 0.28 tolerated(1) benign(0.329) TCGA-EE-A3JI-06 6 161132202 161132202 C T PLG Missense_Mutation p.S129F 0.37 deleterious(0.01) benign(0.285) TCGA-EE-A3JI-06 6 165703502 165703502 A G C6orf118 Missense_Mutation p.V392A 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-EE-A3JI-06 6 169053761 169053761 C T SMOC2 Missense_Mutation p.R391C 0.61 deleterious(0) probably_damaging(0.988) TCGA-EE-A3JI-06 6 170110429 170110429 G A PHF10 Missense_Mutation p.S339F 0.49 deleterious(0.03) benign(0.129) TCGA-EE-A3JI-06 6 24475372 24475372 C T GPLD1 Missense_Mutation p.G140R 0.40 deleterious(0.03) possibly_damaging(0.641) TCGA-EE-A3JI-06 6 25726547 25726547 G C HIST1H2AA Missense_Mutation p.A70G 0.43 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-EE-A3JI-06 6 25777204 25777204 C T SLC17A4 Intron 0.31 TCGA-EE-A3JI-06 6 25811773 25811773 C T SLC17A1 Missense_Mutation p.G344E 0.45 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 6 26428952 26428952 T A BTN2A3P RNA 0.17 TCGA-EE-A3JI-06 6 27835110 27835110 C T HIST1H1B Silent p.K66K 0.38 TCGA-EE-A3JI-06 6 27925335 27925335 C T OR2B6 Missense_Mutation p.A106V 0.35 tolerated(0.17) possibly_damaging(0.753) TCGA-EE-A3JI-06 6 27925336 27925336 C T OR2B6 Silent p.A106A 0.33 TCGA-EE-A3JI-06 6 2833937 2833937 C T SERPINB1 Missense_Mutation p.E349K 0.44 tolerated(0.3) benign(0.052) TCGA-EE-A3JI-06 6 28889741 28889744 GTCG ATC TRIM27 Frame_Shift_Del p.D148Ifs*3 0.24 TCGA-EE-A3JI-06 6 29634038 29634039 GA - MOG Frame_Shift_Del p.G184Kfs*14 0.18 TCGA-EE-A3JI-06 6 30043512 30043512 G A RNF39 Missense_Mutation p.P19S 0.39 deleterious_low_confidence(0.01) benign(0.117) TCGA-EE-A3JI-06 6 30043513 30043513 G A RNF39 Silent p.I18I 0.39 TCGA-EE-A3JI-06 6 30632944 30632944 G A DHX16 Silent p.A343A 0.39 TCGA-EE-A3JI-06 6 30672022 30672022 A T MDC1 Silent p.S1646S 0.42 TCGA-EE-A3JI-06 6 30672023 30672023 G A MDC1 Missense_Mutation p.S1646F 0.42 deleterious(0.03) benign(0.035) TCGA-EE-A3JI-06 6 30676073 30676073 C T MDC1 Silent p.E761E 0.41 TCGA-EE-A3JI-06 6 31779300 31779300 G A HSPA1L Silent p.A150A 0.33 TCGA-EE-A3JI-06 6 31896607 31896607 G A CFB Intron 0.44 TCGA-EE-A3JI-06 6 31918680 31918680 G A CFB Missense_Mutation p.R1107Q 0.40 tolerated(0.38) benign(0.045) TCGA-EE-A3JI-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.22 tolerated_low_confidence(0.07) benign(0.108) TCGA-EE-A3JI-06 6 31962366 31962366 G A C4A Missense_Mutation p.R895Q 0.51 tolerated(0.14) benign(0.04) TCGA-EE-A3JI-06 6 31996995 31996995 G A C4B Missense_Mutation p.G1186R 0.24 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 6 32014231 32014231 G T TNXB 5'Flank 0.48 TCGA-EE-A3JI-06 6 32014232 32014232 A T TNXB 5'Flank 0.47 TCGA-EE-A3JI-06 6 32036443 32036443 G A TNXB Missense_Mutation p.P1982S 0.40 benign(0.02) TCGA-EE-A3JI-06 6 32609155 32609155 G A HLA-DQA1 Missense_Mutation p.E51K 0.48 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 6 33740395 33740395 C T LEMD2 3'UTR 0.45 TCGA-EE-A3JI-06 6 36179185 36179185 C T BRPF3 Missense_Mutation p.A777V 0.45 tolerated(0.37) benign(0.031) TCGA-EE-A3JI-06 6 36259114 36259114 C G PNPLA1 Missense_Mutation p.L75V 0.54 tolerated(0.09) probably_damaging(0.926) TCGA-EE-A3JI-06 6 36285108 36285108 G A C6orf222 3'UTR 0.43 TCGA-EE-A3JI-06 6 39046751 39046751 C T GLP1R Silent p.S301S 0.46 TCGA-EE-A3JI-06 6 43126660 43126660 C T PTK7 Nonsense_Mutation p.Q951* 0.46 TCGA-EE-A3JI-06 6 43230705 43230705 G A TTBK1 Missense_Mutation p.E535K 0.36 probably_damaging(0.995) TCGA-EE-A3JI-06 6 44102451 44102451 G C TMEM63B Missense_Mutation p.V44L 0.04 deleterious(0) benign(0.028) TCGA-EE-A3JI-06 6 44336148 44336148 A G SPATS1 Missense_Mutation p.T203A 0.39 tolerated(0.14) benign(0.138) TCGA-EE-A3JI-06 6 49754297 49754297 C T PGK2 Missense_Mutation p.E202K 0.23 deleterious(0.01) benign(0.312) TCGA-EE-A3JI-06 6 51889911 51889911 G A PKHD1 Missense_Mutation p.S1566F 0.45 deleterious(0) possibly_damaging(0.751) TCGA-EE-A3JI-06 6 52052520 52052520 G A IL17A Silent p.L49L 0.39 TCGA-EE-A3JI-06 6 53883791 53883791 C T MLIP 5'UTR 0.33 TCGA-EE-A3JI-06 6 53986293 53986293 C T MLIP Missense_Mutation p.P38S 0.27 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 6 55739713 55739713 A G BMP5 5'UTR 0.47 TCGA-EE-A3JI-06 6 56462805 56462805 C T DST Splice_Site p.X1354_splice 0.57 TCGA-EE-A3JI-06 6 56469702 56469702 T C DST Intron 0.41 TCGA-EE-A3JI-06 6 70064192 70064192 C T BAI3 Missense_Mutation p.S1176L 0.35 deleterious(0) benign(0.041) TCGA-EE-A3JI-06 6 75812356 75812356 G A COL12A1 Missense_Mutation p.P2791L 0.55 probably_damaging(0.96) TCGA-EE-A3JI-06 6 76023594 76023594 C T FILIP1 Missense_Mutation p.D652N 0.27 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 6 76657064 76657064 C T IMPG1 Missense_Mutation p.E671K 0.59 tolerated(0.08) probably_damaging(0.977) TCGA-EE-A3JI-06 6 80750364 80750364 G A TTK Missense_Mutation p.V812I 0.35 tolerated(1) benign(0.004) TCGA-EE-A3JI-06 6 82891739 82891739 A T IBTK Silent p.S1194S 0.54 TCGA-EE-A3JI-06 6 84270636 84270636 G A SNAP91 Missense_Mutation p.P825S 0.47 deleterious(0.03) probably_damaging(0.986) TCGA-EE-A3JI-06 6 84630843 84630843 T C CYB5R4 Missense_Mutation p.S203P 0.31 tolerated(0.27) benign(0.319) TCGA-EE-A3JI-06 6 87725524 87725524 C T HTR1E Silent p.L158L 0.30 TCGA-EE-A3JI-06 6 90381983 90381983 G A MDN1 Missense_Mutation p.A4577V 0.62 benign(0.017) TCGA-EE-A3JI-06 6 94120355 94120355 C T EPHA7 Silent p.G232G 0.29 TCGA-EE-A3JI-06 6 96651051 96651051 G A FUT9 Missense_Mutation p.G7E 0.49 tolerated(0.67) possibly_damaging(0.755) TCGA-EE-A3JI-06 6 97053792 97053792 G A FHL5 Missense_Mutation p.E117K 0.67 deleterious(0.03) benign(0.369) TCGA-EE-A3JI-06 6 99958081 99958081 G A USP45 Missense_Mutation p.P6S 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EE-A3JI-06 7 100192755 100192755 C T FBXO24 Missense_Mutation p.T366I 0.29 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-EE-A3JI-06 7 100212554 100212554 G A MOSPD3 Silent p.V192V 0.58 TCGA-EE-A3JI-06 7 100333389 100333389 G A ZAN Missense_Mutation p.D34N 0.17 possibly_damaging(0.842) TCGA-EE-A3JI-06 7 100391745 100391745 G A ZAN Intron 0.56 TCGA-EE-A3JI-06 7 100551905 100551905 G A MUC3A Missense_Mutation p.G219E 0.11 tolerated(0.37) probably_damaging(0.972) TCGA-EE-A3JI-06 7 100958495 100958495 C T RABL5 Missense_Mutation p.E160K 0.29 tolerated(0.06) possibly_damaging(0.889) TCGA-EE-A3JI-06 7 102769132 102769132 G A NAPEPLD Missense_Mutation p.S31F 0.67 deleterious(0.01) possibly_damaging(0.866) TCGA-EE-A3JI-06 7 103038452 103038452 C T SLC26A5 Missense_Mutation p.G300R 0.55 deleterious(0) probably_damaging(0.963) TCGA-EE-A3JI-06 7 104752698 104752699 TT - KMT2E Frame_Shift_Del p.F1499Lfs*36 0.27 TCGA-EE-A3JI-06 7 105187408 105187408 C T RINT1 Silent p.S189S 0.58 TCGA-EE-A3JI-06 7 106526678 106526678 T G PIK3CG Missense_Mutation p.F991V 0.22 deleterious(0) probably_damaging(0.929) TCGA-EE-A3JI-06 7 107217950 107217950 C T DUS4L Missense_Mutation p.A300V 0.29 tolerated(0.42) benign(0.008) TCGA-EE-A3JI-06 7 111398779 111398779 C T DOCK4 Silent p.P1401P 0.43 TCGA-EE-A3JI-06 7 122338182 122338182 T G RNF133 Missense_Mutation p.K264T 0.07 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 7 123296237 123296237 G A LMOD2 Missense_Mutation p.E74K 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-EE-A3JI-06 7 129497352 129497352 A C UBE2H Nonsense_Mutation p.Y99* 0.31 TCGA-EE-A3JI-06 7 134217817 134217817 T C AKR1B10 Missense_Mutation p.F138S 0.22 tolerated(0.06) probably_damaging(0.94) TCGA-EE-A3JI-06 7 134363695 134363695 C A BPGM Missense_Mutation p.P231H 0.28 deleterious(0.01) benign(0.147) TCGA-EE-A3JI-06 7 135079073 135079073 G A CNOT4 Silent p.F408F 0.52 TCGA-EE-A3JI-06 7 135282769 135282769 C T NUP205 Silent p.S696S 0.61 TCGA-EE-A3JI-06 7 138430021 138430021 C T ATP6V0A4 Nonsense_Mutation p.W442* 0.31 TCGA-EE-A3JI-06 7 139106912 139106912 C T LUC7L2 Silent p.S401S 0.47 TCGA-EE-A3JI-06 7 139313701 139313701 G A HIPK2 Nonsense_Mutation p.Q478* 0.62 TCGA-EE-A3JI-06 7 142240017 142240017 G A TRBV9 5'UTR 0.58 TCGA-EE-A3JI-06 7 142250815 142250815 C T TRBV6-4 Missense_Mutation p.E78K 0.30 deleterious(0) possibly_damaging(0.879) TCGA-EE-A3JI-06 7 142458565 142458565 C T PRSS1 Missense_Mutation p.S67F 0.32 deleterious(0.01) benign(0.323) TCGA-EE-A3JI-06 7 142498745 142498745 C A TRBC2 Missense_Mutation p.P8T 0.16 deleterious(0.01) benign(0.384) TCGA-EE-A3JI-06 7 142639585 142639585 C T KEL Missense_Mutation p.G658E 0.30 tolerated(0.5) possibly_damaging(0.734) TCGA-EE-A3JI-06 7 142961652 142961652 C T GSTK1 Missense_Mutation p.P56S 0.25 deleterious(0) benign(0.23) TCGA-EE-A3JI-06 7 142961653 142961653 C T GSTK1 Missense_Mutation p.P56L 0.25 deleterious(0) possibly_damaging(0.571) TCGA-EE-A3JI-06 7 143140905 143140905 G A TAS2R60 Silent p.V120V 0.56 TCGA-EE-A3JI-06 7 143268938 143268938 C T CTAGE15 Missense_Mutation p.P10S 0.46 tolerated(0.15) benign(0.105) TCGA-EE-A3JI-06 7 143632538 143632538 C T OR2F2 Silent p.V71V 0.31 TCGA-EE-A3JI-06 7 147815211 147815211 G A CNTNAP2 Silent p.R795R 0.30 TCGA-EE-A3JI-06 7 148964213 148964213 C T ZNF783 Silent p.I191I 0.36 TCGA-EE-A3JI-06 7 149129486 149129486 G A ZNF777 Missense_Mutation p.S626F 0.32 deleterious_low_confidence(0.03) benign(0.165) TCGA-EE-A3JI-06 7 149191334 149191334 G A ZNF746 Silent p.I95I 0.25 TCGA-EE-A3JI-06 7 149558231 149558231 C T ZNF862 Missense_Mutation p.P661L 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-EE-A3JI-06 7 150745878 150745878 C T ASIC3 5'Flank 0.61 TCGA-EE-A3JI-06 7 150972296 150972296 G A SMARCD3 5'UTR 0.28 TCGA-EE-A3JI-06 7 154863050 154863050 G A HTR5A Missense_Mutation p.M147I 0.29 tolerated(0.28) benign(0) TCGA-EE-A3JI-06 7 154863263 154863263 C T HTR5A Silent p.F218F 0.60 TCGA-EE-A3JI-06 7 155301711 155301711 C T CNPY1 Missense_Mutation p.E8K 0.53 tolerated(0.61) benign(0.428) TCGA-EE-A3JI-06 7 156447389 156447389 G A RNF32 Missense_Mutation p.E132K 0.47 deleterious(0) possibly_damaging(0.755) TCGA-EE-A3JI-06 7 156476796 156476796 T A LMBR1 Silent p.V483V 0.61 TCGA-EE-A3JI-06 7 19765303 19765303 G A TMEM196 Missense_Mutation p.S98F 0.42 deleterious(0.02) possibly_damaging(0.683) TCGA-EE-A3JI-06 7 23808674 23808674 G A STK31 Missense_Mutation p.E493K 0.21 tolerated(0.07) benign(0.099) TCGA-EE-A3JI-06 7 23826539 23826539 C T STK31 Missense_Mutation p.S828L 0.46 tolerated(0.21) benign(0.042) TCGA-EE-A3JI-06 7 34085940 34085940 G A BMPER Missense_Mutation p.R200K 0.58 tolerated(1) benign(0.007) TCGA-EE-A3JI-06 7 38725279 38725279 C T FAM183B Missense_Mutation p.M109I 0.27 tolerated(0.07) benign(0.001) TCGA-EE-A3JI-06 7 42004786 42004786 G A GLI3 Silent p.F1295F 0.51 TCGA-EE-A3JI-06 7 43447209 43447209 C T HECW1 Missense_Mutation p.P227L 0.55 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 7 44105077 44105077 G A PGAM2 Nonsense_Mutation p.Q18* 0.27 TCGA-EE-A3JI-06 7 45018641 45018641 G A MYO1G 5'UTR 0.77 TCGA-EE-A3JI-06 7 45018642 45018642 G A MYO1G 5'UTR 0.83 TCGA-EE-A3JI-06 7 48314082 48314082 A G ABCA13 Missense_Mutation p.S1607G 0.17 benign(0.005) TCGA-EE-A3JI-06 7 5104648 5104648 C T RBAK Missense_Mutation p.L521F 0.57 tolerated(0.6) probably_damaging(0.964) TCGA-EE-A3JI-06 7 5391461 5391461 G A TNRC18 Missense_Mutation p.S1820L 0.33 probably_damaging(0.996) TCGA-EE-A3JI-06 7 57522870 57522870 C T ZNF716 Silent p.H86H 0.51 TCGA-EE-A3JI-06 7 57529366 57529366 G A ZNF716 Missense_Mutation p.R400K 0.66 tolerated(0.4) benign(0.002) TCGA-EE-A3JI-06 7 64378080 64378080 T A ZNF273 Missense_Mutation p.F75Y 0.23 deleterious(0.04) probably_damaging(0.973) TCGA-EE-A3JI-06 7 72419276 72419276 C T POM121 3'UTR 0.32 TCGA-EE-A3JI-06 7 73151384 73151384 G A ABHD11 Silent p.F230F 0.27 TCGA-EE-A3JI-06 7 76255297 76255297 C T UPK3B Intron 0.57 TCGA-EE-A3JI-06 7 82579060 82579060 G A PCLO Missense_Mutation p.S3615F 0.56 unknown(0) TCGA-EE-A3JI-06 7 82579076 82579076 C T PCLO Missense_Mutation p.V3610I 0.29 unknown(0) TCGA-EE-A3JI-06 7 82582174 82582174 G A PCLO Missense_Mutation p.P2699S 0.24 unknown(0) TCGA-EE-A3JI-06 7 82584283 82584283 A G PCLO Missense_Mutation p.S1996P 0.53 unknown(0) TCGA-EE-A3JI-06 7 86509800 86509800 G A KIAA1324L Missense_Mutation p.S1026F 0.26 deleterious(0) possibly_damaging(0.61) TCGA-EE-A3JI-06 7 86537023 86537023 G A KIAA1324L Missense_Mutation p.P841S 0.29 deleterious(0) possibly_damaging(0.714) TCGA-EE-A3JI-06 7 87195442 87195442 G A ABCB1 Missense_Mutation p.L216F 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-EE-A3JI-06 7 87370828 87370828 G A RUNDC3B Missense_Mutation p.G205R 0.20 deleterious(0) probably_damaging(0.997) TCGA-EE-A3JI-06 7 88964946 88964946 G A ZNF804B Missense_Mutation p.G884R 0.38 tolerated(0.11) benign(0.038) TCGA-EE-A3JI-06 7 91630434 91630434 C T AKAP9 Silent p.V401V 0.51 TCGA-EE-A3JI-06 7 94293505 94293505 C T PEG10 Missense_Mutation p.H213Y 0.24 tolerated(0.11) benign(0.009) TCGA-EE-A3JI-06 7 98257818 98257818 C T NPTX2 Silent p.I391I 0.43 TCGA-EE-A3JI-06 7 98606063 98606063 C T TRRAP Missense_Mutation p.S3592F 0.26 probably_damaging(0.967) TCGA-EE-A3JI-06 7 98606064 98606064 C T TRRAP Silent p.S3592S 0.26 TCGA-EE-A3JI-06 7 99008806 99008806 G A BUD31 Missense_Mutation p.E31K 0.54 deleterious(0) benign(0.305) TCGA-EE-A3JI-06 7 99057785 99057785 G A PTCD1 Silent p.V15V 0.32 TCGA-EE-A3JI-06 7 99218999 99218999 C G ZSCAN25 Missense_Mutation p.P131A 0.30 tolerated(0.05) probably_damaging(0.994) TCGA-EE-A3JI-06 7 99306852 99306852 C T CYP3A7 Silent p.L353L 0.25 TCGA-EE-A3JI-06 8 103266681 103266681 G A UBR5 Missense_Mutation p.P2750L 0.54 deleterious(0) probably_damaging(0.991) TCGA-EE-A3JI-06 8 103563995 103563995 G A ODF1 Missense_Mutation p.D14N 0.21 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-EE-A3JI-06 8 10469293 10469293 G A RP1L1 Missense_Mutation p.S772L 0.22 benign(0.074) TCGA-EE-A3JI-06 8 106813294 106813294 C T ZFPM2 Silent p.F328F 0.24 TCGA-EE-A3JI-06 8 106814835 106814835 G A ZFPM2 Missense_Mutation p.R842Q 0.36 tolerated(0.2) benign(0.013) TCGA-EE-A3JI-06 8 110431437 110431437 C T PKHD1L1 Silent p.F824F 0.19 TCGA-EE-A3JI-06 8 110478816 110478816 G A PKHD1L1 Missense_Mutation p.G2808E 0.54 deleterious(0.01) possibly_damaging(0.471) TCGA-EE-A3JI-06 8 110530532 110530532 C T PKHD1L1 Silent p.F3942F 0.28 TCGA-EE-A3JI-06 8 113841986 113841986 C T CSMD3 Silent p.L596L 0.27 TCGA-EE-A3JI-06 8 116631714 116631714 G A TRPS1 Missense_Mutation p.S204L 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EE-A3JI-06 8 11705330 11705330 C T CTSB Silent p.G178G 0.50 TCGA-EE-A3JI-06 8 11705331 11705331 C T CTSB Missense_Mutation p.G178E 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-EE-A3JI-06 8 12040225 12040226 AT - FAM86B1 3'UTR 0.14 TCGA-EE-A3JI-06 8 122627011 122627011 G A HAS2 Nonsense_Mutation p.R333* 0.64 TCGA-EE-A3JI-06 8 123963952 123963952 G A ZHX2 Missense_Mutation p.E68K 0.56 tolerated(0.33) benign(0.193) TCGA-EE-A3JI-06 8 124335307 124335307 C T ATAD2 Splice_Site p.X1335_splice 0.29 TCGA-EE-A3JI-06 8 128750708 128750708 C T MYC Missense_Mutation p.S82F 0.31 tolerated(0.1) probably_damaging(0.975) TCGA-EE-A3JI-06 8 133627324 133627324 C T LRRC6 Missense_Mutation p.D312N 0.27 deleterious(0.02) benign(0.275) TCGA-EE-A3JI-06 8 139163495 139163495 C T FAM135B Missense_Mutation p.G1075R 0.23 deleterious(0.03) possibly_damaging(0.643) TCGA-EE-A3JI-06 8 139611102 139611102 C T COL22A1 Missense_Mutation p.G1409R 0.14 unknown(0) TCGA-EE-A3JI-06 8 142487553 142487553 A G MROH5 3'UTR 0.16 TCGA-EE-A3JI-06 8 143784842 143784842 C T LY6K 3'UTR 0.69 TCGA-EE-A3JI-06 8 143995794 143995794 G A CYP11B2 Silent p.F280F 0.28 TCGA-EE-A3JI-06 8 144130679 144130679 G A C8orf31 3'UTR 0.28 TCGA-EE-A3JI-06 8 144662304 144662304 C T EEF1D Missense_Mutation p.G595R 0.29 deleterious(0) probably_damaging(0.998) TCGA-EE-A3JI-06 8 144662305 144662305 C T EEF1D Nonsense_Mutation p.W594* 0.28 TCGA-EE-A3JI-06 8 144940221 144940221 G A EPPK1 Silent p.L2401L 0.14 TCGA-EE-A3JI-06 8 144941932 144941932 G A EPPK1 Silent p.I1830I 0.60 TCGA-EE-A3JI-06 8 145012363 145012363 G A PLEC Missense_Mutation p.H211Y 0.19 unknown(0) TCGA-EE-A3JI-06 8 145154268 145154269 CA - SHARPIN Frame_Shift_Del p.V278Afs*2 0.18 TCGA-EE-A3JI-06 8 145579332 145579333 CA - FBXL6 Frame_Shift_Del p.V493Dfs*80 0.21 TCGA-EE-A3JI-06 8 145583692 145583692 C T SLC52A2 Silent p.T180T 0.64 TCGA-EE-A3JI-06 8 145770925 145770925 G A ARHGAP39 Silent p.A743A 0.28 TCGA-EE-A3JI-06 8 17944394 17944394 C T ASAH1 5'Flank 0.50 TCGA-EE-A3JI-06 8 1828258 1828258 G C ARHGEF10 Missense_Mutation p.K296N 0.27 deleterious(0.01) possibly_damaging(0.786) TCGA-EE-A3JI-06 8 20003309 20003309 C T SLC18A1 Missense_Mutation p.E515K 0.25 tolerated(0.08) benign(0.014) TCGA-EE-A3JI-06 8 22051977 22051977 G A BMP1 Silent p.V439V 0.30 TCGA-EE-A3JI-06 8 22102540 22102540 G A POLR3D 5'Flank 0.27 TCGA-EE-A3JI-06 8 22864607 22864607 C T RHOBTB2 Silent p.I305I 0.53 TCGA-EE-A3JI-06 8 23428959 23428959 C T SLC25A37 Missense_Mutation p.T203M 0.49 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 8 27278210 27278210 C T PTK2B Silent p.F140F 0.30 TCGA-EE-A3JI-06 8 27320720 27320720 C T CHRNA2 Missense_Mutation p.E414K 0.28 tolerated(0.56) benign(0.011) TCGA-EE-A3JI-06 8 27362507 27362507 G T EPHX2 Silent p.L127L 0.46 TCGA-EE-A3JI-06 8 2855666 2855666 G A CSMD1 Silent p.F2748F 0.35 TCGA-EE-A3JI-06 8 3216800 3216800 G A CSMD1 Missense_Mutation p.H1060Y 0.40 benign(0.002) TCGA-EE-A3JI-06 8 35631958 35631958 G A UNC5D Missense_Mutation p.D874N 0.51 deleterious(0) possibly_damaging(0.901) TCGA-EE-A3JI-06 8 38947606 38947606 C T ADAM9 Silent p.F703F 0.28 TCGA-EE-A3JI-06 8 41577211 41577211 C T ANK1 Missense_Mutation p.D392N 0.54 deleterious(0) possibly_damaging(0.894) TCGA-EE-A3JI-06 8 42037793 42037793 C T PLAT Missense_Mutation p.E397K 0.26 tolerated(0.58) benign(0.008) TCGA-EE-A3JI-06 8 42857277 42857277 G A HOOK3 Missense_Mutation p.E550K 0.22 deleterious(0.04) probably_damaging(0.995) TCGA-EE-A3JI-06 8 48801704 48801704 A T PRKDC Missense_Mutation p.F1383Y 0.61 probably_damaging(1) TCGA-EE-A3JI-06 8 55542902 55542902 G A RP1 Missense_Mutation p.E2154K 0.48 tolerated(0.23) benign(0) TCGA-EE-A3JI-06 8 61748751 61748751 C T CHD7 Missense_Mutation p.P1300S 0.33 probably_damaging(0.997) TCGA-EE-A3JI-06 8 6302456 6302456 C T MCPH1 Missense_Mutation p.L405F 0.64 tolerated(0.05) possibly_damaging(0.718) TCGA-EE-A3JI-06 8 7320368 7320368 G A SPAG11B Silent p.A25A 0.22 TCGA-EE-A3JI-06 8 81582746 81582746 G A ZNF704 Silent p.I217I 0.56 TCGA-EE-A3JI-06 8 87162404 87162404 G A ATP6V0D2 Missense_Mutation p.E235K 0.26 tolerated(0.09) benign(0.096) TCGA-EE-A3JI-06 8 88885234 88885234 C G DCAF4L2 Silent p.V322V 0.50 TCGA-EE-A3JI-06 8 92052877 92052877 G C TMEM55A Missense_Mutation p.P34R 0.15 deleterious(0.04) benign(0.038) TCGA-EE-A3JI-06 8 95504028 95504028 G A KIAA1429 Missense_Mutation p.R1640C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 8 95524312 95524312 G A KIAA1429 Silent p.I919I 0.16 TCGA-EE-A3JI-06 9 100961584 100961584 G A TBC1D2 3'UTR 0.75 TCGA-EE-A3JI-06 9 101594224 101594224 C T GALNT12 Missense_Mutation p.P301L 0.87 tolerated(0.05) possibly_damaging(0.61) TCGA-EE-A3JI-06 9 107267485 107267485 C T OR13F1 Silent p.F314F 0.88 TCGA-EE-A3JI-06 9 111617184 111617185 CA - ACTL7B Frame_Shift_Del p.C342Wfs*33 0.25 TCGA-EE-A3JI-06 9 113170717 113170717 G A SVEP1 Missense_Mutation p.S2388F 0.81 possibly_damaging(0.739) TCGA-EE-A3JI-06 9 118949681 118949681 G A PAPPA Missense_Mutation p.E222K 0.32 tolerated(0.12) benign(0.063) TCGA-EE-A3JI-06 9 119065134 119065134 G A PAPPA Missense_Mutation p.G1018R 0.79 deleterious(0) probably_damaging(0.953) TCGA-EE-A3JI-06 9 119976887 119976887 G A ASTN2 Silent p.I255I 0.88 TCGA-EE-A3JI-06 9 122075565 122075565 G A BRINP1 Silent p.S23S 0.76 TCGA-EE-A3JI-06 9 123910972 123910972 C T CNTRL Missense_Mutation p.A1161V 0.90 benign(0.003) TCGA-EE-A3JI-06 9 125424116 125424116 G A OR1L1 Missense_Mutation p.G41E 0.91 deleterious(0) probably_damaging(0.993) TCGA-EE-A3JI-06 9 130485509 130485509 G A TTC16 Missense_Mutation p.D257N 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-EE-A3JI-06 9 135534100 135534100 G A DDX31 Silent p.I287I 0.86 TCGA-EE-A3JI-06 9 136501805 136501805 G A DBH Nonsense_Mutation p.W104* 0.78 TCGA-EE-A3JI-06 9 137622308 137622308 C T COL5A1 Missense_Mutation p.S384F 0.83 possibly_damaging(0.795) TCGA-EE-A3JI-06 9 137653787 137653787 C T COL5A1 Missense_Mutation p.S651F 0.34 probably_damaging(0.974) TCGA-EE-A3JI-06 9 140058343 140058343 G A GRIN1 Missense_Mutation p.R880Q 0.85 deleterious(0.03) probably_damaging(1) TCGA-EE-A3JI-06 9 140058344 140058344 G A GRIN1 Silent p.R880R 0.85 TCGA-EE-A3JI-06 9 140174065 140174065 G A TOR4A Silent p.T308T 0.35 TCGA-EE-A3JI-06 9 14824048 14824048 G A FREM1 Missense_Mutation p.A715V 0.93 tolerated(0.33) benign(0.014) TCGA-EE-A3JI-06 9 18504864 18504864 G A ADAMTSL1 Missense_Mutation p.G34D 0.83 tolerated(0.11) benign(0.021) TCGA-EE-A3JI-06 9 21217200 21217200 C T IFNA16 Silent p.R35R 0.76 TCGA-EE-A3JI-06 9 33366735 33366736 AG - NFX1 Frame_Shift_Del p.S1050* 0.23 TCGA-EE-A3JI-06 9 33466067 33466067 A G NOL6 Splice_Site p.X788_splice 0.86 TCGA-EE-A3JI-06 9 34241423 34241423 C T UBAP1 Missense_Mutation p.R198W 0.90 deleterious(0.03) benign(0.016) TCGA-EE-A3JI-06 9 36100427 36100427 C T RECK Silent p.I395I 0.68 TCGA-EE-A3JI-06 9 5832940 5832940 C T ERMP1 Missense_Mutation p.E30K 0.45 tolerated_low_confidence(0.38) possibly_damaging(0.636) TCGA-EE-A3JI-06 9 74971949 74971949 C G ZFAND5 Missense_Mutation p.V131L 0.10 tolerated(0.98) benign(0.001) TCGA-EE-A3JI-06 9 79321135 79321135 G A PRUNE2 Missense_Mutation p.P2019S 0.30 tolerated(0.25) benign(0.035) TCGA-EE-A3JI-06 9 87342598 87342598 C T NTRK2 Missense_Mutation p.P295S 0.76 tolerated(0.16) possibly_damaging(0.841) TCGA-EE-A3JI-06 9 91262385 91262385 C T RP13-60M5.2 RNA 0.92 TCGA-EE-A3JI-06 X 101395737 101395737 C T TCEAL6 3'UTR 0.53 TCGA-EE-A3JI-06 X 102864560 102864560 G A TCEAL3 Missense_Mutation p.G190S 0.05 tolerated(0.43) benign(0.129) TCGA-EE-A3JI-06 X 104512186 104512186 G A IL1RAPL2 Missense_Mutation p.G220E 0.95 deleterious(0.05) benign(0.326) TCGA-EE-A3JI-06 X 112022406 112022406 C T AMOT Silent p.A992A 0.92 TCGA-EE-A3JI-06 X 117714068 117714068 G A DOCK11 Silent p.Q507Q 0.84 TCGA-EE-A3JI-06 X 117892165 117892165 A G IL13RA1 Silent p.K212K 0.18 TCGA-EE-A3JI-06 X 122538687 122538687 C T GRIA3 Silent p.I474I 0.92 TCGA-EE-A3JI-06 X 129518896 129518896 G A GPR119 Missense_Mutation p.P176S 0.93 deleterious(0) probably_damaging(0.999) TCGA-EE-A3JI-06 X 130678703 130678703 G A OR13H1 Missense_Mutation p.R219Q 0.92 tolerated(0.23) benign(0.081) TCGA-EE-A3JI-06 X 135431695 135431695 G A GPR112 Missense_Mutation p.G1944R 0.92 tolerated(0.11) benign(0.044) TCGA-EE-A3JI-06 X 135764126 135764126 C T ARHGEF6 Missense_Mutation p.G494E 0.43 deleterious(0) possibly_damaging(0.865) TCGA-EE-A3JI-06 X 138644168 138644168 G A F9 Missense_Mutation p.G442R 0.89 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 X 142605181 142605181 C T SPANXN3 Silent p.T13T 0.89 TCGA-EE-A3JI-06 X 151336913 151336913 G T GABRA3 Silent p.P422P 0.07 TCGA-EE-A3JI-06 X 151514067 151514067 C T GABRA3 Missense_Mutation p.R83Q 0.84 deleterious(0) probably_damaging(0.941) TCGA-EE-A3JI-06 X 153035694 153035694 C T PLXNB3 Missense_Mutation p.P616S 0.92 tolerated(0.13) benign(0.05) TCGA-EE-A3JI-06 X 153695452 153695452 C T PLXNA3 Missense_Mutation p.P1054S 0.87 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 X 153695453 153695453 C T PLXNA3 Missense_Mutation p.P1054L 0.87 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 X 154088746 154088746 G A F8 Silent p.G2287G 0.90 TCGA-EE-A3JI-06 X 154185346 154185346 C G F8 Silent p.R546R 0.89 TCGA-EE-A3JI-06 X 18343095 18343095 C T SCML2 Missense_Mutation p.D32N 0.95 tolerated(0.56) benign(0.001) TCGA-EE-A3JI-06 X 23899059 23899059 C T APOO Missense_Mutation p.R7K 0.85 tolerated(0.96) benign(0.005) TCGA-EE-A3JI-06 X 34148365 34148365 C T FAM47A Silent p.R677R 0.94 TCGA-EE-A3JI-06 X 37913579 37913579 G T SYTL5 Missense_Mutation p.G78V 0.94 deleterious(0) probably_damaging(1) TCGA-EE-A3JI-06 X 38420808 38420808 G A TSPAN7 Silent p.S3S 0.88 TCGA-EE-A3JI-06 X 49087451 49087451 C T CACNA1F Missense_Mutation p.E128K 0.93 deleterious(0) probably_damaging(0.973) TCGA-EE-A3JI-06 X 51150929 51150929 C T CXorf67 Missense_Mutation p.S354L 0.91 deleterious(0.05) benign(0.139) TCGA-EE-A3JI-06 X 53573412 53573412 G A HUWE1 Missense_Mutation p.L3634F 0.80 unknown(0) TCGA-EE-A3JI-06 X 69455944 69455944 G A AWAT1 Silent p.R70R 0.89 TCGA-EE-A3JI-06 X 73070984 73070984 C T XIST RNA 0.93 TCGA-EE-A3JI-06 X 73524113 73524113 G A ZCCHC13 Silent p.K4K 0.90 TCGA-EE-A3JI-06 X 73961642 73961642 C T KIAA2022 Missense_Mutation p.G917E 0.87 tolerated(0.67) benign(0.003) TCGA-EE-A3JI-06 X 76937974 76937974 G A ATRX Missense_Mutation p.S925F 0.83 benign(0.063) TCGA-EE-A3JI-06 X 77224716 77224716 G T PGAM4 Silent p.R140R 0.81 TCGA-EE-A3JI-06 X 79945341 79945341 G A BRWD3 Nonsense_Mutation p.Q1245* 1.00 TCGA-EE-A3JI-06 X 84520260 84520260 C T ZNF711 Silent p.I305I 0.94 TCGA-EE-A3JI-06 X 84562262 84562262 C T POF1B Missense_Mutation p.M357I 1.00 tolerated(0.7) benign(0) TCGA-ER-A193-06 10 100183371 100183371 G A HPS1 Silent p.I529I 0.50 TCGA-ER-A193-06 10 101715817 101715817 G A DNMBP Nonsense_Mutation p.Q472* 0.42 TCGA-ER-A193-06 10 102986916 102986916 G A LBX1 3'UTR 0.48 TCGA-ER-A193-06 10 104859732 104859732 C T NT5C2 Missense_Mutation p.R195Q 0.44 tolerated(0.1) benign(0.012) TCGA-ER-A193-06 10 105331498 105331498 T C NEURL1 Missense_Mutation p.F190L 0.42 deleterious(0.01) possibly_damaging(0.719) TCGA-ER-A193-06 10 105361418 105361418 G A SH3PXD2A 3'UTR 0.46 TCGA-ER-A193-06 10 105752748 105752748 A - SLK Frame_Shift_Del p.E124Gfs*4 0.31 TCGA-ER-A193-06 10 105819447 105819447 C T COL17A1 Missense_Mutation p.E391K 0.31 unknown(0) TCGA-ER-A193-06 10 105920862 105920862 C T WDR96 Missense_Mutation p.R1158K 0.59 tolerated(0.95) benign(0.005) TCGA-ER-A193-06 10 106130806 106130806 G A CCDC147 Missense_Mutation p.E362K 0.37 deleterious(0) probably_damaging(0.967) TCGA-ER-A193-06 10 107022146 107022146 G A SORCS3 Missense_Mutation p.M1167I 0.39 deleterious(0) benign(0.313) TCGA-ER-A193-06 10 114164293 114164293 G A ACSL5 Missense_Mutation p.R153K 0.38 deleterious(0.02) possibly_damaging(0.88) TCGA-ER-A193-06 10 115391667 115391667 C T NRAP Silent p.L563L 0.48 TCGA-ER-A193-06 10 116602693 116602693 A T FAM160B1 Missense_Mutation p.N175I 0.53 tolerated(0.2) benign(0.026) TCGA-ER-A193-06 10 118314748 118314748 C T PNLIP Silent p.P210P 0.22 TCGA-ER-A193-06 10 12110999 12110999 C T DHTKD1 5'UTR 0.28 TCGA-ER-A193-06 10 12155038 12155038 C T DHTKD1 Missense_Mutation p.S765F 0.32 deleterious(0) probably_damaging(0.918) TCGA-ER-A193-06 10 124377568 124377568 G A DMBT1 Missense_Mutation p.G1514R 0.45 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 10 13240756 13240756 A T MCM10 Missense_Mutation p.E730D 0.29 deleterious(0) benign(0.182) TCGA-ER-A193-06 10 13380732 13380732 G A SEPHS1 Silent p.Y90Y 0.25 TCGA-ER-A193-06 10 135182473 135182473 C T ECHS1 Silent p.E156E 0.44 TCGA-ER-A193-06 10 14939205 14939205 G A SUV39H2 Missense_Mutation p.G180R 0.35 deleterious(0) benign(0.036) TCGA-ER-A193-06 10 15254982 15254982 C T FAM171A1 Missense_Mutation p.G869R 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-ER-A193-06 10 16526508 16526508 C T PTER Missense_Mutation p.P42L 0.20 tolerated(0.14) benign(0.022) TCGA-ER-A193-06 10 16932473 16932473 C T CUBN Silent p.G2884G 0.28 TCGA-ER-A193-06 10 16979614 16979614 C T CUBN Missense_Mutation p.G1968D 0.26 tolerated(0.05) benign(0.058) TCGA-ER-A193-06 10 17156031 17156031 G A CUBN Missense_Mutation p.P293L 0.38 deleterious(0) possibly_damaging(0.907) TCGA-ER-A193-06 10 21120197 21120197 C T NEBL Silent p.G533G 0.28 TCGA-ER-A193-06 10 25226281 25226281 G A PRTFDC1 Silent p.A57A 0.20 TCGA-ER-A193-06 10 25701188 25701188 C T GPR158 Missense_Mutation p.P374L 0.26 tolerated(0.21) benign(0.002) TCGA-ER-A193-06 10 26462604 26462604 G A MYO3A Silent p.V1137V 0.14 TCGA-ER-A193-06 10 27537777 27537777 C T RP11-85G18.6 Intron 0.29 TCGA-ER-A193-06 10 27687360 27687360 G A PTCHD3 Missense_Mutation p.P723S 0.37 tolerated(0.55) benign(0.018) TCGA-ER-A193-06 10 28229547 28229547 G A ARMC4 Missense_Mutation p.S644F 0.14 deleterious(0.05) possibly_damaging(0.701) TCGA-ER-A193-06 10 28270487 28270487 C G ARMC4 Missense_Mutation p.V282L 0.25 tolerated(0.46) benign(0.001) TCGA-ER-A193-06 10 28348640 28348640 C T MPP7 Missense_Mutation p.D413N 0.21 tolerated(0.2) probably_damaging(0.955) TCGA-ER-A193-06 10 30315425 30315425 G A KIAA1462 Missense_Mutation p.H1218Y 0.32 deleterious(0) probably_damaging(0.975) TCGA-ER-A193-06 10 30317025 30317025 G A KIAA1462 Silent p.H684H 0.31 TCGA-ER-A193-06 10 33475384 33475384 C T NRP1 Missense_Mutation p.E699K 0.28 tolerated(0.85) possibly_damaging(0.557) TCGA-ER-A193-06 10 35437404 35437404 C T CREM Silent p.I51I 0.30 TCGA-ER-A193-06 10 430065 430065 G A DIP2C Missense_Mutation p.S593L 0.32 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 10 43871008 43871008 C T FXYD4 Silent p.I53I 0.41 TCGA-ER-A193-06 10 45479559 45479559 C T RASSF4 Missense_Mutation p.S124L 0.33 tolerated(0.2) benign(0.032) TCGA-ER-A193-06 10 46961840 46961840 C T SYT15 3'Flank 0.13 TCGA-ER-A193-06 10 46999848 46999848 C G GPRIN2 Missense_Mutation p.A323G 0.22 tolerated(0.1) benign(0.018) TCGA-ER-A193-06 10 48390440 48390440 C T RBP3 Missense_Mutation p.M146I 0.50 deleterious(0) benign(0.02) TCGA-ER-A193-06 10 486818 486818 G A DIP2C Silent p.T129T 0.29 TCGA-ER-A193-06 10 486819 486819 G A DIP2C Missense_Mutation p.T129I 0.28 deleterious(0.04) possibly_damaging(0.72) TCGA-ER-A193-06 10 49667782 49667782 G A ARHGAP22 Silent p.L218L 0.46 TCGA-ER-A193-06 10 50532237 50532237 G A C10orf71 Silent p.E549E 0.38 TCGA-ER-A193-06 10 50944403 50944403 C T OGDHL Silent p.Q918Q 0.39 TCGA-ER-A193-06 10 51465424 51465424 C T AGAP7 Missense_Mutation p.M344I 0.48 tolerated(0.22) benign(0.026) TCGA-ER-A193-06 10 55582354 55582354 G A PCDH15 Missense_Mutation p.S1713L 0.36 tolerated_low_confidence(0.2) benign(0.001) TCGA-ER-A193-06 10 5567446 5567446 G A CALML3 Missense_Mutation p.G133E 0.20 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-ER-A193-06 10 55698675 55698675 C T PCDH15 Silent p.V1091V 0.50 TCGA-ER-A193-06 10 55912930 55912930 C T PCDH15 Missense_Mutation p.E572K 0.40 tolerated(0.54) benign(0.022) TCGA-ER-A193-06 10 60123403 60123403 T C UBE2D1 Missense_Mutation p.L52P 0.53 deleterious_low_confidence(0.01) benign(0.228) TCGA-ER-A193-06 10 61413644 61413644 G A SLC16A9 Silent p.I380I 0.50 TCGA-ER-A193-06 10 61833102 61833102 C T ANK3 Missense_Mutation p.E2513K 0.41 probably_damaging(0.956) TCGA-ER-A193-06 10 69926302 69926302 G A MYPN Missense_Mutation p.V618M 0.46 tolerated(0.23) benign(0.229) TCGA-ER-A193-06 10 71874039 71874039 G A AIFM2 Silent p.G339G 0.56 TCGA-ER-A193-06 10 75238270 75238270 T A PPP3CB Missense_Mutation p.Y133F 0.33 deleterious(0.05) probably_damaging(0.955) TCGA-ER-A193-06 10 75399722 75399722 C T MYOZ1 Silent p.L18L 0.44 TCGA-ER-A193-06 10 75676277 75676277 C T PLAU Missense_Mutation p.P417L 0.24 tolerated(0.12) possibly_damaging(0.662) TCGA-ER-A193-06 10 75867093 75867093 C T VCL Missense_Mutation p.P847L 0.32 tolerated(0.07) probably_damaging(1) TCGA-ER-A193-06 10 7772068 7772068 G A ITIH2 Missense_Mutation p.G478E 0.30 tolerated(1) probably_damaging(0.987) TCGA-ER-A193-06 10 7841754 7841754 C A ATP5C1 Missense_Mutation p.L150M 0.32 deleterious(0.04) benign(0.294) TCGA-ER-A193-06 10 81372115 81372115 G A SFTPA1 Missense_Mutation p.G89R 0.43 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 10 82187231 82187231 C T FAM213A Silent p.F185F 0.38 TCGA-ER-A193-06 10 87966200 87966200 G A GRID1 Silent p.V147V 0.51 TCGA-ER-A193-06 10 88683459 88683459 C T BMPR1A Nonsense_Mutation p.Q528* 0.39 TCGA-ER-A193-06 10 90074264 90074264 G A RNLS Nonsense_Mutation p.Q279* 0.51 TCGA-ER-A193-06 10 90497476 90497476 C T LIPK Missense_Mutation p.R252C 0.36 deleterious(0.02) possibly_damaging(0.773) TCGA-ER-A193-06 10 95517914 95517914 A T LGI1 Nonsense_Mutation p.R5* 0.24 TCGA-ER-A193-06 10 95790885 95790885 G A PLCE1 Missense_Mutation p.E28K 0.43 deleterious_low_confidence(0.01) benign(0.169) TCGA-ER-A193-06 10 96073108 96073108 G A PLCE1 Missense_Mutation p.G2034E 0.38 tolerated(1) benign(0.003) TCGA-ER-A193-06 10 96081674 96081674 A T PLCE1 Missense_Mutation p.N2120I 0.40 tolerated(0.17) benign(0.004) TCGA-ER-A193-06 10 96081675 96081675 C T PLCE1 Silent p.N2120N 0.45 TCGA-ER-A193-06 10 96454799 96454799 G A CYP2C18 Missense_Mutation p.E203K 0.29 deleterious(0.05) benign(0.153) TCGA-ER-A193-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.52 tolerated(0.19) benign(0.064) TCGA-ER-A193-06 10 96818118 96818118 C T CYP2C8 Missense_Mutation p.D265N 0.38 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 10 98806450 98806450 C T SLIT1 Missense_Mutation p.R605Q 0.33 tolerated(0.5) probably_damaging(0.936) TCGA-ER-A193-06 11 100126491 100126491 G A CNTN5 Splice_Site p.X669_splice 0.20 TCGA-ER-A193-06 11 100126511 100126511 G A CNTN5 Silent p.G675G 0.25 TCGA-ER-A193-06 11 1006571 1006571 C T AP2A2 Silent p.F750F 0.23 TCGA-ER-A193-06 11 1016670 1016670 C T MUC6 Missense_Mutation p.G2044D 0.05 probably_damaging(0.99) TCGA-ER-A193-06 11 101857743 101857743 C T KIAA1377 Missense_Mutation p.S1072F 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 11 1019291 1019291 C T MUC6 Silent p.G1338G 0.31 TCGA-ER-A193-06 11 101953941 101953941 G A C11orf70 3'UTR 0.33 TCGA-ER-A193-06 11 102567566 102567566 C T MMP27 Missense_Mutation p.G207E 0.42 deleterious(0.01) probably_damaging(0.979) TCGA-ER-A193-06 11 102573832 102573832 G A MMP27 Missense_Mutation p.P120L 0.23 tolerated(0.09) probably_damaging(1) TCGA-ER-A193-06 11 102587050 102587050 T C MMP8 Missense_Mutation p.I295M 0.16 tolerated(0.16) possibly_damaging(0.491) TCGA-ER-A193-06 11 102592240 102592240 G A MMP8 Missense_Mutation p.P172S 0.16 tolerated(0.11) probably_damaging(0.965) TCGA-ER-A193-06 11 102650443 102650443 C A MMP10 Missense_Mutation p.D47Y 0.23 deleterious(0.04) benign(0.114) TCGA-ER-A193-06 11 102667484 102667484 C T MMP1 Missense_Mutation p.G179E 0.34 tolerated(0.05) benign(0.061) TCGA-ER-A193-06 11 104874035 104874035 T A CASP5 Missense_Mutation p.E183V 0.27 tolerated(0.07) benign(0.113) TCGA-ER-A193-06 11 10506366 10506366 G A AMPD3 Splice_Site p.X206_splice 0.27 TCGA-ER-A193-06 11 106810191 106810191 C T GUCY1A2 Missense_Mutation p.D401N 0.19 tolerated(0.42) benign(0.009) TCGA-ER-A193-06 11 108409889 108409889 C T EXPH5 Missense_Mutation p.R102K 0.36 tolerated(0.05) benign(0.067) TCGA-ER-A193-06 11 112064319 112064319 G A BCO2 Missense_Mutation p.R139Q 0.17 deleterious(0.03) possibly_damaging(0.899) TCGA-ER-A193-06 11 11374277 11374277 G C CSNK2A3 Missense_Mutation p.D130E 0.35 tolerated(0.12) benign(0.44) TCGA-ER-A193-06 11 11374442 11374442 C T CSNK2A3 Silent p.K75K 0.44 TCGA-ER-A193-06 11 113775654 113775654 G A HTR3B 5'UTR 0.38 TCGA-ER-A193-06 11 113803129 113803129 C T HTR3B Missense_Mutation p.P163S 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 11 114393812 114393812 C T NXPE1 Silent p.K157K 0.20 TCGA-ER-A193-06 11 116701499 116701499 G A APOC3 Silent p.E22E 0.33 TCGA-ER-A193-06 11 116827673 116827673 C T SIK3 Silent p.R69R 0.20 TCGA-ER-A193-06 11 117982500 117982500 G A TMPRSS4 Missense_Mutation p.E210K 0.24 tolerated(0.67) benign(0.022) TCGA-ER-A193-06 11 117988719 117988719 C T TMPRSS4 3'UTR 0.42 TCGA-ER-A193-06 11 118359392 118359392 C T KMT2A Missense_Mutation p.P1466S 0.48 probably_damaging(0.998) TCGA-ER-A193-06 11 118366464 118366464 T A KMT2A Missense_Mutation p.Y1805N 0.29 probably_damaging(0.997) TCGA-ER-A193-06 11 118769800 118769800 G A BCL9L Missense_Mutation p.P1275L 0.26 benign(0.304) TCGA-ER-A193-06 11 118770888 118770888 G A BCL9L Silent p.G1048G 0.41 TCGA-ER-A193-06 11 118770898 118770898 G A BCL9L Missense_Mutation p.P1045L 0.36 benign(0.001) TCGA-ER-A193-06 11 120989023 120989023 C T TECTA Missense_Mutation p.L267F 0.23 tolerated(0.08) benign(0.008) TCGA-ER-A193-06 11 121028547 121028547 C T TECTA Intron 0.15 TCGA-ER-A193-06 11 122930831 122930831 T G HSPA8 Missense_Mutation p.D186A 0.37 deleterious_low_confidence(0) benign(0.426) TCGA-ER-A193-06 11 123811214 123811214 C T OR4D5 Silent p.A297A 0.36 TCGA-ER-A193-06 11 123909443 123909443 C T OR10G7 Missense_Mutation p.R89K 0.10 tolerated(0.78) benign(0.002) TCGA-ER-A193-06 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.32 tolerated(0.19) benign(0.224) TCGA-ER-A193-06 11 124857470 124857470 C T CCDC15 Silent p.L450L 0.30 TCGA-ER-A193-06 11 125478009 125478009 C T STT3A Silent p.V262V 0.30 TCGA-ER-A193-06 11 126432784 126432784 A T KIRREL3 Missense_Mutation p.C27S 0.24 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-ER-A193-06 11 1271167 1271167 C T MUC5B Missense_Mutation p.P4353S 0.27 benign(0.001) TCGA-ER-A193-06 11 128677124 128677124 G A FLI1 Silent p.R257R 0.33 TCGA-ER-A193-06 11 128709855 128709855 G A KCNJ1 Missense_Mutation p.P114L 0.28 tolerated(0.05) benign(0.091) TCGA-ER-A193-06 11 128710115 128710115 C T KCNJ1 Nonsense_Mutation p.W27* 0.21 TCGA-ER-A193-06 11 133800931 133800931 G A IGSF9B Silent p.V489V 0.16 TCGA-ER-A193-06 11 133801430 133801430 T A IGSF9B Missense_Mutation p.E429V 0.22 tolerated(0.1) benign(0.153) TCGA-ER-A193-06 11 134214955 134214955 C T GLB1L2 Silent p.I127I 0.42 TCGA-ER-A193-06 11 134257550 134257550 G A B3GAT1 Missense_Mutation p.P2S 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.664) TCGA-ER-A193-06 11 14157038 14157038 G A RNA5SP332 3'Flank 0.36 TCGA-ER-A193-06 11 15133982 15133982 G A INSC 5'UTR 0.27 TCGA-ER-A193-06 11 1718666 1718666 G A KRTAP5-6 Missense_Mutation p.G64E 0.33 tolerated_low_confidence(0.15) unknown(0) TCGA-ER-A193-06 11 17531214 17531214 G A USH1C Missense_Mutation p.P568S 0.29 tolerated_low_confidence(0.16) benign(0.003) TCGA-ER-A193-06 11 17547960 17547960 C T USH1C Missense_Mutation p.G203E 0.40 deleterious(0.03) benign(0.101) TCGA-ER-A193-06 11 18159064 18159064 C T MRGPRX3 Silent p.P105P 0.24 TCGA-ER-A193-06 11 18194934 18194934 G A MRGPRX4 Missense_Mutation p.G44E 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-ER-A193-06 11 18424479 18424479 C T LDHA Missense_Mutation p.R200C 0.29 tolerated(0.06) benign(0.398) TCGA-ER-A193-06 11 18636920 18636920 G A SPTY2D1 Missense_Mutation p.R301C 0.24 tolerated(0.09) benign(0.066) TCGA-ER-A193-06 11 18751000 18751000 C T PTPN5 Missense_Mutation p.R535K 0.38 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 11 18955550 18955550 G A MRGPRX1 Missense_Mutation p.S261F 0.25 deleterious(0) possibly_damaging(0.75) TCGA-ER-A193-06 11 18955718 18955718 C T MRGPRX1 Missense_Mutation p.G205E 0.24 deleterious(0) possibly_damaging(0.855) TCGA-ER-A193-06 11 20623094 20623094 G A SLC6A5 Silent p.L141L 0.34 TCGA-ER-A193-06 11 20676294 20676294 G A SLC6A5 Nonsense_Mutation p.W758* 0.34 TCGA-ER-A193-06 11 20939733 20939733 C T NELL1 Silent p.I203I 0.29 TCGA-ER-A193-06 11 2189797 2189797 G A TH Silent p.R168R 0.25 TCGA-ER-A193-06 11 22399051 22399051 G A SLC17A6 Nonsense_Mutation p.W505* 0.37 TCGA-ER-A193-06 11 24750779 24750779 C T LUZP2 Missense_Mutation p.R43C 0.38 deleterious(0) possibly_damaging(0.742) TCGA-ER-A193-06 11 26655777 26655777 G A ANO3 Missense_Mutation p.E634K 0.16 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 11 31115594 31115594 T G DCDC1 Intron 0.30 TCGA-ER-A193-06 11 3121463 3121463 C T OSBPL5 Missense_Mutation p.D516N 0.33 tolerated(0.05) probably_damaging(0.948) TCGA-ER-A193-06 11 32636355 32636355 C T CCDC73 Silent p.S503S 0.25 TCGA-ER-A193-06 11 33628245 33628245 C T KIAA1549L Silent p.A1349A 0.29 TCGA-ER-A193-06 11 34158550 34158550 C T NAT10 Missense_Mutation p.P730S 0.25 deleterious(0.03) possibly_damaging(0.817) TCGA-ER-A193-06 11 34502374 34502374 C T ELF5 Missense_Mutation p.G216R 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 11 36595229 36595229 G A RAG1 Silent p.R125R 0.35 TCGA-ER-A193-06 11 3660014 3660014 C T ART5 Missense_Mutation p.G277E 0.40 deleterious(0.01) benign(0.001) TCGA-ER-A193-06 11 40136827 40136827 C T LRRC4C Missense_Mutation p.R339K 0.28 tolerated(0.42) benign(0.001) TCGA-ER-A193-06 11 43852642 43852642 C T HSD17B12 Intron 0.32 TCGA-ER-A193-06 11 4388826 4388826 C T OR52B4 Missense_Mutation p.D234N 0.25 tolerated(0.05) benign(0.17) TCGA-ER-A193-06 11 4566547 4566547 G C OR52M1 Missense_Mutation p.G43R 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 11 4615303 4615303 C T OR52I1 Missense_Mutation p.T12I 0.25 tolerated(0.17) benign(0.006) TCGA-ER-A193-06 11 4615304 4615304 C T OR52I1 Silent p.T12T 0.25 TCGA-ER-A193-06 11 46567280 46567280 G A AMBRA1 Missense_Mutation p.S142F 0.34 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-ER-A193-06 11 46918471 46918471 C T LRP4 Missense_Mutation p.G291R 0.26 deleterious(0) probably_damaging(0.964) TCGA-ER-A193-06 11 4703752 4703752 T C OR51E2 Missense_Mutation p.M64V 0.28 deleterious(0.01) probably_damaging(0.958) TCGA-ER-A193-06 11 47189487 47189487 A T ARFGAP2 Missense_Mutation p.I393N 0.44 tolerated(0.11) possibly_damaging(0.724) TCGA-ER-A193-06 11 47306552 47306552 C T MADD Missense_Mutation p.P740S 0.33 tolerated_low_confidence(0.12) benign(0.001) TCGA-ER-A193-06 11 47355234 47355234 G A MYBPC3 Missense_Mutation p.R1022C 0.35 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 11 47364271 47364271 G A MYBPC3 Silent p.T494T 0.37 TCGA-ER-A193-06 11 47653242 47653242 G A MTCH2 Missense_Mutation p.R131C 0.26 deleterious(0.01) benign(0.178) TCGA-ER-A193-06 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.37 deleterious(0.04) possibly_damaging(0.776) TCGA-ER-A193-06 11 48510356 48510356 G A OR4A47 Silent p.R4R 0.38 TCGA-ER-A193-06 11 4903321 4903321 C T OR51T1 Silent p.F91F 0.26 TCGA-ER-A193-06 11 49179553 49179553 C T FOLH1 Missense_Mutation p.E495K 0.31 deleterious(0.01) benign(0.187) TCGA-ER-A193-06 11 4929383 4929383 C T OR51A7 Missense_Mutation p.H262Y 0.32 deleterious(0) benign(0.094) TCGA-ER-A193-06 11 4936874 4936874 C T OR51G2 Missense_Mutation p.G7E 0.34 tolerated(0.82) unknown(0) TCGA-ER-A193-06 11 5013468 5013468 C T MMP26 Missense_Mutation p.P261L 0.25 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-ER-A193-06 11 51411590 51411590 G A OR4A5 Missense_Mutation p.T269I 0.28 deleterious_low_confidence(0.01) benign(0.25) TCGA-ER-A193-06 11 5322921 5322921 C T OR51B4 Missense_Mutation p.D86N 0.35 tolerated(1) benign(0.002) TCGA-ER-A193-06 11 5322940 5322940 G A OR51B4 Silent p.V79V 0.35 TCGA-ER-A193-06 11 5444265 5444265 G A OR51Q1 Missense_Mutation p.A279T 0.33 deleterious(0) probably_damaging(0.984) TCGA-ER-A193-06 11 55038490 55038490 C T TRIM48 3'UTR 0.33 TCGA-ER-A193-06 11 55110964 55110964 G A OR4A16 Missense_Mutation p.M96I 0.23 deleterious_low_confidence(0.02) benign(0.056) TCGA-ER-A193-06 11 5529451 5529451 C T UBQLN3 Silent p.S446S 0.27 TCGA-ER-A193-06 11 5529823 5529823 C T UBQLN3 Silent p.G322G 0.38 TCGA-ER-A193-06 11 55339824 55339824 C T OR4C16 Missense_Mutation p.S74F 0.35 deleterious(0) possibly_damaging(0.713) TCGA-ER-A193-06 11 55606440 55606440 G A OR5D16 Silent p.V71V 0.34 TCGA-ER-A193-06 11 55735856 55735856 C T OR10AG1 Missense_Mutation p.M28I 0.40 tolerated(1) benign(0) TCGA-ER-A193-06 11 55761688 55761688 C T OR5F1 Silent p.R138R 0.26 TCGA-ER-A193-06 11 55761689 55761689 C T OR5F1 Missense_Mutation p.R138K 0.26 tolerated(0.44) benign(0.015) TCGA-ER-A193-06 11 56143630 56143630 C T OR8U1 Silent p.F177F 0.10 TCGA-ER-A193-06 11 56409001 56409001 C T OR5AP2 Silent p.K305K 0.16 TCGA-ER-A193-06 11 56409093 56409093 C T OR5AP2 Missense_Mutation p.E275K 0.32 deleterious(0.02) benign(0.033) TCGA-ER-A193-06 11 56510580 56510580 G A OR9G4 Silent p.I236I 0.34 TCGA-ER-A193-06 11 56510823 56510823 G A OR9G4 Silent p.L155L 0.27 TCGA-ER-A193-06 11 56954888 56954888 C T LRRC55 Silent p.F320F 0.20 TCGA-ER-A193-06 11 57099700 57099700 G A SSRP1 Silent p.S309S 0.16 TCGA-ER-A193-06 11 57099701 57099701 G A SSRP1 Missense_Mutation p.S309F 0.16 deleterious(0) benign(0.197) TCGA-ER-A193-06 11 57252504 57252504 G - SLC43A1 3'UTR 0.27 TCGA-ER-A193-06 11 58126225 58126225 G A OR5B17 Silent p.A106A 0.38 TCGA-ER-A193-06 11 58170239 58170239 G A OR5B3 Missense_Mutation p.S215F 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A193-06 11 58170535 58170535 C T OR5B3 Missense_Mutation p.M116I 0.33 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-ER-A193-06 11 5841606 5841606 T A OR52N2 Missense_Mutation p.F14Y 0.42 deleterious(0.03) benign(0.12) TCGA-ER-A193-06 11 58601949 58601949 G A GLYATL2 Missense_Mutation p.P280S 0.30 tolerated(0.41) benign(0.053) TCGA-ER-A193-06 11 58722282 58722282 C T GLYATL1 Missense_Mutation p.R107C 0.18 deleterious(0.05) benign(0.002) TCGA-ER-A193-06 11 58723340 58723340 G A GLYATL1 Missense_Mutation p.R281Q 0.33 tolerated(0.3) benign(0.003) TCGA-ER-A193-06 11 59282987 59282987 C T OR4D9 Missense_Mutation p.S201L 0.17 deleterious(0.03) benign(0.367) TCGA-ER-A193-06 11 59283128 59283128 C T OR4D9 Missense_Mutation p.T248I 0.22 tolerated(0.1) benign(0.25) TCGA-ER-A193-06 11 59997402 59997402 T C MS4A4E Missense_Mutation p.K43E 0.35 tolerated_low_confidence(1) benign(0) TCGA-ER-A193-06 11 60468529 60468529 C T MS4A8 Silent p.L66L 0.37 TCGA-ER-A193-06 11 60468530 60468530 T C MS4A8 Missense_Mutation p.L66P 0.33 deleterious(0.02) probably_damaging(0.962) TCGA-ER-A193-06 11 60531206 60531206 G A MS4A15 5'UTR 0.33 TCGA-ER-A193-06 11 61254688 61254688 G A PPP1R32 Missense_Mutation p.R340Q 0.22 tolerated(0.15) benign(0.006) TCGA-ER-A193-06 11 61957733 61957733 G A SCGB1D1 5'UTR 0.36 TCGA-ER-A193-06 11 62554665 62554665 G A TAF6L Missense_Mutation p.S589N 0.27 tolerated_low_confidence(0.48) benign(0.001) TCGA-ER-A193-06 11 63283073 63283073 C T LGALS12 Missense_Mutation p.P252L 0.20 tolerated(0.07) benign(0.05) TCGA-ER-A193-06 11 63313695 63313695 G A RARRES3 Silent p.A154A 0.24 TCGA-ER-A193-06 11 63398562 63398562 G A ATL3 Missense_Mutation p.R497C 0.31 deleterious(0) possibly_damaging(0.667) TCGA-ER-A193-06 11 63884171 63884171 G A FLRT1 Silent p.R144R 0.11 TCGA-ER-A193-06 11 64112150 64112150 G A CCDC88B Missense_Mutation p.G713S 0.28 tolerated(0.13) benign(0.169) TCGA-ER-A193-06 11 64359000 64359000 C T SLC22A12 5'UTR 0.25 TCGA-ER-A193-06 11 64421181 64421181 G A NRXN2 Silent p.V801V 0.25 TCGA-ER-A193-06 11 64496379 64496379 C T RASGRP2 Missense_Mutation p.S576N 0.11 deleterious(0.04) possibly_damaging(0.852) TCGA-ER-A193-06 11 64677192 64677192 C A ATG2A Missense_Mutation p.V690F 0.31 tolerated(0.68) benign(0.035) TCGA-ER-A193-06 11 6477646 6477646 G A TRIM3 Missense_Mutation p.S437F 0.36 deleterious(0) probably_damaging(0.914) TCGA-ER-A193-06 11 64846868 64846868 G A CDCA5 Missense_Mutation p.P212L 0.21 tolerated_low_confidence(0.33) benign(0.013) TCGA-ER-A193-06 11 64846871 64846871 G A CDCA5 Missense_Mutation p.P211L 0.23 tolerated(0.64) benign(0.021) TCGA-ER-A193-06 11 64972273 64972273 C T CAPN1 Missense_Mutation p.R429C 0.15 deleterious(0.01) possibly_damaging(0.877) TCGA-ER-A193-06 11 65123717 65123717 C T TIGD3 Silent p.P146P 0.30 TCGA-ER-A193-06 11 65123718 65123718 C T TIGD3 Missense_Mutation p.P147S 0.31 tolerated(0.52) benign(0.003) TCGA-ER-A193-06 11 65273374 65273374 G A MALAT1 RNA 0.26 TCGA-ER-A193-06 11 65819851 65819851 C T SF3B2 5'UTR 0.10 TCGA-ER-A193-06 11 6589016 6589016 C T DNHD1 Missense_Mutation p.P4093S 0.25 probably_damaging(1) TCGA-ER-A193-06 11 66359372 66359372 G A CCDC87 Missense_Mutation p.P372L 0.19 tolerated(0.36) benign(0.002) TCGA-ER-A193-06 11 6790090 6790090 G A OR2AG2 Silent p.I33I 0.39 TCGA-ER-A193-06 11 68548126 68548126 G A CPT1A Silent p.I480I 0.33 TCGA-ER-A193-06 11 6898760 6898760 G A OR10A4 Silent p.R294R 0.28 TCGA-ER-A193-06 11 70336483 70336483 C T SHANK2 Missense_Mutation p.E818K 0.36 tolerated(0.06) benign(0.036) TCGA-ER-A193-06 11 7065201 7065201 C T NLRP14 Silent p.L648L 0.27 TCGA-ER-A193-06 11 71804553 71804553 G A LRTOMT 5'UTR 0.31 TCGA-ER-A193-06 11 71821066 71821066 C T LRTOMT 3'UTR 0.28 TCGA-ER-A193-06 11 71945395 71945395 C T INPPL1 Silent p.S761S 0.19 TCGA-ER-A193-06 11 71946225 71946225 C T INPPL1 Silent p.S827S 0.21 TCGA-ER-A193-06 11 72407631 72407631 G A ARAP1 Missense_Mutation p.R1079W 0.38 deleterious(0) possibly_damaging(0.832) TCGA-ER-A193-06 11 73064048 73064048 C T ARHGEF17 Silent p.L1148L 0.42 TCGA-ER-A193-06 11 73078666 73078666 C T ARHGEF17 Silent p.S2011S 0.38 TCGA-ER-A193-06 11 73620606 73620606 C T PAAF1 Missense_Mutation p.S232F 0.45 deleterious(0.01) possibly_damaging(0.58) TCGA-ER-A193-06 11 74424495 74424495 G A CHRDL2 Silent p.H75H 0.32 TCGA-ER-A193-06 11 75160033 75160033 C T GDPD5 Missense_Mutation p.G235R 0.49 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 11 75319327 75319327 G A MAP6 Missense_Mutation p.P316S 0.40 deleterious(0.05) probably_damaging(0.964) TCGA-ER-A193-06 11 75902750 75902750 G A WNT11 Nonsense_Mutation p.R250* 0.40 TCGA-ER-A193-06 11 77728170 77728170 G A KCTD14 Silent p.I79I 0.20 TCGA-ER-A193-06 11 78383099 78383099 C T TENM4 Nonsense_Mutation p.W1924* 0.50 TCGA-ER-A193-06 11 7960190 7960190 C T OR10A3 Missense_Mutation p.R293Q 0.24 deleterious(0) benign(0.087) TCGA-ER-A193-06 11 8132361 8132361 C T RIC3 Missense_Mutation p.E332K 0.32 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-ER-A193-06 11 82625826 82625826 C T C11orf82 Nonsense_Mutation p.Q16* 0.16 TCGA-ER-A193-06 11 82698549 82698549 C A RAB30 Intron 0.30 TCGA-ER-A193-06 11 8496233 8496233 C T STK33 Missense_Mutation p.D74N 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.478) TCGA-ER-A193-06 11 85437241 85437241 A TTT SYTL2 Frame_Shift_Ins p.L87Kfs*2 0.34 TCGA-ER-A193-06 11 86097144 86097144 C T CCDC81 Missense_Mutation p.T44I 0.30 tolerated(0.06) benign(0.008) TCGA-ER-A193-06 11 87029190 87029190 C T TMEM135 Silent p.F363F 0.20 TCGA-ER-A193-06 11 88781001 88781001 C T GRM5 Missense_Mutation p.E14K 0.34 tolerated(0.79) benign(0.021) TCGA-ER-A193-06 11 89017984 89017984 G A TYR Missense_Mutation p.V410I 0.23 tolerated(0.43) benign(0.098) TCGA-ER-A193-06 11 89017985 89017985 T A TYR Missense_Mutation p.V410D 0.27 tolerated(0.75) possibly_damaging(0.653) TCGA-ER-A193-06 11 89088167 89088167 C T NOX4 Missense_Mutation p.E394K 0.16 tolerated(0.07) benign(0.229) TCGA-ER-A193-06 11 92086953 92086953 G A FAT3 Missense_Mutation p.E559K 0.31 probably_damaging(0.999) TCGA-ER-A193-06 11 92257829 92257829 C T FAT3 Missense_Mutation p.R1108W 0.34 probably_damaging(0.997) TCGA-ER-A193-06 11 92534496 92534496 C T FAT3 Missense_Mutation p.R2773C 0.21 possibly_damaging(0.453) TCGA-ER-A193-06 11 93480597 93480597 T G C11orf54 Missense_Mutation p.L13R 0.12 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 11 94126696 94126696 G A GPR83 Missense_Mutation p.S201L 0.11 deleterious(0) probably_damaging(0.991) TCGA-ER-A193-06 11 94862153 94862153 C T ENDOD1 Missense_Mutation p.L305F 0.43 tolerated(0.27) possibly_damaging(0.878) TCGA-ER-A193-06 12 100774643 100774643 C T SLC17A8 Missense_Mutation p.S89F 0.50 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 12 101715375 101715375 C T UTP20 Silent p.A1003A 0.23 TCGA-ER-A193-06 12 103234185 103234185 G A PAH Silent p.S436S 0.42 TCGA-ER-A193-06 12 104341479 104341479 A G HSP90B1 3'UTR 0.16 TCGA-ER-A193-06 12 108145331 108145331 G A PRDM4 Silent p.V329V 0.56 TCGA-ER-A193-06 12 109494518 109494518 G A USP30 Missense_Mutation p.G39S 0.42 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 12 109719441 109719441 G A FOXN4 Silent p.S355S 0.27 TCGA-ER-A193-06 12 11061051 11061051 G A TAS2R13 Silent p.L283L 0.44 TCGA-ER-A193-06 12 110781220 110781220 C T ATP2A2 Silent p.F834F 0.44 TCGA-ER-A193-06 12 110784064 110784064 C T ATP2A2 Missense_Mutation p.S973F 0.43 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 12 11091096 11091096 G A TAS2R14 Silent p.F237F 0.47 TCGA-ER-A193-06 12 111785472 111785472 G A CUX2 Silent p.Q1268Q 0.40 TCGA-ER-A193-06 12 11244107 11244107 T C TAS2R43 Missense_Mutation p.Y241C 0.54 deleterious(0) probably_damaging(0.979) TCGA-ER-A193-06 12 11339534 11339534 C T TAS2R42 Missense_Mutation p.E4K 0.43 tolerated(0.15) benign(0.022) TCGA-ER-A193-06 12 11546609 11546609 G A PRB2 Missense_Mutation p.P135S 0.41 tolerated(0.76) unknown(0) TCGA-ER-A193-06 12 116429468 116429468 G A MED13L Silent p.P1097P 0.42 TCGA-ER-A193-06 12 117013751 117013751 C T MAP1LC3B2 Missense_Mutation p.P2S 0.42 tolerated(0.06) benign(0.003) TCGA-ER-A193-06 12 117703283 117703283 G A NOS1 Silent p.S658S 0.64 TCGA-ER-A193-06 12 117768658 117768658 C T NOS1 Missense_Mutation p.V73M 0.58 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-ER-A193-06 12 117768659 117768659 C T NOS1 Silent p.L72L 0.60 TCGA-ER-A193-06 12 118582456 118582456 C T PEBP1 Missense_Mutation p.L138F 0.38 deleterious(0.02) possibly_damaging(0.779) TCGA-ER-A193-06 12 119552115 119552115 C T SRRM4 Missense_Mutation p.P104L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-ER-A193-06 12 120580452 120580452 G A GCN1L1 Silent p.T1896T 0.31 TCGA-ER-A193-06 12 120580453 120580453 G A GCN1L1 Missense_Mutation p.T1896I 0.30 benign(0.282) TCGA-ER-A193-06 12 120585060 120585060 G A GCN1L1 Silent p.L1581L 0.54 TCGA-ER-A193-06 12 120784047 120784047 G A MSI1 Missense_Mutation p.P313L 0.23 deleterious(0) benign(0.03) TCGA-ER-A193-06 12 120966880 120966880 C T COQ5 Missense_Mutation p.R22Q 0.24 tolerated_low_confidence(0.21) benign(0.039) TCGA-ER-A193-06 12 121104769 121104769 C T CABP1 3'UTR 0.28 TCGA-ER-A193-06 12 123705965 123705965 G T MPHOSPH9 Missense_Mutation p.L124I 0.18 tolerated(0.09) benign(0.171) TCGA-ER-A193-06 12 124270434 124270434 G A DNAH10 Missense_Mutation p.E397K 0.23 possibly_damaging(0.752) TCGA-ER-A193-06 12 124298158 124298158 G A DNAH10 Missense_Mutation p.E1080K 0.26 benign(0.016) TCGA-ER-A193-06 12 124305258 124305258 G A DNAH10 Missense_Mutation p.E1260K 0.29 benign(0.363) TCGA-ER-A193-06 12 124315133 124315133 G A DNAH10 Missense_Mutation p.E1360K 0.30 possibly_damaging(0.752) TCGA-ER-A193-06 12 125397113 125397113 G A UBC Missense_Mutation p.T402I 0.31 deleterious(0) probably_damaging(0.991) TCGA-ER-A193-06 12 125570980 125570980 C T AACS Missense_Mutation p.R155W 0.40 deleterious(0) probably_damaging(0.978) TCGA-ER-A193-06 12 132626863 132626863 C T DDX51 Missense_Mutation p.G259S 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A193-06 12 133438075 133438075 G A CHFR Silent p.P255P 0.25 TCGA-ER-A193-06 12 133438076 133438076 G A CHFR Missense_Mutation p.P255L 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A193-06 12 13716487 13716487 C T GRIN2B Missense_Mutation p.V1229M 0.44 tolerated(0.18) possibly_damaging(0.708) TCGA-ER-A193-06 12 15134401 15134401 G A PDE6H Silent p.G81G 0.47 TCGA-ER-A193-06 12 18691095 18691095 G A PIK3C2G Missense_Mutation p.R1069Q 0.21 deleterious(0) probably_damaging(0.985) TCGA-ER-A193-06 12 18691147 18691147 G A PIK3C2G Silent p.G1086G 0.27 TCGA-ER-A193-06 12 18762521 18762521 G A PIK3C2G Silent p.E1339E 0.25 TCGA-ER-A193-06 12 18890373 18890373 T C PLCZ1 5'UTR 0.20 TCGA-ER-A193-06 12 20968622 20968622 C G LST3 5'UTR 0.21 TCGA-ER-A193-06 12 21358809 21358809 C T SLCO1B1 Missense_Mutation p.P447S 0.23 tolerated(0.18) benign(0.177) TCGA-ER-A193-06 12 21453318 21453318 C T SLCO1A2 Missense_Mutation p.E292K 0.31 tolerated(0.69) benign(0.005) TCGA-ER-A193-06 12 21954019 21954019 C T ABCC9 Missense_Mutation p.E1537K 0.26 tolerated(0.25) benign(0.003) TCGA-ER-A193-06 12 21962876 21962876 G A ABCC9 Missense_Mutation p.P1409S 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-ER-A193-06 12 22059214 22059214 G A ABCC9 Silent p.S488S 0.24 TCGA-ER-A193-06 12 25267768 25267768 G A CASC1 Missense_Mutation p.S478F 0.24 tolerated(0.64) benign(0.005) TCGA-ER-A193-06 12 25702317 25702317 C T IFLTD1 Missense_Mutation p.G85R 0.48 deleterious(0.02) probably_damaging(0.971) TCGA-ER-A193-06 12 2595388 2595388 G A CACNA1C Silent p.G292G 0.28 TCGA-ER-A193-06 12 26784916 26784916 G A ITPR2 Silent p.F939F 0.25 TCGA-ER-A193-06 12 27568836 27568836 C T ARNTL2 Missense_Mutation p.P541S 0.19 tolerated(0.26) benign(0.126) TCGA-ER-A193-06 12 27568837 27568837 C T ARNTL2 Missense_Mutation p.P541L 0.19 deleterious(0.02) possibly_damaging(0.77) TCGA-ER-A193-06 12 2797694 2797694 C T CACNA1C Missense_Mutation p.P2004S 0.37 deleterious_low_confidence(0.02) benign(0.352) TCGA-ER-A193-06 12 32945370 32945370 G A PKP2 Silent p.S878S 0.25 TCGA-ER-A193-06 12 40115044 40115044 G A C12orf40 Silent p.K650K 0.24 TCGA-ER-A193-06 12 43825296 43825296 G A ADAMTS20 Missense_Mutation p.L1034F 0.21 tolerated(0.14) benign(0.067) TCGA-ER-A193-06 12 44199710 44199710 A G TWF1 Intron 0.26 TCGA-ER-A193-06 12 46230562 46230562 C T ARID2 Missense_Mutation p.H271Y 0.23 tolerated(0.11) probably_damaging(0.961) TCGA-ER-A193-06 12 46592408 46592408 C T SLC38A1 Silent p.T374T 0.24 TCGA-ER-A193-06 12 46598182 46598182 G A SLC38A1 Nonsense_Mutation p.Q242* 0.28 TCGA-ER-A193-06 12 46598345 46598345 G A SLC38A1 Silent p.S225S 0.33 TCGA-ER-A193-06 12 4725009 4725009 C T AKAP3 Missense_Mutation p.V820I 0.29 tolerated(0.16) probably_damaging(0.998) TCGA-ER-A193-06 12 4736646 4736646 G A AKAP3 Silent p.F474F 0.19 TCGA-ER-A193-06 12 4737061 4737061 G A AKAP3 Missense_Mutation p.S336F 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 12 47472375 47472375 G A AMIGO2 Silent p.F137F 0.25 TCGA-ER-A193-06 12 48143184 48143184 G A RAPGEF3 Missense_Mutation p.R344C 0.28 deleterious(0) probably_damaging(0.968) TCGA-ER-A193-06 12 4829865 4829865 C T GALNT8 Missense_Mutation p.P8S 0.27 tolerated_low_confidence(0.59) benign(0.001) TCGA-ER-A193-06 12 4854713 4854713 T C GALNT8 Missense_Mutation p.F327L 0.31 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 12 50045807 50045807 G A FMNL3 Silent p.D504D 0.29 TCGA-ER-A193-06 12 50589631 50589631 G A LIMA1 Missense_Mutation p.P338S 0.25 tolerated(0.79) benign(0.018) TCGA-ER-A193-06 12 50855014 50855014 A G LARP4 Silent p.R406R 0.37 TCGA-ER-A193-06 12 51208074 51208074 G A ATF1 Missense_Mutation p.D175N 0.35 deleterious(0.05) probably_damaging(0.962) TCGA-ER-A193-06 12 5154633 5154633 C T KCNA5 Silent p.F440F 0.23 TCGA-ER-A193-06 12 52841151 52841151 G A KRT6B Silent p.G506G 0.26 TCGA-ER-A193-06 12 53010152 53010152 C T KRT73 Missense_Mutation p.E154K 0.32 deleterious(0) probably_damaging(0.984) TCGA-ER-A193-06 12 53162376 53162376 C T KRT76 3'UTR 0.50 TCGA-ER-A193-06 12 53207961 53207961 G A KRT4 5'UTR 0.30 TCGA-ER-A193-06 12 54686780 54686780 C T NFE2 Missense_Mutation p.R167Q 0.26 tolerated(0.11) probably_damaging(0.992) TCGA-ER-A193-06 12 54865020 54865020 A G GTSF1 Missense_Mutation p.Y5H 0.26 tolerated(0.15) benign(0.006) TCGA-ER-A193-06 12 54905611 54905611 G A NCKAP1L Missense_Mutation p.E254K 0.33 deleterious(0.01) benign(0.426) TCGA-ER-A193-06 12 54922077 54922077 C T NCKAP1L Missense_Mutation p.L808F 0.27 tolerated(0.6) benign(0.006) TCGA-ER-A193-06 12 54967154 54967154 C T PDE1B Silent p.I284I 0.28 TCGA-ER-A193-06 12 55615172 55615172 C T OR10A7 Missense_Mutation p.R122C 0.36 deleterious(0.03) possibly_damaging(0.564) TCGA-ER-A193-06 12 55615199 55615199 C T OR10A7 Missense_Mutation p.H131Y 0.35 tolerated(0.15) benign(0.011) TCGA-ER-A193-06 12 55641320 55641320 G A OR6C74 Missense_Mutation p.M83I 0.26 tolerated_low_confidence(1) benign(0.002) TCGA-ER-A193-06 12 55714790 55714790 G A OR6C1 Missense_Mutation p.R136Q 0.33 tolerated_low_confidence(0.53) benign(0.001) TCGA-ER-A193-06 12 56077639 56077639 G A METTL7B Missense_Mutation p.G181R 0.20 deleterious(0) benign(0.442) TCGA-ER-A193-06 12 56096685 56096685 G A ITGA7 Missense_Mutation p.R129W 0.23 deleterious(0) possibly_damaging(0.742) TCGA-ER-A193-06 12 56559111 56559111 C T SMARCC2 Missense_Mutation p.G1044R 0.38 tolerated_low_confidence(0.08) unknown(0) TCGA-ER-A193-06 12 56749512 56749512 G A STAT2 Nonsense_Mutation p.Q121* 0.23 TCGA-ER-A193-06 12 56965498 56965498 C T RBMS2 Missense_Mutation p.P134L 0.24 deleterious(0) probably_damaging(0.971) TCGA-ER-A193-06 12 57132269 57132269 C T PRIM1 Missense_Mutation p.E365K 0.36 tolerated(0.75) benign(0.001) TCGA-ER-A193-06 12 57351259 57351259 G A RDH16 5'UTR 0.35 TCGA-ER-A193-06 12 57860059 57860059 G A GLI1 Missense_Mutation p.E267K 0.30 deleterious(0) probably_damaging(0.969) TCGA-ER-A193-06 12 57872369 57872369 C T ARHGAP9 Missense_Mutation p.R163K 0.30 tolerated(0.44) benign(0.014) TCGA-ER-A193-06 12 6220133 6220133 C T VWF Silent p.G74G 0.26 TCGA-ER-A193-06 12 62892735 62892735 G A MON2 Missense_Mutation p.D158N 0.29 tolerated(0.36) benign(0.283) TCGA-ER-A193-06 12 63226043 63226043 T A PPM1H Nonsense_Mutation p.K88* 0.18 TCGA-ER-A193-06 12 6421342 6421342 C T PLEKHG6 5'UTR 0.37 TCGA-ER-A193-06 12 64488754 64488754 C T SRGAP1 Missense_Mutation p.R528W 0.34 deleterious(0) probably_damaging(0.993) TCGA-ER-A193-06 12 6682350 6682350 A G CHD4 Missense_Mutation p.M1816T 0.24 deleterious(0.01) probably_damaging(0.929) TCGA-ER-A193-06 12 7064084 7064084 C T PTPN6 Missense_Mutation p.S148F 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 12 7065701 7065701 C T PTPN6 Silent p.V348V 0.22 TCGA-ER-A193-06 12 7069123 7069123 C T PTPN6 Silent p.V465V 0.24 TCGA-ER-A193-06 12 7173934 7173934 G A C1S Silent p.V328V 0.48 TCGA-ER-A193-06 12 75804358 75804358 G A GLIPR1L2 Missense_Mutation p.E127K 0.55 tolerated(0.77) possibly_damaging(0.873) TCGA-ER-A193-06 12 77254062 77254062 A T CSRP2 Splice_Site p.X137_splice 0.42 TCGA-ER-A193-06 12 8050875 8050875 C T NANOGP1 RNA 0.52 TCGA-ER-A193-06 12 81657127 81657127 G A PPFIA2 Nonsense_Mutation p.Q1200* 0.39 TCGA-ER-A193-06 12 85466851 85466851 C T LRRIQ1 Silent p.F954F 0.36 TCGA-ER-A193-06 12 8666250 8666250 C T CLEC4D 5'UTR 0.59 TCGA-ER-A193-06 12 8671612 8671612 C T CLEC4D Silent p.T80T 0.32 TCGA-ER-A193-06 12 88472896 88472896 G A CEP290 Silent p.I1779I 0.54 TCGA-ER-A193-06 12 8976444 8976444 G A A2ML1 Silent p.Q125Q 0.34 TCGA-ER-A193-06 12 89917186 89917186 G T GALNT4 Silent p.R381R 0.42 TCGA-ER-A193-06 12 8995744 8995744 G A A2ML1 Missense_Mutation p.M421I 0.34 tolerated(0.2) benign(0.007) TCGA-ER-A193-06 12 91348364 91348364 G A CCER1 Silent p.H52H 0.20 TCGA-ER-A193-06 12 93804628 93804628 C T UBE2N Silent p.Q100Q 0.32 TCGA-ER-A193-06 12 96370431 96370431 G A HAL Silent p.L570L 0.71 TCGA-ER-A193-06 12 96728504 96728504 C T CDK17 Silent p.K37K 0.48 TCGA-ER-A193-06 12 988837 988837 C T WNK1 Silent p.F824F 0.25 TCGA-ER-A193-06 12 99898353 99898353 G A ANKS1B Missense_Mutation p.P447S 0.42 tolerated(0.78) benign(0.052) TCGA-ER-A193-06 13 100953732 100953732 G A PCCA Missense_Mutation p.E362K 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 13 101712174 101712174 G A NALCN Missense_Mutation p.P1634L 0.24 tolerated(0.07) benign(0.006) TCGA-ER-A193-06 13 101717830 101717830 G A NALCN Silent p.L1510L 0.21 TCGA-ER-A193-06 13 102368025 102368025 G A ITGBL1 3'UTR 0.42 TCGA-ER-A193-06 13 103698379 103698379 C T SLC10A2 3'UTR 0.27 TCGA-ER-A193-06 13 110831369 110831369 G A COL4A1 Missense_Mutation p.P787S 0.18 benign(0.002) TCGA-ER-A193-06 13 110838746 110838746 G A COL4A1 Missense_Mutation p.S628F 0.37 benign(0.002) TCGA-ER-A193-06 13 113852568 113852568 G A PCID2 Missense_Mutation p.P46L 0.40 tolerated(0.06) benign(0.087) TCGA-ER-A193-06 13 23907707 23907707 G A SACS Silent p.I3436I 0.36 TCGA-ER-A193-06 13 23928867 23928867 G A SACS Silent p.P628P 0.15 TCGA-ER-A193-06 13 24466191 24466191 C T C1QTNF9B Missense_Mutation p.G80E 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 13 25016098 25016098 A C PARP4 Missense_Mutation p.N1184K 0.42 tolerated(0.31) benign(0.003) TCGA-ER-A193-06 13 25744419 25744419 C T AMER2 Missense_Mutation p.E447K 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-ER-A193-06 13 28498687 28498687 A C PDX1 Missense_Mutation p.E234A 0.23 tolerated_low_confidence(0.66) benign(0.011) TCGA-ER-A193-06 13 29041073 29041073 C T FLT1 Missense_Mutation p.E119K 0.23 tolerated(0.99) benign(0.001) TCGA-ER-A193-06 13 30090380 30090380 G A SLC7A1 Missense_Mutation p.P561S 0.12 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 13 32929059 32929059 C T BRCA2 Silent p.L2357L 0.47 TCGA-ER-A193-06 13 32937450 32937450 C T BRCA2 Missense_Mutation p.S2704F 0.16 tolerated(0.05) benign(0.126) TCGA-ER-A193-06 13 33635593 33635593 G A KL Missense_Mutation p.E793K 0.32 deleterious(0) possibly_damaging(0.76) TCGA-ER-A193-06 13 35615209 35615209 G A NBEA Missense_Mutation p.R145Q 0.34 deleterious(0) possibly_damaging(0.511) TCGA-ER-A193-06 13 35733271 35733271 C T NBEA Missense_Mutation p.S988L 0.48 deleterious(0) benign(0.362) TCGA-ER-A193-06 13 36379916 36379916 C T DCLK1 Missense_Mutation p.E622K 0.35 tolerated(0.09) possibly_damaging(0.486) TCGA-ER-A193-06 13 36700119 36700119 G A DCLK1 Silent p.S52S 0.19 TCGA-ER-A193-06 13 38320118 38320118 C T TRPC4 Missense_Mutation p.D285N 0.19 tolerated(0.07) benign(0.098) TCGA-ER-A193-06 13 39454855 39454855 G A FREM2 Silent p.P3147P 0.40 TCGA-ER-A193-06 13 42393413 42393413 A T VWA8 Missense_Mutation p.F604I 0.23 tolerated(0.06) benign(0.004) TCGA-ER-A193-06 13 42404772 42404772 G A VWA8 Silent p.I531I 0.31 TCGA-ER-A193-06 13 42875185 42875185 A C AKAP11 Missense_Mutation p.Q768P 0.36 deleterious(0) probably_damaging(0.983) TCGA-ER-A193-06 13 45563540 45563540 G A NUFIP1 Missense_Mutation p.P11L 0.21 tolerated_low_confidence(0.07) benign(0.013) TCGA-ER-A193-06 13 45913690 45913690 A C TPT1 Missense_Mutation p.F114C 0.32 deleterious(0) probably_damaging(0.916) TCGA-ER-A193-06 13 67799944 67799944 G A PCDH9 Missense_Mutation p.P877S 0.18 tolerated(0.32) probably_damaging(0.985) TCGA-ER-A193-06 13 70371006 70371006 C T KLHL1 Silent p.V501V 0.14 TCGA-ER-A193-06 13 73350187 73350187 G A DIS3 Missense_Mutation p.P233L 0.38 deleterious(0.02) benign(0.13) TCGA-ER-A193-06 13 76382250 76382250 C T LMO7 Missense_Mutation p.P378S 0.15 tolerated(0.33) probably_damaging(0.979) TCGA-ER-A193-06 13 77742742 77742742 G A MYCBP2 Missense_Mutation p.P1941S 0.32 possibly_damaging(0.908) TCGA-ER-A193-06 13 78178501 78178501 C T SCEL Missense_Mutation p.L370F 0.30 tolerated_low_confidence(0.12) benign(0.045) TCGA-ER-A193-06 13 84454988 84454988 C T SLITRK1 Missense_Mutation p.D219N 0.40 deleterious(0) possibly_damaging(0.881) TCGA-ER-A193-06 13 86368957 86368957 C T SLITRK6 Missense_Mutation p.E563K 0.42 deleterious(0.01) benign(0.301) TCGA-ER-A193-06 13 92345554 92345554 G A GPC5 Missense_Mutation p.D147N 0.21 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 13 94197620 94197620 G A GPC6 Missense_Mutation p.E89K 0.35 deleterious(0.04) benign(0.196) TCGA-ER-A193-06 13 97485190 97485190 C T HS6ST3 Missense_Mutation p.S385F 0.32 deleterious(0) probably_damaging(0.98) TCGA-ER-A193-06 13 99047617 99047617 C T FARP1 Missense_Mutation p.P434L 0.36 tolerated(0.15) benign(0.002) TCGA-ER-A193-06 13 99047618 99047618 C T FARP1 Silent p.P434P 0.36 TCGA-ER-A193-06 13 99540745 99540745 G A DOCK9 Missense_Mutation p.P616S 0.39 tolerated(0.62) benign(0.001) TCGA-ER-A193-06 13 99907871 99907871 C T GPR18 Missense_Mutation p.E86K 0.26 tolerated(0.62) benign(0.006) TCGA-ER-A193-06 14 100615479 100615479 G A DEGS2 Silent p.F217F 0.27 TCGA-ER-A193-06 14 100820807 100820807 G A WARS Silent p.H173H 0.40 TCGA-ER-A193-06 14 101351056 101351056 C T RTL1 Missense_Mutation p.E24K 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A193-06 14 101429389 101429389 C T AL132709.8 Intron 0.27 TCGA-ER-A193-06 14 103440442 103440442 G A CDC42BPB Missense_Mutation p.R518C 0.35 deleterious(0) possibly_damaging(0.88) TCGA-ER-A193-06 14 104641820 104641820 C T KIF26A Missense_Mutation p.P899S 0.31 tolerated(0.11) benign(0.149) TCGA-ER-A193-06 14 105246461 105246461 G A AKT1 Nonsense_Mutation p.Q47* 0.39 TCGA-ER-A193-06 14 105518000 105518000 G A GPR132 Silent p.T158T 0.32 TCGA-ER-A193-06 14 105848902 105848902 C T PACS2 Missense_Mutation p.S501L 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A193-06 14 106091498 106091498 C T IGHG4 Missense_Mutation p.M132I 0.14 tolerated(0.09) benign(0.05) TCGA-ER-A193-06 14 106173660 106173660 C T IGHA1 Missense_Mutation p.E303K 0.10 tolerated(0.06) probably_damaging(0.931) TCGA-ER-A193-06 14 106208050 106208050 C T IGHG1 Silent p.L251L 0.44 TCGA-ER-A193-06 14 106235802 106235802 G A IGHG3 Silent p.F302F 0.33 TCGA-ER-A193-06 14 106330064 106330064 G A IGHJ5 Silent p.F3F 0.12 TCGA-ER-A193-06 14 106471545 106471545 G A IGHV1-3 Missense_Mutation p.H18Y 0.57 tolerated(0.12) benign(0.03) TCGA-ER-A193-06 14 106780804 106780804 C T IGHV4-28 Silent p.Q20Q 0.28 TCGA-ER-A193-06 14 106805601 106805601 C T IGHV4-31 Missense_Mutation p.R15K 0.10 tolerated_low_confidence(0.1) possibly_damaging(0.696) TCGA-ER-A193-06 14 106994065 106994065 C A IGHV3-48 Missense_Mutation p.G34W 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A193-06 14 107218782 107218782 G A IGHV3-74 Missense_Mutation p.S82F 0.30 deleterious_low_confidence(0.02) benign(0.235) TCGA-ER-A193-06 14 19377629 19377629 G A OR11H12 Missense_Mutation p.M12I 0.22 deleterious(0.02) benign(0.291) TCGA-ER-A193-06 14 19378561 19378561 C T OR11H12 Missense_Mutation p.S323F 0.34 tolerated(0.11) benign(0.002) TCGA-ER-A193-06 14 20344630 20344630 C T OR4K2 Silent p.I68I 0.26 TCGA-ER-A193-06 14 20389214 20389214 C T OR4K5 Missense_Mutation p.A150V 0.33 tolerated(0.96) benign(0.035) TCGA-ER-A193-06 14 20404396 20404396 G A OR4K1 Missense_Mutation p.D191N 0.33 deleterious(0.04) benign(0.032) TCGA-ER-A193-06 14 20586276 20586276 C T OR4K17 Silent p.I237I 0.21 TCGA-ER-A193-06 14 20586278 20586278 C T OR4K17 Missense_Mutation p.S238F 0.20 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 14 20692283 20692283 G A OR11H6 Missense_Mutation p.D139N 0.23 deleterious(0) benign(0.356) TCGA-ER-A193-06 14 20943275 20943275 G A PNP Silent p.Q172Q 0.28 TCGA-ER-A193-06 14 21500292 21500292 G A TPPP2 3'UTR 0.25 TCGA-ER-A193-06 14 21541322 21541322 G A ARHGEF40 Missense_Mutation p.R41Q 0.33 tolerated(0.13) benign(0.003) TCGA-ER-A193-06 14 21838552 21838552 G A SUPT16H Silent p.F142F 0.24 TCGA-ER-A193-06 14 21868700 21868700 G A CHD8 Missense_Mutation p.T1481I 0.24 tolerated(0.29) benign(0.095) TCGA-ER-A193-06 14 21990313 21990313 G A SALL2 3'UTR 0.48 TCGA-ER-A193-06 14 21991828 21991828 G A SALL2 Silent p.F678F 0.24 TCGA-ER-A193-06 14 22102213 22102213 G A OR10G2 Silent p.F262F 0.31 TCGA-ER-A193-06 14 22386445 22386445 C T TRAV13-2 Nonsense_Mutation p.R5* 0.28 TCGA-ER-A193-06 14 22433702 22433702 G A TRAV12-3 5'UTR 0.39 TCGA-ER-A193-06 14 22447334 22447334 G A TRAV8-6 Silent p.T105T 0.42 TCGA-ER-A193-06 14 23380554 23380554 G A RBM23 Missense_Mutation p.P17S 0.28 deleterious(0.04) possibly_damaging(0.857) TCGA-ER-A193-06 14 23524311 23524311 G A CDH24 Silent p.P151P 0.34 TCGA-ER-A193-06 14 23588123 23588123 C A CEBPE Missense_Mutation p.V60L 0.27 tolerated(0.77) benign(0.001) TCGA-ER-A193-06 14 23853878 23853878 G A MYH6 Missense_Mutation p.H1780Y 0.24 deleterious(0) benign(0.047) TCGA-ER-A193-06 14 23886806 23886806 C T MYH7 Missense_Mutation p.R1420Q 0.30 tolerated(0.06) probably_damaging(1) TCGA-ER-A193-06 14 23891523 23891523 G A MYH7 Silent p.S1037S 0.37 TCGA-ER-A193-06 14 23896993 23896993 G A MYH7 Silent p.F563F 0.25 TCGA-ER-A193-06 14 23947208 23947208 C T NGDN Intron 0.27 TCGA-ER-A193-06 14 24040243 24040243 G A JPH4 Missense_Mutation p.P566L 0.31 tolerated(0.48) benign(0.001) TCGA-ER-A193-06 14 24040471 24040471 G A JPH4 Missense_Mutation p.S490F 0.35 deleterious(0.01) possibly_damaging(0.854) TCGA-ER-A193-06 14 24787879 24787879 C T ADCY4 Missense_Mutation p.G1021E 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 14 26939573 26939573 G A NOVA1 Intron 0.60 TCGA-ER-A193-06 14 33068655 33068655 G A AKAP6 Missense_Mutation p.E837K 0.28 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 14 36840903 36840903 G A DPPA3P2 RNA 0.38 TCGA-ER-A193-06 14 38310788 38310788 C T TTC6 Missense_Mutation p.P1813S 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 14 38311586 38311586 C T TTC6 3'UTR 0.33 TCGA-ER-A193-06 14 39716748 39716748 G A MIA2 Missense_Mutation p.D324N 0.24 tolerated(0.15) benign(0.178) TCGA-ER-A193-06 14 44975396 44975396 G A FSCB Silent p.F265F 0.26 TCGA-ER-A193-06 14 51390768 51390768 G A PYGL Silent p.S193S 0.31 TCGA-ER-A193-06 14 58056038 58056038 G A SLC35F4 Silent p.F197F 0.34 TCGA-ER-A193-06 14 58060704 58060704 C T SLC35F4 Missense_Mutation p.G117E 0.36 tolerated(0.2) benign(0.113) TCGA-ER-A193-06 14 59798110 59798110 C T DAAM1 Missense_Mutation p.P582S 0.27 tolerated(0.46) unknown(0) TCGA-ER-A193-06 14 59820639 59820639 G A DAAM1 Silent p.K781K 0.21 TCGA-ER-A193-06 14 62462686 62462686 G A SYT16 5'UTR 0.37 TCGA-ER-A193-06 14 63175075 63175075 G A KCNH5 Silent p.V706V 0.25 TCGA-ER-A193-06 14 64690033 64690033 G A SYNE2 Missense_Mutation p.E6773K 0.29 benign(0.011) TCGA-ER-A193-06 14 65239632 65239632 C T SPTB Missense_Mutation p.G1740E 0.22 tolerated(0.45) probably_damaging(0.964) TCGA-ER-A193-06 14 65472902 65472902 C T CHURC1-FNTB Intron 0.21 TCGA-ER-A193-06 14 68191872 68191872 G A RDH12 Missense_Mutation p.E82K 0.26 deleterious(0.01) possibly_damaging(0.672) TCGA-ER-A193-06 14 71209294 71209294 C T MAP3K9 Nonsense_Mutation p.W447* 0.40 TCGA-ER-A193-06 14 73464862 73464862 C T ZFYVE1 Silent p.E215E 0.17 TCGA-ER-A193-06 14 74203779 74203779 G A ELMSAN1 Silent p.N557N 0.32 TCGA-ER-A193-06 14 74444066 74444066 G A ENTPD5 Silent p.I151I 0.25 TCGA-ER-A193-06 14 75265512 75265512 C T YLPM1 Missense_Mutation p.P1171L 0.24 possibly_damaging(0.724) TCGA-ER-A193-06 14 76964656 76964656 C T ESRRB Missense_Mutation p.P386L 0.30 tolerated(0.13) probably_damaging(0.957) TCGA-ER-A193-06 14 77765075 77765075 G A POMT2 Silent p.A321A 0.60 TCGA-ER-A193-06 14 80669341 80669341 C T DIO2 Silent p.A207A 0.39 TCGA-ER-A193-06 14 81744041 81744041 G A STON2 Silent p.F538F 0.36 TCGA-ER-A193-06 14 86088740 86088740 G A FLRT2 Silent p.G294G 0.29 TCGA-ER-A193-06 14 88658580 88658580 C T KCNK10 Missense_Mutation p.D286N 0.36 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 14 89305844 89305844 G C TTC8 Missense_Mutation p.D65H 0.34 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 14 92189438 92189438 G A CATSPERB Silent p.I88I 0.31 TCGA-ER-A193-06 14 94083628 94083628 C T UNC79 Missense_Mutation p.A1224V 0.29 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 14 94395482 94395482 C T FAM181A Missense_Mutation p.P346L 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-ER-A193-06 14 94772531 94772531 C T SERPINA6 Silent p.K303K 0.34 TCGA-ER-A193-06 14 94933631 94933631 C T SERPINA9 Missense_Mutation p.M257I 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-ER-A193-06 14 95923555 95923555 T G SYNE3 Missense_Mutation p.N250H 0.37 tolerated(0.13) benign(0.001) TCGA-ER-A193-06 14 95923556 95923556 C T SYNE3 Silent p.R249R 0.37 TCGA-ER-A193-06 14 96703494 96703494 C T BDKRB2 Missense_Mutation p.S17F 0.38 deleterious_low_confidence(0.02) benign(0.086) TCGA-ER-A193-06 14 96790257 96790257 G A ATG2B Missense_Mutation p.S839L 0.29 tolerated(0.09) benign(0.055) TCGA-ER-A193-06 15 100821477 100821477 C T ADAMTS17 Missense_Mutation p.G249E 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 15 101024870 101024870 C T CERS3 Missense_Mutation p.D98N 0.54 deleterious(0.02) probably_damaging(0.957) TCGA-ER-A193-06 15 101905247 101905247 C T PCSK6 Intron 0.56 TCGA-ER-A193-06 15 102185351 102185351 G A TM2D3 Missense_Mutation p.P173S 0.71 tolerated(0.41) benign(0.011) TCGA-ER-A193-06 15 102215839 102215839 G A TARSL2 Silent p.F584F 0.36 TCGA-ER-A193-06 15 20170008 20170008 G A IGHV1OR15-9 Silent p.T88T 0.14 TCGA-ER-A193-06 15 20489461 20489461 C T CHEK2P2 RNA 0.11 TCGA-ER-A193-06 15 24922388 24922388 C T NPAP1 Silent p.I458I 0.38 TCGA-ER-A193-06 15 24923425 24923425 C T NPAP1 Missense_Mutation p.S804F 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.449) TCGA-ER-A193-06 15 24924009 24924009 G T NPAP1 Nonsense_Mutation p.G999* 0.15 TCGA-ER-A193-06 15 25444520 25444520 T G SNORD115-14 3'Flank 0.44 TCGA-ER-A193-06 15 25966939 25966939 G A ATP10A Nonsense_Mutation p.R410* 0.21 TCGA-ER-A193-06 15 25966940 25966940 G A ATP10A Silent p.C409C 0.21 TCGA-ER-A193-06 15 28457652 28457652 G A HERC2 Silent p.N2288N 0.24 TCGA-ER-A193-06 15 32460200 32460200 G A CHRNA7 Silent p.E379E 0.14 TCGA-ER-A193-06 15 33920732 33920732 C T RYR3 Missense_Mutation p.L879F 0.56 probably_damaging(1) TCGA-ER-A193-06 15 34105726 34105726 G A RYR3 Missense_Mutation p.R3483Q 0.13 possibly_damaging(0.67) TCGA-ER-A193-06 15 37387790 37387790 G A MEIS2 Missense_Mutation p.S138F 0.22 deleterious(0.01) benign(0.436) TCGA-ER-A193-06 15 38234548 38234548 G A TMCO5A Intron 0.09 TCGA-ER-A193-06 15 40751535 40751535 C T BAHD1 Missense_Mutation p.P291L 0.16 deleterious(0.02) benign(0.069) TCGA-ER-A193-06 15 40921491 40921491 A T CASC5 Silent p.I1894I 0.40 TCGA-ER-A193-06 15 41044186 41044186 G A RMDN3 Silent p.V126V 0.29 TCGA-ER-A193-06 15 41165486 41165486 C T RHOV Missense_Mutation p.G161S 0.35 tolerated(0.41) benign(0.006) TCGA-ER-A193-06 15 41191790 41191790 C T VPS18 Silent p.F258F 0.29 TCGA-ER-A193-06 15 41194915 41194915 A T VPS18 Missense_Mutation p.E766D 0.16 deleterious(0.04) possibly_damaging(0.513) TCGA-ER-A193-06 15 42041639 42041639 C T MGA Missense_Mutation p.A1945V 0.17 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 15 42158681 42158681 C T SPTBN5 Nonsense_Mutation p.W2164* 0.17 TCGA-ER-A193-06 15 42361047 42361047 C T PLA2G4D Missense_Mutation p.E775K 0.33 tolerated(0.07) benign(0.025) TCGA-ER-A193-06 15 42386664 42386664 C T PLA2G4D 5'UTR 0.14 TCGA-ER-A193-06 15 42631902 42631902 G A GANC Missense_Mutation p.E627K 0.24 probably_damaging(0.991) TCGA-ER-A193-06 15 42643552 42643552 C T GANC Missense_Mutation p.P853S 0.32 benign(0.001) TCGA-ER-A193-06 15 43269040 43269040 G A UBR1 Missense_Mutation p.S1415F 0.30 deleterious(0.01) possibly_damaging(0.794) TCGA-ER-A193-06 15 43931848 43931848 G A CATSPER2 Missense_Mutation p.A237V 0.35 deleterious(0) possibly_damaging(0.657) TCGA-ER-A193-06 15 43990308 43990308 C T CKMT1A Missense_Mutation p.R325W 0.27 deleterious(0.01) possibly_damaging(0.746) TCGA-ER-A193-06 15 44087111 44087111 C A SERINC4 3'UTR 0.52 TCGA-ER-A193-06 15 44181070 44181070 C T FRMD5 Nonsense_Mutation p.W243* 0.41 TCGA-ER-A193-06 15 45848181 45848181 G A RP11-96O20.2 5'Flank 0.41 TCGA-ER-A193-06 15 48451901 48451901 G A MYEF2 Missense_Mutation p.P209L 0.30 deleterious(0) probably_damaging(0.983) TCGA-ER-A193-06 15 49327569 49327569 G A SECISBP2L Nonsense_Mutation p.R164* 0.19 TCGA-ER-A193-06 15 49327652 49327652 G A SECISBP2L Missense_Mutation p.A136V 0.14 deleterious_low_confidence(0.03) benign(0.119) TCGA-ER-A193-06 15 49663592 49663592 G A FAM227B Silent p.I339I 0.13 TCGA-ER-A193-06 15 49775396 49775396 G A FGF7 Missense_Mutation p.G112E 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 15 49867220 49867220 G A FAM227B Silent p.L211L 0.12 TCGA-ER-A193-06 15 50867312 50867312 G A TRPM7 Missense_Mutation p.R1586C 0.28 deleterious(0) probably_damaging(0.993) TCGA-ER-A193-06 15 51294751 51294751 G A AP4E1 Silent p.L1102L 0.32 TCGA-ER-A193-06 15 51766543 51766543 G A DMXL2 Missense_Mutation p.S2404L 0.29 tolerated(0.11) benign(0.087) TCGA-ER-A193-06 15 51795182 51795182 C A DMXL2 Missense_Mutation p.G938V 0.13 tolerated(0.19) benign(0.012) TCGA-ER-A193-06 15 52192439 52192439 C T TMOD3 Silent p.L275L 0.31 TCGA-ER-A193-06 15 52517715 52517715 G A MYO5C Silent p.F1074F 0.11 TCGA-ER-A193-06 15 53908079 53908079 G A WDR72 Missense_Mutation p.S775F 0.42 tolerated(0.07) benign(0.078) TCGA-ER-A193-06 15 56387725 56387725 G A RFX7 Missense_Mutation p.S734F 0.24 deleterious_low_confidence(0) benign(0.173) TCGA-ER-A193-06 15 57835964 57835964 C T CGNL1 Missense_Mutation p.S1121F 0.09 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 15 60768358 60768358 G A NARG2 Missense_Mutation p.S17F 0.27 deleterious(0.01) possibly_damaging(0.8) TCGA-ER-A193-06 15 63011987 63011987 C T TLN2 Nonsense_Mutation p.Q967* 0.20 TCGA-ER-A193-06 15 65988768 65988768 G A DENND4A Silent p.S1005S 0.71 TCGA-ER-A193-06 15 67664767 67664767 C T IQCH Missense_Mutation p.L358F 0.17 tolerated(0.28) benign(0.203) TCGA-ER-A193-06 15 68607993 68607993 C T ITGA11 Missense_Mutation p.G930S 0.12 tolerated(1) benign(0.01) TCGA-ER-A193-06 15 73635884 73635884 G A HCN4 Missense_Mutation p.P351S 0.46 deleterious(0) benign(0.126) TCGA-ER-A193-06 15 74368272 74368272 C T GOLGA6A Missense_Mutation p.E207K 0.07 deleterious(0) possibly_damaging(0.831) TCGA-ER-A193-06 15 74630921 74630921 G A CYP11A1 Silent p.F475F 0.59 TCGA-ER-A193-06 15 75652466 75652466 G T MAN2C1 Missense_Mutation p.F557L 0.16 tolerated(0.07) benign(0.261) TCGA-ER-A193-06 15 77473384 77473384 G A PEAK1 Silent p.P295P 0.18 TCGA-ER-A193-06 15 78390783 78390783 G A SH2D7 Missense_Mutation p.D164N 0.61 tolerated(0.08) benign(0.026) TCGA-ER-A193-06 15 79298727 79298727 T A RASGRF1 Missense_Mutation p.T639S 0.18 deleterious(0) benign(0.298) TCGA-ER-A193-06 15 79310109 79310109 C T RASGRF1 Intron 0.63 TCGA-ER-A193-06 15 81627135 81627135 C T TMC3 Silent p.P795P 0.17 TCGA-ER-A193-06 15 83926106 83926106 A T BNC1 3'UTR 0.16 TCGA-ER-A193-06 15 83933168 83933168 C T BNC1 Missense_Mutation p.E279K 0.65 tolerated(0.1) benign(0.26) TCGA-ER-A193-06 15 88472408 88472408 G A NTRK3 Intron 0.16 TCGA-ER-A193-06 15 89008035 89008035 T C MRPL46 Missense_Mutation p.E163G 0.10 deleterious(0) benign(0.093) TCGA-ER-A193-06 15 89843548 89843548 G A FANCI Missense_Mutation p.G941R 0.47 deleterious(0.05) benign(0.037) TCGA-ER-A193-06 15 91496169 91496169 C T UNC45A Silent p.L772L 0.53 TCGA-ER-A193-06 15 91578389 91578389 C T AC068831.10 RNA 0.16 TCGA-ER-A193-06 15 97328368 97328368 C T SPATA8 3'UTR 0.07 TCGA-ER-A193-06 16 14014012 14014012 G A ERCC4 5'Flank 0.36 TCGA-ER-A193-06 16 14026227 14026227 T C ERCC4 Intron 0.59 TCGA-ER-A193-06 16 1557342 1557342 C T TELO2 Silent p.F754F 0.32 TCGA-ER-A193-06 16 16267203 16267203 G A ABCC6 Missense_Mutation p.P909S 0.45 tolerated(0.28) benign(0.002) TCGA-ER-A193-06 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.51 TCGA-ER-A193-06 16 19041653 19041653 C T TMC7 Silent p.I273I 0.44 TCGA-ER-A193-06 16 19067872 19067872 C T TMC7 Missense_Mutation p.S627F 0.45 deleterious(0.02) probably_damaging(0.976) TCGA-ER-A193-06 16 19278375 19278375 C T SYT17 Missense_Mutation p.P468S 0.50 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A193-06 16 20944721 20944721 C T DNAH3 Missense_Mutation p.E4036K 0.43 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 16 20975497 20975497 C T DNAH3 Missense_Mutation p.E3237K 0.44 deleterious(0.01) possibly_damaging(0.794) TCGA-ER-A193-06 16 21328395 21328395 G A CRYM-AS1 RNA 0.47 TCGA-ER-A193-06 16 2140185 2140185 T C PKD1 Missense_Mutation p.K4152R 0.52 benign(0.109) TCGA-ER-A193-06 16 2223226 2223226 G C TRAF7 Missense_Mutation p.E280Q 0.40 tolerated(0.21) benign(0.031) TCGA-ER-A193-06 16 2284185 2284185 C T E4F1 Silent p.F463F 0.46 TCGA-ER-A193-06 16 28847424 28847424 C T ATXN2L Silent p.P1022P 0.37 TCGA-ER-A193-06 16 29996834 29996834 G A TAOK2 Missense_Mutation p.E575K 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-ER-A193-06 16 29998174 29998174 A T TAOK2 Missense_Mutation p.I861F 0.34 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-ER-A193-06 16 30583484 30583484 G A ZNF688 5'UTR 0.48 TCGA-ER-A193-06 16 31088662 31088662 G A ZNF646 Silent p.E339E 0.50 TCGA-ER-A193-06 16 3119352 3119352 A T IL32 Missense_Mutation p.K188I 0.31 deleterious_low_confidence(0.01) benign(0.148) TCGA-ER-A193-06 16 31434754 31434754 G A ITGAD Missense_Mutation p.D981N 0.46 tolerated(0.22) benign(0.007) TCGA-ER-A193-06 16 32077573 32077573 C T IGHV3OR16-9 Missense_Mutation p.S63F 0.22 deleterious_low_confidence(0) benign(0.235) TCGA-ER-A193-06 16 3406744 3406744 G A OR2C1 Silent p.Q268Q 0.48 TCGA-ER-A193-06 16 3487539 3487539 C T ZNF597 Splice_Site p.X54_splice 0.46 TCGA-ER-A193-06 16 418546 418546 G A MRPL28 Silent p.H177H 0.35 TCGA-ER-A193-06 16 4310097 4310097 G A TFAP4 Silent p.I272I 0.46 TCGA-ER-A193-06 16 4847783 4847783 G A ROGDI Missense_Mutation p.P252S 0.31 deleterious(0.05) probably_damaging(1) TCGA-ER-A193-06 16 49670894 49670894 G A ZNF423 Silent p.T723T 0.43 TCGA-ER-A193-06 16 55706064 55706064 C T SLC6A2 Silent p.F207F 0.40 TCGA-ER-A193-06 16 56673228 56673228 C T MT1A Silent p.T27T 0.41 TCGA-ER-A193-06 16 57935322 57935322 C T CNGB1 Missense_Mutation p.M970I 0.49 deleterious(0.01) benign(0.096) TCGA-ER-A193-06 16 67694932 67694932 C T PARD6A 5'UTR 0.36 TCGA-ER-A193-06 16 71025992 71025992 C T HYDIN Missense_Mutation p.D1256N 0.44 benign(0.002) TCGA-ER-A193-06 16 74443494 74443494 C T CLEC18B Nonsense_Mutation p.W428* 0.16 TCGA-ER-A193-06 16 74706322 74706322 G A MLKL 3'UTR 0.52 TCGA-ER-A193-06 16 74990485 74990485 T C WDR59 Missense_Mutation p.N43S 0.35 tolerated(0.06) benign(0.001) TCGA-ER-A193-06 16 75263526 75263526 G A BCAR1 Silent p.A878A 0.65 TCGA-ER-A193-06 16 76569505 76569505 T A CNTNAP4 Missense_Mutation p.M867K 0.44 tolerated(0.37) benign(0.002) TCGA-ER-A193-06 16 77228850 77228850 C T MON1B Missense_Mutation p.A365V 0.25 tolerated(0.06) benign(0.102) TCGA-ER-A193-06 16 77465339 77465339 C T ADAMTS18 Silent p.A116A 0.53 TCGA-ER-A193-06 16 789655 789655 G A NARFL Silent p.F50F 0.42 TCGA-ER-A193-06 16 80638256 80638256 G A CDYL2 3'UTR 0.45 TCGA-ER-A193-06 16 81241209 81241209 G A PKD1L2 Silent p.F264F 0.33 TCGA-ER-A193-06 16 81944272 81944272 C T PLCG2 Silent p.F627F 0.49 TCGA-ER-A193-06 16 81960742 81960742 G A PLCG2 Missense_Mutation p.E825K 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A193-06 16 82032955 82032955 C T SDR42E1 Missense_Mutation p.E315K 0.56 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 16 8862722 8862722 C T ABAT Silent p.I236I 0.45 TCGA-ER-A193-06 16 8987809 8987809 G A USP7 3'UTR 0.42 TCGA-ER-A193-06 17 10212617 10212617 C T MYH13 Silent p.R1701R 0.49 TCGA-ER-A193-06 17 10233724 10233724 G A MYH13 Silent p.F805F 0.17 TCGA-ER-A193-06 17 10253951 10253951 C T MYH13 Missense_Mutation p.G356R 0.13 deleterious(0) possibly_damaging(0.867) TCGA-ER-A193-06 17 10267645 10267645 C T MYH13 Missense_Mutation p.R68Q 0.42 tolerated(0.21) benign(0.001) TCGA-ER-A193-06 17 10297626 10297626 C T MYH8 Silent p.R1702R 0.38 TCGA-ER-A193-06 17 10398572 10398572 C T MYH1 Silent p.E1744E 0.43 TCGA-ER-A193-06 17 10400388 10400388 C T MYH1 Missense_Mutation p.E1552K 0.14 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 17 10400472 10400472 C T MYH1 Missense_Mutation p.G1524R 0.27 deleterious(0.01) possibly_damaging(0.814) TCGA-ER-A193-06 17 10401102 10401102 C T MYH1 Silent p.R1438R 0.31 TCGA-ER-A193-06 17 10441041 10441041 C T MYH2 Missense_Mutation p.E510K 0.39 deleterious(0.01) benign(0.033) TCGA-ER-A193-06 17 10443353 10443353 C T MYH2 Missense_Mutation p.E347K 0.18 deleterious(0) benign(0.419) TCGA-ER-A193-06 17 10532961 10532961 G A MYH3 Nonsense_Mutation p.Q1917* 0.58 TCGA-ER-A193-06 17 11593480 11593480 G A DNAH9 Missense_Mutation p.M1447I 0.18 benign(0.062) TCGA-ER-A193-06 17 11671833 11671833 C T DNAH9 Missense_Mutation p.P2412S 0.31 probably_damaging(0.978) TCGA-ER-A193-06 17 11726147 11726147 C T DNAH9 Silent p.F3014F 0.35 TCGA-ER-A193-06 17 11827196 11827196 G A DNAH9 Missense_Mutation p.E3939K 0.13 probably_damaging(0.998) TCGA-ER-A193-06 17 12666456 12666456 C T MYOCD Missense_Mutation p.S819F 0.15 deleterious(0.01) possibly_damaging(0.857) TCGA-ER-A193-06 17 12862180 12862180 G A ARHGAP44 Missense_Mutation p.D497N 0.50 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-ER-A193-06 17 1478958 1478958 C T SLC43A2 Silent p.Q550Q 0.42 TCGA-ER-A193-06 17 1538608 1538608 G A SCARF1 Missense_Mutation p.S646F 0.19 deleterious(0.03) benign(0.243) TCGA-ER-A193-06 17 16068451 16068451 C T NCOR1 Missense_Mutation p.E154K 0.09 possibly_damaging(0.884) TCGA-ER-A193-06 17 1637434 1637434 C T WDR81 Silent p.F1701F 0.50 TCGA-ER-A193-06 17 17124710 17124710 G A FLCN Intron 0.33 TCGA-ER-A193-06 17 1715306 1715306 G A SMYD4 Nonsense_Mutation p.Q80* 0.38 TCGA-ER-A193-06 17 17425608 17425608 G A PEMT Silent p.F102F 0.14 TCGA-ER-A193-06 17 17751084 17751084 G A TOM1L2 Silent p.F463F 0.44 TCGA-ER-A193-06 17 18034824 18034824 G A MYO15A Silent p.E1395E 0.43 TCGA-ER-A193-06 17 18138301 18138301 G A LLGL1 Missense_Mutation p.E352K 0.32 tolerated(0.12) benign(0.227) TCGA-ER-A193-06 17 18156662 18156662 G A FLII Silent p.F322F 0.20 TCGA-ER-A193-06 17 21731137 21731137 C T UBBP4 Silent p.L147L 0.18 TCGA-ER-A193-06 17 21825515 21825515 G A FAM27L RNA 0.19 TCGA-ER-A193-06 17 2323266 2323266 A T METTL16 Nonstop_Mutation p.*563Kext*10 0.33 TCGA-ER-A193-06 17 263022 263022 C T C17orf97 Missense_Mutation p.P130S 0.35 tolerated_low_confidence(0.47) benign(0.277) TCGA-ER-A193-06 17 26856216 26856216 C T FOXN1 Silent p.L268L 0.44 TCGA-ER-A193-06 17 27493764 27493764 G A MYO18A Silent p.P65P 0.23 TCGA-ER-A193-06 17 27943746 27943746 C T CORO6 Silent p.L326L 0.15 TCGA-ER-A193-06 17 28405450 28405450 C T EFCAB5 Silent p.I985I 0.12 TCGA-ER-A193-06 17 2901625 2901625 C T RAP1GAP2 Silent p.I385I 0.12 TCGA-ER-A193-06 17 30358412 30358412 T A LRRC37B Missense_Mutation p.N637K 0.12 deleterious(0) probably_damaging(0.913) TCGA-ER-A193-06 17 3118978 3118978 G A OR1A1 Missense_Mutation p.E22K 0.41 tolerated(0.13) benign(0.003) TCGA-ER-A193-06 17 31438965 31438965 C T ASIC2 Missense_Mutation p.D277N 0.14 tolerated(0.06) possibly_damaging(0.871) TCGA-ER-A193-06 17 33289621 33289621 G A ZNF830 Missense_Mutation p.E346K 0.45 deleterious(0.03) possibly_damaging(0.856) TCGA-ER-A193-06 17 33316660 33316660 C T LIG3 Silent p.F289F 0.38 TCGA-ER-A193-06 17 33496856 33496856 G A UNC45B Missense_Mutation p.G485R 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 17 33520530 33520530 G T SLC35G3 Missense_Mutation p.S266Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 17 35470112 35470112 G A ACACA Silent p.P2121P 0.19 TCGA-ER-A193-06 17 35872918 35872918 C T DUSP14 Missense_Mutation p.P182S 0.32 deleterious(0) probably_damaging(0.987) TCGA-ER-A193-06 17 35928907 35928907 G A SYNRG Silent p.S489S 0.15 TCGA-ER-A193-06 17 36492922 36492922 G A GPR179 Missense_Mutation p.A389V 0.31 deleterious(0.03) benign(0.403) TCGA-ER-A193-06 17 36499102 36499102 C T GPR179 Missense_Mutation p.D191N 0.23 tolerated(0.49) possibly_damaging(0.459) TCGA-ER-A193-06 17 3662693 3662693 C T ITGAE Intron 0.33 TCGA-ER-A193-06 17 36927333 36927333 G A PIP4K2B Missense_Mutation p.P334S 0.09 tolerated(0.52) benign(0.004) TCGA-ER-A193-06 17 37331907 37331907 G A CACNB1 Missense_Mutation p.P446S 0.17 tolerated_low_confidence(0.13) benign(0.002) TCGA-ER-A193-06 17 37873615 37873615 C T ERBB2 Missense_Mutation p.P594S 0.13 tolerated(0.05) benign(0.001) TCGA-ER-A193-06 17 38060981 38060981 G A GSDMB 3'UTR 0.38 TCGA-ER-A193-06 17 39522757 39522757 C T KRT33B Missense_Mutation p.E185K 0.14 deleterious(0) benign(0.247) TCGA-ER-A193-06 17 39535320 39535320 G A KRT34 Missense_Mutation p.R371C 0.30 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 17 39767899 39767899 G A KRT16 Silent p.F202F 0.23 TCGA-ER-A193-06 17 3977624 3977624 G A ZZEF1 Missense_Mutation p.P1169S 0.33 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 17 39959569 39959569 G A LEPREL4 Missense_Mutation p.P421S 0.25 deleterious(0) unknown(0) TCGA-ER-A193-06 17 39985093 39985093 C A NT5C3B Silent p.V172V 0.38 TCGA-ER-A193-06 17 40271325 40271325 G A KAT2A Silent p.F337F 0.41 TCGA-ER-A193-06 17 40343101 40343101 A T GHDC Silent p.L339L 0.17 TCGA-ER-A193-06 17 40476848 40476848 G A STAT3 Missense_Mutation p.T494I 0.46 tolerated(0.46) possibly_damaging(0.593) TCGA-ER-A193-06 17 40936049 40936049 C T WNK4 Missense_Mutation p.P296S 0.33 deleterious(0) unknown(0) TCGA-ER-A193-06 17 40940333 40940333 C T WNK4 Missense_Mutation p.L650F 0.17 deleterious(0) unknown(0) TCGA-ER-A193-06 17 41063392 41063392 C T G6PC Silent p.I341I 0.17 TCGA-ER-A193-06 17 41611318 41611318 C T ETV4 Missense_Mutation p.E98K 0.37 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 17 41939175 41939175 G A CD300LG Missense_Mutation p.E299K 0.19 tolerated(0.08) possibly_damaging(0.625) TCGA-ER-A193-06 17 42335105 42335105 G A SLC4A1 Silent p.F451F 0.17 TCGA-ER-A193-06 17 45364510 45364510 G A ITGB3 Silent p.L284L 0.23 TCGA-ER-A193-06 17 46474085 46474085 G A SKAP1 Missense_Mutation p.H37Y 0.46 deleterious(0.01) benign(0.081) TCGA-ER-A193-06 17 46620542 46620542 C T HOXB2 Missense_Mutation p.G320E 0.41 tolerated(0.32) benign(0.01) TCGA-ER-A193-06 17 47041831 47041831 G A GIP Missense_Mutation p.S33F 0.33 deleterious(0.01) benign(0.144) TCGA-ER-A193-06 17 47103026 47103026 G A IGF2BP1 Missense_Mutation p.E95K 0.19 deleterious(0.01) possibly_damaging(0.883) TCGA-ER-A193-06 17 48263204 48263204 C T COL1A1 Missense_Mutation p.E1395K 0.35 unknown(0) TCGA-ER-A193-06 17 48266114 48266114 G A COL1A1 Missense_Mutation p.P1030S 0.44 unknown(0) TCGA-ER-A193-06 17 48615508 48615508 G A EPN3 Missense_Mutation p.E211K 0.12 deleterious(0) possibly_damaging(0.861) TCGA-ER-A193-06 17 48765080 48765080 G A ABCC3 Missense_Mutation p.M1488I 0.31 tolerated(0.05) benign(0.023) TCGA-ER-A193-06 17 51900977 51900977 C T KIF2B Missense_Mutation p.R195C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 17 53798111 53798111 C T TMEM100 Nonsense_Mutation p.W107* 0.19 TCGA-ER-A193-06 17 5383830 5383830 G A DERL2 Nonsense_Mutation p.R134* 0.17 TCGA-ER-A193-06 17 5383831 5383831 G A DERL2 Silent p.S133S 0.17 TCGA-ER-A193-06 17 56389063 56389063 C T BZRAP1 Missense_Mutation p.D984N 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 17 56620146 56620146 G A C17orf47 Missense_Mutation p.P468S 0.17 tolerated(0.16) probably_damaging(0.932) TCGA-ER-A193-06 17 57761064 57761064 A G CLTC Missense_Mutation p.M1424V 0.23 tolerated(0.39) benign(0) TCGA-ER-A193-06 17 58134512 58134512 G A HEATR6 Missense_Mutation p.S659F 0.13 deleterious(0) probably_damaging(0.99) TCGA-ER-A193-06 17 58988023 58988023 T G BCAS3 Missense_Mutation p.I318S 0.14 deleterious(0) benign(0.305) TCGA-ER-A193-06 17 60038263 60038263 T C MED13 Silent p.L1815L 0.12 TCGA-ER-A193-06 17 61958410 61958410 C T GH2 Silent p.R90R 0.18 TCGA-ER-A193-06 17 62020281 62020281 C T SCN4A Missense_Mutation p.G1398E 0.28 deleterious(0.01) possibly_damaging(0.862) TCGA-ER-A193-06 17 62568040 62568040 G A SMURF2 Missense_Mutation p.P298S 0.23 deleterious(0.01) benign(0.066) TCGA-ER-A193-06 17 64881232 64881232 G A CACNG5 Missense_Mutation p.D235N 0.20 tolerated(0.21) benign(0.065) TCGA-ER-A193-06 17 65074347 65074347 C T HELZ 3'UTR 0.22 TCGA-ER-A193-06 17 67017945 67017945 G A ABCA9 Missense_Mutation p.S780F 0.34 deleterious(0) possibly_damaging(0.878) TCGA-ER-A193-06 17 67178296 67178296 G A ABCA10 Missense_Mutation p.R923C 0.27 tolerated(0.19) benign(0.401) TCGA-ER-A193-06 17 6930094 6930094 C T BCL6B Silent p.S375S 0.45 TCGA-ER-A193-06 17 6930095 6930095 C T BCL6B Missense_Mutation p.R376C 0.45 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 17 7150120 7150120 A C CTDNEP1 Missense_Mutation p.F117C 0.22 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 17 72937888 72937888 G A OTOP3 Silent p.G158G 0.25 TCGA-ER-A193-06 17 72943385 72943385 G A OTOP3 Missense_Mutation p.E479K 0.48 tolerated(0.08) benign(0.032) TCGA-ER-A193-06 17 73728296 73728296 G A ITGB4 Missense_Mutation p.G477E 0.33 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 17 73780818 73780818 G A UNK 5'Flank 0.32 TCGA-ER-A193-06 17 73818612 73818612 C T UNK Missense_Mutation p.S631F 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A193-06 17 73910122 73910122 C T FBF1 Missense_Mutation p.E986K 0.41 tolerated(0.28) benign(0) TCGA-ER-A193-06 17 74019684 74019684 C T EVPL Missense_Mutation p.G84S 0.44 tolerated(0.37) benign(0.132) TCGA-ER-A193-06 17 7559239 7559239 C T ATP1B2 3'UTR 0.45 TCGA-ER-A193-06 17 76498998 76498998 C T DNAH17 Silent p.R1680R 0.11 TCGA-ER-A193-06 17 76498999 76498999 C T DNAH17 Missense_Mutation p.R1680K 0.11 probably_damaging(0.922) TCGA-ER-A193-06 17 76522762 76522762 C T DNAH17 Missense_Mutation p.D1228N 0.32 benign(0.095) TCGA-ER-A193-06 17 7702555 7702555 C T DNAH2 Silent p.P2898P 0.15 TCGA-ER-A193-06 17 7797852 7797852 C T CHD3 Missense_Mutation p.R458C 0.21 possibly_damaging(0.898) TCGA-ER-A193-06 17 78058567 78058567 G A CCDC40 Missense_Mutation p.G672D 0.39 deleterious(0.02) probably_damaging(0.916) TCGA-ER-A193-06 17 78318516 78318516 C T RNF213 Silent p.F2127F 0.13 TCGA-ER-A193-06 17 79220107 79220107 G A SLC38A10 Missense_Mutation p.P870L 0.39 tolerated(0.12) benign(0.096) TCGA-ER-A193-06 17 79517625 79517625 C T C17orf70 Missense_Mutation p.E299K 0.20 tolerated(0.13) benign(0.242) TCGA-ER-A193-06 17 80159600 80159600 T C CCDC57 Missense_Mutation p.Y74C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 17 80320597 80320597 C T TEX19 3'UTR 0.62 TCGA-ER-A193-06 17 80828236 80828236 C T TBCD Silent p.P485P 0.32 TCGA-ER-A193-06 17 80847546 80847546 C T TBCD Silent p.A512A 0.36 TCGA-ER-A193-06 17 8790920 8790920 C T PIK3R5 Missense_Mutation p.G566E 0.57 tolerated(0.32) benign(0.009) TCGA-ER-A193-06 17 9683345 9683345 G A DHRS7C Missense_Mutation p.T93I 0.39 tolerated(0.08) possibly_damaging(0.821) TCGA-ER-A193-06 18 120727 120727 G A ROCK1P1 RNA 0.17 TCGA-ER-A193-06 18 21116700 21116700 A G NPC1 Missense_Mutation p.I1061T 0.44 deleterious(0) benign(0.297) TCGA-ER-A193-06 18 21137137 21137137 G A NPC1 Missense_Mutation p.S300F 0.24 deleterious(0.01) possibly_damaging(0.655) TCGA-ER-A193-06 18 21479405 21479405 G A LAMA3 Missense_Mutation p.R1997K 0.39 benign(0.008) TCGA-ER-A193-06 18 21530123 21530123 G T LAMA3 Missense_Mutation p.K3214N 0.28 possibly_damaging(0.857) TCGA-ER-A193-06 18 28598670 28598670 C T DSC3 Missense_Mutation p.D347N 0.17 deleterious(0) possibly_damaging(0.619) TCGA-ER-A193-06 18 28914018 28914018 T A DSG1 Missense_Mutation p.N286K 0.29 deleterious(0.01) benign(0.044) TCGA-ER-A193-06 18 28966657 28966657 G A DSG4 Missense_Mutation p.E31K 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A193-06 18 28989458 28989458 G A DSG4 Silent p.Q659Q 0.25 TCGA-ER-A193-06 18 29111134 29111134 G A DSG2 Missense_Mutation p.S400N 0.22 tolerated(0.29) benign(0.345) TCGA-ER-A193-06 18 30350077 30350077 C T KLHL14 Missense_Mutation p.V160I 0.17 deleterious(0.03) probably_damaging(0.935) TCGA-ER-A193-06 18 31325250 31325250 G A ASXL3 Missense_Mutation p.G1813E 0.16 probably_damaging(0.952) TCGA-ER-A193-06 18 320042 320042 C T COLEC12 3'UTR 0.36 TCGA-ER-A193-06 18 34398865 34398865 A G TPGS2 Missense_Mutation p.W53R 0.33 deleterious(0.01) benign(0.315) TCGA-ER-A193-06 18 3534325 3534325 C T DLGAP1 Silent p.E782E 0.38 TCGA-ER-A193-06 18 3742415 3742415 C T DLGAP1 Missense_Mutation p.D424N 0.19 tolerated(0.13) benign(0.312) TCGA-ER-A193-06 18 40323574 40323574 C T RIT2 Missense_Mutation p.E180K 0.31 deleterious(0.04) probably_damaging(0.975) TCGA-ER-A193-06 18 43702488 43702488 C T HAUS1 Missense_Mutation p.R178C 0.45 deleterious(0) probably_damaging(0.959) TCGA-ER-A193-06 18 43705713 43705713 C T HAUS1 Missense_Mutation p.P248S 0.42 deleterious(0.01) probably_damaging(0.921) TCGA-ER-A193-06 18 45566737 45566737 A G ZBTB7C Silent p.L248L 0.26 TCGA-ER-A193-06 18 46284741 46284741 T A CTIF Missense_Mutation p.S346T 0.36 deleterious(0) probably_damaging(0.961) TCGA-ER-A193-06 18 47511087 47511087 C T MYO5B Splice_Site p.X316_splice 0.17 TCGA-ER-A193-06 18 47563277 47563277 C T MYO5B Missense_Mutation p.G133E 0.37 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 18 480727 480727 G A COLEC12 Missense_Mutation p.S13F 0.21 deleterious(0) possibly_damaging(0.831) TCGA-ER-A193-06 18 48434450 48434450 A G ME2 Silent p.L42L 0.13 TCGA-ER-A193-06 18 50936947 50936947 C T DCC Nonsense_Mutation p.R1021* 0.35 TCGA-ER-A193-06 18 51858177 51858177 G A STARD6 Missense_Mutation p.S107F 0.30 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 18 52609970 52609970 T A CCDC68 Missense_Mutation p.D18V 0.35 deleterious(0.04) possibly_damaging(0.89) TCGA-ER-A193-06 18 54814936 54814936 C T BOD1L2 Silent p.I131I 0.13 TCGA-ER-A193-06 18 55024225 55024225 C T ST8SIA3 Silent p.H128H 0.13 TCGA-ER-A193-06 18 57103257 57103257 G A CCBE1 Silent p.F368F 0.34 TCGA-ER-A193-06 18 59483483 59483483 C T RNF152 Missense_Mutation p.D72N 0.13 deleterious(0) probably_damaging(0.985) TCGA-ER-A193-06 18 59483548 59483548 C G RNF152 Missense_Mutation p.R50P 0.12 tolerated(0.11) probably_damaging(0.998) TCGA-ER-A193-06 18 61570341 61570341 T A SERPINB2 Missense_Mutation p.F350L 0.20 tolerated(0.06) possibly_damaging(0.771) TCGA-ER-A193-06 18 61654452 61654452 C T SERPINB8 Silent p.F355F 0.16 TCGA-ER-A193-06 18 63547807 63547807 G A CDH7 Missense_Mutation p.D679N 0.33 tolerated(0.19) benign(0.407) TCGA-ER-A193-06 18 65180052 65180052 G A DSEL Silent p.V608V 0.52 TCGA-ER-A193-06 18 67692058 67692058 G A RTTN Silent p.V1950V 0.35 TCGA-ER-A193-06 18 7036045 7036045 C T LAMA1 Missense_Mutation p.D594N 0.12 deleterious(0.05) benign(0.192) TCGA-ER-A193-06 18 7042163 7042163 G A LAMA1 Silent p.L414L 0.41 TCGA-ER-A193-06 18 8824715 8824715 C T SOGA2 Silent p.S1069S 0.48 TCGA-ER-A193-06 18 9257666 9257666 C T ANKRD12 Silent p.S1467S 0.20 TCGA-ER-A193-06 18 9258199 9258199 T G ANKRD12 Missense_Mutation p.L1645W 0.23 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-ER-A193-06 18 9886722 9886722 C T TXNDC2 Silent p.A82A 0.31 TCGA-ER-A193-06 19 10431579 10431579 G A RAVER1 Missense_Mutation p.P525S 0.21 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 19 10449690 10449690 C T ICAM3 Intron 0.24 TCGA-ER-A193-06 19 10577709 10577709 C T PDE4A Silent p.P691P 0.20 TCGA-ER-A193-06 19 10578097 10578097 C T PDE4A Missense_Mutation p.L821F 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-ER-A193-06 19 10792728 10792728 C T ILF3 Missense_Mutation p.P414S 0.31 deleterious(0.05) probably_damaging(0.992) TCGA-ER-A193-06 19 10792729 10792729 C T ILF3 Missense_Mutation p.P414L 0.32 deleterious(0.04) possibly_damaging(0.689) TCGA-ER-A193-06 19 11453736 11453736 G A TMEM205 Missense_Mutation p.R109C 0.27 tolerated(0.1) benign(0.051) TCGA-ER-A193-06 19 11453737 11453737 G A TMEM205 Silent p.P108P 0.27 TCGA-ER-A193-06 19 11569055 11569055 C T ELAVL3 Silent p.E178E 0.22 TCGA-ER-A193-06 19 11917364 11917364 C T ZNF491 Missense_Mutation p.S199F 0.27 tolerated(0.7) benign(0.016) TCGA-ER-A193-06 19 12089398 12089398 G A ZNF763 Missense_Mutation p.R223K 0.35 deleterious(0.05) benign(0.158) TCGA-ER-A193-06 19 12126465 12126465 G A ZNF433 Missense_Mutation p.S406F 0.31 tolerated(0.69) possibly_damaging(0.603) TCGA-ER-A193-06 19 12991617 12991617 C A DNASE2 Missense_Mutation p.K115N 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 13007120 13007120 C T GCDH Missense_Mutation p.S246L 0.32 deleterious_low_confidence(0) benign(0.018) TCGA-ER-A193-06 19 13084474 13084474 G A DAND5 3'UTR 0.32 TCGA-ER-A193-06 19 13414615 13414615 G A CACNA1A Silent p.S690S 0.31 TCGA-ER-A193-06 19 14826950 14826950 T C ZNF333 Silent p.A209A 0.37 TCGA-ER-A193-06 19 1487053 1487053 C T PCSK4 Silent p.G289G 0.31 TCGA-ER-A193-06 19 15053166 15053166 A T OR7C2 Missense_Mutation p.Y289F 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A193-06 19 15053167 15053167 C T OR7C2 Silent p.Y289Y 0.25 TCGA-ER-A193-06 19 15164410 15164410 G A CASP14 Missense_Mutation p.E49K 0.23 tolerated(0.24) benign(0.015) TCGA-ER-A193-06 19 15569364 15569364 G A RASAL3 Silent p.L255L 0.28 TCGA-ER-A193-06 19 15760723 15760723 G A CYP4F3 Silent p.E216E 0.29 TCGA-ER-A193-06 19 15770061 15770061 G A CYP4F3 Missense_Mutation p.E477K 0.16 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 19 15807310 15807310 C T CYP4F12 Missense_Mutation p.S462F 0.31 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 19 15852893 15852893 C T OR10H3 Missense_Mutation p.P231S 0.31 tolerated(0.08) possibly_damaging(0.687) TCGA-ER-A193-06 19 15989715 15989715 C T CYP4F2 Missense_Mutation p.E477K 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 19 15990703 15990703 C T CYP4F2 Missense_Mutation p.D374N 0.26 deleterious(0) possibly_damaging(0.751) TCGA-ER-A193-06 19 16178477 16178477 A G TPM4 Missense_Mutation p.K15E 0.23 deleterious(0) benign(0.402) TCGA-ER-A193-06 19 16918651 16918651 G T NWD1 Missense_Mutation p.D1331Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 19 17476392 17476392 G A PLVAP Silent p.I294I 0.27 TCGA-ER-A193-06 19 17735681 17735681 G A UNC13A Missense_Mutation p.T1385I 0.59 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A193-06 19 1783131 1783131 C T ATP8B3 Missense_Mutation p.G1267S 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A193-06 19 17922701 17922701 G A B3GNT3 Missense_Mutation p.D297N 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 18001774 18001774 G A SLC5A5 Silent p.K577K 0.25 TCGA-ER-A193-06 19 18193031 18193031 G A IL12RB1 Silent p.S56S 0.41 TCGA-ER-A193-06 19 18274135 18274135 G T PIK3R2 Missense_Mutation p.Q451H 0.30 deleterious(0.03) benign(0.172) TCGA-ER-A193-06 19 18710608 18710608 G A CRLF1 Missense_Mutation p.S55F 0.42 deleterious(0) probably_damaging(0.926) TCGA-ER-A193-06 19 18971235 18971235 C T UPF1 Missense_Mutation p.S763F 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 19338458 19338458 G A NCAN Missense_Mutation p.V677M 0.31 tolerated(0.22) benign(0.051) TCGA-ER-A193-06 19 19416738 19416738 G A SUGP1 Missense_Mutation p.P153L 0.28 deleterious(0) probably_damaging(0.965) TCGA-ER-A193-06 19 21910166 21910166 G A ZNF100 Silent p.P316P 0.32 TCGA-ER-A193-06 19 22363955 22363955 C T ZNF676 Silent p.K188K 0.36 TCGA-ER-A193-06 19 22939518 22939518 C T ZNF99 3'Flank 0.26 TCGA-ER-A193-06 19 22940058 22940058 G A ZNF99 3'Flank 0.24 TCGA-ER-A193-06 19 24102058 24102058 C T ZNF726 Intron 0.35 TCGA-ER-A193-06 19 31039043 31039043 G A ZNF536 Silent p.R839R 0.32 TCGA-ER-A193-06 19 32927424 32927424 T G DPY19L3 Missense_Mutation p.I134S 0.32 deleterious(0) probably_damaging(0.976) TCGA-ER-A193-06 19 33324075 33324075 C T SLC7A9 Missense_Mutation p.G460E 0.27 tolerated(0.17) benign(0.003) TCGA-ER-A193-06 19 34838893 34838893 C T KIAA0355 Missense_Mutation p.P878L 0.33 tolerated_low_confidence(0.13) benign(0.002) TCGA-ER-A193-06 19 3547919 3547919 G A MFSD12 Missense_Mutation p.P255L 0.67 probably_damaging(0.968) TCGA-ER-A193-06 19 35741242 35741242 C T LSR Missense_Mutation p.T93I 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-ER-A193-06 19 36168933 36168933 G A UPK1A 3'UTR 0.21 TCGA-ER-A193-06 19 36223782 36223782 C T KMT2B Missense_Mutation p.S2111L 0.15 possibly_damaging(0.885) TCGA-ER-A193-06 19 36364555 36364555 G A APLP1 Nonsense_Mutation p.W332* 0.28 TCGA-ER-A193-06 19 36530863 36530863 G A THAP8 Missense_Mutation p.R87W 0.24 tolerated(0.06) benign(0.417) TCGA-ER-A193-06 19 36530864 36530864 G A THAP8 Silent p.S86S 0.26 TCGA-ER-A193-06 19 37038114 37038114 G A ZNF529 Missense_Mutation p.P449L 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 19 37382511 37382511 A C ZNF829 Missense_Mutation p.N475K 0.48 tolerated(0.19) probably_damaging(0.993) TCGA-ER-A193-06 19 3747981 3747981 C T TJP3 Missense_Mutation p.P847S 0.39 tolerated(0.35) benign(0.008) TCGA-ER-A193-06 19 37618294 37618294 C T ZNF420 Missense_Mutation p.S134F 0.23 deleterious(0) benign(0.029) TCGA-ER-A193-06 19 37642751 37642751 G A ZNF585A Missense_Mutation p.H629Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 19 37643778 37643778 G A ZNF585A Silent p.L286L 0.26 TCGA-ER-A193-06 19 37904033 37904033 G A ZNF569 Silent p.F509F 0.21 TCGA-ER-A193-06 19 38597184 38597184 C T SIPA1L3 Silent p.S679S 0.27 TCGA-ER-A193-06 19 38858385 38858385 G A CATSPERG Missense_Mutation p.E967K 0.31 tolerated(0.05) possibly_damaging(0.502) TCGA-ER-A193-06 19 38858759 38858759 A T CATSPERG Missense_Mutation p.H1001L 0.24 tolerated(0.37) benign(0.402) TCGA-ER-A193-06 19 38861407 38861407 C T CATSPERG Missense_Mutation p.A1152V 0.30 tolerated_low_confidence(0.39) possibly_damaging(0.682) TCGA-ER-A193-06 19 38996033 38996033 G A RYR1 Missense_Mutation p.E2799K 0.36 benign(0.082) TCGA-ER-A193-06 19 39008051 39008051 G A RYR1 Silent p.L3246L 0.22 TCGA-ER-A193-06 19 39034477 39034477 C T RYR1 Silent p.L3992L 0.31 TCGA-ER-A193-06 19 3907802 3907802 G A ATCAY Silent p.T143T 0.34 TCGA-ER-A193-06 19 39293030 39293030 G A LGALS4 Silent p.F195F 0.31 TCGA-ER-A193-06 19 39735076 39735076 C T IFNL3 Nonsense_Mutation p.W80* 0.23 TCGA-ER-A193-06 19 39879204 39879204 C T PAF1 Missense_Mutation p.D285N 0.39 deleterious(0.03) benign(0.324) TCGA-ER-A193-06 19 40434209 40434209 C T FCGBP Silent p.L20L 0.20 TCGA-ER-A193-06 19 40720917 40720917 C T MAP3K10 Silent p.P861P 0.41 TCGA-ER-A193-06 19 41129586 41129586 T C LTBP4 Missense_Mutation p.C1278R 0.34 deleterious(0) possibly_damaging(0.555) TCGA-ER-A193-06 19 41387627 41387627 G A CYP2A7 Silent p.T70T 0.26 TCGA-ER-A193-06 19 41515906 41515906 C T CYP2B6 Missense_Mutation p.S277F 0.37 tolerated(0.05) benign(0.086) TCGA-ER-A193-06 19 42341250 42341250 G A LYPD4 Silent p.V236V 0.29 TCGA-ER-A193-06 19 42479941 42479941 A T ATP1A3 Silent p.I714I 0.28 TCGA-ER-A193-06 19 42507603 42507615 AACCTGGAGGGCG - GRIK5 Splice_Site p.X798_splice 0.16 TCGA-ER-A193-06 19 42818443 42818443 G A TMEM145 Missense_Mutation p.R47K 0.33 deleterious(0) possibly_damaging(0.685) TCGA-ER-A193-06 19 42931082 42931082 C T LIPE Missense_Mutation p.E74K 0.32 tolerated_low_confidence(0.05) benign(0.002) TCGA-ER-A193-06 19 43258396 43258396 G A PSG8 3'UTR 0.33 TCGA-ER-A193-06 19 43259246 43259246 G A PSG8 Silent p.I294I 0.22 TCGA-ER-A193-06 19 43406599 43406599 C T PSG6 3'Flank 0.16 TCGA-ER-A193-06 19 43430647 43430647 C T PSG7 Missense_Mutation p.E311K 0.33 tolerated(0.29) possibly_damaging(0.739) TCGA-ER-A193-06 19 43430737 43430737 G A PSG7 Missense_Mutation p.P281S 0.29 tolerated(0.08) benign(0.115) TCGA-ER-A193-06 19 43674288 43674288 G A PSG5 Missense_Mutation p.P323S 0.28 tolerated(0.11) benign(0.01) TCGA-ER-A193-06 19 43866377 43866377 G A CD177 3'UTR 0.32 TCGA-ER-A193-06 19 43922487 43922487 C T TEX101 Missense_Mutation p.P248S 0.31 tolerated(1) benign(0.007) TCGA-ER-A193-06 19 44622362 44622362 G A ZNF225 Missense_Mutation p.V13M 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 44831861 44831861 G A ZNF112 Missense_Mutation p.H823Y 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 45186867 45186867 C T CEACAM19 3'UTR 0.38 TCGA-ER-A193-06 19 45295716 45295716 T C CBLC Missense_Mutation p.V361A 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A193-06 19 45988905 45988905 G A RTN2 3'UTR 0.27 TCGA-ER-A193-06 19 45988906 45988906 G A RTN2 3'UTR 0.29 TCGA-ER-A193-06 19 45997524 45997524 C T RTN2 Silent p.E238E 0.33 TCGA-ER-A193-06 19 46280717 46280717 G A DMPK Silent p.F348F 0.27 TCGA-ER-A193-06 19 46282606 46282606 G A DMPK Silent p.F126F 0.38 TCGA-ER-A193-06 19 46289715 46289715 C T DMWD Missense_Mutation p.D347N 0.26 deleterious(0) possibly_damaging(0.524) TCGA-ER-A193-06 19 46307553 46307553 G A RSPH6A Missense_Mutation p.S537F 0.41 deleterious(0) probably_damaging(0.928) TCGA-ER-A193-06 19 46308182 46308182 G A RSPH6A Silent p.F327F 0.36 TCGA-ER-A193-06 19 46319823 46319823 G A SYMPK Missense_Mutation p.P1091S 0.22 tolerated(0.26) benign(0.395) TCGA-ER-A193-06 19 46375568 46375568 G A FOXA3 Missense_Mutation p.G102E 0.37 tolerated(0.26) benign(0.002) TCGA-ER-A193-06 19 47423263 47423263 C T ARHGAP35 Missense_Mutation p.P444L 0.36 tolerated(0.64) possibly_damaging(0.837) TCGA-ER-A193-06 19 47423875 47423875 T C ARHGAP35 Missense_Mutation p.V648A 0.32 tolerated(0.55) possibly_damaging(0.863) TCGA-ER-A193-06 19 47885322 47885322 C T DHX34 Silent p.F1128F 0.36 TCGA-ER-A193-06 19 4792693 4792693 C T FEM1A Missense_Mutation p.S276F 0.17 tolerated(0.68) benign(0) TCGA-ER-A193-06 19 4793084 4793084 C T FEM1A Silent p.F406F 0.33 TCGA-ER-A193-06 19 49143141 49143141 C T CA11 Splice_Site p.X158_splice 0.21 TCGA-ER-A193-06 19 49671177 49671177 C T TRPM4 Missense_Mutation p.L91F 0.36 deleterious(0) probably_damaging(0.923) TCGA-ER-A193-06 19 50248617 50248617 C T TSKS Silent p.Q343Q 0.50 TCGA-ER-A193-06 19 50249796 50249796 C T TSKS Missense_Mutation p.R308Q 0.26 deleterious(0.04) possibly_damaging(0.809) TCGA-ER-A193-06 19 50331794 50331794 C G MED25 Missense_Mutation p.R132G 0.35 deleterious(0) probably_damaging(0.982) TCGA-ER-A193-06 19 50380940 50380940 G A AKT1S1 5'UTR 0.23 TCGA-ER-A193-06 19 50455607 50455607 C T SIGLEC11 Missense_Mutation p.G566R 0.23 deleterious(0) probably_damaging(0.96) TCGA-ER-A193-06 19 50462659 50462659 T C SIGLEC11 Missense_Mutation p.R339G 0.31 tolerated(0.06) benign(0.208) TCGA-ER-A193-06 19 50958842 50958842 C T MYBPC2 Missense_Mutation p.P760L 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 50967675 50967675 G A MYBPC2 Missense_Mutation p.G1101R 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 19 51274868 51274868 G A GPR32 Silent p.R337R 0.41 TCGA-ER-A193-06 19 51323241 51323241 C T KLK1 Missense_Mutation p.D183N 0.38 tolerated(0.2) benign(0.04) TCGA-ER-A193-06 19 51381851 51381851 A G KLK2 3'UTR 0.29 TCGA-ER-A193-06 19 51528040 51528040 C T KLK11 Silent p.G49G 0.44 TCGA-ER-A193-06 19 51631291 51631291 C T SIGLEC9 Silent p.F367F 0.36 TCGA-ER-A193-06 19 51729138 51729138 C T CD33 Silent p.S166S 0.26 TCGA-ER-A193-06 19 51875825 51875825 G A NKG7 5'UTR 0.50 TCGA-ER-A193-06 19 51918534 51918534 C T SIGLEC10 Missense_Mutation p.E411K 0.28 deleterious(0.01) possibly_damaging(0.644) TCGA-ER-A193-06 19 51957944 51957944 A G SIGLEC8 Missense_Mutation p.F381S 0.27 deleterious(0.02) possibly_damaging(0.889) TCGA-ER-A193-06 19 51981793 51981793 G A CEACAM18 Missense_Mutation p.R27Q 0.42 tolerated_low_confidence(0.64) benign(0) TCGA-ER-A193-06 19 51986304 51986304 C T CEACAM18 Missense_Mutation p.P297L 0.32 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 19 52002469 52002469 G A SIGLEC12 Missense_Mutation p.P364S 0.27 tolerated(0.43) benign(0.04) TCGA-ER-A193-06 19 52033984 52033984 G A SIGLEC6 Silent p.F219F 0.38 TCGA-ER-A193-06 19 52537010 52537010 A T ZNF432 Missense_Mutation p.I641N 0.24 tolerated(0.17) possibly_damaging(0.828) TCGA-ER-A193-06 19 52824896 52824896 C T ZNF480 Silent p.S131S 0.23 TCGA-ER-A193-06 19 53571299 53571299 G A ZNF160 3'UTR 0.33 TCGA-ER-A193-06 19 536311 536311 A G CDC34 Silent p.S111S 0.25 TCGA-ER-A193-06 19 53854516 53854516 C T ZNF845 Silent p.F196F 0.22 TCGA-ER-A193-06 19 53958194 53958194 C T ZNF761 RNA 0.40 TCGA-ER-A193-06 19 53994127 53994127 C T ZNF813 Missense_Mutation p.S214F 0.25 deleterious(0.01) possibly_damaging(0.832) TCGA-ER-A193-06 19 54611388 54611388 G A TFPT Missense_Mutation p.P196L 0.24 tolerated(0.13) benign(0.009) TCGA-ER-A193-06 19 54611389 54611389 G A TFPT Missense_Mutation p.P196S 0.25 tolerated(0.1) benign(0.202) TCGA-ER-A193-06 19 55143641 55143641 C T LILRB1 Missense_Mutation p.P205L 0.21 deleterious(0.01) possibly_damaging(0.471) TCGA-ER-A193-06 19 55147030 55147030 G A LILRB1 Silent p.Q541Q 0.32 TCGA-ER-A193-06 19 55178186 55178186 G A LILRB4 Missense_Mutation p.E343K 0.28 tolerated(0.08) possibly_damaging(0.874) TCGA-ER-A193-06 19 55247503 55247503 G A KIR3DL3 Silent p.Q391Q 0.55 TCGA-ER-A193-06 19 55512191 55512191 C T NLRP2 Silent p.N1038N 0.26 TCGA-ER-A193-06 19 56244087 56244087 G A NLRP9 Silent p.S370S 0.25 TCGA-ER-A193-06 19 56300601 56300601 T A NLRP11 Missense_Mutation p.N893I 0.35 deleterious(0) possibly_damaging(0.809) TCGA-ER-A193-06 19 56370281 56370281 A T NLRP4 Missense_Mutation p.N508Y 0.37 deleterious(0.01) benign(0.212) TCGA-ER-A193-06 19 56465912 56465912 C T NLRP8 Missense_Mutation p.P163L 0.25 tolerated(0.75) benign(0.008) TCGA-ER-A193-06 19 56466710 56466710 G A NLRP8 Missense_Mutation p.R429Q 0.31 tolerated(0.35) benign(0.003) TCGA-ER-A193-06 19 56466711 56466711 G A NLRP8 Silent p.R429R 0.31 TCGA-ER-A193-06 19 56485109 56485109 G A NLRP8 Missense_Mutation p.E876K 0.30 tolerated(0.3) benign(0.077) TCGA-ER-A193-06 19 56539225 56539225 G A NLRP5 Silent p.R542R 0.22 TCGA-ER-A193-06 19 57327958 57327958 G A PEG3 Nonsense_Mutation p.Q618* 0.23 TCGA-ER-A193-06 19 57640389 57640389 G A USP29 Missense_Mutation p.D116N 0.25 deleterious(0.01) possibly_damaging(0.454) TCGA-ER-A193-06 19 57640998 57640998 C T USP29 Missense_Mutation p.P319S 0.32 tolerated(0.12) possibly_damaging(0.524) TCGA-ER-A193-06 19 57642045 57642045 A G USP29 Missense_Mutation p.K668E 0.34 tolerated(0.19) benign(0.019) TCGA-ER-A193-06 19 58016719 58016719 G A ZNF773 Silent p.E71E 0.27 TCGA-ER-A193-06 19 58118507 58118507 G A ZNF530 Silent p.R538R 0.28 TCGA-ER-A193-06 19 58320092 58320092 G A ZNF552 Silent p.L180L 0.29 TCGA-ER-A193-06 19 58370024 58370024 C A CTD-2583A14.10 Missense_Mutation p.P82T 0.21 deleterious(0.02) possibly_damaging(0.48) TCGA-ER-A193-06 19 58579610 58579610 C T ZNF135 Silent p.S610S 0.22 TCGA-ER-A193-06 19 58721332 58721332 C T ZNF274 Missense_Mutation p.P248S 0.38 deleterious(0.04) benign(0.099) TCGA-ER-A193-06 19 58755371 58755371 C - ZNF544 5'UTR 0.25 TCGA-ER-A193-06 19 58966440 58966440 C T ZNF324B Intron 0.29 TCGA-ER-A193-06 19 6389464 6389464 G A GTF2F1 Missense_Mutation p.S106L 0.35 tolerated(0.05) benign(0.019) TCGA-ER-A193-06 19 6475321 6475321 G A DENND1C Silent p.L339L 0.32 TCGA-ER-A193-06 19 6709694 6709694 C T C3 Splice_Site p.X615_splice 0.25 TCGA-ER-A193-06 19 6760924 6760924 C T SH2D3A Silent p.V48V 0.29 TCGA-ER-A193-06 19 6924812 6924812 C T EMR1 Silent p.L639L 0.32 TCGA-ER-A193-06 19 6974614 6974614 C T EMR4P RNA 0.30 TCGA-ER-A193-06 19 7625908 7625908 C T PNPLA6 Silent p.A1285A 0.19 TCGA-ER-A193-06 19 7712745 7712745 C T STXBP2 3'UTR 0.30 TCGA-ER-A193-06 19 8122782 8122782 C T CCL25 Silent p.S141S 0.32 TCGA-ER-A193-06 19 8175972 8175972 C A FBN3 Missense_Mutation p.D1394Y 0.20 tolerated(0.06) benign(0.285) TCGA-ER-A193-06 19 8175973 8175973 A G FBN3 Silent p.F1393F 0.21 TCGA-ER-A193-06 19 8550606 8550607 TC G HNRNPM Frame_Shift_Del p.S432Afs*96 0.20 TCGA-ER-A193-06 19 8620543 8620543 G A MYO1F Silent p.F47F 0.31 TCGA-ER-A193-06 19 8808763 8808763 A G ACTL9 Missense_Mutation p.F97L 0.20 tolerated(0.14) possibly_damaging(0.484) TCGA-ER-A193-06 19 8953474 8953474 G A MBD3L1 Silent p.T40T 0.28 TCGA-ER-A193-06 19 8973575 8973575 G A MUC16 Silent p.F14247F 0.31 TCGA-ER-A193-06 19 8996489 8996489 C T MUC16 Missense_Mutation p.E13695K 0.39 possibly_damaging(0.74) TCGA-ER-A193-06 19 9003586 9003586 C T MUC16 Missense_Mutation p.E13352K 0.34 probably_damaging(0.991) TCGA-ER-A193-06 19 9049121 9049121 C T MUC16 Nonsense_Mutation p.W10837* 0.27 TCGA-ER-A193-06 19 9054339 9054339 C T MUC16 Missense_Mutation p.G10428D 0.29 benign(0.007) TCGA-ER-A193-06 19 9057040 9057040 G A MUC16 Missense_Mutation p.P10136S 0.31 benign(0) TCGA-ER-A193-06 19 9058908 9058908 T G MUC16 Missense_Mutation p.H9513P 0.34 unknown(0) TCGA-ER-A193-06 19 9060306 9060306 C T MUC16 Missense_Mutation p.S9047N 0.24 unknown(0) TCGA-ER-A193-06 19 9062673 9062673 G A MUC16 Missense_Mutation p.S8258F 0.29 unknown(0) TCGA-ER-A193-06 19 9064721 9064721 G A MUC16 Silent p.S7575S 0.29 TCGA-ER-A193-06 19 9065788 9065788 C T MUC16 Missense_Mutation p.D7220N 0.36 unknown(0) TCGA-ER-A193-06 19 9068117 9068117 C T MUC16 Silent p.R6443R 0.35 TCGA-ER-A193-06 19 9070704 9070704 G A MUC16 Missense_Mutation p.P5581L 0.28 unknown(0) TCGA-ER-A193-06 19 9074177 9074177 A T MUC16 Missense_Mutation p.F4423L 0.31 unknown(0) TCGA-ER-A193-06 19 9074179 9074179 A T MUC16 Missense_Mutation p.F4423I 0.31 unknown(0) TCGA-ER-A193-06 19 9076497 9076497 G A MUC16 Missense_Mutation p.S3650L 0.36 unknown(0) TCGA-ER-A193-06 19 9082363 9082363 G A MUC16 Missense_Mutation p.P3151L 0.31 unknown(0) TCGA-ER-A193-06 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.39 tolerated(0.43) possibly_damaging(0.602) TCGA-ER-A193-06 19 9577649 9577649 A T ZNF560 Nonsense_Mutation p.C658* 0.30 TCGA-ER-A193-06 19 9577650 9577650 C T ZNF560 Missense_Mutation p.C658Y 0.30 deleterious(0) probably_damaging(0.98) TCGA-ER-A193-06 19 9801391 9801391 G A ZNF812 Missense_Mutation p.S263F 0.29 tolerated(0.68) benign(0.01) TCGA-ER-A193-06 1 103483408 103483408 G A COL11A1 Missense_Mutation p.P461S 0.44 probably_damaging(1) TCGA-ER-A193-06 1 10460543 10460543 G A PGD Missense_Mutation p.E60K 0.38 tolerated(0.05) benign(0.037) TCGA-ER-A193-06 1 110256339 110256339 G A GSTM5 Missense_Mutation p.D106N 0.50 deleterious(0.01) probably_damaging(0.956) TCGA-ER-A193-06 1 110257571 110257571 G A GSTM5 Silent p.E121E 0.39 TCGA-ER-A193-06 1 110466382 110466382 G A CSF1 Nonsense_Mutation p.W380* 0.42 TCGA-ER-A193-06 1 110735150 110735150 T C SLC6A17 Missense_Mutation p.Y377H 0.46 tolerated(0.3) possibly_damaging(0.903) TCGA-ER-A193-06 1 11562817 11562817 C T PTCHD2 Silent p.S393S 0.33 TCGA-ER-A193-06 1 116283393 116283393 C T CASQ2 Missense_Mutation p.D126N 0.51 tolerated(0.15) probably_damaging(0.999) TCGA-ER-A193-06 1 11897408 11897408 C T CLCN6 Missense_Mutation p.P716L 0.33 tolerated(0.06) benign(0.092) TCGA-ER-A193-06 1 12704613 12704613 C T AADACL4 Silent p.F16F 0.29 TCGA-ER-A193-06 1 1273686 1273686 G A DVL1 Silent p.S465S 0.41 TCGA-ER-A193-06 1 12837224 12837224 C T PRAMEF12 Missense_Mutation p.L312F 0.32 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 1 12853663 12853663 G A PRAMEF1 Missense_Mutation p.R96K 0.27 deleterious(0.02) possibly_damaging(0.848) TCGA-ER-A193-06 1 12887152 12887152 C T PRAMEF11 Missense_Mutation p.M235I 0.26 tolerated(0.1) benign(0.009) TCGA-ER-A193-06 1 12887392 12887392 G A PRAMEF11 Silent p.I155I 0.28 TCGA-ER-A193-06 1 12939610 12939610 C T PRAMEF4 Missense_Mutation p.E398K 0.29 deleterious(0.04) benign(0.006) TCGA-ER-A193-06 1 12954674 12954674 G A PRAMEF10 Silent p.Y203Y 0.39 TCGA-ER-A193-06 1 13669048 13669048 C T PRAMEF14 Missense_Mutation p.E428K 0.24 tolerated(0.3) benign(0.23) TCGA-ER-A193-06 1 13936921 13936921 G A PDPN Missense_Mutation p.E157K 0.22 tolerated(0.11) benign(0.029) TCGA-ER-A193-06 1 1404132 1404132 A G ATAD3C 3'UTR 0.40 TCGA-ER-A193-06 1 144828544 144828544 C T NBPF9 Silent p.L604L 0.12 TCGA-ER-A193-06 1 149784973 149784973 C T HIST2H3D Silent p.S88S 0.13 TCGA-ER-A193-06 1 149883495 149883495 G A SV2A Silent p.F220F 0.19 TCGA-ER-A193-06 1 150444353 150444353 C A RPRD2 Missense_Mutation p.P977T 0.35 deleterious_low_confidence(0.01) benign(0.054) TCGA-ER-A193-06 1 150444354 150444354 C T RPRD2 Missense_Mutation p.P977L 0.35 deleterious_low_confidence(0) benign(0.155) TCGA-ER-A193-06 1 150445502 150445502 C T RPRD2 Missense_Mutation p.P1360S 0.47 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ER-A193-06 1 150672618 150672618 C T HORMAD1 Silent p.R358R 0.39 TCGA-ER-A193-06 1 151131232 151131232 A C TNFAIP8L2 Missense_Mutation p.K20T 0.31 deleterious(0.01) possibly_damaging(0.726) TCGA-ER-A193-06 1 151150580 151150580 G A VPS72 Missense_Mutation p.H202Y 0.17 tolerated(1) benign(0.102) TCGA-ER-A193-06 1 151259302 151259302 C T ZNF687 Missense_Mutation p.P179S 0.17 tolerated(0.36) benign(0.004) TCGA-ER-A193-06 1 151288331 151288331 G A PI4KB Silent p.S221S 0.18 TCGA-ER-A193-06 1 152084928 152084928 C T TCHH Silent p.K255K 0.15 TCGA-ER-A193-06 1 152129433 152129433 G A RPTN Missense_Mutation p.P48S 0.34 deleterious(0) probably_damaging(0.99) TCGA-ER-A193-06 1 152329028 152329028 C T FLG2 Missense_Mutation p.E412K 0.40 unknown(0) TCGA-ER-A193-06 1 152329534 152329534 C T FLG2 Missense_Mutation p.G243E 0.25 unknown(0) TCGA-ER-A193-06 1 152329535 152329535 C T FLG2 Missense_Mutation p.G243R 0.25 unknown(0) TCGA-ER-A193-06 1 152732718 152732718 C T KPRP Silent p.F218F 0.15 TCGA-ER-A193-06 1 152733502 152733502 C T KPRP Missense_Mutation p.P480S 0.34 deleterious(0.01) probably_damaging(0.932) TCGA-ER-A193-06 1 153320420 153320420 C T PGLYRP4 5'UTR 0.24 TCGA-ER-A193-06 1 153333238 153333238 C T S100A9 Missense_Mutation p.S90F 0.36 deleterious(0) possibly_damaging(0.809) TCGA-ER-A193-06 1 153507797 153507797 G A S100A6 Nonsense_Mutation p.Q7* 0.42 TCGA-ER-A193-06 1 153660603 153660603 G A NPR1 Missense_Mutation p.E775K 0.32 deleterious(0.02) probably_damaging(0.964) TCGA-ER-A193-06 1 153945263 153945263 T C CREB3L4 Missense_Mutation p.L196P 0.64 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 153945887 153945887 A G CREB3L4 Missense_Mutation p.T282A 0.33 tolerated(1) benign(0.002) TCGA-ER-A193-06 1 153974357 153974357 C T NUP210L Missense_Mutation p.E1679K 0.37 tolerated(0.17) benign(0.219) TCGA-ER-A193-06 1 154295498 154295498 C T AQP10 Silent p.I91I 0.17 TCGA-ER-A193-06 1 155264324 155264324 C T PKLR Missense_Mutation p.G305E 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 155721823 155721823 G A GON4L Missense_Mutation p.A2133V 0.17 tolerated(0.27) possibly_damaging(0.682) TCGA-ER-A193-06 1 1559297 1559297 G A MIB2 Missense_Mutation p.D246N 0.30 tolerated(0.24) benign(0.209) TCGA-ER-A193-06 1 156084913 156084913 G A LMNA Silent p.E68E 0.16 TCGA-ER-A193-06 1 156084914 156084914 G A LMNA Missense_Mutation p.V69M 0.16 tolerated(0.08) possibly_damaging(0.507) TCGA-ER-A193-06 1 156268622 156268622 G A VHLL Missense_Mutation p.P120L 0.30 deleterious(0.03) probably_damaging(0.919) TCGA-ER-A193-06 1 156509322 156509322 G A IQGAP3 Missense_Mutation p.P967L 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 156845919 156845919 G A NTRK1 Missense_Mutation p.G517R 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 156882687 156882687 C T PEAR1 Missense_Mutation p.R779W 0.18 deleterious(0) possibly_damaging(0.88) TCGA-ER-A193-06 1 157490868 157490868 G A FCRL5 Silent p.S818S 0.18 TCGA-ER-A193-06 1 157490960 157490960 G A FCRL5 Missense_Mutation p.H788Y 0.10 tolerated(0.06) benign(0.35) TCGA-ER-A193-06 1 15772186 15772186 C T CTRC Missense_Mutation p.T245I 0.33 tolerated(0.13) benign(0.009) TCGA-ER-A193-06 1 157801721 157801721 G A CD5L 3'UTR 0.42 TCGA-ER-A193-06 1 15808812 15808812 G A CELA2B Missense_Mutation p.E94K 0.32 deleterious(0) possibly_damaging(0.776) TCGA-ER-A193-06 1 158262655 158262655 C T CD1C Missense_Mutation p.L294F 0.17 deleterious(0) possibly_damaging(0.887) TCGA-ER-A193-06 1 158325692 158325692 G A CD1E Missense_Mutation p.G234E 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 158390030 158390030 G A OR10K2 Silent p.I209I 0.14 TCGA-ER-A193-06 1 158517200 158517200 C T OR6Y1 Silent p.R232R 0.19 TCGA-ER-A193-06 1 158582658 158582658 G A SPTA1 Silent p.F2361F 0.17 TCGA-ER-A193-06 1 158592842 158592842 C G SPTA1 Missense_Mutation p.W2017C 0.40 deleterious(0) probably_damaging(0.984) TCGA-ER-A193-06 1 15863261 15863261 C T DNAJC16 Missense_Mutation p.H176Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 158644350 158644350 C T SPTA1 Missense_Mutation p.D410N 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-ER-A193-06 1 158669785 158669785 C T OR6K2 Missense_Mutation p.D220N 0.37 deleterious(0.03) benign(0.006) TCGA-ER-A193-06 1 158725526 158725526 C T OR6K6 Silent p.I307I 0.21 TCGA-ER-A193-06 1 158746626 158746626 G A OR6N2 Missense_Mutation p.S267F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A193-06 1 15909809 15909809 G A AGMAT Silent p.S118S 0.27 TCGA-ER-A193-06 1 159166838 159166838 C T CADM3 Missense_Mutation p.L348F 0.11 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 1 160062338 160062338 C T IGSF8 Missense_Mutation p.G487E 0.44 tolerated(0.69) benign(0.08) TCGA-ER-A193-06 1 160062789 160062789 G A IGSF8 Nonsense_Mutation p.R413* 0.45 TCGA-ER-A193-06 1 160098476 160098476 G A ATP1A2 Missense_Mutation p.R351Q 0.15 tolerated(0.06) benign(0.012) TCGA-ER-A193-06 1 160259918 160259918 G A COPA 3'UTR 0.36 TCGA-ER-A193-06 1 160389337 160389337 C T VANGL2 Silent p.F246F 0.38 TCGA-ER-A193-06 1 160519728 160519728 G A CD84 Silent p.S317S 0.15 TCGA-ER-A193-06 1 160853271 160853271 G A ITLN1 Missense_Mutation p.P35L 0.30 tolerated(0.33) benign(0.036) TCGA-ER-A193-06 1 161128340 161128340 C T UFC1 3'UTR 0.31 TCGA-ER-A193-06 1 161133953 161133953 G A USP21 Splice_Site p.X407_splice 0.17 TCGA-ER-A193-06 1 161496303 161496303 C T HSPA6 Missense_Mutation p.P619S 0.17 tolerated_low_confidence(0.19) benign(0) TCGA-ER-A193-06 1 162336865 162336865 G A RP11-565P22.6 Missense_Mutation p.E63K 0.21 tolerated(0.06) benign(0.016) TCGA-ER-A193-06 1 162351606 162351606 G A C1orf226 Intron 0.45 TCGA-ER-A193-06 1 163122481 163122481 G A RGS5 Silent p.F81F 0.37 TCGA-ER-A193-06 1 165619140 165619140 T C MGST3 Missense_Mutation p.F19S 0.20 tolerated(0.14) benign(0.065) TCGA-ER-A193-06 1 167042666 167042666 G A GPA33 Nonsense_Mutation p.R52* 0.12 TCGA-ER-A193-06 1 167944107 167944107 T G DCAF6 Missense_Mutation p.F98V 0.17 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 1 168282184 168282184 G A TBX19 Missense_Mutation p.G431S 0.13 tolerated_low_confidence(0.3) unknown(0) TCGA-ER-A193-06 1 1688705 1688705 G A NADK Missense_Mutation p.S207F 0.27 deleterious(0) benign(0.007) TCGA-ER-A193-06 1 16945675 16945675 G A RP5-1182A14.5 3'Flank 0.07 TCGA-ER-A193-06 1 169565372 169565372 C T SELP Missense_Mutation p.G631D 0.41 tolerated(0.16) benign(0.106) TCGA-ER-A193-06 1 169565373 169565373 C T SELP Splice_Site p.X631_splice 0.42 TCGA-ER-A193-06 1 169694893 169694893 T C SELE Missense_Mutation p.I609V 0.37 tolerated(0.07) benign(0.016) TCGA-ER-A193-06 1 169701826 169701826 C T SELE Silent p.K117K 0.10 TCGA-ER-A193-06 1 169701827 169701827 T A SELE Missense_Mutation p.K117M 0.11 deleterious(0) probably_damaging(0.99) TCGA-ER-A193-06 1 171076868 171076868 G A FMO3 Nonsense_Mutation p.W125* 0.20 TCGA-ER-A193-06 1 171079953 171079953 C T FMO3 Silent p.S214S 0.14 TCGA-ER-A193-06 1 171080030 171080030 G A FMO3 Missense_Mutation p.G240E 0.33 tolerated(0.87) benign(0.002) TCGA-ER-A193-06 1 173494046 173494046 G A SLC9C2 Missense_Mutation p.R796C 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A193-06 1 173628349 173628349 A T ANKRD45 Missense_Mutation p.L70H 0.20 deleterious(0) probably_damaging(0.992) TCGA-ER-A193-06 1 173883957 173883957 G A SERPINC1 Missense_Mutation p.P48S 0.20 deleterious(0.02) benign(0.177) TCGA-ER-A193-06 1 17431502 17431502 C T PADI2 Nonsense_Mutation p.W49* 0.37 TCGA-ER-A193-06 1 175299289 175299289 G A TNR Silent p.F1238F 0.34 TCGA-ER-A193-06 1 175306816 175306816 C G TNR Splice_Site p.X1128_splice 0.25 TCGA-ER-A193-06 1 175355175 175355175 G A TNR Silent p.F590F 0.43 TCGA-ER-A193-06 1 176659405 176659405 C T PAPPA2 Missense_Mutation p.P757L 0.35 deleterious(0.03) probably_damaging(1) TCGA-ER-A193-06 1 176661355 176661355 A T PAPPA2 Missense_Mutation p.K842M 0.36 deleterious(0) possibly_damaging(0.867) TCGA-ER-A193-06 1 176926840 176926840 G A ASTN1 Missense_Mutation p.R621C 0.29 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 1 17698794 17698794 C T PADI6 RNA 0.34 TCGA-ER-A193-06 1 177935080 177935080 A G SEC16B Silent p.A120A 0.31 TCGA-ER-A193-06 1 178834107 178834107 C T ANGPTL1 Missense_Mutation p.V269I 0.36 tolerated(0.3) benign(0.005) TCGA-ER-A193-06 1 178875917 178875917 C T RALGPS2 Missense_Mutation p.S546L 0.21 deleterious(0.03) benign(0.012) TCGA-ER-A193-06 1 179497516 179497516 G A AXDND1 Missense_Mutation p.E889K 0.35 tolerated(0.23) possibly_damaging(0.636) TCGA-ER-A193-06 1 180031385 180031385 A T CEP350 Nonsense_Mutation p.K1765* 0.21 TCGA-ER-A193-06 1 180243418 180243418 G A LHX4 Missense_Mutation p.D293N 0.21 tolerated(0.08) benign(0.073) TCGA-ER-A193-06 1 182794936 182794936 C G NPL Missense_Mutation p.I253M 0.17 deleterious(0.04) benign(0.213) TCGA-ER-A193-06 1 183711422 183711422 G A RGL1 Missense_Mutation p.E44K 0.12 tolerated(0.14) benign(0.001) TCGA-ER-A193-06 1 183885623 183885623 G A RGL1 Missense_Mutation p.D633N 0.21 tolerated(0.28) possibly_damaging(0.451) TCGA-ER-A193-06 1 186086187 186086187 G A HMCN1 Missense_Mutation p.E3875K 0.44 probably_damaging(0.994) TCGA-ER-A193-06 1 186086707 186086707 G A HMCN1 Missense_Mutation p.G3934S 0.22 probably_damaging(0.999) TCGA-ER-A193-06 1 186375259 186375259 C T C1orf27 Missense_Mutation p.P349S 0.37 tolerated(0.13) benign(0.098) TCGA-ER-A193-06 1 186415681 186415681 T A PDC Missense_Mutation p.R30S 0.21 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 1 18661444 18661444 G A IGSF21 Missense_Mutation p.D122N 0.33 tolerated(0.11) benign(0.109) TCGA-ER-A193-06 1 186646891 186646891 G A PTGS2 Missense_Mutation p.P177S 0.36 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 1 18691906 18691906 G A IGSF21 Missense_Mutation p.E244K 0.26 deleterious(0.04) benign(0.204) TCGA-ER-A193-06 1 190067114 190067114 C T BRINP3 3'UTR 0.27 TCGA-ER-A193-06 1 190067226 190067226 C T BRINP3 Silent p.R741R 0.21 TCGA-ER-A193-06 1 19181021 19181021 C T TAS1R2 Missense_Mutation p.E315K 0.24 tolerated(0.34) benign(0.059) TCGA-ER-A193-06 1 19479878 19479878 G A UBR4 Missense_Mutation p.S2250F 0.30 probably_damaging(0.929) TCGA-ER-A193-06 1 197390617 197390617 G A CRB1 Silent p.K553K 0.36 TCGA-ER-A193-06 1 200880585 200880585 G A C1orf106 Missense_Mutation p.D322N 0.15 tolerated(0.12) benign(0.411) TCGA-ER-A193-06 1 200973910 200973910 G A KIF21B Missense_Mutation p.S295F 0.42 deleterious(0) possibly_damaging(0.765) TCGA-ER-A193-06 1 201036090 201036090 C T CACNA1S Missense_Mutation p.G861D 0.15 deleterious(0) probably_damaging(0.982) TCGA-ER-A193-06 1 201054112 201054112 C T CACNA1S Missense_Mutation p.E400K 0.18 tolerated(0.13) benign(0.003) TCGA-ER-A193-06 1 201197690 201197690 C T IGFN1 3'UTR 0.50 TCGA-ER-A193-06 1 201751934 201751934 C T NAV1 Missense_Mutation p.P765L 0.15 tolerated(0.07) benign(0.02) TCGA-ER-A193-06 1 202279388 202279388 G A LGR6 Silent p.K490K 0.18 TCGA-ER-A193-06 1 202722118 202722118 G A KDM5B Missense_Mutation p.P539L 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 203138156 203138156 G A MYBPH Missense_Mutation p.S432F 0.18 deleterious(0.01) possibly_damaging(0.81) TCGA-ER-A193-06 1 203317141 203317141 G A FMOD Silent p.F86F 0.42 TCGA-ER-A193-06 1 204588975 204588975 T G LRRN2 Missense_Mutation p.E49A 0.21 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 1 204923368 204923368 G A NFASC Missense_Mutation p.V90M 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 205033517 205033517 C T CNTN2 Silent p.I436I 0.13 TCGA-ER-A193-06 1 205238338 205238338 C T TMCC2 Silent p.F336F 0.20 TCGA-ER-A193-06 1 205500592 205500592 G A CDK18 3'UTR 0.22 TCGA-ER-A193-06 1 206224958 206224958 C T AVPR1B Missense_Mutation p.S173F 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 207195889 207195889 C T C1orf116 Missense_Mutation p.G407E 0.44 tolerated(0.34) benign(0.018) TCGA-ER-A193-06 1 207297618 207297618 C T C4BPA Missense_Mutation p.P205S 0.16 tolerated(0.17) benign(0.265) TCGA-ER-A193-06 1 207737282 207737282 G A CR1 Silent p.Q1220Q 0.51 TCGA-ER-A193-06 1 207850845 207850845 C T CR1L Missense_Mutation p.S70F 0.36 tolerated(0.47) benign(0.001) TCGA-ER-A193-06 1 208390556 208390556 G A PLXNA2 Missense_Mutation p.H238Y 0.17 tolerated(1) possibly_damaging(0.751) TCGA-ER-A193-06 1 21049398 21049398 G A SH2D5 Silent p.L307L 0.27 TCGA-ER-A193-06 1 213061908 213061908 C T FLVCR1 Missense_Mutation p.S462L 0.29 deleterious(0) probably_damaging(0.968) TCGA-ER-A193-06 1 214813728 214813728 C T CENPF Missense_Mutation p.H683Y 0.26 possibly_damaging(0.623) TCGA-ER-A193-06 1 216495296 216495296 C T USH2A Missense_Mutation p.D525N 0.41 benign(0.021) TCGA-ER-A193-06 1 217784405 217784405 C T GPATCH2 Missense_Mutation p.E282K 0.40 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 1 21936093 21936094 - G RAP1GAP Frame_Shift_Ins p.L413Pfs*12 0.22 TCGA-ER-A193-06 1 220091654 220091654 C T SLC30A10 Missense_Mutation p.E301K 0.19 deleterious(0) probably_damaging(0.928) TCGA-ER-A193-06 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.13 deleterious(0) probably_damaging(0.977) TCGA-ER-A193-06 1 222712077 222712077 C T HHIPL2 Missense_Mutation p.G497E 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 223178316 223178316 G A DISP1 Missense_Mutation p.E1193K 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 22333383 22333383 C T CELA3A Silent p.A125A 0.27 TCGA-ER-A193-06 1 226566910 226566910 C T PARP1 Missense_Mutation p.V560M 0.16 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 1 227920378 227920378 C T JMJD4 Splice_Site p.X370_splice 0.35 TCGA-ER-A193-06 1 228109363 228109363 G A WNT9A Silent p.N318N 0.35 TCGA-ER-A193-06 1 228451840 228451840 G A OBSCN Missense_Mutation p.E1721K 0.18 probably_damaging(0.962) TCGA-ER-A193-06 1 228482045 228482045 C T OBSCN Missense_Mutation p.A4204V 0.18 benign(0.002) TCGA-ER-A193-06 1 228487670 228487670 C T OBSCN Missense_Mutation p.A4521V 0.39 benign(0.078) TCGA-ER-A193-06 1 230338955 230338955 C T GALNT2 Missense_Mutation p.P98L 0.21 deleterious(0) possibly_damaging(0.601) TCGA-ER-A193-06 1 232943543 232943543 C T MAP10 Missense_Mutation p.T925I 0.30 tolerated(0.2) benign(0.006) TCGA-ER-A193-06 1 233482338 233482338 C T MLK4 Missense_Mutation p.S319F 0.18 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 1 233514909 233514909 G A MLK4 Silent p.T719T 0.44 TCGA-ER-A193-06 1 234455868 234455868 G A SLC35F3 Missense_Mutation p.G391E 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 234595032 234595032 G A TARBP1 Silent p.L526L 0.16 TCGA-ER-A193-06 1 237811866 237811866 G A RYR2 Missense_Mutation p.E2489K 0.23 probably_damaging(0.992) TCGA-ER-A193-06 1 237870339 237870339 C T RYR2 Missense_Mutation p.S3224F 0.24 possibly_damaging(0.886) TCGA-ER-A193-06 1 237947684 237947684 G A RYR2 Silent p.E4224E 0.31 TCGA-ER-A193-06 1 237947694 237947694 G A RYR2 Missense_Mutation p.E4228K 0.23 possibly_damaging(0.526) TCGA-ER-A193-06 1 240492391 240492391 G A FMN2 Missense_Mutation p.E1411K 0.31 probably_damaging(0.999) TCGA-ER-A193-06 1 242253296 242253296 C T PLD5 Missense_Mutation p.E491K 0.40 deleterious(0.03) possibly_damaging(0.493) TCGA-ER-A193-06 1 24432553 24432553 G A MYOM3 Silent p.V139V 0.33 TCGA-ER-A193-06 1 244724036 244724036 C T C1orf101 Missense_Mutation p.L366F 0.43 tolerated(0.77) benign(0.013) TCGA-ER-A193-06 1 245019892 245019892 C T HNRNPU Missense_Mutation p.M593I 0.48 deleterious(0.01) unknown(0) TCGA-ER-A193-06 1 245021405 245021405 G A HNRNPU Missense_Mutation p.P468S 0.23 tolerated(0.22) unknown(0) TCGA-ER-A193-06 1 246027153 246027153 C T SMYD3 Nonsense_Mutation p.W283* 0.12 TCGA-ER-A193-06 1 247588907 247588907 G A NLRP3 Intron 0.37 TCGA-ER-A193-06 1 247769766 247769766 G A OR2G3 Silent p.R293R 0.28 TCGA-ER-A193-06 1 247836033 247836033 G A OR13G1 Missense_Mutation p.S104F 0.25 tolerated(0.59) possibly_damaging(0.691) TCGA-ER-A193-06 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.28 deleterious(0.04) benign(0.335) TCGA-ER-A193-06 1 248058951 248058951 C T OR2W3 Silent p.P21P 0.12 TCGA-ER-A193-06 1 248224630 248224630 C T OR2L3 Missense_Mutation p.S216F 0.32 deleterious(0) possibly_damaging(0.529) TCGA-ER-A193-06 1 248343642 248343642 G T OR2M2 Missense_Mutation p.A119S 0.20 tolerated(0.36) benign(0.185) TCGA-ER-A193-06 1 248487007 248487007 G A OR2M7 Silent p.L288L 0.18 TCGA-ER-A193-06 1 248512753 248512753 T A OR14C36 Missense_Mutation p.F226Y 0.15 deleterious(0) probably_damaging(0.962) TCGA-ER-A193-06 1 248737121 248737121 C T OR2T34 Missense_Mutation p.R313K 0.31 tolerated(0.33) benign(0.027) TCGA-ER-A193-06 1 249211020 249211020 C T PGBD2 Silent p.V79V 0.47 TCGA-ER-A193-06 1 26361662 26361662 G A EXTL1 Missense_Mutation p.G619R 0.39 tolerated(0.25) benign(0.038) TCGA-ER-A193-06 1 26361663 26361663 G A EXTL1 Missense_Mutation p.G619E 0.38 tolerated(0.26) benign(0.015) TCGA-ER-A193-06 1 26644527 26644527 C T CD52 Missense_Mutation p.L7F 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.765) TCGA-ER-A193-06 1 27942117 27942117 C T FGR Nonsense_Mutation p.W282* 0.55 TCGA-ER-A193-06 1 29342210 29342210 C T EPB41 Missense_Mutation p.P279L 0.17 deleterious(0.01) possibly_damaging(0.836) TCGA-ER-A193-06 1 2938863 2938863 C T ACTRT2 Missense_Mutation p.P205S 0.19 tolerated(0.57) benign(0.113) TCGA-ER-A193-06 1 32264057 32264057 C T SPOCD1 Missense_Mutation p.D672N 0.36 deleterious(0.02) probably_damaging(0.914) TCGA-ER-A193-06 1 33138435 33138435 G A RBBP4 Nonsense_Mutation p.W382* 0.32 TCGA-ER-A193-06 1 33985490 33985490 C T CSMD2 Missense_Mutation p.S3409N 0.21 deleterious(0.02) possibly_damaging(0.552) TCGA-ER-A193-06 1 34038122 34038122 G A CSMD2 Silent p.V2584V 0.26 TCGA-ER-A193-06 1 34092084 34092084 A T CSMD2 Splice_Site p.X1726_splice 0.31 TCGA-ER-A193-06 1 35227176 35227176 G A GJB4 Silent p.L107L 0.43 TCGA-ER-A193-06 1 35474514 35474514 G A ZMYM6 Missense_Mutation p.L502F 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 1 36348995 36348995 C T AGO1 5'UTR 0.15 TCGA-ER-A193-06 1 36932440 36932440 G A CSF3R Missense_Mutation p.P704S 0.45 tolerated(0.23) benign(0) TCGA-ER-A193-06 1 37282712 37282712 G A GRIK3 Silent p.T680T 0.41 TCGA-ER-A193-06 1 38078505 38078505 G A RSPO1 Silent p.G238G 0.42 TCGA-ER-A193-06 1 38082190 38082190 G A RSPO1 Silent p.F84F 0.34 TCGA-ER-A193-06 1 38184027 38184027 G A EPHA10 3'UTR 0.26 TCGA-ER-A193-06 1 38184120 38184120 C T EPHA10 Missense_Mutation p.R984Q 0.39 tolerated(1) benign(0.046) TCGA-ER-A193-06 1 38281117 38281117 C T MTF1 Silent p.K651K 0.26 TCGA-ER-A193-06 1 39763377 39763377 C T MACF1 Missense_Mutation p.T819I 0.34 benign(0.039) TCGA-ER-A193-06 1 39910341 39910341 A T MACF1 Missense_Mutation p.Y4421F 0.31 benign(0.007) TCGA-ER-A193-06 1 40705671 40705671 C T RLF Missense_Mutation p.P1766L 0.38 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 1 41092339 41092339 G A RIMS3 Silent p.I259I 0.39 TCGA-ER-A193-06 1 41107542 41107542 C T RIMS3 Missense_Mutation p.R19Q 0.27 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-ER-A193-06 1 41250026 41250026 C T KCNQ4 Silent p.V87V 0.22 TCGA-ER-A193-06 1 41481725 41481725 C T SLFNL1 3'UTR 0.40 TCGA-ER-A193-06 1 44064369 44064369 C T PTPRF Intron 0.37 TCGA-ER-A193-06 1 44087701 44087701 C T PTPRF 3'UTR 0.32 TCGA-ER-A193-06 1 45474040 45474040 A G HECTD3 Intron 0.29 TCGA-ER-A193-06 1 47395896 47395896 G A CYP4A11 Missense_Mutation p.P484L 0.42 tolerated(0.11) benign(0.097) TCGA-ER-A193-06 1 47395934 47395934 C T CYP4A11 Silent p.T471T 0.32 TCGA-ER-A193-06 1 47514275 47514275 A C CYP4X1 Missense_Mutation p.N416H 0.29 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 1 47515777 47515777 C T CYP4X1 Silent p.F487F 0.27 TCGA-ER-A193-06 1 47610552 47610552 G A CYP4A22 Missense_Mutation p.E378K 0.29 deleterious(0) possibly_damaging(0.896) TCGA-ER-A193-06 1 48698123 48698123 C T SLC5A9 Missense_Mutation p.P353S 0.28 deleterious(0.01) probably_damaging(0.913) TCGA-ER-A193-06 1 49128876 49128876 G A AGBL4 Silent p.F224F 0.31 TCGA-ER-A193-06 1 49332876 49332876 C T AGBL4 Silent p.T207T 0.23 TCGA-ER-A193-06 1 51753901 51753901 C T TTC39A Silent p.Q558Q 0.26 TCGA-ER-A193-06 1 51831680 51831680 A T EPS15 Missense_Mutation p.V714D 0.35 deleterious(0.03) possibly_damaging(0.776) TCGA-ER-A193-06 1 52211292 52211292 G A OSBPL9 Missense_Mutation p.E158K 0.41 tolerated(0.07) benign(0.06) TCGA-ER-A193-06 1 52249660 52249660 C T OSBPL9 Silent p.F539F 0.23 TCGA-ER-A193-06 1 53679049 53679049 C T CPT2 Silent p.L587L 0.27 TCGA-ER-A193-06 1 53972352 53972352 G A GLIS1 Silent p.F601F 0.30 TCGA-ER-A193-06 1 54605439 54605439 C T CDCP2 Silent p.V368V 0.33 TCGA-ER-A193-06 1 55282696 55282696 G A C1orf177 Nonsense_Mutation p.W362* 0.27 TCGA-ER-A193-06 1 55317830 55317830 G A DHCR24 3'UTR 0.24 TCGA-ER-A193-06 1 55518042 55518042 C T PCSK9 Silent p.F205F 0.29 TCGA-ER-A193-06 1 57258448 57258448 C T C1orf168 Missense_Mutation p.R13Q 0.30 tolerated(0.1) benign(0.266) TCGA-ER-A193-06 1 57378188 57378188 G A C8A Missense_Mutation p.R498Q 0.30 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 1 57406640 57406640 A C C8B Missense_Mutation p.V427G 0.34 deleterious(0) probably_damaging(0.988) TCGA-ER-A193-06 1 57756820 57756820 C T DAB1 5'UTR 0.46 TCGA-ER-A193-06 1 59844482 59844482 C T FGGY Missense_Mutation p.S176L 0.21 deleterious(0) possibly_damaging(0.796) TCGA-ER-A193-06 1 60073487 60073487 C T FGGY Missense_Mutation p.P306S 0.24 deleterious(0.03) benign(0.12) TCGA-ER-A193-06 1 60359177 60359177 G A CYP2J2 3'UTR 0.32 TCGA-ER-A193-06 1 60466802 60466802 G A C1orf87 Missense_Mutation p.P407S 0.22 tolerated(0.75) benign(0.002) TCGA-ER-A193-06 1 60506689 60506689 C T C1orf87 Missense_Mutation p.V153M 0.21 tolerated(0.22) benign(0.005) TCGA-ER-A193-06 1 6204202 6204202 C T CHD5 Missense_Mutation p.G606R 0.30 deleterious(0.02) probably_damaging(0.979) TCGA-ER-A193-06 1 6253107 6253107 A G RPL22 Missense_Mutation p.F42S 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 1 62586894 62586894 C T INADL Silent p.F1644F 0.23 TCGA-ER-A193-06 1 62740257 62740257 C T KANK4 Silent p.R173R 0.29 TCGA-ER-A193-06 1 62740610 62740610 G A KANK4 Missense_Mutation p.P56S 0.29 tolerated(0.53) benign(0.365) TCGA-ER-A193-06 1 62910551 62910551 G A USP1 Missense_Mutation p.E234K 0.38 tolerated(0.29) benign(0.016) TCGA-ER-A193-06 1 63299789 63299789 T C ATG4C Splice_Site p.X338_splice 0.29 TCGA-ER-A193-06 1 63920114 63920114 G A ITGB3BP Missense_Mutation p.L161F 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 6528392 6528392 G A PLEKHG5 Missense_Mutation p.P914L 0.21 deleterious_low_confidence(0.05) probably_damaging(0.991) TCGA-ER-A193-06 1 65831742 65831742 C T DNAJC6 Missense_Mutation p.P136S 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 67147836 67147836 C T SGIP1 Missense_Mutation p.P367S 0.27 tolerated_low_confidence(0.16) benign(0.001) TCGA-ER-A193-06 1 68564346 68564346 A T WLS Missense_Mutation p.F534Y 0.27 deleterious_low_confidence(0) benign(0.294) TCGA-ER-A193-06 1 70715710 70715710 C T SRSF11 Silent p.S366S 0.21 TCGA-ER-A193-06 1 70881666 70881666 C T CTH Missense_Mutation p.P66S 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 75672311 75672311 G A SLC44A5 Missense_Mutation p.P714L 0.33 deleterious(0.04) benign(0.002) TCGA-ER-A193-06 1 75684323 75684323 A G SLC44A5 Silent p.L461L 0.30 TCGA-ER-A193-06 1 76349430 76349430 C T MSH4 Silent p.I677I 0.25 TCGA-ER-A193-06 1 7724061 7724061 C T CAMTA1 Missense_Mutation p.P485L 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 1 7725010 7725010 G A CAMTA1 Silent p.T801T 0.34 TCGA-ER-A193-06 1 78162886 78162886 G A USP33 3'UTR 0.30 TCGA-ER-A193-06 1 79403957 79403957 G A ELTD1 Missense_Mutation p.S135F 0.19 deleterious(0.02) benign(0.094) TCGA-ER-A193-06 1 82421744 82421744 G T LPHN2 Missense_Mutation p.V656F 0.44 tolerated(0.24) benign(0.255) TCGA-ER-A193-06 1 8390856 8390856 C T SLC45A1 Silent p.L435L 0.41 TCGA-ER-A193-06 1 84662426 84662426 G T PRKACB Splice_Site p.X229_splice 0.43 TCGA-ER-A193-06 1 89599001 89599001 C T GBP7 Missense_Mutation p.M534I 0.47 tolerated(0.1) benign(0.013) TCGA-ER-A193-06 1 90401047 90401047 G A LRRC8D Missense_Mutation p.G807E 0.47 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 1 94639580 94639580 T C ARHGAP29 Missense_Mutation p.K1211E 0.35 tolerated_low_confidence(0.93) benign(0.009) TCGA-ER-A193-06 1 9714387 9714387 C T C1orf200 Silent p.Q36Q 0.17 TCGA-ER-A193-06 1 980604 980626 GCTGCCAGGACAATATCACCGCA - AGRN Frame_Shift_Del p.C774Pfs*25 0.18 TCGA-ER-A193-06 20 10541448 10541448 C T SLX4IP Missense_Mutation p.S73F 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 20 1559045 1559045 C T RP4-576H24.4 Silent p.R123R 0.34 TCGA-ER-A193-06 20 1559046 1559046 C T RP4-576H24.4 Missense_Mutation p.R123Q 0.33 tolerated(1) benign(0.032) TCGA-ER-A193-06 20 16387034 16387034 G A KIF16B Silent p.L560L 0.25 TCGA-ER-A193-06 20 18295808 18295808 C T ZNF133 Missense_Mutation p.P104S 0.31 tolerated(0.36) possibly_damaging(0.56) TCGA-ER-A193-06 20 18295809 18295809 C T ZNF133 Missense_Mutation p.P104L 0.30 tolerated(0.18) benign(0.392) TCGA-ER-A193-06 20 19566145 19566145 A G SLC24A3 Missense_Mutation p.N190S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 20 20527462 20527462 C T RALGAPA2 Silent p.T1057T 0.14 TCGA-ER-A193-06 20 20569971 20569971 C T RALGAPA2 Missense_Mutation p.E794K 0.29 tolerated(0.6) benign(0.007) TCGA-ER-A193-06 20 21492948 21492948 C T NKX2-2 Silent p.R145R 0.33 TCGA-ER-A193-06 20 23476513 23476513 G A CST8 Missense_Mutation p.E131K 0.25 deleterious(0.05) benign(0.13) TCGA-ER-A193-06 20 2376014 2376014 C T TGM6 Missense_Mutation p.S119F 0.22 tolerated(0.05) possibly_damaging(0.673) TCGA-ER-A193-06 20 2380241 2380241 G A TGM6 Missense_Mutation p.G236E 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 20 25203395 25203395 C T ENTPD6 Intron 0.26 TCGA-ER-A193-06 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.14 deleterious(0) probably_damaging(0.991) TCGA-ER-A193-06 20 26084146 26084146 G A NCOR1P1 RNA 0.17 TCGA-ER-A193-06 20 29632695 29632695 A C FRG1B Silent p.G170G 0.03 TCGA-ER-A193-06 20 3147713 3147713 G A LZTS3 Missense_Mutation p.P33S 0.31 tolerated(0.21) probably_damaging(0.968) TCGA-ER-A193-06 20 31607401 31607401 C T BPIFB2 Missense_Mutation p.P309S 0.33 deleterious(0.03) probably_damaging(1) TCGA-ER-A193-06 20 31624250 31624250 G A BPIFB6 Splice_Site p.X193_splice 0.24 TCGA-ER-A193-06 20 32349678 32349678 G T ZNF341 Nonsense_Mutation p.E340* 0.29 TCGA-ER-A193-06 20 33324560 33324560 G A NCOA6 Missense_Mutation p.P1966S 0.22 benign(0.001) TCGA-ER-A193-06 20 34091040 34091040 G A CEP250 Missense_Mutation p.E1615K 0.49 probably_damaging(0.999) TCGA-ER-A193-06 20 36151112 36151112 G A NNAT Missense_Mutation p.R66Q 0.38 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-ER-A193-06 20 37168506 37168506 C T RALGAPB Missense_Mutation p.P823S 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 20 3719337 3719337 G A HSPA12B Missense_Mutation p.E6K 0.33 deleterious_low_confidence(0.04) benign(0.023) TCGA-ER-A193-06 20 37199425 37199425 C T RALGAPB Silent p.L1359L 0.28 TCGA-ER-A193-06 20 372142 372142 C T TRIB3 Missense_Mutation p.T168I 0.18 deleterious(0.01) benign(0.234) TCGA-ER-A193-06 20 3838380 3838380 C T MAVS Silent p.F72F 0.26 TCGA-ER-A193-06 20 39794189 39794189 G A PLCG1 Missense_Mutation p.E537K 0.51 tolerated(0.21) possibly_damaging(0.507) TCGA-ER-A193-06 20 40877451 40877451 G A PTPRT Nonsense_Mutation p.Q730* 0.18 TCGA-ER-A193-06 20 42198152 42198152 G A SGK2 Missense_Mutation p.G179E 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 20 43945631 43945631 G A RBPJL 3'UTR 0.46 TCGA-ER-A193-06 20 44167995 44167995 C T WFDC6 Missense_Mutation p.D18N 0.38 tolerated(1) benign(0.009) TCGA-ER-A193-06 20 44578901 44578912 GGTCTGGGTTGG - ZNF335 In_Frame_Del p.P1145_T1148del 0.14 TCGA-ER-A193-06 20 45194871 45194871 C T SLC13A3 Silent p.E497E 0.44 TCGA-ER-A193-06 20 45353966 45353966 C T SLC2A10 Silent p.S97S 0.59 TCGA-ER-A193-06 20 46281213 46281213 C T NCOA3 Missense_Mutation p.S1337L 0.51 deleterious(0.02) benign(0.212) TCGA-ER-A193-06 20 50286538 50286538 G A ATP9A Nonsense_Mutation p.Q431* 0.35 TCGA-ER-A193-06 20 50701142 50701142 G A ZFP64 Missense_Mutation p.S631F 0.42 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-ER-A193-06 20 5282926 5282926 G A PROKR2 Silent p.F305F 0.35 TCGA-ER-A193-06 20 5294791 5294791 G A PROKR2 Silent p.I75I 0.29 TCGA-ER-A193-06 20 55100852 55100852 C T FAM209A Intron 0.24 TCGA-ER-A193-06 20 56138725 56138725 C G PCK1 Silent p.P301P 0.43 TCGA-ER-A193-06 20 56140833 56140833 C T PCK1 Silent p.A614A 0.21 TCGA-ER-A193-06 20 56191419 56191419 T C ZBP1 Missense_Mutation p.Q47R 0.41 tolerated(0.37) possibly_damaging(0.728) TCGA-ER-A193-06 20 56227540 56227540 C T PMEPA1 Missense_Mutation p.D145N 0.37 tolerated(0.12) probably_damaging(0.928) TCGA-ER-A193-06 20 57598904 57598904 G A TUBB1 Missense_Mutation p.G141E 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A193-06 20 57767358 57767358 G A ZNF831 Silent p.R428R 0.21 TCGA-ER-A193-06 20 58883623 58883623 G A MIR646 RNA 0.40 TCGA-ER-A193-06 20 60348170 60348170 G A CDH4 Missense_Mutation p.D170N 0.38 deleterious(0) probably_damaging(0.987) TCGA-ER-A193-06 20 60705335 60705335 C T LSM14B Missense_Mutation p.P219L 0.60 tolerated(0.08) possibly_damaging(0.835) TCGA-ER-A193-06 20 61048533 61048533 G A GATA5 Silent p.L209L 0.15 TCGA-ER-A193-06 20 61598539 61598539 G A SLC17A9 Intron 0.25 TCGA-ER-A193-06 20 61943346 61943346 C T COL20A1 Missense_Mutation p.P581L 0.17 tolerated(0.8) benign(0.004) TCGA-ER-A193-06 20 62373328 62373328 C T SLC2A4RG Silent p.S166S 0.31 TCGA-ER-A193-06 20 62658990 62658990 T G PRPF6 Missense_Mutation p.L747R 0.09 tolerated(0.18) benign(0.005) TCGA-ER-A193-06 20 896816 896816 A C ANGPT4 Silent p.L14L 0.37 TCGA-ER-A193-06 20 9404516 9404516 G A PLCB4 Missense_Mutation p.R802Q 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 20 9546683 9546683 C T PAK7 Missense_Mutation p.E447K 0.27 tolerated(0.2) probably_damaging(0.951) TCGA-ER-A193-06 21 10908892 10908892 G A TPTE Missense_Mutation p.L485F 0.09 deleterious(0.04) possibly_damaging(0.464) TCGA-ER-A193-06 21 10910328 10910328 C T TPTE Silent p.V476V 0.09 TCGA-ER-A193-06 21 10969106 10969106 C T TPTE Missense_Mutation p.G48R 0.15 tolerated(0.15) benign(0.096) TCGA-ER-A193-06 21 19698860 19698860 C T TMPRSS15 Missense_Mutation p.D604N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A193-06 21 32519304 32519304 C A TIAM1 Silent p.L1128L 0.24 TCGA-ER-A193-06 21 32567601 32567601 G A TIAM1 Silent p.I838I 0.28 TCGA-ER-A193-06 21 33684140 33684140 G A MRAP Missense_Mutation p.G118S 0.29 tolerated(0.09) benign(0.22) TCGA-ER-A193-06 21 34927501 34927501 T C SON Silent p.P1988P 0.39 TCGA-ER-A193-06 21 35122567 35122567 C T ITSN1 Missense_Mutation p.P156S 0.25 tolerated(0.07) unknown(0) TCGA-ER-A193-06 21 37785199 37785199 T G CHAF1B Missense_Mutation p.F360C 0.28 deleterious(0) probably_damaging(0.964) TCGA-ER-A193-06 21 38095401 38095401 G A SIM2 Silent p.R171R 0.30 TCGA-ER-A193-06 21 39774508 39774508 G A ERG Missense_Mutation p.S222F 0.28 deleterious(0.01) possibly_damaging(0.866) TCGA-ER-A193-06 21 40574327 40574327 A G BRWD1 Silent p.G1503G 0.26 TCGA-ER-A193-06 21 41414561 41414561 G A DSCAM Missense_Mutation p.S1808F 0.33 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 21 45217384 45217384 C T RRP1 Silent p.H168H 0.33 TCGA-ER-A193-06 21 45540342 45540342 C T PWP2 Silent p.S434S 0.32 TCGA-ER-A193-06 21 45741700 45741700 C T PFKL Missense_Mutation p.S427F 0.24 tolerated(0.61) possibly_damaging(0.821) TCGA-ER-A193-06 21 45795894 45795894 G A TRPM2 Missense_Mutation p.G317E 0.38 tolerated(0.13) benign(0.224) TCGA-ER-A193-06 21 45821766 45821766 G A TRPM2 Missense_Mutation p.E842K 0.38 deleterious(0) possibly_damaging(0.804) TCGA-ER-A193-06 21 45999659 45999659 C G KRTAP10-5 Missense_Mutation p.C266S 0.32 deleterious(0.02) possibly_damaging(0.842) TCGA-ER-A193-06 21 46000140 46000140 C T KRTAP10-5 Missense_Mutation p.D106N 0.28 tolerated(0.33) unknown(0) TCGA-ER-A193-06 21 46596307 46596307 C T ADARB1 Missense_Mutation p.P231S 0.33 tolerated(0.09) benign(0.006) TCGA-ER-A193-06 21 47819663 47819663 C T PCNT Nonsense_Mutation p.Q1582* 0.33 TCGA-ER-A193-06 22 17265203 17265203 T C XKR3 Missense_Mutation p.K229R 0.22 tolerated(0.63) possibly_damaging(0.874) TCGA-ER-A193-06 22 20102123 20102123 G C TRMT2A Missense_Mutation p.R403G 0.25 deleterious(0.04) benign(0.142) TCGA-ER-A193-06 22 20132822 20132822 C T ZDHHC8 Intron 0.41 TCGA-ER-A193-06 22 20458068 20458068 G A RIMBP3 Silent p.F1078F 0.13 TCGA-ER-A193-06 22 22316831 22316831 G A TOP3B Missense_Mutation p.L499F 0.34 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 22 22599436 22599436 C T VPREB1 Missense_Mutation p.T42I 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-ER-A193-06 22 22890323 22890323 C T PRAME 3'UTR 0.33 TCGA-ER-A193-06 22 22931039 22931039 G A IGLV2-33 Silent p.G78G 0.30 TCGA-ER-A193-06 22 24456554 24456554 A G CABIN1 Missense_Mutation p.T523A 0.27 tolerated(0.66) benign(0.002) TCGA-ER-A193-06 22 24560498 24560498 C T CABIN1 Missense_Mutation p.S1626F 0.45 deleterious(0) probably_damaging(0.949) TCGA-ER-A193-06 22 25115712 25115712 T C PIWIL3 Intron 0.26 TCGA-ER-A193-06 22 26164884 26164884 A G MYO18B Missense_Mutation p.K334R 0.22 tolerated_low_confidence(0.07) benign(0.015) TCGA-ER-A193-06 22 26219623 26219623 C T MYO18B Silent p.L891L 0.27 TCGA-ER-A193-06 22 26997875 26997875 G A CRYBB1 Silent p.D181D 0.35 TCGA-ER-A193-06 22 29622514 29622514 G A EMID1 Missense_Mutation p.E147K 0.20 deleterious(0.01) benign(0.187) TCGA-ER-A193-06 22 29709932 29709932 G A RASL10A Silent p.A88A 0.36 TCGA-ER-A193-06 22 30405059 30405059 T G MTMR3 Silent p.S354S 0.32 TCGA-ER-A193-06 22 30416768 30416768 G A MTMR3 Silent p.Q1040Q 0.27 TCGA-ER-A193-06 22 30660329 30660329 G A OSM Missense_Mutation p.A101V 0.33 tolerated(0.05) benign(0.112) TCGA-ER-A193-06 22 30887877 30887877 G A SEC14L4 Silent p.G285G 0.34 TCGA-ER-A193-06 22 32548060 32548060 C T C22orf42 Missense_Mutation p.D132N 0.28 tolerated_low_confidence(1) benign(0) TCGA-ER-A193-06 22 32628921 32628921 A C SLC5A4 Missense_Mutation p.V329G 0.16 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 22 32756276 32756276 C T RFPL3 Silent p.F137F 0.35 TCGA-ER-A193-06 22 32756362 32756362 C T RFPL3 Missense_Mutation p.S166F 0.32 deleterious(0.04) possibly_damaging(0.855) TCGA-ER-A193-06 22 33253286 33253286 A T TIMP3 Missense_Mutation p.E85D 0.26 tolerated(0.55) benign(0.007) TCGA-ER-A193-06 22 33780259 33780259 C T LARGE Silent p.R308R 0.24 TCGA-ER-A193-06 22 34046453 34046453 G A LARGE Missense_Mutation p.S103F 0.32 deleterious_low_confidence(0.04) benign(0.391) TCGA-ER-A193-06 22 36662071 36662071 G A APOL1 Missense_Mutation p.E413K 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-ER-A193-06 22 37581438 37581438 G A C1QTNF6 Silent p.L37L 0.16 TCGA-ER-A193-06 22 37770941 37770941 G A ELFN2 Missense_Mutation p.R212C 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 22 38086704 38086704 G A NOL12 Missense_Mutation p.G128R 0.30 tolerated(0.39) benign(0.079) TCGA-ER-A193-06 22 38130441 38130441 C T TRIOBP Silent p.T1366T 0.30 TCGA-ER-A193-06 22 38355370 38355370 C T POLR2F Silent p.V36V 0.35 TCGA-ER-A193-06 22 38503919 38503919 C T BAIAP2L2 Silent p.G72G 0.24 TCGA-ER-A193-06 22 39138308 39138308 G A SUN2 Nonsense_Mutation p.Q377* 0.26 TCGA-ER-A193-06 22 39918324 39918324 C T ATF4 Missense_Mutation p.P258L 0.31 deleterious(0) possibly_damaging(0.907) TCGA-ER-A193-06 22 39966826 39966826 G A CACNA1I Silent p.T23T 0.36 TCGA-ER-A193-06 22 40045784 40045784 G A CACNA1I Missense_Mutation p.D616N 0.23 tolerated(0.5) benign(0.092) TCGA-ER-A193-06 22 40080330 40080330 G A CACNA1I Missense_Mutation p.D1952N 0.33 tolerated(0.3) possibly_damaging(0.539) TCGA-ER-A193-06 22 40139855 40139855 A G ENTHD1 Silent p.L551L 0.23 TCGA-ER-A193-06 22 42606728 42606728 G A TCF20 Silent p.F1528F 0.35 TCGA-ER-A193-06 22 42611304 42611304 G A TCF20 Missense_Mutation p.S3F 0.31 probably_damaging(0.998) TCGA-ER-A193-06 22 42908928 42908928 G A RRP7A Silent p.F277F 0.38 TCGA-ER-A193-06 22 43972300 43972300 C T EFCAB6 Silent p.K1099K 0.24 TCGA-ER-A193-06 22 43996122 43996122 C T EFCAB6 Silent p.G901G 0.31 TCGA-ER-A193-06 22 46644127 46644127 T C CDPF1 Missense_Mutation p.T19A 0.28 tolerated(1) benign(0) TCGA-ER-A193-06 22 50277967 50277967 C A ZBED4 Silent p.P219P 0.30 TCGA-ER-A193-06 2 100020940 100020940 T G REV1 Silent p.G1004G 0.24 TCGA-ER-A193-06 2 101010058 101010058 G A CHST10 Silent p.F240F 0.28 TCGA-ER-A193-06 2 102781425 102781425 C T IL1R1 Missense_Mutation p.P85S 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 2 102849490 102849490 G A IL1RL2 Silent p.V401V 0.31 TCGA-ER-A193-06 2 105654526 105654526 C T MRPS9 5'UTR 0.36 TCGA-ER-A193-06 2 106746178 106746178 G A UXS1 Missense_Mutation p.P177S 0.23 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 2 107029624 107029624 C T RGPD3 Missense_Mutation p.E1728K 0.28 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-ER-A193-06 2 107041433 107041433 G A RGPD3 Missense_Mutation p.S997L 0.28 deleterious(0.04) benign(0.002) TCGA-ER-A193-06 2 10712246 10712246 G A NOL10 Missense_Mutation p.S673L 0.28 deleterious(0.03) benign(0.318) TCGA-ER-A193-06 2 107460137 107460137 C T ST6GAL2 Nonsense_Mutation p.W99* 0.31 TCGA-ER-A193-06 2 108489038 108489038 T G RGPD4 Silent p.S1526S 0.05 TCGA-ER-A193-06 2 109964283 109964283 C T SH3RF3 Missense_Mutation p.L243F 0.18 tolerated(1) benign(0.028) TCGA-ER-A193-06 2 11052667 11052667 G A KCNF1 Missense_Mutation p.D39N 0.24 tolerated(0.14) possibly_damaging(0.876) TCGA-ER-A193-06 2 11053729 11053729 T G KCNF1 Missense_Mutation p.C393G 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 2 111419206 111419206 G A BUB1 Silent p.A390A 0.44 TCGA-ER-A193-06 2 112786543 112786543 G A MERTK 3'UTR 0.28 TCGA-ER-A193-06 2 113676317 113676317 G A IL37 Silent p.R196R 0.37 TCGA-ER-A193-06 2 113943683 113943683 G A PSD4 Silent p.L493L 0.19 TCGA-ER-A193-06 2 116101408 116101408 C T DPP10 Missense_Mutation p.S68L 0.24 tolerated(0.33) benign(0.001) TCGA-ER-A193-06 2 116447276 116447276 C T DPP10 Missense_Mutation p.S156L 0.33 deleterious(0) probably_damaging(0.993) TCGA-ER-A193-06 2 116447454 116447454 C T DPP10 Missense_Mutation p.S182F 0.30 deleterious(0) probably_damaging(0.946) TCGA-ER-A193-06 2 11706631 11706631 G A GREB1 Silent p.L101L 0.31 TCGA-ER-A193-06 2 11964794 11964794 C T LPIN1 Silent p.F935F 0.49 TCGA-ER-A193-06 2 1204860 1204860 C T SNTG2 Silent p.S221S 0.38 TCGA-ER-A193-06 2 121745958 121745958 C T GLI2 Missense_Mutation p.S823F 0.38 deleterious(0) possibly_damaging(0.691) TCGA-ER-A193-06 2 121989422 121989422 G A TFCP2L1 Missense_Mutation p.H441Y 0.38 deleterious(0.02) benign(0.112) TCGA-ER-A193-06 2 125530564 125530564 C T CNTNAP5 Nonsense_Mutation p.R907* 0.31 TCGA-ER-A193-06 2 128331611 128331611 C T MYO7B Silent p.L237L 0.28 TCGA-ER-A193-06 2 128476849 128476849 G A WDR33 Missense_Mutation p.P917L 0.31 tolerated_low_confidence(0.36) probably_damaging(0.981) TCGA-ER-A193-06 2 131985849 131985849 C T POTEE Missense_Mutation p.S317L 0.25 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-ER-A193-06 2 133402928 133402928 G A GPR39 Missense_Mutation p.E371K 0.31 tolerated(0.34) benign(0.062) TCGA-ER-A193-06 2 133542082 133542082 G A NCKAP5 Missense_Mutation p.P768S 0.35 tolerated(0.3) benign(0) TCGA-ER-A193-06 2 133751808 133751808 C T NCKAP5 Missense_Mutation p.E116K 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 2 135470837 135470837 C T TMEM163 Silent p.R85R 0.38 TCGA-ER-A193-06 2 137990579 137990579 G A THSD7B Missense_Mutation p.D676N 0.31 tolerated(0.19) possibly_damaging(0.728) TCGA-ER-A193-06 2 141122354 141122354 T C LRP1B Splice_Site p.X3670_splice 0.28 TCGA-ER-A193-06 2 1460037 1460037 C T TPO Missense_Mutation p.P268S 0.35 deleterious(0.02) possibly_damaging(0.718) TCGA-ER-A193-06 2 152350316 152350316 C T NEB Silent p.V8215V 0.33 TCGA-ER-A193-06 2 152404006 152404006 C T NEB Missense_Mutation p.M6768I 0.22 benign(0.34) TCGA-ER-A193-06 2 152420119 152420119 C T NEB Splice_Site p.X6231_splice 0.05 TCGA-ER-A193-06 2 152492816 152492816 C T NEB Silent p.K3009K 0.20 TCGA-ER-A193-06 2 15319127 15319127 G A NBAS Silent p.I2275I 0.31 TCGA-ER-A193-06 2 153484972 153484972 C T FMNL2 Silent p.I775I 0.29 TCGA-ER-A193-06 2 15555702 15555702 G A NBAS Missense_Mutation p.P969S 0.27 tolerated(0.2) benign(0.186) TCGA-ER-A193-06 2 157186171 157186171 G A NR4A2 Silent p.F176F 0.24 TCGA-ER-A193-06 2 157425915 157425915 C T GPD2 Silent p.T447T 0.34 TCGA-ER-A193-06 2 159195377 159195377 C T CCDC148 Missense_Mutation p.E209K 0.24 tolerated(0.13) possibly_damaging(0.801) TCGA-ER-A193-06 2 160672034 160672034 G A LY75-CD302 Silent p.I1477I 0.47 TCGA-ER-A193-06 2 160708785 160708785 G A LY75-CD302 Missense_Mutation p.S937L 0.27 tolerated(0.37) probably_damaging(0.947) TCGA-ER-A193-06 2 160729002 160729002 C T LY75-CD302 Missense_Mutation p.E693K 0.31 deleterious(0.01) benign(0.081) TCGA-ER-A193-06 2 160843670 160843670 G A PLA2R1 Silent p.F678F 0.32 TCGA-ER-A193-06 2 16086111 16086111 T A MYCN Nonsense_Mutation p.Y429* 0.36 TCGA-ER-A193-06 2 162661000 162661000 G A SLC4A10 Missense_Mutation p.G58R 0.35 tolerated(0.71) possibly_damaging(0.787) TCGA-ER-A193-06 2 162875760 162875760 C T DPP4 Missense_Mutation p.G424E 0.21 tolerated(0.16) benign(0.028) TCGA-ER-A193-06 2 163029656 163029656 C A FAP Intron 0.30 TCGA-ER-A193-06 2 163134738 163134738 C T IFIH1 Nonsense_Mutation p.W581* 0.23 TCGA-ER-A193-06 2 163302698 163302698 A T KCNH7 Missense_Mutation p.F462I 0.35 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 2 165551668 165551668 G A COBLL1 Missense_Mutation p.S783L 0.32 tolerated(1) benign(0) TCGA-ER-A193-06 2 166172039 166172039 G A SCN2A Missense_Mutation p.G481E 0.29 tolerated(0.18) probably_damaging(1) TCGA-ER-A193-06 2 166243496 166243496 G A SCN2A Missense_Mutation p.D1598N 0.23 deleterious(0) probably_damaging(0.959) TCGA-ER-A193-06 2 166243507 166243507 G A SCN2A Silent p.V1601V 0.28 TCGA-ER-A193-06 2 166786230 166786230 C T TTC21B Missense_Mutation p.G372E 0.17 deleterious(0.03) benign(0.063) TCGA-ER-A193-06 2 166805994 166805994 G A TTC21B Nonsense_Mutation p.R58* 0.22 TCGA-ER-A193-06 2 16736355 16736355 C T FAM49A Missense_Mutation p.G297E 0.25 deleterious(0.01) probably_damaging(0.958) TCGA-ER-A193-06 2 168099418 168099418 C T XIRP2 Missense_Mutation p.H506Y 0.31 probably_damaging(0.999) TCGA-ER-A193-06 2 168102837 168102837 T C XIRP2 Silent p.T1645T 0.25 TCGA-ER-A193-06 2 170518802 170518802 C T CCDC173 Silent p.R269R 0.16 TCGA-ER-A193-06 2 170917924 170917924 C T UBR3 Missense_Mutation p.L1664F 0.31 deleterious(0) benign(0.334) TCGA-ER-A193-06 2 171705805 171705805 G A GAD1 Missense_Mutation p.G377R 0.16 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 2 176983951 176983951 T C HOXD10 Missense_Mutation p.F339L 0.49 deleterious(0) probably_damaging(0.931) TCGA-ER-A193-06 2 178095665 178095666 - T NFE2L2 Frame_Shift_Ins p.Q556Tfs*15 0.25 TCGA-ER-A193-06 2 17898095 17898095 A G SMC6 Missense_Mutation p.F420S 0.28 deleterious(0.01) benign(0.038) TCGA-ER-A193-06 2 179426315 179426315 C T TTN Missense_Mutation p.G28182R 0.18 TCGA-ER-A193-06 2 179433173 179433173 C T TTN Missense_Mutation p.G25896R 0.20 TCGA-ER-A193-06 2 179440268 179440268 C T TTN Missense_Mutation p.E23531K 0.33 TCGA-ER-A193-06 2 179466205 179466205 C T TTN Missense_Mutation p.G18507R 0.30 TCGA-ER-A193-06 2 179466620 179466620 C T TTN Missense_Mutation p.E18431K 0.46 TCGA-ER-A193-06 2 179473616 179473616 G A TTN Silent p.I17374I 0.26 TCGA-ER-A193-06 2 179495906 179495906 C T TTN Silent p.K14623K 0.33 TCGA-ER-A193-06 2 179498051 179498051 G A TTN Nonsense_Mutation p.R14317* 0.26 TCGA-ER-A193-06 2 179542396 179542396 C A TTN Nonsense_Mutation p.E11415* 0.32 TCGA-ER-A193-06 2 179584810 179584810 G A TTN Silent p.L7853L 0.26 TCGA-ER-A193-06 2 179585824 179585824 G A TTN Missense_Mutation p.S7641L 0.27 TCGA-ER-A193-06 2 179589042 179589042 G A TTN Silent p.F7020F 0.38 TCGA-ER-A193-06 2 179592435 179592435 A G TTN Silent p.L6624L 0.26 TCGA-ER-A193-06 2 179595373 179595373 C T TTN Missense_Mutation p.E5963K 0.35 TCGA-ER-A193-06 2 179604270 179604270 C T TTN Missense_Mutation p.E4564K 0.34 TCGA-ER-A193-06 2 179605026 179605026 C T TTN Missense_Mutation p.E4312K 0.33 TCGA-ER-A193-06 2 179606491 179606491 G A TTN Silent p.I3823I 0.24 TCGA-ER-A193-06 2 179611580 179611580 G A TTN Intron 0.29 TCGA-ER-A193-06 2 179643629 179643629 G A TTN Missense_Mutation p.P1394S 0.26 TCGA-ER-A193-06 2 179647757 179647757 G A TTN Missense_Mutation p.S959F 0.26 TCGA-ER-A193-06 2 179664322 179664322 G A TTN Missense_Mutation p.P269L 0.28 TCGA-ER-A193-06 2 180810045 180810045 G A CWC22 Silent p.F846F 0.32 TCGA-ER-A193-06 2 182396465 182396465 C T ITGA4 Missense_Mutation p.H916Y 0.30 tolerated(0.41) benign(0.003) TCGA-ER-A193-06 2 183129116 183129116 C T PDE1A Missense_Mutation p.E43K 0.31 deleterious(0) possibly_damaging(0.69) TCGA-ER-A193-06 2 183387070 183387070 C T PDE1A Missense_Mutation p.E12K 0.30 tolerated_low_confidence(0.12) benign(0.145) TCGA-ER-A193-06 2 185801846 185801846 G A ZNF804A Missense_Mutation p.E575K 0.27 tolerated(0.12) benign(0.05) TCGA-ER-A193-06 2 187626618 187626618 G A FAM171B Missense_Mutation p.G517S 0.28 tolerated(0.73) benign(0.174) TCGA-ER-A193-06 2 18765522 18765522 C T NT5C1B Splice_Site p.X302_splice 0.28 TCGA-ER-A193-06 2 18765932 18765932 C T NT5C1B Missense_Mutation p.G251R 0.21 tolerated_low_confidence(0.62) benign(0.058) TCGA-ER-A193-06 2 18765933 18765933 C T NT5C1B Silent p.R250R 0.20 TCGA-ER-A193-06 2 188216651 188216651 C T CALCRL Missense_Mutation p.G389E 0.11 deleterious(0.01) probably_damaging(0.927) TCGA-ER-A193-06 2 189854874 189854874 C T COL3A1 Missense_Mutation p.P248L 0.25 unknown(0) TCGA-ER-A193-06 2 189867065 189867065 C T COL3A1 Silent p.F811F 0.31 TCGA-ER-A193-06 2 189901516 189901516 A G COL5A2 Silent p.I1313I 0.38 TCGA-ER-A193-06 2 192701240 192701240 C T SDPR Silent p.E229E 0.37 TCGA-ER-A193-06 2 192711221 192711221 T G SDPR Missense_Mutation p.N144T 0.42 tolerated(0.47) benign(0.01) TCGA-ER-A193-06 2 196581390 196581390 C T SLC39A10 Nonsense_Mutation p.R576* 0.27 TCGA-ER-A193-06 2 196664178 196664178 C T DNAH7 Missense_Mutation p.E3399K 0.35 tolerated(0.51) benign(0.014) TCGA-ER-A193-06 2 196738347 196738347 C T DNAH7 Missense_Mutation p.D2120N 0.27 deleterious(0.04) benign(0.118) TCGA-ER-A193-06 2 196774764 196774764 C T DNAH7 Missense_Mutation p.G1364E 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 2 196891640 196891640 C T DNAH7 Missense_Mutation p.G171R 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-ER-A193-06 2 197530331 197530331 C T CCDC150 Missense_Mutation p.S229F 0.19 deleterious(0.02) benign(0.29) TCGA-ER-A193-06 2 197672301 197672301 G A C2orf66 Missense_Mutation p.L74F 0.31 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 2 198949057 198949057 C T PLCL1 Silent p.N272N 0.27 TCGA-ER-A193-06 2 200193547 200193547 A T SATB2 Missense_Mutation p.N420K 0.43 deleterious(0.02) possibly_damaging(0.475) TCGA-ER-A193-06 2 201438509 201438509 T G SGOL2 Missense_Mutation p.I1147R 0.27 tolerated(0.16) benign(0.048) TCGA-ER-A193-06 2 201462153 201462153 C T AOX1 Silent p.I78I 0.27 TCGA-ER-A193-06 2 203157613 203157613 T A NOP58 Silent p.L298L 0.23 TCGA-ER-A193-06 2 203807494 203807494 C T CARF Missense_Mutation p.S37F 0.31 deleterious_low_confidence(0.02) probably_damaging(0.957) TCGA-ER-A193-06 2 20403772 20403772 G A SDC1 Silent p.T143T 0.26 TCGA-ER-A193-06 2 20403773 20403773 G A SDC1 Missense_Mutation p.T143I 0.26 deleterious(0) probably_damaging(0.954) TCGA-ER-A193-06 2 206265765 206265765 G A PARD3B Missense_Mutation p.G825R 0.28 tolerated(0.28) benign(0.394) TCGA-ER-A193-06 2 206562290 206562290 G A NRP2 Silent p.L32L 0.32 TCGA-ER-A193-06 2 207175171 207175171 A G ZDBF2 Silent p.S1973S 0.33 TCGA-ER-A193-06 2 208986442 208986442 C T CRYGD Silent p.T160T 0.22 TCGA-ER-A193-06 2 210560546 210560546 G A MAP2 Missense_Mutation p.A1218T 0.26 tolerated_low_confidence(1) benign(0.004) TCGA-ER-A193-06 2 21225258 21225258 T C APOB Missense_Mutation p.K4346E 0.32 benign(0) TCGA-ER-A193-06 2 21234846 21234846 C T APOB Missense_Mutation p.G1632S 0.35 possibly_damaging(0.759) TCGA-ER-A193-06 2 212495276 212495276 G A ERBB4 Silent p.L664L 0.36 TCGA-ER-A193-06 2 213872064 213872064 C T IKZF2 3'UTR 0.26 TCGA-ER-A193-06 2 215914410 215914410 G A ABCA12 Silent p.C211C 0.42 TCGA-ER-A193-06 2 218925401 218925401 C G CXCR2P1 RNA 0.24 TCGA-ER-A193-06 2 219029138 219029138 G A CXCR1 Missense_Mutation p.T266I 0.28 deleterious(0.02) possibly_damaging(0.615) TCGA-ER-A193-06 2 219341665 219341665 G A USP37 Silent p.C647C 0.28 TCGA-ER-A193-06 2 219536696 219536696 C T RNF25 5'UTR 0.24 TCGA-ER-A193-06 2 219871215 219871215 G T CCDC108 Missense_Mutation p.T1564K 0.34 tolerated(0.58) benign(0.025) TCGA-ER-A193-06 2 220108284 220108284 C T GLB1L Silent p.K4K 0.23 TCGA-ER-A193-06 2 220115710 220115710 G A TUBA4A Silent p.S237S 0.32 TCGA-ER-A193-06 2 220115711 220115711 G A TUBA4A Missense_Mutation p.S237F 0.30 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-ER-A193-06 2 220239733 220239733 G A DNPEP Silent p.V417V 0.30 TCGA-ER-A193-06 2 220354205 220354205 C T SPEG Missense_Mutation p.S2822L 0.13 benign(0.069) TCGA-ER-A193-06 2 220430136 220430136 G A OBSL1 Silent p.F745F 0.36 TCGA-ER-A193-06 2 222290657 222290657 G A EPHA4 3'UTR 0.40 TCGA-ER-A193-06 2 222321436 222321436 G A EPHA4 Silent p.I500I 0.28 TCGA-ER-A193-06 2 224642566 224642566 G A AP1S3 Silent p.F8F 0.19 TCGA-ER-A193-06 2 226446871 226446871 C T NYAP2 Silent p.I246I 0.20 TCGA-ER-A193-06 2 227875162 227875162 G A COL4A4 Silent p.L1463L 0.38 TCGA-ER-A193-06 2 227896882 227896882 C T COL4A4 Missense_Mutation p.G1230S 0.33 unknown(0) TCGA-ER-A193-06 2 227915856 227915856 C T COL4A4 Missense_Mutation p.G996E 0.38 unknown(0) TCGA-ER-A193-06 2 227915857 227915857 C T COL4A4 Missense_Mutation p.G996R 0.38 unknown(0) TCGA-ER-A193-06 2 227922198 227922198 C T COL4A4 Silent p.G834G 0.30 TCGA-ER-A193-06 2 228882983 228882983 G A SPHKAP Missense_Mutation p.P863S 0.40 tolerated(0.52) benign(0.013) TCGA-ER-A193-06 2 228883177 228883177 C T SPHKAP Missense_Mutation p.G798D 0.25 tolerated(0.3) benign(0.005) TCGA-ER-A193-06 2 228883927 228883927 G A SPHKAP Missense_Mutation p.S548F 0.24 deleterious(0) possibly_damaging(0.781) TCGA-ER-A193-06 2 231067394 231067394 G A SP110 Nonsense_Mutation p.Q317* 0.29 TCGA-ER-A193-06 2 231101941 231101941 G A SP140 Missense_Mutation p.R68Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 2 232392867 232392867 C T NMUR1 Missense_Mutation p.D289N 0.18 tolerated(0.37) benign(0.016) TCGA-ER-A193-06 2 233677177 233677177 C T GIGYF2 Nonsense_Mutation p.Q716* 0.27 TCGA-ER-A193-06 2 234969093 234969093 C T SPP2 Silent p.S138S 0.47 TCGA-ER-A193-06 2 238283530 238283530 G A COL6A3 Silent p.A1068A 0.26 TCGA-ER-A193-06 2 238283548 238283548 C T COL6A3 Silent p.Q1062Q 0.31 TCGA-ER-A193-06 2 238303473 238303473 C T COL6A3 Missense_Mutation p.D156N 0.32 possibly_damaging(0.479) TCGA-ER-A193-06 2 238722236 238722236 T A RBM44 Intron 0.53 TCGA-ER-A193-06 2 241826495 241826495 C T C2orf54 Missense_Mutation p.E446K 0.27 tolerated(0.09) benign(0.002) TCGA-ER-A193-06 2 25966191 25966191 C T ASXL2 Silent p.E1005E 0.32 TCGA-ER-A193-06 2 26532118 26532118 G A GPR113 3'Flank 0.41 TCGA-ER-A193-06 2 27360240 27360240 C T C2orf53 Missense_Mutation p.E320K 0.35 tolerated(0.07) benign(0.066) TCGA-ER-A193-06 2 27360391 27360391 C T C2orf53 Silent p.R269R 0.39 TCGA-ER-A193-06 2 27372124 27372124 G C TCF23 Missense_Mutation p.R41S 0.30 deleterious(0) benign(0.241) TCGA-ER-A193-06 2 27375592 27375592 C T TCF23 Silent p.L168L 0.24 TCGA-ER-A193-06 2 27478103 27478103 C T SLC30A3 3'UTR 0.27 TCGA-ER-A193-06 2 27481762 27481762 T C SLC30A3 Missense_Mutation p.K46E 0.36 tolerated(1) benign(0.002) TCGA-ER-A193-06 2 27505700 27505700 C T TRIM54 Missense_Mutation p.S34F 0.30 deleterious(0) possibly_damaging(0.847) TCGA-ER-A193-06 2 27521505 27521505 C T TRIM54 Missense_Mutation p.S80L 0.21 deleterious(0.02) benign(0.096) TCGA-ER-A193-06 2 27603104 27603104 C T ZNF513 Missense_Mutation p.D23N 0.32 tolerated(0.08) possibly_damaging(0.539) TCGA-ER-A193-06 2 27719829 27719829 G A GCKR Missense_Mutation p.E20K 0.38 deleterious(0.01) possibly_damaging(0.544) TCGA-ER-A193-06 2 27858050 27858050 C T GPN1 Missense_Mutation p.S172L 0.30 deleterious(0.01) possibly_damaging(0.523) TCGA-ER-A193-06 2 283168 283168 T G FAM150B Missense_Mutation p.K132N 0.19 deleterious(0) probably_damaging(0.982) TCGA-ER-A193-06 2 28823676 28823676 G A PLB1 Silent p.E825E 0.29 TCGA-ER-A193-06 2 31489531 31489531 C A EHD3 Silent p.A523A 0.33 TCGA-ER-A193-06 2 31489532 31489532 C T EHD3 Missense_Mutation p.H524Y 0.31 deleterious(0.03) possibly_damaging(0.657) TCGA-ER-A193-06 2 31806033 31806033 T G SRD5A2 RNA 0.39 TCGA-ER-A193-06 2 32517334 32517334 G A YIPF4 Missense_Mutation p.V108M 0.22 deleterious(0.01) possibly_damaging(0.875) TCGA-ER-A193-06 2 33500068 33500068 C T LTBP1 Missense_Mutation p.S927F 0.29 deleterious(0.01) possibly_damaging(0.599) TCGA-ER-A193-06 2 37230775 37230775 G A HEATR5B Missense_Mutation p.P1654S 0.27 tolerated(1) benign(0.001) TCGA-ER-A193-06 2 37235782 37235782 G A HEATR5B Silent p.A1498A 0.24 TCGA-ER-A193-06 2 37265141 37265141 G A HEATR5B Missense_Mutation p.R1025C 0.58 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 2 43871886 43871886 T C PLEKHH2 Missense_Mutation p.M25T 0.30 deleterious(0.01) benign(0.064) TCGA-ER-A193-06 2 44200775 44200775 A G LRPPRC Missense_Mutation p.V447A 0.31 tolerated(0.63) benign(0.008) TCGA-ER-A193-06 2 48925938 48925938 C T LHCGR Missense_Mutation p.D228N 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 2 56611444 56611444 G A CCDC85A Missense_Mutation p.G539E 0.25 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-ER-A193-06 2 61304125 61304125 C T KIAA1841 Missense_Mutation p.L168F 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 2 61308628 61308628 T C KIAA1841 Silent p.L238L 0.30 TCGA-ER-A193-06 2 63175992 63175992 A C EHBP1 Missense_Mutation p.K706Q 0.22 tolerated_low_confidence(0.09) benign(0.24) TCGA-ER-A193-06 2 65296886 65296886 C T CEP68 Missense_Mutation p.P103L 0.35 tolerated(0.19) benign(0.323) TCGA-ER-A193-06 2 69093461 69093461 C T BMP10 Missense_Mutation p.G193R 0.19 tolerated(0.14) possibly_damaging(0.734) TCGA-ER-A193-06 2 69759266 69759266 C T AAK1 Missense_Mutation p.G188D 0.30 deleterious(0.01) unknown(0) TCGA-ER-A193-06 2 70187831 70187831 C T ASPRV1 Silent p.E330E 0.30 TCGA-ER-A193-06 2 70931583 70931583 C T ADD2 Silent p.R64R 0.38 TCGA-ER-A193-06 2 71781022 71781022 C T DYSF Silent p.I690I 0.30 TCGA-ER-A193-06 2 71827912 71827912 G A DYSF Silent p.T1279T 0.29 TCGA-ER-A193-06 2 72361998 72361998 G A CYP26B1 Silent p.I251I 0.29 TCGA-ER-A193-06 2 73302669 73302669 G A RAB11FIP5 Missense_Mutation p.P648S 0.24 tolerated_low_confidence(0.06) benign(0.026) TCGA-ER-A193-06 2 73679862 73679862 G A ALMS1 Missense_Mutation p.G2069S 0.20 benign(0.149) TCGA-ER-A193-06 2 74043122 74043122 G A C2orf78 Missense_Mutation p.G591E 0.29 tolerated(0.16) probably_damaging(0.996) TCGA-ER-A193-06 2 74274486 74274486 C T TET3 Missense_Mutation p.P346L 0.29 deleterious(0) probably_damaging(0.93) TCGA-ER-A193-06 2 74328497 74328497 C T TET3 Missense_Mutation p.P1393S 0.28 tolerated(0.53) benign(0.006) TCGA-ER-A193-06 2 74475491 74475491 G A SLC4A5 Silent p.F592F 0.37 TCGA-ER-A193-06 2 74684951 74684951 G A INO80B Missense_Mutation p.G344E 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A193-06 2 79255393 79255393 C T REG3G Silent p.F173F 0.25 TCGA-ER-A193-06 2 86327194 86327194 G A POLR1A Missense_Mutation p.S60F 0.27 deleterious(0.03) possibly_damaging(0.477) TCGA-ER-A193-06 2 86481850 86481850 C T REEP1 Silent p.K97K 0.40 TCGA-ER-A193-06 2 88405935 88405935 C T SMYD1 Missense_Mutation p.S358L 0.31 tolerated(0.21) benign(0.051) TCGA-ER-A193-06 2 88425840 88425840 C T FABP1 Missense_Mutation p.G32E 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A193-06 2 88472870 88472870 C T THNSL2 Silent p.L67L 0.16 TCGA-ER-A193-06 2 89999525 89999525 G A IGKV2D-28 Silent p.G109G 0.20 TCGA-ER-A193-06 2 98422129 98422129 G A TMEM131 Missense_Mutation p.S698F 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 2 98853161 98853161 G A VWA3B Missense_Mutation p.D881N 0.27 tolerated(0.15) benign(0.076) TCGA-ER-A193-06 2 99156085 99156085 C T INPP4A Silent p.S255S 0.33 TCGA-ER-A193-06 3 100016779 100016779 C T TBC1D23 Missense_Mutation p.L297F 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-ER-A193-06 3 10012301 10012301 C T EMC3 Missense_Mutation p.R180Q 0.24 deleterious(0.03) possibly_damaging(0.737) TCGA-ER-A193-06 3 101484420 101484420 C T CEP97 3'UTR 0.44 TCGA-ER-A193-06 3 101574613 101574613 A G NFKBIZ Missense_Mutation p.N564S 0.41 tolerated(0.06) possibly_damaging(0.877) TCGA-ER-A193-06 3 10311938 10311938 C T TATDN2 Missense_Mutation p.P358S 0.31 tolerated(0.91) benign(0.004) TCGA-ER-A193-06 3 10357052 10357052 G A SEC13 Silent p.I39I 0.17 TCGA-ER-A193-06 3 108076803 108076803 G A HHLA2 Silent p.G266G 0.36 TCGA-ER-A193-06 3 108475427 108475427 G A RETNLB Missense_Mutation p.P46S 0.33 tolerated(0.33) benign(0.039) TCGA-ER-A193-06 3 108568052 108568052 G A TRAT1 Missense_Mutation p.R85Q 0.26 tolerated(0.62) benign(0.283) TCGA-ER-A193-06 3 108836919 108836919 G A MORC1 5'UTR 0.47 TCGA-ER-A193-06 3 111632494 111632494 C T PHLDB2 Missense_Mutation p.S555F 0.29 deleterious(0.02) benign(0.139) TCGA-ER-A193-06 3 112648221 112648221 C T CD200R1 Silent p.K112K 0.37 TCGA-ER-A193-06 3 112648329 112648329 C T CD200R1 Missense_Mutation p.M76I 0.34 tolerated(0.21) possibly_damaging(0.546) TCGA-ER-A193-06 3 112666766 112666766 C T CD200R1 Missense_Mutation p.E25K 0.28 tolerated(0.36) benign(0.139) TCGA-ER-A193-06 3 11301359 11301359 G A HRH1 Silent p.K212K 0.34 TCGA-ER-A193-06 3 113084890 113084890 G A WDR52 Missense_Mutation p.P904L 0.28 deleterious(0) possibly_damaging(0.525) TCGA-ER-A193-06 3 113795694 113795694 C T QTRTD1 Silent p.F229F 0.35 TCGA-ER-A193-06 3 114069795 114069795 G A ZBTB20 Missense_Mutation p.S377L 0.24 tolerated(0.09) possibly_damaging(0.885) TCGA-ER-A193-06 3 118867108 118867108 G A C3orf30 Missense_Mutation p.E494K 0.33 deleterious(0) possibly_damaging(0.801) TCGA-ER-A193-06 3 120128466 120128466 G A FSTL1 Silent p.I125I 0.31 TCGA-ER-A193-06 3 120352144 120352144 G A HGD Silent p.I346I 0.25 TCGA-ER-A193-06 3 120393830 120393830 G A HGD Missense_Mutation p.P32S 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 120495385 120495385 A T GTF2E1 Missense_Mutation p.I256F 0.32 deleterious(0) possibly_damaging(0.827) TCGA-ER-A193-06 3 121340651 121340651 G A FBXO40 Silent p.L125L 0.36 TCGA-ER-A193-06 3 121340805 121340805 G A FBXO40 Missense_Mutation p.D177N 0.23 tolerated(0.47) benign(0.001) TCGA-ER-A193-06 3 122290533 122290533 A C DTX3L Missense_Mutation p.Y721S 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 3 122399887 122399887 C T PARP14 Missense_Mutation p.R53C 0.37 deleterious(0.04) benign(0.051) TCGA-ER-A193-06 3 122459599 122459599 T C HSPBAP1 Missense_Mutation p.M354V 0.33 tolerated(0.56) benign(0) TCGA-ER-A193-06 3 122630379 122630379 A T SEMA5B Missense_Mutation p.I1071N 0.16 tolerated(0.1) possibly_damaging(0.807) TCGA-ER-A193-06 3 123022927 123022927 G A ADCY5 Missense_Mutation p.A849V 0.30 deleterious(0.05) benign(0.067) TCGA-ER-A193-06 3 123456251 123456251 G A MYLK Missense_Mutation p.S243L 0.28 deleterious(0) benign(0.164) TCGA-ER-A193-06 3 124053225 124053225 G A KALRN Silent p.L508L 0.41 TCGA-ER-A193-06 3 124281768 124281768 G A KALRN Missense_Mutation p.G43R 0.37 deleterious(0) probably_damaging(0.981) TCGA-ER-A193-06 3 124390556 124390556 G A KALRN Silent p.V342V 0.36 TCGA-ER-A193-06 3 127965788 127965788 C T EEFSEC Silent p.V142V 0.31 TCGA-ER-A193-06 3 12881705 12881705 T C RPL32 Missense_Mutation p.K11R 0.31 tolerated(0.08) benign(0.026) TCGA-ER-A193-06 3 129281741 129281741 C G PLXND1 Missense_Mutation p.V1572L 0.23 deleterious(0.01) possibly_damaging(0.78) TCGA-ER-A193-06 3 12954973 12954973 G A IQSEC1 Silent p.L771L 0.26 TCGA-ER-A193-06 3 130282241 130282241 C T COL6A6 Missense_Mutation p.P132S 0.28 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 3 130452892 130452892 G A PIK3R4 Missense_Mutation p.P317L 0.33 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 3 132277877 132277877 G A ACAD11 Missense_Mutation p.L761F 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-ER-A193-06 3 133495981 133495981 C G TF Missense_Mutation p.T654R 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 134329038 134329038 G A KY Missense_Mutation p.L300F 0.33 deleterious(0.04) benign(0.246) TCGA-ER-A193-06 3 136573917 136573917 C T SLC35G2 Silent p.F205F 0.27 TCGA-ER-A193-06 3 136677029 136677029 C T IL20RB Missense_Mutation p.P25L 0.22 tolerated(0.09) benign(0.091) TCGA-ER-A193-06 3 138224239 138224239 T A CEP70 Missense_Mutation p.K373N 0.30 deleterious(0.02) possibly_damaging(0.841) TCGA-ER-A193-06 3 138724664 138724664 G A PRR23A Silent p.I149I 0.41 TCGA-ER-A193-06 3 138738846 138738846 G A PRR23B Missense_Mutation p.R220C 0.27 deleterious(0) possibly_damaging(0.761) TCGA-ER-A193-06 3 138739050 138739050 C T PRR23B Missense_Mutation p.E152K 0.28 tolerated(0.06) benign(0.193) TCGA-ER-A193-06 3 139297865 139297865 G A NMNAT3 Missense_Mutation p.P11S 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 3 1414149 1414149 G A CNTN6 Silent p.R553R 0.26 TCGA-ER-A193-06 3 141497718 141497718 G A GRK7 Missense_Mutation p.G198R 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 3 142272230 142272230 C T ATR Missense_Mutation p.G882R 0.32 deleterious(0.01) benign(0.162) TCGA-ER-A193-06 3 142278242 142278242 G A ATR Missense_Mutation p.P528L 0.25 tolerated_low_confidence(0.13) benign(0) TCGA-ER-A193-06 3 1424693 1424693 C T CNTN6 Missense_Mutation p.S745L 0.35 deleterious(0.04) benign(0.007) TCGA-ER-A193-06 3 14565160 14565160 G A GRIP2 RNA 0.30 TCGA-ER-A193-06 3 146323039 146323039 G A PLSCR5 5'UTR 0.35 TCGA-ER-A193-06 3 148459810 148459810 C T AGTR1 Missense_Mutation p.L330F 0.38 tolerated(0.18) probably_damaging(0.927) TCGA-ER-A193-06 3 148596449 148596449 G A CPA3 Missense_Mutation p.E130K 0.29 tolerated(0.3) benign(0.013) TCGA-ER-A193-06 3 148600313 148600313 C T CPA3 Missense_Mutation p.R237C 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 148884855 148884855 C T HPS3 Missense_Mutation p.S875F 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-ER-A193-06 3 148897413 148897413 C T CP Missense_Mutation p.R864K 0.38 deleterious(0.03) possibly_damaging(0.75) TCGA-ER-A193-06 3 150264610 150264610 C T EIF2A Silent p.L7L 0.32 TCGA-ER-A193-06 3 151176400 151176400 C G IGSF10 Missense_Mutation p.C33S 0.26 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 3 151531955 151531955 G A AADAC Missense_Mutation p.G2E 0.30 deleterious(0.04) benign(0.347) TCGA-ER-A193-06 3 152058585 152058585 G T TMEM14E Missense_Mutation p.Q37K 0.31 tolerated_low_confidence(0.06) benign(0.342) TCGA-ER-A193-06 3 155199879 155199879 G A PLCH1 Silent p.T1320T 0.28 TCGA-ER-A193-06 3 155199880 155199880 G A PLCH1 Missense_Mutation p.T1320I 0.28 tolerated_low_confidence(0.12) benign(0.066) TCGA-ER-A193-06 3 155200813 155200813 C T PLCH1 Missense_Mutation p.G1009E 0.25 tolerated_low_confidence(0.39) benign(0.005) TCGA-ER-A193-06 3 155222400 155222400 C T PLCH1 Missense_Mutation p.E538K 0.28 tolerated(0.07) benign(0.283) TCGA-ER-A193-06 3 166960362 166960362 A T ZBBX Missense_Mutation p.I775K 0.29 deleterious(0.03) benign(0.168) TCGA-ER-A193-06 3 166960382 166960382 G A ZBBX Silent p.F768F 0.31 TCGA-ER-A193-06 3 167196684 167196684 C T WDR49 Silent p.V692V 0.36 TCGA-ER-A193-06 3 167322214 167322214 G A WDR49 5'UTR 0.34 TCGA-ER-A193-06 3 168845645 168845645 G A MECOM Missense_Mutation p.P149S 0.32 deleterious(0.04) benign(0.074) TCGA-ER-A193-06 3 169664489 169664489 C T RP11-379K17.4 RNA 0.28 TCGA-ER-A193-06 3 169835174 169835174 G A PHC3 Missense_Mutation p.P678L 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 3 17052326 17052326 C T PLCL2 Silent p.F370F 0.32 TCGA-ER-A193-06 3 17053022 17053022 C T PLCL2 Silent p.L602L 0.30 TCGA-ER-A193-06 3 170895115 170895115 G A TNIK Missense_Mutation p.P232S 0.36 deleterious(0.02) unknown(0) TCGA-ER-A193-06 3 172835378 172835378 C T SPATA16 Silent p.K48K 0.32 TCGA-ER-A193-06 3 174815070 174815070 G A NAALADL2 Silent p.K178K 0.33 TCGA-ER-A193-06 3 180359902 180359902 G A CCDC39 Silent p.L585L 0.25 TCGA-ER-A193-06 3 182683508 182683508 G A DCUN1D1 Missense_Mutation p.R13C 0.29 deleterious(0.04) benign(0.105) TCGA-ER-A193-06 3 183480001 183480001 C T YEATS2 Silent p.S627S 0.35 TCGA-ER-A193-06 3 183773112 183773112 C T HTR3C Nonsense_Mutation p.Q83* 0.40 TCGA-ER-A193-06 3 183961673 183961673 G A ALG3 Missense_Mutation p.P280S 0.10 tolerated(0.18) probably_damaging(0.919) TCGA-ER-A193-06 3 184001643 184001643 G A ECE2 Missense_Mutation p.R414K 0.43 tolerated(0.14) benign(0.045) TCGA-ER-A193-06 3 184008046 184008046 G A ECE2 Missense_Mutation p.E637K 0.41 tolerated(0.24) benign(0.212) TCGA-ER-A193-06 3 184107211 184107211 G A CHRD 3'UTR 0.19 TCGA-ER-A193-06 3 184689489 184689489 C T VPS8 Silent p.T1123T 0.35 TCGA-ER-A193-06 3 185882732 185882732 T G DGKG Missense_Mutation p.K724T 0.37 deleterious(0.01) probably_damaging(0.923) TCGA-ER-A193-06 3 186515359 186515359 T A RFC4 Silent p.T85T 0.30 TCGA-ER-A193-06 3 186954275 186954275 G A MASP1 Missense_Mutation p.P462S 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 189582116 189582116 C T TP63 Silent p.I225I 0.29 TCGA-ER-A193-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.28 deleterious(0.05) benign(0.012) TCGA-ER-A193-06 3 190994611 190994611 C T UTS2B Silent p.L75L 0.42 TCGA-ER-A193-06 3 193176837 193176837 G A ATP13A4 Intron 0.23 TCGA-ER-A193-06 3 194063251 194063251 A G CPN2 Missense_Mutation p.F61L 0.25 tolerated(1) benign(0.004) TCGA-ER-A193-06 3 195517627 195517627 C T MUC4 Missense_Mutation p.G275E 0.39 unknown(0) TCGA-ER-A193-06 3 196434309 196434309 G A CEP19 3'UTR 0.17 TCGA-ER-A193-06 3 196449386 196449386 C - PIGX Frame_Shift_Del p.P93Rfs*12 0.24 TCGA-ER-A193-06 3 197723072 197723072 T C LMLN Silent p.C358C 0.27 TCGA-ER-A193-06 3 20168972 20168972 C T KAT2B Silent p.F560F 0.30 TCGA-ER-A193-06 3 25670418 25670418 G A TOP2B Missense_Mutation p.S604F 0.25 deleterious(0) possibly_damaging(0.823) TCGA-ER-A193-06 3 2613165 2613165 C T CNTN4 5'UTR 0.28 TCGA-ER-A193-06 3 26751075 26751075 G A LRRC3B 5'UTR 0.38 TCGA-ER-A193-06 3 28555609 28555609 A G ZCWPW2 Missense_Mutation p.K238E 0.42 tolerated(0.06) benign(0.011) TCGA-ER-A193-06 3 2928802 2928802 A G CNTN4 Silent p.G278G 0.38 TCGA-ER-A193-06 3 3133936 3133936 C T IL5RA Nonsense_Mutation p.W322* 0.35 TCGA-ER-A193-06 3 32995348 32995348 C T CCR4 Missense_Mutation p.S145F 0.35 deleterious(0) probably_damaging(0.928) TCGA-ER-A193-06 3 35750524 35750524 G A ARPP21 Intron 0.37 TCGA-ER-A193-06 3 36874141 36874141 G A TRANK1 Silent p.I2267I 0.30 TCGA-ER-A193-06 3 36879994 36879994 C T TRANK1 Missense_Mutation p.E1752K 0.22 tolerated(0.15) benign(0.023) TCGA-ER-A193-06 3 38103711 38103711 C T DLEC1 Missense_Mutation p.S242F 0.29 tolerated(0.73) benign(0.019) TCGA-ER-A193-06 3 38414185 38414185 C T XYLB Missense_Mutation p.P269S 0.35 tolerated(1) benign(0.006) TCGA-ER-A193-06 3 38519999 38519999 T A ACVR2B Missense_Mutation p.F219Y 0.31 deleterious(0) probably_damaging(0.992) TCGA-ER-A193-06 3 38622442 38622442 C T SCN5A Missense_Mutation p.E1070K 0.19 tolerated(0.06) benign(0.236) TCGA-ER-A193-06 3 38648291 38648291 C T SCN5A Missense_Mutation p.E337K 0.24 tolerated(0.08) benign(0.034) TCGA-ER-A193-06 3 38671874 38671874 G A SCN5A Missense_Mutation p.A107V 0.25 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 3 38763812 38763812 G A SCN10A Silent p.I1148I 0.28 TCGA-ER-A193-06 3 38770081 38770081 G A SCN10A Silent p.S864S 0.18 TCGA-ER-A193-06 3 38770144 38770144 G A SCN10A Silent p.F843F 0.22 TCGA-ER-A193-06 3 38835385 38835385 C T SCN10A Silent p.E39E 0.29 TCGA-ER-A193-06 3 38888526 38888526 G A SCN11A Missense_Mutation p.R1679C 0.27 deleterious(0) probably_damaging(0.923) TCGA-ER-A193-06 3 39230591 39230591 C T XIRP1 Missense_Mutation p.E116K 0.32 deleterious(0.03) benign(0.216) TCGA-ER-A193-06 3 39307587 39307587 C T CX3CR1 Missense_Mutation p.M170I 0.30 deleterious(0.05) benign(0.013) TCGA-ER-A193-06 3 40457387 40457387 G A ENTPD3 Silent p.L218L 0.22 TCGA-ER-A193-06 3 40457388 40457388 G T ENTPD3 Missense_Mutation p.D219Y 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 40523356 40523356 C T ZNF619 Silent p.G9G 0.35 TCGA-ER-A193-06 3 40571772 40571772 C T ZNF621 Missense_Mutation p.P75L 0.19 deleterious(0.04) possibly_damaging(0.738) TCGA-ER-A193-06 3 42915776 42915776 C T CYP8B1 3'UTR 0.26 TCGA-ER-A193-06 3 42915777 42915777 C T CYP8B1 3'UTR 0.25 TCGA-ER-A193-06 3 45127251 45127251 G A CDCP1 Missense_Mutation p.S797F 0.35 tolerated(0.78) benign(0.001) TCGA-ER-A193-06 3 46008470 46008470 G A FYCO1 Nonsense_Mutation p.Q786* 0.37 TCGA-ER-A193-06 3 46062686 46062686 G A XCR1 Missense_Mutation p.R252W 0.32 deleterious(0.01) possibly_damaging(0.606) TCGA-ER-A193-06 3 46485071 46485071 C T LTF Missense_Mutation p.E506K 0.26 tolerated(0.48) benign(0.012) TCGA-ER-A193-06 3 46873503 46873503 G A PRSS42 Missense_Mutation p.L219F 0.30 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 3 46944953 46944953 G A PTH1R Missense_Mutation p.G530D 0.28 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 3 48612933 48612933 C T COL7A1 Missense_Mutation p.D2007N 0.26 unknown(0) TCGA-ER-A193-06 3 48921519 48921519 G A SLC25A20 Silent p.I79I 0.36 TCGA-ER-A193-06 3 49148963 49148963 G C USP19 Missense_Mutation p.P1061A 0.23 tolerated(0.19) benign(0.008) TCGA-ER-A193-06 3 49694838 49694838 G A BSN Missense_Mutation p.E2617K 0.46 unknown(0) TCGA-ER-A193-06 3 49713486 49713486 C T APEH Intron 0.32 TCGA-ER-A193-06 3 49753392 49753392 C T RNF123 Silent p.F1096F 0.33 TCGA-ER-A193-06 3 49756836 49756836 C T AMIGO3 Silent p.P21P 0.28 TCGA-ER-A193-06 3 51697086 51697086 C T RAD54L2 Missense_Mutation p.P1352S 0.26 tolerated_low_confidence(0.79) benign(0.008) TCGA-ER-A193-06 3 52084953 52084953 C T DUSP7 Missense_Mutation p.D380N 0.43 deleterious(0.05) probably_damaging(0.997) TCGA-ER-A193-06 3 52283764 52283764 C T PPM1M Silent p.S226S 0.47 TCGA-ER-A193-06 3 52398929 52398929 C T DNAH1 Silent p.I1804I 0.29 TCGA-ER-A193-06 3 52422227 52422227 C T DNAH1 Silent p.I3016I 0.47 TCGA-ER-A193-06 3 52422519 52422519 A C DNAH1 Missense_Mutation p.D3086A 0.25 benign(0.006) TCGA-ER-A193-06 3 52550252 52550252 G A STAB1 Missense_Mutation p.G1381E 0.42 deleterious(0.04) possibly_damaging(0.558) TCGA-ER-A193-06 3 52818456 52818456 G A ITIH1 Missense_Mutation p.R457K 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 3 53138009 53138009 A C RFT1 Silent p.A354A 0.27 TCGA-ER-A193-06 3 53213622 53213622 C T PRKCD Missense_Mutation p.P49S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 3 53326711 53326711 G A DCP1A Silent p.F257F 0.24 TCGA-ER-A193-06 3 55052317 55052317 G A CACNA2D3 Missense_Mutation p.G987E 0.34 deleterious(0.03) probably_damaging(1) TCGA-ER-A193-06 3 55508524 55508524 C T WNT5A Silent p.R175R 0.40 TCGA-ER-A193-06 3 56330206 56330206 A - ERC2 Frame_Shift_Del p.K307Nfs*38 0.23 TCGA-ER-A193-06 3 56468846 56468846 G A ERC2 Silent p.L64L 0.28 TCGA-ER-A193-06 3 57107844 57107844 C G SPATA12 Missense_Mutation p.T41S 0.31 tolerated_low_confidence(0.43) benign(0.135) TCGA-ER-A193-06 3 57271521 57271521 A T APPL1 Missense_Mutation p.N52I 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 3 57291392 57291392 G C APPL1 Missense_Mutation p.D456H 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 3 62459850 62459850 C A CADPS Nonsense_Mutation p.E1159* 0.29 TCGA-ER-A193-06 3 62739277 62739277 C T CADPS Missense_Mutation p.A243T 0.33 tolerated(0.42) possibly_damaging(0.483) TCGA-ER-A193-06 3 65342697 65342697 C T MAGI1 Missense_Mutation p.D1249N 0.39 deleterious(0.01) benign(0.422) TCGA-ER-A193-06 3 67054070 67054070 G A KBTBD8 Missense_Mutation p.E227K 0.32 tolerated(0.75) benign(0.008) TCGA-ER-A193-06 3 7620981 7620981 G A GRM7 Silent p.T796T 0.20 TCGA-ER-A193-06 3 77666749 77666749 G A ROBO2 Missense_Mutation p.D1143N 0.19 deleterious(0.04) possibly_damaging(0.539) TCGA-ER-A193-06 3 85984956 85984956 C T CADM2 Missense_Mutation p.P240L 0.29 deleterious(0) possibly_damaging(0.891) TCGA-ER-A193-06 3 88040349 88040349 A T HTR1F Silent p.I150I 0.28 TCGA-ER-A193-06 3 88041085 88041085 T C HTR1F 3'UTR 0.25 TCGA-ER-A193-06 3 88041088 88041088 T C HTR1F 3'UTR 0.25 TCGA-ER-A193-06 3 93733721 93733721 C T STX19 Silent p.R131R 0.26 TCGA-ER-A193-06 3 9512293 9512293 C T SETD5 Missense_Mutation p.P959S 0.33 tolerated(0.66) benign(0.001) TCGA-ER-A193-06 3 97731256 97731256 G A GABRR3 RNA 0.25 TCGA-ER-A193-06 3 97868450 97868450 C T OR5H14 Missense_Mutation p.S74L 0.36 deleterious(0) probably_damaging(0.988) TCGA-ER-A193-06 3 98251496 98251496 C T GPR15 Missense_Mutation p.P207S 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 3 99513110 99513110 C T COL8A1 Missense_Mutation p.P122L 0.37 deleterious(0.04) unknown(0) TCGA-ER-A193-06 4 100789392 100789392 C T DAPP1 3'UTR 0.15 TCGA-ER-A193-06 4 104511147 104511147 G A TACR3 Nonsense_Mutation p.R364* 0.30 TCGA-ER-A193-06 4 10509591 10509591 C T CLNK Missense_Mutation p.E326K 0.29 tolerated(0.09) benign(0.344) TCGA-ER-A193-06 4 106155143 106155143 G T TET2 Missense_Mutation p.S15I 0.21 deleterious(0) probably_damaging(0.968) TCGA-ER-A193-06 4 106155145 106155145 C T TET2 Missense_Mutation p.P16S 0.22 deleterious(0.03) benign(0.197) TCGA-ER-A193-06 4 106155146 106155146 C T TET2 Missense_Mutation p.P16L 0.22 deleterious(0) possibly_damaging(0.801) TCGA-ER-A193-06 4 107845144 107845144 G A DKK2 Silent p.S249S 0.35 TCGA-ER-A193-06 4 109680978 109680978 T C ETNPPL Missense_Mutation p.I88V 0.37 deleterious(0.05) benign(0.021) TCGA-ER-A193-06 4 110667517 110667517 G A CFI Silent p.I430I 0.18 TCGA-ER-A193-06 4 110743579 110743579 G A GAR1 Missense_Mutation p.R169K 0.19 tolerated_low_confidence(1) unknown(0) TCGA-ER-A193-06 4 11401009 11401009 G A HS3ST1 Silent p.F207F 0.45 TCGA-ER-A193-06 4 114376973 114376973 G A CAMK2D Missense_Mutation p.P480S 0.32 tolerated_low_confidence(0.99) benign(0.002) TCGA-ER-A193-06 4 115754843 115754843 C T NDST4 Missense_Mutation p.R772K 0.19 tolerated(0.51) probably_damaging(0.965) TCGA-ER-A193-06 4 119736191 119736191 G A SEC24D Missense_Mutation p.P265S 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 4 119947923 119947923 C T SYNPO2 Silent p.L133L 0.19 TCGA-ER-A193-06 4 119948253 119948253 G A SYNPO2 Silent p.S243S 0.15 TCGA-ER-A193-06 4 123161272 123161272 C T KIAA1109 Silent p.L1479L 0.30 TCGA-ER-A193-06 4 123161273 123161273 T C KIAA1109 Missense_Mutation p.L1479P 0.30 benign(0.229) TCGA-ER-A193-06 4 123237932 123237932 G A KIAA1109 Missense_Mutation p.G3529R 0.13 benign(0.09) TCGA-ER-A193-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.44 probably_damaging(0.999) TCGA-ER-A193-06 4 126239997 126239997 C T FAT4 Missense_Mutation p.H811Y 0.18 possibly_damaging(0.522) TCGA-ER-A193-06 4 126336719 126336719 G A FAT4 Missense_Mutation p.E2201K 0.22 possibly_damaging(0.472) TCGA-ER-A193-06 4 128632131 128632131 C T INTU Silent p.I811I 0.27 TCGA-ER-A193-06 4 138442640 138442640 G A PCDH18 Missense_Mutation p.S984F 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-ER-A193-06 4 141327157 141327157 G A CLGN Missense_Mutation p.H120Y 0.24 deleterious(0.04) possibly_damaging(0.499) TCGA-ER-A193-06 4 141832226 141832226 A T RNF150 Intron 0.38 TCGA-ER-A193-06 4 144920579 144920579 G A GYPB Missense_Mutation p.R54C 0.22 tolerated(0.06) benign(0.385) TCGA-ER-A193-06 4 145581006 145581006 T C HHIP Intron 0.23 TCGA-ER-A193-06 4 151749501 151749501 G A LRBA Missense_Mutation p.P1668S 0.37 tolerated_low_confidence(0.49) benign(0.004) TCGA-ER-A193-06 4 154191564 154191564 A G TRIM2 Silent p.P36P 0.28 TCGA-ER-A193-06 4 155505503 155505503 C T FGA Missense_Mutation p.A792T 0.34 tolerated(0.33) benign(0.145) TCGA-ER-A193-06 4 155507206 155507206 G A FGA Missense_Mutation p.R459C 0.16 deleterious(0) probably_damaging(0.98) TCGA-ER-A193-06 4 155507418 155507418 G A FGA Missense_Mutation p.S388F 0.28 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-ER-A193-06 4 155720234 155720234 A C RBM46 Missense_Mutation p.K307T 0.17 deleterious(0.02) probably_damaging(0.987) TCGA-ER-A193-06 4 158256915 158256915 C T GRIA2 Silent p.I453I 0.42 TCGA-ER-A193-06 4 158262423 158262423 T C GRIA2 Missense_Mutation p.S618P 0.23 deleterious(0.01) benign(0.113) TCGA-ER-A193-06 4 15937826 15937826 G A FGFBP1 Missense_Mutation p.P144S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 4 159638288 159638288 A G PPID Missense_Mutation p.F133S 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 4 162402207 162402207 G A FSTL5 Missense_Mutation p.L525F 0.41 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 4 162402208 162402208 G A FSTL5 Silent p.V524V 0.40 TCGA-ER-A193-06 4 164247100 164247100 G A NPY1R Missense_Mutation p.P203S 0.22 deleterious(0.04) probably_damaging(0.951) TCGA-ER-A193-06 4 164247183 164247183 A T NPY1R Missense_Mutation p.I175N 0.41 deleterious(0.03) benign(0.435) TCGA-ER-A193-06 4 164271582 164271582 C T NPY5R Missense_Mutation p.L53F 0.49 deleterious(0.01) probably_damaging(0.935) TCGA-ER-A193-06 4 164506997 164506997 G A MARCH1 Silent p.S109S 0.28 TCGA-ER-A193-06 4 165891019 165891019 C T TRIM61 Missense_Mutation p.D46N 0.17 deleterious(0.04) possibly_damaging(0.811) TCGA-ER-A193-06 4 167012404 167012404 C T TLL1 Missense_Mutation p.P856L 0.25 deleterious(0.01) benign(0.133) TCGA-ER-A193-06 4 167658649 167658649 C T SPOCK3 Missense_Mutation p.M370I 0.24 tolerated(0.11) benign(0.001) TCGA-ER-A193-06 4 169632945 169632945 G A PALLD Missense_Mutation p.G612E 0.20 deleterious(0.01) benign(0.147) TCGA-ER-A193-06 4 173852374 173852374 G A GALNTL6 Silent p.R368R 0.08 TCGA-ER-A193-06 4 17805434 17805434 G A DCAF16 Missense_Mutation p.P111S 0.33 tolerated_low_confidence(0.13) probably_damaging(0.932) TCGA-ER-A193-06 4 183594198 183594198 T A TENM3 Missense_Mutation p.D384E 0.55 deleterious(0.05) benign(0.009) TCGA-ER-A193-06 4 183600924 183600924 C T TENM3 Missense_Mutation p.H478Y 0.35 deleterious(0.01) benign(0.014) TCGA-ER-A193-06 4 186381146 186381146 T A CCDC110 Missense_Mutation p.N199Y 0.23 deleterious(0.01) possibly_damaging(0.813) TCGA-ER-A193-06 4 187179221 187179221 G A KLKB1 Missense_Mutation p.R591H 0.15 tolerated(1) benign(0.001) TCGA-ER-A193-06 4 187549860 187549860 A T FAT1 Missense_Mutation p.Y1461N 0.30 probably_damaging(0.997) TCGA-ER-A193-06 4 189063546 189063546 G A TRIML1 Silent p.E215E 0.38 TCGA-ER-A193-06 4 20618763 20618763 G A SLIT2 Missense_Mutation p.E1360K 0.38 tolerated(0.12) benign(0.029) TCGA-ER-A193-06 4 25125674 25125674 C T SEPSECS Missense_Mutation p.R462K 0.21 tolerated(0.74) benign(0) TCGA-ER-A193-06 4 25675988 25675988 C T SLC34A2 Silent p.I429I 0.12 TCGA-ER-A193-06 4 26756637 26756637 C T TBC1D19 3'UTR 0.11 TCGA-ER-A193-06 4 2955286 2955286 G A NOP14 Silent p.S233S 0.37 TCGA-ER-A193-06 4 3109019 3109019 C T HTT Silent p.L206L 0.18 TCGA-ER-A193-06 4 3319336 3319336 C T RGS12 Missense_Mutation p.P480L 0.28 tolerated(0.12) benign(0.001) TCGA-ER-A193-06 4 3478185 3478185 G A DOK7 Missense_Mutation p.G150R 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 4 36168569 36168569 G A ARAP2 Missense_Mutation p.P653L 0.20 deleterious(0.03) probably_damaging(0.967) TCGA-ER-A193-06 4 39482269 39482269 C T LIAS 3'Flank 0.52 TCGA-ER-A193-06 4 40104726 40104726 C T N4BP2 Nonsense_Mutation p.Q421* 0.15 TCGA-ER-A193-06 4 40245307 40245307 G A RHOH Missense_Mutation p.E101K 0.19 deleterious(0) probably_damaging(0.992) TCGA-ER-A193-06 4 40440230 40440230 G C RBM47 Silent p.A227A 0.30 TCGA-ER-A193-06 4 46930291 46930291 A G GABRA4 Missense_Mutation p.V539A 0.20 tolerated(0.22) probably_damaging(0.992) TCGA-ER-A193-06 4 47405379 47405379 G A GABRB1 Missense_Mutation p.E197K 0.20 tolerated(0.37) benign(0.045) TCGA-ER-A193-06 4 48597683 48597683 G A FRYL Missense_Mutation p.P391L 0.21 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 4 49005875 49005875 G A CWH43 Missense_Mutation p.G309E 0.12 tolerated(0.08) benign(0.36) TCGA-ER-A193-06 4 520864 520864 C T PIGG Silent p.A702A 0.19 TCGA-ER-A193-06 4 54310258 54310258 C T FIP1L1 Missense_Mutation p.P425S 0.32 tolerated(0.14) benign(0.026) TCGA-ER-A193-06 4 57883317 57883317 T C POLR2B Silent p.A688A 0.48 TCGA-ER-A193-06 4 5961233 5961233 G A C4orf50 Nonsense_Mutation p.Q708* 0.14 TCGA-ER-A193-06 4 62363054 62363054 C T LPHN3 Missense_Mutation p.P15S 0.23 tolerated(0.48) benign(0.272) TCGA-ER-A193-06 4 62813953 62813953 C T LPHN3 Silent p.L854L 0.39 TCGA-ER-A193-06 4 6302781 6302781 C T WFS1 Missense_Mutation p.P420L 0.34 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 4 650789 650789 G A PDE6B Missense_Mutation p.E412K 0.35 deleterious(0.05) possibly_damaging(0.705) TCGA-ER-A193-06 4 65147237 65147237 G A TECRL Silent p.F291F 0.37 TCGA-ER-A193-06 4 65194272 65194272 G A TECRL Missense_Mutation p.P97S 0.47 deleterious(0.04) probably_damaging(1) TCGA-ER-A193-06 4 680023 680023 C T MFSD7 Silent p.G121G 0.31 TCGA-ER-A193-06 4 68547871 68547871 G A UBA6 Silent p.F65F 0.26 TCGA-ER-A193-06 4 68691497 68691497 C T TMPRSS11D Missense_Mutation p.G350R 0.44 tolerated(0.56) probably_damaging(0.978) TCGA-ER-A193-06 4 69093564 69093564 C T TMPRSS11B 3'UTR 0.55 TCGA-ER-A193-06 4 69682275 69682275 G A UGT2B10 Missense_Mutation p.E180K 0.35 deleterious(0.02) probably_damaging(0.954) TCGA-ER-A193-06 4 69796941 69796941 C T UGT2A3 Missense_Mutation p.G339E 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 4 69798379 69798379 G A UGT2A3 Silent p.I321I 0.33 TCGA-ER-A193-06 4 69964396 69964396 C T UGT2B7 Missense_Mutation p.P287L 0.11 deleterious(0) probably_damaging(0.921) TCGA-ER-A193-06 4 70079978 70079978 G A UGT2B11 Missense_Mutation p.P155S 0.12 deleterious(0.05) probably_damaging(1) TCGA-ER-A193-06 4 70080284 70080284 C T UGT2B11 Missense_Mutation p.V53M 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 4 70361463 70361463 T C UGT2B4 Missense_Mutation p.I39M 0.43 tolerated(1) benign(0.026) TCGA-ER-A193-06 4 71024290 71024290 G A C4orf40 Silent p.R107R 0.37 TCGA-ER-A193-06 4 71275399 71275399 G A PROL1 Silent p.R118R 0.18 TCGA-ER-A193-06 4 71509241 71509241 C T ENAM Missense_Mutation p.L700F 0.18 tolerated(0.17) benign(0.067) TCGA-ER-A193-06 4 72620730 72620730 C T GC Missense_Mutation p.D396N 0.24 tolerated(0.25) benign(0.002) TCGA-ER-A193-06 4 73013483 73013483 T C NPFFR2 Missense_Mutation p.L508S 0.22 deleterious_low_confidence(0.01) benign(0.261) TCGA-ER-A193-06 4 74442203 74442203 G A RASSF6 Missense_Mutation p.H320Y 0.40 deleterious(0) possibly_damaging(0.623) TCGA-ER-A193-06 4 75091075 75091075 C T MTHFD2L Missense_Mutation p.H257Y 0.14 tolerated(0.46) possibly_damaging(0.811) TCGA-ER-A193-06 4 77033592 77033592 G A ART3 Missense_Mutation p.G364S 0.16 tolerated_low_confidence(0.08) benign(0.275) TCGA-ER-A193-06 4 7716918 7716918 G A SORCS2 Missense_Mutation p.G711E 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A193-06 4 78804427 78804427 G A MRPL1 Missense_Mutation p.E59K 0.42 tolerated(0.54) benign(0.077) TCGA-ER-A193-06 4 79258883 79258883 C T FRAS1 Silent p.S778S 0.21 TCGA-ER-A193-06 4 79334179 79334179 G A FRAS1 Silent p.A1455A 0.22 TCGA-ER-A193-06 4 79847831 79847831 G A PAQR3 Silent p.I182I 0.18 TCGA-ER-A193-06 4 80328892 80328892 G A GK2 Missense_Mutation p.R155C 0.28 deleterious(0.01) benign(0.248) TCGA-ER-A193-06 4 81884785 81884785 C T C4orf22 3'Flank 0.42 TCGA-ER-A193-06 4 81967371 81967371 C T BMP3 Missense_Mutation p.P266S 0.13 tolerated(0.23) benign(0.15) TCGA-ER-A193-06 4 82070042 82070042 G A PRKG2 Nonsense_Mutation p.R384* 0.16 TCGA-ER-A193-06 4 84348796 84348796 G A HELQ Missense_Mutation p.L866F 0.14 tolerated(0.67) benign(0.002) TCGA-ER-A193-06 4 8469678 8469678 C T TRMT44 Missense_Mutation p.S511F 0.49 deleterious(0.01) benign(0.321) TCGA-ER-A193-06 4 87770009 87770009 G A SLC10A6 Missense_Mutation p.A87V 0.33 tolerated(0.29) benign(0.028) TCGA-ER-A193-06 4 88235055 88235055 G A HSD17B13 Silent p.A205A 0.21 TCGA-ER-A193-06 4 88411446 88411446 C T SPARCL1 Missense_Mutation p.D504N 0.31 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 4 90650377 90650377 G A SNCA Missense_Mutation p.P120S 0.34 deleterious_low_confidence(0.02) benign(0.422) TCGA-ER-A193-06 4 95497158 95497158 C T PDLIM5 Missense_Mutation p.S119F 0.22 deleterious(0.03) benign(0.003) TCGA-ER-A193-06 4 96163673 96163673 C T UNC5C Missense_Mutation p.E339K 0.29 deleterious(0.03) possibly_damaging(0.861) TCGA-ER-A193-06 4 96761622 96761622 C T PDHA2 Silent p.N107N 0.16 TCGA-ER-A193-06 4 96761623 96761623 C T PDHA2 Missense_Mutation p.P108S 0.16 tolerated(0.08) benign(0.046) TCGA-ER-A193-06 5 100147685 100147685 A G ST8SIA4 Missense_Mutation p.Y316H 0.31 probably_damaging(0.999) TCGA-ER-A193-06 5 100222291 100222291 G A ST8SIA4 Missense_Mutation p.R87C 0.39 benign(0.232) TCGA-ER-A193-06 5 11023081 11023081 G A CTNND2 Silent p.A933A 0.35 TCGA-ER-A193-06 5 110439611 110439611 C T WDR36 Missense_Mutation p.R298C 0.21 deleterious(0) probably_damaging(0.991) TCGA-ER-A193-06 5 111530295 111530295 G A EPB41L4A Missense_Mutation p.S491F 0.15 deleterious(0) possibly_damaging(0.653) TCGA-ER-A193-06 5 111595653 111595653 G A EPB41L4A Silent p.F222F 0.32 TCGA-ER-A193-06 5 118970014 118970014 G A FAM170A Missense_Mutation p.E191K 0.24 tolerated(0.15) possibly_damaging(0.527) TCGA-ER-A193-06 5 121488390 121488390 C T ZNF474 Silent p.S235S 0.36 TCGA-ER-A193-06 5 122165426 122165426 T G SNX2 3'UTR 0.44 TCGA-ER-A193-06 5 122930761 122930761 C A CSNK1G3 Missense_Mutation p.S372Y 0.22 deleterious(0.04) benign(0.103) TCGA-ER-A193-06 5 123982551 123982551 T C ZNF608 Missense_Mutation p.K1176E 0.30 tolerated(0.5) possibly_damaging(0.558) TCGA-ER-A193-06 5 128359404 128359404 G A SLC27A6 Splice_Site p.X419_splice 0.42 TCGA-ER-A193-06 5 128365326 128365326 G A SLC27A6 Missense_Mutation p.D537N 0.36 tolerated(0.15) benign(0.115) TCGA-ER-A193-06 5 134059340 134059340 C T SEC24A Silent p.F1049F 0.24 TCGA-ER-A193-06 5 134102645 134102645 G A DDX46 Missense_Mutation p.R82Q 0.32 tolerated(0.06) unknown(0) TCGA-ER-A193-06 5 135283183 135283183 A T LECT2 Missense_Mutation p.F98Y 0.26 tolerated(0.28) benign(0.199) TCGA-ER-A193-06 5 135587547 135587547 C T TRPC7 Missense_Mutation p.E457K 0.34 deleterious(0) possibly_damaging(0.562) TCGA-ER-A193-06 5 135610433 135610433 G A TRPC7 Silent p.F352F 0.37 TCGA-ER-A193-06 5 135693021 135693021 C T TRPC7 Missense_Mutation p.E19K 0.32 deleterious_low_confidence(0.01) benign(0.094) TCGA-ER-A193-06 5 13719100 13719100 C T DNAH5 Missense_Mutation p.M4130I 0.32 benign(0.072) TCGA-ER-A193-06 5 13721305 13721305 A C DNAH5 Missense_Mutation p.V4028G 0.36 possibly_damaging(0.637) TCGA-ER-A193-06 5 13735385 13735385 G A DNAH5 Silent p.I3872I 0.20 TCGA-ER-A193-06 5 137423581 137423581 G A WNT8A Missense_Mutation p.E110K 0.30 tolerated(0.06) possibly_damaging(0.782) TCGA-ER-A193-06 5 13769134 13769134 C T DNAH5 Missense_Mutation p.A3278T 0.31 possibly_damaging(0.787) TCGA-ER-A193-06 5 13771003 13771003 C T DNAH5 Missense_Mutation p.D3154N 0.33 possibly_damaging(0.822) TCGA-ER-A193-06 5 137726747 137726747 C T KDM3B Missense_Mutation p.L476F 0.24 tolerated_low_confidence(0.27) benign(0.296) TCGA-ER-A193-06 5 13811790 13811790 C T DNAH5 Missense_Mutation p.S2458N 0.41 benign(0.002) TCGA-ER-A193-06 5 138208914 138208914 T C LRRTM2 Missense_Mutation p.K446E 0.25 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 5 13865927 13865927 A T DNAH5 Missense_Mutation p.L1402H 0.26 probably_damaging(0.963) TCGA-ER-A193-06 5 13876922 13876922 G A DNAH5 Silent p.T1089T 0.23 TCGA-ER-A193-06 5 13920635 13920635 C T DNAH5 Missense_Mutation p.G251E 0.30 benign(0) TCGA-ER-A193-06 5 13920673 13920673 C T DNAH5 Silent p.T238T 0.26 TCGA-ER-A193-06 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.28 possibly_damaging(0.555) TCGA-ER-A193-06 5 13923478 13923478 C T DNAH5 Missense_Mutation p.E117K 0.40 benign(0.305) TCGA-ER-A193-06 5 139494086 139494086 C T PURA Missense_Mutation p.A107V 0.19 deleterious(0.04) possibly_damaging(0.789) TCGA-ER-A193-06 5 139508158 139508158 C T IGIP Missense_Mutation p.P33S 0.35 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-ER-A193-06 5 139747434 139747434 G A SLC4A9 Missense_Mutation p.E793K 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 5 139884528 139884528 C T ANKHD1 Missense_Mutation p.P1043S 0.25 unknown(0) TCGA-ER-A193-06 5 139893013 139893013 A T ANKHD1 Silent p.A1422A 0.32 TCGA-ER-A193-06 5 139941205 139941205 G A APBB3 Silent p.A245A 0.24 TCGA-ER-A193-06 5 139947248 139947248 G A SLC35A4 Missense_Mutation p.G165E 0.33 tolerated(0.31) benign(0.025) TCGA-ER-A193-06 5 140175844 140175844 C T PCDHA2 Missense_Mutation p.S432L 0.28 tolerated_low_confidence(0.06) benign(0.058) TCGA-ER-A193-06 5 140182268 140182268 G A PCDHA3 Missense_Mutation p.E496K 0.37 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-ER-A193-06 5 140183094 140183094 C T PCDHA3 Missense_Mutation p.A771V 0.35 tolerated_low_confidence(0.17) possibly_damaging(0.813) TCGA-ER-A193-06 5 140188271 140188271 G A PCDHA4 Missense_Mutation p.G500E 0.28 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-ER-A193-06 5 140188286 140188286 C T PCDHA4 Missense_Mutation p.S505L 0.33 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-ER-A193-06 5 140202749 140202749 G A PCDHA5 Silent p.V463V 0.26 TCGA-ER-A193-06 5 140208831 140208831 G A PCDHA6 Silent p.V385V 0.31 TCGA-ER-A193-06 5 140214073 140214073 C T PCDHA7 Silent p.V35V 0.31 TCGA-ER-A193-06 5 140214074 140214074 C T PCDHA7 Missense_Mutation p.P36S 0.30 tolerated_low_confidence(0.08) benign(0.107) TCGA-ER-A193-06 5 140215791 140215791 C T PCDHA7 Missense_Mutation p.S608L 0.29 tolerated_low_confidence(0.06) benign(0.358) TCGA-ER-A193-06 5 140220982 140220982 G A PCDHA8 Missense_Mutation p.V26M 0.33 tolerated_low_confidence(0.12) benign(0.012) TCGA-ER-A193-06 5 140220983 140220983 T A PCDHA8 Missense_Mutation p.V26E 0.32 tolerated_low_confidence(0.06) benign(0.002) TCGA-ER-A193-06 5 140222087 140222087 C T PCDHA8 Missense_Mutation p.P394L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-ER-A193-06 5 140480684 140480684 G A PCDHB3 Missense_Mutation p.V151I 0.24 tolerated_low_confidence(0.19) benign(0.003) TCGA-ER-A193-06 5 140481409 140481409 C T PCDHB3 Silent p.F392F 0.28 TCGA-ER-A193-06 5 140558910 140558910 T C PCDHB8 Missense_Mutation p.L432P 0.10 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-ER-A193-06 5 140712561 140712561 C T PCDHGA1 Silent p.F770F 0.33 TCGA-ER-A193-06 5 140724815 140724815 G A PCDHGA3 Silent p.V405V 0.31 TCGA-ER-A193-06 5 140725259 140725259 G A PCDHGA3 Silent p.L553L 0.36 TCGA-ER-A193-06 5 140741262 140741262 C T PCDHGB2 Silent p.F520F 0.28 TCGA-ER-A193-06 5 140744132 140744132 C T PCDHGA5 Missense_Mutation p.P79S 0.22 deleterious_low_confidence(0.04) benign(0.219) TCGA-ER-A193-06 5 140772779 140772779 C T PCDHGA8 Silent p.F133F 0.26 TCGA-ER-A193-06 5 143586873 143586873 C T KCTD16 Missense_Mutation p.S199F 0.38 deleterious(0) benign(0.326) TCGA-ER-A193-06 5 145252312 145252312 G A GRXCR2 Nonsense_Mutation p.Q74* 0.32 TCGA-ER-A193-06 5 146077636 146077636 G A PPP2R2B Silent p.F83F 0.33 TCGA-ER-A193-06 5 14711411 14711411 C G ANKH Missense_Mutation p.K458N 0.27 tolerated_low_confidence(0.24) benign(0) TCGA-ER-A193-06 5 147661795 147661795 G A SPINK13 Splice_Site p.X79_splice 0.36 TCGA-ER-A193-06 5 149212371 149212371 G A PPARGC1B Silent p.K245K 0.25 TCGA-ER-A193-06 5 149375197 149375197 T C TIGD6 Missense_Mutation p.K239E 0.31 deleterious(0.01) benign(0.028) TCGA-ER-A193-06 5 149901077 149901077 C T NDST1 Silent p.V87V 0.26 TCGA-ER-A193-06 5 150867572 150867572 G A SLC36A1 Silent p.L396L 0.36 TCGA-ER-A193-06 5 150930330 150930330 G A FAT2 Missense_Mutation p.L1467F 0.20 benign(0.22) TCGA-ER-A193-06 5 151051159 151051159 G A SPARC Missense_Mutation p.P102L 0.30 deleterious(0) benign(0.097) TCGA-ER-A193-06 5 151051160 151051160 G A SPARC Missense_Mutation p.P102S 0.29 deleterious(0.01) benign(0.12) TCGA-ER-A193-06 5 151234728 151234728 C T GLRA1 Silent p.T190T 0.40 TCGA-ER-A193-06 5 153078450 153078450 G A GRIA1 Silent p.K433K 0.33 TCGA-ER-A193-06 5 153175112 153175112 G A GRIA1 Intron 0.26 TCGA-ER-A193-06 5 153372608 153372608 G A FAM114A2 Silent p.I482I 0.23 TCGA-ER-A193-06 5 153709265 153709265 G A GALNT10 Missense_Mutation p.E179K 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 5 156378700 156378700 G A TIMD4 Missense_Mutation p.P168S 0.31 tolerated(0.09) possibly_damaging(0.634) TCGA-ER-A193-06 5 156768097 156768097 C T CYFIP2 Missense_Mutation p.P843S 0.29 tolerated(0.98) benign(0.014) TCGA-ER-A193-06 5 156770210 156770210 G A FNDC9 Missense_Mutation p.S112F 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-ER-A193-06 5 156770394 156770394 C T FNDC9 Missense_Mutation p.E51K 0.37 tolerated(0.06) probably_damaging(0.944) TCGA-ER-A193-06 5 157178438 157178438 C T LSM11 Silent p.I163I 0.23 TCGA-ER-A193-06 5 160059330 160059330 C T ATP10B Missense_Mutation p.E476K 0.21 deleterious(0.04) benign(0.41) TCGA-ER-A193-06 5 160063277 160063277 G A ATP10B Missense_Mutation p.P347L 0.26 tolerated(0.7) benign(0.364) TCGA-ER-A193-06 5 161524745 161524745 G A GABRG2 Silent p.G143G 0.34 TCGA-ER-A193-06 5 167850861 167850861 C T WWC1 Missense_Mutation p.S533F 0.32 deleterious(0.04) probably_damaging(1) TCGA-ER-A193-06 5 167894896 167894896 A G WWC1 Missense_Mutation p.R1074G 0.36 deleterious(0) probably_damaging(0.948) TCGA-ER-A193-06 5 169468063 169468063 C T DOCK2 Silent p.L1224L 0.25 TCGA-ER-A193-06 5 170139870 170139870 G A KCNIP1 Nonsense_Mutation p.W25* 0.36 TCGA-ER-A193-06 5 170145872 170145872 C T KCNIP1 Nonsense_Mutation p.R69* 0.18 TCGA-ER-A193-06 5 171471913 171471913 G A STK10 Silent p.F960F 0.27 TCGA-ER-A193-06 5 173337594 173337594 T G CPEB4 Missense_Mutation p.N398K 0.29 tolerated_low_confidence(0.07) benign(0.001) TCGA-ER-A193-06 5 175717911 175717911 C T SIMC1 Intron 0.35 TCGA-ER-A193-06 5 176003025 176003025 G A CDHR2 Missense_Mutation p.D345N 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 5 176958471 176958471 G A FAM193B Intron 0.57 TCGA-ER-A193-06 5 176958472 176958472 G A FAM193B Intron 0.57 TCGA-ER-A193-06 5 180219617 180219617 G A MGAT1 Missense_Mutation p.R119W 0.23 probably_damaging(0.923) TCGA-ER-A193-06 5 180432655 180432655 T G BTNL3 Missense_Mutation p.F395C 0.20 deleterious(0.02) possibly_damaging(0.814) TCGA-ER-A193-06 5 19473300 19473300 G A CDH18 3'UTR 0.30 TCGA-ER-A193-06 5 19612677 19612677 C T CDH18 Missense_Mutation p.R226K 0.33 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 5 22142674 22142674 G A CDH12 Intron 0.48 TCGA-ER-A193-06 5 23509092 23509092 C T PRDM9 5'UTR 0.56 TCGA-ER-A193-06 5 23526506 23526506 C T PRDM9 Nonsense_Mutation p.Q437* 0.20 TCGA-ER-A193-06 5 24491745 24491745 G A CDH10 Missense_Mutation p.P606S 0.25 tolerated(0.58) probably_damaging(0.968) TCGA-ER-A193-06 5 31983420 31983420 G A PDZD2 Silent p.K212K 0.30 TCGA-ER-A193-06 5 32088468 32088468 G A PDZD2 Silent p.P1638P 0.31 TCGA-ER-A193-06 5 33561138 33561138 C T ADAMTS12 Nonsense_Mutation p.W1373* 0.39 TCGA-ER-A193-06 5 35875785 35875785 T A IL7R Intron 0.33 TCGA-ER-A193-06 5 36049436 36049436 G A UGT3A2 Missense_Mutation p.S133F 0.30 tolerated(0.73) benign(0.104) TCGA-ER-A193-06 5 37181013 37181013 G A C5orf42 Missense_Mutation p.P1839L 0.30 tolerated(0.14) benign(0.026) TCGA-ER-A193-06 5 37816031 37816031 A C GDNF Missense_Mutation p.L137V 0.20 deleterious(0) probably_damaging(0.981) TCGA-ER-A193-06 5 38431283 38431283 G A EGFLAM Missense_Mutation p.E687K 0.38 tolerated(0.17) possibly_damaging(0.72) TCGA-ER-A193-06 5 38481743 38481743 C T LIFR Missense_Mutation p.G1083E 0.37 tolerated(0.13) possibly_damaging(0.858) TCGA-ER-A193-06 5 38506097 38506097 G T LIFR Missense_Mutation p.P401T 0.24 tolerated(0.09) benign(0.003) TCGA-ER-A193-06 5 38506159 38506159 A G LIFR Missense_Mutation p.V380A 0.24 tolerated(0.06) benign(0.056) TCGA-ER-A193-06 5 41000800 41000800 G A MROH2B Missense_Mutation p.P1444S 0.24 deleterious(0) possibly_damaging(0.511) TCGA-ER-A193-06 5 41018804 41018804 C T MROH2B Missense_Mutation p.E888K 0.28 tolerated(0.14) possibly_damaging(0.696) TCGA-ER-A193-06 5 41051193 41051193 C T MROH2B Splice_Site p.X411_splice 0.23 TCGA-ER-A193-06 5 41143057 41143057 C T C6 Missense_Mutation p.G892E 0.37 tolerated(1) benign(0.008) TCGA-ER-A193-06 5 41143058 41143058 C T C6 Missense_Mutation p.G892R 0.36 tolerated(0.15) possibly_damaging(0.494) TCGA-ER-A193-06 5 41382633 41382633 G A PLCXD3 Missense_Mutation p.S36F 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 5 41941382 41941382 G T FBXO4 Nonstop_Mutation p.*388Lext*12 0.27 TCGA-ER-A193-06 5 43174766 43174766 C T ZNF131 Missense_Mutation p.S434L 0.31 tolerated(0.32) benign(0.306) TCGA-ER-A193-06 5 43446276 43446276 T A C5orf28 3'UTR 0.47 TCGA-ER-A193-06 5 45262081 45262081 G A HCN1 Missense_Mutation p.S872F 0.27 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-ER-A193-06 5 49699028 49699028 C T EMB Silent p.K287K 0.26 TCGA-ER-A193-06 5 49724062 49724062 C T EMB Splice_Site p.X38_splice 0.26 TCGA-ER-A193-06 5 50685493 50685493 C T ISL1 Silent p.S164S 0.23 TCGA-ER-A193-06 5 52394491 52394491 A T MOCS2 Missense_Mutation p.Y170N 0.29 deleterious(0) probably_damaging(0.953) TCGA-ER-A193-06 5 54439467 54439467 G A CDC20B Silent p.S120S 0.31 TCGA-ER-A193-06 5 57755647 57755647 G A PLK2 Missense_Mutation p.S47F 0.24 tolerated_low_confidence(0.05) benign(0) TCGA-ER-A193-06 5 63256778 63256778 C T HTR1A Missense_Mutation p.E257K 0.26 tolerated(0.74) benign(0.142) TCGA-ER-A193-06 5 63803695 63803695 C T RGS7BP Missense_Mutation p.A108V 0.31 tolerated_low_confidence(0.51) possibly_damaging(0.682) TCGA-ER-A193-06 5 64267545 64267545 C T CWC27 Missense_Mutation p.P353L 0.23 tolerated(0.18) benign(0.002) TCGA-ER-A193-06 5 64483905 64483905 C T ADAMTS6 Missense_Mutation p.E950K 0.34 tolerated(0.82) benign(0.122) TCGA-ER-A193-06 5 6600042 6600042 C T NSUN2 Silent p.R767R 0.33 TCGA-ER-A193-06 5 66396278 66396278 C T MAST4 Nonsense_Mutation p.Q310* 0.21 TCGA-ER-A193-06 5 66459555 66459555 G A MAST4 Silent p.R1516R 0.29 TCGA-ER-A193-06 5 66480226 66480226 C T CD180 Missense_Mutation p.E149K 0.33 tolerated(0.66) benign(0.006) TCGA-ER-A193-06 5 70308419 70308419 G A NAIP Silent p.G108G 0.34 TCGA-ER-A193-06 5 70805966 70805966 G A BDP1 Missense_Mutation p.G1016E 0.31 tolerated(0.55) benign(0.021) TCGA-ER-A193-06 5 73045798 73045798 C T ARHGEF28 Missense_Mutation p.S57F 0.33 tolerated(0.39) benign(0.111) TCGA-ER-A193-06 5 73069757 73069757 C T ARHGEF28 Missense_Mutation p.L185F 0.44 tolerated(0.14) probably_damaging(0.909) TCGA-ER-A193-06 5 73163826 73163826 C A ARHGEF28 Missense_Mutation p.P760T 0.30 deleterious(0.01) probably_damaging(0.916) TCGA-ER-A193-06 5 74046476 74046476 G A GFM2 Silent p.T149T 0.37 TCGA-ER-A193-06 5 76128722 76128722 T A F2RL1 Missense_Mutation p.L97Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-ER-A193-06 5 76173556 76173556 G A S100Z Missense_Mutation p.D67N 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 5 78671949 78671949 C T HOMER1 Silent p.Q316Q 0.33 TCGA-ER-A193-06 5 7869218 7869218 G A MTRR 5'UTR 0.32 TCGA-ER-A193-06 5 79441966 79441966 G A SERINC5 Silent p.F395F 0.32 TCGA-ER-A193-06 5 79616671 79616671 C T SPZ1 Missense_Mutation p.R213C 0.38 tolerated(0.12) benign(0) TCGA-ER-A193-06 5 80363981 80363981 G A RASGRF2 Missense_Mutation p.E176K 0.23 tolerated(0.37) possibly_damaging(0.662) TCGA-ER-A193-06 5 80497237 80497237 G A RASGRF2 Missense_Mutation p.R961K 0.24 deleterious(0.04) benign(0.314) TCGA-ER-A193-06 5 80497238 80497238 G A RASGRF2 Silent p.R961R 0.23 TCGA-ER-A193-06 5 80600775 80600775 T A ZCCHC9 Missense_Mutation p.Y67N 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A193-06 5 89924421 89924421 G A GPR98 Silent p.G427G 0.32 TCGA-ER-A193-06 5 89938791 89938791 T C GPR98 Missense_Mutation p.L829P 0.28 possibly_damaging(0.902) TCGA-ER-A193-06 5 89979680 89979680 T C GPR98 Missense_Mutation p.F1981S 0.39 probably_damaging(0.976) TCGA-ER-A193-06 5 90101266 90101266 C T GPR98 Missense_Mutation p.P4943S 0.21 possibly_damaging(0.857) TCGA-ER-A193-06 5 90101267 90101267 C T GPR98 Missense_Mutation p.P4943L 0.21 possibly_damaging(0.908) TCGA-ER-A193-06 5 93076970 93076970 G A POU5F2 Silent p.L100L 0.28 TCGA-ER-A193-06 5 94353134 94353134 C T MCTP1 Missense_Mutation p.G259R 0.24 tolerated(0.71) benign(0.151) TCGA-ER-A193-06 5 95734685 95734685 C T PCSK1 Missense_Mutation p.G496R 0.23 deleterious(0.01) possibly_damaging(0.85) TCGA-ER-A193-06 6 100403968 100403968 G A MCHR2 Missense_Mutation p.S19F 0.32 deleterious(0.03) benign(0.049) TCGA-ER-A193-06 6 101847078 101847078 C T GRIK2 5'UTR 0.31 TCGA-ER-A193-06 6 10928656 10928656 C T SYCP2L Silent p.F487F 0.28 TCGA-ER-A193-06 6 109980446 109980454 CTCTTCTTC - AK9 In_Frame_Del p.E203_E205del 0.37 TCGA-ER-A193-06 6 112422109 112422109 C T FAM229B 3'UTR 0.27 TCGA-ER-A193-06 6 116720492 116720492 G A DSE Missense_Mutation p.E27K 0.29 tolerated_low_confidence(0.79) benign(0.004) TCGA-ER-A193-06 6 116944108 116944108 G A RSPH4A Silent p.K288K 0.28 TCGA-ER-A193-06 6 117700224 117700224 C T ROS1 Silent p.Q865Q 0.17 TCGA-ER-A193-06 6 118588184 118588184 C T SLC35F1 Silent p.V168V 0.30 TCGA-ER-A193-06 6 119341252 119341252 G A FAM184A Missense_Mutation p.S408L 0.36 tolerated(0.08) benign(0.013) TCGA-ER-A193-06 6 12125828 12125828 C T HIVEP1 Missense_Mutation p.P1934S 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A193-06 6 12161804 12161804 C T HIVEP1 Missense_Mutation p.P2207L 0.33 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 123369853 123369853 C T CLVS2 Silent p.F217F 0.32 TCGA-ER-A193-06 6 127517159 127517159 C T RSPO3 3'UTR 0.19 TCGA-ER-A193-06 6 127771437 127771437 C T KIAA0408 Missense_Mutation p.D66N 0.30 tolerated(0.37) benign(0.006) TCGA-ER-A193-06 6 127899834 127899834 G A C6orf58 Missense_Mutation p.R102K 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-ER-A193-06 6 128134578 128134578 C T THEMIS Missense_Mutation p.G403E 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-ER-A193-06 6 128134804 128134804 G A THEMIS Missense_Mutation p.P328S 0.27 tolerated(0.19) benign(0.187) TCGA-ER-A193-06 6 128643228 128643228 G A PTPRK Missense_Mutation p.R151W 0.23 deleterious(0) possibly_damaging(0.66) TCGA-ER-A193-06 6 131201289 131201289 A G EPB41L2 Silent p.L631L 0.21 TCGA-ER-A193-06 6 132173319 132173319 G A ENPP1 Silent p.E187E 0.38 TCGA-ER-A193-06 6 132873961 132873961 C T TAAR8 Silent p.L44L 0.31 TCGA-ER-A193-06 6 132939145 132939145 G A TAAR2 Missense_Mutation p.S67F 0.41 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 6 133849960 133849960 G A EYA4 3'UTR 0.31 TCGA-ER-A193-06 6 13612087 13612087 C T SIRT5 Missense_Mutation p.T308I 0.29 tolerated_low_confidence(0.19) benign(0.005) TCGA-ER-A193-06 6 136687023 136687023 C T MAP7 Missense_Mutation p.E397K 0.35 tolerated(0.19) probably_damaging(0.995) TCGA-ER-A193-06 6 136944029 136944029 G A MAP3K5 Nonsense_Mutation p.Q703* 0.32 TCGA-ER-A193-06 6 138197164 138197164 C T TNFAIP3 Silent p.S222S 0.24 TCGA-ER-A193-06 6 139165564 139165564 T C ECT2L Missense_Mutation p.V204A 0.16 tolerated(0.63) benign(0.001) TCGA-ER-A193-06 6 142399727 142399727 G A NMBR Missense_Mutation p.L246F 0.20 deleterious(0.02) possibly_damaging(0.719) TCGA-ER-A193-06 6 143074834 143074834 G A HIVEP2 Missense_Mutation p.P2251S 0.30 tolerated(0.64) benign(0.011) TCGA-ER-A193-06 6 143090907 143090907 G A HIVEP2 Missense_Mutation p.P1657S 0.40 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 6 144269295 144269295 C T PLAGL1 5'UTR 0.36 TCGA-ER-A193-06 6 146243875 146243875 C T SHPRH Missense_Mutation p.E1215K 0.22 deleterious(0.04) benign(0.342) TCGA-ER-A193-06 6 146266711 146266711 G A SHPRH Missense_Mutation p.L462F 0.28 tolerated_low_confidence(0.17) benign(0.012) TCGA-ER-A193-06 6 146625958 146625958 C T GRM1 Missense_Mutation p.P388S 0.16 tolerated(1) benign(0.017) TCGA-ER-A193-06 6 146625959 146625959 C T GRM1 Missense_Mutation p.P388L 0.16 tolerated(0.46) benign(0.012) TCGA-ER-A193-06 6 146625960 146625960 C T GRM1 Silent p.P388P 0.16 TCGA-ER-A193-06 6 146673564 146673564 C T GRM1 Silent p.I455I 0.41 TCGA-ER-A193-06 6 149720314 149720314 C T TAB2 Missense_Mutation p.P645S 0.29 tolerated(0.05) possibly_damaging(0.551) TCGA-ER-A193-06 6 149783087 149783087 A C ZC3H12D Missense_Mutation p.F109V 0.21 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 6 149795631 149795631 G A ZC3H12D Missense_Mutation p.R17W 0.32 deleterious(0) possibly_damaging(0.613) TCGA-ER-A193-06 6 150719329 150719329 G A IYD 3'UTR 0.35 TCGA-ER-A193-06 6 151121952 151121952 T C PLEKHG1 Missense_Mutation p.S243P 0.33 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 152646420 152646420 A G SYNE1 Silent p.V5152V 0.32 TCGA-ER-A193-06 6 154520941 154520941 C T IPCEF1 Silent p.K257K 0.24 TCGA-ER-A193-06 6 154567864 154567864 G A IPCEF1 Missense_Mutation p.S36L 0.43 deleterious(0) probably_damaging(0.986) TCGA-ER-A193-06 6 15468907 15468907 C A JARID2 Missense_Mutation p.P210T 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 15496631 15496631 C T JARID2 Missense_Mutation p.S392F 0.25 tolerated_low_confidence(0.16) possibly_damaging(0.668) TCGA-ER-A193-06 6 15511546 15511546 G A JARID2 Missense_Mutation p.E956K 0.30 deleterious(0.02) probably_damaging(0.967) TCGA-ER-A193-06 6 155764548 155764548 G A NOX3 Silent p.I115I 0.32 TCGA-ER-A193-06 6 158093791 158093791 C T ZDHHC14 Silent p.F368F 0.43 TCGA-ER-A193-06 6 159420903 159420903 G A RSPH3 Missense_Mutation p.P36S 0.20 tolerated_low_confidence(0.08) benign(0.003) TCGA-ER-A193-06 6 159461762 159461762 G A TAGAP Silent p.L194L 0.29 TCGA-ER-A193-06 6 160679660 160679660 C T SLC22A2 Missense_Mutation p.G44S 0.15 deleterious(0) possibly_damaging(0.858) TCGA-ER-A193-06 6 160679778 160679778 G A SLC22A2 Silent p.T4T 0.19 TCGA-ER-A193-06 6 160874634 160874634 G A SLC22A3 3'Flank 0.42 TCGA-ER-A193-06 6 160903763 160903763 T G LPAL2 RNA 0.32 TCGA-ER-A193-06 6 161016452 161016452 C T LPA Missense_Mutation p.E1135K 0.25 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-ER-A193-06 6 161152223 161152223 C T PLG Missense_Mutation p.P466L 0.32 tolerated(0.06) benign(0.013) TCGA-ER-A193-06 6 165715342 165715342 C T C6orf118 Missense_Mutation p.E157K 0.34 tolerated(0.41) benign(0.008) TCGA-ER-A193-06 6 165715547 165715547 C T C6orf118 Silent p.G88G 0.42 TCGA-ER-A193-06 6 165746463 165746463 G A PDE10A 3'UTR 0.37 TCGA-ER-A193-06 6 167550636 167550636 C T CCR6 Silent p.F306F 0.25 TCGA-ER-A193-06 6 167591907 167591907 G A TCP10L2 Silent p.G178G 0.21 TCGA-ER-A193-06 6 168431510 168431510 C A KIF25 Silent p.L50L 0.31 TCGA-ER-A193-06 6 168479606 168479606 G A FRMD1 Missense_Mutation p.L57F 0.36 tolerated(0.12) possibly_damaging(0.871) TCGA-ER-A193-06 6 170062419 170062419 G A WDR27 Missense_Mutation p.P336S 0.27 tolerated(0.53) benign(0.047) TCGA-ER-A193-06 6 1742745 1742745 C T GMDS Missense_Mutation p.E283K 0.34 deleterious_low_confidence(0.04) benign(0.181) TCGA-ER-A193-06 6 18132364 18132364 C T TPMT Missense_Mutation p.G209S 0.22 deleterious(0) possibly_damaging(0.839) TCGA-ER-A193-06 6 20490506 20490506 C T E2F3 Missense_Mutation p.P415S 0.34 tolerated(0.25) benign(0.023) TCGA-ER-A193-06 6 24146056 24146056 G A NRSN1 Missense_Mutation p.R157Q 0.19 deleterious(0.05) possibly_damaging(0.731) TCGA-ER-A193-06 6 24475374 24475374 T C GPLD1 Missense_Mutation p.Q139R 0.29 deleterious(0) probably_damaging(0.928) TCGA-ER-A193-06 6 24596353 24596353 C T KIAA0319 Silent p.T183T 0.29 TCGA-ER-A193-06 6 24786072 24786072 A G GMNN 3'UTR 0.24 TCGA-ER-A193-06 6 25917048 25917048 G A SLC17A2 Silent p.P265P 0.31 TCGA-ER-A193-06 6 26031889 26031889 C T HIST1H3B Missense_Mutation p.E134K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-ER-A193-06 6 26156975 26156975 G A HIST1H1E Silent p.K119K 0.29 TCGA-ER-A193-06 6 26271574 26271574 A C HIST1H3G Silent p.G13G 0.22 TCGA-ER-A193-06 6 26271575 26271575 C T HIST1H3G Missense_Mutation p.G13D 0.26 deleterious_low_confidence(0) benign(0.02) TCGA-ER-A193-06 6 2675297 2675297 G A MYLK4 Missense_Mutation p.S368F 0.32 tolerated(0.36) benign(0.001) TCGA-ER-A193-06 6 27805876 27805876 G A HIST1H2AK Missense_Mutation p.P81L 0.28 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-ER-A193-06 6 28333934 28333934 G A ZKSCAN3 Missense_Mutation p.E497K 0.31 tolerated(0.08) possibly_damaging(0.648) TCGA-ER-A193-06 6 28501754 28501754 C T GPX5 Missense_Mutation p.P159L 0.32 deleterious(0.02) benign(0.343) TCGA-ER-A193-06 6 28501755 28501755 C T GPX5 Silent p.P159P 0.33 TCGA-ER-A193-06 6 28888011 28888011 G A TRIM27 Silent p.T175T 0.24 TCGA-ER-A193-06 6 29012046 29012046 T A OR2W1 Nonsense_Mutation p.K303* 0.32 TCGA-ER-A193-06 6 29637982 29637982 G A MOG Intron 0.28 TCGA-ER-A193-06 6 30121774 30121774 C T TRIM10 Missense_Mutation p.R473Q 0.27 tolerated(0.28) probably_damaging(0.999) TCGA-ER-A193-06 6 30128443 30128443 G A TRIM10 Missense_Mutation p.R65C 0.26 deleterious(0.04) benign(0.01) TCGA-ER-A193-06 6 30521151 30521151 G A GNL1 Missense_Mutation p.R262C 0.32 tolerated(0.2) benign(0.002) TCGA-ER-A193-06 6 30638993 30638993 G A DHX16 Missense_Mutation p.A89V 0.32 tolerated(0.21) probably_damaging(0.935) TCGA-ER-A193-06 6 30671853 30671853 G A MDC1 Missense_Mutation p.P1703S 0.37 tolerated(0.09) benign(0.243) TCGA-ER-A193-06 6 30690766 30690766 C T TUBB Missense_Mutation p.P80S 0.29 deleterious_low_confidence(0.03) benign(0.028) TCGA-ER-A193-06 6 30698467 30698467 A G FLOT1 Missense_Mutation p.S315P 0.04 tolerated(0.05) benign(0.005) TCGA-ER-A193-06 6 30892164 30892164 C A VARS2 Missense_Mutation p.R864S 0.29 tolerated(0.53) benign(0.017) TCGA-ER-A193-06 6 31122525 31122525 G A CCHCR1 Silent p.I183I 0.44 TCGA-ER-A193-06 6 31599685 31599685 C T PRRC2A Missense_Mutation p.P1079S 0.38 unknown(0) TCGA-ER-A193-06 6 31895467 31895467 G A C2 5'UTR 0.31 TCGA-ER-A193-06 6 31896606 31896606 G A CFB Intron 0.30 TCGA-ER-A193-06 6 31911491 31911491 C T CFB Silent p.V393V 0.32 TCGA-ER-A193-06 6 32010368 32010368 G A TNXB Missense_Mutation p.P454L 0.27 deleterious(0) probably_damaging(0.991) TCGA-ER-A193-06 6 32037562 32037562 G A TNXB Silent p.T1785T 0.27 TCGA-ER-A193-06 6 32065010 32065010 C T TNXB Missense_Mutation p.G207D 0.35 probably_damaging(0.996) TCGA-ER-A193-06 6 32135730 32135730 A C EGFL8 Silent p.R293R 0.27 TCGA-ER-A193-06 6 32780969 32780969 G A HLA-DOB 3'UTR 0.29 TCGA-ER-A193-06 6 33246190 33246190 C T B3GALT4 Missense_Mutation p.H332Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 6 34496492 34496492 C T PACSIN1 Silent p.H98H 0.34 TCGA-ER-A193-06 6 348244 348244 C T DUSP22 Silent p.L135L 0.18 TCGA-ER-A193-06 6 35047422 35047422 C A ANKS1A Missense_Mutation p.L805I 0.22 tolerated(0.64) possibly_damaging(0.51) TCGA-ER-A193-06 6 35089948 35089948 C T TCP11 Missense_Mutation p.R188Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A193-06 6 35943165 35943165 C T SLC26A8 Missense_Mutation p.G425E 0.27 deleterious(0) probably_damaging(0.977) TCGA-ER-A193-06 6 36274124 36274124 G A PNPLA1 Silent p.V480V 0.30 TCGA-ER-A193-06 6 36714238 36714238 A G CPNE5 Missense_Mutation p.F379L 0.29 deleterious(0.02) possibly_damaging(0.869) TCGA-ER-A193-06 6 37426561 37426561 C T CMTR1 Silent p.S317S 0.35 TCGA-ER-A193-06 6 38029534 38029534 C T ZFAND3 Missense_Mutation p.S93L 0.47 tolerated(0.14) benign(0.004) TCGA-ER-A193-06 6 38877410 38877410 C T DNAH8 Silent p.F2993F 0.29 TCGA-ER-A193-06 6 38980349 38980349 T A DNAH8 Missense_Mutation p.F4333L 0.30 benign(0.246) TCGA-ER-A193-06 6 40400441 40400441 C T LRFN2 Missense_Mutation p.G138S 0.24 tolerated(0.59) benign(0.004) TCGA-ER-A193-06 6 4069555 4069555 A C FAM217A Missense_Mutation p.I301S 0.30 deleterious(0) probably_damaging(0.964) TCGA-ER-A193-06 6 41533480 41533480 C T FOXP4 Intron 0.28 TCGA-ER-A193-06 6 42890984 42890984 C T PTCRA Missense_Mutation p.S93F 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 43267701 43267701 G A SLC22A7 Missense_Mutation p.G242R 0.24 tolerated(0.15) benign(0.119) TCGA-ER-A193-06 6 44102468 44102468 C T TMEM63B Silent p.F49F 0.27 TCGA-ER-A193-06 6 44144036 44144036 C T CAPN11 Missense_Mutation p.P321L 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 6 44144037 44144037 C T CAPN11 Silent p.P321P 0.25 TCGA-ER-A193-06 6 44249942 44249942 C T TCTE1 Missense_Mutation p.E401K 0.27 tolerated(0.2) benign(0.01) TCGA-ER-A193-06 6 44328265 44328265 G A SPATS1 Missense_Mutation p.D124N 0.27 tolerated(0.5) benign(0.004) TCGA-ER-A193-06 6 46604199 46604199 T G CYP39A1 Missense_Mutation p.K220T 0.48 tolerated(0.28) benign(0.034) TCGA-ER-A193-06 6 46604200 46604200 T A CYP39A1 Nonsense_Mutation p.K220* 0.48 TCGA-ER-A193-06 6 46677145 46677145 T A PLA2G7 Missense_Mutation p.D263V 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 46801146 46801146 G A MEP1A Missense_Mutation p.D494N 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 6 46806801 46806801 C T MEP1A Silent p.I723I 0.26 TCGA-ER-A193-06 6 46847732 46847732 C T GPR116 Missense_Mutation p.D287N 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 6 46988502 46988502 A G GPR110 Silent p.I192I 0.35 TCGA-ER-A193-06 6 47646750 47646750 C T GPR111 Silent p.S117S 0.38 TCGA-ER-A193-06 6 47684583 47684583 G A GPR115 Silent p.K658K 0.34 TCGA-ER-A193-06 6 49703226 49703226 G A CRISP3 Nonsense_Mutation p.R113* 0.20 TCGA-ER-A193-06 6 49754071 49754071 C G PGK2 Missense_Mutation p.G277A 0.31 deleterious(0.01) benign(0.092) TCGA-ER-A193-06 6 51918901 51918901 G A PKHD1 Silent p.I633I 0.32 TCGA-ER-A193-06 6 51927330 51927330 C T PKHD1 Missense_Mutation p.G369R 0.29 tolerated(0.28) benign(0.167) TCGA-ER-A193-06 6 53010427 53010427 C T GCM1 Missense_Mutation p.E2K 0.32 tolerated(0.05) benign(0.028) TCGA-ER-A193-06 6 54173538 54173538 G A TINAG Missense_Mutation p.E64K 0.28 tolerated(0.61) benign(0.009) TCGA-ER-A193-06 6 54212204 54212204 G A TINAG Missense_Mutation p.R263Q 0.36 tolerated(0.38) benign(0.017) TCGA-ER-A193-06 6 54805149 54805149 T A FAM83B Missense_Mutation p.N460K 0.37 deleterious(0.02) probably_damaging(0.974) TCGA-ER-A193-06 6 55620318 55620318 A G BMP5 3'UTR 0.29 TCGA-ER-A193-06 6 56035891 56035891 G A COL21A1 Missense_Mutation p.R226C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.28 deleterious(0.02) benign(0.201) TCGA-ER-A193-06 6 56479171 56479171 G A DST Missense_Mutation p.P1144S 0.20 benign(0.001) TCGA-ER-A193-06 6 57012021 57012021 C T ZNF451 Missense_Mutation p.H380Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-ER-A193-06 6 62604687 62604687 G A KHDRBS2 Silent p.L221L 0.35 TCGA-ER-A193-06 6 64394787 64394787 G A PHF3 Silent p.E388E 0.25 TCGA-ER-A193-06 6 70064192 70064192 C T BAI3 Missense_Mutation p.S1176L 0.28 deleterious(0) benign(0.041) TCGA-ER-A193-06 6 7211090 7211090 C T RREB1 Missense_Mutation p.P160L 0.33 deleterious(0.02) benign(0.105) TCGA-ER-A193-06 6 73110358 73110358 G A RIMS1 Missense_Mutation p.R1674Q 0.36 deleterious(0) probably_damaging(0.97) TCGA-ER-A193-06 6 73879567 73879567 C T KCNQ5 Nonsense_Mutation p.R542* 0.34 TCGA-ER-A193-06 6 73904929 73904929 G A KCNQ5 Nonsense_Mutation p.W883* 0.32 TCGA-ER-A193-06 6 74073507 74073507 G A KHDC3L Missense_Mutation p.R193Q 0.36 tolerated(0.51) benign(0.218) TCGA-ER-A193-06 6 74155401 74155401 A T MB21D1 Missense_Mutation p.S243T 0.30 tolerated(0.41) benign(0.044) TCGA-ER-A193-06 6 7568089 7568089 G A DSP Missense_Mutation p.D406N 0.29 probably_damaging(0.968) TCGA-ER-A193-06 6 7586062 7586062 C G DSP Missense_Mutation p.S2856C 0.25 possibly_damaging(0.887) TCGA-ER-A193-06 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.28 TCGA-ER-A193-06 6 7845444 7845444 C T BMP6 Missense_Mutation p.P246S 0.29 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 6 80223162 80223162 G A LCA5 Missense_Mutation p.R163C 0.30 deleterious(0.02) benign(0.277) TCGA-ER-A193-06 6 80635945 80635945 C T ELOVL4 Missense_Mutation p.G85E 0.30 deleterious(0.01) benign(0.374) TCGA-ER-A193-06 6 84317473 84317473 C T SNAP91 Missense_Mutation p.D323N 0.50 tolerated(0.74) unknown(0) TCGA-ER-A193-06 6 84765066 84765066 G A MRAP2 Missense_Mutation p.R10K 0.32 tolerated(0.15) benign(0.005) TCGA-ER-A193-06 6 84895009 84895009 G A KIAA1009 Missense_Mutation p.S520L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A193-06 6 88854756 88854756 C T CNR1 Missense_Mutation p.E80K 0.42 deleterious_low_confidence(0.03) benign(0.021) TCGA-ER-A193-06 6 90604323 90604323 G A GJA10 Missense_Mutation p.D46N 0.33 tolerated(0.32) benign(0.17) TCGA-ER-A193-06 6 90642519 90642519 C T BACH2 Missense_Mutation p.E712K 0.34 deleterious(0.01) possibly_damaging(0.459) TCGA-ER-A193-06 6 91257074 91257074 G A MAP3K7 Silent p.S371S 0.28 TCGA-ER-A193-06 6 94066578 94066578 C T EPHA7 Missense_Mutation p.G394E 0.29 deleterious(0.01) probably_damaging(1) TCGA-ER-A193-06 6 97247715 97247715 G A GPR63 5'UTR 0.54 TCGA-ER-A193-06 7 100001349 100001349 C T ZCWPW1 Missense_Mutation p.E460K 0.16 tolerated(0.38) benign(0.079) TCGA-ER-A193-06 7 100087196 100087196 G A NYAP1 Missense_Mutation p.E618K 0.71 tolerated(0.12) benign(0.087) TCGA-ER-A193-06 7 100373429 100373429 G A ZAN Missense_Mutation p.E2055K 0.65 unknown(0) TCGA-ER-A193-06 7 100551597 100551597 C T MUC3A Silent p.I116I 0.09 TCGA-ER-A193-06 7 100675865 100675865 G A MUC17 Missense_Mutation p.E390K 0.44 possibly_damaging(0.685) TCGA-ER-A193-06 7 100686068 100686068 G A MUC17 Missense_Mutation p.G3791S 0.72 benign(0) TCGA-ER-A193-06 7 101844696 101844696 C T CUX1 Missense_Mutation p.R718C 0.76 deleterious(0) unknown(0) TCGA-ER-A193-06 7 101845438 101845438 A G CUX1 Missense_Mutation p.E965G 0.67 deleterious(0) unknown(0) TCGA-ER-A193-06 7 101882719 101882719 C T CUX1 Missense_Mutation p.R1259W 0.65 deleterious(0) unknown(0) TCGA-ER-A193-06 7 103126644 103126644 C T RELN Missense_Mutation p.S3328N 0.76 tolerated(0.12) possibly_damaging(0.507) TCGA-ER-A193-06 7 103236992 103236992 C T RELN Silent p.E1150E 0.74 TCGA-ER-A193-06 7 103322673 103322673 G A RELN Silent p.F393F 0.43 TCGA-ER-A193-06 7 107603371 107603371 G A LAMB1 Silent p.I612I 0.73 TCGA-ER-A193-06 7 11142173 11142173 C T PHF14 3'UTR 0.28 TCGA-ER-A193-06 7 111509675 111509675 C T DOCK4 Silent p.R688R 0.70 TCGA-ER-A193-06 7 113520099 113520099 G A PPP1R3A Missense_Mutation p.P350S 0.48 tolerated(0.14) benign(0.027) TCGA-ER-A193-06 7 117171169 117171169 G A CFTR Splice_Site p.X163_splice 0.86 TCGA-ER-A193-06 7 117292956 117292956 G A CFTR Missense_Mutation p.D1312N 0.69 deleterious(0) possibly_damaging(0.751) TCGA-ER-A193-06 7 120446602 120446602 C T TSPAN12 Splice_Site p.X204_splice 0.77 TCGA-ER-A193-06 7 120935629 120935629 C T CPED1 Missense_Mutation p.H1002Y 0.72 deleterious(0) possibly_damaging(0.808) TCGA-ER-A193-06 7 120935800 120935800 G A CPED1 3'UTR 0.75 TCGA-ER-A193-06 7 121960387 121960387 G A CADPS2 Silent p.T1241T 0.70 TCGA-ER-A193-06 7 122635250 122635250 C T TAS2R16 Missense_Mutation p.G147R 0.21 tolerated(0.79) benign(0.007) TCGA-ER-A193-06 7 122635487 122635487 A C TAS2R16 Missense_Mutation p.F68V 0.20 deleterious(0) benign(0.359) TCGA-ER-A193-06 7 123594569 123594569 C T SPAM1 Silent p.F315F 0.69 TCGA-ER-A193-06 7 128483492 128483492 C T FLNC Missense_Mutation p.T891M 0.21 deleterious(0) probably_damaging(0.938) TCGA-ER-A193-06 7 129668810 129668810 G A ZC3HC1 Missense_Mutation p.R185C 0.79 deleterious(0) probably_damaging(0.988) TCGA-ER-A193-06 7 132192929 132192929 G A PLXNA4 Missense_Mutation p.S175F 0.25 deleterious(0.04) probably_damaging(0.914) TCGA-ER-A193-06 7 134925449 134925449 C T STRA8 Missense_Mutation p.S80F 0.65 deleterious(0.02) probably_damaging(0.966) TCGA-ER-A193-06 7 135289098 135289098 C T NUP205 Missense_Mutation p.H905Y 0.60 tolerated(0.61) benign(0.241) TCGA-ER-A193-06 7 140156415 140156415 A T MKRN1 Intron 0.14 TCGA-ER-A193-06 7 140453136 140453136 A C BRAF Missense_Mutation p.V600G 0.71 deleterious(0) possibly_damaging(0.497) TCGA-ER-A193-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.71 deleterious(0) possibly_damaging(0.838) TCGA-ER-A193-06 7 141752740 141752740 C T MGAM Missense_Mutation p.R1039C 0.78 deleterious(0) possibly_damaging(0.448) TCGA-ER-A193-06 7 141755373 141755373 C T MGAM Silent p.L1110L 0.72 TCGA-ER-A193-06 7 141770800 141770800 G A MGAM Intron 0.42 TCGA-ER-A193-06 7 141952147 141952147 C T PRSS58 Missense_Mutation p.G207E 0.60 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 7 142001050 142001050 C T TRBV2 Missense_Mutation p.H15Y 0.53 TCGA-ER-A193-06 7 142247329 142247329 C T TRBV7-3 Missense_Mutation p.D43N 0.11 TCGA-ER-A193-06 7 142609899 142609899 G A TRPV5 Nonsense_Mutation p.Q513* 0.41 TCGA-ER-A193-06 7 142919715 142919715 G A TAS2R40 Missense_Mutation p.E182K 0.51 tolerated(0.53) benign(0.05) TCGA-ER-A193-06 7 143421817 143421817 G A FAM115C Silent p.R844R 0.52 TCGA-ER-A193-06 7 143826740 143826740 G A OR2A14 Missense_Mutation p.E179K 0.49 deleterious(0) possibly_damaging(0.851) TCGA-ER-A193-06 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.21 tolerated(1) benign(0.006) TCGA-ER-A193-06 7 149559258 149559258 C T ZNF862 Silent p.L1003L 0.66 TCGA-ER-A193-06 7 150174541 150174541 G A GIMAP8 Silent p.T557T 0.74 TCGA-ER-A193-06 7 150690932 150690932 C T NOS3 Missense_Mutation p.P14L 0.73 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-ER-A193-06 7 150846056 150846056 C T GBX1 Missense_Mutation p.G238R 0.20 tolerated(0.09) possibly_damaging(0.694) TCGA-ER-A193-06 7 151065825 151065825 G A NUB1 Missense_Mutation p.R391H 0.72 tolerated(0.14) benign(0.008) TCGA-ER-A193-06 7 151262925 151262925 T C PRKAG2 Missense_Mutation p.E427G 0.10 deleterious(0.01) benign(0.313) TCGA-ER-A193-06 7 18633644 18633644 G A HDAC9 Missense_Mutation p.R219Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 7 20197884 20197884 T G MACC1 Missense_Mutation p.L700F 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 7 20685612 20685612 G A ABCB5 Missense_Mutation p.D278N 0.28 tolerated(0.45) benign(0.012) TCGA-ER-A193-06 7 23854809 23854809 C T STK31 Missense_Mutation p.P936L 0.28 deleterious(0) possibly_damaging(0.908) TCGA-ER-A193-06 7 24329192 24329192 G A NPY Missense_Mutation p.R88K 0.23 tolerated(0.18) benign(0.003) TCGA-ER-A193-06 7 2472524 2472524 C T CHST12 Missense_Mutation p.P84S 0.34 tolerated(0.85) benign(0.001) TCGA-ER-A193-06 7 26236498 26236498 C T HNRNPA2B1 Missense_Mutation p.R147K 0.27 tolerated(0.2) unknown(0) TCGA-ER-A193-06 7 29963649 29963649 G A SCRN1 Missense_Mutation p.S410F 0.33 tolerated(0.11) benign(0.003) TCGA-ER-A193-06 7 31617906 31617906 C G CCDC129 Missense_Mutation p.P369R 0.16 tolerated(0.08) possibly_damaging(0.584) TCGA-ER-A193-06 7 31617952 31617952 G A CCDC129 Silent p.K384K 0.19 TCGA-ER-A193-06 7 34091495 34091495 C T BMPER Silent p.L233L 0.32 TCGA-ER-A193-06 7 37936528 37936528 G A NME8 Missense_Mutation p.R534Q 0.28 tolerated(0.29) benign(0.067) TCGA-ER-A193-06 7 39247156 39247156 C T POU6F2 Nonsense_Mutation p.Q150* 0.29 TCGA-ER-A193-06 7 43483832 43483832 C T HECW1 Missense_Mutation p.S354F 0.30 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-ER-A193-06 7 43485112 43485112 G A HECW1 Missense_Mutation p.E781K 0.15 tolerated_low_confidence(0.85) benign(0.007) TCGA-ER-A193-06 7 43580787 43580787 G A HECW1 Missense_Mutation p.G1349S 0.35 deleterious(0.03) possibly_damaging(0.872) TCGA-ER-A193-06 7 44179459 44179459 C T MYL7 Missense_Mutation p.G100E 0.27 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 7 45222933 45222933 C T RAMP3 Silent p.I123I 0.31 TCGA-ER-A193-06 7 45930193 45930193 G A IGFBP1 Silent p.E132E 0.38 TCGA-ER-A193-06 7 47454705 47454705 G A TNS3 Silent p.F191F 0.45 TCGA-ER-A193-06 7 47884669 47884669 G A PKD1L1 Missense_Mutation p.R1721C 0.25 deleterious(0) possibly_damaging(0.855) TCGA-ER-A193-06 7 47917121 47917121 G A PKD1L1 Missense_Mutation p.T1210I 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 7 47969116 47969116 C T PKD1L1 Missense_Mutation p.G249S 0.18 tolerated(0.26) benign(0.001) TCGA-ER-A193-06 7 49977143 49977143 C T ZPBP Missense_Mutation p.G346E 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 7 49977183 49977183 C T ZPBP Missense_Mutation p.G333R 0.25 tolerated(0.09) probably_damaging(0.993) TCGA-ER-A193-06 7 50450384 50450384 G A IKZF1 Missense_Mutation p.G190S 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 7 50605573 50605573 C T DDC Silent p.G140G 0.25 TCGA-ER-A193-06 7 53103793 53103793 C T POM121L12 Silent p.P143P 0.34 TCGA-ER-A193-06 7 54612430 54612430 C T VSTM2A Silent p.F65F 0.26 TCGA-ER-A193-06 7 57200000 57200000 C T ZNF479 Missense_Mutation p.R11Q 0.25 tolerated_low_confidence(0.5) benign(0.273) TCGA-ER-A193-06 7 5769131 5769131 C T RNF216 Missense_Mutation p.V441M 0.30 tolerated(1) benign(0.003) TCGA-ER-A193-06 7 5968013 5968013 C T RSPH10B Missense_Mutation p.R749K 0.16 tolerated(1) benign(0) TCGA-ER-A193-06 7 62752678 62752678 G A ZNF733P RNA 0.19 TCGA-ER-A193-06 7 65150682 65150682 G A INTS4L2 RNA 0.44 TCGA-ER-A193-06 7 65556996 65556996 C T ASL Missense_Mutation p.H356Y 0.34 tolerated(0.15) benign(0.004) TCGA-ER-A193-06 7 65842553 65842553 C T LINC00174 RNA 0.21 TCGA-ER-A193-06 7 82578962 82578962 G A PCLO Missense_Mutation p.P3648S 0.59 unknown(0) TCGA-ER-A193-06 7 82579685 82579685 C T PCLO Missense_Mutation p.E3407K 0.61 unknown(0) TCGA-ER-A193-06 7 83047717 83047717 G A SEMA3E Missense_Mutation p.S180F 0.70 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 7 86415780 86415780 G A GRM3 Silent p.E224E 0.65 TCGA-ER-A193-06 7 87170762 87170762 C T ABCB1 Missense_Mutation p.D744N 0.52 tolerated(0.08) benign(0.005) TCGA-ER-A193-06 7 88962863 88962863 C T ZNF804B Silent p.H189H 0.27 TCGA-ER-A193-06 7 92764688 92764688 G A SAMD9L Silent p.F199F 0.43 TCGA-ER-A193-06 7 92765204 92765204 A G SAMD9L Silent p.L27L 0.71 TCGA-ER-A193-06 7 97482446 97482446 C T ASNS Missense_Mutation p.E468K 0.45 deleterious(0) possibly_damaging(0.45) TCGA-ER-A193-06 7 98457957 98457957 G A TMEM130 Silent p.F132F 0.25 TCGA-ER-A193-06 7 98565207 98565207 C T TRRAP Silent p.F2459F 0.68 TCGA-ER-A193-06 7 99708829 99708829 T C TAF6 Missense_Mutation p.Q376R 0.72 deleterious(0.03) possibly_damaging(0.828) TCGA-ER-A193-06 7 99798111 99798111 C T STAG3 Silent p.L602L 0.70 TCGA-ER-A193-06 7 99798112 99798112 C T STAG3 Nonsense_Mutation p.Q603* 0.68 TCGA-ER-A193-06 7 99802737 99802737 C T STAG3 Missense_Mutation p.H1021Y 0.71 deleterious(0.01) possibly_damaging(0.506) TCGA-ER-A193-06 8 100904221 100904221 C T COX6C Missense_Mutation p.R10Q 0.29 tolerated(1) benign(0) TCGA-ER-A193-06 8 101075756 101075756 C T RGS22 Missense_Mutation p.E414K 0.24 tolerated(0.09) possibly_damaging(0.735) TCGA-ER-A193-06 8 101586021 101586021 C T SNX31 3'UTR 0.41 TCGA-ER-A193-06 8 102504884 102504884 C T GRHL2 5'UTR 0.22 TCGA-ER-A193-06 8 103372302 103372302 A G UBR5 Missense_Mutation p.L128S 0.24 tolerated(0.14) probably_damaging(0.942) TCGA-ER-A193-06 8 104427557 104427557 C T DCAF13 Silent p.S113S 0.29 TCGA-ER-A193-06 8 10465331 10465331 C T RP1L1 Missense_Mutation p.E2093K 0.30 unknown(0) TCGA-ER-A193-06 8 10480260 10480260 G A RP1L1 Missense_Mutation p.P151L 0.32 possibly_damaging(0.504) TCGA-ER-A193-06 8 105405031 105405031 C T DPYS Missense_Mutation p.R475Q 0.35 deleterious(0.03) probably_damaging(0.99) TCGA-ER-A193-06 8 10583900 10583900 G A SOX7 Missense_Mutation p.P224L 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.38 tolerated(0.1) probably_damaging(0.996) TCGA-ER-A193-06 8 106814320 106814320 G A ZFPM2 Silent p.V670V 0.33 TCGA-ER-A193-06 8 10755744 10755744 C T XKR6 Silent p.T548T 0.19 TCGA-ER-A193-06 8 107773536 107773536 C T ABRA Missense_Mutation p.G292E 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 8 110464385 110464385 C T PKHD1L1 Missense_Mutation p.A2128V 0.22 deleterious(0.01) benign(0.371) TCGA-ER-A193-06 8 110478830 110478830 C T PKHD1L1 Missense_Mutation p.P2813S 0.20 deleterious(0.01) benign(0.251) TCGA-ER-A193-06 8 110520326 110520326 G A PKHD1L1 Missense_Mutation p.G3743E 0.19 deleterious(0) probably_damaging(0.993) TCGA-ER-A193-06 8 113246664 113246664 T G CSMD3 Missense_Mutation p.Y3557S 0.31 deleterious(0.01) benign(0.07) TCGA-ER-A193-06 8 113299325 113299325 C T CSMD3 Missense_Mutation p.G3100D 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-ER-A193-06 8 113871469 113871469 C G CSMD3 Missense_Mutation p.G554R 0.27 deleterious(0) possibly_damaging(0.905) TCGA-ER-A193-06 8 114031403 114031403 G A CSMD3 Missense_Mutation p.S308F 0.35 deleterious(0) probably_damaging(0.936) TCGA-ER-A193-06 8 116599255 116599255 G A TRPS1 Silent p.S891S 0.29 TCGA-ER-A193-06 8 11996035 11996035 C T USP17L2 Missense_Mutation p.G79R 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 8 124033698 124033698 G A DERL1 Silent p.I165I 0.29 TCGA-ER-A193-06 8 124267897 124267897 A C ZHX1 Missense_Mutation p.V97G 0.24 deleterious(0) probably_damaging(0.987) TCGA-ER-A193-06 8 124408489 124408489 T G ATAD2 Silent p.R37R 0.40 TCGA-ER-A193-06 8 124797890 124797890 C T FAM91A1 Nonsense_Mutation p.R291* 0.28 TCGA-ER-A193-06 8 125061927 125061927 T A FER1L6 Nonsense_Mutation p.L935* 0.35 TCGA-ER-A193-06 8 125103708 125103708 T A FER1L6 Missense_Mutation p.I1479N 0.33 deleterious(0) possibly_damaging(0.886) TCGA-ER-A193-06 8 126017848 126017848 C T SQLE Missense_Mutation p.P209L 0.35 deleterious(0.03) possibly_damaging(0.461) TCGA-ER-A193-06 8 126044520 126044520 C T KIAA0196 Missense_Mutation p.G1100S 0.27 tolerated(0.56) benign(0.364) TCGA-ER-A193-06 8 131880139 131880139 G A ADCY8 Silent p.I721I 0.31 TCGA-ER-A193-06 8 132991232 132991232 C T EFR3A Missense_Mutation p.R489C 0.27 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 8 136569778 136569778 C T KHDRBS3 Nonsense_Mutation p.R187* 0.34 TCGA-ER-A193-06 8 140630620 140630620 C T KCNK9 Missense_Mutation p.E336K 0.39 tolerated(0.15) benign(0.317) TCGA-ER-A193-06 8 141461084 141461084 G A TRAPPC9 Missense_Mutation p.T228I 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-ER-A193-06 8 142204213 142204213 G A DENND3 Missense_Mutation p.E1160K 0.27 tolerated(0.09) possibly_damaging(0.579) TCGA-ER-A193-06 8 142231803 142231803 G A SLC45A4 Silent p.F50F 0.39 TCGA-ER-A193-06 8 142367016 142367016 G A GPR20 Silent p.G336G 0.38 TCGA-ER-A193-06 8 143425434 143425434 G A TSNARE1 Missense_Mutation p.S213F 0.26 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-ER-A193-06 8 144331949 144331949 G T ZFP41 5'UTR 0.60 TCGA-ER-A193-06 8 144773287 144773287 G A ZNF707 Silent p.E20E 0.13 TCGA-ER-A193-06 8 144942583 144942583 G A EPPK1 Silent p.F1613F 0.16 TCGA-ER-A193-06 8 144994643 144994643 G A PLEC Silent p.L3253L 0.38 TCGA-ER-A193-06 8 144996939 144996939 C T PLEC Silent p.K2523K 0.18 TCGA-ER-A193-06 8 145697783 145697783 G A KIFC2 Silent p.V549V 0.28 TCGA-ER-A193-06 8 145948186 145948186 G A ZNF251 Missense_Mutation p.H287Y 0.26 deleterious(0) benign(0.365) TCGA-ER-A193-06 8 17188763 17188763 C T MTMR7 Missense_Mutation p.G254E 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 8 17819629 17819629 C T PCM1 Silent p.T803T 0.12 TCGA-ER-A193-06 8 18257721 18257721 C T NAT2 Nonsense_Mutation p.Q70* 0.26 TCGA-ER-A193-06 8 20028949 20028949 G A SLC18A1 Missense_Mutation p.L261F 0.17 deleterious(0.02) probably_damaging(1) TCGA-ER-A193-06 8 21767128 21767128 C A DOK2 Silent p.G311G 0.36 TCGA-ER-A193-06 8 22065004 22065004 G A BMP1 Silent p.K850K 0.25 TCGA-ER-A193-06 8 22938908 22938908 G A RP11-875O11.2 RNA 0.25 TCGA-ER-A193-06 8 23186040 23186040 C T LOXL2 Silent p.G335G 0.22 TCGA-ER-A193-06 8 24178949 24178949 T G ADAM28 Intron 0.38 TCGA-ER-A193-06 8 24193082 24193082 C T ADAM28 Missense_Mutation p.H499Y 0.33 tolerated(0.3) benign(0.002) TCGA-ER-A193-06 8 24199265 24199265 A T ADAM28 Missense_Mutation p.N609Y 0.41 deleterious(0.01) benign(0.169) TCGA-ER-A193-06 8 24200644 24200644 G A ADAM28 Missense_Mutation p.E621K 0.31 deleterious(0.02) possibly_damaging(0.637) TCGA-ER-A193-06 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.22 TCGA-ER-A193-06 8 26623490 26623490 G A ADRA1A Intron 0.43 TCGA-ER-A193-06 8 27101227 27101227 C T STMN4 Splice_Site p.X5_splice 0.23 TCGA-ER-A193-06 8 27278190 27278190 C T PTK2B Missense_Mutation p.R134C 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 8 27288624 27288624 C T PTK2B Intron 0.28 TCGA-ER-A193-06 8 27917999 27917999 C T NUGGC Silent p.R347R 0.26 TCGA-ER-A193-06 8 28574084 28574084 C T EXTL3 Missense_Mutation p.P170S 0.32 tolerated(0.49) benign(0.004) TCGA-ER-A193-06 8 28575536 28575536 C T EXTL3 Missense_Mutation p.L654F 0.43 deleterious(0) probably_damaging(0.984) TCGA-ER-A193-06 8 30209946 30209946 G A TUBBP1 RNA 0.36 TCGA-ER-A193-06 8 30210670 30210670 G A TUBBP1 RNA 0.21 TCGA-ER-A193-06 8 30701385 30701385 G A TEX15 Nonsense_Mutation p.R1717* 0.34 TCGA-ER-A193-06 8 30706624 30706624 T C TEX15 5'Flank 0.32 TCGA-ER-A193-06 8 3443732 3443732 C T CSMD1 Missense_Mutation p.G383E 0.20 probably_damaging(1) TCGA-ER-A193-06 8 35631906 35631906 C T UNC5D Silent p.S856S 0.33 TCGA-ER-A193-06 8 38067760 38067760 A G BAG4 Missense_Mutation p.S375G 0.26 tolerated(1) benign(0.002) TCGA-ER-A193-06 8 39112000 39112000 C T ADAM32 Missense_Mutation p.S657F 0.40 deleterious(0) possibly_damaging(0.605) TCGA-ER-A193-06 8 39495093 39495093 C T ADAM18 Missense_Mutation p.S233F 0.35 deleterious(0) probably_damaging(0.992) TCGA-ER-A193-06 8 41522550 41522550 C T ANK1 Intron 0.32 TCGA-ER-A193-06 8 41566302 41566302 C T ANK1 Silent p.G697G 0.30 TCGA-ER-A193-06 8 41832276 41832276 G A KAT6A Silent p.I476I 0.27 TCGA-ER-A193-06 8 48885587 48885587 C T MCM4 Missense_Mutation p.P700L 0.17 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 8 52321488 52321488 A T PXDNL Missense_Mutation p.V899D 0.25 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 8 52321489 52321489 C T PXDNL Missense_Mutation p.V899I 0.24 tolerated(0.13) possibly_damaging(0.548) TCGA-ER-A193-06 8 53030941 53030941 G A ST18 Missense_Mutation p.S939F 0.19 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 8 54141918 54141918 C T OPRK1 Missense_Mutation p.R361Q 0.28 tolerated(0.06) benign(0.003) TCGA-ER-A193-06 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.32 tolerated(0.85) benign(0.006) TCGA-ER-A193-06 8 57354068 57354068 G A PENK Silent p.F189F 0.36 TCGA-ER-A193-06 8 62412056 62412056 G A CLVS1 Silent p.E340E 0.23 TCGA-ER-A193-06 8 6303125 6303125 C T MCPH1 Intron 0.40 TCGA-ER-A193-06 8 6682705 6682705 A G XKR5 RNA 0.31 TCGA-ER-A193-06 8 6682706 6682706 G A XKR5 RNA 0.31 TCGA-ER-A193-06 8 66989093 66989093 G A DNAJC5B Silent p.S106S 0.34 TCGA-ER-A193-06 8 69381046 69381046 C T C8orf34 Missense_Mutation p.L243F 0.11 deleterious(0.03) probably_damaging(1) TCGA-ER-A193-06 8 70585331 70585331 C T SLCO5A1 Missense_Mutation p.E774K 0.35 tolerated(0.48) benign(0.028) TCGA-ER-A193-06 8 70744059 70744059 G A SLCO5A1 Silent p.L284L 0.26 TCGA-ER-A193-06 8 70981499 70981499 C T PRDM14 Silent p.E199E 0.28 TCGA-ER-A193-06 8 72127689 72127689 C T EYA1 Silent p.A510A 0.34 TCGA-ER-A193-06 8 73479983 73479983 C T KCNB2 Missense_Mutation p.A5V 0.25 tolerated_low_confidence(0.31) benign(0.003) TCGA-ER-A193-06 8 73849114 73849114 C T KCNB2 Silent p.F508F 0.22 TCGA-ER-A193-06 8 74917030 74917030 G A LY96 Splice_Site p.X38_splice 0.22 TCGA-ER-A193-06 8 77765850 77765850 G A ZFHX4 Silent p.T2231T 0.38 TCGA-ER-A193-06 8 77767304 77767304 C T ZFHX4 Missense_Mutation p.S2716F 0.31 possibly_damaging(0.502) TCGA-ER-A193-06 8 77767855 77767855 G A ZFHX4 Missense_Mutation p.E2900K 0.21 probably_damaging(0.98) TCGA-ER-A193-06 8 8235327 8235327 G A SGK223 Nonsense_Mutation p.Q198* 0.30 TCGA-ER-A193-06 8 86352060 86352060 G A CA3 Missense_Mutation p.D52N 0.26 tolerated(0.17) probably_damaging(0.998) TCGA-ER-A193-06 8 8998385 8998385 G A PPP1R3B Silent p.F259F 0.33 TCGA-ER-A193-06 8 92346639 92346639 G T SLC26A7 Missense_Mutation p.R253S 0.15 tolerated(0.6) benign(0.009) TCGA-ER-A193-06 8 92983071 92983071 C G RUNX1T1 Missense_Mutation p.A463P 0.22 deleterious(0.01) benign(0.111) TCGA-ER-A193-06 8 95550487 95550487 C T KIAA1429 Splice_Site p.X89_splice 0.25 TCGA-ER-A193-06 9 102744907 102744907 C T ERP44 Missense_Mutation p.R403Q 0.39 deleterious(0.01) benign(0.133) TCGA-ER-A193-06 9 107457290 107457290 G A OR13D1 Missense_Mutation p.M196I 0.44 tolerated(0.23) benign(0.034) TCGA-ER-A193-06 9 107618170 107618170 G A ABCA1 Intron 0.45 TCGA-ER-A193-06 9 113173591 113173591 G C SVEP1 Missense_Mutation p.P2134A 0.34 probably_damaging(1) TCGA-ER-A193-06 9 113562887 113562887 C G MUSK Missense_Mutation p.D743E 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 9 114151901 114151901 G A KIAA0368 Missense_Mutation p.P1306S 0.47 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 9 114462261 114462261 C T C9orf84 Silent p.G988G 0.33 TCGA-ER-A193-06 9 117849554 117849554 T C TNC Splice_Site p.X153_splice 0.46 TCGA-ER-A193-06 9 118997908 118997908 C T PAPPA Silent p.F908F 0.34 TCGA-ER-A193-06 9 121971022 121971022 G A BRINP1 Missense_Mutation p.P374S 0.44 deleterious(0.01) probably_damaging(0.968) TCGA-ER-A193-06 9 121976080 121976080 G A BRINP1 Intron 0.41 TCGA-ER-A193-06 9 125084878 125084878 C T MRRF Silent p.T257T 0.43 TCGA-ER-A193-06 9 125144005 125144005 G A PTGS1 Silent p.K247K 0.56 TCGA-ER-A193-06 9 125239481 125239481 C T OR1J1 Missense_Mutation p.G242E 0.64 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A193-06 9 125273643 125273643 C T OR1J2 Missense_Mutation p.S188F 0.41 deleterious_low_confidence(0) benign(0.333) TCGA-ER-A193-06 9 130513528 130513528 C T SH2D3C Missense_Mutation p.E203K 0.40 deleterious(0.02) possibly_damaging(0.861) TCGA-ER-A193-06 9 135156886 135156886 G A SETX Missense_Mutation p.P2208S 0.50 deleterious(0) probably_damaging(0.996) TCGA-ER-A193-06 9 140100180 140100180 G A NDOR1 5'UTR 0.54 TCGA-ER-A193-06 9 16552546 16552546 G A BNC2 Silent p.V217V 0.50 TCGA-ER-A193-06 9 18721637 18721637 C T ADAMTSL1 Silent p.S660S 0.43 TCGA-ER-A193-06 9 18928172 18928172 C T FAM154A Missense_Mutation p.V435M 0.39 deleterious(0.02) benign(0.064) TCGA-ER-A193-06 9 20862683 20862683 C T FOCAD Missense_Mutation p.S676F 0.35 tolerated(0.09) benign(0.349) TCGA-ER-A193-06 9 21227578 21227578 G A IFNA17 3'UTR 0.55 TCGA-ER-A193-06 9 27950040 27950040 A T LINGO2 Missense_Mutation p.H210Q 0.38 tolerated(0.1) benign(0) TCGA-ER-A193-06 9 32630810 32630810 C T TAF1L Missense_Mutation p.D1590N 0.33 deleterious(0) probably_damaging(0.997) TCGA-ER-A193-06 9 32784392 32784392 G A TMEM215 Missense_Mutation p.E71K 0.44 tolerated_low_confidence(0.34) benign(0.169) TCGA-ER-A193-06 9 33798470 33798470 C T PRSS3 Intron 0.31 TCGA-ER-A193-06 9 340236 340236 C T DOCK8 Missense_Mutation p.P532S 0.50 deleterious(0.01) benign(0.028) TCGA-ER-A193-06 9 35811980 35811980 G A SPAG8 Silent p.P21P 0.42 TCGA-ER-A193-06 9 35811981 35811981 G A SPAG8 Missense_Mutation p.P21L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-ER-A193-06 9 37126554 37126554 C T ZCCHC7 Silent p.I75I 0.48 TCGA-ER-A193-06 9 38396887 38396887 G A ALDH1B1 Missense_Mutation p.G381D 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 9 4826969 4826969 C T RCL1 Missense_Mutation p.P107L 0.16 deleterious(0.03) possibly_damaging(0.859) TCGA-ER-A193-06 9 5534921 5534921 G A PDCD1LG2 Missense_Mutation p.E78K 0.80 tolerated(0.06) benign(0.318) TCGA-ER-A193-06 9 5772956 5772956 C - KIAA1432 Frame_Shift_Del p.R1288Efs*5 0.24 TCGA-ER-A193-06 9 6460786 6460786 C T UHRF2 Silent p.F286F 0.39 TCGA-ER-A193-06 9 65505665 65505665 C T SPATA31A7 Missense_Mutation p.G632E 0.41 tolerated(0.19) possibly_damaging(0.49) TCGA-ER-A193-06 9 65506301 65506301 G A SPATA31A7 Missense_Mutation p.P420L 0.36 deleterious(0) probably_damaging(0.998) TCGA-ER-A193-06 9 70919035 70919035 A G FOXD4L3 Missense_Mutation p.I390V 0.37 tolerated_low_confidence(0.13) benign(0.031) TCGA-ER-A193-06 9 71437594 71437594 A - PIP5K1B Frame_Shift_Del p.K23Rfs*15 0.38 TCGA-ER-A193-06 9 72520888 72520888 G A C9orf135 Missense_Mutation p.D176N 0.60 tolerated(0.08) benign(0.013) TCGA-ER-A193-06 9 73477938 73477938 G A TRPM3 Silent p.S116S 0.44 TCGA-ER-A193-06 9 78911753 78911753 G A PCSK5 Silent p.K1165K 0.41 TCGA-ER-A193-06 9 79318512 79318512 G A PRUNE2 Nonsense_Mutation p.Q2673* 0.43 TCGA-ER-A193-06 9 79323726 79323726 C T PRUNE2 Missense_Mutation p.G1155E 0.40 tolerated(0.12) possibly_damaging(0.594) TCGA-ER-A193-06 9 79324223 79324223 T C PRUNE2 Silent p.P989P 0.46 TCGA-ER-A193-06 9 8486155 8486155 C T PTPRD Missense_Mutation p.G888R 0.56 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 9 85677407 85677407 G C RASEF Missense_Mutation p.R126G 0.57 tolerated(0.39) benign(0.036) TCGA-ER-A193-06 9 8633401 8633401 G A PTPRD Missense_Mutation p.P90S 0.48 deleterious(0.04) probably_damaging(0.986) TCGA-ER-A193-06 9 86584311 86584311 A C HNRNPK 3'UTR 0.07 TCGA-ER-A193-06 9 91606093 91606093 G A C9orf47 Silent p.E61E 0.30 TCGA-ER-A193-06 9 91667023 91667023 G A SHC3 Silent p.I297I 0.49 TCGA-ER-A193-06 9 97329757 97329757 C T FBP2 Intron 0.50 TCGA-ER-A193-06 9 99265987 99265987 A G CDC14B 3'UTR 0.54 TCGA-ER-A193-06 9 99581465 99581465 G A ZNF782 Silent p.F280F 0.43 TCGA-ER-A193-06 X 100402756 100402756 C T CENPI Missense_Mutation p.R611C 0.57 deleterious(0) possibly_damaging(0.79) TCGA-ER-A193-06 X 100547850 100547850 C - TAF7L Frame_Shift_Del p.D62Tfs*26 0.42 TCGA-ER-A193-06 X 10176261 10176261 C T CLCN4 Silent p.V340V 0.61 TCGA-ER-A193-06 X 101972234 101972234 C T GPRASP2 Missense_Mutation p.R813C 0.57 deleterious(0) possibly_damaging(0.846) TCGA-ER-A193-06 X 103903604 103903604 C T IL1RAPL2 Missense_Mutation p.P4S 0.54 tolerated_low_confidence(0.28) benign(0.008) TCGA-ER-A193-06 X 105450719 105450719 G A MUM1L1 Missense_Mutation p.E432K 0.68 tolerated(0.07) benign(0.38) TCGA-ER-A193-06 X 106845547 106845547 G A FRMPD3 Silent p.K1459K 0.71 TCGA-ER-A193-06 X 107829883 107829883 A T COL4A5 Missense_Mutation p.E357D 0.56 unknown(0) TCGA-ER-A193-06 X 107840636 107840636 C T COL4A5 Silent p.G539G 0.79 TCGA-ER-A193-06 X 108718988 108718988 G A GUCY2F Missense_Mutation p.P60S 0.58 deleterious(0.02) probably_damaging(0.996) TCGA-ER-A193-06 X 109694939 109694939 C T RGAG1 Missense_Mutation p.P365L 0.56 deleterious(0.01) possibly_damaging(0.736) TCGA-ER-A193-06 X 109696046 109696046 C T RGAG1 Missense_Mutation p.S734L 0.46 tolerated(0.2) benign(0.009) TCGA-ER-A193-06 X 109764433 109764433 G A TDGF1P3 RNA 0.78 TCGA-ER-A193-06 X 110439124 110439124 A C PAK3 Missense_Mutation p.K425Q 0.64 deleterious(0) probably_damaging(0.999) TCGA-ER-A193-06 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.73 deleterious(0) probably_damaging(0.945) TCGA-ER-A193-06 X 115304175 115304175 G A AGTR2 Missense_Mutation p.M214I 0.72 tolerated(0.07) benign(0.178) TCGA-ER-A193-06 X 118923942 118923942 G A RPL39 Silent p.F12F 0.10 TCGA-ER-A193-06 X 12516910 12516910 C T FRMPD4 Silent p.F51F 0.67 TCGA-ER-A193-06 X 127185837 127185837 C T ACTRT1 Missense_Mutation p.E117K 0.66 tolerated(0.35) benign(0.009) TCGA-ER-A193-06 X 12904432 12904432 C T TLR7 Missense_Mutation p.P269S 0.59 deleterious(0.04) probably_damaging(0.955) TCGA-ER-A193-06 X 132826495 132826495 G A GPC3 Silent p.F421F 0.54 TCGA-ER-A193-06 X 134990694 134990694 G A SAGE1 Silent p.Q453Q 0.69 TCGA-ER-A193-06 X 140785600 140785600 G A SPANXD 3'UTR 0.62 TCGA-ER-A193-06 X 140984495 140984495 G A MAGEC3 Intron 0.56 TCGA-ER-A193-06 X 148037297 148037297 G A AFF2 Silent p.T574T 0.66 TCGA-ER-A193-06 X 150789486 150789486 C T PASD1 Missense_Mutation p.P98S 0.62 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A193-06 X 150909283 150909283 T C CNGA2 Missense_Mutation p.F131S 0.64 deleterious(0.02) benign(0.164) TCGA-ER-A193-06 X 151900427 151900427 C T MAGEA12 Missense_Mutation p.R125Q 0.66 tolerated(0.53) benign(0.012) TCGA-ER-A193-06 X 153577854 153577854 G A FLNA Silent p.A2544A 0.53 TCGA-ER-A193-06 X 153577876 153577876 G A FLNA Missense_Mutation p.S2537F 0.48 deleterious(0.03) benign(0.167) TCGA-ER-A193-06 X 154013346 154013346 T G MPP1 Missense_Mutation p.Y255S 0.62 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A193-06 X 154132639 154132639 C T F8 Missense_Mutation p.R1916K 0.58 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A193-06 X 155119253 155119253 A T VAMP7 Nonsense_Mutation p.K42* 0.38 TCGA-ER-A193-06 X 155127842 155127842 G A VAMP7 Missense_Mutation p.G91S 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A193-06 X 155252770 155252770 G A WASH6P RNA 0.36 TCGA-ER-A193-06 X 18923922 18923922 G A PHKA2 Silent p.L954L 0.61 TCGA-ER-A193-06 X 22117197 22117197 C T PHEX Missense_Mutation p.S336F 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A193-06 X 24759606 24759606 C T POLA1 Silent p.I771I 0.57 TCGA-ER-A193-06 X 26157478 26157478 G A MAGEB18 Missense_Mutation p.E126K 0.62 tolerated(0.12) probably_damaging(0.973) TCGA-ER-A193-06 X 26213249 26213249 C T MAGEB6 3'UTR 0.65 TCGA-ER-A193-06 X 30237111 30237111 G A MAGEB2 Silent p.L138L 0.45 TCGA-ER-A193-06 X 31090110 31090110 C T FTHL17 5'UTR 0.59 TCGA-ER-A193-06 X 34150261 34150261 G A FAM47A Silent p.T45T 0.56 TCGA-ER-A193-06 X 36162702 36162702 G A CHDC2 Missense_Mutation p.E429K 0.48 deleterious_low_confidence(0.03) benign(0.008) TCGA-ER-A193-06 X 40456558 40456558 G A ATP6AP2 Missense_Mutation p.E120K 0.66 tolerated(0.3) benign(0.015) TCGA-ER-A193-06 X 41205845 41205845 A C DDX3X Missense_Mutation p.I529L 0.62 deleterious(0) probably_damaging(1) TCGA-ER-A193-06 X 47272784 47272784 G A ZNF157 Missense_Mutation p.G438R 0.87 deleterious(0) probably_damaging(0.994) TCGA-ER-A193-06 X 47775930 47775930 C T ZNF81 Nonsense_Mutation p.Q629* 0.67 TCGA-ER-A193-06 X 48776077 48776077 G A PIM2 Missense_Mutation p.P12L 0.65 tolerated(0.2) benign(0.039) TCGA-ER-A193-06 X 48776078 48776078 G A PIM2 Missense_Mutation p.P12S 0.65 tolerated(0.39) benign(0.039) TCGA-ER-A193-06 X 49370666 49370666 C T GAGE1 3'UTR 0.71 TCGA-ER-A193-06 X 55650949 55650949 C T FOXR2 Missense_Mutation p.L269F 0.55 tolerated(0.05) benign(0.424) TCGA-ER-A193-06 X 55651143 55651143 C T FOXR2 3'UTR 0.50 TCGA-ER-A193-06 X 65476031 65476031 C T HEPH Missense_Mutation p.R973W 0.55 deleterious(0.01) possibly_damaging(0.88) TCGA-ER-A193-06 X 71350719 71350719 G A RGAG4 Silent p.I224I 0.60 TCGA-ER-A193-06 X 73066488 73066488 C T XIST RNA 0.51 TCGA-ER-A193-06 X 76711794 76711794 C T FGF16 Silent p.F44F 0.49 TCGA-ER-A193-06 X 76711795 76711795 C T FGF16 Missense_Mutation p.R45W 0.47 possibly_damaging(0.755) TCGA-ER-A193-06 X 77528607 77528607 T G CYSLTR1 Missense_Mutation p.I213L 0.50 tolerated(0.13) benign(0.191) TCGA-ER-A193-06 X 78010978 78010978 C T LPAR4 Silent p.I204I 0.65 TCGA-ER-A193-06 X 78011197 78011197 C T LPAR4 Silent p.S277S 0.78 TCGA-ER-A193-06 X 78427282 78427282 G A GPR174 Missense_Mutation p.E260K 0.59 tolerated(0.6) benign(0) TCGA-ER-A193-06 X 79286410 79286410 C T TBX22 Silent p.L455L 0.66 TCGA-ER-A193-06 X 80377118 80377118 C T HMGN5 5'UTR 0.64 TCGA-ER-A193-06 X 83371240 83371240 C T RPS6KA6 Nonsense_Mutation p.W335* 0.28 TCGA-ER-A193-06 X 99551530 99551530 A G PCDH19 Silent p.P1064P 0.61 TCGA-ER-A193-06 Y 6115650 6115650 C T TSPY2 Silent p.F204F 0.25 TCGA-ER-A193-06 Y 6955439 6955439 C T TBL1Y Missense_Mutation p.S471F 0.52 deleterious(0) probably_damaging(0.912) TCGA-ER-A193-06 Y 7224202 7224202 C T PRKY RNA 0.50 TCGA-ER-A194-01 10 102055947 102055947 A G PKD2L1 Missense_Mutation p.F430L 0.29 tolerated(0.13) possibly_damaging(0.795) TCGA-ER-A194-01 10 102896658 102896658 G A TLX1 Silent p.S327S 0.36 TCGA-ER-A194-01 10 103339940 103339940 C A POLL Intron 0.10 TCGA-ER-A194-01 10 1043233 1043233 C T GTPBP4 Silent p.S182S 0.32 TCGA-ER-A194-01 10 105801078 105801078 C T COL17A1 Missense_Mutation p.G877E 0.16 possibly_damaging(0.548) TCGA-ER-A194-01 10 105830236 105830236 G A COL17A1 Silent p.I185I 0.34 TCGA-ER-A194-01 10 106152112 106152112 C T CCDC147 Missense_Mutation p.S496L 0.38 deleterious(0.01) possibly_damaging(0.509) TCGA-ER-A194-01 10 106209924 106209924 G A CCDC147 Silent p.K824K 0.34 TCGA-ER-A194-01 10 106865240 106865240 C T SORCS3 Silent p.S393S 0.28 TCGA-ER-A194-01 10 116049328 116049328 G A VWA2 3'UTR 0.25 TCGA-ER-A194-01 10 118957035 118957035 C T KCNK18 Silent p.C12C 0.26 TCGA-ER-A194-01 10 123843413 123843413 G A TACC2 Silent p.V466V 0.31 TCGA-ER-A194-01 10 123845850 123845850 G A TACC2 Missense_Mutation p.E1279K 0.26 possibly_damaging(0.504) TCGA-ER-A194-01 10 123846885 123846885 C T TACC2 Missense_Mutation p.P1624S 0.14 benign(0.018) TCGA-ER-A194-01 10 123846886 123846886 C T TACC2 Missense_Mutation p.P1624L 0.15 benign(0.006) TCGA-ER-A194-01 10 124266289 124266289 C T HTRA1 Missense_Mutation p.S287F 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 10 124458859 124458859 C T C10orf120 Silent p.E82E 0.35 TCGA-ER-A194-01 10 125526566 125526566 C T CPXM2 Missense_Mutation p.D468N 0.26 deleterious(0.04) benign(0.151) TCGA-ER-A194-01 10 129906504 129906504 C T MKI67 Silent p.L1200L 0.32 TCGA-ER-A194-01 10 134017385 134017385 C T DPYSL4 Silent p.S527S 0.31 TCGA-ER-A194-01 10 134521849 134521849 G A INPP5A Silent p.T169T 0.22 TCGA-ER-A194-01 10 135000137 135000137 C T KNDC1 Missense_Mutation p.P429S 0.21 tolerated(0.83) benign(0.004) TCGA-ER-A194-01 10 13534629 13534629 C T BEND7 Silent p.L221L 0.30 TCGA-ER-A194-01 10 17113537 17113537 C T CUBN Missense_Mutation p.G838E 0.25 tolerated(0.41) possibly_damaging(0.752) TCGA-ER-A194-01 10 23319537 23319537 A G ARMC3 Silent p.G686G 0.43 TCGA-ER-A194-01 10 24721977 24721977 G A KIAA1217 Missense_Mutation p.E203K 0.24 deleterious(0) probably_damaging(0.997) TCGA-ER-A194-01 10 26463421 26463421 G A MYO3A Missense_Mutation p.D1410N 0.32 tolerated_low_confidence(0.38) benign(0.001) TCGA-ER-A194-01 10 26558050 26558050 G A GAD2 Missense_Mutation p.G308E 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 10 27436456 27436456 G A YME1L1 Missense_Mutation p.R104C 0.15 tolerated_low_confidence(0.11) benign(0.008) TCGA-ER-A194-01 10 28224093 28224093 C T ARMC4 Missense_Mutation p.G781R 0.31 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 10 28273951 28273951 G A ARMC4 Missense_Mutation p.S191L 0.29 deleterious(0) possibly_damaging(0.855) TCGA-ER-A194-01 10 30315034 30315034 G A KIAA1462 Missense_Mutation p.P1348L 0.25 tolerated(0.27) probably_damaging(0.991) TCGA-ER-A194-01 10 31815683 31815683 G A ZEB1 Missense_Mutation p.G957R 0.29 deleterious(0) probably_damaging(0.984) TCGA-ER-A194-01 10 35929907 35929907 A G FZD8 Missense_Mutation p.Y151H 0.40 tolerated(0.36) unknown(0) TCGA-ER-A194-01 10 47087479 47087479 C T NPY4R Silent p.V232V 0.15 TCGA-ER-A194-01 10 48428932 48428932 G T GDF10 Missense_Mutation p.F318L 0.21 tolerated(0.33) benign(0.013) TCGA-ER-A194-01 10 51994258 51994258 C T ASAH2 Missense_Mutation p.G248R 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 10 52066846 52066846 C T SGMS1 3'UTR 0.41 TCGA-ER-A194-01 10 5436040 5436040 C T TUBAL3 Missense_Mutation p.E261K 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ER-A194-01 10 55566502 55566502 G A PCDH15 Missense_Mutation p.P1628L 0.29 deleterious_low_confidence(0.04) benign(0) TCGA-ER-A194-01 10 55839143 55839143 C T PCDH15 Missense_Mutation p.S680N 0.24 deleterious(0.05) benign(0.348) TCGA-ER-A194-01 10 61926588 61926588 C T ANK3 Missense_Mutation p.D849N 0.30 probably_damaging(0.965) TCGA-ER-A194-01 10 61965609 61965609 G A ANK3 Nonsense_Mutation p.R412* 0.26 TCGA-ER-A194-01 10 6470173 6470173 G A PRKCQ Missense_Mutation p.S706F 0.27 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-ER-A194-01 10 70156567 70156567 C A RUFY2 Missense_Mutation p.R158L 0.27 deleterious(0) possibly_damaging(0.462) TCGA-ER-A194-01 10 73039664 73039664 G A UNC5B Missense_Mutation p.D56N 0.31 deleterious(0.03) benign(0.048) TCGA-ER-A194-01 10 76468274 76468274 A G ADK 3'Flank 0.25 TCGA-ER-A194-01 10 79750874 79750874 G A POLR3A Silent p.L947L 0.32 TCGA-ER-A194-01 10 81058188 81058188 A C ZMIZ1 Missense_Mutation p.N506T 0.30 probably_damaging(0.909) TCGA-ER-A194-01 10 81109500 81109500 C T PPIF Silent p.F102F 0.17 TCGA-ER-A194-01 10 81319108 81319108 C T SFTPA2 Silent p.R44R 0.10 TCGA-ER-A194-01 10 81371713 81371713 G A SFTPA1 Silent p.R59R 0.24 TCGA-ER-A194-01 10 85981717 85981717 C T LRIT2 Missense_Mutation p.E538K 0.32 tolerated(0.15) benign(0.004) TCGA-ER-A194-01 10 88683489 88683489 C T BMPR1A 3'UTR 0.27 TCGA-ER-A194-01 10 88702456 88702456 G A MMRN2 Silent p.A695A 0.27 TCGA-ER-A194-01 10 88911342 88911342 C T FAM35A Silent p.F77F 0.30 TCGA-ER-A194-01 10 94828104 94828104 G A CYP26C1 Missense_Mutation p.V407M 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 10 95360152 95360152 C T RBP4 Missense_Mutation p.G118E 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 10 95537348 95537348 C T LGI1 Silent p.F135F 0.27 TCGA-ER-A194-01 10 95720860 95720860 C T PIPSL RNA 0.27 TCGA-ER-A194-01 10 96447961 96447961 G A CYP2C18 Silent p.G137G 0.25 TCGA-ER-A194-01 10 97956719 97956719 C T BLNK Missense_Mutation p.R399Q 0.29 deleterious(0.01) possibly_damaging(0.48) TCGA-ER-A194-01 10 98416637 98416637 G A PIK3AP1 Missense_Mutation p.S162F 0.31 deleterious(0.05) benign(0.043) TCGA-ER-A194-01 10 98985884 98985884 G A ARHGAP19 Missense_Mutation p.L494F 0.29 tolerated_low_confidence(0.23) probably_damaging(0.969) TCGA-ER-A194-01 11 102573848 102573848 T A MMP27 Missense_Mutation p.I115L 0.26 deleterious(0.02) benign(0.111) TCGA-ER-A194-01 11 102710968 102710968 G A MMP3 Missense_Mutation p.S269F 0.24 deleterious(0.04) possibly_damaging(0.609) TCGA-ER-A194-01 11 103908310 103908310 C T DDI1 Missense_Mutation p.P254S 0.48 deleterious(0.02) possibly_damaging(0.709) TCGA-ER-A194-01 11 104902005 104902005 G A CASP1 Missense_Mutation p.P114S 0.36 tolerated(0.6) benign(0.002) TCGA-ER-A194-01 11 1099233 1099233 G A MUC2 Silent p.R2404R 0.17 TCGA-ER-A194-01 11 111426001 111426001 T A LAYN Missense_Mutation p.F223Y 0.44 deleterious(0.03) possibly_damaging(0.493) TCGA-ER-A194-01 11 113075226 113075226 C T NCAM1 Nonsense_Mutation p.Q175* 0.65 TCGA-ER-A194-01 11 116661246 116661246 C T APOA5 Silent p.R233R 0.48 TCGA-ER-A194-01 11 116691979 116691979 C T APOA4 Silent p.Q265Q 0.47 TCGA-ER-A194-01 11 117351222 117351222 C T DSCAML1 Nonsense_Mutation p.W967* 0.42 TCGA-ER-A194-01 11 121477932 121477932 C T SORL1 Missense_Mutation p.S1700F 0.39 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 11 1220180 1220180 G A MUC5AC RNA 0.28 TCGA-ER-A194-01 11 124413290 124413290 C T OR8B12 Silent p.R87R 0.43 TCGA-ER-A194-01 11 124413547 124413547 C T OR8B12 Missense_Mutation p.A2T 0.41 tolerated_low_confidence(0.15) benign(0.007) TCGA-ER-A194-01 11 132081940 132081940 C T NTM Missense_Mutation p.S142F 0.19 deleterious(0) probably_damaging(0.967) TCGA-ER-A194-01 11 133789663 133789663 G A IGSF9B Silent p.T1319T 0.25 TCGA-ER-A194-01 11 134076535 134076535 G A NCAPD3 Silent p.S325S 0.32 TCGA-ER-A194-01 11 134079302 134079302 G A NCAPD3 Nonsense_Mutation p.R213* 0.22 TCGA-ER-A194-01 11 1629276 1629276 G A KRTAP5-3 Missense_Mutation p.R114C 0.37 deleterious(0.05) unknown(0) TCGA-ER-A194-01 11 17191264 17191264 C T PIK3C2A Missense_Mutation p.G9R 0.23 tolerated_low_confidence(0.09) benign(0.015) TCGA-ER-A194-01 11 18194742 18194742 G A MRGPRX4 5'UTR 0.16 TCGA-ER-A194-01 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.30 TCGA-ER-A194-01 11 20057522 20057522 C T NAV2 Missense_Mutation p.S952F 0.13 deleterious(0) probably_damaging(0.997) TCGA-ER-A194-01 11 25071642 25071642 G A LUZP2 Missense_Mutation p.G275E 0.26 tolerated(1) benign(0.001) TCGA-ER-A194-01 11 27412653 27412653 G A LGR4 Missense_Mutation p.A130V 0.30 tolerated(0.08) benign(0.07) TCGA-ER-A194-01 11 32410715 32410715 G T WT1 Silent p.P481P 0.23 TCGA-ER-A194-01 11 36511831 36511831 G A TRAF6 Missense_Mutation p.H376Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-ER-A194-01 11 40137207 40137207 G A LRRC4C Silent p.I212I 0.32 TCGA-ER-A194-01 11 403156 403156 C T PKP3 Nonsense_Mutation p.Q606* 0.50 TCGA-ER-A194-01 11 404583 404583 G A PKP3 3'UTR 0.11 TCGA-ER-A194-01 11 4598907 4598907 C T C11orf40 Intron 0.30 TCGA-ER-A194-01 11 46321636 46321636 G A CREB3L1 Missense_Mutation p.E85K 0.47 deleterious(0) probably_damaging(0.997) TCGA-ER-A194-01 11 4673854 4673854 C A OR51E1 Missense_Mutation p.P33Q 0.34 deleterious(0) probably_damaging(0.986) TCGA-ER-A194-01 11 47189579 47189579 G A ARFGAP2 Silent p.P362P 0.31 TCGA-ER-A194-01 11 4790276 4790276 G A OR51F1 Missense_Mutation p.P291L 0.18 deleterious(0) probably_damaging(0.959) TCGA-ER-A194-01 11 4790760 4790760 C T OR51F1 Missense_Mutation p.D130N 0.28 tolerated(1) benign(0.008) TCGA-ER-A194-01 11 48285719 48285719 C T OR4X1 Missense_Mutation p.H103Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 11 48347047 48347047 C T OR4C3 Silent p.L185L 0.17 TCGA-ER-A194-01 11 4843555 4843555 C T OR51F2 Nonsense_Mutation p.Q314* 0.25 TCGA-ER-A194-01 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.31 tolerated(0.09) benign(0.141) TCGA-ER-A194-01 11 4870027 4870027 G A OR51S1 Missense_Mutation p.L138F 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 11 489449 489449 C T PTDSS2 Missense_Mutation p.R302C 0.27 deleterious(0.03) possibly_damaging(0.901) TCGA-ER-A194-01 11 49208219 49208219 C T FOLH1 Missense_Mutation p.G206R 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 11 5021041 5021041 C T OR51L1 Missense_Mutation p.L277F 0.30 tolerated(0.17) benign(0.032) TCGA-ER-A194-01 11 5142422 5142422 C T OR52A4 RNA 0.26 TCGA-ER-A194-01 11 51516172 51516172 G A OR4C46 Silent p.R297R 0.17 TCGA-ER-A194-01 11 5173466 5173466 G A OR52A1 Missense_Mutation p.S45F 0.24 tolerated(0.71) benign(0.005) TCGA-ER-A194-01 11 5274519 5274519 G A HBG2 Silent p.S144S 0.41 TCGA-ER-A194-01 11 5274520 5274520 G A HBG2 Missense_Mutation p.S144F 0.41 deleterious(0.05) benign(0.053) TCGA-ER-A194-01 11 534285 534285 C T HRAS Missense_Mutation p.G13D 0.24 deleterious(0.04) possibly_damaging(0.506) TCGA-ER-A194-01 11 534286 534286 C T HRAS Missense_Mutation p.G13S 0.24 deleterious(0.02) possibly_damaging(0.654) TCGA-ER-A194-01 11 5443763 5443763 T C OR51Q1 Silent p.F111F 0.36 TCGA-ER-A194-01 11 55135756 55135756 C T OR4A15 Missense_Mutation p.H133Y 0.29 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-ER-A194-01 11 55322780 55322780 C T OR4C15 Missense_Mutation p.P333L 0.20 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-ER-A194-01 11 55944103 55944103 G A OR5J2 Missense_Mutation p.D4N 0.26 tolerated(0.34) benign(0.002) TCGA-ER-A194-01 11 56258728 56258728 C T OR5M8 Missense_Mutation p.G40E 0.22 deleterious(0.01) possibly_damaging(0.621) TCGA-ER-A194-01 11 56431219 56431219 G A OR5AR1 Missense_Mutation p.D20N 0.21 tolerated(0.93) benign(0.043) TCGA-ER-A194-01 11 57088068 57088068 G A TNKS1BP1 Silent p.P71P 0.39 TCGA-ER-A194-01 11 57147028 57147028 G A PRG3 Missense_Mutation p.P105L 0.24 deleterious(0.01) benign(0.285) TCGA-ER-A194-01 11 57317648 57317648 G A SMTNL1 3'UTR 0.33 TCGA-ER-A194-01 11 5799163 5799163 C T OR52N5 Silent p.A234A 0.34 TCGA-ER-A194-01 11 57996128 57996128 C T OR10Q1 Missense_Mutation p.E74K 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 11 5841772 5841772 C T OR52N2 Silent p.S69S 0.29 TCGA-ER-A194-01 11 5905976 5905976 G A OR52E4 Missense_Mutation p.G152R 0.28 deleterious(0.02) probably_damaging(0.988) TCGA-ER-A194-01 11 59271650 59271650 C T OR4D11 Missense_Mutation p.S201F 0.27 tolerated(0.07) probably_damaging(1) TCGA-ER-A194-01 11 601608 601608 C T PHRF1 Silent p.T353T 0.22 TCGA-ER-A194-01 11 601609 601609 C T PHRF1 Missense_Mutation p.P354S 0.21 tolerated(0.18) benign(0.069) TCGA-ER-A194-01 11 6023577 6023577 G A OR56A4 Missense_Mutation p.L268F 0.18 tolerated(0.19) benign(0.205) TCGA-ER-A194-01 11 6023579 6023579 A T OR56A4 Missense_Mutation p.I267N 0.18 deleterious(0.01) possibly_damaging(0.789) TCGA-ER-A194-01 11 60704128 60704128 C T TMEM132A Missense_Mutation p.P942S 0.13 tolerated(0.37) benign(0.002) TCGA-ER-A194-01 11 60704132 60704132 G A TMEM132A Missense_Mutation p.G943E 0.23 tolerated(0.13) benign(0.008) TCGA-ER-A194-01 11 62445468 62445468 A - UBXN1 Frame_Shift_Del p.L138Hfs*21 0.23 TCGA-ER-A194-01 11 62752106 62752106 G A SLC22A6 Silent p.I19I 0.35 TCGA-ER-A194-01 11 62931375 62931375 G A SLC22A25 Missense_Mutation p.P522L 0.34 deleterious(0) probably_damaging(0.984) TCGA-ER-A194-01 11 6424635 6424635 C T APBB1 Splice_Site p.X319_splice 0.32 TCGA-ER-A194-01 11 6424912 6424912 G A APBB1 Missense_Mutation p.P288S 0.32 tolerated(0.33) benign(0.06) TCGA-ER-A194-01 11 64427964 64427964 G A NRXN2 Silent p.I743I 0.32 TCGA-ER-A194-01 11 64573726 64573726 C T MEN1 Missense_Mutation p.D348N 0.32 tolerated(0.56) benign(0.013) TCGA-ER-A194-01 11 64573727 64573727 C T MEN1 Silent p.A347A 0.31 TCGA-ER-A194-01 11 64602559 64602559 C T CDC42BPG Missense_Mutation p.E674K 0.32 tolerated(0.14) probably_damaging(0.993) TCGA-ER-A194-01 11 65004214 65004214 C T SLC22A20 RNA 0.30 TCGA-ER-A194-01 11 65088624 65088624 C T CDC42EP2 Silent p.F85F 0.48 TCGA-ER-A194-01 11 65266682 65266682 A T MALAT1 RNA 0.15 TCGA-ER-A194-01 11 65402909 65402909 G A PCNXL3 Missense_Mutation p.R1725Q 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-ER-A194-01 11 66100171 66100171 G A RIN1 Missense_Mutation p.T643I 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 11 66293621 66293621 C T BBS1 Missense_Mutation p.R380W 0.21 deleterious(0) probably_damaging(0.992) TCGA-ER-A194-01 11 66329733 66329733 G A CTSF 3'Flank 0.25 TCGA-ER-A194-01 11 6646055 6646055 G A DCHS1 Silent p.S2397S 0.15 TCGA-ER-A194-01 11 66473159 66473159 C T SPTBN2 Silent p.G601G 0.29 TCGA-ER-A194-01 11 68772911 68772911 G A MRGPRF Silent p.I289I 0.33 TCGA-ER-A194-01 11 7021121 7021121 T C ZNF214 Missense_Mutation p.H598R 0.31 tolerated(0.73) benign(0.015) TCGA-ER-A194-01 11 70331778 70331778 C T SHANK2 Missense_Mutation p.M1541I 0.22 tolerated(0.58) benign(0.019) TCGA-ER-A194-01 11 70331897 70331897 C T SHANK2 Missense_Mutation p.D1502N 0.26 deleterious(0) possibly_damaging(0.555) TCGA-ER-A194-01 11 71903350 71903350 G A FOLR1 Missense_Mutation p.E45K 0.21 tolerated(0.82) benign(0.102) TCGA-ER-A194-01 11 72379456 72379456 G A PDE2A Intron 0.39 TCGA-ER-A194-01 11 76831883 76831883 C T CAPN5 Missense_Mutation p.P472L 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 11 76853860 76853860 G A MYO7A Missense_Mutation p.E42K 0.42 deleterious(0) probably_damaging(0.972) TCGA-ER-A194-01 11 77409626 77409626 G A RSF1 Missense_Mutation p.S874L 0.42 tolerated(0.1) benign(0.01) TCGA-ER-A194-01 11 7817623 7817623 C T OR5P2 Silent p.R289R 0.27 TCGA-ER-A194-01 11 78437165 78437165 C T TENM4 Missense_Mutation p.G1170E 0.28 deleterious(0) probably_damaging(0.95) TCGA-ER-A194-01 11 7984847 7984847 C T NLRP10 Missense_Mutation p.G66R 0.24 deleterious(0.02) probably_damaging(0.925) TCGA-ER-A194-01 11 89768382 89768382 G A TRIM49C Translation_Start_Site p.M1? 0.47 deleterious(0.01) possibly_damaging(0.53) TCGA-ER-A194-01 11 89911178 89911178 C T NAALAD2 Missense_Mutation p.P584L 0.29 deleterious(0) probably_damaging(0.997) TCGA-ER-A194-01 11 9202503 9202503 A G DENND5A Silent p.P422P 0.26 TCGA-ER-A194-01 11 92085682 92085682 G A FAT3 Missense_Mutation p.G135E 0.30 probably_damaging(0.98) TCGA-ER-A194-01 11 92624224 92624224 G A FAT3 Missense_Mutation p.S4572N 0.24 benign(0) TCGA-ER-A194-01 11 93104339 93104339 G A CCDC67 Missense_Mutation p.E228K 0.20 deleterious(0) benign(0.025) TCGA-ER-A194-01 11 94341757 94341757 C T PIWIL4 Silent p.S616S 0.30 TCGA-ER-A194-01 12 100478272 100478272 G A UHRF1BP1L Missense_Mutation p.P424S 0.26 tolerated(0.06) benign(0.056) TCGA-ER-A194-01 12 101870678 101870678 G A SPIC 5'UTR 0.25 TCGA-ER-A194-01 12 103984745 103984745 G A STAB2 Missense_Mutation p.G51E 0.28 tolerated(1) benign(0.001) TCGA-ER-A194-01 12 10954564 10954564 G A TAS2R7 Silent p.F202F 0.12 TCGA-ER-A194-01 12 10958828 10958828 G A TAS2R8 Missense_Mutation p.S251F 0.33 tolerated(1) benign(0.006) TCGA-ER-A194-01 12 10961740 10961740 G A TAS2R9 Missense_Mutation p.P312L 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A194-01 12 112672959 112672959 G A HECTD4 Missense_Mutation p.A1800V 0.24 possibly_damaging(0.458) TCGA-ER-A194-01 12 113532887 113532887 G A DTX1 Missense_Mutation p.G476E 0.34 deleterious(0) probably_damaging(0.919) TCGA-ER-A194-01 12 113616795 113616795 G A DDX54 Silent p.L201L 0.33 TCGA-ER-A194-01 12 11506030 11506030 T G PRB1 3'UTR 0.24 TCGA-ER-A194-01 12 116534506 116534506 G A MED13L Silent p.P149P 0.16 TCGA-ER-A194-01 12 117718564 117718564 G A NOS1 Missense_Mutation p.T497I 0.26 tolerated(1) benign(0) TCGA-ER-A194-01 12 118639110 118639110 C T TAOK3 Silent p.E326E 0.34 TCGA-ER-A194-01 12 119909868 119909868 A T CCDC60 Missense_Mutation p.K80N 0.31 deleterious(0) probably_damaging(0.928) TCGA-ER-A194-01 12 122079521 122079521 C T ORAI1 Missense_Mutation p.P295L 0.29 tolerated_low_confidence(0.28) benign(0.002) TCGA-ER-A194-01 12 122079522 122079522 C T ORAI1 Silent p.P295P 0.30 TCGA-ER-A194-01 12 123187247 123187247 A G HCAR2 Missense_Mutation p.L195P 0.29 deleterious(0) probably_damaging(0.994) TCGA-ER-A194-01 12 123282718 123282718 G A CCDC62 Silent p.K316K 0.39 TCGA-ER-A194-01 12 130184401 130184401 G A TMEM132D Missense_Mutation p.P308S 0.22 tolerated(0.33) benign(0.015) TCGA-ER-A194-01 12 130921619 130921619 G A RIMBP2 Missense_Mutation p.P608L 0.25 deleterious(0.05) benign(0.005) TCGA-ER-A194-01 12 130922999 130922999 C T RIMBP2 Missense_Mutation p.V506I 0.29 tolerated(0.87) probably_damaging(0.913) TCGA-ER-A194-01 12 131280561 131280561 T G STX2 3'UTR 0.49 TCGA-ER-A194-01 12 132396488 132396488 C T ULK1 Missense_Mutation p.S317F 0.16 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 12 133218876 133218876 G A POLE Missense_Mutation p.S1687F 0.33 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 12 13716301 13716301 G A GRIN2B Nonsense_Mutation p.Q1291* 0.27 TCGA-ER-A194-01 12 14769633 14769633 G A GUCY2C Silent p.T968T 0.33 TCGA-ER-A194-01 12 18534758 18534758 G A PIK3C2G Missense_Mutation p.E606K 0.31 tolerated(0.31) possibly_damaging(0.777) TCGA-ER-A194-01 12 18891646 18891646 G A CAPZA3 Silent p.K148K 0.28 TCGA-ER-A194-01 12 20790163 20790163 C T PDE3A Missense_Mutation p.L711F 0.38 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 12 21205109 21205109 G A SLCO1B7 Missense_Mutation p.E424K 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-ER-A194-01 12 21453303 21453303 C T SLCO1A2 Missense_Mutation p.E297K 0.25 tolerated(0.84) benign(0.012) TCGA-ER-A194-01 12 21699320 21699320 C T GYS2 Missense_Mutation p.G503R 0.19 deleterious(0) probably_damaging(0.958) TCGA-ER-A194-01 12 32994008 32994008 C T PKP2 Missense_Mutation p.G548S 0.22 tolerated(0.06) benign(0.279) TCGA-ER-A194-01 12 3387672 3387672 C T TSPAN9 Missense_Mutation p.S50L 0.24 tolerated(0.05) possibly_damaging(0.537) TCGA-ER-A194-01 12 38710566 38710566 C T ALG10B 5'UTR 0.24 TCGA-ER-A194-01 12 40040211 40040211 A C C12orf40 Missense_Mutation p.M95L 0.30 tolerated(0.07) benign(0.007) TCGA-ER-A194-01 12 40692992 40692992 C T LRRK2 Silent p.S1143S 0.20 TCGA-ER-A194-01 12 47629874 47629874 C T PCED1B Missense_Mutation p.S343F 0.29 tolerated(0.16) possibly_damaging(0.675) TCGA-ER-A194-01 12 48919933 48919933 C T OR8S1 Silent p.I173I 0.34 TCGA-ER-A194-01 12 4919946 4919946 G A KCNA6 Missense_Mutation p.G247S 0.23 tolerated(0.74) benign(0.004) TCGA-ER-A194-01 12 49434949 49434949 G A KMT2D Missense_Mutation p.P2202S 0.16 benign(0.039) TCGA-ER-A194-01 12 49494192 49494192 G A LMBR1L Missense_Mutation p.P407S 0.17 deleterious(0) possibly_damaging(0.811) TCGA-ER-A194-01 12 50344626 50344626 C T AQP2 Missense_Mutation p.R5C 0.14 tolerated(0.1) benign(0.003) TCGA-ER-A194-01 12 51888893 51888893 C T SLC4A8 Silent p.F978F 0.34 TCGA-ER-A194-01 12 52056545 52056545 C T SCN8A Intron 0.25 TCGA-ER-A194-01 12 52709786 52709786 G A KRT83 Nonsense_Mutation p.Q385* 0.25 TCGA-ER-A194-01 12 52886893 52886893 C T KRT6A Missense_Mutation p.G27E 0.23 deleterious(0) unknown(0) TCGA-ER-A194-01 12 52941685 52941685 G A KRT71 Missense_Mutation p.L354F 0.26 deleterious(0.04) benign(0.052) TCGA-ER-A194-01 12 53042002 53042002 G A KRT2 Silent p.I359I 0.24 TCGA-ER-A194-01 12 53187985 53187985 C T KRT3 Missense_Mutation p.R259Q 0.23 tolerated(0.1) benign(0.389) TCGA-ER-A194-01 12 53722606 53722606 G T SP7 Missense_Mutation p.P207Q 0.30 tolerated(0.28) probably_damaging(0.942) TCGA-ER-A194-01 12 53823959 53823959 T C AMHR2 Missense_Mutation p.Y440H 0.28 deleterious(0) possibly_damaging(0.727) TCGA-ER-A194-01 12 54757240 54757240 G A GPR84 Silent p.F132F 0.22 TCGA-ER-A194-01 12 54799122 54799122 C T ITGA5 Missense_Mutation p.M351I 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-ER-A194-01 12 55248921 55248921 C T MUCL1 Missense_Mutation p.P27L 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-ER-A194-01 12 55820975 55820975 G A OR6C76 Silent p.%3D 0.20 TCGA-ER-A194-01 12 56030784 56030784 G A OR10P1 Missense_Mutation p.V37I 0.29 tolerated(0.92) benign(0.008) TCGA-ER-A194-01 12 56487660 56487660 C T ERBB3 Silent p.T531T 0.31 TCGA-ER-A194-01 12 56487661 56487661 C T ERBB3 Missense_Mutation p.H532Y 0.31 deleterious(0.02) benign(0.135) TCGA-ER-A194-01 12 56495909 56495909 C T ERBB3 3'UTR 0.22 TCGA-ER-A194-01 12 56559230 56559230 G A SMARCC2 Missense_Mutation p.P1004L 0.28 deleterious(0.02) unknown(0) TCGA-ER-A194-01 12 56559231 56559231 G A SMARCC2 Missense_Mutation p.P1004S 0.26 tolerated(0.09) unknown(0) TCGA-ER-A194-01 12 5685080 5685080 G A ANO2 Silent p.L847L 0.25 TCGA-ER-A194-01 12 5860075 5860075 G A ANO2 Missense_Mutation p.L369F 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 12 62749225 62749225 G A USP15 Missense_Mutation p.G295E 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 12 64202503 64202503 C T TMEM5 Silent p.A321A 0.30 TCGA-ER-A194-01 12 6463994 6463994 C T SCNN1A Silent p.G447G 0.24 TCGA-ER-A194-01 12 6560008 6560008 G A CD27 Intron 0.26 TCGA-ER-A194-01 12 6560009 6560009 G A CD27 Intron 0.25 TCGA-ER-A194-01 12 6645673 6645673 G A GAPDH Missense_Mutation p.G15R 0.31 deleterious_low_confidence(0.03) benign(0.419) TCGA-ER-A194-01 12 6645674 6645674 G A GAPDH Missense_Mutation p.G15E 0.30 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-ER-A194-01 12 670564 670564 C T B4GALNT3 Missense_Mutation p.H982Y 0.33 tolerated(0.67) benign(0.02) TCGA-ER-A194-01 12 71978528 71978528 G A LGR5 3'UTR 0.31 TCGA-ER-A194-01 12 7242309 7242309 G A C1R Missense_Mutation p.R148W 0.37 deleterious(0.01) possibly_damaging(0.54) TCGA-ER-A194-01 12 72680484 72680484 C T TRHDE Missense_Mutation p.S268L 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A194-01 12 7470658 7470658 G A ACSM4 Nonsense_Mutation p.W267* 0.40 TCGA-ER-A194-01 12 75441953 75441953 G A KCNC2 Missense_Mutation p.S587F 0.25 deleterious_low_confidence(0.02) benign(0.139) TCGA-ER-A194-01 12 75687068 75687068 C T CAPS2 Missense_Mutation p.R394Q 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A194-01 12 77191256 77191256 C T ZDHHC17 Missense_Mutation p.P46S 0.36 tolerated(0.51) benign(0) TCGA-ER-A194-01 12 7802203 7802203 C T APOBEC1 Silent p.T217T 0.23 TCGA-ER-A194-01 12 8051529 8051529 C T NANOGP1 RNA 0.33 TCGA-ER-A194-01 12 80633149 80633149 C T OTOGL Missense_Mutation p.P319S 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 12 81627142 81627142 C T ACSS3 Silent p.T537T 0.24 TCGA-ER-A194-01 12 83251006 83251006 C T TMTC2 Missense_Mutation p.L101F 0.33 deleterious(0) probably_damaging(0.967) TCGA-ER-A194-01 12 8329946 8329946 G A ZNF705A Missense_Mutation p.G224R 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A194-01 12 85434361 85434361 G A LRRIQ1 Missense_Mutation p.E76K 0.20 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 12 90020308 90020308 T G ATP2B1 Missense_Mutation p.K351T 0.26 tolerated(0.07) benign(0.38) TCGA-ER-A194-01 13 110825108 110825108 C T COL4A1 Missense_Mutation p.G1172E 0.24 probably_damaging(0.999) TCGA-ER-A194-01 13 110857848 110857848 C T COL4A1 Missense_Mutation p.G299E 0.23 unknown(0) TCGA-ER-A194-01 13 111080842 111080842 G A COL4A2 Missense_Mutation p.G130E 0.30 probably_damaging(1) TCGA-ER-A194-01 13 113773127 113773127 G A F7 Silent p.G402G 0.31 TCGA-ER-A194-01 13 21442841 21442841 C A XPO4 Splice_Site p.X24_splice 0.34 TCGA-ER-A194-01 13 21548968 21548968 G A LATS2 3'UTR 0.23 TCGA-ER-A194-01 13 23928945 23928945 G A SACS Silent p.A602A 0.34 TCGA-ER-A194-01 13 24465787 24465787 G A C1QTNF9B Missense_Mutation p.P215S 0.17 deleterious(0) possibly_damaging(0.858) TCGA-ER-A194-01 13 24895547 24895547 C T AL359736.1 Missense_Mutation p.G7E 0.14 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-ER-A194-01 13 25144839 25144839 G A RP11-556N21.1 RNA 0.26 TCGA-ER-A194-01 13 26621093 26621093 G A SHISA2 Missense_Mutation p.P149L 0.16 tolerated(0.05) benign(0.101) TCGA-ER-A194-01 13 27333417 27333417 C T GPR12 Missense_Mutation p.R183Q 0.30 tolerated(0.57) benign(0.001) TCGA-ER-A194-01 13 29600974 29600974 G A MTUS2 Silent p.L723L 0.30 TCGA-ER-A194-01 13 31548997 31548997 G A TEX26 Missense_Mutation p.D275N 0.25 tolerated(0.14) benign(0.081) TCGA-ER-A194-01 13 31711433 31711433 G A HSPH1 3'UTR 0.25 TCGA-ER-A194-01 13 32811678 32811678 C T FRY Silent p.I1991I 0.32 TCGA-ER-A194-01 13 32954009 32954009 C T BRCA2 Nonsense_Mutation p.Q3026* 0.21 TCGA-ER-A194-01 13 33635004 33635004 C T KL Silent p.S596S 0.23 TCGA-ER-A194-01 13 33760185 33760185 G A STARD13 Intron 0.24 TCGA-ER-A194-01 13 33760186 33760186 G T STARD13 Intron 0.29 TCGA-ER-A194-01 13 35517115 35517115 C T NBEA Missense_Mutation p.S53L 0.13 deleterious_low_confidence(0.01) benign(0.019) TCGA-ER-A194-01 13 37011773 37011773 C G CCNA1 Missense_Mutation p.T102R 0.22 tolerated(0.16) benign(0.372) TCGA-ER-A194-01 13 39358893 39358893 C T FREM2 Silent p.I1989I 0.32 TCGA-ER-A194-01 13 39438411 39438411 G A FREM2 Splice_Site p.X2551_splice 0.26 TCGA-ER-A194-01 13 39438412 39438412 G A FREM2 Missense_Mutation p.G2551D 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 13 47012009 47012009 C T PPP1R2P4 RNA 0.44 TCGA-ER-A194-01 13 49741385 49741385 A C FNDC3A Missense_Mutation p.E328A 0.18 deleterious(0.01) benign(0.152) TCGA-ER-A194-01 13 49749598 49749598 C T FNDC3A Missense_Mutation p.S484F 0.24 deleterious(0.04) possibly_damaging(0.709) TCGA-ER-A194-01 13 52440151 52440151 G A CCDC70 Missense_Mutation p.E213K 0.27 tolerated(0.37) benign(0.075) TCGA-ER-A194-01 13 76423412 76423412 C T LMO7 Missense_Mutation p.P1217S 0.24 tolerated(0.29) benign(0.08) TCGA-ER-A194-01 13 77844167 77844167 C T MYCBP2 Missense_Mutation p.R369K 0.34 benign(0) TCGA-ER-A194-01 13 78335034 78335034 C T SLAIN1 Missense_Mutation p.L332F 0.34 deleterious(0) probably_damaging(0.934) TCGA-ER-A194-01 13 79189644 79189644 G A RNF219 3'UTR 0.45 TCGA-ER-A194-01 13 84453842 84453842 C T SLITRK1 Missense_Mutation p.E601K 0.33 tolerated(0.73) benign(0.09) TCGA-ER-A194-01 13 92345629 92345629 C T GPC5 Missense_Mutation p.P172S 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 13 95673862 95673862 G A ABCC4 Silent p.P1315P 0.24 TCGA-ER-A194-01 13 96239835 96239835 C T DZIP1 Missense_Mutation p.G726R 0.40 tolerated(0.06) possibly_damaging(0.747) TCGA-ER-A194-01 13 97485030 97485030 G A HS6ST3 Missense_Mutation p.E332K 0.31 tolerated(0.5) possibly_damaging(0.654) TCGA-ER-A194-01 14 100795245 100795245 C T SLC25A47 Silent p.A170A 0.24 TCGA-ER-A194-01 14 105406934 105406934 G A AHNAK2 Missense_Mutation p.P4952S 0.39 benign(0.025) TCGA-ER-A194-01 14 105521847 105521847 C T GPR132 5'UTR 0.26 TCGA-ER-A194-01 14 106208489 106208489 G A IGHG1 Silent p.S137S 0.30 TCGA-ER-A194-01 14 106236264 106236264 G A IGHG3 Missense_Mutation p.L181F 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 14 106866677 106866677 G A IGHV3-38 Missense_Mutation p.S26F 0.19 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-ER-A194-01 14 107282795 107282795 C T IGHV7-81 Silent p.A116A 0.21 TCGA-ER-A194-01 14 20248751 20248751 G A OR4M1 Silent p.K90K 0.11 TCGA-ER-A194-01 14 20249241 20249241 G A OR4M1 Missense_Mutation p.G254R 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-ER-A194-01 14 20296110 20296110 T A OR4N2 Missense_Mutation p.F168Y 0.10 tolerated(0.12) probably_damaging(1) TCGA-ER-A194-01 14 20692623 20692623 G A OR11H6 Missense_Mutation p.R252Q 0.19 tolerated(0.11) benign(0.046) TCGA-ER-A194-01 14 20813132 20813132 C T PARP2 Missense_Mutation p.P30S 0.20 tolerated_low_confidence(0.76) benign(0.001) TCGA-ER-A194-01 14 20841288 20841288 C T TEP1 Missense_Mutation p.R2278K 0.29 tolerated(0.21) benign(0.015) TCGA-ER-A194-01 14 21796666 21796666 G A RPGRIP1 Silent p.K993K 0.17 TCGA-ER-A194-01 14 21991828 21991828 G A SALL2 Silent p.F678F 0.32 TCGA-ER-A194-01 14 22133627 22133627 G A OR4E2 Missense_Mutation p.E111K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A194-01 14 22237103 22237103 G A TRAV6 Silent p.L60L 0.17 TCGA-ER-A194-01 14 22280016 22280016 G A TRAV9-1 Missense_Mutation p.A69T 0.17 tolerated(0.07) benign(0.194) TCGA-ER-A194-01 14 22294115 22294115 C T TRAV10 Silent p.F73F 0.31 TCGA-ER-A194-01 14 22309897 22309897 C T TRAV12-1 Missense_Mutation p.S93F 0.24 tolerated(0.05) possibly_damaging(0.86) TCGA-ER-A194-01 14 22356428 22356428 C T TRAV12-2 Missense_Mutation p.S29F 0.27 deleterious(0) possibly_damaging(0.582) TCGA-ER-A194-01 14 22508843 22508843 G A TRAV20 5'UTR 0.43 TCGA-ER-A194-01 14 22783267 22783267 G T TRAV40 Missense_Mutation p.G78V 0.42 tolerated(0.07) benign(0.004) TCGA-ER-A194-01 14 22989409 22989409 G A TRAJ23 Missense_Mutation p.G6E 0.32 unknown(0) TCGA-ER-A194-01 14 23235902 23235902 C T OXA1L Missense_Mutation p.P58S 0.24 tolerated_low_confidence(0.46) benign(0.004) TCGA-ER-A194-01 14 23793583 23793583 C T PABPN1 Intron 0.20 TCGA-ER-A194-01 14 23902316 23902316 G A MYH7 Missense_Mutation p.R108C 0.42 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 14 24647306 24647306 C T REC8 Missense_Mutation p.P291S 0.24 tolerated(0.42) possibly_damaging(0.451) TCGA-ER-A194-01 14 31776024 31776024 G A AL136418.1 5'Flank 0.19 TCGA-ER-A194-01 14 38724228 38724228 G A CLEC14A Missense_Mutation p.P334S 0.19 tolerated(0.31) benign(0.01) TCGA-ER-A194-01 14 39514386 39514386 G A SEC23A Missense_Mutation p.S627F 0.43 deleterious(0) benign(0.368) TCGA-ER-A194-01 14 63174573 63174573 G A KCNH5 Missense_Mutation p.R874C 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A194-01 14 63246607 63246607 C T KCNH5 Missense_Mutation p.E620K 0.13 deleterious(0.03) possibly_damaging(0.871) TCGA-ER-A194-01 14 63453901 63453901 C T KCNH5 Nonsense_Mutation p.W146* 0.34 TCGA-ER-A194-01 14 64691225 64691225 A G SYNE2 Missense_Mutation p.D6810G 0.31 benign(0.009) TCGA-ER-A194-01 14 65417755 65417755 C T RAB15 Missense_Mutation p.G121S 0.33 tolerated(0.54) benign(0.08) TCGA-ER-A194-01 14 69262882 69262882 C T ZFP36L1 5'Flank 0.29 TCGA-ER-A194-01 14 70712557 70712557 C T ADAM21P1 RNA 0.30 TCGA-ER-A194-01 14 70712649 70712649 G A ADAM21P1 RNA 0.25 TCGA-ER-A194-01 14 70990578 70990578 G A ADAM20 Silent p.F349F 0.25 TCGA-ER-A194-01 14 71209278 71209278 G A MAP3K9 Missense_Mutation p.R453W 0.28 deleterious(0) probably_damaging(0.924) TCGA-ER-A194-01 14 74706502 74706502 G A VSX2 Missense_Mutation p.G80R 0.36 tolerated(0.11) possibly_damaging(0.823) TCGA-ER-A194-01 14 77812744 77812744 G A TMED8 Missense_Mutation p.A92V 0.29 deleterious(0.03) benign(0.075) TCGA-ER-A194-01 14 77880383 77880383 G A NOXRED1 Silent p.I81I 0.46 TCGA-ER-A194-01 14 77931932 77931932 C T AHSA1 Silent p.I204I 0.26 TCGA-ER-A194-01 14 79434518 79434518 G A NRXN3 Missense_Mutation p.D618N 0.31 tolerated(0.22) benign(0.259) TCGA-ER-A194-01 14 81574933 81574933 T C TSHR Intron 0.28 TCGA-ER-A194-01 14 86089644 86089644 G A FLRT2 Missense_Mutation p.D596N 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 14 91642297 91642297 G A C14orf159 Silent p.E209E 0.20 TCGA-ER-A194-01 14 93650029 93650029 G A MOAP1 Missense_Mutation p.H187Y 0.31 deleterious(0.01) possibly_damaging(0.905) TCGA-ER-A194-01 14 94909009 94909009 G A SERPINA11 Silent p.L401L 0.30 TCGA-ER-A194-01 14 95081333 95081333 G A SERPINA3 Silent p.K185K 0.29 TCGA-ER-A194-01 14 95903265 95903265 C G SYNE3 Silent p.L810L 0.23 TCGA-ER-A194-01 14 96136854 96136854 C T TCL6 RNA 0.11 TCGA-ER-A194-01 14 96707028 96707028 C T BDKRB2 Silent p.F121F 0.27 TCGA-ER-A194-01 15 101586288 101586288 C T LRRK1 Silent p.F1022F 0.24 TCGA-ER-A194-01 15 101971544 101971544 G A PCSK6 Missense_Mutation p.P212L 0.28 deleterious(0) probably_damaging(0.992) TCGA-ER-A194-01 15 20488852 20488852 G A CHEK2P2 RNA 0.12 TCGA-ER-A194-01 15 22369155 22369155 C T OR4M2 Missense_Mutation p.P194S 0.16 deleterious(0.02) benign(0.079) TCGA-ER-A194-01 15 23261828 23261828 G A GOLGA8I Missense_Mutation p.E314K 0.22 deleterious(0.02) probably_damaging(0.927) TCGA-ER-A194-01 15 24922342 24922342 C T NPAP1 Missense_Mutation p.P443L 0.29 tolerated(0.19) probably_damaging(0.964) TCGA-ER-A194-01 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.26 tolerated(0.56) benign(0.041) TCGA-ER-A194-01 15 25223559 25223559 C A SNRPN Missense_Mutation p.P231T 0.23 tolerated_low_confidence(0.58) unknown(0) TCGA-ER-A194-01 15 25425564 25425564 C T SNORD115-6 5'Flank 0.59 TCGA-ER-A194-01 15 25446337 25446337 C T SNORD115-19 5'Flank 0.32 TCGA-ER-A194-01 15 25494378 25494378 G A SNORD115-43 RNA 0.21 TCGA-ER-A194-01 15 25601062 25601062 G A UBE3A Missense_Mutation p.P704S 0.32 tolerated(0.4) benign(0.147) TCGA-ER-A194-01 15 26026289 26026289 G A ATP10A Silent p.F177F 0.23 TCGA-ER-A194-01 15 28511016 28511016 G A HERC2 Missense_Mutation p.A568V 0.25 benign(0) TCGA-ER-A194-01 15 29385344 29385344 C T APBA2 Missense_Mutation p.S379F 0.30 deleterious(0) probably_damaging(0.981) TCGA-ER-A194-01 15 31355449 31355449 G A TRPM1 Silent p.G296G 0.27 TCGA-ER-A194-01 15 31362167 31362167 G A TRPM1 Intron 0.31 TCGA-ER-A194-01 15 33962736 33962736 G A RYR3 Missense_Mutation p.E1947K 0.26 benign(0.002) TCGA-ER-A194-01 15 38786957 38786957 C T RASGRP1 Missense_Mutation p.G629R 0.29 tolerated(0.15) benign(0.055) TCGA-ER-A194-01 15 39882213 39882213 C T THBS1 Missense_Mutation p.H712Y 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A194-01 15 39884805 39884805 G A THBS1 Missense_Mutation p.D857N 0.22 deleterious(0) probably_damaging(0.993) TCGA-ER-A194-01 15 40661034 40661034 C T DISP2 Silent p.F907F 0.17 TCGA-ER-A194-01 15 41483784 41483784 C T EXD1 Splice_Site p.X183_splice 0.17 TCGA-ER-A194-01 15 42276146 42276146 C T PLA2G4E Missense_Mutation p.E805K 0.12 tolerated(0.12) probably_damaging(0.997) TCGA-ER-A194-01 15 43038231 43038231 G A TTBK2 Missense_Mutation p.S1166F 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A194-01 15 43931847 43931847 G A CATSPER2 Silent p.A237A 0.29 TCGA-ER-A194-01 15 44109528 44109528 G A MFAP1 Silent p.A66A 0.27 TCGA-ER-A194-01 15 44109529 44109529 G A MFAP1 Missense_Mutation p.A66V 0.27 tolerated(0.28) possibly_damaging(0.483) TCGA-ER-A194-01 15 44158651 44158651 C T WDR76 3'UTR 0.27 TCGA-ER-A194-01 15 45436370 45436370 C T DUOX1 Silent p.F691F 0.28 TCGA-ER-A194-01 15 52534273 52534273 C T MYO5C Missense_Mutation p.G843E 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 15 53081035 53081035 C T ONECUT1 Silent p.R349R 0.25 TCGA-ER-A194-01 15 53081560 53081560 G A ONECUT1 Silent p.G174G 0.20 TCGA-ER-A194-01 15 56142799 56142799 G T NEDD4 Silent p.R777R 0.31 TCGA-ER-A194-01 15 56996359 56996359 G A ZNF280D Silent p.I45I 0.45 TCGA-ER-A194-01 15 63937858 63937858 C T HERC1 Nonsense_Mutation p.W3634* 0.30 TCGA-ER-A194-01 15 64448234 64448234 G A PPIB Silent p.I213I 0.50 TCGA-ER-A194-01 15 65558956 65558956 G A PARP16 Missense_Mutation p.R155C 0.27 deleterious(0) probably_damaging(0.99) TCGA-ER-A194-01 15 65676369 65676369 G A IGDCC4 Missense_Mutation p.S1244F 0.28 deleterious_low_confidence(0) benign(0.082) TCGA-ER-A194-01 15 68620560 68620560 C T ITGA11 Missense_Mutation p.E648K 0.32 tolerated(0.06) probably_damaging(0.976) TCGA-ER-A194-01 15 69732812 69732812 C T KIF23 Missense_Mutation p.P685S 0.28 tolerated(0.14) benign(0.197) TCGA-ER-A194-01 15 72040924 72040924 G A THSD4 Nonsense_Mutation p.W802* 0.19 TCGA-ER-A194-01 15 72643491 72643491 G A HEXA Missense_Mutation p.P219S 0.35 deleterious(0.01) probably_damaging(1) TCGA-ER-A194-01 15 73007710 73007710 G A BBS4 Missense_Mutation p.S100N 0.27 tolerated(1) benign(0.007) TCGA-ER-A194-01 15 74963841 74963841 C T EDC3 Missense_Mutation p.E147K 0.30 tolerated(0.12) benign(0.004) TCGA-ER-A194-01 15 75042806 75042806 C T CYP1A2 Missense_Mutation p.R243C 0.30 deleterious(0.02) possibly_damaging(0.853) TCGA-ER-A194-01 15 75673967 75673967 G A SIN3A Missense_Mutation p.P1092L 0.31 tolerated(0.1) possibly_damaging(0.88) TCGA-ER-A194-01 15 77322884 77322884 C T PSTPIP1 Missense_Mutation p.R202W 0.26 deleterious(0) probably_damaging(0.972) TCGA-ER-A194-01 15 77328215 77328215 T G PSTPIP1 Missense_Mutation p.I353R 0.12 tolerated(0.41) benign(0) TCGA-ER-A194-01 15 81199005 81199005 G A KIAA1199 Silent p.G471G 0.24 TCGA-ER-A194-01 15 89008048 89008048 G A MRPL46 Silent p.L159L 0.38 TCGA-ER-A194-01 15 89386648 89386648 C T ACAN Missense_Mutation p.R274W 0.43 deleterious(0) unknown(0) TCGA-ER-A194-01 15 90246318 90246318 C T WDR93 Silent p.S147S 0.31 TCGA-ER-A194-01 15 90903428 90903428 G A ZNF774 Missense_Mutation p.G122E 0.19 tolerated(0.07) benign(0.003) TCGA-ER-A194-01 15 93595421 93595421 C T RGMA Silent p.K157K 0.39 TCGA-ER-A194-01 16 10851854 10851854 C T NUBP1 Silent p.I192I 0.34 TCGA-ER-A194-01 16 1370213 1370213 C T UBE2I Missense_Mutation p.P88S 0.33 tolerated(0.06) benign(0.111) TCGA-ER-A194-01 16 14041756 14041756 C T ERCC4 Missense_Mutation p.S768F 0.28 deleterious(0.04) possibly_damaging(0.775) TCGA-ER-A194-01 16 14989569 14989569 C T NOMO1 3'UTR 0.14 TCGA-ER-A194-01 16 15457778 15457778 T C NPIPA5 Missense_Mutation p.K264R 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A194-01 16 15457780 15457780 G T NPIPA5 Silent p.L263L 0.10 TCGA-ER-A194-01 16 15844178 15844178 G A MYH11 Silent p.I632I 0.31 TCGA-ER-A194-01 16 15932125 15932125 C T MYH11 Intron 0.26 TCGA-ER-A194-01 16 160569 160569 G A NPRL3 Silent p.L195L 0.25 TCGA-ER-A194-01 16 1889285 1889285 T C MEIOB Missense_Mutation p.S397G 0.33 tolerated(0.29) benign(0.003) TCGA-ER-A194-01 16 19452036 19452036 C T TMC5 Missense_Mutation p.P226S 0.31 deleterious_low_confidence(0.04) benign(0.035) TCGA-ER-A194-01 16 19729613 19729613 C T IQCK 5'UTR 0.30 TCGA-ER-A194-01 16 20974815 20974815 C A DNAH3 Missense_Mutation p.W3464L 0.22 tolerated(0.06) benign(0.082) TCGA-ER-A194-01 16 21049085 21049085 G A DNAH3 Nonsense_Mutation p.Q1650* 0.30 TCGA-ER-A194-01 16 21063026 21063026 C T DNAH3 Silent p.R1401R 0.20 TCGA-ER-A194-01 16 21213342 21213342 G A ZP2 Silent p.F430F 0.33 TCGA-ER-A194-01 16 21328340 21328340 C T CRYM-AS1 RNA 0.29 TCGA-ER-A194-01 16 2226162 2226162 C T TRAF7 Missense_Mutation p.S620F 0.25 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 16 22580503 22580503 G A RP11-368J21.3 RNA 0.13 TCGA-ER-A194-01 16 22926899 22926899 G A HS3ST2 3'UTR 0.13 TCGA-ER-A194-01 16 23701189 23701189 C A PLK1 Silent p.T539T 0.35 TCGA-ER-A194-01 16 2376264 2376264 G A ABCA3 Silent p.V22V 0.30 TCGA-ER-A194-01 16 27480728 27480728 G A GTF3C1 Missense_Mutation p.S1653F 0.27 deleterious(0) benign(0.097) TCGA-ER-A194-01 16 28509498 28509498 C T APOBR Missense_Mutation p.R1018C 0.35 deleterious(0) unknown(0) TCGA-ER-A194-01 16 28603445 28603445 C T SULT1A2 Nonsense_Mutation p.W264* 0.20 TCGA-ER-A194-01 16 30535997 30535997 G A ZNF768 Silent p.A488A 0.24 TCGA-ER-A194-01 16 30666100 30666100 C T PRR14 Missense_Mutation p.T270I 0.26 tolerated(0.15) benign(0.005) TCGA-ER-A194-01 16 30722902 30722902 C T SRCAP Silent p.S443S 0.25 TCGA-ER-A194-01 16 31201606 31201606 C T FUS Silent p.G393G 0.30 TCGA-ER-A194-01 16 31422076 31422076 C T ITGAD Silent p.A411A 0.17 TCGA-ER-A194-01 16 31927110 31927110 C T ZNF267 Missense_Mutation p.H514Y 0.19 deleterious(0.01) probably_damaging(0.951) TCGA-ER-A194-01 16 3298933 3298933 C T MEFV Silent p.G444G 0.24 TCGA-ER-A194-01 16 348073 348073 A C AXIN1 Missense_Mutation p.V478G 0.27 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 16 48221123 48221123 G A ABCC11 Silent p.F974F 0.47 TCGA-ER-A194-01 16 4828127 4828127 C T SEPT12 Missense_Mutation p.A279T 0.21 tolerated(0.56) benign(0.054) TCGA-ER-A194-01 16 49671862 49671862 C T ZNF423 Missense_Mutation p.G401R 0.42 tolerated(0.48) benign(0.332) TCGA-ER-A194-01 16 50664108 50664108 C T NKD1 Silent p.S158S 0.35 TCGA-ER-A194-01 16 51173027 51173027 G A SALL1 Missense_Mutation p.R1036C 0.46 deleterious(0.02) benign(0.178) TCGA-ER-A194-01 16 56913085 56913085 C T SLC12A3 Silent p.F427F 0.50 TCGA-ER-A194-01 16 68011567 68011567 G A DPEP3 Silent p.L333L 0.57 TCGA-ER-A194-01 16 68011700 68011700 C T DPEP3 Missense_Mutation p.M288I 0.48 deleterious(0.04) possibly_damaging(0.523) TCGA-ER-A194-01 16 70884520 70884520 C T HYDIN Missense_Mutation p.G4161E 0.48 probably_damaging(0.988) TCGA-ER-A194-01 16 70926328 70926328 A C HYDIN Missense_Mutation p.V3118G 0.15 possibly_damaging(0.851) TCGA-ER-A194-01 16 71423902 71423902 G A CALB2 3'UTR 0.62 TCGA-ER-A194-01 16 71803557 71803557 C T AP1G1 Missense_Mutation p.R204Q 0.42 tolerated(0.27) benign(0.016) TCGA-ER-A194-01 16 720985 720985 C T RHOT2 Missense_Mutation p.R245W 0.36 deleterious(0) possibly_damaging(0.773) TCGA-ER-A194-01 16 74445659 74445659 G A CLEC18B Missense_Mutation p.P298S 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A194-01 16 74526909 74526909 G A GLG1 Missense_Mutation p.R394C 0.58 deleterious(0) probably_damaging(0.921) TCGA-ER-A194-01 16 75446505 75446505 C T CFDP1 Silent p.E110E 0.51 TCGA-ER-A194-01 16 75573925 75573925 G A TMEM231 Silent p.P335P 0.37 TCGA-ER-A194-01 16 76389314 76389314 G A CNTNAP4 Missense_Mutation p.G74E 0.41 tolerated(0.13) probably_damaging(0.989) TCGA-ER-A194-01 16 83159046 83159046 G A CDH13 Silent p.V188V 0.26 TCGA-ER-A194-01 16 84203959 84203959 G A DNAAF1 Missense_Mutation p.E509K 0.47 tolerated(0.1) benign(0.142) TCGA-ER-A194-01 16 84476138 84476138 C T ATP2C2 Missense_Mutation p.A445V 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 16 88902153 88902153 C T GALNS Silent p.L246L 0.38 TCGA-ER-A194-01 16 9943739 9943739 G A GRIN2A Missense_Mutation p.P401L 0.31 tolerated(0.44) benign(0.006) TCGA-ER-A194-01 17 10296288 10296288 C T MYH8 Missense_Mutation p.E1775K 0.26 deleterious(0.03) benign(0.167) TCGA-ER-A194-01 17 10362651 10362651 C T MYH4 Missense_Mutation p.E502K 0.24 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 17 10399321 10399321 G A MYH1 Silent p.I1705I 0.25 TCGA-ER-A194-01 17 10404995 10404995 C T MYH1 Silent p.E1088E 0.22 TCGA-ER-A194-01 17 10412891 10412891 C T MYH1 Missense_Mutation p.E500K 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-ER-A194-01 17 10435073 10435073 C T MYH2 Missense_Mutation p.M858I 0.21 deleterious(0.01) benign(0.018) TCGA-ER-A194-01 17 10600887 10600887 C T SCO1 5'Flank 0.23 TCGA-ER-A194-01 17 11556245 11556245 G A DNAH9 Missense_Mutation p.D841N 0.36 benign(0.434) TCGA-ER-A194-01 17 11608463 11608463 G A DNAH9 Missense_Mutation p.G1838E 0.30 probably_damaging(0.999) TCGA-ER-A194-01 17 11631201 11631201 C T DNAH9 Nonsense_Mutation p.R1926* 0.28 TCGA-ER-A194-01 17 12655897 12655897 C T MYOCD Missense_Mutation p.P431L 0.29 tolerated(0.15) possibly_damaging(0.786) TCGA-ER-A194-01 17 12656526 12656526 G A MYOCD Missense_Mutation p.G641R 0.30 deleterious(0.01) probably_damaging(0.909) TCGA-ER-A194-01 17 1634460 1634460 C T WDR81 Silent p.Y1355Y 0.47 TCGA-ER-A194-01 17 16725556 16725556 C T AC022596.6 RNA 0.24 TCGA-ER-A194-01 17 17062058 17062058 C T MPRIP Silent p.F596F 0.29 TCGA-ER-A194-01 17 177309 177309 C T RPH3AL Missense_Mutation p.G9E 0.28 deleterious(0) possibly_damaging(0.817) TCGA-ER-A194-01 17 18030465 18030465 G A MYO15A Missense_Mutation p.E1340K 0.16 unknown(0) TCGA-ER-A194-01 17 18391014 18391014 C T LGALS9C Silent p.H129H 0.30 TCGA-ER-A194-01 17 18539030 18539030 G A TBC1D28 3'UTR 0.50 TCGA-ER-A194-01 17 18770639 18770639 C T PRPSAP2 Missense_Mutation p.P55L 0.32 deleterious(0.04) benign(0.005) TCGA-ER-A194-01 17 21731166 21731166 C T UBBP4 Silent p.F156F 0.31 TCGA-ER-A194-01 17 2239776 2239776 C T TSR1 5'UTR 0.20 TCGA-ER-A194-01 17 26667480 26667480 G A TNFAIP1 Silent p.V117V 0.50 TCGA-ER-A194-01 17 28652039 28652039 C T TMIGD1 Silent p.V145V 0.25 TCGA-ER-A194-01 17 2923856 2923856 G C RAP1GAP2 Missense_Mutation p.G573A 0.25 deleterious(0.02) benign(0.103) TCGA-ER-A194-01 17 2923857 2923857 C T RAP1GAP2 Silent p.G573G 0.25 TCGA-ER-A194-01 17 29552206 29552206 C T NF1 Missense_Mutation p.H647Y 0.25 tolerated(0.14) benign(0.005) TCGA-ER-A194-01 17 29556163 29556163 C T NF1 Missense_Mutation p.L844F 0.65 deleterious(0) probably_damaging(0.986) TCGA-ER-A194-01 17 29685510 29685510 G A NF1 Silent p.L2661L 0.19 TCGA-ER-A194-01 17 31322518 31322518 G A SPACA3 Silent p.Q42Q 0.54 TCGA-ER-A194-01 17 3301285 3301285 G A OR1E1 Silent p.L140L 0.28 TCGA-ER-A194-01 17 3343612 3343612 C T SPATA22 Silent p.L307L 0.22 TCGA-ER-A194-01 17 3343620 3343620 G A SPATA22 Missense_Mutation p.P305S 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 17 35798039 35798039 C T TADA2A Intron 0.25 TCGA-ER-A194-01 17 35914025 35914025 T C SYNRG Missense_Mutation p.I600M 0.58 tolerated(0.08) benign(0.22) TCGA-ER-A194-01 17 36498978 36498978 G A GPR179 Missense_Mutation p.P232L 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 17 3664359 3664359 C T ITGAE Silent p.K182K 0.24 TCGA-ER-A194-01 17 3667190 3667190 G A ITGAE Nonsense_Mutation p.Q74* 0.20 TCGA-ER-A194-01 17 38854487 38854487 C T KRT24 3'UTR 0.20 TCGA-ER-A194-01 17 38855823 38855823 C T KRT24 Missense_Mutation p.E412K 0.32 deleterious(0) probably_damaging(0.924) TCGA-ER-A194-01 17 38926062 38926062 C T KRT26 Missense_Mutation p.E305K 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 17 39334108 39334108 G A KRTAP4-2 Silent p.P103P 0.30 TCGA-ER-A194-01 17 39594361 39594361 C T KRT38 Missense_Mutation p.E409K 0.26 deleterious(0) probably_damaging(0.969) TCGA-ER-A194-01 17 42461933 42461933 C T ITGA2B Missense_Mutation p.E274K 0.21 tolerated(0.05) benign(0.09) TCGA-ER-A194-01 17 43226931 43226931 C T HEXIM1 Missense_Mutation p.S125F 0.92 tolerated_low_confidence(0.13) benign(0.105) TCGA-ER-A194-01 17 43226932 43226932 C T HEXIM1 Silent p.S125S 0.92 TCGA-ER-A194-01 17 44060965 44060965 C T MAPT Silent p.I265I 0.38 TCGA-ER-A194-01 17 45012681 45012681 C T GOSR2 Intron 0.29 TCGA-ER-A194-01 17 45914465 45914465 G A LRRC46 Silent p.T315T 0.22 TCGA-ER-A194-01 17 46110637 46110637 G A COPZ2 Silent p.I98I 0.62 TCGA-ER-A194-01 17 46622290 46622290 G A HOXB2 5'UTR 0.22 TCGA-ER-A194-01 17 46847345 46847345 C T TTLL6 Missense_Mutation p.D719N 0.22 tolerated_low_confidence(0.24) possibly_damaging(0.754) TCGA-ER-A194-01 17 47656161 47656161 G A NXPH3 Silent p.P86P 0.60 TCGA-ER-A194-01 17 47788559 47788559 G A FAM117A 3'UTR 0.16 TCGA-ER-A194-01 17 4856149 4856149 C T ENO3 Silent p.L49L 0.19 TCGA-ER-A194-01 17 48603324 48603324 C T MYCBPAP Missense_Mutation p.A665V 0.21 tolerated(0.16) benign(0.081) TCGA-ER-A194-01 17 48735529 48735529 G A ABCC3 Silent p.R191R 0.50 TCGA-ER-A194-01 17 5052055 5052055 G A USP6 Missense_Mutation p.R879Q 0.14 tolerated_low_confidence(0.06) probably_damaging(0.984) TCGA-ER-A194-01 17 51900748 51900748 G A KIF2B Missense_Mutation p.M118I 0.15 tolerated(0.19) benign(0.002) TCGA-ER-A194-01 17 5433822 5433822 G A NLRP1 Missense_Mutation p.P1167S 0.11 deleterious(0) probably_damaging(0.971) TCGA-ER-A194-01 17 54926178 54926178 G A DGKE Missense_Mutation p.R337Q 0.61 tolerated(0.31) benign(0.098) TCGA-ER-A194-01 17 55478817 55478817 C T MSI2 Silent p.F130F 0.14 TCGA-ER-A194-01 17 55957100 55957100 C A CUEDC1 Splice_Site p.X113_splice 0.22 TCGA-ER-A194-01 17 57724951 57724951 T A CLTC Missense_Mutation p.L148H 0.19 deleterious(0) probably_damaging(0.991) TCGA-ER-A194-01 17 57733268 57733268 C T CLTC Silent p.H283H 0.35 TCGA-ER-A194-01 17 58235697 58235697 G A CA4 Missense_Mutation p.E212K 0.55 tolerated(0.22) benign(0.023) TCGA-ER-A194-01 17 58286789 58286789 T A USP32 Missense_Mutation p.K847M 0.36 deleterious(0) probably_damaging(0.994) TCGA-ER-A194-01 17 60768087 60768087 G A MRC2 Missense_Mutation p.R1326Q 0.14 tolerated(0.72) benign(0.009) TCGA-ER-A194-01 17 60814205 60814205 G A MARCH10 Missense_Mutation p.H342Y 0.60 deleterious(0.01) benign(0.242) TCGA-ER-A194-01 17 61511954 61511954 C T CYB561 Missense_Mutation p.G189S 0.14 tolerated(1) benign(0.001) TCGA-ER-A194-01 17 61601685 61601685 G A KCNH6 Missense_Mutation p.G88R 0.14 deleterious(0.01) possibly_damaging(0.861) TCGA-ER-A194-01 17 61829138 61829138 G A CCDC47 Intron 0.81 TCGA-ER-A194-01 17 62026124 62026124 G A SCN4A Silent p.A997A 0.11 TCGA-ER-A194-01 17 62121504 62121504 G A ERN1 Silent p.P926P 0.14 TCGA-ER-A194-01 17 62132152 62132152 G A ERN1 Missense_Mutation p.S570F 0.13 deleterious(0.04) benign(0.007) TCGA-ER-A194-01 17 62856581 62856581 C T LRRC37A3 Missense_Mutation p.G1228E 0.31 tolerated(0.27) possibly_damaging(0.751) TCGA-ER-A194-01 17 6387564 6387564 C T PITPNM3 Missense_Mutation p.G108E 0.30 tolerated(0.16) benign(0.197) TCGA-ER-A194-01 17 64216781 64216781 G A APOH Silent p.L165L 0.17 TCGA-ER-A194-01 17 71281769 71281769 G A CDC42EP4 Missense_Mutation p.P291S 0.61 tolerated(0.16) probably_damaging(0.997) TCGA-ER-A194-01 17 7193751 7193751 G A YBX2 Missense_Mutation p.P188L 0.28 tolerated(0.11) possibly_damaging(0.713) TCGA-ER-A194-01 17 72306183 72306183 C T DNAI2 Missense_Mutation p.R459W 0.27 deleterious(0) possibly_damaging(0.898) TCGA-ER-A194-01 17 72351348 72351348 T C KIF19 Missense_Mutation p.V965A 0.08 tolerated(0.13) benign(0.002) TCGA-ER-A194-01 17 72518850 72518850 G A CD300LB 3'UTR 0.16 TCGA-ER-A194-01 17 72519668 72519668 C T CD300LB Intron 0.28 TCGA-ER-A194-01 17 72700889 72700889 G A CD300LF Missense_Mutation p.T37I 0.55 deleterious(0) benign(0.367) TCGA-ER-A194-01 17 72921748 72921748 C T OTOP2 Silent p.I137I 0.15 TCGA-ER-A194-01 17 72937809 72937809 C T OTOP3 Missense_Mutation p.S132F 0.23 deleterious(0.01) possibly_damaging(0.723) TCGA-ER-A194-01 17 73240699 73240699 C T GGA3 Splice_Site p.X100_splice 0.15 TCGA-ER-A194-01 17 73240700 73240700 C T GGA3 Silent p.K100K 0.15 TCGA-ER-A194-01 17 73555367 73555367 C T LLGL2 Silent p.L136L 0.22 TCGA-ER-A194-01 17 73623363 73623363 G C RECQL5 3'UTR 0.15 TCGA-ER-A194-01 17 7365689 7365689 G A ZBTB4 Missense_Mutation p.P871L 0.16 possibly_damaging(0.618) TCGA-ER-A194-01 17 74004508 74004508 C T EVPL Missense_Mutation p.G1593E 0.39 tolerated(1) benign(0.05) TCGA-ER-A194-01 17 74019436 74019436 C T EVPL Silent p.K139K 0.40 TCGA-ER-A194-01 17 7558930 7558930 G A ATP1B2 Missense_Mutation p.G232D 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 17 76540072 76540072 G A DNAH17 Missense_Mutation p.S800L 0.20 benign(0.137) TCGA-ER-A194-01 17 7669782 7669782 C T DNAH2 Missense_Mutation p.L1220F 0.27 possibly_damaging(0.853) TCGA-ER-A194-01 17 76832252 76832252 G A USP36 Missense_Mutation p.P65L 0.43 deleterious(0) probably_damaging(0.947) TCGA-ER-A194-01 17 7804297 7804297 C T CHD3 Missense_Mutation p.P1095S 0.25 possibly_damaging(0.641) TCGA-ER-A194-01 17 78322033 78322033 C T RNF213 Missense_Mutation p.L3300F 0.13 benign(0.172) TCGA-ER-A194-01 17 79166162 79166162 C T AZI1 Missense_Mutation p.E860K 0.24 tolerated(0.08) possibly_damaging(0.699) TCGA-ER-A194-01 17 79428108 79428108 C T RP11-1055B8.7 Missense_Mutation p.P2140L 0.14 probably_damaging(0.999) TCGA-ER-A194-01 17 79974675 79974675 G A ASPSCR1 Splice_Site p.X563_splice 0.50 TCGA-ER-A194-01 17 79974676 79974676 G A ASPSCR1 Missense_Mutation p.G563D 0.50 tolerated(0.65) probably_damaging(0.982) TCGA-ER-A194-01 17 80040926 80040926 G A FASN Silent p.S1877S 0.46 TCGA-ER-A194-01 17 8215590 8215590 C T ARHGEF15 Missense_Mutation p.P78L 0.41 tolerated_low_confidence(0.15) benign(0.002) TCGA-ER-A194-01 17 9615433 9615433 C T USP43 Silent p.L773L 0.38 TCGA-ER-A194-01 17 9632257 9632257 C T USP43 Missense_Mutation p.H1108Y 0.21 deleterious(0.01) probably_damaging(0.916) TCGA-ER-A194-01 18 10672717 10672717 G A PIEZO2 Missense_Mutation p.P2659L 0.24 deleterious(0) possibly_damaging(0.745) TCGA-ER-A194-01 18 14533108 14533108 A G POTEC Missense_Mutation p.L336P 0.20 deleterious(0.03) probably_damaging(0.939) TCGA-ER-A194-01 18 19762738 19762738 G A GATA6 Missense_Mutation p.M483I 0.23 deleterious(0) probably_damaging(0.942) TCGA-ER-A194-01 18 20877975 20877975 G A TMEM241 Missense_Mutation p.S296F 0.27 deleterious_low_confidence(0) possibly_damaging(0.576) TCGA-ER-A194-01 18 21119346 21119346 T A NPC1 Missense_Mutation p.I962F 0.22 deleterious(0.03) benign(0.042) TCGA-ER-A194-01 18 21390454 21390454 C T LAMA3 Silent p.F576F 0.30 TCGA-ER-A194-01 18 2885114 2885114 G A EMILIN2 Missense_Mutation p.R137Q 0.30 tolerated(0.1) possibly_damaging(0.656) TCGA-ER-A194-01 18 28934626 28934626 C T DSG1 Missense_Mutation p.P823S 0.26 deleterious(0.03) benign(0.343) TCGA-ER-A194-01 18 28965101 28965101 G A DSG4 Silent p.V17V 0.20 TCGA-ER-A194-01 18 29493477 29493477 G A TRAPPC8 Missense_Mutation p.S209L 0.23 tolerated(0.12) benign(0.003) TCGA-ER-A194-01 18 30093412 30093412 C T WBP11P1 RNA 0.35 TCGA-ER-A194-01 18 30257198 30257198 C T KLHL14 Missense_Mutation p.G562S 0.28 tolerated(0.09) probably_damaging(0.996) TCGA-ER-A194-01 18 30950108 30950108 C T CCDC178 Missense_Mutation p.S85N 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 18 42531195 42531195 G A SETBP1 Silent p.A630A 0.28 TCGA-ER-A194-01 18 44030289 44030289 C T RNF165 Missense_Mutation p.P216S 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-ER-A194-01 18 44260332 44260332 G A ST8SIA5 Silent p.F268F 0.36 TCGA-ER-A194-01 18 44589343 44589343 G A KATNAL2 Missense_Mutation p.G112S 0.14 tolerated(0.11) benign(0.196) TCGA-ER-A194-01 18 45567440 45567440 G A ZBTB7C Silent p.F13F 0.29 TCGA-ER-A194-01 18 47320670 47320670 G A ACAA2 Missense_Mutation p.S186L 0.24 deleterious(0) possibly_damaging(0.904) TCGA-ER-A194-01 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.29 TCGA-ER-A194-01 18 55315701 55315701 C T ATP8B1 3'UTR 0.41 TCGA-ER-A194-01 18 56939824 56939824 C T RAX Silent p.K104K 0.29 TCGA-ER-A194-01 18 5892008 5892008 G A TMEM200C Missense_Mutation p.R19C 0.26 deleterious(0) probably_damaging(0.993) TCGA-ER-A194-01 18 59221584 59221584 G A CDH20 Missense_Mutation p.E688K 0.34 tolerated(0.82) probably_damaging(0.996) TCGA-ER-A194-01 18 59221772 59221772 C T CDH20 Silent p.F750F 0.38 TCGA-ER-A194-01 18 65181047 65181047 G A DSEL Missense_Mutation p.H277Y 0.25 tolerated(0.17) probably_damaging(0.999) TCGA-ER-A194-01 18 6959408 6959408 G A LAMA1 Silent p.L2570L 0.24 TCGA-ER-A194-01 18 6986186 6986186 C T LAMA1 Missense_Mutation p.E1777K 0.25 deleterious(0) probably_damaging(0.941) TCGA-ER-A194-01 18 7034516 7034516 G A LAMA1 Silent p.I671I 0.24 TCGA-ER-A194-01 18 71930615 71930615 G A CYB5A Missense_Mutation p.S76F 0.29 tolerated(0.11) probably_damaging(0.995) TCGA-ER-A194-01 18 72228148 72228148 G A CNDP1 Missense_Mutation p.D121N 0.32 tolerated(0.05) benign(0.044) TCGA-ER-A194-01 18 77488959 77488959 C T CTDP1 Nonsense_Mutation p.Q824* 0.35 TCGA-ER-A194-01 18 8244150 8244150 G A PTPRM Missense_Mutation p.G799S 0.21 tolerated(1) benign(0.053) TCGA-ER-A194-01 18 8806976 8806976 G A SOGA2 Missense_Mutation p.R841Q 0.33 tolerated(0.05) probably_damaging(0.964) TCGA-ER-A194-01 18 9887382 9887382 C T TXNDC2 Silent p.S302S 0.24 TCGA-ER-A194-01 19 10071003 10071003 G A COL5A3 3'UTR 0.23 TCGA-ER-A194-01 19 1042114 1042114 C T ABCA7 Silent p.A118A 0.19 TCGA-ER-A194-01 19 1053431 1053431 C T ABCA7 Silent p.A1108A 0.38 TCGA-ER-A194-01 19 11170485 11170485 C T SMARCA4 Silent p.I1564I 0.29 TCGA-ER-A194-01 19 1119128 1119128 A T SBNO2 Missense_Mutation p.M470K 0.24 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 19 11332895 11332895 G A DOCK6 Silent p.D1090D 0.19 TCGA-ER-A194-01 19 11409563 11409563 G C TSPAN16 Missense_Mutation p.V95L 0.22 tolerated(0.51) benign(0.015) TCGA-ER-A194-01 19 11624724 11624724 G A ECSIT Missense_Mutation p.P137S 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 19 11892352 11892352 C T ZNF441 Silent p.L571L 0.25 TCGA-ER-A194-01 19 12637866 12637866 A C ZNF564 Silent p.V352V 0.37 TCGA-ER-A194-01 19 13220226 13220226 G A TRMT1 Missense_Mutation p.H456Y 0.31 deleterious(0) possibly_damaging(0.722) TCGA-ER-A194-01 19 13873722 13873722 C T CCDC130 Missense_Mutation p.P344L 0.37 tolerated(0.28) benign(0.01) TCGA-ER-A194-01 19 13941124 13941124 G A ZSWIM4 Missense_Mutation p.D744N 0.26 tolerated(0.14) unknown(0) TCGA-ER-A194-01 19 14000673 14000673 G A C19orf57 Silent p.S332S 0.36 TCGA-ER-A194-01 19 14080838 14080838 G T RFX1 Missense_Mutation p.F488L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A194-01 19 14204497 14204497 A C PRKACA Missense_Mutation p.D291E 0.28 deleterious(0) possibly_damaging(0.816) TCGA-ER-A194-01 19 15794496 15794496 C G CYP4F12 Missense_Mutation p.Q281E 0.27 tolerated(0.41) benign(0.019) TCGA-ER-A194-01 19 16860018 16860018 C T NWD1 Missense_Mutation p.L189F 0.32 deleterious(0.01) possibly_damaging(0.749) TCGA-ER-A194-01 19 16875936 16875936 C T NWD1 Silent p.S781S 0.19 TCGA-ER-A194-01 19 17088300 17088300 G A CPAMD8 Missense_Mutation p.H593Y 0.19 tolerated(0.39) benign(0.003) TCGA-ER-A194-01 19 17283614 17283614 C T MYO9B Missense_Mutation p.A661V 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 19 17393774 17393774 C T ANKLE1 Silent p.I141I 0.50 TCGA-ER-A194-01 19 17533109 17533109 C T MVB12A Intron 0.18 TCGA-ER-A194-01 19 18378207 18378207 T A KIAA1683 Missense_Mutation p.E48V 0.35 tolerated(0.19) possibly_damaging(0.794) TCGA-ER-A194-01 19 19312453 19312453 C T RFXANK Intron 0.33 TCGA-ER-A194-01 19 19627027 19627027 G A NDUFA13 5'UTR 0.38 TCGA-ER-A194-01 19 19654188 19654188 C T CILP2 Missense_Mutation p.S370L 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 19 19654982 19654982 G A CILP2 Missense_Mutation p.R543Q 0.27 tolerated(0.08) benign(0.073) TCGA-ER-A194-01 19 19765491 19765491 G A ATP13A1 Silent p.T558T 0.32 TCGA-ER-A194-01 19 20728643 20728643 C T ZNF737 Silent p.E122E 0.19 TCGA-ER-A194-01 19 20807009 20807009 G A ZNF626 3'UTR 0.25 TCGA-ER-A194-01 19 20959179 20959179 G A ZNF66 5'Flank 0.31 TCGA-ER-A194-01 19 21720863 21720863 C T ZNF429 Nonsense_Mutation p.R670* 0.27 TCGA-ER-A194-01 19 22575725 22575725 G A ZNF98 Silent p.F104F 0.17 TCGA-ER-A194-01 19 22940264 22940264 G A ZNF99 Missense_Mutation p.S816F 0.29 deleterious(0.02) benign(0.002) TCGA-ER-A194-01 19 23927413 23927413 C T ZNF681 Silent p.K313K 0.17 TCGA-ER-A194-01 19 31769628 31769628 G A TSHZ3 Silent p.N357N 0.24 TCGA-ER-A194-01 19 31770204 31770204 G A TSHZ3 Silent p.F165F 0.36 TCGA-ER-A194-01 19 35633349 35633349 G A FXYD1 Intron 0.34 TCGA-ER-A194-01 19 36395077 36395077 G A HCST 3'UTR 0.19 TCGA-ER-A194-01 19 36605781 36605781 C T POLR2I 5'UTR 0.21 TCGA-ER-A194-01 19 36831279 36831279 C T ZFP14 Silent p.K483K 0.28 TCGA-ER-A194-01 19 36831280 36831280 T A ZFP14 Missense_Mutation p.K483M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A194-01 19 37130221 37130221 A G ZNF461 Silent p.F342F 0.24 TCGA-ER-A194-01 19 3730690 3730690 G A TJP3 Missense_Mutation p.R209K 0.25 tolerated(0.52) benign(0.012) TCGA-ER-A194-01 19 38900601 38900601 G A RASGRP4 3'UTR 0.47 TCGA-ER-A194-01 19 38991298 38991298 C T RYR1 Missense_Mutation p.S2459F 0.14 benign(0.044) TCGA-ER-A194-01 19 41245309 41245309 C T ITPKC Silent p.A632A 0.28 TCGA-ER-A194-01 19 41355778 41355778 C T CYP2A6 Silent p.E96E 0.20 TCGA-ER-A194-01 19 42353223 42353223 G A DMRTC2 Silent p.Q218Q 0.28 TCGA-ER-A194-01 19 4237164 4237164 G A EBI3 3'UTR 0.19 TCGA-ER-A194-01 19 42482888 42482888 G A ATP1A3 Silent p.A513A 0.27 TCGA-ER-A194-01 19 42482889 42482889 G A ATP1A3 Missense_Mutation p.A513V 0.28 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 19 43233347 43233347 G A PSG3 Missense_Mutation p.L391F 0.29 tolerated(0.07) probably_damaging(0.914) TCGA-ER-A194-01 19 43236939 43236939 G A PSG3 Missense_Mutation p.L236F 0.25 deleterious(0) possibly_damaging(0.822) TCGA-ER-A194-01 19 43433748 43433748 C T PSG7 Silent p.Q185Q 0.24 TCGA-ER-A194-01 19 43579531 43579531 A C PSG2 Missense_Mutation p.S228R 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 19 44131051 44131051 C A CADM4 Silent p.V128V 0.15 TCGA-ER-A194-01 19 44251629 44251629 C T SMG9 Missense_Mutation p.D185N 0.22 deleterious(0.02) possibly_damaging(0.722) TCGA-ER-A194-01 19 44278616 44278616 G A KCNN4 Silent p.S137S 0.33 TCGA-ER-A194-01 19 44278618 44278618 A T KCNN4 Missense_Mutation p.S137T 0.33 tolerated(0.52) benign(0.001) TCGA-ER-A194-01 19 44377833 44377833 C T ZNF404 Missense_Mutation p.R178Q 0.32 tolerated(1) benign(0.001) TCGA-ER-A194-01 19 44662009 44662009 C T ZNF234 Missense_Mutation p.H614Y 0.25 deleterious(0) benign(0.349) TCGA-ER-A194-01 19 44891001 44891001 G A ZNF285 Missense_Mutation p.S469F 0.18 deleterious(0.01) possibly_damaging(0.849) TCGA-ER-A194-01 19 44892134 44892134 G A ZNF285 Silent p.I91I 0.29 TCGA-ER-A194-01 19 45175155 45175155 C T CEACAM19 5'UTR 0.34 TCGA-ER-A194-01 19 45368806 45368806 G A PVRL2 Missense_Mutation p.A123T 0.28 deleterious(0.04) possibly_damaging(0.861) TCGA-ER-A194-01 19 46393886 46393886 G A MYPOP Missense_Mutation p.P399S 0.31 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ER-A194-01 19 46443924 46443924 G A NOVA2 Missense_Mutation p.P226S 0.35 deleterious(0) unknown(0) TCGA-ER-A194-01 19 47870283 47870283 G A DHX34 Missense_Mutation p.E547K 0.26 deleterious(0) possibly_damaging(0.549) TCGA-ER-A194-01 19 47880452 47880452 C T DHX34 Missense_Mutation p.P899S 0.30 deleterious(0.02) probably_damaging(0.913) TCGA-ER-A194-01 19 47969356 47969356 G A SLC8A2 Missense_Mutation p.S102L 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 19 48806926 48806926 C T CCDC114 Silent p.L286L 0.19 TCGA-ER-A194-01 19 49640045 49640045 C T PPFIA3 Missense_Mutation p.S577F 0.25 deleterious(0.01) benign(0.1) TCGA-ER-A194-01 19 50157982 50157982 C T SCAF1 Missense_Mutation p.P1158L 0.33 possibly_damaging(0.851) TCGA-ER-A194-01 19 50926219 50926219 C T SPIB Silent p.N88N 0.22 TCGA-ER-A194-01 19 51329169 51329169 G A KLK15 Silent p.I218I 0.19 TCGA-ER-A194-01 19 51506276 51506276 G A KLK9 3'UTR 0.14 TCGA-ER-A194-01 19 51517969 51517969 G A KLK10 3'UTR 0.37 TCGA-ER-A194-01 19 51874876 51874876 C T NKG7 3'UTR 0.18 TCGA-ER-A194-01 19 51994916 51994916 G A SIGLEC12 Silent p.S589S 0.28 TCGA-ER-A194-01 19 52004848 52004848 G A SIGLEC12 Missense_Mutation p.S47F 0.20 tolerated(0.19) probably_damaging(0.915) TCGA-ER-A194-01 19 52327809 52327809 G A FPR3 Missense_Mutation p.E270K 0.39 tolerated(0.06) benign(0.117) TCGA-ER-A194-01 19 52393850 52393850 G A ZNF649 3'UTR 0.28 TCGA-ER-A194-01 19 52619357 52619357 T C ZNF616 Missense_Mutation p.K354E 0.28 deleterious(0.03) possibly_damaging(0.486) TCGA-ER-A194-01 19 52619503 52619503 G A ZNF616 Missense_Mutation p.S305F 0.25 tolerated(0.09) possibly_damaging(0.653) TCGA-ER-A194-01 19 53013890 53013890 C T ZNF578 Missense_Mutation p.H86Y 0.23 tolerated(0.07) benign(0.004) TCGA-ER-A194-01 19 53014938 53014938 C T ZNF578 Missense_Mutation p.A435V 0.25 tolerated(0.99) benign(0.005) TCGA-ER-A194-01 19 53344963 53344963 T G ZNF468 Missense_Mutation p.N195T 0.11 tolerated(0.14) possibly_damaging(0.727) TCGA-ER-A194-01 19 53857507 53857507 C T ZNF845 3'UTR 0.25 TCGA-ER-A194-01 19 54194197 54194197 C T MIR520A RNA 0.22 TCGA-ER-A194-01 19 54198488 54198488 G A MIR519B RNA 0.38 TCGA-ER-A194-01 19 54759954 54759954 G A LILRB5 Missense_Mutation p.P203S 0.19 deleterious(0.04) possibly_damaging(0.772) TCGA-ER-A194-01 19 54784380 54784380 G A LILRB2 5'UTR 0.22 TCGA-ER-A194-01 19 54844928 54844928 C T LILRA4 Missense_Mutation p.R472K 0.17 tolerated(0.09) benign(0.014) TCGA-ER-A194-01 19 54849767 54849767 G A LILRA4 Silent p.I85I 0.28 TCGA-ER-A194-01 19 55106316 55106316 C T LILRA1 Missense_Mutation p.P86L 0.18 tolerated(0.06) benign(0.319) TCGA-ER-A194-01 19 55143222 55143222 G A LILRB1 Silent p.L114L 0.24 TCGA-ER-A194-01 19 55349247 55349247 G A KIR2DS4 Missense_Mutation p.G96E 0.29 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-ER-A194-01 19 55450587 55450587 A G NLRP7 Silent p.L534L 0.18 TCGA-ER-A194-01 19 55451818 55451818 C T NLRP7 Nonsense_Mutation p.W123* 0.28 TCGA-ER-A194-01 19 55526073 55526073 C T GP6 Missense_Mutation p.D414N 0.32 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-ER-A194-01 19 56300662 56300662 C T NLRP11 Missense_Mutation p.E873K 0.28 tolerated(0.17) benign(0.038) TCGA-ER-A194-01 19 56465911 56465911 C T NLRP8 Missense_Mutation p.P163S 0.31 tolerated(0.64) benign(0.095) TCGA-ER-A194-01 19 56466945 56466945 C T NLRP8 Silent p.L507L 0.24 TCGA-ER-A194-01 19 56735033 56735033 G A ZSCAN5A Silent p.I185I 0.28 TCGA-ER-A194-01 19 57132728 57132728 C T ZNF71 Missense_Mutation p.P25S 0.25 tolerated(0.28) benign(0.094) TCGA-ER-A194-01 19 5751693 5751693 C T CATSPERD Silent p.A341A 0.35 TCGA-ER-A194-01 19 57646636 57646636 G A ZIM3 Missense_Mutation p.H357Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-ER-A194-01 19 5768206 5768206 C T CATSPERD Silent p.I529I 0.30 TCGA-ER-A194-01 19 5786495 5786495 G A DUS3L Silent p.T515T 0.23 TCGA-ER-A194-01 19 58003535 58003535 C T ZNF419 Missense_Mutation p.P86L 0.19 tolerated(0.06) probably_damaging(0.994) TCGA-ER-A194-01 19 58003536 58003536 C T ZNF419 Silent p.P86P 0.19 TCGA-ER-A194-01 19 58806109 58806109 C T ZNF8 Missense_Mutation p.P312L 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 19 58946388 58946388 G A ZNF132 Silent p.P141P 0.31 TCGA-ER-A194-01 19 6147677 6147677 C T ACSBG2 Silent p.S96S 0.29 TCGA-ER-A194-01 19 6681967 6681967 G A C3 Silent p.I1445I 0.32 TCGA-ER-A194-01 19 6690717 6690717 C T C3 Missense_Mutation p.E1138K 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-ER-A194-01 19 6694466 6694466 C T C3 Missense_Mutation p.G1044R 0.30 tolerated(0.1) benign(0.009) TCGA-ER-A194-01 19 7267773 7267773 G A INSR Missense_Mutation p.P79S 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 19 8140033 8140033 A T FBN3 Missense_Mutation p.C2542S 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-ER-A194-01 19 8953520 8953520 G A MBD3L1 Missense_Mutation p.E56K 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A194-01 19 9010664 9010664 G A MUC16 Silent p.S12999S 0.20 TCGA-ER-A194-01 19 9057220 9057220 G A MUC16 Silent p.L10076L 0.33 TCGA-ER-A194-01 19 9058301 9058301 C T MUC16 Nonsense_Mutation p.W9715* 0.31 TCGA-ER-A194-01 19 9065535 9065535 G A MUC16 Missense_Mutation p.S7304F 0.34 unknown(0) TCGA-ER-A194-01 19 9066247 9066247 G A MUC16 Missense_Mutation p.P7067S 0.28 unknown(0) TCGA-ER-A194-01 19 9068965 9068965 G A MUC16 Missense_Mutation p.P6161S 0.23 unknown(0) TCGA-ER-A194-01 19 9077142 9077142 C T MUC16 Missense_Mutation p.G3435E 0.33 unknown(0) TCGA-ER-A194-01 19 9082369 9082369 G A MUC16 Missense_Mutation p.S3149L 0.40 unknown(0) TCGA-ER-A194-01 19 9084542 9084542 C T MUC16 Missense_Mutation p.A2425T 0.29 unknown(0) TCGA-ER-A194-01 19 9204043 9204043 G A OR1M1 Silent p.G41G 0.25 TCGA-ER-A194-01 19 9225612 9225612 C T OR7G1 Silent p.V276V 0.32 TCGA-ER-A194-01 19 9325243 9325243 C T OR7D4 Missense_Mutation p.D91N 0.32 tolerated(0.52) benign(0.003) TCGA-ER-A194-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.31 tolerated(0.43) possibly_damaging(0.602) TCGA-ER-A194-01 1 100154805 100154805 G A PALMD Missense_Mutation p.R330Q 0.16 tolerated(0.53) possibly_damaging(0.883) TCGA-ER-A194-01 1 10240011 10240011 C G UBE4B Missense_Mutation p.H1302Q 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-ER-A194-01 1 10713789 10713789 C T CASZ1 Silent p.L775L 0.31 TCGA-ER-A194-01 1 107867198 107867198 G A NTNG1 Missense_Mutation p.D181N 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 109273436 109273436 C T FNDC7 Nonsense_Mutation p.Q589* 0.22 TCGA-ER-A194-01 1 109342872 109342872 G A STXBP3 Missense_Mutation p.E494K 0.28 tolerated(0.3) benign(0.422) TCGA-ER-A194-01 1 109731695 109731695 C T KIAA1324 Silent p.T409T 0.20 TCGA-ER-A194-01 1 110022187 110022187 C T SYPL2 3'UTR 0.23 TCGA-ER-A194-01 1 111730153 111730153 G A DENND2D 3'UTR 0.29 TCGA-ER-A194-01 1 112270049 112270049 C T FAM212B Silent p.L145L 0.33 TCGA-ER-A194-01 1 115142865 115142865 G A DENND2C Missense_Mutation p.L689F 0.18 deleterious(0.02) probably_damaging(1) TCGA-ER-A194-01 1 117086949 117086949 G A CD58 Silent p.F116F 0.26 TCGA-ER-A194-01 1 118042153 118042153 C T MAN1A2 Nonsense_Mutation p.Q552* 0.22 TCGA-ER-A194-01 1 118486107 118486107 C T WDR3 Missense_Mutation p.P396S 0.28 tolerated(0.43) benign(0.002) TCGA-ER-A194-01 1 118523964 118523964 G A SPAG17 Missense_Mutation p.P1978L 0.31 tolerated(0.8) benign(0.008) TCGA-ER-A194-01 1 118533514 118533514 C T SPAG17 Missense_Mutation p.E1831K 0.26 deleterious(0.03) probably_damaging(0.981) TCGA-ER-A194-01 1 11982654 11982654 G A KIAA2013 Intron 0.30 TCGA-ER-A194-01 1 119927557 119927557 C T HAO2 Silent p.L148L 0.29 TCGA-ER-A194-01 1 120293494 120293494 G A HMGCS2 Silent p.F486F 0.30 TCGA-ER-A194-01 1 12907852 12907852 C T HNRNPCL1 Silent p.V97V 0.08 TCGA-ER-A194-01 1 13695723 13695723 G A PRAMEF19 Silent p.A414A 0.15 TCGA-ER-A194-01 1 13936951 13936951 C T PDPN Missense_Mutation p.H167Y 0.19 tolerated(0.18) benign(0.028) TCGA-ER-A194-01 1 13936994 13936994 C T PDPN Missense_Mutation p.A181V 0.12 tolerated(0.49) benign(0.147) TCGA-ER-A194-01 1 145541454 145541454 C T ITGA10 Missense_Mutation p.S1081F 0.25 deleterious(0) possibly_damaging(0.775) TCGA-ER-A194-01 1 145561831 145561831 G A ANKRD35 Missense_Mutation p.D507N 0.25 deleterious(0.01) possibly_damaging(0.539) TCGA-ER-A194-01 1 151110527 151110527 A G SEMA6C Missense_Mutation p.V201A 0.39 deleterious(0) benign(0.294) TCGA-ER-A194-01 1 152058352 152058352 C T TCHHL1 Silent p.E602E 0.30 TCGA-ER-A194-01 1 152328704 152328704 G A FLG2 Nonsense_Mutation p.Q520* 0.30 TCGA-ER-A194-01 1 152732336 152732336 C T KPRP Missense_Mutation p.T91I 0.21 tolerated(0.12) benign(0.295) TCGA-ER-A194-01 1 152732337 152732337 C T KPRP Silent p.T91T 0.23 TCGA-ER-A194-01 1 153177437 153177437 C T LELP1 Missense_Mutation p.S85F 0.23 deleterious_low_confidence(0.04) unknown(0) TCGA-ER-A194-01 1 153658315 153658315 G A NPR1 Missense_Mutation p.E547K 0.21 tolerated(0.55) benign(0.304) TCGA-ER-A194-01 1 153721217 153721217 C T INTS3 Silent p.I190I 0.27 TCGA-ER-A194-01 1 154229858 154229858 C T UBAP2L Missense_Mutation p.P797L 0.33 deleterious(0) unknown(0) TCGA-ER-A194-01 1 15439002 15439002 G A KAZN Missense_Mutation p.E710K 0.40 deleterious_low_confidence(0.04) benign(0.016) TCGA-ER-A194-01 1 154519928 154519928 G A TDRD10 Silent p.G332G 0.32 TCGA-ER-A194-01 1 154942551 154942551 G A SHC1 Missense_Mutation p.P151L 0.22 tolerated(0.05) benign(0.046) TCGA-ER-A194-01 1 155159801 155159801 G A MUC1 Missense_Mutation p.P418L 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-ER-A194-01 1 155159802 155159802 G A MUC1 Missense_Mutation p.P418S 0.25 tolerated(0.05) probably_damaging(0.986) TCGA-ER-A194-01 1 155723145 155723145 G A GON4L Missense_Mutation p.H1898Y 0.32 tolerated_low_confidence(0.3) benign(0.291) TCGA-ER-A194-01 1 156222867 156222867 G A SMG5 Silent p.L835L 0.31 TCGA-ER-A194-01 1 156351962 156351962 G A RHBG Missense_Mutation p.G361E 0.29 deleterious(0.01) benign(0.309) TCGA-ER-A194-01 1 156812213 156812213 G A INSRR Nonsense_Mutation p.R1072* 0.27 TCGA-ER-A194-01 1 156882111 156882111 C T PEAR1 Missense_Mutation p.P675L 0.26 deleterious(0.01) possibly_damaging(0.873) TCGA-ER-A194-01 1 158369215 158369215 G A OR10T2 Silent p.I14I 0.26 TCGA-ER-A194-01 1 158435818 158435818 C T OR10K1 Missense_Mutation p.S156F 0.25 deleterious(0) probably_damaging(0.932) TCGA-ER-A194-01 1 158632730 158632730 C T SPTA1 Silent p.Q742Q 0.25 TCGA-ER-A194-01 1 158813856 158813856 C T MNDA Missense_Mutation p.H172Y 0.21 tolerated(0.44) benign(0.014) TCGA-ER-A194-01 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.33 tolerated(1) benign(0) TCGA-ER-A194-01 1 159170689 159170689 G A CADM3 Missense_Mutation p.D426N 0.21 deleterious(0.01) possibly_damaging(0.744) TCGA-ER-A194-01 1 159175432 159175432 C T DARC Missense_Mutation p.T70I 0.25 tolerated(0.24) benign(0.001) TCGA-ER-A194-01 1 159284281 159284281 G A OR10J3 Missense_Mutation p.H57Y 0.31 deleterious(0.01) benign(0.216) TCGA-ER-A194-01 1 159409623 159409623 C T OR10J1 Silent p.F25F 0.20 TCGA-ER-A194-01 1 159856450 159856450 G A CCDC19 Silent p.I206I 0.31 TCGA-ER-A194-01 1 160011505 160011505 C T KCNJ10 Missense_Mutation p.G273D 0.31 tolerated(0.62) possibly_damaging(0.76) TCGA-ER-A194-01 1 160259863 160259863 G A COPA 3'UTR 0.28 TCGA-ER-A194-01 1 161284186 161284186 G A SDHC 5'UTR 0.24 TCGA-ER-A194-01 1 161495658 161495658 G A HSPA6 Missense_Mutation p.G404R 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A194-01 1 161495659 161495659 G A HSPA6 Missense_Mutation p.G404E 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A194-01 1 162325116 162325116 G A NOS1AP Silent p.K245K 0.21 TCGA-ER-A194-01 1 162325117 162325117 G A NOS1AP Missense_Mutation p.E246K 0.21 tolerated(0.33) benign(0.004) TCGA-ER-A194-01 1 16268433 16268433 C T ZBTB17 3'UTR 0.13 TCGA-ER-A194-01 1 16727338 16727338 C T SPATA21 Missense_Mutation p.E351K 0.28 tolerated(0.12) benign(0.078) TCGA-ER-A194-01 1 167663498 167663498 G A RCSD1 Missense_Mutation p.D145N 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 1688256 1688256 G A NADK Intron 0.20 TCGA-ER-A194-01 1 16945591 16945591 G A RP5-1182A14.5 3'Flank 0.06 TCGA-ER-A194-01 1 169511350 169511350 C T F5 Missense_Mutation p.G993E 0.29 tolerated_low_confidence(0.06) benign(0.316) TCGA-ER-A194-01 1 169519969 169519969 G T F5 Missense_Mutation p.F435L 0.26 deleterious(0.02) benign(0.416) TCGA-ER-A194-01 1 171236837 171236837 C T FMO1 Silent p.N96N 0.17 TCGA-ER-A194-01 1 171605745 171605745 G A MYOC Missense_Mutation p.P279S 0.31 deleterious(0) probably_damaging(0.986) TCGA-ER-A194-01 1 17265526 17265526 C T CROCC Silent p.S499S 0.33 TCGA-ER-A194-01 1 175332903 175332903 G A TNR Missense_Mutation p.S883F 0.33 tolerated(0.67) benign(0.033) TCGA-ER-A194-01 1 177247797 177247797 C T BRINP2 Missense_Mutation p.R371C 0.27 tolerated(0.05) probably_damaging(0.996) TCGA-ER-A194-01 1 179526234 179526234 C T NPHS2 Missense_Mutation p.M222I 0.25 tolerated(0.25) benign(0.257) TCGA-ER-A194-01 1 181687219 181687219 C T CACNA1E Silent p.L518L 0.28 TCGA-ER-A194-01 1 186277347 186277347 G A PRG4 Silent p.K832K 0.27 TCGA-ER-A194-01 1 186277348 186277348 G A PRG4 Missense_Mutation p.E833K 0.27 unknown(0) TCGA-ER-A194-01 1 186304547 186304547 G A TPR Missense_Mutation p.R1612C 0.31 possibly_damaging(0.689) TCGA-ER-A194-01 1 186645824 186645824 G A PTGS2 Missense_Mutation p.P249S 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 18692116 18692116 G A IGSF21 Missense_Mutation p.D314N 0.26 deleterious(0.04) possibly_damaging(0.814) TCGA-ER-A194-01 1 18808204 18808204 C T KLHDC7A Silent p.S243S 0.23 TCGA-ER-A194-01 1 190067360 190067360 C T BRINP3 Missense_Mutation p.D697N 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A194-01 1 190203543 190203543 G A BRINP3 Missense_Mutation p.S228F 0.30 deleterious(0) probably_damaging(0.994) TCGA-ER-A194-01 1 197073314 197073314 A G ASPM Silent p.V1689V 0.20 TCGA-ER-A194-01 1 197111966 197111966 A T ASPM Missense_Mutation p.F472L 0.32 tolerated(0.22) benign(0.002) TCGA-ER-A194-01 1 197704732 197704732 G A DENND1B Intron 0.25 TCGA-ER-A194-01 1 200978531 200978531 C T KIF21B Missense_Mutation p.G43R 0.17 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 1 201356074 201356074 C T LAD1 Missense_Mutation p.E139K 0.17 tolerated(0.33) benign(0.14) TCGA-ER-A194-01 1 201383661 201383661 G A TNNI1 Silent p.S58S 0.12 TCGA-ER-A194-01 1 201398282 201398282 G A RP11-134G8.2 RNA 0.31 TCGA-ER-A194-01 1 202287465 202287465 G A LGR6 Silent p.G678G 0.37 TCGA-ER-A194-01 1 203192781 203192781 C T CHIT1 Missense_Mutation p.D108N 0.19 tolerated(0.52) benign(0.009) TCGA-ER-A194-01 1 204216589 204216589 C T PLEKHA6 Splice_Site p.X609_splice 0.24 TCGA-ER-A194-01 1 204218034 204218034 G A PLEKHA6 Missense_Mutation p.A580V 0.32 deleterious(0.05) benign(0.119) TCGA-ER-A194-01 1 204375261 204375261 C T PPP1R15B Missense_Mutation p.G701R 0.23 tolerated(0.16) benign(0.002) TCGA-ER-A194-01 1 205273110 205273110 G A NUAK2 Missense_Mutation p.P452L 0.12 tolerated(0.3) benign(0.075) TCGA-ER-A194-01 1 206230863 206230863 C T AVPR1B Silent p.C332C 0.15 TCGA-ER-A194-01 1 206650147 206650147 C T IKBKE Missense_Mutation p.P223S 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 206651675 206651675 C T IKBKE Missense_Mutation p.H329Y 0.23 tolerated(1) benign(0.008) TCGA-ER-A194-01 1 206821727 206821727 T C DYRK3 Missense_Mutation p.F395S 0.27 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 1 207105085 207105085 C T PIGR Missense_Mutation p.E691K 0.22 tolerated(0.07) benign(0.018) TCGA-ER-A194-01 1 207639965 207639965 T C CR2 Silent p.C51C 0.30 TCGA-ER-A194-01 1 209785353 209785353 G A CAMK1G Missense_Mutation p.G378S 0.27 tolerated_low_confidence(0.77) benign(0.001) TCGA-ER-A194-01 1 209961745 209961745 G A IRF6 3'UTR 0.44 TCGA-ER-A194-01 1 214805901 214805901 C T CENPF Nonsense_Mutation p.Q468* 0.34 TCGA-ER-A194-01 1 215259976 215259976 C T KCNK2 Silent p.S104S 0.21 TCGA-ER-A194-01 1 215914757 215914757 C T USH2A Missense_Mutation p.E3891K 0.23 benign(0) TCGA-ER-A194-01 1 216251523 216251523 C T USH2A Missense_Mutation p.G1827E 0.24 benign(0.008) TCGA-ER-A194-01 1 21804670 21804670 C T NBPF3 Silent p.P342P 0.24 TCGA-ER-A194-01 1 21928203 21928203 G A RAP1GAP Silent p.S606S 0.22 TCGA-ER-A194-01 1 220160504 220160504 C T EPRS Silent p.Q1006Q 0.18 TCGA-ER-A194-01 1 220971238 220971238 C T MARC1 Missense_Mutation p.P212L 0.19 deleterious(0) probably_damaging(0.994) TCGA-ER-A194-01 1 223284087 223284087 G A TLR5 Missense_Mutation p.L763F 0.30 deleterious(0) probably_damaging(0.982) TCGA-ER-A194-01 1 223396630 223396630 C T SUSD4 Missense_Mutation p.E469K 0.29 deleterious(0.01) possibly_damaging(0.64) TCGA-ER-A194-01 1 223441931 223441931 C T SUSD4 Missense_Mutation p.G150R 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 2237522 2237522 A G SKI Missense_Mutation p.N611D 0.35 tolerated(0.07) benign(0.075) TCGA-ER-A194-01 1 22412947 22412947 A T CDC42 Missense_Mutation p.D65V 0.19 deleterious(0.01) benign(0.428) TCGA-ER-A194-01 1 2255563 2255563 C T MORN1 Missense_Mutation p.E424K 0.33 tolerated(0.86) benign(0.005) TCGA-ER-A194-01 1 2268246 2268246 C T MORN1 Silent p.V360V 0.41 TCGA-ER-A194-01 1 228495064 228495064 G A OBSCN Missense_Mutation p.V5057M 0.37 probably_damaging(0.943) TCGA-ER-A194-01 1 228521296 228521296 C T OBSCN Missense_Mutation p.P6247L 0.30 benign(0.351) TCGA-ER-A194-01 1 228548271 228548271 C T OBSCN Intron 0.29 TCGA-ER-A194-01 1 230841908 230841908 C T AGT Missense_Mutation p.E299K 0.25 tolerated(0.06) benign(0.092) TCGA-ER-A194-01 1 233394789 233394789 G A PCNXL2 Silent p.F273F 0.32 TCGA-ER-A194-01 1 233490611 233490611 C T MLK4 Missense_Mutation p.P389S 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 234041378 234041378 G A SLC35F3 Missense_Mutation p.D53N 0.20 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-ER-A194-01 1 240070953 240070953 G A CHRM3 Missense_Mutation p.V68M 0.16 deleterious(0.01) benign(0.404) TCGA-ER-A194-01 1 240070954 240070954 T A CHRM3 Missense_Mutation p.V68E 0.17 deleterious(0) possibly_damaging(0.611) TCGA-ER-A194-01 1 240071803 240071803 C T CHRM3 Missense_Mutation p.S351F 0.36 deleterious(0) possibly_damaging(0.905) TCGA-ER-A194-01 1 2421251 2421251 C T PLCH2 Missense_Mutation p.S460F 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 2428367 2428367 C T PLCH2 Silent p.L651L 0.30 TCGA-ER-A194-01 1 24417382 24417382 C T MYOM3 Missense_Mutation p.R446Q 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 1 247588023 247588023 G A NLRP3 Missense_Mutation p.M426I 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-ER-A194-01 1 247726896 247726896 G A GCSAML Missense_Mutation p.E32K 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-ER-A194-01 1 247835945 247835945 C T OR13G1 Missense_Mutation p.M133I 0.38 deleterious(0.02) probably_damaging(0.968) TCGA-ER-A194-01 1 247875558 247875558 G A OR6F1 Missense_Mutation p.S167F 0.31 deleterious(0.04) benign(0.062) TCGA-ER-A194-01 1 247875727 247875727 C T OR6F1 Missense_Mutation p.E111K 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 1 248004661 248004661 C T OR11L1 Missense_Mutation p.D180N 0.23 deleterious(0) probably_damaging(0.979) TCGA-ER-A194-01 1 248039443 248039443 G A TRIM58 Silent p.G371G 0.33 TCGA-ER-A194-01 1 248084835 248084835 C T OR2T8 Silent p.I172I 0.26 TCGA-ER-A194-01 1 248224085 248224085 C T OR2L3 Silent p.F34F 0.26 TCGA-ER-A194-01 1 248263565 248263565 C T OR2L13 Silent p.V296V 0.24 TCGA-ER-A194-01 1 248403001 248403001 C T OR2M4 Silent p.F257F 0.38 TCGA-ER-A194-01 1 248458617 248458617 C T OR2T12 Silent p.K88K 0.08 TCGA-ER-A194-01 1 248636788 248636788 G A OR2T3 Missense_Mutation p.G46E 0.19 deleterious(0.02) possibly_damaging(0.655) TCGA-ER-A194-01 1 249211135 249211135 C T PGBD2 Missense_Mutation p.R118C 0.22 tolerated(0.09) benign(0.003) TCGA-ER-A194-01 1 26369133 26369133 C T SLC30A2 Silent p.E213E 0.27 TCGA-ER-A194-01 1 26570684 26570684 C T CEP85 Missense_Mutation p.S28F 0.29 tolerated(0.9) benign(0.005) TCGA-ER-A194-01 1 27087554 27087554 C T ARID1A Missense_Mutation p.R710C 0.26 unknown(0) TCGA-ER-A194-01 1 27089649 27089649 G A ARID1A Missense_Mutation p.G869S 0.31 unknown(0) TCGA-ER-A194-01 1 28343697 28343697 G A EYA3 Missense_Mutation p.P185S 0.32 tolerated(0.73) benign(0.006) TCGA-ER-A194-01 1 28477170 28477170 C T PTAFR Silent p.R121R 0.27 TCGA-ER-A194-01 1 32687979 32687979 G A EIF3I 5'UTR 0.32 TCGA-ER-A194-01 1 34011640 34011640 C T CSMD2 Missense_Mutation p.G2889R 0.26 tolerated(0.46) benign(0.002) TCGA-ER-A194-01 1 34258094 34258094 C T CSMD2 Missense_Mutation p.E454K 0.36 deleterious(0.03) probably_damaging(0.968) TCGA-ER-A194-01 1 34684302 34684302 C T C1orf94 Silent p.S579S 0.24 TCGA-ER-A194-01 1 35853076 35853076 G A ZMYM4 Missense_Mutation p.G712S 0.23 tolerated(0.55) possibly_damaging(0.812) TCGA-ER-A194-01 1 36030881 36030881 C T NCDN Silent p.L603L 0.22 TCGA-ER-A194-01 1 40879859 40879859 C A SMAP2 Missense_Mutation p.P173H 0.19 tolerated(0.07) benign(0.36) TCGA-ER-A194-01 1 41300651 41300651 C T KCNQ4 Silent p.F542F 0.22 TCGA-ER-A194-01 1 42050216 42050216 G T HIVEP3 Missense_Mutation p.P85T 0.26 benign(0.001) TCGA-ER-A194-01 1 43652381 43652381 C T WDR65 Missense_Mutation p.P325S 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A194-01 1 43773150 43773150 G A TIE1 Missense_Mutation p.G274S 0.35 tolerated(0.77) benign(0.009) TCGA-ER-A194-01 1 45267366 45267366 C T PLK3 Missense_Mutation p.L170F 0.26 deleterious(0) possibly_damaging(0.88) TCGA-ER-A194-01 1 45963020 45963020 C T CCDC163P Silent p.E71E 0.20 TCGA-ER-A194-01 1 46521614 46521614 G A PIK3R3 Missense_Mutation p.S265L 0.18 deleterious(0.05) probably_damaging(0.965) TCGA-ER-A194-01 1 47075344 47075344 C T MOB3C Missense_Mutation p.E264K 0.31 tolerated(0.13) benign(0.022) TCGA-ER-A194-01 1 47333708 47333708 G A CYP4Z2P RNA 0.25 TCGA-ER-A194-01 1 51760091 51760091 T C TTC39A Missense_Mutation p.N417S 0.40 tolerated(0.46) benign(0.009) TCGA-ER-A194-01 1 54483769 54483769 G A LDLRAD1 Missense_Mutation p.P6L 0.22 deleterious(0.02) benign(0.131) TCGA-ER-A194-01 1 55474167 55474167 G A BSND Missense_Mutation p.E277K 0.33 tolerated(0.07) possibly_damaging(0.779) TCGA-ER-A194-01 1 57285016 57285016 G A C1orf168 5'UTR 0.24 TCGA-ER-A194-01 1 57406671 57406671 C T C8B Missense_Mutation p.D417N 0.29 tolerated(0.48) benign(0.001) TCGA-ER-A194-01 1 6100607 6100607 C T AL035406.1 3'Flank 0.26 TCGA-ER-A194-01 1 6188931 6188931 C T CHD5 Missense_Mutation p.G1196S 0.22 deleterious(0) probably_damaging(0.945) TCGA-ER-A194-01 1 62675968 62675968 G A L1TD1 Missense_Mutation p.E508K 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-ER-A194-01 1 65119559 65119559 C T CACHD1 Silent p.I502I 0.20 TCGA-ER-A194-01 1 65871640 65871640 C T DNAJC6 Missense_Mutation p.P772L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A194-01 1 67390495 67390495 G A WDR78 Missense_Mutation p.S7F 0.36 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-ER-A194-01 1 67424654 67424654 T G MIER1 Missense_Mutation p.Y208D 0.26 tolerated(0.16) probably_damaging(0.991) TCGA-ER-A194-01 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.28 TCGA-ER-A194-01 1 7724953 7724953 C T CAMTA1 Silent p.S782S 0.34 TCGA-ER-A194-01 1 82408771 82408771 C T LPHN2 Silent p.F172F 0.32 TCGA-ER-A194-01 1 82416724 82416724 G A LPHN2 Missense_Mutation p.M505I 0.35 tolerated(0.13) benign(0.001) TCGA-ER-A194-01 1 86948026 86948026 G A CLCA1 Silent p.T232T 0.30 TCGA-ER-A194-01 1 90401139 90401139 C T LRRC8D Silent p.L838L 0.29 TCGA-ER-A194-01 1 91784718 91784718 A G HFM1 Missense_Mutation p.L910S 0.27 deleterious(0) probably_damaging(0.995) TCGA-ER-A194-01 1 94502326 94502326 C T ABCA4 Missense_Mutation p.E1278K 0.28 deleterious(0.03) benign(0.066) TCGA-ER-A194-01 1 94546218 94546218 C T ABCA4 Silent p.Q305Q 0.27 TCGA-ER-A194-01 1 95005851 95005851 T C F3 Silent p.E58E 0.34 TCGA-ER-A194-01 1 9661428 9661428 C T TMEM201 Missense_Mutation p.A291V 0.29 tolerated(0.11) benign(0.356) TCGA-ER-A194-01 1 978980 978980 C T AGRN Missense_Mutation p.P556S 0.25 deleterious(0.01) benign(0.001) TCGA-ER-A194-01 20 1963686 1963686 G A PDYN Silent p.F15F 0.33 TCGA-ER-A194-01 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.33 deleterious_low_confidence(0) benign(0.022) TCGA-ER-A194-01 20 2381031 2381031 G A TGM6 Silent p.V310V 0.27 TCGA-ER-A194-01 20 25457321 25457321 G A NINL Missense_Mutation p.S869F 0.56 tolerated(0.12) benign(0.175) TCGA-ER-A194-01 20 30733200 30733200 C T TM9SF4 Missense_Mutation p.S286F 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 20 33874486 33874486 C T FAM83C Missense_Mutation p.G699E 0.18 deleterious_low_confidence(0) benign(0.015) TCGA-ER-A194-01 20 34022575 34022575 C T GDF5 Missense_Mutation p.R213Q 0.21 tolerated(0.41) possibly_damaging(0.857) TCGA-ER-A194-01 20 34129791 34129791 G A ERGIC3 5'UTR 0.33 TCGA-ER-A194-01 20 34451086 34451086 C T PHF20 Missense_Mutation p.P191L 0.41 tolerated(0.32) benign(0.005) TCGA-ER-A194-01 20 34797731 34797731 G A EPB41L1 Missense_Mutation p.G664R 0.30 tolerated(0.59) benign(0.001) TCGA-ER-A194-01 20 35434313 35434313 T C SOGA1 Missense_Mutation p.I954M 0.20 tolerated(0.06) benign(0.006) TCGA-ER-A194-01 20 35752064 35752064 G A MROH8 Missense_Mutation p.P669S 0.15 deleterious(0.04) probably_damaging(1) TCGA-ER-A194-01 20 3674323 3674323 G A SIGLEC1 Silent p.P1093P 0.18 TCGA-ER-A194-01 20 36869564 36869564 G A KIAA1755 Silent p.L323L 0.44 TCGA-ER-A194-01 20 40743942 40743942 C T PTPRT Missense_Mutation p.R999Q 0.23 tolerated(0.2) possibly_damaging(0.896) TCGA-ER-A194-01 20 42355105 42355105 G A GTSF1L Missense_Mutation p.P77L 0.43 tolerated(0.07) benign(0.059) TCGA-ER-A194-01 20 42893196 42893196 G A GDAP1L1 Missense_Mutation p.E253K 0.47 tolerated(0.39) benign(0.104) TCGA-ER-A194-01 20 44333576 44333576 C T WFDC10B Missense_Mutation p.D19N 0.44 tolerated_low_confidence(0.32) unknown(0) TCGA-ER-A194-01 20 44523740 44523740 C T CTSA Silent p.I370I 0.30 TCGA-ER-A194-01 20 45239121 45239121 G A SLC13A3 Nonsense_Mutation p.R169* 0.44 TCGA-ER-A194-01 20 45700845 45700845 G A EYA2 Missense_Mutation p.G146E 0.53 deleterious(0.04) benign(0.22) TCGA-ER-A194-01 20 47582484 47582484 C T ARFGEF2 Missense_Mutation p.P328L 0.52 tolerated(0.11) benign(0) TCGA-ER-A194-01 20 47648602 47648602 C T ARFGEF2 Missense_Mutation p.L1694F 0.20 tolerated(0.09) benign(0.144) TCGA-ER-A194-01 20 47990575 47990575 C T KCNB1 Missense_Mutation p.E508K 0.39 tolerated_low_confidence(0.61) possibly_damaging(0.597) TCGA-ER-A194-01 20 5294948 5294948 G A PROKR2 Missense_Mutation p.S23F 0.48 tolerated(0.2) benign(0.001) TCGA-ER-A194-01 20 54575842 54575842 C T CBLN4 Missense_Mutation p.G118E 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 20 56735914 56735914 C T C20orf85 3'UTR 0.25 TCGA-ER-A194-01 20 57428497 57428497 C T GNAS Silent p.I59I 0.27 TCGA-ER-A194-01 20 5903853 5903853 G A CHGB Missense_Mutation p.E355K 0.50 tolerated(0.16) benign(0.006) TCGA-ER-A194-01 20 62198490 62198490 C T HELZ2 Missense_Mutation p.E741K 0.18 tolerated(0.1) possibly_damaging(0.587) TCGA-ER-A194-01 20 8113395 8113395 G A PLCB1 Missense_Mutation p.D33N 0.30 deleterious(0) benign(0.306) TCGA-ER-A194-01 20 8637857 8637857 C T PLCB1 Silent p.F207F 0.43 TCGA-ER-A194-01 20 9453439 9453439 G A PLCB4 Missense_Mutation p.R1106Q 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A194-01 21 10906855 10906855 G A TPTE 3'UTR 0.10 TCGA-ER-A194-01 21 11039421 11039421 C T BAGE2 RNA 0.05 TCGA-ER-A194-01 21 11058251 11058251 A T BAGE2 RNA 0.10 TCGA-ER-A194-01 21 22910226 22910226 T - NCAM2 Frame_Shift_Del p.V823Ffs*23 0.18 TCGA-ER-A194-01 21 31874201 31874201 C T KRTAP19-5 Missense_Mutation p.G70R 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A194-01 21 33867346 33867346 C T EVA1C Missense_Mutation p.S215F 0.25 deleterious(0) possibly_damaging(0.892) TCGA-ER-A194-01 21 38558073 38558073 C T TTC3 Silent p.I1608I 0.33 TCGA-ER-A194-01 21 42769547 42769547 C T MX2 Silent p.L360L 0.28 TCGA-ER-A194-01 21 43809050 43809050 C T TMPRSS3 Missense_Mutation p.E104K 0.28 deleterious(0) probably_damaging(0.968) TCGA-ER-A194-01 21 44441534 44441534 A C PKNOX1 Missense_Mutation p.H281P 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 21 45668927 45668927 T C DNMT3L Missense_Mutation p.N326S 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A194-01 21 45815369 45815369 C T TRPM2 Missense_Mutation p.R623C 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 21 45993649 45993649 C T KRTAP10-4 Missense_Mutation p.S5F 0.35 deleterious(0) probably_damaging(0.991) TCGA-ER-A194-01 21 45993650 45993650 C T KRTAP10-4 Silent p.S5S 0.34 TCGA-ER-A194-01 21 47407554 47407554 G A COL6A1 Missense_Mutation p.D264N 0.42 deleterious(0.01) unknown(0) TCGA-ER-A194-01 22 21982815 21982815 C T YDJC Silent p.Q288Q 0.20 TCGA-ER-A194-01 22 22025287 22025287 C G PPIL2 Missense_Mutation p.L44V 0.18 tolerated(0.05) benign(0.329) TCGA-ER-A194-01 22 23135302 23135302 C T IGLV2-11 Missense_Mutation p.S55F 0.27 deleterious_low_confidence(0.01) benign(0.312) TCGA-ER-A194-01 22 24483528 24483528 C T CABIN1 Silent p.F1129F 0.28 TCGA-ER-A194-01 22 26173736 26173736 G A MYO18B Missense_Mutation p.G686S 0.30 tolerated(0.1) benign(0.331) TCGA-ER-A194-01 22 26422615 26422615 C T MYO18B Silent p.S2225S 0.21 TCGA-ER-A194-01 22 29454796 29454796 C T C22orf31 Silent p.R269R 0.32 TCGA-ER-A194-01 22 29881793 29881793 C A NEFH Missense_Mutation p.L389I 0.31 deleterious(0) unknown(0) TCGA-ER-A194-01 22 30127056 30127056 G A ZMAT5 3'UTR 0.43 TCGA-ER-A194-01 22 30127057 30127057 G A ZMAT5 3'UTR 0.45 TCGA-ER-A194-01 22 30682915 30682915 G A GATSL3 Silent p.P176P 0.27 TCGA-ER-A194-01 22 31533873 31533873 G A PLA2G3 Missense_Mutation p.P297S 0.24 tolerated(0.29) benign(0.021) TCGA-ER-A194-01 22 36123222 36123222 C T APOL5 Silent p.S369S 0.18 TCGA-ER-A194-01 22 37397962 37397962 C T TEX33 Silent p.T135T 0.19 TCGA-ER-A194-01 22 37678577 37678577 G A CYTH4 5'UTR 0.30 TCGA-ER-A194-01 22 39064102 39064102 C T CBY1 Missense_Mutation p.P15S 0.28 tolerated(0.16) benign(0.109) TCGA-ER-A194-01 22 39067154 39067154 C T CBY1 Silent p.N88N 0.23 TCGA-ER-A194-01 22 39497401 39497401 C T APOBEC3H Silent p.L104L 0.32 TCGA-ER-A194-01 22 40283720 40283720 C T ENTHD1 Silent p.V11V 0.18 TCGA-ER-A194-01 22 42180389 42180389 T A MEI1 Missense_Mutation p.L1045H 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 22 42418267 42418267 C T WBP2NL Missense_Mutation p.P141S 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 22 43607014 43607014 G A SCUBE1 Missense_Mutation p.P766L 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-ER-A194-01 22 45691514 45691514 G A UPK3A Missense_Mutation p.G260R 0.18 deleterious(0) probably_damaging(0.976) TCGA-ER-A194-01 22 50716104 50716104 G A PLXNB2 Silent p.V1704V 0.19 TCGA-ER-A194-01 22 50878455 50878455 G A PPP6R2 Missense_Mutation p.R758Q 0.16 tolerated(0.71) benign(0.004) TCGA-ER-A194-01 22 50878456 50878456 G A PPP6R2 Silent p.R758R 0.17 TCGA-ER-A194-01 2 103236447 103236447 C T SLC9A2 Missense_Mutation p.S47F 0.30 deleterious(0.03) benign(0.08) TCGA-ER-A194-01 2 109381898 109381898 C T RANBP2 Nonsense_Mutation p.Q1635* 0.24 TCGA-ER-A194-01 2 113590346 113590346 C T IL1B Missense_Mutation p.R120Q 0.52 tolerated(0.5) benign(0.001) TCGA-ER-A194-01 2 114257041 114257041 C T FOXD4L1 Missense_Mutation p.P70S 0.69 tolerated(0.15) benign(0.014) TCGA-ER-A194-01 2 124979306 124979306 C T CNTNAP5 Missense_Mutation p.S36F 0.67 deleterious(0.01) benign(0.01) TCGA-ER-A194-01 2 131521388 131521388 G A AMER3 Silent p.E581E 0.20 TCGA-ER-A194-01 2 131704165 131704165 G A ARHGEF4 Silent p.T128T 0.57 TCGA-ER-A194-01 2 131704166 131704166 G A ARHGEF4 Missense_Mutation p.G129R 0.57 deleterious(0) probably_damaging(0.972) TCGA-ER-A194-01 2 131976434 131976434 C T POTEE Silent p.P153P 0.68 TCGA-ER-A194-01 2 132021894 132021894 C T POTEE Missense_Mutation p.R956C 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.609) TCGA-ER-A194-01 2 133542042 133542042 G A NCKAP5 Missense_Mutation p.S781L 0.50 deleterious(0.02) benign(0.031) TCGA-ER-A194-01 2 133542946 133542946 C T NCKAP5 Missense_Mutation p.D480N 0.60 deleterious(0) possibly_damaging(0.495) TCGA-ER-A194-01 2 136562369 136562369 C T LCT Missense_Mutation p.D1478N 0.41 tolerated(0.22) benign(0.048) TCGA-ER-A194-01 2 136567182 136567182 G A LCT Missense_Mutation p.S912F 0.59 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 2 140992397 140992397 G A LRP1B Silent p.P4539P 0.28 TCGA-ER-A194-01 2 141115615 141115615 A G LRP1B Silent p.P3776P 0.27 TCGA-ER-A194-01 2 141215202 141215202 G A LRP1B Missense_Mutation p.P3215L 0.24 possibly_damaging(0.713) TCGA-ER-A194-01 2 141267566 141267566 G A LRP1B Nonsense_Mutation p.R2777* 0.49 TCGA-ER-A194-01 2 15330430 15330430 A G NBAS Missense_Mutation p.V2177A 0.24 tolerated(0.57) benign(0.002) TCGA-ER-A194-01 2 155098652 155098652 C T GALNT13 Missense_Mutation p.R141C 0.57 deleterious(0) possibly_damaging(0.612) TCGA-ER-A194-01 2 155102446 155102446 C T GALNT13 Missense_Mutation p.P270S 0.67 tolerated(0.08) possibly_damaging(0.876) TCGA-ER-A194-01 2 158655957 158655957 G A ACVR1 Missense_Mutation p.P17S 0.57 tolerated_low_confidence(0.28) benign(0.001) TCGA-ER-A194-01 2 160732139 160732139 C T LY75-CD302 Missense_Mutation p.C597Y 0.61 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A194-01 2 163228391 163228391 C T KCNH7 Missense_Mutation p.G1180E 0.60 tolerated_low_confidence(1) benign(0.421) TCGA-ER-A194-01 2 1652992 1652992 C T PXDN Missense_Mutation p.D854N 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-ER-A194-01 2 165349512 165349512 C T GRB14 3'UTR 0.60 TCGA-ER-A194-01 2 167160751 167160751 G A SCN9A Missense_Mutation p.P229S 0.38 tolerated(0.12) probably_damaging(0.986) TCGA-ER-A194-01 2 168100929 168100929 C T XIRP2 Silent p.I1009I 0.58 TCGA-ER-A194-01 2 17846707 17846707 G T SMC6 3'UTR 0.56 TCGA-ER-A194-01 2 179445168 179445168 G C TTN Missense_Mutation p.T22313S 0.17 TCGA-ER-A194-01 2 179481221 179481221 C T TTN Silent p.R16099R 0.50 TCGA-ER-A194-01 2 179549115 179549115 G A TTN Silent p.T10888T 0.46 TCGA-ER-A194-01 2 179552860 179552860 T C TTN Silent p.E10763E 0.59 TCGA-ER-A194-01 2 179610943 179610943 G A TTN Intron 0.42 TCGA-ER-A194-01 2 1805505 1805505 G T MYT1L Missense_Mutation p.S1078Y 0.23 deleterious(0.04) possibly_damaging(0.847) TCGA-ER-A194-01 2 182339713 182339713 A T ITGA4 Nonsense_Mutation p.K116* 0.53 TCGA-ER-A194-01 2 183707222 183707222 C T FRZB Silent p.R192R 0.20 TCGA-ER-A194-01 2 190719194 190719194 C T PMS1 Missense_Mutation p.S399F 0.58 tolerated(0.15) possibly_damaging(0.519) TCGA-ER-A194-01 2 190922080 190922080 C T MSTN Silent p.K344K 0.61 TCGA-ER-A194-01 2 20146266 20146266 G A WDR35 Silent p.S541S 0.30 TCGA-ER-A194-01 2 201499624 201499624 C T AOX1 Missense_Mutation p.P778S 0.69 deleterious(0.02) probably_damaging(1) TCGA-ER-A194-01 2 203560637 203560637 C T FAM117B Missense_Mutation p.S212F 0.71 deleterious(0.03) probably_damaging(0.989) TCGA-ER-A194-01 2 20647857 20647857 C T RHOB 3'UTR 0.31 TCGA-ER-A194-01 2 206659854 206659854 C T NRP2 3'UTR 0.38 TCGA-ER-A194-01 2 207437870 207437870 C T ADAM23 Missense_Mutation p.A563V 0.55 deleterious(0) possibly_damaging(0.481) TCGA-ER-A194-01 2 208994303 208994303 C T CRYGC Silent p.V38V 0.60 TCGA-ER-A194-01 2 21233206 21233206 C T APOB Missense_Mutation p.M2178I 0.22 benign(0.001) TCGA-ER-A194-01 2 21234154 21234154 C T APOB Silent p.V1862V 0.31 TCGA-ER-A194-01 2 21234300 21234300 G A APOB Silent p.L1814L 0.26 TCGA-ER-A194-01 2 21235039 21235039 C T APOB Silent p.E1567E 0.26 TCGA-ER-A194-01 2 217235000 217235000 G A MARCH4 5'UTR 0.43 TCGA-ER-A194-01 2 217279494 217279494 C T SMARCAL1 Missense_Mutation p.R23C 0.57 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 2 219137557 219137557 C T PNKD Intron 0.64 TCGA-ER-A194-01 2 219483456 219483456 C T PLCD4 Silent p.A112A 0.75 TCGA-ER-A194-01 2 219483457 219483457 C T PLCD4 Nonsense_Mutation p.Q113* 0.73 TCGA-ER-A194-01 2 220034609 220034609 G A SLC23A3 Missense_Mutation p.T33I 0.58 deleterious_low_confidence(0.01) benign(0.093) TCGA-ER-A194-01 2 220247898 220247898 G A DNPEP Silent p.A297A 0.55 TCGA-ER-A194-01 2 220247899 220247899 G A DNPEP Missense_Mutation p.A297V 0.56 tolerated(0.09) benign(0.2) TCGA-ER-A194-01 2 220333457 220333457 T C SPEG Silent p.F1100F 0.26 TCGA-ER-A194-01 2 220406443 220406443 G A CHPF Silent p.P261P 0.21 TCGA-ER-A194-01 2 225360656 225360656 C T CUL3 Missense_Mutation p.G579S 0.30 tolerated(0.36) benign(0.006) TCGA-ER-A194-01 2 226516273 226516273 C T NYAP2 Missense_Mutation p.R652C 0.56 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-ER-A194-01 2 231037598 231037598 G A SP110 Silent p.F556F 0.49 TCGA-ER-A194-01 2 231254715 231254715 T A SP140L Nonsense_Mutation p.L314* 0.67 TCGA-ER-A194-01 2 233346276 233346276 G A ECEL1 Silent p.F643F 0.34 TCGA-ER-A194-01 2 233660913 233660913 C T GIGYF2 Missense_Mutation p.P562S 0.30 probably_damaging(0.984) TCGA-ER-A194-01 2 233990499 233990499 C T INPP5D Missense_Mutation p.P132S 0.48 tolerated(0.43) benign(0.076) TCGA-ER-A194-01 2 234072499 234072499 G A INPP5D Missense_Mutation p.E451K 0.58 deleterious(0) possibly_damaging(0.864) TCGA-ER-A194-01 2 234869462 234869462 G C TRPM8 Missense_Mutation p.D469H 0.56 deleterious(0) probably_damaging(0.981) TCGA-ER-A194-01 2 238738022 238738022 G A RBM44 Silent p.S922S 0.59 TCGA-ER-A194-01 2 239140769 239140769 G A AC016757.3 5'Flank 0.47 TCGA-ER-A194-01 2 241689879 241689879 C T KIF1A Missense_Mutation p.G982S 0.16 deleterious(0) possibly_damaging(0.894) TCGA-ER-A194-01 2 242189371 242189371 T C HDLBP Missense_Mutation p.K466R 0.47 tolerated(0.31) benign(0.161) TCGA-ER-A194-01 2 242683189 242683189 C T D2HGDH Nonsense_Mutation p.R215* 0.18 TCGA-ER-A194-01 2 242695190 242695190 C T D2HGDH Intron 0.74 TCGA-ER-A194-01 2 25016268 25016268 T C CENPO 5'UTR 0.33 TCGA-ER-A194-01 2 27016151 27016151 C T CENPA 3'UTR 0.27 TCGA-ER-A194-01 2 27279648 27279648 G A AGBL5 Missense_Mutation p.G508E 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 2 27279649 27279649 G A AGBL5 Silent p.G508G 0.26 TCGA-ER-A194-01 2 27320460 27320460 C T KHK Silent p.S169S 0.20 TCGA-ER-A194-01 2 27505722 27505722 C T TRIM54 Silent p.P41P 0.31 TCGA-ER-A194-01 2 27849745 27849745 G A CCDC121 3'Flank 0.40 TCGA-ER-A194-01 2 29222183 29222183 G A FAM179A Silent p.R92R 0.22 TCGA-ER-A194-01 2 29259573 29259573 G A FAM179A Missense_Mutation p.G862E 0.32 deleterious(0) probably_damaging(0.95) TCGA-ER-A194-01 2 29294425 29294425 G A C2orf71 Silent p.T901T 0.29 TCGA-ER-A194-01 2 29451835 29451835 C T ALK Missense_Mutation p.M910I 0.18 tolerated(0.31) benign(0.029) TCGA-ER-A194-01 2 32740546 32740546 T C BIRC6 Silent p.I3686I 0.31 TCGA-ER-A194-01 2 36994276 36994276 G A VIT Missense_Mutation p.G176E 0.32 tolerated(0.29) benign(0.007) TCGA-ER-A194-01 2 37035973 37035973 G A VIT Nonsense_Mutation p.W583* 0.25 TCGA-ER-A194-01 2 3726094 3726094 G A ALLC Missense_Mutation p.E41K 0.37 deleterious(0.03) possibly_damaging(0.457) TCGA-ER-A194-01 2 48897021 48897021 A G STON1-GTF2A1L Missense_Mutation p.D1084G 0.20 deleterious(0.04) benign(0.186) TCGA-ER-A194-01 2 50779739 50779739 C T NRXN1 Missense_Mutation p.R622K 0.25 deleterious(0.03) possibly_damaging(0.814) TCGA-ER-A194-01 2 60688835 60688835 G A BCL11A Silent p.P404P 0.29 TCGA-ER-A194-01 2 61006804 61006804 C T PAPOLG Missense_Mutation p.L243F 0.26 tolerated(0.07) possibly_damaging(0.8) TCGA-ER-A194-01 2 63223784 63223784 T A EHBP1 Missense_Mutation p.F1067I 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A194-01 2 63283240 63283240 C T OTX1 Missense_Mutation p.P285L 0.27 deleterious(0.01) unknown(0) TCGA-ER-A194-01 2 66667002 66667002 G A MEIS1 Silent p.L89L 0.28 TCGA-ER-A194-01 2 69098462 69098462 G A BMP10 Missense_Mutation p.A10V 0.14 tolerated(0.61) benign(0.001) TCGA-ER-A194-01 2 70315973 70315973 C G PCBP1 3'UTR 0.26 TCGA-ER-A194-01 2 71361903 71361903 C T MPHOSPH10 Silent p.S358S 0.23 TCGA-ER-A194-01 2 74327700 74327700 C T TET3 Missense_Mutation p.S1127F 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-ER-A194-01 2 74699807 74699807 G A MRPL53 5'UTR 0.38 TCGA-ER-A194-01 2 74749796 74749796 G A DQX1 Missense_Mutation p.P469L 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-ER-A194-01 2 77746756 77746756 T C LRRTM4 Missense_Mutation p.Q80R 0.34 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 2 85097784 85097784 G A TRABD2A Silent p.F78F 0.60 TCGA-ER-A194-01 2 85621987 85621987 G A CAPG 3'UTR 0.26 TCGA-ER-A194-01 2 85922508 85922508 G A GNLY Missense_Mutation p.E40K 0.17 tolerated(0.08) possibly_damaging(0.899) TCGA-ER-A194-01 2 87042542 87042542 G A CD8B 3'Flank 0.38 TCGA-ER-A194-01 2 88425751 88425751 C T FABP1 Missense_Mutation p.E62K 0.28 tolerated(0.58) benign(0.043) TCGA-ER-A194-01 2 88913278 88913278 G A EIF2AK3 Silent p.S134S 0.27 TCGA-ER-A194-01 2 88913279 88913279 G A EIF2AK3 Missense_Mutation p.S134F 0.26 deleterious(0.01) probably_damaging(0.945) TCGA-ER-A194-01 2 90259788 90259788 C T IGKV1D-8 Silent p.V5V 0.45 TCGA-ER-A194-01 2 9727594 9727594 G A YWHAQ Silent p.D209D 0.19 TCGA-ER-A194-01 2 99861889 99861889 C T LYG2 Missense_Mutation p.D73N 0.53 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 100174769 100174769 A G LNP1 Silent p.%3D 0.36 TCGA-ER-A194-01 3 100515259 100515259 C T ABI3BP Missense_Mutation p.E601K 0.28 tolerated(0.73) possibly_damaging(0.651) TCGA-ER-A194-01 3 10400425 10400425 C T ATP2B2 Missense_Mutation p.E696K 0.24 deleterious(0.04) benign(0.118) TCGA-ER-A194-01 3 108476028 108476028 C T RETNLB Missense_Mutation p.G2E 0.34 deleterious(0.02) benign(0.08) TCGA-ER-A194-01 3 108627031 108627031 G A GUCA1C Silent p.I156I 0.55 TCGA-ER-A194-01 3 111936354 111936354 G A SLC9C1 Silent p.T575T 0.22 TCGA-ER-A194-01 3 113377862 113377862 G A KIAA2018 Silent p.S889S 0.24 TCGA-ER-A194-01 3 113380127 113380127 G A KIAA2018 Silent p.V134V 0.29 TCGA-ER-A194-01 3 120876392 120876392 C T STXBP5L Silent p.F265F 0.29 TCGA-ER-A194-01 3 120959299 120959299 A C STXBP5L Missense_Mutation p.S449R 0.26 deleterious(0) benign(0.367) TCGA-ER-A194-01 3 120959300 120959300 G T STXBP5L Missense_Mutation p.S449I 0.26 deleterious(0) benign(0.367) TCGA-ER-A194-01 3 12194997 12194997 G A TIMP4 3'UTR 0.32 TCGA-ER-A194-01 3 12211286 12211286 G A SYN2 RNA 0.26 TCGA-ER-A194-01 3 122414425 122414425 C T PARP14 Missense_Mutation p.P251S 0.22 deleterious(0.05) probably_damaging(1) TCGA-ER-A194-01 3 124211629 124211629 C T KALRN Nonsense_Mutation p.R1576* 0.30 TCGA-ER-A194-01 3 124351299 124351299 G A KALRN Missense_Mutation p.G40S 0.24 tolerated(0.3) benign(0.065) TCGA-ER-A194-01 3 124696789 124696789 G A HEG1 Silent p.P1245P 0.38 TCGA-ER-A194-01 3 126126092 126126092 G A CCDC37 Missense_Mutation p.E43K 0.15 tolerated(1) benign(0) TCGA-ER-A194-01 3 126291310 126291310 C T TXNRD3NB Missense_Mutation p.R26K 0.22 benign(0.14) TCGA-ER-A194-01 3 126452010 126452010 C T CHCHD6 Missense_Mutation p.S119F 0.27 deleterious(0.03) benign(0.086) TCGA-ER-A194-01 3 126915906 126915906 C T C3orf56 Silent p.N126N 0.26 TCGA-ER-A194-01 3 127646650 127646650 G A KBTBD12 Missense_Mutation p.A372T 0.24 tolerated(0.5) benign(0.004) TCGA-ER-A194-01 3 128344834 128344834 G A RPN1 Silent p.P386P 0.26 TCGA-ER-A194-01 3 128623306 128623306 A G ACAD9 Silent p.Q369Q 0.20 TCGA-ER-A194-01 3 129137115 129137115 G A EFCAB12 Silent p.F221F 0.33 TCGA-ER-A194-01 3 129823041 129823041 C T FAM86HP RNA 0.26 TCGA-ER-A194-01 3 132389843 132389843 C T UBA5 Silent p.L177L 0.35 TCGA-ER-A194-01 3 133099203 133099203 C T TMEM108 Silent p.I216I 0.29 TCGA-ER-A194-01 3 133099414 133099414 G A TMEM108 Missense_Mutation p.G287S 0.25 tolerated(0.34) benign(0.019) TCGA-ER-A194-01 3 13378289 13378289 C T NUP210 Missense_Mutation p.E1228K 0.37 tolerated(0.08) benign(0.234) TCGA-ER-A194-01 3 134322410 134322410 G A KY 3'UTR 0.16 TCGA-ER-A194-01 3 136019952 136019952 C T PCCB Missense_Mutation p.S342F 0.23 deleterious_low_confidence(0.01) benign(0.361) TCGA-ER-A194-01 3 138738942 138738942 G A PRR23B Missense_Mutation p.P188S 0.19 tolerated(0.13) possibly_damaging(0.856) TCGA-ER-A194-01 3 13916510 13916510 G A WNT7A Missense_Mutation p.R78C 0.18 deleterious(0) probably_damaging(0.993) TCGA-ER-A194-01 3 140401350 140401350 G A TRIM42 Missense_Mutation p.E130K 0.32 tolerated(0.87) benign(0.002) TCGA-ER-A194-01 3 142178084 142178084 G A ATR Missense_Mutation p.P2445L 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 142281234 142281234 A T ATR Missense_Mutation p.L337H 0.28 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-ER-A194-01 3 14558700 14558700 G A GRIP2 RNA 0.27 TCGA-ER-A194-01 3 14814336 14814336 G A C3orf20 Missense_Mutation p.R890K 0.17 tolerated_low_confidence(0.94) benign(0.003) TCGA-ER-A194-01 3 15265016 15265016 C T CAPN7 Missense_Mutation p.P225S 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 15457302 15457302 G T METTL6 Missense_Mutation p.L170I 0.28 tolerated(0.23) benign(0.016) TCGA-ER-A194-01 3 154802038 154802038 G A MME Missense_Mutation p.E28K 0.24 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 3 155206484 155206484 C T PLCH1 Missense_Mutation p.G823E 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 155222393 155222393 C T PLCH1 Missense_Mutation p.G540E 0.20 tolerated(0.05) benign(0.027) TCGA-ER-A194-01 3 155861161 155861161 G A KCNAB1 Intron 0.29 TCGA-ER-A194-01 3 15762437 15762437 G A ANKRD28 Silent p.A297A 0.30 TCGA-ER-A194-01 3 15762438 15762438 G A ANKRD28 Missense_Mutation p.A297V 0.30 deleterious(0.03) probably_damaging(0.975) TCGA-ER-A194-01 3 158787126 158787126 C T IQCJ 5'UTR 0.29 TCGA-ER-A194-01 3 159998559 159998559 G A IFT80 Silent p.I520I 0.24 TCGA-ER-A194-01 3 160474331 160474331 G A PPM1L Missense_Mutation p.E79K 0.31 tolerated(0.61) benign(0.017) TCGA-ER-A194-01 3 160474333 160474333 G A PPM1L Silent p.E79E 0.31 TCGA-ER-A194-01 3 164716414 164716414 G A SI Missense_Mutation p.S1485F 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 167189477 167189477 G A SERPINI2 Missense_Mutation p.P49L 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 169572730 169572730 C T LRRC31 Missense_Mutation p.D288N 0.31 tolerated(0.06) probably_damaging(0.922) TCGA-ER-A194-01 3 172165900 172165900 G A GHSR Missense_Mutation p.R102C 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-ER-A194-01 3 172241118 172241118 G A TNFSF10 Silent p.I19I 0.34 TCGA-ER-A194-01 3 172835398 172835398 C T SPATA16 Missense_Mutation p.E42K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-ER-A194-01 3 178546080 178546080 C T KCNMB2 Silent p.L114L 0.26 TCGA-ER-A194-01 3 183547402 183547402 C T PARL Missense_Mutation p.G375E 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-ER-A194-01 3 183962449 183962449 G A ALG3 Silent p.L222L 0.36 TCGA-ER-A194-01 3 186002490 186002490 G A DGKG Missense_Mutation p.R185C 0.31 deleterious(0) possibly_damaging(0.847) TCGA-ER-A194-01 3 189526126 189526126 C T TP63 Silent p.S130S 0.30 TCGA-ER-A194-01 3 189582106 189582106 G A TP63 Missense_Mutation p.G222E 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 189585721 189585721 G A TP63 Missense_Mutation p.E328K 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A194-01 3 189597878 189597878 G A TP63 Intron 0.40 TCGA-ER-A194-01 3 194062658 194062658 G A CPN2 Silent p.L258L 0.26 TCGA-ER-A194-01 3 194080534 194080534 C T LRRC15 Silent p.G419G 0.14 TCGA-ER-A194-01 3 19559495 19559495 G A KCNH8 Missense_Mutation p.E850K 0.19 tolerated(0.34) benign(0.034) TCGA-ER-A194-01 3 19575643 19575643 G A KCNH8 3'UTR 0.25 TCGA-ER-A194-01 3 196388044 196388044 C T NRROS Silent p.A510A 0.29 TCGA-ER-A194-01 3 19940296 19940296 C T EFHB Missense_Mutation p.G515E 0.25 deleterious(0) probably_damaging(0.995) TCGA-ER-A194-01 3 27216230 27216230 C T NEK10 Missense_Mutation p.G867D 0.26 tolerated(0.23) benign(0.204) TCGA-ER-A194-01 3 31674562 31674562 C T STT3B Missense_Mutation p.P775S 0.19 tolerated(0.45) benign(0.017) TCGA-ER-A194-01 3 36874420 36874420 G T TRANK1 Silent p.A2174A 0.30 TCGA-ER-A194-01 3 37818899 37818899 G A ITGA9 Missense_Mutation p.G853E 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 38739043 38739043 G A SCN10A Missense_Mutation p.P1890S 0.26 tolerated(0.15) benign(0.066) TCGA-ER-A194-01 3 38770165 38770165 G A SCN10A Silent p.F836F 0.28 TCGA-ER-A194-01 3 3887625 3887625 C T LRRN1 Missense_Mutation p.R434C 0.27 deleterious(0.05) possibly_damaging(0.67) TCGA-ER-A194-01 3 39227656 39227656 C T XIRP1 Missense_Mutation p.R1094Q 0.24 tolerated(0.48) benign(0.001) TCGA-ER-A194-01 3 39449176 39449176 A G RPSA Missense_Mutation p.K11R 0.33 tolerated(0.12) benign(0.001) TCGA-ER-A194-01 3 42304977 42304977 C T CCK Missense_Mutation p.R49K 0.24 tolerated(0.14) benign(0.024) TCGA-ER-A194-01 3 42576563 42576563 G A VIPR1 Silent p.K369K 0.24 TCGA-ER-A194-01 3 44672663 44672663 C T ZNF197 Missense_Mutation p.P167L 0.25 tolerated(0.45) benign(0) TCGA-ER-A194-01 3 45153805 45153805 G A CDCP1 Missense_Mutation p.S142F 0.24 deleterious(0) probably_damaging(0.938) TCGA-ER-A194-01 3 46009409 46009409 G A FYCO1 Silent p.L473L 0.21 TCGA-ER-A194-01 3 46245091 46245091 G A CCR1 Silent p.V238V 0.54 TCGA-ER-A194-01 3 4714878 4714878 G A ITPR1 Missense_Mutation p.E740K 0.23 tolerated(0.32) benign(0.001) TCGA-ER-A194-01 3 48040154 48040154 G A MAP4 Missense_Mutation p.P66L 0.26 deleterious(0.03) benign(0.041) TCGA-ER-A194-01 3 48040155 48040155 G A MAP4 Missense_Mutation p.P66S 0.25 tolerated(0.08) benign(0.045) TCGA-ER-A194-01 3 48338250 48338250 C T NME6 Missense_Mutation p.E62K 0.25 tolerated(0.12) benign(0.068) TCGA-ER-A194-01 3 49569593 49569593 C T DAG1 Missense_Mutation p.S550F 0.17 tolerated(0.14) benign(0.028) TCGA-ER-A194-01 3 50603148 50603148 C T C3orf18 5'UTR 0.38 TCGA-ER-A194-01 3 51297584 51297584 C T DOCK3 Intron 0.24 TCGA-ER-A194-01 3 52817134 52817134 G A ITIH1 Silent p.L364L 0.29 TCGA-ER-A194-01 3 52841067 52841067 G A ITIH3 Missense_Mutation p.R736K 0.50 tolerated(0.07) benign(0.065) TCGA-ER-A194-01 3 52876848 52876848 G A TMEM110-MUSTN1 Silent p.S249S 0.38 TCGA-ER-A194-01 3 53757600 53757600 G A CACNA1D Silent p.T622T 0.23 TCGA-ER-A194-01 3 54420801 54420801 G A CACNA2D3 Silent p.Q127Q 0.17 TCGA-ER-A194-01 3 54913077 54913077 G A CACNA2D3 Silent p.G581G 0.19 TCGA-ER-A194-01 3 54952727 54952727 C T LRTM1 Missense_Mutation p.R266Q 0.46 tolerated(0.66) benign(0.001) TCGA-ER-A194-01 3 56468585 56468585 G A ERC2 Nonsense_Mutation p.Q151* 0.32 TCGA-ER-A194-01 3 58110173 58110173 G A FLNB Missense_Mutation p.C1280Y 0.21 tolerated(0.13) benign(0.035) TCGA-ER-A194-01 3 59999827 59999827 G A FHIT Missense_Mutation p.P52L 0.14 deleterious(0.02) benign(0.084) TCGA-ER-A194-01 3 63542262 63542262 G A SYNPR Missense_Mutation p.E85K 0.23 tolerated(0.46) benign(0.017) TCGA-ER-A194-01 3 63823651 63823651 C T THOC7 Splice_Site p.X118_splice 0.27 TCGA-ER-A194-01 3 69151138 69151138 A T ARL6IP5 Missense_Mutation p.S109C 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-ER-A194-01 3 73433255 73433255 G A PDZRN3 Missense_Mutation p.T821I 0.24 tolerated(0.17) benign(0.001) TCGA-ER-A194-01 3 74313579 74313579 C G CNTN3 Silent p.L1020L 0.10 TCGA-ER-A194-01 3 7620525 7620525 C T GRM7 Silent p.F644F 0.26 TCGA-ER-A194-01 3 7620628 7620628 C T GRM7 Missense_Mutation p.R679W 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 3 77595570 77595570 G A ROBO2 Missense_Mutation p.G355E 0.24 deleterious(0) probably_damaging(0.982) TCGA-ER-A194-01 3 77666856 77666856 A G ROBO2 Silent p.Q1178Q 0.22 TCGA-ER-A194-01 3 8579050 8579050 C T LMCD1 Missense_Mutation p.P104L 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 3 8675472 8675472 C T SSUH2 Silent p.A73A 0.37 TCGA-ER-A194-01 3 88040382 88040382 G A HTR1F Nonsense_Mutation p.W161* 0.42 TCGA-ER-A194-01 3 9290683 9290683 C T SRGAP3 5'UTR 0.29 TCGA-ER-A194-01 3 93598148 93598148 G A PROS1 Silent p.S501S 0.24 TCGA-ER-A194-01 3 97983449 97983449 G A OR5H6 Missense_Mutation p.M107I 0.32 tolerated(0.21) benign(0.001) TCGA-ER-A194-01 3 98002026 98002026 C T OR5H2 Silent p.L99L 0.23 TCGA-ER-A194-01 3 98002221 98002221 C T OR5H2 Missense_Mutation p.H164Y 0.27 deleterious(0.03) benign(0.248) TCGA-ER-A194-01 3 9804831 9804831 G A CAMK1 Silent p.I94I 0.22 TCGA-ER-A194-01 3 98072975 98072975 C T OR5K4 Missense_Mutation p.S93F 0.26 deleterious(0.02) benign(0.299) TCGA-ER-A194-01 3 99886606 99886606 G A CMSS1 Missense_Mutation p.R147K 0.31 tolerated(0.67) benign(0.016) TCGA-ER-A194-01 4 100349017 100349017 C T ADH7 Silent p.K179K 0.22 TCGA-ER-A194-01 4 102994868 102994868 G A BANK1 Missense_Mutation p.E776K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-ER-A194-01 4 104061189 104061189 T - CENPE Frame_Shift_Del p.D1988Mfs*4 0.20 TCGA-ER-A194-01 4 104067193 104067193 G A CENPE Silent p.I1402I 0.28 TCGA-ER-A194-01 4 104511109 104511109 G A TACR3 Silent p.F376F 0.28 TCGA-ER-A194-01 4 107253027 107253027 T C AIMP1 Missense_Mutation p.V221A 0.37 deleterious(0) possibly_damaging(0.78) TCGA-ER-A194-01 4 11400899 11400899 G A HS3ST1 Missense_Mutation p.S244L 0.16 tolerated(0.06) probably_damaging(0.97) TCGA-ER-A194-01 4 114823624 114823624 G A ARSJ Missense_Mutation p.P536S 0.38 deleterious(0.03) probably_damaging(1) TCGA-ER-A194-01 4 115856484 115856484 G A NDST4 Missense_Mutation p.P472S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A194-01 4 115997368 115997368 C T NDST4 Silent p.L275L 0.23 TCGA-ER-A194-01 4 122722486 122722486 C T EXOSC9 5'UTR 0.22 TCGA-ER-A194-01 4 122760816 122760816 G A BBS7 Silent p.C447C 0.14 TCGA-ER-A194-01 4 126242341 126242341 C T FAT4 Missense_Mutation p.P1592L 0.29 probably_damaging(0.955) TCGA-ER-A194-01 4 126372419 126372419 G A FAT4 Silent p.G3416G 0.27 TCGA-ER-A194-01 4 126373533 126373533 G A FAT4 Missense_Mutation p.E3788K 0.33 benign(0.223) TCGA-ER-A194-01 4 128725193 128725193 C T HSPA4L Silent p.S312S 0.19 TCGA-ER-A194-01 4 138452985 138452985 G A PCDH18 Silent p.I86I 0.22 TCGA-ER-A194-01 4 139966000 139966000 C T CCRN4L Missense_Mutation p.P223L 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 4 140641034 140641034 C T MAML3 Missense_Mutation p.G954R 0.24 possibly_damaging(0.873) TCGA-ER-A194-01 4 146044254 146044254 C T ABCE1 Silent p.L449L 0.25 TCGA-ER-A194-01 4 147796069 147796069 C T TTC29 Missense_Mutation p.E200K 0.25 tolerated(0.94) benign(0.042) TCGA-ER-A194-01 4 153884242 153884242 C A FHDC1 Missense_Mutation p.A330E 0.24 deleterious(0) probably_damaging(0.992) TCGA-ER-A194-01 4 154513649 154513649 A T KIAA0922 Missense_Mutation p.N612I 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 4 154513650 154513650 C T KIAA0922 Silent p.N612N 0.29 TCGA-ER-A194-01 4 154625158 154625158 C T TLR2 Missense_Mutation p.L367F 0.12 tolerated(0.22) probably_damaging(0.997) TCGA-ER-A194-01 4 155720062 155720062 G A RBM46 Missense_Mutation p.E250K 0.42 deleterious(0) benign(0.428) TCGA-ER-A194-01 4 155749210 155749210 C T RBM46 Silent p.S531S 0.23 TCGA-ER-A194-01 4 156631770 156631770 C T GUCY1A3 Silent p.I151I 0.35 TCGA-ER-A194-01 4 156632084 156632084 C T GUCY1A3 Missense_Mutation p.S256F 0.24 tolerated(0.11) possibly_damaging(0.753) TCGA-ER-A194-01 4 159048669 159048669 C T FAM198B Missense_Mutation p.G492R 0.32 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 4 162459366 162459366 C T FSTL5 Missense_Mutation p.D422N 0.33 deleterious(0.04) probably_damaging(0.995) TCGA-ER-A194-01 4 169099099 169099099 T G ANXA10 Missense_Mutation p.I198S 0.22 deleterious(0) benign(0.405) TCGA-ER-A194-01 4 169392998 169392998 G A DDX60L Missense_Mutation p.S55L 0.34 tolerated(0.07) benign(0.022) TCGA-ER-A194-01 4 169812116 169812116 G A PALLD Missense_Mutation p.D670N 0.19 deleterious(0) probably_damaging(0.937) TCGA-ER-A194-01 4 173873375 173873375 C T GALNTL6 Missense_Mutation p.P446L 0.45 deleterious(0) probably_damaging(0.987) TCGA-ER-A194-01 4 1804710 1804710 G A FGFR3 Missense_Mutation p.G334S 0.38 deleterious(0.01) probably_damaging(1) TCGA-ER-A194-01 4 187005018 187005018 G A TLR3 Silent p.E726E 0.44 TCGA-ER-A194-01 4 187209661 187209661 G A F11 Missense_Mutation p.G591S 0.41 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 4 20493404 20493404 C T SLIT2 Missense_Mutation p.P266S 0.21 tolerated(0.4) benign(0.002) TCGA-ER-A194-01 4 20618811 20618811 C T SLIT2 Missense_Mutation p.L1376F 0.29 tolerated(0.19) possibly_damaging(0.649) TCGA-ER-A194-01 4 23815730 23815730 C T PPARGC1A Missense_Mutation p.R459Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 4 25821477 25821477 G A SEL1L3 Missense_Mutation p.S459F 0.23 tolerated(0.19) benign(0.002) TCGA-ER-A194-01 4 2901061 2901061 C T ADD1 Missense_Mutation p.R354C 0.16 tolerated(0.14) probably_damaging(0.924) TCGA-ER-A194-01 4 2928375 2928375 G A ADD1 Intron 0.20 TCGA-ER-A194-01 4 3146924 3146924 G A HTT Missense_Mutation p.V1038I 0.32 benign(0.035) TCGA-ER-A194-01 4 36069714 36069714 G A ARAP2 Missense_Mutation p.P1644S 0.26 tolerated(0.88) benign(0.002) TCGA-ER-A194-01 4 36163120 36163120 C T ARAP2 Missense_Mutation p.M742I 0.12 deleterious(0.01) possibly_damaging(0.876) TCGA-ER-A194-01 4 37848881 37848881 G A PGM2 Missense_Mutation p.G416E 0.17 deleterious(0.03) probably_damaging(0.958) TCGA-ER-A194-01 4 37848882 37848882 G A PGM2 Silent p.G416G 0.17 TCGA-ER-A194-01 4 38682284 38682284 C T KLF3 Missense_Mutation p.A13V 0.28 tolerated(0.62) benign(0.002) TCGA-ER-A194-01 4 39290255 39290255 T C RFC1 3'UTR 0.40 TCGA-ER-A194-01 4 40099190 40099190 G A N4BP2 Splice_Site p.X77_splice 0.26 TCGA-ER-A194-01 4 40438507 40438507 C T RBM47 Silent p.P427P 0.26 TCGA-ER-A194-01 4 41748208 41748208 G A PHOX2B Silent p.A187A 0.28 TCGA-ER-A194-01 4 46252465 46252465 C T GABRA2 Missense_Mutation p.E406K 0.28 tolerated(0.11) possibly_damaging(0.734) TCGA-ER-A194-01 4 48097181 48097181 G A TXK Missense_Mutation p.S187F 0.31 deleterious(0) probably_damaging(0.961) TCGA-ER-A194-01 4 48577174 48577174 G A FRYL Missense_Mutation p.L936F 0.28 deleterious(0.01) probably_damaging(0.958) TCGA-ER-A194-01 4 48605326 48605326 G A FRYL Missense_Mutation p.S305L 0.24 deleterious(0) benign(0.001) TCGA-ER-A194-01 4 48852045 48852045 C T OCIAD1 Missense_Mutation p.S108F 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 4 648636 648636 C T PDE6B Silent p.I317I 0.18 TCGA-ER-A194-01 4 65275126 65275126 C T TECRL 5'UTR 0.19 TCGA-ER-A194-01 4 6865515 6865515 C T KIAA0232 Missense_Mutation p.P1136S 0.22 deleterious(0.01) benign(0.254) TCGA-ER-A194-01 4 69101961 69101961 C T TMPRSS11B Missense_Mutation p.D50N 0.33 tolerated(0.21) benign(0.012) TCGA-ER-A194-01 4 69535652 69535652 C T UGT2B15 Missense_Mutation p.D229N 0.30 tolerated(1) benign(0.009) TCGA-ER-A194-01 4 70078427 70078427 G A UGT2B11 Missense_Mutation p.T245I 0.19 deleterious(0) probably_damaging(0.968) TCGA-ER-A194-01 4 70360875 70360875 G A UGT2B4 Silent p.F235F 0.15 TCGA-ER-A194-01 4 71498390 71498390 A T ENAM Missense_Mutation p.N64I 0.28 deleterious(0.01) benign(0.045) TCGA-ER-A194-01 4 74453564 74453564 G A RASSF6 Silent p.S157S 0.23 TCGA-ER-A194-01 4 76489641 76489641 G A C4orf26 Silent p.R143R 0.33 TCGA-ER-A194-01 4 76582156 76582156 G A G3BP2 Missense_Mutation p.R132C 0.25 deleterious(0.02) possibly_damaging(0.896) TCGA-ER-A194-01 4 77255279 77255279 C T CCDC158 Silent p.R902R 0.36 TCGA-ER-A194-01 4 82353484 82353484 G A RASGEF1B Missense_Mutation p.H456Y 0.22 deleterious(0.02) benign(0.126) TCGA-ER-A194-01 4 84230618 84230618 C T HPSE Silent p.K307K 0.23 TCGA-ER-A194-01 4 85562059 85562059 C T CDS1 Silent p.S316S 0.24 TCGA-ER-A194-01 4 88085213 88085213 G A KLHL8 Missense_Mutation p.S519F 0.24 deleterious(0) probably_damaging(0.986) TCGA-ER-A194-01 4 88731887 88731887 G A IBSP Missense_Mutation p.G126R 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-ER-A194-01 4 89574082 89574082 C T HERC3 Missense_Mutation p.P176S 0.28 tolerated(0.48) benign(0.024) TCGA-ER-A194-01 4 94031981 94031981 C T GRID2 Silent p.I204I 0.31 TCGA-ER-A194-01 4 952241 952241 G A TMEM175 Missense_Mutation p.G491D 0.36 tolerated(0.4) benign(0.005) TCGA-ER-A194-01 4 96761629 96761629 G A PDHA2 Missense_Mutation p.D110N 0.28 deleterious(0) probably_damaging(0.992) TCGA-ER-A194-01 4 9909924 9909924 G A SLC2A9 Missense_Mutation p.P350S 0.10 tolerated(0.44) benign(0.068) TCGA-ER-A194-01 5 101816134 101816134 C T SLCO6A1 Silent p.V121V 0.31 TCGA-ER-A194-01 5 102345530 102345530 C T PAM Missense_Mutation p.S764F 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A194-01 5 110560272 110560272 G A CAMK4 Missense_Mutation p.D31N 0.19 deleterious(0) possibly_damaging(0.907) TCGA-ER-A194-01 5 120022285 120022285 G A PRR16 Missense_Mutation p.G243R 0.30 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-ER-A194-01 5 121759425 121759425 C T SNCAIP Silent p.I331I 0.17 TCGA-ER-A194-01 5 126869366 126869366 T C PRRC1 Missense_Mutation p.V270A 0.34 deleterious(0) possibly_damaging(0.906) TCGA-ER-A194-01 5 127671215 127671215 G A FBN2 Missense_Mutation p.S1260L 0.27 tolerated(0.09) benign(0.023) TCGA-ER-A194-01 5 128368934 128368934 G A SLC27A6 Missense_Mutation p.E607K 0.26 deleterious(0.04) benign(0.23) TCGA-ER-A194-01 5 130828463 130828463 G A RAPGEF6 Missense_Mutation p.L515F 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 5 133473817 133473817 A T TCF7 Missense_Mutation p.H170L 0.34 deleterious(0) benign(0.122) TCGA-ER-A194-01 5 134782696 134782696 G A C5orf20 Missense_Mutation p.P35S 0.20 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-ER-A194-01 5 134907510 134907510 G A CXCL14 3'UTR 0.14 TCGA-ER-A194-01 5 135276775 135276775 C A FBXL21 RNA 0.24 TCGA-ER-A194-01 5 138282767 138282767 C T SIL1 3'UTR 0.67 TCGA-ER-A194-01 5 13901560 13901560 C T DNAH5 Missense_Mutation p.R618Q 0.63 benign(0.22) TCGA-ER-A194-01 5 139941387 139941387 G A APBB3 Intron 0.25 TCGA-ER-A194-01 5 140011422 140011422 C T CD14 3'UTR 0.31 TCGA-ER-A194-01 5 140167200 140167200 C T PCDHA1 Missense_Mutation p.S442F 0.31 deleterious_low_confidence(0.04) benign(0.046) TCGA-ER-A194-01 5 140182848 140182848 C T PCDHA3 Missense_Mutation p.P689L 0.32 tolerated_low_confidence(0.07) benign(0.007) TCGA-ER-A194-01 5 140201924 140201924 G A PCDHA5 Silent p.T188T 0.26 TCGA-ER-A194-01 5 140207946 140207946 C T PCDHA6 Silent p.I90I 0.25 TCGA-ER-A194-01 5 140215568 140215568 C T PCDHA7 Nonsense_Mutation p.Q534* 0.20 TCGA-ER-A194-01 5 140221363 140221363 C T PCDHA8 Missense_Mutation p.P153S 0.24 tolerated_low_confidence(0.09) benign(0.072) TCGA-ER-A194-01 5 140221551 140221551 A T PCDHA8 Silent p.T215T 0.26 TCGA-ER-A194-01 5 140223227 140223227 C T PCDHA8 Missense_Mutation p.P774L 0.30 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-ER-A194-01 5 140229256 140229256 C T PCDHA9 Silent p.H392H 0.33 TCGA-ER-A194-01 5 140255703 140255703 G A PCDHA12 Missense_Mutation p.D216N 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A194-01 5 140257122 140257122 C T PCDHA12 Missense_Mutation p.P689S 0.22 tolerated_low_confidence(0.32) benign(0.007) TCGA-ER-A194-01 5 140347891 140347891 C T PCDHAC2 Nonsense_Mutation p.Q514* 0.20 TCGA-ER-A194-01 5 140501943 140501943 G A PCDHB4 Silent p.L121L 0.34 TCGA-ER-A194-01 5 140503688 140503688 C T PCDHB4 Missense_Mutation p.S703L 0.25 deleterious_low_confidence(0) benign(0.082) TCGA-ER-A194-01 5 140515442 140515442 C T PCDHB5 Silent p.I142I 0.23 TCGA-ER-A194-01 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.24 tolerated_low_confidence(0.62) benign(0) TCGA-ER-A194-01 5 140558780 140558780 G A PCDHB8 Missense_Mutation p.D389N 0.32 tolerated_low_confidence(0.39) benign(0.004) TCGA-ER-A194-01 5 140559941 140559941 C T PCDHB8 Nonsense_Mutation p.Q776* 0.23 TCGA-ER-A194-01 5 140563568 140563568 A T PCDHB16 Missense_Mutation p.R478S 0.26 tolerated_low_confidence(0.49) benign(0.006) TCGA-ER-A194-01 5 140572902 140572902 C T PCDHB10 Silent p.F259F 0.27 TCGA-ER-A194-01 5 140573559 140573559 A T PCDHB10 Missense_Mutation p.R478S 0.08 tolerated_low_confidence(0.47) benign(0.041) TCGA-ER-A194-01 5 140588593 140588593 A C PCDHB12 Missense_Mutation p.E38D 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ER-A194-01 5 140589646 140589646 C T PCDHB12 Silent p.I389I 0.30 TCGA-ER-A194-01 5 140594265 140594265 G A PCDHB13 Silent p.R190R 0.14 TCGA-ER-A194-01 5 140723849 140723849 C T PCDHGA3 Silent p.S83S 0.27 TCGA-ER-A194-01 5 140740899 140740899 G A PCDHGB2 Silent p.K399K 0.28 TCGA-ER-A194-01 5 140751458 140751458 G A PCDHGB3 Silent p.R499R 0.33 TCGA-ER-A194-01 5 143853436 143853436 G A KCTD16 Missense_Mutation p.G349D 0.29 tolerated(0.12) probably_damaging(0.97) TCGA-ER-A194-01 5 145393624 145393624 G A SH3RF2 Silent p.Q353Q 0.35 TCGA-ER-A194-01 5 145439483 145439483 C T SH3RF2 Missense_Mutation p.S537F 0.33 deleterious(0) probably_damaging(0.95) TCGA-ER-A194-01 5 145439634 145439634 G A SH3RF2 Silent p.R587R 0.28 TCGA-ER-A194-01 5 145439635 145439635 G A SH3RF2 Missense_Mutation p.G588S 0.28 tolerated(0.14) benign(0.035) TCGA-ER-A194-01 5 147051446 147051446 G A JAKMIP2 5'UTR 0.18 TCGA-ER-A194-01 5 147465992 147465992 G A SPINK5 Missense_Mutation p.G103R 0.43 tolerated(0.36) possibly_damaging(0.891) TCGA-ER-A194-01 5 147665570 147665570 C T SPINK13 Missense_Mutation p.H82Y 0.31 deleterious(0.01) benign(0.206) TCGA-ER-A194-01 5 148207120 148207120 C T ADRB2 Silent p.V242V 0.21 TCGA-ER-A194-01 5 153065807 153065807 G A GRIA1 Missense_Mutation p.G361E 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 5 158745789 158745789 G A IL12B Silent p.S270S 0.25 TCGA-ER-A194-01 5 158750299 158750299 C T IL12B Missense_Mutation p.G43R 0.23 deleterious(0.04) benign(0.09) TCGA-ER-A194-01 5 15936891 15936891 G C FBXL7 Missense_Mutation p.A358P 0.43 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 5 159680408 159680408 G A CCNJL Missense_Mutation p.P429S 0.25 tolerated(0.06) benign(0.15) TCGA-ER-A194-01 5 159680441 159680441 C T CCNJL Missense_Mutation p.G418R 0.29 tolerated(0.06) benign(0.12) TCGA-ER-A194-01 5 160049592 160049592 C T ATP10B Missense_Mutation p.E541K 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 5 161324544 161324544 T C GABRA1 3'UTR 0.31 TCGA-ER-A194-01 5 167552022 167552022 G A TENM2 Missense_Mutation p.D726N 0.53 tolerated(0.07) benign(0.1) TCGA-ER-A194-01 5 167850706 167850706 G A WWC1 Silent p.V481V 0.16 TCGA-ER-A194-01 5 168114072 168114072 C T SLIT3 Missense_Mutation p.D1076N 0.30 tolerated(0.23) benign(0.029) TCGA-ER-A194-01 5 168150008 168150008 C T SLIT3 Missense_Mutation p.D781N 0.30 deleterious(0) probably_damaging(0.994) TCGA-ER-A194-01 5 168175381 168175381 C T SLIT3 Missense_Mutation p.M732I 0.31 tolerated(0.15) benign(0.001) TCGA-ER-A194-01 5 169021419 169021419 G A SPDL1 Missense_Mutation p.D235N 0.34 deleterious(0) possibly_damaging(0.841) TCGA-ER-A194-01 5 170221237 170221237 G A GABRP Missense_Mutation p.E59K 0.31 tolerated(0.73) benign(0.003) TCGA-ER-A194-01 5 172750341 172750341 C T STC2 Silent p.R129R 0.45 TCGA-ER-A194-01 5 175530300 175530300 G A FAM153B Silent p.K168K 0.12 TCGA-ER-A194-01 5 176008431 176008431 G A CDHR2 Missense_Mutation p.D636N 0.26 tolerated(0.56) benign(0.107) TCGA-ER-A194-01 5 176306731 176306731 C T UNC5A Silent p.S791S 0.18 TCGA-ER-A194-01 5 176308361 176308361 G A HK3 Silent p.L857L 0.28 TCGA-ER-A194-01 5 176813289 176813289 C T SLC34A1 Silent p.T109T 0.26 TCGA-ER-A194-01 5 178140027 178140027 G A ZNF354A Silent p.S284S 0.29 TCGA-ER-A194-01 5 178392614 178392614 G A ZNF454 Silent p.R403R 0.39 TCGA-ER-A194-01 5 178413566 178413566 C T GRM6 Silent p.R563R 0.19 TCGA-ER-A194-01 5 178504079 178504079 A G ZNF354C Silent p.P54P 0.33 TCGA-ER-A194-01 5 178581184 178581184 C T ADAMTS2 Missense_Mutation p.M416I 0.33 deleterious(0.01) possibly_damaging(0.619) TCGA-ER-A194-01 5 179268988 179268988 G A C5orf45 Missense_Mutation p.T123I 0.27 tolerated(0.07) benign(0.18) TCGA-ER-A194-01 5 180326224 180326224 G A BTNL8 5'UTR 0.21 TCGA-ER-A194-01 5 19473264 19473264 C T CDH18 3'UTR 0.27 TCGA-ER-A194-01 5 21752109 21752109 C T CDH12 Missense_Mutation p.E708K 0.19 tolerated(0.62) benign(0.021) TCGA-ER-A194-01 5 23521133 23521133 G A PRDM9 Missense_Mutation p.G118E 0.49 tolerated_low_confidence(0.34) benign(0.009) TCGA-ER-A194-01 5 26915882 26915882 G A CDH9 Missense_Mutation p.R127C 0.49 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 5 31299667 31299667 G A CDH6 Missense_Mutation p.G247E 0.21 deleterious(0) possibly_damaging(0.842) TCGA-ER-A194-01 5 31302253 31302253 C T CDH6 Missense_Mutation p.P283S 0.22 tolerated(0.05) benign(0.163) TCGA-ER-A194-01 5 31302386 31302386 G A CDH6 Missense_Mutation p.G327E 0.28 deleterious(0) possibly_damaging(0.744) TCGA-ER-A194-01 5 31995809 31995809 G A PDZD2 Missense_Mutation p.G369E 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 5 37815993 37815993 C T GDNF Silent p.L149L 0.30 TCGA-ER-A194-01 5 38406262 38406262 C T EGFLAM Silent p.P249P 0.30 TCGA-ER-A194-01 5 38881853 38881853 G A OSMR Nonsense_Mutation p.W135* 0.24 TCGA-ER-A194-01 5 40909676 40909676 C T C7 5'UTR 0.34 TCGA-ER-A194-01 5 40958352 40958352 G A C7 Missense_Mutation p.G493E 0.19 tolerated(0.62) benign(0.029) TCGA-ER-A194-01 5 41033182 41033182 G A MROH2B Silent p.F774F 0.31 TCGA-ER-A194-01 5 41154047 41154047 G A C6 Nonsense_Mutation p.Q719* 0.32 TCGA-ER-A194-01 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-ER-A194-01 5 45262141 45262141 G A HCN1 Missense_Mutation p.P852L 0.31 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-ER-A194-01 5 5242214 5242214 C T ADAMTS16 Missense_Mutation p.P858S 0.26 tolerated(0.12) benign(0.144) TCGA-ER-A194-01 5 55185828 55185828 G A IL31RA Missense_Mutation p.D213N 0.31 tolerated(0.43) benign(0.002) TCGA-ER-A194-01 5 56170920 56170920 C T MAP3K1 Missense_Mutation p.A583V 0.30 deleterious(0) probably_damaging(0.957) TCGA-ER-A194-01 5 56170921 56170921 C T MAP3K1 Silent p.A583A 0.30 TCGA-ER-A194-01 5 57750513 57750513 G A PLK2 Missense_Mutation p.S652F 0.32 deleterious(0) possibly_damaging(0.857) TCGA-ER-A194-01 5 58271584 58271584 A T PDE4D Missense_Mutation p.I638K 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A194-01 5 60369017 60369017 G A NDUFAF2 Missense_Mutation p.G65R 0.29 deleterious(0) probably_damaging(0.963) TCGA-ER-A194-01 5 65081632 65081632 C T NLN Missense_Mutation p.P285S 0.29 tolerated(0.61) benign(0.004) TCGA-ER-A194-01 5 6616888 6616888 G A NSUN2 Missense_Mutation p.P325S 0.54 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 5 71533925 71533925 C T MRPS27 Silent p.L104L 0.19 TCGA-ER-A194-01 5 73163946 73163946 C T ARHGEF28 Silent p.S773S 0.35 TCGA-ER-A194-01 5 74695139 74695139 G A COL4A3BP Missense_Mutation p.S523F 0.22 deleterious(0.02) benign(0.28) TCGA-ER-A194-01 5 75960883 75960883 G A IQGAP2 Silent p.K854K 0.25 TCGA-ER-A194-01 5 79027218 79027218 C T CMYA5 Missense_Mutation p.S877F 0.35 probably_damaging(0.979) TCGA-ER-A194-01 5 79855016 79855016 C T ANKRD34B Missense_Mutation p.E275K 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A194-01 5 79855405 79855405 C T ANKRD34B Missense_Mutation p.G145E 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 5 80071573 80071573 G A MSH3 Missense_Mutation p.G772R 0.19 deleterious(0.02) probably_damaging(0.97) TCGA-ER-A194-01 5 89953787 89953787 G A GPR98 Missense_Mutation p.D1482N 0.37 probably_damaging(0.945) TCGA-ER-A194-01 5 89954007 89954007 C T GPR98 Missense_Mutation p.S1555L 0.19 possibly_damaging(0.885) TCGA-ER-A194-01 5 89981675 89981675 G A GPR98 Missense_Mutation p.G2118E 0.25 probably_damaging(0.999) TCGA-ER-A194-01 5 89990385 89990385 C T GPR98 Silent p.T2604T 0.25 TCGA-ER-A194-01 5 90024571 90024571 G A GPR98 Missense_Mutation p.G3416E 0.43 benign(0.002) TCGA-ER-A194-01 5 90040914 90040914 C T GPR98 Missense_Mutation p.S3534L 0.18 benign(0) TCGA-ER-A194-01 5 93076451 93076451 G A POU5F2 Silent p.S273S 0.29 TCGA-ER-A194-01 5 9337893 9337893 C T SEMA5A Silent p.A52A 0.27 TCGA-ER-A194-01 5 94224666 94224666 C T MCTP1 Silent p.R617R 0.31 TCGA-ER-A194-01 5 9629871 9629871 C T TAS2R1 Missense_Mutation p.E92K 0.24 tolerated(0.1) benign(0.065) TCGA-ER-A194-01 5 98232049 98232049 C A CHD1 Nonsense_Mutation p.G531* 0.29 TCGA-ER-A194-01 6 100368843 100368843 C T MCHR2 Missense_Mutation p.M332I 0.29 tolerated(1) benign(0) TCGA-ER-A194-01 6 107076961 107076961 C T RTN4IP1 5'UTR 0.42 TCGA-ER-A194-01 6 107076962 107076962 C T RTN4IP1 5'UTR 0.38 TCGA-ER-A194-01 6 107391735 107391735 G A BEND3 Silent p.L220L 0.24 TCGA-ER-A194-01 6 10924846 10924846 C T SYCP2L Missense_Mutation p.S397F 0.39 deleterious(0.02) probably_damaging(0.975) TCGA-ER-A194-01 6 116264264 116264264 T C FRK Missense_Mutation p.K409E 0.30 deleterious(0.03) possibly_damaging(0.515) TCGA-ER-A194-01 6 117706953 117706953 C T ROS1 Missense_Mutation p.G733R 0.29 tolerated(0.17) benign(0.014) TCGA-ER-A194-01 6 119510900 119510900 C T MAN1A1 Missense_Mutation p.G492D 0.32 tolerated(1) benign(0.001) TCGA-ER-A194-01 6 12164175 12164175 C T HIVEP1 Silent p.I2546I 0.18 TCGA-ER-A194-01 6 132029932 132029932 G A CTAGE9 Silent p.F742F 0.35 TCGA-ER-A194-01 6 132171137 132171137 T C ENPP1 Silent p.S107S 0.42 TCGA-ER-A194-01 6 133595908 133595908 G A EYA4 5'UTR 0.35 TCGA-ER-A194-01 6 139591716 139591716 C G TXLNB Missense_Mutation p.K188N 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-ER-A194-01 6 139694143 139694143 T G CITED2 3'UTR 0.60 TCGA-ER-A194-01 6 143081249 143081249 G A HIVEP2 Missense_Mutation p.S2059L 0.35 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 6 143795941 143795941 C T PEX3 Nonsense_Mutation p.R256* 0.33 TCGA-ER-A194-01 6 150710649 150710649 G C IYD Missense_Mutation p.E114Q 0.25 deleterious(0.04) benign(0.436) TCGA-ER-A194-01 6 152470621 152470621 G A SYNE1 Silent p.I8211I 0.33 TCGA-ER-A194-01 6 152737871 152737871 C T SYNE1 Missense_Mutation p.E1901K 0.26 benign(0) TCGA-ER-A194-01 6 152768620 152768620 G A SYNE1 Silent p.F1214F 0.28 TCGA-ER-A194-01 6 152804247 152804247 C T SYNE1 Silent p.T441T 0.21 TCGA-ER-A194-01 6 154412121 154412121 A C OPRM1 Silent p.P319P 0.28 TCGA-ER-A194-01 6 154520815 154520815 C T IPCEF1 Silent p.K299K 0.16 TCGA-ER-A194-01 6 155500260 155500260 G A TIAM2 Missense_Mutation p.E871K 0.30 deleterious(0.02) possibly_damaging(0.493) TCGA-ER-A194-01 6 155764464 155764464 G A NOX3 Silent p.S143S 0.22 TCGA-ER-A194-01 6 158093791 158093791 C T ZDHHC14 Silent p.F368F 0.45 TCGA-ER-A194-01 6 159653205 159653205 T A FNDC1 Missense_Mutation p.M554K 0.30 tolerated_low_confidence(0.06) unknown(0) TCGA-ER-A194-01 6 159653325 159653325 G A FNDC1 Missense_Mutation p.R594K 0.46 tolerated_low_confidence(1) unknown(0) TCGA-ER-A194-01 6 159654399 159654399 T C FNDC1 Missense_Mutation p.V952A 0.24 tolerated_low_confidence(0.3) unknown(0) TCGA-ER-A194-01 6 161007581 161007581 C T LPA Nonsense_Mutation p.W1343* 0.35 TCGA-ER-A194-01 6 167424307 167424307 C T FGFR1OP Missense_Mutation p.L149F 0.21 tolerated(0.46) benign(0.013) TCGA-ER-A194-01 6 169641872 169641872 C T THBS2 Silent p.E292E 0.22 TCGA-ER-A194-01 6 169648930 169648930 G A THBS2 Missense_Mutation p.P64L 0.34 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A194-01 6 170593060 170593060 G A DLL1 Missense_Mutation p.S436L 0.40 deleterious(0) benign(0.16) TCGA-ER-A194-01 6 170627021 170627021 T G FAM120B Missense_Mutation p.D181E 0.26 deleterious(0) probably_damaging(0.978) TCGA-ER-A194-01 6 17799553 17799553 C T KIF13A Missense_Mutation p.V912M 0.09 tolerated(0.29) benign(0.04) TCGA-ER-A194-01 6 24450048 24450048 G A GPLD1 Missense_Mutation p.P472L 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 6 24454285 24454285 C T GPLD1 Silent p.L431L 0.18 TCGA-ER-A194-01 6 24563628 24563628 C T KIAA0319 Silent p.S850S 0.34 TCGA-ER-A194-01 6 24651099 24651099 G A TDP2 Missense_Mutation p.L336F 0.25 tolerated(0.07) probably_damaging(0.967) TCGA-ER-A194-01 6 26446099 26446099 C T BTN3A3 Silent p.L201L 0.20 TCGA-ER-A194-01 6 28474134 28474134 C T GPX6 Missense_Mutation p.G105E 0.42 deleterious(0) probably_damaging(0.964) TCGA-ER-A194-01 6 28543161 28543161 C T SCAND3 Missense_Mutation p.E441K 0.29 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-ER-A194-01 6 29012883 29012883 C T OR2W1 Missense_Mutation p.E24K 0.43 deleterious(0) probably_damaging(0.997) TCGA-ER-A194-01 6 29141683 29141683 A T OR2J2 Nonsense_Mutation p.K91* 0.23 TCGA-ER-A194-01 6 29275343 29275343 G A OR14J1 Missense_Mutation p.D293N 0.21 deleterious(0.02) benign(0.039) TCGA-ER-A194-01 6 29430347 29430347 G A OR2H1 Silent p.G267G 0.15 TCGA-ER-A194-01 6 30029353 30029353 G A ZNRD1 Missense_Mutation p.D18N 0.19 tolerated(0.39) benign(0.162) TCGA-ER-A194-01 6 30043420 30043420 C T RNF39 Silent p.A49A 0.17 TCGA-ER-A194-01 6 30131448 30131448 G A TRIM15 5'UTR 0.38 TCGA-ER-A194-01 6 30131682 30131682 C T TRIM15 Missense_Mutation p.P74L 0.18 tolerated(0.05) benign(0.042) TCGA-ER-A194-01 6 30136134 30136134 G A TRIM15 Missense_Mutation p.E179K 0.28 tolerated(0.2) benign(0.206) TCGA-ER-A194-01 6 30140173 30140173 G A TRIM15 3'UTR 0.21 TCGA-ER-A194-01 6 30954011 30954011 C T MUC21 Intron 0.16 TCGA-ER-A194-01 6 31083689 31083689 G A CDSN 3'UTR 0.47 TCGA-ER-A194-01 6 31378334 31378334 C T MICA Missense_Mutation p.R29C 0.22 tolerated(0.26) benign(0.061) TCGA-ER-A194-01 6 31473645 31473645 G A MICB Missense_Mutation p.G108R 0.79 tolerated(0.21) possibly_damaging(0.762) TCGA-ER-A194-01 6 31685450 31685450 C T LY6G6D Missense_Mutation p.P91S 0.19 tolerated(0.07) benign(0) TCGA-ER-A194-01 6 31691504 31691504 C T C6orf25 Silent p.F50F 0.24 TCGA-ER-A194-01 6 31698746 31698746 G A CLIC1 Missense_Mutation p.P200L 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 6 31733693 31733693 G A VWA7 Silent p.F822F 0.18 TCGA-ER-A194-01 6 31736926 31736926 C T VWA7 Missense_Mutation p.E458K 0.18 tolerated(0.09) possibly_damaging(0.69) TCGA-ER-A194-01 6 31838414 31838414 G A SLC44A4 Missense_Mutation p.R335C 0.23 tolerated(0.19) benign(0.035) TCGA-ER-A194-01 6 31926888 31926888 C T SKIV2L 5'UTR 0.19 TCGA-ER-A194-01 6 31962059 31962059 C T C4A Silent p.F830F 0.11 TCGA-ER-A194-01 6 31997540 31997540 C T C4B Nonsense_Mutation p.Q1292* 0.20 TCGA-ER-A194-01 6 32021274 32021274 C T TNXB Silent p.E2892E 0.19 TCGA-ER-A194-01 6 32138678 32138678 T G AGPAT1 Intron 0.17 TCGA-ER-A194-01 6 32184818 32184818 C T NOTCH4 Missense_Mutation p.E589K 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-ER-A194-01 6 32190842 32190842 G A NOTCH4 Missense_Mutation p.P32L 0.20 deleterious(0.03) benign(0.025) TCGA-ER-A194-01 6 32487202 32487202 A G HLA-DRB5 Silent p.V199V 0.40 TCGA-ER-A194-01 6 335148 335148 C T DUSP22 Missense_Mutation p.S58L 0.12 tolerated(0.1) benign(0.003) TCGA-ER-A194-01 6 33694681 33694681 G A IP6K3 Missense_Mutation p.P139L 0.17 tolerated(0.2) benign(0.107) TCGA-ER-A194-01 6 34497502 34497502 G A PACSIN1 Missense_Mutation p.M224I 0.42 tolerated(0.18) benign(0.001) TCGA-ER-A194-01 6 35436199 35436199 G A RPL10A 5'UTR 0.34 TCGA-ER-A194-01 6 35610568 35610568 C T FKBP5 Missense_Mutation p.E12K 0.20 tolerated(0.64) benign(0.001) TCGA-ER-A194-01 6 41738772 41738772 G A FRS3 Missense_Mutation p.P355L 0.50 deleterious(0.02) probably_damaging(1) TCGA-ER-A194-01 6 42236589 42236589 C T TRERF1 Missense_Mutation p.G247E 0.12 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-ER-A194-01 6 44197655 44197655 C T SLC29A1 Missense_Mutation p.S109F 0.21 deleterious(0.02) benign(0.212) TCGA-ER-A194-01 6 45917016 45917016 C T CLIC5 Silent p.L251L 0.11 TCGA-ER-A194-01 6 46801057 46801057 G A MEP1A Missense_Mutation p.G464E 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 6 51920487 51920487 C T PKHD1 Silent p.G578G 0.18 TCGA-ER-A194-01 6 52615459 52615459 C T GSTA2 Silent p.K195K 0.21 TCGA-ER-A194-01 6 54208096 54208096 G A TINAG Missense_Mutation p.G233S 0.33 tolerated(0.1) benign(0.027) TCGA-ER-A194-01 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.41 deleterious(0) probably_damaging(0.934) TCGA-ER-A194-01 6 55264042 55264042 C T GFRAL Silent p.I339I 0.26 TCGA-ER-A194-01 6 599121 599121 G A EXOC2 Missense_Mutation p.L283F 0.13 deleterious(0.03) probably_damaging(0.969) TCGA-ER-A194-01 6 6002686 6002686 C T NRN1 Missense_Mutation p.V34I 0.22 tolerated(0.27) benign(0.301) TCGA-ER-A194-01 6 62604712 62604712 G A KHDRBS2 Missense_Mutation p.P213L 0.22 tolerated(0.09) benign(0.212) TCGA-ER-A194-01 6 6589013 6589013 C T LY86 Missense_Mutation p.P16S 0.20 tolerated(0.05) benign(0.084) TCGA-ER-A194-01 6 69348921 69348921 C T BAI3 Silent p.F118F 0.25 TCGA-ER-A194-01 6 7229506 7229506 C T RREB1 Nonsense_Mutation p.Q392* 0.41 TCGA-ER-A194-01 6 72970443 72970443 G A RIMS1 Missense_Mutation p.R1030Q 0.25 tolerated(0.35) probably_damaging(0.992) TCGA-ER-A194-01 6 7373653 7373653 C T CAGE1 Missense_Mutation p.A467T 0.24 tolerated(1) benign(0.144) TCGA-ER-A194-01 6 74519768 74519768 C T CD109 Silent p.S1139S 0.43 TCGA-ER-A194-01 6 7580725 7580725 G A DSP Silent p.K1434K 0.20 TCGA-ER-A194-01 6 7601599 7601599 C T SNRNP48 Missense_Mutation p.P146L 0.23 deleterious(0) probably_damaging(0.98) TCGA-ER-A194-01 6 86181124 86181124 C T NT5E Silent p.S244S 0.36 TCGA-ER-A194-01 6 96651560 96651560 C T FUT9 Missense_Mutation p.P177S 0.45 tolerated(0.63) benign(0.002) TCGA-ER-A194-01 7 100240785 100240785 G A ACTL6B 3'UTR 0.29 TCGA-ER-A194-01 7 100350390 100350390 C T ZAN Missense_Mutation p.P888S 0.35 unknown(0) TCGA-ER-A194-01 7 100675421 100675421 G A MUC17 Missense_Mutation p.E242K 0.30 benign(0.008) TCGA-ER-A194-01 7 100677635 100677635 G A MUC17 Missense_Mutation p.E980K 0.31 possibly_damaging(0.78) TCGA-ER-A194-01 7 100682579 100682579 C T MUC17 Missense_Mutation p.P2628S 0.27 benign(0.432) TCGA-ER-A194-01 7 100685526 100685526 C T MUC17 Missense_Mutation p.S3610F 0.27 benign(0.083) TCGA-ER-A194-01 7 101839972 101839972 G C CUX1 Silent p.P438P 0.32 TCGA-ER-A194-01 7 102604026 102604026 C T FBXL13 Silent p.L226L 0.26 TCGA-ER-A194-01 7 103131239 103131239 G A RELN Missense_Mutation p.P3161S 0.27 deleterious(0) benign(0.034) TCGA-ER-A194-01 7 103969529 103969529 C T LHFPL3 Missense_Mutation p.P101L 0.26 tolerated(0.13) probably_damaging(0.999) TCGA-ER-A194-01 7 106509428 106509428 C T PIK3CG Silent p.L474L 0.30 TCGA-ER-A194-01 7 106509951 106509951 G A PIK3CG Missense_Mutation p.E649K 0.38 tolerated(0.12) benign(0.171) TCGA-ER-A194-01 7 11101606 11101606 G A PHF14 Missense_Mutation p.E850K 0.46 deleterious(0.02) probably_damaging(0.98) TCGA-ER-A194-01 7 116937775 116937775 C T WNT2 Silent p.Q248Q 0.24 TCGA-ER-A194-01 7 117171163 117171163 A T CFTR Nonsense_Mutation p.K162* 0.29 TCGA-ER-A194-01 7 120428772 120428772 C T TSPAN12 Silent p.K264K 0.29 TCGA-ER-A194-01 7 120609246 120609246 G T ING3 Missense_Mutation p.G299V 0.31 tolerated(0.33) possibly_damaging(0.476) TCGA-ER-A194-01 7 120609248 120609248 C T ING3 Nonsense_Mutation p.R300* 0.31 TCGA-ER-A194-01 7 122033369 122033369 C T CADPS2 Silent p.K963K 0.31 TCGA-ER-A194-01 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.29 tolerated(1) benign(0.03) TCGA-ER-A194-01 7 126173490 126173490 G A GRM8 Missense_Mutation p.S649F 0.40 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 7 128494210 128494210 G A FLNC Missense_Mutation p.G2223R 0.19 deleterious(0) possibly_damaging(0.723) TCGA-ER-A194-01 7 128587827 128587827 C T IRF5 Missense_Mutation p.R278W 0.39 tolerated(0.19) possibly_damaging(0.701) TCGA-ER-A194-01 7 129120720 129120720 C T STRIP2 Missense_Mutation p.S680F 0.27 deleterious(0) probably_damaging(0.996) TCGA-ER-A194-01 7 131844304 131844304 C T PLXNA4 Missense_Mutation p.E1530K 0.24 deleterious(0.01) possibly_damaging(0.85) TCGA-ER-A194-01 7 134261147 134261147 G C AKR1B15 Missense_Mutation p.E264Q 0.20 tolerated(0.17) benign(0.131) TCGA-ER-A194-01 7 137531214 137531214 G A DGKI Missense_Mutation p.S132L 0.22 tolerated(0.09) benign(0.019) TCGA-ER-A194-01 7 137798460 137798460 G A AKR1D1 Missense_Mutation p.E294K 0.27 deleterious(0.05) benign(0.006) TCGA-ER-A194-01 7 138189046 138189046 C T TRIM24 Missense_Mutation p.R126C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 7 141618826 141618826 G A OR9A4 Missense_Mutation p.D51N 0.32 deleterious(0.03) benign(0.216) TCGA-ER-A194-01 7 141635733 141635733 C T CLEC5A Missense_Mutation p.E76K 0.31 tolerated(0.36) benign(0.003) TCGA-ER-A194-01 7 141736640 141736640 C T MGAM Silent p.S698S 0.24 TCGA-ER-A194-01 7 141747584 141747584 G A MGAM Splice_Site p.X833_splice 0.25 TCGA-ER-A194-01 7 142045742 142045742 C T TRBV4-2 Silent p.S90S 0.15 TCGA-ER-A194-01 7 142099725 142099725 G A TRBV7-8 Missense_Mutation p.S26F 0.32 tolerated(0.16) benign(0.014) TCGA-ER-A194-01 7 142104120 142104120 G A TRBV6-9 3'Flank 0.31 TCGA-ER-A194-01 7 142149378 142149378 G A TRBV5-5 Silent p.L5L 0.24 TCGA-ER-A194-01 7 142326549 142326549 C T TRBV19 5'UTR 0.20 TCGA-ER-A194-01 7 142561409 142561409 G A EPHB6 Missense_Mutation p.G41R 0.14 tolerated(0.48) benign(0.413) TCGA-ER-A194-01 7 142561410 142561410 G A EPHB6 Missense_Mutation p.G41E 0.13 tolerated(0.99) benign(0.326) TCGA-ER-A194-01 7 142568001 142568001 C T EPHB6 Missense_Mutation p.P881L 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 7 142612060 142612060 C T TRPV5 Missense_Mutation p.M481I 0.17 deleterious(0) possibly_damaging(0.85) TCGA-ER-A194-01 7 142612657 142612657 G A TRPV5 Silent p.L402L 0.28 TCGA-ER-A194-01 7 142640920 142640920 G A KEL Silent p.S514S 0.22 TCGA-ER-A194-01 7 142641814 142641814 G A KEL Silent p.F443F 0.24 TCGA-ER-A194-01 7 142655026 142655026 G A KEL Missense_Mutation p.S187F 0.31 tolerated(0.34) benign(0.012) TCGA-ER-A194-01 7 142723761 142723761 G A OR9A2 Silent p.I153I 0.28 TCGA-ER-A194-01 7 142881294 142881294 C T TAS2R39 Silent p.I261I 0.25 TCGA-ER-A194-01 7 143018899 143018899 C T CLCN1 Silent p.A218A 0.26 TCGA-ER-A194-01 7 143417196 143417196 G A FAM115C Silent p.Q348Q 0.23 TCGA-ER-A194-01 7 143657228 143657228 C T OR2F1 Silent p.L55L 0.29 TCGA-ER-A194-01 7 143657478 143657478 G A OR2F1 Missense_Mutation p.G139R 0.26 tolerated(1) benign(0.015) TCGA-ER-A194-01 7 143882729 143882729 G A CTAGE4 Silent p.R711R 0.25 TCGA-ER-A194-01 7 14620490 14620490 C T DGKB Missense_Mutation p.G537R 0.22 deleterious(0.03) probably_damaging(0.942) TCGA-ER-A194-01 7 148514333 148514333 C T EZH2 Missense_Mutation p.G464E 0.16 tolerated(0.3) benign(0.007) TCGA-ER-A194-01 7 149152619 149152620 AG - ZNF777 Frame_Shift_Del p.P165Lfs*52 0.20 TCGA-ER-A194-01 7 149520932 149520932 G A SSPO RNA 0.42 TCGA-ER-A194-01 7 150217597 150217597 G A GIMAP7 Missense_Mutation p.E179K 0.29 deleterious(0.04) possibly_damaging(0.768) TCGA-ER-A194-01 7 150267087 150267087 G A GIMAP4 Intron 0.18 TCGA-ER-A194-01 7 150327167 150327167 G A GIMAP6 Missense_Mutation p.P22S 0.27 tolerated(0.17) benign(0.005) TCGA-ER-A194-01 7 150390257 150390257 T A GIMAP2 Missense_Mutation p.C295S 0.19 deleterious(0.05) possibly_damaging(0.666) TCGA-ER-A194-01 7 150439756 150439756 G A GIMAP5 Missense_Mutation p.V177M 0.36 deleterious(0.01) possibly_damaging(0.892) TCGA-ER-A194-01 7 150490280 150490280 G A TMEM176B Missense_Mutation p.R166C 0.30 tolerated(0.2) benign(0.002) TCGA-ER-A194-01 7 150817200 150817200 A G AGAP3 Missense_Mutation p.K366E 0.27 deleterious(0.01) possibly_damaging(0.883) TCGA-ER-A194-01 7 151791477 151791477 C T GALNT11 Silent p.F55F 0.37 TCGA-ER-A194-01 7 151860809 151860809 G A KMT2C Nonsense_Mutation p.Q3285* 0.19 TCGA-ER-A194-01 7 151970854 151970854 G A KMT2C Silent p.T316T 0.05 TCGA-ER-A194-01 7 1522302 1522302 G A INTS1 Missense_Mutation p.P1195S 0.27 deleterious(0) probably_damaging(0.951) TCGA-ER-A194-01 7 1542573 1542573 G A INTS1 Missense_Mutation p.P105S 0.28 tolerated(0.15) benign(0.168) TCGA-ER-A194-01 7 155604733 155604733 C T SHH Silent p.R28R 0.24 TCGA-ER-A194-01 7 157341706 157341706 T C PTPRN2 Silent p.K970K 0.25 TCGA-ER-A194-01 7 157959761 157959761 G A PTPRN2 Missense_Mutation p.P258S 0.25 tolerated(0.41) benign(0.002) TCGA-ER-A194-01 7 18801810 18801810 G A HDAC9 Missense_Mutation p.E692K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A194-01 7 21781647 21781647 C T DNAH11 Missense_Mutation p.P2680S 0.28 benign(0.274) TCGA-ER-A194-01 7 22206747 22206747 G A RAPGEF5 Silent p.F255F 0.19 TCGA-ER-A194-01 7 23385559 23385559 G A IGF2BP3 Missense_Mutation p.P314L 0.22 tolerated(0.07) benign(0.122) TCGA-ER-A194-01 7 23571493 23571493 G A TRA2A 5'UTR 0.30 TCGA-ER-A194-01 7 24663366 24663366 G A MPP6 Missense_Mutation p.G27E 0.18 deleterious(0) probably_damaging(0.939) TCGA-ER-A194-01 7 25194660 25194660 C T C7orf31 Missense_Mutation p.A189T 0.39 tolerated(0.25) benign(0.015) TCGA-ER-A194-01 7 29111997 29111997 G A CPVL Missense_Mutation p.H218Y 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A194-01 7 30694695 30694695 C T CRHR2 Missense_Mutation p.G379D 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 7 30694696 30694696 C T CRHR2 Missense_Mutation p.G379S 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 7 31917638 31917638 C T PDE1C Missense_Mutation p.R206Q 0.26 deleterious(0) possibly_damaging(0.895) TCGA-ER-A194-01 7 34192895 34192895 C T BMPER 3'UTR 0.25 TCGA-ER-A194-01 7 38289078 38289078 G A TRGC2 Missense_Mutation p.L33F 0.26 deleterious(0.01) probably_damaging(0.91) TCGA-ER-A194-01 7 40900030 40900030 C T SUGCT Silent p.I456I 0.23 TCGA-ER-A194-01 7 43594360 43594360 G T HECW1 Missense_Mutation p.E1560D 0.22 deleterious(0.04) possibly_damaging(0.504) TCGA-ER-A194-01 7 44187426 44187426 C T GCK Missense_Mutation p.G230D 0.27 deleterious(0) probably_damaging(0.995) TCGA-ER-A194-01 7 44555466 44555466 G A NPC1L1 Silent p.L1271L 0.24 TCGA-ER-A194-01 7 44560646 44560646 G A NPC1L1 Missense_Mutation p.H1009Y 0.25 tolerated(0.18) benign(0.001) TCGA-ER-A194-01 7 45930215 45930215 C T IGFBP1 Silent p.L140L 0.25 TCGA-ER-A194-01 7 50660663 50660663 G A GRB10 Nonsense_Mutation p.R591* 0.20 TCGA-ER-A194-01 7 51096710 51096710 G A COBL Missense_Mutation p.P695S 0.32 tolerated(0.91) benign(0.007) TCGA-ER-A194-01 7 54617644 54617644 G A VSTM2A Missense_Mutation p.E139K 0.20 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 7 55863673 55863673 G C SEPT14 Missense_Mutation p.A411G 0.26 deleterious(0.01) possibly_damaging(0.697) TCGA-ER-A194-01 7 62752402 62752402 C T ZNF733P RNA 0.41 TCGA-ER-A194-01 7 63709527 63709527 G A ZNF679 Missense_Mutation p.R11Q 0.26 tolerated(0.57) benign(0.213) TCGA-ER-A194-01 7 71130513 71130513 C T WBSCR17 Missense_Mutation p.R400C 0.24 deleterious(0) probably_damaging(0.985) TCGA-ER-A194-01 7 72413369 72413369 C T POM121 Missense_Mutation p.P681L 0.12 deleterious(0.02) possibly_damaging(0.725) TCGA-ER-A194-01 7 73117299 73117299 G A STX1A Missense_Mutation p.S185F 0.32 deleterious(0) possibly_damaging(0.889) TCGA-ER-A194-01 7 73151288 73151288 A G ABHD11 Silent p.F262F 0.24 TCGA-ER-A194-01 7 73944162 73944162 C T GTF2IRD1 Missense_Mutation p.P429S 0.20 deleterious(0.02) possibly_damaging(0.472) TCGA-ER-A194-01 7 76126736 76126736 C T DTX2 Silent p.S364S 0.16 TCGA-ER-A194-01 7 76958673 76958673 C T GSAP Silent p.R570R 0.11 TCGA-ER-A194-01 7 77755026 77755026 C T MAGI2 Silent p.R1184R 0.32 TCGA-ER-A194-01 7 77973101 77973101 C T MAGI2 Missense_Mutation p.E468K 0.31 tolerated(0.08) possibly_damaging(0.584) TCGA-ER-A194-01 7 82390765 82390765 C T PCLO Missense_Mutation p.E5018K 0.32 unknown(0) TCGA-ER-A194-01 7 82451749 82451749 G A PCLO Intron 0.22 TCGA-ER-A194-01 7 82544719 82544719 G A PCLO Silent p.L4195L 0.25 TCGA-ER-A194-01 7 82581216 82581216 C T PCLO Missense_Mutation p.G3018E 0.25 unknown(0) TCGA-ER-A194-01 7 84636176 84636176 G A SEMA3D Missense_Mutation p.S617F 0.30 deleterious(0.01) probably_damaging(1) TCGA-ER-A194-01 7 87150164 87150164 C T ABCB1 Missense_Mutation p.R905Q 0.30 deleterious(0) probably_damaging(0.952) TCGA-ER-A194-01 7 87175328 87175328 G A ABCB1 Missense_Mutation p.R580W 0.29 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 7 87399899 87399899 C T RUNDC3B Missense_Mutation p.S228F 0.47 tolerated(0.57) benign(0.194) TCGA-ER-A194-01 7 87483547 87483547 T C SLC25A40 Missense_Mutation p.K79R 0.22 tolerated(0.22) benign(0.036) TCGA-ER-A194-01 7 92732584 92732584 C T SAMD9 Missense_Mutation p.G943R 0.31 deleterious(0) possibly_damaging(0.85) TCGA-ER-A194-01 7 92763946 92763946 C T SAMD9L Missense_Mutation p.D447N 0.27 deleterious(0) probably_damaging(0.965) TCGA-ER-A194-01 7 97941458 97941458 G A BAIAP2L1 Missense_Mutation p.P253L 0.30 deleterious(0) probably_damaging(0.963) TCGA-ER-A194-01 7 99506319 99506319 C T TRIM4 Silent p.T228T 0.28 TCGA-ER-A194-01 7 99913409 99913409 G A SPDYE3 Silent p.E401E 0.27 TCGA-ER-A194-01 7 99913410 99913410 G A SPDYE3 Missense_Mutation p.D402N 0.27 deleterious(0.04) possibly_damaging(0.787) TCGA-ER-A194-01 8 100128015 100128015 C T VPS13B Missense_Mutation p.L284F 0.22 deleterious(0) possibly_damaging(0.587) TCGA-ER-A194-01 8 100454707 100454707 C T VPS13B Missense_Mutation p.P1097S 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-ER-A194-01 8 103238255 103238255 A T RRM2B Nonsense_Mutation p.L71* 0.38 TCGA-ER-A194-01 8 103291376 103291376 G A UBR5 Missense_Mutation p.P2021L 0.16 tolerated(0.06) probably_damaging(0.966) TCGA-ER-A194-01 8 103855912 103855912 A G AZIN1 5'UTR 0.31 TCGA-ER-A194-01 8 103855914 103855914 A C AZIN1 5'UTR 0.32 TCGA-ER-A194-01 8 10468395 10468395 G A RP1L1 Silent p.S1071S 0.17 TCGA-ER-A194-01 8 10480106 10480106 T G RP1L1 Missense_Mutation p.K202N 0.28 probably_damaging(0.993) TCGA-ER-A194-01 8 106813815 106813815 C T ZFPM2 Missense_Mutation p.S502F 0.19 deleterious(0.03) benign(0.109) TCGA-ER-A194-01 8 106814475 106814475 C T ZFPM2 Missense_Mutation p.A722V 0.21 tolerated(0.32) possibly_damaging(0.504) TCGA-ER-A194-01 8 110510723 110510723 T C PKHD1L1 Silent p.F3544F 0.18 TCGA-ER-A194-01 8 110576942 110576942 C T EBAG9 3'UTR 0.33 TCGA-ER-A194-01 8 110984751 110984751 C T KCNV1 Missense_Mutation p.E243K 0.30 tolerated(0.9) benign(0.054) TCGA-ER-A194-01 8 114389010 114389010 G A CSMD3 Intron 0.25 TCGA-ER-A194-01 8 12879555 12879555 T A KIAA1456 3'UTR 0.30 TCGA-ER-A194-01 8 12879556 12879556 G T KIAA1456 3'UTR 0.32 TCGA-ER-A194-01 8 131792960 131792960 G A ADCY8 Silent p.G1144G 0.34 TCGA-ER-A194-01 8 133141785 133141785 G T KCNQ3 Missense_Mutation p.S781R 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-ER-A194-01 8 133899415 133899415 G A TG Missense_Mutation p.E600K 0.24 tolerated(0.83) benign(0.124) TCGA-ER-A194-01 8 134258865 134258865 G A NDRG1 Silent p.L283L 0.26 TCGA-ER-A194-01 8 139153511 139153511 G A FAM135B Silent p.L1240L 0.35 TCGA-ER-A194-01 8 140630432 140630432 G A KCNK9 3'UTR 0.28 TCGA-ER-A194-01 8 142190941 142190941 C T DENND3 Missense_Mutation p.L898F 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A194-01 8 142204176 142204176 G A DENND3 Silent p.G1147G 0.24 TCGA-ER-A194-01 8 142367831 142367831 G A GPR20 Silent p.L65L 0.45 TCGA-ER-A194-01 8 143623549 143623549 C T BAI1 Silent p.S1318S 0.29 TCGA-ER-A194-01 8 143784508 143784508 G A LY6K Splice_Site p.X73_splice 0.37 TCGA-ER-A194-01 8 144946926 144946926 C T EPPK1 Missense_Mutation p.G166R 0.31 probably_damaging(0.939) TCGA-ER-A194-01 8 145741395 145741395 G A RECQL4 Missense_Mutation p.R370C 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 8 19679948 19679948 A T INTS10 Splice_Site p.X148_splice 0.17 TCGA-ER-A194-01 8 20022610 20022610 C T SLC18A1 Silent p.K289K 0.31 TCGA-ER-A194-01 8 22390488 22390488 C T PPP3CC Silent p.L435L 0.21 TCGA-ER-A194-01 8 24324492 24324492 C T ADAM7 Silent p.S190S 0.26 TCGA-ER-A194-01 8 24813348 24813348 C T CTD-2168K21.2 5'Flank 0.32 TCGA-ER-A194-01 8 25899713 25899713 C T EBF2 Silent p.R62R 0.19 TCGA-ER-A194-01 8 27462613 27462613 G A CLU Silent p.F219F 0.20 TCGA-ER-A194-01 8 28210782 28210782 C T ZNF395 Missense_Mutation p.G243R 0.34 tolerated(0.11) probably_damaging(0.951) TCGA-ER-A194-01 8 2855624 2855624 G A CSMD1 Silent p.F2762F 0.27 TCGA-ER-A194-01 8 30706118 30706118 G A TEX15 Missense_Mutation p.P139L 0.28 tolerated(0.13) benign(0.032) TCGA-ER-A194-01 8 32620868 32620868 C T NRG1 Intron 0.25 TCGA-ER-A194-01 8 38700881 38700881 C T TACC1 Silent p.A732A 0.31 TCGA-ER-A194-01 8 39505881 39505881 G A ADAM18 Silent p.K355K 0.28 TCGA-ER-A194-01 8 39645692 39645692 C T ADAM2 Missense_Mutation p.G241R 0.31 deleterious(0) probably_damaging(0.982) TCGA-ER-A194-01 8 39695724 39695724 C T ADAM2 5'UTR 0.17 TCGA-ER-A194-01 8 40554769 40554769 G A ZMAT4 Missense_Mutation p.T115I 0.24 tolerated(0.09) benign(0.051) TCGA-ER-A194-01 8 41557023 41557023 C T ANK1 Silent p.R876R 0.24 TCGA-ER-A194-01 8 42585803 42585803 C T CHRNB3 Missense_Mutation p.P106S 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 8 42587027 42587027 A T CHRNB3 Nonsense_Mutation p.K193* 0.39 TCGA-ER-A194-01 8 51571217 51571217 C T SNTG1 Silent p.I344I 0.20 TCGA-ER-A194-01 8 55534024 55534024 G A RP1 Silent p.T166T 0.25 TCGA-ER-A194-01 8 55538333 55538333 G A RP1 Missense_Mutation p.A631T 0.32 tolerated(0.28) benign(0.014) TCGA-ER-A194-01 8 55541939 55541939 G C RP1 Missense_Mutation p.D1833H 0.33 deleterious(0) possibly_damaging(0.875) TCGA-ER-A194-01 8 56436222 56436222 G A XKR4 Silent p.V463V 0.27 TCGA-ER-A194-01 8 57358459 57358459 G A PENK Silent p.L18L 0.37 TCGA-ER-A194-01 8 61765107 61765107 G A CHD7 Missense_Mutation p.G1982E 0.31 probably_damaging(0.999) TCGA-ER-A194-01 8 62212586 62212586 G A CLVS1 Missense_Mutation p.G67E 0.20 tolerated(0.14) benign(0.241) TCGA-ER-A194-01 8 67066489 67066489 G A TRIM55 Missense_Mutation p.A482T 0.15 tolerated_low_confidence(0.1) possibly_damaging(0.585) TCGA-ER-A194-01 8 68981315 68981315 C T PREX2 Missense_Mutation p.R463C 0.30 deleterious(0) probably_damaging(0.995) TCGA-ER-A194-01 8 69129923 69129923 C T PREX2 Silent p.I1559I 0.45 TCGA-ER-A194-01 8 70617400 70617400 C T SLCO5A1 Silent p.L496L 0.26 TCGA-ER-A194-01 8 71619283 71619283 G A XKR9 Missense_Mutation p.D130N 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 8 77618367 77618367 C T ZFHX4 Missense_Mutation p.P682S 0.24 possibly_damaging(0.803) TCGA-ER-A194-01 8 77767364 77767364 C T ZFHX4 Missense_Mutation p.P2736L 0.33 possibly_damaging(0.736) TCGA-ER-A194-01 8 86360402 86360402 C T CA3 3'UTR 0.29 TCGA-ER-A194-01 8 88886004 88886004 G A DCAF4L2 Missense_Mutation p.P66S 0.35 tolerated(1) benign(0.011) TCGA-ER-A194-01 8 93003922 93003922 C T RUNX1T1 Silent p.R323R 0.27 TCGA-ER-A194-01 8 95172263 95172263 C T CDH17 Missense_Mutation p.S496N 0.34 tolerated(0.15) benign(0.022) TCGA-ER-A194-01 8 95172282 95172282 G A CDH17 Missense_Mutation p.H490Y 0.21 deleterious(0.02) benign(0.433) TCGA-ER-A194-01 9 100194381 100194381 C T TDRD7 Missense_Mutation p.P142S 0.21 tolerated(0.62) benign(0.005) TCGA-ER-A194-01 9 100194382 100194382 C T TDRD7 Missense_Mutation p.P142L 0.21 tolerated(0.75) benign(0.001) TCGA-ER-A194-01 9 103212888 103212888 C T MSANTD3 Silent p.F156F 0.24 TCGA-ER-A194-01 9 104075196 104075196 G T LPPR1 Silent p.R251R 0.22 TCGA-ER-A194-01 9 104193083 104193083 C T ALDOB Silent p.G29G 0.28 TCGA-ER-A194-01 9 105767634 105767634 G A CYLC2 Missense_Mutation p.E241K 0.20 tolerated(0.62) unknown(0) TCGA-ER-A194-01 9 107298427 107298427 G A OR13C3 Missense_Mutation p.S223F 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-ER-A194-01 9 107380372 107380372 G A OR13C9 Silent p.I38I 0.14 TCGA-ER-A194-01 9 108380335 108380335 C T FKTN Nonsense_Mutation p.Q336* 0.38 TCGA-ER-A194-01 9 111625419 111625419 G A ACTL7A Missense_Mutation p.E273K 0.32 tolerated(0.12) possibly_damaging(0.793) TCGA-ER-A194-01 9 112694261 112694261 G A PALM2-AKAP2 Missense_Mutation p.R150Q 0.30 tolerated(0.59) benign(0.05) TCGA-ER-A194-01 9 113141782 113141782 G A SVEP1 Missense_Mutation p.P3418L 0.22 benign(0.042) TCGA-ER-A194-01 9 113141783 113141783 G A SVEP1 Missense_Mutation p.P3418S 0.23 possibly_damaging(0.672) TCGA-ER-A194-01 9 114135609 114135609 C T KIAA0368 Missense_Mutation p.G1597S 0.25 deleterious(0) probably_damaging(0.998) TCGA-ER-A194-01 9 114304474 114304474 C T ZNF483 Missense_Mutation p.S420L 0.32 tolerated(0.88) benign(0.307) TCGA-ER-A194-01 9 115024768 115024768 G A PTBP3 Nonsense_Mutation p.R189* 0.26 TCGA-ER-A194-01 9 115818872 115818872 C T ZFP37 Missense_Mutation p.E33K 0.24 tolerated(0.31) benign(0.058) TCGA-ER-A194-01 9 116085403 116085403 G A WDR31 Silent p.F119F 0.32 TCGA-ER-A194-01 9 116122940 116122940 G A BSPRY Missense_Mutation p.E152K 0.27 deleterious(0.05) benign(0.296) TCGA-ER-A194-01 9 117063403 117063403 C T COL27A1 Missense_Mutation p.P1585S 0.26 unknown(0) TCGA-ER-A194-01 9 117063404 117063404 C T COL27A1 Missense_Mutation p.P1585L 0.26 unknown(0) TCGA-ER-A194-01 9 117552677 117552677 G A TNFSF15 3'UTR 0.30 TCGA-ER-A194-01 9 117848948 117848948 G A TNC Silent p.G354G 0.19 TCGA-ER-A194-01 9 119124970 119124970 G A PAPPA Missense_Mutation p.E1483K 0.32 tolerated(0.2) benign(0) TCGA-ER-A194-01 9 120476213 120476213 G A TLR4 Missense_Mutation p.E603K 0.17 tolerated(0.57) benign(0) TCGA-ER-A194-01 9 120476846 120476846 G A TLR4 Missense_Mutation p.A814T 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A194-01 9 121929352 121929352 G A BRINP1 3'UTR 0.27 TCGA-ER-A194-01 9 124062268 124062268 G A GSN Silent p.R43R 0.36 TCGA-ER-A194-01 9 125330650 125330650 T C OR1L8 Missense_Mutation p.Y36C 0.26 deleterious(0) probably_damaging(0.986) TCGA-ER-A194-01 9 125391017 125391017 G A OR1B1 Silent p.F266F 0.25 TCGA-ER-A194-01 9 125391605 125391605 C T OR1B1 Silent p.V70V 0.40 TCGA-ER-A194-01 9 126134476 126134476 T C CRB2 Silent p.G819G 0.26 TCGA-ER-A194-01 9 126143867 126143867 C G DENND1A Silent p.L958L 0.19 TCGA-ER-A194-01 9 127302395 127302395 G A NR6A1 Silent p.N171N 0.31 TCGA-ER-A194-01 9 129453307 129453307 G A LMX1B Silent p.K173K 0.27 TCGA-ER-A194-01 9 130587172 130587172 G A ENG Silent p.L300L 0.26 TCGA-ER-A194-01 9 131862950 131862950 G A CRAT Missense_Mutation p.S275F 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 9 136315052 136315052 C T ADAMTS13 Nonsense_Mutation p.Q1004* 0.40 TCGA-ER-A194-01 9 136899928 136899928 C T BRD3 Missense_Mutation p.A654T 0.29 tolerated(0.96) benign(0.14) TCGA-ER-A194-01 9 137777697 137777697 G A FCN2 Silent p.G171G 0.17 TCGA-ER-A194-01 9 139091705 139091705 G A LHX3 Silent p.A96A 0.38 TCGA-ER-A194-01 9 139650977 139650977 G A LCN8 Missense_Mutation p.P75S 0.27 deleterious(0.05) probably_damaging(0.987) TCGA-ER-A194-01 9 140110907 140110907 C T NDOR1 3'UTR 0.31 TCGA-ER-A194-01 9 140201409 140201409 G A EXD3 Missense_Mutation p.P875L 0.23 tolerated_low_confidence(1) unknown(0) TCGA-ER-A194-01 9 140446713 140446713 C T MRPL41 Silent p.F60F 0.24 TCGA-ER-A194-01 9 140508890 140508890 C T ARRDC1 Missense_Mutation p.P253L 0.26 tolerated(0.07) benign(0.403) TCGA-ER-A194-01 9 15190619 15190619 C T TTC39B Silent p.R346R 0.24 TCGA-ER-A194-01 9 2058350 2058350 G T SMARCA2 Silent p.V469V 0.22 TCGA-ER-A194-01 9 21304743 21304743 G A IFNA5 Silent p.I171I 0.39 TCGA-ER-A194-01 9 33989090 33989090 T A UBAP2 Missense_Mutation p.N108I 0.24 tolerated(0.14) probably_damaging(0.959) TCGA-ER-A194-01 9 34372267 34372267 G A KIAA1161 Silent p.L191L 0.27 TCGA-ER-A194-01 9 34689683 34689683 C T CCL19 3'UTR 0.25 TCGA-ER-A194-01 9 35547173 35547173 G A RUSC2 Missense_Mutation p.D219N 0.17 tolerated(0.42) probably_damaging(0.995) TCGA-ER-A194-01 9 35714779 35714779 G A TLN1 Missense_Mutation p.P950L 0.27 tolerated(0.05) possibly_damaging(0.713) TCGA-ER-A194-01 9 35870329 35870329 C T OR13J1 Missense_Mutation p.E24K 0.21 deleterious(0.03) benign(0.025) TCGA-ER-A194-01 9 37541745 37541745 G A FBXO10 Silent p.P7P 0.25 TCGA-ER-A194-01 9 37769949 37769949 A G TRMT10B Silent p.T195T 0.28 TCGA-ER-A194-01 9 38396955 38396955 G A ALDH1B1 Missense_Mutation p.G404S 0.19 tolerated(1) benign(0.007) TCGA-ER-A194-01 9 3856110 3856110 C T GLIS3 Missense_Mutation p.R791K 0.23 tolerated(0.36) probably_damaging(0.984) TCGA-ER-A194-01 9 39177414 39177414 G A CNTNAP3 Silent p.L276L 0.30 TCGA-ER-A194-01 9 5164230 5164230 C T INSL6 Missense_Mutation p.E109K 0.20 tolerated(0.44) possibly_damaging(0.874) TCGA-ER-A194-01 9 5921171 5921171 T A KIAA2026 Nonsense_Mutation p.K1609* 0.25 TCGA-ER-A194-01 9 6984370 6984370 G A KDM4C Silent p.V440V 0.27 TCGA-ER-A194-01 9 71862934 71862934 G A TJP2 Missense_Mutation p.G923R 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-ER-A194-01 9 72967180 72967180 C T SMC5 Missense_Mutation p.P1080L 0.26 tolerated(0.06) benign(0.097) TCGA-ER-A194-01 9 77257398 77257398 C T RORB Nonsense_Mutation p.Q102* 0.30 TCGA-ER-A194-01 9 77343254 77343254 C T TRPM6 Missense_Mutation p.G1946R 0.26 tolerated(0.08) benign(0.232) TCGA-ER-A194-01 9 78601051 78601051 G A PCSK5 Missense_Mutation p.E101K 0.23 tolerated(0.07) benign(0.238) TCGA-ER-A194-01 9 78953279 78953279 C T PCSK5 Missense_Mutation p.H1601Y 0.27 tolerated(1) benign(0.001) TCGA-ER-A194-01 9 8375972 8375972 T C PTPRD Missense_Mutation p.N1542S 0.33 deleterious(0) probably_damaging(0.979) TCGA-ER-A194-01 9 84530842 84530842 C T SPATA31D5P RNA 0.11 TCGA-ER-A194-01 9 85607846 85607846 C T RASEF Missense_Mutation p.G672E 0.27 tolerated(0.47) benign(0.381) TCGA-ER-A194-01 9 90535541 90535541 C T SPATA31C1 RNA 0.30 TCGA-ER-A194-01 9 94172135 94172135 G A NFIL3 Silent p.V294V 0.26 TCGA-ER-A194-01 9 95480983 95480983 G A BICD2 Silent p.T648T 0.30 TCGA-ER-A194-01 9 95480984 95480984 G A BICD2 Missense_Mutation p.T648I 0.30 deleterious(0) probably_damaging(0.922) TCGA-ER-A194-01 9 96408008 96408008 G A PHF2 Missense_Mutation p.D133N 0.23 deleterious(0.02) unknown(0) TCGA-ER-A194-01 X 104464727 104464727 C T TEX13A Missense_Mutation p.E119K 0.45 deleterious(0.03) possibly_damaging(0.877) TCGA-ER-A194-01 X 105179175 105179175 C T NRK Silent p.F1172F 0.68 TCGA-ER-A194-01 X 106028359 106028359 G A RNF128 Missense_Mutation p.G266E 0.53 deleterious(0.01) probably_damaging(1) TCGA-ER-A194-01 X 107923973 107923973 G A COL4A5 Missense_Mutation p.G1336E 0.56 probably_damaging(0.988) TCGA-ER-A194-01 X 109697734 109697734 C T RGAG1 Silent p.L1297L 0.59 TCGA-ER-A194-01 X 114141178 114141178 G A HTR2C Missense_Mutation p.G193R 0.60 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 X 114357656 114357656 C T LRCH2 Missense_Mutation p.R650Q 0.62 deleterious(0.02) possibly_damaging(0.453) TCGA-ER-A194-01 X 117695433 117695433 G A DOCK11 Missense_Mutation p.E216K 0.50 deleterious(0) possibly_damaging(0.876) TCGA-ER-A194-01 X 122756641 122756641 C T THOC2 Silent p.G1251G 0.23 TCGA-ER-A194-01 X 122756642 122756642 C T THOC2 Missense_Mutation p.G1251E 0.23 tolerated(1) benign(0.287) TCGA-ER-A194-01 X 123539080 123539080 C T TENM1 Missense_Mutation p.G1731D 0.53 deleterious(0.01) benign(0.367) TCGA-ER-A194-01 X 123630908 123630908 C T TENM1 Missense_Mutation p.R1218K 0.44 tolerated(0.34) benign(0.443) TCGA-ER-A194-01 X 125299291 125299291 G A DCAF12L2 Missense_Mutation p.T206I 0.56 deleterious(0.02) probably_damaging(0.936) TCGA-ER-A194-01 X 125685224 125685224 C T DCAF12L1 Silent p.G456G 0.54 TCGA-ER-A194-01 X 129159089 129159089 C T BCORL1 Silent p.T1271T 0.61 TCGA-ER-A194-01 X 130678378 130678378 G A OR13H1 Missense_Mutation p.E111K 0.64 deleterious(0) probably_damaging(0.987) TCGA-ER-A194-01 X 134990687 134990687 G A SAGE1 Missense_Mutation p.R451Q 0.67 tolerated(0.14) benign(0.016) TCGA-ER-A194-01 X 137717682 137717682 G A FGF13 Silent p.I189I 0.59 TCGA-ER-A194-01 X 1401576 1401576 C T CSF2RA 5'UTR 0.37 TCGA-ER-A194-01 X 142795479 142795479 G A SPANXN2 Nonsense_Mutation p.Q67* 0.53 TCGA-ER-A194-01 X 1428361 1428361 G A CSF2RA Missense_Mutation p.E432K 0.25 deleterious(0.01) possibly_damaging(0.895) TCGA-ER-A194-01 X 151303687 151303687 C T MAGEA10 Missense_Mutation p.E136K 0.65 tolerated(1) benign(0.031) TCGA-ER-A194-01 X 151303843 151303843 G A MAGEA10 Missense_Mutation p.P84S 0.54 tolerated(0.62) benign(0.021) TCGA-ER-A194-01 X 151303845 151303845 G A MAGEA10 Missense_Mutation p.P83L 0.56 tolerated(0.39) benign(0.135) TCGA-ER-A194-01 X 153924289 153924289 C T GAB3 Missense_Mutation p.R478Q 0.38 tolerated(0.09) possibly_damaging(0.621) TCGA-ER-A194-01 X 154115738 154115738 C T F8A1 Silent p.T363T 0.19 TCGA-ER-A194-01 X 17750517 17750517 C T NHS Missense_Mutation p.S1609F 0.51 deleterious(0) probably_damaging(0.999) TCGA-ER-A194-01 X 17771519 17771519 C T SCML1 3'UTR 0.61 TCGA-ER-A194-01 X 21550134 21550134 G A CNKSR2 Missense_Mutation p.E418K 0.56 deleterious(0.01) benign(0.277) TCGA-ER-A194-01 X 21995186 21995186 C - SMS Frame_Shift_Del p.I114* 0.29 TCGA-ER-A194-01 X 26212144 26212144 C T MAGEB6 Missense_Mutation p.P61S 0.61 tolerated(0.18) probably_damaging(0.95) TCGA-ER-A194-01 X 31196793 31196793 T A DMD Missense_Mutation p.M3406L 0.27 benign(0.018) TCGA-ER-A194-01 X 3227926 3227926 G A MXRA5 Missense_Mutation p.S2773L 0.36 tolerated(0.05) benign(0.031) TCGA-ER-A194-01 X 3240320 3240320 C T MXRA5 Missense_Mutation p.V1136I 0.62 tolerated(0.08) benign(0.024) TCGA-ER-A194-01 X 34962010 34962010 G A FAM47B Silent p.E354E 0.59 TCGA-ER-A194-01 X 41646435 41646435 C T CASK Missense_Mutation p.E92K 0.66 deleterious(0.01) probably_damaging(0.912) TCGA-ER-A194-01 X 44109483 44109483 C T EFHC2 Missense_Mutation p.R272Q 0.62 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A194-01 X 48049680 48049680 C T SSX5 Missense_Mutation p.E160K 0.57 tolerated(0.22) benign(0.009) TCGA-ER-A194-01 X 57473463 57473463 C T FAAH2 Missense_Mutation p.P407S 0.46 deleterious(0.03) possibly_damaging(0.897) TCGA-ER-A194-01 X 67942004 67942004 G A STARD8 Splice_Site p.X858_splice 0.64 TCGA-ER-A194-01 X 71870278 71870278 C T PHKA1 Missense_Mutation p.R429K 0.50 deleterious(0) possibly_damaging(0.769) TCGA-ER-A194-01 X 72433851 72433851 C T NAP1L2 Missense_Mutation p.E160K 0.64 deleterious(0.04) possibly_damaging(0.856) TCGA-ER-A194-01 X 73046579 73046579 C T XIST RNA 0.63 TCGA-ER-A194-01 X 73062652 73062652 G A XIST RNA 0.62 TCGA-ER-A194-01 X 73960658 73960658 C T KIAA2022 Missense_Mutation p.G1245E 0.65 tolerated(0.85) benign(0.009) TCGA-ER-A194-01 X 73962043 73962043 C T KIAA2022 Silent p.K783K 0.56 TCGA-ER-A194-01 X 75003703 75003703 C T MAGEE2 Missense_Mutation p.S395N 0.45 tolerated(0.39) probably_damaging(0.992) TCGA-ER-A194-01 X 84520135 84520135 A T ZNF711 Missense_Mutation p.I264F 0.56 tolerated(0.13) probably_damaging(0.988) TCGA-ER-A194-01 X 84559418 84559418 G A POF1B Silent p.F499F 0.47 TCGA-ER-A194-01 X 84559419 84559419 A G POF1B Missense_Mutation p.F499S 0.47 deleterious(0) possibly_damaging(0.888) TCGA-ER-A194-01 X 84601024 84601024 G A POF1B Missense_Mutation p.H189Y 0.58 tolerated_low_confidence(0.41) benign(0.006) TCGA-ER-A194-01 X 91873377 91873377 C T PCDH11X Missense_Mutation p.S1161F 0.56 tolerated_low_confidence(0.67) benign(0.157) TCGA-ER-A194-01 X 92965197 92965197 G A FAM133A 3'UTR 0.30 TCGA-ER-A194-01 Y 15410906 15410906 C T UTY Missense_Mutation p.G1170S 0.73 deleterious(0) probably_damaging(1) TCGA-ER-A194-01 Y 2712265 2712265 C T RPS4Y1 Nonsense_Mutation p.R77* 0.62 TCGA-ER-A195-06 10 102054388 102054388 G A PKD2L1 Silent p.L521L 0.33 TCGA-ER-A195-06 10 105953668 105953668 G A WDR96 Silent p.V466V 0.17 TCGA-ER-A195-06 10 118228729 118228729 C G PNLIPRP3 Missense_Mutation p.C320W 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 10 118228749 118228749 C G PNLIPRP3 Missense_Mutation p.A327G 0.31 deleterious(0) probably_damaging(0.993) TCGA-ER-A195-06 10 119044942 119044942 G A PDZD8 Silent p.I434I 0.33 TCGA-ER-A195-06 10 124457593 124457593 C T C10orf120 Missense_Mutation p.D222N 0.35 tolerated(0.69) benign(0.01) TCGA-ER-A195-06 10 135369309 135369309 G A SYCE1 Missense_Mutation p.R232C 0.28 deleterious(0.04) probably_damaging(1) TCGA-ER-A195-06 10 21074831 21074831 C T NEBL Missense_Mutation p.D964N 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 10 22690107 22690107 G A SPAG6 Silent p.K405K 0.21 TCGA-ER-A195-06 10 33542975 33542975 G A NRP1 Missense_Mutation p.S321F 0.21 deleterious(0) probably_damaging(0.981) TCGA-ER-A195-06 10 37508414 37508414 G A ANKRD30A Silent p.R1202R 0.34 TCGA-ER-A195-06 10 44111840 44111840 G A ZNF485 Missense_Mutation p.G117S 0.28 tolerated(0.81) benign(0.002) TCGA-ER-A195-06 10 55581682 55581682 C T PCDH15 Missense_Mutation p.G1937E 0.21 tolerated_low_confidence(1) unknown(0) TCGA-ER-A195-06 10 61443922 61443922 G A SLC16A9 Missense_Mutation p.A43V 0.32 tolerated(0.73) benign(0.005) TCGA-ER-A195-06 10 61831464 61831464 C T ANK3 Missense_Mutation p.E3059K 0.28 benign(0.023) TCGA-ER-A195-06 10 71690276 71690276 G A COL13A1 Missense_Mutation p.E540K 0.24 tolerated(0.16) benign(0.243) TCGA-ER-A195-06 10 72285693 72285693 G A PALD1 5'UTR 0.13 TCGA-ER-A195-06 10 73521673 73521673 C T C10orf54 Missense_Mutation p.D65N 0.22 deleterious(0.05) benign(0.096) TCGA-ER-A195-06 10 84718705 84718705 G A NRG3 Silent p.K386K 0.24 TCGA-ER-A195-06 10 88988226 88988226 G A NUTM2A Missense_Mutation p.G197R 0.18 deleterious(0) probably_damaging(0.983) TCGA-ER-A195-06 11 121429346 121429346 C T SORL1 Missense_Mutation p.R904W 0.30 deleterious(0) probably_damaging(0.988) TCGA-ER-A195-06 11 123509025 123509025 C T SCN3B Silent p.E151E 0.33 TCGA-ER-A195-06 11 1270670 1270670 T C MUC5B Missense_Mutation p.L4187S 0.23 probably_damaging(0.997) TCGA-ER-A195-06 11 14808177 14808177 C T PDE3B Silent p.Y408Y 0.31 TCGA-ER-A195-06 11 18159526 18159526 C T MRGPRX3 Silent p.F259F 0.25 TCGA-ER-A195-06 11 18428703 18428703 C T LDHA Missense_Mutation p.P321S 0.13 deleterious(0.01) probably_damaging(0.96) TCGA-ER-A195-06 11 27679989 27679989 C T BDNF Silent p.G123G 0.31 TCGA-ER-A195-06 11 33566325 33566325 C T KIAA1549L Missense_Mutation p.S632L 0.36 tolerated_low_confidence(0.09) benign(0.004) TCGA-ER-A195-06 11 33881008 33881008 G A LMO2 Missense_Mutation p.A193V 0.32 tolerated(0.24) benign(0.076) TCGA-ER-A195-06 11 55419023 55419023 C T OR4S2 Missense_Mutation p.S215F 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 11 55563919 55563919 T G OR5D14 Missense_Mutation p.N296K 0.38 deleterious(0.01) possibly_damaging(0.555) TCGA-ER-A195-06 11 55681877 55681877 A T OR5W2 Missense_Mutation p.F61Y 0.25 tolerated(0.24) benign(0.064) TCGA-ER-A195-06 11 55761808 55761808 G A OR5F1 Silent p.F98F 0.23 TCGA-ER-A195-06 11 55761975 55761975 G A OR5F1 Missense_Mutation p.L43F 0.24 deleterious(0.01) benign(0.004) TCGA-ER-A195-06 11 55798785 55798785 G A OR5AS1 Silent p.V297V 0.21 TCGA-ER-A195-06 11 56143652 56143652 C T OR8U1 Missense_Mutation p.L185F 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 11 57798591 57798591 G A OR6Q1 Missense_Mutation p.R56Q 0.24 tolerated(1) benign(0.004) TCGA-ER-A195-06 11 58379782 58379782 C T ZFP91 Missense_Mutation p.P297S 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A195-06 11 64951035 64951035 A T CAPN1 Missense_Mutation p.N143I 0.23 deleterious(0.01) benign(0.036) TCGA-ER-A195-06 11 65631970 65631970 C T MUS81 Silent p.F354F 0.27 TCGA-ER-A195-06 11 65793311 65793311 G A CATSPER1 Silent p.L180L 0.15 TCGA-ER-A195-06 11 89182645 89182645 G A NOX4 Silent p.F104F 0.22 TCGA-ER-A195-06 11 89768518 89768518 C T TRIM49C Missense_Mutation p.P47S 0.28 tolerated(0.42) benign(0.021) TCGA-ER-A195-06 11 93819248 93819248 G A HEPHL1 Missense_Mutation p.G658E 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 11 96124980 96124980 C T JRKL Silent p.L389L 0.32 TCGA-ER-A195-06 12 101333113 101333113 C T ANO4 Missense_Mutation p.L26F 0.31 tolerated_low_confidence(0.48) benign(0.004) TCGA-ER-A195-06 12 117768765 117768765 C T NOS1 Missense_Mutation p.S37N 0.20 tolerated_low_confidence(0.16) benign(0.006) TCGA-ER-A195-06 12 117962701 117962701 G A KSR2 Silent p.F725F 0.23 TCGA-ER-A195-06 12 120585041 120585041 G A GCN1L1 Missense_Mutation p.P1588S 0.24 probably_damaging(0.999) TCGA-ER-A195-06 12 121712086 121712086 G A CAMKK2 Missense_Mutation p.P82S 0.29 tolerated_low_confidence(0.14) benign(0.005) TCGA-ER-A195-06 12 123645789 123645789 G A MPHOSPH9 Missense_Mutation p.P940L 0.18 deleterious(0.04) possibly_damaging(0.756) TCGA-ER-A195-06 12 123892065 123892065 C T SETD8 Missense_Mutation p.R292C 0.30 deleterious(0) probably_damaging(0.996) TCGA-ER-A195-06 12 126135483 126135483 G A TMEM132B Missense_Mutation p.G628E 0.25 deleterious(0) probably_damaging(0.993) TCGA-ER-A195-06 12 132237735 132237735 C T SFSWAP Silent p.P383P 0.15 TCGA-ER-A195-06 12 132237736 132237736 C T SFSWAP Missense_Mutation p.P384S 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-ER-A195-06 12 18854502 18854502 C T PLCZ1 Missense_Mutation p.G317E 0.34 tolerated(0.49) benign(0.053) TCGA-ER-A195-06 12 51888848 51888848 C T SLC4A8 Silent p.L963L 0.19 TCGA-ER-A195-06 12 53169229 53169229 C T KRT76 Missense_Mutation p.G253E 0.27 tolerated(0.08) possibly_damaging(0.837) TCGA-ER-A195-06 12 53238453 53238453 C T KRT78 Missense_Mutation p.D271N 0.20 deleterious(0) probably_damaging(0.981) TCGA-ER-A195-06 12 53295761 53295761 G A KRT8 Silent p.F168F 0.28 TCGA-ER-A195-06 12 53499791 53499791 G A SOAT2 Missense_Mutation p.E146K 0.36 tolerated(0.09) benign(0.345) TCGA-ER-A195-06 12 53709124 53709124 G A AAAS Silent p.L132L 0.22 TCGA-ER-A195-06 12 55715321 55715321 G A OR6C1 Silent p.%3D 0.20 TCGA-ER-A195-06 12 57849480 57849480 G A INHBE Missense_Mutation p.G54E 0.24 tolerated(0.17) probably_damaging(1) TCGA-ER-A195-06 12 7585969 7585969 C T CD163L1 Splice_Site p.X149_splice 0.30 TCGA-ER-A195-06 12 80658957 80658957 C T OTOGL Missense_Mutation p.P722S 0.29 tolerated(0.84) benign(0.002) TCGA-ER-A195-06 12 86373303 86373303 G A MGAT4C Missense_Mutation p.R401W 0.20 deleterious(0) probably_damaging(0.972) TCGA-ER-A195-06 12 99640355 99640355 C T ANKS1B Missense_Mutation p.E682K 0.25 tolerated(0.18) benign(0.174) TCGA-ER-A195-06 13 20398555 20398555 G A ZMYM5 3'UTR 0.50 TCGA-ER-A195-06 13 70314608 70314608 C T KLHL1 Missense_Mutation p.D574N 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-ER-A195-06 14 101526114 101526114 C T MIR154 RNA 0.25 TCGA-ER-A195-06 14 20215844 20215844 C T OR4Q3 Silent p.F86F 0.27 TCGA-ER-A195-06 14 20295871 20295871 G A OR4N2 Silent p.A88A 0.31 TCGA-ER-A195-06 14 20404233 20404233 G A OR4K1 Missense_Mutation p.M136I 0.29 tolerated(0.06) benign(0.005) TCGA-ER-A195-06 14 22309704 22309704 C T TRAV12-1 Missense_Mutation p.P29S 0.34 tolerated(0.07) possibly_damaging(0.612) TCGA-ER-A195-06 14 24839398 24839398 C T NFATC4 Missense_Mutation p.P328L 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 14 33293521 33293521 G A AKAP6 Missense_Mutation p.E2168K 0.37 tolerated_low_confidence(0.46) benign(0.002) TCGA-ER-A195-06 14 35487895 35487895 C T SRP54 Intron 0.30 TCGA-ER-A195-06 14 55655683 55655683 G A DLGAP5 Missense_Mutation p.P72L 0.28 tolerated(0.2) benign(0.012) TCGA-ER-A195-06 14 62016412 62016412 G A PRKCH Missense_Mutation p.E639K 0.36 tolerated(0.57) possibly_damaging(0.607) TCGA-ER-A195-06 14 75570664 75570664 G A NEK9 Nonsense_Mutation p.Q538* 0.26 TCGA-ER-A195-06 14 93954022 93954022 G A UNC79 Silent p.R34R 0.19 TCGA-ER-A195-06 14 96706842 96706842 C T BDKRB2 Silent p.I59I 0.22 TCGA-ER-A195-06 15 24923674 24923674 C T NPAP1 Missense_Mutation p.S887F 0.23 deleterious(0.03) possibly_damaging(0.85) TCGA-ER-A195-06 15 27185163 27185163 G A GABRA5 Silent p.V272V 0.42 TCGA-ER-A195-06 15 41146714 41146714 G A SPINT1 Missense_Mutation p.E370K 0.39 deleterious(0.01) benign(0.272) TCGA-ER-A195-06 15 62948154 62948154 G A TLN2 Missense_Mutation p.D177N 0.32 tolerated(0.08) benign(0.271) TCGA-ER-A195-06 15 63097861 63097861 G A TLN2 Silent p.T2180T 0.25 TCGA-ER-A195-06 15 71447252 71447252 C T THSD4 Missense_Mutation p.P27L 0.16 tolerated_low_confidence(0.22) benign(0.07) TCGA-ER-A195-06 15 74742300 74742300 G A UBL7 Missense_Mutation p.S214F 0.30 deleterious(0) benign(0.118) TCGA-ER-A195-06 15 75798234 75798234 G A PTPN9 Silent p.F250F 0.38 TCGA-ER-A195-06 15 90340813 90340813 G A ANPEP Missense_Mutation p.P717L 0.29 deleterious(0.05) benign(0.017) TCGA-ER-A195-06 16 10867224 10867224 C T TVP23A Missense_Mutation p.M133I 0.30 tolerated(0.55) benign(0.001) TCGA-ER-A195-06 16 1250544 1250544 C T CACNA1H Silent p.I364I 0.19 TCGA-ER-A195-06 16 1270291 1270291 C T CACNA1H Missense_Mutation p.P2120L 0.20 tolerated(0.14) benign(0.007) TCGA-ER-A195-06 16 22335828 22335835 GCGCCGAG - POLR3E Frame_Shift_Del p.C378* 0.20 TCGA-ER-A195-06 16 31374270 31374270 C T ITGAX Silent p.F458F 0.25 TCGA-ER-A195-06 16 3293408 3293408 C T MEFV Missense_Mutation p.M693I 0.15 deleterious(0.02) possibly_damaging(0.582) TCGA-ER-A195-06 16 5112557 5112557 C T C16orf89 Missense_Mutation p.R76Q 0.22 tolerated(1) benign(0) TCGA-ER-A195-06 16 56599019 56599019 G A MT4 5'UTR 0.26 TCGA-ER-A195-06 16 68057137 68057137 G A DDX28 5'UTR 0.35 TCGA-ER-A195-06 16 70917898 70917898 C T HYDIN Missense_Mutation p.D3302N 0.14 probably_damaging(0.913) TCGA-ER-A195-06 16 74976658 74976658 T A WDR59 Missense_Mutation p.D171V 0.19 deleterious(0.01) possibly_damaging(0.881) TCGA-ER-A195-06 16 830203 830203 G A MSLNL Silent p.A266A 0.22 TCGA-ER-A195-06 17 10395819 10395819 C T MYH1 Missense_Mutation p.E1912K 0.50 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 17 10428305 10428305 C T MYH2 Silent p.R1580R 0.36 TCGA-ER-A195-06 17 12823142 12823142 G A ARHGAP44 Missense_Mutation p.R153Q 0.36 deleterious(0) probably_damaging(0.91) TCGA-ER-A195-06 17 29284864 29284864 G A ADAP2 Missense_Mutation p.E375K 0.27 deleterious_low_confidence(0.01) benign(0.002) TCGA-ER-A195-06 17 3119002 3119002 C T OR1A1 Missense_Mutation p.L30F 0.44 deleterious(0.03) benign(0.048) TCGA-ER-A195-06 17 36958426 36958426 G A CWC25 Silent p.S399S 0.27 TCGA-ER-A195-06 17 39551128 39551128 G A KRT31 Missense_Mutation p.R357W 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-ER-A195-06 17 39551129 39551129 G A KRT31 Silent p.Y356Y 0.25 TCGA-ER-A195-06 17 39919376 39919376 C T JUP Silent p.T452T 0.26 TCGA-ER-A195-06 17 40932965 40932965 C T WNK4 Silent p.P83P 0.22 TCGA-ER-A195-06 17 41926191 41926191 G A CD300LG Silent p.G103G 0.36 TCGA-ER-A195-06 17 42463073 42463073 G - ITGA2B Frame_Shift_Del p.W141Gfs*7 0.08 TCGA-ER-A195-06 17 43194006 43194006 G A PLCD3 Missense_Mutation p.S469F 0.36 deleterious(0) probably_damaging(0.978) TCGA-ER-A195-06 17 48599379 48599379 C T MYCBPAP Silent p.G441G 0.14 TCGA-ER-A195-06 17 58952089 58952089 C T BCAS3 Silent p.F217F 0.25 TCGA-ER-A195-06 17 72340379 72340379 C T KIF19 Silent p.I158I 0.30 TCGA-ER-A195-06 17 72480308 72480308 G A CD300A 3'UTR 0.37 TCGA-ER-A195-06 17 7318893 7318893 C T NLGN2 Silent p.L367L 0.30 TCGA-ER-A195-06 18 28712616 28712616 C T DSC1 Missense_Mutation p.R718K 0.35 tolerated(0.58) benign(0.007) TCGA-ER-A195-06 18 28968370 28968370 G A DSG4 Missense_Mutation p.R86Q 0.32 tolerated(0.12) probably_damaging(0.975) TCGA-ER-A195-06 18 34854466 34854466 C T CELF4 Intron 0.27 TCGA-ER-A195-06 18 47511133 47511133 C T MYO5B Missense_Mutation p.D301N 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 18 51025841 51025841 G A DCC Missense_Mutation p.E1358K 0.18 deleterious(0.03) benign(0.348) TCGA-ER-A195-06 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.23 deleterious(0.01) possibly_damaging(0.663) TCGA-ER-A195-06 18 77894726 77894726 C T ADNP2 Missense_Mutation p.P477L 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 19 10800209 10800209 C T ILF3 3'UTR 0.23 TCGA-ER-A195-06 19 11537855 11537855 C T CCDC151 Silent p.L150L 0.36 TCGA-ER-A195-06 19 22157069 22157069 G A ZNF208 Missense_Mutation p.S256F 0.30 deleterious(0) benign(0.028) TCGA-ER-A195-06 19 42930475 42930475 C T LIPE Missense_Mutation p.G276E 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.826) TCGA-ER-A195-06 19 44222942 44222942 G A IRGC Missense_Mutation p.E78K 0.32 tolerated(0.22) benign(0.001) TCGA-ER-A195-06 19 49244255 49244255 G A IZUMO1 Silent p.F321F 0.22 TCGA-ER-A195-06 19 53454132 53454132 G A ZNF816 Missense_Mutation p.S299F 0.30 tolerated(0.14) possibly_damaging(0.862) TCGA-ER-A195-06 19 53645692 53645692 G A ZNF347 Missense_Mutation p.S131F 0.25 tolerated(0.66) benign(0) TCGA-ER-A195-06 19 55221553 55221553 G A AC098784.2 3'Flank 0.38 TCGA-ER-A195-06 19 58579313 58579313 C T ZNF135 Silent p.I511I 0.19 TCGA-ER-A195-06 19 6896500 6896500 C T EMR1 Silent p.F62F 0.43 TCGA-ER-A195-06 19 9060012 9060012 G A MUC16 Missense_Mutation p.S9145F 0.27 unknown(0) TCGA-ER-A195-06 1 100154801 100154801 C T PALMD Missense_Mutation p.P329S 0.31 tolerated(0.08) probably_damaging(0.915) TCGA-ER-A195-06 1 112329604 112329604 G A KCND3 Missense_Mutation p.H411Y 0.24 deleterious(0.03) benign(0.152) TCGA-ER-A195-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.28 deleterious(0.01) benign(0.045) TCGA-ER-A195-06 1 11595677 11595677 G A PTCHD2 Silent p.E1264E 0.20 TCGA-ER-A195-06 1 119925537 119925537 G A HAO2 Splice_Site p.X44_splice 0.37 TCGA-ER-A195-06 1 152192185 152192185 G A HRNR Silent p.G640G 0.23 TCGA-ER-A195-06 1 153912080 153912080 G A DENND4B Missense_Mutation p.L602F 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 1 156316556 156316556 G A TSACC Intron 0.25 TCGA-ER-A195-06 1 156812890 156812890 G A INSRR Missense_Mutation p.A1011V 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 1 157494225 157494225 G A FCRL5 Missense_Mutation p.H695Y 0.26 deleterious(0.03) possibly_damaging(0.6) TCGA-ER-A195-06 1 157659629 157659629 G A FCRL3 Missense_Mutation p.A590V 0.14 tolerated(0.41) benign(0.018) TCGA-ER-A195-06 1 161022551 161022551 C T ARHGAP30 Missense_Mutation p.G234E 0.24 deleterious(0.03) benign(0.322) TCGA-ER-A195-06 1 169698456 169698456 G A SELE Missense_Mutation p.P321S 0.32 tolerated(0.32) benign(0.023) TCGA-ER-A195-06 1 186072783 186072783 C T HMCN1 Nonsense_Mutation p.R3585* 0.37 TCGA-ER-A195-06 1 196197368 196197368 C T KCNT2 Missense_Mutation p.E1132K 0.34 deleterious_low_confidence(0) benign(0.045) TCGA-ER-A195-06 1 202910757 202910757 G A ADIPOR1 Missense_Mutation p.L358F 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-ER-A195-06 1 210857348 210857348 C T KCNH1 Missense_Mutation p.E749K 0.24 tolerated(0.06) benign(0.14) TCGA-ER-A195-06 1 220953378 220953378 C T MARC2 Silent p.L257L 0.33 TCGA-ER-A195-06 1 232943495 232943495 C T MAP10 Missense_Mutation p.S909L 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 1 233807084 233807084 G A KCNK1 Silent p.L273L 0.43 TCGA-ER-A195-06 1 234367384 234367384 C T SLC35F3 Missense_Mutation p.L169F 0.19 deleterious(0.03) benign(0.082) TCGA-ER-A195-06 1 236187432 236187432 G A NID1 Missense_Mutation p.P689L 0.39 tolerated(0.07) benign(0.009) TCGA-ER-A195-06 1 247978766 247978766 G A OR14A16 Missense_Mutation p.S89F 0.32 tolerated(0.22) benign(0.127) TCGA-ER-A195-06 1 248112820 248112820 C T OR2L8 Missense_Mutation p.L221F 0.16 tolerated(0.07) benign(0.305) TCGA-ER-A195-06 1 35900534 35900534 G A KIAA0319L Silent p.T1037T 0.21 TCGA-ER-A195-06 1 42620375 42620375 G A GUCA2B Missense_Mutation p.E39K 0.36 deleterious(0.03) benign(0.312) TCGA-ER-A195-06 1 43772651 43772651 C T TIE1 Missense_Mutation p.R209W 0.22 deleterious(0) probably_damaging(0.997) TCGA-ER-A195-06 1 46744976 46744976 G A LRRC41 Intron 0.35 TCGA-ER-A195-06 1 46976687 46976687 G A DMBX1 Silent p.E138E 0.15 TCGA-ER-A195-06 1 47564916 47564916 G A CYP4Z1 Missense_Mutation p.E343K 0.30 deleterious(0) possibly_damaging(0.874) TCGA-ER-A195-06 1 57399146 57399146 C T C8B Missense_Mutation p.E472K 0.22 deleterious(0) probably_damaging(0.973) TCGA-ER-A195-06 1 74492592 74492592 C T LRRIQ3 Missense_Mutation p.E594K 0.17 tolerated(0.05) benign(0.002) TCGA-ER-A195-06 1 7863183 7863183 C T PER3 Missense_Mutation p.R316C 0.29 deleterious(0.02) probably_damaging(0.965) TCGA-ER-A195-06 1 86959252 86959252 G A CLCA1 Missense_Mutation p.M550I 0.29 tolerated(0.48) benign(0.238) TCGA-ER-A195-06 1 94505682 94505682 C T ABCA4 Missense_Mutation p.G1175E 0.25 tolerated(0.65) benign(0.002) TCGA-ER-A195-06 1 94655646 94655646 A T ARHGAP29 Intron 0.21 TCGA-ER-A195-06 20 33173253 33173253 G C PIGU Missense_Mutation p.A305G 0.25 deleterious(0.02) possibly_damaging(0.755) TCGA-ER-A195-06 20 33337510 33337510 G A NCOA6 Missense_Mutation p.P830S 0.19 probably_damaging(0.998) TCGA-ER-A195-06 20 33337511 33337511 G C NCOA6 Silent p.V829V 0.19 TCGA-ER-A195-06 20 33593574 33593574 G A TRPC4AP Silent p.S620S 0.25 TCGA-ER-A195-06 20 37546850 37546850 C T PPP1R16B Silent p.I415I 0.26 TCGA-ER-A195-06 20 45015985 45015985 T C ELMO2 Missense_Mutation p.I173V 0.32 tolerated(0.37) benign(0.058) TCGA-ER-A195-06 20 60794874 60794874 G C HRH3 Silent p.G51G 0.31 TCGA-ER-A195-06 20 61957051 61957051 G A COL20A1 Missense_Mutation p.R1127K 0.30 tolerated(0.48) benign(0.009) TCGA-ER-A195-06 21 34901165 34901165 G A GART Missense_Mutation p.P268S 0.16 tolerated(0.12) benign(0.017) TCGA-ER-A195-06 21 38309303 38309303 G A HLCS Missense_Mutation p.P148S 0.24 tolerated(0.41) benign(0.011) TCGA-ER-A195-06 21 46066500 46066500 C T KRTAP10-11 Missense_Mutation p.S42F 0.29 deleterious(0) unknown(0) TCGA-ER-A195-06 21 46876034 46876034 C T COL18A1 Missense_Mutation p.S197F 0.21 unknown(0) TCGA-ER-A195-06 21 47531410 47531410 C T COL6A2 Missense_Mutation p.S7F 0.32 tolerated_low_confidence(0.57) benign(0.032) TCGA-ER-A195-06 22 21363747 21363747 G A AC002472.1 5'Flank 0.33 TCGA-ER-A195-06 22 26423441 26423441 G A MYO18B Missense_Mutation p.D2501N 0.50 deleterious(0) probably_damaging(0.968) TCGA-ER-A195-06 22 32072955 32072955 G A PRR14L 3'Flank 0.24 TCGA-ER-A195-06 22 38884057 38884057 T C DDX17 Missense_Mutation p.H504R 0.28 deleterious(0) probably_damaging(0.996) TCGA-ER-A195-06 22 44681488 44681488 C T KIAA1644 Missense_Mutation p.R140Q 0.28 deleterious(0.01) benign(0.107) TCGA-ER-A195-06 2 125530530 125530530 G A CNTNAP5 Silent p.R895R 0.25 TCGA-ER-A195-06 2 128327450 128327450 A G MYO7B Missense_Mutation p.E186G 0.32 deleterious(0) probably_damaging(0.998) TCGA-ER-A195-06 2 141946086 141946086 C T LRP1B Missense_Mutation p.R306Q 0.42 possibly_damaging(0.553) TCGA-ER-A195-06 2 155099341 155099341 C T GALNT13 Silent p.V203V 0.27 TCGA-ER-A195-06 2 163059452 163059452 C T FAP Missense_Mutation p.E385K 0.32 tolerated(0.47) possibly_damaging(0.472) TCGA-ER-A195-06 2 163136531 163136531 A G IFIH1 Missense_Mutation p.F539S 0.33 deleterious(0.04) benign(0.104) TCGA-ER-A195-06 2 165950892 165950892 G A SCN3A Missense_Mutation p.R1510C 0.25 deleterious(0) probably_damaging(0.977) TCGA-ER-A195-06 2 166221713 166221713 G A SCN2A Missense_Mutation p.G1154R 0.29 tolerated(0.54) probably_damaging(0.995) TCGA-ER-A195-06 2 168110563 168110563 G A XIRP2 Missense_Mutation p.G3526E 0.14 benign(0.281) TCGA-ER-A195-06 2 173351768 173351768 G A ITGA6 Silent p.E624E 0.44 TCGA-ER-A195-06 2 179579825 179579825 G A TTN Silent p.F8696F 0.23 TCGA-ER-A195-06 2 192818523 192818523 C T TMEFF2 Missense_Mutation p.D304N 0.26 deleterious(0) possibly_damaging(0.537) TCGA-ER-A195-06 2 202626056 202626056 G A ALS2 Missense_Mutation p.P221S 0.23 tolerated(0.08) probably_damaging(0.955) TCGA-ER-A195-06 2 205986532 205986532 G A PARD3B Missense_Mutation p.D342N 0.35 tolerated(0.2) benign(0.148) TCGA-ER-A195-06 2 207310033 207310033 C T ADAM23 Missense_Mutation p.P73S 0.33 tolerated_low_confidence(0.72) benign(0) TCGA-ER-A195-06 2 215809796 215809796 C T ABCA12 Silent p.S2424S 0.24 TCGA-ER-A195-06 2 216965155 216965155 C T TMEM169 Silent p.L262L 0.23 TCGA-ER-A195-06 2 222290722 222290722 G A EPHA4 3'UTR 0.22 TCGA-ER-A195-06 2 26852339 26852339 C T CIB4 Missense_Mutation p.G42E 0.25 tolerated(1) benign(0.001) TCGA-ER-A195-06 2 40656052 40656052 A T SLC8A1 Missense_Mutation p.Y457N 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 2 40656053 40656053 A T SLC8A1 Missense_Mutation p.D456E 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 2 71871148 71871148 G A DYSF Silent p.R1527R 0.27 TCGA-ER-A195-06 2 89246995 89246995 G A IGKV1-5 Nonsense_Mutation p.Q59* 0.27 TCGA-ER-A195-06 2 98351794 98351794 G T ZAP70 Missense_Mutation p.Q388H 0.31 tolerated(0.06) benign(0.001) TCGA-ER-A195-06 3 141724290 141724290 G A TFDP2 Missense_Mutation p.P60L 0.29 tolerated(0.07) possibly_damaging(0.794) TCGA-ER-A195-06 3 164772993 164772993 C T SI Missense_Mutation p.G501R 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 3 164907791 164907791 C T SLITRK3 Silent p.R276R 0.27 TCGA-ER-A195-06 3 172351837 172351837 A G NCEH1 Silent p.L259L 0.28 TCGA-ER-A195-06 3 183818418 183818418 G A HTR3E Silent p.A86A 0.38 TCGA-ER-A195-06 3 189689688 189689688 C T LEPREL1 Missense_Mutation p.R603Q 0.16 deleterious(0.05) probably_damaging(0.969) TCGA-ER-A195-06 3 195609178 195609179 CC A TNK2 Frame_Shift_Del p.G274Dfs*19 0.08 TCGA-ER-A195-06 3 195937576 195937576 G A ZDHHC19 Missense_Mutation p.A60V 0.20 tolerated(0.4) benign(0.005) TCGA-ER-A195-06 3 27759079 27759079 G A EOMES Missense_Mutation p.P515S 0.25 tolerated(0.07) benign(0.014) TCGA-ER-A195-06 3 369855 369855 C T CHL1 Missense_Mutation p.S68L 0.43 tolerated(0.13) benign(0.002) TCGA-ER-A195-06 3 38012933 38012933 C T CTDSPL Silent p.F154F 0.21 TCGA-ER-A195-06 3 39226150 39226150 G A XIRP1 Missense_Mutation p.P1596L 0.34 tolerated(0.06) benign(0.009) TCGA-ER-A195-06 3 49698188 49698188 G A BSN Silent p.K2970K 0.31 TCGA-ER-A195-06 3 52255379 52255379 G A TLR9 Nonsense_Mutation p.Q1139* 0.26 TCGA-ER-A195-06 3 52416372 52416372 G A DNAH1 Silent p.K2614K 0.32 TCGA-ER-A195-06 3 71096118 71096118 G A FOXP1 Silent p.A215A 0.33 TCGA-ER-A195-06 3 78663874 78663874 G A ROBO1 Silent p.A1453A 0.27 TCGA-ER-A195-06 3 9781055 9781055 C T BRPF1 Silent p.P324P 0.49 TCGA-ER-A195-06 4 100470146 100470146 G A TRMT10A 3'UTR 0.36 TCGA-ER-A195-06 4 104640509 104640509 C T TACR3 Nonsense_Mutation p.W108* 0.19 TCGA-ER-A195-06 4 109088923 109088923 T C LEF1 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.981) TCGA-ER-A195-06 4 110223112 110223112 G A COL25A1 Missense_Mutation p.P22S 0.24 deleterious(0.02) unknown(0) TCGA-ER-A195-06 4 151242429 151242429 T C LRBA Missense_Mutation p.N2526S 0.20 deleterious(0) probably_damaging(0.986) TCGA-ER-A195-06 4 15646284 15646284 C T FBXL5 Silent p.L44L 0.10 TCGA-ER-A195-06 4 162306889 162306889 C T FSTL5 3'UTR 0.27 TCGA-ER-A195-06 4 164450167 164450167 C T MARCH1 Silent p.L201L 0.28 TCGA-ER-A195-06 4 169604158 169604158 G A PALLD Silent p.K388K 0.21 TCGA-ER-A195-06 4 183664404 183664404 G A TENM3 Missense_Mutation p.R1154Q 0.25 deleterious(0.03) benign(0.045) TCGA-ER-A195-06 4 187629536 187629536 G A FAT1 Silent p.V482V 0.25 TCGA-ER-A195-06 4 189012605 189012605 G A TRIML2 Silent p.I362I 0.28 TCGA-ER-A195-06 4 39114659 39114659 C T KLHL5 Missense_Mutation p.R616C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A195-06 4 42127619 42127619 G A BEND4 Missense_Mutation p.P376L 0.29 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-ER-A195-06 4 44176894 44176894 C T KCTD8 Silent p.Q445Q 0.21 TCGA-ER-A195-06 4 70462093 70462093 C T UGT2A1 Missense_Mutation p.E291K 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-ER-A195-06 4 7719880 7719880 G A SORCS2 Silent p.E798E 0.15 TCGA-ER-A195-06 4 79845036 79845036 G C PAQR3 Silent p.S256S 0.21 TCGA-ER-A195-06 5 109178139 109178139 T C MAN2A1 Missense_Mutation p.Y893H 0.29 deleterious(0.03) probably_damaging(0.984) TCGA-ER-A195-06 5 140718670 140718670 C T PCDHGA2 Silent p.F44F 0.37 TCGA-ER-A195-06 5 141335152 141335152 G A PCDH12 Silent p.A755A 0.32 TCGA-ER-A195-06 5 141335153 141335153 G A PCDH12 Missense_Mutation p.A755V 0.30 deleterious(0) probably_damaging(0.989) TCGA-ER-A195-06 5 156589736 156589736 C T FAM71B Missense_Mutation p.E514K 0.35 tolerated(1) benign(0) TCGA-ER-A195-06 5 1593372 1593372 G A CTD-2012J19.3 5'Flank 0.12 TCGA-ER-A195-06 5 23527766 23527766 G A PRDM9 Missense_Mutation p.E857K 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-ER-A195-06 5 37294509 37294509 G A NUP155 Silent p.F1284F 0.29 TCGA-ER-A195-06 5 38438454 38438454 C T EGFLAM Silent p.P787P 0.31 TCGA-ER-A195-06 5 39202037 39202037 C T FYB Silent p.P352P 0.28 TCGA-ER-A195-06 5 68849485 68849485 G A OCLN Missense_Mutation p.R519K 0.24 tolerated(0.34) benign(0.002) TCGA-ER-A195-06 5 95734621 95734621 C T PCSK1 Missense_Mutation p.R517Q 0.12 deleterious(0.03) possibly_damaging(0.589) TCGA-ER-A195-06 6 116752203 116752203 G A DSE Missense_Mutation p.G253S 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 6 138655193 138655193 T A KIAA1244 Missense_Mutation p.V1737D 0.36 deleterious(0) possibly_damaging(0.623) TCGA-ER-A195-06 6 17507930 17507930 A G CAP2 Missense_Mutation p.N168S 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A195-06 6 29054925 29054925 G A OR2B3 Missense_Mutation p.S34L 0.25 tolerated(0.7) benign(0.049) TCGA-ER-A195-06 6 2953382 2953382 G A SERPINB6 Missense_Mutation p.P157S 0.26 tolerated(1) benign(0.004) TCGA-ER-A195-06 6 30630409 30630409 A G DHX16 Silent p.S513S 0.43 TCGA-ER-A195-06 6 31382870 31382870 C T MICA 3'UTR 0.19 TCGA-ER-A195-06 6 32798514 32798514 C T TAP2 Missense_Mutation p.D448N 0.17 deleterious(0.03) possibly_damaging(0.696) TCGA-ER-A195-06 6 32798515 32798515 C T TAP2 Missense_Mutation p.M447I 0.17 deleterious(0.03) benign(0) TCGA-ER-A195-06 6 33690841 33690841 C T IP6K3 Missense_Mutation p.E297K 0.20 deleterious(0.01) possibly_damaging(0.908) TCGA-ER-A195-06 6 33690842 33690842 C T IP6K3 Silent p.R296R 0.20 TCGA-ER-A195-06 6 34962099 34962099 G A ANKS1A Silent p.R441R 0.29 TCGA-ER-A195-06 6 42819858 42819858 C T GLTSCR1L Missense_Mutation p.S623F 0.23 deleterious(0) benign(0.391) TCGA-ER-A195-06 6 52697667 52697667 G A GSTA5 Missense_Mutation p.P179L 0.19 deleterious(0) probably_damaging(0.979) TCGA-ER-A195-06 6 70092803 70092803 G A BAI3 Silent p.R1452R 0.27 TCGA-ER-A195-06 7 100086079 100086079 C T NYAP1 Silent p.T245T 0.20 TCGA-ER-A195-06 7 100685895 100685895 C T MUC17 Missense_Mutation p.S3733L 0.34 benign(0.01) TCGA-ER-A195-06 7 107707021 107707021 G A LAMB4 Missense_Mutation p.S824L 0.38 deleterious(0) probably_damaging(0.996) TCGA-ER-A195-06 7 124503687 124503687 A G POT1 Missense_Mutation p.V88A 0.29 tolerated(0.66) benign(0.005) TCGA-ER-A195-06 7 139824437 139824437 G A KDM7A Silent p.T345T 0.39 TCGA-ER-A195-06 7 141776030 141776030 T C MGAM Intron 0.37 TCGA-ER-A195-06 7 142649676 142649676 G A KEL Missense_Mutation p.P375S 0.27 tolerated(0.22) probably_damaging(0.999) TCGA-ER-A195-06 7 149128998 149128998 G A ZNF777 Nonsense_Mutation p.Q789* 0.29 TCGA-ER-A195-06 7 157926476 157926476 C T PTPRN2 Silent p.E483E 0.42 TCGA-ER-A195-06 7 50455127 50455127 A T IKZF1 Intron 0.44 TCGA-ER-A195-06 7 50455128 50455128 C T IKZF1 Intron 0.44 TCGA-ER-A195-06 7 51111163 51111163 G A COBL Silent p.D441D 0.29 TCGA-ER-A195-06 7 55468953 55468953 C T LANCL2 Silent p.H255H 0.34 TCGA-ER-A195-06 7 57187738 57187738 C T ZNF479 Missense_Mutation p.E462K 0.17 deleterious(0.03) benign(0.232) TCGA-ER-A195-06 7 71571140 71571140 C T CALN1 Missense_Mutation p.M128I 0.47 deleterious(0.02) benign(0.022) TCGA-ER-A195-06 7 73787282 73787282 C T CLIP2 Silent p.H467H 0.22 TCGA-ER-A195-06 7 73932550 73932550 G A GTF2IRD1 Missense_Mutation p.G200E 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-ER-A195-06 7 73933934 73933934 C T GTF2IRD1 Silent p.I299I 0.27 TCGA-ER-A195-06 7 74565159 74565159 C T GTF2IRD2B 3'UTR 0.15 TCGA-ER-A195-06 7 81579598 81579598 G A CACNA2D1 3'UTR 0.44 TCGA-ER-A195-06 7 82579500 82579500 C T PCLO Silent p.V3468V 0.21 TCGA-ER-A195-06 7 82784478 82784478 C T PCLO Silent p.Q493Q 0.25 TCGA-ER-A195-06 7 92163784 92163784 C T RBM48 Missense_Mutation p.H173Y 0.30 tolerated(0.62) benign(0.007) TCGA-ER-A195-06 7 92762117 92762117 G A SAMD9L Silent p.S1056S 0.29 TCGA-ER-A195-06 8 105160846 105160846 C T RIMS2 Intron 0.29 TCGA-ER-A195-06 8 114111080 114111080 C T CSMD3 Silent p.E274E 0.23 TCGA-ER-A195-06 8 13959988 13959988 G A SGCZ Missense_Mutation p.S214F 0.35 deleterious(0) possibly_damaging(0.877) TCGA-ER-A195-06 8 140630489 140630489 C T KCNK9 3'UTR 0.21 TCGA-ER-A195-06 8 144995445 144995445 G A PLEC Silent p.D2985D 0.18 TCGA-ER-A195-06 8 18729517 18729517 C T PSD3 Missense_Mutation p.R286Q 0.22 tolerated_low_confidence(0.41) benign(0.003) TCGA-ER-A195-06 8 23185951 23185951 C T LOXL2 Missense_Mutation p.R365K 0.38 deleterious(0) probably_damaging(0.995) TCGA-ER-A195-06 8 24333986 24333986 G A ADAM7 Missense_Mutation p.R225Q 0.42 deleterious(0.01) probably_damaging(1) TCGA-ER-A195-06 8 6360600 6360600 T C ANGPT2 3'UTR 0.42 TCGA-ER-A195-06 8 73849489 73849489 C T KCNB2 Silent p.F633F 0.23 TCGA-ER-A195-06 8 87226673 87226673 T A SLC7A13 Missense_Mutation p.N461I 0.37 deleterious(0) probably_damaging(0.928) TCGA-ER-A195-06 8 88885814 88885814 G A DCAF4L2 Missense_Mutation p.S129F 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-ER-A195-06 8 91031344 91031344 C T DECR1 Missense_Mutation p.P121S 0.21 tolerated(0.16) possibly_damaging(0.761) TCGA-ER-A195-06 8 91031345 91031345 C T DECR1 Missense_Mutation p.P121L 0.21 tolerated(0.16) probably_damaging(0.99) TCGA-ER-A195-06 9 110086177 110086177 C T RAD23B Missense_Mutation p.P275L 0.33 deleterious(0) probably_damaging(0.982) TCGA-ER-A195-06 9 113445027 113445027 G A MUSK Silent p.V51V 0.40 TCGA-ER-A195-06 9 113563219 113563219 G A MUSK Missense_Mutation p.R854Q 0.33 tolerated(0.17) probably_damaging(0.992) TCGA-ER-A195-06 9 116835233 116835233 C T AMBP Silent p.E176E 0.38 TCGA-ER-A195-06 9 119625945 119625945 G A ASTN2 Missense_Mutation p.R602C 0.33 deleterious(0) unknown(0) TCGA-ER-A195-06 9 120475214 120475214 G A TLR4 Missense_Mutation p.E270K 0.35 tolerated(0.51) benign(0.006) TCGA-ER-A195-06 9 121929767 121929767 G A BRINP1 Silent p.T627T 0.26 TCGA-ER-A195-06 9 125273977 125273977 G A OR1J2 Silent p.E299E 0.19 TCGA-ER-A195-06 9 125486790 125486790 C T OR1L4 Silent p.I174I 0.15 TCGA-ER-A195-06 9 126319882 126319882 G A DENND1A Silent p.F320F 0.35 TCGA-ER-A195-06 9 128099780 128099780 C T GAPVD1 Silent p.L956L 0.33 TCGA-ER-A195-06 9 133780666 133780666 C T FIBCD1 Missense_Mutation p.E361K 0.17 tolerated(0.11) benign(0.264) TCGA-ER-A195-06 9 136277596 136277596 C A REXO4 Missense_Mutation p.A245S 0.24 deleterious(0) probably_damaging(0.971) TCGA-ER-A195-06 9 136536688 136536688 G A SARDH Silent p.Y765Y 0.29 TCGA-ER-A195-06 9 139370595 139370595 G A SEC16A Silent p.P491P 0.43 TCGA-ER-A195-06 9 141016151 141016151 G A CACNA1B Silent p.Q2240Q 0.21 TCGA-ER-A195-06 9 14851345 14851345 G A FREM1 Silent p.L363L 0.36 TCGA-ER-A195-06 9 43630635 43630635 G A SPATA31A6 Missense_Mutation p.P23S 0.45 tolerated(0.89) probably_damaging(0.986) TCGA-ER-A195-06 9 79321336 79321336 C T PRUNE2 Missense_Mutation p.E1952K 0.40 tolerated(0.21) benign(0.13) TCGA-ER-A195-06 9 8528596 8528596 C T PTPRD Missense_Mutation p.R179Q 0.41 deleterious(0.02) probably_damaging(0.991) TCGA-ER-A195-06 9 94487360 94487360 C T ROR2 Silent p.A472A 0.30 TCGA-ER-A195-06 X 106096799 106096799 T G TBC1D8B Silent p.V724V 0.51 TCGA-ER-A195-06 X 135426620 135426620 C T GPR112 Missense_Mutation p.P252L 0.62 tolerated(0.14) benign(0.003) TCGA-ER-A195-06 X 140995273 140995273 C T MAGEC1 Missense_Mutation p.P695S 0.55 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-ER-A195-06 X 14625275 14625275 G A GLRA2 Silent p.L200L 0.49 TCGA-ER-A195-06 X 155227415 155227415 C T IL9R 5'UTR 0.25 TCGA-ER-A195-06 X 22056523 22056523 G A PHEX Intron 0.53 TCGA-ER-A195-06 X 3021865 3021865 G A ARSF Missense_Mutation p.G389R 0.76 tolerated(0.11) possibly_damaging(0.869) TCGA-ER-A195-06 X 49846336 49846336 T A CLCN5 Nonsense_Mutation p.Y255* 0.34 TCGA-ER-A195-06 X 54985314 54985314 G A PFKFB1 Silent p.I143I 0.48 TCGA-ER-A195-06 X 99956964 99956964 G A SYTL4 Nonsense_Mutation p.R24* 0.40 TCGA-ER-A196-01 10 75302825 75302825 G A USP54 Missense_Mutation p.A147V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A196-01 11 22391731 22391731 C T SLC17A6 Silent p.S346S 0.11 TCGA-ER-A196-01 11 56020308 56020308 G C OR5T3 Missense_Mutation p.M211I 0.10 tolerated(1) benign(0.001) TCGA-ER-A196-01 12 108127952 108127952 G A PRDM4 3'UTR 0.12 TCGA-ER-A196-01 12 4835840 4835840 C - GALNT8 Frame_Shift_Del p.F119Sfs*72 0.12 TCGA-ER-A196-01 13 32768296 32768296 G A FRY Missense_Mutation p.C1203Y 0.15 tolerated(0.06) possibly_damaging(0.603) TCGA-ER-A196-01 16 24366269 24366269 C T CACNG3 Silent p.S137S 0.13 TCGA-ER-A196-01 17 7497597 7497597 G A FXR2 Nonsense_Mutation p.R327* 0.20 TCGA-ER-A196-01 18 29041337 29041337 G A DSG3 Missense_Mutation p.D321N 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A196-01 18 2960762 2960762 G C LPIN2 Missense_Mutation p.T26S 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A196-01 19 43348647 43348647 A G PSG10P RNA 0.12 TCGA-ER-A196-01 19 50412893 50412893 C A NUP62 Missense_Mutation p.G58C 0.10 deleterious(0.01) possibly_damaging(0.817) TCGA-ER-A196-01 1 110584240 110584240 C T STRIP1 Missense_Mutation p.R245W 0.09 deleterious(0.01) probably_damaging(0.938) TCGA-ER-A196-01 1 159900501 159900501 G A IGSF9 Silent p.I598I 0.11 TCGA-ER-A196-01 1 33361571 33361572 - TG TMEM54 Splice_Site p.X71_splice 0.23 TCGA-ER-A196-01 20 20616254 20616254 G T RALGAPA2 Silent p.P271P 0.14 TCGA-ER-A196-01 22 24982184 24982184 C T FAM211B Silent p.A206A 0.10 TCGA-ER-A196-01 2 179504471 179504471 G A TTN Missense_Mutation p.P13611S 0.15 TCGA-ER-A196-01 3 122419866 122419866 C G PARP14 Missense_Mutation p.A822G 0.14 deleterious(0.01) possibly_damaging(0.52) TCGA-ER-A196-01 3 186507006 186507007 TC - EIF4A2 Frame_Shift_Del p.F391Lfs*14 0.09 TCGA-ER-A196-01 3 39144332 39144332 T C GORASP1 Missense_Mutation p.N62S 0.09 tolerated(0.1) benign(0.22) TCGA-ER-A196-01 4 10445874 10445874 C - ZNF518B Frame_Shift_Del p.Q694Rfs*78 0.17 TCGA-ER-A196-01 4 85419136 85419136 G A NKX6-1 Silent p.S82S 0.21 TCGA-ER-A196-01 6 26444257 26444257 A C BTN3A3 Missense_Mutation p.H53P 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-ER-A196-01 7 88964944 88964944 T C ZNF804B Missense_Mutation p.L883P 0.13 tolerated(0.31) possibly_damaging(0.794) TCGA-ER-A196-01 7 88966031 88966031 T C ZNF804B Silent p.P1245P 0.22 TCGA-ER-A196-01 8 100568870 100568870 T G VPS13B Missense_Mutation p.N1671K 0.45 deleterious(0) probably_damaging(0.932) TCGA-ER-A196-01 X 152612596 152612596 C T ZNF275 Silent p.H151H 0.18 TCGA-ER-A196-01 X 70514152 70514152 C T NONO Missense_Mutation p.R142C 0.10 deleterious(0.03) benign(0.105) TCGA-ER-A197-06 10 124457787 124457787 G A C10orf120 Missense_Mutation p.P157L 0.11 deleterious(0) probably_damaging(0.956) TCGA-ER-A197-06 10 90982327 90982327 C T LIPA Missense_Mutation p.V279I 0.15 tolerated(0.07) possibly_damaging(0.625) TCGA-ER-A197-06 11 3114832 3114832 C T OSBPL5 Missense_Mutation p.S624N 0.10 deleterious(0.04) benign(0.297) TCGA-ER-A197-06 11 55587107 55587107 T C OR5D18 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ER-A197-06 12 57905574 57905574 G A MARS Missense_Mutation p.D488N 0.14 deleterious(0) possibly_damaging(0.722) TCGA-ER-A197-06 13 103513872 103513872 T C BIVM-ERCC5 Missense_Mutation p.S656P 0.16 deleterious(0) probably_damaging(0.959) TCGA-ER-A197-06 13 29287597 29287597 T C SLC46A3 Missense_Mutation p.I94V 0.38 tolerated(0.41) benign(0.001) TCGA-ER-A197-06 14 50805722 50805722 T C CDKL1 Silent p.Q228Q 0.15 TCGA-ER-A197-06 15 73570504 73570504 C A NEO1 Missense_Mutation p.P1076T 0.10 tolerated(0.4) benign(0.004) TCGA-ER-A197-06 15 83335548 83335548 C A AP3B2 Missense_Mutation p.K601N 0.09 deleterious(0.01) possibly_damaging(0.601) TCGA-ER-A197-06 16 78466443 78466443 A G WWOX Missense_Mutation p.K284E 0.14 tolerated(0.35) benign(0.007) TCGA-ER-A197-06 17 3985756 3985756 A G ZZEF1 Missense_Mutation p.F897L 0.37 tolerated(0.1) probably_damaging(0.998) TCGA-ER-A197-06 17 40010209 40010209 T A KLHL11 Missense_Mutation p.E637V 0.12 tolerated(0.16) possibly_damaging(0.654) TCGA-ER-A197-06 17 55027963 55027963 G C COIL Missense_Mutation p.Q214E 0.25 tolerated(0.22) benign(0.228) TCGA-ER-A197-06 17 7612700 7612700 C T EFNB3 Silent p.L277L 0.55 TCGA-ER-A197-06 18 5891622 5891622 C T TMEM200C Silent p.T147T 0.15 TCGA-ER-A197-06 19 40480736 40480736 G C PSMC4 Splice_Site p.X225_splice 0.07 TCGA-ER-A197-06 19 43259214 43259214 G C PSG8 Missense_Mutation p.T305R 0.04 tolerated(0.12) benign(0.05) TCGA-ER-A197-06 1 107691255 107691255 G A NTNG1 Missense_Mutation p.V14I 0.07 tolerated_low_confidence(0.1) benign(0.23) TCGA-ER-A197-06 1 156104644 156104644 G T LMNA Missense_Mutation p.D230Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-ER-A197-06 1 28241187 28241187 T C RPA2 5'UTR 0.44 TCGA-ER-A197-06 1 28904082 28904082 C T TRNAU1AP Silent p.D266D 0.07 TCGA-ER-A197-06 20 23029065 23029065 G A THBD Silent p.D359D 0.11 TCGA-ER-A197-06 21 41561098 41561098 G A DSCAM Silent p.S808S 0.11 TCGA-ER-A197-06 22 18650053 18650053 C T USP18 Silent p.Y144Y 0.27 TCGA-ER-A197-06 22 30419457 30419457 G A MTMR3 Intron 0.19 TCGA-ER-A197-06 2 201499523 201499523 A C AOX1 Missense_Mutation p.H744P 0.12 deleterious(0) probably_damaging(0.953) TCGA-ER-A197-06 3 13415274 13415274 A C NUP210 Missense_Mutation p.F511V 0.17 tolerated(0.56) benign(0) TCGA-ER-A197-06 3 134670614 134670614 C T EPHB1 Silent p.L175L 0.06 TCGA-ER-A197-06 3 17052663 17052663 G A PLCL2 Missense_Mutation p.V483M 0.11 tolerated(0.19) benign(0.177) TCGA-ER-A197-06 3 58120488 58120488 G C FLNB Missense_Mutation p.V1585L 0.08 tolerated(0.07) possibly_damaging(0.512) TCGA-ER-A197-06 4 185552246 185552246 C T CASP3 Silent p.A183A 0.18 TCGA-ER-A197-06 4 2242641 2242641 T A HAUS3 Missense_Mutation p.L11F 0.08 deleterious(0) probably_damaging(0.999) TCGA-ER-A197-06 4 46314618 46314618 G T GABRA2 Missense_Mutation p.P124Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-ER-A197-06 4 72400068 72400068 C T SLC4A4 Missense_Mutation p.T802I 0.25 deleterious(0) probably_damaging(0.993) TCGA-ER-A197-06 5 132051998 132051998 C T KIF3A Missense_Mutation p.R298H 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A197-06 5 33631008 33631008 A G ADAMTS12 Silent p.C633C 0.08 TCGA-ER-A197-06 5 37125477 37125477 T C C5orf42 Missense_Mutation p.T2889A 0.11 deleterious(0.01) possibly_damaging(0.797) TCGA-ER-A197-06 6 128306985 128306985 G T PTPRK Missense_Mutation p.F1050L 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-ER-A197-06 6 13365622 13365622 C T GFOD1 Missense_Mutation p.V176M 0.23 tolerated(0.27) possibly_damaging(0.532) TCGA-ER-A197-06 6 30522617 30522617 C G GNL1 Missense_Mutation p.S151T 0.16 tolerated(0.43) benign(0.09) TCGA-ER-A197-06 6 53660191 53660191 A G LRRC1 Missense_Mutation p.N46S 0.19 deleterious(0) possibly_damaging(0.458) TCGA-ER-A197-06 7 100549654 100549654 A T MUC3A Missense_Mutation p.T79S 0.09 tolerated(0.34) unknown(0) TCGA-ER-A197-06 7 143054020 143054020 C G FAM131B Missense_Mutation p.D236H 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A197-06 7 22767201 22767201 T C IL6 Missense_Mutation p.I53T 0.19 tolerated(1) benign(0.003) TCGA-ER-A197-06 8 120103450 120103450 G T COLEC10 Missense_Mutation p.G95W 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A197-06 8 35606133 35606133 A G UNC5D Missense_Mutation p.T619A 0.07 tolerated(0.26) possibly_damaging(0.688) TCGA-ER-A197-06 8 54142230 54142230 C T OPRK1 Missense_Mutation p.R257Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A197-06 9 133779710 133779710 C T FIBCD1 Missense_Mutation p.G376D 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A197-06 X 117043438 117043438 T C KLHL13 Missense_Mutation p.S401G 0.10 tolerated(0.16) possibly_damaging(0.839) TCGA-ER-A197-06 X 135574443 135574443 C T BRS3 Missense_Mutation p.T370M 0.09 tolerated(0.25) benign(0.001) TCGA-ER-A197-06 X 7243499 7243499 A G STS Missense_Mutation p.T406A 0.14 deleterious(0) probably_damaging(0.99) TCGA-ER-A198-06 10 101458474 101458474 C T ENTPD7 Silent p.A398A 0.32 TCGA-ER-A198-06 10 103871230 103871230 G A LDB1 Missense_Mutation p.P30L 0.28 deleterious_low_confidence(0.05) probably_damaging(0.981) TCGA-ER-A198-06 10 105762870 105762870 C T SLK Missense_Mutation p.S645L 0.26 tolerated(0.24) benign(0.002) TCGA-ER-A198-06 10 124608939 124608939 C T FAM24B Missense_Mutation p.E37K 0.31 tolerated(0.58) benign(0.011) TCGA-ER-A198-06 10 128114580 128114580 G A C10orf90 Missense_Mutation p.R681C 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 10 135197568 135197568 C T PAOX Silent p.L325L 0.37 TCGA-ER-A198-06 10 15256350 15256350 G A FAM171A1 Missense_Mutation p.P413S 0.23 deleterious(0) probably_damaging(0.995) TCGA-ER-A198-06 10 15256351 15256351 G A FAM171A1 Silent p.T412T 0.23 TCGA-ER-A198-06 10 25886955 25886955 G A GPR158 Silent p.G800G 0.38 TCGA-ER-A198-06 10 27687339 27687339 G A PTCHD3 Missense_Mutation p.P730S 0.28 tolerated(0.22) benign(0.259) TCGA-ER-A198-06 10 35896519 35896519 C T GJD4 Silent p.F26F 0.30 TCGA-ER-A198-06 10 37419198 37419198 C T ANKRD30A Silent p.L78L 0.40 TCGA-ER-A198-06 10 38407566 38407566 G A ZNF37A Missense_Mutation p.G496E 0.33 tolerated(1) benign(0.005) TCGA-ER-A198-06 10 48389174 48389174 G A RBP3 Silent p.I568I 0.47 TCGA-ER-A198-06 10 5037948 5037948 C T AKR1C2 Nonsense_Mutation p.W227* 0.43 TCGA-ER-A198-06 10 70192195 70192195 G A DNA2 Silent p.T659T 0.27 TCGA-ER-A198-06 10 70946256 70946256 C T SUPV3L1 Missense_Mutation p.S136F 0.29 tolerated(0.11) benign(0.003) TCGA-ER-A198-06 10 71707089 71707089 G A COL13A1 Silent p.K672K 0.30 TCGA-ER-A198-06 10 735477 735477 C T DIP2C Silent p.E14E 0.29 TCGA-ER-A198-06 10 75204540 75204540 G A PPP3CB Missense_Mutation p.P438S 0.45 deleterious(0.01) possibly_damaging(0.831) TCGA-ER-A198-06 10 75553738 75553738 C T ZSWIM8 Missense_Mutation p.A854V 0.38 deleterious(0) probably_damaging(0.994) TCGA-ER-A198-06 10 79781924 79781924 G A POLR3A Silent p.F288F 0.31 TCGA-ER-A198-06 10 87482774 87482774 C T GRID1 Missense_Mutation p.M661I 0.23 tolerated(0.37) probably_damaging(0.989) TCGA-ER-A198-06 10 91099111 91099111 C T IFIT3 Silent p.A233A 0.44 TCGA-ER-A198-06 10 95791308 95791308 C T PLCE1 Nonsense_Mutation p.Q169* 0.46 TCGA-ER-A198-06 10 96522566 96522566 C T CYP2C19 Missense_Mutation p.P35L 0.42 deleterious(0.01) benign(0.438) TCGA-ER-A198-06 10 99696020 99696020 G A CRTAC1 Missense_Mutation p.R110W 0.38 tolerated(0.14) probably_damaging(0.975) TCGA-ER-A198-06 10 99696021 99696021 G A CRTAC1 Silent p.D109D 0.37 TCGA-ER-A198-06 11 102650388 102650388 C T MMP10 Missense_Mutation p.G65E 0.43 tolerated(1) benign(0) TCGA-ER-A198-06 11 105950416 105950416 C T AASDHPPT Missense_Mutation p.P136S 0.23 tolerated(0.18) probably_damaging(0.956) TCGA-ER-A198-06 11 113283578 113283578 C T DRD2 Missense_Mutation p.E280K 0.36 tolerated(0.55) benign(0.098) TCGA-ER-A198-06 11 113661574 113661574 G T ATF4P4 RNA 0.45 TCGA-ER-A198-06 11 114393070 114393070 C T NXPE1 Missense_Mutation p.E280K 0.37 tolerated(0.12) possibly_damaging(0.457) TCGA-ER-A198-06 11 114453428 114453428 G T NXPE4 Missense_Mutation p.L138M 0.43 deleterious(0.04) possibly_damaging(0.725) TCGA-ER-A198-06 11 114569081 114569081 C T NXPE2 Silent p.F149F 0.58 TCGA-ER-A198-06 11 117167627 117167627 G A BACE1 Silent p.A104A 0.28 TCGA-ER-A198-06 11 119059780 119059780 G A PDZD3 Missense_Mutation p.G452R 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 11 121384924 121384924 C T SORL1 Missense_Mutation p.R369C 0.25 tolerated(0.19) benign(0.001) TCGA-ER-A198-06 11 123479417 123479417 G A GRAMD1B Missense_Mutation p.E379K 0.67 tolerated(0.59) probably_damaging(0.993) TCGA-ER-A198-06 11 123814355 123814355 C T OR6T1 Missense_Mutation p.R64Q 0.36 tolerated(0.39) benign(0.006) TCGA-ER-A198-06 11 123848357 123848357 C T OR10S1 Silent p.T14T 0.37 TCGA-ER-A198-06 11 124180280 124180280 C T OR8D1 Missense_Mutation p.S128N 0.41 tolerated(1) benign(0.004) TCGA-ER-A198-06 11 124310178 124310178 C T OR8B8 Missense_Mutation p.M268I 0.42 deleterious_low_confidence(0.04) benign(0.061) TCGA-ER-A198-06 11 1268818 1268818 G A MUC5B Missense_Mutation p.G3570S 0.39 possibly_damaging(0.53) TCGA-ER-A198-06 11 128781567 128781567 C T KCNJ5 Silent p.L133L 0.44 TCGA-ER-A198-06 11 1977578 1977578 C T MRPL23 Silent p.L130L 0.57 TCGA-ER-A198-06 11 2436058 2436058 C T TRPM5 Missense_Mutation p.G544D 0.56 deleterious(0) probably_damaging(0.951) TCGA-ER-A198-06 11 2436059 2436059 C T TRPM5 Missense_Mutation p.G544S 0.57 tolerated(0.75) possibly_damaging(0.453) TCGA-ER-A198-06 11 3380423 3380423 G A ZNF195 Silent p.P605P 0.41 TCGA-ER-A198-06 11 36293292 36293292 G A COMMD9 3'Flank 0.23 TCGA-ER-A198-06 11 36293293 36293293 G A COMMD9 3'Flank 0.24 TCGA-ER-A198-06 11 3723826 3723826 G A NUP98 Missense_Mutation p.R1127C 0.47 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 11 43702463 43702463 C T HSD17B12 Missense_Mutation p.S29L 0.31 tolerated(0.7) benign(0.009) TCGA-ER-A198-06 11 4389346 4389346 G A OR52B4 Silent p.P60P 0.27 TCGA-ER-A198-06 11 4842823 4842823 C T OR51F2 Missense_Mutation p.H70Y 0.40 deleterious(0) probably_damaging(0.993) TCGA-ER-A198-06 11 49598421 49598421 G A RP11-707M1.1 RNA 0.29 TCGA-ER-A198-06 11 5020323 5020323 T A OR51L1 Nonsense_Mutation p.Y37* 0.35 TCGA-ER-A198-06 11 5020909 5020909 C T OR51L1 Missense_Mutation p.R233C 0.31 deleterious(0.03) possibly_damaging(0.806) TCGA-ER-A198-06 11 5529829 5529829 C T UBQLN3 Silent p.Q320Q 0.38 TCGA-ER-A198-06 11 56184738 56184738 T A OR5R1 Missense_Mutation p.Y324F 0.44 tolerated_low_confidence(0.43) unknown(0) TCGA-ER-A198-06 11 5863035 5863035 G A OR52E6 Silent p.F31F 0.35 TCGA-ER-A198-06 11 59857807 59857815 AGGTAACAC - MS4A2 Splice_Site p.X63_splice 0.19 TCGA-ER-A198-06 11 608886 608886 G A PHRF1 Missense_Mutation p.E1143K 0.38 deleterious(0.01) possibly_damaging(0.81) TCGA-ER-A198-06 11 62367695 62367695 G A MTA2 Missense_Mutation p.L45F 0.42 tolerated(1) probably_damaging(0.93) TCGA-ER-A198-06 11 63449115 63449115 G C RTN3 Missense_Mutation p.E3Q 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ER-A198-06 11 64390505 64390505 C T NRXN2 Missense_Mutation p.G1298E 0.44 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 11 64726820 64726820 G A C11orf85 Missense_Mutation p.P20S 0.30 tolerated(0.46) benign(0.001) TCGA-ER-A198-06 11 64875963 64875963 C T VPS51 Silent p.F340F 0.51 TCGA-ER-A198-06 11 64882836 64882836 C T TM7SF2 Nonsense_Mutation p.R315* 0.29 TCGA-ER-A198-06 11 6623270 6623270 C T RRP8 Missense_Mutation p.G92E 0.35 deleterious_low_confidence(0.01) benign(0.021) TCGA-ER-A198-06 11 66619376 66619376 G A PC Missense_Mutation p.P623S 0.52 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 11 68331819 68331819 T C PPP6R3 Silent p.A298A 0.47 TCGA-ER-A198-06 11 7111038 7111038 G A RBMXL2 Silent p.R229R 0.33 TCGA-ER-A198-06 11 71146730 71146730 C T DHCR7 Silent p.R373R 0.35 TCGA-ER-A198-06 11 71510680 71510680 G A FAM86C1 Missense_Mutation p.R162K 0.32 tolerated_low_confidence(0.08) benign(0.001) TCGA-ER-A198-06 11 7949601 7949601 G A OR10A6 Silent p.T203T 0.43 TCGA-ER-A198-06 11 86159199 86159199 G A ME3 Silent p.A410A 0.41 TCGA-ER-A198-06 11 89028466 89028466 C T TYR Missense_Mutation p.P508S 0.33 tolerated(0.99) benign(0.001) TCGA-ER-A198-06 11 94113452 94113452 G A GPR83 Missense_Mutation p.P379S 0.33 tolerated(0.05) benign(0.061) TCGA-ER-A198-06 12 102439876 102439876 G A CCDC53 Missense_Mutation p.R58C 0.50 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 12 108986066 108986066 C T TMEM119 Missense_Mutation p.A32T 0.37 tolerated(0.24) benign(0.054) TCGA-ER-A198-06 12 10954483 10954483 G A TAS2R7 Silent p.A229A 0.46 TCGA-ER-A198-06 12 11035025 11035025 G A PRH1 Missense_Mutation p.P104S 0.22 tolerated_low_confidence(0.24) unknown(0) TCGA-ER-A198-06 12 110765358 110765358 G A ATP2A2 Missense_Mutation p.G211S 0.31 deleterious(0.03) possibly_damaging(0.889) TCGA-ER-A198-06 12 113534561 113534561 C T DTX1 Silent p.I560I 0.25 TCGA-ER-A198-06 12 11506270 11506270 G A PRB1 Missense_Mutation p.P123L 0.39 deleterious_low_confidence(0.03) unknown(0) TCGA-ER-A198-06 12 120159206 120159206 G A CIT Missense_Mutation p.R1214C 0.32 deleterious(0) probably_damaging(0.991) TCGA-ER-A198-06 12 122295239 122295239 C T HPD Missense_Mutation p.G65R 0.32 tolerated(0.08) benign(0.083) TCGA-ER-A198-06 12 123821031 123821031 G A SBNO1 Missense_Mutation p.P220L 0.41 deleterious(0.05) benign(0.114) TCGA-ER-A198-06 12 123821032 123821032 G A SBNO1 Missense_Mutation p.P220S 0.41 tolerated(0.14) benign(0.114) TCGA-ER-A198-06 12 123900458 123900458 G A RILPL2 Nonsense_Mutation p.R206* 0.39 TCGA-ER-A198-06 12 125453415 125453415 T A DHX37 Nonsense_Mutation p.K431* 0.30 TCGA-ER-A198-06 12 126004087 126004087 G A TMEM132B Silent p.P398P 0.41 TCGA-ER-A198-06 12 1967792 1967792 G A CACNA2D4 Silent p.S653S 0.55 TCGA-ER-A198-06 12 1983830 1983830 G A CACNA2D4 Silent p.A606A 0.36 TCGA-ER-A198-06 12 22215349 22215349 G A CMAS Nonsense_Mutation p.W365* 0.30 TCGA-ER-A198-06 12 2719802 2719802 C T CACNA1C Silent p.S1238S 0.40 TCGA-ER-A198-06 12 31814890 31814890 G A METTL20 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-ER-A198-06 12 32945415 32945415 C T PKP2 Silent p.K863K 0.48 TCGA-ER-A198-06 12 39726695 39726695 C T KIF21A Missense_Mutation p.R901K 0.39 tolerated(0.06) benign(0.057) TCGA-ER-A198-06 12 40020150 40020150 C T C12orf40 Silent p.V4V 0.26 TCGA-ER-A198-06 12 40631877 40631877 C G LRRK2 Missense_Mutation p.C181W 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 12 46582729 46582729 G A SLC38A1 3'UTR 0.37 TCGA-ER-A198-06 12 48361033 48361033 G A TMEM106C Silent p.V215V 0.37 TCGA-ER-A198-06 12 5021216 5021216 G A KCNA1 Silent p.V224V 0.35 TCGA-ER-A198-06 12 53041570 53041570 C T KRT2 Missense_Mutation p.E398K 0.25 deleterious(0) possibly_damaging(0.733) TCGA-ER-A198-06 12 53818634 53818634 C T AMHR2 Missense_Mutation p.P125L 0.32 tolerated(0.05) possibly_damaging(0.713) TCGA-ER-A198-06 12 55688891 55688891 G A OR6C6 Silent p.I42I 0.33 TCGA-ER-A198-06 12 56094719 56094719 G C ITGA7 Missense_Mutation p.L212V 0.43 tolerated(0.46) benign(0.015) TCGA-ER-A198-06 12 56716906 56716906 C T PAN2 Missense_Mutation p.M815I 0.41 tolerated(0.19) possibly_damaging(0.747) TCGA-ER-A198-06 12 57911062 57911062 C T DDIT3 Missense_Mutation p.G66E 0.41 tolerated(0.73) benign(0.018) TCGA-ER-A198-06 12 71139615 71139615 G A PTPRR Silent p.P330P 0.41 TCGA-ER-A198-06 12 7249398 7249398 C A C1RL Silent p.L351L 0.28 TCGA-ER-A198-06 12 72893288 72893288 G A TRHDE Missense_Mutation p.R487K 0.41 deleterious(0.02) possibly_damaging(0.676) TCGA-ER-A198-06 12 72893289 72893289 G A TRHDE Silent p.R487R 0.41 TCGA-ER-A198-06 12 7982478 7982478 C T SLC2A14 Missense_Mutation p.G156R 0.28 deleterious(0) probably_damaging(0.989) TCGA-ER-A198-06 12 81833757 81833757 A C PPFIA2 Missense_Mutation p.N213K 0.33 tolerated(0.46) benign(0.138) TCGA-ER-A198-06 12 88379629 88379629 G T C12orf50 Missense_Mutation p.P375Q 0.29 tolerated(0.06) possibly_damaging(0.767) TCGA-ER-A198-06 12 971371 971371 G A WNK1 Missense_Mutation p.G692R 0.33 tolerated(0.05) unknown(0) TCGA-ER-A198-06 13 111368079 111368079 C T ING1 Missense_Mutation p.P97S 0.62 tolerated_low_confidence(0.57) benign(0) TCGA-ER-A198-06 13 113055406 113055406 C T SPACA7 Missense_Mutation p.H125Y 0.35 deleterious(0.03) benign(0.198) TCGA-ER-A198-06 13 113153388 113153388 C T TUBGCP3 Missense_Mutation p.E807K 0.33 tolerated(0.06) benign(0.01) TCGA-ER-A198-06 13 113783888 113783888 G A F10 Missense_Mutation p.E65K 0.20 deleterious(0) probably_damaging(0.996) TCGA-ER-A198-06 13 28636206 28636206 C T FLT3 Missense_Mutation p.V56I 0.31 tolerated_low_confidence(0.72) benign(0.002) TCGA-ER-A198-06 13 32339209 32339209 G A RXFP2 Missense_Mutation p.E119K 0.42 tolerated(0.56) benign(0.001) TCGA-ER-A198-06 13 39266618 39266618 G A FREM2 Missense_Mutation p.D1713N 0.28 tolerated(0.14) benign(0.001) TCGA-ER-A198-06 13 45515216 45515216 C T NUFIP1 3'UTR 0.33 TCGA-ER-A198-06 13 61986097 61986097 A G PCDH20 Missense_Mutation p.V712A 0.38 deleterious(0) possibly_damaging(0.593) TCGA-ER-A198-06 13 61987196 61987196 C T PCDH20 Missense_Mutation p.D346N 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 13 95830039 95830039 T C ABCC4 Missense_Mutation p.Y550C 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.33 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 14 21469563 21469563 G A SLC39A2 Missense_Mutation p.G252E 0.31 tolerated(0.24) benign(0.026) TCGA-ER-A198-06 14 23868084 23868084 G A MYH6 Missense_Mutation p.H582Y 0.30 deleterious(0) probably_damaging(0.947) TCGA-ER-A198-06 14 38016170 38016170 G A MIPOL1 Silent p.V441V 0.34 TCGA-ER-A198-06 14 50587031 50587031 G A SOS2 Missense_Mutation p.P1151S 0.36 tolerated(0.07) probably_damaging(0.996) TCGA-ER-A198-06 14 71202707 71202707 G A MAP3K9 Silent p.T628T 0.30 TCGA-ER-A198-06 14 74531550 74531550 C T ALDH6A1 Missense_Mutation p.G493E 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 14 74727431 74727431 G A VSX2 Missense_Mutation p.E299K 0.38 deleterious(0) probably_damaging(0.988) TCGA-ER-A198-06 14 75513442 75513442 G A MLH3 Missense_Mutation p.P973S 0.36 tolerated(0.25) benign(0.009) TCGA-ER-A198-06 14 89091324 89091324 T A EML5 Nonsense_Mutation p.K1630* 0.44 TCGA-ER-A198-06 14 92559603 92559603 C T ATXN3 Missense_Mutation p.G127E 0.22 deleterious(0) probably_damaging(0.969) TCGA-ER-A198-06 14 94931161 94931161 G A SERPINA9 Silent p.S329S 0.38 TCGA-ER-A198-06 15 22382814 22382814 C T OR4N4 Silent p.L114L 0.25 TCGA-ER-A198-06 15 25415936 25415936 G A SNORD115-1 RNA 0.32 TCGA-ER-A198-06 15 28544556 28544556 G A HERC2 Missense_Mutation p.P60L 0.34 benign(0) TCGA-ER-A198-06 15 42456603 42456603 G A VPS39 Missense_Mutation p.S660F 0.44 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 15 43893647 43893647 C T STRC Missense_Mutation p.D1550N 0.63 tolerated(0.4) probably_damaging(0.98) TCGA-ER-A198-06 15 43893648 43893648 C T STRC Silent p.V1549V 0.63 TCGA-ER-A198-06 15 50226379 50226379 C T ATP8B4 Missense_Mutation p.E430K 0.38 tolerated(1) benign(0.003) TCGA-ER-A198-06 15 51975628 51975628 C T SCG3 Nonsense_Mutation p.Q132* 0.66 TCGA-ER-A198-06 15 54305830 54305830 G A UNC13C Missense_Mutation p.E244K 0.52 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ER-A198-06 15 63935234 63935234 A T HERC1 Silent p.V3785V 0.42 TCGA-ER-A198-06 15 72172075 72172075 G A MYO9A Missense_Mutation p.S1909L 0.43 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 15 74244248 74244248 C T LOXL1 3'UTR 0.55 TCGA-ER-A198-06 15 75650637 75650637 G A MAN2C1 Missense_Mutation p.R835C 0.28 tolerated(0.11) possibly_damaging(0.663) TCGA-ER-A198-06 15 79092798 79092798 G A ADAMTS7 Silent p.P64P 0.27 TCGA-ER-A198-06 15 83926322 83926322 G A BNC1 Missense_Mutation p.R953W 0.39 deleterious(0) probably_damaging(0.941) TCGA-ER-A198-06 15 92459369 92459369 C T SLCO3A1 Silent p.I109I 0.52 TCGA-ER-A198-06 16 1544344 1544344 C T TELO2 Missense_Mutation p.S21F 0.38 deleterious(0) possibly_damaging(0.873) TCGA-ER-A198-06 16 1821167 1821167 G A NME3 Silent p.S61S 0.48 TCGA-ER-A198-06 16 1821168 1821168 G A NME3 Missense_Mutation p.S61F 0.48 deleterious(0) probably_damaging(0.992) TCGA-ER-A198-06 16 19467976 19467976 G A TMC5 Intron 0.41 TCGA-ER-A198-06 16 19488761 19488761 G A TMC5 Splice_Site p.X697_splice 0.37 TCGA-ER-A198-06 16 2159610 2159610 G A PKD1 Missense_Mutation p.T1853I 0.40 benign(0.026) TCGA-ER-A198-06 16 22122279 22122279 C T VWA3A Missense_Mutation p.S218F 0.38 tolerated(0.17) benign(0.053) TCGA-ER-A198-06 16 2350068 2350068 C T ABCA3 Missense_Mutation p.E517K 0.33 tolerated(0.81) benign(0.004) TCGA-ER-A198-06 16 23635414 23635414 A T PALB2 Missense_Mutation p.V917D 0.28 deleterious(0) probably_damaging(0.963) TCGA-ER-A198-06 16 2374517 2374517 G A ABCA3 Missense_Mutation p.S112F 0.38 deleterious(0) probably_damaging(0.938) TCGA-ER-A198-06 16 26147140 26147140 G T HS3ST4 Silent p.L314L 0.34 TCGA-ER-A198-06 16 2817118 2817118 C T SRRM2 Missense_Mutation p.P2197S 0.38 probably_damaging(0.998) TCGA-ER-A198-06 16 28511060 28511060 G A IL27 Missense_Mutation p.S215F 0.36 deleterious(0.04) probably_damaging(0.931) TCGA-ER-A198-06 16 28511061 28511061 A T IL27 Missense_Mutation p.S215T 0.36 deleterious(0.02) possibly_damaging(0.655) TCGA-ER-A198-06 16 31087862 31087862 G A ZNF646 Missense_Mutation p.G73S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A198-06 16 4312327 4312327 G A TFAP4 Nonsense_Mutation p.Q118* 0.31 TCGA-ER-A198-06 16 46773972 46773972 C T MYLK3 Missense_Mutation p.E189K 0.40 deleterious(0.05) possibly_damaging(0.884) TCGA-ER-A198-06 16 4834041 4834041 C T SEPT12 Missense_Mutation p.E135K 0.29 deleterious(0.03) benign(0.053) TCGA-ER-A198-06 16 64984701 64984701 G A CDH11 Silent p.I621I 0.40 TCGA-ER-A198-06 16 66943179 66943179 C T CDH16 Missense_Mutation p.V795I 0.35 tolerated(0.93) benign(0.003) TCGA-ER-A198-06 16 67915197 67915197 C T EDC4 Missense_Mutation p.A889V 0.37 deleterious(0.04) possibly_damaging(0.71) TCGA-ER-A198-06 16 70923495 70923495 C T HYDIN Missense_Mutation p.G3257S 0.15 benign(0.031) TCGA-ER-A198-06 16 70926365 70926365 T G HYDIN Missense_Mutation p.K3106Q 0.27 possibly_damaging(0.895) TCGA-ER-A198-06 16 77850830 77850830 C T VAT1L Silent p.F82F 0.44 TCGA-ER-A198-06 16 836243 836243 G A RPUSD1 Missense_Mutation p.P216S 0.37 deleterious(0.03) probably_damaging(1) TCGA-ER-A198-06 16 840372 840372 C T CHTF18 Missense_Mutation p.A242V 0.40 deleterious(0.03) benign(0.02) TCGA-ER-A198-06 16 89849491 89849491 G A FANCA Missense_Mutation p.P497L 0.18 deleterious(0) possibly_damaging(0.713) TCGA-ER-A198-06 17 1012270 1012270 C T ABR Intron 0.39 TCGA-ER-A198-06 17 10435093 10435093 C T MYH2 Missense_Mutation p.E852K 0.42 deleterious(0.02) possibly_damaging(0.877) TCGA-ER-A198-06 17 10541369 10541369 C T MYH3 Silent p.S1240S 0.35 TCGA-ER-A198-06 17 12647604 12647604 G A MYOCD Silent p.K274K 0.28 TCGA-ER-A198-06 17 12656112 12656112 G A MYOCD Missense_Mutation p.G503R 0.31 deleterious(0.03) probably_damaging(0.962) TCGA-ER-A198-06 17 12656124 12656124 C T MYOCD Missense_Mutation p.P507S 0.41 tolerated(0.7) benign(0.006) TCGA-ER-A198-06 17 19186844 19186844 G A EPN2 Missense_Mutation p.E138K 0.34 deleterious(0) probably_damaging(0.99) TCGA-ER-A198-06 17 29283435 29283435 G A ADAP2 Silent p.L353L 0.40 TCGA-ER-A198-06 17 30192395 30192395 G A UTP6 Silent p.S542S 0.29 TCGA-ER-A198-06 17 32614112 32614112 C T CCL11 Intron 0.26 TCGA-ER-A198-06 17 38487555 38487555 C T RARA Missense_Mutation p.P29S 0.29 tolerated_low_confidence(0.1) benign(0) TCGA-ER-A198-06 17 39881132 39881132 C T HAP1 Missense_Mutation p.E561K 0.31 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-ER-A198-06 17 41168464 41168464 T C VAT1 Missense_Mutation p.N320D 0.25 deleterious(0) possibly_damaging(0.78) TCGA-ER-A198-06 17 42478301 42478301 G A GPATCH8 Nonsense_Mutation p.R382* 0.27 TCGA-ER-A198-06 17 47904136 47904136 G A KAT7 Missense_Mutation p.G570E 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A198-06 17 56573598 56573598 G A MTMR4 Silent p.N635N 0.39 TCGA-ER-A198-06 17 58299810 58299810 A G USP32 Missense_Mutation p.L570P 0.38 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 17 59885835 59885835 C T BRIP1 Missense_Mutation p.G304E 0.30 deleterious(0.03) possibly_damaging(0.826) TCGA-ER-A198-06 17 63173904 63173904 G A RGS9 Missense_Mutation p.E213K 0.28 tolerated(0.13) benign(0.051) TCGA-ER-A198-06 17 64216785 64216785 G A APOH Missense_Mutation p.S164F 0.26 tolerated(0.06) probably_damaging(0.994) TCGA-ER-A198-06 17 6554918 6554918 G A MED31 5'UTR 0.57 TCGA-ER-A198-06 17 6589483 6589483 C T SLC13A5 3'UTR 0.35 TCGA-ER-A198-06 17 66933150 66933150 A T ABCA8 Missense_Mutation p.H136Q 0.39 tolerated(0.15) benign(0.175) TCGA-ER-A198-06 17 67149465 67149465 C T ABCA10 Missense_Mutation p.E1373K 0.29 tolerated(0.5) benign(0.014) TCGA-ER-A198-06 17 71419617 71419617 G A SDK2 Missense_Mutation p.T602I 0.31 tolerated(0.17) benign(0.007) TCGA-ER-A198-06 17 72537558 72537558 C T CD300C 3'UTR 0.29 TCGA-ER-A198-06 17 73945303 73945303 G A ACOX1 Missense_Mutation p.L575F 0.36 deleterious(0) probably_damaging(0.93) TCGA-ER-A198-06 17 73945304 73945304 G A ACOX1 Silent p.F574F 0.35 TCGA-ER-A198-06 17 79478514 79478514 C T ACTG1 Missense_Mutation p.G168S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ER-A198-06 17 79478515 79478515 C T ACTG1 Silent p.E167E 0.40 TCGA-ER-A198-06 17 80043386 80043386 G A FASN Missense_Mutation p.P1365L 0.42 tolerated(0.48) benign(0.001) TCGA-ER-A198-06 17 80043387 80043387 G A FASN Missense_Mutation p.P1365S 0.42 tolerated(0.79) benign(0.002) TCGA-ER-A198-06 17 8739933 8739933 C T PIK3R6 Missense_Mutation p.G131E 0.37 deleterious(0) probably_damaging(0.993) TCGA-ER-A198-06 17 9694527 9694527 C T DHRS7C Silent p.E25E 0.28 TCGA-ER-A198-06 18 10471552 10471552 T C APCDD1 Missense_Mutation p.F90L 0.52 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 18 12325112 12325112 G A TUBB6 Silent p.E108E 0.51 TCGA-ER-A198-06 18 31319839 31319839 C T ASXL3 Missense_Mutation p.P824L 0.29 benign(0.003) TCGA-ER-A198-06 18 44595631 44595631 G A KATNAL2 Missense_Mutation p.G217E 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 18 47317897 47317897 G A ACAA2 Silent p.L276L 0.34 TCGA-ER-A198-06 18 52927224 52927224 G A TCF4 Missense_Mutation p.S444L 0.29 deleterious(0.01) probably_damaging(0.958) TCGA-ER-A198-06 18 57115233 57115233 C A CCBE1 Missense_Mutation p.G253W 0.41 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 18 72238505 72238505 G A CNDP1 Missense_Mutation p.G281S 0.35 tolerated(0.49) benign(0.198) TCGA-ER-A198-06 19 10428173 10428173 C T RAVER1 Missense_Mutation p.G743D 0.29 deleterious(0.01) probably_damaging(1) TCGA-ER-A198-06 19 10748931 10748931 C T SLC44A2 Silent p.H623H 0.30 TCGA-ER-A198-06 19 13054393 13054393 G A CALR Missense_Mutation p.D335N 0.38 deleterious(0.05) benign(0.442) TCGA-ER-A198-06 19 13919908 13919908 G A ZSWIM4 Missense_Mutation p.D296N 0.30 deleterious(0.04) possibly_damaging(0.728) TCGA-ER-A198-06 19 15533866 15533866 G A WIZ 3'UTR 0.29 TCGA-ER-A198-06 19 15770039 15770039 C T CYP4F3 Silent p.I469I 0.33 TCGA-ER-A198-06 19 15770265 15770265 C T CYP4F3 3'UTR 0.35 TCGA-ER-A198-06 19 15770266 15770266 C T CYP4F3 3'UTR 0.35 TCGA-ER-A198-06 19 16472729 16472729 G A EPS15L1 Missense_Mutation p.P816L 0.38 deleterious(0.01) possibly_damaging(0.637) TCGA-ER-A198-06 19 18709614 18709614 G A CRLF1 Silent p.L165L 0.28 TCGA-ER-A198-06 19 19115220 19115220 C T SUGP2 Missense_Mutation p.D896N 0.45 deleterious(0.03) benign(0.033) TCGA-ER-A198-06 19 22156833 22156833 G A ZNF208 Missense_Mutation p.H335Y 0.55 deleterious(0) possibly_damaging(0.885) TCGA-ER-A198-06 19 3150270 3150270 G A GNA15 Missense_Mutation p.D158N 0.33 deleterious(0) possibly_damaging(0.849) TCGA-ER-A198-06 19 36333451 36333451 C T NPHS1 Missense_Mutation p.G779E 0.37 deleterious(0.02) benign(0.424) TCGA-ER-A198-06 19 38028516 38028516 C T ZNF793 Missense_Mutation p.S319L 0.33 deleterious(0) probably_damaging(0.947) TCGA-ER-A198-06 19 38104026 38104026 C T ZNF540 Silent p.A615A 0.36 TCGA-ER-A198-06 19 38190505 38190505 C T ZNF607 Missense_Mutation p.G176E 0.40 deleterious(0.04) probably_damaging(0.958) TCGA-ER-A198-06 19 40411909 40411909 C T FCGBP Missense_Mutation p.G1240D 0.35 probably_damaging(1) TCGA-ER-A198-06 19 43519355 43519355 G A PSG11 Missense_Mutation p.P293S 0.36 tolerated(0.65) benign(0.035) TCGA-ER-A198-06 19 44832316 44832316 C T ZNF112 Missense_Mutation p.G671D 0.61 tolerated(0.11) benign(0.322) TCGA-ER-A198-06 19 47535937 47535937 G A NPAS1 Missense_Mutation p.G157R 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 19 49950644 49950644 G A PIH1D1 Nonsense_Mutation p.Q188* 0.34 TCGA-ER-A198-06 19 50464030 50464030 G A SIGLEC11 Missense_Mutation p.P80L 0.33 tolerated(0.42) benign(0.014) TCGA-ER-A198-06 19 50464031 50464031 G T SIGLEC11 Missense_Mutation p.P80T 0.33 tolerated(1) benign(0.002) TCGA-ER-A198-06 19 50918994 50918994 G A POLD1 Missense_Mutation p.D911N 0.44 deleterious(0.01) probably_damaging(1) TCGA-ER-A198-06 19 51582855 51582855 C T KLK14 Missense_Mutation p.R122Q 0.38 tolerated(0.48) benign(0.015) TCGA-ER-A198-06 19 51890426 51890426 C T LIM2 Missense_Mutation p.R91Q 0.43 tolerated_low_confidence(0.38) benign(0.018) TCGA-ER-A198-06 19 51981864 51981864 G A CEACAM18 Missense_Mutation p.G51R 0.16 tolerated_low_confidence(0.41) benign(0) TCGA-ER-A198-06 19 53856226 53856226 G A ZNF845 Silent p.R766R 0.43 TCGA-ER-A198-06 19 54223389 54223389 G T MIR520D RNA 0.32 TCGA-ER-A198-06 19 54313760 54313760 C T NLRP12 Missense_Mutation p.G385S 0.36 tolerated(0.33) benign(0.01) TCGA-ER-A198-06 19 5456559 5456559 C G ZNRF4 Missense_Mutation p.Q353E 0.46 deleterious(0) probably_damaging(0.929) TCGA-ER-A198-06 19 5456594 5456594 C T ZNRF4 Silent p.S364S 0.46 TCGA-ER-A198-06 19 54567128 54567128 C T VSTM1 5'UTR 0.47 TCGA-ER-A198-06 19 54663878 54663878 G A TMC4 3'Flank 0.36 TCGA-ER-A198-06 19 57327202 57327202 C T PEG3 Missense_Mutation p.D870N 0.21 tolerated(0.63) benign(0.001) TCGA-ER-A198-06 19 57956849 57956849 C T ZNF749 Missense_Mutation p.P778L 0.22 deleterious(0) possibly_damaging(0.713) TCGA-ER-A198-06 19 6381742 6381742 C T GTF2F1 Missense_Mutation p.G268S 0.38 deleterious(0.01) possibly_damaging(0.865) TCGA-ER-A198-06 19 7975946 7975946 G A MAP2K7 Missense_Mutation p.E253K 0.44 tolerated(0.15) benign(0.15) TCGA-ER-A198-06 19 9058555 9058555 G A MUC16 Missense_Mutation p.P9631S 0.15 unknown(0) TCGA-ER-A198-06 19 9064386 9064386 G A MUC16 Missense_Mutation p.P7687L 0.30 unknown(0) TCGA-ER-A198-06 19 9801162 9801162 C T ZNF812 Silent p.G339G 0.58 TCGA-ER-A198-06 1 100195221 100195221 A G FRRS1 Silent p.P281P 0.31 TCGA-ER-A198-06 1 100964759 100964759 C T CDC14A Nonsense_Mutation p.R566* 0.29 TCGA-ER-A198-06 1 102269975 102269975 G A OLFM3 Missense_Mutation p.S399F 0.35 deleterious(0) possibly_damaging(0.776) TCGA-ER-A198-06 1 10394662 10394662 G A KIF1B Silent p.R957R 0.43 TCGA-ER-A198-06 1 117509688 117509688 C T PTGFRN Missense_Mutation p.P599S 0.32 deleterious(0.05) possibly_damaging(0.741) TCGA-ER-A198-06 1 13474892 13474892 G A PRAMEF18 Missense_Mutation p.P413S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A198-06 1 13716849 13716849 C T PRAMEF17 Silent p.F112F 0.42 TCGA-ER-A198-06 1 144814760 144814760 C T NBPF9 Missense_Mutation p.S132F 0.33 tolerated(0.05) probably_damaging(0.983) TCGA-ER-A198-06 1 152191011 152191011 C T HRNR Missense_Mutation p.G1032R 0.34 unknown(0) TCGA-ER-A198-06 1 152328507 152328507 C T FLG2 Silent p.S585S 0.33 TCGA-ER-A198-06 1 153907233 153907233 C T DENND4B Intron 0.50 TCGA-ER-A198-06 1 154461714 154461714 G A SHE Silent p.S279S 0.35 TCGA-ER-A198-06 1 154574656 154574656 C T ADAR Silent p.K154K 0.44 TCGA-ER-A198-06 1 154962690 154962690 C T FLAD1 Missense_Mutation p.P441S 0.35 tolerated(0.08) benign(0.257) TCGA-ER-A198-06 1 154962691 154962691 C T FLAD1 Missense_Mutation p.P441L 0.34 deleterious(0.02) possibly_damaging(0.466) TCGA-ER-A198-06 1 155630979 155630979 G A YY1AP1 Intron 0.41 TCGA-ER-A198-06 1 156909555 156909555 C T ARHGEF11 Missense_Mutation p.G1294E 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.908) TCGA-ER-A198-06 1 159033362 159033362 C T AIM2 Missense_Mutation p.G307R 0.37 deleterious(0) possibly_damaging(0.8) TCGA-ER-A198-06 1 159175964 159175964 C T DARC Silent p.I247I 0.29 TCGA-ER-A198-06 1 159277548 159277548 G A FCER1A Silent p.E200E 0.26 TCGA-ER-A198-06 1 160011519 160011519 G A KCNJ10 Silent p.L268L 0.36 TCGA-ER-A198-06 1 161165928 161165928 C T ADAMTS4 Intron 0.40 TCGA-ER-A198-06 1 161642806 161642806 G A FCGR2B Missense_Mutation p.G145R 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 1 161736198 161736198 C T ATF6 Silent p.S16S 0.26 TCGA-ER-A198-06 1 167097296 167097296 C T DUSP27 Silent p.S976S 0.22 TCGA-ER-A198-06 1 169511549 169511549 G A F5 Missense_Mutation p.P927S 0.31 tolerated_low_confidence(0.1) possibly_damaging(0.803) TCGA-ER-A198-06 1 169697314 169697314 G A SELE Silent p.F388F 0.36 TCGA-ER-A198-06 1 175054544 175054544 T G TNN Missense_Mutation p.L413R 0.57 deleterious(0.03) probably_damaging(1) TCGA-ER-A198-06 1 184764806 184764806 C T FAM129A Missense_Mutation p.E698K 0.39 tolerated(0.13) benign(0.033) TCGA-ER-A198-06 1 197032122 197032122 T - F13B Frame_Shift_Del p.S44Afs*6 0.32 TCGA-ER-A198-06 1 204418340 204418340 G A PIK3C2B Silent p.F773F 0.32 TCGA-ER-A198-06 1 204438346 204438346 G A PIK3C2B Silent p.V195V 0.44 TCGA-ER-A198-06 1 206653816 206653816 G A IKBKE Missense_Mutation p.R456Q 0.28 tolerated(0.37) benign(0.004) TCGA-ER-A198-06 1 207265145 207265145 C A C4BPB Missense_Mutation p.P130H 0.41 deleterious(0.04) benign(0.377) TCGA-ER-A198-06 1 209933708 209933708 G A TRAF3IP3 Silent p.R108R 0.63 TCGA-ER-A198-06 1 215844496 215844496 G A USH2A Missense_Mutation p.P4651S 0.29 benign(0.034) TCGA-ER-A198-06 1 222791496 222791496 G A MIA3 Missense_Mutation p.R15Q 0.57 tolerated_low_confidence(0.24) unknown(0) TCGA-ER-A198-06 1 228447368 228447368 T A OBSCN Silent p.A1676A 0.38 TCGA-ER-A198-06 1 228548176 228548176 G A OBSCN Intron 0.18 TCGA-ER-A198-06 1 228558444 228558444 G A OBSCN Missense_Mutation p.R7701Q 0.35 probably_damaging(0.975) TCGA-ER-A198-06 1 233489630 233489630 G A MLK4 Missense_Mutation p.G355E 0.31 deleterious(0) probably_damaging(0.992) TCGA-ER-A198-06 1 233802581 233802581 C T KCNK1 Missense_Mutation p.P199L 0.50 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 1 238050138 238050138 C T ZP4 Missense_Mutation p.E258K 0.22 deleterious(0.01) possibly_damaging(0.752) TCGA-ER-A198-06 1 240370231 240370231 G A FMN2 Missense_Mutation p.G707S 0.31 unknown(0) TCGA-ER-A198-06 1 248309099 248309099 C T OR2M5 Missense_Mutation p.S217F 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 1 248551479 248551479 G A OR2T6 Silent p.G190G 0.42 TCGA-ER-A198-06 1 248813734 248813734 C T OR2T27 Missense_Mutation p.G151E 0.26 tolerated(0.09) probably_damaging(0.992) TCGA-ER-A198-06 1 26888049 26888049 G A RPS6KA1 Silent p.G504G 0.40 TCGA-ER-A198-06 1 27224143 27224143 C T GPATCH3 Silent p.L175L 0.50 TCGA-ER-A198-06 1 28599271 28599271 C T SESN2 Silent p.S239S 0.34 TCGA-ER-A198-06 1 39785394 39785394 C T MACF1 Missense_Mutation p.S1340F 0.29 probably_damaging(0.939) TCGA-ER-A198-06 1 42880262 42880262 G A RIMKLA Missense_Mutation p.D265N 0.36 tolerated(0.32) benign(0.044) TCGA-ER-A198-06 1 43632897 43632897 C T EBNA1BP2 Missense_Mutation p.E238K 0.37 tolerated(0.06) possibly_damaging(0.493) TCGA-ER-A198-06 1 43675430 43675430 C T WDR65 Missense_Mutation p.S591L 0.32 deleterious(0.02) benign(0.147) TCGA-ER-A198-06 1 43913864 43913864 G A SZT2 Silent p.G3169G 0.26 TCGA-ER-A198-06 1 44071073 44071073 C T PTPRF Silent p.F1116F 0.32 TCGA-ER-A198-06 1 45270013 45270013 G A PLK3 Missense_Mutation p.E449K 0.27 tolerated(0.35) benign(0.08) TCGA-ER-A198-06 1 47051592 47051592 G A MKNK1 Intron 0.34 TCGA-ER-A198-06 1 47155265 47155265 C T EFCAB14 Silent p.L263L 0.32 TCGA-ER-A198-06 1 53153451 53153451 G A COA7 Nonsense_Mutation p.R213* 0.41 TCGA-ER-A198-06 1 5950972 5950972 C T NPHP4 Missense_Mutation p.G754R 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 1 75065536 75065536 C T C1orf173 Missense_Mutation p.M523I 0.30 deleterious(0.05) possibly_damaging(0.692) TCGA-ER-A198-06 1 7724386 7724386 G A CAMTA1 Silent p.K593K 0.37 TCGA-ER-A198-06 1 78383849 78383849 G A NEXN Missense_Mutation p.R113K 0.39 deleterious(0.01) benign(0.063) TCGA-ER-A198-06 1 82408831 82408831 C T LPHN2 Silent p.F192F 0.31 TCGA-ER-A198-06 1 98164978 98164978 A T DPYD Silent p.A203A 0.27 TCGA-ER-A198-06 20 34022117 34022117 C T GDF5 Missense_Mutation p.D366N 0.42 tolerated(0.17) benign(0.184) TCGA-ER-A198-06 20 41101144 41101144 G A PTPRT Silent p.T404T 0.23 TCGA-ER-A198-06 20 42331391 42331391 A G MYBL2 Missense_Mutation p.T405A 0.35 deleterious(0) possibly_damaging(0.744) TCGA-ER-A198-06 20 42331398 42331398 C T MYBL2 Missense_Mutation p.P407L 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 20 43052988 43052988 C T HNF4A Intron 0.37 TCGA-ER-A198-06 20 50310600 50310600 C T ATP9A Missense_Mutation p.D197N 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 20 52192399 52192399 G A ZNF217 Silent p.P968P 0.31 TCGA-ER-A198-06 20 56137861 56137861 C T PCK1 Silent p.I172I 0.44 TCGA-ER-A198-06 20 56735914 56735914 C T C20orf85 3'UTR 0.63 TCGA-ER-A198-06 20 57767778 57767778 G A ZNF831 Silent p.E568E 0.29 TCGA-ER-A198-06 20 6068451 6068451 C T FERMT1 Missense_Mutation p.M448I 0.25 tolerated(0.06) benign(0.236) TCGA-ER-A198-06 20 62038028 62038028 C T KCNQ2 Missense_Mutation p.G863D 0.25 deleterious_low_confidence(0.04) probably_damaging(0.928) TCGA-ER-A198-06 21 11039043 11039043 C T BAGE2 RNA 0.05 TCGA-ER-A198-06 21 17912223 17912223 C T MIRLET7C RNA 0.44 TCGA-ER-A198-06 21 19685262 19685262 C T TMPRSS15 Missense_Mutation p.G722E 0.29 deleterious(0.05) possibly_damaging(0.461) TCGA-ER-A198-06 21 37741392 37741392 G A MORC3 Missense_Mutation p.D576N 0.36 deleterious(0) probably_damaging(0.987) TCGA-ER-A198-06 21 37785272 37785272 G A CHAF1B Silent p.L384L 0.38 TCGA-ER-A198-06 21 40601257 40601257 C T BRWD1 Missense_Mutation p.D1036N 0.17 tolerated(0.18) probably_damaging(0.989) TCGA-ER-A198-06 21 40795010 40795010 C T LCA5L Silent p.Q243Q 0.30 TCGA-ER-A198-06 21 42613773 42613773 G A BACE2 Missense_Mutation p.D216N 0.40 tolerated(0.22) possibly_damaging(0.603) TCGA-ER-A198-06 22 20779757 20779757 G A SCARF2 Missense_Mutation p.P841S 0.24 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-ER-A198-06 22 21288222 21288222 C T CRKL Missense_Mutation p.P156L 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-ER-A198-06 22 27024321 27024321 G A CRYBA4 Missense_Mutation p.D124N 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A198-06 22 31345759 31345759 T A MORC2 Missense_Mutation p.Q37L 0.41 deleterious(0) benign(0.232) TCGA-ER-A198-06 22 38340481 38340481 C T C22orf23 Missense_Mutation p.M175I 0.34 deleterious(0) probably_damaging(0.996) TCGA-ER-A198-06 22 39219170 39219170 C T NPTXR Missense_Mutation p.G399E 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 22 40706833 40706833 C T TNRC6B Missense_Mutation p.A1424V 0.28 tolerated(0.07) benign(0.24) TCGA-ER-A198-06 22 44372662 44372662 C T SAMM50 Silent p.S270S 0.29 TCGA-ER-A198-06 22 50885272 50885272 G C SBF1 3'UTR 0.31 TCGA-ER-A198-06 22 50956401 50956401 G A NCAPH2 Splice_Site p.X141_splice 0.34 TCGA-ER-A198-06 22 51009841 51009841 G A CPT1B Missense_Mutation p.A568V 0.45 deleterious(0) probably_damaging(0.99) TCGA-ER-A198-06 2 107423361 107423361 C T ST6GAL2 Missense_Mutation p.E455K 0.33 probably_damaging(1) TCGA-ER-A198-06 2 109087109 109087109 G A GCC2 Missense_Mutation p.E442K 0.30 deleterious(0.04) probably_damaging(0.985) TCGA-ER-A198-06 2 112785979 112785979 C T MERTK Silent p.T846T 0.60 TCGA-ER-A198-06 2 113591100 113591100 C T IL1B Missense_Mutation p.R51Q 0.38 tolerated(1) benign(0.001) TCGA-ER-A198-06 2 119739818 119739818 C T MARCO Missense_Mutation p.P330S 0.44 tolerated(0.22) unknown(0) TCGA-ER-A198-06 2 120776753 120776753 A T EPB41L5 Silent p.T31T 0.61 TCGA-ER-A198-06 2 128471308 128471308 G A WDR33 Missense_Mutation p.P1053S 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.676) TCGA-ER-A198-06 2 135988271 135988271 G A ZRANB3 Missense_Mutation p.P589L 0.37 tolerated(0.31) benign(0.001) TCGA-ER-A198-06 2 137990576 137990576 G A THSD7B Missense_Mutation p.E675K 0.38 deleterious(0.02) possibly_damaging(0.486) TCGA-ER-A198-06 2 138208522 138208522 C T THSD7B Nonsense_Mutation p.R1023* 0.41 TCGA-ER-A198-06 2 141739771 141739771 C T LRP1B Missense_Mutation p.E949K 0.29 probably_damaging(0.949) TCGA-ER-A198-06 2 145157133 145157133 G A ZEB2 Nonsense_Mutation p.Q541* 0.29 TCGA-ER-A198-06 2 166032661 166032661 G A SCN3A Missense_Mutation p.P82S 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-ER-A198-06 2 167089885 167089885 G A SCN9A Missense_Mutation p.P1286S 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 2 167289231 167289231 G A SCN7A Missense_Mutation p.S730L 0.21 deleterious(0.01) benign(0.037) TCGA-ER-A198-06 2 168100167 168100167 A G XIRP2 Silent p.K755K 0.47 TCGA-ER-A198-06 2 168106586 168106586 A C XIRP2 Missense_Mutation p.E2895A 0.45 possibly_damaging(0.628) TCGA-ER-A198-06 2 179442202 179442202 C T TTN Missense_Mutation p.D22954N 0.38 TCGA-ER-A198-06 2 179590692 179590692 C T TTN Missense_Mutation p.G6786E 0.44 TCGA-ER-A198-06 2 179606520 179606520 C T TTN Missense_Mutation p.E3814K 0.33 TCGA-ER-A198-06 2 186672022 186672022 G A FSIP2 Missense_Mutation p.E6086K 0.31 probably_damaging(0.998) TCGA-ER-A198-06 2 196681481 196681481 G A DNAH7 Missense_Mutation p.S3211F 0.36 deleterious(0) benign(0.372) TCGA-ER-A198-06 2 196825299 196825299 G A DNAH7 Missense_Mutation p.A859V 0.40 deleterious(0.02) benign(0.094) TCGA-ER-A198-06 2 208440042 208440042 C T CREB1 Silent p.T198T 0.39 TCGA-ER-A198-06 2 210559632 210559632 C T MAP2 Missense_Mutation p.S913L 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A198-06 2 219878243 219878243 G A CCDC108 Silent p.L1282L 0.54 TCGA-ER-A198-06 2 220370189 220370189 C T GMPPA Silent p.L255L 0.27 TCGA-ER-A198-06 2 227963446 227963446 G A COL4A4 Missense_Mutation p.P390S 0.46 probably_damaging(0.96) TCGA-ER-A198-06 2 232573377 232573377 C T PTMA 5'UTR 0.43 TCGA-ER-A198-06 2 233680381 233680381 G A GIGYF2 Silent p.L735L 0.41 TCGA-ER-A198-06 2 234526745 234526745 G A UGT1A8 Missense_Mutation p.R131Q 0.33 tolerated(0.33) benign(0.001) TCGA-ER-A198-06 2 237489778 237489778 C T ACKR3 Missense_Mutation p.P224S 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 2 238449015 238449015 G A MLPH Missense_Mutation p.E377K 0.52 deleterious(0.01) benign(0.269) TCGA-ER-A198-06 2 240033241 240033241 G A HDAC4 Silent p.T648T 0.38 TCGA-ER-A198-06 2 240968962 240968962 C T OR6B2 Silent p.K295K 0.36 TCGA-ER-A198-06 2 242755725 242755725 G A NEU4 Missense_Mutation p.R28Q 0.38 tolerated(0.74) benign(0.043) TCGA-ER-A198-06 2 264866 264866 G A ACP1 5'Flank 0.39 TCGA-ER-A198-06 2 32738066 32738066 G A BIRC6 Silent p.R3471R 0.36 TCGA-ER-A198-06 2 42543128 42543128 G A EML4 Missense_Mutation p.R665K 0.30 tolerated(0.41) benign(0.003) TCGA-ER-A198-06 2 46378243 46378243 G A PRKCE Missense_Mutation p.E599K 0.38 deleterious(0.03) probably_damaging(1) TCGA-ER-A198-06 2 46611754 46611754 C T EPAS1 Silent p.L856L 0.42 TCGA-ER-A198-06 2 56149558 56149558 G A EFEMP1 Silent p.F6F 0.39 TCGA-ER-A198-06 2 69754441 69754441 C T AAK1 Silent p.L294L 0.40 TCGA-ER-A198-06 2 72802653 72802653 G A EXOC6B Silent p.L272L 0.32 TCGA-ER-A198-06 2 85770792 85770792 G A MAT2A Splice_Site p.X362_splice 0.33 TCGA-ER-A198-06 2 86831052 86831052 A C RNF103 Missense_Mutation p.C658G 0.46 deleterious(0.04) probably_damaging(0.996) TCGA-ER-A198-06 2 90229309 90229309 C T IGKV1D-42 Silent p.I43I 0.39 TCGA-ER-A198-06 2 95940436 95940436 C T PROM2 Missense_Mutation p.P35S 0.38 tolerated_low_confidence(0.22) benign(0.016) TCGA-ER-A198-06 2 96963187 96963187 G A SNRNP200 Missense_Mutation p.P431S 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-ER-A198-06 2 98914472 98914472 C T VWA3B Missense_Mutation p.A1087V 0.24 deleterious(0) probably_damaging(0.976) TCGA-ER-A198-06 3 100963420 100963420 G A IMPG2 Silent p.F585F 0.39 TCGA-ER-A198-06 3 107096810 107096810 A G CCDC54 Missense_Mutation p.I126V 0.37 tolerated(0.09) benign(0.039) TCGA-ER-A198-06 3 113145080 113145080 C T WDR52 Missense_Mutation p.E100K 0.47 tolerated(0.34) benign(0.001) TCGA-ER-A198-06 3 115738448 115738448 A C LSAMP Missense_Mutation p.V143G 0.54 deleterious(0) probably_damaging(0.992) TCGA-ER-A198-06 3 126137582 126137582 G A CCDC37 Silent p.R205R 0.44 TCGA-ER-A198-06 3 12953214 12953214 G A IQSEC1 Silent p.F791F 0.44 TCGA-ER-A198-06 3 134322982 134322982 G A KY Silent p.T475T 0.47 TCGA-ER-A198-06 3 15106679 15106679 G A MRPS25 Missense_Mutation p.P8L 0.33 deleterious(0) possibly_damaging(0.71) TCGA-ER-A198-06 3 194080633 194080633 G A LRRC15 Silent p.L386L 0.33 TCGA-ER-A198-06 3 194176669 194176669 C T ATP13A3 Missense_Mutation p.E195K 0.35 tolerated(0.13) possibly_damaging(0.542) TCGA-ER-A198-06 3 21792512 21792512 C T ZNF385D 5'UTR 0.35 TCGA-ER-A198-06 3 24006538 24006538 C T NR1D2 Missense_Mutation p.S406L 0.46 deleterious(0.02) benign(0.1) TCGA-ER-A198-06 3 24270472 24270472 C T THRB 5'UTR 0.42 TCGA-ER-A198-06 3 32932556 32932556 C T TRIM71 Silent p.I620I 0.43 TCGA-ER-A198-06 3 38743483 38743483 C T SCN10A Missense_Mutation p.E1502K 0.31 tolerated(0.68) benign(0.003) TCGA-ER-A198-06 3 39307928 39307928 C T CX3CR1 Missense_Mutation p.D57N 0.38 tolerated(0.37) benign(0.073) TCGA-ER-A198-06 3 42243935 42243935 G A TRAK1 Missense_Mutation p.E479K 0.34 tolerated(0.22) benign(0.202) TCGA-ER-A198-06 3 42956042 42956042 C T ZNF662 Silent p.V185V 0.38 TCGA-ER-A198-06 3 44926890 44926890 G A TGM4 Silent p.T31T 0.25 TCGA-ER-A198-06 3 52088047 52088047 G A DUSP7 Silent p.H287H 0.39 TCGA-ER-A198-06 3 57898318 57898318 G A SLMAP Missense_Mutation p.R603Q 0.42 tolerated_low_confidence(0.12) possibly_damaging(0.899) TCGA-ER-A198-06 3 58899555 58899555 G A C3orf67 Silent p.T18T 0.52 TCGA-ER-A198-06 3 65344738 65344738 C T MAGI1 Intron 0.35 TCGA-ER-A198-06 3 65415434 65415434 G A MAGI1 Missense_Mutation p.T643I 0.40 deleterious(0) probably_damaging(0.997) TCGA-ER-A198-06 3 9547696 9547696 G A LHFPL4 Missense_Mutation p.R200W 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 3 97367233 97367233 G A EPHA6 Intron 0.64 TCGA-ER-A198-06 3 9785336 9785336 C T BRPF1 Silent p.L796L 0.41 TCGA-ER-A198-06 4 104066293 104066293 C T CENPE Missense_Mutation p.E1591K 0.31 possibly_damaging(0.643) TCGA-ER-A198-06 4 111398146 111398146 C T ENPEP Silent p.F192F 0.45 TCGA-ER-A198-06 4 122085326 122085326 G A TNIP3 Intron 0.50 TCGA-ER-A198-06 4 126370114 126370114 C T FAT4 Missense_Mutation p.P2648L 0.29 probably_damaging(0.992) TCGA-ER-A198-06 4 126372057 126372057 C T FAT4 Missense_Mutation p.P3296S 0.32 probably_damaging(0.999) TCGA-ER-A198-06 4 142640556 142640556 G A IL15 5'UTR 0.38 TCGA-ER-A198-06 4 154631608 154631608 G A RNF175 Silent p.I300I 0.30 TCGA-ER-A198-06 4 155225908 155225908 C T DCHS2 Missense_Mutation p.E1385K 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 4 183714222 183714222 G A TENM3 Missense_Mutation p.D2133N 0.29 tolerated(0.19) possibly_damaging(0.811) TCGA-ER-A198-06 4 184210780 184210780 G A WWC2 Missense_Mutation p.E1126K 0.46 deleterious(0.02) possibly_damaging(0.697) TCGA-ER-A198-06 4 186097008 186097008 G A KIAA1430 Missense_Mutation p.P418S 0.28 tolerated(0.08) probably_damaging(1) TCGA-ER-A198-06 4 186545434 186545434 G A SORBS2 Silent p.I479I 0.43 TCGA-ER-A198-06 4 187086508 187086508 G A FAM149A Missense_Mutation p.V352M 0.34 tolerated(0.36) benign(0.007) TCGA-ER-A198-06 4 187086509 187086509 T A FAM149A Missense_Mutation p.V352E 0.35 tolerated(0.25) benign(0.084) TCGA-ER-A198-06 4 20619207 20619207 C T SLIT2 Missense_Mutation p.L1428F 0.38 tolerated(0.1) benign(0.006) TCGA-ER-A198-06 4 25803972 25803972 G A SEL1L3 Missense_Mutation p.S630L 0.53 deleterious(0) possibly_damaging(0.497) TCGA-ER-A198-06 4 48384831 48384831 G A SLAIN2 Missense_Mutation p.G370E 0.23 tolerated(0.27) possibly_damaging(0.73) TCGA-ER-A198-06 4 49009265 49009265 A C CWH43 Missense_Mutation p.K370Q 0.41 deleterious(0.05) benign(0.041) TCGA-ER-A198-06 4 5798917 5798917 C T EVC Silent p.S685S 0.30 TCGA-ER-A198-06 4 5961201 5961201 G A C4orf50 Silent p.L718L 0.23 TCGA-ER-A198-06 4 6055737 6055737 C T JAKMIP1 Intron 0.29 TCGA-ER-A198-06 4 85562137 85562137 G A CDS1 Silent p.L342L 0.45 TCGA-ER-A198-06 4 88584097 88584097 G A DMP1 Silent p.S389S 0.40 TCGA-ER-A198-06 4 96761282 96761282 T C PDHA2 5'UTR 0.50 TCGA-ER-A198-06 4 96761447 96761447 C T PDHA2 Missense_Mutation p.P49L 0.50 deleterious(0.03) possibly_damaging(0.508) TCGA-ER-A198-06 5 101593000 101593000 G A SLCO4C1 Missense_Mutation p.P430S 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A198-06 5 112174490 112174490 C T APC Nonsense_Mutation p.Q1067* 0.41 TCGA-ER-A198-06 5 11364995 11364995 G T CTNND2 Silent p.S395S 0.23 TCGA-ER-A198-06 5 118965419 118965419 G A FAM170A 5'UTR 0.40 TCGA-ER-A198-06 5 118970010 118970010 G A FAM170A Silent p.G189G 0.37 TCGA-ER-A198-06 5 118970427 118970427 G A FAM170A Silent p.R328R 0.39 TCGA-ER-A198-06 5 125801181 125801181 C T GRAMD3 Silent p.S64S 0.30 TCGA-ER-A198-06 5 125801182 125801182 C T GRAMD3 Missense_Mutation p.P65S 0.30 tolerated(0.34) benign(0.024) TCGA-ER-A198-06 5 125896802 125896802 C T ALDH7A1 Missense_Mutation p.E296K 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 5 126753435 126753435 C T MEGF10 Silent p.I412I 0.31 TCGA-ER-A198-06 5 130797421 130797421 G A RAPGEF6 Silent p.F947F 0.33 TCGA-ER-A198-06 5 132535090 132535090 G A FSTL4 Silent p.S742S 0.31 TCGA-ER-A198-06 5 134705283 134705283 C T H2AFY Missense_Mutation p.G97E 0.40 deleterious(0.01) probably_damaging(1) TCGA-ER-A198-06 5 134705284 134705284 C T H2AFY Missense_Mutation p.G97R 0.41 deleterious(0.04) probably_damaging(1) TCGA-ER-A198-06 5 135277332 135277332 G A FBXL21 RNA 0.41 TCGA-ER-A198-06 5 135692623 135692623 G A TRPC7 Silent p.F151F 0.38 TCGA-ER-A198-06 5 13727702 13727702 G A DNAH5 Missense_Mutation p.L3983F 0.31 possibly_damaging(0.849) TCGA-ER-A198-06 5 13762974 13762974 C T DNAH5 Missense_Mutation p.E3380K 0.35 possibly_damaging(0.621) TCGA-ER-A198-06 5 140167424 140167424 G A PCDHA1 Missense_Mutation p.V517M 0.28 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-ER-A198-06 5 140346978 140346978 G A PCDHAC2 Silent p.L209L 0.61 TCGA-ER-A198-06 5 140475666 140475666 C T PCDHB2 Missense_Mutation p.P431L 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A198-06 5 140517466 140517466 C T PCDHB5 3'UTR 0.27 TCGA-ER-A198-06 5 140767820 140767820 C T PCDHGB4 Silent p.I123I 0.27 TCGA-ER-A198-06 5 148753990 148753990 G A IL17B Missense_Mutation p.P162L 0.35 deleterious(0.05) possibly_damaging(0.811) TCGA-ER-A198-06 5 150853259 150853259 C T SLC36A1 Missense_Mutation p.P250L 0.33 deleterious(0) probably_damaging(0.987) TCGA-ER-A198-06 5 151202299 151202299 T C GLRA1 Missense_Mutation p.I437V 0.42 tolerated(0.21) benign(0.042) TCGA-ER-A198-06 5 153190820 153190820 C T GRIA1 3'UTR 0.50 TCGA-ER-A198-06 5 154181850 154181850 C T LARP1 Missense_Mutation p.S590L 0.28 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 5 167626914 167626914 C T TENM2 Missense_Mutation p.R1070C 0.32 tolerated(0.24) benign(0) TCGA-ER-A198-06 5 168093559 168093559 C T SLIT3 Missense_Mutation p.R1491H 0.34 deleterious(0) possibly_damaging(0.667) TCGA-ER-A198-06 5 170345765 170345765 C T RANBP17 Missense_Mutation p.R335C 0.43 deleterious(0) benign(0.38) TCGA-ER-A198-06 5 178556940 178556940 G A ADAMTS2 Missense_Mutation p.T817I 0.35 tolerated(0.55) benign(0.014) TCGA-ER-A198-06 5 24488226 24488226 C T CDH10 Missense_Mutation p.R638Q 0.33 tolerated(0.07) benign(0.209) TCGA-ER-A198-06 5 38403905 38403905 G A EGFLAM Intron 0.46 TCGA-ER-A198-06 5 40981531 40981531 G A C7 Silent p.E796E 0.50 TCGA-ER-A198-06 5 56152577 56152577 G A MAP3K1 Silent p.V211V 0.29 TCGA-ER-A198-06 5 56557063 56557063 C T GPBP1 Missense_Mutation p.P413L 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 5 56557064 56557064 C T GPBP1 Silent p.P413P 0.32 TCGA-ER-A198-06 5 66462170 66462170 A C MAST4 Missense_Mutation p.E2388A 0.35 benign(0.045) TCGA-ER-A198-06 5 79026206 79026206 C T CMYA5 Missense_Mutation p.P540S 0.33 possibly_damaging(0.857) TCGA-ER-A198-06 5 80681586 80681586 C G ACOT12 Missense_Mutation p.E63Q 0.42 tolerated(0.11) benign(0.33) TCGA-ER-A198-06 5 82816889 82816889 G A VCAN Missense_Mutation p.G922R 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-ER-A198-06 5 94865928 94865928 G A TTC37 Missense_Mutation p.L253F 0.38 tolerated(0.37) benign(0.002) TCGA-ER-A198-06 5 98206457 98206457 G A CHD1 Silent p.T1304T 0.37 TCGA-ER-A198-06 6 100395841 100395841 C T MCHR2 Silent p.R63R 0.21 TCGA-ER-A198-06 6 100895166 100895166 C T SIM1 Missense_Mutation p.V326I 0.34 tolerated(0.11) probably_damaging(0.999) TCGA-ER-A198-06 6 110714252 110714252 C T DDO Missense_Mutation p.S279N 0.29 tolerated(0.28) probably_damaging(0.925) TCGA-ER-A198-06 6 112476150 112476150 C T LAMA4 Splice_Site p.X654_splice 0.30 TCGA-ER-A198-06 6 116879226 116879226 T A FAM26D Missense_Mutation p.I123N 0.47 deleterious(0) probably_damaging(0.988) TCGA-ER-A198-06 6 133013556 133013556 C T VNN1 Missense_Mutation p.E332K 0.24 tolerated(0.52) benign(0.01) TCGA-ER-A198-06 6 136472385 136472385 G A PDE7B Missense_Mutation p.R157Q 0.36 tolerated(0.05) possibly_damaging(0.584) TCGA-ER-A198-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-ER-A198-06 6 139094904 139094904 C T CCDC28A Silent p.F31F 0.45 TCGA-ER-A198-06 6 143074207 143074207 G A HIVEP2 3'UTR 0.39 TCGA-ER-A198-06 6 153042964 153042964 G A MYCT1 Missense_Mutation p.R95Q 0.41 deleterious(0) possibly_damaging(0.776) TCGA-ER-A198-06 6 155451533 155451533 G A TIAM2 Silent p.R392R 0.31 TCGA-ER-A198-06 6 159457989 159457989 C T TAGAP Missense_Mutation p.E356K 0.34 tolerated(0.4) benign(0.01) TCGA-ER-A198-06 6 161071426 161071426 A G LPA Silent p.A51A 0.36 TCGA-ER-A198-06 6 161575237 161575237 G A AGPAT4 Missense_Mutation p.R152C 0.41 deleterious(0) probably_damaging(0.982) TCGA-ER-A198-06 6 24563733 24563733 A C KIAA0319 Missense_Mutation p.S815R 0.27 tolerated(0.47) possibly_damaging(0.756) TCGA-ER-A198-06 6 27925897 27925897 G A OR2B6 Silent p.R293R 0.33 TCGA-ER-A198-06 6 3154005 3154005 G A TUBB2A 3'UTR 0.59 TCGA-ER-A198-06 6 31727959 31727959 C T MSH5 Missense_Mutation p.P593L 0.39 deleterious(0) probably_damaging(0.998) TCGA-ER-A198-06 6 31848611 31848611 G A EHMT2 Silent p.Y1097Y 0.34 TCGA-ER-A198-06 6 32816878 32816878 C T TAP1 Silent p.L482L 0.39 TCGA-ER-A198-06 6 33177517 33177517 C T RING1 Missense_Mutation p.L65F 0.32 deleterious(0) probably_damaging(0.98) TCGA-ER-A198-06 6 33693340 33693340 C T IP6K3 Missense_Mutation p.D215N 0.44 deleterious(0) probably_damaging(0.981) TCGA-ER-A198-06 6 38863945 38863945 C T DNAH8 Missense_Mutation p.P2745S 0.30 benign(0.094) TCGA-ER-A198-06 6 41001672 41001672 G A UNC5CL Missense_Mutation p.P212S 0.38 tolerated(0.73) benign(0.005) TCGA-ER-A198-06 6 41160105 41160105 C T TREML2 3'UTR 0.50 TCGA-ER-A198-06 6 41162267 41162267 G A TREML2 Silent p.S227S 0.23 TCGA-ER-A198-06 6 43618155 43618155 G A RSPH9 Missense_Mutation p.E91K 0.34 tolerated(0.27) possibly_damaging(0.801) TCGA-ER-A198-06 6 46845956 46845956 C T GPR116 Missense_Mutation p.G408E 0.35 deleterious(0.03) possibly_damaging(0.887) TCGA-ER-A198-06 6 6152106 6152106 C T F13A1 Missense_Mutation p.R662Q 0.36 tolerated(0.35) benign(0) TCGA-ER-A198-06 6 6225023 6225023 G A F13A1 Missense_Mutation p.P290L 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 6 69772901 69772901 G A BAI3 Silent p.L803L 0.42 TCGA-ER-A198-06 6 69772902 69772902 G A BAI3 Missense_Mutation p.E804K 0.42 tolerated(0.06) probably_damaging(0.995) TCGA-ER-A198-06 6 7393483 7393483 G A RIOK1 Missense_Mutation p.G75R 0.46 tolerated(0.12) benign(0.024) TCGA-ER-A198-06 6 7727651 7727651 G A BMP6 Missense_Mutation p.G155R 0.29 tolerated(0.33) benign(0.062) TCGA-ER-A198-06 6 7886236 7886236 G A TXNDC5 Missense_Mutation p.T335I 0.40 tolerated(0.08) benign(0.285) TCGA-ER-A198-06 6 84799149 84799149 T G MRAP2 Missense_Mutation p.I189M 0.38 tolerated(0.05) benign(0.012) TCGA-ER-A198-06 6 90405698 90405698 G A MDN1 Nonsense_Mutation p.Q3133* 0.30 TCGA-ER-A198-06 6 90405699 90405699 G A MDN1 Silent p.S3132S 0.29 TCGA-ER-A198-06 7 104717435 104717435 C T KMT2E Missense_Mutation p.S265L 0.39 tolerated(0.44) benign(0.307) TCGA-ER-A198-06 7 120596271 120596271 C T ING3 Intron 0.18 TCGA-ER-A198-06 7 120935653 120935653 G A CPED1 Missense_Mutation p.V1010I 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A198-06 7 128486908 128486908 A C FLNC Missense_Mutation p.T1413P 0.30 tolerated(0.06) possibly_damaging(0.679) TCGA-ER-A198-06 7 128852240 128852240 C T SMO Missense_Mutation p.S771F 0.52 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A198-06 7 129825207 129825207 C T TMEM209 Missense_Mutation p.G259E 0.30 tolerated(0.1) benign(0.307) TCGA-ER-A198-06 7 130418365 130418365 A G KLF14 Missense_Mutation p.F166L 0.30 tolerated(0.74) benign(0) TCGA-ER-A198-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-ER-A198-06 7 14188692 14188692 C T DGKB 3'UTR 1.00 TCGA-ER-A198-06 7 142180968 142180968 G A TRBV6-5 5'UTR 0.28 TCGA-ER-A198-06 7 142459821 142459821 C T PRSS1 Missense_Mutation p.P133S 0.29 tolerated(0.13) benign(0.085) TCGA-ER-A198-06 7 142649655 142649655 G A KEL Nonsense_Mutation p.Q382* 0.17 TCGA-ER-A198-06 7 143016940 143016940 G A CLCN1 Silent p.K91K 0.24 TCGA-ER-A198-06 7 143772113 143772113 G A OR2A25 Silent p.K267K 0.53 TCGA-ER-A198-06 7 144061202 144061202 T A ARHGEF5 Missense_Mutation p.D480E 0.55 tolerated(0.17) benign(0) TCGA-ER-A198-06 7 146829347 146829347 G A CNTNAP2 Missense_Mutation p.S365N 0.21 deleterious(0.03) benign(0.077) TCGA-ER-A198-06 7 149172351 149172351 C T ZNF746 Silent p.R354R 0.18 TCGA-ER-A198-06 7 149500864 149500864 G A SSPO RNA 0.30 TCGA-ER-A198-06 7 157060510 157060510 C T UBE3C 3'UTR 0.57 TCGA-ER-A198-06 7 158443603 158443603 G A NCAPG2 Missense_Mutation p.T999I 0.49 tolerated(0.2) benign(0.013) TCGA-ER-A198-06 7 158443604 158443604 T A NCAPG2 Missense_Mutation p.T999S 0.49 tolerated(0.76) benign(0.001) TCGA-ER-A198-06 7 20371473 20371473 G A ITGB8 Missense_Mutation p.C15Y 0.45 deleterious_low_confidence(0.03) benign(0.122) TCGA-ER-A198-06 7 26236216 26236216 C T HNRNPA2B1 Missense_Mutation p.E192K 0.61 tolerated(0.06) unknown(0) TCGA-ER-A198-06 7 34867127 34867127 G T NPSR1 Missense_Mutation p.W198L 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 7 43503334 43503334 C T HECW1 Silent p.A909A 0.61 TCGA-ER-A198-06 7 43503335 43503335 C T HECW1 Missense_Mutation p.P910S 0.62 tolerated(0.15) benign(0.006) TCGA-ER-A198-06 7 70885994 70885994 G A WBSCR17 Missense_Mutation p.E289K 0.25 tolerated(0.4) probably_damaging(0.993) TCGA-ER-A198-06 7 71252847 71252847 C T CALN1 Silent p.K233K 0.27 TCGA-ER-A198-06 7 73933929 73933929 G A GTF2IRD1 Missense_Mutation p.A298T 0.23 tolerated(0.73) benign(0.002) TCGA-ER-A198-06 7 82579600 82579600 C T PCLO Missense_Mutation p.R3435Q 0.48 unknown(0) TCGA-ER-A198-06 7 82583262 82583262 G A PCLO Missense_Mutation p.S2336F 0.55 unknown(0) TCGA-ER-A198-06 7 82764940 82764940 C T PCLO Missense_Mutation p.M642I 0.31 unknown(0) TCGA-ER-A198-06 7 98535299 98535299 C T TRRAP Silent p.V1420V 0.37 TCGA-ER-A198-06 7 98547353 98547353 G T TRRAP Missense_Mutation p.R1668L 0.35 benign(0.032) TCGA-ER-A198-06 7 99055925 99055926 - G ATP5J2 3'UTR 0.25 TCGA-ER-A198-06 7 99668700 99668700 A G ZNF3 3'UTR 0.39 TCGA-ER-A198-06 8 100712097 100712097 C G VPS13B Missense_Mutation p.L2156V 0.19 tolerated(0.75) benign(0.364) TCGA-ER-A198-06 8 10469909 10469909 C T RP1L1 Missense_Mutation p.E567K 0.41 benign(0.042) TCGA-ER-A198-06 8 10557906 10557906 C T C8orf74 Silent p.T270T 0.44 TCGA-ER-A198-06 8 106810992 106810992 G A ZFPM2 Silent p.R260R 0.47 TCGA-ER-A198-06 8 113418828 113418828 C T CSMD3 Missense_Mutation p.G1912R 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 8 121219307 121219307 C T COL14A1 Missense_Mutation p.P389S 0.26 deleterious(0.02) probably_damaging(1) TCGA-ER-A198-06 8 121383403 121383403 A T COL14A1 Missense_Mutation p.D1775V 0.27 tolerated(0.52) benign(0.231) TCGA-ER-A198-06 8 124790913 124790913 G A FAM91A1 Silent p.R150R 0.23 TCGA-ER-A198-06 8 125076656 125076656 G C FER1L6 Missense_Mutation p.D1133H 0.23 tolerated(0.06) benign(0.255) TCGA-ER-A198-06 8 131861869 131861869 G A ADCY8 Silent p.F797F 0.27 TCGA-ER-A198-06 8 131964221 131964221 G A ADCY8 Silent p.L378L 0.21 TCGA-ER-A198-06 8 139189619 139189619 T G FAM135B Missense_Mutation p.K358N 0.22 deleterious(0) possibly_damaging(0.826) TCGA-ER-A198-06 8 139895407 139895407 G A COL22A1 Silent p.G3G 0.62 TCGA-ER-A198-06 8 142228193 142228193 G A SLC45A4 Missense_Mutation p.L465F 0.50 tolerated(0.3) probably_damaging(1) TCGA-ER-A198-06 8 144130709 144130709 C T C8orf31 3'UTR 0.27 TCGA-ER-A198-06 8 144944110 144944110 C T EPPK1 Silent p.R1104R 0.16 TCGA-ER-A198-06 8 17419559 17419559 C T SLC7A2 Silent p.F577F 0.31 TCGA-ER-A198-06 8 17486220 17486220 G A PDGFRL Missense_Mutation p.V244I 0.40 tolerated(0.06) benign(0.059) TCGA-ER-A198-06 8 27462838 27462838 C T CLU Silent p.L144L 0.26 TCGA-ER-A198-06 8 27668612 27668612 C T PBK Nonsense_Mutation p.W212* 0.29 TCGA-ER-A198-06 8 55541006 55541006 G A RP1 Missense_Mutation p.G1522S 0.23 tolerated(0.17) benign(0.026) TCGA-ER-A198-06 8 57079469 57079469 G A PLAG1 Missense_Mutation p.S279L 0.33 tolerated(0.15) benign(0.023) TCGA-ER-A198-06 8 63492212 63492212 T G NKAIN3 Missense_Mutation p.Y57D 0.40 deleterious(0) probably_damaging(0.974) TCGA-ER-A198-06 8 7343884 7343884 G A DEFB106B Silent p.L7L 0.10 TCGA-ER-A198-06 8 73848398 73848398 G A KCNB2 Missense_Mutation p.D270N 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A198-06 8 88365893 88365893 G A CNBD1 Silent p.G394G 0.35 TCGA-ER-A198-06 8 90937126 90937126 G A OSGIN2 Missense_Mutation p.G339E 0.43 tolerated(0.18) possibly_damaging(0.691) TCGA-ER-A198-06 8 9437707 9437707 A T TNKS Missense_Mutation p.M238L 0.44 tolerated(0.66) benign(0.033) TCGA-ER-A198-06 9 107298321 107298321 C T OR13C3 Missense_Mutation p.M258I 0.40 tolerated(1) benign(0.02) TCGA-ER-A198-06 9 107646745 107646745 C T ABCA1 Missense_Mutation p.E89K 0.35 deleterious(0.01) benign(0.099) TCGA-ER-A198-06 9 113734441 113734441 G A LPAR1 5'UTR 0.33 TCGA-ER-A198-06 9 113734442 113734442 G A LPAR1 5'UTR 0.33 TCGA-ER-A198-06 9 116812373 116812373 C T ZNF618 Silent p.L838L 0.32 TCGA-ER-A198-06 9 124522287 124522287 G A DAB2IP Missense_Mutation p.G219S 0.51 tolerated(1) benign(0.003) TCGA-ER-A198-06 9 132377787 132377787 G A C9orf50 Missense_Mutation p.R286C 0.32 deleterious(0.04) benign(0.356) TCGA-ER-A198-06 9 133759803 133759803 C T ABL1 Missense_Mutation p.S728F 0.35 deleterious_low_confidence(0) benign(0.309) TCGA-ER-A198-06 9 138387226 138387226 C T C9orf116 3'UTR 0.27 TCGA-ER-A198-06 9 139250282 139250282 C T GPSM1 Silent p.T532T 0.45 TCGA-ER-A198-06 9 139326424 139326424 G A INPP5E Silent p.T467T 0.37 TCGA-ER-A198-06 9 139840445 139840445 C T C8G Missense_Mutation p.L114F 0.50 deleterious(0.04) possibly_damaging(0.5) TCGA-ER-A198-06 9 140901302 140901302 C T CACNA1B Silent p.S686S 0.44 TCGA-ER-A198-06 9 17409438 17409438 G A CNTLN Silent p.Q921Q 0.32 TCGA-ER-A198-06 9 35390690 35390690 G A UNC13B Missense_Mutation p.D1014N 0.25 deleterious(0) possibly_damaging(0.902) TCGA-ER-A198-06 9 35675828 35675828 C T CA9 Silent p.P168P 0.40 TCGA-ER-A198-06 9 35826156 35826156 C T FAM221B Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.997) TCGA-ER-A198-06 9 6328839 6328839 G A TPD52L3 Missense_Mutation p.D82N 0.38 tolerated(0.06) benign(0.219) TCGA-ER-A198-06 9 78547381 78547381 C T PCSK5 Silent p.F93F 0.44 TCGA-ER-A198-06 9 79117502 79117502 G A GCNT1 Missense_Mutation p.E69K 0.44 tolerated(0.21) possibly_damaging(0.685) TCGA-ER-A198-06 9 79320713 79320713 T C PRUNE2 Silent p.E2159E 0.37 TCGA-ER-A198-06 9 95768333 95768333 C G FGD3 Missense_Mutation p.I236M 0.28 deleterious(0) probably_damaging(0.997) TCGA-ER-A198-06 X 130218305 130218305 G A ARHGAP36 Silent p.R224R 0.76 TCGA-ER-A198-06 X 130409651 130409651 G A IGSF1 Silent p.V1000V 0.74 TCGA-ER-A198-06 X 132670163 132670163 G A GPC3 Silent p.L601L 0.79 TCGA-ER-A198-06 X 136112705 136112705 G A GPR101 Missense_Mutation p.P377S 0.69 tolerated(0.1) benign(0.148) TCGA-ER-A198-06 X 1409325 1409325 A G CSF2RA Missense_Mutation p.N190S 0.38 tolerated(0.47) benign(0.336) TCGA-ER-A198-06 X 151870012 151870012 G A MAGEA6 Silent p.R234R 0.73 TCGA-ER-A198-06 X 151870013 151870013 G A MAGEA6 Missense_Mutation p.E235K 0.72 tolerated(0.79) probably_damaging(0.913) TCGA-ER-A198-06 X 152981107 152981107 C T BCAP31 Silent p.T144T 0.72 TCGA-ER-A198-06 X 153069993 153069993 G A PDZD4 Silent p.L375L 0.79 TCGA-ER-A198-06 X 155227399 155227399 C T IL9R 5'UTR 0.34 TCGA-ER-A198-06 X 3007669 3007669 G A ARSF Missense_Mutation p.M321I 0.72 tolerated(0.21) benign(0.271) TCGA-ER-A198-06 X 3261761 3261761 C T MXRA5 Silent p.E38E 0.62 TCGA-ER-A198-06 X 3261786 3261786 G A MXRA5 Missense_Mutation p.P30L 0.59 deleterious(0.03) probably_damaging(0.911) TCGA-ER-A198-06 X 34148220 34148220 C T FAM47A Missense_Mutation p.E726K 0.73 tolerated(0.14) probably_damaging(0.953) TCGA-ER-A198-06 X 40982969 40982969 C T USP9X Nonsense_Mutation p.Q30* 0.70 TCGA-ER-A198-06 X 51150133 51150133 A T CXorf67 Missense_Mutation p.I89L 0.79 tolerated(0.76) benign(0.001) TCGA-ER-A198-06 X 75649675 75649675 A C MAGEE1 Missense_Mutation p.K451T 0.58 deleterious(0.05) benign(0.01) TCGA-ER-A198-06 X 86890589 86890589 G A KLHL4 Missense_Mutation p.G580E 0.70 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 10 100017472 100017472 C T LOXL4 Missense_Mutation p.G399S 0.28 tolerated(0.09) benign(0.304) TCGA-ER-A199-06 10 104809545 104809545 C T CNNM2 Missense_Mutation p.T568I 0.09 deleterious(0) probably_damaging(0.924) TCGA-ER-A199-06 10 106937899 106937899 G A SORCS3 Silent p.L659L 0.28 TCGA-ER-A199-06 10 28409131 28409131 G A MPP7 Silent p.F293F 0.20 TCGA-ER-A199-06 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.27 deleterious(0) possibly_damaging(0.636) TCGA-ER-A199-06 10 415480 415482 CTT - DIP2C In_Frame_Del p.K695del 0.17 TCGA-ER-A199-06 10 47087209 47087209 C T NPY4R Silent p.L142L 0.12 TCGA-ER-A199-06 10 61835986 61835986 G A ANK3 Silent p.S1551S 0.27 TCGA-ER-A199-06 10 70405330 70405330 A T TET1 Silent p.G948G 0.23 TCGA-ER-A199-06 10 75090940 75090940 C T TTC18 Missense_Mutation p.E328K 0.21 tolerated(0.22) benign(0.053) TCGA-ER-A199-06 10 75101312 75101312 C T TTC18 Missense_Mutation p.G213R 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 10 75519806 75519806 G A SEC24C Missense_Mutation p.G171E 0.25 tolerated(0.34) possibly_damaging(0.642) TCGA-ER-A199-06 10 82369223 82369223 A T SH2D4B Missense_Mutation p.I301F 0.18 deleterious(0) probably_damaging(0.927) TCGA-ER-A199-06 10 96484139 96484139 G A CYP2C18 Missense_Mutation p.R333K 0.22 tolerated(0.06) benign(0.046) TCGA-ER-A199-06 10 97097017 97097017 G A SORBS1 Missense_Mutation p.P967L 0.17 deleterious(0.03) benign(0.002) TCGA-ER-A199-06 11 105769117 105769117 T A GRIA4 Missense_Mutation p.D283E 0.21 tolerated(0.22) benign(0.004) TCGA-ER-A199-06 11 119158644 119158644 C T CBL Missense_Mutation p.S675F 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.491) TCGA-ER-A199-06 11 124180174 124180174 C T OR8D1 Missense_Mutation p.M163I 0.21 tolerated(0.15) benign(0.389) TCGA-ER-A199-06 11 17491762 17491762 C T ABCC8 Missense_Mutation p.E100K 0.26 tolerated(0.72) benign(0.015) TCGA-ER-A199-06 11 56309817 56309817 C T OR5M11 Silent p.%3D 0.10 TCGA-ER-A199-06 11 58605793 58605793 C T GLYATL2 Missense_Mutation p.E43K 0.15 tolerated(0.35) possibly_damaging(0.732) TCGA-ER-A199-06 11 65649973 65649973 G A CTSW Missense_Mutation p.D172N 0.17 tolerated(0.21) benign(0.001) TCGA-ER-A199-06 11 89424095 89424095 G A FOLH1B RNA 0.20 TCGA-ER-A199-06 11 902963 902963 G A CHID1 Missense_Mutation p.P112L 0.18 deleterious(0) probably_damaging(0.998) TCGA-ER-A199-06 12 103248959 103248959 C T PAH Missense_Mutation p.E221K 0.17 deleterious(0.04) benign(0.383) TCGA-ER-A199-06 12 111066730 111066730 C T TCTN1 Intron 0.25 TCGA-ER-A199-06 12 11183905 11183905 G A TAS2R31 Silent p.S10S 0.17 TCGA-ER-A199-06 12 112499158 112499158 G A NAA25 Missense_Mutation p.S395L 0.20 tolerated(0.17) benign(0.051) TCGA-ER-A199-06 12 113553569 113553569 A G RASAL1 Silent p.L292L 0.27 TCGA-ER-A199-06 12 118293378 118293378 G A KSR2 Silent p.I109I 0.26 TCGA-ER-A199-06 12 124323032 124323032 G A DNAH10 Silent p.V1526V 0.21 TCGA-ER-A199-06 12 126128629 126128629 A G TMEM132B Missense_Mutation p.N477S 0.24 deleterious(0.04) benign(0.006) TCGA-ER-A199-06 12 126138637 126138637 C T TMEM132B Missense_Mutation p.P873L 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 12 126138638 126138638 C A TMEM132B Silent p.P873P 0.29 TCGA-ER-A199-06 12 22796809 22796809 G A ETNK1 Missense_Mutation p.R179Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 12 33003895 33003895 G A PKP2 Missense_Mutation p.R395C 0.30 deleterious(0.03) possibly_damaging(0.893) TCGA-ER-A199-06 12 48739160 48739160 A C ZNF641 Missense_Mutation p.M139R 0.23 deleterious(0) benign(0.099) TCGA-ER-A199-06 12 54922055 54922055 G A NCKAP1L Silent p.Q800Q 0.31 TCGA-ER-A199-06 12 56215836 56215836 C T DNAJC14 Silent p.K678K 0.20 TCGA-ER-A199-06 12 6702357 6702357 G A CHD4 Missense_Mutation p.S851F 0.10 deleterious(0) probably_damaging(0.951) TCGA-ER-A199-06 12 7343061 7343061 C T PEX5 Missense_Mutation p.L30F 0.12 tolerated(0.07) benign(0.007) TCGA-ER-A199-06 12 7510023 7510023 G A CD163L1 Missense_Mutation p.P1447S 0.12 tolerated(0.38) benign(0.201) TCGA-ER-A199-06 12 7550931 7550931 C T CD163L1 Nonsense_Mutation p.W553* 0.12 TCGA-ER-A199-06 12 7945552 7945552 C T NANOG Missense_Mutation p.P53L 0.09 deleterious(0) possibly_damaging(0.796) TCGA-ER-A199-06 13 110436510 110436510 C T IRS2 Missense_Mutation p.D631N 0.14 deleterious(0.03) probably_damaging(0.94) TCGA-ER-A199-06 13 20763697 20763697 C T GJB2 Silent p.T8T 0.18 TCGA-ER-A199-06 13 31715323 31715323 G A HSPH1 Missense_Mutation p.P597L 0.20 deleterious(0.02) probably_damaging(1) TCGA-ER-A199-06 13 32366091 32366091 G A RXFP2 Missense_Mutation p.G432R 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 13 36223797 36223797 C T NBEA Silent p.F2571F 0.17 TCGA-ER-A199-06 13 37569629 37569629 G A ALG5 Silent p.P57P 0.19 TCGA-ER-A199-06 13 39343824 39343824 G A FREM2 Silent p.R1840R 0.22 TCGA-ER-A199-06 14 20586336 20586336 G A OR4K17 Silent p.K257K 0.24 TCGA-ER-A199-06 14 24112393 24112400 GCTGCTGA - DHRS2 Frame_Shift_Del p.L152Pfs*23 0.17 TCGA-ER-A199-06 14 24839583 24839583 C T NFATC4 Missense_Mutation p.P390S 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 14 25101557 25101557 G C GZMB Missense_Mutation p.N104K 0.22 tolerated(0.65) benign(0.006) TCGA-ER-A199-06 14 71575607 71575607 C T PCNX Silent p.S2196S 0.24 TCGA-ER-A199-06 14 73783103 73783103 C T NUMB Missense_Mutation p.G77R 0.13 tolerated(0.1) possibly_damaging(0.661) TCGA-ER-A199-06 15 25432747 25432747 G A SNORD115-10 RNA 0.28 TCGA-ER-A199-06 15 33961554 33961554 G A RYR3 Splice_Site p.X1874_splice 0.21 TCGA-ER-A199-06 15 65682535 65682535 G A IGDCC4 Missense_Mutation p.P789L 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 15 74481525 74481525 C T STRA6 Missense_Mutation p.G380R 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-ER-A199-06 16 14969247 14969247 A T NOMO1 Missense_Mutation p.Y775F 0.14 tolerated(0.18) possibly_damaging(0.741) TCGA-ER-A199-06 16 19485449 19485449 C T TMC5 Silent p.F647F 0.19 TCGA-ER-A199-06 16 20548474 20548474 C T ACSM2B 3'UTR 0.26 TCGA-ER-A199-06 16 20999122 20999122 C T DNAH3 Missense_Mutation p.V2259M 0.08 tolerated(0.86) benign(0.091) TCGA-ER-A199-06 16 2235168 2235168 C T CASKIN1 Missense_Mutation p.A395T 0.35 benign(0.04) TCGA-ER-A199-06 16 33020774 33020774 G A IGHV3OR16-8 Missense_Mutation p.G61E 0.14 tolerated_low_confidence(0.1) possibly_damaging(0.841) TCGA-ER-A199-06 16 55866998 55866998 G A CES1 5'UTR 0.29 TCGA-ER-A199-06 16 67910468 67910468 C G EDC4 Missense_Mutation p.S106C 0.09 deleterious(0) probably_damaging(0.991) TCGA-ER-A199-06 16 68405331 68405331 C T SMPD3 Missense_Mutation p.G252S 0.15 tolerated(0.24) benign(0.025) TCGA-ER-A199-06 16 830384 830384 G A MSLNL Missense_Mutation p.P206L 0.16 probably_damaging(0.958) TCGA-ER-A199-06 16 84513500 84513500 G A TLDC1 3'UTR 0.22 TCGA-ER-A199-06 16 87364906 87364906 G A FBXO31 Silent p.S536S 0.22 TCGA-ER-A199-06 17 10447086 10447086 G A MYH2 Missense_Mutation p.P228L 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 17 33977562 33977562 C T AP2B1 Missense_Mutation p.P517L 0.22 deleterious(0) possibly_damaging(0.797) TCGA-ER-A199-06 17 36482779 36482779 C T GPR179 Missense_Mutation p.E2225K 0.14 deleterious(0.02) benign(0.172) TCGA-ER-A199-06 17 36482780 36482780 C T GPR179 Nonsense_Mutation p.W2224* 0.14 TCGA-ER-A199-06 17 38926324 38926324 C T KRT26 Missense_Mutation p.M244I 0.24 tolerated(0.12) benign(0.005) TCGA-ER-A199-06 17 39156052 39156052 G A KRTAP3-2 Silent p.T18T 0.25 TCGA-ER-A199-06 17 39921203 39921203 G A JUP Silent p.P342P 0.24 TCGA-ER-A199-06 17 40327750 40327750 G A KCNH4 Silent p.I278I 0.08 TCGA-ER-A199-06 17 45891179 45891179 G A OSBPL7 Missense_Mutation p.P458L 0.30 tolerated(0.21) benign(0) TCGA-ER-A199-06 17 45915274 45915274 G A SCRN2 Missense_Mutation p.P405L 0.18 tolerated(0.14) benign(0.002) TCGA-ER-A199-06 17 48617661 48617661 C T EPN3 Silent p.S315S 0.14 TCGA-ER-A199-06 17 56573397 56573397 G A MTMR4 Silent p.Y702Y 0.11 TCGA-ER-A199-06 17 56581150 56581150 G A MTMR4 Missense_Mutation p.S589F 0.23 deleterious(0.01) possibly_damaging(0.62) TCGA-ER-A199-06 17 57046945 57046945 G A PPM1E Missense_Mutation p.G277R 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 17 57046946 57046946 G A PPM1E Missense_Mutation p.G277E 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 17 60351423 60351423 G A TBC1D3P2 RNA 0.12 TCGA-ER-A199-06 17 66040459 66040459 A C KPNA2 Missense_Mutation p.E396A 0.25 deleterious(0) possibly_damaging(0.762) TCGA-ER-A199-06 17 74163764 74163764 C T RNF157 Silent p.Q137Q 0.08 TCGA-ER-A199-06 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.35 TCGA-ER-A199-06 18 23873455 23873455 C T TAF4B Nonsense_Mutation p.Q598* 0.16 TCGA-ER-A199-06 18 29102104 29102104 G A DSG2 Silent p.S194S 0.17 TCGA-ER-A199-06 18 44656625 44656625 G A HDHD2 Nonsense_Mutation p.Q129* 0.17 TCGA-ER-A199-06 19 11474874 11474874 G A DKFZP761J1410 Missense_Mutation p.R309Q 0.11 tolerated(0.13) benign(0.104) TCGA-ER-A199-06 19 11474875 11474875 G A DKFZP761J1410 Silent p.R309R 0.11 TCGA-ER-A199-06 19 18333100 18333100 C T PDE4C Silent p.R92R 0.16 TCGA-ER-A199-06 19 18555554 18555554 G A ELL 3'UTR 0.28 TCGA-ER-A199-06 19 2213670 2213670 G A DOT1L Intron 0.29 TCGA-ER-A199-06 19 36017757 36017757 G A SBSN Missense_Mutation p.A476V 0.43 tolerated(1) possibly_damaging(0.873) TCGA-ER-A199-06 19 36330278 36330278 G A NPHS1 Silent p.V990V 0.25 TCGA-ER-A199-06 19 38673292 38673292 A T SIPA1L3 Nonsense_Mutation p.K1448* 0.15 TCGA-ER-A199-06 19 43268068 43268068 G A PSG8 Silent p.L144L 0.15 TCGA-ER-A199-06 19 44932791 44932791 C T ZNF229 Missense_Mutation p.R722K 0.21 tolerated(0.9) benign(0.008) TCGA-ER-A199-06 19 45406309 45406309 C T TOMM40 Silent p.I323I 0.22 TCGA-ER-A199-06 19 46997520 46997520 G A PNMAL2 Silent p.V401V 0.21 TCGA-ER-A199-06 19 50902643 50902643 C T POLD1 Missense_Mutation p.S73L 0.21 deleterious(0.03) benign(0.003) TCGA-ER-A199-06 19 51532506 51532506 G A KLK12 Intron 0.23 TCGA-ER-A199-06 19 52090840 52090840 A T ZNF175 Missense_Mutation p.Y419F 0.17 tolerated(0.3) probably_damaging(0.997) TCGA-ER-A199-06 19 52327094 52327094 A G FPR3 Silent p.L31L 0.16 TCGA-ER-A199-06 19 53086410 53086410 T A ZNF701 Missense_Mutation p.D432E 0.12 tolerated(0.39) benign(0.121) TCGA-ER-A199-06 19 54197692 54197692 G A MIR526B RNA 0.19 TCGA-ER-A199-06 19 5705925 5705925 G A LONP1 Silent p.L409L 0.16 TCGA-ER-A199-06 19 57646858 57646858 C T ZIM3 Missense_Mutation p.E283K 0.19 tolerated(0.2) benign(0.009) TCGA-ER-A199-06 19 6702496 6702496 C T C3 Silent p.E780E 0.18 TCGA-ER-A199-06 19 9018453 9018453 C T MUC16 Missense_Mutation p.R12574K 0.18 possibly_damaging(0.567) TCGA-ER-A199-06 19 9578257 9578257 C T ZNF560 Missense_Mutation p.G456R 0.16 tolerated(0.08) probably_damaging(0.953) TCGA-ER-A199-06 1 103471395 103471395 C T COL11A1 Missense_Mutation p.R615K 0.22 unknown(0) TCGA-ER-A199-06 1 112309444 112309444 C T DDX20 Nonsense_Mutation p.Q800* 0.22 TCGA-ER-A199-06 1 113124629 113124629 G A ST7L Silent p.L352L 0.15 TCGA-ER-A199-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.25 tolerated(0.06) benign(0.006) TCGA-ER-A199-06 1 120458690 120458690 G A NOTCH2 Missense_Mutation p.P2219S 0.21 tolerated(0.14) probably_damaging(0.998) TCGA-ER-A199-06 1 12343435 12343435 C T VPS13D Missense_Mutation p.P1759L 0.12 benign(0.075) TCGA-ER-A199-06 1 145561799 145561799 G A ANKRD35 Missense_Mutation p.R496K 0.23 deleterious(0.02) benign(0.067) TCGA-ER-A199-06 1 145704307 145704307 C T CD160 Missense_Mutation p.G37E 0.11 tolerated(0.11) benign(0.275) TCGA-ER-A199-06 1 150238977 150238977 A G APH1A Missense_Mutation p.I230T 0.14 tolerated(0.32) benign(0.085) TCGA-ER-A199-06 1 150444375 150444375 C T RPRD2 Missense_Mutation p.P984L 0.18 deleterious_low_confidence(0) benign(0.202) TCGA-ER-A199-06 1 152383215 152383215 C T CRNN Missense_Mutation p.E115K 0.16 tolerated(0.19) benign(0.011) TCGA-ER-A199-06 1 153741373 153741373 C T INTS3 Missense_Mutation p.P750L 0.12 deleterious(0) benign(0.294) TCGA-ER-A199-06 1 154919184 154919184 G A PBXIP1 Silent p.A322A 0.17 TCGA-ER-A199-06 1 155228653 155228653 G A SCAMP3 Nonsense_Mutation p.Q161* 0.13 TCGA-ER-A199-06 1 155736235 155736235 G A GON4L Missense_Mutation p.P1010L 0.18 deleterious(0.05) probably_damaging(0.994) TCGA-ER-A199-06 1 156236056 156236056 G A SMG5 Silent p.S457S 0.21 TCGA-ER-A199-06 1 156437893 156437893 G A MEF2D Silent p.D482D 0.28 TCGA-ER-A199-06 1 15772132 15772132 G A CTRC Missense_Mutation p.G227D 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-ER-A199-06 1 15789236 15789236 G A CELA2A Missense_Mutation p.R79K 0.22 tolerated(0.21) benign(0.001) TCGA-ER-A199-06 1 158224917 158224917 C T CD1A Silent p.S34S 0.12 TCGA-ER-A199-06 1 168012370 168012370 G A DCAF6 Missense_Mutation p.S612N 0.22 tolerated_low_confidence(0.19) benign(0.001) TCGA-ER-A199-06 1 169388387 169388387 C T CCDC181 Missense_Mutation p.R360Q 0.22 tolerated(0.15) benign(0.182) TCGA-ER-A199-06 1 173567119 173567119 G A SLC9C2 Missense_Mutation p.S94F 0.10 deleterious(0.03) possibly_damaging(0.876) TCGA-ER-A199-06 1 175335040 175335040 C T TNR Missense_Mutation p.S763N 0.21 deleterious(0) probably_damaging(0.96) TCGA-ER-A199-06 1 184777223 184777223 C T FAM129A Silent p.Q440Q 0.18 TCGA-ER-A199-06 1 203186132 203186132 G A CHIT1 Missense_Mutation p.P429L 0.14 tolerated(0.06) possibly_damaging(0.744) TCGA-ER-A199-06 1 205554035 205554035 G A MFSD4 Silent p.R297R 0.22 TCGA-ER-A199-06 1 20915567 20915567 C T CDA 5'UTR 0.15 TCGA-ER-A199-06 1 213146268 213146268 G A VASH2 Missense_Mutation p.E238K 0.20 deleterious(0.01) possibly_damaging(0.858) TCGA-ER-A199-06 1 214171436 214171436 G A PROX1 Missense_Mutation p.D520N 0.11 deleterious(0.04) benign(0.055) TCGA-ER-A199-06 1 216465538 216465538 C T USH2A Missense_Mutation p.D607N 0.16 benign(0.014) TCGA-ER-A199-06 1 228444355 228444355 C T OBSCN Missense_Mutation p.P1530L 0.10 possibly_damaging(0.857) TCGA-ER-A199-06 1 228452073 228452073 C T OBSCN Silent p.S1798S 0.22 TCGA-ER-A199-06 1 230390970 230390970 C T GALNT2 Missense_Mutation p.S339L 0.18 deleterious(0) probably_damaging(0.975) TCGA-ER-A199-06 1 235577778 235577778 G A TBCE Silent p.P72P 0.10 TCGA-ER-A199-06 1 237919588 237919588 G A RYR2 Missense_Mutation p.E3716K 0.10 probably_damaging(0.911) TCGA-ER-A199-06 1 24426240 24426240 G T MYOM3 Missense_Mutation p.P196T 0.24 tolerated(0.26) possibly_damaging(0.45) TCGA-ER-A199-06 1 247588534 247588534 A C NLRP3 Missense_Mutation p.S597R 0.31 tolerated(0.14) possibly_damaging(0.864) TCGA-ER-A199-06 1 247654770 247654770 T C OR2W5 RNA 0.13 TCGA-ER-A199-06 1 26872468 26872468 G A RPS6KA1 Missense_Mutation p.R26K 0.33 tolerated_low_confidence(0.96) benign(0) TCGA-ER-A199-06 1 26885410 26885410 C T RPS6KA1 Silent p.P408P 0.31 TCGA-ER-A199-06 1 32264052 32264052 G A SPOCD1 Silent p.P673P 0.30 TCGA-ER-A199-06 1 32265660 32265660 G A SPOCD1 Missense_Mutation p.S562F 0.15 deleterious(0.01) possibly_damaging(0.497) TCGA-ER-A199-06 1 36921790 36921790 G A MRPS15 Missense_Mutation p.R212W 0.13 deleterious(0.05) benign(0.037) TCGA-ER-A199-06 1 47278227 47278227 C A CYP4B1 Missense_Mutation p.P143T 0.14 deleterious(0) possibly_damaging(0.736) TCGA-ER-A199-06 1 53420478 53420478 T A SCP2 Splice_Site p.X132_splice 0.13 TCGA-ER-A199-06 1 6635361 6635361 A G TAS1R1 Missense_Mutation p.Y390C 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 1 74507089 74507089 G A LRRIQ3 Missense_Mutation p.S509F 0.08 deleterious(0) benign(0.062) TCGA-ER-A199-06 1 89480263 89480263 C T GBP3 Missense_Mutation p.G132E 0.24 deleterious(0) probably_damaging(0.998) TCGA-ER-A199-06 20 30132785 30132785 C T HM13 Missense_Mutation p.P134L 0.13 tolerated(0.14) benign(0.015) TCGA-ER-A199-06 20 30407947 30407947 C T MYLK2 Missense_Mutation p.P24L 0.19 tolerated_low_confidence(0.1) benign(0.001) TCGA-ER-A199-06 20 31585462 31585462 C T SUN5 Silent p.S124S 0.12 TCGA-ER-A199-06 20 36662325 36662325 C T RPRD1B 5'UTR 0.25 TCGA-ER-A199-06 20 37581057 37581057 G A FAM83D Missense_Mutation p.R581K 0.21 deleterious(0.04) benign(0.056) TCGA-ER-A199-06 20 37581058 37581058 G A FAM83D Silent p.R581R 0.21 TCGA-ER-A199-06 20 44238797 44238797 G A WFDC9 Silent p.L8L 0.12 TCGA-ER-A199-06 20 47611060 47611060 G A ARFGEF2 Missense_Mutation p.G1016R 0.19 tolerated(0.16) benign(0.155) TCGA-ER-A199-06 20 50407356 50407356 C T SALL4 Missense_Mutation p.E556K 0.16 deleterious(0) probably_damaging(0.99) TCGA-ER-A199-06 20 50407813 50407813 G A SALL4 Silent p.S403S 0.19 TCGA-ER-A199-06 20 56138106 56138106 C T PCK1 Silent p.P211P 0.15 TCGA-ER-A199-06 20 57829475 57829475 G A ZNF831 Missense_Mutation p.A1571T 0.15 tolerated(0.32) benign(0.021) TCGA-ER-A199-06 20 8770195 8770195 C T PLCB1 Silent p.I1103I 0.17 TCGA-ER-A199-06 21 10942744 10942744 C T TPTE Missense_Mutation p.D233N 0.07 deleterious(0.02) possibly_damaging(0.582) TCGA-ER-A199-06 21 10998311 10998311 C T TPTE RNA 0.13 TCGA-ER-A199-06 21 32410639 32410639 C T KRTAP19-8 Missense_Mutation p.G42R 0.14 tolerated_low_confidence(0.86) unknown(0) TCGA-ER-A199-06 22 18301315 18301315 G A MICAL3 Missense_Mutation p.S1371F 0.08 benign(0.235) TCGA-ER-A199-06 22 20131078 20131078 C T ZDHHC8 Missense_Mutation p.S642L 0.44 deleterious(0) probably_damaging(0.996) TCGA-ER-A199-06 22 24035163 24035163 G A RGL4 Silent p.L227L 0.32 TCGA-ER-A199-06 22 26100117 26100117 C T ADRBK2 Silent p.S423S 0.20 TCGA-ER-A199-06 22 29694811 29694811 C T EWSR1 Silent p.P507P 0.12 TCGA-ER-A199-06 22 29837577 29837577 T A RFPL1 Silent p.I140I 0.24 TCGA-ER-A199-06 22 30891916 30891916 C T SEC14L4 Missense_Mutation p.R58K 0.18 tolerated(1) benign(0.001) TCGA-ER-A199-06 22 36698617 36698617 G A MYH9 Silent p.T832T 0.22 TCGA-ER-A199-06 22 40161538 40161538 G A ENTHD1 Silent p.I303I 0.16 TCGA-ER-A199-06 22 50580616 50580616 G T MOV10L1 Missense_Mutation p.W726L 0.33 tolerated(0.84) benign(0) TCGA-ER-A199-06 2 101652558 101652558 G A TBC1D8 Missense_Mutation p.R494C 0.14 deleterious(0.03) probably_damaging(1) TCGA-ER-A199-06 2 102959872 102959872 C T IL1RL1 Missense_Mutation p.P323S 0.14 tolerated(0.15) benign(0.057) TCGA-ER-A199-06 2 119748183 119748183 G A MARCO Missense_Mutation p.G361E 0.25 deleterious(0) unknown(0) TCGA-ER-A199-06 2 132558553 132558553 G A C2orf27B 5'UTR 0.23 TCGA-ER-A199-06 2 135908014 135908014 G A RAB3GAP1 Missense_Mutation p.G667R 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 2 152512945 152512945 C T NEB Missense_Mutation p.G2073R 0.12 probably_damaging(1) TCGA-ER-A199-06 2 160798661 160798661 G A PLA2R1 Missense_Mutation p.T1385I 0.17 tolerated(0.21) benign(0.001) TCGA-ER-A199-06 2 165994598 165994598 G A SCN3A Missense_Mutation p.P728S 0.29 deleterious(0.04) possibly_damaging(0.55) TCGA-ER-A199-06 2 166245390 166245390 G A SCN2A Missense_Mutation p.D1692N 0.14 tolerated(0.13) benign(0.027) TCGA-ER-A199-06 2 173451010 173451010 G A PDK1 Missense_Mutation p.S317N 0.08 deleterious(0) probably_damaging(0.926) TCGA-ER-A199-06 2 173659880 173659880 G A RAPGEF4 Missense_Mutation p.E65K 0.15 tolerated(0.3) probably_damaging(0.998) TCGA-ER-A199-06 2 179433796 179433796 T C TTN Missense_Mutation p.Q25688R 0.16 TCGA-ER-A199-06 2 179433797 179433797 G T TTN Missense_Mutation p.Q25688K 0.15 TCGA-ER-A199-06 2 179434480 179434480 C T TTN Missense_Mutation p.G25460E 0.17 TCGA-ER-A199-06 2 179441825 179441825 C T TTN Silent p.K23079K 0.17 TCGA-ER-A199-06 2 179606096 179606096 G A TTN Missense_Mutation p.A3955V 0.21 TCGA-ER-A199-06 2 179616237 179616237 C T TTN Intron 0.19 TCGA-ER-A199-06 2 185803196 185803196 G A ZNF804A Missense_Mutation p.A1025T 0.10 tolerated(0.11) probably_damaging(0.977) TCGA-ER-A199-06 2 202082538 202082538 G A CASP10 3'UTR 0.15 TCGA-ER-A199-06 2 220350076 220350076 G A SPEG Missense_Mutation p.E2540K 0.12 benign(0.383) TCGA-ER-A199-06 2 228750084 228750084 G A DAW1 Missense_Mutation p.E20K 0.13 tolerated(0.4) benign(0.039) TCGA-ER-A199-06 2 230231745 230231745 G A DNER Missense_Mutation p.A649V 0.27 deleterious(0) possibly_damaging(0.798) TCGA-ER-A199-06 2 239976470 239976470 G A HDAC4 Silent p.S1016S 0.16 TCGA-ER-A199-06 2 29256361 29256361 C T FAM179A Silent p.P719P 0.24 TCGA-ER-A199-06 2 31010176 31010176 C T CAPN13 Missense_Mutation p.E6K 0.27 tolerated(0.12) benign(0.026) TCGA-ER-A199-06 2 54483115 54483115 C T TSPYL6 Silent p.G58G 0.08 TCGA-ER-A199-06 2 99725886 99725886 G A TSGA10 Missense_Mutation p.S6F 0.21 tolerated(0.22) possibly_damaging(0.683) TCGA-ER-A199-06 3 10191497 10191497 C T VHL Nonsense_Mutation p.Q164* 0.09 TCGA-ER-A199-06 3 10865066 10865066 G A SLC6A11 Missense_Mutation p.M204I 0.27 tolerated(1) benign(0.007) TCGA-ER-A199-06 3 109049332 109049332 C T DPPA4 Intron 0.09 TCGA-ER-A199-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.24 deleterious(0) benign(0.02) TCGA-ER-A199-06 3 123419849 123419849 C T MYLK Silent p.G822G 0.16 TCGA-ER-A199-06 3 123452564 123452564 C T MYLK Missense_Mutation p.E427K 0.19 deleterious(0) benign(0.156) TCGA-ER-A199-06 3 148858186 148858186 G A HPS3 Missense_Mutation p.E205K 0.20 deleterious(0) probably_damaging(0.953) TCGA-ER-A199-06 3 157818099 157818099 A G SHOX2 Missense_Mutation p.V210A 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A199-06 3 164750437 164750437 C T SI Missense_Mutation p.G870E 0.14 tolerated(0.12) possibly_damaging(0.504) TCGA-ER-A199-06 3 168833264 168833264 C T MECOM Missense_Mutation p.G676E 0.26 tolerated(1) benign(0.001) TCGA-ER-A199-06 3 169664277 169664277 G A RP11-379K17.4 RNA 0.22 TCGA-ER-A199-06 3 186839028 186839028 G A RPL39L Missense_Mutation p.R21C 0.09 tolerated(0.23) benign(0.002) TCGA-ER-A199-06 3 193081925 193081925 C T ATP13A5 Missense_Mutation p.E70K 0.26 deleterious(0) probably_damaging(0.984) TCGA-ER-A199-06 3 194162180 194162180 G A ATP13A3 Missense_Mutation p.P524S 0.16 tolerated(0.56) benign(0.038) TCGA-ER-A199-06 3 431047 431047 G A CHL1 Missense_Mutation p.R787Q 0.32 tolerated(0.14) possibly_damaging(0.796) TCGA-ER-A199-06 3 4722316 4722316 C T ITPR1 Missense_Mutation p.S1001F 0.19 deleterious(0.02) benign(0.026) TCGA-ER-A199-06 3 78667013 78667013 C T ROBO1 Missense_Mutation p.E1352K 0.19 deleterious(0) probably_damaging(0.952) TCGA-ER-A199-06 3 89176412 89176412 C T EPHA3 Missense_Mutation p.P48S 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A199-06 3 97868537 97868537 C T OR5H14 Missense_Mutation p.S103L 0.21 tolerated(0.12) benign(0.014) TCGA-ER-A199-06 3 97983179 97983179 G A OR5H6 Missense_Mutation p.M17I 0.12 deleterious(0.01) benign(0.103) TCGA-ER-A199-06 4 108870574 108870574 C T CYP2U1 Missense_Mutation p.P453S 0.08 deleterious(0.05) probably_damaging(0.971) TCGA-ER-A199-06 4 119948129 119948129 C G SYNPO2 Missense_Mutation p.S202C 0.19 deleterious(0) probably_damaging(0.997) TCGA-ER-A199-06 4 119948130 119948130 C T SYNPO2 Silent p.S202S 0.19 TCGA-ER-A199-06 4 144466732 144466732 A C SMARCA5 Missense_Mutation p.Y798S 0.09 deleterious(0) possibly_damaging(0.737) TCGA-ER-A199-06 4 155157594 155157594 G A DCHS2 Missense_Mutation p.T2282I 0.18 tolerated(0.18) possibly_damaging(0.511) TCGA-ER-A199-06 4 155241981 155241981 G A DCHS2 Missense_Mutation p.P1069S 0.21 deleterious(0.04) possibly_damaging(0.888) TCGA-ER-A199-06 4 158254097 158254097 C T GRIA2 Missense_Mutation p.P337S 0.16 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 4 166986935 166986935 C T TLL1 Missense_Mutation p.S703F 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A199-06 4 186545539 186545539 G A SORBS2 Silent p.V444V 0.23 TCGA-ER-A199-06 4 23833376 23833376 T A PPARGC1A Splice_Site p.X79_splice 0.12 TCGA-ER-A199-06 4 25673274 25673274 C T SLC34A2 Missense_Mutation p.L327F 0.07 tolerated(0.11) benign(0.02) TCGA-ER-A199-06 4 26638852 26638852 T A TBC1D19 Missense_Mutation p.I105N 0.25 deleterious(0) possibly_damaging(0.713) TCGA-ER-A199-06 4 40440415 40440415 C T RBM47 Missense_Mutation p.E166K 0.25 deleterious(0.05) benign(0.353) TCGA-ER-A199-06 4 55153703 55153703 C T PDGFRA Missense_Mutation p.S890F 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 4 57384993 57384993 C T ARL9 Missense_Mutation p.P56S 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 4 73942768 73942768 G A ANKRD17 Silent p.I2547I 0.33 TCGA-ER-A199-06 4 84216470 84216470 C T HPSE 3'UTR 0.26 TCGA-ER-A199-06 5 107197446 107197446 G A FBXL17 Missense_Mutation p.P694L 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.746) TCGA-ER-A199-06 5 131303644 131303644 C T ACSL6 Missense_Mutation p.G529R 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 5 131329887 131329887 C T ACSL6 Missense_Mutation p.R36Q 0.19 deleterious_low_confidence(0.02) benign(0.069) TCGA-ER-A199-06 5 13700980 13700980 C T DNAH5 Missense_Mutation p.E4498K 0.11 possibly_damaging(0.621) TCGA-ER-A199-06 5 137502286 137502286 T C BRD8 Silent p.Q306Q 0.22 TCGA-ER-A199-06 5 13824439 13824439 G A DNAH5 Missense_Mutation p.H2150Y 0.11 benign(0.415) TCGA-ER-A199-06 5 140515911 140515911 G A PCDHB5 Missense_Mutation p.E299K 0.21 deleterious_low_confidence(0.01) benign(0.113) TCGA-ER-A199-06 5 140531943 140531943 C T PCDHB6 Missense_Mutation p.S702L 0.21 deleterious_low_confidence(0) benign(0.209) TCGA-ER-A199-06 5 140731426 140731426 G A PCDHGB1 Silent p.Q533Q 0.19 TCGA-ER-A199-06 5 140794192 140794192 G A PCDHGA10 Missense_Mutation p.D484N 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A199-06 5 149495355 149495355 G A PDGFRB Missense_Mutation p.R1098W 0.26 deleterious_low_confidence(0.03) benign(0.427) TCGA-ER-A199-06 5 153190641 153190641 C T GRIA1 Silent p.L869L 0.13 TCGA-ER-A199-06 5 153190642 153190642 C T GRIA1 Missense_Mutation p.P870S 0.12 tolerated_low_confidence(0.63) benign(0.141) TCGA-ER-A199-06 5 160758016 160758016 G A GABRB2 Silent p.F317F 0.09 TCGA-ER-A199-06 5 31305281 31305281 C T CDH6 Missense_Mutation p.L334F 0.25 deleterious(0.02) benign(0.001) TCGA-ER-A199-06 5 35876446 35876446 G A IL7R Missense_Mutation p.S413N 0.23 tolerated(0.21) benign(0.014) TCGA-ER-A199-06 5 40947853 40947853 C T C7 Silent p.I296I 0.22 TCGA-ER-A199-06 5 41155163 41155163 G A C6 Missense_Mutation p.S671L 0.19 tolerated(0.63) benign(0.006) TCGA-ER-A199-06 5 5146391 5146391 C T ADAMTS16 Silent p.F108F 0.22 TCGA-ER-A199-06 5 70892176 70892176 A G MCCC2 Missense_Mutation p.N89S 0.20 tolerated_low_confidence(0.63) benign(0.002) TCGA-ER-A199-06 5 75490905 75490905 C T SV2C Missense_Mutation p.R248C 0.10 deleterious(0) probably_damaging(0.995) TCGA-ER-A199-06 5 82815321 82815321 G A VCAN Missense_Mutation p.G399E 0.06 tolerated(0.12) benign(0.263) TCGA-ER-A199-06 5 82948397 82948397 C T HAPLN1 Missense_Mutation p.G116E 0.08 tolerated(0.63) benign(0.01) TCGA-ER-A199-06 6 112440433 112440433 C T LAMA4 Missense_Mutation p.E1583K 0.22 tolerated(0.91) benign(0.001) TCGA-ER-A199-06 6 119525949 119525949 G A MAN1A1 Missense_Mutation p.S364L 0.16 deleterious(0) possibly_damaging(0.71) TCGA-ER-A199-06 6 15513580 15513580 C T JARID2 Missense_Mutation p.P1126L 0.27 deleterious(0.02) benign(0.276) TCGA-ER-A199-06 6 158509711 158509711 G A SYNJ2 Silent p.K1121K 0.27 TCGA-ER-A199-06 6 160329009 160329009 C T MAS1 3'UTR 0.23 TCGA-ER-A199-06 6 16327065 16327065 G A ATXN1 Missense_Mutation p.P493S 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 6 167585680 167585680 C T TCP10L2 Silent p.H16H 0.36 TCGA-ER-A199-06 6 30459126 30459126 G A HLA-E Missense_Mutation p.E275K 0.13 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ER-A199-06 6 31596995 31596995 C T PRRC2A Missense_Mutation p.P614S 0.22 possibly_damaging(0.641) TCGA-ER-A199-06 6 32037589 32037589 G A TNXB Silent p.P1776P 0.17 TCGA-ER-A199-06 6 32183118 32183118 G T NOTCH4 Missense_Mutation p.P636T 0.15 tolerated(0.06) benign(0.24) TCGA-ER-A199-06 6 348139 348139 C T DUSP22 Silent p.I100I 0.11 TCGA-ER-A199-06 6 37336896 37336896 C T RNF8 Nonsense_Mutation p.Q293* 0.20 TCGA-ER-A199-06 6 37622290 37622290 C T MDGA1 Missense_Mutation p.E248K 0.20 tolerated(0.12) probably_damaging(0.995) TCGA-ER-A199-06 6 38891880 38891880 G A DNAH8 Missense_Mutation p.R3418Q 0.18 benign(0.012) TCGA-ER-A199-06 6 49815925 49815925 G A CRISP1 Missense_Mutation p.P95S 0.15 tolerated(0.73) benign(0.013) TCGA-ER-A199-06 6 54805208 54805208 G A FAM83B Missense_Mutation p.R480Q 0.27 deleterious(0.03) possibly_damaging(0.55) TCGA-ER-A199-06 6 63990239 63990239 T G LGSN Missense_Mutation p.E406A 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A199-06 6 75953460 75953460 T C COX7A2 Silent p.V29V 0.19 TCGA-ER-A199-06 6 76728558 76728558 G A IMPG1 Silent p.F228F 0.33 TCGA-ER-A199-06 7 100334225 100334225 G C ZAN Missense_Mutation p.G76R 0.41 probably_damaging(0.977) TCGA-ER-A199-06 7 101847737 101847737 A T CUX1 Missense_Mutation p.T1003S 0.22 tolerated(0.06) unknown(0) TCGA-ER-A199-06 7 104753026 104753027 - T KMT2E Frame_Shift_Ins p.L1610Ffs*259 0.18 TCGA-ER-A199-06 7 107558469 107558469 C T DLD Missense_Mutation p.S446L 0.16 deleterious(0.01) benign(0.044) TCGA-ER-A199-06 7 107708494 107708494 C T LAMB4 Missense_Mutation p.G805R 0.19 deleterious(0) probably_damaging(0.999) TCGA-ER-A199-06 7 111409609 111409609 G A DOCK4 Silent p.I1259I 0.20 TCGA-ER-A199-06 7 128480100 128480100 G C FLNC Missense_Mutation p.A479P 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A199-06 7 134215553 134215553 C T AKR1B10 Silent p.I75I 0.14 TCGA-ER-A199-06 7 138555961 138555961 G A KIAA1549 Missense_Mutation p.P1498L 0.25 deleterious(0.02) probably_damaging(1) TCGA-ER-A199-06 7 150174235 150174235 G T GIMAP8 Silent p.G455G 0.13 TCGA-ER-A199-06 7 150217899 150217899 G A GIMAP7 Silent p.R279R 0.25 TCGA-ER-A199-06 7 151945102 151945102 G A KMT2C Missense_Mutation p.S806F 0.03 possibly_damaging(0.498) TCGA-ER-A199-06 7 20766713 20766713 G A ABCB5 Silent p.R892R 0.20 TCGA-ER-A199-06 7 21826306 21826306 C T DNAH11 Missense_Mutation p.A3228V 0.13 probably_damaging(0.997) TCGA-ER-A199-06 7 22769227 22769227 C G IL6 Missense_Mutation p.A140G 0.20 deleterious(0.01) possibly_damaging(0.867) TCGA-ER-A199-06 7 38389251 38389251 G A TRGV5 Missense_Mutation p.S20F 0.10 deleterious(0.05) possibly_damaging(0.687) TCGA-ER-A199-06 7 44151192 44151192 C T AEBP1 Silent p.A601A 0.11 TCGA-ER-A199-06 7 47874752 47874752 G A PKD1L1 Silent p.S2011S 0.14 TCGA-ER-A199-06 7 47913507 47913507 C T PKD1L1 Missense_Mutation p.G1296S 0.17 tolerated(0.51) benign(0.005) TCGA-ER-A199-06 7 48427419 48427419 G A ABCA13 Missense_Mutation p.G3779E 0.27 probably_damaging(1) TCGA-ER-A199-06 7 57522875 57522875 G A ZNF716 Splice_Site p.X88_splice 0.18 TCGA-ER-A199-06 7 6441629 6441629 C T RAC1 Missense_Mutation p.P159L 0.17 tolerated(0.14) benign(0.045) TCGA-ER-A199-06 7 6777288 6777288 A C PMS2CL RNA 0.14 TCGA-ER-A199-06 7 72193812 72193812 C G TYW1B 3'Flank 0.19 TCGA-ER-A199-06 7 82997096 82997096 C T SEMA3E Missense_Mutation p.E712K 0.18 deleterious(0.02) possibly_damaging(0.856) TCGA-ER-A199-06 7 87173569 87173569 G A ABCB1 Missense_Mutation p.S696F 0.13 deleterious(0) possibly_damaging(0.723) TCGA-ER-A199-06 8 102589725 102589725 G A GRHL2 Silent p.A327A 0.17 TCGA-ER-A199-06 8 110412386 110412386 C T PKHD1L1 Missense_Mutation p.T365M 0.14 tolerated(0.09) possibly_damaging(0.73) TCGA-ER-A199-06 8 110477438 110477438 G A PKHD1L1 Missense_Mutation p.E2793K 0.15 deleterious(0) probably_damaging(0.982) TCGA-ER-A199-06 8 110576814 110576814 G T EBAG9 3'UTR 0.08 TCGA-ER-A199-06 8 11995072 11995072 C T USP17L2 Missense_Mutation p.D400N 0.17 tolerated(0.58) benign(0.004) TCGA-ER-A199-06 8 130765061 130765061 C T GSDMC Missense_Mutation p.E243K 0.08 tolerated(0.89) benign(0) TCGA-ER-A199-06 8 17198974 17198974 G A MTMR7 Silent p.S210S 0.23 TCGA-ER-A199-06 8 43159852 43159852 T A RNU6-104P 3'Flank 0.29 TCGA-ER-A199-06 8 57354406 57354406 G A PENK Missense_Mutation p.P77S 0.14 tolerated(0.76) benign(0.005) TCGA-ER-A199-06 8 63659649 63659649 C T NKAIN3 Silent p.Y144Y 0.12 TCGA-ER-A199-06 8 64098864 64098864 C T YTHDF3 Missense_Mutation p.H98Y 0.21 tolerated(0.05) probably_damaging(0.972) TCGA-ER-A199-06 8 70539458 70539458 C T SULF1 Missense_Mutation p.P622S 0.18 tolerated(0.59) benign(0.042) TCGA-ER-A199-06 8 77767066 77767066 C T ZFHX4 Missense_Mutation p.H2637Y 0.19 probably_damaging(0.946) TCGA-ER-A199-06 8 77767767 77767767 C T ZFHX4 Silent p.S2870S 0.18 TCGA-ER-A199-06 9 107367138 107367138 G A OR13C2 Silent p.F257F 0.10 TCGA-ER-A199-06 9 112172648 112172648 G A PTPN3 Missense_Mutation p.S454L 0.09 tolerated(0.08) benign(0.013) TCGA-ER-A199-06 9 113704021 113704021 C T LPAR1 Missense_Mutation p.R158Q 0.12 tolerated(0.32) benign(0.007) TCGA-ER-A199-06 9 114090033 114090033 G A OR2K2 Silent p.I227I 0.22 TCGA-ER-A199-06 9 117086343 117086343 G A ORM1 Silent p.R101R 0.14 TCGA-ER-A199-06 9 130492962 130492962 G A TTC16 Missense_Mutation p.E634K 0.12 deleterious(0.03) benign(0.293) TCGA-ER-A199-06 9 136385350 136385350 G A TMEM8C Silent p.L66L 0.09 TCGA-ER-A199-06 9 26905462 26905462 G A PLAA 3'UTR 0.23 TCGA-ER-A199-06 9 80144101 80144101 C T GNA14 Missense_Mutation p.D65N 0.11 deleterious(0.03) benign(0.052) TCGA-ER-A199-06 9 86920249 86920249 C T SLC28A3 Missense_Mutation p.R85K 0.12 tolerated(0.68) benign(0.004) TCGA-ER-A199-06 X 102864583 102864583 C T TCEAL3 Silent p.I197I 0.09 TCGA-ER-A199-06 X 103495484 103495484 C T ESX1 Missense_Mutation p.D216N 0.12 tolerated(0.31) benign(0.066) TCGA-ER-A199-06 X 106788996 106788996 G A FRMPD3 Silent p.A142A 0.20 TCGA-ER-A199-06 X 107939566 107939566 G A COL4A5 Silent p.R1678R 0.08 TCGA-ER-A199-06 X 117712602 117712602 C T DOCK11 Missense_Mutation p.P502S 0.21 tolerated(1) benign(0.113) TCGA-ER-A199-06 X 119389023 119389023 C T ZBTB33 Missense_Mutation p.R585C 0.14 deleterious(0) possibly_damaging(0.863) TCGA-ER-A199-06 X 123699396 123699396 C T TENM1 Missense_Mutation p.E698K 0.20 deleterious(0.01) benign(0.027) TCGA-ER-A199-06 X 130410995 130410995 A C IGSF1 Silent p.G847G 0.13 TCGA-ER-A199-06 X 134987465 134987465 G A SAGE1 Missense_Mutation p.R123Q 0.13 tolerated(0.88) benign(0.015) TCGA-ER-A199-06 X 135618168 135618168 C T VGLL1 5'UTR 0.10 TCGA-ER-A199-06 X 138810969 138810969 G A ATP11C 3'UTR 0.38 TCGA-ER-A199-06 X 151935697 151935697 G A MAGEA3 Missense_Mutation p.S157F 0.10 tolerated(0.52) benign(0.011) TCGA-ER-A199-06 X 152713137 152713137 G A HAUS7 3'UTR 0.38 TCGA-ER-A199-06 X 17040294 17040294 G A REPS2 Missense_Mutation p.R149Q 0.16 deleterious(0) probably_damaging(0.954) TCGA-ER-A199-06 X 24625972 24625972 C T PCYT1B Missense_Mutation p.R75K 0.27 deleterious(0.02) benign(0.202) TCGA-ER-A199-06 X 30254885 30254885 G A MAGEB3 Missense_Mutation p.E282K 0.08 deleterious(0) probably_damaging(0.967) TCGA-ER-A199-06 X 3030371 3030371 C T ARSF Missense_Mutation p.S516F 0.10 deleterious(0) probably_damaging(0.942) TCGA-ER-A199-06 X 44922683 44922683 T C KDM6A Missense_Mutation p.V515A 0.16 tolerated(0.54) benign(0.001) TCGA-ER-A199-06 X 48463396 48463396 C T WDR13 Silent p.I478I 0.16 TCGA-ER-A199-06 X 50053595 50053595 G A CCNB3 Missense_Mutation p.S809N 0.17 tolerated(0.14) possibly_damaging(0.727) TCGA-ER-A199-06 X 51488447 51488447 C T GSPT2 Silent p.F575F 0.17 TCGA-ER-A199-06 X 52825576 52825576 C T SPANXN5 Silent p.R57R 0.10 TCGA-ER-A199-06 X 69489979 69489979 T A ARR3 Missense_Mutation p.L44I 0.12 tolerated(0.19) benign(0.059) TCGA-ER-A199-06 X 70328136 70328136 C T IL2RG Silent p.G305G 0.09 TCGA-ER-A199-06 X 70836525 70836525 A C CXCR3 Missense_Mutation p.L313R 0.10 deleterious(0) probably_damaging(0.979) TCGA-ER-A19A-06 10 104120832 104120832 C T GBF1 Silent p.F481F 0.06 TCGA-ER-A19A-06 10 124380767 124380767 G A DMBT1 Missense_Mutation p.G1698S 0.04 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 10 127760074 127760074 C T ADAM12 Missense_Mutation p.G435E 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 10 129224221 129224221 C T DOCK1 Silent p.A1599A 0.04 TCGA-ER-A19A-06 10 5435999 5435999 G A TUBAL3 Silent p.F274F 0.05 TCGA-ER-A19A-06 10 61815462 61815462 C T ANK3 Missense_Mutation p.R4340K 0.04 possibly_damaging(0.867) TCGA-ER-A19A-06 10 71835480 71835480 C T H2AFY2 Silent p.I22I 0.10 TCGA-ER-A19A-06 10 75289450 75289450 G A USP54 Missense_Mutation p.S683L 0.07 tolerated(0.19) benign(0.001) TCGA-ER-A19A-06 11 17485033 17485033 G A ABCC8 Silent p.I177I 0.03 TCGA-ER-A19A-06 11 18745706 18745706 C T IGSF22 Silent p.Q26Q 0.05 TCGA-ER-A19A-06 11 4615434 4615434 G A OR52I1 Missense_Mutation p.D56N 0.04 deleterious(0.02) benign(0.309) TCGA-ER-A19A-06 11 4843090 4843090 G A OR51F2 Missense_Mutation p.G159R 0.06 deleterious(0.01) probably_damaging(1) TCGA-ER-A19A-06 11 56143558 56143558 C T OR8U1 Silent p.F153F 0.05 TCGA-ER-A19A-06 11 6190586 6190586 C T OR52B2 Silent p.%3D 0.07 TCGA-ER-A19A-06 12 121431342 121431342 G A HNF1A Silent p.Q182Q 0.04 TCGA-ER-A19A-06 12 123186720 123186720 C T HCAR2 3'UTR 0.05 TCGA-ER-A19A-06 12 13716761 13716761 G A GRIN2B Silent p.F1137F 0.14 TCGA-ER-A19A-06 12 45105149 45105149 G A NELL2 Missense_Mutation p.S422L 0.09 tolerated(0.29) benign(0.002) TCGA-ER-A19A-06 12 47173410 47173410 A T SLC38A4 Missense_Mutation p.V234E 0.06 deleterious(0) possibly_damaging(0.892) TCGA-ER-A19A-06 12 53070226 53070226 G A KRT1 Silent p.A436A 0.07 TCGA-ER-A19A-06 12 54936426 54936426 G A NCKAP1L Missense_Mutation p.R1114Q 0.07 deleterious(0) probably_damaging(0.988) TCGA-ER-A19A-06 12 6707587 6707587 G A CHD4 Missense_Mutation p.P496L 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-ER-A19A-06 12 99060130 99060130 C T APAF1 Missense_Mutation p.L453F 0.08 deleterious(0.05) benign(0.089) TCGA-ER-A19A-06 13 113770093 113770093 G A F7 Missense_Mutation p.G184R 0.09 deleterious(0.02) benign(0.081) TCGA-ER-A19A-06 13 61987027 61987027 C T PCDH20 Missense_Mutation p.G402E 0.06 deleterious(0.02) probably_damaging(1) TCGA-ER-A19A-06 14 106321285 106321285 A C IGHM Missense_Mutation p.F235C 0.04 deleterious(0) probably_damaging(0.995) TCGA-ER-A19A-06 14 22205027 22205027 G A TRAV4 Missense_Mutation p.E31K 0.07 deleterious(0) probably_damaging(0.986) TCGA-ER-A19A-06 14 22251601 22251601 C T TRAV7 Missense_Mutation p.S73L 0.09 tolerated(0.08) benign(0.271) TCGA-ER-A19A-06 14 23282619 23282619 G A SLC7A7 5'UTR 0.07 TCGA-ER-A19A-06 14 38724435 38724435 C T CLEC14A Missense_Mutation p.D265N 0.07 tolerated(0.15) benign(0.216) TCGA-ER-A19A-06 14 55236885 55236885 C T SAMD4A Missense_Mutation p.R554W 0.06 deleterious(0.03) probably_damaging(0.975) TCGA-ER-A19A-06 14 63174717 63174717 C T KCNH5 Missense_Mutation p.E826K 0.08 tolerated_low_confidence(0.15) benign(0.126) TCGA-ER-A19A-06 14 69792741 69792741 G A GALNT16 Missense_Mutation p.E189K 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A19A-06 14 70712585 70712585 C T ADAM21P1 RNA 0.08 TCGA-ER-A19A-06 14 72976951 72976951 G A RGS6 Missense_Mutation p.R352Q 0.05 tolerated(0.11) benign(0.026) TCGA-ER-A19A-06 14 76948948 76948948 G A ESRRB Silent p.K211K 0.11 TCGA-ER-A19A-06 14 95584028 95584028 A G DICER1 Silent p.T480T 0.10 TCGA-ER-A19A-06 15 24924106 24924106 C T NPAP1 Missense_Mutation p.S1031F 0.10 tolerated_low_confidence(0.19) benign(0.362) TCGA-ER-A19A-06 15 34356204 34356204 G A CHRM5 Missense_Mutation p.R429Q 0.10 deleterious(0.02) probably_damaging(1) TCGA-ER-A19A-06 15 41812679 41812679 G C RPAP1 Silent p.P1235P 0.11 TCGA-ER-A19A-06 15 72021016 72021016 G A THSD4 Missense_Mutation p.E496K 0.04 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 15 76075237 76075237 G A RN7SL319P 5'Flank 0.09 TCGA-ER-A19A-06 15 78885499 78885499 C T CHRNA3 3'Flank 0.08 TCGA-ER-A19A-06 15 79339128 79339128 G A RASGRF1 Missense_Mutation p.P280S 0.08 deleterious(0.05) benign(0.169) TCGA-ER-A19A-06 15 91424025 91424025 C T FURIN Missense_Mutation p.T554I 0.04 tolerated(0.12) benign(0.039) TCGA-ER-A19A-06 15 91835678 91835678 G A SV2B Missense_Mutation p.G650R 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 15 92663826 92663826 A G SLCO3A1 Missense_Mutation p.N381D 0.04 tolerated(0.27) benign(0.032) TCGA-ER-A19A-06 16 22269896 22269896 C T EEF2K Missense_Mutation p.P371S 0.07 tolerated(0.09) benign(0.062) TCGA-ER-A19A-06 16 727045 727045 G A RHBDL1 Silent p.K232K 0.09 TCGA-ER-A19A-06 17 1264404 1264404 G A YWHAE Missense_Mutation p.S187F 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ER-A19A-06 17 16470880 16470880 G A ZNF287 Missense_Mutation p.P56S 0.06 tolerated(0.73) benign(0.005) TCGA-ER-A19A-06 17 19458975 19458975 G A SLC47A1 Silent p.G237G 0.08 TCGA-ER-A19A-06 17 29687605 29687605 C T NF1 Missense_Mutation p.S2754F 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-ER-A19A-06 17 35601576 35601576 G A ACACA Silent p.F890F 0.07 TCGA-ER-A19A-06 17 37785468 37785468 G A PPP1R1B Missense_Mutation p.E43K 0.09 deleterious(0) probably_damaging(0.998) TCGA-ER-A19A-06 17 40343146 40343146 G T GHDC Silent p.L324L 0.08 TCGA-ER-A19A-06 17 4496341 4496341 G A SMTNL2 Missense_Mutation p.R202Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19A-06 17 61560517 61560517 C T ACE Silent p.F490F 0.06 TCGA-ER-A19A-06 17 73491074 73491074 G A KIAA0195 Missense_Mutation p.S896N 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-ER-A19A-06 17 8015436 8015436 G A ALOXE3 Silent p.F385F 0.04 TCGA-ER-A19A-06 18 60241404 60241404 G A ZCCHC2 Missense_Mutation p.G697E 0.07 deleterious(0.03) probably_damaging(0.94) TCGA-ER-A19A-06 19 1079932 1079932 G A HMHA1 Silent p.T522T 0.06 TCGA-ER-A19A-06 19 15791310 15791310 A G CYP4F12 Missense_Mutation p.K169R 0.08 tolerated(0.13) benign(0.008) TCGA-ER-A19A-06 19 16059904 16059904 C T OR10H4 Silent p.F29F 0.04 TCGA-ER-A19A-06 19 19738063 19738063 C T LPAR2 Missense_Mutation p.E11K 0.07 tolerated(0.43) benign(0.003) TCGA-ER-A19A-06 19 2180750 2180750 C T DOT1L Silent p.T40T 0.08 TCGA-ER-A19A-06 19 35786389 35786389 G A MAG Intron 0.06 TCGA-ER-A19A-06 19 35862375 35862375 C T GPR42 Silent p.V38V 0.09 TCGA-ER-A19A-06 19 42265234 42265234 G A CEACAM6 Missense_Mutation p.E168K 0.06 deleterious(0.01) benign(0.18) TCGA-ER-A19A-06 19 43258618 43258618 C T PSG8 Silent p.G370G 0.06 TCGA-ER-A19A-06 19 44980972 44980972 G A ZNF180 Missense_Mutation p.P576S 0.08 deleterious(0) probably_damaging(0.999) TCGA-ER-A19A-06 19 48389444 48389444 C T SULT2A1 Missense_Mutation p.R24K 0.07 tolerated(0.41) benign(0.002) TCGA-ER-A19A-06 19 49249038 49249038 G A IZUMO1 Missense_Mutation p.P27S 0.07 deleterious(0.05) benign(0.068) TCGA-ER-A19A-06 19 49388786 49388786 C T TULP2 Missense_Mutation p.R327K 0.11 tolerated(0.98) benign(0.06) TCGA-ER-A19A-06 19 49671280 49671280 C T TRPM4 Missense_Mutation p.S125L 0.06 deleterious(0.01) benign(0.072) TCGA-ER-A19A-06 19 49797112 49797112 G A SLC6A16 Silent p.F530F 0.05 TCGA-ER-A19A-06 19 50001015 50001015 C T RPS11 Intron 0.06 TCGA-ER-A19A-06 19 51517974 51517974 G A KLK10 3'UTR 0.12 TCGA-ER-A19A-06 19 52619219 52619219 G A ZNF616 Nonsense_Mutation p.R400* 0.07 TCGA-ER-A19A-06 19 53762788 53762788 G A VN1R2 Missense_Mutation p.R387Q 0.06 tolerated(0.15) benign(0) TCGA-ER-A19A-06 19 56369305 56369305 C T NLRP4 Silent p.F182F 0.06 TCGA-ER-A19A-06 19 56370010 56370010 C G NLRP4 Missense_Mutation p.D417E 0.05 tolerated(1) benign(0.001) TCGA-ER-A19A-06 19 56539771 56539771 C T NLRP5 Silent p.S724S 0.05 TCGA-ER-A19A-06 19 57838039 57838039 G T ZNF543 Missense_Mutation p.D62Y 0.08 deleterious(0) possibly_damaging(0.781) TCGA-ER-A19A-06 19 8841876 8841876 C T OR2Z1 Silent p.I162I 0.08 TCGA-ER-A19A-06 19 9068069 9068069 G A MUC16 Silent p.T6459T 0.07 TCGA-ER-A19A-06 1 110146621 110146621 C T GNAT2 Missense_Mutation p.E276K 0.10 tolerated(0.07) benign(0.019) TCGA-ER-A19A-06 1 111059896 111059896 G A KCNA10 Missense_Mutation p.S505F 0.06 deleterious_low_confidence(0.01) benign(0.125) TCGA-ER-A19A-06 1 120337285 120337285 C T REG4 Missense_Mutation p.E145K 0.06 tolerated(0.41) benign(0.153) TCGA-ER-A19A-06 1 120458308 120458308 G A NOTCH2 Missense_Mutation p.A2346V 0.04 tolerated(0.23) benign(0.085) TCGA-ER-A19A-06 1 152127905 152127905 G A RPTN Missense_Mutation p.S557F 0.03 deleterious(0.04) benign(0.02) TCGA-ER-A19A-06 1 155851155 155851155 C T SYT11 Silent p.F384F 0.05 TCGA-ER-A19A-06 1 15789236 15789236 G A CELA2A Missense_Mutation p.R79K 0.06 tolerated(0.21) benign(0.001) TCGA-ER-A19A-06 1 158389802 158389802 G A OR10K2 Silent p.F285F 0.08 TCGA-ER-A19A-06 1 158449784 158449784 C T OR10R2 Silent p.S39S 0.06 TCGA-ER-A19A-06 1 175365770 175365770 C T TNR Missense_Mutation p.E384K 0.08 deleterious(0.04) possibly_damaging(0.889) TCGA-ER-A19A-06 1 179078028 179078028 G A ABL2 Missense_Mutation p.P792S 0.12 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-ER-A19A-06 1 180471304 180471304 C A ACBD6 Missense_Mutation p.S33I 0.09 deleterious_low_confidence(0.02) benign(0.117) TCGA-ER-A19A-06 1 182874684 182874684 C T SHCBP1L Missense_Mutation p.G428E 0.08 deleterious(0) probably_damaging(0.979) TCGA-ER-A19A-06 1 197404165 197404165 G A CRB1 Missense_Mutation p.E1058K 0.08 tolerated(0.7) benign(0.011) TCGA-ER-A19A-06 1 210856890 210856890 C T KCNH1 Silent p.Q901Q 0.09 TCGA-ER-A19A-06 1 32829396 32829396 C T TSSK3 Missense_Mutation p.R116C 0.07 tolerated(0.06) benign(0.002) TCGA-ER-A19A-06 1 3328862 3328862 G A PRDM16 Missense_Mutation p.E701K 0.07 deleterious(0.01) possibly_damaging(0.852) TCGA-ER-A19A-06 1 42875708 42875708 C T RIMKLA Silent p.L179L 0.11 TCGA-ER-A19A-06 1 43825722 43825722 C T CDC20 Silent p.S170S 0.05 TCGA-ER-A19A-06 1 57173265 57173265 C T PRKAA2 Missense_Mutation p.S513F 0.06 deleterious_low_confidence(0.03) benign(0.14) TCGA-ER-A19A-06 1 57216843 57216843 G A C1orf168 Nonsense_Mutation p.Q421* 0.14 TCGA-ER-A19A-06 1 74901813 74901813 G A TNNI3K Missense_Mutation p.G709R 0.07 deleterious(0) probably_damaging(0.991) TCGA-ER-A19A-06 1 82447545 82447545 C T LPHN2 Missense_Mutation p.S1039F 0.05 deleterious(0) probably_damaging(0.986) TCGA-ER-A19A-06 20 1963712 1963712 C T PDYN Missense_Mutation p.V7I 0.09 tolerated(0.18) benign(0.035) TCGA-ER-A19A-06 20 31571702 31571702 C T SUN5 Nonsense_Mutation p.W346* 0.07 TCGA-ER-A19A-06 20 32879290 32879290 A G AHCY Missense_Mutation p.Y165H 0.05 tolerated_low_confidence(0.07) benign(0.018) TCGA-ER-A19A-06 20 44174424 44174424 G T EPPIN Intron 0.08 TCGA-ER-A19A-06 20 47741135 47741135 G A STAU1 Intron 0.07 TCGA-ER-A19A-06 20 50342430 50342430 G A ATP9A Silent p.F85F 0.09 TCGA-ER-A19A-06 20 5282926 5282926 G A PROKR2 Silent p.F305F 0.08 TCGA-ER-A19A-06 20 61513451 61513451 G A DIDO1 Missense_Mutation p.P1286L 0.08 benign(0.024) TCGA-ER-A19A-06 20 9438063 9438063 G A PLCB4 Missense_Mutation p.G988E 0.07 tolerated(0.74) benign(0.004) TCGA-ER-A19A-06 21 44840163 44840163 G A SIK1 Missense_Mutation p.A308V 0.08 tolerated(1) benign(0.001) TCGA-ER-A19A-06 21 47541503 47541503 C T COL6A2 Missense_Mutation p.R498C 0.10 deleterious(0) probably_damaging(0.986) TCGA-ER-A19A-06 22 17288877 17288877 G A XKR3 Silent p.L29L 0.05 TCGA-ER-A19A-06 22 20074158 20074158 C T DGCR8 Silent p.I224I 0.05 TCGA-ER-A19A-06 22 23040796 23040796 C T IGLV2-23 Missense_Mutation p.R82C 0.06 deleterious_low_confidence(0) benign(0.312) TCGA-ER-A19A-06 22 37876307 37876307 G A MFNG Missense_Mutation p.A112V 0.16 deleterious(0.01) possibly_damaging(0.871) TCGA-ER-A19A-06 22 38221146 38221146 G A GALR3 Nonsense_Mutation p.W259* 0.16 TCGA-ER-A19A-06 22 38696918 38696918 G A CSNK1E Missense_Mutation p.H126Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.673) TCGA-ER-A19A-06 22 38917728 38917728 A T DMC1 Missense_Mutation p.F280I 0.09 deleterious(0.01) possibly_damaging(0.883) TCGA-ER-A19A-06 22 38917729 38917729 G A DMC1 Silent p.T279T 0.09 TCGA-ER-A19A-06 22 39482342 39482342 T G APOBEC3G Missense_Mutation p.V265G 0.05 deleterious(0.01) possibly_damaging(0.849) TCGA-ER-A19A-06 22 51159572 51159572 C T SHANK3 Missense_Mutation p.P1120L 0.27 probably_damaging(0.975) TCGA-ER-A19A-06 2 128253686 128253686 C T IWS1 Missense_Mutation p.R535Q 0.05 deleterious(0) benign(0.446) TCGA-ER-A19A-06 2 129026429 129026429 G A HS6ST1 Silent p.I181I 0.13 TCGA-ER-A19A-06 2 183070702 183070702 C T PDE1A Missense_Mutation p.M305I 0.14 deleterious(0.04) benign(0.015) TCGA-ER-A19A-06 2 191301840 191301840 C T MFSD6 Missense_Mutation p.P362L 0.11 tolerated(0.47) benign(0.001) TCGA-ER-A19A-06 2 21229891 21229891 G A APOB Silent p.F3283F 0.03 TCGA-ER-A19A-06 2 216271880 216271880 G A FN1 Nonsense_Mutation p.Q895* 0.07 TCGA-ER-A19A-06 2 220504246 220504246 C T SLC4A3 Silent p.S1049S 0.08 TCGA-ER-A19A-06 2 225370813 225370813 G A CUL3 Missense_Mutation p.L356F 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19A-06 2 234638020 234638020 C T UGT1A3 Missense_Mutation p.S83L 0.08 deleterious(0.02) benign(0.105) TCGA-ER-A19A-06 2 43520263 43520263 G A THADA Missense_Mutation p.P1510S 0.03 deleterious(0) benign(0.205) TCGA-ER-A19A-06 2 87042659 87042659 G A CD8B 3'Flank 0.06 TCGA-ER-A19A-06 2 89475915 89475915 C T IGKV2-24 Missense_Mutation p.R86K 0.05 deleterious(0.05) possibly_damaging(0.82) TCGA-ER-A19A-06 3 11406184 11406184 C T ATG7 Silent p.T617T 0.05 TCGA-ER-A19A-06 3 124153237 124153237 C T KALRN Silent p.A969A 0.09 TCGA-ER-A19A-06 3 137790621 137790621 G A DZIP1L Silent p.V493V 0.05 TCGA-ER-A19A-06 3 138187005 138187005 C T ESYT3 Missense_Mutation p.S426L 0.05 deleterious(0) benign(0.309) TCGA-ER-A19A-06 3 148563342 148563342 C T CPB1 Missense_Mutation p.H304Y 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 3 150917181 150917181 G A GPR171 5'UTR 0.09 TCGA-ER-A19A-06 3 16237390 16237390 C T GALNT15 Silent p.A221A 0.10 TCGA-ER-A19A-06 3 167189541 167189541 C T SERPINI2 Missense_Mutation p.E28K 0.06 deleterious(0.02) benign(0.131) TCGA-ER-A19A-06 3 186006599 186006599 G A DGKG Silent p.V148V 0.05 TCGA-ER-A19A-06 3 36898710 36898710 C T TRANK1 Missense_Mutation p.E791K 0.04 deleterious(0) probably_damaging(0.945) TCGA-ER-A19A-06 3 38182688 38182688 C T MYD88 Silent p.L289L 0.06 TCGA-ER-A19A-06 3 46479551 46479551 G A LTF Missense_Mutation p.L660F 0.06 deleterious(0) probably_damaging(0.99) TCGA-ER-A19A-06 3 51747031 51747031 C T GRM2 Silent p.F331F 0.08 TCGA-ER-A19A-06 3 67054691 67054691 C T KBTBD8 Missense_Mutation p.H434Y 0.05 tolerated(1) benign(0.131) TCGA-ER-A19A-06 3 98304426 98304426 G A CPOX Missense_Mutation p.S344F 0.06 deleterious(0.01) benign(0.073) TCGA-ER-A19A-06 4 138450896 138450896 G A PCDH18 Missense_Mutation p.P783S 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-ER-A19A-06 4 158060056 158060056 G A GLRB Missense_Mutation p.E236K 0.08 deleterious(0.02) benign(0.185) TCGA-ER-A19A-06 4 166915560 166915560 G A TLL1 Missense_Mutation p.G130E 0.08 tolerated(0.44) benign(0.001) TCGA-ER-A19A-06 4 189068016 189068016 C T TRIML1 Silent p.L299L 0.06 TCGA-ER-A19A-06 5 13928224 13928224 C T DNAH5 Missense_Mutation p.D86N 0.06 benign(0.016) TCGA-ER-A19A-06 5 140719940 140719940 G A PCDHGA2 Missense_Mutation p.G468R 0.05 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-ER-A19A-06 5 148422290 148422290 C T SH3TC2 Missense_Mutation p.E166K 0.06 tolerated(0.26) benign(0.064) TCGA-ER-A19A-06 5 159782013 159782013 G A C1QTNF2 Silent p.I47I 0.15 TCGA-ER-A19A-06 5 167630770 167630770 C T TENM2 Silent p.F1169F 0.05 TCGA-ER-A19A-06 5 38427349 38427349 C T EGFLAM Silent p.V683V 0.05 TCGA-ER-A19A-06 5 38869197 38869197 C T OSMR Silent p.S17S 0.06 TCGA-ER-A19A-06 5 79378216 79378216 G C THBS4 Intron 0.06 TCGA-ER-A19A-06 5 89920996 89920996 G A GPR98 Missense_Mutation p.G203E 0.17 probably_damaging(0.993) TCGA-ER-A19A-06 6 100368900 100368900 G A MCHR2 Silent p.F313F 0.07 TCGA-ER-A19A-06 6 110942464 110942464 C A CDK19 Missense_Mutation p.G407V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19A-06 6 110942465 110942465 C T CDK19 Missense_Mutation p.G407R 0.08 deleterious(0) probably_damaging(0.999) TCGA-ER-A19A-06 6 116747888 116747888 G A DSE Missense_Mutation p.E190K 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-ER-A19A-06 6 152949425 152949425 G A SYNE1 Silent p.I14I 0.06 TCGA-ER-A19A-06 6 161012037 161012037 C T LPA Silent p.L1242L 0.10 TCGA-ER-A19A-06 6 161162437 161162437 G A PLG Missense_Mutation p.G705R 0.09 deleterious(0) probably_damaging(0.998) TCGA-ER-A19A-06 6 29364501 29364501 G A OR12D2 Missense_Mutation p.E9K 0.07 deleterious(0.03) benign(0.053) TCGA-ER-A19A-06 6 31778018 31778018 C T HSPA1L Missense_Mutation p.E578K 0.03 deleterious_low_confidence(0.05) possibly_damaging(0.539) TCGA-ER-A19A-06 6 31912759 31912759 G A C2 Missense_Mutation p.E678K 0.03 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19A-06 6 32029231 32029231 G A TNXB Silent p.L2479L 0.04 TCGA-ER-A19A-06 6 32917102 32917102 C T HLA-DMA Missense_Mutation p.G243S 0.08 tolerated(0.28) probably_damaging(1) TCGA-ER-A19A-06 6 35048853 35048853 C T ANKS1A Missense_Mutation p.P876L 0.14 tolerated(0.07) possibly_damaging(0.878) TCGA-ER-A19A-06 6 4099407 4099407 C T C6orf201 Missense_Mutation p.P87S 0.14 deleterious(0.02) probably_damaging(0.917) TCGA-ER-A19A-06 6 53986275 53986275 C T MLIP Silent p.L32L 0.06 TCGA-ER-A19A-06 6 56765251 56765251 G A DST Missense_Mutation p.H129Y 0.05 deleterious_low_confidence(0) benign(0.029) TCGA-ER-A19A-06 6 7405486 7405486 C T RIOK1 Silent p.F367F 0.10 TCGA-ER-A19A-06 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.05 deleterious(0) probably_damaging(0.937) TCGA-ER-A19A-06 6 76024879 76024879 G A FILIP1 Silent p.A223A 0.10 TCGA-ER-A19A-06 7 100344181 100344181 G A ZAN Missense_Mutation p.D263N 0.08 probably_damaging(0.998) TCGA-ER-A19A-06 7 100681341 100681341 C T MUC17 Missense_Mutation p.P2215L 0.05 unknown(0) TCGA-ER-A19A-06 7 100682054 100682054 G A MUC17 Missense_Mutation p.E2453K 0.04 possibly_damaging(0.824) TCGA-ER-A19A-06 7 100685192 100685192 C T MUC17 Missense_Mutation p.P3499S 0.05 benign(0.095) TCGA-ER-A19A-06 7 128038621 128038621 G A IMPDH1 Silent p.I307I 0.05 TCGA-ER-A19A-06 7 140494231 140494231 G A BRAF Silent p.S339S 0.08 TCGA-ER-A19A-06 7 141537835 141537835 G A PRSS37 Silent p.I85I 0.07 TCGA-ER-A19A-06 7 141618723 141618723 C T OR9A4 Silent p.F16F 0.05 TCGA-ER-A19A-06 7 141619422 141619422 G A OR9A4 Silent p.V249V 0.11 TCGA-ER-A19A-06 7 141673373 141673373 C T TAS2R38 Silent p.V39V 0.07 TCGA-ER-A19A-06 7 150269887 150269887 C T GIMAP4 Silent p.L243L 0.11 TCGA-ER-A19A-06 7 150327203 150327203 G A GIMAP6 Missense_Mutation p.P10S 0.06 tolerated(0.41) unknown(0) TCGA-ER-A19A-06 7 150439461 150439461 C T GIMAP5 Silent p.V78V 0.07 TCGA-ER-A19A-06 7 23793998 23793998 G A STK31 Missense_Mutation p.G400R 0.07 tolerated(0.07) benign(0.078) TCGA-ER-A19A-06 7 23808714 23808714 G A STK31 Missense_Mutation p.R506K 0.06 tolerated(0.96) benign(0.002) TCGA-ER-A19A-06 7 28610108 28610108 G A CREB5 Silent p.Q139Q 0.05 TCGA-ER-A19A-06 7 2987263 2987263 C T CARD11 Missense_Mutation p.D56N 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 7 43436449 43436449 G A HECW1 Missense_Mutation p.G198R 0.07 tolerated(0.06) benign(0.369) TCGA-ER-A19A-06 7 4965083 4965083 G A MMD2 Missense_Mutation p.A43V 0.05 deleterious(0) probably_damaging(0.948) TCGA-ER-A19A-06 7 50121463 50121463 G A ZPBP Missense_Mutation p.P81S 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19A-06 7 88424246 88424246 G A C7orf62 Missense_Mutation p.S4L 0.05 tolerated_low_confidence(0.54) benign(0) TCGA-ER-A19A-06 7 909027 909027 C T SUN1 Silent p.S674S 0.07 TCGA-ER-A19A-06 8 101243516 101243516 G A SPAG1 Missense_Mutation p.R663K 0.07 deleterious(0.05) probably_damaging(1) TCGA-ER-A19A-06 8 118159306 118159306 A T SLC30A8 Missense_Mutation p.K62M 0.04 deleterious(0.05) benign(0.155) TCGA-ER-A19A-06 8 121381652 121381652 C T COL14A1 Missense_Mutation p.P1747S 0.08 tolerated(0.19) possibly_damaging(0.776) TCGA-ER-A19A-06 8 140630831 140630831 G A KCNK9 Silent p.A265A 0.08 TCGA-ER-A19A-06 8 2813237 2813237 C T CSMD1 Missense_Mutation p.D3290N 0.06 probably_damaging(0.994) TCGA-ER-A19A-06 8 99146184 99146184 C T POP1 Missense_Mutation p.S248F 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 9 104032238 104032238 G A LPPR1 Missense_Mutation p.G47E 0.08 deleterious(0) probably_damaging(0.999) TCGA-ER-A19A-06 9 125330478 125330478 G A OR1L8 Silent p.I93I 0.09 TCGA-ER-A19A-06 9 126132728 126132728 C T CRB2 Missense_Mutation p.R466C 0.13 deleterious(0.03) possibly_damaging(0.898) TCGA-ER-A19A-06 9 139945549 139945549 C T ENTPD2 Silent p.R193R 0.09 TCGA-ER-A19A-06 9 4826886 4826886 C T RCL1 Silent p.L79L 0.05 TCGA-ER-A19A-06 9 71439054 71439054 C T PIP5K1B Intron 0.04 TCGA-ER-A19A-06 9 84605862 84605862 G A SPATA31D1 Silent p.L159L 0.09 TCGA-ER-A19A-06 X 106331885 106331885 G A RBM41 Silent p.L236L 0.11 TCGA-ER-A19A-06 X 108684589 108684589 C T GUCY2F Silent p.A564A 0.06 TCGA-ER-A19A-06 X 110385365 110385365 C T PAK3 Missense_Mutation p.P73S 0.05 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 X 114541098 114541098 G A LUZP4 Missense_Mutation p.R224K 0.09 deleterious(0.02) possibly_damaging(0.567) TCGA-ER-A19A-06 X 127185107 127185107 G A ACTRT1 Missense_Mutation p.S360L 0.09 deleterious(0.05) possibly_damaging(0.857) TCGA-ER-A19A-06 X 134993456 134993456 G A SAGE1 Missense_Mutation p.G704E 0.11 tolerated(0.1) probably_damaging(0.936) TCGA-ER-A19A-06 X 13624618 13624618 G A EGFL6 Missense_Mutation p.R214Q 0.09 tolerated(0.08) benign(0.047) TCGA-ER-A19A-06 X 138820208 138820208 C T ATP11C Missense_Mutation p.R1055K 0.21 tolerated(0.1) probably_damaging(0.989) TCGA-ER-A19A-06 X 151806767 151806767 C T GABRQ Silent p.S37S 0.13 TCGA-ER-A19A-06 X 151870034 151870034 C T MAGEA6 Missense_Mutation p.P242S 0.08 deleterious(0.02) benign(0.436) TCGA-ER-A19A-06 X 153716270 153716270 C T SLC10A3 Missense_Mutation p.G337D 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A19A-06 X 154507273 154507273 G A CLIC2 Silent p.A221A 0.14 TCGA-ER-A19A-06 X 1742160 1742160 C T ASMT Silent p.I66I 0.10 TCGA-ER-A19A-06 X 18221933 18221933 C T BEND2 Missense_Mutation p.E199K 0.13 deleterious(0.02) benign(0.194) TCGA-ER-A19A-06 X 19389542 19389542 G A MAP3K15 Missense_Mutation p.S1072L 0.09 tolerated(0.32) possibly_damaging(0.721) TCGA-ER-A19A-06 X 30322750 30322750 G A NR0B1 Silent p.I453I 0.10 TCGA-ER-A19A-06 X 37027685 37027685 C T FAM47C Missense_Mutation p.P401L 0.13 tolerated(0.67) benign(0.003) TCGA-ER-A19A-06 X 37893191 37893191 G A SYTL5 Missense_Mutation p.E17K 0.14 deleterious(0) possibly_damaging(0.858) TCGA-ER-A19A-06 X 40450601 40450601 C T ATP6AP2 Missense_Mutation p.S95L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19A-06 X 41555476 41555476 G A GPR34 Missense_Mutation p.G197E 0.14 tolerated(1) benign(0.006) TCGA-ER-A19A-06 X 57934541 57934541 A C ZXDA Missense_Mutation p.F772V 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-ER-A19A-06 X 70598118 70598118 T C TAF1 Missense_Mutation p.S343P 0.09 tolerated(0.17) possibly_damaging(0.601) TCGA-ER-A19A-06 X 9900855 9900855 C T SHROOM2 Missense_Mutation p.P1178S 0.13 deleterious(0) probably_damaging(0.992) TCGA-ER-A19A-06 Y 4925237 4925237 C T PCDH11Y Missense_Mutation p.R125C 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 10 91477240 91477240 T C KIF20B Missense_Mutation p.I371T 0.28 tolerated(1) benign(0.085) TCGA-ER-A19B-06 11 114121168 114121168 A G ZBTB16 Missense_Mutation p.Y638C 0.25 deleterious(0) probably_damaging(0.947) TCGA-ER-A19B-06 11 124293983 124293983 G A OR8B4 Missense_Mutation p.S262F 0.47 deleterious_low_confidence(0.04) benign(0.015) TCGA-ER-A19B-06 11 16863173 16863173 C T PLEKHA7 Missense_Mutation p.D265N 0.59 deleterious(0) possibly_damaging(0.728) TCGA-ER-A19B-06 11 66039915 66039915 A G RAB1B Missense_Mutation p.Y88C 0.22 deleterious(0.01) possibly_damaging(0.864) TCGA-ER-A19B-06 11 74547223 74547223 A - RNF169 Frame_Shift_Del p.L526Wfs*26 0.23 TCGA-ER-A19B-06 12 101555752 101555752 C T SLC5A8 Missense_Mutation p.G544R 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 12 10313476 10313476 A G OLR1 Missense_Mutation p.F158S 0.20 deleterious(0) probably_damaging(0.975) TCGA-ER-A19B-06 12 119617327 119617327 C G HSPB8 Silent p.P70P 0.44 TCGA-ER-A19B-06 12 121098957 121098957 C A CABP1 Missense_Mutation p.H341Q 0.21 tolerated(0.52) benign(0.161) TCGA-ER-A19B-06 12 18573894 18573894 C T PIK3C2G Missense_Mutation p.R738C 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 12 19593296 19593297 GG - AEBP2 Frame_Shift_Del p.E222Gfs*40 0.09 TCGA-ER-A19B-06 12 2107114 2107114 A G DCP1B Missense_Mutation p.F60L 0.15 deleterious(0) probably_damaging(0.998) TCGA-ER-A19B-06 12 21712632 21712632 A G GYS2 Silent p.H394H 0.16 TCGA-ER-A19B-06 12 55250577 55250577 C T MUCL1 Missense_Mutation p.P42S 0.43 tolerated_low_confidence(0.22) unknown(0) TCGA-ER-A19B-06 12 72863541 72863541 T C TRHDE Missense_Mutation p.L395P 0.15 deleterious(0.02) possibly_damaging(0.831) TCGA-ER-A19B-06 12 8374864 8374864 C T FAM90A1 Missense_Mutation p.E317K 0.50 tolerated(0.81) benign(0.012) TCGA-ER-A19B-06 12 85441228 85441228 A G LRRIQ1 Missense_Mutation p.K220E 0.11 tolerated(0.07) benign(0.437) TCGA-ER-A19B-06 12 97306520 97306520 A G NEDD1 Silent p.A59A 0.19 TCGA-ER-A19B-06 14 50605367 50605367 T C SOS2 Missense_Mutation p.N974S 0.22 deleterious(0) probably_damaging(0.921) TCGA-ER-A19B-06 15 26793000 26793000 G A GABRB3 Silent p.I454I 0.31 TCGA-ER-A19B-06 15 42579894 42579894 T C GANC Silent p.P69P 0.08 TCGA-ER-A19B-06 15 48443761 48443761 G A MYEF2 Silent p.Y405Y 0.24 TCGA-ER-A19B-06 16 1612079 1612079 C G IFT140 Missense_Mutation p.E702D 0.64 tolerated(0.17) benign(0.032) TCGA-ER-A19B-06 16 4016397 4016397 G A ADCY9 Silent p.R1147R 0.39 TCGA-ER-A19B-06 16 50707827 50707827 C T SNX20 Silent p.G147G 0.14 TCGA-ER-A19B-06 16 71571634 71571634 G A CHST4 Missense_Mutation p.D352N 0.71 tolerated(0.22) benign(0.024) TCGA-ER-A19B-06 16 77232194 77232194 A G MON1B Missense_Mutation p.T545A 0.31 tolerated_low_confidence(0.32) benign(0.001) TCGA-ER-A19B-06 17 11583132 11583132 G A DNAH9 Missense_Mutation p.E1138K 0.26 benign(0.003) TCGA-ER-A19B-06 17 11648356 11648356 G A DNAH9 Silent p.A2118A 0.28 TCGA-ER-A19B-06 17 15215662 15215662 G T TEKT3 Missense_Mutation p.Q339K 0.23 deleterious(0.01) possibly_damaging(0.626) TCGA-ER-A19B-06 17 27042505 27042505 G A RAB34 Silent p.L191L 0.16 TCGA-ER-A19B-06 17 28890334 28890334 G A TBC1D29 Missense_Mutation p.R115K 0.20 deleterious(0.05) possibly_damaging(0.87) TCGA-ER-A19B-06 17 33592480 33592480 G T SLFN5 Missense_Mutation p.W750L 0.09 deleterious(0.04) benign(0.016) TCGA-ER-A19B-06 17 57189627 57189627 A G SKA2 3'UTR 0.19 TCGA-ER-A19B-06 17 62149454 62149454 T C ERN1 Missense_Mutation p.Q122R 0.20 deleterious(0.02) probably_damaging(0.985) TCGA-ER-A19B-06 17 71228388 71228388 A T FAM104A Missense_Mutation p.Y20N 0.29 tolerated_low_confidence(0.23) possibly_damaging(0.576) TCGA-ER-A19B-06 17 74307767 74307767 A G PRPSAP1 Silent p.N338N 0.29 TCGA-ER-A19B-06 17 7752375 7752375 C T KDM6B Silent p.T923T 0.27 TCGA-ER-A19B-06 18 61471868 61471868 G A SERPINB7 Silent p.%3D 0.86 TCGA-ER-A19B-06 18 67742646 67742646 A G RTTN Silent p.C1502C 0.28 TCGA-ER-A19B-06 18 7049160 7049160 G A LAMA1 Nonsense_Mutation p.Q229* 0.35 TCGA-ER-A19B-06 18 9195588 9195588 A G ANKRD12 Missense_Mutation p.I43V 0.43 tolerated(0.62) benign(0.002) TCGA-ER-A19B-06 19 11472104 11472104 G A DKFZP761J1410 Silent p.A176A 0.33 TCGA-ER-A19B-06 19 36530862 36530862 C T THAP8 Missense_Mutation p.R87Q 0.22 tolerated(0.63) benign(0.002) TCGA-ER-A19B-06 19 39078451 39078451 T C MAP4K1 Nonstop_Mutation p.*834Wext*37 0.31 TCGA-ER-A19B-06 19 43411754 43411754 C T PSG6 Missense_Mutation p.S320N 0.26 tolerated(0.09) benign(0.4) TCGA-ER-A19B-06 19 43420344 43420344 G A PSG6 Silent p.T120T 0.23 TCGA-ER-A19B-06 19 44832140 44832140 A T ZNF112 Missense_Mutation p.F730I 0.24 deleterious(0) probably_damaging(0.997) TCGA-ER-A19B-06 19 49391383 49391383 A G TULP2 Missense_Mutation p.S258P 0.18 tolerated(0.23) benign(0.308) TCGA-ER-A19B-06 1 114253052 114253052 A G PHTF1 Missense_Mutation p.S365P 0.23 tolerated(0.06) benign(0.236) TCGA-ER-A19B-06 1 118558773 118558773 G A SPAG17 Missense_Mutation p.H1368Y 0.29 deleterious(0.03) benign(0.221) TCGA-ER-A19B-06 1 150971957 150971957 G A FAM63A Missense_Mutation p.T338I 0.29 deleterious(0) probably_damaging(0.92) TCGA-ER-A19B-06 1 151079643 151079643 C T GABPB2 Silent p.I289I 0.43 TCGA-ER-A19B-06 1 153636568 153636568 A G ILF2 Missense_Mutation p.I232T 0.21 tolerated(0.63) benign(0.002) TCGA-ER-A19B-06 1 183498024 183498024 T C SMG7 Intron 0.25 TCGA-ER-A19B-06 1 186276943 186276943 C G PRG4 Missense_Mutation p.P698A 0.23 unknown(0) TCGA-ER-A19B-06 1 18809456 18809456 C T KLHDC7A Missense_Mutation p.P661S 0.35 deleterious(0.03) possibly_damaging(0.489) TCGA-ER-A19B-06 1 201763696 201763696 A G NAV1 Missense_Mutation p.T1170A 0.26 tolerated(0.21) benign(0.017) TCGA-ER-A19B-06 1 205031687 205031687 A G CNTN2 Silent p.L410L 0.13 TCGA-ER-A19B-06 1 205039135 205039135 C T CNTN2 Missense_Mutation p.R793C 0.52 deleterious(0.04) benign(0.032) TCGA-ER-A19B-06 1 236716882 236716882 T C HEATR1 Missense_Mutation p.K2079R 0.30 tolerated(0.07) benign(0.414) TCGA-ER-A19B-06 1 242016700 242016700 C T EXO1 Missense_Mutation p.R108C 0.30 deleterious(0) probably_damaging(0.919) TCGA-ER-A19B-06 1 27089778 27089778 T C ARID1A Splice_Site p.X911_splice 0.26 TCGA-ER-A19B-06 1 28148824 28148824 T C STX12 Missense_Mutation p.V272A 0.24 tolerated(1) benign(0.153) TCGA-ER-A19B-06 1 3551604 3551604 A G WRAP73 Missense_Mutation p.I258T 0.25 tolerated(0.06) benign(0.027) TCGA-ER-A19B-06 1 45553649 45553649 A G ZSWIM5 Missense_Mutation p.Y286H 0.07 tolerated(0.06) unknown(0) TCGA-ER-A19B-06 1 46879241 46879241 A G FAAH Silent p.S578S 0.15 TCGA-ER-A19B-06 1 50884984 50884984 G A DMRTA2 Missense_Mutation p.R328W 0.28 deleterious(0) possibly_damaging(0.818) TCGA-ER-A19B-06 1 66083654 66083654 C T LEPR Silent p.I740I 0.22 TCGA-ER-A19B-06 1 8022834 8022835 - A PARK7 5'UTR 0.23 TCGA-ER-A19B-06 1 899317 899317 C T KLHL17 Missense_Mutation p.P458L 0.48 deleterious(0.04) probably_damaging(0.957) TCGA-ER-A19B-06 20 18526600 18526600 T G SEC23B Missense_Mutation p.C556G 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-ER-A19B-06 20 21494091 21494091 A G NKX2-2 Missense_Mutation p.Y73H 0.18 tolerated(0.05) benign(0.017) TCGA-ER-A19B-06 20 43248375 43248375 G A ADA 3'UTR 0.45 TCGA-ER-A19B-06 22 39712780 39712780 C T RPL3 Silent p.K144K 0.12 TCGA-ER-A19B-06 22 41928710 41928710 T C POLR3H Missense_Mutation p.E83G 0.15 deleterious(0) probably_damaging(0.992) TCGA-ER-A19B-06 22 44528816 44528816 T C PARVB Missense_Mutation p.V220A 0.08 deleterious(0) probably_damaging(0.944) TCGA-ER-A19B-06 22 50661002 50661002 A G TUBGCP6 Missense_Mutation p.Y764H 0.08 deleterious(0) possibly_damaging(0.876) TCGA-ER-A19B-06 2 11761042 11761042 A G GREB1 Silent p.T1352T 0.17 TCGA-ER-A19B-06 2 160042337 160042337 G A TANC1 Missense_Mutation p.R849H 0.40 deleterious(0) possibly_damaging(0.847) TCGA-ER-A19B-06 2 162751283 162751283 G A SLC4A10 Missense_Mutation p.G430E 0.42 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 2 172950461 172950461 T C DLX1 Missense_Mutation p.V19A 0.17 tolerated(1) benign(0.003) TCGA-ER-A19B-06 2 190719501 190719501 A G PMS1 Silent p.G501G 0.18 TCGA-ER-A19B-06 2 219360645 219360645 A G USP37 Missense_Mutation p.L437S 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 2 230456470 230456470 G T DNER Silent p.P137P 0.50 TCGA-ER-A19B-06 2 27263000 27263000 C T TMEM214 Silent p.F575F 0.45 TCGA-ER-A19B-06 2 48809275 48809275 C T STON1-GTF2A1L Silent p.I501I 0.40 TCGA-ER-A19B-06 2 70439819 70439819 A G TIA1 3'UTR 0.18 TCGA-ER-A19B-06 2 71351586 71351586 C T MCEE Nonsense_Mutation p.W43* 0.19 TCGA-ER-A19B-06 2 99779004 99779004 G A LIPT1 Missense_Mutation p.S195N 0.21 tolerated(0.07) probably_damaging(0.991) TCGA-ER-A19B-06 3 111603065 111603065 G A PHLDB2 Silent p.L47L 0.32 TCGA-ER-A19B-06 3 184001600 184001600 G A ECE2 Missense_Mutation p.E400K 0.67 deleterious(0.01) benign(0.243) TCGA-ER-A19B-06 3 21606177 21606177 C T ZNF385D Splice_Site p.X56_splice 0.18 TCGA-ER-A19B-06 3 36888812 36888812 G A TRANK1 Missense_Mutation p.S1594F 0.21 deleterious(0) probably_damaging(0.995) TCGA-ER-A19B-06 3 3888346 3888346 C T LRRN1 Missense_Mutation p.S674L 0.45 tolerated(0.16) benign(0.1) TCGA-ER-A19B-06 3 46449815 46449815 T C CCRL2 Missense_Mutation p.V94A 0.33 tolerated(0.05) benign(0.099) TCGA-ER-A19B-06 4 30725854 30725854 A G PCDH7 Missense_Mutation p.D937G 0.29 tolerated(0.14) probably_damaging(0.966) TCGA-ER-A19B-06 4 96166144 96166144 A G UNC5C Silent p.C309C 0.14 TCGA-ER-A19B-06 5 140037240 140037240 G A IK Silent p.K301K 0.33 TCGA-ER-A19B-06 5 94050566 94050566 T C MCTP1 Missense_Mutation p.N879S 0.12 tolerated(0.06) possibly_damaging(0.78) TCGA-ER-A19B-06 6 114281154 114281154 C T HDAC2 Silent p.Q27Q 0.37 TCGA-ER-A19B-06 6 116892810 116892810 C T RWDD1 Missense_Mutation p.S22F 0.23 deleterious(0.02) benign(0.109) TCGA-ER-A19B-06 6 136173098 136173098 C T PDE7B 5'UTR 0.43 TCGA-ER-A19B-06 6 13977949 13977949 G A RNF182 Missense_Mutation p.G200E 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 6 26104341 26104341 C G HIST1H4C Missense_Mutation p.R56G 0.24 deleterious(0) probably_damaging(0.997) TCGA-ER-A19B-06 6 27101078 27101078 G C HIST1H2AG Missense_Mutation p.K76N 0.10 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-ER-A19B-06 6 31543638 31543638 C T TNF Silent p.I40I 0.36 TCGA-ER-A19B-06 6 31743739 31743739 A T VWA7 Splice_Site p.X171_splice 0.38 TCGA-ER-A19B-06 7 112096077 112096077 G C IFRD1 Missense_Mutation p.E74Q 0.16 tolerated(1) probably_damaging(0.947) TCGA-ER-A19B-06 7 11676265 11676265 T C THSD7A Missense_Mutation p.I172V 0.11 tolerated(0.59) benign(0.001) TCGA-ER-A19B-06 7 129046309 129046309 T C AHCYL2 Splice_Site p.X432_splice 0.11 TCGA-ER-A19B-06 7 140156594 140156594 C T MKRN1 Missense_Mutation p.G282R 0.17 deleterious(0) probably_damaging(0.996) TCGA-ER-A19B-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.78 deleterious(0) probably_damaging(0.967) TCGA-ER-A19B-06 7 150439579 150439579 A G GIMAP5 Missense_Mutation p.I118V 0.11 deleterious(0) benign(0.166) TCGA-ER-A19B-06 7 150646050 150646050 T C KCNH2 Missense_Mutation p.D829G 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19B-06 7 36194142 36194142 A G EEPD1 Missense_Mutation p.Y70C 0.15 tolerated(0.19) benign(0.012) TCGA-ER-A19B-06 7 56169427 56169427 A G CHCHD2 3'UTR 0.26 TCGA-ER-A19B-06 7 72856840 72856840 T C BAZ1B Missense_Mutation p.I1380V 0.19 tolerated(0.28) benign(0.022) TCGA-ER-A19B-06 7 73150998 73150998 A G ABHD11 Missense_Mutation p.M280T 0.25 deleterious(0.05) benign(0.017) TCGA-ER-A19B-06 7 74482554 74482554 T C WBSCR16 Missense_Mutation p.D169G 0.11 tolerated(0.29) benign(0.005) TCGA-ER-A19B-06 7 75625914 75625914 A C STYXL1 Missense_Mutation p.S272A 0.18 tolerated(1) benign(0.034) TCGA-ER-A19B-06 7 75912381 75912381 G A SRRM3 Silent p.R565R 0.95 TCGA-ER-A19B-06 7 94214819 94214819 A G SGCE Missense_Mutation p.Y461H 0.15 tolerated_low_confidence(0.07) benign(0.003) TCGA-ER-A19B-06 8 133945820 133945820 G A TG Missense_Mutation p.E1611K 0.56 deleterious(0.05) benign(0.022) TCGA-ER-A19B-06 8 142366966 142366966 G C GPR20 Missense_Mutation p.A353G 0.38 tolerated_low_confidence(0.26) benign(0.002) TCGA-ER-A19B-06 8 1842704 1842704 C T ARHGEF10 Missense_Mutation p.S469F 0.50 deleterious(0) possibly_damaging(0.73) TCGA-ER-A19B-06 8 77767728 77767728 G A ZFHX4 Silent p.T2857T 0.46 TCGA-ER-A19B-06 9 115925079 115925079 T C SLC31A2 Missense_Mutation p.V105A 0.05 tolerated(0.14) probably_damaging(0.931) TCGA-ER-A19B-06 9 124522284 124522284 A G DAB2IP Missense_Mutation p.T218A 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A19B-06 9 19361850 19361850 C T DENND4C Silent p.L1756L 0.66 TCGA-ER-A19B-06 X 117960020 117960020 C G ZCCHC12 Missense_Mutation p.D271E 0.87 deleterious_low_confidence(0.03) benign(0.1) TCGA-ER-A19B-06 X 12904178 12904178 A T TLR7 Missense_Mutation p.Y184F 0.77 deleterious(0.05) possibly_damaging(0.728) TCGA-ER-A19B-06 X 129149266 129149266 T C BCORL1 Missense_Mutation p.S840P 0.29 benign(0.013) TCGA-ER-A19C-06 10 117001410 117001410 T G ATRNL1 Missense_Mutation p.L528R 0.48 deleterious(0) possibly_damaging(0.636) TCGA-ER-A19C-06 10 37488708 37488708 G A ANKRD30A Missense_Mutation p.D868N 0.47 tolerated(1) benign(0) TCGA-ER-A19C-06 10 46969424 46969424 T A SYT15 Missense_Mutation p.I13F 0.78 tolerated(0.09) benign(0.014) TCGA-ER-A19C-06 10 61835300 61835300 G A ANK3 Missense_Mutation p.S1780L 0.56 benign(0.011) TCGA-ER-A19C-06 10 70502219 70502219 C T CCAR1 Silent p.S137S 0.60 TCGA-ER-A19C-06 11 101929619 101929619 C T C11orf70 Silent p.F67F 0.70 TCGA-ER-A19C-06 11 107506367 107506367 G A ELMOD1 Missense_Mutation p.G99E 0.74 tolerated(0.95) possibly_damaging(0.907) TCGA-ER-A19C-06 11 117988652 117988652 G T TMPRSS4 3'UTR 0.75 TCGA-ER-A19C-06 11 123516298 123516298 G A SCN3B Silent p.F72F 0.60 TCGA-ER-A19C-06 11 2593264 2593264 C T KCNQ1 Silent p.I235I 0.72 TCGA-ER-A19C-06 11 48510479 48510479 G A OR4A47 Silent p.V45V 0.68 TCGA-ER-A19C-06 11 68192666 68192666 C T LRP5 Silent p.L1111L 0.73 TCGA-ER-A19C-06 11 6898649 6898649 C T OR10A4 Silent p.I257I 0.74 TCGA-ER-A19C-06 11 6913201 6913201 G A OR2D2 Silent p.F177F 0.67 TCGA-ER-A19C-06 11 73753120 73753120 G A C2CD3 Missense_Mutation p.T1880I 0.70 deleterious(0.01) possibly_damaging(0.462) TCGA-ER-A19C-06 12 7640410 7640410 C T CD163 Missense_Mutation p.G565E 0.43 tolerated(0.09) benign(0.068) TCGA-ER-A19C-06 12 81624906 81624906 G A ACSS3 Missense_Mutation p.E529K 0.34 tolerated(0.24) benign(0.002) TCGA-ER-A19C-06 13 103449154 103449154 C T KDELC1 Missense_Mutation p.G130R 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19C-06 13 52639643 52639643 G A NEK5 Missense_Mutation p.S676F 0.42 deleterious(0) probably_damaging(0.969) TCGA-ER-A19C-06 13 58298998 58298998 C T PCDH17 Missense_Mutation p.P1017L 0.34 deleterious(0) benign(0.23) TCGA-ER-A19C-06 13 72063214 72063214 C T DACH1 Missense_Mutation p.G548E 0.39 possibly_damaging(0.876) TCGA-ER-A19C-06 14 106667749 106667749 C T IGHV3-20 Silent p.G61G 0.45 TCGA-ER-A19C-06 14 24587609 24587609 G A DCAF11 Missense_Mutation p.R197Q 0.35 deleterious(0.03) probably_damaging(0.988) TCGA-ER-A19C-06 14 57268611 57268611 G A OTX2 Missense_Mutation p.L246F 0.38 tolerated(0.08) probably_damaging(0.954) TCGA-ER-A19C-06 14 91338376 91338376 G A RPS6KA5 3'UTR 0.40 TCGA-ER-A19C-06 14 94158220 94158220 G A UNC79 Silent p.A2328A 0.42 TCGA-ER-A19C-06 15 20642661 20642661 T C HERC2P3 RNA 0.38 TCGA-ER-A19C-06 15 25429507 25429507 C T SNORD115-8 RNA 0.57 TCGA-ER-A19C-06 15 88472404 88472404 C T NTRK3 Intron 0.21 TCGA-ER-A19C-06 15 90760690 90760690 C T SEMA4B Silent p.F59F 0.22 TCGA-ER-A19C-06 15 93492257 93492257 C T CHD2 Nonsense_Mutation p.R485* 0.60 TCGA-ER-A19C-06 16 20494476 20494476 G A ACSM2A Missense_Mutation p.A536T 0.19 deleterious(0) possibly_damaging(0.716) TCGA-ER-A19C-06 16 21209114 21209114 C T ZP2 Missense_Mutation p.E690K 0.25 tolerated_low_confidence(0.4) benign(0.011) TCGA-ER-A19C-06 16 76501288 76501288 C T CNTNAP4 Missense_Mutation p.P435L 0.77 tolerated(0.11) benign(0.012) TCGA-ER-A19C-06 16 85697143 85697143 A G GSE1 Missense_Mutation p.N856S 0.08 tolerated(0.68) benign(0.145) TCGA-ER-A19C-06 16 89849495 89849495 G A FANCA Missense_Mutation p.P496S 0.65 deleterious(0) possibly_damaging(0.641) TCGA-ER-A19C-06 16 9856896 9856896 C T GRIN2A 3'UTR 0.31 TCGA-ER-A19C-06 17 28512731 28512731 A C NSRP1 3'UTR 0.61 TCGA-ER-A19C-06 17 28512732 28512732 C T NSRP1 3'UTR 0.60 TCGA-ER-A19C-06 17 3844872 3844872 G A ATP2A3 Missense_Mutation p.S541F 0.53 tolerated(0.09) benign(0.056) TCGA-ER-A19C-06 17 61744314 61744314 C T MAP3K3 Silent p.P163P 0.28 TCGA-ER-A19C-06 17 76510915 76510915 C T DNAH17 Missense_Mutation p.E1348K 0.41 benign(0.119) TCGA-ER-A19C-06 17 77708929 77708929 G C ENPP7 Missense_Mutation p.A163P 0.34 tolerated(0.26) possibly_damaging(0.746) TCGA-ER-A19C-06 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.29 TCGA-ER-A19C-06 19 35741440 35741440 G A LSR Missense_Mutation p.G159D 0.51 tolerated(0.07) probably_damaging(1) TCGA-ER-A19C-06 19 38782532 38782532 C T SPINT2 Silent p.A215A 0.29 TCGA-ER-A19C-06 19 4817244 4817244 G A TICAM1 Silent p.F382F 0.28 TCGA-ER-A19C-06 19 55450410 55450410 C T NLRP7 Missense_Mutation p.E593K 0.36 tolerated(0.06) benign(0.102) TCGA-ER-A19C-06 19 57325403 57325403 C T PEG3 Silent p.E1469E 0.31 TCGA-ER-A19C-06 1 151314838 151314838 G A RFX5 Missense_Mutation p.P559S 0.42 tolerated_low_confidence(0.11) benign(0.043) TCGA-ER-A19C-06 1 152082200 152082200 C T TCHH Missense_Mutation p.E1165K 0.29 unknown(0) TCGA-ER-A19C-06 1 153333147 153333147 G A S100A9 Missense_Mutation p.E60K 0.30 tolerated(0.21) benign(0.001) TCGA-ER-A19C-06 1 153636877 153636877 C G ILF2 Missense_Mutation p.Q217H 0.26 tolerated(1) benign(0.002) TCGA-ER-A19C-06 1 160766021 160766021 C T LY9 Missense_Mutation p.P15L 0.47 tolerated(0.07) probably_damaging(0.928) TCGA-ER-A19C-06 1 16577944 16577944 G A FBXO42 Missense_Mutation p.P459S 0.58 deleterious_low_confidence(0) benign(0.142) TCGA-ER-A19C-06 1 173550993 173550993 G A SLC9C2 Silent p.F265F 0.36 TCGA-ER-A19C-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.35 TCGA-ER-A19C-06 1 205814680 205814680 G A PM20D1 Missense_Mutation p.P88S 0.28 deleterious(0) probably_damaging(0.986) TCGA-ER-A19C-06 1 216371818 216371818 G A USH2A Missense_Mutation p.S1307L 0.28 benign(0.002) TCGA-ER-A19C-06 1 22965688 22965688 G A C1QA Missense_Mutation p.V176I 0.41 tolerated(0.35) benign(0.003) TCGA-ER-A19C-06 1 24201505 24201505 G A CNR2 Silent p.L201L 0.38 TCGA-ER-A19C-06 1 248685628 248685628 G A OR2G6 Silent p.R227R 0.57 TCGA-ER-A19C-06 1 248845069 248845069 G T OR14I1 Silent p.I179I 0.27 TCGA-ER-A19C-06 1 55525203 55525203 G A PCSK9 Silent p.G516G 0.28 TCGA-ER-A19C-06 1 89732246 89732246 G A GBP5 Silent p.F217F 0.35 TCGA-ER-A19C-06 20 2844864 2844864 C A VPS16 Missense_Mutation p.L551I 0.10 tolerated(0.09) possibly_damaging(0.662) TCGA-ER-A19C-06 20 51870105 51870105 C T TSHZ2 Silent p.S36S 0.76 TCGA-ER-A19C-06 21 41385240 41385240 C T DSCAM Silent p.R1920R 0.33 TCGA-ER-A19C-06 22 22707607 22707607 C T IGLV5-48 Silent p.P65P 0.30 TCGA-ER-A19C-06 22 26294364 26294364 G A MYO18B Missense_Mutation p.D1587N 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A19C-06 22 31289464 31289464 G A OSBP2 Missense_Mutation p.E669K 0.32 tolerated(0.52) benign(0.192) TCGA-ER-A19C-06 22 46318701 46318701 T C WNT7B 3'UTR 0.38 TCGA-ER-A19C-06 2 100903486 100903486 C T LONRF2 Missense_Mutation p.D654N 0.85 tolerated(0.47) possibly_damaging(0.845) TCGA-ER-A19C-06 2 167138193 167138193 C T SCN9A Silent p.V689V 0.53 TCGA-ER-A19C-06 2 189849645 189849645 C T COL3A1 Missense_Mutation p.P80L 0.53 unknown(0) TCGA-ER-A19C-06 2 20840906 20840906 T C HS1BP3 Missense_Mutation p.Y78C 0.52 deleterious(0) probably_damaging(0.995) TCGA-ER-A19C-06 2 231157400 231157400 G T SP140 Missense_Mutation p.W622L 0.67 tolerated(0.1) probably_damaging(0.912) TCGA-ER-A19C-06 2 234526865 234526865 G A UGT1A8 Missense_Mutation p.G171E 0.56 deleterious(0.01) possibly_damaging(0.772) TCGA-ER-A19C-06 2 242357398 242357398 G T FARP2 Silent p.S215S 0.14 TCGA-ER-A19C-06 3 121973101 121973101 C T CASR Missense_Mutation p.P22L 0.42 deleterious(0.01) probably_damaging(0.94) TCGA-ER-A19C-06 3 150396229 150396229 G A FAM194A Silent p.I408I 0.40 TCGA-ER-A19C-06 3 186303137 186303137 C T DNAJB11 Silent p.I339I 0.32 TCGA-ER-A19C-06 3 3139902 3139902 C T IL5RA Missense_Mutation p.R147K 0.33 tolerated(1) benign(0.022) TCGA-ER-A19C-06 3 38628959 38628959 T G SCN5A Missense_Mutation p.I790L 0.36 tolerated(0.09) benign(0.055) TCGA-ER-A19C-06 3 51864457 51864457 G A IQCF3 Silent p.K35K 0.23 TCGA-ER-A19C-06 3 96706248 96706248 A G EPHA6 Silent p.P175P 0.42 TCGA-ER-A19C-06 4 162459387 162459387 C T FSTL5 Missense_Mutation p.A415T 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19C-06 4 175897512 175897512 C T ADAM29 Missense_Mutation p.P279L 0.37 tolerated(0.68) benign(0.036) TCGA-ER-A19C-06 4 24521913 24521913 A T MIR573 RNA 0.33 TCGA-ER-A19C-06 4 41750451 41750451 G A PHOX2B Silent p.S59S 0.36 TCGA-ER-A19C-06 4 48038280 48038280 G A NIPAL1 3'UTR 0.53 TCGA-ER-A19C-06 4 70361499 70361499 C T UGT2B4 Silent p.L27L 0.34 TCGA-ER-A19C-06 4 74310728 74310728 T C AFP Silent p.S244S 0.29 TCGA-ER-A19C-06 4 90872795 90872795 G A MMRN1 Missense_Mutation p.G1053E 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A19C-06 5 13823435 13823435 G A DNAH5 Silent p.L2208L 0.36 TCGA-ER-A19C-06 5 145379788 145379788 C T SH3RF2 Silent p.I182I 0.32 TCGA-ER-A19C-06 5 170222403 170222403 C T GABRP Silent p.S144S 0.43 TCGA-ER-A19C-06 5 178369780 178369780 C T ZNF454 5'UTR 0.41 TCGA-ER-A19C-06 5 35991310 35991310 G A UGT3A1 Silent p.A11A 0.30 TCGA-ER-A19C-06 5 39285278 39285278 G A C9 3'UTR 0.32 TCGA-ER-A19C-06 5 39285309 39285309 C T C9 Missense_Mutation p.E558K 0.43 deleterious_low_confidence(0) benign(0) TCGA-ER-A19C-06 5 5191880 5191880 C T ADAMTS16 Silent p.T430T 0.42 TCGA-ER-A19C-06 5 74324725 74324725 G C GCNT4 Missense_Mutation p.P380A 0.51 tolerated(0.13) probably_damaging(1) TCGA-ER-A19C-06 5 87498782 87498782 G C TMEM161B Missense_Mutation p.P304R 0.38 tolerated(0.08) probably_damaging(0.983) TCGA-ER-A19C-06 5 96432554 96432554 C T LIX1 Missense_Mutation p.G174E 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A19C-06 6 106554799 106554799 G A PRDM1 Missense_Mutation p.R639K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19C-06 6 117714445 117714445 C T ROS1 Missense_Mutation p.E402K 0.33 tolerated(0.13) benign(0.169) TCGA-ER-A19C-06 6 152746629 152746629 T C SYNE1 Silent p.Q1718Q 0.27 TCGA-ER-A19C-06 6 33284312 33284312 G A ZBTB22 Missense_Mutation p.L128F 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A19C-06 6 52052467 52052467 G A IL17A Missense_Mutation p.G32R 0.36 tolerated(0.09) benign(0.02) TCGA-ER-A19C-06 6 90577612 90577614 GAA - CASP8AP2 RNA 0.47 TCGA-ER-A19C-06 7 133948700 133948700 C T LRGUK Silent p.L817L 0.15 TCGA-ER-A19C-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-ER-A19C-06 7 143657992 143657992 G A OR2F1 Missense_Mutation p.G310E 0.36 tolerated(0.27) benign(0.005) TCGA-ER-A19C-06 7 23809348 23809348 C T STK31 Silent p.V562V 0.36 TCGA-ER-A19C-06 7 55268925 55268925 C T EGFR Silent p.F997F 0.38 TCGA-ER-A19C-06 9 121971195 121971195 C T BRINP1 Missense_Mutation p.R316H 0.58 deleterious(0.03) benign(0.001) TCGA-ER-A19C-06 9 140952241 140952241 G A CACNA1B Silent p.K1342K 0.71 TCGA-ER-A19C-06 9 17795553 17795553 G A SH3GL2 Missense_Mutation p.D291N 0.57 tolerated(0.14) possibly_damaging(0.776) TCGA-ER-A19C-06 9 34996725 34996725 C T DNAJB5 Silent p.I339I 0.57 TCGA-ER-A19C-06 9 8460523 8460523 G A PTPRD Silent p.L1255L 0.54 TCGA-ER-A19C-06 X 34961618 34961618 C T FAM47B Missense_Mutation p.R224C 0.77 tolerated(0.21) benign(0.002) TCGA-ER-A19C-06 X 37029045 37029045 C T FAM47C Silent p.D854D 0.74 TCGA-ER-A19D-06 10 102089771 102089771 G A PKD2L1 Silent p.S30S 0.35 TCGA-ER-A19D-06 10 105173056 105173056 G A PDCD11 Missense_Mutation p.D388N 0.76 tolerated(0.09) benign(0.048) TCGA-ER-A19D-06 10 105206898 105206898 G A CALHM2 3'UTR 0.83 TCGA-ER-A19D-06 10 123276957 123276957 C T FGFR2 Intron 0.70 TCGA-ER-A19D-06 10 21097567 21097567 C T NEBL Missense_Mutation p.R878Q 0.64 tolerated(0.08) benign(0.255) TCGA-ER-A19D-06 10 21120485 21120485 C T NEBL Missense_Mutation p.E493K 0.74 deleterious(0.03) possibly_damaging(0.688) TCGA-ER-A19D-06 10 24831852 24831852 G A KIAA1217 Nonsense_Mutation p.W1218* 0.72 TCGA-ER-A19D-06 10 30315473 30315473 C T KIAA1462 Missense_Mutation p.E1202K 0.70 tolerated(0.49) benign(0.172) TCGA-ER-A19D-06 10 30315749 30315749 G A KIAA1462 Nonsense_Mutation p.Q1110* 0.76 TCGA-ER-A19D-06 10 50594829 50594829 C T DRGX Missense_Mutation p.E109K 0.74 tolerated(0.07) benign(0.25) TCGA-ER-A19D-06 10 5498571 5498571 C T NET1 Missense_Mutation p.R469C 0.73 deleterious(0.04) probably_damaging(0.987) TCGA-ER-A19D-06 10 61835611 61835611 C T ANK3 Silent p.K1676K 0.76 TCGA-ER-A19D-06 10 69902729 69902729 C T MYPN Missense_Mutation p.S312F 0.75 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 10 70925797 70925797 G A VPS26A Splice_Site p.X220_splice 0.63 TCGA-ER-A19D-06 10 74813221 74813221 G C P4HA1 Silent p.G197G 0.28 TCGA-ER-A19D-06 10 95848877 95848877 G A PLCE1 Intron 0.72 TCGA-ER-A19D-06 10 99003878 99003878 G A ARHGAP19 Silent p.S344S 0.31 TCGA-ER-A19D-06 11 104971399 104971399 C T CARD17 Missense_Mutation p.E39K 0.07 deleterious(0.03) probably_damaging(0.956) TCGA-ER-A19D-06 11 113286293 113286293 G A DRD2 Silent p.V191V 0.31 TCGA-ER-A19D-06 11 116729203 116729203 G A SIK3 Missense_Mutation p.S887L 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ER-A19D-06 11 124794749 124794749 A T HEPACAM Missense_Mutation p.L101H 0.07 deleterious(0) probably_damaging(0.976) TCGA-ER-A19D-06 11 128807690 128807690 G A TP53AIP1 Silent p.S8S 0.67 TCGA-ER-A19D-06 11 1471927 1471927 C T BRSK2 Silent p.S512S 0.13 TCGA-ER-A19D-06 11 17531373 17531373 G A USH1C Missense_Mutation p.P515S 0.65 tolerated_low_confidence(0.2) benign(0.15) TCGA-ER-A19D-06 11 2443397 2443397 C T TRPM5 Missense_Mutation p.G91E 0.08 deleterious(0) possibly_damaging(0.654) TCGA-ER-A19D-06 11 5067811 5067811 T C OR52J3 Missense_Mutation p.I19T 0.76 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 11 51411726 51411726 T A OR4A5 Missense_Mutation p.T224S 0.75 tolerated_low_confidence(0.2) benign(0.158) TCGA-ER-A19D-06 11 5364610 5364610 C T OR51B5 Missense_Mutation p.E49K 0.41 tolerated(0.12) benign(0.001) TCGA-ER-A19D-06 11 55595525 55595525 C T OR5L2 Silent p.F277F 0.85 TCGA-ER-A19D-06 11 59132584 59132584 C T OR5AN1 Missense_Mutation p.S218F 0.72 deleterious(0.01) probably_damaging(1) TCGA-ER-A19D-06 11 6007408 6007408 G A OR52L1 Silent p.A251A 0.68 TCGA-ER-A19D-06 11 62327658 62327658 G A EEF1G Silent p.F346F 0.24 TCGA-ER-A19D-06 11 63680420 63680420 C T RCOR2 Splice_Site p.X298_splice 0.71 TCGA-ER-A19D-06 11 64419053 64419053 G A NRXN2 Silent p.I864I 0.12 TCGA-ER-A19D-06 11 64900492 64900492 G A SYVN1 Silent p.T93T 0.72 TCGA-ER-A19D-06 11 66475050 66475050 G A SPTBN2 Silent p.N530N 0.76 TCGA-ER-A19D-06 11 66638662 66638662 G A PC Missense_Mutation p.P165L 0.68 deleterious(0) possibly_damaging(0.809) TCGA-ER-A19D-06 11 77383160 77383160 G A RSF1 Silent p.S1226S 0.07 TCGA-ER-A19D-06 11 83344290 83344290 G A DLG2 Missense_Mutation p.S635F 0.39 deleterious(0) possibly_damaging(0.888) TCGA-ER-A19D-06 11 86131005 86131014 TAAATAGAGT - CCDC81 Frame_Shift_Del p.V576Afs*15 0.57 TCGA-ER-A19D-06 11 92507292 92507292 C T FAT3 Silent p.S1427S 0.33 TCGA-ER-A19D-06 11 92564905 92564905 C T FAT3 Missense_Mutation p.S3200L 0.06 benign(0.407) TCGA-ER-A19D-06 11 94231575 94231575 C T ANKRD49 Silent p.Y199Y 0.72 TCGA-ER-A19D-06 12 109017681 109017681 G A SELPLG Nonsense_Mutation p.Q151* 0.25 TCGA-ER-A19D-06 12 109623461 109623461 C T ACACB Silent p.P632P 0.55 TCGA-ER-A19D-06 12 111345145 111345145 C T CCDC63 Silent p.P519P 0.37 TCGA-ER-A19D-06 12 112235912 112235912 G A ALDH2 Missense_Mutation p.G372S 0.09 tolerated(0.33) benign(0.043) TCGA-ER-A19D-06 12 123749768 123749768 C A CDK2AP1 Missense_Mutation p.K85N 0.33 deleterious(0) possibly_damaging(0.88) TCGA-ER-A19D-06 12 124272420 124272420 C T DNAH10 Silent p.A436A 0.27 TCGA-ER-A19D-06 12 132626121 132626121 G A DDX51 Silent p.I342I 0.52 TCGA-ER-A19D-06 12 14578076 14578076 G A ATF7IP Silent p.T409T 0.19 TCGA-ER-A19D-06 12 14849181 14849181 G C GUCY2C Missense_Mutation p.R68G 0.25 tolerated(0.21) possibly_damaging(0.624) TCGA-ER-A19D-06 12 18435178 18435178 G A PIK3C2G Missense_Mutation p.E55K 0.24 tolerated_low_confidence(0.2) benign(0.002) TCGA-ER-A19D-06 12 21196278 21196278 G A SLCO1B7 Silent p.R199R 0.28 TCGA-ER-A19D-06 12 21472326 21472326 C T SLCO1A2 Intron 0.54 TCGA-ER-A19D-06 12 48376722 48376722 C T COL2A1 Missense_Mutation p.R701Q 0.43 benign(0.288) TCGA-ER-A19D-06 12 4919899 4919899 C T KCNA6 Missense_Mutation p.S231F 0.27 tolerated(0.26) benign(0.006) TCGA-ER-A19D-06 12 53346455 53346455 C T KRT18 Intron 0.18 TCGA-ER-A19D-06 12 56626590 56626590 G A SLC39A5 Silent p.S135S 0.41 TCGA-ER-A19D-06 12 56845221 56845221 C T MIP Missense_Mutation p.G212E 0.52 deleterious(0) probably_damaging(0.951) TCGA-ER-A19D-06 12 57111129 57111129 G A NACA Intron 0.27 TCGA-ER-A19D-06 12 57472468 57472468 C T TMEM194A Missense_Mutation p.G21R 0.59 tolerated_low_confidence(0.21) probably_damaging(0.996) TCGA-ER-A19D-06 12 6707398 6707398 G A CHD4 Missense_Mutation p.S559F 0.22 deleterious(0) probably_damaging(0.951) TCGA-ER-A19D-06 12 71032871 71032871 C T PTPRR 3'UTR 0.23 TCGA-ER-A19D-06 12 7254617 7254617 G A C1RL Missense_Mutation p.P123S 0.30 tolerated(0.06) benign(0.141) TCGA-ER-A19D-06 12 88376933 88376933 C T C12orf50 Missense_Mutation p.R389Q 0.44 deleterious(0.03) benign(0.035) TCGA-ER-A19D-06 12 88462406 88462406 G A CEP290 Missense_Mutation p.P2010S 0.57 possibly_damaging(0.453) TCGA-ER-A19D-06 12 8994057 8994057 G A A2ML1 Silent p.L391L 0.53 TCGA-ER-A19D-06 12 8994058 8994058 G A A2ML1 Missense_Mutation p.V392I 0.53 tolerated(1) benign(0.002) TCGA-ER-A19D-06 13 103518432 103518432 C T ERCC5 Intron 0.31 TCGA-ER-A19D-06 13 114307750 114307750 C T ATP4B Splice_Site p.X81_splice 0.42 TCGA-ER-A19D-06 13 33635527 33635527 C T KL Missense_Mutation p.P771S 0.31 deleterious(0.02) probably_damaging(1) TCGA-ER-A19D-06 13 37269359 37269359 C T SERTM1 Silent p.F48F 0.49 TCGA-ER-A19D-06 13 39262547 39262547 A G FREM2 Missense_Mutation p.I356V 0.28 tolerated(0.64) benign(0.002) TCGA-ER-A19D-06 13 49860415 49860415 G A CDADC1 Missense_Mutation p.E490K 0.50 deleterious_low_confidence(0.03) benign(0.092) TCGA-ER-A19D-06 13 52603949 52603949 C T UTP14C Nonsense_Mutation p.Q337* 0.19 TCGA-ER-A19D-06 13 86369802 86369802 C T SLITRK6 Missense_Mutation p.G281E 0.17 tolerated(0.33) possibly_damaging(0.656) TCGA-ER-A19D-06 13 86369803 86369803 C T SLITRK6 Missense_Mutation p.G281R 0.17 tolerated(0.19) possibly_damaging(0.758) TCGA-ER-A19D-06 13 95813473 95813473 G A ABCC4 Missense_Mutation p.P809S 0.60 tolerated(0.15) possibly_damaging(0.817) TCGA-ER-A19D-06 14 105418350 105418350 C T AHNAK2 Silent p.E1146E 0.28 TCGA-ER-A19D-06 14 106725222 106725222 C T IGHV3-23 Silent p.T110T 0.13 TCGA-ER-A19D-06 14 107034897 107034897 C T IGHV5-51 Silent p.G61G 0.65 TCGA-ER-A19D-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.06 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ER-A19D-06 14 20612005 20612005 C T OR4N5 Silent p.I37I 0.47 TCGA-ER-A19D-06 14 20856222 20856222 C G TEP1 Missense_Mutation p.K842N 0.53 deleterious(0.01) benign(0.317) TCGA-ER-A19D-06 14 23070653 23070653 C T ABHD4 Silent p.I35I 0.28 TCGA-ER-A19D-06 14 51227046 51227046 G A NIN Missense_Mutation p.T643I 0.29 deleterious(0.01) possibly_damaging(0.894) TCGA-ER-A19D-06 14 53525280 53525280 G A DDHD1 Missense_Mutation p.P636L 0.26 deleterious(0) probably_damaging(0.966) TCGA-ER-A19D-06 14 53525281 53525281 G A DDHD1 Missense_Mutation p.P636S 0.25 deleterious(0.02) probably_damaging(0.966) TCGA-ER-A19D-06 14 64692153 64692153 C T SYNE2 Missense_Mutation p.S6878F 0.22 probably_damaging(1) TCGA-ER-A19D-06 14 70713840 70713840 C T ADAM21P1 RNA 0.27 TCGA-ER-A19D-06 14 70924754 70924754 G A ADAM21 Missense_Mutation p.V180I 0.09 tolerated(1) benign(0) TCGA-ER-A19D-06 14 73029208 73029208 G A RGS6 3'Flank 0.27 TCGA-ER-A19D-06 14 77732602 77732602 C T NGB 3'UTR 0.18 TCGA-ER-A19D-06 14 77894796 77894796 G A VIPAS39 Missense_Mutation p.R460C 0.44 deleterious(0.02) possibly_damaging(0.625) TCGA-ER-A19D-06 14 92268739 92268739 G A TC2N Nonsense_Mutation p.R110* 0.22 TCGA-ER-A19D-06 14 93154591 93154591 C T RIN3 Silent p.F984F 0.46 TCGA-ER-A19D-06 15 23811889 23811889 G A MKRN3 Silent p.E320E 0.48 TCGA-ER-A19D-06 15 24921168 24921168 C T NPAP1 Missense_Mutation p.R52C 0.20 deleterious(0.01) possibly_damaging(0.835) TCGA-ER-A19D-06 15 25349764 25349764 C T SNORD116-30 5'Flank 0.35 TCGA-ER-A19D-06 15 25442572 25442572 G A SNORD115-14 3'Flank 0.19 TCGA-ER-A19D-06 15 38792333 38792333 C T RASGRP1 Missense_Mutation p.G564E 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 15 41188270 41188270 C T VPS18 Silent p.L76L 0.48 TCGA-ER-A19D-06 15 48539583 48539583 G A SLC12A1 Missense_Mutation p.G537E 0.48 deleterious(0.01) probably_damaging(1) TCGA-ER-A19D-06 15 48782256 48782256 G A FBN1 Silent p.C958C 0.43 TCGA-ER-A19D-06 15 48807600 48807600 G A FBN1 Silent p.L484L 0.68 TCGA-ER-A19D-06 15 49659751 49659751 C T FAM227B Missense_Mutation p.G389S 0.58 tolerated(0.09) possibly_damaging(0.905) TCGA-ER-A19D-06 15 51772994 51772994 G A DMXL2 Silent p.S2103S 0.48 TCGA-ER-A19D-06 15 59784513 59784513 G A FAM81A Missense_Mutation p.G113E 0.27 tolerated(0.37) probably_damaging(1) TCGA-ER-A19D-06 15 65491300 65491300 C T CILP Missense_Mutation p.D442N 0.27 tolerated(0.07) probably_damaging(0.995) TCGA-ER-A19D-06 15 75042580 75042580 G A CYP1A2 Silent p.K167K 0.31 TCGA-ER-A19D-06 15 75094397 75094397 C T CSK Silent p.S381S 0.25 TCGA-ER-A19D-06 15 79341874 79341874 G T RASGRF1 Silent p.P196P 0.52 TCGA-ER-A19D-06 15 81591938 81591938 C T IL16 Silent p.T757T 0.20 TCGA-ER-A19D-06 15 81591939 81591939 C T IL16 Missense_Mutation p.P758S 0.19 tolerated(0.38) benign(0.004) TCGA-ER-A19D-06 15 89873432 89873432 G A POLG Silent p.I245I 0.61 TCGA-ER-A19D-06 15 90270552 90270552 C T WDR93 Missense_Mutation p.P349S 0.11 tolerated(0.53) benign(0.384) TCGA-ER-A19D-06 16 11444533 11444533 C T RMI2 Silent p.A110A 0.11 TCGA-ER-A19D-06 16 1260630 1260630 C T CACNA1H Silent p.F1339F 0.38 TCGA-ER-A19D-06 16 15045785 15045785 C G NPIPA1 Nonsense_Mutation p.S319* 0.16 TCGA-ER-A19D-06 16 23707279 23707279 C T ERN2 Missense_Mutation p.G564R 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 16 29825857 29825857 C T PRRT2 Silent p.A361A 0.27 TCGA-ER-A19D-06 16 30740755 30740755 C T SRCAP Missense_Mutation p.P1997S 0.43 benign(0.398) TCGA-ER-A19D-06 16 30977153 30977153 C T SETD1A Missense_Mutation p.P651S 0.35 possibly_damaging(0.857) TCGA-ER-A19D-06 16 4463325 4463325 G A CORO7 Silent p.F47F 0.64 TCGA-ER-A19D-06 16 46782006 46782006 C T MYLK3 Missense_Mutation p.E34K 0.39 deleterious(0) probably_damaging(0.911) TCGA-ER-A19D-06 16 50338390 50338390 C T ADCY7 Silent p.P496P 0.40 TCGA-ER-A19D-06 16 5056031 5056031 C T SEC14L5 Silent p.F473F 0.41 TCGA-ER-A19D-06 16 50744993 50744993 C T NOD2 Missense_Mutation p.R391C 0.47 tolerated(0.08) benign(0.027) TCGA-ER-A19D-06 16 51171098 51171098 C T SALL1 Missense_Mutation p.M1300I 0.29 tolerated(0.39) benign(0.003) TCGA-ER-A19D-06 16 58074457 58074457 G A MMP15 Silent p.L255L 0.40 TCGA-ER-A19D-06 16 65397140 65397140 G A LINC00922 RNA 0.37 TCGA-ER-A19D-06 16 68217229 68217229 G A NFATC3 Silent p.K686K 0.36 TCGA-ER-A19D-06 16 706315 706315 C G WDR90 Silent p.P660P 0.51 TCGA-ER-A19D-06 16 70913595 70913595 G A HYDIN Missense_Mutation p.S3427F 0.19 probably_damaging(0.919) TCGA-ER-A19D-06 16 71004570 71004570 C T HYDIN Silent p.L1824L 0.30 TCGA-ER-A19D-06 16 71015463 71015463 G A HYDIN Silent p.I1447I 0.18 TCGA-ER-A19D-06 16 737679 737679 G A WDR24 Missense_Mutation p.S181F 0.49 deleterious(0) possibly_damaging(0.812) TCGA-ER-A19D-06 16 75513664 75513664 G A CHST6 Silent p.L21L 0.32 TCGA-ER-A19D-06 16 76482688 76482688 C T CNTNAP4 Missense_Mutation p.S231F 0.15 tolerated(0.1) benign(0.17) TCGA-ER-A19D-06 16 81078592 81078592 C T ATMIN 3'UTR 0.39 TCGA-ER-A19D-06 16 81164149 81164149 C T PKD1L2 RNA 0.47 TCGA-ER-A19D-06 16 84529504 84529504 C T TLDC1 Missense_Mutation p.A57T 0.36 tolerated(0.08) possibly_damaging(0.492) TCGA-ER-A19D-06 17 10399285 10399285 A G MYH1 Silent p.V1717V 0.30 TCGA-ER-A19D-06 17 10401165 10401165 G A MYH1 Silent p.S1417S 0.29 TCGA-ER-A19D-06 17 10432283 10432283 C T MYH2 Silent p.L1156L 0.29 TCGA-ER-A19D-06 17 11896178 11896178 T G ZNF18 5'UTR 0.29 TCGA-ER-A19D-06 17 12656451 12656451 G A MYOCD Missense_Mutation p.E616K 0.30 tolerated(0.21) possibly_damaging(0.447) TCGA-ER-A19D-06 17 16593801 16593801 C T CCDC144A Silent p.V29V 0.60 TCGA-ER-A19D-06 17 17398703 17398703 C T RASD1 Missense_Mutation p.M194I 0.35 tolerated(0.12) benign(0.038) TCGA-ER-A19D-06 17 26370206 26370206 C T NLK Missense_Mutation p.P103S 0.43 tolerated(0.08) possibly_damaging(0.857) TCGA-ER-A19D-06 17 26861510 26861510 G A FOXN1 Nonsense_Mutation p.W363* 0.24 TCGA-ER-A19D-06 17 30222019 30222019 A C UTP6 Missense_Mutation p.N63K 0.36 deleterious(0.01) benign(0.279) TCGA-ER-A19D-06 17 32483265 32483265 C T ASIC2 Missense_Mutation p.G96D 0.55 tolerated(0.37) benign(0.04) TCGA-ER-A19D-06 17 3301561 3301561 G A OR1E1 Silent p.L48L 0.40 TCGA-ER-A19D-06 17 34072167 34072167 C T GAS2L2 Silent p.R783R 0.22 TCGA-ER-A19D-06 17 36720422 36720422 C T SRCIN1 Missense_Mutation p.R158K 0.27 deleterious(0) probably_damaging(0.995) TCGA-ER-A19D-06 17 37186539 37186539 G A CTD-2206N4.2 5'Flank 0.17 TCGA-ER-A19D-06 17 38065230 38065230 G A GSDMB Silent p.F214F 0.48 TCGA-ER-A19D-06 17 38430095 38430095 C T WIPF2 Missense_Mutation p.P342S 0.17 deleterious(0) probably_damaging(0.996) TCGA-ER-A19D-06 17 38711855 38711855 C T CCR7 Missense_Mutation p.M92I 0.62 deleterious(0.01) possibly_damaging(0.792) TCGA-ER-A19D-06 17 38928008 38928008 C T KRT26 Missense_Mutation p.E120K 0.23 tolerated(0.07) benign(0.015) TCGA-ER-A19D-06 17 39672217 39672217 G A KRT15 Nonsense_Mutation p.Q316* 0.27 TCGA-ER-A19D-06 17 4927149 4927149 C T KIF1C Silent p.P1005P 0.49 TCGA-ER-A19D-06 17 5463221 5463221 G A NLRP1 Silent p.S265S 0.25 TCGA-ER-A19D-06 17 56386440 56386440 C T BZRAP1 Missense_Mutation p.G1398E 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-ER-A19D-06 17 56700313 56700313 G A TEX14 Silent p.I104I 0.48 TCGA-ER-A19D-06 17 60060325 60060325 C T MED13 Silent p.R1013R 0.23 TCGA-ER-A19D-06 17 60351221 60351221 C T TBC1D3P2 RNA 0.53 TCGA-ER-A19D-06 17 63156360 63156360 A G RGS9 Missense_Mutation p.N72S 0.55 tolerated(0.1) benign(0.064) TCGA-ER-A19D-06 17 6930979 6930979 G A BCL6B 3'UTR 0.19 TCGA-ER-A19D-06 17 72759590 72759590 G A SLC9A3R1 Missense_Mutation p.V230M 0.64 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 17 73887946 73887946 G A TRIM65 Silent p.P311P 0.20 TCGA-ER-A19D-06 17 74020174 74020174 G A EVPL Silent p.L42L 0.35 TCGA-ER-A19D-06 17 76799935 76799935 G A USP36 Missense_Mutation p.S781L 0.53 tolerated(0.22) benign(0.023) TCGA-ER-A19D-06 17 78078786 78078786 C T GAA Missense_Mutation p.P134L 0.21 deleterious(0.01) benign(0.091) TCGA-ER-A19D-06 17 78090819 78090819 G A GAA Missense_Mutation p.E748K 0.19 tolerated(0.55) benign(0.01) TCGA-ER-A19D-06 17 79429066 79429066 C T RP11-1055B8.7 Silent p.P2459P 0.36 TCGA-ER-A19D-06 18 21396405 21396405 G A LAMA3 Missense_Mutation p.G701R 0.43 probably_damaging(1) TCGA-ER-A19D-06 18 25573486 25573486 G A CDH2 Missense_Mutation p.P379L 0.52 deleterious(0) probably_damaging(0.924) TCGA-ER-A19D-06 18 28610971 28610971 C T DSC3 Missense_Mutation p.E108K 0.43 tolerated(0.94) benign(0.052) TCGA-ER-A19D-06 18 28989470 28989470 G A DSG4 Silent p.L663L 0.30 TCGA-ER-A19D-06 18 29454427 29454427 G A TRAPPC8 Intron 0.21 TCGA-ER-A19D-06 18 30913285 30913285 A G CCDC178 Silent p.H244H 0.33 TCGA-ER-A19D-06 18 31326518 31326518 G A ASXL3 Missense_Mutation p.G2236S 0.59 probably_damaging(1) TCGA-ER-A19D-06 18 40850574 40850574 C T SYT4 Missense_Mutation p.R337K 0.47 deleterious(0.01) benign(0.398) TCGA-ER-A19D-06 18 45566986 45566986 C T ZBTB7C Missense_Mutation p.D165N 0.25 tolerated(0.22) benign(0.369) TCGA-ER-A19D-06 18 47506853 47506853 C T MYO5B Silent p.A339A 0.26 TCGA-ER-A19D-06 18 48703834 48703834 G A MEX3C Silent p.A289A 0.26 TCGA-ER-A19D-06 18 48703835 48703835 G A MEX3C Missense_Mutation p.A289V 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-ER-A19D-06 18 50961561 50961561 G A DCC Missense_Mutation p.D1071N 0.50 deleterious(0.01) benign(0.012) TCGA-ER-A19D-06 18 66542000 66542000 T G CCDC102B Missense_Mutation p.V344G 0.64 deleterious(0.03) possibly_damaging(0.668) TCGA-ER-A19D-06 18 73000620 73000620 G A TSHZ1 3'UTR 0.50 TCGA-ER-A19D-06 18 73000621 73000621 G A TSHZ1 3'UTR 0.49 TCGA-ER-A19D-06 18 77474843 77474843 C T CTDP1 Silent p.S461S 0.59 TCGA-ER-A19D-06 19 10107173 10107173 G A COL5A3 Missense_Mutation p.S453F 0.20 unknown(0) TCGA-ER-A19D-06 19 11352739 11352739 G A DOCK6 Missense_Mutation p.A542V 0.64 tolerated(1) benign(0.001) TCGA-ER-A19D-06 19 12918083 12918083 T G RNASEH2A Missense_Mutation p.F88C 0.28 tolerated(0.1) probably_damaging(0.921) TCGA-ER-A19D-06 19 12975980 12975980 C T MAST1 Silent p.F542F 0.29 TCGA-ER-A19D-06 19 13988138 13988138 C T NANOS3 Missense_Mutation p.P26S 0.58 tolerated(0.19) benign(0.069) TCGA-ER-A19D-06 19 15350537 15350537 G A BRD4 Silent p.S1126S 0.24 TCGA-ER-A19D-06 19 15997107 15997107 C T CYP4F2 Silent p.G310G 0.26 TCGA-ER-A19D-06 19 16899909 16899909 G A NWD1 Missense_Mutation p.D950N 0.33 deleterious(0.04) benign(0.347) TCGA-ER-A19D-06 19 17306107 17306107 C T MYO9B Missense_Mutation p.P1291S 0.43 deleterious(0.04) possibly_damaging(0.834) TCGA-ER-A19D-06 19 17476972 17476972 A G PLVAP Silent p.A134A 0.26 TCGA-ER-A19D-06 19 17783262 17783262 C T UNC13A Nonsense_Mutation p.W65* 0.51 TCGA-ER-A19D-06 19 1783186 1783186 G A ATP8B3 Silent p.R1248R 0.23 TCGA-ER-A19D-06 19 19010397 19010397 G A COPE 3'UTR 0.33 TCGA-ER-A19D-06 19 19408023 19408023 G A SUGP1 Missense_Mutation p.P340S 0.49 tolerated(0.17) benign(0.004) TCGA-ER-A19D-06 19 22363414 22363414 C T ZNF676 Missense_Mutation p.G369R 0.28 deleterious(0) benign(0.091) TCGA-ER-A19D-06 19 22939518 22939518 C T ZNF99 3'Flank 0.25 TCGA-ER-A19D-06 19 22940616 22940616 G A ZNF99 Missense_Mutation p.H699Y 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A19D-06 19 2877606 2877606 C T ZNF556 Missense_Mutation p.S217F 0.70 deleterious(0) probably_damaging(0.979) TCGA-ER-A19D-06 19 326591 326591 G A MIER2 Silent p.F167F 0.38 TCGA-ER-A19D-06 19 34983992 34983992 T G WTIP Missense_Mutation p.C274G 0.47 deleterious(0) probably_damaging(0.997) TCGA-ER-A19D-06 19 35512625 35512625 C T GRAMD1A Missense_Mutation p.S537F 0.41 tolerated(0.63) benign(0.081) TCGA-ER-A19D-06 19 3759875 3759875 C T APBA3 Missense_Mutation p.E130K 0.21 tolerated(0.31) benign(0.002) TCGA-ER-A19D-06 19 3834962 3834962 G A ZFR2 Missense_Mutation p.P25S 0.22 tolerated(1) benign(0.005) TCGA-ER-A19D-06 19 39334494 39334494 G A HNRNPL Missense_Mutation p.L290F 0.56 deleterious(0) probably_damaging(0.995) TCGA-ER-A19D-06 19 39597640 39597640 C T PAPL Silent p.A389A 0.14 TCGA-ER-A19D-06 19 3982420 3982420 G A EEF2 Silent p.I205I 0.44 TCGA-ER-A19D-06 19 40360893 40360893 T G FCGBP Missense_Mutation p.Q5172P 0.28 probably_damaging(0.968) TCGA-ER-A19D-06 19 40486287 40486287 G A PSMC4 Missense_Mutation p.R338H 0.28 deleterious(0.04) possibly_damaging(0.886) TCGA-ER-A19D-06 19 40886829 40886829 C T HIPK4 Missense_Mutation p.E357K 0.29 tolerated(0.15) probably_damaging(0.942) TCGA-ER-A19D-06 19 40929200 40929200 G A SERTAD1 Missense_Mutation p.A85V 0.35 tolerated(0.33) benign(0.002) TCGA-ER-A19D-06 19 41062007 41062007 G A SPTBN4 Missense_Mutation p.R1701Q 0.51 deleterious(0.01) possibly_damaging(0.826) TCGA-ER-A19D-06 19 4171723 4171723 C T CREB3L3 Silent p.A381A 0.23 TCGA-ER-A19D-06 19 4219741 4219741 G A ANKRD24 Missense_Mutation p.E1053K 0.29 deleterious(0) possibly_damaging(0.756) TCGA-ER-A19D-06 19 44537123 44537123 G A ZNF222 Silent p.K472K 0.20 TCGA-ER-A19D-06 19 44680330 44680330 A G ZNF226 Silent p.E305E 0.27 TCGA-ER-A19D-06 19 44680334 44680334 C A ZNF226 Missense_Mutation p.L307I 0.25 tolerated(0.16) benign(0.045) TCGA-ER-A19D-06 19 4793180 4793180 C T FEM1A Silent p.F438F 0.31 TCGA-ER-A19D-06 19 48977503 48977503 C T CYTH2 Silent p.V204V 0.41 TCGA-ER-A19D-06 19 48977504 48977504 C T CYTH2 Missense_Mutation p.R205W 0.42 tolerated(0.06) benign(0.022) TCGA-ER-A19D-06 19 50158054 50158054 C T SCAF1 Missense_Mutation p.P1182L 0.57 possibly_damaging(0.851) TCGA-ER-A19D-06 19 50775127 50775127 C T MYH14 Missense_Mutation p.R1065C 0.19 deleterious(0) probably_damaging(0.993) TCGA-ER-A19D-06 19 51133395 51133395 C T SYT3 Silent p.Q236Q 0.47 TCGA-ER-A19D-06 19 52327535 52327535 C T FPR3 Silent p.F178F 0.41 TCGA-ER-A19D-06 19 52618800 52618800 A G ZNF616 Silent p.H539H 0.49 TCGA-ER-A19D-06 19 53669139 53669139 C T ZNF665 Missense_Mutation p.G202R 0.52 tolerated(0.46) possibly_damaging(0.878) TCGA-ER-A19D-06 19 53762553 53762553 C T VN1R2 Missense_Mutation p.P309S 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-ER-A19D-06 19 53855689 53855689 C T ZNF845 Silent p.V587V 0.32 TCGA-ER-A19D-06 19 54313652 54313652 C T NLRP12 Missense_Mutation p.G421R 0.49 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 19 54782907 54782907 C T LILRB2 Missense_Mutation p.E239K 0.21 tolerated(0.19) possibly_damaging(0.672) TCGA-ER-A19D-06 19 54803632 54803632 C T LILRA3 Silent p.K64K 0.52 TCGA-ER-A19D-06 19 55106864 55106864 C T LILRA1 Silent p.L220L 0.16 TCGA-ER-A19D-06 19 55221995 55221995 C T AC098784.2 3'Flank 0.26 TCGA-ER-A19D-06 19 55508784 55508784 C T NLRP2 Silent p.P993P 0.57 TCGA-ER-A19D-06 19 55776708 55776708 G A HSPBP1 Silent p.L315L 0.24 TCGA-ER-A19D-06 19 56369277 56369277 C G NLRP4 Missense_Mutation p.S173W 0.52 deleterious(0) probably_damaging(0.993) TCGA-ER-A19D-06 19 56539572 56539572 C T NLRP5 Missense_Mutation p.P658L 0.50 tolerated(0.07) benign(0.344) TCGA-ER-A19D-06 19 57956042 57956042 G A ZNF749 Missense_Mutation p.R509Q 0.56 deleterious(0.01) unknown(0) TCGA-ER-A19D-06 19 57956043 57956043 G A ZNF749 Silent p.R509R 0.56 TCGA-ER-A19D-06 19 58772459 58772459 G A ZNF544 Missense_Mutation p.G163R 0.18 tolerated(0.27) benign(0.012) TCGA-ER-A19D-06 19 58772460 58772460 G A ZNF544 Missense_Mutation p.G163E 0.17 tolerated(0.38) benign(0.008) TCGA-ER-A19D-06 19 7518552 7518552 C T ARHGEF18 Silent p.L497L 0.18 TCGA-ER-A19D-06 19 7707104 7707104 C T STXBP2 Missense_Mutation p.R227C 0.22 deleterious(0.04) benign(0.212) TCGA-ER-A19D-06 1 114483987 114483987 C T HIPK1 Missense_Mutation p.R328C 0.18 deleterious(0) probably_damaging(0.982) TCGA-ER-A19D-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.76 deleterious(0.01) benign(0.045) TCGA-ER-A19D-06 1 11562836 11562836 C T PTCHD2 Silent p.L400L 0.38 TCGA-ER-A19D-06 1 118523996 118523996 C T SPAG17 Silent p.Q1967Q 0.13 TCGA-ER-A19D-06 1 118550790 118550790 C T SPAG17 Silent p.V1488V 0.14 TCGA-ER-A19D-06 1 150259002 150259002 C T C1orf51 Missense_Mutation p.P265L 0.17 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 1 152058665 152058665 C T TCHHL1 Missense_Mutation p.R498K 0.68 tolerated(0.13) benign(0.016) TCGA-ER-A19D-06 1 154408531 154408531 C T IL6R Silent p.F298F 0.17 TCGA-ER-A19D-06 1 155149757 155149757 G A TRIM46 Silent p.R300R 0.68 TCGA-ER-A19D-06 1 157665255 157665255 C T FCRL3 Silent p.G425G 0.17 TCGA-ER-A19D-06 1 157716517 157716517 C T FCRL2 3'UTR 0.64 TCGA-ER-A19D-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.39 deleterious(0.05) benign(0.008) TCGA-ER-A19D-06 1 159176010 159176010 G A DARC Missense_Mutation p.G263R 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-ER-A19D-06 1 159273949 159273949 C T FCER1A Missense_Mutation p.P103L 0.18 deleterious(0) probably_damaging(0.975) TCGA-ER-A19D-06 1 159828675 159828675 C T VSIG8 Missense_Mutation p.G26E 0.58 tolerated(0.11) possibly_damaging(0.857) TCGA-ER-A19D-06 1 160054431 160054431 C T KCNJ9 Missense_Mutation p.S204F 0.60 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19D-06 1 160141494 160141494 C T ATP1A4 Missense_Mutation p.P601S 0.62 deleterious(0.01) benign(0.262) TCGA-ER-A19D-06 1 161254232 161254232 C T PCP4L1 Silent p.F56F 0.68 TCGA-ER-A19D-06 1 167032862 167032862 C T GPA33 Silent p.K176K 0.11 TCGA-ER-A19D-06 1 167096059 167096059 G A DUSP27 Missense_Mutation p.G564E 0.67 tolerated(0.21) benign(0.01) TCGA-ER-A19D-06 1 167097470 167097470 G A DUSP27 Silent p.E1034E 0.59 TCGA-ER-A19D-06 1 171076868 171076868 G A FMO3 Nonsense_Mutation p.W125* 0.24 TCGA-ER-A19D-06 1 171310800 171310800 G A FMO4 Missense_Mutation p.R500Q 0.48 deleterious(0) possibly_damaging(0.902) TCGA-ER-A19D-06 1 173174541 173174541 G A TNFSF4 Intron 0.15 TCGA-ER-A19D-06 1 176998572 176998572 G A ASTN1 Intron 0.61 TCGA-ER-A19D-06 1 178411966 178411966 G A RASAL2 Missense_Mutation p.E362K 0.21 deleterious(0) probably_damaging(0.997) TCGA-ER-A19D-06 1 183155552 183155552 C T LAMC2 Missense_Mutation p.T22I 0.09 deleterious(0.02) benign(0.017) TCGA-ER-A19D-06 1 186088327 186088327 A G HMCN1 Silent p.A3951A 0.21 TCGA-ER-A19D-06 1 200559251 200559251 A G KIF14 Splice_Site p.X987_splice 0.18 TCGA-ER-A19D-06 1 203134630 203134630 C T ADORA1 Missense_Mutation p.L195F 0.14 deleterious(0.04) benign(0.096) TCGA-ER-A19D-06 1 203150327 203150327 C T CHI3L1 Missense_Mutation p.G225D 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-ER-A19D-06 1 204091084 204091084 G A SOX13 Missense_Mutation p.G278R 0.13 deleterious(0.01) possibly_damaging(0.495) TCGA-ER-A19D-06 1 205902070 205902070 C T SLC26A9 Intron 0.32 TCGA-ER-A19D-06 1 211840481 211840481 C T NEK2 Missense_Mutation p.E360K 0.61 tolerated_low_confidence(0.08) benign(0.004) TCGA-ER-A19D-06 1 211840482 211840482 C T NEK2 Silent p.K359K 0.62 TCGA-ER-A19D-06 1 227921164 227921164 C T JMJD4 Missense_Mutation p.G304D 0.55 deleterious(0) probably_damaging(0.997) TCGA-ER-A19D-06 1 227921165 227921165 C T JMJD4 Missense_Mutation p.G304S 0.57 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 1 228612576 228612576 G A HIST3H3 3'UTR 0.20 TCGA-ER-A19D-06 1 229606385 229606385 T C NUP133 Missense_Mutation p.N673S 0.69 tolerated(0.36) benign(0.178) TCGA-ER-A19D-06 1 231335968 231335968 G A TRIM67 Silent p.E446E 0.58 TCGA-ER-A19D-06 1 232650407 232650407 G A SIPA1L2 Missense_Mutation p.P227S 0.17 tolerated(0.09) benign(0.012) TCGA-ER-A19D-06 1 243716030 243716030 C T AKT3 Splice_Site p.X388_splice 0.19 TCGA-ER-A19D-06 1 2522449 2522449 C T MMEL1 Missense_Mutation p.E774K 0.35 tolerated(1) benign(0.008) TCGA-ER-A19D-06 1 28858821 28858821 C T RCC1 Missense_Mutation p.L165F 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 1 33840973 33840973 G A PHC2 Silent p.T56T 0.43 TCGA-ER-A19D-06 1 34037281 34037281 C T CSMD2 Missense_Mutation p.R2605Q 0.45 tolerated(0.2) possibly_damaging(0.746) TCGA-ER-A19D-06 1 36367133 36367133 C T AGO1 Missense_Mutation p.S360L 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 1 37282688 37282688 C T GRIK3 Silent p.K688K 0.32 TCGA-ER-A19D-06 1 40235962 40235962 G A OXCT2 Silent p.I322I 0.28 TCGA-ER-A19D-06 1 51887587 51887587 G A EPS15 Intron 0.35 TCGA-ER-A19D-06 1 57420480 57420480 G A C8B Missense_Mutation p.L138F 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19D-06 1 62190821 62190821 C T TM2D1 Missense_Mutation p.G53E 0.43 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-ER-A19D-06 1 62703930 62703930 G A KANK4 3'UTR 0.35 TCGA-ER-A19D-06 1 70541893 70541893 C T LRRC7 Missense_Mutation p.P1417L 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19D-06 1 75055424 75055424 C T C1orf173 Silent p.G689G 0.30 TCGA-ER-A19D-06 1 75707705 75707705 C T SLC44A5 Silent p.A171A 0.24 TCGA-ER-A19D-06 1 76226820 76226820 C T ACADM Missense_Mutation p.S324L 0.44 tolerated(0.09) benign(0.085) TCGA-ER-A19D-06 1 85035652 85035652 T A CTBS Missense_Mutation p.T163S 0.36 deleterious(0.03) possibly_damaging(0.612) TCGA-ER-A19D-06 1 86375686 86375686 C T COL24A1 Missense_Mutation p.G873R 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 1 86581030 86581030 G A COL24A1 Missense_Mutation p.P508L 0.26 tolerated(0.3) benign(0.151) TCGA-ER-A19D-06 20 10622123 10622123 C T JAG1 Silent p.K967K 0.55 TCGA-ER-A19D-06 20 25498389 25498389 C A NINL Missense_Mutation p.A93S 0.11 tolerated(0.06) benign(0.028) TCGA-ER-A19D-06 20 29965096 29965096 C T DEFB118 3'Flank 0.52 TCGA-ER-A19D-06 20 30038000 30038000 G A DEFB123 3'UTR 0.27 TCGA-ER-A19D-06 20 30438438 30438438 G A DUSP15 Silent p.C156C 0.29 TCGA-ER-A19D-06 20 34241641 34241641 G A RBM12 Missense_Mutation p.P535L 0.24 tolerated(0.06) benign(0.351) TCGA-ER-A19D-06 20 34568455 34568455 C T CNBD2 Silent p.A106A 0.51 TCGA-ER-A19D-06 20 44839064 44839064 C T CDH22 Missense_Mutation p.E390K 0.71 deleterious(0.01) benign(0.038) TCGA-ER-A19D-06 20 4705311 4705311 G A PRND Silent p.K38K 0.62 TCGA-ER-A19D-06 20 47990052 47990052 C T KCNB1 Missense_Mutation p.S682N 0.23 tolerated_low_confidence(0.07) benign(0.003) TCGA-ER-A19D-06 20 56078638 56078638 G A CTCFL Missense_Mutation p.S565L 0.28 tolerated(0.35) benign(0.024) TCGA-ER-A19D-06 20 57766216 57766216 C T ZNF831 Silent p.L48L 0.23 TCGA-ER-A19D-06 20 5904000 5904000 G A CHGB Missense_Mutation p.E404K 0.17 tolerated(0.15) possibly_damaging(0.859) TCGA-ER-A19D-06 20 61449889 61449889 G A COL9A3 Missense_Mutation p.G56D 0.20 deleterious(0) unknown(0) TCGA-ER-A19D-06 20 62194214 62194214 G A HELZ2 Silent p.F1987F 0.12 TCGA-ER-A19D-06 20 9498791 9498791 G A LAMP5 Missense_Mutation p.D194N 0.30 tolerated(0.18) probably_damaging(0.989) TCGA-ER-A19D-06 21 30380788 30380788 C T RWDD2B Silent p.K74K 0.35 TCGA-ER-A19D-06 21 35169762 35169762 G A ITSN1 Missense_Mutation p.E678K 0.37 tolerated(0.08) benign(0.069) TCGA-ER-A19D-06 21 43412714 43412714 T C ZBTB21 Silent p.L497L 0.46 TCGA-ER-A19D-06 21 43702515 43702515 C T ABCG1 Silent p.F240F 0.23 TCGA-ER-A19D-06 21 44485567 44485567 G A CBS Missense_Mutation p.S199F 0.39 deleterious(0) probably_damaging(0.967) TCGA-ER-A19D-06 21 46842408 46842408 G T COL18A1-AS1 RNA 0.08 TCGA-ER-A19D-06 22 21384575 21384575 C T SLC7A4 Missense_Mutation p.D350N 0.81 deleterious(0.03) possibly_damaging(0.573) TCGA-ER-A19D-06 22 26423393 26423393 C T MYO18B Missense_Mutation p.L2485F 0.82 tolerated_low_confidence(0.14) benign(0.072) TCGA-ER-A19D-06 22 26692950 26692950 G A SEZ6L Missense_Mutation p.E356K 0.69 tolerated(0.11) probably_damaging(0.92) TCGA-ER-A19D-06 22 26736542 26736542 C T SEZ6L Missense_Mutation p.S719L 0.74 deleterious(0) probably_damaging(0.997) TCGA-ER-A19D-06 22 38622800 38622800 C T TMEM184B Silent p.R201R 0.82 TCGA-ER-A19D-06 22 43575962 43575962 G A TTLL12 Silent p.F197F 0.75 TCGA-ER-A19D-06 22 50729019 50729019 C T PLXNB2 5'UTR 0.93 TCGA-ER-A19D-06 2 107459496 107459496 T A ST6GAL2 Missense_Mutation p.E313V 0.27 probably_damaging(0.968) TCGA-ER-A19D-06 2 109526934 109526934 G A EDAR Missense_Mutation p.P262L 0.58 deleterious(0.05) possibly_damaging(0.462) TCGA-ER-A19D-06 2 112740542 112740542 C T MERTK Missense_Mutation p.S423F 0.23 tolerated(0.26) benign(0.303) TCGA-ER-A19D-06 2 113783714 113783714 G A IL36B Silent p.F119F 0.46 TCGA-ER-A19D-06 2 118575251 118575251 A G DDX18 Missense_Mutation p.E106G 0.23 tolerated(0.06) benign(0.028) TCGA-ER-A19D-06 2 121989453 121989453 G A TFCP2L1 Silent p.H430H 0.23 TCGA-ER-A19D-06 2 125547701 125547701 G A CNTNAP5 Missense_Mutation p.G991E 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 2 130878131 130878131 C T POTEF 5'UTR 0.54 TCGA-ER-A19D-06 2 131688755 131688755 G A ARHGEF4 Silent p.Q75Q 0.33 TCGA-ER-A19D-06 2 132235797 132235797 G A TUBA3D Missense_Mutation p.E22K 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-ER-A19D-06 2 136570389 136570389 C T LCT Silent p.E615E 0.23 TCGA-ER-A19D-06 2 160231216 160231216 C T BAZ2B Missense_Mutation p.E1352K 0.43 possibly_damaging(0.468) TCGA-ER-A19D-06 2 163134154 163134154 C T IFIH1 Silent p.R605R 0.24 TCGA-ER-A19D-06 2 168103229 168103229 G A XIRP2 Missense_Mutation p.G1776E 0.69 benign(0.004) TCGA-ER-A19D-06 2 168726177 168726177 G T B3GALT1 Nonsense_Mutation p.G210* 0.23 TCGA-ER-A19D-06 2 170097612 170097612 G A LRP2 Missense_Mutation p.R1311C 0.22 possibly_damaging(0.556) TCGA-ER-A19D-06 2 175664938 175664938 G A CHN1 Missense_Mutation p.S429F 0.57 deleterious(0.02) possibly_damaging(0.797) TCGA-ER-A19D-06 2 17698408 17698408 T A RAD51AP2 Missense_Mutation p.K425N 0.30 tolerated(0.1) possibly_damaging(0.775) TCGA-ER-A19D-06 2 179170937 179170937 C T OSBPL6 Missense_Mutation p.S9F 0.25 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-ER-A19D-06 2 179422027 179422027 C T TTN Missense_Mutation p.G29321E 0.45 TCGA-ER-A19D-06 2 179433686 179433686 C T TTN Missense_Mutation p.D25725N 0.48 TCGA-ER-A19D-06 2 179495596 179495596 C T TTN Missense_Mutation p.E14697K 0.28 TCGA-ER-A19D-06 2 179640203 179640203 C T TTN Missense_Mutation p.E2130K 0.47 TCGA-ER-A19D-06 2 189957116 189957116 C G COL5A2 Missense_Mutation p.E163Q 0.28 probably_damaging(0.992) TCGA-ER-A19D-06 2 196602829 196602829 C T DNAH7 Missense_Mutation p.R3964K 0.29 tolerated(1) benign(0.008) TCGA-ER-A19D-06 2 197521390 197521390 C T CCDC150 Silent p.D70D 0.36 TCGA-ER-A19D-06 2 197521391 197521391 C T CCDC150 Silent p.L71L 0.36 TCGA-ER-A19D-06 2 200136903 200136903 G A SATB2 3'UTR 0.50 TCGA-ER-A19D-06 2 203693724 203693724 G A ICA1L Silent p.S3S 0.28 TCGA-ER-A19D-06 2 219825520 219825520 G A CDK5R2 Silent p.K326K 0.53 TCGA-ER-A19D-06 2 219894278 219894278 G A CCDC108 Silent p.F499F 0.21 TCGA-ER-A19D-06 2 223339413 223339413 T C SGPP2 Missense_Mutation p.Y116H 0.29 tolerated(0.11) benign(0.326) TCGA-ER-A19D-06 2 225740795 225740795 G A DOCK10 Silent p.L297L 0.22 TCGA-ER-A19D-06 2 226516347 226516347 C T NYAP2 3'UTR 0.26 TCGA-ER-A19D-06 2 231134668 231134668 G A SP140 Missense_Mutation p.D482N 0.25 deleterious(0.04) benign(0.222) TCGA-ER-A19D-06 2 234367008 234367008 C T DGKD Nonsense_Mutation p.R887* 0.27 TCGA-ER-A19D-06 2 234638323 234638323 G A UGT1A3 Missense_Mutation p.G184D 0.24 deleterious(0) possibly_damaging(0.864) TCGA-ER-A19D-06 2 24260573 24260573 G A C2orf44 Missense_Mutation p.L598F 0.23 deleterious(0.02) possibly_damaging(0.554) TCGA-ER-A19D-06 2 27481643 27481643 G A SLC30A3 Silent p.V85V 0.10 TCGA-ER-A19D-06 2 27802108 27802108 C T C2orf16 Missense_Mutation p.S890F 0.26 deleterious(0) probably_damaging(0.994) TCGA-ER-A19D-06 2 27802109 27802109 C T C2orf16 Silent p.S890S 0.25 TCGA-ER-A19D-06 2 31457696 31457696 G A EHD3 Missense_Mutation p.G70E 0.56 deleterious(0) probably_damaging(0.994) TCGA-ER-A19D-06 2 31483452 31483452 A T EHD3 Missense_Mutation p.K193N 0.23 deleterious(0) possibly_damaging(0.798) TCGA-ER-A19D-06 2 46739111 46739111 C T ATP6V1E2 3'UTR 0.31 TCGA-ER-A19D-06 2 47249053 47249053 C T TTC7A Missense_Mutation p.A482V 0.47 deleterious(0.01) benign(0.043) TCGA-ER-A19D-06 2 48027152 48027152 G T MSH6 Missense_Mutation p.S677I 0.22 tolerated(0.38) probably_damaging(0.999) TCGA-ER-A19D-06 2 51254796 51254796 C T NRXN1 Missense_Mutation p.D206N 0.67 tolerated(0.5) benign(0.248) TCGA-ER-A19D-06 2 55467227 55467227 T A MTIF2 Missense_Mutation p.K597I 0.30 deleterious(0.01) possibly_damaging(0.844) TCGA-ER-A19D-06 2 74043308 74043308 C T C2orf78 Missense_Mutation p.S653F 0.51 tolerated(0.19) possibly_damaging(0.879) TCGA-ER-A19D-06 2 74607190 74607190 C G DCTN1 5'UTR 0.19 TCGA-ER-A19D-06 2 74607191 74607191 C T DCTN1 5'UTR 0.19 TCGA-ER-A19D-06 2 75426023 75426023 G A TACR1 Missense_Mutation p.P13L 0.24 tolerated(0.68) benign(0) TCGA-ER-A19D-06 2 95481214 95481214 G A ANKRD20A8P RNA 0.52 TCGA-ER-A19D-06 2 99448906 99448906 C T KIAA1211L Missense_Mutation p.E149K 0.57 deleterious(0.01) possibly_damaging(0.486) TCGA-ER-A19D-06 3 10417121 10417121 G A ATP2B2 Missense_Mutation p.S470L 0.25 deleterious(0) probably_damaging(0.997) TCGA-ER-A19D-06 3 108117669 108117669 C T MYH15 Missense_Mutation p.D1670N 0.25 deleterious(0.02) benign(0.065) TCGA-ER-A19D-06 3 112054804 112054804 A G CD200 Silent p.T9T 0.50 TCGA-ER-A19D-06 3 115439850 115439850 C T GAP43 3'UTR 0.41 TCGA-ER-A19D-06 3 119190234 119190234 A T POGLUT1 Silent p.L85L 0.58 TCGA-ER-A19D-06 3 120628589 120628589 C T STXBP5L Missense_Mutation p.T55I 0.15 tolerated(0.1) benign(0.002) TCGA-ER-A19D-06 3 121206697 121206697 G A POLQ Missense_Mutation p.S1694L 0.18 tolerated(0.13) benign(0.038) TCGA-ER-A19D-06 3 124807165 124807165 G A SLC12A8 Silent p.L657L 0.40 TCGA-ER-A19D-06 3 129291459 129291459 C T PLXND1 Missense_Mutation p.E1024K 0.46 tolerated(0.12) benign(0.016) TCGA-ER-A19D-06 3 130300460 130300460 G A COL6A6 Silent p.Q1201Q 0.30 TCGA-ER-A19D-06 3 17052315 17052315 C T PLCL2 Nonsense_Mutation p.Q367* 0.42 TCGA-ER-A19D-06 3 171329403 171329403 G A PLD1 Intron 0.21 TCGA-ER-A19D-06 3 184769774 184769774 C T VPS8 Silent p.F1416F 0.29 TCGA-ER-A19D-06 3 185969598 185969598 C T DGKG Missense_Mutation p.G571R 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 3 186572200 186572200 G A ADIPOQ Missense_Mutation p.G148S 0.44 deleterious(0) probably_damaging(0.995) TCGA-ER-A19D-06 3 196737653 196737653 C T MFI2 Missense_Mutation p.D416N 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 3 24001236 24001236 G T NR1D2 Missense_Mutation p.M149I 0.24 tolerated(0.08) benign(0.029) TCGA-ER-A19D-06 3 24188267 24188267 G A THRB Missense_Mutation p.S144F 0.20 deleterious(0.01) possibly_damaging(0.781) TCGA-ER-A19D-06 3 38087060 38087060 G A DLEC1 Silent p.L146L 0.34 TCGA-ER-A19D-06 3 44867530 44867530 G A KIF15 Splice_Site p.X850_splice 0.19 TCGA-ER-A19D-06 3 45537800 45537800 G A LARS2 Silent p.T519T 0.21 TCGA-ER-A19D-06 3 46753880 46753880 C T PRSS50 Silent p.E338E 0.47 TCGA-ER-A19D-06 3 48698609 48698609 C T CELSR3 Missense_Mutation p.E487K 0.89 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A19D-06 3 49698954 49698954 A T BSN Missense_Mutation p.N3226Y 0.28 unknown(0) TCGA-ER-A19D-06 3 51352435 51352435 C T DOCK3 Missense_Mutation p.P1093L 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 3 52434413 52434413 G A DNAH1 Missense_Mutation p.R4250Q 0.50 benign(0.009) TCGA-ER-A19D-06 3 52542315 52542315 C T STAB1 Silent p.F725F 0.21 TCGA-ER-A19D-06 3 54919598 54919598 G A CACNA2D3 Missense_Mutation p.E681K 0.31 tolerated(0.26) benign(0.004) TCGA-ER-A19D-06 3 55107559 55107559 C T CACNA2D3 Silent p.I1025I 0.24 TCGA-ER-A19D-06 3 58641326 58641326 C T FAM3D Intron 0.29 TCGA-ER-A19D-06 3 64673245 64673245 C A ADAMTS9 Missense_Mutation p.R30L 0.55 tolerated_low_confidence(0.29) benign(0.003) TCGA-ER-A19D-06 3 69153703 69153703 G A ARL6IP5 Silent p.P161P 0.27 TCGA-ER-A19D-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.61 deleterious(0) possibly_damaging(0.85) TCGA-ER-A19D-06 3 87294927 87294927 C T CHMP2B Nonsense_Mutation p.Q64* 0.46 TCGA-ER-A19D-06 3 9959561 9959561 C T IL17RC Intron 0.32 TCGA-ER-A19D-06 4 100527972 100527972 G A MTTP Missense_Mutation p.R471K 0.33 tolerated(1) benign(0.002) TCGA-ER-A19D-06 4 104079935 104079935 G T CENPE Missense_Mutation p.Q904K 0.42 benign(0.118) TCGA-ER-A19D-06 4 10599619 10599619 G A CLNK Silent p.F22F 0.42 TCGA-ER-A19D-06 4 114254312 114254312 C G ANK2 Missense_Mutation p.F1109L 0.44 benign(0.009) TCGA-ER-A19D-06 4 114824459 114824459 C T ARSJ Silent p.K257K 0.29 TCGA-ER-A19D-06 4 115586899 115586899 A T UGT8 Missense_Mutation p.Q343H 0.36 deleterious(0) probably_damaging(0.914) TCGA-ER-A19D-06 4 126371324 126371324 G A FAT4 Silent p.L3051L 0.38 TCGA-ER-A19D-06 4 138451538 138451538 C T PCDH18 Missense_Mutation p.E569K 0.37 tolerated(0.2) probably_damaging(0.999) TCGA-ER-A19D-06 4 147108513 147108513 G A LSM6 Missense_Mutation p.G61E 0.27 deleterious(0) probably_damaging(0.996) TCGA-ER-A19D-06 4 149075791 149075791 G A NR3C2 Missense_Mutation p.P759L 0.45 deleterious(0.01) possibly_damaging(0.864) TCGA-ER-A19D-06 4 155528085 155528085 G A FGG Missense_Mutation p.R301C 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 4 158074155 158074155 C T GLRB Missense_Mutation p.T397I 0.47 tolerated(0.33) possibly_damaging(0.898) TCGA-ER-A19D-06 4 183721183 183721183 C T TENM3 Silent p.F2593F 0.40 TCGA-ER-A19D-06 4 187005174 187005174 A T TLR3 Missense_Mutation p.E778D 0.29 deleterious(0.03) probably_damaging(1) TCGA-ER-A19D-06 4 25314461 25314461 C T ZCCHC4 Silent p.A10A 0.40 TCGA-ER-A19D-06 4 41984913 41984913 C T DCAF4L1 Silent p.F368F 0.26 TCGA-ER-A19D-06 4 42122147 42122148 CC T BEND4 Frame_Shift_Del p.R437Kfs*22 0.08 TCGA-ER-A19D-06 4 57209809 57209809 G A AASDH Silent p.V898V 0.39 TCGA-ER-A19D-06 4 6064047 6064047 C T JAKMIP1 Missense_Mutation p.E518K 0.41 deleterious(0) possibly_damaging(0.848) TCGA-ER-A19D-06 4 6288872 6288872 C T WFS1 Silent p.A95A 0.30 TCGA-ER-A19D-06 4 6612845 6612845 C T MAN2B2 Silent p.F801F 0.35 TCGA-ER-A19D-06 4 69327576 69327576 G A TMPRSS11E Missense_Mutation p.E17K 0.39 tolerated(0.44) benign(0.014) TCGA-ER-A19D-06 4 69696495 69696495 C T UGT2B10 Silent p.F495F 0.27 TCGA-ER-A19D-06 4 73962883 73962883 G C ANKRD17 Missense_Mutation p.P1710A 0.28 benign(0.005) TCGA-ER-A19D-06 4 74354467 74354467 C T AFM Silent p.I278I 0.39 TCGA-ER-A19D-06 4 75312296 75312296 A G AREG Missense_Mutation p.K36R 0.35 tolerated(0.11) benign(0.163) TCGA-ER-A19D-06 4 77250090 77250090 C T CCDC158 Silent p.R987R 0.33 TCGA-ER-A19D-06 4 77660587 77660587 G A SHROOM3 Missense_Mutation p.G421S 0.29 tolerated(0.2) probably_damaging(0.984) TCGA-ER-A19D-06 4 77660588 77660588 G A SHROOM3 Missense_Mutation p.G421D 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-ER-A19D-06 4 8616199 8616199 G A CPZ Missense_Mutation p.E493K 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-ER-A19D-06 4 88258508 88258508 C T HSD17B11 Missense_Mutation p.E275K 0.33 tolerated(0.22) benign(0.371) TCGA-ER-A19D-06 5 101583122 101583122 C T SLCO4C1 Missense_Mutation p.E549K 0.26 tolerated(0.89) benign(0.02) TCGA-ER-A19D-06 5 11082931 11082931 G A CTNND2 Nonsense_Mutation p.R889* 0.50 TCGA-ER-A19D-06 5 125968322 125968322 G A C5orf48 Missense_Mutation p.M57I 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A19D-06 5 134907531 134907531 A T CXCL14 3'UTR 0.19 TCGA-ER-A19D-06 5 13776728 13776728 G A DNAH5 Missense_Mutation p.P3065S 0.47 possibly_damaging(0.876) TCGA-ER-A19D-06 5 140187544 140187544 G A PCDHA4 Missense_Mutation p.G258R 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19D-06 5 140562935 140562935 G A PCDHB16 Silent p.R267R 0.55 TCGA-ER-A19D-06 5 146017869 146017869 C T PPP2R2B Silent p.G248G 0.33 TCGA-ER-A19D-06 5 150932928 150932928 C A FAT2 Silent p.G1322G 0.20 TCGA-ER-A19D-06 5 159686747 159686747 G A CCNJL Silent p.P152P 0.24 TCGA-ER-A19D-06 5 172659541 172659541 C T NKX2-5 3'UTR 0.54 TCGA-ER-A19D-06 5 180048050 180048050 G A FLT4 Intron 0.24 TCGA-ER-A19D-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.20 deleterious(0) possibly_damaging(0.482) TCGA-ER-A19D-06 5 39311416 39311416 C T C9 Missense_Mutation p.D312N 0.26 tolerated(0.17) benign(0.344) TCGA-ER-A19D-06 5 39377257 39377257 G A DAB2 Silent p.V544V 0.20 TCGA-ER-A19D-06 5 40955600 40955600 G A C7 Missense_Mutation p.R402Q 0.45 tolerated(0.09) benign(0.135) TCGA-ER-A19D-06 5 5240004 5240004 C T ADAMTS16 Missense_Mutation p.A830V 0.59 deleterious(0) possibly_damaging(0.517) TCGA-ER-A19D-06 5 68677755 68677755 C T RAD17 Missense_Mutation p.P138S 0.21 deleterious(0.03) probably_damaging(0.918) TCGA-ER-A19D-06 5 71494859 71494859 G A MAP1B Missense_Mutation p.E1893K 0.23 benign(0.4) TCGA-ER-A19D-06 5 75591654 75591654 C T SV2C Silent p.S463S 0.56 TCGA-ER-A19D-06 5 75866439 75866439 C T IQGAP2 Missense_Mutation p.T113I 0.54 tolerated(1) possibly_damaging(0.68) TCGA-ER-A19D-06 6 100368907 100368907 C T MCHR2 Missense_Mutation p.G311E 0.35 tolerated(0.98) probably_damaging(0.999) TCGA-ER-A19D-06 6 10751440 10751440 G A TMEM14B Missense_Mutation p.D59N 0.44 tolerated(0.25) benign(0.162) TCGA-ER-A19D-06 6 109850223 109850223 T A AK9 Missense_Mutation p.K1208N 0.41 deleterious(0.02) benign(0.017) TCGA-ER-A19D-06 6 110768188 110768188 C T SLC22A16 Missense_Mutation p.G180E 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 6 117130776 117130776 C T GPRC6A Missense_Mutation p.E67K 0.72 tolerated(0.06) benign(0.066) TCGA-ER-A19D-06 6 128222009 128222009 G A THEMIS Silent p.I23I 0.70 TCGA-ER-A19D-06 6 129636770 129636770 G A LAMA2 Nonsense_Mutation p.W1235* 0.73 TCGA-ER-A19D-06 6 130761987 130761987 C T TMEM200A Silent p.F140F 0.76 TCGA-ER-A19D-06 6 13644842 13644842 G A RANBP9 Silent p.I349I 0.18 TCGA-ER-A19D-06 6 151152185 151152185 T A PLEKHG1 Missense_Mutation p.F646L 0.59 tolerated(0.5) benign(0.004) TCGA-ER-A19D-06 6 152576738 152576738 G A SYNE1 Silent p.L6416L 0.42 TCGA-ER-A19D-06 6 155578089 155578089 G A TIAM2 Missense_Mutation p.G1647E 0.64 tolerated_low_confidence(0.13) benign(0.018) TCGA-ER-A19D-06 6 169639732 169639732 G A THBS2 Missense_Mutation p.S364F 0.72 deleterious(0.03) benign(0.03) TCGA-ER-A19D-06 6 26045730 26045730 C T HIST1H3C Missense_Mutation p.P31L 0.40 deleterious_low_confidence(0) benign(0.011) TCGA-ER-A19D-06 6 27879786 27879786 G A OR2B2 Silent p.F104F 0.43 TCGA-ER-A19D-06 6 29055068 29055068 G A OR2B3 5'UTR 0.48 TCGA-ER-A19D-06 6 30071529 30071529 A T TRIM31 Silent p.S354S 0.36 TCGA-ER-A19D-06 6 30570277 30570277 G A PPP1R10 Missense_Mutation p.P717S 0.43 deleterious_low_confidence(0.05) unknown(0) TCGA-ER-A19D-06 6 30627338 30627338 G A DHX16 Missense_Mutation p.R640W 0.32 deleterious(0.01) unknown(0) TCGA-ER-A19D-06 6 31696664 31696664 C T DDAH2 Nonsense_Mutation p.W92* 0.04 TCGA-ER-A19D-06 6 31733506 31733506 G A VWA7 Silent p.L847L 0.42 TCGA-ER-A19D-06 6 31747282 31747282 G A VARS Missense_Mutation p.A1107V 0.46 tolerated(0.27) benign(0.14) TCGA-ER-A19D-06 6 32049835 32049835 G A RNA5SP206 5'Flank 0.39 TCGA-ER-A19D-06 6 32049836 32049836 G A RNA5SP206 5'Flank 0.39 TCGA-ER-A19D-06 6 32944456 32944456 C T BRD2 Missense_Mutation p.P315S 0.12 tolerated(0.22) possibly_damaging(0.549) TCGA-ER-A19D-06 6 34846276 34846276 G A TAF11 3'UTR 0.48 TCGA-ER-A19D-06 6 35838101 35838101 G A SRPK1 Silent p.P316P 0.40 TCGA-ER-A19D-06 6 36652161 36652161 C T CDKN1A Missense_Mutation p.P95S 0.29 tolerated(0.26) benign(0.031) TCGA-ER-A19D-06 6 37438796 37438796 G A CMTR1 Splice_Site p.X502_splice 0.17 TCGA-ER-A19D-06 6 39047370 39047370 C T GLP1R Silent p.P358P 0.35 TCGA-ER-A19D-06 6 42625842 42625842 C T UBR2 Missense_Mutation p.H985Y 0.42 deleterious(0) benign(0.41) TCGA-ER-A19D-06 6 46826901 46826901 G A GPR116 Silent p.I913I 0.43 TCGA-ER-A19D-06 6 53370239 53370239 G A GCLC Missense_Mutation p.T449I 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-ER-A19D-06 6 74116114 74116114 G A DDX43 Missense_Mutation p.G279R 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 6 89891630 89891630 G A GABRR1 Missense_Mutation p.P315S 0.39 tolerated(1) possibly_damaging(0.654) TCGA-ER-A19D-06 6 97599701 97599701 G A MMS22L Missense_Mutation p.A1143V 0.14 tolerated(0.1) benign(0.079) TCGA-ER-A19D-06 7 105135651 105135651 G A PUS7 Silent p.F260F 0.22 TCGA-ER-A19D-06 7 106522626 106522626 G A PIK3CG Missense_Mutation p.G868D 0.39 deleterious(0) probably_damaging(0.929) TCGA-ER-A19D-06 7 107329560 107329560 C T SLC26A4 Missense_Mutation p.S355F 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 7 120373061 120373061 C T KCND2 Missense_Mutation p.S407F 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 7 123334878 123334878 A G WASL Silent p.C239C 0.19 TCGA-ER-A19D-06 7 130025088 130025088 G A CPA1 Missense_Mutation p.G297R 0.26 deleterious(0.04) possibly_damaging(0.867) TCGA-ER-A19D-06 7 138312160 138312160 C T SVOPL Silent p.L372L 0.25 TCGA-ER-A19D-06 7 138713678 138713678 G A ZC3HAV1L Missense_Mutation p.A177V 0.28 tolerated(0.11) benign(0.009) TCGA-ER-A19D-06 7 141752634 141752634 C T MGAM Silent p.Y1003Y 0.23 TCGA-ER-A19D-06 7 141957561 141957561 C T PRSS58 5'UTR 0.10 TCGA-ER-A19D-06 7 143018840 143018840 C T CLCN1 Missense_Mutation p.R199C 0.27 deleterious(0) probably_damaging(0.973) TCGA-ER-A19D-06 7 143657601 143657601 G A OR2F1 Missense_Mutation p.E180K 0.59 deleterious(0.01) benign(0.434) TCGA-ER-A19D-06 7 143771642 143771642 A T OR2A25 Missense_Mutation p.E110D 0.35 deleterious(0.02) possibly_damaging(0.788) TCGA-ER-A19D-06 7 143793069 143793069 G A OR2A12 Missense_Mutation p.S290N 0.26 deleterious(0) probably_damaging(0.912) TCGA-ER-A19D-06 7 144075892 144075892 C T ARHGEF5 Silent p.P1523P 0.23 TCGA-ER-A19D-06 7 144075893 144075893 C T ARHGEF5 Nonsense_Mutation p.R1524* 0.23 TCGA-ER-A19D-06 7 31862790 31862790 C T PDE1C Silent p.P553P 0.23 TCGA-ER-A19D-06 7 44198758 44198758 G A GCK 5'UTR 0.29 TCGA-ER-A19D-06 7 5348769 5348769 C T TNRC18 Silent p.Q2873Q 0.60 TCGA-ER-A19D-06 7 82580169 82580169 G A PCLO Silent p.F3245F 0.61 TCGA-ER-A19D-06 7 881763 881763 C T SUN1 Silent p.F149F 0.63 TCGA-ER-A19D-06 7 88424233 88424233 C T C7orf62 Silent p.Q8Q 0.21 TCGA-ER-A19D-06 7 92762252 92762252 A G SAMD9L Silent p.I1011I 0.32 TCGA-ER-A19D-06 8 10285791 10285791 G A MSRA Missense_Mutation p.G226D 0.53 deleterious(0) probably_damaging(0.958) TCGA-ER-A19D-06 8 105459605 105459605 C T DPYS Missense_Mutation p.E184K 0.22 tolerated(0.14) benign(0.17) TCGA-ER-A19D-06 8 107705019 107705019 C T OXR1 Nonsense_Mutation p.R198* 0.22 TCGA-ER-A19D-06 8 110131468 110131468 C T TRHR Silent p.F327F 0.25 TCGA-ER-A19D-06 8 110437414 110437414 C T PKHD1L1 Missense_Mutation p.P933L 0.28 deleterious(0) probably_damaging(0.979) TCGA-ER-A19D-06 8 110460435 110460435 C T PKHD1L1 Missense_Mutation p.S1947F 0.24 deleterious(0) possibly_damaging(0.595) TCGA-ER-A19D-06 8 114111073 114111073 C T CSMD3 Missense_Mutation p.D277N 0.36 tolerated(0.35) probably_damaging(0.936) TCGA-ER-A19D-06 8 128428248 128428248 G A POU5F1B Missense_Mutation p.G46E 0.85 tolerated(0.07) possibly_damaging(0.77) TCGA-ER-A19D-06 8 130789808 130789808 C - GSDMC Frame_Shift_Del p.S9Tfs*13 0.18 TCGA-ER-A19D-06 8 131848589 131848589 G A ADCY8 Missense_Mutation p.A870V 0.52 tolerated(0.13) benign(0.077) TCGA-ER-A19D-06 8 132991155 132991155 C T EFR3A Missense_Mutation p.P463L 0.23 deleterious(0.04) possibly_damaging(0.721) TCGA-ER-A19D-06 8 144358717 144358717 G A GLI4 Missense_Mutation p.E292K 0.50 deleterious(0) probably_damaging(0.998) TCGA-ER-A19D-06 8 2057234 2057234 G A MYOM2 Missense_Mutation p.R1031Q 0.55 tolerated(0.85) benign(0.001) TCGA-ER-A19D-06 8 23294584 23294584 G A ENTPD4 Missense_Mutation p.L413F 0.46 tolerated(0.13) probably_damaging(1) TCGA-ER-A19D-06 8 2836281 2836281 G A CSMD1 Missense_Mutation p.R2807C 0.71 probably_damaging(0.999) TCGA-ER-A19D-06 8 30916764 30916764 C T WRN Silent p.F64F 0.28 TCGA-ER-A19D-06 8 3245065 3245065 G A CSMD1 Silent p.L911L 0.71 TCGA-ER-A19D-06 8 36793381 36793381 G A KCNU1 Silent p.R1131R 0.53 TCGA-ER-A19D-06 8 39467023 39467023 G A ADAM18 Missense_Mutation p.G96E 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 8 41522452 41522452 C T ANK1 Intron 0.24 TCGA-ER-A19D-06 8 41552247 41552247 C G ANK1 Missense_Mutation p.V1105L 0.62 tolerated(0.09) benign(0.052) TCGA-ER-A19D-06 8 43046651 43046651 C T HGSNAT Missense_Mutation p.S388F 0.51 tolerated(0.71) benign(0.014) TCGA-ER-A19D-06 8 52325795 52325795 C T PXDNL Missense_Mutation p.D607N 0.23 deleterious(0.04) benign(0.125) TCGA-ER-A19D-06 8 68989633 68989633 G A PREX2 Missense_Mutation p.G524E 0.17 deleterious(0) probably_damaging(0.967) TCGA-ER-A19D-06 8 70513987 70513987 G A SULF1 Silent p.K328K 0.27 TCGA-ER-A19D-06 8 73848346 73848346 C T KCNB2 Silent p.F252F 0.29 TCGA-ER-A19D-06 9 103111476 103111476 A C TEX10 Missense_Mutation p.L57R 0.60 deleterious(0) probably_damaging(0.996) TCGA-ER-A19D-06 9 104192063 104192063 C T ALDOB Missense_Mutation p.E100K 0.40 tolerated(0.85) benign(0.014) TCGA-ER-A19D-06 9 104192064 104192064 C T ALDOB Silent p.K99K 0.40 TCGA-ER-A19D-06 9 115631239 115631239 C T SNX30 3'UTR 0.42 TCGA-ER-A19D-06 9 121929549 121929549 C T BRINP1 Missense_Mutation p.R700Q 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-ER-A19D-06 9 123742513 123742513 A G C5 Missense_Mutation p.I1169T 0.36 tolerated(0.73) benign(0.001) TCGA-ER-A19D-06 9 123742514 123742514 T C C5 Missense_Mutation p.I1169V 0.36 tolerated(0.29) benign(0.04) TCGA-ER-A19D-06 9 125004149 125004149 G A RBM18 3'UTR 0.41 TCGA-ER-A19D-06 9 131476863 131476863 C T PKN3 Missense_Mutation p.P502S 0.40 tolerated(0.61) benign(0.003) TCGA-ER-A19D-06 9 131777152 131777152 T C SH3GLB2 Silent p.E122E 0.39 TCGA-ER-A19D-06 9 131832549 131832549 G A FAM73B Silent p.R533R 0.29 TCGA-ER-A19D-06 9 134351771 134351771 A T PRRC2B Missense_Mutation p.R1419W 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 9 134363292 134363292 C T PRRC2B Missense_Mutation p.L2012F 0.17 deleterious(0) probably_damaging(0.982) TCGA-ER-A19D-06 9 137659200 137659200 G A COL5A1 Silent p.K744K 0.22 TCGA-ER-A19D-06 9 139925179 139925179 C T FUT7 Missense_Mutation p.G338S 0.33 tolerated(0.79) benign(0.006) TCGA-ER-A19D-06 9 140079372 140079372 G A ANAPC2 Silent p.I347I 0.33 TCGA-ER-A19D-06 9 140878646 140878646 C T CACNA1B Silent p.S571S 0.38 TCGA-ER-A19D-06 9 14639895 14639895 G A ZDHHC21 Missense_Mutation p.T207I 0.67 tolerated(0.22) benign(0.068) TCGA-ER-A19D-06 9 19346844 19346844 C G DENND4C Missense_Mutation p.F1310L 0.59 tolerated(0.65) benign(0.002) TCGA-ER-A19D-06 9 21816739 21816739 G A MTAP Silent p.K49K 0.77 TCGA-ER-A19D-06 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.63 TCGA-ER-A19D-06 9 70177128 70177128 C T FOXD4L5 Missense_Mutation p.E286K 0.42 deleterious(0.04) benign(0.002) TCGA-ER-A19D-06 9 91616371 91616371 C T S1PR3 Silent p.L86L 0.77 TCGA-ER-A19D-06 X 100092352 100092352 A T CSTF2 Missense_Mutation p.M509L 0.59 tolerated(0.39) benign(0) TCGA-ER-A19D-06 X 10181826 10181826 G A CLCN4 Nonsense_Mutation p.W561* 0.26 TCGA-ER-A19D-06 X 105011656 105011656 G A IL1RAPL2 3'UTR 0.20 TCGA-ER-A19D-06 X 106466000 106466000 G A PIH1D3 Missense_Mutation p.V120M 0.19 deleterious(0) probably_damaging(0.998) TCGA-ER-A19D-06 X 106466001 106466001 T A PIH1D3 Missense_Mutation p.V120E 0.19 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 X 107850081 107850081 C T COL4A5 Missense_Mutation p.P785L 0.21 unknown(0) TCGA-ER-A19D-06 X 107850122 107850122 G A COL4A5 Missense_Mutation p.G799S 0.45 unknown(0) TCGA-ER-A19D-06 X 107850123 107850123 G A COL4A5 Splice_Site p.X799_splice 0.45 TCGA-ER-A19D-06 X 112048315 112048315 C T AMOT Missense_Mutation p.E546K 0.28 unknown(0) TCGA-ER-A19D-06 X 118227629 118227629 C T KIAA1210 Splice_Site p.X495_splice 0.59 TCGA-ER-A19D-06 X 118986799 118986799 C T UPF3B Silent p.G31G 0.55 TCGA-ER-A19D-06 X 125298919 125298919 G A DCAF12L2 Missense_Mutation p.S330F 0.25 deleterious(0.02) possibly_damaging(0.781) TCGA-ER-A19D-06 X 12838868 12838868 C T PRPS2 Silent p.V273V 0.50 TCGA-ER-A19D-06 X 128602861 128602861 G A SMARCA1 Nonsense_Mutation p.R863* 0.15 TCGA-ER-A19D-06 X 130219668 130219668 C T ARHGAP36 Silent p.I354I 0.25 TCGA-ER-A19D-06 X 131212337 131212337 C T FRMD7 Missense_Mutation p.E570K 0.52 tolerated(0.13) benign(0.002) TCGA-ER-A19D-06 X 134992215 134992215 G A SAGE1 Missense_Mutation p.E584K 0.23 deleterious(0.05) benign(0.225) TCGA-ER-A19D-06 X 135432543 135432543 C T GPR112 Silent p.S2226S 0.22 TCGA-ER-A19D-06 X 135631094 135631094 G A VGLL1 Silent p.R187R 0.47 TCGA-ER-A19D-06 X 146340352 146340352 G A MIR509-2 RNA 0.19 TCGA-ER-A19D-06 X 14915261 14915261 G A MOSPD2 Silent p.K126K 0.26 TCGA-ER-A19D-06 X 151908889 151908889 C T CSAG1 Missense_Mutation p.S43F 0.25 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ER-A19D-06 X 152954135 152954135 G A SLC6A8 Missense_Mutation p.G36S 0.50 tolerated(0.78) benign(0) TCGA-ER-A19D-06 X 153068892 153068892 G A PDZD4 Silent p.T742T 0.51 TCGA-ER-A19D-06 X 153218265 153218265 C T HCFC1 Missense_Mutation p.D1548N 0.48 deleterious_low_confidence(0.04) probably_damaging(0.971) TCGA-ER-A19D-06 X 153609333 153609333 T A EMD Missense_Mutation p.Y181N 0.47 tolerated(0.07) probably_damaging(0.945) TCGA-ER-A19D-06 X 18264864 18264864 C T SCML2 Missense_Mutation p.G552E 0.50 tolerated(0.37) benign(0.002) TCGA-ER-A19D-06 X 18836172 18836172 A T PPEF1 Missense_Mutation p.E470D 0.47 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 X 2406965 2406965 G A ZBED1 Missense_Mutation p.P599L 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A19D-06 X 3021913 3021913 G A ARSF Missense_Mutation p.D405N 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19D-06 X 3030423 3030423 G A ARSF Silent p.K533K 0.31 TCGA-ER-A19D-06 X 32380965 32380965 G A DMD Silent p.P1755P 0.20 TCGA-ER-A19D-06 X 46952362 46952362 C T RGN 3'UTR 0.30 TCGA-ER-A19D-06 X 48887284 48887284 T A TFE3 3'UTR 0.55 TCGA-ER-A19D-06 X 51150748 51150748 G A CXorf67 Missense_Mutation p.D294N 0.47 tolerated(0.22) benign(0) TCGA-ER-A19D-06 X 53240720 53240720 G A KDM5C Missense_Mutation p.P454S 0.29 deleterious(0) probably_damaging(0.975) TCGA-ER-A19D-06 X 54014280 54014280 C T PHF8 Missense_Mutation p.E646K 0.52 tolerated(0.05) benign(0.003) TCGA-ER-A19D-06 X 54470529 54470529 G A TSR2 Missense_Mutation p.R118K 0.23 tolerated(1) benign(0.001) TCGA-ER-A19D-06 X 63412416 63412416 C T AMER1 Missense_Mutation p.E251K 0.20 tolerated(0.72) benign(0.026) TCGA-ER-A19D-06 X 69672554 69672554 C T DLG3 Intron 0.23 TCGA-ER-A19D-06 X 70352255 70352255 G A MED12 Missense_Mutation p.V1428M 0.31 possibly_damaging(0.866) TCGA-ER-A19D-06 X 71350311 71350311 C T RGAG4 Silent p.K360K 0.68 TCGA-ER-A19D-06 X 7268099 7268099 C T STS Missense_Mutation p.P517S 0.30 deleterious(0.02) benign(0.021) TCGA-ER-A19D-06 X 73043903 73043903 T A XIST RNA 0.14 TCGA-ER-A19D-06 X 83129238 83129238 G A CYLC1 Missense_Mutation p.D508N 0.17 tolerated(0.13) benign(0.07) TCGA-ER-A19D-06 X 84586003 84586003 G A POF1B Missense_Mutation p.T269M 0.60 tolerated(0.09) benign(0.045) TCGA-ER-A19D-06 X 86873070 86873070 G A KLHL4 Missense_Mutation p.R288Q 0.21 deleterious(0.01) possibly_damaging(0.669) TCGA-ER-A19D-06 X 86890621 86890621 G A KLHL4 Missense_Mutation p.D591N 0.21 tolerated(0.05) probably_damaging(0.988) TCGA-ER-A19D-06 X 99662087 99662087 G A PCDH19 Silent p.F503F 0.54 TCGA-ER-A19D-06 X 99936232 99936232 C T SYTL4 Missense_Mutation p.R517Q 0.30 tolerated(0.23) benign(0.347) TCGA-ER-A19E-06 10 101554225 101554225 G A ABCC2 Missense_Mutation p.S211N 0.76 tolerated(0.14) possibly_damaging(0.694) TCGA-ER-A19E-06 10 13481303 13481303 C T BEND7 Missense_Mutation p.D426N 0.77 benign(0) TCGA-ER-A19E-06 10 21141544 21141544 C T NEBL Missense_Mutation p.G313E 0.50 deleterious(0) possibly_damaging(0.796) TCGA-ER-A19E-06 10 25886859 25886859 G A GPR158 Silent p.Q768Q 0.67 TCGA-ER-A19E-06 10 37422960 37422960 C T ANKRD30A Missense_Mutation p.A189V 0.75 deleterious(0) probably_damaging(0.918) TCGA-ER-A19E-06 10 37506704 37506704 C T ANKRD30A Silent p.I999I 0.72 TCGA-ER-A19E-06 10 50121405 50121405 C T LRRC18 Intron 0.65 TCGA-ER-A19E-06 10 51464851 51464851 G A AGAP7 Silent p.S535S 0.67 TCGA-ER-A19E-06 10 61946534 61946534 C A ANK3 Missense_Mutation p.G675V 0.57 probably_damaging(1) TCGA-ER-A19E-06 10 69934200 69934200 C T MYPN Missense_Mutation p.P784L 0.76 tolerated(0.08) benign(0.002) TCGA-ER-A19E-06 10 72533991 72533991 C A TBATA Nonsense_Mutation p.E299* 0.65 TCGA-ER-A19E-06 10 75393823 75393823 C T MYOZ1 Missense_Mutation p.G168E 0.78 tolerated(0.15) benign(0.077) TCGA-ER-A19E-06 10 79793625 79793625 T C RPS24 5'UTR 0.37 TCGA-ER-A19E-06 10 82126485 82126485 C T DYDC2 Silent p.F118F 0.78 TCGA-ER-A19E-06 10 97028582 97028582 C T PDLIM1 Missense_Mutation p.E96K 0.81 deleterious(0.01) benign(0.066) TCGA-ER-A19E-06 10 97779035 97779035 A G CC2D2B Missense_Mutation p.K200E 0.74 tolerated(0.5) possibly_damaging(0.547) TCGA-ER-A19E-06 10 98799763 98799763 G A SLIT1 Missense_Mutation p.P760L 0.58 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 11 104897574 104897574 G A CASP1 Missense_Mutation p.R371C 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A19E-06 11 106680916 106680916 G A GUCY1A2 Missense_Mutation p.P499S 0.25 deleterious(0) probably_damaging(0.999) TCGA-ER-A19E-06 11 111225161 111225161 G A POU2AF1 Missense_Mutation p.A199V 0.59 deleterious(0.01) possibly_damaging(0.513) TCGA-ER-A19E-06 11 113934559 113934559 C T ZBTB16 Silent p.P179P 0.56 TCGA-ER-A19E-06 11 1155154 1155154 C T MUC5AC Silent p.L54L 0.36 TCGA-ER-A19E-06 11 117152666 117152666 C T RNF214 Silent p.P464P 0.24 TCGA-ER-A19E-06 11 117376385 117376385 G A DSCAML1 Missense_Mutation p.P676S 0.18 tolerated(0.2) possibly_damaging(0.786) TCGA-ER-A19E-06 11 122722418 122722418 T C CRTAM Missense_Mutation p.Y71H 0.33 deleterious(0) probably_damaging(0.996) TCGA-ER-A19E-06 11 12284034 12284034 C T MICAL2 Silent p.F1114F 0.30 TCGA-ER-A19E-06 11 12315468 12315468 G A MICALCL Missense_Mutation p.E164K 0.12 tolerated(0.24) benign(0.01) TCGA-ER-A19E-06 11 123908941 123908941 G A OR10G7 Silent p.F256F 0.41 TCGA-ER-A19E-06 11 124794949 124794949 C T HEPACAM Silent p.V34V 0.39 TCGA-ER-A19E-06 11 125617666 125617666 A T PATE1 Missense_Mutation p.I66L 0.44 tolerated(0.37) benign(0.006) TCGA-ER-A19E-06 11 1265528 1265528 C T MUC5B Missense_Mutation p.T2473I 0.47 unknown(0) TCGA-ER-A19E-06 11 14992716 14992716 G A CALCA Missense_Mutation p.P8L 0.43 tolerated(0.05) possibly_damaging(0.447) TCGA-ER-A19E-06 11 14992717 14992717 G A CALCA Missense_Mutation p.P8S 0.44 tolerated(0.2) benign(0.043) TCGA-ER-A19E-06 11 17793621 17793621 A G KCNC1 Missense_Mutation p.H327R 0.60 deleterious(0) probably_damaging(0.999) TCGA-ER-A19E-06 11 18487325 18487325 C T LDHAL6A Missense_Mutation p.P129L 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-ER-A19E-06 11 19077844 19077844 G A MRGPRX2 Silent p.L36L 0.52 TCGA-ER-A19E-06 11 22396400 22396400 A G SLC17A6 Missense_Mutation p.T381A 0.46 deleterious(0.03) possibly_damaging(0.708) TCGA-ER-A19E-06 11 26587199 26587199 C T MUC15 Silent p.A96A 0.58 TCGA-ER-A19E-06 11 33121205 33121205 A C CSTF3 Nonsense_Mutation p.Y295* 0.46 TCGA-ER-A19E-06 11 35456265 35456265 C T PAMR1 Missense_Mutation p.G491E 0.55 tolerated(0.24) possibly_damaging(0.599) TCGA-ER-A19E-06 11 49831878 49831878 G A RP11-707M1.1 RNA 0.34 TCGA-ER-A19E-06 11 5443851 5443851 G A OR51Q1 Missense_Mutation p.E141K 0.28 tolerated(0.65) benign(0.003) TCGA-ER-A19E-06 11 55595042 55595042 C T OR5L2 Silent p.A116A 0.32 TCGA-ER-A19E-06 11 55703451 55703451 G A OR5I1 Silent p.I142I 0.43 TCGA-ER-A19E-06 11 55872707 55872707 C T OR8H2 Silent p.F63F 0.26 TCGA-ER-A19E-06 11 56113702 56113702 C A OR8K1 Missense_Mutation p.T63N 0.57 deleterious_low_confidence(0.02) benign(0.361) TCGA-ER-A19E-06 11 58275155 58275155 G A OR5B21 Missense_Mutation p.L142F 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-ER-A19E-06 11 58391965 58391965 C T CNTF Silent p.S191S 0.21 TCGA-ER-A19E-06 11 59611429 59611429 G T GIF Missense_Mutation p.A60D 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 11 5969509 5969509 G A OR56A3 Silent p.L311L 0.17 TCGA-ER-A19E-06 11 6232267 6232267 G A C11orf42 Missense_Mutation p.D333N 0.34 tolerated_low_confidence(0.13) benign(0.024) TCGA-ER-A19E-06 11 62556590 62556590 C T TMEM179B Silent p.Y64Y 0.55 TCGA-ER-A19E-06 11 62761330 62761330 C T SLC22A8 Missense_Mutation p.V413I 0.41 tolerated(0.12) benign(0.006) TCGA-ER-A19E-06 11 63276045 63276045 G A LGALS12 Silent p.T52T 0.45 TCGA-ER-A19E-06 11 63486921 63486921 C T RTN3 Missense_Mutation p.S316L 0.28 deleterious(0.02) benign(0.085) TCGA-ER-A19E-06 11 64323864 64323864 G A SLC22A11 Silent p.K131K 0.36 TCGA-ER-A19E-06 11 64390348 64390348 C T NRXN2 Silent p.A1350A 0.58 TCGA-ER-A19E-06 11 64602565 64602565 C T CDC42BPG Missense_Mutation p.E672K 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A19E-06 11 66050610 66050610 C T CNIH2 Silent p.H101H 0.45 TCGA-ER-A19E-06 11 66062587 66062587 C T TMEM151A Silent p.L290L 0.33 TCGA-ER-A19E-06 11 68704037 68704037 C G IGHMBP2 Missense_Mutation p.P697A 0.14 tolerated(0.15) benign(0.005) TCGA-ER-A19E-06 11 6943044 6943044 G A OR2D3 Missense_Mutation p.G271E 0.26 deleterious(0) possibly_damaging(0.694) TCGA-ER-A19E-06 11 71276908 71276908 G A KRTAP5-10 Missense_Mutation p.G92E 0.18 unknown(0) TCGA-ER-A19E-06 11 71907092 71907092 C T FOLR1 Silent p.D215D 0.25 TCGA-ER-A19E-06 11 7324557 7324557 C T SYT9 Nonsense_Mutation p.Q145* 0.33 TCGA-ER-A19E-06 11 74883552 74883552 G A SLCO2B1 Missense_Mutation p.E304K 0.55 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A19E-06 11 77090974 77090974 G A PAK1 Missense_Mutation p.H86Y 0.33 deleterious(0) probably_damaging(0.92) TCGA-ER-A19E-06 11 78239982 78239982 G T NARS2 Missense_Mutation p.P199T 0.46 tolerated(0.87) benign(0.013) TCGA-ER-A19E-06 11 7981881 7981881 G A NLRP10 Silent p.F426F 0.39 TCGA-ER-A19E-06 11 94113452 94113452 G A GPR83 Missense_Mutation p.P379S 0.25 tolerated(0.05) benign(0.061) TCGA-ER-A19E-06 12 100567185 100567185 G A RP11-175P13.3 RNA 0.47 TCGA-ER-A19E-06 12 103288625 103288625 G A PAH Silent p.F80F 0.45 TCGA-ER-A19E-06 12 104529282 104529282 A T NFYB 5'UTR 0.43 TCGA-ER-A19E-06 12 111884982 111884982 C T SH2B3 Missense_Mutation p.T327M 0.37 tolerated(0.09) benign(0.022) TCGA-ER-A19E-06 12 113537799 113537799 G A RASAL1 Missense_Mutation p.R786C 0.58 deleterious(0.04) possibly_damaging(0.828) TCGA-ER-A19E-06 12 113565627 113565627 G C RASAL1 Silent p.A96A 0.23 TCGA-ER-A19E-06 12 119592147 119592147 G A SRRM4 Silent p.R497R 0.31 TCGA-ER-A19E-06 12 121779840 121779840 G A ANAPC5 Missense_Mutation p.S208F 0.46 deleterious(0) possibly_damaging(0.705) TCGA-ER-A19E-06 12 122353785 122353785 C T PSMD9 Silent p.I193I 0.28 TCGA-ER-A19E-06 12 122958303 122958303 G A ZCCHC8 Missense_Mutation p.A622V 0.50 tolerated(0.18) benign(0.011) TCGA-ER-A19E-06 12 124319983 124319983 T C DNAH10 Missense_Mutation p.Y1486H 0.56 probably_damaging(1) TCGA-ER-A19E-06 12 124352591 124352591 G A DNAH10 Missense_Mutation p.E2364K 0.41 benign(0.008) TCGA-ER-A19E-06 12 125509542 125509542 A T BRI3BP Missense_Mutation p.N108Y 0.20 deleterious(0) possibly_damaging(0.736) TCGA-ER-A19E-06 12 130184404 130184404 A T TMEM132D Missense_Mutation p.F307I 0.19 tolerated(0.12) benign(0.016) TCGA-ER-A19E-06 12 133294583 133294583 A G PGAM5 Missense_Mutation p.E199G 0.26 deleterious(0.01) benign(0.406) TCGA-ER-A19E-06 12 16050834 16050834 C T STRAP Silent p.S219S 0.66 TCGA-ER-A19E-06 12 2786441 2786441 G A CACNA1C Intron 0.83 TCGA-ER-A19E-06 12 3387672 3387672 C T TSPAN9 Missense_Mutation p.S50L 0.73 tolerated(0.05) possibly_damaging(0.537) TCGA-ER-A19E-06 12 42768707 42768707 C G PPHLN1 Silent p.S114S 0.17 TCGA-ER-A19E-06 12 46244875 46244875 C T ARID2 Missense_Mutation p.S990L 0.46 deleterious_low_confidence(0.01) benign(0.357) TCGA-ER-A19E-06 12 48272720 48272720 C T VDR Intron 0.76 TCGA-ER-A19E-06 12 55846667 55846667 C T OR6C2 Silent p.L224L 0.84 TCGA-ER-A19E-06 12 55863228 55863228 T A OR6C70 Missense_Mutation p.K232M 0.76 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-ER-A19E-06 12 56031264 56031264 G A OR10P1 Missense_Mutation p.E197K 0.81 deleterious(0.03) possibly_damaging(0.899) TCGA-ER-A19E-06 12 56092222 56092222 G A ITGA7 Silent p.S383S 0.75 TCGA-ER-A19E-06 12 58145431 58145431 G T CDK4 Missense_Mutation p.R24S 0.85 deleterious(0) possibly_damaging(0.881) TCGA-ER-A19E-06 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.66 deleterious(0.02) benign(0.145) TCGA-ER-A19E-06 12 7526034 7526034 G A CD163L1 Silent p.F1204F 0.73 TCGA-ER-A19E-06 12 82796892 82796892 T A METTL25 Missense_Mutation p.F421Y 0.72 tolerated(0.13) probably_damaging(0.997) TCGA-ER-A19E-06 12 95531384 95531384 T A FGD6 Missense_Mutation p.I970F 0.16 deleterious(0) probably_damaging(0.99) TCGA-ER-A19E-06 13 37619411 37619411 G A SUPT20H Silent p.L89L 0.88 TCGA-ER-A19E-06 13 38266406 38266406 T G TRPC4 Silent p.R322R 0.46 TCGA-ER-A19E-06 13 53422301 53422301 C T PCDH8 Missense_Mutation p.D91N 0.81 deleterious(0) probably_damaging(0.982) TCGA-ER-A19E-06 13 67801278 67801278 G A PCDH9 Missense_Mutation p.T432I 0.81 tolerated(0.08) benign(0.077) TCGA-ER-A19E-06 13 78320656 78320656 G A SLAIN1 Silent p.R144R 0.16 TCGA-ER-A19E-06 13 96238367 96238367 C T DZIP1 Missense_Mutation p.E748K 0.34 tolerated(0.28) possibly_damaging(0.587) TCGA-ER-A19E-06 14 100374010 100374010 C T EML1 Silent p.S367S 0.55 TCGA-ER-A19E-06 14 105411806 105411806 G A AHNAK2 Nonsense_Mutation p.Q3328* 0.81 TCGA-ER-A19E-06 14 107113909 107113909 C T IGHV3-64 Silent p.G62G 0.35 TCGA-ER-A19E-06 14 107131248 107131248 C T IGHV3-66 Missense_Mutation p.G45R 0.77 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-ER-A19E-06 14 20852664 20852664 G A TEP1 Silent p.Y1075Y 0.78 TCGA-ER-A19E-06 14 21486174 21486174 G A NDRG2 Silent p.F307F 0.72 TCGA-ER-A19E-06 14 51223778 51223778 G A NIN Silent p.L1324L 0.61 TCGA-ER-A19E-06 14 55881145 55881145 T A TBPL2 Missense_Mutation p.E360D 0.67 tolerated(0.1) benign(0.013) TCGA-ER-A19E-06 14 57114180 57114180 G A TMEM260 Missense_Mutation p.E697K 0.77 tolerated(0.06) benign(0.002) TCGA-ER-A19E-06 14 67390967 67390967 C T GPHN Silent p.I262I 0.72 TCGA-ER-A19E-06 14 75266262 75266262 C T YLPM1 Missense_Mutation p.P1421L 0.66 possibly_damaging(0.52) TCGA-ER-A19E-06 14 75266263 75266263 C T YLPM1 Silent p.P1421P 0.65 TCGA-ER-A19E-06 14 94935929 94935929 G A SERPINA9 Silent p.S101S 0.61 TCGA-ER-A19E-06 15 100591903 100591903 G A ADAMTS17 Missense_Mutation p.H777Y 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19E-06 15 101717867 101717867 G A CHSY1 Missense_Mutation p.S712F 0.37 deleterious(0) probably_damaging(0.981) TCGA-ER-A19E-06 15 20651163 20651163 C T HERC2P3 RNA 0.10 TCGA-ER-A19E-06 15 22368991 22368991 G C OR4M2 Missense_Mutation p.R139P 0.11 tolerated(0.08) benign(0.312) TCGA-ER-A19E-06 15 27777818 27777818 G A GABRG3 Missense_Mutation p.E399K 0.41 tolerated(0.13) possibly_damaging(0.473) TCGA-ER-A19E-06 15 31354898 31354898 T C TRPM1 Missense_Mutation p.N342D 0.43 tolerated(0.66) benign(0.138) TCGA-ER-A19E-06 15 40757536 40757536 C T BAHD1 Silent p.P685P 0.35 TCGA-ER-A19E-06 15 40763707 40763707 G C CHST14 Missense_Mutation p.D99H 0.47 deleterious(0.01) benign(0.303) TCGA-ER-A19E-06 15 40764480 40764480 C T CHST14 Silent p.I356I 0.26 TCGA-ER-A19E-06 15 42050032 42050032 C T MGA Nonsense_Mutation p.R2396* 0.46 TCGA-ER-A19E-06 15 43924526 43924526 G A CATSPER2 Silent p.L478L 0.77 TCGA-ER-A19E-06 15 50152602 50152602 G A ATP8B4 Missense_Mutation p.S1123L 0.35 tolerated(0.16) benign(0.169) TCGA-ER-A19E-06 15 50535399 50535399 C T HDC Missense_Mutation p.D395N 0.58 deleterious(0.04) benign(0.375) TCGA-ER-A19E-06 15 51763564 51763564 G A DMXL2 Silent p.H2416H 0.54 TCGA-ER-A19E-06 15 53908113 53908113 C T WDR72 Missense_Mutation p.D764N 0.40 tolerated(0.37) benign(0.009) TCGA-ER-A19E-06 15 56961140 56961140 G A ZNF280D Missense_Mutation p.R476C 0.67 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A19E-06 15 62989971 62989971 C T TLN2 Silent p.G459G 0.52 TCGA-ER-A19E-06 15 65262491 65262491 G A SPG21 Silent p.D174D 0.18 TCGA-ER-A19E-06 15 65962220 65962220 G A DENND4A Missense_Mutation p.P1561S 0.61 tolerated(0.4) benign(0.001) TCGA-ER-A19E-06 15 74740848 74740848 G A UBL7 Missense_Mutation p.L326F 0.51 tolerated(0.21) benign(0.005) TCGA-ER-A19E-06 15 75766106 75766106 G A PTPN9 Missense_Mutation p.P378S 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 16 15703478 15703478 G A KIAA0430 Missense_Mutation p.P1286S 0.77 deleterious(0) probably_damaging(0.999) TCGA-ER-A19E-06 16 16225750 16225750 C T ABCC1 Silent p.F1308F 0.80 TCGA-ER-A19E-06 16 19184727 19184727 C T SYT17 Intron 0.31 TCGA-ER-A19E-06 16 21666786 21666786 C T METTL9 3'UTR 0.80 TCGA-ER-A19E-06 16 29937338 29937338 G A KCTD13 Missense_Mutation p.S6L 1.00 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A19E-06 16 67694252 67694252 C T ACD Missense_Mutation p.G44S 0.25 tolerated_low_confidence(0.23) benign(0.009) TCGA-ER-A19E-06 16 67694253 67694253 C T ACD Silent p.R43R 0.24 TCGA-ER-A19E-06 16 68405050 68405050 G A SMPD3 Silent p.F345F 0.47 TCGA-ER-A19E-06 16 73126985 73126985 C G HCCAT5 RNA 0.25 TCGA-ER-A19E-06 16 74447022 74447022 G A CLEC18B Missense_Mutation p.P197S 0.37 deleterious(0) probably_damaging(0.991) TCGA-ER-A19E-06 16 74491788 74491788 G A GLG1 Silent p.T1083T 0.37 TCGA-ER-A19E-06 16 747111 747111 C T FBXL16 Missense_Mutation p.E99K 0.83 tolerated(0.07) benign(0.233) TCGA-ER-A19E-06 16 747153 747153 C T FBXL16 Missense_Mutation p.A85T 0.82 tolerated(0.59) benign(0.007) TCGA-ER-A19E-06 16 77401384 77401384 G A ADAMTS18 Silent p.H244H 0.45 TCGA-ER-A19E-06 16 83781839 83781839 C T CDH13 Silent p.F602F 0.41 TCGA-ER-A19E-06 16 85141473 85141473 T G FAM92B Silent p.S135S 0.32 TCGA-ER-A19E-06 16 89756958 89756958 C T CDK10 Intron 0.40 TCGA-ER-A19E-06 17 10258026 10258026 C T MYH13 Missense_Mutation p.D326N 0.83 tolerated(0.22) benign(0.004) TCGA-ER-A19E-06 17 10411227 10411227 G A MYH1 Silent p.F648F 0.82 TCGA-ER-A19E-06 17 11584057 11584057 G A DNAH9 Nonsense_Mutation p.W1198* 0.90 TCGA-ER-A19E-06 17 13400095 13400095 C T HS3ST3A1 Missense_Mutation p.E214K 0.79 deleterious(0) probably_damaging(0.935) TCGA-ER-A19E-06 17 1386285 1386285 G T MYO1C Missense_Mutation p.S139Y 0.87 deleterious(0) probably_damaging(0.989) TCGA-ER-A19E-06 17 27067605 27067606 CC G NEK8 Frame_Shift_Del p.Q515Kfs*3 0.16 TCGA-ER-A19E-06 17 3118944 3118944 G A OR1A1 Silent p.L10L 0.93 TCGA-ER-A19E-06 17 38926624 38926624 C T KRT26 Missense_Mutation p.A188T 0.70 deleterious(0.02) possibly_damaging(0.89) TCGA-ER-A19E-06 17 38926625 38926625 C T KRT26 Silent p.E187E 0.69 TCGA-ER-A19E-06 17 39305735 39305735 G A KRTAP4-5 Silent p.C95C 0.71 TCGA-ER-A19E-06 17 41341720 41341720 C T NBR1 Missense_Mutation p.T199I 0.66 tolerated(0.47) benign(0.001) TCGA-ER-A19E-06 17 4391118 4391118 G A SPNS3 Missense_Mutation p.D490N 0.17 tolerated(0.06) benign(0.002) TCGA-ER-A19E-06 17 4689569 4689569 C T VMO1 Missense_Mutation p.D27N 0.30 tolerated(0.43) benign(0.022) TCGA-ER-A19E-06 17 5264870 5264870 C T RABEP1 Missense_Mutation p.S488F 0.50 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 17 56357233 56357233 G A MPO Missense_Mutation p.R131W 0.50 deleterious(0.03) benign(0.006) TCGA-ER-A19E-06 17 59112107 59112107 C T BCAS3 Missense_Mutation p.S588F 0.41 deleterious(0.01) probably_damaging(0.939) TCGA-ER-A19E-06 17 60032752 60032752 G A MED13 Missense_Mutation p.P1987S 0.30 tolerated(0.21) benign(0.026) TCGA-ER-A19E-06 17 685556 685556 G A GLOD4 5'UTR 0.73 TCGA-ER-A19E-06 17 685557 685557 G A GLOD4 5'UTR 0.82 TCGA-ER-A19E-06 17 72919182 72919182 G A USH1G 5'UTR 0.62 TCGA-ER-A19E-06 17 73266288 73266288 C T MIF4GD 5'UTR 0.42 TCGA-ER-A19E-06 17 73725384 73725384 C T ITGB4 Missense_Mutation p.S202F 0.35 deleterious(0) probably_damaging(0.987) TCGA-ER-A19E-06 17 73914148 73914148 G A FBF1 Silent p.S735S 0.23 TCGA-ER-A19E-06 17 73917558 73917558 G A FBF1 Missense_Mutation p.A522V 0.24 tolerated(0.49) benign(0.001) TCGA-ER-A19E-06 17 7578176 7578176 C T TP53 Splice_Site p.X224_splice 0.94 TCGA-ER-A19E-06 17 76415794 76415794 C G PGS1 Intron 0.39 TCGA-ER-A19E-06 18 13056304 13056304 G A CEP192 Missense_Mutation p.D1239N 0.48 deleterious(0.01) benign(0.02) TCGA-ER-A19E-06 18 28918330 28918330 G A DSG1 Missense_Mutation p.G440S 0.50 deleterious(0.01) possibly_damaging(0.899) TCGA-ER-A19E-06 18 28986336 28986336 T C DSG4 Silent p.L645L 0.67 TCGA-ER-A19E-06 18 50936947 50936947 C T DCC Nonsense_Mutation p.R1021* 0.18 TCGA-ER-A19E-06 18 61328066 61328066 C T SERPINB3 Missense_Mutation p.E64K 0.25 tolerated(0.26) benign(0.05) TCGA-ER-A19E-06 18 61564405 61564405 G A SERPINB2 Silent p.L123L 0.16 TCGA-ER-A19E-06 18 63477152 63477152 C A CDH7 Silent p.I141I 0.56 TCGA-ER-A19E-06 18 72346955 72346955 C T ZNF407 Missense_Mutation p.S1327F 0.31 deleterious(0) possibly_damaging(0.903) TCGA-ER-A19E-06 19 12692038 12692038 C - ZNF490 Frame_Shift_Del p.G284Efs*11 0.26 TCGA-ER-A19E-06 19 13476242 13476242 G A CACNA1A Missense_Mutation p.P225S 0.45 probably_damaging(0.932) TCGA-ER-A19E-06 19 14938289 14938289 G A OR7A5 Silent p.I255I 0.41 TCGA-ER-A19E-06 19 15067470 15067470 C T SLC1A6 Missense_Mutation p.M329I 0.36 tolerated(0.09) benign(0.053) TCGA-ER-A19E-06 19 16045250 16045250 C T CYP4F11 5'UTR 0.40 TCGA-ER-A19E-06 19 17339740 17339740 C T OCEL1 3'UTR 0.36 TCGA-ER-A19E-06 19 19120953 19120953 G A SUGP2 Silent p.L683L 0.36 TCGA-ER-A19E-06 19 3525944 3525944 C T FZR1 Missense_Mutation p.P50S 0.38 deleterious(0) possibly_damaging(0.768) TCGA-ER-A19E-06 19 35551309 35551309 G A HPN Silent p.L171L 0.22 TCGA-ER-A19E-06 19 36387017 36387017 G A NFKBID Silent p.L157L 0.26 TCGA-ER-A19E-06 19 36505121 36505121 C T ALKBH6 Silent p.G5G 0.49 TCGA-ER-A19E-06 19 36592979 36592979 C T WDR62 Missense_Mutation p.S1049F 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 19 3738625 3738625 G A TJP3 Missense_Mutation p.E462K 0.43 deleterious(0.01) benign(0.224) TCGA-ER-A19E-06 19 38230687 38230687 T G ZNF573 Missense_Mutation p.Q235P 0.28 tolerated(0.32) possibly_damaging(0.865) TCGA-ER-A19E-06 19 39787042 39787042 G A IFNL1 5'UTR 0.22 TCGA-ER-A19E-06 19 39884203 39884203 G A MED29 Missense_Mutation p.D117N 0.06 deleterious(0.05) possibly_damaging(0.857) TCGA-ER-A19E-06 19 40883999 40883999 C T PLD3 Silent p.F464F 0.38 TCGA-ER-A19E-06 19 42265352 42265352 G A CEACAM6 Missense_Mutation p.R207K 0.44 tolerated(0.32) benign(0.236) TCGA-ER-A19E-06 19 42265353 42265353 G A CEACAM6 Silent p.R207R 0.45 TCGA-ER-A19E-06 19 43268192 43268192 A G PSG8 Silent p.Y102Y 0.28 TCGA-ER-A19E-06 19 44738927 44738927 C T ZNF227 Missense_Mutation p.S115F 0.25 tolerated(0.11) possibly_damaging(0.691) TCGA-ER-A19E-06 19 45768122 45768122 C T MARK4 Missense_Mutation p.S149L 0.44 tolerated(0.15) benign(0.045) TCGA-ER-A19E-06 19 46195221 46195221 C T SNRPD2 5'UTR 0.35 TCGA-ER-A19E-06 19 4839218 4839218 C T PLIN3 Missense_Mutation p.E431K 0.41 deleterious(0.03) possibly_damaging(0.493) TCGA-ER-A19E-06 19 51412580 51412580 T C KLK4 Missense_Mutation p.E51G 0.49 tolerated(0.29) benign(0.002) TCGA-ER-A19E-06 19 51919175 51919175 C T SIGLEC10 Missense_Mutation p.R334Q 0.35 tolerated(0.12) benign(0.284) TCGA-ER-A19E-06 19 52023378 52023378 C T SIGLEC6 Silent p.K440K 0.31 TCGA-ER-A19E-06 19 52497018 52497018 G A ZNF615 Silent p.F448F 0.59 TCGA-ER-A19E-06 19 52919193 52919193 C T ZNF528 Missense_Mutation p.S363L 0.43 tolerated(0.12) benign(0.021) TCGA-ER-A19E-06 19 54135376 54135376 G A DPRX Missense_Mutation p.D6N 0.36 tolerated(0.07) benign(0.023) TCGA-ER-A19E-06 19 54625309 54625309 C T PRPF31 Silent p.I103I 0.36 TCGA-ER-A19E-06 19 54759924 54759924 G A LILRB5 Silent p.L213L 0.51 TCGA-ER-A19E-06 19 54782697 54782697 G A LILRB2 Missense_Mutation p.P309S 0.55 tolerated(0.16) probably_damaging(0.989) TCGA-ER-A19E-06 19 55112240 55112240 G A LILRA1 Silent p.G476G 0.53 TCGA-ER-A19E-06 19 55222108 55222108 G A AC098784.2 3'Flank 0.49 TCGA-ER-A19E-06 19 55222109 55222109 G A AC098784.2 3'Flank 0.48 TCGA-ER-A19E-06 19 55417961 55417961 G A NCR1 Missense_Mutation p.G51R 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 19 55496452 55496452 G A NLRP2 Missense_Mutation p.D690N 0.38 tolerated(0.09) possibly_damaging(0.791) TCGA-ER-A19E-06 19 55715387 55715387 C T PTPRH Missense_Mutation p.E217K 0.22 unknown(0) TCGA-ER-A19E-06 19 56368990 56368990 G A NLRP4 Intron 0.48 TCGA-ER-A19E-06 19 56467425 56467425 G A NLRP8 Missense_Mutation p.M667I 0.25 tolerated(0.2) benign(0) TCGA-ER-A19E-06 19 56733599 56733599 C G ZSCAN5A Missense_Mutation p.R279T 0.43 tolerated(0.27) benign(0.002) TCGA-ER-A19E-06 19 56952910 56952910 G A ZNF667 Missense_Mutation p.S485F 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-ER-A19E-06 19 57036825 57036825 A T ZNF471 Missense_Mutation p.E463D 0.09 deleterious(0.03) probably_damaging(0.922) TCGA-ER-A19E-06 19 57133208 57133208 C T ZNF71 Missense_Mutation p.P185S 0.52 deleterious(0) probably_damaging(0.996) TCGA-ER-A19E-06 19 57133209 57133209 C T ZNF71 Missense_Mutation p.P185L 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19E-06 19 5778627 5778627 G A CATSPERD Silent p.R779R 0.39 TCGA-ER-A19E-06 19 58152816 58152816 C T ZNF211 Missense_Mutation p.S386L 0.50 tolerated(0.78) possibly_damaging(0.636) TCGA-ER-A19E-06 19 58232711 58232711 C T ZNF671 Missense_Mutation p.R248K 0.41 tolerated(1) benign(0.001) TCGA-ER-A19E-06 19 58437907 58437907 G A ZNF418 Missense_Mutation p.H548Y 0.37 tolerated(0.05) benign(0.329) TCGA-ER-A19E-06 19 58640279 58640279 G A ZNF329 Missense_Mutation p.P198S 0.43 tolerated(0.4) benign(0.014) TCGA-ER-A19E-06 19 6919730 6919730 C T EMR1 Missense_Mutation p.P531L 0.26 deleterious(0) possibly_damaging(0.887) TCGA-ER-A19E-06 19 7987101 7987101 C T SNAPC2 Missense_Mutation p.A185V 0.32 tolerated(0.2) benign(0.025) TCGA-ER-A19E-06 19 8651601 8651601 C T ADAMTS10 Silent p.L748L 0.27 TCGA-ER-A19E-06 19 9063486 9063486 G A MUC16 Missense_Mutation p.S7987F 0.46 unknown(0) TCGA-ER-A19E-06 19 9064399 9064399 C T MUC16 Missense_Mutation p.E7683K 0.56 unknown(0) TCGA-ER-A19E-06 1 111858014 111858014 G A CHIA Missense_Mutation p.G146E 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19E-06 1 113232514 113232514 C T MOV10 Silent p.F210F 0.44 TCGA-ER-A19E-06 1 120050223 120050223 G A HSD3B1 Missense_Mutation p.E42K 0.66 tolerated(0.18) benign(0.046) TCGA-ER-A19E-06 1 12164568 12164568 G A TNFRSF8 Missense_Mutation p.G134E 0.75 tolerated(0.05) probably_damaging(1) TCGA-ER-A19E-06 1 145533463 145533463 C T ITGA10 Missense_Mutation p.S449F 0.26 deleterious(0) possibly_damaging(0.786) TCGA-ER-A19E-06 1 150259145 150259145 C T C1orf51 Missense_Mutation p.P313S 0.21 tolerated(0.13) possibly_damaging(0.848) TCGA-ER-A19E-06 1 151110270 151110270 G T SEMA6C Missense_Mutation p.H225N 0.62 deleterious(0) benign(0.216) TCGA-ER-A19E-06 1 152280668 152280668 C A FLG Missense_Mutation p.G2232W 0.27 probably_damaging(0.991) TCGA-ER-A19E-06 1 152785193 152785193 C T LCE1B Nonsense_Mutation p.Q91* 0.75 TCGA-ER-A19E-06 1 156849087 156849087 A T NTRK1 Missense_Mutation p.Q660L 0.30 deleterious(0.01) possibly_damaging(0.572) TCGA-ER-A19E-06 1 158736160 158736160 G A OR6N1 Missense_Mutation p.H105Y 0.27 deleterious(0.03) probably_damaging(0.985) TCGA-ER-A19E-06 1 159558295 159558295 G A APCS Missense_Mutation p.D157N 0.60 deleterious(0) probably_damaging(0.959) TCGA-ER-A19E-06 1 160523167 160523167 C T CD84 Missense_Mutation p.G254D 0.38 tolerated(0.59) benign(0.011) TCGA-ER-A19E-06 1 16073477 16073477 C T TMEM82 Silent p.I291I 0.29 TCGA-ER-A19E-06 1 161987262 161987262 G A OLFML2B Silent p.F158F 0.18 TCGA-ER-A19E-06 1 16736505 16736505 C G SPATA21 Missense_Mutation p.D60H 0.16 deleterious(0.04) possibly_damaging(0.789) TCGA-ER-A19E-06 1 169510779 169510779 C T F5 Silent p.Q1183Q 0.59 TCGA-ER-A19E-06 1 169565313 169565313 C T SELP Missense_Mutation p.G651R 0.61 deleterious(0) probably_damaging(0.983) TCGA-ER-A19E-06 1 171549096 171549096 C T PRRC2C Missense_Mutation p.P2466S 0.55 probably_damaging(0.998) TCGA-ER-A19E-06 1 17292503 17292503 C A CROCC Silent p.R1529R 0.28 TCGA-ER-A19E-06 1 17292504 17292504 G C CROCC Missense_Mutation p.R1529P 0.28 possibly_damaging(0.655) TCGA-ER-A19E-06 1 173593969 173593969 C T ANKRD45 Silent p.L229L 0.67 TCGA-ER-A19E-06 1 177250268 177250268 C T BRINP2 Silent p.S652S 0.64 TCGA-ER-A19E-06 1 180062821 180062821 C T CEP350 Silent p.A2527A 0.21 TCGA-ER-A19E-06 1 181767596 181767596 G A CACNA1E Missense_Mutation p.E2190K 0.53 tolerated(0.65) benign(0.401) TCGA-ER-A19E-06 1 181767712 181767712 C T CACNA1E Silent p.I2228I 0.68 TCGA-ER-A19E-06 1 184787864 184787864 C G FAM129A Missense_Mutation p.G361R 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 1 1849327 1849327 G A TMEM52 Silent p.A208A 0.53 TCGA-ER-A19E-06 1 196928254 196928254 A G CFHR2 3'UTR 0.69 TCGA-ER-A19E-06 1 197071457 197071457 G A ASPM Silent p.F2308F 0.58 TCGA-ER-A19E-06 1 207196812 207196812 C T C1orf116 Silent p.E99E 0.51 TCGA-ER-A19E-06 1 207640119 207640119 A C CR2 Silent p.R103R 0.57 TCGA-ER-A19E-06 1 209789894 209789894 C A LAMB3 Missense_Mutation p.G1102C 0.59 deleterious(0) probably_damaging(0.992) TCGA-ER-A19E-06 1 209961745 209961745 G A IRF6 3'UTR 0.65 TCGA-ER-A19E-06 1 213037186 213037186 A G FLVCR1 Silent p.T286T 0.23 TCGA-ER-A19E-06 1 21573818 21573835 GTTGAGAAAAGGCAACCA - ECE1 In_Frame_Del p.W348_N353del 0.18 TCGA-ER-A19E-06 1 216172359 216172359 T C USH2A Missense_Mutation p.Y2176C 0.17 possibly_damaging(0.5) TCGA-ER-A19E-06 1 216348772 216348772 G A USH2A Silent p.I1483I 0.67 TCGA-ER-A19E-06 1 22839521 22839521 C T ZBTB40 Missense_Mutation p.R856C 0.50 deleterious(0) possibly_damaging(0.898) TCGA-ER-A19E-06 1 228403514 228403514 C T OBSCN Silent p.I693I 0.56 TCGA-ER-A19E-06 1 228588737 228588737 C T TRIM11 Silent p.Q221Q 0.54 TCGA-ER-A19E-06 1 231059650 231059650 C G TTC13 Missense_Mutation p.W584S 0.59 deleterious(0) probably_damaging(0.999) TCGA-ER-A19E-06 1 248309128 248309128 C T OR2M5 Missense_Mutation p.H227Y 0.13 tolerated(0.11) benign(0.014) TCGA-ER-A19E-06 1 24998753 24998753 G A SRRM1 Silent p.K897K 0.36 TCGA-ER-A19E-06 1 26691633 26691633 C T ZNF683 Missense_Mutation p.G135E 0.36 tolerated(0.26) benign(0.036) TCGA-ER-A19E-06 1 27939417 27939417 C T FGR 3'UTR 0.46 TCGA-ER-A19E-06 1 28599183 28599183 T G SESN2 Missense_Mutation p.F210C 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 1 29040901 29040901 C T GMEB1 Silent p.F446F 0.47 TCGA-ER-A19E-06 1 29474868 29474868 T A SRSF4 3'UTR 0.38 TCGA-ER-A19E-06 1 29474869 29474869 A G SRSF4 3'UTR 0.37 TCGA-ER-A19E-06 1 3321339 3321339 C T PRDM16 Silent p.R307R 0.41 TCGA-ER-A19E-06 1 34666435 34666435 C T C1orf94 Missense_Mutation p.P358S 0.30 tolerated_low_confidence(0.17) benign(0.132) TCGA-ER-A19E-06 1 3683812 3683812 G A CCDC27 Missense_Mutation p.E516K 0.23 tolerated(0.08) benign(0.239) TCGA-ER-A19E-06 1 3703771 3703771 T G LRRC47 Missense_Mutation p.K240T 0.28 deleterious(0) possibly_damaging(0.697) TCGA-ER-A19E-06 1 40529910 40529910 C T CAP1 Silent p.S102S 0.53 TCGA-ER-A19E-06 1 43675567 43675567 C T WDR65 Missense_Mutation p.H637Y 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 1 45478860 45478860 T G UROD Silent p.P62P 0.61 TCGA-ER-A19E-06 1 45501879 45501879 C T ZSWIM5 Missense_Mutation p.E663K 0.52 deleterious(0) unknown(0) TCGA-ER-A19E-06 1 55172122 55172122 A G MROH7 Silent p.R1193R 0.08 TCGA-ER-A19E-06 1 55175737 55175737 G A MROH7 Nonsense_Mutation p.W1283* 0.38 TCGA-ER-A19E-06 1 57349331 57349331 G A C8A Missense_Mutation p.E278K 0.19 tolerated(0.46) benign(0.004) TCGA-ER-A19E-06 1 65243530 65243530 C T RAVER2 Missense_Mutation p.H181Y 0.54 tolerated(0.05) benign(0.049) TCGA-ER-A19E-06 1 7151398 7151398 A G CAMTA1 Missense_Mutation p.H90R 0.18 deleterious(0.01) benign(0.396) TCGA-ER-A19E-06 1 75078475 75078475 G A C1orf173 Missense_Mutation p.S340F 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 1 75805306 75805306 C T SLC44A5 Missense_Mutation p.R21K 0.25 tolerated(0.31) benign(0.01) TCGA-ER-A19E-06 1 87102500 87102500 G A RP4-651E10.4 Intron 0.48 TCGA-ER-A19E-06 1 8716354 8716354 C T RERE Translation_Start_Site p.M1? 0.54 unknown(0) TCGA-ER-A19E-06 1 92789402 92789402 T C RPAP2 Silent p.L309L 0.50 TCGA-ER-A19E-06 1 93621928 93621928 G T TMED5 Missense_Mutation p.Q134K 0.19 tolerated(0.42) benign(0.027) TCGA-ER-A19E-06 1 97547900 97547900 C T DPYD Missense_Mutation p.D965N 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 1 97700485 97700485 G A DPYD Missense_Mutation p.P789S 0.39 deleterious(0.05) possibly_damaging(0.649) TCGA-ER-A19E-06 20 1615937 1615937 C T SIRPG Missense_Mutation p.D353N 0.74 tolerated(0.18) benign(0.009) TCGA-ER-A19E-06 20 20033134 20033134 C T CRNKL1 Silent p.A112A 0.67 TCGA-ER-A19E-06 20 2843445 2843445 C T VPS16 Intron 0.83 TCGA-ER-A19E-06 20 30686836 30686836 C T HCK Missense_Mutation p.P426S 0.12 deleterious(0) probably_damaging(0.99) TCGA-ER-A19E-06 20 43385568 43385568 G A RIMS4 Missense_Mutation p.P189S 0.46 tolerated_low_confidence(0.22) benign(0.005) TCGA-ER-A19E-06 20 43723592 43723592 G A KCNS1 Silent p.S500S 0.33 TCGA-ER-A19E-06 20 44506998 44506998 C T ZSWIM3 Missense_Mutation p.R601C 0.30 tolerated(0.19) benign(0.296) TCGA-ER-A19E-06 20 46282331 46282331 C T NCOA3 3'UTR 0.43 TCGA-ER-A19E-06 20 47991004 47991004 G A KCNB1 Missense_Mutation p.P365S 0.55 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 20 47991005 47991005 G A KCNB1 Silent p.I364I 0.54 TCGA-ER-A19E-06 20 56083724 56083724 C T CTCFL Missense_Mutation p.D538N 0.30 deleterious(0.02) benign(0.33) TCGA-ER-A19E-06 20 57415482 57415482 C T RP4-806M20.3 5'Flank 0.41 TCGA-ER-A19E-06 20 57766351 57766351 C T ZNF831 Missense_Mutation p.P93S 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19E-06 20 57768817 57768817 G A ZNF831 Missense_Mutation p.E915K 0.51 tolerated(0.91) benign(0.01) TCGA-ER-A19E-06 20 58571493 58571493 T G CDH26 Intron 0.50 TCGA-ER-A19E-06 20 60318780 60318780 G A CDH4 Missense_Mutation p.E111K 0.47 tolerated(0.6) benign(0.012) TCGA-ER-A19E-06 20 9319684 9319684 G A PLCB4 Silent p.K123K 0.73 TCGA-ER-A19E-06 20 9319685 9319685 G A PLCB4 Splice_Site p.X123_splice 0.71 TCGA-ER-A19E-06 21 30934004 30934004 T C GRIK1 Missense_Mutation p.N766S 0.78 deleterious(0) probably_damaging(0.961) TCGA-ER-A19E-06 21 47532027 47532027 G A COL6A2 Missense_Mutation p.E84K 0.71 tolerated(0.19) benign(0.398) TCGA-ER-A19E-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.46 deleterious(0.01) possibly_damaging(0.461) TCGA-ER-A19E-06 22 17073303 17073303 G A CCT8L2 Silent p.V46V 0.75 TCGA-ER-A19E-06 22 23077503 23077503 C T IGLV2-18 Silent p.L94L 0.83 TCGA-ER-A19E-06 22 38245426 38245426 C T EIF3L 5'UTR 0.72 TCGA-ER-A19E-06 22 42418336 42418336 T G WBP2NL Missense_Mutation p.C164G 0.64 tolerated(0.09) benign(0.046) TCGA-ER-A19E-06 22 42418337 42418337 G T WBP2NL Missense_Mutation p.C164F 0.65 deleterious(0.03) possibly_damaging(0.696) TCGA-ER-A19E-06 22 43520119 43520119 G A BIK Missense_Mutation p.G31S 0.82 tolerated(0.06) probably_damaging(0.996) TCGA-ER-A19E-06 2 107459714 107459714 C T ST6GAL2 Silent p.G240G 0.36 TCGA-ER-A19E-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.31 tolerated(0.39) benign(0.015) TCGA-ER-A19E-06 2 113956458 113956458 C T PSD4 Silent p.S922S 0.75 TCGA-ER-A19E-06 2 125262049 125262049 G A CNTNAP5 Missense_Mutation p.G414R 0.32 deleterious(0.02) probably_damaging(1) TCGA-ER-A19E-06 2 132021517 132021517 C T POTEE Missense_Mutation p.P830L 0.30 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-ER-A19E-06 2 133175434 133175434 G A GPR39 Silent p.E273E 0.42 TCGA-ER-A19E-06 2 135596241 135596241 G A ACMSD 5'UTR 0.49 TCGA-ER-A19E-06 2 141806669 141806669 G A LRP1B Missense_Mutation p.R559C 0.29 possibly_damaging(0.689) TCGA-ER-A19E-06 2 149840163 149840163 G A KIF5C Silent p.L533L 0.31 TCGA-ER-A19E-06 2 152139408 152139408 C T NMI Missense_Mutation p.E19K 0.30 tolerated(0.15) benign(0.006) TCGA-ER-A19E-06 2 152422108 152422108 C T NEB Silent p.K6091K 0.33 TCGA-ER-A19E-06 2 153485004 153485004 C T FMNL2 Missense_Mutation p.A786V 0.41 possibly_damaging(0.682) TCGA-ER-A19E-06 2 160240122 160240122 G A BAZ2B Silent p.L1252L 0.36 TCGA-ER-A19E-06 2 16085739 16085739 C T MYCN Silent p.N305N 0.31 TCGA-ER-A19E-06 2 166179830 166179830 C T SCN2A Silent p.F612F 0.33 TCGA-ER-A19E-06 2 166805994 166805994 G A TTC21B Nonsense_Mutation p.R58* 0.34 TCGA-ER-A19E-06 2 166892656 166892656 G A SCN1A Missense_Mutation p.L1111F 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 2 167162345 167162345 G A SCN9A Missense_Mutation p.R185C 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 2 167313463 167313463 T C SCN7A Missense_Mutation p.R403G 0.57 tolerated(0.09) benign(0.035) TCGA-ER-A19E-06 2 167327215 167327215 C T SCN7A Missense_Mutation p.V192I 0.37 tolerated(0.12) benign(0.002) TCGA-ER-A19E-06 2 168103547 168103547 G A XIRP2 Nonsense_Mutation p.W1882* 0.37 TCGA-ER-A19E-06 2 168105470 168105470 C T XIRP2 Missense_Mutation p.S2523L 0.29 probably_damaging(0.992) TCGA-ER-A19E-06 2 168107797 168107797 G A XIRP2 Missense_Mutation p.V3299I 0.41 probably_damaging(0.998) TCGA-ER-A19E-06 2 169626230 169626230 T A CERS6 3'UTR 0.47 TCGA-ER-A19E-06 2 169721405 169721406 - A NOSTRIN Frame_Shift_Ins p.G542Rfs*57 0.37 TCGA-ER-A19E-06 2 17698891 17698891 C T RAD51AP2 Missense_Mutation p.M264I 0.48 tolerated(0.05) benign(0) TCGA-ER-A19E-06 2 179398114 179398114 C T TTN Missense_Mutation p.E34410K 0.43 TCGA-ER-A19E-06 2 179427846 179427846 C T TTN Silent p.E27671E 0.46 TCGA-ER-A19E-06 2 179428628 179428628 C T TTN Missense_Mutation p.E27411K 0.44 TCGA-ER-A19E-06 2 179447923 179447923 C T TTN Missense_Mutation p.M21869I 0.41 TCGA-ER-A19E-06 2 179476382 179476382 G T TTN Missense_Mutation p.D16858E 0.16 TCGA-ER-A19E-06 2 179497688 179497688 G A TTN Silent p.F14390F 0.32 TCGA-ER-A19E-06 2 179587192 179587192 C T TTN Missense_Mutation p.R7441Q 0.36 TCGA-ER-A19E-06 2 179622408 179622408 G A TTN Silent p.F3513F 0.39 TCGA-ER-A19E-06 2 179646988 179646988 G A TTN Missense_Mutation p.P1111S 0.32 TCGA-ER-A19E-06 2 185731203 185731203 C G ZNF804A Missense_Mutation p.D73E 0.14 deleterious(0) possibly_damaging(0.864) TCGA-ER-A19E-06 2 185798449 185798449 G T ZNF804A Missense_Mutation p.K125N 0.47 deleterious(0) probably_damaging(0.95) TCGA-ER-A19E-06 2 196749481 196749481 T A DNAH7 Missense_Mutation p.D1864V 0.33 deleterious(0.02) benign(0.09) TCGA-ER-A19E-06 2 201434636 201434636 C T SGOL2 Intron 0.46 TCGA-ER-A19E-06 2 201464445 201464445 G A AOX1 Missense_Mutation p.D138N 0.25 deleterious(0.04) benign(0.297) TCGA-ER-A19E-06 2 21247979 21247979 T C APOB Missense_Mutation p.I754M 0.36 benign(0.02) TCGA-ER-A19E-06 2 232196543 232196543 C T ARMC9 Silent p.D604D 0.46 TCGA-ER-A19E-06 2 234581341 234581341 G A UGT1A9 Missense_Mutation p.R254Q 0.38 deleterious(0.01) possibly_damaging(0.903) TCGA-ER-A19E-06 2 234602392 234602392 C T UGT1A6 Nonsense_Mutation p.Q248* 0.42 TCGA-ER-A19E-06 2 238242171 238242171 G A COL6A3 Missense_Mutation p.P3084S 0.40 unknown(0) TCGA-ER-A19E-06 2 238671482 238671482 C T LRRFIP1 Missense_Mutation p.L376F 0.37 tolerated(0.11) probably_damaging(0.969) TCGA-ER-A19E-06 2 26703111 26703111 C T OTOF Silent p.R624R 0.49 TCGA-ER-A19E-06 2 26864149 26864149 C T CIB4 Missense_Mutation p.E12K 0.33 deleterious(0.01) possibly_damaging(0.468) TCGA-ER-A19E-06 2 26864150 26864150 C T CIB4 Nonsense_Mutation p.W11* 0.31 TCGA-ER-A19E-06 2 29917782 29917782 C T ALK Missense_Mutation p.E296K 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-ER-A19E-06 2 37310452 37310452 C T HEATR5B Missense_Mutation p.V36I 0.41 tolerated(0.23) benign(0.036) TCGA-ER-A19E-06 2 43805682 43805682 C T THADA Missense_Mutation p.M262I 0.44 tolerated(0.08) benign(0.358) TCGA-ER-A19E-06 2 44099211 44099211 G T ABCG8 Missense_Mutation p.R354L 0.42 deleterious(0.03) benign(0.246) TCGA-ER-A19E-06 2 45801787 45801787 G C SRBD1 Missense_Mutation p.T383R 0.09 deleterious(0) benign(0.378) TCGA-ER-A19E-06 2 45801820 45801820 A G SRBD1 Missense_Mutation p.I372T 0.11 deleterious(0) probably_damaging(0.977) TCGA-ER-A19E-06 2 50573970 50573970 T G NRXN1 Intron 0.43 TCGA-ER-A19E-06 2 677331 677331 G A TMEM18 Silent p.F5F 0.25 TCGA-ER-A19E-06 2 6989818 6989818 G A CMPK2 3'UTR 0.25 TCGA-ER-A19E-06 2 70904955 70904955 C T ADD2 Missense_Mutation p.E480K 0.34 deleterious(0) probably_damaging(0.997) TCGA-ER-A19E-06 2 73646294 73646294 C T ALMS1 Missense_Mutation p.S165F 0.37 benign(0.366) TCGA-ER-A19E-06 2 75425896 75425896 C T TACR1 Nonsense_Mutation p.W55* 0.35 TCGA-ER-A19E-06 2 90229434 90229434 G T IGKV1D-42 Missense_Mutation p.S85I 0.13 deleterious(0.01) benign(0.063) TCGA-ER-A19E-06 2 99012478 99012478 C T CNGA3 Missense_Mutation p.S282F 0.46 deleterious(0.03) benign(0.192) TCGA-ER-A19E-06 3 101056363 101056363 G A SENP7 Missense_Mutation p.P824S 0.17 tolerated(0.35) possibly_damaging(0.896) TCGA-ER-A19E-06 3 109031524 109031524 C T DPPA2 Missense_Mutation p.E17K 0.31 deleterious(0.04) benign(0.143) TCGA-ER-A19E-06 3 113303575 113303575 G A SIDT1 Missense_Mutation p.R289Q 0.46 deleterious(0.02) possibly_damaging(0.473) TCGA-ER-A19E-06 3 11356956 11356956 C G ATG7 Missense_Mutation p.Q223E 0.25 tolerated(1) benign(0.002) TCGA-ER-A19E-06 3 119962558 119962558 C T GPR156 Nonsense_Mutation p.W54* 0.32 TCGA-ER-A19E-06 3 119962559 119962559 C T GPR156 Nonsense_Mutation p.W54* 0.32 TCGA-ER-A19E-06 3 121208413 121208413 C A POLQ Missense_Mutation p.C1122F 0.13 deleterious_low_confidence(0) benign(0.419) TCGA-ER-A19E-06 3 122004049 122004049 G A CASR 3'UTR 0.54 TCGA-ER-A19E-06 3 122340362 122340362 C T PARP15 Missense_Mutation p.P379S 0.24 deleterious(0.04) benign(0.012) TCGA-ER-A19E-06 3 124802787 124802787 G A SLC12A8 Missense_Mutation p.R698C 0.52 deleterious(0) probably_damaging(0.995) TCGA-ER-A19E-06 3 12660171 12660171 A G RAF1 Missense_Mutation p.F17S 0.14 tolerated_low_confidence(0.27) benign(0.009) TCGA-ER-A19E-06 3 130748540 130748540 C T NEK11 5'UTR 0.68 TCGA-ER-A19E-06 3 133347301 133347301 C G TOPBP1 Missense_Mutation p.K903N 0.73 deleterious(0.02) possibly_damaging(0.678) TCGA-ER-A19E-06 3 134267997 134267997 A C CEP63 Missense_Mutation p.E387D 0.59 deleterious(0.02) benign(0.108) TCGA-ER-A19E-06 3 1367620 1367620 A G CNTN6 Silent p.E356E 0.13 TCGA-ER-A19E-06 3 140123433 140123433 C T CLSTN2 Silent p.N154N 0.75 TCGA-ER-A19E-06 3 141632563 141632563 C T ATP1B3 Missense_Mutation p.P139L 0.69 tolerated(0.13) benign(0.02) TCGA-ER-A19E-06 3 147128015 147128015 C T ZIC1 Missense_Mutation p.P39L 0.74 deleterious(0) probably_damaging(0.969) TCGA-ER-A19E-06 3 157160467 157160467 C T PTX3 Missense_Mutation p.S282F 0.73 deleterious(0) possibly_damaging(0.822) TCGA-ER-A19E-06 3 170198755 170198755 C T SLC7A14 Missense_Mutation p.G439D 0.89 deleterious(0.05) possibly_damaging(0.762) TCGA-ER-A19E-06 3 171405323 171405323 G A PLD1 Missense_Mutation p.P531S 0.68 tolerated(0.79) benign(0) TCGA-ER-A19E-06 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.61 deleterious(0.02) probably_damaging(0.959) TCGA-ER-A19E-06 3 184290369 184290369 C T EPHB3 Silent p.S87S 0.68 TCGA-ER-A19E-06 3 33400835 33400835 C T FBXL2 Nonsense_Mutation p.Q61* 0.13 TCGA-ER-A19E-06 3 33623386 33623386 A C CLASP2 Missense_Mutation p.S759R 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-ER-A19E-06 3 36899020 36899020 G A TRANK1 Silent p.C687C 0.44 TCGA-ER-A19E-06 3 36899058 36899058 C T TRANK1 Missense_Mutation p.E675K 0.48 tolerated(0.28) benign(0.008) TCGA-ER-A19E-06 3 38348771 38348771 G A SLC22A14 Silent p.T181T 0.12 TCGA-ER-A19E-06 3 38592490 38592490 G A SCN5A Silent p.F1791F 0.20 TCGA-ER-A19E-06 3 38639243 38639243 C T SCN5A Missense_Mutation p.E747K 0.47 tolerated(0.45) benign(0.02) TCGA-ER-A19E-06 3 38962733 38962733 G A SCN11A Silent p.I242I 0.61 TCGA-ER-A19E-06 3 39119691 39119691 A G WDR48 Missense_Mutation p.I346V 0.51 tolerated(0.63) benign(0.007) TCGA-ER-A19E-06 3 47361177 47361177 T C KLHL18 Missense_Mutation p.V55A 0.57 deleterious(0) probably_damaging(0.942) TCGA-ER-A19E-06 3 47718184 47718184 G A SMARCC1 Missense_Mutation p.P554S 0.21 tolerated(1) benign(0.013) TCGA-ER-A19E-06 3 50229240 50229240 C T GNAT1 Nonsense_Mutation p.R28* 0.46 TCGA-ER-A19E-06 3 51751751 51751751 G A GRM2 Silent p.P821P 0.11 TCGA-ER-A19E-06 4 114824378 114824378 G A ARSJ Silent p.S284S 0.71 TCGA-ER-A19E-06 4 138453044 138453044 G A PCDH18 Nonsense_Mutation p.R67* 0.65 TCGA-ER-A19E-06 4 155719361 155719361 C T RBM46 Missense_Mutation p.R184C 0.72 deleterious(0) probably_damaging(0.997) TCGA-ER-A19E-06 4 164246515 164246515 C T NPY1R Silent p.K365K 0.57 TCGA-ER-A19E-06 4 170028308 170028308 G A SH3RF1 Missense_Mutation p.R730W 0.66 deleterious(0) possibly_damaging(0.77) TCGA-ER-A19E-06 4 23815923 23815923 C T PPARGC1A Missense_Mutation p.E395K 0.68 tolerated(0.69) benign(0.033) TCGA-ER-A19E-06 4 25005407 25005407 G A LGI2 Missense_Mutation p.S435F 0.73 deleterious(0) possibly_damaging(0.748) TCGA-ER-A19E-06 4 39439453 39439453 G C KLB Silent p.V481V 0.82 TCGA-ER-A19E-06 4 77247050 77247050 A G CCDC158 Silent p.Y1039Y 0.73 TCGA-ER-A19E-06 4 80328097 80328097 G A GK2 Missense_Mutation p.R420C 0.77 deleterious(0.01) possibly_damaging(0.631) TCGA-ER-A19E-06 4 85657478 85657478 G A WDFY3 Missense_Mutation p.H2254Y 0.89 tolerated(1) benign(0.001) TCGA-ER-A19E-06 4 8602914 8602914 C A CPZ Silent p.P62P 0.75 TCGA-ER-A19E-06 4 8616092 8616092 C T CPZ Missense_Mutation p.S457F 0.80 deleterious(0.02) probably_damaging(0.964) TCGA-ER-A19E-06 4 96140178 96140178 G A UNC5C Silent p.S529S 0.73 TCGA-ER-A19E-06 5 106763026 106763026 G A EFNA5 Missense_Mutation p.R104W 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 5 113831881 113831881 A G KCNN2 3'UTR 0.17 TCGA-ER-A19E-06 5 121739528 121739528 G A SNCAIP Missense_Mutation p.R33Q 0.50 deleterious(0) probably_damaging(0.99) TCGA-ER-A19E-06 5 132270135 132270135 G A AFF4 Nonsense_Mutation p.Q208* 0.21 TCGA-ER-A19E-06 5 136975560 136975560 C T KLHL3 Missense_Mutation p.R337K 0.33 deleterious(0.02) probably_damaging(0.968) TCGA-ER-A19E-06 5 138837169 138837169 C G ECSCR Missense_Mutation p.A60P 0.07 tolerated(1) benign(0.066) TCGA-ER-A19E-06 5 13901366 13901366 G A DNAH5 Missense_Mutation p.R683W 0.50 possibly_damaging(0.869) TCGA-ER-A19E-06 5 140209864 140209864 G A PCDHA6 Missense_Mutation p.G730S 0.46 tolerated_low_confidence(0.06) benign(0.226) TCGA-ER-A19E-06 5 140215448 140215448 C G PCDHA7 Missense_Mutation p.L494V 0.59 tolerated_low_confidence(0.05) probably_damaging(0.975) TCGA-ER-A19E-06 5 140308819 140308819 G A PCDHAC1 Missense_Mutation p.R781Q 0.55 deleterious(0.04) benign(0.018) TCGA-ER-A19E-06 5 140347959 140347959 C T PCDHAC2 Silent p.S536S 0.21 TCGA-ER-A19E-06 5 140474676 140474676 C A PCDHB2 Missense_Mutation p.T101K 0.41 deleterious_low_confidence(0.01) benign(0.024) TCGA-ER-A19E-06 5 140529807 140529807 G A PCDHB6 5'Flank 0.29 TCGA-ER-A19E-06 5 140596017 140596017 C T PCDHB13 Silent p.F774F 0.24 TCGA-ER-A19E-06 5 140720640 140720640 C T PCDHGA2 Missense_Mutation p.S701F 0.47 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A19E-06 5 140720641 140720641 C T PCDHGA2 Silent p.S701S 0.47 TCGA-ER-A19E-06 5 140783075 140783075 G A PCDHGA9 Missense_Mutation p.D186N 0.16 tolerated_low_confidence(0.33) benign(0.067) TCGA-ER-A19E-06 5 141242728 141242728 G A PCDH1 Intron 0.58 TCGA-ER-A19E-06 5 1422093 1422093 G A SLC6A3 Silent p.I230I 0.49 TCGA-ER-A19E-06 5 148579890 148579890 C T ABLIM3 Missense_Mutation p.P116L 0.53 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 5 149003603 149003603 C T ARHGEF37 Missense_Mutation p.A455V 0.22 tolerated(0.17) benign(0.013) TCGA-ER-A19E-06 5 149505123 149505123 G A PDGFRB Silent p.I564I 0.31 TCGA-ER-A19E-06 5 150563912 150563912 G A CCDC69 Silent p.L236L 0.46 TCGA-ER-A19E-06 5 150932750 150932750 A G FAT2 Missense_Mutation p.F1382L 0.44 probably_damaging(0.988) TCGA-ER-A19E-06 5 151271929 151271929 C T GLRA1 Missense_Mutation p.D43N 0.45 tolerated(0.17) possibly_damaging(0.841) TCGA-ER-A19E-06 5 156479463 156479463 C T HAVCR1 Silent p.T194T 0.21 TCGA-ER-A19E-06 5 156915343 156915343 C T ADAM19 Missense_Mutation p.R827K 0.28 tolerated(0.55) benign(0.013) TCGA-ER-A19E-06 5 159776749 159776749 G A C1QTNF2 Missense_Mutation p.P140L 0.39 tolerated(0.27) unknown(0) TCGA-ER-A19E-06 5 169697901 169697901 A C LCP2 Missense_Mutation p.S115R 0.26 deleterious(0) probably_damaging(0.998) TCGA-ER-A19E-06 5 179676071 179676071 G A MAPK9 Missense_Mutation p.A173V 0.48 deleterious(0) possibly_damaging(0.835) TCGA-ER-A19E-06 5 38918939 38918939 C T OSMR Intron 0.26 TCGA-ER-A19E-06 5 55256367 55256367 G A IL6ST Missense_Mutation p.S279F 0.47 deleterious(0) benign(0.178) TCGA-ER-A19E-06 5 57750407 57750407 C G PLK2 3'UTR 0.56 TCGA-ER-A19E-06 5 65088400 65088400 G T NLN Missense_Mutation p.G482V 0.56 deleterious(0.04) benign(0.293) TCGA-ER-A19E-06 5 74034150 74034150 A T GFM2 Missense_Mutation p.L438H 0.41 deleterious(0) probably_damaging(0.995) TCGA-ER-A19E-06 5 74034151 74034151 G A GFM2 Missense_Mutation p.L438F 0.40 deleterious(0.04) probably_damaging(0.99) TCGA-ER-A19E-06 5 76722338 76722338 G A PDE8B Missense_Mutation p.D873N 0.48 deleterious(0) possibly_damaging(0.455) TCGA-ER-A19E-06 5 82835756 82835756 G A VCAN Missense_Mutation p.G2312R 0.25 tolerated(1) benign(0.003) TCGA-ER-A19E-06 5 88056893 88056893 G A MEF2C Missense_Mutation p.S123F 0.25 deleterious(0.02) benign(0.003) TCGA-ER-A19E-06 6 107232046 107232046 G A MIR587 RNA 0.78 TCGA-ER-A19E-06 6 10887327 10887327 G A SYCP2L 5'UTR 0.38 TCGA-ER-A19E-06 6 128294865 128294865 C T PTPRK Silent p.V1365V 0.61 TCGA-ER-A19E-06 6 150023355 150023355 G A LATS1 5'UTR 0.80 TCGA-ER-A19E-06 6 150240468 150240468 C T RAET1G Intron 0.23 TCGA-ER-A19E-06 6 157488198 157488198 C T ARID1B Silent p.N968N 0.38 TCGA-ER-A19E-06 6 160898196 160898196 G A LPAL2 RNA 0.59 TCGA-ER-A19E-06 6 2116044 2116044 G A GMDS Silent p.P102P 0.59 TCGA-ER-A19E-06 6 24551677 24551677 G A KIAA0319 Silent p.L1009L 0.59 TCGA-ER-A19E-06 6 26091219 26091219 C T HFE Missense_Mutation p.S76F 0.17 tolerated(0.08) benign(0.155) TCGA-ER-A19E-06 6 30860240 30860240 C T DDR1 Silent p.G340G 0.79 TCGA-ER-A19E-06 6 32726754 32726754 G A HLA-DQB2 Silent p.S173S 0.71 TCGA-ER-A19E-06 6 3289998 3289998 G T SLC22A23 Nonsense_Mutation p.S438* 0.51 TCGA-ER-A19E-06 6 33144071 33144071 C T COL11A2 Missense_Mutation p.G641R 0.25 probably_damaging(0.98) TCGA-ER-A19E-06 6 33236884 33236884 C A VPS52 Missense_Mutation p.G152V 0.08 tolerated(1) benign(0.001) TCGA-ER-A19E-06 6 33264095 33264095 T C RGL2 Missense_Mutation p.I160V 0.10 tolerated(0.85) benign(0.063) TCGA-ER-A19E-06 6 38548061 38548061 C T BTBD9 Missense_Mutation p.E323K 0.62 tolerated(0.06) unknown(0) TCGA-ER-A19E-06 6 38819443 38819443 C T DNAH8 Missense_Mutation p.T1603I 0.49 probably_damaging(0.996) TCGA-ER-A19E-06 6 38854603 38854603 G T DNAH8 Nonsense_Mutation p.E2549* 0.22 TCGA-ER-A19E-06 6 38854604 38854604 A T DNAH8 Missense_Mutation p.E2549V 0.22 benign(0.116) TCGA-ER-A19E-06 6 4116158 4116158 C A ECI2 Nonsense_Mutation p.E379* 0.19 TCGA-ER-A19E-06 6 42931339 42931339 C T GNMT Silent p.F261F 0.29 TCGA-ER-A19E-06 6 43156281 43156281 G A CUL9 Missense_Mutation p.G670S 0.64 tolerated(0.38) benign(0.326) TCGA-ER-A19E-06 6 52288799 52288799 T C EFHC1 Missense_Mutation p.V40A 0.22 tolerated(0.57) benign(0.001) TCGA-ER-A19E-06 6 70647963 70647963 C T COL19A1 Missense_Mutation p.P303S 0.73 tolerated(0.11) unknown(0) TCGA-ER-A19E-06 6 72960098 72960098 A C RIMS1 Silent p.L769L 0.71 TCGA-ER-A19E-06 6 7583117 7583117 G A DSP Silent p.K1874K 0.52 TCGA-ER-A19E-06 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.71 deleterious(0) probably_damaging(0.937) TCGA-ER-A19E-06 6 96651759 96651759 C T FUT9 Missense_Mutation p.S243F 0.67 deleterious(0) probably_damaging(0.997) TCGA-ER-A19E-06 7 100349808 100349808 G A ZAN Missense_Mutation p.E694K 0.83 possibly_damaging(0.827) TCGA-ER-A19E-06 7 103136328 103136328 C T RELN Missense_Mutation p.E3071K 0.91 tolerated(0.1) benign(0.338) TCGA-ER-A19E-06 7 127254541 127254541 G T PAX4 Nonsense_Mutation p.S136* 0.24 TCGA-ER-A19E-06 7 128494538 128494538 G C FLNC Missense_Mutation p.V2267L 0.14 tolerated(0.26) benign(0.047) TCGA-ER-A19E-06 7 129104486 129104486 C T STRIP2 Silent p.I561I 0.08 TCGA-ER-A19E-06 7 129919431 129919431 C T CPA2 Missense_Mutation p.H306Y 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 7 134253003 134253003 G C AKR1B15 Missense_Mutation p.E82Q 0.17 deleterious(0.02) possibly_damaging(0.589) TCGA-ER-A19E-06 7 137237213 137237213 G T DGKI Silent p.P683P 0.19 TCGA-ER-A19E-06 7 140373218 140373218 C T ADCK2 Missense_Mutation p.P30S 0.73 tolerated_low_confidence(0.26) benign(0.004) TCGA-ER-A19E-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.86 deleterious(0) probably_damaging(0.967) TCGA-ER-A19E-06 7 141478512 141478512 A - TAS2R4 Frame_Shift_Del p.R76Gfs*24 0.15 TCGA-ER-A19E-06 7 141755487 141755487 G A MGAM Nonsense_Mutation p.W1148* 0.74 TCGA-ER-A19E-06 7 143079964 143079964 C T ZYX Missense_Mutation p.A191V 0.71 tolerated(0.22) benign(0.127) TCGA-ER-A19E-06 7 147336363 147336363 A C CNTNAP2 Missense_Mutation p.Y688S 0.26 deleterious(0) probably_damaging(0.98) TCGA-ER-A19E-06 7 150490280 150490280 G A TMEM176B Missense_Mutation p.R166C 0.78 tolerated(0.2) benign(0.002) TCGA-ER-A19E-06 7 150490296 150490296 G A TMEM176B Silent p.I160I 0.75 TCGA-ER-A19E-06 7 154379741 154379741 G A DPP6 Intron 0.78 TCGA-ER-A19E-06 7 154785460 154785460 G A PAXIP1 Missense_Mutation p.S79F 0.85 deleterious(0) probably_damaging(0.998) TCGA-ER-A19E-06 7 158663908 158663908 C T WDR60 Missense_Mutation p.L49F 0.61 tolerated(0.26) possibly_damaging(0.732) TCGA-ER-A19E-06 7 1595081 1595081 G A TMEM184A Missense_Mutation p.P14S 0.51 tolerated_low_confidence(0.2) benign(0.008) TCGA-ER-A19E-06 7 18067301 18067301 G A PRPS1L1 Silent p.F35F 0.46 TCGA-ER-A19E-06 7 20197851 20197851 C T MACC1 Silent p.R711R 0.49 TCGA-ER-A19E-06 7 25266576 25266576 C G NPVF Missense_Mutation p.V70L 0.41 tolerated(0.06) benign(0.11) TCGA-ER-A19E-06 7 30491343 30491343 G A NOD1 Missense_Mutation p.P564S 0.35 tolerated(0.13) benign(0.001) TCGA-ER-A19E-06 7 32209518 32209518 C T PDE1C Missense_Mutation p.G63R 0.33 tolerated_low_confidence(0.14) benign(0.235) TCGA-ER-A19E-06 7 34851420 34851420 C T NPSR1 Silent p.S141S 0.49 TCGA-ER-A19E-06 7 37953976 37953976 G A SFRP4 Silent p.P175P 0.39 TCGA-ER-A19E-06 7 37953977 37953977 G A SFRP4 Missense_Mutation p.P175L 0.38 tolerated(0.25) benign(0.009) TCGA-ER-A19E-06 7 38725587 38725587 C T FAM183B Missense_Mutation p.E7K 0.56 deleterious(0.05) benign(0.032) TCGA-ER-A19E-06 7 43508655 43508655 G A HECW1 Missense_Mutation p.R1017Q 0.40 tolerated(1) benign(0.003) TCGA-ER-A19E-06 7 44579081 44579081 G A NPC1L1 Silent p.F305F 0.29 TCGA-ER-A19E-06 7 45725721 45725721 T C ADCY1 Missense_Mutation p.F745S 0.28 deleterious(0) benign(0.071) TCGA-ER-A19E-06 7 55223588 55223588 G A EGFR Missense_Mutation p.E319K 0.57 tolerated(0.08) possibly_damaging(0.671) TCGA-ER-A19E-06 7 590235 590235 C T PRKAR1B Silent p.E326E 0.45 TCGA-ER-A19E-06 7 65706180 65706180 C T TPST1 Silent p.F256F 0.58 TCGA-ER-A19E-06 7 75191420 75191420 G A HIP1 Missense_Mutation p.P359S 0.24 tolerated(0.08) possibly_damaging(0.885) TCGA-ER-A19E-06 7 87160636 87160636 T C ABCB1 Missense_Mutation p.K887E 0.16 deleterious(0) possibly_damaging(0.511) TCGA-ER-A19E-06 7 87179492 87179492 C A ABCB1 Missense_Mutation p.G449W 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 7 87516699 87516699 T G DBF4 Missense_Mutation p.I169S 0.26 deleterious(0) probably_damaging(0.995) TCGA-ER-A19E-06 7 87762205 87762205 G A ADAM22 Missense_Mutation p.R339Q 0.20 deleterious(0.05) probably_damaging(0.916) TCGA-ER-A19E-06 7 92730948 92730948 C T SAMD9 Missense_Mutation p.R1488K 0.83 deleterious(0.02) benign(0) TCGA-ER-A19E-06 7 92730949 92730949 T A SAMD9 Nonsense_Mutation p.R1488* 0.81 TCGA-ER-A19E-06 7 92731141 92731141 G T SAMD9 Missense_Mutation p.L1424M 0.10 tolerated(0.23) benign(0.02) TCGA-ER-A19E-06 8 10465158 10465158 G A RP1L1 Silent p.A2150A 0.53 TCGA-ER-A19E-06 8 108334269 108334269 G A ANGPT1 Silent p.G221G 0.44 TCGA-ER-A19E-06 8 110535117 110535117 G A PKHD1L1 Missense_Mutation p.D4110N 0.27 tolerated(0.4) benign(0.002) TCGA-ER-A19E-06 8 113303816 113303816 C T CSMD3 Missense_Mutation p.G2966E 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 8 128428576 128428576 G A POU5F1B Silent p.Q155Q 0.62 TCGA-ER-A19E-06 8 128429055 128429055 C T POU5F1B Missense_Mutation p.P315L 0.38 tolerated(0.06) possibly_damaging(0.594) TCGA-ER-A19E-06 8 139164653 139164653 C G FAM135B Missense_Mutation p.E689Q 0.50 deleterious(0) possibly_damaging(0.899) TCGA-ER-A19E-06 8 139190821 139190821 G A FAM135B Missense_Mutation p.S329F 0.41 deleterious(0) possibly_damaging(0.811) TCGA-ER-A19E-06 8 144945296 144945296 C T EPPK1 Missense_Mutation p.G709D 0.19 benign(0.005) TCGA-ER-A19E-06 8 145006632 145006632 T A PLEC Missense_Mutation p.E775V 0.49 unknown(0) TCGA-ER-A19E-06 8 2857542 2857542 C T CSMD1 Missense_Mutation p.G2714E 0.34 probably_damaging(1) TCGA-ER-A19E-06 8 30210826 30210826 G A TUBBP1 RNA 0.80 TCGA-ER-A19E-06 8 3166002 3166002 C T CSMD1 Missense_Mutation p.D1219N 0.56 benign(0.018) TCGA-ER-A19E-06 8 39872818 39872818 C T IDO2 Silent p.F320F 0.32 TCGA-ER-A19E-06 8 40532280 40532280 C T ZMAT4 Missense_Mutation p.A174T 0.48 tolerated(0.22) benign(0.06) TCGA-ER-A19E-06 8 55540301 55540301 G T RP1 Missense_Mutation p.G1287C 0.21 deleterious(0.02) benign(0.179) TCGA-ER-A19E-06 8 56863018 56863018 G T LYN Missense_Mutation p.E95D 0.27 tolerated(0.42) benign(0.09) TCGA-ER-A19E-06 8 71069053 71069053 G A NCOA2 Missense_Mutation p.P516L 0.24 deleterious(0) probably_damaging(0.989) TCGA-ER-A19E-06 8 91081277 91081277 C T CALB1 Nonsense_Mutation p.W107* 0.48 TCGA-ER-A19E-06 8 95174318 95174318 G A CDH17 Missense_Mutation p.S452L 0.57 deleterious(0.02) probably_damaging(0.951) TCGA-ER-A19E-06 9 104238636 104238636 G A TMEM246 Missense_Mutation p.H247Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-ER-A19E-06 9 117666367 117666367 C T TNFSF8 Silent p.T183T 0.52 TCGA-ER-A19E-06 9 121929239 121929239 C T BRINP1 3'UTR 0.62 TCGA-ER-A19E-06 9 124535048 124535048 C T DAB2IP Silent p.S719S 0.50 TCGA-ER-A19E-06 9 129453154 129453154 C T LMX1B Silent p.I122I 0.46 TCGA-ER-A19E-06 9 130263419 130263419 G A LRSAM1 Silent p.R681R 0.38 TCGA-ER-A19E-06 9 131745239 131745239 C T NUP188 Silent p.I576I 0.43 TCGA-ER-A19E-06 9 133942459 133942459 C T LAMC3 Silent p.A820A 0.42 TCGA-ER-A19E-06 9 138516104 138516104 C T GLT6D1 Missense_Mutation p.D224N 0.37 deleterious(0) probably_damaging(0.989) TCGA-ER-A19E-06 9 139743831 139743831 G T PHPT1 5'UTR 0.50 TCGA-ER-A19E-06 9 16437419 16437419 A C BNC2 Missense_Mutation p.V258G 0.81 deleterious(0) probably_damaging(0.998) TCGA-ER-A19E-06 9 22451399 22451399 A T DMRTA1 Missense_Mutation p.K335M 0.65 deleterious(0) probably_damaging(0.967) TCGA-ER-A19E-06 9 32632950 32632950 C T TAF1L Missense_Mutation p.M876I 0.65 tolerated(0.09) benign(0.063) TCGA-ER-A19E-06 9 34660894 34660894 G A IL11RA Missense_Mutation p.G405R 0.29 deleterious(0.04) benign(0.082) TCGA-ER-A19E-06 9 35092248 35092248 G A PIGO Missense_Mutation p.P546S 0.29 tolerated(0.76) benign(0.109) TCGA-ER-A19E-06 9 5072578 5072579 AG - JAK2 Frame_Shift_Del p.E577Sfs*8 0.36 TCGA-ER-A19E-06 9 71509440 71509440 G A PIP5K1B Silent p.E219E 0.37 TCGA-ER-A19E-06 9 78682956 78682956 G A PCSK5 Missense_Mutation p.G240R 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A19E-06 9 79318669 79318669 C T PRUNE2 Silent p.T2620T 0.54 TCGA-ER-A19E-06 9 93375440 93375440 G A DIRAS2 3'UTR 0.58 TCGA-ER-A19E-06 9 96021501 96021501 C T WNK2 Missense_Mutation p.P891S 0.18 probably_damaging(0.995) TCGA-ER-A19E-06 X 13587946 13587946 G A EGFL6 5'UTR 0.79 TCGA-ER-A19E-06 X 153069032 153069032 C T PDZD4 Missense_Mutation p.E696K 0.62 deleterious(0) probably_damaging(0.989) TCGA-ER-A19E-06 X 153219097 153219097 G A HCFC1 Silent p.T1486T 0.46 TCGA-ER-A19E-06 X 3242384 3242384 C T MXRA5 Missense_Mutation p.A448T 0.83 deleterious(0.03) probably_damaging(0.976) TCGA-ER-A19E-06 X 3592739 3592739 C A PRKX Missense_Mutation p.V79L 0.78 deleterious(0.04) benign(0.02) TCGA-ER-A19E-06 X 3592740 3592740 C T PRKX Silent p.K78K 0.79 TCGA-ER-A19E-06 X 36117931 36117931 G A CHDC2 Missense_Mutation p.E263K 0.71 deleterious(0.03) benign(0.4) TCGA-ER-A19E-06 X 51486787 51486787 C T GSPT2 Missense_Mutation p.S22F 0.68 deleterious_low_confidence(0.01) benign(0.025) TCGA-ER-A19E-06 X 70608165 70608165 C T TAF1 Missense_Mutation p.P856S 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A19E-06 X 71840574 71840574 C T PHKA1 Splice_Site p.X713_splice 0.60 TCGA-ER-A19E-06 X 76938144 76938144 C T ATRX Silent p.L868L 0.28 TCGA-ER-A19E-06 X 84537296 84537296 G A POF1B Silent p.G559G 0.39 TCGA-ER-A19E-06 X 84560826 84560826 C T POF1B Missense_Mutation p.E470K 0.58 deleterious(0.04) benign(0.008) TCGA-ER-A19F-06 10 104176224 104176224 G A PSD Missense_Mutation p.S191F 0.33 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-ER-A19F-06 10 105362473 105362473 G A SH3PXD2A Silent p.T806T 0.39 TCGA-ER-A19F-06 10 105727572 105727572 C A SLK Missense_Mutation p.H23Q 0.45 deleterious(0) possibly_damaging(0.767) TCGA-ER-A19F-06 10 116049017 116049017 G A VWA2 Missense_Mutation p.G631S 0.28 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 10 118202572 118202572 C T PNLIPRP3 Silent p.I70I 0.64 TCGA-ER-A19F-06 10 123971070 123971070 C T TACC2 Missense_Mutation p.S2377F 0.45 probably_damaging(0.995) TCGA-ER-A19F-06 10 124672372 124672372 G A FAM24A Missense_Mutation p.E74K 0.50 deleterious(0.05) possibly_damaging(0.636) TCGA-ER-A19F-06 10 124909315 124909315 C T HMX2 Silent p.S166S 0.34 TCGA-ER-A19F-06 10 125639769 125639769 C T CPXM2 Missense_Mutation p.D121N 0.40 tolerated(0.17) benign(0.028) TCGA-ER-A19F-06 10 1262904 1262904 C T ADARB2 Missense_Mutation p.D557N 0.35 deleterious(0.01) benign(0.28) TCGA-ER-A19F-06 10 126523138 126523138 G A FAM175B Silent p.R282R 0.44 TCGA-ER-A19F-06 10 127520013 127520013 C T BCCIP Nonsense_Mutation p.Q146* 0.39 TCGA-ER-A19F-06 10 12867699 12867699 T G CAMK1D Intron 0.23 TCGA-ER-A19F-06 10 13323103 13323103 G A PHYH Missense_Mutation p.S279F 0.30 deleterious(0) probably_damaging(0.977) TCGA-ER-A19F-06 10 13656021 13656021 C T PRPF18 Missense_Mutation p.P243S 0.43 tolerated(0.18) benign(0.054) TCGA-ER-A19F-06 10 16982135 16982135 G A CUBN Missense_Mutation p.S1815F 0.38 deleterious(0.05) benign(0.049) TCGA-ER-A19F-06 10 26459434 26459434 G A MYO3A Missense_Mutation p.E1122K 0.36 tolerated(0.24) benign(0.006) TCGA-ER-A19F-06 10 26463421 26463421 G A MYO3A Missense_Mutation p.D1410N 0.34 tolerated_low_confidence(0.38) benign(0.001) TCGA-ER-A19F-06 10 28023534 28023534 G A MKX Missense_Mutation p.S230F 0.39 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 10 28224036 28224036 G A ARMC4 Nonsense_Mutation p.Q800* 0.46 TCGA-ER-A19F-06 10 28409259 28409259 C T MPP7 Missense_Mutation p.E251K 0.29 deleterious(0) possibly_damaging(0.783) TCGA-ER-A19F-06 10 30318274 30318274 T C KIAA1462 Missense_Mutation p.N268S 0.44 tolerated(0.41) benign(0.012) TCGA-ER-A19F-06 10 37438604 37438604 C T ANKRD30A Silent p.F467F 0.42 TCGA-ER-A19F-06 10 37454074 37454074 G A ANKRD30A Nonsense_Mutation p.W629* 0.38 TCGA-ER-A19F-06 10 45642855 45642855 C T RP11-445N18.7 RNA 0.54 TCGA-ER-A19F-06 10 45644185 45644185 G A RP11-445N18.7 RNA 0.28 TCGA-ER-A19F-06 10 47087533 47087533 G A NPY4R Silent p.K250K 0.11 TCGA-ER-A19F-06 10 48387869 48387869 G A RBP3 Silent p.I1003I 0.48 TCGA-ER-A19F-06 10 49386156 49386156 G A FRMPD2 Silent p.I943I 0.36 TCGA-ER-A19F-06 10 49400818 49400818 G A FRMPD2 Nonsense_Mutation p.Q692* 0.49 TCGA-ER-A19F-06 10 49444536 49444536 C T FRMPD2 Missense_Mutation p.G328R 0.45 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 10 49444537 49444537 C T FRMPD2 Silent p.P327P 0.42 TCGA-ER-A19F-06 10 50916707 50916707 G A C10orf53 3'UTR 0.47 TCGA-ER-A19F-06 10 5144346 5144346 G A AKR1C3 Silent p.S208S 0.38 TCGA-ER-A19F-06 10 51464783 51464783 G A AGAP7 Missense_Mutation p.P558L 0.23 deleterious(0) possibly_damaging(0.459) TCGA-ER-A19F-06 10 5567427 5567427 C T CALML3 Missense_Mutation p.R127W 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.571) TCGA-ER-A19F-06 10 5815815 5815815 G A GDI2 Missense_Mutation p.S270F 0.28 deleterious(0.01) benign(0.193) TCGA-ER-A19F-06 10 60273023 60273023 C T BICC1 Silent p.T40T 0.37 TCGA-ER-A19F-06 10 60562907 60562907 C T BICC1 Missense_Mutation p.P696S 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19F-06 10 61955965 61955965 C G ANK3 Missense_Mutation p.D609H 0.41 probably_damaging(1) TCGA-ER-A19F-06 10 6553059 6553059 G A PRKCQ Silent p.I72I 0.45 TCGA-ER-A19F-06 10 70645062 70645062 G A STOX1 Missense_Mutation p.G504R 0.27 tolerated(0.48) benign(0.024) TCGA-ER-A19F-06 10 70980130 70980130 C T HKDC1 5'UTR 0.39 TCGA-ER-A19F-06 10 71705454 71705454 G A COL13A1 Missense_Mutation p.G655R 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 10 73048424 73048424 G A UNC5B Missense_Mutation p.G334E 0.47 deleterious(0.02) probably_damaging(1) TCGA-ER-A19F-06 10 74833576 74833576 G A P4HA1 Missense_Mutation p.T29I 0.42 deleterious(0.01) possibly_damaging(0.522) TCGA-ER-A19F-06 10 76789951 76789951 C T KAT6B Missense_Mutation p.A1790V 0.51 benign(0.254) TCGA-ER-A19F-06 10 79739921 79739921 G A POLR3A Silent p.F1334F 0.41 TCGA-ER-A19F-06 10 81701243 81701243 C T SFTPD Missense_Mutation p.G193E 0.27 deleterious(0.03) probably_damaging(1) TCGA-ER-A19F-06 10 87484319 87484319 C T GRID1 Missense_Mutation p.E550K 0.42 tolerated(0.64) probably_damaging(0.998) TCGA-ER-A19F-06 10 90427426 90427426 A T LIPF Missense_Mutation p.K79I 0.43 tolerated(0.09) benign(0.004) TCGA-ER-A19F-06 10 93582121 93582121 T C TNKS2 Splice_Site p.X265_splice 0.43 TCGA-ER-A19F-06 10 95372844 95372844 C T PDE6C Missense_Mutation p.S121F 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 11 101374881 101374881 C T TRPC6 Silent p.R273R 0.36 TCGA-ER-A19F-06 11 1017853 1017853 T C MUC6 Missense_Mutation p.T1650A 0.04 unknown(0) TCGA-ER-A19F-06 11 102207520 102207520 G A BIRC3 Missense_Mutation p.E537K 0.44 tolerated(0.1) benign(0.242) TCGA-ER-A19F-06 11 107299736 107299736 G A CWF19L2 Missense_Mutation p.P408S 0.74 deleterious(0.04) benign(0.356) TCGA-ER-A19F-06 11 118039345 118039345 G A SCN2B Silent p.S64S 0.70 TCGA-ER-A19F-06 11 123601466 123601466 G A ZNF202 Missense_Mutation p.T44I 0.67 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A19F-06 11 123847640 123847640 G A OR10S1 Silent p.S253S 0.76 TCGA-ER-A19F-06 11 123886880 123886880 T G OR10G4 Missense_Mutation p.V200G 0.63 deleterious(0) possibly_damaging(0.697) TCGA-ER-A19F-06 11 133801030 133801030 C T IGSF9B Splice_Site p.X457_splice 0.34 TCGA-ER-A19F-06 11 1432751 1432751 G A BRSK2 Silent p.G39G 0.85 TCGA-ER-A19F-06 11 16071335 16071335 G A SOX6 Silent p.P467P 0.89 TCGA-ER-A19F-06 11 18730970 18730970 C T IGSF22 Missense_Mutation p.E988K 0.80 deleterious(0.01) probably_damaging(0.99) TCGA-ER-A19F-06 11 18763942 18763942 C T PTPN5 Missense_Mutation p.E198K 0.80 deleterious(0.03) possibly_damaging(0.867) TCGA-ER-A19F-06 11 26681885 26681885 G A ANO3 Missense_Mutation p.R947Q 0.86 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A19F-06 11 32663547 32663547 C T CCDC73 Missense_Mutation p.E341K 0.29 deleterious(0.02) possibly_damaging(0.903) TCGA-ER-A19F-06 11 35457605 35457605 G A PAMR1 Silent p.A410A 0.87 TCGA-ER-A19F-06 11 396916 396916 G A PKP3 Missense_Mutation p.G139R 0.92 deleterious(0.04) benign(0.135) TCGA-ER-A19F-06 11 40137645 40137646 - T LRRC4C Frame_Shift_Ins p.N66Kfs*4 0.56 TCGA-ER-A19F-06 11 4790701 4790701 C T OR51F1 Silent p.L149L 0.83 TCGA-ER-A19F-06 11 48177548 48177548 C T PTPRJ Silent p.S1105S 0.37 TCGA-ER-A19F-06 11 48239049 48239049 G A OR4B1 Missense_Mutation p.G230R 0.38 deleterious(0) probably_damaging(0.994) TCGA-ER-A19F-06 11 4825248 4825248 C T OR52R1 Missense_Mutation p.M121I 0.77 deleterious(0) probably_damaging(0.993) TCGA-ER-A19F-06 11 49831850 49831850 G A RP11-707M1.1 RNA 0.52 TCGA-ER-A19F-06 11 49831858 49831858 C T RP11-707M1.1 RNA 0.43 TCGA-ER-A19F-06 11 51411699 51411699 C T OR4A5 Missense_Mutation p.A233T 0.40 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-ER-A19F-06 11 533312 533321 GGGTCCCAGA - HRAS Intron 0.75 TCGA-ER-A19F-06 11 5411135 5411135 C T OR51M1 Silent p.I169I 0.85 TCGA-ER-A19F-06 11 5510223 5510223 C T OR52D1 Missense_Mutation p.S96F 0.82 deleterious(0.02) possibly_damaging(0.83) TCGA-ER-A19F-06 11 55541558 55541558 C T OR5D13 Silent p.I215I 0.30 TCGA-ER-A19F-06 11 55681498 55681498 G A OR5W2 Silent p.L187L 0.41 TCGA-ER-A19F-06 11 55861530 55861530 C T OR8I2 Silent p.I249I 0.22 TCGA-ER-A19F-06 11 55872560 55872560 C T OR8H2 Silent p.I14I 0.45 TCGA-ER-A19F-06 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.51 TCGA-ER-A19F-06 11 55890756 55890756 G T OR8H3 Missense_Mutation p.R303I 0.28 deleterious(0) possibly_damaging(0.684) TCGA-ER-A19F-06 11 56043769 56043769 G A OR5T1 Missense_Mutation p.E219K 0.38 deleterious(0.01) benign(0.16) TCGA-ER-A19F-06 11 56143797 56143797 G A OR8U1 Missense_Mutation p.G233E 0.57 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 11 56380880 56380880 C T OR5M1 Silent p.A33A 0.39 TCGA-ER-A19F-06 11 57135900 57135900 C A P2RX3 Missense_Mutation p.S331Y 0.38 deleterious(0.03) probably_damaging(1) TCGA-ER-A19F-06 11 59837105 59837105 C T MS4A3 Missense_Mutation p.T191I 0.46 tolerated(0.51) benign(0.002) TCGA-ER-A19F-06 11 60068515 60068515 A G MS4A4A Silent p.R124R 0.42 TCGA-ER-A19F-06 11 61631244 61631244 C T FADS2 Silent p.F381F 0.32 TCGA-ER-A19F-06 11 61631251 61631251 G T FADS2 Nonsense_Mutation p.E384* 0.45 TCGA-ER-A19F-06 11 63071643 63071643 C T SLC22A10 Missense_Mutation p.S450F 0.43 deleterious(0.02) possibly_damaging(0.694) TCGA-ER-A19F-06 11 64112035 64112035 G A CCDC88B Silent p.T674T 0.71 TCGA-ER-A19F-06 11 64112036 64112036 G A CCDC88B Missense_Mutation p.G675R 0.71 tolerated_low_confidence(0.4) benign(0.003) TCGA-ER-A19F-06 11 64603243 64603243 G A CDC42BPG Silent p.S583S 0.32 TCGA-ER-A19F-06 11 64622919 64622919 G A EHD1 Missense_Mutation p.P319S 0.40 deleterious(0) probably_damaging(0.987) TCGA-ER-A19F-06 11 64938873 64938873 C T SPDYC Silent p.T34T 0.36 TCGA-ER-A19F-06 11 64938874 64938874 C T SPDYC Nonsense_Mutation p.Q35* 0.36 TCGA-ER-A19F-06 11 65046372 65046372 G A POLA2 Silent p.Q211Q 0.37 TCGA-ER-A19F-06 11 65088864 65088864 G A CDC42EP2 Silent p.P165P 0.57 TCGA-ER-A19F-06 11 65320351 65320351 G A LTBP3 Missense_Mutation p.P389L 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-ER-A19F-06 11 66288844 66288844 G A BBS1 Missense_Mutation p.R276K 0.38 tolerated(1) benign(0.001) TCGA-ER-A19F-06 11 66323701 66323701 G A CTD-3074O7.2 3'Flank 0.38 TCGA-ER-A19F-06 11 66323702 66323702 G A CTD-3074O7.2 3'Flank 0.37 TCGA-ER-A19F-06 11 67047159 67047159 G A ADRBK1 Silent p.P143P 0.42 TCGA-ER-A19F-06 11 67075030 67075030 C T SSH3 Nonsense_Mutation p.Q205* 0.35 TCGA-ER-A19F-06 11 74904478 74904478 C T SLCO2B1 Silent p.L431L 0.44 TCGA-ER-A19F-06 11 85375599 85375599 C T CREBZF Silent p.L107L 0.47 TCGA-ER-A19F-06 11 94300761 94300761 C T PIWIL4 Missense_Mutation p.A26V 0.54 tolerated(0.23) benign(0.003) TCGA-ER-A19F-06 11 95826061 95826061 G A MAML2 Silent p.G378G 0.39 TCGA-ER-A19F-06 12 100926345 100926345 G A NR1H4 Silent p.R195R 0.86 TCGA-ER-A19F-06 12 10560243 10560243 C T KLRC4 3'UTR 0.84 TCGA-ER-A19F-06 12 11183590 11183590 G A TAS2R31 Silent p.N115N 0.49 TCGA-ER-A19F-06 12 111990746 111990746 A G ATXN2 Silent p.G288G 0.76 TCGA-ER-A19F-06 12 11461597 11461597 C T PRB4 Missense_Mutation p.G107E 0.58 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19F-06 12 11461723 11461723 C T PRB4 Missense_Mutation p.G65E 0.12 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19F-06 12 121000873 121000873 G A RNF10 Silent p.K418K 0.85 TCGA-ER-A19F-06 12 12815020 12815020 G A GPR19 Silent p.F121F 0.75 TCGA-ER-A19F-06 12 129558485 129558485 C T TMEM132D Missense_Mutation p.D1079N 0.87 deleterious(0.02) benign(0.251) TCGA-ER-A19F-06 12 13219709 13219709 C T KIAA1467 Silent p.L330L 0.87 TCGA-ER-A19F-06 12 133225520 133225520 G A POLE Missense_Mutation p.R1382C 0.86 deleterious(0) possibly_damaging(0.726) TCGA-ER-A19F-06 12 13366698 13366698 T G EMP1 Missense_Mutation p.F87V 0.85 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 12 13768519 13768519 T C GRIN2B Missense_Mutation p.K470E 0.83 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 12 18644400 18644400 G A PIK3C2G Missense_Mutation p.E860K 0.88 tolerated(0.15) probably_damaging(0.985) TCGA-ER-A19F-06 12 18891566 18891566 C T CAPZA3 Silent p.L122L 0.89 TCGA-ER-A19F-06 12 18891882 18891882 G A CAPZA3 Missense_Mutation p.R227K 0.76 tolerated(1) benign(0.03) TCGA-ER-A19F-06 12 20858948 20858948 G A SLCO1C1 Missense_Mutation p.G113R 0.81 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 12 21172218 21172218 G A SLCO1B7 Missense_Mutation p.G41E 0.75 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 12 25232684 25232684 G A LRMP Silent p.T77T 0.76 TCGA-ER-A19F-06 12 25261507 25261507 G T CASC1 Missense_Mutation p.S715Y 0.09 deleterious(0) possibly_damaging(0.894) TCGA-ER-A19F-06 12 30883181 30883181 G A CAPRIN2 Missense_Mutation p.P366S 0.88 tolerated(0.37) probably_damaging(0.999) TCGA-ER-A19F-06 12 319086 319086 C T SLC6A12 Missense_Mutation p.E23K 0.41 tolerated(0.82) benign(0.003) TCGA-ER-A19F-06 12 33030884 33030884 C T PKP2 Silent p.V310V 0.94 TCGA-ER-A19F-06 12 3702313 3702313 G A PRMT8 Missense_Mutation p.E384K 0.80 tolerated(0.13) benign(0.065) TCGA-ER-A19F-06 12 47629825 47629825 C T PCED1B Missense_Mutation p.H327Y 0.84 tolerated(1) benign(0) TCGA-ER-A19F-06 12 49165664 49165664 G A ADCY6 Silent p.F960F 0.87 TCGA-ER-A19F-06 12 50368136 50368136 G A AQP6 Silent p.A144A 0.84 TCGA-ER-A19F-06 12 51717903 51717903 G A BIN2 5'UTR 0.79 TCGA-ER-A19F-06 12 53722750 53722750 C T SP7 Nonsense_Mutation p.W159* 0.79 TCGA-ER-A19F-06 12 53879190 53879190 C T MAP3K12 Silent p.K297K 0.89 TCGA-ER-A19F-06 12 54856432 54856432 C T GTSF1 Missense_Mutation p.D108N 0.82 deleterious(0) probably_damaging(0.986) TCGA-ER-A19F-06 12 57178749 57178749 G A HSD17B6 Missense_Mutation p.E229K 0.85 tolerated(0.37) benign(0.001) TCGA-ER-A19F-06 12 66725067 66725067 C T HELB Missense_Mutation p.A935V 0.88 deleterious(0) possibly_damaging(0.718) TCGA-ER-A19F-06 12 68551714 68551714 G A IFNG Silent p.F115F 0.81 TCGA-ER-A19F-06 12 6939701 6939701 T C LEPREL2 Missense_Mutation p.L278P 0.80 deleterious(0) probably_damaging(0.986) TCGA-ER-A19F-06 12 70091527 70091527 G A BEST3 Missense_Mutation p.H18Y 0.82 tolerated(0.22) benign(0.115) TCGA-ER-A19F-06 12 95694281 95694281 G A VEZT Silent p.Q724Q 0.79 TCGA-ER-A19F-06 13 101717857 101717857 C T NALCN Silent p.L1501L 0.44 TCGA-ER-A19F-06 13 110822958 110822958 G A COL4A1 Silent p.S1226S 0.36 TCGA-ER-A19F-06 13 20048054 20048054 C T TPTE2 Missense_Mutation p.G131E 0.35 deleterious(0) probably_damaging(0.967) TCGA-ER-A19F-06 13 20716951 20716951 G A GJA3 Silent p.F159F 0.44 TCGA-ER-A19F-06 13 21179174 21179174 G A IFT88 Missense_Mutation p.D357N 0.37 deleterious(0.04) probably_damaging(0.919) TCGA-ER-A19F-06 13 21296107 21296107 C T IL17D 3'UTR 0.42 TCGA-ER-A19F-06 13 22275499 22275499 C T FGF9 Silent p.F184F 0.28 TCGA-ER-A19F-06 13 25077796 25077796 G A PARP4 Missense_Mutation p.S40L 0.32 tolerated(0.81) benign(0.006) TCGA-ER-A19F-06 13 25418818 25418818 G A RNF17 Missense_Mutation p.E954K 0.45 tolerated(0.48) probably_damaging(0.973) TCGA-ER-A19F-06 13 25826045 25826045 G A MTMR6 Missense_Mutation p.S475F 0.46 deleterious(0.01) benign(0.094) TCGA-ER-A19F-06 13 28622539 28622539 C T FLT3 Missense_Mutation p.E360K 0.49 tolerated(0.1) benign(0.069) TCGA-ER-A19F-06 13 32903615 32903615 C T BRCA2 Missense_Mutation p.H223Y 0.55 deleterious(0) benign(0.072) TCGA-ER-A19F-06 13 33703582 33703582 G A STARD13 Missense_Mutation p.S411F 0.44 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 13 42729831 42729831 C T DGKH Missense_Mutation p.S173L 0.48 deleterious(0.04) possibly_damaging(0.656) TCGA-ER-A19F-06 13 43180868 43180868 G A TNFSF11 Missense_Mutation p.M256I 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19F-06 13 45563205 45563205 A G NUFIP1 Missense_Mutation p.S123P 0.36 tolerated(0.32) benign(0.006) TCGA-ER-A19F-06 13 45594490 45594490 C T GPALPP1 Missense_Mutation p.S244F 0.37 tolerated(0.59) benign(0.003) TCGA-ER-A19F-06 13 45594491 45594491 C T GPALPP1 Silent p.S244S 0.38 TCGA-ER-A19F-06 13 46917580 46917580 C T KIAA0226L Silent p.R643R 0.24 TCGA-ER-A19F-06 13 52440032 52440032 G A CCDC70 Missense_Mutation p.G173E 0.37 tolerated(1) benign(0) TCGA-ER-A19F-06 13 95273347 95273347 C T GPR180 Missense_Mutation p.S251F 0.40 deleterious(0) probably_damaging(0.966) TCGA-ER-A19F-06 14 100613156 100613156 G A DEGS2 Missense_Mutation p.S305F 0.43 deleterious(0.01) benign(0.013) TCGA-ER-A19F-06 14 103574820 103574820 C T EXOC3L4 Silent p.L648L 0.35 TCGA-ER-A19F-06 14 104641757 104641757 C T KIF26A Missense_Mutation p.P878S 0.60 tolerated(0.11) benign(0.003) TCGA-ER-A19F-06 14 106780696 106780696 C T IGHV4-28 Nonsense_Mutation p.W56* 0.37 TCGA-ER-A19F-06 14 107131273 107131273 G A IGHV3-66 Silent p.S36S 0.43 TCGA-ER-A19F-06 14 20295867 20295867 C T OR4N2 Missense_Mutation p.S87F 0.22 tolerated(0.09) benign(0.013) TCGA-ER-A19F-06 14 20344554 20344554 G A OR4K2 Missense_Mutation p.S43N 0.23 deleterious(0.01) benign(0.123) TCGA-ER-A19F-06 14 20344685 20344685 A C OR4K2 Missense_Mutation p.T87P 0.21 tolerated(0.13) benign(0.24) TCGA-ER-A19F-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.28 TCGA-ER-A19F-06 14 20586390 20586390 C T OR4K17 Silent p.I275I 0.45 TCGA-ER-A19F-06 14 20873656 20873656 T C TEP1 Missense_Mutation p.E275G 0.43 tolerated(0.08) possibly_damaging(0.688) TCGA-ER-A19F-06 14 22434032 22434032 G A TRAV12-3 Missense_Mutation p.D29N 0.60 tolerated(0.36) benign(0.001) TCGA-ER-A19F-06 14 23020935 23020935 G A AE000662.92 5'Flank 0.39 TCGA-ER-A19F-06 14 23826407 23826407 G A EFS 3'UTR 0.25 TCGA-ER-A19F-06 14 23862632 23862632 G A MYH6 Silent p.A1008A 0.44 TCGA-ER-A19F-06 14 23886133 23886133 G A MYH7 Nonsense_Mutation p.R1530* 0.45 TCGA-ER-A19F-06 14 23938907 23938907 G A NGDN 5'UTR 0.38 TCGA-ER-A19F-06 14 24884778 24884778 C T NYNRIN Missense_Mutation p.L1275F 0.56 deleterious_low_confidence(0.03) benign(0.059) TCGA-ER-A19F-06 14 24976598 24976598 C T CMA1 Missense_Mutation p.R58Q 0.50 tolerated(0.25) benign(0.03) TCGA-ER-A19F-06 14 29237249 29237249 G A FOXG1 Nonsense_Mutation p.W255* 0.28 TCGA-ER-A19F-06 14 38061347 38061347 C T FOXA1 Nonsense_Mutation p.W214* 0.11 TCGA-ER-A19F-06 14 38679115 38679115 C T SSTR1 Missense_Mutation p.A174V 0.49 deleterious(0) probably_damaging(0.983) TCGA-ER-A19F-06 14 39717065 39717065 G A MIA2 Silent p.T429T 0.40 TCGA-ER-A19F-06 14 39722131 39722131 G A MIA2 Missense_Mutation p.D583N 0.38 tolerated(0.1) possibly_damaging(0.856) TCGA-ER-A19F-06 14 42356439 42356439 C T LRFN5 Missense_Mutation p.S204L 0.41 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 14 45605493 45605493 A G FANCM Missense_Mutation p.T87A 0.22 deleterious(0) benign(0.037) TCGA-ER-A19F-06 14 50131859 50131859 G A POLE2 Missense_Mutation p.P200L 0.40 tolerated(0.12) benign(0.007) TCGA-ER-A19F-06 14 55637496 55637496 G A DLGAP5 Silent p.L437L 0.41 TCGA-ER-A19F-06 14 60923639 60923639 C T C14orf39 Missense_Mutation p.E452K 0.37 deleterious(0.01) benign(0.021) TCGA-ER-A19F-06 14 62463105 62463105 G A SYT16 Nonsense_Mutation p.W123* 0.41 TCGA-ER-A19F-06 14 70263889 70263889 G A SLC10A1 5'UTR 0.21 TCGA-ER-A19F-06 14 70263890 70263890 G A SLC10A1 5'UTR 0.21 TCGA-ER-A19F-06 14 70712962 70712962 G A ADAM21P1 RNA 0.52 TCGA-ER-A19F-06 14 71199751 71199751 G A MAP3K9 Missense_Mutation p.P793S 0.33 tolerated(0.09) benign(0.075) TCGA-ER-A19F-06 14 74969359 74969359 G A LTBP2 Missense_Mutation p.P1723S 0.31 tolerated(0.32) benign(0.014) TCGA-ER-A19F-06 14 75574166 75574166 G A NEK9 Missense_Mutation p.H403Y 0.46 tolerated(0.86) possibly_damaging(0.558) TCGA-ER-A19F-06 14 76420869 76420869 G A TTLL5 3'UTR 0.21 TCGA-ER-A19F-06 14 77719684 77719684 G A TMEM63C Missense_Mutation p.E729K 0.52 tolerated(0.06) benign(0.41) TCGA-ER-A19F-06 14 79432563 79432563 G A NRXN3 Missense_Mutation p.G491E 0.43 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 14 81251542 81251542 G A CEP128 Silent p.S636S 0.39 TCGA-ER-A19F-06 14 89629234 89629234 C T FOXN3 Missense_Mutation p.E333K 0.31 deleterious(0.02) possibly_damaging(0.496) TCGA-ER-A19F-06 14 89878539 89878539 G A FOXN3 Silent p.T94T 0.44 TCGA-ER-A19F-06 14 91413858 91413858 G A RPS6KA5 Missense_Mutation p.S144F 0.35 tolerated(0.4) benign(0.004) TCGA-ER-A19F-06 14 92268723 92268723 G A TC2N Missense_Mutation p.S115F 0.28 tolerated(0.69) benign(0.396) TCGA-ER-A19F-06 14 94084570 94084570 C T UNC79 Silent p.I1242I 0.53 TCGA-ER-A19F-06 14 96797765 96797765 A T ATG2B Missense_Mutation p.F560I 0.28 deleterious(0.01) probably_damaging(0.942) TCGA-ER-A19F-06 15 100331376 100331376 G A AC090825.1 5'Flank 0.48 TCGA-ER-A19F-06 15 101114038 101114038 G A LINS Missense_Mutation p.S347L 0.41 tolerated(1) benign(0.002) TCGA-ER-A19F-06 15 101970250 101970250 C T PCSK6 Missense_Mutation p.D225N 0.33 tolerated(0.06) possibly_damaging(0.785) TCGA-ER-A19F-06 15 20644851 20644851 C T HERC2P3 RNA 0.19 TCGA-ER-A19F-06 15 24921240 24921240 C T NPAP1 Missense_Mutation p.R76W 0.39 deleterious(0) possibly_damaging(0.582) TCGA-ER-A19F-06 15 25220561 25220561 C T SNRPN Silent p.I20I 0.35 TCGA-ER-A19F-06 15 34536194 34536194 G A SLC12A6 Nonsense_Mutation p.R675* 0.38 TCGA-ER-A19F-06 15 34536195 34536195 G A SLC12A6 Silent p.P674P 0.38 TCGA-ER-A19F-06 15 34647860 34647860 C T NUTM1 Missense_Mutation p.L523F 0.45 deleterious(0.03) possibly_damaging(0.736) TCGA-ER-A19F-06 15 39874510 39874510 G A THBS1 Missense_Mutation p.E62K 0.29 tolerated(0.48) benign(0.073) TCGA-ER-A19F-06 15 40068663 40068663 G A FSIP1 Silent p.R21R 0.39 TCGA-ER-A19F-06 15 40328463 40328463 C T SRP14 3'UTR 0.29 TCGA-ER-A19F-06 15 41224428 41224428 C T DLL4 Missense_Mutation p.L240F 0.38 tolerated(0.11) benign(0.278) TCGA-ER-A19F-06 15 41870298 41870298 G A TYRO3 Missense_Mutation p.D833N 0.28 tolerated(0.21) benign(0.005) TCGA-ER-A19F-06 15 42107932 42107932 C T MAPKBP1 Silent p.I482I 0.41 TCGA-ER-A19F-06 15 43568793 43568793 C T TGM7 Missense_Mutation p.G665R 0.38 tolerated(0.82) benign(0.391) TCGA-ER-A19F-06 15 43924973 43924973 G A CATSPER2 Silent p.V446V 0.40 TCGA-ER-A19F-06 15 45556877 45556877 G A SLC28A2 Missense_Mutation p.G205S 0.43 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 15 50791221 50791221 C T USP8 Missense_Mutation p.S1098F 0.44 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 15 52404571 52404571 C T BCL2L10 Nonsense_Mutation p.W118* 0.57 TCGA-ER-A19F-06 15 54306557 54306557 C T UNC13C Missense_Mutation p.S486L 0.41 deleterious_low_confidence(0) benign(0.11) TCGA-ER-A19F-06 15 58855876 58855876 C T LIPC Missense_Mutation p.L448F 0.27 deleterious(0.04) possibly_damaging(0.833) TCGA-ER-A19F-06 15 62993383 62993383 G A TLN2 Missense_Mutation p.G556R 0.39 deleterious(0) probably_damaging(0.978) TCGA-ER-A19F-06 15 62993384 62993384 G A TLN2 Missense_Mutation p.G556E 0.40 deleterious(0) probably_damaging(0.957) TCGA-ER-A19F-06 15 65499344 65499344 C T CILP Missense_Mutation p.G67E 0.48 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 15 66794245 66794245 G A RPL4 Missense_Mutation p.R143C 0.46 deleterious(0.03) benign(0.06) TCGA-ER-A19F-06 15 71211510 71211510 G A LRRC49 Missense_Mutation p.R235Q 0.39 tolerated(0.07) possibly_damaging(0.837) TCGA-ER-A19F-06 15 72020924 72020924 G A THSD4 Missense_Mutation p.G465E 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 15 72190481 72190481 G A MYO9A Missense_Mutation p.L1455F 0.44 tolerated_low_confidence(0.31) benign(0.003) TCGA-ER-A19F-06 15 72668076 72668076 G A HEXA Missense_Mutation p.R80C 0.45 deleterious(0.04) possibly_damaging(0.809) TCGA-ER-A19F-06 15 74367223 74367223 C T GOLGA6A Missense_Mutation p.E323K 0.11 tolerated(0.25) benign(0.301) TCGA-ER-A19F-06 15 74743820 74743820 G A UBL7 Silent p.I143I 0.36 TCGA-ER-A19F-06 15 75108582 75108582 C T LMAN1L Missense_Mutation p.P87L 0.31 tolerated(0.56) benign(0.004) TCGA-ER-A19F-06 15 81199035 81199035 G A KIAA1199 Silent p.E481E 0.46 TCGA-ER-A19F-06 15 85383214 85383214 C T ALPK3 Missense_Mutation p.P437L 0.65 tolerated(0.08) benign(0.013) TCGA-ER-A19F-06 15 89392722 89392722 G A ACAN Missense_Mutation p.E596K 0.27 tolerated(0.13) unknown(0) TCGA-ER-A19F-06 15 89401287 89401287 G A ACAN Missense_Mutation p.G1824D 0.47 deleterious(0.02) probably_damaging(0.988) TCGA-ER-A19F-06 15 89744671 89744671 C T ABHD2 3'UTR 0.53 TCGA-ER-A19F-06 15 91435974 91435974 C T FES Missense_Mutation p.A582V 0.38 tolerated(0.16) benign(0.006) TCGA-ER-A19F-06 15 92647677 92647677 C T SLCO3A1 Missense_Mutation p.S305F 0.46 deleterious(0.01) benign(0.021) TCGA-ER-A19F-06 15 94882563 94882563 C T MCTP2 Silent p.L228L 0.42 TCGA-ER-A19F-06 16 11219850 11219850 C T CLEC16A Missense_Mutation p.P830S 0.44 deleterious(0) probably_damaging(0.971) TCGA-ER-A19F-06 16 1476323 1476323 G A C16orf91 Silent p.N100N 0.46 TCGA-ER-A19F-06 16 14970280 14970280 C T NOMO1 Silent p.I807I 0.30 TCGA-ER-A19F-06 16 1537629 1537629 G A PTX4 Missense_Mutation p.H157Y 0.37 deleterious(0.05) possibly_damaging(0.731) TCGA-ER-A19F-06 16 19628025 19628025 C T C16orf62 Silent p.V462V 0.26 TCGA-ER-A19F-06 16 19884103 19884103 A T GPRC5B Missense_Mutation p.V22E 0.38 deleterious(0.01) benign(0.138) TCGA-ER-A19F-06 16 20702464 20702464 G A ACSM1 Missense_Mutation p.S16F 0.43 tolerated(0.25) benign(0.01) TCGA-ER-A19F-06 16 21048047 21048047 T C DNAH3 Missense_Mutation p.K1692E 0.40 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 16 21214493 21214493 G A ZP2 Missense_Mutation p.S351F 0.38 tolerated(0.1) benign(0.039) TCGA-ER-A19F-06 16 23489718 23489718 G A GGA2 Silent p.L421L 0.28 TCGA-ER-A19F-06 16 2493718 2493718 C T CCNF Silent p.I282I 0.41 TCGA-ER-A19F-06 16 27519910 27519910 A T GTF3C1 Missense_Mutation p.L398Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 16 28877985 28877985 C T SH2B1 Silent p.G190G 0.47 TCGA-ER-A19F-06 16 29821365 29821365 C T MAZ Intron 0.38 TCGA-ER-A19F-06 16 29874257 29874257 C T CDIPT 5'UTR 0.48 TCGA-ER-A19F-06 16 30507449 30507449 G A ITGAL Missense_Mutation p.G512E 0.35 deleterious(0) probably_damaging(0.994) TCGA-ER-A19F-06 16 31089890 31089890 C T ZNF646 Nonsense_Mutation p.Q749* 0.37 TCGA-ER-A19F-06 16 31539891 31539891 G A AHSP Missense_Mutation p.R63Q 0.46 tolerated(1) benign(0.001) TCGA-ER-A19F-06 16 3454685 3454685 C T ZNF174 Intron 0.58 TCGA-ER-A19F-06 16 46781899 46781899 G A MYLK3 Silent p.A69A 0.37 TCGA-ER-A19F-06 16 47699901 47699901 C T PHKB Intron 0.42 TCGA-ER-A19F-06 16 4797551 4797551 G C C16orf71 Missense_Mutation p.R496S 0.45 tolerated(1) benign(0.004) TCGA-ER-A19F-06 16 48204118 48204118 G A ABCC11 Silent p.F1263F 0.41 TCGA-ER-A19F-06 16 50707821 50707821 G A SNX20 Silent p.F149F 0.50 TCGA-ER-A19F-06 16 53726061 53726061 G A RPGRIP1L Missense_Mutation p.P149L 0.35 tolerated(0.14) benign(0.027) TCGA-ER-A19F-06 16 53726062 53726062 G A RPGRIP1L Missense_Mutation p.P149S 0.35 tolerated(0.06) benign(0.046) TCGA-ER-A19F-06 16 57054760 57054760 G A NLRC5 Missense_Mutation p.E46K 0.43 tolerated(0.47) benign(0.006) TCGA-ER-A19F-06 16 57062269 57062269 C T NLRC5 Missense_Mutation p.P739S 0.38 tolerated(0.54) benign(0.009) TCGA-ER-A19F-06 16 57075940 57075940 C T NLRC5 Nonsense_Mutation p.Q1026* 0.33 TCGA-ER-A19F-06 16 57092005 57092005 G A NLRC5 Missense_Mutation p.G1259R 0.36 deleterious(0.01) benign(0.297) TCGA-ER-A19F-06 16 57111870 57111870 C T NLRC5 Silent p.A1673A 0.42 TCGA-ER-A19F-06 16 57159865 57159865 G A CPNE2 Missense_Mutation p.A341T 0.42 deleterious(0.03) possibly_damaging(0.859) TCGA-ER-A19F-06 16 61747832 61747832 C T CDH8 Missense_Mutation p.D523N 0.24 deleterious(0) probably_damaging(0.966) TCGA-ER-A19F-06 16 66944275 66944275 G A CDH16 Silent p.I685I 0.34 TCGA-ER-A19F-06 16 66947150 66947150 C T CDH16 Missense_Mutation p.G313D 0.38 tolerated(0.07) benign(0.17) TCGA-ER-A19F-06 16 66947151 66947151 C T CDH16 Missense_Mutation p.G313S 0.37 deleterious(0.05) benign(0.262) TCGA-ER-A19F-06 16 66951570 66951570 C T CDH16 Missense_Mutation p.G35E 0.43 deleterious(0) probably_damaging(0.962) TCGA-ER-A19F-06 16 67399213 67399213 G A LRRC36 Missense_Mutation p.E237K 0.38 tolerated(0.06) possibly_damaging(0.72) TCGA-ER-A19F-06 16 68267908 68267908 C T ESRP2 Missense_Mutation p.A144T 0.42 tolerated(0.14) benign(0.133) TCGA-ER-A19F-06 16 68267909 68267909 C T ESRP2 Silent p.E143E 0.42 TCGA-ER-A19F-06 16 69201091 69201091 A - CIRH1A Intron 0.21 TCGA-ER-A19F-06 16 70162962 70162962 G A PDPR Missense_Mutation p.E182K 0.32 tolerated(0.78) benign(0.035) TCGA-ER-A19F-06 16 71015398 71015398 C T HYDIN Missense_Mutation p.R1469K 0.40 possibly_damaging(0.87) TCGA-ER-A19F-06 16 71674707 71674707 G A MARVELD3 Missense_Mutation p.R337K 0.46 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 16 72094666 72094666 G A HP Silent p.E366E 0.31 TCGA-ER-A19F-06 16 72829797 72829797 C T ZFHX3 Missense_Mutation p.D2262N 0.41 probably_damaging(0.995) TCGA-ER-A19F-06 16 75148831 75148831 T A LDHD Silent p.R121R 0.33 TCGA-ER-A19F-06 16 75148832 75148832 C T LDHD Missense_Mutation p.R121Q 0.32 tolerated(0.51) benign(0.009) TCGA-ER-A19F-06 16 77353807 77353807 G A ADAMTS18 Missense_Mutation p.S824F 0.77 deleterious(0) possibly_damaging(0.841) TCGA-ER-A19F-06 16 77359844 77359844 G A ADAMTS18 Missense_Mutation p.R651W 0.73 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 16 81323952 81323952 G A BCMO1 Splice_Site p.X472_splice 0.70 TCGA-ER-A19F-06 16 84215594 84215594 G A TAF1C Silent p.L264L 0.71 TCGA-ER-A19F-06 16 84474536 84474536 C T ATP2C2 Missense_Mutation p.S428F 0.70 tolerated(0.15) possibly_damaging(0.857) TCGA-ER-A19F-06 16 88039697 88039697 G T BANP Missense_Mutation p.A153S 0.76 tolerated_low_confidence(0.15) benign(0.256) TCGA-ER-A19F-06 16 8868910 8868910 A T ABAT Missense_Mutation p.N373I 0.47 tolerated(0.09) benign(0.06) TCGA-ER-A19F-06 17 10356141 10356141 C T MYH4 Missense_Mutation p.E1074K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19F-06 17 10443353 10443353 C T MYH2 Missense_Mutation p.E347K 0.46 deleterious(0) benign(0.419) TCGA-ER-A19F-06 17 12655875 12655875 C T MYOCD Missense_Mutation p.P424S 0.47 tolerated(0.08) probably_damaging(1) TCGA-ER-A19F-06 17 1580001 1580001 G A PRPF8 Missense_Mutation p.P729L 0.48 deleterious(0) probably_damaging(0.99) TCGA-ER-A19F-06 17 17721087 17721087 G A SREBF1 Missense_Mutation p.L473F 0.44 tolerated(0.21) benign(0.03) TCGA-ER-A19F-06 17 17881042 17881042 G A LRRC48 Missense_Mutation p.D44N 0.39 tolerated(0.12) benign(0.188) TCGA-ER-A19F-06 17 18638485 18638485 C T TRIM16L Silent p.L253L 0.41 TCGA-ER-A19F-06 17 19091420 19091420 T A SNORD3A RNA 0.09 TCGA-ER-A19F-06 17 20405937 20405937 C T RP11-434D2.7 3'Flank 0.32 TCGA-ER-A19F-06 17 26604343 26604343 G A AC061975.8 5'Flank 0.41 TCGA-ER-A19F-06 17 26941126 26941126 G A RP11-192H23.4 Silent p.T18T 0.54 TCGA-ER-A19F-06 17 27014149 27014149 C T SUPT6H Missense_Mutation p.S915F 0.40 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 17 27308885 27308885 G A SEZ6 Silent p.F76F 0.43 TCGA-ER-A19F-06 17 27809280 27809280 C T TAOK1 Missense_Mutation p.S210F 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 17 29486027 29486027 G A NF1 Splice_Site p.X69_splice 0.27 TCGA-ER-A19F-06 17 29509615 29509615 C T NF1 Missense_Mutation p.L274F 0.49 deleterious(0.01) probably_damaging(0.986) TCGA-ER-A19F-06 17 30821872 30821872 T A MYO1D Nonsense_Mutation p.K976* 0.25 TCGA-ER-A19F-06 17 35603821 35603821 G A ACACA Missense_Mutation p.P794L 0.40 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 17 36002295 36002295 G A DDX52 Nonsense_Mutation p.Q44* 0.25 TCGA-ER-A19F-06 17 36485008 36485008 C T GPR179 Missense_Mutation p.E1482K 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-ER-A19F-06 17 37883082 37883082 C T ERBB2 Silent p.G995G 0.51 TCGA-ER-A19F-06 17 39340665 39340665 T C KRTAP4-1 3'UTR 0.46 TCGA-ER-A19F-06 17 39388872 39388872 C T KRTAP9-3 Missense_Mutation p.S40F 0.53 deleterious(0) unknown(0) TCGA-ER-A19F-06 17 39552765 39552765 G A KRT31 Silent p.I165I 0.45 TCGA-ER-A19F-06 17 39577646 39577646 C G KRT37 Missense_Mutation p.R405P 0.41 deleterious(0) probably_damaging(0.973) TCGA-ER-A19F-06 17 39724455 39724455 G A KRT9 Silent p.I451I 0.35 TCGA-ER-A19F-06 17 40939866 40939866 C T WNK4 Silent p.P604P 0.34 TCGA-ER-A19F-06 17 41003627 41003627 C T AOC3 Silent p.A89A 0.43 TCGA-ER-A19F-06 17 41003628 41003628 C T AOC3 Missense_Mutation p.R90W 0.43 deleterious(0.04) possibly_damaging(0.725) TCGA-ER-A19F-06 17 41343492 41343492 C T NBR1 Missense_Mutation p.L323F 0.43 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 17 41975721 41975721 C T MPP2 Missense_Mutation p.G20E 0.32 tolerated(1) benign(0.345) TCGA-ER-A19F-06 17 42089457 42089457 G A TMEM101 Nonsense_Mutation p.Q205* 0.42 TCGA-ER-A19F-06 17 42333174 42333174 T C SLC4A1 Missense_Mutation p.N556S 0.39 tolerated(0.23) benign(0.023) TCGA-ER-A19F-06 17 42837206 42837206 G A ADAM11 Missense_Mutation p.G60R 0.59 tolerated(0.34) benign(0.033) TCGA-ER-A19F-06 17 43044829 43044829 C T C1QL1 Silent p.K196K 0.50 TCGA-ER-A19F-06 17 43321209 43321209 C T FMNL1 Silent p.F755F 0.59 TCGA-ER-A19F-06 17 4391183 4391183 G A SPNS3 Silent p.E511E 0.43 TCGA-ER-A19F-06 17 44952698 44952698 G A WNT9B Missense_Mutation p.R189Q 0.36 tolerated(0.13) benign(0.073) TCGA-ER-A19F-06 17 45247398 45247398 C T CDC27 Missense_Mutation p.G88R 0.27 deleterious(0) possibly_damaging(0.691) TCGA-ER-A19F-06 17 45369600 45369600 C T ITGB3 Silent p.I452I 0.42 TCGA-ER-A19F-06 17 4586150 4586150 G A PELP1 Missense_Mutation p.S173F 0.38 probably_damaging(0.975) TCGA-ER-A19F-06 17 45924965 45924965 C G SP6 Missense_Mutation p.W277C 0.47 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 17 46198670 46198670 G A SNX11 Missense_Mutation p.E205K 0.40 tolerated_low_confidence(0.08) benign(0.003) TCGA-ER-A19F-06 17 4646597 4646597 G A ZMYND15 Splice_Site p.X382_splice 0.42 TCGA-ER-A19F-06 17 46805734 46805734 G A HOXB13 Silent p.S74S 0.28 TCGA-ER-A19F-06 17 46973191 46973191 G A ATP5G1 3'UTR 0.40 TCGA-ER-A19F-06 17 48149481 48149481 C T ITGA3 Missense_Mutation p.P364L 0.49 deleterious(0) probably_damaging(0.948) TCGA-ER-A19F-06 17 48674195 48674195 G A CACNA1G Missense_Mutation p.G1057S 0.67 tolerated(0.23) benign(0.119) TCGA-ER-A19F-06 17 5058756 5058756 C T USP6 Missense_Mutation p.R895C 0.40 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-ER-A19F-06 17 55184399 55184399 C T AKAP1 Missense_Mutation p.S525L 0.58 tolerated(0.53) benign(0.008) TCGA-ER-A19F-06 17 56565373 56565373 C T HSF5 Missense_Mutation p.G88D 0.56 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 17 59557462 59557462 C T TBX4 Missense_Mutation p.P268L 0.58 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 17 59761105 59761105 G A BRIP1 Missense_Mutation p.P1101L 0.34 tolerated_low_confidence(0.14) benign(0.031) TCGA-ER-A19F-06 17 61957616 61957616 G A GH2 3'UTR 0.53 TCGA-ER-A19F-06 17 67096943 67096943 G A ABCA6 Missense_Mutation p.P1003S 0.67 tolerated(0.68) benign(0.01) TCGA-ER-A19F-06 17 68128160 68128160 G A KCNJ16 5'UTR 0.50 TCGA-ER-A19F-06 17 6979025 6979025 G A CLEC10A Intron 0.52 TCGA-ER-A19F-06 17 704349 704349 C T NXN Missense_Mutation p.R383Q 0.33 deleterious(0.01) benign(0.2) TCGA-ER-A19F-06 17 7229762 7229762 G A NEURL4 Nonsense_Mutation p.Q400* 0.47 TCGA-ER-A19F-06 17 72954844 72954844 G A HID1 Silent p.F388F 0.38 TCGA-ER-A19F-06 17 7345123 7345123 C T FGF11 Silent p.L111L 0.47 TCGA-ER-A19F-06 17 73626700 73626700 C T RECQL5 Missense_Mutation p.E573K 0.22 tolerated(0.66) benign(0.004) TCGA-ER-A19F-06 17 73746842 73746842 C T ITGB4 Silent p.L1186L 0.31 TCGA-ER-A19F-06 17 73906868 73906868 T C FBF1 Missense_Mutation p.N1113S 0.61 deleterious(0.01) possibly_damaging(0.607) TCGA-ER-A19F-06 17 73924191 73924191 C T FBF1 Silent p.G107G 0.56 TCGA-ER-A19F-06 17 74712749 74712749 G A JMJD6 3'UTR 0.54 TCGA-ER-A19F-06 17 76525569 76525569 G A DNAH17 Silent p.I1164I 0.26 TCGA-ER-A19F-06 17 76570936 76570936 G A DNAH17 Silent p.F68F 0.59 TCGA-ER-A19F-06 17 7679359 7679359 G A DNAH2 Silent p.V1613V 0.38 TCGA-ER-A19F-06 17 7752206 7752206 C T KDM6B Missense_Mutation p.S867L 0.31 possibly_damaging(0.519) TCGA-ER-A19F-06 17 77758386 77758386 C T CBX2 Missense_Mutation p.P382S 0.24 tolerated(0.38) benign(0.064) TCGA-ER-A19F-06 17 78272221 78272221 G T RNF213 Missense_Mutation p.A705S 0.46 benign(0.002) TCGA-ER-A19F-06 17 7950951 7950951 C T ALOX15B Missense_Mutation p.S550F 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 17 79876028 79876028 C T SIRT7 5'UTR 0.27 TCGA-ER-A19F-06 17 79954353 79954353 A G ASPSCR1 Silent p.S188S 0.38 TCGA-ER-A19F-06 17 81052232 81052232 G A METRNL Missense_Mutation p.G283D 0.51 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 17 9850238 9850238 G A GAS7 Silent p.T196T 0.59 TCGA-ER-A19F-06 17 9850239 9850239 G A GAS7 Missense_Mutation p.T196I 0.59 deleterious(0.02) benign(0.128) TCGA-ER-A19F-06 18 14478362 14478362 G A CXADRP3 RNA 0.20 TCGA-ER-A19F-06 18 14478363 14478363 G A CXADRP3 RNA 0.21 TCGA-ER-A19F-06 18 19399522 19399522 C T MIB1 Missense_Mutation p.L582F 0.29 deleterious(0) probably_damaging(0.966) TCGA-ER-A19F-06 18 23731865 23731865 G A PSMA8 Silent p.V97V 0.38 TCGA-ER-A19F-06 18 28671089 28671089 T C DSC2 Missense_Mutation p.K126E 0.42 tolerated(0.06) benign(0.118) TCGA-ER-A19F-06 18 28968435 28968435 G A DSG4 Missense_Mutation p.E108K 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-ER-A19F-06 18 30257204 30257204 G A KLHL14 Nonsense_Mutation p.R560* 0.45 TCGA-ER-A19F-06 18 30926193 30926193 G A CCDC178 Missense_Mutation p.P214S 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 18 30926194 30926194 G A CCDC178 Silent p.L213L 0.30 TCGA-ER-A19F-06 18 31318854 31318854 G A ASXL3 Missense_Mutation p.E496K 0.41 benign(0.11) TCGA-ER-A19F-06 18 32374194 32374194 C T DTNA Silent p.F114F 0.35 TCGA-ER-A19F-06 18 34850794 34850794 G A CELF4 Missense_Mutation p.P346S 0.27 tolerated(0.19) benign(0.06) TCGA-ER-A19F-06 18 42530559 42530559 G A SETBP1 Silent p.R418R 0.39 TCGA-ER-A19F-06 18 42531999 42531999 C T SETBP1 Silent p.S898S 0.59 TCGA-ER-A19F-06 18 44554662 44554662 C T TCEB3C Missense_Mutation p.D518N 0.06 tolerated(0.59) benign(0.07) TCGA-ER-A19F-06 18 44555148 44555148 C T TCEB3C Missense_Mutation p.E356K 0.05 deleterious(0.01) benign(0.113) TCGA-ER-A19F-06 18 47107876 47107876 C T LIPG Silent p.F295F 0.43 TCGA-ER-A19F-06 18 52556538 52556538 G A RAB27B Missense_Mutation p.R184Q 0.35 deleterious(0.03) benign(0.083) TCGA-ER-A19F-06 18 52608269 52608269 C T CCDC68 Missense_Mutation p.E55K 0.29 tolerated(0.08) benign(0.128) TCGA-ER-A19F-06 18 60612419 60612419 T G PHLPP1 Missense_Mutation p.M1080R 0.44 tolerated(0.08) possibly_damaging(0.821) TCGA-ER-A19F-06 18 61322957 61322957 G A SERPINB3 Silent p.F369F 0.38 TCGA-ER-A19F-06 18 61390499 61390499 G A SERPINB11 Missense_Mutation p.A349T 0.32 deleterious(0.04) probably_damaging(0.976) TCGA-ER-A19F-06 18 624990 624990 T A CLUL1 Silent p.I127I 0.31 TCGA-ER-A19F-06 18 7013954 7013954 C T LAMA1 Missense_Mutation p.D1075N 0.42 tolerated(0.33) benign(0.02) TCGA-ER-A19F-06 18 7024406 7024406 G T LAMA1 Missense_Mutation p.P821Q 0.42 tolerated(0.23) possibly_damaging(0.46) TCGA-ER-A19F-06 18 70451049 70451049 C T NETO1 Silent p.E244E 0.55 TCGA-ER-A19F-06 18 76754350 76754350 G A SALL3 Missense_Mutation p.D787N 0.39 deleterious(0) possibly_damaging(0.449) TCGA-ER-A19F-06 18 9257234 9257234 C T ANKRD12 Silent p.F1323F 0.34 TCGA-ER-A19F-06 19 11465613 11465613 C T CCDC159 3'UTR 0.39 TCGA-ER-A19F-06 19 11486272 11486272 C T SWSAP1 Silent p.P90P 0.41 TCGA-ER-A19F-06 19 11728123 11728123 C T ZNF627 Missense_Mutation p.H269Y 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19F-06 19 12429625 12429625 G A ZNF563 Missense_Mutation p.P405L 0.46 tolerated(0.3) benign(0.378) TCGA-ER-A19F-06 19 12848457 12848457 T G ASNA1 Silent p.G46G 0.32 TCGA-ER-A19F-06 19 1434888 1434888 G A DAZAP1 Missense_Mutation p.G401R 0.56 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A19F-06 19 14581441 14581441 G A PKN1 Missense_Mutation p.E837K 0.14 deleterious(0) possibly_damaging(0.598) TCGA-ER-A19F-06 19 14581443 14581443 G A PKN1 Silent p.E837E 0.15 TCGA-ER-A19F-06 19 14765810 14765810 G A EMR3 Silent p.I187I 0.29 TCGA-ER-A19F-06 19 15072936 15072936 G A SLC1A6 Silent p.L271L 0.39 TCGA-ER-A19F-06 19 15166878 15166878 G A CASP14 Missense_Mutation p.R236Q 0.36 tolerated(0.08) probably_damaging(0.974) TCGA-ER-A19F-06 19 15586583 15586583 G A PGLYRP2 Silent p.L300L 0.51 TCGA-ER-A19F-06 19 15905710 15905710 C T OR10H5 Silent p.P284P 0.43 TCGA-ER-A19F-06 19 17845123 17845126 GTGG C MAP1S In_Frame_Del p.W1023del 0.42 TCGA-ER-A19F-06 19 18180356 18180356 C T IL12RB1 Missense_Mutation p.A397T 0.41 deleterious(0.04) benign(0.357) TCGA-ER-A19F-06 19 18685961 18685961 G A UBA52 3'UTR 0.53 TCGA-ER-A19F-06 19 18976861 18976861 C T UPF1 Silent p.Y1082Y 0.31 TCGA-ER-A19F-06 19 18994943 18994943 G A CERS1 Silent p.L181L 0.30 TCGA-ER-A19F-06 19 20296886 20296886 C T ZNF486 Missense_Mutation p.P83L 0.38 tolerated(0.07) benign(0.084) TCGA-ER-A19F-06 19 22952122 22952122 G A ZNF99 Missense_Mutation p.S3L 0.40 tolerated(0.78) benign(0.159) TCGA-ER-A19F-06 19 2345312 2345312 C T SPPL2B RNA 0.27 TCGA-ER-A19F-06 19 24102931 24102931 G A ZNF726 Intron 0.50 TCGA-ER-A19F-06 19 2827625 2827625 C T ZNF554 Missense_Mutation p.T46I 0.37 deleterious(0) probably_damaging(0.913) TCGA-ER-A19F-06 19 33579109 33579109 G A GPATCH1 Missense_Mutation p.R48Q 0.41 deleterious(0.02) probably_damaging(0.973) TCGA-ER-A19F-06 19 3600434 3600434 G A TBXA2R Missense_Mutation p.L67F 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A19F-06 19 36370386 36370386 C T APLP1 3'UTR 0.38 TCGA-ER-A19F-06 19 37368585 37368585 C T ZNF345 Missense_Mutation p.P285S 0.38 deleterious(0.02) possibly_damaging(0.748) TCGA-ER-A19F-06 19 37368586 37368586 C T ZNF345 Missense_Mutation p.P285L 0.37 deleterious(0.01) possibly_damaging(0.7) TCGA-ER-A19F-06 19 37677733 37677733 G A ZNF585B Missense_Mutation p.H236Y 0.42 deleterious(0.01) probably_damaging(0.912) TCGA-ER-A19F-06 19 38187666 38187666 G A ZNF607 3'UTR 0.62 TCGA-ER-A19F-06 19 38590622 38590622 C T SIPA1L3 Silent p.S562S 0.44 TCGA-ER-A19F-06 19 38774365 38774365 G A SPINT2 Missense_Mutation p.G69R 0.43 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 19 38850215 38850215 G A CATSPERG Silent p.T534T 0.41 TCGA-ER-A19F-06 19 38948853 38948853 G A RYR1 Silent p.G696G 0.36 TCGA-ER-A19F-06 19 39075687 39075687 C T RYR1 Silent p.F4917F 0.45 TCGA-ER-A19F-06 19 3961032 3961032 G A DAPK3 Missense_Mutation p.R253C 0.37 deleterious(0.04) probably_damaging(0.976) TCGA-ER-A19F-06 19 42381326 42381326 G A CD79A 5'UTR 0.40 TCGA-ER-A19F-06 19 42474413 42474413 C T ATP1A3 Missense_Mutation p.M835I 0.50 deleterious(0.02) benign(0.012) TCGA-ER-A19F-06 19 43376041 43376041 G A PSG1 Missense_Mutation p.S196F 0.45 deleterious(0) possibly_damaging(0.766) TCGA-ER-A19F-06 19 43430819 43430819 C T PSG7 Silent p.E253E 0.32 TCGA-ER-A19F-06 19 43698546 43698546 G A PSG4 Missense_Mutation p.R397C 0.47 deleterious(0) probably_damaging(0.977) TCGA-ER-A19F-06 19 43699279 43699279 C T PSG4 Missense_Mutation p.V286I 0.41 tolerated(0.32) benign(0.299) TCGA-ER-A19F-06 19 44661600 44661600 C T ZNF234 Silent p.I477I 0.41 TCGA-ER-A19F-06 19 4538831 4538831 G A LRG1 Silent p.S55S 0.44 TCGA-ER-A19F-06 19 47424004 47424004 A C ARHGAP35 Missense_Mutation p.N691T 0.37 tolerated(0.32) benign(0.002) TCGA-ER-A19F-06 19 4770789 4770789 G A MIR7-3 RNA 0.43 TCGA-ER-A19F-06 19 49224027 49224027 G A RASIP1 3'UTR 0.37 TCGA-ER-A19F-06 19 49261309 49261309 G A FGF21 Silent p.R154R 0.36 TCGA-ER-A19F-06 19 49442803 49442803 G A DHDH Missense_Mutation p.G155E 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 19 49490544 49490544 G A GYS1 Silent p.L133L 0.67 TCGA-ER-A19F-06 19 49573344 49573344 C T KCNA7 Silent p.G449G 0.36 TCGA-ER-A19F-06 19 50368642 50368642 C T PNKP Silent p.K80K 0.50 TCGA-ER-A19F-06 19 50909675 50909675 G A POLD1 Silent p.R465R 0.50 TCGA-ER-A19F-06 19 51133319 51133319 C T SYT3 Missense_Mutation p.E262K 0.43 deleterious(0.01) possibly_damaging(0.815) TCGA-ER-A19F-06 19 51767223 51767223 C T SIGLECL1 5'UTR 0.42 TCGA-ER-A19F-06 19 51986374 51986374 C T CEACAM18 Silent p.S320S 0.45 TCGA-ER-A19F-06 19 5212122 5212122 G A PTPRS Nonsense_Mutation p.Q1637* 0.52 TCGA-ER-A19F-06 19 5245958 5245958 T C PTPRS Missense_Mutation p.M273V 0.42 deleterious(0.02) probably_damaging(0.935) TCGA-ER-A19F-06 19 53086149 53086149 C T ZNF701 Silent p.F345F 0.41 TCGA-ER-A19F-06 19 53116680 53116680 T C ZNF83 Missense_Mutation p.K380E 0.38 deleterious(0.02) probably_damaging(0.978) TCGA-ER-A19F-06 19 53117670 53117670 T A ZNF83 Missense_Mutation p.S50C 0.32 tolerated(0.12) possibly_damaging(0.628) TCGA-ER-A19F-06 19 53208329 53208329 A T ZNF611 Missense_Mutation p.V660E 0.40 tolerated(0.36) possibly_damaging(0.486) TCGA-ER-A19F-06 19 53208656 53208656 G A ZNF611 Missense_Mutation p.S551F 0.40 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 19 53302905 53302905 C A ZNF28 3'UTR 0.08 TCGA-ER-A19F-06 19 53302989 53302989 C A ZNF28 Missense_Mutation p.M703I 0.42 tolerated(0.38) benign(0.02) TCGA-ER-A19F-06 19 53384412 53384412 G A ZNF320 Missense_Mutation p.H323Y 0.34 deleterious(0) probably_damaging(0.983) TCGA-ER-A19F-06 19 53770837 53770837 G A VN1R4 Missense_Mutation p.H28Y 0.32 tolerated(0.06) benign(0.209) TCGA-ER-A19F-06 19 54080169 54080169 C T ZNF331 Missense_Mutation p.P119S 0.46 tolerated(0.29) benign(0.011) TCGA-ER-A19F-06 19 54600243 54600243 G A OSCAR Silent p.A97A 0.51 TCGA-ER-A19F-06 19 54611338 54611338 C T TFPT Missense_Mutation p.V213M 0.30 tolerated(0.12) benign(0.008) TCGA-ER-A19F-06 19 54725813 54725813 G A LILRB3 Missense_Mutation p.P182L 0.39 tolerated(0.1) benign(0.263) TCGA-ER-A19F-06 19 54745565 54745565 G A LILRA6 Missense_Mutation p.P182L 0.30 tolerated(0.06) benign(0.06) TCGA-ER-A19F-06 19 54866797 54866797 G A LAIR1 3'UTR 0.43 TCGA-ER-A19F-06 19 55221914 55221914 C A AC098784.2 3'Flank 0.38 TCGA-ER-A19F-06 19 55263104 55263104 A G KIR2DL3 Missense_Mutation p.N240S 0.28 tolerated(0.79) benign(0.002) TCGA-ER-A19F-06 19 55378169 55378169 C T KIR3DL2 Missense_Mutation p.L451F 0.38 tolerated_low_confidence(0.08) benign(0.245) TCGA-ER-A19F-06 19 5591793 5591793 G A SAFB2 Missense_Mutation p.S787L 0.39 deleterious(0) possibly_damaging(0.602) TCGA-ER-A19F-06 19 56206167 56206167 C T EPN1 Missense_Mutation p.S533F 0.33 deleterious(0) probably_damaging(0.981) TCGA-ER-A19F-06 19 56423233 56423233 G A NLRP13 Silent p.F650F 0.35 TCGA-ER-A19F-06 19 56952992 56952992 G A ZNF667 Missense_Mutation p.L458F 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-ER-A19F-06 19 57911020 57911020 G A ZNF548 Silent p.G467G 0.41 TCGA-ER-A19F-06 19 58017786 58017786 C T ZNF773 Missense_Mutation p.P108L 0.36 tolerated(0.66) benign(0) TCGA-ER-A19F-06 19 58384955 58384955 C T ZNF814 Silent p.E601E 0.63 TCGA-ER-A19F-06 19 58420218 58420218 C T ZNF417 Silent p.K476K 0.48 TCGA-ER-A19F-06 19 58574891 58574891 C T ZNF135 Missense_Mutation p.P92S 0.40 tolerated(0.33) benign(0.032) TCGA-ER-A19F-06 19 6156556 6156556 C T ACSBG2 Silent p.I167I 0.42 TCGA-ER-A19F-06 19 6454455 6454455 A C SLC25A23 Missense_Mutation p.I225S 0.32 deleterious(0.02) benign(0.099) TCGA-ER-A19F-06 19 6820766 6820766 C T VAV1 Silent p.F86F 0.41 TCGA-ER-A19F-06 19 6897529 6897529 G A EMR1 Missense_Mutation p.G162E 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19F-06 19 6928251 6928251 A G EMR1 Intron 0.35 TCGA-ER-A19F-06 19 7527156 7527156 C T ARHGEF18 Silent p.F669F 0.40 TCGA-ER-A19F-06 19 8155129 8155129 C G FBN3 Missense_Mutation p.R2013P 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 19 8175829 8175829 C T FBN3 Silent p.G1411G 0.52 TCGA-ER-A19F-06 19 8503361 8503361 C A MARCH2 Silent p.P224P 0.39 TCGA-ER-A19F-06 19 9067149 9067149 G A MUC16 Missense_Mutation p.S6766L 0.49 unknown(0) TCGA-ER-A19F-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.53 unknown(0) TCGA-ER-A19F-06 19 9084604 9084604 G T MUC16 Missense_Mutation p.S2404Y 0.50 unknown(0) TCGA-ER-A19F-06 19 9088960 9088960 T C MUC16 Missense_Mutation p.N952S 0.38 unknown(0) TCGA-ER-A19F-06 19 9213580 9213580 G A OR7G2 Missense_Mutation p.L135F 0.48 deleterious(0.01) benign(0.386) TCGA-ER-A19F-06 19 9225760 9225760 C T OR7G1 Missense_Mutation p.R227K 0.30 tolerated(0.32) benign(0.083) TCGA-ER-A19F-06 19 9296799 9296799 C T OR7D2 Silent p.L114L 0.39 TCGA-ER-A19F-06 19 9361851 9361851 C T OR7E24 Silent p.V44V 0.33 TCGA-ER-A19F-06 19 9413135 9413135 C T ZNF699 Missense_Mutation p.E32K 0.37 deleterious(0) probably_damaging(0.926) TCGA-ER-A19F-06 1 100155120 100155120 G A PALMD Missense_Mutation p.G435E 0.53 tolerated(0.19) probably_damaging(1) TCGA-ER-A19F-06 1 100212969 100212969 G A FRRS1 Missense_Mutation p.P72S 0.46 tolerated(0.53) benign(0.041) TCGA-ER-A19F-06 1 102270070 102270070 A G OLFM3 Silent p.T367T 0.33 TCGA-ER-A19F-06 1 103352467 103352467 G A COL11A1 Missense_Mutation p.S1585F 0.26 unknown(0) TCGA-ER-A19F-06 1 104160630 104160630 G A AMY2A Missense_Mutation p.E75K 0.43 deleterious(0) possibly_damaging(0.816) TCGA-ER-A19F-06 1 11015072 11015072 G A C1orf127 Missense_Mutation p.P317L 0.48 deleterious(0.04) probably_damaging(0.992) TCGA-ER-A19F-06 1 111784004 111784004 C T CHI3L2 Missense_Mutation p.P325L 0.36 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 1 112033353 112033353 G A ADORA3 Silent p.L128L 0.39 TCGA-ER-A19F-06 1 112106514 112106514 C T ADORA3 Missense_Mutation p.E15K 0.40 tolerated_low_confidence(1) possibly_damaging(0.497) TCGA-ER-A19F-06 1 11298094 11298094 G A MTOR Missense_Mutation p.R672C 0.24 deleterious(0) probably_damaging(0.993) TCGA-ER-A19F-06 1 113637023 113637023 C T LRIG2 Missense_Mutation p.S193F 0.50 deleterious(0.03) benign(0.411) TCGA-ER-A19F-06 1 115268872 115268872 C T CSDE1 Missense_Mutation p.E580K 0.41 deleterious(0) possibly_damaging(0.805) TCGA-ER-A19F-06 1 115455667 115455667 G A SYCP1 Missense_Mutation p.E515K 0.38 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 1 116193988 116193988 G A VANGL1 5'UTR 0.41 TCGA-ER-A19F-06 1 120345554 120345554 C T REG4 Intron 0.40 TCGA-ER-A19F-06 1 12806420 12806420 G A C1orf158 Silent p.P14P 0.34 TCGA-ER-A19F-06 1 12884947 12884947 C T PRAMEF11 Nonsense_Mutation p.W388* 0.44 TCGA-ER-A19F-06 1 12907728 12907728 C T HNRNPCL1 Missense_Mutation p.A139T 0.40 deleterious(0.04) probably_damaging(0.983) TCGA-ER-A19F-06 1 12955423 12955423 C T PRAMEF10 Missense_Mutation p.D86N 0.65 deleterious(0.02) probably_damaging(0.969) TCGA-ER-A19F-06 1 142713866 142713866 C T RP11-417J8.6 RNA 0.31 TCGA-ER-A19F-06 1 145532832 145532832 T C ITGA10 Splice_Site p.X383_splice 0.28 TCGA-ER-A19F-06 1 149760090 149760090 A G FCGR1A Missense_Mutation p.N159S 0.20 tolerated(0.14) benign(0.024) TCGA-ER-A19F-06 1 150955615 150955615 C T ANXA9 Missense_Mutation p.L12F 0.58 deleterious(0.01) possibly_damaging(0.856) TCGA-ER-A19F-06 1 151006312 151006312 C T PRUNE Missense_Mutation p.P322S 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19F-06 1 151504875 151504875 C T CGN Intron 0.32 TCGA-ER-A19F-06 1 152185453 152185453 G A HRNR 3'UTR 0.28 TCGA-ER-A19F-06 1 152279104 152279104 C T FLG Missense_Mutation p.G2753E 0.44 benign(0.343) TCGA-ER-A19F-06 1 152285957 152285957 G A FLG Missense_Mutation p.L469F 0.30 probably_damaging(0.963) TCGA-ER-A19F-06 1 152323424 152323424 C T FLG2 Missense_Mutation p.G2280R 0.54 benign(0.3) TCGA-ER-A19F-06 1 153723710 153723710 G A INTS3 Missense_Mutation p.E242K 0.52 deleterious(0.01) possibly_damaging(0.778) TCGA-ER-A19F-06 1 153941080 153941080 G A CREB3L4 Missense_Mutation p.E27K 0.31 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-ER-A19F-06 1 155006469 155006469 C T DCST1 5'UTR 0.45 TCGA-ER-A19F-06 1 155631127 155631127 C T YY1AP1 Missense_Mutation p.E461K 0.50 deleterious(0.01) probably_damaging(0.962) TCGA-ER-A19F-06 1 156594495 156594495 G A HAPLN2 Missense_Mutation p.R220Q 0.38 tolerated(0.61) possibly_damaging(0.462) TCGA-ER-A19F-06 1 156917573 156917573 C T ARHGEF11 Missense_Mutation p.E777K 0.57 deleterious(0.01) probably_damaging(0.942) TCGA-ER-A19F-06 1 157811542 157811542 C T CD5L 5'UTR 0.80 TCGA-ER-A19F-06 1 158326431 158326431 C G CD1E Intron 0.44 TCGA-ER-A19F-06 1 158436191 158436191 C T OR10K1 Silent p.I280I 0.35 TCGA-ER-A19F-06 1 158609699 158609699 G A SPTA1 Silent p.F1612F 0.59 TCGA-ER-A19F-06 1 158614107 158614107 G A SPTA1 Missense_Mutation p.S1425F 0.64 deleterious(0.05) benign(0.016) TCGA-ER-A19F-06 1 158615073 158615073 C T SPTA1 Missense_Mutation p.E1367K 0.48 tolerated(0.73) benign(0.094) TCGA-ER-A19F-06 1 158725383 158725383 G A OR6K6 Missense_Mutation p.G260S 0.30 tolerated(0.12) possibly_damaging(0.841) TCGA-ER-A19F-06 1 158746637 158746637 C T OR6N2 Silent p.K263K 0.36 TCGA-ER-A19F-06 1 159169596 159169596 C T CADM3 Silent p.I370I 0.35 TCGA-ER-A19F-06 1 159284246 159284246 G A OR10J3 Silent p.S68S 0.20 TCGA-ER-A19F-06 1 159901383 159901383 C T IGSF9 Missense_Mutation p.G458E 0.59 tolerated(0.16) benign(0.216) TCGA-ER-A19F-06 1 160105253 160105253 G A ATP1A2 Silent p.G715G 0.55 TCGA-ER-A19F-06 1 160250033 160250033 G A PEX19 Missense_Mutation p.P200S 0.22 deleterious(0) possibly_damaging(0.819) TCGA-ER-A19F-06 1 160326137 160326137 G A NCSTN Missense_Mutation p.G547S 0.34 tolerated(0.21) benign(0.004) TCGA-ER-A19F-06 1 161010635 161010635 C G USF1 Silent p.R196R 0.25 TCGA-ER-A19F-06 1 161518410 161518410 C T FCGR3A Silent p.K76K 0.30 TCGA-ER-A19F-06 1 167829070 167829070 A G ADCY10 Missense_Mutation p.I624T 0.63 tolerated(0.5) benign(0.001) TCGA-ER-A19F-06 1 168670275 168670275 G A DPT Silent p.T173T 0.55 TCGA-ER-A19F-06 1 17084074 17084074 C T MST1L RNA 0.09 TCGA-ER-A19F-06 1 171086447 171086447 C T FMO3 Silent p.T488T 0.14 TCGA-ER-A19F-06 1 172501872 172501872 G A SUCO 5'Flank 0.24 TCGA-ER-A19F-06 1 173493114 173493114 G A SLC9C2 Silent p.F878F 0.52 TCGA-ER-A19F-06 1 173883882 173883882 G A SERPINC1 Missense_Mutation p.P73S 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-ER-A19F-06 1 175049373 175049373 C T TNN Nonsense_Mutation p.Q287* 0.16 TCGA-ER-A19F-06 1 176661407 176661407 C T PAPPA2 Silent p.S859S 0.20 TCGA-ER-A19F-06 1 176664920 176664920 C T PAPPA2 Missense_Mutation p.R891C 0.65 tolerated(0.17) possibly_damaging(0.724) TCGA-ER-A19F-06 1 179603722 179603722 G T TDRD5 Missense_Mutation p.K419N 0.26 deleterious(0) possibly_damaging(0.662) TCGA-ER-A19F-06 1 180003091 180003091 T G CEP350 Missense_Mutation p.S1274A 0.23 benign(0.265) TCGA-ER-A19F-06 1 180003092 180003092 C T CEP350 Missense_Mutation p.S1274F 0.23 possibly_damaging(0.836) TCGA-ER-A19F-06 1 180165989 180165989 G A QSOX1 Silent p.E687E 0.63 TCGA-ER-A19F-06 1 181750643 181750643 C T CACNA1E Missense_Mutation p.S1783F 0.64 tolerated(0.14) benign(0.001) TCGA-ER-A19F-06 1 183881362 183881362 C T RGL1 Missense_Mutation p.S605F 0.57 tolerated(0.42) benign(0.094) TCGA-ER-A19F-06 1 184775092 184775092 G A FAM129A Silent p.L478L 0.30 TCGA-ER-A19F-06 1 18808644 18808644 C T KLHDC7A Missense_Mutation p.P390L 0.45 tolerated(0.25) benign(0.006) TCGA-ER-A19F-06 1 19567577 19567577 C T EMC1 Missense_Mutation p.G190E 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 1 19567578 19567578 C T EMC1 Missense_Mutation p.G190R 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 1 19632545 19632545 G A AKR7A2 Silent p.A295A 0.42 TCGA-ER-A19F-06 1 196694307 196694307 G A CFH Missense_Mutation p.D585N 0.71 tolerated(0.14) benign(0.032) TCGA-ER-A19F-06 1 196881972 196881972 G A CFHR4 Missense_Mutation p.G366E 0.48 deleterious(0.02) probably_damaging(0.947) TCGA-ER-A19F-06 1 196918710 196918710 C T CFHR2 Missense_Mutation p.P62S 0.64 deleterious(0.05) probably_damaging(0.999) TCGA-ER-A19F-06 1 196918756 196918756 G A CFHR2 Nonsense_Mutation p.W77* 0.16 TCGA-ER-A19F-06 1 197029611 197029611 G A F13B Silent p.T230T 0.54 TCGA-ER-A19F-06 1 200090020 200090020 C T NR5A2 Missense_Mutation p.R439C 0.28 deleterious(0.01) possibly_damaging(0.591) TCGA-ER-A19F-06 1 200969524 200969524 C T KIF21B Missense_Mutation p.R560K 0.28 tolerated(0.63) possibly_damaging(0.815) TCGA-ER-A19F-06 1 201047096 201047096 C T CACNA1S Silent p.E510E 0.57 TCGA-ER-A19F-06 1 201184788 201184788 G A IGFN1 Nonsense_Mutation p.W3039* 0.30 TCGA-ER-A19F-06 1 201356205 201356205 C T LAD1 Missense_Mutation p.R95Q 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-ER-A19F-06 1 202702783 202702783 G T KDM5B Missense_Mutation p.P1219T 0.20 deleterious(0.04) possibly_damaging(0.777) TCGA-ER-A19F-06 1 203029523 203029523 C T PPFIA4 Missense_Mutation p.S415F 0.58 deleterious(0) probably_damaging(0.948) TCGA-ER-A19F-06 1 203055032 203055032 C T MYOG Missense_Mutation p.E20K 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A19F-06 1 204410671 204410671 G A PIK3C2B Silent p.S1059S 0.68 TCGA-ER-A19F-06 1 205306583 205306583 C T KLHDC8A Missense_Mutation p.G333S 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 1 205884232 205884232 G A SLC26A9 Silent p.L818L 0.49 TCGA-ER-A19F-06 1 207105032 207105032 G A PIGR Silent p.S708S 0.54 TCGA-ER-A19F-06 1 207850751 207850751 G A CR1L Missense_Mutation p.E39K 0.22 tolerated(0.41) benign(0.159) TCGA-ER-A19F-06 1 2103567 2103567 C T PRKCZ Silent p.L379L 0.35 TCGA-ER-A19F-06 1 211952371 211952371 C T LPGAT1 Missense_Mutation p.G248D 0.21 tolerated(0.28) probably_damaging(0.954) TCGA-ER-A19F-06 1 212860307 212860307 C T BATF3 Silent p.L70L 0.63 TCGA-ER-A19F-06 1 214791977 214791977 C T CENPF Missense_Mutation p.P141S 0.48 benign(0.022) TCGA-ER-A19F-06 1 215847652 215847652 C T USH2A Missense_Mutation p.G4534E 0.60 probably_damaging(0.998) TCGA-ER-A19F-06 1 21889735 21889735 G A ALPL Missense_Mutation p.G144R 0.40 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 1 22156080 22156080 G A HSPG2 Missense_Mutation p.P3930S 0.29 probably_damaging(0.999) TCGA-ER-A19F-06 1 22169905 22169905 G A HSPG2 Silent p.N2881N 0.46 TCGA-ER-A19F-06 1 223402594 223402594 G A SUSD4 Silent p.I287I 0.28 TCGA-ER-A19F-06 1 22456166 22456166 G C WNT4 Missense_Mutation p.R86G 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 1 228503687 228503687 G A OBSCN Silent p.E5341E 0.59 TCGA-ER-A19F-06 1 228504468 228504468 G A OBSCN Silent p.Q5405Q 0.67 TCGA-ER-A19F-06 1 22902869 22902869 G A EPHA8 Missense_Mutation p.D107N 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 1 234573064 234573064 G A TARBP1 Missense_Mutation p.S730F 0.61 tolerated(0.72) benign(0.006) TCGA-ER-A19F-06 1 235860522 235860522 G A LYST Silent p.S3475S 0.33 TCGA-ER-A19F-06 1 236647116 236647116 C T EDARADD 3'Flank 0.51 TCGA-ER-A19F-06 1 236761208 236761208 G A HEATR1 Silent p.F191F 0.59 TCGA-ER-A19F-06 1 237774182 237774182 C T RYR2 Nonsense_Mutation p.Q1602* 0.71 TCGA-ER-A19F-06 1 241518996 241518996 T G RGS7 Intron 0.32 TCGA-ER-A19F-06 1 242287898 242287898 G A PLD5 Silent p.L269L 0.28 TCGA-ER-A19F-06 1 243675635 243675635 G A AKT3 Missense_Mutation p.P449S 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-ER-A19F-06 1 24383924 24383924 G A MYOM3 Missense_Mutation p.S1415F 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A19F-06 1 24495953 24495953 G A IFNLR1 Silent p.S107S 0.43 TCGA-ER-A19F-06 1 245865885 245865885 G A KIF26B Missense_Mutation p.D2102N 0.64 deleterious(0) unknown(0) TCGA-ER-A19F-06 1 247588449 247588449 C T NLRP3 Silent p.F568F 0.35 TCGA-ER-A19F-06 1 247614625 247614625 G A OR2B11 Silent p.L220L 0.27 TCGA-ER-A19F-06 1 247769009 247769009 G A OR2G3 Missense_Mutation p.G41E 0.36 deleterious(0) probably_damaging(0.983) TCGA-ER-A19F-06 1 248059135 248059135 T C OR2W3 Missense_Mutation p.Y83H 0.30 tolerated(0.05) benign(0.013) TCGA-ER-A19F-06 1 248059530 248059530 C T OR2W3 Silent p.I214I 0.55 TCGA-ER-A19F-06 1 248112261 248112261 C T OR2L8 Silent p.F34F 0.60 TCGA-ER-A19F-06 1 248201816 248201816 G A OR2L2 Missense_Mutation p.D83N 0.63 tolerated(1) benign(0.002) TCGA-ER-A19F-06 1 248308997 248308997 C T OR2M5 Missense_Mutation p.S183F 0.28 deleterious(0.02) benign(0.013) TCGA-ER-A19F-06 1 248570104 248570104 G A OR2T1 Missense_Mutation p.R270Q 0.26 tolerated(0.37) benign(0.037) TCGA-ER-A19F-06 1 248845270 248845270 G A OR14I1 Silent p.F112F 0.52 TCGA-ER-A19F-06 1 26135082 26135082 C T SEPN1 Silent p.L183L 0.30 TCGA-ER-A19F-06 1 27106861 27106861 C A ARID1A Silent p.R2158R 0.40 TCGA-ER-A19F-06 1 27679914 27679914 C T SYTL1 Missense_Mutation p.S495F 0.50 deleterious(0) probably_damaging(0.962) TCGA-ER-A19F-06 1 27679915 27679915 C T SYTL1 Silent p.S495S 0.50 TCGA-ER-A19F-06 1 28476903 28476903 G A PTAFR Silent p.I210I 0.50 TCGA-ER-A19F-06 1 2938476 2938476 G A ACTRT2 Missense_Mutation p.E76K 0.35 deleterious(0.04) benign(0.26) TCGA-ER-A19F-06 1 32167755 32167755 G A COL16A1 Missense_Mutation p.L14F 0.50 unknown(0) TCGA-ER-A19F-06 1 35881161 35881161 C T ZMYM4 Silent p.F1385F 0.33 TCGA-ER-A19F-06 1 36186542 36186542 C T C1orf216 5'Flank 0.45 TCGA-ER-A19F-06 1 36439063 36439063 C T AGO3 Silent p.F203F 0.48 TCGA-ER-A19F-06 1 38187411 38187411 G A EPHA10 Silent p.L689L 0.34 TCGA-ER-A19F-06 1 39824417 39824417 C T MACF1 Nonsense_Mutation p.Q1936* 0.40 TCGA-ER-A19F-06 1 39878534 39878534 C T KIAA0754 Missense_Mutation p.P730L 0.47 unknown(0) TCGA-ER-A19F-06 1 43213059 43213059 T A LEPRE1 Nonsense_Mutation p.R647* 0.42 TCGA-ER-A19F-06 1 43896717 43896717 C T SZT2 Silent p.P1567P 0.41 TCGA-ER-A19F-06 1 43907442 43907442 C T SZT2 Silent p.V2508V 0.32 TCGA-ER-A19F-06 1 44595563 44595563 C T KLF17 Missense_Mutation p.S207F 0.35 tolerated(0.06) probably_damaging(0.976) TCGA-ER-A19F-06 1 46499889 46499889 C T MAST2 Silent p.P1273P 0.54 TCGA-ER-A19F-06 1 46827414 46827414 A T NSUN4 Missense_Mutation p.T351S 0.34 deleterious(0.02) probably_damaging(0.945) TCGA-ER-A19F-06 1 54610383 54610383 C T CDCP2 Silent p.V61V 0.31 TCGA-ER-A19F-06 1 57378088 57378088 C T C8A Missense_Mutation p.H465Y 0.31 tolerated(0.57) benign(0.014) TCGA-ER-A19F-06 1 59922748 59922748 G A FGGY Missense_Mutation p.G224R 0.61 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 1 62675517 62675517 C T L1TD1 Silent p.F357F 0.39 TCGA-ER-A19F-06 1 62675616 62675616 G A L1TD1 Silent p.E390E 0.41 TCGA-ER-A19F-06 1 62739384 62739384 C T KANK4 Silent p.G464G 0.41 TCGA-ER-A19F-06 1 67155970 67155970 C T SGIP1 Missense_Mutation p.S514F 0.52 deleterious(0.01) probably_damaging(0.962) TCGA-ER-A19F-06 1 74715179 74715179 C T FPGT-TNNI3K Silent p.Y176Y 0.38 TCGA-ER-A19F-06 1 75086533 75086533 C T C1orf173 Silent p.G295G 0.40 TCGA-ER-A19F-06 1 75672280 75672280 T C SLC44A5 3'UTR 0.44 TCGA-ER-A19F-06 1 76194104 76194104 C T ACADM Missense_Mutation p.R21C 0.41 deleterious_low_confidence(0.05) benign(0.005) TCGA-ER-A19F-06 1 82431791 82431791 A T LPHN2 Missense_Mutation p.K672N 0.37 tolerated(0.17) benign(0.24) TCGA-ER-A19F-06 1 85817207 85817207 G A DDAH1 Silent p.I153I 0.38 TCGA-ER-A19F-06 1 86818611 86818611 T G ODF2L Silent p.I608I 0.58 TCGA-ER-A19F-06 1 89655736 89655736 G A GBP4 Silent p.F394F 0.37 TCGA-ER-A19F-06 20 1551666 1551666 C T SIRPB1 Missense_Mutation p.G290E 0.30 deleterious(0.02) possibly_damaging(0.64) TCGA-ER-A19F-06 20 2796465 2796465 C T C20orf141 3'UTR 0.27 TCGA-ER-A19F-06 20 29960908 29960908 G C DEFB118 Missense_Mutation p.V103L 0.36 tolerated(0.74) benign(0.417) TCGA-ER-A19F-06 20 29976959 29976959 G A DEFB119 Missense_Mutation p.R46C 0.44 deleterious(0) probably_damaging(0.968) TCGA-ER-A19F-06 20 31607446 31607446 C T BPIFB2 Missense_Mutation p.P324S 0.41 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 20 31607447 31607447 C T BPIFB2 Missense_Mutation p.P324L 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 20 31982865 31982865 G A CDK5RAP1 Missense_Mutation p.S121F 0.40 deleterious(0) probably_damaging(0.97) TCGA-ER-A19F-06 20 33578806 33578806 G A MYH7B Splice_Site p.X731_splice 0.37 TCGA-ER-A19F-06 20 33578807 33578807 G A MYH7B Missense_Mutation p.G731E 0.35 probably_damaging(1) TCGA-ER-A19F-06 20 34240927 34240927 C T RBM12 Missense_Mutation p.G773E 0.36 deleterious(0.03) unknown(0) TCGA-ER-A19F-06 20 34243230 34243230 G A RBM12 Silent p.I5I 0.44 TCGA-ER-A19F-06 20 35060169 35060169 G A DLGAP4 Missense_Mutation p.D17N 0.43 deleterious(0.03) possibly_damaging(0.763) TCGA-ER-A19F-06 20 35240542 35240542 C T C20orf24 Silent p.A116A 0.36 TCGA-ER-A19F-06 20 35240543 35240543 C T C20orf24 Missense_Mutation p.P117S 0.36 tolerated_low_confidence(0.83) benign(0.003) TCGA-ER-A19F-06 20 35444327 35444327 C T SOGA1 Silent p.G506G 0.43 TCGA-ER-A19F-06 20 40727169 40727169 G A PTPRT Silent p.F1246F 0.34 TCGA-ER-A19F-06 20 42344652 42344652 C T MYBL2 Silent p.F676F 0.42 TCGA-ER-A19F-06 20 43835771 43835771 G A SEMG1 Splice_Site p.X26_splice 0.33 TCGA-ER-A19F-06 20 43851778 43851778 T C SEMG2 Missense_Mutation p.V502A 0.32 tolerated(0.45) unknown(0) TCGA-ER-A19F-06 20 44507259 44507259 C T ZSWIM3 Missense_Mutation p.P688S 0.41 tolerated_low_confidence(0.66) benign(0.002) TCGA-ER-A19F-06 20 44515211 44515211 C T SPATA25 Missense_Mutation p.G210E 0.44 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-ER-A19F-06 20 47858689 47858689 C T DDX27 Missense_Mutation p.R719C 0.36 deleterious(0.01) possibly_damaging(0.855) TCGA-ER-A19F-06 20 50273534 50273534 C T ATP9A Silent p.E483E 0.47 TCGA-ER-A19F-06 20 50701609 50701609 C T ZFP64 Splice_Site p.X115_splice 0.28 TCGA-ER-A19F-06 20 52601967 52601967 G A BCAS1 Silent p.T333T 0.42 TCGA-ER-A19F-06 20 54824304 54824304 C T MC3R Silent p.L135L 0.44 TCGA-ER-A19F-06 20 55111285 55111285 C T FAM209B Nonsense_Mutation p.Q103* 0.37 TCGA-ER-A19F-06 20 57766570 57766570 C T ZNF831 Missense_Mutation p.H166Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 20 57769222 57769222 G A ZNF831 Missense_Mutation p.E1050K 0.55 tolerated(0.22) benign(0.028) TCGA-ER-A19F-06 20 5897513 5897513 G A CHGB Silent p.S46S 0.38 TCGA-ER-A19F-06 20 60503270 60503270 C T CDH4 Silent p.T598T 0.36 TCGA-ER-A19F-06 20 61511988 61511988 G A DIDO1 Missense_Mutation p.P1774S 0.42 probably_damaging(0.999) TCGA-ER-A19F-06 20 61528167 61528167 G A DIDO1 Silent p.F590F 0.46 TCGA-ER-A19F-06 20 62200605 62200605 G A HELZ2 Silent p.N328N 0.25 TCGA-ER-A19F-06 20 62737457 62737457 C T NPBWR2 Missense_Mutation p.R243Q 0.22 tolerated(0.22) benign(0.027) TCGA-ER-A19F-06 20 629332 629332 G A RP5-850E9.3 3'UTR 0.27 TCGA-ER-A19F-06 20 629333 629333 G A RP5-850E9.3 3'UTR 0.28 TCGA-ER-A19F-06 20 7866213 7866213 G A HAO1 Missense_Mutation p.L333F 0.47 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 20 9404511 9404511 C T PLCB4 Silent p.S800S 0.61 TCGA-ER-A19F-06 20 9496978 9496978 G A LAMP5 Missense_Mutation p.E149K 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19F-06 20 9561479 9561479 C T PAK7 Silent p.R101R 0.36 TCGA-ER-A19F-06 21 15013906 15013906 G A POTED 3'UTR 0.47 TCGA-ER-A19F-06 21 31813034 31813034 G A KRTAP15-1 Missense_Mutation p.R130K 0.32 tolerated(0.13) benign(0.23) TCGA-ER-A19F-06 21 33371423 33371423 C T HUNK Silent p.L691L 0.35 TCGA-ER-A19F-06 21 33974257 33974257 G A C21orf59 Silent p.A263A 0.39 TCGA-ER-A19F-06 21 38511016 38511016 T C TTC3 Splice_Site p.X553_splice 0.40 TCGA-ER-A19F-06 21 38538329 38538329 C T TTC3 Silent p.P1271P 0.44 TCGA-ER-A19F-06 21 40646331 40646331 T A BRWD1 Missense_Mutation p.I405F 0.41 deleterious(0) benign(0.383) TCGA-ER-A19F-06 21 40649245 40649245 G A BRWD1 Missense_Mutation p.H346Y 0.38 deleterious(0) possibly_damaging(0.885) TCGA-ER-A19F-06 21 41414514 41414514 C T DSCAM Missense_Mutation p.E1824K 0.47 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 21 41465660 41465660 G A DSCAM Missense_Mutation p.P1280S 0.33 deleterious(0.04) possibly_damaging(0.566) TCGA-ER-A19F-06 21 41465764 41465764 G A DSCAM Missense_Mutation p.S1245F 0.17 tolerated(1) benign(0.002) TCGA-ER-A19F-06 21 41719737 41719737 C T DSCAM Missense_Mutation p.G357E 0.49 tolerated(0.34) possibly_damaging(0.685) TCGA-ER-A19F-06 21 43802138 43802138 G A TMPRSS3 Intron 0.48 TCGA-ER-A19F-06 21 43838655 43838655 G A UBASH3A Missense_Mutation p.R328Q 0.50 tolerated(0.07) benign(0.093) TCGA-ER-A19F-06 21 43838656 43838656 G A UBASH3A Silent p.R328R 0.50 TCGA-ER-A19F-06 21 45846545 45846545 G A TRPM2 Silent p.T1266T 0.36 TCGA-ER-A19F-06 21 46058080 46058080 C T KRTAP10-10 Missense_Mutation p.S249F 0.46 deleterious(0.03) probably_damaging(0.978) TCGA-ER-A19F-06 21 47783490 47783490 G A PCNT Silent p.T750T 0.40 TCGA-ER-A19F-06 22 17119551 17119551 C T TPTEP1 RNA 0.22 TCGA-ER-A19F-06 22 18064157 18064157 G A SLC25A18 Silent p.E59E 0.28 TCGA-ER-A19F-06 22 18064158 18064158 G A SLC25A18 Missense_Mutation p.G60S 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 22 19197920 19197920 G A CLTCL1 Silent p.I1055I 0.51 TCGA-ER-A19F-06 22 23040834 23040834 G A IGLV2-23 Silent p.L94L 0.42 TCGA-ER-A19F-06 22 23615826 23615826 G A BCR Silent p.L660L 0.36 TCGA-ER-A19F-06 22 23615827 23615827 C A BCR Missense_Mutation p.L661M 0.35 deleterious(0.01) probably_damaging(0.961) TCGA-ER-A19F-06 22 23915331 23915331 G A IGLL1 3'UTR 0.42 TCGA-ER-A19F-06 22 26692895 26692895 C T SEZ6L Silent p.I337I 0.46 TCGA-ER-A19F-06 22 30977392 30977392 C T PES1 Missense_Mutation p.E251K 0.41 tolerated(0.44) probably_damaging(0.983) TCGA-ER-A19F-06 22 31524544 31524544 G A INPP5J Silent p.K331K 0.50 TCGA-ER-A19F-06 22 37334373 37334373 C T CSF2RB Silent p.S841S 0.43 TCGA-ER-A19F-06 22 37709560 37709560 G A CYTH4 3'UTR 0.51 TCGA-ER-A19F-06 22 37709561 37709561 G A CYTH4 3'UTR 0.50 TCGA-ER-A19F-06 22 37872944 37872944 G A MFNG Missense_Mutation p.P213S 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 22 38028055 38028055 C T GGA1 Silent p.F527F 0.42 TCGA-ER-A19F-06 22 38321969 38321969 C T MICALL1 Missense_Mutation p.P462S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19F-06 22 38374057 38374057 T C SOX10 Missense_Mutation p.K172E 0.33 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 22 38884057 38884057 T C DDX17 Missense_Mutation p.H504R 0.36 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 22 40827438 40827438 G A MKL1 Missense_Mutation p.S37L 0.42 deleterious(0) benign(0.094) TCGA-ER-A19F-06 22 42415416 42415416 C T WBP2NL Missense_Mutation p.S55L 0.49 deleterious(0.02) probably_damaging(0.988) TCGA-ER-A19F-06 22 46758968 46758968 C T CELSR1 3'UTR 0.38 TCGA-ER-A19F-06 22 51064664 51064664 G A ARSA Silent p.L299L 0.45 TCGA-ER-A19F-06 2 103040432 103040432 G A IL18RAP Missense_Mutation p.D78N 0.44 tolerated(0.42) benign(0.006) TCGA-ER-A19F-06 2 107040789 107040789 C T RGPD3 Missense_Mutation p.D1212N 0.45 deleterious(0.02) possibly_damaging(0.69) TCGA-ER-A19F-06 2 108487596 108487596 G A RGPD4 Missense_Mutation p.E1046K 0.39 deleterious(0.01) probably_damaging(0.915) TCGA-ER-A19F-06 2 109370326 109370326 C T RANBP2 Missense_Mutation p.P701S 0.39 tolerated(0.12) benign(0.004) TCGA-ER-A19F-06 2 109547439 109547439 G A EDAR Missense_Mutation p.P11L 0.28 tolerated_low_confidence(0.67) benign(0.001) TCGA-ER-A19F-06 2 113535611 113535611 G A IL1A Nonsense_Mutation p.Q190* 0.36 TCGA-ER-A19F-06 2 113984806 113984806 G A PAX8 Missense_Mutation p.P372L 0.44 deleterious(0) benign(0.225) TCGA-ER-A19F-06 2 119604387 119604387 C T EN1 Silent p.K119K 0.34 TCGA-ER-A19F-06 2 120221773 120221773 G A SCTR Missense_Mutation p.R188C 0.47 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 2 120223413 120223413 G A SCTR Missense_Mutation p.S152F 0.27 tolerated(0.11) benign(0.038) TCGA-ER-A19F-06 2 120720203 120720203 C T PTPN4 Silent p.H764H 0.44 TCGA-ER-A19F-06 2 125367393 125367393 C T CNTNAP5 Missense_Mutation p.S590F 0.48 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 2 127950676 127950676 C T CYP27C1 Silent p.V332V 0.46 TCGA-ER-A19F-06 2 128384654 128384654 C T MYO7B Silent p.V1414V 0.37 TCGA-ER-A19F-06 2 128474766 128474766 G A WDR33 Silent p.P944P 0.35 TCGA-ER-A19F-06 2 129026412 129026412 G A HS6ST1 Missense_Mutation p.P187L 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 2 130930247 130930247 G A SMPD4 Missense_Mutation p.P192L 0.34 deleterious(0.01) benign(0.007) TCGA-ER-A19F-06 2 130930248 130930248 G A SMPD4 Missense_Mutation p.P192S 0.34 tolerated(0.09) benign(0.056) TCGA-ER-A19F-06 2 131797938 131797938 C T ARHGEF4 Silent p.F343F 0.54 TCGA-ER-A19F-06 2 135781086 135781086 C T MAP3K19 Intron 0.27 TCGA-ER-A19F-06 2 136566649 136566649 G A LCT Missense_Mutation p.P1090S 0.47 deleterious(0.04) possibly_damaging(0.483) TCGA-ER-A19F-06 2 136614338 136614338 C T MCM6 Missense_Mutation p.R529Q 0.42 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 2 141777598 141777598 C T LRP1B Silent p.R621R 0.40 TCGA-ER-A19F-06 2 1426834 1426834 C T TPO Missense_Mutation p.R38C 0.25 tolerated(0.21) benign(0.001) TCGA-ER-A19F-06 2 143743579 143743579 G A KYNU Silent p.T297T 0.70 TCGA-ER-A19F-06 2 149243361 149243361 C T MBD5 Silent p.L966L 0.39 TCGA-ER-A19F-06 2 152470873 152470873 T C NEB Missense_Mutation p.K3840E 0.47 benign(0.445) TCGA-ER-A19F-06 2 160732021 160732021 G A LY75-CD302 Silent p.S636S 0.36 TCGA-ER-A19F-06 2 160869882 160869882 C T PLA2R1 Nonsense_Mutation p.W519* 0.33 TCGA-ER-A19F-06 2 165578631 165578631 G A COBLL1 Missense_Mutation p.P317L 0.33 deleterious(0.02) possibly_damaging(0.466) TCGA-ER-A19F-06 2 166165763 166165763 C T SCN2A Missense_Mutation p.P232S 0.38 tolerated(0.08) benign(0.249) TCGA-ER-A19F-06 2 166165764 166165764 C T SCN2A Missense_Mutation p.P232L 0.41 deleterious(0) possibly_damaging(0.894) TCGA-ER-A19F-06 2 168725993 168725993 C T B3GALT1 Silent p.S148S 0.39 TCGA-ER-A19F-06 2 170428488 170428488 G A FASTKD1 Silent p.L18L 0.44 TCGA-ER-A19F-06 2 175976345 175976345 C T ATF2 Missense_Mutation p.G260E 0.38 deleterious(0) benign(0.024) TCGA-ER-A19F-06 2 176948122 176948122 G A EVX2 Missense_Mutation p.P128L 0.30 deleterious(0) possibly_damaging(0.554) TCGA-ER-A19F-06 2 178534251 178534251 C T PDE11A Silent p.R844R 0.27 TCGA-ER-A19F-06 2 179426124 179426124 T C TTN Silent p.E28245E 0.37 TCGA-ER-A19F-06 2 179428394 179428394 T C TTN Missense_Mutation p.T27489A 0.50 TCGA-ER-A19F-06 2 179526509 179526509 T C TTN Missense_Mutation p.K12421R 0.36 TCGA-ER-A19F-06 2 179542873 179542873 C T TTN Missense_Mutation p.V11325M 0.38 TCGA-ER-A19F-06 2 179558353 179558353 A G TTN Missense_Mutation p.V10526A 0.61 TCGA-ER-A19F-06 2 179588002 179588002 C T TTN Silent p.G7244G 0.33 TCGA-ER-A19F-06 2 179591859 179591859 G A TTN Missense_Mutation p.P6745S 0.45 TCGA-ER-A19F-06 2 179638821 179638821 G A TTN Silent p.I2358I 0.27 TCGA-ER-A19F-06 2 182359477 182359477 C T ITGA4 Missense_Mutation p.S426L 0.44 tolerated(0.16) possibly_damaging(0.449) TCGA-ER-A19F-06 2 182765502 182765502 G A SSFA2 Missense_Mutation p.D195N 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 2 182780654 182780654 G A SSFA2 Missense_Mutation p.E763K 0.38 tolerated(0.05) probably_damaging(0.998) TCGA-ER-A19F-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.43 deleterious(0) probably_damaging(0.961) TCGA-ER-A19F-06 2 18765453 18765453 C T NT5C1B Silent p.R324R 0.44 TCGA-ER-A19F-06 2 192701073 192701073 C T SDPR Missense_Mutation p.G285E 0.46 deleterious(0.05) possibly_damaging(0.804) TCGA-ER-A19F-06 2 196689005 196689005 G A DNAH7 Missense_Mutation p.H3089Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 2 196771428 196771428 C T DNAH7 Missense_Mutation p.M1430I 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 2 196786910 196786910 T - DNAH7 Frame_Shift_Del p.E1280Kfs*4 0.14 TCGA-ER-A19F-06 2 197654648 197654648 G A GTF3C3 Silent p.L228L 0.39 TCGA-ER-A19F-06 2 198265465 198265465 A G SF3B1 Missense_Mutation p.Y898H 0.22 tolerated(0.11) benign(0.151) TCGA-ER-A19F-06 2 202093850 202093850 C T CASP10 3'UTR 0.49 TCGA-ER-A19F-06 2 207564565 207564565 G A DYTN Missense_Mutation p.S202F 0.40 deleterious(0) possibly_damaging(0.863) TCGA-ER-A19F-06 2 210968836 210968836 C T KANSL1L Missense_Mutation p.E474K 0.38 deleterious(0) probably_damaging(0.963) TCGA-ER-A19F-06 2 211069406 211069406 C T ACADL Missense_Mutation p.D257N 0.50 deleterious(0) possibly_damaging(0.883) TCGA-ER-A19F-06 2 211179810 211179810 C T MYL1 5'UTR 0.41 TCGA-ER-A19F-06 2 211302519 211302519 G A LANCL1 Silent p.F256F 0.50 TCGA-ER-A19F-06 2 21232326 21232326 C T APOB Missense_Mutation p.E2472K 0.39 benign(0.024) TCGA-ER-A19F-06 2 212652880 212652880 G A ERBB4 Silent p.I142I 0.43 TCGA-ER-A19F-06 2 217001835 217001835 C T XRCC5 Silent p.L380L 0.33 TCGA-ER-A19F-06 2 217281010 217281010 T C SMARCAL1 Missense_Mutation p.M281T 0.44 tolerated(0.08) possibly_damaging(0.799) TCGA-ER-A19F-06 2 220356855 220356855 T A SPEG Missense_Mutation p.Y3162N 0.31 probably_damaging(0.999) TCGA-ER-A19F-06 2 227942694 227942694 G A COL4A4 Missense_Mutation p.P635S 0.49 probably_damaging(0.96) TCGA-ER-A19F-06 2 228860340 228860340 G A SPHKAP Missense_Mutation p.P1507S 0.30 tolerated(0.15) benign(0.066) TCGA-ER-A19F-06 2 231077610 231077610 G A SP110 Missense_Mutation p.S150L 0.44 tolerated(0.11) possibly_damaging(0.504) TCGA-ER-A19F-06 2 233748746 233748746 C T NGEF Missense_Mutation p.E516K 0.40 tolerated(0.07) possibly_damaging(0.652) TCGA-ER-A19F-06 2 234775390 234775390 G A MSL3P1 RNA 0.53 TCGA-ER-A19F-06 2 234969029 234969029 G A SPP2 Missense_Mutation p.R117K 0.43 deleterious(0.02) probably_damaging(0.977) TCGA-ER-A19F-06 2 239974707 239974707 G A HDAC4 3'UTR 0.35 TCGA-ER-A19F-06 2 242206277 242206277 G A HDLBP Missense_Mutation p.S3F 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A19F-06 2 242689563 242689563 C T D2HGDH Intron 0.37 TCGA-ER-A19F-06 2 26703657 26703657 C T OTOF Silent p.S600S 0.32 TCGA-ER-A19F-06 2 27447350 27447350 G A CAD Missense_Mutation p.G416S 0.35 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 2 27676565 27676565 G T IFT172 Missense_Mutation p.D1251E 0.41 tolerated(1) benign(0.001) TCGA-ER-A19F-06 2 27700945 27700945 T C IFT172 Missense_Mutation p.I362V 0.45 tolerated(0.39) benign(0.017) TCGA-ER-A19F-06 2 27801313 27801313 G A C2orf16 Missense_Mutation p.G625E 0.43 tolerated(0.32) benign(0.023) TCGA-ER-A19F-06 2 27802577 27802577 G T C2orf16 Missense_Mutation p.M1046I 0.42 tolerated(0.18) benign(0.203) TCGA-ER-A19F-06 2 27802578 27802578 G A C2orf16 Missense_Mutation p.E1047K 0.38 tolerated(0.06) benign(0.374) TCGA-ER-A19F-06 2 28741348 28741348 C T PLB1 Missense_Mutation p.P45S 0.43 tolerated(0.25) benign(0.011) TCGA-ER-A19F-06 2 29240726 29240726 G A FAM179A Missense_Mutation p.D422N 0.33 tolerated(1) benign(0) TCGA-ER-A19F-06 2 29366724 29366724 C T CLIP4 Silent p.L266L 0.39 TCGA-ER-A19F-06 2 37285625 37285625 G A HEATR5B Silent p.I676I 0.39 TCGA-ER-A19F-06 2 47300885 47300885 G A TTC7A Silent p.K800K 0.37 TCGA-ER-A19F-06 2 48874116 48874116 G A STON1-GTF2A1L Missense_Mutation p.G1009R 0.38 tolerated(0.08) benign(0.134) TCGA-ER-A19F-06 2 50850507 50850507 C T NRXN1 Missense_Mutation p.G393E 0.35 tolerated(0.13) probably_damaging(1) TCGA-ER-A19F-06 2 55404787 55404787 C T CLHC1 Missense_Mutation p.M505I 0.49 tolerated(0.4) benign(0.059) TCGA-ER-A19F-06 2 58359036 58359036 C T VRK2 Missense_Mutation p.P257L 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 2 60689430 60689430 G A BCL11A Missense_Mutation p.P206L 0.42 tolerated(0.06) possibly_damaging(0.625) TCGA-ER-A19F-06 2 61002230 61002230 C T PAPOLG Silent p.T222T 0.19 TCGA-ER-A19F-06 2 69002198 69002198 G A ARHGAP25 Intron 0.29 TCGA-ER-A19F-06 2 71780979 71780979 T G DYSF Missense_Mutation p.V676G 0.57 deleterious(0) probably_damaging(0.994) TCGA-ER-A19F-06 2 71892337 71892337 C T DYSF Silent p.L1740L 0.37 TCGA-ER-A19F-06 2 71892338 71892338 C T DYSF Missense_Mutation p.L1741F 0.38 deleterious(0.02) possibly_damaging(0.843) TCGA-ER-A19F-06 2 74657620 74657620 C T RTKN Silent p.K133K 0.41 TCGA-ER-A19F-06 2 74746699 74746699 G A DQX1 Missense_Mutation p.S597L 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 2 79349995 79349995 C T REG1A Missense_Mutation p.S117F 0.38 deleterious(0.02) probably_damaging(0.983) TCGA-ER-A19F-06 2 86371633 86371633 C T IMMT Missense_Mutation p.E679K 0.44 tolerated(0.19) benign(0.049) TCGA-ER-A19F-06 2 87085475 87085475 C T CD8B Missense_Mutation p.M36I 0.40 tolerated(0.17) benign(0.195) TCGA-ER-A19F-06 2 88402614 88402614 C T SMYD1 Missense_Mutation p.S309F 0.41 deleterious(0) probably_damaging(0.987) TCGA-ER-A19F-06 2 90077822 90077822 C T IGKV3D-20 Missense_Mutation p.P16S 0.30 tolerated(0.53) probably_damaging(1) TCGA-ER-A19F-06 2 90249246 90249246 C T IGKV1D-43 Missense_Mutation p.L68F 0.44 deleterious(0.04) benign(0.109) TCGA-ER-A19F-06 2 95494943 95494943 C T ANKRD20A8P Intron 0.30 TCGA-ER-A19F-06 2 97526640 97526640 G A SEMA4C Missense_Mutation p.S742F 0.54 tolerated(0.51) probably_damaging(0.999) TCGA-ER-A19F-06 3 102171970 102171970 G A ZPLD1 Missense_Mutation p.G121E 0.48 deleterious(0.02) benign(0.222) TCGA-ER-A19F-06 3 105438891 105438891 C T CBLB Silent p.K469K 0.52 TCGA-ER-A19F-06 3 107096864 107096864 G A CCDC54 Missense_Mutation p.E144K 0.53 deleterious(0.01) possibly_damaging(0.891) TCGA-ER-A19F-06 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.37 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-ER-A19F-06 3 108682267 108682267 G A MORC1 Silent p.L931L 0.34 TCGA-ER-A19F-06 3 111693387 111693387 G T PHLDB2 Missense_Mutation p.G1247C 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 3 112253111 112253111 G A ATG3 Intron 0.36 TCGA-ER-A19F-06 3 112546307 112546307 G A CD200R1L Missense_Mutation p.R113C 0.51 deleterious(0.01) possibly_damaging(0.586) TCGA-ER-A19F-06 3 113656944 113656944 G A GRAMD1C Missense_Mutation p.E549K 0.47 tolerated(0.34) benign(0.005) TCGA-ER-A19F-06 3 115561418 115561418 G A LSAMP Silent p.P219P 0.48 TCGA-ER-A19F-06 3 120957838 120957838 C T STXBP5L Missense_Mutation p.P402L 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A19F-06 3 121342150 121342150 G A FBXO40 Missense_Mutation p.R625K 0.34 tolerated(0.6) benign(0.002) TCGA-ER-A19F-06 3 121415004 121415004 C T GOLGB1 Missense_Mutation p.D1456N 0.42 benign(0.015) TCGA-ER-A19F-06 3 121707255 121707255 C T ILDR1 Missense_Mutation p.E534K 0.31 deleterious(0.03) benign(0.001) TCGA-ER-A19F-06 3 122002653 122002653 C T CASR Missense_Mutation p.L628F 0.35 tolerated(0.11) benign(0.013) TCGA-ER-A19F-06 3 123512611 123512611 G A MYLK Silent p.S26S 0.47 TCGA-ER-A19F-06 3 124165124 124165124 G A KALRN Splice_Site p.X1141_splice 0.44 TCGA-ER-A19F-06 3 124630988 124630988 C T MUC13 Silent p.K404K 0.30 TCGA-ER-A19F-06 3 126155162 126155162 G A CCDC37 Missense_Mutation p.R584Q 0.42 tolerated(0.37) benign(0.002) TCGA-ER-A19F-06 3 126708300 126708300 C G PLXNA1 Missense_Mutation p.D288E 0.37 tolerated(0.24) probably_damaging(0.985) TCGA-ER-A19F-06 3 12869058 12869058 C T CAND2 Silent p.F1110F 0.40 TCGA-ER-A19F-06 3 129202459 129202459 C T IFT122 Silent p.V646V 1.00 TCGA-ER-A19F-06 3 138351881 138351881 T C FAIM Missense_Mutation p.L201P 0.77 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 3 138724486 138724486 C T PRR23A Missense_Mutation p.G209R 0.56 tolerated(1) benign(0) TCGA-ER-A19F-06 3 139894811 139894811 G A CLSTN2 Nonsense_Mutation p.W43* 0.71 TCGA-ER-A19F-06 3 140282952 140282952 G A CLSTN2 Missense_Mutation p.D878N 0.63 tolerated(0.05) benign(0.353) TCGA-ER-A19F-06 3 142503749 142503749 C T TRPC1 Silent p.I388I 0.44 TCGA-ER-A19F-06 3 143550953 143550953 T A SLC9A9 Missense_Mutation p.N96Y 0.49 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 3 148577634 148577634 T G CPB1 Missense_Mutation p.Y367D 0.41 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 3 15115607 15115607 G A ZFYVE20 Silent p.F679F 0.41 TCGA-ER-A19F-06 3 151160963 151160963 A G IGSF10 Silent p.G1924G 0.34 TCGA-ER-A19F-06 3 155200384 155200384 G A PLCH1 Missense_Mutation p.S1152F 0.41 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-ER-A19F-06 3 155282849 155282849 T C PLCH1 Silent p.E296E 0.27 TCGA-ER-A19F-06 3 155282851 155282851 C T PLCH1 Missense_Mutation p.E296K 0.25 tolerated(0.11) probably_damaging(0.986) TCGA-ER-A19F-06 3 159605601 159605601 A T IQCJ-SCHIP1 Missense_Mutation p.E443D 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-ER-A19F-06 3 159605602 159605602 G A IQCJ-SCHIP1 Missense_Mutation p.A444T 0.40 tolerated(0.09) probably_damaging(0.996) TCGA-ER-A19F-06 3 164773008 164773008 C T SI Missense_Mutation p.E496K 0.23 tolerated(0.46) benign(0.002) TCGA-ER-A19F-06 3 164906436 164906436 G A SLITRK3 Missense_Mutation p.S728F 0.38 deleterious(0.01) benign(0.037) TCGA-ER-A19F-06 3 168833494 168833494 C T MECOM Missense_Mutation p.M599I 0.30 tolerated(0.07) benign(0.001) TCGA-ER-A19F-06 3 170150515 170150515 C T CLDN11 Missense_Mutation p.P199S 0.44 deleterious(0.04) probably_damaging(0.992) TCGA-ER-A19F-06 3 17109548 17109548 C T PLCL2 Silent p.T939T 0.25 TCGA-ER-A19F-06 3 183217613 183217613 G A KLHL6 Silent p.I304I 0.35 TCGA-ER-A19F-06 3 184298565 184298565 C T EPHB3 Missense_Mutation p.R813W 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 3 18462346 18462346 G A SATB1 Silent p.S38S 0.39 TCGA-ER-A19F-06 3 187420021 187420021 C T RTP2 5'UTR 0.60 TCGA-ER-A19F-06 3 189526244 189526244 G A TP63 Missense_Mutation p.D170N 0.44 tolerated(0.13) probably_damaging(0.997) TCGA-ER-A19F-06 3 190122569 190122569 G A CLDN16 Missense_Mutation p.R149Q 0.37 deleterious(0.01) probably_damaging(0.954) TCGA-ER-A19F-06 3 193207550 193207550 G A ATP13A4 Missense_Mutation p.S236F 0.34 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 3 194118498 194118498 G A GP5 Silent p.L172L 0.36 TCGA-ER-A19F-06 3 195515738 195515738 A G MUC4 Missense_Mutation p.S905P 0.44 unknown(0) TCGA-ER-A19F-06 3 196199338 196199338 G A RNF168 Silent p.A356A 0.51 TCGA-ER-A19F-06 3 19924167 19924167 G A EFHB Missense_Mutation p.R735C 0.50 tolerated(0.08) benign(0.066) TCGA-ER-A19F-06 3 20136881 20136881 T A KAT2B Missense_Mutation p.V186D 0.32 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 3 20193934 20193934 G T KAT2B Nonsense_Mutation p.E806* 0.41 TCGA-ER-A19F-06 3 21552419 21552419 C A ZNF385D Missense_Mutation p.D125Y 0.45 deleterious(0) possibly_damaging(0.552) TCGA-ER-A19F-06 3 3170788 3170788 C T TRNT1 Missense_Mutation p.L22F 0.40 tolerated_low_confidence(0.75) benign(0.006) TCGA-ER-A19F-06 3 35763143 35763143 A T ARPP21 Missense_Mutation p.S314C 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 3 38647623 38647623 C T SCN5A Missense_Mutation p.G386E 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 3 38739732 38739732 G A SCN10A Missense_Mutation p.S1660L 0.43 deleterious(0) probably_damaging(0.99) TCGA-ER-A19F-06 3 38753718 38753718 G A SCN10A Silent p.F1341F 0.53 TCGA-ER-A19F-06 3 39226980 39226980 G A XIRP1 Silent p.P1319P 0.46 TCGA-ER-A19F-06 3 43389865 43389875 AGTTTTTCTCT - SNRK Frame_Shift_Del p.K705Rfs*9 0.45 TCGA-ER-A19F-06 3 48205896 48205896 A G CDC25A Missense_Mutation p.V408A 0.39 tolerated(0.44) benign(0.215) TCGA-ER-A19F-06 3 48626411 48626411 G A COL7A1 Missense_Mutation p.R778C 0.35 unknown(0) TCGA-ER-A19F-06 3 48677117 48677117 G A CELSR3 Missense_Mutation p.P3301S 0.34 deleterious_low_confidence(0.01) benign(0.301) TCGA-ER-A19F-06 3 49149058 49149058 C T USP19 Missense_Mutation p.R1029Q 0.38 tolerated(0.33) benign(0.025) TCGA-ER-A19F-06 3 49362330 49362330 A C USP4 Silent p.G210G 0.39 TCGA-ER-A19F-06 3 49898401 49898401 C T CAMKV Missense_Mutation p.A205T 0.49 deleterious(0.01) benign(0.338) TCGA-ER-A19F-06 3 50220638 50220638 G A SEMA3F Silent p.Q346Q 0.48 TCGA-ER-A19F-06 3 52433001 52433001 G A DNAH1 Nonsense_Mutation p.W4075* 0.49 TCGA-ER-A19F-06 3 52470059 52470059 C T SEMA3G Missense_Mutation p.E637K 0.32 tolerated(0.08) benign(0.24) TCGA-ER-A19F-06 3 52472075 52472075 G A SEMA3G Silent p.Y550Y 0.35 TCGA-ER-A19F-06 3 52825621 52825621 G A ITIH1 Silent p.R861R 0.24 TCGA-ER-A19F-06 3 56468558 56468558 C T ERC2 Missense_Mutation p.E160K 0.45 deleterious(0.04) probably_damaging(0.945) TCGA-ER-A19F-06 3 58631246 58631246 C T FAM3D Missense_Mutation p.E85K 0.46 deleterious(0) probably_damaging(0.956) TCGA-ER-A19F-06 3 62142769 62142769 C T PTPRG Silent p.V237V 0.38 TCGA-ER-A19F-06 3 74347205 74347205 G A CNTN3 Silent p.I768I 0.41 TCGA-ER-A19F-06 3 81699050 81699050 C T GBE1 Missense_Mutation p.G151E 0.59 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 3 9057311 9057311 C T SRGAP3 Missense_Mutation p.E595K 0.31 deleterious(0) probably_damaging(0.994) TCGA-ER-A19F-06 3 9094804 9094804 G A SRGAP3 Silent p.S410S 0.51 TCGA-ER-A19F-06 3 97806869 97806869 C T OR5AC2 Missense_Mutation p.P285S 0.39 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 3 98492775 98492775 C T ST3GAL6 Nonsense_Mutation p.R95* 0.35 TCGA-ER-A19F-06 3 9969872 9969872 C T IL17RC Missense_Mutation p.S353F 0.37 deleterious(0) possibly_damaging(0.635) TCGA-ER-A19F-06 4 110880567 110880567 T A EGF Missense_Mutation p.L347Q 0.46 deleterious(0.01) possibly_damaging(0.504) TCGA-ER-A19F-06 4 113436414 113436414 C T NEUROG2 Missense_Mutation p.G73D 0.56 tolerated_low_confidence(0.53) unknown(0) TCGA-ER-A19F-06 4 11401533 11401533 T A HS3ST1 Nonsense_Mutation p.K33* 0.40 TCGA-ER-A19F-06 4 119059315 119059315 T A NDST3 Missense_Mutation p.I444N 0.59 deleterious(0) probably_damaging(0.961) TCGA-ER-A19F-06 4 119064801 119064801 C T NDST3 Nonsense_Mutation p.Q501* 0.58 TCGA-ER-A19F-06 4 119661857 119661857 G A SEC24D Silent p.H733H 0.36 TCGA-ER-A19F-06 4 123372940 123372940 G A IL2 Silent p.T143T 0.44 TCGA-ER-A19F-06 4 125590623 125590623 C T ANKRD50 Missense_Mutation p.G1270E 0.36 tolerated(0.59) benign(0.01) TCGA-ER-A19F-06 4 1369270 1369270 C T UVSSA Silent p.D469D 0.28 TCGA-ER-A19F-06 4 153268087 153268087 A G FBXW7 Missense_Mutation p.F241L 0.32 deleterious(0.03) benign(0.272) TCGA-ER-A19F-06 4 155507586 155507586 C T FGA Missense_Mutation p.G332E 0.36 deleterious_low_confidence(0.05) probably_damaging(0.972) TCGA-ER-A19F-06 4 155719262 155719262 G A RBM46 Missense_Mutation p.E151K 0.38 tolerated(0.68) possibly_damaging(0.699) TCGA-ER-A19F-06 4 156634535 156634535 T A GUCY1A3 Missense_Mutation p.F458I 0.58 deleterious(0) probably_damaging(0.996) TCGA-ER-A19F-06 4 164272412 164272412 C T NPY5R Silent p.F329F 0.38 TCGA-ER-A19F-06 4 166924680 166924680 G A TLL1 Missense_Mutation p.R257Q 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 4 175580303 175580303 G A GLRA3 Missense_Mutation p.L325F 0.40 deleterious(0.05) possibly_damaging(0.649) TCGA-ER-A19F-06 4 175649849 175649849 C T GLRA3 Missense_Mutation p.D90N 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19F-06 4 175897470 175897470 C T ADAM29 Missense_Mutation p.S265F 0.37 tolerated(0.28) benign(0.106) TCGA-ER-A19F-06 4 176572994 176572994 G A GPM6A Missense_Mutation p.R178C 0.46 deleterious(0) benign(0.059) TCGA-ER-A19F-06 4 177041242 177041242 C T WDR17 Missense_Mutation p.H202Y 0.32 tolerated(0.54) benign(0.044) TCGA-ER-A19F-06 4 183600989 183600989 G A TENM3 Silent p.G499G 0.32 TCGA-ER-A19F-06 4 183836694 183836694 C T DCTD Missense_Mutation p.D21N 0.33 tolerated(0.16) benign(0.001) TCGA-ER-A19F-06 4 186545620 186545620 G A SORBS2 Silent p.S417S 0.43 TCGA-ER-A19F-06 4 189020237 189020237 G A TRIML2 Silent p.I141I 0.39 TCGA-ER-A19F-06 4 20512168 20512168 C T SLIT2 Missense_Mutation p.P322L 0.45 deleterious(0.01) possibly_damaging(0.794) TCGA-ER-A19F-06 4 22749477 22749477 C T GBA3 Missense_Mutation p.P282L 0.43 tolerated(0.11) benign(0.012) TCGA-ER-A19F-06 4 248262 248262 C T ZNF876P RNA 0.47 TCGA-ER-A19F-06 4 25314443 25314443 C T ZCCHC4 Silent p.S4S 0.41 TCGA-ER-A19F-06 4 39000388 39000388 G A TMEM156 Missense_Mutation p.P77L 0.27 deleterious(0.01) benign(0.033) TCGA-ER-A19F-06 4 40832494 40832494 C T APBB2 Missense_Mutation p.E544K 0.48 deleterious(0.03) possibly_damaging(0.81) TCGA-ER-A19F-06 4 4190621 4190621 C T OTOP1 Nonsense_Mutation p.W583* 0.10 TCGA-ER-A19F-06 4 420088 420088 G A ABCA11P RNA 0.43 TCGA-ER-A19F-06 4 42403133 42403133 G A SHISA3 Missense_Mutation p.E128K 0.40 deleterious(0.02) benign(0.197) TCGA-ER-A19F-06 4 49040062 49040062 C T CWH43 Silent p.L556L 0.38 TCGA-ER-A19F-06 4 57898561 57898561 T C IGFBP7 Intron 0.45 TCGA-ER-A19F-06 4 6043934 6043934 C T JAKMIP1 Silent p.G683G 0.40 TCGA-ER-A19F-06 4 6107569 6107569 C T JAKMIP1 Silent p.Q85Q 0.47 TCGA-ER-A19F-06 4 658000 658000 G A PDE6B Missense_Mutation p.E707K 0.53 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.39 TCGA-ER-A19F-06 4 69433576 69433576 C T UGT2B17 Missense_Mutation p.M209I 0.92 tolerated(0.14) benign(0.007) TCGA-ER-A19F-06 4 70615468 70615468 G A SULT1B1 Missense_Mutation p.P116S 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-ER-A19F-06 4 74313277 74313285 AATTCATGC - AFP In_Frame_Del p.I315_A317del 0.45 TCGA-ER-A19F-06 4 78740510 78740510 G A CNOT6L 5'UTR 0.35 TCGA-ER-A19F-06 4 8288468 8288468 C T HTRA3 Silent p.I222I 0.44 TCGA-ER-A19F-06 4 83557909 83557909 C T SCD5 Missense_Mutation p.G213R 0.42 deleterious(0) benign(0.123) TCGA-ER-A19F-06 4 84369967 84369967 A G HELQ Missense_Mutation p.I387T 0.38 deleterious(0) probably_damaging(0.991) TCGA-ER-A19F-06 4 87023060 87023060 C T MAPK10 Missense_Mutation p.G184E 0.43 deleterious(0) probably_damaging(0.979) TCGA-ER-A19F-06 4 95201808 95201808 C T SMARCAD1 Silent p.F830F 0.42 TCGA-ER-A19F-06 4 995528 995528 G T IDUA Silent p.R217R 0.37 TCGA-ER-A19F-06 5 102493981 102493981 G A PPIP5K2 Missense_Mutation p.G527R 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-ER-A19F-06 5 102493982 102493982 G A PPIP5K2 Missense_Mutation p.G527E 0.32 deleterious(0) probably_damaging(0.961) TCGA-ER-A19F-06 5 102612106 102612106 G A C5orf30 Silent p.R162R 0.50 TCGA-ER-A19F-06 5 111600674 111600674 C T EPB41L4A Missense_Mutation p.G158E 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 5 121739515 121739515 C T SNCAIP Missense_Mutation p.P29S 0.42 tolerated(0.07) probably_damaging(0.998) TCGA-ER-A19F-06 5 121799218 121799218 C T SNCAIP 3'UTR 0.28 TCGA-ER-A19F-06 5 126883513 126883513 G T PRRC1 Missense_Mutation p.W343L 0.09 deleterious(0) probably_damaging(0.948) TCGA-ER-A19F-06 5 127623002 127623002 T C FBN2 Missense_Mutation p.K2293R 0.50 tolerated(1) benign(0.006) TCGA-ER-A19F-06 5 127624855 127624855 C A FBN2 Missense_Mutation p.G2201C 0.44 deleterious(0) probably_damaging(0.992) TCGA-ER-A19F-06 5 128351593 128351593 G A SLC27A6 Missense_Mutation p.D329N 0.21 tolerated(0.28) benign(0.007) TCGA-ER-A19F-06 5 131546162 131546162 G A P4HA2 Missense_Mutation p.S175L 0.47 tolerated(0.7) benign(0) TCGA-ER-A19F-06 5 132010149 132010149 A G IL4 Splice_Site p.X46_splice 0.33 TCGA-ER-A19F-06 5 132197738 132197738 C T GDF9 Missense_Mutation p.G303E 0.33 tolerated(0.33) benign(0.008) TCGA-ER-A19F-06 5 135602072 135602072 G A TRPC7 Missense_Mutation p.S394F 0.48 deleterious(0) probably_damaging(0.98) TCGA-ER-A19F-06 5 135692931 135692931 C T TRPC7 Missense_Mutation p.D49N 0.32 deleterious(0.01) possibly_damaging(0.875) TCGA-ER-A19F-06 5 13753464 13753464 C T DNAH5 Missense_Mutation p.D3584N 0.26 possibly_damaging(0.822) TCGA-ER-A19F-06 5 137728990 137728991 GC - KDM3B Frame_Shift_Del p.R921Vfs*5 0.30 TCGA-ER-A19F-06 5 13776791 13776791 C T DNAH5 Missense_Mutation p.E3044K 0.32 possibly_damaging(0.621) TCGA-ER-A19F-06 5 138661307 138661307 C T MATR3 Missense_Mutation p.P776L 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-ER-A19F-06 5 139815696 139815696 C T ANKHD1 Missense_Mutation p.S105L 0.26 unknown(0) TCGA-ER-A19F-06 5 140202936 140202936 G A PCDHA5 Missense_Mutation p.E526K 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.771) TCGA-ER-A19F-06 5 140216071 140216071 C T PCDHA7 Silent p.I701I 0.52 TCGA-ER-A19F-06 5 140229941 140229941 C T PCDHA9 Missense_Mutation p.P621S 0.53 deleterious_low_confidence(0.01) benign(0.1) TCGA-ER-A19F-06 5 140236762 140236762 G A PCDHA10 Missense_Mutation p.D377N 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19F-06 5 140480236 140480236 G A PCDHB3 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) benign(0.094) TCGA-ER-A19F-06 5 140516156 140516156 G A PCDHB5 Missense_Mutation p.M380I 0.34 tolerated_low_confidence(0.2) benign(0.003) TCGA-ER-A19F-06 5 140537758 140537758 C T PCDHB17 3'UTR 0.50 TCGA-ER-A19F-06 5 140710915 140710915 C T PCDHGA1 Missense_Mutation p.R222C 0.43 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-ER-A19F-06 5 140755684 140755684 C T PCDHGA6 Silent p.L678L 0.39 TCGA-ER-A19F-06 5 140810238 140810238 C T PCDHGA12 5'UTR 0.27 TCGA-ER-A19F-06 5 140857635 140857635 A G PCDHGC3 Missense_Mutation p.N651S 0.49 deleterious(0.02) benign(0.016) TCGA-ER-A19F-06 5 140865602 140865602 C T PCDHGC4 Missense_Mutation p.R288C 0.39 tolerated(0.14) probably_damaging(0.964) TCGA-ER-A19F-06 5 141019704 141019704 G T RELL2 Nonsense_Mutation p.G241* 0.38 TCGA-ER-A19F-06 5 141337251 141337251 C T PCDH12 Missense_Mutation p.E56K 0.43 tolerated(0.78) benign(0.015) TCGA-ER-A19F-06 5 145838453 145838453 T C TCERG1 Missense_Mutation p.Y149H 0.45 deleterious(0) probably_damaging(0.969) TCGA-ER-A19F-06 5 147486600 147486600 G A SPINK5 Missense_Mutation p.E494K 0.44 tolerated(0.05) possibly_damaging(0.757) TCGA-ER-A19F-06 5 147796606 147796606 C T FBXO38 Missense_Mutation p.S486L 0.27 deleterious(0) probably_damaging(0.974) TCGA-ER-A19F-06 5 149214868 149214868 C T PPARGC1B Missense_Mutation p.P583S 0.26 tolerated(0.31) benign(0.043) TCGA-ER-A19F-06 5 149214869 149214869 C T PPARGC1B Missense_Mutation p.P583L 0.27 deleterious(0) possibly_damaging(0.548) TCGA-ER-A19F-06 5 150924933 150924933 G A FAT2 Missense_Mutation p.H1919Y 0.50 possibly_damaging(0.623) TCGA-ER-A19F-06 5 150946169 150946169 G A FAT2 Missense_Mutation p.A775V 0.40 benign(0.026) TCGA-ER-A19F-06 5 151271933 151271933 G A GLRA1 Silent p.F41F 0.40 TCGA-ER-A19F-06 5 154267830 154267830 G A GEMIN5 Silent p.L1489L 0.43 TCGA-ER-A19F-06 5 158753751 158753751 C T IL12B Missense_Mutation p.V14I 0.40 tolerated(0.11) benign(0.02) TCGA-ER-A19F-06 5 160067517 160067517 G A ATP10B Silent p.I317I 0.38 TCGA-ER-A19F-06 5 167626893 167626893 C T TENM2 Missense_Mutation p.P1063S 0.39 tolerated(0.13) possibly_damaging(0.607) TCGA-ER-A19F-06 5 167674492 167674492 G A TENM2 Missense_Mutation p.G2183D 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 5 167915683 167915683 T A RARS Nonsense_Mutation p.L41* 0.51 TCGA-ER-A19F-06 5 168139336 168139336 G A SLIT3 Missense_Mutation p.S836F 0.47 deleterious(0) probably_damaging(0.99) TCGA-ER-A19F-06 5 169805604 169805604 G A KCNMB1 3'UTR 0.62 TCGA-ER-A19F-06 5 175305757 175305757 G A CPLX2 Missense_Mutation p.M5I 0.29 tolerated(0.12) benign(0.002) TCGA-ER-A19F-06 5 175958548 175958548 G A RNF44 Silent p.I127I 0.40 TCGA-ER-A19F-06 5 178408731 178408731 C T GRM6 Missense_Mutation p.R854Q 0.33 deleterious(0.01) benign(0.065) TCGA-ER-A19F-06 5 179303026 179303026 G A TBC1D9B Silent p.I598I 0.29 TCGA-ER-A19F-06 5 180166915 180166915 G A OR2Y1 Silent p.L48L 0.43 TCGA-ER-A19F-06 5 235406 235406 C T SDHA Silent p.P404P 0.37 TCGA-ER-A19F-06 5 31294328 31294328 T A CDH6 Missense_Mutation p.V163D 0.36 deleterious(0.01) benign(0.192) TCGA-ER-A19F-06 5 32061115 32061115 G A PDZD2 Missense_Mutation p.D776N 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 5 37019442 37019442 A T NIPBL Missense_Mutation p.Q1650H 0.37 tolerated(0.37) possibly_damaging(0.898) TCGA-ER-A19F-06 5 40979906 40979906 C T C7 Missense_Mutation p.H749Y 0.40 tolerated(0.18) benign(0.005) TCGA-ER-A19F-06 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.36 deleterious(0.03) probably_damaging(0.944) TCGA-ER-A19F-06 5 41009411 41009411 C T MROH2B Missense_Mutation p.D1131N 0.41 tolerated(0.16) benign(0.008) TCGA-ER-A19F-06 5 41313873 41313873 C T PLCXD3 Splice_Site p.X271_splice 0.31 TCGA-ER-A19F-06 5 42718865 42718865 G A GHR Missense_Mutation p.G419E 0.52 tolerated(0.65) benign(0.17) TCGA-ER-A19F-06 5 43488032 43488032 C T C5orf34 Missense_Mutation p.E567K 0.41 tolerated(0.17) benign(0.117) TCGA-ER-A19F-06 5 45262086 45262086 T A HCN1 Missense_Mutation p.E870D 0.45 tolerated_low_confidence(0.48) benign(0) TCGA-ER-A19F-06 5 45262144 45262144 G C HCN1 Missense_Mutation p.P851R 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A19F-06 5 50090706 50090706 C T PARP8 Missense_Mutation p.P295S 0.28 tolerated_low_confidence(0.08) benign(0.027) TCGA-ER-A19F-06 5 5146401 5146401 C T ADAMTS16 Silent p.L112L 0.36 TCGA-ER-A19F-06 5 52781787 52781787 C T FST Missense_Mutation p.S320L 0.54 tolerated(0.07) benign(0.003) TCGA-ER-A19F-06 5 53814630 53814630 C G SNX18 Missense_Mutation p.P283R 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 5 63509416 63509416 C T RNF180 Missense_Mutation p.P88L 0.38 tolerated(0.14) possibly_damaging(0.908) TCGA-ER-A19F-06 5 639225 639225 G A CEP72 Missense_Mutation p.A410T 0.35 tolerated(0.07) benign(0.003) TCGA-ER-A19F-06 5 66398379 66398379 C T MAST4 Silent p.P362P 0.37 TCGA-ER-A19F-06 5 66479238 66479238 C T CD180 Missense_Mutation p.G478E 0.36 deleterious(0.04) probably_damaging(0.952) TCGA-ER-A19F-06 5 71493252 71493252 C T MAP1B Missense_Mutation p.P1357L 0.40 benign(0.13) TCGA-ER-A19F-06 5 75913832 75913832 C T F2RL2 Missense_Mutation p.E234K 0.56 tolerated(0.33) benign(0.015) TCGA-ER-A19F-06 5 76645346 76645346 C T PDE8B Missense_Mutation p.L327F 0.38 tolerated(0.13) probably_damaging(1) TCGA-ER-A19F-06 5 77755108 77755108 C T SCAMP1 Missense_Mutation p.P259S 0.48 tolerated(0.1) benign(0.392) TCGA-ER-A19F-06 5 79446751 79446751 G A SERINC5 Missense_Mutation p.S336L 0.45 tolerated(0.12) benign(0.014) TCGA-ER-A19F-06 5 82816935 82816935 T A VCAN Missense_Mutation p.V937E 0.46 tolerated(0.15) benign(0.022) TCGA-ER-A19F-06 5 82817592 82817592 C T VCAN Missense_Mutation p.P1156L 0.33 deleterious(0) possibly_damaging(0.514) TCGA-ER-A19F-06 5 86690311 86690311 A G CCNH Intron 0.43 TCGA-ER-A19F-06 5 89943320 89943320 C T GPR98 Missense_Mutation p.R1010C 0.38 possibly_damaging(0.626) TCGA-ER-A19F-06 5 90012451 90012451 C T GPR98 Nonsense_Mutation p.Q3118* 0.44 TCGA-ER-A19F-06 5 90041002 90041002 G A GPR98 Silent p.K3563K 0.30 TCGA-ER-A19F-06 5 90046514 90046514 G A GPR98 Silent p.V3707V 0.37 TCGA-ER-A19F-06 6 102134192 102134192 G A GRIK2 Silent p.P305P 0.82 TCGA-ER-A19F-06 6 10784762 10784762 C T MAK Missense_Mutation p.E454K 0.51 tolerated(0.34) benign(0.01) TCGA-ER-A19F-06 6 110300401 110300401 G A GPR6 Missense_Mutation p.G29E 0.96 deleterious_low_confidence(0.02) benign(0.015) TCGA-ER-A19F-06 6 110300402 110300402 G A GPR6 Silent p.G29G 0.93 TCGA-ER-A19F-06 6 114378688 114378688 G A HS3ST5 Silent p.L258L 0.67 TCGA-ER-A19F-06 6 117248462 117248462 C T RFX6 Missense_Mutation p.H720Y 0.75 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-ER-A19F-06 6 117884359 117884359 C T GOPC 3'UTR 0.89 TCGA-ER-A19F-06 6 118588217 118588217 C T SLC35F1 Silent p.I179I 0.73 TCGA-ER-A19F-06 6 121560234 121560234 A G TBC1D32 Silent p.I782I 0.62 TCGA-ER-A19F-06 6 121560297 121560297 A G TBC1D32 Silent p.N761N 0.59 TCGA-ER-A19F-06 6 121768668 121768668 C T GJA1 Silent p.I225I 0.64 TCGA-ER-A19F-06 6 127898534 127898534 G A C6orf58 Silent p.L68L 1.00 TCGA-ER-A19F-06 6 13470526 13470526 G A AL583828.1 5'UTR 0.42 TCGA-ER-A19F-06 6 13612059 13612059 G A SIRT5 Missense_Mutation p.E299K 0.28 tolerated(0.53) benign(0.005) TCGA-ER-A19F-06 6 15513250 15513250 C T JARID2 Silent p.T1080T 0.22 TCGA-ER-A19F-06 6 163985820 163985820 C T QKI Intron 0.69 TCGA-ER-A19F-06 6 163985821 163985821 C T QKI Intron 0.75 TCGA-ER-A19F-06 6 25819768 25819768 C T SLC17A1 Missense_Mutation p.R167Q 0.21 tolerated(0.11) benign(0.343) TCGA-ER-A19F-06 6 29275391 29275391 C T OR14J1 Missense_Mutation p.P309S 0.56 tolerated(0.87) benign(0) TCGA-ER-A19F-06 6 29342984 29342984 C T OR12D3 Silent p.G27G 0.64 TCGA-ER-A19F-06 6 29408518 29408518 C T OR10C1 Silent p.S242S 0.31 TCGA-ER-A19F-06 6 29627375 29627375 G A MOG Missense_Mutation p.G123E 0.63 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 6 29976015 29976015 T C ZNRD1-AS1 Intron 0.37 TCGA-ER-A19F-06 6 30036459 30036459 C T PPP1R11 Silent p.G54G 0.31 TCGA-ER-A19F-06 6 30530349 30530349 G A PRR3 3'UTR 0.41 TCGA-ER-A19F-06 6 31734488 31734488 G A VWA7 Missense_Mutation p.P646S 0.57 tolerated(0.46) benign(0.006) TCGA-ER-A19F-06 6 31752211 31752211 G A VARS Silent p.F512F 0.28 TCGA-ER-A19F-06 6 31827680 31827680 G A NEU1 Missense_Mutation p.S355L 0.29 deleterious(0) possibly_damaging(0.685) TCGA-ER-A19F-06 6 32170241 32170241 G A NOTCH4 Missense_Mutation p.P1123S 0.32 tolerated(0.05) probably_damaging(0.998) TCGA-ER-A19F-06 6 34003584 34003584 G A GRM4 Missense_Mutation p.T768I 0.29 deleterious(0) possibly_damaging(0.883) TCGA-ER-A19F-06 6 38980282 38980282 G A DNAH8 Missense_Mutation p.R4311K 0.19 benign(0.023) TCGA-ER-A19F-06 6 40360141 40360141 C T LRFN2 Silent p.R637R 0.75 TCGA-ER-A19F-06 6 43484819 43484819 G A POLR1C 5'UTR 0.63 TCGA-ER-A19F-06 6 44102371 44102371 G A TMEM63B Missense_Mutation p.S17N 0.31 tolerated(0.47) benign(0.002) TCGA-ER-A19F-06 6 44337785 44337785 C T SPATS1 Intron 0.30 TCGA-ER-A19F-06 6 46129023 46129023 G A ENPP5 3'UTR 0.39 TCGA-ER-A19F-06 6 46593237 46593237 A G CYP39A1 Silent p.F283F 0.24 TCGA-ER-A19F-06 6 47541941 47541941 G A CD2AP Missense_Mutation p.R228Q 0.57 deleterious(0) possibly_damaging(0.656) TCGA-ER-A19F-06 6 47541942 47541942 G A CD2AP Silent p.R228R 0.57 TCGA-ER-A19F-06 6 47649087 47649087 C T GPR111 Silent p.I264I 0.57 TCGA-ER-A19F-06 6 47649422 47649422 G A GPR111 Missense_Mutation p.R376K 0.24 tolerated(0.2) benign(0.01) TCGA-ER-A19F-06 6 47680197 47680197 C T GPR115 Silent p.I135I 0.27 TCGA-ER-A19F-06 6 49754498 49754498 G A PGK2 Missense_Mutation p.P135S 0.23 tolerated(0.27) benign(0.004) TCGA-ER-A19F-06 6 50791406 50791406 C T TFAP2B Missense_Mutation p.P123L 0.21 tolerated(0.43) benign(0.039) TCGA-ER-A19F-06 6 54792370 54792370 G A FAM83B Missense_Mutation p.G225E 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 6 55039448 55039448 G A HCRTR2 Silent p.L21L 0.25 TCGA-ER-A19F-06 6 56044666 56044666 C T COL21A1 Missense_Mutation p.G117E 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 6 56915604 56915604 C T KIAA1586 Silent p.I46I 0.29 TCGA-ER-A19F-06 6 63991056 63991056 C T LGSN Missense_Mutation p.E134K 0.71 deleterious(0.01) possibly_damaging(0.574) TCGA-ER-A19F-06 6 7581358 7581358 G A DSP Silent p.R1645R 0.21 TCGA-ER-A19F-06 6 88173907 88173907 G A C6ORF165 Missense_Mutation p.G603E 0.88 tolerated(0.22) benign(0.164) TCGA-ER-A19F-06 6 88767377 88767377 G A SPACA1 Missense_Mutation p.E105K 0.79 deleterious(0) probably_damaging(0.999) TCGA-ER-A19F-06 6 97052706 97052706 T C FHL5 Silent p.P80P 0.73 TCGA-ER-A19F-06 7 100162594 100162594 A G AGFG2 Missense_Mutation p.T476A 0.37 tolerated(0.15) benign(0.006) TCGA-ER-A19F-06 7 100175319 100175319 G A LRCH4 Missense_Mutation p.P362S 0.35 tolerated(0.21) possibly_damaging(0.827) TCGA-ER-A19F-06 7 100175320 100175320 G A LRCH4 Silent p.V361V 0.36 TCGA-ER-A19F-06 7 100184219 100184219 C T FBXO24 5'Flank 0.43 TCGA-ER-A19F-06 7 100780770 100780770 G A SERPINE1 3'UTR 0.53 TCGA-ER-A19F-06 7 100780771 100780771 G A SERPINE1 3'UTR 0.53 TCGA-ER-A19F-06 7 104741913 104741913 T C KMT2E Silent p.F588F 0.43 TCGA-ER-A19F-06 7 107350632 107350632 C T SLC26A4 Silent p.S741S 0.40 TCGA-ER-A19F-06 7 112724689 112724689 T A GPR85 Missense_Mutation p.I30L 0.32 deleterious(0.02) benign(0.111) TCGA-ER-A19F-06 7 120935743 120935743 G A CPED1 3'UTR 0.32 TCGA-ER-A19F-06 7 123268983 123268983 T G ASB15 Missense_Mutation p.I312S 0.42 deleterious(0) possibly_damaging(0.529) TCGA-ER-A19F-06 7 123508836 123508836 T C HYAL4 Missense_Mutation p.L170P 0.43 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 7 124386527 124386527 C T GPR37 3'UTR 0.56 TCGA-ER-A19F-06 7 126173552 126173552 C T GRM8 Silent p.G628G 0.33 TCGA-ER-A19F-06 7 128641228 128641228 G A TNPO3 Missense_Mutation p.L253F 0.38 deleterious(0) probably_damaging(0.994) TCGA-ER-A19F-06 7 128845089 128845089 G A SMO Missense_Mutation p.V195M 0.40 deleterious(0.02) benign(0.012) TCGA-ER-A19F-06 7 138602208 138602208 A C KIAA1549 Missense_Mutation p.F722V 0.39 tolerated(0.16) benign(0.003) TCGA-ER-A19F-06 7 138603468 138603468 G A KIAA1549 Missense_Mutation p.P302S 0.32 tolerated(0.27) benign(0.017) TCGA-ER-A19F-06 7 139655310 139655310 C T TBXAS1 Missense_Mutation p.P245S 0.40 deleterious(0.03) benign(0.103) TCGA-ER-A19F-06 7 140125836 140125836 C T RAB19 Silent p.I180I 0.43 TCGA-ER-A19F-06 7 140481411 140481411 C T BRAF Missense_Mutation p.G466E 0.43 deleterious(0) probably_damaging(0.911) TCGA-ER-A19F-06 7 141536104 141536104 C T PRSS37 3'UTR 0.32 TCGA-ER-A19F-06 7 141740634 141740634 C T MGAM Missense_Mutation p.T829I 0.35 deleterious(0.01) benign(0.173) TCGA-ER-A19F-06 7 142168930 142168930 C T TRBV5-4 5'UTR 0.60 TCGA-ER-A19F-06 7 142176770 142176770 G A TRBV7-4 Silent p.C7C 0.49 TCGA-ER-A19F-06 7 142197610 142197610 G A TRBV11-2 RNA 0.24 TCGA-ER-A19F-06 7 142247269 142247269 C T TRBV7-3 Missense_Mutation p.E63K 0.51 TCGA-ER-A19F-06 7 142836727 142836727 G A PIP Missense_Mutation p.V145I 0.46 tolerated(0.68) benign(0.065) TCGA-ER-A19F-06 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.37 TCGA-ER-A19F-06 7 143657367 143657367 T A OR2F1 Missense_Mutation p.F102I 0.42 tolerated(0.09) possibly_damaging(0.477) TCGA-ER-A19F-06 7 143747613 143747613 G A OR2A5 Missense_Mutation p.G40E 0.50 deleterious(0.02) possibly_damaging(0.634) TCGA-ER-A19F-06 7 143771381 143771381 G A OR2A25 Silent p.Q23Q 0.31 TCGA-ER-A19F-06 7 14613949 14613949 C T DGKB Missense_Mutation p.S554N 0.37 deleterious(0) probably_damaging(0.962) TCGA-ER-A19F-06 7 149510776 149510776 C T SSPO RNA 0.67 TCGA-ER-A19F-06 7 149516409 149516409 C T SSPO RNA 0.33 TCGA-ER-A19F-06 7 150269457 150269457 C T GIMAP4 Missense_Mutation p.S100F 0.54 tolerated(0.7) benign(0.361) TCGA-ER-A19F-06 7 150553555 150553555 A G AOC1 5'UTR 0.35 TCGA-ER-A19F-06 7 150648096 150648096 G A KCNH2 Silent p.F686F 0.38 TCGA-ER-A19F-06 7 151879201 151879201 G A KMT2C Missense_Mutation p.S1915F 0.42 benign(0.24) TCGA-ER-A19F-06 7 17382555 17382555 G A AHR Missense_Mutation p.G805E 0.35 deleterious_low_confidence(0) benign(0.072) TCGA-ER-A19F-06 7 17833682 17833682 A - SNX13 Frame_Shift_Del p.L954Cfs*19 0.26 TCGA-ER-A19F-06 7 24747848 24747848 G A DFNA5 Silent p.F296F 0.47 TCGA-ER-A19F-06 7 30094910 30094910 C T PLEKHA8 Missense_Mutation p.P331S 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 7 31864478 31864478 G A PDE1C Intron 0.39 TCGA-ER-A19F-06 7 34724190 34724190 C T NPSR1 Silent p.V58V 0.27 TCGA-ER-A19F-06 7 35242073 35242073 T C TBX20 Missense_Mutation p.H438R 0.67 deleterious_low_confidence(0.02) benign(0.127) TCGA-ER-A19F-06 7 36552758 36552758 C T AOAH 3'UTR 0.33 TCGA-ER-A19F-06 7 43927114 43927114 T C URGCP Intron 0.39 TCGA-ER-A19F-06 7 44190561 44190561 G A GCK Silent p.I160I 0.45 TCGA-ER-A19F-06 7 44576027 44576027 C T NPC1L1 Missense_Mutation p.G561E 0.48 deleterious(0.01) benign(0.298) TCGA-ER-A19F-06 7 44579685 44579685 G A NPC1L1 Missense_Mutation p.S104L 0.38 deleterious(0.02) benign(0.017) TCGA-ER-A19F-06 7 47851482 47851482 G A PKD1L1 Missense_Mutation p.S2505F 0.36 tolerated(0.16) benign(0.063) TCGA-ER-A19F-06 7 47921678 47921678 C T PKD1L1 Missense_Mutation p.D1091N 0.36 tolerated(0.8) benign(0.004) TCGA-ER-A19F-06 7 55268067 55268067 C T EGFR Silent p.S969S 0.49 TCGA-ER-A19F-06 7 62758725 62758725 C T ZNF733P RNA 0.47 TCGA-ER-A19F-06 7 71130396 71130396 G A WBSCR17 Missense_Mutation p.V361I 0.45 deleterious(0.01) probably_damaging(0.935) TCGA-ER-A19F-06 7 73013866 73013866 C T MLXIPL Missense_Mutation p.S354N 0.25 tolerated(0.6) benign(0.002) TCGA-ER-A19F-06 7 75182832 75182832 G A HIP1 Silent p.L739L 0.50 TCGA-ER-A19F-06 7 75182833 75182833 G A HIP1 Silent p.S738S 0.48 TCGA-ER-A19F-06 7 780536 780536 C T HEATR2 Silent p.I287I 0.43 TCGA-ER-A19F-06 7 780537 780537 C T HEATR2 Missense_Mutation p.P288S 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 7 8095132 8095132 C T GLCCI1 Missense_Mutation p.R256C 0.37 deleterious(0.03) possibly_damaging(0.804) TCGA-ER-A19F-06 7 81600048 81600048 C T CACNA2D1 Missense_Mutation p.G716E 0.44 deleterious(0) probably_damaging(0.971) TCGA-ER-A19F-06 7 82435017 82435017 G A PCLO Missense_Mutation p.P4974S 0.43 unknown(0) TCGA-ER-A19F-06 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.54 unknown(0) TCGA-ER-A19F-06 7 82579434 82579434 C T PCLO Silent p.R3490R 0.39 TCGA-ER-A19F-06 7 86394850 86394850 G A GRM3 Missense_Mutation p.G130E 0.50 deleterious(0) probably_damaging(0.992) TCGA-ER-A19F-06 7 93055620 93055620 C T CALCR 3'UTR 0.42 TCGA-ER-A19F-06 7 99117481 99117481 C T ZKSCAN5 Silent p.P195P 0.37 TCGA-ER-A19F-06 7 99457461 99457461 G A CYP3A43 Missense_Mutation p.D292N 0.49 deleterious(0.01) benign(0.015) TCGA-ER-A19F-06 7 99499691 99499691 T G TRIM4 Intron 0.32 TCGA-ER-A19F-06 7 99662229 99662229 G A ZSCAN21 Missense_Mutation p.E471K 0.35 deleterious_low_confidence(0) benign(0.359) TCGA-ER-A19F-06 8 101178046 101178046 G T SPAG1 Missense_Mutation p.G49C 0.30 deleterious(0.03) possibly_damaging(0.857) TCGA-ER-A19F-06 8 10465954 10465954 G A RP1L1 Missense_Mutation p.P1885L 0.48 unknown(0) TCGA-ER-A19F-06 8 10466594 10466594 G A RP1L1 Missense_Mutation p.P1672S 0.36 unknown(0) TCGA-ER-A19F-06 8 10466595 10466595 G A RP1L1 Silent p.S1671S 0.37 TCGA-ER-A19F-06 8 105456623 105456623 C T DPYS Missense_Mutation p.G216S 0.50 deleterious(0) probably_damaging(0.945) TCGA-ER-A19F-06 8 106813976 106813976 A G ZFPM2 Missense_Mutation p.T556A 0.39 deleterious(0) probably_damaging(0.998) TCGA-ER-A19F-06 8 107773302 107773302 C T ABRA Missense_Mutation p.G370D 0.39 deleterious(0) probably_damaging(0.995) TCGA-ER-A19F-06 8 113275990 113275990 G T CSMD3 Missense_Mutation p.T3247K 0.56 tolerated(0.1) possibly_damaging(0.719) TCGA-ER-A19F-06 8 113697892 113697892 C T CSMD3 Missense_Mutation p.G742E 0.35 deleterious(0.04) probably_damaging(1) TCGA-ER-A19F-06 8 123965271 123965271 C T ZHX2 Silent p.A507A 0.38 TCGA-ER-A19F-06 8 125551344 125551344 C T TATDN1 5'Flank 0.42 TCGA-ER-A19F-06 8 125551345 125551345 C T TATDN1 5'Flank 0.45 TCGA-ER-A19F-06 8 12600738 12600738 G A LONRF1 Nonsense_Mutation p.Q259* 0.46 TCGA-ER-A19F-06 8 126448340 126448340 T A TRIB1 Missense_Mutation p.V249E 0.37 deleterious(0) probably_damaging(0.968) TCGA-ER-A19F-06 8 131916068 131916068 C T ADCY8 Missense_Mutation p.G621R 0.41 tolerated(0.48) possibly_damaging(0.469) TCGA-ER-A19F-06 8 133014007 133014007 T C EFR3A Missense_Mutation p.V720A 0.36 tolerated(0.77) benign(0.002) TCGA-ER-A19F-06 8 133153402 133153402 G A KCNQ3 Missense_Mutation p.A480V 0.41 tolerated(0.06) possibly_damaging(0.863) TCGA-ER-A19F-06 8 135614806 135614806 C T ZFAT Missense_Mutation p.E386K 0.51 deleterious(0.03) possibly_damaging(0.63) TCGA-ER-A19F-06 8 139729104 139729104 A G COL22A1 Silent p.I788I 0.30 TCGA-ER-A19F-06 8 146171581 146171581 G A ZNF16 Silent p.L4L 0.38 TCGA-ER-A19F-06 8 20022597 20022597 A T SLC18A1 Missense_Mutation p.F294I 0.46 tolerated(0.39) benign(0.141) TCGA-ER-A19F-06 8 20022598 20022598 G A SLC18A1 Silent p.L293L 0.45 TCGA-ER-A19F-06 8 22052092 22052092 C T BMP1 Nonsense_Mutation p.Q478* 0.40 TCGA-ER-A19F-06 8 22452193 22452193 C T PDLIM2 3'Flank 0.40 TCGA-ER-A19F-06 8 22548290 22548290 C T EGR3 Missense_Mutation p.S287N 0.38 deleterious(0) probably_damaging(0.943) TCGA-ER-A19F-06 8 22995438 22995438 G A TNFRSF10D Missense_Mutation p.S369F 0.54 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-ER-A19F-06 8 24254924 24254924 G A ADAMDEC1 Silent p.G194G 0.35 TCGA-ER-A19F-06 8 26623610 26623610 C T ADRA1A Intron 0.37 TCGA-ER-A19F-06 8 26721843 26721843 C T ADRA1A Missense_Mutation p.S215N 0.39 tolerated(0.05) benign(0.072) TCGA-ER-A19F-06 8 2800094 2800094 G A CSMD1 Missense_Mutation p.H3479Y 0.47 benign(0.169) TCGA-ER-A19F-06 8 29033619 29033619 G A KIF13B Missense_Mutation p.P304L 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A19F-06 8 29931525 29931525 G A TMEM66 Silent p.D50D 0.33 TCGA-ER-A19F-06 8 3046477 3046477 G A CSMD1 Missense_Mutation p.P1819S 0.48 probably_damaging(0.999) TCGA-ER-A19F-06 8 30623851 30623851 G A UBXN8 RNA 0.43 TCGA-ER-A19F-06 8 3165304 3165304 C T CSMD1 Missense_Mutation p.R1288Q 0.40 probably_damaging(0.976) TCGA-ER-A19F-06 8 33230301 33230301 C T FUT10 Missense_Mutation p.E412K 0.53 tolerated(1) benign(0.001) TCGA-ER-A19F-06 8 35402039 35402039 C T UNC5D Intron 0.36 TCGA-ER-A19F-06 8 37702229 37702229 G A BRF2 Nonsense_Mutation p.Q347* 0.47 TCGA-ER-A19F-06 8 39091502 39091502 C T ADAM32 Silent p.F573F 0.38 TCGA-ER-A19F-06 8 39785614 39785614 G A IDO1 Silent p.L374L 0.42 TCGA-ER-A19F-06 8 41530158 41530158 C T ANK1 Missense_Mutation p.G1645R 0.39 tolerated_low_confidence(0.05) probably_damaging(0.934) TCGA-ER-A19F-06 8 48815190 48815190 G A PRKDC Missense_Mutation p.P1070S 0.44 probably_damaging(1) TCGA-ER-A19F-06 8 55541024 55541024 A T RP1 Missense_Mutation p.I1528F 0.52 deleterious(0.01) possibly_damaging(0.534) TCGA-ER-A19F-06 8 55541533 55541533 G A RP1 Silent p.Q1697Q 0.36 TCGA-ER-A19F-06 8 55541975 55541975 G A RP1 Missense_Mutation p.E1845K 0.45 tolerated(0.15) possibly_damaging(0.835) TCGA-ER-A19F-06 8 57080812 57080812 G A PLAG1 Missense_Mutation p.P6L 0.14 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-ER-A19F-06 8 57080813 57080813 G A PLAG1 Missense_Mutation p.P6S 0.14 deleterious_low_confidence(0.04) probably_damaging(0.968) TCGA-ER-A19F-06 8 65493514 65493514 C T BHLHE22 Missense_Mutation p.S56F 0.32 deleterious_low_confidence(0.01) benign(0.078) TCGA-ER-A19F-06 8 6690262 6690262 G A GS1-24F4.2 5'Flank 0.40 TCGA-ER-A19F-06 8 67086746 67086746 C T TRIM55 Missense_Mutation p.A522V 0.29 tolerated_low_confidence(0.2) benign(0.086) TCGA-ER-A19F-06 8 68992720 68992720 G T PREX2 Missense_Mutation p.R562L 0.28 deleterious(0.02) benign(0.055) TCGA-ER-A19F-06 8 69009299 69009299 G A PREX2 Missense_Mutation p.E806K 0.30 tolerated_low_confidence(0.24) benign(0.02) TCGA-ER-A19F-06 8 6914065 6914065 G A DEFA5 Missense_Mutation p.S52F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19F-06 8 70981495 70981495 C A PRDM14 Missense_Mutation p.D201Y 0.52 deleterious(0) possibly_damaging(0.879) TCGA-ER-A19F-06 8 73479927 73479927 C T KCNB2 5'UTR 0.36 TCGA-ER-A19F-06 8 74464404 74464404 G A STAU2 Missense_Mutation p.S458L 0.37 tolerated(0.15) benign(0.005) TCGA-ER-A19F-06 8 88886023 88886023 G A DCAF4L2 Silent p.V59V 0.34 TCGA-ER-A19F-06 9 100961797 100961797 G A TBC1D2 Missense_Mutation p.H874Y 0.68 deleterious(0.04) possibly_damaging(0.868) TCGA-ER-A19F-06 9 113173450 113173450 C T SVEP1 Missense_Mutation p.E2181K 0.71 probably_damaging(0.999) TCGA-ER-A19F-06 9 125391741 125391741 G A OR1B1 Missense_Mutation p.S25F 0.75 deleterious(0.04) benign(0.133) TCGA-ER-A19F-06 9 127684102 127684102 G A GOLGA1 Missense_Mutation p.R211C 0.71 tolerated(0.07) benign(0.008) TCGA-ER-A19F-06 9 131105465 131105465 G A SLC27A4 Silent p.L18L 0.70 TCGA-ER-A19F-06 9 137803076 137803076 C T FCN1 Silent p.E212E 0.81 TCGA-ER-A19F-06 9 21304743 21304743 G A IFNA5 Silent p.I171I 0.75 TCGA-ER-A19F-06 9 32631150 32631150 C T TAF1L Silent p.A1476A 0.74 TCGA-ER-A19F-06 9 33468751 33468751 C T NOL6 Silent p.L382L 0.85 TCGA-ER-A19F-06 9 35093191 35093191 G T PIGO Missense_Mutation p.P319T 0.85 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A19F-06 9 37740553 37740553 G A FRMPD1 Silent p.E676E 0.71 TCGA-ER-A19F-06 9 70177917 70177917 C A FOXD4L5 Nonsense_Mutation p.E23* 0.48 TCGA-ER-A19F-06 9 74526545 74526545 C T C9orf85 5'UTR 0.90 TCGA-ER-A19F-06 9 79324840 79324840 T A PRUNE2 Missense_Mutation p.N784Y 0.53 deleterious(0) probably_damaging(0.935) TCGA-ER-A19F-06 9 8454580 8454580 C T PTPRD Intron 0.62 TCGA-ER-A19F-06 9 94488955 94488955 G A ROR2 Silent p.I418I 0.72 TCGA-ER-A19F-06 9 96860833 96860833 A G PTPDC1 Missense_Mutation p.E660G 0.74 deleterious(0.04) benign(0.278) TCGA-ER-A19F-06 9 99580959 99580959 G A ZNF782 Missense_Mutation p.P449L 0.70 deleterious(0.01) probably_damaging(1) TCGA-ER-A19F-06 X 100807961 100807961 C T ARMCX1 Silent p.I16I 0.82 TCGA-ER-A19F-06 X 101858025 101858025 T C ARMCX5 Missense_Mutation p.L319P 0.86 deleterious(0) probably_damaging(1) TCGA-ER-A19F-06 X 102335530 102335530 C T NXF3 Missense_Mutation p.E301K 0.89 tolerated(0.1) benign(0.235) TCGA-ER-A19F-06 X 107437780 107437780 C T COL4A6 Missense_Mutation p.G330E 0.78 unknown(0) TCGA-ER-A19F-06 X 107834829 107834829 G A COL4A5 Missense_Mutation p.G460R 0.89 unknown(0) TCGA-ER-A19F-06 X 107849982 107849982 G A COL4A5 Missense_Mutation p.G752E 0.85 unknown(0) TCGA-ER-A19F-06 X 111020231 111020231 C T TRPC5 Splice_Site p.X745_splice 0.83 TCGA-ER-A19F-06 X 112021840 112021840 G A AMOT Silent p.I1070I 0.84 TCGA-ER-A19F-06 X 117043976 117043976 G A KLHL13 Silent p.F221F 0.78 TCGA-ER-A19F-06 X 117053571 117053571 C T KLHL13 Missense_Mutation p.M164I 0.90 deleterious(0.03) possibly_damaging(0.511) TCGA-ER-A19F-06 X 118786967 118786967 G A SEPT6 Silent p.F126F 0.88 TCGA-ER-A19F-06 X 12906842 12906842 C T TLR7 3'UTR 0.81 TCGA-ER-A19F-06 X 12939813 12939813 C T TLR8 Missense_Mutation p.S885F 0.84 deleterious(0.02) probably_damaging(0.962) TCGA-ER-A19F-06 X 135431445 135431445 G A GPR112 Missense_Mutation p.M1860I 0.88 deleterious(0.03) benign(0.035) TCGA-ER-A19F-06 X 135469904 135469904 C T GPR112 Silent p.F2594F 0.58 TCGA-ER-A19F-06 X 140993243 140993243 C T MAGEC1 Missense_Mutation p.S18F 0.89 tolerated_low_confidence(0.07) possibly_damaging(0.485) TCGA-ER-A19F-06 X 141291569 141291569 C T MAGEC2 Missense_Mutation p.E69K 0.96 tolerated(0.24) benign(0.042) TCGA-ER-A19F-06 X 147743491 147743491 G A AFF2 Missense_Mutation p.M81I 0.85 deleterious(0) possibly_damaging(0.844) TCGA-ER-A19F-06 X 151818284 151818284 C T GABRQ Silent p.I230I 0.89 TCGA-ER-A19F-06 X 151900428 151900428 G A MAGEA12 Nonsense_Mutation p.R125* 0.80 TCGA-ER-A19F-06 X 153715943 153715943 G A SLC10A3 Missense_Mutation p.S446F 0.76 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19F-06 X 154134723 154134723 A G F8 Missense_Mutation p.I1782T 0.67 deleterious(0) probably_damaging(0.958) TCGA-ER-A19F-06 X 19392708 19392708 G A MAP3K15 Missense_Mutation p.S887F 0.75 tolerated(0.09) benign(0.114) TCGA-ER-A19F-06 X 26158027 26158027 G A MAGEB18 Missense_Mutation p.D309N 0.92 deleterious(0) probably_damaging(0.992) TCGA-ER-A19F-06 X 2873470 2873470 G A ARSE Silent p.Y98Y 0.64 TCGA-ER-A19F-06 X 32305680 32305680 C T DMD Missense_Mutation p.E2086K 0.82 possibly_damaging(0.486) TCGA-ER-A19F-06 X 3239245 3239245 G A MXRA5 Missense_Mutation p.S1494L 0.90 tolerated(0.18) benign(0) TCGA-ER-A19F-06 X 53642793 53642793 T G HUWE1 Missense_Mutation p.D654A 0.82 probably_damaging(0.999) TCGA-ER-A19F-06 X 63579383 63579383 G A MTMR8 Missense_Mutation p.R17C 0.72 tolerated(0.05) benign(0.007) TCGA-ER-A19F-06 X 64722081 64722081 C T ZC3H12B Silent p.P501P 0.78 TCGA-ER-A19F-06 X 89177248 89177248 G A TGIF2LX Missense_Mutation p.G55E 0.88 tolerated(0.07) benign(0.005) TCGA-ER-A19G-06 10 105363294 105363294 G A SH3PXD2A Missense_Mutation p.P533S 0.54 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 10 134628402 134628402 C A TTC40 Missense_Mutation p.K2378N 0.66 deleterious(0.03) possibly_damaging(0.714) TCGA-ER-A19G-06 10 24813339 24813339 C T KIAA1217 Silent p.V848V 0.80 TCGA-ER-A19G-06 10 25701267 25701267 C T GPR158 Silent p.P400P 0.72 TCGA-ER-A19G-06 10 25886856 25886856 G C GPR158 Silent p.R767R 0.71 TCGA-ER-A19G-06 10 28822453 28822453 C T WAC 5'UTR 0.55 TCGA-ER-A19G-06 10 28897258 28897258 C T WAC Missense_Mutation p.P355S 0.70 tolerated_low_confidence(0.12) probably_damaging(0.997) TCGA-ER-A19G-06 10 37451602 37451602 C T ANKRD30A Silent p.F586F 0.54 TCGA-ER-A19G-06 10 38305931 38305931 C T ZNF33A Missense_Mutation p.L48F 0.63 deleterious(0) possibly_damaging(0.887) TCGA-ER-A19G-06 10 43659461 43659461 C T CSGALNACT2 Silent p.F376F 0.75 TCGA-ER-A19G-06 10 48429087 48429087 C T GDF10 Missense_Mutation p.D267N 0.75 tolerated(0.14) probably_damaging(0.998) TCGA-ER-A19G-06 10 55591165 55591165 C T PCDH15 Missense_Mutation p.G1371E 0.67 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 10 70940196 70940196 C T SUPV3L1 Missense_Mutation p.S50F 0.79 deleterious(0.02) possibly_damaging(0.736) TCGA-ER-A19G-06 10 88768349 88768349 A T RP11-96C23.10 3'Flank 0.67 TCGA-ER-A19G-06 10 88768350 88768350 C T RP11-96C23.10 3'Flank 0.67 TCGA-ER-A19G-06 10 88769290 88769290 G A RP11-96C23.10 3'Flank 0.75 TCGA-ER-A19G-06 10 96745846 96745846 C T CYP2C9 Silent p.P402P 0.59 TCGA-ER-A19G-06 11 100170080 100170080 G A CNTN5 Missense_Mutation p.G858R 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 11 101833006 101833006 A G KIAA1377 Missense_Mutation p.T414A 0.42 tolerated(0.44) benign(0.027) TCGA-ER-A19G-06 11 105623843 105623843 C T GRIA4 Silent p.S128S 0.55 TCGA-ER-A19G-06 11 1085744 1085744 G A MUC2 Missense_Mutation p.D889N 0.43 probably_damaging(1) TCGA-ER-A19G-06 11 1090912 1090912 C T MUC2 Silent p.T1269T 0.50 TCGA-ER-A19G-06 11 113295249 113295249 G A DRD2 Missense_Mutation p.T42I 0.34 tolerated(0.36) benign(0.094) TCGA-ER-A19G-06 11 116633303 116633303 G A BUD13 Silent p.S334S 0.23 TCGA-ER-A19G-06 11 119063891 119063891 C T CCDC153 Missense_Mutation p.E107K 0.45 tolerated(0.39) benign(0.377) TCGA-ER-A19G-06 11 121393401 121393401 T C SORL1 Missense_Mutation p.I504T 0.18 deleterious(0) benign(0.069) TCGA-ER-A19G-06 11 122774974 122774974 T G C11orf63 Missense_Mutation p.V229G 0.21 tolerated(0.06) benign(0.001) TCGA-ER-A19G-06 11 12315214 12315214 C T MICALCL Missense_Mutation p.P79L 0.20 deleterious(0.01) possibly_damaging(0.894) TCGA-ER-A19G-06 11 123624405 123624405 C T OR6X1 Silent p.V274V 0.47 TCGA-ER-A19G-06 11 123901194 123901194 C T OR10G8 Silent p.L289L 0.22 TCGA-ER-A19G-06 11 124756364 124756364 G T ROBO4 Missense_Mutation p.F930L 0.36 tolerated(0.08) benign(0.153) TCGA-ER-A19G-06 11 125503111 125503111 C T CHEK1 Missense_Mutation p.R160C 0.25 deleterious(0) probably_damaging(0.92) TCGA-ER-A19G-06 11 126162942 126162942 T C TIRAP Missense_Mutation p.V213A 0.65 deleterious(0) possibly_damaging(0.887) TCGA-ER-A19G-06 11 1265002 1265002 C T MUC5B Missense_Mutation p.P2298S 0.21 unknown(0) TCGA-ER-A19G-06 11 1265003 1265003 C T MUC5B Missense_Mutation p.P2298L 0.21 unknown(0) TCGA-ER-A19G-06 11 134009758 134009758 G A JAM3 Missense_Mutation p.G30E 0.32 tolerated(0.45) benign(0.003) TCGA-ER-A19G-06 11 16119235 16119235 C T SOX6 Splice_Site p.X300_splice 0.40 TCGA-ER-A19G-06 11 26586936 26586936 G A MUC15 Missense_Mutation p.T184I 0.28 deleterious_low_confidence(0.03) probably_damaging(0.934) TCGA-ER-A19G-06 11 27390105 27390105 G C LGR4 Missense_Mutation p.A722G 0.47 deleterious(0.04) possibly_damaging(0.854) TCGA-ER-A19G-06 11 28112954 28112954 A T KIF18A Splice_Site p.X196_splice 0.18 TCGA-ER-A19G-06 11 30032279 30032279 C T KCNA4 Silent p.V649V 0.16 TCGA-ER-A19G-06 11 40136159 40136159 G T LRRC4C Missense_Mutation p.P562T 0.36 tolerated_low_confidence(0.09) benign(0.067) TCGA-ER-A19G-06 11 4510907 4510907 C T OR52K1 Silent p.I259I 0.40 TCGA-ER-A19G-06 11 46726247 46726247 C T ZNF408 Missense_Mutation p.P333S 0.54 tolerated(0.32) benign(0.008) TCGA-ER-A19G-06 11 47827791 47827791 G A NUP160 Silent p.F840F 0.46 TCGA-ER-A19G-06 11 49196493 49196493 C T FOLH1 Silent p.V352V 0.17 TCGA-ER-A19G-06 11 4967515 4967515 G A OR51A4 Silent p.L272L 0.17 TCGA-ER-A19G-06 11 5275617 5275617 C T HBG2 Missense_Mutation p.D74N 0.30 tolerated(0.32) benign(0.002) TCGA-ER-A19G-06 11 5444330 5444330 G A OR51Q1 Silent p.Q300Q 0.40 TCGA-ER-A19G-06 11 5510551 5510551 G A OR52D1 Silent p.V205V 0.40 TCGA-ER-A19G-06 11 55541419 55541419 C T OR5D13 Missense_Mutation p.S169L 0.32 deleterious(0.01) possibly_damaging(0.783) TCGA-ER-A19G-06 11 55541445 55541445 A - OR5D13 Frame_Shift_Del p.N178Ifs*8 0.24 TCGA-ER-A19G-06 11 55681218 55681218 C A OR5W2 Missense_Mutation p.V281L 0.28 deleterious(0.02) possibly_damaging(0.517) TCGA-ER-A19G-06 11 56185123 56185123 C T OR5R1 Missense_Mutation p.E196K 0.51 tolerated(0.06) benign(0.345) TCGA-ER-A19G-06 11 57147108 57147108 G A PRG3 Silent p.A78A 0.23 TCGA-ER-A19G-06 11 57995786 57995786 G A OR10Q1 Missense_Mutation p.P188S 0.56 deleterious(0.01) probably_damaging(0.938) TCGA-ER-A19G-06 11 62747339 62747339 G A SLC22A6 Silent p.I373I 0.28 TCGA-ER-A19G-06 11 64677197 64677197 G A ATG2A Missense_Mutation p.P688L 0.16 deleterious(0.02) benign(0.279) TCGA-ER-A19G-06 11 64855563 64855563 C T ZFPL1 Missense_Mutation p.H304Y 0.23 deleterious(0) probably_damaging(0.938) TCGA-ER-A19G-06 11 6520067 6520067 G A DNHD1 Missense_Mutation p.E208K 0.18 possibly_damaging(0.467) TCGA-ER-A19G-06 11 66039192 66039192 C T RAB1B Intron 0.43 TCGA-ER-A19G-06 11 68478403 68478403 C T MTL5 Missense_Mutation p.E425K 0.49 tolerated(0.05) possibly_damaging(0.606) TCGA-ER-A19G-06 11 7064042 7064042 A T NLRP14 Missense_Mutation p.D262V 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 11 71293629 71293629 G A KRTAP5-11 Silent p.S85S 0.19 TCGA-ER-A19G-06 12 10571009 10571009 C T KLRC3 Silent p.E140E 0.20 TCGA-ER-A19G-06 12 107080830 107080830 C T RFX4 Silent p.P191P 0.45 TCGA-ER-A19G-06 12 108686389 108686389 G A CMKLR1 Silent p.F117F 0.14 TCGA-ER-A19G-06 12 113400697 113400697 C T OAS3 Nonsense_Mutation p.R692* 0.22 TCGA-ER-A19G-06 12 117665423 117665423 C T NOS1 Nonsense_Mutation p.W1177* 0.49 TCGA-ER-A19G-06 12 122209433 122209433 C T TMEM120B Silent p.F219F 0.50 TCGA-ER-A19G-06 12 122295687 122295687 G A HPD Silent p.T23T 0.39 TCGA-ER-A19G-06 12 122295688 122295688 G A HPD Missense_Mutation p.T23I 0.39 tolerated(0.06) possibly_damaging(0.768) TCGA-ER-A19G-06 12 123187700 123187700 C T HCAR2 Missense_Mutation p.G44D 0.48 deleterious(0) probably_damaging(0.989) TCGA-ER-A19G-06 12 125626809 125626809 C T AACS 3'UTR 0.50 TCGA-ER-A19G-06 12 125834043 125834043 C T TMEM132B Missense_Mutation p.S33L 0.27 tolerated(0.3) benign(0.382) TCGA-ER-A19G-06 12 13140007 13140007 A G HEBP1 Intron 0.22 TCGA-ER-A19G-06 12 14578322 14578322 C T ATF7IP Silent p.A491A 0.23 TCGA-ER-A19G-06 12 21918681 21918681 T G KCNJ8 Silent p.G417G 0.42 TCGA-ER-A19G-06 12 21918682 21918682 C T KCNJ8 Missense_Mutation p.G417E 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-ER-A19G-06 12 26383984 26383984 C T SSPN Missense_Mutation p.S236F 0.26 deleterious(0.01) possibly_damaging(0.459) TCGA-ER-A19G-06 12 41967660 41967660 C T PDZRN4 Missense_Mutation p.H1027Y 0.12 tolerated(1) possibly_damaging(0.742) TCGA-ER-A19G-06 12 44781983 44781983 C T TMEM117 Missense_Mutation p.S358F 0.52 deleterious(0) possibly_damaging(0.667) TCGA-ER-A19G-06 12 47170762 47170762 C T SLC38A4 Missense_Mutation p.V367M 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 12 4848473 4848473 G A GALNT8 Silent p.L218L 0.20 TCGA-ER-A19G-06 12 49221697 49221697 C T CACNB3 3'UTR 0.50 TCGA-ER-A19G-06 12 49724243 49724243 C G TROAP Missense_Mutation p.Q539E 0.55 tolerated_low_confidence(0.19) benign(0.388) TCGA-ER-A19G-06 12 50615941 50615941 G A LIMA1 Silent p.L165L 0.20 TCGA-ER-A19G-06 12 52380764 52380764 C T ACVR1B Intron 0.67 TCGA-ER-A19G-06 12 52913965 52913965 C G KRT5 Missense_Mutation p.G39A 0.10 tolerated(0.98) possibly_damaging(0.794) TCGA-ER-A19G-06 12 52963665 52963665 T C KRT74 Missense_Mutation p.E371G 0.41 deleterious(0) probably_damaging(0.955) TCGA-ER-A19G-06 12 53189302 53189302 G A KRT3 Silent p.I175I 0.68 TCGA-ER-A19G-06 12 57843234 57843234 C T INHBC Missense_Mutation p.T163I 0.47 deleterious(0.03) benign(0.303) TCGA-ER-A19G-06 12 6427490 6427490 G A PLEKHG6 Silent p.L393L 0.41 TCGA-ER-A19G-06 12 71898435 71898435 C T LGR5 Missense_Mutation p.P85L 0.24 tolerated(0.68) benign(0.002) TCGA-ER-A19G-06 12 7510023 7510023 G A CD163L1 Missense_Mutation p.P1447S 0.25 tolerated(0.38) benign(0.201) TCGA-ER-A19G-06 12 75874745 75874745 G A GLIPR1 Missense_Mutation p.E29K 0.27 tolerated(0.34) benign(0.001) TCGA-ER-A19G-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.49 TCGA-ER-A19G-06 12 78513028 78513028 G C NAV3 Missense_Mutation p.D1018H 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 12 8048183 8048183 G A NANOGP1 RNA 0.25 TCGA-ER-A19G-06 12 88381713 88381713 G A C12orf50 Missense_Mutation p.S244F 0.38 tolerated(0.18) possibly_damaging(0.812) TCGA-ER-A19G-06 12 93793087 93793087 C A NUDT4 Missense_Mutation p.L160I 0.11 tolerated(0.67) benign(0.002) TCGA-ER-A19G-06 12 99223026 99223026 C T ANKS1B Missense_Mutation p.D998N 0.39 deleterious(0.01) possibly_damaging(0.707) TCGA-ER-A19G-06 13 109817396 109817396 C T MYO16 Missense_Mutation p.S1749F 0.57 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-ER-A19G-06 13 111088659 111088659 C T COL4A2 Missense_Mutation p.T257I 0.54 benign(0.035) TCGA-ER-A19G-06 13 23928011 23928011 G A SACS Missense_Mutation p.L700F 0.43 probably_damaging(0.997) TCGA-ER-A19G-06 13 25457366 25457366 C T CENPJ Silent p.R1322R 0.49 TCGA-ER-A19G-06 13 43652761 43652761 A G DNAJC15 Missense_Mutation p.Y83C 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-ER-A19G-06 13 78187050 78187050 C T SCEL Silent p.I454I 0.37 TCGA-ER-A19G-06 13 80911390 80911390 G A SPRY2 Missense_Mutation p.R151W 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-ER-A19G-06 13 88330160 88330161 - C SLITRK5 Frame_Shift_Ins p.R841Pfs*33 0.45 TCGA-ER-A19G-06 13 96230203 96230203 C T CLDN10 Missense_Mutation p.H208Y 0.40 tolerated(0.2) benign(0.004) TCGA-ER-A19G-06 14 101498395 101498395 C T MIR543 RNA 0.35 TCGA-ER-A19G-06 14 105684023 105684023 G C BRF1 Missense_Mutation p.R544G 0.56 deleterious(0) possibly_damaging(0.899) TCGA-ER-A19G-06 14 106237485 106237485 G A IGHG3 Missense_Mutation p.H87Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 14 19988266 19988266 C A POTEM 3'UTR 0.19 TCGA-ER-A19G-06 14 20215876 20215876 G A OR4Q3 Missense_Mutation p.G97E 0.12 deleterious(0.03) probably_damaging(0.957) TCGA-ER-A19G-06 14 20248826 20248826 C T OR4M1 Silent p.L115L 0.13 TCGA-ER-A19G-06 14 20345228 20345228 G A OR4K2 Missense_Mutation p.D268N 0.17 tolerated(0.09) possibly_damaging(0.898) TCGA-ER-A19G-06 14 20404103 20404103 C T OR4K1 Missense_Mutation p.S93F 0.14 deleterious(0) possibly_damaging(0.61) TCGA-ER-A19G-06 14 20612380 20612380 T C OR4N5 Silent p.L162L 0.29 TCGA-ER-A19G-06 14 21109567 21109567 G A OR6S1 Missense_Mutation p.S95F 0.37 deleterious(0) probably_damaging(0.997) TCGA-ER-A19G-06 14 22102909 22102909 G A OR10G2 Silent p.L30L 0.40 TCGA-ER-A19G-06 14 22433750 22433750 G A TRAV12-3 Silent p.L5L 0.33 TCGA-ER-A19G-06 14 23523812 23523812 G A CDH24 Silent p.A229A 0.22 TCGA-ER-A19G-06 14 24877292 24877292 G A NYNRIN Missense_Mutation p.G139E 0.40 tolerated_low_confidence(0.26) possibly_damaging(0.511) TCGA-ER-A19G-06 14 24877293 24877293 G A NYNRIN Silent p.G139G 0.36 TCGA-ER-A19G-06 14 31598181 31598181 G A HECTD1 Missense_Mutation p.P1466S 0.31 tolerated(0.28) benign(0.001) TCGA-ER-A19G-06 14 34266709 34266709 C G NPAS3 Missense_Mutation p.H450D 0.23 tolerated(0.09) benign(0.045) TCGA-ER-A19G-06 14 58048095 58048095 C T SLC35F4 Missense_Mutation p.R251K 0.38 tolerated(0.4) benign(0.429) TCGA-ER-A19G-06 14 68221874 68221874 T C ZFYVE26 Missense_Mutation p.K2294E 0.25 tolerated(0.06) benign(0.232) TCGA-ER-A19G-06 14 75302090 75302090 C T YLPM1 Silent p.A2139A 0.28 TCGA-ER-A19G-06 14 79432697 79432697 C T NRXN3 Missense_Mutation p.L536F 0.36 tolerated(0.07) probably_damaging(0.981) TCGA-ER-A19G-06 14 80669401 80669401 G A DIO2 Silent p.S187S 0.29 TCGA-ER-A19G-06 14 81251619 81251619 G A CEP128 Missense_Mutation p.H611Y 0.31 tolerated(0.11) benign(0.153) TCGA-ER-A19G-06 14 81609513 81609513 A - TSHR Frame_Shift_Del p.N372Tfs*40 0.23 TCGA-ER-A19G-06 14 88945372 88945372 G A PTPN21 Silent p.L801L 0.36 TCGA-ER-A19G-06 14 94700961 94700961 G A PPP4R4 Missense_Mutation p.R229Q 0.34 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 14 95033518 95033518 G A SERPINA4 Silent p.R287R 0.46 TCGA-ER-A19G-06 15 101593484 101593484 C T LRRK1 Missense_Mutation p.R1305W 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 15 24922388 24922388 C T NPAP1 Silent p.I458I 0.35 TCGA-ER-A19G-06 15 33842517 33842517 G A RYR3 Silent p.K324K 0.35 TCGA-ER-A19G-06 15 33858941 33858941 G A RYR3 Silent p.E403E 0.43 TCGA-ER-A19G-06 15 35202393 35202393 G A AQR Missense_Mutation p.R536C 0.28 deleterious(0.03) possibly_damaging(0.743) TCGA-ER-A19G-06 15 45003812 45003812 G A B2M Splice_Site p.X23_splice 0.38 TCGA-ER-A19G-06 15 45777326 45777326 G A SLC30A4 3'UTR 0.27 TCGA-ER-A19G-06 15 50535050 50535050 G A HDC Missense_Mutation p.L466F 0.39 tolerated(0.66) benign(0.033) TCGA-ER-A19G-06 15 50535348 50535348 G A HDC Missense_Mutation p.R412C 0.50 tolerated(0.07) probably_damaging(0.932) TCGA-ER-A19G-06 15 51981460 51981460 G A SCG3 Silent p.E195E 0.45 TCGA-ER-A19G-06 15 52970292 52970292 C T FAM214A 5'UTR 0.64 TCGA-ER-A19G-06 15 54586225 54586225 G A UNC13C Silent p.R1317R 0.37 TCGA-ER-A19G-06 15 58902632 58902632 G A ADAM10 Missense_Mutation p.S630F 0.33 deleterious(0) probably_damaging(0.94) TCGA-ER-A19G-06 15 64970588 64970588 C T ZNF609 Missense_Mutation p.P1226S 0.27 tolerated(0.64) benign(0.159) TCGA-ER-A19G-06 15 65962215 65962215 G A DENND4A Silent p.S1562S 0.57 TCGA-ER-A19G-06 15 65962216 65962216 G A DENND4A Missense_Mutation p.S1562F 0.57 tolerated(0.24) benign(0.181) TCGA-ER-A19G-06 15 71125175 71125175 C T LARP6 Missense_Mutation p.R231Q 0.33 deleterious(0) probably_damaging(0.967) TCGA-ER-A19G-06 15 72037448 72037448 C T THSD4 Missense_Mutation p.S637L 0.43 tolerated(0.58) benign(0.003) TCGA-ER-A19G-06 15 73622119 73622119 C T HCN4 Missense_Mutation p.G462E 0.33 deleterious(0.02) unknown(0) TCGA-ER-A19G-06 15 74476282 74476282 G A STRA6 Silent p.P444P 0.55 TCGA-ER-A19G-06 15 74476283 74476283 G A STRA6 Missense_Mutation p.P444L 0.56 tolerated(0.6) benign(0.014) TCGA-ER-A19G-06 15 74836479 74836479 C T ARID3B Missense_Mutation p.P68S 0.50 deleterious(0.03) benign(0.132) TCGA-ER-A19G-06 15 83561583 83561583 T C HOMER2 Missense_Mutation p.I6V 0.48 deleterious(0.01) benign(0.003) TCGA-ER-A19G-06 15 84245343 84245343 G A SH3GL3 Silent p.L158L 0.39 TCGA-ER-A19G-06 15 85165263 85165263 C T ZSCAN2 Missense_Mutation p.L613F 0.50 tolerated(0.06) benign(0.08) TCGA-ER-A19G-06 15 85326156 85326156 G A ZNF592 Missense_Mutation p.D84N 0.27 tolerated(0.41) possibly_damaging(0.615) TCGA-ER-A19G-06 15 88476251 88476251 C T NTRK3 Silent p.K627K 0.47 TCGA-ER-A19G-06 15 89398549 89398549 C T ACAN Silent p.G911G 0.64 TCGA-ER-A19G-06 15 90021107 90021107 G A RHCG Silent p.V312V 0.48 TCGA-ER-A19G-06 15 91432627 91432627 C G FES Missense_Mutation p.R254G 0.44 tolerated(0.35) benign(0.013) TCGA-ER-A19G-06 16 19474639 19474639 C T TMC5 Missense_Mutation p.R396C 0.54 tolerated(0.08) benign(0.006) TCGA-ER-A19G-06 16 19485494 19485494 C T TMC5 Silent p.F662F 0.16 TCGA-ER-A19G-06 16 25251757 25251757 G A ZKSCAN2 Missense_Mutation p.R762C 0.26 deleterious(0.05) possibly_damaging(0.874) TCGA-ER-A19G-06 16 28944319 28944319 C T CD19 Missense_Mutation p.S148F 0.38 deleterious(0.01) probably_damaging(0.919) TCGA-ER-A19G-06 16 30129013 30129013 C T MAPK3 Silent p.L251L 0.21 TCGA-ER-A19G-06 16 30522415 30522415 C T ITGAL Missense_Mutation p.T915I 0.46 tolerated(0.14) benign(0.021) TCGA-ER-A19G-06 16 3169264 3169264 C T ZNF205 Silent p.V201V 0.25 TCGA-ER-A19G-06 16 3254454 3254454 G A OR1F1 Missense_Mutation p.D70N 0.43 deleterious(0) probably_damaging(0.963) TCGA-ER-A19G-06 16 3545419 3545419 C T C16orf90 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) benign(0.216) TCGA-ER-A19G-06 16 4867659 4867659 G A GLYR1 Silent p.I282I 0.26 TCGA-ER-A19G-06 16 57707263 57707263 A C GPR97 Missense_Mutation p.N30T 0.17 deleterious(0.01) benign(0.147) TCGA-ER-A19G-06 16 67516960 67516960 C T AGRP Missense_Mutation p.D62N 0.41 tolerated(0.24) benign(0.161) TCGA-ER-A19G-06 16 69965107 69965107 C T WWP2 Missense_Mutation p.H500Y 0.29 tolerated(0.52) possibly_damaging(0.67) TCGA-ER-A19G-06 16 700548 700548 G A WDR90 Missense_Mutation p.G133D 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-ER-A19G-06 16 70917885 70917885 C T HYDIN Missense_Mutation p.R3306Q 0.16 possibly_damaging(0.776) TCGA-ER-A19G-06 16 71570949 71570949 C T CHST4 Silent p.L123L 0.14 TCGA-ER-A19G-06 16 71674823 71674823 G A MARVELD3 Missense_Mutation p.V376M 0.48 deleterious(0.02) probably_damaging(1) TCGA-ER-A19G-06 16 72164148 72164148 C T PMFBP1 Missense_Mutation p.M582I 0.23 tolerated(0.64) benign(0.002) TCGA-ER-A19G-06 16 72821201 72821201 G A ZFHX3 Silent p.D3658D 0.48 TCGA-ER-A19G-06 16 74524922 74524922 G A GLG1 Missense_Mutation p.L476F 0.19 deleterious(0.01) benign(0.041) TCGA-ER-A19G-06 16 77369756 77369756 G A ADAMTS18 Missense_Mutation p.R586W 0.22 deleterious(0) possibly_damaging(0.881) TCGA-ER-A19G-06 16 81319193 81319193 G A BCMO1 Missense_Mutation p.R419Q 0.24 tolerated(0.06) possibly_damaging(0.507) TCGA-ER-A19G-06 16 85688528 85688528 C T GSE1 Missense_Mutation p.P243L 0.29 deleterious(0) unknown(0) TCGA-ER-A19G-06 16 89813022 89813022 C T FANCA Silent p.T1161T 0.16 TCGA-ER-A19G-06 16 984257 984257 G A LMF1 Intron 0.50 TCGA-ER-A19G-06 17 10206725 10206725 C T MYH13 Missense_Mutation p.E1853K 0.53 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A19G-06 17 10304037 10304037 C T MYH8 Silent p.A1135A 0.63 TCGA-ER-A19G-06 17 10361017 10361017 C T MYH4 Silent p.E539E 0.23 TCGA-ER-A19G-06 17 10429146 10429146 G A MYH2 Missense_Mutation p.A1412V 0.44 tolerated(0.12) benign(0.108) TCGA-ER-A19G-06 17 11520784 11520784 G A DNAH9 Missense_Mutation p.E321K 0.22 benign(0.37) TCGA-ER-A19G-06 17 17049351 17049351 C T MPRIP Missense_Mutation p.P384L 0.30 deleterious(0.01) possibly_damaging(0.615) TCGA-ER-A19G-06 17 17049352 17049352 C T MPRIP Silent p.P384P 0.30 TCGA-ER-A19G-06 17 18023226 18023226 C T MYO15A Missense_Mutation p.P371L 0.25 possibly_damaging(0.713) TCGA-ER-A19G-06 17 26901211 26901211 C T ALDOC Missense_Mutation p.E225K 0.51 deleterious(0) probably_damaging(0.939) TCGA-ER-A19G-06 17 30648009 30648009 C T RHBDL3 Missense_Mutation p.R326C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 17 3856722 3856722 C T ATP2A3 Silent p.G46G 0.23 TCGA-ER-A19G-06 17 3856723 3856723 C T ATP2A3 Missense_Mutation p.G46E 0.19 deleterious(0.04) possibly_damaging(0.812) TCGA-ER-A19G-06 17 38859788 38859788 C T KRT24 Missense_Mutation p.S53N 0.42 tolerated(0.36) unknown(0) TCGA-ER-A19G-06 17 38923894 38923894 G A KRT26 Missense_Mutation p.S400F 0.41 tolerated(0.14) possibly_damaging(0.739) TCGA-ER-A19G-06 17 40485919 40485919 A T STAT3 Missense_Mutation p.L316I 0.64 deleterious(0.03) probably_damaging(0.954) TCGA-ER-A19G-06 17 41244539 41244540 AA - BRCA1 Frame_Shift_Del p.F1003* 0.12 TCGA-ER-A19G-06 17 42745072 42745072 G A C17orf104 Missense_Mutation p.G598E 0.62 tolerated(0.07) probably_damaging(1) TCGA-ER-A19G-06 17 4994885 4994885 C T ZFP3 Missense_Mutation p.P29L 0.56 tolerated(0.66) benign(0.022) TCGA-ER-A19G-06 17 53014064 53014064 C T TOM1L1 Silent p.A303A 0.12 TCGA-ER-A19G-06 17 54428180 54428181 - A ANKFN1 Frame_Shift_Ins p.H87Tfs*2 0.36 TCGA-ER-A19G-06 17 56403732 56403732 C T BZRAP1 Silent p.R164R 0.51 TCGA-ER-A19G-06 17 60742014 60742014 A C MRC2 Missense_Mutation p.Q75P 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-ER-A19G-06 17 60767588 60767588 C T MRC2 Missense_Mutation p.P1272S 0.39 tolerated(0.06) benign(0.04) TCGA-ER-A19G-06 17 61568744 61568744 T C ACE Splice_Site p.X971_splice 0.57 TCGA-ER-A19G-06 17 66339772 66339772 C T ARSG Silent p.S82S 0.22 TCGA-ER-A19G-06 17 67129904 67129904 A G ABCA6 Silent p.F223F 0.24 TCGA-ER-A19G-06 17 72741553 72741553 C T RAB37 3'UTR 0.65 TCGA-ER-A19G-06 17 73945838 73945838 G A ACOX1 Missense_Mutation p.P480L 0.26 tolerated(0.71) benign(0.002) TCGA-ER-A19G-06 17 7662210 7662210 T G DNAH2 Missense_Mutation p.M739R 0.17 benign(0.017) TCGA-ER-A19G-06 17 79077486 79077486 C T BAIAP2 Missense_Mutation p.P276L 0.55 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A19G-06 17 8393840 8393840 G A MYH10 Silent p.L1568L 0.43 TCGA-ER-A19G-06 17 8770895 8770895 C T PIK3R6 5'UTR 0.40 TCGA-ER-A19G-06 17 9590171 9590171 A G USP43 Missense_Mutation p.Q433R 0.10 deleterious(0.05) benign(0.33) TCGA-ER-A19G-06 17 9783724 9783724 C T GLP2R Missense_Mutation p.P392L 0.46 deleterious(0.01) possibly_damaging(0.521) TCGA-ER-A19G-06 18 14851920 14851920 G A ANKRD30B Missense_Mutation p.G1207E 0.43 tolerated(0.2) probably_damaging(0.998) TCGA-ER-A19G-06 18 28934829 28934829 G A DSG1 Silent p.S890S 0.71 TCGA-ER-A19G-06 18 29040811 29040811 C T DSG3 Missense_Mutation p.R234C 0.72 tolerated(0.12) probably_damaging(0.912) TCGA-ER-A19G-06 18 3567488 3567488 C T DLGAP1 Missense_Mutation p.C686Y 0.75 tolerated(0.19) possibly_damaging(0.609) TCGA-ER-A19G-06 18 580847 580847 G A CETN1 Missense_Mutation p.D147N 0.60 deleterious(0.05) benign(0.107) TCGA-ER-A19G-06 18 61322896 61322896 G A SERPINB3 Missense_Mutation p.P390S 0.61 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 19 13340940 13340940 C T CACNA1A Silent p.L1828L 0.46 TCGA-ER-A19G-06 19 13428134 13428134 A G CACNA1A Silent p.G449G 0.21 TCGA-ER-A19G-06 19 13928122 13928122 C T ZSWIM4 Silent p.L425L 0.41 TCGA-ER-A19G-06 19 1398961 1398961 C T GAMT Missense_Mutation p.G175E 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19G-06 19 15350808 15350808 C G BRD4 Silent p.P1065P 0.17 TCGA-ER-A19G-06 19 15350809 15350809 G C BRD4 Missense_Mutation p.P1065R 0.18 possibly_damaging(0.884) TCGA-ER-A19G-06 19 16640618 16640618 A G CHERP Missense_Mutation p.F324L 0.33 deleterious(0) benign(0.438) TCGA-ER-A19G-06 19 17351502 17351502 G A NR2F6 Silent p.F117F 0.22 TCGA-ER-A19G-06 19 17973527 17973527 A G RPL18A Intron 0.17 TCGA-ER-A19G-06 19 18177379 18177379 G A IL12RB1 Nonsense_Mutation p.R486* 0.35 TCGA-ER-A19G-06 19 18177380 18177380 G A IL12RB1 Silent p.C485C 0.35 TCGA-ER-A19G-06 19 22156113 22156113 G A ZNF208 Missense_Mutation p.H575Y 0.32 deleterious(0.03) possibly_damaging(0.472) TCGA-ER-A19G-06 19 36218823 36218823 C T KMT2B Silent p.H1478H 0.29 TCGA-ER-A19G-06 19 36256056 36256056 G A C19orf55 Missense_Mutation p.G250S 0.40 tolerated(0.19) benign(0.401) TCGA-ER-A19G-06 19 37441305 37441305 C T ZNF568 Missense_Mutation p.P417L 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 19 38189123 38189123 T C ZNF607 Missense_Mutation p.S637G 0.14 deleterious(0.01) benign(0.003) TCGA-ER-A19G-06 19 38230580 38230580 C T ZNF573 Missense_Mutation p.E271K 0.37 tolerated(0.08) benign(0.01) TCGA-ER-A19G-06 19 38702652 38702652 G A DPF1 3'UTR 0.40 TCGA-ER-A19G-06 19 40408029 40408029 C T FCGBP Silent p.E1564E 0.23 TCGA-ER-A19G-06 19 41925134 41925134 C T BCKDHA Silent p.V193V 0.39 TCGA-ER-A19G-06 19 42381431 42381431 C T CD79A Silent p.F19F 0.45 TCGA-ER-A19G-06 19 42485885 42485885 G A ATP1A3 Missense_Mutation p.P444S 0.21 tolerated(0.1) benign(0.002) TCGA-ER-A19G-06 19 42603707 42603707 G A POU2F2 Missense_Mutation p.S158F 0.26 deleterious(0.03) possibly_damaging(0.646) TCGA-ER-A19G-06 19 4317268 4317268 G A FSD1 Missense_Mutation p.E264K 0.44 tolerated(0.47) benign(0.041) TCGA-ER-A19G-06 19 4318404 4318404 C T FSD1 Silent p.S287S 0.32 TCGA-ER-A19G-06 19 43237165 43237165 C T PSG3 Silent p.E160E 0.33 TCGA-ER-A19G-06 19 43697480 43697480 C T PSG4 3'UTR 0.25 TCGA-ER-A19G-06 19 45028047 45028047 C T CEACAM20 RNA 0.42 TCGA-ER-A19G-06 19 4510976 4510976 C T PLIN4 Missense_Mutation p.S985N 0.20 tolerated(0.08) benign(0.25) TCGA-ER-A19G-06 19 45322970 45322970 G A BCAM Missense_Mutation p.E584K 0.32 tolerated(0.13) possibly_damaging(0.802) TCGA-ER-A19G-06 19 45476417 45476417 G T CLPTM1 Nonsense_Mutation p.G87* 0.43 TCGA-ER-A19G-06 19 4652031 4652031 G A TNFAIP8L1 Silent p.T50T 0.20 TCGA-ER-A19G-06 19 51645918 51645918 C T SIGLEC7 Missense_Mutation p.L98F 0.26 deleterious(0.05) benign(0.149) TCGA-ER-A19G-06 19 51986533 51986533 G A CEACAM18 Silent p.R373R 0.30 TCGA-ER-A19G-06 19 52714670 52714670 C T PPP2R1A Missense_Mutation p.S143F 0.32 deleterious(0) probably_damaging(0.943) TCGA-ER-A19G-06 19 52772824 52772824 G C ZNF766 5'UTR 0.22 TCGA-ER-A19G-06 19 53007995 53007995 G A ZNF578 Missense_Mutation p.E51K 0.45 deleterious(0.01) benign(0.306) TCGA-ER-A19G-06 19 54782706 54782706 A C LILRB2 Missense_Mutation p.C306G 0.41 deleterious(0) benign(0.129) TCGA-ER-A19G-06 19 54803596 54803596 C T LILRA3 Silent p.E76E 0.60 TCGA-ER-A19G-06 19 55045004 55045004 G A KIR3DX1 Missense_Mutation p.G42R 0.21 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 19 55045005 55045005 G A KIR3DX1 Missense_Mutation p.G42E 0.24 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 19 55144201 55144201 C T LILRB1 Silent p.I316I 0.21 TCGA-ER-A19G-06 19 55447766 55447766 C T NLRP7 Silent p.R721R 0.52 TCGA-ER-A19G-06 19 55452870 55452870 C T NLRP7 Silent p.A70A 0.30 TCGA-ER-A19G-06 19 56244857 56244857 C T NLRP9 Missense_Mutation p.E114K 0.33 deleterious(0) probably_damaging(0.922) TCGA-ER-A19G-06 19 56297047 56297047 G A NLRP11 Missense_Mutation p.P1016S 0.29 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ER-A19G-06 19 56443625 56443625 A C NLRP13 Missense_Mutation p.L18R 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 19 57088460 57088460 C T ZNF470 Silent p.D221D 0.36 TCGA-ER-A19G-06 19 58383959 58383959 G A ZNF814 3'UTR 0.33 TCGA-ER-A19G-06 19 7754204 7754204 C T FCER2 Missense_Mutation p.V281M 0.30 deleterious(0) probably_damaging(0.998) TCGA-ER-A19G-06 19 7796641 7796641 C T CLEC4G Nonsense_Mutation p.W24* 0.33 TCGA-ER-A19G-06 19 9048458 9048458 G A MUC16 Missense_Mutation p.P11058L 0.40 benign(0.001) TCGA-ER-A19G-06 19 9062685 9062685 C T MUC16 Nonsense_Mutation p.W8254* 0.37 TCGA-ER-A19G-06 19 9066772 9066772 C T MUC16 Missense_Mutation p.E6892K 0.27 unknown(0) TCGA-ER-A19G-06 19 9296779 9296779 C T OR7D2 Missense_Mutation p.P108S 0.22 tolerated_low_confidence(0.22) benign(0.002) TCGA-ER-A19G-06 19 9325290 9325290 G A OR7D4 Missense_Mutation p.S75F 0.31 deleterious(0) possibly_damaging(0.885) TCGA-ER-A19G-06 19 9362280 9362280 C T OR7E24 Silent p.F187F 0.26 TCGA-ER-A19G-06 1 104163219 104163219 G A AMY2A Missense_Mutation p.G264D 0.23 tolerated(0.28) benign(0.025) TCGA-ER-A19G-06 1 10521492 10521492 G A DFFA 3'UTR 0.50 TCGA-ER-A19G-06 1 111783990 111783990 G A CHI3L2 Silent p.Q320Q 0.46 TCGA-ER-A19G-06 1 11561454 11561454 G A PTCHD2 Silent p.R135R 0.33 TCGA-ER-A19G-06 1 12921607 12921607 G A PRAMEF2 Silent p.E466E 0.14 TCGA-ER-A19G-06 1 13695858 13695858 G A PRAMEF19 Silent p.I369I 0.45 TCGA-ER-A19G-06 1 144892467 144892467 A G PDE4DIP Intron 0.12 TCGA-ER-A19G-06 1 147230938 147230938 C T GJA5 Missense_Mutation p.E137K 0.25 tolerated(0.62) benign(0.001) TCGA-ER-A19G-06 1 148251740 148251740 G A NBPF20 3'UTR 0.30 TCGA-ER-A19G-06 1 149858185 149858185 A G HIST2H2BE Silent p.P2P 0.33 TCGA-ER-A19G-06 1 150921900 150921900 C T SETDB1 Silent p.S493S 0.35 TCGA-ER-A19G-06 1 151108200 151108200 G A SEMA6C Missense_Mutation p.P434S 0.29 deleterious(0) possibly_damaging(0.511) TCGA-ER-A19G-06 1 152058027 152058027 C T TCHHL1 Missense_Mutation p.G711R 0.47 tolerated(0.08) benign(0.049) TCGA-ER-A19G-06 1 152185756 152185756 G A HRNR Silent p.S2783S 0.24 TCGA-ER-A19G-06 1 152277655 152277655 G A FLG Missense_Mutation p.S3236F 0.29 unknown(0) TCGA-ER-A19G-06 1 152282067 152282067 G A FLG Silent p.F1765F 0.40 TCGA-ER-A19G-06 1 152283067 152283067 C T FLG Missense_Mutation p.G1432E 0.43 probably_damaging(0.931) TCGA-ER-A19G-06 1 153923935 153923935 G A CRTC2 Missense_Mutation p.S402F 0.43 tolerated(0.08) possibly_damaging(0.548) TCGA-ER-A19G-06 1 154941262 154941262 C A SHC1 Silent p.A205A 0.49 TCGA-ER-A19G-06 1 157556119 157556119 C T FCRL4 Missense_Mutation p.R325Q 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A19G-06 1 158300748 158300748 G A CD1B Missense_Mutation p.H56Y 0.33 deleterious(0.03) possibly_damaging(0.67) TCGA-ER-A19G-06 1 158450327 158450327 C T OR10R2 Silent p.F220F 0.32 TCGA-ER-A19G-06 1 158604457 158604457 T G SPTA1 Missense_Mutation p.K1814T 0.20 deleterious(0.01) benign(0.049) TCGA-ER-A19G-06 1 159277733 159277733 C T FCER1A 3'UTR 0.42 TCGA-ER-A19G-06 1 164769100 164769100 C T PBX1 Silent p.I225I 0.34 TCGA-ER-A19G-06 1 167515488 167515488 G A CREG1 Missense_Mutation p.S170L 0.42 tolerated(0.06) probably_damaging(0.997) TCGA-ER-A19G-06 1 172011255 172011255 C T DNM3 Missense_Mutation p.H367Y 0.35 deleterious(0.01) probably_damaging(0.966) TCGA-ER-A19G-06 1 172634971 172634971 G A FASLG Missense_Mutation p.D221N 0.27 tolerated(0.14) probably_damaging(0.958) TCGA-ER-A19G-06 1 173493180 173493180 G A SLC9C2 Silent p.P856P 0.32 TCGA-ER-A19G-06 1 173567103 173567103 T A SLC9C2 Missense_Mutation p.L99F 0.41 deleterious(0.01) probably_damaging(0.961) TCGA-ER-A19G-06 1 175304902 175304902 C T TNR Silent p.R1192R 0.34 TCGA-ER-A19G-06 1 176526248 176526248 T C PAPPA2 Missense_Mutation p.Y264H 0.32 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 1 177250484 177250484 G A BRINP2 Silent p.R724R 0.36 TCGA-ER-A19G-06 1 179095764 179095764 C T ABL2 Nonsense_Mutation p.W145* 0.60 TCGA-ER-A19G-06 1 183502837 183502837 T C SMG7 Missense_Mutation p.C345R 0.29 tolerated(0.46) benign(0.016) TCGA-ER-A19G-06 1 200967659 200967659 C T KIF21B Missense_Mutation p.E644K 0.42 tolerated(0.13) probably_damaging(0.986) TCGA-ER-A19G-06 1 201052399 201052399 G A CACNA1S Silent p.I428I 0.41 TCGA-ER-A19G-06 1 201970811 201970811 C T RNPEP Nonsense_Mutation p.R448* 0.44 TCGA-ER-A19G-06 1 205028341 205028341 C T CNTN2 Missense_Mutation p.S206F 0.29 tolerated(0.16) benign(0.264) TCGA-ER-A19G-06 1 20517366 20517366 C T UBXN10 Silent p.P104P 0.54 TCGA-ER-A19G-06 1 209950801 209950801 C T TRAF3IP3 Silent p.D386D 0.24 TCGA-ER-A19G-06 1 217947879 217947879 G A SPATA17 Silent p.Q241Q 0.52 TCGA-ER-A19G-06 1 218458654 218458654 G A RRP15 5'UTR 0.39 TCGA-ER-A19G-06 1 223568396 223568396 G A C1orf65 Missense_Mutation p.D527N 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 1 223939704 223939704 C T CAPN2 Missense_Mutation p.P302L 0.40 tolerated(0.06) possibly_damaging(0.556) TCGA-ER-A19G-06 1 226413317 226413317 C T MIXL1 Missense_Mutation p.T168M 0.25 tolerated(0.11) benign(0.004) TCGA-ER-A19G-06 1 227152968 227152968 C T ADCK3 Missense_Mutation p.P149S 0.29 tolerated(0.23) benign(0.004) TCGA-ER-A19G-06 1 230979419 230979419 G A C1orf198 Missense_Mutation p.P203L 0.51 tolerated(0.19) benign(0.066) TCGA-ER-A19G-06 1 231954099 231954099 A T DISC1 Missense_Mutation p.D606V 0.48 deleterious(0) probably_damaging(0.967) TCGA-ER-A19G-06 1 23208887 23208887 C T EPHB2 Missense_Mutation p.R447C 0.18 deleterious(0.04) possibly_damaging(0.84) TCGA-ER-A19G-06 1 233225830 233225830 C T PCNXL2 Silent p.V1351V 0.29 TCGA-ER-A19G-06 1 236154255 236154255 C T NID1 Silent p.K953K 0.28 TCGA-ER-A19G-06 1 236343179 236343179 G A GPR137B Missense_Mutation p.G230S 0.20 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 1 237758871 237758871 G A RYR2 Missense_Mutation p.G1504R 0.19 probably_damaging(0.997) TCGA-ER-A19G-06 1 240071104 240071104 G A CHRM3 Missense_Mutation p.G118E 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 1 240975334 240975334 C T RGS7 Silent p.P322P 0.32 TCGA-ER-A19G-06 1 24484058 24484058 G A IFNLR1 Silent p.V375V 0.53 TCGA-ER-A19G-06 1 247978545 247978545 A C OR14A16 Missense_Mutation p.S163A 0.20 tolerated(0.25) probably_damaging(0.974) TCGA-ER-A19G-06 1 248028016 248028016 G A TRIM58 Missense_Mutation p.E176K 0.30 tolerated(0.42) benign(0.034) TCGA-ER-A19G-06 1 248112159 248112159 C T OR2L13 Intron 0.22 TCGA-ER-A19G-06 1 248366744 248366744 C T OR2M3 Silent p.A125A 0.13 TCGA-ER-A19G-06 1 248569331 248569331 C T OR2T1 Silent p.F12F 0.43 TCGA-ER-A19G-06 1 248616389 248616389 C T OR2T2 Silent p.G97G 0.22 TCGA-ER-A19G-06 1 248737705 248737705 G A OR2T34 Silent p.F118F 0.44 TCGA-ER-A19G-06 1 31656830 31656830 G A NKAIN1 Missense_Mutation p.S102F 0.32 deleterious(0) probably_damaging(0.998) TCGA-ER-A19G-06 1 31744311 31744311 G A SNRNP40 Silent p.T230T 0.55 TCGA-ER-A19G-06 1 32265727 32265727 G A SPOCD1 Missense_Mutation p.P540S 0.64 tolerated(0.13) benign(0.253) TCGA-ER-A19G-06 1 32682831 32682831 C T TMEM234 Intron 0.26 TCGA-ER-A19G-06 1 34189828 34189828 G A CSMD2 Silent p.C950C 0.12 TCGA-ER-A19G-06 1 35251051 35251051 T C GJB3 Missense_Mutation p.S230P 0.28 tolerated(0.4) benign(0) TCGA-ER-A19G-06 1 36383199 36383199 C T AGO1 Silent p.L678L 0.25 TCGA-ER-A19G-06 1 37271706 37271706 C T GRIK3 Missense_Mutation p.M771I 0.44 tolerated(0.24) benign(0.006) TCGA-ER-A19G-06 1 40928144 40928144 C T ZFP69B Missense_Mutation p.S163L 0.50 tolerated(0.08) probably_damaging(0.992) TCGA-ER-A19G-06 1 42047905 42047905 A G HIVEP3 Missense_Mutation p.V855A 0.24 benign(0.341) TCGA-ER-A19G-06 1 43649360 43649360 C T WDR65 Silent p.S191S 0.25 TCGA-ER-A19G-06 1 43891205 43891205 C T SZT2 Silent p.L902L 0.21 TCGA-ER-A19G-06 1 46120229 46120229 C T GPBP1L1 Missense_Mutation p.E155K 0.26 tolerated(0.27) benign(0.034) TCGA-ER-A19G-06 1 55451846 55451846 G A TMEM61 Missense_Mutation p.G31E 0.57 deleterious(0) probably_damaging(0.988) TCGA-ER-A19G-06 1 58946724 58946724 C T OMA1 Silent p.T496T 0.51 TCGA-ER-A19G-06 1 64698315 64698315 A G UBE2U Missense_Mutation p.E193G 0.21 deleterious(0.01) possibly_damaging(0.626) TCGA-ER-A19G-06 1 6527632 6527632 C T PLEKHG5 Silent p.S1083S 0.20 TCGA-ER-A19G-06 1 6528517 6528517 G A PLEKHG5 Silent p.A872A 0.43 TCGA-ER-A19G-06 1 65860679 65860679 C T DNAJC6 Missense_Mutation p.L668F 0.23 tolerated(0.71) probably_damaging(0.951) TCGA-ER-A19G-06 1 6680321 6680321 C T PHF13 Silent p.I200I 0.30 TCGA-ER-A19G-06 1 68591997 68591997 C T WLS Intron 0.30 TCGA-ER-A19G-06 1 78958951 78958951 C T PTGFR Nonsense_Mutation p.R175* 0.45 TCGA-ER-A19G-06 1 92554331 92554331 C T BTBD8 Missense_Mutation p.L76F 0.27 deleterious(0.01) possibly_damaging(0.489) TCGA-ER-A19G-06 1 93298955 93298955 A T RPL5 Nonsense_Mutation p.K5* 0.55 TCGA-ER-A19G-06 1 94502706 94502706 C T ABCA4 Missense_Mutation p.E1270K 0.54 deleterious(0) probably_damaging(0.972) TCGA-ER-A19G-06 1 9787030 9787030 G A PIK3CD Missense_Mutation p.E1021K 0.53 deleterious(0) probably_damaging(0.997) TCGA-ER-A19G-06 20 31024516 31024516 C T ASXL1 Missense_Mutation p.P1334L 0.39 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-ER-A19G-06 20 34091156 34091156 C T CEP250 Silent p.L1653L 0.34 TCGA-ER-A19G-06 20 34288725 34288725 G T ROMO1 Missense_Mutation p.G46V 0.21 deleterious(0) possibly_damaging(0.866) TCGA-ER-A19G-06 20 3679968 3679968 G A SIGLEC1 Missense_Mutation p.P556L 0.45 deleterious(0.03) possibly_damaging(0.67) TCGA-ER-A19G-06 20 3680096 3680096 G A SIGLEC1 Silent p.L513L 0.38 TCGA-ER-A19G-06 20 36867950 36867950 G A KIAA1755 Missense_Mutation p.S576F 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 20 3687130 3687130 C T SIGLEC1 Silent p.G91G 0.27 TCGA-ER-A19G-06 20 40733337 40733337 C T PTPRT Missense_Mutation p.D1138N 0.37 deleterious(0) probably_damaging(0.998) TCGA-ER-A19G-06 20 40748607 40748607 T C PTPRT Missense_Mutation p.Y951C 0.05 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 20 42695394 42695394 C T TOX2 Missense_Mutation p.P461S 0.36 tolerated(0.49) benign(0.016) TCGA-ER-A19G-06 20 51870703 51870703 G A TSHZ2 Missense_Mutation p.E236K 0.40 tolerated(0.12) probably_damaging(0.998) TCGA-ER-A19G-06 20 5283294 5283294 G A PROKR2 Missense_Mutation p.L183F 0.31 tolerated(0.11) benign(0.25) TCGA-ER-A19G-06 20 56138761 56138761 C T PCK1 Silent p.A313A 0.32 TCGA-ER-A19G-06 20 56185226 56185226 C T ZBP1 Missense_Mutation p.G358R 0.22 tolerated(0.2) benign(0) TCGA-ER-A19G-06 20 56185227 56185227 C T ZBP1 Silent p.E357E 0.22 TCGA-ER-A19G-06 20 57428691 57428691 C T GNAS Missense_Mutation p.P124L 0.28 tolerated_low_confidence(0.31) unknown(0) TCGA-ER-A19G-06 20 57429123 57429123 C T GNAS Missense_Mutation p.P268L 0.36 tolerated_low_confidence(0.05) unknown(0) TCGA-ER-A19G-06 20 57829713 57829713 G A ZNF831 Missense_Mutation p.S1650N 0.31 deleterious(0.05) benign(0.004) TCGA-ER-A19G-06 20 9547011 9547011 C T PAK7 Silent p.Q337Q 0.40 TCGA-ER-A19G-06 21 10862898 10862898 A C IGHV1OR21-1 Missense_Mutation p.E65A 0.19 deleterious(0) possibly_damaging(0.72) TCGA-ER-A19G-06 21 10916473 10916473 C T TPTE Silent p.K391K 0.33 TCGA-ER-A19G-06 21 19629025 19629025 G A CHODL Silent p.G93G 0.38 TCGA-ER-A19G-06 21 30316752 30316752 G A LTN1 Missense_Mutation p.S1358F 0.38 deleterious(0.04) possibly_damaging(0.79) TCGA-ER-A19G-06 21 34951847 34951847 T C DONSON Missense_Mutation p.T458A 0.37 tolerated(0.28) benign(0.012) TCGA-ER-A19G-06 21 41668072 41668072 C T DSCAM Missense_Mutation p.D698N 0.43 tolerated(0.66) benign(0.014) TCGA-ER-A19G-06 21 41725663 41725663 C T DSCAM Silent p.A221A 0.43 TCGA-ER-A19G-06 21 45499524 45499524 C T TRAPPC10 Missense_Mutation p.P517S 0.32 tolerated(0.06) possibly_damaging(0.501) TCGA-ER-A19G-06 21 45786783 45786783 C T TRPM2 Silent p.F190F 0.58 TCGA-ER-A19G-06 21 47549102 47549102 C T COL6A2 Intron 0.21 TCGA-ER-A19G-06 22 20796379 20796379 T C KLHL22 Missense_Mutation p.D629G 0.15 deleterious_low_confidence(0.01) benign(0.355) TCGA-ER-A19G-06 22 24122788 24122788 C T MMP11 Silent p.L168L 0.83 TCGA-ER-A19G-06 22 26743711 26743711 G A SEZ6L Missense_Mutation p.D747N 0.84 deleterious(0.03) probably_damaging(1) TCGA-ER-A19G-06 22 31059833 31059833 G A DUSP18 Missense_Mutation p.S53L 0.78 deleterious(0.03) probably_damaging(0.99) TCGA-ER-A19G-06 22 36892219 36892219 G A FOXRED2 Silent p.P473P 0.77 TCGA-ER-A19G-06 22 41257784 41257784 C T DNAJB7 Missense_Mutation p.G72E 0.80 deleterious(0) probably_damaging(0.966) TCGA-ER-A19G-06 22 42608428 42608428 G A TCF20 Missense_Mutation p.R962C 0.80 probably_damaging(0.993) TCGA-ER-A19G-06 22 43996104 43996104 T C EFCAB6 Silent p.E907E 0.29 TCGA-ER-A19G-06 22 45959046 45959046 C T FBLN1 Intron 0.82 TCGA-ER-A19G-06 2 101010059 101010059 A G CHST10 Missense_Mutation p.F240S 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 2 10267090 10267090 A C RRM2 Missense_Mutation p.T280P 0.23 tolerated_low_confidence(0.1) benign(0.003) TCGA-ER-A19G-06 2 106694293 106694293 C T C2orf40 Nonsense_Mutation p.Q120* 0.33 TCGA-ER-A19G-06 2 107450539 107450539 C T ST6GAL2 Missense_Mutation p.G336E 0.37 probably_damaging(0.999) TCGA-ER-A19G-06 2 11780452 11780452 T A GREB1 Missense_Mutation p.S1908T 0.36 tolerated(0.05) probably_damaging(0.997) TCGA-ER-A19G-06 2 121726354 121726354 C T GLI2 Silent p.S236S 0.36 TCGA-ER-A19G-06 2 125261885 125261885 C T CNTNAP5 Missense_Mutation p.S359F 0.29 deleterious(0.02) probably_damaging(0.935) TCGA-ER-A19G-06 2 125367418 125367418 G A CNTNAP5 Silent p.G598G 0.28 TCGA-ER-A19G-06 2 131785610 131785610 C T ARHGEF4 Missense_Mutation p.H174Y 0.29 tolerated(0.12) possibly_damaging(0.783) TCGA-ER-A19G-06 2 133486512 133486512 G A NCKAP5 Silent p.S1819S 0.34 TCGA-ER-A19G-06 2 137988738 137988738 C T THSD7B Silent p.S616S 0.50 TCGA-ER-A19G-06 2 141072529 141072529 T G LRP1B Silent p.G4260G 0.25 TCGA-ER-A19G-06 2 141081480 141081480 G A LRP1B Missense_Mutation p.R4166C 0.27 possibly_damaging(0.689) TCGA-ER-A19G-06 2 152496875 152496875 C T NEB Silent p.Q2893Q 0.27 TCGA-ER-A19G-06 2 152711872 152711872 T G CACNB4 Missense_Mutation p.I296L 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-ER-A19G-06 2 158412824 158412824 G A ACVR1C Missense_Mutation p.L109F 0.33 tolerated(0.73) benign(0.025) TCGA-ER-A19G-06 2 165984373 165984373 C T SCN3A Missense_Mutation p.G1054E 0.44 tolerated(1) benign(0.187) TCGA-ER-A19G-06 2 166032948 166032948 G A SCN3A 5'UTR 0.33 TCGA-ER-A19G-06 2 166535361 166535361 C T CSRNP3 Missense_Mutation p.P286S 0.46 tolerated(0.43) benign(0.124) TCGA-ER-A19G-06 2 168100212 168100212 A C XIRP2 Silent p.A770A 0.41 TCGA-ER-A19G-06 2 178936519 178936519 G A PDE11A Missense_Mutation p.L216F 0.35 deleterious(0) probably_damaging(0.969) TCGA-ER-A19G-06 2 179402191 179402191 G T TTN Missense_Mutation p.T33248N 0.25 TCGA-ER-A19G-06 2 179462310 179462310 T G TTN Missense_Mutation p.N19167H 0.36 TCGA-ER-A19G-06 2 179500945 179500945 T C TTN Missense_Mutation p.T13785A 0.50 TCGA-ER-A19G-06 2 179647676 179647676 G A TTN Missense_Mutation p.S986F 0.35 TCGA-ER-A19G-06 2 182850861 182850861 G A PPP1R1C Silent p.K8K 0.36 TCGA-ER-A19G-06 2 186670672 186670672 A C FSIP2 Missense_Mutation p.S5636R 0.41 benign(0.089) TCGA-ER-A19G-06 2 191922945 191922945 C A STAT4 Missense_Mutation p.K365N 0.38 tolerated(0.06) possibly_damaging(0.707) TCGA-ER-A19G-06 2 210560314 210560314 C T MAP2 Silent p.L1140L 0.63 TCGA-ER-A19G-06 2 21241968 21241968 C T APOB Missense_Mutation p.R1006K 0.39 benign(0.002) TCGA-ER-A19G-06 2 216213859 216213859 C T ATIC Missense_Mutation p.P516S 0.45 deleterious(0) benign(0.263) TCGA-ER-A19G-06 2 220370427 220370427 C T GMPPA Intron 0.32 TCGA-ER-A19G-06 2 225266082 225266082 G A FAM124B Missense_Mutation p.S135F 0.42 deleterious(0.01) possibly_damaging(0.485) TCGA-ER-A19G-06 2 228153937 228153937 G A COL4A3 Missense_Mutation p.G985R 0.29 unknown(0) TCGA-ER-A19G-06 2 228172560 228172560 G A COL4A3 Missense_Mutation p.G1463R 0.30 unknown(0) TCGA-ER-A19G-06 2 228881545 228881545 G A SPHKAP Missense_Mutation p.S1342L 0.31 tolerated(0.76) benign(0.001) TCGA-ER-A19G-06 2 228884134 228884134 G A SPHKAP Missense_Mutation p.T479I 0.27 tolerated(0.39) benign(0.022) TCGA-ER-A19G-06 2 233244608 233244608 G A ALPP Missense_Mutation p.D207N 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 2 237276886 237276886 G A IQCA1 Silent p.S540S 0.31 TCGA-ER-A19G-06 2 240969565 240969565 G A OR6B2 Silent p.F94F 0.34 TCGA-ER-A19G-06 2 241078535 241078535 G A OTOS 3'UTR 0.60 TCGA-ER-A19G-06 2 241808652 241808652 C T AGXT Silent p.V77V 0.36 TCGA-ER-A19G-06 2 26462009 26462009 A C HADHA Missense_Mutation p.Y24D 0.33 tolerated(0.15) benign(0.042) TCGA-ER-A19G-06 2 26705273 26705273 C T OTOF Splice_Site p.X527_splice 0.33 TCGA-ER-A19G-06 2 26705274 26705274 C T OTOF Missense_Mutation p.G527S 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 2 28113191 28113191 G A RBKS Nonsense_Mutation p.Q8* 0.36 TCGA-ER-A19G-06 2 28113192 28113192 G A RBKS Silent p.P7P 0.36 TCGA-ER-A19G-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.35 TCGA-ER-A19G-06 2 31178493 31178493 C T GALNT14 Silent p.R220R 0.28 TCGA-ER-A19G-06 2 39240630 39240630 C A SOS1 Missense_Mutation p.R713L 0.28 deleterious(0.05) possibly_damaging(0.489) TCGA-ER-A19G-06 2 55566693 55566693 G A CCDC88A Silent p.T475T 0.24 TCGA-ER-A19G-06 2 71591243 71591243 C T ZNF638 Silent p.C526C 0.40 TCGA-ER-A19G-06 2 72359686 72359686 C T CYP26B1 Silent p.A403A 0.54 TCGA-ER-A19G-06 2 73784358 73784358 C T ALMS1 Nonsense_Mutation p.Q3363* 0.40 TCGA-ER-A19G-06 2 74042413 74042413 G A C2orf78 Missense_Mutation p.E355K 0.40 deleterious(0.02) benign(0.076) TCGA-ER-A19G-06 2 74688356 74688356 G C MOGS 3'UTR 0.36 TCGA-ER-A19G-06 2 97881266 97881266 C T ANKRD36 Silent p.F1235F 0.30 TCGA-ER-A19G-06 2 99695239 99695239 T G TSGA10 Missense_Mutation p.E255D 0.11 tolerated(0.11) benign(0.063) TCGA-ER-A19G-06 3 100961721 100961721 C T IMPG2 Missense_Mutation p.G945R 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 3 102187967 102187967 C T ZPLD1 Silent p.P323P 0.27 TCGA-ER-A19G-06 3 10391802 10391802 C T ATP2B2 Missense_Mutation p.V800I 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19G-06 3 108135721 108135721 C T MYH15 Missense_Mutation p.E1316K 0.34 tolerated(0.24) possibly_damaging(0.856) TCGA-ER-A19G-06 3 108572538 108572538 G A TRAT1 Silent p.R125R 0.43 TCGA-ER-A19G-06 3 108723921 108723921 G A MORC1 Missense_Mutation p.S670F 0.28 tolerated(0.07) benign(0.035) TCGA-ER-A19G-06 3 109049504 109049504 G A DPPA4 Silent p.S182S 0.33 TCGA-ER-A19G-06 3 120976086 120976086 C T STXBP5L Missense_Mutation p.L580F 0.41 tolerated(0.73) benign(0.304) TCGA-ER-A19G-06 3 121340659 121340659 C T FBXO40 Missense_Mutation p.A128V 0.41 deleterious(0) probably_damaging(0.991) TCGA-ER-A19G-06 3 124739640 124739640 G A HEG1 Silent p.S416S 0.34 TCGA-ER-A19G-06 3 126226832 126226832 C T UROC1 Missense_Mutation p.R173Q 0.40 deleterious(0) probably_damaging(0.988) TCGA-ER-A19G-06 3 13438860 13438860 C T NUP210 Missense_Mutation p.E145K 0.48 tolerated(0.08) benign(0.228) TCGA-ER-A19G-06 3 136701038 136701038 C T IL20RB Silent p.I84I 0.32 TCGA-ER-A19G-06 3 142215245 142215245 G A ATR Silent p.L1952L 0.57 TCGA-ER-A19G-06 3 142405183 142405183 G A PLS1 Missense_Mutation p.G316R 0.49 tolerated(0.55) benign(0.006) TCGA-ER-A19G-06 3 15115510 15115510 C T ZFYVE20 Missense_Mutation p.E712K 0.33 tolerated_low_confidence(0.13) benign(0.027) TCGA-ER-A19G-06 3 161214851 161214851 C T OTOL1 Missense_Mutation p.P86S 0.51 deleterious(0.03) unknown(0) TCGA-ER-A19G-06 3 171427469 171427469 T G PLD1 Missense_Mutation p.R314S 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 3 171427470 171427470 C T PLD1 Missense_Mutation p.R314K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A19G-06 3 182925526 182925547 TCCTTCATTTTATAACGATCCT - MCF2L2 Frame_Shift_Del p.K854Ifs*2 0.22 TCGA-ER-A19G-06 3 193272685 193272686 AA - ATP13A4 5'UTR 0.29 TCGA-ER-A19G-06 3 194062986 194062986 G A CPN2 Missense_Mutation p.S149F 0.39 tolerated(0.1) benign(0.06) TCGA-ER-A19G-06 3 19975432 19975432 G A EFHB Missense_Mutation p.P27S 0.38 tolerated_low_confidence(0.08) benign(0.014) TCGA-ER-A19G-06 3 20153274 20153274 C T KAT2B Silent p.F346F 0.24 TCGA-ER-A19G-06 3 32995941 32995941 C A CCR4 Missense_Mutation p.P343T 0.13 tolerated(0.72) benign(0.002) TCGA-ER-A19G-06 3 35725538 35725538 G A ARPP21 Intron 0.49 TCGA-ER-A19G-06 3 40523445 40523445 C T ZNF619 Missense_Mutation p.P39L 0.39 deleterious(0.01) benign(0.017) TCGA-ER-A19G-06 3 42739839 42739839 C T HHATL Missense_Mutation p.G163E 0.36 tolerated(0.14) benign(0.232) TCGA-ER-A19G-06 3 46497363 46497363 G A LTF Missense_Mutation p.T141I 0.38 deleterious(0) probably_damaging(0.978) TCGA-ER-A19G-06 3 49159020 49159020 T C LAMB2 Silent p.L1702L 0.13 TCGA-ER-A19G-06 3 52356589 52356589 G A DNAH1 Missense_Mutation p.G44E 0.40 benign(0.002) TCGA-ER-A19G-06 3 53845310 53845310 C T CACNA1D Silent p.P2141P 0.26 TCGA-ER-A19G-06 3 8794813 8794813 G A OXTR Silent p.L340L 0.25 TCGA-ER-A19G-06 3 97194224 97194224 G A EPHA6 Silent p.Q641Q 0.58 TCGA-ER-A19G-06 4 114294517 114294517 C T ANK2 Missense_Mutation p.P3924L 0.67 benign(0.025) TCGA-ER-A19G-06 4 119472291 119472291 C T CEP170P1 RNA 0.62 TCGA-ER-A19G-06 4 151114386 151114386 C T DCLK2 Missense_Mutation p.H285Y 0.69 tolerated(0.08) possibly_damaging(0.905) TCGA-ER-A19G-06 4 165890999 165890999 G A TRIM61 Silent p.P52P 0.68 TCGA-ER-A19G-06 4 3430239 3430239 C T RGS12 Intron 0.72 TCGA-ER-A19G-06 4 39456226 39456226 G A RPL9 Silent p.I172I 0.67 TCGA-ER-A19G-06 4 48545867 48545867 G A FRYL Missense_Mutation p.S1850F 0.71 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 4 52861333 52861333 C T LRRC66 Missense_Mutation p.E619K 0.71 deleterious(0.05) possibly_damaging(0.904) TCGA-ER-A19G-06 4 53731993 53731993 G A RASL11B 3'UTR 0.50 TCGA-ER-A19G-06 4 55955942 55955943 GG C KDR Frame_Shift_Del p.P1074Qfs*28 0.33 TCGA-ER-A19G-06 4 70710024 70710024 G A SULT1E1 Silent p.F209F 0.62 TCGA-ER-A19G-06 4 74277741 74277741 C T ALB Missense_Mutation p.P248S 0.63 deleterious(0) probably_damaging(0.995) TCGA-ER-A19G-06 4 78532271 78532271 C T CXCL13 3'UTR 0.79 TCGA-ER-A19G-06 4 82125817 82125817 G A PRKG2 Missense_Mutation p.P129S 0.64 tolerated(0.23) probably_damaging(0.999) TCGA-ER-A19G-06 5 1053505 1053505 T C SLC12A7 Missense_Mutation p.N1040S 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-ER-A19G-06 5 118576136 118576136 C T DMXL1 Missense_Mutation p.L2871F 0.51 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 5 13737376 13737376 C T DNAH5 Missense_Mutation p.E3814K 0.76 benign(0.292) TCGA-ER-A19G-06 5 13763005 13763005 G A DNAH5 Silent p.F3369F 0.85 TCGA-ER-A19G-06 5 138209934 138209934 G A LRRTM2 Nonsense_Mutation p.Q106* 0.17 TCGA-ER-A19G-06 5 13891126 13891126 C T DNAH5 Missense_Mutation p.E846K 0.48 benign(0.001) TCGA-ER-A19G-06 5 140062741 140062741 G A HARS Missense_Mutation p.R82C 0.26 deleterious(0.01) benign(0.008) TCGA-ER-A19G-06 5 140167118 140167118 C T PCDHA1 Missense_Mutation p.R415C 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.61) TCGA-ER-A19G-06 5 140174764 140174764 G A PCDHA2 Missense_Mutation p.G72E 0.40 tolerated_low_confidence(0.05) benign(0.252) TCGA-ER-A19G-06 5 140182643 140182643 C T PCDHA3 Missense_Mutation p.P621S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.677) TCGA-ER-A19G-06 5 140182644 140182644 C T PCDHA3 Missense_Mutation p.P621L 0.22 tolerated_low_confidence(0.08) benign(0.145) TCGA-ER-A19G-06 5 140229697 140229697 C G PCDHA9 Missense_Mutation p.D539E 0.46 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ER-A19G-06 5 140256014 140256014 G A PCDHA12 Silent p.Q319Q 0.51 TCGA-ER-A19G-06 5 140503257 140503257 C T PCDHB4 Silent p.F559F 0.39 TCGA-ER-A19G-06 5 140554534 140554534 C T PCDHB7 Silent p.F706F 0.30 TCGA-ER-A19G-06 5 140559298 140559298 C T PCDHB8 Silent p.F561F 0.27 TCGA-ER-A19G-06 5 140563504 140563504 C T PCDHB16 Missense_Mutation p.T457I 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.461) TCGA-ER-A19G-06 5 140626131 140626131 G A PCDHB15 Missense_Mutation p.G329R 0.23 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-ER-A19G-06 5 140865237 140865237 C T PCDHGC4 Missense_Mutation p.S166L 0.49 deleterious(0) probably_damaging(0.995) TCGA-ER-A19G-06 5 141993542 141993542 C T FGF1 Missense_Mutation p.D51N 0.44 deleterious(0.01) possibly_damaging(0.595) TCGA-ER-A19G-06 5 1422009 1422009 G A SLC6A3 Silent p.G258G 0.38 TCGA-ER-A19G-06 5 145483828 145483828 G A PLAC8L1 Missense_Mutation p.S16F 0.27 tolerated(0.25) possibly_damaging(0.548) TCGA-ER-A19G-06 5 145894714 145894714 C T GPR151 Nonsense_Mutation p.W321* 0.30 TCGA-ER-A19G-06 5 145972568 145972568 C T PPP2R2B Missense_Mutation p.D343N 0.41 deleterious(0.02) benign(0.438) TCGA-ER-A19G-06 5 151784168 151784168 G A NMUR2 Silent p.I169I 0.38 TCGA-ER-A19G-06 5 153755896 153755896 C T GALNT10 Nonsense_Mutation p.R210* 0.31 TCGA-ER-A19G-06 5 154193632 154193632 G A LARP1 Silent p.S1012S 0.41 TCGA-ER-A19G-06 5 157078245 157078245 G A SOX30 Missense_Mutation p.S281L 0.32 deleterious(0) probably_damaging(0.94) TCGA-ER-A19G-06 5 159680613 159680613 G A CCNJL Silent p.S360S 0.48 TCGA-ER-A19G-06 5 171481681 171481681 C T STK10 Silent p.E848E 0.18 TCGA-ER-A19G-06 5 176517572 176517572 C T FGFR4 Silent p.F91F 0.40 TCGA-ER-A19G-06 5 180166145 180166145 C T OR2Y1 Nonsense_Mutation p.W305* 0.45 TCGA-ER-A19G-06 5 35806838 35806838 G A SPEF2 Silent p.E1680E 0.10 TCGA-ER-A19G-06 5 35871189 35871189 C T IL7R Silent p.V137V 0.13 TCGA-ER-A19G-06 5 39308393 39308393 T C C9 Silent p.E393E 0.12 TCGA-ER-A19G-06 5 63894231 63894231 G A RGS7BP Silent p.R217R 0.41 TCGA-ER-A19G-06 5 73931417 73931417 G A ENC1 Silent p.F298F 0.28 TCGA-ER-A19G-06 6 100841376 100841376 G A SIM1 Silent p.V519V 0.18 TCGA-ER-A19G-06 6 100841464 100841464 C T SIM1 Nonsense_Mutation p.W490* 0.60 TCGA-ER-A19G-06 6 105730374 105730374 G A PREP Missense_Mutation p.P545S 0.33 tolerated(0.43) benign(0.025) TCGA-ER-A19G-06 6 116833249 116833249 C T FAM26E Silent p.S130S 0.23 TCGA-ER-A19G-06 6 117631415 117631415 G A ROS1 Missense_Mutation p.S2088F 0.40 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 6 118475765 118475765 A - SLC35F1 Frame_Shift_Del p.T111Hfs*2 0.15 TCGA-ER-A19G-06 6 144081548 144081548 A C PHACTR2 Missense_Mutation p.E155D 0.56 tolerated(0.45) probably_damaging(0.92) TCGA-ER-A19G-06 6 165832235 165832235 G A PDE10A Missense_Mutation p.R296C 0.62 deleterious(0) probably_damaging(0.961) TCGA-ER-A19G-06 6 29430399 29430399 C T OR2H1 Missense_Mutation p.P285S 0.58 deleterious(0.01) possibly_damaging(0.752) TCGA-ER-A19G-06 6 32036897 32036897 C T TNXB Silent p.T1868T 0.19 TCGA-ER-A19G-06 6 32036905 32036905 C T TNXB Missense_Mutation p.E1866K 0.17 possibly_damaging(0.737) TCGA-ER-A19G-06 6 32036906 32036906 C T TNXB Silent p.R1865R 0.18 TCGA-ER-A19G-06 6 36368262 36368262 C T PXT1 Missense_Mutation p.G90E 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19G-06 6 36368263 36368263 C T PXT1 Missense_Mutation p.G90R 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19G-06 6 38754570 38754570 C T DNAH8 Missense_Mutation p.P592S 0.16 probably_damaging(0.973) TCGA-ER-A19G-06 6 39159183 39159183 C T KCNK5 Missense_Mutation p.G328E 0.23 tolerated_low_confidence(0.42) possibly_damaging(0.881) TCGA-ER-A19G-06 6 39693057 39693057 C T KIF6 Silent p.A10A 0.43 TCGA-ER-A19G-06 6 41117417 41117417 C T TREML1 Silent p.P287P 0.43 TCGA-ER-A19G-06 6 41250298 41250298 G A TREM1 Nonsense_Mutation p.Q81* 0.66 TCGA-ER-A19G-06 6 43019484 43019484 G A CUL7 Missense_Mutation p.L284F 0.49 deleterious(0) probably_damaging(0.998) TCGA-ER-A19G-06 6 46828470 46828470 T C GPR116 Silent p.V787V 0.20 TCGA-ER-A19G-06 6 49660382 49660382 G A CRISP2 3'UTR 0.68 TCGA-ER-A19G-06 6 50016297 50016297 G A DEFB112 Missense_Mutation p.S23F 0.34 deleterious(0) possibly_damaging(0.485) TCGA-ER-A19G-06 6 54806173 54806173 A G FAM83B Missense_Mutation p.S802G 0.12 tolerated(0.32) benign(0.169) TCGA-ER-A19G-06 6 55216236 55216236 T C GFRAL Silent p.L186L 0.42 TCGA-ER-A19G-06 6 55223918 55223918 C T GFRAL Missense_Mutation p.H312Y 0.37 deleterious(0.03) possibly_damaging(0.855) TCGA-ER-A19G-06 6 55625290 55625290 C T BMP5 Missense_Mutation p.E357K 0.16 deleterious(0) probably_damaging(0.955) TCGA-ER-A19G-06 6 70064197 70064197 C T BAI3 Missense_Mutation p.P1178S 0.24 deleterious(0.02) benign(0.038) TCGA-ER-A19G-06 6 76660521 76660521 G A IMPG1 Missense_Mutation p.P528S 0.28 tolerated(0.1) benign(0.051) TCGA-ER-A19G-06 6 87726182 87726182 C T HTR1E 3'UTR 0.28 TCGA-ER-A19G-06 6 88046794 88046794 C A SMIM8 Silent p.P15P 0.53 TCGA-ER-A19G-06 7 100348354 100348354 C T ZAN Silent p.F452F 0.28 TCGA-ER-A19G-06 7 100350390 100350390 C T ZAN Missense_Mutation p.P888S 0.17 unknown(0) TCGA-ER-A19G-06 7 100350705 100350705 C T ZAN Missense_Mutation p.P993S 0.53 unknown(0) TCGA-ER-A19G-06 7 100679738 100679738 C T MUC17 Missense_Mutation p.P1681S 0.09 probably_damaging(0.993) TCGA-ER-A19G-06 7 100856396 100856396 G A PLOD3 Missense_Mutation p.P257S 0.18 deleterious(0.01) possibly_damaging(0.806) TCGA-ER-A19G-06 7 105645017 105645017 C T CDHR3 Silent p.S312S 0.48 TCGA-ER-A19G-06 7 107692596 107692596 C T LAMB4 Missense_Mutation p.D1288N 0.54 tolerated(0.43) benign(0.002) TCGA-ER-A19G-06 7 110763912 110763912 G A LRRN3 Missense_Mutation p.E362K 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 7 134625950 134625950 C T CALD1 Silent p.F498F 0.57 TCGA-ER-A19G-06 7 135262632 135262633 CT - NUP205 Frame_Shift_Del p.L247Pfs*12 0.23 TCGA-ER-A19G-06 7 138444552 138444552 C T ATP6V0A4 Missense_Mutation p.G195E 0.55 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 7 138764752 138764752 G A ZC3HAV1 Missense_Mutation p.S312L 0.52 tolerated(0.35) possibly_damaging(0.885) TCGA-ER-A19G-06 7 138853101 138853101 C T TTC26 Silent p.L321L 0.18 TCGA-ER-A19G-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-ER-A19G-06 7 141341053 141341053 G A AGK Nonsense_Mutation p.W244* 0.59 TCGA-ER-A19G-06 7 141758058 141758058 G T MGAM Missense_Mutation p.R1250L 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-ER-A19G-06 7 142131574 142131574 C T TRBV5-6 Missense_Mutation p.G61R 0.20 deleterious(0.02) possibly_damaging(0.792) TCGA-ER-A19G-06 7 142460761 142460761 G A PRSS1 Missense_Mutation p.G212R 0.63 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 7 142498753 142498753 G A TRBC2 Silent p.E10E 0.16 TCGA-ER-A19G-06 7 146825806 146825806 T G CNTNAP2 Missense_Mutation p.F321V 0.20 tolerated(1) benign(0.001) TCGA-ER-A19G-06 7 156967649 156967649 C T UBE3C Silent p.L127L 0.18 TCGA-ER-A19G-06 7 23724254 23724254 C T FAM221A Missense_Mutation p.L68F 0.57 deleterious(0.01) probably_damaging(0.984) TCGA-ER-A19G-06 7 25266264 25266264 G A NPVF Missense_Mutation p.P174S 0.16 tolerated(0.12) benign(0.147) TCGA-ER-A19G-06 7 2771124 2771124 G A GNA12 Silent p.T279T 0.49 TCGA-ER-A19G-06 7 2949686 2949686 G A CARD11 Silent p.F1086F 0.56 TCGA-ER-A19G-06 7 30496522 30496522 G A NOD1 Missense_Mutation p.H6Y 0.18 tolerated(1) benign(0) TCGA-ER-A19G-06 7 38370059 38370059 C T TRGV8 Missense_Mutation p.G80E 0.19 deleterious(0.03) possibly_damaging(0.858) TCGA-ER-A19G-06 7 42005316 42005316 C A GLI3 Missense_Mutation p.D1119Y 0.22 deleterious(0.02) possibly_damaging(0.748) TCGA-ER-A19G-06 7 53104126 53104126 C T POM121L12 Silent p.S254S 0.56 TCGA-ER-A19G-06 7 5331406 5331406 C T SLC29A4 Silent p.Y166Y 0.63 TCGA-ER-A19G-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.70 TCGA-ER-A19G-06 7 6426906 6426906 C T RAC1 Silent p.I33I 0.47 TCGA-ER-A19G-06 7 70853302 70853302 C T WBSCR17 Silent p.I168I 0.55 TCGA-ER-A19G-06 7 73279336 73279336 G A WBSCR28 Missense_Mutation p.R29Q 0.18 deleterious(0) possibly_damaging(0.776) TCGA-ER-A19G-06 7 73791003 73791003 C T CLIP2 Silent p.L758L 0.23 TCGA-ER-A19G-06 7 82545849 82545849 T G PCLO Missense_Mutation p.K3818T 0.51 unknown(0) TCGA-ER-A19G-06 7 82583366 82583366 C T PCLO Silent p.V2301V 0.14 TCGA-ER-A19G-06 7 88965293 88965293 G A ZNF804B Silent p.R999R 0.20 TCGA-ER-A19G-06 7 90896063 90896063 C T FZD1 Missense_Mutation p.S623F 0.44 deleterious(0) probably_damaging(0.991) TCGA-ER-A19G-06 7 91713966 91713966 C T AKAP9 Missense_Mutation p.P2887S 0.15 benign(0.031) TCGA-ER-A19G-06 7 94881382 94881382 G T PPP1R9A Missense_Mutation p.G869W 0.49 deleterious(0) probably_damaging(0.987) TCGA-ER-A19G-06 8 103573090 103573090 C T ODF1 Missense_Mutation p.S244F 0.31 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-ER-A19G-06 8 104898127 104898127 C T RIMS2 Missense_Mutation p.P434S 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.729) TCGA-ER-A19G-06 8 10583207 10583207 G A SOX7 3'UTR 0.31 TCGA-ER-A19G-06 8 113702234 113702234 C T CSMD3 Missense_Mutation p.G673E 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 8 11640909 11640909 G A NEIL2 Splice_Site p.X230_splice 0.38 TCGA-ER-A19G-06 8 116616576 116616576 G A TRPS1 Silent p.F540F 0.41 TCGA-ER-A19G-06 8 119209848 119209848 C T SAMD12 3'UTR 0.38 TCGA-ER-A19G-06 8 119391770 119391770 C T SAMD12 Missense_Mutation p.M164I 0.47 tolerated_low_confidence(0.05) benign(0) TCGA-ER-A19G-06 8 124117616 124117616 G A TBC1D31 Missense_Mutation p.R374K 0.41 tolerated(0.25) benign(0.002) TCGA-ER-A19G-06 8 125551345 125551345 C T TATDN1 5'Flank 0.50 TCGA-ER-A19G-06 8 131916041 131916041 C T ADCY8 Missense_Mutation p.D630N 0.32 tolerated(0.28) benign(0.281) TCGA-ER-A19G-06 8 134128868 134128868 C A TG Silent p.I2590I 0.28 TCGA-ER-A19G-06 8 135521977 135521977 G A ZFAT Missense_Mutation p.P1126L 0.31 deleterious(0.01) possibly_damaging(0.787) TCGA-ER-A19G-06 8 139163712 139163712 C T FAM135B Silent p.E1002E 0.25 TCGA-ER-A19G-06 8 139626153 139626153 C T COL22A1 Missense_Mutation p.G1312E 0.37 unknown(0) TCGA-ER-A19G-06 8 144945562 144945562 G A EPPK1 Silent p.S620S 0.50 TCGA-ER-A19G-06 8 144945889 144945889 C T EPPK1 Nonsense_Mutation p.W511* 0.52 TCGA-ER-A19G-06 8 145770733 145770733 G A ARHGAP39 Silent p.L807L 0.38 TCGA-ER-A19G-06 8 22862018 22862018 C T RHOBTB2 Missense_Mutation p.A46V 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 8 24181448 24181448 G A ADAM28 Silent p.E274E 0.35 TCGA-ER-A19G-06 8 25346122 25346122 C T CDCA2 Nonsense_Mutation p.Q530* 0.23 TCGA-ER-A19G-06 8 27146715 27146715 G A TRIM35 Missense_Mutation p.R290C 0.63 deleterious(0.01) possibly_damaging(0.708) TCGA-ER-A19G-06 8 28340964 28340964 G A FBXO16 5'UTR 0.39 TCGA-ER-A19G-06 8 55540771 55540771 G A RP1 Silent p.R1443R 0.49 TCGA-ER-A19G-06 8 62212784 62212784 G A CLVS1 Missense_Mutation p.R133Q 0.30 tolerated(0.14) possibly_damaging(0.871) TCGA-ER-A19G-06 8 68213613 68213613 G A ARFGEF1 Missense_Mutation p.P53L 0.26 tolerated(0.1) benign(0.031) TCGA-ER-A19G-06 8 6873538 6873538 C T DEFA3 Missense_Mutation p.G87R 0.30 tolerated(0.08) benign(0.034) TCGA-ER-A19G-06 8 69046488 69046488 C T PREX2 Nonsense_Mutation p.Q1321* 0.27 TCGA-ER-A19G-06 8 79710372 79710372 C T IL7 Missense_Mutation p.D28N 0.24 deleterious(0.05) probably_damaging(0.959) TCGA-ER-A19G-06 8 94828667 94828667 G A TMEM67 Missense_Mutation p.R992K 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19G-06 8 99162864 99162864 A T POP1 Missense_Mutation p.K685I 0.24 deleterious(0.01) benign(0.182) TCGA-ER-A19G-06 9 101597641 101597641 C T GALNT12 Missense_Mutation p.S343F 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A19G-06 9 101777808 101777808 C T COL15A1 Missense_Mutation p.P488L 0.35 tolerated_low_confidence(0.74) benign(0.001) TCGA-ER-A19G-06 9 104187776 104187776 G A ALDOB Missense_Mutation p.T253I 0.32 deleterious(0.01) probably_damaging(1) TCGA-ER-A19G-06 9 107607828 107607828 G A ABCA1 Missense_Mutation p.P248L 0.34 tolerated(0.29) benign(0) TCGA-ER-A19G-06 9 115422088 115422088 C T KIAA1958 Silent p.Y630Y 0.47 TCGA-ER-A19G-06 9 116931602 116931602 C T COL27A1 Silent p.A589A 0.30 TCGA-ER-A19G-06 9 117072864 117072864 C T COL27A1 Silent p.T1824T 0.35 TCGA-ER-A19G-06 9 117099518 117099518 G T AKNA Missense_Mutation p.P1379Q 0.36 tolerated(0.31) benign(0.002) TCGA-ER-A19G-06 9 123904444 123904444 C T CNTRL Silent p.L923L 0.47 TCGA-ER-A19G-06 9 125281783 125281783 C T OR1J4 Missense_Mutation p.R122W 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19G-06 9 125512946 125512946 G A OR1L6 Missense_Mutation p.V274I 0.36 tolerated(0.55) benign(0.068) TCGA-ER-A19G-06 9 128728263 128728263 G A PBX3 3'UTR 0.56 TCGA-ER-A19G-06 9 130248022 130248024 GCA - LRSAM1 In_Frame_Del p.Q391del 0.38 TCGA-ER-A19G-06 9 131088065 131088065 C T COQ4 Missense_Mutation p.P103S 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A19G-06 9 131222815 131222815 C T ODF2 Intron 0.39 TCGA-ER-A19G-06 9 131260847 131260847 G A ODF2 Missense_Mutation p.R723K 0.36 tolerated(0.47) benign(0.011) TCGA-ER-A19G-06 9 136029060 136029061 GG - GBGT1 Frame_Shift_Del p.P316Rfs*80 0.22 TCGA-ER-A19G-06 9 139272358 139272358 G A SNAPC4 Silent p.A1307A 0.29 TCGA-ER-A19G-06 9 19786624 19786624 C T SLC24A2 Missense_Mutation p.G81S 0.36 tolerated(0.92) benign(0.001) TCGA-ER-A19G-06 9 32631964 32631964 C T TAF1L Missense_Mutation p.R1205Q 0.38 deleterious(0.01) benign(0.03) TCGA-ER-A19G-06 9 69127002 69127002 C T PGM5P2 RNA 0.35 TCGA-ER-A19G-06 9 75773442 75773443 TT - ANXA1 5'UTR 0.21 TCGA-ER-A19G-06 9 78790127 78790127 G A PCSK5 Intron 0.32 TCGA-ER-A19G-06 9 79267526 79267526 A T PRUNE2 Silent p.L2810L 0.34 TCGA-ER-A19G-06 9 79323836 79323836 C T PRUNE2 Silent p.V1118V 0.36 TCGA-ER-A19G-06 9 84225190 84225190 G A TLE1 Missense_Mutation p.H426Y 0.42 deleterious(0.04) possibly_damaging(0.679) TCGA-ER-A19G-06 9 84532579 84532579 C T SPATA31D5P RNA 0.33 TCGA-ER-A19G-06 X 107400020 107400020 A G COL4A6 3'UTR 0.78 TCGA-ER-A19G-06 X 11174717 11174717 C T ARHGAP6 Silent p.L613L 0.82 TCGA-ER-A19G-06 X 112058649 112058649 G A AMOT Silent p.D443D 0.60 TCGA-ER-A19G-06 X 115593954 115593954 G A CT83 Missense_Mutation p.R22C 0.53 tolerated(0.13) possibly_damaging(0.835) TCGA-ER-A19G-06 X 119760911 119760911 G A C1GALT1C1 Silent p.H37H 0.67 TCGA-ER-A19G-06 X 129474280 129474280 A T SLC25A14 Missense_Mutation p.I10F 0.53 tolerated_low_confidence(0.15) benign(0.011) TCGA-ER-A19G-06 X 130678657 130678657 T G OR13H1 Missense_Mutation p.F204V 0.26 tolerated(0.11) possibly_damaging(0.876) TCGA-ER-A19G-06 X 150891265 150891265 C T FATE1 3'UTR 0.47 TCGA-ER-A19G-06 X 151123421 151123421 C T GABRE Missense_Mutation p.A425T 0.54 tolerated(0.42) benign(0.007) TCGA-ER-A19G-06 X 151303261 151303261 C T MAGEA10 Missense_Mutation p.E278K 0.56 deleterious(0.04) possibly_damaging(0.9) TCGA-ER-A19G-06 X 15344095 15344095 T C PIGA Silent p.G263G 0.40 TCGA-ER-A19G-06 X 153678387 153678387 C T FAM50A Silent p.F280F 0.49 TCGA-ER-A19G-06 X 2407161 2407161 G A ZBED1 Missense_Mutation p.R534W 0.68 deleterious(0.02) benign(0.232) TCGA-ER-A19G-06 X 34961290 34961290 G A FAM47B Silent p.R114R 0.52 TCGA-ER-A19G-06 X 37026709 37026709 T A FAM47C Missense_Mutation p.F76I 0.53 tolerated(0.25) possibly_damaging(0.757) TCGA-ER-A19G-06 X 49173756 49173756 G A GAGE10 Missense_Mutation p.R106K 0.66 deleterious(0.04) benign(0.021) TCGA-ER-A19G-06 X 54964045 54964045 A G PFKFB1 Missense_Mutation p.F404S 0.57 probably_damaging(1) TCGA-ER-A19G-06 X 69645640 69645640 G A GDPD2 Nonsense_Mutation p.W79* 0.67 TCGA-ER-A19G-06 X 72797281 72797281 C T CHIC1 Missense_Mutation p.S112F 0.59 deleterious(0.04) probably_damaging(0.99) TCGA-ER-A19G-06 X 77160842 77160842 T A COX7B 3'UTR 0.69 TCGA-ER-A19H-06 10 102782051 102782051 G A PDZD7 Missense_Mutation p.H212Y 0.68 deleterious(0) probably_damaging(0.992) TCGA-ER-A19H-06 10 115973123 115973123 G A TDRD1 Missense_Mutation p.G617E 0.68 tolerated(0.26) probably_damaging(0.998) TCGA-ER-A19H-06 10 135440236 135440236 C T FRG2B Missense_Mutation p.G4E 0.16 tolerated(0.2) benign(0.225) TCGA-ER-A19H-06 10 43604664 43604664 C T RET Missense_Mutation p.R417C 0.71 tolerated(0.05) possibly_damaging(0.528) TCGA-ER-A19H-06 10 47086833 47086833 G A NPY4R Missense_Mutation p.G17D 0.37 tolerated(0.15) benign(0.024) TCGA-ER-A19H-06 10 56128965 56128965 T A PCDH15 Missense_Mutation p.Y130F 0.60 tolerated(0.61) benign(0.009) TCGA-ER-A19H-06 10 61028361 61028361 C T FAM13C Silent p.R298R 0.57 TCGA-ER-A19H-06 10 61412481 61412481 C T SLC16A9 3'UTR 0.63 TCGA-ER-A19H-06 11 108382857 108382857 G A EXPH5 Missense_Mutation p.P1126L 0.44 deleterious(0) probably_damaging(0.999) TCGA-ER-A19H-06 11 113130986 113130986 G A NCAM1 Missense_Mutation p.G740E 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 11 113281470 113281470 G A DRD2 Silent p.F437F 0.22 TCGA-ER-A19H-06 11 115047109 115047109 G A CADM1 3'UTR 0.49 TCGA-ER-A19H-06 11 118245634 118245634 G A UBE4A Silent p.K387K 0.19 TCGA-ER-A19H-06 11 120983847 120983847 G A TECTA Missense_Mutation p.E185K 0.38 tolerated(0.08) benign(0.266) TCGA-ER-A19H-06 11 123755310 123755310 G A TMEM225 Missense_Mutation p.S72L 0.43 tolerated(1) possibly_damaging(0.857) TCGA-ER-A19H-06 11 124951319 124951319 C T SLC37A2 Missense_Mutation p.P233S 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-ER-A19H-06 11 128773324 128773324 T C C11orf45 Silent p.V73V 0.28 TCGA-ER-A19H-06 11 15096275 15096275 G A CALCB Missense_Mutation p.R4Q 0.23 tolerated(0.28) benign(0.002) TCGA-ER-A19H-06 11 15098881 15098881 C T CALCB Missense_Mutation p.R92W 0.30 tolerated(0.07) benign(0.391) TCGA-ER-A19H-06 11 17434947 17434947 C T ABCC8 Silent p.G823G 0.20 TCGA-ER-A19H-06 11 2167598 2167598 G A INS-IGF2 3'Flank 0.59 TCGA-ER-A19H-06 11 2182097 2182097 C T INS-IGF2 Silent p.L35L 0.37 TCGA-ER-A19H-06 11 24753676 24753676 G A LUZP2 Missense_Mutation p.D65N 0.48 tolerated(0.06) possibly_damaging(0.845) TCGA-ER-A19H-06 11 28104458 28104458 C T KIF18A Missense_Mutation p.E403K 0.21 tolerated(0.39) benign(0.004) TCGA-ER-A19H-06 11 4593511 4593511 C T C11orf40 Missense_Mutation p.E108K 0.44 tolerated_low_confidence(0.08) benign(0.188) TCGA-ER-A19H-06 11 48347263 48347263 G A OR4C3 Silent p.G257G 0.11 TCGA-ER-A19H-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.46 deleterious(0) probably_damaging(0.965) TCGA-ER-A19H-06 11 4944713 4944713 G A OR51G1 Missense_Mutation p.P286L 0.22 deleterious(0) probably_damaging(0.942) TCGA-ER-A19H-06 11 55418983 55418983 G A OR4S2 Missense_Mutation p.G202S 0.50 deleterious(0) probably_damaging(0.957) TCGA-ER-A19H-06 11 5566278 5566278 C T OR52H1 Missense_Mutation p.R159Q 0.36 deleterious(0.02) benign(0.272) TCGA-ER-A19H-06 11 57115699 57115699 C T P2RX3 Silent p.I149I 0.42 TCGA-ER-A19H-06 11 58478166 58478166 T C GLYAT Missense_Mutation p.T129A 0.21 tolerated(0.08) benign(0.068) TCGA-ER-A19H-06 11 59611434 59611434 C T GIF Silent p.L58L 0.49 TCGA-ER-A19H-06 11 62287339 62287339 G A AHNAK Silent p.S4850S 0.21 TCGA-ER-A19H-06 11 62300296 62300296 G A AHNAK Silent p.G531G 0.31 TCGA-ER-A19H-06 11 67219614 67219614 C T GPR152 Silent p.R194R 0.26 TCGA-ER-A19H-06 11 67770569 67770569 G T UNC93B1 Silent p.P105P 0.19 TCGA-ER-A19H-06 11 68517742 68517742 T A MTL5 Silent p.L129L 0.26 TCGA-ER-A19H-06 11 6891546 6891546 C T OR10A2 Silent p.I187I 0.21 TCGA-ER-A19H-06 11 72018283 72018283 G A CLPB Missense_Mutation p.A391V 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A19H-06 11 7818447 7818447 A G OR5P2 Missense_Mutation p.F15L 0.11 deleterious(0.03) probably_damaging(1) TCGA-ER-A19H-06 11 7846717 7846717 G A OR5P3 Missense_Mutation p.T268I 0.27 deleterious(0.04) benign(0.033) TCGA-ER-A19H-06 11 86267657 86267657 G A ME3 Silent p.I135I 0.31 TCGA-ER-A19H-06 11 92525958 92525958 G A FAT3 Missense_Mutation p.R1546Q 0.26 probably_damaging(0.989) TCGA-ER-A19H-06 12 103232874 103232874 C T PAH 3'UTR 0.56 TCGA-ER-A19H-06 12 111956184 111956184 G A ATXN2 Missense_Mutation p.S505F 0.52 possibly_damaging(0.66) TCGA-ER-A19H-06 12 120574381 120574381 G A GCN1L1 Silent p.I2311I 0.24 TCGA-ER-A19H-06 12 129442128 129442128 C T GLT1D1 Silent p.I193I 0.11 TCGA-ER-A19H-06 12 13906414 13906414 C T GRIN2B Missense_Mutation p.D283N 0.23 deleterious(0.02) probably_damaging(1) TCGA-ER-A19H-06 12 14976313 14976313 C T C12orf60 Silent p.I148I 0.20 TCGA-ER-A19H-06 12 18891837 18891837 G A CAPZA3 Missense_Mutation p.S212N 0.21 deleterious(0.02) possibly_damaging(0.609) TCGA-ER-A19H-06 12 20766445 20766445 C T PDE3A Silent p.L360L 0.21 TCGA-ER-A19H-06 12 2706447 2706447 G T CACNA1C Missense_Mutation p.A949S 0.16 tolerated_low_confidence(0.48) benign(0.006) TCGA-ER-A19H-06 12 27832573 27832573 G A PPFIBP1 Splice_Site p.X595_splice 0.19 TCGA-ER-A19H-06 12 49445377 49445377 G A KMT2D Missense_Mutation p.P697S 0.17 unknown(0) TCGA-ER-A19H-06 12 50037840 50037840 C A FMNL3 3'UTR 0.47 TCGA-ER-A19H-06 12 50037841 50037841 C T FMNL3 3'UTR 0.49 TCGA-ER-A19H-06 12 56090798 56090798 G A ITGA7 Missense_Mutation p.P545L 0.57 tolerated(0.05) probably_damaging(0.991) TCGA-ER-A19H-06 12 5708689 5708689 C T ANO2 Missense_Mutation p.E732K 0.38 deleterious(0.02) possibly_damaging(0.876) TCGA-ER-A19H-06 12 7187920 7187920 G T C1R Silent p.I626I 0.29 TCGA-ER-A19H-06 12 7639582 7639582 C T CD163 Missense_Mutation p.G684E 0.46 deleterious(0.02) probably_damaging(1) TCGA-ER-A19H-06 12 8386965 8386965 C T RP11-266K4.9 5'Flank 0.11 TCGA-ER-A19H-06 12 8386966 8386966 C T RP11-266K4.9 5'Flank 0.11 TCGA-ER-A19H-06 12 88420737 88420737 C T C12orf50 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-ER-A19H-06 12 9002864 9002864 C T A2ML1 Missense_Mutation p.P743L 0.23 deleterious(0) possibly_damaging(0.72) TCGA-ER-A19H-06 13 19751283 19751283 C T TUBA3C Silent p.K280K 0.58 TCGA-ER-A19H-06 13 25484175 25484175 T A CENPJ Silent p.G206G 0.66 TCGA-ER-A19H-06 13 32912842 32912842 T C BRCA2 Silent p.F1450F 0.66 TCGA-ER-A19H-06 14 103946816 103946816 C T MARK3 Silent p.G525G 0.73 TCGA-ER-A19H-06 14 105408500 105408500 C T AHNAK2 Missense_Mutation p.E4430K 0.76 possibly_damaging(0.699) TCGA-ER-A19H-06 14 26917366 26917366 C T NOVA1 Silent p.G441G 0.59 TCGA-ER-A19H-06 14 39721990 39721990 G A MIA2 Missense_Mutation p.E536K 0.54 tolerated(0.08) benign(0.039) TCGA-ER-A19H-06 14 64699862 64699862 G A ESR2 Missense_Mutation p.S529F 0.60 deleterious_low_confidence(0.01) benign(0.003) TCGA-ER-A19H-06 14 70634093 70634093 C T SLC8A3 Silent p.K349K 0.66 TCGA-ER-A19H-06 14 70713473 70713473 G A ADAM21P1 RNA 0.57 TCGA-ER-A19H-06 14 70926041 70926041 G A ADAM21 Missense_Mutation p.D609N 0.62 deleterious(0) possibly_damaging(0.907) TCGA-ER-A19H-06 14 73962038 73962038 C T HEATR4 Silent p.E893E 0.73 TCGA-ER-A19H-06 14 75377988 75377988 G A RPS6KL1 Silent p.S209S 0.37 TCGA-ER-A19H-06 14 94394883 94394883 C T FAM181A Silent p.G146G 0.55 TCGA-ER-A19H-06 14 95085667 95085667 C T SERPINA3 Missense_Mutation p.S260F 0.62 deleterious(0.05) benign(0.129) TCGA-ER-A19H-06 15 20496687 20496687 A G CHEK2P2 RNA 0.08 TCGA-ER-A19H-06 15 22332667 22332667 C T RP11-69H14.6 RNA 0.11 TCGA-ER-A19H-06 15 23441087 23441087 C T AC100757.1 5'Flank 0.12 TCGA-ER-A19H-06 15 28389360 28389360 T C HERC2 Missense_Mutation p.D3721G 0.44 probably_damaging(0.968) TCGA-ER-A19H-06 15 33840330 33840330 G A RYR3 Splice_Site p.X247_splice 0.24 TCGA-ER-A19H-06 15 40632145 40632145 G A C15orf52 Silent p.A72A 0.18 TCGA-ER-A19H-06 15 40657833 40657833 G A DISP2 Silent p.K284K 0.49 TCGA-ER-A19H-06 15 42171971 42171971 G A SPTBN5 Missense_Mutation p.S968F 0.47 benign(0.069) TCGA-ER-A19H-06 15 43585097 43585097 G A TGM7 Silent p.V83V 0.51 TCGA-ER-A19H-06 15 43826984 43826984 G A PPIP5K1 Missense_Mutation p.T1397I 0.31 deleterious_low_confidence(0.02) benign(0.005) TCGA-ER-A19H-06 15 50264878 50264878 C T ATP8B4 Missense_Mutation p.E382K 0.46 deleterious(0) benign(0.427) TCGA-ER-A19H-06 15 51758421 51758421 C T DMXL2 Missense_Mutation p.D2494N 0.15 tolerated(0.44) benign(0.35) TCGA-ER-A19H-06 15 57574794 57574794 C T TCF12 Intron 0.22 TCGA-ER-A19H-06 15 72190602 72190602 T C MYO9A Silent p.S1414S 0.54 TCGA-ER-A19H-06 15 83523433 83523433 G A HOMER2 Missense_Mutation p.S216F 0.29 tolerated(0.05) benign(0.002) TCGA-ER-A19H-06 15 89079585 89079585 G A DET1 5'UTR 0.25 TCGA-ER-A19H-06 15 90137730 90137730 G A TICRR Silent p.Q542Q 0.53 TCGA-ER-A19H-06 15 93528899 93528899 C T CHD2 Nonsense_Mutation p.R1137* 0.30 TCGA-ER-A19H-06 15 99251218 99251218 C T IGF1R Silent p.P174P 0.35 TCGA-ER-A19H-06 16 14397839 14397839 G A MIR193B RNA 0.41 TCGA-ER-A19H-06 16 22132863 22132863 G A VWA3A Silent p.L427L 0.46 TCGA-ER-A19H-06 16 31121091 31121091 C T BCKDK Missense_Mutation p.T121I 0.24 tolerated(0.22) possibly_damaging(0.56) TCGA-ER-A19H-06 16 31539946 31539946 C T AHSP Silent p.F81F 0.45 TCGA-ER-A19H-06 16 461434 461434 C T DECR2 Silent p.I245I 0.24 TCGA-ER-A19H-06 16 4934437 4934437 C T PPL Missense_Mutation p.E1407K 0.47 deleterious(0.01) possibly_damaging(0.786) TCGA-ER-A19H-06 16 58610468 58610468 G A CNOT1 Missense_Mutation p.R535C 0.23 deleterious(0) probably_damaging(0.935) TCGA-ER-A19H-06 16 70422379 70422379 G A ST3GAL2 Missense_Mutation p.P202S 0.13 probably_damaging(0.956) TCGA-ER-A19H-06 16 7382861 7382861 C A RBFOX1 5'UTR 0.39 TCGA-ER-A19H-06 16 85936542 85936542 C T IRF8 Intron 0.50 TCGA-ER-A19H-06 17 10404514 10404514 C T MYH1 Silent p.V1217V 0.44 TCGA-ER-A19H-06 17 10432765 10432765 G A MYH2 Missense_Mutation p.R1051C 0.23 deleterious(0.03) benign(0.032) TCGA-ER-A19H-06 17 11642241 11642241 C T DNAH9 Silent p.F1953F 0.23 TCGA-ER-A19H-06 17 12666495 12666495 C T MYOCD Missense_Mutation p.S832F 0.47 tolerated(0.07) possibly_damaging(0.789) TCGA-ER-A19H-06 17 1538457 1538457 C T SCARF1 Silent p.G696G 0.46 TCGA-ER-A19H-06 17 25937020 25937020 G A KSR1 Intron 0.50 TCGA-ER-A19H-06 17 27957801 27957801 T C SSH2 3'UTR 0.46 TCGA-ER-A19H-06 17 42194986 42194986 G A HDAC5 5'UTR 0.36 TCGA-ER-A19H-06 17 45886793 45886793 G A OSBPL7 Silent p.V644V 0.58 TCGA-ER-A19H-06 17 48540791 48540791 C T ACSF2 Silent p.P308P 0.27 TCGA-ER-A19H-06 17 5462137 5462137 G A NLRP1 Nonsense_Mutation p.Q627* 0.20 TCGA-ER-A19H-06 17 59924520 59924520 C T BRIP1 Missense_Mutation p.G190E 0.32 tolerated(0.31) benign(0.018) TCGA-ER-A19H-06 17 6513386 6513386 C T KIAA0753 Missense_Mutation p.R547Q 0.46 tolerated(1) benign(0.002) TCGA-ER-A19H-06 17 70644968 70644968 G A SLC39A11 Silent p.D308D 0.28 TCGA-ER-A19H-06 17 71335026 71335026 A C SDK2 Missense_Mutation p.F2073L 0.45 deleterious(0) probably_damaging(0.986) TCGA-ER-A19H-06 17 72667748 72667748 C T CTD-2006K23.2 3'Flank 0.40 TCGA-ER-A19H-06 17 73736931 73736931 C T ITGB4 Missense_Mutation p.R870W 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A19H-06 17 7401487 7401487 C T POLR2A Silent p.F431F 0.44 TCGA-ER-A19H-06 17 78184569 78184569 G A SGSH Silent p.P397P 0.27 TCGA-ER-A19H-06 17 78357707 78357710 CCTC ATT RNF213 Frame_Shift_Del p.L4768Ffs*11 0.44 TCGA-ER-A19H-06 17 78820279 78820279 C T RPTOR Missense_Mutation p.P407S 0.47 tolerated(0.2) benign(0.013) TCGA-ER-A19H-06 17 7909741 7909741 G A GUCY2D Missense_Mutation p.E363K 0.48 tolerated(0.85) benign(0.005) TCGA-ER-A19H-06 17 8526580 8526580 C T MYH10 5'UTR 0.32 TCGA-ER-A19H-06 18 12277224 12277224 G A CIDEA Silent p.R205R 0.62 TCGA-ER-A19H-06 18 67562970 67562970 C T CD226 Missense_Mutation p.E232K 0.65 tolerated(0.5) benign(0.343) TCGA-ER-A19H-06 19 11105632 11105632 G A SMARCA4 Silent p.K516K 0.38 TCGA-ER-A19H-06 19 13875469 13875469 A T MRI1 Nonsense_Mutation p.K23* 0.35 TCGA-ER-A19H-06 19 1466377 1466377 G A APC2 Missense_Mutation p.R1026Q 0.50 possibly_damaging(0.791) TCGA-ER-A19H-06 19 1507606 1507606 G A ADAMTSL5 Missense_Mutation p.P213L 0.72 deleterious(0) probably_damaging(0.998) TCGA-ER-A19H-06 19 15226020 15226020 T A ILVBL 3'UTR 0.57 TCGA-ER-A19H-06 19 15234284 15234284 G A ILVBL Missense_Mutation p.P80L 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 19 17476671 17476671 C T PLVAP Silent p.V201V 0.22 TCGA-ER-A19H-06 19 22941498 22941498 C T ZNF99 Missense_Mutation p.A405T 0.19 tolerated(0.17) probably_damaging(0.961) TCGA-ER-A19H-06 19 36054375 36054375 C T ATP4A Missense_Mutation p.A23T 0.21 tolerated(0.67) benign(0.007) TCGA-ER-A19H-06 19 39062686 39062686 G A RYR1 Missense_Mutation p.D4592N 0.35 unknown(0) TCGA-ER-A19H-06 19 39591436 39591436 C T PAPL Silent p.L250L 0.21 TCGA-ER-A19H-06 19 43772101 43772101 T - PSG9 Frame_Shift_Del p.I89Lfs*20 0.28 TCGA-ER-A19H-06 19 45262001 45262001 G T BCL3 Silent p.G360G 0.27 TCGA-ER-A19H-06 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.59 TCGA-ER-A19H-06 19 51330151 51330151 C T KLK15 Missense_Mutation p.G155E 0.71 tolerated(0.14) benign(0.269) TCGA-ER-A19H-06 19 51361337 51361337 G A KLK3 Missense_Mutation p.G87S 0.81 tolerated(0.1) benign(0.303) TCGA-ER-A19H-06 19 54080355 54080355 C T ZNF331 Missense_Mutation p.H181Y 0.72 deleterious(0) probably_damaging(0.964) TCGA-ER-A19H-06 19 9074625 9074625 G A MUC16 Missense_Mutation p.P4274L 0.61 unknown(0) TCGA-ER-A19H-06 1 10719965 10719965 G A CASZ1 Silent p.V378V 0.25 TCGA-ER-A19H-06 1 109650604 109650604 C T C1orf194 Missense_Mutation p.R34Q 0.20 deleterious(0) probably_damaging(0.954) TCGA-ER-A19H-06 1 110086463 110086463 G A GPR61 Silent p.Q273Q 0.55 TCGA-ER-A19H-06 1 111957780 111957780 C T OVGP1 Missense_Mutation p.G448D 0.57 tolerated(0.13) benign(0.02) TCGA-ER-A19H-06 1 117146260 117146260 G A IGSF3 Missense_Mutation p.S557F 0.40 deleterious(0) possibly_damaging(0.474) TCGA-ER-A19H-06 1 118534050 118534050 G T SPAG17 Silent p.L1821L 0.45 TCGA-ER-A19H-06 1 118537036 118537036 G A SPAG17 Missense_Mutation p.S1724L 0.29 deleterious(0) benign(0.363) TCGA-ER-A19H-06 1 118658037 118658037 C T SPAG17 Missense_Mutation p.D115N 0.37 deleterious(0.01) probably_damaging(0.928) TCGA-ER-A19H-06 1 12855635 12855635 A G PRAMEF1 Silent p.L305L 0.15 TCGA-ER-A19H-06 1 144877260 144877260 G A PDE4DIP Missense_Mutation p.S1476F 0.16 deleterious(0) probably_damaging(0.986) TCGA-ER-A19H-06 1 150900198 150900198 C T SETDB1 Missense_Mutation p.S3F 0.36 deleterious_low_confidence(0) benign(0.229) TCGA-ER-A19H-06 1 155330170 155330170 G A ASH1L Silent p.L2239L 0.37 TCGA-ER-A19H-06 1 156109043 156109043 C G LMNA 3'UTR 0.48 TCGA-ER-A19H-06 1 15752398 15752398 C T EFHD2 Silent p.L114L 0.21 TCGA-ER-A19H-06 1 158154053 158154053 G A CD1D 3'UTR 0.26 TCGA-ER-A19H-06 1 158263023 158263023 G A CD1C Nonsense_Mutation p.W304* 0.38 TCGA-ER-A19H-06 1 158517880 158517880 G A OR6Y1 Silent p.L6L 0.44 TCGA-ER-A19H-06 1 160582293 160582293 G A SLAMF1 Silent p.V314V 0.42 TCGA-ER-A19H-06 1 16721553 16721553 C T SZRD1 Missense_Mutation p.P126L 0.26 tolerated(0.07) benign(0.192) TCGA-ER-A19H-06 1 16721554 16721554 C T SZRD1 Silent p.P126P 0.27 TCGA-ER-A19H-06 1 167814888 167814888 G A ADCY10 Missense_Mutation p.P974S 0.40 tolerated(0.23) possibly_damaging(0.463) TCGA-ER-A19H-06 1 172558496 172558496 C T SUCO Missense_Mutation p.S752F 0.48 deleterious(0) benign(0.14) TCGA-ER-A19H-06 1 17327006 17327006 G A ATP13A2 Silent p.F243F 0.46 TCGA-ER-A19H-06 1 176526135 176526135 C T PAPPA2 Missense_Mutation p.S226F 0.45 tolerated_low_confidence(0.22) benign(0.087) TCGA-ER-A19H-06 1 176679243 176679243 G A PAPPA2 Silent p.R1194R 0.44 TCGA-ER-A19H-06 1 176762786 176762786 T G PAPPA2 Missense_Mutation p.M1704R 0.22 tolerated(0.17) probably_damaging(0.925) TCGA-ER-A19H-06 1 18808853 18808853 G A KLHDC7A Missense_Mutation p.E460K 0.43 deleterious(0) benign(0.058) TCGA-ER-A19H-06 1 190195377 190195377 T C BRINP3 Missense_Mutation p.N266D 0.30 tolerated(0.26) probably_damaging(0.985) TCGA-ER-A19H-06 1 196715099 196715099 G A CFH Missense_Mutation p.G1155R 0.21 deleterious(0) probably_damaging(0.997) TCGA-ER-A19H-06 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.24 tolerated(0.27) possibly_damaging(0.788) TCGA-ER-A19H-06 1 205886434 205886434 G A SLC26A9 Missense_Mutation p.R769C 0.27 tolerated_low_confidence(0.08) benign(0.015) TCGA-ER-A19H-06 1 207240856 207240856 C T PFKFB2 Silent p.F215F 0.42 TCGA-ER-A19H-06 1 210414925 210414925 G A SERTAD4 Missense_Mutation p.R105Q 0.41 deleterious(0) probably_damaging(0.994) TCGA-ER-A19H-06 1 211842553 211842553 G A NEK2 Missense_Mutation p.S296L 0.29 tolerated(0.71) benign(0) TCGA-ER-A19H-06 1 211842669 211842669 G A NEK2 Silent p.Y257Y 0.51 TCGA-ER-A19H-06 1 216040470 216040470 C T USH2A Silent p.V2908V 0.19 TCGA-ER-A19H-06 1 234041332 234041332 G A SLC35F3 Silent p.Q37Q 0.57 TCGA-ER-A19H-06 1 236995338 236995338 C T MTR Missense_Mutation p.S383L 0.41 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 1 24022389 24022389 C T RPL11 Silent p.F166F 0.44 TCGA-ER-A19H-06 1 247694758 247694758 T A OR2C3 3'UTR 0.47 TCGA-ER-A19H-06 1 26689589 26689589 C T ZNF683 Silent p.K357K 0.18 TCGA-ER-A19H-06 1 27097779 27097779 C T ARID1A Missense_Mutation p.S1123F 0.21 unknown(0) TCGA-ER-A19H-06 1 31437599 31437599 G A PUM1 Missense_Mutation p.P749S 0.49 tolerated(0.1) benign(0.168) TCGA-ER-A19H-06 1 36360862 36360862 C T AGO1 Missense_Mutation p.P338S 0.52 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 1 42049977 42049977 G A HIVEP3 Silent p.F164F 0.24 TCGA-ER-A19H-06 1 43812205 43812205 G A MPL Missense_Mutation p.R357Q 0.21 tolerated(0.46) benign(0.007) TCGA-ER-A19H-06 1 44072625 44072625 C T PTPRF Silent p.I1281I 0.21 TCGA-ER-A19H-06 1 45294871 45294871 G A PTCH2 Silent p.L443L 0.43 TCGA-ER-A19H-06 1 57159492 57159492 C T PRKAA2 Missense_Mutation p.P177L 0.41 deleterious(0.02) probably_damaging(0.92) TCGA-ER-A19H-06 1 64059224 64059224 T C PGM1 Missense_Mutation p.L22P 0.19 deleterious(0) probably_damaging(0.999) TCGA-ER-A19H-06 1 7863183 7863183 C T PER3 Missense_Mutation p.R316C 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-ER-A19H-06 1 84383305 84383305 G A TTLL7 Silent p.T523T 0.30 TCGA-ER-A19H-06 1 97981290 97981290 G A DPYD Missense_Mutation p.L578F 0.37 deleterious(0) possibly_damaging(0.764) TCGA-ER-A19H-06 20 20037347 20037347 G A C20orf26 Missense_Mutation p.R17Q 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 20 25459788 25459788 T C NINL Missense_Mutation p.R658G 0.22 deleterious(0) possibly_damaging(0.889) TCGA-ER-A19H-06 20 29847382 29847382 G A DEFB115 Missense_Mutation p.D72N 0.25 tolerated(0.33) benign(0.026) TCGA-ER-A19H-06 20 30418840 30418840 G A MYLK2 Silent p.K440K 0.21 TCGA-ER-A19H-06 20 34785922 34785922 G A EPB41L1 Missense_Mutation p.A543T 0.48 tolerated(0.09) benign(0.403) TCGA-ER-A19H-06 20 42744480 42744480 G A JPH2 Missense_Mutation p.P612L 0.67 deleterious(0.04) benign(0) TCGA-ER-A19H-06 20 62871117 62871117 C T MYT1 Missense_Mutation p.S1033F 0.60 possibly_damaging(0.781) TCGA-ER-A19H-06 21 11026826 11026826 C T BAGE2 RNA 0.12 TCGA-ER-A19H-06 21 15537607 15537607 C T LIPI Missense_Mutation p.D301N 0.43 tolerated(0.07) benign(0.222) TCGA-ER-A19H-06 21 15872983 15872983 C T SAMSN1 Missense_Mutation p.G280E 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 21 38126705 38126705 G A HLCS Missense_Mutation p.H675Y 0.26 deleterious(0) benign(0.173) TCGA-ER-A19H-06 21 41711158 41711158 C A DSCAM Silent p.V465V 0.24 TCGA-ER-A19H-06 22 16256527 16256527 C T POTEH 3'UTR 0.15 TCGA-ER-A19H-06 22 22040799 22040799 G A PPIL2 Missense_Mutation p.A248T 0.65 deleterious(0.03) probably_damaging(0.93) TCGA-ER-A19H-06 22 37771217 37771217 C T ELFN2 Missense_Mutation p.E120K 0.57 deleterious(0.01) probably_damaging(1) TCGA-ER-A19H-06 22 50756380 50756380 G A DENND6B Missense_Mutation p.A110V 0.55 tolerated(0.24) benign(0.001) TCGA-ER-A19H-06 2 108488632 108488632 A G RGPD4 Missense_Mutation p.K1391R 0.32 tolerated(0.17) possibly_damaging(0.557) TCGA-ER-A19H-06 2 110935991 110935991 G A NPHP1 Intron 0.36 TCGA-ER-A19H-06 2 131487495 131487495 C T GPR148 Silent p.S257S 0.33 TCGA-ER-A19H-06 2 141108424 141108424 C T LRP1B Missense_Mutation p.G3945E 0.27 probably_damaging(0.931) TCGA-ER-A19H-06 2 141108425 141108425 C T LRP1B Missense_Mutation p.G3945R 0.46 probably_damaging(0.956) TCGA-ER-A19H-06 2 141751606 141751606 C T LRP1B Missense_Mutation p.D868N 0.35 probably_damaging(0.962) TCGA-ER-A19H-06 2 149543949 149543949 T C EPC2 3'UTR 0.31 TCGA-ER-A19H-06 2 159028745 159028745 G A CCDC148 Silent p.F552F 0.39 TCGA-ER-A19H-06 2 161056576 161056576 C T ITGB6 5'UTR 0.29 TCGA-ER-A19H-06 2 168101760 168101760 G A XIRP2 Silent p.E1286E 0.38 TCGA-ER-A19H-06 2 179495873 179495873 C A TTN Missense_Mutation p.K14634N 0.23 TCGA-ER-A19H-06 2 179581844 179581844 A G TTN Silent p.C8539C 0.20 TCGA-ER-A19H-06 2 179598575 179598575 C T TTN Missense_Mutation p.G5181R 0.28 TCGA-ER-A19H-06 2 179606177 179606177 G A TTN Missense_Mutation p.S3928F 0.53 TCGA-ER-A19H-06 2 185802483 185802483 G A ZNF804A Missense_Mutation p.R787Q 0.47 tolerated(0.66) benign(0) TCGA-ER-A19H-06 2 189855034 189855034 G A COL3A1 Missense_Mutation p.G249D 0.44 unknown(0) TCGA-ER-A19H-06 2 19552065 19552065 C T OSR1 Missense_Mutation p.E258K 0.34 tolerated(0.14) benign(0.003) TCGA-ER-A19H-06 2 211302499 211302499 G A LANCL1 Missense_Mutation p.P263L 0.48 deleterious(0.02) probably_damaging(0.966) TCGA-ER-A19H-06 2 21229057 21229057 G A APOB Silent p.S3561S 0.41 TCGA-ER-A19H-06 2 216245549 216245549 C T FN1 Missense_Mutation p.G1807R 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A19H-06 2 225781460 225781460 T A DOCK10 Silent p.T95T 0.36 TCGA-ER-A19H-06 2 226447505 226447505 G A NYAP2 Missense_Mutation p.D458N 0.36 tolerated(0.12) possibly_damaging(0.767) TCGA-ER-A19H-06 2 230456304 230456304 G A DNER Nonsense_Mutation p.Q193* 0.12 TCGA-ER-A19H-06 2 239040160 239040160 G A ESPNL Nonsense_Mutation p.W935* 0.48 TCGA-ER-A19H-06 2 31215711 31215711 G A GALNT14 Intron 0.46 TCGA-ER-A19H-06 2 40656570 40656570 G A SLC8A1 Missense_Mutation p.S284F 0.31 tolerated(0.19) benign(0.035) TCGA-ER-A19H-06 2 54080278 54080278 G A GPR75 Missense_Mutation p.S539F 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19H-06 2 55445100 55445100 A G CLHC1 Missense_Mutation p.L71P 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-ER-A19H-06 2 61724052 61724052 C A XPO1 Missense_Mutation p.V284L 0.21 tolerated(0.1) benign(0.003) TCGA-ER-A19H-06 2 71839847 71839847 C T DYSF Missense_Mutation p.P1433L 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A19H-06 2 74689941 74689941 G A MOGS Silent p.T325T 0.31 TCGA-ER-A19H-06 2 75101035 75101035 A T HK2 Missense_Mutation p.Y219F 0.15 tolerated(0.46) benign(0.018) TCGA-ER-A19H-06 2 9008601 9008601 G A MBOAT2 Missense_Mutation p.S321F 0.29 deleterious(0) probably_damaging(0.988) TCGA-ER-A19H-06 3 119458134 119458134 C T MAATS1 Silent p.Y498Y 0.66 TCGA-ER-A19H-06 3 142144276 142144276 G T XRN1 Missense_Mutation p.H171N 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-ER-A19H-06 3 16450885 16450885 C T RFTN1 Silent p.K146K 0.62 TCGA-ER-A19H-06 3 164785148 164785148 C T SI Silent p.R205R 0.56 TCGA-ER-A19H-06 3 167245747 167245747 G A WDR49 Missense_Mutation p.S470L 0.62 deleterious(0.01) possibly_damaging(0.737) TCGA-ER-A19H-06 3 189692379 189692379 C T LEPREL1 Missense_Mutation p.E474K 0.54 tolerated(0.11) benign(0.133) TCGA-ER-A19H-06 3 193023397 193023397 G A ATP13A5 Missense_Mutation p.P877S 0.68 deleterious(0) possibly_damaging(0.611) TCGA-ER-A19H-06 3 195395415 195395415 C T SDHAP2 RNA 0.28 TCGA-ER-A19H-06 3 2908472 2908472 C T CNTN4 Missense_Mutation p.S164F 0.53 tolerated(0.36) benign(0.179) TCGA-ER-A19H-06 3 4355398 4355398 G A SETMAR Missense_Mutation p.G325S 0.62 deleterious_low_confidence(0.03) benign(0.096) TCGA-ER-A19H-06 3 4355399 4355399 G A SETMAR Missense_Mutation p.G325D 0.63 deleterious_low_confidence(0.01) benign(0.053) TCGA-ER-A19H-06 3 49692305 49692305 C T BSN Silent p.A1772A 0.65 TCGA-ER-A19H-06 3 52097286 52097286 C T LINC00696 Nonsense_Mutation p.W94* 0.68 TCGA-ER-A19H-06 3 52097287 52097287 C T LINC00696 Nonsense_Mutation p.W94* 0.69 TCGA-ER-A19H-06 4 125593328 125593328 T A ANKRD50 Missense_Mutation p.E368D 0.23 tolerated(0.24) possibly_damaging(0.655) TCGA-ER-A19H-06 4 144940433 144940433 C T GYPB Missense_Mutation p.G3E 0.11 tolerated_low_confidence(0.13) probably_damaging(0.972) TCGA-ER-A19H-06 4 144940434 144940434 C T GYPB Missense_Mutation p.G3R 0.11 tolerated_low_confidence(0.15) probably_damaging(0.979) TCGA-ER-A19H-06 4 158256979 158256979 G A GRIA2 Missense_Mutation p.D475N 0.88 tolerated(0.35) probably_damaging(0.999) TCGA-ER-A19H-06 4 158281187 158281187 C T GRIA2 Missense_Mutation p.T728M 0.16 deleterious(0) probably_damaging(0.994) TCGA-ER-A19H-06 4 165962309 165962309 G A TRIM60 Nonsense_Mutation p.W362* 0.54 TCGA-ER-A19H-06 4 169393926 169393926 C T DDX60L 5'UTR 0.62 TCGA-ER-A19H-06 4 183696080 183696080 G A TENM3 Missense_Mutation p.R1693K 0.18 tolerated(0.17) benign(0.364) TCGA-ER-A19H-06 4 89627995 89627995 C T HERC3 Missense_Mutation p.P1013S 0.72 deleterious(0) probably_damaging(0.999) TCGA-ER-A19H-06 4 94411794 94411794 G A GRID2 Silent p.G621G 0.24 TCGA-ER-A19H-06 5 133914319 133914319 C T JADE2 Missense_Mutation p.P562L 0.33 deleterious(0.04) benign(0.021) TCGA-ER-A19H-06 5 140774328 140774328 G A PCDHGA8 Missense_Mutation p.G650S 0.71 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A19H-06 5 14304643 14304643 A G TRIO Missense_Mutation p.E481G 0.23 probably_damaging(0.937) TCGA-ER-A19H-06 5 158250325 158250325 C T EBF1 Missense_Mutation p.V213I 0.88 deleterious(0.02) possibly_damaging(0.761) TCGA-ER-A19H-06 5 158250326 158250326 C T EBF1 Splice_Site p.X213_splice 0.88 TCGA-ER-A19H-06 5 171471796 171471796 G A STK10 3'UTR 0.55 TCGA-ER-A19H-06 5 176939793 176939793 G A DDX41 Missense_Mutation p.H463Y 0.62 deleterious(0) probably_damaging(0.965) TCGA-ER-A19H-06 5 23527498 23527498 G A PRDM9 Silent p.Q767Q 0.53 TCGA-ER-A19H-06 5 32126181 32126181 A G GOLPH3 3'UTR 0.48 TCGA-ER-A19H-06 5 35065986 35065986 G A PRLR Silent p.S358S 0.48 TCGA-ER-A19H-06 5 5209251 5209251 G A ADAMTS16 Silent p.K499K 0.28 TCGA-ER-A19H-06 5 73166004 73166004 G A ARHGEF28 Missense_Mutation p.D846N 0.69 tolerated(0.15) benign(0.104) TCGA-ER-A19H-06 5 82948468 82948468 C T HAPLN1 Silent p.V92V 0.48 TCGA-ER-A19H-06 6 100841546 100841546 G A SIM1 Missense_Mutation p.H463Y 0.44 tolerated_low_confidence(0.16) possibly_damaging(0.686) TCGA-ER-A19H-06 6 117244339 117244339 G A RFX6 Missense_Mutation p.G503S 0.32 deleterious(0.04) probably_damaging(0.934) TCGA-ER-A19H-06 6 121560300 121560300 G C TBC1D32 Silent p.S760S 0.29 TCGA-ER-A19H-06 6 123122545 123122545 A G SMPDL3A Missense_Mutation p.R188G 0.28 deleterious(0) possibly_damaging(0.785) TCGA-ER-A19H-06 6 124604253 124604253 G A NKAIN2 Missense_Mutation p.G53R 0.32 deleterious(0.01) probably_damaging(1) TCGA-ER-A19H-06 6 128403618 128403618 G A PTPRK Missense_Mutation p.P581S 0.29 tolerated(0.1) benign(0.069) TCGA-ER-A19H-06 6 129637213 129637213 C T LAMA2 Nonsense_Mutation p.R1319* 0.53 TCGA-ER-A19H-06 6 13592077 13592077 C T SIRT5 Silent p.I142I 0.48 TCGA-ER-A19H-06 6 152847286 152847286 C T SYNE1 Missense_Mutation p.D52N 0.33 possibly_damaging(0.771) TCGA-ER-A19H-06 6 155451067 155451067 C T TIAM2 Missense_Mutation p.S237F 0.38 deleterious(0) probably_damaging(0.984) TCGA-ER-A19H-06 6 155451084 155451084 C T TIAM2 Silent p.L243L 0.33 TCGA-ER-A19H-06 6 24460549 24460549 A G GPLD1 Silent p.Y322Y 0.50 TCGA-ER-A19H-06 6 24460550 24460550 T C GPLD1 Missense_Mutation p.Y322C 0.48 tolerated(0.12) possibly_damaging(0.695) TCGA-ER-A19H-06 6 24582535 24582535 G A KIAA0319 Missense_Mutation p.P378L 0.40 deleterious(0.01) probably_damaging(1) TCGA-ER-A19H-06 6 26508792 26508792 C T BTN1A1 Missense_Mutation p.S324F 0.20 deleterious(0) probably_damaging(0.997) TCGA-ER-A19H-06 6 29141331 29141331 C T OR2J2 5'UTR 0.43 TCGA-ER-A19H-06 6 30131816 30131816 C T TRIM15 Silent p.L119L 0.28 TCGA-ER-A19H-06 6 31504375 31504375 G A DDX39B Missense_Mutation p.P173L 0.29 deleterious(0.02) possibly_damaging(0.877) TCGA-ER-A19H-06 6 31612752 31612752 G A BAG6 Missense_Mutation p.P453L 0.25 deleterious(0) probably_damaging(0.994) TCGA-ER-A19H-06 6 32065092 32065092 G A TNXB Missense_Mutation p.P180S 0.54 benign(0.007) TCGA-ER-A19H-06 6 38862526 38862526 G A DNAH8 Missense_Mutation p.R2661Q 0.47 probably_damaging(1) TCGA-ER-A19H-06 6 38867567 38867567 C T DNAH8 Nonsense_Mutation p.R2810* 0.27 TCGA-ER-A19H-06 6 41704716 41704716 G A PGC Silent p.V347V 0.23 TCGA-ER-A19H-06 6 46684775 46684775 G A PLA2G7 Silent p.I56I 0.24 TCGA-ER-A19H-06 6 55381350 55381350 G A HMGCLL1 Missense_Mutation p.R147C 0.46 tolerated(0.06) benign(0.022) TCGA-ER-A19H-06 6 55990387 55990387 G A COL21A1 Missense_Mutation p.S543L 0.34 tolerated(0.41) benign(0.004) TCGA-ER-A19H-06 6 57013018 57013018 C T ZNF451 Missense_Mutation p.P712L 0.78 tolerated(0.49) benign(0.15) TCGA-ER-A19H-06 6 69348628 69348628 G A BAI3 Missense_Mutation p.G21R 0.50 deleterious(0) probably_damaging(0.996) TCGA-ER-A19H-06 6 70983758 70983758 C T COL9A1 Missense_Mutation p.G353R 0.46 probably_damaging(1) TCGA-ER-A19H-06 6 74072881 74072881 G A KHDC3L Missense_Mutation p.R78Q 0.50 tolerated(1) benign(0.005) TCGA-ER-A19H-06 6 88125461 88125461 G A C6ORF165 Missense_Mutation p.R114Q 0.60 deleterious(0.01) benign(0.069) TCGA-ER-A19H-06 6 96651903 96651903 A T FUT9 Missense_Mutation p.D291V 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A19H-06 6 97246954 97246954 G A GPR63 Silent p.P218P 0.49 TCGA-ER-A19H-06 7 100085944 100085944 C T NYAP1 Silent p.S200S 0.81 TCGA-ER-A19H-06 7 100674925 100674925 C T MUC17 Silent p.V76V 0.70 TCGA-ER-A19H-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.81 deleterious(0) probably_damaging(0.967) TCGA-ER-A19H-06 7 150417712 150417712 T A GIMAP1 Missense_Mutation p.M207K 0.27 deleterious(0.04) benign(0.004) TCGA-ER-A19H-06 7 150417713 150417713 G T GIMAP1 Missense_Mutation p.M207I 0.32 tolerated(0.08) benign(0.007) TCGA-ER-A19H-06 7 156469010 156469010 G A RNF32 Intron 0.55 TCGA-ER-A19H-06 7 2275011 2275011 G A FTSJ2 Missense_Mutation p.R163W 0.31 deleterious(0) probably_damaging(0.99) TCGA-ER-A19H-06 7 4152976 4152976 C A SDK1 Silent p.R1164R 0.20 TCGA-ER-A19H-06 7 53103527 53103527 C A POM121L12 Missense_Mutation p.L55M 0.45 tolerated(0.1) benign(0.001) TCGA-ER-A19H-06 7 72892240 72892240 T A BAZ1B Missense_Mutation p.E517D 0.35 tolerated(0.36) benign(0.015) TCGA-ER-A19H-06 7 73521416 73521416 C T LIMK1 Missense_Mutation p.R320C 0.38 deleterious(0) probably_damaging(0.993) TCGA-ER-A19H-06 7 77402515 77402515 C T RSBN1L Silent p.P559P 0.45 TCGA-ER-A19H-06 7 80418633 80418633 A T SEMA3C Missense_Mutation p.F448Y 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-ER-A19H-06 7 81392179 81392179 C T HGF Missense_Mutation p.R33K 0.25 tolerated(1) benign(0) TCGA-ER-A19H-06 7 82584652 82584652 T C PCLO Missense_Mutation p.S1873G 0.44 unknown(0) TCGA-ER-A19H-06 7 82585079 82585079 G A PCLO Silent p.S1730S 0.43 TCGA-ER-A19H-06 7 82585080 82585080 G A PCLO Missense_Mutation p.S1730F 0.44 unknown(0) TCGA-ER-A19H-06 7 83119496 83119496 G A SEMA3E Silent p.L70L 0.26 TCGA-ER-A19H-06 8 114326902 114326902 C T CSMD3 Missense_Mutation p.R100Q 0.37 tolerated(0.46) benign(0.348) TCGA-ER-A19H-06 8 117778754 117778754 G A UTP23 5'UTR 0.35 TCGA-ER-A19H-06 8 117778755 117778755 G A UTP23 5'UTR 0.39 TCGA-ER-A19H-06 8 139791793 139791793 C T COL22A1 Missense_Mutation p.E555K 0.23 unknown(0) TCGA-ER-A19H-06 8 18541318 18541318 G A PSD3 Intron 0.42 TCGA-ER-A19H-06 8 24261580 24261580 G A ADAMDEC1 Missense_Mutation p.G462E 0.36 tolerated(0.48) benign(0.011) TCGA-ER-A19H-06 8 24773115 24773115 C T NEFM Intron 0.37 TCGA-ER-A19H-06 8 2818684 2818684 C T CSMD1 Silent p.Q3227Q 0.40 TCGA-ER-A19H-06 8 68965372 68965372 G A PREX2 Nonsense_Mutation p.W328* 0.40 TCGA-ER-A19H-06 8 69129884 69129884 C T PREX2 Silent p.I1546I 0.30 TCGA-ER-A19H-06 8 79510635 79510635 A G PKIA Missense_Mutation p.T6A 0.27 tolerated(0.66) benign(0.16) TCGA-ER-A19H-06 8 86389385 86389385 G C CA2 Missense_Mutation p.G182R 0.35 tolerated(0.06) possibly_damaging(0.46) TCGA-ER-A19H-06 8 88885171 88885171 G A DCAF4L2 Silent p.L343L 0.37 TCGA-ER-A19H-06 8 92364076 92364076 C T SLC26A7 Silent p.V393V 0.41 TCGA-ER-A19H-06 8 95718322 95718322 C T ESRP1 3'UTR 0.47 TCGA-ER-A19H-06 8 95718323 95718323 C T ESRP1 3'UTR 0.47 TCGA-ER-A19H-06 9 113238484 113238484 C T SVEP1 Missense_Mutation p.G867R 0.55 probably_damaging(0.996) TCGA-ER-A19H-06 9 117118331 117118331 G A AKNA Missense_Mutation p.P978S 0.50 tolerated(0.15) benign(0.048) TCGA-ER-A19H-06 9 125748616 125748616 A G RABGAP1 Missense_Mutation p.M170V 0.68 tolerated(0.93) possibly_damaging(0.685) TCGA-ER-A19H-06 9 128201059 128201059 G A MAPKAP1 3'UTR 0.73 TCGA-ER-A19H-06 9 21968242 21968242 C T CDKN2A Splice_Site 0.60 TCGA-ER-A19H-06 9 26842533 26842533 G A CAAP1 Silent p.V284V 0.53 TCGA-ER-A19H-06 9 35689769 35689769 C T TPM2 Missense_Mutation p.E16K 0.56 deleterious(0.03) benign(0.064) TCGA-ER-A19H-06 9 38396134 38396134 C T ALDH1B1 Missense_Mutation p.P130L 0.67 tolerated(0.1) probably_damaging(0.925) TCGA-ER-A19H-06 X 100615121 100615121 G A BTK Missense_Mutation p.P265L 0.78 deleterious(0.01) possibly_damaging(0.873) TCGA-ER-A19H-06 X 114871204 114871204 C T PLS3 Missense_Mutation p.P269S 0.86 deleterious(0) probably_damaging(0.914) TCGA-ER-A19H-06 X 115590071 115590071 G A SLC6A14 Missense_Mutation p.E627K 0.69 tolerated(0.45) benign(0.003) TCGA-ER-A19H-06 X 140953391 140953391 G A MAGEC3 Silent p.K86K 0.65 TCGA-ER-A19H-06 X 150345183 150345183 C A GPR50 5'UTR 0.80 TCGA-ER-A19H-06 X 3227970 3227970 C T MXRA5 Missense_Mutation p.M2758I 0.83 tolerated(1) benign(0.015) TCGA-ER-A19H-06 X 76709692 76709692 C T FGF16 Missense_Mutation p.R16W 0.80 probably_damaging(0.997) TCGA-ER-A19H-06 X 83319402 83319402 C T RPS6KA6 Missense_Mutation p.M707I 0.94 tolerated(0.07) benign(0.004) TCGA-ER-A19H-06 X 84561241 84561241 T C POF1B Silent p.E421E 0.82 TCGA-ER-A19J-06 10 103825888 103825888 G A HPS6 Nonsense_Mutation p.W219* 0.82 TCGA-ER-A19J-06 10 104459233 104459233 T C ARL3 Missense_Mutation p.K54R 0.74 deleterious(0.02) probably_damaging(0.952) TCGA-ER-A19J-06 10 134219302 134219302 C T PWWP2B Missense_Mutation p.S433L 0.88 deleterious(0.01) benign(0.09) TCGA-ER-A19J-06 10 25885644 25885644 C T GPR158 Nonsense_Mutation p.R691* 0.83 TCGA-ER-A19J-06 10 28409223 28409223 G A MPP7 Nonsense_Mutation p.Q263* 0.73 TCGA-ER-A19J-06 10 50724338 50724338 G A ERCC6-PGBD3 Missense_Mutation p.P743S 0.79 tolerated_low_confidence(0.09) unknown(0) TCGA-ER-A19J-06 10 69966583 69966583 C T MYPN Missense_Mutation p.S1239L 0.89 deleterious(0.03) benign(0.152) TCGA-ER-A19J-06 10 73512752 73512752 C T C10orf54 Silent p.Q228Q 0.55 TCGA-ER-A19J-06 10 74769646 74769646 A G P4HA1 Missense_Mutation p.W485R 0.91 deleterious(0) probably_damaging(0.988) TCGA-ER-A19J-06 10 79741291 79741291 G A POLR3A Silent p.A1262A 0.85 TCGA-ER-A19J-06 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.47 TCGA-ER-A19J-06 10 95360166 95360166 G A RBP4 Silent p.S113S 0.91 TCGA-ER-A19J-06 11 100912815 100912815 C T PGR Missense_Mutation p.R836Q 0.47 deleterious(0.01) benign(0.105) TCGA-ER-A19J-06 11 100922294 100922294 G A PGR Nonsense_Mutation p.R740* 0.35 TCGA-ER-A19J-06 11 101375472 101375472 C T TRPC6 Silent p.G76G 0.35 TCGA-ER-A19J-06 11 10546787 10546787 T C RNF141 Missense_Mutation p.E129G 0.42 tolerated(0.36) benign(0) TCGA-ER-A19J-06 11 113295250 113295250 T G DRD2 Missense_Mutation p.T42P 0.43 tolerated(0.07) possibly_damaging(0.707) TCGA-ER-A19J-06 11 114183152 114183152 G A NNMT Missense_Mutation p.E250K 0.36 tolerated(0.46) benign(0.007) TCGA-ER-A19J-06 11 120776100 120776100 C T GRIK4 Silent p.I458I 0.42 TCGA-ER-A19J-06 11 120983847 120983847 G A TECTA Missense_Mutation p.E185K 0.43 tolerated(0.08) benign(0.266) TCGA-ER-A19J-06 11 121495832 121495832 C T SORL1 Silent p.I2070I 0.31 TCGA-ER-A19J-06 11 124180566 124180566 C T OR8D1 Missense_Mutation p.G33R 0.34 deleterious(0.02) possibly_damaging(0.779) TCGA-ER-A19J-06 11 124180567 124180567 C T OR8D1 Silent p.L32L 0.34 TCGA-ER-A19J-06 11 124761259 124761259 C T ROBO4 Silent p.R628R 0.31 TCGA-ER-A19J-06 11 1261137 1261137 G A MUC5B Missense_Mutation p.G1231D 0.29 unknown(0) TCGA-ER-A19J-06 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.29 tolerated(0.12) probably_damaging(0.988) TCGA-ER-A19J-06 11 45274137 45274137 G A SYT13 Silent p.L227L 0.30 TCGA-ER-A19J-06 11 55110996 55110996 G A OR4A16 Missense_Mutation p.G107D 0.46 deleterious_low_confidence(0.01) benign(0.417) TCGA-ER-A19J-06 11 55658834 55658834 G A TRIM51 Nonsense_Mutation p.W362* 0.29 TCGA-ER-A19J-06 11 5968822 5968822 C T OR56A3 Silent p.I82I 0.33 TCGA-ER-A19J-06 11 65824824 65824824 C T SF3B2 Missense_Mutation p.P252L 0.50 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-ER-A19J-06 11 86161345 86161345 C T ME3 Missense_Mutation p.E339K 0.38 deleterious(0) probably_damaging(0.986) TCGA-ER-A19J-06 12 101880566 101880566 C T SPIC 3'UTR 0.33 TCGA-ER-A19J-06 12 102512251 102512251 C G NUP37 Missense_Mutation p.E16Q 0.44 tolerated(0.11) benign(0.028) TCGA-ER-A19J-06 12 108686389 108686389 G A CMKLR1 Silent p.F117F 0.32 TCGA-ER-A19J-06 12 10954752 10954752 G A TAS2R7 Missense_Mutation p.L140F 0.50 tolerated(0.24) benign(0.037) TCGA-ER-A19J-06 12 112940052 112940052 C T PTPN11 Silent p.P568P 0.33 TCGA-ER-A19J-06 12 11420962 11420962 C T PRB3 Missense_Mutation p.R74H 0.22 tolerated(0.15) unknown(0) TCGA-ER-A19J-06 12 121622599 121622599 T C P2RX7 Silent p.P594P 0.48 TCGA-ER-A19J-06 12 124323233 124323233 C T DNAH10 Silent p.I1593I 0.38 TCGA-ER-A19J-06 12 133195513 133195513 G A P2RX2 Silent p.R37R 0.31 TCGA-ER-A19J-06 12 13526044 13526044 G A C12orf36 3'UTR 0.36 TCGA-ER-A19J-06 12 21997416 21997416 C A ABCC9 Splice_Site p.X1105_splice 0.23 TCGA-ER-A19J-06 12 23687110 23687110 G A SOX5 3'UTR 0.59 TCGA-ER-A19J-06 12 47471383 47471383 A G AMIGO2 Missense_Mutation p.F468S 0.44 deleterious(0) probably_damaging(0.998) TCGA-ER-A19J-06 12 49951466 49951466 G A KCNH3 Nonsense_Mutation p.W994* 0.37 TCGA-ER-A19J-06 12 51847481 51847481 C T SLC4A8 Missense_Mutation p.S191L 0.40 tolerated(0.06) benign(0.119) TCGA-ER-A19J-06 12 69656228 69656228 C T CPSF6 Silent p.D515D 0.27 TCGA-ER-A19J-06 12 71526492 71526492 C T TSPAN8 Missense_Mutation p.G186E 0.35 tolerated(0.06) possibly_damaging(0.772) TCGA-ER-A19J-06 12 7531623 7531623 C T CD163L1 Nonsense_Mutation p.W774* 0.28 TCGA-ER-A19J-06 12 79689957 79689957 G C SYT1 Missense_Mutation p.E195Q 0.40 deleterious(0) possibly_damaging(0.844) TCGA-ER-A19J-06 12 81112667 81112667 C T MYF5 Missense_Mutation p.S202F 0.37 deleterious(0) probably_damaging(0.999) TCGA-ER-A19J-06 12 81627142 81627142 C T ACSS3 Silent p.T537T 0.31 TCGA-ER-A19J-06 12 89744592 89744593 - T DUSP6 Frame_Shift_Ins p.P204Hfs*45 0.19 TCGA-ER-A19J-06 12 91348040 91348040 C T CCER1 Silent p.R160R 0.42 TCGA-ER-A19J-06 12 91502198 91502198 C T LUM Missense_Mutation p.E187K 0.48 tolerated(0.12) benign(0.22) TCGA-ER-A19J-06 12 978199 978199 C T WNK1 Intron 0.23 TCGA-ER-A19J-06 13 111992268 111992268 C T TEX29 Silent p.T76T 0.36 TCGA-ER-A19J-06 13 25144813 25144813 G A RP11-556N21.1 RNA 0.43 TCGA-ER-A19J-06 13 44464257 44464257 C T LACC1 Silent p.L381L 0.50 TCGA-ER-A19J-06 13 52604668 52604668 C T UTP14C Silent p.P576P 0.28 TCGA-ER-A19J-06 14 101493512 101493512 C T MIR329-2 RNA 0.45 TCGA-ER-A19J-06 14 105410204 105410204 C T AHNAK2 Missense_Mutation p.V3862I 0.40 possibly_damaging(0.627) TCGA-ER-A19J-06 14 105410205 105410205 C T AHNAK2 Silent p.T3861T 0.41 TCGA-ER-A19J-06 14 19553803 19553803 G A POTEG Missense_Mutation p.M129I 0.07 tolerated(0.09) benign(0.001) TCGA-ER-A19J-06 14 19553804 19553804 G A POTEG Missense_Mutation p.E130K 0.07 deleterious(0.04) possibly_damaging(0.776) TCGA-ER-A19J-06 14 23240112 23240112 C T OXA1L Silent p.F371F 0.42 TCGA-ER-A19J-06 14 23634537 23634537 G A SLC7A8 Silent p.F155F 0.48 TCGA-ER-A19J-06 14 23900689 23900689 C T MYH7 Missense_Mutation p.G245E 0.45 deleterious(0) probably_damaging(0.998) TCGA-ER-A19J-06 14 24114377 24114377 G A DHRS2 Missense_Mutation p.E257K 0.48 tolerated(0.13) benign(0.248) TCGA-ER-A19J-06 14 24884610 24884610 T A NYNRIN Missense_Mutation p.F1219I 0.39 deleterious(0) probably_damaging(0.996) TCGA-ER-A19J-06 14 35497348 35497350 AAA - SRP54 In_Frame_Del p.Q461_M462delinsL 0.31 TCGA-ER-A19J-06 14 57268780 57268780 C T OTX2 Silent p.Q189Q 0.31 TCGA-ER-A19J-06 14 57741245 57741245 C T AP5M1 Missense_Mutation p.P120S 0.39 deleterious(0.01) probably_damaging(1) TCGA-ER-A19J-06 14 63246607 63246607 C T KCNH5 Missense_Mutation p.E620K 0.44 deleterious(0.03) possibly_damaging(0.871) TCGA-ER-A19J-06 14 63784435 63784435 G A GPHB5 RNA 0.38 TCGA-ER-A19J-06 14 71205045 71205045 C T MAP3K9 Silent p.E587E 0.40 TCGA-ER-A19J-06 14 77743702 77743702 G A POMT2 3'UTR 0.27 TCGA-ER-A19J-06 14 95932576 95932576 G C SYNE3 Missense_Mutation p.R107G 0.35 deleterious(0) probably_damaging(0.978) TCGA-ER-A19J-06 14 96953376 96953376 G A AK7 Missense_Mutation p.D706N 0.30 deleterious(0.01) probably_damaging(1) TCGA-ER-A19J-06 15 102346044 102346044 G A OR4F6 Missense_Mutation p.G41E 0.42 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-ER-A19J-06 15 24921209 24921209 C T NPAP1 Silent p.F65F 0.52 TCGA-ER-A19J-06 15 43820181 43820183 CTC - MAP1A In_Frame_Del p.S2172del 0.63 TCGA-ER-A19J-06 15 45396251 45396251 C T DUOX2 Missense_Mutation p.G854D 0.69 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 15 57820972 57820972 C T CGNL1 Missense_Mutation p.H1054Y 0.33 tolerated(0.05) benign(0.397) TCGA-ER-A19J-06 15 81214441 81214441 G A KIAA1199 Missense_Mutation p.G722E 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 16 19194877 19194877 C T SYT17 Missense_Mutation p.P120L 0.49 deleterious(0) probably_damaging(0.996) TCGA-ER-A19J-06 16 31927748 31927748 C T ZNF267 Silent p.N726N 0.45 TCGA-ER-A19J-06 16 4016876 4016876 G A ADCY9 Missense_Mutation p.L988F 0.25 deleterious(0) probably_damaging(0.979) TCGA-ER-A19J-06 16 46763045 46763045 C T MYLK3 Missense_Mutation p.E555K 0.45 deleterious(0) probably_damaging(0.964) TCGA-ER-A19J-06 16 50583352 50583352 C T NKD1 Silent p.S26S 0.10 TCGA-ER-A19J-06 16 51175273 51175273 G A SALL1 Missense_Mutation p.S287F 0.34 deleterious(0) probably_damaging(0.998) TCGA-ER-A19J-06 16 633720 633720 G T PIGQ 3'UTR 0.29 TCGA-ER-A19J-06 16 71408689 71408689 C T CALB2 Silent p.F71F 0.28 TCGA-ER-A19J-06 16 76481969 76481969 C T CNTNAP4 Missense_Mutation p.S175F 0.36 tolerated(0.37) benign(0.008) TCGA-ER-A19J-06 16 77331198 77331198 G A ADAMTS18 Missense_Mutation p.S930F 0.37 deleterious(0) benign(0.396) TCGA-ER-A19J-06 17 10441152 10441152 A G MYH2 Missense_Mutation p.F473L 0.38 tolerated(0.07) benign(0.01) TCGA-ER-A19J-06 17 15516962 15516962 G A RP11-385D13.1 Silent p.H632H 0.20 TCGA-ER-A19J-06 17 16722411 16722411 G A AC022596.6 RNA 0.15 TCGA-ER-A19J-06 17 19316290 19316290 C T RNF112 Missense_Mutation p.R141C 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A19J-06 17 21319578 21319578 G A KCNJ12 Missense_Mutation p.M308I 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-ER-A19J-06 17 27286792 27286792 C T SEZ6 Silent p.L565L 0.33 TCGA-ER-A19J-06 17 27493346 27493346 G A MYO18A Silent p.L205L 0.36 TCGA-ER-A19J-06 17 27844580 27844580 G C TAOK1 Missense_Mutation p.R605P 0.29 deleterious(0.02) possibly_damaging(0.681) TCGA-ER-A19J-06 17 39537367 39537367 C T KRT34 Missense_Mutation p.E219K 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 17 4725970 4725970 C T PLD2 Silent p.S871S 0.43 TCGA-ER-A19J-06 17 49713368 49713368 C T CA10 Missense_Mutation p.D213N 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19J-06 17 6703331 6703331 G A TEKT1 3'UTR 0.37 TCGA-ER-A19J-06 17 74388154 74388154 G A UBE2O Missense_Mutation p.P996L 0.46 deleterious(0) probably_damaging(0.999) TCGA-ER-A19J-06 17 9683179 9683179 C T DHRS7C Missense_Mutation p.M148I 0.40 deleterious(0) probably_damaging(0.999) TCGA-ER-A19J-06 17 9820593 9820593 G A GAS7 Silent p.V461V 0.49 TCGA-ER-A19J-06 18 30092797 30092797 C T WBP11P1 RNA 0.29 TCGA-ER-A19J-06 18 61226939 61226939 C T SERPINB12 Silent p.F124F 0.35 TCGA-ER-A19J-06 18 6882253 6882253 C T ARHGAP28 Missense_Mutation p.L311F 0.50 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 19 12460485 12460485 G A ZNF442 3'UTR 0.22 TCGA-ER-A19J-06 19 15918182 15918182 G A OR10H1 Silent p.I222I 0.28 TCGA-ER-A19J-06 19 16496019 16496019 G A EPS15L1 Missense_Mutation p.P723L 0.36 tolerated(0.34) benign(0.008) TCGA-ER-A19J-06 19 18775198 18775198 A G KLHL26 Missense_Mutation p.R71G 0.38 tolerated(0.63) benign(0.079) TCGA-ER-A19J-06 19 19766392 19766392 G A ATP13A1 Silent p.F447F 0.41 TCGA-ER-A19J-06 19 19790500 19790500 C T ZNF101 Silent p.I234I 0.43 TCGA-ER-A19J-06 19 38229581 38229581 G A ZNF573 Missense_Mutation p.H604Y 0.47 deleterious(0) probably_damaging(0.974) TCGA-ER-A19J-06 19 38780919 38780919 C T SPINT2 Silent p.F184F 0.38 TCGA-ER-A19J-06 19 44131905 44131905 C T CADM4 Silent p.V34V 0.37 TCGA-ER-A19J-06 19 45285647 45285647 G A CBLC Silent p.K226K 0.38 TCGA-ER-A19J-06 19 45973918 45973918 C T FOSB Missense_Mutation p.S53F 0.38 deleterious(0) possibly_damaging(0.485) TCGA-ER-A19J-06 19 51771841 51771841 G T SIGLECL1 Missense_Mutation p.R195L 0.53 deleterious_low_confidence(0.01) benign(0.034) TCGA-ER-A19J-06 19 52076502 52076502 C T ZNF175 5'UTR 0.45 TCGA-ER-A19J-06 19 54848889 54848889 C T LILRA4 Missense_Mutation p.G245D 0.48 tolerated(0.2) possibly_damaging(0.875) TCGA-ER-A19J-06 19 56223315 56223315 G A NLRP9 Silent p.T898T 0.37 TCGA-ER-A19J-06 19 56424103 56424103 C T NLRP13 Silent p.L360L 0.32 TCGA-ER-A19J-06 19 56443522 56443522 G A NLRP13 Silent p.F52F 0.38 TCGA-ER-A19J-06 19 57984993 57984993 A T ZNF772 Silent p.T373T 0.39 TCGA-ER-A19J-06 19 58361538 58361538 C T CTD-2583A14.10 Intron 0.25 TCGA-ER-A19J-06 19 58579245 58579245 C T ZNF135 Missense_Mutation p.P489S 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19J-06 19 9070154 9070154 A C MUC16 Silent p.T5764T 0.36 TCGA-ER-A19J-06 19 9083554 9083554 C T MUC16 Missense_Mutation p.G2754E 0.53 unknown(0) TCGA-ER-A19J-06 1 109780523 109780523 C T SARS 3'UTR 0.36 TCGA-ER-A19J-06 1 115401288 115401288 A C SYCP1 Silent p.R138R 0.40 TCGA-ER-A19J-06 1 117297429 117297429 G A CD2 Missense_Mutation p.E80K 0.44 tolerated(0.93) benign(0.004) TCGA-ER-A19J-06 1 118526470 118526470 C T SPAG17 Missense_Mutation p.E1946K 0.47 tolerated(1) benign(0.001) TCGA-ER-A19J-06 1 118628610 118628610 G A SPAG17 Missense_Mutation p.P566L 0.47 tolerated(0.11) benign(0.057) TCGA-ER-A19J-06 1 119427288 119427288 G A TBX15 3'UTR 0.46 TCGA-ER-A19J-06 1 12164486 12164486 G A TNFRSF8 Missense_Mutation p.E107K 0.18 tolerated(0.09) probably_damaging(0.933) TCGA-ER-A19J-06 1 150526312 150526312 G A ADAMTSL4 Missense_Mutation p.R282Q 0.20 tolerated(0.13) benign(0.022) TCGA-ER-A19J-06 1 155448752 155448752 G A ASH1L Silent p.I1303I 0.39 TCGA-ER-A19J-06 1 158368662 158368662 C T OR10T2 Missense_Mutation p.A199T 0.34 tolerated(0.09) benign(0.01) TCGA-ER-A19J-06 1 160254895 160254895 C T PEX19 Missense_Mutation p.G7D 0.46 tolerated_low_confidence(1) benign(0) TCGA-ER-A19J-06 1 168282080 168282080 C T TBX19 Missense_Mutation p.S396F 0.48 deleterious_low_confidence(0.04) benign(0.347) TCGA-ER-A19J-06 1 18808760 18808760 C T KLHDC7A Missense_Mutation p.R429C 0.20 tolerated(0.08) benign(0.005) TCGA-ER-A19J-06 1 19062256 19062256 C T PAX7 Missense_Mutation p.S429F 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.62) TCGA-ER-A19J-06 1 200822531 200822531 G A CAMSAP2 Missense_Mutation p.R1244H 0.54 deleterious(0) probably_damaging(0.993) TCGA-ER-A19J-06 1 223567524 223567524 G A C1orf65 Missense_Mutation p.R236Q 0.08 tolerated(1) benign(0.001) TCGA-ER-A19J-06 1 240969562 240969562 C T RGS7 Missense_Mutation p.E383K 0.33 tolerated(0.08) probably_damaging(0.99) TCGA-ER-A19J-06 1 241094032 241094032 C T RGS7 Missense_Mutation p.E124K 0.27 deleterious(0) probably_damaging(0.979) TCGA-ER-A19J-06 1 242015641 242015641 G A EXO1 Missense_Mutation p.G70E 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A19J-06 1 247587626 247587626 C T NLRP3 Missense_Mutation p.P294L 0.38 deleterious(0) possibly_damaging(0.809) TCGA-ER-A19J-06 1 247588006 247588006 G A NLRP3 Missense_Mutation p.G421R 0.35 tolerated(0.05) probably_damaging(1) TCGA-ER-A19J-06 1 248756584 248756584 G A OR2T10 Silent p.I162I 0.30 TCGA-ER-A19J-06 1 26688335 26688335 G A ZNF683 Missense_Mutation p.P441L 0.45 deleterious(0) probably_damaging(0.928) TCGA-ER-A19J-06 1 36432659 36432659 C T AGO3 Missense_Mutation p.P99S 0.33 deleterious(0.02) benign(0.178) TCGA-ER-A19J-06 1 43783566 43783566 C T TIE1 Silent p.I915I 0.45 TCGA-ER-A19J-06 1 47348955 47348955 T G CYP4Z2P RNA 0.33 TCGA-ER-A19J-06 1 48861019 48861019 G A SPATA6 Missense_Mutation p.P263L 0.40 tolerated(0.19) probably_damaging(0.996) TCGA-ER-A19J-06 1 53559150 53559150 G A SLC1A7 Silent p.I260I 0.33 TCGA-ER-A19J-06 1 70877071 70877071 T C CTH 5'UTR 0.39 TCGA-ER-A19J-06 1 75704210 75704210 C T SLC44A5 Missense_Mutation p.G215E 0.43 tolerated(1) benign(0) TCGA-ER-A19J-06 1 92428328 92428328 G A BRDT Missense_Mutation p.R6Q 0.40 tolerated(0.93) benign(0.087) TCGA-ER-A19J-06 1 9795138 9795138 C T CLSTN1 Missense_Mutation p.V660I 0.37 tolerated(0.46) benign(0.001) TCGA-ER-A19J-06 20 18022287 18022287 C T OVOL2 Silent p.L134L 0.68 TCGA-ER-A19J-06 20 19664910 19664910 G A SLC24A3 Missense_Mutation p.R331Q 0.27 tolerated(0.05) probably_damaging(0.991) TCGA-ER-A19J-06 20 29847381 29847381 G A DEFB115 Silent p.K71K 0.26 TCGA-ER-A19J-06 20 50406949 50406949 G A SALL4 Silent p.I691I 0.27 TCGA-ER-A19J-06 20 50701141 50701141 G A ZFP64 Silent p.S631S 0.18 TCGA-ER-A19J-06 20 52570090 52570090 C T BCAS1 Missense_Mutation p.E521K 0.63 deleterious(0) possibly_damaging(0.853) TCGA-ER-A19J-06 20 62848520 62848520 G A MYT1 Missense_Mutation p.E578K 0.15 probably_damaging(0.999) TCGA-ER-A19J-06 20 8678380 8678380 G A PLCB1 Missense_Mutation p.E373K 0.68 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 21 42080414 42080414 C T DSCAM Silent p.G109G 0.31 TCGA-ER-A19J-06 21 47835985 47835985 T C PCNT Silent p.G2051G 0.29 TCGA-ER-A19J-06 22 17119551 17119551 C T TPTEP1 RNA 0.55 TCGA-ER-A19J-06 22 26747088 26747088 G A SEZ6L Silent p.V826V 0.44 TCGA-ER-A19J-06 22 26895103 26895103 C AA TFIP11 Frame_Shift_Ins p.M432Ifs*2 0.31 TCGA-ER-A19J-06 22 30035121 30035121 C T NF2 Missense_Mutation p.H95Y 0.28 tolerated(1) benign(0.021) TCGA-ER-A19J-06 22 37769278 37769278 G A ELFN2 Missense_Mutation p.T766M 0.34 deleterious(0) probably_damaging(0.95) TCGA-ER-A19J-06 22 50722063 50722063 G A PLXNB2 Silent p.S846S 0.39 TCGA-ER-A19J-06 2 130897757 130897757 G A CCDC74B Nonsense_Mutation p.Q291* 0.46 TCGA-ER-A19J-06 2 166451582 166451582 G A CSRNP3 Missense_Mutation p.G3R 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 2 179585787 179585787 C T TTN Nonsense_Mutation p.W7653* 0.33 TCGA-ER-A19J-06 2 179611630 179611630 G A TTN Intron 0.36 TCGA-ER-A19J-06 2 179659276 179659276 C T TTN Silent p.V416V 0.31 TCGA-ER-A19J-06 2 179659761 179659761 C T TTN Missense_Mutation p.G378E 0.33 TCGA-ER-A19J-06 2 182322966 182322966 T G ITGA4 Missense_Mutation p.S81A 0.33 tolerated(0.15) benign(0.015) TCGA-ER-A19J-06 2 189870969 189870969 G A COL3A1 Missense_Mutation p.G1026E 0.34 probably_damaging(1) TCGA-ER-A19J-06 2 189963464 189963464 G A COL5A2 Missense_Mutation p.P131S 0.40 possibly_damaging(0.512) TCGA-ER-A19J-06 2 215440511 215440511 G A VWC2L Silent p.S212S 0.43 TCGA-ER-A19J-06 2 215809775 215809775 G A ABCA12 Silent p.I2431I 0.38 TCGA-ER-A19J-06 2 220073809 220073809 G A ZFAND2B Intron 0.24 TCGA-ER-A19J-06 2 230914621 230914621 C T SLC16A14 Splice_Site p.X87_splice 0.56 TCGA-ER-A19J-06 2 26677603 26677603 C T DRC1 Missense_Mutation p.P670S 0.31 tolerated(0.09) benign(0.351) TCGA-ER-A19J-06 2 37041325 37041325 G A VIT Splice_Site p.X635_splice 0.48 TCGA-ER-A19J-06 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.33 TCGA-ER-A19J-06 2 68882087 68882087 G C PROKR1 Missense_Mutation p.W187C 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 2 90139365 90139365 C T IGKV1D-16 Missense_Mutation p.R46W 0.42 deleterious(0.04) benign(0.061) TCGA-ER-A19J-06 3 120366744 120366744 G A HGD Missense_Mutation p.S150L 0.85 deleterious(0) probably_damaging(0.916) TCGA-ER-A19J-06 3 128780670 128780670 G A GP9 Missense_Mutation p.E30K 0.73 deleterious(0.03) probably_damaging(0.96) TCGA-ER-A19J-06 3 138738677 138738677 G A PRR23B 3'UTR 0.78 TCGA-ER-A19J-06 3 168819869 168819869 C T MECOM Missense_Mutation p.G794E 0.58 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 3 172241178 172241178 C T TNFSF10 5'UTR 0.78 TCGA-ER-A19J-06 3 38768437 38768437 C T SCN10A Missense_Mutation p.R916Q 0.84 deleterious(0.03) possibly_damaging(0.867) TCGA-ER-A19J-06 3 49162246 49162246 G A LAMB2 Silent p.A999A 0.84 TCGA-ER-A19J-06 3 66413327 66413327 A C SLC25A26 Missense_Mutation p.Q181P 0.50 deleterious(0.03) benign(0.135) TCGA-ER-A19J-06 4 110687915 110687915 G A CFI Silent p.L41L 0.28 TCGA-ER-A19J-06 4 158254447 158254447 G A GRIA2 Missense_Mutation p.G366E 0.60 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 4 162402241 162402241 G A FSTL5 Silent p.F513F 0.37 TCGA-ER-A19J-06 4 167658745 167658745 G A SPOCK3 Silent p.I338I 0.40 TCGA-ER-A19J-06 4 187455465 187455465 G A MTNR1A Missense_Mutation p.S144F 0.36 deleterious(0) possibly_damaging(0.756) TCGA-ER-A19J-06 4 187535364 187535364 G A FAT1 Silent p.F3070F 0.42 TCGA-ER-A19J-06 4 23816008 23816008 A C PPARGC1A Silent p.G366G 0.45 TCGA-ER-A19J-06 4 6611572 6611572 C T MAN2B2 Missense_Mutation p.T685I 0.42 tolerated(0.17) benign(0.002) TCGA-ER-A19J-06 4 77675569 77675569 C T SHROOM3 Silent p.S1311S 0.39 TCGA-ER-A19J-06 4 88534195 88534195 G A DSPP Missense_Mutation p.G286E 0.32 possibly_damaging(0.706) TCGA-ER-A19J-06 4 94436461 94436461 C T GRID2 Missense_Mutation p.P698S 0.38 deleterious(0.01) probably_damaging(0.963) TCGA-ER-A19J-06 5 101834499 101834499 C T SLCO6A1 Missense_Mutation p.R17K 0.35 tolerated(0.92) benign(0) TCGA-ER-A19J-06 5 11082825 11082825 C T CTNND2 Missense_Mutation p.R924K 0.36 deleterious(0.01) possibly_damaging(0.867) TCGA-ER-A19J-06 5 13717540 13717540 C T DNAH5 Missense_Mutation p.E4197K 0.56 possibly_damaging(0.621) TCGA-ER-A19J-06 5 13735985 13735985 C T DNAH5 Missense_Mutation p.E3838K 0.41 benign(0.292) TCGA-ER-A19J-06 5 137424747 137424747 G A WNT8A Missense_Mutation p.A167T 0.43 deleterious(0.01) possibly_damaging(0.604) TCGA-ER-A19J-06 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.38 benign(0) TCGA-ER-A19J-06 5 140215867 140215867 G A PCDHA7 Silent p.T633T 0.44 TCGA-ER-A19J-06 5 140229659 140229659 G A PCDHA9 Missense_Mutation p.E527K 0.37 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ER-A19J-06 5 140554243 140554243 C T PCDHB7 Silent p.A609A 0.26 TCGA-ER-A19J-06 5 140626406 140626406 C T PCDHB15 Silent p.T420T 0.34 TCGA-ER-A19J-06 5 154393562 154393562 C T KIF4B Missense_Mutation p.S48F 0.30 deleterious(0) possibly_damaging(0.74) TCGA-ER-A19J-06 5 15928186 15928186 C T FBXL7 Silent p.S105S 0.42 TCGA-ER-A19J-06 5 15928559 15928559 G C FBXL7 Missense_Mutation p.V230L 0.31 tolerated(0.92) benign(0.001) TCGA-ER-A19J-06 5 161116047 161116047 G A GABRA6 Silent p.L106L 0.51 TCGA-ER-A19J-06 5 180166799 180166799 C T OR2Y1 Missense_Mutation p.G87E 0.23 deleterious(0.02) possibly_damaging(0.796) TCGA-ER-A19J-06 5 19520786 19520786 C T CDH18 Missense_Mutation p.E498K 0.54 deleterious(0) probably_damaging(0.997) TCGA-ER-A19J-06 5 195239 195239 A C LRRC14B Missense_Mutation p.D439A 0.38 deleterious(0.02) possibly_damaging(0.693) TCGA-ER-A19J-06 5 31466354 31466354 G A DROSHA Missense_Mutation p.R801C 0.41 deleterious(0.03) probably_damaging(0.95) TCGA-ER-A19J-06 5 41018496 41018496 C T MROH2B Missense_Mutation p.E904K 0.50 deleterious(0) probably_damaging(0.981) TCGA-ER-A19J-06 5 41313591 41313591 C T PLCXD3 3'UTR 0.56 TCGA-ER-A19J-06 5 42711312 42711312 G A GHR Missense_Mutation p.D208N 0.47 deleterious(0.01) possibly_damaging(0.676) TCGA-ER-A19J-06 5 42719062 42719062 G A GHR Missense_Mutation p.D485N 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 5 5232586 5232586 G A ADAMTS16 Missense_Mutation p.G603R 0.33 deleterious(0) probably_damaging(0.996) TCGA-ER-A19J-06 5 75621287 75621287 C T SV2C Missense_Mutation p.P700L 0.33 deleterious(0) probably_damaging(0.998) TCGA-ER-A19J-06 5 78915896 78915896 C T PAPD4 Nonsense_Mutation p.R73* 0.45 TCGA-ER-A19J-06 6 29274589 29274589 C T OR14J1 Silent p.L41L 0.19 TCGA-ER-A19J-06 6 31610669 31610669 G C BAG6 Silent p.P630P 0.25 TCGA-ER-A19J-06 6 38743591 38743591 G A DNAH8 Missense_Mutation p.G392E 0.34 probably_damaging(1) TCGA-ER-A19J-06 6 51918008 51918008 C T PKHD1 Missense_Mutation p.R669H 0.40 tolerated(1) benign(0.001) TCGA-ER-A19J-06 6 52657664 52657664 G C GSTA1 Missense_Mutation p.P179R 0.76 deleterious(0.02) probably_damaging(0.93) TCGA-ER-A19J-06 6 56471716 56471716 G A DST Intron 0.63 TCGA-ER-A19J-06 6 57472424 57472424 C T PRIM2 3'UTR 0.26 TCGA-ER-A19J-06 6 70778326 70778326 G A COL19A1 Silent p.G394G 0.64 TCGA-ER-A19J-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.86 deleterious(0) probably_damaging(0.967) TCGA-ER-A19J-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.86 deleterious(0) possibly_damaging(0.838) TCGA-ER-A19J-06 7 150499311 150499311 G A TMEM176A Silent p.Q61Q 0.89 TCGA-ER-A19J-06 7 20198857 20198857 C T MACC1 Missense_Mutation p.G376E 0.93 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 7 21882282 21882282 T A DNAH11 Missense_Mutation p.N3611K 0.88 probably_damaging(1) TCGA-ER-A19J-06 7 27187315 27187315 C T HOXA6 Silent p.Q18Q 0.87 TCGA-ER-A19J-06 7 44579241 44579241 G A NPC1L1 Missense_Mutation p.A252V 0.92 tolerated(0.32) benign(0) TCGA-ER-A19J-06 7 47930261 47930261 C T PKD1L1 Missense_Mutation p.E852K 0.87 tolerated(0.11) benign(0.288) TCGA-ER-A19J-06 7 82584883 82584883 C T PCLO Missense_Mutation p.E1796K 0.89 unknown(0) TCGA-ER-A19J-06 7 88424358 88424358 C T C7orf62 Intron 0.83 TCGA-ER-A19J-06 8 100673581 100673581 G A VPS13B Splice_Site p.X1995_splice 0.79 TCGA-ER-A19J-06 8 101065100 101065100 G A RGS22 Missense_Mutation p.P540L 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19J-06 8 106815038 106815038 G A ZFPM2 Missense_Mutation p.E910K 0.13 tolerated_low_confidence(0.12) benign(0.116) TCGA-ER-A19J-06 8 113246697 113246697 T C CSMD3 Missense_Mutation p.K3546R 0.24 deleterious(0.01) benign(0.23) TCGA-ER-A19J-06 8 113585876 113585876 C T CSMD3 Missense_Mutation p.G1299E 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19J-06 8 120118181 120118181 C T COLEC10 Silent p.I195I 0.82 TCGA-ER-A19J-06 8 125132153 125132153 C T FER1L6 3'UTR 0.80 TCGA-ER-A19J-06 8 139163500 139163500 G A FAM135B Missense_Mutation p.S1073F 0.82 deleterious(0) probably_damaging(0.979) TCGA-ER-A19J-06 8 3265737 3265737 G A CSMD1 Silent p.F585F 0.88 TCGA-ER-A19J-06 8 52321481 52321481 C T PXDNL Silent p.G901G 0.88 TCGA-ER-A19J-06 8 52359637 52359637 G A PXDNL Silent p.G484G 0.10 TCGA-ER-A19J-06 8 54147522 54147522 G A OPRK1 Missense_Mutation p.S136F 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19J-06 8 68992692 68992692 G A PREX2 Missense_Mutation p.E553K 0.08 tolerated(0.05) possibly_damaging(0.615) TCGA-ER-A19J-06 8 82370842 82370842 C T FABP9 Missense_Mutation p.V115I 0.82 tolerated(0.53) benign(0.017) TCGA-ER-A19J-06 9 113238532 113238532 T C SVEP1 Missense_Mutation p.K851E 0.45 possibly_damaging(0.704) TCGA-ER-A19J-06 9 125330256 125330256 G A OR1L8 Silent p.L167L 0.29 TCGA-ER-A19J-06 9 130111235 130111235 C T GARNL3 Silent p.F488F 0.44 TCGA-ER-A19J-06 9 130700157 130700157 C T DPM2 5'UTR 0.65 TCGA-ER-A19J-06 9 135277532 135277532 G A TTF1 Missense_Mutation p.S226F 0.42 tolerated_low_confidence(0.74) possibly_damaging(0.831) TCGA-ER-A19J-06 9 140952579 140952579 C T CACNA1B Silent p.F1395F 0.37 TCGA-ER-A19J-06 9 5233832 5233832 T G INSL4 Missense_Mutation p.C125W 0.64 deleterious(0) probably_damaging(0.938) TCGA-ER-A19J-06 9 84564725 84564725 G A RP11-383M4.6 Intron 0.36 TCGA-ER-A19J-06 X 107407869 107407869 G A COL4A6 Missense_Mutation p.P1345S 0.94 benign(0.009) TCGA-ER-A19J-06 X 122755259 122755259 G A THOC2 Missense_Mutation p.P1322L 0.86 tolerated(0.09) benign(0.067) TCGA-ER-A19J-06 X 12627935 12627935 C T FRMPD4 Missense_Mutation p.P85L 0.89 deleterious(0.03) probably_damaging(1) TCGA-ER-A19J-06 X 1428361 1428361 G A CSF2RA Missense_Mutation p.E432K 0.56 deleterious(0.01) possibly_damaging(0.895) TCGA-ER-A19J-06 X 152722639 152722639 G A HAUS7 Silent p.L144L 0.83 TCGA-ER-A19J-06 X 20156723 20156723 T C EIF1AX Missense_Mutation p.R12G 0.90 deleterious(0) unknown(0) TCGA-ER-A19J-06 X 79947391 79947391 A C BRWD3 Missense_Mutation p.W1138G 0.93 deleterious(0) probably_damaging(0.995) TCGA-ER-A19J-06 X 9711604 9711604 C G GPR143 Splice_Site p.X256_splice 0.85 TCGA-ER-A19J-06 Y 14968653 14968653 T G USP9Y Missense_Mutation p.S2439R 1.00 deleterious(0.01) benign(0.001) TCGA-ER-A19K-01 10 116093018 116093018 G T AFAP1L2 Missense_Mutation p.T61N 0.23 tolerated(0.21) benign(0.288) TCGA-ER-A19K-01 10 118383596 118383596 C T PNLIPRP2 Missense_Mutation p.P64S 0.20 tolerated(0.05) benign(0.06) TCGA-ER-A19K-01 10 119805588 119805588 G - RAB11FIP2 Frame_Shift_Del p.S31Vfs*9 0.16 TCGA-ER-A19K-01 10 12149924 12149924 C T DHTKD1 Silent p.L688L 0.24 TCGA-ER-A19K-01 10 123256123 123256123 C T FGFR2 Missense_Mutation p.E597K 0.20 tolerated(0.11) benign(0.255) TCGA-ER-A19K-01 10 123846584 123846584 C T TACC2 Silent p.P1523P 0.32 TCGA-ER-A19K-01 10 125521433 125521433 C T CPXM2 Missense_Mutation p.E578K 0.22 tolerated(0.63) possibly_damaging(0.676) TCGA-ER-A19K-01 10 135038295 135038295 C T KNDC1 Silent p.L1717L 0.21 TCGA-ER-A19K-01 10 28378627 28378627 C T MPP7 Missense_Mutation p.E366K 0.20 tolerated(0.07) benign(0.069) TCGA-ER-A19K-01 10 465122 465122 G A DIP2C Missense_Mutation p.P208S 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-ER-A19K-01 10 48389680 48389680 C T RBP3 Missense_Mutation p.A400T 0.31 tolerated(0.51) benign(0.011) TCGA-ER-A19K-01 10 50315757 50315757 G A VSTM4 Silent p.S113S 0.33 TCGA-ER-A19K-01 10 61554277 61554277 G A CCDC6 Missense_Mutation p.S395F 0.28 deleterious(0.04) benign(0.276) TCGA-ER-A19K-01 10 61830314 61830314 T C ANK3 Missense_Mutation p.K3442R 0.29 probably_damaging(0.956) TCGA-ER-A19K-01 10 6520992 6520992 G A PRKCQ Missense_Mutation p.P439S 0.24 deleterious(0) probably_damaging(0.984) TCGA-ER-A19K-01 10 76788814 76788814 A G KAT6B Missense_Mutation p.E1411G 0.15 possibly_damaging(0.787) TCGA-ER-A19K-01 10 82112202 82112202 C T DYDC2 Intron 0.25 TCGA-ER-A19K-01 10 89468991 89468991 C T PAPSS2 Silent p.A22A 0.24 TCGA-ER-A19K-01 10 96541700 96541700 G A CYP2C19 Missense_Mutation p.M255I 0.17 deleterious(0) benign(0.002) TCGA-ER-A19K-01 10 96802653 96802653 G A CYP2C8 Silent p.I381I 0.21 TCGA-ER-A19K-01 10 97775968 97775968 G A CC2D2B Missense_Mutation p.S140N 0.25 tolerated(0.37) benign(0.009) TCGA-ER-A19K-01 11 103908505 103908505 T C DDI1 Missense_Mutation p.S319P 0.23 deleterious(0) probably_damaging(0.91) TCGA-ER-A19K-01 11 103908533 103908533 T G DDI1 Missense_Mutation p.M328R 0.28 deleterious(0) benign(0.286) TCGA-ER-A19K-01 11 10585602 10585602 G C LYVE1 Missense_Mutation p.F94L 0.21 tolerated(0.34) benign(0.012) TCGA-ER-A19K-01 11 106681008 106681008 C T GUCY1A2 Missense_Mutation p.R468K 0.20 deleterious(0) probably_damaging(0.992) TCGA-ER-A19K-01 11 106849442 106849442 G A GUCY1A2 Silent p.F130F 0.30 TCGA-ER-A19K-01 11 108121577 108121577 T C ATM Missense_Mutation p.V462A 0.29 tolerated(0.17) benign(0.083) TCGA-ER-A19K-01 11 108382902 108382902 C T EXPH5 Missense_Mutation p.R1111K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19K-01 11 113078089 113078089 G A NCAM1 Missense_Mutation p.M304I 0.27 tolerated(0.67) benign(0.002) TCGA-ER-A19K-01 11 114450878 114450878 C T NXPE4 Missense_Mutation p.E359K 0.23 tolerated(0.53) probably_damaging(0.974) TCGA-ER-A19K-01 11 117152104 117152104 T C RNF214 Missense_Mutation p.M407T 0.29 tolerated(1) benign(0.005) TCGA-ER-A19K-01 11 117864120 117864120 T A IL10RA Missense_Mutation p.F178I 0.28 tolerated(0.16) benign(0.01) TCGA-ER-A19K-01 11 118948999 118948999 C T VPS11 Silent p.L625L 0.22 TCGA-ER-A19K-01 11 118949000 118949000 C T VPS11 Missense_Mutation p.L626F 0.22 deleterious(0) probably_damaging(0.995) TCGA-ER-A19K-01 11 119031730 119031730 G A ABCG4 Missense_Mutation p.D619N 0.21 deleterious(0.04) benign(0.145) TCGA-ER-A19K-01 11 120732744 120732744 C T GRIK4 Missense_Mutation p.S274F 0.24 deleterious(0.01) benign(0.249) TCGA-ER-A19K-01 11 1261051 1261051 C T MUC5B Silent p.P1202P 0.24 TCGA-ER-A19K-01 11 129998953 129998953 C T APLP2 Missense_Mutation p.A436V 0.31 deleterious(0.03) possibly_damaging(0.685) TCGA-ER-A19K-01 11 2683405 2683405 G A KCNQ1 Intron 0.26 TCGA-ER-A19K-01 11 31086055 31086055 C T DCDC1 Missense_Mutation p.R851K 0.19 tolerated(0.3) benign(0.047) TCGA-ER-A19K-01 11 33569401 33569401 C T KIAA1549L Silent p.F862F 0.21 TCGA-ER-A19K-01 11 33569402 33569402 C G KIAA1549L Missense_Mutation p.H863D 0.17 deleterious(0) benign(0.393) TCGA-ER-A19K-01 11 35333798 35333798 C T SLC1A2 Missense_Mutation p.D170N 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 11 36597229 36597229 C T RAG1 Missense_Mutation p.P792L 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A19K-01 11 43418915 43418915 C A TTC17 Silent p.A264A 0.21 TCGA-ER-A19K-01 11 46771981 46771981 T C CKAP5 Silent p.G1849G 0.17 TCGA-ER-A19K-01 11 48347042 48347042 C T OR4C3 Nonsense_Mutation p.Q184* 0.18 TCGA-ER-A19K-01 11 48510521 48510521 C T OR4A47 Silent p.F59F 0.26 TCGA-ER-A19K-01 11 5275577 5275577 G A HBG2 Missense_Mutation p.A87V 0.15 deleterious(0) possibly_damaging(0.861) TCGA-ER-A19K-01 11 55595549 55595549 G A OR5L2 Silent p.L285L 0.21 TCGA-ER-A19K-01 11 55861531 55861531 T C OR8I2 Missense_Mutation p.F250L 0.21 deleterious(0.04) benign(0.389) TCGA-ER-A19K-01 11 58979353 58979353 T A MPEG1 Missense_Mutation p.K329M 0.27 deleterious(0) probably_damaging(0.975) TCGA-ER-A19K-01 11 70265858 70265858 C T CTTN Missense_Mutation p.S192F 0.21 deleterious(0) probably_damaging(0.991) TCGA-ER-A19K-01 11 74800327 74800327 C T OR2AT4 Silent p.Q144Q 0.19 TCGA-ER-A19K-01 11 77907290 77907290 C T USP35 5'UTR 0.29 TCGA-ER-A19K-01 11 78381171 78381171 C T TENM4 Silent p.E2073E 0.35 TCGA-ER-A19K-01 11 8008871 8008871 C T EIF3F 5'UTR 0.20 TCGA-ER-A19K-01 11 85436663 85436663 C T SYTL2 Silent p.G279G 0.15 TCGA-ER-A19K-01 11 88300511 88300511 C T GRM5 Silent p.T780T 0.30 TCGA-ER-A19K-01 12 108008928 108008928 C T BTBD11 Missense_Mutation p.P664S 0.33 tolerated(1) possibly_damaging(0.615) TCGA-ER-A19K-01 12 111779714 111779714 G A CUX2 Silent p.R1172R 0.31 TCGA-ER-A19K-01 12 111779715 111779715 G A CUX2 Missense_Mutation p.V1173M 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 12 1137495 1137495 C T ERC1 Silent p.S142S 0.31 TCGA-ER-A19K-01 12 11506726 11506726 C T PRB1 Missense_Mutation p.G104E 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-ER-A19K-01 12 117660623 117660623 G A NOS1 Missense_Mutation p.S1325F 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A19K-01 12 122689220 122689220 C T B3GNT4 Missense_Mutation p.L19F 0.14 tolerated_low_confidence(0.06) benign(0.013) TCGA-ER-A19K-01 12 124270429 124270429 C T DNAH10 Missense_Mutation p.A395V 0.27 possibly_damaging(0.718) TCGA-ER-A19K-01 12 15035979 15035979 G A MGP Missense_Mutation p.P58S 0.31 deleterious(0.01) probably_damaging(0.94) TCGA-ER-A19K-01 12 3789485 3789485 C T EFCAB4B Missense_Mutation p.E87K 0.43 deleterious(0.02) possibly_damaging(0.731) TCGA-ER-A19K-01 12 40653294 40653294 G A LRRK2 Silent p.L477L 0.28 TCGA-ER-A19K-01 12 43826465 43826465 G A ADAMTS20 Missense_Mutation p.T957I 0.30 tolerated(0.12) benign(0.071) TCGA-ER-A19K-01 12 51751177 51751177 T C GALNT6 Missense_Mutation p.K520E 0.35 tolerated(0.28) probably_damaging(0.944) TCGA-ER-A19K-01 12 52450362 52450362 T G NR4A1 Missense_Mutation p.L377R 0.18 deleterious(0) probably_damaging(0.995) TCGA-ER-A19K-01 12 53084927 53084927 A G KRT77 3'UTR 0.26 TCGA-ER-A19K-01 12 57600328 57600328 C T LRP1 Missense_Mutation p.S3888L 0.34 benign(0.075) TCGA-ER-A19K-01 12 63994127 63994134 AAATGATT - DPY19L2 Frame_Shift_Del p.I438Efs*6 0.14 TCGA-ER-A19K-01 12 6933395 6933395 C T GPR162 Missense_Mutation p.L111F 0.31 deleterious(0) probably_damaging(0.997) TCGA-ER-A19K-01 12 70928384 70928384 C G PTPRB Silent p.T2084T 0.31 TCGA-ER-A19K-01 12 75444659 75444659 G A KCNC2 Nonsense_Mutation p.R376* 0.23 TCGA-ER-A19K-01 12 80714293 80714293 G A OTOGL Silent p.E1289E 0.22 TCGA-ER-A19K-01 12 94603446 94603446 C T PLXNC1 Missense_Mutation p.P507L 0.26 tolerated(0.69) benign(0.002) TCGA-ER-A19K-01 13 103718634 103718634 G A SLC10A2 5'UTR 0.27 TCGA-ER-A19K-01 13 109365058 109365058 G A MYO16 Silent p.S92S 0.33 TCGA-ER-A19K-01 13 114201629 114201629 C T TMCO3 Missense_Mutation p.P569S 0.22 deleterious(0) probably_damaging(0.956) TCGA-ER-A19K-01 13 114201630 114201630 C T TMCO3 Missense_Mutation p.P569L 0.18 deleterious(0.03) probably_damaging(0.956) TCGA-ER-A19K-01 13 26163813 26163813 C T ATP8A2 Silent p.I729I 0.22 TCGA-ER-A19K-01 13 45148287 45148287 G A TSC22D1 Missense_Mutation p.P642S 0.24 tolerated(0.05) benign(0.004) TCGA-ER-A19K-01 13 47224445 47224445 C T LRCH1 Silent p.I139I 0.24 TCGA-ER-A19K-01 13 53603031 53603031 G A OLFM4 Silent p.G20G 0.25 TCGA-ER-A19K-01 13 99358482 99358482 C T SLC15A1 Missense_Mutation p.G392E 0.30 tolerated(0.19) benign(0.008) TCGA-ER-A19K-01 14 101522564 101522564 G A MIR323B RNA 0.26 TCGA-ER-A19K-01 14 107170163 107170163 G A IGHV1-69 Missense_Mutation p.S40F 0.21 deleterious(0.01) possibly_damaging(0.583) TCGA-ER-A19K-01 14 20483272 20483272 G A OR4K14 Silent p.F27F 0.25 TCGA-ER-A19K-01 14 22133327 22133327 G A OR4E2 Missense_Mutation p.E11K 0.26 deleterious(0.01) benign(0.097) TCGA-ER-A19K-01 14 24114622 24114622 G A DHRS2 3'UTR 0.44 TCGA-ER-A19K-01 14 24658688 24658688 C T TM9SF1 Missense_Mutation p.G585D 0.33 deleterious(0) probably_damaging(0.993) TCGA-ER-A19K-01 14 50910462 50910462 G A MAP4K5 Silent p.P488P 0.15 TCGA-ER-A19K-01 14 74967592 74967592 C T LTBP2 Missense_Mutation p.E1821K 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ER-A19K-01 14 78174266 78174266 G A ALKBH1 Missense_Mutation p.R28C 0.25 deleterious(0) probably_damaging(0.973) TCGA-ER-A19K-01 14 91927910 91927910 G A SMEK1 Missense_Mutation p.L723F 0.27 tolerated(0.48) benign(0.004) TCGA-ER-A19K-01 14 91976039 91976039 G A SMEK1 5'UTR 0.60 TCGA-ER-A19K-01 14 93653003 93653003 T C TMEM251 Missense_Mutation p.L166P 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19K-01 15 23890456 23890456 C G MAGEL2 Missense_Mutation p.E209Q 0.16 deleterious(0) possibly_damaging(0.617) TCGA-ER-A19K-01 15 25336841 25336841 C T SNORD116-23 5'Flank 0.40 TCGA-ER-A19K-01 15 34647303 34647303 G A NUTM1 Missense_Mutation p.E454K 0.25 deleterious(0.04) probably_damaging(0.946) TCGA-ER-A19K-01 15 41228536 41228536 C T DLL4 Missense_Mutation p.H451Y 0.29 deleterious(0) possibly_damaging(0.79) TCGA-ER-A19K-01 15 43873490 43873490 G A PPIP5K1 Nonsense_Mutation p.R292* 0.26 TCGA-ER-A19K-01 15 57731224 57731224 C T CGNL1 Missense_Mutation p.R343W 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 15 59911499 59911499 C T GCNT3 Silent p.I354I 0.23 TCGA-ER-A19K-01 15 63449612 63449612 C T RPS27L 5'UTR 0.17 TCGA-ER-A19K-01 15 69328262 69328262 A G NOX5 Missense_Mutation p.S392G 0.25 tolerated(0.34) benign(0.101) TCGA-ER-A19K-01 15 69561424 69561424 C T GLCE Silent p.F565F 0.36 TCGA-ER-A19K-01 15 86697787 86697787 C T AGBL1 Missense_Mutation p.S84F 0.30 deleterious(0.01) benign(0.033) TCGA-ER-A19K-01 16 2025386 2025386 C T TBL3 Missense_Mutation p.S251F 0.29 tolerated(0.15) benign(0.022) TCGA-ER-A19K-01 16 20976479 20976479 C T DNAH3 Silent p.R2909R 0.23 TCGA-ER-A19K-01 16 22358818 22358818 G A CDR2 Missense_Mutation p.S278F 0.24 deleterious(0) probably_damaging(0.982) TCGA-ER-A19K-01 16 27238100 27238100 G A NSMCE1 Missense_Mutation p.R181W 0.23 tolerated(0.1) possibly_damaging(0.741) TCGA-ER-A19K-01 16 324262 324262 G A RGS11 Missense_Mutation p.P108S 0.27 deleterious(0) benign(0.034) TCGA-ER-A19K-01 16 57101676 57101676 G A NLRC5 Missense_Mutation p.D1479N 0.22 tolerated(0.2) benign(0.001) TCGA-ER-A19K-01 16 61687599 61687599 C T CDH8 Silent p.Q771Q 0.17 TCGA-ER-A19K-01 16 66918814 66918814 C T PDP2 Silent p.L209L 0.32 TCGA-ER-A19K-01 16 72166868 72166868 A C PMFBP1 Missense_Mutation p.M409R 0.23 tolerated(0.43) benign(0.009) TCGA-ER-A19K-01 16 7629803 7629803 G A RBFOX1 Missense_Mutation p.D119N 0.15 deleterious(0) probably_damaging(0.996) TCGA-ER-A19K-01 16 84256066 84256066 G A KCNG4 Silent p.I439I 0.31 TCGA-ER-A19K-01 17 10436645 10436645 C T MYH2 Missense_Mutation p.G800R 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A19K-01 17 17120420 17120420 T A FLCN Missense_Mutation p.D380V 0.29 tolerated(0.38) possibly_damaging(0.471) TCGA-ER-A19K-01 17 17769636 17769636 G A TOM1L2 Missense_Mutation p.S353F 0.25 deleterious(0) possibly_damaging(0.823) TCGA-ER-A19K-01 17 21319580 21319580 C T KCNJ12 Missense_Mutation p.T309I 0.09 deleterious(0) possibly_damaging(0.85) TCGA-ER-A19K-01 17 32684565 32684565 A C CCL13 Missense_Mutation p.S50R 0.28 deleterious(0.01) possibly_damaging(0.752) TCGA-ER-A19K-01 17 3301484 3301484 G A OR1E1 Missense_Mutation p.S74F 0.36 deleterious(0) possibly_damaging(0.84) TCGA-ER-A19K-01 17 38242991 38242991 C T THRA Missense_Mutation p.S203F 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-ER-A19K-01 17 38816255 38816255 C T KRT222 Missense_Mutation p.E144K 0.19 deleterious(0) probably_damaging(0.998) TCGA-ER-A19K-01 17 42457090 42457090 G A ITGA2B Silent p.V615V 0.28 TCGA-ER-A19K-01 17 46669679 46669679 G A HOXB5 Silent p.S234S 0.24 TCGA-ER-A19K-01 17 4711613 4711613 C T PLD2 Silent p.D95D 0.28 TCGA-ER-A19K-01 17 49338083 49338083 C T UTP18 Silent p.S46S 0.33 TCGA-ER-A19K-01 17 59989344 59989344 C T INTS2 Missense_Mutation p.C254Y 0.26 deleterious(0) probably_damaging(0.929) TCGA-ER-A19K-01 17 62026783 62026783 C T SCN4A Missense_Mutation p.G987R 0.50 tolerated(0.47) possibly_damaging(0.574) TCGA-ER-A19K-01 17 72537788 72537788 C T CD300C Silent p.V205V 0.28 TCGA-ER-A19K-01 17 74004714 74004714 G A EVPL Silent p.I1524I 0.32 TCGA-ER-A19K-01 17 76060883 76060883 C T TNRC6C Silent p.L823L 0.23 TCGA-ER-A19K-01 17 7701005 7701005 C T DNAH2 Silent p.F2696F 0.24 TCGA-ER-A19K-01 18 14542672 14542672 G A POTEC Silent p.I158I 0.23 TCGA-ER-A19K-01 18 3187585 3187585 G A MYOM1 Silent p.L274L 0.29 TCGA-ER-A19K-01 18 43224094 43224094 G A SLC14A2 Silent p.V440V 0.32 TCGA-ER-A19K-01 18 44560939 44560939 C T TCEB3B Missense_Mutation p.E233K 0.32 tolerated(0.15) benign(0.067) TCGA-ER-A19K-01 18 50936913 50936913 C T DCC Silent p.I1009I 0.35 TCGA-ER-A19K-01 18 59483071 59483071 C T RNF152 3'UTR 0.28 TCGA-ER-A19K-01 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-ER-A19K-01 19 10370360 10370360 G A MRPL4 Silent p.L269L 0.31 TCGA-ER-A19K-01 19 10370361 10370361 G A MRPL4 Missense_Mutation p.E270K 0.36 deleterious(0) probably_damaging(0.986) TCGA-ER-A19K-01 19 15990228 15990228 G A CYP4F2 Missense_Mutation p.P442L 0.13 deleterious(0) probably_damaging(0.994) TCGA-ER-A19K-01 19 16060754 16060754 C T OR10H4 Missense_Mutation p.P313S 0.23 tolerated(0.1) benign(0.014) TCGA-ER-A19K-01 19 16875863 16875863 C T NWD1 Missense_Mutation p.S757F 0.33 tolerated(0.38) benign(0.124) TCGA-ER-A19K-01 19 19030192 19030192 G A COPE 5'UTR 0.23 TCGA-ER-A19K-01 19 2117228 2117228 G A AP3D1 Missense_Mutation p.P618S 0.19 deleterious(0) probably_damaging(0.997) TCGA-ER-A19K-01 19 2247809 2247809 C T SF3A2 Missense_Mutation p.P220L 0.19 tolerated_low_confidence(0.16) unknown(0) TCGA-ER-A19K-01 19 36370283 36370283 C T APLP1 Silent p.R632R 0.24 TCGA-ER-A19K-01 19 38910816 38910816 C T RASGRP4 Missense_Mutation p.R155Q 0.23 tolerated(1) benign(0) TCGA-ER-A19K-01 19 40396021 40396021 G A FCGBP Missense_Mutation p.P2459L 0.10 benign(0.001) TCGA-ER-A19K-01 19 41174022 41174022 G A NUMBL Missense_Mutation p.P394L 0.24 tolerated(0.07) probably_damaging(0.981) TCGA-ER-A19K-01 19 43766253 43766253 T G PSG9 Missense_Mutation p.L156F 0.28 tolerated(0.23) benign(0.151) TCGA-ER-A19K-01 19 44932436 44932436 G A ZNF229 3'UTR 0.22 TCGA-ER-A19K-01 19 45976038 45976038 C T FOSB Missense_Mutation p.P262L 0.20 tolerated(0.13) possibly_damaging(0.726) TCGA-ER-A19K-01 19 50214011 50214011 C T CPT1C Missense_Mutation p.S588L 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A19K-01 19 51559877 51559877 G A KLK13 Silent p.T267T 0.27 TCGA-ER-A19K-01 19 52220345 52220345 C T HAS1 Silent p.R268R 0.24 TCGA-ER-A19K-01 19 52249827 52249839 GGCTCACGGTGCG - FPR1 Frame_Shift_Del p.R137Wfs*5 0.18 TCGA-ER-A19K-01 19 53761937 53761937 G A VN1R2 Silent p.G103G 0.33 TCGA-ER-A19K-01 19 55045075 55045075 G A KIR3DX1 Silent p.G65G 0.14 TCGA-ER-A19K-01 19 56312940 56312940 C T NLRP11 Silent p.L723L 0.23 TCGA-ER-A19K-01 19 56363683 56363683 G A NLRP4 Missense_Mutation p.M79I 0.13 tolerated(1) benign(0.007) TCGA-ER-A19K-01 19 56363684 56363684 G A NLRP4 Missense_Mutation p.D80N 0.13 tolerated(1) benign(0.002) TCGA-ER-A19K-01 19 56701292 56701292 C T ZSCAN5B Silent p.E464E 0.18 TCGA-ER-A19K-01 19 57647422 57647422 C T ZIM3 Missense_Mutation p.D95N 0.23 tolerated(0.27) benign(0.001) TCGA-ER-A19K-01 19 6147623 6147623 G A ACSBG2 Nonsense_Mutation p.W78* 0.31 TCGA-ER-A19K-01 19 6665305 6665305 C T TNFSF14 Missense_Mutation p.G119S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19K-01 19 7625926 7625926 C T PNPLA6 Silent p.F1291F 0.21 TCGA-ER-A19K-01 19 7692201 7692201 G A XAB2 Silent p.P150P 0.23 TCGA-ER-A19K-01 19 9085264 9085264 G A MUC16 Missense_Mutation p.S2184F 0.32 unknown(0) TCGA-ER-A19K-01 19 9089115 9089115 G A MUC16 Silent p.T900T 0.27 TCGA-ER-A19K-01 19 9677528 9677528 G A ZNF121 Silent p.S87S 0.12 TCGA-ER-A19K-01 19 9677529 9677529 G A ZNF121 Missense_Mutation p.S87F 0.12 tolerated(0.32) possibly_damaging(0.825) TCGA-ER-A19K-01 19 9921871 9921871 G A FBXL12 Nonsense_Mutation p.R228* 0.16 TCGA-ER-A19K-01 1 109910034 109910034 G A SORT1 Nonsense_Mutation p.R146* 0.26 TCGA-ER-A19K-01 1 110128924 110128924 C T GNAI3 Missense_Mutation p.A226V 0.21 deleterious(0) possibly_damaging(0.8) TCGA-ER-A19K-01 1 110300603 110300603 C T EPS8L3 Silent p.R266R 0.26 TCGA-ER-A19K-01 1 114510528 114510528 T C HIPK1 Missense_Mutation p.L841P 0.32 tolerated(0.37) benign(0.071) TCGA-ER-A19K-01 1 120437263 120437263 G A ADAM30 Missense_Mutation p.P566L 0.29 deleterious(0) probably_damaging(0.99) TCGA-ER-A19K-01 1 152326001 152326001 C T FLG2 Missense_Mutation p.G1421R 0.29 benign(0.031) TCGA-ER-A19K-01 1 152326002 152326002 C T FLG2 Silent p.R1420R 0.29 TCGA-ER-A19K-01 1 152328424 152328424 G A FLG2 Missense_Mutation p.S613L 0.25 unknown(0) TCGA-ER-A19K-01 1 152586476 152586476 C T LCE3B Missense_Mutation p.H64Y 0.59 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A19K-01 1 153004909 153004909 C T SPRR1B Nonsense_Mutation p.Q30* 0.26 TCGA-ER-A19K-01 1 153661937 153661937 C T NPR1 Silent p.T899T 0.21 TCGA-ER-A19K-01 1 155220345 155220345 G A FAM189B Missense_Mutation p.P411L 0.38 tolerated(0.65) probably_damaging(0.991) TCGA-ER-A19K-01 1 156910128 156910128 C T ARHGEF11 Missense_Mutation p.G1202S 0.13 tolerated_low_confidence(0.29) benign(0.087) TCGA-ER-A19K-01 1 157516898 157516898 G A FCRL5 Missense_Mutation p.R48C 0.27 tolerated(0.06) possibly_damaging(0.773) TCGA-ER-A19K-01 1 158390247 158390247 C T OR10K2 Missense_Mutation p.G137E 0.15 deleterious(0.03) benign(0.027) TCGA-ER-A19K-01 1 158517057 158517057 G A OR6Y1 Missense_Mutation p.S280F 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 1 159170764 159170764 G A CADM3 3'UTR 0.48 TCGA-ER-A19K-01 1 159683493 159683493 C T CRP Missense_Mutation p.G166E 0.35 tolerated(0.76) benign(0.002) TCGA-ER-A19K-01 1 161017931 161017931 T C ARHGAP30 Silent p.A960A 0.22 TCGA-ER-A19K-01 1 161976197 161976197 C T OLFML2B Missense_Mutation p.E205K 0.41 deleterious(0.05) benign(0.163) TCGA-ER-A19K-01 1 16262741 16262741 C T SPEN Missense_Mutation p.R3336W 0.24 probably_damaging(0.998) TCGA-ER-A19K-01 1 16559447 16559447 G A RSG1 Missense_Mutation p.R111C 0.25 tolerated(0.1) benign(0.348) TCGA-ER-A19K-01 1 167806491 167806491 G A ADCY10 Missense_Mutation p.R1025C 0.21 tolerated(0.21) benign(0.027) TCGA-ER-A19K-01 1 169586410 169586410 C T SELP Missense_Mutation p.E113K 0.18 deleterious(0) possibly_damaging(0.892) TCGA-ER-A19K-01 1 173552686 173552686 C T SLC9C2 Missense_Mutation p.G200E 0.28 tolerated(0.51) benign(0.376) TCGA-ER-A19K-01 1 17682598 17682598 C T PADI4 Silent p.S477S 0.32 TCGA-ER-A19K-01 1 177001814 177001814 C T ASTN1 Missense_Mutation p.E215K 0.29 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-ER-A19K-01 1 177226496 177226496 C T BRINP2 Silent p.I215I 0.26 TCGA-ER-A19K-01 1 182898848 182898848 C T SHCBP1L Silent p.R372R 0.15 TCGA-ER-A19K-01 1 186647412 186647412 C T PTGS2 Silent p.P146P 0.24 TCGA-ER-A19K-01 1 18692048 18692048 G A IGSF21 Missense_Mutation p.R291H 0.24 tolerated(0.77) benign(0) TCGA-ER-A19K-01 1 196197328 196197328 G A KCNT2 3'UTR 0.45 TCGA-ER-A19K-01 1 196577457 196577457 G A KCNT2 5'UTR 0.26 TCGA-ER-A19K-01 1 196876105 196876105 G A CFHR4 Missense_Mutation p.G184E 0.30 tolerated(0.08) probably_damaging(1) TCGA-ER-A19K-01 1 197073963 197073963 G A ASPM Missense_Mutation p.S1473L 0.27 deleterious(0) probably_damaging(0.992) TCGA-ER-A19K-01 1 203467897 203467897 G A OPTC Silent p.R153R 0.21 TCGA-ER-A19K-01 1 20931527 20931527 C T CDA Silent p.I87I 0.50 TCGA-ER-A19K-01 1 215990482 215990482 A T USH2A Missense_Mutation p.Y3143N 0.29 probably_damaging(0.996) TCGA-ER-A19K-01 1 21890535 21890535 G A ALPL Silent p.G158G 0.21 TCGA-ER-A19K-01 1 23111487 23111487 G A EPHB2 Silent p.G243G 0.23 TCGA-ER-A19K-01 1 231829908 231829908 C T DISC1 Missense_Mutation p.P135L 0.35 tolerated(0.2) benign(0.014) TCGA-ER-A19K-01 1 233394102 233394102 G A PCNXL2 Silent p.S502S 0.39 TCGA-ER-A19K-01 1 248458774 248458774 G A OR2T12 Missense_Mutation p.S36F 0.27 deleterious(0) probably_damaging(0.968) TCGA-ER-A19K-01 1 248569888 248569888 C T OR2T1 Missense_Mutation p.S198F 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19K-01 1 248790197 248790197 A T OR2T11 Missense_Mutation p.L78H 0.39 deleterious(0) probably_damaging(0.986) TCGA-ER-A19K-01 1 34087804 34087804 G A CSMD2 Silent p.I1890I 0.24 TCGA-ER-A19K-01 1 36788049 36788049 C T EVA1B Silent p.S115S 0.12 TCGA-ER-A19K-01 1 47512139 47512139 G A CYP4X1 Nonsense_Mutation p.W358* 0.18 TCGA-ER-A19K-01 1 53362086 53362086 G A ECHDC2 3'UTR 0.33 TCGA-ER-A19K-01 1 57420467 57420467 C T C8B Missense_Mutation p.G142E 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 1 76199254 76199254 G C ACADM Missense_Mutation p.E114Q 0.33 deleterious(0) probably_damaging(0.984) TCGA-ER-A19K-01 1 78958526 78958526 C T PTGFR Missense_Mutation p.S33L 0.23 deleterious(0.04) possibly_damaging(0.855) TCGA-ER-A19K-01 1 82447542 82447542 G T LPHN2 Missense_Mutation p.W1038L 0.06 deleterious(0) probably_damaging(0.999) TCGA-ER-A19K-01 1 98165049 98165049 C T DPYD Missense_Mutation p.E180K 0.16 tolerated(0.45) benign(0.003) TCGA-ER-A19K-01 20 29960770 29960770 C T DEFB118 Missense_Mutation p.P57S 0.25 tolerated(0.13) possibly_damaging(0.857) TCGA-ER-A19K-01 20 3556597 3556597 T G ATRN Splice_Site p.X738_splice 0.58 TCGA-ER-A19K-01 20 47630184 47630184 C T ARFGEF2 Silent p.F1334F 0.10 TCGA-ER-A19K-01 20 57766229 57766229 C T ZNF831 Missense_Mutation p.T52I 0.24 deleterious(0) possibly_damaging(0.738) TCGA-ER-A19K-01 20 57769735 57769735 C T ZNF831 Missense_Mutation p.P1221S 0.32 tolerated(0.17) possibly_damaging(0.494) TCGA-ER-A19K-01 20 62738147 62738147 C T NPBWR2 Missense_Mutation p.R13K 0.24 tolerated(0.7) benign(0.001) TCGA-ER-A19K-01 21 15882734 15882734 C T SAMSN1 Missense_Mutation p.R221Q 0.33 tolerated(0.07) probably_damaging(1) TCGA-ER-A19K-01 21 33076218 33076218 G A SCAF4 Missense_Mutation p.P61S 0.20 probably_damaging(0.991) TCGA-ER-A19K-01 21 41550888 41550888 G T DSCAM Silent p.P971P 0.31 TCGA-ER-A19K-01 22 16287318 16287318 G A POTEH Missense_Mutation p.P190S 0.30 tolerated(0.06) possibly_damaging(0.861) TCGA-ER-A19K-01 22 16449525 16449525 G A OR11H1 Missense_Mutation p.P94S 0.14 deleterious(0.01) possibly_damaging(0.907) TCGA-ER-A19K-01 22 19120078 19120078 G A TSSK2 3'UTR 0.46 TCGA-ER-A19K-01 22 29684658 29684658 C T EWSR1 Missense_Mutation p.S292F 0.28 tolerated(0.11) unknown(0) TCGA-ER-A19K-01 22 30951469 30951469 A T GAL3ST1 Missense_Mutation p.L248Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-ER-A19K-01 22 30951470 30951470 G A GAL3ST1 Silent p.L248L 0.38 TCGA-ER-A19K-01 22 31492806 31492806 C T SMTN Missense_Mutation p.T650I 0.41 deleterious(0) benign(0.15) TCGA-ER-A19K-01 22 31535929 31535929 C T PLA2G3 Missense_Mutation p.G138R 0.26 tolerated(0.16) benign(0.013) TCGA-ER-A19K-01 22 39772070 39772070 C T SYNGR1 Silent p.F117F 0.30 TCGA-ER-A19K-01 22 40068251 40068251 C T CACNA1I Silent p.V1529V 0.21 TCGA-ER-A19K-01 22 42293159 42293159 G T SREBF2 Missense_Mutation p.A867S 0.40 tolerated(0.23) possibly_damaging(0.769) TCGA-ER-A19K-01 22 42423026 42423026 C T WBP2NL Silent p.L257L 0.26 TCGA-ER-A19K-01 22 46654055 46654055 G A PKDREJ Missense_Mutation p.A1722V 0.31 tolerated(0.09) benign(0.105) TCGA-ER-A19K-01 2 103142776 103142776 G A SLC9A4 Missense_Mutation p.G670E 0.38 tolerated(0.88) benign(0.005) TCGA-ER-A19K-01 2 105883953 105883953 G A TGFBRAP1 Missense_Mutation p.P824S 0.30 deleterious(0.04) possibly_damaging(0.491) TCGA-ER-A19K-01 2 133402767 133402767 C T GPR39 Missense_Mutation p.S317F 0.32 tolerated(0.73) possibly_damaging(0.694) TCGA-ER-A19K-01 2 141267510 141267510 G A LRP1B Silent p.S2795S 0.31 TCGA-ER-A19K-01 2 152534666 152534666 C T NEB Silent p.G1097G 0.26 TCGA-ER-A19K-01 2 158115899 158115899 C T GALNT5 Silent p.P435P 0.35 TCGA-ER-A19K-01 2 166223779 166223779 G A SCN2A Silent p.G1191G 0.31 TCGA-ER-A19K-01 2 168101234 168101234 C T XIRP2 Missense_Mutation p.S1111L 0.42 possibly_damaging(0.856) TCGA-ER-A19K-01 2 179594515 179594515 G A TTN Silent p.S6155S 0.23 TCGA-ER-A19K-01 2 17962782 17962782 T C GEN1 Missense_Mutation p.V768A 0.25 tolerated(0.28) benign(0.004) TCGA-ER-A19K-01 2 182412551 182412551 G A CERKL Missense_Mutation p.S412F 0.30 deleterious(0.01) possibly_damaging(0.62) TCGA-ER-A19K-01 2 192700700 192700700 G A SDPR Silent p.S409S 0.38 TCGA-ER-A19K-01 2 196651860 196651860 G A DNAH7 Silent p.F3584F 0.23 TCGA-ER-A19K-01 2 21225588 21225588 G A APOB Missense_Mutation p.H4236Y 0.27 benign(0.193) TCGA-ER-A19K-01 2 212295760 212295760 C T ERBB4 Silent p.V851V 0.32 TCGA-ER-A19K-01 2 216965284 216965284 C T TMEM169 3'UTR 0.16 TCGA-ER-A19K-01 2 219920030 219920030 C T IHH Missense_Mutation p.E379K 0.35 tolerated(0.45) benign(0.131) TCGA-ER-A19K-01 2 222307622 222307622 G A EPHA4 Silent p.F667F 0.31 TCGA-ER-A19K-01 2 222429093 222429093 C T EPHA4 Missense_Mutation p.D61N 0.35 tolerated(0.05) probably_damaging(0.989) TCGA-ER-A19K-01 2 230450683 230450683 T A DNER Silent p.G246G 0.15 TCGA-ER-A19K-01 2 231175883 231175883 C T SP140 Silent p.L766L 0.16 TCGA-ER-A19K-01 2 234581310 234581310 C T UGT1A9 Missense_Mutation p.L244F 0.22 deleterious(0) probably_damaging(0.951) TCGA-ER-A19K-01 2 238283377 238283377 G A COL6A3 Silent p.I1119I 0.41 TCGA-ER-A19K-01 2 241530424 241530424 G A CAPN10 Missense_Mutation p.A156T 0.25 deleterious(0) probably_damaging(0.991) TCGA-ER-A19K-01 2 27500709 27500709 G A DNAJC5G Silent p.G67G 0.40 TCGA-ER-A19K-01 2 28772881 28772881 G A PLB1 Missense_Mutation p.S338N 0.23 tolerated(1) benign(0.001) TCGA-ER-A19K-01 2 32476326 32476326 G A NLRC4 Missense_Mutation p.L203F 0.24 tolerated(0.14) benign(0.076) TCGA-ER-A19K-01 2 43804250 43804250 G A THADA Silent p.A316A 0.28 TCGA-ER-A19K-01 2 48915099 48915099 G A LHCGR Missense_Mutation p.P613S 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 2 48956350 48956350 C T LHCGR Missense_Mutation p.D84N 0.29 tolerated(0.31) benign(0.184) TCGA-ER-A19K-01 2 62449892 62449892 C T B3GNT2 Silent p.V179V 0.43 TCGA-ER-A19K-01 2 87042588 87042588 G A CD8B 3'Flank 0.24 TCGA-ER-A19K-01 2 90249254 90249254 C T IGKV1D-43 Silent p.I70I 0.22 TCGA-ER-A19K-01 2 96852419 96852419 G A STARD7 3'UTR 0.24 TCGA-ER-A19K-01 2 98427651 98427651 A G TMEM131 Silent p.L636L 0.29 TCGA-ER-A19K-01 2 99149941 99149941 C G INPP4A Missense_Mutation p.Q85E 0.17 tolerated(0.11) probably_damaging(0.992) TCGA-ER-A19K-01 3 11402163 11402163 G T ATG7 Missense_Mutation p.A530S 0.25 tolerated(0.66) benign(0.003) TCGA-ER-A19K-01 3 121724178 121724178 C T ILDR1 Missense_Mutation p.E98K 0.54 tolerated(0.46) probably_damaging(0.98) TCGA-ER-A19K-01 3 129218838 129218838 G A IFT122 Missense_Mutation p.V819M 0.43 deleterious(0) possibly_damaging(0.796) TCGA-ER-A19K-01 3 138413734 138413734 G A PIK3CB Nonsense_Mutation p.Q596* 0.18 TCGA-ER-A19K-01 3 141274726 141274726 C T RASA2 Missense_Mutation p.P219L 0.28 deleterious(0.02) benign(0.109) TCGA-ER-A19K-01 3 151012384 151012384 G A GPR87 Missense_Mutation p.A217V 0.28 tolerated(0.86) benign(0.004) TCGA-ER-A19K-01 3 168845645 168845645 G A MECOM Missense_Mutation p.P149S 0.23 deleterious(0.04) benign(0.074) TCGA-ER-A19K-01 3 172025210 172025210 C T FNDC3B Silent p.T373T 0.38 TCGA-ER-A19K-01 3 179470094 179470094 C T USP13 Silent p.F577F 0.12 TCGA-ER-A19K-01 3 184008402 184008402 C T ECE2 Silent p.I689I 0.25 TCGA-ER-A19K-01 3 186459360 186459360 G A KNG1 Missense_Mutation p.R392Q 0.26 tolerated(0.53) benign(0.001) TCGA-ER-A19K-01 3 193174907 193174907 G A ATP13A4 Silent p.F599F 0.19 TCGA-ER-A19K-01 3 195022715 195022715 G A ACAP2 Silent p.I435I 0.25 TCGA-ER-A19K-01 3 195968927 195968927 G A PCYT1A Silent p.I200I 0.19 TCGA-ER-A19K-01 3 2967331 2967331 C T CNTN4 Missense_Mutation p.S409L 0.30 deleterious(0.01) possibly_damaging(0.74) TCGA-ER-A19K-01 3 38798212 38798212 C T SCN10A Missense_Mutation p.E415K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19K-01 3 39230087 39230087 C T XIRP1 Missense_Mutation p.D284N 0.15 tolerated(0.07) probably_damaging(0.995) TCGA-ER-A19K-01 3 39307923 39307923 G A CX3CR1 Silent p.I58I 0.31 TCGA-ER-A19K-01 3 46401384 46401384 C T CCR2 3'UTR 0.41 TCGA-ER-A19K-01 3 4856869 4856869 G A ITPR1 Missense_Mutation p.E2597K 0.26 deleterious(0) probably_damaging(0.993) TCGA-ER-A19K-01 3 49273978 49273978 C T CCDC36 Intron 0.42 TCGA-ER-A19K-01 3 49689186 49689186 C T BSN Missense_Mutation p.P733S 0.29 unknown(0) TCGA-ER-A19K-01 3 52301026 52301026 G A WDR82 Missense_Mutation p.R90C 0.30 deleterious(0) benign(0.301) TCGA-ER-A19K-01 3 54958664 54958664 C T LRTM1 Missense_Mutation p.E196K 0.32 deleterious(0) possibly_damaging(0.904) TCGA-ER-A19K-01 3 81699036 81699036 G A GBE1 Missense_Mutation p.R156C 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 3 99513797 99513797 G A COL8A1 Missense_Mutation p.G351E 0.22 deleterious(0) unknown(0) TCGA-ER-A19K-01 4 100208155 100208155 G A ADH1A Intron 0.33 TCGA-ER-A19K-01 4 104577417 104577417 G A TACR3 Silent p.L274L 0.30 TCGA-ER-A19K-01 4 104640803 104640803 C T TACR3 Nonsense_Mutation p.W10* 0.19 TCGA-ER-A19K-01 4 113353293 113353293 C T ALPK1 Missense_Mutation p.P864S 0.15 tolerated(0.46) benign(0.003) TCGA-ER-A19K-01 4 120192980 120192980 C T USP53 Silent p.S655S 0.23 TCGA-ER-A19K-01 4 123665154 123665154 G A BBS12 Missense_Mutation p.E703K 0.26 tolerated(0.69) benign(0.004) TCGA-ER-A19K-01 4 126242082 126242082 G A FAT4 Missense_Mutation p.E1506K 0.35 probably_damaging(0.95) TCGA-ER-A19K-01 4 146617735 146617735 C T C4orf51 Silent p.A86A 0.31 TCGA-ER-A19K-01 4 148441023 148441023 T G EDNRA Silent p.P147P 0.27 TCGA-ER-A19K-01 4 155505343 155505343 G A FGA Missense_Mutation p.S845F 0.29 deleterious(0.02) benign(0.134) TCGA-ER-A19K-01 4 164394100 164394100 C T TKTL2 Missense_Mutation p.G263R 0.31 deleterious(0) possibly_damaging(0.892) TCGA-ER-A19K-01 4 16510269 16510269 C T LDB2 Silent p.R260R 0.20 TCGA-ER-A19K-01 4 166924563 166924563 G A TLL1 Missense_Mutation p.R218Q 0.28 deleterious(0) possibly_damaging(0.903) TCGA-ER-A19K-01 4 175896782 175896782 C T ADAM29 Missense_Mutation p.P36S 0.41 deleterious(0) probably_damaging(0.996) TCGA-ER-A19K-01 4 183664516 183664516 C T TENM3 Silent p.F1191F 0.24 TCGA-ER-A19K-01 4 185074732 185074732 C T ENPP6 Silent p.R132R 0.21 TCGA-ER-A19K-01 4 187455191 187455191 C T MTNR1A Silent p.R235R 0.30 TCGA-ER-A19K-01 4 39409207 39409207 C T KLB Missense_Mutation p.T213I 0.20 deleterious(0.04) benign(0.347) TCGA-ER-A19K-01 4 41621226 41621226 C T LIMCH1 Missense_Mutation p.S235F 0.24 deleterious(0) possibly_damaging(0.602) TCGA-ER-A19K-01 4 42145820 42145820 C T BEND4 Missense_Mutation p.D227N 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.587) TCGA-ER-A19K-01 4 52861452 52861452 G A LRRC66 Missense_Mutation p.S579F 0.23 tolerated(0.07) possibly_damaging(0.491) TCGA-ER-A19K-01 4 55129930 55129930 C T PDGFRA Missense_Mutation p.P155L 0.32 deleterious(0) probably_damaging(0.979) TCGA-ER-A19K-01 4 68500030 68500030 G A UBA6 Missense_Mutation p.S648F 0.29 tolerated(0.13) benign(0.012) TCGA-ER-A19K-01 4 68938200 68938200 C T TMPRSS11F Missense_Mutation p.D119N 0.19 deleterious(0.04) possibly_damaging(0.542) TCGA-ER-A19K-01 4 74450947 74450947 C T RASSF6 Missense_Mutation p.E205K 0.30 tolerated(0.26) benign(0.002) TCGA-ER-A19K-01 4 79417986 79417986 G A FRAS1 Missense_Mutation p.D2996N 0.29 probably_damaging(0.966) TCGA-ER-A19K-01 4 90171324 90171324 G A GPRIN3 5'UTR 0.37 TCGA-ER-A19K-01 4 90816646 90816646 G A MMRN1 Missense_Mutation p.G175E 0.18 tolerated(0.06) benign(0.093) TCGA-ER-A19K-01 4 945483 945483 C T TMEM175 Missense_Mutation p.T119I 0.26 tolerated(1) benign(0.034) TCGA-ER-A19K-01 5 1221985 1221985 C T SLC6A19 Missense_Mutation p.S624F 0.19 deleterious(0) probably_damaging(0.95) TCGA-ER-A19K-01 5 1266600 1266600 G A TERT Missense_Mutation p.T878I 0.20 tolerated(0.09) benign(0.285) TCGA-ER-A19K-01 5 1278770 1278770 C T TERT Missense_Mutation p.A758T 0.47 tolerated(0.24) benign(0.005) TCGA-ER-A19K-01 5 128977608 128977608 C T ADAMTS19 Silent p.T603T 0.19 TCGA-ER-A19K-01 5 132537632 132537632 G A FSTL4 Missense_Mutation p.H607Y 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19K-01 5 134223703 134223703 C T TXNDC15 Missense_Mutation p.P141L 0.16 tolerated(0.1) benign(0.282) TCGA-ER-A19K-01 5 134332199 134332199 C T CATSPER3 Silent p.I163I 0.31 TCGA-ER-A19K-01 5 137235267 137235267 G A PKD2L2 Missense_Mutation p.R196Q 0.27 tolerated(0.09) benign(0.009) TCGA-ER-A19K-01 5 13766162 13766162 C T DNAH5 Missense_Mutation p.E3342K 0.17 benign(0.01) TCGA-ER-A19K-01 5 140167316 140167316 G A PCDHA1 Missense_Mutation p.D481N 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19K-01 5 140789491 140789491 C T PCDHGB6 Silent p.F574F 0.38 TCGA-ER-A19K-01 5 176026397 176026397 G A GPRIN1 Missense_Mutation p.P147S 0.24 tolerated(0.07) benign(0.015) TCGA-ER-A19K-01 5 178504160 178504160 C T ZNF354C Silent p.T81T 0.23 TCGA-ER-A19K-01 5 19473324 19473324 G A CDH18 3'UTR 0.41 TCGA-ER-A19K-01 5 35628589 35628589 C T SPEF2 Missense_Mutation p.S29F 0.24 deleterious(0) probably_damaging(0.989) TCGA-ER-A19K-01 5 40835319 40835319 G A RPL37 5'UTR 0.45 TCGA-ER-A19K-01 5 41005013 41005013 C T MROH2B Missense_Mutation p.E1292K 0.14 deleterious(0.04) possibly_damaging(0.891) TCGA-ER-A19K-01 5 41143030 41143030 C T C6 Missense_Mutation p.G901E 0.12 tolerated(1) benign(0.016) TCGA-ER-A19K-01 5 5239386 5239386 C T ADAMTS16 Silent p.N759N 0.33 TCGA-ER-A19K-01 5 66480183 66480183 G A CD180 Missense_Mutation p.S163F 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-ER-A19K-01 6 110745996 110745996 G A SLC22A16 3'UTR 0.23 TCGA-ER-A19K-01 6 128134715 128134715 G A THEMIS Silent p.I357I 0.32 TCGA-ER-A19K-01 6 130762578 130762578 C T TMEM200A Silent p.S337S 0.38 TCGA-ER-A19K-01 6 136878838 136878838 G A MAP3K5 3'UTR 0.38 TCGA-ER-A19K-01 6 137329747 137329747 C T IL20RA Missense_Mutation p.R238K 0.20 deleterious(0.05) benign(0.145) TCGA-ER-A19K-01 6 137466718 137466718 G A IL22RA2 3'UTR 0.46 TCGA-ER-A19K-01 6 138608024 138608024 G A KIAA1244 Missense_Mutation p.R919Q 0.34 tolerated(0.3) probably_damaging(0.997) TCGA-ER-A19K-01 6 159463193 159463193 C T TAGAP Missense_Mutation p.E78K 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-ER-A19K-01 6 25779481 25779481 C T SLC17A4 3'UTR 0.31 TCGA-ER-A19K-01 6 29012292 29012292 T G OR2W1 Missense_Mutation p.I221L 0.25 deleterious(0) possibly_damaging(0.447) TCGA-ER-A19K-01 6 29080287 29080287 C T OR2J3 Missense_Mutation p.S207F 0.16 tolerated(0.09) benign(0.018) TCGA-ER-A19K-01 6 29797602 29797602 C T HLA-G Missense_Mutation p.S302F 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.554) TCGA-ER-A19K-01 6 31660712 31660712 G A ABHD16A Intron 0.39 TCGA-ER-A19K-01 6 33136349 33136349 C T COL11A2 Missense_Mutation p.G1217R 0.56 unknown(0) TCGA-ER-A19K-01 6 33384428 33384428 C T CUTA Silent p.%3D 0.41 TCGA-ER-A19K-01 6 38883070 38883070 G A DNAH8 Missense_Mutation p.E3136K 0.25 possibly_damaging(0.593) TCGA-ER-A19K-01 6 41557871 41557871 G A FOXP4 Silent p.R440R 0.30 TCGA-ER-A19K-01 6 46135775 46135775 G A ENPP5 Silent p.N75N 0.42 TCGA-ER-A19K-01 6 70040418 70040418 G A BAI3 Missense_Mutation p.G1019E 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 6 74110081 74110081 G A DDX43 Missense_Mutation p.G144E 0.23 tolerated(1) benign(0.017) TCGA-ER-A19K-01 6 84025057 84025057 C T ME1 Missense_Mutation p.D226N 0.29 deleterious(0.03) benign(0.281) TCGA-ER-A19K-01 6 84765134 84765134 G A MRAP2 Missense_Mutation p.V33I 0.26 tolerated(0.06) benign(0.183) TCGA-ER-A19K-01 6 89600286 89600286 G A RNGTT Missense_Mutation p.S275F 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 6 96651418 96651418 G A FUT9 Silent p.Q129Q 0.34 TCGA-ER-A19K-01 7 100675084 100675084 C T MUC17 Silent p.F129F 0.34 TCGA-ER-A19K-01 7 100682054 100682054 G A MUC17 Missense_Mutation p.E2453K 0.35 possibly_damaging(0.824) TCGA-ER-A19K-01 7 103141318 103141318 G A RELN Silent p.I2847I 0.19 TCGA-ER-A19K-01 7 117397991 117397991 G A CTTNBP2 Missense_Mutation p.A1069V 0.38 deleterious(0.02) benign(0.029) TCGA-ER-A19K-01 7 131982865 131982865 G A PLXNA4 Silent p.I496I 0.15 TCGA-ER-A19K-01 7 138583700 138583700 C T KIAA1549 Splice_Site p.X1283_splice 0.18 TCGA-ER-A19K-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-ER-A19K-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.52 deleterious(0) possibly_damaging(0.838) TCGA-ER-A19K-01 7 141799434 141799434 G A MGAM Missense_Mutation p.G1695R 0.21 deleterious(0.05) possibly_damaging(0.723) TCGA-ER-A19K-01 7 142008598 142008598 C T TRBV3-1 Missense_Mutation p.S24F 0.67 tolerated(0.12) benign(0.012) TCGA-ER-A19K-01 7 142180902 142180902 C T TRBV6-5 Missense_Mutation p.G17S 0.45 deleterious(0.02) benign(0.244) TCGA-ER-A19K-01 7 142962155 142962155 C T GSTK1 Silent p.S118S 0.09 TCGA-ER-A19K-01 7 143096020 143096020 C T EPHA1 Missense_Mutation p.R337Q 0.46 tolerated(0.5) benign(0.017) TCGA-ER-A19K-01 7 147183107 147183107 G A CNTNAP2 Missense_Mutation p.G584E 0.13 deleterious(0) probably_damaging(0.939) TCGA-ER-A19K-01 7 149129613 149129613 G A ZNF777 Missense_Mutation p.R584W 0.51 deleterious(0.02) probably_damaging(0.993) TCGA-ER-A19K-01 7 150171193 150171193 G A GIMAP8 Missense_Mutation p.G259E 0.42 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 7 151261175 151261175 C T PRKAG2 Missense_Mutation p.V525I 0.13 deleterious(0.05) benign(0.329) TCGA-ER-A19K-01 7 154745976 154745976 T G PAXIP1 Missense_Mutation p.Q937P 0.16 deleterious(0.01) unknown(0) TCGA-ER-A19K-01 7 157985081 157985081 G A PTPRN2 Nonsense_Mutation p.Q163* 0.55 TCGA-ER-A19K-01 7 157985082 157985082 G A PTPRN2 Silent p.S162S 0.55 TCGA-ER-A19K-01 7 23775395 23775395 C T STK31 Missense_Mutation p.P241L 0.20 tolerated(0.06) possibly_damaging(0.533) TCGA-ER-A19K-01 7 2578060 2578060 G A BRAT1 Silent p.F703F 0.26 TCGA-ER-A19K-01 7 27147572 27147572 C T HOXA3 Missense_Mutation p.G432R 0.28 deleterious(0) probably_damaging(0.995) TCGA-ER-A19K-01 7 37907456 37907456 C T NME8 Silent p.V258V 0.55 TCGA-ER-A19K-01 7 44283126 44283126 G A CAMK2B Missense_Mutation p.P139S 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A19K-01 7 44573095 44573095 G A NPC1L1 Missense_Mutation p.L782F 0.24 tolerated(0.67) benign(0.013) TCGA-ER-A19K-01 7 47876576 47876576 G A PKD1L1 Silent p.S1962S 0.18 TCGA-ER-A19K-01 7 72657244 72657244 G T GTF2IRD2P1 RNA 0.24 TCGA-ER-A19K-01 7 82451668 82451668 C T PCLO Intron 0.45 TCGA-ER-A19K-01 7 83032010 83032010 C T SEMA3E Missense_Mutation p.E361K 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A19K-01 7 87179797 87179797 C T ABCB1 Missense_Mutation p.R404Q 0.22 deleterious(0) probably_damaging(0.983) TCGA-ER-A19K-01 7 91726016 91726016 C T AKAP9 Missense_Mutation p.S3248L 0.47 probably_damaging(0.998) TCGA-ER-A19K-01 7 96746946 96746946 C T ACN9 5'UTR 0.33 TCGA-ER-A19K-01 7 99315203 99315203 C T CYP3A7 Nonsense_Mutation p.W126* 0.43 TCGA-ER-A19K-01 7 99621198 99621198 C T ZKSCAN1 Silent p.I23I 0.22 TCGA-ER-A19K-01 7 99799858 99799858 G A STAG3 Missense_Mutation p.D820N 0.47 tolerated(0.06) benign(0.002) TCGA-ER-A19K-01 8 105263284 105263284 G A RIMS2 Missense_Mutation p.G1242R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19K-01 8 105263285 105263285 G A RIMS2 Missense_Mutation p.G1242E 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19K-01 8 110455963 110455963 C T PKHD1L1 Silent p.P1541P 0.15 TCGA-ER-A19K-01 8 133920538 133920538 G A TG Missense_Mutation p.V1319I 0.31 tolerated(0.91) benign(0.031) TCGA-ER-A19K-01 8 139164359 139164359 C G FAM135B Missense_Mutation p.D787H 0.27 deleterious(0) benign(0.396) TCGA-ER-A19K-01 8 139763734 139763734 G T COL22A1 Silent p.G684G 0.25 TCGA-ER-A19K-01 8 141567195 141567195 G A AGO2 Missense_Mutation p.P340L 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 8 144403526 144403526 C T TOP1MT Missense_Mutation p.D331N 0.30 deleterious(0.01) benign(0.21) TCGA-ER-A19K-01 8 15508241 15508241 C T TUSC3 Missense_Mutation p.S115F 0.26 deleterious(0) probably_damaging(0.92) TCGA-ER-A19K-01 8 19689597 19689597 C T INTS10 Silent p.F451F 0.29 TCGA-ER-A19K-01 8 2017587 2017587 C T MYOM2 Missense_Mutation p.P255L 0.27 tolerated(0.27) benign(0.04) TCGA-ER-A19K-01 8 24324428 24324428 C T ADAM7 Missense_Mutation p.S169F 0.21 deleterious(0) probably_damaging(0.955) TCGA-ER-A19K-01 8 26627970 26627970 G A ADRA1A Missense_Mutation p.A366V 0.25 tolerated(0.12) benign(0.003) TCGA-ER-A19K-01 8 2944783 2944783 G A CSMD1 Missense_Mutation p.P2437L 0.21 benign(0.009) TCGA-ER-A19K-01 8 3611552 3611552 C T CSMD1 Missense_Mutation p.M277I 0.25 benign(0.001) TCGA-ER-A19K-01 8 38021196 38021196 C G LSM1 Missense_Mutation p.E132Q 0.21 deleterious(0.02) possibly_damaging(0.47) TCGA-ER-A19K-01 8 41550174 41550174 C T ANK1 Missense_Mutation p.D1325N 0.25 deleterious(0.01) possibly_damaging(0.891) TCGA-ER-A19K-01 8 41832293 41832293 A G KAT6A Missense_Mutation p.F471L 0.24 benign(0.008) TCGA-ER-A19K-01 8 42585792 42585792 C T CHRNB3 Missense_Mutation p.S102F 0.26 tolerated(0.74) benign(0.068) TCGA-ER-A19K-01 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.44 deleterious(0) probably_damaging(0.989) TCGA-ER-A19K-01 8 70570778 70570778 C T SULF1 3'UTR 0.32 TCGA-ER-A19K-01 8 95718223 95718223 T G ESRP1 3'UTR 0.29 TCGA-ER-A19K-01 9 104125180 104125180 G A BAAT Missense_Mutation p.P263S 0.32 tolerated(0.43) benign(0.001) TCGA-ER-A19K-01 9 104432886 104432886 C T GRIN3A Missense_Mutation p.G603E 0.23 deleterious(0.04) probably_damaging(1) TCGA-ER-A19K-01 9 107361157 107361157 C T OR13C5 Missense_Mutation p.E180K 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A19K-01 9 114476800 114476800 C T C9orf84 Silent p.K716K 0.20 TCGA-ER-A19K-01 9 114688773 114688773 G T UGCG Missense_Mutation p.E185D 0.22 deleterious(0.04) benign(0.327) TCGA-ER-A19K-01 9 116045468 116045468 G T PRPF4 Missense_Mutation p.W180C 0.24 deleterious(0.01) possibly_damaging(0.497) TCGA-ER-A19K-01 9 118982354 118982354 C T PAPPA Missense_Mutation p.T686M 0.25 tolerated(0.16) benign(0) TCGA-ER-A19K-01 9 119977015 119977015 G A ASTN2 Missense_Mutation p.L213F 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-ER-A19K-01 9 131760848 131760848 G A NUP188 Missense_Mutation p.R1154H 0.29 tolerated(0.1) benign(0.004) TCGA-ER-A19K-01 9 139818388 139818388 C T TRAF2 Missense_Mutation p.S408F 0.21 deleterious(0) probably_damaging(0.998) TCGA-ER-A19K-01 9 139912350 139912350 G A ABCA2 Silent p.F700F 0.31 TCGA-ER-A19K-01 9 140414475 140414475 G A PNPLA7 Silent p.L326L 0.25 TCGA-ER-A19K-01 9 27029056 27029056 T A IFT74 Missense_Mutation p.F336L 0.44 tolerated(0.71) benign(0) TCGA-ER-A19K-01 9 78907158 78907158 G A PCSK5 Missense_Mutation p.G1051E 0.20 tolerated(0.94) benign(0.17) TCGA-ER-A19K-01 9 79835234 79835234 G T VPS13A Missense_Mutation p.M308I 0.28 deleterious(0) probably_damaging(0.995) TCGA-ER-A19K-01 9 80040567 80040567 G A GNA14 Missense_Mutation p.S263L 0.21 deleterious(0) benign(0.315) TCGA-ER-A19K-01 9 84606203 84606203 C T SPATA31D1 Missense_Mutation p.S273L 0.29 deleterious(0) possibly_damaging(0.511) TCGA-ER-A19K-01 9 84609396 84609396 C T SPATA31D1 Silent p.S1337S 0.15 TCGA-ER-A19K-01 9 8470993 8470993 A G PTPRD Splice_Site p.X1168_splice 0.25 TCGA-ER-A19K-01 9 8499680 8499680 G A PTPRD Silent p.P763P 0.24 TCGA-ER-A19K-01 9 90501461 90501461 G A SPATA31E1 Missense_Mutation p.G687S 0.22 tolerated(1) benign(0.022) TCGA-ER-A19K-01 9 91978413 91978413 C T SECISBP2 3'Flank 0.37 TCGA-ER-A19K-01 X 104464777 104464777 G A TEX13A Missense_Mutation p.S102L 0.33 tolerated(0.14) benign(0.106) TCGA-ER-A19K-01 X 110971527 110971527 G A ALG13 Missense_Mutation p.E788K 0.17 tolerated(0.07) benign(0.026) TCGA-ER-A19K-01 X 115568978 115568978 G A SLC6A14 Silent p.E23E 0.27 TCGA-ER-A19K-01 X 120009239 120009239 C T CT47B1 Missense_Mutation p.E96K 0.32 tolerated(0.16) probably_damaging(0.981) TCGA-ER-A19K-01 X 132352192 132352192 G A TFDP3 Silent p.S32S 0.40 TCGA-ER-A19K-01 X 134992694 134992694 C T SAGE1 Missense_Mutation p.S662F 0.19 deleterious(0) probably_damaging(0.969) TCGA-ER-A19K-01 X 134992695 134992695 C T SAGE1 Silent p.S662S 0.19 TCGA-ER-A19K-01 X 135488088 135488088 G A GPR112 Silent p.R2964R 0.23 TCGA-ER-A19K-01 X 136113428 136113428 G A GPR101 Missense_Mutation p.P136S 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 X 140953359 140953359 G A MAGEC3 Missense_Mutation p.D76N 0.26 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-ER-A19K-01 X 14913434 14913434 T A MOSPD2 Silent p.L80L 0.27 TCGA-ER-A19K-01 X 151869662 151869662 C T MAGEA6 Missense_Mutation p.H118Y 0.32 deleterious(0.01) possibly_damaging(0.837) TCGA-ER-A19K-01 X 153053002 153053002 G A IDH3G Silent p.S197S 0.19 TCGA-ER-A19K-01 X 153595823 153595823 C T FLNA Silent p.K270K 0.24 TCGA-ER-A19K-01 X 154754275 154754275 G A TMLHE Missense_Mutation p.T67I 0.34 tolerated(0.06) benign(0.008) TCGA-ER-A19K-01 X 17152027 17152027 G A REPS2 Silent p.K553K 0.25 TCGA-ER-A19K-01 X 17744574 17744574 G A NHS Missense_Mutation p.G762E 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A19K-01 X 19031830 19031830 G A GPR64 Missense_Mutation p.T358I 0.27 tolerated(0.24) benign(0.003) TCGA-ER-A19K-01 X 24229378 24229378 C T ZFX Missense_Mutation p.S768F 0.29 deleterious(0) probably_damaging(0.999) TCGA-ER-A19K-01 X 26157474 26157474 G A MAGEB18 Silent p.T124T 0.40 TCGA-ER-A19K-01 X 27999487 27999487 G A DCAF8L1 5'UTR 0.26 TCGA-ER-A19K-01 X 30260907 30260907 G A MAGEB4 Missense_Mutation p.E219K 0.27 tolerated(0.19) benign(0.192) TCGA-ER-A19K-01 X 37029243 37029243 G A FAM47C Silent p.G920G 0.18 TCGA-ER-A19K-01 X 41555639 41555639 G A GPR34 Silent p.R251R 0.31 TCGA-ER-A19K-01 X 73064192 73064192 C T XIST RNA 0.23 TCGA-ER-A19K-01 X 73071335 73071335 G A XIST RNA 0.33 TCGA-ER-A19K-01 X 76849222 76849222 C T ATRX Silent p.G2018G 0.29 TCGA-ER-A19K-01 X 77378785 77378785 G C PGK1 Missense_Mutation p.V284L 0.27 deleterious(0.02) benign(0.002) TCGA-ER-A19K-01 X 77528585 77528585 G A CYSLTR1 Missense_Mutation p.S220L 0.32 deleterious(0.05) benign(0.297) TCGA-ER-A19K-01 X 84614582 84614582 C T POF1B Silent p.R137R 0.30 TCGA-ER-A19L-06 10 20432323 20432323 C T PLXDC2 Missense_Mutation p.S214L 0.81 deleterious(0) probably_damaging(0.999) TCGA-ER-A19L-06 10 20466284 20466284 C T PLXDC2 Missense_Mutation p.P336L 0.81 tolerated(0.43) benign(0.426) TCGA-ER-A19L-06 10 85981769 85981769 G A LRIT2 Silent p.S520S 0.68 TCGA-ER-A19L-06 11 100126527 100126527 G A CNTN5 Missense_Mutation p.E681K 0.74 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19L-06 11 105795269 105795269 G A GRIA4 Missense_Mutation p.D541N 0.78 tolerated(0.37) possibly_damaging(0.901) TCGA-ER-A19L-06 11 17547910 17547910 G C USH1C Missense_Mutation p.R220G 0.60 deleterious(0.04) possibly_damaging(0.567) TCGA-ER-A19L-06 11 35454298 35454298 G A PAMR1 Missense_Mutation p.S607F 0.78 tolerated(0.08) benign(0.016) TCGA-ER-A19L-06 11 56510999 56510999 G A OR9G4 Silent p.L97L 0.38 TCGA-ER-A19L-06 13 39550878 39550878 G A STOML3 Silent p.L37L 0.38 TCGA-ER-A19L-06 14 31535384 31535384 T C AP4S1 5'UTR 0.61 TCGA-ER-A19L-06 14 52507401 52507401 G A NID2 Missense_Mutation p.P665L 0.40 deleterious(0) probably_damaging(0.99) TCGA-ER-A19L-06 14 56746398 56746398 T G PELI2 Missense_Mutation p.I71S 0.48 tolerated(0.09) benign(0.213) TCGA-ER-A19L-06 15 31862357 31862357 C T OTUD7A Silent p.Q65Q 0.47 TCGA-ER-A19L-06 15 51676081 51676081 G A GLDN Missense_Mutation p.G178E 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19L-06 16 9923387 9923387 A T GRIN2A Missense_Mutation p.W634R 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A19L-06 17 18022636 18022636 C T MYO15A Silent p.F174F 0.47 TCGA-ER-A19L-06 17 29220572 29220572 G A ATAD5 Silent p.K1567K 0.32 TCGA-ER-A19L-06 17 4575136 4575136 G A PELP1 Silent p.P1050P 0.31 TCGA-ER-A19L-06 17 56356552 56356552 G A MPO Silent p.I234I 0.57 TCGA-ER-A19L-06 17 7251257 7251257 T C ACAP1 Missense_Mutation p.F454L 0.15 tolerated(0.37) probably_damaging(0.999) TCGA-ER-A19L-06 17 73567827 73567827 C T LLGL2 Silent p.A752A 0.75 TCGA-ER-A19L-06 17 79409801 79409801 C T RP11-1055B8.7 Missense_Mutation p.P476S 0.50 probably_damaging(0.998) TCGA-ER-A19L-06 19 10246815 10246815 G A DNMT1 Silent p.P1546P 0.45 TCGA-ER-A19L-06 19 1578395 1578395 C G MBD3 Missense_Mutation p.D274H 0.47 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-ER-A19L-06 19 1632113 1632113 G A TCF3 Silent p.T74T 0.30 TCGA-ER-A19L-06 19 30936347 30936347 G A ZNF536 Missense_Mutation p.M626I 0.36 tolerated(0.12) benign(0) TCGA-ER-A19L-06 19 50657868 50657868 G A IZUMO2 Silent p.V204V 0.41 TCGA-ER-A19L-06 1 120293428 120293428 G C HMGCS2 Silent p.V508V 0.26 TCGA-ER-A19L-06 1 170959135 170959135 C T MROH9 Missense_Mutation p.P340L 0.49 deleterious(0) probably_damaging(1) TCGA-ER-A19L-06 20 45130161 45130161 C A ZNF334 Missense_Mutation p.G606V 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A19L-06 20 50400980 50400980 G A SALL4 Missense_Mutation p.P996S 0.28 tolerated(0.1) possibly_damaging(0.764) TCGA-ER-A19L-06 20 51871926 51871926 C T TSHZ2 Silent p.A643A 0.57 TCGA-ER-A19L-06 22 46657077 46657077 A T PKDREJ Missense_Mutation p.S715T 0.29 tolerated(0.06) possibly_damaging(0.788) TCGA-ER-A19L-06 2 102785060 102785060 G A IL1R1 Missense_Mutation p.E220K 0.36 tolerated(0.72) benign(0.002) TCGA-ER-A19L-06 2 108477279 108477279 T A RGPD4 Missense_Mutation p.Y606N 0.38 deleterious(0) possibly_damaging(0.86) TCGA-ER-A19L-06 2 233344912 233344912 C A ECEL1 Missense_Mutation p.C760F 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A19L-06 2 233834931 233834931 C T NGEF Missense_Mutation p.E126K 0.42 tolerated_low_confidence(0.63) benign(0) TCGA-ER-A19L-06 2 48586205 48586205 T C FOXN2 Missense_Mutation p.L186S 0.40 deleterious(0) possibly_damaging(0.907) TCGA-ER-A19L-06 3 42679557 42679557 A C NKTR Missense_Mutation p.K787N 0.45 deleterious_low_confidence(0) benign(0.431) TCGA-ER-A19L-06 4 178281684 178281684 C T NEIL3 Silent p.G496G 0.74 TCGA-ER-A19L-06 4 184607856 184607856 A T TRAPPC11 Silent p.P616P 0.31 TCGA-ER-A19L-06 4 20734378 20734378 C T KCNIP4 Missense_Mutation p.D190N 0.41 deleterious(0.02) probably_damaging(0.949) TCGA-ER-A19L-06 4 71275127 71275127 C G PROL1 Missense_Mutation p.P28A 0.70 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-ER-A19L-06 4 79793862 79793862 C T BMP2K Missense_Mutation p.P568L 0.76 deleterious_low_confidence(0.02) unknown(0) TCGA-ER-A19L-06 4 88767038 88767038 G A MEPE Missense_Mutation p.D340N 0.84 tolerated(0.06) benign(0.119) TCGA-ER-A19L-06 5 10992701 10992701 G A CTNND2 Missense_Mutation p.S1058F 0.47 deleterious(0.02) possibly_damaging(0.897) TCGA-ER-A19L-06 5 167915736 167915736 C T RARS Nonsense_Mutation p.R59* 0.39 TCGA-ER-A19L-06 5 178138979 178138979 C T ZNF354A 3'UTR 0.45 TCGA-ER-A19L-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.76 tolerated(0.31) possibly_damaging(0.72) TCGA-ER-A19L-06 5 32058048 32058048 C T PDZD2 Missense_Mutation p.P680L 0.60 deleterious(0) probably_damaging(1) TCGA-ER-A19L-06 6 137245645 137245645 C G SLC35D3 Silent p.G354G 0.48 TCGA-ER-A19L-06 6 143093699 143093699 G A HIVEP2 Missense_Mutation p.S726F 0.50 deleterious(0.03) benign(0.068) TCGA-ER-A19L-06 6 151939193 151939193 C T CCDC170 Nonsense_Mutation p.Q687* 0.44 TCGA-ER-A19L-06 6 31759398 31759398 G A VARS Silent p.S363S 0.34 TCGA-ER-A19L-06 6 31759399 31759399 G A VARS Missense_Mutation p.S363F 0.34 tolerated(0.07) possibly_damaging(0.701) TCGA-ER-A19L-06 6 63990777 63990777 G A LGSN Missense_Mutation p.P227S 0.36 tolerated(0.17) benign(0.009) TCGA-ER-A19L-06 7 113519545 113519545 G A PPP1R3A Silent p.F534F 0.48 TCGA-ER-A19L-06 7 143141130 143141130 C T TAS2R60 Silent p.F195F 0.39 TCGA-ER-A19L-06 7 143141184 143141184 G A TAS2R60 Missense_Mutation p.M213I 0.36 tolerated(0.46) benign(0.123) TCGA-ER-A19L-06 7 150389632 150389632 C T GIMAP2 Silent p.D86D 0.49 TCGA-ER-A19L-06 7 27222434 27222434 G A HOXA11 Missense_Mutation p.S308L 0.35 deleterious(0) benign(0.278) TCGA-ER-A19L-06 7 34698172 34698172 G A NPSR1 Splice_Site p.X49_splice 0.47 TCGA-ER-A19L-06 8 133823402 133823402 C T PHF20L1 Intron 0.77 TCGA-ER-A19L-06 8 14412245 14412245 G A SGCZ Missense_Mutation p.T77I 0.42 deleterious(0.01) benign(0.44) TCGA-ER-A19L-06 8 144671200 144671200 C T EEF1D Missense_Mutation p.G351D 0.16 tolerated(0.27) benign(0.067) TCGA-ER-A19L-06 8 23709033 23709033 G A STC1 Silent p.F91F 0.37 TCGA-ER-A19L-06 8 68972998 68972998 T C PREX2 Silent p.N441N 0.16 TCGA-ER-A19L-06 9 1056913 1056913 G A DMRT2 Silent p.T442T 0.85 TCGA-ER-A19L-06 9 14841567 14841567 G A FREM1 Missense_Mutation p.L587F 0.73 tolerated(0.05) benign(0.182) TCGA-ER-A19L-06 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.54 TCGA-ER-A19L-06 9 40702792 40702792 C T SPATA31A3 Missense_Mutation p.S150F 0.23 tolerated(0.11) probably_damaging(0.919) TCGA-ER-A19L-06 9 40702793 40702793 C T SPATA31A3 Silent p.S150S 0.23 TCGA-ER-A19L-06 9 8486101 8486101 C T PTPRD Missense_Mutation p.E906K 0.77 deleterious(0.04) benign(0.325) TCGA-ER-A19L-06 X 155233493 155233493 G A IL9R Missense_Mutation p.D136N 0.29 tolerated(0.27) possibly_damaging(0.848) TCGA-ER-A19M-06 10 102048063 102048063 A C PKD2L1 3'UTR 0.49 TCGA-ER-A19M-06 10 103916802 103916802 C T NOLC1 Silent p.S49S 0.52 TCGA-ER-A19M-06 10 105184767 105184767 G A PDCD11 Silent p.A930A 0.21 TCGA-ER-A19M-06 10 121431895 121431895 C G BAG3 Missense_Mutation p.H212Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 10 124361322 124361322 C T DMBT1 Missense_Mutation p.S1118F 0.53 deleterious(0.02) unknown(0) TCGA-ER-A19M-06 10 124390621 124390621 G A DMBT1 Missense_Mutation p.G1928E 0.38 tolerated(0.12) possibly_damaging(0.534) TCGA-ER-A19M-06 10 135165955 135165955 G A PRAP1 3'UTR 0.54 TCGA-ER-A19M-06 10 24762685 24762685 C T KIAA1217 Missense_Mutation p.P459S 0.16 tolerated(0.5) probably_damaging(0.999) TCGA-ER-A19M-06 10 25861619 25861619 C T GPR158 Missense_Mutation p.P519L 0.34 deleterious(0) probably_damaging(0.995) TCGA-ER-A19M-06 10 27459200 27459200 C T MASTL Missense_Mutation p.L438F 0.55 tolerated(0.27) benign(0.049) TCGA-ER-A19M-06 10 27702777 27702777 C T PTCHD3 Missense_Mutation p.G135S 0.41 deleterious(0.01) probably_damaging(0.947) TCGA-ER-A19M-06 10 28260045 28260045 A G ARMC4 Silent p.N378N 0.48 TCGA-ER-A19M-06 10 44112358 44112358 G A ZNF485 Silent p.Q289Q 0.08 TCGA-ER-A19M-06 10 50835824 50835824 C T CHAT Silent p.L368L 0.60 TCGA-ER-A19M-06 10 5139719 5139719 A T AKR1C3 Missense_Mutation p.I116F 0.26 deleterious(0.01) possibly_damaging(0.86) TCGA-ER-A19M-06 10 51464975 51464975 C T AGAP7 Missense_Mutation p.R494Q 0.21 deleterious(0) probably_damaging(0.951) TCGA-ER-A19M-06 10 52008332 52008332 C T ASAH2 Silent p.L13L 0.33 TCGA-ER-A19M-06 10 5258737 5258737 C T AKR1C4 Nonsense_Mutation p.R304* 0.50 TCGA-ER-A19M-06 10 70405865 70405865 C T TET1 Missense_Mutation p.P1127S 0.31 tolerated(0.15) benign(0.035) TCGA-ER-A19M-06 10 71174726 71174726 C T TACR2 Missense_Mutation p.D188N 0.42 tolerated(0.42) benign(0.014) TCGA-ER-A19M-06 10 73051457 73051457 C T UNC5B Silent p.F521F 0.38 TCGA-ER-A19M-06 10 76735663 76735663 C T KAT6B Missense_Mutation p.S523F 0.56 benign(0.365) TCGA-ER-A19M-06 10 76735664 76735664 C T KAT6B Silent p.S523S 0.55 TCGA-ER-A19M-06 10 82185723 82185723 C T FAM213A Silent p.F124F 0.46 TCGA-ER-A19M-06 10 88768593 88768593 C T RP11-96C23.10 3'Flank 0.45 TCGA-ER-A19M-06 10 89717607 89717607 C G PTEN Intron 0.56 TCGA-ER-A19M-06 10 94835604 94835604 G A CYP26A1 Missense_Mutation p.E296K 0.58 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 10 95791100 95791100 G A PLCE1 Silent p.A99A 0.49 TCGA-ER-A19M-06 10 99161108 99161108 C T RRP12 5'Flank 0.53 TCGA-ER-A19M-06 11 118376461 118376482 TCCCCAACATCATAAAAAGATC - KMT2A Frame_Shift_Del p.P3286Nfs*30 0.29 TCGA-ER-A19M-06 11 119002671 119002671 C T HINFP Missense_Mutation p.R219C 0.23 deleterious(0) probably_damaging(0.917) TCGA-ER-A19M-06 11 16838769 16838769 C T PLEKHA7 Missense_Mutation p.G482R 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 11 18655939 18655939 C T SPTY2D1 5'UTR 0.33 TCGA-ER-A19M-06 11 1908805 1908805 C T LSP1 Intron 0.19 TCGA-ER-A19M-06 11 19247118 19247118 G A E2F8 Missense_Mutation p.P691S 0.21 tolerated(0.07) benign(0.382) TCGA-ER-A19M-06 11 32421568 32421568 C T WT1 Missense_Mutation p.D342N 0.40 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-ER-A19M-06 11 33108558 33108558 G A CSTF3 Missense_Mutation p.P591S 0.19 deleterious(0.05) possibly_damaging(0.734) TCGA-ER-A19M-06 11 35333994 35333994 C G SLC1A2 Silent p.G104G 0.28 TCGA-ER-A19M-06 11 35453872 35453872 G A PAMR1 3'UTR 0.18 TCGA-ER-A19M-06 11 3720321 3720321 G A NUP98 Nonsense_Mutation p.Q1334* 0.22 TCGA-ER-A19M-06 11 433424 433424 G A ANO9 Silent p.I80I 0.34 TCGA-ER-A19M-06 11 4673831 4673831 G A OR51E1 Silent p.E25E 0.24 TCGA-ER-A19M-06 11 4703390 4703390 C T OR51E2 Missense_Mutation p.M184I 0.14 tolerated(0.11) probably_damaging(0.989) TCGA-ER-A19M-06 11 49178334 49178334 C T FOLH1 Missense_Mutation p.D520N 0.20 deleterious(0) probably_damaging(0.915) TCGA-ER-A19M-06 11 494683 494683 G A RNH1 3'UTR 0.19 TCGA-ER-A19M-06 11 5142484 5142484 G A OR52A4 RNA 0.23 TCGA-ER-A19M-06 11 5255238 5255238 C T HBD Missense_Mutation p.D100N 0.28 deleterious(0.01) benign(0.244) TCGA-ER-A19M-06 11 55433518 55433518 G A OR4C6 Silent p.V292V 0.16 TCGA-ER-A19M-06 11 55541605 55541605 G A OR5D13 Missense_Mutation p.R231Q 0.23 tolerated(0.13) benign(0.002) TCGA-ER-A19M-06 11 55761181 55761181 C T OR5F1 Silent p.R307R 0.19 TCGA-ER-A19M-06 11 55944405 55944405 C T OR5J2 Silent p.F104F 0.19 TCGA-ER-A19M-06 11 57076242 57076242 G A TNKS1BP1 Silent p.L1315L 0.26 TCGA-ER-A19M-06 11 58602238 58602238 C T GLYATL2 Silent p.G183G 0.38 TCGA-ER-A19M-06 11 5862614 5862614 C T OR52E6 Missense_Mutation p.G172R 0.24 tolerated(0.07) probably_damaging(0.965) TCGA-ER-A19M-06 11 5878393 5878393 G A OR52E8 Silent p.I180I 0.22 TCGA-ER-A19M-06 11 5968867 5968867 C T OR56A3 Silent p.S97S 0.25 TCGA-ER-A19M-06 11 5968952 5968952 C T OR56A3 Missense_Mutation p.R126C 0.25 deleterious(0.02) benign(0.052) TCGA-ER-A19M-06 11 6007343 6007343 C T OR52L1 Missense_Mutation p.G273E 0.32 deleterious(0.02) probably_damaging(1) TCGA-ER-A19M-06 11 61511136 61511136 G A DAGLA Silent p.A768A 0.54 TCGA-ER-A19M-06 11 62299443 62299443 G A AHNAK Missense_Mutation p.P816S 0.15 benign(0.396) TCGA-ER-A19M-06 11 62359052 62359052 G A TUT1 Missense_Mutation p.S7L 0.30 tolerated_low_confidence(0.28) benign(0) TCGA-ER-A19M-06 11 62564692 62564692 C T NXF1 Missense_Mutation p.E381K 0.29 deleterious(0) benign(0.118) TCGA-ER-A19M-06 11 64112077 64112077 G A CCDC88B Silent p.G688G 0.43 TCGA-ER-A19M-06 11 64876824 64876824 C T VPS51 Nonsense_Mutation p.Q506* 0.37 TCGA-ER-A19M-06 11 6520102 6520102 C T DNHD1 Silent p.P219P 0.26 TCGA-ER-A19M-06 11 70007744 70007744 G A ANO1 Silent p.E599E 0.12 TCGA-ER-A19M-06 11 7111420 7111420 G A RBMXL2 Missense_Mutation p.G357S 0.45 tolerated(0.31) unknown(0) TCGA-ER-A19M-06 11 73785298 73785298 C T C2CD3 Missense_Mutation p.G1651R 0.15 deleterious(0) probably_damaging(0.982) TCGA-ER-A19M-06 11 74415649 74415649 C T CHRDL2 Silent p.P211P 0.36 TCGA-ER-A19M-06 11 7817653 7817653 G A OR5P2 Silent p.P279P 0.17 TCGA-ER-A19M-06 11 89531747 89531747 C T TRIM49 Missense_Mutation p.E304K 0.23 tolerated(0.18) benign(0.317) TCGA-ER-A19M-06 11 9009764 9009764 G A NRIP3 Silent p.P80P 0.20 TCGA-ER-A19M-06 11 9167357 9167357 G A DENND5A Missense_Mutation p.P955S 0.22 deleterious(0.01) benign(0.271) TCGA-ER-A19M-06 12 101552059 101552059 C T SLC5A8 Missense_Mutation p.D560N 0.19 deleterious(0.01) benign(0.275) TCGA-ER-A19M-06 12 10321708 10321708 C T OLR1 Missense_Mutation p.G48E 0.30 deleterious(0.02) possibly_damaging(0.878) TCGA-ER-A19M-06 12 104118760 104118760 G A STAB2 Missense_Mutation p.G1564D 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 12 106633303 106633303 G A CKAP4 Silent p.S436S 0.21 TCGA-ER-A19M-06 12 106717347 106717347 G A TCP11L2 Missense_Mutation p.S232N 0.16 tolerated(0.23) benign(0.03) TCGA-ER-A19M-06 12 117665378 117665378 G A NOS1 Silent p.F1192F 0.23 TCGA-ER-A19M-06 12 121958817 121958817 G T KDM2B Silent p.R340R 0.23 TCGA-ER-A19M-06 12 121958818 121958818 C T KDM2B Silent p.L339L 0.23 TCGA-ER-A19M-06 12 14018855 14018855 C T GRIN2B Silent p.G96G 0.34 TCGA-ER-A19M-06 12 14018856 14018856 C T GRIN2B Missense_Mutation p.G96E 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 12 19615523 19615523 A C AEBP2 Missense_Mutation p.S251R 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.731) TCGA-ER-A19M-06 12 271212 271212 C T IQSEC3 Missense_Mutation p.S855F 0.32 deleterious(0.05) probably_damaging(0.962) TCGA-ER-A19M-06 12 3757713 3757713 G A EFCAB4B Silent p.F371F 0.24 TCGA-ER-A19M-06 12 42778790 42778790 C T PPHLN1 Missense_Mutation p.P187L 0.37 deleterious(0.02) benign(0.103) TCGA-ER-A19M-06 12 42862430 42862430 C T PRICKLE1 Missense_Mutation p.E196K 0.43 deleterious(0) probably_damaging(0.995) TCGA-ER-A19M-06 12 49425896 49425896 G C KMT2D Missense_Mutation p.R4198G 0.43 unknown(0) TCGA-ER-A19M-06 12 50471886 50471886 C T ASIC1 Silent p.T271T 0.21 TCGA-ER-A19M-06 12 51717848 51717848 G A BIN2 Silent p.F13F 0.13 TCGA-ER-A19M-06 12 52200469 52200469 G A SCN8A Silent p.K1733K 0.11 TCGA-ER-A19M-06 12 52885331 52885331 C T KRT6A Missense_Mutation p.D244N 0.09 deleterious(0.04) probably_damaging(0.969) TCGA-ER-A19M-06 12 53700517 53700517 G A C12orf10 Silent p.K273K 0.48 TCGA-ER-A19M-06 12 55846163 55846163 C T OR6C2 Missense_Mutation p.P56S 0.17 deleterious_low_confidence(0.01) benign(0.437) TCGA-ER-A19M-06 12 56094070 56094070 G A ITGA7 Missense_Mutation p.P260S 0.50 deleterious(0.02) possibly_damaging(0.628) TCGA-ER-A19M-06 12 57111267 57111267 G A NACA Intron 0.15 TCGA-ER-A19M-06 12 6030365 6030365 G A ANO2 Silent p.I121I 0.26 TCGA-ER-A19M-06 12 66517596 66517596 G A LLPH 3'UTR 0.29 TCGA-ER-A19M-06 12 70974845 70974845 G A PTPRB Missense_Mutation p.S850F 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 12 71139691 71139691 G A PTPRR Missense_Mutation p.P305L 0.20 deleterious(0) benign(0.089) TCGA-ER-A19M-06 12 7476100 7476100 G A ACSM4 Missense_Mutation p.E418K 0.33 deleterious(0.04) benign(0.155) TCGA-ER-A19M-06 12 7528552 7528552 C T CD163L1 Silent p.V810V 0.37 TCGA-ER-A19M-06 12 7551065 7551065 C T CD163L1 Silent p.R508R 0.26 TCGA-ER-A19M-06 12 78400986 78400986 T C NAV3 Silent p.T556T 0.25 TCGA-ER-A19M-06 12 81741370 81741370 G A PPFIA2 Missense_Mutation p.P725L 0.19 deleterious(0.01) possibly_damaging(0.767) TCGA-ER-A19M-06 12 9266021 9266021 C T A2M Missense_Mutation p.G69R 0.23 tolerated(0.43) benign(0.008) TCGA-ER-A19M-06 13 102235598 102235598 G A ITGBL1 Missense_Mutation p.D254N 0.27 tolerated(0.06) probably_damaging(0.932) TCGA-ER-A19M-06 13 103698491 103698491 C T SLC10A2 Missense_Mutation p.E347K 0.22 tolerated(0.06) benign(0.006) TCGA-ER-A19M-06 13 20012252 20012252 C T TPTE2 Missense_Mutation p.E339K 0.31 tolerated(0.17) benign(0.059) TCGA-ER-A19M-06 13 26138145 26138145 G T ATP8A2 Silent p.L483L 0.28 TCGA-ER-A19M-06 13 29608167 29608167 G A MTUS2 Missense_Mutation p.R794K 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19M-06 13 38266255 38266255 G A TRPC4 Missense_Mutation p.S372F 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 13 41533055 41533055 G C ELF1 Missense_Mutation p.P57R 0.28 tolerated(0.05) probably_damaging(0.965) TCGA-ER-A19M-06 13 50296168 50296168 G A KPNA3 Missense_Mutation p.L217F 0.42 deleterious(0) probably_damaging(0.998) TCGA-ER-A19M-06 13 84453441 84453441 C T SLITRK1 3'UTR 0.50 TCGA-ER-A19M-06 13 84454061 84454061 C T SLITRK1 Missense_Mutation p.G528R 0.31 deleterious(0.04) benign(0.053) TCGA-ER-A19M-06 13 96508421 96508421 A G UGGT2 Silent p.D1333D 0.32 TCGA-ER-A19M-06 14 106054159 106054159 G A IGHA2 Silent p.A120A 0.47 TCGA-ER-A19M-06 14 107048718 107048718 A G IGHV3-53 Missense_Mutation p.M101T 0.40 deleterious_low_confidence(0) benign(0.331) TCGA-ER-A19M-06 14 107095399 107095399 G A IGHV4-61 Silent p.G27G 0.54 TCGA-ER-A19M-06 14 20483167 20483167 G A OR4K14 Silent p.F62F 0.25 TCGA-ER-A19M-06 14 20612085 20612085 G A OR4N5 Missense_Mutation p.G64D 0.19 deleterious(0.04) possibly_damaging(0.847) TCGA-ER-A19M-06 14 21469592 21469592 G A SLC39A2 Missense_Mutation p.E262K 0.26 deleterious(0) probably_damaging(0.948) TCGA-ER-A19M-06 14 22180873 22180873 C T TRAV2 Missense_Mutation p.H49Y 0.25 deleterious(0) probably_damaging(0.969) TCGA-ER-A19M-06 14 24728307 24728307 C A TGM1 Missense_Mutation p.W378L 0.28 deleterious(0.05) probably_damaging(0.967) TCGA-ER-A19M-06 14 24729862 24729862 G T TGM1 Missense_Mutation p.P184Q 0.16 tolerated(0.07) possibly_damaging(0.705) TCGA-ER-A19M-06 14 24877086 24877086 G A NYNRIN Silent p.K70K 0.41 TCGA-ER-A19M-06 14 47120879 47120879 G A RPL10L Missense_Mutation p.R21C 0.21 tolerated(0.11) benign(0.013) TCGA-ER-A19M-06 14 54417129 54417129 G A BMP4 Missense_Mutation p.A283V 0.18 tolerated(0.16) benign(0.029) TCGA-ER-A19M-06 14 70515756 70515756 C T SLC8A3 Missense_Mutation p.G712E 0.35 tolerated(0.51) benign(0.03) TCGA-ER-A19M-06 14 70633770 70633770 G A SLC8A3 Missense_Mutation p.P457L 0.43 deleterious(0) possibly_damaging(0.705) TCGA-ER-A19M-06 14 70634927 70634927 C T SLC8A3 Silent p.G71G 0.40 TCGA-ER-A19M-06 14 75016650 75016650 C T LTBP2 Missense_Mutation p.E569K 0.26 tolerated(0.06) possibly_damaging(0.825) TCGA-ER-A19M-06 14 77255635 77255635 G A ANGEL1 Missense_Mutation p.P650L 0.17 tolerated(0.34) possibly_damaging(0.549) TCGA-ER-A19M-06 14 77723022 77723022 C T TMEM63C Nonsense_Mutation p.Q792* 0.24 TCGA-ER-A19M-06 14 92102822 92102822 C T CATSPERB Silent p.T563T 0.19 TCGA-ER-A19M-06 14 94756279 94756279 G A SERPINA10 Missense_Mutation p.P218S 0.26 tolerated(0.13) benign(0.161) TCGA-ER-A19M-06 14 96131368 96131368 C T TCL6 RNA 0.29 TCGA-ER-A19M-06 15 25325293 25325293 C T SNORD116-14 RNA 0.20 TCGA-ER-A19M-06 15 26825473 26825473 G A GABRB3 Silent p.F225F 0.39 TCGA-ER-A19M-06 15 39874527 39874527 C T THBS1 Silent p.I67I 0.39 TCGA-ER-A19M-06 15 40590508 40590508 C T PLCB2 Silent p.E357E 0.16 TCGA-ER-A19M-06 15 45059500 45059500 G A TRIM69 Missense_Mutation p.V345I 0.17 tolerated(0.1) probably_damaging(0.954) TCGA-ER-A19M-06 15 48797260 48797260 G A FBN1 Missense_Mutation p.P641L 0.22 benign(0.009) TCGA-ER-A19M-06 15 52672096 52672096 C T MYO5A Silent p.E674E 0.24 TCGA-ER-A19M-06 15 54685312 54685312 C A UNC13C Missense_Mutation p.Q1594K 0.28 tolerated_low_confidence(1) benign(0.004) TCGA-ER-A19M-06 15 64464026 64464026 C T CSNK1G1 3'UTR 0.16 TCGA-ER-A19M-06 15 74003645 74003645 C T CD276 Intron 0.55 TCGA-ER-A19M-06 15 74003646 74003646 C T CD276 Intron 0.50 TCGA-ER-A19M-06 15 75108595 75108595 G A LMAN1L Nonsense_Mutation p.W91* 0.43 TCGA-ER-A19M-06 15 77064215 77064215 A T SCAPER Silent p.A372A 0.58 TCGA-ER-A19M-06 15 80450417 80450417 G A FAH Missense_Mutation p.G33S 0.43 deleterious(0) possibly_damaging(0.884) TCGA-ER-A19M-06 15 81633859 81633859 C T TMC3 Nonsense_Mutation p.W572* 0.20 TCGA-ER-A19M-06 15 85164689 85164689 C T ZSCAN2 Silent p.S421S 0.18 TCGA-ER-A19M-06 15 86124489 86124489 C T AKAP13 Missense_Mutation p.P1064S 0.16 tolerated_low_confidence(0.13) benign(0.023) TCGA-ER-A19M-06 15 88522627 88522627 G A NTRK3 Intron 0.52 TCGA-ER-A19M-06 15 89074577 89074577 G A DET1 Silent p.L131L 0.53 TCGA-ER-A19M-06 15 90226942 90226942 C T PEX11A Missense_Mutation p.R137K 0.55 deleterious(0.02) probably_damaging(0.955) TCGA-ER-A19M-06 16 14972645 14972645 C T NOMO1 Missense_Mutation p.S904F 0.11 deleterious(0) probably_damaging(0.987) TCGA-ER-A19M-06 16 1544462 1544462 G T TELO2 Silent p.S60S 0.15 TCGA-ER-A19M-06 16 18863469 18863469 G A SMG1 Missense_Mutation p.P1658S 0.32 deleterious(0) possibly_damaging(0.888) TCGA-ER-A19M-06 16 20476952 20476952 C T ACSM2A Silent p.L97L 0.17 TCGA-ER-A19M-06 16 20566767 20566767 C T ACSM2B Missense_Mutation p.M140I 0.18 deleterious(0) possibly_damaging(0.743) TCGA-ER-A19M-06 16 20570656 20570656 G A ACSM2B Silent p.L97L 0.37 TCGA-ER-A19M-06 16 20975062 20975062 T G DNAH3 Missense_Mutation p.M3382L 0.16 tolerated(1) benign(0) TCGA-ER-A19M-06 16 2283156 2283156 C T E4F1 Missense_Mutation p.S343F 0.28 tolerated(0.1) benign(0.005) TCGA-ER-A19M-06 16 2305681 2305681 G A RNPS1 Silent p.P241P 0.19 TCGA-ER-A19M-06 16 2376171 2376171 G C ABCA3 Missense_Mutation p.N53K 0.33 tolerated(0.2) benign(0.023) TCGA-ER-A19M-06 16 25251997 25251997 G C ZKSCAN2 Missense_Mutation p.Q682E 0.19 tolerated(1) benign(0.036) TCGA-ER-A19M-06 16 29675161 29675161 G A SPN Missense_Mutation p.E38K 0.37 tolerated(0.75) benign(0.001) TCGA-ER-A19M-06 16 29853387 29853387 G A MVP Missense_Mutation p.E530K 0.33 deleterious(0) probably_damaging(0.993) TCGA-ER-A19M-06 16 3021713 3021713 G A PAQR4 Missense_Mutation p.G196S 0.29 tolerated(0.08) probably_damaging(0.968) TCGA-ER-A19M-06 16 30387995 30387995 G A MYLPF Missense_Mutation p.G111E 0.28 deleterious(0.01) possibly_damaging(0.77) TCGA-ER-A19M-06 16 31425813 31425813 C T ITGAD Missense_Mutation p.P680S 0.16 tolerated(0.21) possibly_damaging(0.528) TCGA-ER-A19M-06 16 32266254 32266254 G A TP53TG3D 3'UTR 0.13 TCGA-ER-A19M-06 16 3614498 3614498 G A NLRC3 Missense_Mutation p.A194V 0.17 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 16 4432028 4432028 G A VASN Missense_Mutation p.E384K 0.54 tolerated(0.3) benign(0.118) TCGA-ER-A19M-06 16 48175245 48175245 C T ABCC12 Missense_Mutation p.E99K 0.18 tolerated(0.05) benign(0.076) TCGA-ER-A19M-06 16 53476711 53476711 G A RBL2 Silent p.Q171Q 0.29 TCGA-ER-A19M-06 16 55844493 55844493 G A CES1 Silent p.F418F 0.17 TCGA-ER-A19M-06 16 57007293 57007293 C T CETP Silent p.F267F 0.47 TCGA-ER-A19M-06 16 58609005 58609005 G A CNOT1 Missense_Mutation p.P578L 0.49 deleterious(0.01) possibly_damaging(0.764) TCGA-ER-A19M-06 16 58616794 58616794 G A CNOT1 Missense_Mutation p.P316L 0.24 deleterious(0.02) benign(0.004) TCGA-ER-A19M-06 16 58621701 58621701 G A CNOT1 Missense_Mutation p.P98S 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-ER-A19M-06 16 68894292 68894292 G A TANGO6 Silent p.K200K 0.39 TCGA-ER-A19M-06 16 69369149 69369149 C T COG8 Missense_Mutation p.G230S 0.40 deleterious(0.02) possibly_damaging(0.449) TCGA-ER-A19M-06 16 69778811 69778811 G A NOB1 Missense_Mutation p.R312C 0.33 deleterious(0) probably_damaging(0.946) TCGA-ER-A19M-06 16 70977820 70977820 G A HYDIN Silent p.I2188I 0.19 TCGA-ER-A19M-06 16 74957846 74957846 G A WDR59 Missense_Mutation p.P236L 0.44 deleterious(0) probably_damaging(0.959) TCGA-ER-A19M-06 16 77396068 77396068 C T ADAMTS18 Missense_Mutation p.D384N 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 16 77465388 77465388 C T ADAMTS18 Missense_Mutation p.R100Q 0.15 tolerated(0.08) benign(0.056) TCGA-ER-A19M-06 16 830710 830710 G A MSLNL Silent p.P97P 0.40 TCGA-ER-A19M-06 16 89805511 89805511 C T FANCA Intron 0.18 TCGA-ER-A19M-06 16 9984935 9984935 C T GRIN2A Missense_Mutation p.D344N 0.42 deleterious(0.04) benign(0.002) TCGA-ER-A19M-06 17 10258027 10258027 G A MYH13 Silent p.I325I 0.35 TCGA-ER-A19M-06 17 10358382 10358382 C T MYH4 Missense_Mutation p.A771T 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19M-06 17 10544415 10544415 C T MYH3 Missense_Mutation p.D718N 0.21 deleterious(0) benign(0.264) TCGA-ER-A19M-06 17 11554596 11554596 C T DNAH9 Missense_Mutation p.L770F 0.30 benign(0.009) TCGA-ER-A19M-06 17 12666750 12666750 C T MYOCD Missense_Mutation p.S917L 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-ER-A19M-06 17 13980184 13980184 C T COX10 Missense_Mutation p.P104S 0.14 tolerated(0.14) benign(0.005) TCGA-ER-A19M-06 17 21319489 21319489 C T KCNJ12 Missense_Mutation p.P279S 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 17 29326074 29326074 C T RNF135 Silent p.A388A 0.35 TCGA-ER-A19M-06 17 30526561 30526561 C T RHOT1 Silent p.S364S 0.24 TCGA-ER-A19M-06 17 33680062 33680062 G A SLFN11 Silent p.F673F 0.21 TCGA-ER-A19M-06 17 37566351 37566351 A C MED1 Missense_Mutation p.F708C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19M-06 17 37825953 37825953 A G PNMT Missense_Mutation p.S92G 0.29 deleterious(0.02) benign(0.025) TCGA-ER-A19M-06 17 39023413 39023413 G A KRT12 Missense_Mutation p.S9L 0.17 tolerated_low_confidence(0.08) unknown(0) TCGA-ER-A19M-06 17 40729482 40729482 C T PSMC3IP Silent p.K44K 0.14 TCGA-ER-A19M-06 17 41004296 41004296 C T AOC3 Silent p.P312P 0.15 TCGA-ER-A19M-06 17 41141501 41141501 T G RUNDC1 Silent p.V267V 0.34 TCGA-ER-A19M-06 17 41141503 41141503 A C RUNDC1 Missense_Mutation p.E268A 0.33 tolerated(0.25) possibly_damaging(0.887) TCGA-ER-A19M-06 17 41598900 41598900 A G DHX8 Missense_Mutation p.D1077G 0.25 deleterious(0) probably_damaging(0.996) TCGA-ER-A19M-06 17 42427595 42427595 G A GRN Splice_Site p.X117_splice 0.24 TCGA-ER-A19M-06 17 44049230 44049230 C T MAPT Missense_Mutation p.P47S 0.29 tolerated(0.1) benign(0.066) TCGA-ER-A19M-06 17 44953982 44953982 C T WNT9B Silent p.S324S 0.11 TCGA-ER-A19M-06 17 45894686 45894686 C T OSBPL7 Missense_Mutation p.R213K 0.15 tolerated(0.5) benign(0.002) TCGA-ER-A19M-06 17 46692052 46692052 G A HOXB8 Silent p.F5F 0.17 TCGA-ER-A19M-06 17 5462554 5462554 C T NLRP1 Missense_Mutation p.E488K 0.22 tolerated(0.26) benign(0.223) TCGA-ER-A19M-06 17 56247028 56247028 G A OR4D2 Silent p.G4G 0.16 TCGA-ER-A19M-06 17 58121158 58121158 G A HEATR6 Silent p.S1104S 0.24 TCGA-ER-A19M-06 17 61571326 61571326 C T ACE Silent p.I1060I 0.21 TCGA-ER-A19M-06 17 62891239 62891239 G A LRRC37A3 Silent p.L713L 0.15 TCGA-ER-A19M-06 17 63049743 63049743 G A GNA13 Silent p.A129A 0.24 TCGA-ER-A19M-06 17 6684108 6684108 G A FBXO39 Silent p.P307P 0.27 TCGA-ER-A19M-06 17 7224974 7224974 G A NEURL4 Missense_Mutation p.R1002W 0.20 deleterious(0.01) possibly_damaging(0.719) TCGA-ER-A19M-06 17 72613434 72613434 C T CD300E Missense_Mutation p.E71K 0.20 tolerated(1) benign(0.205) TCGA-ER-A19M-06 17 72700933 72700933 G A CD300LF Silent p.I22I 0.29 TCGA-ER-A19M-06 17 74004005 74004005 C T EVPL Missense_Mutation p.E1761K 0.21 tolerated(0.22) possibly_damaging(0.823) TCGA-ER-A19M-06 17 7401001 7401001 C A POLR2A Silent p.S338S 0.23 TCGA-ER-A19M-06 17 7534037 7534037 G A SHBG Silent p.E81E 0.16 TCGA-ER-A19M-06 17 7535019 7535019 C T SHBG Missense_Mutation p.P223L 0.22 deleterious(0) probably_damaging(0.995) TCGA-ER-A19M-06 17 7535020 7535020 C T SHBG Silent p.P223P 0.22 TCGA-ER-A19M-06 17 75495297 75495297 C T SEPT9 3'UTR 0.42 TCGA-ER-A19M-06 17 76435239 76435239 C T DNAH17 Missense_Mutation p.G3899E 0.26 probably_damaging(0.993) TCGA-ER-A19M-06 17 7915821 7915821 G A GUCY2D Silent p.R670R 0.16 TCGA-ER-A19M-06 17 79639161 79639161 C T CCDC137 Silent p.P212P 0.18 TCGA-ER-A19M-06 17 79914800 79914800 C T NOTUM Silent p.T282T 0.17 TCGA-ER-A19M-06 17 8013726 8013726 C T ALOXE3 Missense_Mutation p.A492T 0.28 tolerated(0.54) benign(0.043) TCGA-ER-A19M-06 17 80789646 80789646 C T ZNF750 Missense_Mutation p.G229R 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-ER-A19M-06 17 8248693 8248693 C T ODF4 Missense_Mutation p.P163S 0.21 deleterious(0.02) probably_damaging(0.984) TCGA-ER-A19M-06 17 8783930 8783930 C T PIK3R5 3'UTR 0.27 TCGA-ER-A19M-06 18 28721967 28721967 C A DSC1 Missense_Mutation p.V419F 0.11 deleterious(0) probably_damaging(0.911) TCGA-ER-A19M-06 18 28934459 28934459 C T DSG1 Missense_Mutation p.S767L 0.23 tolerated(0.08) benign(0.006) TCGA-ER-A19M-06 18 28968854 28968854 G A DSG4 Silent p.L130L 0.27 TCGA-ER-A19M-06 18 28971154 28971154 C T DSG4 Silent p.F266F 0.20 TCGA-ER-A19M-06 18 31322974 31322974 C T ASXL3 Silent p.L1054L 0.38 TCGA-ER-A19M-06 18 32457689 32457689 G A DTNA Missense_Mutation p.R550K 0.24 tolerated(0.14) benign(0.16) TCGA-ER-A19M-06 18 43221223 43221223 C T SLC14A2 Silent p.S347S 0.25 TCGA-ER-A19M-06 18 44409801 44409801 G A PIAS2 Missense_Mutation p.S411F 0.28 deleterious(0) possibly_damaging(0.831) TCGA-ER-A19M-06 18 52265079 52265079 G A DYNAP Nonsense_Mutation p.W112* 0.28 TCGA-ER-A19M-06 18 59221637 59221637 C T CDH20 Silent p.I705I 0.27 TCGA-ER-A19M-06 18 5969486 5969486 C T L3MBTL4 Missense_Mutation p.R516Q 0.21 tolerated(0.05) possibly_damaging(0.494) TCGA-ER-A19M-06 18 61309103 61309103 A G SERPINB4 Missense_Mutation p.V81A 0.32 deleterious(0.04) possibly_damaging(0.898) TCGA-ER-A19M-06 18 61390629 61390629 C T SERPINB11 Missense_Mutation p.P392L 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 18 64211262 64211262 G A CDH19 Missense_Mutation p.S387L 0.14 deleterious(0) benign(0.036) TCGA-ER-A19M-06 18 70205504 70205504 C T CBLN2 Silent p.R194R 0.22 TCGA-ER-A19M-06 18 7231695 7231695 G A LRRC30 Missense_Mutation p.E187K 0.18 tolerated(0.64) benign(0.05) TCGA-ER-A19M-06 18 74980632 74980632 T C GALR1 Missense_Mutation p.F275S 0.23 deleterious(0) possibly_damaging(0.771) TCGA-ER-A19M-06 18 9124966 9124966 A T NDUFV2 Silent p.I188I 0.25 TCGA-ER-A19M-06 19 10578249 10578249 C T PDE4A Silent p.S871S 0.52 TCGA-ER-A19M-06 19 11101984 11101984 C T SMARCA4 Silent p.R468R 0.23 TCGA-ER-A19M-06 19 11101985 11101985 C T SMARCA4 Missense_Mutation p.R469W 0.23 probably_damaging(0.997) TCGA-ER-A19M-06 19 1399562 1399562 C T GAMT Missense_Mutation p.E118K 0.19 deleterious(0) possibly_damaging(0.544) TCGA-ER-A19M-06 19 15839084 15839084 C T OR10H2 Silent p.I77I 0.36 TCGA-ER-A19M-06 19 17088325 17088325 C T CPAMD8 Silent p.E584E 0.30 TCGA-ER-A19M-06 19 2853208 2853208 C T ZNF555 Missense_Mutation p.S382F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19M-06 19 36883766 36883766 G A ZFP82 Silent p.S492S 0.38 TCGA-ER-A19M-06 19 37935844 37935844 G A ZNF569 5'UTR 0.40 TCGA-ER-A19M-06 19 38949949 38949949 C T RYR1 Silent p.F777F 0.42 TCGA-ER-A19M-06 19 43234008 43234008 C T PSG3 Missense_Mutation p.E304K 0.30 deleterious(0.04) possibly_damaging(0.755) TCGA-ER-A19M-06 19 43773551 43773551 C T PSG9 Silent p.Q11Q 0.26 TCGA-ER-A19M-06 19 45016928 45016928 G A CEACAM20 Intron 0.39 TCGA-ER-A19M-06 19 46307996 46307996 C T RSPH6A Silent p.E389E 0.52 TCGA-ER-A19M-06 19 50548282 50548282 C T ZNF473 Silent p.S194S 0.40 TCGA-ER-A19M-06 19 51020735 51020735 G A LRRC4B 3'UTR 0.62 TCGA-ER-A19M-06 19 52130742 52130742 G A SIGLEC5 Nonsense_Mutation p.Q419* 0.50 TCGA-ER-A19M-06 19 52272881 52272881 G A FPR2 Missense_Mutation p.A324T 0.36 deleterious(0) probably_damaging(0.997) TCGA-ER-A19M-06 19 56329591 56329591 G A NLRP11 5'UTR 0.44 TCGA-ER-A19M-06 19 9063190 9063190 G A MUC16 Missense_Mutation p.P8086S 0.19 unknown(0) TCGA-ER-A19M-06 19 9077652 9077652 C T MUC16 Missense_Mutation p.G3265E 0.54 unknown(0) TCGA-ER-A19M-06 19 9086450 9086450 C T MUC16 Missense_Mutation p.E1789K 0.47 unknown(0) TCGA-ER-A19M-06 1 109745691 109745691 C T KIAA1324 3'UTR 0.22 TCGA-ER-A19M-06 1 109944543 109944543 G A PSMA5 3'UTR 0.35 TCGA-ER-A19M-06 1 11086950 11086950 C T MASP2 Missense_Mutation p.D685N 0.20 tolerated_low_confidence(1) benign(0) TCGA-ER-A19M-06 1 11106640 11106640 C T MASP2 Missense_Mutation p.G129R 0.19 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 1 111147543 111147543 G A KCNA2 5'UTR 0.40 TCGA-ER-A19M-06 1 114500849 114500849 C T HIPK1 Silent p.T639T 0.19 TCGA-ER-A19M-06 1 115223067 115223067 G A AMPD1 Missense_Mutation p.P227S 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A19M-06 1 116607112 116607112 C T SLC22A15 Missense_Mutation p.P450S 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 1 1268330 1268330 C T TAS1R3 Silent p.F435F 0.27 TCGA-ER-A19M-06 1 12907539 12907539 C T HNRNPCL1 Missense_Mutation p.E202K 0.31 deleterious(0.02) benign(0.241) TCGA-ER-A19M-06 1 12907540 12907540 C T HNRNPCL1 Silent p.L201L 0.33 TCGA-ER-A19M-06 1 13942453 13942453 C T PDPN 3'UTR 0.24 TCGA-ER-A19M-06 1 145074950 145074950 G A PDE4DIP 3'UTR 0.10 TCGA-ER-A19M-06 1 147230292 147230292 C T GJA5 Missense_Mutation p.R352K 0.18 tolerated(0.08) unknown(0) TCGA-ER-A19M-06 1 151062994 151062994 C T GABPB2 Missense_Mutation p.P74L 0.28 deleterious(0) possibly_damaging(0.883) TCGA-ER-A19M-06 1 152282908 152282908 C T FLG Missense_Mutation p.G1485D 0.25 probably_damaging(0.931) TCGA-ER-A19M-06 1 152329201 152329201 C T FLG2 Missense_Mutation p.G354E 0.24 unknown(0) TCGA-ER-A19M-06 1 152383101 152383101 G A CRNN Nonsense_Mutation p.Q153* 0.21 TCGA-ER-A19M-06 1 152586426 152586426 C T LCE3B Missense_Mutation p.P47L 0.55 tolerated_low_confidence(0.15) unknown(0) TCGA-ER-A19M-06 1 152732039 152732039 C T KPRP Intron 0.28 TCGA-ER-A19M-06 1 152882555 152882555 G A IVL Silent p.Q94Q 0.26 TCGA-ER-A19M-06 1 153028957 153028957 C T SPRR2A 3'UTR 0.22 TCGA-ER-A19M-06 1 154027279 154027279 C T NUP210L Silent p.E1090E 0.10 TCGA-ER-A19M-06 1 154309857 154309857 C T ATP8B2 Silent p.L324L 0.18 TCGA-ER-A19M-06 1 155340395 155340395 G A ASH1L Silent p.L2196L 0.20 TCGA-ER-A19M-06 1 156849818 156849818 C T NTRK1 Missense_Mutation p.R692C 0.24 deleterious(0) probably_damaging(0.996) TCGA-ER-A19M-06 1 158670372 158670372 G A OR6K2 Missense_Mutation p.S24F 0.29 deleterious(0.03) possibly_damaging(0.62) TCGA-ER-A19M-06 1 159277591 159277591 C T FCER1A Silent p.L215L 0.12 TCGA-ER-A19M-06 1 159888421 159888421 G A TAGLN2 3'UTR 0.38 TCGA-ER-A19M-06 1 159901688 159901688 C T IGSF9 Missense_Mutation p.E426K 0.21 tolerated(0.51) benign(0.049) TCGA-ER-A19M-06 1 166973532 166973532 C T MAEL Silent p.I213I 0.33 TCGA-ER-A19M-06 1 166990350 166990350 C G MAEL Missense_Mutation p.S357C 0.26 tolerated(0.1) possibly_damaging(0.471) TCGA-ER-A19M-06 1 167023508 167023508 G A GPA33 3'UTR 0.26 TCGA-ER-A19M-06 1 169094121 169094121 G A ATP1B1 Splice_Site p.X76_splice 0.16 TCGA-ER-A19M-06 1 171168578 171168578 G A FMO2 Missense_Mutation p.G193E 0.16 deleterious(0) probably_damaging(0.996) TCGA-ER-A19M-06 1 172001622 172001622 C T DNM3 Silent p.L224L 0.19 TCGA-ER-A19M-06 1 176709324 176709324 G A PAPPA2 Silent p.Q1381Q 0.33 TCGA-ER-A19M-06 1 178515034 178515034 C T C1ORF220 3'UTR 0.38 TCGA-ER-A19M-06 1 178822911 178822911 C T ANGPTL1 Missense_Mutation p.D279N 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 1 178863065 178863065 C T RALGPS2 Missense_Mutation p.S446L 0.26 tolerated(0.1) benign(0.001) TCGA-ER-A19M-06 1 180651525 180651525 G T XPR1 Missense_Mutation p.Q33H 0.18 tolerated(0.45) possibly_damaging(0.726) TCGA-ER-A19M-06 1 18152345 18152345 C T ACTL8 Silent p.T144T 0.26 TCGA-ER-A19M-06 1 19518734 19518734 G A UBR4 Missense_Mutation p.L448F 0.26 benign(0.001) TCGA-ER-A19M-06 1 196762596 196762596 C T CFHR3 Nonsense_Mutation p.Q316* 0.30 TCGA-ER-A19M-06 1 196918654 196918654 C T CFHR2 Missense_Mutation p.S43F 0.19 tolerated(1) benign(0.016) TCGA-ER-A19M-06 1 196952150 196952150 C T CFHR5 Missense_Mutation p.S65F 0.26 deleterious(0.04) possibly_damaging(0.726) TCGA-ER-A19M-06 1 197026243 197026243 C T F13B Silent p.G357G 0.24 TCGA-ER-A19M-06 1 200818824 200818824 G A CAMSAP2 Missense_Mutation p.R976K 0.30 tolerated(0.14) benign(0.233) TCGA-ER-A19M-06 1 203680232 203680232 C T ATP2B4 Missense_Mutation p.P676L 0.20 deleterious(0) probably_damaging(0.972) TCGA-ER-A19M-06 1 209878199 209878199 G A HSD11B1 Intron 0.38 TCGA-ER-A19M-06 1 21151601 21151601 A G EIF4G3 Silent p.L1404L 0.12 TCGA-ER-A19M-06 1 211538796 211538796 C T TRAF5 Nonsense_Mutation p.Q259* 0.30 TCGA-ER-A19M-06 1 21212828 21212828 G A EIF4G3 Nonsense_Mutation p.Q714* 0.23 TCGA-ER-A19M-06 1 212799401 212799401 C T FAM71A Silent p.P394P 0.15 TCGA-ER-A19M-06 1 21889741 21889741 G A ALPL Missense_Mutation p.E146K 0.29 tolerated(0.08) possibly_damaging(0.9) TCGA-ER-A19M-06 1 222717364 222717364 C T HHIPL2 Silent p.R163R 0.27 TCGA-ER-A19M-06 1 228470799 228470799 T C OBSCN Missense_Mutation p.S3280P 0.18 probably_damaging(0.999) TCGA-ER-A19M-06 1 228482034 228482034 C T OBSCN Silent p.I4200I 0.27 TCGA-ER-A19M-06 1 228548354 228548354 C T OBSCN Intron 0.14 TCGA-ER-A19M-06 1 23234655 23234655 T G EPHB2 Missense_Mutation p.S783R 0.33 deleterious(0.01) benign(0.025) TCGA-ER-A19M-06 1 237965207 237965207 C T RYR2 Silent p.F4714F 0.48 TCGA-ER-A19M-06 1 24398487 24398487 C T MYOM3 Silent p.K995K 0.20 TCGA-ER-A19M-06 1 248039677 248039677 C T TRIM58 Silent p.F449F 0.23 TCGA-ER-A19M-06 1 24859646 24859646 C T RCAN3 Missense_Mutation p.S148F 0.27 deleterious(0) probably_damaging(0.987) TCGA-ER-A19M-06 1 27875805 27875805 G A AHDC1 Missense_Mutation p.A941V 0.28 tolerated(0.24) possibly_damaging(0.682) TCGA-ER-A19M-06 1 28861871 28861871 C G RCC1 Missense_Mutation p.R245G 0.22 tolerated(0.12) benign(0.203) TCGA-ER-A19M-06 1 31349422 31349422 G A SDC3 Missense_Mutation p.P283S 0.21 tolerated(0.78) unknown(0) TCGA-ER-A19M-06 1 31349423 31349423 G A SDC3 Silent p.A282A 0.21 TCGA-ER-A19M-06 1 32687959 32687959 G A EIF3I 5'Flank 0.32 TCGA-ER-A19M-06 1 32687960 32687960 G A EIF3I 5'Flank 0.31 TCGA-ER-A19M-06 1 34209138 34209138 C T CSMD2 Missense_Mutation p.G599D 0.20 deleterious(0.05) probably_damaging(0.987) TCGA-ER-A19M-06 1 34383834 34383834 C T CSMD2 Missense_Mutation p.E221K 0.15 tolerated(0.05) possibly_damaging(0.88) TCGA-ER-A19M-06 1 47264727 47264727 G A CYP4B1 5'UTR 0.31 TCGA-ER-A19M-06 1 47264920 47264920 G A CYP4B1 Missense_Mutation p.G56E 0.44 deleterious(0) probably_damaging(0.984) TCGA-ER-A19M-06 1 47395761 47395761 G A CYP4A11 3'UTR 0.25 TCGA-ER-A19M-06 1 53555623 53555623 G A SLC1A7 Intron 0.15 TCGA-ER-A19M-06 1 55166821 55166821 C T MROH7 Silent p.A1037A 0.26 TCGA-ER-A19M-06 1 55172175 55172175 G A MROH7 Missense_Mutation p.R1211Q 0.20 tolerated(0.27) benign(0.213) TCGA-ER-A19M-06 1 57351605 57351605 C T C8A Silent p.F287F 0.28 TCGA-ER-A19M-06 1 57491689 57491689 C T DAB1 Missense_Mutation p.D251N 0.16 tolerated(0.05) possibly_damaging(0.836) TCGA-ER-A19M-06 1 59132748 59132748 G A MYSM1 Missense_Mutation p.P665S 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 1 61848985 61848985 C T NFIA Silent p.S386S 0.20 TCGA-ER-A19M-06 1 63868001 63868001 C T ALG6 Silent p.L82L 0.12 TCGA-ER-A19M-06 1 63998360 63998360 G C EFCAB7 Missense_Mutation p.R140P 0.18 tolerated(0.33) benign(0.002) TCGA-ER-A19M-06 1 64089131 64089131 G A PGM1 5'UTR 0.23 TCGA-ER-A19M-06 1 85031635 85031635 C T CTBS Missense_Mutation p.G196R 0.22 deleterious(0.03) benign(0.359) TCGA-ER-A19M-06 1 89250336 89250336 C T PKN2 Missense_Mutation p.R334C 0.28 tolerated(0.12) benign(0.134) TCGA-ER-A19M-06 20 10620099 10620099 C T JAG1 3'UTR 0.22 TCGA-ER-A19M-06 20 20350123 20350123 C T INSM1 Silent p.A404A 0.32 TCGA-ER-A19M-06 20 21493040 21493040 C T NKX2-2 Missense_Mutation p.D115N 0.24 tolerated(0.23) benign(0.034) TCGA-ER-A19M-06 20 2639369 2639369 C T IDH3B 3'UTR 0.34 TCGA-ER-A19M-06 20 30028419 30028419 G A DEFB123 5'UTR 0.25 TCGA-ER-A19M-06 20 3102730 3102730 G A UBOX5 Silent p.I185I 0.49 TCGA-ER-A19M-06 20 31601743 31601743 G A BPIFB2 Missense_Mutation p.E146K 0.15 tolerated(1) benign(0.085) TCGA-ER-A19M-06 20 34025399 34025399 G A GDF5 Missense_Mutation p.P104S 0.16 tolerated_low_confidence(0.13) benign(0.001) TCGA-ER-A19M-06 20 34085873 34085873 C T CEP250 Missense_Mutation p.P1211L 0.55 benign(0.094) TCGA-ER-A19M-06 20 35060416 35060416 G A DLGAP4 Missense_Mutation p.R99Q 0.33 tolerated(0.17) probably_damaging(0.998) TCGA-ER-A19M-06 20 39795344 39795344 C T PLCG1 Missense_Mutation p.R716C 0.44 deleterious(0) probably_damaging(0.997) TCGA-ER-A19M-06 20 42635417 42635417 G A TOX2 Silent p.S132S 0.15 TCGA-ER-A19M-06 20 43803610 43803610 G A PI3 Missense_Mutation p.G16E 0.36 tolerated(0.24) probably_damaging(0.999) TCGA-ER-A19M-06 20 43926816 43926816 C T MATN4 Missense_Mutation p.E474K 0.24 possibly_damaging(0.575) TCGA-ER-A19M-06 20 44845508 44845508 G A CDH22 Silent p.I265I 0.17 TCGA-ER-A19M-06 20 5903592 5903592 G A CHGB Missense_Mutation p.E268K 0.29 deleterious(0.01) probably_damaging(1) TCGA-ER-A19M-06 20 61959824 61959824 G A COL20A1 Missense_Mutation p.R1252H 0.24 tolerated(0.45) benign(0) TCGA-ER-A19M-06 20 62173661 62173661 G A SRMS Silent p.L267L 0.43 TCGA-ER-A19M-06 20 62191413 62191413 G A HELZ2 Missense_Mutation p.R2565C 0.15 tolerated(0.06) probably_damaging(1) TCGA-ER-A19M-06 21 31066362 31066362 C T GRIK1 Missense_Mutation p.E47K 0.14 deleterious(0.05) possibly_damaging(0.749) TCGA-ER-A19M-06 21 38137356 38137356 G A HLCS Missense_Mutation p.S546F 0.24 deleterious(0) probably_damaging(0.963) TCGA-ER-A19M-06 21 38467671 38467671 A T TTC3 Nonsense_Mutation p.K237* 0.17 TCGA-ER-A19M-06 21 43547301 43547301 C T UMODL1 Missense_Mutation p.T1288I 0.15 deleterious(0) probably_damaging(0.998) TCGA-ER-A19M-06 21 43786529 43786529 C T TFF1 Missense_Mutation p.A26T 0.19 tolerated(0.15) benign(0.008) TCGA-ER-A19M-06 21 45945695 45945695 G A TSPEAR Missense_Mutation p.P393S 0.28 tolerated(0.39) benign(0.063) TCGA-ER-A19M-06 21 47409530 47409530 C G COL6A1 Silent p.P289P 0.22 TCGA-ER-A19M-06 21 47836592 47836592 T G PCNT Missense_Mutation p.C2254G 0.27 possibly_damaging(0.587) TCGA-ER-A19M-06 22 16287624 16287624 C T POTEH Missense_Mutation p.D88N 0.35 tolerated_low_confidence(0.05) probably_damaging(0.995) TCGA-ER-A19M-06 22 17622112 17622112 G A CECR5 Silent p.L195L 0.34 TCGA-ER-A19M-06 22 19750792 19750792 C T TBX1 Missense_Mutation p.L147F 0.11 tolerated(0.17) possibly_damaging(0.879) TCGA-ER-A19M-06 22 22317153 22317153 G A TOP3B Silent p.L439L 0.45 TCGA-ER-A19M-06 22 29727892 29727892 G A AP1B1 Missense_Mutation p.P775S 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-ER-A19M-06 22 35679978 35679978 C T HMGXB4 Silent p.A413A 0.40 TCGA-ER-A19M-06 22 35947564 35947564 C T RASD2 Silent p.L96L 0.49 TCGA-ER-A19M-06 22 38934387 38934387 G A DMC1 Nonsense_Mutation p.R230* 0.21 TCGA-ER-A19M-06 22 40073345 40073345 G A CACNA1I Splice_Site p.X1619_splice 0.40 TCGA-ER-A19M-06 22 40073346 40073346 G A CACNA1I Missense_Mutation p.V1619M 0.40 deleterious(0) possibly_damaging(0.86) TCGA-ER-A19M-06 22 42180657 42180657 C T MEI1 Missense_Mutation p.S1072F 0.34 deleterious(0.03) possibly_damaging(0.735) TCGA-ER-A19M-06 22 42557354 42557354 C T TCF20 3'UTR 0.37 TCGA-ER-A19M-06 22 45197981 45197981 T G ARHGAP8 Missense_Mutation p.V157G 0.15 deleterious(0) probably_damaging(0.965) TCGA-ER-A19M-06 22 46656336 46656336 C T PKDREJ Missense_Mutation p.A962T 0.21 tolerated(0.09) benign(0.063) TCGA-ER-A19M-06 2 102626246 102626246 C A IL1R2 Missense_Mutation p.P97Q 0.20 deleterious(0.03) probably_damaging(0.956) TCGA-ER-A19M-06 2 113780333 113780333 G A IL36B Missense_Mutation p.S138F 0.22 tolerated_low_confidence(1) benign(0) TCGA-ER-A19M-06 2 119732137 119732137 G A MARCO Silent p.E203E 0.30 TCGA-ER-A19M-06 2 119915315 119915315 G A C1QL2 Silent p.F177F 0.21 TCGA-ER-A19M-06 2 1243538 1243538 C T SNTG2 Missense_Mutation p.P293L 0.29 tolerated(0.3) benign(0.002) TCGA-ER-A19M-06 2 137814374 137814374 C T THSD7B Missense_Mutation p.P175L 0.17 deleterious(0) possibly_damaging(0.595) TCGA-ER-A19M-06 2 138330037 138330037 G A THSD7B Missense_Mutation p.E1115K 0.17 deleterious(0.03) unknown(0) TCGA-ER-A19M-06 2 141571258 141571258 T A LRP1B Missense_Mutation p.E1776V 0.24 benign(0.403) TCGA-ER-A19M-06 2 152506890 152506890 G A NEB Silent p.L2411L 0.19 TCGA-ER-A19M-06 2 152527582 152527582 G A NEB Silent p.S1487S 0.11 TCGA-ER-A19M-06 2 158395120 158395120 G A ACVR1C Nonsense_Mutation p.R441* 0.17 TCGA-ER-A19M-06 2 163002098 163002098 G A GCG Missense_Mutation p.A115V 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A19M-06 2 166773864 166773864 G A TTC21B Missense_Mutation p.S601F 0.18 tolerated(0.07) benign(0.013) TCGA-ER-A19M-06 2 170009449 170009449 C T LRP2 Silent p.G4107G 0.23 TCGA-ER-A19M-06 2 170135906 170135906 C T LRP2 Missense_Mutation p.G514E 0.14 probably_damaging(1) TCGA-ER-A19M-06 2 170177374 170177374 G A LRP2 Missense_Mutation p.R34C 0.23 probably_damaging(0.982) TCGA-ER-A19M-06 2 170537668 170537668 G A CCDC173 Missense_Mutation p.T48I 0.29 tolerated(0.6) benign(0.077) TCGA-ER-A19M-06 2 171822314 171822314 C T GORASP2 Missense_Mutation p.P345S 0.29 tolerated(0.41) benign(0.011) TCGA-ER-A19M-06 2 179436015 179436015 C T TTN Silent p.K24948K 0.26 TCGA-ER-A19M-06 2 179497692 179497692 G A TTN Missense_Mutation p.S14389F 0.28 TCGA-ER-A19M-06 2 179593081 179593081 C T TTN Missense_Mutation p.M6490I 0.24 TCGA-ER-A19M-06 2 179595694 179595694 C T TTN Missense_Mutation p.D5900N 0.20 TCGA-ER-A19M-06 2 182399090 182399090 T C ITGA4 Missense_Mutation p.V959A 0.26 tolerated(0.53) benign(0.006) TCGA-ER-A19M-06 2 196891489 196891489 G A DNAH7 Missense_Mutation p.S221F 0.21 tolerated(0.1) possibly_damaging(0.463) TCGA-ER-A19M-06 2 197639929 197639929 G A GTF3C3 Missense_Mutation p.S581F 0.22 deleterious(0.01) possibly_damaging(0.825) TCGA-ER-A19M-06 2 198950796 198950796 G A PLCL1 Missense_Mutation p.G852E 0.25 tolerated(0.08) possibly_damaging(0.831) TCGA-ER-A19M-06 2 207516537 207516537 C T DYTN 3'UTR 0.11 TCGA-ER-A19M-06 2 21229306 21229306 G A APOB Silent p.D3478D 0.25 TCGA-ER-A19M-06 2 218925822 218925822 G A CXCR2P1 RNA 0.21 TCGA-ER-A19M-06 2 218999652 218999652 C T CXCR2 Missense_Mutation p.S43F 0.22 tolerated(0.73) benign(0.364) TCGA-ER-A19M-06 2 220284867 220284867 C T DES Missense_Mutation p.A210V 0.20 tolerated(0.1) benign(0.292) TCGA-ER-A19M-06 2 220440068 220440068 C T INHA Silent p.V307V 0.24 TCGA-ER-A19M-06 2 220498001 220498001 C T SLC4A3 Missense_Mutation p.P455L 0.24 tolerated(0.09) benign(0.11) TCGA-ER-A19M-06 2 226447447 226447447 C T NYAP2 Silent p.S438S 0.21 TCGA-ER-A19M-06 2 228004923 228004923 C T COL4A4 Missense_Mutation p.G49E 0.20 probably_damaging(0.993) TCGA-ER-A19M-06 2 228973582 228973582 C T SPHKAP Missense_Mutation p.G71D 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 2 233899378 233899378 G A NEU2 Missense_Mutation p.G252R 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 2 233899379 233899379 G A NEU2 Missense_Mutation p.G252E 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 2 234590986 234590986 G A UGT1A7 Missense_Mutation p.E135K 0.16 tolerated(1) benign(0.012) TCGA-ER-A19M-06 2 234675725 234675725 G A UGT1A10 Missense_Mutation p.V301I 0.23 tolerated(0.09) benign(0.004) TCGA-ER-A19M-06 2 235962300 235962300 G A SH3BP4 Missense_Mutation p.R911Q 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-ER-A19M-06 2 238283353 238283353 C T COL6A3 Silent p.R1127R 0.13 TCGA-ER-A19M-06 2 238289678 238289678 C T COL6A3 Missense_Mutation p.E593K 0.29 benign(0.085) TCGA-ER-A19M-06 2 23980650 23980650 G A ATAD2B Missense_Mutation p.S1239L 0.21 deleterious(0.01) possibly_damaging(0.543) TCGA-ER-A19M-06 2 240984604 240984604 C T OR6B3 Missense_Mutation p.E296K 0.25 deleterious(0.01) benign(0.178) TCGA-ER-A19M-06 2 25059846 25059846 G A ADCY3 Silent p.P534P 0.13 TCGA-ER-A19M-06 2 26951064 26951064 C T KCNK3 Silent p.G271G 0.26 TCGA-ER-A19M-06 2 28627122 28627122 C A FOSL2 Missense_Mutation p.P84H 0.21 tolerated(0.32) benign(0.001) TCGA-ER-A19M-06 2 28627123 28627123 C T FOSL2 Silent p.P84P 0.21 TCGA-ER-A19M-06 2 28635284 28635284 C T FOSL2 Missense_Mutation p.S317F 0.12 tolerated(0.14) probably_damaging(0.979) TCGA-ER-A19M-06 2 28635285 28635285 C T FOSL2 Silent p.S317S 0.10 TCGA-ER-A19M-06 2 29474030 29474030 C T ALK Silent p.G715G 0.22 TCGA-ER-A19M-06 2 31181291 31181291 G A GALNT14 Silent p.I151I 0.26 TCGA-ER-A19M-06 2 3597966 3597966 G A RNASEH1 Missense_Mutation p.P169L 0.20 deleterious(0.01) benign(0.376) TCGA-ER-A19M-06 2 44187737 44187737 G A LRPPRC Nonsense_Mutation p.Q509* 0.14 TCGA-ER-A19M-06 2 48915809 48915809 C T LHCGR Missense_Mutation p.G376E 0.12 deleterious(0) probably_damaging(0.987) TCGA-ER-A19M-06 2 63631766 63631766 C T WDPCP Nonsense_Mutation p.W284* 0.16 TCGA-ER-A19M-06 2 69174358 69174358 C T GKN2 Missense_Mutation p.R79K 0.18 tolerated(0.3) benign(0.026) TCGA-ER-A19M-06 2 72362009 72362009 C T CYP26B1 Missense_Mutation p.E248K 0.27 deleterious(0.03) possibly_damaging(0.845) TCGA-ER-A19M-06 2 73450210 73450210 C T SMYD5 Missense_Mutation p.T251I 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-ER-A19M-06 2 74699849 74699849 A C MRPL53 5'UTR 0.35 TCGA-ER-A19M-06 2 80646611 80646611 T A CTNNA2 Missense_Mutation p.F392Y 0.33 deleterious(0.03) benign(0.293) TCGA-ER-A19M-06 2 87042742 87042742 G A CD8B Silent p.I240I 0.21 TCGA-ER-A19M-06 2 89513186 89513186 G A IGKV1-27 Nonsense_Mutation p.Q25* 0.14 TCGA-ER-A19M-06 3 100093866 100093866 C T TOMM70A Missense_Mutation p.G408E 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 3 100093867 100093867 C T TOMM70A Missense_Mutation p.G408R 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 3 100349641 100349641 G A GPR128 Missense_Mutation p.D108N 0.40 tolerated(0.75) benign(0.001) TCGA-ER-A19M-06 3 100447693 100447693 C T TFG Missense_Mutation p.P136S 0.49 tolerated(0.07) benign(0.018) TCGA-ER-A19M-06 3 100605139 100605139 C T ABI3BP Missense_Mutation p.D171N 0.40 tolerated(0.37) possibly_damaging(0.539) TCGA-ER-A19M-06 3 101540294 101540294 C A NXPE3 Missense_Mutation p.F392L 0.43 tolerated(0.4) benign(0.008) TCGA-ER-A19M-06 3 101540295 101540295 C T NXPE3 Missense_Mutation p.L393F 0.44 deleterious(0.01) possibly_damaging(0.86) TCGA-ER-A19M-06 3 113737711 113737711 T C KIAA1407 Missense_Mutation p.Q326R 0.19 deleterious(0.02) possibly_damaging(0.602) TCGA-ER-A19M-06 3 119886926 119886926 G A GPR156 Silent p.S466S 0.43 TCGA-ER-A19M-06 3 121712461 121712461 C T ILDR1 Missense_Mutation p.E379K 0.21 tolerated(0.08) benign(0.416) TCGA-ER-A19M-06 3 123444828 123444828 C T MYLK Silent p.R538R 0.33 TCGA-ER-A19M-06 3 124639106 124639106 C T MUC13 Missense_Mutation p.G258R 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19M-06 3 126291210 126291210 G A TXNRD3NB Silent p.P59P 0.20 TCGA-ER-A19M-06 3 127413947 127413947 C T MGLL Silent p.R229R 0.15 TCGA-ER-A19M-06 3 133478170 133478170 C T TF Silent p.I400I 0.20 TCGA-ER-A19M-06 3 138762903 138762903 C T PRR23C Missense_Mutation p.S187N 0.14 tolerated(0.32) benign(0.305) TCGA-ER-A19M-06 3 14549126 14549126 G A GRIP2 RNA 0.54 TCGA-ER-A19M-06 3 148459237 148459237 C T AGTR1 Nonsense_Mutation p.R139* 0.49 TCGA-ER-A19M-06 3 160150895 160150895 A G SMC4 Silent p.V1204V 0.35 TCGA-ER-A19M-06 3 167033611 167033611 C T ZBBX Missense_Mutation p.E401K 0.29 deleterious(0.03) benign(0.377) TCGA-ER-A19M-06 3 168833219 168833219 G A MECOM Missense_Mutation p.S691F 0.20 deleterious(0.01) benign(0.059) TCGA-ER-A19M-06 3 169867026 169867026 G A PHC3 Missense_Mutation p.L141F 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 3 171452666 171452666 G A PLD1 Missense_Mutation p.L177F 0.31 tolerated(0.17) benign(0.002) TCGA-ER-A19M-06 3 180366006 180366006 A G CCDC39 Silent p.L437L 0.41 TCGA-ER-A19M-06 3 183056697 183056697 G A MCF2L2 Missense_Mutation p.P126L 0.25 deleterious(0) probably_damaging(0.99) TCGA-ER-A19M-06 3 183960642 183960642 G A ALG3 Silent p.L371L 0.36 TCGA-ER-A19M-06 3 189688638 189688638 G A LEPREL1 Silent p.F620F 0.31 TCGA-ER-A19M-06 3 193028470 193028470 G A ATP13A5 Missense_Mutation p.P828S 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 3 32757801 32757801 C T CNOT10 Nonsense_Mutation p.Q280* 0.32 TCGA-ER-A19M-06 3 35770968 35770968 C T ARPP21 Missense_Mutation p.L433F 0.41 deleterious(0.04) benign(0.381) TCGA-ER-A19M-06 3 36898459 36898459 G A TRANK1 Silent p.I874I 0.62 TCGA-ER-A19M-06 3 38628988 38628988 C T SCN5A Missense_Mutation p.G780D 0.37 deleterious(0) probably_damaging(0.976) TCGA-ER-A19M-06 3 38628989 38628989 C T SCN5A Missense_Mutation p.G780S 0.36 tolerated(0.07) probably_damaging(0.947) TCGA-ER-A19M-06 3 40291797 40291797 G A MYRIP Missense_Mutation p.D783N 0.50 tolerated(0.25) benign(0.007) TCGA-ER-A19M-06 3 42572997 42572997 C T VIPR1 Silent p.I275I 0.50 TCGA-ER-A19M-06 3 42734629 42734629 G A HHATL Missense_Mutation p.L444F 0.52 deleterious(0.01) benign(0.155) TCGA-ER-A19M-06 3 45517957 45517957 C T LARS2 Intron 0.46 TCGA-ER-A19M-06 3 48452292 48452292 G A PLXNB1 Missense_Mutation p.R1801C 0.32 deleterious(0.02) benign(0.008) TCGA-ER-A19M-06 3 48557221 48557221 G A PFKFB4 Missense_Mutation p.P457S 0.59 benign(0) TCGA-ER-A19M-06 3 49454912 49454912 C - AMT 3'UTR 0.29 TCGA-ER-A19M-06 3 49569036 49569036 G A DAG1 Silent p.G364G 0.43 TCGA-ER-A19M-06 3 49940747 49940747 G A MST1R Missense_Mutation p.P99L 0.56 deleterious(0) possibly_damaging(0.899) TCGA-ER-A19M-06 3 50357173 50357173 G A HYAL2 Missense_Mutation p.P250S 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 3 52813518 52813518 C T ITIH1 Nonsense_Mutation p.Q161* 0.60 TCGA-ER-A19M-06 3 56468625 56468625 G A ERC2 Silent p.S137S 0.22 TCGA-ER-A19M-06 3 58134494 58134494 C T FLNB Silent p.A2033A 0.33 TCGA-ER-A19M-06 3 58385103 58385103 C T PXK Missense_Mutation p.P394S 0.26 deleterious(0.03) benign(0.364) TCGA-ER-A19M-06 3 97311499 97311499 C T EPHA6 Silent p.F810F 0.09 TCGA-ER-A19M-06 3 97806704 97806704 A T OR5AC2 Nonsense_Mutation p.K230* 0.21 TCGA-ER-A19M-06 4 114275389 114275389 C T ANK2 Missense_Mutation p.S1872L 0.52 possibly_damaging(0.59) TCGA-ER-A19M-06 4 185550301 185550301 G A CASP3 3'UTR 0.75 TCGA-ER-A19M-06 4 36168575 36168584 ATTATTTCAA - ARAP2 Frame_Shift_Del p.F648Sfs*28 0.37 TCGA-ER-A19M-06 4 40936494 40936494 G A APBB2 Silent p.I411I 0.57 TCGA-ER-A19M-06 4 46060239 46060239 G A GABRG1 Missense_Mutation p.S304L 0.40 tolerated(0.1) probably_damaging(0.996) TCGA-ER-A19M-06 4 47939335 47939335 G A CNGA1 Silent p.I461I 0.43 TCGA-ER-A19M-06 4 6107519 6107519 G A JAKMIP1 Missense_Mutation p.T102I 0.66 tolerated(0.39) benign(0.017) TCGA-ER-A19M-06 4 69512957 69512957 C T UGT2B15 Nonsense_Mutation p.W486* 0.45 TCGA-ER-A19M-06 4 70504813 70504813 G A UGT2A2 Silent p.F182F 0.19 TCGA-ER-A19M-06 4 860229 860229 G A GAK Missense_Mutation p.S989F 0.51 deleterious(0.01) possibly_damaging(0.62) TCGA-ER-A19M-06 4 99850222 99850222 G A EIF4E Intron 0.40 TCGA-ER-A19M-06 5 112177991 112177991 C T APC Missense_Mutation p.P2234S 0.56 probably_damaging(1) TCGA-ER-A19M-06 5 1240715 1240715 C T SLC6A18 Silent p.I305I 0.12 TCGA-ER-A19M-06 5 128302094 128302094 G A SLC27A6 Silent p.R88R 0.56 TCGA-ER-A19M-06 5 132232208 132232208 A C AFF4 Missense_Mutation p.L705R 0.53 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 5 13777373 13777373 C T DNAH5 Missense_Mutation p.D3015N 0.52 possibly_damaging(0.822) TCGA-ER-A19M-06 5 137780131 137780131 C T REEP2 Silent p.I70I 0.58 TCGA-ER-A19M-06 5 13839571 13839571 C T DNAH5 Missense_Mutation p.E1926K 0.24 benign(0.305) TCGA-ER-A19M-06 5 140250813 140250813 C T PCDHA11 Missense_Mutation p.L709F 0.51 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-ER-A19M-06 5 140306769 140306769 G A PCDHAC1 Missense_Mutation p.D98N 0.60 deleterious(0) benign(0.342) TCGA-ER-A19M-06 5 140346522 140346522 C T PCDHAC2 Silent p.L57L 0.35 TCGA-ER-A19M-06 5 140553895 140553895 C T PCDHB7 Silent p.S493S 0.50 TCGA-ER-A19M-06 5 140573034 140573034 C A PCDHB10 Silent p.L303L 0.51 TCGA-ER-A19M-06 5 140589572 140589572 G A PCDHB12 Missense_Mutation p.V365I 0.61 tolerated_low_confidence(0.1) benign(0.107) TCGA-ER-A19M-06 5 140744722 140744722 G A PCDHGA5 Silent p.G275G 0.51 TCGA-ER-A19M-06 5 149497193 149497193 G A PDGFRB Missense_Mutation p.P1042L 0.54 tolerated(0.59) benign(0.091) TCGA-ER-A19M-06 5 149497194 149497194 G A PDGFRB Missense_Mutation p.P1042S 0.55 tolerated(1) benign(0.024) TCGA-ER-A19M-06 5 149502729 149502729 C T PDGFRB Missense_Mutation p.G687R 0.40 deleterious(0) probably_damaging(0.986) TCGA-ER-A19M-06 5 154396482 154396482 C T KIF4B Silent p.I1021I 0.37 TCGA-ER-A19M-06 5 156667160 156667160 G A ITK Missense_Mutation p.D314N 0.41 tolerated(0.84) benign(0.004) TCGA-ER-A19M-06 5 24509862 24509862 G A CDH10 Missense_Mutation p.P357S 0.30 tolerated(0.13) probably_damaging(0.979) TCGA-ER-A19M-06 5 36035673 36035673 C T UGT3A2 3'UTR 0.30 TCGA-ER-A19M-06 5 36039616 36039616 C T UGT3A2 Silent p.V346V 0.22 TCGA-ER-A19M-06 5 36052065 36052065 G A UGT3A2 Missense_Mutation p.S73L 0.48 deleterious(0.02) benign(0.378) TCGA-ER-A19M-06 5 38493882 38493882 G A LIFR Missense_Mutation p.L631F 0.23 deleterious(0.01) benign(0.365) TCGA-ER-A19M-06 5 42718612 42718612 G A GHR Missense_Mutation p.E335K 0.38 tolerated(0.05) probably_damaging(0.953) TCGA-ER-A19M-06 5 68665385 68665385 G A TAF9 Intron 0.68 TCGA-ER-A19M-06 5 68665386 68665386 G A TAF9 Intron 0.68 TCGA-ER-A19M-06 5 82808175 82808175 C T VCAN Silent p.F334F 0.63 TCGA-ER-A19M-06 6 100896494 100896494 C T SIM1 Missense_Mutation p.D202N 0.34 deleterious(0.04) possibly_damaging(0.691) TCGA-ER-A19M-06 6 110746229 110746229 G A SLC22A16 Silent p.T527T 0.38 TCGA-ER-A19M-06 6 117709096 117709096 C T ROS1 Missense_Mutation p.E621K 0.37 tolerated(0.25) benign(0.004) TCGA-ER-A19M-06 6 119327297 119327297 G A FAM184A Intron 0.24 TCGA-ER-A19M-06 6 136878955 136878955 C T MAP3K5 Missense_Mutation p.G1356R 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A19M-06 6 137519111 137519111 A T IFNGR1 3'UTR 0.52 TCGA-ER-A19M-06 6 138564110 138564110 C T KIAA1244 Missense_Mutation p.P189S 0.27 tolerated(0.75) benign(0.001) TCGA-ER-A19M-06 6 155451201 155451201 C T TIAM2 Missense_Mutation p.P282S 0.26 tolerated(0.19) benign(0.016) TCGA-ER-A19M-06 6 158902309 158902309 G A TULP4 Missense_Mutation p.D492N 0.26 deleterious(0.05) probably_damaging(0.995) TCGA-ER-A19M-06 6 160978466 160978466 G A LPA Missense_Mutation p.P1590L 0.23 tolerated(0.09) benign(0.065) TCGA-ER-A19M-06 6 168462535 168462535 G A FRMD1 Missense_Mutation p.R333C 0.29 tolerated(0.06) possibly_damaging(0.786) TCGA-ER-A19M-06 6 27834900 27834900 C T HIST1H1B Silent p.G136G 0.30 TCGA-ER-A19M-06 6 27834901 27834901 C T HIST1H1B Missense_Mutation p.G136E 0.30 tolerated(0.11) unknown(0) TCGA-ER-A19M-06 6 32729552 32729552 C T HLA-DQB2 Silent p.R83R 0.30 TCGA-ER-A19M-06 6 34511861 34511861 G A SPDEF Silent p.S124S 0.22 TCGA-ER-A19M-06 6 35987363 35987363 C T SLC26A8 Missense_Mutation p.R41K 0.17 tolerated(0.18) benign(0.015) TCGA-ER-A19M-06 6 40399596 40399596 T A LRFN2 Missense_Mutation p.K419N 0.12 deleterious(0.04) benign(0.097) TCGA-ER-A19M-06 6 4119470 4119470 G A ECI2 Missense_Mutation p.P279S 0.42 deleterious(0.01) possibly_damaging(0.896) TCGA-ER-A19M-06 6 42890791 42890791 C T PTCRA Silent p.L29L 0.43 TCGA-ER-A19M-06 6 43113066 43113066 G A PTK7 Missense_Mutation p.E854K 0.28 deleterious(0.01) probably_damaging(1) TCGA-ER-A19M-06 6 49819840 49819840 C T CRISP1 Silent p.K23K 0.36 TCGA-ER-A19M-06 6 52843164 52843164 T C GSTA4 3'UTR 0.11 TCGA-ER-A19M-06 6 54735221 54735221 A T FAM83B Missense_Mutation p.E59D 0.15 tolerated(0.46) benign(0.033) TCGA-ER-A19M-06 6 55216206 55216206 C T GFRAL Nonsense_Mutation p.Q176* 0.17 TCGA-ER-A19M-06 6 79787191 79787191 C T PHIP Missense_Mutation p.E55K 0.20 tolerated(0.1) benign(0.01) TCGA-ER-A19M-06 6 86324800 86324800 G A SYNCRIP Missense_Mutation p.P516S 0.40 tolerated(0.11) unknown(0) TCGA-ER-A19M-06 6 87967172 87967172 C T ZNF292 Silent p.F1275F 0.14 TCGA-ER-A19M-06 6 89895099 89895099 C T GABRR1 Silent p.R242R 0.37 TCGA-ER-A19M-06 6 90418324 90418324 G A MDN1 Missense_Mutation p.P2597S 0.41 possibly_damaging(0.87) TCGA-ER-A19M-06 6 90472215 90472215 G A MDN1 Missense_Mutation p.P727S 0.21 probably_damaging(1) TCGA-ER-A19M-06 6 93965732 93965732 G A EPHA7 Silent p.V732V 0.40 TCGA-ER-A19M-06 7 100150977 100150977 C T AGFG2 Missense_Mutation p.P147S 0.54 tolerated(0.08) possibly_damaging(0.479) TCGA-ER-A19M-06 7 105098310 105098310 G A PUS7 Missense_Mutation p.A638V 0.53 deleterious(0) probably_damaging(0.996) TCGA-ER-A19M-06 7 105644979 105644979 C T CDHR3 Nonsense_Mutation p.R300* 0.54 TCGA-ER-A19M-06 7 115594693 115594693 G A TFEC Missense_Mutation p.T129I 0.33 deleterious(0.01) possibly_damaging(0.536) TCGA-ER-A19M-06 7 126883311 126883311 G A GRM8 5'UTR 0.51 TCGA-ER-A19M-06 7 128038624 128038624 G A IMPDH1 Silent p.I306I 0.36 TCGA-ER-A19M-06 7 128490508 128490508 C T FLNC Missense_Mutation p.P1790L 0.29 deleterious(0.01) probably_damaging(1) TCGA-ER-A19M-06 7 130007358 130007358 G A CPA5 Missense_Mutation p.M328I 0.24 deleterious(0) possibly_damaging(0.877) TCGA-ER-A19M-06 7 137776576 137776576 C T AKR1D1 Silent p.V108V 0.32 TCGA-ER-A19M-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-ER-A19M-06 7 142378962 142378962 G A MTRNR2L6 3'Flank 0.33 TCGA-ER-A19M-06 7 142572717 142572717 C T TRPV6 Missense_Mutation p.R409K 0.33 tolerated(0.07) benign(0.11) TCGA-ER-A19M-06 7 142575489 142575489 G A TRPV6 Silent p.L88L 0.38 TCGA-ER-A19M-06 7 142626174 142626174 C T TRPV5 Missense_Mutation p.E177K 0.33 deleterious(0.01) probably_damaging(0.921) TCGA-ER-A19M-06 7 143827120 143827120 G A OR2A14 Silent p.R305R 0.32 TCGA-ER-A19M-06 7 146997262 146997262 G A CNTNAP2 Missense_Mutation p.E460K 0.31 deleterious(0.01) benign(0.092) TCGA-ER-A19M-06 7 150324783 150324783 C T GIMAP6 3'UTR 0.30 TCGA-ER-A19M-06 7 150554921 150554921 A G AOC1 Missense_Mutation p.T455A 0.29 tolerated(0.05) benign(0.383) TCGA-ER-A19M-06 7 150769181 150769181 C T SLC4A2 Silent p.I831I 0.29 TCGA-ER-A19M-06 7 157388004 157388004 C T PTPRN2 Missense_Mutation p.D808N 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 7 18687413 18687413 G A HDAC9 Silent p.S347S 0.44 TCGA-ER-A19M-06 7 27186893 27186893 C T HOXA6 Intron 0.21 TCGA-ER-A19M-06 7 34889318 34889318 C T NPSR1 Intron 0.45 TCGA-ER-A19M-06 7 44040865 44040865 G A SPDYE1 Missense_Mutation p.D81N 0.14 tolerated(0.19) benign(0.109) TCGA-ER-A19M-06 7 44302605 44302605 G A CAMK2B Silent p.I73I 0.42 TCGA-ER-A19M-06 7 47832359 47832359 C T PKD1L1 Missense_Mutation p.E2798K 0.12 deleterious(0) probably_damaging(0.989) TCGA-ER-A19M-06 7 53103599 53103599 G A POM121L12 Missense_Mutation p.E79K 0.35 tolerated(0.81) benign(0.018) TCGA-ER-A19M-06 7 57188167 57188167 G A ZNF479 Missense_Mutation p.H319Y 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19M-06 7 57528865 57528865 G A ZNF716 Missense_Mutation p.R233K 0.23 tolerated(0.5) benign(0.172) TCGA-ER-A19M-06 7 71036309 71036309 G A WBSCR17 Silent p.R334R 0.34 TCGA-ER-A19M-06 7 73245363 73245363 C T CLDN4 5'UTR 0.15 TCGA-ER-A19M-06 7 76033764 76033764 G A SRCRB4D 5'UTR 0.35 TCGA-ER-A19M-06 7 87407148 87407148 A T RUNDC3B Missense_Mutation p.N295I 0.40 deleterious(0.04) benign(0.067) TCGA-ER-A19M-06 7 87407149 87407149 C T RUNDC3B Silent p.N295N 0.40 TCGA-ER-A19M-06 7 92848776 92848776 G A HEPACAM2 Intron 0.53 TCGA-ER-A19M-06 7 95442563 95442563 A T DYNC1I1 Silent p.P93P 0.46 TCGA-ER-A19M-06 8 110457107 110457107 C T PKHD1L1 Missense_Mutation p.S1670L 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 8 110530420 110530420 C T PKHD1L1 Missense_Mutation p.S3905F 0.18 deleterious(0) possibly_damaging(0.83) TCGA-ER-A19M-06 8 121357791 121357791 C T COL14A1 Missense_Mutation p.P1689L 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19M-06 8 133627307 133627307 G A LRRC6 Silent p.I317I 0.22 TCGA-ER-A19M-06 8 141774508 141774508 A T PTK2 Intron 0.54 TCGA-ER-A19M-06 8 144808130 144808130 G A FAM83H Silent p.F1167F 0.24 TCGA-ER-A19M-06 8 1649497 1649497 C T DLGAP2 Silent p.S951S 0.27 TCGA-ER-A19M-06 8 26481725 26481725 C T DPYSL2 Missense_Mutation p.A127V 0.38 deleterious(0.02) possibly_damaging(0.504) TCGA-ER-A19M-06 8 27288406 27288406 G A PTK2B Missense_Mutation p.R228Q 0.23 deleterious(0.02) possibly_damaging(0.577) TCGA-ER-A19M-06 8 30700585 30700585 G A TEX15 Silent p.H1983H 0.50 TCGA-ER-A19M-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.33 tolerated(1) benign(0.002) TCGA-ER-A19M-06 8 3200918 3200918 C T CSMD1 Missense_Mutation p.E1177K 0.30 benign(0.087) TCGA-ER-A19M-06 8 33356668 33356668 C T MAK16 3'UTR 0.38 TCGA-ER-A19M-06 8 54723722 54723722 A T ATP6V1H Splice_Site p.X193_splice 0.19 TCGA-ER-A19M-06 8 55370819 55370819 G A SOX17 Missense_Mutation p.D41N 0.53 deleterious(0.01) probably_damaging(0.956) TCGA-ER-A19M-06 8 67040673 67040673 G A TRIM55 Silent p.V101V 0.18 TCGA-ER-A19M-06 8 73849751 73849751 G A KCNB2 Missense_Mutation p.E721K 0.35 tolerated_low_confidence(0.23) benign(0.044) TCGA-ER-A19M-06 8 77616651 77616651 G A ZFHX4 Missense_Mutation p.D110N 0.45 possibly_damaging(0.728) TCGA-ER-A19M-06 8 77764874 77764874 G A ZFHX4 Missense_Mutation p.G1906E 0.27 probably_damaging(0.969) TCGA-ER-A19M-06 9 102590532 102590532 G A NR4A3 Missense_Mutation p.E81K 0.53 deleterious(0.01) benign(0.318) TCGA-ER-A19M-06 9 104448931 104448931 C T GRIN3A Missense_Mutation p.M417I 0.45 tolerated(0.09) benign(0.004) TCGA-ER-A19M-06 9 107298805 107298805 G A OR13C3 Missense_Mutation p.S97F 0.56 deleterious(0) benign(0.216) TCGA-ER-A19M-06 9 126429330 126429330 C T DENND1A Missense_Mutation p.R161K 0.45 tolerated(0.26) benign(0.304) TCGA-ER-A19M-06 9 134406032 134406032 A C UCK1 Missense_Mutation p.S42A 0.46 deleterious(0) benign(0.355) TCGA-ER-A19M-06 9 137023158 137023158 C T WDR5 3'UTR 0.62 TCGA-ER-A19M-06 9 33385282 33385282 C T AQP7 Silent p.G250G 0.33 TCGA-ER-A19M-06 9 5335324 5335324 C G RLN1 Missense_Mutation p.R162P 0.95 deleterious(0.02) benign(0.128) TCGA-ER-A19M-06 9 6793085 6793085 C T KDM4C Missense_Mutation p.L33F 0.37 deleterious(0) probably_damaging(0.997) TCGA-ER-A19M-06 9 79461540 79461540 C T PRUNE2 Silent p.Q133Q 0.47 TCGA-ER-A19M-06 9 8404586 8404586 C T PTPRD Silent p.A1387A 0.22 TCGA-ER-A19M-06 X 101095999 101095999 T A NXF5 Missense_Mutation p.N157Y 0.46 deleterious(0) possibly_damaging(0.771) TCGA-ER-A19M-06 X 105011663 105011663 C T IL1RAPL2 3'UTR 0.50 TCGA-ER-A19M-06 X 105277391 105277391 G A SERPINA7 3'UTR 0.67 TCGA-ER-A19M-06 X 112022805 112022805 G A AMOT Silent p.S859S 0.54 TCGA-ER-A19M-06 X 119496050 119496050 G A ATP1B4 Silent p.R9R 0.46 TCGA-ER-A19M-06 X 123514403 123514403 C T TENM1 Missense_Mutation p.E2728K 0.52 tolerated(0.1) benign(0.087) TCGA-ER-A19M-06 X 130411846 130411846 C T IGSF1 Silent p.L773L 0.57 TCGA-ER-A19M-06 X 151336693 151336693 C T GABRA3 3'UTR 0.28 TCGA-ER-A19M-06 X 153070079 153070079 G A PDZD4 Missense_Mutation p.P347S 0.59 tolerated(0.72) possibly_damaging(0.899) TCGA-ER-A19M-06 X 153496064 153496064 G A OPN1MW2 Silent p.K264K 0.42 TCGA-ER-A19M-06 X 18183155 18183155 G A BEND2 Missense_Mutation p.P792S 0.34 tolerated(0.75) benign(0.046) TCGA-ER-A19M-06 X 37027774 37027774 C T FAM47C Missense_Mutation p.P431S 0.49 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-ER-A19M-06 X 48545242 48545242 G A WAS Missense_Mutation p.R211Q 0.56 deleterious(0) probably_damaging(0.999) TCGA-ER-A19M-06 X 49958119 49958119 C T AKAP4 Nonsense_Mutation p.W415* 0.55 TCGA-ER-A19M-06 X 52826385 52826385 C T SPANXN5 Missense_Mutation p.E2K 0.48 tolerated_low_confidence(0.11) benign(0.399) TCGA-ER-A19M-06 X 53576271 53576271 G A HUWE1 Silent p.S3228S 0.49 TCGA-ER-A19M-06 X 57407403 57407403 G A FAAH2 Missense_Mutation p.D313N 0.44 deleterious(0.02) possibly_damaging(0.819) TCGA-ER-A19M-06 X 62885799 62885799 G A ARHGEF9 Silent p.F341F 0.40 TCGA-ER-A19M-06 X 70587971 70587971 C T TAF1 Silent p.S121S 0.52 TCGA-ER-A19M-06 X 73961692 73961692 G A KIAA2022 Silent p.F900F 0.64 TCGA-ER-A19M-06 X 77912994 77912994 G A ZCCHC5 Silent p.F308F 0.58 TCGA-ER-A19N-06 10 114044409 114044409 G A TECTB Missense_Mutation p.E65K 0.23 deleterious(0.04) benign(0.435) TCGA-ER-A19N-06 10 115485222 115485222 A G CASP7 Missense_Mutation p.K193E 0.12 tolerated(0.14) benign(0.275) TCGA-ER-A19N-06 10 115985825 115985825 C T TDRD1 Missense_Mutation p.R1009C 0.15 deleterious(0) probably_damaging(0.988) TCGA-ER-A19N-06 10 116044669 116044669 G A VWA2 Missense_Mutation p.E313K 0.39 deleterious(0.01) benign(0.162) TCGA-ER-A19N-06 10 122665478 122665478 C T WDR11 Missense_Mutation p.L1128F 0.17 deleterious(0.01) benign(0.082) TCGA-ER-A19N-06 10 123263424 123263424 G A FGFR2 Missense_Mutation p.S441F 0.17 deleterious(0) probably_damaging(0.956) TCGA-ER-A19N-06 10 129209130 129209130 G T DOCK1 Missense_Mutation p.R1436L 0.17 deleterious(0.01) possibly_damaging(0.846) TCGA-ER-A19N-06 10 129906706 129906706 G A MKI67 Missense_Mutation p.P1133L 0.17 tolerated(0.72) benign(0.042) TCGA-ER-A19N-06 10 131640555 131640555 C T EBF3 Silent p.E390E 0.30 TCGA-ER-A19N-06 10 133948566 133948566 G A JAKMIP3 Missense_Mutation p.D291N 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19N-06 10 17087008 17087008 C A CUBN Missense_Mutation p.A1224S 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-ER-A19N-06 10 17087009 17087009 C T CUBN Silent p.L1223L 0.11 TCGA-ER-A19N-06 10 22675742 22675742 G A SPAG6 Missense_Mutation p.E178K 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 10 24762678 24762678 G A KIAA1217 Silent p.R456R 0.20 TCGA-ER-A19N-06 10 26241128 26241128 G A MYO3A Missense_Mutation p.G30E 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 10 28420539 28420539 C T MPP7 Missense_Mutation p.E133K 0.16 deleterious(0) benign(0.076) TCGA-ER-A19N-06 10 30336619 30336619 C T KIAA1462 Silent p.Q41Q 0.14 TCGA-ER-A19N-06 10 38647417 38647417 C T HSD17B7P2 RNA 0.24 TCGA-ER-A19N-06 10 49393605 49393605 G A FRMPD2 Missense_Mutation p.R784C 0.28 deleterious(0.03) probably_damaging(0.958) TCGA-ER-A19N-06 10 5144346 5144346 G A AKR1C3 Silent p.S208S 0.18 TCGA-ER-A19N-06 10 5435860 5435860 C T TUBAL3 Missense_Mutation p.A321T 0.17 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-ER-A19N-06 10 55600205 55600205 C T PCDH15 Silent p.V1286V 0.18 TCGA-ER-A19N-06 10 59955965 59955965 C T IPMK Missense_Mutation p.E375K 0.19 tolerated(0.22) possibly_damaging(0.881) TCGA-ER-A19N-06 10 61831494 61831494 G A ANK3 Missense_Mutation p.P3049S 0.22 probably_damaging(0.992) TCGA-ER-A19N-06 10 61946488 61946488 C T ANK3 Silent p.V690V 0.24 TCGA-ER-A19N-06 10 65140161 65140161 C T JMJD1C Missense_Mutation p.E84K 0.13 deleterious(0) probably_damaging(0.993) TCGA-ER-A19N-06 10 69948796 69948796 C T MYPN Silent p.I946I 0.17 TCGA-ER-A19N-06 10 75289504 75289504 C A USP54 Missense_Mutation p.S665I 0.14 deleterious(0) probably_damaging(0.997) TCGA-ER-A19N-06 10 75530515 75530515 C T SEC24C Missense_Mutation p.L1035F 0.20 deleterious(0) possibly_damaging(0.795) TCGA-ER-A19N-06 10 8100409 8100409 G A GATA3 Missense_Mutation p.G128E 0.14 tolerated(0.08) benign(0.382) TCGA-ER-A19N-06 10 96731971 96731971 C T CYP2C9 Silent p.L310L 0.10 TCGA-ER-A19N-06 10 98118681 98118681 C T OPALIN 5'UTR 0.17 TCGA-ER-A19N-06 10 98180793 98180793 C T TLL2 Missense_Mutation p.M281I 0.12 deleterious(0.01) benign(0.289) TCGA-ER-A19N-06 10 98995023 98995023 G A ARHGAP19 Missense_Mutation p.S412F 0.16 tolerated(0.07) benign(0.013) TCGA-ER-A19N-06 11 100170035 100170035 C T CNTN5 Missense_Mutation p.P843S 0.20 deleterious(0.04) probably_damaging(1) TCGA-ER-A19N-06 11 101762107 101762107 C T ANGPTL5 Missense_Mutation p.G357E 0.18 deleterious(0.01) probably_damaging(0.959) TCGA-ER-A19N-06 11 117870008 117870008 G A IL10RA Silent p.L463L 0.21 TCGA-ER-A19N-06 11 121038915 121038915 G A TECTA Silent p.K1913K 0.11 TCGA-ER-A19N-06 11 121491909 121491909 G A SORL1 Missense_Mutation p.G2009E 0.24 tolerated(1) possibly_damaging(0.876) TCGA-ER-A19N-06 11 123909307 123909307 C T OR10G7 Missense_Mutation p.M134I 0.22 tolerated(1) benign(0.005) TCGA-ER-A19N-06 11 125648651 125648651 G A PATE2 Silent p.L6L 0.41 TCGA-ER-A19N-06 11 134257527 134257527 C T B3GAT1 Silent p.A9A 0.14 TCGA-ER-A19N-06 11 13513865 13513865 G A PTH 3'UTR 0.19 TCGA-ER-A19N-06 11 18195672 18195672 T C MRGPRX4 Missense_Mutation p.V290A 0.35 tolerated(0.06) benign(0.259) TCGA-ER-A19N-06 11 20869159 20869159 G A NELL1 Silent p.R122R 0.25 TCGA-ER-A19N-06 11 33689530 33689530 G A KIAA1549L Missense_Mutation p.E1794K 0.26 deleterious(0) probably_damaging(0.955) TCGA-ER-A19N-06 11 4471175 4471175 C T OR52K2 Silent p.I202I 0.29 TCGA-ER-A19N-06 11 4510593 4510593 G A OR52K1 Missense_Mutation p.V155M 0.08 tolerated(0.12) possibly_damaging(0.571) TCGA-ER-A19N-06 11 45672376 45672376 G A CHST1 Missense_Mutation p.T33I 0.17 tolerated(0.55) benign(0) TCGA-ER-A19N-06 11 45882453 45882453 C T CRY2 Silent p.A195A 0.14 TCGA-ER-A19N-06 11 47356606 47356606 C T MYBPC3 Silent p.V964V 0.40 TCGA-ER-A19N-06 11 47754103 47754103 G A FNBP4 Silent p.S602S 0.15 TCGA-ER-A19N-06 11 48267519 48267519 G A OR4X2 Silent p.K288K 0.13 TCGA-ER-A19N-06 11 48285724 48285724 C T OR4X1 Silent p.F104F 0.21 TCGA-ER-A19N-06 11 49175969 49175969 C T FOLH1 Missense_Mutation p.D567N 0.15 deleterious(0.02) probably_damaging(1) TCGA-ER-A19N-06 11 5080058 5080058 C T OR52E2 Missense_Mutation p.R267Q 0.12 tolerated(0.36) benign(0.03) TCGA-ER-A19N-06 11 5221720 5221720 A C OR51V1 Missense_Mutation p.F71V 0.16 deleterious(0) probably_damaging(0.911) TCGA-ER-A19N-06 11 55371162 55371162 C T OR4C11 Missense_Mutation p.G230R 0.55 deleterious(0) probably_damaging(0.98) TCGA-ER-A19N-06 11 5537225 5537225 G A UBQLNL Silent p.A149A 0.31 TCGA-ER-A19N-06 11 559007 559007 C T C11orf35 Intron 0.25 TCGA-ER-A19N-06 11 56468589 56468589 C T OR9G1 Silent p.S242S 0.09 TCGA-ER-A19N-06 11 57958049 57958049 C T OR9Q2 Silent p.L29L 0.23 TCGA-ER-A19N-06 11 5878637 5878637 G A OR52E8 Missense_Mutation p.S99F 0.09 tolerated(0.07) benign(0.265) TCGA-ER-A19N-06 11 61111709 61111709 G A DAK Missense_Mutation p.G402S 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A19N-06 11 61111710 61111710 G A DAK Missense_Mutation p.G402D 0.29 deleterious(0) probably_damaging(0.998) TCGA-ER-A19N-06 11 62294950 62294950 G A AHNAK Silent p.S2313S 0.15 TCGA-ER-A19N-06 11 64055268 64055268 C A GPR137 Silent p.S219S 0.32 TCGA-ER-A19N-06 11 64055269 64055269 C T GPR137 Missense_Mutation p.H220Y 0.34 tolerated(0.06) benign(0.028) TCGA-ER-A19N-06 11 6452878 6452878 G A HPX Silent p.I374I 0.08 TCGA-ER-A19N-06 11 65056524 65056524 G A POLA2 Missense_Mutation p.G379S 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 11 65267752 65267752 C T MALAT1 RNA 0.22 TCGA-ER-A19N-06 11 66138781 66138781 C T SLC29A2 Silent p.G15G 0.34 TCGA-ER-A19N-06 11 66138782 66138782 C T SLC29A2 Missense_Mutation p.G15E 0.34 tolerated(0.07) probably_damaging(0.98) TCGA-ER-A19N-06 11 76831942 76831942 C T CAPN5 Missense_Mutation p.P492S 0.30 tolerated(0.3) possibly_damaging(0.904) TCGA-ER-A19N-06 11 76910694 76910694 G A MYO7A Silent p.R1561R 0.38 TCGA-ER-A19N-06 11 7981739 7981739 G A NLRP10 Missense_Mutation p.H474Y 0.20 tolerated(0.72) benign(0.001) TCGA-ER-A19N-06 11 8132663 8132663 G A RIC3 Missense_Mutation p.P231L 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 11 82641290 82641290 G A C11orf82 Missense_Mutation p.G123R 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 11 82641291 82641291 G A C11orf82 Missense_Mutation p.G123E 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 11 95712321 95712321 G A MAML2 Missense_Mutation p.P1088S 0.13 unknown(0) TCGA-ER-A19N-06 12 101560291 101560291 G A SLC5A8 Nonsense_Mutation p.Q503* 0.15 TCGA-ER-A19N-06 12 110788103 110788103 T G ATP2A2 3'Flank 0.16 TCGA-ER-A19N-06 12 113704081 113704081 G A TPCN1 Missense_Mutation p.E184K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19N-06 12 11420926 11420926 C T PRB3 Missense_Mutation p.G86E 0.14 deleterious(0) unknown(0) TCGA-ER-A19N-06 12 120196499 120196499 G A CIT Silent p.I809I 0.16 TCGA-ER-A19N-06 12 121706444 121706444 G A CAMKK2 Missense_Mutation p.P208S 0.15 tolerated(0.31) benign(0.057) TCGA-ER-A19N-06 12 122745861 122745861 G A VPS33A Missense_Mutation p.L144F 0.16 tolerated(0.32) benign(0.174) TCGA-ER-A19N-06 12 130832683 130832683 G A PIWIL1 Missense_Mutation p.R230Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A19N-06 12 132490707 132490707 A T EP400 Missense_Mutation p.I996F 0.17 unknown(0) TCGA-ER-A19N-06 12 132490709 132490709 C T EP400 Silent p.I996I 0.16 TCGA-ER-A19N-06 12 14774139 14774139 G A GUCY2C Silent p.I871I 0.19 TCGA-ER-A19N-06 12 14827622 14827622 C T GUCY2C Missense_Mutation p.E341K 0.19 tolerated(0.75) benign(0.008) TCGA-ER-A19N-06 12 21918713 21918713 C T KCNJ8 Missense_Mutation p.V407I 0.15 tolerated_low_confidence(0.23) benign(0.018) TCGA-ER-A19N-06 12 2973634 2973634 C T FOXM1 Missense_Mutation p.R373Q 0.14 deleterious(0) probably_damaging(0.95) TCGA-ER-A19N-06 12 41587940 41587940 G A PDZRN4 Missense_Mutation p.G265R 0.16 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 12 4854792 4854792 A G GALNT8 Missense_Mutation p.K353R 0.16 tolerated(0.88) benign(0.022) TCGA-ER-A19N-06 12 50344590 50344590 G A AQP2 5'UTR 0.17 TCGA-ER-A19N-06 12 51074452 51074452 C T DIP2B Intron 0.13 TCGA-ER-A19N-06 12 52825840 52825840 C T KRT75 Missense_Mutation p.E242K 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 12 52885395 52885395 C T KRT6A Silent p.R222R 0.12 TCGA-ER-A19N-06 12 53073598 53073598 G A KRT1 Nonsense_Mutation p.R179* 0.15 TCGA-ER-A19N-06 12 53189772 53189772 G A KRT3 Missense_Mutation p.R19C 0.18 tolerated(0.49) unknown(0) TCGA-ER-A19N-06 12 57110778 57110778 G A NACA Intron 0.20 TCGA-ER-A19N-06 12 57396833 57396833 G A ZBTB39 Silent p.H623H 0.31 TCGA-ER-A19N-06 12 57398536 57398536 G A ZBTB39 Nonsense_Mutation p.Q56* 0.30 TCGA-ER-A19N-06 12 5915235 5915235 C T ANO2 Missense_Mutation p.D321N 0.18 tolerated(0.12) possibly_damaging(0.894) TCGA-ER-A19N-06 12 70049129 70049129 G A BEST3 Missense_Mutation p.S522F 0.15 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-ER-A19N-06 12 7585176 7585176 G A CD163L1 Missense_Mutation p.S201F 0.13 deleterious(0) benign(0.225) TCGA-ER-A19N-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.20 TCGA-ER-A19N-06 12 7640053 7640053 T G CD163 Missense_Mutation p.H651P 0.23 deleterious(0) probably_damaging(0.957) TCGA-ER-A19N-06 12 7864234 7864234 C T DPPA3 Missense_Mutation p.S23F 0.13 tolerated(0.11) benign(0.003) TCGA-ER-A19N-06 12 80672845 80672845 C T OTOGL Missense_Mutation p.P934S 0.11 deleterious(0) probably_damaging(0.997) TCGA-ER-A19N-06 12 80704456 80704456 G A OTOGL Silent p.K1124K 0.13 TCGA-ER-A19N-06 12 85546093 85546093 C T LRRIQ1 Silent p.S1455S 0.20 TCGA-ER-A19N-06 12 85546805 85546805 C T LRRIQ1 Missense_Mutation p.P1475S 0.13 tolerated(1) benign(0.003) TCGA-ER-A19N-06 12 9225293 9225293 C T A2M Missense_Mutation p.E1311K 0.22 tolerated(0.17) benign(0.001) TCGA-ER-A19N-06 12 96384290 96384290 G A HAL Missense_Mutation p.P246S 0.14 deleterious(0) probably_damaging(0.998) TCGA-ER-A19N-06 13 110850885 110850885 C T COL4A1 Missense_Mutation p.G405E 0.23 unknown(0) TCGA-ER-A19N-06 13 111546482 111546482 G A ANKRD10 Intron 0.14 TCGA-ER-A19N-06 13 111926203 111926203 C T ARHGEF7 Silent p.S393S 0.27 TCGA-ER-A19N-06 13 111926204 111926204 C T ARHGEF7 Missense_Mutation p.P394S 0.26 deleterious(0.05) probably_damaging(0.954) TCGA-ER-A19N-06 13 112722044 112722044 C T SOX1 Silent p.G24G 0.40 TCGA-ER-A19N-06 13 113772926 113772926 C T F7 Silent p.F335F 0.32 TCGA-ER-A19N-06 13 32527072 32527072 C T EEF1DP3 RNA 0.14 TCGA-ER-A19N-06 13 32749762 32749762 C T FRY Missense_Mutation p.S805L 0.30 tolerated(0.06) benign(0.038) TCGA-ER-A19N-06 13 33270999 33270999 C T PDS5B Silent p.A520A 0.23 TCGA-ER-A19N-06 13 36700265 36700265 C A DCLK1 Missense_Mutation p.G4C 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A19N-06 13 42293798 42293798 T G VWA8 Silent p.I1015I 0.27 TCGA-ER-A19N-06 13 48830397 48830397 C T ITM2B Missense_Mutation p.L111F 0.26 tolerated(0.69) benign(0.001) TCGA-ER-A19N-06 13 76100681 76100681 A T COMMD6 3'UTR 0.16 TCGA-ER-A19N-06 13 92346025 92346025 G A GPC5 Missense_Mutation p.D304N 0.15 tolerated(1) benign(0.008) TCGA-ER-A19N-06 13 97639586 97639586 G A OXGR1 Missense_Mutation p.S143F 0.26 tolerated(0.72) benign(0.008) TCGA-ER-A19N-06 14 100405642 100405642 C T EML1 Missense_Mutation p.S786L 0.18 tolerated(0.05) benign(0.007) TCGA-ER-A19N-06 14 104208524 104208524 C T PPP1R13B Silent p.S475S 0.16 TCGA-ER-A19N-06 14 106091525 106091525 G A IGHG4 Silent p.F123F 0.18 TCGA-ER-A19N-06 14 106691865 106691865 C T IGHV3-21 Missense_Mutation p.M53I 0.19 deleterious_low_confidence(0.03) benign(0.062) TCGA-ER-A19N-06 14 107078632 107078632 T A IGHV1-58 Missense_Mutation p.K31M 0.16 possibly_damaging(0.889) TCGA-ER-A19N-06 14 20404056 20404056 C T OR4K1 Silent p.A77A 0.11 TCGA-ER-A19N-06 14 20528840 20528840 C T OR4L1 Missense_Mutation p.L213F 0.09 tolerated(0.06) benign(0.17) TCGA-ER-A19N-06 14 20711150 20711150 C T OR11H4 Missense_Mutation p.T67I 0.08 deleterious(0.04) benign(0.05) TCGA-ER-A19N-06 14 22102951 22102951 G A OR10G2 Silent p.F16F 0.13 TCGA-ER-A19N-06 14 38678861 38678861 G A SSTR1 Missense_Mutation p.M89I 0.16 deleterious(0.05) possibly_damaging(0.708) TCGA-ER-A19N-06 14 63784486 63784486 G A GPHB5 RNA 0.23 TCGA-ER-A19N-06 14 75323691 75323691 C T PROX2 Missense_Mutation p.R247H 0.18 deleterious(0) probably_damaging(0.937) TCGA-ER-A19N-06 14 86087829 86087829 C T FLRT2 5'UTR 0.18 TCGA-ER-A19N-06 14 96706849 96706849 C T BDKRB2 Missense_Mutation p.P62S 0.15 tolerated(0.38) possibly_damaging(0.726) TCGA-ER-A19N-06 14 96706850 96706850 C T BDKRB2 Missense_Mutation p.P62L 0.15 tolerated(0.11) benign(0.275) TCGA-ER-A19N-06 15 24924064 24924064 G A NPAP1 Missense_Mutation p.G1017D 0.12 deleterious_low_confidence(0) possibly_damaging(0.661) TCGA-ER-A19N-06 15 25420017 25420017 G A SNORD115-3 5'Flank 0.22 TCGA-ER-A19N-06 15 28474839 28474839 C T HERC2 Missense_Mutation p.R1655K 0.14 benign(0.027) TCGA-ER-A19N-06 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.21 TCGA-ER-A19N-06 15 48703468 48703468 C T FBN1 Missense_Mutation p.E2779K 0.18 benign(0.004) TCGA-ER-A19N-06 15 49423006 49423006 G A COPS2 Nonsense_Mutation p.Q326* 0.17 TCGA-ER-A19N-06 15 51749620 51749620 G A DMXL2 Nonsense_Mutation p.Q2727* 0.20 TCGA-ER-A19N-06 15 52849387 52849387 T C ARPP19 Silent p.K26K 0.19 TCGA-ER-A19N-06 15 54590052 54590052 G A UNC13C Silent p.L1344L 0.19 TCGA-ER-A19N-06 15 57924750 57924750 C T GCOM1 Missense_Mutation p.A266V 0.16 tolerated(0.26) benign(0.017) TCGA-ER-A19N-06 15 59523972 59523972 G A MYO1E Silent p.L147L 0.13 TCGA-ER-A19N-06 15 65739137 65739137 G A DPP8 3'UTR 0.26 TCGA-ER-A19N-06 15 74487809 74487809 C T STRA6 Missense_Mutation p.G183E 0.18 tolerated(1) benign(0.045) TCGA-ER-A19N-06 15 76430111 76430111 C T C15orf27 Silent p.T34T 0.19 TCGA-ER-A19N-06 15 81187419 81187419 G A KIAA1199 Missense_Mutation p.R392K 0.09 tolerated_low_confidence(0.28) benign(0.003) TCGA-ER-A19N-06 15 89386843 89386843 G A ACAN Missense_Mutation p.D339N 0.18 tolerated(0.34) unknown(0) TCGA-ER-A19N-06 15 90281443 90281443 G A WDR93 Missense_Mutation p.R646K 0.18 tolerated(0.06) benign(0.199) TCGA-ER-A19N-06 15 93547964 93547964 C A CHD2 Missense_Mutation p.Q1466K 0.19 tolerated(0.43) possibly_damaging(0.824) TCGA-ER-A19N-06 16 1552363 1552363 C T TELO2 Silent p.A537A 0.37 TCGA-ER-A19N-06 16 2105449 2105449 C T TSC2 Silent p.F176F 0.27 TCGA-ER-A19N-06 16 2105450 2105450 C T TSC2 Missense_Mutation p.L177F 0.27 deleterious(0) probably_damaging(0.974) TCGA-ER-A19N-06 16 23652826 23652826 C T DCTN5 5'UTR 0.36 TCGA-ER-A19N-06 16 24567190 24567190 C T RBBP6 Silent p.F162F 0.28 TCGA-ER-A19N-06 16 26147314 26147314 G A HS3ST4 Silent p.Q372Q 0.12 TCGA-ER-A19N-06 16 28603323 28603323 C T SULT1A2 3'UTR 0.12 TCGA-ER-A19N-06 16 2882097 2882097 G A ZG16B Silent p.E188E 0.11 TCGA-ER-A19N-06 16 28845421 28845421 C T ATXN2L Silent p.P687P 0.12 TCGA-ER-A19N-06 16 31373954 31373954 C T ITGAX Silent p.L413L 0.33 TCGA-ER-A19N-06 16 3255040 3255040 C T OR1F1 Missense_Mutation p.S265F 0.36 deleterious(0.04) benign(0.098) TCGA-ER-A19N-06 16 5041926 5041926 G A SEC14L5 Missense_Mutation p.E188K 0.43 tolerated(0.31) benign(0.118) TCGA-ER-A19N-06 16 50707306 50707306 C T SNX20 3'UTR 0.31 TCGA-ER-A19N-06 16 50707307 50707307 C T SNX20 3'UTR 0.31 TCGA-ER-A19N-06 16 70599046 70599046 C T SF3B3 Missense_Mutation p.P848S 0.21 tolerated(0.12) benign(0.046) TCGA-ER-A19N-06 16 81222604 81222604 C T PKD1L2 Splice_Site p.X85_splice 0.25 TCGA-ER-A19N-06 16 81303860 81303860 G A BCMO1 Missense_Mutation p.E314K 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A19N-06 16 89603247 89603247 C T SPG7 Intron 0.24 TCGA-ER-A19N-06 17 10293741 10293741 C T MYH8 3'UTR 0.11 TCGA-ER-A19N-06 17 10293783 10293783 G A MYH8 Silent p.I1934I 0.14 TCGA-ER-A19N-06 17 10430078 10430078 G A MYH2 Missense_Mutation p.S1342F 0.14 deleterious(0) benign(0.151) TCGA-ER-A19N-06 17 12860020 12860020 C T ARHGAP44 Silent p.I433I 0.15 TCGA-ER-A19N-06 17 17896134 17896134 C T LRRC48 Missense_Mutation p.P167L 0.26 deleterious(0) possibly_damaging(0.624) TCGA-ER-A19N-06 17 19575037 19575037 C T ALDH3A2 Missense_Mutation p.S404F 0.18 tolerated(0.08) benign(0.056) TCGA-ER-A19N-06 17 38568043 38568043 T C TOP2A Missense_Mutation p.M273V 0.22 deleterious(0) benign(0.027) TCGA-ER-A19N-06 17 39150346 39150346 C T KRTAP3-3 Missense_Mutation p.D2N 0.09 tolerated_low_confidence(0.13) benign(0.12) TCGA-ER-A19N-06 17 39580189 39580189 C T KRT37 Intron 0.17 TCGA-ER-A19N-06 17 40478182 40478182 G A STAT3 Silent p.I439I 0.14 TCGA-ER-A19N-06 17 42337236 42337236 G A SLC4A1 Missense_Mutation p.P184S 0.27 tolerated(0.28) benign(0.017) TCGA-ER-A19N-06 17 42429158 42429158 C T GRN Missense_Mutation p.P392S 0.22 tolerated(0.08) possibly_damaging(0.633) TCGA-ER-A19N-06 17 42429159 42429159 C T GRN Missense_Mutation p.P392L 0.22 tolerated(0.05) benign(0.248) TCGA-ER-A19N-06 17 43910564 43910564 C T CRHR1 Silent p.I306I 0.16 TCGA-ER-A19N-06 17 43911143 43911143 C T CRHR1 Silent p.F360F 0.09 TCGA-ER-A19N-06 17 440327 440327 G A VPS53 Silent p.I652I 0.09 TCGA-ER-A19N-06 17 46196339 46196339 C T SNX11 Silent p.V110V 0.15 TCGA-ER-A19N-06 17 48051150 48051150 G A DLX4 Missense_Mutation p.G189E 0.22 tolerated(0.08) benign(0.36) TCGA-ER-A19N-06 17 48704219 48704219 G A CACNA1G 3'UTR 0.23 TCGA-ER-A19N-06 17 60814083 60814083 C T MARCH10 Silent p.R382R 0.13 TCGA-ER-A19N-06 17 61607752 61607752 A T KCNH6 Missense_Mutation p.Y175F 0.12 tolerated(0.05) benign(0.402) TCGA-ER-A19N-06 17 61950618 61950618 G A CSH2 Missense_Mutation p.P31L 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 17 61950619 61950619 G A CSH2 Missense_Mutation p.P31S 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-ER-A19N-06 17 62796421 62796421 G A PLEKHM1P RNA 0.38 TCGA-ER-A19N-06 17 62796422 62796422 G A PLEKHM1P RNA 0.26 TCGA-ER-A19N-06 17 63157006 63157006 G A RGS9 Silent p.G134G 0.12 TCGA-ER-A19N-06 17 67190038 67190038 G A ABCA10 Nonsense_Mutation p.Q480* 0.10 TCGA-ER-A19N-06 17 67298924 67298924 G A ABCA5 Missense_Mutation p.P352S 0.09 deleterious(0.03) probably_damaging(1) TCGA-ER-A19N-06 17 71364628 71364628 G A SDK2 Silent p.A1695A 0.23 TCGA-ER-A19N-06 17 7186857 7186857 C T SLC2A4 Silent p.I72I 0.17 TCGA-ER-A19N-06 17 72473669 72473669 G A CD300A Missense_Mutation p.A210T 0.32 deleterious(0.01) possibly_damaging(0.474) TCGA-ER-A19N-06 17 72477440 72477440 C T CD300A Missense_Mutation p.S214L 0.15 deleterious(0.05) benign(0.008) TCGA-ER-A19N-06 17 72608888 72608888 G A CD300E Silent p.F174F 0.10 TCGA-ER-A19N-06 17 7365192 7365192 G A ZBTB4 3'UTR 0.21 TCGA-ER-A19N-06 17 74068551 74068551 G A SRP68 Missense_Mutation p.P8S 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ER-A19N-06 17 76354938 76354938 A G SOCS3 Missense_Mutation p.F80S 0.09 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 17 76800017 76800017 G A USP36 Missense_Mutation p.P754S 0.38 tolerated(0.23) benign(0.093) TCGA-ER-A19N-06 17 7720620 7720620 G A DNAH2 Missense_Mutation p.D3303N 0.16 benign(0.007) TCGA-ER-A19N-06 17 77708919 77708919 A G ENPP7 Silent p.K159K 0.12 TCGA-ER-A19N-06 17 78188089 78188089 C T SGSH Missense_Mutation p.R182H 0.12 deleterious(0) probably_damaging(0.996) TCGA-ER-A19N-06 17 7843499 7843499 G A CNTROB Missense_Mutation p.G417E 0.14 tolerated(0.34) probably_damaging(0.957) TCGA-ER-A19N-06 17 7984106 7984106 G A ALOX12B Intron 0.20 TCGA-ER-A19N-06 17 8273656 8273656 G A KRBA2 Missense_Mutation p.P92L 0.14 tolerated(0.38) benign(0.002) TCGA-ER-A19N-06 17 8273657 8273657 G A KRBA2 Missense_Mutation p.P92S 0.13 tolerated(1) benign(0.001) TCGA-ER-A19N-06 18 13884611 13884611 G A MC2R 3'UTR 0.18 TCGA-ER-A19N-06 18 28898230 28898230 C T DSG1 5'UTR 0.13 TCGA-ER-A19N-06 18 29040811 29040811 C T DSG3 Missense_Mutation p.R234C 0.13 tolerated(0.12) probably_damaging(0.912) TCGA-ER-A19N-06 18 29850274 29850274 G A GAREM Missense_Mutation p.P547S 0.19 tolerated(0.19) probably_damaging(1) TCGA-ER-A19N-06 18 52265162 52265162 G A DYNAP Missense_Mutation p.G140E 0.23 tolerated(0.14) probably_damaging(0.988) TCGA-ER-A19N-06 18 56202291 56202291 C T ALPK2 Missense_Mutation p.E1710K 0.12 deleterious(0.03) benign(0.063) TCGA-ER-A19N-06 18 56203815 56203815 C T ALPK2 Missense_Mutation p.E1202K 0.21 tolerated(0.17) benign(0.015) TCGA-ER-A19N-06 18 5956313 5956313 G A L3MBTL4 Missense_Mutation p.P593L 0.23 deleterious(0) possibly_damaging(0.842) TCGA-ER-A19N-06 18 61383338 61383338 G A SERPINB11 Missense_Mutation p.E143K 0.09 deleterious(0) probably_damaging(0.993) TCGA-ER-A19N-06 18 65178797 65178797 G A DSEL Nonsense_Mutation p.Q1027* 0.17 TCGA-ER-A19N-06 18 67836153 67836153 T A RTTN Missense_Mutation p.T543S 0.18 tolerated(0.16) benign(0.041) TCGA-ER-A19N-06 18 71815891 71815891 C T TIMM21 5'UTR 0.24 TCGA-ER-A19N-06 19 10124157 10124157 C T RDH8 Missense_Mutation p.S15F 0.16 deleterious_low_confidence(0.01) benign(0.023) TCGA-ER-A19N-06 19 1090091 1090091 G A POLR2E Silent p.A161A 0.15 TCGA-ER-A19N-06 19 12059187 12059187 G A ZNF700 Silent p.E116E 0.14 TCGA-ER-A19N-06 19 15905071 15905071 C T OR10H5 Silent p.I71I 0.18 TCGA-ER-A19N-06 19 19680375 19680375 G A PBX4 Silent p.F217F 0.19 TCGA-ER-A19N-06 19 34263988 34263988 G A CHST8 3'UTR 0.22 TCGA-ER-A19N-06 19 36036592 36036592 G A TMEM147 5'UTR 0.25 TCGA-ER-A19N-06 19 36145521 36145521 C T COX6B1 Missense_Mutation p.S52F 0.18 deleterious(0.03) benign(0.078) TCGA-ER-A19N-06 19 4117551 4117551 A G MAP2K2 Missense_Mutation p.F57L 0.15 tolerated(0.06) probably_damaging(0.928) TCGA-ER-A19N-06 19 4117552 4117552 G A MAP2K2 Silent p.A56A 0.15 TCGA-ER-A19N-06 19 42848898 42848898 C T MEGF8 Silent p.S670S 0.15 TCGA-ER-A19N-06 19 43762387 43762387 C T PSG9 Missense_Mutation p.E404K 0.19 tolerated(0.18) possibly_damaging(0.507) TCGA-ER-A19N-06 19 4529332 4529332 C T PLIN5 Intron 0.21 TCGA-ER-A19N-06 19 45998062 45998062 G A RTN2 Missense_Mutation p.S94L 0.24 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-ER-A19N-06 19 50195618 50195618 C T CPT1C Missense_Mutation p.R37C 0.09 deleterious(0) possibly_damaging(0.863) TCGA-ER-A19N-06 19 51451958 51451958 G A KLK5 Missense_Mutation p.P222S 0.16 deleterious(0.03) benign(0.022) TCGA-ER-A19N-06 19 51729168 51729168 C T CD33 Silent p.I176I 0.22 TCGA-ER-A19N-06 19 52004611 52004611 C T SIGLEC12 Missense_Mutation p.G126E 0.17 deleterious(0) probably_damaging(0.986) TCGA-ER-A19N-06 19 52825755 52825755 C T ZNF480 Nonsense_Mutation p.R418* 0.14 TCGA-ER-A19N-06 19 54387439 54387439 G A PRKCG Missense_Mutation p.R76Q 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 19 54868216 54868216 G A LAIR1 Missense_Mutation p.S156F 0.15 tolerated(0.11) probably_damaging(0.962) TCGA-ER-A19N-06 19 55435095 55435095 G A NLRP7 3'UTR 0.26 TCGA-ER-A19N-06 19 55445094 55445094 G A NLRP7 Missense_Mutation p.R829C 0.19 tolerated(0.05) benign(0.003) TCGA-ER-A19N-06 19 55594893 55594893 C T EPS8L1 Intron 0.29 TCGA-ER-A19N-06 19 56041206 56041206 C T SBK2 Missense_Mutation p.R314K 0.16 tolerated(1) benign(0.002) TCGA-ER-A19N-06 19 57132753 57132753 C T ZNF71 Missense_Mutation p.P33L 0.18 tolerated(0.79) benign(0) TCGA-ER-A19N-06 19 57647025 57647025 T C ZIM3 Missense_Mutation p.N227S 0.18 deleterious(0) benign(0) TCGA-ER-A19N-06 19 58187836 58187836 G A ZSCAN4 Nonsense_Mutation p.W108* 0.12 TCGA-ER-A19N-06 19 58640350 58640350 G A ZNF329 Missense_Mutation p.S174L 0.21 tolerated(0.54) benign(0) TCGA-ER-A19N-06 19 6854016 6854016 C T VAV1 Silent p.D797D 0.14 TCGA-ER-A19N-06 19 7806457 7806457 G A CD209 3'UTR 0.18 TCGA-ER-A19N-06 19 9049612 9049612 G A MUC16 Silent p.S10673S 0.19 TCGA-ER-A19N-06 19 9061972 9061972 C T MUC16 Missense_Mutation p.E8492K 0.19 unknown(0) TCGA-ER-A19N-06 19 9062585 9062585 C T MUC16 Silent p.E8287E 0.18 TCGA-ER-A19N-06 19 9082989 9082989 C A MUC16 Missense_Mutation p.M2942I 0.20 unknown(0) TCGA-ER-A19N-06 19 9801609 9801609 C T ZNF812 Silent p.E190E 0.25 TCGA-ER-A19N-06 19 9801638 9801638 C T ZNF812 Missense_Mutation p.D181N 0.24 tolerated(0.81) probably_damaging(0.999) TCGA-ER-A19N-06 1 10166366 10166366 C T UBE4B Silent p.S307S 0.33 TCGA-ER-A19N-06 1 11008189 11008189 G A C1orf127 Missense_Mutation p.S668F 0.43 tolerated(0.1) probably_damaging(0.954) TCGA-ER-A19N-06 1 11151167 11151167 G A EXOSC10 Missense_Mutation p.P183S 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 1 114372239 114372239 G A PTPN22 Missense_Mutation p.P742L 0.36 deleterious(0) possibly_damaging(0.856) TCGA-ER-A19N-06 1 115256528 115256528 T G NRAS Missense_Mutation p.Q61H 0.29 deleterious(0) possibly_damaging(0.531) TCGA-ER-A19N-06 1 11561165 11561165 G A PTCHD2 Missense_Mutation p.G39E 0.47 tolerated_low_confidence(0.44) benign(0.001) TCGA-ER-A19N-06 1 1168026 1168026 C G B3GALT6 Missense_Mutation p.P123R 0.35 tolerated(0.07) possibly_damaging(0.566) TCGA-ER-A19N-06 1 1168027 1168027 C T B3GALT6 Silent p.P123P 0.36 TCGA-ER-A19N-06 1 118567963 118567963 A C SPAG17 Nonsense_Mutation p.Y1269* 0.33 TCGA-ER-A19N-06 1 11884605 11884605 C T CLCN6 Missense_Mutation p.P215S 0.34 tolerated(1) probably_damaging(0.986) TCGA-ER-A19N-06 1 120336672 120336672 C T REG4 3'UTR 0.31 TCGA-ER-A19N-06 1 12955495 12955495 G A PRAMEF10 Missense_Mutation p.L62F 0.31 tolerated(0.53) benign(0.166) TCGA-ER-A19N-06 1 145561324 145561324 C T ANKRD35 Nonsense_Mutation p.R338* 0.29 TCGA-ER-A19N-06 1 152058153 152058153 C T TCHHL1 Missense_Mutation p.E669K 0.15 tolerated(0.15) benign(0.029) TCGA-ER-A19N-06 1 152058761 152058761 C T TCHHL1 Missense_Mutation p.G466E 0.18 tolerated(0.25) benign(0.2) TCGA-ER-A19N-06 1 153005041 153005041 C T SPRR1B Missense_Mutation p.P74S 0.19 tolerated(0.12) possibly_damaging(0.731) TCGA-ER-A19N-06 1 153362720 153362720 C T S100A8 Splice_Site p.X48_splice 0.17 TCGA-ER-A19N-06 1 155340630 155340630 G A ASH1L Silent p.P2159P 0.24 TCGA-ER-A19N-06 1 155450538 155450538 G A ASH1L Missense_Mutation p.P708L 0.20 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-ER-A19N-06 1 156878777 156878777 G A PEAR1 Missense_Mutation p.E454K 0.14 tolerated(0.8) benign(0.007) TCGA-ER-A19N-06 1 158369215 158369215 G A OR10T2 Silent p.I14I 0.15 TCGA-ER-A19N-06 1 158390110 158390110 G A OR10K2 Missense_Mutation p.P183S 0.14 deleterious(0.01) probably_damaging(1) TCGA-ER-A19N-06 1 159277610 159277610 G A FCER1A Missense_Mutation p.G221E 0.14 deleterious(0.02) probably_damaging(0.915) TCGA-ER-A19N-06 1 159505084 159505084 G A OR10J5 Silent p.A238A 0.12 TCGA-ER-A19N-06 1 159505130 159505130 G A OR10J5 Missense_Mutation p.S223F 0.19 deleterious(0) possibly_damaging(0.477) TCGA-ER-A19N-06 1 159683778 159683778 G A CRP Missense_Mutation p.S71L 0.22 deleterious(0) probably_damaging(0.99) TCGA-ER-A19N-06 1 167852768 167852768 C T ADCY10 Silent p.E309E 0.16 TCGA-ER-A19N-06 1 171085366 171085366 C T FMO3 Missense_Mutation p.S401F 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-ER-A19N-06 1 175052944 175052944 G A TNN Silent p.V369V 0.22 TCGA-ER-A19N-06 1 175097807 175097807 C T TNN Silent p.T1085T 0.22 TCGA-ER-A19N-06 1 176833657 176833657 C T ASTN1 Silent p.R1216R 0.20 TCGA-ER-A19N-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.18 deleterious(0) probably_damaging(0.994) TCGA-ER-A19N-06 1 176984010 176984010 C T ASTN1 Silent p.G480G 0.14 TCGA-ER-A19N-06 1 179497515 179497515 T G AXDND1 Missense_Mutation p.D888E 0.10 deleterious(0.03) possibly_damaging(0.739) TCGA-ER-A19N-06 1 179562978 179562978 G A TDRD5 Missense_Mutation p.E206K 0.17 tolerated(0.16) benign(0.012) TCGA-ER-A19N-06 1 180158704 180158704 C T QSOX1 Silent p.P345P 0.14 TCGA-ER-A19N-06 1 180382602 180382602 C T ACBD6 Missense_Mutation p.E158K 0.29 tolerated(0.17) possibly_damaging(0.471) TCGA-ER-A19N-06 1 180904771 180904771 C T KIAA1614 Silent p.L576L 0.20 TCGA-ER-A19N-06 1 183711306 183711306 C T RGL1 Missense_Mutation p.P5L 0.13 deleterious_low_confidence(0.05) benign(0) TCGA-ER-A19N-06 1 186375273 186375273 C T C1orf27 Silent p.S353S 0.20 TCGA-ER-A19N-06 1 19062399 19062399 C T PAX7 Missense_Mutation p.P477S 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-ER-A19N-06 1 19652757 19652757 C T PQLC2 Missense_Mutation p.S134F 0.33 deleterious(0.02) benign(0.438) TCGA-ER-A19N-06 1 197129067 197129067 G A ZBTB41 Missense_Mutation p.H718Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-ER-A19N-06 1 19992783 19992783 G A HTR6 Silent p.Q179Q 0.35 TCGA-ER-A19N-06 1 203472079 203472079 A G OPTC Missense_Mutation p.N257S 0.16 deleterious(0) probably_damaging(0.984) TCGA-ER-A19N-06 1 204125924 204125924 C T REN Silent p.E233E 0.11 TCGA-ER-A19N-06 1 205156602 205156602 C T DSTYK Missense_Mutation p.D200N 0.24 deleterious(0) probably_damaging(0.98) TCGA-ER-A19N-06 1 205585768 205585768 G A ELK4 Missense_Mutation p.P401L 0.22 deleterious(0) probably_damaging(0.963) TCGA-ER-A19N-06 1 206666707 206666707 C T IKBKE Missense_Mutation p.L681F 0.16 tolerated(0.23) benign(0.006) TCGA-ER-A19N-06 1 209789916 209789916 C T LAMB3 Silent p.Q1094Q 0.14 TCGA-ER-A19N-06 1 209799263 209799263 C T LAMB3 Missense_Mutation p.R569Q 0.18 deleterious(0.02) probably_damaging(1) TCGA-ER-A19N-06 1 210415599 210415599 G A SERTAD4 Missense_Mutation p.E330K 0.12 deleterious(0.02) possibly_damaging(0.629) TCGA-ER-A19N-06 1 210857365 210857365 C T KCNH1 Missense_Mutation p.R743K 0.17 tolerated(0.51) benign(0.012) TCGA-ER-A19N-06 1 213403858 213403858 A G RPS6KC1 Missense_Mutation p.T355A 0.14 tolerated(0.05) benign(0.141) TCGA-ER-A19N-06 1 228491568 228491568 C T OBSCN Missense_Mutation p.A4644V 0.24 possibly_damaging(0.521) TCGA-ER-A19N-06 1 231349598 231349598 G C TRIM67 Missense_Mutation p.V721L 0.12 tolerated(0.12) benign(0.092) TCGA-ER-A19N-06 1 233150453 233150453 C T PCNXL2 Missense_Mutation p.G1637E 0.15 deleterious(0) probably_damaging(0.959) TCGA-ER-A19N-06 1 235715522 235715522 C T GNG4 Missense_Mutation p.A39T 0.13 tolerated(0.06) probably_damaging(0.938) TCGA-ER-A19N-06 1 240969442 240969442 G A RGS7 Nonsense_Mutation p.Q423* 0.19 TCGA-ER-A19N-06 1 26392905 26392905 C G TRIM63 Silent p.R62R 0.10 TCGA-ER-A19N-06 1 34006189 34006189 G A CSMD2 Silent p.S3045S 0.34 TCGA-ER-A19N-06 1 38227462 38227462 G A EPHA10 Silent p.I155I 0.43 TCGA-ER-A19N-06 1 40036935 40036935 C A PABPC4 Missense_Mutation p.M158I 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-ER-A19N-06 1 42045927 42045927 G A HIVEP3 Silent p.P1514P 0.40 TCGA-ER-A19N-06 1 57538063 57538063 G A DAB1 Missense_Mutation p.H111Y 0.17 tolerated(0.09) possibly_damaging(0.453) TCGA-ER-A19N-06 1 5923984 5923984 G C NPHP4 Missense_Mutation p.P1369R 0.09 deleterious(0) probably_damaging(0.994) TCGA-ER-A19N-06 1 62713245 62713245 C T KANK4 Missense_Mutation p.D928N 0.31 tolerated(0.26) benign(0.04) TCGA-ER-A19N-06 1 6528321 6528321 G A PLEKHG5 Missense_Mutation p.R938C 0.42 deleterious_low_confidence(0.02) benign(0.01) TCGA-ER-A19N-06 1 67450578 67450578 G A MIER1 Missense_Mutation p.D565N 0.34 deleterious_low_confidence(0) benign(0.009) TCGA-ER-A19N-06 1 75078372 75078372 G A C1orf173 Silent p.S374S 0.24 TCGA-ER-A19N-06 20 1552525 1552525 C T SIRPB1 Missense_Mutation p.D198N 0.15 tolerated(0.23) benign(0.125) TCGA-ER-A19N-06 20 19981530 19981530 C T RIN2 Missense_Mutation p.P929S 0.12 tolerated(0.06) benign(0.024) TCGA-ER-A19N-06 20 23334889 23334889 C T NXT1 Nonsense_Mutation p.Q71* 0.21 TCGA-ER-A19N-06 20 25274902 25274902 C T PYGB Silent p.I762I 0.19 TCGA-ER-A19N-06 20 30053465 30053465 C T DEFB124 Silent p.G20G 0.12 TCGA-ER-A19N-06 20 34285603 34285603 A C NFS1 Intron 0.21 TCGA-ER-A19N-06 20 4162476 4162476 C T SMOX Silent p.F154F 0.13 TCGA-ER-A19N-06 20 43385568 43385568 G A RIMS4 Missense_Mutation p.P189S 0.13 tolerated_low_confidence(0.22) benign(0.005) TCGA-ER-A19N-06 20 43532690 43532690 C T YWHAB Silent p.F119F 0.16 TCGA-ER-A19N-06 20 44184421 44184421 G A WFDC8 Missense_Mutation p.P122S 0.13 tolerated(0.26) benign(0.063) TCGA-ER-A19N-06 20 44486277 44486277 C T ZSWIM3 5'UTR 0.33 TCGA-ER-A19N-06 20 44515165 44515165 G A SPATA25 Silent p.S225S 0.13 TCGA-ER-A19N-06 20 44515166 44515166 G A SPATA25 Missense_Mutation p.S225F 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.884) TCGA-ER-A19N-06 20 45630110 45630110 C T EYA2 Silent p.S51S 0.11 TCGA-ER-A19N-06 20 57766525 57766525 C T ZNF831 Missense_Mutation p.R151C 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 20 61542525 61542525 T C DIDO1 Missense_Mutation p.D147G 0.09 benign(0.002) TCGA-ER-A19N-06 20 61937359 61937359 C T COL20A1 Missense_Mutation p.A155V 0.16 tolerated(0.09) benign(0.293) TCGA-ER-A19N-06 20 62292792 62292792 C T RTEL1 Missense_Mutation p.P82S 0.19 tolerated(0.65) benign(0.013) TCGA-ER-A19N-06 20 62366915 62366915 C T ZGPAT Missense_Mutation p.R486W 0.30 deleterious(0) probably_damaging(0.995) TCGA-ER-A19N-06 20 8705394 8705394 C T PLCB1 Missense_Mutation p.S558L 0.12 deleterious(0) possibly_damaging(0.573) TCGA-ER-A19N-06 21 39087105 39087105 C T KCNJ6 Missense_Mutation p.G119R 0.23 deleterious(0) probably_damaging(0.998) TCGA-ER-A19N-06 21 40880956 40880956 T G SH3BGR Splice_Site p.X208_splice 0.11 TCGA-ER-A19N-06 21 43800297 43800297 G A TMPRSS3 Missense_Mutation p.P326L 0.27 deleterious(0) probably_damaging(0.969) TCGA-ER-A19N-06 21 44949686 44949686 G A HSF2BP Missense_Mutation p.T318I 0.18 tolerated(0.22) benign(0.047) TCGA-ER-A19N-06 21 45656915 45656915 G A ICOSLG Missense_Mutation p.R81W 0.09 tolerated(0.09) benign(0.234) TCGA-ER-A19N-06 21 46902721 46902721 G C COL18A1 Missense_Mutation p.A743P 0.11 possibly_damaging(0.894) TCGA-ER-A19N-06 22 19808831 19808831 G A GNB1L Silent p.L16L 0.31 TCGA-ER-A19N-06 22 21984312 21984312 G A YDJC 5'UTR 0.33 TCGA-ER-A19N-06 22 24837156 24837156 C T ADORA2A Missense_Mutation p.P313L 0.29 tolerated(0.33) benign(0) TCGA-ER-A19N-06 22 37770744 37770744 G A ELFN2 Silent p.P277P 0.33 TCGA-ER-A19N-06 2 107041315 107041315 G A RGPD3 Silent p.I1036I 0.15 TCGA-ER-A19N-06 2 113788703 113788703 G A IL36B Missense_Mutation p.R15C 0.32 tolerated_low_confidence(0.06) benign(0.221) TCGA-ER-A19N-06 2 113820196 113820196 C T IL36RN Missense_Mutation p.P137L 0.18 tolerated(0.07) possibly_damaging(0.644) TCGA-ER-A19N-06 2 128477301 128477301 C T WDR33 Silent p.G766G 0.12 TCGA-ER-A19N-06 2 136590681 136590681 C T LCT Silent p.Q240Q 0.14 TCGA-ER-A19N-06 2 152404848 152404848 G A NEB Missense_Mutation p.R6711W 0.18 probably_damaging(0.995) TCGA-ER-A19N-06 2 169869860 169869860 C T ABCB11 Missense_Mutation p.G104E 0.27 tolerated(0.07) benign(0.02) TCGA-ER-A19N-06 2 171323057 171323057 G A MYO3B Silent p.Q950Q 0.24 TCGA-ER-A19N-06 2 173882230 173882230 A C RAPGEF4 Missense_Mutation p.E669A 0.39 tolerated(0.14) possibly_damaging(0.497) TCGA-ER-A19N-06 2 17692134 17692134 C T RAD51AP2 Silent p.R1139R 0.15 TCGA-ER-A19N-06 2 179412371 179412371 G A TTN Silent p.L31328L 0.12 TCGA-ER-A19N-06 2 179442498 179442498 C T TTN Silent p.S22885S 0.12 TCGA-ER-A19N-06 2 179460364 179460364 G A TTN Silent p.T19239T 0.31 TCGA-ER-A19N-06 2 179473425 179473425 C T TTN Missense_Mutation p.G17438E 0.21 TCGA-ER-A19N-06 2 179558399 179558399 C T TTN Missense_Mutation p.E10511K 0.15 TCGA-ER-A19N-06 2 179640518 179640518 C T TTN Missense_Mutation p.E2025K 0.35 TCGA-ER-A19N-06 2 196709789 196709789 C T DNAH7 Missense_Mutation p.R2961Q 0.21 tolerated(0.06) possibly_damaging(0.864) TCGA-ER-A19N-06 2 196722214 196722214 G A DNAH7 Silent p.I2767I 0.28 TCGA-ER-A19N-06 2 204305977 204305977 G C RAPH1 Missense_Mutation p.P646A 0.19 benign(0.032) TCGA-ER-A19N-06 2 206659641 206659641 C T NRP2 Silent p.G885G 0.23 TCGA-ER-A19N-06 2 207170939 207170939 C T ZDBF2 Missense_Mutation p.R563W 0.10 tolerated(0.34) probably_damaging(0.919) TCGA-ER-A19N-06 2 209358265 209358265 G A PTH2R Missense_Mutation p.E512K 0.13 tolerated(0.21) possibly_damaging(0.619) TCGA-ER-A19N-06 2 211168327 211168327 C T MYL1 Intron 0.38 TCGA-ER-A19N-06 2 21245739 21245739 G A APOB Missense_Mutation p.P927L 0.14 possibly_damaging(0.656) TCGA-ER-A19N-06 2 216263996 216263996 G A FN1 Missense_Mutation p.P1111L 0.26 deleterious(0.01) probably_damaging(1) TCGA-ER-A19N-06 2 219558012 219558012 G A STK36 Missense_Mutation p.R698K 0.12 tolerated(0.22) benign(0.17) TCGA-ER-A19N-06 2 219558013 219558013 G A STK36 Silent p.R698R 0.12 TCGA-ER-A19N-06 2 225666704 225666704 A G DOCK10 Missense_Mutation p.L1441S 0.29 deleterious(0) possibly_damaging(0.517) TCGA-ER-A19N-06 2 227876991 227876991 C T COL4A4 Silent p.L1413L 0.12 TCGA-ER-A19N-06 2 228882461 228882461 G T SPHKAP Missense_Mutation p.L1037I 0.15 tolerated(1) benign(0.002) TCGA-ER-A19N-06 2 231222635 231222635 C T SP140L Missense_Mutation p.L75F 0.13 tolerated(0.23) probably_damaging(0.964) TCGA-ER-A19N-06 2 234386139 234386139 G A USP40 Missense_Mutation p.L1215F 0.21 tolerated(0.61) possibly_damaging(0.543) TCGA-ER-A19N-06 2 234386140 234386140 G A USP40 Silent p.A1214A 0.18 TCGA-ER-A19N-06 2 238249361 238249361 G A COL6A3 Missense_Mutation p.P2733L 0.35 unknown(0) TCGA-ER-A19N-06 2 242545819 242545819 G A THAP4 Missense_Mutation p.P437L 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 2 38977248 38977248 A G SRSF7 Silent p.T39T 0.30 TCGA-ER-A19N-06 2 42578352 42578352 G A COX7A2L 3'UTR 0.24 TCGA-ER-A19N-06 2 67631561 67631561 C T ETAA1 Missense_Mutation p.P583S 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-ER-A19N-06 2 67631562 67631562 C T ETAA1 Missense_Mutation p.P583L 0.15 deleterious(0.02) benign(0.323) TCGA-ER-A19N-06 2 73868781 73868781 C T NAT8 5'UTR 0.12 TCGA-ER-A19N-06 2 85868235 85868235 C T USP39 Missense_Mutation p.P474L 0.29 deleterious(0) probably_damaging(0.969) TCGA-ER-A19N-06 2 89544428 89544428 C T IGKV2-30 Missense_Mutation p.G66S 0.26 deleterious(0.02) benign(0.183) TCGA-ER-A19N-06 2 99861920 99861920 C T LYG2 Silent p.G62G 0.14 TCGA-ER-A19N-06 3 100086908 100086908 C A TOMM70A Missense_Mutation p.M551I 0.15 deleterious(0.02) benign(0.403) TCGA-ER-A19N-06 3 100093971 100093971 C T TOMM70A Missense_Mutation p.R373K 0.17 tolerated(0.07) possibly_damaging(0.615) TCGA-ER-A19N-06 3 102175187 102175187 G A ZPLD1 Missense_Mutation p.E176K 0.13 deleterious(0.01) probably_damaging(0.947) TCGA-ER-A19N-06 3 111602855 111602855 G A PHLDB2 Intron 0.17 TCGA-ER-A19N-06 3 111888124 111888124 G A SLC9C1 Missense_Mutation p.P991S 0.12 deleterious(0) probably_damaging(0.997) TCGA-ER-A19N-06 3 111923085 111923085 G A SLC9C1 Missense_Mutation p.R718C 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19N-06 3 123987877 123987877 C T KALRN Silent p.D246D 0.38 TCGA-ER-A19N-06 3 128971792 128971792 C T COPG1 Missense_Mutation p.T106I 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-ER-A19N-06 3 128971793 128971793 C T COPG1 Silent p.T106T 0.12 TCGA-ER-A19N-06 3 128976654 128976654 C T COPG1 Silent p.I274I 0.15 TCGA-ER-A19N-06 3 13368866 13368866 A C NUP210 Missense_Mutation p.L1453R 0.19 deleterious(0) possibly_damaging(0.84) TCGA-ER-A19N-06 3 134670831 134670831 G A EPHB1 Missense_Mutation p.V248M 0.16 deleterious(0) probably_damaging(0.987) TCGA-ER-A19N-06 3 137787163 137787163 C T DZIP1L Silent p.K554K 0.16 TCGA-ER-A19N-06 3 137787164 137787164 T C DZIP1L Missense_Mutation p.K554R 0.16 tolerated(0.08) benign(0.037) TCGA-ER-A19N-06 3 138184246 138184246 G A ESYT3 Silent p.R384R 0.18 TCGA-ER-A19N-06 3 151155011 151155011 A G IGSF10 Silent p.S2446S 0.14 TCGA-ER-A19N-06 3 151598496 151598496 G A SUCNR1 Nonsense_Mutation p.W55* 0.16 TCGA-ER-A19N-06 3 164777010 164777010 G A SI Silent p.L408L 0.16 TCGA-ER-A19N-06 3 167023676 167023676 C T ZBBX Missense_Mutation p.E494K 0.16 tolerated(0.11) possibly_damaging(0.625) TCGA-ER-A19N-06 3 17109538 17109538 G A PLCL2 Nonsense_Mutation p.W936* 0.18 TCGA-ER-A19N-06 3 172694801 172694801 C T SPATA16 Missense_Mutation p.G297E 0.09 deleterious(0) probably_damaging(0.969) TCGA-ER-A19N-06 3 196831779 196831779 G A DLG1 Missense_Mutation p.P547L 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19N-06 3 2928779 2928779 G A CNTN4 Missense_Mutation p.A271T 0.20 tolerated(0.06) benign(0.119) TCGA-ER-A19N-06 3 32995815 32995815 C T CCR4 Missense_Mutation p.P301S 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 3 33171502 33171502 C T CRTAP Missense_Mutation p.P289S 0.11 tolerated(0.08) benign(0.052) TCGA-ER-A19N-06 3 37368450 37368450 G A GOLGA4 Silent p.L1713L 0.16 TCGA-ER-A19N-06 3 38755548 38755548 C T SCN10A Silent p.A1235A 0.15 TCGA-ER-A19N-06 3 38921572 38921572 C T SCN11A Missense_Mutation p.E1088K 0.18 tolerated(0.3) benign(0.002) TCGA-ER-A19N-06 3 39307484 39307484 T C CX3CR1 Missense_Mutation p.N205D 0.20 tolerated(0.43) benign(0.022) TCGA-ER-A19N-06 3 46399345 46399345 G A CCR2 Silent p.G109G 0.18 TCGA-ER-A19N-06 3 49043169 49043169 C T P4HTM Missense_Mutation p.P406S 0.19 tolerated(0.08) possibly_damaging(0.803) TCGA-ER-A19N-06 3 52328243 52328243 C T GLYCTK 3'Flank 0.13 TCGA-ER-A19N-06 3 52328244 52328244 C T GLYCTK 3'Flank 0.13 TCGA-ER-A19N-06 3 52380497 52380497 T C DNAH1 Missense_Mutation p.F556L 0.27 benign(0.046) TCGA-ER-A19N-06 3 52539133 52539133 C T STAB1 Missense_Mutation p.P498S 0.19 tolerated(0.74) benign(0.007) TCGA-ER-A19N-06 3 56649275 56649275 T C CCDC66 Silent p.T562T 0.13 TCGA-ER-A19N-06 3 73433367 73433367 C T PDZRN3 Missense_Mutation p.E784K 0.18 tolerated(0.36) benign(0.028) TCGA-ER-A19N-06 3 77600060 77600060 C T ROBO2 Missense_Mutation p.S400F 0.22 deleterious(0) possibly_damaging(0.788) TCGA-ER-A19N-06 3 77600111 77600111 T A ROBO2 Nonsense_Mutation p.L417* 0.14 TCGA-ER-A19N-06 3 9057317 9057317 G A SRGAP3 Missense_Mutation p.P593S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19N-06 3 97439109 97439109 G A EPHA6 Missense_Mutation p.G930E 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 3 97983449 97983449 G A OR5H6 Missense_Mutation p.M107I 0.13 tolerated(0.21) benign(0.001) TCGA-ER-A19N-06 4 126370109 126370109 C T FAT4 Silent p.F2646F 0.21 TCGA-ER-A19N-06 4 126411606 126411606 G A FAT4 Silent p.P4543P 0.25 TCGA-ER-A19N-06 4 128584647 128584647 G A INTU Missense_Mutation p.E294K 0.15 tolerated(0.18) benign(0.061) TCGA-ER-A19N-06 4 134071430 134071430 T C PCDH10 Silent p.I45I 0.16 TCGA-ER-A19N-06 4 1343498 1343498 C T UVSSA Silent p.P95P 0.17 TCGA-ER-A19N-06 4 138452728 138452728 T A PCDH18 Missense_Mutation p.H172L 0.13 tolerated(0.35) benign(0.158) TCGA-ER-A19N-06 4 145628247 145628247 C T HHIP Missense_Mutation p.P331L 0.14 tolerated(0.11) benign(0.375) TCGA-ER-A19N-06 4 146696987 146696987 C T ZNF827 Missense_Mutation p.V883I 0.14 tolerated(0.13) benign(0.369) TCGA-ER-A19N-06 4 154625875 154625875 G A TLR2 Missense_Mutation p.G606R 0.24 tolerated(0.07) possibly_damaging(0.466) TCGA-ER-A19N-06 4 158254447 158254447 G A GRIA2 Missense_Mutation p.G366E 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 4 164272298 164272298 G A NPY5R Silent p.K291K 0.14 TCGA-ER-A19N-06 4 169060698 169060698 G A ANXA10 Missense_Mutation p.M54I 0.21 tolerated(0.06) benign(0.11) TCGA-ER-A19N-06 4 173232893 173232893 C T GALNTL6 Missense_Mutation p.R126C 0.14 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 4 17524602 17524602 G A CLRN2 Missense_Mutation p.M123I 0.16 tolerated(0.29) benign(0) TCGA-ER-A19N-06 4 17814690 17814690 C T NCAPG Missense_Mutation p.P156S 0.21 tolerated(0.15) benign(0.299) TCGA-ER-A19N-06 4 183659601 183659601 G A TENM3 Missense_Mutation p.E1095K 0.20 deleterious(0) possibly_damaging(0.636) TCGA-ER-A19N-06 4 183673135 183673135 G A TENM3 Missense_Mutation p.R1271K 0.15 tolerated(0.09) benign(0.001) TCGA-ER-A19N-06 4 183717907 183717907 G A TENM3 Nonsense_Mutation p.W2444* 0.18 TCGA-ER-A19N-06 4 184367982 184367982 C T CDKN2AIP Missense_Mutation p.S382F 0.12 deleterious(0) unknown(0) TCGA-ER-A19N-06 4 23826111 23826111 G A PPARGC1A Missense_Mutation p.L260F 0.13 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 4 38775819 38775819 G A TLR10 Silent p.L465L 0.20 TCGA-ER-A19N-06 4 40245228 40245228 G A RHOH Silent p.Q74Q 0.20 TCGA-ER-A19N-06 4 4199349 4199349 G A OTOP1 Silent p.I404I 0.20 TCGA-ER-A19N-06 4 55955063 55955063 C T KDR Missense_Mutation p.G1161E 0.24 deleterious(0) probably_damaging(0.997) TCGA-ER-A19N-06 4 56448350 56448350 G A PDCL2 Missense_Mutation p.P21S 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 4 5743514 5743514 C T EVC Silent p.Y258Y 0.10 TCGA-ER-A19N-06 4 5837688 5837688 C T CRMP1 Nonsense_Mutation p.W526* 0.12 TCGA-ER-A19N-06 4 62363038 62363038 C T LPHN3 Silent p.F9F 0.19 TCGA-ER-A19N-06 4 6296781 6296781 C T WFS1 Silent p.I242I 0.19 TCGA-ER-A19N-06 4 6380219 6380219 G A PPP2R2C Silent p.L83L 0.14 TCGA-ER-A19N-06 4 650079 650079 C T PDE6B Nonsense_Mutation p.Q369* 0.16 TCGA-ER-A19N-06 4 70620938 70620938 T C SULT1B1 5'UTR 0.09 TCGA-ER-A19N-06 4 74364883 74364883 G A AFM Missense_Mutation p.V448M 0.13 tolerated(0.4) possibly_damaging(0.793) TCGA-ER-A19N-06 4 995681 995681 C T IDUA Intron 0.40 TCGA-ER-A19N-06 5 115336309 115336309 C T AQPEP Missense_Mutation p.S534F 0.09 deleterious(0) probably_damaging(0.99) TCGA-ER-A19N-06 5 13714522 13714522 G A DNAH5 Missense_Mutation p.P4373S 0.10 possibly_damaging(0.876) TCGA-ER-A19N-06 5 138700376 138700376 C T PAIP2 Nonsense_Mutation p.Q88* 0.10 TCGA-ER-A19N-06 5 13900349 13900349 C T DNAH5 Missense_Mutation p.R742Q 0.15 possibly_damaging(0.553) TCGA-ER-A19N-06 5 139232076 139232076 C T NRG2 Silent p.G495G 0.36 TCGA-ER-A19N-06 5 140255358 140255358 G A PCDHA12 Missense_Mutation p.E101K 0.09 tolerated_low_confidence(0.11) benign(0.123) TCGA-ER-A19N-06 5 140572250 140572250 G A PCDHB10 Missense_Mutation p.G42E 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A19N-06 5 140725108 140725108 C T PCDHGA3 Missense_Mutation p.S503F 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.581) TCGA-ER-A19N-06 5 140746136 140746136 C T PCDHGA5 Missense_Mutation p.R747W 0.28 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-ER-A19N-06 5 141336804 141336804 C T PCDH12 Missense_Mutation p.E205K 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 5 147204205 147204205 G A SPINK1 3'UTR 0.38 TCGA-ER-A19N-06 5 149200044 149200044 G A PPARGC1B Missense_Mutation p.D43N 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 5 150885198 150885198 C T FAT2 Silent p.R4326R 0.26 TCGA-ER-A19N-06 5 153085609 153085609 G A GRIA1 Missense_Mutation p.G612E 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 5 156920179 156920179 C T ADAM19 Silent p.A570A 0.31 TCGA-ER-A19N-06 5 17354308 17354308 G A CTD-2139B15.2 RNA 0.25 TCGA-ER-A19N-06 5 176316452 176316452 C T HK3 Missense_Mutation p.A282T 0.39 tolerated(0.41) benign(0.032) TCGA-ER-A19N-06 5 177421179 177421179 C T PROP1 Silent p.R90R 0.34 TCGA-ER-A19N-06 5 178410107 178410107 G A GRM6 Missense_Mutation p.S747L 0.32 deleterious(0.02) possibly_damaging(0.876) TCGA-ER-A19N-06 5 26881414 26881414 G A CDH9 Missense_Mutation p.S734L 0.36 deleterious(0) probably_damaging(0.994) TCGA-ER-A19N-06 5 32091217 32091217 A G PDZD2 Missense_Mutation p.S2555G 0.18 tolerated(0.79) benign(0.006) TCGA-ER-A19N-06 5 35779292 35779292 A G SPEF2 Missense_Mutation p.S1431G 0.25 tolerated(0.22) benign(0.001) TCGA-ER-A19N-06 5 37169642 37169642 G A C5orf42 Missense_Mutation p.P2162S 0.34 tolerated(0.46) benign(0.02) TCGA-ER-A19N-06 5 38496621 38496621 G A LIFR Missense_Mutation p.S583F 0.29 tolerated(0.1) benign(0.008) TCGA-ER-A19N-06 5 38502883 38502883 C T LIFR Missense_Mutation p.G486R 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 5 41064581 41064581 G A MROH2B Silent p.F151F 0.27 TCGA-ER-A19N-06 5 76645267 76645267 G A PDE8B Silent p.R300R 0.14 TCGA-ER-A19N-06 5 78610164 78610164 C T JMY Nonsense_Mutation p.Q717* 0.30 TCGA-ER-A19N-06 5 94784108 94784108 G A FAM81B Missense_Mutation p.E389K 0.30 tolerated(0.17) benign(0.033) TCGA-ER-A19N-06 6 117858354 117858354 C T DCBLD1 Silent p.S242S 0.18 TCGA-ER-A19N-06 6 133077074 133077074 G A VNN2 Missense_Mutation p.R149C 0.23 deleterious(0) possibly_damaging(0.606) TCGA-ER-A19N-06 6 133138447 133138447 G A RPS12 Intron 0.23 TCGA-ER-A19N-06 6 136429884 136429884 G A PDE7B Missense_Mutation p.R33K 0.23 tolerated_low_confidence(0.14) benign(0.001) TCGA-ER-A19N-06 6 136597125 136597125 G A BCLAF1 Missense_Mutation p.P513L 0.07 tolerated(0.08) possibly_damaging(0.851) TCGA-ER-A19N-06 6 161007508 161007508 G A LPA Missense_Mutation p.P1368S 0.10 deleterious_low_confidence(0.03) probably_damaging(0.958) TCGA-ER-A19N-06 6 167343198 167343198 C T RNASET2 Missense_Mutation p.G217R 0.18 tolerated(0.51) benign(0.039) TCGA-ER-A19N-06 6 25769267 25769267 C T SLC17A4 Missense_Mutation p.S49L 0.46 tolerated(0.43) benign(0.023) TCGA-ER-A19N-06 6 28217580 28217580 G A ZKSCAN4 Silent p.L152L 0.07 TCGA-ER-A19N-06 6 28473486 28473486 G A GPX6 Silent p.F151F 0.50 TCGA-ER-A19N-06 6 30633507 30633507 G A DHX16 Missense_Mutation p.P224S 0.46 tolerated(0.19) unknown(0) TCGA-ER-A19N-06 6 31655435 31655435 G - ABHD16A Frame_Shift_Del p.F511Sfs*9 0.33 TCGA-ER-A19N-06 6 31659677 31659677 G A ABHD16A Silent p.T215T 0.50 TCGA-ER-A19N-06 6 31912609 31912609 G A CFB Missense_Mutation p.E517K 0.43 tolerated(0.61) benign(0.001) TCGA-ER-A19N-06 6 38879331 38879331 C T DNAH8 Silent p.F3059F 0.10 TCGA-ER-A19N-06 6 40359793 40359793 C T LRFN2 Silent p.T753T 0.12 TCGA-ER-A19N-06 6 41654895 41654895 C T TFEB Missense_Mutation p.R247Q 0.39 deleterious(0) probably_damaging(0.985) TCGA-ER-A19N-06 6 43413674 43413674 C T ABCC10 Missense_Mutation p.T1123I 0.62 deleterious(0.01) possibly_damaging(0.529) TCGA-ER-A19N-06 6 43413675 43413675 C T ABCC10 Silent p.T1123T 0.62 TCGA-ER-A19N-06 6 50791299 50791299 C T TFAP2B Silent p.S87S 0.11 TCGA-ER-A19N-06 6 50791300 50791300 C T TFAP2B Missense_Mutation p.H88Y 0.11 deleterious(0.03) benign(0.265) TCGA-ER-A19N-06 6 57015666 57015666 G A ZNF451 Intron 0.14 TCGA-ER-A19N-06 6 72011392 72011392 C T OGFRL1 Silent p.L332L 0.29 TCGA-ER-A19N-06 6 87970414 87970414 C T ZNF292 Missense_Mutation p.P2356L 0.11 deleterious(0.03) benign(0.356) TCGA-ER-A19N-06 7 106840627 106840627 G A HBP1 Missense_Mutation p.D470N 0.10 deleterious(0.01) probably_damaging(1) TCGA-ER-A19N-06 7 107872849 107872849 G A NRCAM Silent p.T116T 0.18 TCGA-ER-A19N-06 7 123143007 123143007 C T IQUB Silent p.R286R 0.14 TCGA-ER-A19N-06 7 129945709 129945709 C T CPA4 Silent p.I180I 0.11 TCGA-ER-A19N-06 7 130027837 130027837 G A CPA1 Silent p.L415L 0.15 TCGA-ER-A19N-06 7 141479032 141479032 C T TAS2R4 Silent p.V248V 0.15 TCGA-ER-A19N-06 7 142032317 142032317 C T TRBV7-1 Missense_Mutation p.S46L 0.37 deleterious(0.04) benign(0.444) TCGA-ER-A19N-06 7 142144055 142144055 G A TRBV6-7 Silent p.A10A 0.09 TCGA-ER-A19N-06 7 142378908 142378908 G A MTRNR2L6 3'Flank 0.14 TCGA-ER-A19N-06 7 143098582 143098582 C T EPHA1 Silent p.G89G 0.24 TCGA-ER-A19N-06 7 143453526 143453526 C T CTAGE6 Missense_Mutation p.R409Q 0.10 tolerated(0.08) benign(0.22) TCGA-ER-A19N-06 7 143747859 143747859 G A OR2A5 Missense_Mutation p.R122Q 0.21 deleterious(0.02) probably_damaging(0.942) TCGA-ER-A19N-06 7 143747899 143747899 C T OR2A5 Silent p.I135I 0.13 TCGA-ER-A19N-06 7 143884125 143884125 G A ARHGEF35 Missense_Mutation p.P451L 0.18 deleterious(0) probably_damaging(0.961) TCGA-ER-A19N-06 7 148801467 148801467 G A ZNF425 Missense_Mutation p.P499L 0.22 tolerated(0.17) benign(0.145) TCGA-ER-A19N-06 7 23827599 23827599 G A STK31 Missense_Mutation p.E830K 0.13 deleterious(0) probably_damaging(0.951) TCGA-ER-A19N-06 7 25268055 25268055 C T NPVF Missense_Mutation p.E2K 0.15 tolerated(0.48) benign(0.024) TCGA-ER-A19N-06 7 27168767 27168767 G A HOXA4 3'UTR 0.10 TCGA-ER-A19N-06 7 31142919 31142919 C T ADCYAP1R1 Missense_Mutation p.S400F 0.25 tolerated(1) benign(0.049) TCGA-ER-A19N-06 7 31792978 31792978 C T PDE1C 3'UTR 0.11 TCGA-ER-A19N-06 7 34118707 34118707 C T BMPER Silent p.R439R 0.16 TCGA-ER-A19N-06 7 36450702 36450702 G A ANLN Missense_Mutation p.R441Q 0.23 deleterious(0.03) probably_damaging(0.978) TCGA-ER-A19N-06 7 36657927 36657927 G A AOAH Missense_Mutation p.P243S 0.16 tolerated(0.24) probably_damaging(1) TCGA-ER-A19N-06 7 37927957 37927957 G A NME8 Silent p.R442R 0.21 TCGA-ER-A19N-06 7 55863612 55863612 C T SEPT14 Silent p.K431K 0.15 TCGA-ER-A19N-06 7 62753117 62753117 C T ZNF733P RNA 0.10 TCGA-ER-A19N-06 7 76062930 76062930 G C ZP3 Missense_Mutation p.A227P 0.13 deleterious(0.03) benign(0.117) TCGA-ER-A19N-06 7 76984542 76984542 G A GSAP Silent p.F442F 0.15 TCGA-ER-A19N-06 7 80108245 80108245 C T GNAT3 Missense_Mutation p.E125K 0.18 tolerated(0.64) benign(0.061) TCGA-ER-A19N-06 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.11 unknown(0) TCGA-ER-A19N-06 7 82545686 82545686 G A PCLO Silent p.T3872T 0.15 TCGA-ER-A19N-06 7 83025989 83025989 C T SEMA3E Missense_Mutation p.E475K 0.10 deleterious(0) probably_damaging(0.998) TCGA-ER-A19N-06 7 87913481 87913481 C T STEAP4 Missense_Mutation p.G35E 0.14 deleterious(0) probably_damaging(0.969) TCGA-ER-A19N-06 7 92134177 92134177 G A PEX1 Missense_Mutation p.A647V 0.17 tolerated(0.54) benign(0.023) TCGA-ER-A19N-06 7 94167139 94167139 C T CASD1 Missense_Mutation p.S400L 0.18 tolerated(0.6) benign(0.264) TCGA-ER-A19N-06 7 94879485 94879485 C T PPP1R9A Missense_Mutation p.L772F 0.16 deleterious(0) probably_damaging(0.996) TCGA-ER-A19N-06 7 98524910 98524910 G A TRRAP Silent p.K1032K 0.14 TCGA-ER-A19N-06 8 104709350 104709350 G A RIMS2 Silent p.Q71Q 0.10 TCGA-ER-A19N-06 8 110457571 110457571 A T PKHD1L1 Missense_Mutation p.N1825Y 0.09 deleterious(0) possibly_damaging(0.81) TCGA-ER-A19N-06 8 113293492 113293492 G C CSMD3 Missense_Mutation p.S3140C 0.42 deleterious(0) probably_damaging(0.93) TCGA-ER-A19N-06 8 11970466 11970466 G A ZNF705D Silent p.G234G 0.12 TCGA-ER-A19N-06 8 121309794 121309794 C T COL14A1 Silent p.A1427A 0.13 TCGA-ER-A19N-06 8 124518802 124518802 C T FBXO32 Missense_Mutation p.G222S 0.29 tolerated(0.18) possibly_damaging(0.465) TCGA-ER-A19N-06 8 133153554 133153554 C T KCNQ3 Silent p.R429R 0.37 TCGA-ER-A19N-06 8 133184935 133184935 G A KCNQ3 Silent p.I350I 0.30 TCGA-ER-A19N-06 8 142228576 142228576 C T SLC45A4 Missense_Mutation p.G337D 0.33 tolerated(0.07) benign(0.029) TCGA-ER-A19N-06 8 22009377 22009377 G A LGI3 Silent p.L211L 0.11 TCGA-ER-A19N-06 8 22105716 22105716 C T POLR3D Silent p.I137I 0.33 TCGA-ER-A19N-06 8 23708886 23708886 C T STC1 Silent p.R140R 0.27 TCGA-ER-A19N-06 8 2820894 2820894 G A CSMD1 Missense_Mutation p.P3102S 0.26 benign(0.002) TCGA-ER-A19N-06 8 28902934 28902934 C T HMBOX1 Missense_Mutation p.A303V 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 8 52387667 52387667 C T PXDNL Missense_Mutation p.D187N 0.22 tolerated(0.16) benign(0.133) TCGA-ER-A19N-06 8 53044549 53044549 G A ST18 Missense_Mutation p.H879Y 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 8 55541857 55541857 C T RP1 Silent p.L1805L 0.50 TCGA-ER-A19N-06 8 65537045 65537045 C T CYP7B1 Silent p.V58V 0.24 TCGA-ER-A19N-06 8 68178328 68178328 T C ARFGEF1 Missense_Mutation p.Y679C 0.28 tolerated(0.18) possibly_damaging(0.525) TCGA-ER-A19N-06 8 70553060 70553060 A G SULF1 Missense_Mutation p.S857G 0.12 deleterious_low_confidence(0.05) benign(0.002) TCGA-ER-A19N-06 8 70674071 70674071 C T SLCO5A1 Missense_Mutation p.G316E 0.30 deleterious(0) probably_damaging(0.995) TCGA-ER-A19N-06 8 87680392 87680392 C T CNGB3 Silent p.K166K 0.12 TCGA-ER-A19N-06 8 91094259 91094259 C G CALB1 Missense_Mutation p.G51R 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A19N-06 8 92972449 92972449 C T RUNX1T1 3'UTR 0.24 TCGA-ER-A19N-06 8 95178008 95178008 C T CDH17 Silent p.T421T 0.20 TCGA-ER-A19N-06 8 95186399 95186399 G A CDH17 Missense_Mutation p.P172S 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 9 104130542 104130542 G A BAAT Missense_Mutation p.R177W 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19N-06 9 107266793 107266793 A C OR13F1 Missense_Mutation p.N84H 0.17 tolerated(0.28) possibly_damaging(0.878) TCGA-ER-A19N-06 9 107288775 107288775 G A OR13C4 Missense_Mutation p.S239F 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 9 107289416 107289416 G A OR13C4 Silent p.I25I 0.17 TCGA-ER-A19N-06 9 112003968 112003968 G A EPB41L4B Intron 0.15 TCGA-ER-A19N-06 9 114178561 114178561 G A KIAA0368 Silent p.A763A 0.15 TCGA-ER-A19N-06 9 115760460 115760460 G A ZNF883 RNA 0.19 TCGA-ER-A19N-06 9 116079162 116079162 C T WDR31 Missense_Mutation p.G324E 0.24 deleterious(0) probably_damaging(0.994) TCGA-ER-A19N-06 9 116079163 116079163 C T WDR31 Missense_Mutation p.G324R 0.23 deleterious(0) probably_damaging(0.994) TCGA-ER-A19N-06 9 119568093 119568093 C T ASTN2 Silent p.V687V 0.17 TCGA-ER-A19N-06 9 120475443 120475443 C T TLR4 Missense_Mutation p.P346L 0.13 deleterious(0) probably_damaging(0.973) TCGA-ER-A19N-06 9 125835866 125835866 G A RABGAP1 Silent p.K673K 0.14 TCGA-ER-A19N-06 9 131554839 131554839 C T TBC1D13 Silent p.I123I 0.14 TCGA-ER-A19N-06 9 133769068 133769068 C T QRFP Nonsense_Mutation p.W53* 0.25 TCGA-ER-A19N-06 9 135224778 135224778 G T SETX Missense_Mutation p.S13Y 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-ER-A19N-06 9 137591825 137591825 G A COL5A1 Silent p.L116L 0.14 TCGA-ER-A19N-06 9 138905089 138905089 G A NACC2 Missense_Mutation p.P404L 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 9 138905090 138905090 G A NACC2 Missense_Mutation p.P404S 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19N-06 9 21367595 21367595 C G IFNA13 Missense_Mutation p.D139H 0.11 deleterious(0.02) benign(0.18) TCGA-ER-A19N-06 9 33960857 33960857 C T UBAP2 Silent p.V255V 0.19 TCGA-ER-A19N-06 9 34637064 34637064 C T SIGMAR1 Silent p.S125S 0.11 TCGA-ER-A19N-06 9 39176055 39176055 G A CNTNAP3 Missense_Mutation p.S321L 0.20 tolerated(0.05) benign(0.048) TCGA-ER-A19N-06 9 40772826 40772826 G A ZNF658 Nonsense_Mutation p.Q817* 0.21 TCGA-ER-A19N-06 9 72471547 72471547 C T C9orf135 Missense_Mutation p.A113V 0.18 tolerated(0.09) benign(0.384) TCGA-ER-A19N-06 9 74526531 74526531 G A C9orf85 5'UTR 0.20 TCGA-ER-A19N-06 9 79324689 79324689 C T PRUNE2 Nonsense_Mutation p.W834* 0.12 TCGA-ER-A19N-06 9 91616967 91616967 C T S1PR3 Silent p.I284I 0.16 TCGA-ER-A19N-06 9 99084312 99084312 G A SLC35D2 Silent p.F294F 0.17 TCGA-ER-A19N-06 X 107422663 107422663 G A COL4A6 Missense_Mutation p.P714S 0.24 possibly_damaging(0.549) TCGA-ER-A19N-06 X 114879411 114879411 T A PLS3 Missense_Mutation p.H418Q 0.12 tolerated(0.13) probably_damaging(0.974) TCGA-ER-A19N-06 X 125686141 125686141 C T DCAF12L1 Missense_Mutation p.G151S 0.18 deleterious(0) probably_damaging(0.972) TCGA-ER-A19N-06 X 130222625 130222625 C T ARHGAP36 Missense_Mutation p.P504S 0.33 tolerated(0.12) benign(0.211) TCGA-ER-A19N-06 X 131212865 131212865 C T FRMD7 Missense_Mutation p.E394K 0.27 deleterious(0) probably_damaging(0.995) TCGA-ER-A19N-06 X 134706811 134706811 G A DDX26B Silent p.V453V 0.42 TCGA-ER-A19N-06 X 1401656 1401656 G A CSF2RA Silent p.L20L 0.18 TCGA-ER-A19N-06 X 141291321 141291321 G A MAGEC2 Silent p.F151F 0.42 TCGA-ER-A19N-06 X 142718198 142718198 C T SLITRK4 Missense_Mutation p.E243K 0.32 deleterious(0) probably_damaging(0.98) TCGA-ER-A19N-06 X 142718918 142718918 G A SLITRK4 Silent p.L3L 0.28 TCGA-ER-A19N-06 X 150348275 150348275 G A GPR50 Missense_Mutation p.D74N 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A19N-06 X 151935535 151935535 C T MAGEA3 Missense_Mutation p.R211K 0.35 tolerated(0.06) benign(0) TCGA-ER-A19N-06 X 152089248 152089248 C T ZNF185 Intron 0.41 TCGA-ER-A19N-06 X 1546836 1546836 G A ASMTL Missense_Mutation p.P230S 0.22 deleterious(0.04) benign(0.411) TCGA-ER-A19N-06 X 1546837 1546837 G A ASMTL Silent p.I229I 0.22 TCGA-ER-A19N-06 X 47099983 47099983 C T USP11 Intron 0.24 TCGA-ER-A19N-06 X 50351041 50351041 G A SHROOM4 Missense_Mutation p.S1034L 0.47 tolerated(0.12) benign(0.001) TCGA-ER-A19N-06 X 52825278 52825278 C T SPANXN5 3'UTR 0.44 TCGA-ER-A19N-06 X 54957315 54957315 C T TRO Silent p.F1386F 0.41 TCGA-ER-A19N-06 X 67937584 67937584 G A STARD8 Silent p.K276K 0.31 TCGA-ER-A19N-06 X 67937585 67937585 G A STARD8 Missense_Mutation p.A277T 0.31 tolerated(0.21) benign(0.004) TCGA-ER-A19N-06 X 89177276 89177276 C T TGIF2LX Silent p.I64I 0.35 TCGA-ER-A19N-06 X 92928261 92928261 G A NAP1L3 Missense_Mutation p.H15Y 0.35 deleterious_low_confidence(0) benign(0.018) TCGA-ER-A19N-06 Y 4968578 4968578 C T PCDH11Y Missense_Mutation p.P987S 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A19O-06 10 114169401 114169401 G A ACSL5 Silent p.G279G 0.20 TCGA-ER-A19O-06 10 124389503 124389503 A T DMBT1 Missense_Mutation p.N1810I 0.28 tolerated(0.18) probably_damaging(0.959) TCGA-ER-A19O-06 10 37419179 37419179 C T ANKRD30A Missense_Mutation p.S72F 0.20 deleterious(0.03) possibly_damaging(0.904) TCGA-ER-A19O-06 10 43606829 43606829 G A RET Missense_Mutation p.E480K 0.26 tolerated(0.18) benign(0.011) TCGA-ER-A19O-06 10 43870072 43870072 G A FXYD4 Missense_Mutation p.D28N 0.22 tolerated(0.05) unknown(0) TCGA-ER-A19O-06 10 50835803 50835803 G A CHAT Nonsense_Mutation p.W361* 0.18 TCGA-ER-A19O-06 10 95147614 95147614 C T MYOF Silent p.E546E 0.22 TCGA-ER-A19O-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.25 tolerated(0.19) benign(0.064) TCGA-ER-A19O-06 11 106810345 106810345 C T GUCY1A2 Silent p.Q349Q 0.33 TCGA-ER-A19O-06 11 117299431 117299431 G A DSCAML1 Silent p.P1985P 0.78 TCGA-ER-A19O-06 11 32635092 32635092 C T CCDC73 Silent p.S924S 0.23 TCGA-ER-A19O-06 11 46780829 46780829 G A CKAP5 Missense_Mutation p.P1520S 0.26 tolerated(0.07) probably_damaging(0.954) TCGA-ER-A19O-06 11 47367775 47367775 T G MYBPC3 Missense_Mutation p.D358A 0.18 tolerated(0.07) benign(0.184) TCGA-ER-A19O-06 11 5444160 5444160 C T OR51Q1 Silent p.L244L 0.24 TCGA-ER-A19O-06 11 55540935 55540935 C T OR5D13 Nonsense_Mutation p.Q8* 0.18 TCGA-ER-A19O-06 11 63078618 63078618 C T SLC22A10 3'UTR 0.32 TCGA-ER-A19O-06 11 64521136 64521136 G A PYGM Missense_Mutation p.P420S 0.31 deleterious(0.04) possibly_damaging(0.604) TCGA-ER-A19O-06 11 64532981 64532981 G A SF1 Missense_Mutation p.P656L 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-ER-A19O-06 11 7818403 7818403 G A OR5P2 Silent p.I29I 0.22 TCGA-ER-A19O-06 12 104046378 104046378 G A STAB2 Silent p.V434V 0.18 TCGA-ER-A19O-06 12 108985911 108985911 G A TMEM119 Silent p.F83F 0.38 TCGA-ER-A19O-06 12 111951235 111951235 G A ATXN2 Missense_Mutation p.P655L 0.29 benign(0.354) TCGA-ER-A19O-06 12 12022745 12022745 C T ETV6 Missense_Mutation p.S284F 0.17 tolerated(0.08) possibly_damaging(0.553) TCGA-ER-A19O-06 12 124268493 124268493 G A DNAH10 Splice_Site p.X273_splice 0.40 TCGA-ER-A19O-06 12 14804919 14804919 C T GUCY2C Missense_Mutation p.E527K 0.11 tolerated(0.3) possibly_damaging(0.534) TCGA-ER-A19O-06 12 14804923 14804923 G A GUCY2C Silent p.F525F 0.30 TCGA-ER-A19O-06 12 15261990 15261990 G A RERG 3'UTR 0.20 TCGA-ER-A19O-06 12 404935 404935 G A KDM5A Missense_Mutation p.P1420L 0.26 tolerated(0.07) benign(0.002) TCGA-ER-A19O-06 12 49724790 49724790 C T TROAP Intron 0.19 TCGA-ER-A19O-06 12 52826938 52826938 G A KRT75 Silent p.L199L 0.24 TCGA-ER-A19O-06 12 53494516 53494516 G A IGFBP6 Missense_Mutation p.E119K 0.21 deleterious(0.04) benign(0.424) TCGA-ER-A19O-06 12 54911318 54911318 C T NCKAP1L Missense_Mutation p.A366V 0.17 tolerated(0.28) benign(0.026) TCGA-ER-A19O-06 12 56355182 56355184 AGA - PMEL In_Frame_Del p.F84del 0.21 TCGA-ER-A19O-06 12 7288854 7288854 C T CLSTN3 Silent p.F265F 0.21 TCGA-ER-A19O-06 12 7805350 7805350 G A APOBEC1 Silent p.I42I 0.17 TCGA-ER-A19O-06 12 91502687 91502687 C T LUM Missense_Mutation p.D24N 0.27 tolerated(0.11) benign(0.003) TCGA-ER-A19O-06 13 26402291 26402291 G A ATP8A2 Silent p.Q905Q 0.19 TCGA-ER-A19O-06 13 36050146 36050146 C T MAB21L1 Missense_Mutation p.E44K 0.20 tolerated(0.05) possibly_damaging(0.824) TCGA-ER-A19O-06 13 38143519 38143519 C T POSTN Silent p.E783E 0.11 TCGA-ER-A19O-06 13 72053370 72053370 C T DACH1 Missense_Mutation p.D603N 0.25 benign(0.431) TCGA-ER-A19O-06 13 98829441 98829441 A G RNF113B Missense_Mutation p.V17A 0.14 tolerated(0.09) benign(0.021) TCGA-ER-A19O-06 14 101490176 101490176 G A MIR299 RNA 0.23 TCGA-ER-A19O-06 14 106092213 106092213 G A IGHG4 Missense_Mutation p.S64F 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A19O-06 14 20345323 20345323 G A OR4K2 Silent p.R299R 0.11 TCGA-ER-A19O-06 14 20389538 20389538 A T OR4K5 Missense_Mutation p.Y258F 0.14 deleterious(0) probably_damaging(0.999) TCGA-ER-A19O-06 14 20711871 20711871 G A OR11H4 Missense_Mutation p.M307I 0.26 tolerated(0.09) benign(0.188) TCGA-ER-A19O-06 14 20851800 20851800 G A TEP1 Silent p.S1238S 0.23 TCGA-ER-A19O-06 14 22038677 22038677 G A OR10G3 Missense_Mutation p.L67F 0.18 deleterious(0) probably_damaging(0.934) TCGA-ER-A19O-06 14 22133748 22133748 G A OR4E2 Missense_Mutation p.G151E 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-ER-A19O-06 14 22538933 22538933 G A TRAV22 5'UTR 0.30 TCGA-ER-A19O-06 14 24624861 24624861 C T RNF31 Missense_Mutation p.P818L 0.24 tolerated(1) possibly_damaging(0.861) TCGA-ER-A19O-06 14 73409707 73409707 C T DCAF4 Missense_Mutation p.A146V 0.19 tolerated(0.94) benign(0.014) TCGA-ER-A19O-06 14 73637678 73637678 C T PSEN1 Silent p.V87V 0.30 TCGA-ER-A19O-06 14 94914815 94914815 G A SERPINA11 Silent p.I99I 0.15 TCGA-ER-A19O-06 15 20170095 20170095 G A IGHV1OR15-9 Silent p.A59A 0.24 TCGA-ER-A19O-06 15 25427583 25427583 C T SNORD115-6 3'Flank 0.16 TCGA-ER-A19O-06 15 45424173 45424173 C T DUOX1 Silent p.F3F 0.27 TCGA-ER-A19O-06 15 50189680 50189680 C T ATP8B4 Missense_Mutation p.E836K 0.23 deleterious(0.01) possibly_damaging(0.459) TCGA-ER-A19O-06 15 75684776 75684776 G A SIN3A Silent p.F886F 0.25 TCGA-ER-A19O-06 16 1271813 1271813 C T TPSG1 Missense_Mutation p.G314D 0.31 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-ER-A19O-06 16 1272234 1272234 C T TPSG1 Missense_Mutation p.D207N 0.27 deleterious(0.02) probably_damaging(1) TCGA-ER-A19O-06 16 19451758 19451758 G A TMC5 Missense_Mutation p.R133Q 0.22 tolerated_low_confidence(0.31) benign(0.005) TCGA-ER-A19O-06 16 23200933 23200933 A C SCNN1G Missense_Mutation p.I187L 0.25 tolerated(0.36) benign(0.133) TCGA-ER-A19O-06 16 30735349 30735349 C T SRCAP Missense_Mutation p.P1535L 0.23 possibly_damaging(0.713) TCGA-ER-A19O-06 16 30999285 30999285 C T HSD3B7 Silent p.F297F 0.25 TCGA-ER-A19O-06 16 3255038 3255038 C T OR1F1 Silent p.S264S 0.21 TCGA-ER-A19O-06 16 66918600 66918600 G C PDP2 Missense_Mutation p.G138A 0.32 deleterious(0.02) probably_damaging(0.922) TCGA-ER-A19O-06 16 71065807 71065807 G A HYDIN Missense_Mutation p.S848F 0.12 probably_damaging(0.989) TCGA-ER-A19O-06 16 77401460 77401460 C T ADAMTS18 Missense_Mutation p.G219D 0.19 tolerated(0.62) benign(0.001) TCGA-ER-A19O-06 17 10446476 10446476 A T MYH2 Silent p.G248G 0.22 TCGA-ER-A19O-06 17 12862115 12862115 C A ARHGAP44 Missense_Mutation p.P475Q 0.33 deleterious(0.01) possibly_damaging(0.885) TCGA-ER-A19O-06 17 2996152 2996152 G A OR1D2 Silent p.L47L 0.17 TCGA-ER-A19O-06 17 30692381 30692381 C T ZNF207 Missense_Mutation p.P235S 0.22 tolerated(0.09) probably_damaging(0.932) TCGA-ER-A19O-06 17 3195158 3195158 G A OR3A1 Missense_Mutation p.A240V 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-ER-A19O-06 17 36091630 36091630 G A HNF1B Missense_Mutation p.S334F 0.22 deleterious(0) possibly_damaging(0.616) TCGA-ER-A19O-06 17 38140725 38140725 C T PSMD3 Silent p.P133P 0.19 TCGA-ER-A19O-06 17 41151974 41151974 C T RPL27 Missense_Mutation p.R36C 0.16 tolerated(0.16) benign(0.007) TCGA-ER-A19O-06 17 42512489 42512489 G A GPATCH8 Missense_Mutation p.R98C 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A19O-06 17 46607774 46607774 C T HOXB1 Missense_Mutation p.E165K 0.29 tolerated(0.06) benign(0.341) TCGA-ER-A19O-06 17 61558977 61558977 C T ACE Silent p.S332S 0.28 TCGA-ER-A19O-06 17 64880735 64880735 G A CACNG5 Missense_Mutation p.G176E 0.21 deleterious(0) probably_damaging(0.939) TCGA-ER-A19O-06 17 65105774 65105774 C T HELZ Missense_Mutation p.R1316K 0.31 tolerated_low_confidence(0.14) benign(0.194) TCGA-ER-A19O-06 17 6913326 6913326 C A ALOX12 Missense_Mutation p.P565T 0.29 deleterious(0) probably_damaging(0.993) TCGA-ER-A19O-06 17 6930968 6930968 C T BCL6B 3'UTR 0.18 TCGA-ER-A19O-06 17 8159863 8159863 C T PFAS Silent p.V281V 0.32 TCGA-ER-A19O-06 18 30093406 30093406 C T WBP11P1 RNA 0.33 TCGA-ER-A19O-06 18 30795606 30795606 C T CCDC178 Missense_Mutation p.M662I 0.15 tolerated(0.89) benign(0) TCGA-ER-A19O-06 18 46783417 46783417 G A DYM Missense_Mutation p.R475C 0.18 deleterious(0.04) probably_damaging(0.976) TCGA-ER-A19O-06 18 57147453 57147453 C T CCBE1 Missense_Mutation p.G77E 0.36 deleterious(0) probably_damaging(0.952) TCGA-ER-A19O-06 18 61228356 61228356 G A SERPINB12 Silent p.T141T 0.16 TCGA-ER-A19O-06 18 66678264 66678264 C T CCDC102B Nonsense_Mutation p.Q453* 0.28 TCGA-ER-A19O-06 18 6859866 6859866 G A ARHGAP28 Silent p.G73G 0.17 TCGA-ER-A19O-06 18 74091512 74091512 G A ZNF516 Missense_Mutation p.P853L 0.26 deleterious(0) probably_damaging(0.997) TCGA-ER-A19O-06 19 10528340 10528340 C T PDE4A 5'Flank 0.40 TCGA-ER-A19O-06 19 14150436 14150436 A G IL27RA Missense_Mutation p.Q112R 0.27 tolerated(0.46) benign(0.002) TCGA-ER-A19O-06 19 17985012 17985012 G A SLC5A5 Silent p.T141T 0.22 TCGA-ER-A19O-06 19 33406376 33406376 C T CEP89 Missense_Mutation p.G478S 0.23 tolerated(1) benign(0) TCGA-ER-A19O-06 19 41597771 41597771 C T CYP2A13 Silent p.S263S 0.19 TCGA-ER-A19O-06 19 42396303 42396303 C T ARHGEF1 Intron 0.31 TCGA-ER-A19O-06 19 42569525 42569525 C T GRIK5 Missense_Mutation p.D32N 0.32 tolerated(0.06) possibly_damaging(0.636) TCGA-ER-A19O-06 19 44834031 44834031 G A ZNF112 Silent p.S99S 0.10 TCGA-ER-A19O-06 19 51986515 51986515 C T CEACAM18 Silent p.I367I 0.31 TCGA-ER-A19O-06 19 55106622 55106622 G A LILRA1 Missense_Mutation p.G139E 0.24 tolerated(0.11) benign(0.128) TCGA-ER-A19O-06 19 55396704 55396704 G A FCAR Missense_Mutation p.G43E 0.13 tolerated(1) benign(0.105) TCGA-ER-A19O-06 19 9085550 9085550 C T MUC16 Missense_Mutation p.E2089K 0.16 unknown(0) TCGA-ER-A19O-06 1 100620727 100620727 C T LRRC39 Missense_Mutation p.R231Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-ER-A19O-06 1 107691307 107691307 A G NTNG1 Missense_Mutation p.D31G 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19O-06 1 110741070 110741070 C T SLC6A17 3'UTR 0.20 TCGA-ER-A19O-06 1 142713854 142713854 C T RP11-417J8.6 RNA 0.15 TCGA-ER-A19O-06 1 156046333 156046333 G A MEX3A 3'UTR 0.23 TCGA-ER-A19O-06 1 156816380 156816380 T C INSRR Missense_Mutation p.T581A 0.25 tolerated(0.91) benign(0.026) TCGA-ER-A19O-06 1 157516930 157516930 C T FCRL5 Missense_Mutation p.G37E 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-ER-A19O-06 1 158261016 158261016 G A CD1C Missense_Mutation p.E52K 0.23 deleterious(0.03) benign(0.091) TCGA-ER-A19O-06 1 16921460 16921460 G A NBPF1 5'UTR 0.14 TCGA-ER-A19O-06 1 175355309 175355309 C T TNR Missense_Mutation p.G546R 0.20 tolerated(0.29) probably_damaging(0.969) TCGA-ER-A19O-06 1 180886115 180886115 C T KIAA1614 Silent p.S292S 0.19 TCGA-ER-A19O-06 1 181687295 181687295 G A CACNA1E Missense_Mutation p.D544N 0.36 deleterious(0) possibly_damaging(0.822) TCGA-ER-A19O-06 1 18809325 18809325 C T KLHDC7A Missense_Mutation p.P617L 0.10 deleterious(0) probably_damaging(0.996) TCGA-ER-A19O-06 1 196874358 196874358 G A CFHR4 Missense_Mutation p.G125E 0.19 tolerated(0.15) probably_damaging(0.998) TCGA-ER-A19O-06 1 220088945 220088945 G A SLC30A10 Missense_Mutation p.P435L 0.26 tolerated(0.25) benign(0.01) TCGA-ER-A19O-06 1 225140444 225140444 C T DNAH14 Nonsense_Mutation p.Q14* 0.32 TCGA-ER-A19O-06 1 235973240 235973240 A G LYST Missense_Mutation p.L293P 0.20 deleterious(0) possibly_damaging(0.776) TCGA-ER-A19O-06 1 241755337 241755337 G A KMO Missense_Mutation p.R448Q 0.15 tolerated_low_confidence(0.22) benign(0.007) TCGA-ER-A19O-06 1 248685664 248685664 G A OR2G6 Silent p.G239G 0.19 TCGA-ER-A19O-06 1 57422471 57422471 C T C8B Missense_Mutation p.R121Q 0.23 tolerated(0.13) benign(0.022) TCGA-ER-A19O-06 1 7723467 7723467 C T CAMTA1 Missense_Mutation p.S287L 0.23 deleterious(0) probably_damaging(0.99) TCGA-ER-A19O-06 1 79387394 79387394 C T ELTD1 Silent p.E387E 0.33 TCGA-ER-A19O-06 1 94654429 94654429 C T ARHGAP29 Missense_Mutation p.E549K 0.28 deleterious(0) possibly_damaging(0.654) TCGA-ER-A19O-06 20 47990865 47990865 A T KCNB1 Missense_Mutation p.I411N 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A19O-06 21 10996130 10996130 C T TPTE RNA 0.09 TCGA-ER-A19O-06 21 19666684 19666684 G A TMPRSS15 Missense_Mutation p.P797S 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A19O-06 21 27071073 27071073 G A JAM2 Missense_Mutation p.G160E 0.24 deleterious(0) possibly_damaging(0.844) TCGA-ER-A19O-06 22 18769227 18769227 C A GGT3P RNA 0.12 TCGA-ER-A19O-06 22 21147483 21147483 C T PI4KA Missense_Mutation p.V776M 0.16 deleterious(0.01) probably_damaging(0.921) TCGA-ER-A19O-06 22 23040753 23040753 C T IGLV2-23 Silent p.L67L 0.17 TCGA-ER-A19O-06 22 24143200 24143200 C T SMARCB1 Silent p.A144A 0.23 TCGA-ER-A19O-06 22 33265034 33265034 C T SYN3 Silent p.L180L 0.20 TCGA-ER-A19O-06 2 107032347 107032347 C T RGPD3 Missense_Mutation p.E1675K 0.26 deleterious_low_confidence(0.05) benign(0.001) TCGA-ER-A19O-06 2 107423285 107423285 C T ST6GAL2 Missense_Mutation p.G480E 0.13 probably_damaging(1) TCGA-ER-A19O-06 2 11696826 11696826 A G GREB1 Missense_Mutation p.N29S 0.17 tolerated(1) benign(0.007) TCGA-ER-A19O-06 2 170101310 170101310 G A LRP2 Missense_Mutation p.S1108F 0.26 possibly_damaging(0.786) TCGA-ER-A19O-06 2 171702018 171702018 G T GAD1 Missense_Mutation p.G252C 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A19O-06 2 173853540 173853540 C T RAPGEF4 Silent p.D449D 0.20 TCGA-ER-A19O-06 2 178634094 178634094 G A PDE11A Missense_Mutation p.S582L 0.24 deleterious(0) possibly_damaging(0.829) TCGA-ER-A19O-06 2 179437129 179437129 G A TTN Missense_Mutation p.S24577F 0.27 TCGA-ER-A19O-06 2 179485033 179485033 G A TTN Silent p.F15405F 0.18 TCGA-ER-A19O-06 2 179576684 179576684 G A TTN Silent p.F9291F 0.19 TCGA-ER-A19O-06 2 179594171 179594171 C T TTN Missense_Mutation p.E6238K 0.34 TCGA-ER-A19O-06 2 179974568 179974568 T C SESTD1 3'UTR 0.21 TCGA-ER-A19O-06 2 189873692 189873692 C T COL3A1 Missense_Mutation p.P1190S 0.20 unknown(0) TCGA-ER-A19O-06 2 206305171 206305171 C T PARD3B Missense_Mutation p.S878L 0.22 tolerated(0.05) benign(0.248) TCGA-ER-A19O-06 2 211541760 211541760 T C CPS1 Missense_Mutation p.V1441A 0.19 deleterious(0.04) benign(0.076) TCGA-ER-A19O-06 2 21230600 21230600 G A APOB Missense_Mutation p.T3047M 0.22 possibly_damaging(0.702) TCGA-ER-A19O-06 2 32475148 32475148 T A NLRC4 Missense_Mutation p.L595F 0.22 tolerated(0.13) probably_damaging(0.974) TCGA-ER-A19O-06 2 3691389 3691389 C T COLEC11 Missense_Mutation p.A180V 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A19O-06 2 71062730 71062730 G A CD207 Missense_Mutation p.P28S 0.17 tolerated(0.2) benign(0.275) TCGA-ER-A19O-06 3 1269596 1269596 C T CNTN6 Nonsense_Mutation p.Q93* 0.27 TCGA-ER-A19O-06 3 12875537 12875537 G A CAND2 3'UTR 0.22 TCGA-ER-A19O-06 3 129202332 129202332 C T IFT122 Missense_Mutation p.P604L 0.20 deleterious(0.02) benign(0.127) TCGA-ER-A19O-06 3 133167448 133167448 C T BFSP2 Silent p.L230L 0.16 TCGA-ER-A19O-06 3 151475389 151475389 G A AADACL2 3'UTR 0.12 TCGA-ER-A19O-06 3 158317946 158317946 C T MLF1 Silent p.F215F 0.21 TCGA-ER-A19O-06 3 168834173 168834173 G A MECOM Missense_Mutation p.P373L 0.22 deleterious(0) probably_damaging(0.967) TCGA-ER-A19O-06 3 170624851 170624851 C T EIF5A2 Missense_Mutation p.G66D 0.12 deleterious(0) benign(0.409) TCGA-ER-A19O-06 3 172607390 172607390 C T SPATA16 Missense_Mutation p.M560I 0.19 deleterious(0.04) benign(0.043) TCGA-ER-A19O-06 3 184953239 184953239 G A EHHADH Missense_Mutation p.R64C 0.26 deleterious(0.03) benign(0.021) TCGA-ER-A19O-06 3 37136389 37136389 C T LRRFIP2 Missense_Mutation p.R310Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19O-06 3 38646304 38646304 C T SCN5A Silent p.R478R 0.21 TCGA-ER-A19O-06 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.33 deleterious(0) possibly_damaging(0.844) TCGA-ER-A19O-06 3 52550415 52550415 G A STAB1 Silent p.G1396G 0.17 TCGA-ER-A19O-06 3 97887673 97887673 G A OR5H15 Missense_Mutation p.G44S 0.25 deleterious(0.03) possibly_damaging(0.45) TCGA-ER-A19O-06 3 9798815 9798815 C T OGG1 Intron 0.25 TCGA-ER-A19O-06 4 110791349 110791349 G A LRIT3 Missense_Mutation p.E482K 0.30 tolerated(0.1) benign(0.053) TCGA-ER-A19O-06 4 140432708 140432708 G A SETD7 3'UTR 0.32 TCGA-ER-A19O-06 4 145579946 145579946 C T HHIP Silent p.F159F 0.26 TCGA-ER-A19O-06 4 166914025 166914025 G A TLL1 Missense_Mutation p.R117K 0.19 tolerated(0.32) benign(0.002) TCGA-ER-A19O-06 4 169099096 169099096 T G ANXA10 Missense_Mutation p.M197R 0.26 tolerated(0.13) possibly_damaging(0.664) TCGA-ER-A19O-06 4 175564910 175564910 C T GLRA3 3'UTR 0.21 TCGA-ER-A19O-06 4 42122103 42122103 G A BEND4 Missense_Mutation p.P452L 0.28 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ER-A19O-06 4 81967122 81967122 C T BMP3 Silent p.L183L 0.22 TCGA-ER-A19O-06 5 112178816 112178816 C T APC Missense_Mutation p.P2509S 0.29 benign(0.052) TCGA-ER-A19O-06 5 140167763 140167763 G A PCDHA1 Missense_Mutation p.E630K 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.875) TCGA-ER-A19O-06 5 140264037 140264037 C T PCDHA13 Silent p.T728T 0.17 TCGA-ER-A19O-06 5 140553689 140553689 G A PCDHB7 Missense_Mutation p.D425N 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19O-06 5 140736378 140736378 T G PCDHGA4 Missense_Mutation p.S537R 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.636) TCGA-ER-A19O-06 5 140782574 140782574 C T PCDHGA9 Missense_Mutation p.L19F 0.30 tolerated_low_confidence(0.5) benign(0.006) TCGA-ER-A19O-06 5 147258341 147258341 C T SCGB3A2 5'UTR 0.22 TCGA-ER-A19O-06 5 157158487 157158487 G A THG1L Silent p.L13L 0.27 TCGA-ER-A19O-06 5 172750340 172750340 C T STC2 Missense_Mutation p.E130K 0.26 deleterious(0.03) possibly_damaging(0.895) TCGA-ER-A19O-06 5 174156265 174156265 C T MSX2 Silent p.F161F 0.17 TCGA-ER-A19O-06 5 176731688 176731688 C T PRELID1 Missense_Mutation p.S52F 0.29 deleterious(0.05) benign(0.272) TCGA-ER-A19O-06 5 31323026 31323026 G A CDH6 Missense_Mutation p.E662K 0.21 deleterious(0) probably_damaging(0.993) TCGA-ER-A19O-06 5 32355973 32355973 G C ZFR Missense_Mutation p.Q1040E 0.28 tolerated(0.53) unknown(0) TCGA-ER-A19O-06 5 37196077 37196077 G A C5orf42 Missense_Mutation p.P1232S 0.15 tolerated(0.09) probably_damaging(0.992) TCGA-ER-A19O-06 5 41055889 41055889 G A MROH2B Nonsense_Mutation p.R330* 0.22 TCGA-ER-A19O-06 5 50091242 50091242 T C PARP8 Silent p.S473S 0.26 TCGA-ER-A19O-06 5 79095423 79095423 C T CMYA5 Missense_Mutation p.S4065F 0.39 benign(0.082) TCGA-ER-A19O-06 5 89924433 89924433 G A GPR98 Silent p.A431A 0.38 TCGA-ER-A19O-06 5 90073776 90073776 C T GPR98 Silent p.F4194F 0.29 TCGA-ER-A19O-06 6 117631283 117631283 C T ROS1 Missense_Mutation p.S2132N 0.31 tolerated(0.06) benign(0.103) TCGA-ER-A19O-06 6 123369783 123369783 G A CLVS2 Missense_Mutation p.R194Q 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-ER-A19O-06 6 161022055 161022055 G A LPA Silent p.V1007V 0.41 TCGA-ER-A19O-06 6 169620354 169620354 C T THBS2 Silent p.L1150L 0.33 TCGA-ER-A19O-06 6 28365849 28365849 C T ZSCAN12 Missense_Mutation p.E112K 0.26 tolerated(0.28) benign(0.122) TCGA-ER-A19O-06 6 28554098 28554098 C T SCAND3 Missense_Mutation p.E133K 0.21 tolerated_low_confidence(0.09) benign(0.055) TCGA-ER-A19O-06 6 34004036 34004036 G A GRM4 Silent p.I617I 0.26 TCGA-ER-A19O-06 6 38879243 38879243 G A DNAH8 Splice_Site p.X3030_splice 0.30 TCGA-ER-A19O-06 6 43418701 43418701 C T DLK2 Missense_Mutation p.G243D 0.18 tolerated(0.15) benign(0.211) TCGA-ER-A19O-06 6 46657689 46657689 G T TDRD6 Missense_Mutation p.L608F 0.26 deleterious(0.02) possibly_damaging(0.873) TCGA-ER-A19O-06 6 619506 619506 G A EXOC2 Missense_Mutation p.H154Y 0.18 deleterious(0.03) benign(0.017) TCGA-ER-A19O-06 6 70966482 70966482 G A COL9A1 Missense_Mutation p.P498S 0.21 probably_damaging(0.97) TCGA-ER-A19O-06 6 7575659 7575659 C T DSP Silent p.F856F 0.19 TCGA-ER-A19O-06 6 75884849 75884849 C T COL12A1 Missense_Mutation p.G872E 0.20 benign(0.016) TCGA-ER-A19O-06 7 100245130 100245131 - G ACTL6B Frame_Shift_Ins p.N233Kfs*17 0.19 TCGA-ER-A19O-06 7 103162552 103162552 G A RELN Nonsense_Mutation p.Q2529* 0.55 TCGA-ER-A19O-06 7 132174134 132174134 C T PLXNA4 Missense_Mutation p.D430N 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19O-06 7 139661812 139661812 C T TBXAS1 Missense_Mutation p.S352F 0.15 deleterious(0.04) benign(0.111) TCGA-ER-A19O-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-ER-A19O-06 7 142749462 142749462 G A OR6V1 Missense_Mutation p.E9K 0.18 deleterious(0) possibly_damaging(0.481) TCGA-ER-A19O-06 7 20445781 20445781 C T ITGB8 Silent p.V670V 0.47 TCGA-ER-A19O-06 7 24690159 24690159 G A MPP6 Missense_Mutation p.G160E 0.37 deleterious(0) probably_damaging(0.994) TCGA-ER-A19O-06 7 37382254 37382254 C T ELMO1 Nonsense_Mutation p.W14* 0.33 TCGA-ER-A19O-06 7 86394322 86394322 G A GRM3 Intron 0.17 TCGA-ER-A19O-06 8 113323359 113323359 C T CSMD3 Missense_Mutation p.G2578E 0.20 deleterious(0) probably_damaging(0.992) TCGA-ER-A19O-06 8 118159286 118159286 T G SLC30A8 Missense_Mutation p.S55R 0.39 tolerated(0.39) benign(0.01) TCGA-ER-A19O-06 8 141542233 141542233 G A AGO2 Silent p.T830T 0.13 TCGA-ER-A19O-06 8 48641592 48641592 T C SPIDR Missense_Mutation p.C845R 0.21 deleterious(0) possibly_damaging(0.878) TCGA-ER-A19O-06 8 51621528 51621528 C T SNTG1 Missense_Mutation p.A425V 0.16 tolerated(0.29) benign(0.05) TCGA-ER-A19O-06 8 54142118 54142118 G A OPRK1 Silent p.I294I 0.29 TCGA-ER-A19O-06 9 100124121 100124121 C T CCDC180 Silent p.S1243S 0.16 TCGA-ER-A19O-06 9 101748013 101748013 G A COL15A1 Silent p.R89R 0.26 TCGA-ER-A19O-06 9 107288808 107288808 G A OR13C4 Missense_Mutation p.T228M 0.22 tolerated(0.14) benign(0) TCGA-ER-A19O-06 9 125273927 125273927 C G OR1J2 Missense_Mutation p.P283A 0.22 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-ER-A19O-06 9 141015994 141015994 G A CACNA1B Missense_Mutation p.R2188K 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-ER-A19O-06 9 21141622 21141622 G A IFNW1 5'UTR 0.38 TCGA-ER-A19O-06 9 79318448 79318448 G A PRUNE2 Missense_Mutation p.P2694L 0.35 tolerated(1) benign(0) TCGA-ER-A19O-06 X 100547822 100547822 G A TAF7L Missense_Mutation p.A71V 0.65 tolerated(0.35) benign(0.003) TCGA-ER-A19O-06 X 106769920 106769920 C T FRMPD3 Silent p.F67F 0.58 TCGA-ER-A19O-06 X 107841970 107841970 G A COL4A5 Silent p.G606G 0.70 TCGA-ER-A19O-06 X 135430935 135430935 C T GPR112 Silent p.S1690S 0.60 TCGA-ER-A19O-06 X 140995915 140995915 G A MAGEC1 Missense_Mutation p.D909N 0.67 deleterious(0.04) unknown(0) TCGA-ER-A19O-06 X 150869197 150869197 C T PRRG3 Missense_Mutation p.P130S 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19O-06 X 3002495 3002495 G A ARSF Silent p.G206G 0.70 TCGA-ER-A19O-06 X 69283200 69283200 G A OTUD6A Missense_Mutation p.E276K 0.82 tolerated(0.4) benign(0.011) TCGA-ER-A19O-06 X 72433604 72433604 T G NAP1L2 Missense_Mutation p.D242A 0.48 tolerated(0.06) possibly_damaging(0.538) TCGA-ER-A19O-06 X 78010772 78010772 C T LPAR4 Missense_Mutation p.R136C 0.62 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 10 101379872 101379872 G C SLC25A28 Missense_Mutation p.T74R 0.21 tolerated(0.1) probably_damaging(0.957) TCGA-ER-A19P-06 10 105824202 105824207 CCGCAG - COL17A1 Nonsense_Mutation p.S252_G254delins* 0.29 TCGA-ER-A19P-06 10 106849582 106849582 C A SORCS3 Silent p.R360R 0.16 TCGA-ER-A19P-06 10 115527231 115527231 C A PLEKHS1 Missense_Mutation p.H112N 0.11 tolerated(0.4) benign(0.021) TCGA-ER-A19P-06 10 115603995 115603995 C T DCLRE1A Missense_Mutation p.G796D 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 10 118466792 118466792 C A HSPA12A Silent p.T15T 0.16 TCGA-ER-A19P-06 10 125528043 125528043 C G CPXM2 Missense_Mutation p.G433A 0.11 tolerated(0.78) benign(0.022) TCGA-ER-A19P-06 10 126678261 126678261 C T CTBP2 Silent p.P928P 0.15 TCGA-ER-A19P-06 10 12867732 12867732 G A CAMK1D Intron 0.16 TCGA-ER-A19P-06 10 134144973 134144973 G T LRRC27 5'Flank 0.13 TCGA-ER-A19P-06 10 134649689 134649689 G C TTC40 Silent p.P2190P 0.11 TCGA-ER-A19P-06 10 15831278 15831282 CATCA - FAM188A Frame_Shift_Del p.V331Efs*10 0.12 TCGA-ER-A19P-06 10 20290736 20290736 C T PLXDC2 Missense_Mutation p.H49Y 0.16 tolerated_low_confidence(1) benign(0.013) TCGA-ER-A19P-06 10 29578079 29578079 G A LYZL1 Silent p.P11P 0.13 TCGA-ER-A19P-06 10 33017835 33017835 G A C10ORF68 Missense_Mutation p.E204K 0.11 tolerated(0.2) probably_damaging(0.953) TCGA-ER-A19P-06 10 33552579 33552579 G C NRP1 Missense_Mutation p.P218R 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 10 35343418 35343418 G A CUL2 Missense_Mutation p.L142F 0.16 tolerated(0.34) benign(0.347) TCGA-ER-A19P-06 10 35343419 35343419 G A CUL2 Silent p.D141D 0.16 TCGA-ER-A19P-06 10 45484746 45484746 G T RASSF4 Nonsense_Mutation p.G186* 0.12 TCGA-ER-A19P-06 10 45652511 45652511 C A RP11-445N18.7 RNA 0.19 TCGA-ER-A19P-06 10 50916708 50916708 G A C10orf53 3'UTR 0.18 TCGA-ER-A19P-06 10 52390485 52390485 G A RP11-50E11.3 RNA 0.18 TCGA-ER-A19P-06 10 5541140 5541140 G - CALML5 Frame_Shift_Del p.R88Afs*35 0.09 TCGA-ER-A19P-06 10 6002336 6002336 G A IL15RA Missense_Mutation p.P193S 0.19 tolerated(0.6) benign(0.163) TCGA-ER-A19P-06 10 6263649 6263649 C G PFKFB3 Missense_Mutation p.P342A 0.24 probably_damaging(0.992) TCGA-ER-A19P-06 10 69281626 69281626 C T CTNNA3 Missense_Mutation p.D185N 0.21 tolerated(0.89) possibly_damaging(0.822) TCGA-ER-A19P-06 10 70441237 70441237 C A TET1 Missense_Mutation p.Q1636K 0.13 tolerated(0.07) benign(0.04) TCGA-ER-A19P-06 10 7769728 7769728 G T ITIH2 Nonsense_Mutation p.G406* 0.14 TCGA-ER-A19P-06 10 82249069 82249069 G C TSPAN14 Missense_Mutation p.W27S 0.31 deleterious(0) probably_damaging(0.977) TCGA-ER-A19P-06 10 94333690 94333690 C - IDE Frame_Shift_Del p.E29Dfs*14 0.09 TCGA-ER-A19P-06 10 94366042 94366042 G T KIF11 Missense_Mutation p.R33L 0.05 deleterious(0.05) benign(0.03) TCGA-ER-A19P-06 10 94828409 94828412 CCAC - CYP26C1 Frame_Shift_Del p.H509Pfs*? 0.10 TCGA-ER-A19P-06 10 96748836 96748836 C T CYP2C9 3'UTR 0.17 TCGA-ER-A19P-06 10 97919603 97919603 C A ZNF518A RNA 0.09 TCGA-ER-A19P-06 10 99133490 99133491 - CTTGTGCAGAACCCAGGCAGGAGTGTCCACATCTGT RRP12 In_Frame_Ins p.W623delinsYRCGHSCLGSAQG 0.10 TCGA-ER-A19P-06 10 99161115 99161115 C T RRP12 5'Flank 0.22 TCGA-ER-A19P-06 11 101918555 101918555 G T C11orf70 Silent p.L40L 0.11 TCGA-ER-A19P-06 11 102710972 102710972 C A MMP3 Missense_Mutation p.D268Y 0.12 deleterious(0.04) benign(0) TCGA-ER-A19P-06 11 102988372 102988372 G C DYNC2H1 Missense_Mutation p.G260A 0.09 benign(0.02) TCGA-ER-A19P-06 11 10673766 10673766 C A MRVI1 Intron 0.28 TCGA-ER-A19P-06 11 113802502 113802502 C T HTR3B Missense_Mutation p.S94F 0.16 tolerated(0.12) possibly_damaging(0.622) TCGA-ER-A19P-06 11 119001505 119001505 C T HINFP Silent p.R84R 0.09 TCGA-ER-A19P-06 11 122955376 122955376 C T CLMP Missense_Mutation p.E78K 0.16 tolerated(0.49) possibly_damaging(0.699) TCGA-ER-A19P-06 11 124501992 124501992 C T TBRG1 Missense_Mutation p.S365F 0.18 deleterious_low_confidence(0.01) benign(0.332) TCGA-ER-A19P-06 11 134153646 134153646 C - GLB1L3 Frame_Shift_Del p.R183Gfs*4 0.11 TCGA-ER-A19P-06 11 1467092 1467092 C A BRSK2 Missense_Mutation p.P440Q 0.15 deleterious(0) probably_damaging(0.991) TCGA-ER-A19P-06 11 18231828 18231828 T A RP11-113D6.10 3'UTR 0.11 TCGA-ER-A19P-06 11 3124503 3124503 C G OSBPL5 Missense_Mutation p.R431P 0.25 deleterious(0.02) probably_damaging(0.926) TCGA-ER-A19P-06 11 34501758 34501758 G T ELF5 3'UTR 0.10 TCGA-ER-A19P-06 11 407845 407845 C A SIGIRR Missense_Mutation p.Q151H 0.08 deleterious(0.02) benign(0.021) TCGA-ER-A19P-06 11 430390 430390 C - ANO9 Frame_Shift_Del p.E185Kfs*22 0.11 TCGA-ER-A19P-06 11 46563784 46563784 C G AMBRA1 Missense_Mutation p.E505Q 0.08 tolerated_low_confidence(0.25) probably_damaging(0.983) TCGA-ER-A19P-06 11 47281451 47281451 G A NR1H3 Silent p.G51G 0.12 TCGA-ER-A19P-06 11 49831700 49831700 C T RP11-707M1.1 RNA 0.10 TCGA-ER-A19P-06 11 5373043 5373043 C T OR51B6 Silent p.I102I 0.15 TCGA-ER-A19P-06 11 5528791 5528791 G A UBQLN3 3'UTR 0.08 TCGA-ER-A19P-06 11 55371689 55371689 C T OR4C11 Missense_Mutation p.G54E 0.18 tolerated(0.06) benign(0.078) TCGA-ER-A19P-06 11 55607046 55607046 C T OR5D16 Silent p.V273V 0.08 TCGA-ER-A19P-06 11 56020415 56020415 C T OR5T3 Missense_Mutation p.S247F 0.10 deleterious(0) possibly_damaging(0.873) TCGA-ER-A19P-06 11 5719768 5719768 T C TRIM22 Missense_Mutation p.M248T 0.15 tolerated(0.14) benign(0.002) TCGA-ER-A19P-06 11 5969438 5969438 C T OR56A3 Missense_Mutation p.P288S 0.10 deleterious(0.01) possibly_damaging(0.702) TCGA-ER-A19P-06 11 60637857 60637857 C A ZP1 Nonsense_Mutation p.C245* 0.10 TCGA-ER-A19P-06 11 60899708 60899708 T G VPS37C Missense_Mutation p.T218P 0.29 tolerated(0.07) possibly_damaging(0.827) TCGA-ER-A19P-06 11 61644404 61644404 C A FADS3 Missense_Mutation p.R306L 0.29 deleterious(0.02) possibly_damaging(0.767) TCGA-ER-A19P-06 11 620134 620134 G T CDHR5 Missense_Mutation p.P304Q 0.19 tolerated(0.16) benign(0.183) TCGA-ER-A19P-06 11 62186531 62186531 G A SCGB1A1 5'UTR 0.20 TCGA-ER-A19P-06 11 62948217 62948217 C T SLC22A25 Missense_Mutation p.E329K 0.12 tolerated(0.14) benign(0.135) TCGA-ER-A19P-06 11 64128706 64128706 C A RPS6KA4 Missense_Mutation p.T188K 0.11 tolerated(0.68) benign(0.175) TCGA-ER-A19P-06 11 6458755 6458755 G A HPX Silent p.F206F 0.11 TCGA-ER-A19P-06 11 65618233 65618233 G C SNX32 Silent p.R170R 0.09 TCGA-ER-A19P-06 11 6588808 6588808 G A DNHD1 Silent p.V4023V 0.14 TCGA-ER-A19P-06 11 66102643 66102643 C - RIN1 Frame_Shift_Del p.S210Pfs*24 0.37 TCGA-ER-A19P-06 11 67559927 67559927 C T FAM86C2P RNA 0.14 TCGA-ER-A19P-06 11 68704052 68704052 C T IGHMBP2 Silent p.L702L 0.14 TCGA-ER-A19P-06 11 6891192 6891192 G T OR10A2 Silent p.L69L 0.11 TCGA-ER-A19P-06 11 74982761 74982761 C G ARRB1 Missense_Mutation p.G336R 0.33 deleterious(0.01) benign(0.001) TCGA-ER-A19P-06 11 77823718 77823718 C A ALG8 Missense_Mutation p.L292F 0.08 tolerated(0.25) benign(0.003) TCGA-ER-A19P-06 11 7847334 7847334 G A OR5P3 Silent p.F62F 0.10 TCGA-ER-A19P-06 11 89420530 89420530 G A FOLH1B RNA 0.11 TCGA-ER-A19P-06 11 93212381 93212381 G A SMCO4 5'UTR 0.10 TCGA-ER-A19P-06 12 101550986 101550986 C T SLC5A8 3'UTR 0.10 TCGA-ER-A19P-06 12 101799682 101799682 C A ARL1 Missense_Mutation p.A28S 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-ER-A19P-06 12 102074214 102074214 C T MYBPC1 Missense_Mutation p.R1107C 0.09 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 12 107114555 107114555 G A RFX4 Missense_Mutation p.G427R 0.17 tolerated(0.52) probably_damaging(0.935) TCGA-ER-A19P-06 12 112668609 112668609 G A HECTD4 Missense_Mutation p.P1927L 0.11 benign(0.364) TCGA-ER-A19P-06 12 112688906 112688906 G T HECTD4 Silent p.P1049P 0.11 TCGA-ER-A19P-06 12 113424883 113424883 C T OAS2 Missense_Mutation p.S73F 0.12 deleterious(0.02) probably_damaging(0.933) TCGA-ER-A19P-06 12 113424884 113424884 C T OAS2 Silent p.S73S 0.12 TCGA-ER-A19P-06 12 113705718 113705718 T - TPCN1 Frame_Shift_Del p.L234Rfs*39 0.23 TCGA-ER-A19P-06 12 120789176 120789176 G T MSI1 Missense_Mutation p.P254Q 0.20 tolerated(0.19) possibly_damaging(0.694) TCGA-ER-A19P-06 12 121416718 121416718 C T HNF1A Silent p.S49S 0.06 TCGA-ER-A19P-06 12 123022896 123022896 G T KNTC1 Silent p.V87V 0.12 TCGA-ER-A19P-06 12 123187411 123187411 G A HCAR2 Silent p.S140S 0.24 TCGA-ER-A19P-06 12 123875268 123875268 C A SETD8 Nonsense_Mutation p.S75* 0.09 TCGA-ER-A19P-06 12 124256171 124256171 G T DNAH10 Nonsense_Mutation p.E47* 0.10 TCGA-ER-A19P-06 12 124303543 124303543 G A DNAH10 Nonsense_Mutation p.W1158* 0.08 TCGA-ER-A19P-06 12 125591750 125591750 C A AACS Missense_Mutation p.P284Q 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 12 132393304 132393304 C T ULK1 Silent p.I144I 0.27 TCGA-ER-A19P-06 12 132490681 132490681 G C EP400 Missense_Mutation p.R987T 0.09 unknown(0) TCGA-ER-A19P-06 12 14952596 14952596 G T WBP11 Silent p.R55R 0.17 TCGA-ER-A19P-06 12 21032535 21032535 C T SLCO1B3 Missense_Mutation p.S434L 0.08 tolerated(0.31) benign(0.081) TCGA-ER-A19P-06 12 21962879 21962879 C T ABCC9 Missense_Mutation p.D1408N 0.13 deleterious(0.04) probably_damaging(1) TCGA-ER-A19P-06 12 29644125 29644125 C T OVCH1 Missense_Mutation p.G152E 0.10 deleterious(0.01) probably_damaging(1) TCGA-ER-A19P-06 12 32949100 32949100 C T PKP2 Missense_Mutation p.R811H 0.13 deleterious(0.03) possibly_damaging(0.901) TCGA-ER-A19P-06 12 40076498 40076498 G A C12orf40 Missense_Mutation p.D258N 0.15 tolerated(0.07) possibly_damaging(0.904) TCGA-ER-A19P-06 12 48174697 48174697 C G SLC48A1 3'UTR 0.11 TCGA-ER-A19P-06 12 49162447 49162447 C T ADCY6 Missense_Mutation p.C1145Y 0.10 tolerated(0.11) possibly_damaging(0.548) TCGA-ER-A19P-06 12 49690009 49690010 - GCGGAGCACAACCTCGTGCTCTTCCGATCT PRPH In_Frame_Ins p.V198_L199insAEHNLVLFRS 0.16 TCGA-ER-A19P-06 12 50561000 50561000 C T CERS5 Silent p.V27V 0.12 TCGA-ER-A19P-06 12 51080390 51080390 C A DIP2B Silent p.S492S 0.10 TCGA-ER-A19P-06 12 51640568 51640568 G C SMAGP Missense_Mutation p.P28A 0.25 tolerated(0.4) probably_damaging(0.998) TCGA-ER-A19P-06 12 52094982 52094982 C A SCN8A Missense_Mutation p.S328Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-ER-A19P-06 12 52979706 52979706 G A KRT72 3'UTR 0.11 TCGA-ER-A19P-06 12 53444030 53444030 C G TENC1 Intron 0.12 TCGA-ER-A19P-06 12 55688833 55688833 G A OR6C6 Missense_Mutation p.R62C 0.11 deleterious_low_confidence(0) benign(0.046) TCGA-ER-A19P-06 12 56151268 56151268 G C SARNP 3'UTR 0.11 TCGA-ER-A19P-06 12 6090951 6090951 C T VWF Splice_Site p.X2429_splice 0.10 TCGA-ER-A19P-06 12 6090952 6090952 C T VWF Silent p.K2429K 0.11 TCGA-ER-A19P-06 12 63974482 63974482 C T DPY19L2 Silent p.Q620Q 0.11 TCGA-ER-A19P-06 12 68647151 68647151 G T IL22 Silent p.L26L 0.11 TCGA-ER-A19P-06 12 69764527 69764527 C A YEATS4 Silent p.T125T 0.09 TCGA-ER-A19P-06 12 70956838 70956838 G A PTPRB Silent p.H1318H 0.13 TCGA-ER-A19P-06 12 7289700 7289700 C G CLSTN3 Missense_Mutation p.Q402E 0.09 deleterious(0.01) benign(0.02) TCGA-ER-A19P-06 12 80660321 80660321 G T OTOGL Missense_Mutation p.S763I 0.13 deleterious(0.01) benign(0.004) TCGA-ER-A19P-06 12 81110921 81110921 G A MYF5 Missense_Mutation p.E27K 0.15 tolerated(0.37) benign(0.226) TCGA-ER-A19P-06 12 81205358 81205358 C T LIN7A Missense_Mutation p.M196I 0.15 deleterious(0.02) benign(0.107) TCGA-ER-A19P-06 12 89853418 89853418 G C POC1B Silent p.T370T 0.11 TCGA-ER-A19P-06 13 101315391 101315391 G A TMTC4 Missense_Mutation p.H127Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-ER-A19P-06 13 111156334 111156334 G T COL4A2 Nonsense_Mutation p.E1427* 0.16 TCGA-ER-A19P-06 13 25356080 25356080 C A RNF17 Silent p.S203S 0.09 TCGA-ER-A19P-06 13 31233132 31233132 C G USPL1 Missense_Mutation p.A973G 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 13 32527522 32527522 C G EEF1DP3 RNA 0.08 TCGA-ER-A19P-06 13 40293484 40293484 C G COG6 Missense_Mutation p.R466G 0.08 deleterious(0.02) possibly_damaging(0.899) TCGA-ER-A19P-06 13 58207007 58207007 C T PCDH17 Silent p.F109F 0.11 TCGA-ER-A19P-06 13 99373814 99373814 G A SLC15A1 Missense_Mutation p.S164F 0.20 deleterious(0) probably_damaging(0.998) TCGA-ER-A19P-06 14 100192594 100192594 G A CYP46A1 Splice_Site p.X444_splice 0.14 TCGA-ER-A19P-06 14 101491905 101491905 C T MIR1197 RNA 0.12 TCGA-ER-A19P-06 14 102461081 102461081 C A DYNC1H1 Silent p.L1076L 0.09 TCGA-ER-A19P-06 14 106518851 106518851 C T IGHV3-7 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.537) TCGA-ER-A19P-06 14 106610601 106610601 C A IGHV3-15 Silent p.L23L 0.09 TCGA-ER-A19P-06 14 106641665 106641665 G A IGHV1-18 Silent p.L83L 0.11 TCGA-ER-A19P-06 14 20389635 20389635 G A OR4K5 Silent p.R290R 0.09 TCGA-ER-A19P-06 14 24523675 24523675 C A LRRC16B Missense_Mutation p.T106K 0.08 deleterious(0) benign(0.346) TCGA-ER-A19P-06 14 24780893 24780893 C A LTB4R2 Silent p.G341G 0.11 TCGA-ER-A19P-06 14 24883868 24883868 C A NYNRIN Silent p.V971V 0.11 TCGA-ER-A19P-06 14 25078864 25078864 C T GZMH 5'UTR 0.11 TCGA-ER-A19P-06 14 31638563 31638563 G A HECTD1 Missense_Mutation p.P482S 0.13 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 14 35270308 35270308 T C BAZ1A Missense_Mutation p.K318R 0.10 tolerated(0.32) benign(0.292) TCGA-ER-A19P-06 14 36988461 36988461 G T NKX2-1 Silent p.L64L 0.12 TCGA-ER-A19P-06 14 38679025 38679025 G A SSTR1 Missense_Mutation p.S144N 0.20 deleterious(0) probably_damaging(0.95) TCGA-ER-A19P-06 14 50110348 50110348 C T POLE2 3'UTR 0.10 TCGA-ER-A19P-06 14 50886719 50886719 G T MAP4K5 3'UTR 0.17 TCGA-ER-A19P-06 14 52164886 52164886 G T FRMD6 Silent p.L42L 0.11 TCGA-ER-A19P-06 14 52906028 52906028 C A TXNDC16 Silent p.L696L 0.10 TCGA-ER-A19P-06 14 53184854 53184854 C T PSMC6 Silent p.F209F 0.12 TCGA-ER-A19P-06 14 58038677 58038677 G T SLC35F4 Missense_Mutation p.H326N 0.16 tolerated(0.07) benign(0.207) TCGA-ER-A19P-06 14 60933729 60933729 C - C14orf39 Frame_Shift_Del p.N268Ifs*17 0.09 TCGA-ER-A19P-06 14 63269219 63269219 A C KCNH5 Silent p.A550A 0.10 TCGA-ER-A19P-06 14 64727206 64727206 C - ESR2 Frame_Shift_Del p.E305Sfs*5 0.13 TCGA-ER-A19P-06 14 70517735 70517735 G C SLC8A3 Silent p.T707T 0.12 TCGA-ER-A19P-06 14 70713576 70713576 G A ADAM21P1 RNA 0.10 TCGA-ER-A19P-06 14 70713577 70713577 G A ADAM21P1 RNA 0.10 TCGA-ER-A19P-06 14 74364869 74364869 A G ZNF410 Missense_Mutation p.I179V 0.08 tolerated(1) benign(0.065) TCGA-ER-A19P-06 14 74524361 74524361 C A ALDH6A1 3'UTR 0.13 TCGA-ER-A19P-06 14 75373322 75373322 G T RPS6KL1 3'UTR 0.14 TCGA-ER-A19P-06 14 77873143 77873143 C G NOXRED1 Missense_Mutation p.W202C 0.15 deleterious(0.02) probably_damaging(1) TCGA-ER-A19P-06 14 92249550 92249550 C A TC2N Missense_Mutation p.W456L 0.09 tolerated(0.59) benign(0.013) TCGA-ER-A19P-06 14 95109995 95109995 C G SERPINA13P RNA 0.07 TCGA-ER-A19P-06 15 22383003 22383003 C T OR4N4 Silent p.F177F 0.06 TCGA-ER-A19P-06 15 23932383 23932383 G A NDN 5'UTR 0.11 TCGA-ER-A19P-06 15 26792910 26792910 T A GABRB3 3'UTR 0.11 TCGA-ER-A19P-06 15 27772669 27772670 - GTGACCGCCATGGACCTTTTT GABRG3 Nonsense_Mutation p.L318_F319insL*PPWTF 0.08 TCGA-ER-A19P-06 15 31851386 31851387 - T OTUD7A Frame_Shift_Ins p.R113Afs*24 0.23 TCGA-ER-A19P-06 15 33023301 33023301 C T GREM1 Missense_Mutation p.S137F 0.19 deleterious(0.01) possibly_damaging(0.61) TCGA-ER-A19P-06 15 34635361 34635361 C T NOP10 5'UTR 0.14 TCGA-ER-A19P-06 15 34646877 34646877 C T NUTM1 Missense_Mutation p.P408S 0.08 tolerated(0.06) possibly_damaging(0.461) TCGA-ER-A19P-06 15 41821679 41821679 C G RPAP1 Missense_Mutation p.E383Q 0.20 deleterious(0.04) probably_damaging(0.993) TCGA-ER-A19P-06 15 42117539 42117539 G T MAPKBP1 Missense_Mutation p.G1484W 0.09 deleterious(0) probably_damaging(0.977) TCGA-ER-A19P-06 15 42167107 42167107 C A SPTBN5 Missense_Mutation p.A1479S 0.12 benign(0.052) TCGA-ER-A19P-06 15 42744097 42744097 G A ZNF106 Nonsense_Mutation p.Q102* 0.07 TCGA-ER-A19P-06 15 44053650 44053650 G A PDIA3 Silent p.Q131Q 0.19 TCGA-ER-A19P-06 15 44127344 44127344 C A WDR76 Missense_Mutation p.S183Y 0.08 tolerated(1) benign(0.284) TCGA-ER-A19P-06 15 45413355 45413355 G T DUOXA1 Missense_Mutation p.F90L 0.10 deleterious(0.03) possibly_damaging(0.698) TCGA-ER-A19P-06 15 45426393 45426393 C T DUOX1 Nonsense_Mutation p.Q65* 0.13 TCGA-ER-A19P-06 15 49420924 49420924 A G COPS2 Silent p.L395L 0.14 TCGA-ER-A19P-06 15 49860534 49860534 C T FAM227B Missense_Mutation p.E219K 0.12 tolerated(0.24) benign(0.01) TCGA-ER-A19P-06 15 53998248 53998248 C T WDR72 Missense_Mutation p.M326I 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A19P-06 15 54306001 54306001 G A UNC13C Missense_Mutation p.E301K 0.17 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-ER-A19P-06 15 55613524 55613524 C A PIGB Missense_Mutation p.P118H 0.10 deleterious(0) probably_damaging(0.991) TCGA-ER-A19P-06 15 55838457 55838457 G A PYGO1 Missense_Mutation p.P342S 0.10 tolerated(0.11) probably_damaging(0.995) TCGA-ER-A19P-06 15 59323219 59323219 C T RNF111 Silent p.H66H 0.12 TCGA-ER-A19P-06 15 64455189 64455189 C A PPIB 5'UTR 0.10 TCGA-ER-A19P-06 15 65703658 65703658 C G IGDCC4 Missense_Mutation p.G41R 0.08 deleterious(0) probably_damaging(0.997) TCGA-ER-A19P-06 15 66010237 66010237 G A DENND4A Silent p.I562I 0.10 TCGA-ER-A19P-06 15 68099272 68099272 G A MAP2K5 3'UTR 0.29 TCGA-ER-A19P-06 15 68657130 68657132 ACC CT ITGA11 Frame_Shift_Del p.V91Afs*99 0.12 TCGA-ER-A19P-06 15 73409065 73409065 G A NEO1 Silent p.P105P 0.07 TCGA-ER-A19P-06 15 73615518 73615518 G T HCN4 Silent p.P972P 0.19 TCGA-ER-A19P-06 15 75652945 75652945 G A MAN2C1 Silent p.F515F 0.18 TCGA-ER-A19P-06 15 78317735 78317735 C A TBC1D2B Missense_Mutation p.G318C 0.08 tolerated(0.07) possibly_damaging(0.503) TCGA-ER-A19P-06 15 89416118 89416118 G T ACAN Nonsense_Mutation p.E2399* 0.08 TCGA-ER-A19P-06 15 93162676 93162676 G A FAM174B 3'UTR 0.09 TCGA-ER-A19P-06 16 11769905 11769905 C A SNN 5'UTR 0.15 TCGA-ER-A19P-06 16 11830038 11830038 G A TXNDC11 Silent p.S102S 0.12 TCGA-ER-A19P-06 16 15501864 15501864 C T MPV17L Silent p.T162T 0.10 TCGA-ER-A19P-06 16 1570774 1570774 G T IFT140 Missense_Mutation p.N1163K 0.12 deleterious(0) possibly_damaging(0.843) TCGA-ER-A19P-06 16 17211812 17211812 C T XYLT1 Missense_Mutation p.E750K 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 16 1823473 1823473 C T EME2 Missense_Mutation p.T82I 0.27 deleterious(0) benign(0.088) TCGA-ER-A19P-06 16 20563466 20563466 C T ACSM2B Silent p.K298K 0.12 TCGA-ER-A19P-06 16 20570715 20570715 C T ACSM2B Missense_Mutation p.E78K 0.18 deleterious(0) possibly_damaging(0.879) TCGA-ER-A19P-06 16 21666869 21666869 C T METTL9 3'UTR 0.32 TCGA-ER-A19P-06 16 2222336 2222336 C T TRAF7 Missense_Mutation p.P207L 0.12 tolerated(0.08) benign(0.347) TCGA-ER-A19P-06 16 2230323 2230323 C T CASKIN1 Missense_Mutation p.G1016R 0.30 probably_damaging(1) TCGA-ER-A19P-06 16 24192138 24192138 C T PRKCB Silent p.L474L 0.11 TCGA-ER-A19P-06 16 2489766 2489766 G T CCNF Missense_Mutation p.R239L 0.11 deleterious(0.01) possibly_damaging(0.898) TCGA-ER-A19P-06 16 2827033 2827033 G T TCEB2 Silent p.G33G 0.12 TCGA-ER-A19P-06 16 28330377 28330377 G A SBK1 Silent p.R96R 0.17 TCGA-ER-A19P-06 16 28620093 28620093 C G SULT1A1 Silent p.L28L 0.06 TCGA-ER-A19P-06 16 30764585 30764585 C A PHKG2 Missense_Mutation p.T120K 0.09 deleterious(0) possibly_damaging(0.676) TCGA-ER-A19P-06 16 31374667 31374667 G A ITGAX Missense_Mutation p.G561E 0.08 tolerated(0.35) benign(0.009) TCGA-ER-A19P-06 16 460730 460730 G C DECR2 Missense_Mutation p.G168R 0.24 tolerated(0.11) possibly_damaging(0.515) TCGA-ER-A19P-06 16 50655591 50655591 C A NKD1 Missense_Mutation p.P113Q 0.12 tolerated(0.33) benign(0.003) TCGA-ER-A19P-06 16 53243605 53243605 C A CHD9 Missense_Mutation p.P555H 0.08 probably_damaging(1) TCGA-ER-A19P-06 16 57115055 57115055 C G NLRC5 Silent p.A1789A 0.40 TCGA-ER-A19P-06 16 57181538 57181538 A G CPNE2 Missense_Mutation p.N539D 0.09 tolerated(0.23) benign(0.004) TCGA-ER-A19P-06 16 57921871 57921871 C T CNGB1 Missense_Mutation p.G1117E 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-ER-A19P-06 16 67709429 67709429 G C GFOD2 Missense_Mutation p.R263G 0.07 deleterious(0) benign(0.326) TCGA-ER-A19P-06 16 70708262 70708262 C A MTSS1L Missense_Mutation p.D334Y 0.12 deleterious(0) possibly_damaging(0.905) TCGA-ER-A19P-06 16 76556047 76556047 G T CNTNAP4 Missense_Mutation p.R810M 0.08 deleterious(0) probably_damaging(0.998) TCGA-ER-A19P-06 16 7680656 7680656 C - RBFOX1 Frame_Shift_Del p.S265Vfs*54 0.14 TCGA-ER-A19P-06 16 8873380 8873380 C T ABAT Silent p.T438T 0.12 TCGA-ER-A19P-06 16 88876845 88876845 G T APRT Missense_Mutation p.L103M 0.14 deleterious(0) probably_damaging(0.931) TCGA-ER-A19P-06 16 89977068 89977068 G C TCF25 Missense_Mutation p.M623I 0.10 tolerated(0.21) benign(0) TCGA-ER-A19P-06 17 10406562 10406562 C T MYH1 Missense_Mutation p.A899T 0.05 tolerated(0.23) benign(0.003) TCGA-ER-A19P-06 17 14140102 14140102 C T CDRT15 Missense_Mutation p.G17R 0.12 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ER-A19P-06 17 19648449 19648449 T C ALDH3A1 5'UTR 0.11 TCGA-ER-A19P-06 17 26821471 26821471 A T SLC13A2 Missense_Mutation p.M466L 0.11 tolerated(0.23) benign(0.06) TCGA-ER-A19P-06 17 26962453 26962453 G A KIAA0100 Missense_Mutation p.R718C 0.10 tolerated(0.07) benign(0) TCGA-ER-A19P-06 17 27042228 27042228 G T RAB34 Silent p.S223S 0.10 TCGA-ER-A19P-06 17 27413590 27413590 C A MYO18A Missense_Mutation p.M1906I 0.19 tolerated(0.18) benign(0.206) TCGA-ER-A19P-06 17 3195183 3195183 G A OR3A1 Missense_Mutation p.R232C 0.17 deleterious(0.04) benign(0.103) TCGA-ER-A19P-06 17 32953994 32953994 G - TMEM132E Frame_Shift_Del p.E217Kfs*28 0.10 TCGA-ER-A19P-06 17 33586577 33586577 C T SLFN5 Missense_Mutation p.R290C 0.13 tolerated(0.09) benign(0.014) TCGA-ER-A19P-06 17 34074128 34074128 C T GAS2L2 Missense_Mutation p.R331Q 0.13 tolerated(0.06) benign(0.075) TCGA-ER-A19P-06 17 38928300 38928300 G C KRT26 Silent p.S22S 0.06 TCGA-ER-A19P-06 17 42169122 42169122 G T HDAC5 Silent p.P371P 0.09 TCGA-ER-A19P-06 17 43005666 43005666 A T KIF18B Silent p.P668P 0.14 TCGA-ER-A19P-06 17 4577907 4577907 G C PELP1 Missense_Mutation p.P494A 0.08 probably_damaging(0.997) TCGA-ER-A19P-06 17 4620555 4620555 C A ARRB2 Missense_Mutation p.P155Q 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19P-06 17 47247027 47247027 C T B4GALNT2 Silent p.L546L 0.16 TCGA-ER-A19P-06 17 47656118 47656118 C T NXPH3 Missense_Mutation p.P72L 0.07 tolerated(0.54) benign(0.354) TCGA-ER-A19P-06 17 66548076 66548076 C G FAM20A Silent p.G219G 0.17 TCGA-ER-A19P-06 17 70117529 70117529 G T SOX9 5'UTR 0.13 TCGA-ER-A19P-06 17 7011859 7011859 C G ASGR2 Missense_Mutation p.E92Q 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-ER-A19P-06 17 71387647 71387647 G C SDK2 Missense_Mutation p.P1310R 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 17 73915951 73915951 G A FBF1 Missense_Mutation p.R631C 0.08 deleterious(0) possibly_damaging(0.819) TCGA-ER-A19P-06 17 74090658 74090658 G A EXOC7 Silent p.F215F 0.09 TCGA-ER-A19P-06 17 76571089 76571089 G C DNAH17 Silent p.S17S 0.09 TCGA-ER-A19P-06 17 80369386 80369386 C A OGFOD3 Missense_Mutation p.G109C 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 17 80541916 80541916 G C FOXK2 Silent p.A377A 0.11 TCGA-ER-A19P-06 18 20837340 20837340 C G CABLES1 3'UTR 0.08 TCGA-ER-A19P-06 18 21119373 21119373 G A NPC1 Nonsense_Mutation p.Q953* 0.11 TCGA-ER-A19P-06 18 21124311 21124313 GTA - NPC1 In_Frame_Del p.Y709del 0.13 TCGA-ER-A19P-06 18 28662900 28662900 G A DSC2 Missense_Mutation p.R357C 0.11 deleterious(0) possibly_damaging(0.88) TCGA-ER-A19P-06 18 29049090 29049090 C T DSG3 Missense_Mutation p.P559S 0.22 tolerated(0.42) benign(0.077) TCGA-ER-A19P-06 18 29340133 29340133 C T SLC25A52 Silent p.L174L 0.13 TCGA-ER-A19P-06 18 31324745 31324745 G A ASXL3 Missense_Mutation p.E1645K 0.11 probably_damaging(0.997) TCGA-ER-A19P-06 18 34174761 34174761 G T FHOD3 Silent p.V206V 0.12 TCGA-ER-A19P-06 18 56204264 56204264 G A ALPK2 Missense_Mutation p.P1052L 0.20 tolerated(0.07) benign(0.21) TCGA-ER-A19P-06 18 56936241 56936241 G T RAX Missense_Mutation p.L346I 0.17 tolerated(0.37) benign(0.014) TCGA-ER-A19P-06 18 6887173 6887173 G T ARHGAP28 Missense_Mutation p.V332L 0.09 tolerated(0.7) benign(0.004) TCGA-ER-A19P-06 18 72247448 72247448 C G CNDP1 Missense_Mutation p.P417R 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 19 10249209 10249209 G A DNMT1 Missense_Mutation p.P1341S 0.16 deleterious(0) possibly_damaging(0.675) TCGA-ER-A19P-06 19 1047201 1047201 T C ABCA7 Missense_Mutation p.F631L 0.15 deleterious(0.01) benign(0.252) TCGA-ER-A19P-06 19 12792465 12792465 C - DHPS Frame_Shift_Del p.G39Vfs*2 0.12 TCGA-ER-A19P-06 19 14887614 14887614 T G EMR2 5'UTR 0.12 TCGA-ER-A19P-06 19 1623950 1623950 C T TCF3 Silent p.S183S 0.11 TCGA-ER-A19P-06 19 17039886 17039886 C G CPAMD8 Missense_Mutation p.G1051R 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 19 18054113 18054113 C G CCDC124 Missense_Mutation p.N131K 0.17 deleterious(0) probably_damaging(0.963) TCGA-ER-A19P-06 19 18191769 18191769 G A IL12RB1 Silent p.A94A 0.07 TCGA-ER-A19P-06 19 21719141 21719141 C T ZNF429 Nonsense_Mutation p.Q96* 0.14 TCGA-ER-A19P-06 19 24310185 24310185 C T ZNF254 Silent p.P461P 0.12 TCGA-ER-A19P-06 19 24310186 24310186 T C ZNF254 Missense_Mutation p.Y462H 0.13 deleterious(0.01) benign(0.182) TCGA-ER-A19P-06 19 36048690 36048690 G C ATP4A Silent p.G520G 0.21 TCGA-ER-A19P-06 19 3738585 3738585 G A TJP3 Silent p.R448R 0.12 TCGA-ER-A19P-06 19 39008294 39008294 G T RYR1 Silent p.L3327L 0.08 TCGA-ER-A19P-06 19 40900148 40900148 G A PRX Missense_Mutation p.R1371W 0.13 deleterious(0.01) possibly_damaging(0.835) TCGA-ER-A19P-06 19 41128898 41128898 G T LTBP4 Silent p.A1242A 0.15 TCGA-ER-A19P-06 19 42867352 42867352 C G MEGF8 Missense_Mutation p.L2004V 0.16 deleterious(0) probably_damaging(0.982) TCGA-ER-A19P-06 19 45206701 45206701 C T CEACAM16 Silent p.V40V 0.08 TCGA-ER-A19P-06 19 46021212 46021212 G C VASP Missense_Mutation p.R68P 0.15 deleterious(0) unknown(0) TCGA-ER-A19P-06 19 463919 463919 C T ODF3L2 Silent p.S265S 0.10 TCGA-ER-A19P-06 19 47876076 47876076 C G DHX34 Missense_Mutation p.R620G 0.13 deleterious(0.01) probably_damaging(1) TCGA-ER-A19P-06 19 47876173 47876173 G C DHX34 Missense_Mutation p.W652S 0.09 deleterious(0) probably_damaging(0.917) TCGA-ER-A19P-06 19 48789587 48789587 C T ZNF114 Missense_Mutation p.L236F 0.16 deleterious(0) benign(0) TCGA-ER-A19P-06 19 50250036 50250037 - GGA TSKS In_Frame_Ins p.L227dup 0.11 TCGA-ER-A19P-06 19 50368399 50368399 C T PNKP Silent p.V161V 0.11 TCGA-ER-A19P-06 19 53855830 53855830 T C ZNF845 Silent p.P634P 0.15 TCGA-ER-A19P-06 19 54803598 54803598 C T LILRA3 Missense_Mutation p.E76K 0.09 tolerated(0.32) benign(0.149) TCGA-ER-A19P-06 19 56424240 56424240 C T NLRP13 Missense_Mutation p.E315K 0.23 deleterious(0) possibly_damaging(0.657) TCGA-ER-A19P-06 19 56459300 56459300 C T NLRP8 Missense_Mutation p.P11L 0.08 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-ER-A19P-06 19 58858888 58858888 C G A1BG Missense_Mutation p.E437D 0.16 tolerated(0.54) benign(0.022) TCGA-ER-A19P-06 19 6535028 6535028 G T TNFSF9 Missense_Mutation p.R239L 0.13 deleterious(0.03) probably_damaging(0.911) TCGA-ER-A19P-06 19 6741257 6741257 G T TRIP10 Silent p.L54L 0.14 TCGA-ER-A19P-06 19 7168046 7168046 T A INSR Nonsense_Mutation p.R515* 0.12 TCGA-ER-A19P-06 19 7569201 7569201 C T C19orf45 Missense_Mutation p.S229F 0.10 tolerated(0.09) benign(0.081) TCGA-ER-A19P-06 19 8156383 8156383 G A FBN3 Silent p.G1999G 0.18 TCGA-ER-A19P-06 19 8976756 8976756 C T MUC16 Missense_Mutation p.G14104R 0.14 benign(0.245) TCGA-ER-A19P-06 19 9056506 9056506 C T MUC16 Missense_Mutation p.D10314N 0.13 benign(0.007) TCGA-ER-A19P-06 19 9063558 9063558 G T MUC16 Missense_Mutation p.P7963H 0.15 unknown(0) TCGA-ER-A19P-06 19 9076829 9076829 G A MUC16 Silent p.S3539S 0.12 TCGA-ER-A19P-06 19 9091124 9091124 C A MUC16 Missense_Mutation p.G231W 0.15 unknown(0) TCGA-ER-A19P-06 1 10705124 10705124 C A CASZ1 Missense_Mutation p.G1240W 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 1 114225528 114225528 A C MAGI3 Missense_Mutation p.D1113A 0.09 deleterious(0.01) benign(0.329) TCGA-ER-A19P-06 1 115238105 115238105 C T AMPD1 Silent p.R29R 0.14 TCGA-ER-A19P-06 1 115238106 115238106 C T AMPD1 Missense_Mutation p.R29K 0.14 tolerated_low_confidence(0.46) benign(0) TCGA-ER-A19P-06 1 11585237 11585237 C T PTCHD2 Silent p.F827F 0.11 TCGA-ER-A19P-06 1 118501574 118501574 C G WDR3 Missense_Mutation p.P875R 0.08 deleterious(0.03) possibly_damaging(0.649) TCGA-ER-A19P-06 1 118558601 118558601 G T SPAG17 Missense_Mutation p.P1425H 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 1 12089197 12089197 G A MIIP Missense_Mutation p.E219K 0.12 deleterious(0.05) benign(0.139) TCGA-ER-A19P-06 1 12726682 12726682 C T AADACL4 Missense_Mutation p.A387V 0.06 tolerated(0.5) benign(0.002) TCGA-ER-A19P-06 1 142803675 142803675 T C RP11-423O2.5 RNA 0.10 TCGA-ER-A19P-06 1 14925416 14925416 G C KAZN 5'UTR 0.31 TCGA-ER-A19P-06 1 149759970 149759970 C T FCGR1A Missense_Mutation p.P119L 0.07 deleterious(0) probably_damaging(0.99) TCGA-ER-A19P-06 1 155034977 155034977 G T ADAM15 Nonstop_Mutation p.*864Lext*27 0.15 TCGA-ER-A19P-06 1 156642361 156642361 G A NES Missense_Mutation p.P540L 0.08 tolerated(0.21) benign(0.059) TCGA-ER-A19P-06 1 15960047 15960047 G A DDI2 Missense_Mutation p.E207K 0.14 tolerated(0.07) possibly_damaging(0.808) TCGA-ER-A19P-06 1 160523650 160523650 G T CD84 Intron 0.17 TCGA-ER-A19P-06 1 166819131 166819131 G A POGK Missense_Mutation p.G439R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19P-06 1 173552678 173552678 G A SLC9C2 Missense_Mutation p.R203W 0.11 deleterious(0) probably_damaging(0.976) TCGA-ER-A19P-06 1 175360543 175360543 G C TNR Missense_Mutation p.P463R 0.10 tolerated(0.14) probably_damaging(0.995) TCGA-ER-A19P-06 1 175375605 175375605 C T TNR Silent p.G82G 0.10 TCGA-ER-A19P-06 1 17607179 17607179 G A PADI3 Nonsense_Mutation p.W550* 0.09 TCGA-ER-A19P-06 1 179600044 179600044 C T TDRD5 Missense_Mutation p.P372L 0.18 tolerated(0.56) benign(0.005) TCGA-ER-A19P-06 1 181548319 181548321 ACA - CACNA1E In_Frame_Del p.Y243_S244delinsC 0.09 TCGA-ER-A19P-06 1 181714493 181714493 G A CACNA1E Intron 0.18 TCGA-ER-A19P-06 1 183529292 183529292 C T NCF2 Silent p.E469E 0.24 TCGA-ER-A19P-06 1 186158700 186158700 C T HMCN1 Missense_Mutation p.A5533V 0.11 probably_damaging(0.956) TCGA-ER-A19P-06 1 19423029 19423029 G A UBR4 Silent p.R4502R 0.10 TCGA-ER-A19P-06 1 197062388 197062389 - TC ASPM Frame_Shift_Ins p.H3030Dfs*7 0.08 TCGA-ER-A19P-06 1 197404013 197404013 G A CRB1 Missense_Mutation p.R1007K 0.07 tolerated(0.64) benign(0.095) TCGA-ER-A19P-06 1 200950205 200950205 C A KIF21B Nonsense_Mutation p.G1288* 0.12 TCGA-ER-A19P-06 1 200960210 200960210 G A KIF21B Missense_Mutation p.P841L 0.10 tolerated(0.66) benign(0.322) TCGA-ER-A19P-06 1 201028386 201028386 G A CACNA1S Silent p.I1152I 0.09 TCGA-ER-A19P-06 1 201869777 201869777 C T LMOD1 Missense_Mutation p.G122R 0.13 probably_damaging(0.916) TCGA-ER-A19P-06 1 204226806 204226806 C - PLEKHA6 Frame_Shift_Del p.G400Vfs*100 0.18 TCGA-ER-A19P-06 1 205687595 205687595 G A NUCKS1 Missense_Mutation p.P182L 0.19 deleterious(0) probably_damaging(0.958) TCGA-ER-A19P-06 1 207015923 207015923 C G IL19 Missense_Mutation p.L202V 0.19 deleterious(0) possibly_damaging(0.863) TCGA-ER-A19P-06 1 207495859 207495859 C A CD55 Nonsense_Mutation p.S78* 0.08 TCGA-ER-A19P-06 1 207640102 207640102 C T CR2 Missense_Mutation p.P97L 0.11 deleterious(0.03) benign(0.092) TCGA-ER-A19P-06 1 212538450 212538450 C T TMEM206 3'UTR 0.10 TCGA-ER-A19P-06 1 228033728 228033728 G A PRSS38 Missense_Mutation p.R267Q 0.17 tolerated(0.23) possibly_damaging(0.477) TCGA-ER-A19P-06 1 228879182 228879182 C T RHOU Silent p.L158L 0.14 TCGA-ER-A19P-06 1 231472954 231472954 C A EXOC8 Nonsense_Mutation p.G180* 0.09 TCGA-ER-A19P-06 1 233231576 233231576 G T PCNXL2 Missense_Mutation p.L1291M 0.21 tolerated(0.55) benign(0.025) TCGA-ER-A19P-06 1 235747058 235747058 G A GNG4 Silent p.A27A 0.09 TCGA-ER-A19P-06 1 235929509 235929509 T C LYST Silent p.A1997A 0.09 TCGA-ER-A19P-06 1 244798794 244798794 C T C1orf101 Silent p.F884F 0.08 TCGA-ER-A19P-06 1 245771037 245771037 G A KIF26B Missense_Mutation p.A548T 0.14 tolerated(0.35) unknown(0) TCGA-ER-A19P-06 1 24663145 24663145 C T GRHL3 Missense_Mutation p.P147L 0.11 tolerated(0.4) benign(0.001) TCGA-ER-A19P-06 1 247654918 247654918 G A OR2W5 RNA 0.21 TCGA-ER-A19P-06 1 248737897 248737897 G A OR2T34 Silent p.I54I 0.12 TCGA-ER-A19P-06 1 26527421 26527421 G A CATSPER4 Missense_Mutation p.G363E 0.17 tolerated(0.25) benign(0.178) TCGA-ER-A19P-06 1 28861871 28861871 C G RCC1 Missense_Mutation p.R245G 0.09 tolerated(0.12) benign(0.203) TCGA-ER-A19P-06 1 29139122 29139122 G T OPRD1 Missense_Mutation p.R76L 0.13 deleterious(0) probably_damaging(0.996) TCGA-ER-A19P-06 1 29448325 29448325 G T TMEM200B Missense_Mutation p.P6T 0.29 tolerated_low_confidence(0.3) probably_damaging(0.981) TCGA-ER-A19P-06 1 33760881 33760881 G A ZNF362 Missense_Mutation p.S374N 0.26 tolerated(0.12) probably_damaging(0.997) TCGA-ER-A19P-06 1 37356694 37356694 C T GRIK3 Missense_Mutation p.G40E 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 1 38151997 38151997 C T C1orf109 Missense_Mutation p.V135M 0.11 deleterious(0) possibly_damaging(0.576) TCGA-ER-A19P-06 1 39823554 39823554 C G MACF1 Missense_Mutation p.L1916V 0.09 possibly_damaging(0.88) TCGA-ER-A19P-06 1 41220042 41220042 C A NFYC Intron 0.11 TCGA-ER-A19P-06 1 41466748 41466748 C G CTPS1 Silent p.P351P 0.08 TCGA-ER-A19P-06 1 41946854 41946854 C A EDN2 Missense_Mutation p.G119W 0.09 deleterious(0.03) benign(0.005) TCGA-ER-A19P-06 1 46769427 46769427 C T UQCRH 5'UTR 0.09 TCGA-ER-A19P-06 1 47560260 47560260 G A CYP4Z1 Silent p.K265K 0.08 TCGA-ER-A19P-06 1 47691495 47691495 G T TAL1 Silent p.A22A 0.21 TCGA-ER-A19P-06 1 52492996 52492996 G A TXNDC12 Missense_Mutation p.S79F 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 1 54370352 54370352 G A DIO1 Silent p.L117L 0.07 TCGA-ER-A19P-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.08 TCGA-ER-A19P-06 1 62299334 62299334 C A INADL Missense_Mutation p.H663Q 0.09 tolerated(0.6) benign(0.002) TCGA-ER-A19P-06 1 62737198 62737198 C T KANK4 Missense_Mutation p.G655E 0.07 tolerated(0.05) probably_damaging(0.972) TCGA-ER-A19P-06 1 62737248 62737248 C A KANK4 Silent p.S638S 0.08 TCGA-ER-A19P-06 1 65145412 65145412 C T CACHD1 Nonsense_Mutation p.Q1076* 0.12 TCGA-ER-A19P-06 1 6711618 6711618 G T DNAJC11 Silent p.L225L 0.09 TCGA-ER-A19P-06 1 75609546 75609546 G A LHX8 Silent p.V209V 0.15 TCGA-ER-A19P-06 1 75685015 75685015 G A SLC44A5 Missense_Mutation p.S398L 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-ER-A19P-06 1 76384599 76384599 G T ASB17 3'UTR 0.11 TCGA-ER-A19P-06 1 78392511 78392511 T A NEXN Silent p.A266A 0.07 TCGA-ER-A19P-06 1 8922989 8922989 G C ENO1 Missense_Mutation p.P398A 0.09 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-ER-A19P-06 1 90400872 90400872 G A LRRC8D Missense_Mutation p.G749R 0.10 tolerated(0.06) possibly_damaging(0.824) TCGA-ER-A19P-06 1 94054686 94054686 C - BCAR3 Frame_Shift_Del p.R260Gfs*30 0.14 TCGA-ER-A19P-06 1 980867 980867 C T AGRN Nonsense_Mutation p.R834* 0.11 TCGA-ER-A19P-06 20 1293238 1293238 G A SDCBP2 Missense_Mutation p.R185W 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 20 20037273 20037273 C T C20orf26 5'UTR 0.09 TCGA-ER-A19P-06 20 2636770 2636770 C T NOP56 Intron 0.11 TCGA-ER-A19P-06 20 30671706 30671706 C T HCK Missense_Mutation p.S181F 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-ER-A19P-06 20 31575518 31575518 C A SUN5 Missense_Mutation p.W226L 0.19 tolerated(0.08) probably_damaging(0.948) TCGA-ER-A19P-06 20 3190208 3190208 C A ITPA Nonsense_Mutation p.S4* 0.12 TCGA-ER-A19P-06 20 35689582 35689582 G T RBL1 Missense_Mutation p.Q392K 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-ER-A19P-06 20 3777297 3777297 T C CDC25B Missense_Mutation p.L40P 0.31 deleterious(0) probably_damaging(0.926) TCGA-ER-A19P-06 20 40112077 40112077 C A CHD6 Missense_Mutation p.Q780H 0.11 deleterious(0.05) benign(0.127) TCGA-ER-A19P-06 20 42089213 42089213 C A SRSF6 Silent p.R217R 0.07 TCGA-ER-A19P-06 20 43348600 43348600 G T WISP2 Silent p.L41L 0.17 TCGA-ER-A19P-06 20 43530320 43530320 C T YWHAB Missense_Mutation p.A49V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-ER-A19P-06 20 58514630 58514630 G A PPP1R3D Silent p.F119F 0.22 TCGA-ER-A19P-06 20 5904518 5904518 C T CHGB Silent p.F576F 0.11 TCGA-ER-A19P-06 20 61637677 61637677 C A BHLHE23 Silent p.S134S 0.12 TCGA-ER-A19P-06 21 31744193 31744193 T A KRTAP13-2 Silent p.G113G 0.17 TCGA-ER-A19P-06 21 35260635 35260635 C G ITSN1 3'UTR 0.15 TCGA-ER-A19P-06 21 42080618 42080618 C T DSCAM Silent p.G41G 0.17 TCGA-ER-A19P-06 21 45219493 45219493 C A RRP1 Missense_Mutation p.A285E 0.10 tolerated(0.86) benign(0.001) TCGA-ER-A19P-06 21 45953585 45953585 G A TSPEAR Silent p.C175C 0.10 TCGA-ER-A19P-06 22 21235396 21235396 C A SNAP29 Missense_Mutation p.P165Q 0.10 deleterious(0) probably_damaging(0.977) TCGA-ER-A19P-06 22 29704305 29704305 C T GAS2L1 Silent p.T70T 0.20 TCGA-ER-A19P-06 22 35804513 35804513 C A MCM5 Missense_Mutation p.P237T 0.11 deleterious(0) probably_damaging(0.983) TCGA-ER-A19P-06 22 38151612 38151612 G T TRIOBP Missense_Mutation p.W1878L 0.10 deleterious(0) probably_damaging(0.998) TCGA-ER-A19P-06 22 38209604 38209604 G A GCAT Silent p.L214L 0.08 TCGA-ER-A19P-06 22 39907868 39907868 G T MIEF1 Silent p.A53A 0.16 TCGA-ER-A19P-06 22 40060863 40060863 C G CACNA1I Silent p.A1262A 0.08 TCGA-ER-A19P-06 22 41918986 41918986 G C ACO2 Missense_Mutation p.G431R 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A19P-06 22 43658763 43658763 G T SCUBE1 Silent p.P191P 0.08 TCGA-ER-A19P-06 22 44342377 44342377 C T PNPLA3 3'UTR 0.20 TCGA-ER-A19P-06 22 50722138 50722138 G T PLXNB2 Silent p.I821I 0.23 TCGA-ER-A19P-06 2 100919445 100919445 C T LONRF2 Missense_Mutation p.E287K 0.15 deleterious(0) probably_damaging(0.98) TCGA-ER-A19P-06 2 11052795 11052795 G T KCNF1 Missense_Mutation p.R81S 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 2 112944979 112944979 C A FBLN7 Missense_Mutation p.Q406K 0.08 tolerated(0.5) benign(0.291) TCGA-ER-A19P-06 2 119727692 119727692 C A MARCO Missense_Mutation p.L68M 0.14 deleterious(0.05) probably_damaging(0.969) TCGA-ER-A19P-06 2 119915809 119915809 G T C1QL2 Missense_Mutation p.L13M 0.33 tolerated_low_confidence(0.07) unknown(0) TCGA-ER-A19P-06 2 122168502 122168502 C G CLASP1 Silent p.V788V 0.10 TCGA-ER-A19P-06 2 128892501 128892501 G A UGGT1 Missense_Mutation p.A517T 0.11 deleterious(0.02) possibly_damaging(0.756) TCGA-ER-A19P-06 2 131519914 131519914 G C AMER3 Missense_Mutation p.R90P 0.20 deleterious(0) probably_damaging(0.966) TCGA-ER-A19P-06 2 149226825 149226825 C T MBD5 Missense_Mutation p.P438L 0.13 deleterious(0) possibly_damaging(0.851) TCGA-ER-A19P-06 2 153431698 153431698 G T FMNL2 Silent p.V215V 0.15 TCGA-ER-A19P-06 2 160042314 160042314 G T TANC1 Silent p.A841A 0.15 TCGA-ER-A19P-06 2 166020347 166020348 - CT SCN3A Intron 0.10 TCGA-ER-A19P-06 2 16734194 16734194 G T FAM49A 3'UTR 0.12 TCGA-ER-A19P-06 2 173368867 173368867 C A ITGA6 Missense_Mutation p.H1055N 0.33 tolerated(0.08) benign(0.043) TCGA-ER-A19P-06 2 179639101 179639101 C T TTN Missense_Mutation p.G2297E 0.11 TCGA-ER-A19P-06 2 197171332 197171332 G A HECW2 Silent p.F898F 0.19 TCGA-ER-A19P-06 2 206166430 206166430 G T PARD3B Intron 0.09 TCGA-ER-A19P-06 2 206588559 206588559 C G NRP2 Missense_Mutation p.R239G 0.09 tolerated(0.1) probably_damaging(0.956) TCGA-ER-A19P-06 2 209302574 209302574 C T PTH2R Missense_Mutation p.R127C 0.09 deleterious(0.02) probably_damaging(0.912) TCGA-ER-A19P-06 2 211018610 211018610 T C KANSL1L Missense_Mutation p.I233V 0.07 tolerated(0.73) benign(0.007) TCGA-ER-A19P-06 2 21236133 21236133 G A APOB Missense_Mutation p.S1372F 0.05 probably_damaging(0.996) TCGA-ER-A19P-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.07 deleterious(0) probably_damaging(0.954) TCGA-ER-A19P-06 2 219529154 219529154 G A RNF25 Silent p.S302S 0.09 TCGA-ER-A19P-06 2 219900219 219900219 G T CCDC108 Silent p.L175L 0.10 TCGA-ER-A19P-06 2 238275473 238275473 A G COL6A3 Missense_Mutation p.V1786A 0.09 possibly_damaging(0.858) TCGA-ER-A19P-06 2 239353336 239353336 C T ASB1 Missense_Mutation p.P283L 0.13 deleterious(0.03) benign(0.293) TCGA-ER-A19P-06 2 242794116 242794116 G A PDCD1 Silent p.R204R 0.08 TCGA-ER-A19P-06 2 27565843 27565843 G A GTF3C2 Missense_Mutation p.P140L 0.11 deleterious(0) possibly_damaging(0.581) TCGA-ER-A19P-06 2 3447586 3447586 C T TRAPPC12 Missense_Mutation p.A485V 0.11 deleterious(0) probably_damaging(0.994) TCGA-ER-A19P-06 2 44459627 44459627 C A PPM1B 3'Flank 0.12 TCGA-ER-A19P-06 2 46086 46086 C A FAM110C Silent p.L100L 0.10 TCGA-ER-A19P-06 2 61238961 61238961 G - PUS10 Frame_Shift_Del p.P22Qfs*38 0.09 TCGA-ER-A19P-06 2 69409628 69409628 C T ANTXR1 Missense_Mutation p.R397C 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 2 71778839 71778839 C A DYSF Missense_Mutation p.L599I 0.12 deleterious(0.05) possibly_damaging(0.748) TCGA-ER-A19P-06 2 73172195 73172195 G T SFXN5 Missense_Mutation p.Q327K 0.09 tolerated(0.96) benign(0.005) TCGA-ER-A19P-06 2 74589263 74589263 C A DCTN1 Missense_Mutation p.E1205D 0.10 tolerated(0.12) benign(0.174) TCGA-ER-A19P-06 2 74687147 74687147 C T WBP1 Missense_Mutation p.P107L 0.18 deleterious(0) probably_damaging(0.917) TCGA-ER-A19P-06 2 74710152 74710152 C T CCDC142 5'Flank 0.15 TCGA-ER-A19P-06 2 79255452 79255452 C A REG3G 3'UTR 0.14 TCGA-ER-A19P-06 2 86364592 86364592 G T PTCD3 Missense_Mutation p.K660N 0.14 deleterious(0) possibly_damaging(0.756) TCGA-ER-A19P-06 2 86756387 86756387 G T RNF103-CHMP3 Silent p.S109S 0.10 TCGA-ER-A19P-06 2 8872103 8872103 G A KIDINS220 Missense_Mutation p.R1355C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.696) TCGA-ER-A19P-06 3 100277322 100277322 C T TMEM45A Silent p.V159V 0.17 TCGA-ER-A19P-06 3 10142871 10142871 G T FANCD2 3'Flank 0.09 TCGA-ER-A19P-06 3 105412384 105412384 G A CBLB Missense_Mutation p.R670W 0.09 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-ER-A19P-06 3 111672833 111672842 GGCAGCCATG TGCAGTCATT PHLDB2 Missense_Mutation p.AM945VI 0.10 TCGA-ER-A19P-06 3 121725861 121725861 G C ILDR1 Missense_Mutation p.P69R 0.12 tolerated(0.07) probably_damaging(0.997) TCGA-ER-A19P-06 3 124630955 124630955 C T MUC13 Silent p.K415K 0.12 TCGA-ER-A19P-06 3 128126924 128126924 C A EEFSEC Missense_Mutation p.P538H 0.17 deleterious(0.01) possibly_damaging(0.469) TCGA-ER-A19P-06 3 12859029 12859029 C T CAND2 Silent p.L866L 0.09 TCGA-ER-A19P-06 3 130095610 130095610 C A COL6A5 Missense_Mutation p.Q200K 0.10 tolerated(0.23) benign(0.006) TCGA-ER-A19P-06 3 130947505 130947505 C T NEK11 Silent p.S511S 0.11 TCGA-ER-A19P-06 3 137750086 137750086 G A CLDN18 3'UTR 0.21 TCGA-ER-A19P-06 3 137750087 137750087 G A CLDN18 3'UTR 0.22 TCGA-ER-A19P-06 3 138255898 138255898 A G CEP70 Intron 0.11 TCGA-ER-A19P-06 3 138255899 138255899 G A CEP70 Intron 0.11 TCGA-ER-A19P-06 3 143371173 143371173 G A SLC9A9 Missense_Mutation p.H227Y 0.12 deleterious(0.01) possibly_damaging(0.745) TCGA-ER-A19P-06 3 145790358 145790358 C - PLOD2 Frame_Shift_Del p.G613Efs*22 0.10 TCGA-ER-A19P-06 3 164776979 164776979 C G SI Missense_Mutation p.G419R 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19P-06 3 170856098 170856098 C T TNIK Missense_Mutation p.R497K 0.12 tolerated(0.08) unknown(0) TCGA-ER-A19P-06 3 179322582 179322582 C T NDUFB5 5'UTR 0.08 TCGA-ER-A19P-06 3 184099524 184099524 G C CHRD Missense_Mutation p.G178R 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 3 193188694 193188694 G T ATP13A4 Silent p.A299A 0.08 TCGA-ER-A19P-06 3 196744064 196744064 C A MFI2 Missense_Mutation p.Q270H 0.18 tolerated(0.14) benign(0.009) TCGA-ER-A19P-06 3 19921089 19921089 A T EFHB 3'UTR 0.08 TCGA-ER-A19P-06 3 25657016 25657016 G A TOP2B Missense_Mutation p.P1133L 0.17 tolerated(0.3) benign(0) TCGA-ER-A19P-06 3 32411482 32411482 G A CMTM8 3'UTR 0.20 TCGA-ER-A19P-06 3 47376274 47376274 G A KLHL18 Missense_Mutation p.G288E 0.25 tolerated(0.2) probably_damaging(1) TCGA-ER-A19P-06 3 48684205 48684205 C A CELSR3 Missense_Mutation p.R2429L 0.10 deleterious(0.02) probably_damaging(0.946) TCGA-ER-A19P-06 3 49716375 49716375 G A APEH Missense_Mutation p.S384N 0.10 tolerated(0.29) possibly_damaging(0.609) TCGA-ER-A19P-06 3 53760925 53760925 G A CACNA1D Nonsense_Mutation p.W727* 0.11 TCGA-ER-A19P-06 3 62463952 62463952 C T CADPS Missense_Mutation p.E1105K 0.21 deleterious(0.02) benign(0.097) TCGA-ER-A19P-06 3 87322591 87322591 C A POU1F1 Silent p.S66S 0.30 TCGA-ER-A19P-06 3 93593220 93593220 C T PROS1 Missense_Mutation p.A634T 0.13 deleterious(0.01) probably_damaging(0.911) TCGA-ER-A19P-06 4 1102144 1102144 A G RNF212 Missense_Mutation p.L53S 0.05 tolerated(0.38) benign(0.348) TCGA-ER-A19P-06 4 113570813 113570813 C A LARP7 Missense_Mutation p.P429H 0.12 deleterious(0.03) possibly_damaging(0.792) TCGA-ER-A19P-06 4 120987975 120987975 T C MAD2L1 5'UTR 0.12 TCGA-ER-A19P-06 4 121631501 121631501 T C PRDM5 Missense_Mutation p.K564R 0.11 tolerated(0.41) benign(0.008) TCGA-ER-A19P-06 4 121737626 121737626 G T PRDM5 Missense_Mutation p.Q283K 0.09 tolerated(1) benign(0.004) TCGA-ER-A19P-06 4 138442438 138442438 C T PCDH18 Silent p.Q1051Q 0.16 TCGA-ER-A19P-06 4 166388881 166388881 C T CPE Silent p.A182A 0.14 TCGA-ER-A19P-06 4 170523180 170523180 G C NEK1 Missense_Mutation p.Q65E 0.05 tolerated(0.06) possibly_damaging(0.782) TCGA-ER-A19P-06 4 17513639 17513639 C G QDPR Silent p.V13V 0.29 TCGA-ER-A19P-06 4 17843954 17843954 C A NCAPG Nonsense_Mutation p.S959* 0.11 TCGA-ER-A19P-06 4 189068456 189068456 C T TRIML1 Missense_Mutation p.S446F 0.16 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 4 1936885 1936885 A - WHSC1 Frame_Shift_Del p.R526Efs*72 0.21 TCGA-ER-A19P-06 4 23797437 23797437 G C PPARGC1A 3'UTR 0.16 TCGA-ER-A19P-06 4 39269662 39269662 A G WDR19 Silent p.R1103R 0.25 TCGA-ER-A19P-06 4 44177177 44177177 G A KCTD8 Missense_Mutation p.S351F 0.14 deleterious(0) probably_damaging(0.979) TCGA-ER-A19P-06 4 52752797 52752797 C A DCUN1D4 Missense_Mutation p.P136Q 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19P-06 4 62599085 62599088 AAAT - LPHN3 Frame_Shift_Del p.N337Rfs*48 0.29 TCGA-ER-A19P-06 4 647969 647969 G T PDE6B Intron 0.27 TCGA-ER-A19P-06 4 6826400 6826400 C T KIAA0232 Silent p.L74L 0.10 TCGA-ER-A19P-06 4 7044152 7044153 TG - CCDC96 Frame_Shift_Del p.D171Efs*37 0.11 TCGA-ER-A19P-06 4 76570554 76570554 A C G3BP2 3'UTR 0.12 TCGA-ER-A19P-06 4 79297000 79297000 T - FRAS1 Frame_Shift_Del p.S1088Lfs*20 0.11 TCGA-ER-A19P-06 4 79860262 79860262 G A PAQR3 Silent p.S39S 0.12 TCGA-ER-A19P-06 4 8009897 8009897 C T ABLIM2 Missense_Mutation p.D503N 0.14 tolerated(0.06) benign(0.06) TCGA-ER-A19P-06 4 952235 952235 C G TMEM175 Missense_Mutation p.P489R 0.36 tolerated(0.09) benign(0.003) TCGA-ER-A19P-06 4 96137343 96137343 G C UNC5C Silent p.P555P 0.15 TCGA-ER-A19P-06 5 101813477 101813477 C - SLCO6A1 Frame_Shift_Del p.Q236Rfs*6 0.12 TCGA-ER-A19P-06 5 121413628 121413628 A G LOX Missense_Mutation p.L18P 0.16 deleterious(0) benign(0) TCGA-ER-A19P-06 5 121488389 121488389 C T ZNF474 Missense_Mutation p.S235F 0.12 deleterious(0) probably_damaging(0.938) TCGA-ER-A19P-06 5 133304218 133304218 C G C5orf15 Missense_Mutation p.G20R 0.22 tolerated_low_confidence(0.88) benign(0.003) TCGA-ER-A19P-06 5 134785631 134785631 G A TIFAB 5'UTR 0.20 TCGA-ER-A19P-06 5 13700897 13700897 A T DNAH5 Silent p.I4525I 0.10 TCGA-ER-A19P-06 5 137271551 137271551 G A PKD2L2 Missense_Mutation p.M579I 0.17 tolerated(0.24) benign(0.002) TCGA-ER-A19P-06 5 137527989 137527989 G T CDC23 Missense_Mutation p.L419I 0.16 tolerated(0.06) probably_damaging(0.951) TCGA-ER-A19P-06 5 140011418 140011418 C T CD14 3'UTR 0.12 TCGA-ER-A19P-06 5 140166993 140166993 C T PCDHA1 Missense_Mutation p.T373I 0.16 deleterious_low_confidence(0) benign(0.015) TCGA-ER-A19P-06 5 140202275 140202275 G A PCDHA5 Silent p.G305G 0.11 TCGA-ER-A19P-06 5 140480503 140480503 G A PCDHB3 Silent p.L90L 0.09 TCGA-ER-A19P-06 5 140712378 140712378 C T PCDHGA1 Silent p.I709I 0.19 TCGA-ER-A19P-06 5 140719905 140719905 C T PCDHGA2 Missense_Mutation p.S456F 0.09 tolerated_low_confidence(0.06) benign(0.155) TCGA-ER-A19P-06 5 140745299 140745299 G A PCDHGA5 Missense_Mutation p.G468S 0.08 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-ER-A19P-06 5 140951530 140951530 G A DIAPH1 Silent p.F812F 0.19 TCGA-ER-A19P-06 5 14399214 14399214 G A TRIO Intron 0.21 TCGA-ER-A19P-06 5 146781108 146781108 C G DPYSL3 Silent p.L435L 0.16 TCGA-ER-A19P-06 5 148016615 148016617 CCA - HTR4 5'UTR 0.17 TCGA-ER-A19P-06 5 149497307 149497307 G A PDGFRB Missense_Mutation p.T1004I 0.11 tolerated(0.06) benign(0.09) TCGA-ER-A19P-06 5 150090715 150090715 G T DCTN4 Missense_Mutation p.P467H 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19P-06 5 154394324 154394324 G A KIF4B Missense_Mutation p.G302E 0.27 deleterious(0) probably_damaging(0.992) TCGA-ER-A19P-06 5 160886671 160886671 C T GABRB2 Missense_Mutation p.M139I 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-ER-A19P-06 5 161576278 161576278 C A GABRG2 Silent p.R403R 0.12 TCGA-ER-A19P-06 5 168195220 168195220 G C SLIT3 Intron 0.14 TCGA-ER-A19P-06 5 171433462 171433462 C G FBXW11 Missense_Mutation p.M15I 0.29 deleterious_low_confidence(0.02) benign(0.002) TCGA-ER-A19P-06 5 26886162 26886162 C T CDH9 Missense_Mutation p.D515N 0.12 deleterious(0) probably_damaging(0.997) TCGA-ER-A19P-06 5 35740308 35740308 C T SPEF2 Missense_Mutation p.S1090F 0.10 deleterious(0) possibly_damaging(0.548) TCGA-ER-A19P-06 5 35861019 35861019 G A IL7R Missense_Mutation p.G50R 0.18 deleterious(0.03) probably_damaging(1) TCGA-ER-A19P-06 5 35910013 35910013 C T CAPSL Silent p.R160R 0.08 TCGA-ER-A19P-06 5 41008722 41008722 G A MROH2B Silent p.I1198I 0.15 TCGA-ER-A19P-06 5 5182417 5182417 A C ADAMTS16 Missense_Mutation p.K254N 0.16 deleterious(0.03) possibly_damaging(0.873) TCGA-ER-A19P-06 5 77805809 77805809 G A LHFPL2 Silent p.F76F 0.14 TCGA-ER-A19P-06 5 7859634 7859634 C A FASTKD3 Missense_Mutation p.G635W 0.10 deleterious(0) possibly_damaging(0.875) TCGA-ER-A19P-06 5 79033517 79033517 T C CMYA5 Silent p.L2977L 0.20 TCGA-ER-A19P-06 5 850516 850516 A G ZDHHC11 Missense_Mutation p.W68R 0.08 deleterious(0) possibly_damaging(0.887) TCGA-ER-A19P-06 5 96249018 96249019 CA - ERAP2 Splice_Site p.X839_splice 0.08 TCGA-ER-A19P-06 6 108042076 108042076 G A SCML4 Silent p.Y268Y 0.10 TCGA-ER-A19P-06 6 117114203 117114203 C T GPRC6A Missense_Mutation p.G628E 0.12 deleterious(0) probably_damaging(0.971) TCGA-ER-A19P-06 6 12121787 12121787 C T HIVEP1 Missense_Mutation p.L587F 0.19 tolerated(0.08) probably_damaging(0.912) TCGA-ER-A19P-06 6 129637032 129637032 C T LAMA2 Silent p.I1287I 0.19 TCGA-ER-A19P-06 6 133595929 133595929 C - EYA4 Frame_Shift_Del p.Q5Rfs*3 0.08 TCGA-ER-A19P-06 6 136500203 136500203 T C PDE7B Missense_Mutation p.L291S 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 6 143382025 143382025 C T AIG1 5'UTR 0.16 TCGA-ER-A19P-06 6 150209777 150209777 G C RAET1E Missense_Mutation p.H217D 0.09 tolerated(0.62) benign(0.003) TCGA-ER-A19P-06 6 152614814 152614814 G A SYNE1 Missense_Mutation p.S5974F 0.12 probably_damaging(0.981) TCGA-ER-A19P-06 6 157505535 157505535 C A ARID1B Silent p.T1172T 0.12 TCGA-ER-A19P-06 6 160888624 160888624 G A LPAL2 RNA 0.17 TCGA-ER-A19P-06 6 160921913 160921913 G A LPAL2 RNA 0.19 TCGA-ER-A19P-06 6 167789547 167789547 G C TCP10 Missense_Mutation p.R199G 0.08 tolerated(0.17) possibly_damaging(0.497) TCGA-ER-A19P-06 6 17649455 17649455 G A NUP153 Missense_Mutation p.S491F 0.10 tolerated(0.13) benign(0.169) TCGA-ER-A19P-06 6 28554588 28554588 G A SCAND3 5'UTR 0.15 TCGA-ER-A19P-06 6 31560513 31560513 C G NCR3 5'UTR 0.09 TCGA-ER-A19P-06 6 31929687 31929687 G T SKIV2L Missense_Mutation p.W307L 0.05 deleterious(0.01) possibly_damaging(0.835) TCGA-ER-A19P-06 6 33408641 33408641 G T SYNGAP1 Silent p.S604S 0.08 TCGA-ER-A19P-06 6 40400541 40400541 G A LRFN2 Silent p.S104S 0.19 TCGA-ER-A19P-06 6 43214479 43214479 C A TTBK1 Missense_Mutation p.N27K 0.15 possibly_damaging(0.904) TCGA-ER-A19P-06 6 43752361 43752361 A C VEGFA 3'Flank 0.16 TCGA-ER-A19P-06 6 46663583 46663583 G A TDRD6 Silent p.L2024L 0.19 TCGA-ER-A19P-06 6 7393457 7393457 A T RIOK1 Missense_Mutation p.D66V 0.24 deleterious(0.02) benign(0.282) TCGA-ER-A19P-06 6 82901560 82901560 G T IBTK Silent p.I1125I 0.09 TCGA-ER-A19P-06 6 84025035 84025035 G A ME1 Missense_Mutation p.S233F 0.15 deleterious(0.03) possibly_damaging(0.511) TCGA-ER-A19P-06 6 84265895 84265895 G A SNAP91 Missense_Mutation p.L901F 0.29 deleterious(0) probably_damaging(0.986) TCGA-ER-A19P-06 6 87965364 87965364 C A ZNF292 Missense_Mutation p.Q673K 0.10 tolerated(0.14) benign(0.098) TCGA-ER-A19P-06 6 87970005 87970005 C A ZNF292 Missense_Mutation p.Q2220K 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-ER-A19P-06 6 90576383 90576383 C A CASP8AP2 RNA 0.10 TCGA-ER-A19P-06 6 90642470 90642470 C A BACH2 Missense_Mutation p.R728L 0.08 deleterious(0.04) benign(0.198) TCGA-ER-A19P-06 7 116399539 116399539 A G MET Missense_Mutation p.T805A 0.11 tolerated(0.39) probably_damaging(0.994) TCGA-ER-A19P-06 7 126882950 126882950 G A GRM8 Silent p.L103L 0.12 TCGA-ER-A19P-06 7 12692309 12692309 G A SCIN Nonsense_Mutation p.W706* 0.17 TCGA-ER-A19P-06 7 12692310 12692310 G A SCIN Nonsense_Mutation p.W706* 0.18 TCGA-ER-A19P-06 7 127484453 127484453 G T SND1 Missense_Mutation p.C440F 0.09 deleterious(0.03) probably_damaging(0.925) TCGA-ER-A19P-06 7 130301862 130301862 T G COPG2 Missense_Mutation p.D133A 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19P-06 7 138591834 138591835 - TGATATTCACCGGGCCCCGCCGAGGAGTCACCCTTGAGGAACTGATGG KIAA1549 In_Frame_Ins p.T1097_I1098insHQFLKGDSSAGPGEYH 0.13 TCGA-ER-A19P-06 7 140223203 140223203 G A DENND2A Silent p.L857L 0.17 TCGA-ER-A19P-06 7 140227128 140227128 G T DENND2A Missense_Mutation p.P832Q 0.44 deleterious(0) probably_damaging(0.994) TCGA-ER-A19P-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-ER-A19P-06 7 142111646 142111646 C T TRBV5-7 Silent p.L30L 0.23 TCGA-ER-A19P-06 7 143573425 143573425 C A FAM115A Missense_Mutation p.G93C 0.08 deleterious(0) probably_damaging(0.971) TCGA-ER-A19P-06 7 150554550 150554550 C T AOC1 Missense_Mutation p.S331F 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19P-06 7 151082186 151082186 G A WDR86 Missense_Mutation p.H284Y 0.10 tolerated(0.13) possibly_damaging(0.542) TCGA-ER-A19P-06 7 20199780 20199780 C T MACC1 Nonsense_Mutation p.W68* 0.19 TCGA-ER-A19P-06 7 21655874 21655874 G T DNAH11 Silent p.V1353V 0.08 TCGA-ER-A19P-06 7 22766812 22766812 G T IL6 5'UTR 0.14 TCGA-ER-A19P-06 7 26246012 26246012 G A CBX3 Missense_Mutation p.G17R 0.18 tolerated(0.51) probably_damaging(0.97) TCGA-ER-A19P-06 7 27205056 27205056 C G HOXA9 Silent p.L7L 0.19 TCGA-ER-A19P-06 7 2748814 2748814 C - AMZ1 Frame_Shift_Del p.L238Cfs*63 0.19 TCGA-ER-A19P-06 7 30706899 30706899 C T CRHR2 Missense_Mutation p.G114E 0.11 deleterious(0) probably_damaging(0.995) TCGA-ER-A19P-06 7 30793423 30793423 C T INMT Silent p.S77S 0.08 TCGA-ER-A19P-06 7 34125413 34125413 C T BMPER Missense_Mutation p.A485V 0.09 tolerated(0.16) benign(0.184) TCGA-ER-A19P-06 7 34889216 34889216 G A NPSR1 Intron 0.09 TCGA-ER-A19P-06 7 40134525 40134525 G C CDK13 Missense_Mutation p.R1495S 0.07 deleterious_low_confidence(0.05) probably_damaging(0.985) TCGA-ER-A19P-06 7 5540736 5540736 C A FBXL18 Silent p.L388L 0.09 TCGA-ER-A19P-06 7 55863575 55863575 G A SEPT14 3'UTR 0.19 TCGA-ER-A19P-06 7 64169007 64169007 C T ZNF107 Silent p.P775P 0.08 TCGA-ER-A19P-06 7 72657583 72657583 C T GTF2IRD2P1 RNA 0.09 TCGA-ER-A19P-06 7 72745679 72745679 C T FKBP6 Missense_Mutation p.P163L 0.18 deleterious(0) probably_damaging(0.932) TCGA-ER-A19P-06 7 72883954 72883954 G T BAZ1B Missense_Mutation p.P920Q 0.09 deleterious(0) possibly_damaging(0.851) TCGA-ER-A19P-06 7 76109974 76109974 A - DTX2 Frame_Shift_Del p.K50Rfs*66 0.17 TCGA-ER-A19P-06 7 76916214 76916214 G A CCDC146 Missense_Mutation p.E750K 0.18 tolerated(0.09) benign(0.003) TCGA-ER-A19P-06 7 82475925 82475925 C A PCLO Nonsense_Mutation p.E4597* 0.10 TCGA-ER-A19P-06 7 98506486 98506486 C T TRRAP Silent p.T417T 0.11 TCGA-ER-A19P-06 8 110457866 110457866 C A PKHD1L1 Missense_Mutation p.P1923Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 8 134147069 134147069 C G TG 3'UTR 0.12 TCGA-ER-A19P-06 8 135600607 135600607 G A ZFAT Silent p.L865L 0.27 TCGA-ER-A19P-06 8 143562943 143562943 G A BAI1 Silent p.Q667Q 0.14 TCGA-ER-A19P-06 8 143961094 143961094 C T CYP11B1 Missense_Mutation p.G46S 0.09 tolerated(0.65) benign(0.344) TCGA-ER-A19P-06 8 145617007 145617007 G C ADCK5 Missense_Mutation p.A319P 0.25 deleterious(0.02) benign(0.191) TCGA-ER-A19P-06 8 145726075 145726075 C G PPP1R16A Missense_Mutation p.L280V 0.36 tolerated(0.66) benign(0.026) TCGA-ER-A19P-06 8 14710969 14710969 G A SGCZ Intron 0.09 TCGA-ER-A19P-06 8 1639736 1639736 C A DLGAP2 Missense_Mutation p.Q834K 0.10 deleterious(0) benign(0.393) TCGA-ER-A19P-06 8 17409273 17409273 G A SLC7A2 Missense_Mutation p.G318D 0.15 deleterious(0) probably_damaging(0.976) TCGA-ER-A19P-06 8 22058734 22058734 G - BMP1 Intron 0.12 TCGA-ER-A19P-06 8 24261603 24261603 T A ADAMDEC1 Splice_Site p.X469_splice 0.12 TCGA-ER-A19P-06 8 27309049 27309049 G T PTK2B Intron 0.12 TCGA-ER-A19P-06 8 37688264 37688264 C G GPR124 Missense_Mutation p.P252R 0.38 deleterious(0) probably_damaging(0.988) TCGA-ER-A19P-06 8 41582036 41582036 C G ANK1 Missense_Mutation p.E250Q 0.36 deleterious(0.02) probably_damaging(1) TCGA-ER-A19P-06 8 49831458 49831458 T C SNAI2 Missense_Mutation p.K239E 0.13 deleterious(0) possibly_damaging(0.897) TCGA-ER-A19P-06 8 61763180 61763180 G C CHD7 Missense_Mutation p.G1845R 0.11 probably_damaging(0.927) TCGA-ER-A19P-06 8 67086803 67086803 C A TRIM55 Missense_Mutation p.S541Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-ER-A19P-06 8 67958081 67958082 - T COPS5 Frame_Shift_Ins p.S296Ifs*14 0.15 TCGA-ER-A19P-06 8 71646393 71646393 C T XKR9 Missense_Mutation p.P286S 0.13 tolerated(0.52) benign(0.014) TCGA-ER-A19P-06 8 87623853 87623853 G A CNGB3 Missense_Mutation p.S542F 0.17 deleterious(0) probably_damaging(0.997) TCGA-ER-A19P-06 8 87666242 87666242 G A CNGB3 Nonsense_Mutation p.Q301* 0.15 TCGA-ER-A19P-06 8 95835714 95835714 C G INTS8 Missense_Mutation p.P19A 0.07 tolerated(0.12) probably_damaging(0.997) TCGA-ER-A19P-06 8 99162719 99162719 C T POP1 Nonsense_Mutation p.R637* 0.12 TCGA-ER-A19P-06 9 104499681 104499681 G A GRIN3A Missense_Mutation p.S194L 0.34 deleterious(0) possibly_damaging(0.88) TCGA-ER-A19P-06 9 126139338 126139338 C G CRB2 Missense_Mutation p.I1285M 0.21 deleterious(0) possibly_damaging(0.695) TCGA-ER-A19P-06 9 13133826 13133826 G T MPDZ Silent p.P1487P 0.14 TCGA-ER-A19P-06 9 134387518 134387518 C G POMT1 Silent p.P381P 0.09 TCGA-ER-A19P-06 9 136337109 136337110 GG - SLC2A6 3'UTR 0.15 TCGA-ER-A19P-06 9 139273362 139273362 C G SNAPC4 Missense_Mutation p.G973R 0.09 tolerated(0.08) possibly_damaging(0.896) TCGA-ER-A19P-06 9 139889174 139889174 C G CLIC3 Missense_Mutation p.E224Q 0.24 deleterious(0) probably_damaging(0.973) TCGA-ER-A19P-06 9 140332516 140332516 C G ENTPD8 Silent p.A49A 0.08 TCGA-ER-A19P-06 9 21971145 21971148 GTTG - CDKN2A Frame_Shift_Del p.N71Afs*74 0.22 TCGA-ER-A19P-06 9 36342397 36342397 A - RNF38 Frame_Shift_Del p.F470Lfs*69 0.21 TCGA-ER-A19P-06 9 463586 463586 C A DOCK8 Silent p.L2046L 0.10 TCGA-ER-A19P-06 9 72873997 72873997 G T SMC5 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.019) TCGA-ER-A19P-06 9 79635495 79635495 G C FOXB2 Missense_Mutation p.V309L 0.20 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-ER-A19P-06 9 86356937 86356937 G A GKAP1 Missense_Mutation p.S328L 0.24 tolerated(0.34) benign(0.094) TCGA-ER-A19P-06 9 86503438 86503438 C A KIF27 Missense_Mutation p.Q683H 0.09 tolerated(0.12) benign(0.008) TCGA-ER-A19P-06 X 100229165 100229165 C T ARL13A Missense_Mutation p.L37F 0.24 tolerated(0.08) benign(0.126) TCGA-ER-A19P-06 X 107936108 107936108 G T COL4A5 Missense_Mutation p.M1553I 0.09 possibly_damaging(0.765) TCGA-ER-A19P-06 X 112053139 112053139 G A AMOT Missense_Mutation p.S538L 0.19 unknown(0) TCGA-ER-A19P-06 X 117528104 117528104 G A WDR44 Missense_Mutation p.D305N 0.15 deleterious(0.03) probably_damaging(0.971) TCGA-ER-A19P-06 X 119675486 119675486 G A CUL4B Missense_Mutation p.L490F 0.14 deleterious(0.01) probably_damaging(0.911) TCGA-ER-A19P-06 X 147743486 147743486 G A AFF2 Missense_Mutation p.E80K 0.11 deleterious(0) probably_damaging(0.987) TCGA-ER-A19P-06 X 150869165 150869165 G A PRRG3 Missense_Mutation p.R119Q 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-ER-A19P-06 X 151900616 151900616 G A MAGEA12 Missense_Mutation p.P62L 0.11 tolerated(0.26) benign(0.021) TCGA-ER-A19P-06 X 154344329 154344331 CAG AT BRCC3 Splice_Site p.X208_splice 0.11 TCGA-ER-A19P-06 X 19373504 19373504 G A PDHA1 Nonsense_Mutation p.W252* 0.12 TCGA-ER-A19P-06 X 24006591 24006591 C T KLHL15 Missense_Mutation p.G421E 0.13 deleterious(0) probably_damaging(0.914) TCGA-ER-A19P-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.08 TCGA-ER-A19P-06 X 47073812 47073812 C T UBA1 Silent p.F975F 0.12 TCGA-ER-A19P-06 X 47918962 47918962 G A ZNF630 Missense_Mutation p.P290L 0.11 tolerated(0.11) benign(0.021) TCGA-ER-A19P-06 X 47918963 47918963 G A ZNF630 Missense_Mutation p.P290S 0.11 tolerated(0.15) possibly_damaging(0.637) TCGA-ER-A19P-06 X 52681978 52681978 G A SSX7 Silent p.S42S 0.12 TCGA-ER-A19P-06 X 54275597 54275597 T C WNK3 Missense_Mutation p.T1062A 0.09 tolerated(0.25) benign(0.003) TCGA-ER-A19P-06 X 54957746 54957746 G A TRO 3'UTR 0.08 TCGA-ER-A19P-06 X 66863242 66863242 C G AR Silent p.A587A 0.09 TCGA-ER-A19P-06 X 71681864 71681864 G T HDAC8 Missense_Mutation p.P332Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-ER-A19P-06 X 89177130 89177130 G A TGIF2LX Missense_Mutation p.E16K 0.11 deleterious_low_confidence(0.04) benign(0.014) TCGA-ER-A19P-06 X 91132191 91132191 G A PCDH11X Missense_Mutation p.E318K 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 10 105778643 105778643 C T SLK Nonsense_Mutation p.Q1037* 0.38 TCGA-ER-A19Q-06 10 129906068 129906068 G A MKI67 Silent p.L1346L 0.21 TCGA-ER-A19Q-06 10 91528104 91528104 C T KIF20B Missense_Mutation p.P1643S 0.24 tolerated(0.12) benign(0.316) TCGA-ER-A19Q-06 10 98170121 98170121 C T TLL2 Missense_Mutation p.E387K 0.27 deleterious(0.05) probably_damaging(0.975) TCGA-ER-A19Q-06 11 102814891 102814891 G A MMP13 3'UTR 0.66 TCGA-ER-A19Q-06 11 17417462 17417462 G A ABCC8 Missense_Mutation p.R1379C 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 11 55339967 55339967 G A OR4C16 Missense_Mutation p.V122M 0.30 deleterious(0.02) benign(0.391) TCGA-ER-A19Q-06 11 55563175 55563175 C T OR5D14 Silent p.I48I 0.29 TCGA-ER-A19Q-06 11 62566040 62566040 G A NXF1 Missense_Mutation p.R342C 0.38 deleterious(0) probably_damaging(0.958) TCGA-ER-A19Q-06 11 62782399 62782399 C T SLC22A8 Missense_Mutation p.G11E 0.23 deleterious(0) possibly_damaging(0.747) TCGA-ER-A19Q-06 11 64434811 64434811 C T NRXN2 Missense_Mutation p.G570E 0.31 deleterious(0) possibly_damaging(0.815) TCGA-ER-A19Q-06 11 67077377 67077377 C T SSH3 Silent p.I449I 0.10 TCGA-ER-A19Q-06 11 6815864 6815864 C T OR6A2 3'UTR 0.42 TCGA-ER-A19Q-06 11 71907152 71907152 G A FOLR1 Silent p.G235G 0.64 TCGA-ER-A19Q-06 11 82880148 82880148 C G PCF11 Nonsense_Mutation p.S924* 0.64 TCGA-ER-A19Q-06 12 118519988 118519988 G A VSIG10 Missense_Mutation p.A203V 0.32 tolerated(0.2) probably_damaging(0.987) TCGA-ER-A19Q-06 12 122473294 122473294 C T BCL7A Missense_Mutation p.P78S 0.35 tolerated(0.13) probably_damaging(1) TCGA-ER-A19Q-06 12 124284935 124284935 G A DNAH10 Missense_Mutation p.R703K 0.23 benign(0.01) TCGA-ER-A19Q-06 12 14839150 14839150 G A GUCY2C Missense_Mutation p.R114W 0.35 deleterious(0.03) possibly_damaging(0.67) TCGA-ER-A19Q-06 12 57864846 57864846 C T GLI1 Missense_Mutation p.P775S 0.22 tolerated(0.3) benign(0.001) TCGA-ER-A19Q-06 12 7585069 7585069 G A CD163L1 Missense_Mutation p.R237C 0.29 tolerated(0.2) possibly_damaging(0.684) TCGA-ER-A19Q-06 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.36 tolerated(1) benign(0.007) TCGA-ER-A19Q-06 13 25363493 25363493 G C RNF17 Missense_Mutation p.R264P 0.33 tolerated(0.16) probably_damaging(0.969) TCGA-ER-A19Q-06 14 101012897 101012897 C T BEGAIN Silent p.L39L 0.28 TCGA-ER-A19Q-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.14 TCGA-ER-A19Q-06 14 24620532 24620532 C T RNF31 Missense_Mutation p.R561C 0.41 tolerated(0.11) benign(0.016) TCGA-ER-A19Q-06 14 52481052 52481052 C T NID2 Missense_Mutation p.G1125S 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-ER-A19Q-06 14 70171364 70171364 A T KIAA0247 Silent p.I121I 0.26 TCGA-ER-A19Q-06 14 75386613 75386613 G A RPS6KL1 Missense_Mutation p.R109W 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 14 75747272 75747272 G A FOS Missense_Mutation p.E135K 0.33 deleterious(0) probably_damaging(0.995) TCGA-ER-A19Q-06 14 77706863 77706863 G A TMEM63C Missense_Mutation p.D326N 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 15 20643991 20643991 C T HERC2P3 RNA 0.12 TCGA-ER-A19Q-06 15 54707217 54707217 G A UNC13C Missense_Mutation p.E1629K 0.32 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ER-A19Q-06 15 56388259 56388259 G A RFX7 Missense_Mutation p.S556F 0.28 deleterious_low_confidence(0.04) benign(0.352) TCGA-ER-A19Q-06 15 56390309 56390309 G A RFX7 Silent p.I359I 0.24 TCGA-ER-A19Q-06 15 65297207 65297207 T C MTFMT Silent p.L320L 0.32 TCGA-ER-A19Q-06 15 68624236 68624236 G A ITGA11 Silent p.F577F 0.24 TCGA-ER-A19Q-06 15 74244183 74244183 C A LOXL1 3'UTR 0.10 TCGA-ER-A19Q-06 15 79059079 79059079 C G ADAMTS7 Silent p.V1058V 0.37 TCGA-ER-A19Q-06 15 99500325 99500325 C T IGF1R Missense_Mutation p.P1253L 0.35 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 16 58543093 58543093 G A NDRG4 Silent p.Q323Q 0.30 TCGA-ER-A19Q-06 17 10352058 10352058 C T MYH4 Missense_Mutation p.E1470K 0.25 deleterious(0.01) possibly_damaging(0.796) TCGA-ER-A19Q-06 17 10358038 10358038 G A MYH4 Missense_Mutation p.P842L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19Q-06 17 12844381 12844381 C T ARHGAP44 Silent p.L197L 0.19 TCGA-ER-A19Q-06 17 3030350 3030350 G A OR1G1 Silent p.L166L 0.28 TCGA-ER-A19Q-06 17 39992141 39992141 G A NT5C3B Silent p.A27A 0.24 TCGA-ER-A19Q-06 17 43111405 43111405 G A DCAKD Intron 0.13 TCGA-ER-A19Q-06 17 43111675 43111675 G A DCAKD Missense_Mutation p.R66C 0.30 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 17 5076250 5076250 G A USP6 Missense_Mutation p.E1400K 0.37 tolerated_low_confidence(1) benign(0) TCGA-ER-A19Q-06 17 56232787 56232787 G A OR4D1 Silent p.T91T 0.44 TCGA-ER-A19Q-06 17 56326478 56326478 C T LPO Missense_Mutation p.P128L 0.17 tolerated(0.34) benign(0.001) TCGA-ER-A19Q-06 17 72958362 72958362 G A HID1 Missense_Mutation p.S193F 0.37 deleterious(0) possibly_damaging(0.89) TCGA-ER-A19Q-06 18 22806369 22806369 G A ZNF521 Missense_Mutation p.P505S 0.17 tolerated(0.42) benign(0.135) TCGA-ER-A19Q-06 18 48575077 48575077 C T SMAD4 Missense_Mutation p.P91S 0.39 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 18 76754643 76754643 C T SALL3 Silent p.G884G 0.28 TCGA-ER-A19Q-06 19 12090194 12090194 G C ZNF763 3'UTR 0.40 TCGA-ER-A19Q-06 19 14263412 14263412 C T LPHN1 Missense_Mutation p.R1151K 0.42 deleterious(0.01) probably_damaging(0.92) TCGA-ER-A19Q-06 19 19338872 19338872 G A NCAN Missense_Mutation p.E815K 0.47 tolerated(0.19) benign(0.115) TCGA-ER-A19Q-06 19 3028958 3028958 G A TLE2 5'UTR 0.10 TCGA-ER-A19Q-06 19 52496598 52496598 T C ZNF615 Silent p.L588L 0.30 TCGA-ER-A19Q-06 19 7125493 7125493 C T INSR Missense_Mutation p.R1020Q 0.51 deleterious(0) probably_damaging(0.978) TCGA-ER-A19Q-06 1 103449711 103449711 C T COL11A1 Missense_Mutation p.G847R 0.26 unknown(0) TCGA-ER-A19Q-06 1 111784988 111784988 G A CHI3L2 Intron 0.40 TCGA-ER-A19Q-06 1 111854906 111854906 C T CHIA Silent p.L50L 0.27 TCGA-ER-A19Q-06 1 112319687 112319687 A G KCND3 Missense_Mutation p.I576T 0.32 deleterious_low_confidence(0) benign(0.152) TCGA-ER-A19Q-06 1 114454688 114454688 C T DCLRE1B Missense_Mutation p.L492F 0.32 tolerated_low_confidence(0.28) benign(0.004) TCGA-ER-A19Q-06 1 11807497 11807497 G A AGTRAP Nonsense_Mutation p.W21* 0.32 TCGA-ER-A19Q-06 1 152784962 152784962 C T LCE1B Missense_Mutation p.P14S 0.46 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19Q-06 1 155691323 155691323 C T DAP3 Nonsense_Mutation p.Q62* 0.09 TCGA-ER-A19Q-06 1 181701872 181701872 C T CACNA1E Silent p.L884L 0.42 TCGA-ER-A19Q-06 1 181701873 181701873 T C CACNA1E Missense_Mutation p.L884P 0.42 tolerated(0.28) benign(0) TCGA-ER-A19Q-06 1 203149641 203149641 G A CHI3L1 Missense_Mutation p.P284L 0.36 tolerated(0.06) benign(0.227) TCGA-ER-A19Q-06 1 203149767 203149767 C T CHI3L1 Missense_Mutation p.G242E 0.24 tolerated(0.34) benign(0.314) TCGA-ER-A19Q-06 1 206902126 206902126 C T MAPKAPK2 Silent p.I117I 0.50 TCGA-ER-A19Q-06 1 34254227 34254227 G A CSMD2 Missense_Mutation p.S506F 0.23 deleterious(0.01) possibly_damaging(0.707) TCGA-ER-A19Q-06 1 36645654 36645654 C T MAP7D1 Missense_Mutation p.S834F 0.31 benign(0.184) TCGA-ER-A19Q-06 1 39877725 39877725 A C KIAA0754 Missense_Mutation p.E460D 0.30 benign(0.002) TCGA-ER-A19Q-06 1 60538226 60538226 G A C1orf87 Silent p.L30L 0.28 TCGA-ER-A19Q-06 1 6194871 6194871 G A CHD5 Silent p.S973S 0.35 TCGA-ER-A19Q-06 1 9657000 9657000 C T TMEM201 Silent p.D106D 0.26 TCGA-ER-A19Q-06 1 9657001 9657001 C T TMEM201 Missense_Mutation p.P107S 0.27 tolerated(0.06) possibly_damaging(0.555) TCGA-ER-A19Q-06 20 40827983 40827983 C T PTPRT Silent p.R796R 0.54 TCGA-ER-A19Q-06 20 47863763 47863763 C T ZNFX1 3'UTR 0.11 TCGA-ER-A19Q-06 21 38114028 38114028 G A SIM2 Silent p.K287K 0.21 TCGA-ER-A19Q-06 21 43864730 43864730 G A UBASH3A Missense_Mutation p.D609N 0.28 deleterious(0.04) benign(0.071) TCGA-ER-A19Q-06 21 44485500 44485500 G A CBS Silent p.D221D 0.26 TCGA-ER-A19Q-06 22 26747191 26747191 C T SEZ6L Missense_Mutation p.R861C 0.26 deleterious(0) possibly_damaging(0.896) TCGA-ER-A19Q-06 22 38120766 38120766 C T TRIOBP Missense_Mutation p.R735C 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-ER-A19Q-06 22 41277926 41277926 C T XPNPEP3 Missense_Mutation p.P112S 0.22 deleterious(0) probably_damaging(0.996) TCGA-ER-A19Q-06 22 41742066 41742066 G A ZC3H7B Missense_Mutation p.E507K 0.30 deleterious(0) probably_damaging(0.996) TCGA-ER-A19Q-06 2 112786455 112786455 G A MERTK 3'UTR 0.16 TCGA-ER-A19Q-06 2 125521370 125521370 G A CNTNAP5 Missense_Mutation p.G785S 0.20 deleterious(0) possibly_damaging(0.839) TCGA-ER-A19Q-06 2 153572514 153572514 C T PRPF40A Missense_Mutation p.G71R 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-ER-A19Q-06 2 173349959 173349959 G A ITGA6 Silent p.L607L 0.28 TCGA-ER-A19Q-06 2 179489312 179489312 C T TTN Missense_Mutation p.E14899K 0.29 TCGA-ER-A19Q-06 2 196834754 196834754 G A DNAH7 Missense_Mutation p.S708L 0.25 tolerated(0.17) benign(0.01) TCGA-ER-A19Q-06 2 197784798 197784798 G A PGAP1 Missense_Mutation p.A75V 0.33 deleterious(0) probably_damaging(0.925) TCGA-ER-A19Q-06 2 204062079 204062079 C T NBEAL1 Missense_Mutation p.R2336C 0.32 deleterious(0) probably_damaging(0.931) TCGA-ER-A19Q-06 2 219896318 219896318 C T CCDC108 Silent p.R236R 0.22 TCGA-ER-A19Q-06 2 231108475 231108475 G A SP140 Missense_Mutation p.D174N 0.36 tolerated(0.48) benign(0.067) TCGA-ER-A19Q-06 2 28999833 28999833 C T PPP1CB Missense_Mutation p.P57S 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.711) TCGA-ER-A19Q-06 2 29240666 29240666 C T FAM179A Missense_Mutation p.P402S 0.46 tolerated(0.2) benign(0.11) TCGA-ER-A19Q-06 2 48818852 48818852 C T STON1-GTF2A1L Missense_Mutation p.P664L 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 2 50699451 50699451 C T NRXN1 Missense_Mutation p.E1117K 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-ER-A19Q-06 2 84780075 84780075 G A DNAH6 Missense_Mutation p.E507K 0.22 tolerated(0.15) benign(0.007) TCGA-ER-A19Q-06 3 105266008 105266008 C T ALCAM Nonsense_Mutation p.R374* 0.27 TCGA-ER-A19Q-06 3 121647356 121647356 G A SLC15A2 Missense_Mutation p.G432E 0.23 deleterious(0.02) benign(0.072) TCGA-ER-A19Q-06 3 124560313 124560313 C T ITGB5 Missense_Mutation p.E233K 0.33 tolerated(0.08) probably_damaging(1) TCGA-ER-A19Q-06 3 1262438 1262438 A T CNTN6 Missense_Mutation p.L41F 0.29 tolerated(0.08) possibly_damaging(0.511) TCGA-ER-A19Q-06 3 167159920 167159920 C T SERPINI2 Missense_Mutation p.G399R 0.21 tolerated(0.15) benign(0.039) TCGA-ER-A19Q-06 3 169497049 169497049 G T MYNN Missense_Mutation p.V254F 0.22 tolerated(0.15) benign(0.1) TCGA-ER-A19Q-06 3 189526123 189526123 G A TP63 Silent p.S129S 0.42 TCGA-ER-A19Q-06 3 37151058 37151058 G A LRRFIP2 Missense_Mutation p.S190F 0.33 tolerated(0.06) benign(0.361) TCGA-ER-A19Q-06 3 46944049 46944049 C T PTH1R Silent p.P415P 0.33 TCGA-ER-A19Q-06 4 100137326 100137326 G A ADH6 Missense_Mutation p.R38C 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A19Q-06 4 128870972 128870972 G A MFSD8 Missense_Mutation p.P62L 0.23 deleterious(0.02) benign(0.35) TCGA-ER-A19Q-06 4 188924786 188924786 C T ZFP42 Silent p.F275F 0.48 TCGA-ER-A19Q-06 4 38690508 38690508 G A KLF3 Silent p.P120P 0.20 TCGA-ER-A19Q-06 4 71275679 71275679 C T PROL1 Missense_Mutation p.P212S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19Q-06 4 71509542 71509542 C T ENAM Missense_Mutation p.P800L 0.22 tolerated(0.16) benign(0.017) TCGA-ER-A19Q-06 4 77252515 77252515 G A CCDC158 Missense_Mutation p.S971L 0.26 tolerated(0.34) benign(0.003) TCGA-ER-A19Q-06 4 89670943 89670943 G A FAM13A Silent p.F686F 0.33 TCGA-ER-A19Q-06 4 985298 985298 G A SLC26A1 Missense_Mutation p.P65L 0.25 tolerated(1) benign(0.003) TCGA-ER-A19Q-06 5 112200167 112200167 C T SRP19 Missense_Mutation p.P44L 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A19Q-06 5 137677062 137677062 C T FAM53C Missense_Mutation p.T13I 0.42 deleterious(0.01) benign(0.024) TCGA-ER-A19Q-06 5 140515662 140515662 G A PCDHB5 Missense_Mutation p.D216N 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A19Q-06 5 149225411 149225411 G A PPARGC1B Missense_Mutation p.E969K 0.58 deleterious(0) probably_damaging(0.997) TCGA-ER-A19Q-06 5 158158157 158158157 C T EBF1 Missense_Mutation p.E349K 0.45 deleterious(0) probably_damaging(0.939) TCGA-ER-A19Q-06 5 36035975 36035975 C T UGT3A2 Missense_Mutation p.G466E 0.20 tolerated(0.07) possibly_damaging(0.718) TCGA-ER-A19Q-06 5 475069 475069 G A SLC9A3 Silent p.S810S 0.17 TCGA-ER-A19Q-06 5 479904 479904 C T SLC9A3 Intron 0.50 TCGA-ER-A19Q-06 5 74066456 74066456 G A NSA2 Missense_Mutation p.G115R 0.22 deleterious(0.01) benign(0.064) TCGA-ER-A19Q-06 5 74066457 74066457 G A NSA2 Missense_Mutation p.G115E 0.22 deleterious(0.01) benign(0.064) TCGA-ER-A19Q-06 6 138417518 138417518 C T PERP Missense_Mutation p.V110M 0.28 tolerated(0.25) benign(0.357) TCGA-ER-A19Q-06 6 29275146 29275146 C T OR14J1 Missense_Mutation p.P227L 0.60 deleterious(0) probably_damaging(0.93) TCGA-ER-A19Q-06 6 31785399 31785399 C T HSPA1A Silent p.F622F 0.53 TCGA-ER-A19Q-06 6 35782490 35782490 T A LHFPL5 Missense_Mutation p.F194I 0.52 tolerated(0.15) benign(0.11) TCGA-ER-A19Q-06 6 39163692 39163692 G T KCNK5 Silent p.P86P 0.10 TCGA-ER-A19Q-06 6 42656026 42656026 C T UBR2 Silent p.S1642S 0.56 TCGA-ER-A19Q-06 6 42656027 42656027 C T UBR2 Nonsense_Mutation p.Q1643* 0.56 TCGA-ER-A19Q-06 7 102079431 102079431 G A ORAI2 Missense_Mutation p.D10N 0.28 tolerated_low_confidence(0.72) benign(0.027) TCGA-ER-A19Q-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-ER-A19Q-06 7 141618751 141618751 C T OR9A4 Missense_Mutation p.L26F 0.15 deleterious(0.01) benign(0.32) TCGA-ER-A19Q-06 7 141759379 141759379 G A MGAM Silent p.G1309G 0.38 TCGA-ER-A19Q-06 7 142457353 142457353 C T PRSS1 Silent p.I6I 0.31 TCGA-ER-A19Q-06 7 143807482 143807482 G A OR2A2 Silent p.Q269Q 0.39 TCGA-ER-A19Q-06 7 150439877 150439877 C T GIMAP5 Missense_Mutation p.S217F 0.35 deleterious(0.02) possibly_damaging(0.863) TCGA-ER-A19Q-06 7 1526267 1526267 G A INTS1 Silent p.A990A 0.26 TCGA-ER-A19Q-06 7 21818633 21818633 C T DNAH11 Missense_Mutation p.H3139Y 0.40 benign(0.212) TCGA-ER-A19Q-06 7 2740214 2740214 C T AMZ1 Silent p.F43F 0.22 TCGA-ER-A19Q-06 7 45148639 45148639 G A TBRG4 Silent p.P66P 0.25 TCGA-ER-A19Q-06 7 99564802 99564802 G A AZGP1 Missense_Mutation p.R241W 0.31 tolerated(0.06) possibly_damaging(0.899) TCGA-ER-A19Q-06 9 101133789 101133789 C T GABBR2 Nonsense_Mutation p.W576* 0.50 TCGA-ER-A19Q-06 9 33062073 33062073 G A SMU1 Missense_Mutation p.P202S 0.46 deleterious(0) probably_damaging(0.949) TCGA-ER-A19Q-06 9 35749242 35749242 C T RGP1 5'Flank 0.89 TCGA-ER-A19Q-06 9 35813656 35813656 G A HINT2 Silent p.L69L 0.57 TCGA-ER-A19Q-06 9 73151678 73151678 C T TRPM3 Missense_Mutation p.A1439T 0.49 tolerated_low_confidence(0.78) benign(0.007) TCGA-ER-A19Q-06 X 117727237 117727237 C T DOCK11 Missense_Mutation p.H734Y 0.63 deleterious(0) probably_damaging(0.931) TCGA-ER-A19Q-06 X 153594957 153594957 G A FLNA Silent p.Y346Y 0.41 TCGA-ER-A19Q-06 X 27999112 27999112 C T DCAF8L1 Missense_Mutation p.E114K 0.50 tolerated_low_confidence(0.3) benign(0.334) TCGA-ER-A19Q-06 X 48887842 48887842 G A TFE3 Silent p.L519L 0.45 TCGA-ER-A19Q-06 X 48887843 48887843 G A TFE3 Silent p.H518H 0.45 TCGA-ER-A19Q-06 X 73963798 73963798 C T KIAA2022 Silent p.Q198Q 0.42 TCGA-ER-A19S-06 10 101978865 101978865 G A CHUK Missense_Mutation p.P197S 0.07 tolerated(0.24) benign(0.153) TCGA-ER-A19S-06 10 102249812 102249812 G A SEC31B Missense_Mutation p.P973L 0.20 deleterious(0.03) benign(0.009) TCGA-ER-A19S-06 10 102746603 102746603 T C MRPL43 Missense_Mutation p.N123S 0.12 tolerated(0.86) possibly_damaging(0.899) TCGA-ER-A19S-06 10 106737111 106737111 C T SORCS3 Missense_Mutation p.P272S 0.08 tolerated(0.35) probably_damaging(0.99) TCGA-ER-A19S-06 10 124268238 124268238 G A HTRA1 Missense_Mutation p.D358N 0.17 deleterious(0) possibly_damaging(0.785) TCGA-ER-A19S-06 10 124399744 124399744 C T DMBT1 Silent p.V2248V 0.11 TCGA-ER-A19S-06 10 22830847 22830847 G A PIP4K2A Missense_Mutation p.H308Y 0.10 tolerated(1) benign(0.106) TCGA-ER-A19S-06 10 22830848 22830848 G A PIP4K2A Silent p.T307T 0.10 TCGA-ER-A19S-06 10 45799336 45799336 C T OR13A1 Missense_Mutation p.G179R 0.10 deleterious(0.02) probably_damaging(0.93) TCGA-ER-A19S-06 10 55587186 55587186 G A PCDH15 Missense_Mutation p.A1445V 0.15 tolerated_low_confidence(0.11) benign(0.009) TCGA-ER-A19S-06 11 1097804 1097804 C A MUC2 Nonsense_Mutation p.C2299* 0.29 TCGA-ER-A19S-06 11 118343772 118343772 C T KMT2A Missense_Mutation p.S633F 0.22 probably_damaging(0.982) TCGA-ER-A19S-06 11 18956328 18956328 C A MRGPRX1 Missense_Mutation p.D2Y 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-ER-A19S-06 11 5461848 5461848 C T OR51I1 Silent p.K299K 0.10 TCGA-ER-A19S-06 11 61550977 61550977 C T MYRF Silent p.L1008L 0.06 TCGA-ER-A19S-06 11 68207324 68207324 C T LRP5 Silent p.N1476N 0.23 TCGA-ER-A19S-06 11 76872132 76872132 C T MYO7A Silent p.I438I 0.15 TCGA-ER-A19S-06 12 109306287 109306287 A G SVOP 3'UTR 0.10 TCGA-ER-A19S-06 12 109895484 109895484 C T KCTD10 Missense_Mutation p.A160T 0.11 deleterious(0.04) benign(0.002) TCGA-ER-A19S-06 12 111748275 111748275 G A CUX2 Silent p.K563K 0.10 TCGA-ER-A19S-06 12 124401078 124401078 C T DNAH10 Silent p.F3481F 0.06 TCGA-ER-A19S-06 12 132551950 132551950 G A EP400 Silent p.L2931L 0.11 TCGA-ER-A19S-06 12 132562000 132562000 C T EP400 Nonsense_Mutation p.Q3052* 0.08 TCGA-ER-A19S-06 12 2983187 2983187 G A FOXM1 Missense_Mutation p.P153L 0.20 tolerated(0.06) benign(0.007) TCGA-ER-A19S-06 12 54911350 54911350 C T NCKAP1L Missense_Mutation p.R377C 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 12 56536866 56536866 A G ESYT1 Missense_Mutation p.K1028R 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A19S-06 12 7635321 7635321 C T CD163 Silent p.G1055G 0.22 TCGA-ER-A19S-06 12 76767208 76767208 G A OSBPL8 Silent p.F611F 0.11 TCGA-ER-A19S-06 12 97147663 97147663 C T C12orf55 Silent p.I2609I 0.26 TCGA-ER-A19S-06 13 111367762 111367762 C T ING1 5'UTR 0.24 TCGA-ER-A19S-06 13 31232501 31232501 T C USPL1 Silent p.L763L 0.12 TCGA-ER-A19S-06 13 52709904 52709904 G A NEK3 Missense_Mutation p.L407F 0.11 deleterious(0) probably_damaging(0.924) TCGA-ER-A19S-06 13 70314559 70314559 C T KLHL1 Missense_Mutation p.R590Q 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 13 77672656 77672656 G A MYCBP2 Missense_Mutation p.P2840L 0.17 probably_damaging(0.996) TCGA-ER-A19S-06 14 103404651 103404651 G A CDC42BPB Missense_Mutation p.P1642L 0.06 tolerated(0.05) benign(0.008) TCGA-ER-A19S-06 14 103442137 103442137 G A CDC42BPB Missense_Mutation p.S464F 0.09 deleterious(0.03) possibly_damaging(0.895) TCGA-ER-A19S-06 14 105355980 105355980 A G CEP170B Missense_Mutation p.S1255G 0.20 tolerated(0.59) benign(0.003) TCGA-ER-A19S-06 14 106518634 106518634 G A IGHV3-7 Silent p.L39L 0.08 TCGA-ER-A19S-06 14 19378555 19378555 G A OR11H12 Missense_Mutation p.G321E 0.20 tolerated(0.12) benign(0.033) TCGA-ER-A19S-06 14 23243589 23243589 C T SLC7A7 Missense_Mutation p.E407K 0.08 tolerated(0.97) benign(0.021) TCGA-ER-A19S-06 14 23888691 23888691 C A MYH7 Splice_Site p.X1285_splice 0.14 TCGA-ER-A19S-06 14 31774132 31774132 G A RP11-596D21.1 3'Flank 0.14 TCGA-ER-A19S-06 14 63453887 63453887 C T KCNH5 Missense_Mutation p.R151Q 0.13 tolerated(0.06) possibly_damaging(0.616) TCGA-ER-A19S-06 14 70989757 70989757 G A ADAM20 Missense_Mutation p.P623L 0.11 deleterious(0.01) probably_damaging(0.929) TCGA-ER-A19S-06 15 25417836 25417836 C T SNORD115-2 RNA 0.26 TCGA-ER-A19S-06 15 35274830 35274830 C T ZNF770 Missense_Mutation p.G269D 0.31 tolerated(0.31) benign(0.005) TCGA-ER-A19S-06 15 40493133 40493133 G A BUB1B Missense_Mutation p.E507K 0.34 tolerated(0.29) benign(0.004) TCGA-ER-A19S-06 15 58925492 58925492 G A ADAM10 Missense_Mutation p.T360I 0.12 deleterious(0) probably_damaging(0.968) TCGA-ER-A19S-06 15 74181493 74181493 C T TBC1D21 3'UTR 0.14 TCGA-ER-A19S-06 15 74919947 74919947 A G CLK3 Missense_Mutation p.D475G 0.05 deleterious(0) probably_damaging(0.999) TCGA-ER-A19S-06 15 86822934 86822934 A G AGBL1 Missense_Mutation p.T668A 0.16 deleterious(0.02) possibly_damaging(0.459) TCGA-ER-A19S-06 15 99512803 99512803 C T PGPEP1L Silent p.R74R 0.35 TCGA-ER-A19S-06 16 1144753 1144753 G A C1QTNF8 Missense_Mutation p.P57L 0.18 deleterious(0.01) benign(0.013) TCGA-ER-A19S-06 16 20970677 20970677 C T DNAH3 Silent p.Q3550Q 0.09 TCGA-ER-A19S-06 16 2334337 2334337 C T ABCA3 Missense_Mutation p.E1269K 0.23 tolerated(0.1) benign(0.111) TCGA-ER-A19S-06 16 50763802 50763802 C T NOD2 Silent p.L1014L 0.09 TCGA-ER-A19S-06 16 66974523 66974523 C T CES2 Silent p.F311F 0.14 TCGA-ER-A19S-06 16 68021800 68021800 A C DPEP2 Silent p.G387G 0.16 TCGA-ER-A19S-06 16 69201126 69201126 C T CIRH1A Intron 0.17 TCGA-ER-A19S-06 16 70605701 70605701 C T SF3B3 Silent p.T1213T 0.08 TCGA-ER-A19S-06 16 70605702 70605702 C T SF3B3 Missense_Mutation p.R1214C 0.08 deleterious(0) probably_damaging(0.953) TCGA-ER-A19S-06 16 83636110 83636110 G T CDH13 Nonsense_Mutation p.G385* 0.14 TCGA-ER-A19S-06 17 10433034 10433034 C T MYH2 Missense_Mutation p.M988I 0.15 tolerated(0.06) benign(0.291) TCGA-ER-A19S-06 17 11865491 11865491 A G DNAH9 Missense_Mutation p.N4384S 0.10 benign(0.014) TCGA-ER-A19S-06 17 42274730 42274730 C T ATXN7L3 Silent p.Q74Q 0.13 TCGA-ER-A19S-06 17 56329569 56329569 G A LPO Silent p.G269G 0.15 TCGA-ER-A19S-06 17 61899393 61899393 C G FTSJ3 Missense_Mutation p.E476Q 0.34 deleterious(0.02) benign(0.267) TCGA-ER-A19S-06 17 62750560 62750560 G A hsa-mir-6080 RNA 0.19 TCGA-ER-A19S-06 18 29045412 29045412 C A DSG3 Missense_Mutation p.A468D 0.08 deleterious(0) probably_damaging(0.952) TCGA-ER-A19S-06 18 29056200 29056200 G A DSG3 Missense_Mutation p.D993N 0.14 tolerated(0.33) benign(0.143) TCGA-ER-A19S-06 18 8784400 8784400 C G SOGA2 Missense_Mutation p.S430R 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A19S-06 19 10930743 10930743 G A DNM2 Missense_Mutation p.A587T 0.12 deleterious(0.03) benign(0.338) TCGA-ER-A19S-06 19 12430489 12430489 G A ZNF563 Missense_Mutation p.S117F 0.14 deleterious(0.05) benign(0.039) TCGA-ER-A19S-06 19 15658923 15658923 G A CYP4F22 Missense_Mutation p.D381N 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 19 15852520 15852520 C T OR10H3 Silent p.F106F 0.15 TCGA-ER-A19S-06 19 16860799 16860799 G A NWD1 Missense_Mutation p.R449Q 0.22 tolerated(0.33) benign(0.014) TCGA-ER-A19S-06 19 16974538 16974538 C T SIN3B Silent p.S470S 0.15 TCGA-ER-A19S-06 19 17919051 17919051 C T B3GNT3 Silent p.F145F 0.20 TCGA-ER-A19S-06 19 18273926 18273926 G T PIK3R2 Missense_Mutation p.R420L 0.14 deleterious(0.01) benign(0.067) TCGA-ER-A19S-06 19 30936168 30936168 G A ZNF536 Missense_Mutation p.V567M 0.11 deleterious(0.05) benign(0.041) TCGA-ER-A19S-06 19 32923671 32923671 C T DPY19L3 Missense_Mutation p.S96F 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A19S-06 19 36349760 36349760 C T KIRREL2 Silent p.F172F 0.15 TCGA-ER-A19S-06 19 40901920 40901920 G A PRX Missense_Mutation p.P780L 0.09 deleterious(0) possibly_damaging(0.859) TCGA-ER-A19S-06 19 44492677 44492677 C T ZNF155 5'UTR 0.23 TCGA-ER-A19S-06 19 44513269 44513269 G A ZNF230 Missense_Mutation p.R59K 0.15 tolerated(0.15) benign(0.011) TCGA-ER-A19S-06 19 53572368 53572368 G A ZNF160 Silent p.V473V 0.14 TCGA-ER-A19S-06 19 56220214 56220214 A G NLRP9 3'UTR 0.15 TCGA-ER-A19S-06 19 56419221 56419221 C T NLRP13 Missense_Mutation p.G795E 0.10 deleterious(0.01) benign(0.104) TCGA-ER-A19S-06 19 9089206 9089206 G A MUC16 Missense_Mutation p.S870L 0.10 unknown(0) TCGA-ER-A19S-06 1 103470043 103470043 C T COL11A1 Missense_Mutation p.G634E 0.17 unknown(0) TCGA-ER-A19S-06 1 11562914 11562914 G A PTCHD2 Missense_Mutation p.V426M 0.13 deleterious(0) probably_damaging(0.957) TCGA-ER-A19S-06 1 117635466 117635466 C T TTF2 Silent p.S973S 0.16 TCGA-ER-A19S-06 1 11907371 11907371 C G NPPA Missense_Mutation p.W83C 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A19S-06 1 11907372 11907372 C T NPPA Nonsense_Mutation p.W83* 0.14 TCGA-ER-A19S-06 1 12921089 12921089 C T PRAMEF2 Missense_Mutation p.P294S 0.14 tolerated(0.13) benign(0.046) TCGA-ER-A19S-06 1 157062688 157062688 G A ETV3L Missense_Mutation p.A280V 0.22 deleterious(0.01) benign(0.025) TCGA-ER-A19S-06 1 158299174 158299174 A T CD1B Missense_Mutation p.I291N 0.09 deleterious(0) probably_damaging(0.995) TCGA-ER-A19S-06 1 158618307 158618307 C T SPTA1 Missense_Mutation p.G1236R 0.19 tolerated(0.07) benign(0.29) TCGA-ER-A19S-06 1 169541540 169541540 T C F5 Missense_Mutation p.I98V 0.14 tolerated(0.19) benign(0.003) TCGA-ER-A19S-06 1 173450482 173450482 C T PRDX6 Missense_Mutation p.S38F 0.22 deleterious(0) probably_damaging(0.995) TCGA-ER-A19S-06 1 17395641 17395641 G A PADI2 Silent p.I632I 0.20 TCGA-ER-A19S-06 1 177249597 177249597 G A BRINP2 Missense_Mutation p.E429K 0.14 deleterious(0.01) possibly_damaging(0.664) TCGA-ER-A19S-06 1 179041234 179041234 G A FAM20B Missense_Mutation p.M395I 0.23 tolerated(0.22) benign(0.001) TCGA-ER-A19S-06 1 202287116 202287116 G A LGR6 Nonsense_Mutation p.W562* 0.14 TCGA-ER-A19S-06 1 215844631 215844631 C T USH2A Missense_Mutation p.E4606K 0.21 probably_damaging(0.988) TCGA-ER-A19S-06 1 230845971 230845971 A G AGT Missense_Mutation p.V209A 0.14 deleterious(0.01) possibly_damaging(0.866) TCGA-ER-A19S-06 1 245180564 245180564 C T EFCAB2 Missense_Mutation p.H16Y 0.10 deleterious(0) possibly_damaging(0.622) TCGA-ER-A19S-06 1 247202174 247202174 T G ZNF670 Splice_Site p.X44_splice 0.12 TCGA-ER-A19S-06 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.14 deleterious(0.04) benign(0.335) TCGA-ER-A19S-06 1 248366969 248366969 C T OR2M3 Silent p.F200F 0.11 TCGA-ER-A19S-06 1 2530140 2530140 G A MMEL1 Silent p.I377I 0.22 TCGA-ER-A19S-06 1 7725032 7725032 G A CAMTA1 Missense_Mutation p.G809R 0.13 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-ER-A19S-06 1 7725033 7725033 G A CAMTA1 Missense_Mutation p.G809E 0.13 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-ER-A19S-06 1 8395589 8395589 C T SLC45A1 Silent p.L512L 0.21 TCGA-ER-A19S-06 1 90473104 90473104 C T ZNF326 Missense_Mutation p.S137F 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-ER-A19S-06 1 9713874 9713874 G T C1orf200 Missense_Mutation p.T156N 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-ER-A19S-06 20 23966723 23966723 G A GGTLC1 Silent p.F98F 0.17 TCGA-ER-A19S-06 20 33719456 33719456 G A EDEM2 Missense_Mutation p.A278V 0.25 tolerated(0.22) benign(0.026) TCGA-ER-A19S-06 20 34025293 34025293 G A GDF5 Missense_Mutation p.S139F 0.06 deleterious(0.02) benign(0.135) TCGA-ER-A19S-06 20 9525129 9525129 C T PAK7 Missense_Mutation p.D586N 0.12 deleterious(0) probably_damaging(0.99) TCGA-ER-A19S-06 20 9624918 9624918 C T PAK7 Missense_Mutation p.R20K 0.16 deleterious(0) probably_damaging(0.987) TCGA-ER-A19S-06 21 19744601 19744601 A G TMPRSS15 Silent p.C191C 0.14 TCGA-ER-A19S-06 21 27071113 27071113 C T JAM2 Silent p.I173I 0.24 TCGA-ER-A19S-06 21 27840924 27840924 C T CYYR1 Missense_Mutation p.E121K 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-ER-A19S-06 21 31654711 31654711 A C KRTAP24-1 Missense_Mutation p.N180K 0.06 tolerated(0.15) probably_damaging(0.913) TCGA-ER-A19S-06 21 45681060 45681060 G A DNMT3L Missense_Mutation p.S28F 0.09 deleterious(0.03) benign(0.06) TCGA-ER-A19S-06 21 46047895 46047895 C T KRTAP10-9 Silent p.S269S 0.20 TCGA-ER-A19S-06 21 46057780 46057780 C T KRTAP10-10 Missense_Mutation p.P149L 0.18 deleterious(0) probably_damaging(0.932) TCGA-ER-A19S-06 22 22550546 22550546 C T IGLV6-57 Missense_Mutation p.P75S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-ER-A19S-06 22 36587781 36587781 A C APOL4 Missense_Mutation p.I132S 0.11 deleterious(0) probably_damaging(0.991) TCGA-ER-A19S-06 22 46657852 46657852 G A PKDREJ Silent p.A456A 0.08 TCGA-ER-A19S-06 22 46658278 46658278 C T PKDREJ Silent p.G314G 0.05 TCGA-ER-A19S-06 2 116572408 116572408 C T DPP10 Silent p.F584F 0.07 TCGA-ER-A19S-06 2 166019265 166019265 G A SCN3A Silent p.F256F 0.07 TCGA-ER-A19S-06 2 166533019 166533019 C T CSRNP3 Silent p.L202L 0.24 TCGA-ER-A19S-06 2 166533020 166533020 C T CSRNP3 Nonsense_Mutation p.R203* 0.24 TCGA-ER-A19S-06 2 198257122 198257122 T A SF3B1 Missense_Mutation p.I1274F 0.09 deleterious(0) possibly_damaging(0.835) TCGA-ER-A19S-06 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 2 201488594 201488594 T G AOX1 Missense_Mutation p.V671G 0.06 deleterious(0) probably_damaging(0.939) TCGA-ER-A19S-06 2 21229951 21229951 G A APOB Silent p.F3263F 0.22 TCGA-ER-A19S-06 2 233321104 233321104 C T ALPI Missense_Mutation p.A38V 0.32 tolerated(0.05) benign(0.011) TCGA-ER-A19S-06 2 238280938 238280938 G A COL6A3 Missense_Mutation p.S1241F 0.22 probably_damaging(1) TCGA-ER-A19S-06 2 241808729 241808729 G A AGXT Missense_Mutation p.G103E 0.05 deleterious(0.03) probably_damaging(0.975) TCGA-ER-A19S-06 2 27565723 27565723 C T GTF3C2 Missense_Mutation p.G180E 0.12 deleterious(0) probably_damaging(0.974) TCGA-ER-A19S-06 2 48873824 48873824 G A STON1-GTF2A1L Silent p.R911R 0.13 TCGA-ER-A19S-06 2 50765512 50765512 C T NRXN1 Silent p.K714K 0.24 TCGA-ER-A19S-06 2 54159155 54159155 C T PSME4 Nonsense_Mutation p.W378* 0.08 TCGA-ER-A19S-06 2 76975989 76975989 G A LRRTM4 Silent p.I535I 0.09 TCGA-ER-A19S-06 2 84784883 84784883 C T DNAH6 Missense_Mutation p.H543Y 0.11 tolerated(0.37) benign(0) TCGA-ER-A19S-06 3 111426861 111426861 C T PLCXD2 Silent p.I84I 0.14 TCGA-ER-A19S-06 3 113145025 113145025 G A WDR52 Missense_Mutation p.S118L 0.07 deleterious(0.01) benign(0.002) TCGA-ER-A19S-06 3 119305195 119305195 C T ADPRH Missense_Mutation p.P121L 0.13 deleterious(0.01) benign(0.211) TCGA-ER-A19S-06 3 122634365 122634365 C T SEMA5B Missense_Mutation p.R691Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-ER-A19S-06 3 124826579 124826579 C T SLC12A8 Missense_Mutation p.R484K 0.12 tolerated(0.94) benign(0.028) TCGA-ER-A19S-06 3 128758606 128758606 C T EFCC1 Missense_Mutation p.A571V 0.16 tolerated(0.14) benign(0.191) TCGA-ER-A19S-06 3 129695631 129695631 G A TRH Missense_Mutation p.E101K 0.11 tolerated(0.06) possibly_damaging(0.543) TCGA-ER-A19S-06 3 133894462 133894462 A T RYK Silent p.A523A 0.14 TCGA-ER-A19S-06 3 140407068 140407068 T C TRIM42 Missense_Mutation p.M515T 0.21 deleterious(0.03) probably_damaging(0.94) TCGA-ER-A19S-06 3 161214732 161214732 C T OTOL1 Missense_Mutation p.P46L 0.21 tolerated(0.69) unknown(0) TCGA-ER-A19S-06 3 190282125 190282125 T G IL1RAP Missense_Mutation p.L16R 0.13 tolerated(0.2) benign(0.007) TCGA-ER-A19S-06 3 195710983 195710983 C T SDHAP1 Intron 0.20 TCGA-ER-A19S-06 3 38962691 38962691 C T SCN11A Silent p.V256V 0.32 TCGA-ER-A19S-06 3 38991760 38991760 C T SCN11A Missense_Mutation p.A32T 0.31 deleterious(0.04) benign(0.008) TCGA-ER-A19S-06 3 51370636 51370636 C T DOCK3 Missense_Mutation p.S1188F 0.27 deleterious(0) probably_damaging(0.998) TCGA-ER-A19S-06 3 52325072 52325072 C T GLYCTK Silent p.I158I 0.25 TCGA-ER-A19S-06 3 52327144 52327144 G A GLYCTK 3'UTR 0.45 TCGA-ER-A19S-06 3 72881533 72881533 G A SHQ1 Missense_Mutation p.P196S 0.27 tolerated(0.15) benign(0.009) TCGA-ER-A19S-06 4 147724715 147724715 C T TTC29 Missense_Mutation p.M408I 0.16 tolerated(0.15) benign(0.003) TCGA-ER-A19S-06 4 189068515 189068515 A T TRIML1 Missense_Mutation p.S466C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-ER-A19S-06 4 22737622 22737622 G A GBA3 Missense_Mutation p.G26E 0.20 deleterious(0.01) probably_damaging(0.937) TCGA-ER-A19S-06 4 25314427 25314427 G A ZCCHC4 5'UTR 0.15 TCGA-ER-A19S-06 4 70146414 70146414 C T UGT2B28 Missense_Mutation p.P66S 0.11 tolerated(0.3) benign(0.052) TCGA-ER-A19S-06 4 9982236 9982236 G A SLC2A9 Silent p.L221L 0.09 TCGA-ER-A19S-06 5 129040065 129040065 G A ADAMTS19 Missense_Mutation p.R1092Q 0.16 tolerated(0.16) probably_damaging(0.971) TCGA-ER-A19S-06 5 135583221 135583221 C T TRPC7 Missense_Mutation p.M594I 0.15 tolerated(0.07) possibly_damaging(0.771) TCGA-ER-A19S-06 5 137589782 137589782 G A GFRA3 Nonsense_Mutation p.Q285* 0.13 TCGA-ER-A19S-06 5 13766229 13766229 G A DNAH5 Silent p.I3319I 0.11 TCGA-ER-A19S-06 5 140221951 140221951 G A PCDHA8 Missense_Mutation p.E349K 0.10 deleterious_low_confidence(0.05) benign(0.018) TCGA-ER-A19S-06 5 140229061 140229061 C T PCDHA9 Silent p.F327F 0.20 TCGA-ER-A19S-06 5 140235641 140235641 C T PCDHA10 Missense_Mutation p.S3F 0.12 tolerated_low_confidence(0.28) benign(0) TCGA-ER-A19S-06 5 140730873 140730873 C T PCDHGB1 Missense_Mutation p.S349F 0.37 tolerated(0.61) benign(0.013) TCGA-ER-A19S-06 5 140769554 140769554 C T PCDHGB4 Silent p.F701F 0.05 TCGA-ER-A19S-06 5 156665145 156665145 G A ITK Silent p.R265R 0.13 TCGA-ER-A19S-06 5 161300147 161300147 C T GABRA1 Missense_Mutation p.R94C 0.11 deleterious(0) possibly_damaging(0.871) TCGA-ER-A19S-06 5 35691304 35691304 T C SPEF2 Silent p.L564L 0.14 TCGA-ER-A19S-06 5 39377033 39377033 G A DAB2 Missense_Mutation p.P619L 0.13 deleterious(0.04) benign(0.259) TCGA-ER-A19S-06 5 446415 446415 A T EXOC3 Missense_Mutation p.Y32F 0.09 deleterious(0.03) possibly_damaging(0.899) TCGA-ER-A19S-06 5 72179020 72179021 - A TNPO1 Frame_Shift_Ins p.I372Nfs*2 0.15 TCGA-ER-A19S-06 5 73931666 73931666 A G ENC1 Silent p.I215I 0.08 TCGA-ER-A19S-06 5 76331408 76331408 A C AGGF1 Missense_Mutation p.N119T 0.15 tolerated(0.16) benign(0.08) TCGA-ER-A19S-06 5 79351609 79351609 C T THBS4 Silent p.A98A 0.19 TCGA-ER-A19S-06 6 100390835 100390835 C T MCHR2 Missense_Mutation p.D193N 0.29 deleterious(0.03) benign(0.045) TCGA-ER-A19S-06 6 114378655 114378655 C T HS3ST5 Silent p.V269V 0.20 TCGA-ER-A19S-06 6 117609820 117609820 G A ROS1 Silent p.G2293G 0.22 TCGA-ER-A19S-06 6 128135008 128135008 C T THEMIS Missense_Mutation p.D260N 0.12 tolerated(0.14) benign(0.327) TCGA-ER-A19S-06 6 129571261 129571261 C T LAMA2 Missense_Mutation p.P596L 0.09 tolerated(0.1) benign(0.001) TCGA-ER-A19S-06 6 137193340 137193340 C T PEX7 Missense_Mutation p.S251L 0.10 deleterious(0) probably_damaging(0.969) TCGA-ER-A19S-06 6 138634957 138634957 C T KIAA1244 Missense_Mutation p.P1409L 0.15 deleterious(0) possibly_damaging(0.77) TCGA-ER-A19S-06 6 26027399 26027399 G T HIST1H4B Missense_Mutation p.Q28K 0.13 tolerated(0.06) benign(0.057) TCGA-ER-A19S-06 6 31084379 31084379 G A CDSN Missense_Mutation p.S338F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19S-06 6 31827574 31827574 G A NEU1 Silent p.Y390Y 0.06 TCGA-ER-A19S-06 6 32188538 32188538 C T NOTCH4 Nonsense_Mutation p.W306* 0.29 TCGA-ER-A19S-06 6 36336840 36336840 G A ETV7 Silent p.L225L 0.08 TCGA-ER-A19S-06 6 36564672 36564672 C T SRSF3 Missense_Mutation p.P45S 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 6 43250473 43250473 C T TTBK1 Silent p.S665S 0.14 TCGA-ER-A19S-06 6 43306850 43306850 T G ZNF318 Missense_Mutation p.Q1629P 0.29 benign(0.009) TCGA-ER-A19S-06 6 55145222 55145222 T G HCRTR2 Missense_Mutation p.I362S 0.12 deleterious(0) probably_damaging(0.978) TCGA-ER-A19S-06 6 55378900 55378900 C T HMGCLL1 Missense_Mutation p.G193E 0.21 tolerated(1) benign(0.001) TCGA-ER-A19S-06 6 7230144 7230144 C T RREB1 Silent p.A604A 0.32 TCGA-ER-A19S-06 6 72806812 72806812 C T RIMS1 Missense_Mutation p.R136C 0.25 deleterious(0) benign(0.391) TCGA-ER-A19S-06 6 87726203 87726203 G A HTR1E 3'UTR 0.32 TCGA-ER-A19S-06 7 100771930 100771930 G A SERPINE1 Missense_Mutation p.G86R 0.12 tolerated(1) benign(0.059) TCGA-ER-A19S-06 7 139416420 139416420 G A HIPK2 Silent p.I138I 0.22 TCGA-ER-A19S-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-ER-A19S-06 7 142104332 142104332 C T TRBV6-9 Missense_Mutation p.D45N 0.34 tolerated(0.39) benign(0.027) TCGA-ER-A19S-06 7 142168459 142168459 G A TRBV5-4 Silent p.F88F 0.12 TCGA-ER-A19S-06 7 142180696 142180696 G A TRBV6-5 Nonsense_Mutation p.R55* 0.07 TCGA-ER-A19S-06 7 142423623 142423623 C T TRBV27 Silent p.F93F 0.11 TCGA-ER-A19S-06 7 142750017 142750017 G A OR6V1 Missense_Mutation p.E194K 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-ER-A19S-06 7 156971527 156971527 A G UBE3C Missense_Mutation p.Y201C 0.12 deleterious(0) probably_damaging(0.933) TCGA-ER-A19S-06 7 16823228 16823228 C T TSPAN13 3'UTR 0.14 TCGA-ER-A19S-06 7 55214414 55214414 C T EGFR Silent p.F180F 0.12 TCGA-ER-A19S-06 7 590187 590187 C T PRKAR1B Silent p.R342R 0.19 TCGA-ER-A19S-06 7 82784272 82784272 C T PCLO Missense_Mutation p.G562E 0.18 unknown(0) TCGA-ER-A19S-06 7 92761935 92761935 G A SAMD9L Missense_Mutation p.S1117F 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A19S-06 7 92861654 92861654 G A CCDC132 5'UTR 0.31 TCGA-ER-A19S-06 7 99786085 99786085 C T STAG3 Missense_Mutation p.T148I 0.11 deleterious(0) probably_damaging(0.997) TCGA-ER-A19S-06 8 101625250 101625250 G A SNX31 Missense_Mutation p.R166W 0.15 deleterious(0) possibly_damaging(0.841) TCGA-ER-A19S-06 8 116427011 116427011 T A TRPS1 Missense_Mutation p.H1042L 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A19S-06 8 121061853 121061853 C T DEPTOR Silent p.V380V 0.21 TCGA-ER-A19S-06 8 125052167 125052167 G A FER1L6 Missense_Mutation p.G837S 0.13 tolerated(0.76) benign(0.211) TCGA-ER-A19S-06 8 141799613 141799613 G A PTK2 Silent p.S379S 0.06 TCGA-ER-A19S-06 8 144332571 144332571 C T ZFP41 Silent p.L186L 0.22 TCGA-ER-A19S-06 8 17407830 17407830 G A SLC7A2 Missense_Mutation p.G280E 0.34 tolerated(1) benign(0.013) TCGA-ER-A19S-06 8 38277177 38277177 G A FGFR1 Silent p.L417L 0.08 TCGA-ER-A19S-06 8 42012230 42012230 A T AP3M2 Missense_Mutation p.N9Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-ER-A19S-06 8 61743013 61743013 C T CHD7 Nonsense_Mutation p.R1219* 0.07 TCGA-ER-A19S-06 8 66631584 66631584 T C PDE7A Missense_Mutation p.T464A 0.15 tolerated(0.56) benign(0) TCGA-ER-A19S-06 8 91029366 91029366 G A DECR1 Silent p.G28G 0.12 TCGA-ER-A19S-06 9 107361332 107361332 G A OR13C5 Silent p.D121D 0.16 TCGA-ER-A19S-06 9 116967419 116967419 G A COL27A1 Missense_Mutation p.G721E 0.13 unknown(0) TCGA-ER-A19S-06 9 120475753 120475753 C T TLR4 Silent p.L449L 0.25 TCGA-ER-A19S-06 9 135940463 135940463 G A CEL Missense_Mutation p.G129E 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A19S-06 9 140289810 140289810 C G EXD3 5'UTR 0.15 TCGA-ER-A19S-06 9 23692808 23692808 C T ELAVL2 Nonsense_Mutation p.W276* 0.23 TCGA-ER-A19S-06 9 34993368 34993368 G A DNAJB5 Silent p.K160K 0.11 TCGA-ER-A19S-06 9 72938433 72938433 G A SMC5 Missense_Mutation p.E729K 0.15 tolerated(0.23) benign(0.267) TCGA-ER-A19S-06 X 100117282 100117282 G A NOX1 Missense_Mutation p.R228W 0.10 deleterious(0.02) benign(0.082) TCGA-ER-A19S-06 X 102962405 102962405 C G GLRA4 Missense_Mutation p.R374P 0.16 tolerated_low_confidence(0.41) benign(0.001) TCGA-ER-A19S-06 X 105142616 105142616 G A NRK Missense_Mutation p.G207E 0.47 deleterious(0) probably_damaging(0.996) TCGA-ER-A19S-06 X 106198237 106198237 G A MORC4 Missense_Mutation p.H531Y 0.10 deleterious(0.04) benign(0.007) TCGA-ER-A19S-06 X 117762225 117762225 C T DOCK11 Missense_Mutation p.T1255I 0.07 tolerated(0.2) benign(0) TCGA-ER-A19S-06 X 118603857 118603857 G A SLC25A5 Silent p.G115G 0.09 TCGA-ER-A19S-06 X 128914113 128914113 C T SASH3 Missense_Mutation p.P14S 0.17 tolerated(0.13) possibly_damaging(0.454) TCGA-ER-A19S-06 X 130416530 130416530 G A IGSF1 Silent p.F378F 0.28 TCGA-ER-A19S-06 X 130419329 130419329 A C IGSF1 Missense_Mutation p.F164C 0.09 deleterious(0.04) probably_damaging(0.919) TCGA-ER-A19S-06 X 132445387 132445387 C G GPC4 Missense_Mutation p.G259A 0.07 deleterious(0) probably_damaging(0.999) TCGA-ER-A19S-06 X 135431958 135431958 T C GPR112 Silent p.T2031T 0.20 TCGA-ER-A19S-06 X 140996272 140996272 G A MAGEC1 Missense_Mutation p.V1028M 0.08 deleterious(0) unknown(0) TCGA-ER-A19S-06 X 150773145 150773145 G A PASD1 Missense_Mutation p.R19K 0.12 tolerated(0.26) benign(0.008) TCGA-ER-A19S-06 X 151869816 151869816 T G MAGEA6 Missense_Mutation p.V169G 0.09 deleterious(0.02) possibly_damaging(0.896) TCGA-ER-A19S-06 X 152818565 152818565 G A ATP2B3 Silent p.R632R 0.11 TCGA-ER-A19S-06 X 17819691 17819691 G A RAI2 Missense_Mutation p.S147F 0.09 deleterious(0) probably_damaging(0.989) TCGA-ER-A19S-06 X 18775836 18775836 C T PPEF1 Missense_Mutation p.P163L 0.11 tolerated(0.37) benign(0.002) TCGA-ER-A19S-06 X 26157909 26157909 C T MAGEB18 Silent p.F269F 0.24 TCGA-ER-A19S-06 X 34148281 34148281 C T FAM47A Nonsense_Mutation p.W705* 0.13 TCGA-ER-A19S-06 X 35820609 35820609 C T MAGEB16 Missense_Mutation p.S99L 0.19 tolerated(0.2) benign(0.024) TCGA-ER-A19S-06 X 46887370 46887370 C T JADE3 Silent p.N184N 0.16 TCGA-ER-A19S-06 X 49773055 49773055 C T CLCN5 Intron 0.06 TCGA-ER-A19S-06 X 52825449 52825449 C T SPANXN5 3'UTR 0.14 TCGA-ER-A19S-06 X 53114505 53114505 T G TSPYL2 Splice_Site p.X413_splice 0.14 TCGA-ER-A19S-06 X 53585694 53585694 C T HUWE1 Silent p.R2694R 0.08 TCGA-ER-A19S-06 X 53642794 53642794 C T HUWE1 Missense_Mutation p.D654N 0.23 probably_damaging(0.999) TCGA-ER-A19S-06 X 70348270 70348270 G A MED12 Missense_Mutation p.D1112N 0.04 probably_damaging(0.994) TCGA-ER-A19S-06 X 77264757 77264757 T G ATP7A Missense_Mutation p.I622M 0.08 deleterious(0) probably_damaging(0.909) TCGA-ER-A19S-06 X 79286459 79286459 C T TBX22 Missense_Mutation p.S471F 0.24 deleterious(0) possibly_damaging(0.867) TCGA-ER-A19T-01 10 114136062 114136062 G A ACSL5 5'UTR 0.23 TCGA-ER-A19T-01 10 64967657 64967657 T C JMJD1C Missense_Mutation p.K1258E 0.28 deleterious(0) probably_damaging(0.998) TCGA-ER-A19T-01 11 197726 197726 G A ODF3 Missense_Mutation p.R92H 0.46 deleterious(0.03) probably_damaging(1) TCGA-ER-A19T-01 11 64132815 64132815 C T RPS6KA4 Missense_Mutation p.P317S 0.29 deleterious(0) probably_damaging(0.988) TCGA-ER-A19T-01 12 4460443 4460443 T C C12orf5 Missense_Mutation p.V94A 0.31 tolerated(0.11) benign(0.114) TCGA-ER-A19T-01 12 52164343 52164343 T A SCN8A Missense_Mutation p.V1174D 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-ER-A19T-01 13 73350130 73350130 C G DIS3 Missense_Mutation p.R252T 0.95 tolerated(0.48) benign(0.017) TCGA-ER-A19T-01 15 75093892 75093892 G A CSK Silent p.R281R 0.15 TCGA-ER-A19T-01 16 81320964 81320964 C G BCMO1 Missense_Mutation p.A456G 0.42 deleterious(0.02) benign(0.145) TCGA-ER-A19T-01 17 26495492 26495492 G C NLK Missense_Mutation p.A286P 0.11 deleterious(0) probably_damaging(0.998) TCGA-ER-A19T-01 17 30814630 30814630 A T CDK5R1 5'UTR 0.47 TCGA-ER-A19T-01 17 56247914 56247914 A G OR4D2 Missense_Mutation p.R300G 0.18 deleterious(0) possibly_damaging(0.616) TCGA-ER-A19T-01 17 67008186 67008186 G T ABCA9 Silent p.T1026T 0.27 TCGA-ER-A19T-01 18 29111149 29111149 G C DSG2 Missense_Mutation p.S405T 0.20 tolerated(0.18) probably_damaging(0.97) TCGA-ER-A19T-01 18 43458346 43458346 G A EPG5 Silent p.N1979N 0.23 TCGA-ER-A19T-01 19 36259128 36259128 C T C19orf55 3'UTR 0.08 TCGA-ER-A19T-01 19 36259548 36259548 C T C19orf55 3'UTR 0.34 TCGA-ER-A19T-01 19 36605705 36605705 C G POLR2I Missense_Mutation p.Q18H 0.22 tolerated(0.11) possibly_damaging(0.764) TCGA-ER-A19T-01 19 50548418 50548418 C G ZNF473 Missense_Mutation p.Q240E 0.18 tolerated(0.23) benign(0.217) TCGA-ER-A19T-01 19 55112268 55112268 C G LILRA1 Missense_Mutation p.Q486E 0.17 deleterious(0.03) benign(0.359) TCGA-ER-A19T-01 19 55495050 55495050 C A NLRP2 Missense_Mutation p.L662I 0.51 deleterious(0.01) benign(0.184) TCGA-ER-A19T-01 19 55597520 55597520 G A EPS8L1 Missense_Mutation p.G537E 0.12 tolerated(0.27) possibly_damaging(0.448) TCGA-ER-A19T-01 19 58213208 58213208 G A ZNF154 Missense_Mutation p.S370F 0.26 tolerated(0.12) benign(0.043) TCGA-ER-A19T-01 19 9204196 9204196 C T OR1M1 Silent p.I92I 0.10 TCGA-ER-A19T-01 19 9204217 9204217 C T OR1M1 Silent p.I99I 0.09 TCGA-ER-A19T-01 19 9204595 9204595 C T OR1M1 Silent p.I225I 0.16 TCGA-ER-A19T-01 19 9204670 9204670 C A OR1M1 Silent p.L250L 0.14 TCGA-ER-A19T-01 19 9204673 9204673 C T OR1M1 Silent p.F251F 0.14 TCGA-ER-A19T-01 19 9492486 9492486 G C ZNF177 3'UTR 0.21 TCGA-ER-A19T-01 1 1309511 1309511 G A AURKAIP1 Missense_Mutation p.P123S 0.16 tolerated(0.2) benign(0.051) TCGA-ER-A19T-01 1 151162617 151162617 C T VPS72 5'UTR 0.12 TCGA-ER-A19T-01 1 190195425 190195425 A C BRINP3 Missense_Mutation p.Y250D 0.13 deleterious(0) possibly_damaging(0.768) TCGA-ER-A19T-01 1 209974733 209974733 C T IRF6 Missense_Mutation p.R9Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A19T-01 1 226055681 226055681 A T TMEM63A Missense_Mutation p.S141T 0.21 tolerated(0.15) benign(0.124) TCGA-ER-A19T-01 1 46659141 46659141 C T POMGNT1 Intron 0.48 TCGA-ER-A19T-01 20 22564860 22564860 G A FOXA2 Silent p.S19S 0.27 TCGA-ER-A19T-01 20 62871203 62871203 G A MYT1 Missense_Mutation p.G1062S 0.08 probably_damaging(0.999) TCGA-ER-A19T-01 22 21141316 21141316 C G SERPIND1 Missense_Mutation p.L488V 0.44 tolerated(0.18) benign(0.147) TCGA-ER-A19T-01 22 39387336 39387336 G A APOBEC3B Splice_Site p.X242_splice 0.14 TCGA-ER-A19T-01 22 45316306 45316306 G A PHF21B Missense_Mutation p.A62V 0.09 deleterious_low_confidence(0.03) benign(0.098) TCGA-ER-A19T-01 2 149247723 149247723 A C MBD5 Missense_Mutation p.S1275R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-ER-A19T-01 2 220354563 220354563 C T SPEG Silent p.S2941S 0.34 TCGA-ER-A19T-01 2 40342620 40342620 G C SLC8A1 Missense_Mutation p.Q899E 0.22 tolerated(1) benign(0.001) TCGA-ER-A19T-01 2 98421906 98421906 G A TMEM131 Silent p.N739N 0.29 TCGA-ER-A19T-01 3 169831280 169831280 G A PHC3 Nonsense_Mutation p.Q741* 0.20 TCGA-ER-A19T-01 3 195515876 195515876 C G MUC4 Missense_Mutation p.V859L 0.28 unknown(0) TCGA-ER-A19T-01 3 49137495 49137495 G A QARS Silent p.G398G 0.30 TCGA-ER-A19T-01 3 51677967 51677967 C T RAD54L2 Silent p.T809T 0.23 TCGA-ER-A19T-01 5 118464914 118464914 C G DMXL1 Missense_Mutation p.L371V 0.24 deleterious(0.03) possibly_damaging(0.859) TCGA-ER-A19T-01 5 140501880 140501880 G A PCDHB4 Silent p.P100P 0.25 TCGA-ER-A19T-01 5 140764356 140764356 G A PCDHGA7 Silent p.R630R 0.35 TCGA-ER-A19T-01 5 153085596 153085596 T G GRIA1 Missense_Mutation p.F608V 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A19T-01 5 169018183 169018183 A G SPDL1 Silent p.Q97Q 0.21 TCGA-ER-A19T-01 5 179036445 179036445 C A RUFY1 Silent p.S684S 0.12 TCGA-ER-A19T-01 5 33546309 33546309 T A ADAMTS12 Splice_Site p.X1435_splice 0.34 TCGA-ER-A19T-01 5 60369037 60369037 G A NDUFAF2 Nonsense_Mutation p.W71* 0.50 TCGA-ER-A19T-01 5 70888768 70888768 A G MCCC2 Missense_Mutation p.M49V 0.14 deleterious_low_confidence(0.01) benign(0.013) TCGA-ER-A19T-01 5 79615906 79615906 C A SPZ1 5'UTR 0.26 TCGA-ER-A19T-01 6 12162032 12162032 G T HIVEP1 Missense_Mutation p.R2283I 0.15 tolerated(0.1) benign(0.112) TCGA-ER-A19T-01 6 49754466 49754466 A T PGK2 Missense_Mutation p.D145E 0.48 tolerated(1) benign(0.004) TCGA-ER-A19T-01 7 137612996 137612996 C T CREB3L2 Silent p.P73P 0.58 TCGA-ER-A19T-01 7 15430341 15430341 A T AGMO Nonsense_Mutation p.Y259* 0.10 TCGA-ER-A19T-01 7 73254876 73254876 G A WBSCR27 Missense_Mutation p.R86W 0.29 deleterious(0.01) possibly_damaging(0.773) TCGA-ER-A19T-01 8 128750836 128750836 A T MYC Missense_Mutation p.M125L 0.13 tolerated(0.74) benign(0.026) TCGA-ER-A19T-01 8 99170218 99170218 G T POP1 Missense_Mutation p.A932S 0.33 tolerated(0.4) benign(0.006) TCGA-ER-A19T-01 9 100693159 100693159 G C HEMGN Missense_Mutation p.S173C 0.25 deleterious(0) possibly_damaging(0.557) TCGA-ER-A19T-01 9 101552847 101552847 C G ANKS6 Missense_Mutation p.G134A 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19T-01 9 95772662 95772662 G A FGD3 Silent p.A324A 0.22 TCGA-ER-A19T-01 X 152225755 152225755 C T PNMA3 Missense_Mutation p.R115W 0.53 deleterious(0.03) probably_damaging(0.988) TCGA-ER-A19T-01 X 50053973 50053973 A G CCNB3 Missense_Mutation p.E935G 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A19W-06 10 12131168 12131168 A G DHTKD1 Missense_Mutation p.T301A 0.24 tolerated(0.26) benign(0.405) TCGA-ER-A19W-06 10 121556316 121556316 T G INPP5F Missense_Mutation p.D253E 0.22 tolerated(0.21) benign(0.198) TCGA-ER-A19W-06 10 127426930 127426930 C T EDRF1 Missense_Mutation p.P633S 0.15 deleterious(0.01) possibly_damaging(0.732) TCGA-ER-A19W-06 10 133107522 133107522 G C TCERG1L Missense_Mutation p.P128R 0.23 deleterious(0) probably_damaging(0.998) TCGA-ER-A19W-06 10 135000048 135000048 C T KNDC1 Missense_Mutation p.S399L 0.17 tolerated(0.13) benign(0.003) TCGA-ER-A19W-06 10 135113536 135113536 G C TUBGCP2 Missense_Mutation p.L78V 0.26 tolerated(0.14) possibly_damaging(0.73) TCGA-ER-A19W-06 10 135123381 135123381 C T ZNF511 Missense_Mutation p.S110F 0.23 deleterious(0) benign(0.312) TCGA-ER-A19W-06 10 17110274 17110274 C T CUBN Missense_Mutation p.G933R 0.18 deleterious(0) benign(0.216) TCGA-ER-A19W-06 10 50723759 50723759 C A ERCC6-PGBD3 Nonsense_Mutation p.E936* 0.17 TCGA-ER-A19W-06 10 50723760 50723760 A C ERCC6-PGBD3 Missense_Mutation p.D935E 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-ER-A19W-06 10 62029979 62029979 G A ANK3 Silent p.F141F 0.25 TCGA-ER-A19W-06 10 63170480 63170480 G A TMEM26 Missense_Mutation p.S236F 0.25 deleterious(0.02) benign(0.06) TCGA-ER-A19W-06 10 75532996 75532996 C T FUT11 Missense_Mutation p.R253W 0.25 deleterious(0) probably_damaging(0.985) TCGA-ER-A19W-06 10 92679962 92679962 C T ANKRD1 Silent p.E57E 0.25 TCGA-ER-A19W-06 10 96106293 96106293 G A NOC3L Silent p.C426C 0.21 TCGA-ER-A19W-06 10 97976469 97976469 C T BLNK Missense_Mutation p.E183K 0.27 deleterious(0.03) benign(0.011) TCGA-ER-A19W-06 10 98325147 98325147 A G TM9SF3 Missense_Mutation p.L112S 0.22 deleterious(0) probably_damaging(0.965) TCGA-ER-A19W-06 10 99625209 99625209 C T CRTAC1 3'UTR 0.50 TCGA-ER-A19W-06 11 100211379 100211379 C T CNTN5 Missense_Mutation p.S972F 0.24 deleterious(0) benign(0.11) TCGA-ER-A19W-06 11 103070115 103070115 T C DYNC2H1 Silent p.S2666S 0.19 TCGA-ER-A19W-06 11 10585542 10585542 C T LYVE1 Silent p.L114L 0.15 TCGA-ER-A19W-06 11 110035855 110035855 A G ZC3H12C Missense_Mutation p.D682G 0.24 tolerated(0.09) possibly_damaging(0.574) TCGA-ER-A19W-06 11 124755021 124755021 C T ROBO4 Missense_Mutation p.G973R 0.26 tolerated(0.07) probably_damaging(0.953) TCGA-ER-A19W-06 11 125769315 125769315 G A HYLS1 Missense_Mutation p.E18K 0.29 deleterious(0.01) probably_damaging(0.968) TCGA-ER-A19W-06 11 134253824 134253824 G T B3GAT1 Missense_Mutation p.P124Q 0.45 tolerated(0.55) benign(0.012) TCGA-ER-A19W-06 11 16872782 16872782 G A PLEKHA7 Missense_Mutation p.P218S 0.20 tolerated(0.1) benign(0.03) TCGA-ER-A19W-06 11 18054898 18054898 G A TPH1 Missense_Mutation p.P109S 0.11 deleterious(0) probably_damaging(0.988) TCGA-ER-A19W-06 11 1858067 1858067 C T SYT8 Nonsense_Mutation p.R270* 0.20 TCGA-ER-A19W-06 11 2604736 2604736 C T KCNQ1 Silent p.C331C 0.22 TCGA-ER-A19W-06 11 30253555 30253555 C T FSHB Missense_Mutation p.R36C 0.13 deleterious(0.05) benign(0.44) TCGA-ER-A19W-06 11 32452088 32452088 C T WT1 Intron 0.12 TCGA-ER-A19W-06 11 45245887 45245887 G A PRDM11 Missense_Mutation p.D288N 0.16 deleterious(0) probably_damaging(0.944) TCGA-ER-A19W-06 11 4936151 4936151 G A OR51G2 Missense_Mutation p.S248F 0.17 deleterious(0) probably_damaging(0.962) TCGA-ER-A19W-06 11 51515383 51515383 C T OR4C46 Silent p.I34I 0.18 TCGA-ER-A19W-06 11 5528776 5528776 G A UBQLN3 3'UTR 0.12 TCGA-ER-A19W-06 11 55340089 55340089 G A OR4C16 Silent p.L162L 0.19 TCGA-ER-A19W-06 11 55418495 55418495 G A OR4S2 Missense_Mutation p.G39E 0.37 deleterious(0) possibly_damaging(0.907) TCGA-ER-A19W-06 11 55579480 55579480 G A OR5L1 Missense_Mutation p.D180N 0.16 deleterious(0) probably_damaging(0.986) TCGA-ER-A19W-06 11 5566278 5566278 C T OR52H1 Missense_Mutation p.R159Q 0.23 deleterious(0.02) benign(0.272) TCGA-ER-A19W-06 11 57982373 57982373 A G OR1S1 Missense_Mutation p.I53V 0.04 tolerated(0.43) benign(0) TCGA-ER-A19W-06 11 57982392 57982392 T C OR1S1 Missense_Mutation p.I59T 0.03 deleterious(0) possibly_damaging(0.844) TCGA-ER-A19W-06 11 58919841 58919841 T A FAM111A Missense_Mutation p.F234I 0.16 tolerated(0.15) benign(0.02) TCGA-ER-A19W-06 11 6245807 6245807 G A FAM160A2 5'UTR 0.14 TCGA-ER-A19W-06 11 64802570 64802570 C T SNX15 Silent p.L138L 0.11 TCGA-ER-A19W-06 11 65721163 65721163 G A TSGA10IP RNA 0.19 TCGA-ER-A19W-06 11 67942593 67942593 C T SUV420H1 Silent p.K145K 0.11 TCGA-ER-A19W-06 11 68517991 68517991 G A MTL5 Silent p.F46F 0.09 TCGA-ER-A19W-06 11 68855437 68855437 C T TPCN2 3'UTR 0.07 TCGA-ER-A19W-06 11 69933964 69933964 G A ANO1 Missense_Mutation p.R72K 0.23 tolerated(1) benign(0.002) TCGA-ER-A19W-06 11 69933965 69933965 G A ANO1 Silent p.R72R 0.23 TCGA-ER-A19W-06 11 71903276 71903276 G A FOLR1 Missense_Mutation p.G20E 0.22 tolerated(0.23) benign(0.007) TCGA-ER-A19W-06 11 72560874 72560874 C T FCHSD2 Missense_Mutation p.D457N 0.04 deleterious(0.01) possibly_damaging(0.874) TCGA-ER-A19W-06 11 74303630 74303630 G C POLD3 5'UTR 0.19 TCGA-ER-A19W-06 11 74303749 74303749 G A POLD3 Missense_Mutation p.D16N 0.14 deleterious(0) probably_damaging(0.975) TCGA-ER-A19W-06 11 75136525 75136525 C T KLHL35 Silent p.E429E 0.14 TCGA-ER-A19W-06 12 100041946 100041946 G A FAM71C 5'UTR 0.26 TCGA-ER-A19W-06 12 105446671 105446671 T G ALDH1L2 Silent p.P442P 0.13 TCGA-ER-A19W-06 12 109623477 109623477 C T ACACB Missense_Mutation p.P638S 0.12 tolerated(0.32) benign(0.036) TCGA-ER-A19W-06 12 10962520 10962520 G A TAS2R9 Missense_Mutation p.A52V 0.18 tolerated(0.06) probably_damaging(0.996) TCGA-ER-A19W-06 12 112622378 112622378 G A HECTD4 Silent p.P3318P 0.15 TCGA-ER-A19W-06 12 120195222 120195222 G A CIT Missense_Mutation p.H887Y 0.18 tolerated(0.3) benign(0.34) TCGA-ER-A19W-06 12 120195223 120195223 G A CIT Silent p.D886D 0.17 TCGA-ER-A19W-06 12 125432363 125432363 G C DHX37 Silent p.P1153P 0.13 TCGA-ER-A19W-06 12 18891541 18891541 G A CAPZA3 Silent p.E113E 0.15 TCGA-ER-A19W-06 12 3389554 3389554 G A TSPAN9 Missense_Mutation p.E113K 0.19 tolerated(0.39) benign(0.009) TCGA-ER-A19W-06 12 43896072 43896072 C T ADAMTS20 Silent p.R250R 0.15 TCGA-ER-A19W-06 12 51882514 51882514 A T SLC4A8 Missense_Mutation p.N773I 0.12 tolerated(0.3) possibly_damaging(0.636) TCGA-ER-A19W-06 12 54062946 54062946 G A ATP5G2 Silent p.I156I 0.16 TCGA-ER-A19W-06 12 56515462 56515462 A C ZC3H10 Silent p.T372T 0.23 TCGA-ER-A19W-06 12 58145431 58145431 G A CDK4 Missense_Mutation p.R24C 0.17 deleterious(0.02) benign(0.321) TCGA-ER-A19W-06 12 7173839 7173839 G A C1S Missense_Mutation p.E297K 0.06 tolerated(0.83) benign(0.026) TCGA-ER-A19W-06 12 7476955 7476955 C T ACSM4 Silent p.F465F 0.12 TCGA-ER-A19W-06 13 39622104 39622104 C T NHLRC3 3'UTR 0.11 TCGA-ER-A19W-06 13 46357800 46357800 C T SIAH3 Silent p.R176R 0.11 TCGA-ER-A19W-06 13 49096073 49096073 C T RCBTB2 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0.05) benign(0.001) TCGA-ER-A19W-06 13 86370194 86370194 C T SLITRK6 Silent p.V150V 0.18 TCGA-ER-A19W-06 13 95092199 95092199 G A DCT Silent p.L538L 0.10 TCGA-ER-A19W-06 13 95092200 95092200 G A DCT Silent p.P537P 0.11 TCGA-ER-A19W-06 13 99114081 99114081 G A STK24 Missense_Mutation p.P346S 0.10 tolerated(0.26) benign(0.001) TCGA-ER-A19W-06 14 103442332 103442332 G - CDC42BPB Frame_Shift_Del p.D427Mfs*31 0.18 TCGA-ER-A19W-06 14 105212583 105212583 G A ADSSL1 Silent p.E437E 0.22 TCGA-ER-A19W-06 14 20344598 20344598 C T OR4K2 Missense_Mutation p.P58S 0.08 deleterious(0) benign(0.057) TCGA-ER-A19W-06 14 20389642 20389642 G A OR4K5 Missense_Mutation p.D293N 0.11 deleterious(0.01) benign(0.018) TCGA-ER-A19W-06 14 23517518 23517518 G A CDH24 Missense_Mutation p.P711S 0.12 tolerated(0.66) benign(0.119) TCGA-ER-A19W-06 14 23890239 23890239 A C MYH7 Missense_Mutation p.N1088K 0.13 deleterious(0.01) benign(0.368) TCGA-ER-A19W-06 14 31642962 31642962 G A HECTD1 Silent p.T218T 0.25 TCGA-ER-A19W-06 14 38679830 38679830 G A SSTR1 3'UTR 0.13 TCGA-ER-A19W-06 14 64855044 64855044 C T MTHFD1 5'Flank 0.19 TCGA-ER-A19W-06 14 81297574 81297574 G A CEP128 Silent p.F374F 0.19 TCGA-ER-A19W-06 14 96783568 96783568 C T ATG2B Missense_Mutation p.D1042N 0.19 tolerated(0.08) possibly_damaging(0.549) TCGA-ER-A19W-06 15 20170158 20170158 C T IGHV1OR15-9 Silent p.R38R 0.20 TCGA-ER-A19W-06 15 22382583 22382583 C T OR4N4 Silent p.I37I 0.12 TCGA-ER-A19W-06 15 24921998 24921998 G A NPAP1 Silent p.R328R 0.16 TCGA-ER-A19W-06 15 25468313 25468313 C T SNORD115-27 3'Flank 0.22 TCGA-ER-A19W-06 15 38805075 38805075 C T RASGRP1 Missense_Mutation p.G253D 0.07 deleterious(0) probably_damaging(0.998) TCGA-ER-A19W-06 15 41476673 41476673 A T EXD1 Missense_Mutation p.V334E 0.21 tolerated(0.87) benign(0.004) TCGA-ER-A19W-06 15 43620829 43620829 G A LCMT2 Missense_Mutation p.T620I 0.19 tolerated(0.12) benign(0.011) TCGA-ER-A19W-06 15 44158595 44158595 T C WDR76 3'UTR 0.15 TCGA-ER-A19W-06 15 51514565 51514565 G A CYP19A1 Silent p.F203F 0.19 TCGA-ER-A19W-06 15 52901372 52901372 T G FAM214A Missense_Mutation p.H580P 0.07 tolerated(1) benign(0) TCGA-ER-A19W-06 15 55921022 55921022 T C PRTG Missense_Mutation p.K935R 0.10 tolerated(0.39) benign(0.001) TCGA-ER-A19W-06 15 65041230 65041230 G A RBPMS2 Silent p.A129A 0.20 TCGA-ER-A19W-06 15 65490046 65490046 G A CILP Missense_Mutation p.R860C 0.13 deleterious(0) probably_damaging(0.997) TCGA-ER-A19W-06 15 68061944 68061944 C T MAP2K5 Missense_Mutation p.S380L 0.18 deleterious(0.04) benign(0.129) TCGA-ER-A19W-06 15 68654004 68654004 G A ITGA11 Silent p.S132S 0.18 TCGA-ER-A19W-06 15 73615425 73615425 C T HCN4 Silent p.P1003P 0.30 TCGA-ER-A19W-06 15 74178926 74178926 C T TBC1D21 Silent p.S250S 0.12 TCGA-ER-A19W-06 15 78775756 78775756 C T IREB2 Nonsense_Mutation p.Q465* 0.14 TCGA-ER-A19W-06 16 10861804 10861804 A T NUBP1 Splice_Site p.X274_splice 0.24 TCGA-ER-A19W-06 16 16162102 16162102 C T ABCC1 Silent p.F589F 0.16 TCGA-ER-A19W-06 16 18603946 18603946 C T ABCC6P1 RNA 0.17 TCGA-ER-A19W-06 16 2153634 2153634 G A PKD1 Silent p.I2808I 0.15 TCGA-ER-A19W-06 16 2259598 2259598 C T BRICD5 Missense_Mutation p.R183H 0.18 tolerated(0.47) benign(0.002) TCGA-ER-A19W-06 16 24373007 24373007 C A CACNG3 Silent p.I257I 0.13 TCGA-ER-A19W-06 16 24373008 24373008 C T CACNG3 Missense_Mutation p.P258S 0.12 deleterious(0.02) possibly_damaging(0.493) TCGA-ER-A19W-06 16 24373009 24373009 C T CACNG3 Missense_Mutation p.P258L 0.12 deleterious(0) possibly_damaging(0.616) TCGA-ER-A19W-06 16 30581396 30581396 G A ZNF688 Silent p.F224F 0.33 TCGA-ER-A19W-06 16 3600430 3600430 C T NLRC3 Missense_Mutation p.G853S 0.09 tolerated(1) benign(0.014) TCGA-ER-A19W-06 16 46781686 46781686 G A MYLK3 Silent p.F140F 0.19 TCGA-ER-A19W-06 16 47732461 47732461 C T PHKB Nonsense_Mutation p.Q1036* 0.19 TCGA-ER-A19W-06 16 49764692 49764692 G A ZNF423 Silent p.R89R 0.14 TCGA-ER-A19W-06 16 56865818 56865818 G A NUP93 Missense_Mutation p.D384N 0.22 deleterious(0) probably_damaging(0.965) TCGA-ER-A19W-06 16 58030949 58030949 G A ZNF319 Silent p.G407G 0.20 TCGA-ER-A19W-06 16 58319857 58319857 C T PRSS54 Nonsense_Mutation p.W169* 0.27 TCGA-ER-A19W-06 16 75127483 75127483 C T ZNRF1 Silent p.P146P 0.23 TCGA-ER-A19W-06 16 84088076 84088076 G A MBTPS1 Missense_Mutation p.P1046L 0.15 tolerated_low_confidence(0.25) benign(0.012) TCGA-ER-A19W-06 16 88723977 88723977 G C MVD Silent p.A90A 0.26 TCGA-ER-A19W-06 16 88902635 88902635 C T GALNS Missense_Mutation p.A203T 0.20 tolerated(0.18) benign(0.145) TCGA-ER-A19W-06 17 10348141 10348141 C T MYH4 Missense_Mutation p.E1848K 0.17 deleterious(0) possibly_damaging(0.73) TCGA-ER-A19W-06 17 15457129 15457129 G A TVP23C-CDRT4 Missense_Mutation p.S37L 0.15 tolerated(0.16) benign(0.005) TCGA-ER-A19W-06 17 16467100 16467100 G A ZNF287 Nonsense_Mutation p.Q181* 0.17 TCGA-ER-A19W-06 17 17131214 17131214 C T FLCN Missense_Mutation p.D80N 0.18 deleterious(0.01) benign(0.138) TCGA-ER-A19W-06 17 26669339 26669339 C T TNFAIP1 Silent p.G195G 0.22 TCGA-ER-A19W-06 17 26862089 26862089 C T FOXN1 Silent p.S500S 0.10 TCGA-ER-A19W-06 17 27284993 27284993 C T SEZ6 Nonsense_Mutation p.W758* 0.20 TCGA-ER-A19W-06 17 33520547 33520547 C T SLC35G3 Silent p.G260G 0.17 TCGA-ER-A19W-06 17 34079561 34079561 G A GAS2L2 Silent p.A103A 0.14 TCGA-ER-A19W-06 17 34245299 34245299 G A RDM1 3'UTR 0.14 TCGA-ER-A19W-06 17 37687014 37687014 C T CDK12 Silent p.S1306S 0.07 TCGA-ER-A19W-06 17 38508701 38508701 C T RARA Missense_Mutation p.T250I 0.11 deleterious(0.04) possibly_damaging(0.501) TCGA-ER-A19W-06 17 39114841 39114841 C T KRT39 3'UTR 0.10 TCGA-ER-A19W-06 17 39642765 39642765 G A KRT36 Missense_Mutation p.P423S 0.30 tolerated(0.57) benign(0.001) TCGA-ER-A19W-06 17 39642766 39642766 G A KRT36 Silent p.V422V 0.30 TCGA-ER-A19W-06 17 42248282 42248282 C T ASB16 Missense_Mutation p.P42L 0.11 tolerated(0.37) benign(0.004) TCGA-ER-A19W-06 17 42824540 42824540 C T DBF4B Missense_Mutation p.A307V 0.29 tolerated(0.06) benign(0.056) TCGA-ER-A19W-06 17 4644970 4644970 G A ZMYND15 Missense_Mutation p.G229E 0.15 tolerated_low_confidence(0.15) benign(0.073) TCGA-ER-A19W-06 17 4647090 4647090 C G ZMYND15 Missense_Mutation p.D442E 0.16 tolerated(0.57) benign(0.08) TCGA-ER-A19W-06 17 4897699 4897699 G A INCA1 Missense_Mutation p.P12S 0.14 deleterious(0) probably_damaging(0.998) TCGA-ER-A19W-06 17 60689763 60689763 G A TLK2 Missense_Mutation p.R697Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-ER-A19W-06 17 65928106 65928106 T G BPTF Missense_Mutation p.I2077S 0.29 possibly_damaging(0.693) TCGA-ER-A19W-06 17 6616734 6616734 G A SLC13A5 5'UTR 0.30 TCGA-ER-A19W-06 17 67250604 67250606 TCT - ABCA5 In_Frame_Del p.E1365_T1366delinsA 0.14 TCGA-ER-A19W-06 17 73560629 73560629 G A LLGL2 Intron 0.15 TCGA-ER-A19W-06 17 73754178 73754178 G A GALK1 Missense_Mutation p.L380F 0.16 tolerated(0.08) benign(0.016) TCGA-ER-A19W-06 17 73836014 73836014 T A UNC13D Missense_Mutation p.T321S 0.14 tolerated(0.39) benign(0.009) TCGA-ER-A19W-06 17 76491047 76491047 C T DNAH17 Silent p.S1998S 0.19 TCGA-ER-A19W-06 17 7763015 7763015 G A CYB5D1 3'UTR 0.24 TCGA-ER-A19W-06 17 8732109 8732109 C T PIK3R6 Missense_Mutation p.R363Q 0.18 tolerated(0.51) benign(0.025) TCGA-ER-A19W-06 18 13742527 13742528 - TA RNMT Frame_Shift_Ins p.E339Vfs*6 0.20 TCGA-ER-A19W-06 18 14542680 14542680 C T POTEC Missense_Mutation p.D156N 0.10 deleterious(0.02) benign(0.25) TCGA-ER-A19W-06 18 20951401 20951401 G A TMEM241 Missense_Mutation p.H157Y 0.06 deleterious(0) possibly_damaging(0.899) TCGA-ER-A19W-06 18 21343446 21343446 C T LAMA3 Nonsense_Mutation p.Q381* 0.05 TCGA-ER-A19W-06 18 47015807 47015807 G A RPL17-C18orf32 Silent p.P143P 0.24 TCGA-ER-A19W-06 18 48510961 48510961 T C ELAC1 Intron 0.20 TCGA-ER-A19W-06 18 60646446 60646446 C T PHLPP1 Nonsense_Mutation p.R1646* 0.22 TCGA-ER-A19W-06 18 9887600 9887600 C T TXNDC2 Missense_Mutation p.P375L 0.31 tolerated(0.64) possibly_damaging(0.775) TCGA-ER-A19W-06 19 10264999 10264999 G A DNMT1 Silent p.A663A 0.18 TCGA-ER-A19W-06 19 12035985 12035985 G C ZNF763 5'UTR 0.25 TCGA-ER-A19W-06 19 12692234 12692234 C T ZNF490 Missense_Mutation p.E219K 0.17 tolerated(0.11) possibly_damaging(0.893) TCGA-ER-A19W-06 19 15132236 15132236 A G CCDC105 Missense_Mutation p.K316E 0.14 tolerated(0.25) possibly_damaging(0.686) TCGA-ER-A19W-06 19 15918002 15918002 G A OR10H1 Silent p.L282L 0.12 TCGA-ER-A19W-06 19 17081740 17081740 C T CPAMD8 Missense_Mutation p.G772E 0.13 tolerated(0.1) probably_damaging(0.978) TCGA-ER-A19W-06 19 17311587 17311587 G C MYO9B Missense_Mutation p.Q1504H 0.21 deleterious(0.04) benign(0.212) TCGA-ER-A19W-06 19 22271019 22271019 A G ZNF257 Missense_Mutation p.K156R 0.21 deleterious(0.02) benign(0.005) TCGA-ER-A19W-06 19 30934607 30934607 C T ZNF536 Silent p.A46A 0.17 TCGA-ER-A19W-06 19 33350846 33350846 G A SLC7A9 Silent p.I258I 0.16 TCGA-ER-A19W-06 19 37440439 37440439 C T ZNF568 Silent p.I128I 0.10 TCGA-ER-A19W-06 19 39967062 39967062 C T SUPT5H 3'UTR 0.19 TCGA-ER-A19W-06 19 41092808 41092808 C T SHKBP1 Missense_Mutation p.P432S 0.20 tolerated(0.13) benign(0.024) TCGA-ER-A19W-06 19 44501709 44501709 C T ZNF155 3'UTR 0.31 TCGA-ER-A19W-06 19 44732527 44732527 C T ZNF227 Intron 0.16 TCGA-ER-A19W-06 19 48603041 48603041 G T PLA2G4C Missense_Mutation p.Q122K 0.12 tolerated(1) benign(0.002) TCGA-ER-A19W-06 19 49362906 49362906 C T PLEKHA4 Missense_Mutation p.G171E 0.24 tolerated(0.06) benign(0.079) TCGA-ER-A19W-06 19 49362907 49362907 C T PLEKHA4 Missense_Mutation p.G171R 0.22 deleterious(0.01) possibly_damaging(0.723) TCGA-ER-A19W-06 19 49573270 49573270 C T KCNA7 3'UTR 0.12 TCGA-ER-A19W-06 19 50435948 50435948 C T ATF5 Missense_Mutation p.L150F 0.24 tolerated(0.72) benign(0.001) TCGA-ER-A19W-06 19 51647691 51647691 C T SIGLEC7 Silent p.I154I 0.16 TCGA-ER-A19W-06 19 52130935 52130935 G A SIGLEC5 Silent p.S354S 0.11 TCGA-ER-A19W-06 19 52942401 52942401 C T ZNF534 Missense_Mutation p.S576L 0.28 tolerated(0.05) benign(0.001) TCGA-ER-A19W-06 19 53303294 53303294 T C ZNF28 Missense_Mutation p.T602A 0.16 deleterious(0.01) benign(0.381) TCGA-ER-A19W-06 19 54307329 54307329 G A NLRP12 Missense_Mutation p.S821F 0.14 deleterious(0) probably_damaging(0.957) TCGA-ER-A19W-06 19 54652444 54652444 C T CNOT3 Missense_Mutation p.P458S 0.13 tolerated(0.41) possibly_damaging(0.641) TCGA-ER-A19W-06 19 55175854 55175854 G A LILRB4 Silent p.G191G 0.16 TCGA-ER-A19W-06 19 55421412 55421412 C T NCR1 Silent p.D223D 0.15 TCGA-ER-A19W-06 19 55421422 55421422 C T NCR1 Missense_Mutation p.P227S 0.15 tolerated(1) benign(0.002) TCGA-ER-A19W-06 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.18 tolerated(0.05) benign(0.007) TCGA-ER-A19W-06 19 6156556 6156556 C T ACSBG2 Silent p.I167I 0.18 TCGA-ER-A19W-06 1 100963687 100963687 A G CDC14A Missense_Mutation p.K449E 0.18 tolerated(0.22) possibly_damaging(0.813) TCGA-ER-A19W-06 1 1019746 1019746 C T C1orf159 Silent p.P163P 0.23 TCGA-ER-A19W-06 1 103352589 103352589 C T COL11A1 Silent p.Q1544Q 0.14 TCGA-ER-A19W-06 1 111490692 111490692 T A LRIF1 Silent p.P733P 0.10 TCGA-ER-A19W-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.17 deleterious(0.01) benign(0.045) TCGA-ER-A19W-06 1 12921346 12921346 C T PRAMEF2 Silent p.L379L 0.07 TCGA-ER-A19W-06 1 12941908 12941908 C T PRAMEF4 Silent p.V214V 0.09 TCGA-ER-A19W-06 1 13695885 13695885 C T PRAMEF19 Silent p.G360G 0.17 TCGA-ER-A19W-06 1 145536944 145536944 C T ITGA10 Missense_Mutation p.S775L 0.34 tolerated(0.08) benign(0.432) TCGA-ER-A19W-06 1 153122514 153122514 C T SPRR2G Missense_Mutation p.E25K 0.35 unknown(0) TCGA-ER-A19W-06 1 153947071 153947071 G A JTB 3'UTR 0.37 TCGA-ER-A19W-06 1 155220899 155220899 G A FAM189B Silent p.A317A 0.28 TCGA-ER-A19W-06 1 157737228 157737228 G A FCRL2 Missense_Mutation p.L319F 0.31 tolerated(0.13) probably_damaging(0.955) TCGA-ER-A19W-06 1 157771747 157771747 G A FCRL1 Silent p.L282L 0.26 TCGA-ER-A19W-06 1 157771748 157771748 G A FCRL1 Silent p.G281G 0.26 TCGA-ER-A19W-06 1 15909708 15909708 C G AGMAT Missense_Mutation p.G152A 0.12 deleterious(0) possibly_damaging(0.708) TCGA-ER-A19W-06 1 160580506 160580506 C T SLAMF1 3'UTR 0.37 TCGA-ER-A19W-06 1 160802334 160802334 G A CD244 Missense_Mutation p.S336F 0.38 deleterious(0.03) probably_damaging(0.976) TCGA-ER-A19W-06 1 160851026 160851026 C T ITLN1 Nonsense_Mutation p.W161* 0.36 TCGA-ER-A19W-06 1 167962533 167962533 C T DCAF6 Missense_Mutation p.S253F 0.40 deleterious(0.04) probably_damaging(0.989) TCGA-ER-A19W-06 1 169697248 169697248 G A SELE Silent p.L410L 0.31 TCGA-ER-A19W-06 1 175049442 175049442 C T TNN Missense_Mutation p.P310S 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-ER-A19W-06 1 176563969 176563969 G A PAPPA2 Missense_Mutation p.G410E 0.34 deleterious(0) probably_damaging(0.997) TCGA-ER-A19W-06 1 17690148 17690148 C T PADI4 Silent p.I630I 0.28 TCGA-ER-A19W-06 1 183885633 183885633 C T RGL1 Missense_Mutation p.S636F 0.40 tolerated(0.05) probably_damaging(0.959) TCGA-ER-A19W-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.17 deleterious(0) possibly_damaging(0.871) TCGA-ER-A19W-06 1 200968558 200968558 C T KIF21B Missense_Mutation p.E602K 0.29 tolerated(0.18) probably_damaging(0.931) TCGA-ER-A19W-06 1 204167452 204167452 T A GOLT1A 3'UTR 0.46 TCGA-ER-A19W-06 1 215823979 215823979 A G USH2A Silent p.S4766S 0.33 TCGA-ER-A19W-06 1 22176928 22176928 G A HSPG2 Nonsense_Mutation p.R2408* 0.25 TCGA-ER-A19W-06 1 225155184 225155184 C A DNAH14 Missense_Mutation p.P184T 0.40 tolerated(0.16) benign(0.026) TCGA-ER-A19W-06 1 227239638 227239638 G A CDC42BPA Intron 0.29 TCGA-ER-A19W-06 1 228399631 228399631 G A OBSCN Silent p.P49P 0.30 TCGA-ER-A19W-06 1 228399632 228399632 G A OBSCN Missense_Mutation p.V50M 0.30 probably_damaging(0.989) TCGA-ER-A19W-06 1 229433229 229433229 C T RAB4A Silent p.S97S 0.30 TCGA-ER-A19W-06 1 233152679 233152679 C T PCNXL2 Silent p.R1609R 0.44 TCGA-ER-A19W-06 1 26526493 26526493 G A CATSPER4 Missense_Mutation p.E311K 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 1 29481420 29481420 A T SRSF4 Missense_Mutation p.D122E 0.19 deleterious(0.01) probably_damaging(0.928) TCGA-ER-A19W-06 1 33236507 33236507 G A KIAA1522 Missense_Mutation p.R576Q 0.14 deleterious(0) unknown(0) TCGA-ER-A19W-06 1 36638148 36638148 C T MAP7D1 Silent p.L182L 0.16 TCGA-ER-A19W-06 1 36752674 36752674 C T THRAP3 Silent p.S281S 0.15 TCGA-ER-A19W-06 1 43888905 43888905 C T SZT2 Missense_Mutation p.P725S 0.15 tolerated_low_confidence(0.29) benign(0.133) TCGA-ER-A19W-06 1 44064457 44064457 G A PTPRF Nonsense_Mutation p.W729* 0.22 TCGA-ER-A19W-06 1 47400027 47400027 C T CYP4A11 Silent p.G303G 0.26 TCGA-ER-A19W-06 1 50941337 50941337 G A FAF1 Silent p.S556S 0.14 TCGA-ER-A19W-06 1 55063015 55063015 G A ACOT11 Missense_Mutation p.A231T 0.13 tolerated(0.17) benign(0.406) TCGA-ER-A19W-06 1 55518436 55518436 G A PCSK9 Silent p.G257G 0.07 TCGA-ER-A19W-06 1 65684442 65684442 C T AK4 Missense_Mutation p.P91S 0.15 deleterious(0) probably_damaging(0.946) TCGA-ER-A19W-06 1 6631074 6631074 G A TAS1R1 Silent p.G99G 0.14 TCGA-ER-A19W-06 1 75107119 75107119 C T C1orf173 Missense_Mutation p.E114K 0.15 deleterious(0) probably_damaging(0.977) TCGA-ER-A19W-06 1 85397137 85397137 G A MCOLN2 Missense_Mutation p.R484C 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A19W-06 1 89237543 89237543 C T PKN2 Silent p.S322S 0.18 TCGA-ER-A19W-06 1 94546147 94546147 C T ABCA4 Missense_Mutation p.G329E 0.19 deleterious(0.02) possibly_damaging(0.764) TCGA-ER-A19W-06 1 94546148 94546148 C T ABCA4 Missense_Mutation p.G329R 0.19 tolerated(0.05) benign(0.102) TCGA-ER-A19W-06 20 17923792 17923792 G A SNX5 Silent p.L376L 0.25 TCGA-ER-A19W-06 20 29891064 29891064 G T DEFB116 Missense_Mutation p.S87Y 0.14 deleterious(0.02) possibly_damaging(0.608) TCGA-ER-A19W-06 20 29976892 29976892 C T DEFB119 Missense_Mutation p.G68D 0.27 tolerated(0.63) benign(0.012) TCGA-ER-A19W-06 20 31692639 31692639 G A BPIFB4 Silent p.V568V 0.13 TCGA-ER-A19W-06 20 34219456 34219456 G A CPNE1 Silent p.I229I 0.29 TCGA-ER-A19W-06 20 44174441 44174441 C T EPPIN Intron 0.33 TCGA-ER-A19W-06 20 45353697 45353697 C T SLC2A10 Silent p.L8L 0.24 TCGA-ER-A19W-06 20 47260957 47260957 C T PREX1 Silent p.E1197E 0.28 TCGA-ER-A19W-06 20 4764967 4764967 C T RASSF2 Missense_Mutation p.M311I 0.20 tolerated(0.46) benign(0.002) TCGA-ER-A19W-06 20 47887450 47887450 G A ZNFX1 Missense_Mutation p.T300I 0.20 tolerated(0.2) benign(0.004) TCGA-ER-A19W-06 20 49218742 49218742 C T FAM65C Missense_Mutation p.R505K 0.10 tolerated(0.96) benign(0.005) TCGA-ER-A19W-06 20 60885110 60885110 C T LAMA5 Missense_Mutation p.G3588R 0.10 benign(0.123) TCGA-ER-A19W-06 20 62168510 62168510 G A PTK6 Missense_Mutation p.A53V 0.23 tolerated(0.32) benign(0.012) TCGA-ER-A19W-06 21 19628996 19628996 T C CHODL Silent p.L84L 0.20 TCGA-ER-A19W-06 21 22710798 22710798 C T NCAM2 Missense_Mutation p.P330S 0.33 deleterious(0) probably_damaging(0.961) TCGA-ER-A19W-06 21 34166515 34166515 C T C21orf62 Missense_Mutation p.R73Q 0.20 tolerated(0.65) benign(0.003) TCGA-ER-A19W-06 21 46078010 46078010 G A KRTAP12-3 Silent p.V38V 0.20 TCGA-ER-A19W-06 21 46101954 46101954 C T KRTAP12-1 Missense_Mutation p.G29S 0.19 tolerated(1) probably_damaging(0.959) TCGA-ER-A19W-06 22 22035615 22035615 C T PPIL2 Missense_Mutation p.T108I 0.09 deleterious(0) benign(0.056) TCGA-ER-A19W-06 22 23237604 23237604 G A IGLL5 Silent p.E125E 0.46 TCGA-ER-A19W-06 22 23237605 23237605 G A IGLL5 Missense_Mutation p.E126K 0.44 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-ER-A19W-06 22 29664246 29664246 T C EWSR1 5'Flank 0.14 TCGA-ER-A19W-06 22 29924113 29924113 C G THOC5 Missense_Mutation p.M340I 0.05 tolerated(0.09) benign(0.003) TCGA-ER-A19W-06 22 29945079 29945079 G A THOC5 Missense_Mutation p.P20S 0.37 tolerated(0.34) possibly_damaging(0.857) TCGA-ER-A19W-06 22 31013451 31013451 C T TCN2 Silent p.L359L 0.06 TCGA-ER-A19W-06 22 37334266 37334266 A G CSF2RB Missense_Mutation p.T806A 0.06 tolerated(1) benign(0.001) TCGA-ER-A19W-06 22 38823568 38823568 G A KCNJ4 Silent p.H190H 0.47 TCGA-ER-A19W-06 22 40417506 40417506 C T FAM83F Missense_Mutation p.S331L 0.42 deleterious(0.01) benign(0.004) TCGA-ER-A19W-06 22 41077041 41077041 G A MCHR1 Silent p.G126G 0.05 TCGA-ER-A19W-06 22 43023637 43023637 G A CYB5R3 Missense_Mutation p.S207F 0.07 tolerated(0.1) possibly_damaging(0.776) TCGA-ER-A19W-06 22 44178146 44178146 C T EFCAB6 Missense_Mutation p.R18Q 0.36 tolerated(0.51) benign(0.011) TCGA-ER-A19W-06 22 44332975 44332975 G A PNPLA3 Missense_Mutation p.G268R 0.33 tolerated(0.34) benign(0.115) TCGA-ER-A19W-06 22 50857295 50857295 G A PPP6R2 Splice_Site p.X207_splice 0.07 TCGA-ER-A19W-06 22 51012928 51012928 G A CPT1B Silent p.I293I 0.07 TCGA-ER-A19W-06 2 103125307 103125307 G A SLC9A4 Missense_Mutation p.G468E 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19W-06 2 113788703 113788703 G A IL36B Missense_Mutation p.R15C 0.21 tolerated_low_confidence(0.06) benign(0.221) TCGA-ER-A19W-06 2 119739224 119739224 G A MARCO Missense_Mutation p.G298E 0.08 deleterious(0) probably_damaging(0.982) TCGA-ER-A19W-06 2 141773411 141773411 C T LRP1B Missense_Mutation p.D682N 0.25 possibly_damaging(0.822) TCGA-ER-A19W-06 2 152467039 152467039 G A NEB Silent p.I4003I 0.15 TCGA-ER-A19W-06 2 160755341 160755341 C T LY75-CD302 Nonsense_Mutation p.W108* 0.13 TCGA-ER-A19W-06 2 167263080 167263080 G A SCN7A Silent p.I1353I 0.19 TCGA-ER-A19W-06 2 170013930 170013930 G A LRP2 Silent p.S3990S 0.41 TCGA-ER-A19W-06 2 179400176 179400176 G T TTN Silent p.T33722T 0.21 TCGA-ER-A19W-06 2 1906969 1906969 C A MYT1L Nonsense_Mutation p.E637* 0.14 TCGA-ER-A19W-06 2 196786915 196786915 G A DNAH7 Missense_Mutation p.H1278Y 0.23 deleterious(0) benign(0.065) TCGA-ER-A19W-06 2 209138364 209138364 C T PIKFYVE Missense_Mutation p.P77S 0.20 tolerated(0.1) probably_damaging(0.98) TCGA-ER-A19W-06 2 21232139 21232139 C T APOB Missense_Mutation p.R2534Q 0.25 possibly_damaging(0.632) TCGA-ER-A19W-06 2 217124388 217124388 C T MARCH4 Missense_Mutation p.E294K 0.12 deleterious(0) benign(0.165) TCGA-ER-A19W-06 2 242065992 242065992 C T PASK Missense_Mutation p.D780N 0.25 tolerated(0.11) benign(0.258) TCGA-ER-A19W-06 2 26459837 26459837 T A HADHA Missense_Mutation p.E67V 0.21 tolerated(0.05) possibly_damaging(0.493) TCGA-ER-A19W-06 2 29072743 29072743 G A SPDYA Missense_Mutation p.G293E 0.18 tolerated_low_confidence(0.59) benign(0.001) TCGA-ER-A19W-06 2 29295609 29295609 C T C2orf71 Missense_Mutation p.E507K 0.19 tolerated(0.71) benign(0.015) TCGA-ER-A19W-06 2 31571176 31571176 C T XDH Silent p.G1035G 0.10 TCGA-ER-A19W-06 2 39997187 39997187 C T THUMPD2 Nonsense_Mutation p.W112* 0.16 TCGA-ER-A19W-06 2 50758401 50758401 G A NRXN1 Silent p.L811L 0.14 TCGA-ER-A19W-06 2 69204776 69204776 A T GKN1 Missense_Mutation p.N39I 0.07 tolerated(0.07) benign(0.141) TCGA-ER-A19W-06 2 71576658 71576658 C T ZNF638 Nonsense_Mutation p.Q192* 0.30 TCGA-ER-A19W-06 2 74135866 74135866 G A ACTG2 Missense_Mutation p.E108K 0.10 deleterious_low_confidence(0.04) probably_damaging(0.909) TCGA-ER-A19W-06 2 74783860 74783860 C T DOK1 Silent p.D355D 0.22 TCGA-ER-A19W-06 2 98409920 98409920 C T TMEM131 Silent p.P1161P 0.06 TCGA-ER-A19W-06 3 11600026 11600026 C T VGLL4 3'UTR 0.19 TCGA-ER-A19W-06 3 122003865 122003865 G A CASR Missense_Mutation p.D1032N 0.16 tolerated_low_confidence(0.87) benign(0.064) TCGA-ER-A19W-06 3 122060290 122060290 G A CSTA Missense_Mutation p.R58Q 0.17 tolerated(0.73) benign(0.011) TCGA-ER-A19W-06 3 123339130 123339130 G A MYLK Silent p.I1764I 0.17 TCGA-ER-A19W-06 3 123512605 123512605 G A MYLK Silent p.P28P 0.15 TCGA-ER-A19W-06 3 123512606 123512606 G A MYLK Missense_Mutation p.P28L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A19W-06 3 124044922 124044922 C T KALRN Silent p.T394T 0.22 TCGA-ER-A19W-06 3 124132390 124132390 C T KALRN Missense_Mutation p.T805I 0.18 deleterious(0.01) benign(0.355) TCGA-ER-A19W-06 3 126915855 126915855 C T C3orf56 Silent p.S109S 0.16 TCGA-ER-A19W-06 3 127816274 127816274 G A RUVBL1 Silent p.V295V 0.19 TCGA-ER-A19W-06 3 129236373 129236373 C T IFT122 Silent p.S1160S 0.21 TCGA-ER-A19W-06 3 130282067 130282067 A G COL6A6 Missense_Mutation p.K74E 0.18 tolerated(0.59) benign(0.004) TCGA-ER-A19W-06 3 130284164 130284164 C T COL6A6 Nonsense_Mutation p.Q330* 0.15 TCGA-ER-A19W-06 3 133362176 133362176 G A TOPBP1 Missense_Mutation p.S630L 0.17 deleterious(0) probably_damaging(0.988) TCGA-ER-A19W-06 3 133653565 133653565 G A SLCO2A1 Missense_Mutation p.L642F 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-ER-A19W-06 3 14166704 14166704 A T TMEM43 Missense_Mutation p.N4I 0.21 tolerated_low_confidence(0.06) benign(0.019) TCGA-ER-A19W-06 3 142280122 142280122 G A ATR Silent p.L438L 0.13 TCGA-ER-A19W-06 3 155198718 155198718 G A PLCH1 3'UTR 0.23 TCGA-ER-A19W-06 3 156422757 156422757 G A TIPARP Missense_Mutation p.R604K 0.16 deleterious(0.04) possibly_damaging(0.841) TCGA-ER-A19W-06 3 170800057 170800057 A T TNIK Missense_Mutation p.V1099D 0.23 deleterious(0) probably_damaging(0.962) TCGA-ER-A19W-06 3 178919220 178919220 C T PIK3CA Silent p.S235S 0.14 TCGA-ER-A19W-06 3 186965074 186965074 G T MASP1 Intron 0.21 TCGA-ER-A19W-06 3 24231674 24231674 G A THRB Silent p.L58L 0.18 TCGA-ER-A19W-06 3 27436085 27436085 A G SLC4A7 Missense_Mutation p.I1005T 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 3 39093555 39093555 G A WDR48 Silent p.R13R 0.17 TCGA-ER-A19W-06 3 39307858 39307858 C T CX3CR1 Missense_Mutation p.G80E 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A19W-06 3 39374260 39374260 G A CCR8 Silent p.T146T 0.17 TCGA-ER-A19W-06 3 44906594 44906594 C T TMEM42 Silent p.F134F 0.16 TCGA-ER-A19W-06 3 47047317 47047317 C T NBEAL2 Nonsense_Mutation p.Q2261* 0.10 TCGA-ER-A19W-06 3 49152779 49152779 G C USP19 Missense_Mutation p.A633G 0.15 tolerated(0.23) benign(0.001) TCGA-ER-A19W-06 3 53902879 53902879 G A ACTR8 Missense_Mutation p.P581L 0.07 deleterious(0) probably_damaging(0.959) TCGA-ER-A19W-06 3 56605222 56605222 T C CCDC66 Silent p.A276A 0.15 TCGA-ER-A19W-06 3 56605224 56605224 T C CCDC66 Missense_Mutation p.L277S 0.14 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 3 79174652 79174652 C T ROBO1 Silent p.T42T 0.28 TCGA-ER-A19W-06 3 9057396 9057396 G T SRGAP3 Missense_Mutation p.D566E 0.10 tolerated(0.47) benign(0.068) TCGA-ER-A19W-06 3 9859352 9859352 G A TTLL3 Silent p.R256R 0.17 TCGA-ER-A19W-06 4 100239242 100239242 C T ADH1B Missense_Mutation p.V74M 0.19 deleterious(0) probably_damaging(0.927) TCGA-ER-A19W-06 4 100264083 100264083 C T ADH1C Missense_Mutation p.A233T 0.10 probably_damaging(1) TCGA-ER-A19W-06 4 101108747 101108747 G A DDIT4L 3'UTR 0.33 TCGA-ER-A19W-06 4 1018798 1018798 C T FGFRL1 Missense_Mutation p.T393I 0.16 tolerated(0.34) benign(0.014) TCGA-ER-A19W-06 4 118975189 118975189 G A NDST3 Missense_Mutation p.E42K 0.15 tolerated_low_confidence(0.25) probably_damaging(0.995) TCGA-ER-A19W-06 4 121958528 121958528 G A NDNF Missense_Mutation p.P200S 0.14 tolerated(0.12) possibly_damaging(0.676) TCGA-ER-A19W-06 4 126328293 126328293 C T FAT4 Missense_Mutation p.P1856S 0.10 possibly_damaging(0.522) TCGA-ER-A19W-06 4 155157164 155157164 G A DCHS2 Silent p.F2425F 0.13 TCGA-ER-A19W-06 4 1732637 1732637 A C TACC3 Missense_Mutation p.E470A 0.13 tolerated(0.11) benign(0.13) TCGA-ER-A19W-06 4 187173218 187173218 T G KLKB1 Missense_Mutation p.S398A 0.24 tolerated(0.51) benign(0.005) TCGA-ER-A19W-06 4 189012932 189012932 C G TRIML2 Missense_Mutation p.R253S 0.09 deleterious(0.01) benign(0.281) TCGA-ER-A19W-06 4 36168602 36168602 C T ARAP2 Missense_Mutation p.R642Q 0.09 deleterious(0) possibly_damaging(0.704) TCGA-ER-A19W-06 4 3952884 3952884 G A FAM86EP Intron 0.15 TCGA-ER-A19W-06 4 46930631 46930631 G A GABRA4 Missense_Mutation p.R426W 0.15 deleterious(0.02) possibly_damaging(0.512) TCGA-ER-A19W-06 4 647983 647983 C A PDE6B Intron 0.10 TCGA-ER-A19W-06 4 71255502 71255502 C T SMR3B Silent p.I59I 0.12 TCGA-ER-A19W-06 4 786358 786358 C T CPLX1 Missense_Mutation p.E24K 0.09 tolerated(0.11) probably_damaging(0.995) TCGA-ER-A19W-06 4 8621152 8621152 G A CPZ Silent p.K589K 0.09 TCGA-ER-A19W-06 4 86921785 86921785 G A ARHGAP24 Silent p.Q719Q 0.21 TCGA-ER-A19W-06 4 86988964 86988964 G A MAPK10 Missense_Mutation p.S316F 0.14 tolerated(0.09) benign(0.046) TCGA-ER-A19W-06 4 90874336 90874336 G A MMRN1 Missense_Mutation p.E1152K 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A19W-06 5 132262827 132262827 G A AFF4 Missense_Mutation p.P346S 0.14 tolerated(0.34) probably_damaging(0.977) TCGA-ER-A19W-06 5 135692998 135692998 G A TRPC7 Silent p.I26I 0.08 TCGA-ER-A19W-06 5 13862671 13862671 G A DNAH5 Silent p.S1594S 0.14 TCGA-ER-A19W-06 5 13864613 13864613 C T DNAH5 Missense_Mutation p.E1497K 0.14 possibly_damaging(0.621) TCGA-ER-A19W-06 5 140552431 140552431 G A PCDHB7 Silent p.V5V 0.07 TCGA-ER-A19W-06 5 140590603 140590603 C T PCDHB12 Silent p.F708F 0.21 TCGA-ER-A19W-06 5 140865166 140865166 T C PCDHGC4 Silent p.I142I 0.11 TCGA-ER-A19W-06 5 146030138 146030138 C T PPP2R2B Nonsense_Mutation p.W202* 0.15 TCGA-ER-A19W-06 5 149589031 149589031 G A SLC6A7 Silent p.T588T 0.08 TCGA-ER-A19W-06 5 150867827 150867827 C T SLC36A1 3'UTR 0.23 TCGA-ER-A19W-06 5 151231040 151231040 C T GLRA1 Missense_Mutation p.D275N 0.12 deleterious(0.04) possibly_damaging(0.579) TCGA-ER-A19W-06 5 156915370 156915370 G A ADAM19 Missense_Mutation p.S818F 0.11 tolerated(0.16) possibly_damaging(0.724) TCGA-ER-A19W-06 5 170351479 170351479 G A RANBP17 Missense_Mutation p.D465N 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A19W-06 5 176519753 176519753 C T FGFR4 Missense_Mutation p.S342F 0.06 deleterious(0) probably_damaging(0.99) TCGA-ER-A19W-06 5 179192444 179192444 C T MAML1 Missense_Mutation p.P145S 0.11 tolerated(0.19) benign(0.007) TCGA-ER-A19W-06 5 19747144 19747144 C T CDH18 Missense_Mutation p.E144K 0.09 deleterious(0) probably_damaging(0.988) TCGA-ER-A19W-06 5 226006 226006 T G SDHA Missense_Mutation p.N155K 0.14 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-ER-A19W-06 5 31267534 31267534 C T CDH6 5'UTR 0.22 TCGA-ER-A19W-06 5 40852466 40852466 C A CARD6 Silent p.I344I 0.08 TCGA-ER-A19W-06 5 40981585 40981585 G A C7 Silent p.T814T 0.15 TCGA-ER-A19W-06 5 41382423 41382423 G A PLCXD3 Missense_Mutation p.P106L 0.16 tolerated(0.11) benign(0.106) TCGA-ER-A19W-06 5 45645543 45645543 G A HCN1 Missense_Mutation p.T198I 0.17 tolerated(1) benign(0.016) TCGA-ER-A19W-06 5 68568762 68568762 C T CDK7 Missense_Mutation p.P253L 0.10 deleterious(0.03) probably_damaging(1) TCGA-ER-A19W-06 5 73931199 73931199 G A ENC1 Missense_Mutation p.A371V 0.14 tolerated(1) benign(0.428) TCGA-ER-A19W-06 5 76264643 76264643 T G CRHBP Missense_Mutation p.L301R 0.14 deleterious(0) probably_damaging(0.989) TCGA-ER-A19W-06 5 79034357 79034357 G A CMYA5 Missense_Mutation p.D3257N 0.07 benign(0.119) TCGA-ER-A19W-06 5 83356164 83356164 C T EDIL3 Silent p.V364V 0.25 TCGA-ER-A19W-06 5 90052388 90052388 G A GPR98 Missense_Mutation p.E3900K 0.15 possibly_damaging(0.899) TCGA-ER-A19W-06 5 90084058 90084058 C T GPR98 Silent p.F4608F 0.08 TCGA-ER-A19W-06 6 102337669 102337669 C T GRIK2 Missense_Mutation p.S560F 0.16 deleterious(0) probably_damaging(0.953) TCGA-ER-A19W-06 6 106553183 106553183 C T PRDM1 Missense_Mutation p.T383M 0.08 tolerated(0.12) benign(0.359) TCGA-ER-A19W-06 6 130465754 130465754 C G SAMD3 Missense_Mutation p.E492Q 0.18 tolerated(0.34) possibly_damaging(0.548) TCGA-ER-A19W-06 6 152443755 152443755 C T SYNE1 Missense_Mutation p.G8737D 0.22 benign(0.031) TCGA-ER-A19W-06 6 155143429 155143429 C T SCAF8 Silent p.S604S 0.21 TCGA-ER-A19W-06 6 159646637 159646637 C T FNDC1 Missense_Mutation p.R319C 0.20 deleterious(0) unknown(0) TCGA-ER-A19W-06 6 17426838 17426838 G A CAP2 Missense_Mutation p.E47K 0.09 tolerated(0.29) probably_damaging(0.91) TCGA-ER-A19W-06 6 22287667 22287667 G A PRL Silent p.L216L 0.21 TCGA-ER-A19W-06 6 28540967 28540967 G A SCAND3 Missense_Mutation p.S900L 0.16 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-ER-A19W-06 6 29231806 29231806 C T XXbac-BPG308J9.3 RNA 0.11 TCGA-ER-A19W-06 6 29974613 29974613 C T ZNRD1-AS1 Intron 0.28 TCGA-ER-A19W-06 6 33408648 33408648 C T SYNGAP1 Missense_Mutation p.L607F 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 6 33643561 33643561 G A ITPR3 Silent p.L1070L 0.09 TCGA-ER-A19W-06 6 33650359 33650359 C T ITPR3 Missense_Mutation p.P1512L 0.26 tolerated(0.11) benign(0.102) TCGA-ER-A19W-06 6 35289229 35289229 G A DEF6 3'UTR 0.25 TCGA-ER-A19W-06 6 35587958 35587958 G A FKBP5 Missense_Mutation p.S115L 0.17 tolerated(0.19) benign(0.003) TCGA-ER-A19W-06 6 35748886 35748886 C T CLPSL1 5'UTR 0.13 TCGA-ER-A19W-06 6 46976845 46976845 C T GPR110 Missense_Mutation p.E776K 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-ER-A19W-06 6 49696553 49696553 C T CRISP3 Missense_Mutation p.E233K 0.21 tolerated(0.14) benign(0.087) TCGA-ER-A19W-06 6 49802891 49802891 G A CRISP1 3'UTR 0.17 TCGA-ER-A19W-06 6 5368904 5368904 C T FARS2 Missense_Mutation p.S34L 0.30 tolerated(0.12) benign(0.001) TCGA-ER-A19W-06 6 53986399 53986399 G A MLIP Missense_Mutation p.R73K 0.25 tolerated(0.86) benign(0.055) TCGA-ER-A19W-06 6 54805146 54805146 G A FAM83B Silent p.R459R 0.13 TCGA-ER-A19W-06 6 57467129 57467129 G A PRIM2 3'UTR 0.06 TCGA-ER-A19W-06 6 70965090 70965090 C T COL9A1 Missense_Mutation p.D503N 0.12 probably_damaging(0.974) TCGA-ER-A19W-06 6 7583574 7583574 G A DSP Missense_Mutation p.E2027K 0.32 benign(0.016) TCGA-ER-A19W-06 6 76386794 76386794 C T SENP6 Missense_Mutation p.P557L 0.21 tolerated(0.75) benign(0.002) TCGA-ER-A19W-06 6 83926279 83926279 C T ME1 Missense_Mutation p.E496K 0.17 tolerated(0.85) benign(0.051) TCGA-ER-A19W-06 6 90417139 90417139 G A MDN1 Missense_Mutation p.S2652F 0.11 benign(0.434) TCGA-ER-A19W-06 7 100179449 100179449 G A LRCH4 Silent p.S183S 0.17 TCGA-ER-A19W-06 7 138604144 138604144 G A KIAA1549 Silent p.S76S 0.30 TCGA-ER-A19W-06 7 141730243 141730243 G A MGAM Missense_Mutation p.E435K 0.25 tolerated(0.08) benign(0.228) TCGA-ER-A19W-06 7 142479964 142479964 G A PRSS3P2 RNA 0.22 TCGA-ER-A19W-06 7 151845398 151845398 G A KMT2C Silent p.I4538I 0.20 TCGA-ER-A19W-06 7 18631203 18631203 G A HDAC9 Silent p.T160T 0.24 TCGA-ER-A19W-06 7 41730107 41730107 G A INHBA Missense_Mutation p.S141F 0.15 deleterious(0) probably_damaging(0.992) TCGA-ER-A19W-06 7 51287567 51287567 G A COBL Missense_Mutation p.P39L 0.12 tolerated(0.24) benign(0.015) TCGA-ER-A19W-06 7 72411440 72411440 C T POM121 Missense_Mutation p.S319F 0.14 tolerated(0.09) benign(0.036) TCGA-ER-A19W-06 7 72416746 72416746 C T POM121 Intron 0.13 TCGA-ER-A19W-06 7 73471044 73471044 G A ELN Splice_Site p.X453_splice 0.17 TCGA-ER-A19W-06 7 74197909 74197909 C T NCF1 Missense_Mutation p.P206S 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A19W-06 8 110432829 110432829 T C PKHD1L1 Silent p.N869N 0.23 TCGA-ER-A19W-06 8 142199133 142199133 G A DENND3 Missense_Mutation p.D965N 0.23 deleterious(0.03) possibly_damaging(0.728) TCGA-ER-A19W-06 8 143425466 143425466 G A TSNARE1 Silent p.L202L 0.27 TCGA-ER-A19W-06 8 144621039 144621039 G A ZC3H3 Silent p.P166P 0.18 TCGA-ER-A19W-06 8 144697044 144697044 G A TSTA3 Silent p.A101A 0.12 TCGA-ER-A19W-06 8 145278100 145278100 C T MROH1 Silent p.I435I 0.18 TCGA-ER-A19W-06 8 20036652 20036652 G A SLC18A1 Silent p.F156F 0.13 TCGA-ER-A19W-06 8 23225650 23225650 A G LOXL2 Missense_Mutation p.V72A 0.18 deleterious(0) possibly_damaging(0.73) TCGA-ER-A19W-06 8 24254799 24254799 C T ADAMDEC1 Missense_Mutation p.H153Y 0.17 tolerated(0.07) probably_damaging(0.937) TCGA-ER-A19W-06 8 24324534 24324534 G A ADAM7 Intron 0.25 TCGA-ER-A19W-06 8 27610053 27610053 G A CCDC25 Missense_Mutation p.L74F 0.22 deleterious(0) probably_damaging(0.923) TCGA-ER-A19W-06 8 27888832 27888832 C T NUGGC Silent p.E612E 0.15 TCGA-ER-A19W-06 8 67062036 67062036 C T TRIM55 Missense_Mutation p.H254Y 0.20 deleterious(0) possibly_damaging(0.638) TCGA-ER-A19W-06 8 68113761 68113761 C T ARFGEF1 Silent p.R1736R 0.10 TCGA-ER-A19W-06 8 68113762 68113762 C T ARFGEF1 Missense_Mutation p.R1736Q 0.10 deleterious(0.01) possibly_damaging(0.852) TCGA-ER-A19W-06 8 73848982 73848982 G A KCNB2 Silent p.L464L 0.14 TCGA-ER-A19W-06 8 75262744 75262744 G A GDAP1 Silent p.A16A 0.23 TCGA-ER-A19W-06 8 75262745 75262745 G A GDAP1 Missense_Mutation p.E17K 0.22 tolerated(0.3) benign(0) TCGA-ER-A19W-06 8 81897449 81897449 G A PAG1 Silent p.L146L 0.14 TCGA-ER-A19W-06 8 82371553 82371553 C T FABP9 Silent p.R31R 0.16 TCGA-ER-A19W-06 8 87165116 87165116 G A ATP6V0D2 Silent p.K321K 0.21 TCGA-ER-A19W-06 8 88296958 88296958 C T CNBD1 Missense_Mutation p.S275L 0.19 tolerated(0.37) benign(0.004) TCGA-ER-A19W-06 8 90958506 90958506 C T NBN Silent p.Q644Q 0.18 TCGA-ER-A19W-06 8 95539408 95539408 T C KIAA1429 Missense_Mutation p.Y355C 0.16 tolerated(0.08) probably_damaging(0.967) TCGA-ER-A19W-06 9 117836069 117836069 C T TNC Silent p.L1009L 0.20 TCGA-ER-A19W-06 9 124855614 124855614 G A TTLL11 Silent p.S28S 0.23 TCGA-ER-A19W-06 9 125438137 125438137 C T OR1L3 Silent p.S243S 0.15 TCGA-ER-A19W-06 9 134026040 134026040 C A NUP214 Missense_Mutation p.A722D 0.25 benign(0.184) TCGA-ER-A19W-06 9 134026041 134026041 C G NUP214 Silent p.A722A 0.25 TCGA-ER-A19W-06 9 136915685 136915685 G A BRD3 Silent p.S175S 0.22 TCGA-ER-A19W-06 9 136915686 136915686 G A BRD3 Missense_Mutation p.S175F 0.23 deleterious(0.03) benign(0.065) TCGA-ER-A19W-06 9 139904055 139904055 G A ABCA2 Silent p.F2224F 0.15 TCGA-ER-A19W-06 9 139908812 139908812 G A ABCA2 Missense_Mutation p.P1350S 0.27 tolerated(0.28) benign(0.149) TCGA-ER-A19W-06 9 14823308 14823308 C T FREM1 Missense_Mutation p.M729I 0.23 deleterious(0.01) benign(0.127) TCGA-ER-A19W-06 9 71491666 71491666 C T PIP5K1B Nonsense_Mutation p.R92* 0.24 TCGA-ER-A19W-06 9 77280506 77280506 C T RORB Missense_Mutation p.A332V 0.19 deleterious(0.01) benign(0.296) TCGA-ER-A19W-06 9 78803511 78803511 G T PCSK5 Missense_Mutation p.C767F 0.16 deleterious(0) probably_damaging(0.993) TCGA-ER-A19W-06 9 96051719 96051719 C T WNK2 Silent p.Y1598Y 0.15 TCGA-ER-A19W-06 9 96051720 96051720 C T WNK2 Nonsense_Mutation p.Q1599* 0.15 TCGA-ER-A19W-06 9 96422565 96422565 C T PHF2 Missense_Mutation p.S474F 0.16 deleterious(0.04) unknown(0) TCGA-ER-A19W-06 X 109764617 109764617 G A TDGF1P3 RNA 0.17 TCGA-ER-A19W-06 X 111155629 111155629 C T TRPC5 Missense_Mutation p.E264K 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 X 12734875 12734875 A G FRMPD4 Missense_Mutation p.N766S 0.22 tolerated(0.24) benign(0.002) TCGA-ER-A19W-06 X 144337371 144337371 G A SPANXN1 3'UTR 0.26 TCGA-ER-A19W-06 X 148798374 148798374 G A MAGEA11 Missense_Mutation p.D410N 0.19 tolerated(0.35) benign(0.05) TCGA-ER-A19W-06 X 14882681 14882689 CCTGAAAGC - FANCB Splice_Site p.X315_splice 0.16 TCGA-ER-A19W-06 X 150349341 150349341 C T GPR50 Missense_Mutation p.S429F 0.23 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-ER-A19W-06 X 150908151 150908151 C T CNGA2 Silent p.T107T 0.19 TCGA-ER-A19W-06 X 1522411 1522411 C T ASMTL Intron 0.18 TCGA-ER-A19W-06 X 154194718 154194718 G A F8 Silent p.V418V 0.18 TCGA-ER-A19W-06 X 3019199 3019199 G A ARSF Missense_Mutation p.G347R 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A19W-06 X 37514986 37514986 G A LANCL3 Missense_Mutation p.D207N 0.26 deleterious(0.04) benign(0.012) TCGA-ER-A19W-06 X 37664330 37664330 G A CYBB Missense_Mutation p.G408E 0.26 deleterious(0) probably_damaging(0.999) TCGA-ER-A19W-06 X 84634244 84634244 C T POF1B Silent p.R72R 0.25 TCGA-ER-A1A1-06 10 98742291 98742291 C T C10orf12 Missense_Mutation p.P382S 0.10 tolerated(0.67) benign(0.002) TCGA-ER-A1A1-06 11 36520147 36520147 C T TRAF6 Missense_Mutation p.E114K 0.11 tolerated(0.06) benign(0.112) TCGA-ER-A1A1-06 11 61539208 61539208 G A MYRF Missense_Mutation p.G326D 0.09 deleterious(0.05) probably_damaging(1) TCGA-ER-A1A1-06 11 62592016 62592016 C A STX5 Missense_Mutation p.G234V 0.09 tolerated(0.24) benign(0.065) TCGA-ER-A1A1-06 11 64128626 64128626 C T RPS6KA4 Silent p.D161D 0.09 TCGA-ER-A1A1-06 11 92086330 92086330 G A FAT3 Missense_Mutation p.G351E 0.05 probably_damaging(1) TCGA-ER-A1A1-06 12 109650724 109650724 C T ACACB Silent p.I1111I 0.09 TCGA-ER-A1A1-06 12 123950589 123950589 T A SNRNP35 Missense_Mutation p.L173M 0.09 deleterious(0.03) possibly_damaging(0.861) TCGA-ER-A1A1-06 12 47630006 47630006 C T PCED1B Missense_Mutation p.P387L 0.08 deleterious(0.02) benign(0.396) TCGA-ER-A1A1-06 12 52779412 52779412 G A KRT84 5'UTR 0.10 TCGA-ER-A1A1-06 12 58010635 58010635 C T ARHGEF25 Silent p.P606P 0.06 TCGA-ER-A1A1-06 13 53217282 53217282 G T HNRNPA1L2 Nonsense_Mutation p.G219* 0.08 TCGA-ER-A1A1-06 14 58060760 58060760 G A SLC35F4 Silent p.S98S 0.11 TCGA-ER-A1A1-06 15 66795630 66795630 G A RPL4 Intron 0.09 TCGA-ER-A1A1-06 15 69737190 69737190 C T KIF23 Missense_Mutation p.S814F 0.09 deleterious(0) probably_damaging(0.999) TCGA-ER-A1A1-06 15 89424916 89424916 C T HAPLN3 Silent p.E55E 0.10 TCGA-ER-A1A1-06 16 18865012 18865012 T A SMG1 Missense_Mutation p.N1554I 0.08 deleterious(0) probably_damaging(0.986) TCGA-ER-A1A1-06 16 30455897 30455897 A C SEPHS2 Silent p.A384A 0.08 TCGA-ER-A1A1-06 16 309980 309980 C T ITFG3 Missense_Mutation p.P133L 0.10 deleterious(0) possibly_damaging(0.732) TCGA-ER-A1A1-06 16 825489 825489 G A MSLNL Silent p.A424A 0.09 TCGA-ER-A1A1-06 17 10296412 10296412 G A MYH8 Missense_Mutation p.A1761V 0.07 deleterious(0.01) possibly_damaging(0.697) TCGA-ER-A1A1-06 17 26961756 26961756 G A KIAA0100 Missense_Mutation p.S950F 0.08 deleterious(0.03) probably_damaging(0.986) TCGA-ER-A1A1-06 17 28652031 28652031 T C TMIGD1 Missense_Mutation p.N148S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A1A1-06 17 73269592 73269592 G A SLC25A19 Silent p.F301F 0.09 TCGA-ER-A1A1-06 17 80395108 80395108 G A HEXDC Silent p.K256K 0.09 TCGA-ER-A1A1-06 19 9059164 9059164 C T MUC16 Missense_Mutation p.E9428K 0.09 unknown(0) TCGA-ER-A1A1-06 1 109793469 109793469 C T CELSR2 Silent p.V256V 0.06 TCGA-ER-A1A1-06 1 198492695 198492695 C T ATP6V1G3 Splice_Site p.X62_splice 0.08 TCGA-ER-A1A1-06 1 3394499 3394499 G A ARHGEF16 Missense_Mutation p.E512K 0.08 deleterious(0) probably_damaging(0.997) TCGA-ER-A1A1-06 1 43395584 43395584 G A SLC2A1 Silent p.F213F 0.10 TCGA-ER-A1A1-06 1 52825463 52825463 G A CC2D1B Nonsense_Mutation p.R286* 0.31 TCGA-ER-A1A1-06 1 52825464 52825464 G A CC2D1B Silent p.S285S 0.31 TCGA-ER-A1A1-06 20 52198287 52198287 G A ZNF217 Missense_Mutation p.S360F 0.09 deleterious(0.02) possibly_damaging(0.854) TCGA-ER-A1A1-06 20 61595602 61595602 C T SLC17A9 Missense_Mutation p.P282L 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A1A1-06 22 19470342 19470342 G A CDC45 Missense_Mutation p.D112N 0.19 deleterious(0.05) benign(0.013) TCGA-ER-A1A1-06 22 23055461 23055461 G A IGLV3-21 Missense_Mutation p.G42R 0.12 tolerated(0.16) benign(0.038) TCGA-ER-A1A1-06 22 27019282 27019282 G A CRYBA4 Missense_Mutation p.E42K 0.10 tolerated(0.13) benign(0.025) TCGA-ER-A1A1-06 22 32756308 32756308 G A RFPL3 Missense_Mutation p.R148Q 0.14 tolerated(0.2) benign(0.004) TCGA-ER-A1A1-06 22 32828476 32828476 C T BPIFC Missense_Mutation p.E345K 0.14 tolerated(0.26) benign(0.02) TCGA-ER-A1A1-06 22 33402622 33402622 G A SYN3 Missense_Mutation p.S9F 0.15 deleterious(0) unknown(0) TCGA-ER-A1A1-06 2 135740845 135740845 T C MAP3K19 Intron 0.07 TCGA-ER-A1A1-06 2 163374572 163374572 G A KCNH7 Missense_Mutation p.S187L 0.08 tolerated(0.64) benign(0.009) TCGA-ER-A1A1-06 2 21228104 21228104 G A APOB Missense_Mutation p.S3879F 0.04 benign(0.002) TCGA-ER-A1A1-06 2 219696074 219696074 C T PRKAG3 Missense_Mutation p.G20S 0.27 deleterious_low_confidence(0.01) benign(0.083) TCGA-ER-A1A1-06 2 228149036 228149036 G A COL4A3 Silent p.G952G 0.09 TCGA-ER-A1A1-06 2 32800289 32800289 C T BIRC6 Missense_Mutation p.S4404F 0.05 benign(0.368) TCGA-ER-A1A1-06 3 120393815 120393815 A G HGD Missense_Mutation p.Y37H 0.05 tolerated(0.12) benign(0.236) TCGA-ER-A1A1-06 3 124044826 124044826 G A KALRN Splice_Site p.X363_splice 0.07 TCGA-ER-A1A1-06 3 133098655 133098655 C T TMEM108 Missense_Mutation p.P34S 0.06 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-ER-A1A1-06 3 158546827 158546827 C T MFSD1 3'UTR 0.10 TCGA-ER-A1A1-06 3 182870235 182870235 C T LAMP3 Silent p.G272G 0.06 TCGA-ER-A1A1-06 3 51864871 51864871 G A IQCF3 3'UTR 0.16 TCGA-ER-A1A1-06 3 98188672 98188672 C T OR5K1 Silent p.N84N 0.05 TCGA-ER-A1A1-06 4 158257677 158257677 C T GRIA2 Missense_Mutation p.P541L 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A1A1-06 4 176594859 176594859 G A GPM6A Missense_Mutation p.T120I 0.11 tolerated(0.07) probably_damaging(0.97) TCGA-ER-A1A1-06 4 40810421 40810421 G A NSUN7 Missense_Mutation p.R541Q 0.10 deleterious(0.04) possibly_damaging(0.638) TCGA-ER-A1A1-06 5 13759020 13759020 C T DNAH5 Missense_Mutation p.D3452N 0.09 possibly_damaging(0.822) TCGA-ER-A1A1-06 5 140564127 140564127 G A PCDHB16 Missense_Mutation p.G665S 0.09 deleterious_low_confidence(0.01) benign(0.295) TCGA-ER-A1A1-06 5 156590528 156590528 G A FAM71B Missense_Mutation p.P250S 0.09 tolerated(0.34) benign(0) TCGA-ER-A1A1-06 6 10956372 10956372 G A SYCP2L Missense_Mutation p.G687E 0.11 deleterious(0.04) possibly_damaging(0.656) TCGA-ER-A1A1-06 6 117686846 117686846 C T ROS1 Silent p.R957R 0.11 TCGA-ER-A1A1-06 6 33414468 33414468 C T SYNGAP1 Silent p.I1233I 0.13 TCGA-ER-A1A1-06 7 104748158 104748158 G A KMT2E Missense_Mutation p.R1085K 0.14 deleterious_low_confidence(0) benign(0.067) TCGA-ER-A1A1-06 7 106508303 106508303 C T PIK3CG Silent p.L99L 0.11 TCGA-ER-A1A1-06 7 107671290 107671290 C T LAMB4 Silent p.Q1651Q 0.10 TCGA-ER-A1A1-06 7 116862957 116862957 T C ST7 Missense_Mutation p.C561R 0.08 deleterious_low_confidence(0.01) benign(0) TCGA-ER-A1A1-06 7 139229024 139229024 G A CLEC2L Missense_Mutation p.R194K 0.19 tolerated(0.72) benign(0.033) TCGA-ER-A1A1-06 7 141416068 141416068 G A WEE2 Splice_Site p.X195_splice 0.08 TCGA-ER-A1A1-06 7 141427191 141427191 G A WEE2 Missense_Mutation p.E494K 0.06 tolerated(0.07) benign(0.434) TCGA-ER-A1A1-06 7 142008741 142008741 G A TRBV3-1 Missense_Mutation p.E72K 0.08 tolerated(0.38) benign(0.062) TCGA-ER-A1A1-06 7 143792901 143792901 G A OR2A12 Missense_Mutation p.R234K 0.08 tolerated(0.3) benign(0.03) TCGA-ER-A1A1-06 7 148524307 148524307 G A EZH2 Missense_Mutation p.A226V 0.05 deleterious(0) probably_damaging(0.999) TCGA-ER-A1A1-06 7 3990604 3990604 G C SDK1 Silent p.P299P 0.09 TCGA-ER-A1A1-06 8 132051750 132051750 G A ADCY8 Missense_Mutation p.T277M 0.09 deleterious(0) possibly_damaging(0.814) TCGA-ER-A1A1-06 8 38839233 38839233 C T HTRA4 Missense_Mutation p.P354L 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A1A1-06 8 82441826 82441826 C T FABP12 Silent p.R31R 0.08 TCGA-ER-A1A1-06 9 116153101 116153101 G A ALAD Missense_Mutation p.P125L 0.20 deleterious(0.04) probably_damaging(0.969) TCGA-ER-A1A1-06 9 122075601 122075601 G A BRINP1 Silent p.F11F 0.09 TCGA-ER-A1A1-06 X 105152843 105152843 C T NRK Nonsense_Mutation p.Q405* 0.13 TCGA-ER-A1A1-06 X 130409049 130409049 A T IGSF1 Nonsense_Mutation p.Y1137* 0.06 TCGA-ER-A1A1-06 X 135618348 135618348 G A VGLL1 Missense_Mutation p.E57K 0.11 tolerated(0.67) benign(0.021) TCGA-ER-A1A1-06 X 13624562 13624562 T C EGFL6 Silent p.F195F 0.10 TCGA-ER-A1A1-06 X 140984934 140984934 G A MAGEC3 Missense_Mutation p.V464M 0.08 tolerated(0.12) benign(0.133) TCGA-ER-A1A1-06 X 141290915 141290915 G A MAGEC2 Missense_Mutation p.R287W 0.15 deleterious(0.04) benign(0.042) TCGA-ER-A1A1-06 X 142718516 142718516 G A SLITRK4 Nonsense_Mutation p.Q137* 0.08 TCGA-ER-A1A1-06 X 142718517 142718517 G A SLITRK4 Silent p.L136L 0.10 TCGA-ER-A1A1-06 X 152483038 152483038 G A MAGEA1 5'UTR 0.15 TCGA-ER-A1A1-06 X 153421872 153421872 C T OPN1LW Missense_Mutation p.P283L 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A1A1-06 X 15580108 15580108 G A ACE2 Missense_Mutation p.P780S 0.11 deleterious_low_confidence(0) benign(0.38) TCGA-ER-A1A1-06 X 3002495 3002495 G A ARSF Silent p.G206G 0.11 TCGA-ER-A1A1-06 X 3241234 3241234 G A MXRA5 Missense_Mutation p.P831L 0.16 deleterious(0.03) benign(0.154) TCGA-ER-A1A1-06 X 37027728 37027728 C T FAM47C Silent p.R415R 0.10 TCGA-ER-A1A1-06 X 78618594 78618594 C T ITM2A Missense_Mutation p.D96N 0.17 tolerated(0.32) benign(0.001) TCGA-ER-A1A1-06 X 83128266 83128266 G A CYLC1 Missense_Mutation p.E184K 0.12 tolerated(0.19) possibly_damaging(0.486) TCGA-ER-A2NB-01 10 117059735 117059735 C T ATRNL1 Silent p.G869G 0.17 TCGA-ER-A2NB-01 10 26241033 26241033 C A MYO3A 5'UTR 0.17 TCGA-ER-A2NB-01 10 95380467 95380467 G A PDE6C Missense_Mutation p.G187S 0.08 deleterious(0.03) benign(0.298) TCGA-ER-A2NB-01 11 118827131 118827131 C A UPK2 Missense_Mutation p.A24D 0.18 deleterious(0.01) unknown(0) TCGA-ER-A2NB-01 11 123813903 123813903 A C OR6T1 Missense_Mutation p.S215A 0.06 tolerated(1) benign(0.006) TCGA-ER-A2NB-01 11 123847612 123847612 G A OR10S1 Missense_Mutation p.L263F 0.22 tolerated(0.07) benign(0.038) TCGA-ER-A2NB-01 11 6593235 6593235 A T DNHD1 3'UTR 0.06 TCGA-ER-A2NB-01 12 109949049 109949049 G A UBE3B Missense_Mutation p.D633N 0.09 tolerated(0.13) benign(0.001) TCGA-ER-A2NB-01 14 103405977 103405977 G A CDC42BPB Silent p.D1599D 0.31 TCGA-ER-A2NB-01 14 20586099 20586099 C A OR4K17 Silent p.T178T 0.27 TCGA-ER-A2NB-01 14 22891797 22891797 C T TRDV2 Missense_Mutation p.P37S 0.08 tolerated(0.93) benign(0.033) TCGA-ER-A2NB-01 14 74823852 74823852 C T VRTN Silent p.G122G 0.14 TCGA-ER-A2NB-01 14 75201687 75201687 C T FCF1 3'UTR 0.08 TCGA-ER-A2NB-01 15 45003745 45003745 A T B2M Translation_Start_Site p.M1? 0.28 deleterious(0) possibly_damaging(0.456) TCGA-ER-A2NB-01 15 88472306 88472306 G C NTRK3 Intron 0.24 TCGA-ER-A2NB-01 16 20348693 20348693 G A UMOD Missense_Mutation p.R554W 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A2NB-01 16 9857593 9857593 C G GRIN2A Missense_Mutation p.D1270H 0.13 tolerated(0.18) possibly_damaging(0.56) TCGA-ER-A2NB-01 17 10304723 10304723 C T MYH8 Missense_Mutation p.A993T 0.09 deleterious(0.04) benign(0.14) TCGA-ER-A2NB-01 17 12883489 12883489 G T ARHGAP44 Silent p.P626P 0.11 TCGA-ER-A2NB-01 17 2202561 2202561 C T SMG6 Missense_Mutation p.A496T 0.21 tolerated(0.79) benign(0.002) TCGA-ER-A2NB-01 17 40180231 40180231 C T ZNF385C Missense_Mutation p.R335Q 0.06 tolerated(0.23) benign(0.022) TCGA-ER-A2NB-01 17 61278279 61278279 C T TANC2 Missense_Mutation p.P170S 0.26 deleterious(0.03) probably_damaging(0.988) TCGA-ER-A2NB-01 17 75210034 75210034 G A SEC14L1 Missense_Mutation p.G693S 0.16 tolerated(0.28) probably_damaging(0.999) TCGA-ER-A2NB-01 18 19996184 19996184 G C CTAGE1 Missense_Mutation p.P531A 0.06 tolerated(0.08) possibly_damaging(0.767) TCGA-ER-A2NB-01 18 6943282 6943282 A C LAMA1 Silent p.R2988R 0.13 TCGA-ER-A2NB-01 18 77067094 77067094 G A ATP9B Missense_Mutation p.V545M 0.21 deleterious(0.01) possibly_damaging(0.658) TCGA-ER-A2NB-01 19 21131712 21131712 G C ZNF85 Missense_Mutation p.C131S 0.06 deleterious(0.04) benign(0.002) TCGA-ER-A2NB-01 19 42485697 42485697 T C ATP1A3 Missense_Mutation p.K478R 0.17 tolerated(0.23) possibly_damaging(0.633) TCGA-ER-A2NB-01 19 42566747 42566747 G A GRIK5 Missense_Mutation p.A134V 0.07 tolerated(0.48) possibly_damaging(0.905) TCGA-ER-A2NB-01 19 46974137 46974137 C T PNMAL1 Silent p.P52P 0.17 TCGA-ER-A2NB-01 19 47910798 47910798 G T MEIS3 Missense_Mutation p.P295Q 0.14 deleterious_low_confidence(0.02) benign(0.007) TCGA-ER-A2NB-01 19 8842005 8842005 G T OR2Z1 Silent p.L205L 0.07 TCGA-ER-A2NB-01 19 9271505 9271505 G T ZNF317 Missense_Mutation p.C395F 0.09 deleterious(0) probably_damaging(0.97) TCGA-ER-A2NB-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.45 tolerated(0.06) benign(0.006) TCGA-ER-A2NB-01 1 154140405 154140405 G T TPM3 3'UTR 0.07 TCGA-ER-A2NB-01 1 155005140 155005140 T C DCST2 Intron 0.36 TCGA-ER-A2NB-01 1 155030138 155030139 - T ADAM15 Frame_Shift_Ins p.L451Ffs*14 0.26 TCGA-ER-A2NB-01 1 177249666 177249666 T - BRINP2 Frame_Shift_Del p.C452Afs*63 0.29 TCGA-ER-A2NB-01 1 190067878 190067878 C A BRINP3 Missense_Mutation p.W524L 0.26 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NB-01 1 196250003 196250003 A C KCNT2 Missense_Mutation p.L966R 0.07 tolerated(0.13) probably_damaging(0.972) TCGA-ER-A2NB-01 1 220315224 220315224 C T IARS2 Missense_Mutation p.R832C 0.33 deleterious(0) probably_damaging(0.977) TCGA-ER-A2NB-01 1 33832801 33832801 T G PHC2 Missense_Mutation p.S298R 0.08 tolerated(0.08) benign(0.089) TCGA-ER-A2NB-01 1 3669271 3669271 C T CCDC27 Missense_Mutation p.R76W 0.38 deleterious(0) probably_damaging(0.942) TCGA-ER-A2NB-01 20 49620833 49620833 C T KCNG1 Missense_Mutation p.D429N 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A2NB-01 20 57415675 57415675 G A RP4-806M20.3 5'Flank 0.12 TCGA-ER-A2NB-01 22 21134155 21134155 C T SERPIND1 Silent p.D185D 0.05 TCGA-ER-A2NB-01 22 30202841 30202841 C A ASCC2 Nonsense_Mutation p.E321* 0.18 TCGA-ER-A2NB-01 22 39626222 39626222 G A PDGFB Silent p.I156I 0.07 TCGA-ER-A2NB-01 22 40706900 40706900 T C TNRC6B Silent p.G1446G 0.11 TCGA-ER-A2NB-01 22 40754865 40754865 C T ADSL Intron 0.22 TCGA-ER-A2NB-01 2 120020788 120020788 C T STEAP3 Silent p.A457A 0.08 TCGA-ER-A2NB-01 2 153526811 153526811 T A PRPF40A Missense_Mutation p.T522S 0.16 deleterious(0) possibly_damaging(0.621) TCGA-ER-A2NB-01 2 179616651 179616651 T C TTN Intron 0.36 TCGA-ER-A2NB-01 2 179640377 179640377 T G TTN Missense_Mutation p.S2072R 0.10 TCGA-ER-A2NB-01 2 185801896 185801902 TAAAAGT AAAAGG ZNF804A Frame_Shift_Del p.H591Qfs*54 0.12 TCGA-ER-A2NB-01 2 40366564 40366564 A G SLC8A1 Missense_Mutation p.V841A 0.09 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NB-01 3 171455813 171455813 T C PLD1 Missense_Mutation p.N10S 0.35 tolerated_low_confidence(0.41) benign(0.196) TCGA-ER-A2NB-01 3 99891184 99891184 G C CMSS1 Missense_Mutation p.E202Q 0.11 tolerated(0.26) benign(0.173) TCGA-ER-A2NB-01 4 62845386 62845386 C T LPHN3 Missense_Mutation p.R903W 0.26 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NB-01 4 95497040 95497040 C G PDLIM5 Intron 0.06 TCGA-ER-A2NB-01 5 13759027 13759027 G A DNAH5 Silent p.A3449A 0.06 TCGA-ER-A2NB-01 5 145317757 145317757 G A SH3RF2 Missense_Mutation p.R89H 0.23 deleterious(0.03) benign(0.008) TCGA-ER-A2NB-01 5 153054142 153054142 C G GRIA1 Missense_Mutation p.T271S 0.23 tolerated(0.15) benign(0.001) TCGA-ER-A2NB-01 5 35954471 35954471 T C UGT3A1 Missense_Mutation p.T469A 0.21 tolerated(1) benign(0.001) TCGA-ER-A2NB-01 5 37816054 37816054 C T GDNF Missense_Mutation p.R129K 0.12 tolerated(0.51) benign(0.001) TCGA-ER-A2NB-01 6 152772230 152772230 G T SYNE1 Silent p.T1046T 0.05 TCGA-ER-A2NB-01 6 28871870 28871870 G C TRIM27 Missense_Mutation p.H507D 0.06 tolerated_low_confidence(0.13) benign(0.002) TCGA-ER-A2NB-01 6 35108611 35108611 G T TCP11 Missense_Mutation p.P26T 0.17 tolerated(0.1) benign(0.066) TCGA-ER-A2NB-01 6 35911728 35911728 G T SLC26A8 Silent p.R954R 0.15 TCGA-ER-A2NB-01 6 41874865 41874865 T A MED20 Missense_Mutation p.E195V 0.40 deleterious(0) possibly_damaging(0.765) TCGA-ER-A2NB-01 6 7581095 7581095 C T DSP Missense_Mutation p.R1558W 0.11 possibly_damaging(0.507) TCGA-ER-A2NB-01 7 115624450 115624450 G T TFEC Missense_Mutation p.Q16K 0.50 deleterious(0.04) benign(0.01) TCGA-ER-A2NB-01 7 142627261 142627261 T C TRPV5 Missense_Mutation p.T81A 0.05 deleterious(0) possibly_damaging(0.701) TCGA-ER-A2NB-01 7 27140362 27140362 G A HOXA2 Nonsense_Mutation p.Q372* 0.07 TCGA-ER-A2NB-01 7 31126128 31126128 A G ADCYAP1R1 Missense_Mutation p.Y267C 0.31 deleterious(0) probably_damaging(0.984) TCGA-ER-A2NB-01 7 31378867 31378867 A C NEUROD6 Missense_Mutation p.F6V 0.03 deleterious(0) possibly_damaging(0.587) TCGA-ER-A2NB-01 8 110477062 110477062 C T PKHD1L1 Silent p.A2667A 0.11 TCGA-ER-A2NB-01 8 143425673 143425673 G A TSNARE1 Silent p.T133T 0.12 TCGA-ER-A2NB-01 8 143845999 143845999 C T LYNX1 3'UTR 0.07 TCGA-ER-A2NB-01 9 116241803 116241803 C G RGS3 Missense_Mutation p.R150G 0.05 tolerated(0.33) benign(0.138) TCGA-ER-A2NB-01 9 35853764 35853764 G C TMEM8B Missense_Mutation p.C449S 0.11 deleterious(0) probably_damaging(0.991) TCGA-ER-A2NB-01 9 79321837 79321837 C G PRUNE2 Missense_Mutation p.E1785Q 0.14 deleterious(0) possibly_damaging(0.804) TCGA-ER-A2NB-01 9 99150590 99150590 G A ZNF367 Missense_Mutation p.R328W 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A2NB-01 X 105277631 105277631 C A SERPINA7 Missense_Mutation p.V370F 0.12 deleterious(0.02) possibly_damaging(0.78) TCGA-ER-A2NB-01 X 138856964 138856964 T C ATP11C Missense_Mutation p.T704A 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A2NB-01 X 140994100 140994100 C A MAGEC1 Missense_Mutation p.Q304K 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-ER-A2NB-01 X 23398084 23398084 C G PTCHD1 Missense_Mutation p.S243C 0.10 deleterious(0.03) possibly_damaging(0.807) TCGA-ER-A2NB-01 X 48687675 48687675 G A ERAS Missense_Mutation p.G48S 0.14 deleterious(0.03) probably_damaging(1) TCGA-ER-A2NC-06 10 105203821 105203821 G A PDCD11 Silent p.K1758K 0.46 TCGA-ER-A2NC-06 10 123298174 123298174 C T FGFR2 Missense_Mutation p.G227E 0.69 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NC-06 10 124402843 124402843 G A DMBT1 Missense_Mutation p.E2391K 0.78 deleterious(0.03) probably_damaging(0.956) TCGA-ER-A2NC-06 10 124742977 124742977 C T PSTK Missense_Mutation p.S233L 0.48 tolerated(0.2) benign(0.031) TCGA-ER-A2NC-06 10 133967326 133967326 G A JAKMIP3 Missense_Mutation p.E711K 0.69 deleterious(0.03) benign(0.062) TCGA-ER-A2NC-06 10 28358748 28358748 C T MPP7 Missense_Mutation p.R386Q 0.53 tolerated(0.5) possibly_damaging(0.877) TCGA-ER-A2NC-06 10 55973797 55973797 C T PCDH15 Missense_Mutation p.D333N 0.66 tolerated(0.68) benign(0.042) TCGA-ER-A2NC-06 10 6258674 6258674 C T PFKFB3 Silent p.F124F 0.45 TCGA-ER-A2NC-06 10 88752040 88752040 G A RP11-96C23.5 RNA 0.27 TCGA-ER-A2NC-06 11 10786220 10786220 C T CTR9 Silent p.F513F 0.45 TCGA-ER-A2NC-06 11 118368764 118368764 G A KMT2A Missense_Mutation p.M1926I 0.48 possibly_damaging(0.681) TCGA-ER-A2NC-06 11 118368765 118368765 G A KMT2A Missense_Mutation p.A1927T 0.47 probably_damaging(0.947) TCGA-ER-A2NC-06 11 123900997 123900997 C T OR10G8 Missense_Mutation p.S223F 0.47 deleterious(0) probably_damaging(0.962) TCGA-ER-A2NC-06 11 123900998 123900998 C T OR10G8 Silent p.S223S 0.47 TCGA-ER-A2NC-06 11 128680894 128680894 A C FLI1 3'UTR 0.15 TCGA-ER-A2NC-06 11 134253705 134253705 G A B3GAT1 Missense_Mutation p.P164S 0.40 deleterious(0) possibly_damaging(0.477) TCGA-ER-A2NC-06 11 17531243 17531243 G A USH1C Missense_Mutation p.P558L 0.66 deleterious_low_confidence(0.03) benign(0.159) TCGA-ER-A2NC-06 11 18291328 18291328 G A SAA1 Missense_Mutation p.A99T 0.52 tolerated(0.26) benign(0.082) TCGA-ER-A2NC-06 11 1959779 1959779 C T TNNT3 3'UTR 0.40 TCGA-ER-A2NC-06 11 25100138 25100138 A T LUZP2 Missense_Mutation p.K325N 0.52 deleterious_low_confidence(0.03) possibly_damaging(0.836) TCGA-ER-A2NC-06 11 30433034 30433034 G A MPPED2 Missense_Mutation p.P289L 0.56 deleterious(0) probably_damaging(0.985) TCGA-ER-A2NC-06 11 33374997 33374997 C T HIPK3 Silent p.T1177T 0.55 TCGA-ER-A2NC-06 11 34226129 34226129 G A ABTB2 Missense_Mutation p.S331F 0.54 deleterious(0) possibly_damaging(0.873) TCGA-ER-A2NC-06 11 45117445 45117445 G A PRDM11 Missense_Mutation p.R30K 0.43 tolerated_low_confidence(0.65) benign(0.033) TCGA-ER-A2NC-06 11 45931758 45931758 G A PEX16 Intron 0.13 TCGA-ER-A2NC-06 11 45931759 45931759 G A PEX16 Intron 0.13 TCGA-ER-A2NC-06 11 46625317 46625317 G A HARBI1 Silent p.F271F 0.51 TCGA-ER-A2NC-06 11 46637536 46637536 G A HARBI1 Silent p.S84S 0.16 TCGA-ER-A2NC-06 11 46637537 46637537 G A HARBI1 Missense_Mutation p.S84F 0.17 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NC-06 11 55563203 55563203 C T OR5D14 Missense_Mutation p.H58Y 0.51 deleterious(0.01) benign(0.265) TCGA-ER-A2NC-06 11 555890 555890 G A C11orf35 Missense_Mutation p.A473V 0.12 tolerated(0.64) benign(0.034) TCGA-ER-A2NC-06 11 59225123 59225123 G A OR4D6 Silent p.G230G 0.52 TCGA-ER-A2NC-06 11 59282862 59282862 G A OR4D9 Silent p.Q159Q 0.57 TCGA-ER-A2NC-06 11 597425 597425 C T PHRF1 Missense_Mutation p.S250F 0.12 deleterious(0) benign(0.269) TCGA-ER-A2NC-06 11 607444 607444 C T PHRF1 Missense_Mutation p.P662L 0.12 tolerated(0.19) benign(0.003) TCGA-ER-A2NC-06 11 61503096 61503096 C T DAGLA Missense_Mutation p.R398W 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NC-06 11 66638920 66638920 T C PC Missense_Mutation p.Y118C 0.57 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NC-06 11 76371809 76371809 G A LRRC32 Silent p.L276L 0.63 TCGA-ER-A2NC-06 11 76940248 76940248 G A GDPD4 Silent p.L473L 0.60 TCGA-ER-A2NC-06 11 89405092 89405092 G A FOLH1B RNA 0.45 TCGA-ER-A2NC-06 11 93822029 93822029 G A HEPHL1 Missense_Mutation p.G730E 0.10 tolerated(1) benign(0.342) TCGA-ER-A2NC-06 11 94326773 94326773 C T PIWIL4 Silent p.L372L 0.10 TCGA-ER-A2NC-06 11 99690287 99690287 C T CNTN5 Missense_Mutation p.S23F 0.30 deleterious_low_confidence(0) benign(0.024) TCGA-ER-A2NC-06 12 100657603 100657603 C T DEPDC4 Missense_Mutation p.E76K 0.31 deleterious(0.02) benign(0.367) TCGA-ER-A2NC-06 12 113425019 113425019 C T OAS2 Silent p.F118F 0.32 TCGA-ER-A2NC-06 12 119772965 119772965 C T CCDC60 5'UTR 0.31 TCGA-ER-A2NC-06 12 124831171 124831171 A G NCOR2 Missense_Mutation p.L1433P 0.32 probably_damaging(0.983) TCGA-ER-A2NC-06 12 126138581 126138581 G A TMEM132B Missense_Mutation p.M854I 0.30 tolerated(0.44) benign(0.001) TCGA-ER-A2NC-06 12 130184600 130184600 C T TMEM132D Silent p.R241R 0.24 TCGA-ER-A2NC-06 12 15800062 15800062 T - EPS8 Frame_Shift_Del p.R523Efs*21 0.23 TCGA-ER-A2NC-06 12 24736579 24736579 G A LINC00477 RNA 0.34 TCGA-ER-A2NC-06 12 25311443 25311443 C T CASC1 Missense_Mutation p.R54Q 0.22 tolerated(0.11) benign(0.152) TCGA-ER-A2NC-06 12 4835880 4835880 C T GALNT8 Missense_Mutation p.L132F 0.48 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 12 48368481 48368481 C T COL2A1 Missense_Mutation p.E1351K 0.28 unknown(0) TCGA-ER-A2NC-06 12 48368636 48368636 C T COL2A1 Nonsense_Mutation p.W1299* 0.30 TCGA-ER-A2NC-06 12 52843335 52843335 C T KRT6B Missense_Mutation p.S332N 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A2NC-06 12 54757371 54757371 C A GPR84 Missense_Mutation p.G89C 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 12 54925358 54925358 C T NCKAP1L Silent p.P896P 0.41 TCGA-ER-A2NC-06 12 57351142 57351142 C T RDH16 Silent p.T35T 0.31 TCGA-ER-A2NC-06 12 70989867 70989867 C T PTPRB Missense_Mutation p.G407E 0.18 tolerated(0.76) benign(0.001) TCGA-ER-A2NC-06 12 7303613 7303613 G A CLSTN3 Silent p.P827P 0.63 TCGA-ER-A2NC-06 12 7527907 7527907 G A CD163L1 Missense_Mutation p.H991Y 0.25 deleterious(0.02) possibly_damaging(0.845) TCGA-ER-A2NC-06 12 7848075 7848075 G A GDF3 Missense_Mutation p.R84C 0.36 deleterious(0) probably_damaging(0.977) TCGA-ER-A2NC-06 13 114472093 114472093 G A TMEM255B Missense_Mutation p.G71E 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 13 33679773 33679773 G A STARD13 Missense_Mutation p.S1100F 0.65 deleterious(0) probably_damaging(0.988) TCGA-ER-A2NC-06 13 98662177 98662177 C T IPO5 Missense_Mutation p.L633F 0.12 deleterious(0) probably_damaging(0.965) TCGA-ER-A2NC-06 13 99171631 99171631 G A STK24 Nonsense_Mutation p.Q59* 0.55 TCGA-ER-A2NC-06 14 101515912 101515912 G A MIR655 RNA 0.30 TCGA-ER-A2NC-06 14 106622318 106622318 G A IGHV3-16 Missense_Mutation p.L10F 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.632) TCGA-ER-A2NC-06 14 107048706 107048706 C G IGHV3-53 Missense_Mutation p.R105T 0.19 tolerated_low_confidence(0.05) benign(0.177) TCGA-ER-A2NC-06 14 107131067 107131067 C G IGHV3-66 Missense_Mutation p.R105T 0.05 tolerated_low_confidence(0.06) benign(0.411) TCGA-ER-A2NC-06 14 19378162 19378162 A T OR11H12 Missense_Mutation p.D190V 0.14 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NC-06 14 20216343 20216343 G A OR4Q3 Missense_Mutation p.V253M 0.13 tolerated(0.07) benign(0.229) TCGA-ER-A2NC-06 14 20403841 20403841 G A OR4K1 Missense_Mutation p.E6K 0.20 tolerated(0.62) benign(0.001) TCGA-ER-A2NC-06 14 20482618 20482618 G A OR4K14 Silent p.I245I 0.25 TCGA-ER-A2NC-06 14 21498726 21498726 G A TPPP2 5'UTR 0.71 TCGA-ER-A2NC-06 14 22133882 22133882 G A OR4E2 Missense_Mutation p.G196R 0.33 deleterious(0.01) probably_damaging(0.936) TCGA-ER-A2NC-06 14 22509271 22509271 C T TRAV20 Missense_Mutation p.T70I 0.37 tolerated(0.25) benign(0.005) TCGA-ER-A2NC-06 14 24724283 24724283 G A TGM1 Missense_Mutation p.R608C 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-ER-A2NC-06 14 39722039 39722039 C T MIA2 Missense_Mutation p.S552L 0.31 deleterious(0.04) benign(0.247) TCGA-ER-A2NC-06 14 60903603 60903603 G A C14orf39 Missense_Mutation p.S575L 0.31 tolerated(0.09) unknown(0) TCGA-ER-A2NC-06 14 65209985 65209985 C T PLEKHG3 Missense_Mutation p.P1019L 0.31 tolerated(0.06) benign(0.16) TCGA-ER-A2NC-06 14 65260193 65260193 C T SPTB Missense_Mutation p.D730N 0.44 deleterious(0.02) benign(0.014) TCGA-ER-A2NC-06 14 70713174 70713174 C T ADAM21P1 RNA 0.27 TCGA-ER-A2NC-06 14 72944999 72944999 C T RGS6 Silent p.I272I 0.22 TCGA-ER-A2NC-06 14 77808281 77808281 C A TMED8 Missense_Mutation p.G271C 0.24 deleterious(0.02) probably_damaging(0.963) TCGA-ER-A2NC-06 14 77845406 77845406 G A SAMD15 Missense_Mutation p.E549K 0.36 tolerated(1) benign(0.002) TCGA-ER-A2NC-06 14 88652025 88652025 C T KCNK10 Missense_Mutation p.E496K 0.38 deleterious_low_confidence(0) benign(0.359) TCGA-ER-A2NC-06 14 91701062 91701062 G A GPR68 Silent p.F111F 0.43 TCGA-ER-A2NC-06 14 92150271 92150271 C T CATSPERB Missense_Mutation p.G294E 0.29 deleterious(0) probably_damaging(0.929) TCGA-ER-A2NC-06 14 92159496 92159496 G A CATSPERB Missense_Mutation p.R269C 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-ER-A2NC-06 14 93393935 93393935 G A CHGA Silent p.L76L 0.34 TCGA-ER-A2NC-06 14 94912910 94912910 C T SERPINA11 Silent p.Q225Q 0.35 TCGA-ER-A2NC-06 15 28632778 28632778 G A GOLGA8F Missense_Mutation p.G449E 0.16 tolerated(1) benign(0.001) TCGA-ER-A2NC-06 15 33835867 33835867 G A RYR3 Missense_Mutation p.D231N 0.30 probably_damaging(0.975) TCGA-ER-A2NC-06 15 34640773 34640773 C T NUTM1 Missense_Mutation p.S207F 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-ER-A2NC-06 15 34640774 34640774 C T NUTM1 Silent p.S207S 0.33 TCGA-ER-A2NC-06 15 41029489 41029489 G A RMDN3 Silent p.S425S 0.30 TCGA-ER-A2NC-06 15 41029490 41029490 G A RMDN3 Missense_Mutation p.S425F 0.31 deleterious(0) possibly_damaging(0.851) TCGA-ER-A2NC-06 15 42458808 42458808 G A VPS39 Missense_Mutation p.S520F 0.33 deleterious(0) possibly_damaging(0.88) TCGA-ER-A2NC-06 15 50544901 50544901 G A HDC Silent p.F286F 0.33 TCGA-ER-A2NC-06 15 56946417 56946417 G A ZNF280D Missense_Mutation p.P731L 0.27 tolerated(0.09) benign(0.03) TCGA-ER-A2NC-06 15 64673543 64673543 G A KIAA0101 Missense_Mutation p.P10S 0.33 tolerated(0.16) benign(0.004) TCGA-ER-A2NC-06 15 79760663 79760663 C T KIAA1024 Silent p.I896I 0.33 TCGA-ER-A2NC-06 15 81650588 81650588 C T TMC3 Silent p.R215R 0.31 TCGA-ER-A2NC-06 15 91478513 91478513 C T UNC45A 5'Flank 0.23 TCGA-ER-A2NC-06 16 20497934 20497934 G A ACSM2A Silent p.G556G 0.31 TCGA-ER-A2NC-06 16 20548523 20548523 C T ACSM2B 3'UTR 0.39 TCGA-ER-A2NC-06 16 20999096 20999096 C T DNAH3 Silent p.S2267S 0.35 TCGA-ER-A2NC-06 16 23767468 23767468 C T CHP2 Silent p.D102D 0.49 TCGA-ER-A2NC-06 16 30997842 30997842 C T HSD3B7 Missense_Mutation p.P141S 0.30 tolerated(0.32) benign(0.257) TCGA-ER-A2NC-06 16 3607670 3607670 C T NLRC3 Missense_Mutation p.E722K 0.16 deleterious(0.02) possibly_damaging(0.793) TCGA-ER-A2NC-06 16 4829767 4829767 C T SEPT12 Silent p.V249V 0.41 TCGA-ER-A2NC-06 16 51172857 51172857 G A SALL1 Silent p.F1092F 0.28 TCGA-ER-A2NC-06 16 57470617 57470617 G A CIAPIN1 Missense_Mutation p.S113F 0.37 deleterious(0.01) possibly_damaging(0.464) TCGA-ER-A2NC-06 16 67709904 67709904 G A GFOD2 Silent p.F104F 0.33 TCGA-ER-A2NC-06 16 70288564 70288564 G A AARS Missense_Mutation p.P787L 0.38 deleterious(0.03) benign(0.434) TCGA-ER-A2NC-06 16 70889118 70889118 G A HYDIN Missense_Mutation p.S4119F 0.58 benign(0.071) TCGA-ER-A2NC-06 16 71103256 71103256 C T HYDIN Missense_Mutation p.E630K 0.27 benign(0.056) TCGA-ER-A2NC-06 16 71571808 71571808 C T CHST4 3'UTR 0.35 TCGA-ER-A2NC-06 16 723122 723122 C G RHOT2 Silent p.A574A 0.33 TCGA-ER-A2NC-06 16 75513562 75513562 G A CHST6 Silent p.F55F 0.35 TCGA-ER-A2NC-06 16 89180872 89180872 T C ACSF3 Missense_Mutation p.L368P 0.36 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NC-06 16 89347137 89347137 G A ANKRD11 Missense_Mutation p.P1938L 0.32 possibly_damaging(0.449) TCGA-ER-A2NC-06 16 89347138 89347138 G T ANKRD11 Missense_Mutation p.P1938T 0.31 benign(0.093) TCGA-ER-A2NC-06 17 10356643 10356643 C T MYH4 Silent p.V979V 0.33 TCGA-ER-A2NC-06 17 10370070 10370070 G A MYH4 5'UTR 0.24 TCGA-ER-A2NC-06 17 10538768 10538768 G A MYH3 Missense_Mutation p.S1363F 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A2NC-06 17 12639597 12639597 C T MYOCD Missense_Mutation p.P179S 0.26 tolerated(0.22) possibly_damaging(0.69) TCGA-ER-A2NC-06 17 12649390 12649390 G A MYOCD Splice_Site p.X375_splice 0.29 TCGA-ER-A2NC-06 17 1371284 1371284 G A MYO1C Missense_Mutation p.T965I 0.38 deleterious(0.05) possibly_damaging(0.521) TCGA-ER-A2NC-06 17 1641034 1641034 C T WDR81 3'UTR 0.33 TCGA-ER-A2NC-06 17 17700192 17700192 C T RAI1 Silent p.F1310F 0.49 TCGA-ER-A2NC-06 17 17700193 17700193 C T RAI1 Nonsense_Mutation p.Q1311* 0.48 TCGA-ER-A2NC-06 17 21102044 21102044 T G TMEM11 Missense_Mutation p.K58Q 0.22 tolerated(0.31) benign(0.008) TCGA-ER-A2NC-06 17 21102045 21102045 G T TMEM11 Nonsense_Mutation p.Y57* 0.22 TCGA-ER-A2NC-06 17 2323843 2323843 G A METTL16 Silent p.F370F 0.35 TCGA-ER-A2NC-06 17 25924400 25924400 C T KSR1 Missense_Mutation p.S332F 0.50 deleterious(0.02) possibly_damaging(0.522) TCGA-ER-A2NC-06 17 27020711 27020711 C T SUPT6H Intron 0.53 TCGA-ER-A2NC-06 17 36498979 36498979 G A GPR179 Missense_Mutation p.P232S 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 17 3844928 3844928 G A ATP2A3 Silent p.I522I 0.40 TCGA-ER-A2NC-06 17 39538630 39538630 C T KRT34 5'UTR 0.49 TCGA-ER-A2NC-06 17 39661430 39661430 G A KRT13 Silent p.L125L 0.47 TCGA-ER-A2NC-06 17 40839817 40839817 C T CNTNAP1 Missense_Mutation p.P375L 0.25 deleterious(0.02) probably_damaging(0.965) TCGA-ER-A2NC-06 17 41903166 41903166 G A MPP3 Silent p.I189I 0.23 TCGA-ER-A2NC-06 17 42828618 42828618 T C DBF4B Silent p.G615G 0.48 TCGA-ER-A2NC-06 17 45892603 45892603 G A OSBPL7 Missense_Mutation p.S412F 0.30 deleterious(0.01) benign(0.303) TCGA-ER-A2NC-06 17 56387372 56387372 G A BZRAP1 Nonsense_Mutation p.Q1283* 0.54 TCGA-ER-A2NC-06 17 62022955 62022955 T C SCN4A Missense_Mutation p.N1162S 0.31 deleterious(0) probably_damaging(0.947) TCGA-ER-A2NC-06 17 66902222 66902222 G A ABCA8 Silent p.F747F 0.28 TCGA-ER-A2NC-06 17 6982189 6982189 C G CLEC10A 5'UTR 0.28 TCGA-ER-A2NC-06 17 6982190 6982190 C T CLEC10A 5'UTR 0.27 TCGA-ER-A2NC-06 17 70644980 70644980 G A SLC39A11 Silent p.Y304Y 0.52 TCGA-ER-A2NC-06 17 71165665 71165665 C A SSTR2 Silent p.L69L 0.42 TCGA-ER-A2NC-06 17 71410896 71410896 G A SDK2 Missense_Mutation p.P791S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A2NC-06 17 72368424 72368424 C T GPR142 Silent p.I358I 0.63 TCGA-ER-A2NC-06 17 74004881 74004881 C T EVPL Missense_Mutation p.E1469K 0.50 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NC-06 17 7671322 7671322 G A DNAH2 Missense_Mutation p.M1260I 0.44 possibly_damaging(0.877) TCGA-ER-A2NC-06 17 77755762 77755762 C A CBX2 Intron 0.26 TCGA-ER-A2NC-06 17 7806015 7806015 C T CHD3 Silent p.L1173L 0.39 TCGA-ER-A2NC-06 17 79650840 79650840 C T ARL16 Missense_Mutation p.G6R 0.44 deleterious_low_confidence(0) benign(0) TCGA-ER-A2NC-06 17 8052955 8052955 G A PER1 Silent p.F226F 0.44 TCGA-ER-A2NC-06 18 20936574 20936574 C T TMEM241 Missense_Mutation p.G219S 0.29 tolerated(1) benign(0.012) TCGA-ER-A2NC-06 18 47421481 47421481 C T MYO5B Missense_Mutation p.V959I 0.30 tolerated(0.16) benign(0.02) TCGA-ER-A2NC-06 18 50734082 50734082 G A DCC Missense_Mutation p.E586K 0.38 tolerated(0.45) benign(0.438) TCGA-ER-A2NC-06 18 63477219 63477219 G A CDH7 Missense_Mutation p.E164K 0.37 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NC-06 18 70526090 70526090 C T NETO1 Missense_Mutation p.G147E 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A2NC-06 18 73130764 73130764 T C SMIM21 Silent p.K79K 0.36 TCGA-ER-A2NC-06 19 11417474 11417474 G A TSPAN16 Intron 0.47 TCGA-ER-A2NC-06 19 13227162 13227162 G A TRMT1 Missense_Mutation p.L18F 0.38 tolerated_low_confidence(0.08) benign(0.004) TCGA-ER-A2NC-06 19 17001310 17001310 G A F2RL3 Missense_Mutation p.E346K 0.42 deleterious(0.01) probably_damaging(0.964) TCGA-ER-A2NC-06 19 17743613 17743613 C T UNC13A Missense_Mutation p.D1136N 0.33 tolerated(0.25) benign(0.008) TCGA-ER-A2NC-06 19 17743614 17743614 C T UNC13A Silent p.K1135K 0.33 TCGA-ER-A2NC-06 19 18729233 18729233 C T TMEM59L Silent p.S277S 0.29 TCGA-ER-A2NC-06 19 19304881 19304881 C T RFXANK Silent p.L42L 0.38 TCGA-ER-A2NC-06 19 22939486 22939486 T G ZNF99 3'Flank 0.33 TCGA-ER-A2NC-06 19 34921554 34921554 C G UBA2 Nonsense_Mutation p.S71* 0.06 TCGA-ER-A2NC-06 19 36159518 36159518 G A UPK1A Missense_Mutation p.G83S 0.48 tolerated(0.4) possibly_damaging(0.702) TCGA-ER-A2NC-06 19 36369000 36369000 C T APLP1 Silent p.T523T 0.36 TCGA-ER-A2NC-06 19 36884104 36884104 G A ZFP82 Missense_Mutation p.H380Y 0.39 tolerated(0.36) probably_damaging(0.999) TCGA-ER-A2NC-06 19 38127133 38127133 C T ZFP30 Nonsense_Mutation p.W103* 0.28 TCGA-ER-A2NC-06 19 39078067 39078067 C T RYR1 3'Flank 0.40 TCGA-ER-A2NC-06 19 39303139 39303139 G A LGALS4 Silent p.P22P 0.28 TCGA-ER-A2NC-06 19 39303140 39303140 G A LGALS4 Missense_Mutation p.P22L 0.30 deleterious(0.03) possibly_damaging(0.735) TCGA-ER-A2NC-06 19 40222125 40222125 G A CLC Silent p.S108S 0.36 TCGA-ER-A2NC-06 19 40719064 40719064 C T MAP3K10 Silent p.I602I 0.43 TCGA-ER-A2NC-06 19 41450331 41450331 C T AC092071.1 5'Flank 0.31 TCGA-ER-A2NC-06 19 41707228 41707228 C T CYP2S1 Silent p.T309T 0.33 TCGA-ER-A2NC-06 19 41748886 41748886 C T AXL Missense_Mutation p.L471F 0.31 tolerated(0.09) benign(0.049) TCGA-ER-A2NC-06 19 42260627 42260627 C T CEA Intron 0.38 TCGA-ER-A2NC-06 19 42729578 42729578 C T ZNF526 Silent p.F341F 0.49 TCGA-ER-A2NC-06 19 4292670 4292670 C T TMIGD2 Missense_Mutation p.V259I 0.34 tolerated(0.3) benign(0.417) TCGA-ER-A2NC-06 19 43359863 43359863 C T PSG10P 5'Flank 0.29 TCGA-ER-A2NC-06 19 43586766 43586766 G A PSG2 5'UTR 0.40 TCGA-ER-A2NC-06 19 45202385 45202385 C T CEACAM16 5'Flank 0.39 TCGA-ER-A2NC-06 19 45202386 45202386 C T CEACAM16 5'Flank 0.39 TCGA-ER-A2NC-06 19 46498700 46498700 C T CCDC61 5'Flank 0.52 TCGA-ER-A2NC-06 19 4816401 4816401 G A TICAM1 Silent p.F663F 0.25 TCGA-ER-A2NC-06 19 4902794 4902794 C T ARRDC5 Missense_Mutation p.R29K 0.27 tolerated(0.64) benign(0) TCGA-ER-A2NC-06 19 49100031 49100031 C T SULT2B1 Silent p.F227F 0.15 TCGA-ER-A2NC-06 19 49132013 49132013 G A SPHK2 Silent p.L316L 0.35 TCGA-ER-A2NC-06 19 49227675 49227675 C T RASIP1 Silent p.L821L 0.34 TCGA-ER-A2NC-06 19 49686006 49686006 C T TRPM4 Nonsense_Mutation p.Q479* 0.38 TCGA-ER-A2NC-06 19 51518136 51518136 C T KLK10 Missense_Mutation p.G251S 0.41 tolerated(0.29) probably_damaging(0.971) TCGA-ER-A2NC-06 19 51958927 51958927 C T SIGLEC8 Missense_Mutation p.G266R 0.32 tolerated(0.81) benign(0.026) TCGA-ER-A2NC-06 19 51960830 51960830 G A SIGLEC8 Silent p.S206S 0.48 TCGA-ER-A2NC-06 19 53740523 53740523 G A ZNF677 Missense_Mutation p.P486L 0.34 deleterious(0.02) benign(0.181) TCGA-ER-A2NC-06 19 55086385 55086385 C T LILRA2 Silent p.F180F 0.32 TCGA-ER-A2NC-06 19 56203261 56203261 C T EPN1 Missense_Mutation p.P388S 0.26 tolerated(0.16) benign(0.001) TCGA-ER-A2NC-06 19 56369317 56369317 C T NLRP4 Silent p.F186F 0.29 TCGA-ER-A2NC-06 19 56369483 56369483 G A NLRP4 Missense_Mutation p.E242K 0.26 tolerated(0.16) benign(0.152) TCGA-ER-A2NC-06 19 56369851 56369851 C T NLRP4 Silent p.T364T 0.31 TCGA-ER-A2NC-06 19 56539800 56539800 G C NLRP5 Missense_Mutation p.R734P 0.34 deleterious(0.01) possibly_damaging(0.693) TCGA-ER-A2NC-06 19 58983100 58983100 A G ZNF324 Missense_Mutation p.K414R 0.23 tolerated(0.38) possibly_damaging(0.826) TCGA-ER-A2NC-06 19 603592 603592 C T HCN2 Silent p.I227I 0.43 TCGA-ER-A2NC-06 19 615813 615813 T G HCN2 Missense_Mutation p.L670R 0.17 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NC-06 19 9060196 9060196 C T MUC16 Missense_Mutation p.G9084S 0.39 unknown(0) TCGA-ER-A2NC-06 19 9072100 9072100 C T MUC16 Missense_Mutation p.E5116K 0.34 unknown(0) TCGA-ER-A2NC-06 1 109635608 109635608 C T TMEM167B Missense_Mutation p.S36L 0.33 tolerated(0.07) possibly_damaging(0.889) TCGA-ER-A2NC-06 1 109839796 109839796 G A MYBPHL Missense_Mutation p.P149L 0.31 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NC-06 1 110086536 110086536 C T GPR61 Missense_Mutation p.L298F 0.34 tolerated(0.49) benign(0.02) TCGA-ER-A2NC-06 1 111441773 111441773 C T CD53 Silent p.L206L 0.50 TCGA-ER-A2NC-06 1 114515735 114515735 C T HIPK1 Silent p.S1078S 0.36 TCGA-ER-A2NC-06 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.38 deleterious(0) possibly_damaging(0.534) TCGA-ER-A2NC-06 1 118558710 118558710 G A SPAG17 Missense_Mutation p.H1389Y 0.43 deleterious(0.01) possibly_damaging(0.602) TCGA-ER-A2NC-06 1 119427747 119427747 G A TBX15 Missense_Mutation p.P367S 0.26 tolerated(0.09) benign(0.012) TCGA-ER-A2NC-06 1 12885166 12885166 C T PRAMEF11 Silent p.L315L 0.28 TCGA-ER-A2NC-06 1 13669028 13669028 C T PRAMEF14 Silent p.R434R 0.44 TCGA-ER-A2NC-06 1 145473309 145473309 C T ANKRD34A 5'UTR 0.40 TCGA-ER-A2NC-06 1 150310701 150310701 G A PRPF3 Silent p.S367S 0.07 TCGA-ER-A2NC-06 1 152127263 152127263 C T RPTN Missense_Mutation p.R771Q 0.37 tolerated(1) benign(0.006) TCGA-ER-A2NC-06 1 152552383 152552383 G A LCE3D Silent p.C10C 0.29 TCGA-ER-A2NC-06 1 152759753 152759753 G A LCE1E Splice_Site 0.33 TCGA-ER-A2NC-06 1 152777793 152777793 G A LCE1C Silent p.S54S 0.50 TCGA-ER-A2NC-06 1 158298804 158298804 C T CD1B Missense_Mutation p.R296K 0.26 tolerated(0.13) benign(0.006) TCGA-ER-A2NC-06 1 160535509 160535509 C T CD84 Missense_Mutation p.E25K 0.41 deleterious(0.03) benign(0.021) TCGA-ER-A2NC-06 1 16060449 16060449 C T PLEKHM2 3'UTR 0.33 TCGA-ER-A2NC-06 1 165218664 165218664 G A LMX1A Silent p.S159S 0.40 TCGA-ER-A2NC-06 1 172526543 172526543 C T SUCO Silent p.V189V 0.35 TCGA-ER-A2NC-06 1 172558246 172558246 C T SUCO Missense_Mutation p.P669S 0.42 tolerated(0.23) benign(0.008) TCGA-ER-A2NC-06 1 17607261 17607261 G A PADI3 Silent p.R577R 0.29 TCGA-ER-A2NC-06 1 176738746 176738746 G A PAPPA2 Missense_Mutation p.E1443K 0.29 tolerated(0.14) benign(0.007) TCGA-ER-A2NC-06 1 176838039 176838039 G A ASTN1 Silent p.N1196N 0.38 TCGA-ER-A2NC-06 1 186934717 186934717 C T PLA2G4A Missense_Mutation p.P586S 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 1 19166648 19166648 G A TAS1R2 Silent p.I655I 0.34 TCGA-ER-A2NC-06 1 196711158 196711158 G A CFH Nonsense_Mutation p.W1037* 0.36 TCGA-ER-A2NC-06 1 196757343 196757343 T C CFHR3 Intron 0.71 TCGA-ER-A2NC-06 1 202709872 202709872 G A KDM5B Missense_Mutation p.P1005L 0.22 deleterious(0) probably_damaging(0.939) TCGA-ER-A2NC-06 1 203188413 203188413 C T CHIT1 Silent p.Q320Q 0.39 TCGA-ER-A2NC-06 1 205042853 205042853 C T CNTN2 Missense_Mutation p.S1028F 0.40 tolerated(0.16) benign(0.003) TCGA-ER-A2NC-06 1 207235906 207235906 C T PFKFB2 Intron 0.37 TCGA-ER-A2NC-06 1 212208753 212208753 G A INTS7 Silent p.F9F 0.32 TCGA-ER-A2NC-06 1 213046037 213046037 C T FLVCR1 Missense_Mutation p.R301W 0.22 deleterious(0) benign(0.354) TCGA-ER-A2NC-06 1 214816342 214816342 C T CENPF Missense_Mutation p.S1554F 0.38 benign(0.076) TCGA-ER-A2NC-06 1 216074170 216074170 G A USH2A Missense_Mutation p.R2460C 0.38 probably_damaging(0.982) TCGA-ER-A2NC-06 1 220089084 220089084 C T SLC30A10 Missense_Mutation p.E389K 0.29 tolerated(0.19) benign(0.088) TCGA-ER-A2NC-06 1 220374016 220374016 G A RAB3GAP2 Intron 0.44 TCGA-ER-A2NC-06 1 228482539 228482539 G A OBSCN Silent p.T4247T 0.30 TCGA-ER-A2NC-06 1 229771572 229771572 C T URB2 Silent p.P404P 0.34 TCGA-ER-A2NC-06 1 23189692 23189692 C T EPHB2 Intron 0.36 TCGA-ER-A2NC-06 1 236702356 236702356 G A LGALS8 Silent p.E104E 0.20 TCGA-ER-A2NC-06 1 247007213 247007213 G A AHCTF1 Missense_Mutation p.P2146S 0.21 tolerated(0.15) benign(0.023) TCGA-ER-A2NC-06 1 247695273 247695273 C T OR2C3 Missense_Mutation p.E181K 0.44 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NC-06 1 248343371 248343371 C T OR2M2 Silent p.F28F 0.35 TCGA-ER-A2NC-06 1 248637526 248637526 C T OR2T3 Missense_Mutation p.P292L 0.11 deleterious(0) possibly_damaging(0.476) TCGA-ER-A2NC-06 1 248737184 248737184 G A OR2T34 Missense_Mutation p.P292L 0.21 deleterious(0) possibly_damaging(0.476) TCGA-ER-A2NC-06 1 248738036 248738036 G A OR2T34 Missense_Mutation p.S8F 0.25 tolerated(0.59) benign(0.01) TCGA-ER-A2NC-06 1 33985537 33985537 C T CSMD2 Silent p.L3393L 0.18 TCGA-ER-A2NC-06 1 38197177 38197177 G A EPHA10 Silent p.T523T 0.34 TCGA-ER-A2NC-06 1 43630333 43630333 G A EBNA1BP2 Missense_Mutation p.P339L 0.31 tolerated(0.17) benign(0.007) TCGA-ER-A2NC-06 1 43630334 43630334 G A EBNA1BP2 Missense_Mutation p.P339S 0.31 tolerated(0.14) benign(0.037) TCGA-ER-A2NC-06 1 45226095 45226095 G A KIF2C Missense_Mutation p.S504N 0.29 tolerated(0.08) benign(0.443) TCGA-ER-A2NC-06 1 47571801 47571801 G A CYP4Z1 Missense_Mutation p.E357K 0.32 deleterious(0.01) benign(0.043) TCGA-ER-A2NC-06 1 50575633 50575633 G A ELAVL4 Intron 0.35 TCGA-ER-A2NC-06 1 54344370 54344370 G A YIPF1 Missense_Mutation p.S74F 0.26 deleterious(0.01) possibly_damaging(0.553) TCGA-ER-A2NC-06 1 54665886 54665886 C T MRPL37 5'UTR 0.33 TCGA-ER-A2NC-06 1 55078336 55078336 G A FAM151A Missense_Mutation p.P208L 0.38 tolerated(0.13) benign(0.02) TCGA-ER-A2NC-06 1 60370618 60370618 C T CYP2J2 Missense_Mutation p.M372I 0.27 tolerated(0.15) benign(0.049) TCGA-ER-A2NC-06 1 67148038 67148038 C T SGIP1 Missense_Mutation p.P434L 0.35 tolerated(0.73) benign(0.002) TCGA-ER-A2NC-06 1 67581048 67581048 T C C1orf141 Silent p.E111E 0.33 TCGA-ER-A2NC-06 1 71478162 71478162 C T PTGER3 Missense_Mutation p.M301I 0.29 tolerated(0.17) benign(0.06) TCGA-ER-A2NC-06 1 79002162 79002162 C T PTGFR Silent p.L290L 0.32 TCGA-ER-A2NC-06 1 89582786 89582786 C T GBP2 Missense_Mutation p.E253K 0.31 deleterious(0.01) possibly_damaging(0.512) TCGA-ER-A2NC-06 1 95538483 95538483 C T ALG14 5'UTR 0.29 TCGA-ER-A2NC-06 1 98187201 98187201 T G DPYD Silent p.I116I 0.49 TCGA-ER-A2NC-06 20 13055015 13055015 C T SPTLC3 Silent p.I159I 0.24 TCGA-ER-A2NC-06 20 18022346 18022346 C T OVOL2 Missense_Mutation p.D115N 0.54 tolerated(0.15) benign(0.022) TCGA-ER-A2NC-06 20 21369916 21369916 T G XRN2 Nonsense_Mutation p.Y931* 0.07 TCGA-ER-A2NC-06 20 25057171 25057171 G A VSX1 Missense_Mutation p.S275F 0.54 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NC-06 20 30507728 30507728 G A TTLL9 Nonsense_Mutation p.W189* 0.53 TCGA-ER-A2NC-06 20 3128650 3128650 A G FASTKD5 Missense_Mutation p.L356S 0.61 deleterious(0) probably_damaging(0.974) TCGA-ER-A2NC-06 20 33596548 33596548 C A TRPC4AP Missense_Mutation p.S505I 0.20 deleterious(0.01) possibly_damaging(0.828) TCGA-ER-A2NC-06 20 34136575 34136575 C T ERGIC3 Silent p.F214F 0.63 TCGA-ER-A2NC-06 20 35563580 35563580 G A SAMHD1 Missense_Mutation p.P121S 0.16 tolerated(0.05) benign(0.443) TCGA-ER-A2NC-06 20 40709378 40709378 G A PTPRT 3'UTR 0.47 TCGA-ER-A2NC-06 20 47611094 47611094 G C ARFGEF2 Missense_Mutation p.G1027A 0.13 tolerated(0.3) benign(0.004) TCGA-ER-A2NC-06 20 4768870 4768870 C T RASSF2 Silent p.T228T 0.22 TCGA-ER-A2NC-06 20 47991437 47991437 G A KCNB1 Silent p.F220F 0.23 TCGA-ER-A2NC-06 20 62520563 62520563 C T TPD52L2 Missense_Mutation p.S189L 0.70 deleterious(0.01) benign(0.415) TCGA-ER-A2NC-06 21 10971337 10971337 G A TPTE Missense_Mutation p.P7L 0.28 deleterious_low_confidence(0.01) benign(0.013) TCGA-ER-A2NC-06 21 11014938 11014938 C T TPTE Intron 0.69 TCGA-ER-A2NC-06 21 43338986 43338986 G A C2CD2 Silent p.I192I 0.68 TCGA-ER-A2NC-06 21 45844767 45844767 C T TRPM2 Silent p.I1194I 0.78 TCGA-ER-A2NC-06 22 22869718 22869718 G A ZNF280A Silent p.F79F 0.34 TCGA-ER-A2NC-06 22 23610670 23610670 C T BCR Nonsense_Mutation p.Q610* 0.39 TCGA-ER-A2NC-06 22 23968225 23968225 C T C22orf43 Silent p.E73E 0.35 TCGA-ER-A2NC-06 22 36007060 36007060 C T MB Silent p.K63K 0.28 TCGA-ER-A2NC-06 22 36537577 36537577 C T APOL3 Missense_Mutation p.E294K 0.29 tolerated(0.1) benign(0.344) TCGA-ER-A2NC-06 22 36685152 36685152 G A MYH9 Silent p.S1512S 0.29 TCGA-ER-A2NC-06 22 36685153 36685153 G A MYH9 Missense_Mutation p.S1512F 0.29 probably_damaging(0.992) TCGA-ER-A2NC-06 22 36712663 36712663 G A MYH9 Missense_Mutation p.R427C 0.16 probably_damaging(0.979) TCGA-ER-A2NC-06 22 37770430 37770430 G A ELFN2 Missense_Mutation p.P382L 0.32 tolerated(0.26) benign(0.043) TCGA-ER-A2NC-06 22 37891784 37891784 G A CARD10 Silent p.T762T 0.42 TCGA-ER-A2NC-06 22 37891785 37891785 G A CARD10 Missense_Mutation p.T762I 0.42 deleterious(0) probably_damaging(0.988) TCGA-ER-A2NC-06 22 38131075 38131075 C T TRIOBP Missense_Mutation p.P1578S 0.38 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-ER-A2NC-06 22 38320719 38320719 C T MICALL1 Silent p.S359S 0.42 TCGA-ER-A2NC-06 22 39448358 39448358 G A APOBEC3F Missense_Mutation p.D335N 0.35 deleterious(0.01) possibly_damaging(0.672) TCGA-ER-A2NC-06 22 39711548 39711548 G T RPL3 Missense_Mutation p.P172T 0.40 tolerated(0.07) benign(0.078) TCGA-ER-A2NC-06 22 40283633 40283633 G A ENTHD1 Silent p.I40I 0.26 TCGA-ER-A2NC-06 22 42033664 42033664 C T XRCC6 Silent p.S214S 0.20 TCGA-ER-A2NC-06 22 50217637 50217637 G A BRD1 Missense_Mutation p.T110M 0.23 tolerated(0.13) benign(0.218) TCGA-ER-A2NC-06 2 103120032 103120032 C T SLC9A4 Silent p.I282I 0.44 TCGA-ER-A2NC-06 2 103318936 103318936 G A SLC9A2 Missense_Mutation p.R607K 0.45 tolerated(0.67) benign(0.005) TCGA-ER-A2NC-06 2 113670551 113670551 C T IL37 5'UTR 0.24 TCGA-ER-A2NC-06 2 138375985 138375985 G A THSD7B Missense_Mutation p.E1200K 0.34 deleterious(0.03) unknown(0) TCGA-ER-A2NC-06 2 141299345 141299345 T A LRP1B Intron 0.26 TCGA-ER-A2NC-06 2 150069603 150069603 C T LYPD6B Silent p.V142V 0.47 TCGA-ER-A2NC-06 2 160824067 160824067 G A PLA2R1 Silent p.L963L 0.36 TCGA-ER-A2NC-06 2 163045640 163045640 G A FAP Missense_Mutation p.S531L 0.40 deleterious(0.01) benign(0.319) TCGA-ER-A2NC-06 2 163360984 163360984 C T KCNH7 Missense_Mutation p.R366Q 0.36 deleterious(0.03) probably_damaging(0.987) TCGA-ER-A2NC-06 2 166012399 166012399 C T SCN3A Missense_Mutation p.G349E 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-ER-A2NC-06 2 166168556 166168556 G A SCN2A Missense_Mutation p.G331E 0.29 deleterious(0.01) benign(0.041) TCGA-ER-A2NC-06 2 167055717 167055717 G A SCN9A Missense_Mutation p.P1800L 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-ER-A2NC-06 2 169764539 169764539 C T G6PC2 Missense_Mutation p.P340S 0.31 deleterious(0) benign(0.266) TCGA-ER-A2NC-06 2 179611763 179611763 C T TTN Intron 0.46 TCGA-ER-A2NC-06 2 179613608 179613608 G A TTN Intron 0.28 TCGA-ER-A2NC-06 2 179634535 179634535 C T TTN Missense_Mutation p.E2925K 0.32 TCGA-ER-A2NC-06 2 180308074 180308074 G A ZNF385B Missense_Mutation p.S440L 0.37 deleterious(0.01) benign(0.434) TCGA-ER-A2NC-06 2 188361661 188361661 C T TFPI Missense_Mutation p.G89E 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 2 192141644 192141644 C T MYO1B Missense_Mutation p.T8I 0.53 tolerated(0.08) benign(0.249) TCGA-ER-A2NC-06 2 196786857 196786857 T A DNAH7 Missense_Mutation p.N1297I 0.32 deleterious(0.01) possibly_damaging(0.782) TCGA-ER-A2NC-06 2 207426990 207426990 C T ADAM23 Nonsense_Mutation p.Q440* 0.28 TCGA-ER-A2NC-06 2 207814409 207814409 C T CPO Missense_Mutation p.S46F 0.19 tolerated(0.18) benign(0.014) TCGA-ER-A2NC-06 2 21230280 21230280 C T APOB Missense_Mutation p.E3154K 0.49 probably_damaging(0.998) TCGA-ER-A2NC-06 2 215901740 215901740 C A ABCA12 Missense_Mutation p.G308C 0.46 tolerated(0.07) probably_damaging(0.989) TCGA-ER-A2NC-06 2 217006013 217006013 C T XRCC5 Missense_Mutation p.P483S 0.25 tolerated(0.15) possibly_damaging(0.647) TCGA-ER-A2NC-06 2 220136262 220136262 G A TUBA4B RNA 0.34 TCGA-ER-A2NC-06 2 224463209 224463209 C T SCG2 Silent p.E264E 0.45 TCGA-ER-A2NC-06 2 232141433 232141433 C T ARMC9 Silent p.D473D 0.33 TCGA-ER-A2NC-06 2 233349193 233349193 G A ECEL1 Silent p.S391S 0.44 TCGA-ER-A2NC-06 2 238449122 238449122 G T MLPH Missense_Mutation p.K412N 0.50 tolerated(0.47) benign(0.09) TCGA-ER-A2NC-06 2 27439735 27439735 C T ATRAID Silent p.F258F 0.49 TCGA-ER-A2NC-06 2 28531251 28531251 C T BRE Intron 0.32 TCGA-ER-A2NC-06 2 29063268 29063268 G A SPDYA Silent p.Q261Q 0.46 TCGA-ER-A2NC-06 2 29063269 29063269 G A SPDYA Missense_Mutation p.D262N 0.46 tolerated(0.5) benign(0.001) TCGA-ER-A2NC-06 2 40366635 40366635 G A SLC8A1 Silent p.F817F 0.20 TCGA-ER-A2NC-06 2 47205993 47205993 C T TTC7A Silent p.T237T 0.33 TCGA-ER-A2NC-06 2 48807854 48807854 C T STON1-GTF2A1L Missense_Mutation p.P28S 0.26 tolerated(0.13) possibly_damaging(0.735) TCGA-ER-A2NC-06 2 49190127 49190127 C T FSHR Silent p.L611L 0.29 TCGA-ER-A2NC-06 2 66739376 66739376 C T MEIS1 Missense_Mutation p.P280S 0.48 deleterious(0.04) probably_damaging(0.942) TCGA-ER-A2NC-06 2 68882249 68882249 C T PROKR1 Silent p.F241F 0.42 TCGA-ER-A2NC-06 2 71160159 71160159 C T VAX2 Missense_Mutation p.S233F 0.26 tolerated(0.13) benign(0.001) TCGA-ER-A2NC-06 2 71891477 71891477 G A DYSF Missense_Mutation p.D1695N 0.32 deleterious(0) probably_damaging(0.965) TCGA-ER-A2NC-06 2 79384759 79384759 C T REG3A Nonsense_Mutation p.W133* 0.34 TCGA-ER-A2NC-06 2 85570343 85570343 C T RETSAT 3'UTR 0.19 TCGA-ER-A2NC-06 2 98377312 98377312 C T TMEM131 Missense_Mutation p.G1652D 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A2NC-06 2 98377313 98377313 C T TMEM131 Missense_Mutation p.G1652S 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A2NC-06 3 10353760 10353760 G A SEC13 Silent p.P113P 0.46 TCGA-ER-A2NC-06 3 108072514 108072514 G A HHLA2 Missense_Mutation p.G102E 0.30 tolerated(0.05) probably_damaging(1) TCGA-ER-A2NC-06 3 122274779 122274779 G A PARP9 Missense_Mutation p.T115I 0.38 tolerated(0.37) benign(0.004) TCGA-ER-A2NC-06 3 126730847 126730847 G T PLXNA1 Missense_Mutation p.G720V 0.38 deleterious(0) probably_damaging(0.985) TCGA-ER-A2NC-06 3 128696912 128696912 C T KIAA1257 Missense_Mutation p.E262K 0.26 tolerated(0.14) possibly_damaging(0.575) TCGA-ER-A2NC-06 3 151535223 151535223 G A AADAC Missense_Mutation p.E70K 0.32 tolerated(0.3) benign(0.003) TCGA-ER-A2NC-06 3 155241724 155241724 C T PLCH1 Missense_Mutation p.D466N 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 3 164733868 164733868 C T SI Missense_Mutation p.D1254N 0.27 deleterious(0) probably_damaging(0.991) TCGA-ER-A2NC-06 3 164755734 164755734 C T SI Missense_Mutation p.G794S 0.30 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NC-06 3 167254669 167254669 G A WDR49 Missense_Mutation p.T296I 0.35 tolerated(0.05) possibly_damaging(0.796) TCGA-ER-A2NC-06 3 168834197 168834197 G A MECOM Missense_Mutation p.S365F 0.35 tolerated(0.47) possibly_damaging(0.847) TCGA-ER-A2NC-06 3 183469919 183469919 C T YEATS2 Missense_Mutation p.S343F 0.35 deleterious(0.01) benign(0.044) TCGA-ER-A2NC-06 3 186915556 186915556 G A RTP1 Missense_Mutation p.E85K 0.30 deleterious(0.01) benign(0.418) TCGA-ER-A2NC-06 3 24164556 24164556 G A THRB Missense_Mutation p.A402V 0.34 deleterious(0) probably_damaging(0.987) TCGA-ER-A2NC-06 3 3081661 3081661 G A CNTN4 Intron 0.33 TCGA-ER-A2NC-06 3 36779026 36779026 G A DCLK3 Silent p.H375H 0.34 TCGA-ER-A2NC-06 3 38766694 38766694 C T SCN10A Missense_Mutation p.D1067N 0.37 tolerated(0.12) benign(0.003) TCGA-ER-A2NC-06 3 38781155 38781155 C T SCN10A Missense_Mutation p.E711K 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 3 3886905 3886905 G A LRRN1 Missense_Mutation p.E194K 0.33 deleterious(0) possibly_damaging(0.838) TCGA-ER-A2NC-06 3 38888937 38888937 G A SCN11A Missense_Mutation p.L1542F 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 3 39307076 39307076 C A CX3CR1 Missense_Mutation p.G341W 0.33 deleterious(0.03) possibly_damaging(0.698) TCGA-ER-A2NC-06 3 42732418 42732418 C T KLHL40 Missense_Mutation p.L559F 0.41 deleterious(0) probably_damaging(0.969) TCGA-ER-A2NC-06 3 44541585 44541585 G A ZNF852 Silent p.S228S 0.43 TCGA-ER-A2NC-06 3 44636455 44636455 C T ZNF660 Missense_Mutation p.S257F 0.32 tolerated(0.08) probably_damaging(0.959) TCGA-ER-A2NC-06 3 447335 447335 G A CHL1 Missense_Mutation p.E1206K 0.31 deleterious(0.02) probably_damaging(0.911) TCGA-ER-A2NC-06 3 46306885 46306885 C T CCR3 Missense_Mutation p.S100L 0.31 deleterious(0) probably_damaging(0.983) TCGA-ER-A2NC-06 3 47033334 47033334 C T NBEAL2 Silent p.A310A 0.38 TCGA-ER-A2NC-06 3 48956273 48956273 C T ARIH2OS Missense_Mutation p.E104K 0.59 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-ER-A2NC-06 3 52835087 52835087 G A ITIH3 Silent p.L436L 0.25 TCGA-ER-A2NC-06 3 52836407 52836407 G A ITIH3 Missense_Mutation p.E481K 0.28 tolerated(0.17) benign(0.002) TCGA-ER-A2NC-06 3 62498432 62498432 C T CADPS Missense_Mutation p.D865N 0.25 tolerated(0.22) benign(0.001) TCGA-ER-A2NC-06 3 64633651 64633651 G A ADAMTS9 Missense_Mutation p.P559S 0.28 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NC-06 3 69168818 69168818 C T LMOD3 Missense_Mutation p.V230I 0.46 tolerated(0.37) benign(0.034) TCGA-ER-A2NC-06 3 69928368 69928368 T A MITF Missense_Mutation p.L63H 0.44 deleterious(0) probably_damaging(0.998) TCGA-ER-A2NC-06 3 74334608 74334608 G A CNTN3 Missense_Mutation p.S851L 0.38 tolerated(0.15) benign(0.015) TCGA-ER-A2NC-06 3 89480404 89480404 C T EPHA3 Silent p.L747L 0.41 TCGA-ER-A2NC-06 4 10447873 10447873 G A ZNF518B Missense_Mutation p.P27L 0.35 tolerated(0.17) probably_damaging(0.997) TCGA-ER-A2NC-06 4 111398053 111398053 C T ENPEP Silent p.F161F 0.27 TCGA-ER-A2NC-06 4 141311862 141311862 C T CLGN Missense_Mutation p.E558K 0.31 tolerated(0.15) benign(0.107) TCGA-ER-A2NC-06 4 155156834 155156834 G A DCHS2 Silent p.F2535F 0.24 TCGA-ER-A2NC-06 4 183600827 183600827 C T TENM3 Silent p.F445F 0.38 TCGA-ER-A2NC-06 4 189012789 189012789 G A TRIML2 Missense_Mutation p.T301I 0.28 deleterious(0.04) probably_damaging(0.974) TCGA-ER-A2NC-06 4 20598061 20598061 C T SLIT2 Missense_Mutation p.P1115L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A2NC-06 4 25125709 25125709 G A SEPSECS Silent p.F450F 0.33 TCGA-ER-A2NC-06 4 367297 367297 T A ZNF141 Missense_Mutation p.H357Q 0.16 deleterious(0) probably_damaging(0.971) TCGA-ER-A2NC-06 4 367299 367299 A G ZNF141 Missense_Mutation p.K358R 0.16 tolerated(0.1) benign(0.01) TCGA-ER-A2NC-06 4 69512738 69512738 G C UGT2B15 3'UTR 0.37 TCGA-ER-A2NC-06 4 69795577 69795577 G A UGT2A3 Missense_Mutation p.S513F 0.27 tolerated(0.11) benign(0.029) TCGA-ER-A2NC-06 4 71275337 71275337 C T PROL1 Missense_Mutation p.L98F 0.35 tolerated_low_confidence(0.2) possibly_damaging(0.765) TCGA-ER-A2NC-06 4 75937680 75937680 C T PARM1 Missense_Mutation p.S30F 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-ER-A2NC-06 4 7705054 7705054 G A SORCS2 Silent p.V572V 0.41 TCGA-ER-A2NC-06 4 78081871 78081871 C G CCNG2 Intron 0.24 TCGA-ER-A2NC-06 4 79300951 79300951 G A FRAS1 Missense_Mutation p.D1122N 0.29 possibly_damaging(0.846) TCGA-ER-A2NC-06 4 81207665 81207665 C T FGF5 Silent p.L216L 0.30 TCGA-ER-A2NC-06 4 91229576 91229576 C T CCSER1 Silent p.S47S 0.32 TCGA-ER-A2NC-06 4 91229641 91229641 G C CCSER1 Missense_Mutation p.S69T 0.31 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NC-06 5 11117571 11117571 G A CTNND2 Silent p.I756I 0.35 TCGA-ER-A2NC-06 5 122343641 122343641 G A SNX24 3'UTR 0.27 TCGA-ER-A2NC-06 5 140181759 140181759 G A PCDHA3 Missense_Mutation p.G326E 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ER-A2NC-06 5 140241175 140241175 G A AC005609.1 3'UTR 0.36 TCGA-ER-A2NC-06 5 140249817 140249817 G C PCDHA11 Missense_Mutation p.D377H 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-ER-A2NC-06 5 1403074 1403074 G A SLC6A3 Missense_Mutation p.A577V 0.34 tolerated(0.62) benign(0.001) TCGA-ER-A2NC-06 5 140501978 140501978 C T PCDHB4 Missense_Mutation p.P133L 0.25 tolerated_low_confidence(1) benign(0.01) TCGA-ER-A2NC-06 5 140625713 140625713 G A PCDHB15 Silent p.R189R 0.35 TCGA-ER-A2NC-06 5 141041426 141041426 G A ARAP3 Intron 0.39 TCGA-ER-A2NC-06 5 149286902 149286902 G A PDE6A Silent p.L346L 0.35 TCGA-ER-A2NC-06 5 150647062 150647062 C T GM2A 3'UTR 0.52 TCGA-ER-A2NC-06 5 156907931 156907931 G A ADAM19 3'UTR 0.40 TCGA-ER-A2NC-06 5 176859722 176859722 C T GRK6 Missense_Mutation p.P119S 0.23 tolerated(0.3) benign(0.002) TCGA-ER-A2NC-06 5 176931356 176931356 G A DOK3 Silent p.P373P 0.36 TCGA-ER-A2NC-06 5 177580796 177580796 G A NHP2 Missense_Mutation p.P8L 0.29 tolerated(0.14) benign(0.018) TCGA-ER-A2NC-06 5 178413507 178413507 G A GRM6 Missense_Mutation p.S583F 0.22 deleterious(0) probably_damaging(0.982) TCGA-ER-A2NC-06 5 35965577 35965577 C T UGT3A1 Missense_Mutation p.D252N 0.34 deleterious(0.04) possibly_damaging(0.58) TCGA-ER-A2NC-06 5 38484964 38484964 C T LIFR Missense_Mutation p.G835E 0.25 deleterious(0) possibly_damaging(0.907) TCGA-ER-A2NC-06 5 68715972 68715972 C T MARVELD2 Missense_Mutation p.P254S 0.25 deleterious(0) probably_damaging(0.981) TCGA-ER-A2NC-06 5 79616732 79616732 G A SPZ1 Missense_Mutation p.R233K 0.36 tolerated(1) benign(0.14) TCGA-ER-A2NC-06 5 79734515 79734515 C T ZFYVE16 Missense_Mutation p.P671S 0.34 tolerated(0.31) benign(0.367) TCGA-ER-A2NC-06 5 79734516 79734516 C T ZFYVE16 Missense_Mutation p.P671L 0.34 tolerated(0.31) benign(0.03) TCGA-ER-A2NC-06 5 83360577 83360577 G A EDIL3 Silent p.P298P 0.32 TCGA-ER-A2NC-06 6 107102635 107102635 G A QRSL1 Missense_Mutation p.V294I 0.45 tolerated(0.45) benign(0.019) TCGA-ER-A2NC-06 6 10935409 10935409 C T SYCP2L Missense_Mutation p.A601V 0.38 tolerated(0.29) benign(0.016) TCGA-ER-A2NC-06 6 116757797 116757797 C T DSE Silent p.D722D 0.37 TCGA-ER-A2NC-06 6 116757798 116757798 C T DSE Missense_Mutation p.R723W 0.38 tolerated_low_confidence(0.13) benign(0.003) TCGA-ER-A2NC-06 6 119301317 119301317 C T FAM184A Missense_Mutation p.E763K 0.29 tolerated(0.15) benign(0.047) TCGA-ER-A2NC-06 6 130761744 130761744 C T TMEM200A Silent p.S59S 0.43 TCGA-ER-A2NC-06 6 130761981 130761981 C T TMEM200A Silent p.F138F 0.50 TCGA-ER-A2NC-06 6 132032151 132032151 C T CTAGE9 Missense_Mutation p.E3K 0.44 tolerated_low_confidence(0.31) possibly_damaging(0.557) TCGA-ER-A2NC-06 6 135250247 135250247 G A ALDH8A1 Missense_Mutation p.P319L 0.40 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NC-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-ER-A2NC-06 6 136599868 136599868 G A BCLAF1 Missense_Mutation p.R51C 0.17 deleterious_low_confidence(0) unknown(0) TCGA-ER-A2NC-06 6 138196929 138196929 T C TNFAIP3 Silent p.F197F 0.39 TCGA-ER-A2NC-06 6 165809885 165809885 G A PDE10A Missense_Mutation p.H448Y 0.45 tolerated(0.1) benign(0.213) TCGA-ER-A2NC-06 6 167719405 167719405 C T UNC93A Silent p.S281S 0.25 TCGA-ER-A2NC-06 6 26426568 26426568 G A BTN2A3P RNA 0.30 TCGA-ER-A2NC-06 6 28268586 28268586 C T PGBD1 Missense_Mutation p.P319S 0.32 tolerated_low_confidence(0.11) benign(0.002) TCGA-ER-A2NC-06 6 28501836 28501836 C T GPX5 Silent p.F186F 0.24 TCGA-ER-A2NC-06 6 28543044 28543044 G A SCAND3 Nonsense_Mutation p.R480* 0.52 TCGA-ER-A2NC-06 6 29079670 29079670 G A OR2J3 Translation_Start_Site p.M1? 0.50 deleterious_low_confidence(0.03) benign(0.216) TCGA-ER-A2NC-06 6 30858825 30858825 C T DDR1 Missense_Mutation p.R165C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 6 31594881 31594881 C T PRRC2A Missense_Mutation p.P399L 0.33 unknown(0) TCGA-ER-A2NC-06 6 32809404 32809404 G A PSMB8 Missense_Mutation p.R216W 0.30 deleterious(0.03) probably_damaging(0.975) TCGA-ER-A2NC-06 6 33690634 33690634 G A IP6K3 Missense_Mutation p.R366C 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 6 33690635 33690635 G A IP6K3 Silent p.I365I 0.31 TCGA-ER-A2NC-06 6 4057321 4057321 C T PRPF4B Missense_Mutation p.T878I 0.33 deleterious(0) unknown(0) TCGA-ER-A2NC-06 6 46107915 46107915 G A ENPP4 Missense_Mutation p.D199N 0.54 tolerated(0.57) benign(0.006) TCGA-ER-A2NC-06 6 56035873 56035873 C T COL21A1 Missense_Mutation p.D232N 0.25 deleterious(0) probably_damaging(0.987) TCGA-ER-A2NC-06 6 56500494 56500494 C T DST Missense_Mutation p.E490K 0.50 possibly_damaging(0.759) TCGA-ER-A2NC-06 6 70070960 70070960 T G BAI3 Silent p.L1265L 0.39 TCGA-ER-A2NC-06 6 71235823 71235823 C T FAM135A Silent p.I1012I 0.22 TCGA-ER-A2NC-06 6 7295626 7295626 G A SSR1 Silent p.I264I 0.44 TCGA-ER-A2NC-06 6 97052625 97052625 G A FHL5 Splice_Site p.X54_splice 0.48 TCGA-ER-A2NC-06 7 100369601 100369601 C T ZAN Nonsense_Mutation p.Q1795* 0.20 TCGA-ER-A2NC-06 7 100607746 100607746 G A MUC3A Silent p.R631R 0.18 TCGA-ER-A2NC-06 7 100679474 100679474 C T MUC17 Missense_Mutation p.L1593F 0.30 unknown(0) TCGA-ER-A2NC-06 7 133749336 133749336 C T EXOC4 3'UTR 0.39 TCGA-ER-A2NC-06 7 138545958 138545958 G A KIAA1549 Missense_Mutation p.S1725F 0.32 deleterious(0.01) probably_damaging(0.959) TCGA-ER-A2NC-06 7 140301627 140301627 G A DENND2A Missense_Mutation p.P191S 0.38 tolerated(0.53) benign(0.082) TCGA-ER-A2NC-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-ER-A2NC-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.35 deleterious(0) possibly_damaging(0.838) TCGA-ER-A2NC-06 7 141536273 141536273 G A PRSS37 Silent p.F210F 0.31 TCGA-ER-A2NC-06 7 142612720 142612720 C T TRPV5 Missense_Mutation p.E381K 0.21 tolerated(0.43) benign(0.002) TCGA-ER-A2NC-06 7 142638489 142638489 C T KEL Silent p.R683R 0.36 TCGA-ER-A2NC-06 7 150270114 150270114 C T GIMAP4 Missense_Mutation p.S319F 0.35 tolerated(0.74) benign(0.003) TCGA-ER-A2NC-06 7 2645531 2645531 C T IQCE Missense_Mutation p.P589S 0.40 tolerated(1) benign(0.041) TCGA-ER-A2NC-06 7 43663441 43663441 G C STK17A Missense_Mutation p.E292Q 0.18 tolerated(0.43) possibly_damaging(0.826) TCGA-ER-A2NC-06 7 72849830 72849830 C T FZD9 Missense_Mutation p.S498L 0.52 tolerated(0.61) possibly_damaging(0.752) TCGA-ER-A2NC-06 7 75877512 75877512 G A SRRM3 Silent p.S80S 0.39 TCGA-ER-A2NC-06 7 76825931 76825931 G A FGL2 Missense_Mutation p.R329C 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A2NC-06 7 82544898 82544898 C T PCLO Missense_Mutation p.G4135E 0.31 unknown(0) TCGA-ER-A2NC-06 7 82585613 82585613 C T PCLO Silent p.E1552E 0.38 TCGA-ER-A2NC-06 7 82764658 82764658 T C PCLO Silent p.K736K 0.27 TCGA-ER-A2NC-06 7 99445222 99445222 G A CYP3A43 Missense_Mutation p.E144K 0.29 deleterious(0.02) benign(0.025) TCGA-ER-A2NC-06 7 99821206 99821206 C T GATS 3'UTR 0.32 TCGA-ER-A2NC-06 8 110447565 110447565 G A PKHD1L1 Missense_Mutation p.D1163N 0.79 tolerated(0.23) benign(0.079) TCGA-ER-A2NC-06 8 110497275 110497275 G T PKHD1L1 Missense_Mutation p.E3193D 0.76 tolerated(0.44) benign(0.178) TCGA-ER-A2NC-06 8 116632016 116632016 G A TRPS1 Silent p.S103S 0.78 TCGA-ER-A2NC-06 8 139774709 139774709 C T COL22A1 Missense_Mutation p.G602R 0.74 unknown(0) TCGA-ER-A2NC-06 8 2815219 2815219 T C CSMD1 Missense_Mutation p.I3271M 0.60 possibly_damaging(0.575) TCGA-ER-A2NC-06 8 3855558 3855558 C T CSMD1 Missense_Mutation p.E229K 0.88 benign(0.093) TCGA-ER-A2NC-06 8 39468132 39468132 G A ADAM18 Missense_Mutation p.M143I 0.76 tolerated(1) benign(0.001) TCGA-ER-A2NC-06 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.93 TCGA-ER-A2NC-06 8 75227730 75227730 C A JPH1 Nonsense_Mutation p.E169* 0.69 TCGA-ER-A2NC-06 8 87755845 87755845 G A CNGB3 Missense_Mutation p.S4L 0.71 deleterious_low_confidence(0.01) benign(0.004) TCGA-ER-A2NC-06 8 94746582 94746582 G A RBM12B Missense_Mutation p.P686L 0.73 tolerated_low_confidence(0.16) benign(0.021) TCGA-ER-A2NC-06 8 95201422 95201422 A T CDH17 Missense_Mutation p.I48K 0.74 deleterious(0) possibly_damaging(0.866) TCGA-ER-A2NC-06 8 98831371 98831371 C T LAPTM4B Missense_Mutation p.P229S 0.78 tolerated(0.17) benign(0.194) TCGA-ER-A2NC-06 9 112899797 112899797 T C PALM2-AKAP2 Missense_Mutation p.L658S 0.37 tolerated(0.14) benign(0.259) TCGA-ER-A2NC-06 9 117164908 117164908 G A DFNB31 3'UTR 0.30 TCGA-ER-A2NC-06 9 117168831 117168831 G A DFNB31 Silent p.F680F 0.26 TCGA-ER-A2NC-06 9 126132428 126132428 C T CRB2 Missense_Mutation p.P366S 0.20 deleterious(0) possibly_damaging(0.876) TCGA-ER-A2NC-06 9 130489606 130489606 G A TTC16 Nonsense_Mutation p.W542* 0.25 TCGA-ER-A2NC-06 9 130984863 130984863 C T DNM1 Silent p.F372F 0.45 TCGA-ER-A2NC-06 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.38 tolerated_low_confidence(0.54) benign(0.005) TCGA-ER-A2NC-06 9 131198142 131198142 C T CERCAM Silent p.S582S 0.20 TCGA-ER-A2NC-06 9 131600339 131600339 G A CCBL1 Silent p.S143S 0.45 TCGA-ER-A2NC-06 9 134464268 134464268 G A RAPGEF1 Silent p.I823I 0.55 TCGA-ER-A2NC-06 9 135513636 135513636 G A DDX31 Intron 0.40 TCGA-ER-A2NC-06 9 136208593 136208593 G A MED22 Intron 0.54 TCGA-ER-A2NC-06 9 139945979 139945979 C T ENTPD2 Silent p.A123A 0.19 TCGA-ER-A2NC-06 9 19346438 19346438 C T DENND4C Missense_Mutation p.S1175F 0.28 deleterious(0.03) benign(0.418) TCGA-ER-A2NC-06 9 33797909 33797909 C T PRSS3 Missense_Mutation p.R152C 0.60 deleterious(0.05) benign(0.092) TCGA-ER-A2NC-06 9 35685757 35685757 G A TPM2 Silent p.S87S 0.62 TCGA-ER-A2NC-06 9 8341825 8341825 G A PTPRD Silent p.I1605I 0.43 TCGA-ER-A2NC-06 9 90501864 90501864 C T SPATA31E1 Missense_Mutation p.S821F 0.38 deleterious(0.03) possibly_damaging(0.614) TCGA-ER-A2NC-06 9 90501865 90501865 C T SPATA31E1 Silent p.S821S 0.34 TCGA-ER-A2NC-06 9 90534220 90534220 G A SPATA31C1 RNA 0.21 TCGA-ER-A2NC-06 9 91978956 91978956 C T SECISBP2 3'Flank 0.44 TCGA-ER-A2NC-06 9 91978957 91978957 C T SECISBP2 3'Flank 0.42 TCGA-ER-A2NC-06 9 93375576 93375576 G A DIRAS2 Silent p.I178I 0.52 TCGA-ER-A2NC-06 X 100349606 100349606 G A TMEM35 Silent p.K55K 0.79 TCGA-ER-A2NC-06 X 105450652 105450652 G A MUM1L1 Silent p.V409V 0.64 TCGA-ER-A2NC-06 X 105451179 105451179 C T MUM1L1 Missense_Mutation p.S585L 0.71 deleterious(0) possibly_damaging(0.521) TCGA-ER-A2NC-06 X 107863576 107863576 G T COL4A5 Missense_Mutation p.G866V 0.71 unknown(0) TCGA-ER-A2NC-06 X 110439090 110439090 C T PAK3 Silent p.F413F 0.62 TCGA-ER-A2NC-06 X 114953385 114953385 C T RP1-241P17.4 Silent p.V55V 0.80 TCGA-ER-A2NC-06 X 118222545 118222545 C T KIAA1210 Missense_Mutation p.G883E 0.64 tolerated(0.66) benign(0.004) TCGA-ER-A2NC-06 X 130410986 130410986 C T IGSF1 Silent p.G850G 0.73 TCGA-ER-A2NC-06 X 132161249 132161249 G A USP26 Missense_Mutation p.P334S 0.71 tolerated(0.15) possibly_damaging(0.817) TCGA-ER-A2NC-06 X 135092682 135092682 C T SLC9A6 Silent p.F327F 0.68 TCGA-ER-A2NC-06 X 152128322 152128322 G A ZNF185 Missense_Mutation p.G528S 0.56 tolerated(0.35) benign(0.098) TCGA-ER-A2NC-06 X 27999147 27999147 T C DCAF8L1 Missense_Mutation p.E102G 0.69 tolerated(0.17) benign(0.001) TCGA-ER-A2NC-06 X 27999149 27999149 C T DCAF8L1 Silent p.E101E 0.69 TCGA-ER-A2NC-06 X 30254464 30254464 C T MAGEB3 Silent p.V141V 0.72 TCGA-ER-A2NC-06 X 50051948 50051948 C T CCNB3 Missense_Mutation p.S260F 0.64 tolerated(0.05) benign(0.006) TCGA-ER-A2NC-06 X 50345803 50345803 G A SHROOM4 Nonsense_Mutation p.Q1258* 0.72 TCGA-ER-A2NC-06 X 83129493 83129493 G A CYLC1 Missense_Mutation p.E593K 0.93 tolerated(1) benign(0.093) TCGA-ER-A2ND-06 10 101293025 101293025 T G NKX2-3 Missense_Mutation p.M46R 0.18 deleterious(0) benign(0.014) TCGA-ER-A2ND-06 10 125521537 125521537 G T CPXM2 Missense_Mutation p.P543H 0.39 deleterious(0) probably_damaging(0.968) TCGA-ER-A2ND-06 10 129911718 129911718 A G MKI67 Silent p.T543T 0.28 TCGA-ER-A2ND-06 10 95095700 95095700 G C MYOF Missense_Mutation p.P1514R 0.05 deleterious(0) probably_damaging(1) TCGA-ER-A2ND-06 10 97393334 97393334 G A ALDH18A1 Missense_Mutation p.L211F 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A2ND-06 11 1080564 1080564 C T MUC2 Silent p.F402F 0.78 TCGA-ER-A2ND-06 11 117866368 117866368 C T IL10RA Silent p.A251A 0.71 TCGA-ER-A2ND-06 11 118769345 118769345 G A BCL9L Missense_Mutation p.L1427F 0.65 probably_damaging(0.994) TCGA-ER-A2ND-06 11 45991416 45991416 G T PHF21A Missense_Mutation p.Q217K 0.25 deleterious(0) probably_damaging(0.983) TCGA-ER-A2ND-06 11 64112234 64112234 G A CCDC88B Missense_Mutation p.A741T 0.48 tolerated(0.13) benign(0.01) TCGA-ER-A2ND-06 11 94731152 94731152 C T KDM4D Missense_Mutation p.L206F 0.75 tolerated(1) benign(0.001) TCGA-ER-A2ND-06 12 104390557 104390557 C T GLT8D2 Missense_Mutation p.D186N 0.68 tolerated(0.09) benign(0.382) TCGA-ER-A2ND-06 12 112182552 112182552 A T ACAD10 Missense_Mutation p.E638V 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A2ND-06 12 15035126 15035126 C T MGP Missense_Mutation p.G112R 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A2ND-06 12 57424845 57424845 C T MYO1A Silent p.Q821Q 0.42 TCGA-ER-A2ND-06 13 25670378 25670378 C T PABPC3 Silent p.Y14Y 0.26 TCGA-ER-A2ND-06 13 43360951 43360951 A G FAM216B Missense_Mutation p.N51S 0.25 tolerated(0.35) benign(0.016) TCGA-ER-A2ND-06 14 20404268 20404268 C T OR4K1 Missense_Mutation p.S148F 0.13 deleterious(0) probably_damaging(0.962) TCGA-ER-A2ND-06 14 20443798 20443798 C T OR4K15 Silent p.L41L 0.41 TCGA-ER-A2ND-06 14 20528800 20528800 C T OR4L1 Silent p.V199V 0.38 TCGA-ER-A2ND-06 14 21993455 21993455 C A SALL2 Missense_Mutation p.G136V 0.38 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-ER-A2ND-06 14 23609687 23609687 G A SLC7A8 Missense_Mutation p.P261S 0.34 deleterious(0) probably_damaging(0.993) TCGA-ER-A2ND-06 14 61180388 61180388 G A SIX4 Nonsense_Mutation p.Q695* 0.41 TCGA-ER-A2ND-06 14 79111526 79111526 A G NRXN3 5'UTR 0.31 TCGA-ER-A2ND-06 15 31341578 31341578 T A TRPM1 Silent p.T541T 0.30 TCGA-ER-A2ND-06 15 51350174 51350174 G A TNFAIP8L3 Silent p.F261F 0.49 TCGA-ER-A2ND-06 15 85382960 85382971 CCAGGCCTCTGC - ALPK3 In_Frame_Del p.A354_Q357del 0.23 TCGA-ER-A2ND-06 16 10626808 10626808 G A EMP2 Missense_Mutation p.T153I 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A2ND-06 16 1392990 1392990 A G BAIAP3 Missense_Mutation p.N448S 0.35 deleterious(0.02) probably_damaging(0.928) TCGA-ER-A2ND-06 16 28617511 28617511 G A SULT1A1 Missense_Mutation p.S214F 0.54 deleterious(0) possibly_damaging(0.883) TCGA-ER-A2ND-06 16 28857367 28857367 G A TUFM Missense_Mutation p.A38V 0.23 tolerated(0.28) benign(0.005) TCGA-ER-A2ND-06 16 30680186 30680186 C T FBRS Missense_Mutation p.P751L 0.44 probably_damaging(0.998) TCGA-ER-A2ND-06 17 10212567 10212567 T G MYH13 Missense_Mutation p.Q1718P 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A2ND-06 17 10307679 10307679 C T MYH8 Missense_Mutation p.E886K 0.60 deleterious(0.01) benign(0.048) TCGA-ER-A2ND-06 17 39925418 39925418 C T JUP Silent p.S170S 0.90 TCGA-ER-A2ND-06 17 6722611 6722611 T A TEKT1 Missense_Mutation p.N86I 0.14 tolerated(0.45) benign(0.148) TCGA-ER-A2ND-06 17 74011093 74011093 T C EVPL Missense_Mutation p.N709S 0.74 tolerated(0.18) benign(0.01) TCGA-ER-A2ND-06 17 7918671 7918671 T G GUCY2D Missense_Mutation p.M932R 0.47 deleterious(0.02) probably_damaging(0.98) TCGA-ER-A2ND-06 17 8215734 8215734 C A ARHGEF15 Nonsense_Mutation p.S126* 0.10 TCGA-ER-A2ND-06 18 30847243 30847243 C T CCDC178 Missense_Mutation p.V399I 0.23 tolerated(0.49) benign(0.009) TCGA-ER-A2ND-06 18 32887691 32887691 G A ZNF271 RNA 0.16 TCGA-ER-A2ND-06 19 10747072 10747072 C T SLC44A2 Missense_Mutation p.S436L 0.22 deleterious(0.01) benign(0.028) TCGA-ER-A2ND-06 19 19121075 19121075 T C SUGP2 Missense_Mutation p.N643D 0.18 tolerated(0.28) benign(0.017) TCGA-ER-A2ND-06 19 22785490 22785490 G A AC011467.1 5'Flank 0.38 TCGA-ER-A2ND-06 19 31038958 31038958 C T ZNF536 Missense_Mutation p.P811L 0.67 deleterious(0) benign(0.098) TCGA-ER-A2ND-06 19 41454981 41454981 G A AC092071.1 3'Flank 0.12 TCGA-ER-A2ND-06 19 43372258 43372258 A G PSG1 Missense_Mutation p.V413A 0.22 deleterious(0) probably_damaging(0.996) TCGA-ER-A2ND-06 19 52000671 52000671 C T SIGLEC12 Silent p.T478T 0.39 TCGA-ER-A2ND-06 19 54545555 54545555 T G VSTM1 Missense_Mutation p.I155L 0.44 tolerated(1) benign(0) TCGA-ER-A2ND-06 19 56363606 56363606 G A NLRP4 Missense_Mutation p.E54K 0.41 tolerated(0.06) possibly_damaging(0.628) TCGA-ER-A2ND-06 19 58718389 58718389 A G ZNF274 Missense_Mutation p.H186R 0.23 tolerated(0.68) benign(0.001) TCGA-ER-A2ND-06 1 109745567 109745567 G A KIAA1324 Missense_Mutation p.R992K 0.42 tolerated(0.26) benign(0.011) TCGA-ER-A2ND-06 1 13940906 13940906 C T PDPN Missense_Mutation p.S237L 0.59 deleterious(0.02) probably_damaging(0.992) TCGA-ER-A2ND-06 1 151396447 151396447 T G POGZ Missense_Mutation p.K501Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-ER-A2ND-06 1 153410686 153410686 G A S100A7L2 Silent p.F51F 0.35 TCGA-ER-A2ND-06 1 157069119 157069119 C T ETV3L Missense_Mutation p.R37Q 0.36 deleterious(0) probably_damaging(0.961) TCGA-ER-A2ND-06 1 157650538 157650538 C T FCRL3 Silent p.P660P 0.34 TCGA-ER-A2ND-06 1 158449791 158449791 G A OR10R2 Missense_Mutation p.E42K 0.38 tolerated(0.13) benign(0.023) TCGA-ER-A2ND-06 1 161044509 161044509 C T PVRL4 Missense_Mutation p.D298N 0.43 tolerated(0.62) benign(0.003) TCGA-ER-A2ND-06 1 173702979 173702979 C T KLHL20 Missense_Mutation p.P51S 0.14 tolerated(0.46) benign(0.026) TCGA-ER-A2ND-06 1 184772734 184772734 C T FAM129A Silent p.A513A 0.36 TCGA-ER-A2ND-06 1 201022629 201022629 T G CACNA1S Missense_Mutation p.E1251D 0.21 deleterious(0.03) probably_damaging(0.98) TCGA-ER-A2ND-06 1 201184809 201184809 G A IGFN1 Silent p.V3046V 0.35 TCGA-ER-A2ND-06 1 230979330 230979330 G A C1orf198 Missense_Mutation p.P233S 0.16 tolerated(0.74) benign(0.406) TCGA-ER-A2ND-06 1 248129469 248129469 C G OR2AK2 Missense_Mutation p.S279C 0.22 deleterious(0) probably_damaging(0.981) TCGA-ER-A2ND-06 1 40126862 40126862 G A NT5C1A Silent p.F210F 0.80 TCGA-ER-A2ND-06 1 44466702 44466702 A T SLC6A9 Missense_Mutation p.M527K 0.32 deleterious(0) probably_damaging(0.95) TCGA-ER-A2ND-06 1 8420555 8420555 G A RERE Silent p.P1004P 0.75 TCGA-ER-A2ND-06 1 8420556 8420556 G A RERE Missense_Mutation p.P1004L 0.77 unknown(0) TCGA-ER-A2ND-06 1 97981340 97981340 C T DPYD Missense_Mutation p.R561Q 0.70 tolerated(0.12) possibly_damaging(0.753) TCGA-ER-A2ND-06 20 33345550 33345550 G A NCOA6 Missense_Mutation p.S334F 0.47 benign(0.352) TCGA-ER-A2ND-06 20 33449261 33449261 G A GGT7 Missense_Mutation p.S221F 0.33 tolerated(0.12) benign(0.004) TCGA-ER-A2ND-06 20 42574536 42574536 C T TOX2 Intron 0.35 TCGA-ER-A2ND-06 20 58514314 58514314 C T PPP1R3D Missense_Mutation p.G225R 0.19 tolerated(0.1) benign(0.174) TCGA-ER-A2ND-06 20 62329955 62329955 C A TNFRSF6B 3'UTR 0.10 TCGA-ER-A2ND-06 21 41505858 41505858 C T DSCAM Missense_Mutation p.S1162N 0.31 deleterious(0) possibly_damaging(0.628) TCGA-ER-A2ND-06 21 45671560 45671560 C T DNMT3L Missense_Mutation p.D239N 0.47 deleterious(0.03) possibly_damaging(0.756) TCGA-ER-A2ND-06 21 45802618 45802618 G A TRPM2 Silent p.R411R 0.42 TCGA-ER-A2ND-06 22 39884939 39884939 C T MGAT3 Silent p.D529D 0.32 TCGA-ER-A2ND-06 2 110922252 110922252 A T NPHP1 Missense_Mutation p.C262S 0.27 tolerated(0.47) benign(0.004) TCGA-ER-A2ND-06 2 131103834 131103834 C T IMP4 Silent p.R250R 0.28 TCGA-ER-A2ND-06 2 141243054 141243054 C T LRP1B Missense_Mutation p.D3095N 0.77 possibly_damaging(0.831) TCGA-ER-A2ND-06 2 164468318 164468318 T C FIGN Splice_Site p.X9_splice 0.06 TCGA-ER-A2ND-06 2 179464170 179464170 G A TTN Missense_Mutation p.R18784C 0.73 TCGA-ER-A2ND-06 2 215279277 215279277 G A VWC2L Silent p.G120G 0.77 TCGA-ER-A2ND-06 2 219894796 219894796 A G CCDC108 Silent p.T432T 0.36 TCGA-ER-A2ND-06 2 233272555 233272555 G T ALPPL2 Missense_Mutation p.G159V 0.84 deleterious(0) probably_damaging(0.999) TCGA-ER-A2ND-06 2 233321670 233321670 G A ALPI Missense_Mutation p.G121E 0.65 deleterious(0) probably_damaging(1) TCGA-ER-A2ND-06 2 234750609 234750609 G A HJURP Missense_Mutation p.R273W 0.73 deleterious(0) possibly_damaging(0.684) TCGA-ER-A2ND-06 2 26725240 26725240 C T OTOF Missense_Mutation p.G213E 0.51 tolerated(0.31) benign(0.194) TCGA-ER-A2ND-06 2 28627176 28627176 T G FOSL2 Missense_Mutation p.V102G 0.21 tolerated(0.29) probably_damaging(0.941) TCGA-ER-A2ND-06 2 95713853 95713853 G A MAL Silent p.E81E 0.39 TCGA-ER-A2ND-06 3 108672598 108672598 G T GUCA1C Silent p.G4G 0.33 TCGA-ER-A2ND-06 3 121305296 121305296 C T ARGFX Missense_Mutation p.S266F 0.39 tolerated(0.1) possibly_damaging(0.652) TCGA-ER-A2ND-06 3 126733579 126733579 A C PLXNA1 Missense_Mutation p.S928R 0.15 tolerated(0.52) benign(0.044) TCGA-ER-A2ND-06 3 137743456 137743456 T C CLDN18 Silent p.C131C 0.17 TCGA-ER-A2ND-06 3 173998380 173998380 C T NLGN1 Missense_Mutation p.H587Y 0.42 tolerated(0.21) probably_damaging(0.982) TCGA-ER-A2ND-06 3 40567327 40567327 C T ZNF621 5'UTR 0.16 TCGA-ER-A2ND-06 3 9831606 9831606 G A TADA3 Silent p.F83F 0.68 TCGA-ER-A2ND-06 4 53463767 53463767 A G USP46 3'UTR 0.60 TCGA-ER-A2ND-06 4 77324407 77324407 T C CCDC158 5'UTR 0.27 TCGA-ER-A2ND-06 5 140801461 140801461 C T PCDHGA11 Nonsense_Mutation p.R223* 0.64 TCGA-ER-A2ND-06 5 141051859 141051859 G T ARAP3 Silent p.A465A 0.35 TCGA-ER-A2ND-06 5 149206305 149206305 G A PPARGC1B Missense_Mutation p.V108M 0.48 tolerated(0.47) benign(0.187) TCGA-ER-A2ND-06 5 160721028 160721028 C T GABRB2 3'UTR 0.36 TCGA-ER-A2ND-06 5 31799634 31799634 C T PDZD2 Silent p.F93F 0.72 TCGA-ER-A2ND-06 5 89939773 89939773 G A GPR98 Missense_Mutation p.E903K 0.75 possibly_damaging(0.636) TCGA-ER-A2ND-06 6 111695074 111695074 G A REV3L Missense_Mutation p.S1495L 0.22 deleterious_low_confidence(0.02) benign(0.206) TCGA-ER-A2ND-06 6 125112530 125112530 G A NKAIN2 Missense_Mutation p.E174K 0.22 deleterious(0.02) possibly_damaging(0.767) TCGA-ER-A2ND-06 6 160501173 160501173 G A IGF2R Missense_Mutation p.G1900D 0.24 deleterious(0.05) probably_damaging(0.976) TCGA-ER-A2ND-06 6 26414007 26414007 G A BTN3A1 3'UTR 0.20 TCGA-ER-A2ND-06 6 27101283 27101283 T C HIST1H2AG 3'UTR 0.24 TCGA-ER-A2ND-06 6 29141738 29141738 G A OR2J2 Missense_Mutation p.G109E 0.48 deleterious(0) probably_damaging(0.991) TCGA-ER-A2ND-06 6 41712139 41712139 G A PGC Silent p.A108A 0.50 TCGA-ER-A2ND-06 6 54212203 54212203 C T TINAG Nonsense_Mutation p.R263* 0.44 TCGA-ER-A2ND-06 6 74320250 74320250 A G SLC17A5 Missense_Mutation p.F378L 0.25 tolerated(0.08) benign(0.381) TCGA-ER-A2ND-06 6 76023848 76023848 T C FILIP1 Missense_Mutation p.N567S 0.31 tolerated(1) benign(0) TCGA-ER-A2ND-06 6 90468045 90468045 G A MDN1 Silent p.F877F 0.55 TCGA-ER-A2ND-06 7 100086290 100086290 A G NYAP1 Missense_Mutation p.T316A 0.17 tolerated(0.42) benign(0.028) TCGA-ER-A2ND-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-ER-A2ND-06 7 142880577 142880577 C T TAS2R39 Silent p.C22C 0.21 TCGA-ER-A2ND-06 7 150417709 150417709 G A GIMAP1 Missense_Mutation p.G206E 0.45 tolerated(1) benign(0.188) TCGA-ER-A2ND-06 7 154684285 154684285 C T DPP6 3'UTR 0.13 TCGA-ER-A2ND-06 7 20449354 20449354 A G ITGB8 Missense_Mutation p.N714D 0.39 tolerated(0.22) benign(0.075) TCGA-ER-A2ND-06 7 27186892 27186892 C T HOXA6 Intron 0.35 TCGA-ER-A2ND-06 7 30094403 30094403 A G PLEKHA8 Missense_Mutation p.D292G 0.23 tolerated(0.1) benign(0) TCGA-ER-A2ND-06 7 72420461 72420461 C T POM121 3'UTR 0.17 TCGA-ER-A2ND-06 8 101717163 101717163 G A PABPC1 Silent p.L603L 0.36 TCGA-ER-A2ND-06 8 144332709 144332709 C T ZFP41 3'UTR 0.25 TCGA-ER-A2ND-06 8 145999097 145999097 G A ZNF34 Missense_Mutation p.H413Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-ER-A2ND-06 8 17447069 17447069 C T PDGFRL Missense_Mutation p.P50S 0.77 deleterious(0.05) benign(0.043) TCGA-ER-A2ND-06 8 69434077 69434077 T C C8orf34 Missense_Mutation p.I270T 0.48 deleterious(0) probably_damaging(0.982) TCGA-ER-A2ND-06 9 117848377 117848377 C T TNC Missense_Mutation p.G545R 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A2ND-06 9 127762264 127762264 A G SCAI Missense_Mutation p.Y407H 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A2ND-06 9 14824925 14824925 C T FREM1 Silent p.R649R 0.54 TCGA-ER-A2ND-06 9 23692762 23692762 G A ELAVL2 Silent p.I291I 0.76 TCGA-ER-A2ND-06 9 33246632 33246632 G A SPINK4 Missense_Mutation p.V41I 0.39 deleterious(0.03) benign(0.091) TCGA-ER-A2ND-06 9 37357180 37357180 G A ZCCHC7 Missense_Mutation p.G516D 0.04 tolerated(0.43) benign(0.114) TCGA-ER-A2ND-06 9 77370293 77370293 T C TRPM6 Missense_Mutation p.T1628A 0.19 tolerated_low_confidence(0.14) benign(0.008) TCGA-ER-A2ND-06 9 95608487 95608487 G A ZNF484 3'UTR 0.31 TCGA-ER-A2ND-06 X 118146947 118146947 A C LONRF3 Intron 0.27 TCGA-ER-A2ND-06 X 140994526 140994526 C T MAGEC1 Missense_Mutation p.P446S 0.50 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-ER-A2ND-06 X 49958737 49958737 A C AKAP4 Missense_Mutation p.D209E 0.73 tolerated(0.28) benign(0.015) TCGA-ER-A2ND-06 X 54959787 54959787 A G PFKFB1 3'UTR 0.18 TCGA-ER-A2ND-06 X 69503875 69503875 C A RAB41 Silent p.T176T 0.27 TCGA-ER-A2ND-06 X 70836204 70836204 G A CXCR3 3'UTR 0.31 TCGA-ER-A2NE-06 10 104120095 104120095 C T GBF1 Silent p.A444A 0.84 TCGA-ER-A2NE-06 10 61011251 61011251 C T FAM13C Intron 0.90 TCGA-ER-A2NE-06 10 74653549 74653549 C T OIT3 5'UTR 0.71 TCGA-ER-A2NE-06 10 89711916 89711916 T A PTEN Nonsense_Mutation p.Y178* 0.10 TCGA-ER-A2NE-06 10 96827209 96827209 G A CYP2C8 Intron 0.97 TCGA-ER-A2NE-06 10 97366426 97366426 A C ALDH18A1 3'UTR 0.89 TCGA-ER-A2NE-06 11 124745065 124745065 C T ROBO3 Missense_Mutation p.P711L 0.86 tolerated(0.25) benign(0.02) TCGA-ER-A2NE-06 11 4904098 4904098 G A OR51T1 Silent p.R350R 0.35 TCGA-ER-A2NE-06 11 5021013 5021013 G A OR51L1 Silent p.G267G 0.25 TCGA-ER-A2NE-06 11 51411646 51411646 G A OR4A5 Silent p.P250P 0.35 TCGA-ER-A2NE-06 11 55419000 55419000 G A OR4S2 Silent p.G207G 0.86 TCGA-ER-A2NE-06 11 65268180 65268180 A - MALAT1 RNA 0.39 TCGA-ER-A2NE-06 11 6648741 6648741 C T DCHS1 Silent p.V1843V 0.42 TCGA-ER-A2NE-06 11 89069079 89069079 G A NOX4 Missense_Mutation p.S517L 0.87 deleterious(0.02) benign(0.185) TCGA-ER-A2NE-06 12 13220169 13220169 G A KIAA1467 Missense_Mutation p.E361K 0.39 tolerated(0.7) benign(0.011) TCGA-ER-A2NE-06 12 14994061 14994061 G A ART4 Silent p.F57F 0.34 TCGA-ER-A2NE-06 12 4430444 4430444 C T C12orf5 Missense_Mutation p.R3C 0.56 deleterious(0.01) possibly_damaging(0.776) TCGA-ER-A2NE-06 12 49435296 49435296 T C KMT2D Missense_Mutation p.K2086R 0.25 benign(0.115) TCGA-ER-A2NE-06 12 662562 662562 C T B4GALNT3 Silent p.S491S 0.40 TCGA-ER-A2NE-06 12 97137677 97137677 C T C12orf55 Silent p.L2516L 0.77 TCGA-ER-A2NE-06 13 24895678 24895678 C T C1QTNF9 Silent p.F258F 0.64 TCGA-ER-A2NE-06 13 25453355 25453355 T C RNF17 Missense_Mutation p.Y1602H 0.10 deleterious(0) probably_damaging(0.969) TCGA-ER-A2NE-06 13 38266172 38266172 T C TRPC4 Missense_Mutation p.T400A 0.51 deleterious(0.02) possibly_damaging(0.805) TCGA-ER-A2NE-06 13 80125153 80125153 C T NDFIP2 Silent p.G303G 0.37 TCGA-ER-A2NE-06 14 20295728 20295728 G A OR4N2 Missense_Mutation p.G41R 0.30 deleterious(0.01) benign(0.12) TCGA-ER-A2NE-06 14 20345295 20345295 G T OR4K2 Missense_Mutation p.R290M 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NE-06 14 23891495 23891495 C T MYH7 Missense_Mutation p.D1047N 0.32 tolerated(0.1) probably_damaging(0.979) TCGA-ER-A2NE-06 14 33015958 33015958 C T AKAP6 Missense_Mutation p.S700L 0.45 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NE-06 14 79181157 79181157 C T NRXN3 Silent p.I200I 0.48 TCGA-ER-A2NE-06 14 86089781 86089781 C T FLRT2 Silent p.I641I 0.42 TCGA-ER-A2NE-06 14 95111300 95111300 C T SERPINA13P RNA 0.78 TCGA-ER-A2NE-06 15 26866484 26866485 - TC GABRB3 Frame_Shift_Ins p.D146Efs*18 0.24 TCGA-ER-A2NE-06 15 31851373 31851373 C T OTUD7A Missense_Mutation p.G117R 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 15 41165519 41165519 C T RHOV Missense_Mutation p.D150N 0.56 tolerated(0.09) benign(0.198) TCGA-ER-A2NE-06 15 66610870 66610870 A - DIS3L Frame_Shift_Del p.N361Mfs*54 0.33 TCGA-ER-A2NE-06 15 72582465 72582465 C T CELF6 Intron 0.33 TCGA-ER-A2NE-06 15 72972411 72972411 C T HIGD2B 5'UTR 0.33 TCGA-ER-A2NE-06 15 81271781 81271781 G A MESDC2 Missense_Mutation p.R162C 0.37 tolerated(0.06) probably_damaging(0.994) TCGA-ER-A2NE-06 15 89449881 89449881 G A MFGE8 Silent p.I172I 0.45 TCGA-ER-A2NE-06 15 92977491 92977491 T G ST8SIA2 Missense_Mutation p.I59R 0.05 benign(0.002) TCGA-ER-A2NE-06 16 12758963 12758963 A G CPPED1 Missense_Mutation p.V242A 0.27 tolerated(1) benign(0.001) TCGA-ER-A2NE-06 16 16205272 16205272 G A ABCC1 Missense_Mutation p.G971E 0.42 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NE-06 16 20329728 20329728 C T GP2 Silent p.G347G 0.48 TCGA-ER-A2NE-06 16 33965518 33965518 G A RNA5-8SP2 RNA 0.39 TCGA-ER-A2NE-06 16 55857517 55857517 C T CES1 Missense_Mutation p.E162K 0.19 deleterious(0.02) possibly_damaging(0.9) TCGA-ER-A2NE-06 16 69294068 69294068 C T SNTB2 Missense_Mutation p.P304S 0.40 tolerated(0.1) benign(0.351) TCGA-ER-A2NE-06 16 72173222 72173222 G A PMFBP1 Missense_Mutation p.P295L 0.44 deleterious(0.02) probably_damaging(0.934) TCGA-ER-A2NE-06 16 89260307 89260307 G A CDH15 Missense_Mutation p.D713N 0.38 deleterious(0.03) benign(0.127) TCGA-ER-A2NE-06 16 89357183 89357183 G A ANKRD11 Missense_Mutation p.P151S 0.46 probably_damaging(0.992) TCGA-ER-A2NE-06 16 89704651 89704651 C T DPEP1 3'UTR 0.74 TCGA-ER-A2NE-06 17 16665012 16665012 G A CCDC144A Missense_Mutation p.E1216K 0.67 deleterious(0.05) possibly_damaging(0.698) TCGA-ER-A2NE-06 17 71348681 71348681 C T SDK2 Missense_Mutation p.D1897N 0.74 tolerated(0.18) probably_damaging(1) TCGA-ER-A2NE-06 18 21140301 21140301 G A NPC1 Missense_Mutation p.P259S 0.36 deleterious(0.02) benign(0.285) TCGA-ER-A2NE-06 18 28714632 28714632 C T DSC1 Silent p.L593L 0.42 TCGA-ER-A2NE-06 19 14779619 14779619 G A EMR3 Missense_Mutation p.T24I 0.30 tolerated(0.18) benign(0.386) TCGA-ER-A2NE-06 19 16178414 16178414 C T TPM4 5'UTR 0.41 TCGA-ER-A2NE-06 19 19427294 19427294 G A SUGP1 Missense_Mutation p.A48V 0.41 deleterious(0.01) probably_damaging(0.972) TCGA-ER-A2NE-06 19 21300550 21300550 G A ZNF714 Missense_Mutation p.M360I 0.47 tolerated(0.52) benign(0.001) TCGA-ER-A2NE-06 19 21300565 21300565 G A ZNF714 Silent p.E365E 0.45 TCGA-ER-A2NE-06 19 21300715 21300715 G C ZNF714 Missense_Mutation p.K415N 0.58 deleterious(0.04) possibly_damaging(0.503) TCGA-ER-A2NE-06 19 22939400 22939400 G A ZNF99 3'Flank 0.47 TCGA-ER-A2NE-06 19 42930801 42930801 C T LIPE Silent p.R167R 0.44 TCGA-ER-A2NE-06 19 4817600 4817600 G A TICAM1 Missense_Mutation p.P264S 0.29 tolerated(0.38) benign(0.01) TCGA-ER-A2NE-06 19 50099736 50099736 C T PRR12 Missense_Mutation p.T715I 0.61 possibly_damaging(0.702) TCGA-ER-A2NE-06 19 50099739 50099739 C - PRR12 Frame_Shift_Del p.A716Gfs*10 0.61 TCGA-ER-A2NE-06 19 55451265 55451265 C T NLRP7 Missense_Mutation p.D308N 0.57 deleterious(0.01) benign(0.374) TCGA-ER-A2NE-06 19 56313004 56313004 G A NLRP11 Missense_Mutation p.S702F 0.37 deleterious(0) probably_damaging(0.98) TCGA-ER-A2NE-06 19 58773811 58773811 C T ZNF544 Silent p.F613F 0.45 TCGA-ER-A2NE-06 19 9089213 9089213 C T MUC16 Missense_Mutation p.E868K 0.42 unknown(0) TCGA-ER-A2NE-06 1 111494240 111494240 G A LRIF1 Silent p.S422S 0.48 TCGA-ER-A2NE-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.42 deleterious(0.01) benign(0.045) TCGA-ER-A2NE-06 1 12091449 12091449 C T MIIP Missense_Mutation p.P357S 0.90 tolerated(0.45) benign(0) TCGA-ER-A2NE-06 1 156386582 156386582 A T C1orf61 Missense_Mutation p.L17H 0.41 tolerated_low_confidence(0.05) probably_damaging(0.938) TCGA-ER-A2NE-06 1 156873748 156873748 C T PEAR1 Silent p.L10L 0.41 TCGA-ER-A2NE-06 1 157660321 157660321 G A FCRL3 Missense_Mutation p.P472S 0.46 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 1 159804974 159804974 G A SLAMF8 Missense_Mutation p.G261E 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 1 165513978 165513978 A C LRRC52 Missense_Mutation p.T149P 0.46 tolerated(0.08) benign(0.055) TCGA-ER-A2NE-06 1 167874300 167874300 C T ADCY10 Missense_Mutation p.G27R 0.40 tolerated(0.38) probably_damaging(0.964) TCGA-ER-A2NE-06 1 176915229 176915229 C T ASTN1 Silent p.V694V 0.79 TCGA-ER-A2NE-06 1 196928177 196928177 G A CFHR2 Silent p.G260G 0.76 TCGA-ER-A2NE-06 1 233807194 233807194 G A KCNK1 Missense_Mutation p.G310D 0.45 tolerated(0.54) benign(0) TCGA-ER-A2NE-06 1 33333430 33333430 C G FNDC5 Missense_Mutation p.M66I 0.32 tolerated(0.07) possibly_damaging(0.795) TCGA-ER-A2NE-06 1 38227533 38227533 C T EPHA10 Missense_Mutation p.E132K 0.42 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NE-06 1 42049071 42049071 C T HIVEP3 Silent p.T466T 0.44 TCGA-ER-A2NE-06 1 57189292 57189292 C G C1orf168 Missense_Mutation p.R648T 0.50 deleterious(0.01) possibly_damaging(0.72) TCGA-ER-A2NE-06 1 75038347 75038347 C T C1orf173 Missense_Mutation p.G1016E 0.47 deleterious_low_confidence(0.02) benign(0.001) TCGA-ER-A2NE-06 1 89586829 89586829 C T GBP2 Silent p.E105E 0.40 TCGA-ER-A2NE-06 20 30918011 30918011 C T KIF3B Missense_Mutation p.A679V 0.44 tolerated(0.32) benign(0.089) TCGA-ER-A2NE-06 20 41420038 41420038 G T PTPRT Missense_Mutation p.L95M 0.14 tolerated(0.22) benign(0.067) TCGA-ER-A2NE-06 20 58567484 58567484 C T CDH26 Silent p.S445S 0.42 TCGA-ER-A2NE-06 21 43162114 43162114 G A RIPK4 Silent p.A413A 0.47 TCGA-ER-A2NE-06 22 21174114 21174114 C G PI4KA Missense_Mutation p.E202Q 0.37 tolerated(0.27) benign(0.12) TCGA-ER-A2NE-06 22 21174134 21174134 C G PI4KA Missense_Mutation p.G195A 0.37 tolerated(0.1) probably_damaging(0.998) TCGA-ER-A2NE-06 22 31010335 31010335 G A TCN2 Splice_Site p.X143_splice 0.44 TCGA-ER-A2NE-06 22 31942914 31942914 C T SFI1 Nonsense_Mutation p.Q136* 0.42 TCGA-ER-A2NE-06 22 36922104 36922104 G A EIF3D Missense_Mutation p.P22L 0.40 deleterious(0.04) possibly_damaging(0.904) TCGA-ER-A2NE-06 22 38130518 38130518 C T TRIOBP Missense_Mutation p.S1392F 0.30 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-ER-A2NE-06 22 40803207 40803207 G T SGSM3 Nonsense_Mutation p.E415* 0.39 TCGA-ER-A2NE-06 2 103148791 103148791 G A SLC9A4 Missense_Mutation p.D681N 0.44 tolerated(0.21) benign(0.002) TCGA-ER-A2NE-06 2 107459952 107459952 C T ST6GAL2 Missense_Mutation p.G161E 0.55 benign(0.008) TCGA-ER-A2NE-06 2 120388367 120388367 C T PCDP1 Missense_Mutation p.L622F 0.51 tolerated(0.26) benign(0.077) TCGA-ER-A2NE-06 2 121726377 121726377 A G GLI2 Missense_Mutation p.D244G 0.11 deleterious(0) probably_damaging(0.995) TCGA-ER-A2NE-06 2 167760325 167760325 C T XIRP2 Silent p.S111S 0.56 TCGA-ER-A2NE-06 2 179437711 179437711 G A TTN Missense_Mutation p.S24383L 0.52 TCGA-ER-A2NE-06 2 179472337 179472337 G A TTN Missense_Mutation p.P17693L 0.43 TCGA-ER-A2NE-06 2 179474673 179474673 A G TTN Silent p.P17159P 0.06 TCGA-ER-A2NE-06 2 179611213 179611213 G A TTN Intron 0.42 TCGA-ER-A2NE-06 2 179628974 179628974 G A TTN Silent p.I3348I 0.54 TCGA-ER-A2NE-06 2 186672961 186672961 G A FSIP2 Missense_Mutation p.E6399K 0.37 probably_damaging(0.998) TCGA-ER-A2NE-06 2 219394755 219394755 G A USP37 Missense_Mutation p.P263S 0.50 deleterious(0.01) benign(0.424) TCGA-ER-A2NE-06 2 222308250 222308250 G C EPHA4 Missense_Mutation p.D617E 0.33 tolerated(0.24) possibly_damaging(0.699) TCGA-ER-A2NE-06 2 232035369 232035369 C T PSMD1 Silent p.I935I 0.41 TCGA-ER-A2NE-06 2 26178485 26178485 C T KIF3C Silent p.E565E 0.07 TCGA-ER-A2NE-06 2 27427751 27427751 G A SLC5A6 Silent p.F261F 0.54 TCGA-ER-A2NE-06 2 40656313 40656313 G A SLC8A1 Missense_Mutation p.R370C 0.44 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NE-06 2 69093611 69093611 C T BMP10 Missense_Mutation p.A143T 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-ER-A2NE-06 3 121613329 121613329 T A SLC15A2 Missense_Mutation p.N2K 0.06 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-ER-A2NE-06 3 130422672 130422672 C T PIK3R4 Missense_Mutation p.R998Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NE-06 3 132047108 132047108 C T ACPP Intron 0.45 TCGA-ER-A2NE-06 3 133098779 133098779 C T TMEM108 Missense_Mutation p.S75L 0.54 deleterious_low_confidence(0) benign(0.266) TCGA-ER-A2NE-06 3 148889998 148889998 C T HPS3 Missense_Mutation p.P1002S 0.28 tolerated_low_confidence(0.73) benign(0) TCGA-ER-A2NE-06 3 184293659 184293659 C T EPHB3 Missense_Mutation p.P300S 0.51 tolerated(0.89) benign(0.006) TCGA-ER-A2NE-06 3 192992869 192992869 C T ATP13A5 Missense_Mutation p.G1207S 0.48 tolerated_low_confidence(0.08) benign(0.146) TCGA-ER-A2NE-06 3 197427607 197427607 G A KIAA0226 Silent p.L380L 0.36 TCGA-ER-A2NE-06 3 38592632 38592632 C T SCN5A Missense_Mutation p.S1744N 0.55 tolerated(1) probably_damaging(0.995) TCGA-ER-A2NE-06 3 42917193 42917193 G A CYP8B1 Missense_Mutation p.T39I 0.53 tolerated(0.41) benign(0.084) TCGA-ER-A2NE-06 3 47462218 47462218 G A SCAP Silent p.P463P 0.34 TCGA-ER-A2NE-06 3 49836822 49836822 G A CDHR4 Missense_Mutation p.P33L 0.52 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 3 54959002 54959002 T C LRTM1 Missense_Mutation p.N83S 0.33 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 3 97516954 97516954 G A ARL6 3'UTR 0.44 TCGA-ER-A2NE-06 4 102750985 102750985 A T BANK1 Missense_Mutation p.M31L 0.42 tolerated(0.21) benign(0.009) TCGA-ER-A2NE-06 4 185621975 185621975 G A CENPU Missense_Mutation p.R329W 0.37 tolerated(0.07) benign(0.023) TCGA-ER-A2NE-06 4 22749054 22749054 C T GBA3 Missense_Mutation p.S141F 0.42 tolerated(0.56) benign(0.011) TCGA-ER-A2NE-06 4 25379061 25379062 TC G ANAPC4 Frame_Shift_Del p.F4Lfs*65 0.28 TCGA-ER-A2NE-06 4 40947069 40947069 G T APBB2 Nonsense_Mutation p.S286* 0.44 TCGA-ER-A2NE-06 4 69344581 69344581 C T TMPRSS11E Missense_Mutation p.H328Y 0.44 tolerated(0.1) benign(0.007) TCGA-ER-A2NE-06 4 71024155 71024155 C T C4orf40 Silent p.Y62Y 0.46 TCGA-ER-A2NE-06 4 73013454 73013454 G A NPFFR2 Silent p.R498R 0.35 TCGA-ER-A2NE-06 4 8621281 8621281 C T CPZ Silent p.P632P 0.49 TCGA-ER-A2NE-06 4 88258515 88258515 G A HSD17B11 Silent p.I272I 0.42 TCGA-ER-A2NE-06 5 140189147 140189147 C T PCDHA4 Missense_Mutation p.S792F 0.80 tolerated_low_confidence(0.7) benign(0.086) TCGA-ER-A2NE-06 5 35954319 35954319 C A UGT3A1 Missense_Mutation p.K519N 0.85 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 5 42695075 42695075 G A GHR Missense_Mutation p.G108E 0.88 deleterious(0.03) probably_damaging(1) TCGA-ER-A2NE-06 5 64447589 64447589 C T ADAMTS6 3'UTR 0.93 TCGA-ER-A2NE-06 6 150322321 150322321 C T RAET1K RNA 0.75 TCGA-ER-A2NE-06 6 31997061 31997061 G A C4B Missense_Mutation p.D1208N 0.44 tolerated(0.13) benign(0.009) TCGA-ER-A2NE-06 6 33141174 33141174 G A COL11A2 Missense_Mutation p.P810L 0.42 possibly_damaging(0.851) TCGA-ER-A2NE-06 6 6248600 6248600 A G F13A1 Missense_Mutation p.M248T 0.38 tolerated(0.33) probably_damaging(0.97) TCGA-ER-A2NE-06 6 63989763 63989763 C T LGSN 3'UTR 0.50 TCGA-ER-A2NE-06 7 100184216 100184216 C T FBXO24 5'Flank 0.43 TCGA-ER-A2NE-06 7 127343259 127343259 C T SND1 Missense_Mutation p.P241L 0.37 deleterious(0.01) benign(0.225) TCGA-ER-A2NE-06 7 128490916 128490916 G A FLNC Missense_Mutation p.G1820S 0.42 deleterious(0.04) probably_damaging(1) TCGA-ER-A2NE-06 7 135369006 135369006 C T SLC13A4 Missense_Mutation p.E537K 0.45 deleterious(0.03) probably_damaging(1) TCGA-ER-A2NE-06 7 137773460 137773460 G A AKR1D1 Silent p.R69R 0.46 TCGA-ER-A2NE-06 7 142630581 142630581 G A TRPV5 5'UTR 0.43 TCGA-ER-A2NE-06 7 143028644 143028644 G A CLCN1 Silent p.G355G 0.43 TCGA-ER-A2NE-06 7 144097383 144097383 C T NOBOX Silent p.K289K 0.38 TCGA-ER-A2NE-06 7 149990406 149990406 G A ACTR3C Missense_Mutation p.P50S 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-ER-A2NE-06 7 150490296 150490296 G A TMEM176B Silent p.I160I 0.39 TCGA-ER-A2NE-06 7 48317732 48317732 A G ABCA13 Missense_Mutation p.D2314G 0.44 benign(0.062) TCGA-ER-A2NE-06 7 803575 803575 G A HEATR2 Missense_Mutation p.E583K 0.40 deleterious(0.01) benign(0.403) TCGA-ER-A2NE-06 7 93516204 93516204 C T TFPI2 Silent p.L212L 0.42 TCGA-ER-A2NE-06 8 10470689 10470689 C T RP1L1 Missense_Mutation p.D307N 0.89 probably_damaging(0.993) TCGA-ER-A2NE-06 8 113516040 113516040 C T CSMD3 Missense_Mutation p.G1688R 0.38 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NE-06 8 24253266 24253266 G A ADAMDEC1 Missense_Mutation p.E133K 0.69 deleterious(0.01) probably_damaging(0.909) TCGA-ER-A2NE-06 8 29033614 29033614 G A KIF13B Missense_Mutation p.R306C 0.85 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 8 56863053 56863053 C A LYN Missense_Mutation p.T107K 0.44 deleterious(0.01) benign(0.061) TCGA-ER-A2NE-06 8 77767673 77767673 C T ZFHX4 Missense_Mutation p.P2839L 0.42 benign(0.09) TCGA-ER-A2NE-06 8 82356831 82356831 G A PMP2 Silent p.I84I 0.64 TCGA-ER-A2NE-06 8 95140359 95140359 G A CDH17 3'UTR 0.58 TCGA-ER-A2NE-06 9 107298467 107298467 C T OR13C3 Missense_Mutation p.E210K 0.44 deleterious(0) probably_damaging(0.98) TCGA-ER-A2NE-06 9 130167745 130167745 G A SLC2A8 Silent p.E399E 0.38 TCGA-ER-A2NE-06 9 133759967 133759967 C G ABL1 Missense_Mutation p.R783G 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A2NE-06 9 136029198 136029198 G A GBGT1 Silent p.A270A 0.58 TCGA-ER-A2NE-06 9 74817548 74817548 G A GDA Missense_Mutation p.G92R 0.45 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NE-06 9 77416982 77416982 C A TRPM6 Missense_Mutation p.W614L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A2NE-06 9 86281333 86281333 G A UBQLN1 Missense_Mutation p.P422S 0.40 deleterious(0.02) possibly_damaging(0.641) TCGA-ER-A2NE-06 9 94493274 94493274 G A ROR2 Silent p.N367N 0.38 TCGA-ER-A2NE-06 9 95277159 95277159 C T ECM2 Missense_Mutation p.E270K 0.47 tolerated(0.42) benign(0.025) TCGA-ER-A2NE-06 9 99797857 99797857 G A CTSV Missense_Mutation p.S247F 0.45 deleterious(0.01) probably_damaging(0.972) TCGA-ER-A2NE-06 X 14883218 14883218 C A FANCB Missense_Mutation p.G139C 0.90 deleterious(0) probably_damaging(1) TCGA-ER-A2NE-06 X 15540574 15540574 C G BMX Missense_Mutation p.P206A 0.05 tolerated(0.57) unknown(0) TCGA-ER-A2NE-06 X 15555257 15555257 G A BMX Missense_Mutation p.G408E 0.90 tolerated(0.16) benign(0.103) TCGA-ER-A2NE-06 X 50659304 50659304 C T BMP15 Silent p.S292S 0.91 TCGA-ER-A2NF-01 11 31086649 31086649 C T DCDC1 Missense_Mutation p.D784N 0.25 deleterious(0.03) possibly_damaging(0.827) TCGA-ER-A2NF-01 11 6263033 6263033 C T CNGA4 Intron 0.29 TCGA-ER-A2NF-01 11 6654044 6654044 G A DCHS1 Missense_Mutation p.T900M 0.11 deleterious(0.01) benign(0.313) TCGA-ER-A2NF-01 11 8435127 8435127 G T STK33 Missense_Mutation p.S420Y 0.20 deleterious(0.02) benign(0.169) TCGA-ER-A2NF-01 12 112153653 112153653 C T ACAD10 Silent p.H324H 0.22 TCGA-ER-A2NF-01 14 106829984 106829984 G A IGHV4-34 Missense_Mutation p.P21L 0.20 tolerated(0.07) probably_damaging(0.956) TCGA-ER-A2NF-01 14 106829985 106829985 G A IGHV4-34 Missense_Mutation p.P21S 0.20 deleterious(0.04) possibly_damaging(0.57) TCGA-ER-A2NF-01 14 38723898 38723898 C T CLEC14A Missense_Mutation p.E444K 0.31 deleterious(0.01) possibly_damaging(0.535) TCGA-ER-A2NF-01 15 24924253 24924253 G A NPAP1 Missense_Mutation p.G1080E 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ER-A2NF-01 16 29998819 29998819 C T TAOK2 Missense_Mutation p.R1076W 0.16 deleterious_low_confidence(0) benign(0.402) TCGA-ER-A2NF-01 16 84228914 84228914 C T ADAD2 Missense_Mutation p.A331V 0.10 tolerated(0.07) possibly_damaging(0.511) TCGA-ER-A2NF-01 17 73497865 73497865 C T CASKIN2 Missense_Mutation p.G1097E 0.29 tolerated(0.16) benign(0.133) TCGA-ER-A2NF-01 18 13826737 13826737 G A MC5R Missense_Mutation p.D325N 0.28 tolerated_low_confidence(0.43) benign(0.005) TCGA-ER-A2NF-01 19 15582857 15582857 C T PGLYRP2 Missense_Mutation p.R396H 0.16 tolerated(0.17) benign(0.013) TCGA-ER-A2NF-01 19 16345234 16345234 C T AP1M1 Silent p.L432L 0.24 TCGA-ER-A2NF-01 19 16345235 16345235 C T AP1M1 Missense_Mutation p.R433W 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NF-01 19 40540452 40540452 G A ZNF780B Nonsense_Mutation p.Q772* 0.33 TCGA-ER-A2NF-01 19 41430339 41430339 C T CYP2B7P RNA 0.30 TCGA-ER-A2NF-01 19 43922418 43922418 G A TEX101 Missense_Mutation p.E225K 0.29 deleterious(0) probably_damaging(1) TCGA-ER-A2NF-01 19 45974075 45974075 C T FOSB Silent p.S105S 0.27 TCGA-ER-A2NF-01 19 6821684 6821684 G A VAV1 Missense_Mutation p.G125R 0.16 deleterious(0.01) benign(0.383) TCGA-ER-A2NF-01 1 11272938 11272938 C T MTOR Missense_Mutation p.A1105T 0.23 tolerated(0.37) benign(0.057) TCGA-ER-A2NF-01 1 44432250 44432250 C T IPO13 Silent p.L801L 0.24 TCGA-ER-A2NF-01 20 3674962 3674962 G A SIGLEC1 Silent p.I1054I 0.24 TCGA-ER-A2NF-01 22 22049076 22049076 C T PPIL2 Silent p.F434F 0.20 TCGA-ER-A2NF-01 2 141201982 141201982 G A LRP1B Missense_Mutation p.T3404I 0.27 possibly_damaging(0.803) TCGA-ER-A2NF-01 2 165383625 165383625 C T GRB14 Missense_Mutation p.E168K 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NF-01 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A2NF-01 2 203157788 203157788 T - NOP58 Intron 0.24 TCGA-ER-A2NF-01 2 209191128 209191128 T G PIKFYVE Missense_Mutation p.L1198R 0.22 tolerated(0.38) benign(0) TCGA-ER-A2NF-01 2 29092917 29092917 T G TRMT61B Missense_Mutation p.D76A 0.09 tolerated_low_confidence(0.11) benign(0.001) TCGA-ER-A2NF-01 3 122629053 122629053 G A SEMA5B Silent p.P1185P 0.31 TCGA-ER-A2NF-01 3 1414548 1414548 G A CNTN6 Silent p.R565R 0.18 TCGA-ER-A2NF-01 3 185970917 185970917 C T DGKG Missense_Mutation p.G522E 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A2NF-01 4 145567871 145567871 C T HHIP Missense_Mutation p.A15V 0.28 tolerated_low_confidence(0.16) unknown(0) TCGA-ER-A2NF-01 4 83277705 83277705 A G HNRNPD Missense_Mutation p.Y329H 0.27 tolerated(0.13) probably_damaging(0.986) TCGA-ER-A2NF-01 5 167943886 167943886 C T RARS Missense_Mutation p.S519F 0.28 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NF-01 5 167943887 167943887 C T RARS Silent p.S519S 0.27 TCGA-ER-A2NF-01 5 177683870 177683870 C T COL23A1 Silent p.P278P 0.38 TCGA-ER-A2NF-01 7 75694157 75694157 C T MDH2 Silent p.R257R 0.27 TCGA-ER-A2NF-01 8 2021526 2021526 C A MYOM2 Missense_Mutation p.R356S 0.26 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NF-01 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.48 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 10 101124759 101124759 C T CNNM1 Silent p.L726L 0.27 TCGA-ER-A2NG-06 10 115489149 115489149 A C CASP7 Missense_Mutation p.K287N 0.13 tolerated(0.08) benign(0.104) TCGA-ER-A2NG-06 10 123846376 123846376 G A TACC2 Missense_Mutation p.G1454E 0.26 benign(0.079) TCGA-ER-A2NG-06 10 124034599 124034599 G A BTBD16 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0.03) benign(0.235) TCGA-ER-A2NG-06 10 129903852 129903852 C G MKI67 Missense_Mutation p.Q2084H 0.29 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NG-06 10 134886590 134886590 C T GPR123 Silent p.L208L 0.27 TCGA-ER-A2NG-06 10 26589769 26589769 G A GAD2 Missense_Mutation p.S546N 0.41 deleterious(0.01) probably_damaging(0.922) TCGA-ER-A2NG-06 10 54031112 54031112 C T PRKG1 Silent p.V392V 0.23 TCGA-ER-A2NG-06 10 55581579 55581579 C T PCDH15 3'UTR 0.14 TCGA-ER-A2NG-06 10 61566766 61566766 C T CCDC6 Silent p.R306R 0.23 TCGA-ER-A2NG-06 10 70451265 70451265 C T TET1 Silent p.H2035H 0.33 TCGA-ER-A2NG-06 10 75286500 75286500 G A USP54 Missense_Mutation p.S700F 0.27 deleterious(0) possibly_damaging(0.613) TCGA-ER-A2NG-06 11 1083568 1083568 G A MUC2 Silent p.R746R 0.29 TCGA-ER-A2NG-06 11 118130808 118130808 C T MPZL2 Missense_Mutation p.R182Q 0.24 tolerated(0.19) benign(0.011) TCGA-ER-A2NG-06 11 123900575 123900575 T G OR10G8 Silent p.T82T 0.26 TCGA-ER-A2NG-06 11 124252384 124252384 G A OR8B2 Missense_Mutation p.P286S 0.27 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-ER-A2NG-06 11 2161884 2161884 G A IGF2 Intron 0.12 TCGA-ER-A2NG-06 11 45891260 45891260 C T CRY2 Silent p.I383I 0.18 TCGA-ER-A2NG-06 11 47602407 47602407 A T NDUFS3 Missense_Mutation p.L84F 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 11 47681713 47681713 G C AGBL2 3'UTR 0.15 TCGA-ER-A2NG-06 11 5068287 5068287 C A OR52J3 Missense_Mutation p.H178N 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 11 55340452 55340452 G A OR4C16 Silent p.V283V 0.38 TCGA-ER-A2NG-06 11 56431165 56431165 G A OR5AR1 Missense_Mutation p.D2N 0.24 tolerated(0.34) benign(0.001) TCGA-ER-A2NG-06 11 59271159 59271159 G A OR4D11 Silent p.T37T 0.22 TCGA-ER-A2NG-06 11 63064897 63064897 C T SLC22A10 Missense_Mutation p.S210F 0.36 tolerated(0.21) benign(0.012) TCGA-ER-A2NG-06 11 65788040 65788040 G A CATSPER1 Silent p.F662F 0.25 TCGA-ER-A2NG-06 11 66193543 66193543 G A NPAS4 3'UTR 0.35 TCGA-ER-A2NG-06 12 100594726 100594726 G C ACTR6 Intron 0.09 TCGA-ER-A2NG-06 12 101555774 101555774 C T SLC5A8 Silent p.G536G 0.17 TCGA-ER-A2NG-06 12 109844617 109844617 C T MYO1H Silent p.V313V 0.22 TCGA-ER-A2NG-06 12 109844618 109844618 C T MYO1H Missense_Mutation p.L314F 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A2NG-06 12 121711955 121711955 G A CAMKK2 Silent p.S125S 0.26 TCGA-ER-A2NG-06 12 124229502 124229502 C T ATP6V0A2 Missense_Mutation p.P530S 0.13 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NG-06 12 124832746 124832746 C T NCOR2 Missense_Mutation p.R1320K 0.13 probably_damaging(0.983) TCGA-ER-A2NG-06 12 21036435 21036435 T A SLCO1B3 Missense_Mutation p.D527E 0.33 tolerated(0.16) benign(0.029) TCGA-ER-A2NG-06 12 27068991 27068991 C G ASUN Missense_Mutation p.D398H 0.37 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 12 344305 344305 C T SLC6A13 Missense_Mutation p.G261E 0.24 deleterious(0) probably_damaging(0.982) TCGA-ER-A2NG-06 12 45568302 45568302 G A PLEKHA8P1 RNA 0.15 TCGA-ER-A2NG-06 12 4758313 4758313 C T NDUFA9 Silent p.S7S 0.18 TCGA-ER-A2NG-06 12 51883720 51883720 G A SLC4A8 Missense_Mutation p.M895I 0.11 tolerated(0.05) benign(0.007) TCGA-ER-A2NG-06 12 52981545 52981545 C T KRT72 Missense_Mutation p.G394S 0.20 tolerated(0.29) benign(0.055) TCGA-ER-A2NG-06 12 53563896 53563896 G A CSAD Missense_Mutation p.P248L 0.22 tolerated(0.05) probably_damaging(0.988) TCGA-ER-A2NG-06 12 55945365 55945365 G A OR6C4 Missense_Mutation p.D119N 0.25 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-ER-A2NG-06 12 72024626 72024626 T A ZFC3H1 Silent p.T1193T 0.26 TCGA-ER-A2NG-06 12 7362708 7362708 C G PEX5 Missense_Mutation p.I618M 0.34 deleterious(0) probably_damaging(0.975) TCGA-ER-A2NG-06 12 7521534 7521534 G A CD163L1 Missense_Mutation p.S1356F 0.17 tolerated(0.11) benign(0.353) TCGA-ER-A2NG-06 12 7527496 7527496 G A CD163L1 Missense_Mutation p.P1009S 0.22 tolerated(0.57) benign(0.13) TCGA-ER-A2NG-06 12 81101508 81101508 G A MYF6 Missense_Mutation p.D4N 0.16 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NG-06 12 81110911 81110911 C T MYF5 Silent p.S23S 0.20 TCGA-ER-A2NG-06 12 9316319 9316319 A G PZP Missense_Mutation p.V894A 0.22 tolerated(1) benign(0) TCGA-ER-A2NG-06 13 110850886 110850886 C T COL4A1 Missense_Mutation p.G405R 0.26 unknown(0) TCGA-ER-A2NG-06 13 114514879 114514879 G A TMEM255B 3'UTR 0.34 TCGA-ER-A2NG-06 13 115090792 115090792 T C CHAMP1 Missense_Mutation p.V492A 0.30 tolerated(0.13) benign(0.021) TCGA-ER-A2NG-06 13 115090797 115090797 C T CHAMP1 Missense_Mutation p.P494S 0.30 tolerated(0.16) benign(0.27) TCGA-ER-A2NG-06 13 32981800 32981800 C G N4BP2L1 Missense_Mutation p.E97Q 0.34 deleterious(0.01) benign(0.1) TCGA-ER-A2NG-06 13 45515431 45515431 T G NUFIP1 Missense_Mutation p.E466D 0.30 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NG-06 13 67799670 67799670 G A PCDH9 Missense_Mutation p.P968L 0.31 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 13 67799671 67799671 G A PCDH9 Missense_Mutation p.P968S 0.32 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 14 104571026 104571026 C T ASPG Missense_Mutation p.S335L 0.23 deleterious(0.02) benign(0.141) TCGA-ER-A2NG-06 14 106235796 106235796 G C IGHG3 Silent p.P304P 0.21 TCGA-ER-A2NG-06 14 22038000 22038000 C T OR10G3 Silent p.R292R 0.22 TCGA-ER-A2NG-06 14 22237049 22237049 G A TRAV6 Silent p.K42K 0.31 TCGA-ER-A2NG-06 14 22392580 22392580 G A TRAV14DV4 Missense_Mutation p.E35K 0.25 TCGA-ER-A2NG-06 14 52781313 52781313 G C PTGER2 Missense_Mutation p.R16P 0.23 tolerated(0.27) benign(0.003) TCGA-ER-A2NG-06 14 61447770 61447770 G A TRMT5 5'UTR 0.31 TCGA-ER-A2NG-06 14 70712829 70712829 T A ADAM21P1 RNA 0.13 TCGA-ER-A2NG-06 14 70714307 70714307 G C ADAM21P1 RNA 0.19 TCGA-ER-A2NG-06 14 70925765 70925765 A T ADAM21 Missense_Mutation p.I517F 0.11 deleterious(0) probably_damaging(0.936) TCGA-ER-A2NG-06 14 75283808 75283808 G C YLPM1 Missense_Mutation p.E1954Q 0.22 possibly_damaging(0.711) TCGA-ER-A2NG-06 14 75928163 75928163 G A JDP2 Missense_Mutation p.R90Q 0.41 tolerated(0.09) benign(0.008) TCGA-ER-A2NG-06 14 92909750 92909750 C T SLC24A4 Missense_Mutation p.R197C 0.15 tolerated(0.19) benign(0.013) TCGA-ER-A2NG-06 14 93393957 93393957 C T CHGA Missense_Mutation p.L84F 0.22 deleterious(0.05) possibly_damaging(0.834) TCGA-ER-A2NG-06 14 94395153 94395153 G A FAM181A Silent p.L236L 0.20 TCGA-ER-A2NG-06 14 95029969 95029969 G A SERPINA4 Silent p.K50K 0.23 TCGA-ER-A2NG-06 15 102192496 102192496 C G TM2D3 Missense_Mutation p.Q23H 0.16 deleterious(0.04) probably_damaging(0.957) TCGA-ER-A2NG-06 15 23890082 23890082 G A MAGEL2 Silent p.H333H 0.09 TCGA-ER-A2NG-06 15 43875664 43875664 A C PPIP5K1 Missense_Mutation p.I94S 0.23 deleterious(0) probably_damaging(0.995) TCGA-ER-A2NG-06 15 45660395 45660395 G A GATM Missense_Mutation p.P183L 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 15 66161882 66161882 G C RAB11A 5'UTR 0.13 TCGA-ER-A2NG-06 15 66604071 66604071 G A DIS3L Missense_Mutation p.D190N 0.19 tolerated(0.18) benign(0.005) TCGA-ER-A2NG-06 15 75310792 75310792 G A SCAMP5 Silent p.T143T 0.27 TCGA-ER-A2NG-06 15 83440852 83440852 C T FSD2 Missense_Mutation p.D414N 0.21 tolerated(0.37) benign(0.077) TCGA-ER-A2NG-06 15 89402335 89402335 C T ACAN Silent p.T2173T 0.22 TCGA-ER-A2NG-06 16 1261270 1261270 C T CACNA1H Silent p.I1442I 0.23 TCGA-ER-A2NG-06 16 15851732 15851732 G C MYH11 Missense_Mutation p.I516M 0.21 possibly_damaging(0.887) TCGA-ER-A2NG-06 16 28493690 28493690 A C CLN3 Missense_Mutation p.F307C 0.29 deleterious(0) probably_damaging(0.954) TCGA-ER-A2NG-06 16 30749824 30749824 C T SRCAP Silent p.P2821P 0.32 TCGA-ER-A2NG-06 16 3406086 3406086 C T OR2C1 Missense_Mutation p.S49F 0.17 deleterious(0.01) benign(0.016) TCGA-ER-A2NG-06 16 4412725 4412725 G A CORO7 Silent p.S430S 0.27 TCGA-ER-A2NG-06 16 47294474 47294474 G A ITFG1 Silent p.F401F 0.20 TCGA-ER-A2NG-06 16 5053559 5053559 C T SEC14L5 Silent p.P429P 0.33 TCGA-ER-A2NG-06 16 55905539 55905539 G A CES5A Missense_Mutation p.P168S 0.25 deleterious(0.01) benign(0.39) TCGA-ER-A2NG-06 16 56666641 56666641 G C MT1M 5'UTR 0.16 TCGA-ER-A2NG-06 16 614009 614009 G A C16orf11 Missense_Mutation p.A239T 0.35 tolerated(0.4) possibly_damaging(0.473) TCGA-ER-A2NG-06 16 70601421 70601421 C T SF3B3 Silent p.L978L 0.23 TCGA-ER-A2NG-06 16 89260319 89260319 G A CDH15 Missense_Mutation p.D717N 0.36 deleterious(0.02) benign(0.151) TCGA-ER-A2NG-06 16 89598917 89598917 C T SPG7 Silent p.A399A 0.23 TCGA-ER-A2NG-06 17 20805780 20805780 C T RP11-344E13.3 RNA 0.23 TCGA-ER-A2NG-06 17 34499251 34499251 T A TBC1D3B Missense_Mutation p.R154W 0.09 deleterious(0.05) probably_damaging(0.997) TCGA-ER-A2NG-06 17 35825629 35825629 C T TADA2A Silent p.F269F 0.27 TCGA-ER-A2NG-06 17 38508593 38508593 C T RARA Missense_Mutation p.S214L 0.34 deleterious(0.05) benign(0.28) TCGA-ER-A2NG-06 17 38854842 38854842 C T KRT24 Silent p.R474R 0.41 TCGA-ER-A2NG-06 17 73237075 73237075 C G GGA3 Missense_Mutation p.S337T 0.52 tolerated(0.53) benign(0.004) TCGA-ER-A2NG-06 18 48248339 48248339 C T MAPK4 Silent p.I241I 0.35 TCGA-ER-A2NG-06 18 54291641 54291641 G A TXNL1 Nonsense_Mutation p.R83* 0.24 TCGA-ER-A2NG-06 18 72344446 72344446 G A ZNF407 Missense_Mutation p.V491M 0.17 tolerated(0.14) benign(0.012) TCGA-ER-A2NG-06 19 1081008 1081008 C G HMHA1 Missense_Mutation p.A728G 0.27 deleterious(0) benign(0.106) TCGA-ER-A2NG-06 19 12155500 12155500 G A ZNF878 Missense_Mutation p.P239L 0.23 tolerated(0.43) benign(0.001) TCGA-ER-A2NG-06 19 12766548 12766548 G A MAN2B1 Missense_Mutation p.P597L 0.20 tolerated(0.06) benign(0.013) TCGA-ER-A2NG-06 19 16620727 16620727 G - C19orf44 Frame_Shift_Del p.V523* 0.14 TCGA-ER-A2NG-06 19 16899852 16899852 G A NWD1 Missense_Mutation p.D931N 0.20 deleterious(0.02) probably_damaging(1) TCGA-ER-A2NG-06 19 18965518 18965518 G A UPF1 Missense_Mutation p.R422K 0.25 deleterious(0) probably_damaging(0.985) TCGA-ER-A2NG-06 19 19381082 19381082 C T TM6SF2 Missense_Mutation p.E101K 0.25 deleterious(0) benign(0.242) TCGA-ER-A2NG-06 19 19681003 19681003 C T PBX4 Missense_Mutation p.G183S 0.18 tolerated(0.17) benign(0.037) TCGA-ER-A2NG-06 19 33623254 33623254 C T WDR88 Missense_Mutation p.P60L 0.13 deleterious(0) probably_damaging(0.92) TCGA-ER-A2NG-06 19 35827052 35827052 T G CD22 Missense_Mutation p.W176G 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 19 36321786 36321786 G A NPHS1 Missense_Mutation p.P1185L 0.15 tolerated(0.12) benign(0.004) TCGA-ER-A2NG-06 19 38983275 38983275 C T RYR1 Silent p.P2091P 0.17 TCGA-ER-A2NG-06 19 40901365 40901365 G A PRX Missense_Mutation p.S965L 0.42 deleterious(0) possibly_damaging(0.504) TCGA-ER-A2NG-06 19 41113436 41113436 G A LTBP4 Splice_Site p.X453_splice 0.47 TCGA-ER-A2NG-06 19 41518327 41518327 C T CYP2B6 Silent p.L363L 0.15 TCGA-ER-A2NG-06 19 43258474 43258474 G A PSG8 Silent p.I418I 0.15 TCGA-ER-A2NG-06 19 43258475 43258475 A C PSG8 Missense_Mutation p.I418S 0.14 tolerated(0.06) benign(0.003) TCGA-ER-A2NG-06 19 44352211 44352211 C T ZNF283 Silent p.S486S 0.13 TCGA-ER-A2NG-06 19 51470570 51470570 C T KLK6 Missense_Mutation p.E18K 0.33 tolerated(0.1) possibly_damaging(0.521) TCGA-ER-A2NG-06 19 51470571 51470571 C T KLK6 Silent p.E17E 0.29 TCGA-ER-A2NG-06 19 51647745 51647745 G A SIGLEC7 Nonsense_Mutation p.W172* 0.28 TCGA-ER-A2NG-06 19 6665054 6665054 G A TNFSF14 Silent p.F202F 0.61 TCGA-ER-A2NG-06 1 100550937 100550937 C T SASS6 Missense_Mutation p.A641T 0.30 tolerated(0.37) benign(0.006) TCGA-ER-A2NG-06 1 10720200 10720203 ACAC CAA CASZ1 Frame_Shift_Del p.S299Ifs*8 0.12 TCGA-ER-A2NG-06 1 119619093 119619093 G A WARS2 Silent p.L76L 0.17 TCGA-ER-A2NG-06 1 12186103 12186103 C T TNFRSF8 Missense_Mutation p.R417W 0.30 tolerated(0.08) benign(0.045) TCGA-ER-A2NG-06 1 153909095 153909095 A G DENND4B Missense_Mutation p.S788P 0.10 tolerated(0.23) benign(0.174) TCGA-ER-A2NG-06 1 15817724 15817724 G A CASP9 3'Flank 0.34 TCGA-ER-A2NG-06 1 160062370 160062370 G A IGSF8 Silent p.A476A 0.30 TCGA-ER-A2NG-06 1 160786462 160786462 C T LY9 Missense_Mutation p.S384F 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-ER-A2NG-06 1 16352685 16352685 G A CLCNKA Silent p.K147K 0.26 TCGA-ER-A2NG-06 1 166926004 166926004 C T ILDR2 Silent p.G155G 0.32 TCGA-ER-A2NG-06 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.26 deleterious(0.02) benign(0.036) TCGA-ER-A2NG-06 1 17084276 17084276 C T MST1L RNA 0.08 TCGA-ER-A2NG-06 1 177930028 177930028 A C SEC16B Silent p.P278P 0.22 TCGA-ER-A2NG-06 1 18152407 18152407 C T ACTL8 Missense_Mutation p.P165L 0.29 deleterious(0.01) possibly_damaging(0.638) TCGA-ER-A2NG-06 1 204403714 204403714 G A PIK3C2B Missense_Mutation p.S1180F 0.20 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 1 207644123 207644123 G A CR2 Missense_Mutation p.E422K 0.20 tolerated(0.12) benign(0.12) TCGA-ER-A2NG-06 1 211469090 211469090 C T RCOR3 Missense_Mutation p.P338S 0.15 tolerated(0.16) benign(0.003) TCGA-ER-A2NG-06 1 213146088 213146088 T G VASH2 Missense_Mutation p.F178V 0.23 deleterious(0) benign(0.234) TCGA-ER-A2NG-06 1 228462473 228462473 C G OBSCN Missense_Mutation p.L2337V 0.27 probably_damaging(0.999) TCGA-ER-A2NG-06 1 24018309 24018309 C T RPL11 5'UTR 0.22 TCGA-ER-A2NG-06 1 241031915 241031915 C T RGS7 Missense_Mutation p.R194K 0.16 deleterious(0) probably_damaging(0.954) TCGA-ER-A2NG-06 1 24113867 24113867 G A PITHD1 3'UTR 0.20 TCGA-ER-A2NG-06 1 24113868 24113868 G A PITHD1 3'UTR 0.18 TCGA-ER-A2NG-06 1 29189427 29189427 G A OPRD1 Missense_Mutation p.E251K 0.11 tolerated(0.17) possibly_damaging(0.692) TCGA-ER-A2NG-06 1 42050146 42050146 C T HIVEP3 Missense_Mutation p.G108D 0.20 possibly_damaging(0.543) TCGA-ER-A2NG-06 1 47278210 47278210 A C CYP4B1 Missense_Mutation p.H137P 0.16 deleterious(0) probably_damaging(0.943) TCGA-ER-A2NG-06 1 47279916 47279916 G A CYP4B1 Missense_Mutation p.D271N 0.14 tolerated(0.54) benign(0.039) TCGA-ER-A2NG-06 1 47581254 47581254 G A CYP4Z1 Missense_Mutation p.E419K 0.24 tolerated(0.5) benign(0.041) TCGA-ER-A2NG-06 1 52859236 52859236 G A ORC1 Nonsense_Mutation p.R321* 0.14 TCGA-ER-A2NG-06 1 63998342 63998342 G A EFCAB7 Missense_Mutation p.R134K 0.07 tolerated(0.29) benign(0.001) TCGA-ER-A2NG-06 1 65255083 65255083 C T RAVER2 Nonsense_Mutation p.Q331* 0.26 TCGA-ER-A2NG-06 1 8418476 8418476 G A RERE Silent p.P1373P 0.19 TCGA-ER-A2NG-06 1 94670745 94670745 G A ARHGAP29 Missense_Mutation p.S190F 0.21 tolerated(0.08) probably_damaging(0.998) TCGA-ER-A2NG-06 20 17434472 17434472 C T PCSK2 Missense_Mutation p.S324F 0.31 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NG-06 20 31427587 31427587 G A MAPRE1 Silent p.K174K 0.25 TCGA-ER-A2NG-06 20 47267975 47267975 T C PREX1 Missense_Mutation p.K872E 0.29 deleterious(0) possibly_damaging(0.566) TCGA-ER-A2NG-06 20 55913332 55913332 G A SPO11 Missense_Mutation p.G249R 0.37 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NG-06 20 62126161 62126161 G A EEF1A2 Silent p.P206P 0.12 TCGA-ER-A2NG-06 20 9440420 9440420 G A PLCB4 Missense_Mutation p.E1059K 0.15 tolerated(0.53) benign(0.245) TCGA-ER-A2NG-06 21 15858413 15858413 T C SAMSN1 Silent p.E382E 0.35 TCGA-ER-A2NG-06 21 15918571 15918571 T C SAMSN1 Intron 0.36 TCGA-ER-A2NG-06 21 34988899 34988899 G A CRYZL1 Intron 0.40 TCGA-ER-A2NG-06 21 36421244 36421244 G A RUNX1 5'UTR 0.27 TCGA-ER-A2NG-06 21 38555196 38555196 G C TTC3 Missense_Mutation p.V1580L 0.31 tolerated(0.65) benign(0.001) TCGA-ER-A2NG-06 21 41719724 41719724 C T DSCAM Silent p.R361R 0.12 TCGA-ER-A2NG-06 21 46011584 46011584 C T KRTAP10-6 Missense_Mutation p.C261Y 0.23 deleterious(0.01) unknown(0) TCGA-ER-A2NG-06 21 46916433 46916433 G C COL18A1 Missense_Mutation p.G1023A 0.14 probably_damaging(0.999) TCGA-ER-A2NG-06 21 46916434 46916434 A C COL18A1 Silent p.G1023G 0.13 TCGA-ER-A2NG-06 21 47545524 47545524 C T COL6A2 Silent p.S654S 0.14 TCGA-ER-A2NG-06 21 47552187 47552187 C G COL6A2 Silent p.A927A 0.26 TCGA-ER-A2NG-06 21 47786747 47786747 A T PCNT Missense_Mutation p.H953L 0.20 possibly_damaging(0.507) TCGA-ER-A2NG-06 22 17976561 17976561 C T CECR2 Silent p.I75I 0.41 TCGA-ER-A2NG-06 22 18979458 18979458 G A DGCR5 RNA 0.32 TCGA-ER-A2NG-06 22 26164456 26164456 G A MYO18B Silent p.K191K 0.16 TCGA-ER-A2NG-06 22 28146960 28146960 C T MN1 Silent p.R1302R 0.29 TCGA-ER-A2NG-06 22 36661727 36661727 A C APOL1 Missense_Mutation p.D298A 0.17 tolerated(0.16) benign(0.069) TCGA-ER-A2NG-06 2 103061796 103061796 A G IL18RAP Silent p.R356R 0.11 TCGA-ER-A2NG-06 2 103068746 103068746 G A IL18RAP 3'UTR 0.24 TCGA-ER-A2NG-06 2 107073477 107073477 C T RGPD3 Missense_Mutation p.E119K 0.20 deleterious(0) probably_damaging(0.954) TCGA-ER-A2NG-06 2 112605420 112605420 G A ANAPC1 Missense_Mutation p.P558L 0.32 tolerated(0.16) possibly_damaging(0.504) TCGA-ER-A2NG-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.23 TCGA-ER-A2NG-06 2 132021834 132021834 C T POTEE Silent p.L936L 0.07 TCGA-ER-A2NG-06 2 133543033 133543033 G A NCKAP5 Missense_Mutation p.P451S 0.20 tolerated(0.24) benign(0.023) TCGA-ER-A2NG-06 2 162815020 162815020 T G SLC4A10 Nonsense_Mutation p.Y939* 0.16 TCGA-ER-A2NG-06 2 166019313 166019313 C T SCN3A Silent p.L240L 0.27 TCGA-ER-A2NG-06 2 168101989 168101989 A C XIRP2 Missense_Mutation p.N1363H 0.26 benign(0.315) TCGA-ER-A2NG-06 2 170465225 170465225 A G PPIG Missense_Mutation p.M112V 0.14 deleterious(0.01) possibly_damaging(0.893) TCGA-ER-A2NG-06 2 179455759 179455759 C T TTN Silent p.L20231L 0.25 TCGA-ER-A2NG-06 2 187626379 187626379 C T FAM171B Missense_Mutation p.P437L 0.29 tolerated(0.14) probably_damaging(0.979) TCGA-ER-A2NG-06 2 196602695 196602695 C T DNAH7 Missense_Mutation p.E4009K 0.22 tolerated(0.83) benign(0.12) TCGA-ER-A2NG-06 2 196651805 196651805 G A DNAH7 Missense_Mutation p.P3603S 0.29 deleterious(0) probably_damaging(0.943) TCGA-ER-A2NG-06 2 198266520 198266520 G A SF3B1 Silent p.I772I 0.11 TCGA-ER-A2NG-06 2 202571691 202571691 G A ALS2 Silent p.Y1486Y 0.27 TCGA-ER-A2NG-06 2 220087022 220087022 G A ATG9A Missense_Mutation p.R667W 0.20 tolerated(0.07) possibly_damaging(0.528) TCGA-ER-A2NG-06 2 222347308 222347308 G A EPHA4 Missense_Mutation p.S361F 0.18 tolerated(0.07) possibly_damaging(0.567) TCGA-ER-A2NG-06 2 238285927 238285927 G A COL6A3 Missense_Mutation p.P853L 0.27 possibly_damaging(0.842) TCGA-ER-A2NG-06 2 242757595 242757595 G A NEU4 Missense_Mutation p.A239T 0.56 deleterious(0.01) probably_damaging(0.982) TCGA-ER-A2NG-06 2 26533824 26533824 C T GPR113 Silent p.G924G 0.30 TCGA-ER-A2NG-06 2 28854914 28854914 C T PLB1 Silent p.S1303S 0.18 TCGA-ER-A2NG-06 2 29295441 29295441 C T C2orf71 Missense_Mutation p.D563N 0.26 deleterious(0.01) probably_damaging(0.913) TCGA-ER-A2NG-06 2 48808304 48808304 G A STON1-GTF2A1L Missense_Mutation p.E178K 0.12 tolerated(0.29) possibly_damaging(0.459) TCGA-ER-A2NG-06 2 71650395 71650395 A T ZNF638 Missense_Mutation p.I1251F 0.24 tolerated(1) benign(0) TCGA-ER-A2NG-06 2 75117984 75117984 C T HK2 Silent p.F890F 0.24 TCGA-ER-A2NG-06 2 79314027 79314027 G A REG1B Missense_Mutation p.P32S 0.27 tolerated(0.2) benign(0) TCGA-ER-A2NG-06 2 85892783 85892783 G A SFTPB Silent p.L188L 0.19 TCGA-ER-A2NG-06 2 85893805 85893805 G A SFTPB Missense_Mutation p.P122S 0.19 tolerated(0.23) benign(0.145) TCGA-ER-A2NG-06 3 10960102 10960102 G A SLC6A11 Missense_Mutation p.E362K 0.26 tolerated(0.08) probably_damaging(0.939) TCGA-ER-A2NG-06 3 133692579 133692579 C G SLCO2A1 Missense_Mutation p.A109P 0.13 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 3 1418728 1418728 G A CNTN6 Missense_Mutation p.G712E 0.34 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 3 173322668 173322668 C T NLGN1 Missense_Mutation p.R94C 0.35 deleterious(0) probably_damaging(0.998) TCGA-ER-A2NG-06 3 183368286 183368286 C T KLHL24 Missense_Mutation p.H48Y 0.37 deleterious(0.02) possibly_damaging(0.614) TCGA-ER-A2NG-06 3 190122712 190122712 G C CLDN16 Missense_Mutation p.A197P 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-ER-A2NG-06 3 33058329 33058329 G A GLB1 Missense_Mutation p.P451S 0.38 tolerated(0.4) benign(0.052) TCGA-ER-A2NG-06 3 47702787 47702787 G C SMARCC1 Missense_Mutation p.L773V 0.36 tolerated(0.28) benign(0.01) TCGA-ER-A2NG-06 3 52610700 52610700 C T PBRM1 Nonsense_Mutation p.W1158* 0.46 TCGA-ER-A2NG-06 3 72866508 72866508 T A SHQ1 Missense_Mutation p.Q252L 0.19 tolerated(0.06) possibly_damaging(0.626) TCGA-ER-A2NG-06 3 93615531 93615531 A T PROS1 Missense_Mutation p.V285D 0.09 deleterious(0) possibly_damaging(0.905) TCGA-ER-A2NG-06 4 113540102 113540102 G T C4orf21 Missense_Mutation p.L366I 0.08 tolerated(0.24) possibly_damaging(0.636) TCGA-ER-A2NG-06 4 121957792 121957792 G A NDNF Missense_Mutation p.P445L 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 4 121957793 121957793 G A NDNF Missense_Mutation p.P445S 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-ER-A2NG-06 4 154625113 154625113 C T TLR2 Missense_Mutation p.P352S 0.25 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NG-06 4 185310022 185310022 A C IRF2 Missense_Mutation p.S314A 0.12 tolerated(0.94) benign(0) TCGA-ER-A2NG-06 4 38995373 38995373 C T TMEM156 Missense_Mutation p.E202K 0.23 tolerated(0.25) probably_damaging(0.981) TCGA-ER-A2NG-06 4 46314589 46314589 A T GABRA2 Missense_Mutation p.S134T 0.12 deleterious(0) probably_damaging(0.992) TCGA-ER-A2NG-06 4 48517230 48517230 T G FRYL Silent p.I2584I 0.23 TCGA-ER-A2NG-06 4 73987424 73987424 G A ANKRD17 Missense_Mutation p.S1182F 0.28 probably_damaging(0.916) TCGA-ER-A2NG-06 4 81974564 81974564 G A BMP3 Silent p.G431G 0.25 TCGA-ER-A2NG-06 4 84026067 84026067 C T PLAC8 Silent p.R75R 0.26 TCGA-ER-A2NG-06 4 89588561 89588561 C T HERC3 Silent p.I455I 0.33 TCGA-ER-A2NG-06 5 10390517 10390517 G C MARCH6 Missense_Mutation p.V161L 0.23 deleterious(0.05) possibly_damaging(0.78) TCGA-ER-A2NG-06 5 110427937 110427937 C T WDR36 5'UTR 0.33 TCGA-ER-A2NG-06 5 123983396 123983396 G A ZNF608 Missense_Mutation p.P894L 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 5 135272416 135272416 T G FBXL21 5'Flank 0.22 TCGA-ER-A2NG-06 5 137354780 137354780 A C FAM13B Silent p.P7P 0.27 TCGA-ER-A2NG-06 5 137766083 137766083 C T KDM3B Missense_Mutation p.A1680V 0.22 tolerated(0.3) possibly_damaging(0.759) TCGA-ER-A2NG-06 5 140174681 140174681 C T PCDHA2 Silent p.F44F 0.22 TCGA-ER-A2NG-06 5 140242780 140242780 C T AC005609.1 Missense_Mutation p.D66N 0.25 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-ER-A2NG-06 5 140431786 140431786 G A PCDHB1 Missense_Mutation p.R244Q 0.32 tolerated(1) benign(0.033) TCGA-ER-A2NG-06 5 140502321 140502321 G T PCDHB4 Silent p.G247G 0.22 TCGA-ER-A2NG-06 5 140626761 140626761 C T PCDHB15 Missense_Mutation p.P539S 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-ER-A2NG-06 5 26915882 26915882 G A CDH9 Missense_Mutation p.R127C 0.31 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 5 59064286 59064286 T A PDE4D Intron 0.25 TCGA-ER-A2NG-06 5 66461218 66461218 G A MAST4 Missense_Mutation p.E2071K 0.21 possibly_damaging(0.516) TCGA-ER-A2NG-06 5 71756366 71756366 G A ZNF366 Nonsense_Mutation p.Q320* 0.18 TCGA-ER-A2NG-06 5 73931057 73931057 G A ENC1 Silent p.D418D 0.29 TCGA-ER-A2NG-06 5 82837484 82837484 G C VCAN Missense_Mutation p.E2888Q 0.24 deleterious(0.01) benign(0.342) TCGA-ER-A2NG-06 6 107008779 107008779 G A AIM1 Missense_Mutation p.G1578D 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 6 112430601 112430601 C G LAMA4 3'UTR 0.38 TCGA-ER-A2NG-06 6 117114015 117114015 C T GPRC6A Missense_Mutation p.D691N 0.18 tolerated(0.5) benign(0.17) TCGA-ER-A2NG-06 6 117128035 117128035 A C GPRC6A Missense_Mutation p.L278R 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-ER-A2NG-06 6 117245873 117245873 C T RFX6 Missense_Mutation p.L533F 0.14 tolerated(0.06) possibly_damaging(0.757) TCGA-ER-A2NG-06 6 152652612 152652612 G A SYNE1 Missense_Mutation p.S4403L 0.31 benign(0.075) TCGA-ER-A2NG-06 6 160679718 160679718 G A SLC22A2 Silent p.F24F 0.10 TCGA-ER-A2NG-06 6 166580255 166580255 T C T Missense_Mutation p.N99S 0.39 tolerated(0.72) benign(0.003) TCGA-ER-A2NG-06 6 26468710 26468710 C G BTN2A1 Missense_Mutation p.A506G 0.05 deleterious(0.03) possibly_damaging(0.887) TCGA-ER-A2NG-06 6 28483487 28483487 G A GPX6 Silent p.L12L 0.13 TCGA-ER-A2NG-06 6 28541106 28541106 C T SCAND3 Missense_Mutation p.E854K 0.25 tolerated(0.49) probably_damaging(0.992) TCGA-ER-A2NG-06 6 29141485 29141485 G A OR2J2 Missense_Mutation p.E25K 0.19 deleterious(0) probably_damaging(0.994) TCGA-ER-A2NG-06 6 30569237 30569237 G A PPP1R10 3'UTR 0.29 TCGA-ER-A2NG-06 6 31083736 31083736 C T CDSN 3'UTR 0.22 TCGA-ER-A2NG-06 6 32902712 32902712 C T HLA-DMB 3'UTR 0.15 TCGA-ER-A2NG-06 6 33136775 33136775 C G COL11A2 Missense_Mutation p.G1184A 0.18 unknown(0) TCGA-ER-A2NG-06 6 33272288 33272288 G A TAPBP Silent p.L332L 0.26 TCGA-ER-A2NG-06 6 36929689 36929689 C T PI16 Silent p.Y177Y 0.12 TCGA-ER-A2NG-06 6 36929690 36929690 C T PI16 Nonsense_Mutation p.Q178* 0.12 TCGA-ER-A2NG-06 6 40400278 40400278 G A LRFN2 Missense_Mutation p.T192I 0.15 tolerated(0.12) probably_damaging(0.98) TCGA-ER-A2NG-06 6 49754123 49754123 C T PGK2 Missense_Mutation p.E260K 0.21 tolerated(0.11) benign(0.014) TCGA-ER-A2NG-06 6 50740509 50740509 G A TFAP2D Missense_Mutation p.E431K 0.19 tolerated(0.2) benign(0.016) TCGA-ER-A2NG-06 6 75814981 75814981 G A COL12A1 Missense_Mutation p.P2736S 0.16 probably_damaging(0.998) TCGA-ER-A2NG-06 6 75899338 75899338 C T COL12A1 Silent p.Q196Q 0.16 TCGA-ER-A2NG-06 7 120480103 120480103 G C TSPAN12 Missense_Mutation p.L43V 0.17 deleterious(0.02) possibly_damaging(0.651) TCGA-ER-A2NG-06 7 123092876 123092876 C T IQUB Missense_Mutation p.G766D 0.47 tolerated_low_confidence(0.51) benign(0.006) TCGA-ER-A2NG-06 7 130418269 130418269 G A KLF14 Missense_Mutation p.P198S 0.41 tolerated(0.58) benign(0.017) TCGA-ER-A2NG-06 7 133981163 133981163 G A SLC35B4 Silent p.L243L 0.51 TCGA-ER-A2NG-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-ER-A2NG-06 7 142206977 142206977 G A TRBV10-2 5'UTR 0.48 TCGA-ER-A2NG-06 7 150171534 150171534 G A GIMAP8 Missense_Mutation p.D373N 0.44 tolerated(0.26) benign(0.096) TCGA-ER-A2NG-06 7 23180540 23180540 C G KLHL7 Missense_Mutation p.L199V 0.24 deleterious(0.01) possibly_damaging(0.675) TCGA-ER-A2NG-06 7 44620740 44620740 C G TMED4 Missense_Mutation p.Q162H 0.18 tolerated(0.38) probably_damaging(0.971) TCGA-ER-A2NG-06 7 4874770 4874770 G C RADIL Missense_Mutation p.P295R 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 7 49842382 49842382 G A VWC2 Missense_Mutation p.E258K 0.44 deleterious(0.02) possibly_damaging(0.766) TCGA-ER-A2NG-06 7 77762378 77762378 C T MAGI2 Splice_Site p.X1011_splice 0.59 TCGA-ER-A2NG-06 7 82785402 82785402 G A PCLO Silent p.S185S 0.50 TCGA-ER-A2NG-06 7 83277754 83277754 C G SEMA3E Silent p.L35L 0.15 TCGA-ER-A2NG-06 7 99799470 99799470 C G STAG3 Missense_Mutation p.S761C 0.20 deleterious(0) benign(0.153) TCGA-ER-A2NG-06 8 110504188 110504188 G A PKHD1L1 Missense_Mutation p.D3401N 0.33 deleterious(0) possibly_damaging(0.499) TCGA-ER-A2NG-06 8 113668566 113668566 G A CSMD3 Nonsense_Mutation p.Q941* 0.27 TCGA-ER-A2NG-06 8 133673737 133673737 G C LRRC6 Silent p.L49L 0.21 TCGA-ER-A2NG-06 8 144890932 144890932 A C SCRIB Silent p.A654A 0.30 TCGA-ER-A2NG-06 8 144997325 144997325 C G PLEC Missense_Mutation p.D2395H 0.17 probably_damaging(0.984) TCGA-ER-A2NG-06 8 1808199 1808199 C T ARHGEF10 Silent p.P110P 0.18 TCGA-ER-A2NG-06 8 28206337 28206337 C T ZNF395 Missense_Mutation p.G481R 0.27 deleterious(0) probably_damaging(1) TCGA-ER-A2NG-06 8 41525854 41525854 C T ANK1 Silent p.R1816R 0.18 TCGA-ER-A2NG-06 8 52321550 52321550 C T PXDNL Silent p.V878V 0.22 TCGA-ER-A2NG-06 8 67066388 67066388 G A TRIM55 Missense_Mutation p.G448D 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-ER-A2NG-06 8 74650519 74650519 C G STAU2 Intron 0.17 TCGA-ER-A2NG-06 8 85441712 85441712 C T RALYL Silent p.S65S 0.29 TCGA-ER-A2NG-06 9 101980896 101980896 G A ALG2 Silent p.L191L 0.27 TCGA-ER-A2NG-06 9 107288807 107288807 C T OR13C4 Silent p.T228T 0.22 TCGA-ER-A2NG-06 9 108424991 108424991 G A TAL2 Missense_Mutation p.G72R 0.32 tolerated(0.06) possibly_damaging(0.817) TCGA-ER-A2NG-06 9 109688887 109688887 C T ZNF462 Silent p.F898F 0.29 TCGA-ER-A2NG-06 9 123789470 123789470 C T C5 Missense_Mutation p.E281K 0.15 tolerated(0.87) benign(0.011) TCGA-ER-A2NG-06 9 125424517 125424517 C T OR1L1 Missense_Mutation p.H175Y 0.23 tolerated(0.57) benign(0.033) TCGA-ER-A2NG-06 9 130549800 130549800 C T CDK9 Missense_Mutation p.P60S 0.16 deleterious(0.05) probably_damaging(0.967) TCGA-ER-A2NG-06 9 136444264 136444264 G C FAM163B Missense_Mutation p.S127R 0.21 tolerated(0.37) benign(0.031) TCGA-ER-A2NG-06 9 136516842 136516842 G A DBH Silent p.R426R 0.45 TCGA-ER-A2NG-06 9 136516843 136516843 G A DBH Missense_Mutation p.D427N 0.45 tolerated(0.38) benign(0.02) TCGA-ER-A2NG-06 9 136594959 136594959 C T SARDH Missense_Mutation p.M281I 0.14 deleterious(0.04) possibly_damaging(0.465) TCGA-ER-A2NG-06 9 140946639 140946639 A C CACNA1B Missense_Mutation p.K1269T 0.29 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 9 23762229 23762229 C T ELAVL2 Missense_Mutation p.E2K 0.29 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-ER-A2NG-06 9 37780645 37780645 C G EXOSC3 3'UTR 0.33 TCGA-ER-A2NG-06 9 82333688 82333688 T C TLE4 Silent p.F464F 0.23 TCGA-ER-A2NG-06 9 97062951 97062951 G A ZNF169 Missense_Mutation p.E371K 0.17 deleterious(0.01) probably_damaging(0.909) TCGA-ER-A2NG-06 9 97321399 97321399 C T FBP2 Missense_Mutation p.E281K 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NG-06 X 106396512 106396512 G A NUP62CL Silent p.I140I 0.14 TCGA-ER-A2NG-06 X 107170226 107170226 G A MID2 Missense_Mutation p.D711N 0.13 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-ER-A2NG-06 X 107301308 107301308 C T VSIG1 Silent p.F30F 0.07 TCGA-ER-A2NG-06 X 107815042 107815042 G A COL4A5 Missense_Mutation p.G147E 0.16 unknown(0) TCGA-ER-A2NG-06 X 110653558 110653558 C T DCX Missense_Mutation p.M104I 0.27 tolerated(0.39) benign(0.004) TCGA-ER-A2NG-06 X 129154987 129154987 G A BCORL1 Missense_Mutation p.E1157K 0.11 probably_damaging(0.997) TCGA-ER-A2NG-06 X 131212601 131212601 G A FRMD7 Missense_Mutation p.P482S 0.27 deleterious(0) possibly_damaging(0.764) TCGA-ER-A2NG-06 X 134987465 134987465 G A SAGE1 Missense_Mutation p.R123Q 0.13 tolerated(0.88) benign(0.015) TCGA-ER-A2NG-06 X 135328301 135328301 T G MAP7D3 Missense_Mutation p.D59A 0.19 deleterious(0) probably_damaging(0.959) TCGA-ER-A2NG-06 X 135445670 135445670 G A GPR112 Missense_Mutation p.E2438K 0.30 deleterious(0.03) benign(0.113) TCGA-ER-A2NG-06 X 141291234 141291234 C T MAGEC2 Silent p.V180V 0.28 TCGA-ER-A2NG-06 X 148068951 148068951 G A AFF2 Silent p.G1226G 0.13 TCGA-ER-A2NG-06 X 148794847 148794847 C T MAGEA11 Silent p.L10L 0.11 TCGA-ER-A2NG-06 X 19390815 19390815 C T MAP3K15 Missense_Mutation p.E1022K 0.11 tolerated(0.06) benign(0.011) TCGA-ER-A2NG-06 X 26213268 26213268 G A MAGEB6 3'UTR 0.32 TCGA-ER-A2NG-06 X 29973427 29973427 G A IL1RAPL1 Silent p.L527L 0.25 TCGA-ER-A2NG-06 X 3240439 3240439 G A MXRA5 Missense_Mutation p.P1096L 0.11 tolerated(0.71) benign(0) TCGA-ER-A2NG-06 X 46433815 46433815 A T CHST7 Missense_Mutation p.Q150L 0.32 deleterious(0) probably_damaging(0.998) TCGA-ER-A2NG-06 X 48823417 48823417 G A KCND1 Silent p.V406V 0.40 TCGA-ER-A2NG-06 X 53223567 53223567 G A KDM5C Silent p.A1264A 0.42 TCGA-ER-A2NG-06 X 53458992 53458992 C T HSD17B10 Missense_Mutation p.G144R 0.08 tolerated(0.08) benign(0.065) TCGA-ER-A2NG-06 X 55116530 55116530 C T PAGE2 Missense_Mutation p.S26F 0.12 tolerated(0.06) possibly_damaging(0.837) TCGA-ER-A2NG-06 X 70514159 70514159 C T NONO Missense_Mutation p.A144V 0.16 deleterious(0) probably_damaging(0.916) TCGA-ER-A2NG-06 X 70823686 70823686 G A ACRC Missense_Mutation p.D187N 0.09 unknown(0) TCGA-ER-A2NG-06 X 73812410 73812410 G A RLIM Missense_Mutation p.S247L 0.10 deleterious(0.03) unknown(0) TCGA-ER-A2NG-06 X 76776955 76776955 C T ATRX Missense_Mutation p.E2333K 0.16 possibly_damaging(0.837) TCGA-ER-A2NG-06 X 96213115 96213115 G A DIAPH2 Missense_Mutation p.E635K 0.15 tolerated(0.06) probably_damaging(0.952) TCGA-ER-A2NH-06 10 15639291 15639291 C T ITGA8 Missense_Mutation p.R709Q 0.26 tolerated(0.24) benign(0.037) TCGA-ER-A2NH-06 10 50827795 50827795 C T CHAT Missense_Mutation p.P138S 0.15 tolerated(0.08) benign(0.23) TCGA-ER-A2NH-06 10 5442975 5442975 C T TUBAL3 Missense_Mutation p.E27K 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A2NH-06 10 55582378 55582378 G A PCDH15 Missense_Mutation p.S1705L 0.20 tolerated_low_confidence(0.13) benign(0.002) TCGA-ER-A2NH-06 10 7751049 7751049 C T ITIH2 Missense_Mutation p.A86V 0.25 tolerated(0.11) benign(0.437) TCGA-ER-A2NH-06 10 96602712 96602712 C A CYP2C19 Missense_Mutation p.D360E 0.28 deleterious(0) probably_damaging(0.934) TCGA-ER-A2NH-06 11 1021237 1021237 C T MUC6 Silent p.E1189E 0.30 TCGA-ER-A2NH-06 11 106558403 106558403 G A GUCY1A2 Missense_Mutation p.P722S 0.25 deleterious(0.04) benign(0.062) TCGA-ER-A2NH-06 11 1087492 1087492 C T MUC2 Silent p.S1081S 0.21 TCGA-ER-A2NH-06 11 19246901 19246901 G A E2F8 Missense_Mutation p.P763L 0.15 deleterious(0.02) probably_damaging(0.937) TCGA-ER-A2NH-06 11 4080625 4080625 C T STIM1 Silent p.L204L 0.25 TCGA-ER-A2NH-06 11 49179553 49179553 C T FOLH1 Missense_Mutation p.E495K 0.19 deleterious(0.01) benign(0.187) TCGA-ER-A2NH-06 11 50003708 50003708 G A OR4C12 Silent p.I110I 0.26 TCGA-ER-A2NH-06 11 50003858 50003858 G A OR4C12 Silent p.F60F 0.13 TCGA-ER-A2NH-06 11 5080816 5080816 G A OR52E2 Silent p.F14F 0.25 TCGA-ER-A2NH-06 11 55065456 55065456 C T TRIM51HP RNA 0.36 TCGA-ER-A2NH-06 11 5529751 5529751 G A UBQLN3 Silent p.L346L 0.32 TCGA-ER-A2NH-06 11 55418737 55418737 C T OR4S2 Missense_Mutation p.R120C 0.46 deleterious(0.01) benign(0.01) TCGA-ER-A2NH-06 11 55540913 55540913 C T OR5D13 5'Flank 0.21 TCGA-ER-A2NH-06 11 56086125 56086125 C T OR8K3 Missense_Mutation p.L115F 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A2NH-06 11 57254631 57254631 G A SLC43A1 Silent p.F490F 0.33 TCGA-ER-A2NH-06 11 5862438 5862438 G A OR52E6 Silent p.P230P 0.17 TCGA-ER-A2NH-06 11 5969480 5969480 G A OR56A3 Missense_Mutation p.E302K 0.21 deleterious(0.02) possibly_damaging(0.78) TCGA-ER-A2NH-06 11 62984908 62984908 C T SLC22A25 Silent p.L236L 0.22 TCGA-ER-A2NH-06 11 64676602 64676602 G A ATG2A Missense_Mutation p.P742L 0.32 deleterious(0) probably_damaging(0.945) TCGA-ER-A2NH-06 11 66190353 66190353 C T NPAS4 Silent p.F213F 0.27 TCGA-ER-A2NH-06 11 66258775 66258775 G C DPP3 Missense_Mutation p.R240P 0.21 tolerated(0.05) benign(0) TCGA-ER-A2NH-06 11 66807659 66807659 C T SYT12 Silent p.I202I 0.16 TCGA-ER-A2NH-06 11 6816325 6816325 G A OR6A2 Silent p.F205F 0.24 TCGA-ER-A2NH-06 11 70331862 70331862 G A SHANK2 Silent p.T1513T 0.16 TCGA-ER-A2NH-06 11 74876960 74876962 CTC TT SLCO2B1 Frame_Shift_Del p.S139Wfs*48 0.22 TCGA-ER-A2NH-06 11 7817955 7817955 G A OR5P2 Missense_Mutation p.P179S 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-ER-A2NH-06 12 103245469 103245469 G A PAH Missense_Mutation p.S303F 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NH-06 12 104063316 104063316 C T STAB2 Intron 0.23 TCGA-ER-A2NH-06 12 104092978 104092978 C T STAB2 Silent p.F1229F 0.14 TCGA-ER-A2NH-06 12 109201429 109201429 G A SSH1 Silent p.S237S 0.24 TCGA-ER-A2NH-06 12 109634839 109634839 C T ACACB Silent p.F836F 0.50 TCGA-ER-A2NH-06 12 111748436 111748436 C T CUX2 Missense_Mutation p.S617L 0.22 deleterious(0) probably_damaging(0.99) TCGA-ER-A2NH-06 12 117660592 117660592 G A NOS1 Silent p.T1335T 0.32 TCGA-ER-A2NH-06 12 120875936 120875936 G A COX6A1 Missense_Mutation p.V3I 0.21 tolerated(0.15) unknown(0) TCGA-ER-A2NH-06 12 122716937 122716937 G A VPS33A Silent p.F549F 0.21 TCGA-ER-A2NH-06 12 12279645 12279645 G A LRP6 Missense_Mutation p.S1431F 0.21 tolerated(0.08) possibly_damaging(0.883) TCGA-ER-A2NH-06 12 12397300 12397300 T G LRP6 Missense_Mutation p.E115D 0.26 tolerated(0.15) benign(0.129) TCGA-ER-A2NH-06 12 124285974 124285974 C T DNAH10 Missense_Mutation p.S752L 0.25 probably_damaging(0.99) TCGA-ER-A2NH-06 12 124496840 124496840 G A ZNF664 Nonsense_Mutation p.W50* 0.08 TCGA-ER-A2NH-06 12 13828684 13828684 C T GRIN2B Missense_Mutation p.E374K 0.24 deleterious(0) benign(0.019) TCGA-ER-A2NH-06 12 14772205 14772205 G A GUCY2C Missense_Mutation p.R939C 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 12 18747486 18747486 C T PIK3C2G Missense_Mutation p.S1316L 0.11 tolerated(0.07) benign(0.027) TCGA-ER-A2NH-06 12 33031217 33031217 G A PKP2 Silent p.I199I 0.21 TCGA-ER-A2NH-06 12 47471774 47471774 C T AMIGO2 Missense_Mutation p.E338K 0.19 tolerated(0.34) benign(0.009) TCGA-ER-A2NH-06 12 47471800 47471800 C T AMIGO2 Missense_Mutation p.R329K 0.21 tolerated(0.72) benign(0.009) TCGA-ER-A2NH-06 12 52827609 52827609 G A KRT75 Silent p.F160F 0.19 TCGA-ER-A2NH-06 12 52885512 52885512 G A KRT6A Silent p.F183F 0.25 TCGA-ER-A2NH-06 12 52886863 52886863 G A KRT6A Missense_Mutation p.S37F 0.25 deleterious(0) unknown(0) TCGA-ER-A2NH-06 12 52967381 52967381 A G KRT74 Missense_Mutation p.F61L 0.17 tolerated(0.96) benign(0.001) TCGA-ER-A2NH-06 12 54917697 54917697 C T NCKAP1L Missense_Mutation p.P705S 0.22 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 12 55367269 55367269 C T TESPA1 Silent p.Q66Q 0.32 TCGA-ER-A2NH-06 12 57627814 57627814 C T SHMT2 Silent p.F436F 0.37 TCGA-ER-A2NH-06 12 6859416 6859416 G A MLF2 Missense_Mutation p.S109F 0.13 deleterious(0) probably_damaging(0.99) TCGA-ER-A2NH-06 12 69746962 69746962 G A LYZ Missense_Mutation p.R137K 0.10 tolerated(0.85) benign(0.001) TCGA-ER-A2NH-06 12 7476100 7476100 G A ACSM4 Missense_Mutation p.E418K 0.24 deleterious(0.04) benign(0.155) TCGA-ER-A2NH-06 12 7639216 7639216 C T CD163 Silent p.G779G 0.19 TCGA-ER-A2NH-06 12 7640024 7640024 C T CD163 Missense_Mutation p.D661N 0.25 tolerated(0.66) benign(0.07) TCGA-ER-A2NH-06 12 85492217 85492217 C T LRRIQ1 Missense_Mutation p.P991L 0.24 tolerated(0.05) probably_damaging(1) TCGA-ER-A2NH-06 13 102359193 102359193 C T ITGBL1 Missense_Mutation p.T407M 0.10 deleterious(0.02) possibly_damaging(0.886) TCGA-ER-A2NH-06 13 108955898 108955898 C T TNFSF13B Nonsense_Mutation p.R231* 0.23 TCGA-ER-A2NH-06 13 109661278 109661278 C T MYO16 Missense_Mutation p.H804Y 0.25 tolerated(0.56) benign(0.006) TCGA-ER-A2NH-06 13 19751321 19751321 G A TUBA3C Missense_Mutation p.P268S 0.12 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ER-A2NH-06 13 20797525 20797525 C T GJB6 Missense_Mutation p.R32Q 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 13 28127488 28127488 G A LNX2 Silent p.S545S 0.16 TCGA-ER-A2NH-06 13 29004206 29004206 G A FLT1 Missense_Mutation p.P363S 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 13 37679314 37679314 G A CSNK1A1L Missense_Mutation p.S27F 0.23 deleterious_low_confidence(0) benign(0.023) TCGA-ER-A2NH-06 13 39358926 39358926 C T FREM2 Silent p.I2000I 0.24 TCGA-ER-A2NH-06 13 72147103 72147103 G A DACH1 Missense_Mutation p.P392S 0.24 possibly_damaging(0.885) TCGA-ER-A2NH-06 13 98637698 98637698 C T IPO5 Silent p.L83L 0.24 TCGA-ER-A2NH-06 14 106780807 106780807 G A IGHV4-28 Silent p.S19S 0.26 TCGA-ER-A2NH-06 14 20483005 20483005 C T OR4K14 Silent p.L116L 0.17 TCGA-ER-A2NH-06 14 20502702 20502702 G A OR4K13 Silent p.I72I 0.21 TCGA-ER-A2NH-06 14 20612776 20612776 G A OR4N5 Silent p.V294V 0.23 TCGA-ER-A2NH-06 14 22933244 22933244 G A TRDC Missense_Mutation p.G132E 0.37 deleterious(0.03) benign(0.383) TCGA-ER-A2NH-06 14 24619941 24619941 C T RNF31 Silent p.A444A 0.38 TCGA-ER-A2NH-06 14 55251330 55251330 C T SAMD4A Missense_Mutation p.A707V 0.19 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NH-06 14 55818782 55818782 C T FBXO34 Silent p.F558F 0.21 TCGA-ER-A2NH-06 14 58701160 58701160 G C ACTR10 Missense_Mutation p.G382A 0.25 deleterious(0.03) possibly_damaging(0.856) TCGA-ER-A2NH-06 14 62547953 62547953 G A SYT16 Missense_Mutation p.M465I 0.13 tolerated(0.15) benign(0.011) TCGA-ER-A2NH-06 14 65053991 65053991 G A PPP1R36 Missense_Mutation p.G264E 0.16 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NH-06 14 69257039 69257039 G A ZFP36L1 Silent p.A76A 0.26 TCGA-ER-A2NH-06 14 77944663 77944663 C T ISM2 Missense_Mutation p.E374K 0.35 tolerated(0.18) possibly_damaging(0.636) TCGA-ER-A2NH-06 14 90651108 90651108 G A KCNK13 Missense_Mutation p.D330N 0.27 tolerated(0.08) possibly_damaging(0.48) TCGA-ER-A2NH-06 14 92091200 92091200 C T CATSPERB Missense_Mutation p.A632T 0.16 tolerated(0.54) benign(0.001) TCGA-ER-A2NH-06 15 101016291 101016291 C T CERS3 Silent p.K203K 0.22 TCGA-ER-A2NH-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.07 deleterious(0) probably_damaging(0.931) TCGA-ER-A2NH-06 15 22945140 22945140 G A CYFIP1 Nonsense_Mutation p.W404* 0.21 TCGA-ER-A2NH-06 15 35044924 35044924 C T GJD2 Missense_Mutation p.E241K 0.21 deleterious(0) probably_damaging(0.964) TCGA-ER-A2NH-06 15 40094226 40094226 C T GPR176 Missense_Mutation p.V219M 0.19 deleterious(0) possibly_damaging(0.547) TCGA-ER-A2NH-06 15 41275119 41275119 G A INO80 Missense_Mutation p.A1465V 0.31 deleterious(0.01) benign(0.003) TCGA-ER-A2NH-06 15 42453930 42453930 G A VPS39 Silent p.I834I 0.19 TCGA-ER-A2NH-06 15 45392980 45392980 G A DUOX2 Missense_Mutation p.P993L 0.11 tolerated(0.15) benign(0.002) TCGA-ER-A2NH-06 15 54799360 54799360 G A UNC13C Missense_Mutation p.D1783N 0.22 tolerated_low_confidence(0.07) benign(0.138) TCGA-ER-A2NH-06 15 65456425 65456425 G A CLPX Silent p.I205I 0.32 TCGA-ER-A2NH-06 15 85451966 85451966 G A SLC28A1 Silent p.T245T 0.22 TCGA-ER-A2NH-06 15 89400917 89400917 G A ACAN Missense_Mutation p.D1701N 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A2NH-06 15 93609255 93609255 C G RGMA Intron 0.21 TCGA-ER-A2NH-06 16 20448487 20448487 G A ACSM5 Silent p.V474V 0.22 TCGA-ER-A2NH-06 16 21048171 21048171 C T DNAH3 Splice_Site p.X1651_splice 0.08 TCGA-ER-A2NH-06 16 21968575 21968575 T C UQCRC2 Missense_Mutation p.V18A 0.23 tolerated(0.82) benign(0.015) TCGA-ER-A2NH-06 16 23695351 23695351 C T PLK1 Missense_Mutation p.S326L 0.26 tolerated(0.07) benign(0.007) TCGA-ER-A2NH-06 16 28607162 28607162 G A SULT1A2 Silent p.P30P 0.32 TCGA-ER-A2NH-06 16 30731619 30731619 C T SRCAP Missense_Mutation p.P985L 0.25 unknown(0) TCGA-ER-A2NH-06 16 48226507 48226507 C T ABCC11 Missense_Mutation p.G877E 0.26 deleterious(0.02) probably_damaging(0.952) TCGA-ER-A2NH-06 16 50342697 50342697 C T ADCY7 Silent p.I685I 0.16 TCGA-ER-A2NH-06 16 51173383 51173383 G A SALL1 Missense_Mutation p.P917L 0.35 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NH-06 16 51173738 51173738 G A SALL1 Missense_Mutation p.P799S 0.24 tolerated(0.06) benign(0.283) TCGA-ER-A2NH-06 16 57060564 57060564 C T NLRC5 Missense_Mutation p.S570F 0.22 deleterious(0) possibly_damaging(0.787) TCGA-ER-A2NH-06 16 61761011 61761011 C T CDH8 Missense_Mutation p.G508E 0.19 deleterious(0.03) probably_damaging(0.986) TCGA-ER-A2NH-06 16 66426376 66426376 G A CDH5 Intron 0.31 TCGA-ER-A2NH-06 16 67029701 67029701 G A CES4A Missense_Mutation p.G77R 0.16 tolerated(0.34) possibly_damaging(0.479) TCGA-ER-A2NH-06 16 74709293 74709293 G A MLKL Silent p.I400I 0.13 TCGA-ER-A2NH-06 16 81295858 81295858 C T BCMO1 Silent p.I147I 0.32 TCGA-ER-A2NH-06 17 12656204 12656204 G A MYOCD Nonsense_Mutation p.W533* 0.21 TCGA-ER-A2NH-06 17 19699574 19699574 G A ULK2 Missense_Mutation p.P611S 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A2NH-06 17 20805643 20805643 G A RP11-344E13.3 RNA 0.18 TCGA-ER-A2NH-06 17 27020796 27020796 T C SUPT6H Missense_Mutation p.F1239S 0.31 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NH-06 17 27020797 27020797 C T SUPT6H Silent p.F1239F 0.32 TCGA-ER-A2NH-06 17 33513548 33513548 G A UNC45B Missense_Mutation p.M922I 0.11 tolerated(0.13) benign(0.004) TCGA-ER-A2NH-06 17 33767892 33767892 G A SLFN13 Missense_Mutation p.P806S 0.26 tolerated(0.23) benign(0.028) TCGA-ER-A2NH-06 17 34192270 34192270 C T C17orf66 Missense_Mutation p.R90Q 0.20 tolerated(0.41) benign(0.022) TCGA-ER-A2NH-06 17 3657180 3657180 G A ITGAE Missense_Mutation p.S475F 0.18 tolerated(0.22) benign(0.048) TCGA-ER-A2NH-06 17 37922110 37922110 C T IKZF3 Missense_Mutation p.R488Q 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-ER-A2NH-06 17 38418887 38418887 G A WIPF2 Missense_Mutation p.G103S 0.19 tolerated(0.77) benign(0) TCGA-ER-A2NH-06 17 40839796 40839796 C T CNTNAP1 Missense_Mutation p.P368L 0.20 tolerated(0.09) benign(0.169) TCGA-ER-A2NH-06 17 43535765 43535765 G A PLEKHM1 Missense_Mutation p.P450L 0.25 deleterious(0.01) possibly_damaging(0.78) TCGA-ER-A2NH-06 17 4857004 4857004 C T ENO3 Intron 0.23 TCGA-ER-A2NH-06 17 50008440 50008440 C T CA10 Silent p.G63G 0.29 TCGA-ER-A2NH-06 17 59668251 59668251 C T NACA2 Nonsense_Mutation p.W97* 0.20 TCGA-ER-A2NH-06 17 62796684 62796684 G A PLEKHM1P RNA 0.14 TCGA-ER-A2NH-06 17 71197605 71197605 G A COG1 Missense_Mutation p.V547I 0.23 tolerated(0.74) benign(0.001) TCGA-ER-A2NH-06 17 72937810 72937810 C T OTOP3 Silent p.S132S 0.12 TCGA-ER-A2NH-06 18 28720210 28720210 C T DSC1 Missense_Mutation p.E439K 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NH-06 18 28934929 28934929 G A DSG1 Missense_Mutation p.E924K 0.25 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NH-06 18 43212336 43212336 C T SLC14A2 Silent p.L181L 0.13 TCGA-ER-A2NH-06 18 43685196 43685196 C T HAUS1 Missense_Mutation p.P23S 0.19 deleterious(0.03) benign(0.079) TCGA-ER-A2NH-06 18 57103247 57103247 G A CCBE1 Nonsense_Mutation p.Q372* 0.18 TCGA-ER-A2NH-06 18 6243335 6243335 C T L3MBTL4 Missense_Mutation p.G140R 0.23 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 18 9814067 9814067 C T RAB31 Silent p.I84I 0.17 TCGA-ER-A2NH-06 19 1612289 1612289 A G TCF3 Intron 0.18 TCGA-ER-A2NH-06 19 18119101 18119101 G A ARRDC2 5'UTR 0.36 TCGA-ER-A2NH-06 19 3639001 3639001 G A PIP5K1C Missense_Mutation p.P601S 0.13 tolerated_low_confidence(0.65) benign(0.002) TCGA-ER-A2NH-06 19 36940898 36940898 C G ZNF566 Missense_Mutation p.E81Q 0.23 tolerated(0.12) benign(0.007) TCGA-ER-A2NH-06 19 40433354 40433354 G A FCGBP Silent p.L305L 0.24 TCGA-ER-A2NH-06 19 42563645 42563645 G A GRIK5 Silent p.F181F 0.42 TCGA-ER-A2NH-06 19 44770435 44770435 C T ZNF233 Nonsense_Mutation p.Q34* 0.29 TCGA-ER-A2NH-06 19 45860600 45860600 C T ERCC2 Silent p.K469K 0.33 TCGA-ER-A2NH-06 19 45924602 45924602 G A ERCC1 Missense_Mutation p.S52L 0.30 tolerated(0.07) benign(0.004) TCGA-ER-A2NH-06 19 48543898 48543898 C T CABP5 Missense_Mutation p.E68K 0.24 deleterious(0) probably_damaging(0.998) TCGA-ER-A2NH-06 19 50453419 50453419 C T SIGLEC11 Silent p.G635G 0.44 TCGA-ER-A2NH-06 19 51517934 51517934 G A KLK10 3'UTR 0.50 TCGA-ER-A2NH-06 19 51918165 51918165 G A SIGLEC10 Missense_Mutation p.H510Y 0.35 tolerated(0.16) benign(0.393) TCGA-ER-A2NH-06 19 55253453 55253453 C T KIR2DL3 Missense_Mutation p.A33V 0.55 tolerated(0.06) probably_damaging(0.993) TCGA-ER-A2NH-06 19 56499320 56499320 C T NLRP8 3'UTR 0.35 TCGA-ER-A2NH-06 19 58551914 58551914 T G ZSCAN1 Splice_Site p.X155_splice 0.27 TCGA-ER-A2NH-06 19 6685030 6685030 C T C3 Nonsense_Mutation p.W1313* 0.16 TCGA-ER-A2NH-06 19 7570315 7570315 G A C19orf45 Silent p.R296R 0.44 TCGA-ER-A2NH-06 19 7570316 7570316 G A C19orf45 Missense_Mutation p.E297K 0.42 deleterious(0.02) possibly_damaging(0.515) TCGA-ER-A2NH-06 19 757922 757922 C T MISP Missense_Mutation p.P326S 0.43 tolerated(0.06) possibly_damaging(0.744) TCGA-ER-A2NH-06 19 7975960 7975960 C T MAP2K7 Silent p.I257I 0.33 TCGA-ER-A2NH-06 19 8661948 8661948 G A ADAMTS10 Silent p.I321I 0.27 TCGA-ER-A2NH-06 19 8809082 8809082 C T ACTL9 5'UTR 0.38 TCGA-ER-A2NH-06 19 9028320 9028320 C T MUC16 Missense_Mutation p.D12158N 0.27 possibly_damaging(0.679) TCGA-ER-A2NH-06 19 9069926 9069926 G A MUC16 Silent p.S5840S 0.26 TCGA-ER-A2NH-06 1 108303444 108303444 G A VAV3 Missense_Mutation p.P327S 0.12 deleterious(0.01) possibly_damaging(0.451) TCGA-ER-A2NH-06 1 110203965 110203965 A C GSTM4 3'UTR 0.33 TCGA-ER-A2NH-06 1 110203966 110203966 C T GSTM4 3'UTR 0.33 TCGA-ER-A2NH-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.77 tolerated(0.06) benign(0.006) TCGA-ER-A2NH-06 1 115527431 115527431 G A SYCP1 Missense_Mutation p.R882K 0.05 tolerated(0.14) benign(0.037) TCGA-ER-A2NH-06 1 12921271 12921271 C T PRAMEF2 Silent p.L354L 0.32 TCGA-ER-A2NH-06 1 152784820 152784820 G A LCE1B 5'UTR 0.27 TCGA-ER-A2NH-06 1 154901531 154901531 T G PMVK Missense_Mutation p.K94T 0.26 tolerated(0.58) benign(0.064) TCGA-ER-A2NH-06 1 154917489 154917489 G A PBXIP1 3'UTR 0.29 TCGA-ER-A2NH-06 1 157556060 157556060 C T FCRL4 Missense_Mutation p.E345K 0.17 tolerated(0.23) possibly_damaging(0.698) TCGA-ER-A2NH-06 1 157771259 157771259 C T FCRL1 Missense_Mutation p.R332K 0.22 tolerated(0.38) benign(0.065) TCGA-ER-A2NH-06 1 158226832 158226832 C T CD1A Silent p.G287G 0.15 TCGA-ER-A2NH-06 1 158226833 158226833 C T CD1A Nonsense_Mutation p.Q288* 0.16 TCGA-ER-A2NH-06 1 158576270 158576270 C T OR10Z1 Silent p.F14F 0.19 TCGA-ER-A2NH-06 1 158815426 158815426 C T MNDA Missense_Mutation p.P207L 0.24 tolerated(1) benign(0) TCGA-ER-A2NH-06 1 159779934 159779934 C T FCRL6 Missense_Mutation p.P313S 0.19 tolerated(0.77) benign(0.023) TCGA-ER-A2NH-06 1 160607290 160607290 G A SLAMF1 Missense_Mutation p.L36F 0.29 tolerated(0.24) benign(0.016) TCGA-ER-A2NH-06 1 169697037 169697037 C T SELE Silent p.P437P 0.17 TCGA-ER-A2NH-06 1 172634797 172634797 G A FASLG Missense_Mutation p.E163K 0.31 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NH-06 1 173020072 173020072 C T TNFSF18 Missense_Mutation p.E11K 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.855) TCGA-ER-A2NH-06 1 173176384 173176384 C T TNFSF4 5'UTR 0.20 TCGA-ER-A2NH-06 1 176740149 176740149 C T PAPPA2 Silent p.L1516L 0.14 TCGA-ER-A2NH-06 1 177250323 177250323 C T BRINP2 Missense_Mutation p.P671S 0.19 tolerated(0.07) benign(0.324) TCGA-ER-A2NH-06 1 177250324 177250324 C T BRINP2 Missense_Mutation p.P671L 0.20 deleterious(0.01) possibly_damaging(0.601) TCGA-ER-A2NH-06 1 177250761 177250761 C T BRINP2 3'UTR 0.29 TCGA-ER-A2NH-06 1 182638806 182638806 A G RGS8 Intron 0.21 TCGA-ER-A2NH-06 1 183196718 183196718 G A LAMC2 Missense_Mutation p.D452N 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-ER-A2NH-06 1 196887426 196887426 G A CFHR4 Missense_Mutation p.G542R 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A2NH-06 1 197029651 197029651 C T F13B Missense_Mutation p.R217K 0.10 tolerated(0.4) benign(0.033) TCGA-ER-A2NH-06 1 197070021 197070021 A G ASPM Missense_Mutation p.V2787A 0.22 tolerated(0.46) benign(0.103) TCGA-ER-A2NH-06 1 197398659 197398659 G A CRB1 Silent p.G919G 0.14 TCGA-ER-A2NH-06 1 201052414 201052414 C T CACNA1S Nonsense_Mutation p.W423* 0.22 TCGA-ER-A2NH-06 1 203024755 203024755 C T PPFIA4 Silent p.S169S 0.12 TCGA-ER-A2NH-06 1 205138706 205138706 A G DSTYK Silent p.L303L 0.12 TCGA-ER-A2NH-06 1 206770521 206770521 T C EIF2D Silent p.L439L 0.19 TCGA-ER-A2NH-06 1 207648331 207648331 G A CR2 Missense_Mutation p.G829E 0.09 deleterious(0) probably_damaging(0.996) TCGA-ER-A2NH-06 1 210857430 210857430 C T KCNH1 Missense_Mutation p.M721I 0.24 tolerated(0.08) benign(0.028) TCGA-ER-A2NH-06 1 215781439 215781439 C T KCTD3 Missense_Mutation p.P464S 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-ER-A2NH-06 1 222803275 222803275 C T MIA3 Missense_Mutation p.H905Y 0.14 tolerated(1) benign(0.107) TCGA-ER-A2NH-06 1 223285504 223285504 C T TLR5 Silent p.V290V 0.13 TCGA-ER-A2NH-06 1 225155175 225155175 C A DNAH14 Silent p.R181R 0.33 TCGA-ER-A2NH-06 1 225591097 225591097 G A LBR Missense_Mutation p.R586C 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 1 233152864 233152864 G A PCNXL2 Missense_Mutation p.L1548F 0.20 tolerated(0.07) benign(0.004) TCGA-ER-A2NH-06 1 233296076 233296076 G A PCNXL2 Missense_Mutation p.S1157L 0.18 deleterious(0) benign(0.234) TCGA-ER-A2NH-06 1 237756850 237756850 C T RYR2 Silent p.F1450F 0.14 TCGA-ER-A2NH-06 1 240370352 240370352 C T FMN2 Missense_Mutation p.S747F 0.33 unknown(0) TCGA-ER-A2NH-06 1 240966273 240966273 C T RGS7 Missense_Mutation p.M430I 0.15 deleterious(0) probably_damaging(0.951) TCGA-ER-A2NH-06 1 248059274 248059274 C T OR2W3 Missense_Mutation p.P129L 0.25 deleterious(0) probably_damaging(0.931) TCGA-ER-A2NH-06 1 248487835 248487835 G A OR2M7 Silent p.F12F 0.18 TCGA-ER-A2NH-06 1 44437122 44437122 C T DPH2 Missense_Mutation p.P183L 0.22 tolerated(0.14) possibly_damaging(0.474) TCGA-ER-A2NH-06 1 47282763 47282763 G A CYP4B1 Missense_Mutation p.E373K 0.20 deleterious(0) probably_damaging(0.95) TCGA-ER-A2NH-06 1 4832501 4832501 G A AJAP1 Missense_Mutation p.C360Y 0.42 deleterious(0) possibly_damaging(0.588) TCGA-ER-A2NH-06 1 9009336 9009336 G A CA6 Missense_Mutation p.E32K 0.41 deleterious(0.04) possibly_damaging(0.474) TCGA-ER-A2NH-06 1 92446461 92446461 G A BRDT Silent p.R492R 0.24 TCGA-ER-A2NH-06 20 13279725 13279725 C T ISM1 Silent p.F338F 0.20 TCGA-ER-A2NH-06 20 29993947 29993947 G A DEFB121 Silent p.L3L 0.18 TCGA-ER-A2NH-06 20 34572599 34572599 G A CNBD2 Missense_Mutation p.M205I 0.21 deleterious(0.01) benign(0.281) TCGA-ER-A2NH-06 20 40730818 40730818 G A PTPRT Silent p.F1220F 0.29 TCGA-ER-A2NH-06 20 41076937 41076937 C T PTPRT Missense_Mutation p.G495R 0.14 tolerated(0.33) benign(0.2) TCGA-ER-A2NH-06 20 60847231 60847231 C T OSBPL2 Silent p.F103F 0.16 TCGA-ER-A2NH-06 21 27327992 27327992 G A APP Silent p.F512F 0.27 TCGA-ER-A2NH-06 21 41414514 41414514 C T DSCAM Missense_Mutation p.E1824K 0.23 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NH-06 21 43504239 43504239 C T UMODL1 Missense_Mutation p.P122L 0.24 deleterious(0) benign(0.02) TCGA-ER-A2NH-06 21 43862599 43862599 A G UBASH3A Silent p.E508E 0.18 TCGA-ER-A2NH-06 21 45815418 45815418 G A TRPM2 Missense_Mutation p.G639E 0.25 tolerated(1) benign(0.002) TCGA-ER-A2NH-06 21 46032225 46032225 C T KRTAP10-8 Missense_Mutation p.P70S 0.12 tolerated(0.31) possibly_damaging(0.876) TCGA-ER-A2NH-06 22 16287371 16287371 A G POTEH Missense_Mutation p.V172A 0.16 deleterious(0.04) benign(0.314) TCGA-ER-A2NH-06 22 26736566 26736566 G A SEZ6L Missense_Mutation p.G727E 0.25 deleterious(0.01) possibly_damaging(0.855) TCGA-ER-A2NH-06 22 31501034 31501034 G A SELM Silent p.P120P 0.31 TCGA-ER-A2NH-06 22 36055516 36055516 G A APOL6 Missense_Mutation p.G302E 0.16 tolerated(0.08) benign(0.084) TCGA-ER-A2NH-06 22 40068313 40068313 G A CACNA1I Missense_Mutation p.R1550Q 0.21 deleterious(0) possibly_damaging(0.553) TCGA-ER-A2NH-06 2 106721260 106721260 G A UXS1 Nonsense_Mutation p.Q305* 0.18 TCGA-ER-A2NH-06 2 108626960 108626960 C T SLC5A7 Silent p.Y462Y 0.19 TCGA-ER-A2NH-06 2 119739012 119739012 G A MARCO Missense_Mutation p.G265E 0.33 deleterious(0) probably_damaging(0.993) TCGA-ER-A2NH-06 2 121047207 121047207 C T RALB Silent p.V125V 0.22 TCGA-ER-A2NH-06 2 135621048 135621048 C T ACMSD Silent p.F111F 0.23 TCGA-ER-A2NH-06 2 152404158 152404158 G A NEB Missense_Mutation p.A6751V 0.24 probably_damaging(0.973) TCGA-ER-A2NH-06 2 153527837 153527837 G A PRPF40A Missense_Mutation p.R477C 0.20 deleterious(0) possibly_damaging(0.898) TCGA-ER-A2NH-06 2 162894862 162894862 G A DPP4 Missense_Mutation p.T188M 0.25 deleterious(0) possibly_damaging(0.685) TCGA-ER-A2NH-06 2 166179918 166179918 G A SCN2A Missense_Mutation p.G642R 0.18 tolerated(0.06) probably_damaging(1) TCGA-ER-A2NH-06 2 166179919 166179919 G A SCN2A Missense_Mutation p.G642E 0.21 tolerated(0.07) probably_damaging(1) TCGA-ER-A2NH-06 2 167055825 167055825 C T SCN9A Missense_Mutation p.S1764N 0.20 deleterious(0.02) benign(0.336) TCGA-ER-A2NH-06 2 168105599 168105599 C T XIRP2 Missense_Mutation p.S2566F 0.22 benign(0.117) TCGA-ER-A2NH-06 2 170097627 170097627 G C LRP2 Missense_Mutation p.P1306A 0.30 benign(0.32) TCGA-ER-A2NH-06 2 179613737 179613737 C T TTN Intron 0.15 TCGA-ER-A2NH-06 2 179614337 179614337 C T TTN Intron 0.16 TCGA-ER-A2NH-06 2 179648854 179648854 G A TTN Silent p.I906I 0.18 TCGA-ER-A2NH-06 2 187703815 187703815 C T ZSWIM2 Missense_Mutation p.G122E 0.23 tolerated(0.99) benign(0.007) TCGA-ER-A2NH-06 2 203589649 203589649 G C FAM117B Missense_Mutation p.A255P 0.21 deleterious(0.03) probably_damaging(0.981) TCGA-ER-A2NH-06 2 203589651 203589651 A C FAM117B Silent p.A255A 0.21 TCGA-ER-A2NH-06 2 207432017 207432017 G A ADAM23 Missense_Mutation p.G489R 0.25 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 2 209309571 209309571 C T PTH2R Missense_Mutation p.S271L 0.18 deleterious(0.02) probably_damaging(0.961) TCGA-ER-A2NH-06 2 211525297 211525297 T A CPS1 Missense_Mutation p.V1288E 0.27 deleterious(0) probably_damaging(0.923) TCGA-ER-A2NH-06 2 220166879 220166879 G A PTPRN Missense_Mutation p.A325V 0.15 tolerated(0.28) benign(0.028) TCGA-ER-A2NH-06 2 220333434 220333434 C T SPEG Missense_Mutation p.P1093S 0.17 probably_damaging(1) TCGA-ER-A2NH-06 2 24533444 24533444 G A ITSN2 Missense_Mutation p.P157L 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A2NH-06 2 33749032 33749032 C T RASGRP3 Silent p.I201I 0.23 TCGA-ER-A2NH-06 2 43452068 43452068 G A ZFP36L2 Missense_Mutation p.S292F 0.22 tolerated_low_confidence(0.71) unknown(0) TCGA-ER-A2NH-06 2 46770907 46770907 G C RHOQ Missense_Mutation p.G53R 0.20 deleterious(0.02) probably_damaging(0.941) TCGA-ER-A2NH-06 2 50724774 50724774 G A NRXN1 Missense_Mutation p.S899F 0.24 deleterious(0) probably_damaging(0.969) TCGA-ER-A2NH-06 2 71058321 71058321 G A CD207 Missense_Mutation p.P283S 0.26 deleterious(0.04) benign(0.142) TCGA-ER-A2NH-06 2 74044065 74044065 C T C2orf78 Silent p.F905F 0.33 TCGA-ER-A2NH-06 2 74452135 74452135 G A SLC4A5 Intron 0.29 TCGA-ER-A2NH-06 2 85617631 85617631 G A ELMOD3 3'UTR 0.28 TCGA-ER-A2NH-06 2 85892448 85892448 C T SFTPB Silent p.R224R 0.16 TCGA-ER-A2NH-06 2 89986949 89986949 C T IGKV2D-29 Missense_Mutation p.S77F 0.15 deleterious(0.02) possibly_damaging(0.477) TCGA-ER-A2NH-06 3 120941953 120941953 G A STXBP5L Missense_Mutation p.D354N 0.28 deleterious(0.02) possibly_damaging(0.902) TCGA-ER-A2NH-06 3 121345715 121345715 C T FBXO40 Silent p.V696V 0.12 TCGA-ER-A2NH-06 3 121410904 121410904 T C GOLGB1 Missense_Mutation p.N2436S 0.17 benign(0.209) TCGA-ER-A2NH-06 3 12183495 12183495 C T SYN2 Intron 0.23 TCGA-ER-A2NH-06 3 122002676 122002676 C T CASR Silent p.F635F 0.22 TCGA-ER-A2NH-06 3 133497452 133497452 C T TF Silent p.F695F 0.14 TCGA-ER-A2NH-06 3 133664076 133664076 G A SLCO2A1 Missense_Mutation p.P442S 0.15 tolerated(0.29) benign(0.007) TCGA-ER-A2NH-06 3 161063940 161063940 G A SPTSSB Missense_Mutation p.R58C 0.15 deleterious(0.05) probably_damaging(0.991) TCGA-ER-A2NH-06 3 184062315 184062315 C T FAM131A Missense_Mutation p.L220F 0.16 tolerated(0.08) probably_damaging(0.986) TCGA-ER-A2NH-06 3 186435389 186435389 G A KNG1 Missense_Mutation p.E20K 0.22 deleterious(0.04) benign(0.307) TCGA-ER-A2NH-06 3 2908630 2908630 G A CNTN4 Missense_Mutation p.D217N 0.19 deleterious(0) benign(0.24) TCGA-ER-A2NH-06 3 38888526 38888526 G A SCN11A Missense_Mutation p.R1679C 0.20 deleterious(0) probably_damaging(0.923) TCGA-ER-A2NH-06 3 43753208 43753208 C T ABHD5 Missense_Mutation p.H172Y 0.12 deleterious(0) possibly_damaging(0.459) TCGA-ER-A2NH-06 3 50290554 50290554 C T GNAI2 Silent p.D134D 0.12 TCGA-ER-A2NH-06 3 52526445 52526445 C T NISCH Missense_Mutation p.R1488C 0.18 deleterious(0) probably_damaging(0.973) TCGA-ER-A2NH-06 3 52547745 52547745 C T STAB1 Nonsense_Mutation p.Q1095* 0.13 TCGA-ER-A2NH-06 3 74350824 74350824 G A CNTN3 Missense_Mutation p.S640F 0.18 deleterious(0.01) probably_damaging(1) TCGA-ER-A2NH-06 3 7721964 7721964 G A GRM7 Missense_Mutation p.E894K 0.15 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-ER-A2NH-06 3 86028334 86028334 C T CADM2 Missense_Mutation p.P324S 0.20 tolerated(0.26) benign(0.002) TCGA-ER-A2NH-06 3 9719742 9719742 G A MTMR14 Silent p.Q299Q 0.15 TCGA-ER-A2NH-06 3 9785987 9785987 G A BRPF1 Silent p.P905P 0.24 TCGA-ER-A2NH-06 3 9959561 9959561 C T IL17RC Intron 0.27 TCGA-ER-A2NH-06 4 138451778 138451778 C T PCDH18 Missense_Mutation p.A489T 0.19 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 4 15444230 15444230 G A C1QTNF7 Missense_Mutation p.G233E 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 4 158242620 158242620 C T GRIA2 Nonsense_Mutation p.Q251* 0.26 TCGA-ER-A2NH-06 4 166996152 166996152 G A TLL1 Missense_Mutation p.E771K 0.24 deleterious(0) benign(0.184) TCGA-ER-A2NH-06 4 169315758 169315758 C T DDX60L Missense_Mutation p.R1223K 0.32 tolerated(1) benign(0) TCGA-ER-A2NH-06 4 175899220 175899220 G A ADAM29 3'UTR 0.25 TCGA-ER-A2NH-06 4 46067417 46067417 C T GABRG1 Missense_Mutation p.R169Q 0.22 deleterious(0) benign(0.252) TCGA-ER-A2NH-06 4 69811058 69811058 C T UGT2A3 Missense_Mutation p.G277E 0.24 deleterious(0) probably_damaging(0.986) TCGA-ER-A2NH-06 4 87696665 87696665 C T PTPN13 Silent p.S1922S 0.40 TCGA-ER-A2NH-06 4 89653209 89653209 T A FAM13A Missense_Mutation p.K929N 0.32 tolerated(0.22) benign(0.008) TCGA-ER-A2NH-06 4 94436421 94436421 C T GRID2 Silent p.D684D 0.25 TCGA-ER-A2NH-06 5 101813566 101813566 C T SLCO6A1 Splice_Site p.X206_splice 0.22 TCGA-ER-A2NH-06 5 126755745 126755745 G A MEGF10 Missense_Mutation p.G479E 0.25 deleterious(0.04) benign(0.023) TCGA-ER-A2NH-06 5 127800563 127800563 C T FBN2 Missense_Mutation p.G227E 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-ER-A2NH-06 5 132238168 132238168 G A AFF4 Missense_Mutation p.P367S 0.35 tolerated(0.2) benign(0.026) TCGA-ER-A2NH-06 5 13814881 13814881 C T DNAH5 Missense_Mutation p.D2355N 0.33 possibly_damaging(0.822) TCGA-ER-A2NH-06 5 147498040 147498040 G C SPINK5 Missense_Mutation p.R718T 0.20 deleterious(0.02) benign(0.017) TCGA-ER-A2NH-06 5 150090912 150090912 G A DCTN4 Silent p.F401F 0.39 TCGA-ER-A2NH-06 5 156184689 156184689 C T SGCD Silent p.L225L 0.16 TCGA-ER-A2NH-06 5 180377220 180377220 C T BTNL8 Silent p.P393P 0.44 TCGA-ER-A2NH-06 5 35867477 35867477 G A IL7R Silent p.K97K 0.29 TCGA-ER-A2NH-06 5 38919026 38919026 C T OSMR Missense_Mutation p.L483F 0.26 tolerated(0.72) benign(0.016) TCGA-ER-A2NH-06 5 41186273 41186273 G A C6 Missense_Mutation p.L209F 0.11 deleterious(0) probably_damaging(0.974) TCGA-ER-A2NH-06 5 5209252 5209252 G A ADAMTS16 Missense_Mutation p.E500K 0.25 deleterious(0.01) possibly_damaging(0.642) TCGA-ER-A2NH-06 5 73931223 73931223 G A ENC1 Missense_Mutation p.T363I 0.23 deleterious(0) possibly_damaging(0.782) TCGA-ER-A2NH-06 5 76633115 76633115 G A PDE8B Missense_Mutation p.E258K 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-ER-A2NH-06 6 100390896 100390896 C T MCHR2 Silent p.S172S 0.15 TCGA-ER-A2NH-06 6 108497842 108497842 C T NR2E1 Missense_Mutation p.T132I 0.32 tolerated(0.16) benign(0.165) TCGA-ER-A2NH-06 6 10898272 10898272 G A SYCP2L Missense_Mutation p.G122E 0.33 tolerated(0.52) benign(0.045) TCGA-ER-A2NH-06 6 112393144 112393144 C A TUBE1 Missense_Mutation p.M410I 0.27 tolerated(0.24) benign(0.001) TCGA-ER-A2NH-06 6 116938278 116938278 G A RSPH4A Silent p.R164R 0.27 TCGA-ER-A2NH-06 6 117114181 117114181 C T GPRC6A Silent p.V635V 0.18 TCGA-ER-A2NH-06 6 117237415 117237415 C T RFX6 Missense_Mutation p.P304S 0.10 tolerated(0.16) benign(0.223) TCGA-ER-A2NH-06 6 119345462 119345462 C T FAM184A Missense_Mutation p.E226K 0.15 deleterious(0) possibly_damaging(0.782) TCGA-ER-A2NH-06 6 128294823 128294823 C T PTPRK Silent p.T1379T 0.23 TCGA-ER-A2NH-06 6 132910798 132910798 C T TAAR5 Missense_Mutation p.E10K 0.22 tolerated(0.12) benign(0.002) TCGA-ER-A2NH-06 6 133834097 133834097 G A EYA4 Silent p.G474G 0.18 TCGA-ER-A2NH-06 6 136888793 136888793 C T MAP3K5 Missense_Mutation p.G1246E 0.19 tolerated(0.1) benign(0.053) TCGA-ER-A2NH-06 6 152832162 152832162 A T SYNE1 Missense_Mutation p.I129N 0.23 probably_damaging(0.998) TCGA-ER-A2NH-06 6 161990439 161990439 G A PARK2 Missense_Mutation p.P294L 0.22 deleterious(0.03) benign(0.393) TCGA-ER-A2NH-06 6 28473580 28473580 C T GPX6 Splice_Site p.X120_splice 0.17 TCGA-ER-A2NH-06 6 28542979 28542979 G A SCAND3 Silent p.F501F 0.19 TCGA-ER-A2NH-06 6 29080214 29080214 G A OR2J3 Missense_Mutation p.E183K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A2NH-06 6 29627155 29627155 G A MOG Missense_Mutation p.E50K 0.16 tolerated(0.19) probably_damaging(0.983) TCGA-ER-A2NH-06 6 31084733 31084733 G A CDSN Missense_Mutation p.S220L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-ER-A2NH-06 6 35912096 35912096 T C SLC26A8 Missense_Mutation p.M832V 0.15 tolerated(0.28) benign(0.004) TCGA-ER-A2NH-06 6 41166074 41166074 A C TREML2 Missense_Mutation p.V50G 0.18 deleterious(0.02) benign(0.309) TCGA-ER-A2NH-06 6 41557741 41557741 C T FOXP4 Missense_Mutation p.T397I 0.15 tolerated(0.07) benign(0.004) TCGA-ER-A2NH-06 6 43746213 43746213 C T VEGFA Missense_Mutation p.P291L 0.22 tolerated(0.06) benign(0.044) TCGA-ER-A2NH-06 6 54254753 54254753 C T TINAG 3'UTR 0.11 TCGA-ER-A2NH-06 6 62611258 62611258 G A KHDRBS2 Missense_Mutation p.R168C 0.22 tolerated(0.18) benign(0.139) TCGA-ER-A2NH-06 6 70071226 70071226 C T BAI3 Missense_Mutation p.P1354L 0.16 tolerated(0.71) benign(0.002) TCGA-ER-A2NH-06 6 75801104 75801104 C T COL12A1 Missense_Mutation p.G2896E 0.12 probably_damaging(1) TCGA-ER-A2NH-06 6 75839869 75839869 C T COL12A1 Missense_Mutation p.G2050R 0.15 probably_damaging(1) TCGA-ER-A2NH-06 6 84117513 84117513 G A ME1 Silent p.F62F 0.20 TCGA-ER-A2NH-06 6 87725331 87725331 C T HTR1E Silent p.F93F 0.13 TCGA-ER-A2NH-06 6 88224096 88224096 T A RARS2 3'UTR 0.13 TCGA-ER-A2NH-06 7 11676536 11676536 C T THSD7A Silent p.T81T 0.15 TCGA-ER-A2NH-06 7 124469351 124469351 G A POT1 Silent p.S517S 0.17 TCGA-ER-A2NH-06 7 128482328 128482328 G A FLNC Missense_Mutation p.G722D 0.25 tolerated(0.08) probably_damaging(0.938) TCGA-ER-A2NH-06 7 142612698 142612698 C T TRPV5 Missense_Mutation p.G388E 0.27 deleterious(0) probably_damaging(0.997) TCGA-ER-A2NH-06 7 143771522 143771522 C T OR2A25 Silent p.I70I 0.26 TCGA-ER-A2NH-06 7 144245645 144245645 G A TPK1 Silent p.G184G 0.26 TCGA-ER-A2NH-06 7 148080748 148080748 G A CNTNAP2 Silent p.G1161G 0.27 TCGA-ER-A2NH-06 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.22 tolerated(0.26) benign(0.085) TCGA-ER-A2NH-06 7 150389911 150389911 C T GIMAP2 Silent p.I179I 0.22 TCGA-ER-A2NH-06 7 150439677 150439677 C T GIMAP5 Silent p.F150F 0.13 TCGA-ER-A2NH-06 7 150499314 150499314 C T TMEM176A Silent p.I62I 0.16 TCGA-ER-A2NH-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.18 tolerated(1) benign(0.001) TCGA-ER-A2NH-06 7 154876080 154876080 G A HTR5A Nonsense_Mutation p.W319* 0.21 TCGA-ER-A2NH-06 7 27142096 27142096 C T HOXA2 Silent p.E8E 0.11 TCGA-ER-A2NH-06 7 41729722 41729722 C T INHBA Silent p.G269G 0.28 TCGA-ER-A2NH-06 7 44575876 44575876 G A NPC1L1 Silent p.F611F 0.21 TCGA-ER-A2NH-06 7 48259057 48259057 G A ABCA13 Missense_Mutation p.A132T 0.17 probably_damaging(0.999) TCGA-ER-A2NH-06 7 73933883 73933883 C T GTF2IRD1 Silent p.S282S 0.30 TCGA-ER-A2NH-06 7 82583809 82583809 G A PCLO Nonsense_Mutation p.Q2154* 0.17 TCGA-ER-A2NH-06 7 82784661 82784661 C T PCLO Silent p.K432K 0.21 TCGA-ER-A2NH-06 7 99272200 99272200 C T CYP3A5 Nonsense_Mutation p.W58* 0.21 TCGA-ER-A2NH-06 8 101014533 101014533 C T RGS22 Missense_Mutation p.R896Q 0.13 tolerated(0.24) benign(0.028) TCGA-ER-A2NH-06 8 106814304 106814304 G A ZFPM2 Missense_Mutation p.G665E 0.27 tolerated(0.1) probably_damaging(0.922) TCGA-ER-A2NH-06 8 108296931 108296931 C T ANGPT1 Missense_Mutation p.G395E 0.13 tolerated(0.05) probably_damaging(0.92) TCGA-ER-A2NH-06 8 123965415 123965415 C T ZHX2 Silent p.T555T 0.22 TCGA-ER-A2NH-06 8 20031896 20031896 C T SLC18A1 Missense_Mutation p.G203R 0.09 deleterious(0) probably_damaging(0.982) TCGA-ER-A2NH-06 8 22464830 22464830 C T CCAR2 Missense_Mutation p.P160L 0.22 deleterious(0.02) benign(0.025) TCGA-ER-A2NH-06 8 22464832 22464832 C T CCAR2 Nonsense_Mutation p.Q161* 0.26 TCGA-ER-A2NH-06 8 38205261 38205261 C A WHSC1L1 Silent p.V143V 0.18 TCGA-ER-A2NH-06 8 39694659 39694659 G A ADAM2 Missense_Mutation p.S43L 0.16 deleterious(0.03) benign(0.148) TCGA-ER-A2NH-06 8 42174317 42174317 C T IKBKB Silent p.I340I 0.24 TCGA-ER-A2NH-06 8 59410911 59410911 A T CYP7A1 Silent p.V66V 0.17 TCGA-ER-A2NH-06 8 66988913 66988913 C T DNAJC5B Silent p.H46H 0.18 TCGA-ER-A2NH-06 9 114089805 114089805 C G OR2K2 Missense_Mutation p.L303F 0.11 deleterious(0.04) benign(0.053) TCGA-ER-A2NH-06 9 121929936 121929936 T C BRINP1 Missense_Mutation p.H571R 0.43 deleterious(0) possibly_damaging(0.84) TCGA-ER-A2NH-06 9 130687530 130687530 C T PIP5KL1 Missense_Mutation p.R258Q 0.24 deleterious(0.04) possibly_damaging(0.812) TCGA-ER-A2NH-06 9 136402628 136402628 G A ADAMTSL2 Silent p.G64G 0.31 TCGA-ER-A2NH-06 9 18657720 18657720 C T ADAMTSL1 Silent p.F306F 0.35 TCGA-ER-A2NH-06 9 332409 332409 C T DOCK8 Silent p.V352V 0.36 TCGA-ER-A2NH-06 9 35043926 35043926 A G C9orf131 Missense_Mutation p.N434D 0.26 tolerated(0.3) benign(0.003) TCGA-ER-A2NH-06 9 79321797 79321797 A G PRUNE2 Missense_Mutation p.V1798A 0.28 tolerated(0.6) benign(0.004) TCGA-ER-A2NH-06 9 84532073 84532073 G A SPATA31D5P RNA 0.15 TCGA-ER-A2NH-06 9 85950511 85950511 G A FRMD3 Silent p.Y172Y 0.15 TCGA-ER-A2NH-06 9 95277165 95277165 C T ECM2 Missense_Mutation p.G268R 0.15 tolerated(0.27) benign(0.004) TCGA-ER-A2NH-06 X 101091776 101091776 C T NXF5 Intron 0.20 TCGA-ER-A2NH-06 X 102317811 102317811 G A BEX1 3'UTR 0.55 TCGA-ER-A2NH-06 X 114239877 114239877 A C IL13RA2 Silent p.G333G 0.56 TCGA-ER-A2NH-06 X 117032951 117032951 G A KLHL13 Missense_Mutation p.R633C 0.44 deleterious(0) probably_damaging(0.988) TCGA-ER-A2NH-06 X 118239003 118239003 C T KIAA1210 Silent p.K340K 0.43 TCGA-ER-A2NH-06 X 129518464 129518464 C T GPR119 Missense_Mutation p.E320K 0.46 tolerated(0.38) benign(0.116) TCGA-ER-A2NH-06 X 130220392 130220392 G A ARHGAP36 Silent p.R457R 0.43 TCGA-ER-A2NH-06 X 135498645 135498645 C T GPR112 Missense_Mutation p.P3080S 0.41 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-ER-A2NH-06 X 136112884 136112884 C T GPR101 Missense_Mutation p.S317N 0.38 tolerated_low_confidence(0.17) benign(0.004) TCGA-ER-A2NH-06 X 138630645 138630645 C T F9 Missense_Mutation p.P172L 0.43 deleterious(0) probably_damaging(0.984) TCGA-ER-A2NH-06 X 151124307 151124307 G A GABRE Silent p.F270F 0.47 TCGA-ER-A2NH-06 X 18622217 18622217 G T CDKL5 Silent p.G391G 0.48 TCGA-ER-A2NH-06 X 23019218 23019218 C T DDX53 Silent p.I348I 0.39 TCGA-ER-A2NH-06 X 23933856 23933856 C T CXorf58 Missense_Mutation p.P86S 0.24 deleterious(0) probably_damaging(1) TCGA-ER-A2NH-06 X 3240995 3240995 G A MXRA5 Missense_Mutation p.P911S 0.24 tolerated(0.66) benign(0.001) TCGA-ER-A2NH-06 X 41010280 41010283 GTTT - USP9X Frame_Shift_Del p.F580Vfs*7 0.47 TCGA-ER-A2NH-06 X 46359367 46359367 A G ZNF674 Missense_Mutation p.Y553H 0.40 tolerated(0.12) probably_damaging(0.992) TCGA-ER-A2NH-06 X 96136645 96136645 C T DIAPH2 Missense_Mutation p.S172L 0.58 tolerated(0.06) unknown(0) TCGA-ER-A3ES-06 10 102739634 102739634 G A SEMA4G Missense_Mutation p.R338H 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A3ES-06 10 46122243 46122243 T G ZFAND4 Missense_Mutation p.H343P 0.42 tolerated(0.15) benign(0.006) TCGA-ER-A3ES-06 10 5922267 5922267 G T ANKRD16 Silent p.R308R 0.13 TCGA-ER-A3ES-06 10 73270925 73270925 G A CDH23-AS1 Intron 0.38 TCGA-ER-A3ES-06 11 64329854 64329854 G T SLC22A11 Missense_Mutation p.R256S 0.39 tolerated(0.1) benign(0.068) TCGA-ER-A3ES-06 11 66359321 66359321 G A CCDC87 Missense_Mutation p.P389L 0.80 tolerated(0.27) benign(0.004) TCGA-ER-A3ES-06 11 71201984 71201984 G C NADSYN1 Missense_Mutation p.Q552H 0.13 tolerated(0.16) benign(0.005) TCGA-ER-A3ES-06 12 129558816 129558816 G T TMEM132D Missense_Mutation p.S968R 0.96 deleterious(0) benign(0.295) TCGA-ER-A3ES-06 12 659075 659075 C T B4GALNT3 Nonsense_Mutation p.R332* 0.42 TCGA-ER-A3ES-06 14 20942733 20942733 A T PNP Missense_Mutation p.K95M 0.47 deleterious(0.02) benign(0.42) TCGA-ER-A3ES-06 14 92361349 92361349 G A FBLN5 Silent p.G149G 0.51 TCGA-ER-A3ES-06 15 35530016 35530016 G A ANP32AP1 RNA 0.34 TCGA-ER-A3ES-06 15 48426522 48426522 A C SLC24A5 Missense_Mutation p.L123F 0.55 deleterious(0.02) possibly_damaging(0.788) TCGA-ER-A3ES-06 15 74467459 74467459 G A ISLR Missense_Mutation p.R87H 0.06 tolerated(0.4) probably_damaging(0.973) TCGA-ER-A3ES-06 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.43 deleterious(0) probably_damaging(0.911) TCGA-ER-A3ES-06 19 38135567 38135567 T G ZFP30 Missense_Mutation p.Q27P 0.43 deleterious(0) benign(0.396) TCGA-ER-A3ES-06 1 149904215 149904215 A T MTMR11 Silent p.S331S 0.51 TCGA-ER-A3ES-06 1 206603533 206603533 C G SRGAP2 Missense_Mutation p.L420V 0.61 tolerated(0.12) possibly_damaging(0.511) TCGA-ER-A3ES-06 20 13514718 13514718 G A TASP1 Missense_Mutation p.A249V 0.06 deleterious(0.03) possibly_damaging(0.899) TCGA-ER-A3ES-06 22 24123560 24123560 T G MMP11 Missense_Mutation p.F347V 0.31 deleterious(0) probably_damaging(0.983) TCGA-ER-A3ES-06 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.69 deleterious(0) probably_damaging(1) TCGA-ER-A3ES-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-ER-A3ES-06 5 140515200 140515200 C T PCDHB5 Missense_Mutation p.R62W 0.50 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-ER-A3ES-06 5 16699620 16699620 C - MYO10 Frame_Shift_Del p.R1166Vfs*19 0.25 TCGA-ER-A3ES-06 5 176314705 176314705 C T HK3 Silent p.P449P 0.48 TCGA-ER-A3ES-06 6 136476824 136476824 C T PDE7B Silent p.H213H 0.07 TCGA-ER-A3ES-06 8 103666069 103666069 G A KLF10 Intron 0.19 TCGA-ER-A3ES-06 8 24201075 24201075 C T ADAM28 Silent p.C656C 0.39 TCGA-ER-A3ES-06 8 49832991 49832991 G A SNAI2 Missense_Mutation p.S30F 0.49 tolerated(0.65) benign(0.372) TCGA-ER-A3ES-06 9 111617776 111617776 G A ACTL7B Silent p.H145H 0.49 TCGA-ER-A3ET-06 10 127686010 127686010 T C FANK1 Silent p.S165S 0.11 TCGA-ER-A3ET-06 10 27009216 27009216 C T PDSS1 Silent p.H179H 0.46 TCGA-ER-A3ET-06 11 10828824 10828824 C G EIF4G2 Missense_Mutation p.E7Q 0.62 tolerated_low_confidence(0.14) benign(0.03) TCGA-ER-A3ET-06 11 113813867 113813867 A C HTR3B Missense_Mutation p.N287T 0.19 tolerated(0.1) probably_damaging(1) TCGA-ER-A3ET-06 11 118373881 118373881 C T KMT2A Missense_Mutation p.S2425F 0.18 benign(0.007) TCGA-ER-A3ET-06 11 17548358 17548358 C G USH1C Splice_Site p.X174_splice 0.30 TCGA-ER-A3ET-06 11 49831847 49831847 A G RP11-707M1.1 RNA 0.32 TCGA-ER-A3ET-06 11 5411106 5411106 G A OR51M1 Missense_Mutation p.V160I 0.27 tolerated(1) benign(0.003) TCGA-ER-A3ET-06 11 55541558 55541565 CATTCTGA - OR5D13 Frame_Shift_Del p.L217Ifs*46 0.15 TCGA-ER-A3ET-06 11 66029609 66029609 G A KLC2 Missense_Mutation p.V159I 0.18 tolerated(0.23) benign(0.124) TCGA-ER-A3ET-06 11 7023947 7023947 C T ZNF214 Missense_Mutation p.M40I 0.24 tolerated(0.06) benign(0.089) TCGA-ER-A3ET-06 11 95546701 95546701 G A CEP57 Missense_Mutation p.R151Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-ER-A3ET-06 11 99690276 99690276 G A CNTN5 Silent p.E19E 0.16 TCGA-ER-A3ET-06 12 100660735 100660735 C G DEPDC4 Missense_Mutation p.R40S 0.27 tolerated(0.7) benign(0.003) TCGA-ER-A3ET-06 12 108098446 108098446 T A PWP1 Missense_Mutation p.D333E 0.27 tolerated(0.49) benign(0) TCGA-ER-A3ET-06 12 96617393 96617393 G A ELK3 Missense_Mutation p.D17N 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A3ET-06 12 96680478 96680478 C T CDK17 Missense_Mutation p.V394M 0.22 deleterious(0.01) probably_damaging(1) TCGA-ER-A3ET-06 13 109704741 109704741 G T MYO16 Missense_Mutation p.G967V 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-ER-A3ET-06 13 111996514 111996514 G A TEX29 3'UTR 0.24 TCGA-ER-A3ET-06 14 21216123 21216123 C T EDDM3A Silent p.G128G 0.11 TCGA-ER-A3ET-06 16 10788486 10788486 C T TEKT5 Missense_Mutation p.R82H 0.34 deleterious(0) benign(0.236) TCGA-ER-A3ET-06 16 11647486 11647492 TTTGGAT ACTGGGC LITAF Missense_Mutation p.IQM92AQL 0.36 TCGA-ER-A3ET-06 16 21854779 21854779 C T NPIPB4 Missense_Mutation p.R158H 0.17 benign(0.293) TCGA-ER-A3ET-06 16 56388866 56388866 C A RP11-441F2.5 5'Flank 0.10 TCGA-ER-A3ET-06 16 74447026 74447026 G T CLEC18B Silent p.I195I 0.08 TCGA-ER-A3ET-06 16 832011 832011 C T MSLNL Missense_Mutation p.D38N 0.62 benign(0) TCGA-ER-A3ET-06 17 3101369 3101369 A T OR1A2 Missense_Mutation p.K186M 0.33 deleterious(0) probably_damaging(0.987) TCGA-ER-A3ET-06 17 39766663 39766663 G C KRT16 Nonsense_Mutation p.Y400* 0.31 TCGA-ER-A3ET-06 17 58024091 58024091 A G RPS6KB1 Missense_Mutation p.K507R 0.32 tolerated_low_confidence(0.11) benign(0.411) TCGA-ER-A3ET-06 17 74533629 74533629 A G CYGB 5'UTR 0.16 TCGA-ER-A3ET-06 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.86 deleterious(0) probably_damaging(1) TCGA-ER-A3ET-06 17 79170844 79170844 C T AZI1 Silent p.P553P 0.13 TCGA-ER-A3ET-06 19 17660382 17660382 G T FAM129C Intron 0.22 TCGA-ER-A3ET-06 19 22155506 22155506 T C ZNF208 Missense_Mutation p.Y777C 0.28 deleterious(0.04) probably_damaging(0.987) TCGA-ER-A3ET-06 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.21 deleterious(0) probably_damaging(0.911) TCGA-ER-A3ET-06 19 3118943 3118943 G T GNA11 Missense_Mutation p.Q209H 0.21 deleterious(0) probably_damaging(0.975) TCGA-ER-A3ET-06 19 51961290 51961290 C A SIGLEC8 Missense_Mutation p.D118Y 0.05 deleterious(0) probably_damaging(1) TCGA-ER-A3ET-06 1 120050152 120050152 G A HSD3B1 Missense_Mutation p.R18K 0.41 tolerated(0.11) benign(0.17) TCGA-ER-A3ET-06 1 120295916 120295916 C T HMGCS2 Silent p.Q427Q 0.08 TCGA-ER-A3ET-06 1 159175360 159175360 A T DARC Missense_Mutation p.N46I 0.15 deleterious(0.02) benign(0.203) TCGA-ER-A3ET-06 1 159921372 159921372 T C SLAMF9 3'UTR 0.14 TCGA-ER-A3ET-06 1 160803838 160803838 C T CD244 Intron 0.16 TCGA-ER-A3ET-06 1 161518454 161518454 C A FCGR3A Missense_Mutation p.A62S 0.09 deleterious(0.02) probably_damaging(0.958) TCGA-ER-A3ET-06 1 167408580 167408580 C - CD247 Splice_Site p.X73_splice 0.13 TCGA-ER-A3ET-06 1 167971768 167971768 G C DCAF6 Missense_Mutation p.D318H 0.23 deleterious(0) probably_damaging(0.997) TCGA-ER-A3ET-06 1 174200441 174200441 T C RABGAP1L Missense_Mutation p.Y164H 0.14 tolerated(0.57) benign(0.001) TCGA-ER-A3ET-06 1 196227553 196227553 G C KCNT2 Missense_Mutation p.S994R 0.18 tolerated(0.16) benign(0.016) TCGA-ER-A3ET-06 1 237540689 237540689 T C RYR2 Missense_Mutation p.V177A 0.16 benign(0.402) TCGA-ER-A3ET-06 1 41107425 41107425 C A RIMS3 Missense_Mutation p.G58V 0.25 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-ER-A3ET-06 1 57499231 57499231 C G DAB1 Intron 0.24 TCGA-ER-A3ET-06 1 60107002 60107002 C A FGGY Silent p.P424P 0.08 TCGA-ER-A3ET-06 20 50049132 50049132 G A NFATC2 Missense_Mutation p.R732C 0.11 deleterious(0.03) possibly_damaging(0.836) TCGA-ER-A3ET-06 20 9424678 9424678 G T PLCB4 Splice_Site p.X926_splice 0.10 TCGA-ER-A3ET-06 21 19635164 19635164 A T CHODL Missense_Mutation p.I231L 0.31 tolerated(0.68) probably_damaging(0.994) TCGA-ER-A3ET-06 22 19918614 19918614 C G TXNRD2 Missense_Mutation p.Q37H 0.10 deleterious(0.02) benign(0.005) TCGA-ER-A3ET-06 22 46318697 46318697 C G WNT7B 3'UTR 0.15 TCGA-ER-A3ET-06 22 50553006 50553006 C G MOV10L1 Missense_Mutation p.Q361E 0.15 tolerated(0.5) benign(0.002) TCGA-ER-A3ET-06 2 141751586 141751586 G A LRP1B Silent p.S874S 0.29 TCGA-ER-A3ET-06 2 165365354 165365354 C T GRB14 Silent p.R275R 0.69 TCGA-ER-A3ET-06 2 175440027 175440041 CCTCCGCCACCACCT - WIPF1 In_Frame_Del p.G86_G90del 0.30 TCGA-ER-A3ET-06 2 28352238 28352238 G C BRE Missense_Mutation p.R224P 0.31 deleterious(0.02) benign(0.408) TCGA-ER-A3ET-06 2 30142966 30142966 A T ALK Missense_Mutation p.I187N 0.17 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-ER-A3ET-06 2 89399458 89399458 G A IGKV1-16 Missense_Mutation p.S82L 0.32 deleterious(0.03) benign(0.324) TCGA-ER-A3ET-06 3 107524293 107524293 G A BBX Missense_Mutation p.A939T 0.09 deleterious(0) probably_damaging(0.995) TCGA-ER-A3ET-06 3 108072520 108072520 C T HHLA2 Missense_Mutation p.A104V 0.19 deleterious(0) probably_damaging(0.941) TCGA-ER-A3ET-06 3 124492548 124492548 G A ITGB5 Silent p.C635C 0.16 TCGA-ER-A3ET-06 3 134977926 134977926 G T EPHB1 Missense_Mutation p.R973S 0.38 deleterious(0) possibly_damaging(0.483) TCGA-ER-A3ET-06 3 161146982 161146982 T G RP11-3P17.5 RNA 0.20 TCGA-ER-A3ET-06 3 164786518 164786518 G A SI Missense_Mutation p.R159W 0.20 deleterious(0) probably_damaging(0.986) TCGA-ER-A3ET-06 3 169540344 169540344 G T LRRIQ4 Missense_Mutation p.G212V 0.13 tolerated(0.12) benign(0.065) TCGA-ER-A3ET-06 3 186974605 186974605 G A MASP1 Silent p.I197I 0.24 TCGA-ER-A3ET-06 3 44948523 44948523 C T TGM4 Silent p.F386F 0.34 TCGA-ER-A3ET-06 3 52514200 52514200 G A NISCH Missense_Mutation p.G473S 0.19 deleterious(0) benign(0.01) TCGA-ER-A3ET-06 4 100349726 100349726 T A ADH7 Missense_Mutation p.K81M 0.31 deleterious(0.05) possibly_damaging(0.754) TCGA-ER-A3ET-06 4 4228228 4228228 G A OTOP1 Missense_Mutation p.R122C 0.17 deleterious(0.03) possibly_damaging(0.719) TCGA-ER-A3ET-06 4 94750467 94750467 G C ATOH1 Missense_Mutation p.K130N 0.49 deleterious(0) probably_damaging(0.981) TCGA-ER-A3ET-06 4 9784092 9784092 C T DRD5 Missense_Mutation p.R147C 0.28 tolerated(0.15) benign(0.159) TCGA-ER-A3ET-06 5 109191010 109191010 T G MAN2A1 Missense_Mutation p.V1049G 0.22 deleterious(0) probably_damaging(0.958) TCGA-ER-A3ET-06 5 156381695 156381695 G A TIMD4 Missense_Mutation p.S44F 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-ER-A3ET-06 5 160886792 160886792 T C GABRB2 Missense_Mutation p.N99S 0.23 tolerated(1) benign(0.002) TCGA-ER-A3ET-06 5 36677020 36677020 C G SLC1A3 Missense_Mutation p.S198R 0.17 tolerated(0.51) benign(0.02) TCGA-ER-A3ET-06 5 36679892 36679892 C T SLC1A3 Missense_Mutation p.R342W 0.36 deleterious(0) probably_damaging(0.989) TCGA-ER-A3ET-06 5 43556095 43556095 G C PAIP1 Missense_Mutation p.T91R 0.21 tolerated(0.71) benign(0.001) TCGA-ER-A3ET-06 5 71616252 71616252 C A PTCD2 Silent p.R15R 0.28 TCGA-ER-A3ET-06 5 76932909 76932909 C T OTP Missense_Mutation p.D62N 0.44 deleterious(0.02) benign(0.101) TCGA-ER-A3ET-06 5 79032476 79032476 G A CMYA5 Missense_Mutation p.E2630K 0.21 benign(0.376) TCGA-ER-A3ET-06 5 79372739 79372739 C A THBS4 Missense_Mutation p.L652M 0.04 deleterious(0) probably_damaging(0.999) TCGA-ER-A3ET-06 6 11232859 11232859 G A NEDD9 5'UTR 0.59 TCGA-ER-A3ET-06 6 29012357 29012357 A G OR2W1 Missense_Mutation p.V199A 0.15 tolerated(0.36) probably_damaging(0.999) TCGA-ER-A3ET-06 6 31777892 31777892 G C HSPA1L Missense_Mutation p.P620A 0.14 tolerated_low_confidence(0.42) benign(0.013) TCGA-ER-A3ET-06 6 3273470 3273470 G A SLC22A23 Missense_Mutation p.P627L 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A3ET-06 6 69646417 69646417 C A BAI3 Missense_Mutation p.S292Y 0.18 deleterious(0) possibly_damaging(0.556) TCGA-ER-A3ET-06 7 100028370 100028392 TTGCACTGATGAGGGCCATGTAG - MEPCE Frame_Shift_Del p.C244Sfs*13 0.09 TCGA-ER-A3ET-06 7 100361701 100361701 T G ZAN Silent p.L1383L 0.30 TCGA-ER-A3ET-06 7 127343357 127343357 C G SND1 Missense_Mutation p.L274V 0.19 tolerated(0.74) benign(0.326) TCGA-ER-A3ET-06 7 150648643 150648643 G A KCNH2 Missense_Mutation p.T613M 0.24 deleterious(0) probably_damaging(0.998) TCGA-ER-A3ET-06 7 39500186 39500186 G A POU6F2 Silent p.L481L 0.48 TCGA-ER-A3ET-06 7 87011494 87011494 G T CROT Missense_Mutation p.R417S 0.17 tolerated(0.07) benign(0.012) TCGA-ER-A3ET-06 7 91631838 91631838 T C AKAP9 Silent p.A869A 0.16 TCGA-ER-A3ET-06 7 98543392 98543392 G C TRRAP Missense_Mutation p.R1499T 0.22 benign(0.014) TCGA-ER-A3ET-06 7 98557029 98557029 C T TRRAP Silent p.N2128N 0.27 TCGA-ER-A3ET-06 7 98557030 98557030 C T TRRAP Missense_Mutation p.L2129F 0.27 probably_damaging(0.994) TCGA-ER-A3ET-06 7 98558887 98558887 C T TRRAP Nonsense_Mutation p.Q2158* 0.17 TCGA-ER-A3ET-06 7 98558955 98558955 C T TRRAP Silent p.V2180V 0.18 TCGA-ER-A3ET-06 7 98558973 98558973 C T TRRAP Silent p.I2186I 0.19 TCGA-ER-A3ET-06 8 113529334 113529334 C G CSMD3 Missense_Mutation p.G1562A 0.22 deleterious(0) probably_damaging(0.986) TCGA-ER-A3ET-06 8 2824186 2824186 G T CSMD1 Silent p.I3002I 0.20 TCGA-ER-A3ET-06 8 2824193 2824193 G T CSMD1 Nonsense_Mutation p.S3000* 0.22 TCGA-ER-A3ET-06 8 41525969 41525969 G A ANK1 Missense_Mutation p.T1778I 0.28 deleterious_low_confidence(0.04) benign(0.124) TCGA-ER-A3ET-06 8 48626202 48626202 A T SPIDR Missense_Mutation p.Q780H 0.11 deleterious(0.01) possibly_damaging(0.66) TCGA-ER-A3ET-06 8 52232505 52232505 G A PXDNL Silent p.C1446C 0.06 TCGA-ER-A3ET-06 8 69103986 69103986 C G PREX2 Missense_Mutation p.P1459R 0.14 deleterious(0) possibly_damaging(0.621) TCGA-ER-A3ET-06 9 100124130 100124130 G A CCDC180 Silent p.G1246G 0.21 TCGA-ER-A3ET-06 9 21859395 21859395 G A MTAP Missense_Mutation p.E262K 0.15 tolerated(0.09) benign(0.076) TCGA-ER-A3ET-06 9 27206675 27206675 C T TEK Silent p.D820D 0.21 TCGA-ER-A3ET-06 X 139038312 139038312 T C CXorf66 Missense_Mutation p.K277E 0.50 tolerated(0.1) possibly_damaging(0.801) TCGA-ER-A3ET-06 X 153688986 153688986 A G PLXNA3 Missense_Mutation p.I155V 0.15 tolerated(0.57) benign(0.005) TCGA-ER-A3ET-06 X 27999153 27999153 C A DCAF8L1 Missense_Mutation p.R100M 0.33 tolerated(0.26) benign(0.084) TCGA-ER-A3ET-06 X 48547271 48547271 C T WAS Missense_Mutation p.P385L 0.30 tolerated(0.22) unknown(0) TCGA-ER-A3ET-06 X 76931728 76931728 C A ATRX Nonsense_Mutation p.E1268* 0.28 TCGA-ER-A3ET-06 X 96369879 96369879 A T DIAPH2 Missense_Mutation p.E835V 0.36 deleterious(0) probably_damaging(0.995) TCGA-ER-A3EV-06 10 55566808 55566808 C T PCDH15 Missense_Mutation p.C1526Y 0.44 tolerated_low_confidence(0.06) benign(0) TCGA-ER-A3EV-06 11 101832787 101832787 G A KIAA1377 Missense_Mutation p.E341K 0.05 tolerated(0.05) benign(0.056) TCGA-ER-A3EV-06 11 102818680 102818680 G C MMP13 Missense_Mutation p.A384G 0.08 deleterious(0.01) benign(0.027) TCGA-ER-A3EV-06 11 30352518 30352518 G A ARL14EP Missense_Mutation p.G8E 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A3EV-06 11 40136474 40136474 C T LRRC4C Missense_Mutation p.V457I 0.36 tolerated(0.05) benign(0.021) TCGA-ER-A3EV-06 11 48346857 48346857 G A OR4C3 Missense_Mutation p.C122Y 0.07 deleterious(0) possibly_damaging(0.861) TCGA-ER-A3EV-06 11 75590991 75590991 C A UVRAG Missense_Mutation p.F113L 0.05 tolerated(0.16) possibly_damaging(0.499) TCGA-ER-A3EV-06 11 76507446 76507446 G A TSKU Silent p.S262S 0.06 TCGA-ER-A3EV-06 11 78381398 78381398 G C TENM4 Missense_Mutation p.L1998V 0.08 deleterious(0.03) possibly_damaging(0.474) TCGA-ER-A3EV-06 12 102043099 102043099 G T MYBPC1 Missense_Mutation p.G395C 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A3EV-06 12 110983768 110983768 T G PPTC7 Silent p.S173S 0.22 TCGA-ER-A3EV-06 12 113664682 113664682 G C TPCN1 Missense_Mutation p.V81L 0.14 tolerated_low_confidence(0.16) possibly_damaging(0.527) TCGA-ER-A3EV-06 12 52156432 52156432 G C SCN8A Missense_Mutation p.G839A 0.11 deleterious(0) probably_damaging(0.99) TCGA-ER-A3EV-06 12 54967430 54967430 C G PDE1B Missense_Mutation p.T334R 0.20 deleterious(0) probably_damaging(0.966) TCGA-ER-A3EV-06 12 69995079 69995079 C G CCT2 Missense_Mutation p.R528G 0.38 deleterious(0) probably_damaging(0.954) TCGA-ER-A3EV-06 13 113470497 113470497 C G ATP11A Missense_Mutation p.A181G 0.17 deleterious(0) possibly_damaging(0.835) TCGA-ER-A3EV-06 13 25480585 25480585 C G CENPJ Missense_Mutation p.G531R 0.23 tolerated(0.16) benign(0.086) TCGA-ER-A3EV-06 14 102901462 102901462 A - TECPR2 Frame_Shift_Del p.S770Vfs*2 0.17 TCGA-ER-A3EV-06 14 64954352 64954352 G A ZBTB25 Silent p.P199P 0.39 TCGA-ER-A3EV-06 16 56485138 56485138 G C NUDT21 5'UTR 0.08 TCGA-ER-A3EV-06 17 2281207 2281209 CTA - SGSM2 In_Frame_Del p.Y954del 0.13 TCGA-ER-A3EV-06 18 30791879 30791879 T G CCDC178 Missense_Mutation p.K740T 0.94 tolerated(0.06) benign(0.099) TCGA-ER-A3EV-06 18 48500908 48500908 T C ELAC1 Missense_Mutation p.L45P 0.73 deleterious(0) probably_damaging(0.981) TCGA-ER-A3EV-06 19 13993591 13993591 A C C19orf57 3'UTR 0.30 TCGA-ER-A3EV-06 19 1465272 1465272 C T APC2 Missense_Mutation p.R658C 0.50 possibly_damaging(0.776) TCGA-ER-A3EV-06 19 18391463 18391463 T C JUND Missense_Mutation p.N278D 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A3EV-06 19 34687642 34687642 G A LSM14A Missense_Mutation p.G130E 0.11 tolerated(0.06) benign(0.162) TCGA-ER-A3EV-06 19 39517561 39517561 G C FBXO27 Missense_Mutation p.F219L 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-ER-A3EV-06 19 44222677 44222677 C T IRGC 5'UTR 0.07 TCGA-ER-A3EV-06 19 52129337 52129337 C A SIGLEC5 Missense_Mutation p.G471V 0.09 tolerated(0.36) possibly_damaging(0.598) TCGA-ER-A3EV-06 19 52216994 52216994 C T HAS1 Missense_Mutation p.A475T 0.18 tolerated(0.14) benign(0.222) TCGA-ER-A3EV-06 19 56473470 56473470 G C NLRP8 Missense_Mutation p.D694H 0.13 deleterious(0) probably_damaging(0.972) TCGA-ER-A3EV-06 19 57065333 57065333 T C ZFP28 Silent p.H393H 0.30 TCGA-ER-A3EV-06 19 5751795 5751795 G A CATSPERD Silent p.A375A 0.41 TCGA-ER-A3EV-06 1 145474054 145474054 C G ANKRD34A Silent p.L242L 0.26 TCGA-ER-A3EV-06 1 152080033 152080033 C G TCHH Missense_Mutation p.R1887P 0.21 possibly_damaging(0.453) TCGA-ER-A3EV-06 1 155165884 155165884 C T THBS3 Silent p.A902A 0.07 TCGA-ER-A3EV-06 1 160063722 160063722 C A IGSF8 Missense_Mutation p.V228L 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-ER-A3EV-06 1 160281796 160281796 C T COPA Missense_Mutation p.G313D 0.74 deleterious(0) probably_damaging(0.998) TCGA-ER-A3EV-06 1 167787500 167787500 G A ADCY10 Missense_Mutation p.A1431V 0.53 deleterious(0) probably_damaging(0.942) TCGA-ER-A3EV-06 1 176915076 176915076 C G ASTN1 Silent p.L745L 0.06 TCGA-ER-A3EV-06 1 204161910 204161910 C T KISS1 Missense_Mutation p.R32K 0.81 tolerated(0.64) benign(0.004) TCGA-ER-A3EV-06 1 204162026 204162026 C G KISS1 5'UTR 0.74 TCGA-ER-A3EV-06 1 214813510 214813510 A C CENPF Missense_Mutation p.E610A 0.19 possibly_damaging(0.453) TCGA-ER-A3EV-06 1 231094024 231094024 C T TTC13 Missense_Mutation p.E130K 0.05 tolerated(0.16) probably_damaging(0.935) TCGA-ER-A3EV-06 1 243471466 243471466 G C SDCCAG8 Missense_Mutation p.E306Q 0.28 deleterious(0.03) possibly_damaging(0.868) TCGA-ER-A3EV-06 1 89298451 89298451 G A PKN2 Missense_Mutation p.E863K 0.23 deleterious(0) probably_damaging(0.935) TCGA-ER-A3EV-06 20 57769799 57769799 C T ZNF831 Missense_Mutation p.A1242V 0.17 tolerated(0.68) benign(0.001) TCGA-ER-A3EV-06 20 61938923 61938923 G T COL20A1 Missense_Mutation p.S193I 0.20 tolerated(0.16) benign(0.314) TCGA-ER-A3EV-06 20 62631000 62631000 C T PRPF6 Missense_Mutation p.T304M 0.34 deleterious(0) possibly_damaging(0.772) TCGA-ER-A3EV-06 21 28337870 28337870 G A ADAMTS5 Missense_Mutation p.R281W 0.38 deleterious(0) probably_damaging(0.916) TCGA-ER-A3EV-06 22 30741037 30741037 C T SF3A1 Missense_Mutation p.R179H 0.38 deleterious(0) probably_damaging(0.991) TCGA-ER-A3EV-06 2 118703131 118703131 T A CCDC93 Missense_Mutation p.T442S 0.15 tolerated(0.74) benign(0) TCGA-ER-A3EV-06 2 172195998 172195998 A G METTL8 Missense_Mutation p.F101S 0.19 deleterious(0) probably_damaging(0.997) TCGA-ER-A3EV-06 2 206869685 206869685 C A INO80D Missense_Mutation p.D831Y 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.87) TCGA-ER-A3EV-06 2 27600878 27600878 G T ZNF513 Missense_Mutation p.P387H 0.15 deleterious(0) probably_damaging(0.971) TCGA-ER-A3EV-06 2 71839934 71839934 C G DYSF Missense_Mutation p.P1462R 0.18 tolerated(0.34) benign(0.005) TCGA-ER-A3EV-06 3 128204702 128204702 G C GATA2 Missense_Mutation p.P247A 0.11 tolerated(0.61) probably_damaging(0.98) TCGA-ER-A3EV-06 3 47887313 47887313 C G DHX30 Missense_Mutation p.L355V 0.19 tolerated(0.25) possibly_damaging(0.449) TCGA-ER-A3EV-06 3 49933673 49933673 G T MST1R Silent p.A868A 0.04 TCGA-ER-A3EV-06 4 37591786 37591786 G A C4orf19 Missense_Mutation p.D37N 0.20 tolerated(0.18) benign(0.096) TCGA-ER-A3EV-06 4 5564656 5564656 C G EVC2 Missense_Mutation p.E1282D 0.13 tolerated(0.07) possibly_damaging(0.601) TCGA-ER-A3EV-06 5 140482367 140482367 C A PCDHB3 Silent p.R712R 0.30 TCGA-ER-A3EV-06 5 151266281 151266281 C G GLRA1 Splice_Site p.X84_splice 0.36 TCGA-ER-A3EV-06 6 18264783 18264783 G A DEK 5'UTR 0.29 TCGA-ER-A3EV-06 6 29455429 29455429 A G MAS1L Missense_Mutation p.L84P 0.06 deleterious(0) probably_damaging(0.941) TCGA-ER-A3EV-06 6 31129289 31129289 C T TCF19 Silent p.L102L 0.26 TCGA-ER-A3EV-06 6 43608100 43608100 C A MAD2L1BP Missense_Mutation p.R251S 0.07 deleterious(0) probably_damaging(0.995) TCGA-ER-A3EV-06 6 47846459 47846459 G A PTCHD4 Silent p.N707N 0.17 TCGA-ER-A3EV-06 7 11446636 11446636 A C THSD7A Missense_Mutation p.D1321E 0.08 tolerated(1) benign(0.241) TCGA-ER-A3EV-06 7 133502234 133502234 T C EXOC4 Silent p.P557P 0.17 TCGA-ER-A3EV-06 7 150094916 150094916 C T ZNF775 Silent p.N449N 0.15 TCGA-ER-A3EV-06 7 150217476 150217476 G T GIMAP7 Missense_Mutation p.E138D 0.21 tolerated(0.28) benign(0.168) TCGA-ER-A3EV-06 7 32909536 32909536 A G KBTBD2 Silent p.I431I 0.15 TCGA-ER-A3EV-06 7 44096357 44096357 G T DBNL Missense_Mutation p.G110V 0.14 deleterious(0.02) possibly_damaging(0.681) TCGA-ER-A3EV-06 8 116426706 116426706 C T TRPS1 Missense_Mutation p.V1144M 0.17 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-ER-A3EV-06 8 116616407 116616407 G A TRPS1 Missense_Mutation p.P597S 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A3EV-06 8 12946210 12946211 - CA DLC1 Frame_Shift_Ins p.S1360* 0.25 TCGA-ER-A3EV-06 8 145947382 145947382 G T ZNF251 Missense_Mutation p.L555M 0.18 deleterious(0.02) possibly_damaging(0.665) TCGA-ER-A3EV-06 8 1719225 1719225 A G CLN8 Missense_Mutation p.N2S 0.36 tolerated(0.37) benign(0) TCGA-ER-A3EV-06 8 24208786 24208786 G A ADAM28 Missense_Mutation p.R714K 0.28 tolerated(0.15) benign(0.002) TCGA-ER-A3EV-06 8 41801438 41801438 G C KAT6A Missense_Mutation p.L686V 0.22 probably_damaging(0.992) TCGA-ER-A3EV-06 8 55537498 55537498 T C RP1 Silent p.T352T 0.07 TCGA-ER-A3EV-06 8 61768563 61768563 C T CHD7 Silent p.N2322N 0.13 TCGA-ER-A3EV-06 8 72211296 72211296 G C EYA1 Missense_Mutation p.T271R 0.07 tolerated(0.15) possibly_damaging(0.625) TCGA-ER-A3EV-06 8 72211333 72211333 G C EYA1 Missense_Mutation p.Q259E 0.05 tolerated(0.3) probably_damaging(0.989) TCGA-ER-A3EV-06 8 72211356 72211356 G A EYA1 Missense_Mutation p.S251F 0.04 tolerated(0.21) probably_damaging(0.994) TCGA-ER-A3EV-06 8 72211369 72211369 G T EYA1 Missense_Mutation p.P247T 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A3EV-06 8 72211435 72211435 G C EYA1 Missense_Mutation p.Q225E 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-ER-A3EV-06 8 77619890 77619890 G A ZFHX4 Silent p.A900A 0.14 TCGA-ER-A3EV-06 8 80992711 80992711 G A TPD52 5'UTR 0.13 TCGA-ER-A3EV-06 8 86025203 86025203 G A LRRCC1 Missense_Mutation p.R138K 0.15 tolerated(0.77) benign(0.001) TCGA-ER-A3EV-06 8 86025211 86025211 G T LRRCC1 Missense_Mutation p.D141Y 0.17 tolerated(0.08) benign(0.099) TCGA-ER-A3EV-06 8 86037142 86037142 G C LRRCC1 Missense_Mutation p.D414H 0.04 deleterious(0.02) possibly_damaging(0.491) TCGA-ER-A3EV-06 9 117848905 117848905 C T TNC Missense_Mutation p.G369S 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A3EV-06 X 106171619 106171619 G T CLDN2 Missense_Mutation p.C54F 0.78 deleterious(0) probably_damaging(1) TCGA-ER-A3EV-06 X 12728628 12728628 C G FRMPD4 Missense_Mutation p.N527K 0.65 tolerated(0.31) benign(0.009) TCGA-ER-A3EV-06 X 129518563 129518563 G A GPR119 Nonsense_Mutation p.R287* 0.37 TCGA-ER-A3EV-06 X 153689068 153689068 G A PLXNA3 Missense_Mutation p.S182N 0.13 deleterious(0) possibly_damaging(0.802) TCGA-ER-A3EV-06 X 2343291 2343291 A C DHRSX Missense_Mutation p.I55S 0.11 deleterious(0) possibly_damaging(0.677) TCGA-ER-A3EV-06 X 32408205 32408205 G A DMD Nonsense_Mutation p.Q1443* 0.38 TCGA-ER-A3EV-06 X 73960214 73960214 C T KIAA2022 Missense_Mutation p.R1393K 0.49 tolerated(0.75) benign(0.005) TCGA-ER-A3PL-06 10 106865239 106865239 C T SORCS3 Missense_Mutation p.S393F 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A3PL-06 10 11963065 11963065 G A UPF2 3'UTR 0.67 TCGA-ER-A3PL-06 10 124380791 124380791 G A DMBT1 Missense_Mutation p.D1706N 0.24 tolerated(0.35) benign(0.405) TCGA-ER-A3PL-06 10 21962837 21962837 C T MLLT10 Missense_Mutation p.P537L 0.16 tolerated(0.33) possibly_damaging(0.717) TCGA-ER-A3PL-06 10 24832126 24832126 G A KIAA1217 Missense_Mutation p.M1309I 0.60 tolerated(0.6) benign(0) TCGA-ER-A3PL-06 10 44871457 44871457 C T CXCL12 3'Flank 0.13 TCGA-ER-A3PL-06 10 44873848 44873848 C T CXCL12 Intron 0.29 TCGA-ER-A3PL-06 10 46998957 46998957 C T GPRIN2 Missense_Mutation p.S26F 0.31 tolerated(0.21) benign(0.027) TCGA-ER-A3PL-06 10 50944211 50944211 G A OGDHL Missense_Mutation p.P923S 0.18 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 10 50948839 50948839 G C OGDHL Missense_Mutation p.T686R 0.63 tolerated(0.09) benign(0.088) TCGA-ER-A3PL-06 10 61829691 61829691 C T ANK3 Missense_Mutation p.D3650N 0.10 probably_damaging(0.977) TCGA-ER-A3PL-06 10 62551976 62551976 C T CDK1 Missense_Mutation p.P242S 0.11 deleterious(0.01) possibly_damaging(0.515) TCGA-ER-A3PL-06 10 72533997 72533997 G A TBATA Missense_Mutation p.P297S 0.44 tolerated(0.43) benign(0.009) TCGA-ER-A3PL-06 10 75867067 75867072 GGAGCC - VCL In_Frame_Del p.Q838_P840delinsH 0.57 TCGA-ER-A3PL-06 10 76468125 76468125 C T ADK Silent p.I337I 0.47 TCGA-ER-A3PL-06 10 76857476 76857476 C T DUSP13 Missense_Mutation p.G106E 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 10 7765479 7765479 C T ITIH2 Silent p.I311I 0.21 TCGA-ER-A3PL-06 10 95556731 95556731 C T LGI1 Missense_Mutation p.S282F 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A3PL-06 10 96022312 96022312 G A PLCE1 Silent p.S1292S 0.21 TCGA-ER-A3PL-06 10 96058147 96058147 G T PLCE1 Missense_Mutation p.G1727C 0.57 deleterious(0.01) benign(0.403) TCGA-ER-A3PL-06 10 96066279 96066279 C T PLCE1 Silent p.F1906F 0.58 TCGA-ER-A3PL-06 10 96066280 96066280 C T PLCE1 Missense_Mutation p.R1907C 0.57 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 10 97096831 97096831 G A SORBS1 Missense_Mutation p.P1029L 0.14 deleterious_low_confidence(0) benign(0.11) TCGA-ER-A3PL-06 11 10328279 10328279 G A ADM 3'UTR 0.19 TCGA-ER-A3PL-06 11 113848644 113848644 G A HTR3A Silent p.V79V 0.64 TCGA-ER-A3PL-06 11 11394176 11394176 C T GALNT18 Silent p.R326R 0.52 TCGA-ER-A3PL-06 11 11394177 11394177 C T GALNT18 Splice_Site p.X326_splice 0.51 TCGA-ER-A3PL-06 11 118211182 118211182 C T CD3D Missense_Mutation p.G61E 0.59 deleterious(0) probably_damaging(0.998) TCGA-ER-A3PL-06 11 124761448 124761448 C T ROBO4 Nonsense_Mutation p.W565* 0.25 TCGA-ER-A3PL-06 11 19261749 19261749 C T E2F8 5'UTR 0.11 TCGA-ER-A3PL-06 11 27016325 27016325 C T FIBIN Silent p.F84F 0.09 TCGA-ER-A3PL-06 11 35232909 35232909 C T CD44 Missense_Mutation p.P575S 0.30 tolerated(0.1) possibly_damaging(0.881) TCGA-ER-A3PL-06 11 44129352 44129352 C T EXT2 Silent p.F63F 0.54 TCGA-ER-A3PL-06 11 45265888 45265888 G A SYT13 Silent p.T332T 0.19 TCGA-ER-A3PL-06 11 47360164 47360164 C T MYBPC3 Missense_Mutation p.E739K 0.18 deleterious(0) possibly_damaging(0.769) TCGA-ER-A3PL-06 11 4903888 4903888 C T OR51T1 Silent p.F280F 0.16 TCGA-ER-A3PL-06 11 5021148 5021148 G A OR51L1 Silent p.R312R 0.10 TCGA-ER-A3PL-06 11 51412047 51412047 C T OR4A5 Missense_Mutation p.A117T 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-ER-A3PL-06 11 51412232 51412232 G A OR4A5 Missense_Mutation p.S55F 0.24 deleterious_low_confidence(0) benign(0.295) TCGA-ER-A3PL-06 11 55135510 55135510 G A OR4A15 Missense_Mutation p.G51R 0.25 tolerated_low_confidence(0.37) benign(0.011) TCGA-ER-A3PL-06 11 55135889 55135889 G A OR4A15 Nonsense_Mutation p.W177* 0.59 TCGA-ER-A3PL-06 11 5664713 5664713 C T TRIM34 Missense_Mutation p.S414F 0.50 deleterious(0.01) probably_damaging(0.988) TCGA-ER-A3PL-06 11 587429 587429 T G PHRF1 Missense_Mutation p.Y129D 0.30 deleterious(0) possibly_damaging(0.759) TCGA-ER-A3PL-06 11 5968871 5968871 C T OR56A3 Missense_Mutation p.P99S 0.48 tolerated(0.69) benign(0) TCGA-ER-A3PL-06 11 60704608 60704608 G A SLC15A3 3'UTR 0.47 TCGA-ER-A3PL-06 11 61404558 61404558 C T RPLP0P2 RNA 0.19 TCGA-ER-A3PL-06 11 62445419 62445419 C T UBXN1 Silent p.K154K 0.20 TCGA-ER-A3PL-06 11 64022396 64022396 C T PLCB3 Silent p.G91G 0.61 TCGA-ER-A3PL-06 11 67219093 67219093 G A GPR152 Missense_Mutation p.S368L 0.17 tolerated_low_confidence(0.53) benign(0.001) TCGA-ER-A3PL-06 11 67286506 67286506 G A CABP2 3'UTR 0.29 TCGA-ER-A3PL-06 11 6913089 6913089 G A OR2D2 Silent p.L215L 0.55 TCGA-ER-A3PL-06 11 73021727 73021727 G A ARHGEF17 Missense_Mutation p.G682S 0.14 tolerated_low_confidence(0.17) benign(0.073) TCGA-ER-A3PL-06 11 76877191 76877191 C T MYO7A Nonsense_Mutation p.Q594* 0.24 TCGA-ER-A3PL-06 11 88301126 88301126 C T GRM5 Nonsense_Mutation p.W575* 0.17 TCGA-ER-A3PL-06 11 89774449 89774449 G A TRIM49C Missense_Mutation p.E364K 0.23 tolerated(0.55) benign(0.013) TCGA-ER-A3PL-06 12 104133226 104133226 C T STAB2 Missense_Mutation p.P1912S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A3PL-06 12 108589781 108589781 C T WSCD2 Missense_Mutation p.P58S 0.43 tolerated(0.29) benign(0.008) TCGA-ER-A3PL-06 12 112130549 112130549 C T ACAD10 Silent p.L12L 0.86 TCGA-ER-A3PL-06 12 11546516 11546516 C T PRB2 Missense_Mutation p.G166R 0.14 tolerated(0.05) unknown(0) TCGA-ER-A3PL-06 12 117655918 117655918 C T NOS1 Missense_Mutation p.E1442K 0.80 deleterious(0) probably_damaging(0.998) TCGA-ER-A3PL-06 12 12318066 12318066 T A LRP6 Missense_Mutation p.D570V 0.39 deleterious(0) possibly_damaging(0.835) TCGA-ER-A3PL-06 12 12318067 12318067 C T LRP6 Missense_Mutation p.D570N 0.39 deleterious(0.04) possibly_damaging(0.821) TCGA-ER-A3PL-06 12 130648340 130648340 G A FZD10 Missense_Mutation p.A285T 0.21 tolerated(0.12) probably_damaging(0.977) TCGA-ER-A3PL-06 12 132401071 132401071 C T ULK1 Silent p.P669P 0.79 TCGA-ER-A3PL-06 12 133438182 133438182 G A CHFR Missense_Mutation p.P220S 0.21 tolerated(0.38) benign(0.006) TCGA-ER-A3PL-06 12 14613452 14613452 C T ATF7IP Missense_Mutation p.P728S 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-ER-A3PL-06 12 1983818 1983818 C T CACNA2D4 Silent p.R610R 0.09 TCGA-ER-A3PL-06 12 21205187 21205187 G A SLCO1B7 Missense_Mutation p.E450K 0.40 tolerated(1) benign(0) TCGA-ER-A3PL-06 12 2705076 2705076 G A CACNA1C Silent p.T900T 0.55 TCGA-ER-A3PL-06 12 48371143 48371143 G A COL2A1 Missense_Mutation p.P1078L 0.91 unknown(0) TCGA-ER-A3PL-06 12 53070082 53070082 G A KRT1 Silent p.T484T 0.23 TCGA-ER-A3PL-06 12 55688295 55688295 G A OR6C6 Missense_Mutation p.S241F 0.78 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-ER-A3PL-06 12 56827628 56827628 G A TIMELESS Silent p.I60I 0.17 TCGA-ER-A3PL-06 12 56868855 56868855 G A GLS2 Silent p.A323A 0.82 TCGA-ER-A3PL-06 12 57111308 57111308 G A NACA Intron 0.23 TCGA-ER-A3PL-06 12 57579562 57579562 G A LRP1 Missense_Mutation p.A2238T 0.20 possibly_damaging(0.856) TCGA-ER-A3PL-06 12 57603648 57603648 G A LRP1 Missense_Mutation p.E4146K 0.16 benign(0.273) TCGA-ER-A3PL-06 12 6030386 6030386 G A ANO2 Silent p.F114F 0.11 TCGA-ER-A3PL-06 12 63131336 63131336 G A PPM1H Silent p.I300I 0.19 TCGA-ER-A3PL-06 12 9225313 9225313 G A A2M Missense_Mutation p.S1304L 0.50 tolerated(0.11) benign(0.062) TCGA-ER-A3PL-06 12 9262586 9262586 C T A2M Missense_Mutation p.E184K 0.52 tolerated(0.38) benign(0.014) TCGA-ER-A3PL-06 13 100191742 100191742 C T TM9SF2 Silent p.P253P 0.45 TCGA-ER-A3PL-06 13 109793693 109793693 C T MYO16 Silent p.S1689S 0.18 TCGA-ER-A3PL-06 13 111368020 111368020 C T ING1 Missense_Mutation p.S77F 0.30 deleterious_low_confidence(0) benign(0) TCGA-ER-A3PL-06 13 20012264 20012264 G A TPTE2 Missense_Mutation p.L335F 0.08 deleterious(0.01) possibly_damaging(0.75) TCGA-ER-A3PL-06 13 35756556 35756556 G A NBEA Silent p.L1574L 0.51 TCGA-ER-A3PL-06 13 38172932 38172932 A T POSTN 5'UTR 0.55 TCGA-ER-A3PL-06 13 39544347 39544347 C T STOML3 Missense_Mutation p.R164Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-ER-A3PL-06 13 46287923 46287923 C T SPERT Missense_Mutation p.R255C 0.24 deleterious(0) probably_damaging(0.999) TCGA-ER-A3PL-06 13 73357695 73357695 C T PIBF1 Missense_Mutation p.P30S 0.48 tolerated(0.14) probably_damaging(0.999) TCGA-ER-A3PL-06 14 103418843 103418843 G A CDC42BPB Missense_Mutation p.A1055V 0.19 tolerated(0.95) probably_damaging(0.992) TCGA-ER-A3PL-06 14 104206624 104206624 G A PPP1R13B Missense_Mutation p.S710F 0.21 deleterious(0) probably_damaging(0.999) TCGA-ER-A3PL-06 14 105478262 105478262 A G CDCA4 Missense_Mutation p.F2S 0.41 deleterious(0) probably_damaging(0.922) TCGA-ER-A3PL-06 14 20248547 20248547 G A OR4M1 Silent p.E22E 0.37 TCGA-ER-A3PL-06 14 20296339 20296339 C T OR4N2 Silent p.I244I 0.35 TCGA-ER-A3PL-06 14 24035730 24035730 C T AP1G2 Intron 0.16 TCGA-ER-A3PL-06 14 33292869 33292869 G A AKAP6 Silent p.K1950K 0.38 TCGA-ER-A3PL-06 14 51224657 51224657 T C NIN Missense_Mutation p.M1031V 0.04 tolerated(0.25) benign(0) TCGA-ER-A3PL-06 14 52520558 52520558 C T NID2 Missense_Mutation p.E390K 0.23 tolerated(0.56) benign(0.004) TCGA-ER-A3PL-06 14 61997128 61997128 C T RP11-47I22.4 Missense_Mutation p.L31F 0.15 deleterious(0) probably_damaging(0.995) TCGA-ER-A3PL-06 14 69358793 69358793 G A ACTN1 Missense_Mutation p.P355S 0.35 deleterious(0) probably_damaging(0.944) TCGA-ER-A3PL-06 14 74823702 74823702 G A VRTN Silent p.R72R 0.48 TCGA-ER-A3PL-06 14 86089597 86089597 A G FLRT2 Missense_Mutation p.N580S 0.13 tolerated(0.45) benign(0.145) TCGA-ER-A3PL-06 14 90650761 90650761 C T KCNK13 Missense_Mutation p.A214V 0.42 deleterious(0.04) possibly_damaging(0.864) TCGA-ER-A3PL-06 14 91365690 91365690 C T RPS6KA5 Missense_Mutation p.E486K 0.34 deleterious(0.01) possibly_damaging(0.794) TCGA-ER-A3PL-06 14 92268712 92268712 G A TC2N Nonsense_Mutation p.Q119* 0.16 TCGA-ER-A3PL-06 14 97313674 97313674 G A VRK1 Missense_Mutation p.G123R 0.40 deleterious(0) probably_damaging(0.927) TCGA-ER-A3PL-06 15 101528919 101528919 C T LRRK1 Silent p.L172L 0.12 TCGA-ER-A3PL-06 15 25442574 25442574 G A SNORD115-14 3'Flank 0.37 TCGA-ER-A3PL-06 15 25486780 25486780 C T SNORD115-40 5'Flank 0.38 TCGA-ER-A3PL-06 15 34434548 34434548 A C KATNBL1 Missense_Mutation p.L303V 0.29 deleterious(0) probably_damaging(0.996) TCGA-ER-A3PL-06 15 41227212 41227212 G A DLL4 Silent p.E379E 0.20 TCGA-ER-A3PL-06 15 41482192 41482192 C T EXD1 Silent p.V275V 0.19 TCGA-ER-A3PL-06 15 42110405 42110405 C T MAPKBP1 Missense_Mutation p.P671L 0.15 deleterious(0) possibly_damaging(0.882) TCGA-ER-A3PL-06 15 43639285 43639285 T A ADAL Intron 0.10 TCGA-ER-A3PL-06 15 48764858 48764858 G A FBN1 Missense_Mutation p.S1409F 0.12 probably_damaging(0.938) TCGA-ER-A3PL-06 15 65957041 65957041 G A DENND4A Silent p.V1792V 0.10 TCGA-ER-A3PL-06 15 74751147 74751147 G A UBL7 Missense_Mutation p.S21F 0.14 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ER-A3PL-06 15 83224829 83224829 G A CPEB1 Missense_Mutation p.S217L 0.17 tolerated_low_confidence(0.23) benign(0) TCGA-ER-A3PL-06 15 83434050 83434050 C T FSD2 Missense_Mutation p.G563E 0.43 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 15 83935737 83935737 G A BNC1 Missense_Mutation p.L96F 0.38 deleterious(0) probably_damaging(0.999) TCGA-ER-A3PL-06 15 84651654 84651654 G A ADAMTSL3 Missense_Mutation p.D1092N 0.39 deleterious(0.02) possibly_damaging(0.786) TCGA-ER-A3PL-06 15 91352383 91352383 T G BLM Missense_Mutation p.D1256E 0.15 tolerated(0.1) possibly_damaging(0.759) TCGA-ER-A3PL-06 15 91827351 91827351 C T SV2B Silent p.F536F 0.53 TCGA-ER-A3PL-06 16 10996530 10996530 C G CIITA Missense_Mutation p.S215C 0.09 tolerated(0.11) possibly_damaging(0.827) TCGA-ER-A3PL-06 16 14345756 14345756 C T MKL2 Missense_Mutation p.P764L 0.31 tolerated(0.12) possibly_damaging(0.599) TCGA-ER-A3PL-06 16 1504440 1504440 G A CLCN7 Silent p.I375I 0.15 TCGA-ER-A3PL-06 16 1749062 1749062 C T HN1L 3'UTR 0.37 TCGA-ER-A3PL-06 16 19468122 19468122 C T TMC5 Intron 0.31 TCGA-ER-A3PL-06 16 30664295 30664295 C T PRR14 Silent p.S125S 0.26 TCGA-ER-A3PL-06 16 31092700 31092700 C T ZNF646 Silent p.S1685S 0.19 TCGA-ER-A3PL-06 16 3828796 3828796 G A CREBBP Missense_Mutation p.P616S 0.36 probably_damaging(0.996) TCGA-ER-A3PL-06 16 4409354 4409354 G A CORO7 Silent p.L761L 0.17 TCGA-ER-A3PL-06 16 51173657 51173657 C T SALL1 Missense_Mutation p.D826N 0.15 tolerated(0.11) possibly_damaging(0.81) TCGA-ER-A3PL-06 16 58011806 58011806 G A TEPP Missense_Mutation p.R84Q 0.17 tolerated_low_confidence(0.08) benign(0.296) TCGA-ER-A3PL-06 16 67862711 67862711 C T CENPT Missense_Mutation p.R439K 0.15 tolerated(0.25) possibly_damaging(0.636) TCGA-ER-A3PL-06 16 830648 830648 G A MSLNL Missense_Mutation p.P118L 0.48 probably_damaging(0.958) TCGA-ER-A3PL-06 16 84444310 84444310 G A ATP2C2 Missense_Mutation p.E152K 0.22 deleterious(0) possibly_damaging(0.724) TCGA-ER-A3PL-06 16 87678312 87678312 G A JPH3 Silent p.E277E 0.17 TCGA-ER-A3PL-06 16 89657539 89657539 C T CPNE7 Silent p.I466I 0.70 TCGA-ER-A3PL-06 17 10348361 10348361 G A MYH4 Missense_Mutation p.R1800C 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-ER-A3PL-06 17 10356109 10356109 G A MYH4 Silent p.L1084L 0.46 TCGA-ER-A3PL-06 17 10450801 10450801 C T MYH2 Nonsense_Mutation p.W113* 0.40 TCGA-ER-A3PL-06 17 11642247 11642247 C T DNAH9 Silent p.F1955F 0.12 TCGA-ER-A3PL-06 17 12647621 12647621 C T MYOCD Missense_Mutation p.P280L 0.47 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 17 16527755 16527755 C T ZNF624 Missense_Mutation p.E149K 0.14 tolerated(0.81) benign(0) TCGA-ER-A3PL-06 17 18077114 18077114 C T MYO15A Missense_Mutation p.P3457L 0.12 unknown(0) TCGA-ER-A3PL-06 17 2605269 2605269 G A CLUH Silent p.F148F 0.23 TCGA-ER-A3PL-06 17 26851062 26851062 G A FOXN1 Silent p.G25G 0.13 TCGA-ER-A3PL-06 17 31415947 31415947 G A ASIC2 Silent p.F307F 0.11 TCGA-ER-A3PL-06 17 33520801 33520801 C T SLC35G3 Missense_Mutation p.G176R 0.20 deleterious(0.01) possibly_damaging(0.526) TCGA-ER-A3PL-06 17 41020650 41020650 G A AOC4P RNA 0.17 TCGA-ER-A3PL-06 17 41209101 41209101 G A BRCA1 Missense_Mutation p.P1770S 0.26 deleterious(0) benign(0.204) TCGA-ER-A3PL-06 17 41297029 41297029 G A NBR2 3'Flank 0.12 TCGA-ER-A3PL-06 17 42340052 42340052 C T SLC4A1 Missense_Mutation p.E20K 0.48 tolerated(0.51) benign(0.052) TCGA-ER-A3PL-06 17 4726222 4726222 C T PLD2 3'UTR 0.33 TCGA-ER-A3PL-06 17 47788722 47788722 C T FAM117A Silent p.R419R 0.14 TCGA-ER-A3PL-06 17 47788723 47788723 C T FAM117A Missense_Mutation p.R419Q 0.14 tolerated_low_confidence(0.19) benign(0.281) TCGA-ER-A3PL-06 17 4875598 4875598 G A CAMTA2 Missense_Mutation p.L936F 0.12 tolerated(0.35) benign(0.001) TCGA-ER-A3PL-06 17 4875599 4875599 G A CAMTA2 Silent p.A935A 0.12 TCGA-ER-A3PL-06 17 5038536 5038536 G A USP6 Missense_Mutation p.E168K 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.621) TCGA-ER-A3PL-06 17 5039137 5039137 C T USP6 Missense_Mutation p.T193I 0.14 deleterious_low_confidence(0.02) benign(0.001) TCGA-ER-A3PL-06 17 56344821 56344821 G A LPO Missense_Mutation p.G602E 0.26 deleterious(0) probably_damaging(0.911) TCGA-ER-A3PL-06 17 59924472 59924472 G A BRIP1 Missense_Mutation p.S206L 0.35 deleterious(0.02) benign(0.052) TCGA-ER-A3PL-06 17 60768369 60768369 G A MRC2 Missense_Mutation p.G1358S 0.16 tolerated(0.13) benign(0.403) TCGA-ER-A3PL-06 17 66987029 66987029 C T ABCA9 Silent p.Q1262Q 0.23 TCGA-ER-A3PL-06 17 6704190 6704190 G A TEKT1 Missense_Mutation p.P309S 0.15 deleterious(0) possibly_damaging(0.897) TCGA-ER-A3PL-06 17 7256553 7256553 C T KCTD11 Missense_Mutation p.P98S 0.17 tolerated(0.46) possibly_damaging(0.556) TCGA-ER-A3PL-06 17 7365299 7365299 C T ZBTB4 Missense_Mutation p.R1001K 0.10 benign(0.001) TCGA-ER-A3PL-06 17 73658637 73658637 G A RECQL5 Silent p.F231F 0.29 TCGA-ER-A3PL-06 17 74008121 74008121 G T EVPL Missense_Mutation p.S808Y 0.23 tolerated(0.53) benign(0.235) TCGA-ER-A3PL-06 17 80332455 80332455 C T UTS2R Silent p.S85S 0.26 TCGA-ER-A3PL-06 17 8656710 8656710 G A SPDYE4 Missense_Mutation p.H195Y 0.33 tolerated(0.07) possibly_damaging(0.728) TCGA-ER-A3PL-06 18 10471760 10471760 T G APCDD1 Missense_Mutation p.V159G 0.37 deleterious(0) possibly_damaging(0.474) TCGA-ER-A3PL-06 18 11864529 11864529 C T GNAL Intron 0.16 TCGA-ER-A3PL-06 18 3452058 3452058 C T TGIF1 Silent p.S27S 0.51 TCGA-ER-A3PL-06 19 1043227 1043227 C T ABCA7 Missense_Mutation p.S256F 0.49 tolerated(0.06) benign(0.112) TCGA-ER-A3PL-06 19 11289038 11289038 G A KANK2 Silent p.F509F 0.13 TCGA-ER-A3PL-06 19 12721495 12721495 C T ZNF490 5'UTR 0.11 TCGA-ER-A3PL-06 19 12976551 12976551 G A MAST1 Missense_Mutation p.G609R 0.15 deleterious(0) probably_damaging(0.91) TCGA-ER-A3PL-06 19 15198323 15198323 G A OR1I1 Nonsense_Mutation p.W149* 0.20 TCGA-ER-A3PL-06 19 16003245 16003245 C T CYP4F2 Silent p.G133G 0.40 TCGA-ER-A3PL-06 19 18182929 18182929 G A IL12RB1 Silent p.T338T 0.16 TCGA-ER-A3PL-06 19 2211110 2211110 C T DOT1L Missense_Mutation p.S455F 0.36 deleterious(0) possibly_damaging(0.568) TCGA-ER-A3PL-06 19 22939100 22939100 C T ZNF99 3'Flank 0.43 TCGA-ER-A3PL-06 19 33603426 33603426 T G GPATCH1 Missense_Mutation p.M600R 0.15 deleterious(0) possibly_damaging(0.49) TCGA-ER-A3PL-06 19 33603427 33603427 G A GPATCH1 Missense_Mutation p.M600I 0.14 deleterious(0.01) benign(0.387) TCGA-ER-A3PL-06 19 36583618 36583618 G A WDR62 Silent p.P746P 0.16 TCGA-ER-A3PL-06 19 37038281 37038281 G A ZNF529 Silent p.P393P 0.13 TCGA-ER-A3PL-06 19 37975717 37975717 A C ZNF570 Missense_Mutation p.N398T 0.45 tolerated(0.41) probably_damaging(0.989) TCGA-ER-A3PL-06 19 39025783 39025783 G A RYR1 Missense_Mutation p.E3788K 0.15 benign(0.03) TCGA-ER-A3PL-06 19 39913402 39913402 G A PLEKHG2 Missense_Mutation p.G570R 0.16 tolerated_low_confidence(0.29) benign(0.058) TCGA-ER-A3PL-06 19 41765671 41765671 G A AXL Silent p.K849K 0.06 TCGA-ER-A3PL-06 19 42729964 42729964 G A ZNF526 Missense_Mutation p.R470Q 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A3PL-06 19 42813817 42813817 G A PRR19 Silent p.R27R 0.40 TCGA-ER-A3PL-06 19 43098981 43098981 G A CEACAM8 5'UTR 0.34 TCGA-ER-A3PL-06 19 44590472 44590472 C T ZNF284 Missense_Mutation p.H281Y 0.44 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 19 45476362 45476362 C T CLPTM1 Silent p.A68A 0.12 TCGA-ER-A3PL-06 19 45853671 45853671 G A KLC3 Missense_Mutation p.D406N 0.20 tolerated(0.18) benign(0.04) TCGA-ER-A3PL-06 19 46807188 46807188 G A HIF3A Silent p.R20R 0.24 TCGA-ER-A3PL-06 19 48523019 48523019 C T ELSPBP1 Silent p.S133S 0.14 TCGA-ER-A3PL-06 19 49703917 49703917 C T TRPM4 Missense_Mutation p.A943V 0.27 deleterious(0) probably_damaging(0.999) TCGA-ER-A3PL-06 19 49703918 49703918 C T TRPM4 Silent p.A943A 0.27 TCGA-ER-A3PL-06 19 50161586 50161586 C T SCAF1 Missense_Mutation p.P1290L 0.58 unknown(0) TCGA-ER-A3PL-06 19 50209537 50209537 G A CPT1C Missense_Mutation p.A404T 0.14 deleterious(0.04) benign(0.3) TCGA-ER-A3PL-06 19 51200890 51200890 G A SHANK1 Silent p.F631F 0.15 TCGA-ER-A3PL-06 19 51220089 51220089 G A SHANK1 Missense_Mutation p.P30S 0.52 possibly_damaging(0.857) TCGA-ER-A3PL-06 19 51363024 51363024 C T KLK3 Intron 0.67 TCGA-ER-A3PL-06 19 52004708 52004708 G A SIGLEC12 Missense_Mutation p.H94Y 0.37 tolerated(0.32) benign(0.219) TCGA-ER-A3PL-06 19 52663781 52663781 G A ZNF836 Missense_Mutation p.P27S 0.14 tolerated(0.07) probably_damaging(0.992) TCGA-ER-A3PL-06 19 549118 549118 G A GZMM Nonsense_Mutation p.W182* 0.38 TCGA-ER-A3PL-06 19 55451046 55451046 C T NLRP7 Missense_Mutation p.E381K 0.36 deleterious(0) possibly_damaging(0.574) TCGA-ER-A3PL-06 19 56539360 56539360 C T NLRP5 Silent p.L587L 0.10 TCGA-ER-A3PL-06 19 57327326 57327326 C T PEG3 Silent p.R828R 0.12 TCGA-ER-A3PL-06 19 58598280 58598280 G A ZSCAN18 Silent p.L302L 0.09 TCGA-ER-A3PL-06 19 6183189 6183189 C T ACSBG2 Silent p.L410L 0.38 TCGA-ER-A3PL-06 19 7509310 7509310 C T ARHGEF18 Silent p.I339I 0.37 TCGA-ER-A3PL-06 19 7535025 7535025 C T ARHGEF18 Silent p.P1121P 0.16 TCGA-ER-A3PL-06 19 9045922 9045922 G A MUC16 Silent p.S11903S 0.49 TCGA-ER-A3PL-06 19 9057895 9057895 C T MUC16 Missense_Mutation p.D9851N 0.09 unknown(0) TCGA-ER-A3PL-06 19 9058191 9058191 G A MUC16 Missense_Mutation p.S9752F 0.18 unknown(0) TCGA-ER-A3PL-06 19 9063438 9063438 G A MUC16 Missense_Mutation p.S8003L 0.15 unknown(0) TCGA-ER-A3PL-06 19 9065406 9065406 G A MUC16 Missense_Mutation p.T7347I 0.51 unknown(0) TCGA-ER-A3PL-06 19 9324798 9324798 G A OR7D4 Missense_Mutation p.S239F 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A3PL-06 1 109271407 109271407 C T FNDC7 Missense_Mutation p.T508I 0.17 tolerated(0.16) benign(0.005) TCGA-ER-A3PL-06 1 114201748 114201748 C T MAGI3 Silent p.D892D 0.10 TCGA-ER-A3PL-06 1 114680389 114680389 G A SYT6 Missense_Mutation p.P182S 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 1 12343332 12343332 C T VPS13D Missense_Mutation p.L1725F 0.18 probably_damaging(0.965) TCGA-ER-A3PL-06 1 142713786 142713786 C T RP11-417J8.6 RNA 0.44 TCGA-ER-A3PL-06 1 150960629 150960629 C T ANXA9 Missense_Mutation p.H254Y 0.13 deleterious(0.03) benign(0.006) TCGA-ER-A3PL-06 1 152784986 152784986 C T LCE1B Missense_Mutation p.P22S 0.22 tolerated_low_confidence(0.33) unknown(0) TCGA-ER-A3PL-06 1 156571260 156571260 C T GPATCH4 5'UTR 0.53 TCGA-ER-A3PL-06 1 159162365 159162365 C T CADM3 Intron 0.28 TCGA-ER-A3PL-06 1 159847208 159847208 C T CCDC19 Silent p.R363R 0.13 TCGA-ER-A3PL-06 1 160011274 160011274 C T KCNJ10 Missense_Mutation p.G350E 0.09 tolerated(0.44) benign(0.216) TCGA-ER-A3PL-06 1 16074180 16074180 G A TMEM82 3'UTR 0.81 TCGA-ER-A3PL-06 1 162351847 162351847 G A RP11-565P22.6 Silent p.K161K 0.23 TCGA-ER-A3PL-06 1 163307841 163307841 A T NUF2 Missense_Mutation p.N156I 0.19 tolerated(0.12) benign(0.124) TCGA-ER-A3PL-06 1 163307842 163307842 C T NUF2 Silent p.N156N 0.19 TCGA-ER-A3PL-06 1 170959143 170959143 G A MROH9 Missense_Mutation p.D343N 0.26 tolerated(1) benign(0.003) TCGA-ER-A3PL-06 1 171178045 171178045 C T FMO2 Missense_Mutation p.P457S 0.24 deleterious(0) probably_damaging(0.968) TCGA-ER-A3PL-06 1 178490266 178490266 C T TEX35 Intron 0.15 TCGA-ER-A3PL-06 1 181706660 181706660 G A CACNA1E Splice_Site p.X1141_splice 0.26 TCGA-ER-A3PL-06 1 197008438 197008438 C T F13B 3'UTR 0.24 TCGA-ER-A3PL-06 1 200950211 200950211 G A KIF21B Missense_Mutation p.P1286S 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-ER-A3PL-06 1 204167457 204167457 C T GOLT1A 3'UTR 0.15 TCGA-ER-A3PL-06 1 204985598 204985598 G A NFASC Silent p.K1218K 0.13 TCGA-ER-A3PL-06 1 204985599 204985599 G A NFASC Missense_Mutation p.E1219K 0.13 deleterious(0.01) unknown(0) TCGA-ER-A3PL-06 1 206821272 206821272 G A DYRK3 Silent p.E243E 0.09 TCGA-ER-A3PL-06 1 216496828 216496828 G A USH2A Missense_Mutation p.T513I 0.63 possibly_damaging(0.58) TCGA-ER-A3PL-06 1 223176830 223176830 C T DISP1 Silent p.A697A 0.09 TCGA-ER-A3PL-06 1 228487685 228487685 G A OBSCN Nonsense_Mutation p.W4526* 0.10 TCGA-ER-A3PL-06 1 233334685 233334685 C T PCNXL2 Silent p.K1022K 0.33 TCGA-ER-A3PL-06 1 235860390 235860390 C T LYST Silent p.K3519K 0.11 TCGA-ER-A3PL-06 1 237955555 237955555 T C RYR2 Silent p.L4572L 0.17 TCGA-ER-A3PL-06 1 247014101 247014101 G A AHCTF1 Missense_Mutation p.S1745F 0.12 deleterious(0) possibly_damaging(0.898) TCGA-ER-A3PL-06 1 27224157 27224157 C T GPATCH3 Missense_Mutation p.E171K 0.18 deleterious(0.04) benign(0.008) TCGA-ER-A3PL-06 1 38305672 38305672 G A MTF1 Silent p.I189I 0.56 TCGA-ER-A3PL-06 1 43647461 43647461 G A WDR65 Nonsense_Mutation p.W138* 0.87 TCGA-ER-A3PL-06 1 44443857 44443857 G T ATP6V0B 3'UTR 0.93 TCGA-ER-A3PL-06 1 47564916 47564916 G A CYP4Z1 Missense_Mutation p.E343K 0.19 deleterious(0) possibly_damaging(0.874) TCGA-ER-A3PL-06 1 54360019 54360019 G A DIO1 Missense_Mutation p.E46K 0.60 deleterious(0.04) benign(0.05) TCGA-ER-A3PL-06 1 55341714 55341714 G A DHCR24 Missense_Mutation p.R132C 0.90 deleterious(0.02) benign(0.038) TCGA-ER-A3PL-06 1 75097586 75097586 C T C1orf173 Silent p.R210R 0.20 TCGA-ER-A3PL-06 1 75672358 75672358 G A SLC44A5 Silent p.F698F 0.12 TCGA-ER-A3PL-06 1 89733188 89733188 G A GBP5 Nonsense_Mutation p.Q114* 0.84 TCGA-ER-A3PL-06 20 1559236 1559236 G A RP4-576H24.4 Missense_Mutation p.P60S 0.30 deleterious(0) possibly_damaging(0.885) TCGA-ER-A3PL-06 20 1638365 1638365 G A SIRPG 5'UTR 0.71 TCGA-ER-A3PL-06 20 26084283 26084283 C T NCOR1P1 RNA 0.05 TCGA-ER-A3PL-06 20 29847392 29847392 C T DEFB115 Missense_Mutation p.S75L 0.47 tolerated(0.44) benign(0.001) TCGA-ER-A3PL-06 20 30784501 30784501 G A PLAGL2 Silent p.S415S 0.10 TCGA-ER-A3PL-06 20 34775677 34775677 C T EPB41L1 Missense_Mutation p.H289Y 0.10 deleterious(0) possibly_damaging(0.89) TCGA-ER-A3PL-06 20 36870278 36870278 C T KIAA1755 Silent p.R85R 0.26 TCGA-ER-A3PL-06 20 37154605 37154605 C T RALGAPB Missense_Mutation p.S657F 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-ER-A3PL-06 20 40944419 40944419 G A PTPRT Missense_Mutation p.L695F 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-ER-A3PL-06 20 47989762 47989762 G A KCNB1 Missense_Mutation p.P779S 0.08 tolerated_low_confidence(0.73) benign(0.002) TCGA-ER-A3PL-06 20 61528272 61528272 G A DIDO1 Silent p.S555S 0.12 TCGA-ER-A3PL-06 20 61981006 61981006 G A CHRNA4 Missense_Mutation p.S586L 0.06 deleterious(0.01) possibly_damaging(0.821) TCGA-ER-A3PL-06 20 62321443 62321443 C T RTEL1 Silent p.F739F 0.10 TCGA-ER-A3PL-06 20 62729381 62729381 C T OPRL1 Missense_Mutation p.H154Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-ER-A3PL-06 21 14417516 14417516 G A RNU6-614P 5'Flank 0.10 TCGA-ER-A3PL-06 21 30365231 30365231 C T LTN1 Missense_Mutation p.G12R 0.50 deleterious_low_confidence(0) unknown(0) TCGA-ER-A3PL-06 21 43542950 43542950 C T UMODL1 Missense_Mutation p.P1074L 0.17 tolerated(0.26) possibly_damaging(0.851) TCGA-ER-A3PL-06 22 16287555 16287555 C T POTEH Missense_Mutation p.G111R 0.28 tolerated_low_confidence(0.17) benign(0.118) TCGA-ER-A3PL-06 22 17071881 17071881 G A CCT8L2 Silent p.I520I 0.17 TCGA-ER-A3PL-06 22 17688077 17688077 C T CECR1 Silent p.G142G 0.17 TCGA-ER-A3PL-06 22 19502294 19502294 C T CDC45 Missense_Mutation p.H446Y 0.40 deleterious(0.04) benign(0) TCGA-ER-A3PL-06 22 20129012 20129012 C T ZDHHC8 Missense_Mutation p.P362S 0.10 tolerated(1) benign(0.001) TCGA-ER-A3PL-06 22 24583182 24583182 C T SUSD2 Missense_Mutation p.S552L 0.57 tolerated(0.63) possibly_damaging(0.845) TCGA-ER-A3PL-06 22 24891394 24891394 C T UPB1 Missense_Mutation p.S8L 0.36 deleterious(0) possibly_damaging(0.859) TCGA-ER-A3PL-06 22 26224808 26224808 A G MYO18B Missense_Mutation p.N951S 0.14 tolerated(0.09) possibly_damaging(0.534) TCGA-ER-A3PL-06 22 26422649 26422649 C T MYO18B Missense_Mutation p.P2237S 0.22 deleterious(0.02) possibly_damaging(0.833) TCGA-ER-A3PL-06 22 29834671 29834671 C T RFPL1 5'UTR 0.18 TCGA-ER-A3PL-06 22 30891350 30891350 G A SEC14L4 Missense_Mutation p.S105F 0.57 tolerated(0.15) possibly_damaging(0.516) TCGA-ER-A3PL-06 22 31672907 31672907 C T LIMK2 Silent p.I614I 0.12 TCGA-ER-A3PL-06 22 39122148 39122148 C T GTPBP1 Missense_Mutation p.S404F 0.22 deleterious(0.03) possibly_damaging(0.862) TCGA-ER-A3PL-06 22 42141921 42141921 C T MEI1 Missense_Mutation p.A524V 0.12 tolerated(0.45) probably_damaging(0.973) TCGA-ER-A3PL-06 22 42141922 42141922 C T MEI1 Silent p.A524A 0.13 TCGA-ER-A3PL-06 22 44030985 44030985 C T EFCAB6 Missense_Mutation p.E699K 0.33 tolerated(0.08) benign(0.209) TCGA-ER-A3PL-06 22 50488593 50488593 G A TTLL8 Silent p.F81F 0.19 TCGA-ER-A3PL-06 22 51063771 51063771 C A ARSA Silent p.L444L 0.23 TCGA-ER-A3PL-06 2 108875248 108875248 C T SULT1C3 Silent p.H195H 0.23 TCGA-ER-A3PL-06 2 113780266 113780266 C T IL36B Missense_Mutation p.M160I 0.57 deleterious_low_confidence(0) benign(0.216) TCGA-ER-A3PL-06 2 1271344 1271344 G A SNTG2 Splice_Site p.X428_splice 0.18 TCGA-ER-A3PL-06 2 133543206 133543206 G A NCKAP5 Missense_Mutation p.P393L 0.31 tolerated(0.05) possibly_damaging(0.455) TCGA-ER-A3PL-06 2 141215151 141215151 C T LRP1B Missense_Mutation p.G3232E 0.66 probably_damaging(0.931) TCGA-ER-A3PL-06 2 160139344 160139344 G T WDSUB1 Silent p.V79V 0.26 TCGA-ER-A3PL-06 2 166201247 166201247 C T SCN2A Silent p.S915S 0.17 TCGA-ER-A3PL-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.27 TCGA-ER-A3PL-06 2 171804873 171804873 C T GORASP2 Missense_Mutation p.S26F 0.71 deleterious(0) possibly_damaging(0.656) TCGA-ER-A3PL-06 2 179407584 179407584 G A TTN Missense_Mutation p.R32333C 0.20 TCGA-ER-A3PL-06 2 179588836 179588836 C T TTN Silent p.L7050L 0.12 TCGA-ER-A3PL-06 2 179701959 179701959 C T CCDC141 Silent p.E1329E 0.27 TCGA-ER-A3PL-06 2 182402931 182402931 C T CERKL Missense_Mutation p.E553K 0.16 deleterious(0.01) possibly_damaging(0.589) TCGA-ER-A3PL-06 2 185801778 185801778 C T ZNF804A Missense_Mutation p.S552F 0.82 deleterious(0) probably_damaging(0.986) TCGA-ER-A3PL-06 2 185803862 185803862 G A ZNF804A 3'UTR 0.18 TCGA-ER-A3PL-06 2 207427000 207427000 C T ADAM23 Missense_Mutation p.P443L 0.64 tolerated(0.11) probably_damaging(0.975) TCGA-ER-A3PL-06 2 210557805 210557805 G A MAP2 Nonsense_Mutation p.W304* 0.22 TCGA-ER-A3PL-06 2 21247973 21247973 G A APOB Silent p.L756L 0.10 TCGA-ER-A3PL-06 2 219603529 219603529 G A TTLL4 Missense_Mutation p.R377K 0.21 tolerated(0.46) benign(0.08) TCGA-ER-A3PL-06 2 238243356 238243356 G A COL6A3 Silent p.L3048L 0.26 TCGA-ER-A3PL-06 2 240969789 240969789 C T OR6B2 Missense_Mutation p.A20T 0.23 tolerated(0.48) benign(0.003) TCGA-ER-A3PL-06 2 242021766 242021766 G A SNED1 Missense_Mutation p.V1370I 0.05 tolerated(0.24) benign(0.005) TCGA-ER-A3PL-06 2 24518562 24518562 C T ITSN2 Missense_Mutation p.E536K 0.61 deleterious(0) unknown(0) TCGA-ER-A3PL-06 2 50847285 50847285 C T NRXN1 Missense_Mutation p.G439S 0.63 tolerated(0.14) probably_damaging(0.986) TCGA-ER-A3PL-06 2 64683565 64683565 C T LGALSL Missense_Mutation p.P114L 0.26 deleterious(0) possibly_damaging(0.862) TCGA-ER-A3PL-06 2 74043101 74043101 C T C2orf78 Missense_Mutation p.S584F 0.27 deleterious(0) possibly_damaging(0.648) TCGA-ER-A3PL-06 2 74593064 74593064 G A DCTN1 Nonsense_Mutation p.R948* 0.22 TCGA-ER-A3PL-06 2 74760229 74760229 C T HTRA2 3'UTR 0.69 TCGA-ER-A3PL-06 2 88071712 88071712 C T RGPD2 Missense_Mutation p.G1738R 0.29 deleterious_low_confidence(0) benign(0) TCGA-ER-A3PL-06 2 96936907 96936907 C T CIAO1 Nonsense_Mutation p.Q280* 0.18 TCGA-ER-A3PL-06 3 113775239 113775239 C T KIAA1407 Silent p.R25R 0.15 TCGA-ER-A3PL-06 3 121724190 121724190 C T ILDR1 Missense_Mutation p.D94N 0.15 deleterious(0) probably_damaging(0.99) TCGA-ER-A3PL-06 3 126220688 126220688 C T UROC1 Missense_Mutation p.E336K 0.16 tolerated(0.14) benign(0.001) TCGA-ER-A3PL-06 3 128077182 128077182 C T EEFSEC Silent p.F522F 0.35 TCGA-ER-A3PL-06 3 128127242 128127242 C T EEFSEC 3'UTR 0.20 TCGA-ER-A3PL-06 3 129195306 129195306 C T IFT122 Missense_Mutation p.S373F 0.12 deleterious(0) probably_damaging(0.919) TCGA-ER-A3PL-06 3 130187919 130187919 G A COL6A5 Silent p.L2357L 0.75 TCGA-ER-A3PL-06 3 131624122 131624122 C T CPNE4 Missense_Mutation p.G56R 0.17 deleterious(0.03) probably_damaging(1) TCGA-ER-A3PL-06 3 14177346 14177346 C T TMEM43 Missense_Mutation p.P274S 0.18 tolerated(0.38) benign(0.011) TCGA-ER-A3PL-06 3 151165546 151165546 C T IGSF10 Silent p.R741R 0.40 TCGA-ER-A3PL-06 3 171377080 171377080 G A PLD1 Silent p.F784F 0.17 TCGA-ER-A3PL-06 3 194790594 194790594 G A XXYLT1 Silent p.L344L 0.78 TCGA-ER-A3PL-06 3 195965607 195965607 G A PCYT1A Silent p.S352S 0.10 TCGA-ER-A3PL-06 3 38048558 38048558 C T VILL 3'UTR 0.62 TCGA-ER-A3PL-06 3 39166621 39166621 G A TTC21A Silent p.K395K 0.14 TCGA-ER-A3PL-06 3 42244009 42244009 C T TRAK1 Silent p.S503S 0.62 TCGA-ER-A3PL-06 3 4354724 4354724 C T SETMAR Missense_Mutation p.S100L 0.16 tolerated_low_confidence(0.53) benign(0.042) TCGA-ER-A3PL-06 3 46399001 46399001 C T CCR2 5'UTR 0.57 TCGA-ER-A3PL-06 3 46415394 46415394 G A CCR5 Missense_Mutation p.R334Q 0.33 deleterious(0.03) benign(0.135) TCGA-ER-A3PL-06 3 47462238 47462238 G T SCAP Missense_Mutation p.P457T 0.22 deleterious(0.01) benign(0.374) TCGA-ER-A3PL-06 3 48658389 48658389 G A TMEM89 Silent p.L122L 0.15 TCGA-ER-A3PL-06 3 49095151 49095151 G A QRICH1 Missense_Mutation p.P161L 0.28 deleterious_low_confidence(0.03) benign(0.003) TCGA-ER-A3PL-06 3 49311591 49311591 G A C3orf62 Intron 0.20 TCGA-ER-A3PL-06 3 65372878 65372878 C T MAGI1 Intron 0.26 TCGA-ER-A3PL-06 4 100463150 100463150 C T C4orf17 Missense_Mutation p.P322S 0.45 tolerated(0.17) possibly_damaging(0.527) TCGA-ER-A3PL-06 4 102981430 102981430 G A BANK1 Missense_Mutation p.E678K 0.45 deleterious(0) possibly_damaging(0.721) TCGA-ER-A3PL-06 4 106863676 106863676 C T NPNT Missense_Mutation p.P356S 0.41 tolerated(0.09) possibly_damaging(0.723) TCGA-ER-A3PL-06 4 138452050 138452050 T C PCDH18 Missense_Mutation p.K398R 0.11 tolerated(1) benign(0.012) TCGA-ER-A3PL-06 4 174448405 174448405 C T HAND2 3'UTR 0.25 TCGA-ER-A3PL-06 4 187455692 187455692 G A MTNR1A Silent p.S68S 0.40 TCGA-ER-A3PL-06 4 37590493 37590493 G A C4orf19 Missense_Mutation p.G2R 0.14 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 4 40045124 40045124 C T RP11-333E13.4 RNA 0.37 TCGA-ER-A3PL-06 4 42629073 42629073 C T ATP8A1 Missense_Mutation p.E35K 0.31 tolerated(0.31) benign(0.079) TCGA-ER-A3PL-06 4 84194714 84194714 G A COQ2 Silent p.S209S 0.29 TCGA-ER-A3PL-06 4 84519319 84519319 C T AGPAT9 Missense_Mutation p.P371L 0.11 deleterious(0) possibly_damaging(0.651) TCGA-ER-A3PL-06 5 101593755 101593755 G A SLCO4C1 Silent p.L389L 0.42 TCGA-ER-A3PL-06 5 101834273 101834273 G A SLCO6A1 Silent p.G92G 0.11 TCGA-ER-A3PL-06 5 115783141 115783141 G A SEMA6A Missense_Mutation p.A754V 0.46 tolerated(0.07) probably_damaging(0.998) TCGA-ER-A3PL-06 5 137680685 137680685 C T FAM53C Missense_Mutation p.P103L 0.14 tolerated(0.41) benign(0) TCGA-ER-A3PL-06 5 13864629 13864629 C T DNAH5 Missense_Mutation p.M1491I 0.49 benign(0.072) TCGA-ER-A3PL-06 5 13868073 13868073 C T DNAH5 Missense_Mutation p.G1288E 0.07 benign(0.004) TCGA-ER-A3PL-06 5 13868074 13868074 C T DNAH5 Missense_Mutation p.G1288R 0.07 benign(0) TCGA-ER-A3PL-06 5 140202746 140202746 C T PCDHA5 Silent p.F462F 0.15 TCGA-ER-A3PL-06 5 140208462 140208462 C T PCDHA6 Silent p.I262I 0.44 TCGA-ER-A3PL-06 5 140262989 140262989 C T PCDHA13 Missense_Mutation p.S379F 0.45 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-ER-A3PL-06 5 140307701 140307701 C T PCDHAC1 Silent p.I408I 0.09 TCGA-ER-A3PL-06 5 140432905 140432905 C T PCDHB1 Missense_Mutation p.S617F 0.07 tolerated(0.06) benign(0.043) TCGA-ER-A3PL-06 5 140481738 140481738 C T PCDHB3 Missense_Mutation p.S502F 0.14 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-ER-A3PL-06 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.49 tolerated_low_confidence(0.23) benign(0.002) TCGA-ER-A3PL-06 5 145719650 145719650 G A POU4F3 Silent p.V220V 0.20 TCGA-ER-A3PL-06 5 150701675 150701675 G A SLC36A2 Missense_Mutation p.S371F 0.14 deleterious(0.03) benign(0.371) TCGA-ER-A3PL-06 5 154396877 154396877 G A KIF4B Missense_Mutation p.G1153E 0.07 tolerated_low_confidence(0.11) benign(0.049) TCGA-ER-A3PL-06 5 167626914 167626914 C T TENM2 Missense_Mutation p.R1070C 0.20 tolerated(0.24) benign(0) TCGA-ER-A3PL-06 5 176309025 176309025 C T HK3 Silent p.G719G 0.42 TCGA-ER-A3PL-06 5 37364477 37364477 G A NUP155 Missense_Mutation p.T56I 0.09 deleterious(0.03) benign(0.14) TCGA-ER-A3PL-06 5 45303830 45303830 G A HCN1 Nonsense_Mutation p.Q497* 0.19 TCGA-ER-A3PL-06 5 63256524 63256524 C T HTR1A Silent p.R341R 0.46 TCGA-ER-A3PL-06 5 82833505 82833505 C T VCAN Silent p.A1561A 0.17 TCGA-ER-A3PL-06 5 93859644 93859644 G A KIAA0825 Silent p.F97F 0.17 TCGA-ER-A3PL-06 6 100054868 100054868 G A PRDM13 5'UTR 0.31 TCGA-ER-A3PL-06 6 100395693 100395693 C T MCHR2 Missense_Mutation p.D113N 0.26 deleterious(0.01) probably_damaging(1) TCGA-ER-A3PL-06 6 151672175 151672175 G A AKAP12 Silent p.E883E 0.64 TCGA-ER-A3PL-06 6 155761095 155761095 C T NOX3 Silent p.G221G 0.39 TCGA-ER-A3PL-06 6 158066850 158066850 C T ZDHHC14 Silent p.S278S 0.11 TCGA-ER-A3PL-06 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.24 TCGA-ER-A3PL-06 6 168440778 168440778 C T KIF25 Silent p.L176L 0.15 TCGA-ER-A3PL-06 6 169067234 169067234 A T SMOC2 3'UTR 0.24 TCGA-ER-A3PL-06 6 27835041 27835041 G A HIST1H1B Silent p.S89S 0.74 TCGA-ER-A3PL-06 6 29323426 29323426 G A OR5V1 Missense_Mutation p.P183S 0.13 deleterious(0.01) probably_damaging(1) TCGA-ER-A3PL-06 6 31659451 31659451 C A ABHD16A Missense_Mutation p.G250W 0.11 deleterious(0) probably_damaging(0.993) TCGA-ER-A3PL-06 6 31659452 31659452 A G ABHD16A Silent p.N249N 0.12 TCGA-ER-A3PL-06 6 31774599 31774599 G A LSM2 5'UTR 0.40 TCGA-ER-A3PL-06 6 3284208 3284208 C T SLC22A23 Silent p.G527G 0.17 TCGA-ER-A3PL-06 6 32846988 32846988 C T PPP1R2P1 3'Flank 0.27 TCGA-ER-A3PL-06 6 33036887 33036887 G A HLA-DPA1 Silent p.F179F 0.11 TCGA-ER-A3PL-06 6 33653892 33653892 C T ITPR3 Silent p.F1910F 0.17 TCGA-ER-A3PL-06 6 43111338 43111338 C T PTK7 Missense_Mutation p.P752L 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-ER-A3PL-06 6 49578835 49578835 C T RHAG Silent p.R323R 0.04 TCGA-ER-A3PL-06 6 76731877 76731877 C T IMPG1 Missense_Mutation p.E208K 0.43 tolerated(0.13) benign(0.016) TCGA-ER-A3PL-06 6 96651947 96651947 G A FUT9 Missense_Mutation p.D306N 0.43 deleterious(0.03) possibly_damaging(0.573) TCGA-ER-A3PL-06 6 99850430 99850430 T C PNISR Missense_Mutation p.D438G 0.06 deleterious(0.02) possibly_damaging(0.795) TCGA-ER-A3PL-06 7 100551905 100551905 G A MUC3A Missense_Mutation p.G219E 0.13 tolerated(0.37) probably_damaging(0.972) TCGA-ER-A3PL-06 7 100663452 100663452 G A MUC17 Silent p.L12L 0.59 TCGA-ER-A3PL-06 7 100677960 100677960 G A MUC17 Missense_Mutation p.G1088D 0.14 benign(0.189) TCGA-ER-A3PL-06 7 117246754 117246754 G A CFTR Missense_Mutation p.D979N 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-ER-A3PL-06 7 120614907 120614907 C T ING3 3'UTR 0.48 TCGA-ER-A3PL-06 7 128489578 128489578 C T FLNC Silent p.V1715V 0.29 TCGA-ER-A3PL-06 7 134878093 134878093 G A WDR91 Missense_Mutation p.P517S 0.10 tolerated(0.78) benign(0.002) TCGA-ER-A3PL-06 7 134889048 134889048 G A WDR91 Missense_Mutation p.S288L 0.24 tolerated(0.29) benign(0.002) TCGA-ER-A3PL-06 7 134896290 134896290 G A WDR91 5'Flank 0.60 TCGA-ER-A3PL-06 7 138268672 138268672 C T TRIM24 Silent p.S957S 0.38 TCGA-ER-A3PL-06 7 138854082 138854082 A T TTC26 Silent p.G351G 0.04 TCGA-ER-A3PL-06 7 139655340 139655340 C T TBXAS1 Missense_Mutation p.P255S 0.09 deleterious(0) probably_damaging(0.982) TCGA-ER-A3PL-06 7 140453135 140453135 C T BRAF Silent p.V600V 0.64 TCGA-ER-A3PL-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.64 deleterious(0) probably_damaging(0.967) TCGA-ER-A3PL-06 7 142651365 142651365 G A KEL Missense_Mutation p.S277F 0.07 tolerated(0.09) benign(0.108) TCGA-ER-A3PL-06 7 143054427 143054427 C T FAM131B Missense_Mutation p.E186K 0.07 tolerated(0.05) possibly_damaging(0.716) TCGA-ER-A3PL-06 7 143657641 143657641 C T OR2F1 Missense_Mutation p.S193F 0.45 tolerated(0.3) benign(0.25) TCGA-ER-A3PL-06 7 147092834 147092834 C T CNTNAP2 Silent p.F544F 0.08 TCGA-ER-A3PL-06 7 1474274 1474274 G A MICALL2 Silent p.S891S 0.11 TCGA-ER-A3PL-06 7 149544949 149544949 G A ZNF862 Missense_Mutation p.E123K 0.75 tolerated_low_confidence(0.07) benign(0.002) TCGA-ER-A3PL-06 7 150174696 150174696 C T GIMAP8 Missense_Mutation p.A609V 0.11 tolerated(0.11) possibly_damaging(0.817) TCGA-ER-A3PL-06 7 150325003 150325003 C T GIMAP6 Missense_Mutation p.G228E 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-ER-A3PL-06 7 150439945 150439945 G A GIMAP5 Missense_Mutation p.E240K 0.19 deleterious(0.01) possibly_damaging(0.806) TCGA-ER-A3PL-06 7 150936093 150936093 C T SMARCD3 3'UTR 0.30 TCGA-ER-A3PL-06 7 151854957 151854957 G A KMT2C Intron 0.12 TCGA-ER-A3PL-06 7 151854958 151854958 T C KMT2C Intron 0.13 TCGA-ER-A3PL-06 7 156516853 156516853 G A LMBR1 Missense_Mutation p.S393F 0.14 tolerated(0.13) probably_damaging(0.999) TCGA-ER-A3PL-06 7 21913063 21913063 G A DNAH11 Missense_Mutation p.E4054K 0.08 probably_damaging(0.999) TCGA-ER-A3PL-06 7 27134238 27134238 A G HOXA1 Missense_Mutation p.F277L 0.30 deleterious(0) probably_damaging(0.916) TCGA-ER-A3PL-06 7 28848902 28848902 C T CREB5 Silent p.D375D 0.20 TCGA-ER-A3PL-06 7 2946142 2946142 G A CARD11 3'UTR 0.10 TCGA-ER-A3PL-06 7 38725356 38725356 C T FAM183B Missense_Mutation p.E84K 0.38 tolerated(0.09) possibly_damaging(0.767) TCGA-ER-A3PL-06 7 45115434 45115434 C T CCM2 Silent p.T392T 0.41 TCGA-ER-A3PL-06 7 4839105 4839105 G A RADIL Silent p.D1044D 0.08 TCGA-ER-A3PL-06 7 48556389 48556389 C T ABCA13 Missense_Mutation p.S4570F 0.54 probably_damaging(0.997) TCGA-ER-A3PL-06 7 50680500 50680500 A G GRB10 Silent p.L378L 0.17 TCGA-ER-A3PL-06 7 63721281 63721281 G T ZNF679 Missense_Mutation p.R79I 0.07 tolerated(0.08) possibly_damaging(0.77) TCGA-ER-A3PL-06 7 69064838 69064838 C T AUTS2 Missense_Mutation p.P67S 0.37 tolerated_low_confidence(0.28) benign(0.426) TCGA-ER-A3PL-06 7 76062786 76062786 G A ZP3 Splice_Site p.X179_splice 0.16 TCGA-ER-A3PL-06 7 82579458 82579458 C T PCLO Nonsense_Mutation p.W3482* 0.49 TCGA-ER-A3PL-06 7 82580577 82580577 G A PCLO Silent p.S3109S 0.41 TCGA-ER-A3PL-06 7 92762825 92762825 G A SAMD9L Silent p.S820S 0.32 TCGA-ER-A3PL-06 7 92762826 92762826 G A SAMD9L Missense_Mutation p.S820F 0.31 tolerated(0.07) benign(0.047) TCGA-ER-A3PL-06 7 94053707 94053707 C T COL1A2 Silent p.L875L 0.09 TCGA-ER-A3PL-06 7 99521204 99521204 C T GJC3 Silent p.Q268Q 0.12 TCGA-ER-A3PL-06 7 99795441 99795441 G A STAG3 Missense_Mutation p.G369E 0.34 deleterious(0.03) benign(0.041) TCGA-ER-A3PL-06 8 101117654 101117654 T C RGS22 Intron 0.19 TCGA-ER-A3PL-06 8 10469463 10469463 G A RP1L1 Silent p.A715A 0.27 TCGA-ER-A3PL-06 8 10480351 10480351 C T RP1L1 Missense_Mutation p.E121K 0.21 benign(0.316) TCGA-ER-A3PL-06 8 108970494 108970494 C T RSPO2 Missense_Mutation p.G144R 0.26 tolerated(0.07) probably_damaging(0.994) TCGA-ER-A3PL-06 8 113395856 113395856 C T CSMD3 Missense_Mutation p.D1991N 0.31 deleterious(0) probably_damaging(0.992) TCGA-ER-A3PL-06 8 124792284 124792284 C T FAM91A1 Silent p.L203L 0.28 TCGA-ER-A3PL-06 8 124818423 124818423 C T FAM91A1 Silent p.S662S 0.44 TCGA-ER-A3PL-06 8 133044233 133044233 C T OC90 Missense_Mutation p.G309E 0.31 deleterious(0) probably_damaging(0.993) TCGA-ER-A3PL-06 8 133882003 133882003 C T TG Missense_Mutation p.S69F 0.46 tolerated(0.1) benign(0.089) TCGA-ER-A3PL-06 8 144808695 144808695 C T FAM83H Missense_Mutation p.R979Q 0.18 deleterious(0.02) possibly_damaging(0.494) TCGA-ER-A3PL-06 8 144946027 144946027 G A EPPK1 Silent p.F465F 0.21 TCGA-ER-A3PL-06 8 15967687 15967687 C T MSR1 Silent p.G421G 0.39 TCGA-ER-A3PL-06 8 17055909 17055909 C T ZDHHC2 Missense_Mutation p.H155Y 0.22 deleterious(0) probably_damaging(0.959) TCGA-ER-A3PL-06 8 1905370 1905370 C T ARHGEF10 Missense_Mutation p.H1326Y 0.40 deleterious(0.03) benign(0.3) TCGA-ER-A3PL-06 8 24349415 24349415 G A ADAM7 Splice_Site p.X453_splice 0.40 TCGA-ER-A3PL-06 8 28997994 28997994 C T KIF13B Silent p.Q825Q 0.22 TCGA-ER-A3PL-06 8 2976069 2976069 C T CSMD1 Silent p.Q2094Q 0.37 TCGA-ER-A3PL-06 8 42586852 42586852 C T CHRNB3 Silent p.I134I 0.18 TCGA-ER-A3PL-06 8 61757427 61757427 G A CHD7 Missense_Mutation p.G1619R 0.35 probably_damaging(0.999) TCGA-ER-A3PL-06 8 61757428 61757428 G A CHD7 Missense_Mutation p.G1619E 0.38 probably_damaging(0.999) TCGA-ER-A3PL-06 8 6690364 6690364 G A GS1-24F4.2 5'Flank 0.42 TCGA-ER-A3PL-06 8 69030872 69030872 G A PREX2 Missense_Mutation p.M1138I 0.32 deleterious(0) benign(0.057) TCGA-ER-A3PL-06 8 71593241 71593241 C T XKR9 5'UTR 0.34 TCGA-ER-A3PL-06 8 8234291 8234291 G A SGK223 Missense_Mutation p.P543L 0.12 probably_damaging(0.997) TCGA-ER-A3PL-06 8 8234850 8234850 G A SGK223 Missense_Mutation p.P357S 0.46 benign(0.241) TCGA-ER-A3PL-06 9 100919807 100919807 G A CORO2A Missense_Mutation p.H46Y 0.26 tolerated(0.06) benign(0.003) TCGA-ER-A3PL-06 9 107266870 107266870 C T OR13F1 Silent p.S109S 0.15 TCGA-ER-A3PL-06 9 113163263 113163263 G A SVEP1 Silent p.F3231F 0.74 TCGA-ER-A3PL-06 9 119124927 119124927 C A PAPPA Missense_Mutation p.F1468L 0.16 tolerated(0.06) benign(0.418) TCGA-ER-A3PL-06 9 120475079 120475079 G A TLR4 Missense_Mutation p.E225K 0.21 tolerated(0.74) benign(0.003) TCGA-ER-A3PL-06 9 120476223 120476223 G A TLR4 Missense_Mutation p.R606Q 0.14 tolerated(0.74) benign(0) TCGA-ER-A3PL-06 9 123924522 123924522 G A CNTRL Nonsense_Mutation p.W1799* 0.23 TCGA-ER-A3PL-06 9 125288712 125288712 G A OR1N1 Silent p.I287I 0.62 TCGA-ER-A3PL-06 9 131008774 131008774 G A DNM1 Silent p.T591T 0.20 TCGA-ER-A3PL-06 9 131019928 131019928 C T GOLGA2 Silent p.E863E 0.67 TCGA-ER-A3PL-06 9 136314964 136314964 C T ADAMTS13 Silent p.I974I 0.19 TCGA-ER-A3PL-06 9 137600460 137600460 C T COL5A1 Intron 0.74 TCGA-ER-A3PL-06 9 139906601 139906601 G A ABCA2 Silent p.T1771T 0.54 TCGA-ER-A3PL-06 9 140946619 140946619 C T CACNA1B Silent p.I1262I 0.18 TCGA-ER-A3PL-06 9 2161812 2161812 C T SMARCA2 Missense_Mutation p.R1370C 0.47 possibly_damaging(0.689) TCGA-ER-A3PL-06 9 32973493 32973493 G A APTX 3'UTR 0.21 TCGA-ER-A3PL-06 9 37707543 37707543 C T FRMPD1 Missense_Mutation p.P78S 0.26 deleterious(0) probably_damaging(1) TCGA-ER-A3PL-06 9 38397184 38397184 C G ALDH1B1 Missense_Mutation p.T480R 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-ER-A3PL-06 9 79325157 79325157 G A PRUNE2 Missense_Mutation p.S678F 0.70 deleterious(0) probably_damaging(0.935) TCGA-ER-A3PL-06 9 90535776 90535776 G A SPATA31C1 RNA 0.47 TCGA-ER-A3PL-06 9 98221922 98221922 G A PTCH1 Silent p.V949V 0.19 TCGA-ER-A3PL-06 9 99154819 99154835 CTTCAAAACACAAGGTT - ZNF367 Splice_Site p.X231_splice 0.60 TCGA-ER-A3PL-06 X 101098124 101098124 C T NXF5 5'UTR 0.29 TCGA-ER-A3PL-06 X 101572197 101572197 C T NXF2 Intron 0.14 TCGA-ER-A3PL-06 X 111698653 111698653 C T ZCCHC16 Missense_Mutation p.P233S 0.59 tolerated(0.09) benign(0.147) TCGA-ER-A3PL-06 X 134856789 134856789 G A CT45A1 Missense_Mutation p.M188I 0.08 tolerated(1) possibly_damaging(0.888) TCGA-ER-A3PL-06 X 1407772 1407772 G A CSF2RA Missense_Mutation p.R155Q 0.27 tolerated(0.33) benign(0.036) TCGA-ER-A3PL-06 X 141291130 141291130 G A MAGEC2 Missense_Mutation p.T215I 0.84 deleterious(0) possibly_damaging(0.453) TCGA-ER-A3PL-06 X 151284162 151284162 C T RP11-1007I13.4 RNA 0.21 TCGA-ER-A3PL-06 X 153944401 153944401 G A GAB3 Silent p.S92S 0.85 TCGA-ER-A3PL-06 X 229464 229464 G A GTPBP6 Silent p.P66P 0.34 TCGA-ER-A3PL-06 X 39932212 39932212 G A BCOR Missense_Mutation p.T796I 0.26 tolerated(0.12) benign(0.119) TCGA-ER-A3PL-06 X 49161352 49161352 G A GAGE10 Missense_Mutation p.G5E 0.24 tolerated(0.4) probably_damaging(0.979) TCGA-ER-A3PL-06 X 50341481 50341481 G A SHROOM4 Nonsense_Mutation p.R1333* 0.85 TCGA-ER-A3PL-06 X 57021207 57021216 CCATCCGTGC - SPIN3 Frame_Shift_Del p.H56Kfs*7 0.23 TCGA-ER-A3PL-06 X 57337073 57337073 C A FAAH2 Missense_Mutation p.A108E 0.28 tolerated(1) benign(0.02) TCGA-ER-A3PL-06 X 65486411 65486411 C T HEPH Missense_Mutation p.A1179V 0.86 tolerated_low_confidence(1) benign(0.001) TCGA-ER-A3PL-06 X 70357680 70357680 C T MED12 Silent p.H1977H 0.91 TCGA-ER-A3PL-06 X 77528599 77528599 G A CYSLTR1 Silent p.T215T 0.96 TCGA-ER-A42H-01 10 105147056 105147056 C A TAF5 Silent p.R652R 0.95 TCGA-ER-A42H-01 10 133948572 133948572 C A JAKMIP3 Silent p.R293R 0.93 TCGA-ER-A42H-01 11 103908451 103908451 C T DDI1 Missense_Mutation p.R301C 0.40 deleterious(0) probably_damaging(0.999) TCGA-ER-A42H-01 11 209600 209600 C T RIC8A Missense_Mutation p.A109V 0.24 tolerated(0.07) benign(0.062) TCGA-ER-A42H-01 13 28011285 28011288 CTTT - MTIF3 Frame_Shift_Del p.K195Efs*4 0.21 TCGA-ER-A42H-01 13 30097603 30097603 C T SLC7A1 Silent p.Q283Q 0.44 TCGA-ER-A42H-01 14 105678483 105678483 A G BRF1 Silent p.S597S 0.34 TCGA-ER-A42H-01 14 80164222 80164222 C A NRXN3 Missense_Mutation p.T916N 0.39 deleterious(0.03) benign(0.001) TCGA-ER-A42H-01 15 41060197 41060197 C T DNAJC17 Missense_Mutation p.E286K 0.49 deleterious(0.02) benign(0.165) TCGA-ER-A42H-01 15 45003745 45003745 A T B2M Translation_Start_Site p.M1? 0.53 deleterious(0) possibly_damaging(0.456) TCGA-ER-A42H-01 15 45003786 45003789 TCTT - B2M Frame_Shift_Del p.S16Afs*27 0.43 TCGA-ER-A42H-01 15 54803979 54803979 A C UNC13C Missense_Mutation p.Q1803P 0.14 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-ER-A42H-01 15 66729163 66729163 C T MAP2K1 Missense_Mutation p.P124L 0.40 deleterious(0) probably_damaging(0.995) TCGA-ER-A42H-01 15 90293208 90293208 G A MESP1 3'UTR 0.42 TCGA-ER-A42H-01 16 30663152 30663152 T C PRR14 Missense_Mutation p.L20P 0.24 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-ER-A42H-01 16 4564112 4564112 G A CDIP1 Missense_Mutation p.P7L 0.17 deleterious(0) possibly_damaging(0.908) TCGA-ER-A42H-01 16 53243524 53243524 G A CHD9 Missense_Mutation p.R528H 0.45 probably_damaging(0.999) TCGA-ER-A42H-01 16 58568105 58568105 C T CNOT1 Silent p.V1947V 0.60 TCGA-ER-A42H-01 16 67000765 67000765 C A CES3 Silent p.P353P 0.42 TCGA-ER-A42H-01 16 69354045 69354045 C A VPS4A Missense_Mutation p.L208M 0.30 deleterious(0.02) possibly_damaging(0.479) TCGA-ER-A42H-01 17 10542464 10542464 G T MYH3 Missense_Mutation p.L1049M 0.25 tolerated(0.05) benign(0.221) TCGA-ER-A42H-01 17 19284792 19284792 G T MAPK7 Missense_Mutation p.A424S 0.18 tolerated_low_confidence(0.97) unknown(0) TCGA-ER-A42H-01 17 3144312 3144312 C A OR1D4 RNA 0.25 TCGA-ER-A42H-01 17 36047267 36047267 G A HNF1B 3'UTR 0.61 TCGA-ER-A42H-01 18 34802054 34802054 C T KIAA1328 Missense_Mutation p.S533F 0.52 tolerated(0.12) benign(0.065) TCGA-ER-A42H-01 18 47095863 47095863 G C LIPG Silent p.A172A 0.18 TCGA-ER-A42H-01 18 56204417 56204417 G A ALPK2 Missense_Mutation p.A1001V 0.09 tolerated(1) benign(0) TCGA-ER-A42H-01 18 56819782 56819782 C T SEC11C Missense_Mutation p.P71L 0.31 deleterious(0.01) probably_damaging(1) TCGA-ER-A42H-01 19 13910714 13910714 G A ZSWIM4 Missense_Mutation p.V112M 0.23 deleterious(0) probably_damaging(0.938) TCGA-ER-A42H-01 19 17122306 17122306 C T CPAMD8 Missense_Mutation p.V199I 0.56 tolerated(0.28) benign(0.078) TCGA-ER-A42H-01 19 17597456 17597456 G - SLC27A1 Frame_Shift_Del p.V85* 0.57 TCGA-ER-A42H-01 19 1912852 1912852 C T ADAT3 Missense_Mutation p.P269L 0.41 tolerated(0.73) benign(0.01) TCGA-ER-A42H-01 19 3281229 3281229 C T CELF5 Silent p.A212A 0.15 TCGA-ER-A42H-01 19 53056854 53056854 A G ZNF808 Missense_Mutation p.K229E 0.60 deleterious(0.02) benign(0.028) TCGA-ER-A42H-01 19 53995913 53995913 C T ZNF813 3'UTR 0.09 TCGA-ER-A42H-01 19 54385775 54385775 C T PRKCG Silent p.G9G 0.31 TCGA-ER-A42H-01 19 9090379 9090379 G T MUC16 Missense_Mutation p.P479Q 0.18 unknown(0) TCGA-ER-A42H-01 1 100568566 100568566 G T SASS6 Missense_Mutation p.T540N 0.40 tolerated(0.2) benign(0.001) TCGA-ER-A42H-01 1 167042719 167042719 G A GPA33 Missense_Mutation p.S34L 0.28 deleterious(0.02) benign(0.002) TCGA-ER-A42H-01 1 20412607 20412607 C G PLA2G5 Missense_Mutation p.D24E 0.45 tolerated(0.5) benign(0.005) TCGA-ER-A42H-01 1 235301434 235301434 C T RBM34 Missense_Mutation p.E253K 0.10 deleterious(0.04) benign(0.013) TCGA-ER-A42H-01 1 235338527 235338527 G A ARID4B Silent p.P1212P 0.36 TCGA-ER-A42H-01 1 57173406 57173406 T A PRKAA2 3'UTR 0.42 TCGA-ER-A42H-01 1 67220356 67220356 C T TCTEX1D1 Silent p.D5D 0.41 TCGA-ER-A42H-01 20 46313216 46313216 G A SULF2 Missense_Mutation p.R283C 0.50 deleterious(0) probably_damaging(0.999) TCGA-ER-A42H-01 20 57288496 57288496 C T NPEPL1 Missense_Mutation p.T341M 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A42H-01 22 17117967 17117967 T A TPTEP1 RNA 0.13 TCGA-ER-A42H-01 22 39777745 39777745 C T SYNGR1 Silent p.A176A 0.46 TCGA-ER-A42H-01 2 103068710 103068711 - TG IL18RAP 3'UTR 0.36 TCGA-ER-A42H-01 2 219290373 219290379 CCACTAC - VIL1 Frame_Shift_Del p.H63Gfs*25 0.45 TCGA-ER-A42H-01 2 44549983 44549983 G C PREPL Nonsense_Mutation p.S636* 0.44 TCGA-ER-A42H-01 2 84658735 84658736 TC - SUCLG1 Frame_Shift_Del p.E241Nfs*16 0.16 TCGA-ER-A42H-01 3 10452485 10452485 C T ATP2B2 Missense_Mutation p.A72T 0.55 tolerated(0.25) benign(0.36) TCGA-ER-A42H-01 3 12978085 12978085 C T IQSEC1 Missense_Mutation p.R158H 0.30 deleterious(0) probably_damaging(0.999) TCGA-ER-A42H-01 3 138724873 138724873 G C PRR23A Missense_Mutation p.L80V 0.62 tolerated(0.13) probably_damaging(0.998) TCGA-ER-A42H-01 3 167039974 167039974 G T ZBBX Missense_Mutation p.P305Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-ER-A42H-01 3 179472600 179472600 C G USP13 Missense_Mutation p.P627A 0.41 deleterious(0) probably_damaging(1) TCGA-ER-A42H-01 3 46307516 46307516 C T CCR3 Silent p.I310I 0.28 TCGA-ER-A42H-01 4 104062046 104062046 A T CENPE Missense_Mutation p.N1893K 0.95 benign(0.028) TCGA-ER-A42H-01 4 145032510 145032510 T A GYPA 3'UTR 0.98 TCGA-ER-A42H-01 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.97 deleterious(0) probably_damaging(1) TCGA-ER-A42H-01 5 133509694 133509694 T A SKP1 Missense_Mutation p.Q7L 0.30 tolerated(0.34) benign(0.018) TCGA-ER-A42H-01 5 147665658 147665658 C T SPINK13 3'UTR 0.09 TCGA-ER-A42H-01 5 162944563 162944563 T G MAT2B Intron 0.45 TCGA-ER-A42H-01 5 43291134 43291134 T A HMGCS1 3'UTR 0.57 TCGA-ER-A42H-01 5 56558492 56558492 G A GPBP1 Silent p.P452P 0.46 TCGA-ER-A42H-01 5 68715411 68715411 G T MARVELD2 Nonsense_Mutation p.E67* 0.45 TCGA-ER-A42H-01 6 111214843 111214844 - A AMD1 3'UTR 0.43 TCGA-ER-A42H-01 6 159181747 159181747 C T SYTL3 Missense_Mutation p.R462W 0.47 tolerated(0.05) benign(0) TCGA-ER-A42H-01 6 24291186 24291186 G A DCDC2 Silent p.D226D 0.32 TCGA-ER-A42H-01 6 39835373 39835373 C T DAAM2 Silent p.R172R 0.10 TCGA-ER-A42H-01 6 56882033 56882033 G A BEND6 Missense_Mutation p.R183H 0.11 tolerated(0.1) benign(0) TCGA-ER-A42H-01 6 83926315 83926315 C T ME1 Missense_Mutation p.V484I 0.51 deleterious(0.04) benign(0.008) TCGA-ER-A42H-01 7 131859615 131859615 C T PLXNA4 Silent p.P1313P 0.11 TCGA-ER-A42H-01 7 148921667 148921667 C T ZNF282 Silent p.H648H 0.23 TCGA-ER-A42H-01 7 149545315 149545315 C A ZNF862 Missense_Mutation p.P245T 0.71 deleterious_low_confidence(0) benign(0.035) TCGA-ER-A42H-01 7 86803974 86803974 C T DMTF1 Missense_Mutation p.R170C 0.26 deleterious(0.01) possibly_damaging(0.772) TCGA-ER-A42H-01 8 120118572 120118572 C G COLEC10 3'UTR 0.14 TCGA-ER-A42H-01 8 121383475 121383475 C G COL14A1 3'UTR 0.26 TCGA-ER-A42H-01 8 42320573 42320573 A G SLC20A2 Missense_Mutation p.F156L 0.20 tolerated(0.59) benign(0.002) TCGA-ER-A42H-01 9 132637641 132637641 G A USP20 Missense_Mutation p.A701T 0.58 tolerated(0.48) benign(0.001) TCGA-ER-A42H-01 9 32631137 32631137 G A TAF1L Missense_Mutation p.P1481S 0.57 tolerated(0.29) benign(0.151) TCGA-ER-A42H-01 9 33944587 33944587 G A UBAP2 Nonsense_Mutation p.R441* 0.96 TCGA-ER-A42H-01 9 80537210 80537210 T C GNAQ Missense_Mutation p.H63R 0.22 deleterious(0) probably_damaging(0.997) TCGA-ER-A42H-01 X 102004671 102004671 G T BHLHB9 Missense_Mutation p.A250S 0.90 tolerated(0.84) benign(0.026) TCGA-ER-A42K-06 10 105932271 105932271 T A WDR96 Missense_Mutation p.N828I 0.68 deleterious(0) probably_damaging(0.999) TCGA-ER-A42K-06 10 26359273 26359273 T G MYO3A Silent p.G434G 0.69 TCGA-ER-A42K-06 10 26849096 26849096 C T APBB1IP Silent p.T406T 0.67 TCGA-ER-A42K-06 10 33545302 33545302 C T NRP1 Silent p.A252A 0.69 TCGA-ER-A42K-06 10 73053279 73053279 C T UNC5B Silent p.A630A 0.63 TCGA-ER-A42K-06 10 81680759 81680759 G A MBL1P RNA 0.36 TCGA-ER-A42K-06 10 89653829 89653829 G A PTEN Missense_Mutation p.E43K 0.70 deleterious(0.04) benign(0.259) TCGA-ER-A42K-06 10 91497757 91497757 C T KIF20B Silent p.F1013F 0.66 TCGA-ER-A42K-06 10 95718529 95718529 C T PIPSL RNA 0.76 TCGA-ER-A42K-06 10 98741862 98741862 C T C10orf12 Missense_Mutation p.P239S 0.74 tolerated(1) benign(0.001) TCGA-ER-A42K-06 11 119004810 119004810 G A HINFP Missense_Mutation p.D386N 0.23 deleterious(0) probably_damaging(0.978) TCGA-ER-A42K-06 11 4471362 4471362 C T OR52K2 Missense_Mutation p.R265C 0.74 deleterious(0.01) benign(0.045) TCGA-ER-A42K-06 11 4929262 4929262 G A OR51A7 Silent p.L221L 0.79 TCGA-ER-A42K-06 11 4967647 4967651 TCCCA CCCG OR51A4 Frame_Shift_Del p.L227Pfs*23 0.40 TCGA-ER-A42K-06 11 4976259 4976259 T - OR51A2 Frame_Shift_Del p.I229Lfs*21 0.10 TCGA-ER-A42K-06 11 51411976 51411976 G A OR4A5 Silent p.F140F 0.32 TCGA-ER-A42K-06 11 56128352 56128352 C T OR8J1 Silent p.S210S 0.41 TCGA-ER-A42K-06 11 60229804 60229804 C T MS4A1 5'UTR 0.23 TCGA-ER-A42K-06 11 65714442 65714442 C T TSGA10IP RNA 0.28 TCGA-ER-A42K-06 11 69063347 69063347 C T MYEOV Silent p.L144L 0.31 TCGA-ER-A42K-06 11 71850855 71850855 C T FOLR3 Missense_Mutation p.R282C 0.62 tolerated(0.12) benign(0.019) TCGA-ER-A42K-06 12 106480601 106480601 C T NUAK1 Missense_Mutation p.D142N 0.36 deleterious(0.01) probably_damaging(1) TCGA-ER-A42K-06 12 117652942 117652942 A G NOS1 3'Flank 0.27 TCGA-ER-A42K-06 12 119592159 119592159 G A SRRM4 Silent p.P501P 0.37 TCGA-ER-A42K-06 12 121711906 121711906 G A CAMKK2 Missense_Mutation p.R142W 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 12 121711907 121711907 G A CAMKK2 Silent p.P141P 0.45 TCGA-ER-A42K-06 12 124118133 124118133 G A EIF2B1 5'UTR 0.29 TCGA-ER-A42K-06 12 126137126 126137126 G A TMEM132B Missense_Mutation p.R680K 0.34 tolerated(0.32) probably_damaging(0.943) TCGA-ER-A42K-06 12 18889205 18889205 C T PLCZ1 Missense_Mutation p.E29K 0.50 tolerated(1) benign(0.086) TCGA-ER-A42K-06 12 21015405 21015405 C T SLCO1B3 Missense_Mutation p.R181C 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 12 27849976 27849976 G A REP15 Missense_Mutation p.G161S 0.50 deleterious(0.01) probably_damaging(1) TCGA-ER-A42K-06 12 47629357 47629357 G A PCED1B Missense_Mutation p.E171K 0.41 tolerated(1) benign(0.001) TCGA-ER-A42K-06 12 48578083 48578083 G A C12orf68 Missense_Mutation p.A60T 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ER-A42K-06 12 52910596 52910596 C T KRT5 Missense_Mutation p.E422K 0.50 deleterious(0) probably_damaging(0.955) TCGA-ER-A42K-06 12 53043718 53043718 C T KRT2 Missense_Mutation p.D281N 0.32 deleterious(0) probably_damaging(0.99) TCGA-ER-A42K-06 12 56385913 56385913 C T RAB5B Silent p.L189L 0.33 TCGA-ER-A42K-06 12 56515735 56515735 C T ZC3H10 3'UTR 0.50 TCGA-ER-A42K-06 12 66935637 66935637 T A GRIP1 Missense_Mutation p.K77M 0.44 deleterious(0) probably_damaging(0.991) TCGA-ER-A42K-06 12 86198973 86198973 C T RASSF9 Missense_Mutation p.R272Q 0.47 tolerated(1) benign(0.001) TCGA-ER-A42K-06 12 8988848 8988848 C T A2ML1 Intron 0.31 TCGA-ER-A42K-06 12 91347640 91347640 C T CCER1 Missense_Mutation p.V294M 0.39 tolerated(0.13) unknown(0) TCGA-ER-A42K-06 12 94975508 94975508 C A TMCC3 Missense_Mutation p.R295S 0.33 deleterious(0.01) possibly_damaging(0.622) TCGA-ER-A42K-06 13 102375280 102375280 C T FGF14 Silent p.G220G 0.35 TCGA-ER-A42K-06 13 107823080 107823080 C T FAM155A Missense_Mutation p.R381K 0.43 tolerated(1) benign(0.036) TCGA-ER-A42K-06 13 113744028 113744028 C T MCF2L Missense_Mutation p.P980L 0.28 deleterious(0.04) benign(0.067) TCGA-ER-A42K-06 13 113975899 113975899 C G LAMP1 Missense_Mutation p.S324C 0.36 deleterious(0) probably_damaging(0.998) TCGA-ER-A42K-06 13 73572997 73572997 A T PIBF1 Missense_Mutation p.H696L 0.36 tolerated(0.16) benign(0.022) TCGA-ER-A42K-06 13 84453559 84453559 G A SLITRK1 Missense_Mutation p.S695L 0.42 deleterious_low_confidence(0) benign(0.191) TCGA-ER-A42K-06 13 84454588 84454588 C T SLITRK1 Missense_Mutation p.G352E 0.43 tolerated(0.16) benign(0) TCGA-ER-A42K-06 13 92101085 92101085 G A GPC5 Silent p.Q78Q 0.41 TCGA-ER-A42K-06 14 36841161 36841161 C T DPPA3P2 RNA 0.52 TCGA-ER-A42K-06 14 64604591 64604591 T C SYNE2 Silent p.C4911C 0.67 TCGA-ER-A42K-06 14 67669846 67669846 C T FAM71D Silent p.N65N 0.81 TCGA-ER-A42K-06 14 95030225 95030225 G A SERPINA4 Missense_Mutation p.E136K 0.67 deleterious(0.01) probably_damaging(0.936) TCGA-ER-A42K-06 15 102215871 102215871 G A TARSL2 Nonsense_Mutation p.Q574* 0.51 TCGA-ER-A42K-06 15 42105899 42105899 C G MAPKBP1 Missense_Mutation p.N306K 0.27 tolerated(0.05) benign(0.27) TCGA-ER-A42K-06 15 42282347 42282347 C T PLA2G4E Silent p.K519K 0.42 TCGA-ER-A42K-06 15 43893150 43893150 G A STRC Silent p.F1588F 0.41 TCGA-ER-A42K-06 15 49030703 49030703 T C CEP152 Missense_Mutation p.I1626V 0.46 tolerated(0.89) benign(0.004) TCGA-ER-A42K-06 15 51503047 51503047 C T CYP19A1 Missense_Mutation p.M490I 0.52 deleterious(0.03) benign(0.006) TCGA-ER-A42K-06 15 65041212 65041212 G A RBPMS2 Silent p.I135I 0.25 TCGA-ER-A42K-06 15 70366859 70366859 G A TLE3 Intron 0.41 TCGA-ER-A42K-06 15 91027479 91027479 C T IQGAP1 Silent p.V1272V 0.41 TCGA-ER-A42K-06 15 92981814 92981814 G A ST8SIA2 Silent p.E174E 0.34 TCGA-ER-A42K-06 16 20803375 20803375 G A ACSM3 Missense_Mutation p.G460R 0.36 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 16 24919327 24919327 C T SLC5A11 Missense_Mutation p.P437S 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A42K-06 16 30365005 30365005 G A CD2BP2 Silent p.L164L 0.26 TCGA-ER-A42K-06 16 31087618 31087618 A G ZNF646 5'UTR 0.36 TCGA-ER-A42K-06 16 67168328 67168328 G A C16orf70 Missense_Mutation p.G207R 0.36 tolerated(0.42) benign(0.005) TCGA-ER-A42K-06 16 67267828 67267828 G A FHOD1 Missense_Mutation p.P593L 0.81 tolerated(0.08) benign(0.002) TCGA-ER-A42K-06 16 69972963 69972963 C T WWP2 Missense_Mutation p.R793W 0.92 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 16 70977757 70977757 G A HYDIN Silent p.L2209L 0.38 TCGA-ER-A42K-06 16 8729085 8729085 G A METTL22 Missense_Mutation p.G206R 0.57 deleterious(0.02) probably_damaging(0.968) TCGA-ER-A42K-06 16 8829585 8829585 C T ABAT 5'UTR 0.58 TCGA-ER-A42K-06 16 90161556 90161556 G C TUBB8P7 RNA 0.17 TCGA-ER-A42K-06 17 10427155 10427155 G A MYH2 Missense_Mutation p.S1741F 0.46 deleterious(0.02) benign(0.166) TCGA-ER-A42K-06 17 10440701 10440701 C T MYH2 Silent p.L582L 0.40 TCGA-ER-A42K-06 17 1401312 1401312 G A INPP5K Missense_Mutation p.S294F 0.38 tolerated(0.1) benign(0.01) TCGA-ER-A42K-06 17 19644444 19644444 G A ALDH3A1 Nonsense_Mutation p.Q257* 0.38 TCGA-ER-A42K-06 17 33433426 33433426 G A RAD51L3-RFFL Silent p.L26L 0.24 TCGA-ER-A42K-06 17 33690465 33690465 A T SLFN11 Missense_Mutation p.V121D 0.35 deleterious(0.03) benign(0.02) TCGA-ER-A42K-06 17 34340784 34340784 A C CCL23 Missense_Mutation p.I101S 0.44 deleterious(0) probably_damaging(0.999) TCGA-ER-A42K-06 17 37864763 37864763 G A ERBB2 Missense_Mutation p.E139K 0.39 deleterious(0.01) possibly_damaging(0.895) TCGA-ER-A42K-06 17 38122030 38122030 C T GSDMA Silent p.F30F 0.38 TCGA-ER-A42K-06 17 38131251 38131251 C T GSDMA Silent p.F335F 0.47 TCGA-ER-A42K-06 17 39122699 39122699 G A KRT39 Missense_Mutation p.P137L 0.38 tolerated(0.07) probably_damaging(0.938) TCGA-ER-A42K-06 17 42475518 42475518 G A GPATCH8 Silent p.P1309P 0.39 TCGA-ER-A42K-06 17 4442654 4442654 A T MYBBP1A Intron 0.43 TCGA-ER-A42K-06 17 48614415 48614415 G A EPN3 Silent p.L166L 0.33 TCGA-ER-A42K-06 17 48626277 48626277 C T SPATA20 Silent p.D156D 0.34 TCGA-ER-A42K-06 17 56435546 56435546 G A RNF43 Missense_Mutation p.R531C 0.43 deleterious(0) probably_damaging(0.932) TCGA-ER-A42K-06 17 78195416 78195416 C T SLC26A11 Silent p.A19A 0.36 TCGA-ER-A42K-06 17 7851537 7851537 C T CNTROB Missense_Mutation p.H758Y 0.31 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-ER-A42K-06 18 28609539 28609539 C T DSC3 Nonsense_Mutation p.W137* 0.38 TCGA-ER-A42K-06 18 28650811 28650811 G A DSC2 Silent p.L711L 0.28 TCGA-ER-A42K-06 18 28935403 28935403 C T DSG1 3'UTR 0.24 TCGA-ER-A42K-06 18 33647303 33647303 C A RPRD1A Missense_Mutation p.S22I 0.42 deleterious(0) probably_damaging(0.946) TCGA-ER-A42K-06 18 6080950 6080950 T A L3MBTL4 Missense_Mutation p.R458S 0.82 tolerated(0.1) benign(0.335) TCGA-ER-A42K-06 18 63511054 63511054 G A CDH7 Missense_Mutation p.D330N 0.36 tolerated(0.16) benign(0.325) TCGA-ER-A42K-06 19 15587190 15587190 C T PGLYRP2 Silent p.V97V 0.19 TCGA-ER-A42K-06 19 17690353 17690353 C T COLGALT1 Silent p.F443F 0.34 TCGA-ER-A42K-06 19 20045607 20045607 C T ZNF93 Missense_Mutation p.H615Y 0.39 tolerated(0.07) benign(0.034) TCGA-ER-A42K-06 19 41749596 41749596 G A AXL Silent p.R507R 0.46 TCGA-ER-A42K-06 19 43585288 43585288 G A PSG2 Missense_Mutation p.P59S 0.40 tolerated(0.12) possibly_damaging(0.708) TCGA-ER-A42K-06 19 4694625 4694625 C A DPP9 Intron 0.38 TCGA-ER-A42K-06 19 49094967 49094967 C T SULT2B1 Silent p.F175F 0.37 TCGA-ER-A42K-06 19 51465133 51465133 T C KLK6 Missense_Mutation p.D150G 0.36 tolerated(0.15) benign(0.007) TCGA-ER-A42K-06 19 52196094 52196094 T C MIRLET7E RNA 0.45 TCGA-ER-A42K-06 19 55966692 55966692 C T ISOC2 Silent p.T134T 0.38 TCGA-ER-A42K-06 19 58578217 58578217 G A ZNF135 Nonsense_Mutation p.W146* 0.38 TCGA-ER-A42K-06 19 58579604 58579604 G A ZNF135 Silent p.G608G 0.33 TCGA-ER-A42K-06 19 8595349 8595349 C T MYO1F Missense_Mutation p.E718K 0.34 tolerated(0.09) benign(0.088) TCGA-ER-A42K-06 1 103453274 103453274 G A COL11A1 Missense_Mutation p.P806L 0.40 unknown(0) TCGA-ER-A42K-06 1 104161558 104161558 T A AMY2A Missense_Mutation p.I114N 0.30 deleterious(0) probably_damaging(0.991) TCGA-ER-A42K-06 1 110169802 110169802 C T AMPD2 Missense_Mutation p.P296S 0.39 tolerated(0.1) benign(0.017) TCGA-ER-A42K-06 1 112298445 112298445 T C DDX20 5'UTR 0.61 TCGA-ER-A42K-06 1 118479464 118479464 A T WDR3 Missense_Mutation p.I152F 0.39 deleterious(0) possibly_damaging(0.788) TCGA-ER-A42K-06 1 12943124 12943124 T A PRAMEF4 Missense_Mutation p.E31V 0.42 deleterious(0) possibly_damaging(0.697) TCGA-ER-A42K-06 1 151740681 151740681 C T OAZ3 Nonsense_Mutation p.Q106* 0.35 TCGA-ER-A42K-06 1 152188039 152188039 T A HRNR Silent p.A2022A 0.18 TCGA-ER-A42K-06 1 152283661 152283661 C T FLG Missense_Mutation p.G1234E 0.26 probably_damaging(0.982) TCGA-ER-A42K-06 1 152284145 152284145 C T FLG Missense_Mutation p.D1073N 0.25 probably_damaging(0.968) TCGA-ER-A42K-06 1 158325757 158325757 C T CD1E Nonsense_Mutation p.R256* 0.36 TCGA-ER-A42K-06 1 158587365 158587365 C T SPTA1 Missense_Mutation p.E2188K 0.25 deleterious(0.05) possibly_damaging(0.805) TCGA-ER-A42K-06 1 159858161 159858161 T A CCDC19 Missense_Mutation p.K133M 0.37 tolerated(0.11) benign(0.036) TCGA-ER-A42K-06 1 179077937 179077937 G A ABL2 Missense_Mutation p.P822L 0.12 deleterious_low_confidence(0) benign(0.367) TCGA-ER-A42K-06 1 182909649 182909649 T G SHCBP1L Silent p.S195S 0.29 TCGA-ER-A42K-06 1 196227479 196227479 C T KCNT2 Missense_Mutation p.R1019Q 0.55 deleterious(0.02) possibly_damaging(0.844) TCGA-ER-A42K-06 1 204970382 204970382 C G NFASC Missense_Mutation p.P1035R 0.25 tolerated(0.21) unknown(0) TCGA-ER-A42K-06 1 206902119 206902119 C T MAPKAPK2 Missense_Mutation p.P115L 0.54 deleterious(0.03) benign(0.211) TCGA-ER-A42K-06 1 247737747 247737747 G A GCSAML 3'UTR 0.39 TCGA-ER-A42K-06 1 248039236 248039236 G A TRIM58 Silent p.P302P 0.34 TCGA-ER-A42K-06 1 248039696 248039696 C T TRIM58 Missense_Mutation p.L456F 0.64 deleterious(0.02) probably_damaging(0.977) TCGA-ER-A42K-06 1 27941432 27941432 A G FGR Silent p.L342L 0.27 TCGA-ER-A42K-06 1 29557308 29557308 G A MECR Silent p.S37S 0.60 TCGA-ER-A42K-06 1 35579871 35579871 C T ZMYM1 Missense_Mutation p.R814C 0.31 tolerated(0.1) benign(0.386) TCGA-ER-A42K-06 1 48697297 48697297 G A SLC5A9 Missense_Mutation p.G256S 0.33 tolerated(0.64) benign(0.393) TCGA-ER-A42K-06 1 53556371 53556371 C T SLC1A7 Missense_Mutation p.G380D 0.09 deleterious(0) probably_damaging(0.998) TCGA-ER-A42K-06 1 6534165 6534165 G A PLEKHG5 Silent p.L246L 0.50 TCGA-ER-A42K-06 1 67148034 67148034 G A SGIP1 Missense_Mutation p.G433S 0.35 tolerated(0.32) probably_damaging(0.986) TCGA-ER-A42K-06 20 2559848 2559848 G A TMC2 Nonsense_Mutation p.W234* 0.34 TCGA-ER-A42K-06 20 31387101 31387101 C T DNMT3B Nonsense_Mutation p.R576* 0.48 TCGA-ER-A42K-06 20 33346697 33346697 G A NCOA6 Missense_Mutation p.P185L 0.50 benign(0.16) TCGA-ER-A42K-06 20 36641212 36641212 A T TTI1 Nonsense_Mutation p.L336* 0.33 TCGA-ER-A42K-06 20 60883138 60883138 C T ADRM1 Silent p.V306V 0.50 TCGA-ER-A42K-06 20 60883139 60883139 C T ADRM1 Nonsense_Mutation p.Q307* 0.50 TCGA-ER-A42K-06 21 39580519 39580519 C T DSCR10 RNA 0.45 TCGA-ER-A42K-06 21 45999719 45999719 G A KRTAP10-5 Missense_Mutation p.S246F 0.34 deleterious(0) probably_damaging(0.998) TCGA-ER-A42K-06 21 46032355 46032355 C T KRTAP10-8 Missense_Mutation p.P113L 0.42 deleterious(0.04) unknown(0) TCGA-ER-A42K-06 22 24175874 24175874 C T SMARCB1 Nonsense_Mutation p.Q368* 0.30 TCGA-ER-A42K-06 22 29629639 29629639 G A EMID1 Missense_Mutation p.G317E 0.33 deleterious(0) probably_damaging(0.945) TCGA-ER-A42K-06 22 31592963 31592963 C T RNF185 Missense_Mutation p.P117L 0.37 deleterious(0) possibly_damaging(0.9) TCGA-ER-A42K-06 22 36538010 36538010 C T APOL3 Silent p.R149R 0.38 TCGA-ER-A42K-06 22 43575914 43575914 G A TTLL12 Silent p.P213P 0.38 TCGA-ER-A42K-06 22 46652877 46652877 C T PKDREJ Missense_Mutation p.E2115K 0.38 deleterious(0) probably_damaging(0.991) TCGA-ER-A42K-06 2 108881360 108881360 A T SULT1C3 Missense_Mutation p.Y234F 0.35 deleterious(0.02) possibly_damaging(0.546) TCGA-ER-A42K-06 2 141773269 141773269 C T LRP1B Missense_Mutation p.R729K 0.35 benign(0.067) TCGA-ER-A42K-06 2 166187941 166187941 C T SCN2A Missense_Mutation p.L751F 0.41 tolerated(0.49) benign(0.007) TCGA-ER-A42K-06 2 167163561 167163561 C T SCN9A Silent p.G94G 0.30 TCGA-ER-A42K-06 2 182400246 182400246 G A ITGA4 Missense_Mutation p.D1031N 0.39 tolerated_low_confidence(0.18) benign(0.004) TCGA-ER-A42K-06 2 188250306 188250306 G A CALCRL Missense_Mutation p.T6I 0.27 tolerated(0.64) benign(0) TCGA-ER-A42K-06 2 189901529 189901529 C T COL5A2 Missense_Mutation p.G1309D 0.64 unknown(0) TCGA-ER-A42K-06 2 196620890 196620890 C T DNAH7 Silent p.V3851V 0.41 TCGA-ER-A42K-06 2 206659776 206659776 G A NRP2 Silent p.E930E 0.48 TCGA-ER-A42K-06 2 210560367 210560367 C T MAP2 Missense_Mutation p.S1158L 0.43 tolerated_low_confidence(0.07) benign(0.385) TCGA-ER-A42K-06 2 220155602 220155602 C T PTPRN Missense_Mutation p.G914R 0.45 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 2 227892726 227892726 C T COL4A4 Splice_Site p.X1325_splice 0.33 TCGA-ER-A42K-06 2 231738153 231738153 C T ITM2C Nonsense_Mutation p.R48* 0.35 TCGA-ER-A42K-06 2 232458755 232458755 G A C2orf57 Missense_Mutation p.E365K 0.46 deleterious(0) possibly_damaging(0.801) TCGA-ER-A42K-06 2 239757124 239757124 C T TWIST2 Missense_Mutation p.R90C 0.25 deleterious(0) probably_damaging(0.998) TCGA-ER-A42K-06 2 27876388 27876388 G T SUPT7L Missense_Mutation p.F403L 0.44 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-ER-A42K-06 2 28775809 28775809 G A PLB1 Silent p.A366A 0.14 TCGA-ER-A42K-06 2 49190046 49190046 G A FSHR Silent p.F638F 0.38 TCGA-ER-A42K-06 2 49210091 49210091 G A FSHR Missense_Mutation p.P210S 0.32 tolerated(0.38) benign(0.003) TCGA-ER-A42K-06 2 69034517 69034517 G A ARHGAP25 Silent p.R193R 0.44 TCGA-ER-A42K-06 2 74763985 74763985 G A LOXL3 Missense_Mutation p.L255F 0.35 deleterious(0.01) probably_damaging(0.961) TCGA-ER-A42K-06 2 86439569 86439569 G A MRPL35 3'UTR 0.33 TCGA-ER-A42K-06 2 97427614 97427614 G A CNNM4 Missense_Mutation p.R293Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-ER-A42K-06 3 108112877 108112877 C T MYH15 Splice_Site p.X1773_splice 0.45 TCGA-ER-A42K-06 3 108541715 108541715 G A TRAT1 5'UTR 0.33 TCGA-ER-A42K-06 3 112358356 112358356 G A CCDC80 Missense_Mutation p.P133S 0.35 tolerated(0.05) possibly_damaging(0.857) TCGA-ER-A42K-06 3 120673793 120673793 C T STXBP5L Missense_Mutation p.R66W 0.36 deleterious(0) possibly_damaging(0.816) TCGA-ER-A42K-06 3 152058688 152058688 C T TMEM14E Silent p.Q2Q 0.30 TCGA-ER-A42K-06 3 159976231 159976231 C T IFT80 3'UTR 0.48 TCGA-ER-A42K-06 3 169540522 169540522 G A LRRIQ4 Silent p.K271K 0.33 TCGA-ER-A42K-06 3 170802931 170802931 C T TNIK Missense_Mutation p.E992K 0.46 tolerated(0.83) benign(0.366) TCGA-ER-A42K-06 3 183778213 183778213 C T HTR3C 3'UTR 0.40 TCGA-ER-A42K-06 3 186274415 186274415 G A TBCCD1 Silent p.F214F 0.54 TCGA-ER-A42K-06 3 40231956 40231956 T C MYRIP Splice_Site p.X555_splice 0.46 TCGA-ER-A42K-06 3 46062675 46062675 G A XCR1 Silent p.I255I 0.44 TCGA-ER-A42K-06 3 64008022 64008022 G A PSMD6 Missense_Mutation p.A108V 0.35 deleterious(0) probably_damaging(0.936) TCGA-ER-A42K-06 3 8775623 8775623 G A CAV3 Missense_Mutation p.E21K 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-ER-A42K-06 3 88104750 88104750 A C CGGBP1 Missense_Mutation p.V126G 0.29 deleterious(0) possibly_damaging(0.885) TCGA-ER-A42K-06 3 93595812 93595812 G A PROS1 Missense_Mutation p.P623L 0.42 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 4 106879638 106879638 A G NPNT Silent p.Q420Q 0.31 TCGA-ER-A42K-06 4 153691655 153691655 G A TIGD4 Missense_Mutation p.P168S 0.35 tolerated(0.09) possibly_damaging(0.886) TCGA-ER-A42K-06 4 154216955 154216955 G A TRIM2 Missense_Mutation p.G426E 0.31 deleterious(0) probably_damaging(0.992) TCGA-ER-A42K-06 4 1725500 1725500 C T TACC3 Silent p.L70L 0.35 TCGA-ER-A42K-06 4 176555998 176555998 G A GPM6A 3'UTR 0.42 TCGA-ER-A42K-06 4 2943920 2943920 G C NOP14 Missense_Mutation p.R684G 0.40 deleterious(0) probably_damaging(0.996) TCGA-ER-A42K-06 4 37962067 37962067 G A PTTG2 Silent p.L4L 0.31 TCGA-ER-A42K-06 4 38016291 38016291 C T TBC1D1 Silent p.I193I 0.34 TCGA-ER-A42K-06 4 39278649 39278649 T C WDR19 Silent p.D1242D 0.05 TCGA-ER-A42K-06 4 41648703 41648703 G A LIMCH1 Missense_Mutation p.M486I 0.38 deleterious(0.02) benign(0.206) TCGA-ER-A42K-06 4 42588380 42588380 C A ATP8A1 Missense_Mutation p.R236S 0.33 tolerated(0.25) possibly_damaging(0.6) TCGA-ER-A42K-06 4 47938364 47938364 A G CNGA1 3'UTR 0.38 TCGA-ER-A42K-06 4 6083420 6083420 C T JAKMIP1 Missense_Mutation p.M339I 0.41 deleterious(0.01) benign(0.028) TCGA-ER-A42K-06 4 70146620 70146620 G A UGT2B28 Silent p.K134K 0.83 TCGA-ER-A42K-06 4 75314925 75314925 G A AREG Missense_Mutation p.E158K 0.32 tolerated(0.08) benign(0.27) TCGA-ER-A42K-06 4 94547420 94547420 G A GRID2 Missense_Mutation p.V732I 0.38 tolerated(0.07) possibly_damaging(0.532) TCGA-ER-A42K-06 4 9892267 9892267 G A SLC2A9 Silent p.F394F 0.36 TCGA-ER-A42K-06 5 122343409 122343409 C T SNX24 Missense_Mutation p.H159Y 0.36 deleterious(0) benign(0.123) TCGA-ER-A42K-06 5 128320839 128320839 G A SLC27A6 Silent p.T165T 0.37 TCGA-ER-A42K-06 5 128320840 128320840 G A SLC27A6 Missense_Mutation p.V166I 0.37 tolerated(0.49) benign(0.009) TCGA-ER-A42K-06 5 137763658 137763658 T C KDM3B Silent p.L1546L 0.44 TCGA-ER-A42K-06 5 139908101 139908101 C T ANKHD1 Missense_Mutation p.A1857V 0.38 probably_damaging(0.989) TCGA-ER-A42K-06 5 140174597 140174597 C T PCDHA2 Silent p.L16L 0.40 TCGA-ER-A42K-06 5 140720248 140720248 C T PCDHGA2 Silent p.D570D 0.46 TCGA-ER-A42K-06 5 15936848 15936848 G A FBXL7 Silent p.R343R 0.44 TCGA-ER-A42K-06 5 15936849 15936849 G A FBXL7 Missense_Mutation p.E344K 0.44 deleterious(0) possibly_damaging(0.681) TCGA-ER-A42K-06 5 160721115 160721115 G A GABRB2 Silent p.I504I 0.39 TCGA-ER-A42K-06 5 167946303 167946303 C T RARS 3'UTR 0.33 TCGA-ER-A42K-06 5 171766218 171766218 G A SH3PXD2B Missense_Mutation p.P631S 0.43 tolerated(0.8) benign(0.004) TCGA-ER-A42K-06 5 76649203 76649203 T C PDE8B Missense_Mutation p.L380P 0.43 tolerated(0.44) benign(0.004) TCGA-ER-A42K-06 5 79968679 79968679 T A MSH3 Splice_Site p.X343_splice 0.33 TCGA-ER-A42K-06 5 90077243 90077243 G A GPR98 Intron 0.41 TCGA-ER-A42K-06 6 125233680 125233680 C T RP11-510H23.1 RNA 0.81 TCGA-ER-A42K-06 6 13365624 13365624 G A GFOD1 Missense_Mutation p.S175F 0.35 tolerated(0.11) possibly_damaging(0.588) TCGA-ER-A42K-06 6 160963809 160963809 T G LPA Missense_Mutation p.Q1810H 0.64 deleterious(0.05) benign(0.322) TCGA-ER-A42K-06 6 29324008 29324008 G A OR5V1 5'UTR 0.44 TCGA-ER-A42K-06 6 32065719 32065719 C T TNXB Missense_Mutation p.G86D 0.27 probably_damaging(0.996) TCGA-ER-A42K-06 6 32065720 32065720 C T TNXB Missense_Mutation p.G86S 0.27 probably_damaging(0.994) TCGA-ER-A42K-06 6 34024429 34024429 C T GRM4 Missense_Mutation p.D354N 0.39 tolerated(0.2) benign(0.272) TCGA-ER-A42K-06 6 34498027 34498027 C T PACSIN1 Missense_Mutation p.H266Y 0.27 deleterious(0.03) benign(0.007) TCGA-ER-A42K-06 6 46623671 46623671 C T SLC25A27 Silent p.A66A 0.40 TCGA-ER-A42K-06 6 54804556 54804556 G A FAM83B Missense_Mutation p.G263R 0.38 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 6 73843167 73843167 G A KCNQ5 Missense_Mutation p.R443Q 0.49 deleterious(0) possibly_damaging(0.557) TCGA-ER-A42K-06 6 96652119 96652119 C T FUT9 3'UTR 0.67 TCGA-ER-A42K-06 7 101190505 101190505 C T COL26A1 Missense_Mutation p.P309S 0.73 tolerated(0.13) probably_damaging(1) TCGA-ER-A42K-06 7 101190506 101190506 C T COL26A1 Missense_Mutation p.P309L 0.67 tolerated(0.22) probably_damaging(1) TCGA-ER-A42K-06 7 115582051 115582051 C T TFEC Missense_Mutation p.E187K 0.55 deleterious(0) possibly_damaging(0.811) TCGA-ER-A42K-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.64 deleterious(0) probably_damaging(0.967) TCGA-ER-A42K-06 7 149482222 149482222 G A SSPO RNA 0.60 TCGA-ER-A42K-06 7 20738088 20738088 C T ABCB5 Missense_Mutation p.P690L 0.62 tolerated(0.17) benign(0.007) TCGA-ER-A42K-06 7 2645590 2645590 C T IQCE Silent p.I608I 0.42 TCGA-ER-A42K-06 7 37904009 37904009 G A NME8 Missense_Mutation p.E172K 0.12 deleterious(0.02) possibly_damaging(0.612) TCGA-ER-A42K-06 7 42088290 42088290 G A GLI3 Missense_Mutation p.S160F 0.64 deleterious(0.01) possibly_damaging(0.878) TCGA-ER-A42K-06 7 82544427 82544427 G A PCLO Missense_Mutation p.S4292F 0.19 unknown(0) TCGA-ER-A42K-06 7 87476272 87476272 G A SLC25A40 Missense_Mutation p.P208L 0.54 deleterious(0) probably_damaging(1) TCGA-ER-A42K-06 8 107773620 107773620 G T ABRA Missense_Mutation p.P264H 0.36 deleterious(0) probably_damaging(0.999) TCGA-ER-A42K-06 8 110986181 110986181 C T KCNV1 Missense_Mutation p.S146N 0.28 tolerated(0.15) benign(0.005) TCGA-ER-A42K-06 8 130778039 130778039 C A GSDMC Missense_Mutation p.R135S 0.39 tolerated(0.06) possibly_damaging(0.888) TCGA-ER-A42K-06 8 22013918 22013918 G A LGI3 Silent p.T46T 0.88 TCGA-ER-A42K-06 8 22013919 22013919 G A LGI3 Missense_Mutation p.T46I 0.88 tolerated(0.06) possibly_damaging(0.507) TCGA-ER-A42K-06 8 37730618 37730618 G A RAB11FIP1 Missense_Mutation p.P568S 0.47 tolerated(0.83) benign(0.007) TCGA-ER-A42K-06 8 43054595 43054595 G C HGSNAT Missense_Mutation p.W597C 0.32 deleterious(0) probably_damaging(0.999) TCGA-ER-A42K-06 8 52412278 52412278 G A PXDNL Missense_Mutation p.L145F 0.34 deleterious(0) possibly_damaging(0.893) TCGA-ER-A42K-06 8 55540286 55540286 C T RP1 Missense_Mutation p.P1282S 0.32 tolerated(0.14) benign(0.01) TCGA-ER-A42K-06 8 55542491 55542491 G A RP1 Missense_Mutation p.E2017K 0.38 tolerated(0.18) benign(0.063) TCGA-ER-A42K-06 8 73993254 73993254 C T SBSPON Missense_Mutation p.V137I 0.36 tolerated(0.62) possibly_damaging(0.477) TCGA-ER-A42K-06 9 119976856 119976856 C T ASTN2 Missense_Mutation p.E266K 0.80 deleterious_low_confidence(0) unknown(0) TCGA-ER-A42K-06 9 125620300 125620300 G A RC3H2 Missense_Mutation p.H786Y 0.84 deleterious(0) possibly_damaging(0.885) TCGA-ER-A42K-06 9 126139294 126139294 G A CRB2 Missense_Mutation p.E1271K 0.93 deleterious(0) possibly_damaging(0.678) TCGA-ER-A42K-06 9 18777008 18777008 C T ADAMTSL1 Silent p.A927A 0.84 TCGA-ER-A42K-06 9 27011931 27011931 G C IFT74 Missense_Mutation p.D252H 0.64 deleterious(0) probably_damaging(0.988) TCGA-ER-A42K-06 9 32449071 32449071 C T ACO1 Nonsense_Mutation p.Q850* 0.68 TCGA-ER-A42K-06 9 5466801 5466801 C T CD274 Silent p.I274I 0.70 TCGA-ER-A42K-06 9 97062125 97062125 T C ZNF169 Silent p.F95F 0.81 TCGA-ER-A42K-06 X 12940065 12940065 A T TLR8 Missense_Mutation p.D969V 0.73 deleterious(0) probably_damaging(0.971) TCGA-ER-A42K-06 X 130411013 130411013 G A IGSF1 Silent p.I841I 0.69 TCGA-ER-A42K-06 X 140336602 140336602 G A SPANXC 5'UTR 0.67 TCGA-ER-A42K-06 X 151900152 151900152 G A MAGEA12 Missense_Mutation p.P217S 0.73 tolerated(0.33) benign(0.017) TCGA-ER-A42K-06 X 151900153 151900153 G A MAGEA12 Silent p.A216A 0.72 TCGA-ER-A42K-06 X 69255255 69255255 G A EDA Silent p.V324V 0.68 TCGA-ER-A42K-06 X 70146006 70146006 G T SLC7A3 Missense_Mutation p.P548Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 10 102748263 102748263 C T C10orf2 Missense_Mutation p.S99F 0.10 deleterious(0.03) possibly_damaging(0.615) TCGA-ER-A42L-06 10 105372776 105372776 G A SH3PXD2A Silent p.A336A 0.08 TCGA-ER-A42L-06 10 113928205 113928205 G A GPAM Silent p.T324T 0.07 TCGA-ER-A42L-06 10 120353582 120353582 G A PRLHR 3'UTR 0.08 TCGA-ER-A42L-06 10 122334781 122334781 C T PPAPDC1A Missense_Mutation p.S195F 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 10 124591857 124591857 G A CUZD1 Silent p.I587I 0.06 TCGA-ER-A42L-06 10 127548267 127548267 G A DHX32 Nonsense_Mutation p.Q252* 0.05 TCGA-ER-A42L-06 10 18266935 18266935 C T SLC39A12 Nonsense_Mutation p.Q286* 0.06 TCGA-ER-A42L-06 10 21139336 21139336 C T NEBL Silent p.K368K 0.07 TCGA-ER-A42L-06 10 24813448 24813448 C T KIAA1217 Missense_Mutation p.R885C 0.10 deleterious(0) benign(0.02) TCGA-ER-A42L-06 10 27301860 27301860 G A ANKRD26 Missense_Mutation p.T1635I 0.05 deleterious(0.01) possibly_damaging(0.787) TCGA-ER-A42L-06 10 33469010 33469010 C T NRP1 Silent p.E922E 0.08 TCGA-ER-A42L-06 10 37508651 37508651 A G ANKRD30A Silent p.L1281L 0.19 TCGA-ER-A42L-06 10 38120867 38120867 G A ZNF248 Silent p.S472S 0.08 TCGA-ER-A42L-06 10 38647312 38647312 G A HSD17B7P2 RNA 0.11 TCGA-ER-A42L-06 10 45602133 45602133 C T RSU1P2 RNA 0.17 TCGA-ER-A42L-06 10 50532604 50532604 C T C10orf71 Missense_Mutation p.L672F 0.07 tolerated(0.77) benign(0.027) TCGA-ER-A42L-06 10 54049986 54049986 G A PRKG1 Nonsense_Mutation p.W633* 0.08 TCGA-ER-A42L-06 10 55955448 55955448 C T PCDH15 Missense_Mutation p.E434K 0.08 deleterious(0.04) possibly_damaging(0.809) TCGA-ER-A42L-06 10 61830336 61830336 G A ANK3 Missense_Mutation p.P3435S 0.10 benign(0.068) TCGA-ER-A42L-06 10 61830337 61830337 G A ANK3 Silent p.L3434L 0.11 TCGA-ER-A42L-06 10 61834071 61834071 C T ANK3 Missense_Mutation p.E2190K 0.05 benign(0.01) TCGA-ER-A42L-06 10 67862998 67862998 C T CTNNA3 Missense_Mutation p.E632K 0.09 deleterious(0.01) unknown(0) TCGA-ER-A42L-06 10 69672350 69672350 T G SIRT1 Missense_Mutation p.L493V 0.11 deleterious(0.01) benign(0.226) TCGA-ER-A42L-06 10 70760185 70760185 C A KIAA1279 Missense_Mutation p.N144K 0.11 tolerated(0.16) benign(0.218) TCGA-ER-A42L-06 10 71871389 71871389 G A H2AFY2 Missense_Mutation p.E357K 0.09 deleterious(0) probably_damaging(0.954) TCGA-ER-A42L-06 10 72292520 72292520 C T PALD1 Silent p.F259F 0.11 TCGA-ER-A42L-06 10 73494026 73494026 C T CDH23 Silent p.D1383D 0.17 TCGA-ER-A42L-06 10 75051170 75051170 G A TTC18 Nonsense_Mutation p.R755* 0.07 TCGA-ER-A42L-06 10 75101169 75101169 G A TTC18 Silent p.L260L 0.06 TCGA-ER-A42L-06 10 75407604 75407604 C T SYNPO2L Silent p.G602G 0.09 TCGA-ER-A42L-06 10 86131489 86131489 C T CCSER2 Silent p.S227S 0.05 TCGA-ER-A42L-06 10 90499824 90499824 G A LIPK Silent p.Q296Q 0.07 TCGA-ER-A42L-06 10 91144316 91144316 G A IFIT1B Missense_Mutation p.E416K 0.05 tolerated(0.43) benign(0.002) TCGA-ER-A42L-06 10 94392288 94392288 C T KIF11 Missense_Mutation p.H514Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-ER-A42L-06 10 95790763 95790763 G A PLCE1 5'UTR 0.15 TCGA-ER-A42L-06 10 96480210 96480210 G A CYP2C18 Missense_Mutation p.D293N 0.07 tolerated(0.19) benign(0.276) TCGA-ER-A42L-06 10 96480225 96480225 G T CYP2C18 Nonsense_Mutation p.G298* 0.06 TCGA-ER-A42L-06 10 96495290 96495290 G A CYP2C18 3'UTR 0.11 TCGA-ER-A42L-06 10 97605144 97605144 G A ENTPD1 Missense_Mutation p.E214K 0.06 tolerated(0.8) benign(0.001) TCGA-ER-A42L-06 10 97791583 97791583 G A CC2D2B Missense_Mutation p.G342R 0.08 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 11 100920694 100920694 G A PGR Silent p.F818F 0.16 TCGA-ER-A42L-06 11 101323733 101323733 C T TRPC6 Missense_Mutation p.G917R 0.07 tolerated(0.14) benign(0.079) TCGA-ER-A42L-06 11 101344500 101344500 C T TRPC6 Silent p.R583R 0.12 TCGA-ER-A42L-06 11 101762199 101762199 G A ANGPTL5 Silent p.H326H 0.08 TCGA-ER-A42L-06 11 10603527 10603527 C G MRVI1 Missense_Mutation p.K749N 0.07 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 11 106558339 106558339 G A GUCY1A2 Missense_Mutation p.S743L 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-ER-A42L-06 11 113140986 113140986 G A NCAM1 Silent p.L785L 0.09 TCGA-ER-A42L-06 11 113675655 113675655 G A USP28 Silent p.P838P 0.10 TCGA-ER-A42L-06 11 113675656 113675656 G A USP28 Missense_Mutation p.P838L 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 11 117109436 117109436 C T RNF214 Missense_Mutation p.S76L 0.05 tolerated_low_confidence(0.08) benign(0.23) TCGA-ER-A42L-06 11 117389347 117389347 G A DSCAML1 Silent p.I508I 0.17 TCGA-ER-A42L-06 11 122756683 122756683 C T C11orf63 Silent p.S42S 0.07 TCGA-ER-A42L-06 11 123753855 123753855 C T TMEM225 Nonsense_Mutation p.W223* 0.06 TCGA-ER-A42L-06 11 123900446 123900446 G A OR10G8 Silent p.G39G 0.07 TCGA-ER-A42L-06 11 128843387 128843387 G A ARHGAP32 Intron 0.10 TCGA-ER-A42L-06 11 129734652 129734652 G A NFRKB Missense_Mutation p.P1315S 0.06 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ER-A42L-06 11 134076558 134076558 G A NCAPD3 Missense_Mutation p.R318C 0.09 tolerated(0.19) benign(0.002) TCGA-ER-A42L-06 11 134131179 134131179 C T ACAD8 Silent p.S284S 0.09 TCGA-ER-A42L-06 11 1629390 1629390 C T KRTAP5-3 Missense_Mutation p.G76S 0.10 tolerated(0.62) unknown(0) TCGA-ER-A42L-06 11 17316991 17316991 G A NUCB2 Missense_Mutation p.E41K 0.06 tolerated(0.11) benign(0.04) TCGA-ER-A42L-06 11 17544345 17544345 C T USH1C Silent p.Q335Q 0.08 TCGA-ER-A42L-06 11 22301235 22301235 G A ANO5 Missense_Mutation p.G889E 0.08 tolerated(0.37) benign(0.05) TCGA-ER-A42L-06 11 26620447 26620447 G A ANO3 Missense_Mutation p.E525K 0.15 tolerated(0.35) probably_damaging(0.999) TCGA-ER-A42L-06 11 27078847 27078847 G A BBOX1 Missense_Mutation p.E107K 0.06 tolerated(0.1) benign(0.065) TCGA-ER-A42L-06 11 30974079 30974079 G A DCDC1 Silent p.G876G 0.12 TCGA-ER-A42L-06 11 31312231 31312231 C T DCDC1 Missense_Mutation p.G308E 0.11 tolerated(0.07) probably_damaging(0.988) TCGA-ER-A42L-06 11 36595461 36595461 G A RAG1 Missense_Mutation p.E203K 0.06 deleterious_low_confidence(0.02) benign(0.002) TCGA-ER-A42L-06 11 44074232 44074232 C T ACCSL Missense_Mutation p.P265S 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-ER-A42L-06 11 46564815 46564815 G A AMBRA1 Missense_Mutation p.S251F 0.13 tolerated_low_confidence(0.09) probably_damaging(0.99) TCGA-ER-A42L-06 11 46625138 46625138 G A HARBI1 Missense_Mutation p.S331F 0.10 deleterious(0.04) benign(0.133) TCGA-ER-A42L-06 11 46911083 46911083 C T LRP4 Silent p.G698G 0.06 TCGA-ER-A42L-06 11 48327960 48327960 C T OR4S1 Silent p.S62S 0.06 TCGA-ER-A42L-06 11 4967879 4967879 G A OR51A4 Missense_Mutation p.S151F 0.05 tolerated(0.19) benign(0.005) TCGA-ER-A42L-06 11 541605 541605 G A LRRC56 Silent p.E82E 0.12 TCGA-ER-A42L-06 11 55036748 55036748 G A TRIM48 Silent p.Q203Q 0.12 TCGA-ER-A42L-06 11 55135483 55135483 C T OR4A15 Missense_Mutation p.L42F 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.754) TCGA-ER-A42L-06 11 55371344 55371344 G A OR4C11 Missense_Mutation p.P169L 0.05 deleterious(0) probably_damaging(0.981) TCGA-ER-A42L-06 11 55587576 55587576 C T OR5D18 Silent p.S157S 0.07 TCGA-ER-A42L-06 11 55735698 55735698 C T OR10AG1 Missense_Mutation p.G81E 0.06 deleterious(0.04) benign(0.167) TCGA-ER-A42L-06 11 56000028 56000028 C T OR5T2 Missense_Mutation p.E212K 0.04 tolerated(0.28) possibly_damaging(0.461) TCGA-ER-A42L-06 11 56310002 56310002 C T OR5M11 Missense_Mutation p.M244I 0.05 deleterious(0.03) benign(0.002) TCGA-ER-A42L-06 11 56310459 56310459 G A OR5M11 Missense_Mutation p.S92F 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-ER-A42L-06 11 56380886 56380886 G A OR5M1 Silent p.F31F 0.07 TCGA-ER-A42L-06 11 56511000 56511000 G A OR9G4 Silent p.I96I 0.07 TCGA-ER-A42L-06 11 5664747 5664747 C T TRIM34 Silent p.S425S 0.07 TCGA-ER-A42L-06 11 56757020 56757020 G A OR5AK2 Missense_Mutation p.G211E 0.07 deleterious(0.03) benign(0.008) TCGA-ER-A42L-06 11 56949832 56949832 C T LRRC55 Silent p.A155A 0.11 TCGA-ER-A42L-06 11 57379246 57379246 C T SERPING1 Silent p.N362N 0.05 TCGA-ER-A42L-06 11 6007822 6007822 G A OR52L1 Silent p.I113I 0.08 TCGA-ER-A42L-06 11 63278557 63278557 C T LGALS12 Silent p.L203L 0.10 TCGA-ER-A42L-06 11 65784384 65784384 C T CATSPER1 Missense_Mutation p.G774R 0.19 deleterious(0) probably_damaging(0.974) TCGA-ER-A42L-06 11 66062028 66062028 C T TMEM151A Missense_Mutation p.A104V 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-ER-A42L-06 11 67401709 67401709 G A TBX10 Missense_Mutation p.S167F 0.06 deleterious(0) probably_damaging(0.992) TCGA-ER-A42L-06 11 6789484 6789484 C T OR2AG2 Silent p.K235K 0.07 TCGA-ER-A42L-06 11 6816142 6816142 C T OR6A2 Silent p.R266R 0.06 TCGA-ER-A42L-06 11 6816143 6816143 C T OR6A2 Missense_Mutation p.R266Q 0.07 deleterious(0.04) probably_damaging(1) TCGA-ER-A42L-06 11 6891861 6891861 C T OR10A2 Silent p.V292V 0.12 TCGA-ER-A42L-06 11 71293716 71293716 G A KRTAP5-11 Silent p.S56S 0.04 TCGA-ER-A42L-06 11 74985242 74985242 G A ARRB1 Missense_Mutation p.P264S 0.05 tolerated(0.14) benign(0.329) TCGA-ER-A42L-06 11 76924904 76924904 G A MYO7A Splice_Site p.X2147_splice 0.10 TCGA-ER-A42L-06 11 77412966 77412966 A G RSF1 Silent p.H436H 0.07 TCGA-ER-A42L-06 11 77917056 77917056 C T USP35 Missense_Mutation p.L456F 0.06 deleterious(0.01) unknown(0) TCGA-ER-A42L-06 11 7847217 7847217 G A OR5P3 Silent p.L101L 0.07 TCGA-ER-A42L-06 11 82880409 82880409 C T PCF11 Missense_Mutation p.P1011L 0.11 deleterious(0) possibly_damaging(0.827) TCGA-ER-A42L-06 11 85445563 85445563 G A SYTL2 Missense_Mutation p.P269L 0.05 deleterious(0) possibly_damaging(0.626) TCGA-ER-A42L-06 11 86086100 86086100 C T CCDC81 5'UTR 0.15 TCGA-ER-A42L-06 11 8704301 8704301 C T RPL27A 5'UTR 0.11 TCGA-ER-A42L-06 11 92087443 92087443 G A FAT3 Missense_Mutation p.G722E 0.05 benign(0.044) TCGA-ER-A42L-06 11 93778992 93778992 G A HEPHL1 Silent p.V108V 0.14 TCGA-ER-A42L-06 11 94861676 94861676 C T ENDOD1 Missense_Mutation p.P146S 0.05 deleterious(0) possibly_damaging(0.904) TCGA-ER-A42L-06 12 101480466 101480466 G A ANO4 Missense_Mutation p.G487E 0.08 deleterious(0) probably_damaging(0.913) TCGA-ER-A42L-06 12 102043085 102043085 G A MYBPC1 Missense_Mutation p.R390Q 0.09 deleterious(0) benign(0.151) TCGA-ER-A42L-06 12 102069104 102069104 G A MYBPC1 Silent p.E941E 0.15 TCGA-ER-A42L-06 12 103234200 103234200 C T PAH Silent p.K431K 0.12 TCGA-ER-A42L-06 12 10568224 10568224 C T KLRC3 Missense_Mutation p.D253N 0.10 tolerated_low_confidence(0.6) benign(0) TCGA-ER-A42L-06 12 107155189 107155189 A C RFX4 Missense_Mutation p.Q726P 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ER-A42L-06 12 10783684 10783684 G A STYK1 Silent p.D137D 0.15 TCGA-ER-A42L-06 12 111162496 111162496 G A PPP1CC Silent p.I164I 0.12 TCGA-ER-A42L-06 12 113327843 113327843 G A RPH3A Silent p.G526G 0.04 TCGA-ER-A42L-06 12 113553050 113553050 G A RASAL1 Silent p.F341F 0.14 TCGA-ER-A42L-06 12 11461597 11461597 C T PRB4 Missense_Mutation p.G107E 0.05 deleterious_low_confidence(0) unknown(0) TCGA-ER-A42L-06 12 11546671 11546671 G A PRB2 Missense_Mutation p.P114L 0.03 tolerated(0.19) unknown(0) TCGA-ER-A42L-06 12 116429580 116429580 G A MED13L Missense_Mutation p.P1060L 0.10 deleterious(0.03) unknown(0) TCGA-ER-A42L-06 12 117652958 117652958 G A NOS1 3'Flank 0.11 TCGA-ER-A42L-06 12 117914343 117914343 G A KSR2 Silent p.I836I 0.18 TCGA-ER-A42L-06 12 120156570 120156570 G A CIT Missense_Mutation p.R1313C 0.14 deleterious(0) probably_damaging(0.991) TCGA-ER-A42L-06 12 121098952 121098952 G A CABP1 Missense_Mutation p.G340R 0.14 deleterious(0.03) possibly_damaging(0.88) TCGA-ER-A42L-06 12 122013722 122013722 G A KDM2B Missense_Mutation p.P105L 0.06 deleterious(0) probably_damaging(0.995) TCGA-ER-A42L-06 12 122623425 122623425 G A MLXIP Missense_Mutation p.M816I 0.13 deleterious(0.02) benign(0.049) TCGA-ER-A42L-06 12 122983377 122983377 G A ZCCHC8 Missense_Mutation p.P80L 0.14 deleterious(0.01) benign(0.249) TCGA-ER-A42L-06 12 12483126 12483126 G A MANSC1 Silent p.Y377Y 0.08 TCGA-ER-A42L-06 12 125834065 125834065 G A TMEM132B Silent p.T40T 0.09 TCGA-ER-A42L-06 12 126138177 126138177 C T TMEM132B Missense_Mutation p.P720S 0.06 tolerated(0.43) benign(0.015) TCGA-ER-A42L-06 12 129559022 129559022 C T TMEM132D Missense_Mutation p.E900K 0.08 tolerated(0.74) benign(0.032) TCGA-ER-A42L-06 12 132471341 132471341 C - EP400 Frame_Shift_Del p.Q738Kfs*2 0.09 TCGA-ER-A42L-06 12 13715621 13715621 G A GRIN2B 3'UTR 0.07 TCGA-ER-A42L-06 12 14836030 14836030 G A GUCY2C Missense_Mutation p.S186F 0.11 deleterious(0.01) possibly_damaging(0.739) TCGA-ER-A42L-06 12 18847964 18847964 C T PLCZ1 Silent p.G447G 0.11 TCGA-ER-A42L-06 12 21453500 21453500 T C SLCO1A2 Missense_Mutation p.D231G 0.13 deleterious(0.03) possibly_damaging(0.639) TCGA-ER-A42L-06 12 2224405 2224405 G A CACNA1C Missense_Mutation p.S22N 0.31 tolerated_low_confidence(0.15) benign(0.003) TCGA-ER-A42L-06 12 301750 301750 G C SLC6A12 Missense_Mutation p.P532R 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 12 30824022 30824022 T C IPO8 Silent p.L306L 0.13 TCGA-ER-A42L-06 12 32945316 32945316 C T PKP2 3'UTR 0.08 TCGA-ER-A42L-06 12 32949216 32949229 AGGGAGAGTTTCTT - PKP2 Frame_Shift_Del p.K768Rfs*8 0.12 TCGA-ER-A42L-06 12 33592474 33592474 C T SYT10 5'UTR 0.15 TCGA-ER-A42L-06 12 40114710 40114710 G A C12orf40 Missense_Mutation p.R539K 0.14 tolerated(1) benign(0.023) TCGA-ER-A42L-06 12 41463834 41463834 C T CNTN1 Silent p.F1018F 0.06 TCGA-ER-A42L-06 12 44913862 44913862 C T NELL2 Missense_Mutation p.E826K 0.10 tolerated(0.27) probably_damaging(0.988) TCGA-ER-A42L-06 12 4708927 4708927 G A DYRK4 Missense_Mutation p.G252R 0.06 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 12 49087539 49087539 G A CCNT1 Silent p.V486V 0.07 TCGA-ER-A42L-06 12 4920725 4920725 G A KCNA6 Silent p.R506R 0.15 TCGA-ER-A42L-06 12 49433792 49433792 G A KMT2D Silent p.F2587F 0.12 TCGA-ER-A42L-06 12 49943339 49943339 C T KCNH3 Silent p.H528H 0.07 TCGA-ER-A42L-06 12 51888745 51888745 A G SLC4A8 Missense_Mutation p.K929R 0.09 tolerated(0.14) possibly_damaging(0.497) TCGA-ER-A42L-06 12 52845835 52845835 T C KRT6B Missense_Mutation p.S10G 0.10 tolerated(0.11) unknown(0) TCGA-ER-A42L-06 12 52967233 52967233 C T KRT74 Missense_Mutation p.G110E 0.12 deleterious(0) possibly_damaging(0.847) TCGA-ER-A42L-06 12 53012322 53012322 G A KRT73 5'UTR 0.10 TCGA-ER-A42L-06 12 53818527 53818527 C T AMHR2 Silent p.S89S 0.18 TCGA-ER-A42L-06 12 54915017 54915017 G A NCKAP1L Missense_Mutation p.E625K 0.10 deleterious(0.03) possibly_damaging(0.523) TCGA-ER-A42L-06 12 55357630 55357630 C T TESPA1 Missense_Mutation p.R184Q 0.07 deleterious(0.02) probably_damaging(1) TCGA-ER-A42L-06 12 55688295 55688295 G A OR6C6 Missense_Mutation p.S241F 0.09 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-ER-A42L-06 12 55725806 55725806 G A OR6C3 Missense_Mutation p.E108K 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A42L-06 12 5604142 5604142 C T NTF3 Silent p.I267I 0.22 TCGA-ER-A42L-06 12 56092216 56092216 G A ITGA7 Silent p.F385F 0.17 TCGA-ER-A42L-06 12 57175790 57175790 C T HSD17B6 Missense_Mutation p.L116F 0.17 tolerated(0.45) benign(0.001) TCGA-ER-A42L-06 12 57574473 57574473 C T LRP1 Nonsense_Mutation p.Q1804* 0.20 TCGA-ER-A42L-06 12 59276766 59276766 G A LRIG3 Silent p.L455L 0.14 TCGA-ER-A42L-06 12 6457950 6457950 G A SCNN1A Silent p.V583V 0.14 TCGA-ER-A42L-06 12 66639026 66639026 G A IRAK3 Missense_Mutation p.R433K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A42L-06 12 66639027 66639027 A C IRAK3 Missense_Mutation p.R433S 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 12 668526 668526 G A B4GALNT3 Missense_Mutation p.G943S 0.12 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 12 6909590 6909590 C T CD4 Missense_Mutation p.S56F 0.15 tolerated(0.16) probably_damaging(0.963) TCGA-ER-A42L-06 12 7084302 7084302 C T EMG1 Missense_Mutation p.L154F 0.16 deleterious(0) TCGA-ER-A42L-06 12 7548693 7548693 G A CD163L1 Missense_Mutation p.S683F 0.16 deleterious(0) probably_damaging(0.953) TCGA-ER-A42L-06 12 7559397 7559397 C T CD163L1 Missense_Mutation p.G273E 0.13 deleterious(0) possibly_damaging(0.807) TCGA-ER-A42L-06 12 76740176 76740176 C T BBS10 Missense_Mutation p.R530K 0.06 tolerated(1) benign(0) TCGA-ER-A42L-06 12 7803718 7803718 C T APOBEC1 Silent p.R154R 0.06 TCGA-ER-A42L-06 12 7805371 7805371 C T APOBEC1 Silent p.E35E 0.14 TCGA-ER-A42L-06 12 7843048 7843048 C T GDF3 Nonsense_Mutation p.W174* 0.12 TCGA-ER-A42L-06 12 78513168 78513168 C T NAV3 Silent p.S1064S 0.11 TCGA-ER-A42L-06 12 7883508 7883508 C T CLEC4C Missense_Mutation p.D128N 0.12 tolerated(1) possibly_damaging(0.734) TCGA-ER-A42L-06 12 7967020 7967020 G A SLC2A14 Silent p.I485I 0.06 TCGA-ER-A42L-06 12 81112829 81112829 G A MYF5 Silent p.%3D 0.10 TCGA-ER-A42L-06 12 8671664 8671664 C T CLEC4D Missense_Mutation p.P98S 0.11 tolerated(0.08) benign(0.099) TCGA-ER-A42L-06 12 8991804 8991804 C T A2ML1 Missense_Mutation p.P356S 0.11 deleterious(0.03) probably_damaging(0.927) TCGA-ER-A42L-06 12 94072788 94072788 C T CRADD Missense_Mutation p.P80S 0.06 tolerated(0.44) probably_damaging(0.996) TCGA-ER-A42L-06 13 111944683 111944683 A G ARHGEF7 3'UTR 0.14 TCGA-ER-A42L-06 13 113176671 113176671 G A TUBGCP3 Nonsense_Mutation p.Q570* 0.06 TCGA-ER-A42L-06 13 19997169 19997169 C T TPTE2 3'UTR 0.09 TCGA-ER-A42L-06 13 24823781 24823781 C T SPATA13 Missense_Mutation p.S607L 0.10 deleterious(0) benign(0.231) TCGA-ER-A42L-06 13 25027758 25027758 G A PARP4 Silent p.I931I 0.11 TCGA-ER-A42L-06 13 25274959 25274959 C T ATP12A Missense_Mutation p.P600S 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A42L-06 13 25284954 25284954 C T ATP12A Silent p.I980I 0.12 TCGA-ER-A42L-06 13 39265947 39265947 G A FREM2 Missense_Mutation p.G1489E 0.07 tolerated(0.07) benign(0.235) TCGA-ER-A42L-06 13 46060684 46060684 T A COG3 Missense_Mutation p.F300I 0.07 deleterious(0) probably_damaging(0.935) TCGA-ER-A42L-06 13 86370170 86370170 C T SLITRK6 Silent p.K158K 0.05 TCGA-ER-A42L-06 13 92346025 92346025 G A GPC5 Missense_Mutation p.D304N 0.05 tolerated(1) benign(0.008) TCGA-ER-A42L-06 13 92797125 92797125 C T GPC5 Missense_Mutation p.L482F 0.06 tolerated(0.71) benign(0.015) TCGA-ER-A42L-06 13 97639743 97639743 G A OXGR1 Missense_Mutation p.H91Y 0.10 tolerated(0.34) possibly_damaging(0.557) TCGA-ER-A42L-06 14 100184455 100184455 C T CYP46A1 Silent p.I324I 0.08 TCGA-ER-A42L-06 14 102348516 102348516 C T PPP2R5C Nonsense_Mutation p.R136* 0.10 TCGA-ER-A42L-06 14 103969565 103969565 C T MARK3 3'UTR 0.15 TCGA-ER-A42L-06 14 105416176 105416176 A T AHNAK2 Missense_Mutation p.L1871H 0.11 possibly_damaging(0.878) TCGA-ER-A42L-06 14 105684023 105684023 G A BRF1 Missense_Mutation p.R544W 0.08 deleterious(0) probably_damaging(0.987) TCGA-ER-A42L-06 14 106174844 106174844 G A IGHA1 Silent p.F53F 0.09 TCGA-ER-A42L-06 14 106552703 106552703 G A IGHV3-9 Silent p.F9F 0.09 TCGA-ER-A42L-06 14 106692121 106692121 C T IGHV3-21 Missense_Mutation p.E2K 0.12 tolerated_low_confidence(0.12) benign(0.026) TCGA-ER-A42L-06 14 106829759 106829759 C T IGHV4-34 Silent p.G68G 0.13 TCGA-ER-A42L-06 14 106845771 106845771 C T IGHV3-35 Missense_Mutation p.E2K 0.14 tolerated_low_confidence(0.16) benign(0.062) TCGA-ER-A42L-06 14 20344704 20344704 C T OR4K2 Missense_Mutation p.S93F 0.08 deleterious(0) benign(0.167) TCGA-ER-A42L-06 14 20344906 20344906 C T OR4K2 Silent p.V160V 0.13 TCGA-ER-A42L-06 14 20443780 20443780 G A OR4K15 Missense_Mutation p.E35K 0.08 deleterious(0.01) possibly_damaging(0.484) TCGA-ER-A42L-06 14 20528836 20528836 C T OR4L1 Silent p.F211F 0.08 TCGA-ER-A42L-06 14 20666514 20666514 G A OR11G2 Silent p.K340K 0.08 TCGA-ER-A42L-06 14 22192302 22192302 C T TRAV3 Missense_Mutation p.P26L 0.18 tolerated(0.11) benign(0.117) TCGA-ER-A42L-06 14 22309420 22309420 G A TRAV12-1 5'Flank 0.10 TCGA-ER-A42L-06 14 22592107 22592107 C T TRAV26-1 Silent p.I64I 0.07 TCGA-ER-A42L-06 14 22600910 22600910 G A TRAV8-7 Silent p.K85K 0.12 TCGA-ER-A42L-06 14 23888759 23888759 C T MYH7 Silent p.K1262K 0.09 TCGA-ER-A42L-06 14 23902781 23902781 C T MYH7 Missense_Mutation p.R54Q 0.16 tolerated(0.07) benign(0.261) TCGA-ER-A42L-06 14 23902902 23902902 G A MYH7 Missense_Mutation p.P14S 0.06 tolerated(0.08) benign(0.023) TCGA-ER-A42L-06 14 38281585 38281585 C T TTC6 Missense_Mutation p.L1546F 0.07 deleterious(0.01) possibly_damaging(0.713) TCGA-ER-A42L-06 14 42356244 42356244 C T LRFN5 Missense_Mutation p.S139F 0.18 deleterious(0.03) possibly_damaging(0.866) TCGA-ER-A42L-06 14 60923683 60923683 G A C14orf39 Missense_Mutation p.P437L 0.15 deleterious(0.03) benign(0.003) TCGA-ER-A42L-06 14 63174609 63174609 C T KCNH5 Missense_Mutation p.D862N 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A42L-06 14 63447728 63447728 C T KCNH5 Silent p.T268T 0.09 TCGA-ER-A42L-06 14 65252478 65252478 C T SPTB Silent p.L1251L 0.15 TCGA-ER-A42L-06 14 70633856 70633856 G A SLC8A3 Silent p.T428T 0.11 TCGA-ER-A42L-06 14 70713553 70713553 G A ADAM21P1 RNA 0.05 TCGA-ER-A42L-06 14 71215675 71215675 G A MAP3K9 Silent p.I399I 0.11 TCGA-ER-A42L-06 14 77944926 77944926 G A ISM2 Missense_Mutation p.S369F 0.12 tolerated(0.48) benign(0.001) TCGA-ER-A42L-06 14 91791183 91791183 C T CCDC88C Missense_Mutation p.E428K 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 14 94756420 94756420 C T SERPINA10 Missense_Mutation p.D171N 0.21 tolerated(0.13) benign(0.018) TCGA-ER-A42L-06 15 20170334 20170334 G A IGHV1OR15-9 Silent p.I7I 0.13 TCGA-ER-A42L-06 15 22368758 22368758 C T OR4M2 Silent p.F61F 0.06 TCGA-ER-A42L-06 15 22382647 22382647 C T OR4N4 Missense_Mutation p.L59F 0.05 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 15 22383180 22383180 C T OR4N4 Silent p.A236A 0.05 TCGA-ER-A42L-06 15 22709218 22709218 G A AC116165.1 5'Flank 0.06 TCGA-ER-A42L-06 15 24923710 24923710 C T NPAP1 Missense_Mutation p.S899F 0.06 tolerated(0.18) possibly_damaging(0.551) TCGA-ER-A42L-06 15 25299365 25299365 G A SNORD116-2 RNA 0.07 TCGA-ER-A42L-06 15 25335155 25335155 G A SNHG14 Intron 0.19 TCGA-ER-A42L-06 15 25424235 25424235 C T SNORD115-6 5'Flank 0.24 TCGA-ER-A42L-06 15 25424236 25424236 C T SNORD115-6 5'Flank 0.24 TCGA-ER-A42L-06 15 26812824 26812824 T C GABRB3 Missense_Mutation p.I247V 0.10 tolerated(0.14) probably_damaging(0.992) TCGA-ER-A42L-06 15 27572162 27572162 C T GABRG3 Silent p.I159I 0.19 TCGA-ER-A42L-06 15 32925188 32925188 G A ARHGAP11A Missense_Mutation p.D372N 0.16 tolerated(0.12) possibly_damaging(0.851) TCGA-ER-A42L-06 15 34642950 34642950 G A NUTM1 Silent p.L257L 0.09 TCGA-ER-A42L-06 15 40099227 40099227 G A GPR176 Silent p.F135F 0.05 TCGA-ER-A42L-06 15 40293386 40293386 C T EIF2AK4 Silent p.S1040S 0.14 TCGA-ER-A42L-06 15 41488011 41488011 G A EXD1 Nonsense_Mutation p.Q170* 0.20 TCGA-ER-A42L-06 15 42034879 42034879 C T MGA Missense_Mutation p.P1574L 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 15 42170571 42170571 G A SPTBN5 Silent p.L1147L 0.10 TCGA-ER-A42L-06 15 50528265 50528265 C T SLC27A2 Missense_Mutation p.A612V 0.09 tolerated(0.09) benign(0.394) TCGA-ER-A42L-06 15 51689713 51689713 C T GLDN Silent p.G245G 0.23 TCGA-ER-A42L-06 15 51780227 51780227 G A DMXL2 Missense_Mutation p.S1714F 0.13 deleterious(0) possibly_damaging(0.843) TCGA-ER-A42L-06 15 51790822 51790822 G A DMXL2 Silent p.F1533F 0.15 TCGA-ER-A42L-06 15 54305384 54305384 G A UNC13C Missense_Mutation p.R95Q 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ER-A42L-06 15 55522634 55522634 G A RAB27A Silent p.I68I 0.14 TCGA-ER-A42L-06 15 55912176 55912176 G A PRTG 3'UTR 0.09 TCGA-ER-A42L-06 15 57734655 57734655 G A CGNL1 Silent p.G594G 0.09 TCGA-ER-A42L-06 15 63970504 63970504 T A HERC1 Missense_Mutation p.I2204F 0.14 benign(0.146) TCGA-ER-A42L-06 15 65553276 65553276 G C PARP16 Missense_Mutation p.N260K 0.11 deleterious(0) possibly_damaging(0.856) TCGA-ER-A42L-06 15 65917776 65917776 G A SLC24A1 Missense_Mutation p.G453D 0.13 probably_damaging(0.959) TCGA-ER-A42L-06 15 66727455 66727455 G T MAP2K1 Missense_Mutation p.K57N 0.09 deleterious(0) probably_damaging(0.994) TCGA-ER-A42L-06 15 68606139 68606139 C T ITGA11 Missense_Mutation p.E954K 0.18 deleterious(0) probably_damaging(0.958) TCGA-ER-A42L-06 15 72501045 72501045 G A PKM Silent p.V251V 0.12 TCGA-ER-A42L-06 15 74426768 74426768 T G ISLR2 Missense_Mutation p.L558R 0.14 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 15 74467278 74467278 G A ISLR Missense_Mutation p.E27K 0.12 tolerated(0.18) benign(0.023) TCGA-ER-A42L-06 15 74467596 74467596 G A ISLR Missense_Mutation p.E133K 0.07 tolerated(0.25) benign(0.348) TCGA-ER-A42L-06 15 74528958 74528958 C T CCDC33 5'UTR 0.22 TCGA-ER-A42L-06 15 75014710 75014710 T G CYP1A1 Silent p.L243L 0.14 TCGA-ER-A42L-06 15 76995231 76995231 G A SCAPER Missense_Mutation p.P787L 0.21 tolerated(0.06) probably_damaging(1) TCGA-ER-A42L-06 15 78213894 78213894 G A RP11-114H24.7 Intron 0.07 TCGA-ER-A42L-06 15 78841204 78841204 A T PSMA4 Missense_Mutation p.Q235L 0.12 tolerated(0.25) benign(0) TCGA-ER-A42L-06 15 78894516 78894516 C T CHRNA3 Silent p.K156K 0.14 TCGA-ER-A42L-06 15 83932835 83932835 C T BNC1 Missense_Mutation p.E390K 0.16 deleterious(0) probably_damaging(0.985) TCGA-ER-A42L-06 15 84257427 84257427 T A SH3GL3 Missense_Mutation p.S248T 0.11 deleterious(0.04) benign(0.001) TCGA-ER-A42L-06 15 86838568 86838568 G A AGBL1 Missense_Mutation p.G722E 0.07 deleterious(0.01) possibly_damaging(0.789) TCGA-ER-A42L-06 15 89401577 89401577 G A ACAN Missense_Mutation p.A1921T 0.12 tolerated(0.48) benign(0.222) TCGA-ER-A42L-06 15 90246460 90246460 G A WDR93 Intron 0.11 TCGA-ER-A42L-06 15 91421424 91421424 C T FURIN Missense_Mutation p.P244S 0.10 tolerated(0.09) probably_damaging(0.947) TCGA-ER-A42L-06 15 92987906 92987906 G A ST8SIA2 Missense_Mutation p.G197R 0.08 probably_damaging(1) TCGA-ER-A42L-06 15 93609287 93609287 G A RGMA Intron 0.16 TCGA-ER-A42L-06 15 94899296 94899296 C T MCTP2 Intron 0.09 TCGA-ER-A42L-06 15 99672416 99672416 C T SYNM Missense_Mutation p.S1283L 0.13 tolerated(0.09) benign(0.016) TCGA-ER-A42L-06 16 10626871 10626871 G A EMP2 Missense_Mutation p.P132L 0.07 tolerated(0.72) benign(0) TCGA-ER-A42L-06 16 10788403 10788403 G A TEKT5 Silent p.L110L 0.11 TCGA-ER-A42L-06 16 1129110 1129110 A G SSTR5 Missense_Mutation p.N81S 0.11 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 16 1254210 1254210 C T CACNA1H Missense_Mutation p.R735W 0.11 deleterious(0) possibly_damaging(0.847) TCGA-ER-A42L-06 16 15224295 15224295 C T RP11-1186N24.5 RNA 0.19 TCGA-ER-A42L-06 16 15917242 15917242 C T MYH11 Silent p.V124V 0.10 TCGA-ER-A42L-06 16 1621509 1621509 G A IFT140 Silent p.F517F 0.16 TCGA-ER-A42L-06 16 16271392 16271392 G A ABCC6 Missense_Mutation p.S836F 0.18 deleterious(0) probably_damaging(0.931) TCGA-ER-A42L-06 16 19078994 19078994 G A COQ7 Missense_Mutation p.C3Y 0.13 tolerated_low_confidence(0.09) probably_damaging(0.962) TCGA-ER-A42L-06 16 1997298 1997298 G A RPL3L Silent p.A195A 0.06 TCGA-ER-A42L-06 16 20043690 20043690 G A GPR139 Silent p.A143A 0.08 TCGA-ER-A42L-06 16 20448482 20448482 G A ACSM5 Missense_Mutation p.D473N 0.10 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 16 20999054 20999054 C T DNAH3 Silent p.V2281V 0.16 TCGA-ER-A42L-06 16 21063043 21063043 G A DNAH3 Silent p.L1396L 0.21 TCGA-ER-A42L-06 16 22122259 22122259 C T VWA3A Silent p.S211S 0.18 TCGA-ER-A42L-06 16 23716309 23716309 C T ERN2 Missense_Mutation p.R298Q 0.13 tolerated(0.58) benign(0.118) TCGA-ER-A42L-06 16 2814101 2814101 C T SRRM2 Missense_Mutation p.P1191L 0.13 unknown(0) TCGA-ER-A42L-06 16 28507568 28507568 T C APOBR Silent p.A402A 0.11 TCGA-ER-A42L-06 16 28997973 28997973 C T LAT Intron 0.08 TCGA-ER-A42L-06 16 29755617 29755617 C T C16orf54 Missense_Mutation p.R219Q 0.13 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-ER-A42L-06 16 29831123 29831123 C T PAGR1 3'UTR 0.13 TCGA-ER-A42L-06 16 29845323 29845323 C T MVP Silent p.N171N 0.27 TCGA-ER-A42L-06 16 30018571 30018571 C T DOC2A Missense_Mutation p.E193K 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-ER-A42L-06 16 30080251 30080251 C T ALDOA Silent p.I218I 0.22 TCGA-ER-A42L-06 16 30106448 30106448 C T YPEL3 Missense_Mutation p.G84E 0.19 deleterious(0) probably_damaging(0.997) TCGA-ER-A42L-06 16 30199816 30199816 G A CORO1A Silent p.K400K 0.22 TCGA-ER-A42L-06 16 31470837 31470837 C T ARMC5 5'UTR 0.26 TCGA-ER-A42L-06 16 4749108 4749108 C T ANKS3 Missense_Mutation p.D452N 0.14 deleterious(0.03) probably_damaging(0.966) TCGA-ER-A42L-06 16 50335086 50335086 G A ADCY7 Silent p.K443K 0.12 TCGA-ER-A42L-06 16 50711342 50711342 G A SNX20 Silent p.P32P 0.07 TCGA-ER-A42L-06 16 57059672 57059672 C T NLRC5 Missense_Mutation p.P273S 0.13 deleterious(0) benign(0.001) TCGA-ER-A42L-06 16 58537789 58537789 C A NDRG4 Missense_Mutation p.H89N 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 16 66945962 66945962 C T CDH16 Missense_Mutation p.G544S 0.15 tolerated(0.07) possibly_damaging(0.855) TCGA-ER-A42L-06 16 66946255 66946255 C T CDH16 Missense_Mutation p.E480K 0.14 deleterious(0.02) possibly_damaging(0.804) TCGA-ER-A42L-06 16 71015355 71015355 G A HYDIN Silent p.I1483I 0.10 TCGA-ER-A42L-06 16 715539 715539 C T WDR90 Intron 0.35 TCGA-ER-A42L-06 16 81095361 81095361 G A C16orf46 Missense_Mutation p.S198F 0.11 tolerated(0.07) probably_damaging(0.943) TCGA-ER-A42L-06 16 84224826 84224826 C T ADAD2 5'UTR 0.14 TCGA-ER-A42L-06 16 84495333 84495333 G A ATP2C2 Missense_Mutation p.R832K 0.11 tolerated(0.55) benign(0.004) TCGA-ER-A42L-06 16 87790031 87790031 C A KLHDC4 Nonsense_Mutation p.G82* 0.09 TCGA-ER-A42L-06 16 90002149 90002149 C T TUBB3 Silent p.A430A 0.24 TCGA-ER-A42L-06 17 10346652 10346652 C T MYH4 3'UTR 0.09 TCGA-ER-A42L-06 17 10415819 10415819 G A MYH1 Silent p.S351S 0.11 TCGA-ER-A42L-06 17 10429184 10429184 C T MYH2 Silent p.L1399L 0.10 TCGA-ER-A42L-06 17 11554575 11554575 G A DNAH9 Missense_Mutation p.E763K 0.09 benign(0.005) TCGA-ER-A42L-06 17 12893417 12893417 G A ARHGAP44 Missense_Mutation p.E796K 0.10 tolerated_low_confidence(0.14) benign(0.003) TCGA-ER-A42L-06 17 17701473 17701473 G A RAI1 Silent p.E1737E 0.12 TCGA-ER-A42L-06 17 3336752 3336752 G A OR1E2 Silent p.F128F 0.11 TCGA-ER-A42L-06 17 33768054 33768054 G A SLFN13 Missense_Mutation p.P752S 0.08 deleterious(0) probably_damaging(0.992) TCGA-ER-A42L-06 17 37898582 37898582 C T GRB7 Missense_Mutation p.L33F 0.04 tolerated_low_confidence(0.09) unknown(0) TCGA-ER-A42L-06 17 40070007 40070007 C T ACLY Nonsense_Mutation p.W40* 0.07 TCGA-ER-A42L-06 17 41245117 41245117 G A BRCA1 Missense_Mutation p.P811S 0.06 tolerated(0.06) benign(0.134) TCGA-ER-A42L-06 17 42254167 42254167 G A ASB16 Missense_Mutation p.E211K 0.06 tolerated(0.92) benign(0.155) TCGA-ER-A42L-06 17 42477964 42477964 C T GPATCH8 Missense_Mutation p.S494N 0.05 tolerated(0.33) benign(0.021) TCGA-ER-A42L-06 17 45730068 45730068 C T KPNB1 Silent p.F36F 0.06 TCGA-ER-A42L-06 17 47246973 47246973 C T B4GALNT2 Silent p.D528D 0.12 TCGA-ER-A42L-06 17 48191657 48191657 C T SAMD14 Missense_Mutation p.S307N 0.10 tolerated(0.53) possibly_damaging(0.87) TCGA-ER-A42L-06 17 48191659 48191659 C A SAMD14 Silent p.L306L 0.10 TCGA-ER-A42L-06 17 51900950 51900950 G A KIF2B Missense_Mutation p.E186K 0.10 deleterious(0.04) possibly_damaging(0.783) TCGA-ER-A42L-06 17 53798202 53798202 C T TMEM100 Missense_Mutation p.S77N 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-ER-A42L-06 17 54555016 54555016 G A ANKFN1 Splice_Site p.X650_splice 0.08 TCGA-ER-A42L-06 17 61950039 61950039 G A CSH2 Silent p.F118F 0.08 TCGA-ER-A42L-06 17 62080994 62080994 C T C17orf72 3'Flank 0.07 TCGA-ER-A42L-06 17 62855899 62855899 G A LRRC37A3 Silent p.S1455S 0.08 TCGA-ER-A42L-06 17 66915564 66915564 G A ABCA8 Missense_Mutation p.L556F 0.16 deleterious(0.01) possibly_damaging(0.477) TCGA-ER-A42L-06 17 66992073 66992073 G A ABCA9 Missense_Mutation p.P1173L 0.06 tolerated(0.74) benign(0.012) TCGA-ER-A42L-06 17 7230054 7230054 G A NEURL4 Silent p.P356P 0.07 TCGA-ER-A42L-06 17 7247063 7247063 G A ACAP1 Missense_Mutation p.M189I 0.10 deleterious(0.04) benign(0) TCGA-ER-A42L-06 17 72588903 72588903 C T C17orf77 Missense_Mutation p.P240S 0.09 unknown(0) TCGA-ER-A42L-06 17 72956160 72956160 C T HID1 Silent p.V304V 0.11 TCGA-ER-A42L-06 17 7324749 7324749 C T SPEM1 Missense_Mutation p.S252F 0.12 deleterious(0.05) benign(0.001) TCGA-ER-A42L-06 17 73736029 73736029 G A ITGB4 Missense_Mutation p.D775N 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-ER-A42L-06 17 74004580 74004580 G A EVPL Missense_Mutation p.T1569M 0.13 deleterious(0.01) benign(0.086) TCGA-ER-A42L-06 17 74134115 74134115 C T FOXJ1 Nonsense_Mutation p.W195* 0.12 TCGA-ER-A42L-06 17 74288159 74288159 T C QRICH2 Silent p.Q717Q 0.12 TCGA-ER-A42L-06 17 74623617 74623617 G A ST6GALNAC1 Nonsense_Mutation p.Q294* 0.07 TCGA-ER-A42L-06 17 74774296 74774296 C T MFSD11 Silent p.F404F 0.07 TCGA-ER-A42L-06 17 74901259 74901259 C T MGAT5B Silent p.F244F 0.08 TCGA-ER-A42L-06 17 75212804 75212804 A G SEC14L1 3'UTR 0.09 TCGA-ER-A42L-06 17 7661946 7661946 G A DNAH2 Missense_Mutation p.E729K 0.09 benign(0.362) TCGA-ER-A42L-06 17 77757718 77757718 C T CBX2 Missense_Mutation p.P159L 0.07 deleterious(0) possibly_damaging(0.758) TCGA-ER-A42L-06 17 78336975 78336975 C T RNF213 Missense_Mutation p.S3810F 0.08 possibly_damaging(0.759) TCGA-ER-A42L-06 17 7984166 7984166 C T AC129492.6 3'UTR 0.05 TCGA-ER-A42L-06 17 80790344 80790344 C T ZNF750 5'UTR 0.08 TCGA-ER-A42L-06 17 8738707 8738707 G A PIK3R6 Silent p.I176I 0.14 TCGA-ER-A42L-06 18 13826326 13826326 C T MC5R Silent p.L188L 0.04 TCGA-ER-A42L-06 18 2890866 2890866 G A EMILIN2 Silent p.Q247Q 0.09 TCGA-ER-A42L-06 18 28934602 28934602 C T DSG1 Missense_Mutation p.P815S 0.07 tolerated(0.26) possibly_damaging(0.884) TCGA-ER-A42L-06 18 28992934 28992934 G A DSG4 Missense_Mutation p.M852I 0.05 deleterious(0.04) benign(0.008) TCGA-ER-A42L-06 18 28992987 28992987 A T DSG4 Missense_Mutation p.E870V 0.07 tolerated(0.11) possibly_damaging(0.666) TCGA-ER-A42L-06 18 40503608 40503608 G A RIT2 Nonsense_Mutation p.Q119* 0.07 TCGA-ER-A42L-06 18 43262489 43262489 C T SLC14A2 3'UTR 0.12 TCGA-ER-A42L-06 18 51025841 51025841 G A DCC Missense_Mutation p.E1358K 0.14 deleterious(0.03) benign(0.348) TCGA-ER-A42L-06 18 52896297 52896297 C T TCF4 Missense_Mutation p.D656N 0.09 deleterious(0) possibly_damaging(0.859) TCGA-ER-A42L-06 18 55143778 55143778 G A ONECUT2 Silent p.K446K 0.08 TCGA-ER-A42L-06 18 55143779 55143779 G A ONECUT2 Missense_Mutation p.E447K 0.08 deleterious(0.02) possibly_damaging(0.834) TCGA-ER-A42L-06 18 57115254 57115254 G A CCBE1 Missense_Mutation p.P246S 0.06 tolerated(0.08) benign(0.403) TCGA-ER-A42L-06 18 59221466 59221466 A G CDH20 Silent p.Q648Q 0.05 TCGA-ER-A42L-06 18 70417686 70417686 G A NETO1 Silent p.F384F 0.05 TCGA-ER-A42L-06 18 77477655 77477655 A T CTDP1 Missense_Mutation p.D730V 0.06 deleterious(0.01) possibly_damaging(0.772) TCGA-ER-A42L-06 19 10112453 10112453 C T COL5A3 Silent p.T318T 0.05 TCGA-ER-A42L-06 19 10254439 10254439 G A DNMT1 Intron 0.09 TCGA-ER-A42L-06 19 11169017 11169017 C T SMARCA4 Missense_Mutation p.P1504L 0.08 probably_damaging(0.996) TCGA-ER-A42L-06 19 1127626 1127626 G A SBNO2 Missense_Mutation p.P140S 0.09 tolerated_low_confidence(0.11) benign(0.044) TCGA-ER-A42L-06 19 12090399 12090399 C T ZNF763 3'UTR 0.15 TCGA-ER-A42L-06 19 1235004 1235004 G A C19orf26 Missense_Mutation p.R151C 0.11 deleterious(0) benign(0.299) TCGA-ER-A42L-06 19 12541954 12541954 T C ZNF443 Silent p.K344K 0.16 TCGA-ER-A42L-06 19 15807820 15807820 G A CYP4F12 Silent p.R500R 0.11 TCGA-ER-A42L-06 19 16860003 16860003 G A NWD1 Missense_Mutation p.G184R 0.17 deleterious(0.02) benign(0.043) TCGA-ER-A42L-06 19 17339705 17339705 G A OCEL1 Missense_Mutation p.G256R 0.14 tolerated(0.25) benign(0.004) TCGA-ER-A42L-06 19 17937534 17937534 G A JAK3 3'UTR 0.09 TCGA-ER-A42L-06 19 18497276 18497276 G A GDF15 Missense_Mutation p.V93M 0.11 deleterious(0.03) benign(0.384) TCGA-ER-A42L-06 19 18497277 18497277 G A GDF15 Splice_Site p.X93_splice 0.11 TCGA-ER-A42L-06 19 19414630 19414630 G A SUGP1 Missense_Mutation p.R189W 0.11 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 19 19654071 19654071 C T CILP2 Missense_Mutation p.T331I 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-ER-A42L-06 19 20829125 20829125 C T ZNF626 Silent p.R30R 0.05 TCGA-ER-A42L-06 19 22940045 22940045 C T ZNF99 3'Flank 0.10 TCGA-ER-A42L-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.20 tolerated(0.44) benign(0.023) TCGA-ER-A42L-06 19 23991579 23991579 G A RPSAP58 5'UTR 0.07 TCGA-ER-A42L-06 19 2827679 2827679 C T ZNF554 Missense_Mutation p.P64L 0.14 deleterious(0.05) possibly_damaging(0.604) TCGA-ER-A42L-06 19 2877690 2877690 C T ZNF556 Missense_Mutation p.S245F 0.09 deleterious(0.02) probably_damaging(0.921) TCGA-ER-A42L-06 19 2877928 2877928 C T ZNF556 Silent p.F324F 0.16 TCGA-ER-A42L-06 19 30934636 30934636 C T ZNF536 Missense_Mutation p.P56L 0.08 deleterious_low_confidence(0) benign(0.075) TCGA-ER-A42L-06 19 30934637 30934637 C T ZNF536 Silent p.P56P 0.08 TCGA-ER-A42L-06 19 3205976 3205976 G A NCLN Silent p.R416R 0.05 TCGA-ER-A42L-06 19 33135275 33135275 G A ANKRD27 Nonsense_Mutation p.R161* 0.21 TCGA-ER-A42L-06 19 33623343 33623343 C T WDR88 Missense_Mutation p.L90F 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-ER-A42L-06 19 34718336 34718336 C T LSM14A 3'UTR 0.22 TCGA-ER-A42L-06 19 34900345 34900345 C T PDCD2L Missense_Mutation p.H206Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 19 36505138 36505138 C T ALKBH6 5'UTR 0.08 TCGA-ER-A42L-06 19 37383142 37383142 T C ZNF829 Missense_Mutation p.Y265C 0.10 tolerated(0.05) benign(0.002) TCGA-ER-A42L-06 19 37660846 37660846 G A ZNF585A 5'UTR 0.15 TCGA-ER-A42L-06 19 38573180 38573180 G A SIPA1L3 Silent p.R325R 0.18 TCGA-ER-A42L-06 19 38860670 38860670 C T CATSPERG Missense_Mutation p.P1027S 0.15 deleterious(0.02) possibly_damaging(0.803) TCGA-ER-A42L-06 19 38946001 38946001 G A RYR1 Missense_Mutation p.E523K 0.20 benign(0.444) TCGA-ER-A42L-06 19 41509883 41509883 C T CYP2B6 Intron 0.17 TCGA-ER-A42L-06 19 42187961 42187961 T C CEACAM7 Missense_Mutation p.N154S 0.05 tolerated(0.07) possibly_damaging(0.89) TCGA-ER-A42L-06 19 42796863 42796863 C T CIC Silent p.P1107P 0.06 TCGA-ER-A42L-06 19 43093166 43093166 G A CEACAM8 Missense_Mutation p.S243F 0.07 tolerated(0.26) benign(0.063) TCGA-ER-A42L-06 19 43428899 43428899 G A PSG7 3'UTR 0.16 TCGA-ER-A42L-06 19 43674218 43674218 C T PSG5 3'UTR 0.06 TCGA-ER-A42L-06 19 43689022 43689022 C A PSG5 Silent p.R114R 0.09 TCGA-ER-A42L-06 19 46283407 46283407 G A DMPK 5'UTR 0.23 TCGA-ER-A42L-06 19 46347386 46347386 G A SYMPK Missense_Mutation p.S250F 0.05 deleterious(0) probably_damaging(0.995) TCGA-ER-A42L-06 19 46543619 46543619 G A IGFL4 Silent p.N42N 0.08 TCGA-ER-A42L-06 19 48965201 48965201 C T KCNJ14 Silent p.L74L 0.15 TCGA-ER-A42L-06 19 49657444 49657444 C T HRC Missense_Mutation p.E351K 0.09 tolerated(0.33) benign(0.131) TCGA-ER-A42L-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.10 TCGA-ER-A42L-06 19 51875529 51875529 T G NKG7 Missense_Mutation p.M64L 0.05 tolerated(1) benign(0) TCGA-ER-A42L-06 19 53013965 53013965 C T ZNF578 Missense_Mutation p.H111Y 0.06 tolerated(0.19) possibly_damaging(0.536) TCGA-ER-A42L-06 19 53056747 53056747 C T ZNF808 Missense_Mutation p.S193F 0.07 tolerated(0.71) benign(0.003) TCGA-ER-A42L-06 19 53209718 53209718 G A ZNF611 Missense_Mutation p.S197F 0.05 tolerated(0.74) probably_damaging(0.991) TCGA-ER-A42L-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.12 TCGA-ER-A42L-06 19 54074956 54074956 G A ZNF331 Silent p.L36L 0.04 TCGA-ER-A42L-06 19 54074957 54074957 G A ZNF331 Missense_Mutation p.E37K 0.04 deleterious(0) probably_damaging(0.973) TCGA-ER-A42L-06 19 5456609 5456609 C T ZNRF4 Silent p.F369F 0.07 TCGA-ER-A42L-06 19 54803031 54803031 C T LILRA3 Missense_Mutation p.G216R 0.14 deleterious(0.01) benign(0.002) TCGA-ER-A42L-06 19 55085366 55085366 C T LILRA2 Silent p.V7V 0.09 TCGA-ER-A42L-06 19 55086396 55086396 C T LILRA2 Missense_Mutation p.P184L 0.10 deleterious(0.03) probably_damaging(1) TCGA-ER-A42L-06 19 55284956 55284956 C T KIR2DL1 Missense_Mutation p.S81F 0.06 tolerated(0.29) probably_damaging(0.999) TCGA-ER-A42L-06 19 55284957 55284957 C T KIR2DL1 Silent p.S81S 0.06 TCGA-ER-A42L-06 19 55286852 55286852 C T KIR2DL1 Silent p.F202F 0.09 TCGA-ER-A42L-06 19 55331425 55331425 C T KIR3DL1 Nonsense_Mutation p.Q205* 0.05 TCGA-ER-A42L-06 19 55450665 55450665 C T NLRP7 Missense_Mutation p.E508K 0.06 deleterious(0.03) possibly_damaging(0.459) TCGA-ER-A42L-06 19 55451281 55451281 C T NLRP7 Silent p.R302R 0.08 TCGA-ER-A42L-06 19 56220251 56220251 G A NLRP9 3'UTR 0.08 TCGA-ER-A42L-06 19 56321673 56321673 C T NLRP11 Silent p.R101R 0.07 TCGA-ER-A42L-06 19 56370573 56370573 C T NLRP4 Missense_Mutation p.S605F 0.10 deleterious(0) probably_damaging(0.957) TCGA-ER-A42L-06 19 56467306 56467306 G A NLRP8 Missense_Mutation p.D628N 0.06 tolerated(1) benign(0.001) TCGA-ER-A42L-06 19 56499274 56499274 C T NLRP8 Missense_Mutation p.P1048S 0.12 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-ER-A42L-06 19 56539030 56539030 C T NLRP5 Silent p.I477I 0.18 TCGA-ER-A42L-06 19 56733256 56733256 G A ZSCAN5A Silent p.F393F 0.09 TCGA-ER-A42L-06 19 57326874 57326874 G A PEG3 Missense_Mutation p.A979V 0.07 tolerated(0.54) benign(0.074) TCGA-ER-A42L-06 19 57646713 57646713 C T ZIM3 Missense_Mutation p.G331E 0.07 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 19 5778504 5778504 G A CATSPERD Nonsense_Mutation p.W738* 0.16 TCGA-ER-A42L-06 19 58290786 58290786 C T ZNF586 Silent p.L277L 0.09 TCGA-ER-A42L-06 19 58579076 58579076 G A ZNF135 Silent p.K432K 0.08 TCGA-ER-A42L-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.16 deleterious(0) possibly_damaging(0.891) TCGA-ER-A42L-06 19 6665054 6665054 G A TNFSF14 Silent p.F202F 0.17 TCGA-ER-A42L-06 19 7083327 7083327 G A ZNF557 Missense_Mutation p.E289K 0.06 deleterious(0.03) possibly_damaging(0.765) TCGA-ER-A42L-06 19 7083460 7083460 C T ZNF557 Missense_Mutation p.S333L 0.12 tolerated(0.12) possibly_damaging(0.776) TCGA-ER-A42L-06 19 7830657 7830657 G A CLEC4M Silent p.L116L 0.15 TCGA-ER-A42L-06 19 8841699 8841699 C T OR2Z1 Silent p.F103F 0.13 TCGA-ER-A42L-06 19 8953342 8953342 G A MBD3L1 5'UTR 0.10 TCGA-ER-A42L-06 19 9014191 9014191 C T MUC16 Silent p.Q12819Q 0.21 TCGA-ER-A42L-06 19 9058180 9058180 G A MUC16 Missense_Mutation p.P9756S 0.08 unknown(0) TCGA-ER-A42L-06 19 9059574 9059574 A C MUC16 Missense_Mutation p.M9291R 0.07 unknown(0) TCGA-ER-A42L-06 19 9060272 9060272 G A MUC16 Silent p.S9058S 0.13 TCGA-ER-A42L-06 19 9064480 9064480 C T MUC16 Missense_Mutation p.G7656R 0.20 unknown(0) TCGA-ER-A42L-06 19 9070016 9070016 A G MUC16 Silent p.T5810T 0.05 TCGA-ER-A42L-06 19 9070017 9070017 G T MUC16 Missense_Mutation p.T5810N 0.05 unknown(0) TCGA-ER-A42L-06 19 9213113 9213113 C T OR7G2 Silent p.R290R 0.10 TCGA-ER-A42L-06 19 9296799 9296799 C T OR7D2 Silent p.L114L 0.11 TCGA-ER-A42L-06 19 9452969 9452969 C T ZNF559 Missense_Mutation p.S281F 0.09 tolerated(0.21) benign(0) TCGA-ER-A42L-06 1 100387261 100387261 C T AGL 3'UTR 0.13 TCGA-ER-A42L-06 1 101456040 101456040 G A DPH5 Missense_Mutation p.P261L 0.06 tolerated(0.14) probably_damaging(0.932) TCGA-ER-A42L-06 1 10364514 10364514 C T KIF1B Intron 0.06 TCGA-ER-A42L-06 1 104163236 104163236 G A AMY2A Missense_Mutation p.E270K 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 1 11077051 11077051 T C TARDBP Missense_Mutation p.V130A 0.12 deleterious(0.04) benign(0.208) TCGA-ER-A42L-06 1 11174405 11174405 C T MTOR Missense_Mutation p.D2424N 0.07 deleterious(0) possibly_damaging(0.526) TCGA-ER-A42L-06 1 111957472 111957472 G A OVGP1 Missense_Mutation p.H551Y 0.05 tolerated_low_confidence(0.18) benign(0.008) TCGA-ER-A42L-06 1 112524827 112524827 C T KCND3 Silent p.E174E 0.10 TCGA-ER-A42L-06 1 113657299 113657299 C T LRIG2 Silent p.G777G 0.07 TCGA-ER-A42L-06 1 113657300 113657300 C T LRIG2 Missense_Mutation p.H778Y 0.07 tolerated(0.08) benign(0.246) TCGA-ER-A42L-06 1 115147572 115147572 C T DENND2C Silent p.K546K 0.11 TCGA-ER-A42L-06 1 11596589 11596589 G A PTCHD2 Missense_Mutation p.G1342D 0.13 deleterious(0.04) possibly_damaging(0.795) TCGA-ER-A42L-06 1 117297357 117297357 G A CD2 Missense_Mutation p.D56N 0.09 tolerated(0.09) probably_damaging(0.984) TCGA-ER-A42L-06 1 118539274 118539274 G A SPAG17 Silent p.S1623S 0.14 TCGA-ER-A42L-06 1 120263824 120263824 C T PHGDH Missense_Mutation p.T57I 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-ER-A42L-06 1 12082292 12082292 T G MIIP Silent p.R85R 0.10 TCGA-ER-A42L-06 1 12476719 12476719 C T VPS13D Missense_Mutation p.L4058F 0.08 probably_damaging(0.994) TCGA-ER-A42L-06 1 12854214 12854214 C T PRAMEF1 Silent p.P146P 0.05 TCGA-ER-A42L-06 1 12887176 12887176 C T PRAMEF11 Silent p.L227L 0.05 TCGA-ER-A42L-06 1 12887496 12887496 C T PRAMEF11 Missense_Mutation p.D121N 0.06 deleterious(0.04) possibly_damaging(0.448) TCGA-ER-A42L-06 1 12887588 12887588 C T PRAMEF11 Missense_Mutation p.R90K 0.07 tolerated(0.86) benign(0.117) TCGA-ER-A42L-06 1 149906415 149906415 G A MTMR11 Missense_Mutation p.T158I 0.28 deleterious(0.01) benign(0.358) TCGA-ER-A42L-06 1 150325390 150325390 A G PRPF3 Missense_Mutation p.K663E 0.18 deleterious(0) probably_damaging(0.994) TCGA-ER-A42L-06 1 152277232 152277232 C T FLG Missense_Mutation p.G3377E 0.04 unknown(0) TCGA-ER-A42L-06 1 152331258 152331258 C T FLG2 Missense_Mutation p.E35K 0.05 unknown(0) TCGA-ER-A42L-06 1 152944660 152944660 C T SPRR4 3'UTR 0.25 TCGA-ER-A42L-06 1 153963240 153963240 T A RPS27 5'UTR 0.14 TCGA-ER-A42L-06 1 154918536 154918536 C T PBXIP1 Silent p.P538P 0.05 TCGA-ER-A42L-06 1 156669807 156669807 C A CRABP2 3'UTR 0.20 TCGA-ER-A42L-06 1 157509140 157509140 G A FCRL5 Missense_Mutation p.P380S 0.16 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 1 158224935 158224935 G A CD1A Nonsense_Mutation p.W40* 0.18 TCGA-ER-A42L-06 1 158390615 158390615 G A OR10K2 Silent p.F14F 0.22 TCGA-ER-A42L-06 1 158449913 158449913 C T OR10R2 Silent p.F82F 0.04 TCGA-ER-A42L-06 1 158549606 158549606 G A OR10X1 Silent p.F28F 0.24 TCGA-ER-A42L-06 1 158624435 158624435 C T SPTA1 Missense_Mutation p.G1001D 0.11 tolerated(0.27) benign(0.004) TCGA-ER-A42L-06 1 160100050 160100050 G A ATP1A2 Missense_Mutation p.M540I 0.20 tolerated(0.12) benign(0.002) TCGA-ER-A42L-06 1 161018393 161018393 C T ARHGAP30 Silent p.G806G 0.17 TCGA-ER-A42L-06 1 162381743 162381743 C T SH2D1B Missense_Mutation p.E22K 0.19 tolerated(1) benign(0.071) TCGA-ER-A42L-06 1 16332590 16332590 G A C1orf64 Missense_Mutation p.E87K 0.11 tolerated(0.25) possibly_damaging(0.466) TCGA-ER-A42L-06 1 16558515 16558515 G A RSG1 3'UTR 0.07 TCGA-ER-A42L-06 1 167097704 167097704 T A DUSP27 Missense_Mutation p.F1112L 0.16 deleterious(0.01) probably_damaging(0.91) TCGA-ER-A42L-06 1 167404515 167404515 C T CD247 Intron 0.14 TCGA-ER-A42L-06 1 169511203 169511203 G A F5 Missense_Mutation p.P1042L 0.04 tolerated(0.15) benign(0.027) TCGA-ER-A42L-06 1 171121294 171121294 C T FMO6P Missense_Mutation p.P358L 0.21 deleterious(0.05) benign(0.443) TCGA-ER-A42L-06 1 171486925 171486925 C T PRRC2C Missense_Mutation p.S239F 0.11 unknown(0) TCGA-ER-A42L-06 1 171486926 171486926 C T PRRC2C Silent p.S239S 0.12 TCGA-ER-A42L-06 1 173157699 173157699 G A TNFSF4 Missense_Mutation p.R55W 0.19 deleterious(0) benign(0.232) TCGA-ER-A42L-06 1 175375910 175375910 G A TNR 5'UTR 0.06 TCGA-ER-A42L-06 1 175957507 175957507 G A RFWD2 Missense_Mutation p.P630L 0.23 deleterious(0.02) benign(0.186) TCGA-ER-A42L-06 1 176659413 176659413 G A PAPPA2 Missense_Mutation p.E760K 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 1 17672605 17672605 G A PADI4 Missense_Mutation p.E340K 0.11 tolerated(0.39) benign(0.093) TCGA-ER-A42L-06 1 17748706 17748706 G A RCC2 Missense_Mutation p.P246L 0.13 deleterious(0.02) benign(0.103) TCGA-ER-A42L-06 1 178490357 178490357 G A TEX35 Missense_Mutation p.E182K 0.11 deleterious_low_confidence(0.01) benign(0.05) TCGA-ER-A42L-06 1 178834185 178834185 G T ANGPTL1 Missense_Mutation p.P243T 0.21 tolerated(0.47) benign(0.005) TCGA-ER-A42L-06 1 179620142 179620142 C T TDRD5 Silent p.F647F 0.10 TCGA-ER-A42L-06 1 179638385 179638385 C T TDRD5 Silent p.F902F 0.07 TCGA-ER-A42L-06 1 182874688 182874688 G A SHCBP1L Missense_Mutation p.P427S 0.17 deleterious(0.02) probably_damaging(1) TCGA-ER-A42L-06 1 184765085 184765085 G A FAM129A Silent p.L605L 0.23 TCGA-ER-A42L-06 1 18809632 18809632 C T KLHDC7A Silent p.A719A 0.11 TCGA-ER-A42L-06 1 190067113 190067113 C T BRINP3 3'UTR 0.20 TCGA-ER-A42L-06 1 190067564 190067564 G A BRINP3 Silent p.L629L 0.19 TCGA-ER-A42L-06 1 197297888 197297888 G A CRB1 Missense_Mutation p.C136Y 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-ER-A42L-06 1 197313597 197313597 G A CRB1 Missense_Mutation p.G280E 0.05 tolerated(0.34) benign(0.011) TCGA-ER-A42L-06 1 198721842 198721842 G A PTPRC Silent p.Q1150Q 0.07 TCGA-ER-A42L-06 1 198725108 198725108 A G PTPRC Missense_Mutation p.N1240S 0.24 tolerated(1) benign(0.001) TCGA-ER-A42L-06 1 200867506 200867506 C T C1orf106 5'UTR 0.23 TCGA-ER-A42L-06 1 20097937 20097937 C A TMCO4 Missense_Mutation p.W73L 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-ER-A42L-06 1 202288019 202288019 C T LGR6 Missense_Mutation p.S863F 0.24 deleterious(0) probably_damaging(0.982) TCGA-ER-A42L-06 1 204129793 204129793 G A REN Silent p.L129L 0.13 TCGA-ER-A42L-06 1 205273504 205273504 C A NUAK2 Missense_Mutation p.G321W 0.09 deleterious(0.03) probably_damaging(0.983) TCGA-ER-A42L-06 1 207139168 207139168 G A FCAMR Missense_Mutation p.P69S 0.17 tolerated(0.16) benign(0.001) TCGA-ER-A42L-06 1 207646948 207646948 C T CR2 Silent p.F679F 0.05 TCGA-ER-A42L-06 1 209811883 209811883 C T LAMB3 Silent p.Q98Q 0.15 TCGA-ER-A42L-06 1 211545936 211545936 C T TRAF5 Silent p.P522P 0.20 TCGA-ER-A42L-06 1 211545937 211545937 C T TRAF5 Missense_Mutation p.R523C 0.20 tolerated(0.08) benign(0.26) TCGA-ER-A42L-06 1 214178552 214178552 C T PROX1 Silent p.L590L 0.26 TCGA-ER-A42L-06 1 21804631 21804631 C T NBPF3 Intron 0.05 TCGA-ER-A42L-06 1 218607692 218607692 G A TGFB2 Missense_Mutation p.G247E 0.14 deleterious(0) probably_damaging(0.976) TCGA-ER-A42L-06 1 223567855 223567855 G A C1orf65 Nonsense_Mutation p.W346* 0.25 TCGA-ER-A42L-06 1 228873460 228873460 C T RHOU Silent p.L101L 0.13 TCGA-ER-A42L-06 1 234458812 234458812 C T SLC35F3 Silent p.I432I 0.18 TCGA-ER-A42L-06 1 236577593 236577593 C T EDARADD Missense_Mutation p.P52S 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-ER-A42L-06 1 236738076 236738076 G A HEATR1 Missense_Mutation p.S1071L 0.21 deleterious(0.01) possibly_damaging(0.824) TCGA-ER-A42L-06 1 236914838 236914838 C T ACTN2 Silent p.I575I 0.23 TCGA-ER-A42L-06 1 240072077 240072077 C G CHRM3 Missense_Mutation p.D442E 0.22 tolerated(0.91) benign(0.003) TCGA-ER-A42L-06 1 241761112 241761112 G A OPN3 Missense_Mutation p.S294L 0.05 deleterious(0.02) benign(0.23) TCGA-ER-A42L-06 1 24394474 24394474 C T MYOM3 Nonsense_Mutation p.W1114* 0.10 TCGA-ER-A42L-06 1 247587769 247587769 C T NLRP3 Missense_Mutation p.P342S 0.19 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 1 247655309 247655309 G A OR2W5 RNA 0.12 TCGA-ER-A42L-06 1 248004482 248004482 G A OR11L1 Silent p.S239S 0.24 TCGA-ER-A42L-06 1 248039441 248039441 G A TRIM58 Missense_Mutation p.G371R 0.18 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 1 248308504 248308504 A G OR2M5 Missense_Mutation p.N19D 0.04 tolerated(0.67) benign(0.001) TCGA-ER-A42L-06 1 248685005 248685005 C T OR2G6 Nonsense_Mutation p.Q20* 0.23 TCGA-ER-A42L-06 1 24921918 24921918 C T NCMAP 5'UTR 0.10 TCGA-ER-A42L-06 1 24932260 24932260 C T NCMAP 3'UTR 0.10 TCGA-ER-A42L-06 1 25784985 25784985 C T TMEM57 Silent p.Y252Y 0.09 TCGA-ER-A42L-06 1 26510622 26510622 C T CNKSR1 Silent p.L306L 0.11 TCGA-ER-A42L-06 1 26516213 26516213 C T CNKSR1 3'UTR 0.32 TCGA-ER-A42L-06 1 27272685 27272685 C T NUDC 3'UTR 0.14 TCGA-ER-A42L-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.16 TCGA-ER-A42L-06 1 32156802 32156802 G A COL16A1 Missense_Mutation p.P475L 0.11 unknown(0) TCGA-ER-A42L-06 1 32688147 32688147 C T EIF3I Silent p.I4I 0.09 TCGA-ER-A42L-06 1 33292228 33292228 C T S100PBP Silent p.S176S 0.07 TCGA-ER-A42L-06 1 35333222 35333222 T C DLGAP3 Missense_Mutation p.E831G 0.06 tolerated(1) probably_damaging(0.995) TCGA-ER-A42L-06 1 36215302 36215302 G A CLSPN Silent p.L713L 0.12 TCGA-ER-A42L-06 1 36786005 36786005 C T SH3D21 Missense_Mutation p.P581S 0.10 tolerated(0.17) benign(0.009) TCGA-ER-A42L-06 1 39798746 39798746 T C MACF1 Intron 0.07 TCGA-ER-A42L-06 1 40315824 40315824 G A TRIT1 Missense_Mutation p.P224S 0.11 tolerated(0.52) benign(0.01) TCGA-ER-A42L-06 1 42041223 42041223 G A HIVEP3 Silent p.F1733F 0.09 TCGA-ER-A42L-06 1 42045906 42045906 G A HIVEP3 Silent p.S1521S 0.07 TCGA-ER-A42L-06 1 43818270 43818270 C T MPL Missense_Mutation p.P579S 0.08 tolerated(0.4) benign(0.042) TCGA-ER-A42L-06 1 46976324 46976324 C T DMBX1 Nonsense_Mutation p.Q111* 0.11 TCGA-ER-A42L-06 1 48690437 48690437 C T SLC5A9 Silent p.F68F 0.10 TCGA-ER-A42L-06 1 54272139 54272139 G A NDC1 Missense_Mutation p.L315F 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 1 54272140 54272140 G A NDC1 Silent p.C314C 0.08 TCGA-ER-A42L-06 1 55472814 55472814 G A BSND Silent p.P139P 0.10 TCGA-ER-A42L-06 1 55523103 55523103 G A PCSK9 Missense_Mutation p.E366K 0.06 tolerated(0.12) benign(0.035) TCGA-ER-A42L-06 1 59004619 59004619 G A OMA1 Silent p.V116V 0.09 TCGA-ER-A42L-06 1 67561094 67561094 G A C1orf141 Missense_Mutation p.P143S 0.20 tolerated(0.12) benign(0) TCGA-ER-A42L-06 1 75037393 75037393 C T C1orf173 Missense_Mutation p.G1334E 0.10 tolerated(0.28) benign(0.025) TCGA-ER-A42L-06 1 75038302 75038302 C T C1orf173 Missense_Mutation p.G1031E 0.10 tolerated(0.06) benign(0.083) TCGA-ER-A42L-06 1 75188920 75188920 G A CRYZ Missense_Mutation p.P49L 0.07 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 1 76343955 76343955 C T MSH4 Missense_Mutation p.L498F 0.10 deleterious(0) probably_damaging(0.992) TCGA-ER-A42L-06 1 82450956 82450956 G A LPHN2 Missense_Mutation p.R1125K 0.10 deleterious(0.04) possibly_damaging(0.607) TCGA-ER-A42L-06 1 89583323 89583323 C T GBP2 Missense_Mutation p.E188K 0.13 tolerated(0.66) benign(0.008) TCGA-ER-A42L-06 1 9164481 9164481 G A GPR157 Silent p.T335T 0.08 TCGA-ER-A42L-06 1 94697173 94697173 C T ARHGAP29 5'UTR 0.16 TCGA-ER-A42L-06 1 95303403 95303403 C T SLC44A3 Missense_Mutation p.L216F 0.10 tolerated(0.1) benign(0.111) TCGA-ER-A42L-06 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.13 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 20 1532542 1532542 C T SIRPD Silent p.R72R 0.08 TCGA-ER-A42L-06 20 207945 207945 C T DEFB129 Missense_Mutation p.P6S 0.12 deleterious(0.01) possibly_damaging(0.857) TCGA-ER-A42L-06 20 23066214 23066214 G A CD93 Nonsense_Mutation p.Q206* 0.07 TCGA-ER-A42L-06 20 25269070 25269070 G A PYGB Missense_Mutation p.R593K 0.09 tolerated(1) benign(0.001) TCGA-ER-A42L-06 20 2843503 2843503 C T VPS16 Silent p.F418F 0.11 TCGA-ER-A42L-06 20 3065270 3065270 G A AVP Silent p.S17S 0.07 TCGA-ER-A42L-06 20 3065271 3065271 G A AVP Missense_Mutation p.S17F 0.07 deleterious(0.01) possibly_damaging(0.602) TCGA-ER-A42L-06 20 30919055 30919055 C T KIF3B Missense_Mutation p.S726F 0.11 deleterious(0.05) possibly_damaging(0.485) TCGA-ER-A42L-06 20 3324333 3324333 T G C20orf194 Missense_Mutation p.T279P 0.07 tolerated(0.09) possibly_damaging(0.809) TCGA-ER-A42L-06 20 34556679 34556679 G A CNBD2 5'UTR 0.21 TCGA-ER-A42L-06 20 35269699 35269699 G A SLA2 Missense_Mutation p.P14S 0.05 tolerated(0.23) unknown(0) TCGA-ER-A42L-06 20 39974472 39974472 C T LPIN3 Missense_Mutation p.T10M 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A42L-06 20 40733281 40733281 G A PTPRT Silent p.F1156F 0.08 TCGA-ER-A42L-06 20 40735440 40735440 G A PTPRT Silent p.L1126L 0.07 TCGA-ER-A42L-06 20 40735547 40735547 C T PTPRT Missense_Mutation p.R1090Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 20 40739128 40739128 C T PTPRT Splice_Site p.X1034_splice 0.11 TCGA-ER-A42L-06 20 40790000 40790000 C T PTPRT Missense_Mutation p.E892K 0.07 deleterious(0.01) benign(0.019) TCGA-ER-A42L-06 20 42198129 42198129 C T SGK2 Silent p.F171F 0.24 TCGA-ER-A42L-06 20 42204953 42204953 C T SGK2 Silent p.A321A 0.05 TCGA-ER-A42L-06 20 45017819 45017819 G A ELMO2 Missense_Mutation p.S95F 0.12 deleterious(0.01) benign(0.128) TCGA-ER-A42L-06 20 47991229 47991229 G A KCNB1 Nonsense_Mutation p.Q290* 0.06 TCGA-ER-A42L-06 20 48160850 48160850 G A PTGIS Silent p.F171F 0.13 TCGA-ER-A42L-06 20 49225893 49225893 C T FAM65C Missense_Mutation p.D189N 0.09 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 20 49576504 49576504 G A MOCS3 Silent p.L375L 0.08 TCGA-ER-A42L-06 20 51872133 51872133 C T TSHZ2 Silent p.P712P 0.06 TCGA-ER-A42L-06 20 55027271 55027271 C T CASS4 Missense_Mutation p.P347S 0.13 deleterious(0.03) possibly_damaging(0.638) TCGA-ER-A42L-06 20 55211768 55211768 G A TFAP2C Missense_Mutation p.R342Q 0.14 tolerated(0.15) probably_damaging(0.955) TCGA-ER-A42L-06 20 55213077 55213077 A G TFAP2C 3'UTR 0.12 TCGA-ER-A42L-06 20 61511130 61511130 C T DIDO1 Missense_Mutation p.E2060K 0.07 probably_damaging(0.991) TCGA-ER-A42L-06 20 61528239 61528239 G A DIDO1 Silent p.L566L 0.09 TCGA-ER-A42L-06 20 62320405 62320405 C T RTEL1 Intron 0.09 TCGA-ER-A42L-06 20 744463 744463 G A SLC52A3 Missense_Mutation p.S251F 0.10 deleterious(0.01) benign(0.105) TCGA-ER-A42L-06 20 9520177 9520177 G A PAK7 Missense_Mutation p.P698S 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-ER-A42L-06 21 27840826 27840826 C T CYYR1 Silent p.R153R 0.20 TCGA-ER-A42L-06 21 28296915 28296915 C T ADAMTS5 Silent p.R750R 0.16 TCGA-ER-A42L-06 21 31045329 31045329 C T GRIK1 Missense_Mutation p.E234K 0.05 tolerated(0.24) benign(0.121) TCGA-ER-A42L-06 21 31066350 31066350 C A GRIK1 Missense_Mutation p.V51F 0.06 tolerated(0.76) benign(0.082) TCGA-ER-A42L-06 21 37605229 37605229 C T DOPEY2 Silent p.S826S 0.08 TCGA-ER-A42L-06 21 40568855 40568855 G A BRWD1 Missense_Mutation p.S2047F 0.10 tolerated_low_confidence(0.37) possibly_damaging(0.48) TCGA-ER-A42L-06 21 41414346 41414346 C T DSCAM Missense_Mutation p.D1880N 0.10 deleterious(0) probably_damaging(0.99) TCGA-ER-A42L-06 21 41424032 41424032 C T DSCAM Missense_Mutation p.D1680N 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-ER-A42L-06 21 44841227 44841227 A T SIK1 Missense_Mutation p.Y174N 0.07 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 21 46057913 46057913 C T KRTAP10-10 Silent p.L193L 0.10 TCGA-ER-A42L-06 22 18064150 18064150 G A SLC25A18 Missense_Mutation p.R57Q 0.07 deleterious(0.05) benign(0.146) TCGA-ER-A42L-06 22 21334404 21334404 G A AIFM3 Missense_Mutation p.R583Q 0.11 tolerated(0.31) possibly_damaging(0.768) TCGA-ER-A42L-06 22 23040803 23040803 C T IGLV2-23 Missense_Mutation p.S84F 0.10 deleterious_low_confidence(0) benign(0.414) TCGA-ER-A42L-06 22 23040804 23040804 T G IGLV2-23 Silent p.S84S 0.09 TCGA-ER-A42L-06 22 24494038 24494038 G A CABIN1 Missense_Mutation p.G1334R 0.08 deleterious(0.02) probably_damaging(0.938) TCGA-ER-A42L-06 22 24494039 24494039 G A CABIN1 Missense_Mutation p.G1334E 0.08 deleterious(0.03) probably_damaging(0.913) TCGA-ER-A42L-06 22 29759031 29759031 C T AP1B1 Silent p.V34V 0.04 TCGA-ER-A42L-06 22 30776101 30776101 G A RNF215 Missense_Mutation p.P320S 0.08 tolerated(0.07) benign(0.445) TCGA-ER-A42L-06 22 30950970 30950970 C T GAL3ST1 Nonsense_Mutation p.W414* 0.11 TCGA-ER-A42L-06 22 31524262 31524262 C T INPP5J Silent p.F286F 0.15 TCGA-ER-A42L-06 22 32754281 32754281 G A RFPL3 Missense_Mutation p.D75N 0.11 deleterious(0.04) benign(0.239) TCGA-ER-A42L-06 22 37769187 37769187 G A ELFN2 Silent p.V796V 0.07 TCGA-ER-A42L-06 22 38121882 38121882 C T TRIOBP Nonsense_Mutation p.Q1107* 0.11 TCGA-ER-A42L-06 22 38823733 38823733 G A KCNJ4 Silent p.I135I 0.13 TCGA-ER-A42L-06 22 39135880 39135880 G A SUN2 Silent p.L496L 0.05 TCGA-ER-A42L-06 22 40574087 40574087 C T TNRC6B 5'UTR 0.12 TCGA-ER-A42L-06 22 40711415 40711415 C T TNRC6B Missense_Mutation p.P1603S 0.11 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 22 41574339 41574339 T A EP300 Missense_Mutation p.H2208Q 0.08 benign(0.264) TCGA-ER-A42L-06 22 50563934 50563934 G A MOV10L1 Silent p.R561R 0.06 TCGA-ER-A42L-06 2 10008442 10008442 G C TAF1B Missense_Mutation p.S146T 0.13 tolerated(0.08) possibly_damaging(0.823) TCGA-ER-A42L-06 2 106690491 106690491 G A C2orf40 Missense_Mutation p.D93N 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-ER-A42L-06 2 107040781 107040781 T G RGPD3 Silent p.T1214T 0.17 TCGA-ER-A42L-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.05 tolerated(0.11) benign(0.012) TCGA-ER-A42L-06 2 108488582 108488582 G A RGPD4 Nonsense_Mutation p.W1374* 0.06 TCGA-ER-A42L-06 2 108489125 108489125 A T RGPD4 Silent p.S1555S 0.10 TCGA-ER-A42L-06 2 113587992 113587992 C T IL1B Silent p.G252G 0.16 TCGA-ER-A42L-06 2 113832328 113832328 C T IL1F10 Silent p.G49G 0.12 TCGA-ER-A42L-06 2 116593799 116593799 G A DPP10 Missense_Mutation p.V677M 0.20 deleterious(0) benign(0.065) TCGA-ER-A42L-06 2 120195148 120195148 C T TMEM37 3'UTR 0.21 TCGA-ER-A42L-06 2 120438440 120438440 C T TMEM177 Missense_Mutation p.P4L 0.10 tolerated(0.37) benign(0.037) TCGA-ER-A42L-06 2 12880729 12880729 G T TRIB2 Missense_Mutation p.A281S 0.10 deleterious(0.01) possibly_damaging(0.872) TCGA-ER-A42L-06 2 130831628 130831628 G A POTEF 3'UTR 0.14 TCGA-ER-A42L-06 2 133539545 133539545 C T NCKAP5 Silent p.T1613T 0.15 TCGA-ER-A42L-06 2 135745407 135745407 C T MAP3K19 Silent p.R345R 0.06 TCGA-ER-A42L-06 2 138163226 138163226 G A THSD7B Missense_Mutation p.M848I 0.11 tolerated(0.44) benign(0.043) TCGA-ER-A42L-06 2 141250219 141250219 C T LRP1B Silent p.R3026R 0.15 TCGA-ER-A42L-06 2 143790872 143790872 C T KYNU Silent p.S341S 0.13 TCGA-ER-A42L-06 2 14775028 14775028 C T FAM84A 3'UTR 0.19 TCGA-ER-A42L-06 2 149226716 149226716 C T MBD5 Missense_Mutation p.P402S 0.17 deleterious(0) possibly_damaging(0.803) TCGA-ER-A42L-06 2 149227553 149227553 C T MBD5 Missense_Mutation p.P681S 0.12 tolerated(0.65) possibly_damaging(0.803) TCGA-ER-A42L-06 2 150071399 150071399 G A LYPD6B 3'UTR 0.24 TCGA-ER-A42L-06 2 1507825 1507825 T A TPO Nonsense_Mutation p.L831* 0.06 TCGA-ER-A42L-06 2 152466568 152466568 C T NEB Missense_Mutation p.D4029N 0.17 probably_damaging(1) TCGA-ER-A42L-06 2 152550864 152550864 G A NEB Silent p.S623S 0.06 TCGA-ER-A42L-06 2 152989930 152989930 C T STAM2 Missense_Mutation p.V290I 0.12 tolerated(0.07) benign(0.029) TCGA-ER-A42L-06 2 158182193 158182193 G A ERMN Intron 0.10 TCGA-ER-A42L-06 2 158400981 158400981 G A ACVR1C Missense_Mutation p.H307Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-ER-A42L-06 2 163133442 163133442 A G IFIH1 Silent p.L687L 0.07 TCGA-ER-A42L-06 2 163693078 163693078 C T KCNH7 Silent p.R92R 0.15 TCGA-ER-A42L-06 2 1653130 1653130 C T PXDN Missense_Mutation p.V808I 0.08 tolerated(0.97) benign(0.005) TCGA-ER-A42L-06 2 165578736 165578736 G A COBLL1 Missense_Mutation p.S282F 0.10 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 2 166170429 166170429 G A SCN2A Silent p.G398G 0.14 TCGA-ER-A42L-06 2 167263132 167263132 C T SCN7A Missense_Mutation p.G1336E 0.06 tolerated(1) benign(0.076) TCGA-ER-A42L-06 2 16746976 16746976 C T FAM49A Missense_Mutation p.D44N 0.20 tolerated(0.26) benign(0.052) TCGA-ER-A42L-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.13 probably_damaging(0.999) TCGA-ER-A42L-06 2 168101495 168101495 C T XIRP2 Missense_Mutation p.S1198F 0.09 probably_damaging(0.978) TCGA-ER-A42L-06 2 168106756 168106756 G A XIRP2 Missense_Mutation p.E2952K 0.21 probably_damaging(0.999) TCGA-ER-A42L-06 2 168108266 168108266 C T XIRP2 Missense_Mutation p.P3455L 0.17 probably_damaging(1) TCGA-ER-A42L-06 2 169783724 169783724 C T ABCB11 Missense_Mutation p.R1187K 0.07 tolerated(0.1) benign(0.002) TCGA-ER-A42L-06 2 170002370 170002370 C T LRP2 Missense_Mutation p.G4292E 0.13 probably_damaging(1) TCGA-ER-A42L-06 2 179425664 179425664 C T TTN Missense_Mutation p.E28399K 0.07 TCGA-ER-A42L-06 2 179429054 179429054 C T TTN Missense_Mutation p.E27269K 0.20 TCGA-ER-A42L-06 2 179433317 179433317 C T TTN Missense_Mutation p.D25848N 0.16 TCGA-ER-A42L-06 2 179436049 179436049 C T TTN Missense_Mutation p.G24937E 0.18 TCGA-ER-A42L-06 2 179444336 179444336 C T TTN Missense_Mutation p.G22530R 0.16 TCGA-ER-A42L-06 2 179454410 179454410 C T TTN Missense_Mutation p.G20681E 0.16 TCGA-ER-A42L-06 2 179472717 179472717 C T TTN Silent p.G17599G 0.13 TCGA-ER-A42L-06 2 179474630 179474630 C T TTN Missense_Mutation p.D17174N 0.08 TCGA-ER-A42L-06 2 179477270 179477270 A G TTN Missense_Mutation p.I16661T 0.09 TCGA-ER-A42L-06 2 179542388 179542388 G A TTN Silent p.V11417V 0.18 TCGA-ER-A42L-06 2 179542444 179542444 G A TTN Missense_Mutation p.P11399S 0.20 TCGA-ER-A42L-06 2 179577062 179577062 G A TTN Missense_Mutation p.S9196L 0.15 TCGA-ER-A42L-06 2 179595381 179595381 G A TTN Missense_Mutation p.S5960L 0.19 TCGA-ER-A42L-06 2 179602996 179602996 A G TTN Silent p.N4728N 0.24 TCGA-ER-A42L-06 2 179612035 179612035 G A TTN Intron 0.15 TCGA-ER-A42L-06 2 179615431 179615431 C A TTN Intron 0.10 TCGA-ER-A42L-06 2 179638959 179638959 C T TTN Silent p.K2344K 0.09 TCGA-ER-A42L-06 2 179641147 179641147 C T TTN Missense_Mutation p.R1815K 0.11 TCGA-ER-A42L-06 2 179641366 179641366 C T TTN Missense_Mutation p.G1742E 0.17 TCGA-ER-A42L-06 2 179641454 179641454 T C TTN Missense_Mutation p.R1713G 0.21 TCGA-ER-A42L-06 2 179702035 179702035 C T CCDC141 Missense_Mutation p.G1304E 0.12 tolerated(0.15) benign(0.073) TCGA-ER-A42L-06 2 182359479 182359479 T G ITGA4 Missense_Mutation p.L427V 0.06 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 2 185800578 185800578 C T ZNF804A Missense_Mutation p.S152F 0.06 tolerated(0.57) probably_damaging(0.986) TCGA-ER-A42L-06 2 185802581 185802581 C T ZNF804A Missense_Mutation p.H820Y 0.22 deleterious(0.05) benign(0.324) TCGA-ER-A42L-06 2 186669996 186669996 G A FSIP2 Silent p.R5410R 0.05 TCGA-ER-A42L-06 2 189873781 189873781 T A COL3A1 Nonsense_Mutation p.Y1219* 0.06 TCGA-ER-A42L-06 2 190327289 190327289 C T WDR75 Silent p.L286L 0.10 TCGA-ER-A42L-06 2 1926254 1926254 C T MYT1L Silent p.G429G 0.09 TCGA-ER-A42L-06 2 196651833 196651833 C T DNAH7 Silent p.R3593R 0.22 TCGA-ER-A42L-06 2 196791163 196791163 G A DNAH7 Missense_Mutation p.P1200L 0.12 tolerated(0.32) benign(0) TCGA-ER-A42L-06 2 197597334 197597334 C T CCDC150 3'UTR 0.12 TCGA-ER-A42L-06 2 201724939 201724939 C T CLK1 Splice_Site p.X173_splice 0.11 TCGA-ER-A42L-06 2 203383585 203383585 C T BMPR2 Missense_Mutation p.S221F 0.06 tolerated(0.05) possibly_damaging(0.656) TCGA-ER-A42L-06 2 207615732 207615732 C G MDH1B Missense_Mutation p.R326S 0.08 deleterious(0) benign(0.297) TCGA-ER-A42L-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-ER-A42L-06 2 210559669 210559669 C T MAP2 Silent p.V925V 0.21 TCGA-ER-A42L-06 2 212252695 212252695 G A ERBB4 Missense_Mutation p.P1053L 0.09 tolerated(0.26) benign(0.002) TCGA-ER-A42L-06 2 215275070 215275070 C T SPAG16 3'UTR 0.24 TCGA-ER-A42L-06 2 215919341 215919341 G A ABCA12 Missense_Mutation p.S122L 0.14 deleterious(0.02) possibly_damaging(0.511) TCGA-ER-A42L-06 2 215919360 215919360 C T ABCA12 Missense_Mutation p.D116N 0.07 tolerated(0.43) benign(0.001) TCGA-ER-A42L-06 2 215919361 215919361 C T ABCA12 Silent p.L115L 0.08 TCGA-ER-A42L-06 2 216288194 216288194 G A FN1 Silent p.F424F 0.07 TCGA-ER-A42L-06 2 217124017 217124017 C T MARCH4 3'UTR 0.05 TCGA-ER-A42L-06 2 219131647 219131647 C G AAMP Missense_Mutation p.D153H 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 2 220098053 220098053 G A ANKZF1 Silent p.R239R 0.08 TCGA-ER-A42L-06 2 222428816 222428816 C T EPHA4 Missense_Mutation p.S153N 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-ER-A42L-06 2 227945211 227945211 C T COL4A4 Missense_Mutation p.G584E 0.16 probably_damaging(0.972) TCGA-ER-A42L-06 2 228148965 228148965 A G COL4A3 Missense_Mutation p.T929A 0.16 unknown(0) TCGA-ER-A42L-06 2 228881311 228881311 G A SPHKAP Missense_Mutation p.S1420L 0.10 tolerated(0.14) benign(0.013) TCGA-ER-A42L-06 2 234545667 234545667 G A UGT1A10 Missense_Mutation p.V167I 0.16 tolerated(0.07) benign(0.042) TCGA-ER-A42L-06 2 234581109 234581109 C T UGT1A9 Missense_Mutation p.L177F 0.05 tolerated(0.11) benign(0.139) TCGA-ER-A42L-06 2 234858708 234858708 C T TRPM8 Missense_Mutation p.A353V 0.13 tolerated(0.14) benign(0) TCGA-ER-A42L-06 2 238277271 238277271 G A COL6A3 Missense_Mutation p.S1612L 0.12 possibly_damaging(0.657) TCGA-ER-A42L-06 2 241676513 241676513 G A KIF1A Missense_Mutation p.S1325F 0.08 deleterious(0) probably_damaging(0.983) TCGA-ER-A42L-06 2 241705143 241705143 G A KIF1A Silent p.P584P 0.15 TCGA-ER-A42L-06 2 242039037 242039037 G A MTERFD2 Silent p.S98S 0.14 TCGA-ER-A42L-06 2 242047622 242047622 G C PASK Silent p.T1216T 0.15 TCGA-ER-A42L-06 2 26533598 26533598 C T GPR113 Missense_Mutation p.V1000I 0.25 tolerated(0.15) benign(0.039) TCGA-ER-A42L-06 2 27551026 27551026 G A GTF3C2 Nonsense_Mutation p.Q763* 0.09 TCGA-ER-A42L-06 2 27566005 27566005 G A GTF3C2 Missense_Mutation p.S86L 0.18 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-ER-A42L-06 2 27731106 27731106 G A GCKR Silent p.G470G 0.11 TCGA-ER-A42L-06 2 27804870 27804870 G A C2orf16 Missense_Mutation p.E1811K 0.05 tolerated(0.27) unknown(0) TCGA-ER-A42L-06 2 29052048 29052048 G A SPDYA Missense_Mutation p.E139K 0.13 deleterious(0.03) probably_damaging(0.986) TCGA-ER-A42L-06 2 31599958 31599958 G A XDH Missense_Mutation p.T463I 0.05 tolerated(0.05) possibly_damaging(0.512) TCGA-ER-A42L-06 2 31620595 31620595 C T XDH Missense_Mutation p.G145E 0.20 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 2 31754406 31754406 G A AL133247.2 Intron 0.10 TCGA-ER-A42L-06 2 39083584 39083584 G A DHX57 Missense_Mutation p.S536F 0.06 deleterious(0) possibly_damaging(0.895) TCGA-ER-A42L-06 2 50724786 50724786 C T NRXN1 Missense_Mutation p.R895Q 0.11 deleterious(0.01) possibly_damaging(0.482) TCGA-ER-A42L-06 2 50758484 50758484 G A NRXN1 Missense_Mutation p.S783F 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-ER-A42L-06 2 60995610 60995610 C T PAPOLG Silent p.L84L 0.06 TCGA-ER-A42L-06 2 61024234 61024234 C T PAPOLG Missense_Mutation p.P717L 0.12 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ER-A42L-06 2 62728452 62728452 C T TMEM17 Silent p.R163R 0.12 TCGA-ER-A42L-06 2 63349068 63349068 G A WDPCP 3'UTR 0.09 TCGA-ER-A42L-06 2 64863636 64863636 T A SERTAD2 Missense_Mutation p.T124S 0.12 tolerated(0.26) benign(0.015) TCGA-ER-A42L-06 2 68607989 68607989 G A PLEK Silent p.R111R 0.10 TCGA-ER-A42L-06 2 69098524 69098524 G A BMP10 5'UTR 0.12 TCGA-ER-A42L-06 2 70187962 70187962 C T ASPRV1 Missense_Mutation p.D287N 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 2 71357753 71357753 C T MPHOSPH10 5'UTR 0.19 TCGA-ER-A42L-06 2 74751426 74751426 C T DQX1 Nonsense_Mutation p.W147* 0.07 TCGA-ER-A42L-06 2 74777322 74777322 T C LOXL3 Missense_Mutation p.N156S 0.04 tolerated(0.12) possibly_damaging(0.725) TCGA-ER-A42L-06 2 79363156 79363156 G A REG1P RNA 0.26 TCGA-ER-A42L-06 2 86266485 86266485 G A POLR1A Silent p.L1281L 0.05 TCGA-ER-A42L-06 2 87042634 87042634 G A CD8B 3'Flank 0.12 TCGA-ER-A42L-06 2 87085229 87085229 G A CD8B Silent p.I118I 0.09 TCGA-ER-A42L-06 2 89292166 89292166 C T IGKV1-8 Missense_Mutation p.G36E 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-ER-A42L-06 2 89309637 89309637 C G IGKV1-9 Missense_Mutation p.A65P 0.05 tolerated_low_confidence(0.15) benign(0.078) TCGA-ER-A42L-06 2 90044226 90044226 C T IGKV2D-24 Silent p.L49L 0.06 TCGA-ER-A42L-06 2 90108975 90108975 G A IGKV6D-41 Silent p.S80S 0.09 TCGA-ER-A42L-06 2 90212023 90212023 G A IGKV3D-11 Missense_Mutation p.A39T 0.08 deleterious(0.01) possibly_damaging(0.7) TCGA-ER-A42L-06 2 90260159 90260159 G A IGKV1D-8 Missense_Mutation p.G88R 0.16 deleterious(0.04) benign(0.433) TCGA-ER-A42L-06 2 96933387 96933387 G A CIAO1 Missense_Mutation p.E105K 0.14 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 2 97276557 97276557 G A KANSL3 Missense_Mutation p.L409F 0.06 tolerated(0.09) benign(0.366) TCGA-ER-A42L-06 2 99804688 99804688 C T MRPL30 Missense_Mutation p.H34Y 0.14 tolerated(0.27) possibly_damaging(0.703) TCGA-ER-A42L-06 3 100569549 100569549 G A ABI3BP Missense_Mutation p.P419S 0.08 tolerated(0.1) possibly_damaging(0.641) TCGA-ER-A42L-06 3 105290735 105290735 G A ALCAM Missense_Mutation p.M568I 0.14 tolerated(0.51) benign(0) TCGA-ER-A42L-06 3 108163519 108163519 C T MYH15 Missense_Mutation p.E895K 0.17 deleterious(0.01) possibly_damaging(0.51) TCGA-ER-A42L-06 3 108541725 108541725 C T TRAT1 5'UTR 0.07 TCGA-ER-A42L-06 3 10953844 10953844 G A SLC6A11 Missense_Mutation p.G321R 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 3 11068023 11068023 C T SLC6A1 Silent p.S352S 0.20 TCGA-ER-A42L-06 3 119301104 119301104 G T ADPRH Missense_Mutation p.G30W 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 3 120365844 120365844 C T HGD Silent p.Q175Q 0.10 TCGA-ER-A42L-06 3 120876375 120876375 C T STXBP5L Missense_Mutation p.H260Y 0.09 tolerated(0.2) probably_damaging(0.923) TCGA-ER-A42L-06 3 120924788 120924788 G A STXBP5L Missense_Mutation p.G299E 0.10 deleterious(0) probably_damaging(0.99) TCGA-ER-A42L-06 3 121413501 121413501 C T GOLGB1 Missense_Mutation p.E1957K 0.09 probably_damaging(0.954) TCGA-ER-A42L-06 3 121712152 121712152 C T ILDR1 Missense_Mutation p.E482K 0.23 tolerated(0.11) benign(0.108) TCGA-ER-A42L-06 3 121712468 121712468 G A ILDR1 Silent p.F376F 0.06 TCGA-ER-A42L-06 3 122487727 122487727 G A HSPBAP1 Missense_Mutation p.P85S 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-ER-A42L-06 3 123419371 123419371 G A MYLK Missense_Mutation p.R982C 0.10 deleterious(0) benign(0.062) TCGA-ER-A42L-06 3 126207041 126207041 C T UROC1 Nonsense_Mutation p.W657* 0.10 TCGA-ER-A42L-06 3 130285586 130285586 C T COL6A6 Silent p.I441I 0.07 TCGA-ER-A42L-06 3 130889704 130889704 G A NEK11 Missense_Mutation p.D458N 0.14 tolerated(0.15) benign(0.009) TCGA-ER-A42L-06 3 133647364 133647364 G A C3orf36 Missense_Mutation p.P95L 0.14 tolerated_low_confidence(0.75) possibly_damaging(0.851) TCGA-ER-A42L-06 3 133653469 133653469 G A SLCO2A1 3'UTR 0.12 TCGA-ER-A42L-06 3 13381495 13381495 G A NUP210 Silent p.I1110I 0.14 TCGA-ER-A42L-06 3 134327533 134327533 C T KY Missense_Mutation p.G350R 0.11 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 3 136170906 136170906 C T STAG1 Missense_Mutation p.R466K 0.09 tolerated(0.76) benign(0.001) TCGA-ER-A42L-06 3 141011447 141011447 C T ACPL2 Silent p.I281I 0.07 TCGA-ER-A42L-06 3 141499398 141499398 C T GRK7 Silent p.C265C 0.15 TCGA-ER-A42L-06 3 142389935 142389935 C T PLS1 Missense_Mutation p.S112F 0.14 deleterious(0) possibly_damaging(0.87) TCGA-ER-A42L-06 3 142408642 142408642 G A PLS1 Missense_Mutation p.M388I 0.14 tolerated(0.49) benign(0) TCGA-ER-A42L-06 3 142567124 142567124 G A PCOLCE2 Missense_Mutation p.S128F 0.14 deleterious(0) probably_damaging(0.958) TCGA-ER-A42L-06 3 142681299 142681299 T A PAQR9 Nonsense_Mutation p.K294* 0.11 TCGA-ER-A42L-06 3 143513897 143513897 C T SLC9A9 Missense_Mutation p.G160E 0.13 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 3 14536371 14536371 G A GRIP2 RNA 0.10 TCGA-ER-A42L-06 3 148558487 148558487 A G CPB1 Missense_Mutation p.N96S 0.10 deleterious(0.02) possibly_damaging(0.455) TCGA-ER-A42L-06 3 150931472 150931472 C T P2RY14 Silent p.K211K 0.09 TCGA-ER-A42L-06 3 151085946 151085946 G A MED12L Missense_Mutation p.D1118N 0.13 deleterious(0.03) benign(0.373) TCGA-ER-A42L-06 3 151095814 151095814 G A MED12L Missense_Mutation p.R1409K 0.11 tolerated(0.72) benign(0.001) TCGA-ER-A42L-06 3 151154954 151154954 T A IGSF10 Missense_Mutation p.K2465N 0.07 tolerated(0.42) possibly_damaging(0.568) TCGA-ER-A42L-06 3 15529759 15529759 G A COLQ Missense_Mutation p.P92L 0.08 deleterious(0.01) probably_damaging(0.951) TCGA-ER-A42L-06 3 156395589 156395589 C T TIPARP Missense_Mutation p.P35S 0.12 tolerated_low_confidence(0.43) benign(0.367) TCGA-ER-A42L-06 3 15643383 15643383 G A BTD Missense_Mutation p.G9E 0.09 deleterious_low_confidence(0) benign(0.023) TCGA-ER-A42L-06 3 156867342 156867342 G A CCNL1 Silent p.S355S 0.12 TCGA-ER-A42L-06 3 156867344 156867344 A C CCNL1 Missense_Mutation p.S355A 0.12 tolerated(0.23) benign(0.001) TCGA-ER-A42L-06 3 158983065 158983065 G A IQCJ Missense_Mutation p.G118E 0.12 tolerated_low_confidence(0.28) benign(0.037) TCGA-ER-A42L-06 3 164700074 164700074 C T SI Missense_Mutation p.G1791E 0.13 tolerated(0.14) benign(0.001) TCGA-ER-A42L-06 3 164700075 164700075 C T SI Missense_Mutation p.G1791R 0.13 deleterious(0.01) benign(0.007) TCGA-ER-A42L-06 3 164709179 164709179 G A SI Silent p.I1690I 0.09 TCGA-ER-A42L-06 3 164709981 164709981 C T SI Nonsense_Mutation p.W1656* 0.09 TCGA-ER-A42L-06 3 164907576 164907576 G A SLITRK3 Missense_Mutation p.S348F 0.07 tolerated(0.08) possibly_damaging(0.541) TCGA-ER-A42L-06 3 167045832 167045832 C T ZBBX Missense_Mutation p.D254N 0.12 tolerated(0.18) benign(0.01) TCGA-ER-A42L-06 3 168833196 168833196 G A MECOM Missense_Mutation p.P699S 0.10 deleterious(0.03) benign(0.249) TCGA-ER-A42L-06 3 168834490 168834490 G A MECOM Silent p.N267N 0.15 TCGA-ER-A42L-06 3 169639003 169639003 G A SAMD7 Missense_Mutation p.D30N 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 3 170150390 170150390 C T CLDN11 Missense_Mutation p.S157F 0.11 deleterious(0) probably_damaging(0.995) TCGA-ER-A42L-06 3 172643136 172643136 C T SPATA16 Missense_Mutation p.E410K 0.12 tolerated(0.07) possibly_damaging(0.486) TCGA-ER-A42L-06 3 172835519 172835519 C T SPATA16 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.01) benign(0) TCGA-ER-A42L-06 3 174974297 174974297 G A NAALADL2 Missense_Mutation p.G306E 0.15 deleterious(0) probably_damaging(0.991) TCGA-ER-A42L-06 3 175520866 175520866 C T NAALADL2 Missense_Mutation p.P755S 0.17 tolerated(1) benign(0.001) TCGA-ER-A42L-06 3 178546111 178546111 G A KCNMB2 Missense_Mutation p.E125K 0.20 tolerated(0.26) benign(0.055) TCGA-ER-A42L-06 3 183818289 183818289 C T HTR3E Silent p.F43F 0.12 TCGA-ER-A42L-06 3 184072079 184072079 C T CLCN2 Missense_Mutation p.V511M 0.10 deleterious(0) possibly_damaging(0.644) TCGA-ER-A42L-06 3 186953382 186953382 C T MASP1 3'UTR 0.20 TCGA-ER-A42L-06 3 186974536 186974536 C T MASP1 Silent p.E220E 0.14 TCGA-ER-A42L-06 3 193052747 193052747 C T ATP13A5 Missense_Mutation p.G362E 0.11 tolerated(0.84) probably_damaging(0.912) TCGA-ER-A42L-06 3 193210711 193210711 C T ATP13A4 Silent p.E176E 0.07 TCGA-ER-A42L-06 3 193232635 193232635 C T ATP13A4 Missense_Mutation p.G29D 0.11 tolerated(0.24) benign(0.029) TCGA-ER-A42L-06 3 195925225 195925225 G A ZDHHC19 Missense_Mutation p.P291S 0.11 tolerated(0.09) benign(0.03) TCGA-ER-A42L-06 3 2778010 2778010 C T CNTN4 Missense_Mutation p.P56L 0.05 deleterious(0.01) probably_damaging(0.955) TCGA-ER-A42L-06 3 35771020 35771020 C T ARPP21 Missense_Mutation p.P450L 0.13 deleterious(0) possibly_damaging(0.764) TCGA-ER-A42L-06 3 36879930 36879930 G A TRANK1 Missense_Mutation p.S1773F 0.12 deleterious(0) possibly_damaging(0.897) TCGA-ER-A42L-06 3 36897993 36897993 G A TRANK1 Missense_Mutation p.L1030F 0.06 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 3 38087037 38087037 C T DLEC1 Missense_Mutation p.R139W 0.18 deleterious(0.01) probably_damaging(0.921) TCGA-ER-A42L-06 3 38157948 38157948 C T DLEC1 Silent p.I1287I 0.09 TCGA-ER-A42L-06 3 38411589 38411589 C T XYLB Missense_Mutation p.S230F 0.19 deleterious(0) possibly_damaging(0.853) TCGA-ER-A42L-06 3 38592577 38592577 G A SCN5A Silent p.I1762I 0.16 TCGA-ER-A42L-06 3 38598755 38598755 C T SCN5A Missense_Mutation p.M1422I 0.12 tolerated(0.06) probably_damaging(0.98) TCGA-ER-A42L-06 3 38627257 38627257 C T SCN5A Nonsense_Mutation p.W904* 0.17 TCGA-ER-A42L-06 3 3886905 3886905 G A LRRN1 Missense_Mutation p.E194K 0.10 deleterious(0) possibly_damaging(0.838) TCGA-ER-A42L-06 3 38941495 38941495 G A SCN11A Missense_Mutation p.R638C 0.14 deleterious(0) probably_damaging(0.959) TCGA-ER-A42L-06 3 38991680 38991680 G A SCN11A Silent p.A58A 0.13 TCGA-ER-A42L-06 3 40231804 40231804 G A MYRIP Silent p.R505R 0.10 TCGA-ER-A42L-06 3 40231805 40231805 G A MYRIP Missense_Mutation p.E506K 0.10 tolerated(0.07) possibly_damaging(0.811) TCGA-ER-A42L-06 3 42750511 42750511 G A CCDC13 Silent p.F703F 0.06 TCGA-ER-A42L-06 3 46245706 46245706 C T CCR1 Silent p.G33G 0.07 TCGA-ER-A42L-06 3 46415026 46415026 C T CCR5 Silent p.V211V 0.14 TCGA-ER-A42L-06 3 46450371 46450371 C A CCRL2 Missense_Mutation p.F279L 0.10 tolerated(0.45) benign(0.058) TCGA-ER-A42L-06 3 49162254 49162254 G A LAMB2 Missense_Mutation p.P997S 0.08 deleterious(0.02) possibly_damaging(0.733) TCGA-ER-A42L-06 3 49699035 49699035 C T BSN Missense_Mutation p.R3253W 0.10 unknown(0) TCGA-ER-A42L-06 3 49738101 49738101 G A RNF123 Silent p.L412L 0.10 TCGA-ER-A42L-06 3 49738103 49738103 G A RNF123 Missense_Mutation p.R413K 0.10 tolerated(0.63) benign(0.001) TCGA-ER-A42L-06 3 49896968 49896968 G A CAMKV Missense_Mutation p.T430I 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-ER-A42L-06 3 50222238 50222238 C T SEMA3F Silent p.L483L 0.13 TCGA-ER-A42L-06 3 51697238 51697238 C T RAD54L2 Silent p.S1402S 0.15 TCGA-ER-A42L-06 3 52004126 52004126 C T ABHD14B Missense_Mutation p.V96M 0.18 deleterious(0) probably_damaging(0.956) TCGA-ER-A42L-06 3 52472963 52472963 G A SEMA3G Silent p.I494I 0.11 TCGA-ER-A42L-06 3 52485173 52485173 G A TNNC1 3'UTR 0.20 TCGA-ER-A42L-06 3 52643874 52643874 A G PBRM1 Silent p.D674D 0.12 TCGA-ER-A42L-06 3 52854702 52854702 G A ITIH4 Silent p.V593V 0.09 TCGA-ER-A42L-06 3 52858864 52858864 G A ITIH4 Silent p.I290I 0.07 TCGA-ER-A42L-06 3 53139703 53139703 T C RFT1 Missense_Mutation p.T315A 0.15 tolerated(0.27) benign(0.002) TCGA-ER-A42L-06 3 53265454 53265454 G A TKT Silent p.T295T 0.15 TCGA-ER-A42L-06 3 53265455 53265455 G A TKT Missense_Mutation p.T295I 0.16 tolerated(0.14) benign(0.039) TCGA-ER-A42L-06 3 53837584 53837584 C T CACNA1D Missense_Mutation p.S1877L 0.09 tolerated_low_confidence(0.3) benign(0.016) TCGA-ER-A42L-06 3 53844128 53844128 C T CACNA1D Missense_Mutation p.P2019S 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ER-A42L-06 3 53844129 53844129 C T CACNA1D Missense_Mutation p.P2019L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A42L-06 3 53844201 53844201 C T CACNA1D Missense_Mutation p.S2043F 0.19 tolerated_low_confidence(0.07) benign(0.009) TCGA-ER-A42L-06 3 54871252 54871252 G A CACNA2D3 Missense_Mutation p.E489K 0.09 deleterious(0) probably_damaging(0.995) TCGA-ER-A42L-06 3 58520702 58520702 G A ACOX2 Silent p.A44A 0.09 TCGA-ER-A42L-06 3 62739405 62739405 C T CADPS Missense_Mutation p.G200E 0.08 deleterious(0) probably_damaging(0.931) TCGA-ER-A42L-06 3 62739406 62739406 C T CADPS Missense_Mutation p.G200R 0.08 deleterious(0) probably_damaging(0.953) TCGA-ER-A42L-06 3 87289879 87289879 G A CHMP2B Missense_Mutation p.R22Q 0.05 deleterious(0.01) benign(0.24) TCGA-ER-A42L-06 3 95374389 95374389 G A MTHFD2P1 RNA 0.08 TCGA-ER-A42L-06 3 97806367 97806367 G A OR5AC2 Silent p.L117L 0.14 TCGA-ER-A42L-06 3 97869000 97869000 C T OR5H14 Silent p.F257F 0.12 TCGA-ER-A42L-06 3 97888402 97888402 C T OR5H15 Missense_Mutation p.P287S 0.10 deleterious(0.01) possibly_damaging(0.671) TCGA-ER-A42L-06 3 98188611 98188611 G A OR5K1 Missense_Mutation p.G64E 0.12 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 3 9959258 9959258 G A IL17RC Missense_Mutation p.G87S 0.05 deleterious_low_confidence(0.01) benign(0.015) TCGA-ER-A42L-06 3 9991677 9991677 C T PRRT3 Missense_Mutation p.M41I 0.15 deleterious_low_confidence(0.02) benign(0.005) TCGA-ER-A42L-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-ER-A42L-06 4 100349710 100349710 C T ADH7 Silent p.V86V 0.05 TCGA-ER-A42L-06 4 100512909 100512909 G A MTTP Silent p.L240L 0.10 TCGA-ER-A42L-06 4 103571759 103571759 G A MANBA Missense_Mutation p.H602Y 0.11 tolerated(0.06) possibly_damaging(0.601) TCGA-ER-A42L-06 4 109735013 109735013 C T COL25A1 3'UTR 0.12 TCGA-ER-A42L-06 4 110687908 110687908 C T CFI Missense_Mutation p.D44N 0.10 tolerated(0.67) benign(0.001) TCGA-ER-A42L-06 4 119944594 119944594 C T SYNPO2 Nonsense_Mutation p.Q39* 0.13 TCGA-ER-A42L-06 4 123868582 123868582 G A SPATA5 Silent p.Q551Q 0.06 TCGA-ER-A42L-06 4 126242620 126242620 G A FAT4 Missense_Mutation p.R1685Q 0.08 probably_damaging(0.922) TCGA-ER-A42L-06 4 139140446 139140446 A T SLC7A11 Nonsense_Mutation p.Y240* 0.07 TCGA-ER-A42L-06 4 15437502 15437502 C T C1QTNF7 Silent p.P52P 0.11 TCGA-ER-A42L-06 4 155156620 155156620 C T DCHS2 Missense_Mutation p.V2607M 0.08 tolerated(0.66) benign(0.008) TCGA-ER-A42L-06 4 164506928 164506928 C T MARCH1 Missense_Mutation p.M132I 0.05 tolerated(0.1) probably_damaging(0.989) TCGA-ER-A42L-06 4 165962460 165962460 C T TRIM60 Silent p.P412P 0.10 TCGA-ER-A42L-06 4 166924569 166924569 G A TLL1 Missense_Mutation p.G220E 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-ER-A42L-06 4 169632733 169632733 C A PALLD Silent p.A541A 0.07 TCGA-ER-A42L-06 4 170190456 170190456 G A SH3RF1 Intron 0.17 TCGA-ER-A42L-06 4 175896841 175896841 C T ADAM29 Silent p.I55I 0.12 TCGA-ER-A42L-06 4 188924150 188924150 C T ZFP42 Silent p.L63L 0.06 TCGA-ER-A42L-06 4 22749236 22749236 G A GBA3 Missense_Mutation p.A202T 0.13 deleterious(0.04) probably_damaging(1) TCGA-ER-A42L-06 4 23815931 23815931 G A PPARGC1A Missense_Mutation p.S392F 0.09 deleterious(0) possibly_damaging(0.862) TCGA-ER-A42L-06 4 3519914 3519914 G A LRPAP1 Missense_Mutation p.H200Y 0.09 tolerated(0.19) benign(0.024) TCGA-ER-A42L-06 4 42145871 42145871 C T BEND4 Missense_Mutation p.E210K 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.905) TCGA-ER-A42L-06 4 42403052 42403052 A C SHISA3 Missense_Mutation p.I101L 0.11 tolerated(0.18) benign(0.373) TCGA-ER-A42L-06 4 46737015 46737015 C T COX7B2 Nonsense_Mutation p.W65* 0.13 TCGA-ER-A42L-06 4 48170629 48170629 G A TEC Silent p.L157L 0.09 TCGA-ER-A42L-06 4 71232595 71232595 C T SMR3A Missense_Mutation p.P97S 0.07 tolerated_low_confidence(0.19) unknown(0) TCGA-ER-A42L-06 4 73012773 73012773 C T NPFFR2 Silent p.V271V 0.04 TCGA-ER-A42L-06 4 77255316 77255316 G A CCDC158 Missense_Mutation p.S890F 0.07 deleterious(0.02) benign(0.332) TCGA-ER-A42L-06 4 77817360 77817360 G A SOWAHB Missense_Mutation p.S548L 0.13 tolerated(0.06) benign(0.307) TCGA-ER-A42L-06 4 80246768 80246768 C T NAA11 Silent p.Q88Q 0.07 TCGA-ER-A42L-06 4 81967607 81967607 G A BMP3 Silent p.R344R 0.08 TCGA-ER-A42L-06 4 83417246 83417246 C T TMEM150C Missense_Mutation p.G113E 0.15 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 4 85672726 85672726 G A WDFY3 Silent p.F1961F 0.11 TCGA-ER-A42L-06 4 954842 954842 G A DGKQ Missense_Mutation p.P908S 0.09 deleterious(0.02) probably_damaging(0.955) TCGA-ER-A42L-06 5 101816055 101816055 C T SLCO6A1 Missense_Mutation p.E148K 0.06 tolerated(0.07) benign(0.016) TCGA-ER-A42L-06 5 102361024 102361024 C T PAM Missense_Mutation p.S892L 0.12 tolerated(0.47) possibly_damaging(0.573) TCGA-ER-A42L-06 5 10258377 10258377 A G CCT5 Missense_Mutation p.I229V 0.12 tolerated(1) benign(0.019) TCGA-ER-A42L-06 5 121786353 121786353 C T SNCAIP Missense_Mutation p.S604F 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-ER-A42L-06 5 129521355 129521355 T C CHSY3 Silent p.P840P 0.09 TCGA-ER-A42L-06 5 135692878 135692878 G A TRPC7 Silent p.S66S 0.09 TCGA-ER-A42L-06 5 136324196 136324196 G A SPOCK1 Silent p.I281I 0.06 TCGA-ER-A42L-06 5 13735936 13735936 G A DNAH5 Missense_Mutation p.S3854F 0.07 possibly_damaging(0.485) TCGA-ER-A42L-06 5 13752396 13752396 G A DNAH5 Silent p.I3625I 0.17 TCGA-ER-A42L-06 5 13769675 13769675 C T DNAH5 Missense_Mutation p.A3219T 0.11 possibly_damaging(0.787) TCGA-ER-A42L-06 5 137780108 137780108 C T REEP2 Missense_Mutation p.P63S 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 5 13811764 13811764 G A DNAH5 Missense_Mutation p.P2467S 0.10 benign(0.005) TCGA-ER-A42L-06 5 13923474 13923474 C T DNAH5 Missense_Mutation p.G118E 0.17 probably_damaging(0.931) TCGA-ER-A42L-06 5 140183220 140183220 C T PCDHA3 Intron 0.12 TCGA-ER-A42L-06 5 140188595 140188595 C T PCDHA4 Missense_Mutation p.S608L 0.13 tolerated_low_confidence(0.05) possibly_damaging(0.577) TCGA-ER-A42L-06 5 140308675 140308675 C T PCDHAC1 Missense_Mutation p.S733L 0.08 tolerated(0.34) benign(0.001) TCGA-ER-A42L-06 5 140389226 140389226 G A PCDHAC1 Missense_Mutation p.E866K 0.08 tolerated(0.21) possibly_damaging(0.839) TCGA-ER-A42L-06 5 140431764 140431764 G A PCDHB1 Missense_Mutation p.D237N 0.08 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 5 140475181 140475181 G A PCDHB2 Silent p.R269R 0.06 TCGA-ER-A42L-06 5 140579922 140579922 C T PCDHB11 Missense_Mutation p.P192L 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ER-A42L-06 5 140594419 140594419 G A PCDHB13 Missense_Mutation p.E242K 0.09 deleterious_low_confidence(0.05) benign(0.018) TCGA-ER-A42L-06 5 140626147 140626147 C T PCDHB15 Missense_Mutation p.S334F 0.10 tolerated_low_confidence(0.29) benign(0.001) TCGA-ER-A42L-06 5 140711638 140711638 G A PCDHGA1 Missense_Mutation p.E463K 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ER-A42L-06 5 140726004 140726004 G A PCDHGA3 Missense_Mutation p.G802R 0.14 tolerated_low_confidence(0.16) benign(0.002) TCGA-ER-A42L-06 5 140745901 140745901 C T PCDHGA5 Silent p.I668I 0.11 TCGA-ER-A42L-06 5 140793903 140793903 C T PCDHGA10 Silent p.T387T 0.07 TCGA-ER-A42L-06 5 141046037 141046037 G A ARAP3 Silent p.P842P 0.15 TCGA-ER-A42L-06 5 145379738 145379738 G A SH3RF2 Missense_Mutation p.E166K 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-ER-A42L-06 5 150028702 150028702 A C SYNPO Missense_Mutation p.M533L 0.11 tolerated_low_confidence(0.07) benign(0.003) TCGA-ER-A42L-06 5 150071405 150071405 G A RBM22 Missense_Mutation p.P391S 0.05 tolerated(0.22) benign(0.017) TCGA-ER-A42L-06 5 151784108 151784108 G A NMUR2 Silent p.F189F 0.09 TCGA-ER-A42L-06 5 151784402 151784402 G A NMUR2 Silent p.D91D 0.10 TCGA-ER-A42L-06 5 156531714 156531714 G A HAVCR2 Silent p.A147A 0.30 TCGA-ER-A42L-06 5 156915302 156915302 G A ADAM19 Missense_Mutation p.P841S 0.05 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 5 159776704 159776704 G A C1QTNF2 Missense_Mutation p.P155L 0.11 tolerated(0.38) unknown(0) TCGA-ER-A42L-06 5 16451855 16451855 G A ZNF622 Nonsense_Mutation p.Q449* 0.13 TCGA-ER-A42L-06 5 169125406 169125406 G A DOCK2 Silent p.G336G 0.07 TCGA-ER-A42L-06 5 170863198 170863198 C T FGF18 Silent p.L57L 0.24 TCGA-ER-A42L-06 5 174936156 174936156 C T SFXN1 Nonsense_Mutation p.Q96* 0.07 TCGA-ER-A42L-06 5 176938774 176938774 G A DDX41 3'UTR 0.06 TCGA-ER-A42L-06 5 177686729 177686729 C T COL23A1 Missense_Mutation p.G241E 0.05 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 5 178392081 178392081 C T ZNF454 Missense_Mutation p.H226Y 0.05 tolerated(0.08) possibly_damaging(0.656) TCGA-ER-A42L-06 5 23509190 23509190 G A PRDM9 Silent p.E16E 0.15 TCGA-ER-A42L-06 5 31799581 31799581 G A PDZD2 Missense_Mutation p.E76K 0.17 deleterious(0.01) benign(0.437) TCGA-ER-A42L-06 5 32073987 32073987 G A PDZD2 Silent p.G925G 0.08 TCGA-ER-A42L-06 5 32739102 32739102 C T NPR3 Missense_Mutation p.S342L 0.10 tolerated(0.18) probably_damaging(0.935) TCGA-ER-A42L-06 5 33937952 33937952 C T RXFP3 Silent p.Y369Y 0.07 TCGA-ER-A42L-06 5 35727825 35727825 C T SPEF2 Missense_Mutation p.S988L 0.15 deleterious(0) probably_damaging(0.991) TCGA-ER-A42L-06 5 37302907 37302907 G A NUP155 Missense_Mutation p.L1141F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-ER-A42L-06 5 40947778 40947778 A G C7 Silent p.Q271Q 0.14 TCGA-ER-A42L-06 5 40964861 40964861 C T C7 Missense_Mutation p.P590S 0.12 tolerated(0.15) probably_damaging(0.968) TCGA-ER-A42L-06 5 41154099 41154099 C T C6 Silent p.R701R 0.10 TCGA-ER-A42L-06 5 45262531 45262531 G A HCN1 Missense_Mutation p.P722L 0.21 deleterious_low_confidence(0.05) benign(0.002) TCGA-ER-A42L-06 5 45462086 45462086 G A HCN1 Silent p.L291L 0.19 TCGA-ER-A42L-06 5 50090899 50090899 C T PARP8 Missense_Mutation p.S359L 0.05 tolerated_low_confidence(0.12) benign(0.005) TCGA-ER-A42L-06 5 52338039 52338039 C T ITGA2 Silent p.L95L 0.05 TCGA-ER-A42L-06 5 5465223 5465223 T C KIAA0947 Missense_Mutation p.S1926P 0.09 tolerated(0.1) benign(0.134) TCGA-ER-A42L-06 5 56777623 56777623 G A ACTBL2 Silent p.S304S 0.08 TCGA-ER-A42L-06 5 63257039 63257039 G A HTR1A Missense_Mutation p.P170S 0.07 tolerated(0.06) probably_damaging(1) TCGA-ER-A42L-06 5 68715934 68715934 G C MARVELD2 Missense_Mutation p.S241T 0.09 tolerated(0.44) benign(0.133) TCGA-ER-A42L-06 5 75428043 75428043 C T SV2C Silent p.F156F 0.11 TCGA-ER-A42L-06 5 75596749 75596749 C T SV2C Missense_Mutation p.T611I 0.07 tolerated(0.2) possibly_damaging(0.828) TCGA-ER-A42L-06 5 77452119 77452119 A T AP3B1 Missense_Mutation p.I479N 0.06 deleterious(0) probably_damaging(0.979) TCGA-ER-A42L-06 5 78378726 78378726 G A BHMT2 Missense_Mutation p.G182E 0.04 tolerated(0.1) probably_damaging(0.999) TCGA-ER-A42L-06 5 79027122 79027122 C T CMYA5 Missense_Mutation p.S845F 0.10 probably_damaging(0.979) TCGA-ER-A42L-06 5 79374017 79374017 C T THBS4 Silent p.A744A 0.13 TCGA-ER-A42L-06 5 79768611 79768611 C A ZFYVE16 Silent p.T1352T 0.08 TCGA-ER-A42L-06 5 87564667 87564667 G A TMEM161B 5'Flank 0.13 TCGA-ER-A42L-06 5 89815239 89815239 A T LYSMD3 Silent p.S106S 0.08 TCGA-ER-A42L-06 5 89925212 89925212 G A GPR98 Silent p.V565V 0.13 TCGA-ER-A42L-06 5 917203 917203 T C TRIP13 Silent p.L428L 0.22 TCGA-ER-A42L-06 5 93076586 93076586 G A POU5F2 Silent p.F228F 0.18 TCGA-ER-A42L-06 5 95734736 95734736 G A PCSK1 Silent p.L479L 0.10 TCGA-ER-A42L-06 5 95734737 95734737 G A PCSK1 Silent p.A478A 0.10 TCGA-ER-A42L-06 5 96430636 96430636 G A LIX1 Missense_Mutation p.S222F 0.12 tolerated(0.31) benign(0.078) TCGA-ER-A42L-06 6 102124560 102124560 C T GRIK2 Missense_Mutation p.R202C 0.08 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 6 105406088 105406088 G A LIN28B Missense_Mutation p.G42E 0.08 deleterious(0) probably_damaging(0.993) TCGA-ER-A42L-06 6 116833447 116833447 A G TRAPPC3L Intron 0.09 TCGA-ER-A42L-06 6 116833448 116833448 T A TRAPPC3L Intron 0.09 TCGA-ER-A42L-06 6 128134546 128134546 C T THEMIS Missense_Mutation p.E414K 0.10 deleterious(0.04) benign(0.076) TCGA-ER-A42L-06 6 131222107 131222107 G A EPB41L2 Silent p.T381T 0.10 TCGA-ER-A42L-06 6 132004286 132004286 C T ENPP3 Silent p.I368I 0.08 TCGA-ER-A42L-06 6 132618414 132618414 A T MOXD1 Missense_Mutation p.Y574N 0.06 deleterious(0.04) possibly_damaging(0.901) TCGA-ER-A42L-06 6 136913734 136913734 G A MAP3K5 Missense_Mutation p.S966F 0.06 deleterious(0.01) benign(0.027) TCGA-ER-A42L-06 6 137330609 137330609 C T IL20RA Missense_Mutation p.V142M 0.10 deleterious(0.02) possibly_damaging(0.746) TCGA-ER-A42L-06 6 142490804 142490804 C A VTA1 Silent p.R109R 0.12 TCGA-ER-A42L-06 6 146720092 146720092 C T GRM1 Silent p.F639F 0.04 TCGA-ER-A42L-06 6 150004748 150004748 G A LATS1 Missense_Mutation p.P493S 0.06 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-ER-A42L-06 6 151674031 151674031 G A AKAP12 Missense_Mutation p.G1502E 0.06 tolerated(0.11) benign(0.146) TCGA-ER-A42L-06 6 158483101 158483101 G A SYNJ2 Silent p.G344G 0.11 TCGA-ER-A42L-06 6 160230149 160230149 G A PNLDC1 Missense_Mutation p.G237S 0.09 deleterious(0.02) possibly_damaging(0.887) TCGA-ER-A42L-06 6 161152886 161152886 C T PLG Silent p.F516F 0.10 TCGA-ER-A42L-06 6 17837156 17837156 G A KIF13A Silent p.L370L 0.04 TCGA-ER-A42L-06 6 17837157 17837157 T A KIF13A Missense_Mutation p.E369D 0.04 tolerated(0.16) probably_damaging(0.992) TCGA-ER-A42L-06 6 28543634 28543634 C T SCAND3 Missense_Mutation p.G283E 0.05 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-ER-A42L-06 6 29555739 29555739 C T OR2H2 Silent p.S6S 0.04 TCGA-ER-A42L-06 6 30889744 30889744 C T VARS2 Missense_Mutation p.P623L 0.08 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 6 30889745 30889745 C T VARS2 Silent p.P623P 0.08 TCGA-ER-A42L-06 6 30919629 30919629 G A DPCR1 Missense_Mutation p.D1130N 0.09 tolerated(0.17) possibly_damaging(0.754) TCGA-ER-A42L-06 6 31601243 31601243 C T PRRC2A Silent p.I1469I 0.09 TCGA-ER-A42L-06 6 33283663 33283663 G A ZBTB22 Missense_Mutation p.S344F 0.05 deleterious(0.04) benign(0.146) TCGA-ER-A42L-06 6 36298315 36298315 C T C6orf222 Silent p.T51T 0.10 TCGA-ER-A42L-06 6 38980061 38980061 G A DNAH8 Missense_Mutation p.R4264K 0.06 probably_damaging(0.999) TCGA-ER-A42L-06 6 41248885 41248885 G A TREM1 Missense_Mutation p.S138L 0.11 tolerated(0.8) benign(0.042) TCGA-ER-A42L-06 6 42141520 42141520 G A GUCA1A Missense_Mutation p.E57K 0.08 tolerated(0.07) benign(0.004) TCGA-ER-A42L-06 6 43305569 43305569 G A ZNF318 Missense_Mutation p.S2056F 0.09 benign(0.317) TCGA-ER-A42L-06 6 43639464 43639464 A T MRPS18A 3'UTR 0.16 TCGA-ER-A42L-06 6 44198553 44198553 C T SLC29A1 Silent p.F231F 0.10 TCGA-ER-A42L-06 6 44272258 44272258 G A AARS2 Missense_Mutation p.P589S 0.15 tolerated(0.28) possibly_damaging(0.511) TCGA-ER-A42L-06 6 49448694 49448694 C T CENPQ Silent p.V126V 0.08 TCGA-ER-A42L-06 6 52109249 52109249 G A IL17F 5'UTR 0.08 TCGA-ER-A42L-06 6 52109250 52109250 T G IL17F 5'UTR 0.08 TCGA-ER-A42L-06 6 54804704 54804704 C T FAM83B Missense_Mutation p.S312L 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-ER-A42L-06 6 55196536 55196536 G A GFRAL Missense_Mutation p.E16K 0.10 tolerated(0.42) benign(0.003) TCGA-ER-A42L-06 6 56473718 56473718 G A DST Intron 0.06 TCGA-ER-A42L-06 6 70637811 70637811 C T COL19A1 Missense_Mutation p.P93S 0.09 deleterious(0.01) unknown(0) TCGA-ER-A42L-06 6 70890237 70890237 C T COL19A1 Missense_Mutation p.P901S 0.12 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 6 72678741 72678741 G A RIMS1 Missense_Mutation p.E74K 0.09 tolerated(0.5) probably_damaging(0.952) TCGA-ER-A42L-06 6 72975146 72975146 C T RIMS1 Missense_Mutation p.S1083F 0.11 deleterious(0.05) benign(0.016) TCGA-ER-A42L-06 6 74310152 74310152 G A SLC17A5 Silent p.I424I 0.08 TCGA-ER-A42L-06 6 7585754 7585754 G A DSP Silent p.K2753K 0.10 TCGA-ER-A42L-06 6 7585755 7585755 G A DSP Missense_Mutation p.G2754R 0.10 probably_damaging(0.984) TCGA-ER-A42L-06 6 8417658 8417658 G A SLC35B3 Missense_Mutation p.P284S 0.11 tolerated(0.51) benign(0.023) TCGA-ER-A42L-06 6 90408708 90408708 G A MDN1 Missense_Mutation p.S3015F 0.07 benign(0.013) TCGA-ER-A42L-06 7 100084731 100084731 G A NYAP1 Missense_Mutation p.R119Q 0.23 tolerated(0.08) benign(0.003) TCGA-ER-A42L-06 7 100345790 100345790 C T ZAN Missense_Mutation p.P352S 0.13 probably_damaging(0.999) TCGA-ER-A42L-06 7 100552960 100552960 C T MUC3A Silent p.L535L 0.07 TCGA-ER-A42L-06 7 100684875 100684875 G A MUC17 Missense_Mutation p.S3393N 0.12 benign(0.08) TCGA-ER-A42L-06 7 101870865 101870865 C T CUX1 Nonsense_Mutation p.Q1128* 0.06 TCGA-ER-A42L-06 7 103143606 103143606 G A RELN Silent p.F2782F 0.07 TCGA-ER-A42L-06 7 103276702 103276702 G A RELN Silent p.F761F 0.14 TCGA-ER-A42L-06 7 105148645 105148645 C T PUS7 Missense_Mutation p.M105I 0.10 tolerated(0.11) probably_damaging(0.989) TCGA-ER-A42L-06 7 107434247 107434247 C T SLC26A3 Missense_Mutation p.E71K 0.06 tolerated(0.07) possibly_damaging(0.861) TCGA-ER-A42L-06 7 117243596 117243596 C T CFTR Nonsense_Mutation p.Q890* 0.10 TCGA-ER-A42L-06 7 117250683 117250683 C T CFTR Silent p.F1033F 0.10 TCGA-ER-A42L-06 7 119914668 119914668 C T KCND2 5'UTR 0.04 TCGA-ER-A42L-06 7 120782053 120782053 G A CPED1 Missense_Mutation p.G638E 0.19 deleterious(0) probably_damaging(0.927) TCGA-ER-A42L-06 7 120965434 120965434 C T WNT16 5'Flank 0.17 TCGA-ER-A42L-06 7 122338652 122338652 C T RNF133 Silent p.R107R 0.10 TCGA-ER-A42L-06 7 122839998 122839998 C T SLC13A1 Translation_Start_Site p.M1? 0.12 deleterious(0.01) possibly_damaging(0.775) TCGA-ER-A42L-06 7 126249523 126249523 C T GRM8 Missense_Mutation p.E463K 0.24 tolerated(0.44) benign(0.257) TCGA-ER-A42L-06 7 128478854 128478854 G A FLNC Missense_Mutation p.E470K 0.12 tolerated(0.08) benign(0.04) TCGA-ER-A42L-06 7 129348935 129348935 C T NRF1 Silent p.I209I 0.09 TCGA-ER-A42L-06 7 130021677 130021677 C T CPA1 Silent p.N118N 0.18 TCGA-ER-A42L-06 7 130561579 130561579 G A MIR29A RNA 0.29 TCGA-ER-A42L-06 7 131859653 131859653 G A PLXNA4 Missense_Mutation p.H1301Y 0.17 tolerated(0.1) possibly_damaging(0.624) TCGA-ER-A42L-06 7 131864472 131864472 G A PLXNA4 Missense_Mutation p.S1283F 0.10 deleterious(0.04) probably_damaging(0.998) TCGA-ER-A42L-06 7 135370406 135370406 C T SLC13A4 Missense_Mutation p.G490E 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 7 137363326 137363326 C T DGKI Missense_Mutation p.E195K 0.08 tolerated(0.06) possibly_damaging(0.524) TCGA-ER-A42L-06 7 138764524 138764524 A G ZC3HAV1 Missense_Mutation p.L388P 0.10 tolerated(0.31) probably_damaging(0.979) TCGA-ER-A42L-06 7 138764525 138764525 G A ZC3HAV1 Missense_Mutation p.L388F 0.10 tolerated(0.66) probably_damaging(0.969) TCGA-ER-A42L-06 7 139164393 139164393 G A KLRG2 Missense_Mutation p.P329S 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-ER-A42L-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.08 deleterious(0) probably_damaging(0.967) TCGA-ER-A42L-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.08 deleterious(0) possibly_damaging(0.838) TCGA-ER-A42L-06 7 141490901 141490901 A C TAS2R5 Missense_Mutation p.Y247S 0.12 tolerated(0.44) benign(0.017) TCGA-ER-A42L-06 7 142045270 142045270 G A TRBV4-2 5'UTR 0.12 TCGA-ER-A42L-06 7 142162012 142162012 G A TRBV6-6 Missense_Mutation p.S88L 0.20 tolerated(0.26) benign(0.005) TCGA-ER-A42L-06 7 142162019 142162019 A G TRBV6-6 Missense_Mutation p.S86P 0.14 deleterious(0) probably_damaging(0.987) TCGA-ER-A42L-06 7 142223941 142223941 C T TRBV11-1 Missense_Mutation p.D76N 0.07 tolerated(0.15) benign(0.034) TCGA-ER-A42L-06 7 142457353 142457353 C T PRSS1 Silent p.I6I 0.11 TCGA-ER-A42L-06 7 142459745 142459745 C T PRSS1 Silent p.D107D 0.15 TCGA-ER-A42L-06 7 142649655 142649655 G A KEL Nonsense_Mutation p.Q382* 0.12 TCGA-ER-A42L-06 7 142962358 142962358 A T GSTK1 Missense_Mutation p.E186V 0.27 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 7 143054116 143054116 C T FAM131B Splice_Site p.X204_splice 0.07 TCGA-ER-A42L-06 7 143400376 143400376 C T FAM115C Missense_Mutation p.P97S 0.11 tolerated(0.32) benign(0.094) TCGA-ER-A42L-06 7 143657506 143657506 C T OR2F1 Missense_Mutation p.S148F 0.12 deleterious(0.01) probably_damaging(0.918) TCGA-ER-A42L-06 7 143792860 143792860 C T OR2A12 Silent p.I220I 0.06 TCGA-ER-A42L-06 7 143826566 143826566 C T OR2A14 Missense_Mutation p.R121C 0.08 deleterious(0) probably_damaging(0.997) TCGA-ER-A42L-06 7 143827080 143827080 G A OR2A14 Missense_Mutation p.R292K 0.17 deleterious(0.04) possibly_damaging(0.797) TCGA-ER-A42L-06 7 149500574 149500574 C T SSPO RNA 0.09 TCGA-ER-A42L-06 7 150174737 150174737 G A GIMAP8 Missense_Mutation p.D623N 0.06 tolerated(0.3) benign(0.007) TCGA-ER-A42L-06 7 150174894 150174894 C T GIMAP8 3'UTR 0.16 TCGA-ER-A42L-06 7 150269428 150269428 C T GIMAP4 Silent p.F90F 0.25 TCGA-ER-A42L-06 7 150440128 150440128 C T GIMAP5 Silent p.L301L 0.10 TCGA-ER-A42L-06 7 150490224 150490224 C T TMEM176B Silent p.E184E 0.04 TCGA-ER-A42L-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.12 tolerated(1) benign(0.001) TCGA-ER-A42L-06 7 150554207 150554207 C T AOC1 Silent p.L217L 0.24 TCGA-ER-A42L-06 7 150752154 150752154 G A CDK5 Missense_Mutation p.P204S 0.09 deleterious(0.03) probably_damaging(1) TCGA-ER-A42L-06 7 150841010 150841010 C T AGAP3 Missense_Mutation p.R906C 0.08 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-ER-A42L-06 7 154684471 154684471 G A DPP6 3'UTR 0.20 TCGA-ER-A42L-06 7 157691406 157691406 C T PTPRN2 Missense_Mutation p.E583K 0.17 tolerated(1) benign(0.012) TCGA-ER-A42L-06 7 19184938 19184938 G A FERD3L Silent p.F16F 0.19 TCGA-ER-A42L-06 7 20198403 20198403 G A MACC1 Silent p.I527I 0.11 TCGA-ER-A42L-06 7 20198606 20198606 A G MACC1 Silent p.L460L 0.05 TCGA-ER-A42L-06 7 20431099 20431099 G A ITGB8 Missense_Mutation p.G345E 0.19 tolerated(0.28) probably_damaging(0.99) TCGA-ER-A42L-06 7 20685389 20685389 C T ABCB5 Missense_Mutation p.S230L 0.24 deleterious(0.05) possibly_damaging(0.755) TCGA-ER-A42L-06 7 21906166 21906166 G T DNAH11 Nonsense_Mutation p.E3866* 0.08 TCGA-ER-A42L-06 7 23825128 23825128 A C STK31 Missense_Mutation p.E727A 0.07 deleterious(0) probably_damaging(0.994) TCGA-ER-A42L-06 7 23825160 23825160 G A STK31 Missense_Mutation p.E738K 0.08 tolerated(0.08) possibly_damaging(0.463) TCGA-ER-A42L-06 7 27185469 27185469 C T HOXA6 Silent p.L170L 0.11 TCGA-ER-A42L-06 7 29605923 29605923 G A PRR15 5'UTR 0.22 TCGA-ER-A42L-06 7 29980367 29980367 C T SCRN1 Missense_Mutation p.E244K 0.24 tolerated(0.74) benign(0.017) TCGA-ER-A42L-06 7 31614197 31614197 A G CCDC129 Missense_Mutation p.I173V 0.22 deleterious(0.04) benign(0.303) TCGA-ER-A42L-06 7 32109988 32109988 C T PDE1C Intron 0.11 TCGA-ER-A42L-06 7 36461540 36461540 T G ANLN Missense_Mutation p.D746E 0.26 deleterious(0) possibly_damaging(0.786) TCGA-ER-A42L-06 7 38431387 38431387 C A AMPH Nonsense_Mutation p.E614* 0.12 TCGA-ER-A42L-06 7 39491254 39491254 C T POU6F2 Silent p.S452S 0.22 TCGA-ER-A42L-06 7 42079802 42079802 G A GLI3 Missense_Mutation p.P288L 0.06 tolerated(1) probably_damaging(0.999) TCGA-ER-A42L-06 7 42079803 42079803 G A GLI3 Missense_Mutation p.P288S 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-ER-A42L-06 7 42959602 42959602 G A PSMA2 Intron 0.21 TCGA-ER-A42L-06 7 43477876 43477876 C T HECW1 Intron 0.15 TCGA-ER-A42L-06 7 43490510 43490510 G A HECW1 Missense_Mutation p.D828N 0.17 deleterious(0.03) possibly_damaging(0.468) TCGA-ER-A42L-06 7 44713490 44713490 C T OGDH Silent p.F246F 0.05 TCGA-ER-A42L-06 7 45699709 45699709 G A ADCY1 Missense_Mutation p.G459E 0.18 deleterious(0) probably_damaging(0.985) TCGA-ER-A42L-06 7 48311797 48311797 G A ABCA13 Missense_Mutation p.G845E 0.10 benign(0.009) TCGA-ER-A42L-06 7 4947218 4947218 C T MMD2 Missense_Mutation p.G208S 0.15 deleterious(0) probably_damaging(0.989) TCGA-ER-A42L-06 7 51095563 51095563 C T COBL Missense_Mutation p.G1077E 0.07 tolerated(0.47) benign(0.115) TCGA-ER-A42L-06 7 55233031 55233031 C T EGFR Missense_Mutation p.T594I 0.09 deleterious(0.01) benign(0.047) TCGA-ER-A42L-06 7 63529378 63529378 G A ZNF727 Missense_Mutation p.G38E 0.20 deleterious(0) benign(0.198) TCGA-ER-A42L-06 7 70880953 70880953 G A WBSCR17 Missense_Mutation p.R223K 0.07 deleterious(0.05) benign(0.272) TCGA-ER-A42L-06 7 71175763 71175763 G A WBSCR17 Silent p.K506K 0.08 TCGA-ER-A42L-06 7 72436459 72436459 G A TRIM74 Missense_Mutation p.A77V 0.11 deleterious(0.04) benign(0.02) TCGA-ER-A42L-06 7 72657979 72657979 G A GTF2IRD2P1 RNA 0.09 TCGA-ER-A42L-06 7 73634097 73634097 C T LAT2 Missense_Mutation p.T53M 0.04 tolerated(0.07) benign(0.021) TCGA-ER-A42L-06 7 75399049 75399049 T A CCL26 Nonsense_Mutation p.K83* 0.08 TCGA-ER-A42L-06 7 77975261 77975261 G A MAGI2 Silent p.P401P 0.06 TCGA-ER-A42L-06 7 86526854 86526854 C T KIAA1324L Missense_Mutation p.E885K 0.13 tolerated(0.64) benign(0.014) TCGA-ER-A42L-06 7 87031442 87031442 G A ABCB4 Silent p.V1277V 0.13 TCGA-ER-A42L-06 7 87912006 87912006 G A STEAP4 Missense_Mutation p.P312S 0.07 deleterious(0.02) probably_damaging(0.951) TCGA-ER-A42L-06 7 88956692 88956692 G A ZNF804B Missense_Mutation p.R95Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-ER-A42L-06 7 92019357 92019357 T C ANKIB1 Missense_Mutation p.L660P 0.11 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 7 92025742 92025742 C T ANKIB1 Silent p.L783L 0.31 TCGA-ER-A42L-06 7 92146608 92146608 G A PEX1 Silent p.L407L 0.20 TCGA-ER-A42L-06 7 93055703 93055703 G A CALCR Missense_Mutation p.P498S 0.04 tolerated(0.13) benign(0.015) TCGA-ER-A42L-06 7 94051253 94051253 C T COL1A2 Missense_Mutation p.P798S 0.08 unknown(0) TCGA-ER-A42L-06 7 94879518 94879518 G A PPP1R9A Missense_Mutation p.E783K 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 7 99630964 99630964 C T ZKSCAN1 Missense_Mutation p.S279L 0.24 tolerated(0.69) benign(0.179) TCGA-ER-A42L-06 7 99956643 99956643 G A PILRB Missense_Mutation p.R132Q 0.08 tolerated(0.71) benign(0.016) TCGA-ER-A42L-06 7 99956644 99956644 G A PILRB Silent p.R132R 0.08 TCGA-ER-A42L-06 8 101065094 101065094 G A RGS22 Missense_Mutation p.P542L 0.20 deleterious(0) probably_damaging(0.993) TCGA-ER-A42L-06 8 104427608 104427608 G A DCAF13 Silent p.G130G 0.08 TCGA-ER-A42L-06 8 10474094 10474094 C T RP1L1 Missense_Mutation p.D205N 0.16 probably_damaging(0.998) TCGA-ER-A42L-06 8 104897577 104897577 G A RIMS2 Silent p.R250R 0.21 TCGA-ER-A42L-06 8 105361650 105361650 G A DCSTAMP Silent p.R290R 0.13 TCGA-ER-A42L-06 8 106811068 106811068 G A ZFPM2 Missense_Mutation p.E286K 0.19 tolerated(0.18) benign(0.038) TCGA-ER-A42L-06 8 107722926 107722926 G A OXR1 Silent p.R568R 0.24 TCGA-ER-A42L-06 8 108348467 108348467 C T ANGPT1 Silent p.Q162Q 0.33 TCGA-ER-A42L-06 8 109215673 109215673 A T EIF3E Nonsense_Mutation p.L374* 0.17 TCGA-ER-A42L-06 8 110131375 110131375 C T TRHR Silent p.F296F 0.08 TCGA-ER-A42L-06 8 110457719 110457719 C T PKHD1L1 Missense_Mutation p.S1874F 0.25 tolerated(0.23) benign(0.049) TCGA-ER-A42L-06 8 110487357 110487357 T C PKHD1L1 Silent p.I2872I 0.14 TCGA-ER-A42L-06 8 110587950 110587950 G A SYBU Missense_Mutation p.P393S 0.05 tolerated(0.15) benign(0.005) TCGA-ER-A42L-06 8 113236841 113236841 G A CSMD3 3'UTR 0.17 TCGA-ER-A42L-06 8 114185963 114185963 G A CSMD3 Missense_Mutation p.P233S 0.19 deleterious(0) possibly_damaging(0.734) TCGA-ER-A42L-06 8 130761731 130761731 C T GSDMC Missense_Mutation p.M418I 0.10 deleterious(0.02) benign(0.153) TCGA-ER-A42L-06 8 130789735 130789735 T G GSDMC Missense_Mutation p.L33F 0.15 tolerated(1) benign(0.005) TCGA-ER-A42L-06 8 133053897 133053897 G A OC90 Silent p.F73F 0.25 TCGA-ER-A42L-06 8 13357349 13357349 T C DLC1 Missense_Mutation p.M78V 0.04 tolerated_low_confidence(0.08) benign(0.065) TCGA-ER-A42L-06 8 134237664 134237664 G A WISP1 Silent p.R214R 0.13 TCGA-ER-A42L-06 8 139149473 139149473 A G FAM135B Missense_Mutation p.V1311A 0.07 deleterious(0) possibly_damaging(0.859) TCGA-ER-A42L-06 8 140630446 140630446 G A KCNK9 3'UTR 0.22 TCGA-ER-A42L-06 8 140630866 140630866 C T KCNK9 Missense_Mutation p.E254K 0.11 deleterious(0.01) possibly_damaging(0.703) TCGA-ER-A42L-06 8 144999675 144999675 C T PLEC Silent p.E1611E 0.17 TCGA-ER-A42L-06 8 145268054 145268054 C T MROH1 Intron 0.16 TCGA-ER-A42L-06 8 145268055 145268055 C T MROH1 Intron 0.16 TCGA-ER-A42L-06 8 146067427 146067427 G A ZNF7 Missense_Mutation p.G312E 0.17 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 8 146107151 146107151 G A ZNF250 Missense_Mutation p.P478S 0.16 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 8 15998343 15998343 G A MSR1 Intron 0.09 TCGA-ER-A42L-06 8 24256953 24256953 C T ADAMDEC1 Missense_Mutation p.S326F 0.21 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 8 27457472 27457472 G A CLU Missense_Mutation p.S330F 0.19 deleterious(0) probably_damaging(0.975) TCGA-ER-A42L-06 8 2820113 2820113 C T CSMD1 Missense_Mutation p.G3168E 0.10 probably_damaging(1) TCGA-ER-A42L-06 8 29197691 29197691 G A DUSP4 Missense_Mutation p.P168L 0.24 tolerated(0.15) benign(0.004) TCGA-ER-A42L-06 8 2976071 2976071 G A CSMD1 Nonsense_Mutation p.Q2094* 0.06 TCGA-ER-A42L-06 8 35606077 35606077 G A UNC5D Missense_Mutation p.S600N 0.07 deleterious(0.01) benign(0.409) TCGA-ER-A42L-06 8 38386158 38386158 C T C8orf86 5'UTR 0.13 TCGA-ER-A42L-06 8 38839232 38839232 C T HTRA4 Missense_Mutation p.P354S 0.15 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 8 39564382 39564382 C T ADAM18 Missense_Mutation p.S659F 0.19 deleterious(0) probably_damaging(0.951) TCGA-ER-A42L-06 8 48508471 48508471 A G SPIDR Missense_Mutation p.E399G 0.17 tolerated(0.08) benign(0.087) TCGA-ER-A42L-06 8 52359645 52359645 C T PXDNL Missense_Mutation p.D482N 0.24 tolerated(0.08) possibly_damaging(0.721) TCGA-ER-A42L-06 8 53092782 53092782 C T ST18 Missense_Mutation p.M59I 0.11 deleterious(0.03) benign(0.134) TCGA-ER-A42L-06 8 54147522 54147522 G A OPRK1 Missense_Mutation p.S136F 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 8 55537400 55537400 G A RP1 Missense_Mutation p.E320K 0.22 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 8 59728227 59728227 C T TOX Silent p.S354S 0.07 TCGA-ER-A42L-06 8 72983961 72983961 C T TRPA1 Missense_Mutation p.D85N 0.11 tolerated(0.42) benign(0.007) TCGA-ER-A42L-06 8 73848207 73848207 C T KCNB2 Missense_Mutation p.S206F 0.13 deleterious(0) probably_damaging(0.996) TCGA-ER-A42L-06 8 8197066 8197066 C T SGK223 Missense_Mutation p.G748S 0.17 benign(0.093) TCGA-ER-A42L-06 8 8197067 8197067 C T SGK223 Silent p.R747R 0.16 TCGA-ER-A42L-06 8 86121519 86121519 C T E2F5 Missense_Mutation p.S253F 0.27 deleterious(0.02) benign(0.014) TCGA-ER-A42L-06 8 87060836 87060836 C T PSKH2 Missense_Mutation p.R338Q 0.23 tolerated(1) benign(0.001) TCGA-ER-A42L-06 8 87076824 87076824 G A PSKH2 Silent p.F74F 0.18 TCGA-ER-A42L-06 8 87588164 87588164 T C CNGB3 Silent p.E766E 0.08 TCGA-ER-A42L-06 8 88886083 88886083 G A DCAF4L2 Silent p.F39F 0.28 TCGA-ER-A42L-06 8 94934315 94934315 C T PDP1 Missense_Mutation p.P35S 0.15 deleterious_low_confidence(0.04) benign(0.173) TCGA-ER-A42L-06 8 95265325 95265325 C T GEM Missense_Mutation p.R116Q 0.14 tolerated(0.08) benign(0.103) TCGA-ER-A42L-06 9 101747907 101747907 C T COL15A1 Missense_Mutation p.S54F 0.15 deleterious(0) probably_damaging(0.976) TCGA-ER-A42L-06 9 104079689 104079689 C T LPPR1 Missense_Mutation p.P286S 0.18 tolerated(0.78) benign(0.001) TCGA-ER-A42L-06 9 107361685 107361685 C T OR13C5 Missense_Mutation p.E4K 0.07 tolerated(0.5) benign(0.002) TCGA-ER-A42L-06 9 115200801 115200801 C T HSDL2 Missense_Mutation p.S230F 0.08 tolerated(0.05) benign(0.072) TCGA-ER-A42L-06 9 116345889 116345889 G A RGS3 Missense_Mutation p.E733K 0.09 tolerated_low_confidence(0.1) benign(0.006) TCGA-ER-A42L-06 9 117168646 117168646 G A DFNB31 Missense_Mutation p.P742L 0.06 deleterious(0.03) probably_damaging(0.954) TCGA-ER-A42L-06 9 117822079 117822079 A G TNC Silent p.P1412P 0.09 TCGA-ER-A42L-06 9 117848355 117848355 C T TNC Missense_Mutation p.G552E 0.13 deleterious(0) probably_damaging(0.999) TCGA-ER-A42L-06 9 119625875 119625875 G A ASTN2 Missense_Mutation p.S625F 0.10 tolerated(0.12) unknown(0) TCGA-ER-A42L-06 9 120476176 120476176 C T TLR4 Silent p.F590F 0.15 TCGA-ER-A42L-06 9 124535245 124535245 C T DAB2IP Missense_Mutation p.S785F 0.09 tolerated(0.05) possibly_damaging(0.683) TCGA-ER-A42L-06 9 125145998 125145998 G A PTGS1 Missense_Mutation p.E325K 0.15 deleterious(0) probably_damaging(0.921) TCGA-ER-A42L-06 9 12704573 12704573 C A TYRP1 Missense_Mutation p.H377N 0.14 deleterious(0.01) probably_damaging(1) TCGA-ER-A42L-06 9 127118992 127118992 G A PSMB7 Intron 0.09 TCGA-ER-A42L-06 9 130149584 130149584 C T GARNL3 Missense_Mutation p.P834L 0.14 tolerated(0.07) benign(0.009) TCGA-ER-A42L-06 9 130507002 130507002 C T SH2D3C Silent p.V547V 0.14 TCGA-ER-A42L-06 9 140435109 140435109 G A PNPLA7 Silent p.I244I 0.21 TCGA-ER-A42L-06 9 140459359 140459359 G A DPH7 Silent p.I254I 0.20 TCGA-ER-A42L-06 9 140946615 140946615 C T CACNA1B Missense_Mutation p.T1261I 0.19 deleterious(0) probably_damaging(0.995) TCGA-ER-A42L-06 9 14740157 14740157 G A FREM1 Silent p.S2110S 0.16 TCGA-ER-A42L-06 9 23762053 23762053 C T ELAVL2 Silent p.G60G 0.11 TCGA-ER-A42L-06 9 27158127 27158127 G A TEK Silent p.K117K 0.07 TCGA-ER-A42L-06 9 37719072 37719072 C T FRMPD1 Missense_Mutation p.P139S 0.16 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 9 39171400 39171400 G A CNTNAP3 Silent p.F433F 0.16 TCGA-ER-A42L-06 9 43624950 43624950 T C SPATA31A6 Missense_Mutation p.H1246R 0.03 tolerated(0.19) benign(0.033) TCGA-ER-A42L-06 9 71849418 71849418 C T TJP2 Missense_Mutation p.P610S 0.08 deleterious(0.02) probably_damaging(0.954) TCGA-ER-A42L-06 9 71863177 71863177 C T TJP2 Intron 0.29 TCGA-ER-A42L-06 9 84564704 84564704 G A RP11-383M4.6 Intron 0.10 TCGA-ER-A42L-06 X 100182964 100182964 A G XKRX Silent p.V110V 0.16 TCGA-ER-A42L-06 X 105167252 105167252 G A NRK Missense_Mutation p.G919D 0.21 tolerated(0.07) benign(0.039) TCGA-ER-A42L-06 X 105277332 105277332 T C SERPINA7 3'UTR 0.31 TCGA-ER-A42L-06 X 105450968 105450968 C T MUM1L1 Missense_Mutation p.P515S 0.10 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 X 107911635 107911635 C T COL4A5 Missense_Mutation p.P1231S 0.15 unknown(0) TCGA-ER-A42L-06 X 107924162 107924162 G A COL4A5 Missense_Mutation p.E1355K 0.18 benign(0.327) TCGA-ER-A42L-06 X 110459748 110459748 G A PAK3 Missense_Mutation p.D539N 0.27 deleterious(0.04) possibly_damaging(0.641) TCGA-ER-A42L-06 X 130678233 130678233 C T OR13H1 Silent p.F62F 0.15 TCGA-ER-A42L-06 X 132351792 132351792 C T TFDP3 Missense_Mutation p.D166N 0.15 deleterious(0) benign(0.311) TCGA-ER-A42L-06 X 134483196 134483196 G A ZNF449 Silent p.L172L 0.16 TCGA-ER-A42L-06 X 135427354 135427354 G A GPR112 Missense_Mutation p.D497N 0.18 tolerated(0.07) benign(0.065) TCGA-ER-A42L-06 X 140993581 140993581 C T MAGEC1 Missense_Mutation p.P131S 0.15 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-ER-A42L-06 X 140993630 140993630 C T MAGEC1 Missense_Mutation p.S147F 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.485) TCGA-ER-A42L-06 X 150348631 150348631 C T GPR50 Silent p.I192I 0.14 TCGA-ER-A42L-06 X 150868507 150868507 G A PRRG3 Missense_Mutation p.R16Q 0.14 deleterious(0.04) benign(0.045) TCGA-ER-A42L-06 X 151092802 151092802 C T MAGEA4 Silent p.I222I 0.17 TCGA-ER-A42L-06 X 152845447 152845447 G A ATP2B3 Silent p.V1118V 0.15 TCGA-ER-A42L-06 X 153128221 153128221 G A L1CAM Missense_Mutation p.S1224L 0.09 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 X 17819691 17819691 G A RAI2 Missense_Mutation p.S147F 0.14 deleterious(0) probably_damaging(0.989) TCGA-ER-A42L-06 X 18192212 18192212 G A BEND2 Missense_Mutation p.A640V 0.15 tolerated(0.2) benign(0.012) TCGA-ER-A42L-06 X 23018472 23018472 G A DDX53 Missense_Mutation p.E100K 0.28 tolerated(0.49) benign(0.405) TCGA-ER-A42L-06 X 24197773 24197773 G A ZFX Missense_Mutation p.E178K 0.15 tolerated(0.07) probably_damaging(0.995) TCGA-ER-A42L-06 X 37026636 37026636 G A FAM47C Silent p.V51V 0.15 TCGA-ER-A42L-06 X 38019392 38019392 T C SRPX Missense_Mutation p.D278G 0.26 tolerated(0.1) possibly_damaging(0.547) TCGA-ER-A42L-06 X 41069763 41069763 C T USP9X Missense_Mutation p.L1673F 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-ER-A42L-06 X 47444666 47444666 C T TIMP1 Silent p.A88A 0.25 TCGA-ER-A42L-06 X 48688111 48688111 C T ERAS Missense_Mutation p.S193F 0.25 tolerated(0.47) benign(0.025) TCGA-ER-A42L-06 X 55028746 55028746 C T APEX2 Silent p.L102L 0.11 TCGA-ER-A42L-06 X 55783759 55783759 C T RRAGB Missense_Mutation p.S341F 0.14 deleterious(0.03) benign(0.197) TCGA-ER-A42L-06 X 73046480 73046480 C T XIST RNA 0.23 TCGA-ER-A42L-06 X 73963377 73963377 G A KIAA2022 Missense_Mutation p.P339S 0.28 deleterious(0) probably_damaging(1) TCGA-ER-A42L-06 X 73963728 73963728 T G KIAA2022 Missense_Mutation p.K222Q 0.20 deleterious(0) probably_damaging(0.982) TCGA-ER-A42L-06 X 78616621 78616621 C T ITM2A Missense_Mutation p.E253K 0.18 tolerated(1) benign(0.005) TCGA-ER-A42L-06 X 83128760 83128760 G A CYLC1 Silent p.K348K 0.20 TCGA-ER-A42L-06 X 84362877 84362877 C T SATL1 Silent p.T366T 0.13 TCGA-FR-A2OS-01 16 15826509 15826509 C T MYH11 Missense_Mutation p.R1195Q 0.42 benign(0.104) TCGA-FR-A2OS-01 16 4431310 4431310 C T VASN Silent p.F144F 0.40 TCGA-FR-A2OS-01 18 76755190 76755190 G A SALL3 Missense_Mutation p.G1067S 0.39 deleterious(0.01) benign(0.402) TCGA-FR-A2OS-01 19 35827206 35827206 A T CD22 Missense_Mutation p.K227M 0.42 deleterious(0.01) possibly_damaging(0.565) TCGA-FR-A2OS-01 21 41648146 41648146 A G DSCAM Missense_Mutation p.V745A 0.43 tolerated(0.11) benign(0.217) TCGA-FR-A2OS-01 22 43204776 43204776 A C ARFGAP3 Silent p.A439A 0.33 TCGA-FR-A2OS-01 22 45914606 45914606 C T FBLN1 Missense_Mutation p.R42W 0.49 deleterious(0) probably_damaging(0.965) TCGA-FR-A2OS-01 2 110905497 110905497 C T NPHP1 Missense_Mutation p.R478H 0.39 deleterious(0.03) benign(0.286) TCGA-FR-A2OS-01 2 166246020 166246020 C T SCN2A Missense_Mutation p.R1902C 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A2OS-01 4 100774447 100774447 T C DAPP1 Missense_Mutation p.V144A 0.24 deleterious(0) possibly_damaging(0.767) TCGA-FR-A2OS-01 4 146686225 146686225 A C ZNF827 Missense_Mutation p.C1049G 0.36 deleterious(0) probably_damaging(0.997) TCGA-FR-A2OS-01 5 140768251 140768251 C T PCDHGB4 Missense_Mutation p.T267M 0.41 deleterious(0.01) probably_damaging(0.943) TCGA-FR-A2OS-01 8 106801107 106801107 C A ZFPM2 Missense_Mutation p.Q232K 0.84 deleterious(0) benign(0.374) TCGA-FR-A2OS-01 X 118221921 118221921 G C KIAA1210 Missense_Mutation p.T1091S 0.41 tolerated(1) benign(0.012) TCGA-FR-A2OS-01 X 118783980 118783980 C T SEPT6 Missense_Mutation p.E204K 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A2OS-01 X 21674605 21674605 A G KLHL34 Silent p.G434G 0.31 TCGA-FR-A3R1-01 10 101656106 101656106 G A DNMBP Missense_Mutation p.S990F 0.29 deleterious(0) probably_damaging(0.997) TCGA-FR-A3R1-01 10 103912053 103912053 C T NOLC1 5'UTR 0.47 TCGA-FR-A3R1-01 10 104164796 104164796 C T PSD Missense_Mutation p.G805E 0.23 tolerated(0.71) possibly_damaging(0.906) TCGA-FR-A3R1-01 10 105945750 105945750 G A WDR96 Silent p.I664I 0.23 TCGA-FR-A3R1-01 10 118957028 118957028 G A KCNK18 Missense_Mutation p.R10K 0.26 tolerated(0.78) benign(0.006) TCGA-FR-A3R1-01 10 126089462 126089462 G A OAT Missense_Mutation p.T369I 0.35 tolerated(0.07) benign(0.376) TCGA-FR-A3R1-01 10 129536042 129536042 G A FOXI2 Missense_Mutation p.D169N 0.50 deleterious(0) probably_damaging(0.998) TCGA-FR-A3R1-01 10 15115166 15115166 G A OLAH Missense_Mutation p.E299K 0.27 deleterious(0.04) benign(0.14) TCGA-FR-A3R1-01 10 16975087 16975087 A C CUBN Missense_Mutation p.D2041E 0.23 deleterious(0) probably_damaging(0.968) TCGA-FR-A3R1-01 10 17157555 17157555 G A CUBN Missense_Mutation p.S212F 0.36 tolerated(0.76) benign(0.093) TCGA-FR-A3R1-01 10 25755598 25755598 C T GPR158 Missense_Mutation p.L452F 0.33 deleterious(0) probably_damaging(0.99) TCGA-FR-A3R1-01 10 3180438 3180438 G A PITRM1 Silent p.A1004A 0.34 TCGA-FR-A3R1-01 10 35858073 35858073 G A CCNY Missense_Mutation p.R334Q 0.42 tolerated(0.41) probably_damaging(0.996) TCGA-FR-A3R1-01 10 43601920 43601920 G A RET Missense_Mutation p.D322N 0.30 tolerated(0.13) probably_damaging(0.993) TCGA-FR-A3R1-01 10 47087991 47087991 G A NPY4R 3'UTR 0.17 TCGA-FR-A3R1-01 10 48370880 48370880 G A ZNF488 Silent p.Q116Q 0.33 TCGA-FR-A3R1-01 10 5040898 5040898 G A AKR1C2 Silent p.I163I 0.34 TCGA-FR-A3R1-01 10 61898843 61898843 C T ANK3 Missense_Mutation p.E873K 0.31 probably_damaging(0.913) TCGA-FR-A3R1-01 10 64136423 64136423 C T ZNF365 Silent p.F157F 0.32 TCGA-FR-A3R1-01 10 6539007 6539007 C T PRKCQ Missense_Mutation p.R217Q 0.41 tolerated(0.21) benign(0.097) TCGA-FR-A3R1-01 10 67680104 67680104 C T CTNNA3 Missense_Mutation p.G891E 0.27 tolerated(0.1) unknown(0) TCGA-FR-A3R1-01 10 69299374 69299374 G A CTNNA3 Missense_Mutation p.P116S 0.38 tolerated(0.75) possibly_damaging(0.876) TCGA-FR-A3R1-01 10 71697450 71697450 C A COL13A1 Missense_Mutation p.D608E 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-FR-A3R1-01 10 71697451 71697451 C T COL13A1 Missense_Mutation p.R609C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 10 75038070 75038070 T A TTC18 Silent p.L825L 0.28 TCGA-FR-A3R1-01 10 76797702 76797702 C T DUPD1 Silent p.P185P 0.33 TCGA-FR-A3R1-01 10 79769642 79769642 G A POLR3A Missense_Mutation p.P584S 0.37 deleterious(0) probably_damaging(0.991) TCGA-FR-A3R1-01 10 80968129 80968129 A T ZMIZ1 Missense_Mutation p.T33S 0.20 probably_damaging(0.952) TCGA-FR-A3R1-01 10 80968130 80968130 C T ZMIZ1 Missense_Mutation p.T33M 0.21 probably_damaging(0.993) TCGA-FR-A3R1-01 10 81680759 81680759 G A MBL1P RNA 0.23 TCGA-FR-A3R1-01 10 96493188 96493188 C T CYP2C18 Silent p.F428F 0.28 TCGA-FR-A3R1-01 10 98088483 98088483 G A DNTT Missense_Mutation p.G337S 0.29 deleterious(0.02) benign(0.431) TCGA-FR-A3R1-01 11 113103514 113103514 G A NCAM1 Silent p.L549L 0.59 TCGA-FR-A3R1-01 11 113661236 113661236 G A ATF4P4 RNA 0.58 TCGA-FR-A3R1-01 11 118235847 118235847 C T UBE4A Missense_Mutation p.L18F 0.62 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 11 17547909 17547909 C T USH1C Missense_Mutation p.R220Q 0.20 tolerated(0.15) benign(0.201) TCGA-FR-A3R1-01 11 30946900 30946900 C T DCDC1 Missense_Mutation p.G985R 0.39 deleterious(0) probably_damaging(0.979) TCGA-FR-A3R1-01 11 36293216 36293216 C A COMMD9 3'Flank 0.14 TCGA-FR-A3R1-01 11 36293231 36293231 A C COMMD9 3'Flank 0.17 TCGA-FR-A3R1-01 11 40137212 40137212 C T LRRC4C Missense_Mutation p.E211K 0.23 tolerated(0.08) benign(0.021) TCGA-FR-A3R1-01 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.48 tolerated(0.12) probably_damaging(0.988) TCGA-FR-A3R1-01 11 4566782 4566782 C T OR52M1 Missense_Mutation p.A121V 0.51 deleterious(0.01) probably_damaging(0.912) TCGA-FR-A3R1-01 11 4673818 4673818 C T OR51E1 Missense_Mutation p.P21L 0.19 deleterious(0.01) probably_damaging(1) TCGA-FR-A3R1-01 11 48266817 48266817 C T OR4X2 Silent p.F54F 0.25 TCGA-FR-A3R1-01 11 4945475 4945475 G A OR51G1 Missense_Mutation p.P32L 0.33 tolerated(0.1) benign(0.163) TCGA-FR-A3R1-01 11 49598157 49598157 G T RP11-707M1.1 RNA 0.27 TCGA-FR-A3R1-01 11 49974067 49974067 C T OR4C13 Silent p.V31V 0.50 TCGA-FR-A3R1-01 11 5221246 5221246 G A OR51V1 Silent p.L229L 0.58 TCGA-FR-A3R1-01 11 5537395 5537395 C T UBQLNL Missense_Mutation p.G93S 0.30 deleterious(0.02) possibly_damaging(0.733) TCGA-FR-A3R1-01 11 55433345 55433345 C T OR4C6 Missense_Mutation p.L235F 0.35 tolerated_low_confidence(0.05) benign(0.311) TCGA-FR-A3R1-01 11 55578989 55578989 G A OR5L1 Missense_Mutation p.G16E 0.36 deleterious(0) probably_damaging(0.931) TCGA-FR-A3R1-01 11 55861147 55861147 C T OR8I2 Missense_Mutation p.R122C 0.34 deleterious(0.01) possibly_damaging(0.908) TCGA-FR-A3R1-01 11 57087839 57087839 G A TNKS1BP1 Missense_Mutation p.P148S 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 11 57971321 57971321 G A OR1S2 Silent p.I111I 0.29 TCGA-FR-A3R1-01 11 58206953 58206953 C T OR5B12 Missense_Mutation p.M224I 0.27 deleterious_low_confidence(0.01) benign(0.001) TCGA-FR-A3R1-01 11 59245135 59245135 T G OR4D10 Missense_Mutation p.V78G 0.33 deleterious(0.01) benign(0.001) TCGA-FR-A3R1-01 11 61511316 61511316 C T DAGLA Silent p.P828P 0.29 TCGA-FR-A3R1-01 11 62744846 62744846 C T SLC22A6 Missense_Mutation p.G459R 0.30 deleterious(0) probably_damaging(0.987) TCGA-FR-A3R1-01 11 64056633 64056633 C T GPR137 Silent p.A408A 0.25 TCGA-FR-A3R1-01 11 67399810 67399810 C T TBX10 Missense_Mutation p.G283S 0.35 deleterious(0.04) benign(0.031) TCGA-FR-A3R1-01 11 6866924 6866924 G A OR10A5 Missense_Mutation p.G4E 0.23 tolerated(0.32) benign(0.004) TCGA-FR-A3R1-01 11 6913306 6913306 G A OR2D2 Silent p.V142V 0.50 TCGA-FR-A3R1-01 11 72423537 72423537 C T ARAP1 Missense_Mutation p.G275E 0.35 tolerated(0.54) benign(0.03) TCGA-FR-A3R1-01 11 74085522 74085522 G A PGM2L1 Missense_Mutation p.R73C 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3R1-01 11 76261047 76261047 G A C11orf30 Missense_Mutation p.E1276K 0.44 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-FR-A3R1-01 11 902240 902240 G A CHID1 Missense_Mutation p.R143C 0.22 deleterious(0.04) possibly_damaging(0.666) TCGA-FR-A3R1-01 11 92086775 92086775 G A FAT3 Silent p.K499K 0.71 TCGA-FR-A3R1-01 11 92592402 92592402 G A FAT3 Missense_Mutation p.D3858N 0.42 benign(0.003) TCGA-FR-A3R1-01 11 93127684 93127684 G A CCDC67 Silent p.R367R 0.43 TCGA-FR-A3R1-01 12 112926248 112926248 G A PTPN11 Missense_Mutation p.A461T 0.66 deleterious(0.01) probably_damaging(0.988) TCGA-FR-A3R1-01 12 113810537 113810537 G - PLBD2 Frame_Shift_Del p.S157Afs*7 0.51 TCGA-FR-A3R1-01 12 118199316 118199316 G A KSR2 Silent p.S162S 0.74 TCGA-FR-A3R1-01 12 122217571 122217571 G A RHOF Intron 0.69 TCGA-FR-A3R1-01 12 123200983 123200983 C T HCAR3 Missense_Mutation p.R101Q 0.69 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 12 124315246 124315246 G A DNAH10 Silent p.K1397K 0.76 TCGA-FR-A3R1-01 12 129559080 129559080 G A TMEM132D Silent p.T880T 0.65 TCGA-FR-A3R1-01 12 13724870 13724870 G A GRIN2B Missense_Mutation p.P680L 0.36 deleterious(0) possibly_damaging(0.699) TCGA-FR-A3R1-01 12 13764735 13764735 G A GRIN2B Silent p.I568I 0.32 TCGA-FR-A3R1-01 12 14019093 14019093 G A GRIN2B Missense_Mutation p.A17V 0.33 tolerated(0.93) benign(0) TCGA-FR-A3R1-01 12 18524227 18524227 T A PIK3C2G Missense_Mutation p.L580H 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-FR-A3R1-01 12 21472487 21472487 G A SLCO1A2 Intron 0.22 TCGA-FR-A3R1-01 12 247586 247586 C T IQSEC3 Silent p.L353L 0.32 TCGA-FR-A3R1-01 12 306029 306029 G A SLC6A12 Silent p.I365I 0.31 TCGA-FR-A3R1-01 12 32975413 32975413 C T PKP2 Silent p.R653R 0.34 TCGA-FR-A3R1-01 12 48723366 48723366 G A H1FNT Missense_Mutation p.E98K 0.37 tolerated(0.11) benign(0.003) TCGA-FR-A3R1-01 12 48962322 48962322 C T LALBA Missense_Mutation p.D116N 0.22 deleterious(0.01) benign(0.038) TCGA-FR-A3R1-01 12 49360170 49360170 C T WNT10B Missense_Mutation p.G293E 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 12 49442984 49442984 G A KMT2D Silent p.F1308F 0.16 TCGA-FR-A3R1-01 12 57484943 57484943 T C NAB2 Missense_Mutation p.L40P 0.33 deleterious(0) possibly_damaging(0.475) TCGA-FR-A3R1-01 12 57921001 57921002 - C MBD6 Frame_Shift_Ins p.Q694Pfs*23 0.43 TCGA-FR-A3R1-01 12 58335513 58335513 G A XRCC6BP1 Missense_Mutation p.R10Q 0.29 tolerated(0.6) benign(0) TCGA-FR-A3R1-01 12 70953088 70953088 C T PTPRB Intron 0.71 TCGA-FR-A3R1-01 12 7651553 7651553 C T CD163 Missense_Mutation p.G230E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 12 80726795 80726795 G A OTOGL Missense_Mutation p.M1444I 0.77 tolerated(0.43) benign(0.002) TCGA-FR-A3R1-01 12 89916703 89916703 G A GALNT4 Missense_Mutation p.P542S 0.72 tolerated(0.41) benign(0.284) TCGA-FR-A3R1-01 12 9316310 9316310 G A PZP Missense_Mutation p.P897L 0.33 tolerated(0.06) benign(0.444) TCGA-FR-A3R1-01 13 114322182 114322182 C T GRK1 Missense_Mutation p.P161S 0.22 deleterious(0.02) benign(0.105) TCGA-FR-A3R1-01 13 24895366 24895366 G A C1QTNF9 Missense_Mutation p.M154I 0.64 tolerated(0.3) benign(0.002) TCGA-FR-A3R1-01 13 24895367 24895367 G A AL359736.1 Missense_Mutation p.P67L 0.64 deleterious(0) unknown(0) TCGA-FR-A3R1-01 13 29001417 29001417 G A FLT1 Missense_Mutation p.P439S 0.33 tolerated(0.2) benign(0.259) TCGA-FR-A3R1-01 13 92560207 92560207 G A GPC5 Missense_Mutation p.V433I 0.33 deleterious(0.04) possibly_damaging(0.595) TCGA-FR-A3R1-01 14 100157455 100157455 G A CYP46A1 Missense_Mutation p.D53N 0.34 tolerated(0.5) benign(0.026) TCGA-FR-A3R1-01 14 102498652 102498652 C T DYNC1H1 Silent p.S3309S 0.32 TCGA-FR-A3R1-01 14 105396430 105396430 G A PLD4 Silent p.R235R 0.33 TCGA-FR-A3R1-01 14 106320606 106320606 C T IGHM Missense_Mutation p.E402K 0.34 deleterious(0.04) probably_damaging(0.936) TCGA-FR-A3R1-01 14 106321157 106321157 G A IGHM Missense_Mutation p.P278S 0.40 tolerated(0.45) benign(0.167) TCGA-FR-A3R1-01 14 106757686 106757686 G A IGHV2-26 Silent p.D107D 0.32 TCGA-FR-A3R1-01 14 20585719 20585719 C T OR4K17 Nonsense_Mutation p.Q52* 0.31 TCGA-FR-A3R1-01 14 20586468 20586468 C T OR4K17 Silent p.F301F 0.31 TCGA-FR-A3R1-01 14 21424357 21424357 C T RNASE2 Nonsense_Mutation p.Q143* 0.37 TCGA-FR-A3R1-01 14 22237271 22237271 C T TRAV6 Silent p.I116I 0.34 TCGA-FR-A3R1-01 14 22471689 22471689 C T TRAV18 Silent p.L38L 0.36 TCGA-FR-A3R1-01 14 23851666 23851666 G A MYH6 Nonsense_Mutation p.R1923* 0.34 TCGA-FR-A3R1-01 14 24108050 24108050 G T DHRS2 5'UTR 0.34 TCGA-FR-A3R1-01 14 24779948 24779948 C T LTB4R2 Silent p.F26F 0.33 TCGA-FR-A3R1-01 14 39722043 39722043 A G MIA2 Silent p.K553K 0.32 TCGA-FR-A3R1-01 14 47120657 47120657 G A RPL10L Missense_Mutation p.H95Y 0.25 deleterious(0.01) possibly_damaging(0.61) TCGA-FR-A3R1-01 14 52735302 52735302 C T PTGDR Missense_Mutation p.P257L 0.37 tolerated(0.68) benign(0.424) TCGA-FR-A3R1-01 14 53331516 53331516 G A FERMT2 Silent p.L443L 0.36 TCGA-FR-A3R1-01 14 63174889 63174889 C T KCNH5 Silent p.V768V 0.28 TCGA-FR-A3R1-01 14 67864416 67864416 G A PLEK2 Missense_Mutation p.T57I 0.32 deleterious(0.02) benign(0.166) TCGA-FR-A3R1-01 14 69695553 69695553 C T EXD2 Silent p.A118A 0.47 TCGA-FR-A3R1-01 14 71199970 71199970 C T MAP3K9 Missense_Mutation p.G720R 0.25 tolerated(0.05) benign(0.299) TCGA-FR-A3R1-01 14 74825297 74825297 C T VRTN Missense_Mutation p.S604F 0.39 tolerated(0.18) possibly_damaging(0.549) TCGA-FR-A3R1-01 14 74876505 74876505 C T SYNDIG1L Splice_Site 0.29 TCGA-FR-A3R1-01 14 76949074 76949074 C T ESRRB Silent p.V253V 0.29 TCGA-FR-A3R1-01 14 94845784 94845784 C T SERPINA1 Intron 0.29 TCGA-FR-A3R1-01 15 102359053 102359053 C T OR4F15 Silent p.L222L 0.33 TCGA-FR-A3R1-01 15 22332540 22332540 G A RP11-69H14.6 RNA 0.11 TCGA-FR-A3R1-01 15 41102083 41102083 C T ZFYVE19 Silent p.P162P 0.28 TCGA-FR-A3R1-01 15 42681288 42681288 C T CAPN3 Silent p.S265S 0.35 TCGA-FR-A3R1-01 15 43888750 43888750 G A CKMT1B Intron 0.39 TCGA-FR-A3R1-01 15 48703495 48703495 G A FBN1 Missense_Mutation p.H2770Y 0.34 benign(0.033) TCGA-FR-A3R1-01 15 51780227 51780227 G A DMXL2 Missense_Mutation p.S1714F 0.32 deleterious(0) possibly_damaging(0.843) TCGA-FR-A3R1-01 15 66273119 66273119 C T MEGF11 Nonsense_Mutation p.W253* 0.22 TCGA-FR-A3R1-01 15 66819689 66819689 C T ZWILCH Missense_Mutation p.S294F 0.27 deleterious(0) probably_damaging(0.989) TCGA-FR-A3R1-01 15 72455638 72455638 C T GRAMD2 Missense_Mutation p.D309N 0.35 tolerated(0.07) benign(0.242) TCGA-FR-A3R1-01 15 91290632 91290632 G T BLM Missense_Mutation p.V4F 0.25 deleterious(0) possibly_damaging(0.646) TCGA-FR-A3R1-01 15 91290720 91290720 C T BLM Missense_Mutation p.S33L 0.31 tolerated(0.18) benign(0.004) TCGA-FR-A3R1-01 16 11782225 11782225 G T TXNDC11 Missense_Mutation p.F659L 0.32 tolerated(0.52) benign(0.008) TCGA-FR-A3R1-01 16 1396942 1396942 C T BAIAP3 Missense_Mutation p.H948Y 0.34 tolerated(0.43) possibly_damaging(0.723) TCGA-FR-A3R1-01 16 1616272 1616272 G A IFT140 Silent p.S597S 0.36 TCGA-FR-A3R1-01 16 1815985 1815985 C T MAPK8IP3 Missense_Mutation p.P823L 0.35 deleterious(0.05) benign(0.013) TCGA-FR-A3R1-01 16 19184726 19184726 C T SYT17 Intron 0.39 TCGA-FR-A3R1-01 16 20497986 20497986 G A ACSM2A Missense_Mutation p.A574T 0.36 tolerated(0.19) benign(0.012) TCGA-FR-A3R1-01 16 20673164 20673164 C A ACSM1 Missense_Mutation p.W315L 0.32 tolerated(0.25) benign(0) TCGA-FR-A3R1-01 16 25189495 25189495 C T LCMT1 3'UTR 0.20 TCGA-FR-A3R1-01 16 30133239 30133239 G A MAPK3 Missense_Mutation p.R87W 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 16 30486859 30486859 G A ITGAL Silent p.L95L 0.28 TCGA-FR-A3R1-01 16 30486860 30486860 G A ITGAL Missense_Mutation p.G96R 0.27 deleterious(0) probably_damaging(0.994) TCGA-FR-A3R1-01 16 3119130 3119130 C T IL32 Missense_Mutation p.A114V 0.24 tolerated(0.32) possibly_damaging(0.763) TCGA-FR-A3R1-01 16 31434771 31434771 C T ITGAD Silent p.A986A 0.32 TCGA-FR-A3R1-01 16 57600568 57600568 G A GPR114 Missense_Mutation p.G202R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 16 58757768 58757768 G A GOT2 Missense_Mutation p.P43L 0.32 deleterious(0.01) benign(0.362) TCGA-FR-A3R1-01 16 67694231 67694231 G A ACD Missense_Mutation p.L51F 0.37 tolerated_low_confidence(0.07) benign(0.047) TCGA-FR-A3R1-01 16 69008046 69008046 C T TANGO6 Silent p.V939V 0.26 TCGA-FR-A3R1-01 16 69143610 69143610 C T HAS3 Silent p.C104C 0.39 TCGA-FR-A3R1-01 16 727788 727788 C A RHBDL1 Silent p.S351S 0.36 TCGA-FR-A3R1-01 16 7760870 7760870 A T RBFOX1 3'UTR 0.36 TCGA-FR-A3R1-01 16 82033512 82033512 C T SDR42E1 Missense_Mutation p.G129E 0.41 deleterious(0) probably_damaging(0.982) TCGA-FR-A3R1-01 16 83520203 83520203 C T CDH13 Silent p.I348I 0.41 TCGA-FR-A3R1-01 16 849106 849106 C T GNG13 5'UTR 0.36 TCGA-FR-A3R1-01 16 85712251 85712251 C T GINS2 Silent p.K109K 0.38 TCGA-FR-A3R1-01 17 10312862 10312862 G A MYH8 Missense_Mutation p.P544L 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A3R1-01 17 10351982 10351982 G A MYH4 Missense_Mutation p.S1495F 0.35 deleterious(0.02) possibly_damaging(0.739) TCGA-FR-A3R1-01 17 1340006 1340006 G A CRK Missense_Mutation p.P229S 0.27 tolerated(0.09) benign(0.005) TCGA-FR-A3R1-01 17 1370616 1370616 G A MYO1C Missense_Mutation p.P1029S 0.06 tolerated(0.64) benign(0.032) TCGA-FR-A3R1-01 17 1554068 1554068 G A PRPF8 3'UTR 0.36 TCGA-FR-A3R1-01 17 18539019 18539019 G A TBC1D28 3'UTR 0.12 TCGA-FR-A3R1-01 17 21319170 21319170 C T KCNJ12 Silent p.I172I 0.08 TCGA-FR-A3R1-01 17 2601341 2601341 G T CLUH Missense_Mutation p.L566M 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 17 28890464 28890464 G A TBC1D29 3'UTR 0.25 TCGA-FR-A3R1-01 17 2901590 2901590 G A RAP1GAP2 Missense_Mutation p.D374N 0.38 deleterious(0.01) possibly_damaging(0.812) TCGA-FR-A3R1-01 17 29509639 29509639 C T NF1 Nonsense_Mutation p.Q282* 0.24 TCGA-FR-A3R1-01 17 29559101 29559101 C T NF1 Nonsense_Mutation p.Q1070* 0.25 TCGA-FR-A3R1-01 17 30302590 30302590 C T SUZ12 Silent p.F227F 0.39 TCGA-FR-A3R1-01 17 37226133 37226133 G A PLXDC1 Silent p.S453S 0.24 TCGA-FR-A3R1-01 17 37369299 37369299 T C STAC2 Silent p.Q360Q 0.30 TCGA-FR-A3R1-01 17 39036423 39036423 C T KRT20 Missense_Mutation p.E241K 0.40 deleterious(0.04) possibly_damaging(0.896) TCGA-FR-A3R1-01 17 39240565 39240565 G A KRTAP4-7 Missense_Mutation p.R36K 0.33 deleterious(0.04) unknown(0) TCGA-FR-A3R1-01 17 39633452 39633452 G A KRT35 Silent p.L408L 0.30 TCGA-FR-A3R1-01 17 39675003 39675003 C T KRT15 Missense_Mutation p.G26E 0.41 deleterious(0.04) unknown(0) TCGA-FR-A3R1-01 17 39768440 39768440 G A KRT16 Silent p.Y167Y 0.32 TCGA-FR-A3R1-01 17 41939197 41939197 C T CD300LG Missense_Mutation p.A306V 0.20 tolerated(0.21) benign(0.079) TCGA-FR-A3R1-01 17 43908304 43908304 G A CRHR1 Silent p.E285E 0.30 TCGA-FR-A3R1-01 17 4439702 4439702 C T SPNS2 Missense_Mutation p.R530C 0.33 deleterious(0.03) benign(0.018) TCGA-FR-A3R1-01 17 49731062 49731062 C T CA10 Silent p.T167T 0.29 TCGA-FR-A3R1-01 17 5009214 5009214 G A ZNF232 Missense_Mutation p.P414S 0.32 deleterious(0.03) possibly_damaging(0.511) TCGA-FR-A3R1-01 17 58234039 58234039 G A CA4 Silent p.K77K 0.36 TCGA-FR-A3R1-01 17 62265793 62265793 G A TEX2 Missense_Mutation p.P727L 0.35 tolerated(0.32) benign(0) TCGA-FR-A3R1-01 17 6683763 6683763 G A FBXO39 Silent p.E192E 0.38 TCGA-FR-A3R1-01 17 71281714 71281714 G A CDC42EP4 Missense_Mutation p.S309F 0.37 deleterious(0) probably_damaging(0.997) TCGA-FR-A3R1-01 17 71382004 71382004 G A SDK2 Silent p.S1517S 0.17 TCGA-FR-A3R1-01 17 72610074 72610074 G A CD300E Nonsense_Mutation p.Q163* 0.42 TCGA-FR-A3R1-01 17 73487159 73487159 C T KIAA0195 Silent p.F386F 0.38 TCGA-FR-A3R1-01 17 7646249 7646249 C T DNAH2 Missense_Mutation p.L565F 0.39 probably_damaging(0.995) TCGA-FR-A3R1-01 17 78196546 78196546 C T SLC26A11 Silent p.S109S 0.33 TCGA-FR-A3R1-01 18 21526111 21526111 G A LAMA3 Missense_Mutation p.V3072M 0.24 benign(0.189) TCGA-FR-A3R1-01 18 29102145 29102145 C T DSG2 Missense_Mutation p.P208L 0.29 tolerated(0.11) benign(0.075) TCGA-FR-A3R1-01 18 30260276 30260276 C T KLHL14 Missense_Mutation p.G482R 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3R1-01 18 334816 334816 C T COLEC12 Missense_Mutation p.G581D 0.44 deleterious(0.04) unknown(0) TCGA-FR-A3R1-01 18 46385776 46385776 C T CTIF Missense_Mutation p.A550V 0.30 tolerated(0.07) possibly_damaging(0.541) TCGA-FR-A3R1-01 18 52609991 52609991 G A CCDC68 Missense_Mutation p.P11L 0.30 tolerated(0.32) benign(0.009) TCGA-FR-A3R1-01 18 52609992 52609992 G A CCDC68 Missense_Mutation p.P11S 0.31 tolerated(0.52) benign(0.026) TCGA-FR-A3R1-01 18 54281811 54281811 A G TXNL1 Silent p.Y193Y 0.32 TCGA-FR-A3R1-01 18 56148945 56148945 G A ALPK2 3'UTR 0.33 TCGA-FR-A3R1-01 18 59483148 59483148 G A RNF152 Silent p.L183L 0.36 TCGA-FR-A3R1-01 18 60241715 60241715 C T ZCCHC2 Missense_Mutation p.P801S 0.35 tolerated(0.1) benign(0.219) TCGA-FR-A3R1-01 18 61264304 61264304 G A SERPINB13 Missense_Mutation p.D295N 0.34 tolerated(0.16) benign(0.099) TCGA-FR-A3R1-01 18 61304954 61304954 T C SERPINB4 Nonstop_Mutation p.*391Wext*9 0.39 TCGA-FR-A3R1-01 18 61309021 61309021 G A SERPINB4 Silent p.F108F 0.33 TCGA-FR-A3R1-01 18 67871439 67871439 G A RTTN Missense_Mutation p.R94W 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 18 6959439 6959439 G A LAMA1 Missense_Mutation p.P2560L 0.34 tolerated(0.18) benign(0.004) TCGA-FR-A3R1-01 18 72999452 72999452 C T TSHZ1 Missense_Mutation p.A652V 0.29 tolerated(0.24) benign(0.001) TCGA-FR-A3R1-01 19 10071135 10071135 C T COL5A3 Silent p.T1730T 0.28 TCGA-FR-A3R1-01 19 10107320 10107320 C T COL5A3 Missense_Mutation p.G437S 0.27 unknown(0) TCGA-FR-A3R1-01 19 12979494 12979494 G A MAST1 Silent p.S868S 0.32 TCGA-FR-A3R1-01 19 13394186 13394186 G A CACNA1A Silent p.I1239I 0.33 TCGA-FR-A3R1-01 19 15989577 15989577 G A CYP4F2 3'UTR 0.28 TCGA-FR-A3R1-01 19 16032855 16032855 C T CYP4F11 Silent p.E369E 0.28 TCGA-FR-A3R1-01 19 18197736 18197736 G A IL12RB1 5'UTR 0.64 TCGA-FR-A3R1-01 19 36109349 36109349 C T HAUS5 Silent p.S289S 0.36 TCGA-FR-A3R1-01 19 38591829 38591829 G A SIPA1L3 Silent p.K664K 0.36 TCGA-FR-A3R1-01 19 39961117 39961117 C T SUPT5H Missense_Mutation p.P544L 0.32 deleterious(0.02) possibly_damaging(0.735) TCGA-FR-A3R1-01 19 40357546 40357546 G A FCGBP Missense_Mutation p.P5256L 0.22 possibly_damaging(0.9) TCGA-FR-A3R1-01 19 40367782 40367782 G A FCGBP Missense_Mutation p.A4393V 0.32 possibly_damaging(0.65) TCGA-FR-A3R1-01 19 41709394 41709394 G A CYP2S1 Missense_Mutation p.G339D 0.12 tolerated(0.36) benign(0.022) TCGA-FR-A3R1-01 19 42752805 42752805 G A ERF Missense_Mutation p.R487C 0.35 deleterious(0) possibly_damaging(0.876) TCGA-FR-A3R1-01 19 43259348 43259348 G A PSG8 Silent p.F260F 0.32 TCGA-FR-A3R1-01 19 43411155 43411155 G A PSG6 Missense_Mutation p.H387Y 0.33 tolerated(0.08) benign(0.268) TCGA-FR-A3R1-01 19 43965924 43965924 G A LYPD3 Missense_Mutation p.P207L 0.38 deleterious(0) probably_damaging(0.98) TCGA-FR-A3R1-01 19 49564946 49564946 C T NTF4 Nonsense_Mutation p.W103* 0.34 TCGA-FR-A3R1-01 19 49651415 49651415 C T PPFIA3 Missense_Mutation p.R971C 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A3R1-01 19 50335387 50335387 C T MED25 Silent p.I449I 0.35 TCGA-FR-A3R1-01 19 51506227 51506227 G A KLK9 3'UTR 0.41 TCGA-FR-A3R1-01 19 51742900 51742900 C T CD33 Missense_Mutation p.S351F 0.24 tolerated(0.07) possibly_damaging(0.592) TCGA-FR-A3R1-01 19 51742901 51742901 C T CD33 Silent p.S351S 0.26 TCGA-FR-A3R1-01 19 52469210 52469210 G A ZNF350 Missense_Mutation p.H166Y 0.29 tolerated(0.11) benign(0.001) TCGA-FR-A3R1-01 19 52497581 52497581 G A ZNF615 Missense_Mutation p.H261Y 0.29 deleterious(0) probably_damaging(0.912) TCGA-FR-A3R1-01 19 53678753 53678753 C A ZNF665 Missense_Mutation p.Q29H 0.32 deleterious(0) probably_damaging(0.924) TCGA-FR-A3R1-01 19 53747113 53747113 G A ZNF677 Missense_Mutation p.S18F 0.25 deleterious(0) probably_damaging(0.966) TCGA-FR-A3R1-01 19 54756800 54756800 G A LILRB5 Silent p.L470L 0.29 TCGA-FR-A3R1-01 19 55221397 55221397 G A AC098784.2 3'Flank 0.43 TCGA-FR-A3R1-01 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.37 deleterious(0.03) benign(0.227) TCGA-FR-A3R1-01 19 56363518 56363518 G A NLRP4 Silent p.R24R 0.32 TCGA-FR-A3R1-01 19 6669885 6669885 C T TNFSF14 Missense_Mutation p.G66R 0.42 tolerated(0.28) benign(0.01) TCGA-FR-A3R1-01 19 6710663 6710663 G A C3 Missense_Mutation p.S558F 0.42 deleterious(0) probably_damaging(0.912) TCGA-FR-A3R1-01 19 6924748 6924748 C T EMR1 Silent p.L617L 0.37 TCGA-FR-A3R1-01 19 9072321 9072321 G A MUC16 Missense_Mutation p.S5042F 0.26 unknown(0) TCGA-FR-A3R1-01 19 9083313 9083313 C T MUC16 Silent p.T2834T 0.33 TCGA-FR-A3R1-01 1 110741205 110741205 C T SLC6A17 3'UTR 0.52 TCGA-FR-A3R1-01 1 11087300 11087300 C T MASP2 Missense_Mutation p.G568E 0.33 deleterious(0.04) probably_damaging(1) TCGA-FR-A3R1-01 1 115829023 115829023 C T NGF Missense_Mutation p.E132K 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 1 115829096 115829096 G A NGF Silent p.V107V 0.31 TCGA-FR-A3R1-01 1 1168240 1168241 - A B3GALT6 Frame_Shift_Ins p.G195Rfs*248 0.40 TCGA-FR-A3R1-01 1 1168241 1168241 G A B3GALT6 Missense_Mutation p.G195R 0.41 tolerated(0.54) benign(0.01) TCGA-FR-A3R1-01 1 118486082 118486082 C T WDR3 Silent p.N387N 0.31 TCGA-FR-A3R1-01 1 12089857 12089857 C T MIIP Missense_Mutation p.P251S 0.29 tolerated(0.11) benign(0.438) TCGA-FR-A3R1-01 1 145438684 145438684 C T TXNIP 5'UTR 0.35 TCGA-FR-A3R1-01 1 151105670 151105670 G A SEMA6C Silent p.L727L 0.19 TCGA-FR-A3R1-01 1 153005005 153005005 C T SPRR1B Missense_Mutation p.P62S 0.31 deleterious(0) probably_damaging(0.998) TCGA-FR-A3R1-01 1 153643478 153643478 C A ILF2 5'UTR 0.34 TCGA-FR-A3R1-01 1 154794589 154794589 G A KCNN3 Silent p.I335I 0.24 TCGA-FR-A3R1-01 1 156917706 156917706 G A ARHGEF11 Silent p.L732L 0.26 TCGA-FR-A3R1-01 1 158585110 158585110 G A SPTA1 Silent p.I2228I 0.32 TCGA-FR-A3R1-01 1 159900109 159900109 G A IGSF9 Missense_Mutation p.P645L 0.29 tolerated(0.08) possibly_damaging(0.557) TCGA-FR-A3R1-01 1 16374522 16374522 C T CLCNKB Missense_Mutation p.L161F 0.34 deleterious(0) possibly_damaging(0.493) TCGA-FR-A3R1-01 1 167791305 167791305 G A ADCY10 Missense_Mutation p.H1415Y 0.33 deleterious(0) benign(0.136) TCGA-FR-A3R1-01 1 17085361 17085361 C T MST1L RNA 0.08 TCGA-FR-A3R1-01 1 171759716 171759716 C T METTL13 Silent p.I478I 0.32 TCGA-FR-A3R1-01 1 172001604 172001604 G A DNM3 Missense_Mutation p.D218N 0.27 deleterious(0.01) benign(0.037) TCGA-FR-A3R1-01 1 176708828 176708828 C T PAPPA2 Missense_Mutation p.P1289S 0.33 tolerated(0.43) benign(0.007) TCGA-FR-A3R1-01 1 176709333 176709333 G A PAPPA2 Splice_Site p.X1384_splice 0.34 TCGA-FR-A3R1-01 1 176838117 176838117 C T ASTN1 Silent p.G1170G 0.35 TCGA-FR-A3R1-01 1 179631247 179631247 C T TDRD5 Silent p.I777I 0.34 TCGA-FR-A3R1-01 1 1849318 1849318 C T TMEM52 3'UTR 0.31 TCGA-FR-A3R1-01 1 196695661 196695661 G A CFH Silent p.T645T 0.42 TCGA-FR-A3R1-01 1 196795969 196795969 C T CFHR1 Silent p.F88F 0.31 TCGA-FR-A3R1-01 1 196928039 196928039 G A CFHR2 Missense_Mutation p.M214I 0.40 deleterious(0.01) probably_damaging(0.961) TCGA-FR-A3R1-01 1 197062342 197062342 C T ASPM Missense_Mutation p.G3045E 0.30 tolerated(0.3) benign(0.013) TCGA-FR-A3R1-01 1 197062343 197062343 C T ASPM Missense_Mutation p.G3045R 0.30 tolerated(0.36) benign(0.013) TCGA-FR-A3R1-01 1 197390208 197390208 G A CRB1 Missense_Mutation p.G417E 0.30 tolerated(0.09) benign(0.424) TCGA-FR-A3R1-01 1 198721860 198721860 G A PTPRC Silent p.G1156G 0.34 TCGA-FR-A3R1-01 1 198723483 198723483 C T PTPRC Nonsense_Mutation p.Q1199* 0.34 TCGA-FR-A3R1-01 1 201039511 201039511 G C CACNA1S Missense_Mutation p.P750R 0.31 deleterious(0.01) probably_damaging(1) TCGA-FR-A3R1-01 1 230915968 230915968 G A CAPN9 Silent p.E386E 0.31 TCGA-FR-A3R1-01 1 231076203 231076203 G A TTC13 Silent p.L258L 0.39 TCGA-FR-A3R1-01 1 234445036 234445036 C T SLC35F3 Silent p.I266I 0.28 TCGA-FR-A3R1-01 1 234454596 234454596 C T SLC35F3 Missense_Mutation p.P352S 0.41 tolerated(0.41) probably_damaging(0.999) TCGA-FR-A3R1-01 1 248020615 248020615 C T TRIM58 Silent p.L23L 0.32 TCGA-FR-A3R1-01 1 248525669 248525669 G A OR2T4 Missense_Mutation p.A263T 0.37 tolerated(0.22) benign(0.26) TCGA-FR-A3R1-01 1 26695065 26695065 C T ZNF683 5'UTR 0.35 TCGA-FR-A3R1-01 1 27224028 27224028 G A GPATCH3 Missense_Mutation p.R214W 0.37 tolerated(0.05) benign(0.055) TCGA-FR-A3R1-01 1 28834058 28834058 G A SNORA73B 5'Flank 0.30 TCGA-FR-A3R1-01 1 28834059 28834059 G A SNORA73B 5'Flank 0.29 TCGA-FR-A3R1-01 1 3415825 3415825 G A MEGF6 Missense_Mutation p.P991S 0.42 tolerated(0.08) possibly_damaging(0.579) TCGA-FR-A3R1-01 1 3732062 3732062 G A CEP104 Silent p.A894A 0.28 TCGA-FR-A3R1-01 1 45501783 45501783 G A ZSWIM5 Nonsense_Mutation p.Q695* 0.39 TCGA-FR-A3R1-01 1 62941448 62941448 T C DOCK7 Missense_Mutation p.K1933R 0.39 tolerated(0.09) possibly_damaging(0.858) TCGA-FR-A3R1-01 1 74540461 74540461 G A LRRIQ3 Missense_Mutation p.P294L 0.39 tolerated(0.09) benign(0.272) TCGA-FR-A3R1-01 1 77763385 77763385 T C AK5 Missense_Mutation p.I186T 0.03 deleterious(0) probably_damaging(0.995) TCGA-FR-A3R1-01 1 7848279 7848279 C T PER3 Missense_Mutation p.P189S 0.34 deleterious(0) possibly_damaging(0.857) TCGA-FR-A3R1-01 1 79093958 79093958 G A IFI44L Missense_Mutation p.D120N 0.26 tolerated(0.51) benign(0.16) TCGA-FR-A3R1-01 1 79412073 79412073 C T ELTD1 Missense_Mutation p.E71K 0.47 deleterious_low_confidence(0.01) benign(0.362) TCGA-FR-A3R1-01 20 1460428 1460428 C T SIRPB2 Missense_Mutation p.G123E 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 20 1616927 1616927 C T SIRPG Missense_Mutation p.D219N 0.39 deleterious(0) probably_damaging(0.997) TCGA-FR-A3R1-01 20 19955587 19955587 C T RIN2 Silent p.S355S 0.41 TCGA-FR-A3R1-01 20 20269565 20269565 G A C20orf26 Missense_Mutation p.G1037R 0.38 tolerated(0.24) benign(0.413) TCGA-FR-A3R1-01 20 21493012 21493013 - C NKX2-2 Frame_Shift_Ins p.D124Gfs*186 0.30 TCGA-FR-A3R1-01 20 3127585 3127585 G A FASTKD5 Missense_Mutation p.S711F 0.32 deleterious(0) probably_damaging(0.977) TCGA-FR-A3R1-01 20 31815476 31815476 G A BPIFA3 3'UTR 0.32 TCGA-FR-A3R1-01 20 36641352 36641352 G A TTI1 Silent p.I289I 0.35 TCGA-FR-A3R1-01 20 3673609 3673609 C T SIGLEC1 Silent p.L1226L 0.34 TCGA-FR-A3R1-01 20 40743912 40743912 C T PTPRT Missense_Mutation p.G1009E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 20 44530940 44530940 C A PLTP Missense_Mutation p.G381W 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 20 61444153 61444153 C T OGFR Missense_Mutation p.P396S 0.31 tolerated(0.13) benign(0.186) TCGA-FR-A3R1-01 20 742399 742399 C T SLC52A3 Silent p.A381A 0.34 TCGA-FR-A3R1-01 21 15399740 15399740 G A AP001347.6 5'Flank 0.33 TCGA-FR-A3R1-01 22 17288788 17288788 C T XKR3 Missense_Mutation p.R59Q 0.35 tolerated(0.09) possibly_damaging(0.857) TCGA-FR-A3R1-01 22 18846126 18846126 G A BCRP7 RNA 0.04 TCGA-FR-A3R1-01 22 21119191 21119191 G A PI4KA Silent p.P874P 0.27 TCGA-FR-A3R1-01 22 25315917 25315917 G A SGSM1 Silent p.L1105L 0.38 TCGA-FR-A3R1-01 22 26219626 26219626 G A MYO18B Silent p.E892E 0.30 TCGA-FR-A3R1-01 22 31524590 31524590 G A INPP5J Missense_Mutation p.E347K 0.38 tolerated(0.19) possibly_damaging(0.837) TCGA-FR-A3R1-01 22 36140219 36140219 G A RBFOX2 3'Flank 0.24 TCGA-FR-A3R1-01 22 38823444 38823444 C T KCNJ4 Missense_Mutation p.G232S 0.30 deleterious(0) probably_damaging(0.997) TCGA-FR-A3R1-01 22 38823673 38823673 G A KCNJ4 Silent p.V155V 0.33 TCGA-FR-A3R1-01 22 38823774 38823774 G A KCNJ4 Silent p.L122L 0.25 TCGA-FR-A3R1-01 22 42473393 42473393 C T FAM109B Silent p.T32T 0.36 TCGA-FR-A3R1-01 22 45593792 45593792 G A KIAA0930 Silent p.S356S 0.23 TCGA-FR-A3R1-01 2 103274180 103274180 C T SLC9A2 Silent p.I149I 0.34 TCGA-FR-A3R1-01 2 122286277 122286277 G A CLASP1 Silent p.I118I 0.38 TCGA-FR-A3R1-01 2 128321778 128321778 C T MYO7B Silent p.A23A 0.29 TCGA-FR-A3R1-01 2 130833010 130833010 C T POTEF Missense_Mutation p.D679N 0.32 deleterious_low_confidence(0.01) benign(0.118) TCGA-FR-A3R1-01 2 135738894 135738894 G A MAP3K19 Silent p.F1139F 0.37 TCGA-FR-A3R1-01 2 138030223 138030223 C T THSD7B Missense_Mutation p.P796L 0.38 tolerated(0.15) possibly_damaging(0.851) TCGA-FR-A3R1-01 2 141773453 141773453 C T LRP1B Missense_Mutation p.E668K 0.36 possibly_damaging(0.621) TCGA-FR-A3R1-01 2 142567932 142567932 C T LRP1B Missense_Mutation p.D41N 0.45 possibly_damaging(0.831) TCGA-FR-A3R1-01 2 153493002 153493002 G A FMNL2 Silent p.K914K 0.39 TCGA-FR-A3R1-01 2 158395120 158395120 G A ACVR1C Nonsense_Mutation p.R441* 0.32 TCGA-FR-A3R1-01 2 163045629 163045629 G A FAP Missense_Mutation p.P535S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A3R1-01 2 166904178 166904178 G A SCN1A Nonsense_Mutation p.R377* 0.35 TCGA-FR-A3R1-01 2 169681153 169681153 G A NOSTRIN Silent p.L41L 0.31 TCGA-FR-A3R1-01 2 178879077 178879077 C T PDE11A Silent p.A341A 0.34 TCGA-FR-A3R1-01 2 179452749 179452749 C T TTN Missense_Mutation p.E21129K 0.42 TCGA-FR-A3R1-01 2 179599565 179599565 C T TTN Missense_Mutation p.R5029Q 0.33 TCGA-FR-A3R1-01 2 180634258 180634258 C T ZNF385B Silent p.Q75Q 0.27 TCGA-FR-A3R1-01 2 18770781 18770781 C T NT5C1B 5'UTR 0.38 TCGA-FR-A3R1-01 2 189859466 189859466 C T COL3A1 Missense_Mutation p.P455L 0.37 unknown(0) TCGA-FR-A3R1-01 2 196759927 196759927 G A DNAH7 Missense_Mutation p.P1557S 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 2 207170120 207170120 G A ZDBF2 Missense_Mutation p.E290K 0.34 deleterious(0.04) benign(0.292) TCGA-FR-A3R1-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-FR-A3R1-01 2 212578266 212578266 G A ERBB4 Missense_Mutation p.P331S 0.38 tolerated(0.19) possibly_damaging(0.623) TCGA-FR-A3R1-01 2 218682838 218682838 C T TNS1 Missense_Mutation p.R1302H 0.29 deleterious(0) probably_damaging(0.973) TCGA-FR-A3R1-01 2 227946866 227946866 C T COL4A4 Missense_Mutation p.G554E 0.30 probably_damaging(0.993) TCGA-FR-A3R1-01 2 227946867 227946867 C A COL4A4 Missense_Mutation p.G554W 0.30 probably_damaging(0.995) TCGA-FR-A3R1-01 2 238274614 238274614 C T COL6A3 Silent p.Q1855Q 0.36 TCGA-FR-A3R1-01 2 241463768 241463768 G A ANKMY1 Missense_Mutation p.L367F 0.31 tolerated(0.7) benign(0.002) TCGA-FR-A3R1-01 2 26683016 26683016 G A OTOF Silent p.F1957F 0.26 TCGA-FR-A3R1-01 2 27147809 27147809 G A DPYSL5 Missense_Mutation p.E106K 0.38 deleterious(0.02) benign(0.023) TCGA-FR-A3R1-01 2 29754859 29754859 C T ALK Missense_Mutation p.G359E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 2 37496818 37496818 C A PRKD3 Missense_Mutation p.V573F 0.38 deleterious(0.02) benign(0.064) TCGA-FR-A3R1-01 2 38179109 38179109 C T RMDN2 Missense_Mutation p.P251S 0.30 tolerated(0.42) probably_damaging(0.932) TCGA-FR-A3R1-01 2 40392041 40392041 C T SLC8A1 Missense_Mutation p.E708K 0.35 deleterious(0.05) possibly_damaging(0.489) TCGA-FR-A3R1-01 2 40392042 40392042 T C SLC8A1 Silent p.G707G 0.35 TCGA-FR-A3R1-01 2 74043300 74043300 C T C2orf78 Silent p.F650F 0.31 TCGA-FR-A3R1-01 2 79384262 79384262 G A REG3A 3'UTR 0.32 TCGA-FR-A3R1-01 2 91843404 91843404 G A AC027612.6 RNA 0.30 TCGA-FR-A3R1-01 2 95944499 95944499 C T PROM2 Silent p.L361L 0.31 TCGA-FR-A3R1-01 2 97271122 97271122 G A KANSL3 Missense_Mutation p.S623F 0.36 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-FR-A3R1-01 3 100455446 100455446 C T TFG Missense_Mutation p.R203C 0.32 deleterious(0.04) possibly_damaging(0.893) TCGA-FR-A3R1-01 3 101520198 101520198 C T NXPE3 Silent p.S71S 0.36 TCGA-FR-A3R1-01 3 107097220 107097220 C T CCDC54 Silent p.F262F 0.33 TCGA-FR-A3R1-01 3 108778663 108778663 C T MORC1 Missense_Mutation p.E341K 0.30 tolerated(0.07) benign(0.093) TCGA-FR-A3R1-01 3 120764304 120764304 C T STXBP5L Missense_Mutation p.S131L 0.34 deleterious(0) benign(0.04) TCGA-FR-A3R1-01 3 12875537 12875537 G A CAND2 3'UTR 0.35 TCGA-FR-A3R1-01 3 130189712 130189712 C T COL6A5 Intron 0.30 TCGA-FR-A3R1-01 3 140406895 140406895 C T TRIM42 Silent p.I457I 0.30 TCGA-FR-A3R1-01 3 141164053 141164053 G A ZBTB38 Silent p.K941K 0.35 TCGA-FR-A3R1-01 3 149238540 149238540 G A WWTR1 3'UTR 0.37 TCGA-FR-A3R1-01 3 158991598 158991598 C T IQCJ-SCHIP1 Intron 0.36 TCGA-FR-A3R1-01 3 169540186 169540186 G A LRRIQ4 Silent p.K159K 0.34 TCGA-FR-A3R1-01 3 169637340 169637340 C T SAMD7 Silent p.I18I 0.41 TCGA-FR-A3R1-01 3 183776233 183776233 G A HTR3C Missense_Mutation p.G193D 0.24 deleterious(0.05) benign(0.072) TCGA-FR-A3R1-01 3 184700355 184700355 C T VPS8 Missense_Mutation p.A1141V 0.26 tolerated(0.13) benign(0.005) TCGA-FR-A3R1-01 3 184742121 184742121 C T VPS8 Intron 0.37 TCGA-FR-A3R1-01 3 186395478 186395478 C T HRG Missense_Mutation p.P462S 0.29 deleterious(0.03) possibly_damaging(0.682) TCGA-FR-A3R1-01 3 194061864 194061864 C T CPN2 Nonsense_Mutation p.W523* 0.45 TCGA-FR-A3R1-01 3 194392964 194392964 G A LSG1 5'UTR 0.38 TCGA-FR-A3R1-01 3 38348792 38348792 C T SLC22A14 Silent p.I188I 0.34 TCGA-FR-A3R1-01 3 38592947 38592947 C T SCN5A Missense_Mutation p.G1639E 0.35 deleterious(0.04) possibly_damaging(0.862) TCGA-FR-A3R1-01 3 38949597 38949597 C T SCN11A Missense_Mutation p.G439E 0.32 tolerated(0.1) probably_damaging(1) TCGA-FR-A3R1-01 3 39307447 39307447 T G CX3CR1 Missense_Mutation p.E217A 0.30 tolerated(0.37) benign(0.164) TCGA-FR-A3R1-01 3 40464489 40464489 G A ENTPD3 Missense_Mutation p.G327E 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 3 44943329 44943329 G A TGM4 Missense_Mutation p.D293N 0.39 tolerated(1) benign(0.005) TCGA-FR-A3R1-01 3 45152162 45152162 C T CDCP1 Missense_Mutation p.R276K 0.36 tolerated(0.94) benign(0.004) TCGA-FR-A3R1-01 3 4808372 4808372 G A ITPR1 Silent p.R1886R 0.37 TCGA-FR-A3R1-01 3 49695008 49695008 C T BSN Silent p.S2673S 0.27 TCGA-FR-A3R1-01 3 52356755 52356755 C T DNAH1 Silent p.S99S 0.32 TCGA-FR-A3R1-01 3 52360211 52360211 C T DNAH1 Silent p.I154I 0.33 TCGA-FR-A3R1-01 3 96706593 96706593 C T EPHA6 Silent p.A290A 0.41 TCGA-FR-A3R1-01 3 97806033 97806033 G A OR5AC2 Missense_Mutation p.G6E 0.30 tolerated(1) benign(0.001) TCGA-FR-A3R1-01 3 9948679 9948679 C T IL17RE Silent p.A187A 0.34 TCGA-FR-A3R1-01 3 99513100 99513100 G A COL8A1 Missense_Mutation p.E119K 0.33 deleterious(0.03) unknown(0) TCGA-FR-A3R1-01 4 103228746 103228746 G A SLC39A8 Silent p.F133F 0.30 TCGA-FR-A3R1-01 4 129880893 129880893 G A SCLT1 Silent p.T303T 0.32 TCGA-FR-A3R1-01 4 138442194 138442194 G A PCDH18 Missense_Mutation p.R1133C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 4 138453028 138453028 C T PCDH18 Missense_Mutation p.G72E 0.31 tolerated(0.08) probably_damaging(0.997) TCGA-FR-A3R1-01 4 146029233 146029233 C T ABCE1 Nonsense_Mutation p.R86* 0.28 TCGA-FR-A3R1-01 4 146560288 146560288 G A MMAA 5'UTR 0.30 TCGA-FR-A3R1-01 4 167713375 167713375 C T SPOCK3 Missense_Mutation p.E222K 0.32 tolerated(0.1) possibly_damaging(0.888) TCGA-FR-A3R1-01 4 170028093 170028093 G A SH3RF1 Silent p.S801S 0.36 TCGA-FR-A3R1-01 4 175565133 175565133 G A GLRA3 Missense_Mutation p.P400L 0.37 tolerated(0.32) benign(0.002) TCGA-FR-A3R1-01 4 187455038 187455038 G A MTNR1A Silent p.F286F 0.39 TCGA-FR-A3R1-01 4 189012654 189012654 G A TRIML2 Missense_Mutation p.S346F 0.33 tolerated(0.08) possibly_damaging(0.549) TCGA-FR-A3R1-01 4 3344764 3344764 C T RGS12 Missense_Mutation p.S661F 0.53 deleterious(0) probably_damaging(0.979) TCGA-FR-A3R1-01 4 39439574 39439574 C T KLB Missense_Mutation p.P522S 0.33 tolerated(0.07) possibly_damaging(0.665) TCGA-FR-A3R1-01 4 40115076 40115076 C T N4BP2 Missense_Mutation p.L538F 0.31 tolerated(0.06) benign(0.144) TCGA-FR-A3R1-01 4 41682063 41682063 G A LIMCH1 Nonsense_Mutation p.W803* 0.24 TCGA-FR-A3R1-01 4 42145664 42145664 C A BEND4 Missense_Mutation p.V279L 0.25 tolerated_low_confidence(0.15) benign(0.351) TCGA-FR-A3R1-01 4 42145665 42145665 G A BEND4 Silent p.D278D 0.25 TCGA-FR-A3R1-01 4 55139714 55139714 G A PDGFRA Missense_Mutation p.E459K 0.32 tolerated(0.28) benign(0.031) TCGA-FR-A3R1-01 4 6055729 6055729 G A JAKMIP1 Intron 0.53 TCGA-FR-A3R1-01 4 62598785 62598785 G A LPHN3 Silent p.R236R 0.29 TCGA-FR-A3R1-01 4 70146488 70146488 C T UGT2B28 Silent p.I90I 0.35 TCGA-FR-A3R1-01 4 77816915 77816915 C T SOWAHB Silent p.R696R 0.33 TCGA-FR-A3R1-01 4 79782555 79782555 C T BMP2K Missense_Mutation p.P334S 0.39 deleterious(0.02) probably_damaging(0.933) TCGA-FR-A3R1-01 4 99808328 99808328 T A EIF4E Missense_Mutation p.M101L 0.32 deleterious(0) benign(0.406) TCGA-FR-A3R1-01 5 101834477 101834477 G A SLCO6A1 Silent p.A24A 0.36 TCGA-FR-A3R1-01 5 110097004 110097004 C T SLC25A46 Missense_Mutation p.P260L 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 5 1255463 1255463 G A TERT Silent p.F1032F 0.33 TCGA-FR-A3R1-01 5 1318376 1318376 G A CLPTM1L 3'UTR 0.45 TCGA-FR-A3R1-01 5 132160739 132160739 G T SHROOM1 Silent p.P335P 0.36 TCGA-FR-A3R1-01 5 13727654 13727654 G A DNAH5 Missense_Mutation p.L3999F 0.30 possibly_damaging(0.849) TCGA-FR-A3R1-01 5 139222067 139222067 G A PSD2 3'UTR 0.30 TCGA-FR-A3R1-01 5 140255554 140255554 C T PCDHA12 Missense_Mutation p.S166F 0.35 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FR-A3R1-01 5 140256320 140256320 T C PCDHA12 Silent p.Y421Y 0.29 TCGA-FR-A3R1-01 5 140503497 140503497 C T PCDHB4 Silent p.L639L 0.35 TCGA-FR-A3R1-01 5 140553980 140553980 G A PCDHB7 Missense_Mutation p.E522K 0.35 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-FR-A3R1-01 5 140557781 140557781 G A PCDHB8 Missense_Mutation p.E56K 0.12 tolerated_low_confidence(0.25) benign(0.028) TCGA-FR-A3R1-01 5 140581716 140581716 G A PCDHB11 Missense_Mutation p.R790Q 0.33 tolerated_low_confidence(0.25) benign(0.004) TCGA-FR-A3R1-01 5 140746158 140746158 C T PCDHGA5 Missense_Mutation p.S754F 0.31 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FR-A3R1-01 5 156589988 156589988 C T FAM71B Missense_Mutation p.E430K 0.30 tolerated(0.14) benign(0.247) TCGA-FR-A3R1-01 5 159659148 159659148 C T FABP6 Silent p.I86I 0.30 TCGA-FR-A3R1-01 5 16091129 16091129 G A MARCH11 Missense_Mutation p.S252F 0.30 tolerated(0.08) probably_damaging(0.976) TCGA-FR-A3R1-01 5 16672917 16672917 G A MYO10 Silent p.I1730I 0.39 TCGA-FR-A3R1-01 5 168112925 168112925 A T SLIT3 Missense_Mutation p.F1108I 0.44 deleterious(0) benign(0.147) TCGA-FR-A3R1-01 5 168233516 168233516 G A SLIT3 Silent p.I290I 0.27 TCGA-FR-A3R1-01 5 172410762 172410762 G A ATP6V0E1 5'UTR 0.44 TCGA-FR-A3R1-01 5 176304232 176304232 G A UNC5A Missense_Mutation p.G473E 0.38 tolerated(0.13) probably_damaging(1) TCGA-FR-A3R1-01 5 180166600 180166600 G A OR2Y1 Silent p.F153F 0.34 TCGA-FR-A3R1-01 5 32774874 32774874 G A NPR3 Missense_Mutation p.E374K 0.29 deleterious(0) probably_damaging(0.994) TCGA-FR-A3R1-01 5 33549437 33549437 C G ADAMTS12 Missense_Mutation p.D1393H 0.36 deleterious(0) probably_damaging(0.984) TCGA-FR-A3R1-01 5 35068320 35068320 C T PRLR Missense_Mutation p.E285K 0.31 tolerated(0.35) benign(0.279) TCGA-FR-A3R1-01 5 35876293 35876293 G A IL7R Missense_Mutation p.G362E 0.23 tolerated(0.22) benign(0.167) TCGA-FR-A3R1-01 5 38352297 38352297 G A EGFLAM Splice_Site p.X137_splice 0.38 TCGA-FR-A3R1-01 5 38407112 38407112 C T EGFLAM Silent p.A337A 0.31 TCGA-FR-A3R1-01 5 40955635 40955635 C T C7 Missense_Mutation p.P414S 0.29 deleterious(0) probably_damaging(0.992) TCGA-FR-A3R1-01 5 54277896 54277896 C T ESM1 Missense_Mutation p.G127E 0.35 deleterious(0) probably_damaging(0.992) TCGA-FR-A3R1-01 5 60188971 60188971 G A ERCC8 Intron 0.35 TCGA-FR-A3R1-01 5 7866981 7866981 G A FASTKD3 Missense_Mutation p.R406C 0.29 tolerated(0.07) benign(0.002) TCGA-FR-A3R1-01 5 83360657 83360657 G A EDIL3 Missense_Mutation p.R272C 0.37 tolerated(0.05) possibly_damaging(0.79) TCGA-FR-A3R1-01 5 90024654 90024654 A - GPR98 Frame_Shift_Del p.N3444Tfs*24 0.28 TCGA-FR-A3R1-01 6 100404043 100404043 G A MCHR2 5'UTR 0.30 TCGA-FR-A3R1-01 6 106555057 106555057 G A PRDM1 Missense_Mutation p.R725Q 0.29 deleterious(0.01) benign(0.014) TCGA-FR-A3R1-01 6 106968230 106968230 A C AIM1 Silent p.T641T 0.30 TCGA-FR-A3R1-01 6 125231381 125231381 T C RP11-510H23.1 RNA 0.50 TCGA-FR-A3R1-01 6 128297904 128297904 C T PTPRK Silent p.E1295E 0.28 TCGA-FR-A3R1-01 6 135263667 135263667 G A ALDH8A1 Missense_Mutation p.P108S 0.31 deleterious(0.03) probably_damaging(0.913) TCGA-FR-A3R1-01 6 139203969 139203969 C T ECT2L Silent p.F663F 0.30 TCGA-FR-A3R1-01 6 160208881 160208881 C T TCP1 Missense_Mutation p.G58D 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 6 161162403 161162403 C T PLG Silent p.V693V 0.36 TCGA-FR-A3R1-01 6 168439361 168439361 T G KIF25 Missense_Mutation p.V149G 0.31 deleterious(0.01) possibly_damaging(0.464) TCGA-FR-A3R1-01 6 28057200 28057200 C T ZNF165 Silent p.N470N 0.23 TCGA-FR-A3R1-01 6 31550151 31550151 C T LTB Missense_Mutation p.G15E 0.33 tolerated(0.12) unknown(0) TCGA-FR-A3R1-01 6 31710717 31710717 G A MSH5 Missense_Mutation p.R112Q 0.23 tolerated(0.57) benign(0.002) TCGA-FR-A3R1-01 6 32010363 32010363 G A TNXB Missense_Mutation p.P456S 0.35 deleterious(0) probably_damaging(0.996) TCGA-FR-A3R1-01 6 32029367 32029367 G A TNXB Silent p.V2433V 0.48 TCGA-FR-A3R1-01 6 33990609 33990609 G A GRM4 Missense_Mutation p.H910Y 0.24 deleterious_low_confidence(0.04) benign(0.162) TCGA-FR-A3R1-01 6 35213795 35213796 - GGAAG SCUBE3 Frame_Shift_Ins p.L894Gfs*33 0.53 TCGA-FR-A3R1-01 6 37605104 37605104 T G MDGA1 3'UTR 0.27 TCGA-FR-A3R1-01 6 40400157 40400157 G A LRFN2 Silent p.A232A 0.26 TCGA-FR-A3R1-01 6 45922915 45922915 G A CLIC5 Silent p.L203L 0.26 TCGA-FR-A3R1-01 6 46660483 46660483 G A TDRD6 Missense_Mutation p.D1540N 0.05 tolerated(0.09) possibly_damaging(0.582) TCGA-FR-A3R1-01 6 47563623 47563623 C T CD2AP Missense_Mutation p.P379S 0.22 deleterious(0.03) benign(0.057) TCGA-FR-A3R1-01 6 47846205 47846205 C T PTCHD4 Missense_Mutation p.G792E 0.34 deleterious(0.03) possibly_damaging(0.597) TCGA-FR-A3R1-01 6 47847335 47847335 C T PTCHD4 Silent p.L415L 0.29 TCGA-FR-A3R1-01 6 51512900 51512900 G A PKHD1 Missense_Mutation p.S3776F 0.27 deleterious(0) benign(0.316) TCGA-FR-A3R1-01 6 55223885 55223885 G A GFRAL Missense_Mutation p.E301K 0.37 deleterious(0.03) possibly_damaging(0.876) TCGA-FR-A3R1-01 6 57246872 57246872 T A PRIM2 Missense_Mutation p.V200D 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A3R1-01 6 70897897 70897897 G A COL19A1 Missense_Mutation p.G992E 0.37 deleterious(0.03) probably_damaging(1) TCGA-FR-A3R1-01 6 7230884 7230884 C T RREB1 Missense_Mutation p.A851V 0.40 tolerated(0.38) benign(0.005) TCGA-FR-A3R1-01 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 6 7583283 7583283 A G DSP Missense_Mutation p.T1930A 0.28 benign(0.001) TCGA-FR-A3R1-01 6 7601643 7601643 C T SNRNP48 Missense_Mutation p.R161C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 6 88768431 88768431 C T SPACA1 Intron 0.25 TCGA-FR-A3R1-01 6 88854838 88854838 G A CNR1 Silent p.S52S 0.38 TCGA-FR-A3R1-01 6 88854839 88854839 G A CNR1 Missense_Mutation p.S52F 0.38 tolerated_low_confidence(0.07) benign(0.365) TCGA-FR-A3R1-01 6 90337353 90337353 G A ANKRD6 Missense_Mutation p.E475K 0.29 tolerated(0.06) possibly_damaging(0.574) TCGA-FR-A3R1-01 6 93955137 93955137 C T EPHA7 Missense_Mutation p.D921N 0.34 deleterious(0.02) benign(0.373) TCGA-FR-A3R1-01 7 100239143 100239143 C T TFR2 5'UTR 0.15 TCGA-FR-A3R1-01 7 100732247 100732247 C T TRIM56 Missense_Mutation p.P552S 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A3R1-01 7 112423843 112423843 G A TMEM168 Silent p.S346S 0.50 TCGA-FR-A3R1-01 7 116339798 116339798 G A MET Silent p.K220K 0.27 TCGA-FR-A3R1-01 7 116403126 116403126 C A MET Nonsense_Mutation p.S814* 0.50 TCGA-FR-A3R1-01 7 117188861 117188861 C T CFTR Missense_Mutation p.S459F 0.59 deleterious(0.01) possibly_damaging(0.819) TCGA-FR-A3R1-01 7 120906864 120906864 T A CPED1 Splice_Site p.X878_splice 0.45 TCGA-FR-A3R1-01 7 123595079 123595079 C T SPAM1 Missense_Mutation p.T328I 0.22 tolerated(0.26) benign(0.01) TCGA-FR-A3R1-01 7 126746621 126746621 G A GRM8 Missense_Mutation p.S219L 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A3R1-01 7 132481269 132481269 G A CHCHD3 Silent p.T198T 0.26 TCGA-FR-A3R1-01 7 138314862 138314862 T C SVOPL Silent p.K265K 0.49 TCGA-FR-A3R1-01 7 138713620 138713620 G A ZC3HAV1L Silent p.S196S 0.30 TCGA-FR-A3R1-01 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.22 TCGA-FR-A3R1-01 7 142131541 142131541 C T TRBV5-6 Missense_Mutation p.E72K 0.52 tolerated(0.8) benign(0.002) TCGA-FR-A3R1-01 7 142168871 142168871 C T TRBV5-4 5'UTR 0.48 TCGA-FR-A3R1-01 7 142626200 142626200 G A TRPV5 Missense_Mutation p.S168F 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 7 143658039 143658039 A T OR2F1 3'UTR 0.47 TCGA-FR-A3R1-01 7 143882866 143882866 C T CTAGE4 Missense_Mutation p.P757L 0.14 deleterious(0.02) benign(0.085) TCGA-FR-A3R1-01 7 150325380 150325380 G A GIMAP6 Silent p.P102P 0.53 TCGA-FR-A3R1-01 7 15725588 15725588 C T MEOX2 Missense_Mutation p.G147E 0.18 tolerated(0.05) possibly_damaging(0.538) TCGA-FR-A3R1-01 7 18631182 18631182 C T HDAC9 Silent p.F153F 0.14 TCGA-FR-A3R1-01 7 24843936 24843936 G A OSBPL3 Silent p.F855F 0.35 TCGA-FR-A3R1-01 7 30693131 30693131 G A CRHR2 Missense_Mutation p.P421L 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 7 37252971 37252971 C T ELMO1 Missense_Mutation p.R308K 0.22 tolerated(0.13) probably_damaging(0.997) TCGA-FR-A3R1-01 7 42079717 42079717 G A GLI3 Silent p.S316S 0.53 TCGA-FR-A3R1-01 7 44798977 44798977 C T ZMIZ2 Missense_Mutation p.S304F 0.24 deleterious(0) possibly_damaging(0.602) TCGA-FR-A3R1-01 7 47479171 47479171 G A TNS3 Missense_Mutation p.P22S 0.20 deleterious(0.04) probably_damaging(0.925) TCGA-FR-A3R1-01 7 50514070 50514070 G A FIGNL1 Nonsense_Mutation p.Q306* 0.48 TCGA-FR-A3R1-01 7 70886021 70886021 G A WBSCR17 Missense_Mutation p.E298K 0.26 tolerated(0.26) probably_damaging(0.992) TCGA-FR-A3R1-01 7 72718281 72718281 G A NSUN5 Missense_Mutation p.P294S 0.56 tolerated(0.31) benign(0.017) TCGA-FR-A3R1-01 7 75651186 75651186 G A STYXL1 Missense_Mutation p.S97F 0.25 deleterious(0.03) benign(0.076) TCGA-FR-A3R1-01 7 82579419 82579419 C T PCLO Silent p.G3495G 0.23 TCGA-FR-A3R1-01 7 84628849 84628849 G A SEMA3D Silent p.G747G 0.46 TCGA-FR-A3R1-01 7 84651889 84651889 C T SEMA3D Missense_Mutation p.R411Q 0.23 deleterious(0) possibly_damaging(0.558) TCGA-FR-A3R1-01 7 99129900 99129900 C T ZKSCAN5 3'UTR 0.26 TCGA-FR-A3R1-01 7 99621447 99621447 C A ZKSCAN1 Silent p.S106S 0.27 TCGA-FR-A3R1-01 8 105261767 105261767 C T RIMS2 Silent p.I1214I 0.27 TCGA-FR-A3R1-01 8 110477365 110477365 G A PKHD1L1 Silent p.G2768G 0.39 TCGA-FR-A3R1-01 8 125551344 125551344 C T TATDN1 5'Flank 0.41 TCGA-FR-A3R1-01 8 132052117 132052117 G A ADCY8 Missense_Mutation p.P155S 0.34 deleterious(0) probably_damaging(0.992) TCGA-FR-A3R1-01 8 133023190 133023190 A G EFR3A 3'UTR 0.39 TCGA-FR-A3R1-01 8 133141924 133141924 G A KCNQ3 Missense_Mutation p.P735L 0.35 deleterious(0.03) benign(0.038) TCGA-FR-A3R1-01 8 139323097 139323097 G A FAM135B Silent p.I48I 0.27 TCGA-FR-A3R1-01 8 17055149 17055149 C T ZDHHC2 Silent p.S144S 0.31 TCGA-FR-A3R1-01 8 24177773 24177773 G A ADAM28 Missense_Mutation p.E201K 0.30 tolerated(1) benign(0.002) TCGA-FR-A3R1-01 8 27279826 27279826 G A PTK2B Silent p.R159R 0.31 TCGA-FR-A3R1-01 8 52321071 52321071 G A PXDNL Missense_Mutation p.P1038L 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A3R1-01 8 53092722 53092722 C T ST18 Silent p.E79E 0.35 TCGA-FR-A3R1-01 8 55533835 55533835 C T RP1 Silent p.S103S 0.36 TCGA-FR-A3R1-01 8 55533867 55533867 C T RP1 Missense_Mutation p.P114L 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 8 55539467 55539467 G A RP1 Missense_Mutation p.V1009I 0.39 tolerated(0.28) benign(0.007) TCGA-FR-A3R1-01 8 67929988 67929988 C T PPP1R42 5'UTR 0.30 TCGA-FR-A3R1-01 8 68074065 68074065 C T CSPP1 Missense_Mutation p.P848L 0.32 deleterious(0.02) probably_damaging(0.928) TCGA-FR-A3R1-01 8 87229725 87229725 C T SLC7A13 Missense_Mutation p.E385K 0.52 tolerated(0.27) benign(0.05) TCGA-FR-A3R1-01 8 91937813 91937813 G A NECAB1 Missense_Mutation p.R182Q 0.32 deleterious(0.01) possibly_damaging(0.478) TCGA-FR-A3R1-01 8 97258136 97258136 G A MTERFD1 Silent p.L283L 0.35 TCGA-FR-A3R1-01 9 112963642 112963642 C T C9orf152 Silent p.L102L 0.32 TCGA-FR-A3R1-01 9 123745046 123745046 C T C5 Missense_Mutation p.V1093I 0.27 tolerated(0.89) benign(0.044) TCGA-FR-A3R1-01 9 125281422 125281422 G A OR1J4 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.02) benign(0.109) TCGA-FR-A3R1-01 9 125391067 125391067 G A OR1B1 Missense_Mutation p.H250Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A3R1-01 9 125437720 125437720 C T OR1L3 Silent p.F104F 0.36 TCGA-FR-A3R1-01 9 131339673 131339673 C T SPTAN1 Missense_Mutation p.H325Y 0.33 deleterious(0) possibly_damaging(0.847) TCGA-FR-A3R1-01 9 132638502 132638502 C T USP20 Silent p.I798I 0.30 TCGA-FR-A3R1-01 9 135975765 135975765 G A RALGDS Missense_Mutation p.T820I 0.37 deleterious(0.02) unknown(0) TCGA-FR-A3R1-01 9 137726973 137726973 C T COL5A1 Missense_Mutation p.R1765C 0.36 unknown(0) TCGA-FR-A3R1-01 9 137775168 137775168 C T FCN2 Missense_Mutation p.P79S 0.31 tolerated(0.78) benign(0.038) TCGA-FR-A3R1-01 9 140250747 140250747 G A EXD3 Silent p.L244L 0.33 TCGA-FR-A3R1-01 9 3275553 3275553 T C RFX3 Missense_Mutation p.T345A 0.70 deleterious(0.04) benign(0.028) TCGA-FR-A3R1-01 9 33798476 33798476 C T PRSS3 Intron 0.63 TCGA-FR-A3R1-01 9 37777822 37777822 G A TRMT10B 3'UTR 0.36 TCGA-FR-A3R1-01 9 43626674 43626674 C T SPATA31A6 Silent p.L671L 0.59 TCGA-FR-A3R1-01 9 78848402 78848402 C T PCSK5 Missense_Mutation p.S919L 0.26 tolerated(1) benign(0) TCGA-FR-A3R1-01 9 86482649 86482649 G A KIF27 Silent p.L962L 0.33 TCGA-FR-A3R1-01 9 96009900 96009900 C T WNK2 Nonsense_Mutation p.Q540* 0.34 TCGA-FR-A3R1-01 9 96054676 96054676 C T WNK2 Nonsense_Mutation p.Q1712* 0.36 TCGA-FR-A3R1-01 9 97081981 97081981 C T NUTM2F Missense_Mutation p.E467K 0.33 tolerated(0.12) probably_damaging(0.964) TCGA-FR-A3R1-01 X 103903589 103903589 T G IL1RAPL2 5'UTR 0.60 TCGA-FR-A3R1-01 X 105167268 105167268 C T NRK Silent p.L924L 0.74 TCGA-FR-A3R1-01 X 105865960 105865960 C T CXorf57 Silent p.I241I 0.74 TCGA-FR-A3R1-01 X 106843834 106843834 C T FRMPD3 Silent p.G888G 0.73 TCGA-FR-A3R1-01 X 107838818 107838818 C T COL4A5 Silent p.L501L 0.64 TCGA-FR-A3R1-01 X 110496253 110496253 C T CAPN6 Silent p.L163L 0.67 TCGA-FR-A3R1-01 X 120009207 120009207 G A CT47B1 Silent p.F106F 0.75 TCGA-FR-A3R1-01 X 140335850 140335850 C T SPANXC Missense_Mutation p.D32N 0.26 tolerated(0.56) benign(0.009) TCGA-FR-A3R1-01 X 140993479 140993479 C T MAGEC1 Nonsense_Mutation p.Q97* 0.65 TCGA-FR-A3R1-01 X 153130375 153130375 G A L1CAM Missense_Mutation p.L983F 0.71 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A3R1-01 X 153223312 153223312 G A HCFC1 Missense_Mutation p.S685L 0.63 deleterious(0) probably_damaging(0.974) TCGA-FR-A3R1-01 X 19764458 19764458 C T SH3KBP1 Silent p.T88T 0.73 TCGA-FR-A3R1-01 X 3242157 3242157 C T MXRA5 Silent p.A523A 0.63 TCGA-FR-A3R1-01 X 38020250 38020250 G A SRPX Silent p.I237I 0.76 TCGA-FR-A3R1-01 X 69670040 69670040 G A DLG3 Missense_Mutation p.G242E 0.52 deleterious(0.01) possibly_damaging(0.646) TCGA-FR-A3R1-01 X 73072215 73072215 G A XIST RNA 0.89 TCGA-FR-A3R1-01 X 77267115 77267115 C T ATP7A Missense_Mutation p.L706F 0.69 tolerated(0.11) benign(0.012) TCGA-FR-A3R1-01 Y 16953200 16953200 A G NLGN4Y 3'UTR 0.56 TCGA-FR-A3R1-01 Y 22923253 22923253 G A RPS4Y2 Missense_Mutation p.V116M 0.79 deleterious(0.01) benign(0.045) TCGA-FR-A3YN-06 10 102256031 102256031 G A SEC31B Missense_Mutation p.P765L 0.34 deleterious(0) probably_damaging(0.949) TCGA-FR-A3YN-06 10 102783210 102783210 G A PDZD7 Silent p.S175S 0.50 TCGA-FR-A3YN-06 10 102896692 102896692 G A TLX1 3'UTR 0.27 TCGA-FR-A3YN-06 10 103988879 103988879 G A ELOVL3 Missense_Mutation p.G228E 0.33 tolerated(0.54) possibly_damaging(0.64) TCGA-FR-A3YN-06 10 117853250 117853250 C T GFRA1 Silent p.L326L 0.38 TCGA-FR-A3YN-06 10 121338307 121338307 A G TIAL1 Silent p.L180L 0.28 TCGA-FR-A3YN-06 10 123781520 123781520 G C TACC2 Silent p.S8S 0.30 TCGA-FR-A3YN-06 10 125798077 125798077 G A CHST15 Nonsense_Mutation p.Q382* 0.33 TCGA-FR-A3YN-06 10 134664680 134664680 G A TTC40 Silent p.L1902L 0.28 TCGA-FR-A3YN-06 10 134664681 134664681 G A TTC40 Silent p.S1901S 0.28 TCGA-FR-A3YN-06 10 135367765 135367765 A T SYCE1 3'Flank 0.32 TCGA-FR-A3YN-06 10 13541976 13541976 G A BEND7 Silent p.L32L 0.32 TCGA-FR-A3YN-06 10 23287312 23287312 G A ARMC3 Missense_Mutation p.E471K 0.42 tolerated(0.09) benign(0.199) TCGA-FR-A3YN-06 10 24833968 24833968 G A KIAA1217 Missense_Mutation p.R1757K 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A3YN-06 10 27702254 27702254 C T PTCHD3 Missense_Mutation p.S309N 0.32 tolerated(0.5) benign(0.385) TCGA-FR-A3YN-06 10 28023495 28023495 C T MKX Missense_Mutation p.G243E 0.38 tolerated(1) benign(0.009) TCGA-FR-A3YN-06 10 30625894 30625894 G A MTPAP Silent p.L206L 0.36 TCGA-FR-A3YN-06 10 37507988 37507988 G A ANKRD30A Silent p.L1060L 0.33 TCGA-FR-A3YN-06 10 44053445 44053445 G A ZNF239 Missense_Mutation p.S28F 0.34 deleterious(0.04) benign(0.001) TCGA-FR-A3YN-06 10 48388965 48388965 G A RBP3 Missense_Mutation p.A638V 0.36 tolerated(0.2) possibly_damaging(0.483) TCGA-FR-A3YN-06 10 50902012 50902012 G A C10orf53 Intron 0.24 TCGA-FR-A3YN-06 10 55582574 55582574 C T PCDH15 Missense_Mutation p.E1640K 0.25 tolerated_low_confidence(0.13) benign(0.001) TCGA-FR-A3YN-06 10 60998446 60998446 G A PHYHIPL Missense_Mutation p.E193K 0.27 tolerated(0.1) benign(0.362) TCGA-FR-A3YN-06 10 61802478 61802478 G A ANK3 Missense_Mutation p.R4369W 0.40 probably_damaging(0.988) TCGA-FR-A3YN-06 10 61834035 61834035 C T ANK3 Missense_Mutation p.E2202K 0.36 probably_damaging(0.956) TCGA-FR-A3YN-06 10 69881312 69881312 C T MYPN Silent p.S39S 0.31 TCGA-FR-A3YN-06 10 72100349 72100349 G A LRRC20 Silent p.S64S 0.39 TCGA-FR-A3YN-06 10 7285528 7285528 G A SFMBT2 Missense_Mutation p.P371L 0.30 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YN-06 10 73455258 73455258 C T CDH23 Silent p.T383T 0.23 TCGA-FR-A3YN-06 10 7817757 7817757 G A KIN Silent p.V188V 0.37 TCGA-FR-A3YN-06 10 79782082 79782082 G A POLR3A Missense_Mutation p.P236S 0.34 tolerated(0.07) benign(0.139) TCGA-FR-A3YN-06 10 79785971 79785971 C T POLR3A Missense_Mutation p.G21R 0.37 deleterious(0) possibly_damaging(0.883) TCGA-FR-A3YN-06 10 81700486 81700486 C T SFTPD Silent p.Q242Q 0.31 TCGA-FR-A3YN-06 10 90524302 90524302 G A LIPN Missense_Mutation p.G121E 0.42 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YN-06 10 95076517 95076517 G A MYOF Silent p.I1884I 0.13 TCGA-FR-A3YN-06 10 95994050 95994050 C T PLCE1 Missense_Mutation p.S732F 0.34 deleterious(0) possibly_damaging(0.677) TCGA-FR-A3YN-06 10 96534972 96534972 G A CYP2C19 Missense_Mutation p.G109E 0.27 deleterious(0.03) benign(0.105) TCGA-FR-A3YN-06 10 97817640 97817640 C T CCNJ Missense_Mutation p.P265L 0.29 tolerated(0.3) benign(0.01) TCGA-FR-A3YN-06 10 98362136 98362136 A C PIK3AP1 Missense_Mutation p.V754G 0.19 deleterious(0.01) benign(0.299) TCGA-FR-A3YN-06 10 99968910 99968910 C T R3HCC1L Missense_Mutation p.H347Y 0.09 tolerated(0.76) benign(0.001) TCGA-FR-A3YN-06 11 100179193 100179193 G A CNTN5 Missense_Mutation p.G908E 0.72 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YN-06 11 108352044 108352044 C T KDELC2 Missense_Mutation p.E321K 0.70 deleterious(0) possibly_damaging(0.816) TCGA-FR-A3YN-06 11 1098701 1098701 C T MUC2 Silent p.F2357F 0.75 TCGA-FR-A3YN-06 11 123901005 123901005 C T OR10G8 Missense_Mutation p.R226W 0.79 deleterious(0) probably_damaging(0.954) TCGA-FR-A3YN-06 11 124135139 124135139 C T OR8G5 Silent p.F139F 0.66 TCGA-FR-A3YN-06 11 1267496 1267496 C T MUC5B Missense_Mutation p.P3129L 0.70 unknown(0) TCGA-FR-A3YN-06 11 17491664 17491664 G A ABCC8 Silent p.F132F 0.77 TCGA-FR-A3YN-06 11 233160 233160 C T SIRT3 Missense_Mutation p.E177K 0.82 deleterious(0) probably_damaging(0.955) TCGA-FR-A3YN-06 11 25004817 25004817 C T LUZP2 Missense_Mutation p.P248L 0.71 tolerated(0.07) benign(0.011) TCGA-FR-A3YN-06 11 30034118 30034118 G A KCNA4 Silent p.S36S 0.69 TCGA-FR-A3YN-06 11 4594702 4594702 C T C11orf40 Missense_Mutation p.E48K 0.70 tolerated_low_confidence(0.14) possibly_damaging(0.486) TCGA-FR-A3YN-06 11 47505053 47505053 G A CELF1 Silent p.A185A 0.65 TCGA-FR-A3YN-06 11 4967638 4967638 G A OR51A4 Silent p.S231S 0.68 TCGA-FR-A3YN-06 11 4968024 4968024 C T OR51A4 Missense_Mutation p.E103K 0.46 deleterious(0.02) possibly_damaging(0.861) TCGA-FR-A3YN-06 11 50003875 50003875 A G OR4C12 Missense_Mutation p.S55P 0.73 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-FR-A3YN-06 11 5345086 5345086 G A OR51B2 Silent p.L148L 0.71 TCGA-FR-A3YN-06 11 55944231 55944231 C T OR5J2 Silent p.I46I 0.68 TCGA-FR-A3YN-06 11 63520079 63520079 C G RTN3 Missense_Mutation p.R947G 0.69 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 11 64677357 64677357 G A ATG2A Missense_Mutation p.R635W 0.56 tolerated(0.11) benign(0.002) TCGA-FR-A3YN-06 11 65546386 65546386 C T AP5B1 Silent p.V526V 0.62 TCGA-FR-A3YN-06 11 6629386 6629386 A G ILK Missense_Mutation p.D67G 0.83 tolerated(0.28) possibly_damaging(0.798) TCGA-FR-A3YN-06 11 70130067 70130067 T C PPFIA1 Intron 0.10 TCGA-FR-A3YN-06 11 89531472 89531472 G A TRIM49 Silent p.S395S 0.63 TCGA-FR-A3YN-06 12 104081986 104081986 G A STAB2 Nonsense_Mutation p.W1013* 0.61 TCGA-FR-A3YN-06 12 108920197 108920197 C T SART3 Silent p.E683E 0.22 TCGA-FR-A3YN-06 12 109719395 109719395 G A FOXN4 Missense_Mutation p.L371F 0.26 tolerated(0.08) possibly_damaging(0.873) TCGA-FR-A3YN-06 12 111801266 111801266 G A FAM109A Missense_Mutation p.A2V 0.29 tolerated_low_confidence(0.1) benign(0.189) TCGA-FR-A3YN-06 12 112130534 112130534 C T ACAD10 Silent p.F7F 0.25 TCGA-FR-A3YN-06 12 112622727 112622727 G A HECTD4 Missense_Mutation p.P3202L 0.08 probably_damaging(0.994) TCGA-FR-A3YN-06 12 1137238 1137238 G A ERC1 Missense_Mutation p.E57K 0.29 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YN-06 12 117768538 117768538 C T NOS1 Missense_Mutation p.G113S 0.60 tolerated_low_confidence(0.12) benign(0.323) TCGA-FR-A3YN-06 12 118827743 118827743 C T SUDS3 Nonsense_Mutation p.Q118* 0.49 TCGA-FR-A3YN-06 12 120582538 120582538 G A GCN1L1 Nonsense_Mutation p.R1753* 0.51 TCGA-FR-A3YN-06 12 121431465 121431465 C T HNF1A Silent p.N223N 0.33 TCGA-FR-A3YN-06 12 123213940 123213940 G A HCAR1 Missense_Mutation p.S316L 0.25 tolerated(0.08) benign(0.003) TCGA-FR-A3YN-06 12 126135439 126135439 C T TMEM132B Silent p.I613I 0.23 TCGA-FR-A3YN-06 12 126138587 126138587 G A TMEM132B Silent p.G856G 0.67 TCGA-FR-A3YN-06 12 14018872 14018872 C T GRIN2B Missense_Mutation p.D91N 0.53 tolerated(0.18) benign(0.156) TCGA-FR-A3YN-06 12 18891367 18891367 C T CAPZA3 Silent p.H55H 0.24 TCGA-FR-A3YN-06 12 2061874 2061874 G A DCP1B Missense_Mutation p.S411F 0.30 deleterious(0.05) benign(0.429) TCGA-FR-A3YN-06 12 20885948 20885948 C T SLCO1C1 Missense_Mutation p.S431L 0.12 tolerated(0.8) benign(0.115) TCGA-FR-A3YN-06 12 21036450 21036450 G A SLCO1B3 Silent p.R532R 0.23 TCGA-FR-A3YN-06 12 27543168 27543168 G A ARNTL2 Silent p.K305K 0.33 TCGA-FR-A3YN-06 12 31540580 31540580 G A DENND5B Missense_Mutation p.T1261I 0.57 deleterious(0.04) benign(0.009) TCGA-FR-A3YN-06 12 431694 431694 T G KDM5A Missense_Mutation p.D772A 0.26 tolerated(0.46) benign(0.083) TCGA-FR-A3YN-06 12 43822055 43822055 G A ADAMTS20 Missense_Mutation p.P1312S 0.53 deleterious(0.04) probably_damaging(0.924) TCGA-FR-A3YN-06 12 46582738 46582738 T C SLC38A1 3'UTR 0.54 TCGA-FR-A3YN-06 12 48080605 48080605 A G RPAP3 Missense_Mutation p.L317P 0.23 deleterious(0) benign(0.386) TCGA-FR-A3YN-06 12 48369378 48369378 C T COL2A1 Missense_Mutation p.G1203E 0.26 unknown(0) TCGA-FR-A3YN-06 12 48379513 48379513 G A COL2A1 Missense_Mutation p.R560W 0.44 possibly_damaging(0.742) TCGA-FR-A3YN-06 12 48379522 48379522 G A COL2A1 Missense_Mutation p.P557S 0.44 possibly_damaging(0.698) TCGA-FR-A3YN-06 12 48920047 48920047 C T OR8S1 Silent p.F211F 0.23 TCGA-FR-A3YN-06 12 49412648 49412648 G A PRKAG1 5'Flank 0.56 TCGA-FR-A3YN-06 12 49412649 49412649 G A PRKAG1 5'Flank 0.53 TCGA-FR-A3YN-06 12 52408955 52408955 C T GRASP Missense_Mutation p.S387F 0.44 deleterious(0.02) possibly_damaging(0.804) TCGA-FR-A3YN-06 12 52408956 52408956 C T GRASP Silent p.S387S 0.44 TCGA-FR-A3YN-06 12 53495988 53495988 G A IGFBP6 3'UTR 0.40 TCGA-FR-A3YN-06 12 53671347 53671347 C T ESPL1 Missense_Mutation p.R727C 0.58 deleterious(0.03) benign(0.009) TCGA-FR-A3YN-06 12 53686654 53686654 C T ESPL1 Missense_Mutation p.R2021W 0.42 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 12 53854884 53854884 C T PCBP2 Missense_Mutation p.S154F 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 12 54348889 54348889 A C HOXC12 Missense_Mutation p.E59A 0.73 tolerated(0.27) possibly_damaging(0.906) TCGA-FR-A3YN-06 12 54911716 54911716 C T NCKAP1L Silent p.I444I 0.24 TCGA-FR-A3YN-06 12 55725536 55725536 C T OR6C3 Missense_Mutation p.P18S 0.44 tolerated_low_confidence(0.06) possibly_damaging(0.484) TCGA-FR-A3YN-06 12 56365497 56365497 G T CDK2 3'UTR 0.48 TCGA-FR-A3YN-06 12 6094763 6094763 G A VWF Silent p.V2289V 0.19 TCGA-FR-A3YN-06 12 6472754 6472754 A G SCNN1A Missense_Mutation p.L239P 0.20 tolerated(0.11) possibly_damaging(0.713) TCGA-FR-A3YN-06 12 6969551 6969551 C T USP5 Missense_Mutation p.P414S 0.25 deleterious(0) probably_damaging(0.954) TCGA-FR-A3YN-06 12 6969552 6969552 C T USP5 Missense_Mutation p.P414L 0.24 deleterious(0) probably_damaging(0.969) TCGA-FR-A3YN-06 12 7046361 7046361 C T ATN1 Missense_Mutation p.P644L 0.61 probably_damaging(0.995) TCGA-FR-A3YN-06 12 7060894 7060894 G A PTPN6 Missense_Mutation p.R44K 0.47 deleterious(0.04) benign(0.009) TCGA-FR-A3YN-06 12 72026135 72026135 C T ZFC3H1 Missense_Mutation p.E993K 0.51 tolerated(0.33) possibly_damaging(0.651) TCGA-FR-A3YN-06 12 7521555 7521555 G A CD163L1 Missense_Mutation p.S1349L 0.28 tolerated(0.13) benign(0.001) TCGA-FR-A3YN-06 12 80729767 80729767 G A OTOGL Missense_Mutation p.D1474N 0.47 tolerated(0.45) benign(0.001) TCGA-FR-A3YN-06 12 88376924 88376924 A G C12orf50 Missense_Mutation p.I392T 0.26 tolerated(1) probably_damaging(0.956) TCGA-FR-A3YN-06 12 88898936 88898936 C T KITLG Intron 0.48 TCGA-FR-A3YN-06 12 91365699 91365699 G A EPYC Nonsense_Mutation p.R194* 0.57 TCGA-FR-A3YN-06 12 91558423 91558423 C T DCN Missense_Mutation p.E95K 0.45 tolerated(0.09) possibly_damaging(0.563) TCGA-FR-A3YN-06 12 94965318 94965318 G A TMCC3 Missense_Mutation p.R443C 0.55 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YN-06 12 9997104 9997104 C T KLRF1 Silent p.F226F 0.34 TCGA-FR-A3YN-06 13 20796778 20796778 C T GJB6 3'UTR 0.64 TCGA-FR-A3YN-06 13 25672275 25672275 G A PABPC3 3'UTR 0.66 TCGA-FR-A3YN-06 13 31531168 31531168 T A TEX26 Splice_Site p.X157_splice 0.53 TCGA-FR-A3YN-06 13 36006465 36006465 G A NBEA Missense_Mutation p.R2080Q 0.62 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YN-06 13 52511699 52511699 G A ATP7B Silent p.S1272S 0.81 TCGA-FR-A3YN-06 14 101005573 101005573 G A BEGAIN Missense_Mutation p.P172L 0.17 tolerated(0.06) possibly_damaging(0.489) TCGA-FR-A3YN-06 14 101005574 101005574 G A BEGAIN Missense_Mutation p.P172S 0.16 tolerated(0.59) benign(0.032) TCGA-FR-A3YN-06 14 103803508 103803508 G A EIF5 Missense_Mutation p.R128Q 0.21 tolerated(0.8) benign(0.014) TCGA-FR-A3YN-06 14 105685584 105685584 G A BRF1 Intron 0.16 TCGA-FR-A3YN-06 14 105843125 105843125 C T PACS2 Silent p.D274D 0.21 TCGA-FR-A3YN-06 14 106692098 106692098 G A IGHV3-21 Silent p.F9F 0.16 TCGA-FR-A3YN-06 14 20216371 20216371 C A OR4Q3 Missense_Mutation p.P262H 0.08 deleterious(0) probably_damaging(0.976) TCGA-FR-A3YN-06 14 20528438 20528438 C T OR4L1 Missense_Mutation p.P79S 0.57 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 14 20943261 20943261 C T PNP Missense_Mutation p.R168W 0.51 deleterious(0.02) benign(0.166) TCGA-FR-A3YN-06 14 21833026 21833026 G A SUPT16H Missense_Mutation p.T398I 0.48 tolerated(0.18) benign(0.056) TCGA-FR-A3YN-06 14 22217496 22217496 C T TRAV5 Missense_Mutation p.S8L 0.51 tolerated(0.97) benign(0) TCGA-FR-A3YN-06 14 23902328 23902328 T C MYH7 Missense_Mutation p.N104D 0.48 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YN-06 14 24588993 24588993 G A DCAF11 Missense_Mutation p.G327E 0.57 deleterious(0) probably_damaging(0.983) TCGA-FR-A3YN-06 14 24601643 24601643 G A FITM1 Missense_Mutation p.E164K 0.50 tolerated(0.17) benign(0.217) TCGA-FR-A3YN-06 14 24735713 24735713 G A RABGGTA Missense_Mutation p.A493V 0.28 tolerated(1) benign(0.017) TCGA-FR-A3YN-06 14 24845899 24845899 C T NFATC4 Missense_Mutation p.S882F 0.31 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-FR-A3YN-06 14 25103408 25103408 C T GZMB 5'UTR 0.33 TCGA-FR-A3YN-06 14 42356795 42356795 C T LRFN5 Missense_Mutation p.P323S 0.58 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YN-06 14 50360478 50360478 C A ARF6 Silent p.I8I 0.53 TCGA-FR-A3YN-06 14 65239411 65239411 C T SPTB Missense_Mutation p.D1814N 0.27 tolerated(0.36) benign(0.018) TCGA-FR-A3YN-06 14 67671543 67671543 C T FAM71D Missense_Mutation p.P217S 0.56 tolerated_low_confidence(0.16) benign(0.01) TCGA-FR-A3YN-06 14 69358905 69358905 C T ACTN1 Silent p.R317R 0.18 TCGA-FR-A3YN-06 14 71267489 71267489 G A MAP3K9 Missense_Mutation p.P239S 0.27 deleterious(0) possibly_damaging(0.474) TCGA-FR-A3YN-06 14 72939610 72939610 G A RGS6 Silent p.R189R 0.23 TCGA-FR-A3YN-06 14 74426010 74426010 G A ENTPD5 3'Flank 0.27 TCGA-FR-A3YN-06 14 77255446 77255446 G A ANGEL1 3'UTR 0.52 TCGA-FR-A3YN-06 14 77685234 77685234 G A TMEM63C Silent p.R26R 0.20 TCGA-FR-A3YN-06 14 89307482 89307482 C T TTC8 Missense_Mutation p.T144I 0.60 deleterious(0.04) probably_damaging(0.994) TCGA-FR-A3YN-06 14 89307483 89307483 C T TTC8 Silent p.T144T 0.60 TCGA-FR-A3YN-06 14 91780157 91780157 C T CCDC88C Missense_Mutation p.S668N 0.45 tolerated(1) benign(0.02) TCGA-FR-A3YN-06 14 92136203 92136203 C T CATSPERB Missense_Mutation p.M414I 0.20 deleterious(0.01) possibly_damaging(0.548) TCGA-FR-A3YN-06 14 92361306 92361306 C T FBLN5 Missense_Mutation p.G164S 0.54 tolerated(0.63) probably_damaging(1) TCGA-FR-A3YN-06 14 93393939 93393939 G A CHGA Missense_Mutation p.E78K 0.29 deleterious(0) possibly_damaging(0.844) TCGA-FR-A3YN-06 14 94844753 94844753 G A SERPINA1 3'UTR 0.45 TCGA-FR-A3YN-06 14 94912733 94912733 C T SERPINA11 Missense_Mutation p.M284I 0.45 deleterious(0.02) benign(0.062) TCGA-FR-A3YN-06 14 95089969 95089969 G A SERPINA3 Missense_Mutation p.D364N 0.23 tolerated(0.22) possibly_damaging(0.552) TCGA-FR-A3YN-06 15 24921769 24921769 T C NPAP1 Missense_Mutation p.L252P 0.50 tolerated(0.13) benign(0.093) TCGA-FR-A3YN-06 15 25346726 25346726 C T SNORD116-27 RNA 0.40 TCGA-FR-A3YN-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.25 TCGA-FR-A3YN-06 15 25514867 25514867 G A SNORD115-48 5'Flank 0.50 TCGA-FR-A3YN-06 15 28421699 28421699 C T HERC2 Silent p.R3187R 0.54 TCGA-FR-A3YN-06 15 45668900 45668900 C T GATM Missense_Mutation p.D63N 0.25 tolerated(0.34) benign(0.039) TCGA-FR-A3YN-06 15 45668901 45668901 C T GATM Silent p.K62K 0.26 TCGA-FR-A3YN-06 15 45694537 45694537 C T SPATA5L1 5'UTR 0.58 TCGA-FR-A3YN-06 15 50535170 50535170 C T HDC Missense_Mutation p.E426K 0.24 tolerated(0.35) benign(0.132) TCGA-FR-A3YN-06 15 50550612 50550612 C T HDC Missense_Mutation p.G103R 0.37 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YN-06 15 50550613 50550613 C T HDC Silent p.L102L 0.37 TCGA-FR-A3YN-06 15 54792317 54792317 G A UNC13C Missense_Mutation p.E1701K 0.58 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-FR-A3YN-06 15 57809130 57809130 C T CGNL1 Silent p.I852I 0.23 TCGA-FR-A3YN-06 15 67709357 67709357 G A IQCH Nonsense_Mutation p.W729* 0.55 TCGA-FR-A3YN-06 15 72691188 72691188 C T TMEM202 Silent p.Y92Y 0.48 TCGA-FR-A3YN-06 15 74588151 74588151 C T CCDC33 Silent p.P384P 0.50 TCGA-FR-A3YN-06 15 75190017 75190017 G A MPI Silent p.L406L 0.61 TCGA-FR-A3YN-06 15 78917469 78917469 G A CHRNB4 3'UTR 0.26 TCGA-FR-A3YN-06 15 79755596 79755596 C T KIAA1024 Missense_Mutation p.S829F 0.23 tolerated(0.07) possibly_damaging(0.794) TCGA-FR-A3YN-06 15 79755663 79755663 G A KIAA1024 Silent p.Q851Q 0.28 TCGA-FR-A3YN-06 15 81172099 81172099 G A KIAA1199 Missense_Mutation p.R95Q 0.44 tolerated(0.06) possibly_damaging(0.795) TCGA-FR-A3YN-06 15 81636269 81636269 C T TMC3 Missense_Mutation p.E546K 0.22 deleterious(0) probably_damaging(0.987) TCGA-FR-A3YN-06 15 83447552 83447552 C T FSD2 Silent p.V359V 0.50 TCGA-FR-A3YN-06 15 83932989 83932989 G A BNC1 Silent p.S338S 0.47 TCGA-FR-A3YN-06 15 85478641 85478641 C T SLC28A1 Silent p.I491I 0.25 TCGA-FR-A3YN-06 15 89398207 89398207 G A ACAN Silent p.E797E 0.30 TCGA-FR-A3YN-06 15 89871755 89871755 C A POLG Missense_Mutation p.Q394H 0.51 tolerated(0.14) possibly_damaging(0.519) TCGA-FR-A3YN-06 16 20552029 20552029 C T ACSM2B Missense_Mutation p.E526K 0.55 deleterious(0) benign(0.187) TCGA-FR-A3YN-06 16 2436231 2436231 G A ABCA17P RNA 0.44 TCGA-FR-A3YN-06 16 2436232 2436232 G A ABCA17P RNA 0.43 TCGA-FR-A3YN-06 16 25258263 25258263 G A ZKSCAN2 Silent p.F418F 0.27 TCGA-FR-A3YN-06 16 27375019 27375019 C T IL4R Silent p.P782P 0.52 TCGA-FR-A3YN-06 16 3165302 3165302 G A ZNF205 Intron 0.32 TCGA-FR-A3YN-06 16 5108554 5108554 C T C16orf89 Silent p.K189K 0.59 TCGA-FR-A3YN-06 16 56904021 56904021 C T SLC12A3 Silent p.F205F 0.21 TCGA-FR-A3YN-06 16 57503880 57503880 C T POLR2C Silent p.L149L 0.18 TCGA-FR-A3YN-06 16 57714210 57714210 C T GPR97 Missense_Mutation p.S234F 0.17 tolerated(0.72) benign(0.134) TCGA-FR-A3YN-06 16 67263784 67263784 C T FHOD1 Missense_Mutation p.M1108I 0.18 tolerated(0.06) probably_damaging(0.968) TCGA-FR-A3YN-06 16 70729523 70729523 C T VAC14 Silent p.G653G 0.25 TCGA-FR-A3YN-06 16 70998644 70998644 C T HYDIN Silent p.L1925L 0.15 TCGA-FR-A3YN-06 16 71218810 71218810 C T HYDIN Silent p.Q73Q 0.27 TCGA-FR-A3YN-06 16 7382860 7382860 C T RBFOX1 5'UTR 0.55 TCGA-FR-A3YN-06 16 74923628 74923628 G A WDR59 Missense_Mutation p.P723L 0.37 deleterious(0) probably_damaging(0.993) TCGA-FR-A3YN-06 16 76573629 76573629 C T CNTNAP4 Silent p.I1005I 0.26 TCGA-FR-A3YN-06 16 77389943 77389943 G A ADAMTS18 Missense_Mutation p.P452S 0.54 tolerated(0.46) benign(0.309) TCGA-FR-A3YN-06 16 86546549 86546549 C T FOXF1 Missense_Mutation p.S333L 0.19 deleterious(0.02) benign(0.102) TCGA-FR-A3YN-06 16 89920915 89920915 C T SPIRE2 Silent p.L249L 0.46 TCGA-FR-A3YN-06 17 10223803 10223803 G A MYH13 Missense_Mutation p.S1041F 0.67 deleterious(0) benign(0.204) TCGA-FR-A3YN-06 17 10265540 10265540 C T MYH13 Missense_Mutation p.V134M 0.74 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A3YN-06 17 10406506 10406506 G A MYH1 Silent p.I917I 0.59 TCGA-FR-A3YN-06 17 10428870 10428870 C T MYH2 Missense_Mutation p.E1479K 0.70 deleterious(0.03) probably_damaging(0.952) TCGA-FR-A3YN-06 17 10435170 10435170 G A MYH2 Missense_Mutation p.S826F 0.77 deleterious(0) possibly_damaging(0.53) TCGA-FR-A3YN-06 17 11687708 11687708 G A DNAH9 Missense_Mutation p.G2638E 0.72 benign(0.02) TCGA-FR-A3YN-06 17 11835360 11835360 G A DNAH9 Silent p.T4045T 0.69 TCGA-FR-A3YN-06 17 27308495 27308495 G A SEZ6 Silent p.I206I 0.56 TCGA-FR-A3YN-06 17 27380539 27380539 A T PIPOX Nonsense_Mutation p.K196* 0.53 TCGA-FR-A3YN-06 17 28791722 28791722 G T CPD Nonsense_Mutation p.E1345* 0.58 TCGA-FR-A3YN-06 17 32583900 32583900 C T CCL2 3'UTR 0.55 TCGA-FR-A3YN-06 17 3436094 3436094 C T TRPV3 Missense_Mutation p.E308K 0.77 deleterious(0) possibly_damaging(0.462) TCGA-FR-A3YN-06 17 3635752 3635752 A G ITGAE Silent p.S888S 0.72 TCGA-FR-A3YN-06 17 37866711 37866711 C T ERBB2 Missense_Mutation p.A293V 0.46 deleterious(0.02) possibly_damaging(0.908) TCGA-FR-A3YN-06 17 39394567 39394567 C T KRTAP9-8 Silent p.S88S 0.27 TCGA-FR-A3YN-06 17 39637290 39637290 C T KRT35 Silent p.G20G 0.40 TCGA-FR-A3YN-06 17 39637291 39637291 C T KRT35 Missense_Mutation p.G20E 0.39 tolerated(0.19) benign(0.076) TCGA-FR-A3YN-06 17 42636175 42636175 C T FZD2 Silent p.H373H 0.31 TCGA-FR-A3YN-06 17 43907878 43907878 C T CRHR1 Silent p.I246I 0.52 TCGA-FR-A3YN-06 17 46925764 46925764 C T CALCOCO2 Missense_Mutation p.P146S 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YN-06 17 48917424 48917424 C T WFIKKN2 Missense_Mutation p.H259Y 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-FR-A3YN-06 17 61914986 61914986 C T SMARCD2 Splice_Site p.X73_splice 0.49 TCGA-FR-A3YN-06 17 62291249 62291249 G A TEX2 Missense_Mutation p.S110F 0.35 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-FR-A3YN-06 17 62500112 62500112 T C DDX5 Missense_Mutation p.K144E 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 17 66903960 66903960 G A ABCA8 Silent p.I693I 0.56 TCGA-FR-A3YN-06 17 67129877 67129877 G A ABCA6 Silent p.S232S 0.22 TCGA-FR-A3YN-06 17 71415364 71415364 G A SDK2 Silent p.I709I 0.26 TCGA-FR-A3YN-06 17 73487204 73487204 C T KIAA0195 Silent p.S401S 0.74 TCGA-FR-A3YN-06 17 73748358 73748358 G A ITGB4 Silent p.K1299K 0.31 TCGA-FR-A3YN-06 17 73952001 73952001 A G ACOX1 Missense_Mutation p.V189A 0.34 deleterious(0) probably_damaging(0.964) TCGA-FR-A3YN-06 17 76167053 76167053 C T SYNGR2 Silent p.F85F 0.29 TCGA-FR-A3YN-06 17 76167055 76167055 T C SYNGR2 Missense_Mutation p.L86S 0.29 deleterious(0) benign(0.175) TCGA-FR-A3YN-06 17 79409786 79409786 C T RP11-1055B8.7 Missense_Mutation p.L471F 0.65 probably_damaging(0.997) TCGA-FR-A3YN-06 17 79805119 79805119 C T P4HB Silent p.Q243Q 0.31 TCGA-FR-A3YN-06 17 80436763 80436763 C - NARF Frame_Shift_Del p.S203Ffs*3 0.32 TCGA-FR-A3YN-06 17 8135759 8135759 G A CTC1 Silent p.I660I 0.66 TCGA-FR-A3YN-06 18 28602372 28602372 G T DSC3 Nonsense_Mutation p.S291* 0.46 TCGA-FR-A3YN-06 18 2940655 2940655 G A LPIN2 Missense_Mutation p.H216Y 0.43 deleterious(0.05) benign(0.282) TCGA-FR-A3YN-06 18 31324415 31324415 C T ASXL3 Missense_Mutation p.H1535Y 0.44 benign(0.432) TCGA-FR-A3YN-06 18 34359456 34359456 C T FHOD3 Missense_Mutation p.A1428V 0.44 deleterious(0.02) possibly_damaging(0.55) TCGA-FR-A3YN-06 18 42530776 42530776 C T SETBP1 Missense_Mutation p.P491S 0.40 tolerated(0.4) benign(0.014) TCGA-FR-A3YN-06 18 52555344 52555344 A T RAB27B Missense_Mutation p.K154N 0.42 tolerated(0.06) benign(0.383) TCGA-FR-A3YN-06 18 55103008 55103008 G A ONECUT2 Missense_Mutation p.M20I 0.50 deleterious_low_confidence(0) benign(0.38) TCGA-FR-A3YN-06 18 61306490 61306490 C T SERPINB4 Missense_Mutation p.E233K 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3YN-06 18 66364468 66364468 G A TMX3 Missense_Mutation p.P189S 0.37 deleterious(0.01) possibly_damaging(0.654) TCGA-FR-A3YN-06 18 67231815 67231815 C T DOK6 Silent p.F53F 0.45 TCGA-FR-A3YN-06 18 67673641 67673641 C T RTTN Nonsense_Mutation p.W2167* 0.38 TCGA-FR-A3YN-06 18 7016539 7016539 A C LAMA1 Missense_Mutation p.C980W 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 18 74592200 74592217 GGAGTCGGGGCAGTCCCC - ZNF236 In_Frame_Del p.E371_P376del 0.41 TCGA-FR-A3YN-06 19 10224802 10224802 G A PPAN-P2RY11 Silent p.K591K 0.49 TCGA-FR-A3YN-06 19 1080287 1080287 C T HMHA1 Silent p.F595F 0.48 TCGA-FR-A3YN-06 19 12692276 12692276 G A ZNF490 Missense_Mutation p.R205C 0.48 tolerated(0.21) benign(0.027) TCGA-FR-A3YN-06 19 12858340 12858340 C T ASNA1 Silent p.P283P 0.26 TCGA-FR-A3YN-06 19 14043567 14043567 G A PODNL1 Missense_Mutation p.P497L 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-FR-A3YN-06 19 14266210 14266210 C T LPHN1 Silent p.G1090G 0.43 TCGA-FR-A3YN-06 19 14705441 14705441 C A CLEC17A Intron 0.19 TCGA-FR-A3YN-06 19 14829380 14829380 G A ZNF333 Missense_Mutation p.R414K 0.41 tolerated(0.09) benign(0.246) TCGA-FR-A3YN-06 19 15648189 15648189 G C CYP4F22 Missense_Mutation p.D129H 0.57 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 19 16006368 16006368 G A CYP4F2 Silent p.P97P 0.26 TCGA-FR-A3YN-06 19 17740063 17740063 C T UNC13A Missense_Mutation p.E1247K 0.33 tolerated(0.22) possibly_damaging(0.899) TCGA-FR-A3YN-06 19 19030182 19030182 C T COPE 5'UTR 0.49 TCGA-FR-A3YN-06 19 19990917 19990917 T C ZNF253 Missense_Mutation p.L63S 0.24 deleterious(0.02) benign(0.035) TCGA-FR-A3YN-06 19 20117858 20117858 C T ZNF682 Silent p.V151V 0.48 TCGA-FR-A3YN-06 19 22939060 22939060 G A ZNF99 3'Flank 0.60 TCGA-FR-A3YN-06 19 22939834 22939834 C T ZNF99 3'Flank 0.60 TCGA-FR-A3YN-06 19 2338753 2338753 C T SPPL2B Intron 0.57 TCGA-FR-A3YN-06 19 30097212 30097212 G A POP4 5'UTR 0.44 TCGA-FR-A3YN-06 19 33702164 33702164 C G SLC7A10 Missense_Mutation p.G328A 0.60 deleterious(0) probably_damaging(0.919) TCGA-FR-A3YN-06 19 35435701 35435701 C T ZNF30 Missense_Mutation p.L612F 0.57 deleterious(0.04) probably_damaging(0.997) TCGA-FR-A3YN-06 19 36278098 36278098 C T ARHGAP33 Silent p.P716P 0.25 TCGA-FR-A3YN-06 19 36279029 36279029 T G ARHGAP33 Missense_Mutation p.S1027A 0.44 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-FR-A3YN-06 19 36940247 36940247 T C ZNF566 Missense_Mutation p.N298D 0.21 tolerated(0.13) benign(0.417) TCGA-FR-A3YN-06 19 39439219 39439221 ACG - CTC-360G5.8 In_Frame_Del p.F54_V55delinsL 0.41 TCGA-FR-A3YN-06 19 39915911 39915911 C T PLEKHG2 Missense_Mutation p.P1380S 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A3YN-06 19 40408560 40408560 G A FCGBP Missense_Mutation p.P1427S 0.46 probably_damaging(0.999) TCGA-FR-A3YN-06 19 40578118 40578118 C G ZNF780A 3'Flank 0.17 TCGA-FR-A3YN-06 19 41430275 41430275 G A CYP2B7P RNA 0.50 TCGA-FR-A3YN-06 19 41744430 41744430 C T AXL Silent p.F350F 0.30 TCGA-FR-A3YN-06 19 43702385 43702385 G A PSG4 Missense_Mutation p.P158L 0.59 deleterious(0) possibly_damaging(0.781) TCGA-FR-A3YN-06 19 43762529 43762529 C T PSG9 Silent p.T356T 0.23 TCGA-FR-A3YN-06 19 43910618 43910618 G A TEX101 5'UTR 0.25 TCGA-FR-A3YN-06 19 44284865 44284865 C T KCNN4 Missense_Mutation p.G50E 0.46 tolerated(0.33) possibly_damaging(0.588) TCGA-FR-A3YN-06 19 44791738 44791738 T C ZNF235 Missense_Mutation p.H617R 0.53 deleterious(0) probably_damaging(0.986) TCGA-FR-A3YN-06 19 45184548 45184548 C T CEACAM19 Silent p.S252S 0.33 TCGA-FR-A3YN-06 19 4538228 4538228 G A LRG1 Silent p.F256F 0.26 TCGA-FR-A3YN-06 19 48967516 48967516 C T KCNJ14 Missense_Mutation p.R265C 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 19 49357015 49357015 C T PLEKHA4 Missense_Mutation p.G417E 0.58 tolerated(0.78) possibly_damaging(0.611) TCGA-FR-A3YN-06 19 49357016 49357016 C T PLEKHA4 Missense_Mutation p.G417R 0.58 tolerated(0.12) benign(0.081) TCGA-FR-A3YN-06 19 49377921 49377921 C T PPP1R15A Silent p.A477A 0.18 TCGA-FR-A3YN-06 19 49377922 49377922 C T PPP1R15A Missense_Mutation p.H478Y 0.19 tolerated(0.68) benign(0.007) TCGA-FR-A3YN-06 19 49999638 49999638 C T RPS11 5'UTR 0.31 TCGA-FR-A3YN-06 19 51455845 51455845 G A KLK5 Silent p.V23V 0.19 TCGA-FR-A3YN-06 19 52001351 52001351 C T SIGLEC12 Silent p.G442G 0.23 TCGA-FR-A3YN-06 19 5210798 5210798 G A PTPRS Silent p.I1751I 0.19 TCGA-FR-A3YN-06 19 52447746 52447746 C T ZNF613 Missense_Mutation p.H204Y 0.17 tolerated(0.26) benign(0.009) TCGA-FR-A3YN-06 19 53384770 53384773 GTGT ATGTGA ZNF320 Frame_Shift_Ins p.L204Ifs*87 0.19 TCGA-FR-A3YN-06 19 53572826 53572826 C T ZNF160 Missense_Mutation p.V321I 0.25 tolerated(0.25) possibly_damaging(0.587) TCGA-FR-A3YN-06 19 53572827 53572827 C T ZNF160 Silent p.K320K 0.24 TCGA-FR-A3YN-06 19 53747042 53747042 T C ZNF677 Missense_Mutation p.R42G 0.26 deleterious(0.02) benign(0.404) TCGA-FR-A3YN-06 19 53770868 53770868 C T VN1R4 Silent p.V17V 0.20 TCGA-FR-A3YN-06 19 53889433 53889433 C T ZNF525 3'Flank 0.24 TCGA-FR-A3YN-06 19 54799963 54799963 C T LILRA3 3'UTR 0.35 TCGA-FR-A3YN-06 19 55045098 55045098 C T KIR3DX1 Missense_Mutation p.T73I 0.56 tolerated(0.19) benign(0.006) TCGA-FR-A3YN-06 19 55147157 55147157 C T LILRB1 Intron 0.49 TCGA-FR-A3YN-06 19 55493978 55493978 C T NLRP2 Silent p.I304I 0.22 TCGA-FR-A3YN-06 19 55687458 55687458 G A SYT5 Missense_Mutation p.P96L 0.45 tolerated(0.31) benign(0.001) TCGA-FR-A3YN-06 19 57642767 57642767 C T USP29 Silent p.I908I 0.61 TCGA-FR-A3YN-06 19 58564887 58564887 G A ZSCAN1 Missense_Mutation p.G232E 0.60 tolerated(0.11) benign(0.122) TCGA-FR-A3YN-06 19 8807842 8807842 C T ACTL9 Missense_Mutation p.E404K 0.27 tolerated(0.15) possibly_damaging(0.503) TCGA-FR-A3YN-06 19 9065265 9065265 G A MUC16 Missense_Mutation p.S7394F 0.09 unknown(0) TCGA-FR-A3YN-06 19 9066116 9066116 G A MUC16 Silent p.P7110P 0.23 TCGA-FR-A3YN-06 19 9071280 9071280 G A MUC16 Missense_Mutation p.T5389I 0.50 unknown(0) TCGA-FR-A3YN-06 19 9074222 9074222 G A MUC16 Silent p.T4408T 0.22 TCGA-FR-A3YN-06 19 9453708 9453708 C T ZNF559 Silent p.T527T 0.48 TCGA-FR-A3YN-06 19 9577848 9577848 C T ZNF560 Missense_Mutation p.R592Q 0.49 deleterious(0.01) possibly_damaging(0.88) TCGA-FR-A3YN-06 1 100613822 100613822 G A TRMT13 Missense_Mutation p.S397N 0.24 tolerated(0.53) benign(0.003) TCGA-FR-A3YN-06 1 100613823 100613823 T A TRMT13 Missense_Mutation p.S397R 0.24 tolerated(0.48) benign(0.008) TCGA-FR-A3YN-06 1 101186048 101186048 C T VCAM1 Silent p.I27I 0.24 TCGA-FR-A3YN-06 1 101705292 101705292 C T S1PR1 Missense_Mutation p.S251L 0.62 deleterious(0.02) possibly_damaging(0.842) TCGA-FR-A3YN-06 1 103471393 103471393 C T COL11A1 Splice_Site p.X615_splice 0.61 TCGA-FR-A3YN-06 1 109265207 109265207 G A FNDC7 Silent p.L283L 0.14 TCGA-FR-A3YN-06 1 1117777 1117777 C T TTLL10 Silent p.Y289Y 0.66 TCGA-FR-A3YN-06 1 114123243 114123243 G T MAGI3 Silent p.L171L 0.57 TCGA-FR-A3YN-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.63 tolerated(0.06) benign(0.006) TCGA-FR-A3YN-06 1 118539256 118539256 C T SPAG17 Silent p.K1629K 0.26 TCGA-FR-A3YN-06 1 119927499 119927499 A G HAO2 Silent p.Q128Q 0.21 TCGA-FR-A3YN-06 1 12433880 12433880 A G VPS13D Silent p.S3628S 0.56 TCGA-FR-A3YN-06 1 13001248 13001248 C T PRAMEF6 Silent p.Q145Q 0.52 TCGA-FR-A3YN-06 1 150049259 150049259 C T VPS45 Missense_Mutation p.R176C 0.22 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 1 150600038 150600038 C T ENSA Missense_Mutation p.E30K 0.23 deleterious(0) probably_damaging(0.959) TCGA-FR-A3YN-06 1 151016157 151016157 C T BNIPL Missense_Mutation p.P269S 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 1 152058776 152058776 C T TCHHL1 Missense_Mutation p.G461E 0.62 tolerated(0.48) benign(0.186) TCGA-FR-A3YN-06 1 152193200 152193200 C T HRNR Missense_Mutation p.G302E 0.64 unknown(0) TCGA-FR-A3YN-06 1 153320361 153320361 C T PGLYRP4 Nonsense_Mutation p.W16* 0.15 TCGA-FR-A3YN-06 1 155015306 155015306 G A DCST1 Missense_Mutation p.E330K 0.65 deleterious(0.04) benign(0.272) TCGA-FR-A3YN-06 1 156642357 156642357 C T NES Silent p.L541L 0.19 TCGA-FR-A3YN-06 1 156810788 156810788 G A INSRR Silent p.L1257L 0.22 TCGA-FR-A3YN-06 1 156834553 156834553 G A NTRK1 Silent p.A107A 0.16 TCGA-FR-A3YN-06 1 157773845 157773845 T C FCRL1 Missense_Mutation p.T37A 0.17 tolerated(0.09) possibly_damaging(0.501) TCGA-FR-A3YN-06 1 158435715 158435715 C T OR10K1 Missense_Mutation p.R122C 0.69 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3YN-06 1 158548892 158548892 G A OR10X1 Silent p.I266I 0.20 TCGA-FR-A3YN-06 1 158725526 158725526 C T OR6K6 Silent p.I307I 0.17 TCGA-FR-A3YN-06 1 159166662 159166662 G A CADM3 Intron 0.72 TCGA-FR-A3YN-06 1 159275792 159275792 C T FCER1A Nonsense_Mutation p.Q116* 0.63 TCGA-FR-A3YN-06 1 159847249 159847249 G A CCDC19 Nonsense_Mutation p.R350* 0.19 TCGA-FR-A3YN-06 1 159888407 159888407 T C TAGLN2 3'UTR 0.10 TCGA-FR-A3YN-06 1 160151730 160151730 T A ATP1A4 Missense_Mutation p.L960I 0.64 tolerated(0.14) probably_damaging(0.997) TCGA-FR-A3YN-06 1 160313069 160313069 G A NCSTN 5'UTR 0.65 TCGA-FR-A3YN-06 1 160771659 160771659 C T LY9 Intron 0.18 TCGA-FR-A3YN-06 1 161332139 161332139 C T SDHC Silent p.G142G 0.44 TCGA-FR-A3YN-06 1 161332140 161332140 C T SDHC Silent p.L143L 0.42 TCGA-FR-A3YN-06 1 162325075 162325075 G A NOS1AP Missense_Mutation p.E232K 0.23 tolerated(0.21) benign(0.002) TCGA-FR-A3YN-06 1 166818659 166818659 C T POGK Silent p.T281T 0.22 TCGA-FR-A3YN-06 1 166845465 166845465 C T TADA1 Silent p.A2A 0.21 TCGA-FR-A3YN-06 1 167659318 167659318 A T RCSD1 Missense_Mutation p.K77N 0.63 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 1 17328564 17328564 G A ATP13A2 Missense_Mutation p.P224S 0.12 deleterious(0.02) probably_damaging(0.926) TCGA-FR-A3YN-06 1 176525351 176525351 C T PAPPA2 5'UTR 0.72 TCGA-FR-A3YN-06 1 176709237 176709237 C T PAPPA2 Silent p.I1352I 0.55 TCGA-FR-A3YN-06 1 178485756 178485756 G A TEX35 Missense_Mutation p.D75N 0.57 tolerated(0.09) benign(0.023) TCGA-FR-A3YN-06 1 184853923 184853923 T C FAM129A Missense_Mutation p.K149E 0.56 tolerated(0.13) benign(0.106) TCGA-FR-A3YN-06 1 186283268 186283268 A C PRG4 3'UTR 0.18 TCGA-FR-A3YN-06 1 1920400 1920400 A T C1orf222 Nonsense_Mutation p.L18* 0.30 TCGA-FR-A3YN-06 1 197026464 197026464 C T F13B Missense_Mutation p.E313K 0.60 deleterious(0.02) probably_damaging(0.967) TCGA-FR-A3YN-06 1 200880918 200880918 C T C1orf106 Missense_Mutation p.P433S 0.18 tolerated(0.1) benign(0.17) TCGA-FR-A3YN-06 1 205042351 205042351 C T CNTN2 Silent p.I1000I 0.23 TCGA-FR-A3YN-06 1 207039876 207039876 G A IL20 Silent p.L91L 0.63 TCGA-FR-A3YN-06 1 207112696 207112696 C T PIGR Silent p.R52R 0.18 TCGA-FR-A3YN-06 1 211652399 211652399 G A RD3 Silent p.F189F 0.67 TCGA-FR-A3YN-06 1 213178687 213178687 G A ANGEL2 Silent p.F274F 0.18 TCGA-FR-A3YN-06 1 222717407 222717407 G A HHIPL2 Missense_Mutation p.S149F 0.62 tolerated(0.53) benign(0.06) TCGA-FR-A3YN-06 1 224619204 224619204 G A WDR26 Missense_Mutation p.S201F 0.70 tolerated_low_confidence(0.17) benign(0.143) TCGA-FR-A3YN-06 1 227843393 227843393 G A ZNF678 Missense_Mutation p.R481K 0.62 tolerated(0.42) benign(0.045) TCGA-FR-A3YN-06 1 228481315 228481315 G A OBSCN Missense_Mutation p.R4139K 0.28 benign(0.009) TCGA-FR-A3YN-06 1 230883314 230883314 C T CAPN9 Silent p.S24S 0.60 TCGA-FR-A3YN-06 1 233802417 233802417 C T KCNK1 Silent p.F144F 0.68 TCGA-FR-A3YN-06 1 234367319 234367319 C T SLC35F3 Missense_Mutation p.S147F 0.28 tolerated(0.06) benign(0.33) TCGA-FR-A3YN-06 1 236433186 236433186 G A ERO1LB Missense_Mutation p.R71C 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 1 237666761 237666761 C G RYR2 Missense_Mutation p.L857V 0.58 benign(0.076) TCGA-FR-A3YN-06 1 240371147 240371147 C T FMN2 Missense_Mutation p.P1012L 0.70 unknown(0) TCGA-FR-A3YN-06 1 240458174 240458174 C T FMN2 Silent p.L1402L 0.62 TCGA-FR-A3YN-06 1 248202195 248202195 C T OR2L2 Missense_Mutation p.P209L 0.62 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YN-06 1 248436601 248436601 G A OR2T33 Silent p.I172I 0.16 TCGA-FR-A3YN-06 1 2489859 2489859 C T TNFRSF14 Missense_Mutation p.H86Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YN-06 1 32118303 32118303 C T COL16A1 Silent p.P1588P 0.20 TCGA-FR-A3YN-06 1 32687997 32687997 T C EIF3I 5'UTR 0.23 TCGA-FR-A3YN-06 1 33236282 33236282 C T KIAA1522 Missense_Mutation p.P501L 0.27 deleterious(0) unknown(0) TCGA-FR-A3YN-06 1 3350283 3350283 C T PRDM16 Missense_Mutation p.H1247Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YN-06 1 33998784 33998784 C T CSMD2 Missense_Mutation p.G3202E 0.57 tolerated(1) benign(0.41) TCGA-FR-A3YN-06 1 34011792 34011792 G A CSMD2 Missense_Mutation p.P2838L 0.58 deleterious(0) possibly_damaging(0.812) TCGA-FR-A3YN-06 1 34046353 34046353 C T CSMD2 Missense_Mutation p.A2465T 0.20 deleterious(0.04) probably_damaging(0.928) TCGA-FR-A3YN-06 1 34276417 34276417 G A CSMD2 Missense_Mutation p.S418F 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 1 35223369 35223369 C T GJB5 Silent p.L146L 0.25 TCGA-FR-A3YN-06 1 35577697 35577697 C T ZMYM1 Missense_Mutation p.S371F 0.64 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-FR-A3YN-06 1 37947259 37947259 G A ZC3H12A Missense_Mutation p.R214Q 0.60 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 1 38489261 38489261 C T UTP11L Silent p.S241S 0.60 TCGA-FR-A3YN-06 1 39801748 39801748 C T MACF1 Intron 0.23 TCGA-FR-A3YN-06 1 47284527 47284527 C A CYP4B1 3'UTR 0.21 TCGA-FR-A3YN-06 1 57372427 57372427 C T C8A Missense_Mutation p.S395L 0.68 deleterious(0.01) possibly_damaging(0.681) TCGA-FR-A3YN-06 1 62672651 62672651 G A L1TD1 Silent p.G117G 0.17 TCGA-FR-A3YN-06 1 64605943 64605943 C T ROR1 Silent p.I254I 0.57 TCGA-FR-A3YN-06 1 75038642 75038642 C T C1orf173 Missense_Mutation p.E918K 0.65 deleterious(0.01) benign(0.436) TCGA-FR-A3YN-06 1 75039016 75039016 C T C1orf173 Missense_Mutation p.G793E 0.59 deleterious(0.05) benign(0.316) TCGA-FR-A3YN-06 1 78422296 78422296 G A FUBP1 Missense_Mutation p.P556S 0.64 tolerated(0.25) unknown(0) TCGA-FR-A3YN-06 1 7863106 7863106 G A PER3 Splice_Site p.X290_splice 0.69 TCGA-FR-A3YN-06 1 79411977 79411977 C T ELTD1 Missense_Mutation p.D103N 0.19 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FR-A3YN-06 1 809577 809577 C T FAM41C 5'Flank 0.19 TCGA-FR-A3YN-06 1 809736 809736 C T FAM41C 5'Flank 0.26 TCGA-FR-A3YN-06 1 89587524 89587524 C T GBP2 Silent p.A42A 0.64 TCGA-FR-A3YN-06 1 89735060 89735060 C T GBP5 Missense_Mutation p.G60E 0.26 deleterious(0) possibly_damaging(0.89) TCGA-FR-A3YN-06 1 90399739 90399739 C T LRRC8D Missense_Mutation p.S371F 0.21 tolerated(0.17) benign(0.128) TCGA-FR-A3YN-06 1 94467528 94467528 C T ABCA4 Silent p.K2056K 0.19 TCGA-FR-A3YN-06 20 1281305 1281305 C T SNPH Silent p.I86I 0.43 TCGA-FR-A3YN-06 20 13269302 13269302 G A ISM1 Silent p.S253S 0.33 TCGA-FR-A3YN-06 20 1538236 1538236 C T SIRPD Missense_Mutation p.E22K 0.44 tolerated(0.84) unknown(0) TCGA-FR-A3YN-06 20 1617104 1617104 G A SIRPG Missense_Mutation p.P160S 0.35 tolerated(0.06) possibly_damaging(0.493) TCGA-FR-A3YN-06 20 2637193 2637193 C A NOP56 Missense_Mutation p.S386Y 0.40 deleterious(0) probably_damaging(0.979) TCGA-FR-A3YN-06 20 29993946 29993946 G A DEFB121 Missense_Mutation p.L4F 0.28 tolerated(0.4) unknown(0) TCGA-FR-A3YN-06 20 30436340 30436340 G A FOXS1 5'Flank 0.39 TCGA-FR-A3YN-06 20 35422879 35422879 G A SOGA1 Silent p.S1202S 0.54 TCGA-FR-A3YN-06 20 35827561 35827561 C T RPN2 Missense_Mutation p.P138S 0.43 tolerated(0.13) possibly_damaging(0.685) TCGA-FR-A3YN-06 20 37464766 37464766 C T PPP1R16B Silent p.F66F 0.51 TCGA-FR-A3YN-06 20 4168039 4168039 C T SMOX Silent p.F551F 0.43 TCGA-FR-A3YN-06 20 43571759 43571759 G A TOMM34 Silent p.N307N 0.41 TCGA-FR-A3YN-06 20 49218975 49218975 G A FAM65C Silent p.F427F 0.35 TCGA-FR-A3YN-06 20 60511882 60511882 G A CDH4 Missense_Mutation p.G878S 0.49 tolerated(0.52) probably_damaging(0.951) TCGA-FR-A3YN-06 20 60927133 60927133 G A LAMA5 Silent p.I230I 0.38 TCGA-FR-A3YN-06 20 61167716 61167716 C T C20orf166 Silent p.L62L 0.46 TCGA-FR-A3YN-06 20 61471977 61471977 C T COL9A3 Missense_Mutation p.P650S 0.33 deleterious(0.03) possibly_damaging(0.792) TCGA-FR-A3YN-06 20 9404437 9404437 G A PLCB4 Missense_Mutation p.D776N 0.35 deleterious(0) probably_damaging(0.933) TCGA-FR-A3YN-06 21 27840806 27840806 T C CYYR1 3'UTR 0.64 TCGA-FR-A3YN-06 21 39492469 39492469 G A DSCR4 Silent p.I54I 0.48 TCGA-FR-A3YN-06 21 41033466 41033466 G A B3GALT5 3'UTR 0.38 TCGA-FR-A3YN-06 21 43161920 43161920 G A RIPK4 Missense_Mutation p.A478V 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 21 45511868 45511868 C T TRAPPC10 Missense_Mutation p.L979F 0.31 deleterious(0) possibly_damaging(0.505) TCGA-FR-A3YN-06 21 47320508 47320508 G A PCBP3 Missense_Mutation p.G65R 0.49 deleterious(0.01) possibly_damaging(0.683) TCGA-FR-A3YN-06 21 47320509 47320509 G A PCBP3 Missense_Mutation p.G65E 0.48 deleterious(0) possibly_damaging(0.86) TCGA-FR-A3YN-06 22 17589783 17589783 C T IL17RA Silent p.Y558Y 0.40 TCGA-FR-A3YN-06 22 18653569 18653569 G A USP18 Missense_Mutation p.R258Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 22 21083628 21083628 G A PI4KA Missense_Mutation p.P1552L 0.33 deleterious(0) probably_damaging(0.947) TCGA-FR-A3YN-06 22 23011156 23011156 C T IGLV3-27 Silent p.P73P 0.34 TCGA-FR-A3YN-06 22 23915667 23915667 C T IGLL1 Missense_Mutation p.G143E 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.566) TCGA-FR-A3YN-06 22 23915669 23915669 C A IGLL1 Silent p.P142P 0.38 TCGA-FR-A3YN-06 22 32589215 32589215 C A RFPL2 Intron 0.50 TCGA-FR-A3YN-06 22 37098619 37098619 C T CACNG2 Translation_Start_Site p.M1? 0.42 deleterious(0) possibly_damaging(0.531) TCGA-FR-A3YN-06 22 40662995 40662995 C T TNRC6B Nonsense_Mutation p.R921* 0.23 TCGA-FR-A3YN-06 22 50683953 50683953 G A HDAC10 Missense_Mutation p.P665S 0.52 tolerated_low_confidence(0.06) benign(0.068) TCGA-FR-A3YN-06 22 51143207 51143207 C T SHANK3 Missense_Mutation p.P621S 0.41 probably_damaging(1) TCGA-FR-A3YN-06 2 101652558 101652558 G A TBC1D8 Missense_Mutation p.R494C 0.30 deleterious(0.03) probably_damaging(1) TCGA-FR-A3YN-06 2 113940171 113940171 C T PSD4 Silent p.F46F 0.42 TCGA-FR-A3YN-06 2 128712782 128712782 G A SAP130 Missense_Mutation p.P760S 0.46 tolerated_low_confidence(0.11) unknown(0) TCGA-FR-A3YN-06 2 133542946 133542946 C T NCKAP5 Missense_Mutation p.D480N 0.32 deleterious(0) possibly_damaging(0.495) TCGA-FR-A3YN-06 2 136437776 136437776 C T R3HDM1 Missense_Mutation p.H746Y 0.29 deleterious(0) benign(0.065) TCGA-FR-A3YN-06 2 136548427 136548427 G A LCT Silent p.R1712R 0.31 TCGA-FR-A3YN-06 2 138414490 138414490 G A THSD7B Silent p.E1413E 0.48 TCGA-FR-A3YN-06 2 141812740 141812740 C T LRP1B Silent p.R499R 0.32 TCGA-FR-A3YN-06 2 149247509 149247509 C T MBD5 Silent p.P1203P 0.27 TCGA-FR-A3YN-06 2 152293789 152293789 C T RIF1 Silent p.S469S 0.33 TCGA-FR-A3YN-06 2 15694228 15694228 G A NBAS Missense_Mutation p.R82C 0.48 deleterious(0) probably_damaging(0.991) TCGA-FR-A3YN-06 2 15763627 15763627 G A DDX1 Silent p.K505K 0.47 TCGA-FR-A3YN-06 2 165947432 165947432 G A SCN3A Missense_Mutation p.P1744L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 2 165947433 165947433 G A SCN3A Missense_Mutation p.P1744S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3YN-06 2 165947448 165947448 C T SCN3A Missense_Mutation p.G1739R 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 2 166201294 166201294 C T SCN2A Missense_Mutation p.S931F 0.31 deleterious(0) probably_damaging(0.937) TCGA-FR-A3YN-06 2 166246237 166246237 C T SCN2A Missense_Mutation p.S1974L 0.54 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 2 166852531 166852531 G A SCN1A Nonsense_Mutation p.R1525* 0.33 TCGA-FR-A3YN-06 2 170031769 170031769 G A LRP2 Missense_Mutation p.P3568S 0.37 benign(0.124) TCGA-FR-A3YN-06 2 172803230 172803230 C T HAT1 Missense_Mutation p.R39C 0.42 deleterious(0) probably_damaging(0.991) TCGA-FR-A3YN-06 2 173782551 173782551 G A RAPGEF4 Missense_Mutation p.G156R 0.44 tolerated(0.07) benign(0.174) TCGA-FR-A3YN-06 2 173782552 173782552 G A RAPGEF4 Missense_Mutation p.G156E 0.44 tolerated(0.1) benign(0.009) TCGA-FR-A3YN-06 2 178936336 178936336 C T PDE11A Missense_Mutation p.E277K 0.35 deleterious(0) possibly_damaging(0.53) TCGA-FR-A3YN-06 2 178977543 178977543 C T RBM45 Silent p.C90C 0.30 TCGA-FR-A3YN-06 2 178977544 178977544 C T RBM45 Missense_Mutation p.L91F 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-FR-A3YN-06 2 179393755 179393755 C T TTN Missense_Mutation p.E35575K 0.51 TCGA-FR-A3YN-06 2 179438160 179438160 A G TTN Silent p.T24233T 0.30 TCGA-FR-A3YN-06 2 179444752 179444752 C T TTN Missense_Mutation p.G22421E 0.50 TCGA-FR-A3YN-06 2 179486307 179486307 C T TTN Missense_Mutation p.G15082R 0.29 TCGA-FR-A3YN-06 2 179585911 179585911 T C TTN Missense_Mutation p.K7612R 0.23 TCGA-FR-A3YN-06 2 179596940 179596940 C T TTN Missense_Mutation p.E5586K 0.35 TCGA-FR-A3YN-06 2 182403895 182403895 C T CERKL Missense_Mutation p.E514K 0.35 tolerated(0.54) benign(0.15) TCGA-FR-A3YN-06 2 183050723 183050723 G A PDE1A Missense_Mutation p.S487F 0.32 tolerated(0.21) benign(0.003) TCGA-FR-A3YN-06 2 198273222 198273222 C A SF3B1 Nonsense_Mutation p.G330* 0.37 TCGA-FR-A3YN-06 2 204075774 204075774 G A NBEAL1 Missense_Mutation p.E2598K 0.42 deleterious(0.01) benign(0.012) TCGA-FR-A3YN-06 2 20647337 20647337 C T RHOB Silent p.T37T 0.37 TCGA-FR-A3YN-06 2 207174677 207174677 G A ZDBF2 Missense_Mutation p.E1809K 0.50 deleterious(0.01) benign(0.292) TCGA-FR-A3YN-06 2 207820286 207820286 A C CPO Missense_Mutation p.K89Q 0.28 tolerated(0.15) benign(0.262) TCGA-FR-A3YN-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.32 deleterious(0) probably_damaging(0.954) TCGA-FR-A3YN-06 2 219507867 219507867 G A ZNF142 Silent p.I1124I 0.39 TCGA-FR-A3YN-06 2 220338490 220338490 G A SPEG Missense_Mutation p.E1438K 0.45 probably_damaging(0.996) TCGA-FR-A3YN-06 2 228882191 228882191 C T SPHKAP Missense_Mutation p.D1127N 0.47 deleterious(0) probably_damaging(0.965) TCGA-FR-A3YN-06 2 228882709 228882709 C T SPHKAP Missense_Mutation p.G954E 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 2 228884220 228884220 G A SPHKAP Silent p.I450I 0.55 TCGA-FR-A3YN-06 2 234358772 234358772 G A DGKD Missense_Mutation p.R678H 0.06 tolerated(0.1) benign(0.009) TCGA-FR-A3YN-06 2 234442296 234442296 G A USP40 Missense_Mutation p.P445S 0.55 tolerated(0.18) benign(0.004) TCGA-FR-A3YN-06 2 234526522 234526522 G T UGT1A8 Missense_Mutation p.V57L 0.44 deleterious(0.04) benign(0.03) TCGA-FR-A3YN-06 2 234545975 234545975 G A UGT1A10 Missense_Mutation p.M269I 0.47 tolerated(0.08) benign(0.042) TCGA-FR-A3YN-06 2 234580887 234580887 C G UGT1A9 Missense_Mutation p.R103G 0.48 tolerated(0.49) benign(0.004) TCGA-FR-A3YN-06 2 238275411 238275411 C T COL6A3 Missense_Mutation p.E1807K 0.32 possibly_damaging(0.908) TCGA-FR-A3YN-06 2 238280784 238280784 C T COL6A3 Silent p.K1292K 0.34 TCGA-FR-A3YN-06 2 240961663 240961663 C G NDUFA10 Missense_Mutation p.S57T 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A3YN-06 2 241078628 241078628 C T OTOS Missense_Mutation p.G77R 0.34 tolerated(0.05) probably_damaging(1) TCGA-FR-A3YN-06 2 241401698 241401698 G A GPC1 Missense_Mutation p.R139K 0.29 tolerated(0.87) benign(0.004) TCGA-FR-A3YN-06 2 241570335 241570335 G A GPR35 3'UTR 0.39 TCGA-FR-A3YN-06 2 24413502 24413502 C T FAM228A 3'UTR 0.44 TCGA-FR-A3YN-06 2 26717846 26717846 G A OTOF Silent p.S287S 0.36 TCGA-FR-A3YN-06 2 37471080 37471080 G A NDUFAF7 Silent p.L252L 0.54 TCGA-FR-A3YN-06 2 38216696 38216696 G A RMDN2 Silent p.L446L 0.50 TCGA-FR-A3YN-06 2 39485688 39485688 C T MAP4K3 Silent p.E783E 0.46 TCGA-FR-A3YN-06 2 47705472 47705472 G A MSH2 Missense_Mutation p.D758N 0.53 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YN-06 2 54081855 54081855 G C GPR75 Silent p.A13A 0.25 TCGA-FR-A3YN-06 2 56097972 56097972 T A EFEMP1 Silent p.R401R 0.07 TCGA-FR-A3YN-06 2 74605288 74605288 G A DCTN1 Missense_Mutation p.H40Y 0.45 tolerated(1) benign(0.01) TCGA-FR-A3YN-06 2 80874935 80874935 C T CTNNA2 Nonsense_Mutation p.Q886* 0.32 TCGA-FR-A3YN-06 2 95944843 95944843 G A PROM2 Missense_Mutation p.E409K 0.38 tolerated(0.33) benign(0.253) TCGA-FR-A3YN-06 2 96956091 96956091 G A SNRNP200 Silent p.I905I 0.48 TCGA-FR-A3YN-06 2 97361523 97361523 G A FER1L5 RNA 0.58 TCGA-FR-A3YN-06 3 10276209 10276209 G T IRAK2 Nonsense_Mutation p.E447* 0.24 TCGA-FR-A3YN-06 3 105378050 105378050 G A CBLB Missense_Mutation p.P905S 0.27 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-FR-A3YN-06 3 108117950 108117950 G A MYH15 Missense_Mutation p.S1654F 0.28 deleterious(0.04) probably_damaging(0.95) TCGA-FR-A3YN-06 3 108682309 108682309 C T MORC1 Silent p.L917L 0.21 TCGA-FR-A3YN-06 3 112545961 112545961 G A CD200R1L Silent p.Y186Y 0.26 TCGA-FR-A3YN-06 3 113775248 113775248 C G KIAA1407 Silent p.R22R 0.38 TCGA-FR-A3YN-06 3 113775403 113775403 C T KIAA1407 5'UTR 0.38 TCGA-FR-A3YN-06 3 118866328 118866328 A G C3orf30 Missense_Mutation p.N431S 0.56 tolerated(0.16) benign(0.201) TCGA-FR-A3YN-06 3 122044101 122044101 G C CSTA 5'UTR 0.23 TCGA-FR-A3YN-06 3 124393438 124393438 A G KALRN Silent p.A481A 0.21 TCGA-FR-A3YN-06 3 126114872 126114872 C T CCDC37 Missense_Mutation p.S10F 0.31 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-FR-A3YN-06 3 129696123 129696123 A C TRH 3'UTR 0.36 TCGA-FR-A3YN-06 3 148924004 148924004 G A CP Missense_Mutation p.P387S 0.50 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YN-06 3 154055976 154055976 G A GPR149 Missense_Mutation p.L570F 0.46 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 3 172533494 172533494 C T ECT2 Missense_Mutation p.S834L 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A3YN-06 3 172607351 172607351 C T SPATA16 3'UTR 0.49 TCGA-FR-A3YN-06 3 186459581 186459581 G A KNG1 Missense_Mutation p.E466K 0.24 tolerated(0.17) benign(0) TCGA-FR-A3YN-06 3 189604281 189604281 A G TP63 Missense_Mutation p.N483S 0.35 tolerated(0.28) benign(0.018) TCGA-FR-A3YN-06 3 189607219 189607219 C T TP63 Missense_Mutation p.S533F 0.24 deleterious(0) possibly_damaging(0.459) TCGA-FR-A3YN-06 3 193336700 193336700 C T OPA1 Missense_Mutation p.S200F 0.50 tolerated(0.1) benign(0.002) TCGA-FR-A3YN-06 3 195398025 195398025 C T SDHAP2 RNA 0.27 TCGA-FR-A3YN-06 3 195453192 195453192 C T MUC20 Missense_Mutation p.S573F 0.28 tolerated(0.71) unknown(0) TCGA-FR-A3YN-06 3 20142942 20142942 A T KAT2B Missense_Mutation p.Y278F 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 3 33438598 33438598 C A UBP1 Missense_Mutation p.D404Y 0.30 deleterious(0) probably_damaging(0.98) TCGA-FR-A3YN-06 3 369886 369886 C T CHL1 Silent p.F78F 0.23 TCGA-FR-A3YN-06 3 38348001 38348001 C T SLC22A14 Missense_Mutation p.P162S 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A3YN-06 3 38753769 38753769 C T SCN10A Silent p.S1324S 0.53 TCGA-FR-A3YN-06 3 38833631 38833631 G A SCN10A Missense_Mutation p.T100I 0.27 deleterious(0.05) possibly_damaging(0.456) TCGA-FR-A3YN-06 3 40291795 40291795 G A MYRIP Missense_Mutation p.R782Q 0.37 tolerated(0.08) benign(0.101) TCGA-FR-A3YN-06 3 432672 432672 G A CHL1 Missense_Mutation p.G874E 0.22 tolerated(0.96) benign(0.159) TCGA-FR-A3YN-06 3 44683497 44683497 C T ZNF197 Missense_Mutation p.P292L 0.18 tolerated(0.08) benign(0.001) TCGA-FR-A3YN-06 3 45541995 45541995 G A LARS2 Missense_Mutation p.E562K 0.57 deleterious(0) probably_damaging(0.979) TCGA-FR-A3YN-06 3 46062447 46062447 G A XCR1 Silent p.S331S 0.29 TCGA-FR-A3YN-06 3 47125335 47125335 G A SETD2 Missense_Mutation p.P1979S 0.32 deleterious(0.01) benign(0.146) TCGA-FR-A3YN-06 3 50324677 50324677 G A LSMEM2 3'UTR 0.27 TCGA-FR-A3YN-06 3 51937006 51937006 C T IQCF1 Missense_Mutation p.A35T 0.24 tolerated(0.09) benign(0.138) TCGA-FR-A3YN-06 3 52557922 52557922 G T STAB1 Silent p.A2477A 0.46 TCGA-FR-A3YN-06 3 52557923 52557923 G A STAB1 Missense_Mutation p.A2478T 0.46 tolerated(0.43) benign(0.013) TCGA-FR-A3YN-06 3 55922446 55922446 C T ERC2 Silent p.R845R 0.32 TCGA-FR-A3YN-06 3 56468963 56468963 G A ERC2 Missense_Mutation p.P25S 0.18 deleterious(0) probably_damaging(0.986) TCGA-FR-A3YN-06 3 62518605 62518605 G A CADPS Silent p.I744I 0.53 TCGA-FR-A3YN-06 3 68466514 68466514 C T FAM19A1 Missense_Mutation p.S68F 0.39 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YN-06 3 97869045 97869045 G A OR5H14 Missense_Mutation p.M272I 0.43 tolerated(0.7) benign(0.008) TCGA-FR-A3YN-06 4 100273819 100273819 C T ADH1C Missense_Mutation p.G5E 0.18 probably_damaging(0.996) TCGA-FR-A3YN-06 4 102839170 102839170 C T BANK1 Missense_Mutation p.P344S 0.15 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YN-06 4 108866410 108866410 C T CYP2U1 Silent p.L259L 0.16 TCGA-FR-A3YN-06 4 108969862 108969862 G T LEF1 3'UTR 0.65 TCGA-FR-A3YN-06 4 122741864 122741864 A G CCNA2 Silent p.S209S 0.58 TCGA-FR-A3YN-06 4 125591206 125591206 G A ANKRD50 Nonsense_Mutation p.Q1076* 0.61 TCGA-FR-A3YN-06 4 126371363 126371363 G A FAT4 Silent p.K3064K 0.62 TCGA-FR-A3YN-06 4 129120711 129120711 T C LARP1B Silent p.F707F 0.14 TCGA-FR-A3YN-06 4 129128529 129128529 C T LARP1B Silent p.F846F 0.54 TCGA-FR-A3YN-06 4 129867244 129867244 A G SCLT1 Missense_Mutation p.F453L 0.10 tolerated(0.07) benign(0.03) TCGA-FR-A3YN-06 4 141543410 141543410 C T TBC1D9 Missense_Mutation p.R1247Q 0.20 deleterious_low_confidence(0.03) benign(0.007) TCGA-FR-A3YN-06 4 146032131 146032131 C T ABCE1 Silent p.L209L 0.55 TCGA-FR-A3YN-06 4 155720261 155720261 G A RBM46 Missense_Mutation p.R316K 0.19 tolerated(0.14) benign(0.002) TCGA-FR-A3YN-06 4 184240633 184240633 G A CLDN22 3'UTR 0.09 TCGA-FR-A3YN-06 4 185940986 185940986 G C HELT Missense_Mutation p.G158A 0.17 tolerated(0.07) possibly_damaging(0.684) TCGA-FR-A3YN-06 4 187541328 187541328 T A FAT1 Nonsense_Mutation p.K2138* 0.66 TCGA-FR-A3YN-06 4 20493499 20493499 T C SLIT2 Silent p.N297N 0.24 TCGA-FR-A3YN-06 4 20535283 20535283 C T SLIT2 Missense_Mutation p.R593C 0.15 deleterious(0.04) possibly_damaging(0.76) TCGA-FR-A3YN-06 4 20611688 20611688 G A SLIT2 Missense_Mutation p.D1249N 0.65 tolerated(0.61) possibly_damaging(0.626) TCGA-FR-A3YN-06 4 25806268 25806268 G A SEL1L3 Silent p.I557I 0.58 TCGA-FR-A3YN-06 4 3240315 3240315 C T HTT Silent p.F3011F 0.59 TCGA-FR-A3YN-06 4 40098948 40098948 T G N4BP2 5'UTR 0.62 TCGA-FR-A3YN-06 4 49005893 49005893 C T CWH43 Missense_Mutation p.T315I 0.19 deleterious(0.01) benign(0.017) TCGA-FR-A3YN-06 4 49005894 49005894 C T CWH43 Silent p.T315T 0.19 TCGA-FR-A3YN-06 4 57798079 57798079 C T REST Silent p.L1019L 0.18 TCGA-FR-A3YN-06 4 68424505 68424505 A G STAP1 5'UTR 0.19 TCGA-FR-A3YN-06 4 70455108 70455108 C T UGT2A1 Silent p.K688K 0.59 TCGA-FR-A3YN-06 4 71068893 71068893 G A ODAM Silent p.R277R 0.17 TCGA-FR-A3YN-06 4 71114847 71114847 C T CSN3 Missense_Mutation p.P74S 0.30 tolerated(0.12) possibly_damaging(0.876) TCGA-FR-A3YN-06 4 79360125 79360125 G A FRAS1 Missense_Mutation p.M1812I 0.22 benign(0.01) TCGA-FR-A3YN-06 4 88766381 88766381 A C MEPE Missense_Mutation p.T121P 0.20 tolerated(0.13) benign(0.046) TCGA-FR-A3YN-06 4 88766382 88766382 C T MEPE Missense_Mutation p.T121I 0.20 deleterious(0.05) benign(0.257) TCGA-FR-A3YN-06 4 887663 887663 G A GAK Silent p.I292I 0.65 TCGA-FR-A3YN-06 4 91389455 91389455 G A CCSER1 Missense_Mutation p.M558I 0.60 tolerated(0.06) benign(0.009) TCGA-FR-A3YN-06 4 98893472 98893472 G A STPG2 Nonsense_Mutation p.Q298* 0.19 TCGA-FR-A3YN-06 5 10250002 10250002 G A FAM173B 5'Flank 0.24 TCGA-FR-A3YN-06 5 11111118 11111118 G A CTNND2 Missense_Mutation p.S772L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 5 112176147 112176147 C T APC Missense_Mutation p.P1619L 0.56 possibly_damaging(0.844) TCGA-FR-A3YN-06 5 1235772 1235772 G A SLC6A18 Missense_Mutation p.G206R 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 5 135282894 135282894 G A LECT2 3'UTR 0.15 TCGA-FR-A3YN-06 5 139747410 139747410 G A SLC4A9 Missense_Mutation p.A785T 0.48 tolerated(0.27) probably_damaging(1) TCGA-FR-A3YN-06 5 140166824 140166824 G A PCDHA1 Missense_Mutation p.E317K 0.52 tolerated_low_confidence(0.34) benign(0.027) TCGA-FR-A3YN-06 5 140186775 140186775 G A PCDHA4 Translation_Start_Site p.M1? 0.46 deleterious_low_confidence(0) benign(0.184) TCGA-FR-A3YN-06 5 140188763 140188763 C T PCDHA4 Missense_Mutation p.T664I 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A3YN-06 5 140432252 140432252 G A PCDHB1 Silent p.G399G 0.28 TCGA-FR-A3YN-06 5 140503275 140503275 G A PCDHB4 Silent p.Q565Q 0.61 TCGA-FR-A3YN-06 5 148719696 148719696 C T AFAP1L1 3'UTR 0.43 TCGA-FR-A3YN-06 5 150443209 150443209 G A TNIP1 Missense_Mutation p.S79F 0.21 tolerated(0.1) possibly_damaging(0.784) TCGA-FR-A3YN-06 5 150947138 150947138 T C FAT2 Missense_Mutation p.N452S 0.57 probably_damaging(0.998) TCGA-FR-A3YN-06 5 153149918 153149918 G A GRIA1 Missense_Mutation p.G748E 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 5 154311712 154311712 C T GEMIN5 Nonsense_Mutation p.W203* 0.50 TCGA-FR-A3YN-06 5 156746841 156746841 G A CYFIP2 Silent p.R450R 0.26 TCGA-FR-A3YN-06 5 156934110 156934110 G A ADAM19 Missense_Mutation p.P315L 0.44 deleterious(0) possibly_damaging(0.89) TCGA-FR-A3YN-06 5 160067535 160067535 C T ATP10B Silent p.R311R 0.23 TCGA-FR-A3YN-06 5 167882456 167882456 T C WWC1 Silent p.F918F 0.60 TCGA-FR-A3YN-06 5 169423093 169423093 C T DOCK2 Silent p.V999V 0.54 TCGA-FR-A3YN-06 5 170345817 170345817 C T RANBP17 Missense_Mutation p.P352L 0.38 deleterious(0.01) benign(0.001) TCGA-FR-A3YN-06 5 176289705 176289705 G A UNC5A Missense_Mutation p.E51K 0.34 deleterious(0.01) benign(0.23) TCGA-FR-A3YN-06 5 176696738 176696738 C T NSD1 Silent p.F1813F 0.55 TCGA-FR-A3YN-06 5 176951758 176951758 G A FAM193B Missense_Mutation p.P575L 0.46 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FR-A3YN-06 5 178413652 178413652 G A GRM6 Missense_Mutation p.P535S 0.29 tolerated(0.18) benign(0.034) TCGA-FR-A3YN-06 5 180374515 180374515 C T BTNL8 Missense_Mutation p.T226I 0.21 tolerated(0.27) benign(0.041) TCGA-FR-A3YN-06 5 180374516 180374516 C T BTNL8 Silent p.T226T 0.22 TCGA-FR-A3YN-06 5 180431420 180431420 G A BTNL3 Nonsense_Mutation p.W271* 0.35 TCGA-FR-A3YN-06 5 180665143 180665143 G A GNB2L1 Missense_Mutation p.R245C 0.46 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 5 19473535 19473535 G A CDH18 Silent p.L725L 0.46 TCGA-FR-A3YN-06 5 24488092 24488092 C T CDH10 Missense_Mutation p.E683K 0.52 tolerated(0.39) benign(0.025) TCGA-FR-A3YN-06 5 35957434 35957434 C T UGT3A1 Missense_Mutation p.E311K 0.53 tolerated(0.07) benign(0.015) TCGA-FR-A3YN-06 5 37186469 37186469 G A C5orf42 Missense_Mutation p.P1370S 0.50 tolerated(0.05) probably_damaging(0.945) TCGA-FR-A3YN-06 5 39127898 39127898 G A FYB Missense_Mutation p.P628S 0.21 deleterious(0.03) possibly_damaging(0.662) TCGA-FR-A3YN-06 5 39202235 39202235 G A FYB Silent p.S286S 0.33 TCGA-FR-A3YN-06 5 40972550 40972550 A G C7 Missense_Mutation p.H643R 0.25 tolerated(0.5) benign(0.222) TCGA-FR-A3YN-06 5 41061705 41061705 C T MROH2B Missense_Mutation p.M194I 0.25 tolerated(0.29) benign(0.078) TCGA-FR-A3YN-06 5 41155106 41155106 C T C6 Missense_Mutation p.G690E 0.56 tolerated(0.18) benign(0.257) TCGA-FR-A3YN-06 5 41161899 41161899 C T C6 Missense_Mutation p.G452R 0.29 deleterious(0) benign(0.005) TCGA-FR-A3YN-06 5 41382136 41382136 C T PLCXD3 Missense_Mutation p.E202K 0.47 tolerated(0.24) benign(0.082) TCGA-FR-A3YN-06 5 45262407 45262407 C T HCN1 Silent p.P763P 0.44 TCGA-FR-A3YN-06 5 45262518 45262518 C T HCN1 Silent p.Q726Q 0.48 TCGA-FR-A3YN-06 5 68609835 68609847 GCCTTAATTCTTC - CCDC125 Frame_Shift_Del p.E111Nfs*7 0.46 TCGA-FR-A3YN-06 5 79854808 79854808 G A ANKRD34B Missense_Mutation p.P344L 0.26 tolerated(0.11) benign(0.004) TCGA-FR-A3YN-06 5 83239377 83239377 C T EDIL3 Missense_Mutation p.G435E 0.31 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YN-06 5 96432560 96432560 C T LIX1 Nonsense_Mutation p.W172* 0.51 TCGA-FR-A3YN-06 6 100957114 100957114 G A ASCC3 3'UTR 0.31 TCGA-FR-A3YN-06 6 102247616 102247616 C T GRIK2 Nonsense_Mutation p.R349* 0.22 TCGA-FR-A3YN-06 6 106989481 106989481 C T AIM1 Silent p.F1214F 0.55 TCGA-FR-A3YN-06 6 117252524 117252524 C T RFX6 Missense_Mutation p.S881F 0.16 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FR-A3YN-06 6 117609896 117609896 T G ROS1 Missense_Mutation p.N2268T 0.49 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-FR-A3YN-06 6 119301317 119301317 C T FAM184A Missense_Mutation p.E763K 0.19 tolerated(0.15) benign(0.047) TCGA-FR-A3YN-06 6 123319301 123319301 G A CLVS2 Missense_Mutation p.D127N 0.51 tolerated(0.11) benign(0.393) TCGA-FR-A3YN-06 6 136500192 136500192 G A PDE7B Silent p.Q287Q 0.48 TCGA-FR-A3YN-06 6 149777834 149777834 C T ZC3H12D Silent p.Q216Q 0.30 TCGA-FR-A3YN-06 6 150569882 150569882 G A PPP1R14C Missense_Mutation p.E142K 0.44 tolerated(0.65) possibly_damaging(0.739) TCGA-FR-A3YN-06 6 151331022 151331022 C T MTHFD1L Silent p.S731S 0.21 TCGA-FR-A3YN-06 6 152708285 152708285 C T SYNE1 Silent p.K2803K 0.24 TCGA-FR-A3YN-06 6 157511279 157511279 T C ARID1B Missense_Mutation p.M1266T 0.07 benign(0.146) TCGA-FR-A3YN-06 6 160477489 160477489 T C IGF2R Missense_Mutation p.C910R 0.43 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 6 163956050 163956050 C T QKI Silent p.L147L 0.45 TCGA-FR-A3YN-06 6 24175005 24175005 C T DCDC2 Missense_Mutation p.E462K 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A3YN-06 6 25779440 25779440 C T SLC17A4 3'UTR 0.19 TCGA-FR-A3YN-06 6 25862219 25862219 G A SLC17A3 Silent p.I114I 0.26 TCGA-FR-A3YN-06 6 2749389 2749389 G A MYLK4 Missense_Mutation p.S47L 0.44 tolerated_low_confidence(0.2) benign(0.001) TCGA-FR-A3YN-06 6 30880155 30880155 C T GTF2H4 Missense_Mutation p.R337W 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 6 31084082 31084082 G A CDSN Missense_Mutation p.S437F 0.19 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FR-A3YN-06 6 31778008 31778008 G A HSPA1L Missense_Mutation p.S581L 0.53 deleterious_low_confidence(0.03) possibly_damaging(0.544) TCGA-FR-A3YN-06 6 32138504 32138504 G A AGPAT1 Intron 0.50 TCGA-FR-A3YN-06 6 33240442 33240442 G T RPS18 Missense_Mutation p.R14L 0.25 deleterious(0) probably_damaging(0.977) TCGA-FR-A3YN-06 6 348796 348796 G A DUSP22 Missense_Mutation p.G155R 0.22 tolerated(0.12) probably_damaging(0.949) TCGA-FR-A3YN-06 6 35056388 35056388 C G ANKS1A 3'UTR 0.54 TCGA-FR-A3YN-06 6 35393949 35393949 C T PPARD 3'UTR 0.73 TCGA-FR-A3YN-06 6 36293084 36293084 G A C6orf222 Missense_Mutation p.P382S 0.58 tolerated(0.29) benign(0.005) TCGA-FR-A3YN-06 6 38950164 38950164 G A DNAH8 Missense_Mutation p.E4076K 0.42 probably_damaging(0.956) TCGA-FR-A3YN-06 6 43109755 43109755 C T PTK7 Missense_Mutation p.P627S 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 6 44272529 44272529 C T AARS2 Silent p.V535V 0.21 TCGA-FR-A3YN-06 6 46657585 46657585 A T TDRD6 Missense_Mutation p.N574Y 0.27 deleterious(0) probably_damaging(0.991) TCGA-FR-A3YN-06 6 49754426 49754426 C T PGK2 Missense_Mutation p.D159N 0.23 deleterious(0.02) benign(0.398) TCGA-FR-A3YN-06 6 51890188 51890188 C T PKHD1 Missense_Mutation p.G1474R 0.55 tolerated(0.07) probably_damaging(0.983) TCGA-FR-A3YN-06 6 69640525 69640525 G A BAI3 Missense_Mutation p.E278K 0.58 tolerated(0.54) benign(0.001) TCGA-FR-A3YN-06 6 7240823 7240823 C T RREB1 Missense_Mutation p.H1321Y 0.47 deleterious(0) possibly_damaging(0.713) TCGA-FR-A3YN-06 6 82459706 82459706 C T FAM46A Silent p.V345V 0.24 TCGA-FR-A3YN-06 6 82924368 82924368 G A IBTK Missense_Mutation p.L594F 0.50 tolerated(0.22) benign(0.392) TCGA-FR-A3YN-06 6 84117513 84117513 G A ME1 Silent p.F62F 0.19 TCGA-FR-A3YN-06 7 100151772 100151772 C T AGFG2 Silent p.P214P 0.58 TCGA-FR-A3YN-06 7 100364799 100364799 C T ZAN Silent p.I1593I 0.52 TCGA-FR-A3YN-06 7 100488547 100488547 G A ACHE 3'UTR 0.21 TCGA-FR-A3YN-06 7 102574540 102574540 C T LRRC17 Silent p.L60L 0.61 TCGA-FR-A3YN-06 7 117060293 117060293 G A ASZ1 Missense_Mutation p.H122Y 0.52 tolerated(1) benign(0.005) TCGA-FR-A3YN-06 7 120387881 120387881 G A KCND2 Missense_Mutation p.G621E 0.63 tolerated_low_confidence(0.75) benign(0.007) TCGA-FR-A3YN-06 7 121652936 121652936 C T PTPRZ1 Missense_Mutation p.S1279F 0.23 tolerated_low_confidence(0.72) benign(0.004) TCGA-FR-A3YN-06 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.60 tolerated(1) benign(0.03) TCGA-FR-A3YN-06 7 127230119 127230119 G A ARF5 Splice_Site p.X87_splice 0.35 TCGA-FR-A3YN-06 7 136699843 136699843 G A CHRM2 Missense_Mutation p.M77I 0.62 deleterious(0) probably_damaging(0.989) TCGA-FR-A3YN-06 7 141731519 141731519 C T MGAM Missense_Mutation p.P504S 0.54 deleterious(0.03) benign(0.116) TCGA-FR-A3YN-06 7 142139787 142139787 G A TRBV7-6 5'UTR 0.25 TCGA-FR-A3YN-06 7 142223960 142223960 C T TRBV11-1 Silent p.Q69Q 0.21 TCGA-FR-A3YN-06 7 143573514 143573514 G A FAM115A Missense_Mutation p.S63F 0.51 deleterious(0) possibly_damaging(0.759) TCGA-FR-A3YN-06 7 143807605 143807605 G A OR2A2 Missense_Mutation p.M310I 0.32 tolerated(0.29) benign(0.001) TCGA-FR-A3YN-06 7 148512065 148512065 G A EZH2 Missense_Mutation p.S538L 0.66 tolerated(0.07) benign(0.063) TCGA-FR-A3YN-06 7 150695528 150695528 C G NOS3 Silent p.G222G 0.60 TCGA-FR-A3YN-06 7 156556460 156556460 C T LMBR1 Silent p.L151L 0.57 TCGA-FR-A3YN-06 7 156759009 156759009 C A NOM1 Silent p.L693L 0.26 TCGA-FR-A3YN-06 7 27169167 27169167 C T HOXA4 Missense_Mutation p.E214K 0.38 deleterious(0) possibly_damaging(0.766) TCGA-FR-A3YN-06 7 30668173 30668173 C T GARS Intron 0.23 TCGA-FR-A3YN-06 7 32091172 32091172 G A PDE1C Intron 0.31 TCGA-FR-A3YN-06 7 34125496 34125496 G A BMPER Missense_Mutation p.G513R 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A3YN-06 7 43664182 43664182 C T STK17A Missense_Mutation p.P329L 0.34 tolerated(0.13) benign(0.006) TCGA-FR-A3YN-06 7 47880080 47880080 G A PKD1L1 Missense_Mutation p.S1844F 0.35 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YN-06 7 48007430 48007430 G A HUS1 Nonsense_Mutation p.Q245* 0.50 TCGA-FR-A3YN-06 7 50660513 50660513 C T GRB10 3'UTR 0.33 TCGA-FR-A3YN-06 7 6045617 6045617 G A PMS2 Silent p.V23V 0.58 TCGA-FR-A3YN-06 7 63720644 63720644 G A ZNF679 Missense_Mutation p.E29K 0.25 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YN-06 7 6797462 6797462 C T RSPH10B2 Missense_Mutation p.L52F 0.20 tolerated(0.5) benign(0.014) TCGA-FR-A3YN-06 7 72718005 72718005 G A NSUN5 Silent p.P321P 0.56 TCGA-FR-A3YN-06 7 73085492 73085492 C T VPS37D Missense_Mutation p.P181L 0.57 tolerated(0.13) benign(0.134) TCGA-FR-A3YN-06 7 80276127 80276127 G A CD36 Missense_Mutation p.G24D 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YN-06 7 81381466 81381466 C T HGF Missense_Mutation p.E199K 0.32 deleterious(0.01) probably_damaging(0.922) TCGA-FR-A3YN-06 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.23 unknown(0) TCGA-FR-A3YN-06 7 82583450 82583450 G A PCLO Silent p.I2273I 0.56 TCGA-FR-A3YN-06 7 82583745 82583745 G A PCLO Missense_Mutation p.S2175F 0.61 unknown(0) TCGA-FR-A3YN-06 7 82584960 82584960 A T PCLO Missense_Mutation p.I1770N 0.31 unknown(0) TCGA-FR-A3YN-06 7 87133570 87133570 T C ABCB1 Missense_Mutation p.K1278E 0.31 tolerated_low_confidence(0.09) benign(0.009) TCGA-FR-A3YN-06 7 98547413 98547413 C T TRRAP Missense_Mutation p.T1688I 0.66 benign(0.032) TCGA-FR-A3YN-06 8 101300387 101300387 T A RNF19A Missense_Mutation p.I6L 0.40 tolerated_low_confidence(0.68) benign(0) TCGA-FR-A3YN-06 8 103289399 103289399 A G UBR5 Missense_Mutation p.Y2104H 0.44 tolerated(0.26) possibly_damaging(0.885) TCGA-FR-A3YN-06 8 10470642 10470642 G A RP1L1 Silent p.S322S 0.17 TCGA-FR-A3YN-06 8 108264237 108264237 C T ANGPT1 Nonsense_Mutation p.W448* 0.50 TCGA-FR-A3YN-06 8 110131453 110131453 C T TRHR Silent p.L322L 0.27 TCGA-FR-A3YN-06 8 110131683 110131683 G A TRHR Silent p.%3D 0.27 TCGA-FR-A3YN-06 8 110424632 110424632 C T PKHD1L1 Missense_Mutation p.P742S 0.54 tolerated(0.4) benign(0.004) TCGA-FR-A3YN-06 8 130762252 130762252 G A GSDMC Silent p.L399L 0.28 TCGA-FR-A3YN-06 8 139158223 139158223 G A FAM135B Silent p.F1173F 0.10 TCGA-FR-A3YN-06 8 140631107 140631107 G A KCNK9 Silent p.I173I 0.45 TCGA-FR-A3YN-06 8 144620643 144620652 AACCAGCGAG - ZC3H3 Frame_Shift_Del p.S296* 0.08 TCGA-FR-A3YN-06 8 144947068 144947068 G A EPPK1 Silent p.A118A 0.13 TCGA-FR-A3YN-06 8 1581131 1581131 C T DLGAP2 Nonsense_Mutation p.Q497* 0.26 TCGA-FR-A3YN-06 8 41555585 41555585 C T ANK1 Silent p.V912V 0.46 TCGA-FR-A3YN-06 8 42012427 42012427 C T AP3M2 Silent p.V74V 0.24 TCGA-FR-A3YN-06 8 52232386 52232386 C A PXDNL 3'UTR 0.32 TCGA-FR-A3YN-06 8 63659497 63659497 G A NKAIN3 Missense_Mutation p.D94N 0.59 deleterious(0.02) probably_damaging(0.951) TCGA-FR-A3YN-06 8 6794288 6794288 G A DEFA4 Missense_Mutation p.S45F 0.22 tolerated(0.3) probably_damaging(0.993) TCGA-FR-A3YN-06 8 68111238 68111238 A G ARFGEF1 Silent p.F1827F 0.19 TCGA-FR-A3YN-06 8 69033271 69033271 G A PREX2 Silent p.R1237R 0.31 TCGA-FR-A3YN-06 8 69058575 69058575 C T PREX2 Missense_Mutation p.L1407F 0.24 deleterious(0) probably_damaging(0.994) TCGA-FR-A3YN-06 8 73849364 73849364 G A KCNB2 Missense_Mutation p.E592K 0.24 tolerated_low_confidence(0.14) benign(0.037) TCGA-FR-A3YN-06 8 77690514 77690514 C T ZFHX4 Missense_Mutation p.T1055I 0.25 benign(0.001) TCGA-FR-A3YN-06 8 82370629 82370629 C T FABP9 Missense_Mutation p.E130K 0.26 tolerated(0.07) benign(0.018) TCGA-FR-A3YN-06 8 87226572 87226572 T C SLC7A13 3'UTR 0.62 TCGA-FR-A3YN-06 8 88885802 88885802 G A DCAF4L2 Missense_Mutation p.A133V 0.25 tolerated(0.07) benign(0.339) TCGA-FR-A3YN-06 8 95423537 95423537 G A RAD54B Missense_Mutation p.S104L 0.69 tolerated(0.36) benign(0.003) TCGA-FR-A3YN-06 8 95523835 95523835 G A KIAA1429 Missense_Mutation p.H990Y 0.49 tolerated(0.06) probably_damaging(0.996) TCGA-FR-A3YN-06 9 100890919 100890919 G A CORO2A Silent p.I350I 0.30 TCGA-FR-A3YN-06 9 118997545 118997545 C T PAPPA Silent p.F787F 0.42 TCGA-FR-A3YN-06 9 120475859 120475859 G A TLR4 Missense_Mutation p.E485K 0.43 tolerated(0.05) benign(0.001) TCGA-FR-A3YN-06 9 123215756 123215756 G A CDK5RAP2 Missense_Mutation p.S924F 0.19 tolerated(0.39) possibly_damaging(0.831) TCGA-FR-A3YN-06 9 124751925 124751925 G A TTLL11 Missense_Mutation p.T363I 0.53 tolerated(0.07) benign(0.021) TCGA-FR-A3YN-06 9 125240020 125240020 G A OR1J1 Silent p.F62F 0.48 TCGA-FR-A3YN-06 9 125273405 125273405 G A OR1J2 Missense_Mutation p.D109N 0.47 tolerated_low_confidence(0.66) benign(0.008) TCGA-FR-A3YN-06 9 125551716 125551716 C T OR5C1 Missense_Mutation p.R169C 0.54 deleterious(0.02) probably_damaging(0.939) TCGA-FR-A3YN-06 9 127177167 127177167 G A PSMB7 Missense_Mutation p.P37L 0.15 deleterious(0) benign(0.38) TCGA-FR-A3YN-06 9 130155408 130155408 C T GARNL3 Missense_Mutation p.P973S 0.28 tolerated_low_confidence(0.33) benign(0) TCGA-FR-A3YN-06 9 130984863 130984863 C T DNM1 Silent p.F372F 0.53 TCGA-FR-A3YN-06 9 131885399 131885399 C T PPP2R4 Silent p.F66F 0.53 TCGA-FR-A3YN-06 9 136403521 136403521 A G ADAMTSL2 Missense_Mutation p.K95R 0.20 tolerated(0.07) benign(0.215) TCGA-FR-A3YN-06 9 139636463 139636463 A G LCN10 Missense_Mutation p.F43L 0.29 tolerated(0.5) benign(0.016) TCGA-FR-A3YN-06 9 139739778 139739778 C T C9orf172 Silent p.A304A 0.64 TCGA-FR-A3YN-06 9 139906979 139906979 G A ABCA2 Silent p.A1715A 0.34 TCGA-FR-A3YN-06 9 140201449 140201449 G A EXD3 Missense_Mutation p.P862S 0.42 tolerated(0.51) unknown(0) TCGA-FR-A3YN-06 9 21239422 21239422 G A IFNA14 Silent p.I171I 0.65 TCGA-FR-A3YN-06 9 21512115 21512115 G A MIR31 RNA 0.69 TCGA-FR-A3YN-06 9 34096763 34096763 G A DCAF12 Missense_Mutation p.S271F 0.71 deleterious(0) benign(0.365) TCGA-FR-A3YN-06 9 35044091 35044091 G A C9orf131 Missense_Mutation p.G489R 0.74 tolerated(0.72) possibly_damaging(0.877) TCGA-FR-A3YN-06 9 35819941 35819941 C T FAM221B Missense_Mutation p.D267N 0.59 tolerated(0.08) benign(0.168) TCGA-FR-A3YN-06 9 74360014 74360014 G A TMEM2 Silent p.A318A 0.52 TCGA-FR-A3YN-06 9 74838089 74838089 G A GDA Silent p.E220E 0.52 TCGA-FR-A3YN-06 9 77377029 77377029 G A TRPM6 Nonsense_Mutation p.Q1520* 0.28 TCGA-FR-A3YN-06 9 96024952 96024952 G A WNK2 Missense_Mutation p.E1121K 0.58 unknown(0) TCGA-FR-A3YN-06 9 96863862 96863862 C T PTPDC1 Silent p.S674S 0.25 TCGA-FR-A3YN-06 X 108619381 108619381 C T GUCY2F Missense_Mutation p.E1056K 0.87 deleterious(0.02) possibly_damaging(0.652) TCGA-FR-A3YN-06 X 109922646 109922646 G A CHRDL1 Silent p.L388L 0.81 TCGA-FR-A3YN-06 X 111090512 111090512 C T TRPC5 Silent p.L510L 0.91 TCGA-FR-A3YN-06 X 114141468 114141468 A G HTR2C Silent p.R289R 0.05 TCGA-FR-A3YN-06 X 125686526 125686526 G C DCAF12L1 Missense_Mutation p.S22R 0.89 tolerated(0.16) possibly_damaging(0.779) TCGA-FR-A3YN-06 X 12937721 12937721 G A TLR8 Missense_Mutation p.E188K 0.88 tolerated(0.16) benign(0.001) TCGA-FR-A3YN-06 X 134483189 134483189 C T ZNF449 Missense_Mutation p.P170L 0.84 tolerated(0.32) benign(0.015) TCGA-FR-A3YN-06 X 21627553 21627553 G A CNKSR2 Missense_Mutation p.G837E 0.82 tolerated(0.61) benign(0.009) TCGA-FR-A3YN-06 X 23019338 23019338 C T DDX53 Silent p.P388P 0.84 TCGA-FR-A3YN-06 X 2407648 2407648 G A ZBED1 Silent p.I371I 0.67 TCGA-FR-A3YN-06 X 27999379 27999379 C T DCAF8L1 Missense_Mutation p.E25K 0.88 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-FR-A3YN-06 X 78216948 78216948 G A P2RY10 Missense_Mutation p.E311K 0.87 deleterious(0.02) benign(0.214) TCGA-FR-A3YN-06 Y 14952450 14952450 A G USP9Y Missense_Mutation p.M2000V 0.70 deleterious(0.01) benign(0.066) TCGA-FR-A3YO-06 10 102256891 102256891 C T SEC31B Splice_Site p.X712_splice 0.16 TCGA-FR-A3YO-06 10 106737219 106737219 G A SORCS3 Missense_Mutation p.D308N 0.24 tolerated(0.14) benign(0.056) TCGA-FR-A3YO-06 10 106976804 106976804 G A SORCS3 Silent p.A886A 0.42 TCGA-FR-A3YO-06 10 122278351 122278351 C T PPAPDC1A Missense_Mutation p.S88F 0.14 deleterious(0) probably_damaging(0.947) TCGA-FR-A3YO-06 10 123298225 123298225 C T FGFR2 Missense_Mutation p.R210Q 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A3YO-06 10 124908153 124908153 C T HMX2 Missense_Mutation p.P87S 0.20 tolerated_low_confidence(0.55) benign(0.002) TCGA-FR-A3YO-06 10 126523218 126523218 C T FAM175B Missense_Mutation p.S309F 0.21 deleterious(0) possibly_damaging(0.861) TCGA-FR-A3YO-06 10 24873482 24873482 G A ARHGAP21 Silent p.S1912S 0.16 TCGA-FR-A3YO-06 10 25839962 25839962 C T GPR158 Missense_Mutation p.R488C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 10 26310490 26310490 C T MYO3A Missense_Mutation p.S215F 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 10 26312962 26312962 C T MYO3A Missense_Mutation p.P248L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 10 27462185 27462185 C T MASTL Missense_Mutation p.H755Y 0.31 deleterious(0) probably_damaging(0.962) TCGA-FR-A3YO-06 10 38120853 38120853 G A ZNF248 Missense_Mutation p.S477L 0.19 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 10 43694597 43694597 C T RASGEF1A Missense_Mutation p.D299N 0.46 deleterious(0) possibly_damaging(0.678) TCGA-FR-A3YO-06 10 50122269 50122269 C T LRRC18 5'UTR 0.12 TCGA-FR-A3YO-06 10 51555754 51555754 G A MSMB Silent p.V9V 0.22 TCGA-FR-A3YO-06 10 55582534 55582534 T C PCDH15 Missense_Mutation p.E1653G 0.20 tolerated_low_confidence(0.07) benign(0.045) TCGA-FR-A3YO-06 10 6549450 6549450 C T PRKCQ Silent p.L109L 0.36 TCGA-FR-A3YO-06 10 72541687 72541687 G A TBATA Silent p.F49F 0.36 TCGA-FR-A3YO-06 10 81701244 81701244 C T SFTPD Missense_Mutation p.G193R 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 10 84745001 84745001 C T NRG3 Silent p.I577I 0.37 TCGA-FR-A3YO-06 10 88994203 88994203 G A NUTM2A Nonsense_Mutation p.W792* 0.15 TCGA-FR-A3YO-06 10 88994204 88994204 G A NUTM2A Nonsense_Mutation p.W792* 0.16 TCGA-FR-A3YO-06 10 94836372 94836372 G C CYP26A1 Silent p.G357G 0.19 TCGA-FR-A3YO-06 10 96967066 96967066 G A C10orf129 Missense_Mutation p.A169T 0.18 deleterious(0.03) benign(0.039) TCGA-FR-A3YO-06 11 101359740 101359740 G A TRPC6 Silent p.F407F 0.08 TCGA-FR-A3YO-06 11 101362289 101362289 T A TRPC6 Nonsense_Mutation p.K376* 0.53 TCGA-FR-A3YO-06 11 10506525 10506525 G A AMPD3 Missense_Mutation p.D259N 0.12 tolerated(0.25) probably_damaging(0.994) TCGA-FR-A3YO-06 11 107535993 107535993 C T ELMOD1 3'UTR 0.06 TCGA-FR-A3YO-06 11 10783571 10783571 C T CTR9 Silent p.N273N 0.15 TCGA-FR-A3YO-06 11 108381927 108381927 C T EXPH5 Missense_Mutation p.G1436E 0.09 tolerated(1) benign(0.008) TCGA-FR-A3YO-06 11 111865791 111865791 C T DIXDC1 Missense_Mutation p.P495S 0.11 tolerated(0.52) benign(0.007) TCGA-FR-A3YO-06 11 113934508 113934508 C T ZBTB16 Silent p.S162S 0.10 TCGA-FR-A3YO-06 11 116692178 116692178 C T APOA4 Missense_Mutation p.G199E 0.12 tolerated(0.33) benign(0.098) TCGA-FR-A3YO-06 11 121023744 121023744 C T TECTA Silent p.I1420I 0.20 TCGA-FR-A3YO-06 11 123887086 123887086 G A OR10G4 Missense_Mutation p.G269R 0.08 tolerated(0.19) benign(0.03) TCGA-FR-A3YO-06 11 123908863 123908863 G A OR10G7 Silent p.F282F 0.09 TCGA-FR-A3YO-06 11 123909164 123909164 G A OR10G7 Missense_Mutation p.P182L 0.10 deleterious(0.02) probably_damaging(0.911) TCGA-FR-A3YO-06 11 128680810 128680810 G A FLI1 Missense_Mutation p.G429E 0.04 deleterious(0.02) benign(0.158) TCGA-FR-A3YO-06 11 129817091 129817091 G A PRDM10 Silent p.L157L 0.59 TCGA-FR-A3YO-06 11 18751011 18751011 G A PTPN5 Silent p.L531L 0.27 TCGA-FR-A3YO-06 11 20129301 20129301 C T NAV2 Silent p.L2370L 0.17 TCGA-FR-A3YO-06 11 20622698 20622698 G A SLC6A5 Missense_Mutation p.M9I 0.35 deleterious_low_confidence(0.01) benign(0.057) TCGA-FR-A3YO-06 11 209910 209910 C T RIC8A Silent p.L212L 0.44 TCGA-FR-A3YO-06 11 22281076 22281076 C T ANO5 Silent p.V473V 0.06 TCGA-FR-A3YO-06 11 22396376 22396376 C T SLC17A6 Silent p.L373L 0.26 TCGA-FR-A3YO-06 11 26719969 26719969 A G SLC5A12 Missense_Mutation p.I312T 0.14 deleterious(0) possibly_damaging(0.745) TCGA-FR-A3YO-06 11 27078759 27078759 A C BBOX1 Silent p.T77T 0.15 TCGA-FR-A3YO-06 11 30516869 30516869 C T MPPED2 Silent p.K170K 0.19 TCGA-FR-A3YO-06 11 32949635 32949635 C T QSER1 Silent p.L21L 0.14 TCGA-FR-A3YO-06 11 4593483 4593483 G A C11orf40 Missense_Mutation p.S117F 0.11 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FR-A3YO-06 11 4825495 4825495 G A OR52R1 Missense_Mutation p.A39V 0.15 tolerated(0.96) benign(0.001) TCGA-FR-A3YO-06 11 48286079 48286079 C T OR4X1 Silent p.L223L 0.12 TCGA-FR-A3YO-06 11 48510893 48510893 G A OR4A47 Silent p.L183L 0.31 TCGA-FR-A3YO-06 11 4870103 4870103 G A OR51S1 Silent p.I112I 0.10 TCGA-FR-A3YO-06 11 4903793 4903793 C T OR51T1 Silent p.L249L 0.25 TCGA-FR-A3YO-06 11 49207395 49207395 G A FOLH1 Nonsense_Mutation p.Q218* 0.16 TCGA-FR-A3YO-06 11 4945447 4945447 G A OR51G1 Silent p.I41I 0.30 TCGA-FR-A3YO-06 11 5010961 5010961 C T MMP26 Silent p.F61F 0.12 TCGA-FR-A3YO-06 11 51516172 51516172 G A OR4C46 Silent p.R297R 0.21 TCGA-FR-A3YO-06 11 55032689 55032689 T C TRIM48 Missense_Mutation p.C120R 0.16 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YO-06 11 5510515 5510515 C T OR52D1 Silent p.A193A 0.17 TCGA-FR-A3YO-06 11 55541374 55541374 G A OR5D13 Missense_Mutation p.G154E 0.18 deleterious(0.01) possibly_damaging(0.742) TCGA-FR-A3YO-06 11 55563223 55563223 C T OR5D14 Silent p.F64F 0.29 TCGA-FR-A3YO-06 11 55606710 55606710 C T OR5D16 Silent p.L161L 0.11 TCGA-FR-A3YO-06 11 55890126 55890126 C T OR8H3 Missense_Mutation p.S93F 0.14 deleterious(0) possibly_damaging(0.635) TCGA-FR-A3YO-06 11 55890553 55890553 G A OR8H3 Silent p.Q235Q 0.24 TCGA-FR-A3YO-06 11 56258333 56258333 C T OR5M8 Missense_Mutation p.E172K 0.13 tolerated(0.79) benign(0.033) TCGA-FR-A3YO-06 11 57310661 57310661 G A SMTNL1 Silent p.R200R 0.33 TCGA-FR-A3YO-06 11 57886368 57886368 G A OR9I1 Silent p.P183P 0.32 TCGA-FR-A3YO-06 11 57983038 57983038 C T OR1S1 Silent p.F274F 0.14 TCGA-FR-A3YO-06 11 5799078 5799078 G A OR52N5 Missense_Mutation p.P263S 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A3YO-06 11 57996058 57996058 G A OR10Q1 Missense_Mutation p.S97L 0.13 deleterious(0) benign(0.102) TCGA-FR-A3YO-06 11 5841841 5841841 G A OR52N2 Silent p.K92K 0.11 TCGA-FR-A3YO-06 11 5906348 5906348 C T OR52E4 Missense_Mutation p.L276F 0.33 tolerated(0.11) probably_damaging(0.987) TCGA-FR-A3YO-06 11 59368785 59368785 G A OSBP Silent p.I365I 0.06 TCGA-FR-A3YO-06 11 6007900 6007900 G A OR52L1 Silent p.I87I 0.26 TCGA-FR-A3YO-06 11 60638743 60638743 C T ZP1 Silent p.I356I 0.27 TCGA-FR-A3YO-06 11 60638744 60638744 C T ZP1 Nonsense_Mutation p.Q357* 0.25 TCGA-FR-A3YO-06 11 61291907 61291907 G A SYT7 Silent p.I315I 0.21 TCGA-FR-A3YO-06 11 6191208 6191208 G A OR52B2 Silent p.L117L 0.10 TCGA-FR-A3YO-06 11 63756099 63756099 G A OTUB1 Intron 0.17 TCGA-FR-A3YO-06 11 64568397 64568397 G A MAP4K2 Missense_Mutation p.P213S 0.15 deleterious(0) probably_damaging(0.977) TCGA-FR-A3YO-06 11 64604452 64604452 C T CDC42BPG Silent p.L415L 0.12 TCGA-FR-A3YO-06 11 64880969 64880969 C T TM7SF2 Missense_Mutation p.P169L 0.20 tolerated(0.71) benign(0.008) TCGA-FR-A3YO-06 11 65273607 65273607 C T MALAT1 RNA 0.11 TCGA-FR-A3YO-06 11 68216503 68216503 C T LRP5 Missense_Mutation p.P1605S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-FR-A3YO-06 11 70319138 70319138 C T SHANK2 Missense_Mutation p.E1797K 0.14 deleterious(0.01) possibly_damaging(0.621) TCGA-FR-A3YO-06 11 7079044 7079044 T C NLRP14 Silent p.L810L 0.23 TCGA-FR-A3YO-06 11 71671826 71671826 C T RNF121 Silent p.H44H 0.08 TCGA-FR-A3YO-06 11 73073478 73073478 G A ARHGEF17 Silent p.R1565R 0.52 TCGA-FR-A3YO-06 11 73366936 73366936 T C PLEKHB1 Missense_Mutation p.V160A 0.11 tolerated(0.55) benign(0.032) TCGA-FR-A3YO-06 11 73638353 73638353 C T PAAF1 Silent p.I375I 0.25 TCGA-FR-A3YO-06 11 76257161 76257161 G A C11orf30 Silent p.A1198A 0.17 TCGA-FR-A3YO-06 11 76886494 76886494 C T MYO7A Missense_Mutation p.T724I 0.45 deleterious(0) possibly_damaging(0.868) TCGA-FR-A3YO-06 11 76893038 76893038 G A MYO7A Silent p.L982L 0.07 TCGA-FR-A3YO-06 11 7718278 7718278 G A OVCH2 Missense_Mutation p.H332Y 0.43 tolerated(1) benign(0.004) TCGA-FR-A3YO-06 11 77934677 77934677 C A GAB2 Missense_Mutation p.D450Y 0.09 deleterious(0) probably_damaging(0.911) TCGA-FR-A3YO-06 11 78443390 78443390 C T TENM4 Missense_Mutation p.E1037K 0.39 deleterious(0.03) benign(0.423) TCGA-FR-A3YO-06 11 8060506 8060506 C T TUB Missense_Mutation p.P29L 0.31 deleterious_low_confidence(0.01) benign(0.027) TCGA-FR-A3YO-06 11 93528227 93528227 G A MED17 Splice_Site p.X338_splice 0.06 TCGA-FR-A3YO-06 11 93528228 93528228 T A MED17 Splice_Site p.X338_splice 0.06 TCGA-FR-A3YO-06 11 94113387 94113387 G A GPR83 Silent p.L400L 0.51 TCGA-FR-A3YO-06 11 95568590 95568590 T C MTMR2 Missense_Mutation p.E599G 0.06 deleterious(0.02) benign(0.006) TCGA-FR-A3YO-06 12 100166721 100166721 C T ANKS1B Silent p.G369G 0.08 TCGA-FR-A3YO-06 12 100166735 100166735 C T ANKS1B Missense_Mutation p.E365K 0.29 tolerated(0.05) benign(0.008) TCGA-FR-A3YO-06 12 101504229 101504229 G A ANO4 Missense_Mutation p.A698T 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 12 104081964 104081964 G A STAB2 Missense_Mutation p.E1006K 0.47 tolerated(0.06) benign(0.016) TCGA-FR-A3YO-06 12 104190780 104190780 G A NT5DC3 Silent p.F215F 0.15 TCGA-FR-A3YO-06 12 10783821 10783821 C G STYK1 Missense_Mutation p.V92L 0.12 tolerated(0.22) benign(0.019) TCGA-FR-A3YO-06 12 10856686 10856686 A G YBX3 Missense_Mutation p.V281A 0.20 tolerated(0.1) benign(0.009) TCGA-FR-A3YO-06 12 11035043 11035043 C T PRH1 Missense_Mutation p.G98R 0.09 deleterious_low_confidence(0) unknown(0) TCGA-FR-A3YO-06 12 110778625 110778625 C T ATP2A2 Silent p.F641F 0.11 TCGA-FR-A3YO-06 12 110813855 110813855 G A ANAPC7 Intron 0.42 TCGA-FR-A3YO-06 12 110813857 110813857 A T ANAPC7 Intron 0.44 TCGA-FR-A3YO-06 12 112589821 112589821 G A TRAFD1 Missense_Mutation p.R499Q 0.43 tolerated(0.17) benign(0.041) TCGA-FR-A3YO-06 12 113357440 113357440 G A OAS1 Missense_Mutation p.R396K 0.46 deleterious_low_confidence(0) unknown(0) TCGA-FR-A3YO-06 12 113384616 113384616 C T OAS3 Silent p.F235F 0.41 TCGA-FR-A3YO-06 12 11506297 11506297 C T PRB1 Missense_Mutation p.G114E 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-FR-A3YO-06 12 117964916 117964916 C T KSR2 Missense_Mutation p.G604E 0.11 tolerated(0.49) benign(0.003) TCGA-FR-A3YO-06 12 120260703 120260703 G A CIT Silent p.G344G 0.24 TCGA-FR-A3YO-06 12 121435391 121435391 C T HNF1A Missense_Mutation p.P475L 0.25 deleterious(0) possibly_damaging(0.718) TCGA-FR-A3YO-06 12 122218799 122218799 C T RHOF Silent p.L150L 0.12 TCGA-FR-A3YO-06 12 122218820 122218820 C T RHOF Silent p.R143R 0.11 TCGA-FR-A3YO-06 12 123102893 123102893 C T KNTC1 Missense_Mutation p.P2012S 0.12 tolerated(0.15) probably_damaging(0.999) TCGA-FR-A3YO-06 12 123265710 123265710 G A CCDC62 Splice_Site p.X77_splice 0.12 TCGA-FR-A3YO-06 12 123344339 123344339 C T HIP1R Silent p.R809R 0.45 TCGA-FR-A3YO-06 12 123351714 123351714 C T VPS37B Silent p.Q269Q 0.41 TCGA-FR-A3YO-06 12 125396988 125396988 C T UBC Missense_Mutation p.E444K 0.07 tolerated(0.11) benign(0.026) TCGA-FR-A3YO-06 12 125834288 125834288 C T TMEM132B Missense_Mutation p.P115S 0.40 tolerated(0.44) benign(0.234) TCGA-FR-A3YO-06 12 14927470 14927470 G A H2AFJ Silent p.A22A 0.12 TCGA-FR-A3YO-06 12 14976653 14976653 C T C12orf60 3'UTR 0.15 TCGA-FR-A3YO-06 12 15038751 15038751 G A MGP 5'UTR 0.35 TCGA-FR-A3YO-06 12 15038752 15038752 G A MGP 5'UTR 0.36 TCGA-FR-A3YO-06 12 18838568 18838568 G A PLCZ1 Intron 0.10 TCGA-FR-A3YO-06 12 18891977 18891977 G A CAPZA3 Missense_Mutation p.D259N 0.42 tolerated(0.09) possibly_damaging(0.817) TCGA-FR-A3YO-06 12 20803421 20803421 C T PDE3A Missense_Mutation p.R938C 0.39 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YO-06 12 21054287 21054287 G A SLCO1B3 Missense_Mutation p.G584E 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 12 21998755 21998755 C T ABCC9 Missense_Mutation p.E960K 0.06 tolerated(0.08) possibly_damaging(0.823) TCGA-FR-A3YO-06 12 27787906 27787906 T A PPFIBP1 Missense_Mutation p.M43K 0.13 deleterious(0.04) possibly_damaging(0.904) TCGA-FR-A3YO-06 12 33560122 33560122 C T SYT10 Missense_Mutation p.E227K 0.20 tolerated(0.26) benign(0.073) TCGA-FR-A3YO-06 12 40702500 40702500 T C LRRK2 Splice_Site p.X1397_splice 0.06 TCGA-FR-A3YO-06 12 4409047 4409047 G A CCND2 Missense_Mutation p.E248K 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 12 4554514 4554514 C T FGF6 Missense_Mutation p.E75K 0.10 deleterious(0.05) probably_damaging(0.98) TCGA-FR-A3YO-06 12 46242662 46242662 C T ARID2 Nonsense_Mutation p.R542* 0.34 TCGA-FR-A3YO-06 12 4700407 4700407 G A DYRK4 Missense_Mutation p.D21N 0.13 deleterious(0.04) benign(0.01) TCGA-FR-A3YO-06 12 47168901 47168901 G A SLC38A4 Silent p.I410I 0.40 TCGA-FR-A3YO-06 12 4854773 4854773 G A GALNT8 Missense_Mutation p.D347N 0.11 tolerated(0.19) possibly_damaging(0.585) TCGA-FR-A3YO-06 12 4920414 4920414 G A KCNA6 Missense_Mutation p.D403N 0.39 tolerated(0.37) possibly_damaging(0.54) TCGA-FR-A3YO-06 12 49427309 49427309 G C KMT2D Missense_Mutation p.R3727G 0.13 probably_damaging(0.931) TCGA-FR-A3YO-06 12 5154895 5154895 G A KCNA5 Missense_Mutation p.D528N 0.37 tolerated(0.1) benign(0.253) TCGA-FR-A3YO-06 12 52710294 52710294 C T KRT83 Missense_Mutation p.M333I 0.15 tolerated(0.19) benign(0.005) TCGA-FR-A3YO-06 12 53853069 53853069 C A PCBP2 Missense_Mutation p.S86Y 0.28 tolerated(0.12) probably_damaging(0.947) TCGA-FR-A3YO-06 12 55025540 55025540 C T LACRT Missense_Mutation p.G113R 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FR-A3YO-06 12 55794778 55794778 C T OR6C65 Missense_Mutation p.P156S 0.42 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FR-A3YO-06 12 56428411 56428411 G A IKZF4 Missense_Mutation p.G352S 0.10 tolerated(1) benign(0.005) TCGA-FR-A3YO-06 12 56815907 56815907 G A TIMELESS Missense_Mutation p.A836V 0.21 tolerated(0.07) benign(0.219) TCGA-FR-A3YO-06 12 57114410 57114410 G A NACA Missense_Mutation p.P302S 0.31 tolerated_low_confidence(0.58) benign(0) TCGA-FR-A3YO-06 12 57573152 57573152 C T LRP1 Silent p.I1593I 0.18 TCGA-FR-A3YO-06 12 57599031 57599031 C T LRP1 Silent p.I3778I 0.10 TCGA-FR-A3YO-06 12 57908737 57908737 G A MARS Silent p.R700R 0.47 TCGA-FR-A3YO-06 12 58121941 58121941 C T AGAP2-AS1 3'UTR 0.40 TCGA-FR-A3YO-06 12 64790381 64790381 G A RPS11P6 RNA 0.21 TCGA-FR-A3YO-06 12 6765953 6765953 G A ING4 Missense_Mutation p.L17F 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A3YO-06 12 68715390 68715390 G A MDM1 Missense_Mutation p.R274C 0.64 deleterious(0.01) possibly_damaging(0.466) TCGA-FR-A3YO-06 12 70953166 70953166 G A PTPRB Silent p.S1557S 0.27 TCGA-FR-A3YO-06 12 70954506 70954506 C T PTPRB Nonsense_Mutation p.W1459* 0.36 TCGA-FR-A3YO-06 12 71077943 71077943 C T PTPRR Silent p.V487V 0.23 TCGA-FR-A3YO-06 12 71158482 71158482 C T PTPRR Missense_Mutation p.G145E 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A3YO-06 12 7303236 7303236 C T CLSTN3 Missense_Mutation p.S781F 0.23 tolerated(0.06) possibly_damaging(0.661) TCGA-FR-A3YO-06 12 7639241 7639241 G A CD163 Missense_Mutation p.S771F 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-FR-A3YO-06 12 77244685 77244685 C T ZDHHC17 Missense_Mutation p.R607C 0.15 deleterious(0) probably_damaging(0.973) TCGA-FR-A3YO-06 12 7848075 7848075 G A GDF3 Missense_Mutation p.R84C 0.11 deleterious(0) probably_damaging(0.977) TCGA-FR-A3YO-06 12 7945676 7945676 G A NANOG Silent p.K94K 0.38 TCGA-FR-A3YO-06 12 81657121 81657121 G A PPFIA2 Missense_Mutation p.P1202S 0.29 deleterious_low_confidence(0.01) benign(0.333) TCGA-FR-A3YO-06 12 8205520 8205520 C T FOXJ2 3'UTR 0.40 TCGA-FR-A3YO-06 12 8688795 8688795 G A CLEC4E Missense_Mutation p.L127F 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A3YO-06 12 95604090 95604090 G A FGD6 Missense_Mutation p.R324C 0.22 tolerated_low_confidence(0.13) benign(0.009) TCGA-FR-A3YO-06 12 980483 980483 C T WNK1 Missense_Mutation p.S731L 0.10 tolerated(0.68) unknown(0) TCGA-FR-A3YO-06 12 994623 994623 C T WNK1 Silent p.S1551S 0.12 TCGA-FR-A3YO-06 12 994771 994771 C T WNK1 Missense_Mutation p.P1601S 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.842) TCGA-FR-A3YO-06 13 103718274 103718274 C T SLC10A2 Missense_Mutation p.G109E 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 13 109535458 109535458 C T MYO16 Missense_Mutation p.P471S 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 13 110815834 110815834 C T COL4A1 Missense_Mutation p.E1409K 0.11 probably_damaging(0.973) TCGA-FR-A3YO-06 13 110845216 110845216 G A COL4A1 Missense_Mutation p.R476W 0.25 benign(0.158) TCGA-FR-A3YO-06 13 111141831 111141831 G A COL4A2 Missense_Mutation p.E1083K 0.10 possibly_damaging(0.635) TCGA-FR-A3YO-06 13 23853581 23853581 G A SGCG Missense_Mutation p.E157K 0.11 tolerated(0.07) benign(0.012) TCGA-FR-A3YO-06 13 26959389 26959389 C T CDK8 Missense_Mutation p.P186S 0.11 tolerated(0.09) possibly_damaging(0.574) TCGA-FR-A3YO-06 13 29608132 29608132 G A MTUS2 Silent p.L782L 0.12 TCGA-FR-A3YO-06 13 35630155 35630155 G A NBEA Missense_Mutation p.M327I 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A3YO-06 13 43788034 43788034 G C ENOX1 3'UTR 0.11 TCGA-FR-A3YO-06 13 52684496 52684496 A G NEK5 Silent p.G149G 0.27 TCGA-FR-A3YO-06 13 58208369 58208369 G A PCDH17 Silent p.L563L 0.13 TCGA-FR-A3YO-06 13 76432209 76432209 C T LMO7 3'UTR 0.20 TCGA-FR-A3YO-06 13 84455039 84455039 G A SLITRK1 Missense_Mutation p.P202S 0.25 tolerated(0.32) benign(0.002) TCGA-FR-A3YO-06 13 84455421 84455421 G A SLITRK1 Silent p.F74F 0.09 TCGA-FR-A3YO-06 13 94482600 94482600 G A GPC6 Silent p.R171R 0.12 TCGA-FR-A3YO-06 13 99483948 99483948 C T DOCK9 Silent p.T1446T 0.30 TCGA-FR-A3YO-06 14 101459613 101459613 G A SNORD114-31 RNA 0.16 TCGA-FR-A3YO-06 14 105205679 105205679 G A ADSSL1 Missense_Mutation p.E168K 0.24 tolerated(0.27) possibly_damaging(0.629) TCGA-FR-A3YO-06 14 106109827 106109827 G A IGHG2 Missense_Mutation p.P232S 0.23 deleterious(0) probably_damaging(0.94) TCGA-FR-A3YO-06 14 106691977 106691977 C T IGHV3-21 Missense_Mutation p.G16D 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.632) TCGA-FR-A3YO-06 14 106815992 106815992 C T IGHV3-33 Silent p.G27G 0.09 TCGA-FR-A3YO-06 14 107170364 107170364 C T IGHV1-69 Missense_Mutation p.D2N 0.07 deleterious(0.02) probably_damaging(0.984) TCGA-FR-A3YO-06 14 21167970 21167970 G A RNASE4 Missense_Mutation p.G147D 0.29 deleterious(0) benign(0.098) TCGA-FR-A3YO-06 14 22192442 22192442 G A TRAV3 Missense_Mutation p.D73N 0.28 tolerated(1) benign(0.012) TCGA-FR-A3YO-06 14 22217771 22217771 T C TRAV5 Missense_Mutation p.I41T 0.29 deleterious(0) probably_damaging(0.962) TCGA-FR-A3YO-06 14 22315350 22315350 G A TRAV8-2 Silent p.T96T 0.15 TCGA-FR-A3YO-06 14 23522723 23522723 G A CDH24 Missense_Mutation p.S403F 0.19 deleterious(0.02) benign(0.014) TCGA-FR-A3YO-06 14 23887475 23887475 C T MYH7 Nonsense_Mutation p.W1371* 0.09 TCGA-FR-A3YO-06 14 24805430 24805430 G A RIPK3 Missense_Mutation p.P503L 0.28 tolerated_low_confidence(0.24) benign(0.001) TCGA-FR-A3YO-06 14 26917300 26917300 G A NOVA1 Silent p.F463F 0.25 TCGA-FR-A3YO-06 14 31354660 31354660 G A COCH Missense_Mutation p.G265E 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 14 34269257 34269257 G A NPAS3 Missense_Mutation p.D582N 0.14 deleterious(0.02) probably_damaging(0.956) TCGA-FR-A3YO-06 14 55836455 55836455 G A ATG14 Missense_Mutation p.S454F 0.16 tolerated(0.05) benign(0.054) TCGA-FR-A3YO-06 14 62462985 62462985 C T SYT16 Missense_Mutation p.S83F 0.16 tolerated_low_confidence(0.14) benign(0.003) TCGA-FR-A3YO-06 14 64954158 64954158 G A ZBTB25 Missense_Mutation p.S264F 0.13 deleterious(0) possibly_damaging(0.828) TCGA-FR-A3YO-06 14 70713849 70713849 C T ADAM21P1 RNA 0.22 TCGA-FR-A3YO-06 14 75330509 75330509 G A PROX2 Missense_Mutation p.P10L 0.33 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-FR-A3YO-06 14 77709246 77709246 G A TMEM63C Nonsense_Mutation p.W396* 0.18 TCGA-FR-A3YO-06 14 92268655 92268655 G A TC2N Missense_Mutation p.P138S 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-FR-A3YO-06 14 93684979 93684979 C T UBR7 Silent p.L236L 0.15 TCGA-FR-A3YO-06 14 94046614 94046614 G A UNC79 Silent p.K674K 0.29 TCGA-FR-A3YO-06 14 95030428 95030428 G A SERPINA4 Silent p.K203K 0.31 TCGA-FR-A3YO-06 15 102201934 102201934 C T TARSL2 Missense_Mutation p.E685K 0.14 deleterious(0) probably_damaging(0.983) TCGA-FR-A3YO-06 15 102346709 102346709 C T OR4F6 Missense_Mutation p.P263S 0.17 tolerated_low_confidence(0.12) benign(0.032) TCGA-FR-A3YO-06 15 20489461 20489461 C T CHEK2P2 RNA 0.04 TCGA-FR-A3YO-06 15 22383340 22383340 C T OR4N4 Missense_Mutation p.R290C 0.05 deleterious(0.02) benign(0.019) TCGA-FR-A3YO-06 15 25299361 25299361 C T SNORD116-2 RNA 0.17 TCGA-FR-A3YO-06 15 25327838 25327838 C T SNORD116-18 5'Flank 0.10 TCGA-FR-A3YO-06 15 25427579 25427579 A G SNORD115-6 3'Flank 0.06 TCGA-FR-A3YO-06 15 25449569 25449569 G A SNORD115-19 RNA 0.25 TCGA-FR-A3YO-06 15 25460699 25460699 G A SNORD115-25 RNA 0.15 TCGA-FR-A3YO-06 15 25468246 25468246 C T SNORD115-27 3'Flank 0.11 TCGA-FR-A3YO-06 15 27772685 27772685 C T GABRG3 Silent p.F324F 0.12 TCGA-FR-A3YO-06 15 31779421 31779421 C T OTUD7A Nonsense_Mutation p.W442* 0.29 TCGA-FR-A3YO-06 15 34150077 34150077 G A RYR3 Missense_Mutation p.D4702N 0.06 benign(0.093) TCGA-FR-A3YO-06 15 34647846 34647846 G A NUTM1 Missense_Mutation p.G518E 0.25 deleterious(0.03) benign(0.311) TCGA-FR-A3YO-06 15 40661749 40661749 C T DISP2 Missense_Mutation p.R1146C 0.11 deleterious(0) possibly_damaging(0.906) TCGA-FR-A3YO-06 15 42059574 42059574 G A MGA 3'UTR 0.10 TCGA-FR-A3YO-06 15 43044895 43044895 C T TTBK2 Missense_Mutation p.G850E 0.12 tolerated_low_confidence(0.68) benign(0.001) TCGA-FR-A3YO-06 15 43762074 43762074 G A TP53BP1 Silent p.S457S 0.25 TCGA-FR-A3YO-06 15 43896935 43896935 G A STRC Missense_Mutation p.S1347F 0.27 tolerated(0.07) possibly_damaging(0.632) TCGA-FR-A3YO-06 15 44198084 44198084 G A FRMD5 Missense_Mutation p.P165S 0.12 tolerated(0.08) probably_damaging(0.975) TCGA-FR-A3YO-06 15 45706869 45706869 C T SPATA5L1 Missense_Mutation p.T512I 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 15 48797304 48797304 C T FBN1 Silent p.G626G 0.24 TCGA-FR-A3YO-06 15 48797305 48797305 C T FBN1 Missense_Mutation p.G626E 0.23 probably_damaging(0.999) TCGA-FR-A3YO-06 15 52534395 52534395 T A MYO5C Silent p.A802A 0.12 TCGA-FR-A3YO-06 15 62255041 62255041 G A VPS13C Silent p.S1114S 0.07 TCGA-FR-A3YO-06 15 66169674 66169674 C T RAB11A Silent p.V15V 0.21 TCGA-FR-A3YO-06 15 70959221 70959221 C T UACA Missense_Mutation p.E1268K 0.27 deleterious(0.05) benign(0.001) TCGA-FR-A3YO-06 15 72502751 72502751 G A PKM Silent p.Y105Y 0.26 TCGA-FR-A3YO-06 15 75108809 75108809 C T LMAN1L Silent p.V124V 0.26 TCGA-FR-A3YO-06 15 75692404 75692404 G A SIN3A Missense_Mutation p.R611C 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 15 77907872 77907872 A T LINGO1 Missense_Mutation p.L126H 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 15 81218086 81218086 G A KIAA1199 Missense_Mutation p.D804N 0.15 tolerated(0.17) benign(0.123) TCGA-FR-A3YO-06 15 83331464 83331464 G A AP3B2 Nonsense_Mutation p.Q920* 0.21 TCGA-FR-A3YO-06 15 85411769 85411769 G A ALPK3 3'UTR 0.18 TCGA-FR-A3YO-06 15 86807734 86807734 C T AGBL1 Silent p.S398S 0.15 TCGA-FR-A3YO-06 15 88522583 88522583 C T NTRK3 Intron 0.28 TCGA-FR-A3YO-06 15 88726698 88726698 G A NTRK3 Missense_Mutation p.R116W 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-FR-A3YO-06 15 89869877 89869877 G A POLG Missense_Mutation p.P560S 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 15 92981719 92981719 C T ST8SIA2 Missense_Mutation p.L143F 0.28 probably_damaging(0.928) TCGA-FR-A3YO-06 15 99511701 99511701 C T PGPEP1L 3'UTR 0.26 TCGA-FR-A3YO-06 16 14980716 14980716 C T NOMO1 Silent p.G1107G 0.15 TCGA-FR-A3YO-06 16 1537489 1537489 C T PTX4 Silent p.R203R 0.16 TCGA-FR-A3YO-06 16 1544335 1544335 C T TELO2 Missense_Mutation p.A18V 0.16 tolerated(0.2) benign(0) TCGA-FR-A3YO-06 16 16286769 16286769 G A ABCC6 Missense_Mutation p.P450L 0.16 deleterious(0.01) benign(0.071) TCGA-FR-A3YO-06 16 19047137 19047137 G A TMC7 Missense_Mutation p.E333K 0.23 deleterious(0.01) possibly_damaging(0.619) TCGA-FR-A3YO-06 16 19628026 19628026 C T C16orf62 Nonsense_Mutation p.Q463* 0.18 TCGA-FR-A3YO-06 16 202905 202905 C T HBZ 5'UTR 0.10 TCGA-FR-A3YO-06 16 20331756 20331756 C T GP2 Missense_Mutation p.R232K 0.16 tolerated(0.5) benign(0.001) TCGA-FR-A3YO-06 16 20651788 20651788 C T ACSM1 Missense_Mutation p.E371K 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 16 20974717 20974717 C T DNAH3 Missense_Mutation p.G3497R 0.10 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YO-06 16 25228650 25228650 C T AQP8 Silent p.F48F 0.18 TCGA-FR-A3YO-06 16 28857331 28857331 G A TUFM Missense_Mutation p.A50V 0.18 deleterious(0) benign(0.035) TCGA-FR-A3YO-06 16 31371384 31371384 C T ITGAX Silent p.V235V 0.18 TCGA-FR-A3YO-06 16 31383009 31383009 C T ITGAX Silent p.P688P 0.11 TCGA-FR-A3YO-06 16 33647413 33647413 C T RP11-812E19.9 Missense_Mutation p.G63R 0.13 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-FR-A3YO-06 16 4043500 4043500 C T ADCY9 Silent p.S632S 0.08 TCGA-FR-A3YO-06 16 5140227 5140227 A G FAM86A Silent p.N200N 0.31 TCGA-FR-A3YO-06 16 54967504 54967504 C T IRX5 Missense_Mutation p.P391S 0.36 tolerated(0.12) unknown(0) TCGA-FR-A3YO-06 16 57272840 57272840 C T RSPRY1 Missense_Mutation p.R562C 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 16 61760853 61760853 C T CDH8 Intron 0.13 TCGA-FR-A3YO-06 16 61891073 61891073 A T CDH8 Missense_Mutation p.V206D 0.24 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 16 66949187 66949187 G A CDH16 Silent p.A173A 0.15 TCGA-FR-A3YO-06 16 66956020 66956020 G A RRAD Missense_Mutation p.R296C 0.19 deleterious(0) possibly_damaging(0.836) TCGA-FR-A3YO-06 16 67208826 67208826 G A NOL3 Silent p.S196S 0.36 TCGA-FR-A3YO-06 16 67662408 67662408 C T CTCF Missense_Mutation p.P552S 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 16 67877153 67877153 A G THAP11 Silent p.V232V 0.29 TCGA-FR-A3YO-06 16 71101260 71101260 C T HYDIN Missense_Mutation p.E670K 0.17 probably_damaging(0.97) TCGA-FR-A3YO-06 16 71602026 71602026 C T TAT 3'UTR 0.13 TCGA-FR-A3YO-06 16 74394735 74394735 G A RP11-252A24.2 RNA 0.11 TCGA-FR-A3YO-06 16 75238040 75238040 G T CTRB2 3'UTR 0.33 TCGA-FR-A3YO-06 16 76350260 76350260 G A CNTNAP4 Intron 0.16 TCGA-FR-A3YO-06 16 76482815 76482815 G A CNTNAP4 Silent p.R273R 0.09 TCGA-FR-A3YO-06 16 76569605 76569605 G A CNTNAP4 Silent p.G900G 0.11 TCGA-FR-A3YO-06 16 80638159 80638159 G A CDYL2 3'UTR 0.57 TCGA-FR-A3YO-06 16 84164717 84164717 G A HSDL1 Silent p.A70A 0.26 TCGA-FR-A3YO-06 16 88705577 88705577 C T IL17C Silent p.A65A 0.30 TCGA-FR-A3YO-06 16 88721186 88721186 A G MVD Silent p.N309N 0.12 TCGA-FR-A3YO-06 16 89346526 89346526 G A ANKRD11 Missense_Mutation p.P2142S 0.18 probably_damaging(0.998) TCGA-FR-A3YO-06 16 89349481 89349481 C A ANKRD11 Nonsense_Mutation p.E1157* 0.11 TCGA-FR-A3YO-06 16 90001640 90001640 C T TUBB3 Missense_Mutation p.P261S 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A3YO-06 16 9923423 9923423 G A GRIN2A Missense_Mutation p.P622S 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 17 10355450 10355450 C T MYH4 Silent p.L1182L 0.12 TCGA-FR-A3YO-06 17 10367885 10367885 C T MYH4 Silent p.G184G 0.24 TCGA-FR-A3YO-06 17 10427852 10427852 C T MYH2 Silent p.E1702E 0.13 TCGA-FR-A3YO-06 17 14248870 14248870 C T HS3ST3B1 Silent p.I360I 0.12 TCGA-FR-A3YO-06 17 19617251 19617251 C T SLC47A2 Silent p.V110V 0.31 TCGA-FR-A3YO-06 17 26084282 26084282 G A NOS2 Missense_Mutation p.S1151L 0.13 tolerated_low_confidence(0.14) benign(0.035) TCGA-FR-A3YO-06 17 32647334 32647334 G A CCL8 Silent p.R41R 0.12 TCGA-FR-A3YO-06 17 33510488 33510488 C T UNC45B Silent p.L808L 0.18 TCGA-FR-A3YO-06 17 35445942 35445942 C T ACACA Missense_Mutation p.G2320D 0.32 tolerated(0.17) probably_damaging(0.999) TCGA-FR-A3YO-06 17 35827577 35827577 G A TADA2A Silent p.R281R 0.27 TCGA-FR-A3YO-06 17 36288233 36288233 C T TBC1D3F Missense_Mutation p.R107W 0.06 tolerated(0.06) benign(0.344) TCGA-FR-A3YO-06 17 38066101 38066101 G A GSDMB Silent p.L162L 0.11 TCGA-FR-A3YO-06 17 38172738 38172738 G A CSF3 Missense_Mutation p.A105T 0.34 tolerated(1) benign(0.001) TCGA-FR-A3YO-06 17 38557173 38557173 G A TOP2A Missense_Mutation p.P865S 0.29 deleterious(0.01) possibly_damaging(0.734) TCGA-FR-A3YO-06 17 39279728 39279728 G A KRTAP4-12 3'UTR 0.29 TCGA-FR-A3YO-06 17 39552705 39552705 C T KRT31 Silent p.E185E 0.28 TCGA-FR-A3YO-06 17 39577662 39577662 C T KRT37 Missense_Mutation p.E400K 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 17 39644531 39644531 C A KRT36 Missense_Mutation p.K221N 0.18 deleterious(0.01) benign(0.077) TCGA-FR-A3YO-06 17 39661532 39661532 C T KRT13 Missense_Mutation p.D91N 0.12 tolerated(0.19) unknown(0) TCGA-FR-A3YO-06 17 39727608 39727608 C T KRT9 Missense_Mutation p.D213N 0.10 tolerated(1) benign(0.026) TCGA-FR-A3YO-06 17 39921024 39921024 G A JUP Missense_Mutation p.R367C 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YO-06 17 40864494 40864494 G A EZH1 Missense_Mutation p.S405F 0.16 tolerated(0.1) probably_damaging(0.991) TCGA-FR-A3YO-06 17 40948140 40948140 G A WNK4 Splice_Site p.X1144_splice 0.12 TCGA-FR-A3YO-06 17 41570923 41570923 C T DHX8 Missense_Mutation p.S325F 0.34 deleterious(0) probably_damaging(0.961) TCGA-FR-A3YO-06 17 43004409 43004409 G A KIF18B Missense_Mutation p.P772S 0.14 tolerated(0.08) benign(0.046) TCGA-FR-A3YO-06 17 46919221 46919221 G C CALCOCO2 Missense_Mutation p.R51P 0.10 deleterious(0) probably_damaging(0.975) TCGA-FR-A3YO-06 17 4711409 4711409 G A PLD2 Silent p.K80K 0.13 TCGA-FR-A3YO-06 17 48212643 48212648 GGAGGA AGAGG PPP1R9B 3'UTR 0.21 TCGA-FR-A3YO-06 17 48627463 48627463 A C SPATA20 Missense_Mutation p.D327A 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 17 48744926 48744926 G A ABCC3 Missense_Mutation p.M481I 0.22 deleterious(0.02) benign(0.259) TCGA-FR-A3YO-06 17 4937852 4937852 G A SLC52A1 Missense_Mutation p.A17V 0.35 deleterious(0.03) benign(0.242) TCGA-FR-A3YO-06 17 55182893 55182893 G A AKAP1 Nonsense_Mutation p.W23* 0.14 TCGA-FR-A3YO-06 17 56393405 56393405 C T BZRAP1 Missense_Mutation p.D693N 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 17 56663245 56663245 C T TEX14 Missense_Mutation p.G1002E 0.28 tolerated(0.08) benign(0.078) TCGA-FR-A3YO-06 17 60526261 60526261 C T METTL2A 3'UTR 0.14 TCGA-FR-A3YO-06 17 60765904 60765904 G A MRC2 Nonsense_Mutation p.W1035* 0.15 TCGA-FR-A3YO-06 17 61766969 61766969 C G MAP3K3 Missense_Mutation p.R344G 0.17 deleterious(0.04) benign(0.003) TCGA-FR-A3YO-06 17 72954801 72954801 G A HID1 Missense_Mutation p.L403F 0.08 deleterious(0) probably_damaging(0.946) TCGA-FR-A3YO-06 17 74018539 74018539 C T EVPL Silent p.K187K 0.09 TCGA-FR-A3YO-06 17 76137122 76137122 C T TMC8 Missense_Mutation p.P704S 0.20 tolerated_low_confidence(0.92) benign(0.001) TCGA-FR-A3YO-06 17 76455871 76455871 G A DNAH17 Silent p.A3202A 0.29 TCGA-FR-A3YO-06 17 7999886 7999886 G A ALOXE3 3'UTR 0.15 TCGA-FR-A3YO-06 17 8049363 8049363 T A PER1 Nonsense_Mutation p.K711* 0.12 TCGA-FR-A3YO-06 18 21530063 21530063 C T LAMA3 Silent p.I3194I 0.11 TCGA-FR-A3YO-06 18 28736023 28736023 G A DSC1 Missense_Mutation p.P152S 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 18 28968370 28968370 G A DSG4 Missense_Mutation p.R86Q 0.12 tolerated(0.12) probably_damaging(0.975) TCGA-FR-A3YO-06 18 28971080 28971080 C T DSG4 Missense_Mutation p.R242W 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 18 30806793 30806793 G A CCDC178 Silent p.L540L 0.22 TCGA-FR-A3YO-06 18 30873201 30873201 C T CCDC178 Silent p.E366E 0.17 TCGA-FR-A3YO-06 18 319939 319939 C T COLEC12 3'UTR 0.13 TCGA-FR-A3YO-06 18 43534472 43534472 C T EPG5 Missense_Mutation p.R299Q 0.14 deleterious(0) probably_damaging(0.947) TCGA-FR-A3YO-06 18 43585437 43585437 C T PSTPIP2 Missense_Mutation p.D139N 0.25 deleterious(0.01) benign(0.049) TCGA-FR-A3YO-06 18 45567248 45567248 G A ZBTB7C Silent p.I77I 0.20 TCGA-FR-A3YO-06 18 52551645 52551645 C T RAB27B Silent p.F107F 0.12 TCGA-FR-A3YO-06 18 56191271 56191271 G A ALPK2 Missense_Mutation p.S1842F 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 18 6974991 6974991 G A LAMA1 Silent p.F2178F 0.10 TCGA-FR-A3YO-06 18 70417713 70417713 C T NETO1 Silent p.R375R 0.22 TCGA-FR-A3YO-06 18 71740925 71740925 C T FBXO15 Missense_Mutation p.G435E 0.13 tolerated(0.48) benign(0.021) TCGA-FR-A3YO-06 18 74728995 74728995 G A MBP Silent p.D123D 0.15 TCGA-FR-A3YO-06 18 905426 905426 C T ADCYAP1 Silent p.V13V 0.12 TCGA-FR-A3YO-06 19 11216267 11216267 G A LDLR Missense_Mutation p.E229K 0.07 tolerated(0.59) benign(0.042) TCGA-FR-A3YO-06 19 11943279 11943279 G A ZNF440 Missense_Mutation p.G430R 0.30 deleterious(0.02) probably_damaging(1) TCGA-FR-A3YO-06 19 12491757 12491757 G A CTD-3105H18.14 3'UTR 0.16 TCGA-FR-A3YO-06 19 12542483 12542483 G A ZNF443 Missense_Mutation p.P168L 0.14 tolerated(0.19) benign(0.027) TCGA-FR-A3YO-06 19 12575771 12575771 G A ZNF709 Missense_Mutation p.S322F 0.16 tolerated(0.16) probably_damaging(0.93) TCGA-FR-A3YO-06 19 13941353 13941353 G A ZSWIM4 Missense_Mutation p.R820Q 0.13 tolerated(0.14) unknown(0) TCGA-FR-A3YO-06 19 14765861 14765861 C T EMR3 Silent p.S170S 0.20 TCGA-FR-A3YO-06 19 15734858 15734858 G A CYP4F8 RNA 0.24 TCGA-FR-A3YO-06 19 17108002 17108002 G A CPAMD8 Silent p.P385P 0.14 TCGA-FR-A3YO-06 19 17394286 17394286 C T ANKLE1 Missense_Mutation p.P238L 0.20 tolerated(0.67) benign(0.031) TCGA-FR-A3YO-06 19 17766812 17766812 G A UNC13A Missense_Mutation p.A388V 0.40 tolerated_low_confidence(0.26) benign(0) TCGA-FR-A3YO-06 19 20728174 20728174 G A ZNF737 Missense_Mutation p.H279Y 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A3YO-06 19 21606747 21606747 G A ZNF493 Missense_Mutation p.G429E 0.13 deleterious(0.04) probably_damaging(0.996) TCGA-FR-A3YO-06 19 22170023 22170023 G A ZNF208 Missense_Mutation p.S74F 0.12 tolerated(0.7) benign(0.012) TCGA-FR-A3YO-06 19 2226981 2226981 C T DOT1L Silent p.S1487S 0.15 TCGA-FR-A3YO-06 19 22939100 22939100 C T ZNF99 3'Flank 0.11 TCGA-FR-A3YO-06 19 32845063 32845063 C T ZNF507 Missense_Mutation p.R443C 0.12 tolerated(0.16) benign(0.005) TCGA-FR-A3YO-06 19 34302394 34302394 C T KCTD15 Silent p.N210N 0.06 TCGA-FR-A3YO-06 19 35823599 35823599 C T CD22 Missense_Mutation p.P62S 0.15 tolerated(0.44) benign(0.313) TCGA-FR-A3YO-06 19 3595812 3595812 G A TBXA2R Silent p.I302I 0.19 TCGA-FR-A3YO-06 19 36216413 36216413 C T KMT2B Missense_Mutation p.H1226Y 0.27 benign(0.346) TCGA-FR-A3YO-06 19 36293156 36293156 G A PRODH2 Silent p.L455L 0.14 TCGA-FR-A3YO-06 19 36363479 36363479 G A APLP1 Missense_Mutation p.M315I 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-FR-A3YO-06 19 36365769 36365769 C T APLP1 Nonsense_Mutation p.Q448* 0.38 TCGA-FR-A3YO-06 19 3664862 3664862 G A PIP5K1C Silent p.G59G 0.13 TCGA-FR-A3YO-06 19 37309706 37309706 C T ZNF790 Missense_Mutation p.A514T 0.26 tolerated(0.1) probably_damaging(0.971) TCGA-FR-A3YO-06 19 38572699 38572699 C T SIPA1L3 Missense_Mutation p.P165L 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A3YO-06 19 38591801 38591801 C T SIPA1L3 Missense_Mutation p.S655F 0.20 deleterious(0) benign(0.389) TCGA-FR-A3YO-06 19 3907734 3907734 G A ATCAY Missense_Mutation p.D121N 0.23 deleterious(0.02) benign(0.212) TCGA-FR-A3YO-06 19 39867422 39867422 C T SAMD4B Silent p.S365S 0.16 TCGA-FR-A3YO-06 19 41257281 41257281 C T SNRPA 5'UTR 0.25 TCGA-FR-A3YO-06 19 41600879 41600879 C T CYP2A13 Missense_Mutation p.P393S 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 19 42489189 42489189 G A ATP1A3 Silent p.L305L 0.18 TCGA-FR-A3YO-06 19 42490331 42490331 G A ATP1A3 Silent p.F149F 0.26 TCGA-FR-A3YO-06 19 42814487 42814487 C T PRR19 Silent p.V222V 0.17 TCGA-FR-A3YO-06 19 43689011 43689011 C T PSG5 Missense_Mutation p.G118E 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 19 43762408 43762408 G A PSG9 Missense_Mutation p.H397Y 0.12 tolerated(0.06) benign(0.035) TCGA-FR-A3YO-06 19 44586195 44586195 C T ZNF284 Missense_Mutation p.H58Y 0.19 tolerated(0.29) benign(0.012) TCGA-FR-A3YO-06 19 44589982 44589982 C T ZNF284 Silent p.S117S 0.14 TCGA-FR-A3YO-06 19 44611036 44611036 C T ZNF224 Silent p.F241F 0.16 TCGA-FR-A3YO-06 19 44891347 44891347 C T ZNF285 Missense_Mutation p.G354R 0.16 tolerated(0.84) benign(0.137) TCGA-FR-A3YO-06 19 45017003 45017003 C T CEACAM20 RNA 0.24 TCGA-FR-A3YO-06 19 46269029 46269029 G A SIX5 Silent p.P650P 0.14 TCGA-FR-A3YO-06 19 46734127 46734127 C T IGFL1 3'UTR 0.16 TCGA-FR-A3YO-06 19 48733794 48733794 G A CARD8 Silent p.S312S 0.15 TCGA-FR-A3YO-06 19 49377896 49377896 A G PPP1R15A Missense_Mutation p.H469R 0.19 tolerated(0.55) benign(0.001) TCGA-FR-A3YO-06 19 49994111 49994111 C T RPL13A Missense_Mutation p.P111L 0.13 deleterious(0.02) benign(0.174) TCGA-FR-A3YO-06 19 50838111 50838111 C T NAPSB RNA 0.23 TCGA-FR-A3YO-06 19 51362962 51362962 C T KLK3 Intron 0.17 TCGA-FR-A3YO-06 19 51645671 51645671 G T SIGLEC7 Missense_Mutation p.R15S 0.12 tolerated(0.19) benign(0.072) TCGA-FR-A3YO-06 19 52130502 52130502 C T SIGLEC5 Splice_Site p.X428_splice 0.16 TCGA-FR-A3YO-06 19 54314064 54314064 G A NLRP12 Silent p.I283I 0.17 TCGA-FR-A3YO-06 19 54444813 54444813 C T CACNG7 Missense_Mutation p.H172Y 0.16 deleterious(0.01) benign(0.154) TCGA-FR-A3YO-06 19 54783331 54783331 G A LILRB2 Missense_Mutation p.S176L 0.22 tolerated(0.07) benign(0.016) TCGA-FR-A3YO-06 19 54824385 54824385 C T LILRA5 5'UTR 0.15 TCGA-FR-A3YO-06 19 55106695 55106695 A G LILRA1 Silent p.E163E 0.26 TCGA-FR-A3YO-06 19 55828197 55828197 G A TMEM150B Silent p.L154L 0.33 TCGA-FR-A3YO-06 19 5594150 5594150 G A SAFB2 Silent p.A653A 0.10 TCGA-FR-A3YO-06 19 56226562 56226562 G A NLRP9 Missense_Mutation p.S787F 0.17 deleterious(0) possibly_damaging(0.646) TCGA-FR-A3YO-06 19 56369571 56369571 C T NLRP4 Missense_Mutation p.P271L 0.33 deleterious(0.02) probably_damaging(0.976) TCGA-FR-A3YO-06 19 56515201 56515201 C T NLRP5 Missense_Mutation p.S61F 0.30 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 19 57640685 57640685 G A USP29 Silent p.E214E 0.14 TCGA-FR-A3YO-06 19 57649928 57649928 G A ZIM3 Silent p.T18T 0.25 TCGA-FR-A3YO-06 19 58118648 58118648 C T ZNF530 Silent p.S585S 0.11 TCGA-FR-A3YO-06 19 58118649 58118649 C T ZNF530 Nonsense_Mutation p.Q586* 0.11 TCGA-FR-A3YO-06 19 58265022 58265022 C T ZNF776 Missense_Mutation p.S175F 0.30 deleterious(0.01) benign(0.265) TCGA-FR-A3YO-06 19 5843680 5843680 G A FUT3 3'UTR 0.06 TCGA-FR-A3YO-06 19 58472789 58472789 C T C19orf18 Missense_Mutation p.E168K 0.21 deleterious(0) possibly_damaging(0.81) TCGA-FR-A3YO-06 19 757303 757303 G A MISP Silent p.K119K 0.15 TCGA-FR-A3YO-06 19 7809012 7809012 C T CD209 Missense_Mutation p.G332S 0.13 deleterious(0) possibly_damaging(0.523) TCGA-FR-A3YO-06 19 7832450 7832450 G A CLEC4M Missense_Mutation p.G329R 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 19 8160934 8160934 C T FBN3 Missense_Mutation p.G1857E 0.10 deleterious(0.01) possibly_damaging(0.718) TCGA-FR-A3YO-06 19 8206851 8206851 G A FBN3 Missense_Mutation p.P238S 0.25 deleterious(0) probably_damaging(0.955) TCGA-FR-A3YO-06 19 8953426 8953426 C T MBD3L1 Silent p.T24T 0.10 TCGA-FR-A3YO-06 19 9062037 9062037 G A MUC16 Missense_Mutation p.S8470L 0.14 unknown(0) TCGA-FR-A3YO-06 19 9062445 9062445 G A MUC16 Missense_Mutation p.T8334I 0.11 unknown(0) TCGA-FR-A3YO-06 19 9068203 9068203 C T MUC16 Missense_Mutation p.E6415K 0.19 unknown(0) TCGA-FR-A3YO-06 19 9088237 9088237 G A MUC16 Missense_Mutation p.P1193L 0.18 unknown(0) TCGA-FR-A3YO-06 19 9577428 9577428 C T ZNF560 Missense_Mutation p.R732Q 0.21 deleterious(0.04) benign(0.001) TCGA-FR-A3YO-06 19 9579864 9579864 C T ZNF560 Splice_Site p.X177_splice 0.19 TCGA-FR-A3YO-06 1 109486497 109486497 G A CLCC1 Silent p.F174F 0.45 TCGA-FR-A3YO-06 1 115454118 115454118 G A SYCP1 Missense_Mutation p.E482K 0.42 tolerated(0.59) benign(0.032) TCGA-FR-A3YO-06 1 1192649 1192649 G A UBE2J2 Missense_Mutation p.P88S 0.33 tolerated(0.06) possibly_damaging(0.831) TCGA-FR-A3YO-06 1 1266825 1266825 G A TAS1R3 Missense_Mutation p.D34N 0.23 tolerated(0.11) benign(0.113) TCGA-FR-A3YO-06 1 12835154 12835154 C T PRAMEF12 Silent p.C48C 0.39 TCGA-FR-A3YO-06 1 13036556 13036556 C T PRAMEF22 Nonsense_Mutation p.Q210* 0.05 TCGA-FR-A3YO-06 1 1342378 1342378 G A MRPL20 Missense_Mutation p.R37C 0.23 tolerated(0.08) benign(0.101) TCGA-FR-A3YO-06 1 144852412 144852412 G A PDE4DIP Missense_Mutation p.S2344F 0.26 deleterious(0.04) benign(0.003) TCGA-FR-A3YO-06 1 144879265 144879265 G A PDE4DIP Silent p.P1395P 0.33 TCGA-FR-A3YO-06 1 147380613 147380613 C T GJA8 Silent p.I177I 0.45 TCGA-FR-A3YO-06 1 152538501 152538501 G A LCE3E Nonsense_Mutation p.R62* 0.52 TCGA-FR-A3YO-06 1 152538502 152538502 G A LCE3E Silent p.H61H 0.52 TCGA-FR-A3YO-06 1 152733449 152733449 C T KPRP Missense_Mutation p.P462L 0.40 deleterious(0.04) probably_damaging(0.958) TCGA-FR-A3YO-06 1 153084874 153084874 G A SPRR2F 3'UTR 0.46 TCGA-FR-A3YO-06 1 153362720 153362720 C T S100A8 Splice_Site p.X48_splice 0.55 TCGA-FR-A3YO-06 1 153924600 153924600 G A CRTC2 Silent p.A297A 0.59 TCGA-FR-A3YO-06 1 154474134 154474134 G A SHE Silent p.S123S 0.42 TCGA-FR-A3YO-06 1 155264460 155264460 C T PKLR Missense_Mutation p.D260N 0.47 deleterious(0.02) benign(0.07) TCGA-FR-A3YO-06 1 158225110 158225110 C T CD1A Missense_Mutation p.R99C 0.52 deleterious(0.01) benign(0.319) TCGA-FR-A3YO-06 1 158637738 158637738 C T SPTA1 Missense_Mutation p.G650S 0.49 tolerated(0.77) benign(0.001) TCGA-FR-A3YO-06 1 158687133 158687133 T A OR6K3 Missense_Mutation p.Y258F 0.52 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.16 tolerated(0.38) benign(0.101) TCGA-FR-A3YO-06 1 159284194 159284194 G A OR10J3 Missense_Mutation p.L86F 0.41 deleterious(0.01) possibly_damaging(0.532) TCGA-FR-A3YO-06 1 160124975 160124975 C T ATP1A4 Silent p.A116A 0.55 TCGA-FR-A3YO-06 1 160784355 160784355 G A LY9 Silent p.E292E 0.41 TCGA-FR-A3YO-06 1 160797600 160797600 C T LY9 Silent p.F654F 0.40 TCGA-FR-A3YO-06 1 160970470 160970470 C T F11R Silent p.E113E 0.42 TCGA-FR-A3YO-06 1 161132788 161132788 C T USP21 Missense_Mutation p.P325S 0.48 deleterious(0.01) possibly_damaging(0.87) TCGA-FR-A3YO-06 1 16359691 16359691 C T CLCNKA Silent p.N652N 0.40 TCGA-FR-A3YO-06 1 168014329 168014329 T C DCAF6 Missense_Mutation p.F708L 0.63 tolerated_low_confidence(0.5) benign(0.001) TCGA-FR-A3YO-06 1 169515827 169515827 C T F5 Missense_Mutation p.A539T 0.57 tolerated(0.37) benign(0.046) TCGA-FR-A3YO-06 1 169586524 169586524 C T SELP Missense_Mutation p.E75K 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 1 175372477 175372477 C T TNR Missense_Mutation p.E259K 0.38 tolerated(0.12) benign(0.003) TCGA-FR-A3YO-06 1 176661284 176661284 C T PAPPA2 Silent p.F818F 0.53 TCGA-FR-A3YO-06 1 182025397 182025397 C T ZNF648 3'UTR 0.11 TCGA-FR-A3YO-06 1 182617353 182617353 C T RGS8 Silent p.K111K 0.58 TCGA-FR-A3YO-06 1 19411035 19411035 G A UBR4 Missense_Mutation p.P4991S 0.10 probably_damaging(0.992) TCGA-FR-A3YO-06 1 196716465 196716465 C T CFH 3'UTR 0.11 TCGA-FR-A3YO-06 1 196871568 196871568 C G CFHR4 Missense_Mutation p.P26A 0.40 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 1 202888910 202888910 G A KLHL12 Missense_Mutation p.P108S 0.25 deleterious(0) probably_damaging(0.994) TCGA-FR-A3YO-06 1 205555197 205555197 G A MFSD4 Silent p.V337V 0.17 TCGA-FR-A3YO-06 1 207196514 207196514 G A C1orf116 Missense_Mutation p.P199S 0.47 deleterious(0.04) probably_damaging(1) TCGA-FR-A3YO-06 1 207850750 207850750 G A CR1L Silent p.P38P 0.50 TCGA-FR-A3YO-06 1 214454717 214454717 C T SMYD2 Silent p.A40A 0.34 TCGA-FR-A3YO-06 1 216246510 216246510 C T USH2A Missense_Mutation p.G1902E 0.47 benign(0.272) TCGA-FR-A3YO-06 1 216260106 216260106 G A USH2A Silent p.L1648L 0.40 TCGA-FR-A3YO-06 1 217784272 217784272 A C GPATCH2 Nonsense_Mutation p.L326* 0.52 TCGA-FR-A3YO-06 1 222742707 222742707 G A TAF1A Intron 0.54 TCGA-FR-A3YO-06 1 228401903 228401903 G C OBSCN Missense_Mutation p.K429N 0.16 probably_damaging(0.999) TCGA-FR-A3YO-06 1 228505789 228505789 C T OBSCN Silent p.I5639I 0.51 TCGA-FR-A3YO-06 1 228558793 228558793 G A OBSCN Missense_Mutation p.D7729N 0.21 probably_damaging(0.992) TCGA-FR-A3YO-06 1 229636606 229636606 G A NUP133 Missense_Mutation p.S137F 0.57 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A3YO-06 1 231047264 231047264 G A TTC13 Missense_Mutation p.S754F 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-FR-A3YO-06 1 233807084 233807084 G A KCNK1 Silent p.L273L 0.22 TCGA-FR-A3YO-06 1 238053265 238053265 G A ZP4 Missense_Mutation p.S101F 0.31 tolerated(0.39) benign(0.008) TCGA-FR-A3YO-06 1 24448053 24448053 C T IL22RA1 Missense_Mutation p.E323K 0.05 deleterious(0.01) benign(0.352) TCGA-FR-A3YO-06 1 248112520 248112520 C T OR2L8 Missense_Mutation p.R121C 0.25 deleterious(0.01) benign(0.211) TCGA-FR-A3YO-06 1 248201553 248201553 G A OR2L2 5'UTR 0.45 TCGA-FR-A3YO-06 1 248813672 248813672 G A OR2T27 Missense_Mutation p.R172W 0.24 deleterious(0.03) benign(0.103) TCGA-FR-A3YO-06 1 2541145 2541145 C T MMEL1 Missense_Mutation p.D140N 0.42 tolerated(0.16) probably_damaging(0.92) TCGA-FR-A3YO-06 1 26751942 26751942 G A LIN28A Missense_Mutation p.G126E 0.18 deleterious(0) possibly_damaging(0.657) TCGA-FR-A3YO-06 1 36808935 36808935 G A STK40 Intron 0.65 TCGA-FR-A3YO-06 1 39838397 39838397 A G MACF1 Intron 0.79 TCGA-FR-A3YO-06 1 40030179 40030179 C T PABPC4 Missense_Mutation p.G457R 0.64 tolerated(0.12) benign(0.046) TCGA-FR-A3YO-06 1 40092709 40092709 G A HEYL Missense_Mutation p.L153F 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 1 42049212 42049212 A G HIVEP3 Silent p.F419F 0.05 TCGA-FR-A3YO-06 1 42050501 42050501 G A HIVEP3 5'UTR 0.45 TCGA-FR-A3YO-06 1 43108268 43108268 C T CCDC30 Missense_Mutation p.S588F 0.54 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 1 43119047 43119047 G A CCDC30 Missense_Mutation p.E692K 0.57 tolerated(0.06) benign(0.133) TCGA-FR-A3YO-06 1 47746064 47746064 G A STIL Missense_Mutation p.P689L 0.41 tolerated(0.07) benign(0.033) TCGA-FR-A3YO-06 1 47746065 47746065 G A STIL Missense_Mutation p.P689S 0.42 tolerated(0.38) benign(0.023) TCGA-FR-A3YO-06 1 54605627 54605627 C T CDCP2 Missense_Mutation p.E306K 0.39 tolerated(0.14) possibly_damaging(0.593) TCGA-FR-A3YO-06 1 57480915 57480915 G A DAB1 Missense_Mutation p.P362L 0.45 deleterious(0.01) benign(0.207) TCGA-FR-A3YO-06 1 60073552 60073552 T A FGGY Missense_Mutation p.N327K 0.41 deleterious(0) possibly_damaging(0.783) TCGA-FR-A3YO-06 1 75114936 75114936 C T C1orf173 Silent p.R29R 0.38 TCGA-FR-A3YO-06 1 7805042 7805042 C T CAMTA1 Silent p.L1444L 0.32 TCGA-FR-A3YO-06 1 79357251 79357251 C T ELTD1 Silent p.Q656Q 0.53 TCGA-FR-A3YO-06 1 87040235 87040235 G A CLCA4 Missense_Mutation p.G494R 0.44 deleterious(0.03) possibly_damaging(0.798) TCGA-FR-A3YO-06 1 92798971 92798971 A T RPAP2 Silent p.I493I 0.16 TCGA-FR-A3YO-06 1 94471041 94471041 G A ABCA4 Missense_Mutation p.L2035F 0.46 tolerated(0.71) probably_damaging(0.99) TCGA-FR-A3YO-06 20 13830117 13830117 C T SEL1L2 3'UTR 0.12 TCGA-FR-A3YO-06 20 2375200 2375200 C T TGM6 Missense_Mutation p.S37L 0.17 tolerated(0.36) benign(0.002) TCGA-FR-A3YO-06 20 25261734 25261734 C T PYGB Silent p.I463I 0.12 TCGA-FR-A3YO-06 20 2616640 2616640 A T TMC2 Missense_Mutation p.K792I 0.13 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 20 30436106 30436106 C T FOXS1 5'Flank 0.30 TCGA-FR-A3YO-06 20 30436107 30436107 C T FOXS1 5'Flank 0.29 TCGA-FR-A3YO-06 20 31600626 31600626 T G BPIFB2 Missense_Mutation p.V74G 0.25 deleterious(0) possibly_damaging(0.876) TCGA-FR-A3YO-06 20 34242240 34242240 C G RBM12 Missense_Mutation p.L335F 0.22 deleterious(0.03) probably_damaging(0.987) TCGA-FR-A3YO-06 20 35240645 35240645 C T C20orf24 3'UTR 0.27 TCGA-FR-A3YO-06 20 36775284 36775284 C T TGM2 Missense_Mutation p.D232N 0.33 deleterious(0.01) possibly_damaging(0.858) TCGA-FR-A3YO-06 20 3684069 3684069 G A SIGLEC1 Missense_Mutation p.P335S 0.15 tolerated(0.25) benign(0.014) TCGA-FR-A3YO-06 20 37547161 37547161 C T PPP1R16B Missense_Mutation p.P519L 0.11 tolerated(0.09) benign(0.003) TCGA-FR-A3YO-06 20 39831567 39831567 G A ZHX3 Missense_Mutation p.R664W 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 20 40116370 40116370 G A CHD6 Missense_Mutation p.P646S 0.11 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 20 41420006 41420006 G A PTPRT Silent p.F105F 0.28 TCGA-FR-A3YO-06 20 43058175 43058175 C T HNF4A Missense_Mutation p.T432I 0.22 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-FR-A3YO-06 20 43836841 43836841 A C SEMG1 Silent p.G301G 0.29 TCGA-FR-A3YO-06 20 44333576 44333576 C T WFDC10B Missense_Mutation p.D19N 0.23 tolerated_low_confidence(0.32) unknown(0) TCGA-FR-A3YO-06 20 44573541 44573541 C T PCIF1 Missense_Mutation p.P347L 0.07 deleterious(0) probably_damaging(0.984) TCGA-FR-A3YO-06 20 54940142 54940142 G A FAM210B Splice_Site p.X63_splice 0.30 TCGA-FR-A3YO-06 20 5904019 5904019 G A CHGB Missense_Mutation p.G410D 0.28 tolerated(0.23) benign(0.075) TCGA-FR-A3YO-06 20 60887986 60887986 G A LAMA5 Silent p.V3012V 0.33 TCGA-FR-A3YO-06 20 60986000 60986000 G A RBBP8NL Silent p.P643P 0.31 TCGA-FR-A3YO-06 20 61870954 61870954 C T BIRC7 Silent p.S298S 0.24 TCGA-FR-A3YO-06 20 9402065 9402065 G A PLCB4 Missense_Mutation p.G747E 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 21 11039038 11039038 C T BAGE2 RNA 0.05 TCGA-FR-A3YO-06 21 15746238 15746238 G A HSPA13 Silent p.T372T 0.25 TCGA-FR-A3YO-06 21 15884894 15884894 C T SAMSN1 Missense_Mutation p.D162N 0.10 tolerated(0.54) benign(0.036) TCGA-FR-A3YO-06 21 19653399 19653399 C T TMPRSS15 Missense_Mutation p.D876N 0.13 deleterious(0) probably_damaging(0.979) TCGA-FR-A3YO-06 21 31691928 31691928 G A KRTAP26-1 Silent p.A142A 0.25 TCGA-FR-A3YO-06 21 39671516 39671516 G A KCNJ15 Silent p.V111V 0.22 TCGA-FR-A3YO-06 21 41414358 41414358 G A DSCAM Missense_Mutation p.P1876S 0.09 deleterious(0) probably_damaging(0.988) TCGA-FR-A3YO-06 21 41559889 41559889 G A DSCAM Missense_Mutation p.S860F 0.16 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 21 42080596 42080596 C T DSCAM Missense_Mutation p.A49T 0.14 tolerated(0.58) benign(0.151) TCGA-FR-A3YO-06 21 43786558 43786558 G A TFF1 Missense_Mutation p.S16F 0.10 tolerated(0.28) benign(0.001) TCGA-FR-A3YO-06 21 45540978 45540978 C T PWP2 Missense_Mutation p.S544F 0.31 deleterious(0) probably_damaging(0.928) TCGA-FR-A3YO-06 21 46078148 46078148 C T KRTAP12-3 Silent p.L84L 0.08 TCGA-FR-A3YO-06 21 46306657 46306657 C T ITGB2 Nonsense_Mutation p.W747* 0.14 TCGA-FR-A3YO-06 21 47532368 47532368 G A COL6A2 Silent p.K197K 0.12 TCGA-FR-A3YO-06 22 16266988 16266988 C T POTEH Silent p.R487R 0.07 TCGA-FR-A3YO-06 22 17488907 17488907 C T GAB4 Missense_Mutation p.G33E 0.25 tolerated_low_confidence(0.05) benign(0.004) TCGA-FR-A3YO-06 22 17688074 17688074 G A CECR1 Silent p.I143I 0.12 TCGA-FR-A3YO-06 22 23915730 23915730 G A IGLL1 Missense_Mutation p.S122F 0.18 tolerated_low_confidence(0.15) possibly_damaging(0.777) TCGA-FR-A3YO-06 22 25024079 25024079 G A GGT1 Silent p.T456T 0.13 TCGA-FR-A3YO-06 22 26219548 26219548 G A MYO18B Silent p.L866L 0.12 TCGA-FR-A3YO-06 22 32463992 32463992 C T SLC5A1 Silent p.V117V 0.25 TCGA-FR-A3YO-06 22 35481590 35481590 C T ISX Silent p.V214V 0.28 TCGA-FR-A3YO-06 22 36003326 36003326 G A MB 3'UTR 0.14 TCGA-FR-A3YO-06 22 36545174 36545174 C T APOL3 Intron 0.28 TCGA-FR-A3YO-06 22 39067040 39067040 A G CBY1 Intron 0.22 TCGA-FR-A3YO-06 22 39067041 39067041 A T CBY1 Intron 0.22 TCGA-FR-A3YO-06 22 39918064 39918064 C A ATF4 Silent p.S171S 0.25 TCGA-FR-A3YO-06 22 40139789 40139789 A G ENTHD1 Silent p.L573L 0.19 TCGA-FR-A3YO-06 22 40417689 40417689 C G FAM83F Missense_Mutation p.P392R 0.26 deleterious(0) possibly_damaging(0.58) TCGA-FR-A3YO-06 22 40417690 40417690 C T FAM83F Silent p.P392P 0.25 TCGA-FR-A3YO-06 22 41742068 41742068 G A ZC3H7B Silent p.E507E 0.21 TCGA-FR-A3YO-06 22 44385092 44385092 A T SAMM50 Missense_Mutation p.T393S 0.16 deleterious(0.01) benign(0.264) TCGA-FR-A3YO-06 22 46807518 46807518 T C CELSR1 Missense_Mutation p.T1584A 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-FR-A3YO-06 22 50553632 50553632 C T MOV10L1 Missense_Mutation p.P406S 0.13 tolerated(0.17) benign(0.142) TCGA-FR-A3YO-06 22 50717097 50717097 G A PLXNB2 Silent p.I1525I 0.19 TCGA-FR-A3YO-06 22 50882378 50882378 C T PPP6R2 Missense_Mutation p.P862L 0.38 tolerated_low_confidence(0.28) benign(0.009) TCGA-FR-A3YO-06 22 50926428 50926428 C T MIOX Silent p.F97F 0.17 TCGA-FR-A3YO-06 22 51018251 51018251 A G CHKB Silent p.F312F 0.23 TCGA-FR-A3YO-06 22 51020221 51020221 A G CHKB Missense_Mutation p.L135P 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 2 102793014 102793014 C T IL1R1 Missense_Mutation p.S502L 0.29 deleterious(0) probably_damaging(0.919) TCGA-FR-A3YO-06 2 102954760 102954760 C T IL1RL1 Silent p.L12L 0.24 TCGA-FR-A3YO-06 2 103013336 103013336 C T IL18R1 Missense_Mutation p.S539F 0.22 deleterious(0) possibly_damaging(0.784) TCGA-FR-A3YO-06 2 103119961 103119961 G A SLC9A4 Missense_Mutation p.E259K 0.12 tolerated(0.24) possibly_damaging(0.779) TCGA-FR-A3YO-06 2 107041296 107041296 G A RGPD3 Nonsense_Mutation p.Q1043* 0.15 TCGA-FR-A3YO-06 2 107052662 107052662 C T RGPD3 Missense_Mutation p.E559K 0.14 tolerated(0.08) benign(0.027) TCGA-FR-A3YO-06 2 107459728 107459728 C T ST6GAL2 Missense_Mutation p.V236M 0.16 probably_damaging(0.984) TCGA-FR-A3YO-06 2 112761501 112761501 G A MERTK Missense_Mutation p.E603K 0.11 deleterious(0) probably_damaging(0.963) TCGA-FR-A3YO-06 2 113764226 113764226 G A IL36A Missense_Mutation p.R59K 0.24 tolerated(1) benign(0.023) TCGA-FR-A3YO-06 2 113832854 113832854 C T IL1F10 Silent p.G124G 0.12 TCGA-FR-A3YO-06 2 114483038 114483038 G A SLC35F5 Silent p.F389F 0.33 TCGA-FR-A3YO-06 2 118865960 118865960 A T INSIG2 3'UTR 0.12 TCGA-FR-A3YO-06 2 120385305 120385305 G A PCDP1 Silent p.K531K 0.28 TCGA-FR-A3YO-06 2 121746665 121746665 G A GLI2 Missense_Mutation p.D1059N 0.29 tolerated(0.06) possibly_damaging(0.454) TCGA-FR-A3YO-06 2 122513234 122513234 G A TSN 5'UTR 0.65 TCGA-FR-A3YO-06 2 127808387 127808387 G A BIN1 Silent p.F521F 0.11 TCGA-FR-A3YO-06 2 128015297 128015297 G A ERCC3 Missense_Mutation p.R742W 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 2 128384852 128384852 C T MYO7B Missense_Mutation p.S1450F 0.24 deleterious(0) benign(0.02) TCGA-FR-A3YO-06 2 128775435 128775435 G A SAP130 Missense_Mutation p.S82F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.916) TCGA-FR-A3YO-06 2 130832996 130832996 C T POTEF Silent p.V683V 0.23 TCGA-FR-A3YO-06 2 132021632 132021632 G A POTEE Silent p.G868G 0.20 TCGA-FR-A3YO-06 2 132021839 132021839 G A POTEE Silent p.E937E 0.15 TCGA-FR-A3YO-06 2 138169325 138169325 C T THSD7B Nonsense_Mutation p.R948* 0.20 TCGA-FR-A3YO-06 2 141055537 141055537 C T LRP1B Silent p.G4269G 0.14 TCGA-FR-A3YO-06 2 141274532 141274532 C T LRP1B Missense_Mutation p.G2692E 0.19 probably_damaging(0.982) TCGA-FR-A3YO-06 2 141528506 141528506 C T LRP1B Missense_Mutation p.R1857K 0.13 benign(0.067) TCGA-FR-A3YO-06 2 141777534 141777534 C T LRP1B Missense_Mutation p.E643K 0.25 possibly_damaging(0.621) TCGA-FR-A3YO-06 2 149247692 149247692 C T MBD5 Silent p.F1264F 0.17 TCGA-FR-A3YO-06 2 149528364 149528364 C T EPC2 Missense_Mutation p.R412C 0.37 tolerated(0.11) benign(0.005) TCGA-FR-A3YO-06 2 152534098 152534098 T A NEB Missense_Mutation p.N1252I 0.18 probably_damaging(0.998) TCGA-FR-A3YO-06 2 159035459 159035459 C T CCDC148 Missense_Mutation p.E474K 0.27 tolerated(0.13) possibly_damaging(0.801) TCGA-FR-A3YO-06 2 166210777 166210777 G A SCN2A Missense_Mutation p.E999K 0.28 deleterious(0.02) possibly_damaging(0.767) TCGA-FR-A3YO-06 2 166758373 166758373 C T TTC21B Silent p.Q872Q 0.19 TCGA-FR-A3YO-06 2 166894560 166894560 C T SCN1A Missense_Mutation p.G891E 0.25 deleterious(0) probably_damaging(0.989) TCGA-FR-A3YO-06 2 166895983 166895983 G T SCN1A Missense_Mutation p.L847I 0.11 deleterious(0.02) possibly_damaging(0.646) TCGA-FR-A3YO-06 2 166901717 166901717 G A SCN1A Missense_Mutation p.R500W 0.13 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A3YO-06 2 167298170 167298170 G A SCN7A Silent p.V631V 0.27 TCGA-FR-A3YO-06 2 168108332 168108332 G A XIRP2 Missense_Mutation p.R3477K 0.12 benign(0.023) TCGA-FR-A3YO-06 2 168115575 168115575 C T XIRP2 3'UTR 0.14 TCGA-FR-A3YO-06 2 169681154 169681154 G A NOSTRIN Missense_Mutation p.E42K 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 2 170361111 170361111 G A BBS5 3'UTR 0.19 TCGA-FR-A3YO-06 2 17846827 17846827 C T SMC6 Missense_Mutation p.R1072K 0.23 tolerated(0.08) benign(0.272) TCGA-FR-A3YO-06 2 179429924 179429924 G A TTN Missense_Mutation p.P26979S 0.31 TCGA-FR-A3YO-06 2 179455005 179455005 G A TTN Missense_Mutation p.R20483C 0.13 TCGA-FR-A3YO-06 2 179473519 179473519 C T TTN Missense_Mutation p.E17407K 0.29 TCGA-FR-A3YO-06 2 179485285 179485285 G A TTN Silent p.F15321F 0.10 TCGA-FR-A3YO-06 2 179495831 179495831 C T TTN Silent p.L14648L 0.11 TCGA-FR-A3YO-06 2 179495927 179495927 C T TTN Silent p.V14616V 0.24 TCGA-FR-A3YO-06 2 179582476 179582476 G A TTN Silent p.F8375F 0.24 TCGA-FR-A3YO-06 2 179586690 179586690 C T TTN Missense_Mutation p.G7567E 0.24 TCGA-FR-A3YO-06 2 179595650 179595650 A G TTN Splice_Site p.X5914_splice 0.18 TCGA-FR-A3YO-06 2 179611050 179611050 C T TTN Intron 0.16 TCGA-FR-A3YO-06 2 179637909 179637909 C T TTN Missense_Mutation p.M2594I 0.22 TCGA-FR-A3YO-06 2 179640777 179640777 G A TTN Silent p.V1938V 0.24 TCGA-FR-A3YO-06 2 179641861 179641861 T A TTN Intron 0.31 TCGA-FR-A3YO-06 2 182374525 182374525 G A ITGA4 Missense_Mutation p.M612I 0.19 tolerated(1) benign(0) TCGA-FR-A3YO-06 2 18765866 18765866 C T NT5C1B Missense_Mutation p.E273K 0.29 tolerated_low_confidence(0.09) benign(0.004) TCGA-FR-A3YO-06 2 188223985 188223985 G A CALCRL Missense_Mutation p.P266S 0.20 deleterious(0.02) possibly_damaging(0.809) TCGA-FR-A3YO-06 2 190532172 190532172 G T ASNSD1 Missense_Mutation p.Q438H 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-FR-A3YO-06 2 202149719 202149719 G A CASP8 Missense_Mutation p.G387E 0.27 tolerated(0.2) probably_damaging(0.999) TCGA-FR-A3YO-06 2 203807618 203807618 C T CARF Silent p.F78F 0.16 TCGA-FR-A3YO-06 2 206305377 206305377 C A PARD3B Missense_Mutation p.P947T 0.29 deleterious(0) possibly_damaging(0.645) TCGA-FR-A3YO-06 2 206305378 206305378 C T PARD3B Missense_Mutation p.P947L 0.29 deleterious(0) possibly_damaging(0.645) TCGA-FR-A3YO-06 2 207174649 207174649 G A ZDBF2 Silent p.R1799R 0.26 TCGA-FR-A3YO-06 2 207509254 207509254 C T AC010731.4 RNA 0.21 TCGA-FR-A3YO-06 2 211163268 211163268 G A MYL1 Silent p.L60L 0.22 TCGA-FR-A3YO-06 2 21227189 21227189 C T APOB Missense_Mutation p.M4013I 0.21 benign(0) TCGA-FR-A3YO-06 2 21249823 21249823 C T APOB Missense_Mutation p.G694E 0.30 probably_damaging(1) TCGA-FR-A3YO-06 2 213921627 213921627 C T IKZF2 Silent p.L112L 0.23 TCGA-FR-A3YO-06 2 215890456 215890456 G A ABCA12 Missense_Mutation p.L410F 0.14 tolerated(0.35) benign(0.011) TCGA-FR-A3YO-06 2 216923647 216923647 G A PECR Silent p.V159V 0.21 TCGA-FR-A3YO-06 2 220037323 220037323 G A CNPPD1 Silent p.F406F 0.18 TCGA-FR-A3YO-06 2 220500130 220500130 C T SLC4A3 Silent p.F655F 0.25 TCGA-FR-A3YO-06 2 224822295 224822295 C T MRPL44 Missense_Mutation p.R36C 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A3YO-06 2 228883076 228883076 C T SPHKAP Missense_Mutation p.E832K 0.13 tolerated(0.73) benign(0.05) TCGA-FR-A3YO-06 2 230231587 230231587 A G DNER Splice_Site p.X701_splice 0.22 TCGA-FR-A3YO-06 2 230861559 230861559 G A FBXO36 Missense_Mutation p.D100N 0.11 tolerated(0.91) benign(0.003) TCGA-FR-A3YO-06 2 234072405 234072405 G A INPP5D Silent p.Q419Q 0.24 TCGA-FR-A3YO-06 2 234113039 234113039 C T INPP5D Silent p.P1069P 0.12 TCGA-FR-A3YO-06 2 235950649 235950649 C T SH3BP4 Silent p.G412G 0.20 TCGA-FR-A3YO-06 2 240016640 240016640 G A HDAC4 Intron 0.23 TCGA-FR-A3YO-06 2 26997180 26997180 C T SLC35F6 Missense_Mutation p.P47S 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A3YO-06 2 27423917 27423917 G A SLC5A6 Silent p.S571S 0.14 TCGA-FR-A3YO-06 2 27800117 27800117 G A C2orf16 Silent p.E226E 0.29 TCGA-FR-A3YO-06 2 27887074 27887074 C T SLC4A1AP Missense_Mutation p.P152L 0.15 tolerated(0.45) benign(0.002) TCGA-FR-A3YO-06 2 28854959 28854959 G A PLB1 Silent p.A1318A 0.25 TCGA-FR-A3YO-06 2 31147108 31147108 G A GALNT14 Silent p.I424I 0.24 TCGA-FR-A3YO-06 2 31754406 31754406 G A AL133247.2 Intron 0.29 TCGA-FR-A3YO-06 2 33783747 33783747 G A RASGRP3 Missense_Mutation p.E572K 0.35 tolerated(0.06) benign(0.108) TCGA-FR-A3YO-06 2 37475402 37475402 G A NDUFAF7 Missense_Mutation p.R412K 0.28 tolerated(0.12) possibly_damaging(0.562) TCGA-FR-A3YO-06 2 50464105 50464105 C T NRXN1 Missense_Mutation p.G1163E 0.23 deleterious(0.01) possibly_damaging(0.843) TCGA-FR-A3YO-06 2 50573894 50573894 C T NRXN1 Intron 0.22 TCGA-FR-A3YO-06 2 50779774 50779774 C T NRXN1 Silent p.V610V 0.27 TCGA-FR-A3YO-06 2 51254945 51254945 C T NRXN1 Missense_Mutation p.G156E 0.21 deleterious(0) probably_damaging(0.993) TCGA-FR-A3YO-06 2 51254946 51254946 C T NRXN1 Missense_Mutation p.G156R 0.21 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YO-06 2 55473528 55473528 G A MTIF2 Missense_Mutation p.P351S 0.35 tolerated(0.13) benign(0.005) TCGA-FR-A3YO-06 2 55791485 55791485 G A SMEK2 Missense_Mutation p.P742S 0.45 tolerated(0.42) benign(0.009) TCGA-FR-A3YO-06 2 60687762 60687762 C T BCL11A Missense_Mutation p.R762K 0.22 deleterious(0.02) probably_damaging(0.928) TCGA-FR-A3YO-06 2 71894639 71894639 C T DYSF Silent p.I1817I 0.40 TCGA-FR-A3YO-06 2 73717425 73717425 C T ALMS1 Missense_Mutation p.S2779L 0.22 benign(0.429) TCGA-FR-A3YO-06 2 74042492 74042492 G A C2orf78 Missense_Mutation p.G381E 0.37 tolerated(1) benign(0.001) TCGA-FR-A3YO-06 2 74452086 74452086 A G SLC4A5 Missense_Mutation p.F1059L 0.21 tolerated(0.75) benign(0.001) TCGA-FR-A3YO-06 2 80874951 80874951 C T CTNNA2 Missense_Mutation p.S891L 0.21 deleterious(0.03) possibly_damaging(0.537) TCGA-FR-A3YO-06 2 86831120 86831120 A T RNF103 Missense_Mutation p.M635K 0.20 deleterious(0.05) benign(0.14) TCGA-FR-A3YO-06 2 89247075 89247075 G A IGKV1-5 Missense_Mutation p.T32I 0.26 deleterious(0.02) benign(0.005) TCGA-FR-A3YO-06 2 89278240 89278240 G A IGKV3-7 Missense_Mutation p.S32F 0.20 deleterious(0.01) benign(0.125) TCGA-FR-A3YO-06 2 89442112 89442112 C T IGKV3-20 Missense_Mutation p.R98K 0.07 tolerated(0.14) benign(0.018) TCGA-FR-A3YO-06 2 98353964 98353964 G A ZAP70 Missense_Mutation p.E440K 0.06 deleterious(0.02) possibly_damaging(0.902) TCGA-FR-A3YO-06 2 98453599 98453599 C A TMEM131 Nonsense_Mutation p.G249* 0.21 TCGA-FR-A3YO-06 2 98453600 98453600 A G TMEM131 Silent p.S248S 0.23 TCGA-FR-A3YO-06 2 99013661 99013661 C T CNGA3 Silent p.P676P 0.13 TCGA-FR-A3YO-06 2 99155400 99155400 G A INPP4A Missense_Mutation p.R209Q 0.09 tolerated(0.18) benign(0.147) TCGA-FR-A3YO-06 2 99681554 99681554 G A TSGA10 Nonsense_Mutation p.R418* 0.22 TCGA-FR-A3YO-06 3 102183030 102183030 G A ZPLD1 Missense_Mutation p.M248I 0.18 deleterious(0.01) possibly_damaging(0.729) TCGA-FR-A3YO-06 3 10254918 10254918 G A IRAK2 Missense_Mutation p.E186K 0.16 tolerated(0.05) benign(0.259) TCGA-FR-A3YO-06 3 105439016 105439016 G A CBLB Missense_Mutation p.P428S 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A3YO-06 3 107096619 107096619 G A CCDC54 Missense_Mutation p.G62E 0.19 tolerated(1) benign(0) TCGA-FR-A3YO-06 3 108076945 108076945 G A HHLA2 Missense_Mutation p.E314K 0.34 tolerated(0.06) possibly_damaging(0.501) TCGA-FR-A3YO-06 3 108396404 108396404 C T DZIP3 Missense_Mutation p.P948S 0.21 tolerated(0.05) probably_damaging(0.954) TCGA-FR-A3YO-06 3 108541697 108541697 G A TRAT1 5'UTR 0.26 TCGA-FR-A3YO-06 3 10976793 10976793 G A SLC6A11 Missense_Mutation p.G552S 0.13 tolerated(0.18) benign(0.036) TCGA-FR-A3YO-06 3 111432914 111432914 C T PLCXD2 Missense_Mutation p.P269S 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 3 111887905 111887905 C T SLC9C1 Nonsense_Mutation p.W1019* 0.20 TCGA-FR-A3YO-06 3 112738393 112738393 G A C3orf17 Silent p.A34A 0.19 TCGA-FR-A3YO-06 3 120053969 120053969 G A LRRC58 Missense_Mutation p.S216F 0.20 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 3 120952509 120952509 C T STXBP5L Silent p.L386L 0.13 TCGA-FR-A3YO-06 3 121659245 121659245 G A SLC15A2 Missense_Mutation p.M641I 0.25 deleterious(0) probably_damaging(0.978) TCGA-FR-A3YO-06 3 123366075 123366075 C T MYLK Missense_Mutation p.E1539K 0.08 deleterious(0) possibly_damaging(0.56) TCGA-FR-A3YO-06 3 12475702 12475702 G A PPARG 3'UTR 0.16 TCGA-FR-A3YO-06 3 126710399 126710399 G A PLXNA1 Missense_Mutation p.R456H 0.10 tolerated(0.66) possibly_damaging(0.76) TCGA-FR-A3YO-06 3 128182007 128182007 G A DNAJB8 Missense_Mutation p.L28F 0.12 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 3 128182008 128182008 G A DNAJB8 Silent p.A27A 0.12 TCGA-FR-A3YO-06 3 129198697 129198697 C T IFT122 Missense_Mutation p.R525C 0.13 deleterious(0.01) benign(0.092) TCGA-FR-A3YO-06 3 130095241 130095241 G A COL6A5 Missense_Mutation p.E77K 0.30 tolerated(0.99) benign(0.001) TCGA-FR-A3YO-06 3 130095498 130095498 G A COL6A5 Silent p.V162V 0.19 TCGA-FR-A3YO-06 3 130293060 130293060 G A COL6A6 Missense_Mutation p.G1080S 0.24 deleterious(0.03) probably_damaging(1) TCGA-FR-A3YO-06 3 130851631 130851631 G A NEK11 Silent p.L166L 0.30 TCGA-FR-A3YO-06 3 132047150 132047150 C T ACPP Missense_Mutation p.P54S 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 3 133494345 133494345 A T TF Missense_Mutation p.T586S 0.12 tolerated(0.48) benign(0.002) TCGA-FR-A3YO-06 3 137743566 137743566 G A CLDN18 Missense_Mutation p.R168K 0.32 tolerated(0.31) probably_damaging(0.983) TCGA-FR-A3YO-06 3 138023745 138023745 G A NME9 Missense_Mutation p.P193L 0.37 tolerated(0.25) benign(0.381) TCGA-FR-A3YO-06 3 141163288 141163288 C T ZBTB38 Silent p.L686L 0.36 TCGA-FR-A3YO-06 3 142680916 142680916 C T PAQR9 3'UTR 0.15 TCGA-FR-A3YO-06 3 14485349 14485349 C T SLC6A6 Silent p.Y69Y 0.19 TCGA-FR-A3YO-06 3 145912223 145912223 C T PLSCR4 Missense_Mutation p.R322K 0.36 tolerated(1) benign(0.243) TCGA-FR-A3YO-06 3 148583260 148583260 G A CPA3 Silent p.R23R 0.37 TCGA-FR-A3YO-06 3 14958785 14958785 C T FGD5 Silent p.P1145P 0.11 TCGA-FR-A3YO-06 3 151155688 151155688 C T IGSF10 Missense_Mutation p.D2221N 0.24 deleterious(0.02) probably_damaging(0.93) TCGA-FR-A3YO-06 3 151502007 151502007 C T RP11-454C18.2 Intron 0.30 TCGA-FR-A3YO-06 3 151531940 151531940 G A AADAC 5'UTR 0.08 TCGA-FR-A3YO-06 3 15345738 15345738 C T SH3BP5 Missense_Mutation p.D68N 0.11 deleterious(0) possibly_damaging(0.506) TCGA-FR-A3YO-06 3 154898318 154898318 G A MME 3'UTR 0.27 TCGA-FR-A3YO-06 3 155643121 155643121 C T GMPS Missense_Mutation p.A509V 0.07 tolerated(0.05) probably_damaging(0.978) TCGA-FR-A3YO-06 3 157839901 157839901 G A RSRC1 Missense_Mutation p.R3H 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A3YO-06 3 158314672 158314672 C T MLF1 Nonsense_Mutation p.Q104* 0.29 TCGA-FR-A3YO-06 3 158523177 158523177 C T MFSD1 Silent p.F130F 0.09 TCGA-FR-A3YO-06 3 172634262 172634262 G A SPATA16 Missense_Mutation p.P450S 0.30 tolerated(0.41) possibly_damaging(0.803) TCGA-FR-A3YO-06 3 183521106 183521106 A G YEATS2 Missense_Mutation p.K1189E 0.32 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YO-06 3 183639082 183639082 G A ABCC5 3'UTR 0.12 TCGA-FR-A3YO-06 3 183975448 183975448 C T ECE2 Silent p.L128L 0.38 TCGA-FR-A3YO-06 3 184922295 184922295 G A EHHADH Silent p.F273F 0.09 TCGA-FR-A3YO-06 3 186300545 186300545 C T DNAJB11 Silent p.F241F 0.34 TCGA-FR-A3YO-06 3 186502861 186502861 T C EIF4A2 Silent p.L107L 0.19 TCGA-FR-A3YO-06 3 189706738 189706738 G A LEPREL1 Missense_Mutation p.L305F 0.24 deleterious(0.03) possibly_damaging(0.635) TCGA-FR-A3YO-06 3 193096512 193096512 C T ATP13A5 Translation_Start_Site p.M1? 0.21 deleterious(0) probably_damaging(0.968) TCGA-FR-A3YO-06 3 24138594 24138594 G A LINC00691 RNA 0.10 TCGA-FR-A3YO-06 3 2613201 2613201 G A CNTN4 Nonsense_Mutation p.W5* 0.30 TCGA-FR-A3YO-06 3 2613202 2613202 G A CNTN4 Nonsense_Mutation p.W5* 0.31 TCGA-FR-A3YO-06 3 32932625 32932625 C T TRIM71 Silent p.F643F 0.13 TCGA-FR-A3YO-06 3 36898966 36898966 G A TRANK1 Silent p.F705F 0.33 TCGA-FR-A3YO-06 3 38743415 38743415 G A SCN10A Silent p.V1524V 0.33 TCGA-FR-A3YO-06 3 38770200 38770200 C T SCN10A Missense_Mutation p.E825K 0.18 tolerated(0.51) benign(0.155) TCGA-FR-A3YO-06 3 38888901 38888901 C T SCN11A Missense_Mutation p.D1554N 0.20 deleterious(0.01) possibly_damaging(0.841) TCGA-FR-A3YO-06 3 39307608 39307608 G A CX3CR1 Silent p.I163I 0.34 TCGA-FR-A3YO-06 3 39555057 39555057 G A MOBP 3'UTR 0.36 TCGA-FR-A3YO-06 3 44926878 44926878 G A TGM4 Nonsense_Mutation p.W27* 0.31 TCGA-FR-A3YO-06 3 44945382 44945382 C T TGM4 Silent p.F326F 0.19 TCGA-FR-A3YO-06 3 45135121 45135121 C T CDCP1 Silent p.R425R 0.11 TCGA-FR-A3YO-06 3 47163476 47163476 G A SETD2 Nonsense_Mutation p.Q884* 0.19 TCGA-FR-A3YO-06 3 49321428 49321428 G A USP4 Silent p.F844F 0.10 TCGA-FR-A3YO-06 3 49714371 49714371 C T APEH Missense_Mutation p.P305S 0.31 deleterious(0) probably_damaging(0.994) TCGA-FR-A3YO-06 3 50645558 50645558 G A CISH Missense_Mutation p.S103F 0.24 deleterious(0) probably_damaging(0.987) TCGA-FR-A3YO-06 3 51418793 51418793 G A DOCK3 Missense_Mutation p.D1966N 0.09 tolerated_low_confidence(0.39) benign(0.055) TCGA-FR-A3YO-06 3 51517846 51517846 G A VPRBP 5'UTR 0.10 TCGA-FR-A3YO-06 3 51749080 51749080 C T GRM2 Missense_Mutation p.P431S 0.16 tolerated(0.5) possibly_damaging(0.515) TCGA-FR-A3YO-06 3 51749081 51749081 C T GRM2 Missense_Mutation p.P431L 0.16 tolerated(0.65) possibly_damaging(0.597) TCGA-FR-A3YO-06 3 52668785 52668785 G A PBRM1 Silent p.S378S 0.32 TCGA-FR-A3YO-06 3 52815970 52815970 C T ITIH1 Silent p.F234F 0.11 TCGA-FR-A3YO-06 3 53845343 53845343 C T CACNA1D Silent p.D2152D 0.10 TCGA-FR-A3YO-06 3 58109366 58109366 G C FLNB Missense_Mutation p.A1225P 0.19 tolerated(0.12) probably_damaging(0.913) TCGA-FR-A3YO-06 3 62189579 62189579 G A PTPRG Missense_Mutation p.G704R 0.19 tolerated(0.09) benign(0.166) TCGA-FR-A3YO-06 3 65456128 65456128 G A MAGI1 Silent p.L263L 0.11 TCGA-FR-A3YO-06 3 7188302 7188302 G A GRM7 Missense_Mutation p.G228E 0.12 deleterious(0) probably_damaging(0.927) TCGA-FR-A3YO-06 3 97868872 97868872 C T OR5H14 Missense_Mutation p.L215F 0.30 deleterious(0.05) benign(0.108) TCGA-FR-A3YO-06 4 109782121 109782121 G A COL25A1 Missense_Mutation p.R402C 0.08 deleterious(0.03) probably_damaging(0.935) TCGA-FR-A3YO-06 4 115998159 115998159 G A NDST4 Nonsense_Mutation p.R12* 0.28 TCGA-FR-A3YO-06 4 119951558 119951558 C T SYNPO2 Missense_Mutation p.S543L 0.36 deleterious(0.04) benign(0.279) TCGA-FR-A3YO-06 4 120072035 120072035 G A MYOZ2 Missense_Mutation p.G29S 0.40 tolerated(0.7) benign(0.023) TCGA-FR-A3YO-06 4 1244582 1244582 C T CTBP1 5'Flank 0.21 TCGA-FR-A3YO-06 4 126237690 126237690 G A FAT4 Missense_Mutation p.G42R 0.15 benign(0.151) TCGA-FR-A3YO-06 4 126237691 126237691 G A FAT4 Missense_Mutation p.G42E 0.15 benign(0.05) TCGA-FR-A3YO-06 4 126242614 126242614 T C FAT4 Missense_Mutation p.I1683T 0.14 possibly_damaging(0.87) TCGA-FR-A3YO-06 4 126372180 126372180 A C FAT4 Missense_Mutation p.I3337L 0.39 benign(0.059) TCGA-FR-A3YO-06 4 139140424 139140424 C T SLC7A11 Missense_Mutation p.G248S 0.07 deleterious(0) probably_damaging(0.96) TCGA-FR-A3YO-06 4 141543667 141543667 G A TBC1D9 Silent p.S1161S 0.17 TCGA-FR-A3YO-06 4 141590103 141590103 C T TBC1D9 Missense_Mutation p.S519N 0.16 tolerated(0.19) benign(0.006) TCGA-FR-A3YO-06 4 145628356 145628356 C T HHIP Silent p.I367I 0.12 TCGA-FR-A3YO-06 4 145636515 145636515 C T HHIP Silent p.L537L 0.16 TCGA-FR-A3YO-06 4 147796027 147796027 C T TTC29 Missense_Mutation p.G214R 0.12 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 4 149357204 149357204 G A NR3C2 Missense_Mutation p.S270F 0.13 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-FR-A3YO-06 4 155505313 155505313 G A FGA Missense_Mutation p.A855V 0.11 tolerated(0.71) benign(0.229) TCGA-FR-A3YO-06 4 156281454 156281454 G A MAP9 Nonsense_Mutation p.Q306* 0.16 TCGA-FR-A3YO-06 4 159514625 159514625 C T RXFP1 Missense_Mutation p.P87L 0.25 tolerated(0.64) benign(0) TCGA-FR-A3YO-06 4 169337870 169337870 G A DDX60L Missense_Mutation p.L897F 0.13 deleterious(0) probably_damaging(0.996) TCGA-FR-A3YO-06 4 17832625 17832625 T C NCAPG Silent p.L590L 0.21 TCGA-FR-A3YO-06 4 185074772 185074772 C T ENPP6 Missense_Mutation p.G119E 0.09 tolerated(0.08) probably_damaging(1) TCGA-FR-A3YO-06 4 189018259 189018259 A G TRIML2 Missense_Mutation p.L184S 0.14 tolerated(0.25) benign(0.047) TCGA-FR-A3YO-06 4 189061765 189061765 G A TRIML1 Silent p.V164V 0.15 TCGA-FR-A3YO-06 4 20598128 20598128 C T SLIT2 Silent p.I1137I 0.15 TCGA-FR-A3YO-06 4 2306499 2306499 G A ZFYVE28 Missense_Mutation p.S523L 0.13 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-FR-A3YO-06 4 38698843 38698843 G C KLF3 Missense_Mutation p.D333H 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 4 39184102 39184102 G A WDR19 5'UTR 0.24 TCGA-FR-A3YO-06 4 39308225 39308225 G A RFC1 Missense_Mutation p.S662F 0.20 deleterious(0.03) benign(0.285) TCGA-FR-A3YO-06 4 39482601 39482601 C T LIAS 3'Flank 0.18 TCGA-FR-A3YO-06 4 41691585 41691585 C T LIMCH1 Missense_Mutation p.P1019L 0.16 deleterious(0) possibly_damaging(0.555) TCGA-FR-A3YO-06 4 47405684 47405684 C T GABRB1 Missense_Mutation p.S264F 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 4 47944165 47944165 C T CNGA1 Silent p.E219E 0.16 TCGA-FR-A3YO-06 4 49052842 49052842 C T CWH43 Missense_Mutation p.S666F 0.28 deleterious(0) benign(0.024) TCGA-FR-A3YO-06 4 52960700 52960700 G A SPATA18 Missense_Mutation p.R524Q 0.40 tolerated(0.06) probably_damaging(0.947) TCGA-FR-A3YO-06 4 53234 53234 G C ZNF595 5'UTR 0.07 TCGA-FR-A3YO-06 4 57797279 57797279 C T REST Missense_Mutation p.P752L 0.14 tolerated_low_confidence(0.07) benign(0.005) TCGA-FR-A3YO-06 4 66280068 66280068 G A EPHA5 Nonsense_Mutation p.R541* 0.41 TCGA-FR-A3YO-06 4 69185919 69185919 G A YTHDC1 Nonsense_Mutation p.R536* 0.22 TCGA-FR-A3YO-06 4 70146513 70146513 G A UGT2B28 Missense_Mutation p.D99N 0.13 tolerated(0.79) benign(0.008) TCGA-FR-A3YO-06 4 74853792 74853792 G A PPBP Missense_Mutation p.S10F 0.06 tolerated(0.68) benign(0.045) TCGA-FR-A3YO-06 4 79373445 79373445 G A FRAS1 Missense_Mutation p.E2234K 0.09 benign(0.006) TCGA-FR-A3YO-06 4 80975499 80975499 C T ANTXR2 Missense_Mutation p.R188K 0.31 tolerated(0.63) benign(0.002) TCGA-FR-A3YO-06 4 83381306 83381306 C T ENOPH1 3'UTR 0.07 TCGA-FR-A3YO-06 4 83740189 83740191 GAA - SEC31A 3'UTR 0.63 TCGA-FR-A3YO-06 4 8621299 8621299 C T CPZ Silent p.F638F 0.15 TCGA-FR-A3YO-06 4 91549210 91549210 C T CCSER1 Nonsense_Mutation p.Q587* 0.15 TCGA-FR-A3YO-06 4 94316860 94316860 G A GRID2 Splice_Site p.X449_splice 0.11 TCGA-FR-A3YO-06 4 947051 947051 C T TMEM175 Missense_Mutation p.A179V 0.22 tolerated(0.26) benign(0.015) TCGA-FR-A3YO-06 4 96762039 96762039 T A PDHA2 Missense_Mutation p.F246L 0.33 deleterious(0.03) possibly_damaging(0.552) TCGA-FR-A3YO-06 5 102284087 102284087 C T PAM Missense_Mutation p.P194L 0.20 deleterious(0) possibly_damaging(0.572) TCGA-FR-A3YO-06 5 111500629 111500629 C T EPB41L4A 3'UTR 0.17 TCGA-FR-A3YO-06 5 115346520 115346520 G A AQPEP Missense_Mutation p.V726I 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-FR-A3YO-06 5 115782742 115782742 G A SEMA6A Missense_Mutation p.S887F 0.18 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 5 126781188 126781188 G A MEGF10 Missense_Mutation p.R844Q 0.14 deleterious(0.02) benign(0.002) TCGA-FR-A3YO-06 5 127518608 127518608 A G SLC12A2 Missense_Mutation p.I1092V 0.12 tolerated(0.12) benign(0.034) TCGA-FR-A3YO-06 5 135601986 135601986 C T TRPC7 Missense_Mutation p.D423N 0.16 deleterious(0.03) benign(0.03) TCGA-FR-A3YO-06 5 13719166 13719166 G A DNAH5 Silent p.F4108F 0.17 TCGA-FR-A3YO-06 5 13753443 13753443 C T DNAH5 Missense_Mutation p.G3591R 0.16 probably_damaging(0.988) TCGA-FR-A3YO-06 5 13753560 13753560 C T DNAH5 Missense_Mutation p.A3552T 0.25 possibly_damaging(0.483) TCGA-FR-A3YO-06 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.19 possibly_damaging(0.898) TCGA-FR-A3YO-06 5 140012422 140012422 G A CD14 Silent p.F49F 0.17 TCGA-FR-A3YO-06 5 140188012 140188012 G A PCDHA4 Missense_Mutation p.D414N 0.14 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FR-A3YO-06 5 140189074 140189074 G A PCDHA4 Missense_Mutation p.D768N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-FR-A3YO-06 5 140222473 140222473 C T PCDHA8 Silent p.L523L 0.20 TCGA-FR-A3YO-06 5 140230000 140230000 G A PCDHA9 Silent p.T640T 0.16 TCGA-FR-A3YO-06 5 140516175 140516175 G A PCDHB5 Missense_Mutation p.D387N 0.16 tolerated_low_confidence(0.41) benign(0.003) TCGA-FR-A3YO-06 5 140572058 140572058 C T PCDHB10 5'UTR 0.11 TCGA-FR-A3YO-06 5 140725946 140725946 G A PCDHGA3 Silent p.Q782Q 0.17 TCGA-FR-A3YO-06 5 140735963 140735963 G A PCDHGA4 Missense_Mutation p.G399E 0.23 tolerated_low_confidence(0.1) benign(0.364) TCGA-FR-A3YO-06 5 140744698 140744698 G A PCDHGA5 Silent p.T267T 0.16 TCGA-FR-A3YO-06 5 140783203 140783203 C T PCDHGA9 Silent p.I228I 0.14 TCGA-FR-A3YO-06 5 142602082 142602082 C T ARHGAP26 3'UTR 0.22 TCGA-FR-A3YO-06 5 145442215 145442215 C T SH3RF2 Missense_Mutation p.T714I 0.13 tolerated_low_confidence(0.06) benign(0.004) TCGA-FR-A3YO-06 5 145883392 145883392 A C TCERG1 Missense_Mutation p.L851F 0.15 tolerated(0.1) unknown(0) TCGA-FR-A3YO-06 5 147040990 147040990 C T JAKMIP2 Missense_Mutation p.E50K 0.16 deleterious(0) benign(0.158) TCGA-FR-A3YO-06 5 147889486 147889486 G A HTR4 Silent p.I203I 0.23 TCGA-FR-A3YO-06 5 149357872 149357872 T C SLC26A2 Silent p.I219I 0.22 TCGA-FR-A3YO-06 5 1593309 1593309 G A CTD-2012J19.3 5'Flank 0.14 TCGA-FR-A3YO-06 5 160721145 160721145 G A GABRB2 Silent p.F494F 0.14 TCGA-FR-A3YO-06 5 161292770 161292770 C T GABRA1 Silent p.F77F 0.19 TCGA-FR-A3YO-06 5 167675200 167675200 T A TENM2 Missense_Mutation p.L2419Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 5 167835597 167835597 C T WWC1 Missense_Mutation p.S269L 0.19 tolerated(0.06) possibly_damaging(0.514) TCGA-FR-A3YO-06 5 169532974 169532974 G A FOXI1 Missense_Mutation p.D5N 0.09 tolerated(0.1) benign(0.043) TCGA-FR-A3YO-06 5 169533060 169533060 G A FOXI1 Silent p.E33E 0.19 TCGA-FR-A3YO-06 5 171554388 171554388 G A STK10 Missense_Mutation p.A120V 0.12 deleterious(0) possibly_damaging(0.447) TCGA-FR-A3YO-06 5 176710809 176710809 C T NSD1 Missense_Mutation p.P2011S 0.17 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 5 178541229 178541229 G A ADAMTS2 Missense_Mutation p.S1092F 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A3YO-06 5 179306737 179306737 G A TBC1D9B Missense_Mutation p.P436L 0.11 tolerated(0.14) benign(0.001) TCGA-FR-A3YO-06 5 180374721 180374721 C T BTNL8 Intron 0.17 TCGA-FR-A3YO-06 5 23509642 23509642 G A PRDM9 Missense_Mutation p.D45N 0.14 deleterious_low_confidence(0) benign(0.066) TCGA-FR-A3YO-06 5 2749815 2749815 G T IRX2 Silent p.L112L 0.11 TCGA-FR-A3YO-06 5 31323360 31323360 G A CDH6 Missense_Mutation p.R773Q 0.15 tolerated(0.06) probably_damaging(0.992) TCGA-FR-A3YO-06 5 35032909 35032909 G A AGXT2 Missense_Mutation p.R233C 0.30 deleterious(0.01) probably_damaging(0.927) TCGA-FR-A3YO-06 5 36035824 36035824 C T UGT3A2 Silent p.G516G 0.26 TCGA-FR-A3YO-06 5 39377300 39377300 C T DAB2 Missense_Mutation p.G530E 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-FR-A3YO-06 5 41000803 41000803 C T MROH2B Missense_Mutation p.D1443N 0.14 deleterious(0.01) possibly_damaging(0.608) TCGA-FR-A3YO-06 5 41154021 41154021 G A C6 Silent p.S727S 0.28 TCGA-FR-A3YO-06 5 41158845 41158845 G A C6 Silent p.V633V 0.31 TCGA-FR-A3YO-06 5 42718780 42718780 G A GHR Missense_Mutation p.E391K 0.15 deleterious(0.01) benign(0.302) TCGA-FR-A3YO-06 5 44305142 44305142 C T FGF10 Silent p.R194R 0.14 TCGA-FR-A3YO-06 5 45353240 45353240 C T HCN1 Missense_Mutation p.E447K 0.15 tolerated(0.08) benign(0.026) TCGA-FR-A3YO-06 5 45461956 45461956 C T HCN1 Missense_Mutation p.E335K 0.14 tolerated(1) benign(0.001) TCGA-FR-A3YO-06 5 50689457 50689457 C T ISL1 3'UTR 0.20 TCGA-FR-A3YO-06 5 52160894 52160894 G A ITGA1 Silent p.V158V 0.20 TCGA-FR-A3YO-06 5 54416373 54416373 C T CDC20B Missense_Mutation p.M407I 0.14 tolerated(0.22) benign(0.005) TCGA-FR-A3YO-06 5 55204123 55204123 A T IL31RA Missense_Mutation p.E462V 0.24 deleterious(0.01) benign(0.059) TCGA-FR-A3YO-06 5 64447612 64447612 G A ADAMTS6 3'UTR 0.21 TCGA-FR-A3YO-06 5 66410003 66410003 G A MAST4 Missense_Mutation p.R516K 0.09 possibly_damaging(0.583) TCGA-FR-A3YO-06 5 70805905 70805905 G A BDP1 Missense_Mutation p.E996K 0.19 tolerated(0.12) benign(0.131) TCGA-FR-A3YO-06 5 78359585 78359585 C T DMGDH Missense_Mutation p.E43K 0.11 tolerated_low_confidence(0.7) benign(0.021) TCGA-FR-A3YO-06 5 78734856 78734856 C T HOMER1 Silent p.Q168Q 0.15 TCGA-FR-A3YO-06 5 865586 865586 G A BRD9 Missense_Mutation p.P546S 0.12 deleterious(0.02) possibly_damaging(0.881) TCGA-FR-A3YO-06 5 87492051 87492051 G A TMEM161B Missense_Mutation p.H481Y 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-FR-A3YO-06 5 9042936 9042936 G A SEMA5A 3'UTR 0.11 TCGA-FR-A3YO-06 5 94248555 94248555 G A MCTP1 Missense_Mutation p.P493S 0.17 tolerated(0.06) probably_damaging(1) TCGA-FR-A3YO-06 5 94259666 94259666 C T MCTP1 Splice_Site p.X424_splice 0.11 TCGA-FR-A3YO-06 5 95728975 95728975 G A PCSK1 Silent p.S664S 0.19 TCGA-FR-A3YO-06 6 105609425 105609425 C T POPDC3 Silent p.G120G 0.13 TCGA-FR-A3YO-06 6 109871385 109871385 G A AK9 Nonsense_Mutation p.R958* 0.19 TCGA-FR-A3YO-06 6 114378521 114378521 G A HS3ST5 Missense_Mutation p.P314L 0.18 deleterious(0) probably_damaging(0.97) TCGA-FR-A3YO-06 6 117127686 117127686 C T GPRC6A Silent p.R394R 0.12 TCGA-FR-A3YO-06 6 129833587 129833587 G A LAMA2 Silent p.G2979G 0.14 TCGA-FR-A3YO-06 6 139094905 139094905 C T CCDC28A Missense_Mutation p.R32C 0.25 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-FR-A3YO-06 6 143090789 143090789 G T HIVEP2 Missense_Mutation p.S1696Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 6 145093099 145093099 C T UTRN Missense_Mutation p.S2851F 0.10 deleterious(0) possibly_damaging(0.856) TCGA-FR-A3YO-06 6 151936761 151936761 G A CCDC170 Missense_Mutation p.E632K 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A3YO-06 6 152697599 152697599 C A SYNE1 Missense_Mutation p.V3081F 0.34 possibly_damaging(0.793) TCGA-FR-A3YO-06 6 152697600 152697600 C A SYNE1 Missense_Mutation p.L3080F 0.33 possibly_damaging(0.526) TCGA-FR-A3YO-06 6 153332654 153332654 T C RGS17 3'UTR 0.19 TCGA-FR-A3YO-06 6 158450041 158450041 G A SYNJ2 Nonsense_Mutation p.W156* 0.30 TCGA-FR-A3YO-06 6 159653326 159653326 G A FNDC1 Silent p.R594R 0.23 TCGA-FR-A3YO-06 6 161969941 161969941 G A PARK2 Missense_Mutation p.P343L 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-FR-A3YO-06 6 25261443 25261443 G C RP3-522P13.3 RNA 0.40 TCGA-FR-A3YO-06 6 25581166 25581166 C T LRRC16A Silent p.S919S 0.23 TCGA-FR-A3YO-06 6 26094510 26094510 G A HFE 3'UTR 0.35 TCGA-FR-A3YO-06 6 26104230 26104230 C T HIST1H4C Missense_Mutation p.H19Y 0.14 deleterious(0.03) unknown(0) TCGA-FR-A3YO-06 6 26468151 26468151 C T BTN2A1 Intron 0.11 TCGA-FR-A3YO-06 6 28297379 28297379 G A ZSCAN31 Nonsense_Mutation p.R28* 0.45 TCGA-FR-A3YO-06 6 28501792 28501792 G A GPX5 Missense_Mutation p.D172N 0.36 tolerated(0.09) benign(0.003) TCGA-FR-A3YO-06 6 28543007 28543007 G A SCAND3 Missense_Mutation p.S492L 0.42 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-FR-A3YO-06 6 29080339 29080339 C T OR2J3 Silent p.I224I 0.17 TCGA-FR-A3YO-06 6 29323679 29323679 C T OR5V1 Silent p.V98V 0.10 TCGA-FR-A3YO-06 6 31475216 31475216 C T MICB Missense_Mutation p.P311L 0.14 tolerated(0.69) benign(0.371) TCGA-FR-A3YO-06 6 31678170 31678170 G A LY6G6F Missense_Mutation p.E282K 0.13 deleterious(0) possibly_damaging(0.636) TCGA-FR-A3YO-06 6 31827643 31827643 G A NEU1 Silent p.P367P 0.29 TCGA-FR-A3YO-06 6 31827644 31827644 G A NEU1 Missense_Mutation p.P367L 0.29 deleterious(0) probably_damaging(0.94) TCGA-FR-A3YO-06 6 31919251 31919251 G A CFB Splice_Site p.X1199_splice 0.22 TCGA-FR-A3YO-06 6 31997061 31997061 G A C4B Missense_Mutation p.D1208N 0.14 tolerated(0.13) benign(0.009) TCGA-FR-A3YO-06 6 32030149 32030149 G A TNXB Missense_Mutation p.S2318F 0.16 probably_damaging(0.992) TCGA-FR-A3YO-06 6 33163841 33163841 G A RXRB Intron 0.11 TCGA-FR-A3YO-06 6 33372990 33372990 C T KIFC1 Missense_Mutation p.S373F 0.12 deleterious(0) probably_damaging(0.994) TCGA-FR-A3YO-06 6 34004158 34004158 G A GRM4 Missense_Mutation p.P577S 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A3YO-06 6 35604908 35604908 C T FKBP5 Missense_Mutation p.E45K 0.35 deleterious(0.04) benign(0.066) TCGA-FR-A3YO-06 6 37626066 37626066 C T MDGA1 Missense_Mutation p.G113S 0.39 deleterious(0) probably_damaging(0.937) TCGA-FR-A3YO-06 6 38874114 38874114 C T DNAH8 Silent p.I2876I 0.53 TCGA-FR-A3YO-06 6 39507993 39507993 G A KIF6 Silent p.I477I 0.11 TCGA-FR-A3YO-06 6 42222625 42222625 A C TRERF1 Missense_Mutation p.L874V 0.13 tolerated(0.52) benign(0.364) TCGA-FR-A3YO-06 6 43024176 43024176 G A MRPL2 Silent p.I91I 0.33 TCGA-FR-A3YO-06 6 43543730 43543730 G A XPO5 5'UTR 0.21 TCGA-FR-A3YO-06 6 46826956 46826956 G A GPR116 Missense_Mutation p.S895L 0.13 deleterious(0) possibly_damaging(0.734) TCGA-FR-A3YO-06 6 55216099 55216099 G A GFRAL Missense_Mutation p.G140E 0.12 tolerated(0.66) benign(0.075) TCGA-FR-A3YO-06 6 56418155 56418155 G A DST Silent p.T2522T 0.13 TCGA-FR-A3YO-06 6 56471862 56471862 G A DST Intron 0.39 TCGA-FR-A3YO-06 6 70071218 70071218 G A BAI3 Missense_Mutation p.M1351I 0.17 tolerated(0.48) benign(0) TCGA-FR-A3YO-06 6 70890408 70890408 G A COL19A1 Missense_Mutation p.G923E 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 6 72596868 72596868 G A RIMS1 Missense_Mutation p.E48K 0.25 tolerated(0.06) benign(0.098) TCGA-FR-A3YO-06 6 7565729 7565729 C T DSP Silent p.I305I 0.42 TCGA-FR-A3YO-06 6 76022871 76022871 T C FILIP1 Missense_Mutation p.S893G 0.20 tolerated(0.2) benign(0) TCGA-FR-A3YO-06 6 76640843 76640843 G A IMPG1 Silent p.F690F 0.11 TCGA-FR-A3YO-06 6 80626275 80626275 G A ELOVL4 3'UTR 0.19 TCGA-FR-A3YO-06 6 83866963 83866963 T C DOPEY1 Missense_Mutation p.F2223L 0.12 deleterious(0.03) benign(0.235) TCGA-FR-A3YO-06 6 87994566 87994566 C T GJB7 Nonsense_Mutation p.W22* 0.10 TCGA-FR-A3YO-06 6 93956557 93956557 C T EPHA7 Missense_Mutation p.M893I 0.10 deleterious(0.01) benign(0.095) TCGA-FR-A3YO-06 6 97613200 97613200 G A MMS22L Missense_Mutation p.P1048L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 7 100350096 100350096 C T ZAN Missense_Mutation p.P790S 0.09 unknown(0) TCGA-FR-A3YO-06 7 100681119 100681119 C T MUC17 Missense_Mutation p.S2141L 0.10 unknown(0) TCGA-FR-A3YO-06 7 100883103 100883103 G A FIS1 Missense_Mutation p.S148F 0.33 deleterious(0) unknown(0) TCGA-FR-A3YO-06 7 103050937 103050937 G A SLC26A5 Silent p.V210V 0.10 TCGA-FR-A3YO-06 7 103179761 103179761 C T RELN Missense_Mutation p.G2315E 0.32 tolerated(0.1) probably_damaging(1) TCGA-FR-A3YO-06 7 111368527 111368527 G A DOCK4 Missense_Mutation p.P1902S 0.43 tolerated_low_confidence(0.14) possibly_damaging(0.879) TCGA-FR-A3YO-06 7 11676310 11676310 C T THSD7A Missense_Mutation p.E157K 0.22 tolerated(0.41) benign(0.141) TCGA-FR-A3YO-06 7 117175431 117175431 C T CFTR Nonsense_Mutation p.Q237* 0.08 TCGA-FR-A3YO-06 7 120387884 120387884 G A KCND2 Missense_Mutation p.G622E 0.07 tolerated_low_confidence(0.07) benign(0.017) TCGA-FR-A3YO-06 7 120591176 120591176 C T ING3 Intron 0.48 TCGA-FR-A3YO-06 7 120740002 120740002 C T CPED1 Missense_Mutation p.P258S 0.10 tolerated(0.16) benign(0.01) TCGA-FR-A3YO-06 7 123264798 123264798 T C ASB15 Silent p.F209F 0.11 TCGA-FR-A3YO-06 7 123509272 123509272 C T HYAL4 Silent p.F315F 0.08 TCGA-FR-A3YO-06 7 128475388 128475388 G A FLNC Missense_Mutation p.A121T 0.06 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 7 131888140 131888140 C T PLXNA4 Silent p.V779V 0.53 TCGA-FR-A3YO-06 7 133622720 133622720 C T EXOC4 Missense_Mutation p.R702C 0.10 tolerated(0.08) benign(0.002) TCGA-FR-A3YO-06 7 137255925 137255925 G A DGKI Missense_Mutation p.S648F 0.09 deleterious(0) probably_damaging(0.95) TCGA-FR-A3YO-06 7 137271945 137271945 G A DGKI Silent p.I441I 0.08 TCGA-FR-A3YO-06 7 137761236 137761236 G A AKR1D1 5'UTR 0.57 TCGA-FR-A3YO-06 7 138455971 138455971 C T ATP6V0A4 Missense_Mutation p.E8K 0.08 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 7 138522649 138522649 G A KIAA1549 3'UTR 0.31 TCGA-FR-A3YO-06 7 138824642 138824642 G A TTC26 Missense_Mutation p.E81K 0.09 tolerated(0.56) benign(0.004) TCGA-FR-A3YO-06 7 140246635 140246635 G A DENND2A Silent p.I714I 0.28 TCGA-FR-A3YO-06 7 140453134 140453136 TCA - BRAF In_Frame_Del p.V600_K601delinsE 0.48 TCGA-FR-A3YO-06 7 141752127 141752127 G A MGAM Missense_Mutation p.G947R 0.45 deleterious(0) possibly_damaging(0.868) TCGA-FR-A3YO-06 7 142021239 142021239 G A TRBV5-1 Silent p.Q73Q 0.08 TCGA-FR-A3YO-06 7 142168409 142168409 G A TRBV5-4 Missense_Mutation p.S105L 0.09 deleterious(0) probably_damaging(0.948) TCGA-FR-A3YO-06 7 142459659 142459659 G A PRSS1 Missense_Mutation p.E79K 0.35 tolerated(0.9) benign(0.001) TCGA-FR-A3YO-06 7 143771345 143771345 C T OR2A25 Silent p.F11F 0.07 TCGA-FR-A3YO-06 7 1480265 1480265 C T MICALL2 Silent p.A589A 0.17 TCGA-FR-A3YO-06 7 148523568 148523568 G A EZH2 Silent p.F295F 0.28 TCGA-FR-A3YO-06 7 150269396 150269396 G A GIMAP4 Missense_Mutation p.E80K 0.12 tolerated(0.1) possibly_damaging(0.536) TCGA-FR-A3YO-06 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.12 tolerated(0.26) benign(0.085) TCGA-FR-A3YO-06 7 150417170 150417170 C T GIMAP1 Silent p.S26S 0.08 TCGA-FR-A3YO-06 7 150939005 150939005 G A SMARCD3 Silent p.D245D 0.62 TCGA-FR-A3YO-06 7 1517262 1517262 C T INTS1 Nonsense_Mutation p.W1621* 0.21 TCGA-FR-A3YO-06 7 155093273 155093273 C G INSIG1 Intron 0.10 TCGA-FR-A3YO-06 7 155255165 155255165 A T EN2 Missense_Mutation p.E262V 0.09 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 7 18688115 18688115 C T HDAC9 Missense_Mutation p.P426S 0.28 tolerated(0.33) probably_damaging(0.999) TCGA-FR-A3YO-06 7 18806753 18806753 C T HDAC9 Missense_Mutation p.S730F 0.20 deleterious(0) possibly_damaging(0.592) TCGA-FR-A3YO-06 7 19184565 19184565 C T FERD3L Missense_Mutation p.E141K 0.08 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 7 25266532 25266532 G A NPVF Silent p.S84S 0.11 TCGA-FR-A3YO-06 7 31377986 31377986 G A NEUROD6 Silent p.P299P 0.14 TCGA-FR-A3YO-06 7 31692215 31692215 G A CCDC129 Silent p.Q995Q 0.27 TCGA-FR-A3YO-06 7 34698054 34698054 C T NPSR1 Silent p.F10F 0.18 TCGA-FR-A3YO-06 7 36895174 36895174 G A ELMO1 Silent p.F722F 0.26 TCGA-FR-A3YO-06 7 37907434 37907434 G A NME8 Missense_Mutation p.R251Q 0.12 tolerated(0.62) benign(0.001) TCGA-FR-A3YO-06 7 41739621 41739621 C T INHBA Missense_Mutation p.E118K 0.27 deleterious(0.03) possibly_damaging(0.62) TCGA-FR-A3YO-06 7 43591931 43591931 G A HECW1 Silent p.R1502R 0.06 TCGA-FR-A3YO-06 7 44040575 44040575 G A SPDYE1 5'UTR 0.31 TCGA-FR-A3YO-06 7 44042346 44042346 G A SPDYE1 Silent p.K139K 0.05 TCGA-FR-A3YO-06 7 47840434 47840434 C T PKD1L1 Missense_Mutation p.R2669Q 0.19 tolerated(0.42) possibly_damaging(0.559) TCGA-FR-A3YO-06 7 48312994 48312994 C T ABCA13 Missense_Mutation p.S1244L 0.17 benign(0.031) TCGA-FR-A3YO-06 7 62752448 62752448 G A ZNF733P RNA 0.14 TCGA-FR-A3YO-06 7 63726944 63726944 C T ZNF679 Silent p.L311L 0.32 TCGA-FR-A3YO-06 7 64452419 64452419 G A ERV3-1 Missense_Mutation p.S329L 0.16 tolerated(0.43) benign(0.001) TCGA-FR-A3YO-06 7 64452580 64452580 T A ERV3-1 Missense_Mutation p.L275F 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A3YO-06 7 6820506 6820506 C T RSPH10B2 Silent p.A532A 0.05 TCGA-FR-A3YO-06 7 71275406 71275406 C T CALN1 Silent p.T191T 0.09 TCGA-FR-A3YO-06 7 7273947 7273947 G A C1GALT1 5'UTR 0.24 TCGA-FR-A3YO-06 7 73008367 73008367 C T MLXIPL Intron 0.45 TCGA-FR-A3YO-06 7 75693664 75693664 C T MDH2 Missense_Mutation p.P214L 0.24 deleterious(0.01) possibly_damaging(0.545) TCGA-FR-A3YO-06 7 82545809 82545809 A G PCLO Silent p.R3831R 0.12 TCGA-FR-A3YO-06 7 82585327 82585327 T C PCLO Missense_Mutation p.T1648A 0.13 unknown(0) TCGA-FR-A3YO-06 7 86493595 86493595 C T GRM3 Intron 0.48 TCGA-FR-A3YO-06 7 8790844 8790844 C T NXPH1 Silent p.L87L 0.09 TCGA-FR-A3YO-06 7 87913500 87913500 C T STEAP4 Missense_Mutation p.D29N 0.33 deleterious(0.01) possibly_damaging(0.85) TCGA-FR-A3YO-06 7 89790379 89790379 C A STEAP1 Missense_Mutation p.N115K 0.09 deleterious(0) probably_damaging(0.997) TCGA-FR-A3YO-06 7 91502983 91502983 A G MTERF Silent p.T375T 0.58 TCGA-FR-A3YO-06 7 94881389 94881389 C T PPP1R9A Missense_Mutation p.T871I 0.10 tolerated(0.18) benign(0.139) TCGA-FR-A3YO-06 7 99055921 99055921 G A ATP5J2 3'UTR 0.17 TCGA-FR-A3YO-06 7 99313521 99313521 C T CYP3A7 Missense_Mutation p.G177E 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A3YO-06 7 99696946 99696946 G A MCM7 Silent p.V119V 0.13 TCGA-FR-A3YO-06 7 99758545 99758545 G A GAL3ST4 Missense_Mutation p.S156F 0.06 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 8 106815664 106815664 G A ZFPM2 Silent p.G1118G 0.29 TCGA-FR-A3YO-06 8 10782298 10782298 C T XKR6 Silent p.R269R 0.17 TCGA-FR-A3YO-06 8 110424511 110424511 G A PKHD1L1 Silent p.G701G 0.30 TCGA-FR-A3YO-06 8 110980706 110980706 G A KCNV1 Missense_Mutation p.P372S 0.25 tolerated(0.23) probably_damaging(0.999) TCGA-FR-A3YO-06 8 118147600 118147600 G A SLC30A8 Missense_Mutation p.D12N 0.33 tolerated(0.07) benign(0.015) TCGA-FR-A3YO-06 8 118817125 118817125 G A EXT1 Missense_Mutation p.H631Y 0.26 deleterious(0.03) probably_damaging(0.927) TCGA-FR-A3YO-06 8 132051985 132051985 G A ADCY8 Silent p.L199L 0.17 TCGA-FR-A3YO-06 8 133053841 133053841 C T OC90 Missense_Mutation p.R92Q 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 8 133764175 133764175 G A TMEM71 Missense_Mutation p.S57F 0.19 deleterious(0.03) benign(0.386) TCGA-FR-A3YO-06 8 133948005 133948005 G A TG Missense_Mutation p.R1646Q 0.14 tolerated(1) benign(0) TCGA-FR-A3YO-06 8 134107411 134107411 C T TG Missense_Mutation p.R2455C 0.13 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 8 139180256 139180256 C T FAM135B Silent p.R380R 0.16 TCGA-FR-A3YO-06 8 14095134 14095134 G A SGCZ Missense_Mutation p.H131Y 0.23 deleterious(0.02) benign(0.162) TCGA-FR-A3YO-06 8 144993787 144993787 G A PLEC Missense_Mutation p.P3538L 0.17 probably_damaging(1) TCGA-FR-A3YO-06 8 16962001 16962001 G A MICU3 Splice_Site p.X362_splice 0.23 TCGA-FR-A3YO-06 8 21985247 21985247 G A HR Silent p.H236H 0.25 TCGA-FR-A3YO-06 8 22102632 22102632 A G POLR3D 5'Flank 0.17 TCGA-FR-A3YO-06 8 26238693 26238693 A G BNIP3L 5'Flank 0.25 TCGA-FR-A3YO-06 8 26238694 26238694 T A BNIP3L 5'Flank 0.23 TCGA-FR-A3YO-06 8 30210501 30210501 C T TUBBP1 RNA 0.26 TCGA-FR-A3YO-06 8 30889509 30889509 C T PURG Missense_Mutation p.G264R 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-FR-A3YO-06 8 37611495 37611495 G A ERLIN2 Silent p.K294K 0.30 TCGA-FR-A3YO-06 8 41906287 41906287 G A KAT6A Missense_Mutation p.S70F 0.22 probably_damaging(0.998) TCGA-FR-A3YO-06 8 53077734 53077734 C T ST18 Missense_Mutation p.G419E 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 8 55538490 55538490 C T RP1 Missense_Mutation p.S683F 0.15 tolerated(0.12) benign(0.287) TCGA-FR-A3YO-06 8 57354081 57354081 C T PENK Missense_Mutation p.R185K 0.10 deleterious(0.02) possibly_damaging(0.786) TCGA-FR-A3YO-06 8 59764351 59764351 C T TOX Missense_Mutation p.R142Q 0.12 tolerated(0.63) benign(0) TCGA-FR-A3YO-06 8 63978596 63978596 G A TTPA Missense_Mutation p.S140F 0.10 tolerated(0.16) probably_damaging(0.996) TCGA-FR-A3YO-06 8 65509365 65509365 C T CYP7B1 Missense_Mutation p.R452Q 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 8 66989088 66989088 C T DNAJC5B Silent p.L105L 0.26 TCGA-FR-A3YO-06 8 6728134 6728134 C T DEFB1 3'UTR 0.13 TCGA-FR-A3YO-06 8 69688666 69688666 G A C8orf34 Silent p.L479L 0.14 TCGA-FR-A3YO-06 8 70585448 70585448 G A SLCO5A1 Missense_Mutation p.R735C 0.21 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 8 70978728 70978728 C T PRDM14 Missense_Mutation p.G309S 0.11 deleterious(0.01) probably_damaging(1) TCGA-FR-A3YO-06 8 73849381 73849381 G A KCNB2 Missense_Mutation p.M597I 0.13 tolerated_low_confidence(0.11) benign(0.042) TCGA-FR-A3YO-06 8 77616450 77616450 G A ZFHX4 Missense_Mutation p.E43K 0.19 benign(0.003) TCGA-FR-A3YO-06 8 85686829 85686829 G A RALYL Missense_Mutation p.G104E 0.21 deleterious(0.02) possibly_damaging(0.6) TCGA-FR-A3YO-06 8 86048139 86048139 C T LRRCC1 Missense_Mutation p.S757L 0.13 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 8 87241983 87241983 G A SLC7A13 Missense_Mutation p.S175F 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A3YO-06 8 89209516 89209516 C T MMP16 Missense_Mutation p.G51D 0.07 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 8 95680245 95680245 C T ESRP1 Missense_Mutation p.P334S 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 9 104075208 104075208 G A LPPR1 Silent p.S255S 0.13 TCGA-FR-A3YO-06 9 104449483 104449483 C T GRIN3A Splice_Site p.X234_splice 0.25 TCGA-FR-A3YO-06 9 107332054 107332054 G A OR13C8 Silent p.S202S 0.32 TCGA-FR-A3YO-06 9 107332146 107332146 G A OR13C8 Missense_Mutation p.G233E 0.15 deleterious(0.02) probably_damaging(1) TCGA-FR-A3YO-06 9 107360981 107360981 G A OR13C5 Silent p.S238S 0.15 TCGA-FR-A3YO-06 9 109773146 109773146 C T ZNF462 Silent p.H2452H 0.08 TCGA-FR-A3YO-06 9 114090353 114090353 C T OR2K2 Missense_Mutation p.D121N 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A3YO-06 9 115760000 115760000 G A ZNF883 RNA 0.09 TCGA-FR-A3YO-06 9 116116603 116116603 G A BSPRY Silent p.K95K 0.11 TCGA-FR-A3YO-06 9 121929400 121929400 G A BRINP1 Missense_Mutation p.L750F 0.33 deleterious(0.04) probably_damaging(0.969) TCGA-FR-A3YO-06 9 123768261 123768261 A T C5 Missense_Mutation p.V833D 0.32 deleterious(0) probably_damaging(0.982) TCGA-FR-A3YO-06 9 125281920 125281920 C T OR1J4 Silent p.S167S 0.24 TCGA-FR-A3YO-06 9 125391277 125391277 G A OR1B1 Missense_Mutation p.L180F 0.22 deleterious(0) possibly_damaging(0.767) TCGA-FR-A3YO-06 9 125563178 125563178 C T OR1K1 Silent p.V259V 0.15 TCGA-FR-A3YO-06 9 129458637 129458637 C T LMX1B Silent p.F376F 0.17 TCGA-FR-A3YO-06 9 130479066 130479066 T C PTRH1 5'UTR 0.38 TCGA-FR-A3YO-06 9 131247677 131247677 G A ODF2 Missense_Mutation p.E442K 0.21 deleterious(0.02) possibly_damaging(0.544) TCGA-FR-A3YO-06 9 131873244 131873244 G A PPP2R4 5'Flank 0.16 TCGA-FR-A3YO-06 9 133779602 133779602 C T FIBCD1 Missense_Mutation p.R412H 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-FR-A3YO-06 9 134165395 134165395 C T PPAPDC3 Missense_Mutation p.S4F 0.11 tolerated(0.05) benign(0.174) TCGA-FR-A3YO-06 9 134165396 134165396 C T PPAPDC3 Silent p.S4S 0.11 TCGA-FR-A3YO-06 9 134454675 134454675 C T RAPGEF1 3'UTR 0.25 TCGA-FR-A3YO-06 9 136290691 136290691 C T ADAMTS13 Missense_Mutation p.R125W 0.30 deleterious(0.02) benign(0.348) TCGA-FR-A3YO-06 9 137650103 137650103 C T COL5A1 Silent p.F632F 0.15 TCGA-FR-A3YO-06 9 137779204 137779204 G A FCN2 Silent p.S295S 0.26 TCGA-FR-A3YO-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 9 27524461 27524461 C A IFNK Missense_Mutation p.Q43K 0.20 tolerated(0.11) benign(0.038) TCGA-FR-A3YO-06 9 33799159 33799159 C T PRSS3 Missense_Mutation p.T299I 0.08 tolerated(0.08) possibly_damaging(0.841) TCGA-FR-A3YO-06 9 399220 399220 G A DOCK8 Silent p.R1065R 0.13 TCGA-FR-A3YO-06 9 75407149 75407149 G A TMC1 Missense_Mutation p.E483K 0.13 tolerated(0.46) benign(0.109) TCGA-FR-A3YO-06 9 78506102 78506102 G T PCSK5 Missense_Mutation p.G2V 0.38 deleterious_low_confidence(0) benign(0.058) TCGA-FR-A3YO-06 9 82333695 82333695 G A TLE4 Missense_Mutation p.D467N 0.14 deleterious(0.01) benign(0.044) TCGA-FR-A3YO-06 9 86617584 86617584 G A RMI1 Missense_Mutation p.M561I 0.06 deleterious(0.04) benign(0.26) TCGA-FR-A3YO-06 9 90500616 90500616 C T SPATA31E1 Missense_Mutation p.P405L 0.13 tolerated(0.21) benign(0.015) TCGA-FR-A3YO-06 9 95414916 95414916 G A IPPK Silent p.V77V 0.16 TCGA-FR-A3YO-06 X 10182060 10182060 C T CLCN4 Missense_Mutation p.S639F 0.09 deleterious(0) probably_damaging(0.99) TCGA-FR-A3YO-06 X 101969868 101969868 C T GPRASP2 Missense_Mutation p.A24V 0.12 tolerated(0.14) benign(0) TCGA-FR-A3YO-06 X 102335094 102335094 C T NXF3 Silent p.K326K 0.35 TCGA-FR-A3YO-06 X 103431143 103431143 G A FAM199X Silent p.V190V 0.17 TCGA-FR-A3YO-06 X 105153631 105153631 G A NRK Missense_Mutation p.M667I 0.14 deleterious(0.01) benign(0.077) TCGA-FR-A3YO-06 X 106803608 106803608 C T FRMPD3 Missense_Mutation p.S328L 0.21 deleterious(0) possibly_damaging(0.831) TCGA-FR-A3YO-06 X 107147220 107147220 G A MID2 Missense_Mutation p.M283I 0.16 tolerated(0.23) benign(0.009) TCGA-FR-A3YO-06 X 107224236 107224236 C T TEX13B 3'UTR 0.16 TCGA-FR-A3YO-06 X 108718808 108718808 C T GUCY2F Missense_Mutation p.A120T 0.16 tolerated(0.05) probably_damaging(0.997) TCGA-FR-A3YO-06 X 110497534 110497534 G A CAPN6 Missense_Mutation p.S88F 0.28 deleterious(0) probably_damaging(0.951) TCGA-FR-A3YO-06 X 110970087 110970087 C T ALG13 Nonsense_Mutation p.R594* 0.15 TCGA-FR-A3YO-06 X 11135392 11135392 A G HCCS Silent p.P86P 0.27 TCGA-FR-A3YO-06 X 114248386 114248386 G A IL13RA2 Missense_Mutation p.S156F 0.18 deleterious(0.04) benign(0.123) TCGA-FR-A3YO-06 X 114357450 114357450 G A LRCH2 Missense_Mutation p.S658F 0.12 tolerated(0.49) probably_damaging(0.922) TCGA-FR-A3YO-06 X 117959787 117959787 G A ZCCHC12 Missense_Mutation p.D194N 0.10 tolerated(0.45) benign(0.001) TCGA-FR-A3YO-06 X 118215319 118215319 C T KIAA1210 Nonsense_Mutation p.W1701* 0.13 TCGA-FR-A3YO-06 X 120181966 120181966 G A GLUD2 Missense_Mutation p.R143H 0.18 deleterious(0.01) benign(0.132) TCGA-FR-A3YO-06 X 122756609 122756609 C T THOC2 Missense_Mutation p.S1262N 0.17 tolerated(0.14) benign(0.025) TCGA-FR-A3YO-06 X 123556195 123556195 C T TENM1 Silent p.G1466G 0.14 TCGA-FR-A3YO-06 X 123787498 123787498 G A TENM1 Missense_Mutation p.S435F 0.29 deleterious(0) possibly_damaging(0.866) TCGA-FR-A3YO-06 X 130410923 130410923 G A IGSF1 Silent p.L871L 0.24 TCGA-FR-A3YO-06 X 131203653 131203653 G A MST4 Missense_Mutation p.E249K 0.18 deleterious(0) possibly_damaging(0.76) TCGA-FR-A3YO-06 X 132445318 132445318 C T GPC4 Missense_Mutation p.G282E 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A3YO-06 X 133948838 133948838 A T FAM122C Missense_Mutation p.I50F 0.08 tolerated(0.1) benign(0.016) TCGA-FR-A3YO-06 X 133948839 133948839 T A FAM122C Missense_Mutation p.I50N 0.08 deleterious(0.04) benign(0.07) TCGA-FR-A3YO-06 X 135047232 135047232 G A MMGT1 Missense_Mutation p.S116F 0.13 tolerated_low_confidence(0.08) benign(0.002) TCGA-FR-A3YO-06 X 135431595 135431595 G A GPR112 Silent p.E1910E 0.15 TCGA-FR-A3YO-06 X 135469994 135469994 G A GPR112 Silent p.T2624T 0.28 TCGA-FR-A3YO-06 X 135638733 135638733 G A VGLL1 3'UTR 0.30 TCGA-FR-A3YO-06 X 138698587 138698587 C T MCF2 Missense_Mutation p.E409K 0.14 tolerated(0.11) benign(0.271) TCGA-FR-A3YO-06 X 140994619 140994619 C T MAGEC1 Missense_Mutation p.P477S 0.12 tolerated_low_confidence(0.08) possibly_damaging(0.641) TCGA-FR-A3YO-06 X 140995253 140995253 C T MAGEC1 Missense_Mutation p.S688F 0.33 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FR-A3YO-06 X 1475206 1475206 C T IL3RA Missense_Mutation p.R237C 0.17 tolerated(0.06) possibly_damaging(0.505) TCGA-FR-A3YO-06 X 147744025 147744025 A G AFF2 Silent p.L259L 0.12 TCGA-FR-A3YO-06 X 150840152 150840152 C T PASD1 Silent p.L446L 0.35 TCGA-FR-A3YO-06 X 151869643 151869643 G A MAGEA6 Silent p.R111R 0.13 TCGA-FR-A3YO-06 X 152482447 152482447 G A MAGEA1 Silent p.I188I 0.27 TCGA-FR-A3YO-06 X 152815720 152815720 G A ATP2B3 Missense_Mutation p.G600E 0.37 deleterious(0) probably_damaging(0.981) TCGA-FR-A3YO-06 X 153039545 153039545 G A PLXNB3 Missense_Mutation p.D1194N 0.14 tolerated(0.41) possibly_damaging(0.71) TCGA-FR-A3YO-06 X 153657425 153657425 G A ATP6AP1 Missense_Mutation p.E65K 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-FR-A3YO-06 X 15646186 15646186 C T TMEM27 Missense_Mutation p.E193K 0.29 tolerated(0.09) possibly_damaging(0.623) TCGA-FR-A3YO-06 X 17744403 17744403 T C NHS Missense_Mutation p.L705P 0.08 tolerated(0.37) probably_damaging(1) TCGA-FR-A3YO-06 X 18264850 18264850 G A SCML2 Missense_Mutation p.P557S 0.31 tolerated(0.09) benign(0.058) TCGA-FR-A3YO-06 X 23722059 23722059 G A ACOT9 Silent p.S433S 0.26 TCGA-FR-A3YO-06 X 24024370 24024370 G A KLHL15 Silent p.I147I 0.11 TCGA-FR-A3YO-06 X 2999054 2999054 G T ARSF Missense_Mutation p.G136C 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 X 3228897 3228897 G A MXRA5 Silent p.I2449I 0.15 TCGA-FR-A3YO-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.19 deleterious(0.02) benign(0.166) TCGA-FR-A3YO-06 X 3235891 3235891 G A MXRA5 Missense_Mutation p.S1944L 0.17 tolerated(0.13) benign(0.105) TCGA-FR-A3YO-06 X 3241208 3241208 C T MXRA5 Missense_Mutation p.E840K 0.30 deleterious(0.01) possibly_damaging(0.655) TCGA-FR-A3YO-06 X 36103547 36103547 G A CHDC2 Missense_Mutation p.G178E 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 X 37028887 37028887 G A FAM47C Missense_Mutation p.E802K 0.25 deleterious(0.05) benign(0.237) TCGA-FR-A3YO-06 X 43655067 43655067 C T MAOB Silent p.V229V 0.34 TCGA-FR-A3YO-06 X 43817930 43817930 G A NDP 5'UTR 0.29 TCGA-FR-A3YO-06 X 47306864 47306864 G C ZNF41 Missense_Mutation p.H769D 0.32 deleterious(0) probably_damaging(0.995) TCGA-FR-A3YO-06 X 47426737 47426737 C T ARAF Missense_Mutation p.R328W 0.11 deleterious(0.03) probably_damaging(0.956) TCGA-FR-A3YO-06 X 48206994 48206994 C T SSX3 Missense_Mutation p.R171K 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-FR-A3YO-06 X 48649519 48649519 G A GATA1 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.01) benign(0.38) TCGA-FR-A3YO-06 X 49958140 49958140 C T AKAP4 Silent p.K408K 0.11 TCGA-FR-A3YO-06 X 50381220 50381220 G A SHROOM4 Missense_Mutation p.P120S 0.38 tolerated(0.19) possibly_damaging(0.778) TCGA-FR-A3YO-06 X 51486939 51486939 C T GSPT2 Silent p.L73L 0.14 TCGA-FR-A3YO-06 X 51487113 51487113 G A GSPT2 Missense_Mutation p.E131K 0.15 tolerated(0.13) benign(0.15) TCGA-FR-A3YO-06 X 53455434 53455434 G A RIBC1 Missense_Mutation p.G135S 0.16 deleterious(0.01) probably_damaging(0.95) TCGA-FR-A3YO-06 X 53581619 53581619 C T HUWE1 Missense_Mutation p.M2823I 0.15 benign(0) TCGA-FR-A3YO-06 X 54337720 54337720 C T WNK3 Missense_Mutation p.R181Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 X 55035750 55035750 C T ALAS2 Missense_Mutation p.V543M 0.35 tolerated(0.06) benign(0.146) TCGA-FR-A3YO-06 X 57337129 57337129 C T FAAH2 Missense_Mutation p.P127S 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A3YO-06 X 57936631 57936631 G A ZXDA Missense_Mutation p.A75V 0.13 tolerated_low_confidence(0.08) benign(0.008) TCGA-FR-A3YO-06 X 69424276 69424276 C T DGAT2L6 Silent p.L257L 0.08 TCGA-FR-A3YO-06 X 70329108 70329108 G A IL2RG Missense_Mutation p.P243S 0.13 deleterious(0.04) possibly_damaging(0.554) TCGA-FR-A3YO-06 X 70387354 70387354 C T NLGN3 Silent p.T469T 0.27 TCGA-FR-A3YO-06 X 70823866 70823866 G A ACRC Missense_Mutation p.D247N 0.15 unknown(0) TCGA-FR-A3YO-06 X 72434032 72434032 G A NAP1L2 Silent p.D99D 0.32 TCGA-FR-A3YO-06 X 72434184 72434184 C T NAP1L2 Missense_Mutation p.E49K 0.27 deleterious_low_confidence(0.01) benign(0.197) TCGA-FR-A3YO-06 X 72667173 72667173 G A CDX4 Silent p.G28G 0.16 TCGA-FR-A3YO-06 X 73042039 73042039 C T XIST RNA 0.30 TCGA-FR-A3YO-06 X 74282185 74282185 G A ABCB7 Missense_Mutation p.S639L 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A3YO-06 X 79286268 79286268 G A TBX22 Missense_Mutation p.M407I 0.31 tolerated(0.14) benign(0.011) TCGA-FR-A3YO-06 X 79932388 79932388 C T BRWD3 Missense_Mutation p.G1710E 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-FR-A3YO-06 X 79978253 79978253 G A BRWD3 Missense_Mutation p.R562C 0.16 deleterious(0) probably_damaging(0.943) TCGA-FR-A3YO-06 X 86772762 86772762 G A KLHL4 5'Flank 0.18 TCGA-FR-A3YO-06 X 90691348 90691348 G C PABPC5 Missense_Mutation p.D258H 0.17 tolerated(0.07) possibly_damaging(0.889) TCGA-FR-A3YO-06 X 91642777 91642777 A T PCDH11X Missense_Mutation p.E1063V 0.11 deleterious(0) probably_damaging(0.999) TCGA-FR-A3YO-06 X 99901387 99901387 C T SRPX2 Missense_Mutation p.P23L 0.14 tolerated(0.8) benign(0.01) TCGA-FR-A44A-06 10 100219419 100219419 C T HPSE2 Missense_Mutation p.R564Q 0.29 tolerated(0.1) probably_damaging(0.99) TCGA-FR-A44A-06 10 105184743 105184743 G A PDCD11 Silent p.L922L 0.31 TCGA-FR-A44A-06 10 11505373 11505373 G A USP6NL Silent p.T535T 0.24 TCGA-FR-A44A-06 10 24727368 24727368 C T KIAA1217 Missense_Mutation p.A269V 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-FR-A44A-06 10 24762811 24762811 C T KIAA1217 Missense_Mutation p.P501S 0.10 tolerated(0.1) benign(0.121) TCGA-FR-A44A-06 10 5260828 5260828 C T AKR1C4 3'UTR 0.14 TCGA-FR-A44A-06 10 5567295 5567295 G T CALML3 Nonsense_Mutation p.E83* 0.10 TCGA-FR-A44A-06 10 61815418 61815418 T C ANK3 Missense_Mutation p.K4355E 0.26 probably_damaging(0.952) TCGA-FR-A44A-06 10 61819472 61819472 C A ANK3 Intron 0.16 TCGA-FR-A44A-06 10 61819473 61819473 A C ANK3 Intron 0.17 TCGA-FR-A44A-06 10 72536920 72536920 G A TBATA Nonsense_Mutation p.Q227* 0.26 TCGA-FR-A44A-06 11 123597629 123597629 A C ZNF202 Silent p.P341P 0.18 TCGA-FR-A44A-06 11 124180606 124180606 C T OR8D1 Silent p.Q19Q 0.15 TCGA-FR-A44A-06 11 124756949 124756949 C - ROBO4 Frame_Shift_Del p.E787Rfs*7 0.08 TCGA-FR-A44A-06 11 126314917 126314917 G A KIRREL3 Silent p.P403P 0.15 TCGA-FR-A44A-06 11 134018460 134018460 G A JAM3 Missense_Mutation p.G244E 0.09 deleterious(0) probably_damaging(0.998) TCGA-FR-A44A-06 11 17483187 17483187 G A ABCC8 Silent p.I255I 0.11 TCGA-FR-A44A-06 11 284542 284542 C T NLRP6 Silent p.L814L 0.13 TCGA-FR-A44A-06 11 32410669 32410669 C T WT1 Missense_Mutation p.D497N 0.30 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FR-A44A-06 11 4703151 4703151 C T OR51E2 Missense_Mutation p.G264E 0.18 deleterious(0.01) probably_damaging(1) TCGA-FR-A44A-06 11 4903909 4903909 C T OR51T1 Silent p.L287L 0.18 TCGA-FR-A44A-06 11 4968047 4968047 G A OR51A4 Missense_Mutation p.S95L 0.10 deleterious(0.02) possibly_damaging(0.904) TCGA-FR-A44A-06 11 55322235 55322235 G A OR4C15 Missense_Mutation p.M151I 0.19 tolerated_low_confidence(0.07) benign(0.292) TCGA-FR-A44A-06 11 5565995 5565995 G A OR52H1 Silent p.V253V 0.22 TCGA-FR-A44A-06 11 55703609 55703609 C T OR5I1 Missense_Mutation p.E90K 0.17 tolerated(0.3) benign(0.001) TCGA-FR-A44A-06 11 55703610 55703610 C T OR5I1 Silent p.S89S 0.18 TCGA-FR-A44A-06 11 57886005 57886005 G A OR9I1 Silent p.V304V 0.10 TCGA-FR-A44A-06 11 5842094 5842094 C T OR52N2 Missense_Mutation p.P177S 0.21 tolerated(0.14) benign(0.007) TCGA-FR-A44A-06 11 58602170 58602170 C T GLYATL2 Missense_Mutation p.G206D 0.15 tolerated(0.14) probably_damaging(0.947) TCGA-FR-A44A-06 11 62287467 62287467 C T AHNAK Missense_Mutation p.D4808N 0.22 possibly_damaging(0.867) TCGA-FR-A44A-06 11 64037538 64037538 G A BAD 3'UTR 0.29 TCGA-FR-A44A-06 11 64037539 64037539 G A BAD 3'UTR 0.29 TCGA-FR-A44A-06 11 64453288 64453288 G A NRXN2 Silent p.L328L 0.10 TCGA-FR-A44A-06 11 69588128 69588128 C T FGF4 Silent p.G190G 0.13 TCGA-FR-A44A-06 11 7081237 7081237 G A NLRP14 Missense_Mutation p.G916R 0.17 deleterious(0) probably_damaging(0.991) TCGA-FR-A44A-06 11 73022653 73022653 C T ARHGEF17 Silent p.F990F 0.17 TCGA-FR-A44A-06 11 7846673 7846673 G A OR5P3 Missense_Mutation p.P283S 0.15 deleterious(0.01) possibly_damaging(0.77) TCGA-FR-A44A-06 11 7950066 7950066 G A OR10A6 Silent p.I48I 0.17 TCGA-FR-A44A-06 11 85411561 85411561 G A SYTL2 Missense_Mutation p.P1122S 0.09 tolerated(0.23) benign(0.141) TCGA-FR-A44A-06 11 89133427 89133427 C T NOX4 Missense_Mutation p.E323K 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 11 9310020 9310020 G A TMEM41B Missense_Mutation p.P144L 0.12 deleterious(0) probably_damaging(0.992) TCGA-FR-A44A-06 12 100774643 100774643 C T SLC17A8 Missense_Mutation p.S89F 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 12 113698247 113698247 C T TPCN1 Missense_Mutation p.P135S 0.08 tolerated(0.61) benign(0.009) TCGA-FR-A44A-06 12 119968748 119968748 G A CCDC60 Silent p.V477V 0.14 TCGA-FR-A44A-06 12 122217526 122217526 C T RHOF Missense_Mutation p.E172K 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 12 124114956 124114956 G A EIF2B1 Silent p.S80S 0.12 TCGA-FR-A44A-06 12 130926570 130926570 C T RIMBP2 Missense_Mutation p.E426K 0.12 tolerated(0.07) possibly_damaging(0.664) TCGA-FR-A44A-06 12 18552663 18552663 C T PIK3C2G Missense_Mutation p.P692S 0.23 deleterious(0) benign(0.279) TCGA-FR-A44A-06 12 21028264 21028264 C T SLCO1B3 Missense_Mutation p.P275S 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 12 21032466 21032466 C A SLCO1B3 Nonsense_Mutation p.S411* 0.09 TCGA-FR-A44A-06 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 12 2613673 2613673 C T CACNA1C Intron 0.07 TCGA-FR-A44A-06 12 2774072 2774072 C A CACNA1C Missense_Mutation p.S1486R 0.14 tolerated(0.26) benign(0.001) TCGA-FR-A44A-06 12 3647828 3647828 G A PRMT8 Intron 0.12 TCGA-FR-A44A-06 12 43826508 43826508 G A ADAMTS20 Nonsense_Mutation p.Q943* 0.13 TCGA-FR-A44A-06 12 49935540 49935540 G A KCNH3 Silent p.K146K 0.07 TCGA-FR-A44A-06 12 52779082 52779082 C T KRT84 Silent p.G96G 0.22 TCGA-FR-A44A-06 12 6886971 6886971 G A LAG3 Missense_Mutation p.G439R 0.26 tolerated(0.12) possibly_damaging(0.87) TCGA-FR-A44A-06 12 939188 939188 C T WNK1 Silent p.A391A 0.21 TCGA-FR-A44A-06 12 9751129 9751129 G A KLRB1 Missense_Mutation p.S127F 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 13 103701677 103701677 C T SLC10A2 Missense_Mutation p.S294N 0.20 deleterious(0.03) benign(0.365) TCGA-FR-A44A-06 13 25744447 25744447 C T AMER2 Silent p.Q437Q 0.20 TCGA-FR-A44A-06 13 30077263 30077263 C G MTUS2 Missense_Mutation p.L1354V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A44A-06 13 32914708 32914708 C T BRCA2 Silent p.S2072S 0.23 TCGA-FR-A44A-06 13 86369151 86369151 G A SLITRK6 Missense_Mutation p.P498L 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 13 92003070 92003070 C T MIR17HG RNA 0.16 TCGA-FR-A44A-06 14 105615338 105615338 G A JAG2 Silent p.S614S 0.27 TCGA-FR-A44A-06 14 20691988 20691988 G A OR11H6 Silent p.E40E 0.31 TCGA-FR-A44A-06 14 21360080 21360080 G C RNASE3 Missense_Mutation p.V79L 0.24 deleterious(0.04) benign(0.331) TCGA-FR-A44A-06 14 22740184 22740184 G A TRAV38-1 Missense_Mutation p.E30K 0.67 tolerated(0.87) benign(0.076) TCGA-FR-A44A-06 14 31354795 31354795 G A COCH Missense_Mutation p.G310E 0.33 tolerated(0.71) possibly_damaging(0.856) TCGA-FR-A44A-06 14 69371372 69371372 C T ACTN1 Missense_Mutation p.D226N 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 14 74970713 74970713 C T LTBP2 Missense_Mutation p.G1500S 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 14 75323588 75323588 T C PROX2 Silent p.T281T 0.27 TCGA-FR-A44A-06 14 81610752 81610752 G A TSHR 3'UTR 0.34 TCGA-FR-A44A-06 14 92058241 92058241 C T CATSPERB Missense_Mutation p.E939K 0.31 tolerated(0.06) probably_damaging(0.996) TCGA-FR-A44A-06 14 92058242 92058242 C T CATSPERB Silent p.R938R 0.31 TCGA-FR-A44A-06 15 101718014 101718014 T C CHSY1 Missense_Mutation p.Y663C 0.08 deleterious(0) probably_damaging(0.998) TCGA-FR-A44A-06 15 22332666 22332666 C T RP11-69H14.6 RNA 0.09 TCGA-FR-A44A-06 15 23444016 23444016 G A AC100757.1 5'Flank 0.13 TCGA-FR-A44A-06 15 29346355 29346355 C T APBA2 Missense_Mutation p.L90F 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A44A-06 15 31822993 31822993 G T OTUD7A Missense_Mutation p.S190Y 0.15 tolerated(0.62) probably_damaging(0.996) TCGA-FR-A44A-06 15 33358849 33358849 G A FMN1 Missense_Mutation p.P413S 0.16 deleterious(0) unknown(0) TCGA-FR-A44A-06 15 39875853 39875853 C T THBS1 Silent p.T221T 0.15 TCGA-FR-A44A-06 15 39910004 39910004 C T FSIP1 Missense_Mutation p.G544D 0.38 tolerated(0.58) benign(0.018) TCGA-FR-A44A-06 15 40328689 40328689 G A SRP14 Missense_Mutation p.L86F 0.18 tolerated(0.09) probably_damaging(0.995) TCGA-FR-A44A-06 15 40568177 40568177 C T PAK6 Missense_Mutation p.P643L 0.31 deleterious(0) probably_damaging(0.954) TCGA-FR-A44A-06 15 42375498 42375498 C T PLA2G4D Silent p.K190K 0.37 TCGA-FR-A44A-06 15 54306899 54306899 G A UNC13C Missense_Mutation p.S600N 0.16 deleterious_low_confidence(0.01) benign(0.001) TCGA-FR-A44A-06 15 64455229 64455229 G A PPIB 5'UTR 0.48 TCGA-FR-A44A-06 15 73009120 73009120 T A BBS4 Missense_Mutation p.F112I 0.15 deleterious(0.03) benign(0.108) TCGA-FR-A44A-06 15 73009121 73009121 T G BBS4 Missense_Mutation p.F112C 0.15 deleterious(0) probably_damaging(0.949) TCGA-FR-A44A-06 15 74476273 74476273 C T STRA6 Silent p.R447R 0.34 TCGA-FR-A44A-06 15 75682143 75682143 A T SIN3A Missense_Mutation p.D957E 0.30 tolerated(0.89) benign(0.084) TCGA-FR-A44A-06 15 75982082 75982082 C T CSPG4 Missense_Mutation p.G442R 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 15 77451003 77451003 G A PEAK1 Missense_Mutation p.P1058L 0.35 deleterious(0.05) benign(0.002) TCGA-FR-A44A-06 15 77451004 77451004 G A PEAK1 Missense_Mutation p.P1058S 0.36 tolerated(0.09) benign(0.007) TCGA-FR-A44A-06 15 78894422 78894422 C T CHRNA3 Missense_Mutation p.D188N 0.20 deleterious(0.03) benign(0.127) TCGA-FR-A44A-06 16 10989528 10989528 C T CIITA Missense_Mutation p.P68S 0.16 tolerated(0.09) benign(0.019) TCGA-FR-A44A-06 16 12061516 12061516 G A TNFRSF17 Missense_Mutation p.V123M 0.10 deleterious(0) probably_damaging(0.964) TCGA-FR-A44A-06 16 21011647 21011647 G A DNAH3 Missense_Mutation p.T2107I 0.19 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 16 24192196 24192196 G A PRKCB Missense_Mutation p.D494N 0.13 tolerated(0.43) benign(0.007) TCGA-FR-A44A-06 16 29853396 29853396 G A MVP Missense_Mutation p.D533N 0.16 deleterious(0) possibly_damaging(0.85) TCGA-FR-A44A-06 16 30002411 30002411 G A TAOK2 3'Flank 0.14 TCGA-FR-A44A-06 16 3274588 3274588 A C ZNF200 Silent p.G164G 0.20 TCGA-FR-A44A-06 16 5145507 5145507 T G FAM86A Missense_Mutation p.E35D 0.26 tolerated(0.12) benign(0.024) TCGA-FR-A44A-06 16 56904075 56904075 C T SLC12A3 Silent p.F223F 0.12 TCGA-FR-A44A-06 16 615210 615210 T C C16orf11 Missense_Mutation p.I540T 0.32 tolerated(0.17) benign(0.018) TCGA-FR-A44A-06 16 67316403 67316403 C T PLEKHG4 Intron 0.26 TCGA-FR-A44A-06 16 69988426 69988426 C T CLEC18A Missense_Mutation p.H136Y 0.18 tolerated(1) benign(0.006) TCGA-FR-A44A-06 16 70866862 70866862 G A HYDIN Silent p.T4596T 0.14 TCGA-FR-A44A-06 16 70866863 70866863 G A HYDIN Missense_Mutation p.T4596I 0.14 probably_damaging(0.934) TCGA-FR-A44A-06 16 70913277 70913277 G A HYDIN Missense_Mutation p.L3494F 0.09 probably_damaging(0.934) TCGA-FR-A44A-06 16 77325265 77325265 C T ADAMTS18 Silent p.K1100K 0.12 TCGA-FR-A44A-06 16 84486818 84486818 G A ATP2C2 Missense_Mutation p.E636K 0.18 tolerated(0.07) benign(0.009) TCGA-FR-A44A-06 16 89293649 89293649 C T ZNF778 Missense_Mutation p.S290F 0.19 tolerated(1) benign(0.007) TCGA-FR-A44A-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.15 tolerated(0.37) benign(0.005) TCGA-FR-A44A-06 17 10400685 10400685 C T MYH1 Missense_Mutation p.E1484K 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A44A-06 17 11608448 11608448 C G DNAH9 Missense_Mutation p.S1833C 0.24 benign(0.072) TCGA-FR-A44A-06 17 11645520 11645520 G A DNAH9 Missense_Mutation p.E2001K 0.27 benign(0.223) TCGA-FR-A44A-06 17 11797724 11797724 G A DNAH9 Missense_Mutation p.E3773K 0.43 benign(0.064) TCGA-FR-A44A-06 17 13399780 13399780 G A HS3ST3A1 Missense_Mutation p.P319S 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 17 1538475 1538475 C T SCARF1 Silent p.T690T 0.35 TCGA-FR-A44A-06 17 2202766 2202766 G A SMG6 Silent p.S427S 0.25 TCGA-FR-A44A-06 17 26857820 26857820 G A FOXN1 Missense_Mutation p.S295N 0.09 deleterious(0.01) possibly_damaging(0.876) TCGA-FR-A44A-06 17 27420013 27420013 G C MYO18A Missense_Mutation p.R1645G 0.14 tolerated(0.12) benign(0.001) TCGA-FR-A44A-06 17 34072331 34072331 C T GAS2L2 Missense_Mutation p.A729T 0.11 tolerated(0.22) benign(0.01) TCGA-FR-A44A-06 17 34072332 34072332 C T GAS2L2 Silent p.S728S 0.10 TCGA-FR-A44A-06 17 37381674 37381674 C T STAC2 Missense_Mutation p.E28K 0.18 tolerated(0.06) possibly_damaging(0.462) TCGA-FR-A44A-06 17 41836103 41836103 G A SOST Missense_Mutation p.L3F 0.21 tolerated(0.09) possibly_damaging(0.849) TCGA-FR-A44A-06 17 41926210 41926210 G A CD300LG Missense_Mutation p.E110K 0.13 tolerated(0.84) benign(0.01) TCGA-FR-A44A-06 17 42429873 42429873 C T GRN Silent p.F526F 0.10 TCGA-FR-A44A-06 17 46671091 46671091 C T HOXB5 5'UTR 0.25 TCGA-FR-A44A-06 17 48918392 48918392 C T WFIKKN2 3'UTR 0.22 TCGA-FR-A44A-06 17 57057492 57057492 G A PPM1E Silent p.E456E 0.15 TCGA-FR-A44A-06 17 61574223 61574223 C T ACE Missense_Mutation p.P1190S 0.15 tolerated(0.72) benign(0.026) TCGA-FR-A44A-06 17 71193193 71193193 C G COG1 Missense_Mutation p.Q239E 0.08 deleterious(0.01) benign(0.268) TCGA-FR-A44A-06 17 71420166 71420166 C T SDK2 Missense_Mutation p.R550K 0.21 tolerated(1) benign(0.002) TCGA-FR-A44A-06 17 72436958 72436958 C T GPRC5C Missense_Mutation p.P393L 0.21 deleterious(0.01) benign(0.141) TCGA-FR-A44A-06 17 79968740 79968740 G A ASPSCR1 Silent p.E411E 0.20 TCGA-FR-A44A-06 17 8732306 8732306 C T PIK3R6 Nonsense_Mutation p.W297* 0.29 TCGA-FR-A44A-06 18 28908236 28908236 G A DSG1 Missense_Mutation p.V101I 0.14 tolerated(0.59) benign(0.006) TCGA-FR-A44A-06 18 29122786 29122786 G A DSG2 Missense_Mutation p.E769K 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-FR-A44A-06 18 3742509 3742509 G A DLGAP1 Silent p.I392I 0.18 TCGA-FR-A44A-06 18 57106806 57106806 G A CCBE1 Missense_Mutation p.P307L 0.21 tolerated(0.07) probably_damaging(0.986) TCGA-FR-A44A-06 18 61562601 61562601 C T SERPINB2 Missense_Mutation p.P91L 0.23 deleterious(0.04) probably_damaging(0.968) TCGA-FR-A44A-06 19 10574552 10574552 C T PDE4A Silent p.I609I 0.36 TCGA-FR-A44A-06 19 18779932 18779932 G A KLHL26 Silent p.T575T 0.24 TCGA-FR-A44A-06 19 18779933 18779933 G A KLHL26 Missense_Mutation p.G576S 0.24 tolerated(0.69) benign(0.067) TCGA-FR-A44A-06 19 19757947 19757947 G A ATP13A1 Silent p.S1032S 0.19 TCGA-FR-A44A-06 19 40376764 40376765 - A FCGBP Frame_Shift_Ins p.L3886Ffs*7 0.08 TCGA-FR-A44A-06 19 40408387 40408388 - A FCGBP Frame_Shift_Ins p.L1484Ffs*7 0.13 TCGA-FR-A44A-06 19 41704744 41704744 C T CYP2S1 Missense_Mutation p.S262L 0.25 deleterious(0) possibly_damaging(0.718) TCGA-FR-A44A-06 19 41712359 41712359 C T CYP2S1 Missense_Mutation p.P494L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 19 4171690 4171690 C T CREB3L3 Silent p.R370R 0.17 TCGA-FR-A44A-06 19 55341764 55341764 G A KIR3DL1 3'UTR 0.32 TCGA-FR-A44A-06 19 59010594 59010594 G A SLC27A5 Intron 0.29 TCGA-FR-A44A-06 19 806426 806426 T G PTBP1 Missense_Mutation p.V330G 0.28 tolerated(0.14) benign(0.006) TCGA-FR-A44A-06 19 9046600 9046600 C T MUC16 Silent p.R11677R 0.22 TCGA-FR-A44A-06 1 114354871 114354871 G A RSBN1 Missense_Mutation p.A55V 0.12 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-FR-A44A-06 1 116931559 116931559 C T ATP1A1 Silent p.P224P 0.24 TCGA-FR-A44A-06 1 12952912 12952912 G C PRAMEF10 Missense_Mutation p.D420E 0.16 tolerated(0.06) benign(0.124) TCGA-FR-A44A-06 1 154918697 154918697 G A PBXIP1 Missense_Mutation p.R485W 0.17 tolerated(0.15) benign(0.011) TCGA-FR-A44A-06 1 154918698 154918698 G A PBXIP1 Silent p.D484D 0.17 TCGA-FR-A44A-06 1 155254496 155254496 C T HCN3 Missense_Mutation p.A346V 0.22 deleterious(0.03) benign(0.349) TCGA-FR-A44A-06 1 158736427 158736427 C T OR6N1 Missense_Mutation p.G16S 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A44A-06 1 16261540 16261540 G T SPEN Silent p.G2935G 0.22 TCGA-FR-A44A-06 1 170955810 170955810 C T MROH9 Silent p.L280L 0.24 TCGA-FR-A44A-06 1 171605571 171605571 G A MYOC Nonsense_Mutation p.Q337* 0.13 TCGA-FR-A44A-06 1 171605572 171605572 G A MYOC Silent p.F336F 0.12 TCGA-FR-A44A-06 1 172011255 172011255 C T DNM3 Missense_Mutation p.H367Y 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-FR-A44A-06 1 17657608 17657608 G A PADI4 Silent p.T79T 0.19 TCGA-FR-A44A-06 1 176992576 176992576 G A ASTN1 Silent p.L468L 0.31 TCGA-FR-A44A-06 1 190067669 190067669 G A BRINP3 Missense_Mutation p.P594S 0.19 deleterious(0.02) benign(0.091) TCGA-FR-A44A-06 1 190130016 190130016 T C BRINP3 Silent p.E322E 0.12 TCGA-FR-A44A-06 1 197396828 197396828 A T CRB1 Silent p.G791G 0.21 TCGA-FR-A44A-06 1 202571164 202571164 C T SYT2 Missense_Mutation p.G219S 0.13 tolerated(0.23) probably_damaging(1) TCGA-FR-A44A-06 1 205497011 205497011 C T CDK18 Silent p.I303I 0.24 TCGA-FR-A44A-06 1 20827166 20827166 G A MUL1 3'UTR 0.18 TCGA-FR-A44A-06 1 20827167 20827167 T A MUL1 3'UTR 0.19 TCGA-FR-A44A-06 1 216062108 216062108 G A USH2A Missense_Mutation p.P2628L 0.26 benign(0.12) TCGA-FR-A44A-06 1 216062109 216062109 G A USH2A Missense_Mutation p.P2628S 0.26 benign(0.137) TCGA-FR-A44A-06 1 225976980 225976980 G A SRP9 Silent p.K60K 0.16 TCGA-FR-A44A-06 1 228582667 228582667 G A TRIM11 Silent p.F382F 0.19 TCGA-FR-A44A-06 1 229661690 229661690 G A ABCB10 Silent p.L633L 0.26 TCGA-FR-A44A-06 1 22973793 22973793 G A C1QC Silent p.G85G 0.21 TCGA-FR-A44A-06 1 230979242 230979242 C T C1orf198 Missense_Mutation p.R262H 0.26 tolerated(0.51) benign(0.004) TCGA-FR-A44A-06 1 23191692 23191692 C T EPHB2 Silent p.T430T 0.10 TCGA-FR-A44A-06 1 233807255 233807255 G A KCNK1 Silent p.V330V 0.14 TCGA-FR-A44A-06 1 240979706 240979706 C T RGS7 Missense_Mutation p.G232S 0.19 tolerated(0.11) probably_damaging(0.998) TCGA-FR-A44A-06 1 247655240 247655240 G A OR2W5 RNA 0.25 TCGA-FR-A44A-06 1 248059676 248059676 G A OR2W3 Missense_Mutation p.G263E 0.22 tolerated(0.12) possibly_damaging(0.72) TCGA-FR-A44A-06 1 26603073 26603073 G A CEP85 Silent p.Q650Q 0.18 TCGA-FR-A44A-06 1 34035136 34035136 C T CSMD2 Missense_Mutation p.G2659R 0.17 deleterious(0.04) possibly_damaging(0.873) TCGA-FR-A44A-06 1 34329789 34329789 G A HMGB4 5'UTR 0.21 TCGA-FR-A44A-06 1 37270703 37270703 C T GRIK3 Missense_Mutation p.G817E 0.11 deleterious(0) probably_damaging(0.996) TCGA-FR-A44A-06 1 38079486 38079486 G A RSPO1 Missense_Mutation p.S172F 0.17 deleterious(0.04) benign(0.014) TCGA-FR-A44A-06 1 45486444 45486444 G A ZSWIM5 Silent p.L822L 0.18 TCGA-FR-A44A-06 1 53927275 53927275 G A DMRTB1 Missense_Mutation p.G236D 0.26 deleterious(0) possibly_damaging(0.666) TCGA-FR-A44A-06 1 54708911 54708911 T C SSBP3 Missense_Mutation p.N238S 0.17 tolerated(0.25) benign(0.345) TCGA-FR-A44A-06 1 55529118 55529118 C T PCSK9 Missense_Mutation p.A647V 0.17 deleterious(0) possibly_damaging(0.548) TCGA-FR-A44A-06 1 57347208 57347208 G A C8A Nonsense_Mutation p.W185* 0.21 TCGA-FR-A44A-06 1 59805664 59805664 G A FGGY Missense_Mutation p.R79Q 0.14 tolerated(0.12) possibly_damaging(0.629) TCGA-FR-A44A-06 1 6253066 6253066 G A RPL22 Missense_Mutation p.L56F 0.21 deleterious(0.04) probably_damaging(0.973) TCGA-FR-A44A-06 1 65124532 65124532 C T CACHD1 Missense_Mutation p.H592Y 0.33 tolerated(0.15) probably_damaging(0.994) TCGA-FR-A44A-06 1 6635077 6635077 G A TAS1R1 Silent p.K295K 0.21 TCGA-FR-A44A-06 1 70257737 70257737 C T LRRC7 Silent p.N67N 0.14 TCGA-FR-A44A-06 1 71873041 71873041 C T NEGR1 3'UTR 0.23 TCGA-FR-A44A-06 1 78430858 78430858 G A FUBP1 Silent p.F177F 0.20 TCGA-FR-A44A-06 1 82421735 82421735 G A LPHN2 Missense_Mutation p.E653K 0.19 tolerated(0.37) benign(0.236) TCGA-FR-A44A-06 1 92177954 92177954 G A TGFBR3 Missense_Mutation p.P671L 0.11 tolerated(0.18) benign(0.042) TCGA-FR-A44A-06 1 92446519 92446519 T C BRDT Missense_Mutation p.Y512H 0.19 deleterious(0.02) benign(0.299) TCGA-FR-A44A-06 1 94467352 94467352 C T ABCA4 Intron 0.12 TCGA-FR-A44A-06 1 94640188 94640188 C T ARHGAP29 Missense_Mutation p.R1008K 0.22 tolerated(0.62) benign(0.014) TCGA-FR-A44A-06 20 126378 126378 A C DEFB126 3'UTR 0.21 TCGA-FR-A44A-06 20 23472367 23472367 G A CST8 Silent p.R21R 0.17 TCGA-FR-A44A-06 20 2463909 2463909 G A ZNF343 Silent p.V566V 0.20 TCGA-FR-A44A-06 20 33875362 33875366 GGAGG - FAM83C Frame_Shift_Del p.P406Wfs*4 0.20 TCGA-FR-A44A-06 20 35835688 35835688 C T RPN2 Nonsense_Mutation p.Q235* 0.22 TCGA-FR-A44A-06 20 40747058 40747058 C T PTPRT Silent p.L989L 0.15 TCGA-FR-A44A-06 20 42355245 42355245 C T GTSF1L Silent p.R30R 0.13 TCGA-FR-A44A-06 20 43030009 43030009 G A HNF4A 5'UTR 0.17 TCGA-FR-A44A-06 20 43681761 43681761 T C STK4 Intron 0.34 TCGA-FR-A44A-06 20 47864962 47864962 T G ZNFX1 Silent p.R1533R 0.15 TCGA-FR-A44A-06 20 47864963 47864963 C T ZNFX1 Missense_Mutation p.R1533Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 20 51872844 51872844 G T TSHZ2 Silent p.L949L 0.29 TCGA-FR-A44A-06 20 9319581 9319581 C T PLCB4 Missense_Mutation p.S89L 0.19 tolerated(0.66) benign(0.046) TCGA-FR-A44A-06 20 9449275 9449275 C T PLCB4 Silent p.A1090A 0.14 TCGA-FR-A44A-06 21 37650650 37650650 T C DOPEY2 Missense_Mutation p.V1989A 0.15 tolerated(0.38) benign(0.001) TCGA-FR-A44A-06 21 39580552 39580552 C T DSCR10 RNA 0.20 TCGA-FR-A44A-06 21 47542442 47542442 C T COL6A2 Silent p.P535P 0.19 TCGA-FR-A44A-06 21 47674324 47674324 G A MCM3AP Missense_Mutation p.S1373F 0.12 tolerated(0.28) benign(0.001) TCGA-FR-A44A-06 21 47863861 47863861 G C PCNT Missense_Mutation p.R3280T 0.18 possibly_damaging(0.587) TCGA-FR-A44A-06 22 32330039 32330039 C T C22orf24 3'UTR 0.12 TCGA-FR-A44A-06 22 32330040 32330040 C T C22orf24 3'UTR 0.17 TCGA-FR-A44A-06 22 35796507 35796507 G A MCM5 Missense_Mutation p.A26T 0.13 tolerated(0.58) benign(0.002) TCGA-FR-A44A-06 22 37769958 37769958 C T ELFN2 Silent p.K539K 0.12 TCGA-FR-A44A-06 22 39353679 39353679 C T APOBEC3A 5'UTR 0.18 TCGA-FR-A44A-06 22 43460316 43460316 G A TTLL1 Missense_Mutation p.S173F 0.28 tolerated(0.72) benign(0.009) TCGA-FR-A44A-06 2 100623686 100623686 G A AFF3 Silent p.P162P 0.23 TCGA-FR-A44A-06 2 102965541 102965541 G A IL1RL1 Missense_Mutation p.G374R 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 2 106694331 106694331 G A C2orf40 Silent p.R132R 0.16 TCGA-FR-A44A-06 2 108868924 108868924 G A SULT1C3 Silent p.L92L 0.16 TCGA-FR-A44A-06 2 112620164 112620164 G A ANAPC1 Missense_Mutation p.S355F 0.14 deleterious(0) probably_damaging(0.998) TCGA-FR-A44A-06 2 119727769 119727769 C T MARCO Silent p.S93S 0.16 TCGA-FR-A44A-06 2 120012322 120012322 C T STEAP3 Silent p.L371L 0.35 TCGA-FR-A44A-06 2 120012323 120012323 T G STEAP3 Missense_Mutation p.S372A 0.35 tolerated(0.44) probably_damaging(0.995) TCGA-FR-A44A-06 2 120362782 120362782 A G PCDP1 Silent p.S350S 0.20 TCGA-FR-A44A-06 2 127821166 127821166 A T BIN1 Missense_Mutation p.F252Y 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 2 136609045 136609045 C T MCM6 Missense_Mutation p.R615K 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 2 137814559 137814559 G A THSD7B Missense_Mutation p.E237K 0.18 tolerated(0.16) possibly_damaging(0.78) TCGA-FR-A44A-06 2 15557752 15557752 G A NBAS Silent p.L888L 0.26 TCGA-FR-A44A-06 2 157414029 157414029 C T GPD2 Missense_Mutation p.P367L 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 2 160884782 160884782 G A PLA2R1 Missense_Mutation p.T349I 0.22 deleterious(0) possibly_damaging(0.694) TCGA-FR-A44A-06 2 167322486 167322486 G A SCN7A Missense_Mutation p.L226F 0.24 tolerated(0.07) benign(0.01) TCGA-FR-A44A-06 2 175676283 175676283 C T CHN1 Missense_Mutation p.G307E 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 2 179434605 179434605 G A TTN Silent p.T25418T 0.10 TCGA-FR-A44A-06 2 179463252 179463252 C T TTN Missense_Mutation p.G19031E 0.12 TCGA-FR-A44A-06 2 179515978 179515978 G A TTN Missense_Mutation p.P13206L 0.25 TCGA-FR-A44A-06 2 179583502 179583502 G A TTN Missense_Mutation p.P8142L 0.37 TCGA-FR-A44A-06 2 179641129 179641129 C T TTN Missense_Mutation p.R1821K 0.16 TCGA-FR-A44A-06 2 179665349 179665349 C A TTN Missense_Mutation p.S119I 0.17 TCGA-FR-A44A-06 2 188225437 188225437 C A CALCRL Missense_Mutation p.M223I 0.07 tolerated(0.13) benign(0.002) TCGA-FR-A44A-06 2 198950128 198950128 G A PLCL1 Silent p.E629E 0.23 TCGA-FR-A44A-06 2 207613772 207613772 C T MDH1B Silent p.E396E 0.31 TCGA-FR-A44A-06 2 228884838 228884838 C T SPHKAP Silent p.L244L 0.32 TCGA-FR-A44A-06 2 25471035 25471035 G A DNMT3A Silent p.A242A 0.14 TCGA-FR-A44A-06 2 25471036 25471036 G A DNMT3A Missense_Mutation p.A242V 0.14 tolerated(0.19) benign(0.052) TCGA-FR-A44A-06 2 33590564 33590564 G A LTBP1 Missense_Mutation p.D1569N 0.18 tolerated(0.51) benign(0.06) TCGA-FR-A44A-06 2 55844364 55844364 C G SMEK2 Missense_Mutation p.D20H 0.19 deleterious(0) benign(0.098) TCGA-FR-A44A-06 2 68592362 68592362 G A PLEK 5'UTR 0.21 TCGA-FR-A44A-06 2 71429639 71429639 C T PAIP2B Silent p.K27K 0.12 TCGA-FR-A44A-06 2 74143888 74143888 T G ACTG2 Missense_Mutation p.I328S 0.17 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-FR-A44A-06 2 74593379 74593379 G A DCTN1 Missense_Mutation p.P918S 0.17 tolerated(0.16) benign(0.071) TCGA-FR-A44A-06 2 74761257 74761257 C T LOXL3 Silent p.T682T 0.24 TCGA-FR-A44A-06 2 96780587 96780587 G A ADRA2B Silent p.F434F 0.22 TCGA-FR-A44A-06 2 99454592 99454592 C T KIAA1211L Missense_Mutation p.D77N 0.22 deleterious(0) possibly_damaging(0.728) TCGA-FR-A44A-06 3 101540501 101540501 G A NXPE3 Silent p.R461R 0.12 TCGA-FR-A44A-06 3 10443871 10443871 C T ATP2B2 Missense_Mutation p.E187K 0.13 tolerated(0.17) probably_damaging(0.998) TCGA-FR-A44A-06 3 108072515 108072515 G A HHLA2 Silent p.G102G 0.21 TCGA-FR-A44A-06 3 113697113 113697113 G A KIAA1407 Silent p.F842F 0.17 TCGA-FR-A44A-06 3 115394998 115394998 G A GAP43 Missense_Mutation p.D93N 0.28 deleterious(0.02) benign(0.107) TCGA-FR-A44A-06 3 118865578 118865578 G A C3orf30 Missense_Mutation p.R181K 0.14 tolerated(0.17) benign(0.001) TCGA-FR-A44A-06 3 119156946 119156946 C T TMEM39A Missense_Mutation p.G194S 0.14 tolerated(0.25) probably_damaging(0.993) TCGA-FR-A44A-06 3 121613238 121613238 C T SLC15A2 5'UTR 0.35 TCGA-FR-A44A-06 3 124153276 124153276 G A KALRN Silent p.E982E 0.12 TCGA-FR-A44A-06 3 133467347 133467347 G A TF Missense_Mutation p.M45I 0.17 deleterious(0.05) benign(0.037) TCGA-FR-A44A-06 3 14863024 14863024 G A FGD5 Missense_Mutation p.E816K 0.10 deleterious(0) probably_damaging(0.995) TCGA-FR-A44A-06 3 170797381 170797381 T C TNIK Missense_Mutation p.N1125S 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A44A-06 3 172224710 172224710 C T TNFSF10 Splice_Site p.X140_splice 0.18 TCGA-FR-A44A-06 3 183480001 183480001 C T YEATS2 Silent p.S627S 0.27 TCGA-FR-A44A-06 3 18390970 18390970 A C SATB1 Missense_Mutation p.F694V 0.13 deleterious(0) probably_damaging(0.998) TCGA-FR-A44A-06 3 186459945 186459945 G A KNG1 Nonsense_Mutation p.W587* 0.21 TCGA-FR-A44A-06 3 186459946 186459946 G A KNG1 Nonsense_Mutation p.W587* 0.20 TCGA-FR-A44A-06 3 25636062 25636062 T A RARB Nonsense_Mutation p.L348* 0.15 TCGA-FR-A44A-06 3 36897034 36897034 G A TRANK1 Silent p.S1349S 0.15 TCGA-FR-A44A-06 3 37778457 37778457 C T ITGA9 Silent p.F739F 0.15 TCGA-FR-A44A-06 3 38407206 38407206 C A XYLB Silent p.L162L 0.09 TCGA-FR-A44A-06 3 39307448 39307448 C T CX3CR1 Missense_Mutation p.E217K 0.13 tolerated(0.78) benign(0.009) TCGA-FR-A44A-06 3 50646016 50646016 G A CISH Missense_Mutation p.P27L 0.17 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-FR-A44A-06 3 52239921 52239921 C T ALAS1 Silent p.F289F 0.19 TCGA-FR-A44A-06 3 52239922 52239922 C T ALAS1 Missense_Mutation p.H290Y 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 3 62631468 62631468 G A CADPS Silent p.I418I 0.42 TCGA-FR-A44A-06 3 67548558 67548558 C T SUCLG2 Missense_Mutation p.V307M 0.46 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 3 7188217 7188217 C T GRM7 Missense_Mutation p.P200S 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 3 96945226 96945226 C T EPHA6 Silent p.F411F 0.22 TCGA-FR-A44A-06 3 98002148 98002148 G A OR5H2 Silent p.V139V 0.12 TCGA-FR-A44A-06 4 128688339 128688339 C T SLC25A31 Silent p.Y199Y 0.05 TCGA-FR-A44A-06 4 144445529 144445529 C T SMARCA5 Silent p.H143H 0.18 TCGA-FR-A44A-06 4 156634538 156634538 C T GUCY1A3 Missense_Mutation p.P459S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 4 158257781 158257781 G A GRIA2 Missense_Mutation p.E576K 0.21 deleterious(0.01) possibly_damaging(0.82) TCGA-FR-A44A-06 4 15937509 15937509 G A FGFBP1 3'UTR 0.28 TCGA-FR-A44A-06 4 185033885 185033885 C T ENPP6 Silent p.K311K 0.23 TCGA-FR-A44A-06 4 26661294 26661294 C T TBC1D19 Nonsense_Mutation p.Q186* 0.09 TCGA-FR-A44A-06 4 38777207 38777207 C G TLR10 Missense_Mutation p.R2T 0.22 tolerated(0.23) benign(0.003) TCGA-FR-A44A-06 4 41983819 41983819 G A DCAF4L1 Missense_Mutation p.E4K 0.10 tolerated(1) unknown(0) TCGA-FR-A44A-06 4 4322407 4322407 C T ZBTB49 Silent p.V554V 0.15 TCGA-FR-A44A-06 4 437214 437214 G A ZNF721 Missense_Mutation p.L348F 0.10 deleterious(0.05) probably_damaging(0.918) TCGA-FR-A44A-06 4 47746513 47746513 C T CORIN Silent p.P235P 0.11 TCGA-FR-A44A-06 4 66280150 66280150 G A EPHA5 Silent p.T513T 0.22 TCGA-FR-A44A-06 4 71255662 71255662 C T SMR3B 3'UTR 0.11 TCGA-FR-A44A-06 5 101813514 101813514 G A SLCO6A1 Missense_Mutation p.S223L 0.24 tolerated(0.26) benign(0.176) TCGA-FR-A44A-06 5 13729660 13729660 G A DNAH5 Missense_Mutation p.S3924L 0.15 benign(0.307) TCGA-FR-A44A-06 5 13920608 13920608 C T DNAH5 Nonsense_Mutation p.W260* 0.14 TCGA-FR-A44A-06 5 139930159 139930159 G A SRA1 3'UTR 0.34 TCGA-FR-A44A-06 5 140431769 140431769 C T PCDHB1 Silent p.H238H 0.20 TCGA-FR-A44A-06 5 140711318 140711318 T A PCDHGA1 Missense_Mutation p.V356D 0.42 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-FR-A44A-06 5 147665658 147665658 C T SPINK13 3'UTR 0.37 TCGA-FR-A44A-06 5 148632325 148632325 C T ABLIM3 Silent p.Y621Y 0.29 TCGA-FR-A44A-06 5 16701831 16701831 G A MYO10 Silent p.L891L 0.28 TCGA-FR-A44A-06 5 38482185 38482185 G A LIFR Missense_Mutation p.R936C 0.29 deleterious(0.03) benign(0.001) TCGA-FR-A44A-06 5 38950758 38950758 G A RICTOR Silent p.I1064I 0.19 TCGA-FR-A44A-06 5 40854673 40854673 A T CARD6 3'UTR 0.26 TCGA-FR-A44A-06 5 41052595 41052595 G A MROH2B Missense_Mutation p.S401F 0.15 tolerated(0.26) benign(0.005) TCGA-FR-A44A-06 5 54581585 54581585 G A DHX29 Missense_Mutation p.L391F 0.15 tolerated(0.4) benign(0.006) TCGA-FR-A44A-06 5 72383425 72383425 C T FCHO2 Missense_Mutation p.S752F 0.37 tolerated(0.08) possibly_damaging(0.863) TCGA-FR-A44A-06 6 109415048 109415048 G A SESN1 Missense_Mutation p.P77S 0.24 deleterious(0) benign(0.342) TCGA-FR-A44A-06 6 109983754 109983754 C A AK9 Missense_Mutation p.K148N 0.23 deleterious(0) probably_damaging(0.984) TCGA-FR-A44A-06 6 117650555 117650555 G A ROS1 Missense_Mutation p.S1768L 0.25 tolerated(0.1) benign(0.407) TCGA-FR-A44A-06 6 12122333 12122333 C T HIVEP1 Missense_Mutation p.P769S 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 6 130505715 130505715 G T SAMD3 Missense_Mutation p.S146Y 0.27 deleterious(0) probably_damaging(0.954) TCGA-FR-A44A-06 6 136913365 136913365 G A MAP3K5 Silent p.I1057I 0.09 TCGA-FR-A44A-06 6 144263189 144263189 C T PLAGL1 Missense_Mutation p.S255N 0.09 tolerated(0.14) benign(0.149) TCGA-FR-A44A-06 6 155571004 155571004 G A TIAM2 Silent p.E1284E 0.25 TCGA-FR-A44A-06 6 158735092 158735092 C T TULP4 Missense_Mutation p.S15F 0.23 deleterious(0) probably_damaging(0.996) TCGA-FR-A44A-06 6 158914673 158914673 G A TULP4 Missense_Mutation p.R567Q 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A44A-06 6 160510242 160510242 C T IGF2R Missense_Mutation p.P2142S 0.11 deleterious(0.03) probably_damaging(0.983) TCGA-FR-A44A-06 6 16286042 16286042 C T GMPR Missense_Mutation p.P225S 0.21 tolerated(0.26) possibly_damaging(0.889) TCGA-FR-A44A-06 6 166571830 166571830 C T T Nonsense_Mutation p.W427* 0.24 TCGA-FR-A44A-06 6 30075932 30075932 G T TRIM31 Missense_Mutation p.Q261K 0.15 tolerated(0.1) benign(0.067) TCGA-FR-A44A-06 6 30557594 30557594 C T ABCF1 Silent p.F692F 0.17 TCGA-FR-A44A-06 6 31895378 31895378 C T C2 5'UTR 0.18 TCGA-FR-A44A-06 6 33037074 33037074 G T HLA-DPA1 Missense_Mutation p.P117H 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-FR-A44A-06 6 35755672 35755672 C T CLPSL1 Missense_Mutation p.P84L 0.16 deleterious(0) probably_damaging(0.975) TCGA-FR-A44A-06 6 39304243 39304243 G C KIF6 3'UTR 0.14 TCGA-FR-A44A-06 6 40360648 40360648 C T LRFN2 Missense_Mutation p.M468I 0.11 tolerated(0.27) benign(0.401) TCGA-FR-A44A-06 6 41617424 41617424 G A MDFI Silent p.E109E 0.18 TCGA-FR-A44A-06 6 54806494 54806494 G A FAM83B Missense_Mutation p.E909K 0.18 tolerated(0.19) benign(0.118) TCGA-FR-A44A-06 6 73904563 73904563 C T KCNQ5 Missense_Mutation p.P761L 0.08 tolerated(0.07) possibly_damaging(0.894) TCGA-FR-A44A-06 6 83963383 83963383 C T ME1 Missense_Mutation p.R260Q 0.16 tolerated(0.15) benign(0.088) TCGA-FR-A44A-06 7 107698335 107698335 C T LAMB4 Silent p.G1107G 0.25 TCGA-FR-A44A-06 7 128356881 128356881 G A FAM71F1 Silent p.R88R 0.35 TCGA-FR-A44A-06 7 131844317 131844317 G A PLXNA4 Silent p.I1525I 0.32 TCGA-FR-A44A-06 7 139258072 139258072 C T HIPK2 Missense_Mutation p.M1066I 0.29 tolerated(0.35) benign(0.001) TCGA-FR-A44A-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-FR-A44A-06 7 141731583 141731583 G A MGAM Missense_Mutation p.G525E 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A44A-06 7 142247212 142247212 C T TRBV7-3 Missense_Mutation p.D82N 0.19 TCGA-FR-A44A-06 7 142643391 142643391 C T KEL Missense_Mutation p.R406Q 0.34 deleterious(0.01) probably_damaging(0.924) TCGA-FR-A44A-06 7 142723582 142723582 G A OR9A2 Missense_Mutation p.S213F 0.09 deleterious(0) probably_damaging(0.99) TCGA-FR-A44A-06 7 150163910 150163910 G A GIMAP8 Missense_Mutation p.D42N 0.34 tolerated(0.26) benign(0.15) TCGA-FR-A44A-06 7 48547507 48547507 C T ABCA13 Silent p.I4462I 0.16 TCGA-FR-A44A-06 7 4876152 4876152 G T RADIL Missense_Mutation p.P207H 0.25 deleterious(0.05) benign(0.045) TCGA-FR-A44A-06 7 50467743 50467743 C T IKZF1 Silent p.S284S 0.31 TCGA-FR-A44A-06 7 55565330 55565330 G A VOPP1 Missense_Mutation p.S56F 0.06 deleterious(0) probably_damaging(0.992) TCGA-FR-A44A-06 7 76054540 76054540 G A ZP3 Missense_Mutation p.E87K 0.23 tolerated(0.13) possibly_damaging(0.507) TCGA-FR-A44A-06 7 98557092 98557092 C T TRRAP Silent p.F2149F 0.20 TCGA-FR-A44A-06 7 98574128 98574128 C T TRRAP Missense_Mutation p.P2654L 0.12 probably_damaging(0.931) TCGA-FR-A44A-06 7 99699547 99699547 C T AP4M1 Missense_Mutation p.R35W 0.14 deleterious(0) possibly_damaging(0.892) TCGA-FR-A44A-06 8 107781756 107781756 G A ABRA Silent p.P221P 0.20 TCGA-FR-A44A-06 8 109796455 109796455 C T TMEM74 Silent p.L291L 0.23 TCGA-FR-A44A-06 8 121322263 121322263 C T COL14A1 Nonsense_Mutation p.R1473* 0.18 TCGA-FR-A44A-06 8 142366881 142366881 G A GPR20 3'UTR 0.28 TCGA-FR-A44A-06 8 145114633 145114633 G A OPLAH Missense_Mutation p.R78C 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A44A-06 8 18257759 18257759 C T NAT2 Silent p.I82I 0.24 TCGA-FR-A44A-06 8 18258334 18258334 C T NAT2 Missense_Mutation p.S274F 0.18 tolerated(0.51) benign(0.05) TCGA-FR-A44A-06 8 2813137 2813137 C T CSMD1 Nonsense_Mutation p.W3323* 0.12 TCGA-FR-A44A-06 8 28196965 28196965 G A PNOC 3'UTR 0.31 TCGA-FR-A44A-06 8 28206718 28206718 C T ZNF395 Missense_Mutation p.E452K 0.21 deleterious(0.01) possibly_damaging(0.642) TCGA-FR-A44A-06 8 69129915 69129915 C T PREX2 Missense_Mutation p.R1557C 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A44A-06 8 70650303 70650303 G A SLCO5A1 Silent p.I465I 0.19 TCGA-FR-A44A-06 8 8176073 8176073 G A SGK223 Missense_Mutation p.A1271V 0.31 probably_damaging(0.994) TCGA-FR-A44A-06 8 86388066 86388066 G T CA2 Missense_Mutation p.V162L 0.16 deleterious(0.01) benign(0.004) TCGA-FR-A44A-06 9 104238933 104238933 G A TMEM246 Missense_Mutation p.R148C 0.08 tolerated(0.18) benign(0.36) TCGA-FR-A44A-06 9 107266963 107266963 C T OR13F1 Silent p.T140T 0.26 TCGA-FR-A44A-06 9 111693340 111693340 T C IKBKAP Silent p.E29E 0.27 TCGA-FR-A44A-06 9 117071542 117071542 C T COL27A1 Silent p.V1740V 0.15 TCGA-FR-A44A-06 9 117666412 117666412 G A TNFSF8 Silent p.I168I 0.16 TCGA-FR-A44A-06 9 125140277 125140277 G A PTGS1 Missense_Mutation p.G65D 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A44A-06 9 135945895 135945895 C T CEL Missense_Mutation p.P448L 0.30 tolerated(0.2) benign(0.427) TCGA-FR-A44A-06 9 135945896 135945896 C T CEL Silent p.P448P 0.30 TCGA-FR-A44A-06 9 139412641 139412641 G A NOTCH1 Silent p.P401P 0.31 TCGA-FR-A44A-06 9 140173983 140173983 G A TOR4A Missense_Mutation p.G281D 0.28 tolerated(0.64) benign(0.002) TCGA-FR-A44A-06 9 141006898 141006898 C T CACNA1B Missense_Mutation p.S1826F 0.22 tolerated(0.7) benign(0.212) TCGA-FR-A44A-06 9 26925890 26925890 G A PLAA Nonsense_Mutation p.R268* 0.31 TCGA-FR-A44A-06 9 26925891 26925891 G A PLAA Silent p.I267I 0.32 TCGA-FR-A44A-06 9 35043420 35043420 G A C9orf131 Missense_Mutation p.G265E 0.26 tolerated(0.39) benign(0.221) TCGA-FR-A44A-06 9 72333557 72333557 G A PTAR1 Intron 0.25 TCGA-FR-A44A-06 9 78848402 78848402 C T PCSK5 Missense_Mutation p.S919L 0.18 tolerated(1) benign(0) TCGA-FR-A44A-06 9 90321406 90321406 C T DAPK1 Silent p.F1140F 0.15 TCGA-FR-A44A-06 9 97081945 97081945 A G NUTM2F Silent p.L479L 0.27 TCGA-FR-A44A-06 X 107840791 107840791 G A COL4A5 Missense_Mutation p.G591E 0.21 unknown(0) TCGA-FR-A44A-06 X 108619381 108619381 C T GUCY2F Missense_Mutation p.E1056K 0.30 deleterious(0.02) possibly_damaging(0.652) TCGA-FR-A44A-06 X 112024123 112024123 C A AMOT Missense_Mutation p.G822W 0.27 unknown(0) TCGA-FR-A44A-06 X 130678950 130678950 G A OR13H1 Silent p.R301R 0.25 TCGA-FR-A44A-06 X 132160103 132160103 G A USP26 Missense_Mutation p.P716S 0.26 tolerated(0.63) benign(0.001) TCGA-FR-A44A-06 X 134714072 134714072 C T DDX26B Nonsense_Mutation p.R790* 0.33 TCGA-FR-A44A-06 X 142718411 142718411 C T SLITRK4 Missense_Mutation p.D172N 0.31 tolerated(1) possibly_damaging(0.862) TCGA-FR-A44A-06 X 142967676 142967676 C T UBE2NL 3'UTR 0.22 TCGA-FR-A44A-06 X 144337489 144337489 G A SPANXN1 3'UTR 0.22 TCGA-FR-A44A-06 X 151870287 151870287 G A MAGEA6 3'UTR 0.20 TCGA-FR-A44A-06 X 20213260 20213260 C T RPS6KA3 Missense_Mutation p.R110Q 0.19 deleterious(0.01) benign(0.135) TCGA-FR-A44A-06 X 84525692 84525692 G A ZNF711 Missense_Mutation p.V382M 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A44A-06 X 84526326 84526326 C T ZNF711 Missense_Mutation p.P593L 0.26 tolerated(0.59) benign(0.006) TCGA-FR-A44A-06 X 99921877 99921877 C T SRPX2 Missense_Mutation p.S303F 0.31 deleterious(0.03) possibly_damaging(0.454) TCGA-FR-A69P-06 10 106214369 106214369 G A CCDC147 3'UTR 0.54 TCGA-FR-A69P-06 10 116213214 116213214 G A ABLIM1 Silent p.S490S 0.21 TCGA-FR-A69P-06 10 118225630 118225630 C T PNLIPRP3 Missense_Mutation p.P293S 0.40 deleterious(0.01) possibly_damaging(0.643) TCGA-FR-A69P-06 10 119003615 119003615 G A SLC18A2 Silent p.S85S 0.43 TCGA-FR-A69P-06 10 121203198 121203198 G A GRK5 Silent p.R400R 0.39 TCGA-FR-A69P-06 10 121203199 121203199 G A GRK5 Missense_Mutation p.V401I 0.39 tolerated(0.31) possibly_damaging(0.787) TCGA-FR-A69P-06 10 24834808 24834808 C T KIAA1217 Missense_Mutation p.S1796F 0.35 deleterious(0) probably_damaging(0.997) TCGA-FR-A69P-06 10 37436376 37436376 G T ANKRD30A Nonsense_Mutation p.E456* 0.19 TCGA-FR-A69P-06 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.41 deleterious(0) possibly_damaging(0.636) TCGA-FR-A69P-06 10 38299680 38299680 C T ZNF33A 5'UTR 0.36 TCGA-FR-A69P-06 10 48389640 48389640 G A RBP3 Missense_Mutation p.P413L 0.62 tolerated(0.05) possibly_damaging(0.852) TCGA-FR-A69P-06 10 72294580 72294580 G A PALD1 Missense_Mutation p.R403Q 0.62 tolerated(0.59) benign(0.009) TCGA-FR-A69P-06 10 76789962 76789962 T C KAT6B Silent p.L1794L 0.45 TCGA-FR-A69P-06 10 94562 94562 G A TUBB8 Silent p.F90F 0.36 TCGA-FR-A69P-06 11 108192078 108192078 C T ATM Missense_Mutation p.S2168L 0.43 deleterious(0) possibly_damaging(0.763) TCGA-FR-A69P-06 11 123813896 123813896 G A OR6T1 Missense_Mutation p.S217F 0.32 deleterious(0.05) possibly_damaging(0.801) TCGA-FR-A69P-06 11 123900476 123900476 G A OR10G8 Silent p.V49V 0.36 TCGA-FR-A69P-06 11 20657850 20657850 C T SLC6A5 Intron 0.36 TCGA-FR-A69P-06 11 26734223 26734223 G A SLC5A12 Missense_Mutation p.R124C 0.30 deleterious(0.02) probably_damaging(1) TCGA-FR-A69P-06 11 36614751 36614751 C T RAG2 Missense_Mutation p.G323E 0.35 tolerated(0.14) probably_damaging(1) TCGA-FR-A69P-06 11 4567174 4567174 C T OR52M1 Silent p.L252L 0.37 TCGA-FR-A69P-06 11 55038437 55038437 C T TRIM48 3'UTR 0.25 TCGA-FR-A69P-06 11 55321881 55321881 C T OR4C15 Silent p.F33F 0.17 TCGA-FR-A69P-06 11 6007457 6007457 G A OR52L1 Missense_Mutation p.S235F 0.31 deleterious(0) benign(0.133) TCGA-FR-A69P-06 11 65633313 65633313 C T MUS81 Missense_Mutation p.P513S 0.32 tolerated(0.41) benign(0.004) TCGA-FR-A69P-06 11 66476448 66476448 G A SPTBN2 Silent p.I372I 0.35 TCGA-FR-A69P-06 11 68193564 68193564 G A LRP5 Silent p.K1182K 0.35 TCGA-FR-A69P-06 11 78412625 78412625 T C TENM4 Missense_Mutation p.N1678S 0.61 tolerated(0.31) benign(0.001) TCGA-FR-A69P-06 11 92623667 92623667 G A FAT3 Nonsense_Mutation p.W4386* 0.29 TCGA-FR-A69P-06 12 2760815 2760815 G A CACNA1C Missense_Mutation p.E1367K 0.39 tolerated(0.17) benign(0.014) TCGA-FR-A69P-06 12 48741114 48741114 G A ZNF641 Missense_Mutation p.P80L 0.82 tolerated(0.33) probably_damaging(0.997) TCGA-FR-A69P-06 12 57963426 57963426 G A KIF5A Silent p.T359T 0.94 TCGA-FR-A69P-06 12 7842556 7842556 G A GDF3 Missense_Mutation p.S338F 0.92 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 12 80083553 80083553 C T PAWR Missense_Mutation p.E158K 0.38 deleterious(0) probably_damaging(0.991) TCGA-FR-A69P-06 12 95603588 95603588 G A FGD6 Missense_Mutation p.S491F 0.83 deleterious(0) possibly_damaging(0.863) TCGA-FR-A69P-06 13 25281310 25281310 C T ATP12A Silent p.I779I 0.18 TCGA-FR-A69P-06 13 29286936 29286936 C T SLC46A3 Missense_Mutation p.G314E 0.68 deleterious(0) probably_damaging(0.987) TCGA-FR-A69P-06 13 29598761 29598761 C T MTUS2 5'UTR 0.47 TCGA-FR-A69P-06 13 33635152 33635152 G A KL Missense_Mutation p.G646R 0.15 deleterious(0) probably_damaging(0.99) TCGA-FR-A69P-06 13 47409535 47409535 G A HTR2A Missense_Mutation p.P285S 0.09 tolerated(0.19) probably_damaging(1) TCGA-FR-A69P-06 13 84455278 84455278 C T SLITRK1 Missense_Mutation p.R122Q 0.32 deleterious(0.01) possibly_damaging(0.834) TCGA-FR-A69P-06 13 86368848 86368848 C T SLITRK6 Missense_Mutation p.R599Q 0.51 tolerated(0.6) benign(0.003) TCGA-FR-A69P-06 13 95847189 95847189 G A ABCC4 Silent p.T388T 0.85 TCGA-FR-A69P-06 14 100992375 100992375 C T WDR25 Missense_Mutation p.H424Y 0.18 deleterious(0) probably_damaging(0.976) TCGA-FR-A69P-06 14 104641436 104641436 C T KIF26A Missense_Mutation p.P771S 0.39 tolerated(0.51) benign(0.005) TCGA-FR-A69P-06 14 106405705 106405705 C T IGHV6-1 Missense_Mutation p.R90Q 0.42 deleterious(0.05) benign(0.285) TCGA-FR-A69P-06 14 106667830 106667830 C T IGHV3-20 Silent p.G34G 0.36 TCGA-FR-A69P-06 14 23893282 23893282 A C MYH7 Missense_Mutation p.V919G 0.17 deleterious(0) benign(0.362) TCGA-FR-A69P-06 14 45633728 45633728 G A FANCM Missense_Mutation p.G583D 0.53 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 14 55903309 55903309 G A TBPL2 Missense_Mutation p.S193L 0.47 deleterious(0.01) benign(0.019) TCGA-FR-A69P-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.52 TCGA-FR-A69P-06 14 71134364 71134364 T G TTC9 Missense_Mutation p.F164V 0.39 tolerated(0.44) possibly_damaging(0.874) TCGA-FR-A69P-06 14 78392252 78392252 C T ADCK1 Missense_Mutation p.S385L 0.50 deleterious(0) possibly_damaging(0.852) TCGA-FR-A69P-06 14 94845870 94845870 G A SERPINA1 Silent p.I332I 0.32 TCGA-FR-A69P-06 15 28196959 28196959 G A OCA2 Missense_Mutation p.S641L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A69P-06 15 40629626 40629626 C T C15orf52 Silent p.L279L 0.15 TCGA-FR-A69P-06 15 43067872 43067872 G A TTBK2 Missense_Mutation p.P487S 0.14 tolerated(0.1) benign(0.354) TCGA-FR-A69P-06 15 52529693 52529693 C T MYO5C Missense_Mutation p.D952N 0.59 tolerated(0.23) benign(0.04) TCGA-FR-A69P-06 15 53081458 53081458 G A ONECUT1 Silent p.P208P 0.18 TCGA-FR-A69P-06 15 58306086 58306086 G A ALDH1A2 Silent p.D111D 0.20 TCGA-FR-A69P-06 15 65490737 65490737 G A CILP Silent p.P629P 0.22 TCGA-FR-A69P-06 15 71535178 71535178 C T THSD4 Missense_Mutation p.P219S 0.23 tolerated(0.19) benign(0.002) TCGA-FR-A69P-06 15 84245374 84245374 G A SH3GL3 Missense_Mutation p.D169N 0.38 deleterious(0) probably_damaging(0.965) TCGA-FR-A69P-06 15 85341909 85341909 C T ZNF592 Missense_Mutation p.P943S 0.18 tolerated(0.3) benign(0.013) TCGA-FR-A69P-06 15 88423533 88423533 T C NTRK3 Missense_Mutation p.K768E 0.20 deleterious(0) probably_damaging(0.997) TCGA-FR-A69P-06 15 88522479 88522479 C T NTRK3 Intron 0.38 TCGA-FR-A69P-06 15 88522480 88522480 C T NTRK3 Intron 0.40 TCGA-FR-A69P-06 15 90023568 90023568 G A RHCG Silent p.I198I 0.19 TCGA-FR-A69P-06 15 91009295 91009295 C T IQGAP1 Silent p.S613S 0.24 TCGA-FR-A69P-06 16 1884221 1884221 C T MEIOB 3'UTR 0.47 TCGA-FR-A69P-06 16 20429440 20429440 C T ACSM5 Silent p.I88I 0.19 TCGA-FR-A69P-06 16 22361043 22361043 G A CDR2 Missense_Mutation p.A107V 0.43 tolerated(0.25) benign(0.048) TCGA-FR-A69P-06 16 24909400 24909400 C T SLC5A11 Missense_Mutation p.P326S 0.27 deleterious(0) probably_damaging(0.951) TCGA-FR-A69P-06 16 26147068 26147068 C T HS3ST4 Silent p.P290P 0.38 TCGA-FR-A69P-06 16 31335980 31335980 C T ITGAM Silent p.I723I 0.27 TCGA-FR-A69P-06 16 31392326 31392326 A G ITGAX Missense_Mutation p.K1129E 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A69P-06 16 57149395 57149395 C T CPNE2 Missense_Mutation p.S123F 0.13 deleterious(0) possibly_damaging(0.736) TCGA-FR-A69P-06 16 57918212 57918212 G A CNGB1 Silent p.S1204S 0.47 TCGA-FR-A69P-06 16 68405896 68405896 G A SMPD3 Silent p.F63F 0.29 TCGA-FR-A69P-06 16 71961519 71961519 C T IST1 Missense_Mutation p.P315S 0.38 tolerated(0.13) benign(0.213) TCGA-FR-A69P-06 16 77334253 77334253 G A ADAMTS18 Missense_Mutation p.P861S 0.53 tolerated(0.12) benign(0.119) TCGA-FR-A69P-06 16 85112703 85112703 G A KIAA0513 Intron 0.25 TCGA-FR-A69P-06 17 21217656 21217656 G A MAP2K3 3'UTR 0.11 TCGA-FR-A69P-06 17 33749390 33749390 C T SLFN12 Missense_Mutation p.E220K 0.25 tolerated(0.06) possibly_damaging(0.887) TCGA-FR-A69P-06 17 38345582 38345582 G A RAPGEFL1 Missense_Mutation p.G151R 0.32 tolerated(0.11) benign(0.028) TCGA-FR-A69P-06 17 39670314 39670314 C T KRT15 Silent p.V444V 0.50 TCGA-FR-A69P-06 17 40839806 40839806 C T CNTNAP1 Silent p.F371F 0.63 TCGA-FR-A69P-06 17 42849681 42849681 C T ADAM11 Missense_Mutation p.P197L 0.56 tolerated(0.15) benign(0.005) TCGA-FR-A69P-06 17 45752145 45752145 G A KPNB1 Missense_Mutation p.E637K 0.31 deleterious(0.01) benign(0.248) TCGA-FR-A69P-06 17 46688341 46688341 A C HOXB7 5'UTR 0.29 TCGA-FR-A69P-06 17 48190301 48190301 G A SAMD14 Missense_Mutation p.R432W 0.32 deleterious(0) unknown(0) TCGA-FR-A69P-06 17 48667891 48667891 C T CACNA1G Silent p.A787A 0.30 TCGA-FR-A69P-06 17 54543823 54543823 C T ANKFN1 Missense_Mutation p.S558L 0.29 deleterious(0) benign(0.164) TCGA-FR-A69P-06 17 6329137 6329137 G A AIPL1 Silent p.A266A 0.28 TCGA-FR-A69P-06 17 71415384 71415384 T C SDK2 Missense_Mutation p.T703A 0.58 deleterious(0.01) possibly_damaging(0.728) TCGA-FR-A69P-06 17 73222230 73222230 C T NUP85 Missense_Mutation p.H358Y 0.26 tolerated(0.15) benign(0.02) TCGA-FR-A69P-06 17 8738712 8738712 C T PIK3R6 Missense_Mutation p.E175K 0.14 deleterious(0.01) possibly_damaging(0.851) TCGA-FR-A69P-06 18 14763916 14763916 C T ANKRD30B Missense_Mutation p.S351L 0.25 deleterious(0.02) benign(0.053) TCGA-FR-A69P-06 18 21478990 21478990 C T LAMA3 Silent p.L1933L 0.50 TCGA-FR-A69P-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.35 benign(0.006) TCGA-FR-A69P-06 18 44559889 44559889 C T TCEB3B Missense_Mutation p.E583K 0.23 deleterious(0.05) benign(0.404) TCGA-FR-A69P-06 18 905392 905392 C T ADCYAP1 Missense_Mutation p.T2I 0.46 tolerated(0.07) benign(0.007) TCGA-FR-A69P-06 19 10943698 10943698 G A DNM2 3'Flank 0.25 TCGA-FR-A69P-06 19 12384540 12384540 G A ZNF44 Missense_Mutation p.T225I 0.36 deleterious(0) probably_damaging(0.93) TCGA-FR-A69P-06 19 14627707 14627707 C T DNAJB1 Silent p.G121G 0.58 TCGA-FR-A69P-06 19 2247808 2247808 C T SF3A2 Missense_Mutation p.P220S 0.61 tolerated_low_confidence(0.08) unknown(0) TCGA-FR-A69P-06 19 22574496 22574496 C T ZNF98 Missense_Mutation p.G514E 0.27 tolerated(0.07) benign(0.009) TCGA-FR-A69P-06 19 2339852 2339852 G C SPPL2B RNA 0.50 TCGA-FR-A69P-06 19 2989579 2989579 G A TLE6 Missense_Mutation p.R347K 0.17 tolerated(0.61) benign(0.242) TCGA-FR-A69P-06 19 34891002 34891002 G A GPI 3'UTR 0.51 TCGA-FR-A69P-06 19 36033244 36033244 G A GAPDHS Nonsense_Mutation p.W158* 0.16 TCGA-FR-A69P-06 19 36342507 36342507 C T NPHS1 Silent p.T42T 0.19 TCGA-FR-A69P-06 19 39293030 39293030 G A LGALS4 Silent p.F195F 0.53 TCGA-FR-A69P-06 19 41512810 41512810 G A CYP2B6 Missense_Mutation p.G162E 0.64 tolerated(0.14) probably_damaging(0.943) TCGA-FR-A69P-06 19 42191041 42191041 G A CEACAM7 Missense_Mutation p.S59F 0.66 deleterious(0) probably_damaging(0.976) TCGA-FR-A69P-06 19 43087458 43087458 G A CEACAM8 Silent p.L330L 0.23 TCGA-FR-A69P-06 19 44039589 44039589 C T ZNF575 Missense_Mutation p.A163V 0.07 tolerated(0.22) probably_damaging(0.986) TCGA-FR-A69P-06 19 51329034 51329034 G A KLK15 3'UTR 0.22 TCGA-FR-A69P-06 19 55179101 55179101 G A LILRB4 Missense_Mutation p.E353K 0.17 deleterious(0.03) benign(0.047) TCGA-FR-A69P-06 19 55377324 55377324 C T KIR3DL2 Silent p.L355L 0.72 TCGA-FR-A69P-06 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.32 tolerated(0.1) benign(0) TCGA-FR-A69P-06 19 56466488 56466488 C T NLRP8 Missense_Mutation p.P355L 0.29 tolerated(0.48) benign(0.148) TCGA-FR-A69P-06 19 58067816 58067816 G A ZNF550 5'Flank 0.18 TCGA-FR-A69P-06 19 6387446 6387446 G A GTF2F1 Missense_Mutation p.R151W 0.17 deleterious(0) benign(0.041) TCGA-FR-A69P-06 19 6387447 6387447 G A GTF2F1 Silent p.A150A 0.16 TCGA-FR-A69P-06 19 8807915 8807915 G A ACTL9 Silent p.S379S 0.18 TCGA-FR-A69P-06 19 9011382 9011382 T A MUC16 Missense_Mutation p.T12951S 0.67 probably_damaging(0.995) TCGA-FR-A69P-06 19 9056805 9056805 C T MUC16 Nonsense_Mutation p.W10214* 0.52 TCGA-FR-A69P-06 19 9057632 9057632 C T MUC16 Silent p.V9938V 0.63 TCGA-FR-A69P-06 19 9066570 9066570 G A MUC16 Missense_Mutation p.S6959F 0.23 unknown(0) TCGA-FR-A69P-06 1 104112305 104112305 G A AMY2B Intron 0.31 TCGA-FR-A69P-06 1 104297121 104297121 G A AMY1C Silent p.K293K 0.14 TCGA-FR-A69P-06 1 109241864 109241864 C T PRPF38B Missense_Mutation p.S288F 0.32 deleterious(0) unknown(0) TCGA-FR-A69P-06 1 110596620 110596620 C T STRIP1 3'UTR 0.37 TCGA-FR-A69P-06 1 110596621 110596621 C T STRIP1 3'UTR 0.36 TCGA-FR-A69P-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.73 tolerated(0.06) benign(0.006) TCGA-FR-A69P-06 1 119467364 119467364 G A TBX15 Missense_Mutation p.P94S 0.49 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 1 120465350 120465350 G A NOTCH2 Silent p.D1637D 0.57 TCGA-FR-A69P-06 1 120539360 120539360 C T NOTCH2 Intron 0.17 TCGA-FR-A69P-06 1 12089873 12089873 C T MIIP Missense_Mutation p.P256L 0.78 deleterious(0.02) possibly_damaging(0.779) TCGA-FR-A69P-06 1 151739683 151739683 C T OAZ3 Missense_Mutation p.S26F 0.53 tolerated(0.56) benign(0.026) TCGA-FR-A69P-06 1 152127472 152127472 C T RPTN Silent p.L701L 0.33 TCGA-FR-A69P-06 1 152278832 152278832 C T FLG Missense_Mutation p.E2844K 0.24 benign(0.002) TCGA-FR-A69P-06 1 152281232 152281232 C T FLG Missense_Mutation p.A2044T 0.52 possibly_damaging(0.787) TCGA-FR-A69P-06 1 152538652 152538652 T C LCE3E Silent p.Q11Q 0.60 TCGA-FR-A69P-06 1 154248187 154248187 C T HAX1 3'UTR 0.51 TCGA-FR-A69P-06 1 155025184 155025184 C T ADAM15 Silent p.A39A 0.15 TCGA-FR-A69P-06 1 157667118 157667118 C A FCRL3 Missense_Mutation p.R219M 0.35 deleterious(0) probably_damaging(0.981) TCGA-FR-A69P-06 1 159799920 159799920 C T SLAMF8 Missense_Mutation p.S102F 0.29 deleterious(0.01) probably_damaging(0.945) TCGA-FR-A69P-06 1 167792341 167792341 A C ADCY10 Missense_Mutation p.V1358G 0.53 deleterious(0) possibly_damaging(0.883) TCGA-FR-A69P-06 1 169565348 169565348 C T SELP Missense_Mutation p.G639E 0.54 tolerated(1) benign(0.001) TCGA-FR-A69P-06 1 173010835 173010835 C T TNFSF18 Nonsense_Mutation p.W91* 0.29 TCGA-FR-A69P-06 1 173517613 173517613 G T SLC9C2 Missense_Mutation p.T459K 0.47 deleterious(0.02) benign(0.055) TCGA-FR-A69P-06 1 180144484 180144484 C T QSOX1 Missense_Mutation p.S132L 0.44 tolerated(0.15) benign(0.168) TCGA-FR-A69P-06 1 182571103 182571103 C A RGS16 Nonsense_Mutation p.E129* 0.37 TCGA-FR-A69P-06 1 190067360 190067360 C T BRINP3 Missense_Mutation p.D697N 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A69P-06 1 203708742 203708742 C T ATP2B4 Silent p.S1126S 0.54 TCGA-FR-A69P-06 1 205585717 205585717 G A ELK4 Missense_Mutation p.P418L 0.34 tolerated(0.14) benign(0.025) TCGA-FR-A69P-06 1 209782395 209782395 T C CAMK1G Missense_Mutation p.Y236H 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A69P-06 1 223286175 223286175 G A TLR5 Missense_Mutation p.P67S 0.17 tolerated(0.15) benign(0.22) TCGA-FR-A69P-06 1 236343186 236343186 C T GPR137B Missense_Mutation p.S232F 0.46 deleterious(0) probably_damaging(0.99) TCGA-FR-A69P-06 1 237729996 237729996 T C RYR2 Missense_Mutation p.V1115A 0.41 probably_damaging(0.998) TCGA-FR-A69P-06 1 240255764 240255764 C T FMN2 Missense_Mutation p.P119S 0.32 unknown(0) TCGA-FR-A69P-06 1 247588324 247588324 G A NLRP3 Missense_Mutation p.E527K 0.14 deleterious(0) probably_damaging(0.998) TCGA-FR-A69P-06 1 247654918 247654918 G A OR2W5 RNA 0.30 TCGA-FR-A69P-06 1 248813495 248813495 C T OR2T27 Missense_Mutation p.A231T 1.00 tolerated(0.19) benign(0.082) TCGA-FR-A69P-06 1 27105628 27105628 C T ARID1A Missense_Mutation p.P1747S 0.75 benign(0.003) TCGA-FR-A69P-06 1 34662998 34662998 C A C1orf94 Missense_Mutation p.P165T 0.81 tolerated_low_confidence(0.16) benign(0.024) TCGA-FR-A69P-06 1 54665860 54665860 C T MRPL37 5'UTR 0.72 TCGA-FR-A69P-06 1 62672618 62672618 C T L1TD1 Silent p.I106I 0.75 TCGA-FR-A69P-06 20 30432476 30432476 G A FOXS1 Silent p.P290P 0.39 TCGA-FR-A69P-06 20 4228604 4228604 G A ADRA1D Missense_Mutation p.S334F 0.33 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A69P-06 20 49225175 49225175 G A FAM65C Missense_Mutation p.T258M 0.19 tolerated(0.06) possibly_damaging(0.795) TCGA-FR-A69P-06 20 49626652 49626652 G A KCNG1 Missense_Mutation p.S75L 0.32 tolerated(0.39) benign(0.003) TCGA-FR-A69P-06 20 54823787 54823787 G A MC3R 5'Flank 0.55 TCGA-FR-A69P-06 20 58883604 58883604 C T MIR646 RNA 0.44 TCGA-FR-A69P-06 20 61598538 61598538 G A SLC17A9 Intron 0.16 TCGA-FR-A69P-06 22 18314777 18314777 G A MICAL3 Silent p.A966A 0.29 TCGA-FR-A69P-06 22 22024875 22024875 C T PPIL2 Missense_Mutation p.R35C 0.37 deleterious(0) possibly_damaging(0.899) TCGA-FR-A69P-06 22 25280099 25280099 C T SGSM1 Silent p.D580D 0.38 TCGA-FR-A69P-06 22 29446435 29446435 C T ZNRF3 Nonsense_Mutation p.Q756* 0.34 TCGA-FR-A69P-06 22 38340208 38340208 G A C22orf23 Missense_Mutation p.L210F 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A69P-06 22 39884892 39884892 C T MGAT3 Missense_Mutation p.R514C 0.62 deleterious_low_confidence(0.05) benign(0.083) TCGA-FR-A69P-06 22 44967325 44967325 C T LINC00207 RNA 0.46 TCGA-FR-A69P-06 22 50596673 50596673 C T MOV10L1 Intron 0.17 TCGA-FR-A69P-06 2 107460171 107460171 G A ST6GAL2 Missense_Mutation p.S88F 0.60 benign(0.332) TCGA-FR-A69P-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A69P-06 2 130831883 130831883 C T POTEF Silent p.Q1054Q 0.26 TCGA-FR-A69P-06 2 160241875 160241875 T G BAZ2B Missense_Mutation p.K1159N 0.68 probably_damaging(0.997) TCGA-FR-A69P-06 2 169684707 169684707 G A NOSTRIN Missense_Mutation p.M79I 0.37 deleterious(0) probably_damaging(0.998) TCGA-FR-A69P-06 2 179257198 179257198 A G OSBPL6 Missense_Mutation p.N861D 0.52 deleterious(0) probably_damaging(0.998) TCGA-FR-A69P-06 2 179465822 179465822 C T TTN Silent p.P18603P 0.28 TCGA-FR-A69P-06 2 196620881 196620881 G A DNAH7 Silent p.F3854F 0.60 TCGA-FR-A69P-06 2 220136381 220136381 G A TUBA4B RNA 0.21 TCGA-FR-A69P-06 2 227919361 227919361 C T COL4A4 Missense_Mutation p.E937K 0.14 unknown(0) TCGA-FR-A69P-06 2 228783561 228783561 G A DAW1 Missense_Mutation p.E347K 0.27 deleterious(0) probably_damaging(0.98) TCGA-FR-A69P-06 2 229890656 229890656 C T PID1 Missense_Mutation p.D147N 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-FR-A69P-06 2 231372789 231372789 T C SP100 Intron 0.58 TCGA-FR-A69P-06 2 234545582 234545582 G A UGT1A10 Silent p.K138K 0.58 TCGA-FR-A69P-06 2 44573448 44573448 C T PREPL Missense_Mutation p.E101K 0.42 deleterious(0.03) benign(0.107) TCGA-FR-A69P-06 2 51254931 51254931 C T NRXN1 Missense_Mutation p.E161K 0.17 tolerated(0.09) benign(0.023) TCGA-FR-A69P-06 2 71591282 71591282 C T ZNF638 Silent p.S539S 0.24 TCGA-FR-A69P-06 2 85280376 85280376 T G KCMF1 Silent p.R330R 0.14 TCGA-FR-A69P-06 2 89278059 89278059 G A IGKV3-7 Silent p.F92F 0.46 TCGA-FR-A69P-06 2 97529495 97529495 G A SEMA4C Missense_Mutation p.P456L 0.49 tolerated(0.05) benign(0.077) TCGA-FR-A69P-06 3 10258705 10258705 T C IRAK2 Silent p.G292G 0.54 TCGA-FR-A69P-06 3 12203093 12203093 C T TIMP4 5'Flank 0.33 TCGA-FR-A69P-06 3 125786895 125786895 C T SLC41A3 Silent p.E56E 0.45 TCGA-FR-A69P-06 3 139062829 139062829 C T MRPS22 5'UTR 0.21 TCGA-FR-A69P-06 3 151451940 151451940 C T AADACL2 Silent p.I39I 0.41 TCGA-FR-A69P-06 3 152553840 152553840 T C P2RY1 Missense_Mutation p.M90T 0.26 deleterious(0) probably_damaging(0.968) TCGA-FR-A69P-06 3 187443325 187443325 G A BCL6 Missense_Mutation p.P601S 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 3 195517205 195517205 C T MUC4 Missense_Mutation p.G416R 0.26 unknown(0) TCGA-FR-A69P-06 3 30769703 30769703 G A GADL1 3'UTR 0.61 TCGA-FR-A69P-06 3 38151622 38151622 T G DLEC1 Missense_Mutation p.L1098R 0.28 deleterious(0) probably_damaging(0.983) TCGA-FR-A69P-06 3 38739400 38739400 G A SCN10A Missense_Mutation p.L1771F 0.42 deleterious(0.01) probably_damaging(1) TCGA-FR-A69P-06 3 49699120 49699120 C T BSN Missense_Mutation p.P3281L 0.26 unknown(0) TCGA-FR-A69P-06 3 52550414 52550414 G A STAB1 Missense_Mutation p.G1396E 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 3 57232472 57232472 C T HESX1 Missense_Mutation p.D136N 0.50 deleterious(0.01) possibly_damaging(0.701) TCGA-FR-A69P-06 3 64142934 64142934 G A PRICKLE2 Silent p.L168L 0.24 TCGA-FR-A69P-06 3 93598108 93598108 G A PROS1 Missense_Mutation p.R515C 0.33 deleterious(0) probably_damaging(0.996) TCGA-FR-A69P-06 3 97356795 97356795 G A EPHA6 Missense_Mutation p.D885N 0.25 tolerated(0.1) probably_damaging(0.957) TCGA-FR-A69P-06 3 97367254 97367254 G A EPHA6 Intron 0.30 TCGA-FR-A69P-06 4 100200610 100200610 C T ADH1A Missense_Mutation p.G359E 0.61 deleterious(0) probably_damaging(0.944) TCGA-FR-A69P-06 4 100522785 100522785 G A MTTP Missense_Mutation p.G420S 0.14 tolerated(0.42) benign(0.145) TCGA-FR-A69P-06 4 147861013 147861013 G A TTC29 Missense_Mutation p.P12L 0.30 deleterious(0) benign(0.001) TCGA-FR-A69P-06 4 151271270 151271270 C T LRBA Nonsense_Mutation p.W2423* 0.53 TCGA-FR-A69P-06 4 158242713 158242713 G A GRIA2 Missense_Mutation p.E282K 0.37 tolerated(0.4) benign(0.082) TCGA-FR-A69P-06 4 184931615 184931615 C T STOX2 Nonsense_Mutation p.Q542* 0.24 TCGA-FR-A69P-06 4 185705121 185705121 C T ACSL1 Missense_Mutation p.R112Q 0.51 deleterious(0) possibly_damaging(0.704) TCGA-FR-A69P-06 4 187455191 187455191 C T MTNR1A Silent p.R235R 0.50 TCGA-FR-A69P-06 4 22394187 22394187 G A GPR125 Missense_Mutation p.P870S 0.28 deleterious(0.05) probably_damaging(0.993) TCGA-FR-A69P-06 4 26667998 26667998 G A TBC1D19 Missense_Mutation p.G212D 0.35 deleterious(0.01) benign(0.261) TCGA-FR-A69P-06 4 39482054 39482054 C T LIAS 3'Flank 0.38 TCGA-FR-A69P-06 4 47427765 47427765 G A GABRB1 Silent p.T385T 0.58 TCGA-FR-A69P-06 4 48384804 48384804 C T SLAIN2 Missense_Mutation p.S361L 0.61 tolerated(0.08) probably_damaging(0.99) TCGA-FR-A69P-06 4 6864090 6864090 C T KIAA0232 Missense_Mutation p.P661S 0.43 tolerated(0.14) benign(0.221) TCGA-FR-A69P-06 4 89199420 89199420 C T PPM1K Missense_Mutation p.E106K 0.45 tolerated(0.41) benign(0.011) TCGA-FR-A69P-06 5 102888084 102888084 A C NUDT12 Missense_Mutation p.V371G 0.81 deleterious(0) probably_damaging(0.987) TCGA-FR-A69P-06 5 121739485 121739485 C T SNCAIP Intron 0.76 TCGA-FR-A69P-06 5 143853695 143853695 G A KCTD16 3'UTR 0.67 TCGA-FR-A69P-06 5 161324445 161324445 C T GABRA1 3'UTR 0.77 TCGA-FR-A69P-06 5 7867292 7867292 G A FASTKD3 Missense_Mutation p.A302V 0.81 deleterious(0.02) possibly_damaging(0.902) TCGA-FR-A69P-06 5 82816886 82816886 G A VCAN Missense_Mutation p.E921K 0.74 deleterious(0) probably_damaging(0.992) TCGA-FR-A69P-06 6 29556293 29556293 C T OR2H2 Missense_Mutation p.S191F 0.32 tolerated(0.08) benign(0.006) TCGA-FR-A69P-06 6 35088789 35088789 C T TCP11 Missense_Mutation p.M217I 0.75 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A69P-06 6 43250671 43250671 G A TTBK1 Silent p.G731G 0.75 TCGA-FR-A69P-06 6 71603952 71603952 G A B3GAT2 Silent p.S205S 0.85 TCGA-FR-A69P-06 6 7579887 7579887 G T DSP Missense_Mutation p.W1155L 0.32 benign(0.37) TCGA-FR-A69P-06 7 100853624 100853624 G A PLOD3 Silent p.F534F 0.57 TCGA-FR-A69P-06 7 100861331 100861331 C T ZNHIT1 5'UTR 0.71 TCGA-FR-A69P-06 7 101847806 101847806 C T CUX1 Silent p.L1026L 0.28 TCGA-FR-A69P-06 7 101847807 101847807 T C CUX1 Missense_Mutation p.L1026P 0.28 deleterious(0.04) unknown(0) TCGA-FR-A69P-06 7 107615834 107615834 G A LAMB1 Missense_Mutation p.S405F 0.60 deleterious(0) probably_damaging(0.995) TCGA-FR-A69P-06 7 113520021 113520021 G A PPP1R3A Missense_Mutation p.P376S 0.24 tolerated(0.5) benign(0.063) TCGA-FR-A69P-06 7 138341226 138341226 C T SVOPL Silent p.T167T 0.18 TCGA-FR-A69P-06 7 142168493 142168493 C T TRBV5-4 Missense_Mutation p.G77E 0.12 deleterious(0.04) possibly_damaging(0.781) TCGA-FR-A69P-06 7 150501479 150501479 C T TMEM176A Silent p.L195L 0.58 TCGA-FR-A69P-06 7 17379639 17379639 C T AHR Silent p.P730P 0.70 TCGA-FR-A69P-06 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.57 tolerated(0.64) benign(0.002) TCGA-FR-A69P-06 7 32209518 32209518 C T PDE1C Missense_Mutation p.G63R 0.23 tolerated_low_confidence(0.14) benign(0.235) TCGA-FR-A69P-06 7 33390918 33390918 C T BBS9 Missense_Mutation p.S507F 0.72 deleterious(0) probably_damaging(0.953) TCGA-FR-A69P-06 7 34867112 34867112 G A NPSR1 Missense_Mutation p.G193D 0.64 deleterious(0) probably_damaging(0.954) TCGA-FR-A69P-06 7 36588256 36588256 G A AOAH Silent p.I365I 0.61 TCGA-FR-A69P-06 7 47840382 47840382 G A PKD1L1 Silent p.F2686F 0.12 TCGA-FR-A69P-06 7 5800642 5800642 C T RNF216 Missense_Mutation p.R20Q 0.46 tolerated_low_confidence(0.06) benign(0.006) TCGA-FR-A69P-06 7 6204478 6204478 G A CYTH3 3'UTR 0.67 TCGA-FR-A69P-06 7 82545616 82545616 G A PCLO Missense_Mutation p.P3896S 0.21 unknown(0) TCGA-FR-A69P-06 7 82580064 82580064 C T PCLO Missense_Mutation p.M3280I 0.66 unknown(0) TCGA-FR-A69P-06 7 82581311 82581311 C T PCLO Silent p.G2986G 0.65 TCGA-FR-A69P-06 7 82582602 82582602 G A PCLO Missense_Mutation p.S2556F 0.60 unknown(0) TCGA-FR-A69P-06 7 86394514 86394514 G A GRM3 Missense_Mutation p.G18E 0.17 tolerated(0.34) benign(0.05) TCGA-FR-A69P-06 7 94055774 94055774 G A COL1A2 Missense_Mutation p.E1013K 0.62 unknown(0) TCGA-FR-A69P-06 7 97846714 97846714 G A TECPR1 Silent p.P1162P 0.42 TCGA-FR-A69P-06 8 100729538 100729538 G A VPS13B Silent p.G2223G 0.23 TCGA-FR-A69P-06 8 105509746 105509746 G A LRP12 Missense_Mutation p.S345F 0.45 deleterious(0) probably_damaging(0.98) TCGA-FR-A69P-06 8 113246630 113246630 C T CSMD3 Silent p.K3568K 0.18 TCGA-FR-A69P-06 8 113529403 113529403 C T CSMD3 Missense_Mutation p.R1539Q 0.29 deleterious(0) probably_damaging(0.986) TCGA-FR-A69P-06 8 141321400 141321400 G A TRAPPC9 Silent p.L621L 0.56 TCGA-FR-A69P-06 8 145113014 145113014 G A OPLAH Silent p.F329F 0.26 TCGA-FR-A69P-06 8 17513423 17513423 C T MTUS1 Silent p.R1019R 0.54 TCGA-FR-A69P-06 8 40625172 40625172 G A ZMAT4 Silent p.L60L 0.15 TCGA-FR-A69P-06 8 52321411 52321411 G A PXDNL Missense_Mutation p.P925S 0.54 tolerated(0.42) benign(0.027) TCGA-FR-A69P-06 8 54141904 54141904 C T OPRK1 Missense_Mutation p.D366N 0.29 tolerated(0.18) benign(0.002) TCGA-FR-A69P-06 8 57228755 57228755 C T SDR16C5 Missense_Mutation p.G51E 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 8 61757451 61757451 C T CHD7 Missense_Mutation p.H1627Y 0.26 probably_damaging(0.977) TCGA-FR-A69P-06 8 63659527 63659527 C T NKAIN3 Missense_Mutation p.R104W 0.32 deleterious(0.02) probably_damaging(0.978) TCGA-FR-A69P-06 8 68204357 68204357 A G ARFGEF1 Missense_Mutation p.L214S 0.64 deleterious(0.04) benign(0.03) TCGA-FR-A69P-06 8 76456130 76456130 G A HNF4G Missense_Mutation p.G58E 0.57 deleterious(0) probably_damaging(0.999) TCGA-FR-A69P-06 8 79610720 79610720 C T ZC2HC1A Missense_Mutation p.H226Y 0.51 tolerated(0.29) possibly_damaging(0.806) TCGA-FR-A69P-06 9 107367371 107367371 C T OR13C2 Missense_Mutation p.E180K 0.47 deleterious(0) probably_damaging(0.998) TCGA-FR-A69P-06 9 109746501 109746501 C T ZNF462 Silent p.S2289S 0.73 TCGA-FR-A69P-06 9 117062911 117062911 C T COL27A1 Missense_Mutation p.P1549S 0.83 unknown(0) TCGA-FR-A69P-06 9 134350745 134350745 C T PRRC2B Missense_Mutation p.R1077C 0.85 deleterious(0) probably_damaging(0.932) TCGA-FR-A69P-06 9 136507525 136507525 C T DBH Missense_Mutation p.T228I 0.89 deleterious(0) probably_damaging(1) TCGA-FR-A69P-06 9 15175054 15175054 C T TTC39B Missense_Mutation p.E641K 0.72 tolerated(0.43) possibly_damaging(0.595) TCGA-FR-A69P-06 9 78848418 78848418 G A PCSK5 Nonsense_Mutation p.W924* 0.76 TCGA-FR-A69P-06 X 111019567 111019567 C T TRPC5 Missense_Mutation p.E966K 0.61 deleterious_low_confidence(0.01) benign(0.037) TCGA-FR-A69P-06 X 130419275 130419275 G A IGSF1 Missense_Mutation p.A182V 0.67 deleterious(0.05) possibly_damaging(0.702) TCGA-FR-A69P-06 X 135047054 135047054 G A MMGT1 3'UTR 0.47 TCGA-FR-A69P-06 X 31196837 31196837 C T DMD Missense_Mutation p.R3391Q 0.53 benign(0.417) TCGA-FR-A69P-06 X 3239523 3239523 C T MXRA5 Silent p.G1401G 0.60 TCGA-FR-A69P-06 X 43655058 43655058 C T MAOB Silent p.E232E 0.55 TCGA-FR-A69P-06 X 71428081 71428081 G A ERCC6L Missense_Mutation p.P179L 0.64 deleterious(0.05) benign(0.071) TCGA-FR-A69P-06 X 71428082 71428082 G A ERCC6L Missense_Mutation p.P179S 0.66 tolerated(0.71) benign(0.006) TCGA-FR-A726-01 10 100195477 100195477 G A HPS1 Missense_Mutation p.S57F 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 101716648 101716648 G A DNMBP Missense_Mutation p.P195S 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 102089731 102089731 C T PKD2L1 Missense_Mutation p.G44R 0.37 tolerated(0.53) benign(0.001) TCGA-FR-A726-01 10 102247320 102247320 G A SEC31B 3'UTR 0.47 TCGA-FR-A726-01 10 102256904 102256904 G A SEC31B Silent p.P708P 0.31 TCGA-FR-A726-01 10 102305732 102305732 C T HIF1AN Silent p.F252F 0.25 TCGA-FR-A726-01 10 102584701 102584701 G A PAX2 Intron 0.07 TCGA-FR-A726-01 10 102782022 102782022 G A PDZD7 Silent p.C221C 0.36 TCGA-FR-A726-01 10 102794491 102794491 C T SFXN3 Missense_Mutation p.R18C 0.26 deleterious(0) probably_damaging(0.931) TCGA-FR-A726-01 10 102986812 102986812 G A LBX1 3'UTR 0.41 TCGA-FR-A726-01 10 103911987 103911987 G A NOLC1 5'UTR 0.32 TCGA-FR-A726-01 10 104814195 104814195 C T CNNM2 Silent p.L625L 0.35 TCGA-FR-A726-01 10 105006359 105006359 G A RPEL1 Silent p.R202R 0.34 TCGA-FR-A726-01 10 105036984 105036984 G A INA Missense_Mutation p.E6K 0.11 deleterious(0.02) benign(0.073) TCGA-FR-A726-01 10 105037767 105037767 G A INA Missense_Mutation p.E267K 0.23 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 10 105792440 105792440 C T COL17A1 Missense_Mutation p.G1477E 0.07 unknown(0) TCGA-FR-A726-01 10 105792441 105792441 C T COL17A1 Missense_Mutation p.G1477R 0.07 unknown(0) TCGA-FR-A726-01 10 105891225 105891225 C T WDR96 Silent p.V1565V 0.27 TCGA-FR-A726-01 10 105923972 105923972 C A WDR96 Missense_Mutation p.K1042N 0.30 deleterious(0.04) benign(0.115) TCGA-FR-A726-01 10 105953688 105953688 C T WDR96 Missense_Mutation p.D460N 0.34 tolerated(0.46) benign(0.001) TCGA-FR-A726-01 10 106918652 106918652 C T SORCS3 Silent p.P544P 0.31 TCGA-FR-A726-01 10 106974335 106974335 G A SORCS3 Silent p.Q837Q 0.34 TCGA-FR-A726-01 10 106976717 106976717 C T SORCS3 Silent p.I857I 0.32 TCGA-FR-A726-01 10 107022186 107022186 A T SORCS3 Missense_Mutation p.T1181S 0.11 tolerated_low_confidence(0.34) benign(0.013) TCGA-FR-A726-01 10 108380188 108380188 C T SORCS1 Missense_Mutation p.E932K 0.30 tolerated(0.47) benign(0.052) TCGA-FR-A726-01 10 111643893 111643893 G A XPNPEP1 Silent p.L254L 0.30 TCGA-FR-A726-01 10 11363282 11363282 C T CELF2 Silent p.A409A 0.37 TCGA-FR-A726-01 10 114164309 114164309 C T ACSL5 Silent p.P158P 0.31 TCGA-FR-A726-01 10 114187117 114187117 G A ACSL5 3'UTR 0.28 TCGA-FR-A726-01 10 115348597 115348597 G A NRAP 3'UTR 0.32 TCGA-FR-A726-01 10 115349433 115349433 C T NRAP Missense_Mutation p.G1694R 0.07 tolerated_low_confidence(0.21) benign(0.013) TCGA-FR-A726-01 10 115375576 115375576 C T NRAP Splice_Site p.X992_splice 0.26 TCGA-FR-A726-01 10 115384623 115384623 A T NRAP Missense_Mutation p.F771I 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-FR-A726-01 10 115391294 115391294 G A NRAP Silent p.L606L 0.33 TCGA-FR-A726-01 10 115423599 115423599 G A NRAP Missense_Mutation p.P15S 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.458) TCGA-FR-A726-01 10 115527194 115527194 C T PLEKHS1 Silent p.S99S 0.34 TCGA-FR-A726-01 10 115540387 115540387 C T PLEKHS1 3'Flank 0.24 TCGA-FR-A726-01 10 115947765 115947765 G A TDRD1 Missense_Mutation p.E59K 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-FR-A726-01 10 115970643 115970643 C T TDRD1 Missense_Mutation p.S526F 0.42 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 10 115978283 115978283 C T TDRD1 Nonsense_Mutation p.R812* 0.28 TCGA-FR-A726-01 10 116196121 116196121 G A ABLIM1 Silent p.A745A 0.31 TCGA-FR-A726-01 10 117849293 117849293 C T GFRA1 Missense_Mutation p.E386K 0.34 tolerated(0.66) benign(0.116) TCGA-FR-A726-01 10 11797432 11797432 C T ECHDC3 Missense_Mutation p.P139L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 10 118314941 118314941 C T PNLIP Missense_Mutation p.P245S 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 118360608 118360608 C T PNLIPRP1 Nonsense_Mutation p.Q320* 0.31 TCGA-FR-A726-01 10 118390796 118390796 G A PNLIPRP2 Missense_Mutation p.G249R 0.86 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 118969155 118969155 G A KCNK18 Missense_Mutation p.R167Q 0.31 tolerated(0.27) benign(0.005) TCGA-FR-A726-01 10 118969168 118969168 C A KCNK18 Missense_Mutation p.F171L 0.28 tolerated(0.49) benign(0.002) TCGA-FR-A726-01 10 119003771 119003771 G A SLC18A2 Silent p.S137S 0.20 TCGA-FR-A726-01 10 119029946 119029946 G A SLC18A2 Missense_Mutation p.R471Q 0.33 deleterious(0.02) possibly_damaging(0.474) TCGA-FR-A726-01 10 11978663 11978663 G A UPF2 Missense_Mutation p.P1143S 0.22 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 10 120796713 120796713 G A EIF3A Silent p.D1279D 0.33 TCGA-FR-A726-01 10 120877128 120877128 C T FAM45A Missense_Mutation p.L144F 0.36 tolerated(0.21) benign(0.01) TCGA-FR-A726-01 10 121156240 121156240 G A GRK5 Missense_Mutation p.G99R 0.07 tolerated(0.76) benign(0.023) TCGA-FR-A726-01 10 121436464 121436464 T C BAG3 Silent p.D466D 0.35 TCGA-FR-A726-01 10 12160870 12160870 C T DHTKD1 Missense_Mutation p.P842L 0.34 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 10 12198941 12198941 C T SEC61A2 Missense_Mutation p.H218Y 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 10 12238138 12238138 G A CDC123 5'UTR 0.41 TCGA-FR-A726-01 10 122622393 122622393 C T WDR11 Silent p.L225L 0.30 TCGA-FR-A726-01 10 123244973 123244973 C T FGFR2 Missense_Mutation p.E712K 0.33 tolerated(0.16) benign(0.387) TCGA-FR-A726-01 10 123843008 123843008 G A TACC2 Silent p.E331E 0.35 TCGA-FR-A726-01 10 123845956 123845956 C T TACC2 Missense_Mutation p.P1314L 0.29 probably_damaging(0.92) TCGA-FR-A726-01 10 123846951 123846951 G A TACC2 Missense_Mutation p.A1646T 0.26 possibly_damaging(0.656) TCGA-FR-A726-01 10 123848075 123848075 G A TACC2 Missense_Mutation p.D1848N 0.35 benign(0.218) TCGA-FR-A726-01 10 123903214 123903214 C T TACC2 Missense_Mutation p.L1943F 0.32 benign(0.04) TCGA-FR-A726-01 10 123970914 123970914 C T TACC2 Missense_Mutation p.P2325L 0.05 probably_damaging(0.986) TCGA-FR-A726-01 10 123987394 123987394 G A TACC2 Silent p.A2589A 0.31 TCGA-FR-A726-01 10 124008568 124008568 G A TACC2 Missense_Mutation p.E2853K 0.17 probably_damaging(1) TCGA-FR-A726-01 10 124043430 124043430 G A BTBD16 Missense_Mutation p.G78R 0.29 tolerated(0.6) benign(0.021) TCGA-FR-A726-01 10 124045742 124045742 G A BTBD16 Missense_Mutation p.E122K 0.38 tolerated(0.15) possibly_damaging(0.702) TCGA-FR-A726-01 10 124090695 124090695 G A BTBD16 Silent p.K336K 0.26 TCGA-FR-A726-01 10 124096155 124096155 C T BTBD16 Silent p.I470I 0.34 TCGA-FR-A726-01 10 124096184 124096184 C T BTBD16 Missense_Mutation p.S480F 0.35 tolerated(0.08) benign(0.067) TCGA-FR-A726-01 10 124249127 124249127 C T HTRA1 Silent p.I254I 0.27 TCGA-FR-A726-01 10 124336159 124336159 C T DMBT1 Silent p.S176S 0.35 TCGA-FR-A726-01 10 124336176 124336176 C T DMBT1 Missense_Mutation p.P182L 0.26 tolerated(0.18) probably_damaging(1) TCGA-FR-A726-01 10 124338233 124338233 G A DMBT1 Splice_Site p.X213_splice 0.41 TCGA-FR-A726-01 10 124339393 124339393 G A DMBT1 Missense_Mutation p.E327K 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 10 124392716 124392716 C T DMBT1 Missense_Mutation p.S2007F 0.34 tolerated(0.07) possibly_damaging(0.862) TCGA-FR-A726-01 10 124396763 124396763 C T DMBT1 Missense_Mutation p.P2164S 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A726-01 10 124399589 124399589 C T DMBT1 Missense_Mutation p.L2197F 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A726-01 10 124457470 124457470 G A C10orf120 Missense_Mutation p.R263C 0.67 tolerated(0.16) benign(0.007) TCGA-FR-A726-01 10 124596487 124596487 C T CUZD1 Missense_Mutation p.G226E 0.31 tolerated(0.06) benign(0.119) TCGA-FR-A726-01 10 124596536 124596536 C T CUZD1 Missense_Mutation p.D210N 0.45 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 10 124605439 124605439 G A CUZD1 5'UTR 0.21 TCGA-FR-A726-01 10 124609981 124609981 A T FAM24B Silent p.V17V 0.28 TCGA-FR-A726-01 10 124810603 124810603 G A ACADSB Silent p.L343L 0.33 TCGA-FR-A726-01 10 125514227 125514227 G A CPXM2 Missense_Mutation p.P657S 0.26 tolerated(0.09) benign(0.065) TCGA-FR-A726-01 10 125601992 125601992 C T CPXM2 Missense_Mutation p.E176K 0.34 deleterious(0) possibly_damaging(0.844) TCGA-FR-A726-01 10 125805500 125805500 C T CHST15 Missense_Mutation p.G77R 0.35 tolerated(0.3) benign(0.442) TCGA-FR-A726-01 10 127424307 127424307 C T EDRF1 Missense_Mutation p.S531F 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 10 127555725 127555725 G A DHX32 Missense_Mutation p.L104F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 10 127697982 127697982 G A FANK1 Missense_Mutation p.R338K 0.29 tolerated_low_confidence(0.87) benign(0.008) TCGA-FR-A726-01 10 127755363 127755363 G A ADAM12 Missense_Mutation p.R449C 0.34 deleterious(0) possibly_damaging(0.773) TCGA-FR-A726-01 10 1279764 1279764 C T ADARB2 Missense_Mutation p.R462Q 0.35 tolerated(0.67) benign(0.024) TCGA-FR-A726-01 10 128841336 128841336 C T DOCK1 Silent p.I682I 0.30 TCGA-FR-A726-01 10 128973999 128973999 C T FAM196A Missense_Mutation p.D221N 0.35 tolerated(0.13) benign(0.006) TCGA-FR-A726-01 10 128974333 128974333 G A FAM196A Silent p.P109P 0.34 TCGA-FR-A726-01 10 128974334 128974334 G A FAM196A Missense_Mutation p.P109L 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 129861438 129861438 G A PTPRE Silent p.R239R 0.24 TCGA-FR-A726-01 10 129868615 129868615 G A PTPRE Silent p.G398G 0.36 TCGA-FR-A726-01 10 129913966 129913966 G A MKI67 Missense_Mutation p.P236S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 10 131640397 131640397 G A EBF3 Missense_Mutation p.S443L 0.33 deleterious_low_confidence(0.03) benign(0.022) TCGA-FR-A726-01 10 13228185 13228185 C T MCM10 Missense_Mutation p.P375S 0.10 deleterious(0.02) possibly_damaging(0.447) TCGA-FR-A726-01 10 13230994 13230994 C T MCM10 Silent p.A444A 0.35 TCGA-FR-A726-01 10 132932700 132932700 C T TCERG1L Missense_Mutation p.D401N 0.36 tolerated(0.11) possibly_damaging(0.647) TCGA-FR-A726-01 10 133107523 133107523 G A TCERG1L Missense_Mutation p.P128S 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 10 134017392 134017392 C T DPYSL4 Missense_Mutation p.P530S 0.06 tolerated(0.1) benign(0.017) TCGA-FR-A726-01 10 134151181 134151181 C A LRRC27 Missense_Mutation p.S108Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 10 134261607 134261607 G A C10orf91 3'UTR 0.43 TCGA-FR-A726-01 10 134622148 134622148 G A TTC40 Missense_Mutation p.A2642V 0.24 tolerated_low_confidence(0.22) possibly_damaging(0.682) TCGA-FR-A726-01 10 134628347 134628347 C T TTC40 Splice_Site p.X2396_splice 0.31 TCGA-FR-A726-01 10 134743238 134743238 G A TTC40 Missense_Mutation p.L313F 0.36 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 10 134885528 134885528 G A GPR123 Missense_Mutation p.R96K 0.24 deleterious_low_confidence(0) benign(0.14) TCGA-FR-A726-01 10 135011895 135011895 C T KNDC1 Missense_Mutation p.P654L 0.46 deleterious(0) benign(0.059) TCGA-FR-A726-01 10 135107097 135107097 G A TUBGCP2 Missense_Mutation p.P293S 0.55 deleterious(0.01) probably_damaging(0.95) TCGA-FR-A726-01 10 135202527 135202527 G A PAOX Missense_Mutation p.E397K 0.31 deleterious(0.05) benign(0.381) TCGA-FR-A726-01 10 135205030 135205030 C T PAOX 3'UTR 0.33 TCGA-FR-A726-01 10 13522953 13522953 C T BEND7 Missense_Mutation p.G285R 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A726-01 10 13523066 13523066 G A BEND7 Missense_Mutation p.S247F 0.27 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-FR-A726-01 10 13541750 13541750 C T BEND7 Intron 0.26 TCGA-FR-A726-01 10 15115274 15115274 C A OLAH 3'UTR 0.36 TCGA-FR-A726-01 10 15290666 15290666 G A FAM171A1 Silent p.V242V 0.31 TCGA-FR-A726-01 10 15628582 15628582 C T ITGA8 Splice_Site p.X791_splice 0.22 TCGA-FR-A726-01 10 15634299 15634299 G A ITGA8 Missense_Mutation p.S739F 0.31 tolerated(0.71) benign(0.169) TCGA-FR-A726-01 10 15646221 15646221 C T ITGA8 Missense_Mutation p.E702K 0.32 tolerated(0.59) possibly_damaging(0.514) TCGA-FR-A726-01 10 15686085 15686085 G A ITGA8 Missense_Mutation p.S448F 0.27 deleterious(0.03) possibly_damaging(0.786) TCGA-FR-A726-01 10 15838144 15838144 G A FAM188A Missense_Mutation p.P304S 0.33 deleterious(0.03) probably_damaging(0.92) TCGA-FR-A726-01 10 16877070 16877070 G A CUBN Silent p.L3435L 0.29 TCGA-FR-A726-01 10 16893235 16893235 T G CUBN Missense_Mutation p.K3221T 0.25 tolerated(0.08) benign(0.259) TCGA-FR-A726-01 10 16911788 16911788 C T CUBN Missense_Mutation p.G3101S 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 18250641 18250641 A G SLC39A12 Silent p.S131S 0.36 TCGA-FR-A726-01 10 18254443 18254443 C T SLC39A12 Missense_Mutation p.S192F 0.37 tolerated(0.16) benign(0.033) TCGA-FR-A726-01 10 18266997 18266997 G A SLC39A12 Nonsense_Mutation p.W306* 0.36 TCGA-FR-A726-01 10 18289689 18289689 C T SLC39A12 Missense_Mutation p.S565L 0.31 deleterious(0.01) possibly_damaging(0.861) TCGA-FR-A726-01 10 20508005 20508005 T A PLXDC2 Missense_Mutation p.I429K 0.29 deleterious(0.03) probably_damaging(0.926) TCGA-FR-A726-01 10 21074660 21074660 G A NEBL 3'UTR 0.31 TCGA-FR-A726-01 10 21098790 21098790 G A NEBL Silent p.F852F 0.30 TCGA-FR-A726-01 10 21462843 21462843 C T NEBL-AS1 5'Flank 0.41 TCGA-FR-A726-01 10 22653900 22653900 G A SPAG6 Silent p.V80V 0.43 TCGA-FR-A726-01 10 22653932 22653932 C T SPAG6 Missense_Mutation p.S91L 0.27 deleterious(0.02) benign(0.109) TCGA-FR-A726-01 10 22676833 22676833 C T SPAG6 Missense_Mutation p.P254S 0.36 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 10 24669980 24669980 G A KIAA1217 Silent p.T179T 0.31 TCGA-FR-A726-01 10 24813270 24813270 C T KIAA1217 Silent p.L825L 0.29 TCGA-FR-A726-01 10 24820801 24820801 G A KIAA1217 Missense_Mutation p.G1042E 0.40 tolerated(0.1) probably_damaging(0.945) TCGA-FR-A726-01 10 24822115 24822115 G A KIAA1217 Silent p.K1121K 0.25 TCGA-FR-A726-01 10 24822116 24822116 G A KIAA1217 Missense_Mutation p.D1122N 0.26 deleterious(0.05) benign(0.199) TCGA-FR-A726-01 10 24825769 24825769 A C KIAA1217 Missense_Mutation p.S1161R 0.34 tolerated(0.15) possibly_damaging(0.868) TCGA-FR-A726-01 10 24831651 24831651 G A KIAA1217 Silent p.R1188R 0.30 TCGA-FR-A726-01 10 24880874 24880874 G A ARHGAP21 Missense_Mutation p.T1315I 0.10 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 10 25312811 25312811 T A THNSL1 Missense_Mutation p.I220N 0.35 deleterious(0) possibly_damaging(0.724) TCGA-FR-A726-01 10 25313988 25313988 G A THNSL1 Silent p.Q612Q 0.24 TCGA-FR-A726-01 10 26243877 26243877 C T MYO3A Silent p.F81F 0.33 TCGA-FR-A726-01 10 26310678 26310678 C T MYO3A Intron 0.26 TCGA-FR-A726-01 10 26359110 26359110 G A MYO3A Missense_Mutation p.G414E 0.33 deleterious(0) possibly_damaging(0.698) TCGA-FR-A726-01 10 26459433 26459433 G A MYO3A Silent p.Q1121Q 0.30 TCGA-FR-A726-01 10 26500924 26500924 G A MYO3A 3'UTR 0.50 TCGA-FR-A726-01 10 26589991 26589991 C T GAD2 3'UTR 0.39 TCGA-FR-A726-01 10 26790008 26790008 C T APBB1IP Silent p.L141L 0.35 TCGA-FR-A726-01 10 26880331 26880331 G A LINC00264 RNA 0.33 TCGA-FR-A726-01 10 26939679 26939679 G A LINC00202-2 RNA 0.24 TCGA-FR-A726-01 10 26942048 26942048 C A LINC00202-2 RNA 0.38 TCGA-FR-A726-01 10 27702119 27702119 T C PTCHD3 Missense_Mutation p.K354R 0.34 tolerated(0.47) benign(0.185) TCGA-FR-A726-01 10 28024273 28024273 G A MKX Missense_Mutation p.R127W 0.28 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 10 28030370 28030370 G A MKX Silent p.P84P 0.33 TCGA-FR-A726-01 10 28101323 28101323 C T ARMC4 3'UTR 0.43 TCGA-FR-A726-01 10 28260242 28260242 C T ARMC4 Missense_Mutation p.G313R 0.09 tolerated(0.24) benign(0.066) TCGA-FR-A726-01 10 28283875 28283875 G A ARMC4 Missense_Mutation p.S66L 0.34 deleterious(0.01) benign(0.078) TCGA-FR-A726-01 10 28409268 28409268 G A MPP7 Missense_Mutation p.P248S 0.22 deleterious(0) probably_damaging(0.975) TCGA-FR-A726-01 10 28527587 28527587 G A MPP7 5'UTR 0.31 TCGA-FR-A726-01 10 29578107 29578107 G A LYZL1 Missense_Mutation p.D21N 0.12 tolerated_low_confidence(0.35) benign(0.065) TCGA-FR-A726-01 10 29839764 29839764 C T SVIL Missense_Mutation p.E197K 0.28 deleterious(0.01) possibly_damaging(0.721) TCGA-FR-A726-01 10 29843806 29843806 G A SVIL Silent p.L22L 0.29 TCGA-FR-A726-01 10 30315686 30315686 G A KIAA1462 Missense_Mutation p.R1131C 0.35 deleterious(0.01) benign(0.429) TCGA-FR-A726-01 10 30316266 30316266 C T KIAA1462 Silent p.V937V 0.34 TCGA-FR-A726-01 10 30317571 30317571 G A KIAA1462 Silent p.G502G 0.29 TCGA-FR-A726-01 10 30318556 30318556 C T KIAA1462 Missense_Mutation p.R174Q 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-FR-A726-01 10 30653873 30653873 G A AL161651.1 3'Flank 0.31 TCGA-FR-A726-01 10 30748208 30748208 G A MAP3K8 Missense_Mutation p.E351K 0.26 deleterious(0.02) possibly_damaging(0.669) TCGA-FR-A726-01 10 3155622 3155622 C T PFKP Missense_Mutation p.A428V 0.35 deleterious(0.04) possibly_damaging(0.609) TCGA-FR-A726-01 10 31750013 31750013 G A ZEB1 Missense_Mutation p.E36K 0.21 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 10 31791344 31791344 C T ZEB1 Silent p.L131L 0.21 TCGA-FR-A726-01 10 31809818 31809818 G A ZEB1 Missense_Mutation p.D520N 0.33 tolerated(0.1) benign(0.423) TCGA-FR-A726-01 10 31815797 31815797 G A ZEB1 Missense_Mutation p.D995N 0.31 tolerated(0.05) possibly_damaging(0.479) TCGA-FR-A726-01 10 31815986 31815986 G A ZEB1 Missense_Mutation p.E1058K 0.41 tolerated_low_confidence(0.31) benign(0) TCGA-FR-A726-01 10 3202097 3202097 G A PITRM1 Missense_Mutation p.S317L 0.25 tolerated(0.08) benign(0.024) TCGA-FR-A726-01 10 32197241 32197241 G A ARHGAP12 Silent p.P181P 0.26 TCGA-FR-A726-01 10 32197242 32197242 G A ARHGAP12 Missense_Mutation p.P181L 0.26 deleterious(0.02) benign(0.002) TCGA-FR-A726-01 10 32573765 32573765 G A EPC1 Silent p.S535S 0.05 TCGA-FR-A726-01 10 32978076 32978076 G A C10ORF68 Missense_Mutation p.G84R 0.28 tolerated(0.37) probably_damaging(0.994) TCGA-FR-A726-01 10 34649094 34649094 G A PARD3 Missense_Mutation p.L601F 0.34 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 10 355996 355996 C T DIP2C Missense_Mutation p.D1321N 0.33 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 10 35818911 35818911 G A CCNY Missense_Mutation p.G138R 0.36 tolerated(1) probably_damaging(1) TCGA-FR-A726-01 10 37421200 37421200 G A ANKRD30A Silent p.T125T 0.34 TCGA-FR-A726-01 10 37421222 37421222 G A ANKRD30A Missense_Mutation p.E133K 0.25 deleterious(0.01) possibly_damaging(0.874) TCGA-FR-A726-01 10 37505198 37505198 G A ANKRD30A Missense_Mutation p.G931R 0.29 tolerated(0.43) benign(0.198) TCGA-FR-A726-01 10 37508823 37508823 G A ANKRD30A Missense_Mutation p.E1339K 0.38 deleterious(0) possibly_damaging(0.636) TCGA-FR-A726-01 10 38246405 38246405 G A ZNF25 Nonsense_Mutation p.Q29* 0.25 TCGA-FR-A726-01 10 38305852 38305852 C T ZNF33A Silent p.F21F 0.30 TCGA-FR-A726-01 10 42947107 42947107 G A CCNYL2 RNA 0.26 TCGA-FR-A726-01 10 43015811 43015811 G A ZNF37BP RNA 0.27 TCGA-FR-A726-01 10 43622127 43622127 C T RET Silent p.L1048L 0.46 TCGA-FR-A726-01 10 43622128 43622128 C T RET Missense_Mutation p.P1049S 0.45 tolerated_low_confidence(0.06) benign(0.027) TCGA-FR-A726-01 10 44052973 44052973 C T ZNF239 Silent p.G185G 0.08 TCGA-FR-A726-01 10 44053217 44053217 C T ZNF239 Missense_Mutation p.R104K 0.36 tolerated(0.24) benign(0.003) TCGA-FR-A726-01 10 44871449 44871449 C T CXCL12 3'Flank 0.25 TCGA-FR-A726-01 10 44874042 44874042 C T CXCL12 Intron 0.45 TCGA-FR-A726-01 10 45652498 45652498 G A RP11-445N18.7 RNA 0.33 TCGA-FR-A726-01 10 45799101 45799101 G A OR13A1 Missense_Mutation p.S257F 0.08 deleterious(0.01) possibly_damaging(0.831) TCGA-FR-A726-01 10 45799659 45799659 G A OR13A1 Missense_Mutation p.P71L 0.47 tolerated(0.07) benign(0.013) TCGA-FR-A726-01 10 45959713 45959713 G A MARCH8 Silent p.I72I 0.24 TCGA-FR-A726-01 10 465059 465059 C T DIP2C Missense_Mutation p.G229R 0.09 tolerated(0.63) benign(0) TCGA-FR-A726-01 10 46967720 46967720 T C SYT15 Silent p.G119G 0.12 TCGA-FR-A726-01 10 48370463 48370463 G A ZNF488 5'UTR 0.41 TCGA-FR-A726-01 10 48370734 48370734 G A ZNF488 Missense_Mutation p.D68N 0.35 deleterious(0.01) possibly_damaging(0.597) TCGA-FR-A726-01 10 48387854 48387854 C T RBP3 Silent p.K1008K 0.30 TCGA-FR-A726-01 10 48388921 48388921 G A RBP3 Missense_Mutation p.R653W 0.24 deleterious(0.03) possibly_damaging(0.689) TCGA-FR-A726-01 10 48389216 48389216 G A RBP3 Silent p.F554F 0.23 TCGA-FR-A726-01 10 48414498 48414498 C T GDF2 Missense_Mutation p.E124K 0.29 tolerated(0.23) benign(0.023) TCGA-FR-A726-01 10 48429087 48429087 C T GDF10 Missense_Mutation p.D267N 0.55 tolerated(0.14) probably_damaging(0.998) TCGA-FR-A726-01 10 48429259 48429259 G A GDF10 Silent p.I209I 0.31 TCGA-FR-A726-01 10 49371576 49371576 C T FRMPD2 Missense_Mutation p.E1226K 0.26 deleterious(0.05) probably_damaging(0.996) TCGA-FR-A726-01 10 49381018 49381018 C T FRMPD2 Missense_Mutation p.R1065K 0.24 tolerated(0.3) possibly_damaging(0.708) TCGA-FR-A726-01 10 49791178 49791178 C T ARHGAP22 Silent p.V18V 0.35 TCGA-FR-A726-01 10 50121722 50121722 G A LRRC18 Missense_Mutation p.P160L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 10 50122135 50122135 G A LRRC18 Silent p.I22I 0.30 TCGA-FR-A726-01 10 50315833 50315833 C A VSTM4 Missense_Mutation p.G88V 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 50315834 50315834 C T VSTM4 Missense_Mutation p.G88R 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 50315896 50315896 G A VSTM4 Missense_Mutation p.S67F 0.20 deleterious(0.05) possibly_damaging(0.567) TCGA-FR-A726-01 10 50396379 50396379 C T C10orf128 Translation_Start_Site p.M1? 0.20 tolerated_low_confidence(0.09) benign(0.216) TCGA-FR-A726-01 10 50531263 50531263 C T C10orf71 Missense_Mutation p.P225S 0.40 tolerated(0.46) possibly_damaging(0.527) TCGA-FR-A726-01 10 50678864 50678864 G A ERCC6 Missense_Mutation p.H1048Y 0.35 tolerated(0.61) benign(0.11) TCGA-FR-A726-01 10 50820335 50820335 C T SLC18A3 Missense_Mutation p.P517S 0.26 tolerated(0.29) benign(0.01) TCGA-FR-A726-01 10 50870784 50870784 G A CHAT Missense_Mutation p.E645K 0.24 tolerated(0.24) possibly_damaging(0.545) TCGA-FR-A726-01 10 50902059 50902059 G A C10orf53 Intron 0.35 TCGA-FR-A726-01 10 50946010 50946010 G A OGDHL Silent p.L834L 0.30 TCGA-FR-A726-01 10 51464766 51464766 G A AGAP7 Silent p.L564L 0.14 TCGA-FR-A726-01 10 51465556 51465556 C T AGAP7 Missense_Mutation p.M300I 0.31 tolerated(0.1) benign(0.173) TCGA-FR-A726-01 10 52066863 52066863 A C SGMS1 3'UTR 0.41 TCGA-FR-A726-01 10 52071133 52071133 G A SGMS1 Missense_Mutation p.L262F 0.37 deleterious(0.01) possibly_damaging(0.891) TCGA-FR-A726-01 10 52103530 52103530 C T SGMS1 Missense_Mutation p.M115I 0.29 tolerated(0.45) benign(0.065) TCGA-FR-A726-01 10 5227087 5227087 C T AKR1CL1 5'UTR 0.24 TCGA-FR-A726-01 10 52389895 52389895 C T RP11-50E11.3 RNA 0.41 TCGA-FR-A726-01 10 5248240 5248240 C T AKR1C4 Silent p.V150V 0.32 TCGA-FR-A726-01 10 52575824 52575824 G A A1CF Silent p.F369F 0.40 TCGA-FR-A726-01 10 52580350 52580350 C T A1CF Missense_Mutation p.E285K 0.39 deleterious(0.02) benign(0.197) TCGA-FR-A726-01 10 52603789 52603789 G A A1CF Nonsense_Mutation p.R73* 0.23 TCGA-FR-A726-01 10 52603821 52603821 C T A1CF Missense_Mutation p.R62K 0.43 tolerated(0.17) probably_damaging(0.995) TCGA-FR-A726-01 10 54011354 54011354 C T PRKG1 Silent p.F367F 0.38 TCGA-FR-A726-01 10 54048536 54048536 G A PRKG1 Missense_Mutation p.R587K 0.24 tolerated(1) benign(0.003) TCGA-FR-A726-01 10 5436272 5436272 C T TUBAL3 Silent p.R183R 0.34 TCGA-FR-A726-01 10 5443049 5443049 C T TUBAL3 Missense_Mutation p.R2K 0.38 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-FR-A726-01 10 55570383 55570383 G A PCDH15 Missense_Mutation p.P1479L 0.08 benign(0.001) TCGA-FR-A726-01 10 55582058 55582058 G A PCDH15 Missense_Mutation p.L1812F 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-FR-A726-01 10 55591097 55591097 C T PCDH15 Missense_Mutation p.V1394M 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-FR-A726-01 10 55600246 55600246 G A PCDH15 Missense_Mutation p.R1273C 0.32 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 10 55626567 55626567 T A PCDH15 Silent p.I1184I 0.18 TCGA-FR-A726-01 10 56106166 56106166 C T PCDH15 Missense_Mutation p.G185R 0.41 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 10 56128953 56128953 C T PCDH15 Missense_Mutation p.R134Q 0.27 tolerated(0.17) probably_damaging(0.963) TCGA-FR-A726-01 10 5788551 5788551 T A FAM208B Missense_Mutation p.F1056Y 0.22 tolerated(0.08) probably_damaging(0.95) TCGA-FR-A726-01 10 5789017 5789017 C T FAM208B Silent p.A1211A 0.25 TCGA-FR-A726-01 10 5842579 5842579 A G GDI2 Silent p.S45S 0.32 TCGA-FR-A726-01 10 5995170 5995170 C T IL15RA Splice_Site p.X231_splice 0.24 TCGA-FR-A726-01 10 60580162 60580162 C T BICC1 Nonsense_Mutation p.Q910* 0.08 TCGA-FR-A726-01 10 6063639 6063639 G A IL2RA Missense_Mutation p.P129S 0.31 tolerated(0.05) probably_damaging(0.984) TCGA-FR-A726-01 10 61005234 61005234 G A PHYHIPL Silent p.V338V 0.40 TCGA-FR-A726-01 10 61011194 61011194 G A FAM13C Intron 0.32 TCGA-FR-A726-01 10 61443964 61443964 G A SLC16A9 Missense_Mutation p.S29F 0.27 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 10 61828457 61828457 G T ANK3 Missense_Mutation p.A4061E 0.33 benign(0.326) TCGA-FR-A726-01 10 61829005 61829005 C T ANK3 Silent p.P3878P 0.29 TCGA-FR-A726-01 10 61829043 61829043 G A ANK3 Missense_Mutation p.P3866S 0.32 probably_damaging(0.992) TCGA-FR-A726-01 10 61830966 61830966 C T ANK3 Missense_Mutation p.E3225K 0.29 benign(0.003) TCGA-FR-A726-01 10 61831458 61831458 G A ANK3 Missense_Mutation p.P3061S 0.36 probably_damaging(0.992) TCGA-FR-A726-01 10 61834521 61834521 C T ANK3 Missense_Mutation p.D2040N 0.33 probably_damaging(0.977) TCGA-FR-A726-01 10 61835162 61835162 G A ANK3 Missense_Mutation p.S1826F 0.30 probably_damaging(0.979) TCGA-FR-A726-01 10 61868627 61868627 C T ANK3 Missense_Mutation p.R1045K 0.32 possibly_damaging(0.623) TCGA-FR-A726-01 10 61868749 61868749 C T ANK3 Silent p.G1004G 0.34 TCGA-FR-A726-01 10 61956380 61956380 C T ANK3 Missense_Mutation p.G565R 0.29 probably_damaging(1) TCGA-FR-A726-01 10 62149262 62149262 C T ANK3 Missense_Mutation p.R12K 0.27 benign(0.124) TCGA-FR-A726-01 10 63450332 63450332 G A C10orf107 Missense_Mutation p.E81K 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-FR-A726-01 10 64159341 64159341 C T ZNF365 Intron 0.40 TCGA-FR-A726-01 10 64414640 64414640 C T ZNF365 Intron 0.27 TCGA-FR-A726-01 10 64960288 64960288 C T JMJD1C Missense_Mutation p.G1742R 0.41 deleterious(0.05) possibly_damaging(0.796) TCGA-FR-A726-01 10 64974085 64974085 A G JMJD1C Silent p.H614H 0.36 TCGA-FR-A726-01 10 68687240 68687240 G A LRRTM3 Missense_Mutation p.G189E 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 68940226 68940226 G A CTNNA3 Missense_Mutation p.S299L 0.30 tolerated(0.17) benign(0.444) TCGA-FR-A726-01 10 69881606 69881606 G A MYPN Silent p.R137R 0.36 TCGA-FR-A726-01 10 69881830 69881830 C T MYPN Missense_Mutation p.P212L 0.28 tolerated(0.06) benign(0.001) TCGA-FR-A726-01 10 69921518 69921518 G A MYPN Intron 0.38 TCGA-FR-A726-01 10 70332365 70332365 T A TET1 Silent p.L90L 0.35 TCGA-FR-A726-01 10 71025383 71025383 G A HKDC1 Silent p.Q805Q 0.21 TCGA-FR-A726-01 10 71025384 71025384 C G HKDC1 Missense_Mutation p.L806V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 10 71562447 71562447 G A COL13A1 Missense_Mutation p.G90R 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FR-A726-01 10 71665563 71665563 C T COL13A1 Silent p.G312G 0.27 TCGA-FR-A726-01 10 71883673 71883673 G T AIFM2 Silent p.S56S 0.25 TCGA-FR-A726-01 10 72025832 72025832 C T NPFFR1 Splice_Site p.X108_splice 0.25 TCGA-FR-A726-01 10 72025833 72025833 C T NPFFR1 Missense_Mutation p.G108R 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 10 72358892 72358892 C T PRF1 Silent p.R195R 0.22 TCGA-FR-A726-01 10 72434746 72434746 G A ADAMTS14 Missense_Mutation p.G173R 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 72531130 72531130 C T TBATA 3'UTR 0.30 TCGA-FR-A726-01 10 72538357 72538357 G A TBATA Missense_Mutation p.R155W 0.28 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 10 7262467 7262467 C T SFMBT2 Missense_Mutation p.M412I 0.33 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 10 73453908 73453908 A G CDH23 Silent p.E319E 0.37 TCGA-FR-A726-01 10 73462428 73462428 C T CDH23 Missense_Mutation p.P496S 0.30 tolerated(0.09) benign(0.074) TCGA-FR-A726-01 10 73472853 73472853 G A C10orf105 3'UTR 0.36 TCGA-FR-A726-01 10 73485248 73485248 G A CDH23 Missense_Mutation p.D1189N 0.42 deleterious(0.02) probably_damaging(0.982) TCGA-FR-A726-01 10 73510957 73510957 C T C10orf54 3'UTR 0.32 TCGA-FR-A726-01 10 73512747 73512747 A C C10orf54 Missense_Mutation p.L230R 0.20 deleterious(0.02) benign(0.013) TCGA-FR-A726-01 10 73521477 73521477 G A C10orf54 Missense_Mutation p.S130F 0.36 tolerated(0.31) possibly_damaging(0.642) TCGA-FR-A726-01 10 73560419 73560419 G A CDH23 Silent p.L223L 0.51 TCGA-FR-A726-01 10 73767166 73767166 C T CHST3 Missense_Mutation p.P126L 0.26 tolerated(0.65) benign(0.017) TCGA-FR-A726-01 10 73767340 73767340 C T CHST3 Missense_Mutation p.S184L 0.31 tolerated(0.34) benign(0.419) TCGA-FR-A726-01 10 74692188 74692188 G A OIT3 Missense_Mutation p.R515Q 0.41 tolerated(0.55) benign(0.029) TCGA-FR-A726-01 10 74692189 74692189 G A OIT3 Silent p.R515R 0.40 TCGA-FR-A726-01 10 74695198 74695198 C T PLA2G12B 3'UTR 0.33 TCGA-FR-A726-01 10 74790102 74790102 G A P4HA1 Missense_Mutation p.P392L 0.35 deleterious(0.03) benign(0.172) TCGA-FR-A726-01 10 74828606 74828606 G A P4HA1 Missense_Mutation p.P154L 0.26 tolerated(0.17) benign(0.327) TCGA-FR-A726-01 10 75072399 75072399 G A TTC18 Silent p.T375T 0.33 TCGA-FR-A726-01 10 75113328 75113328 T C TTC18 Missense_Mutation p.H79R 0.29 deleterious(0.04) probably_damaging(0.99) TCGA-FR-A726-01 10 75407213 75407213 C T SYNPO2L Missense_Mutation p.G733R 0.35 deleterious(0.02) possibly_damaging(0.526) TCGA-FR-A726-01 10 75542890 75542890 C T CHCHD1 Missense_Mutation p.P101L 0.31 deleterious(0) possibly_damaging(0.86) TCGA-FR-A726-01 10 75568189 75568189 G A NDST2 5'UTR 0.50 TCGA-FR-A726-01 10 75608304 75608304 G A CAMK2G Missense_Mutation p.P194L 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A726-01 10 75620596 75620596 G A CAMK2G Missense_Mutation p.P71L 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A726-01 10 7605261 7605261 C T ITIH5 Missense_Mutation p.G872R 0.17 tolerated(0.24) benign(0.211) TCGA-FR-A726-01 10 7605262 7605262 C T ITIH5 Silent p.V871V 0.17 TCGA-FR-A726-01 10 7618458 7618458 C T ITIH5 Missense_Mutation p.E646K 0.40 tolerated(0.39) benign(0.071) TCGA-FR-A726-01 10 7621747 7621747 C T ITIH5 Silent p.E463E 0.38 TCGA-FR-A726-01 10 7627961 7627961 G A ITIH5 Silent p.S337S 0.33 TCGA-FR-A726-01 10 76602947 76602947 T C KAT6B Missense_Mutation p.L111S 0.34 probably_damaging(0.937) TCGA-FR-A726-01 10 76735578 76735578 C T KAT6B Missense_Mutation p.P495S 0.37 benign(0.003) TCGA-FR-A726-01 10 76788421 76788421 C T KAT6B Missense_Mutation p.P1280L 0.11 probably_damaging(0.999) TCGA-FR-A726-01 10 76854505 76854505 G A DUSP13 Missense_Mutation p.P226S 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 10 77158926 77158926 G A ZNF503 Missense_Mutation p.P508S 0.22 tolerated(0.06) possibly_damaging(0.514) TCGA-FR-A726-01 10 78872173 78872173 G A KCNMA1 Silent p.L304L 0.27 TCGA-FR-A726-01 10 8055691 8055691 C T TAF3 Intron 0.33 TCGA-FR-A726-01 10 81371747 81371747 C T SFTPA1 Missense_Mutation p.P71S 0.30 deleterious(0.04) probably_damaging(0.984) TCGA-FR-A726-01 10 81702545 81702545 C T SFTPD Missense_Mutation p.G97E 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A726-01 10 81706265 81706265 C T SFTPD Missense_Mutation p.D51N 0.34 tolerated(0.08) probably_damaging(0.948) TCGA-FR-A726-01 10 81706268 81706268 G A SFTPD Missense_Mutation p.R50C 0.39 deleterious(0) probably_damaging(0.965) TCGA-FR-A726-01 10 82033472 82033472 C T MAT1A 3'UTR 0.34 TCGA-FR-A726-01 10 82095920 82095920 C T DYDC1 Missense_Mutation p.D176N 0.27 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-FR-A726-01 10 82098891 82098891 C T DYDC1 Missense_Mutation p.E121K 0.30 tolerated(0.16) benign(0.26) TCGA-FR-A726-01 10 82403850 82403850 C T SH2D4B 3'UTR 0.12 TCGA-FR-A726-01 10 85910627 85910627 C T GHITM Missense_Mutation p.P315L 0.26 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 10 85944436 85944436 G A C10orf99 Splice_Site p.X54_splice 0.28 TCGA-FR-A726-01 10 85981767 85981767 A C LRIT2 Missense_Mutation p.F521C 0.33 tolerated(0.05) benign(0.136) TCGA-FR-A726-01 10 85984601 85984601 G A LRIT2 Missense_Mutation p.P127L 0.29 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 10 85991800 85991800 C T LRIT1 Silent p.E585E 0.29 TCGA-FR-A726-01 10 85991857 85991857 C T LRIT1 Silent p.E566E 0.18 TCGA-FR-A726-01 10 87362379 87362379 G A GRID1 Missense_Mutation p.S894F 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-FR-A726-01 10 87373381 87373381 C T GRID1 Missense_Mutation p.G795E 0.36 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 10 87482774 87482774 C T GRID1 Missense_Mutation p.M661I 0.33 tolerated(0.37) probably_damaging(0.989) TCGA-FR-A726-01 10 87484341 87484341 C T GRID1 Silent p.G542G 0.36 TCGA-FR-A726-01 10 87614298 87614298 G A GRID1 Silent p.I396I 0.23 TCGA-FR-A726-01 10 87966213 87966213 G A GRID1 Missense_Mutation p.S143L 0.24 tolerated(0.34) benign(0.094) TCGA-FR-A726-01 10 88911163 88911163 C T FAM35A Silent p.L18L 0.34 TCGA-FR-A726-01 10 90034703 90034703 C T RNLS 3'UTR 0.29 TCGA-FR-A726-01 10 90354494 90354494 G A LIPJ Missense_Mutation p.E134K 0.39 tolerated(0.65) benign(0.015) TCGA-FR-A726-01 10 90435351 90435351 G A LIPF Silent p.L285L 0.41 TCGA-FR-A726-01 10 90537765 90537765 G A LIPN Splice_Site p.X322_splice 0.26 TCGA-FR-A726-01 10 90582616 90582616 G A ANKRD22 3'UTR 0.29 TCGA-FR-A726-01 10 90582617 90582617 G A ANKRD22 3'UTR 0.28 TCGA-FR-A726-01 10 90699426 90699426 C T ACTA2 Missense_Mutation p.E216K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-FR-A726-01 10 90733126 90733126 G A ACTA2 Intron 0.35 TCGA-FR-A726-01 10 91176983 91176983 G A IFIT5 Silent p.L9L 0.30 TCGA-FR-A726-01 10 91203595 91203595 C T SLC16A12 Silent p.V74V 0.28 TCGA-FR-A726-01 10 92502225 92502225 C T HTR7 3'UTR 0.35 TCGA-FR-A726-01 10 92677503 92677503 C T ANKRD1 Missense_Mutation p.E180K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 10 93220198 93220198 C T HECTD2 Missense_Mutation p.P95S 0.28 deleterious(0.03) benign(0.011) TCGA-FR-A726-01 10 93742443 93742443 C T BTAF1 Silent p.F716F 0.28 TCGA-FR-A726-01 10 94267901 94267901 G A IDE Silent p.I374I 0.28 TCGA-FR-A726-01 10 94835652 94835652 C T CYP26A1 Silent p.L312L 0.32 TCGA-FR-A726-01 10 95093027 95093027 C T MYOF Missense_Mutation p.E1588K 0.30 tolerated(0.19) possibly_damaging(0.595) TCGA-FR-A726-01 10 95103648 95103648 C T MYOF Missense_Mutation p.E1431K 0.39 deleterious(0.03) benign(0.21) TCGA-FR-A726-01 10 95111508 95111508 C T MYOF Missense_Mutation p.D1193N 0.33 tolerated(1) benign(0.01) TCGA-FR-A726-01 10 95126303 95126303 G A MYOF Nonsense_Mutation p.Q867* 0.31 TCGA-FR-A726-01 10 95347322 95347322 G A FFAR4 Missense_Mutation p.D364N 0.33 deleterious(0.01) benign(0.347) TCGA-FR-A726-01 10 95661277 95661277 C T SLC35G1 3'UTR 0.40 TCGA-FR-A726-01 10 95718663 95718663 C T PIPSL RNA 0.36 TCGA-FR-A726-01 10 95791419 95791419 G A PLCE1 Missense_Mutation p.E206K 0.29 tolerated_low_confidence(0.2) benign(0.001) TCGA-FR-A726-01 10 95791437 95791437 G A PLCE1 Missense_Mutation p.D212N 0.24 deleterious_low_confidence(0.02) benign(0.01) TCGA-FR-A726-01 10 95791456 95791456 C T PLCE1 Missense_Mutation p.P218L 0.26 deleterious_low_confidence(0.02) benign(0.021) TCGA-FR-A726-01 10 95791914 95791914 C T PLCE1 Missense_Mutation p.P371S 0.35 tolerated_low_confidence(0.57) benign(0.001) TCGA-FR-A726-01 10 96030328 96030328 C T PLCE1 Missense_Mutation p.P1492L 0.33 deleterious(0.03) possibly_damaging(0.496) TCGA-FR-A726-01 10 96068428 96068428 C T PLCE1 Missense_Mutation p.S1992F 0.27 tolerated(0.31) benign(0.24) TCGA-FR-A726-01 10 96443542 96443542 G A CYP2C18 5'UTR 0.30 TCGA-FR-A726-01 10 96443556 96443556 T C CYP2C18 5'UTR 0.27 TCGA-FR-A726-01 10 96535292 96535292 C T CYP2C19 Silent p.T159T 0.35 TCGA-FR-A726-01 10 96540335 96540335 C T CYP2C19 Silent p.F187F 0.37 TCGA-FR-A726-01 10 96708958 96708958 G A CYP2C9 Missense_Mutation p.E246K 0.33 tolerated(0.1) benign(0.137) TCGA-FR-A726-01 10 96741088 96741088 G A CYP2C9 Silent p.V370V 0.38 TCGA-FR-A726-01 10 96824560 96824560 G A CYP2C8 Silent p.I213I 0.30 TCGA-FR-A726-01 10 96827158 96827158 G A CYP2C8 Intron 0.29 TCGA-FR-A726-01 10 96827292 96827292 C T CYP2C8 Missense_Mutation p.G109R 0.34 deleterious(0.02) benign(0.435) TCGA-FR-A726-01 10 97023727 97023727 G A PDLIM1 Nonsense_Mutation p.Q143* 0.34 TCGA-FR-A726-01 10 97917242 97917242 C T ZNF518A RNA 0.32 TCGA-FR-A726-01 10 97964300 97964300 G A BLNK Missense_Mutation p.P297L 0.21 tolerated(0.08) benign(0.049) TCGA-FR-A726-01 10 97983587 97983587 C T BLNK Missense_Mutation p.D174N 0.35 deleterious(0.01) possibly_damaging(0.493) TCGA-FR-A726-01 10 98105551 98105551 G A OPALIN 3'UTR 0.25 TCGA-FR-A726-01 10 98170201 98170201 C T TLL2 Missense_Mutation p.G360E 0.21 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 10 98173072 98173072 C T TLL2 Missense_Mutation p.G309R 0.27 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 10 98386594 98386594 G A PIK3AP1 Missense_Mutation p.H514Y 0.41 tolerated(0.18) benign(0.013) TCGA-FR-A726-01 10 98405304 98405304 G A PIK3AP1 Missense_Mutation p.S434L 0.28 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 10 98405419 98405419 C T PIK3AP1 Missense_Mutation p.E396K 0.29 deleterious(0) possibly_damaging(0.821) TCGA-FR-A726-01 10 98802700 98802700 G A SLIT1 Missense_Mutation p.P708S 0.21 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 10 98816969 98816969 G A SLIT1 Silent p.L385L 0.25 TCGA-FR-A726-01 10 99126520 99126520 G A RRP12 Missense_Mutation p.P1065L 0.31 deleterious(0.02) benign(0) TCGA-FR-A726-01 10 99338044 99338044 C T ANKRD2 Silent p.I106I 0.35 TCGA-FR-A726-01 10 99379391 99379391 G A MORN4 Missense_Mutation p.S7F 0.31 deleterious(0.02) possibly_damaging(0.485) TCGA-FR-A726-01 10 99527510 99527510 C T SFRP5 Missense_Mutation p.D239N 0.37 deleterious(0.04) possibly_damaging(0.6) TCGA-FR-A726-01 10 99655110 99655110 C T CRTAC1 Missense_Mutation p.G460R 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 100912795 100912795 C T PGR Missense_Mutation p.E843K 0.55 deleterious(0.01) probably_damaging(0.981) TCGA-FR-A726-01 11 101342097 101342097 C T TRPC6 Nonsense_Mutation p.W742* 0.39 TCGA-FR-A726-01 11 101762064 101762064 C T ANGPTL5 Silent p.K371K 0.54 TCGA-FR-A726-01 11 102496053 102496053 C T MMP20 5'UTR 0.16 TCGA-FR-A726-01 11 102564722 102564722 G A MMP27 Missense_Mutation p.P370S 0.54 tolerated(0.08) benign(0.204) TCGA-FR-A726-01 11 102593330 102593330 G A MMP8 Silent p.I59I 0.12 TCGA-FR-A726-01 11 102663439 102663439 C T MMP1 Silent p.P310P 0.44 TCGA-FR-A726-01 11 102713442 102713442 G A MMP3 Missense_Mutation p.P104L 0.66 deleterious(0.01) benign(0.041) TCGA-FR-A726-01 11 102816431 102816431 A T MMP13 Missense_Mutation p.I420K 0.49 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 11 103057046 103057046 C T DYNC2H1 Nonsense_Mutation p.R2237* 0.53 TCGA-FR-A726-01 11 103908016 103908016 G A DDI1 Missense_Mutation p.D156N 0.49 tolerated(0.16) benign(0.044) TCGA-FR-A726-01 11 103908193 103908193 G A DDI1 Missense_Mutation p.E215K 0.12 tolerated(0.06) possibly_damaging(0.772) TCGA-FR-A726-01 11 104825664 104825664 A G CASP4 Silent p.G24G 0.45 TCGA-FR-A726-01 11 10506582 10506582 C T AMPD3 Missense_Mutation p.P278S 0.52 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 10555689 10555689 G A RNF141 Missense_Mutation p.S6L 0.52 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A726-01 11 105769034 105769034 G A GRIA4 Missense_Mutation p.G256R 0.46 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 11 105965335 105965335 T C AASDHPPT Missense_Mutation p.F240S 0.33 tolerated(0.4) probably_damaging(0.937) TCGA-FR-A726-01 11 10622534 10622534 C T MRVI1 Missense_Mutation p.D650N 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 11 107506474 107506474 G A ELMOD1 Missense_Mutation p.E135K 0.54 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 107518235 107518235 G A ELMOD1 Silent p.R154R 0.51 TCGA-FR-A726-01 11 107677585 107677585 C T SLC35F2 Silent p.G144G 0.35 TCGA-FR-A726-01 11 107677586 107677586 C T SLC35F2 Missense_Mutation p.G144E 0.35 tolerated(0.11) possibly_damaging(0.646) TCGA-FR-A726-01 11 107917032 107917032 G A CUL5 Missense_Mutation p.G57D 0.51 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 11 108352813 108352813 G A KDELC2 Missense_Mutation p.P274L 0.52 deleterious(0) probably_damaging(0.958) TCGA-FR-A726-01 11 108384032 108384032 C T EXPH5 Silent p.G734G 0.50 TCGA-FR-A726-01 11 108385013 108385013 C T EXPH5 Silent p.R407R 0.44 TCGA-FR-A726-01 11 108385331 108385331 C T EXPH5 Silent p.R301R 0.49 TCGA-FR-A726-01 11 108559762 108559762 C T DDX10 Silent p.S316S 0.08 TCGA-FR-A726-01 11 1097181 1097181 G A MUC2 Splice_Site p.X2200_splice 0.13 TCGA-FR-A726-01 11 1097355 1097355 G A MUC2 Silent p.K2257K 0.48 TCGA-FR-A726-01 11 1097356 1097356 G A MUC2 Missense_Mutation p.G2258S 0.48 unknown(0) TCGA-FR-A726-01 11 110450851 110450851 G A ARHGAP20 Missense_Mutation p.S940F 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 111229588 111229588 C T POU2AF1 Silent p.V24V 0.61 TCGA-FR-A726-01 11 111385519 111385519 G A C11orf88 Missense_Mutation p.G4R 0.55 tolerated(1) benign(0.01) TCGA-FR-A726-01 11 113075055 113075055 G A NCAM1 Missense_Mutation p.G118R 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 113133598 113133598 C T NCAM1 Intron 0.45 TCGA-FR-A726-01 11 113146066 113146066 C T NCAM1 Missense_Mutation p.P894L 0.38 deleterious(0.02) benign(0.018) TCGA-FR-A726-01 11 113270413 113270413 G A ANKK1 Silent p.L574L 0.39 TCGA-FR-A726-01 11 113651039 113651039 T C CLDN25 Silent p.I174I 0.17 TCGA-FR-A726-01 11 113673999 113673999 G A USP28 Nonsense_Mutation p.Q915* 0.49 TCGA-FR-A726-01 11 113934918 113934918 G A ZBTB16 Missense_Mutation p.R299Q 0.33 tolerated_low_confidence(0.12) benign(0.313) TCGA-FR-A726-01 11 114453046 114453046 G A NXPE4 Missense_Mutation p.S265F 0.64 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 11 114568887 114568887 A G NXPE2 Missense_Mutation p.K85E 0.59 tolerated(0.09) benign(0.033) TCGA-FR-A726-01 11 115080294 115080294 C T CADM1 Missense_Mutation p.D360N 0.55 tolerated(0.27) benign(0.038) TCGA-FR-A726-01 11 116691903 116691903 C T APOA4 Missense_Mutation p.E291K 0.10 tolerated(0.13) benign(0.2) TCGA-FR-A726-01 11 116693442 116693442 G A APOA4 Nonsense_Mutation p.Q37* 0.34 TCGA-FR-A726-01 11 117062637 117062637 G A SIDT2 Silent p.K593K 0.43 TCGA-FR-A726-01 11 117309604 117309604 G A DSCAML1 Nonsense_Mutation p.R1474* 0.48 TCGA-FR-A726-01 11 118023336 118023336 C T SCN4B Missense_Mutation p.G18E 0.30 tolerated(0.13) probably_damaging(0.976) TCGA-FR-A726-01 11 118348798 118348798 C T KMT2A Nonsense_Mutation p.R1151* 0.50 TCGA-FR-A726-01 11 118849804 118849804 G A FOXR1 Missense_Mutation p.E92K 0.42 tolerated(0.28) benign(0.008) TCGA-FR-A726-01 11 118944612 118944612 C T VPS11 Missense_Mutation p.H396Y 0.62 deleterious(0) probably_damaging(0.961) TCGA-FR-A726-01 11 119001503 119001503 C T HINFP Missense_Mutation p.R84C 0.08 deleterious(0.05) probably_damaging(0.996) TCGA-FR-A726-01 11 119045559 119045559 C T NLRX1 Missense_Mutation p.P416L 0.44 tolerated(0.07) benign(0.046) TCGA-FR-A726-01 11 119056550 119056550 C T PDZD3 Intron 0.39 TCGA-FR-A726-01 11 119061126 119061126 G A CCDC153 Silent p.A172A 0.10 TCGA-FR-A726-01 11 119103218 119103218 G A CBL Missense_Mutation p.D86N 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A726-01 11 119146716 119146716 C T CBL Silent p.F293F 0.51 TCGA-FR-A726-01 11 119148946 119148946 A C CBL Missense_Mutation p.K389T 0.51 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 119243530 119243530 G A USP2 Missense_Mutation p.P221S 0.52 tolerated(0.34) benign(0.055) TCGA-FR-A726-01 11 119998203 119998203 C T TRIM29 Silent p.K325K 0.44 TCGA-FR-A726-01 11 120008220 120008220 C T TRIM29 Missense_Mutation p.D174N 0.59 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 120169049 120169049 G C POU2F3 Missense_Mutation p.A72P 0.52 tolerated(0.22) possibly_damaging(0.636) TCGA-FR-A726-01 11 120186101 120186101 C T POU2F3 Missense_Mutation p.S369F 0.13 deleterious(0.03) possibly_damaging(0.898) TCGA-FR-A726-01 11 120312875 120312875 C T ARHGEF12 Silent p.F422F 0.10 TCGA-FR-A726-01 11 120312876 120312876 C T ARHGEF12 Missense_Mutation p.L423F 0.10 deleterious(0.04) possibly_damaging(0.821) TCGA-FR-A726-01 11 120811113 120811113 G A GRIK4 Missense_Mutation p.D512N 0.40 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 11 120957569 120957569 G A TBCEL Missense_Mutation p.E347K 0.56 tolerated(0.57) benign(0.085) TCGA-FR-A726-01 11 120996150 120996150 C T TECTA Missense_Mutation p.S448F 0.56 deleterious(0) possibly_damaging(0.653) TCGA-FR-A726-01 11 120996432 120996432 A T TECTA Missense_Mutation p.D542V 0.53 deleterious(0.03) benign(0.16) TCGA-FR-A726-01 11 120998546 120998546 G C TECTA Silent p.S620S 0.59 TCGA-FR-A726-01 11 120998925 120998925 C T TECTA Missense_Mutation p.P747S 0.47 tolerated(0.86) benign(0.026) TCGA-FR-A726-01 11 121016293 121016293 G A TECTA Silent p.L1191L 0.54 TCGA-FR-A726-01 11 121391475 121391475 G A SORL1 Missense_Mutation p.V441I 0.51 deleterious(0.03) possibly_damaging(0.878) TCGA-FR-A726-01 11 121424683 121424683 C T SORL1 Silent p.S768S 0.08 TCGA-FR-A726-01 11 121448047 121448047 C T SORL1 Missense_Mutation p.S1173F 0.52 tolerated(0.06) possibly_damaging(0.515) TCGA-FR-A726-01 11 121475877 121475877 G A SORL1 Silent p.G1569G 0.44 TCGA-FR-A726-01 11 1215488 1215488 G A MUC5AC RNA 0.19 TCGA-FR-A726-01 11 12183950 12183950 C T MICAL2 Missense_Mutation p.S83L 0.57 deleterious(0) benign(0.094) TCGA-FR-A726-01 11 122930064 122930064 G A HSPA8 Intron 0.78 TCGA-FR-A726-01 11 122931865 122931865 C T HSPA8 Silent p.K56K 0.51 TCGA-FR-A726-01 11 123508916 123508916 C T SCN3B Missense_Mutation p.E188K 0.57 deleterious(0.01) possibly_damaging(0.566) TCGA-FR-A726-01 11 123624380 123624380 G A OR6X1 Silent p.L283L 0.48 TCGA-FR-A726-01 11 123625061 123625061 G A OR6X1 Missense_Mutation p.P56S 0.54 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 123676722 123676722 G A OR6M1 Silent p.L112L 0.58 TCGA-FR-A726-01 11 123753700 123753700 G A TMEM225 3'UTR 0.60 TCGA-FR-A726-01 11 123756177 123756177 G A TMEM225 5'UTR 0.27 TCGA-FR-A726-01 11 123777613 123777613 C T OR8D4 Missense_Mutation p.H159Y 0.39 deleterious(0.03) benign(0.015) TCGA-FR-A726-01 11 123778063 123778063 A T OR8D4 Missense_Mutation p.I309L 0.47 tolerated(0.69) benign(0.001) TCGA-FR-A726-01 11 123886424 123886424 G A OR10G4 Missense_Mutation p.R48K 0.31 tolerated(0.22) benign(0.001) TCGA-FR-A726-01 11 123886467 123886467 C T OR10G4 Silent p.T62T 0.24 TCGA-FR-A726-01 11 123886596 123886596 C T OR10G4 Silent p.F105F 0.32 TCGA-FR-A726-01 11 123886597 123886597 C T OR10G4 Silent p.L106L 0.32 TCGA-FR-A726-01 11 123893761 123893761 C T OR10G9 Silent p.G14G 0.14 TCGA-FR-A726-01 11 123894254 123894254 G A OR10G9 Missense_Mutation p.D179N 0.50 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 11 123909592 123909592 C T OR10G7 Silent p.G39G 0.39 TCGA-FR-A726-01 11 123909667 123909667 G A OR10G7 Silent p.G14G 0.12 TCGA-FR-A726-01 11 124180141 124180141 G A OR8D1 Silent p.I174I 0.48 TCGA-FR-A726-01 11 124189174 124189174 C T OR8D2 Missense_Mutation p.G307E 0.46 tolerated(0.26) benign(0.058) TCGA-FR-A726-01 11 124189203 124189203 C T OR8D2 Silent p.V297V 0.43 TCGA-FR-A726-01 11 124189208 124189208 C T OR8D2 Missense_Mutation p.D296N 0.43 deleterious(0.02) benign(0.004) TCGA-FR-A726-01 11 124253113 124253113 G A OR8B2 Missense_Mutation p.L43F 0.46 deleterious_low_confidence(0.05) benign(0.005) TCGA-FR-A726-01 11 124266558 124266558 G A OR8B3 Silent p.S230S 0.39 TCGA-FR-A726-01 11 124412918 124412918 G A OR8B12 Silent p.V211V 0.52 TCGA-FR-A726-01 11 124489406 124489406 G A PANX3 Missense_Mutation p.E252K 0.44 deleterious(0.01) possibly_damaging(0.45) TCGA-FR-A726-01 11 124793669 124793669 G A HEPACAM Missense_Mutation p.P222L 0.48 deleterious(0.01) possibly_damaging(0.708) TCGA-FR-A726-01 11 124908375 124908375 C T CCDC15 Silent p.I820I 0.33 TCGA-FR-A726-01 11 12535043 12535043 C T PARVA Intron 0.41 TCGA-FR-A726-01 11 125647831 125647831 G A PATE2 Missense_Mutation p.S48F 0.49 tolerated(0.22) benign(0.091) TCGA-FR-A726-01 11 1262847 1262847 G A MUC5B Nonsense_Mutation p.W1579* 0.50 TCGA-FR-A726-01 11 1269780 1269780 G A MUC5B Nonsense_Mutation p.W3890* 0.46 TCGA-FR-A726-01 11 129306822 129306822 G A BARX2 Missense_Mutation p.E122K 0.52 tolerated(0.16) possibly_damaging(0.787) TCGA-FR-A726-01 11 129306905 129306905 G A BARX2 Silent p.E149E 0.50 TCGA-FR-A726-01 11 130332574 130332574 C T ADAMTS15 Nonsense_Mutation p.Q481* 0.30 TCGA-FR-A726-01 11 130343213 130343213 C T ADAMTS15 Missense_Mutation p.L784F 0.52 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 11 132180089 132180089 C T NTM Missense_Mutation p.P249S 0.42 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 132306008 132306008 C T OPCML Silent p.G303G 0.48 TCGA-FR-A726-01 11 132306055 132306055 C T OPCML Missense_Mutation p.E288K 0.48 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 11 132813038 132813038 C T OPCML 5'UTR 0.42 TCGA-FR-A726-01 11 133790385 133790385 C T IGSF9B Missense_Mutation p.G1079R 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.565) TCGA-FR-A726-01 11 134162042 134162042 G A GLB1L3 Missense_Mutation p.G249E 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 11 134182734 134182734 G A GLB1L3 Missense_Mutation p.G485R 0.62 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 11 134214955 134214955 C T GLB1L2 Silent p.I127I 0.17 TCGA-FR-A726-01 11 134240195 134240195 C T GLB1L2 Missense_Mutation p.L373F 0.49 tolerated(0.05) benign(0.159) TCGA-FR-A726-01 11 134241380 134241380 G A GLB1L2 Silent p.L474L 0.44 TCGA-FR-A726-01 11 14380321 14380321 G A RRAS2 Silent p.I32I 0.46 TCGA-FR-A726-01 11 15098971 15098971 C T CALCB Missense_Mutation p.R122C 0.55 deleterious(0.02) benign(0.391) TCGA-FR-A726-01 11 1605815 1605815 G A KRTAP5-1 Missense_Mutation p.S222F 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-FR-A726-01 11 1643029 1643029 C T KRTAP5-4 Missense_Mutation p.G99R 0.24 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 11 17167419 17167419 G A PIK3C2A Missense_Mutation p.A544V 0.53 tolerated(0.47) benign(0) TCGA-FR-A726-01 11 17323410 17323410 C T NUCB2 Silent p.S124S 0.53 TCGA-FR-A726-01 11 17515878 17515878 C T USH1C 3'Flank 0.57 TCGA-FR-A726-01 11 17742815 17742815 G A MYOD1 Silent p.G241G 0.50 TCGA-FR-A726-01 11 18231938 18231938 C T RP11-113D6.10 3'UTR 0.48 TCGA-FR-A726-01 11 18232101 18232101 G A RP11-113D6.10 3'UTR 0.50 TCGA-FR-A726-01 11 18456337 18456337 C T LDHC Missense_Mutation p.R157C 0.51 tolerated(0.09) probably_damaging(0.964) TCGA-FR-A726-01 11 18541071 18541071 G A TSG101 Missense_Mutation p.S41L 0.42 tolerated(0.25) benign(0.029) TCGA-FR-A726-01 11 18723592 18723592 G A TMEM86A 3'UTR 0.53 TCGA-FR-A726-01 11 18723608 18723608 C T TMEM86A 3'UTR 0.46 TCGA-FR-A726-01 11 18955795 18955795 G A MRGPRX1 Silent p.I179I 0.33 TCGA-FR-A726-01 11 19077810 19077810 C T MRGPRX2 Missense_Mutation p.G47E 0.50 deleterious(0.02) probably_damaging(0.989) TCGA-FR-A726-01 11 20949957 20949957 C T NELL1 Missense_Mutation p.P310L 0.47 deleterious(0) possibly_damaging(0.788) TCGA-FR-A726-01 11 2415365 2415365 C T CD81 Silent p.F74F 0.46 TCGA-FR-A726-01 11 24784837 24784837 C T LUZP2 Nonsense_Mutation p.R127* 0.43 TCGA-FR-A726-01 11 26484648 26484648 G A ANO3 Missense_Mutation p.D129N 0.36 tolerated(0.45) benign(0) TCGA-FR-A726-01 11 26547226 26547226 G A ANO3 Missense_Mutation p.R246K 0.40 tolerated(0.6) benign(0.021) TCGA-FR-A726-01 11 26587000 26587000 C T MUC15 Missense_Mutation p.A163T 0.32 tolerated_low_confidence(0.12) benign(0.017) TCGA-FR-A726-01 11 26621237 26621237 C T ANO3 Silent p.F604F 0.34 TCGA-FR-A726-01 11 26713970 26713970 G A SLC5A12 Intron 0.35 TCGA-FR-A726-01 11 26743259 26743259 C T SLC5A12 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.885) TCGA-FR-A726-01 11 27389682 27389682 G A LGR4 Missense_Mutation p.S863L 0.24 tolerated(0.06) benign(0.194) TCGA-FR-A726-01 11 27389932 27389932 C T LGR4 Missense_Mutation p.E780K 0.38 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 11 27695807 27695807 G A BDNF Missense_Mutation p.H9Y 0.29 deleterious_low_confidence(0) benign(0.291) TCGA-FR-A726-01 11 30032891 30032891 G A KCNA4 Silent p.I445I 0.33 TCGA-FR-A726-01 11 30255152 30255152 C T FSHB Silent p.I65I 0.20 TCGA-FR-A726-01 11 30938550 30938550 G A DCDC1 Nonsense_Mutation p.R1107* 0.41 TCGA-FR-A726-01 11 31113004 31113004 G A DCDC1 Missense_Mutation p.P725S 0.21 tolerated(0.2) benign(0.04) TCGA-FR-A726-01 11 31123748 31123748 C A DCDC1 Missense_Mutation p.L653F 0.36 tolerated(0.08) probably_damaging(0.943) TCGA-FR-A726-01 11 31128396 31128396 G A DCDC1 Missense_Mutation p.L567F 0.36 tolerated(0.36) probably_damaging(0.975) TCGA-FR-A726-01 11 3114763 3114763 G A OSBPL5 Missense_Mutation p.S647F 0.53 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 3125491 3125491 G A OSBPL5 Silent p.F392F 0.40 TCGA-FR-A726-01 11 31329277 31329277 C T DCDC1 Missense_Mutation p.D115N 0.32 tolerated(0.24) benign(0.206) TCGA-FR-A726-01 11 314152 314152 C T IFITM1 5'UTR 0.20 TCGA-FR-A726-01 11 31531539 31531539 C T ELP4 Silent p.L70L 0.25 TCGA-FR-A726-01 11 320871 320871 C T IFITM3 5'UTR 0.49 TCGA-FR-A726-01 11 320872 320872 C T IFITM3 5'UTR 0.49 TCGA-FR-A726-01 11 32120026 32120026 C T RCN1 Silent p.A193A 0.29 TCGA-FR-A726-01 11 32410512 32410512 C T WT1 3'UTR 0.27 TCGA-FR-A726-01 11 32460415 32460415 C T WT1 5'Flank 0.19 TCGA-FR-A726-01 11 32610244 32610244 C T EIF3M Missense_Mutation p.R94C 0.34 tolerated(0.05) possibly_damaging(0.872) TCGA-FR-A726-01 11 33375104 33375104 C T HIPK3 Missense_Mutation p.P1213L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 33667294 33667294 C T KIAA1549L Silent p.S1527S 0.29 TCGA-FR-A726-01 11 33682433 33682433 C T KIAA1549L Missense_Mutation p.A1714V 0.17 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 33682434 33682434 C T KIAA1549L Silent p.A1714A 0.17 TCGA-FR-A726-01 11 33768858 33768858 G A FBXO3 Missense_Mutation p.P353S 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 3428790 3428790 G A TSSC2 RNA 0.54 TCGA-FR-A726-01 11 34502395 34502395 C T ELF5 Missense_Mutation p.E209K 0.41 deleterious(0) possibly_damaging(0.738) TCGA-FR-A726-01 11 35440501 35440501 C T SLC1A2 Missense_Mutation p.E5K 0.24 tolerated_low_confidence(0.79) benign(0) TCGA-FR-A726-01 11 36248959 36248959 C T LDLRAD3 Missense_Mutation p.S260F 0.08 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-FR-A726-01 11 36295940 36295940 C A COMMD9 3'UTR 0.56 TCGA-FR-A726-01 11 36484077 36484077 C T PRR5L Nonsense_Mutation p.Q300* 0.37 TCGA-FR-A726-01 11 36614955 36614955 C T RAG2 Missense_Mutation p.G255E 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 11 40137328 40137328 G A LRRC4C Missense_Mutation p.P172L 0.31 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 11 406531 406531 G A SIGIRR Missense_Mutation p.S296F 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A726-01 11 43284466 43284466 C G HNRNPKP3 RNA 0.32 TCGA-FR-A726-01 11 43345032 43345032 C T API5 Missense_Mutation p.S199F 0.31 deleterious(0.01) probably_damaging(0.935) TCGA-FR-A726-01 11 44080120 44080120 G A ACCSL Missense_Mutation p.E499K 0.28 deleterious(0.04) benign(0.302) TCGA-FR-A726-01 11 44100268 44100268 C T ACCS Missense_Mutation p.P256L 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 11 4411451 4411451 G A TRIM21 Silent p.L63L 0.53 TCGA-FR-A726-01 11 44265897 44265897 C T EXT2 3'UTR 0.22 TCGA-FR-A726-01 11 44286633 44286633 G A ALX4 Missense_Mutation p.A336V 0.36 deleterious(0.03) benign(0.037) TCGA-FR-A726-01 11 45241212 45241212 C T PRDM11 Missense_Mutation p.R216W 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-FR-A726-01 11 45265871 45265871 C T SYT13 Missense_Mutation p.R338Q 0.30 tolerated(0.53) benign(0.001) TCGA-FR-A726-01 11 4566931 4566931 C T OR52M1 Missense_Mutation p.L171F 0.43 tolerated(0.23) benign(0.012) TCGA-FR-A726-01 11 45924649 45924649 C T MAPK8IP1 Missense_Mutation p.S444F 0.27 deleterious(0) benign(0.134) TCGA-FR-A726-01 11 45928464 45928464 G A C11orf94 Missense_Mutation p.S44F 0.33 deleterious(0.01) possibly_damaging(0.776) TCGA-FR-A726-01 11 45935926 45935926 G A PEX16 Missense_Mutation p.P212L 0.34 tolerated(0.15) benign(0.115) TCGA-FR-A726-01 11 45975083 45975083 G A PHF21A Missense_Mutation p.P363S 0.15 deleterious(0.02) benign(0.014) TCGA-FR-A726-01 11 45987125 45987125 G A PHF21A Missense_Mutation p.P245L 0.38 deleterious(0) probably_damaging(0.964) TCGA-FR-A726-01 11 46393660 46393660 C T DGKZ Silent p.T477T 0.33 TCGA-FR-A726-01 11 46395951 46395951 G A DGKZ Missense_Mutation p.A658T 0.35 deleterious(0.01) possibly_damaging(0.883) TCGA-FR-A726-01 11 46709721 46709721 A C ARHGAP1 Splice_Site p.X106_splice 0.11 TCGA-FR-A726-01 11 4674042 4674042 C T OR51E1 Nonsense_Mutation p.Q96* 0.54 TCGA-FR-A726-01 11 46745058 46745058 C T F2 Silent p.I183I 0.37 TCGA-FR-A726-01 11 46748082 46748082 G A F2 Silent p.L303L 0.27 TCGA-FR-A726-01 11 46911521 46911521 G A LRP4 Missense_Mutation p.T689I 0.37 deleterious(0.01) benign(0.254) TCGA-FR-A726-01 11 47356670 47356670 C T MYBPC3 Missense_Mutation p.R943Q 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 47399884 47399884 C T SPI1 Missense_Mutation p.M7I 0.33 deleterious(0.02) benign(0.016) TCGA-FR-A726-01 11 47712018 47712018 G A AGBL2 Missense_Mutation p.P414L 0.32 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 11 47800638 47800638 G C NUP160 3'UTR 0.31 TCGA-FR-A726-01 11 47837156 47837156 G A NUP160 Nonsense_Mutation p.R521* 0.27 TCGA-FR-A726-01 11 4791007 4791007 G A OR51F1 Silent p.I47I 0.47 TCGA-FR-A726-01 11 48239072 48239072 C T OR4B1 Silent p.T237T 0.33 TCGA-FR-A726-01 11 48267433 48267433 G A OR4X2 Missense_Mutation p.D260N 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 48285873 48285873 C G OR4X1 Missense_Mutation p.S154C 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 48346788 48346788 C T OR4C3 Missense_Mutation p.S99F 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 48346831 48346831 G A OR4C3 Silent p.E113E 0.19 TCGA-FR-A726-01 11 4842778 4842778 G A OR51F2 Missense_Mutation p.G55R 0.49 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 48511096 48511096 C T OR4A47 Missense_Mutation p.P251L 0.09 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-FR-A726-01 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.55 deleterious(0) probably_damaging(0.965) TCGA-FR-A726-01 11 4870161 4870161 G A OR51S1 Missense_Mutation p.A93V 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 11 49168304 49168304 C T FOLH1 3'UTR 0.33 TCGA-FR-A726-01 11 49168415 49168415 C T FOLH1 Missense_Mutation p.E716K 0.23 tolerated(0.13) benign(0.005) TCGA-FR-A726-01 11 49194948 49194948 G A FOLH1 Missense_Mutation p.H396Y 0.32 tolerated(0.65) probably_damaging(0.984) TCGA-FR-A726-01 11 49221976 49221976 G A FOLH1 Missense_Mutation p.P81L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 49227709 49227709 G A FOLH1 Missense_Mutation p.S45F 0.20 deleterious(0.01) benign(0.005) TCGA-FR-A726-01 11 4976533 4976533 G A OR51A2 Silent p.I137I 0.19 TCGA-FR-A726-01 11 49831533 49831533 C T RP11-707M1.1 RNA 0.33 TCGA-FR-A726-01 11 49974361 49974361 C T OR4C13 Silent p.H129H 0.35 TCGA-FR-A726-01 11 49974717 49974717 C T OR4C13 Missense_Mutation p.S248F 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-FR-A726-01 11 49974880 49974880 G A OR4C13 Silent p.R302R 0.36 TCGA-FR-A726-01 11 50003193 50003193 G A OR4C12 Missense_Mutation p.P282L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FR-A726-01 11 50003543 50003543 G A OR4C12 Silent p.P165P 0.38 TCGA-FR-A726-01 11 5068133 5068133 G A OR52J3 Silent p.V126V 0.54 TCGA-FR-A726-01 11 5080058 5080058 C T OR52E2 Missense_Mutation p.R267Q 0.43 tolerated(0.36) benign(0.03) TCGA-FR-A726-01 11 5080367 5080367 A G OR52E2 Missense_Mutation p.L164P 0.48 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 5142419 5142419 G A OR52A4 RNA 0.56 TCGA-FR-A726-01 11 5142709 5142709 G A OR52A4 RNA 0.07 TCGA-FR-A726-01 11 5153419 5153419 G A OR52A5 Missense_Mutation p.L152F 0.15 deleterious(0.05) benign(0.073) TCGA-FR-A726-01 11 5269711 5269711 C T HBG1 Missense_Mutation p.G108R 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 5274629 5274629 C T HBG2 Missense_Mutation p.G108R 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 5322305 5322305 A G OR51B4 Missense_Mutation p.I291T 0.47 deleterious(0.01) possibly_damaging(0.616) TCGA-FR-A726-01 11 5344876 5344876 G A OR51B2 Silent p.L218L 0.34 TCGA-FR-A726-01 11 5363896 5363896 G A OR51B5 Missense_Mutation p.P287S 0.09 deleterious(0.02) probably_damaging(0.931) TCGA-FR-A726-01 11 5443912 5443912 C T OR51Q1 Missense_Mutation p.S161F 0.60 tolerated(0.32) possibly_damaging(0.877) TCGA-FR-A726-01 11 55033101 55033101 C T TRIM48 Missense_Mutation p.S162F 0.10 tolerated(0.14) benign(0.111) TCGA-FR-A726-01 11 55038377 55038377 C T TRIM48 3'UTR 0.20 TCGA-FR-A726-01 11 55062879 55062879 G A TRIM51HP Intron 0.35 TCGA-FR-A726-01 11 55065015 55065015 T A TRIM51HP RNA 0.23 TCGA-FR-A726-01 11 55065577 55065577 C T TRIM51HP RNA 0.42 TCGA-FR-A726-01 11 55065601 55065601 C G TRIM51HP RNA 0.29 TCGA-FR-A726-01 11 55110832 55110832 C T OR4A16 Silent p.S52S 0.06 TCGA-FR-A726-01 11 55110932 55110932 G A OR4A16 Missense_Mutation p.D86N 0.30 tolerated_low_confidence(0.18) benign(0.026) TCGA-FR-A726-01 11 55111458 55111458 C T OR4A16 Missense_Mutation p.S261F 0.23 tolerated_low_confidence(0.07) benign(0.33) TCGA-FR-A726-01 11 55135530 55135530 C T OR4A15 Silent p.V57V 0.28 TCGA-FR-A726-01 11 55135584 55135584 G A OR4A15 Silent p.V75V 0.26 TCGA-FR-A726-01 11 55135858 55135858 C T OR4A15 Nonsense_Mutation p.R167* 0.30 TCGA-FR-A726-01 11 5529725 5529725 G A UBQLN3 Missense_Mutation p.S355F 0.50 tolerated(0.31) benign(0.048) TCGA-FR-A726-01 11 55321926 55321926 C T OR4C15 Silent p.F48F 0.32 TCGA-FR-A726-01 11 55322643 55322643 G A OR4C15 Nonsense_Mutation p.W287* 0.32 TCGA-FR-A726-01 11 55322738 55322738 C T OR4C15 Missense_Mutation p.S319F 0.34 tolerated_low_confidence(0.13) possibly_damaging(0.751) TCGA-FR-A726-01 11 55405837 55405837 G A OR4P4 Missense_Mutation p.E2K 0.31 tolerated(0.08) benign(0.015) TCGA-FR-A726-01 11 55418484 55418484 C T OR4S2 Silent p.I35I 0.36 TCGA-FR-A726-01 11 55418616 55418616 G A OR4S2 Missense_Mutation p.M79I 0.28 deleterious(0.01) benign(0.03) TCGA-FR-A726-01 11 55563224 55563224 C T OR5D14 Missense_Mutation p.L65F 0.35 deleterious(0.01) possibly_damaging(0.637) TCGA-FR-A726-01 11 55587930 55587930 C T OR5D18 Silent p.A275A 0.31 TCGA-FR-A726-01 11 55594765 55594765 G A OR5L2 Missense_Mutation p.R24K 0.30 tolerated(0.25) benign(0.118) TCGA-FR-A726-01 11 55594787 55594787 C T OR5L2 Silent p.F31F 0.09 TCGA-FR-A726-01 11 55595280 55595280 G A OR5L2 Missense_Mutation p.E196K 0.39 tolerated(0.09) benign(0.032) TCGA-FR-A726-01 11 55595327 55595327 C T OR5L2 Silent p.I211I 0.31 TCGA-FR-A726-01 11 55595333 55595333 C T OR5L2 Silent p.I213I 0.34 TCGA-FR-A726-01 11 55653307 55653307 G A TRIM51 Missense_Mutation p.E135K 0.33 tolerated(0.07) benign(0.167) TCGA-FR-A726-01 11 55658701 55658701 G A TRIM51 Missense_Mutation p.D318N 0.33 tolerated(0.49) benign(0.005) TCGA-FR-A726-01 11 55658717 55658717 G A TRIM51 Missense_Mutation p.G323E 0.31 tolerated(1) benign(0) TCGA-FR-A726-01 11 55681511 55681511 G A OR5W2 Missense_Mutation p.P183L 0.35 deleterious(0.01) possibly_damaging(0.898) TCGA-FR-A726-01 11 55703373 55703373 C T OR5I1 Silent p.L168L 0.44 TCGA-FR-A726-01 11 55735569 55735569 G A OR10AG1 Missense_Mutation p.P124L 0.27 deleterious(0.02) benign(0.052) TCGA-FR-A726-01 11 55861061 55861061 C T OR8I2 Missense_Mutation p.S93F 0.14 deleterious(0.01) benign(0.008) TCGA-FR-A726-01 11 55873004 55873004 C T OR8H2 Silent p.S162S 0.31 TCGA-FR-A726-01 11 55890291 55890291 C T OR8H3 Missense_Mutation p.P148L 0.33 deleterious(0.01) benign(0.232) TCGA-FR-A726-01 11 55944750 55944750 C T OR5J2 Silent p.I219I 0.30 TCGA-FR-A726-01 11 56000385 56000385 G A OR5T2 Nonsense_Mutation p.Q93* 0.34 TCGA-FR-A726-01 11 56058536 56058536 C T OR8H1 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 56086195 56086195 G A OR8K3 Missense_Mutation p.R138Q 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-FR-A726-01 11 56230572 56230572 G A OR5M9 Silent p.F102F 0.34 TCGA-FR-A726-01 11 56230606 56230606 G A OR5M9 Missense_Mutation p.S91F 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A726-01 11 56237083 56237083 C T OR5M3 Silent p.K297K 0.27 TCGA-FR-A726-01 11 5624911 5624911 G A TRIM6 Silent p.Q151Q 0.44 TCGA-FR-A726-01 11 56431347 56431347 C T OR5AR1 Silent p.F62F 0.32 TCGA-FR-A726-01 11 56432040 56432040 G A OR5AR1 Silent p.R293R 0.33 TCGA-FR-A726-01 11 56468745 56468745 G A OR9G1 Silent p.K294K 0.23 TCGA-FR-A726-01 11 56511057 56511057 G A OR9G4 Silent p.F77F 0.40 TCGA-FR-A726-01 11 56511279 56511279 G A OR9G4 Silent p.F3F 0.33 TCGA-FR-A726-01 11 56756774 56756774 C T OR5AK2 Missense_Mutation p.P129L 0.30 deleterious(0) benign(0.242) TCGA-FR-A726-01 11 56756775 56756775 C T OR5AK2 Silent p.P129P 0.31 TCGA-FR-A726-01 11 5686260 5686260 G A TRIM5 Missense_Mutation p.P421S 0.09 tolerated(0.5) benign(0.074) TCGA-FR-A726-01 11 57004401 57004401 G A APLNR Silent p.S26S 0.29 TCGA-FR-A726-01 11 5701378 5701378 C T TRIM5 Silent p.K10K 0.45 TCGA-FR-A726-01 11 57077065 57077065 G A TNKS1BP1 Silent p.L1040L 0.33 TCGA-FR-A726-01 11 57155272 57155272 G A PRG2 Nonsense_Mutation p.Q189* 0.40 TCGA-FR-A726-01 11 57235085 57235085 C T RTN4RL2 Missense_Mutation p.P12L 0.10 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FR-A726-01 11 57310143 57310143 G A SMTNL1 Missense_Mutation p.E28K 0.42 deleterious(0.03) benign(0.03) TCGA-FR-A726-01 11 57313509 57313509 G A SMTNL1 Missense_Mutation p.G376E 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A726-01 11 57379256 57379256 C T SERPING1 Missense_Mutation p.R366C 0.33 tolerated(0.19) possibly_damaging(0.723) TCGA-FR-A726-01 11 57381808 57381808 C T SERPING1 Silent p.F419F 0.25 TCGA-FR-A726-01 11 57457583 57457583 C T ZDHHC5 Silent p.S155S 0.10 TCGA-FR-A726-01 11 5758209 5758209 C T OR56B1 Silent p.L155L 0.55 TCGA-FR-A726-01 11 5776063 5776063 C T OR52N4 Silent p.F31F 0.47 TCGA-FR-A726-01 11 57982598 57982598 T G OR1S1 Missense_Mutation p.L128V 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 57982953 57982953 G A OR1S1 Missense_Mutation p.G246E 0.27 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 11 5799223 5799223 C T OR52N5 Silent p.L214L 0.45 TCGA-FR-A726-01 11 5809174 5809174 G A OR52N1 Silent p.N291N 0.48 TCGA-FR-A726-01 11 5809771 5809771 C T OR52N1 Silent p.K92K 0.53 TCGA-FR-A726-01 11 58126369 58126369 G A OR5B17 Silent p.Y58Y 0.26 TCGA-FR-A726-01 11 58190609 58190609 C T OR5B2 Silent p.G42G 0.33 TCGA-FR-A726-01 11 58206830 58206830 G A OR5B12 Silent p.F265F 0.29 TCGA-FR-A726-01 11 58206881 58206881 G A OR5B12 Silent p.I248I 0.41 TCGA-FR-A726-01 11 58295607 58295607 G A LPXN Missense_Mutation p.S272L 0.29 deleterious(0) benign(0.427) TCGA-FR-A726-01 11 58477170 58477170 C T GLYAT 3'UTR 0.31 TCGA-FR-A726-01 11 58477473 58477473 C T GLYAT Nonsense_Mutation p.W219* 0.07 TCGA-FR-A726-01 11 58478199 58478199 G A GLYAT Missense_Mutation p.L118F 0.34 deleterious(0.02) benign(0.443) TCGA-FR-A726-01 11 5862272 5862272 G A OR52E6 Missense_Mutation p.P286S 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 5862275 5862275 G A OR52E6 Missense_Mutation p.P285S 0.51 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 5862720 5862720 C T OR52E6 Missense_Mutation p.M136I 0.47 tolerated(0.13) benign(0.02) TCGA-FR-A726-01 11 58722310 58722310 C T GLYATL1 Missense_Mutation p.S116L 0.29 tolerated(0.51) benign(0.001) TCGA-FR-A726-01 11 5878282 5878282 G A OR52E8 Silent p.I217I 0.47 TCGA-FR-A726-01 11 58891656 58891656 C T FAM111B Missense_Mutation p.T29I 0.36 tolerated(0.1) benign(0.272) TCGA-FR-A726-01 11 59190326 59190326 C T OR5A2 Missense_Mutation p.G34E 0.20 tolerated(0.27) possibly_damaging(0.835) TCGA-FR-A726-01 11 59224841 59224841 G A OR4D6 Missense_Mutation p.M136I 0.30 deleterious(0.02) probably_damaging(0.958) TCGA-FR-A726-01 11 59245289 59245289 C T OR4D10 Silent p.P129P 0.28 TCGA-FR-A726-01 11 59245422 59245422 C T OR4D10 Missense_Mutation p.L174F 0.40 deleterious(0) probably_damaging(0.968) TCGA-FR-A726-01 11 59271395 59271395 C T OR4D11 Missense_Mutation p.S116F 0.25 deleterious(0.01) probably_damaging(0.937) TCGA-FR-A726-01 11 59283087 59283087 G A OR4D9 Silent p.R234R 0.37 TCGA-FR-A726-01 11 59623366 59623366 C T TCN1 Missense_Mutation p.D305N 0.24 tolerated(0.39) benign(0.009) TCGA-FR-A726-01 11 59860902 59860902 C T MS4A2 Silent p.A136A 0.33 TCGA-FR-A726-01 11 60068516 60068516 A G MS4A4A Missense_Mutation p.T125A 0.32 deleterious(0.01) possibly_damaging(0.507) TCGA-FR-A726-01 11 60070120 60070120 C T MS4A4A Missense_Mutation p.S159L 0.34 tolerated(0.05) benign(0.048) TCGA-FR-A726-01 11 60233462 60233462 C T MS4A1 Silent p.I135I 0.33 TCGA-FR-A726-01 11 6023776 6023776 G A OR56A4 Silent p.V201V 0.33 TCGA-FR-A726-01 11 6023970 6023970 G A OR56A4 Silent p.L137L 0.45 TCGA-FR-A726-01 11 60617875 60617875 C T CCDC86 3'UTR 0.28 TCGA-FR-A726-01 11 60637362 60637362 G A ZP1 Missense_Mutation p.R224Q 0.27 tolerated(0.35) benign(0) TCGA-FR-A726-01 11 60658707 60658707 G A PRPF19 Silent p.A482A 0.27 TCGA-FR-A726-01 11 60704225 60704225 C T TMEM132A Missense_Mutation p.P974L 0.38 tolerated(0.08) benign(0.005) TCGA-FR-A726-01 11 60892526 60892526 G A CD5 Silent p.T434T 0.31 TCGA-FR-A726-01 11 61026453 61026453 G A VWCE Silent p.A854A 0.40 TCGA-FR-A726-01 11 61026454 61026454 G A VWCE Missense_Mutation p.A854V 0.39 deleterious_low_confidence(0.02) benign(0.053) TCGA-FR-A726-01 11 61070076 61070076 G A DDB1 Silent p.F1030F 0.31 TCGA-FR-A726-01 11 6129452 6129452 C T OR56B4 Silent p.F148F 0.52 TCGA-FR-A726-01 11 6129846 6129846 C T OR56B4 Missense_Mutation p.L280F 0.49 tolerated(0.12) benign(0.4) TCGA-FR-A726-01 11 61404401 61404401 G A RPLP0P2 RNA 0.40 TCGA-FR-A726-01 11 61503801 61503801 C T DAGLA Silent p.S450S 0.25 TCGA-FR-A726-01 11 61544922 61544922 G A MYRF Missense_Mutation p.E593K 0.24 deleterious(0) benign(0.297) TCGA-FR-A726-01 11 61548635 61548635 C T MYRF Silent p.A866A 0.33 TCGA-FR-A726-01 11 61630525 61630525 T A FADS2 Missense_Mutation p.F322I 0.29 deleterious(0.01) benign(0.043) TCGA-FR-A726-01 11 62290135 62290135 G A AHNAK Silent p.A3918A 0.31 TCGA-FR-A726-01 11 62356599 62356599 A G TUT1 Silent p.F97F 0.09 TCGA-FR-A726-01 11 62377131 62377131 G A EML3 Missense_Mutation p.P202S 0.34 tolerated(0.99) possibly_damaging(0.504) TCGA-FR-A726-01 11 62382162 62382162 G A ROM1 Missense_Mutation p.G303R 0.26 deleterious(0) benign(0.001) TCGA-FR-A726-01 11 62398291 62398291 G A GANAB Missense_Mutation p.P412S 0.30 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 62455485 62455485 G A LRRN4CL Nonsense_Mutation p.Q166* 0.29 TCGA-FR-A726-01 11 62554788 62554788 C T TAF6L 3'UTR 0.34 TCGA-FR-A726-01 11 62748817 62748817 C T SLC22A6 Missense_Mutation p.G279E 0.35 deleterious(0) probably_damaging(0.951) TCGA-FR-A726-01 11 62760952 62760952 G A SLC22A8 Silent p.F491F 0.26 TCGA-FR-A726-01 11 62766492 62766492 C T SLC22A8 Missense_Mutation p.G221D 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 63057850 63057850 C T SLC22A10 Silent p.A71A 0.27 TCGA-FR-A726-01 11 63176300 63176300 C T SLC22A9 Missense_Mutation p.P517L 0.31 deleterious(0) probably_damaging(0.978) TCGA-FR-A726-01 11 63233638 63233638 C T HRASLS5 Missense_Mutation p.G231R 0.30 tolerated(0.23) probably_damaging(0.912) TCGA-FR-A726-01 11 63257752 63257752 G A HRASLS5 Missense_Mutation p.P78S 0.34 tolerated_low_confidence(0.11) benign(0.025) TCGA-FR-A726-01 11 63277294 63277294 C T LGALS12 Silent p.L162L 0.32 TCGA-FR-A726-01 11 63326130 63326130 C T HRASLS2 Missense_Mutation p.E41K 0.37 deleterious(0.03) benign(0.084) TCGA-FR-A726-01 11 63487012 63487012 C T RTN3 Silent p.P346P 0.32 TCGA-FR-A726-01 11 63933228 63933228 G A MACROD1 Missense_Mutation p.P80L 0.23 tolerated(1) probably_damaging(0.997) TCGA-FR-A726-01 11 64022381 64022381 C T PLCB3 Silent p.I86I 0.35 TCGA-FR-A726-01 11 64022382 64022382 C T PLCB3 Missense_Mutation p.R87W 0.36 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 11 64037596 64037596 G A BAD 3'UTR 0.26 TCGA-FR-A726-01 11 64037604 64037604 G A BAD 3'UTR 0.39 TCGA-FR-A726-01 11 64056125 64056125 C T GPR137 Silent p.F379F 0.24 TCGA-FR-A726-01 11 64111803 64111803 C T CCDC88B Missense_Mutation p.S597F 0.33 tolerated_low_confidence(0.13) benign(0.071) TCGA-FR-A726-01 11 64112430 64112430 C T CCDC88B Missense_Mutation p.S806F 0.50 deleterious(0.01) benign(0.034) TCGA-FR-A726-01 11 64120906 64120906 G A CCDC88B Silent p.R1257R 0.43 TCGA-FR-A726-01 11 64338471 64338471 G A SLC22A11 Missense_Mutation p.G537D 0.30 tolerated(0.5) benign(0.339) TCGA-FR-A726-01 11 64369158 64369158 G A SLC22A12 3'UTR 0.50 TCGA-FR-A726-01 11 64597389 64597389 G A CDC42BPG Missense_Mutation p.P1174L 0.21 deleterious(0.02) benign(0.322) TCGA-FR-A726-01 11 64702860 64702860 C T GPHA2 Missense_Mutation p.E25K 0.24 tolerated(0.13) benign(0.013) TCGA-FR-A726-01 11 64756633 64756633 G A BATF2 Missense_Mutation p.P265S 0.39 tolerated(0.06) possibly_damaging(0.666) TCGA-FR-A726-01 11 64757095 64757095 G A BATF2 Missense_Mutation p.P111S 0.24 tolerated(0.21) benign(0.045) TCGA-FR-A726-01 11 64824935 64824935 C T NAALADL1 Missense_Mutation p.E171K 0.26 tolerated(0.88) benign(0.012) TCGA-FR-A726-01 11 64847030 64847030 G A CDCA5 Missense_Mutation p.S158F 0.34 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 11 64855506 64855506 C T ZFPL1 Missense_Mutation p.R285C 0.30 deleterious(0.01) possibly_damaging(0.854) TCGA-FR-A726-01 11 65298196 65298196 C T SCYL1 Nonsense_Mutation p.Q316* 0.35 TCGA-FR-A726-01 11 65315410 65315410 G A LTBP3 Silent p.P609P 0.26 TCGA-FR-A726-01 11 65350396 65350396 C T EHBP1L1 Silent p.A751A 0.21 TCGA-FR-A726-01 11 65822558 65822558 T A SF3B2 Silent p.I90I 0.29 TCGA-FR-A726-01 11 65827381 65827381 C T SF3B2 Silent p.Y510Y 0.29 TCGA-FR-A726-01 11 66061992 66061992 G A TMEM151A Missense_Mutation p.S92N 0.35 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 11 66062689 66062689 C T TMEM151A Silent p.P324P 0.41 TCGA-FR-A726-01 11 66109713 66109713 C T BRMS1 Splice_Site 0.27 TCGA-FR-A726-01 11 66325622 66325622 C T CTD-3074O7.2 3'Flank 0.18 TCGA-FR-A726-01 11 66358307 66358307 G A CCDC87 Missense_Mutation p.P727L 0.29 tolerated(0.41) probably_damaging(0.913) TCGA-FR-A726-01 11 66361121 66361121 C T CCS Silent p.F16F 0.14 TCGA-FR-A726-01 11 6636759 6636759 G A TPP1 Nonsense_Mutation p.Q394* 0.58 TCGA-FR-A726-01 11 6654845 6654845 C T DCHS1 Silent p.R751R 0.60 TCGA-FR-A726-01 11 6654846 6654846 C T DCHS1 Missense_Mutation p.R751Q 0.60 tolerated(0.24) benign(0.015) TCGA-FR-A726-01 11 67173401 67173401 G A TBC1D10C Silent p.K165K 0.26 TCGA-FR-A726-01 11 67223203 67223203 C T CABP4 Silent p.S103S 0.52 TCGA-FR-A726-01 11 67226214 67226214 G A CABP4 3'UTR 0.28 TCGA-FR-A726-01 11 67270048 67270048 G A PITPNM1 Missense_Mutation p.R74W 0.39 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 11 67376071 67376071 C T NDUFV1 Silent p.I68I 0.31 TCGA-FR-A726-01 11 67378014 67378014 C T NDUFV1 Silent p.L225L 0.31 TCGA-FR-A726-01 11 67379376 67379376 C T NDUFV1 Silent p.I363I 0.27 TCGA-FR-A726-01 11 67430587 67430587 G A ALDH3B2 3'UTR 0.10 TCGA-FR-A726-01 11 68174125 68174125 C T LRP5 Silent p.A645A 0.42 TCGA-FR-A726-01 11 68201281 68201281 C T LRP5 Silent p.D1325D 0.24 TCGA-FR-A726-01 11 68207275 68207275 C T LRP5 Missense_Mutation p.S1460F 0.41 deleterious(0.02) probably_damaging(0.968) TCGA-FR-A726-01 11 68525198 68525198 C T CPT1A Missense_Mutation p.D746N 0.34 tolerated(0.25) benign(0.211) TCGA-FR-A726-01 11 68529005 68529005 C T CPT1A Missense_Mutation p.E676K 0.44 tolerated(0.24) benign(0.039) TCGA-FR-A726-01 11 68696817 68696817 C G IGHMBP2 Silent p.V409V 0.06 TCGA-FR-A726-01 11 68704272 68704272 G A IGHMBP2 Missense_Mutation p.G775E 0.37 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 11 68704273 68704273 G A IGHMBP2 Silent p.G775G 0.37 TCGA-FR-A726-01 11 69514186 69514186 G A FGF19 Silent p.F165F 0.22 TCGA-FR-A726-01 11 70011663 70011663 G A ANO1 Missense_Mutation p.E680K 0.31 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 11 70333086 70333086 G A SHANK2 Silent p.S1105S 0.35 TCGA-FR-A726-01 11 70333232 70333232 C T SHANK2 Missense_Mutation p.D1057N 0.33 deleterious(0.01) benign(0.042) TCGA-FR-A726-01 11 70333366 70333366 C T SHANK2 Missense_Mutation p.G1012E 0.31 deleterious(0) benign(0.247) TCGA-FR-A726-01 11 70336312 70336312 C T SHANK2 Intron 0.54 TCGA-FR-A726-01 11 70336429 70336429 G A SHANK2 Missense_Mutation p.P836S 0.30 tolerated(0.29) benign(0.076) TCGA-FR-A726-01 11 71150069 71150069 G A DHCR7 Silent p.I229I 0.31 TCGA-FR-A726-01 11 71155112 71155112 G A DHCR7 Missense_Mutation p.S83L 0.29 tolerated(0.75) benign(0.009) TCGA-FR-A726-01 11 71249286 71249286 C T KRTAP5-8 Missense_Mutation p.S62F 0.05 deleterious_low_confidence(0.05) unknown(0) TCGA-FR-A726-01 11 71249706 71249706 C T KRTAP5-8 3'UTR 0.31 TCGA-FR-A726-01 11 71259936 71259936 C T KRTAP5-9 Missense_Mutation p.S78F 0.35 tolerated_low_confidence(0.07) unknown(0) TCGA-FR-A726-01 11 71259938 71259938 C T KRTAP5-9 Nonsense_Mutation p.Q79* 0.34 TCGA-FR-A726-01 11 71260225 71260225 G A KRTAP5-9 3'UTR 0.30 TCGA-FR-A726-01 11 71906494 71906494 G A FOLR1 Nonsense_Mutation p.W116* 0.36 TCGA-FR-A726-01 11 71932088 71932088 C T FOLR2 Missense_Mutation p.P109S 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 11 72295940 72295940 G A PDE2A Silent p.F445F 0.34 TCGA-FR-A726-01 11 72301547 72301547 G A PDE2A Silent p.P209P 0.15 TCGA-FR-A726-01 11 72945803 72945803 C T P2RY2 Missense_Mutation p.S200L 0.32 deleterious(0.02) benign(0.02) TCGA-FR-A726-01 11 72945864 72945864 C T P2RY2 Silent p.L220L 0.28 TCGA-FR-A726-01 11 72946201 72946201 C T P2RY2 Missense_Mutation p.R333C 0.31 tolerated(0.12) benign(0.002) TCGA-FR-A726-01 11 73022225 73022225 G A ARHGEF17 Missense_Mutation p.E848K 0.37 deleterious_low_confidence(0) benign(0.056) TCGA-FR-A726-01 11 73022544 73022544 C T ARHGEF17 Missense_Mutation p.S954F 0.36 deleterious_low_confidence(0) benign(0.444) TCGA-FR-A726-01 11 73102220 73102220 C T RELT Missense_Mutation p.P107S 0.32 tolerated(0.2) benign(0.018) TCGA-FR-A726-01 11 7335142 7335142 C T SYT9 Silent p.I338I 0.51 TCGA-FR-A726-01 11 73602166 73602166 C T PAAF1 Missense_Mutation p.H68Y 0.17 tolerated(0.17) benign(0.099) TCGA-FR-A726-01 11 73681078 73681078 C T DNAJB13 Silent p.L290L 0.37 TCGA-FR-A726-01 11 73689455 73689455 G A UCP2 5'UTR 0.26 TCGA-FR-A726-01 11 74053669 74053669 G A PGM2L1 Missense_Mutation p.S490F 0.31 deleterious(0) possibly_damaging(0.448) TCGA-FR-A726-01 11 74054413 74054413 G A PGM2L1 Silent p.L423L 0.25 TCGA-FR-A726-01 11 74415556 74415556 G A CHRDL2 Silent p.I242I 0.31 TCGA-FR-A726-01 11 74800027 74800027 G A OR2AT4 Silent p.S244S 0.30 TCGA-FR-A726-01 11 74862437 74862437 G A SLCO2B1 Missense_Mutation p.R4K 0.35 deleterious_low_confidence(0) benign(0.016) TCGA-FR-A726-01 11 74883485 74883485 C T SLCO2B1 Silent p.L281L 0.28 TCGA-FR-A726-01 11 74915685 74915685 C T SLCO2B1 3'UTR 0.34 TCGA-FR-A726-01 11 75153601 75153601 G A GDPD5 Missense_Mutation p.S325F 0.38 tolerated(0.08) possibly_damaging(0.47) TCGA-FR-A726-01 11 75316668 75316668 T A MAP6 Intron 0.26 TCGA-FR-A726-01 11 75316669 75316669 C A MAP6 Intron 0.26 TCGA-FR-A726-01 11 75431028 75431028 C T MOGAT2 Intron 0.27 TCGA-FR-A726-01 11 75495780 75495780 T A DGAT2 Missense_Mutation p.F80Y 0.36 tolerated(0.51) possibly_damaging(0.854) TCGA-FR-A726-01 11 75495781 75495781 C T DGAT2 Silent p.F80F 0.36 TCGA-FR-A726-01 11 75495782 75495782 C T DGAT2 Missense_Mutation p.L81F 0.39 deleterious(0.01) benign(0.302) TCGA-FR-A726-01 11 75852124 75852124 C T UVRAG Silent p.L589L 0.35 TCGA-FR-A726-01 11 76062972 76062972 G A PRKRIR Missense_Mutation p.L408F 0.26 tolerated(0.57) benign(0.013) TCGA-FR-A726-01 11 76507266 76507266 C T TSKU Silent p.L202L 0.31 TCGA-FR-A726-01 11 76804838 76804838 C T CAPN5 Silent p.S92S 0.24 TCGA-FR-A726-01 11 76892447 76892447 C T MYO7A Missense_Mutation p.R906C 0.20 deleterious(0.01) possibly_damaging(0.901) TCGA-FR-A726-01 11 76922323 76922323 C T MYO7A Silent p.L2060L 0.19 TCGA-FR-A726-01 11 76969496 76969496 G A GDPD4 Missense_Mutation p.P267S 0.36 tolerated(0.87) benign(0.013) TCGA-FR-A726-01 11 77921606 77921606 C T USP35 Missense_Mutation p.S902F 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 7817616 7817616 C T OR5P2 Missense_Mutation p.E292K 0.09 deleterious(0) possibly_damaging(0.573) TCGA-FR-A726-01 11 78381264 78381264 C T TENM4 Silent p.K2042K 0.31 TCGA-FR-A726-01 11 78383207 78383207 G A TENM4 Silent p.S1888S 0.29 TCGA-FR-A726-01 11 78383364 78383364 C T TENM4 Missense_Mutation p.R1836Q 0.31 deleterious(0.01) possibly_damaging(0.573) TCGA-FR-A726-01 11 78419526 78419526 G A TENM4 Silent p.F1363F 0.40 TCGA-FR-A726-01 11 7846642 7846642 C T OR5P3 Missense_Mutation p.R293K 0.49 tolerated(0.06) benign(0.323) TCGA-FR-A726-01 11 7949505 7949505 T A OR10A6 Missense_Mutation p.Q235H 0.52 tolerated(0.89) benign(0.058) TCGA-FR-A726-01 11 802336 802336 G A PIDD Silent p.F345F 0.56 TCGA-FR-A726-01 11 8122478 8122478 C T TUB Missense_Mutation p.L496F 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 11 8132559 8132559 C T RIC3 Missense_Mutation p.G266R 0.09 deleterious(0.04) possibly_damaging(0.881) TCGA-FR-A726-01 11 8161591 8161591 C T RIC3 Missense_Mutation p.G92R 0.08 tolerated(0.55) benign(0.073) TCGA-FR-A726-01 11 8161741 8161741 C T RIC3 Splice_Site p.X42_splice 0.55 TCGA-FR-A726-01 11 83173008 83173008 C T DLG2 Intron 0.32 TCGA-FR-A726-01 11 83177832 83177832 C T DLG2 Missense_Mutation p.G883E 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 11 83243757 83243757 C T DLG2 Silent p.S729S 0.33 TCGA-FR-A726-01 11 8494753 8494753 C T STK33 Missense_Mutation p.G99E 0.34 tolerated(0.09) possibly_damaging(0.575) TCGA-FR-A726-01 11 85989020 85989020 C T EED Missense_Mutation p.P396S 0.27 tolerated(0.06) possibly_damaging(0.719) TCGA-FR-A726-01 11 86270829 86270829 C T ME3 Missense_Mutation p.G74R 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-FR-A726-01 11 86749164 86749164 C T TMEM135 Missense_Mutation p.S26F 0.40 deleterious(0) possibly_damaging(0.851) TCGA-FR-A726-01 11 88330446 88330446 C T GRM5 Missense_Mutation p.G490E 0.30 deleterious(0) possibly_damaging(0.62) TCGA-FR-A726-01 11 89402656 89402656 G A FOLH1B RNA 0.32 TCGA-FR-A726-01 11 89431725 89431725 C T FOLH1B RNA 0.32 TCGA-FR-A726-01 11 89431793 89431793 G A FOLH1B RNA 0.26 TCGA-FR-A726-01 11 89531486 89531486 G A TRIM49 Missense_Mutation p.L391F 0.24 deleterious(0.04) benign(0.346) TCGA-FR-A726-01 11 89896831 89896831 G A NAALAD2 Intron 0.32 TCGA-FR-A726-01 11 92086095 92086095 C T FAT3 Missense_Mutation p.P273S 0.34 benign(0.408) TCGA-FR-A726-01 11 92430582 92430582 C T FAT3 Nonsense_Mutation p.R1214* 0.29 TCGA-FR-A726-01 11 92533997 92533997 A C FAT3 Missense_Mutation p.R2606S 0.20 probably_damaging(0.934) TCGA-FR-A726-01 11 92616073 92616073 G A FAT3 Missense_Mutation p.G4151R 0.39 possibly_damaging(0.894) TCGA-FR-A726-01 11 92616082 92616082 G A FAT3 Missense_Mutation p.E4154K 0.41 possibly_damaging(0.613) TCGA-FR-A726-01 11 92616245 92616245 C T FAT3 Missense_Mutation p.P4208L 0.30 benign(0) TCGA-FR-A726-01 11 92616386 92616386 G A FAT3 Missense_Mutation p.G4255E 0.32 benign(0.003) TCGA-FR-A726-01 11 92624245 92624245 C T FAT3 Missense_Mutation p.P4579L 0.38 benign(0.261) TCGA-FR-A726-01 11 92715125 92715125 G A MTNR1B Missense_Mutation p.D246N 0.52 tolerated(0.11) benign(0.072) TCGA-FR-A726-01 11 93148266 93148266 G A CCDC67 Missense_Mutation p.D542N 0.53 tolerated(0.11) benign(0.06) TCGA-FR-A726-01 11 95555040 95555040 G A CEP57 Silent p.Q235Q 0.30 TCGA-FR-A726-01 11 95712253 95712253 G A MAML2 Silent p.F1110F 0.59 TCGA-FR-A726-01 11 99786792 99786792 G A CNTN5 Missense_Mutation p.G195E 0.45 tolerated(1) possibly_damaging(0.448) TCGA-FR-A726-01 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.60 tolerated(0.09) possibly_damaging(0.653) TCGA-FR-A726-01 11 99941221 99941221 G A CNTN5 Missense_Mutation p.E410K 0.52 deleterious(0.01) probably_damaging(0.933) TCGA-FR-A726-01 12 10010202 10010202 G A CLEC2B Silent p.P36P 0.36 TCGA-FR-A726-01 12 100166732 100166732 C T ANKS1B Missense_Mutation p.E366K 0.29 deleterious(0.01) benign(0.034) TCGA-FR-A726-01 12 100166859 100166859 G A ANKS1B Silent p.T323T 0.26 TCGA-FR-A726-01 12 100173675 100173675 G A ANKS1B Missense_Mutation p.S274F 0.37 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 12 100452885 100452885 G A UHRF1BP1L Missense_Mutation p.L724F 0.08 deleterious(0.03) benign(0.325) TCGA-FR-A726-01 12 100551427 100551427 G A AC010203.1 5'Flank 0.30 TCGA-FR-A726-01 12 100806614 100806614 C T SLC17A8 Missense_Mutation p.S418F 0.31 tolerated(0.15) probably_damaging(1) TCGA-FR-A726-01 12 100934588 100934588 G A NR1H4 Missense_Mutation p.R367Q 0.22 tolerated(0.16) benign(0.413) TCGA-FR-A726-01 12 101018067 101018067 C T GAS2L3 Missense_Mutation p.S495L 0.34 tolerated(0.11) benign(0.008) TCGA-FR-A726-01 12 101413899 101413899 A C ANO4 Missense_Mutation p.E239D 0.41 tolerated(0.08) probably_damaging(0.98) TCGA-FR-A726-01 12 101413900 101413900 G A ANO4 Missense_Mutation p.E240K 0.41 tolerated(0.39) benign(0.268) TCGA-FR-A726-01 12 101433734 101433734 G A ANO4 Missense_Mutation p.G265E 0.32 tolerated(0.08) possibly_damaging(0.584) TCGA-FR-A726-01 12 101490332 101490332 C T ANO4 Missense_Mutation p.S551F 0.33 tolerated(0.21) possibly_damaging(0.761) TCGA-FR-A726-01 12 101551083 101551083 C T SLC5A8 Missense_Mutation p.G603S 0.20 tolerated(0.77) benign(0.005) TCGA-FR-A726-01 12 101577949 101577949 C T SLC5A8 Missense_Mutation p.G339R 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 101880274 101880274 A T SPIC Nonsense_Mutation p.K158* 0.39 TCGA-FR-A726-01 12 102056318 102056318 C T MYBPC1 Missense_Mutation p.P714S 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 10223784 10223784 G A CLEC1A 3'UTR 0.46 TCGA-FR-A726-01 12 103245469 103245469 G A PAH Missense_Mutation p.S303F 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 103984801 103984801 G A STAB2 Missense_Mutation p.D70N 0.35 deleterious(0.04) probably_damaging(0.971) TCGA-FR-A726-01 12 104014258 104014258 G A STAB2 Missense_Mutation p.G115E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 104126933 104126933 G A STAB2 Silent p.L1811L 0.26 TCGA-FR-A726-01 12 104473325 104473325 C T HCFC2 Silent p.S192S 0.27 TCGA-FR-A726-01 12 10462245 10462245 G A KLRD1 Missense_Mutation p.E41K 0.46 tolerated(0.16) benign(0.001) TCGA-FR-A726-01 12 105151531 105151531 G A CHST11 Missense_Mutation p.D337N 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 105289105 105289105 C T SLC41A2 Missense_Mutation p.D228N 0.24 deleterious(0.04) possibly_damaging(0.658) TCGA-FR-A726-01 12 105303500 105303500 A C SLC41A2 Nonsense_Mutation p.L199* 0.45 TCGA-FR-A726-01 12 105388503 105388503 T G C12orf45 3'UTR 0.21 TCGA-FR-A726-01 12 10588444 10588444 G A KLRC2 Missense_Mutation p.P48S 0.29 deleterious(0.02) benign(0.004) TCGA-FR-A726-01 12 106634089 106634089 G A CKAP4 Silent p.S174S 0.12 TCGA-FR-A726-01 12 106853056 106853058 TTG CT POLR3B Frame_Shift_Del p.L827Pfs*2 0.09 TCGA-FR-A726-01 12 106995060 106995060 C T RFX4 Silent p.I2I 0.48 TCGA-FR-A726-01 12 107713013 107713013 G A BTBD11 Nonsense_Mutation p.W99* 0.29 TCGA-FR-A726-01 12 108169016 108169016 G A ASCL4 Silent p.A8A 0.33 TCGA-FR-A726-01 12 108589519 108589519 C T WSCD2 5'UTR 0.23 TCGA-FR-A726-01 12 108589711 108589711 C T WSCD2 Silent p.F34F 0.31 TCGA-FR-A726-01 12 10862566 10862566 G A YBX3 Missense_Mutation p.H241Y 0.31 tolerated(0.5) possibly_damaging(0.801) TCGA-FR-A726-01 12 108642175 108642175 G A WSCD2 3'UTR 0.28 TCGA-FR-A726-01 12 108985557 108985557 C T TMEM119 Silent p.E201E 0.37 TCGA-FR-A726-01 12 109181637 109181637 G A SSH1 3'UTR 0.50 TCGA-FR-A726-01 12 109540693 109540693 C T UNG Missense_Mutation p.H195Y 0.31 tolerated(1) possibly_damaging(0.711) TCGA-FR-A726-01 12 109577297 109577297 C T ACACB Silent p.S29S 0.21 TCGA-FR-A726-01 12 10959222 10959222 G A TAS2R8 Missense_Mutation p.L120F 0.31 deleterious(0.03) probably_damaging(0.914) TCGA-FR-A726-01 12 109614056 109614056 C T ACACB Silent p.I475I 0.09 TCGA-FR-A726-01 12 10962236 10962236 G A TAS2R9 Missense_Mutation p.P147S 0.39 tolerated(0.42) benign(0) TCGA-FR-A726-01 12 109689861 109689861 G A ACACB Missense_Mutation p.R1934Q 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 109700204 109700204 C T ACACB Silent p.F2239F 0.28 TCGA-FR-A726-01 12 109717558 109717558 G A FOXN4 Missense_Mutation p.P491L 0.53 tolerated(1) benign(0.003) TCGA-FR-A726-01 12 109723196 109723196 G A FOXN4 Silent p.L272L 0.32 TCGA-FR-A726-01 12 10978278 10978278 G A TAS2R10 Silent p.I197I 0.26 TCGA-FR-A726-01 12 109844596 109844596 C T MYO1H Silent p.L306L 0.25 TCGA-FR-A726-01 12 109844640 109844640 G A MYO1H Missense_Mutation p.R321K 0.07 tolerated(0.36) benign(0.05) TCGA-FR-A726-01 12 109865347 109865347 G A MYO1H Silent p.R619R 0.33 TCGA-FR-A726-01 12 110252252 110252252 G A TRPV4 Missense_Mutation p.S117F 0.35 tolerated(0.06) benign(0.416) TCGA-FR-A726-01 12 11035070 11035070 C T PRH1 Missense_Mutation p.G89R 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 12 110429559 110429559 G A GIT2 Missense_Mutation p.S20F 0.22 deleterious(0.02) possibly_damaging(0.507) TCGA-FR-A726-01 12 11061220 11061220 G A TAS2R13 Silent p.V226V 0.28 TCGA-FR-A726-01 12 110765735 110765735 C T ATP2A2 Silent p.L336L 0.35 TCGA-FR-A726-01 12 11083619 11083619 G A PRH2 Silent p.G153G 0.18 TCGA-FR-A726-01 12 11083620 11083620 G A PRH2 Missense_Mutation p.G154S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 12 110933843 110933843 G A VPS29 Missense_Mutation p.H61Y 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 111078251 111078251 G A TCTN1 Missense_Mutation p.D303N 0.28 tolerated(0.26) benign(0.041) TCGA-FR-A726-01 12 111800797 111800797 G A FAM109A Silent p.S158S 0.18 TCGA-FR-A726-01 12 11183773 11183773 G A TAS2R31 Silent p.S54S 0.31 TCGA-FR-A726-01 12 112230442 112230442 C T ALDH2 Silent p.F313F 0.42 TCGA-FR-A726-01 12 112308072 112308072 C T MAPKAPK5 Intron 0.30 TCGA-FR-A726-01 12 112622206 112622206 G A HECTD4 Missense_Mutation p.P3376S 0.35 benign(0.003) TCGA-FR-A726-01 12 112622307 112622307 G A HECTD4 Missense_Mutation p.S3342F 0.32 probably_damaging(0.968) TCGA-FR-A726-01 12 113355613 113355613 G A OAS1 Intron 0.42 TCGA-FR-A726-01 12 113386708 113386708 C T OAS3 Nonsense_Mutation p.Q358* 0.48 TCGA-FR-A726-01 12 113400708 113400708 G A OAS3 Splice_Site p.X695_splice 0.27 TCGA-FR-A726-01 12 113425071 113425071 C T OAS2 Nonsense_Mutation p.Q136* 0.24 TCGA-FR-A726-01 12 113433098 113433098 C T OAS2 Intron 0.30 TCGA-FR-A726-01 12 113445585 113445585 G A OAS2 Missense_Mutation p.E578K 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 113545940 113545940 C T RASAL1 Missense_Mutation p.D489N 0.27 deleterious(0) possibly_damaging(0.856) TCGA-FR-A726-01 12 113612911 113612911 G A DDX54 Silent p.L268L 0.30 TCGA-FR-A726-01 12 113726016 113726016 C T TPCN1 Silent p.F633F 0.35 TCGA-FR-A726-01 12 113759031 113759031 G A SLC8B1 Silent p.P93P 0.33 TCGA-FR-A726-01 12 11421082 11421082 C T PRB3 Missense_Mutation p.G34E 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-FR-A726-01 12 11421083 11421083 C T PRB3 Splice_Site p.X34_splice 0.33 TCGA-FR-A726-01 12 11461816 11461816 C T PRB4 Missense_Mutation p.G34E 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 12 11461817 11461817 C T PRB4 Splice_Site p.X34_splice 0.07 TCGA-FR-A726-01 12 114804053 114804053 G A TBX5 Missense_Mutation p.P300L 0.31 tolerated(0.14) benign(0.021) TCGA-FR-A726-01 12 114804101 114804101 G A TBX5 Missense_Mutation p.S284L 0.35 tolerated(0.08) benign(0.025) TCGA-FR-A726-01 12 116457208 116457208 C T MED13L Missense_Mutation p.R277Q 0.17 deleterious(0) unknown(0) TCGA-FR-A726-01 12 117188072 117188072 C T RNFT2 Silent p.I170I 0.29 TCGA-FR-A726-01 12 117672415 117672415 G A NOS1 Nonsense_Mutation p.Q1098* 0.23 TCGA-FR-A726-01 12 117701773 117701773 G A NOS1 Missense_Mutation p.P715S 0.24 deleterious(0.01) probably_damaging(0.92) TCGA-FR-A726-01 12 117710195 117710195 G A NOS1 Silent p.L612L 0.32 TCGA-FR-A726-01 12 117710349 117710349 C T NOS1 Silent p.K560K 0.40 TCGA-FR-A726-01 12 117899514 117899514 C T KSR2 3'Flank 0.54 TCGA-FR-A726-01 12 117962858 117962858 C T KSR2 Missense_Mutation p.G673E 0.33 deleterious(0) probably_damaging(0.965) TCGA-FR-A726-01 12 117962971 117962971 C T KSR2 Missense_Mutation p.M635I 0.09 tolerated(0.2) benign(0.009) TCGA-FR-A726-01 12 118533424 118533424 G A VSIG10 Missense_Mutation p.S92L 0.37 tolerated(0.18) benign(0.028) TCGA-FR-A726-01 12 119583434 119583434 G A SRRM4 Silent p.Q340Q 0.35 TCGA-FR-A726-01 12 119592157 119592157 C T SRRM4 Missense_Mutation p.P501S 0.35 tolerated_low_confidence(0.05) probably_damaging(0.986) TCGA-FR-A726-01 12 119943007 119943007 C T CCDC60 Missense_Mutation p.S261L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 119943038 119943038 G A CCDC60 Silent p.V271V 0.26 TCGA-FR-A726-01 12 120180230 120180230 G A CIT Missense_Mutation p.R982C 0.35 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 12 120313961 120313961 G A CIT Silent p.F4F 0.40 TCGA-FR-A726-01 12 120510351 120510351 C T CCDC64 Missense_Mutation p.R376C 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 120575018 120575018 G A GCN1L1 Missense_Mutation p.P2257S 0.29 possibly_damaging(0.685) TCGA-FR-A726-01 12 120606033 120606033 G A GCN1L1 Silent p.L531L 0.31 TCGA-FR-A726-01 12 121434448 121434448 C T HNF1A Silent p.I404I 0.39 TCGA-FR-A726-01 12 121458649 121458649 G A OASL Silent p.S420S 0.30 TCGA-FR-A726-01 12 122398590 122398590 C T WDR66 Nonsense_Mutation p.R745* 0.42 TCGA-FR-A726-01 12 122677343 122677343 G A LRRC43 Missense_Mutation p.E381K 0.32 tolerated(0.68) benign(0.139) TCGA-FR-A726-01 12 122717404 122717404 G A VPS33A Missense_Mutation p.L518F 0.25 deleterious(0) probably_damaging(0.968) TCGA-FR-A726-01 12 12284853 12284853 G A LRP6 Missense_Mutation p.S1291F 0.39 tolerated(0.28) benign(0.005) TCGA-FR-A726-01 12 122992766 122992766 C T RSRC2 Missense_Mutation p.G345E 0.26 tolerated(0.21) unknown(0) TCGA-FR-A726-01 12 123186601 123186601 C T HCAR2 3'UTR 0.37 TCGA-FR-A726-01 12 123214860 123214860 G A HCAR1 Silent p.I9I 0.30 TCGA-FR-A726-01 12 123252104 123252104 G A DENR Missense_Mutation p.R122K 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 123645826 123645826 C T MPHOSPH9 Missense_Mutation p.E928K 0.34 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 12 123795617 123795617 G A SBNO1 Missense_Mutation p.L1094F 0.34 tolerated(0.23) benign(0.145) TCGA-FR-A726-01 12 123808290 123808290 G A SBNO1 Missense_Mutation p.P688S 0.31 tolerated(0.31) benign(0.001) TCGA-FR-A726-01 12 124069074 124069074 G A TMED2 5'Flank 0.23 TCGA-FR-A726-01 12 124358214 124358214 G A DNAH10 Missense_Mutation p.G2514E 0.18 probably_damaging(0.998) TCGA-FR-A726-01 12 124416307 124416307 C T DNAH10 Silent p.S4229S 0.26 TCGA-FR-A726-01 12 124821544 124821544 A C NCOR2 Missense_Mutation p.L1957R 0.29 probably_damaging(0.947) TCGA-FR-A726-01 12 124824877 124824877 G A NCOR2 Silent p.S1817S 0.18 TCGA-FR-A726-01 12 128899944 128899944 C T TMEM132C Silent p.A251A 0.31 TCGA-FR-A726-01 12 129429892 129429892 G A GLT1D1 Missense_Mutation p.E133K 0.27 tolerated(0.15) possibly_damaging(0.486) TCGA-FR-A726-01 12 13061677 13061677 T A GPRC5A Missense_Mutation p.F165Y 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A726-01 12 130926869 130926869 C T RIMBP2 Nonsense_Mutation p.W326* 0.09 TCGA-FR-A726-01 12 131306331 131306331 C T STX2 Silent p.V36V 0.48 TCGA-FR-A726-01 12 131488836 131488836 G A GPR133 Missense_Mutation p.R417K 0.34 tolerated(0.54) benign(0) TCGA-FR-A726-01 12 131498747 131498747 C T GPR133 Silent p.I445I 0.36 TCGA-FR-A726-01 12 131602957 131602957 C T GPR133 Missense_Mutation p.S690L 0.29 deleterious(0) probably_damaging(0.911) TCGA-FR-A726-01 12 13208605 13208605 C T KIAA1467 Missense_Mutation p.P53L 0.35 deleterious(0.04) benign(0.202) TCGA-FR-A726-01 12 132393334 132393334 C T ULK1 Silent p.A154A 0.25 TCGA-FR-A726-01 12 13240916 13240916 C T GSG1 Missense_Mutation p.D164N 0.36 deleterious(0.05) benign(0.347) TCGA-FR-A726-01 12 132446046 132446046 C T EP400 Silent p.F294F 0.24 TCGA-FR-A726-01 12 13248683 13248683 C T GSG1 Intron 0.45 TCGA-FR-A726-01 12 132498130 132498130 C T EP400 Missense_Mutation p.P1236L 0.32 unknown(0) TCGA-FR-A726-01 12 132636103 132636103 C T NOC4L Missense_Mutation p.A383V 0.37 tolerated(0.09) possibly_damaging(0.737) TCGA-FR-A726-01 12 133212545 133212545 A T POLE Missense_Mutation p.L1915H 0.39 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 12 133378528 133378528 G A GOLGA3 Missense_Mutation p.A542V 0.40 tolerated(0.07) possibly_damaging(0.894) TCGA-FR-A726-01 12 133780601 133780601 G C ZNF268 Missense_Mutation p.E777Q 0.43 deleterious(0.01) possibly_damaging(0.524) TCGA-FR-A726-01 12 13526298 13526298 C T C12orf36 Missense_Mutation p.R86Q 0.34 benign(0.417) TCGA-FR-A726-01 12 13715606 13715606 G A GRIN2B 3'UTR 0.41 TCGA-FR-A726-01 12 13716560 13716560 C T GRIN2B Silent p.V1204V 0.31 TCGA-FR-A726-01 12 13716663 13716663 C T GRIN2B Missense_Mutation p.G1170E 0.38 tolerated_low_confidence(1) benign(0.351) TCGA-FR-A726-01 12 13716888 13716888 G A GRIN2B Missense_Mutation p.S1095L 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A726-01 12 13717167 13717167 C T GRIN2B Missense_Mutation p.G1002E 0.20 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 12 13761585 13761585 C T GRIN2B Missense_Mutation p.M654I 0.30 deleterious(0.01) benign(0.252) TCGA-FR-A726-01 12 13761675 13761675 C T GRIN2B Silent p.K624K 0.33 TCGA-FR-A726-01 12 13906774 13906774 C T GRIN2B Missense_Mutation p.E163K 0.30 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 12 14659954 14659954 C T PLBD1 Missense_Mutation p.D429N 0.34 deleterious(0) probably_damaging(0.948) TCGA-FR-A726-01 12 14775011 14775011 C T GUCY2C Missense_Mutation p.M843I 0.34 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 12 14798199 14798199 C A GUCY2C Missense_Mutation p.W587C 0.21 deleterious(0) benign(0.229) TCGA-FR-A726-01 12 14798200 14798200 C T GUCY2C Nonsense_Mutation p.W587* 0.20 TCGA-FR-A726-01 12 14849277 14849277 C T GUCY2C Missense_Mutation p.E36K 0.51 tolerated(0.85) benign(0.045) TCGA-FR-A726-01 12 14849320 14849320 G A GUCY2C Silent p.S21S 0.43 TCGA-FR-A726-01 12 14849338 14849338 G A GUCY2C Silent p.F15F 0.33 TCGA-FR-A726-01 12 15091429 15091429 G A ERP27 Missense_Mutation p.P5L 0.26 tolerated(0.79) benign(0) TCGA-FR-A726-01 12 15103514 15103514 G A ARHGDIB Silent p.L45L 0.21 TCGA-FR-A726-01 12 15262027 15262027 C T RERG 3'UTR 0.33 TCGA-FR-A726-01 12 15673196 15673196 G A PTPRO Missense_Mutation p.G614E 0.39 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 12 16510579 16510579 G A MGST1 Missense_Mutation p.G56E 0.35 tolerated(0.11) possibly_damaging(0.507) TCGA-FR-A726-01 12 16753612 16753612 G A LMO3 Intron 0.39 TCGA-FR-A726-01 12 18435052 18435052 G A PIK3C2G Missense_Mutation p.E13K 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.735) TCGA-FR-A726-01 12 18443868 18443868 C T PIK3C2G Nonsense_Mutation p.Q281* 0.21 TCGA-FR-A726-01 12 18691240 18691240 G A PIK3C2G Silent p.L1117L 0.29 TCGA-FR-A726-01 12 18715664 18715664 C T PIK3C2G Silent p.F1165F 0.38 TCGA-FR-A726-01 12 18715665 18715665 C T PIK3C2G Missense_Mutation p.P1166S 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-FR-A726-01 12 18854447 18854447 G A PLCZ1 Silent p.F335F 0.35 TCGA-FR-A726-01 12 18876332 18876332 G A PLCZ1 Nonsense_Mutation p.Q94* 0.33 TCGA-FR-A726-01 12 18891278 18891278 G A CAPZA3 Missense_Mutation p.E26K 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 19282671 19282671 C T PLEKHA5 5'Flank 0.23 TCGA-FR-A726-01 12 1943837 1943837 G A LRTM2 Missense_Mutation p.D355N 0.08 tolerated(0.22) possibly_damaging(0.529) TCGA-FR-A726-01 12 1995472 1995472 C T CACNA2D4 Missense_Mutation p.G304R 0.42 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 12 20786656 20786656 C T PDE3A Missense_Mutation p.P597L 0.29 tolerated(0.16) benign(0.062) TCGA-FR-A726-01 12 20832992 20832992 C T PDE3A Silent p.I1071I 0.28 TCGA-FR-A726-01 12 20858975 20858975 G A SLCO1C1 Missense_Mutation p.G122R 0.07 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 20870110 20870110 C T SLCO1C1 Silent p.L241L 0.31 TCGA-FR-A726-01 12 20893161 20893161 C T SLCO1C1 Missense_Mutation p.S531F 0.28 deleterious(0.05) possibly_damaging(0.885) TCGA-FR-A726-01 12 20893206 20893206 G A SLCO1C1 Missense_Mutation p.G546E 0.28 tolerated(0.46) benign(0.008) TCGA-FR-A726-01 12 21028289 21028289 C T SLCO1B3 Missense_Mutation p.P283L 0.22 tolerated(1) benign(0.013) TCGA-FR-A726-01 12 21036450 21036450 G A SLCO1B3 Silent p.R532R 0.33 TCGA-FR-A726-01 12 21172182 21172182 G A SLCO1B7 Missense_Mutation p.G29E 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 21531321 21531321 G A IAPP Silent p.E77E 0.08 TCGA-FR-A726-01 12 21693398 21693398 C T GYS2 Silent p.Q585Q 0.23 TCGA-FR-A726-01 12 21919464 21919464 G A KCNJ8 Silent p.I156I 0.33 TCGA-FR-A726-01 12 22078946 22078946 G A ABCC9 Silent p.F112F 0.33 TCGA-FR-A726-01 12 22671044 22671044 G A C2CD5 Silent p.P276P 0.30 TCGA-FR-A726-01 12 22811976 22811976 C T ETNK1 Missense_Mutation p.H238Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 24736339 24736339 G A LINC00477 RNA 0.29 TCGA-FR-A726-01 12 25260969 25260969 G A LRMP Missense_Mutation p.R492Q 0.32 tolerated(1) benign(0.013) TCGA-FR-A726-01 12 25261452 25261452 C T CASC1 3'UTR 0.37 TCGA-FR-A726-01 12 25261751 25261751 C T CASC1 Missense_Mutation p.E634K 0.38 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 12 2656677 2656677 C T CACNA1C Intron 0.32 TCGA-FR-A726-01 12 2676878 2676878 C T CACNA1C Silent p.L605L 0.35 TCGA-FR-A726-01 12 2676879 2676879 T G CACNA1C Missense_Mutation p.L605R 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 12 2702384 2702384 G A CACNA1C Missense_Mutation p.E846K 0.24 tolerated(0.12) benign(0.007) TCGA-FR-A726-01 12 2705140 2705140 C T CACNA1C Missense_Mutation p.P922S 0.31 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 12 2786425 2786425 C T CACNA1C Intron 0.57 TCGA-FR-A726-01 12 2933467 2933467 G A ITFG2 3'UTR 0.42 TCGA-FR-A726-01 12 29630127 29630127 C T OVCH1 Missense_Mutation p.G429R 0.28 tolerated(0.08) benign(0.33) TCGA-FR-A726-01 12 29725135 29725135 G A TMTC1 Silent p.L479L 0.42 TCGA-FR-A726-01 12 30805971 30805971 G A IPO8 Silent p.S668S 0.08 TCGA-FR-A726-01 12 30829437 30829437 G A IPO8 Missense_Mutation p.P242S 0.25 deleterious(0) probably_damaging(0.951) TCGA-FR-A726-01 12 31566417 31566417 G A DENND5B Silent p.L878L 0.38 TCGA-FR-A726-01 12 319175 319175 C T SLC6A12 5'UTR 0.26 TCGA-FR-A726-01 12 32134962 32134962 T G KIAA1551 Missense_Mutation p.V358G 0.21 tolerated(0.16) benign(0.099) TCGA-FR-A726-01 12 32458720 32458720 G A BICD1 Silent p.L223L 0.51 TCGA-FR-A726-01 12 33030968 33030968 C T PKP2 Silent p.Q282Q 0.49 TCGA-FR-A726-01 12 33031904 33031904 C T PKP2 Missense_Mutation p.D96N 0.22 deleterious(0.04) benign(0.111) TCGA-FR-A726-01 12 33538141 33538141 C T SYT10 Missense_Mutation p.R388K 0.25 deleterious(0.04) probably_damaging(0.991) TCGA-FR-A726-01 12 33559951 33559951 G A SYT10 Nonsense_Mutation p.Q284* 0.26 TCGA-FR-A726-01 12 33559958 33559958 C T SYT10 Silent p.K281K 0.52 TCGA-FR-A726-01 12 346339 346339 C T SLC6A13 Silent p.V227V 0.31 TCGA-FR-A726-01 12 3649784 3649784 C T PRMT8 Missense_Mutation p.P30S 0.07 tolerated_low_confidence(0.14) benign(0.001) TCGA-FR-A726-01 12 3692312 3692312 C T PRMT8 Missense_Mutation p.A306V 0.37 deleterious(0) possibly_damaging(0.834) TCGA-FR-A726-01 12 3702296 3702296 T A PRMT8 Missense_Mutation p.F378Y 0.25 deleterious(0.05) possibly_damaging(0.844) TCGA-FR-A726-01 12 3788082 3788082 C T EFCAB4B Missense_Mutation p.D175N 0.28 deleterious(0.03) possibly_damaging(0.654) TCGA-FR-A726-01 12 38714488 38714488 C T ALG10B Missense_Mutation p.L299F 0.31 tolerated(0.1) benign(0.242) TCGA-FR-A726-01 12 39118655 39118655 G A CPNE8 Missense_Mutation p.S282F 0.21 deleterious(0) probably_damaging(0.926) TCGA-FR-A726-01 12 39161468 39161468 G A CPNE8 Missense_Mutation p.L182F 0.30 deleterious(0) possibly_damaging(0.903) TCGA-FR-A726-01 12 39726474 39726474 G A KIF21A Silent p.L925L 0.30 TCGA-FR-A726-01 12 40076912 40076912 G A C12orf40 Missense_Mutation p.D396N 0.34 tolerated(0.27) benign(0.086) TCGA-FR-A726-01 12 404924 404924 G A KDM5A Missense_Mutation p.P1424S 0.35 tolerated(0.22) benign(0.004) TCGA-FR-A726-01 12 40631814 40631814 C T LRRK2 Silent p.F160F 0.34 TCGA-FR-A726-01 12 40677786 40677786 G A LRRK2 Missense_Mutation p.S784N 0.42 tolerated(1) benign(0.012) TCGA-FR-A726-01 12 40702295 40702295 C T LRRK2 Missense_Mutation p.A1329V 0.35 deleterious(0) possibly_damaging(0.697) TCGA-FR-A726-01 12 40714893 40714893 C T LRRK2 Silent p.I1691I 0.32 TCGA-FR-A726-01 12 41464002 41464002 C T CNTN1 3'UTR 0.50 TCGA-FR-A726-01 12 41831565 41831565 G A PDZRN4 Intron 0.41 TCGA-FR-A726-01 12 41949548 41949548 G A PDZRN4 Missense_Mutation p.D451N 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 42840067 42840067 C T PPHLN1 Missense_Mutation p.S442F 0.27 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FR-A726-01 12 43822238 43822238 G A ADAMTS20 Missense_Mutation p.R1251C 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A726-01 12 43826148 43826148 C T ADAMTS20 Missense_Mutation p.E1019K 0.38 tolerated(0.07) probably_damaging(0.911) TCGA-FR-A726-01 12 43833512 43833512 A T ADAMTS20 Missense_Mutation p.S836T 0.39 tolerated(0.3) benign(0.359) TCGA-FR-A726-01 12 43846406 43846406 C T ADAMTS20 Missense_Mutation p.R618Q 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 45059361 45059361 G A NELL2 Silent p.Y500Y 0.27 TCGA-FR-A726-01 12 45429881 45429881 G A DBX2 Silent p.F140F 0.40 TCGA-FR-A726-01 12 46211495 46211495 C T ARID2 Missense_Mutation p.S154L 0.17 tolerated(0.22) benign(0.055) TCGA-FR-A726-01 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 12 46245343 46245343 C T ARID2 Missense_Mutation p.S1146L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.663) TCGA-FR-A726-01 12 46622946 46622946 G A SLC38A1 Silent p.L102L 0.27 TCGA-FR-A726-01 12 47163183 47163183 A T SLC38A4 Missense_Mutation p.F443Y 0.36 deleterious(0.01) possibly_damaging(0.598) TCGA-FR-A726-01 12 47172358 47172358 G A SLC38A4 Missense_Mutation p.H307Y 0.37 tolerated(0.62) benign(0.004) TCGA-FR-A726-01 12 47173604 47173604 G A SLC38A4 Missense_Mutation p.S206F 0.28 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 12 47471392 47471392 C T AMIGO2 Missense_Mutation p.R465K 0.30 tolerated(0.1) probably_damaging(0.99) TCGA-FR-A726-01 12 48057353 48057353 G A RPAP3 Missense_Mutation p.H645Y 0.32 tolerated(0.24) possibly_damaging(0.775) TCGA-FR-A726-01 12 48272866 48272866 G A VDR Missense_Mutation p.P61S 0.21 tolerated(0.12) benign(0.012) TCGA-FR-A726-01 12 4835843 4835843 C T GALNT8 Silent p.F119F 0.32 TCGA-FR-A726-01 12 48371864 48371864 C T COL2A1 Missense_Mutation p.G1014R 0.30 unknown(0) TCGA-FR-A726-01 12 48379522 48379522 G A COL2A1 Missense_Mutation p.P557S 0.33 possibly_damaging(0.698) TCGA-FR-A726-01 12 48380878 48380878 C T COL2A1 Missense_Mutation p.G450S 0.28 unknown(0) TCGA-FR-A726-01 12 48380879 48380879 C T COL2A1 Silent p.L449L 0.29 TCGA-FR-A726-01 12 48440204 48440204 A C SENP1 Missense_Mutation p.C603G 0.25 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 12 48877104 48877104 C T C12orf54 Nonsense_Mutation p.Q9* 0.25 TCGA-FR-A726-01 12 48888622 48888622 G A C12orf54 Missense_Mutation p.R95K 0.32 tolerated(1) possibly_damaging(0.567) TCGA-FR-A726-01 12 48920040 48920040 G A OR8S1 Missense_Mutation p.G209E 0.33 deleterious(0.02) benign(0.16) TCGA-FR-A726-01 12 48920047 48920047 C T OR8S1 Silent p.F211F 0.38 TCGA-FR-A726-01 12 48921837 48921837 G A OR8S1 Missense_Mutation p.G344E 0.33 probably_damaging(0.931) TCGA-FR-A726-01 12 48921838 48921838 G A OR8S1 Silent p.G344G 0.33 TCGA-FR-A726-01 12 49047744 49047744 G A KANSL2 3'UTR 0.37 TCGA-FR-A726-01 12 49047745 49047745 T A KANSL2 3'UTR 0.37 TCGA-FR-A726-01 12 49087052 49087052 G A CCNT1 Missense_Mutation p.H649Y 0.24 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-FR-A726-01 12 4919747 4919747 C T KCNA6 Silent p.S180S 0.25 TCGA-FR-A726-01 12 4920395 4920395 C T KCNA6 Silent p.F396F 0.70 TCGA-FR-A726-01 12 49390841 49390841 G A DDN Silent p.P606P 0.26 TCGA-FR-A726-01 12 49391085 49391085 C T DDN Missense_Mutation p.G525E 0.45 tolerated_low_confidence(0.57) benign(0.002) TCGA-FR-A726-01 12 49399368 49399368 G A PRKAG1 Intron 0.10 TCGA-FR-A726-01 12 49420608 49420608 G A KMT2D Silent p.A5047A 0.30 TCGA-FR-A726-01 12 49425428 49425428 G A KMT2D Missense_Mutation p.P4354S 0.46 unknown(0) TCGA-FR-A726-01 12 49432442 49432442 G A KMT2D Silent p.G2899G 0.36 TCGA-FR-A726-01 12 49443573 49443573 C T KMT2D Silent p.E1266E 0.32 TCGA-FR-A726-01 12 49742816 49742816 G A DNAJC22 Missense_Mutation p.S54N 0.37 tolerated(0.32) benign(0.002) TCGA-FR-A726-01 12 49745228 49745228 C T DNAJC22 Silent p.I323I 0.12 TCGA-FR-A726-01 12 49937726 49937726 C T KCNH3 Silent p.F284F 0.28 TCGA-FR-A726-01 12 49948156 49948156 G A KCNH3 Missense_Mutation p.R652Q 0.08 tolerated(0.41) benign(0.019) TCGA-FR-A726-01 12 49948157 49948157 G A KCNH3 Silent p.R652R 0.07 TCGA-FR-A726-01 12 49950203 49950203 C T KCNH3 Missense_Mutation p.S840F 0.34 deleterious(0.04) benign(0.212) TCGA-FR-A726-01 12 50036948 50036948 G A FMNL3 3'UTR 0.34 TCGA-FR-A726-01 12 50190050 50190050 G A NCKAP5L Silent p.D531D 0.26 TCGA-FR-A726-01 12 50367348 50367348 G A AQP6 Missense_Mutation p.G131E 0.30 deleterious(0) benign(0.299) TCGA-FR-A726-01 12 50390963 50390963 G A RACGAP1 Missense_Mutation p.P302S 0.41 deleterious(0.05) possibly_damaging(0.772) TCGA-FR-A726-01 12 51279119 51279119 C T TMPRSS12 Missense_Mutation p.P248L 0.32 deleterious(0.01) benign(0.326) TCGA-FR-A726-01 12 51318776 51318776 G A METTL7A 5'UTR 0.31 TCGA-FR-A726-01 12 51318777 51318777 G A METTL7A 5'UTR 0.33 TCGA-FR-A726-01 12 51488968 51488968 G A TFCP2 3'UTR 0.25 TCGA-FR-A726-01 12 5155192 5155192 G A KCNA5 3'UTR 0.37 TCGA-FR-A726-01 12 51585407 51585407 G A POU6F1 Missense_Mutation p.P178S 0.28 tolerated(0.12) probably_damaging(0.926) TCGA-FR-A726-01 12 51722307 51722307 C T CELA1 3'UTR 0.36 TCGA-FR-A726-01 12 51888808 51888808 G T SLC4A8 Missense_Mutation p.R950L 0.29 tolerated(0.05) benign(0.107) TCGA-FR-A726-01 12 51899696 51899696 G A SLC4A8 Missense_Mutation p.G1084E 0.32 tolerated(0.97) benign(0.001) TCGA-FR-A726-01 12 52156341 52156341 C T SCN8A Missense_Mutation p.P809S 0.32 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 12 52188400 52188400 C T SCN8A Silent p.F1590F 0.22 TCGA-FR-A726-01 12 52284571 52284571 C T ANKRD33 Missense_Mutation p.P281S 0.27 deleterious(0.03) probably_damaging(0.988) TCGA-FR-A726-01 12 52284779 52284779 C T ANKRD33 Missense_Mutation p.P350L 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A726-01 12 52345561 52345561 C T ACVR1B Missense_Mutation p.P12S 0.19 tolerated(0.41) benign(0) TCGA-FR-A726-01 12 52345562 52345562 C T ACVR1B Missense_Mutation p.P12L 0.19 tolerated(0.67) benign(0) TCGA-FR-A726-01 12 52501238 52501238 G A AC078864.1 3'Flank 0.34 TCGA-FR-A726-01 12 52585420 52585420 G A KRT80 Silent p.A89A 0.21 TCGA-FR-A726-01 12 52585421 52585421 G A KRT80 Missense_Mutation p.A89V 0.21 tolerated(0.29) benign(0) TCGA-FR-A726-01 12 52585629 52585629 G A KRT80 Missense_Mutation p.P20S 0.29 tolerated(0.34) benign(0.004) TCGA-FR-A726-01 12 52714879 52714879 G A KRT83 Missense_Mutation p.P81S 0.32 deleterious(0.02) benign(0.178) TCGA-FR-A726-01 12 52778897 52778897 G A KRT84 Missense_Mutation p.A158V 0.31 tolerated(0.79) benign(0.03) TCGA-FR-A726-01 12 52818394 52818394 G A KRT75 Silent p.F521F 0.37 TCGA-FR-A726-01 12 52824452 52824452 G A KRT75 Missense_Mutation p.S303F 0.29 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 12 52862801 52862801 G A KRT6C 3'UTR 0.35 TCGA-FR-A726-01 12 52881577 52881577 G A KRT6A Missense_Mutation p.S541F 0.36 deleterious(0.01) unknown(0) TCGA-FR-A726-01 12 52881877 52881877 C T KRT6A Missense_Mutation p.E479K 0.28 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 12 52886678 52886678 C T KRT6A Missense_Mutation p.G99R 0.19 deleterious(0.04) unknown(0) TCGA-FR-A726-01 12 52913674 52913674 G A KRT5 Missense_Mutation p.P136L 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A726-01 12 52941650 52941650 C T KRT71 Silent p.V365V 0.32 TCGA-FR-A726-01 12 52960746 52960746 C T KRT74 3'UTR 0.31 TCGA-FR-A726-01 12 52981423 52981423 C T KRT72 Silent p.E434E 0.20 TCGA-FR-A726-01 12 53011952 53011952 C T KRT73 Silent p.V119V 0.32 TCGA-FR-A726-01 12 53072532 53072532 G A KRT1 Silent p.F200F 0.33 TCGA-FR-A726-01 12 53096776 53096776 G A KRT77 Missense_Mutation p.P148L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 12 53097193 53097193 G A KRT77 Missense_Mutation p.S9F 0.27 tolerated(0.14) unknown(0) TCGA-FR-A726-01 12 53207522 53207522 C T KRT4 Silent p.G107G 0.07 TCGA-FR-A726-01 12 53207523 53207523 C T KRT4 Missense_Mutation p.G107E 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 53217722 53217722 G A KRT79 Silent p.L365L 0.36 TCGA-FR-A726-01 12 53227667 53227667 G A KRT79 Silent p.P126P 0.30 TCGA-FR-A726-01 12 53232878 53232878 G A KRT78 3'UTR 0.33 TCGA-FR-A726-01 12 53413721 53413721 C T EIF4B Missense_Mutation p.P130S 0.25 tolerated(0.15) unknown(0) TCGA-FR-A726-01 12 53509415 53509415 C T SOAT2 Missense_Mutation p.R229C 0.38 tolerated(0.19) possibly_damaging(0.9) TCGA-FR-A726-01 12 53607418 53607418 G A RARG Silent p.L294L 0.28 TCGA-FR-A726-01 12 53670485 53670485 G A ESPL1 Silent p.A594A 0.27 TCGA-FR-A726-01 12 53722076 53722076 G A SP7 Missense_Mutation p.P384S 0.25 tolerated_low_confidence(0.2) benign(0.145) TCGA-FR-A726-01 12 53722077 53722077 G A SP7 Silent p.P383P 0.29 TCGA-FR-A726-01 12 53722096 53722096 C T SP7 Missense_Mutation p.G377E 0.29 tolerated(0.53) benign(0.015) TCGA-FR-A726-01 12 53722254 53722254 G A SP7 Silent p.F324F 0.24 TCGA-FR-A726-01 12 53776314 53776314 C T SP1 Nonsense_Mutation p.Q195* 0.34 TCGA-FR-A726-01 12 53875903 53875903 G A MAP3K12 Missense_Mutation p.S801F 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FR-A726-01 12 53876911 53876911 C T MAP3K12 Missense_Mutation p.G559E 0.27 tolerated(0.14) benign(0.352) TCGA-FR-A726-01 12 54338960 54338960 A G HOXC13 Missense_Mutation p.T305A 0.10 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 12 54379561 54379561 C T HOXC10 Missense_Mutation p.P173L 0.39 tolerated(0.24) benign(0.218) TCGA-FR-A726-01 12 54575997 54575997 G A SMUG1 Silent p.V232V 0.37 TCGA-FR-A726-01 12 54757016 54757016 C T GPR84 Missense_Mutation p.R207Q 0.25 tolerated(0.62) benign(0.025) TCGA-FR-A726-01 12 54855949 54855949 C T GTSF1 Nonsense_Mutation p.W112* 0.27 TCGA-FR-A726-01 12 54894407 54894407 C T NCKAP1L Missense_Mutation p.R102W 0.32 deleterious(0) possibly_damaging(0.893) TCGA-FR-A726-01 12 54902250 54902250 G A NCKAP1L Silent p.R147R 0.30 TCGA-FR-A726-01 12 54910690 54910690 C T NCKAP1L Missense_Mutation p.H337Y 0.31 deleterious(0.02) benign(0.309) TCGA-FR-A726-01 12 54963046 54963046 C T PDE1B Silent p.A102A 0.31 TCGA-FR-A726-01 12 55038497 55038497 C T DCD Silent p.%3D 0.16 TCGA-FR-A726-01 12 55252086 55252086 C T MUCL1 3'UTR 0.27 TCGA-FR-A726-01 12 55357661 55357661 C T TESPA1 Missense_Mutation p.D174N 0.37 tolerated(0.12) benign(0.02) TCGA-FR-A726-01 12 55367343 55367343 G A TESPA1 Intron 0.24 TCGA-FR-A726-01 12 55524500 55524500 G A OR9K2 Silent p.R316R 0.27 TCGA-FR-A726-01 12 55615086 55615086 C T OR10A7 Missense_Mutation p.S93F 0.31 deleterious(0) probably_damaging(0.939) TCGA-FR-A726-01 12 55688977 55688977 C T OR6C6 Missense_Mutation p.G14R 0.11 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-FR-A726-01 12 55795205 55795205 C T OR6C65 Missense_Mutation p.A298V 0.24 deleterious_low_confidence(0.03) benign(0.078) TCGA-FR-A726-01 12 55846379 55846379 C A OR6C2 Missense_Mutation p.L128I 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A726-01 12 55846490 55846490 G A OR6C2 Missense_Mutation p.E165K 0.33 tolerated_low_confidence(0.15) benign(0.32) TCGA-FR-A726-01 12 55846809 55846809 G A OR6C2 Missense_Mutation p.G271E 0.45 tolerated_low_confidence(0.05) possibly_damaging(0.486) TCGA-FR-A726-01 12 55945126 55945126 G A OR6C4 Missense_Mutation p.G39E 0.30 deleterious_low_confidence(0) possibly_damaging(0.554) TCGA-FR-A726-01 12 56076015 56076015 G A METTL7B Silent p.E159E 0.25 TCGA-FR-A726-01 12 56101383 56101383 G A ITGA7 Silent p.F28F 0.32 TCGA-FR-A726-01 12 56230950 56230950 G A MMP19 Missense_Mutation p.S466F 0.29 deleterious(0) possibly_damaging(0.447) TCGA-FR-A726-01 12 56233413 56233413 G A MMP19 Silent p.A211A 0.30 TCGA-FR-A726-01 12 56296055 56296055 G A WIBG Silent p.T72T 0.28 TCGA-FR-A726-01 12 56365000 56365000 C T CDK2 Missense_Mutation p.P254L 0.29 tolerated(0.14) benign(0.001) TCGA-FR-A726-01 12 56554348 56554348 C T MYL6 Intron 0.37 TCGA-FR-A726-01 12 56563627 56563629 CTT - SMARCC2 In_Frame_Del p.K796del 0.35 TCGA-FR-A726-01 12 56625161 56625161 G A SLC39A5 Missense_Mutation p.E35K 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A726-01 12 56720625 56720625 G A PAN2 Silent p.A346A 0.26 TCGA-FR-A726-01 12 5672620 5672620 C T ANO2 Missense_Mutation p.E948K 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-FR-A726-01 12 56737136 56737136 G A STAT2 3'UTR 0.21 TCGA-FR-A726-01 12 56737218 56737218 G A STAT2 Silent p.P837P 0.30 TCGA-FR-A726-01 12 5674796 5674796 C T ANO2 Silent p.P885P 0.28 TCGA-FR-A726-01 12 56755257 56755257 G A APOF Missense_Mutation p.L245F 0.33 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 12 56812125 56812125 G A TIMELESS Missense_Mutation p.P1083S 0.39 deleterious(0.04) possibly_damaging(0.9) TCGA-FR-A726-01 12 56814782 56814782 G A TIMELESS Missense_Mutation p.S1002L 0.36 tolerated(0.15) benign(0.005) TCGA-FR-A726-01 12 5685148 5685148 G A ANO2 Missense_Mutation p.P825S 0.21 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 56975915 56975915 C T RBMS2 Silent p.S284S 0.42 TCGA-FR-A726-01 12 57005823 57005823 G A BAZ2A Missense_Mutation p.S450F 0.22 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 12 57064070 57064070 G A PTGES3 Missense_Mutation p.R122C 0.28 deleterious(0.03) benign(0.007) TCGA-FR-A726-01 12 57110568 57110568 G A NACA Intron 0.28 TCGA-FR-A726-01 12 57111454 57111454 G A NACA Intron 0.36 TCGA-FR-A726-01 12 57324083 57324083 C T SDR9C7 Missense_Mutation p.G163S 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 57502041 57502041 G A STAT6 Silent p.V7V 0.26 TCGA-FR-A726-01 12 5756937 5756937 G A ANO2 Missense_Mutation p.R526C 0.48 deleterious(0) probably_damaging(0.927) TCGA-FR-A726-01 12 57574942 57574942 C T LRP1 Missense_Mutation p.H1844Y 0.34 benign(0.004) TCGA-FR-A726-01 12 57604142 57604142 C T LRP1 Silent p.F4211F 0.37 TCGA-FR-A726-01 12 57604541 57604541 C T LRP1 Silent p.P4265P 0.37 TCGA-FR-A726-01 12 57843323 57843323 G A INHBC Missense_Mutation p.G193R 0.23 deleterious(0.03) benign(0.25) TCGA-FR-A726-01 12 57843474 57843474 G A INHBC Missense_Mutation p.G243E 0.27 tolerated(0.36) benign(0.001) TCGA-FR-A726-01 12 57849981 57849981 C T INHBE Missense_Mutation p.P135S 0.33 tolerated(0.3) probably_damaging(0.927) TCGA-FR-A726-01 12 57857781 57857781 G A GLI1 Splice_Site p.X34_splice 0.32 TCGA-FR-A726-01 12 57872925 57872925 G A ARHGAP9 Missense_Mutation p.P89S 0.31 tolerated(0.23) benign(0.009) TCGA-FR-A726-01 12 57961348 57961348 G A KIF5A Missense_Mutation p.E221K 0.09 tolerated(0.09) benign(0.068) TCGA-FR-A726-01 12 58010765 58010765 C T ARHGEF25 3'UTR 0.38 TCGA-FR-A726-01 12 58018649 58018649 C T SLC26A10 Missense_Mutation p.L410F 0.32 tolerated(0.09) benign(0.065) TCGA-FR-A726-01 12 58191622 58191622 T C AVIL 3'Flank 0.28 TCGA-FR-A726-01 12 5860076 5860076 G A ANO2 Silent p.F368F 0.38 TCGA-FR-A726-01 12 5860123 5860123 C T ANO2 Missense_Mutation p.E353K 0.30 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 12 6059003 6059003 G A VWF Silent p.V2734V 0.09 TCGA-FR-A726-01 12 6061048 6061048 C T VWF Missense_Mutation p.G2706D 0.39 deleterious(0) probably_damaging(0.959) TCGA-FR-A726-01 12 6061606 6061606 C T VWF Missense_Mutation p.R2689K 0.33 tolerated(0.3) benign(0.364) TCGA-FR-A726-01 12 6103226 6103226 G A VWF Missense_Mutation p.P2134S 0.26 tolerated(0.59) benign(0) TCGA-FR-A726-01 12 6122766 6122766 G A VWF Missense_Mutation p.A1834V 0.28 tolerated(0.24) probably_damaging(0.918) TCGA-FR-A726-01 12 6161810 6161810 C T VWF Missense_Mutation p.M695I 0.13 tolerated(0.06) benign(0.007) TCGA-FR-A726-01 12 6182788 6182788 G A VWF Missense_Mutation p.P332S 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 12 62719710 62719710 C T USP15 Missense_Mutation p.P227S 0.24 tolerated(1) benign(0.001) TCGA-FR-A726-01 12 62892708 62892708 C T MON2 Missense_Mutation p.L149F 0.15 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 12 62919818 62919818 G C MON2 Missense_Mutation p.E446Q 0.27 tolerated(0.3) benign(0.026) TCGA-FR-A726-01 12 62996809 62996809 G T C12orf61 Missense_Mutation p.P104T 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-FR-A726-01 12 6428093 6428093 G A PLEKHG6 Intron 0.21 TCGA-FR-A726-01 12 64383850 64383850 A T SRGAP1 Nonsense_Mutation p.K142* 0.26 TCGA-FR-A726-01 12 64616012 64616012 C T C12orf66 Silent p.G2G 0.36 TCGA-FR-A726-01 12 6464002 6464002 T G SCNN1A Silent p.R445R 0.26 TCGA-FR-A726-01 12 65471608 65471608 G A WIF1 Silent p.S105S 0.19 TCGA-FR-A726-01 12 65471609 65471609 G A WIF1 Missense_Mutation p.S105F 0.19 deleterious(0.04) possibly_damaging(0.854) TCGA-FR-A726-01 12 65847568 65847568 C T MSRB3 Missense_Mutation p.S125F 0.34 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 12 662760 662760 G A B4GALNT3 Silent p.R557R 0.34 TCGA-FR-A726-01 12 6649747 6649747 G A IFFO1 Missense_Mutation p.P532S 0.27 deleterious(0.03) probably_damaging(0.922) TCGA-FR-A726-01 12 66747243 66747243 C T GRIP1 Missense_Mutation p.G986E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 66747244 66747244 C T GRIP1 Missense_Mutation p.G986R 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 66786570 66786570 C T GRIP1 Missense_Mutation p.R667Q 0.21 deleterious(0.04) benign(0.35) TCGA-FR-A726-01 12 66909535 66909535 C T GRIP1 Silent p.T196T 0.37 TCGA-FR-A726-01 12 674431 674431 C T NINJ2 Silent p.L179L 0.27 TCGA-FR-A726-01 12 674587 674587 G A NINJ2 Intron 0.25 TCGA-FR-A726-01 12 6749558 6749558 G A ACRBP Missense_Mutation p.P403L 0.27 tolerated(0.12) benign(0.032) TCGA-FR-A726-01 12 6772291 6772291 C T ING4 5'UTR 0.33 TCGA-FR-A726-01 12 6788638 6788638 G A ZNF384 Missense_Mutation p.P17S 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-FR-A726-01 12 6804719 6804719 C T PIANP Missense_Mutation p.G235E 0.30 tolerated_low_confidence(0.14) probably_damaging(0.969) TCGA-FR-A726-01 12 68595658 68595658 G A IL26 Silent p.S161S 0.35 TCGA-FR-A726-01 12 6882375 6882375 G A LAG3 Missense_Mutation p.G26R 0.22 tolerated(0.26) benign(0.006) TCGA-FR-A726-01 12 69127276 69127276 C T NUP107 Missense_Mutation p.P716S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 6936219 6936219 C T GPR162 Silent p.S539S 0.30 TCGA-FR-A726-01 12 6955051 6955051 C T CDCA3 3'Flank 0.32 TCGA-FR-A726-01 12 70072651 70072651 C T BEST3 Silent p.R168R 0.32 TCGA-FR-A726-01 12 70150318 70150318 G A RAB3IP Missense_Mutation p.D145N 0.39 tolerated(0.12) benign(0.022) TCGA-FR-A726-01 12 7031521 7031521 C T ENO2 Silent p.A397A 0.09 TCGA-FR-A726-01 12 7031522 7031522 C T ENO2 Missense_Mutation p.P398S 0.09 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-FR-A726-01 12 7055878 7055878 C T PTPN6 5'Flank 0.29 TCGA-FR-A726-01 12 7067081 7067081 G A PTPN6 Splice_Site p.X403_splice 0.31 TCGA-FR-A726-01 12 70824287 70824287 C T KCNMB4 Missense_Mutation p.R163C 0.41 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 12 70918270 70918270 C T PTPRB Silent p.V2202V 0.50 TCGA-FR-A726-01 12 70918340 70918340 C T PTPRB Missense_Mutation p.R2179K 0.28 deleterious(0.01) possibly_damaging(0.713) TCGA-FR-A726-01 12 70948937 70948937 T C PTPRB Intron 0.30 TCGA-FR-A726-01 12 70990095 70990095 G A PTPRB Missense_Mutation p.P331L 0.32 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 12 71148105 71148105 C T PTPRR Intron 0.12 TCGA-FR-A726-01 12 71314247 71314247 C T PTPRR 5'UTR 0.33 TCGA-FR-A726-01 12 7177620 7177620 C T C1S Missense_Mutation p.R578C 0.49 tolerated(0.17) possibly_damaging(0.806) TCGA-FR-A726-01 12 71834033 71834033 C T LGR5 Missense_Mutation p.S58L 0.28 tolerated(0.06) benign(0.129) TCGA-FR-A726-01 12 72008402 72008402 C T ZFC3H1 Silent p.V1813V 0.35 TCGA-FR-A726-01 12 72025788 72025788 G A ZFC3H1 Silent p.T1108T 0.29 TCGA-FR-A726-01 12 72091239 72091239 T C TMEM19 Missense_Mutation p.W188R 0.29 deleterious(0) probably_damaging(0.961) TCGA-FR-A726-01 12 72274263 72274263 T G TBC1D15 Silent p.V73V 0.33 TCGA-FR-A726-01 12 72343377 72343377 G A TPH2 Missense_Mutation p.D184N 0.30 deleterious(0) possibly_damaging(0.784) TCGA-FR-A726-01 12 72425454 72425454 G A TPH2 Missense_Mutation p.M484I 0.24 tolerated(0.74) benign(0.004) TCGA-FR-A726-01 12 7244215 7244215 G A C1R Missense_Mutation p.P21S 0.31 tolerated(0.17) benign(0.031) TCGA-FR-A726-01 12 7244216 7244216 G A C1R Silent p.I20I 0.31 TCGA-FR-A726-01 12 7249075 7249075 C T C1RL Missense_Mutation p.G459D 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 72680625 72680625 G A TRHDE Missense_Mutation p.G315E 0.34 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 12 72863576 72863576 G A TRHDE Missense_Mutation p.E407K 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 72863621 72863621 G A TRHDE Missense_Mutation p.D422N 0.40 tolerated(0.07) possibly_damaging(0.904) TCGA-FR-A726-01 12 7302208 7302208 G A CLSTN3 Missense_Mutation p.E722K 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 73046870 73046870 G A TRHDE Missense_Mutation p.R928Q 0.36 tolerated(0.09) benign(0.32) TCGA-FR-A726-01 12 7362936 7362936 C T PEX5 3'UTR 0.46 TCGA-FR-A726-01 12 7470622 7470622 G A ACSM4 Silent p.R255R 0.26 TCGA-FR-A726-01 12 7531843 7531843 C T CD163L1 Missense_Mutation p.G701E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 7548952 7548952 C T CD163L1 Missense_Mutation p.E597K 0.31 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 12 75728488 75728488 C T GLIPR1L1 5'UTR 0.31 TCGA-FR-A726-01 12 75756960 75756960 G A GLIPR1L1 Silent p.K200K 0.32 TCGA-FR-A726-01 12 7635987 7635987 C T CD163 Missense_Mutation p.E1022K 0.34 deleterious(0.01) probably_damaging(0.947) TCGA-FR-A726-01 12 7637852 7637852 C T CD163 Silent p.G873G 0.38 TCGA-FR-A726-01 12 7637937 7637937 C T CD163 Missense_Mutation p.G845E 0.27 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 12 7651778 7651778 G A CD163 Missense_Mutation p.S155F 0.08 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 12 76740252 76740252 G A BBS10 Missense_Mutation p.P505S 0.06 tolerated(0.3) benign(0.021) TCGA-FR-A726-01 12 78531116 78531116 C T NAV3 Missense_Mutation p.S1534L 0.23 deleterious(0) possibly_damaging(0.462) TCGA-FR-A726-01 12 78582433 78582433 C T NAV3 Silent p.S1955S 0.30 TCGA-FR-A726-01 12 7882179 7882179 G A CLEC4C 3'UTR 0.32 TCGA-FR-A726-01 12 7882279 7882279 G A CLEC4C Silent p.F185F 0.26 TCGA-FR-A726-01 12 7945656 7945656 G A NANOG Missense_Mutation p.E88K 0.43 tolerated(0.08) benign(0.314) TCGA-FR-A726-01 12 79689871 79689871 C T SYT1 Missense_Mutation p.A166V 0.39 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 12 8023495 8023495 G A SLC2A14 5'UTR 0.23 TCGA-FR-A726-01 12 80651781 80651781 C T OTOGL Missense_Mutation p.L621F 0.28 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 12 80663926 80663926 C T OTOGL Missense_Mutation p.P828L 0.34 deleterious(0.04) benign(0.17) TCGA-FR-A726-01 12 80730315 80730315 G A OTOGL Missense_Mutation p.E1566K 0.29 tolerated(0.44) benign(0.389) TCGA-FR-A726-01 12 80733024 80733024 C T OTOGL Missense_Mutation p.S1668F 0.28 tolerated(0.2) benign(0.365) TCGA-FR-A726-01 12 80749641 80749641 G A OTOGL Missense_Mutation p.E1898K 0.28 tolerated(0.4) benign(0.022) TCGA-FR-A726-01 12 80762046 80762046 C T OTOGL Missense_Mutation p.S2182F 0.42 deleterious(0) possibly_damaging(0.589) TCGA-FR-A726-01 12 81101495 81101495 G A MYF6 5'UTR 0.38 TCGA-FR-A726-01 12 81472039 81472039 G A ACSS3 Missense_Mutation p.G47E 0.42 deleterious_low_confidence(0) benign(0.318) TCGA-FR-A726-01 12 81472040 81472040 G A ACSS3 Silent p.G47G 0.45 TCGA-FR-A726-01 12 81647098 81647098 C T ACSS3 Missense_Mutation p.H578Y 0.28 deleterious(0) possibly_damaging(0.713) TCGA-FR-A726-01 12 81719646 81719646 C T PPFIA2 Missense_Mutation p.G851D 0.32 deleterious(0.04) benign(0.419) TCGA-FR-A726-01 12 81746986 81746986 C T PPFIA2 Missense_Mutation p.D636N 0.19 tolerated(0.05) possibly_damaging(0.804) TCGA-FR-A726-01 12 81762936 81762936 C T PPFIA2 Missense_Mutation p.R435K 0.20 tolerated(0.09) possibly_damaging(0.474) TCGA-FR-A726-01 12 81851589 81851589 C T PPFIA2 Silent p.K120K 0.22 TCGA-FR-A726-01 12 82147977 82147977 C T PPFIA2 Silent p.T8T 0.33 TCGA-FR-A726-01 12 82871078 82871078 C T METTL25 Missense_Mutation p.P556S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 12 8290887 8290887 G A CLEC4A 3'UTR 0.34 TCGA-FR-A726-01 12 8330138 8330138 C T ZNF705A Silent p.L288L 0.17 TCGA-FR-A726-01 12 83526040 83526040 C T TMTC2 Missense_Mutation p.L795F 0.31 deleterious(0.04) possibly_damaging(0.886) TCGA-FR-A726-01 12 8374179 8374179 T C FAM90A1 3'UTR 0.23 TCGA-FR-A726-01 12 8374307 8374307 G A FAM90A1 3'UTR 0.17 TCGA-FR-A726-01 12 8375311 8375311 G A FAM90A1 Missense_Mutation p.R168C 0.12 tolerated(0.1) benign(0.007) TCGA-FR-A726-01 12 8376074 8376074 C T FAM90A1 Missense_Mutation p.G135R 0.14 deleterious(0.02) benign(0.276) TCGA-FR-A726-01 12 8377459 8377459 T G FAM90A1 5'UTR 0.16 TCGA-FR-A726-01 12 85500302 85500302 C T LRRIQ1 Missense_Mutation p.L1096F 0.35 deleterious(0.01) possibly_damaging(0.747) TCGA-FR-A726-01 12 8628803 8628803 G A CLEC6A Nonsense_Mutation p.W151* 0.30 TCGA-FR-A726-01 12 86373155 86373155 G A MGAT4C Missense_Mutation p.P450L 0.10 tolerated(0.3) benign(0.002) TCGA-FR-A726-01 12 86373156 86373156 G A MGAT4C Missense_Mutation p.P450S 0.10 tolerated(1) benign(0.002) TCGA-FR-A726-01 12 86373206 86373206 C T MGAT4C Missense_Mutation p.G433E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 12 88379651 88379651 C T C12orf50 Missense_Mutation p.E368K 0.35 tolerated(0.11) possibly_damaging(0.628) TCGA-FR-A726-01 12 88479925 88479925 G A CEP290 Missense_Mutation p.P1443L 0.22 probably_damaging(0.999) TCGA-FR-A726-01 12 8975239 8975239 C T A2ML1 5'UTR 0.29 TCGA-FR-A726-01 12 8990109 8990109 C T A2ML1 Nonsense_Mutation p.R268* 0.38 TCGA-FR-A726-01 12 89984947 89984947 G A ATP2B1 Silent p.I1159I 0.21 TCGA-FR-A726-01 12 90024356 90024356 C G ATP2B1 Missense_Mutation p.G285A 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 12 9085217 9085217 C T PHC1 Silent p.L388L 0.18 TCGA-FR-A726-01 12 91396268 91396268 G A EPYC Silent p.S25S 0.11 TCGA-FR-A726-01 12 91396269 91396269 G T EPYC Missense_Mutation p.S25Y 0.10 deleterious(0.04) benign(0.027) TCGA-FR-A726-01 12 91449643 91449643 G A KERA Missense_Mutation p.P139L 0.28 tolerated(0.09) benign(0.122) TCGA-FR-A726-01 12 91502045 91502045 G A LUM Missense_Mutation p.H238Y 0.33 deleterious(0.04) possibly_damaging(0.708) TCGA-FR-A726-01 12 9262586 9262586 C T A2M Missense_Mutation p.E184K 0.36 tolerated(0.38) benign(0.014) TCGA-FR-A726-01 12 9264799 9264799 G A A2M Missense_Mutation p.R147C 0.28 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 12 9303316 9303316 G T PZP Silent p.S1436S 0.22 TCGA-FR-A726-01 12 9309839 9309839 G A PZP Missense_Mutation p.S1161F 0.33 deleterious(0) possibly_damaging(0.505) TCGA-FR-A726-01 12 95905681 95905681 C T METAP2 Silent p.I325I 0.26 TCGA-FR-A726-01 12 96180875 96180875 C T NTN4 Missense_Mutation p.V143M 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-FR-A726-01 12 96429169 96429169 G A LTA4H Silent p.V43V 0.32 TCGA-FR-A726-01 12 96617374 96617374 C T ELK3 Silent p.F10F 0.44 TCGA-FR-A726-01 12 977134 977134 C T WNK1 Intron 0.32 TCGA-FR-A726-01 12 977218 977218 C T WNK1 Intron 0.34 TCGA-FR-A726-01 12 994787 994787 C T WNK1 Missense_Mutation p.P1606L 0.35 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FR-A726-01 13 100204460 100204460 C T TM9SF2 Silent p.L456L 0.42 TCGA-FR-A726-01 13 102029367 102029367 C T NALCN Nonsense_Mutation p.W139* 0.43 TCGA-FR-A726-01 13 102235602 102235602 T C ITGBL1 Missense_Mutation p.V255A 0.05 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-FR-A726-01 13 103450924 103450924 C T KDELC1 Missense_Mutation p.E33K 0.10 tolerated(0.8) benign(0.002) TCGA-FR-A726-01 13 103718278 103718278 C T SLC10A2 Missense_Mutation p.G108R 0.11 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 13 103718345 103718345 G A SLC10A2 Silent p.I85I 0.12 TCGA-FR-A726-01 13 106124905 106124905 G A DAOA Missense_Mutation p.G51E 0.13 tolerated_low_confidence(0.06) probably_damaging(0.969) TCGA-FR-A726-01 13 106124932 106124932 G A DAOA Missense_Mutation p.G60E 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FR-A726-01 13 108518339 108518339 C T FAM155A Silent p.G202G 0.40 TCGA-FR-A726-01 13 109507872 109507872 C T MYO16 Nonsense_Mutation p.Q422* 0.54 TCGA-FR-A726-01 13 109661375 109661375 G A MYO16 Missense_Mutation p.G836E 0.34 tolerated(0.13) benign(0.098) TCGA-FR-A726-01 13 109704667 109704667 C T MYO16 Silent p.I942I 0.08 TCGA-FR-A726-01 13 110804749 110804749 C T COL4A1 Silent p.G1620G 0.11 TCGA-FR-A726-01 13 110829347 110829347 T C COL4A1 Silent p.G918G 0.11 TCGA-FR-A726-01 13 111080918 111080918 C T COL4A2 Silent p.F155F 0.25 TCGA-FR-A726-01 13 111082781 111082781 C T COL4A2 Nonsense_Mutation p.Q195* 0.39 TCGA-FR-A726-01 13 111372079 111372079 C T ING1 Silent p.L357L 0.09 TCGA-FR-A726-01 13 111935676 111935676 C T ARHGEF7 Missense_Mutation p.P660L 0.50 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 13 111980541 111980541 C T TEX29 Missense_Mutation p.P24S 0.50 deleterious(0.04) possibly_damaging(0.803) TCGA-FR-A726-01 13 113760188 113760188 T C F7 Silent p.L11L 0.55 TCGA-FR-A726-01 13 113965131 113965131 C T LAMP1 Missense_Mutation p.H171Y 0.09 tolerated(0.93) benign(0.014) TCGA-FR-A726-01 13 114083394 114083394 G A ADPRHL1 Silent p.S173S 0.29 TCGA-FR-A726-01 13 19748072 19748072 C T TUBA3C Silent p.L428L 0.36 TCGA-FR-A726-01 13 21006413 21006413 G A CRYL1 Missense_Mutation p.P154L 0.27 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FR-A726-01 13 21357775 21357775 G A XPO4 3'UTR 0.37 TCGA-FR-A726-01 13 21563248 21563248 G A LATS2 Missense_Mutation p.P224L 0.12 tolerated_low_confidence(0.13) benign(0.002) TCGA-FR-A726-01 13 21565416 21565416 G A LATS2 Missense_Mutation p.S157F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 13 22095463 22095463 G A MICU2 Missense_Mutation p.P173L 0.40 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 13 23907026 23907026 G A SACS Silent p.F3663F 0.33 TCGA-FR-A726-01 13 23911980 23911980 A C SACS Missense_Mutation p.F2012C 0.41 probably_damaging(0.997) TCGA-FR-A726-01 13 23929800 23929800 G A SACS Silent p.S317S 0.28 TCGA-FR-A726-01 13 23985393 23985393 G A SACS 5'UTR 0.09 TCGA-FR-A726-01 13 24443553 24443553 G A MIPEP Missense_Mutation p.P274L 0.30 deleterious(0) possibly_damaging(0.899) TCGA-FR-A726-01 13 24466002 24466002 C T C1QTNF9B Missense_Mutation p.G143E 0.24 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 13 24466084 24466084 C T C1QTNF9B Missense_Mutation p.G116R 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 24466120 24466120 C T C1QTNF9B Missense_Mutation p.G104R 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 24864807 24864807 C T SPATA13 Silent p.I955I 0.27 TCGA-FR-A726-01 13 24895942 24895942 C T C1QTNF9 3'UTR 0.30 TCGA-FR-A726-01 13 25009347 25009347 G A PARP4 Missense_Mutation p.S1311F 0.39 deleterious(0.02) benign(0.361) TCGA-FR-A726-01 13 25034155 25034155 G A PARP4 Silent p.T751T 0.27 TCGA-FR-A726-01 13 25262561 25262561 G A ATP12A Missense_Mutation p.M111I 0.37 deleterious(0.05) benign(0.099) TCGA-FR-A726-01 13 25264765 25264765 G A ATP12A Silent p.G235G 0.10 TCGA-FR-A726-01 13 25356041 25356041 G A RNF17 Silent p.V190V 0.37 TCGA-FR-A726-01 13 25362126 25362126 G A RNF17 Silent p.R204R 0.35 TCGA-FR-A726-01 13 25373700 25373700 T A RNF17 Missense_Mutation p.S523T 0.39 tolerated(0.16) probably_damaging(0.95) TCGA-FR-A726-01 13 25433214 25433214 G A RNF17 Nonsense_Mutation p.W1229* 0.21 TCGA-FR-A726-01 13 25672305 25672305 G A PABPC3 3'UTR 0.32 TCGA-FR-A726-01 13 26156085 26156085 G A ATP8A2 Silent p.A712A 0.33 TCGA-FR-A726-01 13 26967641 26967641 C T CDK8 Missense_Mutation p.P262S 0.36 deleterious(0.03) probably_damaging(0.918) TCGA-FR-A726-01 13 27259944 27259944 G A WASF3 Missense_Mutation p.D491N 0.39 deleterious(0) unknown(0) TCGA-FR-A726-01 13 28624232 28624232 C T FLT3 Missense_Mutation p.D248N 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 13 28626694 28626694 G A FLT3 Missense_Mutation p.S201L 0.28 tolerated(0.06) benign(0.002) TCGA-FR-A726-01 13 28636143 28636143 C T FLT3 Missense_Mutation p.E77K 0.30 tolerated(0.27) benign(0.002) TCGA-FR-A726-01 13 28830465 28830465 C T PAN3 Missense_Mutation p.S346F 0.26 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 13 28877400 28877400 G A FLT1 Silent p.F1307F 0.32 TCGA-FR-A726-01 13 28964036 28964036 G A FLT1 Silent p.T622T 0.36 TCGA-FR-A726-01 13 29001962 29001962 C T FLT1 Silent p.G401G 0.28 TCGA-FR-A726-01 13 29001985 29001985 C T FLT1 Missense_Mutation p.D394N 0.27 deleterious(0.01) possibly_damaging(0.822) TCGA-FR-A726-01 13 29599163 29599163 G A MTUS2 Missense_Mutation p.E120K 0.39 tolerated(0.59) benign(0.439) TCGA-FR-A726-01 13 29599315 29599315 G A MTUS2 Silent p.K170K 0.28 TCGA-FR-A726-01 13 29599316 29599316 G A MTUS2 Missense_Mutation p.D171N 0.28 tolerated(0.06) probably_damaging(0.935) TCGA-FR-A726-01 13 29600554 29600554 C T MTUS2 Silent p.P583P 0.30 TCGA-FR-A726-01 13 29600690 29600690 C T MTUS2 Nonsense_Mutation p.Q629* 0.20 TCGA-FR-A726-01 13 31205192 31205192 C T USPL1 Missense_Mutation p.S150L 0.27 deleterious(0.03) benign(0.051) TCGA-FR-A726-01 13 32376410 32376410 G A RXFP2 Silent p.R711R 0.09 TCGA-FR-A726-01 13 32376601 32376601 G A RXFP2 3'UTR 0.30 TCGA-FR-A726-01 13 32526962 32526962 C T EEF1DP3 RNA 0.40 TCGA-FR-A726-01 13 32722081 32722081 C T FRY Silent p.A463A 0.31 TCGA-FR-A726-01 13 32798472 32798472 C T FRY Silent p.P1622P 0.08 TCGA-FR-A726-01 13 32811773 32811773 C T FRY Missense_Mutation p.S2023F 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A726-01 13 32818276 32818276 A C FRY Missense_Mutation p.Q2262P 0.24 tolerated(0.42) benign(0.029) TCGA-FR-A726-01 13 33629411 33629411 C T KL Missense_Mutation p.P520S 0.33 tolerated(0.07) possibly_damaging(0.764) TCGA-FR-A726-01 13 33704351 33704351 G A STARD13 Missense_Mutation p.R155C 0.22 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 13 35770426 35770426 C T NBEA Missense_Mutation p.H1785Y 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.589) TCGA-FR-A726-01 13 36141139 36141139 C T NBEA Silent p.F2340F 0.09 TCGA-FR-A726-01 13 36223953 36223953 C T NBEA Silent p.L2623L 0.34 TCGA-FR-A726-01 13 36424902 36424902 G A DCLK1 Intron 0.24 TCGA-FR-A726-01 13 36744886 36744886 G A SOHLH2 Missense_Mutation p.P424S 0.34 tolerated_low_confidence(0.09) benign(0.006) TCGA-FR-A726-01 13 36748950 36748950 C T SOHLH2 Missense_Mutation p.G310E 0.23 deleterious(0.02) possibly_damaging(0.753) TCGA-FR-A726-01 13 37011810 37011810 C T CCNA1 Silent p.F114F 0.35 TCGA-FR-A726-01 13 37591446 37591446 G A SUPT20H Missense_Mutation p.S643F 0.39 tolerated(0.7) possibly_damaging(0.521) TCGA-FR-A726-01 13 37596251 37596251 G A SUPT20H Intron 0.40 TCGA-FR-A726-01 13 38154822 38154822 C T POSTN Missense_Mutation p.E469K 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 13 38171377 38171377 C T POSTN Silent p.K54K 0.30 TCGA-FR-A726-01 13 38229380 38229380 C T TRPC4 Missense_Mutation p.G577R 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 13 39263363 39263363 C T FREM2 Missense_Mutation p.L628F 0.25 tolerated(0.68) benign(0.001) TCGA-FR-A726-01 13 39264519 39264519 C T FREM2 Missense_Mutation p.S1013F 0.29 tolerated(0.51) benign(0.402) TCGA-FR-A726-01 13 39452366 39452366 G A FREM2 Missense_Mutation p.A2923T 0.37 tolerated(0.31) benign(0.001) TCGA-FR-A726-01 13 39588309 39588309 G A PROSER1 Silent p.S360S 0.33 TCGA-FR-A726-01 13 39588310 39588310 G A PROSER1 Missense_Mutation p.S360F 0.33 deleterious(0) possibly_damaging(0.632) TCGA-FR-A726-01 13 40273713 40273713 C G COG6 Missense_Mutation p.F414L 0.08 deleterious(0.05) probably_damaging(0.936) TCGA-FR-A726-01 13 41133797 41133797 C T FOXO1 Missense_Mutation p.D611N 0.39 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 13 42393372 42393372 G A VWA8 Silent p.I617I 0.28 TCGA-FR-A726-01 13 42465714 42465714 G A VWA8 Missense_Mutation p.R165C 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 42701685 42701685 C T DGKH Silent p.T93T 0.33 TCGA-FR-A726-01 13 42703691 42703691 C T DGKH Silent p.L103L 0.26 TCGA-FR-A726-01 13 42866541 42866541 C T AKAP11 Silent p.F24F 0.33 TCGA-FR-A726-01 13 42873898 42873898 C T AKAP11 Missense_Mutation p.P339L 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 42874323 42874323 C T AKAP11 Missense_Mutation p.H481Y 0.32 tolerated(0.21) benign(0.381) TCGA-FR-A726-01 13 42875672 42875672 A C AKAP11 Missense_Mutation p.E930D 0.34 tolerated(0.53) benign(0.073) TCGA-FR-A726-01 13 43181083 43181083 C T TNFSF11 3'UTR 0.21 TCGA-FR-A726-01 13 46287593 46287593 C T SPERT Missense_Mutation p.P145S 0.34 tolerated(0.06) probably_damaging(0.97) TCGA-FR-A726-01 13 46584555 46584555 G A ZC3H13 Missense_Mutation p.P225L 0.33 unknown(0) TCGA-FR-A726-01 13 46619144 46619144 C T ZC3H13 Missense_Mutation p.R58K 0.33 unknown(0) TCGA-FR-A726-01 13 47012055 47012055 G A PPP1R2P4 RNA 0.32 TCGA-FR-A726-01 13 47260076 47260076 C T LRCH1 Missense_Mutation p.S241F 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 47315819 47315819 C T LRCH1 Missense_Mutation p.R710C 0.35 deleterious(0.01) possibly_damaging(0.896) TCGA-FR-A726-01 13 47351729 47351729 G A ESD Silent p.S210S 0.26 TCGA-FR-A726-01 13 47409352 47409352 C T HTR2A Missense_Mutation p.A346T 0.31 tolerated(0.31) benign(0.091) TCGA-FR-A726-01 13 49281649 49281649 G A CYSLTR2 Silent p.E232E 0.38 TCGA-FR-A726-01 13 49762724 49762724 C T FNDC3A Silent p.F633F 0.31 TCGA-FR-A726-01 13 50062758 50062758 T C SETDB2 Missense_Mutation p.F649L 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 13 51584228 51584228 G A GUCY1B2 RNA 0.24 TCGA-FR-A726-01 13 52439880 52439880 G A CCDC70 Nonsense_Mutation p.W122* 0.31 TCGA-FR-A726-01 13 52511700 52511700 G A ATP7B Missense_Mutation p.S1272F 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 52531657 52531657 G A ATP7B Silent p.I814I 0.31 TCGA-FR-A726-01 13 52548122 52548122 C T ATP7B Missense_Mutation p.E412K 0.08 tolerated(0.12) possibly_damaging(0.515) TCGA-FR-A726-01 13 52660461 52660461 G A NEK5 Silent p.Y477Y 0.27 TCGA-FR-A726-01 13 52710373 52710373 C T NEK3 Silent p.R334R 0.42 TCGA-FR-A726-01 13 52952712 52952712 C T THSD1 Missense_Mutation p.E465K 0.35 deleterious(0.03) benign(0.081) TCGA-FR-A726-01 13 53421040 53421040 G A PCDH8 Missense_Mutation p.P511L 0.20 tolerated(0.44) benign(0.029) TCGA-FR-A726-01 13 53421041 53421041 G A PCDH8 Missense_Mutation p.P511S 0.16 tolerated(0.18) benign(0.021) TCGA-FR-A726-01 13 53624304 53624304 G A OLFM4 Missense_Mutation p.D311N 0.33 tolerated(0.23) benign(0.308) TCGA-FR-A726-01 13 53624588 53624588 G A OLFM4 Missense_Mutation p.M405I 0.27 tolerated(1) benign(0.004) TCGA-FR-A726-01 13 58298958 58298958 G A PCDH17 Missense_Mutation p.D1004N 0.30 deleterious(0) possibly_damaging(0.65) TCGA-FR-A726-01 13 58298999 58298999 T C PCDH17 Silent p.P1017P 0.32 TCGA-FR-A726-01 13 58299400 58299400 G A PCDH17 Missense_Mutation p.G1151E 0.34 tolerated_low_confidence(0.39) benign(0.152) TCGA-FR-A726-01 13 61985485 61985485 C T PCDH20 Missense_Mutation p.G916E 0.17 tolerated(0.56) benign(0.003) TCGA-FR-A726-01 13 61985899 61985899 G A PCDH20 Missense_Mutation p.A778V 0.54 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 13 70314662 70314662 A C KLHL1 Missense_Mutation p.Y556D 0.07 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 13 75873520 75873520 G A TBC1D4 Silent p.L1034L 0.49 TCGA-FR-A726-01 13 76381981 76381981 G A LMO7 Missense_Mutation p.R288Q 0.44 deleterious(0) probably_damaging(0.941) TCGA-FR-A726-01 13 76382158 76382158 C T LMO7 Missense_Mutation p.S347L 0.56 deleterious(0) possibly_damaging(0.721) TCGA-FR-A726-01 13 76414540 76414540 C T LMO7 Missense_Mutation p.T931I 0.09 tolerated(0.06) possibly_damaging(0.548) TCGA-FR-A726-01 13 76415879 76415879 G A LMO7 Missense_Mutation p.R1031Q 0.42 deleterious(0.03) benign(0.016) TCGA-FR-A726-01 13 77755871 77755871 G A MYCBP2 Missense_Mutation p.P1598S 0.11 possibly_damaging(0.827) TCGA-FR-A726-01 13 79189974 79189974 G A RNF219 Missense_Mutation p.P641L 0.42 deleterious(0) possibly_damaging(0.744) TCGA-FR-A726-01 13 79943035 79943035 G A RBM26 Missense_Mutation p.S242L 0.36 deleterious(0.01) possibly_damaging(0.572) TCGA-FR-A726-01 13 86368512 86368512 C T SLITRK6 Missense_Mutation p.G711E 0.10 tolerated(0.67) benign(0.002) TCGA-FR-A726-01 13 92345689 92345689 G A GPC5 Missense_Mutation p.E192K 0.43 deleterious(0) possibly_damaging(0.7) TCGA-FR-A726-01 13 95725532 95725532 C T ABCC4 Missense_Mutation p.A982T 0.12 tolerated(0.1) benign(0.012) TCGA-FR-A726-01 13 95840707 95840707 C T ABCC4 Silent p.K451K 0.43 TCGA-FR-A726-01 13 95858788 95858788 G A ABCC4 Nonsense_Mutation p.Q387* 0.47 TCGA-FR-A726-01 13 96086093 96086093 C T CLDN10 Silent p.S2S 0.46 TCGA-FR-A726-01 13 96234475 96234475 C T DZIP1 3'UTR 0.51 TCGA-FR-A726-01 13 96239919 96239919 G A DZIP1 Missense_Mutation p.P698S 0.11 tolerated(0.05) possibly_damaging(0.821) TCGA-FR-A726-01 13 96264355 96264355 C T DZIP1 Missense_Mutation p.R417K 0.58 deleterious(0.04) benign(0.333) TCGA-FR-A726-01 13 97484776 97484776 C T HS6ST3 Missense_Mutation p.P247L 0.53 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 97485466 97485466 C T HS6ST3 3'UTR 0.19 TCGA-FR-A726-01 13 97639159 97639159 G A OXGR1 Silent p.I285I 0.11 TCGA-FR-A726-01 13 97639386 97639386 G A OXGR1 Missense_Mutation p.P210S 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 13 97639387 97639387 G A OXGR1 Silent p.L209L 0.36 TCGA-FR-A726-01 13 97639571 97639571 C T OXGR1 Missense_Mutation p.R148Q 0.13 tolerated(0.13) benign(0.079) TCGA-FR-A726-01 13 99061620 99061620 C T FARP1 Silent p.S481S 0.15 TCGA-FR-A726-01 14 100602259 100602259 C T EVL Silent p.S306S 0.32 TCGA-FR-A726-01 14 100603978 100603978 C T EVL Missense_Mutation p.S343F 0.37 deleterious(0) possibly_damaging(0.739) TCGA-FR-A726-01 14 100795800 100795800 G A SLC25A47 Missense_Mutation p.G249R 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A726-01 14 101004389 101004389 C T BEGAIN Missense_Mutation p.A567T 0.28 tolerated(0.4) benign(0.132) TCGA-FR-A726-01 14 101193318 101193318 C T DLK1 5'UTR 0.33 TCGA-FR-A726-01 14 101200996 101200996 C T DLK1 Silent p.I305I 0.31 TCGA-FR-A726-01 14 101347471 101347471 A G RTL1 Missense_Mutation p.Y1219H 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.726) TCGA-FR-A726-01 14 101347472 101347472 G A RTL1 Silent p.R1218R 0.33 TCGA-FR-A726-01 14 101349291 101349291 G A RTL1 Missense_Mutation p.S612F 0.22 deleterious(0) benign(0.425) TCGA-FR-A726-01 14 101350708 101350708 C T RTL1 Missense_Mutation p.D140N 0.31 tolerated_low_confidence(0.69) benign(0.012) TCGA-FR-A726-01 14 101350957 101350957 C T RTL1 Missense_Mutation p.E57K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.461) TCGA-FR-A726-01 14 101402881 101402881 C T SNORD113-4 RNA 0.29 TCGA-FR-A726-01 14 101442850 101442850 G A SNORD114-19 RNA 0.38 TCGA-FR-A726-01 14 101526987 101526987 C T MIR496 RNA 0.38 TCGA-FR-A726-01 14 102028191 102028191 G A DIO3 Missense_Mutation p.G120S 0.29 tolerated(0.39) probably_damaging(0.999) TCGA-FR-A726-01 14 102028731 102028731 C T DIO3 Missense_Mutation p.R300W 0.28 deleterious_low_confidence(0.01) benign(0.157) TCGA-FR-A726-01 14 102446865 102446865 C T DYNC1H1 Silent p.T313T 0.26 TCGA-FR-A726-01 14 102700110 102700110 G A MOK Missense_Mutation p.P203S 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-FR-A726-01 14 102901490 102901490 C T TECPR2 Missense_Mutation p.S779F 0.35 deleterious(0) possibly_damaging(0.873) TCGA-FR-A726-01 14 103180884 103180884 C T RCOR1 Missense_Mutation p.S328F 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 103430944 103430944 G A CDC42BPB Missense_Mutation p.S874F 0.36 deleterious(0.01) probably_damaging(0.95) TCGA-FR-A726-01 14 103592793 103592793 C T TNFAIP2 5'UTR 0.35 TCGA-FR-A726-01 14 103597986 103597986 G A TNFAIP2 Missense_Mutation p.E437K 0.44 tolerated(0.06) benign(0.088) TCGA-FR-A726-01 14 103600052 103600052 C T TNFAIP2 Missense_Mutation p.P579S 0.37 deleterious(0) probably_damaging(0.934) TCGA-FR-A726-01 14 103987710 103987710 C T CKB Silent p.E181E 0.26 TCGA-FR-A726-01 14 104026905 104026905 G A BAG5 Silent p.V240V 0.39 TCGA-FR-A726-01 14 104205250 104205250 G A PPP1R13B Silent p.F901F 0.26 TCGA-FR-A726-01 14 104515970 104515970 G A TDRD9 Missense_Mutation p.E1334K 0.33 tolerated(0.13) benign(0.008) TCGA-FR-A726-01 14 104642024 104642024 G A KIF26A Missense_Mutation p.E967K 0.53 tolerated(0.1) benign(0.257) TCGA-FR-A726-01 14 104643449 104643449 G A KIF26A Missense_Mutation p.E1442K 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-FR-A726-01 14 105179178 105179178 C T INF2 Missense_Mutation p.A875V 0.09 tolerated(0.07) unknown(0) TCGA-FR-A726-01 14 105344784 105344784 C T CEP170B Silent p.S93S 0.25 TCGA-FR-A726-01 14 105349666 105349666 C T CEP170B Missense_Mutation p.S291F 0.24 deleterious(0) probably_damaging(0.97) TCGA-FR-A726-01 14 105407589 105407589 C T AHNAK2 Silent p.T4733T 0.32 TCGA-FR-A726-01 14 105407677 105407677 A C AHNAK2 Missense_Mutation p.F4704C 0.12 probably_damaging(0.916) TCGA-FR-A726-01 14 105419397 105419397 G A AHNAK2 Silent p.S797S 0.28 TCGA-FR-A726-01 14 105420995 105420995 G A AHNAK2 Nonsense_Mutation p.Q265* 0.37 TCGA-FR-A726-01 14 106204166 106204166 G A IGHG1 Missense_Mutation p.S378F 0.37 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 14 106208522 106208522 G A IGHG1 Silent p.F126F 0.30 TCGA-FR-A726-01 14 106321716 106321716 G A IGHM Missense_Mutation p.P173L 0.43 deleterious(0.01) possibly_damaging(0.752) TCGA-FR-A726-01 14 106471456 106471456 G A IGHV1-3 Silent p.T47T 0.06 TCGA-FR-A726-01 14 106471490 106471490 G A IGHV1-3 Missense_Mutation p.S36L 0.34 deleterious(0.03) benign(0.308) TCGA-FR-A726-01 14 106552412 106552412 C T IGHV3-9 Missense_Mutation p.S76N 0.66 tolerated_low_confidence(0.22) benign(0.02) TCGA-FR-A726-01 14 106622318 106622318 G A IGHV3-16 Missense_Mutation p.L10F 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.632) TCGA-FR-A726-01 14 106641795 106641795 G A IGHV1-18 Missense_Mutation p.S40F 0.32 deleterious(0.02) possibly_damaging(0.5) TCGA-FR-A726-01 14 106641813 106641813 C T IGHV1-18 Missense_Mutation p.G34E 0.32 deleterious(0) possibly_damaging(0.737) TCGA-FR-A726-01 14 106733418 106733418 G A IGHV1-24 Missense_Mutation p.S26F 0.39 deleterious(0) possibly_damaging(0.728) TCGA-FR-A726-01 14 106757771 106757771 G A IGHV2-26 Missense_Mutation p.S79F 0.28 tolerated(0.55) benign(0.004) TCGA-FR-A726-01 14 106805264 106805264 G A IGHV4-31 Missense_Mutation p.S100F 0.16 tolerated_low_confidence(0.2) benign(0.048) TCGA-FR-A726-01 14 106815856 106815856 C T IGHV3-33 Missense_Mutation p.D73N 0.70 tolerated_low_confidence(0.27) benign(0.028) TCGA-FR-A726-01 14 106926397 106926397 C T IGHV3-43 Missense_Mutation p.D49N 0.17 deleterious_low_confidence(0.04) benign(0.003) TCGA-FR-A726-01 14 107048882 107048882 G A IGHV3-53 Silent p.F46F 0.23 TCGA-FR-A726-01 14 107078546 107078546 G A IGHV1-58 Missense_Mutation p.R60C 0.31 possibly_damaging(0.589) TCGA-FR-A726-01 14 107083676 107083676 G A IGHV4-59 Silent p.L4L 0.14 TCGA-FR-A726-01 14 107113910 107113910 C T IGHV3-64 Missense_Mutation p.G62E 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.528) TCGA-FR-A726-01 14 107114168 107114168 G A IGHV3-64 Silent p.F10F 0.24 TCGA-FR-A726-01 14 107131243 107131243 G A IGHV3-66 Silent p.F46F 0.17 TCGA-FR-A726-01 14 107170347 107170347 G A IGHV1-69 Silent p.F7F 0.31 TCGA-FR-A726-01 14 107178905 107178905 G A IGHV2-70 Missense_Mutation p.S91F 0.38 deleterious(0) possibly_damaging(0.858) TCGA-FR-A726-01 14 19378093 19378093 G A OR11H12 Missense_Mutation p.G167E 0.08 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 14 19553624 19553624 C T POTEG Missense_Mutation p.P70S 0.24 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-FR-A726-01 14 19553667 19553667 G A POTEG Missense_Mutation p.G84E 0.32 tolerated_low_confidence(0.09) benign(0.073) TCGA-FR-A726-01 14 19553873 19553873 C T POTEG Missense_Mutation p.P153S 0.14 tolerated(0.08) benign(0.102) TCGA-FR-A726-01 14 19988292 19988292 G A POTEM 3'UTR 0.21 TCGA-FR-A726-01 14 20215708 20215708 G A OR4Q3 Missense_Mutation p.G41E 0.33 deleterious(0) possibly_damaging(0.66) TCGA-FR-A726-01 14 20216515 20216515 C T OR4Q3 Missense_Mutation p.P310L 0.37 tolerated_low_confidence(1) benign(0) TCGA-FR-A726-01 14 20248664 20248664 C T OR4M1 Silent p.F61F 0.31 TCGA-FR-A726-01 14 20344543 20344543 G A OR4K2 Missense_Mutation p.M39I 0.28 tolerated(0.27) benign(0.002) TCGA-FR-A726-01 14 20345266 20345266 C T OR4K2 Silent p.P280P 0.31 TCGA-FR-A726-01 14 20388793 20388793 T G OR4K5 Missense_Mutation p.S10A 0.31 tolerated(0.06) benign(0.002) TCGA-FR-A726-01 14 20389429 20389429 C T OR4K5 Missense_Mutation p.L222F 0.25 deleterious(0.01) benign(0.35) TCGA-FR-A726-01 14 20482473 20482473 C T OR4K14 Missense_Mutation p.E294K 0.20 tolerated(0.08) benign(0.244) TCGA-FR-A726-01 14 20502813 20502813 G A OR4K13 Silent p.F35F 0.45 TCGA-FR-A726-01 14 20528638 20528638 G A OR4L1 Silent p.A145A 0.32 TCGA-FR-A726-01 14 20528660 20528660 T A OR4L1 Missense_Mutation p.F153I 0.34 tolerated(0.31) possibly_damaging(0.858) TCGA-FR-A726-01 14 20666507 20666507 C T OR11G2 Missense_Mutation p.A338V 0.34 deleterious(0) benign(0.303) TCGA-FR-A726-01 14 20917416 20917416 A G OSGEP Missense_Mutation p.Y141H 0.34 tolerated(0.05) probably_damaging(0.995) TCGA-FR-A726-01 14 20929460 20929460 G A TMEM55B Missense_Mutation p.P9S 0.39 tolerated(0.14) probably_damaging(0.998) TCGA-FR-A726-01 14 21058358 21058358 C T RNASE12 3'UTR 0.25 TCGA-FR-A726-01 14 21109054 21109054 G A OR6S1 Missense_Mutation p.S266L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 14 21109126 21109126 G A OR6S1 Missense_Mutation p.S242F 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 21167981 21167981 C T RNASE4 3'UTR 0.24 TCGA-FR-A726-01 14 21270136 21270136 G A RNASE1 Missense_Mutation p.S31F 0.45 tolerated(0.09) probably_damaging(0.97) TCGA-FR-A726-01 14 21464975 21464975 T G METTL17 Missense_Mutation p.L457R 0.23 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 14 21542779 21542779 C T ARHGEF40 Missense_Mutation p.P297L 0.35 tolerated_low_confidence(0.15) benign(0.001) TCGA-FR-A726-01 14 21543074 21543074 G A ARHGEF40 Silent p.G395G 0.31 TCGA-FR-A726-01 14 21623859 21623859 G A OR5AU1 Missense_Mutation p.P109L 0.33 deleterious(0) possibly_damaging(0.87) TCGA-FR-A726-01 14 21623911 21623911 C T OR5AU1 Missense_Mutation p.G92R 0.32 deleterious(0) probably_damaging(0.912) TCGA-FR-A726-01 14 21762882 21762882 G A RPGRIP1 Silent p.E44E 0.25 TCGA-FR-A726-01 14 21796744 21796744 G A RPGRIP1 Missense_Mutation p.M1019I 0.33 tolerated(0.14) benign(0.011) TCGA-FR-A726-01 14 21830355 21830355 C A SUPT16H Splice_Site p.X598_splice 0.21 TCGA-FR-A726-01 14 21861657 21861657 C T CHD8 Silent p.E2099E 0.50 TCGA-FR-A726-01 14 21862188 21862188 T A CHD8 Missense_Mutation p.K1922N 0.27 tolerated(0.46) benign(0.077) TCGA-FR-A726-01 14 21869173 21869173 G A CHD8 Silent p.L1411L 0.35 TCGA-FR-A726-01 14 21871192 21871192 G A CHD8 Missense_Mutation p.P1233L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 21871193 21871193 G A CHD8 Missense_Mutation p.P1233S 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 21928428 21928428 G A RAB2B 3'UTR 0.36 TCGA-FR-A726-01 14 22192074 22192074 C T TRAV3 5'UTR 0.40 TCGA-FR-A726-01 14 22237099 22237099 C T TRAV6 Missense_Mutation p.T59I 0.30 tolerated(0.81) possibly_damaging(0.614) TCGA-FR-A726-01 14 22280038 22280038 G A TRAV9-1 Missense_Mutation p.G76E 0.33 tolerated(0.41) benign(0.016) TCGA-FR-A726-01 14 22280085 22280085 T C TRAV9-1 Missense_Mutation p.F92L 0.19 deleterious(0) probably_damaging(0.976) TCGA-FR-A726-01 14 22309689 22309689 G A TRAV12-1 Missense_Mutation p.E24K 0.43 tolerated(0.38) benign(0.016) TCGA-FR-A726-01 14 22337432 22337432 G A TRAV13-1 Missense_Mutation p.E75K 0.29 tolerated(1) benign(0.002) TCGA-FR-A726-01 14 22356047 22356047 C T TRAV12-2 5'UTR 0.32 TCGA-FR-A726-01 14 22476271 22476271 C T TRAV19 Silent p.F67F 0.38 TCGA-FR-A726-01 14 22539370 22539370 G A TRAV22 Missense_Mutation p.G77E 0.29 tolerated(0.05) possibly_damaging(0.799) TCGA-FR-A726-01 14 22675471 22675471 C T TRAV34 Silent p.F14F 0.25 TCGA-FR-A726-01 14 22891824 22891824 G A TRDV2 Missense_Mutation p.G46R 0.32 deleterious(0) probably_damaging(0.946) TCGA-FR-A726-01 14 22925710 22925710 G A TRDJ2 Missense_Mutation p.G11R 0.30 unknown(0) TCGA-FR-A726-01 14 22934727 22934727 G A TRDC 3'UTR 0.27 TCGA-FR-A726-01 14 22985274 22985274 C T TRAJ27 Missense_Mutation p.T9I 0.34 unknown(0) TCGA-FR-A726-01 14 22991034 22991034 G A TRAJ22 Missense_Mutation p.R7K 0.31 unknown(0) TCGA-FR-A726-01 14 23346437 23346437 C T LRP10 Missense_Mutation p.P615S 0.36 deleterious(0.01) benign(0.019) TCGA-FR-A726-01 14 23346620 23346620 C T LRP10 Missense_Mutation p.P676S 0.36 tolerated(0.09) benign(0.073) TCGA-FR-A726-01 14 23458974 23458974 T A C14orf93 Missense_Mutation p.N354I 0.29 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FR-A726-01 14 23511855 23511855 G A PSMB11 Missense_Mutation p.G141R 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 23745083 23745083 G A HOMEZ Missense_Mutation p.P452S 0.34 tolerated(0.25) probably_damaging(0.998) TCGA-FR-A726-01 14 23828102 23828102 C T EFS Missense_Mutation p.G412R 0.35 tolerated(0.46) benign(0.008) TCGA-FR-A726-01 14 23828717 23828717 G A EFS Missense_Mutation p.P324S 0.25 tolerated(0.29) probably_damaging(0.999) TCGA-FR-A726-01 14 23829069 23829069 C T EFS Nonsense_Mutation p.W206* 0.35 TCGA-FR-A726-01 14 23848507 23848507 G A CMTM5 Splice_Site p.X125_splice 0.39 TCGA-FR-A726-01 14 23857874 23857874 C T MYH6 Intron 0.26 TCGA-FR-A726-01 14 23858613 23858613 C T MYH6 Missense_Mutation p.E1323K 0.24 deleterious(0.02) possibly_damaging(0.734) TCGA-FR-A726-01 14 23859537 23859537 T A MYH6 Missense_Mutation p.E1154V 0.26 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 14 23862667 23862667 C T MYH6 Missense_Mutation p.E997K 0.30 deleterious(0) possibly_damaging(0.566) TCGA-FR-A726-01 14 23862668 23862668 C T MYH6 Silent p.K996K 0.30 TCGA-FR-A726-01 14 23869929 23869929 C T MYH6 Missense_Mutation p.E467K 0.33 deleterious(0) possibly_damaging(0.495) TCGA-FR-A726-01 14 23884683 23884683 C T MYH7 Missense_Mutation p.M1730I 0.32 deleterious(0.05) benign(0.012) TCGA-FR-A726-01 14 23894089 23894089 G A MYH7 Silent p.F856F 0.37 TCGA-FR-A726-01 14 23895003 23895003 G A MYH7 Silent p.A729A 0.29 TCGA-FR-A726-01 14 23896073 23896073 C T MYH7 Missense_Mutation p.E653K 0.35 deleterious(0.02) probably_damaging(0.981) TCGA-FR-A726-01 14 23898455 23898455 C T MYH7 Missense_Mutation p.G414R 0.26 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 14 23898456 23898456 C T MYH7 Silent p.K413K 0.26 TCGA-FR-A726-01 14 23902319 23902319 C T MYH7 Missense_Mutation p.D107N 0.28 deleterious(0.01) benign(0.265) TCGA-FR-A726-01 14 24026239 24026239 A G THTPA Silent p.Q91Q 0.34 TCGA-FR-A726-01 14 24035146 24035146 G A AP1G2 Intron 0.26 TCGA-FR-A726-01 14 24542870 24542870 G A CPNE6 Missense_Mutation p.E111K 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A726-01 14 24543519 24543519 C T CPNE6 Missense_Mutation p.S148L 0.30 tolerated(0.09) benign(0.206) TCGA-FR-A726-01 14 24586486 24586486 C T DCAF11 Missense_Mutation p.P99S 0.32 tolerated(0.08) possibly_damaging(0.685) TCGA-FR-A726-01 14 24601864 24601864 C T FITM1 Silent p.L237L 0.34 TCGA-FR-A726-01 14 24619625 24619625 C T RNF31 Nonsense_Mutation p.R389* 0.26 TCGA-FR-A726-01 14 24709037 24709037 G A TINF2 Missense_Mutation p.S441F 0.28 tolerated_low_confidence(0.12) benign(0) TCGA-FR-A726-01 14 24727799 24727799 C T TGM1 Missense_Mutation p.D414N 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 14 24795039 24795039 C T ADCY4 Silent p.K570K 0.29 TCGA-FR-A726-01 14 24845840 24845840 C T NFATC4 Silent p.F862F 0.38 TCGA-FR-A726-01 14 24901147 24901147 C T KHNYN Missense_Mutation p.P227L 0.31 tolerated(0.79) benign(0.001) TCGA-FR-A726-01 14 25101628 25101628 C T GZMB Missense_Mutation p.E81K 0.13 tolerated(1) benign(0.002) TCGA-FR-A726-01 14 26917327 26917327 C T NOVA1 Silent p.R454R 0.34 TCGA-FR-A726-01 14 26917359 26917359 A T NOVA1 Missense_Mutation p.L444I 0.44 tolerated(0.22) probably_damaging(0.919) TCGA-FR-A726-01 14 26917959 26917959 C T NOVA1 Missense_Mutation p.D244N 0.33 deleterious(0) unknown(0) TCGA-FR-A726-01 14 26918101 26918101 A G NOVA1 Silent p.A196A 0.38 TCGA-FR-A726-01 14 26949293 26949293 G A NOVA1 Missense_Mutation p.H113Y 0.28 tolerated(0.49) unknown(0) TCGA-FR-A726-01 14 28734143 28734143 C T BNIP3P1 RNA 0.33 TCGA-FR-A726-01 14 28734155 28734155 C T BNIP3P1 RNA 0.37 TCGA-FR-A726-01 14 31085748 31085748 C T G2E3 3'UTR 0.09 TCGA-FR-A726-01 14 33684611 33684611 C T NPAS3 Missense_Mutation p.P122S 0.24 tolerated(0.07) possibly_damaging(0.641) TCGA-FR-A726-01 14 35252326 35252326 C A BAZ1A Missense_Mutation p.G704W 0.37 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 14 36244917 36244917 G A RALGAPA1 Silent p.F47F 0.27 TCGA-FR-A726-01 14 36960481 36960481 C T SFTA3 Missense_Mutation p.D20N 0.50 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-FR-A726-01 14 36988466 36988466 C T NKX2-1 Missense_Mutation p.G63S 0.26 tolerated(0.46) benign(0.236) TCGA-FR-A726-01 14 37149872 37149872 C T SLC25A21 Silent p.E297E 0.31 TCGA-FR-A726-01 14 37969297 37969297 C T MIPOL1 Nonsense_Mutation p.Q406* 0.27 TCGA-FR-A726-01 14 38278040 38278040 G A TTC6 Missense_Mutation p.E1520K 0.27 deleterious(0.02) possibly_damaging(0.747) TCGA-FR-A726-01 14 38311586 38311586 C T TTC6 3'UTR 0.24 TCGA-FR-A726-01 14 38678620 38678620 C T SSTR1 Missense_Mutation p.S9F 0.15 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 14 38678712 38678712 G A SSTR1 Missense_Mutation p.E40K 0.32 tolerated(0.63) benign(0.002) TCGA-FR-A726-01 14 38724859 38724859 G A CLEC14A Silent p.L123L 0.32 TCGA-FR-A726-01 14 39524352 39524352 G A SEC23A Nonsense_Mutation p.R552* 0.38 TCGA-FR-A726-01 14 39565260 39565260 C T SEC23A Nonsense_Mutation p.W21* 0.09 TCGA-FR-A726-01 14 39703259 39703259 C T MIA2 5'UTR 0.23 TCGA-FR-A726-01 14 39716366 39716366 G A MIA2 Nonsense_Mutation p.W196* 0.27 TCGA-FR-A726-01 14 42356261 42356261 G A LRFN5 Missense_Mutation p.D145N 0.34 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 14 47566294 47566294 G A MDGA2 Missense_Mutation p.P320S 0.32 tolerated(0.36) possibly_damaging(0.6) TCGA-FR-A726-01 14 50666539 50666539 G A SOS2 Missense_Mutation p.S127F 0.36 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 14 50845057 50845057 G A CDKL1 Intron 0.20 TCGA-FR-A726-01 14 51054745 51054745 A G ATL1 Silent p.R77R 0.11 TCGA-FR-A726-01 14 51060597 51060597 G A ATL1 Missense_Mutation p.D186N 0.34 tolerated(0.06) possibly_damaging(0.66) TCGA-FR-A726-01 14 51446075 51446075 G A TRIM9 Intron 0.37 TCGA-FR-A726-01 14 51467434 51467434 C T TRIM9 Silent p.L477L 0.27 TCGA-FR-A726-01 14 52156427 52156427 C T FRMD6 5'UTR 0.33 TCGA-FR-A726-01 14 52481779 52481779 G A NID2 Silent p.T1081T 0.18 TCGA-FR-A726-01 14 52481780 52481780 G A NID2 Missense_Mutation p.T1081I 0.18 tolerated(0.11) benign(0.078) TCGA-FR-A726-01 14 52485914 52485914 C T NID2 Missense_Mutation p.E965K 0.33 tolerated(0.14) possibly_damaging(0.61) TCGA-FR-A726-01 14 52794130 52794130 C T PTGER2 Silent p.S345S 0.25 TCGA-FR-A726-01 14 53020228 53020228 C T GPR137C Silent p.F121F 0.29 TCGA-FR-A726-01 14 53119019 53119019 G A ERO1L Missense_Mutation p.P355S 0.27 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 14 53197111 53197111 C T STYX 5'UTR 0.47 TCGA-FR-A726-01 14 53417190 53417190 G A FERMT2 Silent p.L33L 0.37 TCGA-FR-A726-01 14 55310786 55310786 G A GCH1 Silent p.F234F 0.32 TCGA-FR-A726-01 14 55312531 55312531 G A GCH1 Missense_Mutation p.T194M 0.22 tolerated(0.23) possibly_damaging(0.543) TCGA-FR-A726-01 14 57085349 57085349 C T TMEM260 Missense_Mutation p.A365V 0.27 tolerated(0.4) benign(0.023) TCGA-FR-A726-01 14 58038651 58038651 T C SLC35F4 Silent p.A334A 0.27 TCGA-FR-A726-01 14 58048150 58048150 C T SLC35F4 Missense_Mutation p.E233K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 14 58895036 58895036 G A KIAA0586 Silent p.V30V 0.23 TCGA-FR-A726-01 14 58934579 58934579 C T KIAA0586 Missense_Mutation p.P847L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 58949253 58949253 C T KIAA0586 Silent p.A1042A 0.26 TCGA-FR-A726-01 14 58954797 58954797 C T KIAA0586 Missense_Mutation p.S1219L 0.25 tolerated(0.11) benign(0.407) TCGA-FR-A726-01 14 59113574 59113574 G A DACT1 Missense_Mutation p.E745K 0.30 deleterious(0) possibly_damaging(0.746) TCGA-FR-A726-01 14 59793358 59793358 C T DAAM1 Silent p.V435V 0.26 TCGA-FR-A726-01 14 60193899 60193899 C T RTN1 Silent p.E501E 0.56 TCGA-FR-A726-01 14 60750126 60750126 C T PPM1A Silent p.I308I 0.36 TCGA-FR-A726-01 14 60758132 60758132 C T PPM1A Missense_Mutation p.A433V 0.25 tolerated(0.1) benign(0.13) TCGA-FR-A726-01 14 60758133 60758133 C T PPM1A Silent p.A433A 0.25 TCGA-FR-A726-01 14 60976662 60976662 G A SIX6 Silent p.R182R 0.26 TCGA-FR-A726-01 14 61180412 61180412 C T SIX4 Missense_Mutation p.E687K 0.39 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-FR-A726-01 14 62547909 62547909 G A SYT16 Missense_Mutation p.E451K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 14 63174776 63174776 C T KCNH5 Missense_Mutation p.G806E 0.39 tolerated_low_confidence(0.2) benign(0.001) TCGA-FR-A726-01 14 63447835 63447835 G A KCNH5 Missense_Mutation p.P233S 0.08 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 14 63749865 63749865 C T RHOJ Silent p.T143T 0.27 TCGA-FR-A726-01 14 64586252 64586252 C T SYNE2 Silent p.S4316S 0.44 TCGA-FR-A726-01 14 64637090 64637090 C T SYNE2 Silent p.F5715F 0.35 TCGA-FR-A726-01 14 65246580 65246580 C T SPTB Missense_Mutation p.G1446R 0.32 tolerated(0.51) benign(0.012) TCGA-FR-A726-01 14 65253517 65253517 A G SPTB Silent p.L1056L 0.39 TCGA-FR-A726-01 14 65260554 65260554 C T SPTB Silent p.Q609Q 0.29 TCGA-FR-A726-01 14 65262127 65262127 G A SPTB Silent p.L524L 0.23 TCGA-FR-A726-01 14 65409291 65409291 C T GPX2 Missense_Mutation p.E52K 0.36 deleterious(0.05) benign(0.262) TCGA-FR-A726-01 14 66082709 66082709 C T FUT8 Missense_Mutation p.P73S 0.09 tolerated(0.79) benign(0.004) TCGA-FR-A726-01 14 67675102 67675102 G A FAM71D Missense_Mutation p.D366N 0.27 tolerated_low_confidence(0.15) benign(0.001) TCGA-FR-A726-01 14 68029127 68029127 G A PLEKHH1 Missense_Mutation p.G260E 0.30 tolerated_low_confidence(0.51) benign(0.001) TCGA-FR-A726-01 14 68045978 68045978 C T PLEKHH1 Missense_Mutation p.H993Y 0.47 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 14 68251983 68251983 G A ZFYVE26 Missense_Mutation p.P1106S 0.36 tolerated(1) benign(0.001) TCGA-FR-A726-01 14 69695608 69695608 C T EXD2 Missense_Mutation p.R137C 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 14 69701480 69701480 C T EXD2 Missense_Mutation p.P261S 0.39 tolerated(0.22) benign(0.013) TCGA-FR-A726-01 14 69701576 69701576 C T EXD2 Nonsense_Mutation p.R293* 0.31 TCGA-FR-A726-01 14 69704486 69704486 A T EXD2 Missense_Mutation p.D496V 0.27 deleterious(0) possibly_damaging(0.844) TCGA-FR-A726-01 14 70246069 70246069 C T SLC10A1 Missense_Mutation p.M192I 0.43 tolerated(0.12) benign(0.013) TCGA-FR-A726-01 14 70633595 70633595 G A SLC8A3 Silent p.S515S 0.32 TCGA-FR-A726-01 14 70633952 70633952 G A SLC8A3 Silent p.S396S 0.06 TCGA-FR-A726-01 14 70634274 70634274 C T SLC8A3 Missense_Mutation p.G289E 0.23 tolerated(0.06) benign(0.11) TCGA-FR-A726-01 14 70634338 70634338 C T SLC8A3 Missense_Mutation p.D268N 0.21 tolerated(0.41) benign(0.003) TCGA-FR-A726-01 14 70713207 70713207 C T ADAM21P1 RNA 0.31 TCGA-FR-A726-01 14 70713532 70713532 C T ADAM21P1 RNA 0.32 TCGA-FR-A726-01 14 70714066 70714066 G A ADAM21P1 RNA 0.31 TCGA-FR-A726-01 14 70924528 70924528 C T ADAM21 Silent p.F104F 0.09 TCGA-FR-A726-01 14 70989852 70989852 G A ADAM20 Silent p.F591F 0.25 TCGA-FR-A726-01 14 70990274 70990274 G A ADAM20 Missense_Mutation p.P451S 0.30 tolerated(0.16) benign(0.036) TCGA-FR-A726-01 14 70991205 70991205 G A ADAM20 Silent p.F140F 0.33 TCGA-FR-A726-01 14 71197460 71197460 C T MAP3K9 Silent p.E998E 0.32 TCGA-FR-A726-01 14 71199302 71199302 G A MAP3K9 Silent p.A942A 0.31 TCGA-FR-A726-01 14 73137971 73137971 G A DPF3 Missense_Mutation p.S316F 0.40 deleterious_low_confidence(0) benign(0.019) TCGA-FR-A726-01 14 73198541 73198541 C T DPF3 Missense_Mutation p.E135K 0.35 tolerated(0.13) benign(0.08) TCGA-FR-A726-01 14 73730952 73730952 C T PAPLN Silent p.I938I 0.22 TCGA-FR-A726-01 14 73730953 73730953 C T PAPLN Missense_Mutation p.H939Y 0.22 deleterious(0.03) benign(0.395) TCGA-FR-A726-01 14 73739222 73739222 G A PAPLN Silent p.R1202R 0.27 TCGA-FR-A726-01 14 74008253 74008253 G A ACOT1 Missense_Mutation p.E172K 0.68 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 14 74766913 74766913 G A ABCD4 Missense_Mutation p.P33S 0.41 tolerated(0.07) possibly_damaging(0.764) TCGA-FR-A726-01 14 74825614 74825614 G A VRTN 3'UTR 0.29 TCGA-FR-A726-01 14 74874163 74874163 C T SYNDIG1L 3'UTR 0.32 TCGA-FR-A726-01 14 75323564 75323564 G A PROX2 Silent p.L289L 0.11 TCGA-FR-A726-01 14 75562103 75562103 G A NEK9 Silent p.S735S 0.35 TCGA-FR-A726-01 14 76211887 76211887 C T TTLL5 Missense_Mutation p.R484C 0.33 deleterious(0) benign(0.217) TCGA-FR-A726-01 14 76452105 76452105 G A IFT43 5'Flank 0.21 TCGA-FR-A726-01 14 77255441 77255441 G A ANGEL1 3'UTR 0.48 TCGA-FR-A726-01 14 77273189 77273189 A G ANGEL1 Missense_Mutation p.F317S 0.24 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 14 77297562 77297562 C T C14orf166B Silent p.F78F 0.09 TCGA-FR-A726-01 14 77685843 77685843 C T TMEM63C Silent p.L51L 0.32 TCGA-FR-A726-01 14 77703063 77703063 G A TMEM63C Silent p.R213R 0.24 TCGA-FR-A726-01 14 77710772 77710772 C T TMEM63C Silent p.S474S 0.31 TCGA-FR-A726-01 14 77714746 77714746 C T TMEM63C Missense_Mutation p.A553V 0.28 deleterious(0) possibly_damaging(0.639) TCGA-FR-A726-01 14 77732774 77732774 G A NGB 3'UTR 0.36 TCGA-FR-A726-01 14 77861052 77861052 G A NOXRED1 Silent p.T334T 0.42 TCGA-FR-A726-01 14 77931932 77931932 C T AHSA1 Silent p.I204I 0.32 TCGA-FR-A726-01 14 77941908 77941908 C T ISM2 3'UTR 0.32 TCGA-FR-A726-01 14 79181112 79181112 G A NRXN3 Silent p.V185V 0.36 TCGA-FR-A726-01 14 79432647 79432647 C T NRXN3 Missense_Mutation p.S519F 0.34 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 14 80993322 80993322 G A CEP128 Missense_Mutation p.S988F 0.29 deleterious(0.02) benign(0.014) TCGA-FR-A726-01 14 81304614 81304614 C T CEP128 Silent p.Q286Q 0.08 TCGA-FR-A726-01 14 81371271 81371271 G A CEP128 Silent p.L122L 0.41 TCGA-FR-A726-01 14 81610028 81610028 G A TSHR Missense_Mutation p.M542I 0.25 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 14 81646484 81646484 T C GTF2A1 3'UTR 0.24 TCGA-FR-A726-01 14 81737086 81737086 C T STON2 Silent p.V847V 0.28 TCGA-FR-A726-01 14 81743843 81743843 G A STON2 Silent p.F604F 0.29 TCGA-FR-A726-01 14 86087931 86087931 G A FLRT2 Missense_Mutation p.G25R 0.32 deleterious(0.03) benign(0.087) TCGA-FR-A726-01 14 86088580 86088580 C T FLRT2 Missense_Mutation p.S241L 0.35 deleterious(0) possibly_damaging(0.464) TCGA-FR-A726-01 14 86089474 86089474 C T FLRT2 Missense_Mutation p.S539F 0.33 tolerated(0.05) probably_damaging(0.947) TCGA-FR-A726-01 14 88477185 88477185 G A GPR65 5'UTR 0.13 TCGA-FR-A726-01 14 88478104 88478104 T A GPR65 Missense_Mutation p.L305I 0.26 tolerated(0.11) benign(0.111) TCGA-FR-A726-01 14 88729858 88729858 C T KCNK10 Silent p.K30K 0.33 TCGA-FR-A726-01 14 88729874 88729874 G A KCNK10 Missense_Mutation p.P25L 0.34 tolerated_low_confidence(0.1) benign(0) TCGA-FR-A726-01 14 88892585 88892585 G A SPATA7 Missense_Mutation p.E128K 0.22 tolerated(0.06) possibly_damaging(0.758) TCGA-FR-A726-01 14 88904655 88904655 C T SPATA7 Silent p.P563P 0.30 TCGA-FR-A726-01 14 88936057 88936057 G A PTPN21 Silent p.S1007S 0.28 TCGA-FR-A726-01 14 89124701 89124701 G A EML5 Missense_Mutation p.A1236V 0.28 deleterious(0) possibly_damaging(0.69) TCGA-FR-A726-01 14 89131692 89131692 C T EML5 Missense_Mutation p.R1089Q 0.19 deleterious(0.04) benign(0.038) TCGA-FR-A726-01 14 90485751 90485751 C T TDP1 Missense_Mutation p.P545S 0.35 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 14 90754587 90754587 C T NRDE2 Silent p.R1044R 0.31 TCGA-FR-A726-01 14 90764716 90764716 G A NRDE2 Silent p.F518F 0.28 TCGA-FR-A726-01 14 91636449 91636449 C T C14orf159 Silent p.F120F 0.34 TCGA-FR-A726-01 14 91773491 91773491 C T CCDC88C Missense_Mutation p.G1029E 0.25 tolerated(0.5) benign(0.005) TCGA-FR-A726-01 14 91780121 91780121 T A CCDC88C Missense_Mutation p.K680M 0.32 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 14 92055973 92055973 G A CATSPERB Missense_Mutation p.S954F 0.30 tolerated(0.71) benign(0.364) TCGA-FR-A726-01 14 92191496 92191496 G A CATSPERB Silent p.R32R 0.33 TCGA-FR-A726-01 14 93119235 93119235 C T RIN3 Missense_Mutation p.S614L 0.37 deleterious(0) possibly_damaging(0.862) TCGA-FR-A726-01 14 93712332 93712332 G A BTBD7 Missense_Mutation p.P808S 0.38 tolerated_low_confidence(0.44) benign(0.004) TCGA-FR-A726-01 14 93730195 93730195 G A BTBD7 Missense_Mutation p.S436L 0.34 deleterious(0) possibly_damaging(0.793) TCGA-FR-A726-01 14 94048655 94048655 A G UNC79 Missense_Mutation p.N746S 0.39 tolerated_low_confidence(0.15) benign(0.023) TCGA-FR-A726-01 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.25 TCGA-FR-A726-01 14 94089013 94089013 G A UNC79 Missense_Mutation p.E1635K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-FR-A726-01 14 94100900 94100900 G A UNC79 Missense_Mutation p.G1740E 0.38 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-FR-A726-01 14 94155082 94155082 C T UNC79 Silent p.A2189A 0.32 TCGA-FR-A726-01 14 94156630 94156630 G A UNC79 Missense_Mutation p.G2280E 0.27 deleterious(0) possibly_damaging(0.86) TCGA-FR-A726-01 14 94187873 94187873 C T PRIMA1 Missense_Mutation p.E127K 0.25 deleterious(0.01) probably_damaging(0.943) TCGA-FR-A726-01 14 94419836 94419836 C T ASB2 Missense_Mutation p.D166N 0.27 tolerated(0.57) benign(0.228) TCGA-FR-A726-01 14 94563282 94563282 C T IFI27L1 5'UTR 0.33 TCGA-FR-A726-01 14 94718098 94718098 G A PPP4R4 Missense_Mutation p.G577E 0.24 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 14 94722940 94722940 G A PPP4R4 Missense_Mutation p.R670K 0.19 tolerated(1) benign(0.001) TCGA-FR-A726-01 14 94770798 94770798 G A SERPINA6 Missense_Mutation p.T392I 0.33 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 14 94845661 94845661 C T SERPINA1 Intron 0.30 TCGA-FR-A726-01 14 94929272 94929272 C T SERPINA9 3'UTR 0.38 TCGA-FR-A726-01 14 94933589 94933589 C T SERPINA9 Silent p.E271E 0.28 TCGA-FR-A726-01 14 94935855 94935855 G A SERPINA9 Missense_Mutation p.S126F 0.39 deleterious(0.05) possibly_damaging(0.748) TCGA-FR-A726-01 14 95053795 95053795 G A SERPINA5 Silent p.E32E 0.20 TCGA-FR-A726-01 14 95081084 95081084 C T SERPINA3 Silent p.G102G 0.32 TCGA-FR-A726-01 14 95107663 95107663 C T SERPINA13P RNA 0.28 TCGA-FR-A726-01 14 95109995 95109995 C T SERPINA13P RNA 0.33 TCGA-FR-A726-01 14 95566251 95566251 G A DICER1 Missense_Mutation p.R1358C 0.31 tolerated(0.06) probably_damaging(0.971) TCGA-FR-A726-01 14 95662948 95662948 C T CLMN Silent p.K865K 0.24 TCGA-FR-A726-01 14 95669274 95669274 A G CLMN Silent p.G804G 0.36 TCGA-FR-A726-01 14 95679636 95679636 C T CLMN Silent p.E176E 0.35 TCGA-FR-A726-01 14 96131399 96131399 G A TCL6 RNA 0.15 TCGA-FR-A726-01 14 96136873 96136873 C T TCL6 RNA 0.38 TCGA-FR-A726-01 14 96137754 96137754 G A TCL6 RNA 0.50 TCGA-FR-A726-01 14 96730992 96730992 G A BDKRB1 Missense_Mutation p.E325K 0.34 tolerated(0.08) benign(0.059) TCGA-FR-A726-01 14 99183661 99183661 C T C14orf177 3'UTR 0.38 TCGA-FR-A726-01 14 99641307 99641307 G A BCL11B Silent p.A622A 0.45 TCGA-FR-A726-01 14 99641404 99641404 T C BCL11B Missense_Mutation p.E590G 0.19 tolerated(0.13) benign(0.021) TCGA-FR-A726-01 14 99641405 99641405 C G BCL11B Missense_Mutation p.E590Q 0.20 tolerated(0.05) possibly_damaging(0.714) TCGA-FR-A726-01 14 99864962 99864962 G A SETD3 3'UTR 0.31 TCGA-FR-A726-01 15 100331837 100331837 G A AC090825.1 5'Flank 0.32 TCGA-FR-A726-01 15 101529477 101529477 C T LRRK1 Silent p.F212F 0.22 TCGA-FR-A726-01 15 101598272 101598272 G A LRRK1 Silent p.G1535G 0.39 TCGA-FR-A726-01 15 101929689 101929689 G A PCSK6 Silent p.I429I 0.23 TCGA-FR-A726-01 15 102242484 102242484 G A TARSL2 Silent p.F393F 0.32 TCGA-FR-A726-01 15 102249097 102249125 CTGTGCTGGACACTGCTCTAAAAAGAAGA - TARSL2 Splice_Site p.X271_splice 0.23 TCGA-FR-A726-01 15 102312073 102312073 G A RN7SL209P 3'Flank 0.20 TCGA-FR-A726-01 15 102346273 102346273 C T OR4F6 Silent p.A117A 0.30 TCGA-FR-A726-01 15 102358672 102358672 C T OR4F15 Missense_Mutation p.R95W 0.06 tolerated_low_confidence(0.15) benign(0) TCGA-FR-A726-01 15 20193356 20193356 C T IGHV3OR15-7 Silent p.L5L 0.37 TCGA-FR-A726-01 15 20489466 20489466 C T CHEK2P2 RNA 0.09 TCGA-FR-A726-01 15 20588632 20588632 C T HERC2P3 RNA 0.11 TCGA-FR-A726-01 15 20588683 20588683 C T HERC2P3 RNA 0.09 TCGA-FR-A726-01 15 20636380 20636380 G A HERC2P3 RNA 0.62 TCGA-FR-A726-01 15 20644197 20644197 C T HERC2P3 RNA 0.34 TCGA-FR-A726-01 15 20644302 20644302 C T HERC2P3 RNA 0.34 TCGA-FR-A726-01 15 20645755 20645755 G A HERC2P3 RNA 0.29 TCGA-FR-A726-01 15 20657729 20657729 G A HERC2P3 RNA 0.38 TCGA-FR-A726-01 15 20666527 20666527 C T HERC2P3 RNA 0.36 TCGA-FR-A726-01 15 22332667 22332667 C T RP11-69H14.6 RNA 0.21 TCGA-FR-A726-01 15 22382615 22382615 C T OR4N4 Missense_Mutation p.T48I 0.04 tolerated(0.05) possibly_damaging(0.846) TCGA-FR-A726-01 15 22383525 22383525 G A OR4N4 3'Flank 0.50 TCGA-FR-A726-01 15 22954255 22954255 G A CYFIP1 Missense_Mutation p.E469K 0.10 deleterious(0) possibly_damaging(0.861) TCGA-FR-A726-01 15 23012350 23012350 A T NIPA2 Missense_Mutation p.M126K 0.25 deleterious(0.01) possibly_damaging(0.58) TCGA-FR-A726-01 15 23205121 23205121 C T WHAMMP3 RNA 0.10 TCGA-FR-A726-01 15 23261927 23261927 G A GOLGA8I Missense_Mutation p.E347K 0.33 deleterious(0.03) possibly_damaging(0.832) TCGA-FR-A726-01 15 23444754 23444754 G A AC100757.1 5'Flank 0.45 TCGA-FR-A726-01 15 23931504 23931507 GGGG AAGA NDN Missense_Mutation p.P287L 0.15 TCGA-FR-A726-01 15 23931540 23931540 G A NDN Silent p.I275I 0.29 TCGA-FR-A726-01 15 23932346 23932346 C T NDN Missense_Mutation p.D7N 0.31 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FR-A726-01 15 24921094 24921094 C T NPAP1 Missense_Mutation p.P27L 0.35 tolerated_low_confidence(1) possibly_damaging(0.851) TCGA-FR-A726-01 15 24922620 24922620 C T NPAP1 Missense_Mutation p.P536S 0.29 tolerated(0.11) probably_damaging(0.964) TCGA-FR-A726-01 15 24922624 24922624 C T NPAP1 Missense_Mutation p.S537F 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-FR-A726-01 15 24923051 24923051 C T NPAP1 Silent p.S679S 0.26 TCGA-FR-A726-01 15 25227088 25227088 G A SNRPN 3'Flank 0.37 TCGA-FR-A726-01 15 25315651 25315651 C T SNORD116-8 RNA 0.36 TCGA-FR-A726-01 15 25330455 25330455 G A SNORD116-18 5'Flank 0.25 TCGA-FR-A726-01 15 25342843 25342843 G A SNORD116-25 RNA 0.30 TCGA-FR-A726-01 15 25346722 25346722 G A SNORD116-27 RNA 0.34 TCGA-FR-A726-01 15 25427583 25427583 C T SNORD115-6 3'Flank 0.25 TCGA-FR-A726-01 15 25430699 25430699 C T SNORD115-10 5'Flank 0.32 TCGA-FR-A726-01 15 25465652 25465652 G A SNORD115-27 RNA 0.28 TCGA-FR-A726-01 15 25476310 25476310 C T SNORD115-33 3'Flank 0.40 TCGA-FR-A726-01 15 25605579 25605579 G A UBE3A Silent p.S571S 0.34 TCGA-FR-A726-01 15 25958934 25958934 G A ATP10A Missense_Mutation p.S744F 0.24 deleterious(0) probably_damaging(0.947) TCGA-FR-A726-01 15 27114398 27114398 G A GABRA5 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0) TCGA-FR-A726-01 15 27188527 27188527 G A GABRA5 Missense_Mutation p.G348D 0.29 tolerated(0.07) benign(0.403) TCGA-FR-A726-01 15 27193475 27193475 T G GABRA5 3'UTR 0.36 TCGA-FR-A726-01 15 28600104 28600104 C T RP11-483E23.2 Intron 0.16 TCGA-FR-A726-01 15 28632753 28632753 G A GOLGA8F Missense_Mutation p.G441R 0.16 tolerated(0.05) possibly_damaging(0.712) TCGA-FR-A726-01 15 29346544 29346544 G A APBA2 Missense_Mutation p.E153K 0.08 tolerated_low_confidence(0.25) benign(0.017) TCGA-FR-A726-01 15 29346829 29346829 G A APBA2 Missense_Mutation p.A248T 0.35 tolerated_low_confidence(0.24) benign(0.009) TCGA-FR-A726-01 15 30011216 30011216 G A TJP1 Missense_Mutation p.P1044S 0.32 tolerated_low_confidence(0.21) benign(0.001) TCGA-FR-A726-01 15 30664393 30664393 C T CHRFAM7A Silent p.L160L 0.62 TCGA-FR-A726-01 15 31340111 31340111 A C TRPM1 Missense_Mutation p.L552R 0.24 deleterious(0) possibly_damaging(0.904) TCGA-FR-A726-01 15 32323121 32323121 C T CHRNA7 Nonsense_Mutation p.Q55* 0.36 TCGA-FR-A726-01 15 32460206 32460206 G A CHRNA7 Silent p.K381K 0.15 TCGA-FR-A726-01 15 32889663 32889663 G A GOLGA8N Silent p.K107K 0.42 TCGA-FR-A726-01 15 33842379 33842379 C T RYR3 Silent p.I278I 0.38 TCGA-FR-A726-01 15 34110877 34110877 G A RYR3 Silent p.T3566T 0.26 TCGA-FR-A726-01 15 34295274 34295274 G A AVEN Missense_Mutation p.S135L 0.36 tolerated(0.11) probably_damaging(0.91) TCGA-FR-A726-01 15 34646934 34646934 G A NUTM1 Splice_Site p.X426_splice 0.28 TCGA-FR-A726-01 15 35045158 35045158 C T GJD2 Missense_Mutation p.E163K 0.25 tolerated(0.23) benign(0.003) TCGA-FR-A726-01 15 35046686 35046686 C T GJD2 Missense_Mutation p.G2R 0.24 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-FR-A726-01 15 35155081 35155081 G A AQR Missense_Mutation p.P1339L 0.08 deleterious(0.01) benign(0.266) TCGA-FR-A726-01 15 35168150 35168150 G A AQR Missense_Mutation p.P1075S 0.28 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 15 35530181 35530181 G A ANP32AP1 RNA 0.33 TCGA-FR-A726-01 15 37001446 37001446 G T C15orf41 Missense_Mutation p.K189N 0.25 deleterious(0.04) benign(0.089) TCGA-FR-A726-01 15 38228528 38228528 G A TMCO5A Missense_Mutation p.E2K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 38811524 38811524 G A RASGRP1 Silent p.I125I 0.27 TCGA-FR-A726-01 15 39876223 39876223 G A THBS1 Silent p.V246V 0.43 TCGA-FR-A726-01 15 39884972 39884972 C T THBS1 Silent p.L912L 0.18 TCGA-FR-A726-01 15 40030403 40030403 C A FSIP1 Splice_Site p.X261_splice 0.32 TCGA-FR-A726-01 15 40093614 40093614 G A GPR176 Missense_Mutation p.P423S 0.31 tolerated_low_confidence(0.7) benign(0) TCGA-FR-A726-01 15 40568173 40568173 G A PAK6 Missense_Mutation p.D642N 0.31 deleterious(0.01) possibly_damaging(0.676) TCGA-FR-A726-01 15 40568220 40568220 C T PAK6 Silent p.F657F 0.35 TCGA-FR-A726-01 15 40584645 40584645 C T PLCB2 Splice_Site p.X776_splice 0.45 TCGA-FR-A726-01 15 40590483 40590483 G A PLCB2 Missense_Mutation p.P366S 0.10 tolerated(0.07) possibly_damaging(0.899) TCGA-FR-A726-01 15 40590870 40590870 C T PLCB2 Missense_Mutation p.G297E 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 40750686 40750686 C T BAHD1 Missense_Mutation p.S8F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-FR-A726-01 15 40849539 40849539 G A C15orf57 Nonsense_Mutation p.Q102* 0.26 TCGA-FR-A726-01 15 41482303 41482303 G A EXD1 Silent p.I238I 0.28 TCGA-FR-A726-01 15 41805041 41805041 C T LTK Missense_Mutation p.A75T 0.43 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FR-A726-01 15 41860534 41860534 T G TYRO3 Missense_Mutation p.S361A 0.23 tolerated(0.85) benign(0.008) TCGA-FR-A726-01 15 41862843 41862843 G A TYRO3 Missense_Mutation p.E509K 0.08 tolerated(0.55) benign(0.004) TCGA-FR-A726-01 15 42003357 42003357 C T MGA Missense_Mutation p.P965L 0.38 deleterious(0) possibly_damaging(0.721) TCGA-FR-A726-01 15 42058846 42058846 C T MGA Missense_Mutation p.P2856S 0.31 tolerated(0.76) benign(0.008) TCGA-FR-A726-01 15 42113892 42113892 C T MAPKBP1 Silent p.P949P 0.32 TCGA-FR-A726-01 15 42459656 42459656 G A VPS39 Missense_Mutation p.T438I 0.34 deleterious(0.04) benign(0.29) TCGA-FR-A726-01 15 42631946 42631946 C T GANC Silent p.F641F 0.33 TCGA-FR-A726-01 15 42749432 42749432 C T ZNF106 5'UTR 0.27 TCGA-FR-A726-01 15 42840660 42840660 G A LRRC57 5'UTR 0.25 TCGA-FR-A726-01 15 43067873 43067873 G A TTBK2 Silent p.L486L 0.08 TCGA-FR-A726-01 15 43531425 43531425 C T TGM5 Silent p.K347K 0.31 TCGA-FR-A726-01 15 43552718 43552718 C T TGM5 Missense_Mutation p.E24K 0.31 tolerated(0.12) possibly_damaging(0.559) TCGA-FR-A726-01 15 43572144 43572144 G A TGM7 Missense_Mutation p.P453S 0.26 tolerated(0.54) benign(0.004) TCGA-FR-A726-01 15 43574213 43574213 G A TGM7 Missense_Mutation p.P394S 0.09 tolerated(0.18) benign(0.043) TCGA-FR-A726-01 15 43574283 43574283 C T TGM7 Silent p.G370G 0.29 TCGA-FR-A726-01 15 43814203 43814203 C T MAP1A Missense_Mutation p.R178C 0.34 probably_damaging(0.999) TCGA-FR-A726-01 15 43814390 43814390 C T MAP1A Missense_Mutation p.S240F 0.36 probably_damaging(0.994) TCGA-FR-A726-01 15 43819091 43819091 G A MAP1A Missense_Mutation p.G1807E 0.32 possibly_damaging(0.804) TCGA-FR-A726-01 15 43873294 43873294 G A PPIP5K1 Missense_Mutation p.R323C 0.32 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 15 44671902 44671902 C T CASC4 Missense_Mutation p.P273S 0.24 tolerated(0.69) benign(0.011) TCGA-FR-A726-01 15 44671903 44671903 C T CASC4 Missense_Mutation p.P273L 0.24 tolerated(0.93) benign(0.007) TCGA-FR-A726-01 15 44955833 44955833 C T SPG11 Missense_Mutation p.E5K 0.09 tolerated_low_confidence(0.27) unknown(0) TCGA-FR-A726-01 15 45047476 45047476 G A TRIM69 Missense_Mutation p.D129N 0.34 deleterious(0.03) benign(0.191) TCGA-FR-A726-01 15 45390254 45390254 G A DUOX2 Missense_Mutation p.S1173F 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 45411288 45411288 T G DUOXA1 Intron 0.26 TCGA-FR-A726-01 15 45415183 45415183 G A DUOXA1 Silent p.F10F 0.38 TCGA-FR-A726-01 15 45427437 45427437 G A DUOX1 Missense_Mutation p.R148K 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 45457270 45457270 G A DUOX1 3'UTR 0.40 TCGA-FR-A726-01 15 45814219 45814219 C T SLC30A4 Missense_Mutation p.A112T 0.40 tolerated(0.56) benign(0) TCGA-FR-A726-01 15 48053197 48053197 T C SEMA6D Silent p.L82L 0.29 TCGA-FR-A726-01 15 48063951 48063951 C T SEMA6D Missense_Mutation p.S1064F 0.27 deleterious(0.01) possibly_damaging(0.466) TCGA-FR-A726-01 15 48624363 48624363 C T DUT Intron 0.21 TCGA-FR-A726-01 15 49217128 49217128 C T SHC4 Missense_Mutation p.V202M 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 50211099 50211099 C T ATP8B4 Missense_Mutation p.E658K 0.27 deleterious(0.01) possibly_damaging(0.672) TCGA-FR-A726-01 15 50474971 50474971 C T SLC27A2 Missense_Mutation p.A116V 0.36 tolerated(0.5) benign(0.41) TCGA-FR-A726-01 15 50528387 50528387 G A SLC27A2 3'UTR 0.33 TCGA-FR-A726-01 15 50550694 50550694 G A HDC Silent p.P75P 0.21 TCGA-FR-A726-01 15 50555601 50555601 C T HDC Missense_Mutation p.R12K 0.23 tolerated(1) benign(0) TCGA-FR-A726-01 15 51502939 51502939 G A CYP19A1 3'UTR 0.36 TCGA-FR-A726-01 15 51502940 51502940 G C CYP19A1 3'UTR 0.36 TCGA-FR-A726-01 15 51783791 51783791 C T DMXL2 Missense_Mutation p.R1646Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 52497133 52497133 G A MYO5C Silent p.I1583I 0.40 TCGA-FR-A726-01 15 52515741 52515741 C T MYO5C Missense_Mutation p.M1209I 0.30 tolerated(0.33) benign(0.027) TCGA-FR-A726-01 15 52531994 52531994 C T MYO5C Missense_Mutation p.R880Q 0.44 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A726-01 15 52564918 52564918 G A MYO5C Silent p.A203A 0.25 TCGA-FR-A726-01 15 52564919 52564919 G A MYO5C Missense_Mutation p.A203V 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 52844159 52844159 G A ARPP19 Missense_Mutation p.S104F 0.37 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 15 53992098 53992098 G A WDR72 Silent p.S538S 0.34 TCGA-FR-A726-01 15 53997348 53997348 G A WDR72 Silent p.F395F 0.27 TCGA-FR-A726-01 15 54305221 54305221 G A UNC13C Missense_Mutation p.D41N 0.28 tolerated_low_confidence(0.1) benign(0.004) TCGA-FR-A726-01 15 54306001 54306001 G A UNC13C Missense_Mutation p.E301K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-FR-A726-01 15 54306172 54306172 G A UNC13C Missense_Mutation p.E358K 0.39 tolerated_low_confidence(0.09) benign(0.235) TCGA-FR-A726-01 15 54306782 54306782 C T UNC13C Missense_Mutation p.S561L 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A726-01 15 54307601 54307601 G A UNC13C Missense_Mutation p.R834Q 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A726-01 15 54614145 54614145 C T UNC13C Missense_Mutation p.S1426L 0.55 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-FR-A726-01 15 54685270 54685270 G A UNC13C Missense_Mutation p.E1580K 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.771) TCGA-FR-A726-01 15 54707187 54707187 C T UNC13C Nonsense_Mutation p.Q1619* 0.15 TCGA-FR-A726-01 15 54847638 54847638 G A UNC13C Missense_Mutation p.M1962I 0.24 deleterious_low_confidence(0.04) benign(0.005) TCGA-FR-A726-01 15 55652890 55652890 C T CCPG1 Missense_Mutation p.E361K 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 55731680 55731680 C T DYX1C1 Missense_Mutation p.D295N 0.26 deleterious(0) probably_damaging(0.948) TCGA-FR-A726-01 15 55971511 55971511 G A PRTG Missense_Mutation p.S369L 0.28 tolerated(0.15) benign(0.107) TCGA-FR-A726-01 15 55971519 55971519 C T PRTG Silent p.K366K 0.37 TCGA-FR-A726-01 15 57734622 57734622 G A CGNL1 Silent p.E583E 0.30 TCGA-FR-A726-01 15 57753914 57753914 C T CGNL1 Silent p.L743L 0.27 TCGA-FR-A726-01 15 57810591 57810591 G A CGNL1 Missense_Mutation p.G871R 0.29 tolerated(0.73) benign(0.001) TCGA-FR-A726-01 15 57810592 57810592 G A CGNL1 Missense_Mutation p.G871E 0.29 tolerated(0.9) benign(0.001) TCGA-FR-A726-01 15 58253397 58253397 G A ALDH1A2 Silent p.V449V 0.25 TCGA-FR-A726-01 15 58287303 58287303 G A ALDH1A2 Silent p.P176P 0.28 TCGA-FR-A726-01 15 58357895 58357895 C T ALDH1A2 5'UTR 0.29 TCGA-FR-A726-01 15 58830561 58830561 G A LIPC Missense_Mutation p.E40K 0.25 tolerated(0.23) benign(0.023) TCGA-FR-A726-01 15 58838106 58838106 G A LIPC Missense_Mutation p.G247E 0.31 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 15 58855831 58855831 G A LIPC Missense_Mutation p.V433I 0.33 tolerated(0.06) benign(0.443) TCGA-FR-A726-01 15 59347928 59347928 C T RNF111 Missense_Mutation p.S352F 0.28 deleterious(0) possibly_damaging(0.82) TCGA-FR-A726-01 15 59430425 59430425 G A MYO1E Silent p.A1074A 0.30 TCGA-FR-A726-01 15 59430537 59430537 G A MYO1E Missense_Mutation p.P1037L 0.28 tolerated(0.4) benign(0.001) TCGA-FR-A726-01 15 59499214 59499214 G A LDHAL6B Silent p.G25G 0.24 TCGA-FR-A726-01 15 59499935 59499935 G A LDHAL6B Missense_Mutation p.D266N 0.27 tolerated(0.24) benign(0.01) TCGA-FR-A726-01 15 59752248 59752248 C T FAM81A Missense_Mutation p.A46V 0.23 tolerated(1) probably_damaging(0.982) TCGA-FR-A726-01 15 59911037 59911037 G T GCNT3 Missense_Mutation p.W200C 0.36 deleterious(0.02) possibly_damaging(0.902) TCGA-FR-A726-01 15 59911039 59911039 C T GCNT3 Missense_Mutation p.S201F 0.36 deleterious(0.02) benign(0.114) TCGA-FR-A726-01 15 63044532 63044532 C T TLN2 Missense_Mutation p.S1413L 0.09 deleterious(0.01) possibly_damaging(0.517) TCGA-FR-A726-01 15 63084959 63084959 C T TLN2 Silent p.I1952I 0.16 TCGA-FR-A726-01 15 63930632 63930632 G A HERC1 Missense_Mutation p.P4024L 0.28 benign(0.243) TCGA-FR-A726-01 15 63958191 63958191 G A HERC1 Missense_Mutation p.P2828S 0.33 benign(0) TCGA-FR-A726-01 15 63981877 63981877 G A HERC1 Missense_Mutation p.L1987F 0.56 benign(0.189) TCGA-FR-A726-01 15 64449109 64449109 C T PPIB Splice_Site p.X115_splice 0.31 TCGA-FR-A726-01 15 65040678 65040678 G A RBPMS2 Silent p.I169I 0.35 TCGA-FR-A726-01 15 65489203 65489203 G A CILP Missense_Mutation p.P1141S 0.30 tolerated(0.74) benign(0) TCGA-FR-A726-01 15 65496732 65496732 G A CILP Missense_Mutation p.P265S 0.33 tolerated(0.09) probably_damaging(0.998) TCGA-FR-A726-01 15 65502060 65502060 G A CILP Silent p.L12L 0.09 TCGA-FR-A726-01 15 65623784 65623784 G A IGDCC3 Silent p.I454I 0.08 TCGA-FR-A726-01 15 65676464 65676464 G A IGDCC4 Silent p.D1212D 0.30 TCGA-FR-A726-01 15 66010216 66010216 G A DENND4A Silent p.F569F 0.20 TCGA-FR-A726-01 15 66840685 66840685 C T ZWILCH Intron 0.31 TCGA-FR-A726-01 15 66850188 66850188 C T LCTL Missense_Mutation p.G265E 0.33 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 15 67665766 67665766 C T IQCH Missense_Mutation p.S456L 0.33 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 15 67793024 67793024 G A IQCH Missense_Mutation p.M1008I 0.33 tolerated(0.21) benign(0.003) TCGA-FR-A726-01 15 68631977 68631977 C T ITGA11 Silent p.G379G 0.22 TCGA-FR-A726-01 15 68631978 68631978 C T ITGA11 Missense_Mutation p.G379E 0.23 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 15 69652438 69652438 C T PAQR5 Missense_Mutation p.P7S 0.29 deleterious(0) benign(0.356) TCGA-FR-A726-01 15 71272495 71272495 G A LRRC49 Missense_Mutation p.R331Q 0.46 tolerated(0.1) probably_damaging(0.989) TCGA-FR-A726-01 15 71300910 71300910 C T LRRC49 Silent p.I459I 0.20 TCGA-FR-A726-01 15 71952932 71952932 G A THSD4 Missense_Mutation p.G406R 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 71953057 71953057 G A THSD4 Silent p.K447K 0.27 TCGA-FR-A726-01 15 72191103 72191103 C T MYO9A Silent p.Q1247Q 0.07 TCGA-FR-A726-01 15 72191104 72191104 T A MYO9A Missense_Mutation p.Q1247L 0.08 deleterious_low_confidence(0.05) benign(0.041) TCGA-FR-A726-01 15 72501222 72501222 G A PKM Silent p.F192F 0.20 TCGA-FR-A726-01 15 72699522 72699522 C T TMEM202 Missense_Mutation p.L195F 0.30 tolerated(0.22) possibly_damaging(0.803) TCGA-FR-A726-01 15 73580765 73580765 C T NEO1 Silent p.P1174P 0.13 TCGA-FR-A726-01 15 73593724 73593724 C T NEO1 Missense_Mutation p.P1410S 0.31 tolerated(1) possibly_damaging(0.588) TCGA-FR-A726-01 15 73616491 73616491 C T HCN4 Silent p.E694E 0.22 TCGA-FR-A726-01 15 73617465 73617465 G A HCN4 Silent p.F603F 0.22 TCGA-FR-A726-01 15 74174086 74174086 G A TBC1D21 Silent p.R90R 0.25 TCGA-FR-A726-01 15 74244255 74244255 G A LOXL1 3'UTR 0.37 TCGA-FR-A726-01 15 74368300 74368300 G A GOLGA6A Silent p.L197L 0.16 TCGA-FR-A726-01 15 74467734 74467734 G A ISLR Missense_Mutation p.E179K 0.33 deleterious(0.04) benign(0.01) TCGA-FR-A726-01 15 74473679 74473679 C T STRA6 Missense_Mutation p.M586I 0.34 tolerated(0.21) benign(0.381) TCGA-FR-A726-01 15 74486149 74486149 C T STRA6 Missense_Mutation p.G277S 0.31 tolerated(0.5) benign(0.16) TCGA-FR-A726-01 15 74554801 74554801 A T CCDC33 Missense_Mutation p.K69M 0.40 tolerated(0.11) benign(0.146) TCGA-FR-A726-01 15 74625613 74625613 G A CCDC33 Intron 0.56 TCGA-FR-A726-01 15 74628230 74628230 G A CCDC33 Intron 0.29 TCGA-FR-A726-01 15 74628286 74628286 G A CCDC33 Missense_Mutation p.M720I 0.26 tolerated_low_confidence(0.12) benign(0) TCGA-FR-A726-01 15 74630418 74630418 G A CYP11A1 Silent p.I487I 0.29 TCGA-FR-A726-01 15 75014802 75014802 C T CYP1A1 Missense_Mutation p.E213K 0.36 deleterious(0.01) possibly_damaging(0.847) TCGA-FR-A726-01 15 75108988 75108988 C T LMAN1L Missense_Mutation p.R152C 0.34 tolerated(0.18) probably_damaging(0.959) TCGA-FR-A726-01 15 75111537 75111537 C T LMAN1L Silent p.F214F 0.31 TCGA-FR-A726-01 15 75498549 75498549 G A C15orf39 Missense_Mutation p.G54S 0.29 tolerated(0.36) benign(0.001) TCGA-FR-A726-01 15 75499624 75499624 C T C15orf39 Missense_Mutation p.A412V 0.31 deleterious(0) possibly_damaging(0.682) TCGA-FR-A726-01 15 75982424 75982424 C T CSPG4 Missense_Mutation p.D328N 0.26 tolerated(0.43) benign(0.075) TCGA-FR-A726-01 15 75982425 75982425 C T CSPG4 Silent p.L327L 0.24 TCGA-FR-A726-01 15 76074713 76074713 G A RN7SL319P 5'Flank 0.28 TCGA-FR-A726-01 15 76462208 76462208 A T C15orf27 Missense_Mutation p.I170L 0.09 tolerated(0.19) benign(0.101) TCGA-FR-A726-01 15 76484392 76484392 G A C15orf27 Silent p.P284P 0.19 TCGA-FR-A726-01 15 76630152 76630152 G A ISL2 Missense_Mutation p.G31E 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-FR-A726-01 15 77769931 77769931 A C HMG20A Missense_Mutation p.D217A 0.33 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 15 78211558 78211558 C T RP11-114H24.7 Intron 0.11 TCGA-FR-A726-01 15 78211644 78211644 G A RP11-114H24.7 Intron 0.38 TCGA-FR-A726-01 15 78346406 78346406 G A TBC1D2B Missense_Mutation p.P162S 0.33 tolerated(0.44) benign(0.001) TCGA-FR-A726-01 15 78486298 78486298 G A ACSBG1 Missense_Mutation p.S173L 0.27 deleterious(0.02) benign(0.117) TCGA-FR-A726-01 15 78805534 78805534 C T HYKK Missense_Mutation p.S35F 0.32 deleterious(0.03) benign(0.027) TCGA-FR-A726-01 15 78825912 78825912 G A HYKK Missense_Mutation p.G341E 0.30 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 15 78921894 78921894 G A CHRNB4 Silent p.I251I 0.37 TCGA-FR-A726-01 15 79083045 79083045 G A ADAMTS7 Missense_Mutation p.P332L 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 79760769 79760769 C T KIAA1024 3'UTR 0.26 TCGA-FR-A726-01 15 81201492 81201492 G A KIAA1199 Missense_Mutation p.G548R 0.27 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 15 81638748 81638748 C T TMC3 Silent p.L410L 0.39 TCGA-FR-A726-01 15 81638765 81638765 C T TMC3 Missense_Mutation p.G405R 0.35 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 15 83240332 83240332 C T CPEB1 Intron 0.33 TCGA-FR-A726-01 15 83328333 83328333 C T AP3B2 Silent p.V1076V 0.37 TCGA-FR-A726-01 15 83330671 83330671 G A AP3B2 Silent p.T955T 0.33 TCGA-FR-A726-01 15 83335619 83335619 G A AP3B2 Missense_Mutation p.R578W 0.32 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 15 83350228 83350228 C T AP3B2 Silent p.S155S 0.17 TCGA-FR-A726-01 15 83350243 83350243 G A AP3B2 Silent p.I150I 0.31 TCGA-FR-A726-01 15 83451767 83451767 C T FSD2 Missense_Mutation p.G249E 0.30 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 15 83527825 83527825 G A HOMER2 Silent p.H161H 0.21 TCGA-FR-A726-01 15 83680380 83680380 G A C15orf40 5'Flank 0.38 TCGA-FR-A726-01 15 83933212 83933212 T A BNC1 Missense_Mutation p.Y264F 0.29 tolerated(0.63) benign(0.004) TCGA-FR-A726-01 15 83935642 83935642 G A BNC1 Silent p.I127I 0.33 TCGA-FR-A726-01 15 83936890 83936890 G A BNC1 Missense_Mutation p.A65V 0.31 deleterious(0.03) possibly_damaging(0.663) TCGA-FR-A726-01 15 84373138 84373138 C T ADAMTSL3 Intron 0.31 TCGA-FR-A726-01 15 84558987 84558987 C T ADAMTSL3 Missense_Mutation p.P400L 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A726-01 15 85164666 85164666 G A ZSCAN2 Missense_Mutation p.G414R 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 15 85406008 85406008 C T ALPK3 Silent p.S1626S 0.27 TCGA-FR-A726-01 15 85478657 85478657 G A SLC28A1 Missense_Mutation p.E497K 0.35 deleterious(0) probably_damaging(0.935) TCGA-FR-A726-01 15 86118501 86118501 C T AKAP13 Missense_Mutation p.P268S 0.35 tolerated(0.05) benign(0.04) TCGA-FR-A726-01 15 86225414 86225414 C T AKAP13 Silent p.F1713F 0.29 TCGA-FR-A726-01 15 86791060 86791060 G T AGBL1 Nonsense_Mutation p.E183* 0.38 TCGA-FR-A726-01 15 86822874 86822874 C T AGBL1 Missense_Mutation p.H648Y 0.38 deleterious(0.02) possibly_damaging(0.791) TCGA-FR-A726-01 15 86838548 86838548 T C AGBL1 Silent p.V715V 0.37 TCGA-FR-A726-01 15 88420106 88420106 G A NTRK3 3'UTR 0.38 TCGA-FR-A726-01 15 88483910 88483910 G A NTRK3 Silent p.L554L 0.34 TCGA-FR-A726-01 15 88678339 88678339 G A NTRK3 Silent p.P399P 0.27 TCGA-FR-A726-01 15 88680724 88680724 C T NTRK3 Missense_Mutation p.G178E 0.36 tolerated(0.06) benign(0.341) TCGA-FR-A726-01 15 89169489 89169489 C T AEN Missense_Mutation p.L17F 0.43 tolerated_low_confidence(0.08) benign(0.016) TCGA-FR-A726-01 15 89402550 89402550 G A ACAN Missense_Mutation p.G2245E 0.34 tolerated(0.23) probably_damaging(0.996) TCGA-FR-A726-01 15 89807141 89807141 C T FANCI Missense_Mutation p.P185S 0.35 deleterious(0.02) benign(0.055) TCGA-FR-A726-01 15 90128991 90128991 C T TICRR Missense_Mutation p.S410F 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 90212813 90212813 G A PLIN1 Missense_Mutation p.S230F 0.35 tolerated(0.11) possibly_damaging(0.854) TCGA-FR-A726-01 15 90320345 90320345 C T MESP2 Missense_Mutation p.P253S 0.17 tolerated(0.09) benign(0.195) TCGA-FR-A726-01 15 90328652 90328652 C T ANPEP Silent p.T944T 0.29 TCGA-FR-A726-01 15 90349664 90349664 G A ANPEP Missense_Mutation p.P51S 0.27 tolerated(0.25) benign(0.002) TCGA-FR-A726-01 15 90784139 90784139 C T GDPGP1 5'UTR 0.25 TCGA-FR-A726-01 15 90785196 90785196 G A GDPGP1 Silent p.E352E 0.40 TCGA-FR-A726-01 15 91025444 91025444 C T IQGAP1 Silent p.F1162F 0.29 TCGA-FR-A726-01 15 91043346 91043346 C T IQGAP1 3'UTR 0.19 TCGA-FR-A726-01 15 91298084 91298084 C T BLM Missense_Mutation p.L335F 0.26 tolerated(0.26) benign(0.01) TCGA-FR-A726-01 15 91424956 91424956 C T FURIN Missense_Mutation p.R745W 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-FR-A726-01 15 91510174 91510174 G A PRC1 3'UTR 0.38 TCGA-FR-A726-01 15 91551104 91551104 A C VPS33B Missense_Mutation p.F165C 0.08 deleterious(0) probably_damaging(0.975) TCGA-FR-A726-01 15 91803625 91803625 G A SV2B Missense_Mutation p.E332K 0.26 tolerated(0.11) possibly_damaging(0.794) TCGA-FR-A726-01 15 91832881 91832881 C T SV2B Silent p.I613I 0.35 TCGA-FR-A726-01 15 93015752 93015752 G A C15orf32 Missense_Mutation p.R125K 0.28 tolerated_low_confidence(0.91) benign(0.008) TCGA-FR-A726-01 15 94910858 94910858 C T MCTP2 Silent p.L442L 0.32 TCGA-FR-A726-01 15 94928744 94928744 C T MCTP2 Missense_Mutation p.P593L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 15 95001444 95001444 G A MCTP2 Missense_Mutation p.E777K 0.26 deleterious(0) possibly_damaging(0.771) TCGA-FR-A726-01 15 95013586 95013586 C T MCTP2 Silent p.F795F 0.33 TCGA-FR-A726-01 15 95022380 95022380 C T MCTP2 3'UTR 0.23 TCGA-FR-A726-01 15 99451935 99451935 C T IGF1R Silent p.L423L 0.33 TCGA-FR-A726-01 16 10032019 10032019 G A GRIN2A Silent p.I268I 0.36 TCGA-FR-A726-01 16 10273855 10273855 C T GRIN2A Silent p.K138K 0.33 TCGA-FR-A726-01 16 10524713 10524713 C T ATF7IP2 Missense_Mutation p.S79F 0.28 deleterious(0) probably_damaging(0.959) TCGA-FR-A726-01 16 10524750 10524750 C T ATF7IP2 Silent p.F91F 0.28 TCGA-FR-A726-01 16 10788182 10788182 C T TEKT5 Silent p.V183V 0.31 TCGA-FR-A726-01 16 10997633 10997633 C T CIITA Missense_Mutation p.T273I 0.38 tolerated(0.15) benign(0.002) TCGA-FR-A726-01 16 11003023 11003023 G A CIITA Missense_Mutation p.G932E 0.24 tolerated(0.22) benign(0.065) TCGA-FR-A726-01 16 11016097 11016097 C T CIITA Missense_Mutation p.R1075W 0.28 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 16 11154788 11154788 C T CLEC16A Silent p.S675S 0.33 TCGA-FR-A726-01 16 1129741 1129741 C T SSTR5 Silent p.I291I 0.31 TCGA-FR-A726-01 16 1129964 1129964 G A SSTR5 3'UTR 0.40 TCGA-FR-A726-01 16 11444747 11444747 C T RMI2 3'UTR 0.31 TCGA-FR-A726-01 16 12618679 12618679 C T SNX29 Nonsense_Mutation p.Q767* 0.30 TCGA-FR-A726-01 16 1270001 1270001 C T CACNA1H Silent p.S2023S 0.27 TCGA-FR-A726-01 16 1270629 1270629 G A CACNA1H Missense_Mutation p.E2233K 0.26 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FR-A726-01 16 1292262 1292262 C T TPSAB1 3'UTR 0.33 TCGA-FR-A726-01 16 1389152 1389152 G A BAIAP3 Intron 0.44 TCGA-FR-A726-01 16 1391465 1391465 C T BAIAP3 Missense_Mutation p.P271S 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 1398383 1398383 G A BAIAP3 Missense_Mutation p.R1155K 0.26 tolerated(0.91) benign(0.002) TCGA-FR-A726-01 16 14334148 14334148 C T MKL2 Missense_Mutation p.P296S 0.31 tolerated(0.35) possibly_damaging(0.881) TCGA-FR-A726-01 16 14341234 14341234 C T MKL2 Intron 0.17 TCGA-FR-A726-01 16 14341249 14341249 T C MKL2 Intron 0.20 TCGA-FR-A726-01 16 14687203 14687203 C A PARN Missense_Mutation p.L291F 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 1509187 1509187 G T CLCN7 Missense_Mutation p.P199Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 16 15494687 15494687 G A MPV17L Silent p.L118L 0.37 TCGA-FR-A726-01 16 1570762 1570762 G A IFT140 Silent p.T1167T 0.37 TCGA-FR-A726-01 16 1621515 1621515 G A IFT140 Silent p.L515L 0.21 TCGA-FR-A726-01 16 16295914 16295914 G A ABCC6 Missense_Mutation p.L374F 0.39 deleterious(0.03) benign(0.033) TCGA-FR-A726-01 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.30 TCGA-FR-A726-01 16 17228396 17228396 G A XYLT1 Missense_Mutation p.S654F 0.28 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 16 1827830 1827830 C T SPSB3 Silent p.R213R 0.43 TCGA-FR-A726-01 16 18584210 18584210 G A RP11-457I16.2 5'Flank 0.28 TCGA-FR-A726-01 16 18794349 18794349 G A RPS15A Silent p.I125I 0.36 TCGA-FR-A726-01 16 1884208 1884208 G A MEIOB 3'UTR 0.35 TCGA-FR-A726-01 16 1894899 1894899 C T MEIOB Missense_Mutation p.D282N 0.23 tolerated(0.1) benign(0.029) TCGA-FR-A726-01 16 19056710 19056710 C T TMC7 Silent p.F501F 0.37 TCGA-FR-A726-01 16 19058524 19058524 C T TMC7 Missense_Mutation p.P565S 0.29 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 16 19070744 19070744 C T TMC7 Silent p.I678I 0.30 TCGA-FR-A726-01 16 19126330 19126330 C T ITPRIPL2 Missense_Mutation p.P183S 0.34 deleterious(0) probably_damaging(0.968) TCGA-FR-A726-01 16 19126497 19126497 G A ITPRIPL2 Silent p.V238V 0.29 TCGA-FR-A726-01 16 19126597 19126597 G A ITPRIPL2 Missense_Mutation p.G272R 0.29 tolerated(0.05) benign(0.272) TCGA-FR-A726-01 16 19191748 19191748 C T SYT17 Missense_Mutation p.S73F 0.34 deleterious(0) possibly_damaging(0.451) TCGA-FR-A726-01 16 19451834 19451834 C T TMC5 Silent p.S158S 0.28 TCGA-FR-A726-01 16 19539266 19539266 C T CCP110 Silent p.S21S 0.38 TCGA-FR-A726-01 16 19590362 19590362 C T C16orf62 Intron 0.39 TCGA-FR-A726-01 16 19680597 19680597 C T C16orf62 Silent p.F868F 0.15 TCGA-FR-A726-01 16 20043775 20043775 G A GPR139 Missense_Mutation p.S115F 0.09 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 16 20043798 20043798 C T GPR139 Silent p.L107L 0.41 TCGA-FR-A726-01 16 20043822 20043822 G A GPR139 Silent p.V99V 0.31 TCGA-FR-A726-01 16 2013234 2013234 G A RPS2 Silent p.F97F 0.21 TCGA-FR-A726-01 16 20329667 20329667 C T GP2 Missense_Mutation p.E368K 0.33 deleterious(0.04) possibly_damaging(0.833) TCGA-FR-A726-01 16 20360527 20360527 G A UMOD Silent p.C32C 0.37 TCGA-FR-A726-01 16 20370580 20370580 C T PDILT 3'UTR 0.36 TCGA-FR-A726-01 16 20477043 20477043 C T ACSM2A Nonsense_Mutation p.R128* 0.17 TCGA-FR-A726-01 16 20480946 20480946 G A ACSM2A Silent p.V167V 0.31 TCGA-FR-A726-01 16 20497934 20497934 G A ACSM2A Silent p.G556G 0.31 TCGA-FR-A726-01 16 20498209 20498209 A G ACSM2A 3'UTR 0.30 TCGA-FR-A726-01 16 20548400 20548400 C T ACSM2B 3'UTR 0.24 TCGA-FR-A726-01 16 20548490 20548490 G A ACSM2B 3'UTR 0.24 TCGA-FR-A726-01 16 20548529 20548529 G A ACSM2B 3'UTR 0.37 TCGA-FR-A726-01 16 20548624 20548624 G A ACSM2B Nonsense_Mutation p.R564* 0.31 TCGA-FR-A726-01 16 20548646 20548646 C T ACSM2B Silent p.G556G 0.31 TCGA-FR-A726-01 16 20557777 20557777 G A ACSM2B Missense_Mutation p.S373F 0.21 tolerated(1) benign(0.081) TCGA-FR-A726-01 16 20570704 20570704 C T ACSM2B Nonsense_Mutation p.W81* 0.28 TCGA-FR-A726-01 16 20787233 20787233 G A ACSM3 Missense_Mutation p.E98K 0.37 tolerated(0.08) possibly_damaging(0.755) TCGA-FR-A726-01 16 20944818 20944818 T G DNAH3 Missense_Mutation p.Q4003H 0.35 tolerated(0.27) benign(0.035) TCGA-FR-A726-01 16 20976497 20976497 G A DNAH3 Silent p.P2903P 0.06 TCGA-FR-A726-01 16 20994193 20994193 C T DNAH3 Missense_Mutation p.G2570E 0.27 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 16 20996974 20996974 C T DNAH3 Missense_Mutation p.G2364R 0.35 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A726-01 16 21060897 21060897 C T DNAH3 Missense_Mutation p.R1485K 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 21063139 21063139 C T DNAH3 Missense_Mutation p.D1364N 0.23 deleterious(0.03) possibly_damaging(0.686) TCGA-FR-A726-01 16 21071648 21071648 C T DNAH3 Silent p.V1250V 0.33 TCGA-FR-A726-01 16 21078695 21078695 C T DNAH3 Missense_Mutation p.A1143T 0.31 tolerated(0.07) benign(0.001) TCGA-FR-A726-01 16 21078696 21078696 C T DNAH3 Missense_Mutation p.M1142I 0.31 tolerated(0.1) possibly_damaging(0.491) TCGA-FR-A726-01 16 21221024 21221024 C T ZP2 Silent p.P86P 0.38 TCGA-FR-A726-01 16 21261762 21261762 G A ANKS4B Missense_Mutation p.R292K 0.16 tolerated(0.18) benign(0.101) TCGA-FR-A726-01 16 2140146 2140146 G A PKD1 Missense_Mutation p.S4165F 0.33 possibly_damaging(0.897) TCGA-FR-A726-01 16 2168223 2168223 G A PKD1 Missense_Mutation p.P257L 0.54 benign(0.013) TCGA-FR-A726-01 16 21716300 21716300 C T OTOA Intron 0.33 TCGA-FR-A726-01 16 22163864 22163864 C T VWA3A Missense_Mutation p.S1105F 0.28 tolerated(0.07) benign(0.088) TCGA-FR-A726-01 16 22441146 22441146 G A RRN3P3 RNA 0.28 TCGA-FR-A726-01 16 22563733 22563733 C T RP11-368J21.3 RNA 0.14 TCGA-FR-A726-01 16 22563767 22563767 C T RP11-368J21.3 RNA 0.10 TCGA-FR-A726-01 16 2259472 2259472 C T BRICD5 Intron 0.37 TCGA-FR-A726-01 16 23091449 23091449 G A USP31 Missense_Mutation p.P665L 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 2327618 2327618 G A ABCA3 Missense_Mutation p.R1655C 0.22 deleterious(0.01) benign(0) TCGA-FR-A726-01 16 2335471 2335471 G A ABCA3 Missense_Mutation p.S1152F 0.38 tolerated(0.11) benign(0.056) TCGA-FR-A726-01 16 23364217 23364217 C T SCNN1B Missense_Mutation p.A136V 0.06 tolerated(0.29) benign(0.014) TCGA-FR-A726-01 16 23404643 23404643 G A COG7 Missense_Mutation p.P638L 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 2349459 2349459 G A ABCA3 Silent p.T562T 0.38 TCGA-FR-A726-01 16 23541227 23541227 G A EARS2 Intron 0.32 TCGA-FR-A726-01 16 23640578 23640578 G A PALB2 Missense_Mutation p.P845S 0.24 deleterious(0.04) probably_damaging(0.976) TCGA-FR-A726-01 16 23714024 23714024 C T ERN2 Splice_Site p.X333_splice 0.29 TCGA-FR-A726-01 16 23718361 23718361 G A ERN2 Missense_Mutation p.P164S 0.31 deleterious(0) probably_damaging(0.955) TCGA-FR-A726-01 16 23722238 23722238 C T ERN2 Silent p.R113R 0.36 TCGA-FR-A726-01 16 2376079 2376079 G A ABCA3 Missense_Mutation p.P84L 0.27 deleterious(0) probably_damaging(0.939) TCGA-FR-A726-01 16 23767209 23767209 C T CHP2 Missense_Mutation p.P61L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 23767210 23767210 C T CHP2 Silent p.P61P 0.30 TCGA-FR-A726-01 16 242975 242975 G A LUC7L Missense_Mutation p.R243C 0.35 deleterious(0.02) unknown(0) TCGA-FR-A726-01 16 24582761 24582761 C T RBBP6 Silent p.S1458S 0.07 TCGA-FR-A726-01 16 2487227 2487227 C T CCNF Silent p.F148F 0.12 TCGA-FR-A726-01 16 24895388 24895388 G A SLC5A11 Silent p.V200V 0.31 TCGA-FR-A726-01 16 2546112 2546112 C T RP11-20I23.1 5'UTR 0.34 TCGA-FR-A726-01 16 25704442 25704442 G A HS3ST4 Missense_Mutation p.R235K 0.30 tolerated(0.16) possibly_damaging(0.494) TCGA-FR-A726-01 16 27078357 27078357 G A C16orf82 RNA 0.32 TCGA-FR-A726-01 16 27445730 27445730 G A IL21R Missense_Mutation p.E38K 0.43 tolerated(0.07) benign(0.066) TCGA-FR-A726-01 16 27455990 27455990 G A IL21R Missense_Mutation p.G212E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 16 27457334 27457334 G A IL21R Nonsense_Mutation p.W264* 0.26 TCGA-FR-A726-01 16 27460315 27460315 G A IL21R Missense_Mutation p.G443E 0.29 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 16 27480857 27480857 C T GTF3C1 Missense_Mutation p.G1610D 0.29 tolerated(0.1) possibly_damaging(0.873) TCGA-FR-A726-01 16 2813494 2813494 C T SRRM2 Missense_Mutation p.H989Y 0.29 unknown(0) TCGA-FR-A726-01 16 2813750 2813750 C T SRRM2 Missense_Mutation p.P1074L 0.30 unknown(0) TCGA-FR-A726-01 16 28167730 28167730 G A XPO6 Silent p.A254A 0.25 TCGA-FR-A726-01 16 2817066 2817066 C T SRRM2 Silent p.S2179S 0.30 TCGA-FR-A726-01 16 2817500 2817500 C T SRRM2 Missense_Mutation p.P2324L 0.29 probably_damaging(0.999) TCGA-FR-A726-01 16 2825462 2825462 G A TCEB2 Silent p.A78A 0.24 TCGA-FR-A726-01 16 28507221 28507221 C T APOBR Missense_Mutation p.P287S 0.29 tolerated(1) benign(0.012) TCGA-FR-A726-01 16 28515238 28515238 C T IL27 Silent p.R55R 0.29 TCGA-FR-A726-01 16 28550164 28550164 G A NUPR1 Missense_Mutation p.S22F 0.34 tolerated(0.48) benign(0.003) TCGA-FR-A726-01 16 28602162 28602162 C T CCDC101 Missense_Mutation p.P224L 0.27 deleterious(0.04) benign(0.074) TCGA-FR-A726-01 16 28847405 28847405 C T ATXN2L Missense_Mutation p.S1016F 0.32 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 16 28926071 28926071 G A RABEP2 Silent p.I155I 0.36 TCGA-FR-A726-01 16 28944656 28944656 G A CD19 Missense_Mutation p.G221R 0.40 tolerated(0.23) benign(0.005) TCGA-FR-A726-01 16 28949094 28949094 C T CD19 Silent p.F478F 0.29 TCGA-FR-A726-01 16 28950207 28950207 G A CD19 Missense_Mutation p.E533K 0.46 deleterious(0) probably_damaging(0.953) TCGA-FR-A726-01 16 28970012 28970012 C T NFATC2IP Intron 0.22 TCGA-FR-A726-01 16 30012753 30012753 C T INO80E Missense_Mutation p.P139S 0.40 tolerated(1) benign(0) TCGA-FR-A726-01 16 30035705 30035705 C T C16orf92 3'UTR 0.33 TCGA-FR-A726-01 16 30102222 30102222 G A TBX6 Silent p.P70P 0.39 TCGA-FR-A726-01 16 30129371 30129371 G A MAPK3 Silent p.S219S 0.33 TCGA-FR-A726-01 16 304446 304446 C T ITFG3 Missense_Mutation p.H12Y 0.34 deleterious(0.02) benign(0.125) TCGA-FR-A726-01 16 30536209 30536209 G A ZNF768 Missense_Mutation p.P418S 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.844) TCGA-FR-A726-01 16 30536210 30536210 G A ZNF768 Silent p.I417I 0.11 TCGA-FR-A726-01 16 30581483 30581483 G A ZNF688 Silent p.P195P 0.31 TCGA-FR-A726-01 16 3063854 3063854 T G CLDN9 Missense_Mutation p.L164R 0.36 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 16 30667535 30667535 C T PRR14 Missense_Mutation p.P554L 0.32 tolerated(0.29) benign(0.005) TCGA-FR-A726-01 16 30735279 30735279 G A SRCAP Missense_Mutation p.A1512T 0.35 possibly_damaging(0.483) TCGA-FR-A726-01 16 30736040 30736040 T G SRCAP Silent p.A1765A 0.11 TCGA-FR-A726-01 16 30740727 30740727 C T SRCAP Silent p.P1987P 0.09 TCGA-FR-A726-01 16 30740862 30740862 C T SRCAP Silent p.F2032F 0.31 TCGA-FR-A726-01 16 30744681 30744681 C T SRCAP Nonsense_Mutation p.R2070* 0.31 TCGA-FR-A726-01 16 30764597 30764597 C T PHKG2 Missense_Mutation p.A124V 0.32 deleterious(0) benign(0.034) TCGA-FR-A726-01 16 30776802 30776802 C T RNF40 Silent p.I325I 0.31 TCGA-FR-A726-01 16 30795437 30795437 G A ZNF629 Missense_Mutation p.S71F 0.44 deleterious_low_confidence(0.02) benign(0.172) TCGA-FR-A726-01 16 30990593 30990593 G A SETD1A Silent p.K1162K 0.23 TCGA-FR-A726-01 16 31073580 31073580 G A ZNF668 Silent p.P246P 0.26 TCGA-FR-A726-01 16 31075511 31075511 G A ZNF668 Silent p.P113P 0.24 TCGA-FR-A726-01 16 31087899 31087899 C T ZNF646 Missense_Mutation p.S85F 0.26 deleterious(0.01) benign(0.044) TCGA-FR-A726-01 16 31091377 31091377 C T ZNF646 Silent p.S1244S 0.24 TCGA-FR-A726-01 16 31096236 31096236 C T PRSS53 Missense_Mutation p.D382N 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 31142523 31142523 C T KAT8 3'UTR 0.22 TCGA-FR-A726-01 16 31154767 31154767 C T PRSS36 Silent p.G332G 0.29 TCGA-FR-A726-01 16 31154937 31154937 C T PRSS36 Silent p.R314R 0.36 TCGA-FR-A726-01 16 31235607 31235607 G A TRIM72 Missense_Mutation p.G322E 0.32 tolerated(0.09) benign(0.371) TCGA-FR-A726-01 16 31340585 31340585 C T ITGAM Silent p.A944A 0.26 TCGA-FR-A726-01 16 31371245 31371245 C T ITGAX Missense_Mutation p.S189F 0.35 deleterious(0) probably_damaging(0.945) TCGA-FR-A726-01 16 3139818 3139818 G A ZSCAN10 Silent p.A484A 0.55 TCGA-FR-A726-01 16 3139879 3139879 C T ZSCAN10 Missense_Mutation p.R464Q 0.29 tolerated(0.2) benign(0.003) TCGA-FR-A726-01 16 31422168 31422168 G A ITGAD Nonsense_Mutation p.W442* 0.36 TCGA-FR-A726-01 16 31435209 31435209 C T ITGAD Missense_Mutation p.P1030L 0.20 deleterious(0.04) possibly_damaging(0.468) TCGA-FR-A726-01 16 31471138 31471138 C T ARMC5 Missense_Mutation p.S98L 0.23 tolerated_low_confidence(0.12) unknown(0) TCGA-FR-A726-01 16 31471177 31471177 C T ARMC5 Missense_Mutation p.P111L 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-FR-A726-01 16 31488651 31488651 G T TGFB1I1 Silent p.S380S 0.21 TCGA-FR-A726-01 16 31512027 31512027 G A C16orf58 Silent p.I147I 0.39 TCGA-FR-A726-01 16 31927041 31927041 C T ZNF267 Missense_Mutation p.P491S 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-FR-A726-01 16 3254567 3254567 C T OR1F1 Silent p.F107F 0.28 TCGA-FR-A726-01 16 3254813 3254813 C T OR1F1 Silent p.C189C 0.32 TCGA-FR-A726-01 16 3255187 3255187 G A OR1F1 3'UTR 0.27 TCGA-FR-A726-01 16 3336086 3336086 C T ZNF263 Missense_Mutation p.P236S 0.20 tolerated(0.65) probably_damaging(0.918) TCGA-FR-A726-01 16 3406471 3406471 C T OR2C1 Silent p.F177F 0.25 TCGA-FR-A726-01 16 3458670 3458670 C T ZNF174 Silent p.P325P 0.38 TCGA-FR-A726-01 16 3458966 3458966 C T ZNF174 3'UTR 0.31 TCGA-FR-A726-01 16 3611756 3611756 C T NLRC3 Missense_Mutation p.M701I 0.29 deleterious(0.01) benign(0.044) TCGA-FR-A726-01 16 3789592 3789592 G A CREBBP Missense_Mutation p.P1423S 0.19 unknown(0) TCGA-FR-A726-01 16 422718 422718 G A TMEM8A Missense_Mutation p.L638F 0.28 deleterious(0.01) possibly_damaging(0.836) TCGA-FR-A726-01 16 4242171 4242171 G A SRL Missense_Mutation p.R469C 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FR-A726-01 16 426297 426297 G A TMEM8A Missense_Mutation p.P355S 0.26 tolerated(0.07) benign(0.066) TCGA-FR-A726-01 16 4310097 4310097 G A TFAP4 Silent p.I272I 0.26 TCGA-FR-A726-01 16 46741635 46741635 T C MYLK3 Missense_Mutation p.K814R 0.45 tolerated(0.58) benign(0.39) TCGA-FR-A726-01 16 47117415 47117415 G A NETO2 Missense_Mutation p.S432F 0.11 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 16 47733402 47733402 C T PHKB 3'UTR 0.47 TCGA-FR-A726-01 16 4786481 4786481 G A C16orf71 5'UTR 0.40 TCGA-FR-A726-01 16 48158182 48158182 C T ABCC12 Missense_Mutation p.G510E 0.10 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 16 48245039 48245039 A C ABCC11 Missense_Mutation p.F476L 0.11 tolerated(1) benign(0) TCGA-FR-A726-01 16 4895076 4895076 G A GLYR1 Missense_Mutation p.H52Y 0.25 tolerated(0.67) benign(0.249) TCGA-FR-A726-01 16 49407869 49407869 G A C16orf78 Missense_Mutation p.D7N 0.47 tolerated(0.17) benign(0.002) TCGA-FR-A726-01 16 49430546 49430546 G A C16orf78 Missense_Mutation p.E203K 0.47 deleterious(0.01) possibly_damaging(0.877) TCGA-FR-A726-01 16 49557594 49557594 C T ZNF423 Missense_Mutation p.D1256N 0.57 tolerated(0.1) possibly_damaging(0.833) TCGA-FR-A726-01 16 50326709 50326709 G A ADCY7 Silent p.R220R 0.10 TCGA-FR-A726-01 16 50335126 50335126 G A ADCY7 Splice_Site p.X456_splice 0.47 TCGA-FR-A726-01 16 50349380 50349380 G A ADCY7 Silent p.T1069T 0.12 TCGA-FR-A726-01 16 5040863 5040863 C T SEC14L5 Silent p.I147I 0.44 TCGA-FR-A726-01 16 5057362 5057362 C T SEC14L5 Missense_Mutation p.P483S 0.14 tolerated(0.08) benign(0.015) TCGA-FR-A726-01 16 50666288 50666288 G A NKD1 Silent p.G264G 0.09 TCGA-FR-A726-01 16 50733521 50733521 C T NOD2 Missense_Mutation p.L66F 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 16 50733611 50733611 G A NOD2 Missense_Mutation p.G96S 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 50759450 50759450 G A NOD2 Missense_Mutation p.G978E 0.43 tolerated(0.08) possibly_damaging(0.694) TCGA-FR-A726-01 16 51173575 51173575 G A SALL1 Missense_Mutation p.S853F 0.47 deleterious(0.02) possibly_damaging(0.862) TCGA-FR-A726-01 16 52473243 52473243 G A TOX3 Missense_Mutation p.S542F 0.47 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 16 55705805 55705805 G A SLC6A2 Intron 0.52 TCGA-FR-A726-01 16 55844484 55844484 C T CES1 Silent p.L421L 0.47 TCGA-FR-A726-01 16 55844895 55844895 C T CES1 Missense_Mutation p.G372R 0.63 tolerated(0.08) possibly_damaging(0.56) TCGA-FR-A726-01 16 56448184 56448184 G A AMFR Missense_Mutation p.L110F 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 57111225 57111225 T A NLRC5 Missense_Mutation p.I1618N 0.64 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 16 57394368 57394368 G A CCL22 Missense_Mutation p.M31I 0.54 tolerated(0.06) benign(0.015) TCGA-FR-A726-01 16 57604361 57604361 C T GPR114 Silent p.L374L 0.55 TCGA-FR-A726-01 16 57732922 57732922 G A CCDC135 Missense_Mutation p.E122K 0.17 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 16 57760012 57760012 G A CCDC135 Silent p.A597A 0.15 TCGA-FR-A726-01 16 57949178 57949178 A T CNGB1 Missense_Mutation p.L760H 0.41 deleterious(0) probably_damaging(0.959) TCGA-FR-A726-01 16 58071445 58071445 A T MMP15 Missense_Mutation p.I78F 0.53 deleterious(0.02) probably_damaging(0.919) TCGA-FR-A726-01 16 58314723 58314723 C T CCDC113 3'UTR 0.56 TCGA-FR-A726-01 16 58587750 58587750 G A CNOT1 Missense_Mutation p.P969L 0.51 deleterious(0.01) benign(0.313) TCGA-FR-A726-01 16 58714117 58714117 G A SLC38A7 5'UTR 0.40 TCGA-FR-A726-01 16 615187 615187 C T C16orf11 Silent p.L532L 0.32 TCGA-FR-A726-01 16 61689619 61689619 G A CDH8 Missense_Mutation p.S554F 0.30 deleterious(0.01) possibly_damaging(0.507) TCGA-FR-A726-01 16 61747793 61747793 G A CDH8 Missense_Mutation p.L536F 0.47 deleterious(0.01) possibly_damaging(0.617) TCGA-FR-A726-01 16 61747794 61747794 G A CDH8 Silent p.L535L 0.48 TCGA-FR-A726-01 16 61935293 61935293 C T CDH8 Missense_Mutation p.D113N 0.38 deleterious(0.02) benign(0.164) TCGA-FR-A726-01 16 62055113 62055113 C T CDH8 Nonsense_Mutation p.W65* 0.51 TCGA-FR-A726-01 16 62055248 62055248 C T CDH8 Nonsense_Mutation p.W20* 0.50 TCGA-FR-A726-01 16 64982577 64982577 G A CDH11 Intron 0.55 TCGA-FR-A726-01 16 64984701 64984701 G A CDH11 Silent p.I621I 0.43 TCGA-FR-A726-01 16 66600698 66600698 C T CMTM1 Silent p.P94P 0.63 TCGA-FR-A726-01 16 66966055 66966055 G A FAM96B 3'UTR 0.33 TCGA-FR-A726-01 16 66997759 66997759 G A CES3 Missense_Mutation p.D161N 0.42 deleterious(0.03) possibly_damaging(0.895) TCGA-FR-A726-01 16 67214452 67214452 G A KIAA0895L Missense_Mutation p.P21L 0.09 tolerated_low_confidence(0.09) benign(0.002) TCGA-FR-A726-01 16 67221583 67221583 G A EXOC3L1 Silent p.F195F 0.56 TCGA-FR-A726-01 16 67223010 67223010 G T EXOC3L1 Silent p.I40I 0.36 TCGA-FR-A726-01 16 67323565 67323565 C T KCTD19 Silent p.R896R 0.50 TCGA-FR-A726-01 16 67327935 67327935 C T KCTD19 Missense_Mutation p.R577Q 0.50 deleterious(0.03) benign(0.004) TCGA-FR-A726-01 16 67690508 67690508 G A RLTPR Silent p.L1332L 0.38 TCGA-FR-A726-01 16 67914622 67914622 C T EDC4 Missense_Mutation p.R754C 0.43 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-FR-A726-01 16 67980408 67980408 G A SLC12A4 Silent p.S792S 0.44 TCGA-FR-A726-01 16 68011667 68011667 C T DPEP3 Silent p.L299L 0.43 TCGA-FR-A726-01 16 68021350 68021350 G A DPEP2 3'UTR 0.48 TCGA-FR-A726-01 16 68398711 68398711 C T SMPD3 Missense_Mutation p.E500K 0.69 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 16 69727832 69727832 C T NFAT5 Silent p.P1368P 0.44 TCGA-FR-A726-01 16 69776145 69776145 G A NOB1 3'UTR 0.50 TCGA-FR-A726-01 16 69783232 69783232 G A NOB1 Missense_Mutation p.P137S 0.40 tolerated(0.38) benign(0.001) TCGA-FR-A726-01 16 70010572 70010572 C T PDXDC2P RNA 0.25 TCGA-FR-A726-01 16 70211272 70211272 G A CLEC18C Silent p.A115A 0.16 TCGA-FR-A726-01 16 70211273 70211273 G A CLEC18C Missense_Mutation p.G116S 0.18 tolerated(0.1) benign(0.258) TCGA-FR-A726-01 16 70366936 70366936 C T DDX19B Missense_Mutation p.P418S 0.11 deleterious(0.02) probably_damaging(0.981) TCGA-FR-A726-01 16 705409 705409 C T WDR90 Silent p.F553F 0.23 TCGA-FR-A726-01 16 70712215 70712215 C T MTSS1L Silent p.R188R 0.53 TCGA-FR-A726-01 16 70778477 70778477 G A VAC14 Silent p.I459I 0.09 TCGA-FR-A726-01 16 70913292 70913292 C T HYDIN Missense_Mutation p.G3489R 0.42 probably_damaging(0.991) TCGA-FR-A726-01 16 70935101 70935101 C T HYDIN Missense_Mutation p.E2952K 0.10 possibly_damaging(0.801) TCGA-FR-A726-01 16 70954507 70954507 G A HYDIN Missense_Mutation p.P2591L 0.62 probably_damaging(0.958) TCGA-FR-A726-01 16 70955073 70955073 C T HYDIN Silent p.R2402R 0.41 TCGA-FR-A726-01 16 71318089 71318089 T A CMTR2 Nonsense_Mutation p.K579* 0.56 TCGA-FR-A726-01 16 72132922 72132922 C T DHX38 Silent p.T287T 0.56 TCGA-FR-A726-01 16 72163085 72163085 C G PMFBP1 Missense_Mutation p.Q610H 0.50 tolerated(0.09) benign(0.024) TCGA-FR-A726-01 16 72821626 72821626 C T ZFHX3 Missense_Mutation p.G3517S 0.14 unknown(0) TCGA-FR-A726-01 16 731965 731965 C T JMJD8 3'UTR 0.26 TCGA-FR-A726-01 16 739257 739257 G A WDR24 Silent p.F128F 0.34 TCGA-FR-A726-01 16 75513136 75513136 G A CHST6 Silent p.I197I 0.14 TCGA-FR-A726-01 16 75563848 75563848 C T CHST5 Nonsense_Mutation p.W145* 0.58 TCGA-FR-A726-01 16 75668164 75668164 G A KARS Silent p.I302I 0.59 TCGA-FR-A726-01 16 7645641 7645641 G A RBFOX1 Missense_Mutation p.E207K 0.30 deleterious(0) benign(0.39) TCGA-FR-A726-01 16 773002 773002 C T CCDC78 Missense_Mutation p.G406E 0.23 tolerated(0.28) benign(0.032) TCGA-FR-A726-01 16 77401524 77401524 G A ADAMTS18 Missense_Mutation p.H198Y 0.47 tolerated(0.16) possibly_damaging(0.723) TCGA-FR-A726-01 16 77756457 77756457 G A NUDT7 5'UTR 0.70 TCGA-FR-A726-01 16 77850907 77850907 G A VAT1L Missense_Mutation p.G108E 0.50 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 16 787340 787340 G A NARFL Intron 0.23 TCGA-FR-A726-01 16 80642033 80642033 C T CDYL2 Missense_Mutation p.E440K 0.50 deleterious(0.01) possibly_damaging(0.505) TCGA-FR-A726-01 16 81253781 81253781 G A PKD1L2 Silent p.F65F 0.49 TCGA-FR-A726-01 16 81703748 81703748 A C CMIP Missense_Mutation p.D276A 0.31 deleterious(0) benign(0.129) TCGA-FR-A726-01 16 81703749 81703749 C T CMIP Silent p.D276D 0.31 TCGA-FR-A726-01 16 81888120 81888120 C T PLCG2 Missense_Mutation p.R89C 0.52 deleterious(0.04) possibly_damaging(0.487) TCGA-FR-A726-01 16 81944261 81944261 T A PLCG2 Missense_Mutation p.C624S 0.54 tolerated(0.48) probably_damaging(0.988) TCGA-FR-A726-01 16 82032687 82032687 C T SDR42E1 3'UTR 0.57 TCGA-FR-A726-01 16 82124590 82124590 C T HSD17B2 Missense_Mutation p.L250F 0.43 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 824434 824434 G A MSLNL Silent p.L603L 0.57 TCGA-FR-A726-01 16 832030 832030 G A MSLNL Silent p.P31P 0.27 TCGA-FR-A726-01 16 83636123 83636123 G A CDH13 Missense_Mutation p.G389E 0.52 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 16 84256380 84256380 C T KCNG4 Missense_Mutation p.V335I 0.18 tolerated(0.14) benign(0.168) TCGA-FR-A726-01 16 84520283 84520283 G A TLDC1 Silent p.F304F 0.09 TCGA-FR-A726-01 16 85690055 85690055 G A GSE1 Missense_Mutation p.E366K 0.70 tolerated(0.14) unknown(0) TCGA-FR-A726-01 16 85953803 85953803 C T IRF8 Silent p.P359P 0.62 TCGA-FR-A726-01 16 86602406 86602406 C T FOXC2 Missense_Mutation p.R489C 0.58 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 16 87364999 87364999 G A FBXO31 Silent p.S505S 0.42 TCGA-FR-A726-01 16 87365000 87365000 G A FBXO31 Missense_Mutation p.S505F 0.42 tolerated(0.58) probably_damaging(0.989) TCGA-FR-A726-01 16 8839943 8839943 G A ABAT Silent p.G52G 0.30 TCGA-FR-A726-01 16 88664623 88664623 C T ZC3H18 Silent p.H242H 0.09 TCGA-FR-A726-01 16 8873388 8873388 C T ABAT Missense_Mutation p.S441F 0.41 deleterious(0) possibly_damaging(0.543) TCGA-FR-A726-01 16 89261437 89261437 C T CDH15 Silent p.F773F 0.65 TCGA-FR-A726-01 16 89261637 89261637 C T CDH15 3'UTR 0.64 TCGA-FR-A726-01 16 89348096 89348096 G A ANKRD11 Silent p.P1618P 0.15 TCGA-FR-A726-01 16 9858656 9858656 C T GRIN2A Missense_Mutation p.M915I 0.33 tolerated(0.59) benign(0.002) TCGA-FR-A726-01 16 9934799 9934799 G A GRIN2A Silent p.I497I 0.36 TCGA-FR-A726-01 17 10204986 10204986 C G MYH13 Missense_Mutation p.R1901P 0.28 deleterious(0) possibly_damaging(0.722) TCGA-FR-A726-01 17 10216611 10216611 C T MYH13 Missense_Mutation p.E1349K 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A726-01 17 10223556 10223556 C T MYH13 Missense_Mutation p.E1088K 0.16 deleterious(0) benign(0.26) TCGA-FR-A726-01 17 10227460 10227460 G A MYH13 Missense_Mutation p.S938F 0.29 deleterious(0) benign(0.013) TCGA-FR-A726-01 17 10231231 10231231 C T MYH13 Missense_Mutation p.M881I 0.36 deleterious(0.05) benign(0.057) TCGA-FR-A726-01 17 10231403 10231403 G A MYH13 Missense_Mutation p.S824F 0.28 deleterious(0) possibly_damaging(0.666) TCGA-FR-A726-01 17 10243469 10243469 G A MYH13 Missense_Mutation p.P685L 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 10243470 10243470 G A MYH13 Missense_Mutation p.P685S 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-FR-A726-01 17 10243511 10243511 G A MYH13 Missense_Mutation p.P671L 0.31 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 17 10243512 10243512 G A MYH13 Missense_Mutation p.P671S 0.31 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 17 10243690 10243690 C T MYH13 Silent p.G641G 0.30 TCGA-FR-A726-01 17 10261133 10261133 C T MYH13 Silent p.E219E 0.25 TCGA-FR-A726-01 17 10295933 10295933 C T MYH8 Missense_Mutation p.E1832K 0.38 deleterious(0) possibly_damaging(0.533) TCGA-FR-A726-01 17 10296256 10296256 C T MYH8 Missense_Mutation p.M1785I 0.33 tolerated(0.06) benign(0.345) TCGA-FR-A726-01 17 10296479 10296479 G A MYH8 Nonsense_Mutation p.Q1739* 0.25 TCGA-FR-A726-01 17 10303938 10303938 C T MYH8 Silent p.K1168K 0.29 TCGA-FR-A726-01 17 10304869 10304869 C T MYH8 Silent p.T974T 0.26 TCGA-FR-A726-01 17 10304995 10304995 C T MYH8 Silent p.E932E 0.27 TCGA-FR-A726-01 17 10307824 10307824 G A MYH8 Silent p.F837F 0.32 TCGA-FR-A726-01 17 10314225 10314225 C T MYH8 Missense_Mutation p.E486K 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A726-01 17 10346676 10346676 C T MYH4 3'UTR 0.41 TCGA-FR-A726-01 17 10352238 10352238 C T MYH4 Silent p.V1436V 0.27 TCGA-FR-A726-01 17 10353906 10353906 C T MYH4 Missense_Mutation p.E1349K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 17 10355407 10355407 G A MYH4 Missense_Mutation p.R1197W 0.34 deleterious(0) probably_damaging(0.971) TCGA-FR-A726-01 17 10357101 10357101 C T MYH4 Silent p.E931E 0.33 TCGA-FR-A726-01 17 10368838 10368838 G A MYH4 Silent p.A142A 0.37 TCGA-FR-A726-01 17 10369979 10369979 C T MYH4 Silent p.Q28Q 0.32 TCGA-FR-A726-01 17 10370060 10370060 C T MYH4 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-FR-A726-01 17 10398601 10398601 C T MYH1 Missense_Mutation p.E1735K 0.39 deleterious(0) benign(0.283) TCGA-FR-A726-01 17 10408132 10408132 G A MYH1 Nonsense_Mutation p.Q896* 0.29 TCGA-FR-A726-01 17 10408551 10408551 C T MYH1 Silent p.L788L 0.26 TCGA-FR-A726-01 17 10408829 10408829 C T MYH1 Splice_Site p.X725_splice 0.32 TCGA-FR-A726-01 17 10415489 10415489 G A MYH1 Missense_Mutation p.L390F 0.06 deleterious(0.01) probably_damaging(0.969) TCGA-FR-A726-01 17 10419996 10419996 C T MYH1 5'UTR 0.39 TCGA-FR-A726-01 17 10432198 10432198 C T MYH2 Missense_Mutation p.E1185K 0.39 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 17 10438597 10438597 G A MYH2 Missense_Mutation p.P687L 0.29 deleterious(0) probably_damaging(0.931) TCGA-FR-A726-01 17 10440638 10440638 G A MYH2 Silent p.P603P 0.33 TCGA-FR-A726-01 17 10448716 10448716 G A MYH2 Missense_Mutation p.A151V 0.27 tolerated(0.14) benign(0.201) TCGA-FR-A726-01 17 10451088 10451088 C T MYH2 Silent p.G50G 0.41 TCGA-FR-A726-01 17 10451089 10451089 C T MYH2 Missense_Mutation p.G50E 0.39 deleterious(0) possibly_damaging(0.764) TCGA-FR-A726-01 17 11520792 11520792 G A DNAH9 Silent p.L323L 0.31 TCGA-FR-A726-01 17 11522984 11522984 G A DNAH9 Silent p.R412R 0.30 TCGA-FR-A726-01 17 11536022 11536022 T C DNAH9 Splice_Site p.X545_splice 0.37 TCGA-FR-A726-01 17 11554468 11554468 C T DNAH9 Missense_Mutation p.S727F 0.29 benign(0.078) TCGA-FR-A726-01 17 11584043 11584043 C T DNAH9 Silent p.L1194L 0.31 TCGA-FR-A726-01 17 11608482 11608482 G A DNAH9 Silent p.V1844V 0.41 TCGA-FR-A726-01 17 11622701 11622701 C T DNAH9 Missense_Mutation p.P1868L 0.29 probably_damaging(0.992) TCGA-FR-A726-01 17 11622730 11622730 G A DNAH9 Missense_Mutation p.E1878K 0.31 probably_damaging(0.999) TCGA-FR-A726-01 17 11622741 11622741 G A DNAH9 Silent p.K1881K 0.28 TCGA-FR-A726-01 17 11651035 11651035 G A DNAH9 Missense_Mutation p.D2188N 0.28 benign(0.074) TCGA-FR-A726-01 17 11666774 11666774 C T DNAH9 Missense_Mutation p.P2338L 0.29 probably_damaging(0.946) TCGA-FR-A726-01 17 11687685 11687685 C T DNAH9 Silent p.I2630I 0.30 TCGA-FR-A726-01 17 11711062 11711062 C T DNAH9 Missense_Mutation p.R2812C 0.37 probably_damaging(1) TCGA-FR-A726-01 17 11711084 11711084 G A DNAH9 Missense_Mutation p.G2819E 0.31 probably_damaging(0.999) TCGA-FR-A726-01 17 11725780 11725780 G A DNAH9 Missense_Mutation p.G2959E 0.35 probably_damaging(0.997) TCGA-FR-A726-01 17 11726188 11726188 C T DNAH9 Missense_Mutation p.S3028F 0.31 benign(0.285) TCGA-FR-A726-01 17 11786953 11786953 G A DNAH9 Silent p.L3619L 0.35 TCGA-FR-A726-01 17 11827196 11827196 G A DNAH9 Missense_Mutation p.E3939K 0.24 probably_damaging(0.998) TCGA-FR-A726-01 17 11833360 11833360 C T DNAH9 Missense_Mutation p.P4019S 0.18 probably_damaging(0.996) TCGA-FR-A726-01 17 11837356 11837356 C T DNAH9 Missense_Mutation p.P4153S 0.34 probably_damaging(0.999) TCGA-FR-A726-01 17 11985286 11985286 T C MAP2K4 Intron 0.36 TCGA-FR-A726-01 17 1248731 1248731 G A YWHAE 3'UTR 0.26 TCGA-FR-A726-01 17 1248732 1248732 G A YWHAE 3'UTR 0.25 TCGA-FR-A726-01 17 12626254 12626254 G A MYOCD Missense_Mutation p.R115Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 17 12655851 12655851 G A MYOCD Missense_Mutation p.G416R 0.37 deleterious(0.03) probably_damaging(0.913) TCGA-FR-A726-01 17 12655854 12655854 G A MYOCD Missense_Mutation p.D417N 0.30 deleterious(0.01) probably_damaging(0.952) TCGA-FR-A726-01 17 12656149 12656149 C T MYOCD Missense_Mutation p.S515F 0.31 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 17 12656563 12656563 C T MYOCD Missense_Mutation p.P653L 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-FR-A726-01 17 12905662 12905662 G A ELAC2 Silent p.T411T 0.13 TCGA-FR-A726-01 17 1387520 1387520 G A MYO1C Silent p.F51F 0.27 TCGA-FR-A726-01 17 14095472 14095472 G A COX10 Missense_Mutation p.G288R 0.17 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 17 14248828 14248828 C T HS3ST3B1 Silent p.P346P 0.25 TCGA-FR-A726-01 17 14683192 14683192 C T AC005863.1 RNA 0.24 TCGA-FR-A726-01 17 15207273 15207273 G A TEKT3 Missense_Mutation p.R485W 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A726-01 17 15211980 15211980 C T TEKT3 Splice_Site p.X419_splice 0.28 TCGA-FR-A726-01 17 15234443 15234443 C T TEKT3 Missense_Mutation p.G154R 0.26 tolerated(0.18) benign(0.02) TCGA-FR-A726-01 17 1538607 1538607 G A SCARF1 Silent p.S646S 0.36 TCGA-FR-A726-01 17 15492332 15492332 G A CDRT1 Missense_Mutation p.P739L 0.23 deleterious_low_confidence(0) benign(0) TCGA-FR-A726-01 17 1554094 1554094 G A PRPF8 3'UTR 0.30 TCGA-FR-A726-01 17 15643492 15643492 G A TBC1D26 Intron 0.36 TCGA-FR-A726-01 17 1565047 1565047 G A PRPF8 Missense_Mutation p.R1354C 0.42 deleterious(0) probably_damaging(0.97) TCGA-FR-A726-01 17 1579245 1579245 G A PRPF8 Missense_Mutation p.L886F 0.24 deleterious(0.01) benign(0.167) TCGA-FR-A726-01 17 1579847 1579847 G A PRPF8 Silent p.T780T 0.30 TCGA-FR-A726-01 17 16326061 16326061 C T TRPV2 Silent p.Y161Y 0.25 TCGA-FR-A726-01 17 16470880 16470880 G A ZNF287 Missense_Mutation p.P56S 0.29 tolerated(0.73) benign(0.005) TCGA-FR-A726-01 17 16691305 16691305 G A CCDC144A 3'UTR 0.10 TCGA-FR-A726-01 17 16699541 16699541 C T CCDC144A 3'UTR 0.21 TCGA-FR-A726-01 17 16705776 16705776 G A CCDC144A 3'UTR 0.47 TCGA-FR-A726-01 17 16705855 16705855 C T CCDC144A 3'UTR 0.33 TCGA-FR-A726-01 17 16735099 16735099 C T KRT16P2 Splice_Site 0.46 TCGA-FR-A726-01 17 1675243 1675243 C T SERPINF1 Missense_Mutation p.P173S 0.40 tolerated(0.48) benign(0.004) TCGA-FR-A726-01 17 16843023 16843023 G A TNFRSF13B Silent p.P240P 0.09 TCGA-FR-A726-01 17 1684625 1684625 G A SMYD4 Silent p.S790S 0.45 TCGA-FR-A726-01 17 1703925 1703925 G A SMYD4 Missense_Mutation p.P255S 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A726-01 17 17696859 17696859 C T RAI1 Silent p.S199S 0.26 TCGA-FR-A726-01 17 17697984 17697984 C T RAI1 Silent p.S574S 0.27 TCGA-FR-A726-01 17 17697985 17697985 C T RAI1 Silent p.L575L 0.27 TCGA-FR-A726-01 17 17698335 17698335 C T RAI1 Silent p.S691S 0.24 TCGA-FR-A726-01 17 17715917 17715917 G A SREBF1 3'UTR 0.30 TCGA-FR-A726-01 17 17880980 17880980 G A LRRC48 Missense_Mutation p.G23E 0.30 tolerated(1) benign(0.001) TCGA-FR-A726-01 17 18023087 18023087 C T MYO15A Missense_Mutation p.P325S 0.36 possibly_damaging(0.641) TCGA-FR-A726-01 17 18023423 18023423 G A MYO15A Missense_Mutation p.E437K 0.28 benign(0.292) TCGA-FR-A726-01 17 18058713 18058713 C T MYO15A Missense_Mutation p.A2809V 0.38 unknown(0) TCGA-FR-A726-01 17 18066623 18066623 C T MYO15A Silent p.I3226I 0.29 TCGA-FR-A726-01 17 18075061 18075061 C T MYO15A Missense_Mutation p.H3398Y 0.31 unknown(0) TCGA-FR-A726-01 17 18208457 18208457 G A TOP3A Silent p.I156I 0.40 TCGA-FR-A726-01 17 18281244 18281244 C T EVPLL 5'UTR 0.32 TCGA-FR-A726-01 17 18702241 18702241 C T TVP23B Silent p.F149F 0.32 TCGA-FR-A726-01 17 18881851 18881851 C T FAM83G Silent p.L376L 0.30 TCGA-FR-A726-01 17 18906832 18906832 C T FAM83G Splice_Site p.X174_splice 0.32 TCGA-FR-A726-01 17 18907227 18907227 C T FAM83G Missense_Mutation p.R43Q 0.31 tolerated(0.19) possibly_damaging(0.647) TCGA-FR-A726-01 17 19287849 19287849 C T MFAP4 Missense_Mutation p.G256S 0.29 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 17 19314712 19314712 C T RNF112 5'UTR 0.17 TCGA-FR-A726-01 17 19458617 19458617 G A SLC47A1 Silent p.G212G 0.33 TCGA-FR-A726-01 17 19458618 19458618 G A SLC47A1 Missense_Mutation p.V213M 0.33 tolerated(0.06) possibly_damaging(0.895) TCGA-FR-A726-01 17 19607383 19607383 C T SLC47A2 Missense_Mutation p.V376I 0.38 tolerated(0.43) benign(0.009) TCGA-FR-A726-01 17 19839734 19839734 G A AKAP10 Silent p.S444S 0.38 TCGA-FR-A726-01 17 19999992 19999992 C T SPECC1 Missense_Mutation p.P10S 0.36 tolerated(0.16) benign(0.103) TCGA-FR-A726-01 17 21075427 21075427 G A DHRS7B Silent p.R39R 0.26 TCGA-FR-A726-01 17 21101932 21101932 G A TMEM11 Missense_Mutation p.T95I 0.26 tolerated(0.08) benign(0.165) TCGA-FR-A726-01 17 21826310 21826310 C T FAM27L RNA 0.16 TCGA-FR-A726-01 17 2381069 2381069 G A METTL16 Missense_Mutation p.P80L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 25748050 25748050 C T TBC1D3P5 RNA 0.40 TCGA-FR-A726-01 17 25909818 25909818 C T KSR1 Nonsense_Mutation p.Q86* 0.31 TCGA-FR-A726-01 17 2601461 2601461 G A CLUH Missense_Mutation p.R526W 0.53 deleterious(0) probably_damaging(0.97) TCGA-FR-A726-01 17 26096142 26096142 G A NOS2 Missense_Mutation p.P632L 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 26101339 26101339 G A NOS2 Missense_Mutation p.P474S 0.35 deleterious(0.03) possibly_damaging(0.888) TCGA-FR-A726-01 17 26521605 26521605 C G NLK Intron 0.38 TCGA-FR-A726-01 17 26604146 26604146 C T AC061975.8 5'Flank 0.30 TCGA-FR-A726-01 17 26691530 26691530 T C VTN 3'Flank 0.20 TCGA-FR-A726-01 17 26817891 26817891 G A SLC13A2 Missense_Mutation p.E230K 0.38 tolerated(0.1) possibly_damaging(0.756) TCGA-FR-A726-01 17 26818772 26818772 G A SLC13A2 Silent p.V309V 0.32 TCGA-FR-A726-01 17 26821460 26821460 T G SLC13A2 Missense_Mutation p.V462G 0.36 deleterious(0) possibly_damaging(0.848) TCGA-FR-A726-01 17 26823585 26823585 G A SLC13A2 Missense_Mutation p.D579N 0.29 tolerated(0.28) benign(0.001) TCGA-FR-A726-01 17 26913151 26913151 G A SPAG5 Missense_Mutation p.S521F 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A726-01 17 26919636 26919636 G A SPAG5 Missense_Mutation p.P209L 0.26 tolerated_low_confidence(0.29) benign(0.005) TCGA-FR-A726-01 17 26961604 26961604 G A KIAA0100 Missense_Mutation p.P1001S 0.33 deleterious(0) possibly_damaging(0.512) TCGA-FR-A726-01 17 27028589 27028589 C T SUPT6H Silent p.T1709T 0.27 TCGA-FR-A726-01 17 27028590 27028590 C T SUPT6H Missense_Mutation p.P1710S 0.28 tolerated(0.07) probably_damaging(0.968) TCGA-FR-A726-01 17 27076587 27076587 C T TRAF4 Missense_Mutation p.L469F 0.32 deleterious(0.01) possibly_damaging(0.459) TCGA-FR-A726-01 17 27283271 27283271 C T SEZ6 Missense_Mutation p.G953E 0.39 tolerated(0.37) probably_damaging(0.96) TCGA-FR-A726-01 17 27287908 27287908 T G SEZ6 Missense_Mutation p.T442P 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-FR-A726-01 17 27794234 27794234 G A TAOK1 Silent p.E68E 0.29 TCGA-FR-A726-01 17 27909082 27909082 G A GIT1 Silent p.F162F 0.39 TCGA-FR-A726-01 17 28419874 28419874 T C EFCAB5 Missense_Mutation p.L1414S 0.34 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 17 28435057 28435057 G A EFCAB5 3'UTR 0.43 TCGA-FR-A726-01 17 28758895 28758895 C T CPD Missense_Mutation p.S708F 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A726-01 17 28960141 28960141 C T LRRC37BP1 RNA 0.28 TCGA-FR-A726-01 17 28964386 28964386 T A LRRC37BP1 RNA 0.30 TCGA-FR-A726-01 17 28964387 28964387 T A LRRC37BP1 RNA 0.32 TCGA-FR-A726-01 17 2898730 2898730 G A RAP1GAP2 Silent p.K338K 0.30 TCGA-FR-A726-01 17 29161167 29161167 C T ATAD5 Missense_Mutation p.P23L 0.34 deleterious(0) possibly_damaging(0.536) TCGA-FR-A726-01 17 29553501 29553501 C T NF1 Nonsense_Mutation p.Q684* 0.28 TCGA-FR-A726-01 17 29654691 29654691 C T NF1 Nonsense_Mutation p.Q1815* 0.24 TCGA-FR-A726-01 17 2966467 2966467 G A OR1D5 Silent p.L145L 0.26 TCGA-FR-A726-01 17 2966574 2966574 G A OR1D5 Silent p.L110L 0.26 TCGA-FR-A726-01 17 2966780 2966780 C T OR1D5 Missense_Mutation p.G41E 0.51 deleterious(0.01) benign(0.434) TCGA-FR-A726-01 17 2995501 2995501 G A OR1D2 Missense_Mutation p.H264Y 0.30 deleterious(0.01) possibly_damaging(0.511) TCGA-FR-A726-01 17 30348869 30348869 G A LRRC37B Missense_Mutation p.G235D 0.35 tolerated(0.79) possibly_damaging(0.568) TCGA-FR-A726-01 17 30815029 30815029 C T CDK5R1 Missense_Mutation p.P131S 0.26 tolerated(0.28) benign(0.002) TCGA-FR-A726-01 17 3119201 3119201 G A OR1A1 Missense_Mutation p.G96E 0.35 tolerated(0.2) benign(0.048) TCGA-FR-A726-01 17 31260195 31260195 C T TMEM98 Silent p.P45P 0.30 TCGA-FR-A726-01 17 31324857 31324857 G A SPACA3 3'UTR 0.31 TCGA-FR-A726-01 17 31352999 31352999 C T ASIC2 Silent p.G380G 0.21 TCGA-FR-A726-01 17 31416006 31416006 C T ASIC2 Missense_Mutation p.E288K 0.29 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 17 3181925 3181925 G A OR3A2 Missense_Mutation p.S102F 0.23 deleterious(0.02) benign(0.152) TCGA-FR-A726-01 17 3194958 3194958 T A OR3A1 Missense_Mutation p.M307L 0.26 tolerated(0.19) benign(0) TCGA-FR-A726-01 17 32953963 32953963 G A TMEM132E Missense_Mutation p.M205I 0.26 tolerated(0.12) benign(0.002) TCGA-FR-A726-01 17 32955723 32955723 C T TMEM132E Silent p.P290P 0.20 TCGA-FR-A726-01 17 3300765 3300765 G A OR1E1 Missense_Mutation p.L314F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-FR-A726-01 17 3324477 3324477 C T OR3A3 Silent p.L206L 0.36 TCGA-FR-A726-01 17 33289377 33289377 T C ZNF830 Silent p.D264D 0.20 TCGA-FR-A726-01 17 33325292 33325292 G A LIG3 Missense_Mutation p.G656R 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 3343375 3343375 G A SPATA22 3'UTR 0.38 TCGA-FR-A726-01 17 33479996 33479996 G A UNC45B Missense_Mutation p.E156K 0.33 tolerated(0.28) benign(0.075) TCGA-FR-A726-01 17 33495305 33495305 C T UNC45B Silent p.I459I 0.29 TCGA-FR-A726-01 17 33586497 33586497 C T SLFN5 Missense_Mutation p.P263L 0.31 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 17 33679757 33679757 C T SLFN11 Missense_Mutation p.G775E 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 33689777 33689777 C T SLFN11 Missense_Mutation p.M350I 0.38 tolerated(0.11) benign(0.206) TCGA-FR-A726-01 17 33738277 33738277 C T SLFN12 3'UTR 0.37 TCGA-FR-A726-01 17 33749390 33749390 C T SLFN12 Missense_Mutation p.E220K 0.32 tolerated(0.06) possibly_damaging(0.887) TCGA-FR-A726-01 17 33750011 33750011 C T SLFN12 Missense_Mutation p.E13K 0.26 deleterious(0) possibly_damaging(0.797) TCGA-FR-A726-01 17 3384964 3384964 C T ASPA Missense_Mutation p.P102S 0.32 deleterious(0) possibly_damaging(0.772) TCGA-FR-A726-01 17 34062121 34062121 C T RASL10B 5'UTR 0.33 TCGA-FR-A726-01 17 34071865 34071865 C T GAS2L2 3'UTR 0.38 TCGA-FR-A726-01 17 34074037 34074037 C T GAS2L2 Silent p.L361L 0.41 TCGA-FR-A726-01 17 34871706 34871706 G A MYO19 Missense_Mutation p.A181V 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 35736128 35736128 A G C17orf78 Missense_Mutation p.T67A 0.30 tolerated(0.11) benign(0.05) TCGA-FR-A726-01 17 35837177 35837177 C T TADA2A 3'UTR 0.36 TCGA-FR-A726-01 17 36047338 36047338 C T HNF1B 3'UTR 0.24 TCGA-FR-A726-01 17 36485665 36485665 C T GPR179 Missense_Mutation p.E1263K 0.29 tolerated(0.22) benign(0.011) TCGA-FR-A726-01 17 36487203 36487203 G A GPR179 Missense_Mutation p.S750F 0.33 tolerated(0.2) possibly_damaging(0.901) TCGA-FR-A726-01 17 36717781 36717781 G A SRCIN1 Missense_Mutation p.P540S 0.14 deleterious(0.04) possibly_damaging(0.487) TCGA-FR-A726-01 17 36873073 36873073 C T MLLT6 Missense_Mutation p.S497F 0.22 tolerated(0.46) unknown(0) TCGA-FR-A726-01 17 37186609 37186609 C T CTD-2206N4.2 5'Flank 0.55 TCGA-FR-A726-01 17 37187615 37187615 G A CTD-2206N4.2 5'Flank 0.33 TCGA-FR-A726-01 17 37187770 37187770 T C CTD-2206N4.2 5'Flank 0.31 TCGA-FR-A726-01 17 37331338 37331338 G A CACNB1 3'UTR 0.19 TCGA-FR-A726-01 17 37607442 37607442 G A MED1 5'UTR 0.36 TCGA-FR-A726-01 17 37627264 37627264 C T CDK12 Silent p.S393S 0.36 TCGA-FR-A726-01 17 3779539 3779539 G A CAMKK1 Missense_Mutation p.S363F 0.14 deleterious(0.03) benign(0.419) TCGA-FR-A726-01 17 37863388 37863388 C T ERBB2 Silent p.F73F 0.38 TCGA-FR-A726-01 17 37901571 37901571 C T GRB7 Missense_Mutation p.P386S 0.34 deleterious(0.04) possibly_damaging(0.814) TCGA-FR-A726-01 17 37949006 37949006 C T IKZF3 Missense_Mutation p.S115N 0.32 tolerated(1) benign(0.003) TCGA-FR-A726-01 17 38031517 38031517 G A ZPBP2 Missense_Mutation p.R240Q 0.36 tolerated(0.2) benign(0.371) TCGA-FR-A726-01 17 38079460 38079460 C G ORMDL3 Missense_Mutation p.Q77H 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 17 3808188 3808188 G A P2RX1 Silent p.I107I 0.38 TCGA-FR-A726-01 17 38131251 38131251 C T GSDMA Silent p.F335F 0.44 TCGA-FR-A726-01 17 3844564 3844564 C T ATP2A3 Missense_Mutation p.D601N 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 3845984 3845984 G A ATP2A3 Silent p.F487F 0.36 TCGA-FR-A726-01 17 38645088 38645088 G A TNS4 Silent p.P191P 0.10 TCGA-FR-A726-01 17 38652319 38652319 G A TNS4 Missense_Mutation p.P120L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 38911426 38911426 C T KRT25 Missense_Mutation p.G33E 0.31 deleterious(0.02) benign(0.07) TCGA-FR-A726-01 17 38948608 38948608 C T KRT28 3'UTR 0.38 TCGA-FR-A726-01 17 38953174 38953174 C T KRT28 Missense_Mutation p.M324I 0.12 deleterious(0.01) benign(0.009) TCGA-FR-A726-01 17 38953243 38953243 G A KRT28 Silent p.F301F 0.40 TCGA-FR-A726-01 17 38955994 38955994 C T KRT28 Missense_Mutation p.G51E 0.38 deleterious(0) possibly_damaging(0.781) TCGA-FR-A726-01 17 38976830 38976830 G A KRT10 Missense_Mutation p.A267V 0.30 deleterious(0) possibly_damaging(0.783) TCGA-FR-A726-01 17 38978267 38978267 C T KRT10 Missense_Mutation p.G191R 0.30 tolerated(0.28) benign(0.055) TCGA-FR-A726-01 17 39021101 39021101 C T KRT12 Missense_Mutation p.S255N 0.35 tolerated(0.32) benign(0.039) TCGA-FR-A726-01 17 39021127 39021127 C T KRT12 Silent p.R246R 0.30 TCGA-FR-A726-01 17 39081785 39081785 C T KRT23 Silent p.R321R 0.29 TCGA-FR-A726-01 17 39081786 39081786 C T KRT23 Missense_Mutation p.R321Q 0.29 deleterious(0.02) benign(0.297) TCGA-FR-A726-01 17 39092671 39092671 C T KRT23 Missense_Mutation p.G62E 0.34 tolerated(0.14) benign(0.004) TCGA-FR-A726-01 17 39114771 39114771 G A KRT39 3'UTR 0.24 TCGA-FR-A726-01 17 39140345 39140345 G A KRT40 Missense_Mutation p.P61S 0.41 tolerated(0.07) possibly_damaging(0.449) TCGA-FR-A726-01 17 39149953 39149953 C T KRTAP3-3 3'UTR 0.33 TCGA-FR-A726-01 17 39150152 39150152 G A KRTAP3-3 Silent p.F66F 0.22 TCGA-FR-A726-01 17 39156044 39156044 G A KRTAP3-2 Missense_Mutation p.S21F 0.20 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-FR-A726-01 17 39183142 39183142 C T KRTAP1-5 Missense_Mutation p.S89N 0.32 deleterious(0.01) unknown(0) TCGA-FR-A726-01 17 39262090 39262090 C T KRTAP4-9 Silent p.C150C 0.15 TCGA-FR-A726-01 17 39406167 39406167 C T KRTAP9-4 Silent p.T65T 0.38 TCGA-FR-A726-01 17 39412159 39412159 G A KRTAP9-9 3'UTR 0.29 TCGA-FR-A726-01 17 39471804 39471804 G A KRTAP17-1 Silent p.G33G 0.40 TCGA-FR-A726-01 17 39504831 39504831 C T KRT33A Silent p.R164R 0.33 TCGA-FR-A726-01 17 39521192 39521192 G A KRT33B Silent p.S312S 0.29 TCGA-FR-A726-01 17 39525891 39525891 G A KRT33B Missense_Mutation p.P38S 0.31 tolerated(0.22) benign(0.02) TCGA-FR-A726-01 17 39535324 39535324 C T KRT34 Silent p.E369E 0.38 TCGA-FR-A726-01 17 39535893 39535893 C T KRT34 Missense_Mutation p.E269K 0.22 tolerated(0.05) benign(0.168) TCGA-FR-A726-01 17 39550189 39550189 C T KRT31 3'UTR 0.21 TCGA-FR-A726-01 17 39551510 39551510 G A KRT31 Missense_Mutation p.A288V 0.25 deleterious(0.01) possibly_damaging(0.803) TCGA-FR-A726-01 17 39551553 39551553 C T KRT31 Missense_Mutation p.E274K 0.30 deleterious(0.01) benign(0.2) TCGA-FR-A726-01 17 39553723 39553723 G A KRT31 Silent p.P23P 0.36 TCGA-FR-A726-01 17 39593660 39593660 G A KRT38 3'UTR 0.31 TCGA-FR-A726-01 17 39595534 39595534 G A KRT38 Missense_Mutation p.T218I 0.34 deleterious(0.01) possibly_damaging(0.902) TCGA-FR-A726-01 17 39622094 39622094 C T KRT32 Silent p.K213K 0.27 TCGA-FR-A726-01 17 39637282 39637282 C G KRT35 Missense_Mutation p.G23A 0.22 tolerated(0.16) benign(0.089) TCGA-FR-A726-01 17 39642819 39642819 G A KRT36 Missense_Mutation p.P405S 0.36 tolerated(0.11) probably_damaging(0.996) TCGA-FR-A726-01 17 39643315 39643315 G A KRT36 Silent p.I365I 0.33 TCGA-FR-A726-01 17 39643989 39643989 C T KRT36 Missense_Mutation p.E234K 0.38 deleterious(0) possibly_damaging(0.689) TCGA-FR-A726-01 17 39644927 39644927 T A KRT36 Missense_Mutation p.N170I 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 3974120 3974120 G A ZZEF1 Silent p.F1311F 0.25 TCGA-FR-A726-01 17 39780714 39780714 G A KRT17 Silent p.G16G 0.34 TCGA-FR-A726-01 17 3994118 3994118 A G ZZEF1 Silent p.G640G 0.27 TCGA-FR-A726-01 17 40095007 40095007 C T TTC25 RNA 0.31 TCGA-FR-A726-01 17 40315637 40315637 C T KCNH4 Missense_Mutation p.D822N 0.27 tolerated(0.19) probably_damaging(0.998) TCGA-FR-A726-01 17 40321537 40321537 G A KCNH4 Silent p.F516F 0.09 TCGA-FR-A726-01 17 40557335 40557335 C T PTRF Silent p.K181K 0.29 TCGA-FR-A726-01 17 40765704 40765704 G A TUBG1 Missense_Mutation p.D216N 0.35 deleterious(0.04) benign(0.427) TCGA-FR-A726-01 17 40767108 40767108 C T TUBG1 3'UTR 0.25 TCGA-FR-A726-01 17 40915007 40915007 G A RAMP2 3'UTR 0.43 TCGA-FR-A726-01 17 40936445 40936445 C T WNK4 Missense_Mutation p.P340S 0.39 deleterious(0) unknown(0) TCGA-FR-A726-01 17 40936446 40936446 C T WNK4 Missense_Mutation p.P340L 0.38 deleterious(0) unknown(0) TCGA-FR-A726-01 17 40947213 40947213 C T WNK4 Missense_Mutation p.S925F 0.36 deleterious(0) unknown(0) TCGA-FR-A726-01 17 40997342 40997342 C T AOC2 Silent p.F233F 0.39 TCGA-FR-A726-01 17 41570382 41570382 T A DHX8 Silent p.G279G 0.25 TCGA-FR-A726-01 17 41577430 41577430 C T DHX8 Missense_Mutation p.P502L 0.43 deleterious(0.01) possibly_damaging(0.613) TCGA-FR-A726-01 17 42327840 42327840 C T SLC4A1 Missense_Mutation p.A908T 0.28 tolerated(0.63) benign(0) TCGA-FR-A726-01 17 42335986 42335986 G A SLC4A1 Silent p.F294F 0.37 TCGA-FR-A726-01 17 42476346 42476346 G A GPATCH8 Silent p.S1033S 0.34 TCGA-FR-A726-01 17 42477801 42477801 G A GPATCH8 Silent p.A548A 0.44 TCGA-FR-A726-01 17 43101900 43101900 G A DCAKD Silent p.S199S 0.32 TCGA-FR-A726-01 17 43331878 43331878 G A SPATA32 Missense_Mutation p.S357L 0.35 deleterious(0.04) possibly_damaging(0.895) TCGA-FR-A726-01 17 43347835 43347835 G A MAP3K14-AS1 3'Flank 0.17 TCGA-FR-A726-01 17 43531424 43531424 G A PLEKHM1 Silent p.F598F 0.07 TCGA-FR-A726-01 17 43545804 43545804 G A PLEKHM1 Missense_Mutation p.P360L 0.35 deleterious(0.01) benign(0.006) TCGA-FR-A726-01 17 43552601 43552601 G A PLEKHM1 Missense_Mutation p.S263F 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A726-01 17 43923796 43923796 C T SPPL2C Silent p.T508T 0.21 TCGA-FR-A726-01 17 44096032 44096032 G A MAPT Missense_Mutation p.R684K 0.32 tolerated(1) benign(0.007) TCGA-FR-A726-01 17 4461803 4461803 G A GGT6 Missense_Mutation p.S330F 0.39 deleterious(0.01) possibly_damaging(0.876) TCGA-FR-A726-01 17 4463097 4463097 G A GGT6 Intron 0.24 TCGA-FR-A726-01 17 44845914 44845914 G A WNT3 Silent p.S280S 0.29 TCGA-FR-A726-01 17 44851211 44851211 G A WNT3 Missense_Mutation p.P49S 0.23 tolerated(0.16) possibly_damaging(0.904) TCGA-FR-A726-01 17 44851212 44851212 G T WNT3 Silent p.I48I 0.23 TCGA-FR-A726-01 17 45009490 45009490 C T GOSR2 Silent p.F87F 0.37 TCGA-FR-A726-01 17 45099261 45099261 G A RP11-156P1.3 Intron 0.33 TCGA-FR-A726-01 17 45387659 45387659 G A ITGB3 3'UTR 0.56 TCGA-FR-A726-01 17 4576586 4576586 G A PELP1 Silent p.L602L 0.40 TCGA-FR-A726-01 17 45820437 45820437 G A TBX21 Missense_Mutation p.G216E 0.06 deleterious(0.01) benign(0.173) TCGA-FR-A726-01 17 45822673 45822673 G A TBX21 Missense_Mutation p.A517T 0.32 tolerated(0.16) probably_damaging(0.989) TCGA-FR-A726-01 17 45822683 45822683 C T TBX21 Missense_Mutation p.P520L 0.27 tolerated(0.5) probably_damaging(0.997) TCGA-FR-A726-01 17 45915587 45915587 G A SCRN2 Intron 0.33 TCGA-FR-A726-01 17 45915588 45915588 G A SCRN2 Intron 0.33 TCGA-FR-A726-01 17 46103790 46103790 G A COPZ2 3'UTR 0.23 TCGA-FR-A726-01 17 46214690 46214690 T A SKAP1 Missense_Mutation p.M330L 0.33 tolerated(0.57) benign(0.014) TCGA-FR-A726-01 17 46607895 46607895 G A HOXB1 Silent p.S124S 0.06 TCGA-FR-A726-01 17 46691829 46691829 C T HOXB8 Missense_Mutation p.G80R 0.27 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 17 46805887 46805887 C T HOXB13 Silent p.G23G 0.32 TCGA-FR-A726-01 17 46993504 46993504 C T UBE2Z Silent p.S215S 0.30 TCGA-FR-A726-01 17 4722448 4722448 C T PLD2 Missense_Mutation p.P748L 0.26 tolerated(1) benign(0.009) TCGA-FR-A726-01 17 47237991 47237991 G A B4GALNT2 Missense_Mutation p.D312N 0.38 tolerated(0.18) probably_damaging(0.992) TCGA-FR-A726-01 17 47241517 47241517 C T B4GALNT2 Silent p.I338I 0.42 TCGA-FR-A726-01 17 47247137 47247137 C T B4GALNT2 3'UTR 0.32 TCGA-FR-A726-01 17 47284190 47284190 C T GNGT2 Missense_Mutation p.D47N 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 47300033 47300033 G A ABI3 Missense_Mutation p.G353R 0.26 tolerated(0.07) probably_damaging(0.988) TCGA-FR-A726-01 17 47587951 47587955 ACAAC - NGFR Frame_Shift_Del p.D249Afs*66 0.24 TCGA-FR-A726-01 17 47797136 47797136 C T FAM117A Missense_Mutation p.E232K 0.35 tolerated(0.18) possibly_damaging(0.671) TCGA-FR-A726-01 17 4795467 4795467 C T MINK1 Silent p.I675I 0.33 TCGA-FR-A726-01 17 48068847 48068847 G A DLX3 3'UTR 0.29 TCGA-FR-A726-01 17 48212945 48212945 C T PPP1R9B Silent p.K789K 0.21 TCGA-FR-A726-01 17 48272658 48272658 G A COL1A1 Missense_Mutation p.P412S 0.30 unknown(0) TCGA-FR-A726-01 17 48356759 48356759 C T TMEM92 3'UTR 0.11 TCGA-FR-A726-01 17 4845926 4845926 T C RNF167 Missense_Mutation p.S116P 0.30 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 17 48561831 48561831 C T RSAD1 Missense_Mutation p.T379I 0.09 deleterious(0.02) benign(0.319) TCGA-FR-A726-01 17 48649318 48649318 C T CACNA1G Silent p.F222F 0.42 TCGA-FR-A726-01 17 48697041 48697041 C T CACNA1G Intron 0.41 TCGA-FR-A726-01 17 48746211 48746211 C T ABCC3 Intron 0.28 TCGA-FR-A726-01 17 48753920 48753920 C T ABCC3 Missense_Mutation p.P1117S 0.30 deleterious(0) probably_damaging(0.933) TCGA-FR-A726-01 17 48757227 48757227 G A ABCC3 Silent p.E1258E 0.28 TCGA-FR-A726-01 17 50212269 50212269 C T CA10 Intron 0.25 TCGA-FR-A726-01 17 5036244 5036244 G A USP6 Missense_Mutation p.E79K 0.26 tolerated_low_confidence(0.41) benign(0.292) TCGA-FR-A726-01 17 5050425 5050425 T A USP6 Missense_Mutation p.F789L 0.31 tolerated_low_confidence(0.68) benign(0.128) TCGA-FR-A726-01 17 5073878 5073878 C T USP6 Missense_Mutation p.R1208W 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A726-01 17 5086261 5086261 G A ZNF594 Missense_Mutation p.P431S 0.26 deleterious(0.03) probably_damaging(0.98) TCGA-FR-A726-01 17 51901242 51901242 C T KIF2B Missense_Mutation p.T283I 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 51901310 51901310 G A KIF2B Missense_Mutation p.G306R 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 51902082 51902082 G A KIF2B Missense_Mutation p.R563K 0.24 tolerated(0.57) benign(0.001) TCGA-FR-A726-01 17 51902102 51902102 G A KIF2B Missense_Mutation p.G570R 0.34 tolerated(0.58) benign(0) TCGA-FR-A726-01 17 5289473 5289473 G A NUP88 3'UTR 0.31 TCGA-FR-A726-01 17 5323093 5323093 C T RPAIN 5'Flank 0.54 TCGA-FR-A726-01 17 53345395 53345395 C T HLF Silent p.P133P 0.31 TCGA-FR-A726-01 17 5364278 5364278 G A DHX33 Missense_Mutation p.S277F 0.30 deleterious(0) benign(0.203) TCGA-FR-A726-01 17 53798276 53798276 G A TMEM100 Silent p.S52S 0.21 TCGA-FR-A726-01 17 54428170 54428170 C T ANKFN1 Missense_Mutation p.L81F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-FR-A726-01 17 54428302 54428302 C T ANKFN1 Missense_Mutation p.R125W 0.18 deleterious(0) possibly_damaging(0.897) TCGA-FR-A726-01 17 54450050 54450050 C T ANKFN1 Silent p.V218V 0.22 TCGA-FR-A726-01 17 54554932 54554932 G A ANKFN1 Silent p.V622V 0.22 TCGA-FR-A726-01 17 5487140 5487140 C T NLRP1 Silent p.E46E 0.45 TCGA-FR-A726-01 17 54969184 54969184 G A TRIM25 Silent p.F590F 0.29 TCGA-FR-A726-01 17 55184421 55184421 C T AKAP1 Silent p.I532I 0.21 TCGA-FR-A726-01 17 56247655 56247655 C T OR4D2 Silent p.L213L 0.29 TCGA-FR-A726-01 17 56247769 56247769 C T OR4D2 Silent p.F251F 0.27 TCGA-FR-A726-01 17 56290392 56290392 G A MKS1 Missense_Mutation p.P270L 0.27 tolerated(0.27) benign(0) TCGA-FR-A726-01 17 56329667 56329667 C T LPO Missense_Mutation p.S302F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 56382463 56382463 C T BZRAP1 Missense_Mutation p.G1835S 0.22 tolerated(0.62) benign(0.012) TCGA-FR-A726-01 17 56386251 56386251 C T BZRAP1 Missense_Mutation p.G1461E 0.14 deleterious(0.01) possibly_damaging(0.461) TCGA-FR-A726-01 17 56389646 56389646 C T BZRAP1 Missense_Mutation p.E846K 0.21 deleterious(0) benign(0.394) TCGA-FR-A726-01 17 56429554 56429554 G A SUPT4H1 5'UTR 0.26 TCGA-FR-A726-01 17 56429609 56429609 C T SUPT4H1 5'Flank 0.25 TCGA-FR-A726-01 17 56557279 56557279 C T HSF5 Silent p.Q300Q 0.07 TCGA-FR-A726-01 17 56557487 56557487 C T HSF5 Nonsense_Mutation p.W231* 0.19 TCGA-FR-A726-01 17 56565591 56565591 G A HSF5 Silent p.P15P 0.18 TCGA-FR-A726-01 17 56565592 56565592 G A HSF5 Missense_Mutation p.P15L 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-FR-A726-01 17 56572993 56572993 G A MTMR4 Missense_Mutation p.P837L 0.23 tolerated_low_confidence(0.22) benign(0.003) TCGA-FR-A726-01 17 56581525 56581525 G A MTMR4 Silent p.N514N 0.21 TCGA-FR-A726-01 17 56585601 56585601 G A MTMR4 Missense_Mutation p.P196S 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 56620548 56620548 T A C17orf47 Missense_Mutation p.R334W 0.21 deleterious(0) probably_damaging(0.938) TCGA-FR-A726-01 17 56638901 56638901 G A TEX14 Silent p.D1425D 0.06 TCGA-FR-A726-01 17 56646568 56646568 G A TEX14 Silent p.L1337L 0.28 TCGA-FR-A726-01 17 57287389 57287389 G A SMG8 5'UTR 0.20 TCGA-FR-A726-01 17 57288739 57288739 C T SMG8 Missense_Mutation p.P443S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 17 57430818 57430818 C T YPEL2 Silent p.S16S 0.15 TCGA-FR-A726-01 17 57808831 57808831 T G VMP1 Missense_Mutation p.C8W 0.22 tolerated(0.07) possibly_damaging(0.893) TCGA-FR-A726-01 17 57917345 57917345 G A VMP1 3'UTR 0.34 TCGA-FR-A726-01 17 58422856 58422856 G A USP32 Missense_Mutation p.P58S 0.27 tolerated(0.57) probably_damaging(0.968) TCGA-FR-A726-01 17 58511325 58511325 C T C17orf64 3'Flank 0.16 TCGA-FR-A726-01 17 59147412 59147412 C T BCAS3 Intron 0.21 TCGA-FR-A726-01 17 59557619 59557619 C T TBX4 Silent p.P320P 0.31 TCGA-FR-A726-01 17 59668242 59668242 C T NACA2 Silent p.K100K 0.26 TCGA-FR-A726-01 17 59668418 59668418 C T NACA2 Missense_Mutation p.D42N 0.27 tolerated(0.11) benign(0.441) TCGA-FR-A726-01 17 5998510 5998510 C T WSCD1 Silent p.T272T 0.27 TCGA-FR-A726-01 17 59996779 59996779 G A INTS2 Missense_Mutation p.P219S 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 60087964 60087964 G A MED13 Silent p.F638F 0.21 TCGA-FR-A726-01 17 6021339 6021339 C T WSCD1 Silent p.S402S 0.31 TCGA-FR-A726-01 17 6021381 6021381 G A WSCD1 Silent p.R416R 0.28 TCGA-FR-A726-01 17 60345601 60345601 C T TBC1D3P2 Splice_Site 0.61 TCGA-FR-A726-01 17 60346377 60346377 G A TBC1D3P2 RNA 0.29 TCGA-FR-A726-01 17 60346386 60346386 G A TBC1D3P2 RNA 0.28 TCGA-FR-A726-01 17 60484516 60484516 G A EFCAB3 Silent p.K322K 0.19 TCGA-FR-A726-01 17 60526206 60526206 G A METTL2A 3'UTR 0.29 TCGA-FR-A726-01 17 60685501 60685501 G A TLK2 Missense_Mutation p.E691K 0.25 deleterious(0) possibly_damaging(0.885) TCGA-FR-A726-01 17 60765873 60765873 G A MRC2 Missense_Mutation p.A1025T 0.22 tolerated(1) benign(0.003) TCGA-FR-A726-01 17 60766924 60766924 C T MRC2 Missense_Mutation p.P1126S 0.32 tolerated(0.39) benign(0.007) TCGA-FR-A726-01 17 60766925 60766925 C T MRC2 Missense_Mutation p.P1126L 0.31 tolerated(0.92) benign(0.001) TCGA-FR-A726-01 17 60768316 60768316 C T MRC2 Missense_Mutation p.T1340I 0.34 tolerated(0.07) benign(0.007) TCGA-FR-A726-01 17 60814024 60814024 G A MARCH10 Missense_Mutation p.S402L 0.23 tolerated(0.08) benign(0.027) TCGA-FR-A726-01 17 61428764 61428764 G A TANC2 Missense_Mutation p.R580K 0.32 deleterious(0) possibly_damaging(0.887) TCGA-FR-A726-01 17 61482532 61482532 C T TANC2 Silent p.L1053L 0.16 TCGA-FR-A726-01 17 61570927 61570927 C T ACE Missense_Mutation p.H1015Y 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 61601504 61601504 G A KCNH6 Silent p.R27R 0.05 TCGA-FR-A726-01 17 61766199 61766199 C T MAP3K3 Missense_Mutation p.R308W 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 61833655 61833655 G A CCDC47 Missense_Mutation p.S298F 0.10 tolerated(0.14) probably_damaging(0.979) TCGA-FR-A726-01 17 61949697 61949697 G A CSH2 Intron 0.23 TCGA-FR-A726-01 17 61950103 61950103 T A CSH2 Splice_Site p.X98_splice 0.14 TCGA-FR-A726-01 17 61950618 61950618 G A CSH2 Missense_Mutation p.P31L 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 61958096 61958096 G A GH2 Silent p.A164A 0.52 TCGA-FR-A726-01 17 62018650 62018650 C T SCN4A Silent p.L1664L 0.22 TCGA-FR-A726-01 17 62018986 62018986 G A SCN4A Silent p.D1552D 0.28 TCGA-FR-A726-01 17 62135252 62135252 G A ERN1 Silent p.P436P 0.15 TCGA-FR-A726-01 17 62135261 62135261 G A ERN1 Silent p.P433P 0.14 TCGA-FR-A726-01 17 62796923 62796923 G A PLEKHM1P RNA 0.25 TCGA-FR-A726-01 17 62892412 62892412 G A LRRC37A3 Nonsense_Mutation p.Q322* 0.14 TCGA-FR-A726-01 17 63533591 63533591 G A AXIN2 Silent p.H521H 0.22 TCGA-FR-A726-01 17 6374623 6374623 G A PITPNM3 Silent p.D494D 0.28 TCGA-FR-A726-01 17 6381376 6381376 G A PITPNM3 Silent p.F273F 0.23 TCGA-FR-A726-01 17 63822378 63822378 C T CEP112 Intron 0.26 TCGA-FR-A726-01 17 6387594 6387594 G A PITPNM3 Missense_Mutation p.S98F 0.31 deleterious(0) possibly_damaging(0.615) TCGA-FR-A726-01 17 64734964 64734964 C T PRKCA Missense_Mutation p.P438L 0.35 deleterious(0) probably_damaging(0.954) TCGA-FR-A726-01 17 64880907 64880907 C T CACNG5 Intron 0.24 TCGA-FR-A726-01 17 64881341 64881341 C T CACNG5 Missense_Mutation p.S271F 0.25 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-FR-A726-01 17 65021082 65021082 C T CACNG4 Silent p.I137I 0.23 TCGA-FR-A726-01 17 65040965 65040965 G A CACNG1 Missense_Mutation p.M63I 0.24 tolerated(0.38) benign(0.003) TCGA-FR-A726-01 17 65052438 65052438 C T CACNG1 3'UTR 0.33 TCGA-FR-A726-01 17 65074542 65074542 C T HELZ Silent p.Q1885Q 0.26 TCGA-FR-A726-01 17 65083004 65083004 G A HELZ Missense_Mutation p.P1812L 0.46 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 17 65105355 65105355 G A HELZ Missense_Mutation p.P1456S 0.22 tolerated_low_confidence(0.37) unknown(0) TCGA-FR-A726-01 17 6554931 6554931 C T MED31 5'UTR 0.22 TCGA-FR-A726-01 17 65717622 65717622 C T NOL11 Silent p.I147I 0.28 TCGA-FR-A726-01 17 65907238 65907238 G A BPTF Missense_Mutation p.E1080K 0.57 probably_damaging(0.956) TCGA-FR-A726-01 17 6604446 6604453 CTACAAGA - SLC13A5 Splice_Site p.X239_splice 0.25 TCGA-FR-A726-01 17 66270204 66270204 G A SLC16A6 Silent p.L80L 0.24 TCGA-FR-A726-01 17 66520180 66520180 C T PRKAR1A Missense_Mutation p.S155L 0.21 tolerated(0.11) benign(0.001) TCGA-FR-A726-01 17 6683288 6683288 G A FBXO39 Missense_Mutation p.R34K 0.29 tolerated(0.44) benign(0.023) TCGA-FR-A726-01 17 6684106 6684106 C T FBXO39 Missense_Mutation p.P307S 0.36 tolerated(0.06) probably_damaging(1) TCGA-FR-A726-01 17 66902293 66902293 C T ABCA8 Missense_Mutation p.D724N 0.17 tolerated(0.08) benign(0.049) TCGA-FR-A726-01 17 66925248 66925248 G A ABCA8 Missense_Mutation p.S356F 0.26 tolerated(0.22) benign(0.03) TCGA-FR-A726-01 17 67022560 67022560 G A ABCA9 Missense_Mutation p.S700F 0.26 deleterious(0) possibly_damaging(0.879) TCGA-FR-A726-01 17 6703397 6703397 C T TEKT1 Silent p.G402G 0.36 TCGA-FR-A726-01 17 67212020 67212020 G A ABCA10 Missense_Mutation p.P265L 0.05 deleterious(0) probably_damaging(0.944) TCGA-FR-A726-01 17 67298917 67298917 G A ABCA5 Missense_Mutation p.S354L 0.29 deleterious(0.04) probably_damaging(0.989) TCGA-FR-A726-01 17 68129421 68129421 G A KCNJ16 Missense_Mutation p.R398K 0.19 tolerated_low_confidence(1) benign(0) TCGA-FR-A726-01 17 6902626 6902626 G A ALOX12 Silent p.E216E 0.34 TCGA-FR-A726-01 17 6920716 6920716 G A C17orf49 3'Flank 0.30 TCGA-FR-A726-01 17 6928492 6928492 C T BCL6B Missense_Mutation p.P288S 0.26 tolerated(0.84) benign(0.001) TCGA-FR-A726-01 17 6930390 6930390 G A BCL6B Missense_Mutation p.G436E 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 17 6978327 6978327 C T CLEC10A 3'UTR 0.31 TCGA-FR-A726-01 17 7100290 7100290 G A DLG4 Missense_Mutation p.S333F 0.23 deleterious(0.01) benign(0.233) TCGA-FR-A726-01 17 7137690 7137690 C T DVL2 5'UTR 0.28 TCGA-FR-A726-01 17 71387663 71387663 T C SDK2 Missense_Mutation p.M1305V 0.11 tolerated(1) benign(0) TCGA-FR-A726-01 17 71397854 71397854 G A SDK2 Silent p.I906I 0.44 TCGA-FR-A726-01 17 7186672 7186672 C T SLC2A4 Missense_Mutation p.P48S 0.43 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 17 7193752 7193752 G A YBX2 Missense_Mutation p.P188S 0.39 tolerated(0.19) possibly_damaging(0.641) TCGA-FR-A726-01 17 72277960 72277960 G A DNAI2 Missense_Mutation p.E2K 0.23 deleterious(0) probably_damaging(0.949) TCGA-FR-A726-01 17 72306248 72306248 G A DNAI2 Silent p.E480E 0.27 TCGA-FR-A726-01 17 72338046 72338046 C T KIF19 Missense_Mutation p.P51L 0.17 tolerated(0.05) benign(0.314) TCGA-FR-A726-01 17 72349369 72349369 G A KIF19 Missense_Mutation p.A717T 0.19 tolerated(0.06) benign(0.185) TCGA-FR-A726-01 17 72352879 72352879 A T BTBD17 Missense_Mutation p.S452T 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 17 72436061 72436061 G A GPRC5C Nonsense_Mutation p.W94* 0.20 TCGA-FR-A726-01 17 72469843 72469843 A C CD300A Missense_Mutation p.K70T 0.21 tolerated(0.33) benign(0.005) TCGA-FR-A726-01 17 72480250 72480250 G A CD300A Silent p.V295V 0.28 TCGA-FR-A726-01 17 72540805 72540805 G A CD300C Missense_Mutation p.P115S 0.23 tolerated(0.39) benign(0.11) TCGA-FR-A726-01 17 7256415 7256415 G A KCTD11 Missense_Mutation p.G52R 0.28 tolerated(0.54) possibly_damaging(0.864) TCGA-FR-A726-01 17 7256749 7256749 C T KCTD11 Missense_Mutation p.P163L 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-FR-A726-01 17 72584797 72584797 G A CD300LD Nonsense_Mutation p.R78* 0.22 TCGA-FR-A726-01 17 72588211 72588211 C T C17orf77 Missense_Mutation p.S9F 0.24 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FR-A726-01 17 72588355 72588355 C T C17orf77 Missense_Mutation p.S57F 0.15 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FR-A726-01 17 72588946 72588946 C T C17orf77 3'UTR 0.19 TCGA-FR-A726-01 17 72667780 72667780 G A CTD-2006K23.2 3'Flank 0.28 TCGA-FR-A726-01 17 72815911 72815911 G A TMEM104 Missense_Mutation p.G220E 0.23 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 17 73096826 73096826 C T SLC16A5 Silent p.I356I 0.21 TCGA-FR-A726-01 17 73489658 73489658 C T KIAA0195 Missense_Mutation p.L725F 0.22 deleterious(0) probably_damaging(0.935) TCGA-FR-A726-01 17 73565333 73565333 C T LLGL2 Missense_Mutation p.P503L 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 17 73623339 73623339 G A RECQL5 3'UTR 0.19 TCGA-FR-A726-01 17 73625528 73625528 A T RECQL5 Missense_Mutation p.F659I 0.18 tolerated(0.32) possibly_damaging(0.733) TCGA-FR-A726-01 17 73625529 73625529 A G RECQL5 Silent p.G658G 0.17 TCGA-FR-A726-01 17 7369728 7369728 G A ZBTB4 Silent p.V131V 0.41 TCGA-FR-A726-01 17 73733428 73733428 C T ITGB4 Silent p.S672S 0.14 TCGA-FR-A726-01 17 73744921 73744921 G A ITGB4 Splice_Site p.X1038_splice 0.15 TCGA-FR-A726-01 17 73753181 73753181 G A ITGB4 Silent p.Q1737Q 0.23 TCGA-FR-A726-01 17 73780853 73780853 G A UNK 5'UTR 0.13 TCGA-FR-A726-01 17 73997488 73997488 C T CDK3 5'UTR 0.27 TCGA-FR-A726-01 17 73999327 73999327 C T CDK3 Missense_Mutation p.R214C 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 17 74005095 74005095 C T EVPL Silent p.E1397E 0.24 TCGA-FR-A726-01 17 74006511 74006511 C T EVPL Silent p.R925R 0.32 TCGA-FR-A726-01 17 74036987 74036987 G A SRP68 Missense_Mutation p.L533F 0.51 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 17 74073089 74073089 C T GALR2 Silent p.L247L 0.27 TCGA-FR-A726-01 17 74075526 74075526 C T ZACN Missense_Mutation p.P35L 0.15 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 17 74075557 74075557 G A ZACN Silent p.K45K 0.30 TCGA-FR-A726-01 17 7412420 7412420 C T POLR2A Missense_Mutation p.S1208F 0.37 probably_damaging(0.995) TCGA-FR-A726-01 17 74290020 74290020 G A QRICH2 Missense_Mutation p.S97F 0.19 tolerated(0.2) benign(0.03) TCGA-FR-A726-01 17 74307596 74307596 G A PRPSAP1 3'UTR 0.29 TCGA-FR-A726-01 17 74394402 74394402 G A UBE2O Silent p.F653F 0.04 TCGA-FR-A726-01 17 74622817 74622817 G A ST6GALNAC1 Silent p.S409S 0.18 TCGA-FR-A726-01 17 74622818 74622818 G A ST6GALNAC1 Missense_Mutation p.S409F 0.18 probably_damaging(0.992) TCGA-FR-A726-01 17 7491694 7491694 G A SOX15 3'UTR 0.06 TCGA-FR-A726-01 17 7499219 7499219 G A FXR2 Nonsense_Mutation p.Q252* 0.37 TCGA-FR-A726-01 17 75212552 75212552 C T SEC14L1 Intron 0.52 TCGA-FR-A726-01 17 7536130 7536130 C T SHBG Missense_Mutation p.P305S 0.35 tolerated(0.07) benign(0.08) TCGA-FR-A726-01 17 76178710 76178710 G A TK1 Missense_Mutation p.A88V 0.13 tolerated(0.11) benign(0.041) TCGA-FR-A726-01 17 76437268 76437268 C T DNAH17 Missense_Mutation p.E3834K 0.22 benign(0.381) TCGA-FR-A726-01 17 76456250 76456250 C T DNAH17 Silent p.L3129L 0.15 TCGA-FR-A726-01 17 76462738 76462738 G A DNAH17 Missense_Mutation p.P2966L 0.25 benign(0.003) TCGA-FR-A726-01 17 76471834 76471834 G A DNAH17 Missense_Mutation p.P2732S 0.30 benign(0.011) TCGA-FR-A726-01 17 76482380 76482380 G A DNAH17 Missense_Mutation p.P2329S 0.24 benign(0.003) TCGA-FR-A726-01 17 76492080 76492080 T G DNAH17 Missense_Mutation p.K1913T 0.17 possibly_damaging(0.907) TCGA-FR-A726-01 17 76510937 76510937 G A DNAH17 Silent p.I1340I 0.18 TCGA-FR-A726-01 17 76511086 76511086 C T DNAH17 Missense_Mutation p.D1291N 0.20 benign(0.007) TCGA-FR-A726-01 17 76511087 76511087 C T DNAH17 Silent p.E1290E 0.19 TCGA-FR-A726-01 17 76525574 76525574 C T DNAH17 Missense_Mutation p.E1163K 0.20 benign(0.044) TCGA-FR-A726-01 17 76525575 76525575 C T DNAH17 Silent p.E1162E 0.19 TCGA-FR-A726-01 17 76525591 76525591 C T DNAH17 Missense_Mutation p.G1157E 0.19 benign(0.031) TCGA-FR-A726-01 17 76547629 76547629 G A DNAH17 Silent p.S793S 0.19 TCGA-FR-A726-01 17 76562747 76562747 C T DNAH17 Silent p.T506T 0.17 TCGA-FR-A726-01 17 76567425 76567425 G A DNAH17 Silent p.I256I 0.12 TCGA-FR-A726-01 17 76568928 76568928 G A DNAH17 Nonsense_Mutation p.Q132* 0.30 TCGA-FR-A726-01 17 7667534 7667534 T A DNAH2 Silent p.P1093P 0.37 TCGA-FR-A726-01 17 7671250 7671250 C T DNAH2 Silent p.I1236I 0.35 TCGA-FR-A726-01 17 76799899 76799899 G A USP36 Missense_Mutation p.S793F 0.12 deleterious_low_confidence(0.04) benign(0.077) TCGA-FR-A726-01 17 76831522 76831522 G A USP36 Silent p.F105F 0.24 TCGA-FR-A726-01 17 7697628 7697628 C T DNAH2 Silent p.S2542S 0.29 TCGA-FR-A726-01 17 7701960 7701960 C T DNAH2 Missense_Mutation p.S2828F 0.27 possibly_damaging(0.845) TCGA-FR-A726-01 17 7701961 7701961 C T DNAH2 Silent p.S2828S 0.28 TCGA-FR-A726-01 17 7749434 7749434 C T KDM6B Missense_Mutation p.S92F 0.24 unknown(0) TCGA-FR-A726-01 17 7752247 7752247 G A KDM6B Missense_Mutation p.E881K 0.40 possibly_damaging(0.486) TCGA-FR-A726-01 17 7760487 7760487 C T LSMD1 Silent p.A85A 0.20 TCGA-FR-A726-01 17 77707376 77707376 C T ENPP7 Silent p.P108P 0.27 TCGA-FR-A726-01 17 77710978 77710978 G A ENPP7 Missense_Mutation p.E389K 0.15 deleterious(0.01) possibly_damaging(0.588) TCGA-FR-A726-01 17 77758404 77758404 C T CBX2 Missense_Mutation p.P388S 0.30 tolerated(0.74) benign(0.001) TCGA-FR-A726-01 17 78063594 78063594 C T CCDC40 Nonsense_Mutation p.Q915* 0.15 TCGA-FR-A726-01 17 78063677 78063677 G A CCDC40 Silent p.R942R 0.28 TCGA-FR-A726-01 17 78078818 78078818 G A GAA Missense_Mutation p.E145K 0.26 tolerated(0.62) benign(0.002) TCGA-FR-A726-01 17 78223035 78223035 C T SLC26A11 Silent p.L535L 0.20 TCGA-FR-A726-01 17 78237388 78237388 C T RNF213 5'UTR 0.22 TCGA-FR-A726-01 17 78321625 78321625 C T RNF213 Missense_Mutation p.P3164S 0.25 probably_damaging(1) TCGA-FR-A726-01 17 78363987 78363987 C T RNF213 Missense_Mutation p.P5154L 0.36 possibly_damaging(0.53) TCGA-FR-A726-01 17 79073861 79073861 C T BAIAP2 Missense_Mutation p.S208F 0.23 tolerated(0.71) probably_damaging(0.966) TCGA-FR-A726-01 17 79205594 79205594 G A ENTHD2 Intron 0.16 TCGA-FR-A726-01 17 79287701 79287701 G A TMEM105 Missense_Mutation p.T47I 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.702) TCGA-FR-A726-01 17 79411763 79411763 C T RP11-1055B8.7 Missense_Mutation p.P861L 0.19 probably_damaging(0.999) TCGA-FR-A726-01 17 79414165 79414165 C T RP11-1055B8.7 Silent p.T1089T 0.21 TCGA-FR-A726-01 17 79414176 79414176 C T RP11-1055B8.7 Missense_Mutation p.A1093V 0.18 benign(0.006) TCGA-FR-A726-01 17 79425953 79425953 G A RP11-1055B8.7 Missense_Mutation p.E1855K 0.27 benign(0.038) TCGA-FR-A726-01 17 7948939 7948939 C T ALOX15B Silent p.L379L 0.35 TCGA-FR-A726-01 17 79517843 79517843 C T C17orf70 Missense_Mutation p.G226E 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 17 79618162 79618162 G A PDE6G Missense_Mutation p.P69L 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A726-01 17 79792372 79792372 C T PPP1R27 Intron 0.15 TCGA-FR-A726-01 17 7979497 7979497 C T ALOX12B Missense_Mutation p.E510K 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-FR-A726-01 17 79801735 79801735 G A P4HB 3'UTR 0.54 TCGA-FR-A726-01 17 7980483 7980483 G A ALOX12B Missense_Mutation p.P367L 0.26 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 17 7980484 7980484 G A ALOX12B Missense_Mutation p.P367S 0.26 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 17 79845991 79845991 G A ALYREF 3'UTR 0.26 TCGA-FR-A726-01 17 7984641 7984641 G A AC129492.6 3'UTR 0.50 TCGA-FR-A726-01 17 79916861 79916861 G A NOTUM Silent p.I161I 0.12 TCGA-FR-A726-01 17 79980701 79980701 C T STRA13 Splice_Site p.X12_splice 0.24 TCGA-FR-A726-01 17 79980702 79980702 C T STRA13 Silent p.K12K 0.24 TCGA-FR-A726-01 17 79993785 79993785 G A DCXR 3'UTR 0.24 TCGA-FR-A726-01 17 80006671 80006671 G A RFNG Silent p.I309I 0.19 TCGA-FR-A726-01 17 80012379 80012379 C T GPS1 Intron 0.22 TCGA-FR-A726-01 17 80018797 80018797 C T DUS1L Missense_Mutation p.V295M 0.25 deleterious(0.05) benign(0.098) TCGA-FR-A726-01 17 80038731 80038731 G A FASN Silent p.S2221S 0.13 TCGA-FR-A726-01 17 80051487 80051487 G A FASN Silent p.F147F 0.21 TCGA-FR-A726-01 17 8006741 8006741 G A ALOXE3 Missense_Mutation p.T751I 0.28 tolerated(0.09) possibly_damaging(0.791) TCGA-FR-A726-01 17 80279957 80279957 G A SECTM1 3'UTR 0.19 TCGA-FR-A726-01 17 80395077 80395077 T A HEXDC Missense_Mutation p.F246Y 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-FR-A726-01 17 80529642 80529642 C T FOXK2 Nonsense_Mutation p.Q269* 0.30 TCGA-FR-A726-01 17 80575194 80575194 G A WDR45B Missense_Mutation p.P262S 0.20 tolerated(0.26) benign(0.004) TCGA-FR-A726-01 17 80919005 80919005 C T B3GNTL1 Missense_Mutation p.G218D 0.26 tolerated(0.49) benign(0.009) TCGA-FR-A726-01 17 8197821 8197821 G A SLC25A35 Missense_Mutation p.P102L 0.43 tolerated(0.66) possibly_damaging(0.642) TCGA-FR-A726-01 17 8216363 8216363 C T ARHGEF15 Missense_Mutation p.S242F 0.31 deleterious(0) probably_damaging(0.952) TCGA-FR-A726-01 17 8216364 8216364 C T ARHGEF15 Silent p.S242S 0.32 TCGA-FR-A726-01 17 8216517 8216517 C T ARHGEF15 Silent p.F293F 0.33 TCGA-FR-A726-01 17 8638781 8638785 ATCTC - CCDC42 Frame_Shift_Del p.E213Pfs*6 0.31 TCGA-FR-A726-01 17 8647397 8647397 C T CCDC42 Silent p.K63K 0.36 TCGA-FR-A726-01 17 8700900 8700900 G A MFSD6L Silent p.F513F 0.29 TCGA-FR-A726-01 17 8701692 8701692 G A MFSD6L Silent p.S249S 0.11 TCGA-FR-A726-01 17 8726805 8726805 G A PIK3R6 Silent p.L509L 0.36 TCGA-FR-A726-01 17 8740147 8740147 C T PIK3R6 Missense_Mutation p.D118N 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 17 8740148 8740148 C T PIK3R6 Silent p.L117L 0.45 TCGA-FR-A726-01 17 8785198 8785198 C T PIK3R5 Missense_Mutation p.G736R 0.48 tolerated(0.26) benign(0.048) TCGA-FR-A726-01 17 8789597 8789597 G A PIK3R5 Missense_Mutation p.H693Y 0.24 tolerated(0.06) possibly_damaging(0.598) TCGA-FR-A726-01 17 882906 882906 G A NXN Silent p.L5L 0.50 TCGA-FR-A726-01 17 882907 882907 G A NXN Silent p.F4F 0.50 TCGA-FR-A726-01 17 9395211 9395211 G A STX8 Missense_Mutation p.S159F 0.31 deleterious(0) possibly_damaging(0.683) TCGA-FR-A726-01 17 9489256 9489256 C T WDR16 Silent p.I79I 0.32 TCGA-FR-A726-01 17 9515626 9515626 G A WDR16 Silent p.K285K 0.27 TCGA-FR-A726-01 17 9792824 9792824 G A GLP2R Silent p.E488E 0.33 TCGA-FR-A726-01 18 10671396 10671396 T C PIEZO2 3'Flank 0.29 TCGA-FR-A726-01 18 10680341 10680341 C T PIEZO2 Missense_Mutation p.E2490K 0.31 tolerated(0.87) benign(0.027) TCGA-FR-A726-01 18 10696169 10696169 G A PIEZO2 Missense_Mutation p.L2252F 0.35 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 18 12277230 12277230 C T CIDEA Silent p.S207S 0.28 TCGA-FR-A726-01 18 12985334 12985334 C T SEH1L Intron 0.69 TCGA-FR-A726-01 18 13049513 13049513 C T CEP192 Missense_Mutation p.S908L 0.28 tolerated(0.67) benign(0.034) TCGA-FR-A726-01 18 14533139 14533139 C T POTEC Missense_Mutation p.E326K 0.38 tolerated(0.1) benign(0.132) TCGA-FR-A726-01 18 14542690 14542690 G A POTEC Silent p.V152V 0.36 TCGA-FR-A726-01 18 14542972 14542972 C T POTEC Silent p.R58R 0.20 TCGA-FR-A726-01 18 14763877 14763877 A T ANKRD30B Missense_Mutation p.K338I 0.24 deleterious(0) possibly_damaging(0.558) TCGA-FR-A726-01 18 14796384 14796384 G A ANKRD30B Missense_Mutation p.E633K 0.33 tolerated(0.05) possibly_damaging(0.549) TCGA-FR-A726-01 18 19751017 19751017 C T GATA6 Intron 0.32 TCGA-FR-A726-01 18 19996108 19996108 C T CTAGE1 Missense_Mutation p.R556K 0.34 tolerated(0.06) benign(0.106) TCGA-FR-A726-01 18 21061327 21061327 C T RIOK3 3'UTR 0.19 TCGA-FR-A726-01 18 21181243 21181243 T A ANKRD29 Missense_Mutation p.N285Y 0.35 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 18 21390454 21390454 C T LAMA3 Silent p.F576F 0.40 TCGA-FR-A726-01 18 21478966 21478966 C T LAMA3 Missense_Mutation p.R1925W 0.39 possibly_damaging(0.846) TCGA-FR-A726-01 18 21487828 21487828 G A LAMA3 Missense_Mutation p.R2315K 0.35 benign(0.035) TCGA-FR-A726-01 18 21501019 21501019 G A LAMA3 Splice_Site p.X2681_splice 0.29 TCGA-FR-A726-01 18 21511023 21511023 C T LAMA3 Intron 0.28 TCGA-FR-A726-01 18 22023054 22023054 C T IMPACT Missense_Mutation p.P178S 0.32 tolerated(0.24) benign(0.132) TCGA-FR-A726-01 18 22642559 22642559 G A ZNF521 3'UTR 0.31 TCGA-FR-A726-01 18 22807178 22807178 G A ZNF521 Missense_Mutation p.S235F 0.30 deleterious(0.02) possibly_damaging(0.825) TCGA-FR-A726-01 18 22901963 22901983 ATTGTTTACCTGTCAGTTGAC - ZNF521 Splice_Site p.X70_splice 0.25 TCGA-FR-A726-01 18 24496536 24496536 G A CHST9 Missense_Mutation p.S340F 0.36 deleterious(0.04) probably_damaging(0.954) TCGA-FR-A726-01 18 24628466 24628466 C T CHST9 Silent p.G41G 0.09 TCGA-FR-A726-01 18 25543323 25543323 C T CDH2 Missense_Mutation p.E838K 0.34 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 18 25583005 25583005 C T CDH2 Missense_Mutation p.E326K 0.32 tolerated(0.38) benign(0.011) TCGA-FR-A726-01 18 2595510 2595510 C T NDC80 Missense_Mutation p.H371Y 0.44 tolerated(0.86) benign(0.005) TCGA-FR-A726-01 18 2762184 2762184 C T SMCHD1 Missense_Mutation p.R1506C 0.44 deleterious(0.01) possibly_damaging(0.614) TCGA-FR-A726-01 18 28576871 28576871 C T DSC3 Silent p.R793R 0.25 TCGA-FR-A726-01 18 28584291 28584291 G A DSC3 Nonsense_Mutation p.Q644* 0.27 TCGA-FR-A726-01 18 28588280 28588280 C T DSC3 Missense_Mutation p.G492D 0.41 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 18 28598666 28598666 G A DSC3 Missense_Mutation p.S348L 0.27 tolerated(0.24) possibly_damaging(0.642) TCGA-FR-A726-01 18 28598708 28598708 C T DSC3 Missense_Mutation p.G334E 0.33 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 18 28667705 28667705 C T DSC2 Silent p.E234E 0.28 TCGA-FR-A726-01 18 28711452 28711452 G A DSC1 Intron 0.40 TCGA-FR-A726-01 18 28711473 28711473 G A DSC1 Intron 0.32 TCGA-FR-A726-01 18 28713945 28713945 C T DSC1 Missense_Mutation p.M675I 0.33 tolerated(0.54) benign(0.012) TCGA-FR-A726-01 18 28713970 28713970 C A DSC1 Missense_Mutation p.C667F 0.18 deleterious(0) possibly_damaging(0.901) TCGA-FR-A726-01 18 28720259 28720259 C T DSC1 Silent p.L422L 0.24 TCGA-FR-A726-01 18 28723655 28723655 C T DSC1 Missense_Mutation p.E347K 0.37 tolerated(0.06) possibly_damaging(0.538) TCGA-FR-A726-01 18 28723666 28723666 G A DSC1 Missense_Mutation p.S343L 0.31 tolerated(0.06) possibly_damaging(0.742) TCGA-FR-A726-01 18 28739474 28739474 C T DSC1 Missense_Mutation p.D28N 0.27 deleterious(0.04) benign(0.056) TCGA-FR-A726-01 18 28898242 28898242 G A DSG1 5'UTR 0.32 TCGA-FR-A726-01 18 2891839 2891839 G A EMILIN2 Missense_Mutation p.E572K 0.42 tolerated(0.36) benign(0.169) TCGA-FR-A726-01 18 28935119 28935119 G A DSG1 Missense_Mutation p.G987E 0.27 tolerated(0.09) probably_damaging(0.972) TCGA-FR-A726-01 18 29039024 29039024 G A DSG3 Missense_Mutation p.G134E 0.22 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 18 29039894 29039894 G A DSG3 Missense_Mutation p.E202K 0.27 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 18 29049213 29049213 C T DSG3 Missense_Mutation p.P600S 0.33 tolerated(0.34) benign(0.115) TCGA-FR-A726-01 18 29055712 29055712 C T DSG3 Missense_Mutation p.S830F 0.23 deleterious(0) probably_damaging(0.963) TCGA-FR-A726-01 18 29056231 29056231 G A DSG3 3'UTR 0.41 TCGA-FR-A726-01 18 29867536 29867536 C G GAREM Missense_Mutation p.A342P 0.42 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 18 30091887 30091887 G A WBP11P1 RNA 0.09 TCGA-FR-A726-01 18 30092692 30092692 G A WBP11P1 RNA 0.31 TCGA-FR-A726-01 18 30093451 30093451 C T WBP11P1 RNA 0.34 TCGA-FR-A726-01 18 30093690 30093690 C T WBP11P1 RNA 0.40 TCGA-FR-A726-01 18 30928886 30928886 G A CCDC178 Missense_Mutation p.P142L 0.24 tolerated(0.08) benign(0.055) TCGA-FR-A726-01 18 31314324 31314324 G A ASXL3 Missense_Mutation p.E343K 0.24 probably_damaging(0.999) TCGA-FR-A726-01 18 31319743 31319743 C T ASXL3 Missense_Mutation p.P792L 0.25 benign(0.008) TCGA-FR-A726-01 18 31323674 31323674 A G ASXL3 Missense_Mutation p.T1288A 0.28 benign(0.005) TCGA-FR-A726-01 18 31323921 31323921 C T ASXL3 Missense_Mutation p.P1370L 0.35 benign(0.068) TCGA-FR-A726-01 18 31324651 31324651 G A ASXL3 Silent p.G1613G 0.26 TCGA-FR-A726-01 18 31803118 31803118 C T NOL4 Missense_Mutation p.E34K 0.27 tolerated(0.26) benign(0.095) TCGA-FR-A726-01 18 32459550 32459550 G A DTNA Missense_Mutation p.E590K 0.32 tolerated(0.06) benign(0.01) TCGA-FR-A726-01 18 32825331 32825331 A G ZNF397 Missense_Mutation p.N221S 0.24 tolerated(0.78) benign(0.003) TCGA-FR-A726-01 18 33484794 33484794 C T MIR187 RNA 0.50 TCGA-FR-A726-01 18 33779935 33779935 C T MOCOS Missense_Mutation p.L197F 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 18 34191995 34191995 C T FHOD3 Silent p.S298S 0.31 TCGA-FR-A726-01 18 34340720 34340720 C T FHOD3 Silent p.V1350V 0.34 TCGA-FR-A726-01 18 34850798 34850798 G A CELF4 Silent p.L344L 0.32 TCGA-FR-A726-01 18 40503583 40503583 G A RIT2 Missense_Mutation p.P127L 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 18 40850545 40850545 T C SYT4 Missense_Mutation p.K347E 0.34 deleterious(0) possibly_damaging(0.804) TCGA-FR-A726-01 18 42531327 42531327 G A SETBP1 Silent p.R674R 0.27 TCGA-FR-A726-01 18 43440125 43440125 G A EPG5 Missense_Mutation p.S2318F 0.34 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 18 43565378 43565378 C T PSTPIP2 3'UTR 0.18 TCGA-FR-A726-01 18 44559368 44559368 C T TCEB3B 3'UTR 0.31 TCGA-FR-A726-01 18 45396871 45396871 G A SMAD2 Missense_Mutation p.L101F 0.07 tolerated_low_confidence(0.09) benign(0.078) TCGA-FR-A726-01 18 45566797 45566797 C T ZBTB7C Missense_Mutation p.E228K 0.37 deleterious(0.02) possibly_damaging(0.537) TCGA-FR-A726-01 18 46645140 46645140 G A DYM Nonsense_Mutation p.Q574* 0.32 TCGA-FR-A726-01 18 47402141 47402141 C T MYO5B Silent p.K1151K 0.05 TCGA-FR-A726-01 18 47428987 47428987 G A MYO5B Silent p.L930L 0.35 TCGA-FR-A726-01 18 47429093 47429093 G A MYO5B Silent p.F894F 0.28 TCGA-FR-A726-01 18 47429135 47429135 G A MYO5B Silent p.F880F 0.34 TCGA-FR-A726-01 18 47432805 47432805 C T MYO5B Missense_Mutation p.G800R 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-FR-A726-01 18 47432994 47432994 C T MYO5B Missense_Mutation p.D737N 0.21 tolerated(0.17) possibly_damaging(0.821) TCGA-FR-A726-01 18 47463768 47463768 C T MYO5B Splice_Site p.X585_splice 0.25 TCGA-FR-A726-01 18 47527697 47527697 G A MYO5B Silent p.F180F 0.32 TCGA-FR-A726-01 18 47769387 47769387 C T CCDC11 Missense_Mutation p.E366K 0.33 tolerated(0.13) benign(0.026) TCGA-FR-A726-01 18 48190201 48190201 G A MAPK4 5'UTR 0.32 TCGA-FR-A726-01 18 48190589 48190589 G A MAPK4 Silent p.K87K 0.26 TCGA-FR-A726-01 18 48248367 48248367 G A MAPK4 Missense_Mutation p.E251K 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-FR-A726-01 18 48255801 48255801 G A MAPK4 Silent p.K447K 0.29 TCGA-FR-A726-01 18 50278564 50278564 G A DCC Missense_Mutation p.G78S 0.40 deleterious(0.02) possibly_damaging(0.622) TCGA-FR-A726-01 18 50278669 50278669 G A DCC Missense_Mutation p.G113R 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 18 50683792 50683792 G A DCC Missense_Mutation p.R443Q 0.37 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 18 50912472 50912472 C T DCC Missense_Mutation p.P807S 0.28 deleterious(0) possibly_damaging(0.866) TCGA-FR-A726-01 18 50929202 50929202 G A DCC Silent p.G958G 0.33 TCGA-FR-A726-01 18 50985632 50985632 G A DCC Silent p.R1141R 0.29 TCGA-FR-A726-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.37 TCGA-FR-A726-01 18 52262317 52262317 G A DYNAP Missense_Mutation p.E95K 0.32 tolerated(0.08) possibly_damaging(0.801) TCGA-FR-A726-01 18 52596091 52596091 C T CCDC68 Missense_Mutation p.R208K 0.30 tolerated(1) benign(0.003) TCGA-FR-A726-01 18 52937092 52937092 G A TCF4 Missense_Mutation p.P400S 0.40 tolerated(0.07) probably_damaging(0.91) TCGA-FR-A726-01 18 53131334 53131334 C T TCF4 Silent p.G162G 0.27 TCGA-FR-A726-01 18 54385328 54385328 C T WDR7 Missense_Mutation p.S571F 0.22 tolerated(0.64) possibly_damaging(0.541) TCGA-FR-A726-01 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.29 TCGA-FR-A726-01 18 56184192 56184192 C T ALPK2 Missense_Mutation p.G1963E 0.05 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 18 56202183 56202183 C T ALPK2 Missense_Mutation p.E1746K 0.32 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 18 56202812 56202812 G A ALPK2 Missense_Mutation p.S1536F 0.34 tolerated(0.16) benign(0.006) TCGA-FR-A726-01 18 56204466 56204466 G A ALPK2 Missense_Mutation p.P985S 0.26 tolerated(0.12) possibly_damaging(0.539) TCGA-FR-A726-01 18 56205220 56205220 G A ALPK2 Silent p.F733F 0.26 TCGA-FR-A726-01 18 56205362 56205362 G A ALPK2 Missense_Mutation p.T686I 0.33 deleterious(0.01) possibly_damaging(0.614) TCGA-FR-A726-01 18 56246378 56246378 C T ALPK2 Missense_Mutation p.G544R 0.31 deleterious(0) possibly_damaging(0.903) TCGA-FR-A726-01 18 56247440 56247440 G A ALPK2 Missense_Mutation p.P190S 0.35 tolerated(0.12) benign(0.186) TCGA-FR-A726-01 18 57115254 57115254 G A CCBE1 Missense_Mutation p.P246S 0.39 tolerated(0.08) benign(0.403) TCGA-FR-A726-01 18 57122113 57122113 C T CCBE1 Missense_Mutation p.M208I 0.38 tolerated(0.5) benign(0.008) TCGA-FR-A726-01 18 57363926 57363926 C T CCBE1 Silent p.E49E 0.26 TCGA-FR-A726-01 18 58038616 58038616 C T MC4R Missense_Mutation p.G323R 0.32 tolerated_low_confidence(1) benign(0.002) TCGA-FR-A726-01 18 5891625 5891625 G A TMEM200C Silent p.S146S 0.33 TCGA-FR-A726-01 18 59157668 59157668 G A CDH20 5'UTR 0.34 TCGA-FR-A726-01 18 59195293 59195293 C T CDH20 Nonsense_Mutation p.Q371* 0.32 TCGA-FR-A726-01 18 59483062 59483062 A C RNF152 3'UTR 0.30 TCGA-FR-A726-01 18 59483154 59483154 G A RNF152 Silent p.F181F 0.28 TCGA-FR-A726-01 18 59483565 59483565 G A RNF152 Silent p.T44T 0.38 TCGA-FR-A726-01 18 5969487 5969487 G A L3MBTL4 Missense_Mutation p.R516W 0.42 deleterious(0.01) benign(0.012) TCGA-FR-A726-01 18 59828495 59828495 C T PIGN Missense_Mutation p.G31E 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 18 60021700 60021700 G A TNFRSF11A Nonsense_Mutation p.W120* 0.33 TCGA-FR-A726-01 18 61089479 61089479 G A VPS4B Missense_Mutation p.S5L 0.24 deleterious(0.01) benign(0) TCGA-FR-A726-01 18 61156688 61156688 C T SERPINB5 Missense_Mutation p.L139F 0.27 deleterious(0.04) possibly_damaging(0.508) TCGA-FR-A726-01 18 61256032 61256032 G A SERPINB13 Missense_Mutation p.G44E 0.38 deleterious(0.01) benign(0.202) TCGA-FR-A726-01 18 61260125 61260125 C T SERPINB13 Missense_Mutation p.S131F 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-FR-A726-01 18 61322710 61322710 T C SERPINB3 3'UTR 0.31 TCGA-FR-A726-01 18 61323203 61323203 G A SERPINB3 Silent p.F287F 0.27 TCGA-FR-A726-01 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.34 deleterious(0.01) possibly_damaging(0.663) TCGA-FR-A726-01 18 61383346 61383346 G A SERPINB11 Silent p.T145T 0.45 TCGA-FR-A726-01 18 61387302 61387302 C T SERPINB11 Silent p.V177V 0.28 TCGA-FR-A726-01 18 61570257 61570257 C T SERPINB2 Silent p.S322S 0.27 TCGA-FR-A726-01 18 6264018 6264018 C T L3MBTL4 Silent p.Q49Q 0.26 TCGA-FR-A726-01 18 63489451 63489451 G A CDH7 Missense_Mutation p.D254N 0.44 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 18 63530225 63530225 C T CDH7 Intron 0.30 TCGA-FR-A726-01 18 63547647 63547647 C T CDH7 Silent p.L625L 0.22 TCGA-FR-A726-01 18 65178431 65178431 C T DSEL Missense_Mutation p.E1149K 0.26 tolerated(0.47) probably_damaging(0.958) TCGA-FR-A726-01 18 65181491 65181491 C T DSEL Missense_Mutation p.E129K 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 18 66506087 66506087 G A CCDC102B Missense_Mutation p.E251K 0.39 tolerated(0.08) benign(0.085) TCGA-FR-A726-01 18 67406215 67406215 G A DOK6 Missense_Mutation p.G205E 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 18 67406220 67406220 G A DOK6 Missense_Mutation p.G207R 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 18 67684703 67684703 G A RTTN Missense_Mutation p.L2121F 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 18 67843957 67843957 G A RTTN Missense_Mutation p.S477F 0.31 deleterious(0) possibly_damaging(0.82) TCGA-FR-A726-01 18 6948525 6948525 C T LAMA1 Missense_Mutation p.D2863N 0.48 tolerated(1) benign(0.013) TCGA-FR-A726-01 18 6966249 6966249 G A LAMA1 Missense_Mutation p.S2316F 0.44 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 18 70205419 70205419 G A CBLN2 Missense_Mutation p.P223S 0.36 deleterious(0.01) benign(0.186) TCGA-FR-A726-01 18 70502514 70502514 G A NETO1 Intron 0.36 TCGA-FR-A726-01 18 7050876 7050876 C T LAMA1 Nonsense_Mutation p.W135* 0.56 TCGA-FR-A726-01 18 71740900 71740900 G A FBXO15 Silent p.S443S 0.31 TCGA-FR-A726-01 18 7231808 7231808 C T LRRC30 Silent p.F224F 0.41 TCGA-FR-A726-01 18 7232003 7232003 G A LRRC30 Silent p.E289E 0.49 TCGA-FR-A726-01 18 72346708 72346708 C T ZNF407 Missense_Mutation p.P1245S 0.24 tolerated(0.76) benign(0.004) TCGA-FR-A726-01 18 73000705 73000705 C T TSHZ1 3'UTR 0.20 TCGA-FR-A726-01 18 739795 739795 G A YES1 Silent p.F359F 0.49 TCGA-FR-A726-01 18 74680414 74680414 C T ZNF236 3'UTR 0.38 TCGA-FR-A726-01 18 74963080 74963080 C T GALR1 Silent p.P192P 0.30 TCGA-FR-A726-01 18 76754278 76754278 G A SALL3 Missense_Mutation p.G763S 0.24 deleterious(0.02) possibly_damaging(0.579) TCGA-FR-A726-01 18 77137384 77137384 G A ATP9B 3'UTR 0.26 TCGA-FR-A726-01 18 77171484 77171484 C T NFATC1 Silent p.S390S 0.31 TCGA-FR-A726-01 18 77287543 77287543 G A NFATC1 Missense_Mutation p.R920Q 0.23 tolerated(0.12) benign(0.009) TCGA-FR-A726-01 18 77624286 77624286 G A KCNG2 Missense_Mutation p.E207K 0.33 tolerated(0.08) benign(0.02) TCGA-FR-A726-01 18 77894554 77894554 C T ADNP2 Missense_Mutation p.P420S 0.40 tolerated(0.17) benign(0.091) TCGA-FR-A726-01 18 905486 905486 C T ADCYAP1 Silent p.F33F 0.27 TCGA-FR-A726-01 18 9557371 9557371 G A PPP4R1 Nonsense_Mutation p.R680* 0.29 TCGA-FR-A726-01 19 10071440 10071440 C T COL5A3 Missense_Mutation p.E1660K 0.39 unknown(0) TCGA-FR-A726-01 19 10079376 10079376 C T COL5A3 Missense_Mutation p.G1394E 0.40 unknown(0) TCGA-FR-A726-01 19 10158008 10158008 G A C3P1 RNA 0.29 TCGA-FR-A726-01 19 10250843 10250843 G A DNMT1 Nonsense_Mutation p.Q1229* 0.34 TCGA-FR-A726-01 19 10291458 10291458 G A DNMT1 Missense_Mutation p.S74F 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A726-01 19 10449691 10449691 C T ICAM3 Intron 0.31 TCGA-FR-A726-01 19 10476346 10476346 G A TYK2 Silent p.A286A 0.40 TCGA-FR-A726-01 19 10503964 10503964 G A CDC37 Missense_Mutation p.P294S 0.08 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 19 1052008 1052008 G A ABCA7 Silent p.V1010V 0.38 TCGA-FR-A726-01 19 10602850 10602850 G A KEAP1 Missense_Mutation p.S243F 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-FR-A726-01 19 10790537 10790537 C T ILF3 Missense_Mutation p.P265S 0.30 deleterious(0.04) probably_damaging(0.988) TCGA-FR-A726-01 19 10822955 10822955 C T QTRT1 Silent p.P255P 0.27 TCGA-FR-A726-01 19 10822956 10822956 C T QTRT1 Nonsense_Mutation p.R256* 0.27 TCGA-FR-A726-01 19 10893656 10893656 C T DNM2 Missense_Mutation p.R237C 0.30 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 19 10935753 10935753 C T DNM2 Silent p.A638A 0.29 TCGA-FR-A726-01 19 11019776 11019776 C T CARM1 Intron 0.31 TCGA-FR-A726-01 19 11135035 11135035 C T SMARCA4 Missense_Mutation p.S1001F 0.32 benign(0.22) TCGA-FR-A726-01 19 11170556 11170556 C T SMARCA4 Missense_Mutation p.S1588F 0.27 possibly_damaging(0.62) TCGA-FR-A726-01 19 11417336 11417336 G A TSPAN16 Missense_Mutation p.M169I 0.29 tolerated(0.25) benign(0.013) TCGA-FR-A726-01 19 11537035 11537035 C T CCDC151 Missense_Mutation p.E298K 0.30 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 19 11541596 11541596 C T CCDC151 Missense_Mutation p.G123R 0.33 deleterious(0.05) possibly_damaging(0.554) TCGA-FR-A726-01 19 11569314 11569314 C T ELAVL3 Missense_Mutation p.G149D 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 19 11569315 11569315 C T ELAVL3 Missense_Mutation p.G149S 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 11625030 11625030 G A ECSIT Missense_Mutation p.R35C 0.35 tolerated(0.11) benign(0.001) TCGA-FR-A726-01 19 11977098 11977098 C T ZNF439 Missense_Mutation p.L43F 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 12430169 12430169 G A ZNF563 Missense_Mutation p.P224S 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-FR-A726-01 19 12460977 12460977 G A ZNF442 Silent p.S474S 0.26 TCGA-FR-A726-01 19 12462840 12462840 G A ZNF442 Missense_Mutation p.P84S 0.26 tolerated(0.35) benign(0.118) TCGA-FR-A726-01 19 12491175 12491175 G A CTD-3105H18.14 3'UTR 0.34 TCGA-FR-A726-01 19 12502756 12502756 G A ZNF799 Silent p.Y152Y 0.32 TCGA-FR-A726-01 19 12540919 12540919 G A ZNF443 3'UTR 0.29 TCGA-FR-A726-01 19 12691260 12691260 G A ZNF490 3'UTR 0.30 TCGA-FR-A726-01 19 12767477 12767477 G A MAN2B1 Silent p.L518L 0.31 TCGA-FR-A726-01 19 12779212 12779212 G A WDR83OS Silent p.S94S 0.36 TCGA-FR-A726-01 19 12799935 12799935 G A FBXW9 3'UTR 0.35 TCGA-FR-A726-01 19 13084270 13084270 C T DAND5 Missense_Mutation p.S131F 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 13189451 13189451 G A NFIX Missense_Mutation p.G327E 0.40 tolerated(1) benign(0.011) TCGA-FR-A726-01 19 13386749 13386749 G A CACNA1A Silent p.L1302L 0.31 TCGA-FR-A726-01 19 13409695 13409695 C T CACNA1A Missense_Mutation p.G918S 0.33 probably_damaging(0.97) TCGA-FR-A726-01 19 13423587 13423587 C T CACNA1A Missense_Mutation p.E522K 0.38 possibly_damaging(0.801) TCGA-FR-A726-01 19 1390896 1390896 C T NDUFS7 Silent p.G85G 0.26 TCGA-FR-A726-01 19 13941605 13941605 C T ZSWIM4 Missense_Mutation p.P904L 0.35 tolerated(0.88) unknown(0) TCGA-FR-A726-01 19 14029358 14029358 C T CC2D1A Silent p.P305P 0.39 TCGA-FR-A726-01 19 14034157 14034157 C T CC2D1A Silent p.A551A 0.27 TCGA-FR-A726-01 19 14041199 14041199 C T CC2D1A Silent p.L949L 0.34 TCGA-FR-A726-01 19 14262009 14262009 C T LPHN1 Silent p.E1367E 0.32 TCGA-FR-A726-01 19 14512363 14512363 C T CD97 Missense_Mutation p.P355S 0.08 tolerated(0.35) benign(0.08) TCGA-FR-A726-01 19 14512364 14512364 C T CD97 Missense_Mutation p.P355L 0.07 deleterious(0.02) benign(0.062) TCGA-FR-A726-01 19 14522340 14522340 G A DDX39A Missense_Mutation p.S136F 0.35 deleterious(0) probably_damaging(0.925) TCGA-FR-A726-01 19 1452897 1452897 G A APC2 5'UTR 0.38 TCGA-FR-A726-01 19 14730181 14730181 A T EMR3 3'UTR 0.24 TCGA-FR-A726-01 19 15063742 15063742 G A SLC1A6 Silent p.F499F 0.36 TCGA-FR-A726-01 19 1510858 1510858 C T ADAMTSL5 Missense_Mutation p.G29R 0.30 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-FR-A726-01 19 15124579 15124579 C T CCDC105 Silent p.V222V 0.29 TCGA-FR-A726-01 19 15198504 15198504 C T OR1I1 Missense_Mutation p.P210S 0.30 deleterious(0.01) probably_damaging(0.956) TCGA-FR-A726-01 19 15271306 15271306 C T NOTCH3 3'UTR 0.27 TCGA-FR-A726-01 19 15302860 15302860 G A NOTCH3 Missense_Mutation p.P197L 0.33 tolerated(0.26) benign(0.008) TCGA-FR-A726-01 19 15349918 15349918 G A BRD4 Missense_Mutation p.A1245V 0.33 possibly_damaging(0.483) TCGA-FR-A726-01 19 15350596 15350596 G A BRD4 Missense_Mutation p.L1107F 0.09 possibly_damaging(0.587) TCGA-FR-A726-01 19 15376368 15376368 G A BRD4 Missense_Mutation p.P216S 0.26 unknown(0) TCGA-FR-A726-01 19 15484055 15484055 G A AKAP8 Silent p.F156F 0.27 TCGA-FR-A726-01 19 15740094 15740094 G A CYP4F8 RNA 0.14 TCGA-FR-A726-01 19 15758110 15758110 C T CYP4F3 Silent p.F167F 0.29 TCGA-FR-A726-01 19 15789169 15789169 C T CYP4F12 Silent p.I99I 0.07 TCGA-FR-A726-01 19 15793273 15793273 G A CYP4F12 Silent p.L200L 0.36 TCGA-FR-A726-01 19 15852663 15852663 C T OR10H3 Missense_Mutation p.S154L 0.39 tolerated(0.67) benign(0.031) TCGA-FR-A726-01 19 15918812 15918812 G A OR10H1 Silent p.F12F 0.34 TCGA-FR-A726-01 19 16000317 16000317 G A CYP4F2 Silent p.L278L 0.14 TCGA-FR-A726-01 19 16000433 16000433 G A CYP4F2 Missense_Mutation p.L240F 0.32 tolerated(0.89) benign(0.007) TCGA-FR-A726-01 19 16001145 16001145 G A CYP4F2 Silent p.F208F 0.31 TCGA-FR-A726-01 19 16060278 16060278 C T OR10H4 Missense_Mutation p.S154L 0.34 tolerated(0.69) benign(0.042) TCGA-FR-A726-01 19 16314278 16314278 C T AP1M1 Silent p.I17I 0.41 TCGA-FR-A726-01 19 16497018 16497018 G A EPS15L1 Missense_Mutation p.P710S 0.30 deleterious(0.03) benign(0.121) TCGA-FR-A726-01 19 16591433 16591433 C T CALR3 Missense_Mutation p.E335K 0.34 tolerated(0.95) benign(0.002) TCGA-FR-A726-01 19 16639015 16639015 G A CHERP Missense_Mutation p.P394L 0.32 tolerated_low_confidence(0.11) benign(0.026) TCGA-FR-A726-01 19 16652741 16652741 G A CHERP Missense_Mutation p.L47F 0.31 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 19 16860971 16860971 C T NWD1 Silent p.L506L 0.36 TCGA-FR-A726-01 19 16980375 16980375 C T SIN3B Silent p.I669I 0.36 TCGA-FR-A726-01 19 16980720 16980720 C T SIN3B Silent p.F784F 0.33 TCGA-FR-A726-01 19 17039857 17039857 G A CPAMD8 Silent p.S1060S 0.39 TCGA-FR-A726-01 19 17186280 17186280 G A HAUS8 5'UTR 0.33 TCGA-FR-A726-01 19 17212523 17212523 G A MYO9B 5'UTR 0.31 TCGA-FR-A726-01 19 17375083 17375083 C T USHBP1 Missense_Mutation p.R9Q 0.43 deleterious(0) unknown(0) TCGA-FR-A726-01 19 17438295 17438295 G A ANO8 Silent p.F834F 0.44 TCGA-FR-A726-01 19 17571363 17571363 C T NXNL1 Missense_Mutation p.D106N 0.31 tolerated(0.13) benign(0.215) TCGA-FR-A726-01 19 17743631 17743631 C T UNC13A Missense_Mutation p.E1130K 0.35 deleterious(0.02) benign(0.285) TCGA-FR-A726-01 19 1783000 1783000 C T ATP8B3 3'UTR 0.40 TCGA-FR-A726-01 19 17893837 17893837 G A FCHO1 Missense_Mutation p.R650Q 0.43 deleterious(0.01) possibly_damaging(0.664) TCGA-FR-A726-01 19 17895692 17895692 G A FCHO1 Silent p.G795G 0.36 TCGA-FR-A726-01 19 17943362 17943362 G A JAK3 Silent p.F882F 0.05 TCGA-FR-A726-01 19 18170728 18170728 C T IL12RB1 Silent p.E653E 0.20 TCGA-FR-A726-01 19 18327706 18327706 C T PDE4C Splice_Site p.X444_splice 0.37 TCGA-FR-A726-01 19 18779140 18779140 C T KLHL26 Silent p.L311L 0.28 TCGA-FR-A726-01 19 19040140 19040140 G A HOMER3 3'UTR 0.21 TCGA-FR-A726-01 19 19135713 19135713 G A SUGP2 Missense_Mutation p.L482F 0.38 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 19135714 19135714 G A SUGP2 Silent p.A481A 0.38 TCGA-FR-A726-01 19 19216374 19216374 C T SLC25A42 Missense_Mutation p.A73V 0.26 deleterious(0.03) possibly_damaging(0.764) TCGA-FR-A726-01 19 19349199 19349199 G A NCAN Missense_Mutation p.E1130K 0.25 deleterious(0.01) possibly_damaging(0.766) TCGA-FR-A726-01 19 19378874 19378874 C T TM6SF2 Missense_Mutation p.G211E 0.18 tolerated(0.16) possibly_damaging(0.543) TCGA-FR-A726-01 19 19387373 19387373 G A SUGP1 3'UTR 0.38 TCGA-FR-A726-01 19 19656475 19656475 G A CILP2 Missense_Mutation p.E1041K 0.17 tolerated(0.06) benign(0.028) TCGA-FR-A726-01 19 19735202 19735202 G A LPAR2 Missense_Mutation p.R307C 0.36 deleterious(0) possibly_damaging(0.899) TCGA-FR-A726-01 19 19735203 19735203 G A LPAR2 Silent p.F306F 0.37 TCGA-FR-A726-01 19 19916844 19916844 G A ZNF506 Silent p.P74P 0.06 TCGA-FR-A726-01 19 20045187 20045187 C T ZNF93 Missense_Mutation p.H475Y 0.22 deleterious(0.02) benign(0.371) TCGA-FR-A726-01 19 20117040 20117040 G A ZNF682 Missense_Mutation p.P424L 0.22 deleterious(0.04) possibly_damaging(0.517) TCGA-FR-A726-01 19 20117565 20117565 C T ZNF682 Missense_Mutation p.R249K 0.09 tolerated(0.58) benign(0.117) TCGA-FR-A726-01 19 20228649 20228649 C T ZNF90 Nonsense_Mutation p.Q96* 0.21 TCGA-FR-A726-01 19 20229954 20229954 C T ZNF90 Missense_Mutation p.H531Y 0.31 deleterious(0.03) benign(0.036) TCGA-FR-A726-01 19 20607649 20607649 G A ZNF826P RNA 0.36 TCGA-FR-A726-01 19 20807842 20807842 C T ZNF626 Missense_Mutation p.E281K 0.30 deleterious(0.01) benign(0.315) TCGA-FR-A726-01 19 20808289 20808289 C T ZNF626 Missense_Mutation p.E132K 0.28 tolerated(0.36) benign(0.104) TCGA-FR-A726-01 19 21240040 21240040 G A ZNF430 Missense_Mutation p.R309K 0.31 tolerated(0.64) benign(0.057) TCGA-FR-A726-01 19 2129160 2129160 G A AP3D1 Silent p.F245F 0.29 TCGA-FR-A726-01 19 21606969 21606969 C T ZNF493 Missense_Mutation p.T503I 0.29 tolerated(0.28) benign(0.102) TCGA-FR-A726-01 19 21646559 21646559 C T CTD-2561J22.5 RNA 0.32 TCGA-FR-A726-01 19 21910772 21910772 G A ZNF100 Silent p.P114P 0.35 TCGA-FR-A726-01 19 21990825 21990825 G A ZNF43 Missense_Mutation p.H672Y 0.29 deleterious(0.03) probably_damaging(0.966) TCGA-FR-A726-01 19 2213479 2213479 C T DOT1L Intron 0.38 TCGA-FR-A726-01 19 22156113 22156113 G A ZNF208 Missense_Mutation p.H575Y 0.23 deleterious(0.03) possibly_damaging(0.472) TCGA-FR-A726-01 19 22157242 22157242 C T ZNF208 Silent p.E198E 0.30 TCGA-FR-A726-01 19 22271836 22271836 G A ZNF257 Silent p.E428E 0.27 TCGA-FR-A726-01 19 22272217 22272217 C T ZNF257 Silent p.S555S 0.41 TCGA-FR-A726-01 19 22364101 22364101 C T ZNF676 Missense_Mutation p.G140S 0.28 tolerated(0.25) benign(0.008) TCGA-FR-A726-01 19 22575685 22575685 C T ZNF98 Missense_Mutation p.E118K 0.48 tolerated(0.28) benign(0.099) TCGA-FR-A726-01 19 22605036 22605036 G A ZNF98 5'UTR 0.29 TCGA-FR-A726-01 19 22783035 22783035 G A AC011467.1 5'Flank 0.33 TCGA-FR-A726-01 19 22785429 22785429 G A AC011467.1 5'Flank 0.30 TCGA-FR-A726-01 19 22836201 22836201 G A ZNF492 5'UTR 0.26 TCGA-FR-A726-01 19 22939768 22939768 C T ZNF99 3'Flank 0.29 TCGA-FR-A726-01 19 2321787 2321787 G A LSM7 Silent p.T68T 0.36 TCGA-FR-A726-01 19 23299837 23299837 C T ZNF730 5'UTR 0.28 TCGA-FR-A726-01 19 23299932 23299932 G A ZNF730 5'UTR 0.27 TCGA-FR-A726-01 19 23329600 23329600 G A ZNF730 3'UTR 0.21 TCGA-FR-A726-01 19 23542567 23542567 G A ZNF91 Missense_Mutation p.H1072Y 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-FR-A726-01 19 23927064 23927064 C T ZNF681 Missense_Mutation p.A430T 0.23 tolerated(0.07) benign(0) TCGA-FR-A726-01 19 23928065 23928065 T C ZNF681 Missense_Mutation p.Q96R 0.28 deleterious(0.03) benign(0.403) TCGA-FR-A726-01 19 23941660 23941660 G A ZNF681 5'UTR 0.24 TCGA-FR-A726-01 19 24010107 24010107 C T RPSAP58 Silent p.I48I 0.25 TCGA-FR-A726-01 19 2515077 2515077 G A GNG7 Silent p.V50V 0.33 TCGA-FR-A726-01 19 2853117 2853117 C T ZNF555 Missense_Mutation p.L352F 0.25 tolerated(0.72) benign(0.022) TCGA-FR-A726-01 19 2989155 2989155 G A TLE6 Silent p.K279K 0.42 TCGA-FR-A726-01 19 2989197 2989197 C T TLE6 Silent p.A293A 0.28 TCGA-FR-A726-01 19 3054020 3054020 G A AES Nonsense_Mutation p.Q198* 0.20 TCGA-FR-A726-01 19 3054021 3054021 G T AES Missense_Mutation p.H197Q 0.20 tolerated_low_confidence(0.7) benign(0.191) TCGA-FR-A726-01 19 3113473 3113473 C T GNA11 Missense_Mutation p.S156F 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 31767497 31767497 G A TSHZ3 Missense_Mutation p.P1068S 0.30 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 31767880 31767880 C T TSHZ3 Missense_Mutation p.G940E 0.19 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 19 31769066 31769066 C T TSHZ3 Missense_Mutation p.G545R 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 3178808 3178808 C T S1PR4 Silent p.T6T 0.38 TCGA-FR-A726-01 19 33333123 33333123 C T SLC7A9 Missense_Mutation p.G392E 0.25 deleterious(0.02) possibly_damaging(0.785) TCGA-FR-A726-01 19 33333124 33333124 C T SLC7A9 Missense_Mutation p.G392R 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-FR-A726-01 19 33502701 33502701 C T RHPN2 Silent p.R159R 0.24 TCGA-FR-A726-01 19 33647326 33647326 C T WDR88 Missense_Mutation p.S292F 0.07 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 33698321 33698321 G A LRP3 Missense_Mutation p.R718Q 0.48 tolerated_low_confidence(0.15) benign(0) TCGA-FR-A726-01 19 33698322 33698322 G A LRP3 Silent p.R718R 0.50 TCGA-FR-A726-01 19 33703257 33703257 G A SLC7A10 Silent p.F243F 0.36 TCGA-FR-A726-01 19 34263702 34263702 C T CHST8 Missense_Mutation p.P337S 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 3462803 3462803 C T NFIC 3'UTR 0.32 TCGA-FR-A726-01 19 34951441 34951441 C T UBA2 Silent p.L490L 0.34 TCGA-FR-A726-01 19 35085424 35085424 G T SCGB2B2 Silent p.I15I 0.21 TCGA-FR-A726-01 19 35176241 35176241 C T ZNF302 3'UTR 0.29 TCGA-FR-A726-01 19 35251100 35251100 C T ZNF599 Silent p.T202T 0.23 TCGA-FR-A726-01 19 35422888 35422888 G A ZNF30 Missense_Mutation p.V51M 0.29 deleterious(0) benign(0.053) TCGA-FR-A726-01 19 35434961 35434961 G A ZNF30 Missense_Mutation p.R365Q 0.35 deleterious(0.02) benign(0.294) TCGA-FR-A726-01 19 35449035 35449035 G A ZNF792 Missense_Mutation p.P575L 0.40 deleterious(0.05) benign(0.055) TCGA-FR-A726-01 19 35449757 35449757 A T ZNF792 Silent p.G334G 0.35 TCGA-FR-A726-01 19 3573720 3573720 T A HMG20B Missense_Mutation p.H23Q 0.21 tolerated_low_confidence(0.11) unknown(0) TCGA-FR-A726-01 19 35775969 35775969 C T HAMP 3'UTR 0.12 TCGA-FR-A726-01 19 35832309 35832309 C T CD22 Missense_Mutation p.S524L 0.31 tolerated(0.11) benign(0.038) TCGA-FR-A726-01 19 35850389 35850389 C T FFAR3 Silent p.I199I 0.40 TCGA-FR-A726-01 19 36014315 36014315 G A SBSN 3'UTR 0.43 TCGA-FR-A726-01 19 36106232 36106232 C T HAUS5 Silent p.L143L 0.24 TCGA-FR-A726-01 19 36216629 36216629 C T KMT2B Silent p.L1265L 0.37 TCGA-FR-A726-01 19 36217199 36217199 C T KMT2B Silent p.V1316V 0.31 TCGA-FR-A726-01 19 36243354 36243354 G C LIN37 Missense_Mutation p.A44P 0.12 tolerated(0.4) possibly_damaging(0.55) TCGA-FR-A726-01 19 36271670 36271670 C T ARHGAP33 Missense_Mutation p.P261S 0.18 tolerated_low_confidence(0.16) benign(0.005) TCGA-FR-A726-01 19 36271671 36271671 C T ARHGAP33 Missense_Mutation p.P261L 0.18 tolerated_low_confidence(0.1) benign(0.005) TCGA-FR-A726-01 19 36279032 36279032 C T ARHGAP33 Missense_Mutation p.P1028S 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A726-01 19 36303627 36303627 C T PRODH2 Silent p.G103G 0.27 TCGA-FR-A726-01 19 36339034 36339034 G A NPHS1 Missense_Mutation p.P450L 0.34 deleterious(0.04) benign(0.35) TCGA-FR-A726-01 19 36351847 36351847 C T KIRREL2 Missense_Mutation p.S322F 0.32 tolerated(0.13) benign(0.064) TCGA-FR-A726-01 19 36435836 36435836 C G LRFN3 Missense_Mutation p.P601R 0.27 tolerated(0.13) benign(0.01) TCGA-FR-A726-01 19 36494256 36494256 C T SYNE4 Missense_Mutation p.G400S 0.43 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 19 36503943 36503943 C T ALKBH6 Missense_Mutation p.E63K 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 36640647 36640647 T G CAPNS1 Intron 0.41 TCGA-FR-A726-01 19 36727558 36727558 C T ZNF146 Silent p.F72F 0.35 TCGA-FR-A726-01 19 36940669 36940669 G A ZNF566 Missense_Mutation p.P157L 0.31 tolerated(0.08) probably_damaging(0.948) TCGA-FR-A726-01 19 37038298 37038298 G A ZNF529 Missense_Mutation p.H388Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 19 3728607 3728607 C T TJP3 Silent p.P27P 0.24 TCGA-FR-A726-01 19 37399357 37399357 G A ZNF829 Missense_Mutation p.P115L 0.29 tolerated(0.77) benign(0.085) TCGA-FR-A726-01 19 37399358 37399358 G A ZNF829 Missense_Mutation p.P115S 0.28 tolerated(0.48) benign(0.002) TCGA-FR-A726-01 19 37440716 37440716 C T ZNF568 Missense_Mutation p.P221S 0.19 tolerated(0.1) benign(0.006) TCGA-FR-A726-01 19 37488163 37488163 C T ZNF568 Nonsense_Mutation p.R460* 0.23 TCGA-FR-A726-01 19 3759748 3759748 G A APBA3 Missense_Mutation p.P172L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 19 3759749 3759749 G A APBA3 Missense_Mutation p.P172S 0.35 tolerated(0.11) probably_damaging(0.998) TCGA-FR-A726-01 19 37618337 37618337 C T ZNF420 Silent p.F148F 0.30 TCGA-FR-A726-01 19 37642693 37642693 G A ZNF585A Missense_Mutation p.S648L 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 19 37677397 37677397 G A ZNF585B Nonsense_Mutation p.Q348* 0.30 TCGA-FR-A726-01 19 37698106 37698106 G A ZNF585B 5'UTR 0.52 TCGA-FR-A726-01 19 37698107 37698107 G A ZNF585B 5'UTR 0.55 TCGA-FR-A726-01 19 3778243 3778243 G A MATK Missense_Mutation p.P489S 0.26 tolerated(0.7) benign(0.003) TCGA-FR-A726-01 19 37879205 37879205 C T ZNF527 Intron 0.30 TCGA-FR-A726-01 19 38103348 38103348 G A ZNF540 Silent p.G389G 0.34 TCGA-FR-A726-01 19 38189614 38189614 C T ZNF607 Missense_Mutation p.G473E 0.27 deleterious(0.02) probably_damaging(0.955) TCGA-FR-A726-01 19 38189615 38189615 C T ZNF607 Missense_Mutation p.G473R 0.27 deleterious(0.02) probably_damaging(0.967) TCGA-FR-A726-01 19 38230056 38230056 C T ZNF573 Silent p.K445K 0.29 TCGA-FR-A726-01 19 38230079 38230079 C T ZNF573 Missense_Mutation p.G438S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 19 38230841 38230841 G A ZNF573 Missense_Mutation p.H184Y 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-FR-A726-01 19 38262214 38262214 C T ZNF573 Silent p.L64L 0.25 TCGA-FR-A726-01 19 38621191 38621191 C T SIPA1L3 Silent p.L974L 0.34 TCGA-FR-A726-01 19 38673263 38673263 C T SIPA1L3 Missense_Mutation p.S1438F 0.26 deleterious(0) probably_damaging(0.943) TCGA-FR-A726-01 19 38817922 38817922 C T KCNK6 Missense_Mutation p.P274L 0.33 tolerated(0.28) benign(0.118) TCGA-FR-A726-01 19 38851475 38851475 G A CATSPERG Silent p.E624E 0.24 TCGA-FR-A726-01 19 38903309 38903309 C T RASGRP4 Intron 0.32 TCGA-FR-A726-01 19 38946161 38946161 G A RYR1 Silent p.K549K 0.39 TCGA-FR-A726-01 19 38948716 38948716 C T RYR1 Nonsense_Mutation p.R651* 0.29 TCGA-FR-A726-01 19 38957016 38957016 C T RYR1 Silent p.I1052I 0.33 TCGA-FR-A726-01 19 38959762 38959762 G A RYR1 Missense_Mutation p.E1180K 0.25 possibly_damaging(0.636) TCGA-FR-A726-01 19 38976479 38976479 C T RYR1 Silent p.S1728S 0.36 TCGA-FR-A726-01 19 39001171 39001171 C T RYR1 Missense_Mutation p.S2989F 0.28 benign(0.062) TCGA-FR-A726-01 19 39001172 39001172 C T RYR1 Silent p.S2989S 0.28 TCGA-FR-A726-01 19 39002915 39002915 G A RYR1 Silent p.V3088V 0.33 TCGA-FR-A726-01 19 39101896 39101896 C T MAP4K1 Missense_Mutation p.E239K 0.38 deleterious(0) possibly_damaging(0.591) TCGA-FR-A726-01 19 39292340 39292340 G A LGALS4 3'UTR 0.21 TCGA-FR-A726-01 19 39292341 39292341 G A LGALS4 3'UTR 0.24 TCGA-FR-A726-01 19 39299510 39299510 C T LGALS4 Nonsense_Mutation p.W71* 0.32 TCGA-FR-A726-01 19 39327233 39327233 G A HNRNPL 3'UTR 0.44 TCGA-FR-A726-01 19 39421381 39421381 G A SARS2 5'UTR 0.25 TCGA-FR-A726-01 19 39805302 39805302 G A LRFN1 Silent p.L225L 0.28 TCGA-FR-A726-01 19 39805458 39805458 G A LRFN1 Silent p.N173N 0.36 TCGA-FR-A726-01 19 39879590 39879590 A T PAF1 Missense_Mutation p.F211L 0.45 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 19 39966958 39966958 G A SUPT5H Silent p.E1061E 0.27 TCGA-FR-A726-01 19 39966959 39966959 G A SUPT5H Missense_Mutation p.D1062N 0.26 deleterious(0.03) benign(0.275) TCGA-FR-A726-01 19 39995876 39995876 C T DLL3 Missense_Mutation p.P293L 0.34 tolerated(0.44) benign(0.015) TCGA-FR-A726-01 19 40331144 40331144 G A FBL Missense_Mutation p.H65Y 0.10 tolerated(0.08) unknown(0) TCGA-FR-A726-01 19 40331145 40331145 G A FBL Silent p.F64F 0.11 TCGA-FR-A726-01 19 40354296 40354296 C T FCGBP Silent p.A5391A 0.31 TCGA-FR-A726-01 19 40357613 40357613 G A FCGBP Missense_Mutation p.L5234F 0.28 possibly_damaging(0.84) TCGA-FR-A726-01 19 40362835 40362835 C T FCGBP Missense_Mutation p.D5079N 0.28 probably_damaging(1) TCGA-FR-A726-01 19 40384054 40384054 C T FCGBP Missense_Mutation p.E3186K 0.11 possibly_damaging(0.621) TCGA-FR-A726-01 19 40430490 40430492 CGT TG FCGBP Frame_Shift_Del p.D484Afs*7 0.29 TCGA-FR-A726-01 19 40433355 40433355 A G FCGBP Missense_Mutation p.L305P 0.38 benign(0.141) TCGA-FR-A726-01 19 40521364 40521364 C G ZNF546 Silent p.T729T 0.35 TCGA-FR-A726-01 19 40540443 40540443 G A ZNF780B Missense_Mutation p.H775Y 0.36 deleterious(0.01) benign(0) TCGA-FR-A726-01 19 40580956 40580956 G A ZNF780A Nonsense_Mutation p.R466* 0.29 TCGA-FR-A726-01 19 40698446 40698446 C G MAP3K10 Missense_Mutation p.L170V 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 40711940 40711940 G A MAP3K10 Silent p.E437E 0.40 TCGA-FR-A726-01 19 40723159 40723159 T - TTC9B Frame_Shift_Del p.Y182Sfs*32 0.19 TCGA-FR-A726-01 19 40827876 40827876 C T C19orf47 Silent p.G394G 0.34 TCGA-FR-A726-01 19 40872703 40872703 C T PLD3 Silent p.V42V 0.30 TCGA-FR-A726-01 19 40895751 40895751 C T HIPK4 Missense_Mutation p.G20E 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 40900057 40900057 G A PRX Missense_Mutation p.S1401F 0.39 deleterious(0.04) benign(0.045) TCGA-FR-A726-01 19 40902864 40902864 G A PRX Silent p.L465L 0.28 TCGA-FR-A726-01 19 40903767 40903767 G A PRX Silent p.S164S 0.31 TCGA-FR-A726-01 19 40947342 40947342 G A SERTAD3 3'UTR 0.33 TCGA-FR-A726-01 19 40947343 40947343 G T SERTAD3 3'UTR 0.35 TCGA-FR-A726-01 19 41003506 41003506 C T SPTBN4 Missense_Mutation p.P260L 0.25 deleterious(0) benign(0.01) TCGA-FR-A726-01 19 41071420 41071420 G A SPTBN4 Missense_Mutation p.E2003K 0.35 deleterious(0.05) benign(0.18) TCGA-FR-A726-01 19 41455067 41455067 C T AC092071.1 3'Flank 0.31 TCGA-FR-A726-01 19 41630647 41630647 C T CYP2F1 Missense_Mutation p.L330F 0.33 deleterious(0.02) benign(0.167) TCGA-FR-A726-01 19 41703728 41703728 T A CYP2S1 Missense_Mutation p.F130I 0.34 deleterious(0) possibly_damaging(0.574) TCGA-FR-A726-01 19 41707266 41707266 C T CYP2S1 Missense_Mutation p.P322L 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A726-01 19 41932187 41932187 G A B3GNT8 Missense_Mutation p.A166V 0.32 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 42092921 42092921 C T CEACAM21 3'Flank 0.45 TCGA-FR-A726-01 19 42218994 42218994 C T CEACAM5 Silent p.L177L 0.27 TCGA-FR-A726-01 19 4224545 4224545 G A ANKRD24 3'UTR 0.45 TCGA-FR-A726-01 19 42259447 42259447 G A CEACAM6 5'UTR 0.34 TCGA-FR-A726-01 19 42300614 42300614 G A CEACAM3 Missense_Mutation p.G2E 0.29 tolerated(1) benign(0.109) TCGA-FR-A726-01 19 42314003 42314003 A T CEACAM3 Missense_Mutation p.R181S 0.32 deleterious(0.02) benign(0.032) TCGA-FR-A726-01 19 42342254 42342254 G A LYPD4 Missense_Mutation p.P98L 0.35 tolerated(0.76) possibly_damaging(0.566) TCGA-FR-A726-01 19 42343039 42343039 G A LYPD4 Missense_Mutation p.H43Y 0.08 tolerated(1) benign(0.003) TCGA-FR-A726-01 19 42352943 42352943 G A DMRTC2 Nonsense_Mutation p.W176* 0.33 TCGA-FR-A726-01 19 42392168 42392168 C T ARHGEF1 Silent p.A20A 0.41 TCGA-FR-A726-01 19 42490318 42490318 C T ATP1A3 Missense_Mutation p.E154K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 42546821 42546821 C T GRIK5 Silent p.R452R 0.30 TCGA-FR-A726-01 19 42563506 42563506 G A GRIK5 Missense_Mutation p.R228C 0.30 deleterious(0) possibly_damaging(0.736) TCGA-FR-A726-01 19 42584328 42584328 C T ZNF574 Missense_Mutation p.P524S 0.31 tolerated(0.65) benign(0.001) TCGA-FR-A726-01 19 42584329 42584329 C T ZNF574 Missense_Mutation p.P524L 0.31 tolerated(0.24) benign(0.046) TCGA-FR-A726-01 19 42752581 42752581 G C ERF 3'UTR 0.10 TCGA-FR-A726-01 19 42794640 42794640 C T CIC Missense_Mutation p.P574S 0.39 possibly_damaging(0.487) TCGA-FR-A726-01 19 42839490 42839490 A C MEGF8 Missense_Mutation p.N261H 0.30 deleterious(0.04) probably_damaging(0.982) TCGA-FR-A726-01 19 42862945 42862945 C T MEGF8 Missense_Mutation p.R1661C 0.32 tolerated_low_confidence(0.23) benign(0) TCGA-FR-A726-01 19 42867406 42867406 C T MEGF8 Silent p.L2022L 0.32 TCGA-FR-A726-01 19 4292882 4292882 C T TMIGD2 Missense_Mutation p.G188E 0.11 tolerated(0.27) probably_damaging(0.972) TCGA-FR-A726-01 19 43233439 43233439 G A PSG3 Missense_Mutation p.P360L 0.29 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 19 43257479 43257479 G A PSG8 3'Flank 0.33 TCGA-FR-A726-01 19 43262320 43262320 C T PSG8 Nonsense_Mutation p.W181* 0.34 TCGA-FR-A726-01 19 43371084 43371084 C T PSG1 3'Flank 0.44 TCGA-FR-A726-01 19 43371925 43371925 C T PSG1 3'UTR 0.32 TCGA-FR-A726-01 19 43372052 43372052 G A PSG1 3'UTR 0.34 TCGA-FR-A726-01 19 43372459 43372459 G A PSG1 Missense_Mutation p.S346L 0.33 tolerated(0.11) benign(0.041) TCGA-FR-A726-01 19 43373014 43373014 G A PSG1 Silent p.I294I 0.20 TCGA-FR-A726-01 19 43383790 43383790 C T PSG1 5'UTR 0.14 TCGA-FR-A726-01 19 43412005 43412005 C T PSG6 Silent p.P236P 0.37 TCGA-FR-A726-01 19 43428785 43428785 T C PSG7 3'UTR 0.18 TCGA-FR-A726-01 19 43428845 43428845 C T PSG7 3'UTR 0.17 TCGA-FR-A726-01 19 43428934 43428934 G A PSG7 3'UTR 0.17 TCGA-FR-A726-01 19 43430025 43430025 G A PSG7 Silent p.I381I 0.25 TCGA-FR-A726-01 19 434755 434755 G A SHC2 Missense_Mutation p.S355F 0.35 tolerated(0.1) possibly_damaging(0.707) TCGA-FR-A726-01 19 43523096 43523096 G A PSG11 Silent p.L179L 0.32 TCGA-FR-A726-01 19 43528859 43528859 G A PSG11 Silent p.F138F 0.27 TCGA-FR-A726-01 19 43579640 43579640 C T PSG2 Missense_Mutation p.R192K 0.34 tolerated(0.1) benign(0.072) TCGA-FR-A726-01 19 43585121 43585121 C T PSG2 Silent p.R114R 0.29 TCGA-FR-A726-01 19 436281 436281 G A SHC2 Silent p.I279I 0.46 TCGA-FR-A726-01 19 43674288 43674288 G A PSG5 Missense_Mutation p.P323S 0.42 tolerated(0.11) benign(0.01) TCGA-FR-A726-01 19 43679376 43679376 C T PSG5 Missense_Mutation p.E319K 0.30 tolerated(0.38) benign(0.004) TCGA-FR-A726-01 19 43683245 43683245 C T PSG5 Intron 0.33 TCGA-FR-A726-01 19 43698565 43698565 C T PSG4 Silent p.G390G 0.34 TCGA-FR-A726-01 19 43991260 43991260 G A PHLDB3 Nonsense_Mutation p.Q389* 0.21 TCGA-FR-A726-01 19 44129384 44129384 C T CADM4 Nonsense_Mutation p.W258* 0.39 TCGA-FR-A726-01 19 44222905 44222905 G A IRGC Silent p.A65A 0.37 TCGA-FR-A726-01 19 44223023 44223023 C T IRGC Missense_Mutation p.P105S 0.36 tolerated(0.06) benign(0.059) TCGA-FR-A726-01 19 4432178 4432178 C T CHAF1A Missense_Mutation p.S726F 0.37 deleterious(0) probably_damaging(0.961) TCGA-FR-A726-01 19 4432179 4432179 C T CHAF1A Silent p.S726S 0.37 TCGA-FR-A726-01 19 44352321 44352321 C T ZNF283 Missense_Mutation p.A523V 0.30 tolerated(0.05) benign(0.272) TCGA-FR-A726-01 19 44376720 44376720 C T ZNF404 Missense_Mutation p.R549K 0.29 tolerated(1) benign(0.001) TCGA-FR-A726-01 19 44466906 44466906 C T ZNF221 Missense_Mutation p.H10Y 0.35 tolerated_low_confidence(0.27) benign(0.403) TCGA-FR-A726-01 19 44500806 44500806 G A ZNF155 Missense_Mutation p.G277E 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 44516619 44516619 C G ZNF230 3'UTR 0.25 TCGA-FR-A726-01 19 44536578 44536578 C T ZNF222 Missense_Mutation p.H291Y 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 19 44536787 44536787 G A ZNF222 Silent p.K360K 0.07 TCGA-FR-A726-01 19 44661832 44661832 C T ZNF234 Missense_Mutation p.L555F 0.34 tolerated(0.06) probably_damaging(0.991) TCGA-FR-A726-01 19 44680000 44680000 A C ZNF226 Missense_Mutation p.K195N 0.45 tolerated(0.66) benign(0.013) TCGA-FR-A726-01 19 44681054 44681054 C T ZNF226 Nonsense_Mutation p.Q547* 0.29 TCGA-FR-A726-01 19 44891610 44891610 C T ZNF285 Missense_Mutation p.G266E 0.30 tolerated(0.06) benign(0.012) TCGA-FR-A726-01 19 44892043 44892043 C T ZNF285 Missense_Mutation p.E122K 0.36 tolerated(0.09) benign(0.033) TCGA-FR-A726-01 19 44933278 44933278 G A ZNF229 Missense_Mutation p.H560Y 0.33 deleterious(0) possibly_damaging(0.618) TCGA-FR-A726-01 19 44933871 44933871 G A ZNF229 Missense_Mutation p.S362L 0.30 tolerated(0.09) benign(0.007) TCGA-FR-A726-01 19 44934127 44934127 C T ZNF229 Missense_Mutation p.D277N 0.33 tolerated(0.53) benign(0.001) TCGA-FR-A726-01 19 44934399 44934399 C T ZNF229 Missense_Mutation p.G186E 0.30 tolerated(0.75) benign(0) TCGA-FR-A726-01 19 44934572 44934572 T A ZNF229 Silent p.G128G 0.07 TCGA-FR-A726-01 19 44946768 44946768 C T ZNF229 Silent p.R24R 0.34 TCGA-FR-A726-01 19 4513441 4513441 C T PLIN4 Silent p.T163T 0.31 TCGA-FR-A726-01 19 45317897 45317897 G A BCAM Missense_Mutation p.G320R 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 45317898 45317898 G A BCAM Missense_Mutation p.G320E 0.29 deleterious(0.04) probably_damaging(0.971) TCGA-FR-A726-01 19 45322619 45322619 C T BCAM Missense_Mutation p.P497L 0.25 tolerated(0.28) benign(0.022) TCGA-FR-A726-01 19 45377598 45377598 C T PVRL2 Missense_Mutation p.T302I 0.24 tolerated(0.37) benign(0.008) TCGA-FR-A726-01 19 45404286 45404286 G A TOMM40 Silent p.L256L 0.08 TCGA-FR-A726-01 19 45406309 45406309 C T TOMM40 Silent p.I323I 0.41 TCGA-FR-A726-01 19 4546239 4546239 C T SEMA6B Missense_Mutation p.G576E 0.30 tolerated(0.06) possibly_damaging(0.643) TCGA-FR-A726-01 19 45515524 45515524 C T RELB Missense_Mutation p.P165L 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 45682563 45682563 C T BLOC1S3 Silent p.S3S 0.41 TCGA-FR-A726-01 19 46185076 46185076 C T GIPR Silent p.F428F 0.22 TCGA-FR-A726-01 19 46195224 46195224 C T SNRPD2 5'UTR 0.06 TCGA-FR-A726-01 19 46206238 46206238 C T QPCTL Silent p.L360L 0.38 TCGA-FR-A726-01 19 46287538 46287538 G A DMWD Missense_Mutation p.S663F 0.35 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-FR-A726-01 19 46444045 46444045 C T NOVA2 Silent p.E185E 0.48 TCGA-FR-A726-01 19 46511530 46511530 G A CCDC61 Silent p.R174R 0.43 TCGA-FR-A726-01 19 46664012 46664012 T G IGFL2 Missense_Mutation p.F83C 0.07 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 19 46834482 46834482 G A HIF3A Silent p.R594R 0.42 TCGA-FR-A726-01 19 46891968 46891968 C T PPP5C Silent p.V445V 0.34 TCGA-FR-A726-01 19 46998487 46998487 G A PNMAL2 Missense_Mutation p.P79L 0.36 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 46998733 46998733 C T PNMAL2 5'UTR 0.22 TCGA-FR-A726-01 19 47111767 47111767 C T CALM3 Silent p.F69F 0.06 TCGA-FR-A726-01 19 47111768 47111768 C T CALM3 Silent p.L70L 0.06 TCGA-FR-A726-01 19 47124833 47124833 G A PTGIR Missense_Mutation p.P289S 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 47192800 47192800 G A PRKD2 Silent p.I655I 0.35 TCGA-FR-A726-01 19 47201090 47201090 G A PRKD2 Missense_Mutation p.P380L 0.31 deleterious(0) possibly_damaging(0.861) TCGA-FR-A726-01 19 47341613 47341613 G A AP2S1 3'UTR 0.32 TCGA-FR-A726-01 19 47423977 47423977 G A ARHGAP35 Missense_Mutation p.R682K 0.29 tolerated(0.56) benign(0.056) TCGA-FR-A726-01 19 47503635 47503635 C T ARHGAP35 Missense_Mutation p.S1397F 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 47575811 47575811 C T ZC3H4 Missense_Mutation p.G534S 0.25 unknown(0) TCGA-FR-A726-01 19 47673173 47673173 C T SAE1 Silent p.L242L 0.44 TCGA-FR-A726-01 19 47912431 47912431 C T MEIS3 Silent p.R261R 0.43 TCGA-FR-A726-01 19 47912793 47912793 C T MEIS3 Nonsense_Mutation p.W203* 0.19 TCGA-FR-A726-01 19 47969346 47969346 C T SLC8A2 Silent p.K105K 0.06 TCGA-FR-A726-01 19 47980154 47980154 G A KPTN Missense_Mutation p.P302L 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-FR-A726-01 19 48198255 48198255 T G GLTSCR1 Silent p.S998S 0.33 TCGA-FR-A726-01 19 48204603 48204603 C T GLTSCR1 Missense_Mutation p.S1205F 0.30 probably_damaging(0.987) TCGA-FR-A726-01 19 48306081 48306081 G A TPRX1 Missense_Mutation p.L63F 0.31 tolerated_low_confidence(0.17) unknown(0) TCGA-FR-A726-01 19 48306082 48306082 G A TPRX1 Silent p.I62I 0.30 TCGA-FR-A726-01 19 48543880 48543880 G A CABP5 Nonsense_Mutation p.Q74* 0.31 TCGA-FR-A726-01 19 48801592 48801592 G A CCDC114 Nonsense_Mutation p.Q379* 0.22 TCGA-FR-A726-01 19 48805954 48805954 C T CCDC114 Missense_Mutation p.A376T 0.38 tolerated(0.32) benign(0.012) TCGA-FR-A726-01 19 48805955 48805955 C T CCDC114 Silent p.K375K 0.38 TCGA-FR-A726-01 19 48908279 48908279 G A GRIN2D Missense_Mutation p.E252K 0.34 deleterious(0.01) possibly_damaging(0.883) TCGA-FR-A726-01 19 49090650 49090650 C T SULT2B1 Missense_Mutation p.P127S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 19 49142303 49142303 G A CA11 Missense_Mutation p.S268F 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-FR-A726-01 19 49143498 49143498 A T CA11 Missense_Mutation p.F109I 0.24 deleterious(0.01) benign(0.096) TCGA-FR-A726-01 19 49147777 49147777 C T CA11 Silent p.V64V 0.44 TCGA-FR-A726-01 19 49183664 49183664 G A RN7SL345P 5'Flank 0.30 TCGA-FR-A726-01 19 49247724 49247724 C T IZUMO1 Missense_Mutation p.R128Q 0.28 tolerated(1) benign(0.023) TCGA-FR-A726-01 19 49351192 49351192 G A PLEKHA4 Missense_Mutation p.P511S 0.30 tolerated(0.12) benign(0.064) TCGA-FR-A726-01 19 49507665 49507665 C T RUVBL2 Silent p.A85A 0.28 TCGA-FR-A726-01 19 49552187 49552187 C T CGB8 5'UTR 0.27 TCGA-FR-A726-01 19 49558630 49558630 C T CGB7 Translation_Start_Site p.M1? 0.30 tolerated(0.09) possibly_damaging(0.491) TCGA-FR-A726-01 19 49633831 49633831 C T PPFIA3 Missense_Mutation p.S285F 0.30 deleterious(0.01) benign(0.014) TCGA-FR-A726-01 19 49640086 49640086 C T PPFIA3 Silent p.L591L 0.53 TCGA-FR-A726-01 19 49656977 49656977 C T HRC Silent p.E506E 0.29 TCGA-FR-A726-01 19 49684710 49684710 C T TRPM4 Nonsense_Mutation p.Q419* 0.12 TCGA-FR-A726-01 19 49812277 49812277 G A SLC6A16 Missense_Mutation p.S362F 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 49913031 49913031 G T CCDC155 Missense_Mutation p.D390Y 0.23 tolerated(0.08) benign(0.003) TCGA-FR-A726-01 19 49938539 49938539 G A SLC17A7 Missense_Mutation p.A107V 0.31 tolerated(0.14) benign(0.314) TCGA-FR-A726-01 19 50099516 50099516 C T PRR12 Missense_Mutation p.L642F 0.31 possibly_damaging(0.765) TCGA-FR-A726-01 19 50099984 50099984 C T PRR12 Missense_Mutation p.P798S 0.32 possibly_damaging(0.803) TCGA-FR-A726-01 19 50249852 50249852 G A TSKS Silent p.P289P 0.32 TCGA-FR-A726-01 19 50306587 50306587 C T AP2A1 Silent p.F788F 0.25 TCGA-FR-A726-01 19 50333391 50333391 C G MED25 Silent p.V245V 0.33 TCGA-FR-A726-01 19 50340224 50340224 C T MED25 3'UTR 0.48 TCGA-FR-A726-01 19 50367263 50367263 G A PNKP Silent p.A234A 0.28 TCGA-FR-A726-01 19 50385653 50385653 C T TBC1D17 Missense_Mutation p.S265F 0.31 deleterious(0) benign(0.128) TCGA-FR-A726-01 19 50435924 50435924 C T ATF5 Missense_Mutation p.P142S 0.54 tolerated(0.4) benign(0.008) TCGA-FR-A726-01 19 50463947 50463947 C T SIGLEC11 Missense_Mutation p.D108N 0.20 tolerated(0.24) benign(0.216) TCGA-FR-A726-01 19 50713684 50713684 C T MYH14 Missense_Mutation p.P21L 0.47 tolerated_low_confidence(0.24) benign(0.279) TCGA-FR-A726-01 19 50764809 50764809 C T MYH14 Silent p.A834A 0.53 TCGA-FR-A726-01 19 50812399 50812399 G A MYH14 Missense_Mutation p.M1975I 0.27 tolerated(0.09) benign(0.143) TCGA-FR-A726-01 19 50827261 50827261 G A KCNC3 Missense_Mutation p.H317Y 0.28 tolerated(1) possibly_damaging(0.579) TCGA-FR-A726-01 19 50837629 50837629 G A KCNC3 5'Flank 0.21 TCGA-FR-A726-01 19 50838102 50838102 G A NAPSB RNA 0.48 TCGA-FR-A726-01 19 50905628 50905628 C T POLD1 Silent p.I252I 0.33 TCGA-FR-A726-01 19 50944196 50944196 C T MYBPC2 Missense_Mutation p.P211L 0.31 deleterious(0) possibly_damaging(0.881) TCGA-FR-A726-01 19 51013604 51013604 G A JOSD2 Missense_Mutation p.L29F 0.31 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 19 51022372 51022372 C T LRRC4B Missense_Mutation p.E200K 0.31 tolerated(0.2) benign(0.081) TCGA-FR-A726-01 19 51022373 51022373 C T LRRC4B Silent p.S199S 0.32 TCGA-FR-A726-01 19 51169908 51169908 G A SHANK1 Missense_Mutation p.P1770L 0.44 unknown(0) TCGA-FR-A726-01 19 51301460 51301460 G A C19orf48 Silent p.S82S 0.34 TCGA-FR-A726-01 19 51358196 51358196 G A KLK3 5'UTR 0.34 TCGA-FR-A726-01 19 51358197 51358197 G A KLK3 5'UTR 0.33 TCGA-FR-A726-01 19 51363394 51363394 C T KLK3 3'UTR 0.36 TCGA-FR-A726-01 19 51377986 51377986 C T KLK2 Missense_Mutation p.P19L 0.37 deleterious(0.01) benign(0.421) TCGA-FR-A726-01 19 51381880 51381880 C T KLK2 3'UTR 0.09 TCGA-FR-A726-01 19 51466732 51466732 G A KLK6 Missense_Mutation p.R91W 0.08 deleterious(0) possibly_damaging(0.87) TCGA-FR-A726-01 19 51471451 51471451 C T KLK6 Intron 0.27 TCGA-FR-A726-01 19 51499467 51499467 C T KLK8 Missense_Mutation p.D256N 0.27 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 19 51503860 51503860 T C KLK8 Missense_Mutation p.N62S 0.35 tolerated(0.57) benign(0.039) TCGA-FR-A726-01 19 51645678 51645678 G A SIGLEC7 Missense_Mutation p.G18R 0.28 deleterious(0) probably_damaging(0.934) TCGA-FR-A726-01 19 51645948 51645948 C T SIGLEC7 Silent p.L108L 0.27 TCGA-FR-A726-01 19 51670806 51670806 C T CTD-3187F8.14 Intron 0.24 TCGA-FR-A726-01 19 51728732 51728732 A G CD33 Missense_Mutation p.N99S 0.28 tolerated(0.65) benign(0.326) TCGA-FR-A726-01 19 51728743 51728743 C T CD33 Silent p.L103L 0.29 TCGA-FR-A726-01 19 51729593 51729593 C T CD33 Silent p.I242I 0.38 TCGA-FR-A726-01 19 51742979 51742979 C T CD33 3'UTR 0.36 TCGA-FR-A726-01 19 51768682 51768682 C T SIGLECL1 Missense_Mutation p.S28F 0.32 deleterious(0) possibly_damaging(0.877) TCGA-FR-A726-01 19 51771944 51771944 C T SIGLECL1 3'UTR 0.24 TCGA-FR-A726-01 19 519020 519020 C T TPGS1 Missense_Mutation p.P157L 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 519021 519021 C T TPGS1 Silent p.P157P 0.32 TCGA-FR-A726-01 19 51917721 51917721 C T SIGLEC10 Missense_Mutation p.G555E 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 51919354 51919354 G A SIGLEC10 Silent p.L274L 0.29 TCGA-FR-A726-01 19 51919959 51919959 C T SIGLEC10 Missense_Mutation p.G223S 0.17 deleterious(0.05) possibly_damaging(0.859) TCGA-FR-A726-01 19 51919960 51919960 C T SIGLEC10 Silent p.K222K 0.17 TCGA-FR-A726-01 19 51920864 51920864 G A SIGLEC10 5'UTR 0.34 TCGA-FR-A726-01 19 52032988 52032988 G A SIGLEC6 Silent p.L334L 0.18 TCGA-FR-A726-01 19 52033958 52033958 C T SIGLEC6 Missense_Mutation p.R228K 0.26 tolerated(0.18) benign(0.068) TCGA-FR-A726-01 19 52034618 52034618 G A SIGLEC6 Missense_Mutation p.P75S 0.33 tolerated(0.07) probably_damaging(0.963) TCGA-FR-A726-01 19 52090690 52090690 G A ZNF175 Missense_Mutation p.G369E 0.31 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 19 52130843 52130843 G A SIGLEC5 Missense_Mutation p.S385F 0.35 deleterious(0.02) benign(0.377) TCGA-FR-A726-01 19 52219574 52219574 G A HAS1 Silent p.T332T 0.25 TCGA-FR-A726-01 19 52219632 52219632 C T HAS1 Missense_Mutation p.R313K 0.37 tolerated(0.08) benign(0.391) TCGA-FR-A726-01 19 5223145 5223145 G A PTPRS Silent p.S886S 0.32 TCGA-FR-A726-01 19 5223146 5223146 G A PTPRS Missense_Mutation p.S886F 0.33 deleterious(0.03) benign(0.098) TCGA-FR-A726-01 19 52249898 52249898 G A FPR1 Missense_Mutation p.A117V 0.21 tolerated(0.07) benign(0.078) TCGA-FR-A726-01 19 52327782 52327782 G A FPR3 Missense_Mutation p.G261S 0.25 tolerated(0.33) benign(0.038) TCGA-FR-A726-01 19 52380537 52380537 G A ZNF577 Missense_Mutation p.P94L 0.33 tolerated(0.46) benign(0.001) TCGA-FR-A726-01 19 52394543 52394543 C T ZNF649 Silent p.R282R 0.11 TCGA-FR-A726-01 19 52448956 52448956 C T ZNF613 Missense_Mutation p.S607L 0.37 tolerated(0.05) benign(0.014) TCGA-FR-A726-01 19 52570841 52570841 G A ZNF841 Silent p.I98I 0.30 TCGA-FR-A726-01 19 52660057 52660057 C T ZNF836 Silent p.R293R 0.29 TCGA-FR-A726-01 19 52660058 52660058 C T ZNF836 Missense_Mutation p.R293Q 0.30 tolerated(1) benign(0.002) TCGA-FR-A726-01 19 52729378 52729378 C T PPP2R1A 3'UTR 0.22 TCGA-FR-A726-01 19 52785130 52785130 A G ZNF766 Intron 0.45 TCGA-FR-A726-01 19 52785131 52785131 G A ZNF766 Intron 0.45 TCGA-FR-A726-01 19 52825018 52825018 C T ZNF480 Missense_Mutation p.S172F 0.20 tolerated(0.09) benign(0.012) TCGA-FR-A726-01 19 52905273 52905273 C T ZNF528 Missense_Mutation p.L3F 0.38 tolerated(0.08) benign(0.06) TCGA-FR-A726-01 19 52919890 52919890 C T ZNF528 Silent p.H595H 0.24 TCGA-FR-A726-01 19 52941764 52941764 G A ZNF534 Missense_Mutation p.E364K 0.24 deleterious(0.04) possibly_damaging(0.489) TCGA-FR-A726-01 19 53138343 53138343 C A ZNF83 5'UTR 0.22 TCGA-FR-A726-01 19 53303381 53303381 G A ZNF28 Missense_Mutation p.H573Y 0.29 deleterious(0) benign(0.182) TCGA-FR-A726-01 19 53311261 53311261 C T ZNF28 Silent p.L47L 0.06 TCGA-FR-A726-01 19 53572226 53572226 G A ZNF160 Missense_Mutation p.R521C 0.28 tolerated(0.23) probably_damaging(0.954) TCGA-FR-A726-01 19 53669525 53669525 A C ZNF665 Missense_Mutation p.V73G 0.39 tolerated(0.62) possibly_damaging(0.804) TCGA-FR-A726-01 19 53740186 53740186 C T ZNF677 3'UTR 0.15 TCGA-FR-A726-01 19 53762535 53762535 C T VN1R2 Missense_Mutation p.L303F 0.36 tolerated(0.1) benign(0.276) TCGA-FR-A726-01 19 53793021 53793021 G A BIRC8 Missense_Mutation p.P203S 0.37 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 19 53794488 53794488 G A BIRC8 5'UTR 0.40 TCGA-FR-A726-01 19 53889556 53889556 C T ZNF525 3'Flank 0.10 TCGA-FR-A726-01 19 53905374 53905374 C T ZNF765 Silent p.C24C 0.09 TCGA-FR-A726-01 19 53905375 53905375 C T ZNF765 Silent p.L25L 0.08 TCGA-FR-A726-01 19 53912230 53912230 C T ZNF765 Silent p.T474T 0.29 TCGA-FR-A726-01 19 54074905 54074905 G T ZNF331 Missense_Mutation p.E19D 0.34 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A726-01 19 54074907 54074907 G T ZNF331 Missense_Mutation p.W20L 0.35 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 19 54225508 54225508 G A MIR520G RNA 0.37 TCGA-FR-A726-01 19 54255701 54255701 G A MIR519A1 RNA 0.33 TCGA-FR-A726-01 19 54327159 54327159 C T NLRP12 Silent p.Q90Q 0.30 TCGA-FR-A726-01 19 54327541 54327541 G A NLRP12 5'UTR 0.42 TCGA-FR-A726-01 19 54385719 54385719 G A PRKCG 5'UTR 0.38 TCGA-FR-A726-01 19 54395855 54395855 C T PRKCG Missense_Mutation p.S260F 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-FR-A726-01 19 54395856 54395856 C T PRKCG Silent p.S260S 0.24 TCGA-FR-A726-01 19 54410182 54410182 C G PRKCG 3'UTR 0.35 TCGA-FR-A726-01 19 54417759 54417759 G A CACNG7 Missense_Mutation p.E68K 0.30 tolerated(0.7) benign(0.011) TCGA-FR-A726-01 19 54554671 54554671 C T VSTM1 Missense_Mutation p.M129I 0.32 tolerated(0.33) benign(0.002) TCGA-FR-A726-01 19 5455879 5455879 C T ZNRF4 Missense_Mutation p.P126L 0.23 tolerated(0.06) benign(0.035) TCGA-FR-A726-01 19 54567177 54567177 C T VSTM1 5'UTR 0.35 TCGA-FR-A726-01 19 54618751 54618751 G A TFPT 5'UTR 0.20 TCGA-FR-A726-01 19 54745968 54745968 G A LILRA6 Missense_Mutation p.R97C 0.43 tolerated(0.08) possibly_damaging(0.509) TCGA-FR-A726-01 19 54756238 54756238 C T LILRB5 Missense_Mutation p.E523K 0.32 deleterious(0) benign(0.373) TCGA-FR-A726-01 19 54759220 54759220 C T LILRB5 Missense_Mutation p.R294K 0.37 deleterious(0.03) possibly_damaging(0.68) TCGA-FR-A726-01 19 54782124 54782124 G A LILRB2 Silent p.L416L 0.25 TCGA-FR-A726-01 19 54782782 54782782 G A LILRB2 Silent p.N280N 0.08 TCGA-FR-A726-01 19 54783884 54783884 G A LILRB2 Silent p.I39I 0.31 TCGA-FR-A726-01 19 55086317 55086317 G A LILRA2 Missense_Mutation p.G158R 0.29 deleterious(0.01) possibly_damaging(0.61) TCGA-FR-A726-01 19 55112239 55112239 G A LILRA1 Missense_Mutation p.G476E 0.23 deleterious(0) possibly_damaging(0.891) TCGA-FR-A726-01 19 55112326 55112326 C T LILRA1 3'UTR 0.32 TCGA-FR-A726-01 19 55142736 55142736 C T LILRB1 Missense_Mutation p.P17S 0.31 tolerated(0.49) benign(0.065) TCGA-FR-A726-01 19 55144036 55144036 G A LILRB1 Silent p.G261G 0.32 TCGA-FR-A726-01 19 55146556 55146556 C T LILRB1 Silent p.T496T 0.37 TCGA-FR-A726-01 19 55175691 55175691 G A LILRB4 Missense_Mutation p.G137E 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 19 55176600 55176600 C T LILRB4 Silent p.P242P 0.30 TCGA-FR-A726-01 19 55221461 55221461 G A AC098784.2 3'Flank 0.42 TCGA-FR-A726-01 19 55224609 55224609 C T LILRP2 RNA 0.27 TCGA-FR-A726-01 19 55253677 55253677 C T KIR2DL3 Missense_Mutation p.P108S 0.26 tolerated(0.11) probably_damaging(0.997) TCGA-FR-A726-01 19 55263188 55263188 G A KIR2DL3 Nonsense_Mutation p.W268* 0.34 TCGA-FR-A726-01 19 55263189 55263189 G A KIR2DL3 Nonsense_Mutation p.W268* 0.33 TCGA-FR-A726-01 19 55285060 55285060 G A KIR2DL1 Missense_Mutation p.D116N 0.33 tolerated(0.13) probably_damaging(0.966) TCGA-FR-A726-01 19 55299899 55299899 C T KIR2DL1 3'Flank 0.23 TCGA-FR-A726-01 19 55299900 55299900 C T KIR2DL1 3'Flank 0.22 TCGA-FR-A726-01 19 55299901 55299901 C T KIR2DL1 3'Flank 0.22 TCGA-FR-A726-01 19 55401079 55401079 C T FCAR Silent p.L238L 0.34 TCGA-FR-A726-01 19 55421422 55421422 C T NCR1 Missense_Mutation p.P227S 0.32 tolerated(1) benign(0.002) TCGA-FR-A726-01 19 55439017 55439017 G A NLRP7 Silent p.L979L 0.24 TCGA-FR-A726-01 19 55451385 55451385 C T NLRP7 Missense_Mutation p.D268N 0.39 deleterious(0) possibly_damaging(0.745) TCGA-FR-A726-01 19 55493621 55493621 G A NLRP2 Missense_Mutation p.M185I 0.28 tolerated(0.29) benign(0.001) TCGA-FR-A726-01 19 55493985 55493985 G A NLRP2 Missense_Mutation p.D307N 0.25 tolerated(0.06) possibly_damaging(0.766) TCGA-FR-A726-01 19 55497631 55497631 C T NLRP2 Missense_Mutation p.P772S 0.25 tolerated(0.46) probably_damaging(0.959) TCGA-FR-A726-01 19 55708490 55708490 G A PTPRH Missense_Mutation p.S662F 0.24 probably_damaging(0.982) TCGA-FR-A726-01 19 55718268 55718268 G A PTPRH Silent p.S47S 0.35 TCGA-FR-A726-01 19 55756762 55756762 G A PPP6R1 Silent p.S141S 0.27 TCGA-FR-A726-01 19 55815942 55815942 G A BRSK1 Silent p.P457P 0.38 TCGA-FR-A726-01 19 55832339 55832339 G A TMEM150B Silent p.I22I 0.31 TCGA-FR-A726-01 19 56203374 56203374 C T EPN1 Silent p.A425A 0.26 TCGA-FR-A726-01 19 56203375 56203375 C T EPN1 Missense_Mutation p.P426S 0.26 tolerated(0.17) possibly_damaging(0.889) TCGA-FR-A726-01 19 56243531 56243531 C T NLRP9 Missense_Mutation p.E556K 0.24 tolerated(0.33) possibly_damaging(0.451) TCGA-FR-A726-01 19 56244186 56244186 G A NLRP9 Silent p.P337P 0.28 TCGA-FR-A726-01 19 56244187 56244187 G A NLRP9 Missense_Mutation p.P337L 0.28 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 19 56300336 56300336 C T NLRP11 Missense_Mutation p.E898K 0.29 tolerated(0.43) benign(0.343) TCGA-FR-A726-01 19 56307504 56307504 C T NLRP11 Missense_Mutation p.G762R 0.35 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 19 56370573 56370573 C T NLRP4 Missense_Mutation p.S605F 0.31 deleterious(0) probably_damaging(0.957) TCGA-FR-A726-01 19 56436372 56436372 G A NLRP13 Missense_Mutation p.P117S 0.31 tolerated(0.5) benign(0.02) TCGA-FR-A726-01 19 56466228 56466228 G A NLRP8 Silent p.Q268Q 0.37 TCGA-FR-A726-01 19 56485051 56485051 T G NLRP8 Missense_Mutation p.C856W 0.31 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 19 5653171 5653171 C T SAFB Missense_Mutation p.R447C 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 56544077 56544077 C T NLRP5 Silent p.L793L 0.09 TCGA-FR-A726-01 19 56600430 56600430 G A ZNF787 Silent p.V37V 0.40 TCGA-FR-A726-01 19 56704233 56704233 C T ZSCAN5B Silent p.R63R 0.69 TCGA-FR-A726-01 19 56733256 56733256 G A ZSCAN5A Silent p.F393F 0.29 TCGA-FR-A726-01 19 56733577 56733577 C T ZSCAN5A Silent p.G286G 0.26 TCGA-FR-A726-01 19 5680544 5680544 C T C19orf70 5'UTR 0.30 TCGA-FR-A726-01 19 56888977 56888977 G A AC006116.24 5'Flank 0.36 TCGA-FR-A726-01 19 56969549 56969549 C T ZNF667 Silent p.E76E 0.34 TCGA-FR-A726-01 19 56969561 56969561 G A ZNF667 Silent p.P72P 0.37 TCGA-FR-A726-01 19 56972063 56972063 G A ZNF667 Missense_Mutation p.S52L 0.34 deleterious(0.03) benign(0.267) TCGA-FR-A726-01 19 57089304 57089304 C T ZNF470 Missense_Mutation p.H503Y 0.28 deleterious(0) probably_damaging(0.976) TCGA-FR-A726-01 19 57175356 57175356 G A ZNF835 Missense_Mutation p.S404L 0.34 tolerated(0.38) probably_damaging(0.918) TCGA-FR-A726-01 19 57176520 57176520 C T ZNF835 Missense_Mutation p.G16E 0.39 tolerated(1) benign(0) TCGA-FR-A726-01 19 57286790 57286790 C T ZIM2 Missense_Mutation p.G284S 0.26 tolerated(0.51) benign(0.027) TCGA-FR-A726-01 19 57325031 57325031 T C PEG3 3'UTR 0.18 TCGA-FR-A726-01 19 57325180 57325180 C T PEG3 Missense_Mutation p.G1544S 0.36 tolerated(0.56) possibly_damaging(0.451) TCGA-FR-A726-01 19 57325393 57325393 C T PEG3 Missense_Mutation p.E1473K 0.35 deleterious(0.01) possibly_damaging(0.577) TCGA-FR-A726-01 19 57328102 57328102 C T PEG3 Missense_Mutation p.E570K 0.35 deleterious(0.03) benign(0) TCGA-FR-A726-01 19 57328195 57328195 C T PEG3 Missense_Mutation p.E539K 0.34 deleterious(0.02) benign(0.184) TCGA-FR-A726-01 19 57328861 57328861 T G PEG3 Missense_Mutation p.K317Q 0.25 deleterious(0) probably_damaging(0.94) TCGA-FR-A726-01 19 5745973 5745973 C T CATSPERD Missense_Mutation p.S236F 0.31 tolerated(0.06) possibly_damaging(0.878) TCGA-FR-A726-01 19 57640038 57640038 G A USP29 5'UTR 0.29 TCGA-FR-A726-01 19 57641733 57641733 G A USP29 Missense_Mutation p.E564K 0.32 tolerated(1) benign(0.002) TCGA-FR-A726-01 19 57642949 57642949 G A USP29 3'UTR 0.31 TCGA-FR-A726-01 19 57648291 57648291 C T ZIM3 Missense_Mutation p.G64E 0.31 tolerated(0.65) probably_damaging(0.998) TCGA-FR-A726-01 19 5776305 5776305 C T CATSPERD Missense_Mutation p.S692L 0.30 deleterious(0.02) possibly_damaging(0.885) TCGA-FR-A726-01 19 5787325 5787325 G A DUS3L Silent p.I420I 0.35 TCGA-FR-A726-01 19 57910998 57910998 C T ZNF548 Missense_Mutation p.P460L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 19 57988809 57988809 G A ZNF772 5'UTR 0.21 TCGA-FR-A726-01 19 58018662 58018662 C T ZNF773 Missense_Mutation p.S400F 0.25 tolerated(0.21) benign(0.037) TCGA-FR-A726-01 19 58084706 58084706 G A ZNF416 Missense_Mutation p.P189L 0.36 tolerated(0.32) benign(0.342) TCGA-FR-A726-01 19 58118474 58118474 C T ZNF530 Silent p.S527S 0.33 TCGA-FR-A726-01 19 58146118 58146118 C T ZNF211 Missense_Mutation p.S84F 0.30 deleterious(0) possibly_damaging(0.885) TCGA-FR-A726-01 19 58189789 58189789 G A ZSCAN4 Missense_Mutation p.G273E 0.29 tolerated(0.29) benign(0.184) TCGA-FR-A726-01 19 58265460 58265460 A T ZNF776 Missense_Mutation p.E321V 0.28 deleterious(0.05) probably_damaging(0.985) TCGA-FR-A726-01 19 58350474 58350474 C T ZNF587B Silent p.Y40Y 0.30 TCGA-FR-A726-01 19 58384156 58384156 C T ZNF814 3'UTR 0.26 TCGA-FR-A726-01 19 58420902 58420902 G A ZNF417 Silent p.S248S 0.25 TCGA-FR-A726-01 19 58445210 58445210 C T ZNF418 5'UTR 0.28 TCGA-FR-A726-01 19 58455307 58455307 G A ZNF256 Missense_Mutation p.S52F 0.31 deleterious(0) probably_damaging(0.942) TCGA-FR-A726-01 19 58490437 58490437 C T ZNF606 Silent p.E537E 0.07 TCGA-FR-A726-01 19 58596195 58596195 C T ZSCAN18 Missense_Mutation p.E520K 0.70 deleterious(0.04) benign(0.049) TCGA-FR-A726-01 19 58601563 58601563 C T ZSCAN18 Silent p.G80G 0.36 TCGA-FR-A726-01 19 58601746 58601746 C T ZSCAN18 Nonsense_Mutation p.W19* 0.33 TCGA-FR-A726-01 19 5867104 5867104 G A FUT5 Silent p.S211S 0.27 TCGA-FR-A726-01 19 58724447 58724447 C T ZNF274 Missense_Mutation p.L633F 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A726-01 19 58982673 58982673 C T ZNF324 Missense_Mutation p.L272F 0.26 tolerated(0.08) probably_damaging(0.997) TCGA-FR-A726-01 19 59009927 59009927 C T SLC27A5 Silent p.T676T 0.23 TCGA-FR-A726-01 19 59059912 59059912 C T TRIM28 Missense_Mutation p.P426S 0.23 deleterious_low_confidence(0.03) benign(0.084) TCGA-FR-A726-01 19 5994839 5994839 G A RFX2 3'UTR 0.25 TCGA-FR-A726-01 19 6016249 6016249 C T RFX2 Missense_Mutation p.E211K 0.25 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 19 6182817 6182817 C T ACSBG2 Missense_Mutation p.P321L 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 19 6182878 6182878 G A ACSBG2 Silent p.L341L 0.31 TCGA-FR-A726-01 19 622871 622871 G A POLRMT Missense_Mutation p.P469S 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 19 6306700 6306700 T A ACER1 3'UTR 0.30 TCGA-FR-A726-01 19 6306814 6306814 C T ACER1 Missense_Mutation p.E236K 0.35 tolerated(0.43) benign(0.002) TCGA-FR-A726-01 19 6368553 6368553 C T CLPP Silent p.S222S 0.33 TCGA-FR-A726-01 19 6466968 6466968 C T CRB3 Missense_Mutation p.H103Y 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-FR-A726-01 19 6467410 6467410 C T DENND1C 3'UTR 0.33 TCGA-FR-A726-01 19 6479061 6479061 G A DENND1C Silent p.P61P 0.37 TCGA-FR-A726-01 19 6591077 6591077 G A CD70 5'UTR 0.33 TCGA-FR-A726-01 19 6664996 6664996 C T TNFSF14 Missense_Mutation p.E222K 0.36 tolerated(0.47) benign(0.02) TCGA-FR-A726-01 19 6670139 6670139 G A TNFSF14 5'UTR 0.22 TCGA-FR-A726-01 19 6679170 6679170 C T C3 Silent p.R1532R 0.25 TCGA-FR-A726-01 19 6686763 6686763 C T C3 Missense_Mutation p.A1214T 0.28 deleterious(0.01) benign(0.167) TCGA-FR-A726-01 19 6694563 6694563 C T C3 Silent p.G1011G 0.40 TCGA-FR-A726-01 19 6697558 6697558 C T C3 Missense_Mutation p.E865K 0.38 deleterious(0.03) probably_damaging(0.93) TCGA-FR-A726-01 19 6697725 6697725 G A C3 Nonsense_Mutation p.R841* 0.28 TCGA-FR-A726-01 19 6760924 6760924 C T SH2D3A Silent p.V48V 0.24 TCGA-FR-A726-01 19 6828177 6828177 C T VAV1 Missense_Mutation p.L340F 0.31 deleterious(0) probably_damaging(0.971) TCGA-FR-A726-01 19 6828467 6828467 A T VAV1 Missense_Mutation p.E354V 0.10 tolerated(0.12) benign(0.254) TCGA-FR-A726-01 19 6854018 6854018 G A VAV1 Missense_Mutation p.R798Q 0.28 tolerated(0.37) possibly_damaging(0.713) TCGA-FR-A726-01 19 6903963 6903963 T G EMR1 Splice_Site p.X268_splice 0.34 TCGA-FR-A726-01 19 6937290 6937290 C T EMR1 Silent p.I806I 0.37 TCGA-FR-A726-01 19 7117025 7117025 G A INSR 3'UTR 0.34 TCGA-FR-A726-01 19 757972 757972 G A MISP Silent p.R342R 0.45 TCGA-FR-A726-01 19 7606432 7606432 C T PNPLA6 Missense_Mutation p.P353S 0.33 tolerated(0.57) benign(0.018) TCGA-FR-A726-01 19 761650 761650 G A MISP Missense_Mutation p.G646D 0.37 tolerated(0.53) benign(0.004) TCGA-FR-A726-01 19 7676864 7676864 C T CAMSAP3 Silent p.S522S 0.30 TCGA-FR-A726-01 19 7682521 7682521 G A CAMSAP3 Missense_Mutation p.E1167K 0.32 deleterious(0) probably_damaging(0.946) TCGA-FR-A726-01 19 7692186 7692186 G A XAB2 Silent p.F155F 0.34 TCGA-FR-A726-01 19 7696656 7696656 T C PCP2 Silent p.Q110Q 0.17 TCGA-FR-A726-01 19 7755301 7755301 C T FCER2 Silent p.P204P 0.31 TCGA-FR-A726-01 19 7794790 7794790 A C CLEC4G Silent p.G220G 0.31 TCGA-FR-A726-01 19 7914195 7914195 C T EVI5L Silent p.I202I 0.29 TCGA-FR-A726-01 19 7964961 7964961 C T LRRC8E Silent p.F518F 0.48 TCGA-FR-A726-01 19 8137963 8137963 A C FBN3 Missense_Mutation p.F2641V 0.19 tolerated(0.17) possibly_damaging(0.85) TCGA-FR-A726-01 19 8156470 8156470 G A FBN3 Silent p.I1970I 0.25 TCGA-FR-A726-01 19 8367395 8367395 G A CD320 Silent p.A267A 0.36 TCGA-FR-A726-01 19 8550647 8550647 C T HNRNPM Silent p.G445G 0.32 TCGA-FR-A726-01 19 8563472 8563472 C T PRAM1 Missense_Mutation p.S407N 0.37 tolerated(0.08) benign(0.056) TCGA-FR-A726-01 19 8618320 8618320 C T MYO1F Missense_Mutation p.G110R 0.34 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 19 886109 886109 G A MED16 Silent p.I180I 0.41 TCGA-FR-A726-01 19 8994500 8994500 T C MUC16 Missense_Mutation p.T13798A 0.30 probably_damaging(0.996) TCGA-FR-A726-01 19 9002184 9002184 G A MUC16 Silent p.F13440F 0.28 TCGA-FR-A726-01 19 9019338 9019338 G A MUC16 Missense_Mutation p.P12517S 0.22 benign(0.19) TCGA-FR-A726-01 19 9020004 9020004 C T MUC16 Silent p.R12497R 0.32 TCGA-FR-A726-01 19 9024869 9024869 C T MUC16 Silent p.E12331E 0.32 TCGA-FR-A726-01 19 9045976 9045976 C T MUC16 Silent p.E11885E 0.28 TCGA-FR-A726-01 19 9047127 9047127 C T MUC16 Missense_Mutation p.V11502I 0.24 benign(0.402) TCGA-FR-A726-01 19 9047166 9047166 C T MUC16 Missense_Mutation p.A11489T 0.23 benign(0.002) TCGA-FR-A726-01 19 9049163 9049163 G A MUC16 Missense_Mutation p.S10823L 0.35 benign(0.402) TCGA-FR-A726-01 19 9049966 9049966 C T MUC16 Silent p.R10555R 0.29 TCGA-FR-A726-01 19 9050038 9050038 G A MUC16 Silent p.F10531F 0.33 TCGA-FR-A726-01 19 9050067 9050067 C T MUC16 Missense_Mutation p.E10522K 0.33 benign(0.007) TCGA-FR-A726-01 19 9057851 9057851 C T MUC16 Silent p.R9865R 0.27 TCGA-FR-A726-01 19 9058844 9058844 G A MUC16 Silent p.S9534S 0.27 TCGA-FR-A726-01 19 9059068 9059068 G A MUC16 Missense_Mutation p.P9460S 0.30 unknown(0) TCGA-FR-A726-01 19 9059639 9059639 G A MUC16 Silent p.T9269T 0.36 TCGA-FR-A726-01 19 9059924 9059924 C T MUC16 Silent p.V9174V 0.24 TCGA-FR-A726-01 19 9065504 9065504 A C MUC16 Silent p.T7314T 0.09 TCGA-FR-A726-01 19 9067097 9067097 C T MUC16 Silent p.K6783K 0.27 TCGA-FR-A726-01 19 9068733 9068733 G A MUC16 Missense_Mutation p.S6238F 0.28 unknown(0) TCGA-FR-A726-01 19 9069384 9069384 G A MUC16 Missense_Mutation p.S6021F 0.06 unknown(0) TCGA-FR-A726-01 19 9069483 9069483 C T MUC16 Missense_Mutation p.S5988N 0.37 unknown(0) TCGA-FR-A726-01 19 9071975 9071975 G T MUC16 Silent p.T5157T 0.35 TCGA-FR-A726-01 19 9072521 9072521 G A MUC16 Silent p.T4975T 0.28 TCGA-FR-A726-01 19 9072751 9072751 C T MUC16 Missense_Mutation p.E4899K 0.31 unknown(0) TCGA-FR-A726-01 19 9074833 9074833 C T MUC16 Missense_Mutation p.D4205N 0.37 unknown(0) TCGA-FR-A726-01 19 9075309 9075309 C T MUC16 Missense_Mutation p.G4046E 0.24 unknown(0) TCGA-FR-A726-01 19 9083938 9083938 G A MUC16 Missense_Mutation p.P2626L 0.26 unknown(0) TCGA-FR-A726-01 19 9085057 9085057 G A MUC16 Missense_Mutation p.S2253F 0.35 unknown(0) TCGA-FR-A726-01 19 9085504 9085504 C T MUC16 Missense_Mutation p.R2104K 0.34 unknown(0) TCGA-FR-A726-01 19 9086637 9086637 C T MUC16 Silent p.Q1726Q 0.31 TCGA-FR-A726-01 19 9086715 9086715 A C MUC16 Silent p.V1700V 0.09 TCGA-FR-A726-01 19 9086766 9086766 G A MUC16 Silent p.L1683L 0.32 TCGA-FR-A726-01 19 9087201 9087201 G A MUC16 Silent p.T1538T 0.32 TCGA-FR-A726-01 19 9087657 9087657 G A MUC16 Silent p.I1386I 0.34 TCGA-FR-A726-01 19 9089257 9089257 G C MUC16 Missense_Mutation p.S853C 0.32 unknown(0) TCGA-FR-A726-01 19 9090330 9090330 G A MUC16 Silent p.S495S 0.42 TCGA-FR-A726-01 19 9090366 9090366 G A MUC16 Silent p.L483L 0.39 TCGA-FR-A726-01 19 9091402 9091402 C T MUC16 Missense_Mutation p.G138E 0.27 unknown(0) TCGA-FR-A726-01 19 9091796 9091796 G A MUC16 Missense_Mutation p.L7F 0.19 unknown(0) TCGA-FR-A726-01 19 9225580 9225580 G A OR7G1 Missense_Mutation p.P287L 0.24 deleterious(0) possibly_damaging(0.743) TCGA-FR-A726-01 19 9236820 9236820 C T OR7G3 Silent p.R269R 0.28 TCGA-FR-A726-01 19 9270837 9270837 C T ZNF317 Silent p.F172F 0.19 TCGA-FR-A726-01 19 9297155 9297155 G A OR7D2 Missense_Mutation p.G233E 0.28 deleterious_low_confidence(0) benign(0.208) TCGA-FR-A726-01 19 9325274 9325274 C T OR7D4 Silent p.K80K 0.32 TCGA-FR-A726-01 19 9361733 9361733 C T OR7E24 Missense_Mutation p.P5L 0.43 deleterious_low_confidence(0.02) benign(0.039) TCGA-FR-A726-01 19 9361859 9361859 G A OR7E24 Missense_Mutation p.G47E 0.29 deleterious(0.02) possibly_damaging(0.835) TCGA-FR-A726-01 19 9453885 9453885 C T ZNF559 3'UTR 0.27 TCGA-FR-A726-01 19 9491742 9491742 C T ZNF177 Silent p.V245V 0.32 TCGA-FR-A726-01 19 9577371 9577371 G T ZNF560 Missense_Mutation p.T751K 0.30 tolerated(0.32) probably_damaging(0.937) TCGA-FR-A726-01 19 9578076 9578076 A T ZNF560 Missense_Mutation p.F516Y 0.32 tolerated(0.85) possibly_damaging(0.787) TCGA-FR-A726-01 19 9801731 9801731 G A ZNF812 Missense_Mutation p.P150S 0.33 tolerated(0.55) benign(0.219) TCGA-FR-A726-01 19 9868869 9868869 G A ZNF846 Missense_Mutation p.S295L 0.32 deleterious(0.04) benign(0.149) TCGA-FR-A726-01 1 100741244 100741244 T A RTCA Silent p.P248P 0.33 TCGA-FR-A726-01 1 100964519 100964519 G A CDC14A Missense_Mutation p.G486R 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FR-A726-01 1 101186213 101186213 G A VCAM1 Missense_Mutation p.M82I 0.44 tolerated(0.11) benign(0.27) TCGA-FR-A726-01 1 101186269 101186269 C T VCAM1 Missense_Mutation p.S101F 0.45 deleterious(0.01) possibly_damaging(0.751) TCGA-FR-A726-01 1 101198044 101198044 G A VCAM1 Missense_Mutation p.M532I 0.34 tolerated(0.46) benign(0.02) TCGA-FR-A726-01 1 101198189 101198189 G A VCAM1 Missense_Mutation p.G581R 0.23 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 1 101704664 101704664 G A S1PR1 Missense_Mutation p.E42K 0.23 tolerated(0.73) benign(0) TCGA-FR-A726-01 1 103352442 103352442 C T COL11A1 Missense_Mutation p.M1593I 0.32 unknown(0) TCGA-FR-A726-01 1 103354310 103354310 G A COL11A1 Missense_Mutation p.P1508L 0.28 unknown(0) TCGA-FR-A726-01 1 103355058 103355058 G T COL11A1 Silent p.R1473R 0.25 TCGA-FR-A726-01 1 103400113 103400113 C G COL11A1 Splice_Site p.X1165_splice 0.33 TCGA-FR-A726-01 1 103463909 103463909 C T COL11A1 Missense_Mutation p.G718E 0.21 unknown(0) TCGA-FR-A726-01 1 103468000 103468000 C T COL11A1 Missense_Mutation p.G694E 0.22 unknown(0) TCGA-FR-A726-01 1 103491454 103491454 C T COL11A1 Intron 0.29 TCGA-FR-A726-01 1 104160054 104160054 C T AMY2A 5'UTR 0.19 TCGA-FR-A726-01 1 104202982 104202982 G A AMY1A Silent p.K293K 0.19 TCGA-FR-A726-01 1 104203237 104203237 C T AMY1A Missense_Mutation p.P347L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 10436807 10436807 C T KIF1B 3'UTR 0.29 TCGA-FR-A726-01 1 10510377 10510377 G A CORT Missense_Mutation p.E33K 0.33 tolerated(0.92) benign(0.006) TCGA-FR-A726-01 1 107599391 107599391 G A PRMT6 Silent p.G18G 0.45 TCGA-FR-A726-01 1 107691158 107691158 C T NTNG1 5'UTR 0.37 TCGA-FR-A726-01 1 108303444 108303444 G A VAV3 Missense_Mutation p.P327S 0.32 deleterious(0.01) possibly_damaging(0.451) TCGA-FR-A726-01 1 108417537 108417537 G A VAV3 Missense_Mutation p.R103C 0.29 deleterious(0) probably_damaging(0.941) TCGA-FR-A726-01 1 109265133 109265133 G A FNDC7 Missense_Mutation p.G259R 0.35 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 1 109391586 109391586 C T AKNAD1 Missense_Mutation p.G377E 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 109553608 109553608 G A WDR47 Nonsense_Mutation p.Q361* 0.23 TCGA-FR-A726-01 1 109707275 109707275 G T KIAA1324 Silent p.L143L 0.32 TCGA-FR-A726-01 1 109707276 109707276 G A KIAA1324 Missense_Mutation p.D144N 0.31 tolerated(0.64) benign(0.007) TCGA-FR-A726-01 1 109772072 109772072 C T SARS Missense_Mutation p.L109F 0.30 tolerated(0.19) benign(0.014) TCGA-FR-A726-01 1 109815498 109815498 C T CELSR2 Silent p.D2729D 0.21 TCGA-FR-A726-01 1 109839805 109839805 G A MYBPHL Missense_Mutation p.P146L 0.26 deleterious(0.02) probably_damaging(0.943) TCGA-FR-A726-01 1 109898085 109898085 A T SORT1 Missense_Mutation p.D149E 0.27 deleterious(0) probably_damaging(0.968) TCGA-FR-A726-01 1 110018205 110018205 C T SYPL2 Silent p.L44L 0.30 TCGA-FR-A726-01 1 110018301 110018301 C T SYPL2 Silent p.I76I 0.38 TCGA-FR-A726-01 1 110019590 110019590 C T SYPL2 Silent p.F149F 0.30 TCGA-FR-A726-01 1 110019591 110019591 C T SYPL2 Missense_Mutation p.P150S 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A726-01 1 11007835 11007835 C T C1orf127 Missense_Mutation p.G786E 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A726-01 1 110085549 110085549 G A GPR61 5'UTR 0.22 TCGA-FR-A726-01 1 110086556 110086556 C T GPR61 Silent p.F304F 0.35 TCGA-FR-A726-01 1 11017793 11017793 G A C1orf127 Silent p.S191S 0.25 TCGA-FR-A726-01 1 110251135 110251135 G A GSTM5 5'Flank 0.56 TCGA-FR-A726-01 1 110256323 110256323 G A GSTM5 Silent p.L100L 0.33 TCGA-FR-A726-01 1 110256324 110256324 G A GSTM5 Missense_Mutation p.E101K 0.34 deleterious(0.02) possibly_damaging(0.866) TCGA-FR-A726-01 1 110301913 110301913 C T EPS8L3 Missense_Mutation p.E118K 0.32 deleterious(0.01) possibly_damaging(0.904) TCGA-FR-A726-01 1 110766506 110766506 C T KCNC4 Silent p.I533I 0.37 TCGA-FR-A726-01 1 110882976 110882976 C T RBM15 Missense_Mutation p.P317S 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A726-01 1 110998915 110998915 C T PROK1 Missense_Mutation p.S87F 0.29 tolerated(0.18) possibly_damaging(0.766) TCGA-FR-A726-01 1 111061414 111061414 G A KCNA10 5'UTR 0.50 TCGA-FR-A726-01 1 11130972 11130972 G A EXOSC10 Silent p.V767V 0.33 TCGA-FR-A726-01 1 111490704 111490704 G A LRIF1 Silent p.F729F 0.33 TCGA-FR-A726-01 1 111660681 111660681 G A DRAM2 3'UTR 0.33 TCGA-FR-A726-01 1 111773915 111773915 G A CHI3L2 Missense_Mutation p.G110R 0.34 tolerated(0.79) benign(0.006) TCGA-FR-A726-01 1 1118404 1118404 G A TTLL10 Silent p.G355G 0.35 TCGA-FR-A726-01 1 111862893 111862893 G A CHIA Silent p.G412G 0.34 TCGA-FR-A726-01 1 111957478 111957478 G A OVGP1 Missense_Mutation p.P549S 0.35 deleterious_low_confidence(0.03) benign(0.133) TCGA-FR-A726-01 1 111957665 111957665 G A OVGP1 Silent p.S486S 0.34 TCGA-FR-A726-01 1 111964063 111964063 C T OVGP1 Nonsense_Mutation p.W246* 0.28 TCGA-FR-A726-01 1 112045985 112045985 C T ADORA3 5'UTR 0.43 TCGA-FR-A726-01 1 11204735 11204735 G A MTOR Silent p.I1614I 0.27 TCGA-FR-A726-01 1 112525108 112525108 C T KCND3 Missense_Mutation p.E81K 0.21 deleterious(0) possibly_damaging(0.715) TCGA-FR-A726-01 1 11253778 11253778 G A ANGPTL7 Missense_Mutation p.E207K 0.33 deleterious(0.03) benign(0.021) TCGA-FR-A726-01 1 112999864 112999864 C T CTTNBP2NL Missense_Mutation p.P584S 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 1 113010038 113010038 C T WNT2B 5'UTR 0.33 TCGA-FR-A726-01 1 113237202 113237202 C T MOV10 Missense_Mutation p.P475S 0.40 deleterious(0.02) probably_damaging(0.967) TCGA-FR-A726-01 1 11345811 11345811 C T UBIAD1 Missense_Mutation p.P214S 0.36 tolerated(0.09) possibly_damaging(0.542) TCGA-FR-A726-01 1 11345812 11345812 C T UBIAD1 Missense_Mutation p.P214L 0.34 tolerated(0.22) benign(0.223) TCGA-FR-A726-01 1 11346026 11346026 C T UBIAD1 Silent p.L285L 0.06 TCGA-FR-A726-01 1 11346027 11346027 C T UBIAD1 Missense_Mutation p.P286S 0.06 deleterious(0) possibly_damaging(0.739) TCGA-FR-A726-01 1 1140881 1140881 G A TNFRSF18 Intron 0.32 TCGA-FR-A726-01 1 114310926 114310926 G A RSBN1 Missense_Mutation p.H582Y 0.31 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 1 114362206 114362206 C T PTPN22 Silent p.L784L 0.32 TCGA-FR-A726-01 1 114443759 114443759 C T AP4B1 Intron 0.20 TCGA-FR-A726-01 1 115142002 115142002 G A DENND2C Missense_Mutation p.P726S 0.08 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 1 115142881 115142881 C T DENND2C Silent p.R683R 0.39 TCGA-FR-A726-01 1 115229505 115229505 G A AMPD1 Missense_Mutation p.T114I 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-FR-A726-01 1 115576618 115576618 C T TSHB Missense_Mutation p.P63S 0.22 tolerated(0.5) benign(0.439) TCGA-FR-A726-01 1 115615584 115615584 G A TSPAN2 Silent p.F38F 0.33 TCGA-FR-A726-01 1 11561610 11561610 G A PTCHD2 Silent p.R187R 0.27 TCGA-FR-A726-01 1 11561611 11561611 G A PTCHD2 Missense_Mutation p.D188N 0.27 tolerated_low_confidence(0.1) benign(0.001) TCGA-FR-A726-01 1 11579867 11579867 C T PTCHD2 Silent p.I710I 0.33 TCGA-FR-A726-01 1 115828753 115828753 A G NGF Missense_Mutation p.F222L 0.08 tolerated(0.19) probably_damaging(0.996) TCGA-FR-A726-01 1 115828781 115828781 G A NGF Silent p.T212T 0.22 TCGA-FR-A726-01 1 115828985 115828985 C T NGF Silent p.G144G 0.28 TCGA-FR-A726-01 1 115829083 115829083 G A NGF Missense_Mutation p.P112S 0.40 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 1158687 1158687 G A SDF4 Missense_Mutation p.H172Y 0.40 tolerated(0.78) benign(0.004) TCGA-FR-A726-01 1 11591707 11591707 C T PTCHD2 Silent p.S1105S 0.30 TCGA-FR-A726-01 1 11591708 11591708 C T PTCHD2 Missense_Mutation p.H1106Y 0.29 tolerated(0.07) benign(0.036) TCGA-FR-A726-01 1 11596717 11596717 C T PTCHD2 Missense_Mutation p.P1385S 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 1 116206830 116206830 G A VANGL1 Silent p.T251T 0.28 TCGA-FR-A726-01 1 116569517 116569517 C T SLC22A15 Missense_Mutation p.S201L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 117087060 117087060 A T CD58 Missense_Mutation p.N79K 0.33 tolerated(0.31) benign(0.091) TCGA-FR-A726-01 1 117297415 117297415 A T CD2 Missense_Mutation p.K75I 0.32 deleterious(0.05) benign(0.039) TCGA-FR-A726-01 1 117516889 117516889 G C PTGFRN Missense_Mutation p.G704A 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-FR-A726-01 1 117644097 117644097 C T TTF2 Missense_Mutation p.S1147F 0.31 tolerated(0.09) benign(0.031) TCGA-FR-A726-01 1 11766464 11766464 G A DRAXIN Nonsense_Mutation p.W50* 0.34 TCGA-FR-A726-01 1 117699588 117699588 A G VTCN1 Intron 0.38 TCGA-FR-A726-01 1 118042090 118042090 C T MAN1A2 Missense_Mutation p.R531C 0.35 deleterious(0.03) probably_damaging(0.978) TCGA-FR-A726-01 1 118166010 118166010 C T FAM46C Missense_Mutation p.R174W 0.38 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 118449178 118449178 G A GDAP2 Missense_Mutation p.H196Y 0.36 tolerated(0.63) probably_damaging(0.99) TCGA-FR-A726-01 1 11851286 11851286 G A MTHFR Missense_Mutation p.P577L 0.29 deleterious(0) possibly_damaging(0.841) TCGA-FR-A726-01 1 118514544 118514544 C T SPAG17 Missense_Mutation p.E2090K 0.36 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 1 11888623 11888623 A C CLCN6 Missense_Mutation p.N355H 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 119427583 119427583 C T TBX15 Silent p.R421R 0.26 TCGA-FR-A726-01 1 119427584 119427584 C T TBX15 Missense_Mutation p.R421K 0.26 tolerated(0.26) probably_damaging(0.952) TCGA-FR-A726-01 1 119929290 119929290 C T HAO2 Missense_Mutation p.L203F 0.26 tolerated(0.24) benign(0.008) TCGA-FR-A726-01 1 120283010 120283010 T G PHGDH Missense_Mutation p.V316G 0.28 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 1 120293450 120293450 C T HMGCS2 Missense_Mutation p.R501Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 120307042 120307042 G A HMGCS2 Silent p.S104S 0.27 TCGA-FR-A726-01 1 120307177 120307177 C T HMGCS2 Silent p.L59L 0.36 TCGA-FR-A726-01 1 120336983 120336983 C T REG4 3'UTR 0.47 TCGA-FR-A726-01 1 120436518 120436518 G A ADAM30 3'UTR 0.41 TCGA-FR-A726-01 1 120437544 120437544 C T ADAM30 Silent p.G472G 0.28 TCGA-FR-A726-01 1 120438407 120438407 G A ADAM30 Missense_Mutation p.P185S 0.40 deleterious(0.04) benign(0.037) TCGA-FR-A726-01 1 120459291 120459291 G A NOTCH2 Silent p.A2018A 0.27 TCGA-FR-A726-01 1 120906405 120906405 G A RP11-439A17.4 5'Flank 0.22 TCGA-FR-A726-01 1 120927170 120927170 C T FCGR1B Silent p.G270G 0.28 TCGA-FR-A726-01 1 12164553 12164553 C T TNFRSF8 Missense_Mutation p.S129F 0.37 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 1 12336207 12336207 T C VPS13D Silent p.V854V 0.18 TCGA-FR-A726-01 1 12343269 12343269 G A VPS13D Missense_Mutation p.E1704K 0.29 benign(0.004) TCGA-FR-A726-01 1 12475204 12475204 C T VPS13D Missense_Mutation p.P4032L 0.32 probably_damaging(0.998) TCGA-FR-A726-01 1 12704715 12704715 C T AADACL4 Silent p.F50F 0.25 TCGA-FR-A726-01 1 12785943 12785943 C T AADACL3 Nonsense_Mutation p.Q345* 0.30 TCGA-FR-A726-01 1 12786038 12786038 G A AADACL3 3'Flank 0.21 TCGA-FR-A726-01 1 12820721 12820721 G A C1orf158 Missense_Mutation p.G141E 0.22 deleterious(0.03) possibly_damaging(0.81) TCGA-FR-A726-01 1 12853460 12853460 G A PRAMEF1 Missense_Mutation p.M28I 0.32 deleterious(0) benign(0.001) TCGA-FR-A726-01 1 12853499 12853499 G A PRAMEF1 Missense_Mutation p.M41I 0.32 tolerated(0.06) benign(0.01) TCGA-FR-A726-01 1 12853535 12853535 G A PRAMEF1 Silent p.T53T 0.29 TCGA-FR-A726-01 1 12908038 12908038 C T HNRNPCL1 Silent p.A35A 0.27 TCGA-FR-A726-01 1 12908056 12908056 C T HNRNPCL1 Silent p.K29K 0.12 TCGA-FR-A726-01 1 12941798 12941798 G A PRAMEF4 Missense_Mutation p.S251F 0.24 tolerated(0.07) benign(0.009) TCGA-FR-A726-01 1 12941950 12941950 G A PRAMEF4 Silent p.I200I 0.30 TCGA-FR-A726-01 1 12943132 12943132 G A PRAMEF4 Silent p.S28S 0.49 TCGA-FR-A726-01 1 12954674 12954674 G A PRAMEF10 Silent p.Y203Y 0.29 TCGA-FR-A726-01 1 12955598 12955598 G A PRAMEF10 Silent p.T27T 0.21 TCGA-FR-A726-01 1 12980107 12980107 G A PRAMEF7 Silent p.G433G 0.32 TCGA-FR-A726-01 1 13001210 13001210 C T PRAMEF6 Missense_Mutation p.R158K 0.19 tolerated(0.74) benign(0.014) TCGA-FR-A726-01 1 13036565 13036565 G A PRAMEF22 Missense_Mutation p.E213K 0.25 deleterious(0.04) possibly_damaging(0.686) TCGA-FR-A726-01 1 13718998 13718998 C T PRAMEF17 3'UTR 0.39 TCGA-FR-A726-01 1 1396230 1396230 G A ATAD3C Missense_Mutation p.E305K 0.36 deleterious(0) possibly_damaging(0.821) TCGA-FR-A726-01 1 142803644 142803644 C T RP11-423O2.5 RNA 0.15 TCGA-FR-A726-01 1 1431221 1431221 C T ATAD3B 3'UTR 0.24 TCGA-FR-A726-01 1 143767770 143767770 C T PPIAL4G Missense_Mutation p.D27N 0.28 deleterious_low_confidence(0.03) benign(0.279) TCGA-FR-A726-01 1 144855877 144855877 C T PDE4DIP Missense_Mutation p.G2226S 0.37 tolerated(0.23) benign(0.02) TCGA-FR-A726-01 1 144882499 144882499 G A PDE4DIP Missense_Mutation p.P1174S 0.11 tolerated(0.11) benign(0.042) TCGA-FR-A726-01 1 144918866 144918866 G A PDE4DIP Silent p.N440N 0.13 TCGA-FR-A726-01 1 145293484 145293484 C T NBPF10 Nonsense_Mutation p.Q27* 0.07 TCGA-FR-A726-01 1 145298258 145298258 C T NBPF10 Missense_Mutation p.H224Y 0.08 probably_damaging(0.925) TCGA-FR-A726-01 1 145299840 145299840 C T NBPF10 Missense_Mutation p.P297S 0.08 possibly_damaging(0.602) TCGA-FR-A726-01 1 145303970 145303970 C T NBPF10 Missense_Mutation p.S456L 0.12 benign(0.434) TCGA-FR-A726-01 1 145323685 145323685 C T NBPF10 Silent p.D1174D 0.04 TCGA-FR-A726-01 1 145416965 145416965 G A HFE2 3'UTR 0.21 TCGA-FR-A726-01 1 145474466 145474466 C T ANKRD34A Missense_Mutation p.P380S 0.20 tolerated(1) benign(0.052) TCGA-FR-A726-01 1 145537806 145537806 C T ITGA10 Missense_Mutation p.P882S 0.31 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 1 145562359 145562359 G A ANKRD35 Missense_Mutation p.E683K 0.27 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 1 146680558 146680558 C T FMO5 Missense_Mutation p.G229E 0.23 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 1 147120153 147120153 C T ACP6 Silent p.G346G 0.18 TCGA-FR-A726-01 1 147230659 147230659 C T GJA5 Missense_Mutation p.G230S 0.08 deleterious(0.04) benign(0.128) TCGA-FR-A726-01 1 147380909 147380909 C T GJA8 Missense_Mutation p.S276F 0.40 tolerated(0.12) benign(0.394) TCGA-FR-A726-01 1 148025841 148025841 G A NBPF14 Silent p.L3L 0.31 TCGA-FR-A726-01 1 148933290 148933290 G A RP11-14N7.2 Splice_Site 0.10 TCGA-FR-A726-01 1 149754324 149754324 C T FCGR1A Missense_Mutation p.L9F 0.57 tolerated(0.12) benign(0.11) TCGA-FR-A726-01 1 149763213 149763213 G A FCGR1A 3'UTR 0.30 TCGA-FR-A726-01 1 149916908 149916908 G A OTUD7B Silent p.S460S 0.25 TCGA-FR-A726-01 1 1500272 1500272 G A SSU72 Silent p.S35S 0.40 TCGA-FR-A726-01 1 150237096 150237096 C T CA14 3'UTR 0.19 TCGA-FR-A726-01 1 150300881 150300881 C T PRPF3 Missense_Mutation p.P127S 0.41 tolerated(0.12) benign(0.048) TCGA-FR-A726-01 1 150444046 150444046 C T RPRD2 Silent p.S874S 0.47 TCGA-FR-A726-01 1 150530500 150530500 G A ADAMTSL4 Missense_Mutation p.E753K 0.52 tolerated(0.08) benign(0.278) TCGA-FR-A726-01 1 150549763 150549763 G A MCL1 3'UTR 0.47 TCGA-FR-A726-01 1 150921923 150921923 C T SETDB1 Missense_Mutation p.S501F 0.17 deleterious(0) probably_damaging(0.929) TCGA-FR-A726-01 1 150921966 150921966 C T SETDB1 Silent p.V515V 0.06 TCGA-FR-A726-01 1 150960608 150960608 G A ANXA9 Missense_Mutation p.E247K 0.26 tolerated(0.12) benign(0.052) TCGA-FR-A726-01 1 151020436 151020436 T A C1orf56 Nonsense_Mutation p.L38* 0.35 TCGA-FR-A726-01 1 151039887 151039887 G A MLLT11 Missense_Mutation p.G63S 0.26 tolerated(0.24) benign(0.025) TCGA-FR-A726-01 1 151262332 151262332 C T ZNF687 Missense_Mutation p.P938L 0.20 tolerated(0.4) benign(0.004) TCGA-FR-A726-01 1 151314705 151314705 G A RFX5 Missense_Mutation p.S603F 0.23 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-FR-A726-01 1 151316269 151316269 G A RFX5 Silent p.I215I 0.20 TCGA-FR-A726-01 1 151535134 151535134 C T TUFT1 Missense_Mutation p.S70F 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 151688569 151688569 G A CELF3 5'UTR 0.19 TCGA-FR-A726-01 1 151748645 151748645 C T TDRKH Missense_Mutation p.G382R 0.26 deleterious(0) possibly_damaging(0.897) TCGA-FR-A726-01 1 151752615 151752615 A C TDRKH Missense_Mutation p.L78R 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 152058000 152058000 G A TCHHL1 Silent p.L720L 0.52 TCGA-FR-A726-01 1 152058145 152058145 C T TCHHL1 Silent p.E671E 0.28 TCGA-FR-A726-01 1 152059495 152059495 G A TCHHL1 Silent p.P221P 0.42 TCGA-FR-A726-01 1 152059766 152059766 T A TCHHL1 Missense_Mutation p.K131M 0.20 deleterious(0) possibly_damaging(0.576) TCGA-FR-A726-01 1 152127104 152127104 C T RPTN 3'UTR 0.52 TCGA-FR-A726-01 1 152187656 152187656 C T HRNR Missense_Mutation p.G2150E 0.13 unknown(0) TCGA-FR-A726-01 1 152187923 152187923 C T HRNR Missense_Mutation p.G2061E 0.29 unknown(0) TCGA-FR-A726-01 1 152275729 152275729 C T FLG Missense_Mutation p.R3878K 0.05 unknown(0) TCGA-FR-A726-01 1 152277106 152277106 C T FLG Missense_Mutation p.R3419Q 0.45 unknown(0) TCGA-FR-A726-01 1 152280680 152280680 C T FLG Missense_Mutation p.G2228R 0.24 probably_damaging(0.988) TCGA-FR-A726-01 1 152283090 152283090 T A FLG Missense_Mutation p.K1424N 0.29 benign(0.403) TCGA-FR-A726-01 1 152285640 152285640 C T FLG Silent p.E574E 0.43 TCGA-FR-A726-01 1 152324211 152324211 C T FLG2 Silent p.Q2017Q 0.42 TCGA-FR-A726-01 1 152324635 152324635 C T FLG2 Missense_Mutation p.R1876K 0.06 benign(0.362) TCGA-FR-A726-01 1 152329602 152329602 C G FLG2 Silent p.G220G 0.40 TCGA-FR-A726-01 1 152329604 152329604 C T FLG2 Missense_Mutation p.G220R 0.40 unknown(0) TCGA-FR-A726-01 1 152383251 152383251 C T CRNN Missense_Mutation p.G103R 0.45 tolerated(0.17) benign(0.06) TCGA-FR-A726-01 1 152538648 152538648 G A LCE3E Missense_Mutation p.P13S 0.51 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 1 152595340 152595340 G A LCE3A Silent p.S80S 0.51 TCGA-FR-A726-01 1 152595394 152595394 G A LCE3A Silent p.C62C 0.47 TCGA-FR-A726-01 1 152659696 152659696 C T LCE2B 3'UTR 0.32 TCGA-FR-A726-01 1 152681657 152681657 C T LCE4A Missense_Mutation p.P36S 0.25 tolerated_low_confidence(0.22) unknown(0) TCGA-FR-A726-01 1 152681855 152681855 G A LCE4A 3'UTR 0.49 TCGA-FR-A726-01 1 152748928 152748928 G A LCE1F Silent p.P27P 0.40 TCGA-FR-A726-01 1 152759815 152759815 C T LCE1E Missense_Mutation p.P14S 0.49 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 1 152777759 152777759 C T LCE1C Missense_Mutation p.G66R 0.49 tolerated_low_confidence(0.14) unknown(0) TCGA-FR-A726-01 1 153043060 153043060 C T SPRR2B 3'UTR 0.45 TCGA-FR-A726-01 1 153177586 153177586 C T LELP1 3'UTR 0.23 TCGA-FR-A726-01 1 153275022 153275022 C T PGLYRP3 Missense_Mutation p.M197I 0.41 tolerated(0.06) possibly_damaging(0.869) TCGA-FR-A726-01 1 153276430 153276430 G A PGLYRP3 Silent p.A144A 0.23 TCGA-FR-A726-01 1 153312952 153312952 C T PGLYRP4 Silent p.G243G 0.51 TCGA-FR-A726-01 1 153318661 153318661 G A PGLYRP4 Missense_Mutation p.S19F 0.24 tolerated_low_confidence(0.55) benign(0.01) TCGA-FR-A726-01 1 153409641 153409641 C T S100A7L2 Missense_Mutation p.D78N 0.07 deleterious(0) possibly_damaging(0.908) TCGA-FR-A726-01 1 153409684 153409684 C T S100A7L2 Missense_Mutation p.M63I 0.42 tolerated(0.26) benign(0) TCGA-FR-A726-01 1 153661520 153661520 G A NPR1 Missense_Mutation p.A837T 0.23 tolerated(0.16) possibly_damaging(0.902) TCGA-FR-A726-01 1 15386773 15386773 G A KAZN Missense_Mutation p.R341Q 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-FR-A726-01 1 153915521 153915521 G A DENND4B Missense_Mutation p.P135S 0.45 tolerated(0.53) benign(0.062) TCGA-FR-A726-01 1 153924882 153924882 G A CRTC2 Missense_Mutation p.P248L 0.53 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 153982545 153982545 C T NUP210L Silent p.A1611A 0.46 TCGA-FR-A726-01 1 154002409 154002409 C T NUP210L Missense_Mutation p.G1273E 0.23 deleterious(0.04) benign(0.242) TCGA-FR-A726-01 1 154061998 154061998 G A NUP210L Missense_Mutation p.R754C 0.27 deleterious(0) possibly_damaging(0.582) TCGA-FR-A726-01 1 15441089 15441089 C T KAZN Silent p.C762C 0.32 TCGA-FR-A726-01 1 154544175 154544175 C T CHRNB2 Silent p.L292L 0.37 TCGA-FR-A726-01 1 154544319 154544319 G A CHRNB2 Silent p.L340L 0.52 TCGA-FR-A726-01 1 154573698 154573698 G A ADAR Nonsense_Mutation p.R474* 0.55 TCGA-FR-A726-01 1 154842112 154842112 G A KCNN3 Missense_Mutation p.A110V 0.24 deleterious_low_confidence(0.03) benign(0.086) TCGA-FR-A726-01 1 154917466 154917466 G A PBXIP1 3'UTR 0.17 TCGA-FR-A726-01 1 154932032 154932032 G A PYGO2 Silent p.P148P 0.08 TCGA-FR-A726-01 1 155005616 155005616 C T DCST2 Silent p.L131L 0.45 TCGA-FR-A726-01 1 155254361 155254361 C T HCN3 Missense_Mutation p.A301V 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A726-01 1 155448148 155448148 C T ASH1L Missense_Mutation p.G1505S 0.19 tolerated_low_confidence(0.47) benign(0.014) TCGA-FR-A726-01 1 155629520 155629520 G A YY1AP1 Silent p.S865S 0.22 TCGA-FR-A726-01 1 155629521 155629521 G A YY1AP1 Missense_Mutation p.S865F 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.466) TCGA-FR-A726-01 1 155851208 155851208 G A SYT11 Missense_Mutation p.S402N 0.13 tolerated(0.07) possibly_damaging(0.787) TCGA-FR-A726-01 1 155885707 155885707 C T KIAA0907 Silent p.E534E 0.23 TCGA-FR-A726-01 1 156011382 156011382 G A UBQLN4 Missense_Mutation p.S516F 0.25 deleterious(0.01) possibly_damaging(0.598) TCGA-FR-A726-01 1 156146216 156146216 C T SEMA4A Missense_Mutation p.P572S 0.58 tolerated(0.08) benign(0.01) TCGA-FR-A726-01 1 156222797 156222797 G A SMG5 Missense_Mutation p.P859S 0.26 deleterious(0.04) probably_damaging(0.984) TCGA-FR-A726-01 1 156376862 156376862 C T C1orf61 Intron 0.47 TCGA-FR-A726-01 1 156507008 156507008 G A IQGAP3 Silent p.F1129F 0.21 TCGA-FR-A726-01 1 156507028 156507028 G A IQGAP3 Missense_Mutation p.L1123F 0.21 deleterious(0.01) possibly_damaging(0.873) TCGA-FR-A726-01 1 156552883 156552883 C T TTC24 Silent p.A320A 0.24 TCGA-FR-A726-01 1 156618544 156618544 C T BCAN Silent p.P318P 0.45 TCGA-FR-A726-01 1 156622782 156622782 C T BCAN Intron 0.53 TCGA-FR-A726-01 1 156877947 156877947 C T PEAR1 Silent p.R310R 0.48 TCGA-FR-A726-01 1 156882048 156882048 C T PEAR1 Missense_Mutation p.P654L 0.44 tolerated(0.64) benign(0.006) TCGA-FR-A726-01 1 156902286 156902286 G A LRRC71 Silent p.K504K 0.42 TCGA-FR-A726-01 1 156916532 156916532 G A ARHGEF11 Silent p.F872F 0.24 TCGA-FR-A726-01 1 156925501 156925501 G A ARHGEF11 Nonsense_Mutation p.Q588* 0.07 TCGA-FR-A726-01 1 157504680 157504680 G A FCRL5 Missense_Mutation p.P469S 0.24 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 1 157512895 157512895 G A FCRL5 Missense_Mutation p.P293S 0.21 tolerated(0.1) possibly_damaging(0.596) TCGA-FR-A726-01 1 157648328 157648328 G A FCRL3 3'UTR 0.18 TCGA-FR-A726-01 1 157648475 157648475 C T FCRL3 3'UTR 0.29 TCGA-FR-A726-01 1 157665296 157665296 G A FCRL3 Missense_Mutation p.P412S 0.43 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 157668387 157668387 G A FCRL3 Missense_Mutation p.P29S 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A726-01 1 15766879 15766879 C T CTRC Missense_Mutation p.P42S 0.37 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 157767729 157767729 A G FCRL1 Missense_Mutation p.V372A 0.57 tolerated(0.05) benign(0.279) TCGA-FR-A726-01 1 157773789 157773789 G A FCRL1 Silent p.F55F 0.46 TCGA-FR-A726-01 1 15798551 15798551 G A CELA2A 3'UTR 0.28 TCGA-FR-A726-01 1 1580560 1580560 C T CDK11B Silent p.K189K 0.29 TCGA-FR-A726-01 1 158224429 158224429 C T CD1A 5'UTR 0.45 TCGA-FR-A726-01 1 158225110 158225110 C G CD1A Missense_Mutation p.R99G 0.23 deleterious(0.01) benign(0.023) TCGA-FR-A726-01 1 158261016 158261016 G A CD1C Missense_Mutation p.E52K 0.24 deleterious(0.03) benign(0.091) TCGA-FR-A726-01 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.47 deleterious(0.05) benign(0.049) TCGA-FR-A726-01 1 158262422 158262422 T A CD1C Missense_Mutation p.L216H 0.06 deleterious(0.02) benign(0.049) TCGA-FR-A726-01 1 158323665 158323665 C T CD1E 5'UTR 0.40 TCGA-FR-A726-01 1 158323754 158323754 G A CD1E 5'UTR 0.51 TCGA-FR-A726-01 1 158325336 158325336 G A CD1E Missense_Mutation p.G201E 0.43 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 158326659 158326659 G A CD1E Nonsense_Mutation p.W380* 0.25 TCGA-FR-A726-01 1 158369054 158369054 G A OR10T2 Missense_Mutation p.S68L 0.48 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 1 158390027 158390027 G A OR10K2 Silent p.P210P 0.22 TCGA-FR-A726-01 1 158435999 158435999 C T OR10K1 Silent p.V216V 0.21 TCGA-FR-A726-01 1 158436086 158436086 C T OR10K1 Silent p.L245L 0.27 TCGA-FR-A726-01 1 158517122 158517122 G A OR6Y1 Silent p.S258S 0.18 TCGA-FR-A726-01 1 158517123 158517123 G A OR6Y1 Missense_Mutation p.S258F 0.18 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 1 158582696 158582696 C T SPTA1 Missense_Mutation p.E2349K 0.21 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 1 158582715 158582715 G A SPTA1 Silent p.F2342F 0.14 TCGA-FR-A726-01 1 158592791 158592791 T A SPTA1 Missense_Mutation p.K2034N 0.05 tolerated(0.48) possibly_damaging(0.701) TCGA-FR-A726-01 1 158596760 158596760 G A SPTA1 Missense_Mutation p.S1901F 0.04 deleterious(0.04) benign(0.262) TCGA-FR-A726-01 1 158617464 158617464 G A SPTA1 Missense_Mutation p.P1254L 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 158724803 158724803 C T OR6K6 Silent p.I66I 0.24 TCGA-FR-A726-01 1 158724933 158724933 C T OR6K6 Silent p.L110L 0.45 TCGA-FR-A726-01 1 158725116 158725116 C T OR6K6 Nonsense_Mutation p.Q171* 0.43 TCGA-FR-A726-01 1 158746625 158746625 G A OR6N2 Silent p.S267S 0.19 TCGA-FR-A726-01 1 158813101 158813101 C T MNDA Missense_Mutation p.P100S 0.18 tolerated(0.08) benign(0.006) TCGA-FR-A726-01 1 158813766 158813766 G A MNDA Missense_Mutation p.E142K 0.39 tolerated(0.07) benign(0.227) TCGA-FR-A726-01 1 158817632 158817632 C T MNDA Nonsense_Mutation p.R368* 0.40 TCGA-FR-A726-01 1 158908242 158908242 G A PYHIN1 Silent p.T107T 0.49 TCGA-FR-A726-01 1 158911817 158911817 C T PYHIN1 Silent p.F210F 0.48 TCGA-FR-A726-01 1 158911818 158911818 C T PYHIN1 Nonsense_Mutation p.R211* 0.48 TCGA-FR-A726-01 1 158912104 158912104 G A PYHIN1 Missense_Mutation p.R306K 0.45 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 159175806 159175806 G A DARC Missense_Mutation p.G195R 0.53 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 1 159273960 159273960 G A FCER1A Missense_Mutation p.E107K 0.46 tolerated(0.17) benign(0.092) TCGA-FR-A726-01 1 159284027 159284027 G A OR10J3 Silent p.A141A 0.49 TCGA-FR-A726-01 1 159284184 159284184 G A OR10J3 Missense_Mutation p.P89L 0.27 tolerated(0.77) benign(0.001) TCGA-FR-A726-01 1 159505034 159505034 G A OR10J5 Missense_Mutation p.S255F 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A726-01 1 159505705 159505705 G A OR10J5 Silent p.F31F 0.43 TCGA-FR-A726-01 1 159557732 159557732 G A APCS Nonsense_Mutation p.W7* 0.50 TCGA-FR-A726-01 1 159558055 159558055 G A APCS Missense_Mutation p.D77N 0.46 tolerated(0.07) possibly_damaging(0.888) TCGA-FR-A726-01 1 159558079 159558079 G A APCS Missense_Mutation p.E85K 0.23 tolerated(0.44) possibly_damaging(0.454) TCGA-FR-A726-01 1 159558190 159558190 G A APCS Missense_Mutation p.G122S 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 159558464 159558464 G A APCS Missense_Mutation p.G213E 0.47 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 1 159779289 159779289 C T FCRL6 Silent p.S234S 0.49 TCGA-FR-A726-01 1 159802838 159802838 C T SLAMF8 Silent p.F180F 0.42 TCGA-FR-A726-01 1 159832331 159832331 C T VSIG8 5'UTR 0.44 TCGA-FR-A726-01 1 159869861 159869861 G A CCDC19 Intron 0.38 TCGA-FR-A726-01 1 159922197 159922197 C T SLAMF9 Silent p.G173G 0.16 TCGA-FR-A726-01 1 160011549 160011549 C T KCNJ10 Silent p.V258V 0.29 TCGA-FR-A726-01 1 160093813 160093813 G A ATP1A2 Silent p.K154K 0.23 TCGA-FR-A726-01 1 160100060 160100060 G A ATP1A2 Missense_Mutation p.G544R 0.42 deleterious(0.05) benign(0.415) TCGA-FR-A726-01 1 160104352 160104352 G A ATP1A2 Missense_Mutation p.E636K 0.23 tolerated(0.08) benign(0.079) TCGA-FR-A726-01 1 160106495 160106495 G A ATP1A2 Missense_Mutation p.G900E 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 160125888 160125888 C T ATP1A4 Silent p.S155S 0.21 TCGA-FR-A726-01 1 160156474 160156474 G A ATP1A4 Silent p.R1025R 0.20 TCGA-FR-A726-01 1 160276980 160276980 C T COPA Silent p.R425R 0.23 TCGA-FR-A726-01 1 160456378 160456378 T A SLAMF6 3'UTR 0.50 TCGA-FR-A726-01 1 160458940 160458940 C T SLAMF6 Missense_Mutation p.E273K 0.19 deleterious(0.02) benign(0.367) TCGA-FR-A726-01 1 160466077 160466077 G A SLAMF6 Silent p.F52F 0.25 TCGA-FR-A726-01 1 160523811 160523811 C G CD84 Missense_Mutation p.G172R 0.22 deleterious(0.03) possibly_damaging(0.744) TCGA-FR-A726-01 1 16058433 16058433 C T PLEKHM2 Missense_Mutation p.H839Y 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A726-01 1 160654584 160654584 C T CD48 Intron 0.17 TCGA-FR-A726-01 1 16065743 16065743 G A SLC25A34 Missense_Mutation p.D253N 0.28 deleterious(0.03) possibly_damaging(0.753) TCGA-FR-A726-01 1 160719730 160719730 G A SLAMF7 Missense_Mutation p.A166T 0.22 tolerated(0.27) benign(0.199) TCGA-FR-A726-01 1 160719844 160719844 A T SLAMF7 Missense_Mutation p.N204Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 1 160769592 160769592 C T LY9 Silent p.I58I 0.44 TCGA-FR-A726-01 1 160797610 160797610 G A LY9 3'UTR 0.22 TCGA-FR-A726-01 1 160808248 160808248 C T CD244 Missense_Mutation p.R281K 0.25 tolerated(0.07) possibly_damaging(0.46) TCGA-FR-A726-01 1 160914966 160914966 C T ITLN2 Silent p.E314E 0.19 TCGA-FR-A726-01 1 161042573 161042573 C T PVRL4 Missense_Mutation p.E471K 0.29 tolerated(0.15) benign(0.144) TCGA-FR-A726-01 1 161123797 161123797 G A UFC1 Missense_Mutation p.E4K 0.25 tolerated(0.39) benign(0.017) TCGA-FR-A726-01 1 161130930 161130930 C A USP21 Missense_Mutation p.P167H 0.22 deleterious_low_confidence(0) benign(0.431) TCGA-FR-A726-01 1 161188497 161188497 C T FCER1G Missense_Mutation p.S61L 0.42 tolerated(0.2) benign(0.057) TCGA-FR-A726-01 1 161199413 161199413 C T TOMM40L 3'UTR 0.35 TCGA-FR-A726-01 1 161284187 161284187 G A SDHC 5'UTR 0.21 TCGA-FR-A726-01 1 161600936 161600936 G A FCGR3B Silent p.V19V 0.21 TCGA-FR-A726-01 1 161654946 161654946 C T RPL31P11 RNA 0.48 TCGA-FR-A726-01 1 162353431 162353431 C T C1orf226 Silent p.L302L 0.38 TCGA-FR-A726-01 1 16257642 16257642 C T SPEN Missense_Mutation p.S1636F 0.36 benign(0.219) TCGA-FR-A726-01 1 16259967 16259967 C T SPEN Missense_Mutation p.S2411L 0.35 benign(0) TCGA-FR-A726-01 1 162767649 162767649 C T HSD17B7 Silent p.I130I 0.29 TCGA-FR-A726-01 1 163044301 163044301 G A RGS4 Missense_Mutation p.G287E 0.45 tolerated_low_confidence(0.07) benign(0.045) TCGA-FR-A726-01 1 163117203 163117203 G A RGS5 Missense_Mutation p.H163Y 0.46 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 1634985 1634985 G A CDK11A Missense_Mutation p.H664Y 0.27 tolerated(1) unknown(0) TCGA-FR-A726-01 1 16371064 16371064 C T CLCNKB Missense_Mutation p.P26L 0.30 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 1 16462214 16462214 G A EPHA2 Missense_Mutation p.S455F 0.26 deleterious(0.03) probably_damaging(0.969) TCGA-FR-A726-01 1 164769010 164769010 G A PBX1 Silent p.K195K 0.07 TCGA-FR-A726-01 1 164789352 164789352 C T PBX1 Silent p.F347F 0.45 TCGA-FR-A726-01 1 164816037 164816037 G A PBX1 3'UTR 0.55 TCGA-FR-A726-01 1 1650788 1650788 G A CDK11A Missense_Mutation p.H112Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-FR-A726-01 1 165173235 165173235 G A LMX1A Missense_Mutation p.S344F 0.26 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 1 16577512 16577512 G A FBXO42 Missense_Mutation p.R603C 0.34 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-FR-A726-01 1 16578204 16578204 G A FBXO42 Missense_Mutation p.P372L 0.24 deleterious(0.03) probably_damaging(0.915) TCGA-FR-A726-01 1 166958535 166958535 G A MAEL 5'UTR 0.50 TCGA-FR-A726-01 1 166959054 166959054 C T MAEL Silent p.P71P 0.24 TCGA-FR-A726-01 1 166963285 166963285 C T MAEL Nonsense_Mutation p.R168* 0.32 TCGA-FR-A726-01 1 166990920 166990920 G A MAEL Missense_Mutation p.R378K 0.30 tolerated(0.09) benign(0.011) TCGA-FR-A726-01 1 1670393 1670393 G A SLC35E2 Silent p.F142F 0.20 TCGA-FR-A726-01 1 167064111 167064111 G A DUSP27 Missense_Mutation p.E9K 0.32 deleterious(0.03) benign(0.204) TCGA-FR-A726-01 1 167096285 167096285 G A DUSP27 Silent p.E639E 0.52 TCGA-FR-A726-01 1 167097668 167097668 G A DUSP27 Silent p.E1100E 0.22 TCGA-FR-A726-01 1 167666379 167666379 G A RCSD1 Missense_Mutation p.R173Q 0.29 tolerated(0.18) benign(0.22) TCGA-FR-A726-01 1 167742593 167742593 G A MPZL1 Missense_Mutation p.R198Q 0.29 tolerated(0.15) benign(0.007) TCGA-FR-A726-01 1 167817707 167817707 C T ADCY10 Missense_Mutation p.E777K 0.25 tolerated(0.53) benign(0.003) TCGA-FR-A726-01 1 167849417 167849417 G A ADCY10 Silent p.I384I 0.51 TCGA-FR-A726-01 1 168032897 168032897 G A DCAF6 Missense_Mutation p.R780Q 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 1 168032898 168032898 G A DCAF6 Silent p.R780R 0.56 TCGA-FR-A726-01 1 168066065 168066065 G A GPR161 Silent p.V280V 0.48 TCGA-FR-A726-01 1 168260616 168260616 C T TBX19 Missense_Mutation p.S141F 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 1 168549374 168549374 C T XCL1 Silent p.I45I 0.42 TCGA-FR-A726-01 1 16902864 16902864 G A NBPF1 Missense_Mutation p.L673F 0.04 deleterious(0.03) possibly_damaging(0.644) TCGA-FR-A726-01 1 169292464 169292464 A G NME7 Silent p.L57L 0.26 TCGA-FR-A726-01 1 169390959 169390959 C T CCDC181 Missense_Mutation p.G237E 0.45 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 1 169446428 169446428 G A SLC19A2 Missense_Mutation p.P258S 0.22 tolerated(0.21) benign(0.26) TCGA-FR-A726-01 1 169446429 169446429 G T SLC19A2 Silent p.I257I 0.42 TCGA-FR-A726-01 1 169509545 169509545 C T F5 Missense_Mutation p.E1595K 0.09 tolerated(1) benign(0.003) TCGA-FR-A726-01 1 169586484 169586484 G A SELP Missense_Mutation p.S88F 0.38 deleterious(0.04) possibly_damaging(0.711) TCGA-FR-A726-01 1 169672508 169672508 G A SELL Silent p.S293S 0.18 TCGA-FR-A726-01 1 169673741 169673741 C T SELL Missense_Mutation p.G258E 0.19 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 1 169677687 169677687 C T SELL Missense_Mutation p.G128R 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 169696581 169696581 G A SELE Silent p.F518F 0.45 TCGA-FR-A726-01 1 170508536 170508536 C T GORAB Missense_Mutation p.P108S 0.24 tolerated(0.1) possibly_damaging(0.904) TCGA-FR-A726-01 1 170705397 170705397 T A PRRX1 3'UTR 0.18 TCGA-FR-A726-01 1 17084464 17084464 G A MST1L RNA 0.11 TCGA-FR-A726-01 1 170952642 170952642 G A MROH9 Silent p.K232K 0.24 TCGA-FR-A726-01 1 171073066 171073066 C T FMO3 Silent p.I91I 0.24 TCGA-FR-A726-01 1 171249946 171249946 G A FMO1 Missense_Mutation p.G217R 0.41 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 1 171250046 171250046 C T FMO1 Missense_Mutation p.P250L 0.27 tolerated(0.6) possibly_damaging(0.718) TCGA-FR-A726-01 1 171251278 171251278 G A FMO1 Missense_Mutation p.G330E 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 171605009 171605009 C T MYOC 3'UTR 0.30 TCGA-FR-A726-01 1 171621464 171621464 C T MYOC Silent p.E96E 0.26 TCGA-FR-A726-01 1 171759631 171759631 C T METTL13 Missense_Mutation p.P450L 0.44 tolerated(0.08) benign(0.002) TCGA-FR-A726-01 1 172017826 172017826 C T DNM3 Missense_Mutation p.S424F 0.28 deleterious(0.02) possibly_damaging(0.798) TCGA-FR-A726-01 1 172414217 172414217 C T C1orf105 Missense_Mutation p.S9F 0.57 tolerated(0.17) possibly_damaging(0.683) TCGA-FR-A726-01 1 172437755 172437755 C T C1orf105 3'UTR 0.47 TCGA-FR-A726-01 1 172558446 172558446 A T SUCO Missense_Mutation p.L735F 0.25 deleterious(0.04) probably_damaging(0.961) TCGA-FR-A726-01 1 173010467 173010467 C T TNFSF18 3'UTR 0.10 TCGA-FR-A726-01 1 17316257 17316257 G A ATP13A2 Silent p.V846V 0.27 TCGA-FR-A726-01 1 173176351 173176351 G A TNFSF4 5'UTR 0.48 TCGA-FR-A726-01 1 17332266 17332266 G A ATP13A2 Silent p.S6S 0.42 TCGA-FR-A726-01 1 173472451 173472451 C T SLC9C2 Missense_Mutation p.V1109I 0.39 tolerated_low_confidence(0.49) benign(0.001) TCGA-FR-A726-01 1 173526585 173526585 C T SLC9C2 Missense_Mutation p.R370Q 0.26 tolerated(0.1) benign(0.131) TCGA-FR-A726-01 1 173542447 173542447 G A SLC9C2 Missense_Mutation p.S307L 0.29 deleterious(0) possibly_damaging(0.622) TCGA-FR-A726-01 1 173579212 173579212 G A ANKRD45 3'UTR 0.57 TCGA-FR-A726-01 1 173780340 173780340 G T CENPL Nonsense_Mutation p.S33* 0.22 TCGA-FR-A726-01 1 174606513 174606513 G A RABGAP1L Missense_Mutation p.D571N 0.09 deleterious(0.01) possibly_damaging(0.462) TCGA-FR-A726-01 1 175049313 175049313 G A TNN Missense_Mutation p.G267S 0.28 deleterious(0.03) benign(0.271) TCGA-FR-A726-01 1 175067721 175067721 G A TNN Silent p.K703K 0.24 TCGA-FR-A726-01 1 175097836 175097836 C T TNN Missense_Mutation p.P1095L 0.49 deleterious(0.02) probably_damaging(0.958) TCGA-FR-A726-01 1 175323599 175323599 C T TNR Missense_Mutation p.D1104N 0.44 deleterious(0) benign(0.375) TCGA-FR-A726-01 1 175331818 175331818 G A TNR Silent p.I945I 0.48 TCGA-FR-A726-01 1 175360563 175360563 C T TNR Silent p.G456G 0.30 TCGA-FR-A726-01 1 175362925 175362925 G A TNR Silent p.F449F 0.44 TCGA-FR-A726-01 1 175365897 175365897 G A TNR Silent p.S341S 0.22 TCGA-FR-A726-01 1 175375405 175375405 G A TNR Missense_Mutation p.S149L 0.38 deleterious(0) possibly_damaging(0.646) TCGA-FR-A726-01 1 176525233 176525233 G A PAPPA2 5'UTR 0.60 TCGA-FR-A726-01 1 176526025 176526025 G C PAPPA2 Missense_Mutation p.R189S 0.42 tolerated_low_confidence(0.26) benign(0.001) TCGA-FR-A726-01 1 176659653 176659653 G A PAPPA2 Intron 0.38 TCGA-FR-A726-01 1 176668379 176668379 G A PAPPA2 Missense_Mutation p.D964N 0.28 deleterious(0.05) probably_damaging(0.923) TCGA-FR-A726-01 1 176668626 176668626 C T PAPPA2 Missense_Mutation p.S1046F 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-FR-A726-01 1 176681028 176681028 C T PAPPA2 Missense_Mutation p.P1237S 0.43 deleterious(0) benign(0.4) TCGA-FR-A726-01 1 176708828 176708828 C T PAPPA2 Missense_Mutation p.P1289S 0.44 tolerated(0.43) benign(0.007) TCGA-FR-A726-01 1 176708892 176708892 C T PAPPA2 Missense_Mutation p.S1310F 0.49 tolerated(0.07) benign(0.005) TCGA-FR-A726-01 1 176740314 176740314 G A PAPPA2 Silent p.R1571R 0.18 TCGA-FR-A726-01 1 176759027 176759027 C T PAPPA2 Missense_Mutation p.P1600S 0.22 tolerated(0.07) possibly_damaging(0.798) TCGA-FR-A726-01 1 176760613 176760613 G A PAPPA2 Missense_Mutation p.G1672E 0.48 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A726-01 1 176833552 176833552 C T ASTN1 Silent p.L1251L 0.36 TCGA-FR-A726-01 1 176845699 176845699 G A ASTN1 Missense_Mutation p.P1146L 0.37 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 1 176845760 176845760 C T ASTN1 Missense_Mutation p.G1126R 0.08 deleterious(0) possibly_damaging(0.793) TCGA-FR-A726-01 1 176853547 176853547 C T ASTN1 Missense_Mutation p.V1052M 0.43 deleterious(0.03) possibly_damaging(0.748) TCGA-FR-A726-01 1 176863825 176863825 C T ASTN1 Missense_Mutation p.R938Q 0.29 tolerated(0.23) benign(0.025) TCGA-FR-A726-01 1 176934312 176934312 C T ASTN1 Missense_Mutation p.D529N 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A726-01 1 177001678 177001678 C T ASTN1 Missense_Mutation p.G260E 0.47 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-FR-A726-01 1 177001679 177001679 C T ASTN1 Missense_Mutation p.G260R 0.46 tolerated_low_confidence(0.33) probably_damaging(1) TCGA-FR-A726-01 1 177133587 177133587 C A ASTN1 Nonsense_Mutation p.G76* 0.62 TCGA-FR-A726-01 1 177133588 177133588 C T ASTN1 Silent p.P75P 0.62 TCGA-FR-A726-01 1 177226514 177226514 C T BRINP2 Silent p.A221A 0.51 TCGA-FR-A726-01 1 177902430 177902430 C T SEC16B Nonsense_Mutation p.W914* 0.16 TCGA-FR-A726-01 1 177928106 177928106 C T SEC16B Missense_Mutation p.D335N 0.09 deleterious(0.02) probably_damaging(0.914) TCGA-FR-A726-01 1 178489839 178489839 G A TEX35 Missense_Mutation p.E125K 0.43 tolerated(0.09) benign(0.081) TCGA-FR-A726-01 1 178834408 178834408 C T ANGPTL1 Missense_Mutation p.M168I 0.09 tolerated(0.19) benign(0.028) TCGA-FR-A726-01 1 178834569 178834569 C T ANGPTL1 Missense_Mutation p.E115K 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 178834811 178834811 C T ANGPTL1 Missense_Mutation p.R34K 0.52 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 179033437 179033437 C T FAM20B Intron 0.25 TCGA-FR-A726-01 1 17945879 17945879 C T ARHGEF10L Missense_Mutation p.S294L 0.09 tolerated(0.25) benign(0.001) TCGA-FR-A726-01 1 179494559 179494559 G A AXDND1 Missense_Mutation p.E863K 0.16 tolerated(0.55) benign(0.001) TCGA-FR-A726-01 1 179497494 179497494 C T AXDND1 Silent p.L881L 0.31 TCGA-FR-A726-01 1 179631333 179631333 G A TDRD5 Missense_Mutation p.G806E 0.48 tolerated(0.21) benign(0.024) TCGA-FR-A726-01 1 181479640 181479640 C T CACNA1E Silent p.T98T 0.28 TCGA-FR-A726-01 1 181762864 181762864 G A CACNA1E Missense_Mutation p.D1988N 0.50 tolerated(0.07) benign(0.299) TCGA-FR-A726-01 1 181765869 181765869 C T CACNA1E Missense_Mutation p.L2092F 0.28 tolerated(0.7) possibly_damaging(0.879) TCGA-FR-A726-01 1 182025298 182025298 C T ZNF648 3'UTR 0.50 TCGA-FR-A726-01 1 182555513 182555513 G A RNASEL Silent p.F143F 0.23 TCGA-FR-A726-01 1 182615832 182615832 G A RGS8 3'UTR 0.30 TCGA-FR-A726-01 1 182635130 182635130 G A RGS8 Missense_Mutation p.S74F 0.05 deleterious(0) possibly_damaging(0.871) TCGA-FR-A726-01 1 183085729 183085729 C T LAMC1 Missense_Mutation p.P449L 0.42 deleterious(0.03) benign(0.026) TCGA-FR-A726-01 1 183099639 183099639 C T LAMC1 Silent p.I1147I 0.21 TCGA-FR-A726-01 1 183253852 183253852 G A NMNAT2 Silent p.T174T 0.47 TCGA-FR-A726-01 1 183514227 183514227 C T SMG7 Missense_Mutation p.P671L 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A726-01 1 183542397 183542397 G A NCF2 Missense_Mutation p.P178S 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 1 183881293 183881294 - TGG RGL1 In_Frame_Ins p.G583dup 0.37 TCGA-FR-A726-01 1 183933063 183933063 G A COLGALT2 Silent p.N308N 0.24 TCGA-FR-A726-01 1 185278642 185278642 G A IVNS1ABP Intron 0.36 TCGA-FR-A726-01 1 186043946 186043946 C T HMCN1 Missense_Mutation p.S2738L 0.47 probably_damaging(0.993) TCGA-FR-A726-01 1 186086683 186086683 C T HMCN1 Missense_Mutation p.P3926S 0.23 probably_damaging(0.998) TCGA-FR-A726-01 1 186089151 186089151 C T HMCN1 Missense_Mutation p.H4035Y 0.19 possibly_damaging(0.456) TCGA-FR-A726-01 1 186270755 186270755 C A PRG4 Silent p.S77S 0.35 TCGA-FR-A726-01 1 186277029 186277029 G A PRG4 Silent p.K726K 0.24 TCGA-FR-A726-01 1 186280283 186280283 G A PRG4 Missense_Mutation p.G1206E 0.53 unknown(0) TCGA-FR-A726-01 1 18703395 18703395 G A IGSF21 Silent p.R401R 0.31 TCGA-FR-A726-01 1 18704845 18704845 C T IGSF21 3'UTR 0.36 TCGA-FR-A726-01 1 18808180 18808180 G A KLHDC7A Silent p.E235E 0.36 TCGA-FR-A726-01 1 18808821 18808821 C T KLHDC7A Missense_Mutation p.A449V 0.34 tolerated(0.55) benign(0.01) TCGA-FR-A726-01 1 190067402 190067402 G A BRINP3 Silent p.L683L 0.27 TCGA-FR-A726-01 1 190067749 190067749 G A BRINP3 Missense_Mutation p.P567L 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 1 190195368 190195368 C T BRINP3 Missense_Mutation p.G269R 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 190423866 190423866 C T BRINP3 Missense_Mutation p.G52E 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 19166912 19166912 G A TAS1R2 Silent p.I567I 0.27 TCGA-FR-A726-01 1 193149659 193149659 C T B3GALT2 Missense_Mutation p.G345E 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 193149676 193149676 C T B3GALT2 Silent p.L339L 0.44 TCGA-FR-A726-01 1 19473362 19473362 G A UBR4 Missense_Mutation p.L2588F 0.28 possibly_damaging(0.751) TCGA-FR-A726-01 1 19504127 19504127 G A UBR4 Missense_Mutation p.T822I 0.10 benign(0.002) TCGA-FR-A726-01 1 19511732 19511732 G A UBR4 Missense_Mutation p.S600F 0.26 benign(0.02) TCGA-FR-A726-01 1 19578114 19578114 G A MRTO4 5'UTR 0.23 TCGA-FR-A726-01 1 196303014 196303014 C T KCNT2 Missense_Mutation p.E654K 0.39 tolerated(0.12) benign(0.036) TCGA-FR-A726-01 1 196309646 196309646 C T KCNT2 Silent p.L536L 0.40 TCGA-FR-A726-01 1 196648759 196648759 C T CFH Missense_Mutation p.S209L 0.38 tolerated(0.1) benign(0.057) TCGA-FR-A726-01 1 19665977 19665977 G A CAPZB 3'UTR 0.24 TCGA-FR-A726-01 1 196794778 196794778 G A CFHR1 Nonsense_Mutation p.W77* 0.78 TCGA-FR-A726-01 1 196928281 196928281 C T CFHR2 3'UTR 0.52 TCGA-FR-A726-01 1 196952084 196952084 C T CFHR5 Missense_Mutation p.S43F 0.29 tolerated(0.72) benign(0.004) TCGA-FR-A726-01 1 196973938 196973938 G A CFHR5 Missense_Mutation p.R493K 0.52 tolerated(0.15) benign(0.427) TCGA-FR-A726-01 1 197128943 197128943 G A ZBTB41 Missense_Mutation p.S759F 0.41 deleterious(0) benign(0.444) TCGA-FR-A726-01 1 197297986 197297986 G A CRB1 Missense_Mutation p.G169S 0.44 tolerated(0.1) benign(0.364) TCGA-FR-A726-01 1 197390425 197390425 G A CRB1 Silent p.E489E 0.39 TCGA-FR-A726-01 1 197404432 197404432 C T CRB1 Missense_Mutation p.P1147S 0.45 deleterious(0) probably_damaging(0.976) TCGA-FR-A726-01 1 197446962 197446962 G A CRB1 Missense_Mutation p.E1392K 0.33 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 198492664 198492664 C T ATP6V1G3 Missense_Mutation p.E72K 0.21 tolerated(0.74) benign(0.248) TCGA-FR-A726-01 1 198671603 198671603 G A PTPRC Missense_Mutation p.S176N 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-FR-A726-01 1 198685878 198685878 G A PTPRC Silent p.T453T 0.41 TCGA-FR-A726-01 1 198721849 198721849 T A PTPRC Missense_Mutation p.S1153T 0.29 tolerated(0.44) possibly_damaging(0.491) TCGA-FR-A726-01 1 198723533 198723533 C T PTPRC Silent p.F1215F 0.31 TCGA-FR-A726-01 1 200522733 200522733 G A KIF14 Missense_Mutation p.S1577F 0.28 deleterious(0) probably_damaging(0.981) TCGA-FR-A726-01 1 200635532 200635532 G A DDX59 Missense_Mutation p.R113C 0.44 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 200868617 200868617 C T C1orf106 Silent p.V24V 0.28 TCGA-FR-A726-01 1 200869295 200869295 C T C1orf106 Missense_Mutation p.R82C 0.53 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 200878401 200878401 C T C1orf106 Missense_Mutation p.L279F 0.45 tolerated(0.7) benign(0.372) TCGA-FR-A726-01 1 200880589 200880589 C T C1orf106 Missense_Mutation p.S323F 0.07 tolerated(0.11) benign(0.004) TCGA-FR-A726-01 1 200943162 200943162 A T KIF21B 3'UTR 0.42 TCGA-FR-A726-01 1 200960207 200960207 G A KIF21B Missense_Mutation p.P842L 0.26 tolerated(0.08) benign(0.033) TCGA-FR-A726-01 1 201009359 201009359 C T CACNA1S Silent p.K1790K 0.22 TCGA-FR-A726-01 1 201020184 201020184 C T CACNA1S Silent p.G1347G 0.42 TCGA-FR-A726-01 1 201046126 201046126 C T CACNA1S Silent p.G583G 0.41 TCGA-FR-A726-01 1 201046198 201046198 G A CACNA1S Silent p.I559I 0.07 TCGA-FR-A726-01 1 201058395 201058395 G A CACNA1S Silent p.V297V 0.28 TCGA-FR-A726-01 1 201182474 201182474 G A IGFN1 Missense_Mutation p.R2818K 0.29 benign(0.07) TCGA-FR-A726-01 1 201184791 201184791 G A IGFN1 Silent p.R3040R 0.39 TCGA-FR-A726-01 1 201196260 201196260 G A IGFN1 Silent p.K3679K 0.25 TCGA-FR-A726-01 1 201779084 201779084 C T NAV1 Missense_Mutation p.S1471F 0.32 tolerated(0.88) possibly_damaging(0.506) TCGA-FR-A726-01 1 201823803 201823803 C T IPO9 Silent p.G257G 0.39 TCGA-FR-A726-01 1 201823994 201823994 C T IPO9 Missense_Mutation p.S285F 0.44 tolerated(0.06) benign(0.004) TCGA-FR-A726-01 1 201838770 201838770 C T IPO9 Missense_Mutation p.S686F 0.08 deleterious(0) possibly_damaging(0.815) TCGA-FR-A726-01 1 201981503 201981503 C T ELF3 Silent p.I139I 0.25 TCGA-FR-A726-01 1 202418131 202418131 C T PPP1R12B Missense_Mutation p.S561F 0.56 tolerated(0.08) benign(0.265) TCGA-FR-A726-01 1 202843412 202843412 G A RABIF 3'Flank 0.08 TCGA-FR-A726-01 1 202843413 202843413 G T RABIF 3'Flank 0.08 TCGA-FR-A726-01 1 203014972 203014972 C T PPFIA4 Silent p.L288L 0.21 TCGA-FR-A726-01 1 203144486 203144486 C T MYBPH Silent p.Q103Q 0.44 TCGA-FR-A726-01 1 203188804 203188804 C T CHIT1 Silent p.L301L 0.39 TCGA-FR-A726-01 1 203317158 203317158 C T FMOD Missense_Mutation p.D81N 0.45 tolerated(0.13) possibly_damaging(0.672) TCGA-FR-A726-01 1 203800805 203800805 T A ZC3H11A Silent p.V239V 0.26 TCGA-FR-A726-01 1 203820242 203820242 C T ZC3H11A Missense_Mutation p.P722S 0.27 tolerated(0.18) benign(0.068) TCGA-FR-A726-01 1 204095168 204095168 C T SOX13 Missense_Mutation p.S592L 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-FR-A726-01 1 20416366 20416366 C T PLA2G5 Silent p.F90F 0.24 TCGA-FR-A726-01 1 204401418 204401418 G T PIK3C2B Silent p.A1355A 0.43 TCGA-FR-A726-01 1 204937374 204937374 C T NFASC Intron 0.47 TCGA-FR-A726-01 1 204937468 204937468 G A NFASC Silent p.L266L 0.30 TCGA-FR-A726-01 1 204985749 204985749 G A NFASC 3'UTR 0.30 TCGA-FR-A726-01 1 205052653 205052653 G A TMEM81 3'UTR 0.09 TCGA-FR-A726-01 1 205069131 205069131 G A RBBP5 Missense_Mutation p.R272W 0.52 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 1 205272468 205272468 C T NUAK2 3'UTR 0.53 TCGA-FR-A726-01 1 205308926 205308926 T A KLHDC8A Silent p.V129V 0.43 TCGA-FR-A726-01 1 205884176 205884176 G A SLC26A9 Silent p.S836S 0.44 TCGA-FR-A726-01 1 206331034 206331034 G A CTSE Missense_Mutation p.G347E 0.24 tolerated(0.08) benign(0.117) TCGA-FR-A726-01 1 207639899 207639899 C T CR2 Silent p.I29I 0.43 TCGA-FR-A726-01 1 207642049 207642049 C T CR2 Missense_Mutation p.P208L 0.41 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 207646239 207646239 G A CR2 Missense_Mutation p.E565K 0.53 tolerated(0.59) benign(0.005) TCGA-FR-A726-01 1 207696962 207696962 C T CR1 Missense_Mutation p.P165L 0.23 tolerated(0.67) benign(0.066) TCGA-FR-A726-01 1 207697071 207697071 G A CR1 Silent p.G201G 0.20 TCGA-FR-A726-01 1 207737224 207737224 C T CR1 Missense_Mutation p.P1201L 0.25 tolerated(0.4) benign(0.237) TCGA-FR-A726-01 1 207741350 207741350 G A CR1 Silent p.G1378G 0.39 TCGA-FR-A726-01 1 207753715 207753715 C T CR1 Silent p.H1689H 0.48 TCGA-FR-A726-01 1 207785091 207785091 G A CR1 Missense_Mutation p.G2122E 0.50 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 1 207850809 207850809 G A CR1L Missense_Mutation p.G58E 0.48 deleterious(0.04) probably_damaging(0.982) TCGA-FR-A726-01 1 207867846 207867846 C T CR1L Silent p.S204S 0.06 TCGA-FR-A726-01 1 207940957 207940957 C G CD46 Missense_Mutation p.P288A 0.26 tolerated(0.18) benign(0.04) TCGA-FR-A726-01 1 20811827 20811827 C T CAMK2N1 Missense_Mutation p.G16S 0.59 deleterious_low_confidence(0.01) benign(0.151) TCGA-FR-A726-01 1 20915533 20915533 G A CDA 5'UTR 0.25 TCGA-FR-A726-01 1 209778894 209778894 G A CAMK1G Missense_Mutation p.E104K 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A726-01 1 209783237 209783237 G A CAMK1G Missense_Mutation p.E264K 0.37 tolerated(1) benign(0.033) TCGA-FR-A726-01 1 209823371 209823371 G A LAMB3 Missense_Mutation p.L41F 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 209880338 209880338 C T HSD11B1 Missense_Mutation p.L128F 0.25 tolerated(0.66) benign(0.002) TCGA-FR-A726-01 1 209933707 209933707 G A TRAF3IP3 Missense_Mutation p.R108K 0.38 tolerated(0.56) benign(0.004) TCGA-FR-A726-01 1 209952659 209952659 G A TRAF3IP3 Splice_Site p.X418_splice 0.47 TCGA-FR-A726-01 1 21016808 21016808 G A KIF17 Silent p.A418A 0.21 TCGA-FR-A726-01 1 210273376 210273376 C T SYT14 Missense_Mutation p.S290L 0.24 deleterious(0.04) benign(0.039) TCGA-FR-A726-01 1 210411395 210411395 G A SERTAD4 Silent p.E30E 0.21 TCGA-FR-A726-01 1 210857425 210857425 C T KCNH1 Missense_Mutation p.R723Q 0.38 tolerated(0.21) benign(0.02) TCGA-FR-A726-01 1 21103171 21103171 G A HP1BP3 Missense_Mutation p.S90L 0.29 deleterious(0.01) benign(0.022) TCGA-FR-A726-01 1 211486799 211486799 C T RCOR3 Missense_Mutation p.P451S 0.47 tolerated(0.65) benign(0.003) TCGA-FR-A726-01 1 212118177 212118177 G A INTS7 Silent p.V850V 0.44 TCGA-FR-A726-01 1 212792680 212792680 C T ATF3 Intron 0.49 TCGA-FR-A726-01 1 212798324 212798324 G A FAM71A Silent p.G35G 0.41 TCGA-FR-A726-01 1 212799041 212799041 G A FAM71A Silent p.G274G 0.53 TCGA-FR-A726-01 1 212799613 212799613 G A FAM71A Missense_Mutation p.S465N 0.44 tolerated(0.1) benign(0.173) TCGA-FR-A726-01 1 212799680 212799680 G A FAM71A Silent p.R487R 0.19 TCGA-FR-A726-01 1 212799681 212799681 G C FAM71A Missense_Mutation p.D488H 0.19 deleterious(0.01) benign(0.039) TCGA-FR-A726-01 1 212799914 212799914 C T FAM71A Silent p.I565I 0.22 TCGA-FR-A726-01 1 212981151 212981151 C A TATDN3 Nonsense_Mutation p.Y187* 0.48 TCGA-FR-A726-01 1 213188959 213188959 C T ANGEL2 Missense_Mutation p.G19S 0.27 tolerated_low_confidence(0.29) benign(0.003) TCGA-FR-A726-01 1 213414168 213414168 C T RPS6KC1 Missense_Mutation p.P450L 0.39 deleterious(0.02) benign(0.029) TCGA-FR-A726-01 1 213414538 213414538 C T RPS6KC1 Silent p.F573F 0.22 TCGA-FR-A726-01 1 213445947 213445947 C T RPS6KC1 Silent p.T1057T 0.20 TCGA-FR-A726-01 1 214638259 214638259 G A PTPN14 5'UTR 0.46 TCGA-FR-A726-01 1 21562382 21562382 G A ECE1 Silent p.F509F 0.33 TCGA-FR-A726-01 1 215847850 215847850 C T USH2A Missense_Mutation p.R4468K 0.10 benign(0.012) TCGA-FR-A726-01 1 215901598 215901598 G A USH2A Missense_Mutation p.S3947F 0.26 possibly_damaging(0.873) TCGA-FR-A726-01 1 215933057 215933057 G A USH2A Silent p.L3726L 0.45 TCGA-FR-A726-01 1 216251603 216251603 C T USH2A Nonsense_Mutation p.W1800* 0.28 TCGA-FR-A726-01 1 216595260 216595260 G A USH2A Missense_Mutation p.P140L 0.47 possibly_damaging(0.836) TCGA-FR-A726-01 1 218614560 218614560 T A TGFB2 Nonsense_Mutation p.Y395* 0.25 TCGA-FR-A726-01 1 220088985 220088985 G A SLC30A10 Silent p.L422L 0.07 TCGA-FR-A726-01 1 220198503 220198503 G A EPRS Missense_Mutation p.P241S 0.45 deleterious(0) probably_damaging(0.981) TCGA-FR-A726-01 1 220232124 220232124 G A BPNT1 3'UTR 0.56 TCGA-FR-A726-01 1 220275907 220275907 C T IARS2 Missense_Mutation p.P274S 0.45 deleterious(0.05) possibly_damaging(0.646) TCGA-FR-A726-01 1 220870028 220870028 C T C1orf115 Silent p.S128S 0.45 TCGA-FR-A726-01 1 22141033 22141033 G A LDLRAD2 Silent p.R76R 0.30 TCGA-FR-A726-01 1 221879678 221879678 G A DUSP10 Silent p.T314T 0.27 TCGA-FR-A726-01 1 22202157 22202157 G A HSPG2 Silent p.I1089I 0.06 TCGA-FR-A726-01 1 22222440 22222440 G A HSPG2 Silent p.D73D 0.28 TCGA-FR-A726-01 1 22310815 22310815 C T CELA3B Silent p.S211S 0.33 TCGA-FR-A726-01 1 22328190 22328190 C T CELA3A Missense_Mutation p.S8F 0.27 tolerated(0.66) unknown(0) TCGA-FR-A726-01 1 223284451 223284451 G A TLR5 Silent p.S641S 0.10 TCGA-FR-A726-01 1 223284804 223284804 G A TLR5 Missense_Mutation p.H524Y 0.50 deleterious(0.01) possibly_damaging(0.668) TCGA-FR-A726-01 1 223285242 223285242 G A TLR5 Nonsense_Mutation p.Q378* 0.39 TCGA-FR-A726-01 1 223285291 223285291 C T TLR5 Silent p.K361K 0.45 TCGA-FR-A726-01 1 223285308 223285308 A T TLR5 Missense_Mutation p.F356I 0.44 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 1 223285979 223285979 G A TLR5 Missense_Mutation p.S132F 0.29 deleterious(0.01) possibly_damaging(0.757) TCGA-FR-A726-01 1 223568314 223568314 G A C1orf65 Silent p.R499R 0.27 TCGA-FR-A726-01 1 223986340 223986340 G A TP53BP2 Missense_Mutation p.P509S 0.44 deleterious(0.03) possibly_damaging(0.84) TCGA-FR-A726-01 1 224585815 224585815 G A WDR26 Silent p.I586I 0.43 TCGA-FR-A726-01 1 224804654 224804654 C T CNIH3 5'UTR 0.17 TCGA-FR-A726-01 1 2255573 2255573 C T MORN1 Silent p.G420G 0.53 TCGA-FR-A726-01 1 225594413 225594413 G A LBR Missense_Mutation p.P479L 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 225611622 225611622 A C LBR Missense_Mutation p.N52K 0.24 deleterious(0.03) benign(0.328) TCGA-FR-A726-01 1 226420118 226420118 G A LIN9 3'UTR 0.50 TCGA-FR-A726-01 1 226570784 226570784 G A PARP1 Missense_Mutation p.P371L 0.44 tolerated(0.18) benign(0.002) TCGA-FR-A726-01 1 2267928 2267928 C T MORN1 Silent p.Q410Q 0.38 TCGA-FR-A726-01 1 227081821 227081821 C T PSEN2 Missense_Mutation p.L396F 0.34 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 227387341 227387341 G A CDC42BPA Missense_Mutation p.R123C 0.18 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 227968550 227968550 C T SNAP47 3'UTR 0.67 TCGA-FR-A726-01 1 228003840 228003840 G C PRSS38 Silent p.A66A 0.22 TCGA-FR-A726-01 1 228363223 228363223 C T IBA57 3'UTR 0.14 TCGA-FR-A726-01 1 228402588 228402588 G A OBSCN Silent p.G539G 0.48 TCGA-FR-A726-01 1 228444413 228444413 G A OBSCN Silent p.G1549G 0.46 TCGA-FR-A726-01 1 228444418 228444418 G A OBSCN Missense_Mutation p.S1551N 0.30 probably_damaging(0.96) TCGA-FR-A726-01 1 228462004 228462004 C T OBSCN Missense_Mutation p.L2223F 0.50 probably_damaging(0.987) TCGA-FR-A726-01 1 22846693 22846693 C T ZBTB40 Silent p.S991S 0.38 TCGA-FR-A726-01 1 228481888 228481888 G A OBSCN Missense_Mutation p.E4152K 0.07 benign(0.247) TCGA-FR-A726-01 1 228491522 228491522 C T OBSCN Silent p.L4629L 0.26 TCGA-FR-A726-01 1 228491558 228491558 C T OBSCN Missense_Mutation p.R4641C 0.22 probably_damaging(0.973) TCGA-FR-A726-01 1 228492186 228492186 C T OBSCN Missense_Mutation p.R4729C 0.42 benign(0.109) TCGA-FR-A726-01 1 228492875 228492875 G A OBSCN Missense_Mutation p.G4773E 0.47 probably_damaging(1) TCGA-FR-A726-01 1 228492876 228492876 G A OBSCN Silent p.G4773G 0.47 TCGA-FR-A726-01 1 228494623 228494623 G A OBSCN Missense_Mutation p.R4940Q 0.50 benign(0.014) TCGA-FR-A726-01 1 228505286 228505286 G A OBSCN Silent p.V5518V 0.43 TCGA-FR-A726-01 1 228509722 228509722 C T OBSCN Silent p.I6017I 0.53 TCGA-FR-A726-01 1 228547434 228547434 C T OBSCN Intron 0.19 TCGA-FR-A726-01 1 228547453 228547453 C T OBSCN Intron 0.22 TCGA-FR-A726-01 1 228548033 228548033 C T OBSCN Intron 0.50 TCGA-FR-A726-01 1 228550411 228550411 G A OBSCN Missense_Mutation p.E7223K 0.29 benign(0.015) TCGA-FR-A726-01 1 228557773 228557773 G A OBSCN Missense_Mutation p.A7657T 0.43 probably_damaging(0.991) TCGA-FR-A726-01 1 228646233 228646233 C T HIST3H2BB 3'UTR 0.29 TCGA-FR-A726-01 1 229773937 229773937 C T URB2 Missense_Mutation p.P1193S 0.47 tolerated(0.11) probably_damaging(0.999) TCGA-FR-A726-01 1 22987983 22987983 G A C1QB 3'UTR 0.22 TCGA-FR-A726-01 1 230492679 230492679 C T PGBD5 Silent p.Q171Q 0.23 TCGA-FR-A726-01 1 230846140 230846140 G T AGT Missense_Mutation p.H153N 0.06 tolerated(0.11) benign(0.02) TCGA-FR-A726-01 1 230846242 230846242 C T AGT Missense_Mutation p.G119S 0.40 tolerated(0.47) benign(0.003) TCGA-FR-A726-01 1 230923295 230923295 G A CAPN9 Missense_Mutation p.E516K 0.09 deleterious(0.02) possibly_damaging(0.797) TCGA-FR-A726-01 1 230937531 230937531 C T CAPN9 3'Flank 0.40 TCGA-FR-A726-01 1 231069593 231069593 G A TTC13 Silent p.S305S 0.37 TCGA-FR-A726-01 1 231362737 231362737 G A C1orf131 Silent p.A196A 0.30 TCGA-FR-A726-01 1 231830196 231830196 C T DISC1 Missense_Mutation p.P231L 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-FR-A726-01 1 23191381 23191381 G A EPHB2 Missense_Mutation p.A327T 0.33 deleterious(0.01) benign(0.171) TCGA-FR-A726-01 1 23240303 23240303 A T EPHB2 3'UTR 0.33 TCGA-FR-A726-01 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.29 tolerated(0.34) benign(0.034) TCGA-FR-A726-01 1 232581507 232581507 G A SIPA1L2 Missense_Mutation p.P1041S 0.46 tolerated(0.11) probably_damaging(0.999) TCGA-FR-A726-01 1 232650626 232650626 G A SIPA1L2 Missense_Mutation p.H154Y 0.24 tolerated(0.62) possibly_damaging(0.833) TCGA-FR-A726-01 1 232943108 232943108 G A MAP10 Missense_Mutation p.G780E 0.48 tolerated(0.13) benign(0.091) TCGA-FR-A726-01 1 233134944 233134944 G A PCNXL2 Missense_Mutation p.S1837F 0.46 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 233160975 233160975 C T PCNXL2 Missense_Mutation p.G1508S 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 1 233190158 233190158 C T PCNXL2 Missense_Mutation p.G1403R 0.21 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 1 233275578 233275578 C T PCNXL2 Missense_Mutation p.E1181K 0.27 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 233514873 233514873 G A MLK4 Silent p.T707T 0.26 TCGA-FR-A726-01 1 233518431 233518431 G A MLK4 Missense_Mutation p.E1029K 0.37 deleterious(0.03) benign(0.08) TCGA-FR-A726-01 1 233749968 233749968 C T KCNK1 Silent p.H17H 0.48 TCGA-FR-A726-01 1 2338178 2338178 G A PEX10 Missense_Mutation p.R273C 0.21 deleterious(0.02) benign(0.368) TCGA-FR-A726-01 1 234367232 234367232 G A SLC35F3 Missense_Mutation p.G118E 0.30 tolerated(0.39) benign(0.407) TCGA-FR-A726-01 1 234367362 234367362 G A SLC35F3 Silent p.R161R 0.24 TCGA-FR-A726-01 1 234452438 234452438 G A SLC35F3 Missense_Mutation p.V307M 0.49 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 1 234565919 234565919 G A TARBP1 Silent p.F841F 0.24 TCGA-FR-A726-01 1 235383200 235383200 A G ARID4B Silent p.N497N 0.07 TCGA-FR-A726-01 1 235652501 235652501 G A B3GALNT2 Silent p.S111S 0.27 TCGA-FR-A726-01 1 236388415 236388415 C T ERO1LB Silent p.E359E 0.15 TCGA-FR-A726-01 1 236900488 236900488 G A ACTN2 Missense_Mutation p.E284K 0.31 deleterious(0.01) possibly_damaging(0.783) TCGA-FR-A726-01 1 23697631 23697631 G A C1orf213 3'UTR 0.21 TCGA-FR-A726-01 1 237550652 237550652 A T RYR2 Silent p.P216P 0.07 TCGA-FR-A726-01 1 237890389 237890389 G A RYR2 Silent p.V3576V 0.31 TCGA-FR-A726-01 1 237895364 237895364 C T RYR2 Missense_Mutation p.P3652S 0.50 benign(0.001) TCGA-FR-A726-01 1 237947516 237947516 C T RYR2 Silent p.S4168S 0.43 TCGA-FR-A726-01 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.22 TCGA-FR-A726-01 1 238090198 238090198 G A RP11-193H5.1 RNA 0.31 TCGA-FR-A726-01 1 240071544 240071544 C T CHRM3 Missense_Mutation p.L265F 0.15 deleterious(0) possibly_damaging(0.722) TCGA-FR-A726-01 1 240255461 240255461 G A FMN2 Missense_Mutation p.E18K 0.39 unknown(0) TCGA-FR-A726-01 1 240255776 240255776 C T FMN2 Missense_Mutation p.L123F 0.47 unknown(0) TCGA-FR-A726-01 1 240256633 240256633 C T FMN2 Silent p.F408F 0.37 TCGA-FR-A726-01 1 240256692 240256692 C T FMN2 Missense_Mutation p.S428L 0.30 unknown(0) TCGA-FR-A726-01 1 240286627 240286627 G A FMN2 Silent p.T588T 0.40 TCGA-FR-A726-01 1 240370335 240370335 G A FMN2 Silent p.A741A 0.25 TCGA-FR-A726-01 1 240371122 240371122 C T FMN2 Missense_Mutation p.P1004S 0.18 unknown(0) TCGA-FR-A726-01 1 240371337 240371337 C T FMN2 Silent p.P1075P 0.35 TCGA-FR-A726-01 1 240979678 240979678 C T RGS7 Missense_Mutation p.S241N 0.28 tolerated(0.05) probably_damaging(0.971) TCGA-FR-A726-01 1 241032153 241032153 C T RGS7 Splice_Site p.X151_splice 0.35 TCGA-FR-A726-01 1 24171999 24171999 G A FUCA1 3'UTR 0.50 TCGA-FR-A726-01 1 241850858 241850858 C T WDR64 Missense_Mutation p.S302L 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 1 241920714 241920714 C T WDR64 Missense_Mutation p.P624S 0.28 deleterious(0.04) possibly_damaging(0.844) TCGA-FR-A726-01 1 241920715 241920715 C T WDR64 Missense_Mutation p.P624L 0.27 deleterious(0) possibly_damaging(0.792) TCGA-FR-A726-01 1 24201053 24201053 G A CNR2 Missense_Mutation p.S352F 0.25 deleterious(0) possibly_damaging(0.467) TCGA-FR-A726-01 1 242271114 242271114 T G PLD5 Missense_Mutation p.K366N 0.07 tolerated(0.36) possibly_damaging(0.709) TCGA-FR-A726-01 1 242451702 242451702 G A PLD5 Missense_Mutation p.H153Y 0.19 tolerated(1) benign(0.005) TCGA-FR-A726-01 1 2435703 2435703 C T PLCH2 3'UTR 0.35 TCGA-FR-A726-01 1 24384018 24384018 C T MYOM3 Missense_Mutation p.E1384K 0.33 tolerated(0.85) benign(0.038) TCGA-FR-A726-01 1 24408611 24408611 C T MYOM3 Nonsense_Mutation p.W720* 0.39 TCGA-FR-A726-01 1 24413198 24413198 C T MYOM3 Missense_Mutation p.M578I 0.36 tolerated(0.23) benign(0.002) TCGA-FR-A726-01 1 2441534 2441534 G A PANK4 Silent p.I667I 0.22 TCGA-FR-A726-01 1 244218172 244218172 C T ZBTB18 Missense_Mutation p.P366S 0.41 tolerated(0.23) probably_damaging(0.998) TCGA-FR-A726-01 1 24447430 24447430 C T IL22RA1 Nonsense_Mutation p.W530* 0.37 TCGA-FR-A726-01 1 24485575 24485575 G A IFNLR1 Silent p.P256P 0.39 TCGA-FR-A726-01 1 2452207 2452207 G A PANK4 Silent p.F187F 0.37 TCGA-FR-A726-01 1 2452297 2452297 G A PANK4 Silent p.F157F 0.32 TCGA-FR-A726-01 1 245848919 245848919 G A KIF26B Silent p.K878K 0.20 TCGA-FR-A726-01 1 245851937 245851937 G A KIF26B Silent p.G1884G 0.50 TCGA-FR-A726-01 1 246755189 246755189 C T CNST Missense_Mutation p.P109S 0.50 tolerated(0.28) benign(0.014) TCGA-FR-A726-01 1 24685044 24685044 G A STPG1 Missense_Mutation p.P332S 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 247163262 247163262 G A ZNF695 Silent p.L40L 0.19 TCGA-FR-A726-01 1 247587966 247587966 C T NLRP3 Silent p.T407T 0.23 TCGA-FR-A726-01 1 247611916 247611916 C T NLRP3 3'UTR 0.24 TCGA-FR-A726-01 1 247614352 247614352 C T OR2B11 Silent p.R311R 0.47 TCGA-FR-A726-01 1 247614721 247614721 C T OR2B11 Silent p.V188V 0.49 TCGA-FR-A726-01 1 247615282 247615282 C T OR2B11 Translation_Start_Site p.M1? 0.31 deleterious(0.03) possibly_damaging(0.885) TCGA-FR-A726-01 1 247654888 247654888 C T OR2W5 RNA 0.26 TCGA-FR-A726-01 1 247712510 247712510 T C GCSAML Missense_Mutation p.L6P 0.23 deleterious_low_confidence(0.03) probably_damaging(0.955) TCGA-FR-A726-01 1 247712513 247712513 G A GCSAML Missense_Mutation p.R7Q 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-FR-A726-01 1 247751937 247751937 G A OR2G2 Missense_Mutation p.M92I 0.24 deleterious(0.01) benign(0.04) TCGA-FR-A726-01 1 247768892 247768892 G A OR2G3 Missense_Mutation p.G2E 0.17 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 247769747 247769747 C T OR2G3 Missense_Mutation p.P287L 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 247769806 247769806 G A OR2G3 Missense_Mutation p.G307R 0.46 tolerated(0.4) benign(0.008) TCGA-FR-A726-01 1 247769807 247769807 G A OR2G3 Missense_Mutation p.G307E 0.21 tolerated(0.36) benign(0.014) TCGA-FR-A726-01 1 247920823 247920823 C T OR1C1 Missense_Mutation p.D296N 0.52 deleterious(0.03) possibly_damaging(0.522) TCGA-FR-A726-01 1 247978257 247978257 G A OR14A16 Missense_Mutation p.P259S 0.28 deleterious(0.04) benign(0.264) TCGA-FR-A726-01 1 247978452 247978452 C T OR14A16 Missense_Mutation p.E194K 0.29 deleterious(0.04) probably_damaging(0.994) TCGA-FR-A726-01 1 247978629 247978629 C T OR14A16 Missense_Mutation p.D135N 0.25 tolerated(1) benign(0.001) TCGA-FR-A726-01 1 247978630 247978630 C T OR14A16 Missense_Mutation p.M134I 0.25 deleterious(0.05) benign(0.188) TCGA-FR-A726-01 1 248004380 248004380 G A OR11L1 Silent p.I273I 0.18 TCGA-FR-A726-01 1 248004539 248004539 G A OR11L1 Silent p.F220F 0.49 TCGA-FR-A726-01 1 248004661 248004661 C T OR11L1 Missense_Mutation p.D180N 0.23 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.18 deleterious(0.04) benign(0.335) TCGA-FR-A726-01 1 248004797 248004797 G A OR11L1 Silent p.F134F 0.59 TCGA-FR-A726-01 1 248004887 248004887 G A OR11L1 Silent p.F104F 0.33 TCGA-FR-A726-01 1 248039386 248039386 G A TRIM58 Silent p.V352V 0.19 TCGA-FR-A726-01 1 248039677 248039677 C T TRIM58 Silent p.F449F 0.47 TCGA-FR-A726-01 1 248058919 248058919 C T OR2W3 Missense_Mutation p.H11Y 0.39 tolerated(0.08) benign(0.001) TCGA-FR-A726-01 1 248059088 248059088 C T OR2W3 Missense_Mutation p.S67F 0.50 deleterious(0) possibly_damaging(0.82) TCGA-FR-A726-01 1 248084323 248084323 G A OR2T8 Missense_Mutation p.E2K 0.17 tolerated(0.12) benign(0.019) TCGA-FR-A726-01 1 248084779 248084779 G A OR2T8 Missense_Mutation p.G154R 0.22 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 248084964 248084964 C T OR2T8 Silent p.S215S 0.15 TCGA-FR-A726-01 1 248201801 248201801 C T OR2L2 Missense_Mutation p.P78S 0.49 deleterious(0.01) possibly_damaging(0.74) TCGA-FR-A726-01 1 248224609 248224609 C T OR2L3 Missense_Mutation p.P209L 0.04 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 248224624 248224624 C T OR2L3 Missense_Mutation p.S214L 0.24 tolerated(1) benign(0.002) TCGA-FR-A726-01 1 248224681 248224681 G A OR2L3 Missense_Mutation p.R233K 0.26 tolerated(0.1) benign(0.029) TCGA-FR-A726-01 1 248262738 248262738 C T OR2L13 Nonsense_Mutation p.Q21* 0.05 TCGA-FR-A726-01 1 248263091 248263091 G A OR2L13 Missense_Mutation p.M138I 0.27 deleterious(0.02) benign(0.001) TCGA-FR-A726-01 1 248263546 248263546 G A OR2L13 Missense_Mutation p.S290N 0.26 deleterious(0) possibly_damaging(0.834) TCGA-FR-A726-01 1 248263634 248263634 C T OR2L13 3'UTR 0.34 TCGA-FR-A726-01 1 248343330 248343330 C A OR2M2 Missense_Mutation p.L15I 0.29 deleterious(0.01) possibly_damaging(0.578) TCGA-FR-A726-01 1 248366964 248366964 C T OR2M3 Missense_Mutation p.L199F 0.50 deleterious(0.01) benign(0.417) TCGA-FR-A726-01 1 248367169 248367169 C T OR2M3 Missense_Mutation p.S267F 0.42 deleterious(0.01) benign(0.049) TCGA-FR-A726-01 1 248402361 248402361 C T OR2M4 Missense_Mutation p.S44F 0.26 tolerated(0.06) benign(0.002) TCGA-FR-A726-01 1 248436677 248436677 C T OR2T33 Nonsense_Mutation p.W147* 0.14 TCGA-FR-A726-01 1 248437027 248437027 C T OR2T33 Silent p.L30L 0.45 TCGA-FR-A726-01 1 248512109 248512109 C T OR14C36 Silent p.L11L 0.59 TCGA-FR-A726-01 1 248525363 248525363 C T OR2T4 Missense_Mutation p.P161S 0.55 deleterious(0.01) possibly_damaging(0.831) TCGA-FR-A726-01 1 248525658 248525658 G A OR2T4 Missense_Mutation p.G259E 0.06 deleterious(0.01) benign(0.002) TCGA-FR-A726-01 1 248551359 248551359 C T OR2T6 Silent p.F150F 0.53 TCGA-FR-A726-01 1 248569724 248569724 C T OR2T1 Silent p.S143S 0.61 TCGA-FR-A726-01 1 248569976 248569976 C T OR2T1 Silent p.F227F 0.55 TCGA-FR-A726-01 1 248637149 248637149 C T OR2T3 Silent p.P166P 0.49 TCGA-FR-A726-01 1 248637188 248637188 C T OR2T3 Silent p.I179I 0.53 TCGA-FR-A726-01 1 248685049 248685049 C T OR2G6 Silent p.F34F 0.07 TCGA-FR-A726-01 1 248737485 248737485 G A OR2T34 Missense_Mutation p.L192F 0.07 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 248756279 248756279 G A OR2T10 Missense_Mutation p.S264F 0.57 deleterious(0.01) benign(0.248) TCGA-FR-A726-01 1 248756722 248756722 G A OR2T10 Silent p.A116A 0.11 TCGA-FR-A726-01 1 248756817 248756817 G A OR2T10 Nonsense_Mutation p.Q85* 0.09 TCGA-FR-A726-01 1 248789789 248789789 G A OR2T11 Missense_Mutation p.S214F 0.61 deleterious(0) probably_damaging(0.926) TCGA-FR-A726-01 1 248813822 248813822 G A OR2T27 Missense_Mutation p.R122C 0.36 deleterious(0.05) benign(0.028) TCGA-FR-A726-01 1 248814048 248814048 G A OR2T27 Silent p.I46I 0.23 TCGA-FR-A726-01 1 248814117 248814117 G A OR2T27 Silent p.F23F 0.27 TCGA-FR-A726-01 1 24981428 24981428 C T SRRM1 Missense_Mutation p.P375S 0.32 unknown(0) TCGA-FR-A726-01 1 24981429 24981429 C T SRRM1 Missense_Mutation p.P375L 0.32 unknown(0) TCGA-FR-A726-01 1 25712297 25712297 G A RHCE Silent p.S326S 0.31 TCGA-FR-A726-01 1 26357637 26357637 G A EXTL1 Silent p.R372R 0.06 TCGA-FR-A726-01 1 26510713 26510713 C T CNKSR1 Missense_Mutation p.S312F 0.27 deleterious(0.01) benign(0.316) TCGA-FR-A726-01 1 26524815 26524815 C T CATSPER4 Silent p.F239F 0.31 TCGA-FR-A726-01 1 26612380 26612380 C A UBXN11 Missense_Mutation p.K236N 0.29 tolerated(0.09) probably_damaging(0.948) TCGA-FR-A726-01 1 26650699 26650699 G A AIM1L Missense_Mutation p.P687S 0.27 tolerated(0.56) benign(0.017) TCGA-FR-A726-01 1 26751942 26751942 G A LIN28A Missense_Mutation p.G126E 0.32 deleterious(0) possibly_damaging(0.657) TCGA-FR-A726-01 1 26872489 26872489 C T RPS6KA1 Missense_Mutation p.P33L 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-FR-A726-01 1 27121393 27121393 G A PIGV Missense_Mutation p.G290R 0.30 tolerated(0.16) benign(0.072) TCGA-FR-A726-01 1 27631591 27631591 C T WDTC1 Silent p.S580S 0.31 TCGA-FR-A726-01 1 27736338 27736338 G A WASF2 Missense_Mutation p.P396L 0.40 tolerated(0.57) unknown(0) TCGA-FR-A726-01 1 27741418 27741418 G A WASF2 Missense_Mutation p.P193S 0.07 tolerated(0.12) unknown(0) TCGA-FR-A726-01 1 27877183 27877183 G A AHDC1 Missense_Mutation p.P482S 0.34 deleterious(0.01) possibly_damaging(0.803) TCGA-FR-A726-01 1 28599203 28599203 C T SESN2 Missense_Mutation p.L217F 0.34 deleterious(0.02) benign(0.34) TCGA-FR-A726-01 1 28601482 28601482 C T SESN2 Silent p.L389L 0.25 TCGA-FR-A726-01 1 28818192 28818192 C T PHACTR4 Missense_Mutation p.L647F 0.36 tolerated(0.08) possibly_damaging(0.837) TCGA-FR-A726-01 1 29189304 29189304 G A OPRD1 Missense_Mutation p.D210N 0.34 deleterious(0.05) possibly_damaging(0.821) TCGA-FR-A726-01 1 29189522 29189522 C T OPRD1 Silent p.I282I 0.17 TCGA-FR-A726-01 1 2938921 2938921 C T ACTRT2 Missense_Mutation p.A224V 0.36 deleterious(0.02) benign(0.35) TCGA-FR-A726-01 1 29391656 29391656 C T EPB41 Missense_Mutation p.P724S 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A726-01 1 31452973 31452973 G A PUM1 Silent p.I430I 0.38 TCGA-FR-A726-01 1 32084905 32084905 G A HCRTR1 Missense_Mutation p.D38N 0.37 tolerated(0.28) benign(0.003) TCGA-FR-A726-01 1 32096302 32096302 G A PEF1 Missense_Mutation p.A256V 0.33 tolerated(0.06) possibly_damaging(0.607) TCGA-FR-A726-01 1 32205608 32205608 G A BAI2 Missense_Mutation p.R696C 0.35 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A726-01 1 32267306 32267306 C T SPOCD1 Missense_Mutation p.E462K 0.21 deleterious(0) possibly_damaging(0.665) TCGA-FR-A726-01 1 32280373 32280373 C T SPOCD1 Missense_Mutation p.E188K 0.34 tolerated(0.2) benign(0.008) TCGA-FR-A726-01 1 32653624 32653624 G A TXLNA Missense_Mutation p.E223K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 32671259 32671259 G A IQCC 5'UTR 0.33 TCGA-FR-A726-01 1 32671260 32671260 G A IQCC 5'UTR 0.36 TCGA-FR-A726-01 1 3313147 3313147 C T PRDM16 Silent p.P222P 0.33 TCGA-FR-A726-01 1 3328829 3328829 G A PRDM16 Missense_Mutation p.G690R 0.29 deleterious(0.03) benign(0.361) TCGA-FR-A726-01 1 33291774 33291774 C T S100PBP Missense_Mutation p.S25F 0.28 deleterious(0) probably_damaging(0.937) TCGA-FR-A726-01 1 33360299 33360299 G A TMEM54 3'UTR 0.37 TCGA-FR-A726-01 1 34038279 34038279 C T CSMD2 Missense_Mutation p.G2532E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 34049300 34049300 G A CSMD2 Silent p.S2396S 0.26 TCGA-FR-A726-01 1 34083104 34083104 G A CSMD2 Missense_Mutation p.L1941F 0.21 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 34083114 34083114 C T CSMD2 Silent p.P1937P 0.22 TCGA-FR-A726-01 1 34090139 34090139 G A CSMD2 Missense_Mutation p.P1829S 0.27 tolerated(0.17) benign(0.129) TCGA-FR-A726-01 1 3410560 3410560 C T MEGF6 Missense_Mutation p.G1420R 0.46 tolerated(0.32) benign(0.062) TCGA-FR-A726-01 1 34238299 34238299 C T CSMD2 Missense_Mutation p.E533K 0.26 tolerated(0.23) benign(0.309) TCGA-FR-A726-01 1 34312569 34312569 C T CSMD2 Missense_Mutation p.V277I 0.24 tolerated(0.48) benign(0.129) TCGA-FR-A726-01 1 34330148 34330148 C T HMGB4 Missense_Mutation p.S119L 0.40 deleterious(0.02) benign(0.134) TCGA-FR-A726-01 1 34662922 34662922 G A C1orf94 Silent p.E139E 0.48 TCGA-FR-A726-01 1 35223603 35223603 C T GJB5 Silent p.A224A 0.30 TCGA-FR-A726-01 1 35227147 35227147 C T GJB4 Missense_Mutation p.R98C 0.40 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 1 35250351 35250351 C T GJB3 5'UTR 0.19 TCGA-FR-A726-01 1 35320712 35320712 C T SMIM12 3'UTR 0.24 TCGA-FR-A726-01 1 35351114 35351114 G T DLGAP3 Silent p.R627R 0.27 TCGA-FR-A726-01 1 3551779 3551779 G A WRAP73 Missense_Mutation p.S228F 0.28 deleterious(0) possibly_damaging(0.597) TCGA-FR-A726-01 1 36214077 36214077 G A CLSPN Missense_Mutation p.P801S 0.33 tolerated(0.43) benign(0.279) TCGA-FR-A726-01 1 36290969 36290969 C T AGO4 Missense_Mutation p.S121F 0.29 tolerated(0.18) possibly_damaging(0.541) TCGA-FR-A726-01 1 36306778 36306778 C T AGO4 Silent p.F579F 0.29 TCGA-FR-A726-01 1 36379500 36379500 T G AGO1 Missense_Mutation p.V547G 0.12 tolerated(0.12) possibly_damaging(0.86) TCGA-FR-A726-01 1 36564717 36564717 C T COL8A2 Missense_Mutation p.E189K 0.16 tolerated(0.12) unknown(0) TCGA-FR-A726-01 1 36603489 36603489 G A TRAPPC3 Missense_Mutation p.P111S 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 36641854 36641854 C T MAP7D1 Missense_Mutation p.T302M 0.36 probably_damaging(0.999) TCGA-FR-A726-01 1 36642417 36642417 C T MAP7D1 Silent p.L451L 0.28 TCGA-FR-A726-01 1 3670717 3670717 C T CCDC27 Silent p.F118F 0.37 TCGA-FR-A726-01 1 3672074 3672074 T G CCDC27 Missense_Mutation p.W166G 0.26 tolerated(0.06) possibly_damaging(0.803) TCGA-FR-A726-01 1 3679741 3679741 G A CCDC27 Missense_Mutation p.G342S 0.25 tolerated(0.35) benign(0.012) TCGA-FR-A726-01 1 36883802 36883802 C T OSCP1 Missense_Mutation p.E360K 0.25 tolerated(0.19) benign(0.003) TCGA-FR-A726-01 1 36883803 36883803 C T OSCP1 Silent p.T359T 0.25 TCGA-FR-A726-01 1 37267488 37267488 C T GRIK3 Missense_Mutation p.M908I 0.23 tolerated_low_confidence(0.1) benign(0.002) TCGA-FR-A726-01 1 37319298 37319298 C T GRIK3 Missense_Mutation p.R377Q 0.33 tolerated(0.22) benign(0.385) TCGA-FR-A726-01 1 37356632 37356632 G A GRIK3 Nonsense_Mutation p.R61* 0.35 TCGA-FR-A726-01 1 38181735 38181735 C T EPHA10 3'UTR 0.44 TCGA-FR-A726-01 1 38185688 38185688 G A EPHA10 Nonsense_Mutation p.Q819* 0.29 TCGA-FR-A726-01 1 38261496 38261496 C T MANEAL Missense_Mutation p.T213I 0.25 tolerated(0.21) benign(0.361) TCGA-FR-A726-01 1 38511413 38511413 C T POU3F1 Missense_Mutation p.A335T 0.25 deleterious(0.03) probably_damaging(0.956) TCGA-FR-A726-01 1 39340907 39340907 C T GJA9 Silent p.V288V 0.32 TCGA-FR-A726-01 1 39381199 39381199 C T RHBDL2 Intron 0.40 TCGA-FR-A726-01 1 39384743 39384743 T G RHBDL2 Missense_Mutation p.I48L 0.31 tolerated(0.33) benign(0.001) TCGA-FR-A726-01 1 39384744 39384744 C T RHBDL2 Silent p.R47R 0.31 TCGA-FR-A726-01 1 39784188 39784188 C T MACF1 Silent p.L1287L 0.35 TCGA-FR-A726-01 1 39917833 39917833 C T MACF1 Silent p.F4749F 0.07 TCGA-FR-A726-01 1 40030161 40030161 G A PABPC4 Missense_Mutation p.R463C 0.36 tolerated(0.07) possibly_damaging(0.676) TCGA-FR-A726-01 1 40125037 40125037 G A NT5C1A Missense_Mutation p.S288F 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-FR-A726-01 1 40701556 40701556 T G RLF Silent p.V394V 0.10 TCGA-FR-A726-01 1 40703262 40703262 C T RLF Missense_Mutation p.S963F 0.36 tolerated(0.62) probably_damaging(0.979) TCGA-FR-A726-01 1 40704568 40704568 T G RLF Silent p.L1398L 0.36 TCGA-FR-A726-01 1 40758214 40758214 C T ZMPSTE24 Missense_Mutation p.A434V 0.42 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 1 40961897 40961897 T A ZFP69 3'UTR 0.33 TCGA-FR-A726-01 1 41012620 41012620 C T ZNF684 Missense_Mutation p.H209Y 0.38 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 1 42048894 42048894 G A HIVEP3 Silent p.L525L 0.14 TCGA-FR-A726-01 1 42654519 42654519 G A FOXJ3 Missense_Mutation p.L512F 0.32 deleterious(0.01) benign(0.421) TCGA-FR-A726-01 1 43102995 43102995 G A CCDC30 Silent p.K528K 0.42 TCGA-FR-A726-01 1 43200752 43200752 G A CLDN19 3'UTR 0.33 TCGA-FR-A726-01 1 43241027 43241027 C T C1orf50 Missense_Mutation p.P188S 0.35 tolerated_low_confidence(0.32) benign(0.004) TCGA-FR-A726-01 1 43241028 43241028 C T C1orf50 Missense_Mutation p.P188L 0.34 tolerated_low_confidence(0.08) benign(0.079) TCGA-FR-A726-01 1 43672537 43672537 C T WDR65 Silent p.S563S 0.24 TCGA-FR-A726-01 1 43773157 43773157 C T TIE1 Missense_Mutation p.S276L 0.33 tolerated(0.34) benign(0.092) TCGA-FR-A726-01 1 43855558 43855558 C T SZT2 5'Flank 0.32 TCGA-FR-A726-01 1 43904693 43904693 C T SZT2 Silent p.L2184L 0.38 TCGA-FR-A726-01 1 44064476 44064476 C A PTPRF Missense_Mutation p.S735R 0.31 tolerated(0.51) benign(0.005) TCGA-FR-A726-01 1 44064477 44064477 A G PTPRF Missense_Mutation p.K736E 0.30 tolerated(0.12) benign(0.042) TCGA-FR-A726-01 1 45088422 45088422 C T RNF220 Missense_Mutation p.S256F 0.28 tolerated(0.06) benign(0.365) TCGA-FR-A726-01 1 45294039 45294039 G A PTCH2 Silent p.F546F 0.26 TCGA-FR-A726-01 1 45486410 45486410 G A ZSWIM5 Missense_Mutation p.H834Y 0.35 deleterious(0) unknown(0) TCGA-FR-A726-01 1 45516916 45516916 C T ZSWIM5 Nonsense_Mutation p.W421* 0.28 TCGA-FR-A726-01 1 45960755 45960755 G A CCDC163P 3'Flank 0.37 TCGA-FR-A726-01 1 45965950 45965950 G A MMACHC 5'UTR 0.40 TCGA-FR-A726-01 1 46034239 46034239 C T AKR1A1 Missense_Mutation p.P212L 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 46086106 46086106 C T CCDC17 Splice_Site p.X571_splice 0.32 TCGA-FR-A726-01 1 46120481 46120481 G A GPBP1L1 Silent p.L71L 0.31 TCGA-FR-A726-01 1 46476446 46476446 C T MAST2 Silent p.S341S 0.37 TCGA-FR-A726-01 1 46685983 46685983 G A LURAP1 3'UTR 0.18 TCGA-FR-A726-01 1 47284469 47284469 C T CYP4B1 Missense_Mutation p.P508S 0.34 tolerated(0.37) benign(0.007) TCGA-FR-A726-01 1 47398304 47398304 C T CYP4A11 Intron 0.36 TCGA-FR-A726-01 1 47398456 47398456 G A CYP4A11 Silent p.F447F 0.29 TCGA-FR-A726-01 1 47400208 47400208 C T CYP4A11 Missense_Mutation p.A272T 0.23 tolerated(0.21) benign(0.082) TCGA-FR-A726-01 1 47407107 47407107 G A CYP4A11 5'UTR 0.33 TCGA-FR-A726-01 1 47497149 47497149 C T CYP4X1 Missense_Mutation p.L121F 0.33 deleterious(0.01) benign(0.007) TCGA-FR-A726-01 1 47505115 47505115 C T CYP4X1 Silent p.I328I 0.29 TCGA-FR-A726-01 1 47505188 47505188 G A CYP4X1 Missense_Mutation p.G353R 0.40 tolerated(1) possibly_damaging(0.585) TCGA-FR-A726-01 1 47514278 47514278 C T CYP4X1 Missense_Mutation p.P417S 0.32 tolerated(0.17) possibly_damaging(0.589) TCGA-FR-A726-01 1 47515123 47515123 G A CYP4X1 Silent p.E434E 0.23 TCGA-FR-A726-01 1 47534369 47534369 G A CYP4Z1 Missense_Mutation p.G85R 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A726-01 1 47571801 47571801 G A CYP4Z1 Missense_Mutation p.E357K 0.30 deleterious(0.01) benign(0.043) TCGA-FR-A726-01 1 47607282 47607282 G A CYP4A22 Missense_Mutation p.R126Q 0.44 deleterious(0) benign(0.002) TCGA-FR-A726-01 1 4772595 4772595 C T AJAP1 Missense_Mutation p.T222I 0.15 deleterious(0.02) benign(0.013) TCGA-FR-A726-01 1 4832439 4832439 G A AJAP1 Silent p.R339R 0.10 TCGA-FR-A726-01 1 48701532 48701532 G A SLC5A9 Missense_Mutation p.E450K 0.33 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 1 52226432 52226432 C T OSBPL9 Missense_Mutation p.S228F 0.31 deleterious(0.01) possibly_damaging(0.474) TCGA-FR-A726-01 1 52732378 52732378 A T ZFYVE9 Missense_Mutation p.N777I 0.28 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 1 52821277 52821277 C T CC2D1B Intron 0.36 TCGA-FR-A726-01 1 52896886 52896886 G A ZCCHC11 Missense_Mutation p.P1504S 0.35 tolerated(0.28) probably_damaging(0.999) TCGA-FR-A726-01 1 52937736 52937736 G A ZCCHC11 Silent p.G922G 0.28 TCGA-FR-A726-01 1 53372167 53372167 C T ECHDC2 Intron 0.32 TCGA-FR-A726-01 1 53453782 53453782 C T SCP2 Missense_Mutation p.S352L 0.40 deleterious(0) possibly_damaging(0.886) TCGA-FR-A726-01 1 53543377 53543377 C T PODN Silent p.I301I 0.24 TCGA-FR-A726-01 1 53556392 53556392 C T SLC1A7 Missense_Mutation p.G373D 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 53600101 53600101 C T SLC1A7 Missense_Mutation p.E46K 0.30 tolerated(0.15) possibly_damaging(0.7) TCGA-FR-A726-01 1 54562032 54562032 C T TCEANC2 Silent p.Y171Y 0.09 TCGA-FR-A726-01 1 54562033 54562033 C T TCEANC2 Missense_Mutation p.R172W 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 54606898 54606898 G A CDCP2 Silent p.T212T 0.39 TCGA-FR-A726-01 1 55050423 55050423 C G ACOT11 Missense_Mutation p.N43K 0.29 deleterious(0) benign(0.066) TCGA-FR-A726-01 1 55078376 55078376 C T FAM151A Missense_Mutation p.A195T 0.33 tolerated(0.08) benign(0.055) TCGA-FR-A726-01 1 55145689 55145689 C T MROH7 Silent p.A784A 0.28 TCGA-FR-A726-01 1 55181528 55181528 G A TTC4 5'UTR 0.38 TCGA-FR-A726-01 1 55181529 55181529 G A TTC4 5'UTR 0.38 TCGA-FR-A726-01 1 55340874 55340874 G A DHCR24 Silent p.I168I 0.38 TCGA-FR-A726-01 1 55472836 55472836 G A BSND Missense_Mutation p.G147R 0.31 tolerated(0.26) benign(0.117) TCGA-FR-A726-01 1 55474154 55474154 G A BSND Silent p.R272R 0.33 TCGA-FR-A726-01 1 55529209 55529209 C T PCSK9 Silent p.I677I 0.42 TCGA-FR-A726-01 1 55571898 55571898 A C USP24 Missense_Mutation p.F1601V 0.08 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 1 57192207 57192207 C T C1orf168 Missense_Mutation p.E615K 0.31 tolerated(0.07) possibly_damaging(0.487) TCGA-FR-A726-01 1 57202809 57202809 G A C1orf168 Nonsense_Mutation p.Q582* 0.33 TCGA-FR-A726-01 1 57219580 57219580 C T C1orf168 Missense_Mutation p.E387K 0.25 tolerated(0.18) benign(0.133) TCGA-FR-A726-01 1 57257917 57257917 C T C1orf168 Missense_Mutation p.G190E 0.39 tolerated(0.91) benign(0.027) TCGA-FR-A726-01 1 57285022 57285022 G A C1orf168 5'UTR 0.35 TCGA-FR-A726-01 1 57349224 57349224 A T C8A Missense_Mutation p.K242I 0.23 deleterious(0.04) benign(0.011) TCGA-FR-A726-01 1 57399065 57399065 C T C8B Missense_Mutation p.E499K 0.60 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 57411596 57411596 C T C8B Missense_Mutation p.D335N 0.34 deleterious(0.03) benign(0.132) TCGA-FR-A726-01 1 57417853 57417853 C T C8B Silent p.G178G 0.35 TCGA-FR-A726-01 1 57476380 57476380 C T DAB1 Silent p.Q552Q 0.36 TCGA-FR-A726-01 1 57480958 57480958 G A DAB1 Missense_Mutation p.P348S 0.33 deleterious(0.04) benign(0.067) TCGA-FR-A726-01 1 57535083 57535083 C T DAB1 Missense_Mutation p.A205T 0.28 tolerated(0.41) possibly_damaging(0.752) TCGA-FR-A726-01 1 58999839 58999839 G A OMA1 Silent p.F298F 0.42 TCGA-FR-A726-01 1 6196641 6196641 G A CHD5 Missense_Mutation p.P878S 0.31 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 1 6206743 6206743 G A CHD5 Silent p.S524S 0.33 TCGA-FR-A726-01 1 6206744 6206744 G A CHD5 Missense_Mutation p.S524F 0.33 deleterious(0) probably_damaging(0.958) TCGA-FR-A726-01 1 6212561 6212561 C T CHD5 Missense_Mutation p.D261N 0.31 tolerated(0.08) benign(0.191) TCGA-FR-A726-01 1 62190796 62190796 G A TM2D1 Silent p.S61S 0.29 TCGA-FR-A726-01 1 62228577 62228577 C T INADL Missense_Mutation p.P5S 0.30 tolerated(0.17) probably_damaging(0.984) TCGA-FR-A726-01 1 6246833 6246833 G A RPL22 Silent p.L96L 0.40 TCGA-FR-A726-01 1 62732416 62732416 T A KANK4 Silent p.T769T 0.21 TCGA-FR-A726-01 1 62732417 62732417 G A KANK4 Missense_Mutation p.T769I 0.21 deleterious(0.02) benign(0.005) TCGA-FR-A726-01 1 62916199 62916199 G A USP1 Silent p.V635V 0.30 TCGA-FR-A726-01 1 6324584 6324584 G A ACOT7 3'UTR 0.53 TCGA-FR-A726-01 1 64515522 64515522 G A ROR1 Missense_Mutation p.R108Q 0.31 deleterious(0) probably_damaging(0.964) TCGA-FR-A726-01 1 64644200 64644200 C T ROR1 Missense_Mutation p.P826S 0.32 deleterious(0.01) benign(0.073) TCGA-FR-A726-01 1 64680513 64680513 C T UBE2U Missense_Mutation p.P119S 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 65119472 65119472 G A CACHD1 Silent p.R473R 0.37 TCGA-FR-A726-01 1 65858322 65858322 G A DNAJC6 Silent p.L559L 0.40 TCGA-FR-A726-01 1 65876957 65876957 G A DNAJC6 Missense_Mutation p.E887K 0.27 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 1 66062204 66062204 C T LEPR Silent p.S259S 0.41 TCGA-FR-A726-01 1 66067617 66067617 A C LEPR Missense_Mutation p.E459D 0.19 deleterious(0.01) benign(0.02) TCGA-FR-A726-01 1 66098964 66098964 C T LEPR Intron 0.29 TCGA-FR-A726-01 1 6637104 6637104 G A TAS1R1 Missense_Mutation p.G523E 0.26 tolerated(0.83) benign(0.001) TCGA-FR-A726-01 1 6637105 6637105 G A TAS1R1 Silent p.G523G 0.25 TCGA-FR-A726-01 1 66458599 66458599 A T PDE4B Intron 0.17 TCGA-FR-A726-01 1 67306281 67306281 C T WDR78 Silent p.K455K 0.08 TCGA-FR-A726-01 1 67487246 67487246 G A SLC35D1 Silent p.L257L 0.29 TCGA-FR-A726-01 1 67558636 67558636 G A C1orf141 3'UTR 0.30 TCGA-FR-A726-01 1 67561996 67561996 C T C1orf141 Missense_Mutation p.E119K 0.19 tolerated(0.29) probably_damaging(0.953) TCGA-FR-A726-01 1 67672666 67672666 G A IL23R Nonsense_Mutation p.W242* 0.20 TCGA-FR-A726-01 1 67896100 67896100 C T SERBP1 5'Flank 0.33 TCGA-FR-A726-01 1 68151213 68151213 G A GADD45A Silent p.K12K 0.19 TCGA-FR-A726-01 1 70486792 70486792 G A LRRC7 Missense_Mutation p.E471K 0.32 deleterious(0) benign(0.086) TCGA-FR-A726-01 1 70488962 70488962 G A LRRC7 Missense_Mutation p.G529S 0.34 tolerated(0.28) benign(0.039) TCGA-FR-A726-01 1 70541874 70541874 C T LRRC7 Missense_Mutation p.P1411S 0.25 tolerated(0.05) probably_damaging(0.997) TCGA-FR-A726-01 1 74507403 74507403 C T LRRIQ3 Missense_Mutation p.M404I 0.34 tolerated(0.51) benign(0) TCGA-FR-A726-01 1 74833626 74833626 G A FPGT-TNNI3K Silent p.G547G 0.20 TCGA-FR-A726-01 1 74905285 74905285 C T TNNI3K Missense_Mutation p.P765S 0.27 deleterious(0.01) possibly_damaging(0.616) TCGA-FR-A726-01 1 74957800 74957800 G A TNNI3K Missense_Mutation p.S835N 0.34 deleterious_low_confidence(0.04) benign(0.16) TCGA-FR-A726-01 1 75038033 75038033 C T C1orf173 Missense_Mutation p.E1121K 0.37 tolerated(0.23) benign(0.436) TCGA-FR-A726-01 1 75038181 75038181 C T C1orf173 Silent p.R1071R 0.38 TCGA-FR-A726-01 1 75038661 75038661 C T C1orf173 Silent p.L911L 0.31 TCGA-FR-A726-01 1 75038970 75038970 G A C1orf173 Silent p.P808P 0.26 TCGA-FR-A726-01 1 75078435 75078435 G A C1orf173 Silent p.F353F 0.28 TCGA-FR-A726-01 1 75097536 75097536 A T C1orf173 Missense_Mutation p.I227N 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A726-01 1 75139292 75139292 C T C1orf173 5'UTR 0.48 TCGA-FR-A726-01 1 75172025 75172025 G A CRYZ Silent p.I315I 0.28 TCGA-FR-A726-01 1 75679658 75679658 C T SLC44A5 Missense_Mutation p.E607K 0.29 tolerated(1) benign(0.013) TCGA-FR-A726-01 1 77752680 77752680 G A AK5 Missense_Mutation p.E39K 0.32 tolerated(0.05) probably_damaging(0.974) TCGA-FR-A726-01 1 7797385 7797385 C T CAMTA1 Missense_Mutation p.S1138L 0.35 deleterious(0.01) benign(0.23) TCGA-FR-A726-01 1 78267074 78267074 C T FAM73A Missense_Mutation p.S85F 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 78511854 78511854 G A GIPC2 Missense_Mutation p.G26S 0.36 tolerated(0.16) benign(0.007) TCGA-FR-A726-01 1 78546431 78546431 G A GIPC2 Missense_Mutation p.D105N 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 78958521 78958521 T C PTGFR Silent p.F31F 0.41 TCGA-FR-A726-01 1 79358801 79358801 C A ELTD1 Missense_Mutation p.S608I 0.16 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 1 79392687 79392687 C T ELTD1 Missense_Mutation p.D323N 0.28 tolerated(0.53) benign(0.007) TCGA-FR-A726-01 1 79403918 79403918 C T ELTD1 Missense_Mutation p.R148K 0.34 tolerated(0.78) benign(0.006) TCGA-FR-A726-01 1 82372866 82372866 G A LPHN2 Missense_Mutation p.E80K 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-FR-A726-01 1 82408887 82408887 G A LPHN2 Missense_Mutation p.G211E 0.33 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 1 82416166 82416166 G A LPHN2 Missense_Mutation p.G498R 0.29 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 1 82452623 82452623 C T LPHN2 Intron 0.31 TCGA-FR-A726-01 1 8397893 8397893 G A SLC45A1 Missense_Mutation p.G539R 0.29 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 1 8397914 8397914 G A SLC45A1 Missense_Mutation p.D546N 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 1 8420247 8420247 G A RERE Missense_Mutation p.P1107L 0.33 unknown(0) TCGA-FR-A726-01 1 84399413 84399413 G A TTLL7 Missense_Mutation p.H309Y 0.33 deleterious(0.01) possibly_damaging(0.491) TCGA-FR-A726-01 1 85279710 85279710 G A LPAR3 Missense_Mutation p.S294F 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 1 85598755 85598755 G A WDR63 3'UTR 0.38 TCGA-FR-A726-01 1 86591184 86591184 G A COL24A1 Silent p.L279L 0.29 TCGA-FR-A726-01 1 86591213 86591213 G A COL24A1 Missense_Mutation p.P269L 0.35 tolerated(0.16) benign(0.002) TCGA-FR-A726-01 1 87025710 87025710 G A CLCA4 Silent p.K85K 0.26 TCGA-FR-A726-01 1 879376 879376 G A SAMD11 Missense_Mutation p.R630Q 0.22 deleterious(0.04) benign(0.048) TCGA-FR-A726-01 1 89418754 89418754 G A CCBL2 Missense_Mutation p.P316S 0.27 deleterious(0.04) probably_damaging(0.974) TCGA-FR-A726-01 1 89662928 89662928 C T GBP4 Missense_Mutation p.E34K 0.36 tolerated(0.35) benign(0.183) TCGA-FR-A726-01 1 89734500 89734500 C T GBP5 Missense_Mutation p.G77E 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 89834114 89834114 G A GBP6 Missense_Mutation p.E2K 0.32 deleterious(0) benign(0.045) TCGA-FR-A726-01 1 89843664 89843664 T G GBP6 Silent p.G107G 0.37 TCGA-FR-A726-01 1 89847482 89847482 C T GBP6 Silent p.F367F 0.26 TCGA-FR-A726-01 1 89885866 89885866 G A GBP1P1 RNA 0.39 TCGA-FR-A726-01 1 9098064 9098064 G A SLC2A5 Silent p.L398L 0.45 TCGA-FR-A726-01 1 9101801 9101801 G A SLC2A5 Intron 0.35 TCGA-FR-A726-01 1 91851246 91851246 G A HFM1 Nonsense_Mutation p.Q214* 0.30 TCGA-FR-A726-01 1 92446487 92446487 C T BRDT Missense_Mutation p.S501F 0.43 deleterious(0.01) benign(0.005) TCGA-FR-A726-01 1 92712081 92712081 G A GLMN 3'UTR 0.23 TCGA-FR-A726-01 1 934770 934770 G C HES4 Missense_Mutation p.A138G 0.38 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 1 93649039 93649039 G A CCDC18 Missense_Mutation p.E95K 0.28 tolerated(0.08) benign(0.275) TCGA-FR-A726-01 1 94467386 94467386 C T ABCA4 Intron 0.27 TCGA-FR-A726-01 1 94480187 94480187 G A ABCA4 Missense_Mutation p.A1791V 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 94502771 94502771 C T ABCA4 Missense_Mutation p.R1248K 0.29 tolerated(0.18) possibly_damaging(0.828) TCGA-FR-A726-01 1 94643276 94643276 C T ARHGAP29 Missense_Mutation p.D933N 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A726-01 1 95293013 95293013 C T SLC44A3 Intron 0.23 TCGA-FR-A726-01 1 95657226 95657226 C A TMEM56 Missense_Mutation p.F198L 0.32 tolerated(0.64) benign(0.004) TCGA-FR-A726-01 1 95709865 95709865 C T RWDD3 Missense_Mutation p.P62S 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 1 9714036 9714036 G A C1orf200 Missense_Mutation p.P102L 0.29 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FR-A726-01 1 97770838 97770838 C T DPYD Missense_Mutation p.R759Q 0.29 tolerated(0.15) benign(0.063) TCGA-FR-A726-01 1 97771768 97771768 G A DPYD Missense_Mutation p.T715I 0.25 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 1 9781628 9781628 C T PIK3CD Silent p.F646F 0.09 TCGA-FR-A726-01 1 97839148 97839148 C T DPYD Missense_Mutation p.G676E 0.33 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 1 9795114 9795114 A T CLSTN1 Missense_Mutation p.S668T 0.05 tolerated(0.12) benign(0.194) TCGA-FR-A726-01 1 98039485 98039485 G A DPYD Silent p.F390F 0.35 TCGA-FR-A726-01 1 982235 982235 C T AGRN Missense_Mutation p.P1096S 0.38 tolerated(0.3) benign(0.04) TCGA-FR-A726-01 1 99161130 99161130 C T SNX7 Silent p.T232T 0.43 TCGA-FR-A726-01 20 10023936 10023936 G A ANKEF1 Silent p.L171L 0.32 TCGA-FR-A726-01 20 10023937 10023937 G A ANKEF1 Missense_Mutation p.E172K 0.33 deleterious(0.02) possibly_damaging(0.825) TCGA-FR-A726-01 20 10030397 10030397 G A ANKEF1 Missense_Mutation p.E394K 0.38 deleterious(0.02) benign(0.242) TCGA-FR-A726-01 20 10030465 10030465 G A ANKEF1 Silent p.K416K 0.34 TCGA-FR-A726-01 20 10030750 10030750 C T ANKEF1 Silent p.A511A 0.39 TCGA-FR-A726-01 20 10030859 10030859 G A ANKEF1 Missense_Mutation p.G548R 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-FR-A726-01 20 10036279 10036279 C T ANKEF1 Nonsense_Mutation p.R768* 0.23 TCGA-FR-A726-01 20 10273567 10273567 C T SNAP25 Intron 0.31 TCGA-FR-A726-01 20 1115874 1115874 C T PSMF1 Missense_Mutation p.P159L 0.34 tolerated(0.24) benign(0.076) TCGA-FR-A726-01 20 13029636 13029636 C T SPTLC3 Missense_Mutation p.S54L 0.35 tolerated(0.06) benign(0.048) TCGA-FR-A726-01 20 13055055 13055055 C T SPTLC3 Missense_Mutation p.L173F 0.09 tolerated(1) benign(0.019) TCGA-FR-A726-01 20 13071798 13071798 G A SPTLC3 Missense_Mutation p.M225I 0.30 tolerated(0.67) possibly_damaging(0.854) TCGA-FR-A726-01 20 13830850 13830850 A T SEL1L2 Missense_Mutation p.I532N 0.27 tolerated_low_confidence(0.11) benign(0.004) TCGA-FR-A726-01 20 1456621 1456621 G A SIRPB2 3'UTR 0.36 TCGA-FR-A726-01 20 1457793 1457793 C T SIRPB2 Intron 0.38 TCGA-FR-A726-01 20 1514930 1514930 G A SIRPD 3'UTR 0.24 TCGA-FR-A726-01 20 15210607 15210607 C T MACROD2 Missense_Mutation p.P147L 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 1532496 1532496 C T SIRPD Missense_Mutation p.E88K 0.34 tolerated(0.28) benign(0.134) TCGA-FR-A726-01 20 1532508 1532508 G A SIRPD Missense_Mutation p.P84S 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 20 15918183 15918183 G A MACROD2 Missense_Mutation p.D301N 0.35 deleterious_low_confidence(0.05) benign(0.025) TCGA-FR-A726-01 20 1610902 1610902 G A SIRPG Missense_Mutation p.P378S 0.17 tolerated(0.09) benign(0.007) TCGA-FR-A726-01 20 1617025 1617025 C T SIRPG Missense_Mutation p.G186E 0.27 deleterious(0.03) possibly_damaging(0.792) TCGA-FR-A726-01 20 1617026 1617026 C T SIRPG Missense_Mutation p.G186R 0.26 tolerated(0.08) possibly_damaging(0.589) TCGA-FR-A726-01 20 16253940 16253940 G A KIF16B Silent p.F489F 0.27 TCGA-FR-A726-01 20 1638318 1638318 G A SIRPG Silent p.L15L 0.23 TCGA-FR-A726-01 20 16729634 16729634 G A OTOR Missense_Mutation p.E80K 0.23 tolerated(0.15) possibly_damaging(0.866) TCGA-FR-A726-01 20 17640885 17640885 G C RRBP1 Missense_Mutation p.P90A 0.32 tolerated(0.29) possibly_damaging(0.758) TCGA-FR-A726-01 20 17640960 17640960 T C RRBP1 Missense_Mutation p.T65A 0.41 tolerated(0.61) possibly_damaging(0.874) TCGA-FR-A726-01 20 18142532 18142532 C T CSRP2BP Missense_Mutation p.P251S 0.39 tolerated(0.32) benign(0.019) TCGA-FR-A726-01 20 18142722 18142722 C T CSRP2BP Missense_Mutation p.S314F 0.36 deleterious(0) probably_damaging(0.959) TCGA-FR-A726-01 20 18435991 18435991 C T DZANK1 Missense_Mutation p.S93N 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 1902120 1902120 C T SIRPA Silent p.S172S 0.31 TCGA-FR-A726-01 20 19261725 19261725 G A SLC24A3 Missense_Mutation p.E89K 0.38 tolerated(0.27) benign(0.075) TCGA-FR-A726-01 20 1961542 1961542 G A PDYN Silent p.S64S 0.28 TCGA-FR-A726-01 20 19673922 19673922 G A SLC24A3 Silent p.V448V 0.39 TCGA-FR-A726-01 20 19677466 19677466 G A SLC24A3 Missense_Mutation p.G506E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 20349230 20349230 A C INSM1 Missense_Mutation p.S107R 0.43 deleterious(0.01) benign(0.307) TCGA-FR-A726-01 20 20505537 20505537 G A RALGAPA2 Silent p.L1233L 0.42 TCGA-FR-A726-01 20 21369978 21369978 C T XRN2 3'UTR 0.22 TCGA-FR-A726-01 20 21493000 21493000 T G NKX2-2 Missense_Mutation p.K128T 0.17 deleterious(0.04) benign(0.422) TCGA-FR-A726-01 20 22563485 22563485 G A FOXA2 Missense_Mutation p.P132L 0.30 deleterious(0) possibly_damaging(0.81) TCGA-FR-A726-01 20 2291673 2291673 G A TGM3 Missense_Mutation p.M146I 0.29 deleterious(0.02) possibly_damaging(0.517) TCGA-FR-A726-01 20 23065045 23065045 G A CD93 Silent p.L595L 0.34 TCGA-FR-A726-01 20 23065129 23065129 G A CD93 Silent p.S567S 0.25 TCGA-FR-A726-01 20 23065922 23065922 C T CD93 Missense_Mutation p.R303Q 0.29 deleterious(0.04) probably_damaging(0.976) TCGA-FR-A726-01 20 23433277 23433277 C T CST11 Missense_Mutation p.E58K 0.41 tolerated(0.35) benign(0.07) TCGA-FR-A726-01 20 23472403 23472403 G A CST8 Silent p.R33R 0.09 TCGA-FR-A726-01 20 23476595 23476595 C T CST8 3'UTR 0.37 TCGA-FR-A726-01 20 23545411 23545411 A G CST9L 3'UTR 0.50 TCGA-FR-A726-01 20 23545595 23545595 C T CST9L Missense_Mutation p.G145E 0.30 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 20 23728477 23728477 C T CST1 Silent p.V134V 0.39 TCGA-FR-A726-01 20 2377177 2377177 G A TGM6 Silent p.E150E 0.34 TCGA-FR-A726-01 20 2413302 2413302 G A TGM6 3'UTR 0.32 TCGA-FR-A726-01 20 24524035 24524035 C T SYNDIG1 Missense_Mutation p.S101F 0.29 tolerated(0.06) benign(0.265) TCGA-FR-A726-01 20 25206189 25206189 C T ENTPD6 Missense_Mutation p.H471Y 0.34 tolerated(0.15) possibly_damaging(0.652) TCGA-FR-A726-01 20 25287530 25287530 A T ABHD12 Missense_Mutation p.F297I 0.20 deleterious(0.03) probably_damaging(0.983) TCGA-FR-A726-01 20 2542548 2542548 C T TMC2 Missense_Mutation p.S149F 0.33 deleterious(0) possibly_damaging(0.678) TCGA-FR-A726-01 20 25477345 25477345 C T NINL Missense_Mutation p.D422N 0.07 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 20 25477346 25477346 C T NINL Missense_Mutation p.M421I 0.07 deleterious(0.01) benign(0.053) TCGA-FR-A726-01 20 2577944 2577944 G A TMC2 Silent p.K408K 0.25 TCGA-FR-A726-01 20 257922 257922 G A C20orf96 Missense_Mutation p.S223F 0.25 tolerated(0.1) probably_damaging(0.971) TCGA-FR-A726-01 20 2633988 2633988 C T NOP56 Missense_Mutation p.P53S 0.29 deleterious(0) possibly_damaging(0.897) TCGA-FR-A726-01 20 2641388 2641388 G A IDH3B Silent p.I162I 0.36 TCGA-FR-A726-01 20 2644840 2644840 C T IDH3B 5'UTR 0.33 TCGA-FR-A726-01 20 2844864 2844864 C T VPS16 Missense_Mutation p.L551F 0.18 deleterious(0.02) possibly_damaging(0.5) TCGA-FR-A726-01 20 29847270 29847270 G A DEFB115 Nonsense_Mutation p.W34* 0.33 TCGA-FR-A726-01 20 29966176 29966176 C T DEFB118 3'Flank 0.34 TCGA-FR-A726-01 20 29977020 29977020 C T DEFB119 Missense_Mutation p.M25I 0.28 tolerated(0.21) benign(0.06) TCGA-FR-A726-01 20 30409458 30409458 C T MYLK2 Silent p.F230F 0.23 TCGA-FR-A726-01 20 30432520 30432520 G A FOXS1 Missense_Mutation p.P276S 0.39 tolerated(0.19) benign(0.03) TCGA-FR-A726-01 20 30432521 30432521 G A FOXS1 Silent p.S275S 0.39 TCGA-FR-A726-01 20 30556347 30556347 G A XKR7 Silent p.P123P 0.47 TCGA-FR-A726-01 20 30602742 30602742 C T CCM2L Silent p.P22P 0.30 TCGA-FR-A726-01 20 30822510 30822510 C T POFUT1 3'UTR 0.10 TCGA-FR-A726-01 20 31368230 31368230 C T DNMT3B Missense_Mutation p.S34L 0.37 deleterious_low_confidence(0) benign(0.102) TCGA-FR-A726-01 20 31376689 31376689 C T DNMT3B Silent p.L228L 0.22 TCGA-FR-A726-01 20 31389227 31389227 C T DNMT3B Silent p.L714L 0.33 TCGA-FR-A726-01 20 31395581 31395581 C T DNMT3B Missense_Mutation p.P812S 0.07 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 20 3147606 3147606 G A LZTS3 Silent p.F68F 0.32 TCGA-FR-A726-01 20 31608349 31608349 G A BPIFB2 Missense_Mutation p.D384N 0.24 tolerated(0.33) benign(0.052) TCGA-FR-A726-01 20 31761975 31761975 G A BPIFA2 Silent p.A131A 0.33 TCGA-FR-A726-01 20 31763353 31763353 C T BPIFA2 Missense_Mutation p.S184F 0.26 deleterious(0) probably_damaging(0.942) TCGA-FR-A726-01 20 31967305 31967305 G A CDK5RAP1 Missense_Mutation p.R357C 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 32298409 32298409 G A PXMP4 Silent p.F109F 0.27 TCGA-FR-A726-01 20 32336799 32336799 G C ZNF341 Missense_Mutation p.S137T 0.30 deleterious(0.01) benign(0.248) TCGA-FR-A726-01 20 33203920 33203920 A G PIGU Missense_Mutation p.F185L 0.27 tolerated(0.25) benign(0.083) TCGA-FR-A726-01 20 33329922 33329922 G A NCOA6 Missense_Mutation p.P1380S 0.32 benign(0.004) TCGA-FR-A726-01 20 33330180 33330180 G A NCOA6 Missense_Mutation p.P1294S 0.30 possibly_damaging(0.827) TCGA-FR-A726-01 20 33330663 33330663 G A NCOA6 Missense_Mutation p.P1133S 0.32 benign(0.023) TCGA-FR-A726-01 20 33345246 33345246 G A NCOA6 Silent p.F435F 0.33 TCGA-FR-A726-01 20 33451155 33451155 G A GGT7 Silent p.T122T 0.33 TCGA-FR-A726-01 20 33530469 33530469 G A GSS Intron 0.37 TCGA-FR-A726-01 20 33586527 33586527 G A MYH7B Silent p.K1375K 0.32 TCGA-FR-A726-01 20 33764602 33764602 G A PROCR Missense_Mutation p.G235R 0.12 deleterious(0.01) possibly_damaging(0.646) TCGA-FR-A726-01 20 33874500 33874500 C T FAM83C Silent p.Q694Q 0.34 TCGA-FR-A726-01 20 33875236 33875236 G A FAM83C Missense_Mutation p.S449F 0.34 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-FR-A726-01 20 33879756 33879756 G A FAM83C Missense_Mutation p.P118S 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 34021982 34021982 C T GDF5 Missense_Mutation p.D411N 0.37 deleterious(0) probably_damaging(0.937) TCGA-FR-A726-01 20 34144197 34144197 C T ERGIC3 Intron 0.56 TCGA-FR-A726-01 20 34145214 34145214 C T ERGIC3 Missense_Mutation p.S369L 0.34 deleterious(0) benign(0.396) TCGA-FR-A726-01 20 34242392 34242392 G A RBM12 Missense_Mutation p.P285S 0.32 tolerated(0.45) benign(0.046) TCGA-FR-A726-01 20 34806797 34806797 G A EPB41L1 Splice_Site p.X757_splice 0.38 TCGA-FR-A726-01 20 35219948 35219948 C T TGIF2 3'UTR 0.33 TCGA-FR-A726-01 20 35242356 35242356 C T SLA2 Silent p.E233E 0.28 TCGA-FR-A726-01 20 35262954 35262954 G A SLA2 Missense_Mutation p.P44S 0.29 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 20 35437003 35437003 G A SOGA1 Silent p.F909F 0.29 TCGA-FR-A726-01 20 35507514 35507514 G A TLDC2 Missense_Mutation p.G87D 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 3557592 3557592 G A ATRN Silent p.L767L 0.27 TCGA-FR-A726-01 20 35766242 35766242 G A MROH8 Silent p.F567F 0.31 TCGA-FR-A726-01 20 35842220 35842220 C T RPN2 Silent p.F348F 0.29 TCGA-FR-A726-01 20 3649545 3649545 C T ADAM33 3'UTR 0.30 TCGA-FR-A726-01 20 3653220 3653220 G A ADAM33 Silent p.A455A 0.43 TCGA-FR-A726-01 20 3655425 3655425 C T ADAM33 Silent p.G135G 0.31 TCGA-FR-A726-01 20 36560104 36560104 C T VSTM2L Silent p.S63S 0.40 TCGA-FR-A726-01 20 3670649 3670649 G A SIGLEC1 Silent p.V1618V 0.34 TCGA-FR-A726-01 20 3672145 3672145 G A SIGLEC1 Missense_Mutation p.T1478I 0.33 tolerated(0.06) possibly_damaging(0.906) TCGA-FR-A726-01 20 3673194 3673194 G A SIGLEC1 Missense_Mutation p.S1335F 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 3675535 3675535 G A SIGLEC1 Nonsense_Mutation p.Q907* 0.19 TCGA-FR-A726-01 20 36766626 36766626 C T TGM2 Missense_Mutation p.E502K 0.32 tolerated(0.13) benign(0.1) TCGA-FR-A726-01 20 36766627 36766627 C T TGM2 Silent p.E501E 0.29 TCGA-FR-A726-01 20 3678746 3678746 C T SIGLEC1 Silent p.L607L 0.28 TCGA-FR-A726-01 20 3682012 3682012 G A SIGLEC1 Missense_Mutation p.S502F 0.29 deleterious(0) probably_damaging(0.981) TCGA-FR-A726-01 20 36870218 36870218 G A KIAA1755 Silent p.F105F 0.30 TCGA-FR-A726-01 20 368771 368771 C T TRIB3 Silent p.P39P 0.30 TCGA-FR-A726-01 20 37194106 37194106 C T RALGAPB Missense_Mutation p.P1268S 0.29 tolerated(0.57) benign(0.003) TCGA-FR-A726-01 20 3734662 3734662 G A C20orf27 3'UTR 0.39 TCGA-FR-A726-01 20 37464670 37464670 G A PPP1R16B Silent p.L34L 0.35 TCGA-FR-A726-01 20 37464782 37464782 C T PPP1R16B Silent p.L72L 0.29 TCGA-FR-A726-01 20 37546833 37546833 G A PPP1R16B Missense_Mutation p.E410K 0.33 tolerated(0.47) benign(0.011) TCGA-FR-A726-01 20 37580543 37580543 G A FAM83D Missense_Mutation p.E410K 0.42 tolerated(0.48) benign(0.009) TCGA-FR-A726-01 20 3760420 3760420 G A SPEF1 Missense_Mutation p.L38F 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A726-01 20 39742679 39742679 C T TOP1 Missense_Mutation p.R508C 0.33 deleterious(0.02) possibly_damaging(0.818) TCGA-FR-A726-01 20 39987561 39987561 C T LPIN3 3'UTR 0.32 TCGA-FR-A726-01 20 39991438 39991438 C T EMILIN3 Silent p.E257E 0.30 TCGA-FR-A726-01 20 40034123 40034123 G A CHD6 Missense_Mutation p.L2420F 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 40084453 40084453 G A CHD6 Missense_Mutation p.S999F 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 40709466 40709466 G A PTPRT 3'UTR 0.21 TCGA-FR-A726-01 20 41306519 41306519 C T PTPRT Silent p.R380R 0.32 TCGA-FR-A726-01 20 41420033 41420033 C T PTPRT Silent p.K96K 0.39 TCGA-FR-A726-01 20 42331475 42331475 C T MYBL2 Silent p.L433L 0.27 TCGA-FR-A726-01 20 42355288 42355288 C T GTSF1L Missense_Mutation p.R16Q 0.07 tolerated(0.11) probably_damaging(0.999) TCGA-FR-A726-01 20 42635228 42635228 C T TOX2 Silent p.I69I 0.34 TCGA-FR-A726-01 20 42694581 42694581 C T TOX2 Missense_Mutation p.P397L 0.25 deleterious(0.02) possibly_damaging(0.523) TCGA-FR-A726-01 20 42788508 42788508 C T JPH2 Missense_Mutation p.E307K 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 20 42789028 42789028 G A JPH2 Silent p.F133F 0.42 TCGA-FR-A726-01 20 43150590 43150590 C T SERINC3 Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 20 43384647 43384647 C T RIMS4 3'UTR 0.31 TCGA-FR-A726-01 20 43703711 43703711 C T STK4 Missense_Mutation p.P453L 0.34 tolerated(0.28) benign(0.056) TCGA-FR-A726-01 20 43726845 43726845 C T KCNS1 Missense_Mutation p.E190K 0.18 deleterious(0.02) benign(0.08) TCGA-FR-A726-01 20 43752574 43752574 C T WFDC12 Silent p.K83K 0.49 TCGA-FR-A726-01 20 43835703 43835703 C T SEMG1 Silent p.P3P 0.23 TCGA-FR-A726-01 20 43836084 43836084 C T SEMG1 Missense_Mutation p.S49F 0.37 tolerated(0.46) benign(0.022) TCGA-FR-A726-01 20 43851923 43851923 C T SEMG2 Silent p.S550S 0.34 TCGA-FR-A726-01 20 43933367 43933367 G A MATN4 Silent p.F48F 0.21 TCGA-FR-A726-01 20 43945558 43945558 G A RBPJL Missense_Mutation p.E505K 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A726-01 20 44439732 44439732 C T DNTTIP1 Silent p.S296S 0.43 TCGA-FR-A726-01 20 44453173 44453173 C T TNNC2 Missense_Mutation p.E54K 0.32 tolerated(0.16) possibly_damaging(0.663) TCGA-FR-A726-01 20 44505869 44505869 C T ZSWIM3 Silent p.H224H 0.26 TCGA-FR-A726-01 20 44515432 44515432 C T SPATA25 Silent p.P136P 0.35 TCGA-FR-A726-01 20 44582525 44582525 G A ZNF335 Silent p.S835S 0.18 TCGA-FR-A726-01 20 44582526 44582526 G A ZNF335 Missense_Mutation p.S835F 0.18 deleterious(0) possibly_damaging(0.498) TCGA-FR-A726-01 20 44596876 44596876 C T ZNF335 Intron 0.34 TCGA-FR-A726-01 20 44639617 44639617 C T MMP9 Missense_Mutation p.P193S 0.24 tolerated(0.1) benign(0.408) TCGA-FR-A726-01 20 44670060 44670060 G A SLC12A5 Missense_Mutation p.R339Q 0.33 tolerated(0.55) benign(0) TCGA-FR-A726-01 20 44685167 44685167 C T SLC12A5 Missense_Mutation p.S1048F 0.24 deleterious(0.01) benign(0.088) TCGA-FR-A726-01 20 44839092 44839092 G A CDH22 Silent p.I380I 0.32 TCGA-FR-A726-01 20 44879721 44879721 C T CDH22 Silent p.V71V 0.25 TCGA-FR-A726-01 20 44978874 44978874 G A SLC35C2 3'UTR 0.29 TCGA-FR-A726-01 20 45129940 45129940 C T ZNF334 Missense_Mutation p.E680K 0.27 deleterious_low_confidence(0) benign(0.014) TCGA-FR-A726-01 20 45129941 45129941 C T ZNF334 Silent p.K679K 0.36 TCGA-FR-A726-01 20 45354539 45354539 G A SLC2A10 Missense_Mutation p.M288I 0.32 tolerated(0.29) benign(0.014) TCGA-FR-A726-01 20 45607071 45607071 G A EYA2 Intron 0.44 TCGA-FR-A726-01 20 45644851 45644851 C T EYA2 Silent p.S110S 0.26 TCGA-FR-A726-01 20 45771711 45771711 C T EYA2 Missense_Mutation p.S301F 0.35 tolerated(0.52) probably_damaging(0.968) TCGA-FR-A726-01 20 45771712 45771712 C T EYA2 Silent p.S301S 0.35 TCGA-FR-A726-01 20 45874893 45874893 C T ZMYND8 Missense_Mutation p.E715K 0.07 tolerated_low_confidence(0.08) benign(0.011) TCGA-FR-A726-01 20 46268712 46268712 C T NCOA3 Silent p.G999G 0.30 TCGA-FR-A726-01 20 46386072 46386072 G A SULF2 Silent p.S12S 0.25 TCGA-FR-A726-01 20 47244416 47244416 C T PREX1 Missense_Mutation p.D1618N 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 20 47297827 47297827 C T PREX1 Missense_Mutation p.E461K 0.23 deleterious(0.04) possibly_damaging(0.845) TCGA-FR-A726-01 20 47305327 47305327 A T PREX1 Missense_Mutation p.M401K 0.30 deleterious(0) benign(0.005) TCGA-FR-A726-01 20 47351148 47351148 G A PREX1 Missense_Mutation p.H152Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 20 47614923 47614923 C T ARFGEF2 Missense_Mutation p.P1105S 0.39 tolerated(0.47) benign(0.004) TCGA-FR-A726-01 20 4764804 4764804 G A RASSF2 3'UTR 0.25 TCGA-FR-A726-01 20 47990833 47990833 C T KCNB1 Missense_Mutation p.E422K 0.30 tolerated(0.11) probably_damaging(0.997) TCGA-FR-A726-01 20 48524734 48524734 G A SPATA2 Silent p.N98N 0.34 TCGA-FR-A726-01 20 4855285 4855285 G A SLC23A2 Silent p.L294L 0.34 TCGA-FR-A726-01 20 49214154 49214154 C T FAM65C Missense_Mutation p.D581N 0.24 deleterious(0.01) possibly_damaging(0.691) TCGA-FR-A726-01 20 49214155 49214155 C T FAM65C Silent p.L580L 0.24 TCGA-FR-A726-01 20 49225879 49225879 G A FAM65C Silent p.I193I 0.31 TCGA-FR-A726-01 20 49493208 49493208 G A BCAS4 3'UTR 0.30 TCGA-FR-A726-01 20 49508627 49508627 G A ADNP Missense_Mutation p.S875F 0.30 tolerated_low_confidence(0.47) probably_damaging(0.986) TCGA-FR-A726-01 20 50007865 50007865 G A NFATC2 3'UTR 0.27 TCGA-FR-A726-01 20 50049163 50049163 G A NFATC2 Silent p.L721L 0.32 TCGA-FR-A726-01 20 50139894 50139894 G T NFATC2 Missense_Mutation p.P296T 0.31 tolerated(1) benign(0.005) TCGA-FR-A726-01 20 50140616 50140616 G A NFATC2 Missense_Mutation p.P55L 0.31 tolerated(0.07) possibly_damaging(0.77) TCGA-FR-A726-01 20 50290799 50290799 G A ATP9A Silent p.A310A 0.29 TCGA-FR-A726-01 20 50408325 50408325 C T SALL4 Missense_Mutation p.E233K 0.33 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 20 50408389 50408389 G A SALL4 Silent p.I211I 0.08 TCGA-FR-A726-01 20 51870642 51870642 C T TSHZ2 Silent p.F215F 0.32 TCGA-FR-A726-01 20 51870820 51870820 C T TSHZ2 Silent p.L275L 0.09 TCGA-FR-A726-01 20 51872435 51872435 C T TSHZ2 Missense_Mutation p.S813F 0.28 deleterious(0) possibly_damaging(0.701) TCGA-FR-A726-01 20 52774648 52774648 C T CYP24A1 Missense_Mutation p.G405S 0.13 deleterious(0.01) possibly_damaging(0.656) TCGA-FR-A726-01 20 52831931 52831931 C T PFDN4 Silent p.F75F 0.40 TCGA-FR-A726-01 20 5283195 5283195 G A PROKR2 Nonsense_Mutation p.Q216* 0.38 TCGA-FR-A726-01 20 5283319 5283319 G A PROKR2 Silent p.I174I 0.22 TCGA-FR-A726-01 20 5294925 5294925 C T PROKR2 Missense_Mutation p.G31S 0.33 tolerated(1) benign(0.001) TCGA-FR-A726-01 20 55012399 55012399 G A CASS4 Silent p.T72T 0.30 TCGA-FR-A726-01 20 55027632 55027632 G A CASS4 Missense_Mutation p.R467K 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 55093443 55093443 C T RTFDC1 3'UTR 0.44 TCGA-FR-A726-01 20 55100930 55100930 C T FAM209A Missense_Mutation p.P107L 0.36 tolerated(0.1) benign(0.001) TCGA-FR-A726-01 20 55206393 55206393 C T TFAP2C Missense_Mutation p.P61S 0.11 deleterious(0.03) benign(0.255) TCGA-FR-A726-01 20 55758781 55758781 C T BMP7 Missense_Mutation p.A319T 0.41 tolerated(0.71) benign(0.007) TCGA-FR-A726-01 20 55758782 55758782 C T BMP7 Silent p.V318V 0.42 TCGA-FR-A726-01 20 56078626 56078626 C T CTCFL Missense_Mutation p.G569E 0.32 tolerated(0.43) benign(0.01) TCGA-FR-A726-01 20 56087690 56087690 C T CTCFL Silent p.E483E 0.34 TCGA-FR-A726-01 20 56093924 56093924 C T CTCFL Missense_Mutation p.D317N 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 20 56137166 56137166 C T PCK1 Silent p.I88I 0.30 TCGA-FR-A726-01 20 56140527 56140527 C T PCK1 Silent p.F512F 0.34 TCGA-FR-A726-01 20 56140881 56140881 C T PCK1 3'UTR 0.30 TCGA-FR-A726-01 20 56191403 56191403 C T ZBP1 Missense_Mutation p.M52I 0.30 deleterious(0.01) benign(0.322) TCGA-FR-A726-01 20 56227482 56227482 G A PMEPA1 Missense_Mutation p.P164L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 20 56928386 56928386 G T RAB22A Missense_Mutation p.D86Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 20 57415471 57415471 G A RP4-806M20.3 5'Flank 0.37 TCGA-FR-A726-01 20 57415781 57415781 C T RP4-806M20.3 5'Flank 0.55 TCGA-FR-A726-01 20 57766789 57766789 G A ZNF831 Missense_Mutation p.E239K 0.30 tolerated(0.44) benign(0.006) TCGA-FR-A726-01 20 57767677 57767677 C T ZNF831 Missense_Mutation p.P535S 0.48 tolerated(0.1) possibly_damaging(0.813) TCGA-FR-A726-01 20 57767921 57767921 C T ZNF831 Missense_Mutation p.S616F 0.32 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 20 57770972 57770972 G A ZNF831 Missense_Mutation p.E1263K 0.32 tolerated(0.06) possibly_damaging(0.537) TCGA-FR-A726-01 20 57771048 57771048 T G ZNF831 Missense_Mutation p.I1288S 0.31 tolerated(0.1) benign(0.006) TCGA-FR-A726-01 20 58381164 58381164 G A PHACTR3 Missense_Mutation p.E415K 0.32 deleterious(0) probably_damaging(0.978) TCGA-FR-A726-01 20 58448959 58448959 G A SYCP2 Silent p.F1169F 0.35 TCGA-FR-A726-01 20 58569464 58569464 C T CDH26 Missense_Mutation p.P529L 0.35 deleterious(0.02) probably_damaging(0.96) TCGA-FR-A726-01 20 58644927 58644927 C T C20orf197 5'UTR 0.30 TCGA-FR-A726-01 20 58645663 58645663 C T C20orf197 Silent p.F27F 0.34 TCGA-FR-A726-01 20 5903629 5903629 G A CHGB Missense_Mutation p.R280K 0.41 tolerated(0.61) benign(0.128) TCGA-FR-A726-01 20 5904080 5904080 C T CHGB Silent p.F430F 0.38 TCGA-FR-A726-01 20 6015147 6015147 C T CRLS1 Missense_Mutation p.S256F 0.33 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 20 6021603 6021603 C T LRRN4 3'UTR 0.39 TCGA-FR-A726-01 20 60582654 60582654 T A TAF4 Missense_Mutation p.L641F 0.05 probably_damaging(0.996) TCGA-FR-A726-01 20 6077677 6077677 G A FERMT1 Missense_Mutation p.H321Y 0.32 deleterious(0) probably_damaging(0.919) TCGA-FR-A726-01 20 60864293 60864293 C T OSBPL2 Missense_Mutation p.L386F 0.30 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 20 60889996 60889996 G A LAMA5 Silent p.T2685T 0.29 TCGA-FR-A726-01 20 60902300 60902300 G A LAMA5 Silent p.L1701L 0.30 TCGA-FR-A726-01 20 61391670 61391670 C T NTSR1 3'UTR 0.39 TCGA-FR-A726-01 20 61438852 61438852 C T OGFR Intron 0.39 TCGA-FR-A726-01 20 61453109 61453109 G A COL9A3 Missense_Mutation p.G124R 0.50 deleterious(0) unknown(0) TCGA-FR-A726-01 20 61525505 61525505 G T DIDO1 Missense_Mutation p.Q872K 0.31 benign(0.103) TCGA-FR-A726-01 20 61526505 61526505 G A DIDO1 Missense_Mutation p.R743C 0.33 probably_damaging(1) TCGA-FR-A726-01 20 61538607 61538607 G A DIDO1 Silent p.A422A 0.29 TCGA-FR-A726-01 20 61538608 61538608 G A DIDO1 Missense_Mutation p.A422V 0.29 probably_damaging(0.998) TCGA-FR-A726-01 20 61941191 61941191 C T COL20A1 Missense_Mutation p.S396F 0.18 deleterious(0.04) probably_damaging(0.949) TCGA-FR-A726-01 20 61978163 61978163 C T CHRNA4 Nonsense_Mutation p.W604* 0.25 TCGA-FR-A726-01 20 61981283 61981283 G A CHRNA4 Missense_Mutation p.P494S 0.44 tolerated(0.46) benign(0.019) TCGA-FR-A726-01 20 62038321 62038321 G A KCNQ2 Silent p.F765F 0.50 TCGA-FR-A726-01 20 62192028 62192028 G A HELZ2 Missense_Mutation p.P2435L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 62193435 62193435 C T HELZ2 Silent p.Q2173Q 0.39 TCGA-FR-A726-01 20 62221725 62221725 G A GMEB2 Missense_Mutation p.S437F 0.19 deleterious(0.01) possibly_damaging(0.534) TCGA-FR-A726-01 20 644447 644447 G T SCRT2 Silent p.A264A 0.21 TCGA-FR-A726-01 20 6759411 6759411 G A BMP2 Missense_Mutation p.R289Q 0.26 tolerated(0.07) probably_damaging(0.921) TCGA-FR-A726-01 20 76859 76859 C T DEFB125 Missense_Mutation p.S91F 0.38 deleterious(0.04) possibly_damaging(0.831) TCGA-FR-A726-01 20 7915255 7915255 C T HAO1 Silent p.R55R 0.26 TCGA-FR-A726-01 20 7915279 7915279 C T HAO1 Nonsense_Mutation p.W47* 0.30 TCGA-FR-A726-01 20 853729 853729 G A ANGPT4 Silent p.L462L 0.34 TCGA-FR-A726-01 20 8639190 8639190 C T PLCB1 Missense_Mutation p.A234V 0.26 deleterious(0) possibly_damaging(0.497) TCGA-FR-A726-01 20 8696849 8696849 C T PLCB1 Intron 0.20 TCGA-FR-A726-01 20 8707983 8707983 C T PLCB1 Missense_Mutation p.S569F 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 20 8862331 8862331 G A PLCB1 Silent p.L1162L 0.34 TCGA-FR-A726-01 20 8862424 8862424 G A PLCB1 Silent p.V1193V 0.31 TCGA-FR-A726-01 20 9288543 9288543 G A PLCB4 Missense_Mutation p.E28K 0.27 tolerated(0.06) benign(0.281) TCGA-FR-A726-01 20 948718 948718 G A RSPO4 Missense_Mutation p.S48F 0.41 tolerated(0.18) possibly_damaging(0.66) TCGA-FR-A726-01 20 9495542 9495542 C T LAMP5 Nonsense_Mutation p.R15* 0.24 TCGA-FR-A726-01 20 9520098 9520098 G A PAK7 3'UTR 0.34 TCGA-FR-A726-01 20 9525066 9525066 G A PAK7 Missense_Mutation p.P607S 0.10 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 20 9543605 9543605 C T PAK7 Missense_Mutation p.D517N 0.29 deleterious(0.01) benign(0.339) TCGA-FR-A726-01 20 9546684 9546684 C T PAK7 Silent p.R446R 0.34 TCGA-FR-A726-01 21 10862760 10862760 C T IGHV1OR21-1 Missense_Mutation p.S19F 0.23 deleterious(0.01) possibly_damaging(0.707) TCGA-FR-A726-01 21 10862783 10862783 G A IGHV1OR21-1 Missense_Mutation p.G27R 0.13 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 21 10862823 10862823 C T IGHV1OR21-1 Missense_Mutation p.S40F 0.12 deleterious(0.02) possibly_damaging(0.7) TCGA-FR-A726-01 21 10934068 10934068 C T TPTE Missense_Mutation p.M303I 0.17 tolerated(0.09) benign(0.243) TCGA-FR-A726-01 21 11020861 11020861 G A BAGE2 RNA 0.19 TCGA-FR-A726-01 21 11029651 11029651 C T BAGE2 RNA 0.11 TCGA-FR-A726-01 21 11038949 11038949 G A BAGE2 RNA 0.04 TCGA-FR-A726-01 21 11038995 11038995 C T BAGE2 RNA 0.05 TCGA-FR-A726-01 21 11039189 11039189 G A BAGE2 RNA 0.05 TCGA-FR-A726-01 21 11039377 11039377 C T BAGE2 RNA 0.05 TCGA-FR-A726-01 21 11047480 11047480 C T BAGE2 Splice_Site 0.04 TCGA-FR-A726-01 21 11098803 11098803 C T BAGE2 RNA 0.17 TCGA-FR-A726-01 21 15326390 15326390 C T ANKRD20A11P RNA 0.34 TCGA-FR-A726-01 21 15326393 15326393 C T ANKRD20A11P RNA 0.35 TCGA-FR-A726-01 21 15516358 15516358 C T LIPI Intron 0.70 TCGA-FR-A726-01 21 15537625 15537625 G A LIPI Missense_Mutation p.P295S 0.45 deleterious(0.02) possibly_damaging(0.586) TCGA-FR-A726-01 21 17205825 17205825 G A USP25 Missense_Mutation p.A718T 0.18 tolerated(0.41) benign(0.134) TCGA-FR-A726-01 21 18933790 18933790 A T CXADR Missense_Mutation p.I277F 0.31 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 21 18933792 18933792 C T CXADR Silent p.I277I 0.31 TCGA-FR-A726-01 21 19685372 19685372 C T TMPRSS15 Silent p.T685T 0.28 TCGA-FR-A726-01 21 22652919 22652919 C T NCAM2 Missense_Mutation p.S26L 0.27 tolerated(0.28) probably_damaging(0.999) TCGA-FR-A726-01 21 22658711 22658711 G A NCAM2 Missense_Mutation p.E154K 0.37 tolerated(0.87) benign(0.341) TCGA-FR-A726-01 21 27269960 27269960 C T APP Silent p.T663T 0.22 TCGA-FR-A726-01 21 28296821 28296821 C T ADAMTS5 Missense_Mutation p.G782S 0.39 deleterious(0.01) possibly_damaging(0.688) TCGA-FR-A726-01 21 28337977 28337977 G A ADAMTS5 Missense_Mutation p.S245L 0.20 tolerated(0.38) benign(0) TCGA-FR-A726-01 21 31062188 31062188 C T GRIK1 Nonsense_Mutation p.W135* 0.19 TCGA-FR-A726-01 21 31062264 31062264 G A GRIK1 Missense_Mutation p.P110S 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 21 31538635 31538635 C T CLDN17 Missense_Mutation p.G101S 0.12 deleterious(0.02) probably_damaging(0.922) TCGA-FR-A726-01 21 31654547 31654547 G A KRTAP24-1 Missense_Mutation p.P235L 0.35 deleterious(0) possibly_damaging(0.908) TCGA-FR-A726-01 21 31654819 31654819 G A KRTAP24-1 Silent p.T144T 0.25 TCGA-FR-A726-01 21 31768652 31768652 C T KRTAP13-1 Missense_Mutation p.P83L 0.22 tolerated(0.08) benign(0.327) TCGA-FR-A726-01 21 32119282 32119282 G A KRTAP21-2 Missense_Mutation p.S80F 0.26 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 21 32410571 32410571 T G KRTAP19-8 Nonstop_Mutation p.*64Cext*? 0.20 TCGA-FR-A726-01 21 32496994 32496994 C T TIAM1 Silent p.K1384K 0.36 TCGA-FR-A726-01 21 32554888 32554888 C T TIAM1 Missense_Mutation p.D913N 0.27 tolerated(0.16) benign(0.002) TCGA-FR-A726-01 21 32617854 32617854 C T TIAM1 Missense_Mutation p.D512N 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-FR-A726-01 21 32617855 32617855 C T TIAM1 Silent p.K511K 0.24 TCGA-FR-A726-01 21 32639207 32639207 G A TIAM1 Missense_Mutation p.R28C 0.08 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-FR-A726-01 21 33371134 33371134 C T HUNK Silent p.S594S 0.30 TCGA-FR-A726-01 21 33679063 33679063 G A MRAP Intron 0.19 TCGA-FR-A726-01 21 34003615 34003615 G A SYNJ1 Missense_Mutation p.S1510F 0.32 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-FR-A726-01 21 34003985 34003985 G T SYNJ1 Missense_Mutation p.P1387T 0.10 tolerated_low_confidence(0.29) benign(0.046) TCGA-FR-A726-01 21 34136668 34136668 G A PAXBP1 Missense_Mutation p.L214F 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-FR-A726-01 21 34655402 34655402 C T IL10RB Nonsense_Mutation p.Q168* 0.28 TCGA-FR-A726-01 21 34861300 34861300 C T DNAJC28 Missense_Mutation p.R134Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 21 34929558 34929558 C T SON Missense_Mutation p.P2086L 0.24 unknown(0) TCGA-FR-A726-01 21 35183305 35183305 C T ITSN1 Silent p.P782P 0.32 TCGA-FR-A726-01 21 35821447 35821447 C T KCNE1 3'UTR 0.34 TCGA-FR-A726-01 21 35890552 35890552 C T RCAN1 Missense_Mutation p.E197K 0.30 tolerated(0.13) benign(0.068) TCGA-FR-A726-01 21 37586432 37586432 T G DOPEY2 Missense_Mutation p.Y320D 0.10 tolerated(0.2) benign(0.001) TCGA-FR-A726-01 21 38103428 38103428 C T SIM2 Missense_Mutation p.H276Y 0.29 tolerated(0.05) benign(0.053) TCGA-FR-A726-01 21 38132083 38132083 G A HLCS Silent p.I580I 0.10 TCGA-FR-A726-01 21 38302714 38302714 G A HLCS Missense_Mutation p.P339L 0.31 deleterious(0.02) possibly_damaging(0.808) TCGA-FR-A726-01 21 38997645 38997645 G A KCNJ6 Missense_Mutation p.P363L 0.27 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 21 39580557 39580557 G A DSCR10 RNA 0.35 TCGA-FR-A726-01 21 39671970 39671970 C T KCNJ15 Missense_Mutation p.P263S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 21 39755735 39755735 G A ERG Missense_Mutation p.P351S 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 21 40883722 40883722 C T SH3BGR 3'UTR 0.39 TCGA-FR-A726-01 21 41032486 41032486 G A B3GALT5 Splice_Site p.X1_splice 0.27 TCGA-FR-A726-01 21 41032882 41032882 C T B3GALT5 Silent p.T132T 0.24 TCGA-FR-A726-01 21 41137755 41137755 G A IGSF5 Missense_Mutation p.G132R 0.26 tolerated(0.15) benign(0.288) TCGA-FR-A726-01 21 41142948 41142948 C T IGSF5 Missense_Mutation p.S175F 0.37 tolerated(0.08) benign(0.025) TCGA-FR-A726-01 21 41143056 41143056 G A IGSF5 Missense_Mutation p.G211E 0.36 tolerated(0.38) probably_damaging(0.999) TCGA-FR-A726-01 21 41385036 41385036 G A DSCAM Silent p.S1988S 0.21 TCGA-FR-A726-01 21 41416042 41416042 C T DSCAM Silent p.E1782E 0.28 TCGA-FR-A726-01 21 41550970 41550970 G A DSCAM Missense_Mutation p.S944L 0.31 tolerated(0.12) benign(0) TCGA-FR-A726-01 21 41561106 41561106 C T DSCAM Missense_Mutation p.E806K 0.29 tolerated(0.23) benign(0.044) TCGA-FR-A726-01 21 41684228 41684228 G A DSCAM Silent p.F614F 0.25 TCGA-FR-A726-01 21 41710281 41710281 C T DSCAM Missense_Mutation p.M510I 0.37 deleterious(0.01) possibly_damaging(0.876) TCGA-FR-A726-01 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.32 tolerated(0.11) probably_damaging(0.993) TCGA-FR-A726-01 21 41719737 41719737 C T DSCAM Missense_Mutation p.G357E 0.33 tolerated(0.34) possibly_damaging(0.685) TCGA-FR-A726-01 21 42080486 42080486 G A DSCAM Silent p.P85P 0.28 TCGA-FR-A726-01 21 42808946 42808946 C T MX1 Silent p.I101I 0.25 TCGA-FR-A726-01 21 42861521 42861521 C T TMPRSS2 Splice_Site p.X117_splice 0.25 TCGA-FR-A726-01 21 43332482 43332482 C T C2CD2 Silent p.T304T 0.34 TCGA-FR-A726-01 21 43411105 43411105 G A ZBTB21 Missense_Mutation p.L1034F 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 21 43412061 43412061 G A ZBTB21 Missense_Mutation p.P715L 0.28 tolerated(0.22) benign(0.075) TCGA-FR-A726-01 21 43519065 43519065 C T UMODL1 Missense_Mutation p.L321F 0.28 tolerated(0.61) benign(0.159) TCGA-FR-A726-01 21 43536067 43536067 G A UMODL1 Missense_Mutation p.R944Q 0.31 tolerated(1) benign(0.417) TCGA-FR-A726-01 21 43539398 43539398 C T UMODL1 Silent p.L1013L 0.28 TCGA-FR-A726-01 21 43706016 43706016 T A ABCG1 Nonsense_Mutation p.C295* 0.28 TCGA-FR-A726-01 21 43708058 43708058 C T ABCG1 Missense_Mutation p.R345W 0.28 deleterious(0) benign(0.001) TCGA-FR-A726-01 21 44180965 44180965 C T PDE9A Silent p.L345L 0.26 TCGA-FR-A726-01 21 44282486 44282486 G C WDR4 Missense_Mutation p.R158G 0.21 deleterious(0.02) possibly_damaging(0.462) TCGA-FR-A726-01 21 44323879 44323879 C T NDUFV3 Nonsense_Mutation p.Q253* 0.09 TCGA-FR-A726-01 21 44427677 44427677 C T PKNOX1 Missense_Mutation p.P43L 0.39 tolerated(0.16) benign(0.002) TCGA-FR-A726-01 21 44592263 44592263 C T CRYAA Missense_Mutation p.S132F 0.25 deleterious(0) possibly_damaging(0.819) TCGA-FR-A726-01 21 44839813 44839813 G A SIK1 Missense_Mutation p.R349W 0.30 deleterious(0.01) benign(0.004) TCGA-FR-A726-01 21 44840298 44840298 G A SIK1 Missense_Mutation p.P263L 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 21 45555945 45555945 C T C21orf33 Silent p.I66I 0.34 TCGA-FR-A726-01 21 45656910 45656910 G A ICOSLG Silent p.N82N 0.34 TCGA-FR-A726-01 21 45708281 45708281 G A AIRE Missense_Mutation p.D198N 0.34 deleterious(0) probably_damaging(0.936) TCGA-FR-A726-01 21 45708311 45708311 G A AIRE Missense_Mutation p.G208R 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 21 45713771 45713771 C T AIRE Missense_Mutation p.P460S 0.38 tolerated(0.06) possibly_damaging(0.662) TCGA-FR-A726-01 21 45978020 45978020 G A KRTAP10-3 Silent p.S193S 0.34 TCGA-FR-A726-01 21 46011220 46011220 G A KRTAP10-6 3'UTR 0.45 TCGA-FR-A726-01 21 46020560 46020560 G A KRTAP10-7 Silent p.L13L 0.08 TCGA-FR-A726-01 21 46058021 46058021 C T KRTAP10-10 Silent p.L229L 0.27 TCGA-FR-A726-01 21 46306717 46306717 G A ITGB2 Silent p.I727I 0.27 TCGA-FR-A726-01 21 46319060 46319060 G A ITGB2 Silent p.G305G 0.31 TCGA-FR-A726-01 21 46363655 46363655 C T FAM207A Silent p.A62A 0.37 TCGA-FR-A726-01 21 46645667 46645667 C T ADARB1 3'UTR 0.44 TCGA-FR-A726-01 21 46689879 46689879 T C POFUT2 Missense_Mutation p.K296R 0.35 tolerated(0.47) benign(0.03) TCGA-FR-A726-01 21 46901890 46901890 C T COL18A1 Missense_Mutation p.P722L 0.37 possibly_damaging(0.851) TCGA-FR-A726-01 21 46935720 46935720 G A SLC19A1 Missense_Mutation p.P543L 0.34 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FR-A726-01 21 47350724 47350724 C T PCBP3 Missense_Mutation p.S274F 0.32 tolerated(0.34) benign(0.027) TCGA-FR-A726-01 21 47419073 47419073 G A COL6A1 Missense_Mutation p.D561N 0.22 tolerated(0.46) benign(0.074) TCGA-FR-A726-01 21 47423731 47423731 G A COL6A1 Missense_Mutation p.R964Q 0.25 tolerated(0.45) benign(0.032) TCGA-FR-A726-01 21 47558804 47558804 C T FTCD Missense_Mutation p.E432K 0.30 deleterious(0.02) benign(0.126) TCGA-FR-A726-01 21 47836121 47836121 C T PCNT Silent p.L2097L 0.11 TCGA-FR-A726-01 21 47959822 47959822 G A DIP2A Missense_Mutation p.V652I 0.40 tolerated(0.09) probably_damaging(0.997) TCGA-FR-A726-01 22 17072874 17072874 C T CCT8L2 Nonsense_Mutation p.W189* 0.37 TCGA-FR-A726-01 22 17072875 17072875 C T CCT8L2 Nonsense_Mutation p.W189* 0.37 TCGA-FR-A726-01 22 17445691 17445691 C T GAB4 Missense_Mutation p.D481N 0.36 deleterious(0.01) possibly_damaging(0.811) TCGA-FR-A726-01 22 18016902 18016902 G A CECR2 Missense_Mutation p.E386K 0.18 tolerated(0.09) benign(0.397) TCGA-FR-A726-01 22 18300419 18300419 C T MICAL3 Missense_Mutation p.E1670K 0.30 benign(0.007) TCGA-FR-A726-01 22 18562715 18562715 C T PEX26 Silent p.V102V 0.31 TCGA-FR-A726-01 22 18562716 18562716 C T PEX26 Missense_Mutation p.L103F 0.31 deleterious(0.02) probably_damaging(0.983) TCGA-FR-A726-01 22 18844924 18844924 C T BCRP7 RNA 0.08 TCGA-FR-A726-01 22 18845988 18845988 C T BCRP7 Intron 0.09 TCGA-FR-A726-01 22 18979625 18979625 C T DGCR5 RNA 0.35 TCGA-FR-A726-01 22 18979626 18979626 C T DGCR5 RNA 0.31 TCGA-FR-A726-01 22 19171065 19171065 C T CLTCL1 Silent p.Q1555Q 0.29 TCGA-FR-A726-01 22 19188847 19188847 C T CLTCL1 Nonsense_Mutation p.W1253* 0.41 TCGA-FR-A726-01 22 19217452 19217452 G A CLTCL1 Missense_Mutation p.S564F 0.16 deleterious(0) probably_damaging(0.962) TCGA-FR-A726-01 22 19839507 19839507 C T C22orf29 Missense_Mutation p.R93K 0.33 tolerated(0.52) benign(0.244) TCGA-FR-A726-01 22 19978276 19978276 G A ARVCF Silent p.A14A 0.33 TCGA-FR-A726-01 22 20114578 20114578 C T RANBP1 3'UTR 0.25 TCGA-FR-A726-01 22 20129035 20129035 C T ZDHHC8 Silent p.F369F 0.37 TCGA-FR-A726-01 22 20229922 20229922 G A RTN4R Missense_Mutation p.A245V 0.34 tolerated(0.27) benign(0.005) TCGA-FR-A726-01 22 20457945 20457945 A T RIMBP3 Missense_Mutation p.N1119K 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 22 20457977 20457977 G A RIMBP3 Missense_Mutation p.P1109S 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 20819167 20819167 G A KLHL22 Nonsense_Mutation p.R364* 0.30 TCGA-FR-A726-01 22 20819517 20819517 G A KLHL22 Missense_Mutation p.P247L 0.31 deleterious(0.04) possibly_damaging(0.593) TCGA-FR-A726-01 22 21138260 21138260 G A SERPIND1 Missense_Mutation p.G297E 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 21161738 21161738 G A PI4KA Silent p.P360P 0.38 TCGA-FR-A726-01 22 21304080 21304080 C T CRKL Missense_Mutation p.P287S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 22 21370338 21370338 G A P2RX6 Missense_Mutation p.G91E 0.29 deleterious(0.04) possibly_damaging(0.521) TCGA-FR-A726-01 22 21742780 21742780 G A RIMBP3B Missense_Mutation p.D1545N 0.12 tolerated(0.15) possibly_damaging(0.813) TCGA-FR-A726-01 22 21742812 21742812 C T RIMBP3B Silent p.S1555S 0.17 TCGA-FR-A726-01 22 22453557 22453557 C T IGLV8-61 Silent p.I101I 0.26 TCGA-FR-A726-01 22 22569507 22569507 C T IGLV10-54 Silent p.L67L 0.40 TCGA-FR-A726-01 22 22676848 22676848 C T IGLV1-51 5'UTR 0.45 TCGA-FR-A726-01 22 22707495 22707495 C T IGLV5-48 Missense_Mutation p.S28F 0.24 deleterious(0.04) benign(0.3) TCGA-FR-A726-01 22 22730602 22730602 C T IGLV5-45 Missense_Mutation p.P33S 0.25 tolerated(0.09) benign(0.233) TCGA-FR-A726-01 22 23114963 23114963 C T IGLV3-12 Nonsense_Mutation p.R79* 0.27 TCGA-FR-A726-01 22 23162007 23162007 G A IGLV3-9 Missense_Mutation p.G34R 0.27 deleterious(0.04) benign(0.404) TCGA-FR-A726-01 22 23162089 23162089 C T IGLV3-9 Missense_Mutation p.A61V 0.32 deleterious(0.05) benign(0.119) TCGA-FR-A726-01 22 23438038 23438038 G A GNAZ Silent p.Q52Q 0.30 TCGA-FR-A726-01 22 23465388 23465388 C T GNAZ Missense_Mutation p.R280C 0.38 deleterious(0.03) benign(0.341) TCGA-FR-A726-01 22 23524176 23524176 G A BCR Silent p.E343E 0.43 TCGA-FR-A726-01 22 23596118 23596118 G A BCR Missense_Mutation p.R471K 0.26 deleterious(0.03) benign(0.364) TCGA-FR-A726-01 22 23613743 23613743 G A BCR Missense_Mutation p.D629N 0.25 deleterious(0.04) benign(0.079) TCGA-FR-A726-01 22 23656883 23656883 C T BCR Silent p.S1236S 0.12 TCGA-FR-A726-01 22 24560519 24560519 C T CABIN1 Missense_Mutation p.P1633L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 22 24621313 24621313 G A GGT5 Missense_Mutation p.P469L 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 24621543 24621543 G A GGT5 Missense_Mutation p.P436L 0.27 tolerated(0.27) benign(0.008) TCGA-FR-A726-01 22 24640544 24640544 G A GGT5 Silent p.S50S 0.37 TCGA-FR-A726-01 22 24829621 24829621 C T ADORA2A Silent p.F83F 0.31 TCGA-FR-A726-01 22 24898476 24898476 C T UPB1 Intron 0.27 TCGA-FR-A726-01 22 24906739 24906739 G A UPB1 Silent p.T129T 0.26 TCGA-FR-A726-01 22 25023444 25023444 G A GGT1 Missense_Mutation p.A356T 0.30 tolerated(0.55) benign(0.039) TCGA-FR-A726-01 22 25124351 25124351 C T PIWIL3 Silent p.L575L 0.25 TCGA-FR-A726-01 22 25243704 25243704 C T SGSM1 Silent p.F81F 0.42 TCGA-FR-A726-01 22 25264729 25264729 G A SGSM1 Missense_Mutation p.G400S 0.41 tolerated(0.61) benign(0.007) TCGA-FR-A726-01 22 25627666 25627666 C T CRYBB2 Missense_Mutation p.P182L 0.26 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 22 25755850 25755850 G A LRP5L Silent p.I70I 0.31 TCGA-FR-A726-01 22 26164456 26164456 G A MYO18B Silent p.K191K 0.47 TCGA-FR-A726-01 22 26181414 26181414 C T MYO18B Nonsense_Mutation p.Q778* 0.30 TCGA-FR-A726-01 22 26228956 26228956 C T MYO18B Missense_Mutation p.P1018S 0.32 tolerated(0.67) possibly_damaging(0.495) TCGA-FR-A726-01 22 26239706 26239706 C T MYO18B Silent p.S1071S 0.32 TCGA-FR-A726-01 22 26351298 26351298 G A MYO18B Missense_Mutation p.E2042K 0.24 deleterious(0.01) benign(0.307) TCGA-FR-A726-01 22 26399266 26399266 G A MYO18B Missense_Mutation p.R2108Q 0.21 tolerated(0.47) benign(0.004) TCGA-FR-A726-01 22 26423623 26423623 G A MYO18B Missense_Mutation p.M2561I 0.25 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 22 26688625 26688625 G A SEZ6L Silent p.K116K 0.20 TCGA-FR-A726-01 22 26689016 26689016 G A SEZ6L Missense_Mutation p.E247K 0.37 tolerated(0.08) benign(0.41) TCGA-FR-A726-01 22 26706750 26706750 G A SEZ6L Silent p.E543E 0.37 TCGA-FR-A726-01 22 26849302 26849302 G A HPS4 Missense_Mutation p.P675L 0.32 deleterious(0.03) benign(0.132) TCGA-FR-A726-01 22 27018595 27018595 G A CRYBA4 Nonsense_Mutation p.W12* 0.30 TCGA-FR-A726-01 22 28193360 28193360 C T MN1 Missense_Mutation p.E1058K 0.31 probably_damaging(0.996) TCGA-FR-A726-01 22 29085182 29085182 A T CHEK2 Missense_Mutation p.F538I 0.36 tolerated(0.67) benign(0.295) TCGA-FR-A726-01 22 29455150 29455150 C T C22orf31 Silent p.E151E 0.38 TCGA-FR-A726-01 22 29886248 29886248 G A NEFH Silent p.K873K 0.33 TCGA-FR-A726-01 22 29908012 29908012 G A THOC5 Missense_Mutation p.R599W 0.34 deleterious(0.02) benign(0.097) TCGA-FR-A726-01 22 29957591 29957591 G A NIPSNAP1 Silent p.S161S 0.39 TCGA-FR-A726-01 22 30127056 30127056 G A ZMAT5 3'UTR 0.25 TCGA-FR-A726-01 22 30127439 30127439 G A CABP7 3'UTR 0.27 TCGA-FR-A726-01 22 30366972 30366972 C T MTMR3 5'UTR 0.40 TCGA-FR-A726-01 22 30416299 30416299 C T MTMR3 Missense_Mutation p.P884L 0.41 tolerated_low_confidence(0.18) benign(0.007) TCGA-FR-A726-01 22 30689700 30689700 G A TBC1D10A Silent p.T337T 0.33 TCGA-FR-A726-01 22 30691028 30691028 G A TBC1D10A Missense_Mutation p.R188C 0.31 deleterious(0.02) possibly_damaging(0.515) TCGA-FR-A726-01 22 30887838 30887838 G A SEC14L4 Silent p.F298F 0.28 TCGA-FR-A726-01 22 31501919 31501919 C T SELM Silent p.K54K 0.28 TCGA-FR-A726-01 22 31531867 31531867 G A PLA2G3 Nonsense_Mutation p.Q458* 0.34 TCGA-FR-A726-01 22 31532751 31532751 C T PLA2G3 Missense_Mutation p.E412K 0.26 tolerated(0.07) benign(0.338) TCGA-FR-A726-01 22 31927102 31927102 C T SFI1 Missense_Mutation p.P109S 0.33 deleterious(0) possibly_damaging(0.798) TCGA-FR-A726-01 22 32108110 32108110 G A PRR14L Silent p.S1905S 0.31 TCGA-FR-A726-01 22 32108111 32108111 G A PRR14L Missense_Mutation p.S1905F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 22 32480561 32480561 G A SLC5A1 Missense_Mutation p.R267Q 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A726-01 22 32555105 32555105 G A C22orf42 Missense_Mutation p.P33L 0.21 tolerated_low_confidence(0.48) possibly_damaging(0.851) TCGA-FR-A726-01 22 32626954 32626954 C T SLC5A4 Splice_Site p.X377_splice 0.19 TCGA-FR-A726-01 22 32626955 32626955 C T SLC5A4 Missense_Mutation p.G377R 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 32831850 32831850 C T BPIFC Silent p.L255L 0.37 TCGA-FR-A726-01 22 33777939 33777939 G A LARGE Missense_Mutation p.S366F 0.27 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 22 35478510 35478510 G A ISX Splice_Site p.X77_splice 0.21 TCGA-FR-A726-01 22 36013450 36013450 C T MB 5'UTR 0.31 TCGA-FR-A726-01 22 36013451 36013451 C T MB 5'UTR 0.36 TCGA-FR-A726-01 22 36587600 36587600 C T APOL4 Silent p.E192E 0.34 TCGA-FR-A726-01 22 37325748 37325748 G A CSF2RB Missense_Mutation p.S206N 0.35 tolerated(0.19) benign(0.091) TCGA-FR-A726-01 22 37326841 37326841 G A CSF2RB Silent p.R327R 0.22 TCGA-FR-A726-01 22 37332621 37332621 A C CSF2RB Missense_Mutation p.S499R 0.17 deleterious(0) possibly_damaging(0.704) TCGA-FR-A726-01 22 37398041 37398041 G A TEX33 Missense_Mutation p.S109L 0.40 tolerated(0.77) benign(0) TCGA-FR-A726-01 22 37407002 37407002 G A TST 3'UTR 0.21 TCGA-FR-A726-01 22 37425309 37425309 C T MPST Silent p.F236F 0.30 TCGA-FR-A726-01 22 37453528 37453528 G A KCTD17 Missense_Mutation p.E168K 0.34 deleterious(0.04) benign(0.197) TCGA-FR-A726-01 22 37458679 37458679 G A KCTD17 3'UTR 0.28 TCGA-FR-A726-01 22 37462258 37462258 C A TMPRSS6 Silent p.L766L 0.27 TCGA-FR-A726-01 22 37499398 37499398 C T TMPRSS6 Silent p.E29E 0.31 TCGA-FR-A726-01 22 37524403 37524403 G A IL2RB Silent p.V463V 0.13 TCGA-FR-A726-01 22 37524499 37524499 G A IL2RB Silent p.S431S 0.27 TCGA-FR-A726-01 22 37535157 37535157 G A IL2RB Missense_Mutation p.L130F 0.21 deleterious(0.03) benign(0.104) TCGA-FR-A726-01 22 38119668 38119668 C T TRIOBP Missense_Mutation p.P369S 0.31 deleterious_low_confidence(0.02) benign(0.019) TCGA-FR-A726-01 22 38120474 38120474 C T TRIOBP Silent p.S637S 0.28 TCGA-FR-A726-01 22 38121680 38121680 C T TRIOBP Silent p.P1039P 0.26 TCGA-FR-A726-01 22 38122049 38122049 C T TRIOBP Silent p.T1162T 0.25 TCGA-FR-A726-01 22 38206039 38206039 C T GCAT Missense_Mutation p.L94F 0.19 deleterious(0) probably_damaging(0.956) TCGA-FR-A726-01 22 38282794 38282794 C T EIF3L Missense_Mutation p.T533I 0.08 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 22 39077956 39077956 C T TOMM22 5'UTR 0.37 TCGA-FR-A726-01 22 39262668 39262668 G A CBX6 Missense_Mutation p.A262V 0.39 tolerated(0.32) benign(0.005) TCGA-FR-A726-01 22 39410304 39410304 G A APOBEC3C 5'UTR 0.35 TCGA-FR-A726-01 22 39413810 39413810 C T APOBEC3C Missense_Mutation p.L72F 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 22 39418879 39418879 G A APOBEC3D Missense_Mutation p.E24K 0.31 tolerated(0.76) benign(0.002) TCGA-FR-A726-01 22 39445506 39445506 G A APOBEC3F Missense_Mutation p.E215K 0.36 tolerated(0.19) probably_damaging(0.953) TCGA-FR-A726-01 22 39760256 39760256 G A SYNGR1 Intron 0.31 TCGA-FR-A726-01 22 39822843 39822843 C T TAB1 Missense_Mutation p.P353S 0.33 tolerated(0.76) benign(0.001) TCGA-FR-A726-01 22 39832689 39832689 C T TAB1 3'Flank 0.50 TCGA-FR-A726-01 22 40043848 40043848 G A CACNA1I Missense_Mutation p.G495E 0.40 tolerated(0.4) unknown(0) TCGA-FR-A726-01 22 40140260 40140260 G A ENTHD1 Silent p.S416S 0.32 TCGA-FR-A726-01 22 40717184 40717184 C T TNRC6B Nonsense_Mutation p.R1689* 0.30 TCGA-FR-A726-01 22 41546183 41546183 C T EP300 Missense_Mutation p.P933L 0.27 unknown(0) TCGA-FR-A726-01 22 41752784 41752784 C T ZC3H7B Missense_Mutation p.P885S 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 41974873 41974873 G A PMM1 Missense_Mutation p.R163W 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 41980057 41980057 G A PMM1 Missense_Mutation p.T127I 0.23 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 22 42052982 42052982 C T XRCC6 Missense_Mutation p.P456L 0.21 tolerated(0.16) benign(0.022) TCGA-FR-A726-01 22 42209790 42209790 C T CCDC134 Silent p.S176S 0.26 TCGA-FR-A726-01 22 42264652 42264652 C T SREBF2 Silent p.S192S 0.44 TCGA-FR-A726-01 22 42415720 42415720 C T WBP2NL Missense_Mutation p.P76S 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 42477947 42477947 C T SMDT1 Missense_Mutation p.R69C 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 42477957 42477957 C T SMDT1 Missense_Mutation p.S72F 0.32 tolerated(0.11) probably_damaging(0.912) TCGA-FR-A726-01 22 42607563 42607563 G A TCF20 Missense_Mutation p.P1250L 0.33 probably_damaging(0.999) TCGA-FR-A726-01 22 42610693 42610693 G A TCF20 Missense_Mutation p.H207Y 0.38 probably_damaging(0.995) TCGA-FR-A726-01 22 42780920 42780920 G A NFAM1 3'UTR 0.24 TCGA-FR-A726-01 22 42988046 42988046 G A POLDIP3 Silent p.V312V 0.20 TCGA-FR-A726-01 22 43089398 43089398 C T A4GALT Missense_Mutation p.G187D 0.42 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 43243578 43243578 G A ARFGAP3 Missense_Mutation p.L44F 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 43604200 43604200 G A SCUBE1 Missense_Mutation p.T871I 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 43933305 43933305 C T EFCAB6 Missense_Mutation p.E1334K 0.32 deleterious(0.01) benign(0.041) TCGA-FR-A726-01 22 43933306 43933306 C T EFCAB6 Silent p.K1333K 0.33 TCGA-FR-A726-01 22 44063145 44063145 G C EFCAB6 Missense_Mutation p.L608V 0.35 tolerated(0.19) benign(0.001) TCGA-FR-A726-01 22 44073974 44073974 C T EFCAB6 Missense_Mutation p.D441N 0.29 tolerated(0.1) benign(0.209) TCGA-FR-A726-01 22 44277448 44277448 C T PNPLA5 Missense_Mutation p.G397R 0.35 tolerated(1) benign(0.004) TCGA-FR-A726-01 22 44277513 44277513 C T PNPLA5 Nonsense_Mutation p.W375* 0.22 TCGA-FR-A726-01 22 44581753 44581753 G A PARVG Splice_Site p.X48_splice 0.45 TCGA-FR-A726-01 22 44645441 44645441 C T KIAA1644 3'UTR 0.32 TCGA-FR-A726-01 22 45316298 45316298 C A PHF21B Nonsense_Mutation p.G65* 0.43 TCGA-FR-A726-01 22 45598980 45598980 G A KIAA0930 Missense_Mutation p.P253L 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 45960772 45960772 C T FBLN1 Intron 0.34 TCGA-FR-A726-01 22 46345931 46345931 G A WNT7B Missense_Mutation p.P56L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 22 46615714 46615714 C T PPARA Missense_Mutation p.R172C 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-FR-A726-01 22 46655146 46655146 G A PKDREJ Silent p.F1358F 0.31 TCGA-FR-A726-01 22 46693323 46693323 A G GTSE1 Missense_Mutation p.E9G 0.33 tolerated(0.37) benign(0.001) TCGA-FR-A726-01 22 46704244 46704244 G A GTSE1 Missense_Mutation p.G56R 0.29 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 22 46704245 46704245 G A GTSE1 Missense_Mutation p.G56E 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 46773084 46773084 G A CELSR1 Silent p.A2486A 0.10 TCGA-FR-A726-01 22 46929776 46929776 G A CELSR1 Missense_Mutation p.P1098S 0.04 tolerated(0.82) benign(0.146) TCGA-FR-A726-01 22 47116008 47116008 G A CERK Silent p.T118T 0.33 TCGA-FR-A726-01 22 50169739 50169739 C - BRD1 Frame_Shift_Del p.V933Cfs*14 0.28 TCGA-FR-A726-01 22 50216835 50216835 G A BRD1 Silent p.F377F 0.30 TCGA-FR-A726-01 22 50307074 50307074 A T ALG12 Missense_Mutation p.L85H 0.25 probably_damaging(0.986) TCGA-FR-A726-01 22 50356590 50356590 T G PIM3 Missense_Mutation p.C266G 0.29 deleterious(0) probably_damaging(0.949) TCGA-FR-A726-01 22 50499961 50499961 C T MLC1 3'UTR 0.32 TCGA-FR-A726-01 22 50530498 50530498 G A MOV10L1 Missense_Mutation p.D56N 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-FR-A726-01 22 50596753 50596753 G A MOV10L1 Intron 0.33 TCGA-FR-A726-01 22 50599900 50599900 G A MOV10L1 3'UTR 0.33 TCGA-FR-A726-01 22 50704897 50704897 G A MAPK11 Intron 0.44 TCGA-FR-A726-01 22 50750538 50750538 G A DENND6B 3'UTR 0.16 TCGA-FR-A726-01 22 50921037 50921037 G A ADM2 Missense_Mutation p.R51K 0.53 tolerated(0.46) benign(0.011) TCGA-FR-A726-01 22 50926447 50926447 G A MIOX Missense_Mutation p.E104K 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 22 50927998 50927998 G A MIOX Nonsense_Mutation p.W225* 0.23 TCGA-FR-A726-01 22 51040272 51040272 C T MAPK8IP2 Silent p.I40I 0.36 TCGA-FR-A726-01 22 51065117 51065117 G A ARSA Silent p.S252S 0.40 TCGA-FR-A726-01 22 51154147 51154147 C T SHANK3 Silent p.S788S 0.09 TCGA-FR-A726-01 22 51160431 51160431 G A SHANK3 Silent p.G1406G 0.46 TCGA-FR-A726-01 2 10104067 10104067 G A GRHL1 Missense_Mutation p.G267R 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 101192947 101192947 G A PDCL3 Missense_Mutation p.E237K 0.19 tolerated(0.35) benign(0.013) TCGA-FR-A726-01 2 101611898 101611898 G A NPAS2 Missense_Mutation p.D777N 0.32 deleterious(0) possibly_damaging(0.848) TCGA-FR-A726-01 2 10188320 10188320 C T KLF11 Missense_Mutation p.L286F 0.37 tolerated(0.1) benign(0.029) TCGA-FR-A726-01 2 101911460 101911460 G A RNF149 Missense_Mutation p.S215L 0.10 deleterious(0) possibly_damaging(0.678) TCGA-FR-A726-01 2 102456429 102456429 C T MAP4K4 Missense_Mutation p.R308C 0.07 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 2 102501657 102501657 G A MAP4K4 Missense_Mutation p.E1032K 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A726-01 2 102788361 102788361 A G IL1R1 Silent p.L274L 0.23 TCGA-FR-A726-01 2 102793024 102793024 C T IL1R1 Silent p.F505F 0.26 TCGA-FR-A726-01 2 102793325 102793325 C T IL1R1 3'UTR 0.21 TCGA-FR-A726-01 2 102851604 102851604 G A IL1RL2 Silent p.G515G 0.33 TCGA-FR-A726-01 2 102959823 102959823 G A IL1RL1 Silent p.L306L 0.30 TCGA-FR-A726-01 2 103013007 103013007 C T IL18R1 Silent p.I429I 0.27 TCGA-FR-A726-01 2 103013120 103013120 G A IL18R1 Missense_Mutation p.R467K 0.30 tolerated(0.06) probably_damaging(0.936) TCGA-FR-A726-01 2 103039642 103039642 G A IL18RAP 5'UTR 0.30 TCGA-FR-A726-01 2 103039701 103039701 G A IL18RAP 5'UTR 0.30 TCGA-FR-A726-01 2 103040466 103040466 C T IL18RAP Missense_Mutation p.S89L 0.39 deleterious(0.04) benign(0.074) TCGA-FR-A726-01 2 103040794 103040794 C T IL18RAP Missense_Mutation p.L167F 0.34 tolerated(0.07) benign(0.208) TCGA-FR-A726-01 2 103281581 103281581 C T SLC9A2 Missense_Mutation p.S259L 0.32 deleterious(0.03) possibly_damaging(0.821) TCGA-FR-A726-01 2 103300777 103300777 C T SLC9A2 Silent p.F469F 0.32 TCGA-FR-A726-01 2 103321079 103321079 G A SLC9A2 Missense_Mutation p.R641Q 0.26 tolerated(1) probably_damaging(0.996) TCGA-FR-A726-01 2 103322309 103322309 C T SLC9A2 Missense_Mutation p.S661F 0.29 deleterious(0.04) benign(0.004) TCGA-FR-A726-01 2 105713701 105713701 C G MRPS9 Missense_Mutation p.Q340E 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 2 105859145 105859145 C T GPR45 Missense_Mutation p.S277F 0.06 deleterious(0.05) benign(0.089) TCGA-FR-A726-01 2 105979899 105979899 C T FHL2 Silent p.R177R 0.19 TCGA-FR-A726-01 2 107021680 107021680 C T RGPD3 Missense_Mutation p.E1758K 0.12 deleterious_low_confidence(0) benign(0.292) TCGA-FR-A726-01 2 107041069 107041069 C T RGPD3 Missense_Mutation p.M1118I 0.27 deleterious(0.03) benign(0.339) TCGA-FR-A726-01 2 107049453 107049453 G A RGPD3 Nonsense_Mutation p.R803* 0.22 TCGA-FR-A726-01 2 107049690 107049690 C T RGPD3 Missense_Mutation p.E753K 0.15 deleterious(0) benign(0.027) TCGA-FR-A726-01 2 107446630 107446630 G A ST6GAL2 Nonsense_Mutation p.Q404* 0.25 TCGA-FR-A726-01 2 107459798 107459798 G A ST6GAL2 Silent p.V212V 0.33 TCGA-FR-A726-01 2 107459915 107459915 C T ST6GAL2 Silent p.V173V 0.30 TCGA-FR-A726-01 2 107459957 107459957 C T ST6GAL2 Silent p.R159R 0.36 TCGA-FR-A726-01 2 107460096 107460096 G A ST6GAL2 Missense_Mutation p.S113L 0.31 benign(0.003) TCGA-FR-A726-01 2 108487210 108487210 C T RGPD4 Missense_Mutation p.P917L 0.25 tolerated(0.09) benign(0.106) TCGA-FR-A726-01 2 108488757 108488757 G A RGPD4 Missense_Mutation p.D1433N 0.18 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 2 108488799 108488799 C T RGPD4 Missense_Mutation p.R1447C 0.27 deleterious(0.01) possibly_damaging(0.601) TCGA-FR-A726-01 2 108609428 108609428 G A SLC5A7 Missense_Mutation p.G98D 0.32 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 2 108609545 108609545 G A SLC5A7 Missense_Mutation p.G137E 0.34 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 2 108627165 108627165 C T SLC5A7 Missense_Mutation p.L531F 0.32 tolerated(0.05) benign(0.186) TCGA-FR-A726-01 2 109382112 109382112 C T RANBP2 Missense_Mutation p.S1706F 0.26 tolerated(0.12) probably_damaging(0.942) TCGA-FR-A726-01 2 109522763 109522763 C T EDAR Splice_Site p.X342_splice 0.33 TCGA-FR-A726-01 2 109547432 109547432 G A EDAR Silent p.L13L 0.30 TCGA-FR-A726-01 2 109547434 109547434 G A EDAR Missense_Mutation p.L13F 0.31 tolerated_low_confidence(0.26) probably_damaging(0.995) TCGA-FR-A726-01 2 110322028 110322028 G A SEPT10 Missense_Mutation p.H315Y 0.39 deleterious(0) probably_damaging(0.919) TCGA-FR-A726-01 2 110889310 110889310 G A NPHP1 Nonsense_Mutation p.R586* 0.43 TCGA-FR-A726-01 2 111408297 111408297 G A BUB1 Missense_Mutation p.R677C 0.40 tolerated(0.16) benign(0.001) TCGA-FR-A726-01 2 111562862 111562862 G A ACOXL Missense_Mutation p.G215R 0.29 deleterious(0.02) benign(0.35) TCGA-FR-A726-01 2 111562863 111562863 G A ACOXL Missense_Mutation p.G215E 0.28 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 2 113317046 113317046 C T POLR1B Missense_Mutation p.P503S 0.06 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 113416570 113416570 C T SLC20A1 Missense_Mutation p.T316I 0.30 tolerated(0.13) benign(0.009) TCGA-FR-A726-01 2 113588929 113588929 C T IL1B Silent p.K179K 0.33 TCGA-FR-A726-01 2 113676171 113676171 G A IL37 Missense_Mutation p.E148K 0.28 tolerated(0.36) benign(0.096) TCGA-FR-A726-01 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.39 tolerated(0.39) benign(0.015) TCGA-FR-A726-01 2 113736228 113736228 C T IL36G Missense_Mutation p.P5S 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.857) TCGA-FR-A726-01 2 113765423 113765423 G A IL36A Missense_Mutation p.M93I 0.28 tolerated(0.05) benign(0.188) TCGA-FR-A726-01 2 113765528 113765528 C T IL36A Silent p.I128I 0.38 TCGA-FR-A726-01 2 113780333 113780333 G A IL36B Missense_Mutation p.S138F 0.22 tolerated_low_confidence(1) benign(0) TCGA-FR-A726-01 2 113820059 113820059 T A IL36RN Silent p.G91G 0.26 TCGA-FR-A726-01 2 113820142 113820142 G A IL36RN Nonsense_Mutation p.W119* 0.31 TCGA-FR-A726-01 2 113830191 113830191 C T IL1F10 5'UTR 0.44 TCGA-FR-A726-01 2 113831967 113831967 C T IL1F10 Missense_Mutation p.P32S 0.35 tolerated(0.56) benign(0.036) TCGA-FR-A726-01 2 113832216 113832216 C T IL1F10 Intron 0.36 TCGA-FR-A726-01 2 113940642 113940642 C T PSD4 Silent p.S203S 0.27 TCGA-FR-A726-01 2 113994189 113994189 G A PAX8 Missense_Mutation p.P296L 0.47 deleterious(0) benign(0.038) TCGA-FR-A726-01 2 114000282 114000282 G A PAX8 Missense_Mutation p.P155S 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-FR-A726-01 2 114000313 114000313 C T PAX8 Missense_Mutation p.M144I 0.07 tolerated(0.31) benign(0.052) TCGA-FR-A726-01 2 116283548 116283548 G A DPP10 Silent p.Q151Q 0.31 TCGA-FR-A726-01 2 116485407 116485407 A C DPP10 Missense_Mutation p.N202H 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A726-01 2 116539962 116539962 G A DPP10 Silent p.T510T 0.29 TCGA-FR-A726-01 2 11758438 11758438 C T GREB1 Missense_Mutation p.S1146L 0.32 tolerated(0.14) benign(0.002) TCGA-FR-A726-01 2 11809692 11809692 C T NTSR2 Silent p.E188E 0.30 TCGA-FR-A726-01 2 11913768 11913768 C T LPIN1 Missense_Mutation p.P256S 0.27 tolerated(0.24) benign(0.001) TCGA-FR-A726-01 2 11919670 11919670 C T LPIN1 Missense_Mutation p.P335S 0.34 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 2 119726801 119726801 C T MARCO Silent p.L55L 0.28 TCGA-FR-A726-01 2 119732002 119732002 G A MARCO Missense_Mutation p.R185Q 0.32 tolerated(0.16) possibly_damaging(0.697) TCGA-FR-A726-01 2 119915171 119915171 C T C1QL2 Silent p.K225K 0.20 TCGA-FR-A726-01 2 120194575 120194575 C T TMEM37 Silent p.S44S 0.05 TCGA-FR-A726-01 2 120362466 120362466 G A PCDP1 Silent p.Q309Q 0.27 TCGA-FR-A726-01 2 120414087 120414087 G A PCDP1 3'UTR 0.50 TCGA-FR-A726-01 2 120703950 120703950 C T PTPN4 Silent p.L517L 0.32 TCGA-FR-A726-01 2 120799612 120799612 C T EPB41L5 Nonsense_Mutation p.Q71* 0.32 TCGA-FR-A726-01 2 121712840 121712840 G A GLI2 Silent p.K159K 0.09 TCGA-FR-A726-01 2 121746010 121746010 C T GLI2 Silent p.P840P 0.32 TCGA-FR-A726-01 2 125521638 125521638 T A CNTNAP5 Missense_Mutation p.I815N 0.09 deleterious(0) possibly_damaging(0.905) TCGA-FR-A726-01 2 1271294 1271294 G A SNTG2 Nonsense_Mutation p.W412* 0.28 TCGA-FR-A726-01 2 127826524 127826524 C T BIN1 Silent p.K165K 0.28 TCGA-FR-A726-01 2 128466403 128466403 G A WDR33 Missense_Mutation p.S1210F 0.20 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-FR-A726-01 2 128865628 128865628 C T UGGT1 Nonsense_Mutation p.Q132* 0.36 TCGA-FR-A726-01 2 129026036 129026036 G A HS6ST1 Silent p.F312F 0.46 TCGA-FR-A726-01 2 130725792 130725792 G A RAB6C-AS1 RNA 0.25 TCGA-FR-A726-01 2 130832275 130832275 C T POTEF Missense_Mutation p.E924K 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.878) TCGA-FR-A726-01 2 130868159 130868159 C T POTEF Missense_Mutation p.G338R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A726-01 2 130900882 130900882 G A CCDC74B Silent p.L85L 0.27 TCGA-FR-A726-01 2 131519767 131519767 C T AMER3 Missense_Mutation p.P41L 0.32 tolerated(0.31) benign(0.001) TCGA-FR-A726-01 2 131522136 131522136 G A AMER3 Missense_Mutation p.E831K 0.36 tolerated(0.45) benign(0.005) TCGA-FR-A726-01 2 132021641 132021641 C T POTEE Silent p.L871L 0.27 TCGA-FR-A726-01 2 132275369 132275369 C T AC093838.4 RNA 0.34 TCGA-FR-A726-01 2 132277182 132277182 C T AC093838.4 RNA 0.23 TCGA-FR-A726-01 2 133175290 133175290 C T GPR39 Silent p.F225F 0.32 TCGA-FR-A726-01 2 133489373 133489373 G A NCKAP5 Missense_Mutation p.P1794S 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A726-01 2 133489517 133489517 C T NCKAP5 Missense_Mutation p.E1746K 0.31 tolerated(0.64) possibly_damaging(0.846) TCGA-FR-A726-01 2 133489561 133489561 C T NCKAP5 Missense_Mutation p.G1731E 0.44 deleterious(0.04) probably_damaging(0.991) TCGA-FR-A726-01 2 133540229 133540229 C T NCKAP5 Silent p.K1385K 0.32 TCGA-FR-A726-01 2 133541155 133541155 C T NCKAP5 Missense_Mutation p.E1077K 0.36 tolerated(0.16) benign(0.057) TCGA-FR-A726-01 2 133541206 133541206 C T NCKAP5 Missense_Mutation p.D1060N 0.32 tolerated(0.28) benign(0.081) TCGA-FR-A726-01 2 133542129 133542129 G A NCKAP5 Missense_Mutation p.P752L 0.34 tolerated(0.15) benign(0.006) TCGA-FR-A726-01 2 133542202 133542202 C T NCKAP5 Missense_Mutation p.D728N 0.40 tolerated(0.99) benign(0.436) TCGA-FR-A726-01 2 135027970 135027970 C T MGAT5 Silent p.T85T 0.23 TCGA-FR-A726-01 2 135596255 135596255 G A ACMSD Translation_Start_Site p.M1? 0.42 deleterious(0.04) benign(0.049) TCGA-FR-A726-01 2 135602815 135602815 G A ACMSD Missense_Mutation p.G24R 0.30 deleterious(0.01) possibly_damaging(0.854) TCGA-FR-A726-01 2 135616903 135616903 C T ACMSD Missense_Mutation p.R59C 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 135621041 135621041 G A ACMSD Missense_Mutation p.R109K 0.39 tolerated(1) benign(0) TCGA-FR-A726-01 2 135621096 135621096 G A ACMSD Silent p.K127K 0.19 TCGA-FR-A726-01 2 136547361 136547361 C T LCT Silent p.Q1781Q 0.37 TCGA-FR-A726-01 2 136561646 136561646 C T LCT Nonsense_Mutation p.W1506* 0.33 TCGA-FR-A726-01 2 136566839 136566839 G A LCT Silent p.A1026A 0.33 TCGA-FR-A726-01 2 136567502 136567502 G A LCT Silent p.F805F 0.31 TCGA-FR-A726-01 2 136873010 136873010 G A CXCR4 Missense_Mutation p.P167L 0.31 tolerated(1) probably_damaging(1) TCGA-FR-A726-01 2 138330030 138330030 C T THSD7B Silent p.N1112N 0.43 TCGA-FR-A726-01 2 138330067 138330067 C T THSD7B Missense_Mutation p.L1125F 0.20 deleterious(0) unknown(0) TCGA-FR-A726-01 2 138373854 138373854 A G THSD7B Missense_Mutation p.E1181G 0.26 tolerated(0.32) unknown(0) TCGA-FR-A726-01 2 138400083 138400083 C T THSD7B Silent p.I1278I 0.37 TCGA-FR-A726-01 2 138417241 138417241 C T THSD7B Silent p.C1464C 0.25 TCGA-FR-A726-01 2 139308588 139308588 C T SPOPL Missense_Mutation p.L106F 0.26 deleterious(0.01) possibly_damaging(0.776) TCGA-FR-A726-01 2 139428713 139428713 C T NXPH2 Missense_Mutation p.E192K 0.26 deleterious(0) possibly_damaging(0.803) TCGA-FR-A726-01 2 139429122 139429122 G A NXPH2 Silent p.P55P 0.34 TCGA-FR-A726-01 2 140990639 140990639 G A LRP1B 3'UTR 0.40 TCGA-FR-A726-01 2 141055395 141055395 C T LRP1B Missense_Mutation p.G4317R 0.30 probably_damaging(0.956) TCGA-FR-A726-01 2 141081536 141081536 G A LRP1B Missense_Mutation p.S4147L 0.32 benign(0.307) TCGA-FR-A726-01 2 141093214 141093214 G A LRP1B Missense_Mutation p.P4029L 0.32 possibly_damaging(0.713) TCGA-FR-A726-01 2 141122349 141122349 C T LRP1B Missense_Mutation p.G3671E 0.27 probably_damaging(0.931) TCGA-FR-A726-01 2 141214161 141214161 G A LRP1B Missense_Mutation p.L3276F 0.42 possibly_damaging(0.587) TCGA-FR-A726-01 2 141294198 141294198 C T LRP1B Missense_Mutation p.G2532S 0.27 probably_damaging(0.959) TCGA-FR-A726-01 2 141299511 141299511 G A LRP1B Silent p.F2408F 0.31 TCGA-FR-A726-01 2 141458169 141458169 T A LRP1B Missense_Mutation p.D2150V 0.25 benign(0.008) TCGA-FR-A726-01 2 1418243 1418243 C T TPO Silent p.P21P 0.28 TCGA-FR-A726-01 2 143787215 143787215 C T KYNU Missense_Mutation p.H308Y 0.10 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 2 149243470 149243470 C T MBD5 Missense_Mutation p.P1002L 0.33 deleterious(0) unknown(0) TCGA-FR-A726-01 2 149247360 149247360 C T MBD5 Missense_Mutation p.H1154Y 0.40 tolerated_low_confidence(0.37) unknown(0) TCGA-FR-A726-01 2 1497627 1497627 G A TPO Missense_Mutation p.D608N 0.29 tolerated(0.08) benign(0.139) TCGA-FR-A726-01 2 150061773 150061773 G A LYPD6B Silent p.K28K 0.31 TCGA-FR-A726-01 2 1520681 1520681 T C TPO Missense_Mutation p.W849R 0.38 deleterious(0.04) possibly_damaging(0.514) TCGA-FR-A726-01 2 152226564 152226564 C T TNFAIP6 Missense_Mutation p.P142L 0.27 tolerated(0.26) benign(0.018) TCGA-FR-A726-01 2 152321634 152321634 G A RIF1 Missense_Mutation p.G1867E 0.07 tolerated_low_confidence(0.15) benign(0.006) TCGA-FR-A726-01 2 152370903 152370903 T A NEB Nonsense_Mutation p.K7686* 0.33 TCGA-FR-A726-01 2 152381110 152381110 G A NEB Silent p.A7431A 0.06 TCGA-FR-A726-01 2 152427050 152427050 G A NEB Silent p.P5693P 0.29 TCGA-FR-A726-01 2 152522845 152522845 G A NEB Missense_Mutation p.P1597L 0.28 probably_damaging(0.999) TCGA-FR-A726-01 2 152671700 152671700 G A ARL5A Silent p.I20I 0.35 TCGA-FR-A726-01 2 15307268 15307268 T A NBAS Missense_Mutation p.E2340D 0.42 tolerated(0.38) benign(0.002) TCGA-FR-A726-01 2 153431746 153431746 C T FMNL2 Silent p.I231I 0.36 TCGA-FR-A726-01 2 153482066 153482066 G A FMNL2 Missense_Mutation p.R651Q 0.28 benign(0.417) TCGA-FR-A726-01 2 15415939 15415939 A G NBAS Missense_Mutation p.L1798P 0.33 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 2 15417144 15417144 G A NBAS Silent p.H1740H 0.37 TCGA-FR-A726-01 2 154801125 154801125 G A GALNT13 Missense_Mutation p.E39K 0.28 tolerated(0.31) benign(0.004) TCGA-FR-A726-01 2 155098563 155098563 C T GALNT13 Missense_Mutation p.P111L 0.27 tolerated(0.39) benign(0.013) TCGA-FR-A726-01 2 155252561 155252561 G A GALNT13 Silent p.L405L 0.28 TCGA-FR-A726-01 2 15555702 15555702 G A NBAS Missense_Mutation p.P969S 0.30 tolerated(0.2) benign(0.186) TCGA-FR-A726-01 2 155566193 155566193 C T KCNJ3 Nonsense_Mutation p.Q261* 0.31 TCGA-FR-A726-01 2 155711631 155711631 C T KCNJ3 Nonsense_Mutation p.Q438* 0.36 TCGA-FR-A726-01 2 15679377 15679377 G A NBAS Silent p.L161L 0.33 TCGA-FR-A726-01 2 158115286 158115286 C T GALNT5 Missense_Mutation p.S231L 0.33 tolerated(0.78) benign(0.004) TCGA-FR-A726-01 2 158157222 158157222 C T GALNT5 Missense_Mutation p.P717L 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 158272454 158272454 C T CYTIP Missense_Mutation p.G272D 0.09 tolerated(0.47) benign(0.025) TCGA-FR-A726-01 2 158390483 158390483 G A ACVR1C Missense_Mutation p.R477C 0.27 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 2 158974442 158974442 G A UPP2 Missense_Mutation p.G206E 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A726-01 2 159481480 159481480 C T PKP4 Missense_Mutation p.P232S 0.30 deleterious(0.01) possibly_damaging(0.902) TCGA-FR-A726-01 2 159481481 159481481 C T PKP4 Missense_Mutation p.P232L 0.30 deleterious(0) probably_damaging(0.951) TCGA-FR-A726-01 2 160176749 160176749 G A BAZ2B 3'UTR 0.16 TCGA-FR-A726-01 2 160206323 160206323 G T BAZ2B Missense_Mutation p.Q1587K 0.34 benign(0.001) TCGA-FR-A726-01 2 160206848 160206848 C T BAZ2B Missense_Mutation p.E1412K 0.19 probably_damaging(0.995) TCGA-FR-A726-01 2 160604724 160604724 C T MARCH7 Missense_Mutation p.S308L 0.34 deleterious(0) possibly_damaging(0.501) TCGA-FR-A726-01 2 160604965 160604965 C T MARCH7 Silent p.S388S 0.32 TCGA-FR-A726-01 2 160637459 160637459 C T LY75-CD302 Missense_Mutation p.D1718N 0.29 tolerated(0.12) benign(0.009) TCGA-FR-A726-01 2 160879179 160879179 C T PLA2R1 Missense_Mutation p.D431N 0.34 tolerated(1) benign(0.02) TCGA-FR-A726-01 2 160885393 160885393 C T PLA2R1 Missense_Mutation p.G308E 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A726-01 2 160885394 160885394 C T PLA2R1 Missense_Mutation p.G308R 0.17 tolerated(0.15) possibly_damaging(0.558) TCGA-FR-A726-01 2 160901388 160901388 G A PLA2R1 Silent p.V130V 0.31 TCGA-FR-A726-01 2 161055755 161055755 C T ITGB6 Missense_Mutation p.G26R 0.23 tolerated(1) benign(0.203) TCGA-FR-A726-01 2 162730459 162730459 C T SLC4A10 Missense_Mutation p.P298S 0.38 tolerated(0.74) benign(0.001) TCGA-FR-A726-01 2 163002090 163002090 C T GCG Missense_Mutation p.E118K 0.29 deleterious(0.03) probably_damaging(0.988) TCGA-FR-A726-01 2 163055337 163055337 C T FAP Silent p.R444R 0.30 TCGA-FR-A726-01 2 163250930 163250930 C T KCNH7 Silent p.R893R 0.55 TCGA-FR-A726-01 2 163374243 163374243 C T KCNH7 Missense_Mutation p.E297K 0.18 tolerated(0.1) possibly_damaging(0.475) TCGA-FR-A726-01 2 163374437 163374437 G A KCNH7 Missense_Mutation p.S232F 0.36 deleterious(0.04) benign(0.396) TCGA-FR-A726-01 2 163374572 163374572 G A KCNH7 Missense_Mutation p.S187L 0.35 tolerated(0.64) benign(0.009) TCGA-FR-A726-01 2 163694970 163694970 C T KCNH7 Missense_Mutation p.R20Q 0.31 deleterious(0.04) probably_damaging(0.956) TCGA-FR-A726-01 2 1643117 1643117 C T PXDN Missense_Mutation p.E1344K 0.41 tolerated(0.1) benign(0.009) TCGA-FR-A726-01 2 164466426 164466426 G A FIGN Missense_Mutation p.S639F 0.27 deleterious(0) possibly_damaging(0.837) TCGA-FR-A726-01 2 1647297 1647297 G A PXDN Silent p.I1265I 0.40 TCGA-FR-A726-01 2 1652160 1652160 G A PXDN Missense_Mutation p.P1131L 0.26 deleterious(0) possibly_damaging(0.809) TCGA-FR-A726-01 2 1652161 1652161 G A PXDN Missense_Mutation p.P1131S 0.25 tolerated(0.14) benign(0.086) TCGA-FR-A726-01 2 1653221 1653221 G A PXDN Silent p.T777T 0.36 TCGA-FR-A726-01 2 165381522 165381522 T A GRB14 Missense_Mutation p.I224F 0.31 deleterious(0.03) benign(0.017) TCGA-FR-A726-01 2 165381523 165381523 C T GRB14 Silent p.Q223Q 0.31 TCGA-FR-A726-01 2 165956853 165956853 A G SCN3A Silent p.L1309L 0.50 TCGA-FR-A726-01 2 165997284 165997284 G A SCN3A Silent p.S632S 0.32 TCGA-FR-A726-01 2 166003251 166003251 G A SCN3A Nonsense_Mutation p.Q557* 0.34 TCGA-FR-A726-01 2 166011048 166011048 G A SCN3A Nonsense_Mutation p.Q432* 0.30 TCGA-FR-A726-01 2 166183400 166183400 C T SCN2A Silent p.S685S 0.34 TCGA-FR-A726-01 2 166210722 166210722 C T SCN2A Silent p.A980A 0.32 TCGA-FR-A726-01 2 166234156 166234156 G A SCN2A Missense_Mutation p.R1435Q 0.30 deleterious(0.04) probably_damaging(0.955) TCGA-FR-A726-01 2 166245725 166245725 G A SCN2A Silent p.E1803E 0.29 TCGA-FR-A726-01 2 166605356 166605356 G A GALNT3 Missense_Mutation p.P613S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 2 166613634 166613634 G A GALNT3 Missense_Mutation p.L439F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 2 166866275 166866275 C T SCN1A Missense_Mutation p.R1319K 0.40 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 2 166868709 166868709 G A SCN1A Silent p.F1263F 0.34 TCGA-FR-A726-01 2 166892893 166892893 C T SCN1A Missense_Mutation p.E1032K 0.32 tolerated(0.13) possibly_damaging(0.664) TCGA-FR-A726-01 2 166901786 166901786 C T SCN1A Missense_Mutation p.G477S 0.36 tolerated(0.11) benign(0.026) TCGA-FR-A726-01 2 167060631 167060631 C T SCN9A Silent p.K1525K 0.28 TCGA-FR-A726-01 2 167089911 167089911 G A SCN9A Missense_Mutation p.S1277F 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 167141191 167141191 C T SCN9A Silent p.E582E 0.09 TCGA-FR-A726-01 2 167263054 167263054 C T SCN7A Missense_Mutation p.G1362E 0.08 deleterious(0.03) probably_damaging(0.936) TCGA-FR-A726-01 2 167298103 167298103 C T SCN7A Missense_Mutation p.E654K 0.33 tolerated(1) benign(0.007) TCGA-FR-A726-01 2 167328941 167328941 C T SCN7A Missense_Mutation p.G153E 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 2 16743311 16743311 C T FAM49A Missense_Mutation p.E133K 0.27 tolerated(0.06) probably_damaging(0.909) TCGA-FR-A726-01 2 16743338 16743338 C T FAM49A Missense_Mutation p.E124K 0.26 tolerated(0.54) benign(0.013) TCGA-FR-A726-01 2 1680705 1680705 C T PXDN Missense_Mutation p.R281Q 0.26 tolerated(0.19) benign(0.087) TCGA-FR-A726-01 2 168100145 168100145 C T XIRP2 Missense_Mutation p.S748L 0.31 benign(0.006) TCGA-FR-A726-01 2 168100471 168100471 C T XIRP2 Missense_Mutation p.P857S 0.33 benign(0.03) TCGA-FR-A726-01 2 168104984 168104984 C T XIRP2 Missense_Mutation p.S2361L 0.08 possibly_damaging(0.664) TCGA-FR-A726-01 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.31 TCGA-FR-A726-01 2 168114499 168114499 C T XIRP2 3'UTR 0.29 TCGA-FR-A726-01 2 168726599 168726599 C T B3GALT1 3'UTR 0.33 TCGA-FR-A726-01 2 169787308 169787308 G A ABCB11 Missense_Mutation p.S1093L 0.40 deleterious(0.05) benign(0.002) TCGA-FR-A726-01 2 169792860 169792860 C T ABCB11 Nonsense_Mutation p.W898* 0.33 TCGA-FR-A726-01 2 169938247 169938247 G A DHRS9 Silent p.K52K 0.42 TCGA-FR-A726-01 2 169939937 169939937 C T DHRS9 Silent p.L138L 0.24 TCGA-FR-A726-01 2 169985261 169985261 G A LRP2 Missense_Mutation p.S4627L 0.22 benign(0.001) TCGA-FR-A726-01 2 170048418 170048418 G A LRP2 Nonsense_Mutation p.Q2986* 0.38 TCGA-FR-A726-01 2 170063379 170063379 G A LRP2 Missense_Mutation p.T2284I 0.41 possibly_damaging(0.835) TCGA-FR-A726-01 2 170097370 170097370 G A LRP2 Intron 0.39 TCGA-FR-A726-01 2 170148851 170148851 G A LRP2 Silent p.F227F 0.33 TCGA-FR-A726-01 2 170175274 170175274 C A LRP2 Missense_Mutation p.C103F 0.07 probably_damaging(0.982) TCGA-FR-A726-01 2 170175275 170175275 A T LRP2 Missense_Mutation p.C103S 0.07 probably_damaging(0.952) TCGA-FR-A726-01 2 170177374 170177374 G A LRP2 Missense_Mutation p.R34C 0.28 probably_damaging(0.982) TCGA-FR-A726-01 2 171092559 171092559 C T MYO3B Missense_Mutation p.S221F 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 171371499 171371499 G A MYO3B Missense_Mutation p.V1147I 0.31 tolerated_low_confidence(0.37) benign(0.001) TCGA-FR-A726-01 2 171509848 171509848 C T MYO3B 3'UTR 0.33 TCGA-FR-A726-01 2 171573719 171573719 G A SP5 Silent p.G334G 0.17 TCGA-FR-A726-01 2 171686043 171686043 G A GAD1 Silent p.K68K 0.30 TCGA-FR-A726-01 2 171822373 171822373 C T GORASP2 Silent p.F364F 0.30 TCGA-FR-A726-01 2 171917638 171917638 G A TLK1 Missense_Mutation p.S120F 0.25 deleterious(0.02) benign(0.243) TCGA-FR-A726-01 2 172563838 172563838 C T DYNC1I2 Missense_Mutation p.P96S 0.10 deleterious(0.02) possibly_damaging(0.49) TCGA-FR-A726-01 2 172585288 172585288 C T DYNC1I2 Missense_Mutation p.P440L 0.37 tolerated(0.23) benign(0.04) TCGA-FR-A726-01 2 172965129 172965129 G A DLX2 3'UTR 0.23 TCGA-FR-A726-01 2 172965462 172965462 C T DLX2 Missense_Mutation p.G266S 0.57 tolerated(0.86) benign(0.014) TCGA-FR-A726-01 2 173337568 173337568 C T ITGA6 Intron 0.32 TCGA-FR-A726-01 2 173344722 173344722 C T ITGA6 Nonsense_Mutation p.Q498* 0.23 TCGA-FR-A726-01 2 175324680 175324680 C T GPR155 Missense_Mutation p.G566E 0.06 tolerated(1) benign(0) TCGA-FR-A726-01 2 175431854 175431854 G A WIPF1 Missense_Mutation p.P467L 0.34 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 2 175612948 175612948 C T CHRNA1 Missense_Mutation p.M451I 0.34 tolerated(0.95) benign(0.004) TCGA-FR-A726-01 2 17696506 17696506 C T RAD51AP2 Silent p.Q1059Q 0.37 TCGA-FR-A726-01 2 17696937 17696937 C T RAD51AP2 Missense_Mutation p.D916N 0.26 deleterious(0.04) benign(0.023) TCGA-FR-A726-01 2 17699687 17699687 G A RAD51AP2 5'UTR 0.32 TCGA-FR-A726-01 2 178682626 178682626 C T PDE11A Missense_Mutation p.D535N 0.28 tolerated(0.31) probably_damaging(0.995) TCGA-FR-A726-01 2 179193096 179193096 C A OSBPL6 Silent p.G103G 0.28 TCGA-FR-A726-01 2 179201082 179201082 C T OSBPL6 Missense_Mutation p.P238S 0.32 tolerated(0.42) possibly_damaging(0.885) TCGA-FR-A726-01 2 179325723 179325723 G A DFNB59 Missense_Mutation p.D261N 0.29 tolerated(0.1) benign(0.081) TCGA-FR-A726-01 2 179368610 179368610 C T PLEKHA3 Missense_Mutation p.S300F 0.30 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FR-A726-01 2 179395249 179395249 C T TTN Missense_Mutation p.G35365S 0.30 TCGA-FR-A726-01 2 179398942 179398942 C T TTN Missense_Mutation p.E34134K 0.31 TCGA-FR-A726-01 2 179399672 179399672 C T TTN Missense_Mutation p.M33890I 0.48 TCGA-FR-A726-01 2 179411080 179411080 C T TTN Missense_Mutation p.E31660K 0.29 TCGA-FR-A726-01 2 179413359 179413359 C T TTN Silent p.V30998V 0.28 TCGA-FR-A726-01 2 179414084 179414084 C T TTN Missense_Mutation p.E30757K 0.31 TCGA-FR-A726-01 2 179416423 179416423 C T TTN Missense_Mutation p.E30402K 0.30 TCGA-FR-A726-01 2 179425194 179425194 C G TTN Silent p.T28555T 0.39 TCGA-FR-A726-01 2 179426896 179426896 C T TTN Missense_Mutation p.G27988E 0.22 TCGA-FR-A726-01 2 179428324 179428324 T G TTN Missense_Mutation p.E27512A 0.30 TCGA-FR-A726-01 2 179430071 179430071 C T TTN Missense_Mutation p.E26930K 0.29 TCGA-FR-A726-01 2 179432606 179432606 C T TTN Missense_Mutation p.A26085T 0.36 TCGA-FR-A726-01 2 179434351 179434351 T G TTN Missense_Mutation p.E25503A 0.28 TCGA-FR-A726-01 2 179435476 179435476 G A TTN Missense_Mutation p.S25128L 0.31 TCGA-FR-A726-01 2 179438274 179438274 G A TTN Silent p.F24195F 0.31 TCGA-FR-A726-01 2 179444428 179444428 C T TTN Missense_Mutation p.R22499Q 0.33 TCGA-FR-A726-01 2 179451268 179451268 C T TTN Missense_Mutation p.E21454K 0.35 TCGA-FR-A726-01 2 179452849 179452849 C T TTN Silent p.P21095P 0.31 TCGA-FR-A726-01 2 179458093 179458093 G A TTN Silent p.I19614I 0.34 TCGA-FR-A726-01 2 179458925 179458925 G A TTN Nonsense_Mutation p.R19399* 0.40 TCGA-FR-A726-01 2 179463999 179463999 C T TTN Missense_Mutation p.E18841K 0.11 TCGA-FR-A726-01 2 179464000 179464000 C T TTN Silent p.K18840K 0.10 TCGA-FR-A726-01 2 179466641 179466641 C T TTN Missense_Mutation p.D18424N 0.41 TCGA-FR-A726-01 2 179468825 179468825 G A TTN Missense_Mutation p.P18197S 0.31 TCGA-FR-A726-01 2 179469442 179469442 C T TTN Missense_Mutation p.R18125K 0.26 TCGA-FR-A726-01 2 179470324 179470324 C T TTN Missense_Mutation p.E17900K 0.34 TCGA-FR-A726-01 2 179477782 179477782 C T TTN Missense_Mutation p.G16556R 0.32 TCGA-FR-A726-01 2 179479455 179479455 C T TTN Silent p.V16262V 0.30 TCGA-FR-A726-01 2 179485543 179485543 C T TTN Missense_Mutation p.R15265K 0.38 TCGA-FR-A726-01 2 179487441 179487441 C T TTN Missense_Mutation p.E14957K 0.29 TCGA-FR-A726-01 2 179496982 179496982 C T TTN Missense_Mutation p.E14547K 0.40 TCGA-FR-A726-01 2 179500199 179500199 C T TTN Missense_Mutation p.G13951E 0.40 TCGA-FR-A726-01 2 179507021 179507021 G A TTN Missense_Mutation p.R13501C 0.21 TCGA-FR-A726-01 2 179516472 179516472 G A TTN Silent p.T13128T 0.44 TCGA-FR-A726-01 2 179516473 179516473 G A TTN Missense_Mutation p.T13128I 0.44 TCGA-FR-A726-01 2 179523438 179523438 G A TTN Missense_Mutation p.P12513S 0.23 TCGA-FR-A726-01 2 179531975 179531975 G A TTN Missense_Mutation p.P11929S 0.32 TCGA-FR-A726-01 2 179532199 179532199 G A TTN Missense_Mutation p.P11895S 0.29 TCGA-FR-A726-01 2 179542519 179542519 C T TTN Missense_Mutation p.E11374K 0.40 TCGA-FR-A726-01 2 179560996 179560996 G A TTN Missense_Mutation p.A10268V 0.30 TCGA-FR-A726-01 2 179571376 179571376 C T TTN Missense_Mutation p.G9742E 0.31 TCGA-FR-A726-01 2 179574293 179574293 C T TTN Missense_Mutation p.E9585K 0.34 TCGA-FR-A726-01 2 179577224 179577224 G A TTN Missense_Mutation p.S9142L 0.35 TCGA-FR-A726-01 2 179577262 179577262 C T TTN Silent p.L9129L 0.36 TCGA-FR-A726-01 2 179582050 179582050 C T TTN Missense_Mutation p.E8471K 0.40 TCGA-FR-A726-01 2 179582441 179582441 T C TTN Missense_Mutation p.E8387G 0.26 TCGA-FR-A726-01 2 179582444 179582444 G C TTN Nonsense_Mutation p.S8386* 0.24 TCGA-FR-A726-01 2 179582451 179582451 T C TTN Missense_Mutation p.N8384D 0.26 TCGA-FR-A726-01 2 179583539 179583539 C T TTN Missense_Mutation p.D8130N 0.33 TCGA-FR-A726-01 2 179584073 179584073 G A TTN Missense_Mutation p.S8015L 0.33 TCGA-FR-A726-01 2 179584992 179584992 C T TTN Splice_Site p.X7793_splice 0.36 TCGA-FR-A726-01 2 179585377 179585377 G A TTN Silent p.F7704F 0.26 TCGA-FR-A726-01 2 179587513 179587513 G A TTN Silent p.T7371T 0.38 TCGA-FR-A726-01 2 179588293 179588293 C T TTN Silent p.V7178V 0.24 TCGA-FR-A726-01 2 179592872 179592872 C T TTN Missense_Mutation p.G6560E 0.31 TCGA-FR-A726-01 2 179594114 179594114 G A TTN Missense_Mutation p.H6257Y 0.42 TCGA-FR-A726-01 2 179594547 179594547 C T TTN Missense_Mutation p.E6145K 0.39 TCGA-FR-A726-01 2 179594622 179594622 C T TTN Missense_Mutation p.G6120R 0.33 TCGA-FR-A726-01 2 179595841 179595841 C T TTN Missense_Mutation p.E5851K 0.06 TCGA-FR-A726-01 2 179596618 179596618 C T TTN Missense_Mutation p.G5662S 0.29 TCGA-FR-A726-01 2 179597446 179597446 C T TTN Splice_Site p.X5448_splice 0.24 TCGA-FR-A726-01 2 179597748 179597748 G A TTN Silent p.P5385P 0.28 TCGA-FR-A726-01 2 179599583 179599583 C T TTN Missense_Mutation p.S5023N 0.35 TCGA-FR-A726-01 2 179605631 179605631 C T TTN Missense_Mutation p.G4110E 0.37 TCGA-FR-A726-01 2 179611341 179611341 C T TTN Intron 0.38 TCGA-FR-A726-01 2 179611541 179611541 C T TTN Intron 0.32 TCGA-FR-A726-01 2 179612736 179612736 C T TTN Intron 0.32 TCGA-FR-A726-01 2 179613553 179613553 G A TTN Intron 0.28 TCGA-FR-A726-01 2 179613870 179613870 T C TTN Intron 0.38 TCGA-FR-A726-01 2 179632562 179632562 C T TTN Missense_Mutation p.G3132E 0.38 TCGA-FR-A726-01 2 179632764 179632764 G A TTN Silent p.D3094D 0.25 TCGA-FR-A726-01 2 179634635 179634635 G A TTN Silent p.I2891I 0.32 TCGA-FR-A726-01 2 179640794 179640794 C T TTN Missense_Mutation p.E1933K 0.35 TCGA-FR-A726-01 2 179641759 179641759 C T TTN Missense_Mutation p.G1611E 0.31 TCGA-FR-A726-01 2 179642463 179642463 C T TTN Missense_Mutation p.R1483K 0.27 TCGA-FR-A726-01 2 179642700 179642700 G A TTN Missense_Mutation p.S1404F 0.31 TCGA-FR-A726-01 2 179664232 179664232 G A TTN Missense_Mutation p.P299L 0.42 TCGA-FR-A726-01 2 179702337 179702337 C T CCDC141 Silent p.G1203G 0.29 TCGA-FR-A726-01 2 179718276 179718276 C T CCDC141 Missense_Mutation p.E1046K 0.21 deleterious(0.02) possibly_damaging(0.519) TCGA-FR-A726-01 2 180634525 180634525 C T ZNF385B 5'UTR 0.23 TCGA-FR-A726-01 2 18112578 18112578 G A KCNS3 Silent p.Q101Q 0.36 TCGA-FR-A726-01 2 18112945 18112945 G T KCNS3 Nonsense_Mutation p.G224* 0.34 TCGA-FR-A726-01 2 182413445 182413445 C T CERKL Silent p.R371R 0.33 TCGA-FR-A726-01 2 182766759 182766759 C T SSFA2 Silent p.L327L 0.33 TCGA-FR-A726-01 2 183011832 183011832 C T PDE1A Missense_Mutation p.E538K 0.37 deleterious_low_confidence(0.04) benign(0.208) TCGA-FR-A726-01 2 183104888 183104888 G A PDE1A Missense_Mutation p.P116L 0.33 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 2 183291481 183291481 C T PDE1A Intron 0.26 TCGA-FR-A726-01 2 185800578 185800578 C T ZNF804A Missense_Mutation p.S152F 0.43 tolerated(0.57) probably_damaging(0.986) TCGA-FR-A726-01 2 185801027 185801027 G A ZNF804A Missense_Mutation p.E302K 0.41 tolerated(0.17) probably_damaging(0.971) TCGA-FR-A726-01 2 185802121 185802121 C T ZNF804A Silent p.S666S 0.27 TCGA-FR-A726-01 2 185802482 185802482 C T ZNF804A Nonsense_Mutation p.R787* 0.35 TCGA-FR-A726-01 2 186672472 186672472 G A FSIP2 Missense_Mutation p.E6236K 0.35 benign(0.236) TCGA-FR-A726-01 2 187370230 187370230 C A ZC3H15 Missense_Mutation p.A257D 0.29 deleterious(0.01) possibly_damaging(0.517) TCGA-FR-A726-01 2 187626849 187626849 C T FAM171B Missense_Mutation p.H594Y 0.38 tolerated(0.06) possibly_damaging(0.811) TCGA-FR-A726-01 2 187627229 187627229 C T FAM171B Silent p.L720L 0.31 TCGA-FR-A726-01 2 187627529 187627529 C T FAM171B Silent p.R820R 0.37 TCGA-FR-A726-01 2 18765453 18765453 C T NT5C1B Silent p.R324R 0.39 TCGA-FR-A726-01 2 18765854 18765854 C T NT5C1B Missense_Mutation p.D277N 0.23 deleterious_low_confidence(0.02) benign(0.005) TCGA-FR-A726-01 2 18765976 18765976 G A NT5C1B Missense_Mutation p.S236L 0.28 deleterious_low_confidence(0.01) benign(0.028) TCGA-FR-A726-01 2 188211077 188211077 C T CALCRL Missense_Mutation p.G407E 0.44 tolerated(0.15) benign(0.027) TCGA-FR-A726-01 2 188247934 188247934 T C CALCRL Silent p.Q50Q 0.32 TCGA-FR-A726-01 2 188247981 188247981 C T CALCRL Missense_Mutation p.G35R 0.30 tolerated(0.22) benign(0.016) TCGA-FR-A726-01 2 188332479 188332479 C T TFPI Splice_Site p.X270_splice 0.31 TCGA-FR-A726-01 2 189342429 189342429 C T GULP1 5'UTR 0.27 TCGA-FR-A726-01 2 189859813 189859813 C T COL3A1 Silent p.I499I 0.34 TCGA-FR-A726-01 2 189862072 189862072 G A COL3A1 Missense_Mutation p.G609E 0.27 unknown(0) TCGA-FR-A726-01 2 189870933 189870933 G A COL3A1 Missense_Mutation p.G1014E 0.31 probably_damaging(1) TCGA-FR-A726-01 2 189928722 189928722 C T COL5A2 Missense_Mutation p.G585E 0.30 probably_damaging(1) TCGA-FR-A726-01 2 189929335 189929335 C T COL5A2 Missense_Mutation p.G555E 0.33 probably_damaging(1) TCGA-FR-A726-01 2 189929336 189929336 C T COL5A2 Missense_Mutation p.G555R 0.33 probably_damaging(1) TCGA-FR-A726-01 2 191896189 191896189 G A STAT4 Missense_Mutation p.P700S 0.29 tolerated(1) benign(0.009) TCGA-FR-A726-01 2 191922832 191922832 C T STAT4 Missense_Mutation p.R373Q 0.32 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 2 191923489 191923489 T C STAT4 Silent p.L347L 0.26 TCGA-FR-A726-01 2 191931171 191931171 G A STAT4 Silent p.L205L 0.26 TCGA-FR-A726-01 2 192012845 192012845 C T STAT4 Missense_Mutation p.E29K 0.39 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A726-01 2 192225374 192225374 C T MYO1B Missense_Mutation p.R194W 0.05 deleterious(0) probably_damaging(0.952) TCGA-FR-A726-01 2 192288756 192288756 G A MYO1B 3'UTR 0.36 TCGA-FR-A726-01 2 192821105 192821105 C T TMEFF2 Splice_Site p.X249_splice 0.36 TCGA-FR-A726-01 2 193049153 193049153 C T TMEFF2 Silent p.E113E 0.78 TCGA-FR-A726-01 2 193056676 193056676 G A TMEFF2 Missense_Mutation p.T71I 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-FR-A726-01 2 196544841 196544841 C T SLC39A10 Silent p.C25C 0.26 TCGA-FR-A726-01 2 196599676 196599676 C T SLC39A10 Missense_Mutation p.L803F 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 196640651 196640651 G A DNAH7 Silent p.I3707I 0.30 TCGA-FR-A726-01 2 196699017 196699017 C T DNAH7 Missense_Mutation p.E3005K 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 196709855 196709855 C T DNAH7 Missense_Mutation p.G2939E 0.33 tolerated(1) benign(0) TCGA-FR-A726-01 2 196749427 196749427 G A DNAH7 Missense_Mutation p.S1882L 0.40 tolerated(0.19) benign(0.005) TCGA-FR-A726-01 2 196771633 196771633 C T DNAH7 Missense_Mutation p.R1402K 0.32 deleterious(0.01) possibly_damaging(0.768) TCGA-FR-A726-01 2 196788394 196788394 G A DNAH7 Silent p.L1250L 0.35 TCGA-FR-A726-01 2 197183963 197183963 C T HECW2 Missense_Mutation p.E551K 0.37 tolerated_low_confidence(0.3) benign(0.039) TCGA-FR-A726-01 2 197183998 197183998 C T HECW2 Missense_Mutation p.S539N 0.32 tolerated_low_confidence(0.4) benign(0.006) TCGA-FR-A726-01 2 197590758 197590758 C T CCDC150 Silent p.L831L 0.24 TCGA-FR-A726-01 2 198274712 198274712 G A SF3B1 Missense_Mutation p.S229F 0.26 deleterious(0.02) benign(0.19) TCGA-FR-A726-01 2 198351898 198351898 C A HSPD1 Missense_Mutation p.A532S 0.29 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 2 198948679 198948679 G A PLCL1 Nonsense_Mutation p.W146* 0.42 TCGA-FR-A726-01 2 200173566 200173566 C T SATB2 Missense_Mutation p.D553N 0.35 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 2 200193480 200193480 G A SATB2 Missense_Mutation p.P443S 0.42 tolerated_low_confidence(0.16) benign(0.032) TCGA-FR-A726-01 2 201527596 201527596 G A AOX1 Missense_Mutation p.M1149I 0.31 tolerated(0.17) benign(0.026) TCGA-FR-A726-01 2 202002397 202002397 C T CFLAR Intron 0.43 TCGA-FR-A726-01 2 202002601 202002601 C T CFLAR Intron 0.30 TCGA-FR-A726-01 2 20205796 20205796 G A MATN3 Nonsense_Mutation p.Q167* 0.19 TCGA-FR-A726-01 2 202082418 202082418 G A CASP10 Missense_Mutation p.R508K 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-FR-A726-01 2 202899514 202899514 C T FZD7 Silent p.F48F 0.29 TCGA-FR-A726-01 2 202900822 202900822 C T FZD7 Silent p.I484I 0.30 TCGA-FR-A726-01 2 203424759 203424759 C T BMPR2 3'UTR 0.33 TCGA-FR-A726-01 2 20402599 20402599 G A SDC1 Silent p.S287S 0.33 TCGA-FR-A726-01 2 20402600 20402600 G A SDC1 Missense_Mutation p.S287F 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 204045175 204045175 G A NBEAL1 Missense_Mutation p.D2150N 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 204143381 204143381 C T CYP20A1 Silent p.S255S 0.19 TCGA-FR-A726-01 2 205990405 205990405 G A PARD3B Missense_Mutation p.E460K 0.33 deleterious(0.02) possibly_damaging(0.678) TCGA-FR-A726-01 2 206640967 206640967 C T NRP2 Intron 0.36 TCGA-FR-A726-01 2 206641085 206641085 C T NRP2 Intron 0.38 TCGA-FR-A726-01 2 207146584 207146584 G A ZDBF2 Missense_Mutation p.R4K 0.23 tolerated(0.23) benign(0.22) TCGA-FR-A726-01 2 207170001 207170001 C T ZDBF2 Missense_Mutation p.S250L 0.33 tolerated(0.17) benign(0) TCGA-FR-A726-01 2 207170179 207170179 C T ZDBF2 Silent p.N309N 0.27 TCGA-FR-A726-01 2 207171302 207171302 G A ZDBF2 Missense_Mutation p.E684K 0.45 tolerated(0.13) possibly_damaging(0.692) TCGA-FR-A726-01 2 207173693 207173693 G A ZDBF2 Missense_Mutation p.E1481K 0.30 tolerated(0.33) benign(0.292) TCGA-FR-A726-01 2 207174070 207174070 G A ZDBF2 Silent p.R1606R 0.35 TCGA-FR-A726-01 2 207583059 207583059 A G DYTN 5'UTR 0.24 TCGA-FR-A726-01 2 207834013 207834013 C T CPO Silent p.I326I 0.42 TCGA-FR-A726-01 2 208866124 208866124 G A PLEKHM3 Silent p.L80L 0.27 TCGA-FR-A726-01 2 208866432 208866432 A G PLEKHM3 5'UTR 0.26 TCGA-FR-A726-01 2 208866464 208866464 G A PLEKHM3 5'UTR 0.32 TCGA-FR-A726-01 2 209190269 209190269 C T PIKFYVE Missense_Mutation p.P912S 0.31 tolerated_low_confidence(0.86) benign(0) TCGA-FR-A726-01 2 209307097 209307097 C T PTH2R Silent p.F140F 0.32 TCGA-FR-A726-01 2 210642037 210642037 G A UNC80 Nonsense_Mutation p.W118* 0.26 TCGA-FR-A726-01 2 210642052 210642052 C T UNC80 Silent p.A123A 0.25 TCGA-FR-A726-01 2 211018499 211018499 G A KANSL1L Missense_Mutation p.P270S 0.34 tolerated(0.1) possibly_damaging(0.897) TCGA-FR-A726-01 2 211018516 211018516 G A KANSL1L Missense_Mutation p.S264F 0.29 tolerated(1) probably_damaging(0.996) TCGA-FR-A726-01 2 211019170 211019170 G A KANSL1L Missense_Mutation p.S46F 0.10 deleterious(0) probably_damaging(0.956) TCGA-FR-A726-01 2 211159126 211159126 T A MYL1 Missense_Mutation p.K107N 0.41 tolerated(0.13) possibly_damaging(0.741) TCGA-FR-A726-01 2 211467019 211467019 C T CPS1 Missense_Mutation p.P607S 0.36 tolerated(0.39) benign(0.004) TCGA-FR-A726-01 2 211518791 211518791 G A CPS1 Missense_Mutation p.E1181K 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 211542673 211542673 C T CPS1 Silent p.F1495F 0.27 TCGA-FR-A726-01 2 21224519 21224519 C T APOB 3'UTR 0.25 TCGA-FR-A726-01 2 212248423 212248423 G A ERBB4 Missense_Mutation p.P1282S 0.36 deleterious(0.05) benign(0.066) TCGA-FR-A726-01 2 21225676 21225676 C T APOB Silent p.G4206G 0.27 TCGA-FR-A726-01 2 21225822 21225822 G A APOB Nonsense_Mutation p.Q4158* 0.32 TCGA-FR-A726-01 2 21225942 21225942 C T APOB Missense_Mutation p.G4118R 0.37 benign(0.002) TCGA-FR-A726-01 2 21228576 21228576 G A APOB Missense_Mutation p.P3722S 0.31 probably_damaging(0.999) TCGA-FR-A726-01 2 212288973 212288973 G A ERBB4 Missense_Mutation p.P925S 0.30 tolerated(0.07) benign(0.082) TCGA-FR-A726-01 2 21229450 21229450 T A APOB Missense_Mutation p.K3430N 0.23 benign(0.008) TCGA-FR-A726-01 2 21234982 21234982 C T APOB Silent p.K1586K 0.37 TCGA-FR-A726-01 2 21250925 21250925 T C APOB Silent p.L614L 0.08 TCGA-FR-A726-01 2 212522689 212522689 G A ERBB4 Intron 0.25 TCGA-FR-A726-01 2 21252650 21252650 C T APOB Missense_Mutation p.G493E 0.34 probably_damaging(1) TCGA-FR-A726-01 2 212566827 212566827 C T ERBB4 Missense_Mutation p.E452K 0.33 deleterious(0) benign(0.206) TCGA-FR-A726-01 2 213872177 213872177 C T IKZF2 Silent p.R496R 0.32 TCGA-FR-A726-01 2 213872178 213872178 C T IKZF2 Missense_Mutation p.R496Q 0.32 deleterious(0) possibly_damaging(0.656) TCGA-FR-A726-01 2 213872376 213872376 C T IKZF2 Missense_Mutation p.R430K 0.07 tolerated(0.92) benign(0.05) TCGA-FR-A726-01 2 214204927 214204927 G A SPAG16 Missense_Mutation p.D193N 0.14 deleterious(0) probably_damaging(0.927) TCGA-FR-A726-01 2 214794833 214794833 C T SPAG16 Missense_Mutation p.S455L 0.43 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 215633991 215633991 G A BARD1 Missense_Mutation p.P454S 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 215645367 215645367 G A BARD1 Missense_Mutation p.P411S 0.25 deleterious(0.03) benign(0.314) TCGA-FR-A726-01 2 215865496 215865496 C T ABCA12 Missense_Mutation p.G1038R 0.26 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 2 217724245 217724245 C T TNP1 3'UTR 0.29 TCGA-FR-A726-01 2 218682829 218682829 C T TNS1 Missense_Mutation p.G1305E 0.26 tolerated(0.1) benign(0.19) TCGA-FR-A726-01 2 218682830 218682830 C T TNS1 Missense_Mutation p.G1305R 0.26 tolerated(0.06) benign(0.292) TCGA-FR-A726-01 2 218713453 218713453 G A TNS1 Missense_Mutation p.S471L 0.30 tolerated(0.19) benign(0) TCGA-FR-A726-01 2 218924864 218924864 G A CXCR2P1 RNA 0.46 TCGA-FR-A726-01 2 219131236 219131236 G A AAMP Silent p.V203V 0.39 TCGA-FR-A726-01 2 219229381 219229381 G A C2orf62 Missense_Mutation p.D221N 0.34 tolerated(0.07) benign(0.002) TCGA-FR-A726-01 2 219254685 219254685 T C SLC11A1 Silent p.F296F 0.17 TCGA-FR-A726-01 2 219294332 219294332 C T VIL1 Silent p.S261S 0.31 TCGA-FR-A726-01 2 219297618 219297618 G A VIL1 Missense_Mutation p.G482S 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A726-01 2 220111939 220111939 G C STK16 Missense_Mutation p.E137D 0.09 deleterious(0.01) benign(0.07) TCGA-FR-A726-01 2 220166419 220166419 G A PTPRN Silent p.A339A 0.28 TCGA-FR-A726-01 2 220286272 220286272 G A DES Missense_Mutation p.E412K 0.08 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 2 220315951 220315951 G A SPEG Missense_Mutation p.G736E 0.35 probably_damaging(0.998) TCGA-FR-A726-01 2 220341617 220341617 G A SPEG Missense_Mutation p.M1491I 0.08 possibly_damaging(0.68) TCGA-FR-A726-01 2 220346385 220346385 G A SPEG Missense_Mutation p.E1850K 0.31 benign(0.063) TCGA-FR-A726-01 2 220347517 220347517 G A SPEG Silent p.K1859K 0.20 TCGA-FR-A726-01 2 220369990 220369990 C T GMPPA Missense_Mutation p.R221C 0.36 deleterious(0.03) benign(0.179) TCGA-FR-A726-01 2 220466127 220466127 C T STK11IP Missense_Mutation p.L89F 0.33 deleterious(0) possibly_damaging(0.603) TCGA-FR-A726-01 2 222290592 222290592 A C EPHA4 3'UTR 0.28 TCGA-FR-A726-01 2 222291234 222291234 G A EPHA4 Silent p.F932F 0.24 TCGA-FR-A726-01 2 222429090 222429090 C T EPHA4 Missense_Mutation p.E62K 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A726-01 2 223161726 223161726 G A PAX3 Missense_Mutation p.P98S 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 223436530 223436530 G A FARSB 3'UTR 0.22 TCGA-FR-A726-01 2 223464735 223464735 G A FARSB Silent p.I510I 0.38 TCGA-FR-A726-01 2 223484396 223484396 G A FARSB Missense_Mutation p.H438Y 0.29 tolerated(0.35) possibly_damaging(0.561) TCGA-FR-A726-01 2 223773609 223773609 C T ACSL3 Missense_Mutation p.P40L 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A726-01 2 224770686 224770686 C T WDFY1 Missense_Mutation p.M104I 0.31 tolerated(0.29) benign(0.061) TCGA-FR-A726-01 2 225684176 225684176 G A DOCK10 Missense_Mutation p.S1085F 0.26 tolerated(0.06) possibly_damaging(0.52) TCGA-FR-A726-01 2 226447398 226447398 G A NYAP2 Missense_Mutation p.R422Q 0.39 tolerated(0.1) probably_damaging(0.997) TCGA-FR-A726-01 2 226447442 226447442 C T NYAP2 Missense_Mutation p.P437S 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A726-01 2 227660967 227660967 G A IRS1 Missense_Mutation p.P830S 0.38 tolerated(0.23) benign(0.003) TCGA-FR-A726-01 2 227871793 227871793 C T COL4A4 3'UTR 0.30 TCGA-FR-A726-01 2 227886809 227886809 C T COL4A4 Missense_Mutation p.E1391K 0.35 unknown(0) TCGA-FR-A726-01 2 227915865 227915865 C T COL4A4 Missense_Mutation p.G993E 0.35 unknown(0) TCGA-FR-A726-01 2 227966265 227966265 T C COL4A4 Silent p.L328L 0.33 TCGA-FR-A726-01 2 228141158 228141158 G A COL4A3 Missense_Mutation p.G662E 0.31 unknown(0) TCGA-FR-A726-01 2 228144557 228144557 A G COL4A3 Missense_Mutation p.K725R 0.37 unknown(0) TCGA-FR-A726-01 2 228564074 228564074 G A SLC19A3 Silent p.A119A 0.06 TCGA-FR-A726-01 2 228846481 228846481 C T SPHKAP Silent p.Q1685Q 0.40 TCGA-FR-A726-01 2 228881276 228881276 C T SPHKAP Missense_Mutation p.E1432K 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 228882420 228882420 C T SPHKAP Silent p.T1050T 0.33 TCGA-FR-A726-01 2 228882449 228882449 C T SPHKAP Missense_Mutation p.E1041K 0.35 deleterious(0) probably_damaging(0.945) TCGA-FR-A726-01 2 228882759 228882759 G A SPHKAP Silent p.V937V 0.37 TCGA-FR-A726-01 2 228883793 228883793 C T SPHKAP Missense_Mutation p.A593T 0.33 tolerated(0.08) benign(0.126) TCGA-FR-A726-01 2 228884353 228884353 C T SPHKAP Missense_Mutation p.R406K 0.31 tolerated(0.09) probably_damaging(0.987) TCGA-FR-A726-01 2 230231717 230231717 G A DNER Silent p.I658I 0.32 TCGA-FR-A726-01 2 230875575 230875575 G A FBXO36 Missense_Mutation p.G181E 0.20 tolerated(0.16) benign(0.066) TCGA-FR-A726-01 2 231101867 231101867 C T SP140 Silent p.F43F 0.41 TCGA-FR-A726-01 2 231175881 231175881 C T SP140 Missense_Mutation p.L766F 0.21 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 2 231177390 231177390 G A SP140 Silent p.G865G 0.38 TCGA-FR-A726-01 2 231248236 231248236 G A SP140L Missense_Mutation p.G217R 0.21 tolerated(0.3) possibly_damaging(0.781) TCGA-FR-A726-01 2 231267518 231267518 G A SP140L Silent p.K550K 0.08 TCGA-FR-A726-01 2 231774727 231774727 G A GPR55 Silent p.S317S 0.34 TCGA-FR-A726-01 2 231988227 231988227 C T HTR2B Silent p.K84K 0.36 TCGA-FR-A726-01 2 232003466 232003466 C T PSMD1 Missense_Mutation p.P634S 0.29 deleterious(0.02) possibly_damaging(0.588) TCGA-FR-A726-01 2 232263148 232263148 G A B3GNT7 Missense_Mutation p.D240N 0.44 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 232321806 232321806 G A NCL Missense_Mutation p.L493F 0.25 probably_damaging(0.998) TCGA-FR-A726-01 2 233198649 233198649 C T DIS3L2 Missense_Mutation p.R704C 0.30 deleterious(0) probably_damaging(0.932) TCGA-FR-A726-01 2 233271553 233271553 C T ALPPL2 5'UTR 0.46 TCGA-FR-A726-01 2 233274325 233274325 G A ALPPL2 Missense_Mutation p.G448R 0.32 deleterious(0.05) benign(0.009) TCGA-FR-A726-01 2 233323090 233323090 C G ALPI Silent p.G385G 0.30 TCGA-FR-A726-01 2 233393298 233393298 C T CHRND Silent p.F147F 0.27 TCGA-FR-A726-01 2 233408410 233408410 G A CHRNG Splice_Site p.X345_splice 0.24 TCGA-FR-A726-01 2 234078699 234078699 C T INPP5D Silent p.L548L 0.30 TCGA-FR-A726-01 2 234197457 234197457 C T ATG16L1 Intron 0.37 TCGA-FR-A726-01 2 234243682 234243682 G A SAG Missense_Mutation p.R294K 0.09 tolerated(1) benign(0.063) TCGA-FR-A726-01 2 234247373 234247373 G A SAG Silent p.Q332Q 0.34 TCGA-FR-A726-01 2 234344536 234344536 C T DGKD Missense_Mutation p.S220L 0.33 deleterious(0.02) benign(0.273) TCGA-FR-A726-01 2 234358761 234358761 G A DGKD Silent p.G674G 0.40 TCGA-FR-A726-01 2 234601955 234601955 G A UGT1A6 Missense_Mutation p.R102Q 0.27 tolerated(0.85) possibly_damaging(0.603) TCGA-FR-A726-01 2 234621827 234621827 G A UGT1A5 Missense_Mutation p.E64K 0.38 deleterious(0.03) possibly_damaging(0.85) TCGA-FR-A726-01 2 234622415 234622415 G A UGT1A5 Missense_Mutation p.D260N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A726-01 2 234638479 234638479 C T UGT1A3 Missense_Mutation p.S236F 0.36 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 2 234652376 234652376 C T UGT1A10 Intron 0.31 TCGA-FR-A726-01 2 234752853 234752853 G A HJURP Missense_Mutation p.P191L 0.29 tolerated(0.72) benign(0.041) TCGA-FR-A726-01 2 234855796 234855796 G A TRPM8 Silent p.L313L 0.32 TCGA-FR-A726-01 2 234869453 234869453 C T TRPM8 Missense_Mutation p.L466F 0.32 deleterious(0) possibly_damaging(0.516) TCGA-FR-A726-01 2 234975211 234975211 G A SPP2 Nonsense_Mutation p.W160* 0.31 TCGA-FR-A726-01 2 237032685 237032685 C T AGAP1 Silent p.F831F 0.24 TCGA-FR-A726-01 2 237075029 237075029 G A GBX2 Missense_Mutation p.P192L 0.30 tolerated(0.18) benign(0.007) TCGA-FR-A726-01 2 237276915 237276915 G A IQCA1 Missense_Mutation p.R531C 0.32 deleterious(0.01) benign(0.076) TCGA-FR-A726-01 2 237349767 237349767 T G IQCA1 Missense_Mutation p.R309S 0.33 deleterious(0) benign(0.403) TCGA-FR-A726-01 2 238244836 238244836 G A COL6A3 Silent p.V2969V 0.30 TCGA-FR-A726-01 2 238253148 238253148 C T COL6A3 Missense_Mutation p.G2505R 0.37 unknown(0) TCGA-FR-A726-01 2 238259834 238259834 C T COL6A3 Missense_Mutation p.G2252E 0.24 unknown(0) TCGA-FR-A726-01 2 238275852 238275852 G A COL6A3 Missense_Mutation p.R1660C 0.36 probably_damaging(0.935) TCGA-FR-A726-01 2 238280478 238280478 G A COL6A3 Silent p.F1394F 0.30 TCGA-FR-A726-01 2 238285527 238285527 G A COL6A3 Silent p.I986I 0.34 TCGA-FR-A726-01 2 238289897 238289897 C T COL6A3 Missense_Mutation p.G520S 0.28 probably_damaging(0.972) TCGA-FR-A726-01 2 239102963 239102963 C T ILKAP Missense_Mutation p.G44E 0.19 tolerated(0.19) benign(0.033) TCGA-FR-A726-01 2 239140724 239140724 G A AC016757.3 5'Flank 0.21 TCGA-FR-A726-01 2 239140725 239140725 G A AC016757.3 5'Flank 0.21 TCGA-FR-A726-01 2 241622208 241622208 G A AQP12B Missense_Mutation p.T16I 0.16 tolerated(0.12) benign(0.017) TCGA-FR-A726-01 2 241689958 241689958 G A KIF1A Silent p.F955F 0.31 TCGA-FR-A726-01 2 241712580 241712580 G A KIF1A Silent p.T377T 0.27 TCGA-FR-A726-01 2 241829548 241829548 C T C2orf54 Silent p.R256R 0.29 TCGA-FR-A726-01 2 241969736 241969736 G A SNED1 Silent p.E83E 0.32 TCGA-FR-A726-01 2 241969901 241969901 C T SNED1 Silent p.F138F 0.31 TCGA-FR-A726-01 2 241991543 241991543 C T SNED1 Silent p.P646P 0.24 TCGA-FR-A726-01 2 241992720 241992720 G A SNED1 Nonsense_Mutation p.W745* 0.36 TCGA-FR-A726-01 2 242277170 242277170 C T SEPT2 Missense_Mutation p.L187F 0.32 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 2 242380843 242380843 C T FARP2 Missense_Mutation p.S428F 0.44 tolerated(0.07) benign(0.009) TCGA-FR-A726-01 2 242423731 242423731 C T FARP2 Silent p.P802P 0.28 TCGA-FR-A726-01 2 242524138 242524138 G A THAP4 Silent p.I539I 0.33 TCGA-FR-A726-01 2 242664513 242664513 C T ING5 3'UTR 0.43 TCGA-FR-A726-01 2 242755795 242755795 C T NEU4 Silent p.A51A 0.12 TCGA-FR-A726-01 2 242757982 242757982 G A NEU4 Missense_Mutation p.G368R 0.16 tolerated(0.19) benign(0.146) TCGA-FR-A726-01 2 242814458 242814458 G A CXXC11 Missense_Mutation p.D251N 0.42 tolerated(0.86) benign(0.101) TCGA-FR-A726-01 2 242814517 242814517 C T CXXC11 Silent p.F270F 0.34 TCGA-FR-A726-01 2 24344073 24344073 C T PFN4 Missense_Mutation p.R72K 0.23 tolerated(1) benign(0) TCGA-FR-A726-01 2 24431167 24431167 G A ITSN2 Silent p.I1539I 0.08 TCGA-FR-A726-01 2 25384020 25384020 T C POMC Missense_Mutation p.K245R 0.36 tolerated(1) benign(0.255) TCGA-FR-A726-01 2 25384439 25384439 C T POMC Silent p.E105E 0.33 TCGA-FR-A726-01 2 25469526 25469526 G A DNMT3A Silent p.F414F 0.33 TCGA-FR-A726-01 2 25505441 25505441 G A DNMT3A Missense_Mutation p.P106L 0.20 tolerated(0.22) benign(0.012) TCGA-FR-A726-01 2 25966368 25966368 G A ASXL2 Silent p.I946I 0.31 TCGA-FR-A726-01 2 26535889 26535889 C T GPR113 Silent p.L525L 0.37 TCGA-FR-A726-01 2 26624828 26624828 G A DRC1 5'UTR 0.41 TCGA-FR-A726-01 2 26652495 26652495 G A DRC1 Splice_Site p.X181_splice 0.35 TCGA-FR-A726-01 2 26667678 26667678 G A DRC1 Missense_Mutation p.D420N 0.30 tolerated(0.06) probably_damaging(0.945) TCGA-FR-A726-01 2 26684741 26684741 C T OTOF Missense_Mutation p.E1786K 0.23 deleterious(0) possibly_damaging(0.504) TCGA-FR-A726-01 2 26689628 26689628 G A OTOF Missense_Mutation p.P1485L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 26702507 26702507 C T OTOF Missense_Mutation p.E643K 0.33 tolerated(0.84) benign(0.001) TCGA-FR-A726-01 2 26798945 26798945 G A C2orf70 Missense_Mutation p.E84K 0.29 tolerated(0.88) benign(0) TCGA-FR-A726-01 2 27306173 27306173 G A EMILIN1 Silent p.G578G 0.26 TCGA-FR-A726-01 2 27427439 27427439 G A SLC5A6 Missense_Mutation p.P299S 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-FR-A726-01 2 27430483 27430483 G A SLC5A6 Silent p.S12S 0.37 TCGA-FR-A726-01 2 27479738 27479738 G A SLC30A3 Silent p.P267P 0.31 TCGA-FR-A726-01 2 27505636 27505636 G A TRIM54 Missense_Mutation p.D13N 0.36 deleterious(0) possibly_damaging(0.535) TCGA-FR-A726-01 2 27564919 27564919 G A GTF3C2 Nonsense_Mutation p.Q251* 0.12 TCGA-FR-A726-01 2 27672611 27672611 G A IFT172 Silent p.I1369I 0.32 TCGA-FR-A726-01 2 27703969 27703969 G A IFT172 Silent p.F243F 0.34 TCGA-FR-A726-01 2 27716873 27716873 C T FNDC4 Silent p.E126E 0.31 TCGA-FR-A726-01 2 27804174 27804174 G A C2orf16 Missense_Mutation p.E1579K 0.30 tolerated(0.13) unknown(0) TCGA-FR-A726-01 2 27804230 27804230 C T C2orf16 Silent p.N1597N 0.31 TCGA-FR-A726-01 2 27804231 27804231 C T C2orf16 Missense_Mutation p.H1598Y 0.31 tolerated(0.54) unknown(0) TCGA-FR-A726-01 2 27823589 27823589 C T ZNF512 Silent p.I163I 0.29 TCGA-FR-A726-01 2 27997355 27997355 C T MRPL33 Nonsense_Mutation p.R36* 0.35 TCGA-FR-A726-01 2 28719005 28719005 C T PLB1 Silent p.F8F 0.05 TCGA-FR-A726-01 2 28763266 28763266 G A PLB1 Silent p.E244E 0.38 TCGA-FR-A726-01 2 28764663 28764663 C T PLB1 Silent p.T288T 0.23 TCGA-FR-A726-01 2 28852029 28852029 G A PLB1 Silent p.G1265G 0.28 TCGA-FR-A726-01 2 28863796 28863796 G A PLB1 Missense_Mutation p.E1368K 0.25 deleterious(0) probably_damaging(0.971) TCGA-FR-A726-01 2 29225433 29225433 A T FAM179A Silent p.G153G 0.36 TCGA-FR-A726-01 2 29245071 29245071 G A FAM179A Missense_Mutation p.E470K 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-FR-A726-01 2 29259487 29259487 G A FAM179A Missense_Mutation p.M833I 0.33 tolerated(0.05) possibly_damaging(0.574) TCGA-FR-A726-01 2 29268187 29268187 C T FAM179A Intron 0.37 TCGA-FR-A726-01 2 29293988 29293988 C T C2orf71 Missense_Mutation p.R1047Q 0.35 tolerated(0.62) benign(0.014) TCGA-FR-A726-01 2 29296491 29296491 C T C2orf71 Missense_Mutation p.E213K 0.34 tolerated(0.09) possibly_damaging(0.669) TCGA-FR-A726-01 2 29450499 29450499 C T ALK Missense_Mutation p.G952E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 29543642 29543642 C T ALK Silent p.K507K 0.33 TCGA-FR-A726-01 2 29917782 29917782 C T ALK Missense_Mutation p.E296K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-FR-A726-01 2 29917846 29917846 C T ALK Silent p.L274L 0.29 TCGA-FR-A726-01 2 30974111 30974111 G A CAPN13 Missense_Mutation p.P365L 0.23 tolerated(0.68) benign(0.006) TCGA-FR-A726-01 2 30974112 30974112 G A CAPN13 Missense_Mutation p.P365S 0.21 tolerated(0.42) benign(0.016) TCGA-FR-A726-01 2 31598411 31598411 C T XDH Silent p.K479K 0.40 TCGA-FR-A726-01 2 31602740 31602740 C T XDH Missense_Mutation p.S412N 0.34 deleterious(0.01) possibly_damaging(0.899) TCGA-FR-A726-01 2 31604572 31604572 G A XDH Silent p.I353I 0.36 TCGA-FR-A726-01 2 31610704 31610704 C T XDH Silent p.Q208Q 0.23 TCGA-FR-A726-01 2 32352058 32352058 C T SPAST Silent p.L380L 0.28 TCGA-FR-A726-01 2 3392390 3392390 C T TRAPPC12 Silent p.F332F 0.26 TCGA-FR-A726-01 2 3628396 3628396 T C RPS7 Missense_Mutation p.V170A 0.32 tolerated(0.09) benign(0.03) TCGA-FR-A726-01 2 36704088 36704088 C T CRIM1 Nonsense_Mutation p.R350* 0.31 TCGA-FR-A726-01 2 36704143 36704143 C T CRIM1 Missense_Mutation p.T368I 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-FR-A726-01 2 36808492 36808492 G A FEZ2 Missense_Mutation p.S192L 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 2 37035961 37035961 G A VIT Missense_Mutation p.R579K 0.40 tolerated(0.16) benign(0.055) TCGA-FR-A726-01 2 37041370 37041370 G A VIT Missense_Mutation p.E650K 0.36 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 2 37096850 37096850 A G STRN Missense_Mutation p.L449S 0.35 deleterious(0.01) benign(0.269) TCGA-FR-A726-01 2 37208622 37208622 G A HEATR5B 3'UTR 0.35 TCGA-FR-A726-01 2 3726102 3726102 G A ALLC Silent p.G43G 0.40 TCGA-FR-A726-01 2 37398590 37398590 G A SULT6B1 Silent p.F218F 0.31 TCGA-FR-A726-01 2 37415689 37415689 C T SULT6B1 5'UTR 0.35 TCGA-FR-A726-01 2 37480408 37480408 C T PRKD3 Nonsense_Mutation p.W862* 0.35 TCGA-FR-A726-01 2 38178446 38178446 C T RMDN2 Missense_Mutation p.R30C 0.35 deleterious_low_confidence(0) benign(0.276) TCGA-FR-A726-01 2 39088455 39088455 G A DHX57 Missense_Mutation p.P366L 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 39414809 39414809 C T CDKL4 Missense_Mutation p.G232R 0.14 tolerated(0.08) benign(0) TCGA-FR-A726-01 2 40366709 40366709 G A SLC8A1 Missense_Mutation p.P793S 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 40655980 40655980 C T SLC8A1 Missense_Mutation p.D481N 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 40656722 40656722 C T SLC8A1 Nonsense_Mutation p.W233* 0.38 TCGA-FR-A726-01 2 42284440 42284440 C T PKDCC Silent p.L434L 0.30 TCGA-FR-A726-01 2 42995055 42995055 C T HAAO Missense_Mutation p.G215E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 42996982 42996982 C T HAAO Silent p.E167E 0.25 TCGA-FR-A726-01 2 43798859 43798859 G A THADA Missense_Mutation p.S684F 0.33 deleterious(0) probably_damaging(0.94) TCGA-FR-A726-01 2 43969971 43969971 G A PLEKHH2 Missense_Mutation p.E1105K 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 44051154 44051154 G A ABCG5 Nonsense_Mutation p.R408* 0.25 TCGA-FR-A726-01 2 44145397 44145397 C A LRPPRC Nonsense_Mutation p.E1013* 0.23 TCGA-FR-A726-01 2 44508607 44508607 G A SLC3A1 Missense_Mutation p.G231E 0.33 tolerated(0.34) benign(0.062) TCGA-FR-A726-01 2 45578 45578 C T FAM110C Missense_Mutation p.G270R 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 45807058 45807058 G A SRBD1 Missense_Mutation p.P343L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 2 45832545 45832545 G A SRBD1 Silent p.V12V 0.34 TCGA-FR-A726-01 2 46739262 46739262 C T ATP6V1E2 Missense_Mutation p.E197K 0.33 deleterious(0.01) benign(0.248) TCGA-FR-A726-01 2 46985978 46985978 C T SOCS5 Silent p.T103T 0.27 TCGA-FR-A726-01 2 47202165 47202165 G A TTC7A Missense_Mutation p.E191K 0.36 deleterious(0.01) probably_damaging(0.916) TCGA-FR-A726-01 2 47205970 47205970 C T TTC7A Missense_Mutation p.H230Y 0.31 deleterious(0.05) benign(0.024) TCGA-FR-A726-01 2 47233819 47233819 C T TTC7A Missense_Mutation p.H415Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 48573786 48573786 C T FOXN2 Missense_Mutation p.H145Y 0.36 deleterious(0.01) benign(0.244) TCGA-FR-A726-01 2 48807953 48807953 C T STON1-GTF2A1L Missense_Mutation p.P61S 0.32 tolerated(0.16) probably_damaging(0.998) TCGA-FR-A726-01 2 48809567 48809567 C A STON1-GTF2A1L Missense_Mutation p.R599S 0.08 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 48906516 48906516 G A STON1-GTF2A1L Missense_Mutation p.G1162S 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 48914753 48914753 C T LHCGR 3'UTR 0.48 TCGA-FR-A726-01 2 48914754 48914754 C T LHCGR 3'UTR 0.48 TCGA-FR-A726-01 2 48952829 48952829 G A LHCGR Silent p.P123P 0.40 TCGA-FR-A726-01 2 49189957 49189957 C T FSHR Missense_Mutation p.R668K 0.26 tolerated(1) benign(0.001) TCGA-FR-A726-01 2 49190175 49190175 G A FSHR Silent p.A595A 0.29 TCGA-FR-A726-01 2 50149102 50149102 C T NRXN1 Missense_Mutation p.D1542N 0.25 deleterious_low_confidence(0.04) benign(0.099) TCGA-FR-A726-01 2 50280594 50280594 C T NRXN1 Missense_Mutation p.D1355N 0.24 tolerated(0.28) benign(0.078) TCGA-FR-A726-01 2 50282133 50282133 A G NRXN1 Silent p.Y1296Y 0.35 TCGA-FR-A726-01 2 50464068 50464068 G A NRXN1 Silent p.I1175I 0.40 TCGA-FR-A726-01 2 54040108 54040108 C T ERLEC1 Missense_Mutation p.S375F 0.31 deleterious(0.05) possibly_damaging(0.752) TCGA-FR-A726-01 2 54101586 54101586 A T PSME4 Missense_Mutation p.Y1664N 0.10 deleterious(0) possibly_damaging(0.781) TCGA-FR-A726-01 2 54135958 54135958 G A PSME4 Silent p.H864H 0.27 TCGA-FR-A726-01 2 54481917 54481917 G A TSPYL6 3'UTR 0.44 TCGA-FR-A726-01 2 54586099 54586099 C T C2orf73 Missense_Mutation p.P131L 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-FR-A726-01 2 54856264 54856264 G A SPTBN1 Missense_Mutation p.D665N 0.30 deleterious(0.03) possibly_damaging(0.499) TCGA-FR-A726-01 2 54887099 54887099 C T SPTBN1 Missense_Mutation p.S2128F 0.40 deleterious(0.04) possibly_damaging(0.62) TCGA-FR-A726-01 2 54887252 54887252 C T SPTBN1 Intron 0.44 TCGA-FR-A726-01 2 60679641 60679641 G A BCL11A 3'Flank 0.26 TCGA-FR-A726-01 2 60688010 60688010 G A BCL11A Silent p.S679S 0.30 TCGA-FR-A726-01 2 61019382 61019382 C T PAPOLG Missense_Mutation p.P546L 0.28 deleterious(0.03) benign(0.066) TCGA-FR-A726-01 2 61297561 61297561 C T KIAA1841 Missense_Mutation p.P26S 0.35 tolerated(1) benign(0.001) TCGA-FR-A726-01 2 61475717 61475717 G A USP34 Missense_Mutation p.S2108F 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 61566548 61566548 A G USP34 Silent p.F894F 0.36 TCGA-FR-A726-01 2 62449741 62449741 C T B3GNT2 Missense_Mutation p.S129L 0.07 deleterious(0) benign(0.269) TCGA-FR-A726-01 2 63175885 63175885 G A EHBP1 Missense_Mutation p.G670E 0.31 deleterious_low_confidence(0) benign(0.342) TCGA-FR-A726-01 2 63283012 63283012 C T OTX1 Missense_Mutation p.S209F 0.31 tolerated(0.12) unknown(0) TCGA-FR-A726-01 2 68521038 68521038 C T CNRIP1 Missense_Mutation p.E151K 0.12 deleterious(0) possibly_damaging(0.871) TCGA-FR-A726-01 2 68620305 68620305 G A PLEK Silent p.R258R 0.26 TCGA-FR-A726-01 2 68882504 68882504 C T PROKR1 Silent p.I326I 0.33 TCGA-FR-A726-01 2 68882552 68882552 C T PROKR1 Silent p.F342F 0.27 TCGA-FR-A726-01 2 69046429 69046429 G A ARHGAP25 Missense_Mutation p.R393K 0.17 tolerated(0.46) benign(0.008) TCGA-FR-A726-01 2 69092612 69092612 G A BMP10 3'Flank 0.31 TCGA-FR-A726-01 2 69098399 69098399 G A BMP10 Missense_Mutation p.P31L 0.28 tolerated(0.21) benign(0.002) TCGA-FR-A726-01 2 69098437 69098437 C T BMP10 Silent p.L18L 0.35 TCGA-FR-A726-01 2 69172563 69172563 G A GKN2 Silent p.G164G 0.26 TCGA-FR-A726-01 2 69409784 69409784 C T ANTXR1 Missense_Mutation p.P449S 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 70188518 70188518 G A ASPRV1 Silent p.F101F 0.30 TCGA-FR-A726-01 2 70314922 70314922 T C PCBP1 Missense_Mutation p.I16T 0.32 deleterious(0.02) possibly_damaging(0.877) TCGA-FR-A726-01 2 70890601 70890602 - C ADD2 Frame_Shift_Ins p.S713Vfs*44 0.24 TCGA-FR-A726-01 2 70903850 70903850 C T ADD2 Intron 0.61 TCGA-FR-A726-01 2 70903932 70903932 C T ADD2 Missense_Mutation p.S530N 0.36 tolerated(0.46) benign(0.147) TCGA-FR-A726-01 2 70915182 70915182 G A ADD2 Missense_Mutation p.H308Y 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A726-01 2 70933485 70933485 G A ADD2 Missense_Mutation p.P19L 0.35 deleterious(0.02) benign(0.007) TCGA-FR-A726-01 2 70933544 70933544 C T ADD2 5'UTR 0.34 TCGA-FR-A726-01 2 71043972 71043972 G A CLEC4F Nonsense_Mutation p.Q181* 0.31 TCGA-FR-A726-01 2 71148277 71148277 G A VAX2 Silent p.L99L 0.49 TCGA-FR-A726-01 2 71170819 71170819 C T ATP6V1B1 Silent p.P50P 0.28 TCGA-FR-A726-01 2 71576391 71576391 C T ZNF638 Missense_Mutation p.R103W 0.20 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 2 71780302 71780302 C T DYSF Silent p.S656S 0.33 TCGA-FR-A726-01 2 71871139 71871139 A G DYSF Missense_Mutation p.I1524M 0.32 tolerated(0.08) possibly_damaging(0.495) TCGA-FR-A726-01 2 71871148 71871148 G A DYSF Silent p.R1527R 0.39 TCGA-FR-A726-01 2 71886031 71886031 C T DYSF Silent p.L1593L 0.33 TCGA-FR-A726-01 2 72359480 72359480 G A CYP26B1 Missense_Mutation p.P472L 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 73198711 73198711 G A SFXN5 Silent p.I243I 0.39 TCGA-FR-A726-01 2 73315281 73315281 G A RAB11FIP5 Missense_Mutation p.P489S 0.26 tolerated(0.12) benign(0.39) TCGA-FR-A726-01 2 73316309 73316309 G A RAB11FIP5 Missense_Mutation p.P189L 0.32 deleterious(0.01) possibly_damaging(0.776) TCGA-FR-A726-01 2 73453093 73453093 G A SMYD5 3'UTR 0.34 TCGA-FR-A726-01 2 73676407 73676407 C T ALMS1 Missense_Mutation p.S917F 0.29 benign(0.255) TCGA-FR-A726-01 2 73786199 73786199 C T ALMS1 Silent p.I3437I 0.37 TCGA-FR-A726-01 2 73826614 73826614 G A ALMS1 Silent p.Q3877Q 0.33 TCGA-FR-A726-01 2 74043659 74043659 C T C2orf78 Missense_Mutation p.P770L 0.40 tolerated(0.12) benign(0.05) TCGA-FR-A726-01 2 74044043 74044043 C T C2orf78 Missense_Mutation p.S898F 0.21 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 2 74274272 74274272 C T TET3 Missense_Mutation p.P275S 0.40 tolerated(0.14) benign(0.006) TCGA-FR-A726-01 2 74274421 74274421 C T TET3 Silent p.P324P 0.08 TCGA-FR-A726-01 2 74274534 74274534 C T TET3 Missense_Mutation p.S362F 0.26 deleterious(0.03) benign(0.248) TCGA-FR-A726-01 2 74274540 74274540 C T TET3 Missense_Mutation p.P364L 0.35 tolerated(0.14) benign(0.002) TCGA-FR-A726-01 2 74589185 74589185 G A DCTN1 Silent p.F1231F 0.18 TCGA-FR-A726-01 2 74596228 74596228 G C DCTN1 Silent p.A566A 0.29 TCGA-FR-A726-01 2 74710205 74710205 C T CCDC142 5'Flank 0.38 TCGA-FR-A726-01 2 74720205 74720205 C T TTC31 Missense_Mutation p.P474S 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.834) TCGA-FR-A726-01 2 74725130 74725130 G A LBX2 Missense_Mutation p.P170L 0.41 tolerated_low_confidence(0.08) benign(0.041) TCGA-FR-A726-01 2 74783701 74783701 C T DOK1 Silent p.S302S 0.22 TCGA-FR-A726-01 2 74803670 74803670 C T M1AP Missense_Mutation p.R282K 0.34 tolerated(0.45) benign(0.212) TCGA-FR-A726-01 2 74803672 74803672 C T M1AP Silent p.L281L 0.33 TCGA-FR-A726-01 2 74803713 74803713 G A M1AP Missense_Mutation p.L268F 0.32 deleterious(0) probably_damaging(0.957) TCGA-FR-A726-01 2 74867441 74867441 G A M1AP 5'UTR 0.28 TCGA-FR-A726-01 2 77746788 77746788 C T LRRTM4 Silent p.R69R 0.27 TCGA-FR-A726-01 2 79348777 79348777 G A REG1A Missense_Mutation p.E52K 0.38 tolerated(0.81) benign(0.251) TCGA-FR-A726-01 2 79350434 79350434 G A REG1A 3'UTR 0.19 TCGA-FR-A726-01 2 79363936 79363936 C T REG1P RNA 0.28 TCGA-FR-A726-01 2 79384281 79384281 G A REG3A 3'UTR 0.27 TCGA-FR-A726-01 2 79971636 79971636 G A CTNNA2 Missense_Mutation p.E76K 0.31 deleterious(0.05) benign(0.209) TCGA-FR-A726-01 2 84518540 84518540 C T FUNDC2P2 RNA 0.25 TCGA-FR-A726-01 2 84800672 84800672 G A DNAH6 Missense_Mutation p.E629K 0.34 tolerated(0.49) benign(0.05) TCGA-FR-A726-01 2 85066366 85066366 G A TRABD2A Silent p.L251L 0.39 TCGA-FR-A726-01 2 85273245 85273245 C T KCMF1 Nonsense_Mutation p.R149* 0.31 TCGA-FR-A726-01 2 85770808 85770808 G A MAT2A Silent p.K367K 0.16 TCGA-FR-A726-01 2 85850757 85850757 C T USP39 Intron 0.30 TCGA-FR-A726-01 2 86308771 86308771 G A POLR1A Silent p.F292F 0.43 TCGA-FR-A726-01 2 86406652 86406652 G A IMMT Silent p.F71F 0.34 TCGA-FR-A726-01 2 86678263 86678263 C T KDM3A Missense_Mutation p.S127F 0.29 deleterious(0) possibly_damaging(0.486) TCGA-FR-A726-01 2 87085363 87085363 C T CD8B Missense_Mutation p.D74N 0.34 tolerated(0.44) benign(0.122) TCGA-FR-A726-01 2 87201216 87201216 G A RGPD1 Missense_Mutation p.G424S 0.15 deleterious(0.01) possibly_damaging(0.693) TCGA-FR-A726-01 2 88082524 88082524 G A RGPD2 Missense_Mutation p.S1340F 0.32 deleterious(0.01) possibly_damaging(0.683) TCGA-FR-A726-01 2 88422647 88422647 G A FABP1 Intron 0.35 TCGA-FR-A726-01 2 88829024 88829024 C T TEX37 3'UTR 0.39 TCGA-FR-A726-01 2 8888036 8888036 C T KIDINS220 Missense_Mutation p.R1170K 0.35 tolerated(0.34) unknown(0) TCGA-FR-A726-01 2 89117923 89117923 C T AC096579.13 RNA 0.39 TCGA-FR-A726-01 2 8919183 8919183 G A KIDINS220 Silent p.L819L 0.32 TCGA-FR-A726-01 2 8926128 8926128 G A KIDINS220 Missense_Mutation p.P658S 0.30 deleterious(0) possibly_damaging(0.864) TCGA-FR-A726-01 2 89265910 89265910 G A IGKV1-6 Silent p.S74S 0.30 TCGA-FR-A726-01 2 89292091 89292091 C T IGKV1-8 Missense_Mutation p.G61E 0.36 deleterious(0.01) possibly_damaging(0.797) TCGA-FR-A726-01 2 89309623 89309623 C T IGKV1-9 Silent p.L69L 0.31 TCGA-FR-A726-01 2 89339837 89339837 C T IGKV1-12 Missense_Mutation p.G79R 0.19 deleterious(0.01) possibly_damaging(0.886) TCGA-FR-A726-01 2 89399429 89399429 C T IGKV1-16 Missense_Mutation p.D92N 0.29 deleterious(0.01) benign(0.113) TCGA-FR-A726-01 2 89399808 89399808 G A IGKV1-16 Missense_Mutation p.A7V 0.31 tolerated(0.09) benign(0.026) TCGA-FR-A726-01 2 89417092 89417092 G A IGKV1-17 Missense_Mutation p.S31F 0.33 deleterious(0.01) possibly_damaging(0.498) TCGA-FR-A726-01 2 89459263 89459263 T A IGKV6-21 Missense_Mutation p.Y105F 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 2 89513332 89513332 G A IGKV1-27 Silent p.L17L 0.22 TCGA-FR-A726-01 2 90077798 90077798 C T IGKV3D-20 Missense_Mutation p.L8F 0.37 tolerated(0.18) benign(0.13) TCGA-FR-A726-01 2 90139124 90139124 C T IGKV1D-16 Missense_Mutation p.A7V 0.10 tolerated(0.09) benign(0.029) TCGA-FR-A726-01 2 90193262 90193262 G A IGKV1D-13 Silent p.G63G 0.30 TCGA-FR-A726-01 2 90211999 90211999 C T IGKV3D-11 Silent p.L31L 0.20 TCGA-FR-A726-01 2 90229490 90229490 G A IGKV1D-42 Missense_Mutation p.D104N 0.30 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 2 95847590 95847590 C T ZNF2 Silent p.D339D 0.28 TCGA-FR-A726-01 2 96078287 96078287 C T FAHD2A Missense_Mutation p.S264F 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 2 96260179 96260179 C T TRIM43 Silent p.H136H 0.11 TCGA-FR-A726-01 2 96581736 96581736 G A ANKRD36C Missense_Mutation p.S814F 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.496) TCGA-FR-A726-01 2 96692043 96692043 G A GPAT2 Missense_Mutation p.P348L 0.26 deleterious(0) unknown(0) TCGA-FR-A726-01 2 96809537 96809537 G A DUSP2 3'UTR 0.36 TCGA-FR-A726-01 2 96919467 96919467 G A TMEM127 3'UTR 0.29 TCGA-FR-A726-01 2 96963116 96963116 G A SNRNP200 Silent p.P454P 0.25 TCGA-FR-A726-01 2 96992897 96992897 C T ITPRIPL1 Silent p.V184V 0.37 TCGA-FR-A726-01 2 97276591 97276591 C T KANSL3 Silent p.K397K 0.36 TCGA-FR-A726-01 2 97363441 97363441 G A FER1L5 RNA 0.28 TCGA-FR-A726-01 2 97370421 97370421 G A LMAN2L 3'Flank 0.23 TCGA-FR-A726-01 2 97370422 97370422 G A LMAN2L 3'Flank 0.23 TCGA-FR-A726-01 2 97427503 97427503 C T CNNM4 Missense_Mutation p.S256F 0.21 deleterious(0.02) probably_damaging(0.961) TCGA-FR-A726-01 2 97427504 97427504 C T CNNM4 Silent p.S256S 0.21 TCGA-FR-A726-01 2 97527356 97527356 C T SEMA4C Silent p.S544S 0.37 TCGA-FR-A726-01 2 97751879 97751879 G A FAHD2B Silent p.I173I 0.33 TCGA-FR-A726-01 2 98409002 98409002 G A TMEM131 Missense_Mutation p.H1331Y 0.30 tolerated_low_confidence(0.43) benign(0.176) TCGA-FR-A726-01 2 98735991 98735991 G A VWA3B Missense_Mutation p.E103K 0.10 deleterious(0.01) benign(0.111) TCGA-FR-A726-01 2 98737774 98737774 G A VWA3B Silent p.E185E 0.34 TCGA-FR-A726-01 2 98779410 98779410 C T VWA3B Missense_Mutation p.P362L 0.08 tolerated(0.06) benign(0.005) TCGA-FR-A726-01 2 98779411 98779411 C T VWA3B Silent p.P362P 0.08 TCGA-FR-A726-01 2 98914486 98914486 C T VWA3B Silent p.L1092L 0.36 TCGA-FR-A726-01 2 98916620 98916620 C T VWA3B Missense_Mutation p.P1121S 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 2 98928496 98928496 G A VWA3B Splice_Site p.X1245_splice 0.32 TCGA-FR-A726-01 2 98996811 98996811 G A CNGA3 Missense_Mutation p.G130E 0.16 tolerated(0.55) benign(0.005) TCGA-FR-A726-01 2 98996812 98996812 G A CNGA3 Silent p.G130G 0.18 TCGA-FR-A726-01 2 99013247 99013247 C T CNGA3 Silent p.F538F 0.33 TCGA-FR-A726-01 2 99812067 99812067 C T MRPL30 Missense_Mutation p.P129S 0.33 deleterious(0.04) possibly_damaging(0.885) TCGA-FR-A726-01 2 99861917 99861917 G A LYG2 Silent p.I63I 0.37 TCGA-FR-A726-01 2 99900746 99900746 G A LYG1 3'UTR 0.28 TCGA-FR-A726-01 3 10011406 10011406 G A EMC3 Silent p.F218F 0.36 TCGA-FR-A726-01 3 100170748 100170748 C T LNP1 Silent p.S114S 0.35 TCGA-FR-A726-01 3 100287720 100287720 C T TMEM45A Missense_Mutation p.H215Y 0.33 deleterious(0.02) benign(0.119) TCGA-FR-A726-01 3 100354671 100354671 G A GPR128 Splice_Site p.X199_splice 0.32 TCGA-FR-A726-01 3 100364865 100364865 G A GPR128 Silent p.S341S 0.31 TCGA-FR-A726-01 3 100364866 100364866 G A GPR128 Missense_Mutation p.D342N 0.30 tolerated(1) benign(0.001) TCGA-FR-A726-01 3 100527037 100527037 G A ABI3BP Missense_Mutation p.S547L 0.34 deleterious(0.02) benign(0.011) TCGA-FR-A726-01 3 10089620 10089620 C T FANCD2 Missense_Mutation p.S433L 0.16 tolerated(0.05) benign(0.008) TCGA-FR-A726-01 3 100948315 100948315 G A IMPG2 Missense_Mutation p.P1181L 0.27 deleterious(0) benign(0.066) TCGA-FR-A726-01 3 100976537 100976537 G A IMPG2 Missense_Mutation p.S330F 0.36 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 10106450 10106450 G A FANCD2 Missense_Mutation p.E687K 0.06 deleterious(0.01) possibly_damaging(0.885) TCGA-FR-A726-01 3 101136606 101136606 G A SENP7 Silent p.L105L 0.09 TCGA-FR-A726-01 3 101283793 101283793 C T TRMT10C Silent p.P56P 0.18 TCGA-FR-A726-01 3 101283794 101283794 C T TRMT10C Missense_Mutation p.P57S 0.18 tolerated(0.15) benign(0.01) TCGA-FR-A726-01 3 101572436 101572436 C T NFKBIZ Missense_Mutation p.P356S 0.31 deleterious_low_confidence(0.03) benign(0.161) TCGA-FR-A726-01 3 10242081 10242081 C T IRAK2 Silent p.P102P 0.08 TCGA-FR-A726-01 3 10401714 10401714 C T ATP2B2 Missense_Mutation p.E585K 0.25 deleterious(0.04) benign(0.22) TCGA-FR-A726-01 3 10417157 10417157 C T ATP2B2 Missense_Mutation p.G458E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 10429999 10429999 C T ATP2B2 Missense_Mutation p.G290E 0.30 deleterious(0.01) probably_damaging(0.975) TCGA-FR-A726-01 3 10452398 10452398 C T ATP2B2 Missense_Mutation p.E101K 0.25 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 3 105377847 105377847 G A CBLB Silent p.F972F 0.26 TCGA-FR-A726-01 3 105456070 105456070 G A CBLB Missense_Mutation p.P339L 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 105456071 105456071 G T CBLB Missense_Mutation p.P339T 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 107096387 107096387 C T CCDC54 5'UTR 0.43 TCGA-FR-A726-01 3 107492087 107492087 C T BBX Missense_Mutation p.P507S 0.38 tolerated(0.15) probably_damaging(0.998) TCGA-FR-A726-01 3 107520032 107520032 G A BBX Missense_Mutation p.G881E 0.36 tolerated(1) benign(0) TCGA-FR-A726-01 3 108129494 108129494 C T MYH15 Silent p.K1497K 0.32 TCGA-FR-A726-01 3 108158742 108158742 C T MYH15 Missense_Mutation p.E993K 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 3 108160017 108160017 C T MYH15 Missense_Mutation p.E936K 0.41 deleterious(0.03) benign(0.002) TCGA-FR-A726-01 3 108160018 108160018 C T MYH15 Silent p.S935S 0.40 TCGA-FR-A726-01 3 108179190 108179190 C T MYH15 Missense_Mutation p.R650Q 0.22 tolerated(0.16) benign(0.013) TCGA-FR-A726-01 3 108219037 108219037 C T MYH15 Missense_Mutation p.G162R 0.37 deleterious(0.03) benign(0.08) TCGA-FR-A726-01 3 108220676 108220676 G A MYH15 Silent p.I94I 0.27 TCGA-FR-A726-01 3 108476000 108476000 T C RETNLB Silent p.L11L 0.32 TCGA-FR-A726-01 3 10861459 10861459 G A SLC6A11 Missense_Mutation p.A152T 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 3 108672567 108672567 G A GUCA1C Missense_Mutation p.P15S 0.34 tolerated(0.83) benign(0.002) TCGA-FR-A726-01 3 108682324 108682324 G A MORC1 Silent p.I912I 0.30 TCGA-FR-A726-01 3 108690227 108690227 G A MORC1 Missense_Mutation p.P834S 0.34 deleterious(0.01) benign(0.098) TCGA-FR-A726-01 3 108698393 108698393 C T MORC1 Missense_Mutation p.E816K 0.30 tolerated(0.14) benign(0.098) TCGA-FR-A726-01 3 108788544 108788544 C T MORC1 Missense_Mutation p.M250I 0.34 deleterious(0) possibly_damaging(0.645) TCGA-FR-A726-01 3 108819266 108819266 T C MORC1 Silent p.K104K 0.29 TCGA-FR-A726-01 3 10885954 10885954 G A SLC6A11 Missense_Mutation p.E227K 0.34 tolerated(0.06) possibly_damaging(0.559) TCGA-FR-A726-01 3 109028056 109028056 C T DPPA2 Silent p.R101R 0.35 TCGA-FR-A726-01 3 109049659 109049659 C T DPPA4 Missense_Mutation p.D131N 0.33 tolerated(1) benign(0.004) TCGA-FR-A726-01 3 10967745 10967745 C T SLC6A11 Silent p.S392S 0.24 TCGA-FR-A726-01 3 10976883 10976883 G A SLC6A11 Missense_Mutation p.E582K 0.22 tolerated(0.19) benign(0.183) TCGA-FR-A726-01 3 11059056 11059056 C T SLC6A1 Silent p.F53F 0.28 TCGA-FR-A726-01 3 11067215 11067215 G A SLC6A1 Silent p.K265K 0.38 TCGA-FR-A726-01 3 11078599 11078599 G A SLC6A1 Missense_Mutation p.G583S 0.31 tolerated(0.26) benign(0.04) TCGA-FR-A726-01 3 111304183 111304183 C T CD96 Silent p.I271I 0.21 TCGA-FR-A726-01 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.40 deleterious(0) benign(0.02) TCGA-FR-A726-01 3 111426882 111426882 G A PLCXD2 Missense_Mutation p.M91I 0.35 tolerated(0.32) possibly_damaging(0.654) TCGA-FR-A726-01 3 111564677 111564677 G A PLCXD2 3'UTR 0.35 TCGA-FR-A726-01 3 111603874 111603874 C T PHLDB2 Missense_Mutation p.S317F 0.40 tolerated(0.1) benign(0.013) TCGA-FR-A726-01 3 111769588 111769588 G A TMPRSS7 Silent p.P261P 0.33 TCGA-FR-A726-01 3 111793181 111793181 G A TMPRSS7 Missense_Mutation p.D443N 0.31 tolerated(0.59) benign(0.004) TCGA-FR-A726-01 3 111870712 111870712 C T SLC9C1 Silent p.R1172R 0.32 TCGA-FR-A726-01 3 111940000 111940000 C T SLC9C1 Missense_Mutation p.E549K 0.34 tolerated(0.55) benign(0.001) TCGA-FR-A726-01 3 112545918 112545918 C T CD200R1L Missense_Mutation p.E201K 0.38 tolerated(0.06) benign(0.026) TCGA-FR-A726-01 3 112642578 112642578 C T CD200R1 Silent p.V331V 0.26 TCGA-FR-A726-01 3 112648265 112648265 C T CD200R1 Missense_Mutation p.E98K 0.28 tolerated(0.47) probably_damaging(0.994) TCGA-FR-A726-01 3 11301600 11301600 G A HRH1 Missense_Mutation p.D293N 0.34 tolerated(0.09) benign(0.109) TCGA-FR-A726-01 3 11301749 11301749 G A HRH1 Silent p.G342G 0.25 TCGA-FR-A726-01 3 11301750 11301750 G A HRH1 Missense_Mutation p.A343T 0.23 tolerated(0.58) benign(0.079) TCGA-FR-A726-01 3 11301936 11301936 T C HRH1 Silent p.L405L 0.32 TCGA-FR-A726-01 3 113092365 113092365 G A WDR52 Silent p.F779F 0.37 TCGA-FR-A726-01 3 113850015 113850015 C T DRD3 Missense_Mutation p.G319E 0.33 tolerated(1) benign(0.088) TCGA-FR-A726-01 3 114069800 114069800 G A ZBTB20 Silent p.F375F 0.25 TCGA-FR-A726-01 3 115395319 115395319 G A GAP43 Missense_Mutation p.E200K 0.29 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 3 118870112 118870112 C T C3orf30 Silent p.P528P 0.31 TCGA-FR-A726-01 3 118906646 118906646 G A UPK1B Missense_Mutation p.E32K 0.34 deleterious(0.01) probably_damaging(0.974) TCGA-FR-A726-01 3 118945866 118945866 G A B4GALT4 Silent p.F92F 0.13 TCGA-FR-A726-01 3 119101170 119101170 C T ARHGAP31 Missense_Mutation p.H155Y 0.34 tolerated(0.08) possibly_damaging(0.885) TCGA-FR-A726-01 3 119209528 119209528 C T POGLUT1 Missense_Mutation p.H310Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 3 119246610 119246610 G A CD80 3'UTR 0.26 TCGA-FR-A726-01 3 119962979 119962979 C T GPR156 5'UTR 0.33 TCGA-FR-A726-01 3 120320153 120320153 C T NDUFB4 Intron 0.33 TCGA-FR-A726-01 3 120352110 120352110 G A HGD Silent p.L358L 0.37 TCGA-FR-A726-01 3 120394663 120394663 G A HGD Silent p.C21C 0.33 TCGA-FR-A726-01 3 120417281 120417281 C T RABL3 Missense_Mutation p.E175K 0.26 tolerated(0.05) possibly_damaging(0.795) TCGA-FR-A726-01 3 120461371 120461371 C T RABL3 5'UTR 0.29 TCGA-FR-A726-01 3 120500323 120500323 C T GTF2E1 3'UTR 0.31 TCGA-FR-A726-01 3 120500324 120500324 C T GTF2E1 3'UTR 0.30 TCGA-FR-A726-01 3 120673832 120673832 G A STXBP5L Missense_Mutation p.D79N 0.33 deleterious(0) benign(0.184) TCGA-FR-A726-01 3 120959305 120959305 G A STXBP5L Missense_Mutation p.G451R 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 120973898 120973898 G A STXBP5L Missense_Mutation p.G533E 0.24 deleterious(0) probably_damaging(0.961) TCGA-FR-A726-01 3 121340633 121340633 C T FBXO40 Silent p.T119T 0.27 TCGA-FR-A726-01 3 121341701 121341701 C T FBXO40 Silent p.F475F 0.31 TCGA-FR-A726-01 3 121341707 121341707 C T FBXO40 Silent p.F477F 0.35 TCGA-FR-A726-01 3 121361780 121361780 G A HCLS1 Nonsense_Mutation p.Q150* 0.32 TCGA-FR-A726-01 3 121641895 121641895 C T SLC15A2 Silent p.L292L 0.07 TCGA-FR-A726-01 3 121642080 121642080 G A SLC15A2 Nonsense_Mutation p.W323* 0.39 TCGA-FR-A726-01 3 121647961 121647961 C T SLC15A2 Missense_Mutation p.R492C 0.33 tolerated(0.17) benign(0.009) TCGA-FR-A726-01 3 121659335 121659335 G A SLC15A2 Silent p.Q671Q 0.31 TCGA-FR-A726-01 3 121712238 121712238 C T ILDR1 Missense_Mutation p.R453Q 0.20 tolerated(0.07) benign(0.001) TCGA-FR-A726-01 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.39 tolerated(0.24) benign(0.003) TCGA-FR-A726-01 3 121740962 121740962 C T ILDR1 5'UTR 0.31 TCGA-FR-A726-01 3 121838498 121838498 G A CD86 3'UTR 0.36 TCGA-FR-A726-01 3 122003021 122003021 G A CASR Silent p.V750V 0.34 TCGA-FR-A726-01 3 12224844 12224844 G A SYN2 RNA 0.48 TCGA-FR-A726-01 3 122474256 122474256 G A HSPBAP1 Missense_Mutation p.P198S 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 122591357 122591357 C T DIRC2 Missense_Mutation p.P412S 0.31 deleterious(0.03) benign(0.237) TCGA-FR-A726-01 3 122928132 122928132 A G SEC22A Missense_Mutation p.D23G 0.38 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 3 122928133 122928133 T A SEC22A Missense_Mutation p.D23E 0.36 deleterious(0) probably_damaging(0.922) TCGA-FR-A726-01 3 123033100 123033100 C T ADCY5 Silent p.V808V 0.27 TCGA-FR-A726-01 3 123066664 123066664 G A ADCY5 Silent p.F457F 0.31 TCGA-FR-A726-01 3 123418879 123418879 G A MYLK Missense_Mutation p.L1146F 0.28 deleterious(0) possibly_damaging(0.695) TCGA-FR-A726-01 3 123419169 123419169 G A MYLK Missense_Mutation p.P1049L 0.29 deleterious(0.01) benign(0.003) TCGA-FR-A726-01 3 123452762 123452762 G A MYLK Silent p.L361L 0.32 TCGA-FR-A726-01 3 123471232 123471232 C T MYLK Missense_Mutation p.E107K 0.30 tolerated(0.61) benign(0.156) TCGA-FR-A726-01 3 124048821 124048821 G A KALRN Silent p.V464V 0.33 TCGA-FR-A726-01 3 124149510 124149510 G A KALRN Missense_Mutation p.G904E 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-FR-A726-01 3 124153173 124153173 C T KALRN Missense_Mutation p.S948F 0.28 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-FR-A726-01 3 124165637 124165637 G A KALRN Missense_Mutation p.E1151K 0.32 deleterious(0) possibly_damaging(0.617) TCGA-FR-A726-01 3 12421209 12421209 C T PPARG Missense_Mutation p.T30I 0.34 deleterious_low_confidence(0.03) benign(0) TCGA-FR-A726-01 3 124351323 124351323 C T KALRN Silent p.L48L 0.21 TCGA-FR-A726-01 3 124351353 124351353 C T KALRN Missense_Mutation p.H58Y 0.34 deleterious(0.01) benign(0.251) TCGA-FR-A726-01 3 124438403 124438403 C T RP11-71H17.7 5'Flank 0.20 TCGA-FR-A726-01 3 124482464 124482464 G A ITGB5 3'UTR 0.23 TCGA-FR-A726-01 3 124578286 124578286 C T ITGB5 Missense_Mutation p.G55E 0.32 deleterious(0.04) probably_damaging(0.965) TCGA-FR-A726-01 3 12458310 12458310 C T PPARG Silent p.I309I 0.40 TCGA-FR-A726-01 3 12458480 12458480 G A PPARG Missense_Mutation p.G366E 0.13 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 3 124627180 124627180 C T MUC13 Silent p.T450T 0.36 TCGA-FR-A726-01 3 124728665 124728665 A C HEG1 Missense_Mutation p.V1026G 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 124731705 124731705 C T HEG1 Silent p.V906V 0.39 TCGA-FR-A726-01 3 124738371 124738371 A T HEG1 Silent p.T441T 0.05 TCGA-FR-A726-01 3 124807163 124807163 G A SLC12A8 Missense_Mutation p.P658L 0.32 tolerated(0.32) benign(0.043) TCGA-FR-A726-01 3 124837670 124837670 G A SLC12A8 Silent p.L285L 0.24 TCGA-FR-A726-01 3 125879800 125879800 T A ALDH1L1 Missense_Mutation p.Q18L 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FR-A726-01 3 126160731 126160731 G A ZXDC Silent p.F757F 0.37 TCGA-FR-A726-01 3 126180846 126180846 G A ZXDC Silent p.L553L 0.36 TCGA-FR-A726-01 3 126208160 126208160 C T UROC1 Missense_Mutation p.R616K 0.28 deleterious(0) probably_damaging(0.933) TCGA-FR-A726-01 3 126211285 126211285 C T UROC1 Silent p.Q588Q 0.40 TCGA-FR-A726-01 3 126386101 126386101 T A NUP210P1 RNA 0.21 TCGA-FR-A726-01 3 126451940 126451940 G A CHCHD6 Missense_Mutation p.A96T 0.40 tolerated(0.55) benign(0.012) TCGA-FR-A726-01 3 126915866 126915866 C T C3orf56 Missense_Mutation p.P113L 0.29 tolerated(0.08) possibly_damaging(0.851) TCGA-FR-A726-01 3 126915867 126915867 C T C3orf56 Silent p.P113P 0.29 TCGA-FR-A726-01 3 1269577 1269577 C T CNTN6 Silent p.I86I 0.29 TCGA-FR-A726-01 3 127292608 127292608 G A TPRA1 Missense_Mutation p.S293F 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 127295531 127295531 C T TPRA1 Missense_Mutation p.E143K 0.24 deleterious(0.01) probably_damaging(0.935) TCGA-FR-A726-01 3 127642834 127642834 C T KBTBD12 Silent p.F310F 0.33 TCGA-FR-A726-01 3 128205000 128205000 C T GATA2 Silent p.G147G 0.27 TCGA-FR-A726-01 3 128345650 128345650 C T RPN1 Silent p.R354R 0.25 TCGA-FR-A726-01 3 128345651 128345651 C T RPN1 Missense_Mutation p.R354K 0.25 deleterious(0.04) possibly_damaging(0.759) TCGA-FR-A726-01 3 12838188 12838188 C T CAND2 5'UTR 0.22 TCGA-FR-A726-01 3 128603514 128603514 C T ACAD9 Missense_Mutation p.P57S 0.42 deleterious(0) probably_damaging(0.928) TCGA-FR-A726-01 3 12867044 12867044 T A CAND2 Missense_Mutation p.V1039E 0.20 deleterious(0) possibly_damaging(0.638) TCGA-FR-A726-01 3 129121422 129121422 C T EFCAB12 Silent p.K468K 0.23 TCGA-FR-A726-01 3 129140327 129140327 C T EFCAB12 Silent p.K123K 0.38 TCGA-FR-A726-01 3 129210989 129210989 C T IFT122 Silent p.F717F 0.24 TCGA-FR-A726-01 3 129221566 129221566 C T IFT122 Silent p.I847I 0.06 TCGA-FR-A726-01 3 129234359 129234359 C T IFT122 Missense_Mutation p.S1112F 0.39 deleterious(0.02) probably_damaging(0.965) TCGA-FR-A726-01 3 129249750 129249750 G A RHO Silent p.L131L 0.32 TCGA-FR-A726-01 3 129292561 129292561 C T PLXND1 Missense_Mutation p.G905S 0.25 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 3 130095494 130095494 G A COL6A5 Missense_Mutation p.G161E 0.34 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 3 130284200 130284200 C T COL6A6 Nonsense_Mutation p.R342* 0.32 TCGA-FR-A726-01 3 130287021 130287021 G A COL6A6 Silent p.R658R 0.32 TCGA-FR-A726-01 3 130287188 130287188 C T COL6A6 Missense_Mutation p.P714L 0.34 tolerated(0.29) benign(0.094) TCGA-FR-A726-01 3 130399853 130399853 G A PIK3R4 Silent p.I1255I 0.25 TCGA-FR-A726-01 3 130653500 130653500 C T ATP2C1 Missense_Mutation p.S124F 0.33 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 3 130683792 130683792 G A ATP2C1 Missense_Mutation p.G376D 0.33 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 3 130698095 130698095 C T ATP2C1 Missense_Mutation p.L559F 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A726-01 3 130871299 130871299 T A NEK11 Missense_Mutation p.S239T 0.08 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 3 131261456 131261456 C T CPNE4 Missense_Mutation p.G495E 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 131283104 131283104 C T CPNE4 Silent p.L339L 0.35 TCGA-FR-A726-01 3 132051171 132051171 C T ACPP Missense_Mutation p.P147S 0.42 tolerated(0.13) benign(0.059) TCGA-FR-A726-01 3 133109096 133109096 G A TMEM108 Nonsense_Mutation p.W508* 0.29 TCGA-FR-A726-01 3 133191275 133191275 G A BFSP2 Silent p.L370L 0.26 TCGA-FR-A726-01 3 133476661 133476661 C T TF Missense_Mutation p.P307S 0.30 tolerated(0.11) benign(0.155) TCGA-FR-A726-01 3 133476662 133476662 C T TF Missense_Mutation p.P307L 0.33 deleterious(0.04) possibly_damaging(0.779) TCGA-FR-A726-01 3 133496080 133496080 C T TF Missense_Mutation p.S687L 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 13359277 13359277 G A NUP210 Silent p.F1856F 0.24 TCGA-FR-A726-01 3 13364833 13364833 C T NUP210 Missense_Mutation p.G1582R 0.35 tolerated(0.1) benign(0.411) TCGA-FR-A726-01 3 133667447 133667447 G A SLCO2A1 Silent p.S346S 0.37 TCGA-FR-A726-01 3 133667448 133667448 G A SLCO2A1 Missense_Mutation p.S346F 0.37 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 3 13370322 13370322 G A NUP210 Missense_Mutation p.S1412F 0.27 tolerated(0.16) benign(0.002) TCGA-FR-A726-01 3 133907765 133907765 T C RYK Missense_Mutation p.T341A 0.38 deleterious(0) possibly_damaging(0.791) TCGA-FR-A726-01 3 134967345 134967345 C T EPHB1 Missense_Mutation p.T895I 0.38 tolerated(0.11) benign(0.018) TCGA-FR-A726-01 3 13546067 13546067 C T HDAC11 Missense_Mutation p.R310C 0.42 deleterious(0.02) probably_damaging(0.982) TCGA-FR-A726-01 3 13661236 13661236 G A FBLN2 Missense_Mutation p.G687E 0.20 deleterious(0.01) possibly_damaging(0.519) TCGA-FR-A726-01 3 136714332 136714332 C T IL20RB Silent p.F253F 0.31 TCGA-FR-A726-01 3 138014744 138014744 C T ARMC8 3'UTR 0.37 TCGA-FR-A726-01 3 138014745 138014745 C T ARMC8 3'UTR 0.36 TCGA-FR-A726-01 3 138037013 138037013 C T NME9 Missense_Mutation p.E60K 0.30 deleterious(0.01) probably_damaging(0.927) TCGA-FR-A726-01 3 138116230 138116230 T C MRAS Silent p.D86D 0.39 TCGA-FR-A726-01 3 138174089 138174089 G A ESYT3 Silent p.R141R 0.32 TCGA-FR-A726-01 3 138191562 138191562 C T ESYT3 Missense_Mutation p.P700S 0.30 tolerated(0.63) probably_damaging(0.998) TCGA-FR-A726-01 3 13860698 13860698 C T WNT7A Missense_Mutation p.D265N 0.31 tolerated(0.22) benign(0.288) TCGA-FR-A726-01 3 13860911 13860911 C G WNT7A Missense_Mutation p.E194Q 0.23 tolerated(0.24) benign(0.027) TCGA-FR-A726-01 3 13860912 13860912 C T WNT7A Silent p.E193E 0.24 TCGA-FR-A726-01 3 13860918 13860918 G A WNT7A Silent p.I191I 0.24 TCGA-FR-A726-01 3 138724604 138724604 C T PRR23A Missense_Mutation p.M169I 0.40 tolerated(0.07) benign(0.389) TCGA-FR-A726-01 3 138762974 138762974 G A PRR23C Silent p.F163F 0.26 TCGA-FR-A726-01 3 13896292 13896292 C T WNT7A Missense_Mutation p.E103K 0.26 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A726-01 3 139062830 139062830 C T MRPS22 5'UTR 0.22 TCGA-FR-A726-01 3 139062831 139062831 C T MRPS22 5'UTR 0.23 TCGA-FR-A726-01 3 139171993 139171993 C T RBP2 Missense_Mutation p.D124N 0.28 tolerated(0.16) benign(0.072) TCGA-FR-A726-01 3 139244690 139244690 C T RBP1 Intron 0.33 TCGA-FR-A726-01 3 13978909 13978909 G A FGD5P1 3'Flank 0.32 TCGA-FR-A726-01 3 139894831 139894831 G A CLSTN2 Missense_Mutation p.G50R 0.33 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 3 140123455 140123455 G A CLSTN2 Missense_Mutation p.E162K 0.24 deleterious(0) benign(0.379) TCGA-FR-A726-01 3 140185516 140185516 G A CLSTN2 Silent p.K429K 0.30 TCGA-FR-A726-01 3 140407271 140407271 T A TRIM42 Missense_Mutation p.S583T 0.30 tolerated(0.6) benign(0.021) TCGA-FR-A726-01 3 140785182 140785182 C T SPSB4 Missense_Mutation p.P79L 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 141535584 141535584 C T GRK7 Missense_Mutation p.H452Y 0.22 deleterious(0.02) benign(0.012) TCGA-FR-A726-01 3 142030282 142030282 G A XRN1 3'UTR 0.16 TCGA-FR-A726-01 3 142388297 142388297 C T PLS1 Missense_Mutation p.P46S 0.33 tolerated(0.3) probably_damaging(0.987) TCGA-FR-A726-01 3 142389935 142389935 C T PLS1 Missense_Mutation p.S112F 0.40 deleterious(0) possibly_damaging(0.87) TCGA-FR-A726-01 3 142455355 142455355 C T TRPC1 Missense_Mutation p.L103F 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 1424998 1424998 G A CNTN6 Missense_Mutation p.G808E 0.34 tolerated(0.72) possibly_damaging(0.697) TCGA-FR-A726-01 3 142523366 142523366 A G TRPC1 Missense_Mutation p.N683S 0.38 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 3 142681965 142681965 C T PAQR9 Missense_Mutation p.E72K 0.42 deleterious(0.01) benign(0.017) TCGA-FR-A726-01 3 143691430 143691430 C T C3orf58 Missense_Mutation p.L86F 0.27 tolerated(0.58) benign(0.002) TCGA-FR-A726-01 3 14537990 14537990 C T GRIP2 RNA 0.29 TCGA-FR-A726-01 3 14547233 14547233 C T GRIP2 RNA 0.31 TCGA-FR-A726-01 3 145794574 145794574 G A PLOD2 Missense_Mutation p.P558S 0.29 deleterious(0.01) possibly_damaging(0.836) TCGA-FR-A726-01 3 145912172 145912172 C T PLSCR4 3'UTR 0.31 TCGA-FR-A726-01 3 146239680 146239680 G A PLSCR1 Silent p.V172V 0.30 TCGA-FR-A726-01 3 148459393 148459393 C T AGTR1 Missense_Mutation p.L191F 0.32 tolerated(0.2) benign(0.009) TCGA-FR-A726-01 3 148459479 148459479 G A AGTR1 Nonsense_Mutation p.W219* 0.32 TCGA-FR-A726-01 3 14862814 14862814 G A FGD5 Missense_Mutation p.E746K 0.34 deleterious(0.03) probably_damaging(0.993) TCGA-FR-A726-01 3 149238730 149238730 G A WWTR1 Silent p.T355T 0.31 TCGA-FR-A726-01 3 14949176 14949176 G A FGD5 Silent p.E1098E 0.24 TCGA-FR-A726-01 3 150176469 150176469 C T TSC22D2 3'UTR 0.38 TCGA-FR-A726-01 3 150387122 150387122 G C FAM194A Missense_Mutation p.S487C 0.36 tolerated(0.05) benign(0.414) TCGA-FR-A726-01 3 150932129 150932129 C T P2RY14 Splice_Site 0.31 TCGA-FR-A726-01 3 151046291 151046291 C T P2RY13 Missense_Mutation p.E185K 0.36 tolerated(0.81) benign(0.004) TCGA-FR-A726-01 3 151056332 151056332 G A P2RY12 Missense_Mutation p.S101F 0.21 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 3 151155646 151155646 G A IGSF10 Missense_Mutation p.P2235S 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 151160785 151160785 C T IGSF10 Missense_Mutation p.D1984N 0.32 deleterious(0.05) benign(0.258) TCGA-FR-A726-01 3 151163225 151163225 G A IGSF10 Missense_Mutation p.P1515L 0.37 tolerated(0.34) benign(0) TCGA-FR-A726-01 3 15117211 15117211 A G ZFYVE20 Silent p.L370L 0.27 TCGA-FR-A726-01 3 151598736 151598736 G A SUCNR1 Silent p.K135K 0.24 TCGA-FR-A726-01 3 153847392 153847392 G T ARHGEF26 Nonsense_Mutation p.E385* 0.38 TCGA-FR-A726-01 3 154147482 154147482 C T GPR149 5'UTR 0.41 TCGA-FR-A726-01 3 15457442 15457442 G A METTL6 Missense_Mutation p.P123L 0.08 deleterious(0.01) benign(0.213) TCGA-FR-A726-01 3 154858011 154858011 C T MME Missense_Mutation p.P296L 0.29 tolerated(0.55) probably_damaging(0.982) TCGA-FR-A726-01 3 154858057 154858057 C T MME Silent p.N311N 0.21 TCGA-FR-A726-01 3 155198670 155198670 C T PLCH1 3'UTR 0.26 TCGA-FR-A726-01 3 155199111 155199111 C T PLCH1 Silent p.R1576R 0.37 TCGA-FR-A726-01 3 155199155 155199155 A T PLCH1 Missense_Mutation p.Y1562N 0.06 tolerated(0.25) benign(0.14) TCGA-FR-A726-01 3 155200272 155200272 C T PLCH1 Silent p.E1189E 0.41 TCGA-FR-A726-01 3 155200720 155200720 C T PLCH1 Missense_Mutation p.G1040E 0.39 tolerated_low_confidence(0.94) benign(0.097) TCGA-FR-A726-01 3 155200721 155200721 C T PLCH1 Missense_Mutation p.G1040R 0.39 tolerated_low_confidence(0.58) benign(0.003) TCGA-FR-A726-01 3 155314127 155314127 C T PLCH1 Missense_Mutation p.M28I 0.37 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 3 155838474 155838474 G A KCNAB1 Missense_Mutation p.G25E 0.34 tolerated_low_confidence(0.11) benign(0.031) TCGA-FR-A726-01 3 156170718 156170718 C T KCNAB1 Missense_Mutation p.S117L 0.31 deleterious(0.05) possibly_damaging(0.904) TCGA-FR-A726-01 3 156395820 156395820 C T TIPARP Missense_Mutation p.P112S 0.05 tolerated_low_confidence(0.19) benign(0.018) TCGA-FR-A726-01 3 156745934 156745934 G A LEKR1 Missense_Mutation p.E471K 0.40 tolerated(0.08) possibly_damaging(0.486) TCGA-FR-A726-01 3 159995418 159995418 G A IFT80 Missense_Mutation p.A626V 0.26 tolerated(0.51) benign(0.081) TCGA-FR-A726-01 3 160679587 160679587 G A PPM1L Missense_Mutation p.E155K 0.23 tolerated(0.61) benign(0.035) TCGA-FR-A726-01 3 160783292 160783292 C T PPM1L Missense_Mutation p.P226S 0.29 deleterious(0.01) benign(0.423) TCGA-FR-A726-01 3 160783293 160783293 C T PPM1L Missense_Mutation p.P226L 0.30 deleterious(0) possibly_damaging(0.72) TCGA-FR-A726-01 3 160945120 160945120 C T NMD3 Missense_Mutation p.P89S 0.31 tolerated(0.98) benign(0.003) TCGA-FR-A726-01 3 161064020 161064020 C T SPTSSB Missense_Mutation p.R31Q 0.39 tolerated(0.69) benign(0.003) TCGA-FR-A726-01 3 161221166 161221166 G A OTOL1 Silent p.G290G 0.33 TCGA-FR-A726-01 3 161221643 161221643 G A OTOL1 Nonsense_Mutation p.W449* 0.21 TCGA-FR-A726-01 3 161221691 161221691 C T OTOL1 Silent p.F465F 0.21 TCGA-FR-A726-01 3 16216931 16216931 G A GALNT15 Silent p.R91R 0.33 TCGA-FR-A726-01 3 16260953 16260953 G A GALNT15 Missense_Mutation p.R479K 0.36 tolerated(0.33) benign(0.027) TCGA-FR-A726-01 3 16261037 16261037 G A GALNT15 Missense_Mutation p.G507E 0.30 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 3 164737437 164737437 G A SI Silent p.L1126L 0.30 TCGA-FR-A726-01 3 164905886 164905886 C T SLITRK3 Silent p.K911K 0.07 TCGA-FR-A726-01 3 164906782 164906782 C T SLITRK3 Missense_Mutation p.E613K 0.30 tolerated(0.21) possibly_damaging(0.551) TCGA-FR-A726-01 3 164906892 164906892 C T SLITRK3 Nonsense_Mutation p.W576* 0.32 TCGA-FR-A726-01 3 164907277 164907277 G A SLITRK3 Nonsense_Mutation p.Q448* 0.32 TCGA-FR-A726-01 3 166960340 166960340 G A ZBBX Silent p.F782F 0.31 TCGA-FR-A726-01 3 166960377 166960377 C T ZBBX Missense_Mutation p.S770N 0.27 tolerated(1) benign(0.004) TCGA-FR-A726-01 3 167023494 167023494 C T ZBBX Silent p.L554L 0.31 TCGA-FR-A726-01 3 167051674 167051674 C T ZBBX Missense_Mutation p.E210K 0.39 tolerated(0.17) benign(0.02) TCGA-FR-A726-01 3 167196557 167196557 A T WDR49 3'UTR 0.33 TCGA-FR-A726-01 3 167217996 167217996 C T WDR49 Silent p.R640R 0.39 TCGA-FR-A726-01 3 167218008 167218008 C T WDR49 Silent p.E636E 0.32 TCGA-FR-A726-01 3 167240195 167240195 C T WDR49 Silent p.K542K 0.36 TCGA-FR-A726-01 3 167245683 167245683 C T WDR49 Silent p.L491L 0.38 TCGA-FR-A726-01 3 167319988 167319988 C T WDR49 Missense_Mutation p.G60D 0.46 deleterious(0.02) possibly_damaging(0.901) TCGA-FR-A726-01 3 168833264 168833264 C T MECOM Missense_Mutation p.G676E 0.33 tolerated(1) benign(0.001) TCGA-FR-A726-01 3 168833581 168833581 G A MECOM Silent p.S570S 0.31 TCGA-FR-A726-01 3 168834404 168834404 G A MECOM Missense_Mutation p.S296F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 168845663 168845663 C T MECOM Missense_Mutation p.E143K 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A726-01 3 169540459 169540459 G A LRRIQ4 Silent p.P250P 0.32 TCGA-FR-A726-01 3 169574595 169574595 C T LRRC31 Missense_Mutation p.G185R 0.32 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 3 169587656 169587656 G A LRRC31 5'Flank 0.28 TCGA-FR-A726-01 3 170198102 170198102 G A SLC7A14 Missense_Mutation p.R657W 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 17053356 17053356 G A PLCL2 Missense_Mutation p.E714K 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-FR-A726-01 3 170744540 170744540 C T SLC2A2 5'Flank 0.40 TCGA-FR-A726-01 3 170781631 170781631 G A TNIK 3'UTR 0.35 TCGA-FR-A726-01 3 172013252 172013252 G A FNDC3B Missense_Mutation p.E317K 0.31 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 3 172025235 172025235 C T FNDC3B Missense_Mutation p.P382S 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 172241118 172241118 G A TNFSF10 Silent p.I19I 0.29 TCGA-FR-A726-01 3 172351543 172351543 G A NCEH1 Missense_Mutation p.P357S 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-FR-A726-01 3 172634133 172634133 C T SPATA16 Missense_Mutation p.D493N 0.33 deleterious(0.01) possibly_damaging(0.728) TCGA-FR-A726-01 3 172634134 172634134 C T SPATA16 Silent p.Q492Q 0.33 TCGA-FR-A726-01 3 172634262 172634262 G A SPATA16 Missense_Mutation p.P450S 0.35 tolerated(0.41) possibly_damaging(0.803) TCGA-FR-A726-01 3 178560518 178560518 G A KCNMB2 Silent p.R167R 0.23 TCGA-FR-A726-01 3 179052190 179052190 C T ZNF639 Missense_Mutation p.P480S 0.31 tolerated(0.35) benign(0.01) TCGA-FR-A726-01 3 179526215 179526215 C T PEX5L Missense_Mutation p.E455K 0.09 tolerated(0.31) benign(0.348) TCGA-FR-A726-01 3 179689405 179689405 C T PEX5L Missense_Mutation p.E24K 0.38 deleterious_low_confidence(0) benign(0) TCGA-FR-A726-01 3 183669338 183669338 G A ABCC5 Silent p.S945S 0.32 TCGA-FR-A726-01 3 183755916 183755916 A T HTR3D Missense_Mutation p.E256D 0.24 deleterious(0.05) possibly_damaging(0.648) TCGA-FR-A726-01 3 183777263 183777263 C T HTR3C Silent p.L254L 0.36 TCGA-FR-A726-01 3 183822585 183822585 G A HTR3E Missense_Mutation p.D160N 0.33 tolerated(0.13) benign(0.047) TCGA-FR-A726-01 3 183906051 183906051 C T ABCF3 Missense_Mutation p.P231L 0.35 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 3 183960337 183960337 G A ALG3 Missense_Mutation p.P428S 0.29 tolerated(0.12) benign(0.007) TCGA-FR-A726-01 3 183995094 183995094 C T ECE2 Silent p.I224I 0.10 TCGA-FR-A726-01 3 183995985 183995985 G A ECE2 Missense_Mutation p.D330N 0.30 tolerated(0.53) benign(0.012) TCGA-FR-A726-01 3 184035205 184035205 C T EIF4G1 Missense_Mutation p.P89S 0.29 tolerated(0.06) probably_damaging(0.99) TCGA-FR-A726-01 3 184040494 184040494 G A EIF4G1 Missense_Mutation p.E598K 0.07 deleterious(0.05) benign(0.124) TCGA-FR-A726-01 3 184041590 184041590 C T EIF4G1 Missense_Mutation p.S773F 0.40 deleterious(0) probably_damaging(0.918) TCGA-FR-A726-01 3 184073251 184073251 C T CLCN2 Missense_Mutation p.E413K 0.29 tolerated(0.3) possibly_damaging(0.85) TCGA-FR-A726-01 3 184094045 184094045 C T THPO Translation_Start_Site p.M1? 0.26 deleterious(0) unknown(0) TCGA-FR-A726-01 3 184102390 184102390 C T CHRD Silent p.F502F 0.09 TCGA-FR-A726-01 3 184102819 184102819 C T CHRD Silent p.P537P 0.27 TCGA-FR-A726-01 3 184104452 184104452 C T CHRD Missense_Mutation p.P702L 0.29 deleterious(0) possibly_damaging(0.632) TCGA-FR-A726-01 3 184294774 184294774 C T EPHB3 Missense_Mutation p.A386V 0.25 tolerated(0.59) benign(0.009) TCGA-FR-A726-01 3 184922442 184922442 G A EHHADH Silent p.H224H 0.39 TCGA-FR-A726-01 3 185191457 185191457 G A MAP3K13 Missense_Mutation p.E780K 0.37 tolerated_low_confidence(0.42) benign(0.001) TCGA-FR-A726-01 3 185434463 185434463 G A C3orf65 Missense_Mutation p.R99K 0.29 tolerated_low_confidence(0.33) benign(0.02) TCGA-FR-A726-01 3 186256505 186256505 A T CRYGS Missense_Mutation p.F173I 0.06 tolerated(0.47) benign(0.048) TCGA-FR-A726-01 3 186257302 186257302 G A CRYGS Missense_Mutation p.R36C 0.29 tolerated(0.08) benign(0.294) TCGA-FR-A726-01 3 186360341 186360341 C T FETUB Missense_Mutation p.R140C 0.32 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 3 186457197 186457197 G A KNG1 Silent p.L373L 0.10 TCGA-FR-A726-01 3 186954068 186954068 C T MASP1 Missense_Mutation p.A531T 0.30 tolerated(0.71) benign(0.086) TCGA-FR-A726-01 3 186974582 186974582 G A MASP1 Missense_Mutation p.P205L 0.23 deleterious(0.03) possibly_damaging(0.66) TCGA-FR-A726-01 3 187419794 187419794 G A RTP2 Silent p.A41A 0.24 TCGA-FR-A726-01 3 188956521 188956521 G A TPRG1 Splice_Site p.X101_splice 0.34 TCGA-FR-A726-01 3 188956522 188956522 G A TPRG1 Silent p.K101K 0.34 TCGA-FR-A726-01 3 189349302 189349302 G A TP63 5'UTR 0.30 TCGA-FR-A726-01 3 189526100 189526100 C T TP63 Nonsense_Mutation p.Q122* 0.22 TCGA-FR-A726-01 3 189604275 189604275 T C TP63 Missense_Mutation p.L481P 0.28 tolerated(0.08) probably_damaging(0.997) TCGA-FR-A726-01 3 189612096 189612096 C T TP63 Silent p.L616L 0.29 TCGA-FR-A726-01 3 189681802 189681802 C T LEPREL1 Missense_Mutation p.G660E 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 189689789 189689789 C T LEPREL1 Silent p.Q569Q 0.32 TCGA-FR-A726-01 3 189700914 189700914 C T LEPREL1 Silent p.V415V 0.29 TCGA-FR-A726-01 3 190026043 190026043 G A CLDN1 3'UTR 0.31 TCGA-FR-A726-01 3 190159229 190159229 G A TMEM207 Silent p.I52I 0.29 TCGA-FR-A726-01 3 190993107 190993107 C T UTS2B Missense_Mutation p.E90K 0.30 tolerated(0.28) benign(0.016) TCGA-FR-A726-01 3 191092902 191092902 C A CCDC50 Missense_Mutation p.P167H 0.23 tolerated(0.08) possibly_damaging(0.568) TCGA-FR-A726-01 3 191888437 191888437 G A FGF12 Silent p.F141F 0.34 TCGA-FR-A726-01 3 192980836 192980836 G A HRASLS Missense_Mutation p.D178N 0.07 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A726-01 3 193029711 193029711 C T ATP13A5 Missense_Mutation p.G780E 0.33 tolerated(1) benign(0.024) TCGA-FR-A726-01 3 193068933 193068933 C T ATP13A5 Missense_Mutation p.G222S 0.37 tolerated(0.19) benign(0.244) TCGA-FR-A726-01 3 193166119 193166119 C T ATP13A4 Silent p.R676R 0.11 TCGA-FR-A726-01 3 193174932 193174932 T G ATP13A4 Missense_Mutation p.E591A 0.34 tolerated(0.07) benign(0.031) TCGA-FR-A726-01 3 194080442 194080442 C T LRRC15 Missense_Mutation p.R450K 0.32 tolerated(1) benign(0.058) TCGA-FR-A726-01 3 194081061 194081061 G A LRRC15 Missense_Mutation p.P244S 0.28 tolerated(0.08) benign(0.049) TCGA-FR-A726-01 3 194346659 194346659 G A TMEM44 Missense_Mutation p.P109S 0.30 deleterious(0) probably_damaging(0.954) TCGA-FR-A726-01 3 194392964 194392964 G A LSG1 5'UTR 0.38 TCGA-FR-A726-01 3 195295876 195295876 G A APOD Silent p.L155L 0.22 TCGA-FR-A726-01 3 195516547 195516547 G A MUC4 Missense_Mutation p.S635F 0.31 unknown(0) TCGA-FR-A726-01 3 195517442 195517442 G A MUC4 Nonsense_Mutation p.Q337* 0.32 TCGA-FR-A726-01 3 195517752 195517752 C T MUC4 Silent p.G233G 0.08 TCGA-FR-A726-01 3 195517753 195517753 C T MUC4 Missense_Mutation p.G233E 0.09 unknown(0) TCGA-FR-A726-01 3 19556837 19556837 G A KCNH8 Missense_Mutation p.G820E 0.26 tolerated(0.47) possibly_damaging(0.642) TCGA-FR-A726-01 3 195605195 195605195 G A TNK2 Silent p.A458A 0.32 TCGA-FR-A726-01 3 195798909 195798909 A T TFRC Silent p.R183R 0.24 TCGA-FR-A726-01 3 195956824 195956824 C T SLC51A Silent p.F224F 0.31 TCGA-FR-A726-01 3 196051264 196051264 C T TM4SF19 Silent p.L109L 0.33 TCGA-FR-A726-01 3 196288161 196288161 G A WDR53 Silent p.S62S 0.32 TCGA-FR-A726-01 3 196612926 196612926 C T SENP5 Missense_Mutation p.P292S 0.29 tolerated(0.43) benign(0.043) TCGA-FR-A726-01 3 197241154 197241154 G A BDH1 Silent p.P181P 0.33 TCGA-FR-A726-01 3 197410230 197410230 G A KIAA0226 Missense_Mutation p.P643L 0.33 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 3 197421426 197421426 A G KIAA0226 Silent p.L502L 0.34 TCGA-FR-A726-01 3 197483326 197483326 G A FYTTD1 Missense_Mutation p.G45R 0.33 tolerated(0.27) possibly_damaging(0.876) TCGA-FR-A726-01 3 19930139 19930139 C T EFHB Missense_Mutation p.G577E 0.10 deleterious(0) possibly_damaging(0.833) TCGA-FR-A726-01 3 20141413 20141413 G A KAT2B Silent p.K212K 0.27 TCGA-FR-A726-01 3 21462821 21462821 C T ZNF385D Missense_Mutation p.R358Q 0.49 deleterious(0.02) possibly_damaging(0.885) TCGA-FR-A726-01 3 21467063 21467063 C T ZNF385D Missense_Mutation p.G258E 0.29 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 3 21478603 21478603 C T ZNF385D Missense_Mutation p.E178K 0.29 tolerated(0.76) benign(0.017) TCGA-FR-A726-01 3 21478604 21478604 C T ZNF385D Silent p.V177V 0.29 TCGA-FR-A726-01 3 21552353 21552353 C T ZNF385D Missense_Mutation p.D147N 0.23 tolerated(0.23) benign(0.086) TCGA-FR-A726-01 3 27152652 27152652 C T NEK10 3'UTR 0.53 TCGA-FR-A726-01 3 27436029 27436029 A G SLC4A7 Missense_Mutation p.F1024L 0.36 tolerated(0.22) possibly_damaging(0.719) TCGA-FR-A726-01 3 27436557 27436557 G A SLC4A7 Missense_Mutation p.P909L 0.31 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 3 27473069 27473069 A C SLC4A7 Silent p.L281L 0.06 TCGA-FR-A726-01 3 2967331 2967331 C T CNTN4 Missense_Mutation p.S409L 0.34 deleterious(0.01) possibly_damaging(0.74) TCGA-FR-A726-01 3 3076416 3076416 C T CNTN4 Silent p.T628T 0.10 TCGA-FR-A726-01 3 30875725 30875725 G A GADL1 Silent p.L318L 0.32 TCGA-FR-A726-01 3 31661270 31661270 C T STT3B Silent p.F425F 0.29 TCGA-FR-A726-01 3 32030665 32030665 G A ZNF860 Missense_Mutation p.E32K 0.29 deleterious(0.03) probably_damaging(0.949) TCGA-FR-A726-01 3 32932117 32932117 C T TRIM71 Missense_Mutation p.S474F 0.29 deleterious(0) possibly_damaging(0.854) TCGA-FR-A726-01 3 32994989 32994989 C T CCR4 Silent p.I25I 0.34 TCGA-FR-A726-01 3 33134869 33134869 G A TMPPE Silent p.F273F 0.33 TCGA-FR-A726-01 3 33165994 33165994 C T CRTAP Missense_Mutation p.A239V 0.23 tolerated(0.63) benign(0.03) TCGA-FR-A726-01 3 33194496 33194496 C T SUSD5 Missense_Mutation p.G543E 0.10 tolerated(0.36) benign(0.127) TCGA-FR-A726-01 3 35729278 35729278 G A ARPP21 Silent p.E103E 0.09 TCGA-FR-A726-01 3 35732412 35732412 C T ARPP21 Nonsense_Mutation p.R201* 0.07 TCGA-FR-A726-01 3 35835268 35835268 G A ARPP21 Missense_Mutation p.G754S 0.39 tolerated(0.3) benign(0.004) TCGA-FR-A726-01 3 36763108 36763108 C T DCLK3 Missense_Mutation p.D499N 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 36779949 36779949 C T DCLK3 Missense_Mutation p.G68R 0.34 tolerated(0.68) benign(0.003) TCGA-FR-A726-01 3 36873929 36873929 C T TRANK1 Missense_Mutation p.G2338E 0.34 deleterious(0.02) possibly_damaging(0.747) TCGA-FR-A726-01 3 36875238 36875238 G A TRANK1 Missense_Mutation p.R1902W 0.34 deleterious(0) possibly_damaging(0.88) TCGA-FR-A726-01 3 36884145 36884145 C T TRANK1 Missense_Mutation p.G1706R 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 36898069 36898069 C T TRANK1 Silent p.V1004V 0.30 TCGA-FR-A726-01 3 36898321 36898321 C T TRANK1 Silent p.R920R 0.35 TCGA-FR-A726-01 3 36898705 36898705 G A TRANK1 Silent p.I792I 0.31 TCGA-FR-A726-01 3 36899415 36899415 G A TRANK1 Nonsense_Mutation p.Q556* 0.33 TCGA-FR-A726-01 3 38052904 38052904 C T PLCD1 Silent p.E218E 0.09 TCGA-FR-A726-01 3 38061707 38061707 C T PLCD1 Silent p.K78K 0.35 TCGA-FR-A726-01 3 38065833 38065833 C T PLCD1 Missense_Mutation p.R31K 0.31 tolerated(0.66) benign(0.001) TCGA-FR-A726-01 3 38104139 38104139 G A DLEC1 Missense_Mutation p.R314K 0.23 tolerated(0.11) benign(0.335) TCGA-FR-A726-01 3 38138070 38138070 G A DLEC1 Missense_Mutation p.E728K 0.35 tolerated(0.19) benign(0.019) TCGA-FR-A726-01 3 38149919 38149919 C T DLEC1 Silent p.F1014F 0.48 TCGA-FR-A726-01 3 38417658 38417658 C T XYLB Missense_Mutation p.S352F 0.31 deleterious(0.05) benign(0.078) TCGA-FR-A726-01 3 38518806 38518806 G A ACVR2B Silent p.R27R 0.25 TCGA-FR-A726-01 3 38542981 38542981 C T EXOG Missense_Mutation p.S150L 0.43 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 3 38592724 38592724 C T SCN5A Nonsense_Mutation p.W1713* 0.32 TCGA-FR-A726-01 3 38620951 38620951 G A SCN5A Silent p.A1088A 0.33 TCGA-FR-A726-01 3 38622601 38622601 C T SCN5A Missense_Mutation p.E1017K 0.31 tolerated(0.78) benign(0.004) TCGA-FR-A726-01 3 38628891 38628891 C T SCN5A Silent p.L812L 0.33 TCGA-FR-A726-01 3 38645489 38645489 C T SCN5A Missense_Mutation p.R535Q 0.22 tolerated(0.13) probably_damaging(0.997) TCGA-FR-A726-01 3 38648289 38648289 C T SCN5A Silent p.E337E 0.09 TCGA-FR-A726-01 3 38739168 38739168 C T SCN10A Nonsense_Mutation p.W1848* 0.30 TCGA-FR-A726-01 3 38739935 38739935 C T SCN10A Silent p.G1592G 0.33 TCGA-FR-A726-01 3 38743337 38743337 G A SCN10A Silent p.S1550S 0.24 TCGA-FR-A726-01 3 38766803 38766803 C T SCN10A Silent p.Q1030Q 0.28 TCGA-FR-A726-01 3 38802845 38802845 G A SCN10A Missense_Mutation p.H241Y 0.26 deleterious(0) probably_damaging(0.962) TCGA-FR-A726-01 3 38889207 38889207 G A SCN11A Nonsense_Mutation p.Q1452* 0.27 TCGA-FR-A726-01 3 38891933 38891933 C T SCN11A Intron 0.30 TCGA-FR-A726-01 3 38892219 38892219 G A SCN11A Silent p.F1360F 0.29 TCGA-FR-A726-01 3 38913741 38913741 G A SCN11A Silent p.F1146F 0.31 TCGA-FR-A726-01 3 38936213 38936213 G A SCN11A Silent p.P882P 0.27 TCGA-FR-A726-01 3 38938664 38938664 T C SCN11A Missense_Mutation p.K692R 0.45 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 38941395 38941395 G A SCN11A Missense_Mutation p.S671F 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-FR-A726-01 3 38946806 38946806 G A SCN11A Missense_Mutation p.L494F 0.30 tolerated(0.14) benign(0.06) TCGA-FR-A726-01 3 38968337 38968337 G A SCN11A Nonsense_Mutation p.R192* 0.11 TCGA-FR-A726-01 3 38968369 38968369 C G SCN11A Missense_Mutation p.R181T 0.35 deleterious(0.01) probably_damaging(0.92) TCGA-FR-A726-01 3 38968394 38968394 C T SCN11A Missense_Mutation p.E173K 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 38991681 38991681 G A SCN11A Missense_Mutation p.A58V 0.28 tolerated(0.19) benign(0.009) TCGA-FR-A726-01 3 38991730 38991730 C T SCN11A Missense_Mutation p.D42N 0.34 tolerated(0.17) benign(0.038) TCGA-FR-A726-01 3 39169943 39169943 C T TTC21A Silent p.F555F 0.35 TCGA-FR-A726-01 3 39307216 39307216 A G CX3CR1 Missense_Mutation p.F294S 0.30 tolerated(0.15) probably_damaging(0.989) TCGA-FR-A726-01 3 401977 401977 T G CHL1 Missense_Mutation p.F392L 0.29 tolerated(0.77) benign(0.007) TCGA-FR-A726-01 3 40567277 40567277 G A ZNF621 5'UTR 0.31 TCGA-FR-A726-01 3 41291002 41291002 C T ULK4 Missense_Mutation p.E1248K 0.29 tolerated(0.44) benign(0.05) TCGA-FR-A726-01 3 41439679 41439679 T C ULK4 Missense_Mutation p.E1190G 0.08 deleterious(0.01) possibly_damaging(0.589) TCGA-FR-A726-01 3 42560815 42560815 C T VIPR1 Silent p.S95S 0.15 TCGA-FR-A726-01 3 42735116 42735116 C T HHATL Missense_Mutation p.R414Q 0.26 tolerated(0.74) benign(0.003) TCGA-FR-A726-01 3 42906541 42906541 G T ACKR2 Missense_Mutation p.V183L 0.32 tolerated(0.05) possibly_damaging(0.779) TCGA-FR-A726-01 3 42917090 42917090 C T CYP8B1 Silent p.G73G 0.31 TCGA-FR-A726-01 3 42950305 42950305 C T ZNF662 Missense_Mutation p.P79S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A726-01 3 42956100 42956100 C T ZNF662 Missense_Mutation p.L205F 0.32 tolerated(0.19) benign(0.025) TCGA-FR-A726-01 3 42956534 42956534 G A ZNF662 Silent p.Q349Q 0.23 TCGA-FR-A726-01 3 433444 433444 G A CHL1 Missense_Mutation p.G960R 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 43618700 43618700 C T ANO10 Missense_Mutation p.E216K 0.27 tolerated(0.06) possibly_damaging(0.877) TCGA-FR-A726-01 3 44612076 44612076 G A ZKSCAN7 Missense_Mutation p.E492K 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 44612166 44612166 C T ZKSCAN7 Missense_Mutation p.P522S 0.33 deleterious(0) possibly_damaging(0.747) TCGA-FR-A726-01 3 44612312 44612312 G A ZKSCAN7 Silent p.Q570Q 0.41 TCGA-FR-A726-01 3 44692541 44692541 C T ZNF35 5'UTR 0.23 TCGA-FR-A726-01 3 44694062 44694062 C T ZNF35 Missense_Mutation p.S69F 0.31 tolerated_low_confidence(1) benign(0) TCGA-FR-A726-01 3 44700836 44700836 C T ZNF35 Silent p.V327V 0.33 TCGA-FR-A726-01 3 44700902 44700902 C T ZNF35 Silent p.L349L 0.31 TCGA-FR-A726-01 3 45152122 45152122 G A CDCP1 Silent p.T289T 0.06 TCGA-FR-A726-01 3 45589071 45589071 C T LARS2 3'UTR 0.39 TCGA-FR-A726-01 3 45817262 45817262 G A SLC6A20 Silent p.S191S 0.31 TCGA-FR-A726-01 3 46307279 46307279 C T CCR3 Silent p.L231L 0.22 TCGA-FR-A726-01 3 46307280 46307280 C T CCR3 Missense_Mutation p.P232S 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 46399826 46399826 G A CCR2 Missense_Mutation p.E270K 0.39 tolerated(0.3) benign(0.034) TCGA-FR-A726-01 3 46414396 46414396 G A CCR5 Translation_Start_Site p.M1? 0.35 deleterious(0.01) benign(0.118) TCGA-FR-A726-01 3 46449886 46449886 C T CCRL2 Missense_Mutation p.L118F 0.28 tolerated(0.13) benign(0.394) TCGA-FR-A726-01 3 46488886 46488886 C T LTF Missense_Mutation p.G406R 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-FR-A726-01 3 46586728 46586728 C T LRRC2 Nonsense_Mutation p.W47* 0.36 TCGA-FR-A726-01 3 46619442 46619442 C T TDGF1 5'UTR 0.28 TCGA-FR-A726-01 3 46621317 46621317 G A TDGF1 Silent p.R104R 0.34 TCGA-FR-A726-01 3 46712996 46712996 G A ALS2CL Silent p.F921F 0.33 TCGA-FR-A726-01 3 46718182 46718182 C T ALS2CL Missense_Mutation p.E660K 0.44 tolerated(0.1) possibly_damaging(0.703) TCGA-FR-A726-01 3 46722783 46722783 C T ALS2CL Nonsense_Mutation p.W463* 0.34 TCGA-FR-A726-01 3 46722784 46722784 C T ALS2CL Nonsense_Mutation p.W463* 0.34 TCGA-FR-A726-01 3 46871962 46871962 C T PRSS42 Missense_Mutation p.A272T 0.38 deleterious(0.01) benign(0.314) TCGA-FR-A726-01 3 46871963 46871963 C T PRSS42 Silent p.L271L 0.38 TCGA-FR-A726-01 3 46939377 46939377 C T PTH1R Silent p.L116L 0.26 TCGA-FR-A726-01 3 4725385 4725385 C T ITPR1 Missense_Mutation p.S1119F 0.36 deleterious(0.04) possibly_damaging(0.701) TCGA-FR-A726-01 3 47307225 47307225 G A KIF9 Missense_Mutation p.S304L 0.26 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 3 47454600 47454600 A C PTPN23 Missense_Mutation p.Q1612H 0.31 unknown(0) TCGA-FR-A726-01 3 48423339 48423339 C T FBXW12 Missense_Mutation p.H379Y 0.27 tolerated(0.44) possibly_damaging(0.775) TCGA-FR-A726-01 3 48455480 48455480 C T PLXNB1 Missense_Mutation p.G1404R 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 48610136 48610136 C T COL7A1 Missense_Mutation p.G2290R 0.14 probably_damaging(1) TCGA-FR-A726-01 3 48612532 48612532 C T COL7A1 Missense_Mutation p.G2082R 0.20 unknown(0) TCGA-FR-A726-01 3 48677271 48677271 G A CELSR3 Silent p.I3249I 0.09 TCGA-FR-A726-01 3 48680235 48680235 G A CELSR3 Missense_Mutation p.S2830F 0.34 tolerated(0.18) probably_damaging(0.998) TCGA-FR-A726-01 3 48682616 48682616 G A CELSR3 Silent p.L2608L 0.25 TCGA-FR-A726-01 3 48696507 48696507 G A CELSR3 Silent p.F1187F 0.29 TCGA-FR-A726-01 3 48810501 48810501 G A PRKAR2A Missense_Mutation p.R195C 0.28 deleterious(0.02) benign(0.038) TCGA-FR-A726-01 3 49050427 49050427 C T WDR6 Missense_Mutation p.P517L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 49050428 49050428 C T WDR6 Silent p.P517P 0.32 TCGA-FR-A726-01 3 49054933 49054933 G A DALRD3 Silent p.L244L 0.35 TCGA-FR-A726-01 3 49135647 49135647 C A QARS Missense_Mutation p.G710V 0.37 deleterious(0) probably_damaging(0.969) TCGA-FR-A726-01 3 49166502 49166502 C G LAMB2 Missense_Mutation p.R561P 0.33 tolerated(0.15) probably_damaging(0.963) TCGA-FR-A726-01 3 49294221 49294221 G A CCDC36 Missense_Mutation p.D431N 0.36 tolerated(0.28) benign(0.146) TCGA-FR-A726-01 3 49294424 49294424 G A CCDC36 Silent p.Q498Q 0.32 TCGA-FR-A726-01 3 49395136 49395136 G A GPX1 Silent p.V99V 0.29 TCGA-FR-A726-01 3 49405915 49405915 G A RHOA Missense_Mutation p.P75S 0.37 tolerated(0.06) possibly_damaging(0.552) TCGA-FR-A726-01 3 49570028 49570028 C T DAG1 Missense_Mutation p.A695V 0.33 tolerated(0.13) benign(0.057) TCGA-FR-A726-01 3 49662585 49662585 G A BSN Silent p.R134R 0.23 TCGA-FR-A726-01 3 49689307 49689307 C T BSN Missense_Mutation p.S773F 0.37 unknown(0) TCGA-FR-A726-01 3 49691452 49691452 G A BSN Missense_Mutation p.S1488N 0.31 benign(0.184) TCGA-FR-A726-01 3 49714114 49714114 C T APEH Missense_Mutation p.R273C 0.45 deleterious(0.03) possibly_damaging(0.786) TCGA-FR-A726-01 3 49753384 49753384 G A RNF123 Missense_Mutation p.E1094K 0.33 tolerated(0.17) benign(0.159) TCGA-FR-A726-01 3 49753415 49753415 C T RNF123 Missense_Mutation p.S1104F 0.24 deleterious(0) possibly_damaging(0.794) TCGA-FR-A726-01 3 49755457 49755457 G A AMIGO3 Missense_Mutation p.P481L 0.43 tolerated(0.16) benign(0.019) TCGA-FR-A726-01 3 49785265 49785265 G A IP6K1 Missense_Mutation p.T70I 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 3 49848717 49848717 C T UBA7 Missense_Mutation p.E371K 0.26 deleterious(0) possibly_damaging(0.786) TCGA-FR-A726-01 3 49869456 49869456 G A TRAIP Silent p.F310F 0.28 TCGA-FR-A726-01 3 49897691 49897691 C T CAMKV Nonsense_Mutation p.W285* 0.26 TCGA-FR-A726-01 3 49933740 49933740 C T MST1R Missense_Mutation p.G846E 0.26 deleterious(0.02) possibly_damaging(0.866) TCGA-FR-A726-01 3 50325899 50325899 G A IFRD2 Missense_Mutation p.P461S 0.31 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 3 50387259 50387259 G A NPRL2 Missense_Mutation p.A59V 0.28 tolerated(0.53) possibly_damaging(0.716) TCGA-FR-A726-01 3 50395889 50395889 C T TMEM115 Nonsense_Mutation p.W202* 0.15 TCGA-FR-A726-01 3 50395890 50395890 C T TMEM115 Nonsense_Mutation p.W202* 0.14 TCGA-FR-A726-01 3 50413089 50413089 C T CACNA2D2 Silent p.R631R 0.38 TCGA-FR-A726-01 3 50471844 50471844 C T CACNA2D2 Missense_Mutation p.R102Q 0.33 tolerated(0.4) possibly_damaging(0.477) TCGA-FR-A726-01 3 50614976 50614976 A C HEMK1 Missense_Mutation p.I196L 0.08 deleterious(0.01) benign(0.152) TCGA-FR-A726-01 3 50644940 50644940 G A CISH 3'UTR 0.27 TCGA-FR-A726-01 3 51395194 51395194 C T DOCK3 Silent p.F1563F 0.29 TCGA-FR-A726-01 3 51430741 51430741 G A RBM15B Silent p.K637K 0.44 TCGA-FR-A726-01 3 51697238 51697238 C T RAD54L2 Silent p.S1402S 0.36 TCGA-FR-A726-01 3 51749389 51749389 G A GRM2 Missense_Mutation p.E534K 0.42 deleterious(0.02) possibly_damaging(0.846) TCGA-FR-A726-01 3 51752070 51752070 T G GRM2 Missense_Mutation p.F854C 0.31 tolerated(0.08) benign(0.264) TCGA-FR-A726-01 3 51929156 51929156 C T IQCF1 Missense_Mutation p.R123Q 0.39 tolerated(0.34) benign(0.028) TCGA-FR-A726-01 3 51992937 51992937 G A PCBP4 Silent p.I264I 0.29 TCGA-FR-A726-01 3 52412782 52412782 C T DNAH1 Missense_Mutation p.P2455S 0.20 benign(0.021) TCGA-FR-A726-01 3 52412783 52412783 C T DNAH1 Missense_Mutation p.P2455L 0.21 benign(0.087) TCGA-FR-A726-01 3 52426950 52426950 C T DNAH1 Silent p.S3461S 0.25 TCGA-FR-A726-01 3 52429399 52429399 G A DNAH1 Missense_Mutation p.D3682N 0.33 probably_damaging(1) TCGA-FR-A726-01 3 52512223 52512223 C T NISCH Silent p.L366L 0.28 TCGA-FR-A726-01 3 52512224 52512224 C T NISCH Silent p.L367L 0.28 TCGA-FR-A726-01 3 52540776 52540776 G A STAB1 Silent p.V633V 0.26 TCGA-FR-A726-01 3 52546354 52546354 C T STAB1 Intron 0.39 TCGA-FR-A726-01 3 52841061 52841061 G A ITIH3 Nonsense_Mutation p.W734* 0.24 TCGA-FR-A726-01 3 52960053 52960053 G A SFMBT1 Silent p.F375F 0.32 TCGA-FR-A726-01 3 53133465 53133465 G A RFT1 Silent p.L380L 0.27 TCGA-FR-A726-01 3 53736799 53736799 A G CACNA1D Missense_Mutation p.E451G 0.32 deleterious(0.02) possibly_damaging(0.828) TCGA-FR-A726-01 3 53757543 53757543 C T CACNA1D Silent p.F603F 0.34 TCGA-FR-A726-01 3 54913431 54913431 C T CACNA2D3 Missense_Mutation p.P613S 0.29 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 3 54919338 54919338 C T CACNA2D3 Missense_Mutation p.S648F 0.27 tolerated(0.08) benign(0.352) TCGA-FR-A726-01 3 54933864 54933864 C T CACNA2D3 Silent p.L806L 0.44 TCGA-FR-A726-01 3 54958676 54958676 T C LRTM1 Missense_Mutation p.K192E 0.28 deleterious(0) probably_damaging(0.963) TCGA-FR-A726-01 3 54961975 54961975 G A LRTM1 5'UTR 0.22 TCGA-FR-A726-01 3 55513501 55513501 C T WNT5A Missense_Mutation p.G78R 0.36 deleterious(0.05) possibly_damaging(0.904) TCGA-FR-A726-01 3 55733455 55733455 C T ERC2 Missense_Mutation p.R933Q 0.36 tolerated_low_confidence(0.05) benign(0.046) TCGA-FR-A726-01 3 56207515 56207515 G A ERC2 Missense_Mutation p.P370S 0.30 tolerated(0.94) benign(0.002) TCGA-FR-A726-01 3 56468522 56468522 C T ERC2 Missense_Mutation p.D172N 0.29 deleterious(0.01) possibly_damaging(0.677) TCGA-FR-A726-01 3 58107222 58107222 C T FLNB Missense_Mutation p.P1040S 0.34 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 58134454 58134454 C T FLNB Missense_Mutation p.P2020L 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 3 58145287 58145287 G A FLNB Missense_Mutation p.G2330R 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 58517015 58517015 C G ACOX2 Missense_Mutation p.R261P 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A726-01 3 59908118 59908118 G A FHIT Missense_Mutation p.P101L 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 62180805 62180805 G A PTPRG Missense_Mutation p.D430N 0.32 deleterious(0.05) probably_damaging(0.956) TCGA-FR-A726-01 3 62423848 62423848 G A CADPS Silent p.F1236F 0.34 TCGA-FR-A726-01 3 62467434 62467434 G A CADPS Missense_Mutation p.S1046L 0.36 deleterious(0) benign(0.32) TCGA-FR-A726-01 3 62570915 62570915 G A CADPS Missense_Mutation p.L508F 0.25 deleterious(0) possibly_damaging(0.587) TCGA-FR-A726-01 3 62860795 62860795 G A CADPS 5'UTR 0.21 TCGA-FR-A726-01 3 63638415 63638415 G A SNTN Missense_Mutation p.D18N 0.06 tolerated(0.09) benign(0.005) TCGA-FR-A726-01 3 63981980 63981980 C T ATXN7 Missense_Mutation p.P828S 0.23 tolerated(0.61) benign(0.129) TCGA-FR-A726-01 3 64133037 64133037 C T PRICKLE2 Missense_Mutation p.D377N 0.40 deleterious(0.05) benign(0.384) TCGA-FR-A726-01 3 64601090 64601090 C T ADAMTS9 Silent p.L1032L 0.31 TCGA-FR-A726-01 3 64601750 64601750 C T ADAMTS9 Silent p.G970G 0.29 TCGA-FR-A726-01 3 64644315 64644315 C T ADAMTS9 Missense_Mutation p.E278K 0.38 tolerated(0.34) benign(0.001) TCGA-FR-A726-01 3 64666921 64666921 G A ADAMTS9 Missense_Mutation p.P212L 0.37 tolerated(0.6) benign(0.002) TCGA-FR-A726-01 3 65365004 65365004 C T MAGI1 Missense_Mutation p.G976E 0.16 tolerated(0.12) probably_damaging(0.972) TCGA-FR-A726-01 3 65365005 65365005 C T MAGI1 Missense_Mutation p.G976R 0.17 tolerated(0.42) probably_damaging(0.98) TCGA-FR-A726-01 3 65377020 65377020 C T MAGI1 Missense_Mutation p.R738K 0.39 tolerated(0.14) possibly_damaging(0.907) TCGA-FR-A726-01 3 66431903 66431903 C T LRIG1 Missense_Mutation p.E924K 0.18 tolerated(0.64) benign(0.064) TCGA-FR-A726-01 3 66432741 66432741 C T LRIG1 Missense_Mutation p.R858K 0.38 tolerated(0.28) benign(0.366) TCGA-FR-A726-01 3 67054070 67054070 G A KBTBD8 Missense_Mutation p.E227K 0.26 tolerated(0.75) benign(0.008) TCGA-FR-A726-01 3 67705020 67705020 G A SUCLG2 5'UTR 0.35 TCGA-FR-A726-01 3 71008378 71008378 G A FOXP1 3'UTR 0.34 TCGA-FR-A726-01 3 71247395 71247395 G A FOXP1 Silent p.I46I 0.42 TCGA-FR-A726-01 3 71804085 71804085 C T GPR27 Silent p.L295L 0.32 TCGA-FR-A726-01 3 71821849 71821849 C T PROK2 3'UTR 0.34 TCGA-FR-A726-01 3 7348184 7348184 G A GRM7 Splice_Site p.X293_splice 0.22 TCGA-FR-A726-01 3 7456752 7456752 G A GRM7 Missense_Mutation p.R359K 0.19 tolerated(0.16) probably_damaging(0.987) TCGA-FR-A726-01 3 7620216 7620216 C T GRM7 Silent p.C541C 0.29 TCGA-FR-A726-01 3 78676549 78676549 G A ROBO1 Missense_Mutation p.S1266F 0.31 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 3 79639008 79639008 G A ROBO1 Silent p.S18S 0.30 TCGA-FR-A726-01 3 86028319 86028319 C T CADM2 Missense_Mutation p.P319S 0.27 tolerated(0.26) benign(0.003) TCGA-FR-A726-01 3 8787384 8787384 C T CAV3 Missense_Mutation p.S96F 0.22 deleterious(0) benign(0.323) TCGA-FR-A726-01 3 8794800 8794800 G A OXTR Silent p.L345L 0.31 TCGA-FR-A726-01 3 88040110 88040110 C T HTR1F Missense_Mutation p.L71F 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 3 9032286 9032286 G A SRGAP3 Silent p.S932S 0.26 TCGA-FR-A726-01 3 9055068 9055068 C T SRGAP3 Missense_Mutation p.E691K 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-FR-A726-01 3 96706414 96706414 G A EPHA6 Missense_Mutation p.G231R 0.30 deleterious(0.02) possibly_damaging(0.895) TCGA-FR-A726-01 3 97185327 97185327 G A EPHA6 Intron 0.27 TCGA-FR-A726-01 3 97194269 97194269 C T EPHA6 Silent p.L656L 0.29 TCGA-FR-A726-01 3 97356828 97356828 C T EPHA6 Missense_Mutation p.R896W 0.34 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 3 97596032 97596032 C T CRYBG3 Silent p.S50S 0.28 TCGA-FR-A726-01 3 9759778 9759778 G A CPNE9 Missense_Mutation p.A333T 0.32 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 3 97806208 97806208 C T OR5AC2 Silent p.F64F 0.25 TCGA-FR-A726-01 3 97868239 97868239 G A OR5H14 Missense_Mutation p.E4K 0.34 tolerated(0.47) benign(0.003) TCGA-FR-A726-01 3 97868450 97868450 C T OR5H14 Missense_Mutation p.S74L 0.31 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 3 97887825 97887825 C T OR5H15 Silent p.L94L 0.25 TCGA-FR-A726-01 3 97888281 97888281 C T OR5H15 Silent p.F246F 0.19 TCGA-FR-A726-01 3 9791929 9791929 C T OGG1 5'UTR 0.31 TCGA-FR-A726-01 3 9793488 9793488 C T OGG1 Silent p.C140C 0.24 TCGA-FR-A726-01 3 97983342 97983342 C T OR5H6 Missense_Mutation p.H72Y 0.28 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 3 98001749 98001749 G A OR5H2 Missense_Mutation p.M6I 0.31 deleterious(0.02) benign(0.126) TCGA-FR-A726-01 3 98001750 98001750 G T OR5H2 Nonsense_Mutation p.E7* 0.30 TCGA-FR-A726-01 3 98001845 98001845 G A OR5H2 Silent p.V38V 0.30 TCGA-FR-A726-01 3 98002224 98002224 G A OR5H2 Missense_Mutation p.E165K 0.28 tolerated(0.13) benign(0.022) TCGA-FR-A726-01 3 98073220 98073220 C T OR5K4 Missense_Mutation p.H175Y 0.23 deleterious(0.05) benign(0.29) TCGA-FR-A726-01 3 98110035 98110035 C T OR5K3 Missense_Mutation p.H176Y 0.38 tolerated(0.14) possibly_damaging(0.654) TCGA-FR-A726-01 3 98188698 98188698 C T OR5K1 Missense_Mutation p.S93F 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A726-01 3 98188928 98188928 G A OR5K1 Missense_Mutation p.G170R 0.37 tolerated(0.9) benign(0.149) TCGA-FR-A726-01 3 98189267 98189267 C T OR5K1 Missense_Mutation p.P283S 0.29 deleterious(0.01) possibly_damaging(0.769) TCGA-FR-A726-01 3 98189306 98189306 G A OR5K1 Missense_Mutation p.E296K 0.38 tolerated(0.18) benign(0.011) TCGA-FR-A726-01 3 98216534 98216534 G A OR5K2 Missense_Mutation p.E4K 0.35 tolerated(0.29) benign(0.003) TCGA-FR-A726-01 3 9828733 9828733 G A TADA3 Missense_Mutation p.P256L 0.25 deleterious(0.02) possibly_damaging(0.87) TCGA-FR-A726-01 3 9908883 9908883 C T CIDEC Missense_Mutation p.E228K 0.32 tolerated(0.27) benign(0.004) TCGA-FR-A726-01 3 99513691 99513691 G A COL8A1 Missense_Mutation p.G316R 0.30 deleterious(0.01) unknown(0) TCGA-FR-A726-01 3 99513718 99513718 G A COL8A1 Missense_Mutation p.G325S 0.36 deleterious(0) unknown(0) TCGA-FR-A726-01 3 9956216 9956216 G A IL17RE Intron 0.20 TCGA-FR-A726-01 3 99569810 99569810 G A FILIP1L Missense_Mutation p.S237F 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 4 100203628 100203628 C T ADH1A Missense_Mutation p.E235K 0.28 tolerated(0.31) possibly_damaging(0.711) TCGA-FR-A726-01 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 4 100239311 100239311 C T ADH1B Missense_Mutation p.D51N 0.20 tolerated(0.36) benign(0.282) TCGA-FR-A726-01 4 100239323 100239323 A C ADH1B Missense_Mutation p.C47G 0.16 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 100443831 100443831 C T C4orf17 Missense_Mutation p.P101L 0.42 tolerated(0.44) benign(0.033) TCGA-FR-A726-01 4 100478521 100478521 C T TRMT10A Missense_Mutation p.R134Q 0.29 deleterious(0) possibly_damaging(0.905) TCGA-FR-A726-01 4 100480333 100480333 C T TRMT10A Missense_Mutation p.E55K 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-FR-A726-01 4 100503146 100503146 G A MTTP Missense_Mutation p.G49E 0.38 tolerated(0.22) benign(0.021) TCGA-FR-A726-01 4 100532309 100532309 C T MTTP Silent p.V593V 0.25 TCGA-FR-A726-01 4 101108941 101108941 G A DDIT4L Missense_Mutation p.R159C 0.36 tolerated(0.51) benign(0.001) TCGA-FR-A726-01 4 1017870 1017870 C T FGFRL1 Silent p.T233T 0.35 TCGA-FR-A726-01 4 104059595 104059595 G C CENPE Missense_Mutation p.N2072K 0.26 benign(0.025) TCGA-FR-A726-01 4 104117332 104117332 G A CENPE Nonsense_Mutation p.Q76* 0.35 TCGA-FR-A726-01 4 10445364 10445364 G A ZNF518B Silent p.L863L 0.25 TCGA-FR-A726-01 4 104511123 104511123 G A TACR3 Missense_Mutation p.R372C 0.41 tolerated(0.06) benign(0.071) TCGA-FR-A726-01 4 104512811 104512811 C T TACR3 Missense_Mutation p.M306I 0.31 tolerated(0.12) benign(0.001) TCGA-FR-A726-01 4 105393493 105393493 G A CXXC4 Nonsense_Mutation p.R364* 0.27 TCGA-FR-A726-01 4 105393494 105393494 G A CXXC4 Silent p.F363F 0.27 TCGA-FR-A726-01 4 106861775 106861775 G A NPNT Missense_Mutation p.D279N 0.28 tolerated(0.84) benign(0.004) TCGA-FR-A726-01 4 106863463 106863463 G A NPNT Splice_Site p.X285_splice 0.29 TCGA-FR-A726-01 4 106863742 106863742 G A NPNT Missense_Mutation p.E378K 0.27 tolerated(0.44) benign(0.002) TCGA-FR-A726-01 4 107163713 107163713 C T TBCK Missense_Mutation p.D362N 0.32 tolerated(0.25) benign(0.141) TCGA-FR-A726-01 4 1073463 1073463 C T RNF212 Missense_Mutation p.E160K 0.32 tolerated(0.07) possibly_damaging(0.544) TCGA-FR-A726-01 4 107845215 107845215 C T DKK2 Missense_Mutation p.E226K 0.33 deleterious(0) probably_damaging(0.971) TCGA-FR-A726-01 4 108948874 108948874 C T HADH Silent p.L223L 0.29 TCGA-FR-A726-01 4 109089000 109089000 G A LEF1 5'UTR 0.32 TCGA-FR-A726-01 4 109089001 109089001 G A LEF1 5'UTR 0.32 TCGA-FR-A726-01 4 110453881 110453881 C T SEC24B Silent p.F1159F 0.12 TCGA-FR-A726-01 4 1107255 1107255 C T RNF212 5'UTR 0.38 TCGA-FR-A726-01 4 110788932 110788932 T C LRIT3 Missense_Mutation p.L242S 0.34 tolerated(0.19) benign(0.126) TCGA-FR-A726-01 4 110895916 110895916 G A EGF Silent p.K594K 0.32 TCGA-FR-A726-01 4 110908961 110908961 G A EGF Silent p.E851E 0.35 TCGA-FR-A726-01 4 111397739 111397739 C T ENPEP Missense_Mutation p.P57S 0.30 tolerated(0.15) benign(0.11) TCGA-FR-A726-01 4 111430816 111430816 C T ENPEP Silent p.I349I 0.09 TCGA-FR-A726-01 4 111463966 111463966 C T ENPEP Missense_Mutation p.H623Y 0.31 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 4 113189382 113189382 G A AP1AR Silent p.K242K 0.31 TCGA-FR-A726-01 4 113352749 113352749 T A ALPK1 Silent p.I682I 0.31 TCGA-FR-A726-01 4 113461187 113461187 C T C4orf21 Missense_Mutation p.E2002K 0.25 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 113461188 113461188 C T C4orf21 Silent p.K2001K 0.25 TCGA-FR-A726-01 4 11400739 11400739 G A HS3ST1 Silent p.F297F 0.25 TCGA-FR-A726-01 4 11401615 11401615 G A HS3ST1 Silent p.L5L 0.45 TCGA-FR-A726-01 4 114294270 114294270 C T ANK2 Missense_Mutation p.P3879S 0.09 benign(0.329) TCGA-FR-A726-01 4 114824634 114824634 G A ARSJ Missense_Mutation p.S199F 0.37 tolerated(0.69) probably_damaging(0.997) TCGA-FR-A726-01 4 115544645 115544645 C G UGT8 Silent p.S203S 0.06 TCGA-FR-A726-01 4 115589330 115589330 C T UGT8 Missense_Mutation p.P378S 0.33 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 4 115760572 115760572 G A NDST4 Missense_Mutation p.H750Y 0.40 deleterious(0.03) probably_damaging(0.977) TCGA-FR-A726-01 4 115997314 115997314 C T NDST4 Silent p.G293G 0.38 TCGA-FR-A726-01 4 119161816 119161816 C T NDST3 Silent p.I752I 0.42 TCGA-FR-A726-01 4 119810046 119810046 G A SYNPO2 5'UTR 0.45 TCGA-FR-A726-01 4 119810146 119810146 C T SYNPO2 5'UTR 0.25 TCGA-FR-A726-01 4 119953026 119953027 - C SYNPO2 Frame_Shift_Ins p.P1034Sfs*80 0.28 TCGA-FR-A726-01 4 119978767 119978767 C T SYNPO2 Missense_Mutation p.S1155F 0.29 deleterious(0) probably_damaging(0.96) TCGA-FR-A726-01 4 121675722 121675722 G A PRDM5 Missense_Mutation p.R537C 0.34 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 4 121706234 121706234 C T PRDM5 Missense_Mutation p.E401K 0.32 deleterious(0) possibly_damaging(0.744) TCGA-FR-A726-01 4 121738038 121738038 G A PRDM5 Missense_Mutation p.S231L 0.40 tolerated(0.1) benign(0.004) TCGA-FR-A726-01 4 121957894 121957894 C T NDNF Missense_Mutation p.G411E 0.20 deleterious(0) possibly_damaging(0.609) TCGA-FR-A726-01 4 122068317 122068317 C T TNIP3 Missense_Mutation p.E285K 0.46 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 4 122250677 122250677 C T QRFPR Missense_Mutation p.G363E 0.34 tolerated(0.16) benign(0.002) TCGA-FR-A726-01 4 122254012 122254012 C T QRFPR Missense_Mutation p.R254Q 0.28 tolerated(1) benign(0.004) TCGA-FR-A726-01 4 123145749 123145749 C T KIAA1109 Missense_Mutation p.P904S 0.29 benign(0.293) TCGA-FR-A726-01 4 123302179 123302179 C T ADAD1 Missense_Mutation p.L69F 0.44 tolerated(0.1) benign(0.172) TCGA-FR-A726-01 4 123302226 123302226 G A ADAD1 Silent p.K84K 0.28 TCGA-FR-A726-01 4 123317484 123317484 G A ADAD1 Missense_Mutation p.E226K 0.32 tolerated(0.08) benign(0.26) TCGA-FR-A726-01 4 123663292 123663292 G A BBS12 Missense_Mutation p.R82K 0.31 tolerated(1) benign(0.017) TCGA-FR-A726-01 4 123665196 123665196 C T BBS12 3'UTR 0.36 TCGA-FR-A726-01 4 126239395 126239395 G A FAT4 Missense_Mutation p.G610E 0.37 benign(0.392) TCGA-FR-A726-01 4 126239839 126239839 C T FAT4 Missense_Mutation p.A758V 0.30 benign(0.141) TCGA-FR-A726-01 4 126241272 126241272 G A FAT4 Missense_Mutation p.D1236N 0.09 probably_damaging(1) TCGA-FR-A726-01 4 126329628 126329628 G A FAT4 Missense_Mutation p.D1867N 0.29 probably_damaging(0.994) TCGA-FR-A726-01 4 126367465 126367465 G A FAT4 Missense_Mutation p.G2404E 0.35 probably_damaging(1) TCGA-FR-A726-01 4 126367653 126367653 C T FAT4 Nonsense_Mutation p.Q2467* 0.32 TCGA-FR-A726-01 4 126371563 126371563 G A FAT4 Missense_Mutation p.G3131E 0.36 probably_damaging(1) TCGA-FR-A726-01 4 126371684 126371684 G A FAT4 Nonsense_Mutation p.W3171* 0.06 TCGA-FR-A726-01 4 126384750 126384750 G A FAT4 Missense_Mutation p.E3943K 0.44 benign(0.001) TCGA-FR-A726-01 4 126402685 126402685 C T FAT4 Missense_Mutation p.P4203L 0.35 benign(0.053) TCGA-FR-A726-01 4 126411262 126411262 G A FAT4 Missense_Mutation p.D4429N 0.31 possibly_damaging(0.685) TCGA-FR-A726-01 4 126411586 126411586 C T FAT4 Missense_Mutation p.P4537S 0.30 possibly_damaging(0.773) TCGA-FR-A726-01 4 126411609 126411609 G A FAT4 Silent p.K4544K 0.37 TCGA-FR-A726-01 4 126411610 126411610 G A FAT4 Missense_Mutation p.E4545K 0.37 benign(0.009) TCGA-FR-A726-01 4 126412458 126412458 G A FAT4 Silent p.R4827R 0.30 TCGA-FR-A726-01 4 138442091 138442091 T A PCDH18 3'UTR 0.36 TCGA-FR-A726-01 4 138442470 138442470 G A PCDH18 Missense_Mutation p.P1041S 0.44 tolerated(0.4) benign(0.013) TCGA-FR-A726-01 4 138442631 138442631 C T PCDH18 Missense_Mutation p.G987E 0.27 deleterious(0) probably_damaging(0.925) TCGA-FR-A726-01 4 138449706 138449706 C T PCDH18 Missense_Mutation p.R889Q 0.33 tolerated(0.06) benign(0.195) TCGA-FR-A726-01 4 138450883 138450883 C T PCDH18 Missense_Mutation p.R787K 0.35 tolerated(0.26) possibly_damaging(0.688) TCGA-FR-A726-01 4 138451538 138451538 C T PCDH18 Missense_Mutation p.E569K 0.37 tolerated(0.2) probably_damaging(0.999) TCGA-FR-A726-01 4 138451800 138451800 C T PCDH18 Silent p.G481G 0.40 TCGA-FR-A726-01 4 138452999 138452999 C T PCDH18 Missense_Mutation p.D82N 0.25 deleterious(0.04) benign(0.005) TCGA-FR-A726-01 4 138453061 138453061 G A PCDH18 Missense_Mutation p.P61L 0.28 tolerated(0.21) benign(0.403) TCGA-FR-A726-01 4 141483372 141483372 C T UCP1 Missense_Mutation p.E262K 0.10 deleterious(0.03) benign(0.226) TCGA-FR-A726-01 4 141543768 141543768 C T TBC1D9 Missense_Mutation p.G1128R 0.07 tolerated_low_confidence(0.26) benign(0.059) TCGA-FR-A726-01 4 141592068 141592068 C T TBC1D9 Missense_Mutation p.E358K 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 4 141622658 141622658 C T TBC1D9 Missense_Mutation p.G81S 0.22 tolerated(0.11) possibly_damaging(0.706) TCGA-FR-A726-01 4 141622709 141622709 G A TBC1D9 Nonsense_Mutation p.R64* 0.39 TCGA-FR-A726-01 4 144801589 144801589 C T GYPE Silent p.K37K 0.18 TCGA-FR-A726-01 4 145039873 145039873 C T GYPA Missense_Mutation p.E89K 0.29 tolerated(0.1) benign(0.164) TCGA-FR-A726-01 4 145041668 145041668 C T GYPA Silent p.K37K 0.17 TCGA-FR-A726-01 4 145629453 145629453 G A HHIP Missense_Mutation p.D431N 0.26 tolerated(1) benign(0.003) TCGA-FR-A726-01 4 146744671 146744671 G A ZNF827 Silent p.F762F 0.25 TCGA-FR-A726-01 4 146770635 146770635 G A ZNF827 Missense_Mutation p.S687L 0.30 deleterious(0) benign(0.143) TCGA-FR-A726-01 4 146807037 146807037 C T ZNF827 Missense_Mutation p.G514R 0.37 deleterious(0.05) benign(0.376) TCGA-FR-A726-01 4 146807170 146807170 G A ZNF827 Silent p.I469I 0.09 TCGA-FR-A726-01 4 146823898 146823898 C T ZNF827 Silent p.R171R 0.34 TCGA-FR-A726-01 4 147741367 147741367 C T TTC29 Silent p.L337L 0.33 TCGA-FR-A726-01 4 147830250 147830250 G A TTC29 Silent p.L110L 0.34 TCGA-FR-A726-01 4 148463838 148463838 G A EDNRA 3'UTR 0.41 TCGA-FR-A726-01 4 149356668 149356668 G A NR3C2 Missense_Mutation p.P449S 0.28 tolerated_low_confidence(0.43) possibly_damaging(0.857) TCGA-FR-A726-01 4 151023850 151023850 C T DCLK2 Silent p.I214I 0.40 TCGA-FR-A726-01 4 151169478 151169478 C T DCLK2 Nonsense_Mutation p.Q650* 0.08 TCGA-FR-A726-01 4 152096385 152096385 G A SH3D19 Missense_Mutation p.P44L 0.27 tolerated(0.06) benign(0.018) TCGA-FR-A726-01 4 152203369 152203369 G A PRSS48 Silent p.V95V 0.28 TCGA-FR-A726-01 4 152626355 152626355 G T PET112 Nonsense_Mutation p.S315* 0.25 TCGA-FR-A726-01 4 153864420 153864420 C T FHDC1 Missense_Mutation p.P71S 0.51 tolerated(0.24) possibly_damaging(0.617) TCGA-FR-A726-01 4 153896132 153896132 G A FHDC1 Silent p.E563E 0.32 TCGA-FR-A726-01 4 153896524 153896524 C T FHDC1 Missense_Mutation p.S694F 0.26 deleterious(0.01) possibly_damaging(0.646) TCGA-FR-A726-01 4 153897628 153897628 G A FHDC1 Missense_Mutation p.R1062Q 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-FR-A726-01 4 154557633 154557633 C T KIAA0922 Missense_Mutation p.R1580C 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A726-01 4 154702486 154702486 C T SFRP2 3'UTR 0.40 TCGA-FR-A726-01 4 155157704 155157704 G A DCHS2 Silent p.I2245I 0.11 TCGA-FR-A726-01 4 155163820 155163820 G A DCHS2 Missense_Mutation p.P1894L 0.29 deleterious(0.02) benign(0.049) TCGA-FR-A726-01 4 155312429 155312429 C T DCHS2 Silent p.T7T 0.32 TCGA-FR-A726-01 4 155507350 155507350 C T FGA Missense_Mutation p.G411S 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 4 155528034 155528034 C T FGG Missense_Mutation p.G318S 0.40 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 4 155528065 155528065 G A FGG Silent p.F307F 0.38 TCGA-FR-A726-01 4 155851 155851 C T ZNF718 RNA 0.37 TCGA-FR-A726-01 4 156136099 156136099 C T NPY2R Silent p.F336F 0.34 TCGA-FR-A726-01 4 157693901 157693901 C T PDGFC Missense_Mutation p.D214N 0.40 tolerated(0.96) benign(0.193) TCGA-FR-A726-01 4 157732062 157732062 C T PDGFC Missense_Mutation p.R141K 0.29 tolerated(0.86) benign(0.009) TCGA-FR-A726-01 4 157771443 157771443 C T PDGFC Missense_Mutation p.E82K 0.26 deleterious(0.05) possibly_damaging(0.747) TCGA-FR-A726-01 4 158059978 158059978 G A GLRB Missense_Mutation p.D210N 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 4 158233903 158233903 G A GRIA2 Missense_Mutation p.G181E 0.07 tolerated(1) benign(0.013) TCGA-FR-A726-01 4 158262426 158262426 G T GRIA2 Missense_Mutation p.G619W 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 158281154 158281154 C T GRIA2 Missense_Mutation p.S717F 0.24 deleterious(0) probably_damaging(0.915) TCGA-FR-A726-01 4 158281283 158281283 G A GRIA2 Missense_Mutation p.G760E 0.22 deleterious(0) benign(0.344) TCGA-FR-A726-01 4 15850321 15850321 G A CD38 3'UTR 0.29 TCGA-FR-A726-01 4 15850322 15850322 G T CD38 3'UTR 0.31 TCGA-FR-A726-01 4 15938276 15938276 C T FGFBP1 Splice_Site 0.37 TCGA-FR-A726-01 4 159568278 159568278 G A RXFP1 Missense_Mutation p.G561R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 160235842 160235842 T C RAPGEF2 Missense_Mutation p.S98P 0.30 tolerated(0.05) possibly_damaging(0.707) TCGA-FR-A726-01 4 162680563 162680563 G A FSTL5 Nonsense_Mutation p.Q243* 0.32 TCGA-FR-A726-01 4 164246330 164246330 G A NPY1R 3'UTR 0.33 TCGA-FR-A726-01 4 164247590 164247590 C T NPY1R Missense_Mutation p.M39I 0.30 tolerated(0.42) benign(0.001) TCGA-FR-A726-01 4 164247755 164247755 G A NPY1R 5'UTR 0.36 TCGA-FR-A726-01 4 16504291 16504291 T A LDB2 Missense_Mutation p.N366I 0.37 deleterious_low_confidence(0) benign(0.24) TCGA-FR-A726-01 4 165878378 165878378 C T FAM218A Silent p.F68F 0.39 TCGA-FR-A726-01 4 165878404 165878404 C T FAM218A Missense_Mutation p.S77F 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-FR-A726-01 4 165962216 165962216 G A TRIM60 Missense_Mutation p.R331K 0.28 tolerated(0.69) benign(0.012) TCGA-FR-A726-01 4 165962599 165962599 G A TRIM60 Missense_Mutation p.E459K 0.24 tolerated(1) benign(0.004) TCGA-FR-A726-01 4 166150047 166150047 T A KLHL2 Missense_Mutation p.F85I 0.23 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 4 166243211 166243211 G A KLHL2 Silent p.%3D 0.35 TCGA-FR-A726-01 4 166403432 166403432 G A CPE Missense_Mutation p.M237I 0.32 tolerated(0.18) probably_damaging(0.977) TCGA-FR-A726-01 4 166408639 166408639 G A CPE Silent p.V341V 0.31 TCGA-FR-A726-01 4 166795022 166795022 G A TLL1 5'UTR 0.34 TCGA-FR-A726-01 4 166986911 166986911 C T TLL1 Missense_Mutation p.A695V 0.30 deleterious(0.05) benign(0.026) TCGA-FR-A726-01 4 166986977 166986977 C T TLL1 Missense_Mutation p.T717I 0.06 deleterious(0) probably_damaging(0.94) TCGA-FR-A726-01 4 167012370 167012370 C T TLL1 Missense_Mutation p.L845F 0.23 deleterious(0) possibly_damaging(0.886) TCGA-FR-A726-01 4 167020465 167020465 G A TLL1 Missense_Mutation p.R898K 0.38 tolerated(1) benign(0.002) TCGA-FR-A726-01 4 167656170 167656170 C T SPOCK3 Missense_Mutation p.E405K 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 4 169060666 169060666 C T ANXA10 Silent p.L44L 0.17 TCGA-FR-A726-01 4 169086426 169086426 T A ANXA10 Silent p.I143I 0.36 TCGA-FR-A726-01 4 169145414 169145414 G A DDX60 Nonsense_Mutation p.R1602* 0.28 TCGA-FR-A726-01 4 169157447 169157447 G A DDX60 Missense_Mutation p.P1497S 0.32 deleterious(0.03) possibly_damaging(0.764) TCGA-FR-A726-01 4 169195176 169195176 G A DDX60 Missense_Mutation p.S788F 0.06 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 4 169300626 169300626 C T DDX60L Silent p.K1417K 0.35 TCGA-FR-A726-01 4 169325171 169325171 C T DDX60L Silent p.K1100K 0.20 TCGA-FR-A726-01 4 169362526 169362526 C T DDX60L Missense_Mutation p.R419K 0.36 tolerated(0.74) benign(0.002) TCGA-FR-A726-01 4 169589344 169589344 G A PALLD Nonsense_Mutation p.W304* 0.36 TCGA-FR-A726-01 4 170028062 170028062 G A SH3RF1 Missense_Mutation p.P812S 0.41 tolerated(0.39) probably_damaging(0.999) TCGA-FR-A726-01 4 170028094 170028094 G A SH3RF1 Missense_Mutation p.S801F 0.26 deleterious(0) possibly_damaging(0.534) TCGA-FR-A726-01 4 170051229 170051229 G A SH3RF1 Missense_Mutation p.P383S 0.30 tolerated(0.3) probably_damaging(0.996) TCGA-FR-A726-01 4 173150813 173150813 C T GALNTL6 Missense_Mutation p.P49S 0.27 tolerated(0.39) benign(0.001) TCGA-FR-A726-01 4 173852339 173852339 G A GALNTL6 Missense_Mutation p.D357N 0.23 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 4 1739053 1739053 C T TACC3 Missense_Mutation p.P612S 0.21 deleterious(0.04) possibly_damaging(0.656) TCGA-FR-A726-01 4 175896679 175896679 G A ADAM29 Translation_Start_Site p.M1? 0.23 tolerated(0.25) benign(0.061) TCGA-FR-A726-01 4 175897377 175897377 C T ADAM29 Missense_Mutation p.S234F 0.36 tolerated(0.11) benign(0.319) TCGA-FR-A726-01 4 175897465 175897465 G A ADAM29 Silent p.R263R 0.28 TCGA-FR-A726-01 4 175898783 175898783 C T ADAM29 Missense_Mutation p.P703S 0.20 tolerated(0.71) benign(0.017) TCGA-FR-A726-01 4 176555969 176555969 C T GPM6A 3'UTR 0.22 TCGA-FR-A726-01 4 176561923 176561923 C T GPM6A Missense_Mutation p.R200K 0.17 tolerated(0.77) benign(0) TCGA-FR-A726-01 4 177138133 177138133 C T ASB5 Nonsense_Mutation p.W233* 0.30 TCGA-FR-A726-01 4 177143471 177143471 C T ASB5 Missense_Mutation p.G126E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 177143472 177143472 C T ASB5 Missense_Mutation p.G126R 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 177608358 177608358 G A VEGFC Silent p.F376F 0.05 TCGA-FR-A726-01 4 183658019 183658019 C T TENM3 Missense_Mutation p.S1009F 0.39 deleterious(0) possibly_damaging(0.831) TCGA-FR-A726-01 4 183721264 183721264 C T TENM3 Silent p.I2620I 0.22 TCGA-FR-A726-01 4 184240924 184240924 C T CLDN22 Missense_Mutation p.D150N 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-FR-A726-01 4 184431719 184431719 C G ING2 Missense_Mutation p.R153G 0.43 deleterious(0) possibly_damaging(0.565) TCGA-FR-A726-01 4 184931525 184931525 C T STOX2 Missense_Mutation p.L512F 0.30 tolerated(0.9) benign(0.001) TCGA-FR-A726-01 4 184932298 184932298 C T STOX2 Silent p.A769A 0.42 TCGA-FR-A726-01 4 185012202 185012202 G T ENPP6 3'UTR 0.31 TCGA-FR-A726-01 4 185941904 185941904 C T HELT Missense_Mutation p.P321L 0.32 deleterious_low_confidence(0.01) benign(0.199) TCGA-FR-A726-01 4 187004566 187004566 G A TLR3 Missense_Mutation p.E576K 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 187073146 187073146 C T FAM149A Silent p.T11T 0.18 TCGA-FR-A726-01 4 187118743 187118743 C T CYP4V2 Missense_Mutation p.R221C 0.32 deleterious(0) probably_damaging(0.93) TCGA-FR-A726-01 4 187159437 187159437 C T KLKB1 Silent p.P172P 0.21 TCGA-FR-A726-01 4 187201418 187201418 G A F11 Missense_Mutation p.G303R 0.23 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 187455284 187455284 G A MTNR1A Silent p.I204I 0.35 TCGA-FR-A726-01 4 187517744 187517744 G A FAT1 Missense_Mutation p.P4317L 0.10 benign(0.354) TCGA-FR-A726-01 4 187521410 187521410 G A FAT1 Silent p.A3915A 0.23 TCGA-FR-A726-01 4 187541564 187541564 G A FAT1 Missense_Mutation p.P2059L 0.29 benign(0.072) TCGA-FR-A726-01 4 187541565 187541565 G A FAT1 Missense_Mutation p.P2059S 0.28 benign(0.129) TCGA-FR-A726-01 4 189020257 189020257 G A TRIML2 Missense_Mutation p.R135C 0.31 tolerated(0.18) benign(0) TCGA-FR-A726-01 4 189061694 189061694 G A TRIML1 Missense_Mutation p.E141K 0.33 deleterious(0.02) benign(0.345) TCGA-FR-A726-01 4 189064797 189064797 G A TRIML1 Intron 0.37 TCGA-FR-A726-01 4 1905991 1905991 C T WHSC1 Missense_Mutation p.H216Y 0.30 tolerated(1) benign(0.028) TCGA-FR-A726-01 4 20493405 20493405 C A SLIT2 Missense_Mutation p.P266H 0.28 deleterious(0.04) benign(0.002) TCGA-FR-A726-01 4 20570555 20570555 G A SLIT2 Missense_Mutation p.D1006N 0.33 tolerated(0.13) probably_damaging(0.999) TCGA-FR-A726-01 4 20598114 20598114 G A SLIT2 Missense_Mutation p.G1133R 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 20618763 20618763 G A SLIT2 Missense_Mutation p.E1360K 0.40 tolerated(0.12) benign(0.029) TCGA-FR-A726-01 4 20852273 20852273 G C KCNIP4 Missense_Mutation p.L61V 0.38 tolerated(0.13) benign(0.063) TCGA-FR-A726-01 4 22749269 22749269 C T GBA3 Nonsense_Mutation p.R213* 0.30 TCGA-FR-A726-01 4 23797526 23797526 G A PPARGC1A Silent p.D772D 0.33 TCGA-FR-A726-01 4 23826113 23826113 G A PPARGC1A Missense_Mutation p.S259F 0.35 deleterious(0.01) possibly_damaging(0.877) TCGA-FR-A726-01 4 25005417 25005417 G A LGI2 Missense_Mutation p.L432F 0.30 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 4 25253984 25253984 C T PI4K2B Missense_Mutation p.P104S 0.25 tolerated(0.09) benign(0.04) TCGA-FR-A726-01 4 25278676 25278676 C T PI4K2B Missense_Mutation p.P438L 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 25353248 25353248 C T ZCCHC4 Silent p.F316F 0.32 TCGA-FR-A726-01 4 25674822 25674822 G A SLC34A2 Missense_Mutation p.G388S 0.21 tolerated(0.07) benign(0.034) TCGA-FR-A726-01 4 25760663 25760663 C T SEL1L3 Missense_Mutation p.E995K 0.34 deleterious(0) possibly_damaging(0.888) TCGA-FR-A726-01 4 25803934 25803934 G A SEL1L3 Missense_Mutation p.L643F 0.42 tolerated(0.27) benign(0.049) TCGA-FR-A726-01 4 25849205 25849205 C T SEL1L3 Silent p.V148V 0.36 TCGA-FR-A726-01 4 26487471 26487471 C T CCKAR Silent p.E138E 0.21 TCGA-FR-A726-01 4 2824746 2824746 C T SH3BP2 Missense_Mutation p.S131F 0.29 deleterious(0) probably_damaging(0.935) TCGA-FR-A726-01 4 3042373 3042373 G A GRK4 3'UTR 0.12 TCGA-FR-A726-01 4 3221940 3221940 G A HTT Missense_Mutation p.G2425E 0.07 benign(0.393) TCGA-FR-A726-01 4 3319438 3319438 C T RGS12 Missense_Mutation p.S514F 0.28 deleterious(0.01) possibly_damaging(0.653) TCGA-FR-A726-01 4 3519786 3519786 G A LRPAP1 Silent p.S242S 0.36 TCGA-FR-A726-01 4 36109261 36109261 G A ARAP2 Missense_Mutation p.S1404L 0.29 tolerated(0.06) possibly_damaging(0.493) TCGA-FR-A726-01 4 37841721 37841721 C T PGM2 Missense_Mutation p.P187S 0.29 deleterious(0.02) probably_damaging(0.919) TCGA-FR-A726-01 4 37841722 37841722 C T PGM2 Missense_Mutation p.P187L 0.29 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 4 38016446 38016446 C T TBC1D1 Missense_Mutation p.A245V 0.25 tolerated(0.33) benign(0.298) TCGA-FR-A726-01 4 38775251 38775251 G A TLR10 Missense_Mutation p.P654L 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 38775556 38775556 G A TLR10 Silent p.T552T 0.08 TCGA-FR-A726-01 4 38775715 38775715 G A TLR10 Silent p.F499F 0.30 TCGA-FR-A726-01 4 38995438 38995438 G A TMEM156 Missense_Mutation p.S180L 0.30 tolerated(0.21) benign(0.213) TCGA-FR-A726-01 4 39343988 39343988 G A RFC1 Missense_Mutation p.P103L 0.33 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-FR-A726-01 4 39408987 39408987 G A KLB Missense_Mutation p.A140T 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 40104497 40104497 C T N4BP2 Silent p.C344C 0.28 TCGA-FR-A726-01 4 40122671 40122671 C T N4BP2 Silent p.T980T 0.27 TCGA-FR-A726-01 4 40438622 40438622 C T RBM47 Missense_Mutation p.R389K 0.29 deleterious(0) probably_damaging(0.952) TCGA-FR-A726-01 4 40439863 40439863 C T RBM47 Missense_Mutation p.D350N 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A726-01 4 40440099 40440099 G A RBM47 Missense_Mutation p.P271L 0.34 deleterious(0.05) possibly_damaging(0.825) TCGA-FR-A726-01 4 40440103 40440103 T G RBM47 Missense_Mutation p.N270H 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-FR-A726-01 4 40440209 40440209 C T RBM47 Silent p.E234E 0.36 TCGA-FR-A726-01 4 40800848 40800848 C T NSUN7 Missense_Mutation p.P443S 0.26 tolerated(0.08) benign(0.057) TCGA-FR-A726-01 4 41263905 41263905 G A UCHL1 Missense_Mutation p.A142T 0.36 tolerated(0.66) benign(0.194) TCGA-FR-A726-01 4 41699372 41699372 C T LIMCH1 3'UTR 0.30 TCGA-FR-A726-01 4 41748139 41748139 C T PHOX2B Silent p.A210A 0.34 TCGA-FR-A726-01 4 41749551 41749551 G A PHOX2B Missense_Mutation p.P82S 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A726-01 4 41750674 41750674 G A PHOX2B 5'UTR 0.34 TCGA-FR-A726-01 4 41956155 41956155 T G TMEM33 Missense_Mutation p.V228G 0.31 deleterious(0) possibly_damaging(0.455) TCGA-FR-A726-01 4 41992732 41992732 C T SLC30A9 Missense_Mutation p.R22C 0.25 tolerated_low_confidence(0.17) benign(0.075) TCGA-FR-A726-01 4 42145705 42145705 G T BEND4 Missense_Mutation p.P265Q 0.27 tolerated_low_confidence(0.96) benign(0.001) TCGA-FR-A726-01 4 42403287 42403287 C T SHISA3 Missense_Mutation p.S179F 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 42424885 42424885 C G ATP8A1 Missense_Mutation p.D1082H 0.33 tolerated(0.38) probably_damaging(0.998) TCGA-FR-A726-01 4 42964963 42964963 C T GRXCR1 Missense_Mutation p.R147C 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 4 42965040 42965040 G A GRXCR1 Silent p.E172E 0.36 TCGA-FR-A726-01 4 435916 435916 G A ZNF721 Silent p.P780P 0.33 TCGA-FR-A726-01 4 435917 435917 G A ZNF721 Missense_Mutation p.P780L 0.31 deleterious(0.03) possibly_damaging(0.792) TCGA-FR-A726-01 4 46066497 46066497 G A GABRG1 Missense_Mutation p.P196S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 46067403 46067403 C T GABRG1 Missense_Mutation p.G174R 0.24 deleterious(0) possibly_damaging(0.845) TCGA-FR-A726-01 4 46099293 46099293 G A GABRG1 Missense_Mutation p.H60Y 0.29 tolerated(0.96) benign(0.006) TCGA-FR-A726-01 4 46252604 46252604 G A GABRA2 Silent p.S359S 0.30 TCGA-FR-A726-01 4 46263943 46263943 C T GABRA2 Silent p.K353K 0.33 TCGA-FR-A726-01 4 46305534 46305534 G A GABRA2 Missense_Mutation p.L267F 0.31 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 4 46307612 46307612 C T GABRA2 Missense_Mutation p.G226R 0.31 deleterious(0.02) benign(0.393) TCGA-FR-A726-01 4 46388181 46388181 C T GABRA2 Missense_Mutation p.D33N 0.25 tolerated(0.12) benign(0.021) TCGA-FR-A726-01 4 46930427 46930427 C T GABRA4 Missense_Mutation p.G494R 0.28 deleterious_low_confidence(0.03) probably_damaging(0.93) TCGA-FR-A726-01 4 46973144 46973144 G A GABRA4 Missense_Mutation p.S277L 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 46979546 46979546 C T GABRA4 Silent p.T125T 0.33 TCGA-FR-A726-01 4 47322179 47322179 G A GABRB1 Missense_Mutation p.R166Q 0.17 deleterious(0.02) possibly_damaging(0.649) TCGA-FR-A726-01 4 47548915 47548915 C T ATP10D Intron 0.35 TCGA-FR-A726-01 4 48037641 48037641 C T NIPAL1 Missense_Mutation p.P229S 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 48492800 48492800 C T ZAR1 Silent p.S164S 0.36 TCGA-FR-A726-01 4 48514613 48514613 G A FRYL Missense_Mutation p.P2677L 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 4 48517148 48517148 C T FRYL Missense_Mutation p.E2612K 0.31 tolerated_low_confidence(0.16) benign(0.018) TCGA-FR-A726-01 4 48592750 48592750 G A FRYL Missense_Mutation p.P478L 0.17 deleterious(0) benign(0.291) TCGA-FR-A726-01 4 48906548 48906548 G A OCIAD2 Missense_Mutation p.R7C 0.30 deleterious(0) benign(0.054) TCGA-FR-A726-01 4 48990548 48990548 C T CWH43 Missense_Mutation p.P33L 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 49034722 49034722 G A CWH43 Missense_Mutation p.G550R 0.42 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 52860678 52860678 C T LRRC66 Nonsense_Mutation p.W837* 0.30 TCGA-FR-A726-01 4 52861867 52861867 G A LRRC66 Missense_Mutation p.H441Y 0.30 tolerated(0.21) benign(0.025) TCGA-FR-A726-01 4 52926626 52926626 C T SPATA18 Silent p.L43L 0.32 TCGA-FR-A726-01 4 55124952 55124952 C A PDGFRA Missense_Mutation p.P6Q 0.27 tolerated(0.32) benign(0) TCGA-FR-A726-01 4 55130960 55130960 C T PDGFRA Intron 0.19 TCGA-FR-A726-01 4 55595507 55595507 C T KIT Missense_Mutation p.T666I 0.31 tolerated(0.26) probably_damaging(0.915) TCGA-FR-A726-01 4 55604627 55604627 C T KIT Silent p.N945N 0.23 TCGA-FR-A726-01 4 55946023 55946023 C T KDR 3'UTR 0.27 TCGA-FR-A726-01 4 55984850 55984852 CAC TT KDR Frame_Shift_Del p.V93Kfs*55 0.21 TCGA-FR-A726-01 4 5617155 5617155 C T EVC2 Silent p.V941V 0.10 TCGA-FR-A726-01 4 56230274 56230282 TAGTATTTC GAGTTTTT SRD5A3 Frame_Shift_Del p.L133Rfs*25 0.21 TCGA-FR-A726-01 4 56325062 56325062 G A CLOCK Silent p.I263I 0.14 TCGA-FR-A726-01 4 57514716 57514716 T G HOPX 3'UTR 0.27 TCGA-FR-A726-01 4 57829662 57829662 G A NOA1 Missense_Mutation p.S684F 0.28 deleterious(0.01) possibly_damaging(0.786) TCGA-FR-A726-01 4 57907079 57907079 G A IGFBP7 Missense_Mutation p.P166S 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 619631 619631 G A PDE6B Missense_Mutation p.M72I 0.31 tolerated(0.49) benign(0.378) TCGA-FR-A726-01 4 62452952 62452952 C T LPHN3 Silent p.S21S 0.16 TCGA-FR-A726-01 4 62845343 62845343 C T LPHN3 Silent p.S888S 0.27 TCGA-FR-A726-01 4 6303094 6303094 C T WFS1 Silent p.F524F 0.29 TCGA-FR-A726-01 4 6377607 6377607 C T PPP2R2C Missense_Mutation p.G129E 0.29 tolerated(0.18) benign(0.37) TCGA-FR-A726-01 4 65146800 65146800 C T TECRL Missense_Mutation p.G308E 0.25 deleterious(0.03) possibly_damaging(0.879) TCGA-FR-A726-01 4 65170938 65170938 C T TECRL Missense_Mutation p.G226R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 4 65170939 65170939 C T TECRL Nonsense_Mutation p.W225* 0.25 TCGA-FR-A726-01 4 65180398 65180398 C T TECRL Silent p.E173E 0.37 TCGA-FR-A726-01 4 656342 656342 C T PDE6B Silent p.A589A 0.08 TCGA-FR-A726-01 4 657999 657999 G A PDE6B Silent p.K706K 0.27 TCGA-FR-A726-01 4 661767 661767 G A PDE6B Silent p.E825E 0.19 TCGA-FR-A726-01 4 661768 661768 G A PDE6B Missense_Mutation p.E826K 0.19 tolerated(1) benign(0.002) TCGA-FR-A726-01 4 66201686 66201686 G A EPHA5 Missense_Mutation p.P939L 0.39 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 4 663945 663945 G A PDE6B 3'UTR 0.34 TCGA-FR-A726-01 4 68384986 68384986 G A CENPC Missense_Mutation p.S189L 0.44 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 4 68691467 68691467 C T TMPRSS11D Missense_Mutation p.G360R 0.28 tolerated(0.16) probably_damaging(0.984) TCGA-FR-A726-01 4 69433930 69433930 C T UGT2B17 Missense_Mutation p.M91I 0.67 tolerated(0.22) benign(0.003) TCGA-FR-A726-01 4 69513029 69513029 G C UGT2B15 Silent p.V462V 0.31 TCGA-FR-A726-01 4 69692212 69692212 C T UGT2B10 Silent p.L362L 0.25 TCGA-FR-A726-01 4 69696361 69696361 C T UGT2B10 Nonsense_Mutation p.Q451* 0.29 TCGA-FR-A726-01 4 69696436 69696436 C T UGT2B10 Nonsense_Mutation p.R476* 0.36 TCGA-FR-A726-01 4 69798408 69798408 G A UGT2A3 Nonsense_Mutation p.Q312* 0.35 TCGA-FR-A726-01 4 69817061 69817061 C T UGT2A3 Missense_Mutation p.E140K 0.34 tolerated(0.24) benign(0.019) TCGA-FR-A726-01 4 70066172 70066172 C T UGT2B11 Missense_Mutation p.G526R 0.28 tolerated(0.24) probably_damaging(0.949) TCGA-FR-A726-01 4 70070294 70070294 G A UGT2B11 Silent p.I388I 0.40 TCGA-FR-A726-01 4 70146499 70146499 T C UGT2B28 Missense_Mutation p.V94A 0.32 deleterious(0.05) benign(0.217) TCGA-FR-A726-01 4 70146718 70146718 C T UGT2B28 Missense_Mutation p.P167L 0.25 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 4 7026944 7026944 C T TBC1D14 Silent p.S657S 0.32 TCGA-FR-A726-01 4 70352336 70352336 C T UGT2B4 Missense_Mutation p.D361N 0.26 deleterious(0.01) possibly_damaging(0.593) TCGA-FR-A726-01 4 70455081 70455081 T A UGT2A1 3'UTR 0.32 TCGA-FR-A726-01 4 70505286 70505286 C T UGT2A2 Missense_Mutation p.E25K 0.35 tolerated(0.43) benign(0.003) TCGA-FR-A726-01 4 70512677 70512677 G A UGT2A1 Missense_Mutation p.S229L 0.29 tolerated(0.18) benign(0.008) TCGA-FR-A726-01 4 70865385 70865385 G A STATH Missense_Mutation p.G18E 0.23 tolerated_low_confidence(0.15) unknown(0) TCGA-FR-A726-01 4 71024249 71024249 C T C4orf40 Missense_Mutation p.P94S 0.31 deleterious(0.02) probably_damaging(0.932) TCGA-FR-A726-01 4 71062448 71062448 G A ODAM Missense_Mutation p.E31K 0.37 deleterious(0) possibly_damaging(0.801) TCGA-FR-A726-01 4 71472271 71472271 G A AMBN Missense_Mutation p.E390K 0.37 tolerated(0.1) possibly_damaging(0.785) TCGA-FR-A726-01 4 71503549 71503549 G A ENAM Missense_Mutation p.E193K 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 71509445 71509445 C T ENAM Missense_Mutation p.H768Y 0.35 tolerated(0.25) benign(0.012) TCGA-FR-A726-01 4 71509688 71509688 C T ENAM Missense_Mutation p.P849S 0.37 tolerated(0.33) benign(0.133) TCGA-FR-A726-01 4 72611908 72611908 C T GC Silent p.L489L 0.29 TCGA-FR-A726-01 4 73012886 73012886 G A NPFFR2 Missense_Mutation p.R309Q 0.33 tolerated(0.31) benign(0.354) TCGA-FR-A726-01 4 73012887 73012887 G A NPFFR2 Silent p.R309R 0.33 TCGA-FR-A726-01 4 73280680 73280680 C T ADAMTS3 Missense_Mutation p.M171I 0.29 tolerated(0.06) benign(0.01) TCGA-FR-A726-01 4 74010469 74010469 A C ANKRD17 Missense_Mutation p.I650M 0.24 probably_damaging(1) TCGA-FR-A726-01 4 74351746 74351746 G A AFM Silent p.E146E 0.33 TCGA-FR-A726-01 4 74354356 74354356 G A AFM Silent p.A241A 0.28 TCGA-FR-A726-01 4 74447573 74447573 G A RASSF6 Missense_Mutation p.P260S 0.24 deleterious(0.03) probably_damaging(0.973) TCGA-FR-A726-01 4 75314923 75314923 G A AREG Missense_Mutation p.G157E 0.77 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 76452420 76452420 C T THAP6 Missense_Mutation p.S222L 0.26 deleterious_low_confidence(0.02) benign(0.115) TCGA-FR-A726-01 4 76489445 76489445 C T C4orf26 Missense_Mutation p.P78L 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-FR-A726-01 4 7684526 7684526 G A SORCS2 Missense_Mutation p.M466I 0.49 deleterious(0.02) benign(0.017) TCGA-FR-A726-01 4 76877231 76877231 G A SDAD1 Missense_Mutation p.S638F 0.35 deleterious(0) possibly_damaging(0.516) TCGA-FR-A726-01 4 77247009 77247009 C T CCDC158 Splice_Site p.X1053_splice 0.33 TCGA-FR-A726-01 4 7731398 7731398 C T SORCS2 Missense_Mutation p.P1023S 0.25 tolerated(0.17) benign(0.006) TCGA-FR-A726-01 4 77660219 77660219 G A SHROOM3 Missense_Mutation p.G298E 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 4 77680845 77680845 G A SHROOM3 Silent p.K1782K 0.36 TCGA-FR-A726-01 4 7787922 7787922 G A AFAP1 Missense_Mutation p.S510L 0.33 tolerated(0.05) benign(0.002) TCGA-FR-A726-01 4 79372957 79372957 A G FRAS1 Silent p.E2165E 0.33 TCGA-FR-A726-01 4 79373471 79373471 G A FRAS1 Silent p.Q2242Q 0.34 TCGA-FR-A726-01 4 79437143 79437143 G A FRAS1 Silent p.G3455G 0.36 TCGA-FR-A726-01 4 79437144 79437144 G A FRAS1 Missense_Mutation p.G3456S 0.38 probably_damaging(0.998) TCGA-FR-A726-01 4 79460483 79460483 C T FRAS1 Silent p.F3778F 0.31 TCGA-FR-A726-01 4 79517019 79517019 G A ANXA3 Silent p.R204R 0.31 TCGA-FR-A726-01 4 79799971 79799971 C T BMP2K Missense_Mutation p.P626L 0.30 deleterious(0) unknown(0) TCGA-FR-A726-01 4 7985000 7985000 C T ABLIM2 Silent p.T605T 0.29 TCGA-FR-A726-01 4 80329073 80329073 C T GK2 Silent p.R94R 0.27 TCGA-FR-A726-01 4 8037886 8037886 C T ABLIM2 Missense_Mutation p.S346N 0.32 deleterious(0.01) benign(0.242) TCGA-FR-A726-01 4 80828617 80828617 C T ANTXR2 Missense_Mutation p.R478Q 0.29 deleterious(0.02) benign(0.007) TCGA-FR-A726-01 4 8089946 8089946 G A ABLIM2 Missense_Mutation p.S135F 0.30 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 4 81187857 81187857 C T FGF5 5'UTR 0.35 TCGA-FR-A726-01 4 81207702 81207702 C T FGF5 Missense_Mutation p.S228F 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-FR-A726-01 4 81884858 81884858 G A C4orf22 3'Flank 0.31 TCGA-FR-A726-01 4 81967744 81967744 C T BMP3 Missense_Mutation p.S390F 0.33 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 81967745 81967745 C T BMP3 Silent p.S390S 0.32 TCGA-FR-A726-01 4 82031632 82031632 C T PRKG2 Missense_Mutation p.G637E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 8221107 8221107 C T SH3TC1 Missense_Mutation p.P321L 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A726-01 4 83372355 83372355 C T ENOPH1 Missense_Mutation p.H116Y 0.34 deleterious(0.04) possibly_damaging(0.897) TCGA-FR-A726-01 4 83796907 83796907 G A SEC31A Silent p.T157T 0.21 TCGA-FR-A726-01 4 84502714 84502714 G A AGPAT9 Splice_Site p.X70_splice 0.38 TCGA-FR-A726-01 4 84519801 84519801 G A AGPAT9 Missense_Mutation p.G377E 0.28 tolerated(0.14) benign(0.007) TCGA-FR-A726-01 4 8477784 8477784 C T TRMT44 3'UTR 0.11 TCGA-FR-A726-01 4 85623542 85623542 G A WDFY3 Missense_Mutation p.P2854S 0.25 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 4 85694053 85694053 G A WDFY3 Missense_Mutation p.P1595L 0.41 deleterious(0) possibly_damaging(0.566) TCGA-FR-A726-01 4 860162 860162 G A GAK Silent p.F1011F 0.16 TCGA-FR-A726-01 4 871506 871506 C T GAK Missense_Mutation p.V585M 0.38 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 4 87684072 87684072 C T PTPN13 Missense_Mutation p.S1249F 0.40 tolerated(0.11) probably_damaging(1) TCGA-FR-A726-01 4 87696600 87696600 T C PTPN13 Missense_Mutation p.S1901P 0.33 tolerated(0.15) possibly_damaging(0.849) TCGA-FR-A726-01 4 87968546 87968546 C T AFF1 Missense_Mutation p.P287S 0.31 tolerated(0.16) probably_damaging(0.994) TCGA-FR-A726-01 4 88415291 88415291 T G SPARCL1 Missense_Mutation p.K221Q 0.09 deleterious(0.02) benign(0.035) TCGA-FR-A726-01 4 88533642 88533642 G A DSPP Missense_Mutation p.E102K 0.46 possibly_damaging(0.705) TCGA-FR-A726-01 4 88580373 88580373 G A DMP1 Missense_Mutation p.G35D 0.22 tolerated(0.06) benign(0.032) TCGA-FR-A726-01 4 89042941 89042941 C T ABCG2 Missense_Mutation p.G179R 0.39 tolerated(0.14) probably_damaging(0.923) TCGA-FR-A726-01 4 90169876 90169876 G A GPRIN3 Silent p.S462S 0.27 TCGA-FR-A726-01 4 90857285 90857285 C T MMRN1 Silent p.S818S 0.25 TCGA-FR-A726-01 4 94006213 94006213 C T GRID2 Silent p.S104S 0.10 TCGA-FR-A726-01 4 94006243 94006243 C T GRID2 Silent p.I114I 0.27 TCGA-FR-A726-01 4 94436524 94436524 G A GRID2 Missense_Mutation p.E719K 0.29 tolerated(0.16) benign(0.087) TCGA-FR-A726-01 4 95229886 95229886 C T HPGDS Missense_Mutation p.G79R 0.28 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 4 96140269 96140269 G A UNC5C Missense_Mutation p.S499F 0.20 deleterious(0.03) possibly_damaging(0.615) TCGA-FR-A726-01 4 96761346 96761346 G A PDHA2 Silent p.Q15Q 0.31 TCGA-FR-A726-01 4 9783912 9783912 G A DRD5 Missense_Mutation p.D87N 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 4 9784034 9784034 C T DRD5 Silent p.S127S 0.29 TCGA-FR-A726-01 4 9784435 9784435 C T DRD5 Missense_Mutation p.S261F 0.40 deleterious(0) possibly_damaging(0.857) TCGA-FR-A726-01 4 9784556 9784556 C T DRD5 Silent p.I301I 0.20 TCGA-FR-A726-01 4 9828010 9828010 G A SLC2A9 3'UTR 0.34 TCGA-FR-A726-01 4 99393696 99393696 C T TSPAN5 Missense_Mutation p.E262K 0.33 tolerated(0.48) benign(0.005) TCGA-FR-A726-01 4 99408012 99408012 G A TSPAN5 Silent p.S52S 0.35 TCGA-FR-A726-01 4 99579324 99579324 G A TSPAN5 Silent p.F18F 0.35 TCGA-FR-A726-01 4 9998415 9998415 C T SLC2A9 Missense_Mutation p.V134I 0.24 tolerated(0.41) benign(0.02) TCGA-FR-A726-01 5 101593000 101593000 G A SLCO4C1 Missense_Mutation p.P430S 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 101735289 101735289 G A SLCO6A1 Missense_Mutation p.S595F 0.26 deleterious(0) probably_damaging(0.954) TCGA-FR-A726-01 5 101834397 101834397 A T SLCO6A1 Missense_Mutation p.L51Q 0.33 tolerated(0.07) probably_damaging(0.96) TCGA-FR-A726-01 5 101834398 101834398 G T SLCO6A1 Missense_Mutation p.L51M 0.33 tolerated(0.3) probably_damaging(0.923) TCGA-FR-A726-01 5 102309885 102309885 T G PAM Missense_Mutation p.Y410D 0.37 tolerated(0.08) possibly_damaging(0.448) TCGA-FR-A726-01 5 1065582 1065582 G A SLC12A7 Silent p.S751S 0.26 TCGA-FR-A726-01 5 109202827 109202827 T G MAN2A1 3'UTR 0.42 TCGA-FR-A726-01 5 111071141 111071141 C T NREP Missense_Mutation p.G67R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 111594944 111594944 G A EPB41L4A Silent p.L259L 0.32 TCGA-FR-A726-01 5 111643149 111643149 G A EPB41L4A Silent p.F46F 0.27 TCGA-FR-A726-01 5 112770175 112770175 G A TSSK1B Missense_Mutation p.S121F 0.32 deleterious(0.04) possibly_damaging(0.722) TCGA-FR-A726-01 5 112917322 112917322 C T YTHDC2 Missense_Mutation p.P1188L 0.36 tolerated(0.4) benign(0.003) TCGA-FR-A726-01 5 112927802 112927802 C T YTHDC2 Missense_Mutation p.P1380L 0.37 deleterious(0) possibly_damaging(0.526) TCGA-FR-A726-01 5 11346594 11346594 C T CTNND2 Silent p.L506L 0.50 TCGA-FR-A726-01 5 11412162 11412162 G A CTNND2 Nonsense_Mutation p.Q103* 0.52 TCGA-FR-A726-01 5 114515721 114515721 C T TRIM36 Missense_Mutation p.G5E 0.31 tolerated(1) benign(0.001) TCGA-FR-A726-01 5 115177274 115177274 G A ATG12 5'UTR 0.30 TCGA-FR-A726-01 5 118454665 118454665 C A DMXL1 Missense_Mutation p.A300D 0.22 tolerated(0.23) benign(0.056) TCGA-FR-A726-01 5 118814691 118814691 G A HSD17B4 Silent p.R224R 0.06 TCGA-FR-A726-01 5 118827797 118827797 T C HSD17B4 Silent p.V264V 0.33 TCGA-FR-A726-01 5 118969664 118969664 G A FAM170A Missense_Mutation p.R74K 0.34 tolerated(0.38) benign(0.019) TCGA-FR-A726-01 5 120022214 120022214 G A PRR16 Missense_Mutation p.G219E 0.34 deleterious_low_confidence(0.04) benign(0.126) TCGA-FR-A726-01 5 120022269 120022269 C T PRR16 Silent p.F237F 0.27 TCGA-FR-A726-01 5 121187886 121187886 C T FTMT Silent p.S76S 0.32 TCGA-FR-A726-01 5 1217037 1217037 G A SLC6A19 Missense_Mutation p.D384N 0.34 tolerated(0.18) benign(0.19) TCGA-FR-A726-01 5 121776154 121776154 C T SNCAIP Intron 0.60 TCGA-FR-A726-01 5 121786650 121786650 C T SNCAIP Missense_Mutation p.P703L 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 121786651 121786651 C T SNCAIP Silent p.P703P 0.27 TCGA-FR-A726-01 5 122181348 122181348 C T SNX24 Missense_Mutation p.S7F 0.39 deleterious(0) possibly_damaging(0.609) TCGA-FR-A726-01 5 122181349 122181349 C T SNX24 Silent p.S7S 0.39 TCGA-FR-A726-01 5 123984589 123984589 G A ZNF608 Silent p.S496S 0.22 TCGA-FR-A726-01 5 126753351 126753351 G A MEGF10 Silent p.E384E 0.28 TCGA-FR-A726-01 5 126771126 126771126 C T MEGF10 Silent p.P683P 0.40 TCGA-FR-A726-01 5 126778722 126778722 C T MEGF10 Missense_Mutation p.R799C 0.36 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 5 127728980 127728980 C T FBN2 Missense_Mutation p.G438E 0.30 deleterious(0.05) possibly_damaging(0.72) TCGA-FR-A726-01 5 128365398 128365398 C T SLC27A6 Nonsense_Mutation p.Q561* 0.36 TCGA-FR-A726-01 5 128440938 128440938 C T ISOC1 Missense_Mutation p.L164F 0.34 tolerated(0.07) probably_damaging(1) TCGA-FR-A726-01 5 128956412 128956412 G A ADAMTS19 Nonsense_Mutation p.W521* 0.30 TCGA-FR-A726-01 5 1294069 1294069 G A TERT Missense_Mutation p.S311L 0.21 tolerated(0.35) benign(0.038) TCGA-FR-A726-01 5 132018217 132018217 G A IL4 Missense_Mutation p.E134K 0.25 tolerated(1) benign(0.002) TCGA-FR-A726-01 5 132018298 132018298 T G IL4 3'UTR 0.43 TCGA-FR-A726-01 5 132200246 132200246 G A GDF9 5'UTR 0.31 TCGA-FR-A726-01 5 132334420 132334420 G A ZCCHC10 Missense_Mutation p.S123F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 5 132534744 132534744 G A FSTL4 3'UTR 0.34 TCGA-FR-A726-01 5 133295377 133295377 G A C5orf15 Silent p.G158G 0.31 TCGA-FR-A726-01 5 133643763 133643763 G A CDKL3 Intron 0.33 TCGA-FR-A726-01 5 133901836 133901836 C T JADE2 Missense_Mutation p.H334Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 134010904 134010904 C T SEC24A Missense_Mutation p.P383L 0.37 deleterious(0.01) possibly_damaging(0.587) TCGA-FR-A726-01 5 134113296 134113296 G A DDX46 Missense_Mutation p.E216K 0.31 tolerated(0.35) benign(0.073) TCGA-FR-A726-01 5 134191250 134191250 C T C5orf24 3'UTR 0.30 TCGA-FR-A726-01 5 134367080 134367080 G A PITX1 Silent p.F96F 0.32 TCGA-FR-A726-01 5 134781981 134781981 C T TIFAB 3'UTR 0.28 TCGA-FR-A726-01 5 134782645 134782645 C T C5orf20 Missense_Mutation p.E52K 0.38 tolerated_low_confidence(1) benign(0.008) TCGA-FR-A726-01 5 135286995 135286995 G A LECT2 Missense_Mutation p.P69L 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 135287073 135287073 G A LECT2 Intron 0.32 TCGA-FR-A726-01 5 135379792 135379792 G A TGFBI Silent p.G93G 0.28 TCGA-FR-A726-01 5 135551900 135551900 C T TRPC7 Missense_Mutation p.E803K 0.33 tolerated(0.2) possibly_damaging(0.573) TCGA-FR-A726-01 5 135567151 135567151 A G TRPC7 Missense_Mutation p.F644S 0.21 deleterious(0) possibly_damaging(0.823) TCGA-FR-A726-01 5 135601998 135601998 C T TRPC7 Missense_Mutation p.E419K 0.34 tolerated(0.83) benign(0.075) TCGA-FR-A726-01 5 135692334 135692334 C T TRPC7 Missense_Mutation p.E248K 0.35 deleterious(0) possibly_damaging(0.858) TCGA-FR-A726-01 5 137056200 137056200 G A KLHL3 Missense_Mutation p.P30S 0.31 tolerated(0.52) benign(0.003) TCGA-FR-A726-01 5 13717505 13717505 G A DNAH5 Silent p.I4208I 0.46 TCGA-FR-A726-01 5 137323990 137323990 G A FAM13B Missense_Mutation p.P288L 0.35 deleterious(0.01) benign(0.158) TCGA-FR-A726-01 5 137488222 137488222 C T BRD8 Silent p.Q935Q 0.37 TCGA-FR-A726-01 5 137504316 137504316 A T BRD8 Intron 0.10 TCGA-FR-A726-01 5 13752242 13752242 C T DNAH5 Splice_Site p.X3676_splice 0.50 TCGA-FR-A726-01 5 13752243 13752243 C T DNAH5 Silent p.K3676K 0.47 TCGA-FR-A726-01 5 137588685 137588685 G A GFRA3 Missense_Mutation p.P392L 0.32 tolerated_low_confidence(0.28) unknown(0) TCGA-FR-A726-01 5 137627784 137627784 G A CDC25C Missense_Mutation p.R213C 0.27 deleterious(0) possibly_damaging(0.908) TCGA-FR-A726-01 5 13766085 13766085 C T DNAH5 Silent p.Q3367Q 0.11 TCGA-FR-A726-01 5 137781506 137781506 C T REEP2 3'UTR 0.33 TCGA-FR-A726-01 5 13793748 13793748 G A DNAH5 Silent p.I2700I 0.53 TCGA-FR-A726-01 5 13841240 13841240 C T DNAH5 Splice_Site p.X1829_splice 0.36 TCGA-FR-A726-01 5 138614506 138614506 C T SNORA74A RNA 0.33 TCGA-FR-A726-01 5 13871769 13871769 C T DNAH5 Missense_Mutation p.E1168K 0.64 benign(0.292) TCGA-FR-A726-01 5 138725399 138725399 G A MZB1 Silent p.R49R 0.32 TCGA-FR-A726-01 5 138764329 138764329 G A DNAJC18 Nonsense_Mutation p.R91* 0.65 TCGA-FR-A726-01 5 13882852 13882852 C T DNAH5 Missense_Mutation p.E1083K 0.64 benign(0.182) TCGA-FR-A726-01 5 139742612 139742612 G A SLC4A9 Missense_Mutation p.R332Q 0.31 deleterious(0.02) benign(0.201) TCGA-FR-A726-01 5 139747388 139747388 C T SLC4A9 Silent p.V777V 0.09 TCGA-FR-A726-01 5 139908692 139908692 C T ANKHD1 Missense_Mutation p.S2054F 0.30 probably_damaging(0.941) TCGA-FR-A726-01 5 139941387 139941387 G A APBB3 Intron 0.36 TCGA-FR-A726-01 5 140012367 140012367 G A CD14 Missense_Mutation p.P68S 0.27 tolerated(0.42) benign(0.05) TCGA-FR-A726-01 5 140175447 140175447 G A PCDHA2 Missense_Mutation p.G300R 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FR-A726-01 5 140176983 140176983 A G PCDHA2 Intron 0.31 TCGA-FR-A726-01 5 140182282 140182282 G A PCDHA3 Silent p.G500G 0.37 TCGA-FR-A726-01 5 140182605 140182605 C T PCDHA3 Missense_Mutation p.S608L 0.25 tolerated_low_confidence(0.05) benign(0.358) TCGA-FR-A726-01 5 140182697 140182697 G A PCDHA3 Missense_Mutation p.E639K 0.08 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-FR-A726-01 5 140184738 140184738 C T PCDHA2 Intron 0.36 TCGA-FR-A726-01 5 140186681 140186681 G A PCDHA4 5'Flank 0.38 TCGA-FR-A726-01 5 140189081 140189081 T C PCDHA4 Missense_Mutation p.M770T 0.25 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-FR-A726-01 5 140202016 140202016 C T PCDHA5 Missense_Mutation p.P219L 0.32 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FR-A726-01 5 140203655 140203655 A C PCDHA5 Missense_Mutation p.K765N 0.26 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FR-A726-01 5 140203682 140203682 C T PCDHA5 Silent p.S774S 0.41 TCGA-FR-A726-01 5 140207752 140207752 G A PCDHA6 Missense_Mutation p.V26M 0.42 tolerated_low_confidence(0.1) benign(0.014) TCGA-FR-A726-01 5 140207820 140207820 C T PCDHA6 Silent p.I48I 0.35 TCGA-FR-A726-01 5 140208965 140208965 G A PCDHA6 Missense_Mutation p.G430E 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.613) TCGA-FR-A726-01 5 140209177 140209177 G A PCDHA6 Missense_Mutation p.E501K 0.29 deleterious_low_confidence(0.01) benign(0.396) TCGA-FR-A726-01 5 140210043 140210043 G A PCDHA6 Silent p.Q789Q 0.35 TCGA-FR-A726-01 5 140214053 140214053 G A PCDHA7 Missense_Mutation p.G29S 0.42 tolerated_low_confidence(0.06) benign(0.321) TCGA-FR-A726-01 5 140221502 140221502 C T PCDHA8 Missense_Mutation p.S199F 0.30 tolerated_low_confidence(0.7) benign(0.012) TCGA-FR-A726-01 5 140221796 140221796 G A PCDHA8 Missense_Mutation p.R297Q 0.35 tolerated_low_confidence(0.11) benign(0) TCGA-FR-A726-01 5 140223238 140223238 C T PCDHA8 Missense_Mutation p.P778S 0.28 deleterious_low_confidence(0.04) benign(0.184) TCGA-FR-A726-01 5 140230148 140230148 G A PCDHA9 Missense_Mutation p.E690K 0.11 tolerated_low_confidence(0.09) benign(0.2) TCGA-FR-A726-01 5 140236635 140236635 G A PCDHA10 Silent p.T334T 0.27 TCGA-FR-A726-01 5 140242137 140242137 A G AC005609.1 3'UTR 0.25 TCGA-FR-A726-01 5 140250596 140250596 G A PCDHA11 Silent p.L636L 0.16 TCGA-FR-A726-01 5 140255991 140255991 G A PCDHA12 Missense_Mutation p.E312K 0.30 tolerated_low_confidence(0.21) benign(0.127) TCGA-FR-A726-01 5 140256141 140256141 G A PCDHA12 Missense_Mutation p.D362N 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.694) TCGA-FR-A726-01 5 140307836 140307836 C T PCDHAC1 Silent p.F453F 0.28 TCGA-FR-A726-01 5 140307843 140307843 G A PCDHAC1 Missense_Mutation p.E456K 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-FR-A726-01 5 140308283 140308283 G A PCDHAC1 Silent p.R602R 0.31 TCGA-FR-A726-01 5 140308567 140308567 G A PCDHAC1 Missense_Mutation p.G697E 0.30 tolerated(0.21) benign(0.131) TCGA-FR-A726-01 5 140348586 140348586 C T PCDHAC2 Silent p.F745F 0.29 TCGA-FR-A726-01 5 140432608 140432608 G A PCDHB1 Missense_Mutation p.R518K 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-FR-A726-01 5 140433321 140433321 G A PCDHB1 Missense_Mutation p.E756K 0.26 deleterious(0.01) benign(0.171) TCGA-FR-A726-01 5 140475133 140475133 C T PCDHB2 Silent p.I253I 0.34 TCGA-FR-A726-01 5 140475556 140475556 C T PCDHB2 Silent p.F394F 0.26 TCGA-FR-A726-01 5 140481027 140481027 C T PCDHB3 Missense_Mutation p.S265L 0.32 tolerated_low_confidence(0.06) benign(0.058) TCGA-FR-A726-01 5 140502961 140502961 G A PCDHB4 Missense_Mutation p.E461K 0.06 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-FR-A726-01 5 140503921 140503921 G A PCDHB4 Missense_Mutation p.E781K 0.32 tolerated_low_confidence(0.18) benign(0.005) TCGA-FR-A726-01 5 140516137 140516137 C T PCDHB5 Missense_Mutation p.S374F 0.30 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-FR-A726-01 5 140517365 140517365 G A PCDHB5 Silent p.G783G 0.28 TCGA-FR-A726-01 5 140529808 140529808 G A PCDHB6 5'Flank 0.30 TCGA-FR-A726-01 5 140532154 140532154 C T PCDHB6 Silent p.F772F 0.29 TCGA-FR-A726-01 5 140552569 140552569 C T PCDHB7 Silent p.D51D 0.24 TCGA-FR-A726-01 5 140552978 140552978 G A PCDHB7 Missense_Mutation p.G188R 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.456) TCGA-FR-A726-01 5 140554503 140554503 C T PCDHB7 Missense_Mutation p.S696F 0.19 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FR-A726-01 5 140554723 140554723 C T PCDHB7 Silent p.I769I 0.18 TCGA-FR-A726-01 5 140559742 140559742 C T PCDHB8 Silent p.F709F 0.34 TCGA-FR-A726-01 5 140572463 140572463 C T PCDHB10 Missense_Mutation p.P113L 0.25 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-FR-A726-01 5 140572687 140572687 G A PCDHB10 Missense_Mutation p.G188S 0.26 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-FR-A726-01 5 140580724 140580724 C T PCDHB11 Silent p.F459F 0.31 TCGA-FR-A726-01 5 140589763 140589763 C A PCDHB12 Silent p.T428T 0.25 TCGA-FR-A726-01 5 140594016 140594016 C T PCDHB13 Silent p.F107F 0.22 TCGA-FR-A726-01 5 140603530 140603530 C T PCDHB14 Silent p.T151T 0.33 TCGA-FR-A726-01 5 140604253 140604253 C T PCDHB14 Silent p.F392F 0.26 TCGA-FR-A726-01 5 140605469 140605469 C T PCDHB14 Nonsense_Mutation p.Q798* 0.29 TCGA-FR-A726-01 5 140683478 140683478 C T SLC25A2 5'UTR 0.21 TCGA-FR-A726-01 5 140710288 140710288 C T PCDHGA1 Silent p.L13L 0.39 TCGA-FR-A726-01 5 140710476 140710476 C T PCDHGA1 Silent p.F75F 0.33 TCGA-FR-A726-01 5 140720094 140720094 C T PCDHGA2 Missense_Mutation p.S519F 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A726-01 5 140720095 140720095 C T PCDHGA2 Silent p.S519S 0.30 TCGA-FR-A726-01 5 140725302 140725302 C T PCDHGA3 Missense_Mutation p.P568S 0.32 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-FR-A726-01 5 140731246 140731246 C T PCDHGB1 Silent p.S473S 0.31 TCGA-FR-A726-01 5 140734917 140734917 G A PCDHGA4 Silent p.K50K 0.23 TCGA-FR-A726-01 5 140734918 140734918 G A PCDHGA4 Missense_Mutation p.D51N 0.23 deleterious_low_confidence(0.01) benign(0.443) TCGA-FR-A726-01 5 140734971 140734971 C T PCDHGA4 Silent p.S68S 0.28 TCGA-FR-A726-01 5 140736284 140736284 C T PCDHGA4 Missense_Mutation p.S506F 0.29 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FR-A726-01 5 140737153 140737153 G A PCDHGA4 Missense_Mutation p.D796N 0.27 deleterious_low_confidence(0.03) benign(0.019) TCGA-FR-A726-01 5 140749960 140749960 G A PCDHGB3 5'UTR 0.26 TCGA-FR-A726-01 5 140752136 140752136 C T PCDHGB3 Silent p.G725G 0.29 TCGA-FR-A726-01 5 140754129 140754129 C T PCDHGA6 Missense_Mutation p.P160L 0.41 tolerated_low_confidence(0.21) benign(0.042) TCGA-FR-A726-01 5 140755021 140755021 C T PCDHGA6 Silent p.Y457Y 0.05 TCGA-FR-A726-01 5 140768842 140768842 C T PCDHGB4 Missense_Mutation p.P464L 0.34 tolerated(0.1) benign(0.179) TCGA-FR-A726-01 5 140773316 140773316 T C PCDHGA8 Silent p.C312C 0.37 TCGA-FR-A726-01 5 140774643 140774643 C T PCDHGA8 Nonsense_Mutation p.Q755* 0.22 TCGA-FR-A726-01 5 140782547 140782547 C T PCDHGA9 Missense_Mutation p.R10C 0.45 tolerated_low_confidence(0.39) benign(0.001) TCGA-FR-A726-01 5 140789951 140789951 C T PCDHGB6 Missense_Mutation p.H728Y 0.28 tolerated(0.5) benign(0.039) TCGA-FR-A726-01 5 140803058 140803058 C T PCDHGA11 Missense_Mutation p.S755F 0.34 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FR-A726-01 5 140807201 140807201 C T PCDHGB6 Intron 0.40 TCGA-FR-A726-01 5 140812028 140812028 C T PCDHGA12 Missense_Mutation p.P568S 0.33 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-FR-A726-01 5 140812286 140812286 C A PCDHGA12 Missense_Mutation p.L654I 0.08 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FR-A726-01 5 140856889 140856889 C T PCDHGC3 Silent p.S402S 0.28 TCGA-FR-A726-01 5 141318100 141318100 G A KIAA0141 Missense_Mutation p.D442N 0.35 tolerated(0.5) benign(0.003) TCGA-FR-A726-01 5 141336442 141336442 C T PCDH12 Silent p.R325R 0.39 TCGA-FR-A726-01 5 142434007 142434007 C T ARHGAP26 Missense_Mutation p.P430L 0.20 deleterious(0.05) possibly_damaging(0.78) TCGA-FR-A726-01 5 142434008 142434008 C T ARHGAP26 Silent p.P430P 0.20 TCGA-FR-A726-01 5 143578 143578 G A PLEKHG4B Missense_Mutation p.E235K 0.40 deleterious(0.04) probably_damaging(0.917) TCGA-FR-A726-01 5 143586273 143586273 G A KCTD16 5'UTR 0.45 TCGA-FR-A726-01 5 143586588 143586588 G A KCTD16 Missense_Mutation p.G104E 0.36 tolerated(0.68) probably_damaging(1) TCGA-FR-A726-01 5 143853389 143853389 G A KCTD16 Silent p.V333V 0.09 TCGA-FR-A726-01 5 145144502 145144502 C T PRELID2 3'UTR 0.44 TCGA-FR-A726-01 5 145252341 145252341 A T GRXCR2 Missense_Mutation p.V64D 0.29 tolerated(0.16) possibly_damaging(0.886) TCGA-FR-A726-01 5 145252393 145252393 C T GRXCR2 Missense_Mutation p.E47K 0.26 tolerated(0.57) possibly_damaging(0.447) TCGA-FR-A726-01 5 145252394 145252394 C T GRXCR2 Silent p.K46K 0.26 TCGA-FR-A726-01 5 145435619 145435619 C T SH3RF2 Silent p.S466S 0.33 TCGA-FR-A726-01 5 146077708 146077708 C T PPP2R2B Splice_Site p.X60_splice 0.36 TCGA-FR-A726-01 5 146754674 146754674 C T STK32A Missense_Mutation p.P309S 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 147011072 147011072 C T JAKMIP2 Silent p.E593E 0.35 TCGA-FR-A726-01 5 147040721 147040721 C T JAKMIP2 Silent p.E139E 0.30 TCGA-FR-A726-01 5 147261675 147261675 G A SCGB3A2 3'UTR 0.33 TCGA-FR-A726-01 5 147451760 147451760 C T SPINK5 Missense_Mutation p.P87S 0.33 tolerated(0.3) benign(0.001) TCGA-FR-A726-01 5 147481373 147481373 G A SPINK5 Silent p.R444R 0.37 TCGA-FR-A726-01 5 147499644 147499644 C T SPINK5 Missense_Mutation p.R796W 0.38 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 14751247 14751247 G A ANKH Silent p.T206T 0.36 TCGA-FR-A726-01 5 147549306 147549306 C T SPINK14 Missense_Mutation p.S4F 0.29 tolerated(1) benign(0) TCGA-FR-A726-01 5 14769226 14769226 G A ANKH Silent p.S57S 0.51 TCGA-FR-A726-01 5 147695387 147695387 G A SPINK7 3'UTR 0.55 TCGA-FR-A726-01 5 147715223 147715223 C T SPINK9 Missense_Mutation p.T16I 0.22 tolerated(0.37) benign(0.256) TCGA-FR-A726-01 5 147928263 147928263 C T HTR4 Silent p.S107S 0.42 TCGA-FR-A726-01 5 148388511 148388511 C T SH3TC2 Silent p.R1127R 0.27 TCGA-FR-A726-01 5 148700009 148700009 C T AFAP1L1 Missense_Mutation p.P561S 0.13 tolerated(0.08) possibly_damaging(0.607) TCGA-FR-A726-01 5 148702175 148702175 G A AFAP1L1 Missense_Mutation p.E569K 0.40 tolerated(0.37) benign(0.005) TCGA-FR-A726-01 5 148808497 148808497 C T MIR143 RNA 0.33 TCGA-FR-A726-01 5 149213244 149213244 C T PPARGC1B Silent p.L536L 0.23 TCGA-FR-A726-01 5 149459700 149459700 G A CSF1R Silent p.F169F 0.31 TCGA-FR-A726-01 5 149497189 149497189 G A PDGFRB Silent p.S1043S 0.26 TCGA-FR-A726-01 5 149499032 149499032 C T PDGFRB Silent p.E932E 0.20 TCGA-FR-A726-01 5 149510137 149510137 C T PDGFRB Silent p.P444P 0.37 TCGA-FR-A726-01 5 149771142 149771142 C T TCOF1 Silent p.T1073T 0.25 TCGA-FR-A726-01 5 149772311 149772311 C T TCOF1 Silent p.T1186T 0.09 TCGA-FR-A726-01 5 149823899 149823899 G A RPS14 Missense_Mutation p.P136S 0.42 deleterious(0.04) possibly_damaging(0.475) TCGA-FR-A726-01 5 150276164 150276164 C T ZNF300 Missense_Mutation p.D229N 0.36 tolerated(0.17) benign(0.025) TCGA-FR-A726-01 5 150278072 150278072 C T ZNF300 Silent p.E36E 0.33 TCGA-FR-A726-01 5 150407685 150407685 G A GPX3 Silent p.R225R 0.62 TCGA-FR-A726-01 5 150646406 150646406 C T GM2A Missense_Mutation p.P120S 0.29 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 5 150847332 150847332 C T SLC36A1 Missense_Mutation p.P190L 0.31 tolerated(0.09) benign(0.367) TCGA-FR-A726-01 5 150886966 150886966 C T FAT2 Missense_Mutation p.R4089K 0.36 benign(0.007) TCGA-FR-A726-01 5 150889680 150889680 C T FAT2 Silent p.R3987R 0.33 TCGA-FR-A726-01 5 151235902 151235902 G A GLRA1 Silent p.F173F 0.32 TCGA-FR-A726-01 5 151304115 151304115 C T GLRA1 5'UTR 0.23 TCGA-FR-A726-01 5 151771905 151771905 G A NMUR2 Silent p.F365F 0.31 TCGA-FR-A726-01 5 153035400 153035400 G A GRIA1 Missense_Mutation p.G233S 0.33 tolerated(0.75) benign(0.092) TCGA-FR-A726-01 5 153144132 153144132 G A GRIA1 Silent p.A664A 0.21 TCGA-FR-A726-01 5 154251339 154251339 C T CNOT8 Missense_Mutation p.P175S 0.36 deleterious(0.01) probably_damaging(0.913) TCGA-FR-A726-01 5 154291379 154291379 G A GEMIN5 Missense_Mutation p.P692L 0.36 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 5 154393273 154393273 C T KIF4B 5'UTR 0.23 TCGA-FR-A726-01 5 154394730 154394730 C T KIF4B Silent p.L437L 0.36 TCGA-FR-A726-01 5 154397041 154397041 C T KIF4B Missense_Mutation p.P1208S 0.36 tolerated_low_confidence(0.56) benign(0.007) TCGA-FR-A726-01 5 155548 155548 G A PLEKHG4B Missense_Mutation p.R377K 0.29 tolerated(0.6) benign(0.002) TCGA-FR-A726-01 5 156381609 156381609 C T TIMD4 Missense_Mutation p.G73R 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 156482224 156482224 C T HAVCR1 Missense_Mutation p.E123K 0.28 tolerated(0.22) benign(0.173) TCGA-FR-A726-01 5 156607932 156607932 C T ITK 5'UTR 0.32 TCGA-FR-A726-01 5 156659399 156659399 G A ITK Missense_Mutation p.D255N 0.35 tolerated(0.16) benign(0.004) TCGA-FR-A726-01 5 156675952 156675952 C T ITK Missense_Mutation p.R576W 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 156679848 156679848 C T ITK 3'UTR 0.25 TCGA-FR-A726-01 5 156742004 156742004 G A CYFIP2 Missense_Mutation p.D394N 0.38 tolerated(0.26) possibly_damaging(0.517) TCGA-FR-A726-01 5 156768086 156768086 G A CYFIP2 Missense_Mutation p.R839Q 0.38 deleterious(0.05) possibly_damaging(0.507) TCGA-FR-A726-01 5 156768152 156768152 T G CYFIP2 Missense_Mutation p.L861R 0.30 tolerated(0.11) benign(0.236) TCGA-FR-A726-01 5 156786060 156786060 C T CYFIP2 Silent p.F881F 0.05 TCGA-FR-A726-01 5 156788579 156788579 C T CYFIP2 Silent p.L978L 0.34 TCGA-FR-A726-01 5 156890105 156890105 C T NIPAL4 Missense_Mutation p.S76F 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A726-01 5 156895739 156895739 G A NIPAL4 Missense_Mutation p.G177E 0.35 deleterious(0) possibly_damaging(0.885) TCGA-FR-A726-01 5 156899412 156899412 G A NIPAL4 Missense_Mutation p.G282E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 156946855 156946855 G A ADAM19 Missense_Mutation p.P198S 0.28 tolerated(0.6) benign(0.022) TCGA-FR-A726-01 5 157053357 157053357 C T SOX30 Silent p.R751R 0.17 TCGA-FR-A726-01 5 157078583 157078583 C T SOX30 Silent p.L168L 0.33 TCGA-FR-A726-01 5 158747311 158747311 C T IL12B Intron 0.36 TCGA-FR-A726-01 5 15936738 15936738 C T FBXL7 Missense_Mutation p.R307C 0.38 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 159640821 159640821 G A FABP6 Missense_Mutation p.G44R 0.33 deleterious_low_confidence(0) benign(0.057) TCGA-FR-A726-01 5 159992573 159992573 C T ATP10B Missense_Mutation p.E1425K 0.09 tolerated_low_confidence(0.15) benign(0.004) TCGA-FR-A726-01 5 160059334 160059334 A G ATP10B Silent p.G474G 0.24 TCGA-FR-A726-01 5 160753459 160753459 C T GABRB2 Silent p.G369G 0.38 TCGA-FR-A726-01 5 160761799 160761799 G A GABRB2 Silent p.F264F 0.32 TCGA-FR-A726-01 5 160763772 160763772 T A GABRB2 Silent p.G182G 0.38 TCGA-FR-A726-01 5 16091136 16091136 G A MARCH11 Silent p.L250L 0.53 TCGA-FR-A726-01 5 161324692 161324692 G A GABRA1 3'UTR 0.62 TCGA-FR-A726-01 5 161324693 161324693 G A GABRA1 3'UTR 0.62 TCGA-FR-A726-01 5 161494881 161494881 G A GABRG2 5'UTR 0.42 TCGA-FR-A726-01 5 161530934 161530934 G A GABRG2 Missense_Mutation p.R264Q 0.36 deleterious(0.05) possibly_damaging(0.71) TCGA-FR-A726-01 5 161576256 161576256 C T GABRG2 Silent p.T395T 0.29 TCGA-FR-A726-01 5 161580514 161580514 T G GABRG2 3'UTR 0.20 TCGA-FR-A726-01 5 162917558 162917558 G A HMMR Missense_Mutation p.G709S 0.27 tolerated(0.11) benign(0.187) TCGA-FR-A726-01 5 162944662 162944662 C T MAT2B Silent p.P272P 0.25 TCGA-FR-A726-01 5 167182018 167182018 G A TENM2 Intron 0.24 TCGA-FR-A726-01 5 167551905 167551905 G A TENM2 Missense_Mutation p.E687K 0.38 tolerated(0.14) benign(0.056) TCGA-FR-A726-01 5 167625870 167625870 C T TENM2 Silent p.I971I 0.37 TCGA-FR-A726-01 5 167674976 167674976 C T TENM2 Silent p.T2344T 0.34 TCGA-FR-A726-01 5 167891838 167891838 G A WWC1 Silent p.Q1013Q 0.33 TCGA-FR-A726-01 5 167891839 167891839 G A WWC1 Missense_Mutation p.E1014K 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 168096932 168096932 C T SLIT3 Missense_Mutation p.G1398R 0.32 tolerated(0.49) benign(0.003) TCGA-FR-A726-01 5 168100299 168100299 C T SLIT3 Missense_Mutation p.E1242K 0.08 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 5 168151482 168151482 C T SLIT3 Missense_Mutation p.E760K 0.22 deleterious(0.02) possibly_damaging(0.673) TCGA-FR-A726-01 5 168187868 168187868 T A SLIT3 Missense_Mutation p.I562L 0.35 tolerated(0.42) probably_damaging(0.926) TCGA-FR-A726-01 5 168222515 168222515 C T SLIT3 Missense_Mutation p.R335Q 0.33 deleterious(0) probably_damaging(0.959) TCGA-FR-A726-01 5 169108789 169108789 A T DOCK2 Missense_Mutation p.N171I 0.29 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 5 169805654 169805654 G A KCNMB1 3'UTR 0.41 TCGA-FR-A726-01 5 169805857 169805857 C T KCNMB1 Missense_Mutation p.E143K 0.33 tolerated(0.09) possibly_damaging(0.823) TCGA-FR-A726-01 5 169805903 169805903 G A KCNMB1 Silent p.F127F 0.39 TCGA-FR-A726-01 5 169931613 169931613 A G KCNIP1 Missense_Mutation p.T13A 0.26 tolerated_low_confidence(0.74) benign(0.001) TCGA-FR-A726-01 5 170148880 170148880 C T KCNIP1 Silent p.T111T 0.29 TCGA-FR-A726-01 5 170239170 170239170 C T GABRP Missense_Mutation p.P411S 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-FR-A726-01 5 170239206 170239206 C T GABRP Missense_Mutation p.P423S 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 5 171295671 171295671 G A FBXW11 Missense_Mutation p.P533S 0.31 tolerated_low_confidence(0.08) benign(0.407) TCGA-FR-A726-01 5 171488198 171488198 C T STK10 Silent p.R719R 0.05 TCGA-FR-A726-01 5 172195705 172195705 C T DUSP1 3'UTR 0.30 TCGA-FR-A726-01 5 172578577 172578577 C T BNIP1 Silent p.L62L 0.24 TCGA-FR-A726-01 5 17275823 17275823 G A BASP1 Silent p.G166G 0.43 TCGA-FR-A726-01 5 173473852 173473852 G A NSG2 Missense_Mutation p.E32K 0.32 deleterious(0) possibly_damaging(0.601) TCGA-FR-A726-01 5 174869125 174869125 C A DRD1 Missense_Mutation p.L326F 0.25 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 5 174870106 174870106 C T DRD1 5'UTR 0.33 TCGA-FR-A726-01 5 175528581 175528581 G A FAM153B Missense_Mutation p.E144K 0.09 tolerated_low_confidence(0.78) benign(0.274) TCGA-FR-A726-01 5 175581995 175581995 G A RP11-844P9.2 RNA 0.23 TCGA-FR-A726-01 5 176008484 176008484 C T CDHR2 Silent p.I653I 0.10 TCGA-FR-A726-01 5 176011846 176011846 G A CDHR2 Missense_Mutation p.G855E 0.39 tolerated(0.13) benign(0.111) TCGA-FR-A726-01 5 176011847 176011847 G A CDHR2 Silent p.G855G 0.39 TCGA-FR-A726-01 5 176332220 176332220 G A UIMC1 3'UTR 0.25 TCGA-FR-A726-01 5 176395771 176395771 G A UIMC1 Missense_Mutation p.P329S 0.37 tolerated(1) benign(0.249) TCGA-FR-A726-01 5 176911120 176911120 G A PDLIM7 Silent p.I374I 0.35 TCGA-FR-A726-01 5 176931187 176931187 G A DOK3 Missense_Mutation p.P430S 0.35 tolerated(0.12) benign(0.025) TCGA-FR-A726-01 5 176951519 176951519 G A FAM193B Missense_Mutation p.P655S 0.35 tolerated(0.74) benign(0.013) TCGA-FR-A726-01 5 177059694 177059694 G A RP11-1277A3.2 Intron 0.25 TCGA-FR-A726-01 5 177171931 177171931 G A FAM153A Silent p.L22L 0.16 TCGA-FR-A726-01 5 177422891 177422891 C G PROP1 Missense_Mutation p.G15A 0.35 tolerated_low_confidence(0.06) possibly_damaging(0.772) TCGA-FR-A726-01 5 177690279 177690279 C T COL23A1 Missense_Mutation p.G190E 0.38 deleterious(0) unknown(0) TCGA-FR-A726-01 5 177690307 177690307 C T COL23A1 Missense_Mutation p.G181R 0.22 deleterious(0) unknown(0) TCGA-FR-A726-01 5 178339626 178339626 C T ZFP2 5'UTR 0.22 TCGA-FR-A726-01 5 178358768 178358768 C T ZFP2 Missense_Mutation p.H152Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 178460213 178460213 C T ZNF879 Missense_Mutation p.H422Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 178505970 178505970 G A ZNF354C Silent p.Q179Q 0.31 TCGA-FR-A726-01 5 178581122 178581122 G A ADAMTS2 Missense_Mutation p.P437L 0.21 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 5 179296779 179296779 G A TBC1D9B Silent p.H927H 0.31 TCGA-FR-A726-01 5 179305320 179305320 C T TBC1D9B Missense_Mutation p.G591S 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 179555583 179555583 G A RASGEF1C Silent p.L156L 0.21 TCGA-FR-A726-01 5 180047255 180047255 C T FLT4 Silent p.G820G 0.23 TCGA-FR-A726-01 5 180047694 180047694 A T FLT4 Missense_Mutation p.M774K 0.26 deleterious(0) benign(0.104) TCGA-FR-A726-01 5 180048882 180048882 G A FLT4 Silent p.I560I 0.26 TCGA-FR-A726-01 5 180057760 180057760 C T FLT4 Silent p.Q65Q 0.36 TCGA-FR-A726-01 5 180326278 180326278 C T BTNL8 5'UTR 0.36 TCGA-FR-A726-01 5 180472567 180472567 C T BTNL9 Silent p.L26L 0.41 TCGA-FR-A726-01 5 180475255 180475255 G A BTNL9 Nonsense_Mutation p.W146* 0.28 TCGA-FR-A726-01 5 180582653 180582653 G A OR2V2 Silent p.K237K 0.34 TCGA-FR-A726-01 5 180582805 180582805 C T OR2V2 Missense_Mutation p.P288L 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 5 180582806 180582806 C T OR2V2 Silent p.P288P 0.28 TCGA-FR-A726-01 5 180622229 180622229 C T TRIM7 Silent p.Q491Q 0.31 TCGA-FR-A726-01 5 180622312 180622312 C T TRIM7 Missense_Mutation p.A464T 0.29 tolerated(0.33) probably_damaging(0.974) TCGA-FR-A726-01 5 180630571 180630571 C T TRIM7 Missense_Mutation p.E198K 0.11 tolerated(0.28) possibly_damaging(0.872) TCGA-FR-A726-01 5 19473568 19473568 C T CDH18 Missense_Mutation p.E714K 0.31 tolerated(0.11) benign(0.016) TCGA-FR-A726-01 5 19591301 19591301 C T CDH18 Silent p.G288G 0.34 TCGA-FR-A726-01 5 19612666 19612666 C T CDH18 Missense_Mutation p.E230K 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A726-01 5 21760714 21760714 G A CDH12 Missense_Mutation p.S529L 0.62 tolerated(0.09) benign(0.013) TCGA-FR-A726-01 5 21765100 21765100 G A CDH12 Missense_Mutation p.A501V 0.57 tolerated(0.05) possibly_damaging(0.63) TCGA-FR-A726-01 5 23522800 23522800 G A PRDM9 Missense_Mutation p.V230M 0.55 tolerated(0.16) possibly_damaging(0.756) TCGA-FR-A726-01 5 23523411 23523411 G A PRDM9 Silent p.G298G 0.47 TCGA-FR-A726-01 5 24487685 24487685 A T CDH10 3'UTR 0.76 TCGA-FR-A726-01 5 24488123 24488123 G A CDH10 Silent p.I672I 0.58 TCGA-FR-A726-01 5 24498624 24498624 A T CDH10 Missense_Mutation p.N466K 0.32 deleterious(0.03) probably_damaging(0.988) TCGA-FR-A726-01 5 24509862 24509862 G A CDH10 Missense_Mutation p.P357S 0.49 tolerated(0.13) probably_damaging(0.979) TCGA-FR-A726-01 5 24535831 24535831 G A CDH10 Silent p.F209F 0.49 TCGA-FR-A726-01 5 26988375 26988375 G A CDH9 Silent p.I22I 0.53 TCGA-FR-A726-01 5 31294270 31294270 G A CDH6 Missense_Mutation p.E144K 0.34 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 5 31305356 31305356 C T CDH6 Missense_Mutation p.L359F 0.27 tolerated(0.19) possibly_damaging(0.859) TCGA-FR-A726-01 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.41 tolerated(0.31) possibly_damaging(0.72) TCGA-FR-A726-01 5 31318006 31318006 C T CDH6 Silent p.I619I 0.40 TCGA-FR-A726-01 5 31323152 31323152 C T CDH6 Missense_Mutation p.P704S 0.39 tolerated(0.22) benign(0.175) TCGA-FR-A726-01 5 31421459 31421459 G A DROSHA Silent p.L1149L 0.06 TCGA-FR-A726-01 5 31799282 31799282 G A PDZD2 5'UTR 0.38 TCGA-FR-A726-01 5 31799831 31799831 G A PDZD2 Missense_Mutation p.S159N 0.28 deleterious(0) possibly_damaging(0.697) TCGA-FR-A726-01 5 31983414 31983414 G A PDZD2 Silent p.A210A 0.35 TCGA-FR-A726-01 5 32052775 32052775 C T PDZD2 Missense_Mutation p.P575L 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 32387754 32387754 G A ZFR Silent p.L800L 0.31 TCGA-FR-A726-01 5 33576850 33576850 G A ADAMTS12 Missense_Mutation p.S1094F 0.36 tolerated(0.07) possibly_damaging(0.472) TCGA-FR-A726-01 5 33588902 33588902 C T ADAMTS12 Silent p.G889G 0.28 TCGA-FR-A726-01 5 34823889 34823889 C T RAI14 Silent p.L651L 0.28 TCGA-FR-A726-01 5 35047935 35047935 G A AGXT2 Silent p.I21I 0.28 TCGA-FR-A726-01 5 35065908 35065908 C T PRLR Silent p.E384E 0.23 TCGA-FR-A726-01 5 35066046 35066046 C T PRLR Missense_Mutation p.M338I 0.29 tolerated(0.29) benign(0.003) TCGA-FR-A726-01 5 35727789 35727789 G A SPEF2 Missense_Mutation p.G976E 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A726-01 5 35774090 35774090 A G SPEF2 Missense_Mutation p.K1349E 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A726-01 5 35807308 35807308 C T SPEF2 Missense_Mutation p.P1778S 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A726-01 5 35814565 35814565 G A SPEF2 Splice_Site p.X1794_splice 0.23 TCGA-FR-A726-01 5 35857027 35857027 C T IL7R 5'UTR 0.23 TCGA-FR-A726-01 5 35875614 35875614 G A IL7R Silent p.R267R 0.18 TCGA-FR-A726-01 5 35876102 35876102 C T IL7R Silent p.F298F 0.21 TCGA-FR-A726-01 5 35876381 35876381 G A IL7R Silent p.R391R 0.31 TCGA-FR-A726-01 5 35876528 35876528 C T IL7R Silent p.S440S 0.28 TCGA-FR-A726-01 5 35876529 35876529 C T IL7R Silent p.L441L 0.29 TCGA-FR-A726-01 5 35876656 35876656 C T IL7R 3'UTR 0.34 TCGA-FR-A726-01 5 35904633 35904633 C T CAPSL 3'UTR 0.21 TCGA-FR-A726-01 5 35904666 35904666 C T CAPSL Missense_Mutation p.R203K 0.25 tolerated(0.28) benign(0.007) TCGA-FR-A726-01 5 35910488 35910488 C T CAPSL Missense_Mutation p.E99K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 35957307 35957307 G A UGT3A1 Missense_Mutation p.P353L 0.24 deleterious(0) probably_damaging(0.969) TCGA-FR-A726-01 5 35957388 35957388 C T UGT3A1 Missense_Mutation p.G326E 0.20 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 5 35965769 35965769 G A UGT3A1 Missense_Mutation p.P188S 0.17 tolerated(0.41) benign(0) TCGA-FR-A726-01 5 35968201 35968201 G A UGT3A1 Silent p.I77I 0.25 TCGA-FR-A726-01 5 36035845 36035845 C T UGT3A2 Missense_Mutation p.M509I 0.25 tolerated(0.16) benign(0.004) TCGA-FR-A726-01 5 36049314 36049314 C T UGT3A2 Missense_Mutation p.E174K 0.27 tolerated(0.06) benign(0.21) TCGA-FR-A726-01 5 36143317 36143317 G A LMBRD2 Silent p.C45C 0.20 TCGA-FR-A726-01 5 36168466 36168466 C T SKP2 Silent p.S196S 0.25 TCGA-FR-A726-01 5 36182008 36182008 C T SKP2 Missense_Mutation p.P384S 0.23 deleterious(0) possibly_damaging(0.726) TCGA-FR-A726-01 5 36271372 36271372 C T RANBP3L Missense_Mutation p.G45R 0.30 tolerated(1) benign(0.001) TCGA-FR-A726-01 5 36301604 36301604 C T RANBP3L 5'UTR 0.23 TCGA-FR-A726-01 5 36671299 36671299 G A SLC1A3 Missense_Mutation p.R163Q 0.28 tolerated(0.64) benign(0) TCGA-FR-A726-01 5 36985422 36985422 C T NIPBL Missense_Mutation p.P714S 0.17 tolerated_low_confidence(0.41) benign(0.003) TCGA-FR-A726-01 5 36986159 36986159 G A NIPBL Silent p.P959P 0.25 TCGA-FR-A726-01 5 37002781 37002781 C T NIPBL Missense_Mutation p.P1228S 0.23 tolerated(0.06) probably_damaging(0.982) TCGA-FR-A726-01 5 37164380 37164380 G A C5orf42 Missense_Mutation p.P2528L 0.14 tolerated(0.06) benign(0.204) TCGA-FR-A726-01 5 38258850 38258850 C T EGFLAM 5'UTR 0.18 TCGA-FR-A726-01 5 38350618 38350618 G A EGFLAM Missense_Mutation p.D103N 0.20 tolerated_low_confidence(0.5) benign(0.012) TCGA-FR-A726-01 5 38406956 38406956 A C EGFLAM Silent p.G285G 0.17 TCGA-FR-A726-01 5 38418287 38418287 C T EGFLAM Silent p.L538L 0.18 TCGA-FR-A726-01 5 38427202 38427202 C T EGFLAM Silent p.F634F 0.20 TCGA-FR-A726-01 5 38435241 38435241 A C EGFLAM Silent p.G723G 0.05 TCGA-FR-A726-01 5 38458458 38458458 C T EGFLAM Silent p.S919S 0.16 TCGA-FR-A726-01 5 38482167 38482167 C T LIFR Missense_Mutation p.E942K 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-FR-A726-01 5 38486043 38486043 G A LIFR Missense_Mutation p.S792F 0.18 deleterious(0) possibly_damaging(0.736) TCGA-FR-A726-01 5 38490298 38490298 C T LIFR Missense_Mutation p.E721K 0.17 deleterious(0) probably_damaging(0.917) TCGA-FR-A726-01 5 38493762 38493762 G A LIFR Missense_Mutation p.L671F 0.12 tolerated(0.71) benign(0.022) TCGA-FR-A726-01 5 38504209 38504209 G A LIFR Missense_Mutation p.P436S 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 38506693 38506693 C T LIFR Missense_Mutation p.D345N 0.62 tolerated(0.5) benign(0.011) TCGA-FR-A726-01 5 38510674 38510674 C T LIFR Missense_Mutation p.E295K 0.19 tolerated(0.48) benign(0.002) TCGA-FR-A726-01 5 38876460 38876460 C T OSMR Silent p.S77S 0.13 TCGA-FR-A726-01 5 38884169 38884169 G A OSMR Missense_Mutation p.G220E 0.16 tolerated(0.27) benign(0.011) TCGA-FR-A726-01 5 38917696 38917696 G A OSMR Missense_Mutation p.G445E 0.11 tolerated(0.13) benign(0.209) TCGA-FR-A726-01 5 38925348 38925348 A C OSMR Missense_Mutation p.E696A 0.12 deleterious(0.01) benign(0.05) TCGA-FR-A726-01 5 38944555 38944555 G A RICTOR Missense_Mutation p.L1636F 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 38962433 38962433 C T RICTOR Missense_Mutation p.D567N 0.06 deleterious(0) probably_damaging(0.928) TCGA-FR-A726-01 5 39141230 39141230 C T FYB Missense_Mutation p.E446K 0.15 deleterious(0) possibly_damaging(0.51) TCGA-FR-A726-01 5 39202290 39202290 G A FYB Missense_Mutation p.P268L 0.14 tolerated(0.17) possibly_damaging(0.662) TCGA-FR-A726-01 5 39315936 39315936 G A C9 Missense_Mutation p.R271W 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-FR-A726-01 5 39341330 39341330 C T C9 Missense_Mutation p.D132N 0.13 tolerated(0.05) benign(0.364) TCGA-FR-A726-01 5 39341338 39341338 G A C9 Missense_Mutation p.S129L 0.11 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 5 40835322 40835322 G A RPL37 5'UTR 0.10 TCGA-FR-A726-01 5 40852401 40852401 G A CARD6 Missense_Mutation p.G323R 0.25 tolerated(0.06) benign(0.02) TCGA-FR-A726-01 5 40852427 40852427 G A CARD6 Missense_Mutation p.M331I 0.20 tolerated(0.07) benign(0.058) TCGA-FR-A726-01 5 40853541 40853541 C T CARD6 Nonsense_Mutation p.Q703* 0.26 TCGA-FR-A726-01 5 40934527 40934527 C T C7 Missense_Mutation p.P80L 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 40936581 40936581 G A C7 Missense_Mutation p.G141E 0.19 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 5 40947713 40947713 C T C7 Silent p.L250L 0.34 TCGA-FR-A726-01 5 40959706 40959706 G A C7 Missense_Mutation p.E549K 0.31 deleterious(0.01) possibly_damaging(0.517) TCGA-FR-A726-01 5 40964861 40964861 C T C7 Missense_Mutation p.P590S 0.24 tolerated(0.15) probably_damaging(0.968) TCGA-FR-A726-01 5 40981670 40981670 C T C7 Nonsense_Mutation p.Q843* 0.21 TCGA-FR-A726-01 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.38 deleterious(0.03) probably_damaging(0.944) TCGA-FR-A726-01 5 41004483 41004483 C T MROH2B Missense_Mutation p.E1387K 0.25 deleterious(0.04) benign(0.311) TCGA-FR-A726-01 5 41015500 41015500 A C MROH2B Missense_Mutation p.S989A 0.21 tolerated(0.45) benign(0.108) TCGA-FR-A726-01 5 41047850 41047850 G A MROH2B Silent p.T567T 0.35 TCGA-FR-A726-01 5 41051181 41051181 C T MROH2B Silent p.V414V 0.19 TCGA-FR-A726-01 5 41057410 41057410 C T MROH2B Missense_Mutation p.R270K 0.26 tolerated(0.58) benign(0.001) TCGA-FR-A726-01 5 41143099 41143099 G A C6 Missense_Mutation p.S878F 0.30 deleterious(0.01) benign(0.08) TCGA-FR-A726-01 5 41149355 41149355 C T C6 Missense_Mutation p.E871K 0.22 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 5 41153918 41153918 C T C6 Missense_Mutation p.E762K 0.21 tolerated(0.24) benign(0.017) TCGA-FR-A726-01 5 41160278 41160278 C T C6 Silent p.E550E 0.28 TCGA-FR-A726-01 5 41160292 41160292 C T C6 Missense_Mutation p.G546S 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A726-01 5 41176678 41176678 C T C6 Missense_Mutation p.R356Q 0.19 tolerated(0.17) benign(0.316) TCGA-FR-A726-01 5 41176708 41176708 G A C6 Missense_Mutation p.P346L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 41201788 41201788 C T C6 Missense_Mutation p.E58K 0.26 tolerated(1) benign(0.003) TCGA-FR-A726-01 5 41313684 41313684 C T PLCXD3 3'UTR 0.20 TCGA-FR-A726-01 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.23 TCGA-FR-A726-01 5 41382463 41382463 G A PLCXD3 Missense_Mutation p.R93C 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 41382524 41382524 G A PLCXD3 Silent p.L72L 0.25 TCGA-FR-A726-01 5 41510699 41510699 C T PLCXD3 5'UTR 0.24 TCGA-FR-A726-01 5 41870438 41870438 G A OXCT1 Missense_Mutation p.S8F 0.15 deleterious(0.03) benign(0.001) TCGA-FR-A726-01 5 42695019 42695019 G A GHR Silent p.R89R 0.16 TCGA-FR-A726-01 5 42700003 42700003 G C GHR Missense_Mutation p.V173L 0.15 tolerated(0.08) probably_damaging(0.99) TCGA-FR-A726-01 5 42718918 42718918 C T GHR Missense_Mutation p.H437Y 0.24 tolerated(0.4) benign(0.334) TCGA-FR-A726-01 5 434031 434031 G A AHRR Silent p.E414E 0.29 TCGA-FR-A726-01 5 45262140 45262140 C T HCN1 Silent p.P852P 0.21 TCGA-FR-A726-01 5 45262291 45262291 G A HCN1 Missense_Mutation p.S802F 0.24 tolerated_low_confidence(0.7) benign(0.146) TCGA-FR-A726-01 5 45262552 45262552 C T HCN1 Missense_Mutation p.R715Q 0.19 tolerated_low_confidence(0.05) probably_damaging(0.953) TCGA-FR-A726-01 5 482722 482722 C T SLC9A3 Missense_Mutation p.E433K 0.29 tolerated(0.09) possibly_damaging(0.794) TCGA-FR-A726-01 5 484700 484700 G A SLC9A3 Silent p.F289F 0.29 TCGA-FR-A726-01 5 52177794 52177794 G A ITGA1 Silent p.K238K 0.35 TCGA-FR-A726-01 5 52221185 52221185 G A ITGA1 Silent p.K827K 0.32 TCGA-FR-A726-01 5 52235472 52235472 G A ITGA1 Missense_Mutation p.G1044E 0.30 tolerated(0.24) benign(0.062) TCGA-FR-A726-01 5 52344192 52344192 G A ITGA2 Splice_Site p.X130_splice 0.36 TCGA-FR-A726-01 5 54275214 54275214 C T ESM1 Silent p.V167V 0.32 TCGA-FR-A726-01 5 54320498 54320498 G A GZMK Missense_Mutation p.M25I 0.25 tolerated(0.15) benign(0.047) TCGA-FR-A726-01 5 54405901 54405901 C T GZMA Missense_Mutation p.S227F 0.37 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 54424281 54424281 G A CDC20B Silent p.L288L 0.44 TCGA-FR-A726-01 5 54922451 54922451 G A SLC38A9 Silent p.F519F 0.31 TCGA-FR-A726-01 5 55081145 55081145 G A DDX4 Missense_Mutation p.E216K 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A726-01 5 55082343 55082343 C T DDX4 Intron 0.37 TCGA-FR-A726-01 5 55202058 55202058 G A IL31RA Silent p.E398E 0.37 TCGA-FR-A726-01 5 56208889 56208889 C T SETD9 Missense_Mutation p.P173L 0.08 deleterious(0) possibly_damaging(0.859) TCGA-FR-A726-01 5 60982855 60982855 C G C5orf64 Missense_Mutation p.F61L 0.35 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-FR-A726-01 5 63509788 63509788 C T RNF180 Missense_Mutation p.P212L 0.37 tolerated(0.28) possibly_damaging(0.908) TCGA-FR-A726-01 5 64447524 64447524 G A ADAMTS6 3'UTR 0.17 TCGA-FR-A726-01 5 64468800 64468800 C T ADAMTS6 Silent p.R982R 0.24 TCGA-FR-A726-01 5 64483849 64483849 C T ADAMTS6 Nonsense_Mutation p.W968* 0.36 TCGA-FR-A726-01 5 64483899 64483899 C T ADAMTS6 Missense_Mutation p.E952K 0.27 tolerated(0.19) benign(0.42) TCGA-FR-A726-01 5 64920804 64920804 C T CTC-534A2.2 5'UTR 0.21 TCGA-FR-A726-01 5 65449311 65449311 C T SREK1 Missense_Mutation p.S61F 0.06 deleterious(0) benign(0.333) TCGA-FR-A726-01 5 66426155 66426155 C T MAST4 Silent p.I621I 0.35 TCGA-FR-A726-01 5 66461774 66461774 C A MAST4 Missense_Mutation p.S2256Y 0.36 possibly_damaging(0.847) TCGA-FR-A726-01 5 66462496 66462496 C T MAST4 Missense_Mutation p.P2497S 0.42 benign(0.001) TCGA-FR-A726-01 5 66479157 66479157 G A CD180 Missense_Mutation p.S505F 0.35 tolerated(0.14) benign(0.138) TCGA-FR-A726-01 5 66479973 66479973 G A CD180 Missense_Mutation p.P233L 0.33 tolerated(0.82) benign(0) TCGA-FR-A726-01 5 66492479 66492479 G A CD180 5'UTR 0.19 TCGA-FR-A726-01 5 68558045 68558045 C T CDK7 Missense_Mutation p.P181S 0.40 deleterious(0) possibly_damaging(0.765) TCGA-FR-A726-01 5 68609866 68609866 C T CCDC125 Silent p.S104S 0.31 TCGA-FR-A726-01 5 68661433 68661433 G A TAF9 Silent p.F44F 0.41 TCGA-FR-A726-01 5 68715365 68715365 C T MARVELD2 Silent p.L51L 0.32 TCGA-FR-A726-01 5 69723475 69723475 C T GTF2H2B RNA 0.51 TCGA-FR-A726-01 5 70805813 70805813 C T BDP1 Missense_Mutation p.S965F 0.31 deleterious(0.03) possibly_damaging(0.693) TCGA-FR-A726-01 5 70805815 70805815 C T BDP1 Missense_Mutation p.P966S 0.30 tolerated(0.13) probably_damaging(0.969) TCGA-FR-A726-01 5 70805816 70805816 C T BDP1 Missense_Mutation p.P966L 0.30 tolerated(0.12) possibly_damaging(0.806) TCGA-FR-A726-01 5 70855920 70855920 C T BDP1 Missense_Mutation p.S2451F 0.36 deleterious(0) probably_damaging(0.948) TCGA-FR-A726-01 5 71015064 71015064 G A CARTPT 5'UTR 0.27 TCGA-FR-A726-01 5 71482533 71482533 C T MAP1B Silent p.S154S 0.27 TCGA-FR-A726-01 5 71756703 71756703 C T ZNF366 Silent p.Q207Q 0.26 TCGA-FR-A726-01 5 72864346 72864348 TGT GA UTP15 Frame_Shift_Del p.V96Rfs*14 0.21 TCGA-FR-A726-01 5 72865359 72865359 C T UTP15 Missense_Mutation p.H136Y 0.37 deleterious(0.01) possibly_damaging(0.461) TCGA-FR-A726-01 5 73205337 73205337 C T ARHGEF28 Missense_Mutation p.P1421L 0.28 tolerated(0.78) benign(0.002) TCGA-FR-A726-01 5 73931093 73931093 G A ENC1 Silent p.S406S 0.43 TCGA-FR-A726-01 5 74101001 74101001 C T FAM169A Missense_Mutation p.R260K 0.28 tolerated(0.54) benign(0.079) TCGA-FR-A726-01 5 74130333 74130333 G A FAM169A Silent p.F136F 0.20 TCGA-FR-A726-01 5 74324321 74324321 C T GCNT4 3'UTR 0.56 TCGA-FR-A726-01 5 74324460 74324460 C T GCNT4 3'UTR 0.31 TCGA-FR-A726-01 5 74681816 74681816 G A COL4A3BP Missense_Mutation p.P571L 0.38 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 5 75914175 75914175 A T F2RL2 Silent p.L119L 0.30 TCGA-FR-A726-01 5 75914225 75914225 G A F2RL2 Silent p.L103L 0.31 TCGA-FR-A726-01 5 75914226 75914226 G A F2RL2 Silent p.L102L 0.32 TCGA-FR-A726-01 5 75954412 75954412 G A IQGAP2 Missense_Mutation p.A817T 0.07 deleterious(0.03) benign(0.015) TCGA-FR-A726-01 5 75954480 75954480 G A IQGAP2 Silent p.R839R 0.35 TCGA-FR-A726-01 5 75969391 75969391 C T IQGAP2 Silent p.I1062I 0.33 TCGA-FR-A726-01 5 75970410 75970410 A T IQGAP2 Missense_Mutation p.R1135W 0.11 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 75993819 75993819 G A IQGAP2 Missense_Mutation p.R1405Q 0.43 deleterious(0.01) benign(0.19) TCGA-FR-A726-01 5 75997022 75997022 G A IQGAP2 Missense_Mutation p.D1497N 0.35 deleterious(0.04) benign(0.194) TCGA-FR-A726-01 5 76028537 76028537 T G F2R Missense_Mutation p.F163V 0.10 deleterious(0) possibly_damaging(0.904) TCGA-FR-A726-01 5 76029089 76029089 G A F2R Missense_Mutation p.E347K 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-FR-A726-01 5 76129454 76129454 C T F2RL1 Missense_Mutation p.P341L 0.30 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 5 76251538 76251538 C T CRHBP Missense_Mutation p.P132S 0.34 tolerated(0.17) benign(0.14) TCGA-FR-A726-01 5 76332544 76332544 C T AGGF1 Missense_Mutation p.S227F 0.35 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 5 76507023 76507023 G A PDE8B Silent p.R91R 0.41 TCGA-FR-A726-01 5 76621496 76621496 G A PDE8B Missense_Mutation p.E178K 0.38 deleterious(0) probably_damaging(0.957) TCGA-FR-A726-01 5 76703282 76703282 G A PDE8B Silent p.K455K 0.24 TCGA-FR-A726-01 5 76736794 76736794 G A WDR41 Silent p.V242V 0.26 TCGA-FR-A726-01 5 76934351 76934351 C T OTP Silent p.L8L 0.50 TCGA-FR-A726-01 5 76987331 76987331 G A TBCA Intron 0.29 TCGA-FR-A726-01 5 77590471 77590471 G A AP3B1 5'UTR 0.34 TCGA-FR-A726-01 5 77590472 77590472 G A AP3B1 5'UTR 0.36 TCGA-FR-A726-01 5 77590481 77590481 C A AP3B1 5'UTR 0.34 TCGA-FR-A726-01 5 7820724 7820724 G A ADCY2 Silent p.K1015K 0.48 TCGA-FR-A726-01 5 78340241 78340241 G A DMGDH Silent p.L294L 0.26 TCGA-FR-A726-01 5 78347234 78347234 C T DMGDH Silent p.R207R 0.38 TCGA-FR-A726-01 5 78379637 78379637 G A BHMT2 Missense_Mutation p.G323E 0.37 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 5 79031191 79031191 C T CMYA5 Silent p.D2201D 0.40 TCGA-FR-A726-01 5 79031946 79031946 C T CMYA5 Missense_Mutation p.P2453L 0.30 probably_damaging(0.994) TCGA-FR-A726-01 5 79336073 79336073 G A THBS4 Missense_Mutation p.E88K 0.33 deleterious(0) probably_damaging(0.952) TCGA-FR-A726-01 5 79616165 79616165 C T SPZ1 Missense_Mutation p.P44L 0.36 tolerated(0.76) benign(0.011) TCGA-FR-A726-01 5 79747488 79747488 T A ZFYVE16 Missense_Mutation p.F1189L 0.10 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 79855599 79855599 C T ANKRD34B Silent p.Q80Q 0.32 TCGA-FR-A726-01 5 80366158 80366158 C T RASGRF2 Intron 0.25 TCGA-FR-A726-01 5 80366371 80366371 G A RASGRF2 Missense_Mutation p.E202K 0.40 deleterious(0.01) possibly_damaging(0.696) TCGA-FR-A726-01 5 80521697 80521697 C T RASGRF2 3'UTR 0.31 TCGA-FR-A726-01 5 80626179 80626179 G A ACOT12 3'UTR 0.30 TCGA-FR-A726-01 5 80641768 80641768 C T ACOT12 Missense_Mutation p.G237R 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 5 82373175 82373175 C T TMEM167A 5'UTR 0.34 TCGA-FR-A726-01 5 82815582 82815582 C T VCAN Missense_Mutation p.S486L 0.34 tolerated(0.06) benign(0.097) TCGA-FR-A726-01 5 82817129 82817129 C T VCAN Nonsense_Mutation p.Q1002* 0.25 TCGA-FR-A726-01 5 82834232 82834232 G C VCAN Missense_Mutation p.A1804P 0.36 tolerated(0.11) benign(0.059) TCGA-FR-A726-01 5 82836521 82836521 C G VCAN Missense_Mutation p.L2567V 0.35 tolerated(0.05) possibly_damaging(0.504) TCGA-FR-A726-01 5 82836945 82836945 G A VCAN Missense_Mutation p.G2708E 0.35 tolerated(1) benign(0) TCGA-FR-A726-01 5 82868241 82868241 G A VCAN Missense_Mutation p.E3248K 0.28 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 5 82937418 82937418 G A HAPLN1 Missense_Mutation p.P321L 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 5 83259134 83259134 C T EDIL3 Missense_Mutation p.G395R 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 89923290 89923290 C T GPR98 Missense_Mutation p.S312F 0.41 possibly_damaging(0.831) TCGA-FR-A726-01 5 89923291 89923291 C T GPR98 Silent p.S312S 0.39 TCGA-FR-A726-01 5 89925198 89925198 C T GPR98 Missense_Mutation p.P561S 0.39 possibly_damaging(0.857) TCGA-FR-A726-01 5 89938750 89938750 G A GPR98 Silent p.E815E 0.29 TCGA-FR-A726-01 5 89939665 89939665 G A GPR98 Missense_Mutation p.E867K 0.17 possibly_damaging(0.636) TCGA-FR-A726-01 5 89940674 89940674 C T GPR98 Silent p.S962S 0.31 TCGA-FR-A726-01 5 89949085 89949085 G A GPR98 Missense_Mutation p.V1232I 0.27 benign(0) TCGA-FR-A726-01 5 89949301 89949301 C T GPR98 Silent p.L1304L 0.24 TCGA-FR-A726-01 5 89949567 89949567 C T GPR98 Silent p.S1392S 0.39 TCGA-FR-A726-01 5 90041526 90041526 G A GPR98 Missense_Mutation p.G3630R 0.34 probably_damaging(0.996) TCGA-FR-A726-01 5 90086870 90086870 G A GPR98 Missense_Mutation p.E4742K 0.35 possibly_damaging(0.905) TCGA-FR-A726-01 5 90101205 90101205 G A GPR98 Nonsense_Mutation p.W4922* 0.36 TCGA-FR-A726-01 5 90445960 90445960 C T GPR98 Silent p.F6182F 0.26 TCGA-FR-A726-01 5 90449089 90449089 C T GPR98 Missense_Mutation p.P6226S 0.38 possibly_damaging(0.857) TCGA-FR-A726-01 5 9052020 9052020 C T SEMA5A Missense_Mutation p.S937N 0.32 tolerated(0.1) benign(0.052) TCGA-FR-A726-01 5 92923897 92923897 C T NR2F1 Silent p.T246T 0.34 TCGA-FR-A726-01 5 93076323 93076323 G A POU5F2 Missense_Mutation p.S316F 0.26 tolerated(0.2) benign(0.047) TCGA-FR-A726-01 5 94114823 94114823 C G MCTP1 Missense_Mutation p.D868H 0.27 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 5 94289029 94289029 C T MCTP1 Missense_Mutation p.G292E 0.15 deleterious(0) probably_damaging(0.928) TCGA-FR-A726-01 5 95018313 95018313 C T SPATA9 Silent p.G23G 0.08 TCGA-FR-A726-01 5 95728550 95728550 C T PCSK1 3'UTR 0.45 TCGA-FR-A726-01 5 95746650 95746650 C T PCSK1 Missense_Mutation p.G308E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 5 95768739 95768739 C T PCSK1 Missense_Mutation p.R3Q 0.34 tolerated(0.24) benign(0) TCGA-FR-A726-01 5 96100940 96100940 C T CAST Missense_Mutation p.L609F 0.31 deleterious(0.03) probably_damaging(0.962) TCGA-FR-A726-01 5 9629301 9629301 G A TAS2R1 Missense_Mutation p.P282S 0.47 tolerated(0.2) benign(0.431) TCGA-FR-A726-01 5 98236586 98236586 A T CHD1 Missense_Mutation p.V263D 0.42 tolerated(0.2) benign(0.052) TCGA-FR-A726-01 5 98236587 98236587 C T CHD1 Missense_Mutation p.V263I 0.41 tolerated(0.1) benign(0.032) TCGA-FR-A726-01 6 100368841 100368841 C T MCHR2 Missense_Mutation p.G333E 0.25 tolerated(1) benign(0) TCGA-FR-A726-01 6 100868807 100868807 G A SIM1 Silent p.L342L 0.39 TCGA-FR-A726-01 6 101090585 101090585 G A ASCC3 Missense_Mutation p.P1258L 0.71 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 102074477 102074477 G A GRIK2 Nonsense_Mutation p.W169* 0.30 TCGA-FR-A726-01 6 102134149 102134149 C T GRIK2 Missense_Mutation p.S291F 0.35 deleterious(0.01) possibly_damaging(0.898) TCGA-FR-A726-01 6 10557236 10557236 C T GCNT2 Intron 0.49 TCGA-FR-A726-01 6 106967508 106967508 G A AIM1 Missense_Mutation p.D401N 0.11 tolerated_low_confidence(0.07) benign(0.025) TCGA-FR-A726-01 6 107390490 107390490 G A BEND3 Silent p.F635F 0.34 TCGA-FR-A726-01 6 10756765 10756765 C T TMEM14B 3'UTR 0.08 TCGA-FR-A726-01 6 10791929 10791929 C T MAK Missense_Mutation p.R432K 0.30 tolerated(0.67) benign(0.002) TCGA-FR-A726-01 6 107955804 107955804 G A SOBP Missense_Mutation p.D586N 0.36 tolerated_low_confidence(0.49) benign(0.234) TCGA-FR-A726-01 6 10891775 10891775 G A SYCP2L Silent p.K13K 0.18 TCGA-FR-A726-01 6 109308786 109308786 G A SESN1 Silent p.L539L 0.70 TCGA-FR-A726-01 6 110146311 110146311 C T FIG4 Missense_Mutation p.S856L 0.08 tolerated(0.12) benign(0.007) TCGA-FR-A726-01 6 110422863 110422863 G A WASF1 Missense_Mutation p.P484S 0.70 tolerated(0.25) benign(0.046) TCGA-FR-A726-01 6 110763500 110763500 G A SLC22A16 Missense_Mutation p.S377F 0.68 deleterious(0.03) possibly_damaging(0.652) TCGA-FR-A726-01 6 111709259 111709259 C T REV3L Missense_Mutation p.E298K 0.19 deleterious(0) benign(0.06) TCGA-FR-A726-01 6 112400878 112400878 C T TUBE1 Missense_Mutation p.D136N 0.09 deleterious(0) probably_damaging(0.937) TCGA-FR-A726-01 6 112462035 112462035 C T LAMA4 Missense_Mutation p.G968E 0.70 deleterious(0.01) benign(0.309) TCGA-FR-A726-01 6 112462620 112462620 G A LAMA4 Missense_Mutation p.P918L 0.29 tolerated(0.13) benign(0.167) TCGA-FR-A726-01 6 112537580 112537580 C T LAMA4 Missense_Mutation p.G96R 0.71 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 112671295 112671295 G A RFPL4B Missense_Mutation p.D129N 0.30 tolerated(0.09) possibly_damaging(0.562) TCGA-FR-A726-01 6 114378865 114378865 C T HS3ST5 Silent p.G199G 0.63 TCGA-FR-A726-01 6 116720403 116720403 C T DSE 5'UTR 0.31 TCGA-FR-A726-01 6 116757618 116757618 C T DSE Missense_Mutation p.L663F 0.68 deleterious(0.01) possibly_damaging(0.59) TCGA-FR-A726-01 6 116833274 116833274 G A FAM26E Missense_Mutation p.E139K 0.62 tolerated(0.87) benign(0.001) TCGA-FR-A726-01 6 117037464 117037464 C T KPNA5 Missense_Mutation p.P247S 0.28 tolerated(0.1) benign(0.148) TCGA-FR-A726-01 6 117113512 117113512 G A GPRC6A Silent p.S858S 0.26 TCGA-FR-A726-01 6 117113970 117113970 G A GPRC6A Missense_Mutation p.L706F 0.26 tolerated(0.05) possibly_damaging(0.555) TCGA-FR-A726-01 6 117127646 117127646 C T GPRC6A Missense_Mutation p.E408K 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-FR-A726-01 6 117241596 117241596 G A RFX6 Missense_Mutation p.E436K 0.41 deleterious(0.04) benign(0.011) TCGA-FR-A726-01 6 117710688 117710688 G A ROS1 Silent p.F528F 0.24 TCGA-FR-A726-01 6 117746737 117746737 G A ROS1 Missense_Mutation p.T28I 0.26 deleterious_low_confidence(0.04) benign(0.077) TCGA-FR-A726-01 6 117996783 117996783 C T NUS1 5'UTR 0.24 TCGA-FR-A726-01 6 118028326 118028326 G A NUS1 3'UTR 0.19 TCGA-FR-A726-01 6 119510870 119510870 G A MAN1A1 Missense_Mutation p.A502V 0.68 deleterious(0.02) probably_damaging(0.985) TCGA-FR-A726-01 6 119526035 119526035 C T MAN1A1 Silent p.R335R 0.31 TCGA-FR-A726-01 6 12123532 12123532 G A HIVEP1 Silent p.T1168T 0.22 TCGA-FR-A726-01 6 121768668 121768668 C T GJA1 Silent p.I225I 0.32 TCGA-FR-A726-01 6 123369871 123369871 G A CLVS2 Silent p.R223R 0.36 TCGA-FR-A726-01 6 123377089 123377089 G A CLVS2 Missense_Mutation p.D272N 0.34 tolerated(0.06) benign(0.439) TCGA-FR-A726-01 6 123539771 123539771 G A TRDN Missense_Mutation p.P722L 0.66 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-FR-A726-01 6 123539772 123539772 G A TRDN Missense_Mutation p.P722S 0.68 deleterious_low_confidence(0.04) possibly_damaging(0.715) TCGA-FR-A726-01 6 124979452 124979452 C T NKAIN2 Missense_Mutation p.R132C 0.26 deleterious(0.02) probably_damaging(0.966) TCGA-FR-A726-01 6 125231629 125231629 G A RP11-510H23.1 RNA 0.43 TCGA-FR-A726-01 6 125283905 125283905 G A RP11-510H23.1 Intron 0.36 TCGA-FR-A726-01 6 125366414 125366414 G A RNF217 Missense_Mutation p.E22K 0.25 deleterious(0.05) benign(0.115) TCGA-FR-A726-01 6 125379111 125379111 C T RNF217 Silent p.F88F 0.73 TCGA-FR-A726-01 6 125397816 125397816 G A RNF217 Missense_Mutation p.R140Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 125397908 125397908 G A RNF217 Missense_Mutation p.G171R 0.29 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 6 125397962 125397962 G A RNF217 Missense_Mutation p.E189K 0.29 tolerated(0.08) possibly_damaging(0.76) TCGA-FR-A726-01 6 125597226 125597226 A G HDDC2 3'UTR 0.23 TCGA-FR-A726-01 6 126210385 126210385 C T NCOA7 Silent p.S395S 0.24 TCGA-FR-A726-01 6 127471701 127471701 G A RSPO3 Missense_Mutation p.M140I 0.34 deleterious(0.01) possibly_damaging(0.724) TCGA-FR-A726-01 6 127517284 127517284 T C RSPO3 3'UTR 0.64 TCGA-FR-A726-01 6 127796938 127796938 G A SOGA3 Missense_Mutation p.R745C 0.64 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 6 127797031 127797031 C T SOGA3 Missense_Mutation p.E714K 0.32 deleterious(0.01) possibly_damaging(0.902) TCGA-FR-A726-01 6 127797571 127797571 C T SOGA3 Missense_Mutation p.E534K 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 127912726 127912726 C T C6orf58 Missense_Mutation p.H318Y 0.27 tolerated_low_confidence(0.29) possibly_damaging(0.728) TCGA-FR-A726-01 6 128134538 128134538 G A THEMIS Silent p.I416I 0.36 TCGA-FR-A726-01 6 128151027 128151027 G A THEMIS Silent p.I101I 0.28 TCGA-FR-A726-01 6 128327179 128327179 G A PTPRK Intron 0.43 TCGA-FR-A726-01 6 128403753 128403753 G A PTPRK Missense_Mutation p.P536S 0.17 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 6 129486763 129486763 G A LAMA2 Missense_Mutation p.D417N 0.38 tolerated(0.11) benign(0.258) TCGA-FR-A726-01 6 129637084 129637084 G A LAMA2 Missense_Mutation p.E1305K 0.26 tolerated(0.12) possibly_damaging(0.79) TCGA-FR-A726-01 6 130378591 130378591 C T L3MBTL3 Silent p.S236S 0.30 TCGA-FR-A726-01 6 130535583 130535583 C T SAMD3 Silent p.L56L 0.64 TCGA-FR-A726-01 6 130762051 130762051 G A TMEM200A Missense_Mutation p.D162N 0.34 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 6 131211548 131211548 G A EPB41L2 Missense_Mutation p.R516C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A726-01 6 131229974 131229974 C T EPB41L2 Silent p.K280K 0.52 TCGA-FR-A726-01 6 131277486 131277486 G A EPB41L2 Missense_Mutation p.S47F 0.11 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 6 1313801 1313801 G A FOXQ1 Missense_Mutation p.D288N 0.26 tolerated(0.11) benign(0.001) TCGA-FR-A726-01 6 13185077 13185077 C T PHACTR1 Silent p.S123S 0.26 TCGA-FR-A726-01 6 131924302 131924302 A C MED23 Missense_Mutation p.I600S 0.39 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 6 132004259 132004259 G A ENPP3 Silent p.R359R 0.62 TCGA-FR-A726-01 6 132181575 132181575 C T ENPP1 Missense_Mutation p.P282S 0.41 tolerated(0.06) probably_damaging(0.959) TCGA-FR-A726-01 6 132636806 132636806 G A MOXD1 Silent p.F492F 0.26 TCGA-FR-A726-01 6 133055454 133055454 G A VNN3 Silent p.Y94Y 0.50 TCGA-FR-A726-01 6 133055545 133055545 A C VNN3 Intron 0.33 TCGA-FR-A726-01 6 133079012 133079012 G A VNN2 Missense_Mutation p.S4F 0.73 tolerated(0.06) benign(0.028) TCGA-FR-A726-01 6 133769254 133769254 A C EYA4 Missense_Mutation p.N72H 0.19 deleterious_low_confidence(0.01) benign(0.323) TCGA-FR-A726-01 6 134212961 134212961 G A TCF21 3'UTR 0.69 TCGA-FR-A726-01 6 135308833 135308833 G A HBS1L Missense_Mutation p.R394C 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 136500226 136500226 C T PDE7B Missense_Mutation p.H299Y 0.32 deleterious(0) benign(0.407) TCGA-FR-A726-01 6 136589409 136589409 G A BCLAF1 Missense_Mutation p.S763F 0.15 tolerated(0.08) possibly_damaging(0.683) TCGA-FR-A726-01 6 136599228 136599228 G A BCLAF1 Missense_Mutation p.S264F 0.19 deleterious(0) possibly_damaging(0.641) TCGA-FR-A726-01 6 136599345 136599345 G A BCLAF1 Missense_Mutation p.S225L 0.14 deleterious(0) possibly_damaging(0.504) TCGA-FR-A726-01 6 136599530 136599530 T A BCLAF1 Missense_Mutation p.E163D 0.15 tolerated_low_confidence(0.48) benign(0.388) TCGA-FR-A726-01 6 136599710 136599710 C T BCLAF1 Silent p.R103R 0.16 TCGA-FR-A726-01 6 137041633 137041633 G A MAP3K5 Silent p.I181I 0.39 TCGA-FR-A726-01 6 137322911 137322911 C T IL20RA Nonsense_Mutation p.W482* 0.35 TCGA-FR-A726-01 6 137323365 137323365 C T IL20RA Missense_Mutation p.G331E 0.66 tolerated(1) benign(0.003) TCGA-FR-A726-01 6 137519694 137519694 G A IFNGR1 Missense_Mutation p.S315F 0.33 tolerated(0.14) benign(0) TCGA-FR-A726-01 6 137814824 137814824 C T OLIG3 Missense_Mutation p.G162R 0.25 tolerated(0.19) probably_damaging(0.998) TCGA-FR-A726-01 6 138196884 138196884 C T TNFAIP3 Silent p.A182A 0.31 TCGA-FR-A726-01 6 138417588 138417588 G A PERP Silent p.I86I 0.18 TCGA-FR-A726-01 6 138655271 138655271 C T KIAA1244 Missense_Mutation p.S1763F 0.63 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 139094890 139094890 C T CCDC28A Missense_Mutation p.L27F 0.35 deleterious_low_confidence(0.01) benign(0.032) TCGA-FR-A726-01 6 139223839 139223839 T A ECT2L 3'UTR 0.29 TCGA-FR-A726-01 6 139237068 139237068 G A REPS1 Silent p.P548P 0.24 TCGA-FR-A726-01 6 1394963 1394963 C T FOXF2 Missense_Mutation p.P402S 0.24 tolerated(0.38) benign(0.234) TCGA-FR-A726-01 6 143660817 143660817 C T AIG1 3'UTR 0.56 TCGA-FR-A726-01 6 144262728 144262728 C T PLAGL1 Missense_Mutation p.E409K 0.37 deleterious(0.01) benign(0.197) TCGA-FR-A726-01 6 144262729 144262729 C T PLAGL1 Silent p.G408G 0.32 TCGA-FR-A726-01 6 144843287 144843287 T A UTRN Missense_Mutation p.F1905I 0.10 tolerated(0.21) benign(0.001) TCGA-FR-A726-01 6 146673594 146673594 G A GRM1 Silent p.E465E 0.64 TCGA-FR-A726-01 6 150266520 150266520 G A ULBP2 Missense_Mutation p.G54D 0.61 deleterious(0.02) probably_damaging(0.914) TCGA-FR-A726-01 6 151355699 151355699 C T MTHFD1L Missense_Mutation p.P886L 0.09 deleterious(0.04) benign(0.183) TCGA-FR-A726-01 6 151907142 151907142 T G CCDC170 Missense_Mutation p.L404R 0.25 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 6 152332867 152332867 C T ESR1 Silent p.L391L 0.29 TCGA-FR-A726-01 6 152640006 152640006 C T SYNE1 Missense_Mutation p.D5461N 0.27 benign(0.384) TCGA-FR-A726-01 6 152647763 152647763 G A SYNE1 Silent p.T4987T 0.71 TCGA-FR-A726-01 6 152737542 152737542 G A SYNE1 Silent p.T2010T 0.30 TCGA-FR-A726-01 6 153043262 153043262 C T MYCT1 Silent p.P194P 0.66 TCGA-FR-A726-01 6 153075392 153075392 G A VIP Missense_Mutation p.E67K 0.36 tolerated(0.06) possibly_damaging(0.619) TCGA-FR-A726-01 6 15374375 15374375 G A JARID2 Missense_Mutation p.E25K 0.22 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 6 154360682 154360682 G A OPRM1 Missense_Mutation p.M94I 0.25 tolerated_low_confidence(0.08) benign(0.042) TCGA-FR-A726-01 6 155450828 155450828 G T TIAM2 Missense_Mutation p.K157N 0.63 tolerated_low_confidence(0.1) benign(0.131) TCGA-FR-A726-01 6 155450835 155450835 C T TIAM2 Nonsense_Mutation p.R160* 0.23 TCGA-FR-A726-01 6 155504409 155504409 G A TIAM2 Missense_Mutation p.E947K 0.66 tolerated(0.68) benign(0.089) TCGA-FR-A726-01 6 158449941 158449941 T A SYNJ2 Missense_Mutation p.I123N 0.37 deleterious(0) possibly_damaging(0.774) TCGA-FR-A726-01 6 158517141 158517141 G A SYNJ2 Silent p.Q1412Q 0.34 TCGA-FR-A726-01 6 159653640 159653640 G A FNDC1 Missense_Mutation p.R699K 0.46 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 6 159654320 159654320 C T FNDC1 Missense_Mutation p.P926S 0.51 tolerated_low_confidence(0.18) unknown(0) TCGA-FR-A726-01 6 159655021 159655021 G A FNDC1 Silent p.S1159S 0.37 TCGA-FR-A726-01 6 160230123 160230123 A C PNLDC1 Missense_Mutation p.K228T 0.31 deleterious(0) possibly_damaging(0.898) TCGA-FR-A726-01 6 160240014 160240014 C T PNLDC1 Missense_Mutation p.P421S 0.30 deleterious(0.01) possibly_damaging(0.849) TCGA-FR-A726-01 6 160240383 160240383 C T PNLDC1 Nonsense_Mutation p.Q500* 0.69 TCGA-FR-A726-01 6 160494892 160494892 C T IGF2R Missense_Mutation p.S1684F 0.26 deleterious(0) probably_damaging(0.972) TCGA-FR-A726-01 6 160662558 160662558 G A SLC22A2 Silent p.F483F 0.52 TCGA-FR-A726-01 6 160913865 160913865 G A LPAL2 RNA 0.62 TCGA-FR-A726-01 6 160977175 160977175 C T LPA Missense_Mutation p.G1619S 0.06 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 6 161152809 161152809 G A PLG Missense_Mutation p.G491S 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 161557663 161557663 G A AGPAT4 Missense_Mutation p.S349F 0.33 tolerated(0.08) probably_damaging(0.987) TCGA-FR-A726-01 6 162475131 162475131 T A PARK2 Missense_Mutation p.T204S 0.27 tolerated(0.28) possibly_damaging(0.459) TCGA-FR-A726-01 6 163483254 163483254 C T PACRG Missense_Mutation p.P122S 0.62 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 6 166571958 166571958 G A T Missense_Mutation p.P385S 0.71 tolerated(0.49) benign(0.001) TCGA-FR-A726-01 6 167550735 167550735 G A CCR6 Silent p.R339R 0.37 TCGA-FR-A726-01 6 167708122 167708122 G A UNC93A Missense_Mutation p.G69R 0.29 deleterious(0.01) benign(0.222) TCGA-FR-A726-01 6 167728920 167728920 G A UNC93A Missense_Mutation p.E452K 0.28 tolerated(0.59) benign(0.027) TCGA-FR-A726-01 6 167753919 167753919 C T TTLL2 Silent p.F177F 0.39 TCGA-FR-A726-01 6 167755069 167755069 C T TTLL2 Missense_Mutation p.P561S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 167786580 167786580 C T TCP10 3'UTR 0.16 TCGA-FR-A726-01 6 167796369 167796369 C T TCP10 5'UTR 0.32 TCGA-FR-A726-01 6 168319457 168319457 G A MLLT4 Missense_Mutation p.D911N 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 169632099 169632099 G A THBS2 Silent p.T709T 0.73 TCGA-FR-A726-01 6 169632899 169632899 G A THBS2 Missense_Mutation p.P598S 0.33 tolerated(0.23) benign(0) TCGA-FR-A726-01 6 169632901 169632901 A G THBS2 Missense_Mutation p.V597A 0.34 tolerated(0.13) possibly_damaging(0.669) TCGA-FR-A726-01 6 170088965 170088965 G A WDR27 Missense_Mutation p.P46L 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 170176567 170176567 C T ERMARD Missense_Mutation p.R513C 0.43 tolerated(0.12) benign(0.002) TCGA-FR-A726-01 6 170179320 170179320 C A ERMARD Silent p.L594L 0.29 TCGA-FR-A726-01 6 17764278 17764278 G A KIF13A 3'UTR 0.17 TCGA-FR-A726-01 6 20487000 20487000 C T E2F3 Missense_Mutation p.P322L 0.06 deleterious(0.01) possibly_damaging(0.637) TCGA-FR-A726-01 6 2117700 2117700 T C GMDS Intron 0.40 TCGA-FR-A726-01 6 22294698 22294698 G A PRL Silent p.D48D 0.16 TCGA-FR-A726-01 6 22297221 22297221 C T PRL 5'UTR 0.16 TCGA-FR-A726-01 6 24134674 24134674 C T NRSN1 Missense_Mutation p.S40L 0.30 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 6 24146027 24146027 A T NRSN1 Missense_Mutation p.E147D 0.07 deleterious(0.02) probably_damaging(0.958) TCGA-FR-A726-01 6 24437389 24437389 G A GPLD1 Nonsense_Mutation p.R717* 0.24 TCGA-FR-A726-01 6 24667044 24667044 T C TDP2 Missense_Mutation p.E16G 0.22 tolerated(0.08) benign(0.168) TCGA-FR-A726-01 6 24873168 24873168 G A FAM65B Nonsense_Mutation p.Q93* 0.14 TCGA-FR-A726-01 6 25605104 25605104 C T LRRC16A Missense_Mutation p.S1206L 0.18 tolerated_low_confidence(0.69) benign(0) TCGA-FR-A726-01 6 25726436 25726436 C T HIST1H2AA Missense_Mutation p.G107E 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A726-01 6 25727328 25727328 G A HIST1H2BA Missense_Mutation p.M64I 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.503) TCGA-FR-A726-01 6 25770670 25770670 G A SLC17A4 Missense_Mutation p.R197K 0.21 tolerated(0.12) benign(0.057) TCGA-FR-A726-01 6 25779437 25779437 G A SLC17A4 3'UTR 0.24 TCGA-FR-A726-01 6 25779483 25779483 C T SLC17A4 3'UTR 0.18 TCGA-FR-A726-01 6 25820126 25820126 C T SLC17A1 Nonsense_Mutation p.W75* 0.27 TCGA-FR-A726-01 6 25845522 25845522 G A SLC17A3 3'UTR 0.27 TCGA-FR-A726-01 6 25861906 25861906 C T SLC17A3 Missense_Mutation p.E191K 0.43 deleterious(0.04) benign(0.158) TCGA-FR-A726-01 6 25915972 25915972 G A SLC17A2 Missense_Mutation p.S352L 0.18 deleterious(0) possibly_damaging(0.857) TCGA-FR-A726-01 6 26031949 26031949 G T HIST1H3B Missense_Mutation p.H114N 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A726-01 6 26031950 26031950 G A HIST1H3B Silent p.I113I 0.22 TCGA-FR-A726-01 6 26234548 26234548 G A HIST1H1D Missense_Mutation p.S205L 0.21 tolerated(0.42) unknown(0) TCGA-FR-A726-01 6 2623737 2623737 G A C6orf195 Missense_Mutation p.P107L 0.23 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FR-A726-01 6 2623954 2623954 G A C6orf195 Missense_Mutation p.P35S 0.27 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FR-A726-01 6 26407984 26407984 C T BTN3A1 Silent p.P173P 0.28 TCGA-FR-A726-01 6 26413872 26413872 C T BTN3A1 Silent p.F498F 0.24 TCGA-FR-A726-01 6 26426594 26426594 C T BTN2A3P RNA 0.27 TCGA-FR-A726-01 6 26452532 26452532 G A BTN3A3 Missense_Mutation p.E550K 0.20 deleterious(0.03) probably_damaging(0.991) TCGA-FR-A726-01 6 26468109 26468109 G A BTN2A1 Intron 0.19 TCGA-FR-A726-01 6 26468635 26468635 C T BTN2A1 Missense_Mutation p.S481F 0.23 deleterious(0.01) benign(0.078) TCGA-FR-A726-01 6 26468871 26468871 C T BTN2A1 3'UTR 0.31 TCGA-FR-A726-01 6 26598599 26598599 C T ABT1 Missense_Mutation p.T182I 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 26598600 26598600 C T ABT1 Silent p.T182T 0.28 TCGA-FR-A726-01 6 26846498 26846498 G A GUSBP2 RNA 0.17 TCGA-FR-A726-01 6 26846499 26846499 G A GUSBP2 RNA 0.13 TCGA-FR-A726-01 6 2685601 2685601 C T MYLK4 Silent p.L158L 0.18 TCGA-FR-A726-01 6 27101030 27101030 C T HIST1H2AG Silent p.T60T 0.24 TCGA-FR-A726-01 6 27368744 27368744 G A ZNF391 Missense_Mutation p.G199R 0.45 tolerated(0.13) probably_damaging(1) TCGA-FR-A726-01 6 27368871 27368871 G A ZNF391 Missense_Mutation p.R241Q 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-FR-A726-01 6 27776029 27776029 G A HIST1H2AI Silent p.K14K 0.19 TCGA-FR-A726-01 6 27806096 27806096 C T HIST1H2AK Missense_Mutation p.G8S 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-FR-A726-01 6 27879672 27879672 G A OR2B2 Silent p.F142F 0.06 TCGA-FR-A726-01 6 27925315 27925315 C T OR2B6 Silent p.A99A 0.45 TCGA-FR-A726-01 6 28094614 28094614 G A ZSCAN16 Silent p.L147L 0.28 TCGA-FR-A726-01 6 28228020 28228020 G A NKAPL Missense_Mutation p.E291K 0.26 deleterious(0.01) possibly_damaging(0.865) TCGA-FR-A726-01 6 28269871 28269871 C T PGBD1 Missense_Mutation p.S747L 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 28297303 28297303 G A ZSCAN31 Missense_Mutation p.P53L 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 2840731 2840731 G A SERPINB1 Silent p.I30I 0.45 TCGA-FR-A726-01 6 28493824 28493824 C T GPX5 Missense_Mutation p.P12S 0.22 tolerated_low_confidence(0.24) benign(0.007) TCGA-FR-A726-01 6 28497338 28497338 C T GPX5 Silent p.F66F 0.31 TCGA-FR-A726-01 6 28501874 28501874 C T GPX5 Missense_Mutation p.S199F 0.26 tolerated(0.71) benign(0.003) TCGA-FR-A726-01 6 28540176 28540176 C T SCAND3 Missense_Mutation p.E1164K 0.54 tolerated_low_confidence(0.08) probably_damaging(0.954) TCGA-FR-A726-01 6 28540528 28540528 C T SCAND3 Missense_Mutation p.M1046I 0.22 tolerated(0.09) possibly_damaging(0.608) TCGA-FR-A726-01 6 28542837 28542837 C T SCAND3 Missense_Mutation p.E549K 0.26 deleterious_low_confidence(0) benign(0.052) TCGA-FR-A726-01 6 28543687 28543687 C T SCAND3 Silent p.K265K 0.22 TCGA-FR-A726-01 6 28547160 28547160 C T SCAND3 Missense_Mutation p.E153K 0.46 deleterious_low_confidence(0) benign(0.046) TCGA-FR-A726-01 6 28554291 28554291 C T SCAND3 Silent p.E68E 0.24 TCGA-FR-A726-01 6 28871932 28871932 G A TRIM27 Missense_Mutation p.P486L 0.16 tolerated(0.07) probably_damaging(0.981) TCGA-FR-A726-01 6 28871934 28871934 A T TRIM27 Silent p.A485A 0.16 TCGA-FR-A726-01 6 29012884 29012884 C T OR2W1 Missense_Mutation p.M23I 0.30 deleterious(0) benign(0.003) TCGA-FR-A726-01 6 29054263 29054263 C T OR2B3 Missense_Mutation p.A255T 0.21 deleterious(0.04) possibly_damaging(0.794) TCGA-FR-A726-01 6 29054710 29054710 C T OR2B3 Missense_Mutation p.A106T 0.19 tolerated(0.22) possibly_damaging(0.589) TCGA-FR-A726-01 6 29054711 29054711 C T OR2B3 Silent p.L105L 0.18 TCGA-FR-A726-01 6 29055016 29055016 C T OR2B3 Missense_Mutation p.E4K 0.21 tolerated(1) benign(0.017) TCGA-FR-A726-01 6 29080307 29080307 C T OR2J3 Missense_Mutation p.L214F 0.15 deleterious(0.03) benign(0.106) TCGA-FR-A726-01 6 29141897 29141897 C T OR2J2 Missense_Mutation p.S162F 0.46 tolerated(0.18) benign(0.029) TCGA-FR-A726-01 6 29274811 29274811 G A OR14J1 Silent p.V115V 0.17 TCGA-FR-A726-01 6 29323212 29323212 C T OR5V1 Missense_Mutation p.S254N 0.25 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 6 29323340 29323340 G A OR5V1 Silent p.F211F 0.51 TCGA-FR-A726-01 6 29408399 29408399 G A OR10C1 Missense_Mutation p.A203T 0.30 tolerated(0.09) possibly_damaging(0.894) TCGA-FR-A726-01 6 29524025 29524025 G A UBD Missense_Mutation p.P44S 0.42 tolerated(0.06) benign(0.21) TCGA-FR-A726-01 6 29581167 29581167 G A GABBR1 Silent p.A473A 0.17 TCGA-FR-A726-01 6 29589906 29589906 G A GABBR1 Missense_Mutation p.P347L 0.19 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 6 29624949 29624949 C T MOG 5'Flank 0.50 TCGA-FR-A726-01 6 29635434 29635434 G A MOG Missense_Mutation p.E189K 0.23 deleterious(0.02) possibly_damaging(0.708) TCGA-FR-A726-01 6 29641210 29641210 A C ZFP57 Silent p.L226L 0.06 TCGA-FR-A726-01 6 29795666 29795666 G A HLA-G Silent p.G15G 0.29 TCGA-FR-A726-01 6 29796516 29796516 G A HLA-G Silent p.R180R 0.30 TCGA-FR-A726-01 6 30035241 30035241 C T PPP1R11 Silent p.T18T 0.23 TCGA-FR-A726-01 6 30043033 30043033 G A RNF39 Silent p.I178I 0.22 TCGA-FR-A726-01 6 30043056 30043056 C T RNF39 Missense_Mutation p.G171R 0.30 tolerated(0.1) possibly_damaging(0.64) TCGA-FR-A726-01 6 30080228 30080228 C T TRIM31 Missense_Mutation p.E119K 0.34 tolerated(0.14) possibly_damaging(0.451) TCGA-FR-A726-01 6 30131401 30131401 G A TRIM15 5'UTR 0.23 TCGA-FR-A726-01 6 30514470 30514470 G A GNL1 Intron 0.26 TCGA-FR-A726-01 6 30679745 30679745 G A MDC1 Silent p.S658S 0.33 TCGA-FR-A726-01 6 30867601 30867601 C T DDR1 3'UTR 0.40 TCGA-FR-A726-01 6 30893387 30893387 C T VARS2 Missense_Mutation p.T981I 0.25 deleterious(0.02) benign(0.159) TCGA-FR-A726-01 6 30920103 30920103 A C DPCR1 Missense_Mutation p.T1288P 0.25 tolerated(0.11) possibly_damaging(0.606) TCGA-FR-A726-01 6 30920141 30920141 C T DPCR1 Silent p.L1300L 0.25 TCGA-FR-A726-01 6 30920822 30920822 C T DPCR1 Silent p.G1370G 0.29 TCGA-FR-A726-01 6 30951533 30951533 G A MUC21 5'UTR 0.23 TCGA-FR-A726-01 6 30951922 30951922 C T MUC21 Intron 0.14 TCGA-FR-A726-01 6 31105669 31105669 G A PSORS1C2 3'UTR 0.31 TCGA-FR-A726-01 6 31107507 31107507 A G PSORS1C1 Missense_Mutation p.D86G 0.30 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-FR-A726-01 6 31541515 31541515 T G LTA 3'UTR 0.07 TCGA-FR-A726-01 6 3155105 3155105 G A TUBB2A Silent p.A110A 0.22 TCGA-FR-A726-01 6 31560496 31560496 C T NCR3 Translation_Start_Site p.M1? 0.45 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A726-01 6 31599959 31599959 G A PRRC2A Missense_Mutation p.R1170Q 0.24 unknown(0) TCGA-FR-A726-01 6 31730393 31730393 G A MSH5 3'UTR 0.48 TCGA-FR-A726-01 6 31760276 31760276 G A VARS Missense_Mutation p.L227F 0.22 deleterious(0.04) benign(0.001) TCGA-FR-A726-01 6 31828030 31828030 G A NEU1 Silent p.L270L 0.27 TCGA-FR-A726-01 6 31831360 31831360 G A SLC44A4 3'UTR 0.20 TCGA-FR-A726-01 6 31839317 31839317 C T SLC44A4 Nonsense_Mutation p.W184* 0.51 TCGA-FR-A726-01 6 31855683 31855683 C T EHMT2 Missense_Mutation p.D601N 0.34 tolerated(0.18) benign(0.212) TCGA-FR-A726-01 6 31901651 31901651 C T C2 Silent p.Y208Y 0.21 TCGA-FR-A726-01 6 31914272 31914272 C T CFB Missense_Mutation p.P565S 0.32 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 6 31915578 31915578 G A CFB Missense_Mutation p.E742K 0.05 tolerated(0.08) probably_damaging(0.978) TCGA-FR-A726-01 6 31915744 31915744 C T CFB Silent p.I763I 0.23 TCGA-FR-A726-01 6 31931203 31931203 C T SKIV2L Missense_Mutation p.R473C 0.27 deleterious(0) possibly_damaging(0.855) TCGA-FR-A726-01 6 32010349 32010349 C T TNXB Silent p.G460G 0.24 TCGA-FR-A726-01 6 32011659 32011659 C T TNXB Silent p.Q228Q 0.45 TCGA-FR-A726-01 6 32024638 32024638 G A TNXB Missense_Mutation p.P2623L 0.26 benign(0.011) TCGA-FR-A726-01 6 32056701 32056701 C T TNXB Silent p.Q880Q 0.10 TCGA-FR-A726-01 6 32083731 32083731 G A ATF6B Missense_Mutation p.R633C 0.26 deleterious(0) possibly_damaging(0.816) TCGA-FR-A726-01 6 32163547 32163547 G A NOTCH4 Silent p.A1893A 0.19 TCGA-FR-A726-01 6 3224923 3224923 G A TUBB2B 3'UTR 0.29 TCGA-FR-A726-01 6 32363831 32363831 C T BTNL2 Missense_Mutation p.D355N 0.32 deleterious(0.04) possibly_damaging(0.591) TCGA-FR-A726-01 6 32609750 32609750 G C HLA-DQA1 Missense_Mutation p.E111D 0.22 tolerated(0.44) benign(0.002) TCGA-FR-A726-01 6 32713045 32713045 G A HLA-DQA2 Silent p.T64T 0.21 TCGA-FR-A726-01 6 32726822 32726822 G A HLA-DQB2 Missense_Mutation p.P151S 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 3273452 3273452 C T SLC22A23 Missense_Mutation p.G633E 0.18 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 6 32814904 32814904 G A TAP1 Missense_Mutation p.P721S 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 32847210 32847210 C T PPP1R2P1 RNA 0.21 TCGA-FR-A726-01 6 32944218 32944218 C T BRD2 Missense_Mutation p.P268S 0.24 tolerated(0.08) benign(0.134) TCGA-FR-A726-01 6 33133587 33133587 G A COL11A2 Missense_Mutation p.P1411S 0.22 unknown(0) TCGA-FR-A726-01 6 33133964 33133964 C T COL11A2 Missense_Mutation p.G1385E 0.21 unknown(0) TCGA-FR-A726-01 6 33137642 33137642 C T COL11A2 Missense_Mutation p.G1133E 0.20 unknown(0) TCGA-FR-A726-01 6 33145218 33145218 G A COL11A2 Missense_Mutation p.P562S 0.33 possibly_damaging(0.803) TCGA-FR-A726-01 6 33147514 33147514 C T COL11A2 Silent p.A390A 0.17 TCGA-FR-A726-01 6 33235047 33235047 C T VPS52 Missense_Mutation p.G348E 0.22 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 6 33235048 33235048 C T VPS52 Missense_Mutation p.G348R 0.22 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 33245408 33245408 C T B3GALT4 Missense_Mutation p.P71L 0.22 deleterious(0.05) possibly_damaging(0.669) TCGA-FR-A726-01 6 33288779 33288779 G A DAXX Missense_Mutation p.P258L 0.14 deleterious(0.04) possibly_damaging(0.707) TCGA-FR-A726-01 6 33289242 33289242 C T DAXX Missense_Mutation p.E104K 0.47 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 6 33290773 33290773 T A DAXX 5'UTR 0.13 TCGA-FR-A726-01 6 33414539 33414539 C T SYNGAP1 Missense_Mutation p.S1257F 0.24 tolerated(0.3) possibly_damaging(0.748) TCGA-FR-A726-01 6 33641370 33641370 C T ITPR3 Silent p.F977F 0.14 TCGA-FR-A726-01 6 33644619 33644619 C T ITPR3 Silent p.T1119T 0.21 TCGA-FR-A726-01 6 33663626 33663626 C T ITPR3 3'UTR 0.29 TCGA-FR-A726-01 6 33690661 33690661 G A IP6K3 Missense_Mutation p.P357S 0.24 tolerated(0.23) benign(0.026) TCGA-FR-A726-01 6 33694534 33694534 G A IP6K3 Missense_Mutation p.S188F 0.18 deleterious(0.02) possibly_damaging(0.868) TCGA-FR-A726-01 6 34004025 34004025 G A GRM4 Missense_Mutation p.S621L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 34507088 34507088 C T SPDEF Silent p.K256K 0.24 TCGA-FR-A726-01 6 34622399 34622399 T C C6orf106 Intron 0.46 TCGA-FR-A726-01 6 348207 348207 C T DUSP22 Missense_Mutation p.S123F 0.16 deleterious(0) probably_damaging(0.95) TCGA-FR-A726-01 6 34839394 34839394 G A UHRF1BP1 Missense_Mutation p.G1339S 0.48 tolerated(0.06) probably_damaging(0.983) TCGA-FR-A726-01 6 34847785 34847785 G A UHRF1BP1 3'Flank 0.24 TCGA-FR-A726-01 6 35216566 35216566 G A SCUBE3 3'UTR 0.46 TCGA-FR-A726-01 6 35393718 35393718 C T PPARD Silent p.F396F 0.30 TCGA-FR-A726-01 6 35423814 35423814 C T FANCE Missense_Mutation p.S180F 0.24 tolerated(0.74) benign(0.052) TCGA-FR-A726-01 6 35705859 35705859 C T ARMC12 Silent p.L100L 0.21 TCGA-FR-A726-01 6 35705867 35705867 C T ARMC12 Missense_Mutation p.S103F 0.26 tolerated(0.1) probably_damaging(0.997) TCGA-FR-A726-01 6 35705868 35705868 T A ARMC12 Silent p.S103S 0.25 TCGA-FR-A726-01 6 35762824 35762824 G A CLPS 3'UTR 0.20 TCGA-FR-A726-01 6 35965630 35965630 T C SLC26A8 Missense_Mutation p.Q171R 0.46 tolerated(0.2) benign(0) TCGA-FR-A726-01 6 36169144 36169144 C T BRPF3 Missense_Mutation p.H349Y 0.61 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 6 36355424 36355424 C T ETV7 5'UTR 0.21 TCGA-FR-A726-01 6 36359613 36359613 A C PXT1 Missense_Mutation p.F113L 0.26 tolerated_low_confidence(0.14) benign(0.14) TCGA-FR-A726-01 6 36359618 36359618 G A PXT1 Missense_Mutation p.H112Y 0.20 tolerated_low_confidence(0.19) benign(0.057) TCGA-FR-A726-01 6 36653713 36653713 C T CDKN1A 3'UTR 0.31 TCGA-FR-A726-01 6 36945899 36945899 G A MTCH1 Silent p.S182S 0.18 TCGA-FR-A726-01 6 36979590 36979590 C T FGD2 Nonsense_Mutation p.Q163* 0.29 TCGA-FR-A726-01 6 36990135 36990135 G A FGD2 Missense_Mutation p.A483T 0.28 tolerated(0.05) probably_damaging(1) TCGA-FR-A726-01 6 36995880 36995880 G A FGD2 Missense_Mutation p.E637K 0.20 tolerated(0.74) benign(0.007) TCGA-FR-A726-01 6 37247122 37247122 G A TBC1D22B Silent p.K52K 0.24 TCGA-FR-A726-01 6 37247221 37247221 C T TBC1D22B Silent p.F85F 0.29 TCGA-FR-A726-01 6 37250720 37250720 C T TBC1D22B Missense_Mutation p.L222F 0.47 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 6 37298961 37298961 C T TBC1D22B 3'UTR 0.23 TCGA-FR-A726-01 6 37467670 37467670 G A CCDC167 5'UTR 0.15 TCGA-FR-A726-01 6 37605165 37605165 G A MDGA1 Silent p.F949F 0.20 TCGA-FR-A726-01 6 37606007 37606007 G A MDGA1 Missense_Mutation p.P917L 0.28 tolerated(0.29) probably_damaging(0.999) TCGA-FR-A726-01 6 37631836 37631836 C T MDGA1 Silent p.V38V 0.18 TCGA-FR-A726-01 6 38749117 38749117 C T DNAH8 Missense_Mutation p.R526C 0.27 possibly_damaging(0.883) TCGA-FR-A726-01 6 38770974 38770974 C T DNAH8 Missense_Mutation p.A757V 0.21 benign(0.046) TCGA-FR-A726-01 6 38790617 38790617 C T DNAH8 Missense_Mutation p.S959F 0.12 benign(0.014) TCGA-FR-A726-01 6 38805730 38805730 G A DNAH8 Missense_Mutation p.D1243N 0.22 possibly_damaging(0.548) TCGA-FR-A726-01 6 38843379 38843379 C T DNAH8 Silent p.L2328L 0.24 TCGA-FR-A726-01 6 38850708 38850708 G A DNAH8 Silent p.K2410K 0.28 TCGA-FR-A726-01 6 38905782 38905782 G T DNAH8 Missense_Mutation p.V3649L 0.18 possibly_damaging(0.612) TCGA-FR-A726-01 6 39024250 39024250 G A GLP1R Silent p.E52E 0.50 TCGA-FR-A726-01 6 39159259 39159259 C T KCNK5 Missense_Mutation p.D303N 0.46 deleterious(0.04) probably_damaging(0.98) TCGA-FR-A726-01 6 39267454 39267454 G A KCNK17 Missense_Mutation p.L250F 0.25 deleterious(0.02) possibly_damaging(0.779) TCGA-FR-A726-01 6 39282879 39282879 C T KCNK16 3'UTR 0.05 TCGA-FR-A726-01 6 39328184 39328184 G A KIF6 Missense_Mutation p.A690V 0.50 tolerated(0.05) benign(0.147) TCGA-FR-A726-01 6 39563937 39563937 G A KIF6 Missense_Mutation p.H247Y 0.24 deleterious(0) probably_damaging(0.942) TCGA-FR-A726-01 6 39602722 39602722 T A KIF6 Missense_Mutation p.I138L 0.18 tolerated(0.19) benign(0.014) TCGA-FR-A726-01 6 40359725 40359725 C T LRFN2 Missense_Mutation p.G776E 0.22 tolerated(0.92) benign(0.012) TCGA-FR-A726-01 6 40359816 40359816 G A LRFN2 Missense_Mutation p.R746W 0.30 deleterious(0) probably_damaging(0.912) TCGA-FR-A726-01 6 40359999 40359999 C T LRFN2 Missense_Mutation p.G685R 0.34 tolerated(0.21) benign(0.05) TCGA-FR-A726-01 6 40360180 40360180 G A LRFN2 Silent p.S624S 0.22 TCGA-FR-A726-01 6 40360203 40360203 G A LRFN2 Missense_Mutation p.R617C 0.16 tolerated(0.07) benign(0.132) TCGA-FR-A726-01 6 40400544 40400544 G A LRFN2 Silent p.R103R 0.26 TCGA-FR-A726-01 6 40400607 40400607 G A LRFN2 Silent p.T82T 0.22 TCGA-FR-A726-01 6 4077643 4077643 C A FAM217A Silent p.G2G 0.12 TCGA-FR-A726-01 6 4077644 4077644 C T FAM217A Missense_Mutation p.G2E 0.12 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 6 41166166 41166166 G A TREML2 Silent p.G19G 0.25 TCGA-FR-A726-01 6 41185404 41185404 C T TREML3P RNA 0.41 TCGA-FR-A726-01 6 41196752 41196752 C T TREML4 Missense_Mutation p.L122F 0.17 tolerated(0.17) possibly_damaging(0.631) TCGA-FR-A726-01 6 41243940 41243940 G A TREM1 Silent p.L210L 0.23 TCGA-FR-A726-01 6 41304125 41304125 C T NCR2 Missense_Mutation p.S118F 0.24 tolerated(0.1) benign(0.316) TCGA-FR-A726-01 6 41552593 41552593 C T FOXP4 Silent p.A129A 0.23 TCGA-FR-A726-01 6 41652410 41652410 G A TFEB Missense_Mutation p.T453I 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A726-01 6 42034102 42034102 C T TAF8 Missense_Mutation p.S181F 0.37 deleterious(0) probably_damaging(0.962) TCGA-FR-A726-01 6 42232458 42232458 G A TRERF1 Missense_Mutation p.S540F 0.20 deleterious(0) possibly_damaging(0.485) TCGA-FR-A726-01 6 42236733 42236733 G A TRERF1 Missense_Mutation p.S199F 0.26 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-FR-A726-01 6 42236944 42236944 C T TRERF1 Missense_Mutation p.E129K 0.19 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-FR-A726-01 6 42690162 42690162 G A PRPH2 5'UTR 0.36 TCGA-FR-A726-01 6 42796398 42796398 C T GLTSCR1L Silent p.S109S 0.28 TCGA-FR-A726-01 6 42797680 42797680 C T GLTSCR1L Missense_Mutation p.P537S 0.20 tolerated(0.27) benign(0.015) TCGA-FR-A726-01 6 43172776 43172776 C T CUL9 Missense_Mutation p.R1519W 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 43194075 43194075 C T DNPH1 Silent p.Q85Q 0.21 TCGA-FR-A726-01 6 43226776 43226776 G A TTBK1 Silent p.G339G 0.21 TCGA-FR-A726-01 6 43226777 43226777 G A TTBK1 Missense_Mutation p.V340M 0.21 probably_damaging(0.976) TCGA-FR-A726-01 6 43226860 43226860 G A TTBK1 Silent p.Q367Q 0.08 TCGA-FR-A726-01 6 43266172 43266172 C T SLC22A7 Silent p.L26L 0.29 TCGA-FR-A726-01 6 43527934 43527934 G A XPO5 Missense_Mutation p.S401F 0.29 deleterious(0.02) benign(0.197) TCGA-FR-A726-01 6 43618134 43618134 C T RSPH9 Missense_Mutation p.L84F 0.23 deleterious(0) probably_damaging(0.934) TCGA-FR-A726-01 6 44121528 44121528 C T TMEM63B Silent p.A686A 0.28 TCGA-FR-A726-01 6 44137184 44137184 C T CAPN11 Silent p.F85F 0.16 TCGA-FR-A726-01 6 44148369 44148369 C T CAPN11 Silent p.F572F 0.45 TCGA-FR-A726-01 6 44219162 44219162 C T HSP90AB1 Silent p.I377I 0.24 TCGA-FR-A726-01 6 44224515 44224515 G A SLC35B2 Nonsense_Mutation p.R38* 0.18 TCGA-FR-A726-01 6 44233322 44233322 C T NFKBIE Missense_Mutation p.G60E 0.17 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FR-A726-01 6 44253958 44253958 G T TCTE1 Missense_Mutation p.L197I 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A726-01 6 44254197 44254197 G A TCTE1 Missense_Mutation p.P117L 0.25 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 6 44268929 44268929 G A AARS2 Silent p.P919P 0.24 TCGA-FR-A726-01 6 44310937 44310937 G A SPATS1 Silent p.R35R 0.16 TCGA-FR-A726-01 6 44310938 44310938 G A SPATS1 Missense_Mutation p.D36N 0.16 tolerated_low_confidence(0.08) benign(0.192) TCGA-FR-A726-01 6 46111251 46111251 C T ENPP4 Silent p.I412I 0.25 TCGA-FR-A726-01 6 46111588 46111588 C T ENPP4 3'UTR 0.27 TCGA-FR-A726-01 6 46214542 46214542 C T RCAN2 Missense_Mutation p.D172N 0.23 deleterious(0) benign(0.332) TCGA-FR-A726-01 6 46656826 46656826 G A TDRD6 Missense_Mutation p.G321S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 6 46657333 46657333 G A TDRD6 Missense_Mutation p.D490N 0.28 tolerated(0.14) probably_damaging(0.983) TCGA-FR-A726-01 6 46660763 46660763 C T TDRD6 Missense_Mutation p.P1633L 0.26 tolerated(0.14) possibly_damaging(0.679) TCGA-FR-A726-01 6 46661383 46661383 T G TDRD6 Missense_Mutation p.S1840A 0.27 tolerated(0.05) benign(0.314) TCGA-FR-A726-01 6 46669697 46669697 G A TDRD6 3'UTR 0.30 TCGA-FR-A726-01 6 46684213 46684213 G A PLA2G7 Missense_Mutation p.T95I 0.16 tolerated(0.11) possibly_damaging(0.891) TCGA-FR-A726-01 6 46766909 46766909 G A MEP1A Missense_Mutation p.D85N 0.25 deleterious(0.03) possibly_damaging(0.558) TCGA-FR-A726-01 6 46793085 46793085 G A MEP1A Silent p.L211L 0.07 TCGA-FR-A726-01 6 46793100 46793100 T G MEP1A Silent p.P216P 0.23 TCGA-FR-A726-01 6 46793148 46793148 C T MEP1A Silent p.I232I 0.24 TCGA-FR-A726-01 6 46826100 46826100 C T GPR116 Silent p.L1180L 0.54 TCGA-FR-A726-01 6 46826469 46826469 G A GPR116 Silent p.I1057I 0.07 TCGA-FR-A726-01 6 46974998 46974998 C T GPR110 Missense_Mutation p.D842N 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 46982557 46982557 C T GPR110 Missense_Mutation p.G263R 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 4716003 4716003 G A CDYL 5'UTR 0.36 TCGA-FR-A726-01 6 47251825 47251825 C T TNFRSF21 Silent p.V364V 0.24 TCGA-FR-A726-01 6 47253766 47253766 G A TNFRSF21 Missense_Mutation p.T221I 0.22 tolerated(0.14) benign(0.001) TCGA-FR-A726-01 6 47649965 47649965 C T GPR111 Missense_Mutation p.S557L 0.29 deleterious(0.01) benign(0.302) TCGA-FR-A726-01 6 47680330 47680330 C T GPR115 Nonsense_Mutation p.R180* 0.26 TCGA-FR-A726-01 6 47976401 47976401 G A PTCHD4 Silent p.S292S 0.27 TCGA-FR-A726-01 6 49427134 49427134 G A MUT Silent p.L16L 0.26 TCGA-FR-A726-01 6 49578814 49578814 G A RHAG Silent p.V330V 0.18 TCGA-FR-A726-01 6 49585792 49585792 C T RHAG Missense_Mutation p.E161K 0.25 tolerated(0.52) benign(0.049) TCGA-FR-A726-01 6 49667581 49667581 C T CRISP2 Silent p.T69T 0.33 TCGA-FR-A726-01 6 49703299 49703299 C T CRISP3 Nonsense_Mutation p.W88* 0.39 TCGA-FR-A726-01 6 49753752 49753752 C T PGK2 Nonsense_Mutation p.W383* 0.19 TCGA-FR-A726-01 6 49754541 49754541 C T PGK2 Silent p.E120E 0.21 TCGA-FR-A726-01 6 49937290 49937290 C T DEFB113 Missense_Mutation p.G17S 0.19 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FR-A726-01 6 4996477 4996477 G A RPP40 Missense_Mutation p.A246V 0.29 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 6 50683113 50683113 G A TFAP2D Silent p.G108G 0.22 TCGA-FR-A726-01 6 50683114 50683114 G A TFAP2D Missense_Mutation p.E109K 0.22 tolerated(0.53) benign(0.021) TCGA-FR-A726-01 6 50683171 50683171 G A TFAP2D Missense_Mutation p.D128N 0.18 tolerated(0.11) benign(0.086) TCGA-FR-A726-01 6 50786595 50786595 C A TFAP2B 5'UTR 0.16 TCGA-FR-A726-01 6 50791271 50791271 C T TFAP2B Missense_Mutation p.P78L 0.28 deleterious(0.05) benign(0.154) TCGA-FR-A726-01 6 50803856 50803856 G A TFAP2B Silent p.E228E 0.23 TCGA-FR-A726-01 6 51513909 51513909 G A PKHD1 Missense_Mutation p.P3762S 0.55 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 51910835 51910835 G A PKHD1 Silent p.S853S 0.45 TCGA-FR-A726-01 6 52141185 52141185 G A MCM3 Missense_Mutation p.R464C 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 52144263 52144263 A - MCM3 Frame_Shift_Del p.D267Efs*39 0.26 TCGA-FR-A726-01 6 52357177 52357177 G A EFHC1 3'UTR 0.18 TCGA-FR-A726-01 6 52701167 52701167 C T GSTA5 Splice_Site p.X47_splice 0.24 TCGA-FR-A726-01 6 52902770 52902770 G A ICK Silent p.S41S 0.30 TCGA-FR-A726-01 6 52902771 52902771 G A ICK Missense_Mutation p.S41F 0.30 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 6 52993581 52993581 C T GCM1 Missense_Mutation p.G245E 0.20 tolerated(0.17) benign(0.144) TCGA-FR-A726-01 6 52998885 52998885 G A GCM1 Missense_Mutation p.R105W 0.33 deleterious(0) possibly_damaging(0.689) TCGA-FR-A726-01 6 52999096 52999096 C T GCM1 Silent p.Q34Q 0.24 TCGA-FR-A726-01 6 54804573 54804573 C T FAM83B Silent p.S268S 0.23 TCGA-FR-A726-01 6 54805881 54805881 G T FAM83B Silent p.L704L 0.07 TCGA-FR-A726-01 6 54806276 54806276 C T FAM83B Missense_Mutation p.S836L 0.27 deleterious(0) possibly_damaging(0.656) TCGA-FR-A726-01 6 54806581 54806581 G A FAM83B Missense_Mutation p.E938K 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.18 deleterious(0) probably_damaging(0.934) TCGA-FR-A726-01 6 55147110 55147110 G A HCRTR2 Missense_Mutation p.R398Q 0.26 tolerated(0.06) benign(0.087) TCGA-FR-A726-01 6 55300354 55300354 C T HMGCLL1 3'UTR 0.36 TCGA-FR-A726-01 6 55922577 55922577 C T COL21A1 Missense_Mutation p.D918N 0.24 tolerated(0.65) unknown(0) TCGA-FR-A726-01 6 56006739 56006739 G A COL21A1 Missense_Mutation p.P493S 0.29 tolerated(0.05) probably_damaging(0.911) TCGA-FR-A726-01 6 56032941 56032941 C T COL21A1 Missense_Mutation p.G394E 0.25 tolerated(0.22) benign(0.141) TCGA-FR-A726-01 6 56471535 56471535 C A DST Intron 0.51 TCGA-FR-A726-01 6 57246850 57246850 G A PRIM2 Missense_Mutation p.D193N 0.10 tolerated(0.05) possibly_damaging(0.749) TCGA-FR-A726-01 6 57467196 57467196 G A PRIM2 3'UTR 0.08 TCGA-FR-A726-01 6 57512480 57512480 T A PRIM2 3'UTR 0.09 TCGA-FR-A726-01 6 6002595 6002595 G A NRN1 Missense_Mutation p.T64I 0.21 tolerated(0.09) benign(0.08) TCGA-FR-A726-01 6 6145795 6145795 C T F13A1 3'UTR 0.57 TCGA-FR-A726-01 6 6174943 6174943 G A F13A1 Silent p.T539T 0.22 TCGA-FR-A726-01 6 6197560 6197560 C T F13A1 Splice_Site p.X371_splice 0.19 TCGA-FR-A726-01 6 6224953 6224953 G A F13A1 Silent p.G313G 0.21 TCGA-FR-A726-01 6 62390762 62390762 G A KHDRBS2 3'UTR 0.33 TCGA-FR-A726-01 6 62390884 62390884 G A KHDRBS2 Missense_Mutation p.P345L 0.29 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 6 62611186 62611186 C T KHDRBS2 Missense_Mutation p.G192S 0.57 tolerated(0.1) benign(0.054) TCGA-FR-A726-01 6 6266847 6266847 C T F13A1 Missense_Mutation p.R172Q 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A726-01 6 6318877 6318877 G A F13A1 Silent p.T7T 0.23 TCGA-FR-A726-01 6 63990120 63990120 C T LGSN Missense_Mutation p.D446N 0.27 tolerated(0.42) benign(0.001) TCGA-FR-A726-01 6 64401764 64401764 A T PHF3 Missense_Mutation p.K776M 0.28 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 6 64401765 64401765 G A PHF3 Silent p.K776K 0.28 TCGA-FR-A726-01 6 69646544 69646544 G A BAI3 Silent p.R334R 0.26 TCGA-FR-A726-01 6 69646545 69646545 G A BAI3 Missense_Mutation p.V335I 0.26 tolerated(0.52) possibly_damaging(0.747) TCGA-FR-A726-01 6 70034864 70034864 G A BAI3 Missense_Mutation p.G972E 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 70064167 70064167 C T BAI3 Missense_Mutation p.P1168S 0.27 tolerated(0.07) benign(0.078) TCGA-FR-A726-01 6 70064183 70064183 C T BAI3 Missense_Mutation p.S1173F 0.62 deleterious(0) benign(0.216) TCGA-FR-A726-01 6 70878099 70878099 G A COL19A1 Missense_Mutation p.G845S 0.25 deleterious(0.05) probably_damaging(1) TCGA-FR-A726-01 6 70961982 70961982 C T COL9A1 Missense_Mutation p.G601R 0.30 probably_damaging(1) TCGA-FR-A726-01 6 70961983 70961983 C T COL9A1 Missense_Mutation p.M600I 0.31 benign(0.114) TCGA-FR-A726-01 6 70972963 70972963 C T COL9A1 Missense_Mutation p.G460E 0.75 probably_damaging(1) TCGA-FR-A726-01 6 71004230 71004230 G A COL9A1 Silent p.S112S 0.31 TCGA-FR-A726-01 6 71266490 71266490 C T FAM135A Silent p.S1422S 0.24 TCGA-FR-A726-01 6 71501396 71501396 C T SMAP1 Missense_Mutation p.S140F 0.26 deleterious(0.01) benign(0.005) TCGA-FR-A726-01 6 71567842 71567842 C T SMAP1 Silent p.G393G 0.30 TCGA-FR-A726-01 6 71567843 71567843 C T SMAP1 Missense_Mutation p.P394S 0.30 tolerated(0.09) benign(0.082) TCGA-FR-A726-01 6 73110333 73110333 G A RIMS1 Missense_Mutation p.D1666N 0.66 deleterious(0) benign(0.07) TCGA-FR-A726-01 6 7378879 7378879 G A CAGE1 Missense_Mutation p.P220S 0.21 tolerated(0.3) benign(0.426) TCGA-FR-A726-01 6 73905193 73905193 G A KCNQ5 3'UTR 0.37 TCGA-FR-A726-01 6 73919669 73919669 G A RP11-257K9.8 3'UTR 0.37 TCGA-FR-A726-01 6 74073352 74073352 G A KHDC3L Silent p.R141R 0.39 TCGA-FR-A726-01 6 74495127 74495127 C T CD109 Missense_Mutation p.P755L 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 7575639 7575639 G A DSP Missense_Mutation p.D850N 0.22 possibly_damaging(0.678) TCGA-FR-A726-01 6 7579663 7579663 G A DSP Silent p.E1080E 0.23 TCGA-FR-A726-01 6 75804880 75804880 G A COL12A1 Missense_Mutation p.P2865S 0.30 possibly_damaging(0.811) TCGA-FR-A726-01 6 7580765 7580765 G A DSP Missense_Mutation p.E1448K 0.28 probably_damaging(0.987) TCGA-FR-A726-01 6 7581061 7581061 C T DSP Silent p.S1546S 0.44 TCGA-FR-A726-01 6 7581754 7581754 G A DSP Silent p.R1777R 0.20 TCGA-FR-A726-01 6 7581755 7581755 G A DSP Missense_Mutation p.E1778K 0.21 benign(0.11) TCGA-FR-A726-01 6 75834000 75834000 G A COL12A1 Missense_Mutation p.S2232F 0.36 probably_damaging(0.999) TCGA-FR-A726-01 6 7585080 7585080 G A DSP Missense_Mutation p.D2529N 0.27 probably_damaging(0.995) TCGA-FR-A726-01 6 76023163 76023163 C T FILIP1 Missense_Mutation p.M795I 0.68 tolerated(0.96) benign(0.004) TCGA-FR-A726-01 6 76640689 76640689 C T IMPG1 Missense_Mutation p.G742R 0.23 tolerated(0.07) benign(0.132) TCGA-FR-A726-01 6 76744409 76744409 C T IMPG1 Missense_Mutation p.E133K 0.40 deleterious(0.03) possibly_damaging(0.907) TCGA-FR-A726-01 6 78172223 78172223 C T HTR1B Missense_Mutation p.E300K 0.04 tolerated(0.08) benign(0.326) TCGA-FR-A726-01 6 78172353 78172353 C T HTR1B Silent p.L256L 0.35 TCGA-FR-A726-01 6 7883319 7883319 G A TXNDC5 3'UTR 0.22 TCGA-FR-A726-01 6 79711730 79711730 A G PHIP Missense_Mutation p.F589L 0.29 deleterious(0) possibly_damaging(0.878) TCGA-FR-A726-01 6 8080164 8080164 C A EEF1E1 Missense_Mutation p.V162F 0.14 deleterious(0) possibly_damaging(0.89) TCGA-FR-A726-01 6 82459782 82459782 G A FAM46A Missense_Mutation p.S320F 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 6 83075533 83075533 C T TPBG Silent p.P285P 0.31 TCGA-FR-A726-01 6 83828646 83828646 C T DOPEY1 Missense_Mutation p.L274F 0.05 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 6 83847360 83847360 C T DOPEY1 Missense_Mutation p.S1200F 0.35 tolerated_low_confidence(0.05) benign(0.001) TCGA-FR-A726-01 6 83905712 83905712 C T RWDD2A Silent p.F200F 0.71 TCGA-FR-A726-01 6 83926232 83926232 C T ME1 Silent p.L511L 0.27 TCGA-FR-A726-01 6 84311139 84311139 G A SNAP91 Missense_Mutation p.S392F 0.23 deleterious(0.03) unknown(0) TCGA-FR-A726-01 6 84375275 84375275 G A SNAP91 Silent p.T52T 0.60 TCGA-FR-A726-01 6 84375276 84375276 G A SNAP91 Missense_Mutation p.T52I 0.60 deleterious(0.02) unknown(0) TCGA-FR-A726-01 6 85472431 85472431 G A TBX18 Missense_Mutation p.P110S 0.32 tolerated(0.2) benign(0.173) TCGA-FR-A726-01 6 87725347 87725347 C T HTR1E Silent p.L99L 0.74 TCGA-FR-A726-01 6 88170883 88170883 G A C6ORF165 Silent p.L546L 0.70 TCGA-FR-A726-01 6 89888648 89888648 C T GABRR1 Silent p.L427L 0.64 TCGA-FR-A726-01 6 89909137 89909137 G A GABRR1 Missense_Mutation p.P98S 0.08 deleterious(0.04) probably_damaging(1) TCGA-FR-A726-01 6 90398438 90398438 G A MDN1 Silent p.L3705L 0.29 TCGA-FR-A726-01 6 90432796 90432796 G A MDN1 Missense_Mutation p.R1949W 0.30 probably_damaging(1) TCGA-FR-A726-01 6 90604924 90604924 C T GJA10 Missense_Mutation p.S246F 0.39 tolerated(0.18) benign(0.284) TCGA-FR-A726-01 6 90642314 90642314 G A BACH2 Missense_Mutation p.P780L 0.39 tolerated(0.07) benign(0.021) TCGA-FR-A726-01 6 93967213 93967213 G A EPHA7 Silent p.F713F 0.24 TCGA-FR-A726-01 6 94120377 94120377 G A EPHA7 Missense_Mutation p.S225F 0.31 deleterious(0) possibly_damaging(0.694) TCGA-FR-A726-01 6 96651139 96651139 G A FUT9 Nonsense_Mutation p.W36* 0.27 TCGA-FR-A726-01 6 97246341 97246341 C T GPR63 3'UTR 0.30 TCGA-FR-A726-01 6 97629830 97629830 G A MMS22L Silent p.I778I 0.31 TCGA-FR-A726-01 7 100001862 100001862 C T ZCWPW1 Silent p.R419R 0.23 TCGA-FR-A726-01 7 100030883 100030883 T C MEPCE Intron 0.13 TCGA-FR-A726-01 7 100173924 100173924 G A LRCH4 Silent p.V525V 0.17 TCGA-FR-A726-01 7 100179403 100179403 C T LRCH4 Missense_Mutation p.E199K 0.23 deleterious(0.03) benign(0.196) TCGA-FR-A726-01 7 100184267 100184267 C T FBXO24 5'Flank 0.26 TCGA-FR-A726-01 7 100189438 100189438 C T FBXO24 Silent p.F195F 0.29 TCGA-FR-A726-01 7 100200290 100200290 C T PCOLCE Intron 0.14 TCGA-FR-A726-01 7 100238484 100238484 C T TFR2 Missense_Mutation p.G100S 0.18 deleterious(0) probably_damaging(0.957) TCGA-FR-A726-01 7 100349698 100349698 C T ZAN Missense_Mutation p.P657L 0.29 benign(0.328) TCGA-FR-A726-01 7 100349963 100349963 C T ZAN Silent p.P745P 0.22 TCGA-FR-A726-01 7 100350515 100350515 C T ZAN Silent p.I929I 0.21 TCGA-FR-A726-01 7 100421537 100421537 C T EPHB4 Missense_Mutation p.G47D 0.27 tolerated(0.17) probably_damaging(0.972) TCGA-FR-A726-01 7 100421538 100421538 C T EPHB4 Missense_Mutation p.G47S 0.26 tolerated(0.32) possibly_damaging(0.566) TCGA-FR-A726-01 7 100452326 100452326 C T SLC12A9 Missense_Mutation p.S89F 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 100491845 100491845 G A ACHE Silent p.P3P 0.29 TCGA-FR-A726-01 7 100551763 100551763 G A MUC3A Missense_Mutation p.A172T 0.15 tolerated(0.81) benign(0.004) TCGA-FR-A726-01 7 100551777 100551777 C T MUC3A Silent p.I176I 0.14 TCGA-FR-A726-01 7 100552258 100552258 G A MUC3A Missense_Mutation p.D337N 0.11 tolerated(0.07) benign(0.34) TCGA-FR-A726-01 7 100676123 100676123 C T MUC17 Missense_Mutation p.P476S 0.24 probably_damaging(0.979) TCGA-FR-A726-01 7 100677132 100677132 C T MUC17 Missense_Mutation p.P812L 0.22 unknown(0) TCGA-FR-A726-01 7 100681847 100681847 G A MUC17 Missense_Mutation p.D2384N 0.20 unknown(0) TCGA-FR-A726-01 7 100684779 100684779 C T MUC17 Missense_Mutation p.S3361F 0.26 possibly_damaging(0.903) TCGA-FR-A726-01 7 100685772 100685772 G A MUC17 Missense_Mutation p.G3692E 0.24 benign(0.01) TCGA-FR-A726-01 7 100686896 100686896 C T MUC17 Missense_Mutation p.P4067S 0.24 benign(0) TCGA-FR-A726-01 7 100732953 100732953 C T TRIM56 3'UTR 0.29 TCGA-FR-A726-01 7 100775237 100775237 G A SERPINE1 Missense_Mutation p.G196D 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 100777068 100777068 G A SERPINE1 Missense_Mutation p.E265K 0.25 tolerated(0.09) benign(0.02) TCGA-FR-A726-01 7 100839558 100839558 C T MOGAT3 Missense_Mutation p.G261S 0.15 tolerated(0.12) possibly_damaging(0.467) TCGA-FR-A726-01 7 100855932 100855932 G A PLOD3 Missense_Mutation p.P295L 0.26 tolerated(0.72) benign(0.001) TCGA-FR-A726-01 7 100859532 100859532 G A PLOD3 Silent p.F138F 0.22 TCGA-FR-A726-01 7 100861383 100861383 G A ZNHIT1 5'UTR 0.20 TCGA-FR-A726-01 7 100883131 100883131 G A FIS1 Silent p.L139L 0.24 TCGA-FR-A726-01 7 1015157 1015157 C T COX19 5'UTR 0.32 TCGA-FR-A726-01 7 101845091 101845091 C T CUX1 Silent p.S849S 0.32 TCGA-FR-A726-01 7 102087093 102087093 C T ORAI2 Missense_Mutation p.P120L 0.27 deleterious(0) possibly_damaging(0.888) TCGA-FR-A726-01 7 102553563 102553563 G A FBXL13 Silent p.L326L 0.15 TCGA-FR-A726-01 7 1028300 1028300 G A CYP2W1 Missense_Mutation p.A439T 0.42 deleterious(0) possibly_damaging(0.489) TCGA-FR-A726-01 7 103131239 103131239 G A RELN Missense_Mutation p.P3161S 0.31 deleterious(0) benign(0.034) TCGA-FR-A726-01 7 103136296 103136296 C T RELN Silent p.R3081R 0.14 TCGA-FR-A726-01 7 103243903 103243903 G A RELN Missense_Mutation p.P1061S 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-FR-A726-01 7 103275927 103275927 C T RELN Missense_Mutation p.G804R 0.18 deleterious(0) probably_damaging(0.941) TCGA-FR-A726-01 7 103276873 103276873 G A RELN Silent p.S704S 0.16 TCGA-FR-A726-01 7 103293055 103293055 G A RELN Missense_Mutation p.S569F 0.28 deleterious(0) possibly_damaging(0.665) TCGA-FR-A726-01 7 103474025 103474025 G A RELN Silent p.I144I 0.31 TCGA-FR-A726-01 7 103629713 103629713 G A RELN Missense_Mutation p.P31S 0.20 tolerated(0.18) benign(0.021) TCGA-FR-A726-01 7 105122873 105122873 C T PUS7 Missense_Mutation p.R312K 0.14 tolerated(0.27) benign(0.305) TCGA-FR-A726-01 7 105658307 105658307 G A CDHR3 Missense_Mutation p.G481E 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 105658335 105658335 C T CDHR3 Silent p.L490L 0.21 TCGA-FR-A726-01 7 105660897 105660897 G A CDHR3 Missense_Mutation p.D578N 0.35 tolerated(0.15) possibly_damaging(0.848) TCGA-FR-A726-01 7 105660969 105660969 T A CDHR3 Missense_Mutation p.F602I 0.09 deleterious(0) possibly_damaging(0.521) TCGA-FR-A726-01 7 106509660 106509660 C T PIK3CG Missense_Mutation p.R552C 0.29 deleterious(0.04) possibly_damaging(0.892) TCGA-FR-A726-01 7 106513235 106513235 C T PIK3CG Silent p.F713F 0.24 TCGA-FR-A726-01 7 106522576 106522576 G A PIK3CG Missense_Mutation p.M851I 0.19 deleterious(0) possibly_damaging(0.75) TCGA-FR-A726-01 7 107234427 107234427 C T BCAP29 Missense_Mutation p.S74F 0.18 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 7 107236423 107236423 G A BCAP29 Missense_Mutation p.M152I 0.15 deleterious(0.03) benign(0.132) TCGA-FR-A726-01 7 107601761 107601761 G A LAMB1 Missense_Mutation p.P667S 0.23 tolerated(0.18) possibly_damaging(0.689) TCGA-FR-A726-01 7 107626521 107626521 G A LAMB1 Missense_Mutation p.R208C 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 107664513 107664513 C T LAMB4 Missense_Mutation p.E1753K 0.21 tolerated(0.39) benign(0.02) TCGA-FR-A726-01 7 107688398 107688398 G A LAMB4 Silent p.S1427S 0.19 TCGA-FR-A726-01 7 107720225 107720225 C T LAMB4 Missense_Mutation p.E570K 0.37 tolerated(0.33) benign(0.005) TCGA-FR-A726-01 7 107824959 107824959 G A NRCAM Missense_Mutation p.S712F 0.28 deleterious(0) possibly_damaging(0.851) TCGA-FR-A726-01 7 107849893 107849893 G A NRCAM Silent p.I349I 0.22 TCGA-FR-A726-01 7 108524071 108524071 C T C7orf66 Missense_Mutation p.G114E 0.19 tolerated_low_confidence(1) benign(0) TCGA-FR-A726-01 7 111540575 111540575 G A DOCK4 Silent p.G445G 0.13 TCGA-FR-A726-01 7 112097100 112097100 C T IFRD1 Intron 0.18 TCGA-FR-A726-01 7 112462278 112462278 G A C7orf60 Missense_Mutation p.L247F 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 112724345 112724345 C G GPR85 Missense_Mutation p.M144I 0.10 tolerated(0.38) benign(0.05) TCGA-FR-A726-01 7 113518068 113518068 C T PPP1R3A Missense_Mutation p.E1027K 0.24 tolerated(0.17) benign(0.019) TCGA-FR-A726-01 7 113522352 113522352 G A PPP1R3A Missense_Mutation p.S269L 0.27 tolerated(0.08) benign(0.015) TCGA-FR-A726-01 7 113558846 113558846 G A PPP1R3A Missense_Mutation p.S69F 0.19 deleterious(0.01) possibly_damaging(0.615) TCGA-FR-A726-01 7 114282576 114282576 C T FOXP2 Missense_Mutation p.S321F 0.22 deleterious(0) unknown(0) TCGA-FR-A726-01 7 115581133 115581133 G A TFEC Intron 0.60 TCGA-FR-A726-01 7 115581838 115581838 G A TFEC Intron 0.15 TCGA-FR-A726-01 7 11630187 11630187 C T THSD7A Silent p.Q451Q 0.51 TCGA-FR-A726-01 7 11676405 11676405 C T THSD7A Missense_Mutation p.R125K 0.35 tolerated(0.23) benign(0.003) TCGA-FR-A726-01 7 11676536 11676536 C T THSD7A Silent p.T81T 0.09 TCGA-FR-A726-01 7 116937679 116937679 C T WNT2 Silent p.R280R 0.20 TCGA-FR-A726-01 7 116937765 116937765 C T WNT2 Missense_Mutation p.G252S 0.34 tolerated(0.07) probably_damaging(1) TCGA-FR-A726-01 7 116960654 116960654 C T WNT2 Missense_Mutation p.D93N 0.35 tolerated(0.25) benign(0.272) TCGA-FR-A726-01 7 116960655 116960655 C T WNT2 Silent p.R92R 0.36 TCGA-FR-A726-01 7 117282567 117282567 G A CFTR Missense_Mutation p.G1265R 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 117368300 117368300 G A CTTNBP2 Missense_Mutation p.P1300S 0.05 tolerated(0.07) benign(0.011) TCGA-FR-A726-01 7 117400742 117400742 C T CTTNBP2 Silent p.R973R 0.05 TCGA-FR-A726-01 7 117431546 117431546 G C CTTNBP2 Missense_Mutation p.D568E 0.23 tolerated(0.13) benign(0.115) TCGA-FR-A726-01 7 117432246 117432246 G A CTTNBP2 Missense_Mutation p.P335L 0.30 deleterious(0) possibly_damaging(0.603) TCGA-FR-A726-01 7 117864830 117864830 G A ANKRD7 5'UTR 0.24 TCGA-FR-A726-01 7 119914505 119914505 G A KCND2 5'UTR 0.32 TCGA-FR-A726-01 7 119915063 119915063 C T KCND2 Missense_Mutation p.P126L 0.29 deleterious(0.03) probably_damaging(0.957) TCGA-FR-A726-01 7 120382645 120382645 G A KCND2 Missense_Mutation p.E486K 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FR-A726-01 7 120591176 120591176 C T ING3 Intron 0.21 TCGA-FR-A726-01 7 120978974 120978974 G A WNT16 Missense_Mutation p.G225R 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 121636451 121636451 C T PTPRZ1 Missense_Mutation p.P315L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 121651245 121651245 C T PTPRZ1 Silent p.T715T 0.19 TCGA-FR-A726-01 7 121733191 121733191 G A AASS Silent p.H559H 0.52 TCGA-FR-A726-01 7 121943751 121943751 A C FEZF1 Missense_Mutation p.D247E 0.30 tolerated(0.77) benign(0.001) TCGA-FR-A726-01 7 121944227 121944227 C T FEZF1 Missense_Mutation p.G89R 0.27 tolerated(0.51) possibly_damaging(0.708) TCGA-FR-A726-01 7 122047633 122047633 G A CADPS2 Missense_Mutation p.P903S 0.23 deleterious(0) probably_damaging(0.918) TCGA-FR-A726-01 7 122091514 122091514 C T CADPS2 Silent p.G734G 0.12 TCGA-FR-A726-01 7 122091515 122091515 C T CADPS2 Missense_Mutation p.G734E 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-FR-A726-01 7 122261661 122261661 C T CADPS2 Silent p.S326S 0.20 TCGA-FR-A726-01 7 122303581 122303581 C T CADPS2 Missense_Mutation p.G166R 0.16 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 7 122338584 122338584 T C RNF133 Missense_Mutation p.Y130C 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 122338606 122338606 C T RNF133 Missense_Mutation p.G123R 0.23 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 7 122339045 122339045 G A RNF133 5'UTR 0.19 TCGA-FR-A726-01 7 122342704 122342704 C T RNF148 Missense_Mutation p.G34E 0.15 deleterious(0) possibly_damaging(0.726) TCGA-FR-A726-01 7 122635690 122635690 C T TAS2R16 5'UTR 0.26 TCGA-FR-A726-01 7 122755446 122755446 G A SLC13A1 3'UTR 0.17 TCGA-FR-A726-01 7 122755667 122755667 C T SLC13A1 Missense_Mutation p.V565I 0.24 tolerated(0.64) probably_damaging(0.951) TCGA-FR-A726-01 7 122839998 122839998 C T SLC13A1 Translation_Start_Site p.M1? 0.13 deleterious(0.01) possibly_damaging(0.775) TCGA-FR-A726-01 7 123092877 123092877 C A IQUB Missense_Mutation p.G766C 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.711) TCGA-FR-A726-01 7 123150031 123150031 G A IQUB Silent p.T152T 0.32 TCGA-FR-A726-01 7 123269303 123269303 C T ASB15 Missense_Mutation p.P419S 0.27 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 7 123302743 123302743 G A LMOD2 Missense_Mutation p.G368E 0.28 tolerated(0.4) possibly_damaging(0.807) TCGA-FR-A726-01 7 123324406 123324406 T G WASL 3'UTR 0.35 TCGA-FR-A726-01 7 123508303 123508303 G A HYAL4 5'UTR 0.23 TCGA-FR-A726-01 7 123517147 123517147 C T HYAL4 Missense_Mutation p.P462S 0.29 tolerated(1) benign(0.001) TCGA-FR-A726-01 7 126079100 126079100 G A GRM8 3'UTR 0.19 TCGA-FR-A726-01 7 126173816 126173816 G A GRM8 Silent p.R540R 0.25 TCGA-FR-A726-01 7 126173867 126173867 C T GRM8 Silent p.G523G 0.22 TCGA-FR-A726-01 7 127251023 127251023 G A PAX4 3'UTR 0.31 TCGA-FR-A726-01 7 127732120 127732120 C T SND1 3'UTR 0.24 TCGA-FR-A726-01 7 128033064 128033064 G A IMPDH1 Silent p.Y599Y 0.20 TCGA-FR-A726-01 7 128489587 128489587 C T FLNC Silent p.I1718I 0.23 TCGA-FR-A726-01 7 128807733 128807733 C T TSPAN33 3'UTR 0.18 TCGA-FR-A726-01 7 128845608 128845608 G A SMO Missense_Mutation p.R302K 0.15 deleterious(0) possibly_damaging(0.883) TCGA-FR-A726-01 7 129841753 129841753 G A TMEM209 Silent p.S170S 0.32 TCGA-FR-A726-01 7 129909541 129909541 G A CPA2 Silent p.G62G 0.07 TCGA-FR-A726-01 7 130025110 130025110 C T CPA1 Missense_Mutation p.S304F 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 130353691 130353691 C T TSGA13 3'UTR 0.29 TCGA-FR-A726-01 7 131815089 131815089 G A PLXNA4 3'UTR 0.30 TCGA-FR-A726-01 7 131817832 131817832 G A PLXNA4 Silent p.S1855S 0.16 TCGA-FR-A726-01 7 131844321 131844321 G A PLXNA4 Missense_Mutation p.T1524I 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A726-01 7 131849022 131849022 G A PLXNA4 Missense_Mutation p.S1460F 0.15 deleterious(0.01) possibly_damaging(0.843) TCGA-FR-A726-01 7 131865427 131865427 C T PLXNA4 Missense_Mutation p.G1186E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 131866250 131866250 G A PLXNA4 Silent p.L1128L 0.18 TCGA-FR-A726-01 7 131883326 131883326 C T PLXNA4 Missense_Mutation p.E886K 0.25 tolerated(0.88) benign(0.42) TCGA-FR-A726-01 7 132193185 132193185 C T PLXNA4 Missense_Mutation p.E90K 0.32 tolerated(0.08) benign(0.05) TCGA-FR-A726-01 7 133848188 133848188 C T LRGUK Silent p.L279L 0.29 TCGA-FR-A726-01 7 134216719 134216719 G A AKR1B10 Silent p.K98K 0.22 TCGA-FR-A726-01 7 134216720 134216720 G A AKR1B10 Missense_Mutation p.D99N 0.22 tolerated(0.39) benign(0.085) TCGA-FR-A726-01 7 134222401 134222401 A T AKR1B10 Missense_Mutation p.K243N 0.27 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 7 134363754 134363754 C T BPGM Nonsense_Mutation p.Q251* 0.19 TCGA-FR-A726-01 7 134896313 134896313 G A WDR91 5'Flank 0.29 TCGA-FR-A726-01 7 134925346 134925346 G A STRA8 Missense_Mutation p.E46K 0.22 tolerated(0.15) benign(0.021) TCGA-FR-A726-01 7 136587915 136587915 G A CHRM2 Intron 0.25 TCGA-FR-A726-01 7 136700038 136700038 G A CHRM2 Missense_Mutation p.M142I 0.20 tolerated(0.92) benign(0.01) TCGA-FR-A726-01 7 136700556 136700556 C T CHRM2 Missense_Mutation p.S315F 0.20 tolerated(0.06) benign(0.195) TCGA-FR-A726-01 7 136700748 136700748 C T CHRM2 Missense_Mutation p.P379L 0.26 tolerated(0.4) benign(0.012) TCGA-FR-A726-01 7 136700977 136700977 C T CHRM2 Silent p.L455L 0.30 TCGA-FR-A726-01 7 137075834 137075834 G C DGKI 3'UTR 0.19 TCGA-FR-A726-01 7 137080421 137080421 C T DGKI Missense_Mutation p.A1002T 0.14 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 137255981 137255981 G A DGKI Silent p.F629F 0.16 TCGA-FR-A726-01 7 137263045 137263045 G A DGKI Missense_Mutation p.R557C 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 138270671 138270671 C T TRIM24 3'UTR 0.29 TCGA-FR-A726-01 7 138281185 138281185 C T SVOPL Missense_Mutation p.E482K 0.32 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 7 138440508 138440508 G A ATP6V0A4 Missense_Mutation p.P248S 0.28 deleterious(0.02) benign(0.192) TCGA-FR-A726-01 7 138455891 138455891 C T ATP6V0A4 Silent p.L34L 0.05 TCGA-FR-A726-01 7 138588373 138588373 C T KIAA1549 Nonsense_Mutation p.W1210* 0.29 TCGA-FR-A726-01 7 138601668 138601668 C T KIAA1549 Missense_Mutation p.G902S 0.33 tolerated(1) benign(0.001) TCGA-FR-A726-01 7 138602377 138602377 G A KIAA1549 Silent p.P665P 0.25 TCGA-FR-A726-01 7 138602586 138602586 G A KIAA1549 Missense_Mutation p.P596S 0.40 tolerated(0.08) benign(0.043) TCGA-FR-A726-01 7 138602964 138602964 C T KIAA1549 Missense_Mutation p.D470N 0.21 deleterious(0.02) possibly_damaging(0.848) TCGA-FR-A726-01 7 138603246 138603246 C T KIAA1549 Missense_Mutation p.D376N 0.33 tolerated(0.13) possibly_damaging(0.698) TCGA-FR-A726-01 7 138604135 138604135 G A KIAA1549 Silent p.L79L 0.19 TCGA-FR-A726-01 7 138713578 138713578 G A ZC3HAV1L Silent p.S210S 0.24 TCGA-FR-A726-01 7 138764589 138764589 C T ZC3HAV1 Silent p.T366T 0.22 TCGA-FR-A726-01 7 138764808 138764808 G A ZC3HAV1 Silent p.L293L 0.24 TCGA-FR-A726-01 7 138946060 138946060 C T UBN2 Missense_Mutation p.S323F 0.27 deleterious(0.01) benign(0.424) TCGA-FR-A726-01 7 138968739 138968739 C T UBN2 Missense_Mutation p.P1030S 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A726-01 7 139305155 139305155 G A HIPK2 Missense_Mutation p.H592Y 0.35 deleterious(0) benign(0.192) TCGA-FR-A726-01 7 139316467 139316467 G A HIPK2 Missense_Mutation p.P370S 0.15 deleterious(0.01) possibly_damaging(0.77) TCGA-FR-A726-01 7 139316468 139316468 G A HIPK2 Silent p.A369A 0.16 TCGA-FR-A726-01 7 139824437 139824437 G A KDM7A Silent p.T345T 0.28 TCGA-FR-A726-01 7 140111659 140111659 C T RAB19 Intron 0.10 TCGA-FR-A726-01 7 140111794 140111794 A G RAB19 Missense_Mutation p.I108V 0.12 tolerated(1) benign(0.001) TCGA-FR-A726-01 7 140454029 140454029 A G BRAF Silent p.L567L 0.10 TCGA-FR-A726-01 7 141362393 141362393 C T KIAA1147 3'UTR 0.23 TCGA-FR-A726-01 7 141408491 141408491 T G WEE2 5'UTR 0.19 TCGA-FR-A726-01 7 141418885 141418885 G A WEE2 Missense_Mutation p.R200Q 0.33 tolerated(0.16) benign(0.041) TCGA-FR-A726-01 7 141424967 141424967 C T WEE2 Missense_Mutation p.L455F 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 141536104 141536104 C T PRSS37 3'UTR 0.24 TCGA-FR-A726-01 7 141539241 141539241 C T PRSS37 Missense_Mutation p.D25N 0.29 tolerated(1) probably_damaging(0.993) TCGA-FR-A726-01 7 141618736 141618736 G A OR9A4 Missense_Mutation p.E21K 0.26 tolerated(0.23) benign(0.005) TCGA-FR-A726-01 7 141631569 141631569 G A CLEC5A Missense_Mutation p.R135C 0.06 tolerated(0.08) possibly_damaging(0.598) TCGA-FR-A726-01 7 141734165 141734165 G A MGAM Silent p.A591A 0.24 TCGA-FR-A726-01 7 141734166 141734166 G A MGAM Missense_Mutation p.V592I 0.24 tolerated(1) benign(0.001) TCGA-FR-A726-01 7 141734510 141734510 C T MGAM Silent p.L610L 0.25 TCGA-FR-A726-01 7 141734530 141734530 G T MGAM Silent p.A616A 0.31 TCGA-FR-A726-01 7 141740594 141740594 C T MGAM Nonsense_Mutation p.R816* 0.25 TCGA-FR-A726-01 7 141764305 141764305 G A MGAM Silent p.Q1489Q 0.44 TCGA-FR-A726-01 7 141765201 141765201 C T MGAM Silent p.G1517G 0.17 TCGA-FR-A726-01 7 141765202 141765202 C T MGAM Missense_Mutation p.R1518C 0.18 deleterious(0) possibly_damaging(0.868) TCGA-FR-A726-01 7 141794574 141794574 C T MGAM Nonsense_Mutation p.Q1561* 0.17 TCGA-FR-A726-01 7 141896589 141896589 C T RP11-1220K2.2 Silent p.S1535S 0.17 TCGA-FR-A726-01 7 142000981 142000981 C T TRBV2 5'UTR 0.26 TCGA-FR-A726-01 7 142032056 142032056 C T TRBV7-1 Silent p.L6L 0.18 TCGA-FR-A726-01 7 142119915 142119915 G A TRBV7-7 Silent p.F84F 0.18 TCGA-FR-A726-01 7 142131459 142131459 G A TRBV5-6 Missense_Mutation p.A99V 0.17 tolerated(0.29) benign(0.024) TCGA-FR-A726-01 7 142131491 142131491 G A TRBV5-6 Silent p.F88F 0.19 TCGA-FR-A726-01 7 142149034 142149034 G A TRBV5-5 Silent p.F79F 0.20 TCGA-FR-A726-01 7 142239777 142239777 C T TRBV9 Missense_Mutation p.G35R 0.39 tolerated(0.11) benign(0.443) TCGA-FR-A726-01 7 142240017 142240017 G A TRBV9 5'UTR 0.29 TCGA-FR-A726-01 7 142250773 142250773 C T TRBV6-4 Missense_Mutation p.D92N 0.29 tolerated(1) benign(0.006) TCGA-FR-A726-01 7 142326464 142326464 C T TRBV19 5'UTR 0.28 TCGA-FR-A726-01 7 142326847 142326847 G A TRBV19 Missense_Mutation p.D49N 0.15 tolerated(0.42) benign(0.029) TCGA-FR-A726-01 7 142364606 142364606 G A TRBV24-1 Missense_Mutation p.D81N 0.24 tolerated(0.23) benign(0.029) TCGA-FR-A726-01 7 142364609 142364609 G A TRBV24-1 Missense_Mutation p.G82R 0.23 tolerated(0.08) possibly_damaging(0.831) TCGA-FR-A726-01 7 142423617 142423617 G A TRBV27 Silent p.R91R 0.23 TCGA-FR-A726-01 7 142459700 142459700 G A PRSS1 Silent p.K92K 0.25 TCGA-FR-A726-01 7 142459748 142459748 C T PRSS1 Silent p.I108I 0.20 TCGA-FR-A726-01 7 142494556 142494556 C T TRBJ2-3 Missense_Mutation p.P9L 0.45 benign(0.079) TCGA-FR-A726-01 7 142494931 142494931 C T TRBJ2-6 Missense_Mutation p.A4V 0.19 unknown(0) TCGA-FR-A726-01 7 142494932 142494932 C T TRBJ2-6 Silent p.A4A 0.20 TCGA-FR-A726-01 7 142498994 142498994 C T TRBC2 Missense_Mutation p.R91C 0.14 deleterious(0.01) probably_damaging(0.934) TCGA-FR-A726-01 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.20 TCGA-FR-A726-01 7 142499093 142499093 G A TRBC2 Missense_Mutation p.E124K 0.10 tolerated(0.14) benign(0.31) TCGA-FR-A726-01 7 142510295 142510295 C T TRBV30 Missense_Mutation p.G104D 0.30 deleterious(0) probably_damaging(0.98) TCGA-FR-A726-01 7 142563789 142563789 C T EPHB6 Missense_Mutation p.R393W 0.15 deleterious(0.01) possibly_damaging(0.67) TCGA-FR-A726-01 7 142605761 142605761 G A TRPV5 Silent p.I703I 0.24 TCGA-FR-A726-01 7 142606661 142606661 G A TRPV5 Silent p.F630F 0.24 TCGA-FR-A726-01 7 142606700 142606700 C T TRPV5 Silent p.G617G 0.39 TCGA-FR-A726-01 7 142625886 142625886 G A TRPV5 Missense_Mutation p.S221F 0.22 deleterious(0) possibly_damaging(0.904) TCGA-FR-A726-01 7 142625936 142625936 G A TRPV5 Silent p.I204I 0.07 TCGA-FR-A726-01 7 142626578 142626578 A G TRPV5 Silent p.S144S 0.11 TCGA-FR-A726-01 7 142636602 142636602 G A C7orf34 5'Flank 0.40 TCGA-FR-A726-01 7 142658511 142658511 C T KEL Silent p.L53L 0.24 TCGA-FR-A726-01 7 142749488 142749488 C T OR6V1 Silent p.S17S 0.33 TCGA-FR-A726-01 7 142750017 142750017 G A OR6V1 Missense_Mutation p.E194K 0.31 deleterious(0.03) probably_damaging(0.978) TCGA-FR-A726-01 7 142759842 142759842 G A OR6W1P RNA 0.15 TCGA-FR-A726-01 7 142759843 142759843 G A OR6W1P RNA 0.15 TCGA-FR-A726-01 7 142836720 142836720 C T PIP Silent p.I142I 0.20 TCGA-FR-A726-01 7 142989531 142989531 C T CASP2 Missense_Mutation p.L122F 0.06 tolerated(0.39) benign(0.009) TCGA-FR-A726-01 7 143029932 143029932 T C CLCN1 Missense_Mutation p.V456A 0.35 deleterious(0.01) probably_damaging(0.93) TCGA-FR-A726-01 7 143048896 143048896 C T CLCN1 Silent p.S935S 0.27 TCGA-FR-A726-01 7 143048897 143048897 C T CLCN1 Missense_Mutation p.P936S 0.26 tolerated_low_confidence(0.13) benign(0.004) TCGA-FR-A726-01 7 143054043 143054043 G A FAM131B Missense_Mutation p.S228L 0.25 tolerated(0.37) probably_damaging(0.998) TCGA-FR-A726-01 7 143056094 143056094 G A FAM131B Missense_Mutation p.H98Y 0.29 deleterious(0) probably_damaging(0.92) TCGA-FR-A726-01 7 143095044 143095044 G A EPHA1 Silent p.S528S 0.29 TCGA-FR-A726-01 7 143140722 143140722 G C TAS2R60 Missense_Mutation p.L59F 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 143141175 143141175 C T TAS2R60 Silent p.F210F 0.30 TCGA-FR-A726-01 7 143141243 143141243 G A TAS2R60 Missense_Mutation p.G233E 0.36 tolerated(0.06) possibly_damaging(0.828) TCGA-FR-A726-01 7 143175582 143175582 C T TAS2R41 Missense_Mutation p.S206F 0.15 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 7 143453381 143453381 G A CTAGE6 Silent p.S457S 0.08 TCGA-FR-A726-01 7 143573390 143573390 G A FAM115A Silent p.I104I 0.23 TCGA-FR-A726-01 7 143632848 143632848 G A OR2F2 Missense_Mutation p.D175N 0.22 tolerated(1) benign(0.152) TCGA-FR-A726-01 7 143633243 143633243 G A OR2F2 Silent p.E306E 0.30 TCGA-FR-A726-01 7 143657345 143657345 C T OR2F1 Silent p.F94F 0.04 TCGA-FR-A726-01 7 143657528 143657528 C T OR2F1 Silent p.S155S 0.30 TCGA-FR-A726-01 7 143701532 143701532 C T OR6B1 Missense_Mutation p.S148F 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 143701623 143701623 C T OR6B1 Silent p.F178F 0.25 TCGA-FR-A726-01 7 143701716 143701716 C T OR6B1 Silent p.F209F 0.17 TCGA-FR-A726-01 7 143772113 143772113 G A OR2A25 Silent p.K267K 0.04 TCGA-FR-A726-01 7 143792671 143792671 C T OR2A12 Silent p.V157V 0.33 TCGA-FR-A726-01 7 143807150 143807150 G A OR2A2 Missense_Mutation p.E159K 0.24 deleterious(0) benign(0.002) TCGA-FR-A726-01 7 143807483 143807483 G A OR2A2 Missense_Mutation p.E270K 0.20 tolerated(0.46) benign(0.019) TCGA-FR-A726-01 7 143807575 143807575 C T OR2A2 Silent p.L300L 0.18 TCGA-FR-A726-01 7 143826558 143826558 C T OR2A14 Missense_Mutation p.S118F 0.22 deleterious(0) benign(0.371) TCGA-FR-A726-01 7 143826993 143826993 C T OR2A14 Missense_Mutation p.S263F 0.20 deleterious(0) probably_damaging(0.962) TCGA-FR-A726-01 7 143885443 143885443 G A ARHGEF35 Missense_Mutation p.P12S 0.27 tolerated(0.28) benign(0.007) TCGA-FR-A726-01 7 143955920 143955920 C T OR2A7 Missense_Mutation p.E268K 0.14 deleterious(0.04) possibly_damaging(0.731) TCGA-FR-A726-01 7 143956221 143956221 G A OR2A7 Silent p.F167F 0.09 TCGA-FR-A726-01 7 143956724 143956724 C T OR2A7 5'UTR 0.13 TCGA-FR-A726-01 7 144015410 144015410 C A OR2A1 Missense_Mutation p.L65M 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 144015451 144015451 C T OR2A1 Silent p.P78P 0.13 TCGA-FR-A726-01 7 144060471 144060471 G A ARHGEF5 Missense_Mutation p.E237K 0.17 tolerated(0.1) benign(0.007) TCGA-FR-A726-01 7 144096152 144096152 G A NOBOX Missense_Mutation p.P454S 0.46 deleterious(0) possibly_damaging(0.788) TCGA-FR-A726-01 7 144098451 144098451 G A NOBOX Missense_Mutation p.P178S 0.20 tolerated(0.06) benign(0.22) TCGA-FR-A726-01 7 144098647 144098647 C T NOBOX Silent p.E112E 0.33 TCGA-FR-A726-01 7 144101650 144101650 G A NOBOX Missense_Mutation p.S70L 0.25 deleterious_low_confidence(0) benign(0.013) TCGA-FR-A726-01 7 144345904 144345904 G A TPK1 Missense_Mutation p.T85I 0.21 tolerated(0.19) benign(0.001) TCGA-FR-A726-01 7 14613956 14613956 C T DGKB Missense_Mutation p.E552K 0.33 deleterious(0.03) possibly_damaging(0.904) TCGA-FR-A726-01 7 146741005 146741005 C T CNTNAP2 Missense_Mutation p.P137S 0.12 tolerated(0.76) benign(0.028) TCGA-FR-A726-01 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.19 deleterious(0) possibly_damaging(0.466) TCGA-FR-A726-01 7 146997283 146997283 G A CNTNAP2 Missense_Mutation p.E467K 0.22 tolerated(0.28) benign(0.065) TCGA-FR-A726-01 7 147259234 147259234 C T CNTNAP2 Silent p.I594I 0.19 TCGA-FR-A726-01 7 147336399 147336399 G A CNTNAP2 Splice_Site p.X700_splice 0.29 TCGA-FR-A726-01 7 147844655 147844655 C T CNTNAP2 Missense_Mutation p.P876L 0.20 tolerated(0.08) benign(0.204) TCGA-FR-A726-01 7 147926804 147926804 G A CNTNAP2 Missense_Mutation p.R1105K 0.22 tolerated(1) benign(0.013) TCGA-FR-A726-01 7 148080939 148080939 C T CNTNAP2 Missense_Mutation p.S1225L 0.58 tolerated(0.19) benign(0.047) TCGA-FR-A726-01 7 148112791 148112791 C T CNTNAP2 3'UTR 0.33 TCGA-FR-A726-01 7 148950747 148950747 C T ZNF212 Silent p.F243F 0.22 TCGA-FR-A726-01 7 149152507 149152507 C T ZNF777 Missense_Mutation p.A203T 0.17 deleterious(0.01) probably_damaging(0.915) TCGA-FR-A726-01 7 149152508 149152508 C T ZNF777 Silent p.Q202Q 0.17 TCGA-FR-A726-01 7 149152675 149152675 G A ZNF777 Missense_Mutation p.P147S 0.18 tolerated(0.06) benign(0.028) TCGA-FR-A726-01 7 149419929 149419929 C T KRBA1 Silent p.I218I 0.19 TCGA-FR-A726-01 7 149473463 149473463 C T ZNF467 5'Flank 0.16 TCGA-FR-A726-01 7 149490421 149490421 G A SSPO RNA 0.26 TCGA-FR-A726-01 7 149503039 149503039 G A SSPO RNA 0.39 TCGA-FR-A726-01 7 149509164 149509164 C T SSPO RNA 0.17 TCGA-FR-A726-01 7 149509411 149509411 G A SSPO RNA 0.21 TCGA-FR-A726-01 7 149518047 149518047 G A SSPO RNA 0.24 TCGA-FR-A726-01 7 149519033 149519033 C T SSPO RNA 0.24 TCGA-FR-A726-01 7 149557716 149557716 C T ZNF862 Silent p.A489A 0.29 TCGA-FR-A726-01 7 149558271 149558271 C T ZNF862 Silent p.I674I 0.15 TCGA-FR-A726-01 7 149558416 149558416 C T ZNF862 Missense_Mutation p.H723Y 0.41 tolerated(0.15) benign(0.014) TCGA-FR-A726-01 7 150027598 150027598 G A ZBED6CL Silent p.Q35Q 0.22 TCGA-FR-A726-01 7 150034598 150034598 G A LRRC61 Silent p.L216L 0.17 TCGA-FR-A726-01 7 150069172 150069172 C T REPIN1 Missense_Mutation p.S338L 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 7 150094453 150094453 C T ZNF775 Missense_Mutation p.S295L 0.14 tolerated(0.24) probably_damaging(0.98) TCGA-FR-A726-01 7 150171208 150171208 G A GIMAP8 Missense_Mutation p.G264E 0.19 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 7 150171303 150171303 A C GIMAP8 Missense_Mutation p.K296Q 0.29 tolerated(0.08) probably_damaging(0.928) TCGA-FR-A726-01 7 150174434 150174434 G A GIMAP8 Missense_Mutation p.E522K 0.27 tolerated(0.43) benign(0.152) TCGA-FR-A726-01 7 150174589 150174589 G A GIMAP8 Silent p.G573G 0.19 TCGA-FR-A726-01 7 150217156 150217156 G A GIMAP7 Missense_Mutation p.E32K 0.17 tolerated(1) benign(0.004) TCGA-FR-A726-01 7 150218014 150218014 G A GIMAP7 3'UTR 0.33 TCGA-FR-A726-01 7 150270131 150270131 C T GIMAP4 Silent p.L325L 0.31 TCGA-FR-A726-01 7 150325023 150325023 G A GIMAP6 Silent p.A221A 0.22 TCGA-FR-A726-01 7 150325067 150325067 C T GIMAP6 Missense_Mutation p.E207K 0.30 deleterious(0.02) probably_damaging(0.924) TCGA-FR-A726-01 7 150389570 150389570 G A GIMAP2 Missense_Mutation p.G66R 0.24 tolerated(0.07) benign(0.385) TCGA-FR-A726-01 7 150389937 150389937 G A GIMAP2 Missense_Mutation p.G188E 0.34 tolerated(0.06) probably_damaging(0.995) TCGA-FR-A726-01 7 150390448 150390448 C T GIMAP2 3'UTR 0.29 TCGA-FR-A726-01 7 150417193 150417193 G A GIMAP1 Missense_Mutation p.G34E 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 150417194 150417194 G A GIMAP1 Silent p.G34G 0.20 TCGA-FR-A726-01 7 150417312 150417312 G A GIMAP1 Missense_Mutation p.D74N 0.27 tolerated(0.16) benign(0.005) TCGA-FR-A726-01 7 150417600 150417600 G A GIMAP1 Missense_Mutation p.E170K 0.21 tolerated(0.06) benign(0.188) TCGA-FR-A726-01 7 150417638 150417638 G A GIMAP1 Silent p.G182G 0.22 TCGA-FR-A726-01 7 150418024 150418024 C T GIMAP1 3'UTR 0.20 TCGA-FR-A726-01 7 150493710 150493710 G A TMEM176B Intron 0.33 TCGA-FR-A726-01 7 150498676 150498676 C T TMEM176A Missense_Mutation p.A13V 0.13 tolerated(0.13) benign(0.152) TCGA-FR-A726-01 7 150499314 150499314 C T TMEM176A Silent p.I62I 0.09 TCGA-FR-A726-01 7 150501975 150501975 T G TMEM176A 3'UTR 0.34 TCGA-FR-A726-01 7 150553831 150553831 G A AOC1 Silent p.R91R 0.23 TCGA-FR-A726-01 7 150555962 150555962 G A AOC1 Nonsense_Mutation p.W561* 0.16 TCGA-FR-A726-01 7 150558103 150558103 C T AOC1 Missense_Mutation p.P688S 0.24 tolerated(0.26) probably_damaging(0.925) TCGA-FR-A726-01 7 150558104 150558104 C T AOC1 Missense_Mutation p.P688L 0.24 deleterious(0.04) probably_damaging(0.969) TCGA-FR-A726-01 7 150642545 150642545 C T KCNH2 Missense_Mutation p.E1130K 0.19 tolerated_low_confidence(0.37) benign(0.007) TCGA-FR-A726-01 7 150645538 150645538 C T KCNH2 Missense_Mutation p.D896N 0.14 tolerated(0.16) benign(0.107) TCGA-FR-A726-01 7 150647356 150647356 C T KCNH2 Silent p.G766G 0.22 TCGA-FR-A726-01 7 150703564 150703564 C T NOS3 Missense_Mutation p.P601L 0.21 tolerated(0.34) benign(0.004) TCGA-FR-A726-01 7 150714297 150714297 C T ATG9B Silent p.E705E 0.23 TCGA-FR-A726-01 7 150746502 150746502 C T ASIC3 Missense_Mutation p.T177I 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-FR-A726-01 7 150776590 150776590 G A FASTK Missense_Mutation p.L168F 0.08 deleterious(0) possibly_damaging(0.848) TCGA-FR-A726-01 7 150813919 150813919 C T AGAP3 Missense_Mutation p.S124F 0.26 deleterious(0) probably_damaging(0.976) TCGA-FR-A726-01 7 150835294 150835294 G A AGAP3 Nonsense_Mutation p.W520* 0.44 TCGA-FR-A726-01 7 150878052 150878052 G A ASB10 Missense_Mutation p.R360C 0.15 deleterious(0) possibly_damaging(0.534) TCGA-FR-A726-01 7 150878053 150878053 G A ASB10 Silent p.V359V 0.16 TCGA-FR-A726-01 7 150935572 150935572 C T CHPF2 Silent p.F708F 0.31 TCGA-FR-A726-01 7 151093095 151093095 G A WDR86 Missense_Mutation p.L165F 0.40 tolerated(0.22) benign(0.086) TCGA-FR-A726-01 7 151134987 151134987 G A CRYGN Intron 0.46 TCGA-FR-A726-01 7 151134989 151134989 C T CRYGN Intron 0.17 TCGA-FR-A726-01 7 151705006 151705006 G A GALNTL5 Missense_Mutation p.E335K 0.21 deleterious(0) benign(0.368) TCGA-FR-A726-01 7 151818886 151818886 C T GALNT11 3'UTR 0.21 TCGA-FR-A726-01 7 151853113 151853113 G A KMT2C Nonsense_Mutation p.Q3948* 0.25 TCGA-FR-A726-01 7 151859403 151859403 G A KMT2C Silent p.V3753V 0.14 TCGA-FR-A726-01 7 151878119 151878119 G A KMT2C Missense_Mutation p.P2276S 0.23 possibly_damaging(0.698) TCGA-FR-A726-01 7 151878990 151878990 G A KMT2C Silent p.S1985S 0.20 TCGA-FR-A726-01 7 151900067 151900067 G A KMT2C Silent p.Y1348Y 0.23 TCGA-FR-A726-01 7 151921545 151921545 G A KMT2C Missense_Mutation p.P1045S 0.28 probably_damaging(1) TCGA-FR-A726-01 7 151927069 151927069 C T KMT2C Missense_Mutation p.G972E 0.05 probably_damaging(1) TCGA-FR-A726-01 7 151949087 151949087 G A KMT2C Silent p.L520L 0.24 TCGA-FR-A726-01 7 151949088 151949088 G A KMT2C Silent p.H519H 0.24 TCGA-FR-A726-01 7 15240839 15240839 C T AGMO 3'UTR 0.29 TCGA-FR-A726-01 7 152522141 152522141 C T ACTR3B Silent p.S295S 0.09 TCGA-FR-A726-01 7 1539182 1539182 G A INTS1 Silent p.F257F 0.38 TCGA-FR-A726-01 7 154143328 154143328 G A DPP6 Silent p.R91R 0.18 TCGA-FR-A726-01 7 154263931 154263931 C T DPP6 Missense_Mutation p.S186L 0.10 tolerated(0.07) benign(0.003) TCGA-FR-A726-01 7 15427106 15427106 C T AGMO Silent p.K294K 0.06 TCGA-FR-A726-01 7 154587593 154587593 G A DPP6 Silent p.Q433Q 0.29 TCGA-FR-A726-01 7 154587594 154587594 G A DPP6 Splice_Site p.X433_splice 0.29 TCGA-FR-A726-01 7 154677455 154677455 G A DPP6 Splice_Site p.X749_splice 0.11 TCGA-FR-A726-01 7 154679399 154679399 C T DPP6 Silent p.S753S 0.29 TCGA-FR-A726-01 7 15470634 15470634 G A AGMO Missense_Mutation p.S170F 0.08 deleterious(0.02) probably_damaging(0.983) TCGA-FR-A726-01 7 154767930 154767930 G A PAXIP1 Missense_Mutation p.R184C 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 155556607 155556607 C T RBM33 Silent p.T1027T 0.27 TCGA-FR-A726-01 7 155596355 155596355 C T SHH Missense_Mutation p.G210S 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 7 156451265 156451265 G A RNF32 Splice_Site p.X228_splice 0.33 TCGA-FR-A726-01 7 156476603 156476603 G A LMBR1 3'UTR 0.31 TCGA-FR-A726-01 7 15652013 15652013 C T MEOX2 Silent p.%3D 0.29 TCGA-FR-A726-01 7 15652156 15652156 C G MEOX2 Missense_Mutation p.K257N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-FR-A726-01 7 15666531 15666531 C T MEOX2 Missense_Mutation p.G177E 0.34 deleterious(0.01) probably_damaging(0.96) TCGA-FR-A726-01 7 156746817 156746817 C G NOM1 Missense_Mutation p.A378G 0.17 tolerated(0.12) benign(0.143) TCGA-FR-A726-01 7 156798336 156798336 C T MNX1 Missense_Mutation p.E362K 0.20 deleterious_low_confidence(0.02) benign(0.2) TCGA-FR-A726-01 7 157369323 157369323 G A PTPRN2 Missense_Mutation p.S922F 0.14 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 7 157926403 157926403 C T PTPRN2 Missense_Mutation p.E508K 0.28 tolerated(0.15) benign(0.042) TCGA-FR-A726-01 7 157931072 157931072 C T PTPRN2 Missense_Mutation p.R349Q 0.19 tolerated(0.91) benign(0.001) TCGA-FR-A726-01 7 157959764 157959764 G A PTPRN2 Missense_Mutation p.P257S 0.31 tolerated(0.37) benign(0.008) TCGA-FR-A726-01 7 157985102 157985102 G A PTPRN2 Missense_Mutation p.P156S 0.23 tolerated(0.14) benign(0.009) TCGA-FR-A726-01 7 158468333 158468333 G A NCAPG2 Missense_Mutation p.P388S 0.29 deleterious(0.02) probably_damaging(0.967) TCGA-FR-A726-01 7 158824632 158824632 G A VIPR2 Silent p.F366F 0.18 TCGA-FR-A726-01 7 16502463 16502463 G A SOSTDC1 Missense_Mutation p.P111S 0.33 deleterious(0) possibly_damaging(0.492) TCGA-FR-A726-01 7 16817527 16817527 C T TSPAN13 Silent p.T139T 0.18 TCGA-FR-A726-01 7 17930038 17930038 G A SNX13 Missense_Mutation p.L130F 0.27 tolerated(0.06) probably_damaging(0.964) TCGA-FR-A726-01 7 18688140 18688140 C T HDAC9 Missense_Mutation p.S434L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 18875185 18875185 C T HDAC9 Silent p.F854F 0.41 TCGA-FR-A726-01 7 19184868 19184868 C T FERD3L Missense_Mutation p.G40R 0.29 tolerated(0.1) benign(0.014) TCGA-FR-A726-01 7 19184869 19184869 C T FERD3L Silent p.L39L 0.29 TCGA-FR-A726-01 7 20198078 20198078 G A MACC1 Missense_Mutation p.L636F 0.25 deleterious(0) possibly_damaging(0.801) TCGA-FR-A726-01 7 20198276 20198276 G A MACC1 Missense_Mutation p.L570F 0.29 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 7 20198832 20198833 AA T MACC1 Frame_Shift_Del p.F384* 0.28 TCGA-FR-A726-01 7 20198853 20198853 G A MACC1 Silent p.P377P 0.23 TCGA-FR-A726-01 7 20444412 20444412 C T ITGB8 Missense_Mutation p.P617S 0.28 deleterious(0.04) probably_damaging(0.978) TCGA-FR-A726-01 7 20825329 20825329 G A SP8 Missense_Mutation p.S36F 0.19 deleterious(0.01) benign(0.102) TCGA-FR-A726-01 7 21646079 21646079 C T DNAH11 Silent p.I1228I 0.17 TCGA-FR-A726-01 7 21657263 21657263 C T DNAH11 Silent p.V1379V 0.21 TCGA-FR-A726-01 7 21657349 21657349 C G DNAH11 Missense_Mutation p.P1408R 0.10 possibly_damaging(0.847) TCGA-FR-A726-01 7 21695476 21695476 C T DNAH11 Silent p.F1662F 0.20 TCGA-FR-A726-01 7 21737786 21737786 G C DNAH11 Missense_Mutation p.K2052N 0.30 probably_damaging(1) TCGA-FR-A726-01 7 21789908 21789908 C T DNAH11 Missense_Mutation p.H2963Y 0.26 benign(0.15) TCGA-FR-A726-01 7 21882170 21882170 G A DNAH11 Missense_Mutation p.R3574K 0.31 benign(0.002) TCGA-FR-A726-01 7 21940674 21940674 G A DNAH11 Silent p.K4458K 0.31 TCGA-FR-A726-01 7 21951281 21951281 C T CDCA7L Missense_Mutation p.G86E 0.27 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 7 22233080 22233080 G A RAPGEF5 Intron 0.25 TCGA-FR-A726-01 7 23015906 23015906 G A FAM126A Silent p.F183F 0.35 TCGA-FR-A726-01 7 23296724 23296724 C T GPNMB Intron 0.10 TCGA-FR-A726-01 7 23296725 23296725 C T GPNMB Intron 0.11 TCGA-FR-A726-01 7 23809258 23809258 G A STK31 Splice_Site p.X533_splice 0.23 TCGA-FR-A726-01 7 23830510 23830510 G A STK31 Missense_Mutation p.G902E 0.39 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 23871772 23871772 C T STK31 Silent p.S949S 0.31 TCGA-FR-A726-01 7 24331309 24331309 G A NPY 3'UTR 0.35 TCGA-FR-A726-01 7 2472979 2472979 C T CHST12 Silent p.L235L 0.30 TCGA-FR-A726-01 7 2638124 2638124 C T IQCE Missense_Mutation p.P489L 0.24 deleterious(0.05) benign(0.019) TCGA-FR-A726-01 7 2649684 2649684 C T IQCE Missense_Mutation p.S659F 0.34 deleterious(0.05) benign(0.069) TCGA-FR-A726-01 7 2686498 2686498 C T TTYH3 Silent p.L45L 0.25 TCGA-FR-A726-01 7 27142001 27142001 G A HOXA2 Missense_Mutation p.S40L 0.06 deleterious(0.01) benign(0.015) TCGA-FR-A726-01 7 27149829 27149829 G A HOXA3 Missense_Mutation p.P144L 0.31 tolerated(0.06) possibly_damaging(0.713) TCGA-FR-A726-01 7 27204506 27204506 T C HOXA9 Missense_Mutation p.I191V 0.27 tolerated(0.09) probably_damaging(0.935) TCGA-FR-A726-01 7 2748752 2748752 G A AMZ1 Silent p.P215P 0.34 TCGA-FR-A726-01 7 27671975 27671975 G A HIBADH Silent p.S114S 0.31 TCGA-FR-A726-01 7 29135784 29135784 C T CPVL Missense_Mutation p.G113E 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 2946462 2946462 C T CARD11 Missense_Mutation p.R1092Q 0.43 deleterious(0.01) possibly_damaging(0.631) TCGA-FR-A726-01 7 2952939 2952939 A G CARD11 Missense_Mutation p.F1001L 0.27 tolerated(0.1) benign(0.007) TCGA-FR-A726-01 7 29606113 29606113 C T PRR15 Silent p.S56S 0.12 TCGA-FR-A726-01 7 2977629 2977629 G A CARD11 Missense_Mutation p.S352L 0.23 tolerated(0.13) probably_damaging(0.994) TCGA-FR-A726-01 7 2979502 2979502 G A CARD11 Nonsense_Mutation p.Q249* 0.35 TCGA-FR-A726-01 7 2984154 2984154 C T CARD11 Missense_Mutation p.G126S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 30054432 30054432 C T FKBP14 Silent p.E185E 0.47 TCGA-FR-A726-01 7 30491655 30491655 G A NOD1 Silent p.L460L 0.08 TCGA-FR-A726-01 7 30795327 30795327 A T INMT Nonsense_Mutation p.K218* 0.07 TCGA-FR-A726-01 7 30951579 30951579 C T AQP1 Silent p.L19L 0.35 TCGA-FR-A726-01 7 31013603 31013603 C T GHRHR Silent p.L201L 0.25 TCGA-FR-A726-01 7 31120239 31120239 G A ADCYAP1R1 Missense_Mutation p.E93K 0.44 tolerated_low_confidence(0.29) benign(0.057) TCGA-FR-A726-01 7 31682371 31682371 G A CCDC129 Missense_Mutation p.V489I 0.32 tolerated(0.19) benign(0.156) TCGA-FR-A726-01 7 31746942 31746942 C T PPP1R17 3'UTR 0.35 TCGA-FR-A726-01 7 31792970 31792970 C T PDE1C 3'UTR 0.32 TCGA-FR-A726-01 7 31855767 31855767 C T PDE1C Silent p.E588E 0.31 TCGA-FR-A726-01 7 31904630 31904630 G A PDE1C Missense_Mutation p.P286S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 32909721 32909721 G A KBTBD2 Missense_Mutation p.R370C 0.08 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 7 34009938 34009938 C T BMPER Intron 0.36 TCGA-FR-A726-01 7 34097694 34097694 C T BMPER Silent p.I317I 0.28 TCGA-FR-A726-01 7 34118567 34118567 G A BMPER Missense_Mutation p.D393N 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 34125654 34125654 C T BMPER Silent p.S565S 0.35 TCGA-FR-A726-01 7 34192701 34192701 C T BMPER Intron 0.30 TCGA-FR-A726-01 7 34192703 34192703 G A BMPER Splice_Site p.X626_splice 0.42 TCGA-FR-A726-01 7 34698142 34698142 G A NPSR1 Missense_Mutation p.E40K 0.29 deleterious(0.03) benign(0.167) TCGA-FR-A726-01 7 34867060 34867060 C T NPSR1 Silent p.L176L 0.31 TCGA-FR-A726-01 7 34884512 34884512 G A NPSR1 Silent p.G254G 0.31 TCGA-FR-A726-01 7 34979909 34979909 G A DPY19L1 Missense_Mutation p.P501S 0.19 tolerated(0.4) benign(0.038) TCGA-FR-A726-01 7 35293175 35293175 G A TBX20 Silent p.S19S 0.43 TCGA-FR-A726-01 7 36588291 36588291 A G AOAH Silent p.L354L 0.18 TCGA-FR-A726-01 7 3681638 3681638 G A SDK1 Missense_Mutation p.G205E 0.32 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 7 37172840 37172840 C T ELMO1 Splice_Site p.X363_splice 0.37 TCGA-FR-A726-01 7 37253052 37253052 C T ELMO1 Missense_Mutation p.R281Q 0.47 tolerated(0.32) probably_damaging(0.999) TCGA-FR-A726-01 7 37298844 37298844 C T ELMO1 Missense_Mutation p.E119K 0.36 deleterious(0) possibly_damaging(0.794) TCGA-FR-A726-01 7 37298927 37298927 C T ELMO1 Missense_Mutation p.R91Q 0.38 tolerated(0.53) possibly_damaging(0.573) TCGA-FR-A726-01 7 37780724 37780724 C T GPR141 Silent p.F243F 0.42 TCGA-FR-A726-01 7 37924012 37924012 G A NME8 Missense_Mutation p.E368K 0.27 tolerated(0.22) benign(0.173) TCGA-FR-A726-01 7 38289148 38289148 G A TRGC2 Silent p.S9S 0.11 TCGA-FR-A726-01 7 38393347 38393347 G A TRGV4 Missense_Mutation p.S108F 0.38 deleterious(0.02) benign(0.057) TCGA-FR-A726-01 7 38431380 38431380 G A AMPH Missense_Mutation p.S616F 0.32 tolerated(0.1) benign(0.008) TCGA-FR-A726-01 7 38500931 38500931 G A AMPH Silent p.F323F 0.25 TCGA-FR-A726-01 7 38502633 38502633 G A AMPH Missense_Mutation p.P277L 0.29 tolerated(0.23) probably_damaging(0.999) TCGA-FR-A726-01 7 39379499 39379499 C T POU6F2 Missense_Mutation p.S257F 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-FR-A726-01 7 39379538 39379538 C T POU6F2 Missense_Mutation p.S270F 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 7 39472743 39472743 G A POU6F2 Missense_Mutation p.G365D 0.27 deleterious(0) unknown(0) TCGA-FR-A726-01 7 40488926 40488926 G A SUGCT Missense_Mutation p.G293E 0.31 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 7 4089020 4089020 G A SDK1 Silent p.V881V 0.34 TCGA-FR-A726-01 7 41729961 41729961 C T INHBA Missense_Mutation p.E190K 0.38 tolerated(0.57) benign(0.201) TCGA-FR-A726-01 7 4277385 4277385 G A SDK1 Silent p.G2033G 0.31 TCGA-FR-A726-01 7 4304842 4304842 G A SDK1 Nonsense_Mutation p.W2156* 0.28 TCGA-FR-A726-01 7 43447309 43447309 G A HECW1 Silent p.V260V 0.32 TCGA-FR-A726-01 7 43496020 43496020 C T HECW1 Silent p.I875I 0.10 TCGA-FR-A726-01 7 44009425 44009425 G A POLR2J4 Intron 0.23 TCGA-FR-A726-01 7 44009426 44009426 G A POLR2J4 Intron 0.23 TCGA-FR-A726-01 7 44044775 44044775 G A SPDYE1 Missense_Mutation p.R194Q 0.04 deleterious(0.01) probably_damaging(0.935) TCGA-FR-A726-01 7 44425655 44425655 G A NUDCD3 Silent p.F347F 0.09 TCGA-FR-A726-01 7 44467253 44467253 G A NUDCD3 Nonsense_Mutation p.R187* 0.37 TCGA-FR-A726-01 7 44621332 44621332 G A TMED4 Missense_Mutation p.P84L 0.33 deleterious(0.01) benign(0.363) TCGA-FR-A726-01 7 44806017 44806017 C T ZMIZ2 Intron 0.31 TCGA-FR-A726-01 7 45725574 45725574 C T ADCY1 Missense_Mutation p.P696L 0.32 deleterious(0.01) possibly_damaging(0.493) TCGA-FR-A726-01 7 45932694 45932694 C T IGFBP1 3'UTR 0.23 TCGA-FR-A726-01 7 47317662 47317662 G A TNS3 3'UTR 0.33 TCGA-FR-A726-01 7 47408077 47408077 G A TNS3 Silent p.A722A 0.31 TCGA-FR-A726-01 7 47872703 47872703 G A PKD1L1 Missense_Mutation p.P2108S 0.32 tolerated(0.2) benign(0.045) TCGA-FR-A726-01 7 47872754 47872754 G A PKD1L1 Missense_Mutation p.H2091Y 0.28 tolerated(1) benign(0.024) TCGA-FR-A726-01 7 47886514 47886514 G A PKD1L1 Missense_Mutation p.P1706S 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-FR-A726-01 7 47904832 47904832 G A PKD1L1 Silent p.L1377L 0.35 TCGA-FR-A726-01 7 47917170 47917170 G A PKD1L1 Missense_Mutation p.R1194W 0.33 deleterious(0.03) benign(0.017) TCGA-FR-A726-01 7 4841511 4841511 C T RADIL Missense_Mutation p.R872K 0.40 tolerated(1) benign(0.019) TCGA-FR-A726-01 7 48547540 48547540 C T ABCA13 Silent p.I4473I 0.41 TCGA-FR-A726-01 7 48626879 48626879 T A ABCA13 Missense_Mutation p.L4879I 0.25 probably_damaging(0.99) TCGA-FR-A726-01 7 4874703 4874703 C T RADIL Silent p.L317L 0.29 TCGA-FR-A726-01 7 4876221 4876221 G A RADIL Missense_Mutation p.A184V 0.29 deleterious(0.04) benign(0.009) TCGA-FR-A726-01 7 4899715 4899715 G A PAPOLB Missense_Mutation p.S575F 0.44 deleterious(0.03) benign(0.275) TCGA-FR-A726-01 7 4917275 4917275 C T RADIL Missense_Mutation p.E166K 0.41 deleterious(0.04) benign(0.178) TCGA-FR-A726-01 7 50070852 50070852 G A ZPBP Missense_Mutation p.P181L 0.20 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 7 50467669 50467669 G A IKZF1 Missense_Mutation p.E260K 0.33 deleterious(0.01) benign(0.069) TCGA-FR-A726-01 7 50468053 50468053 G A IKZF1 Missense_Mutation p.E388K 0.23 deleterious(0.02) possibly_damaging(0.726) TCGA-FR-A726-01 7 50468271 50468271 G A IKZF1 Silent p.R460R 0.17 TCGA-FR-A726-01 7 50513419 50513419 C A FIGNL1 Nonsense_Mutation p.E523* 0.29 TCGA-FR-A726-01 7 50566882 50566882 G A DDC Silent p.I280I 0.47 TCGA-FR-A726-01 7 50737461 50737461 G A GRB10 Silent p.L154L 0.34 TCGA-FR-A726-01 7 51258743 51258743 C T COBL Silent p.R163R 0.50 TCGA-FR-A726-01 7 51261210 51261210 G A COBL Missense_Mutation p.R108W 0.30 tolerated(0.24) benign(0.079) TCGA-FR-A726-01 7 53104459 53104459 C T POM121L12 3'UTR 0.25 TCGA-FR-A726-01 7 5391567 5391567 G C TNRC18 Missense_Mutation p.P1785A 0.43 benign(0.002) TCGA-FR-A726-01 7 540868 540868 C T PDGFA Silent p.V155V 0.32 TCGA-FR-A726-01 7 54614659 54614659 G A VSTM2A Missense_Mutation p.R89K 0.29 tolerated(0.26) benign(0.16) TCGA-FR-A726-01 7 55211030 55211030 T C EGFR Silent p.I91I 0.24 TCGA-FR-A726-01 7 55224516 55224516 G A EGFR Missense_Mutation p.E400K 0.31 deleterious(0.02) probably_damaging(0.971) TCGA-FR-A726-01 7 55238263 55238263 C T EGFR Intron 0.32 TCGA-FR-A726-01 7 55240673 55240673 C T EGFR Intron 0.42 TCGA-FR-A726-01 7 55240706 55240706 G A EGFR Missense_Mutation p.M650I 0.29 tolerated(0.18) benign(0) TCGA-FR-A726-01 7 55241648 55241648 C T EGFR Missense_Mutation p.P699L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 55249046 55249046 C T EGFR Missense_Mutation p.L782F 0.32 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 7 55266457 55266457 G A EGFR Missense_Mutation p.G917R 0.27 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 7 55560108 55560108 G A VOPP1 Silent p.F65F 0.50 TCGA-FR-A726-01 7 56007245 56007245 A T ZNF713 Missense_Mutation p.K280I 0.24 deleterious(0) possibly_damaging(0.773) TCGA-FR-A726-01 7 56007448 56007448 C T ZNF713 Missense_Mutation p.H348Y 0.29 deleterious(0.05) benign(0.007) TCGA-FR-A726-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.70 TCGA-FR-A726-01 7 5925804 5925804 C T OCM 3'UTR 0.18 TCGA-FR-A726-01 7 5965416 5965416 G A RSPH10B 3'Flank 0.18 TCGA-FR-A726-01 7 62752445 62752445 A G ZNF733P RNA 0.11 TCGA-FR-A726-01 7 62752515 62752515 C T ZNF733P RNA 0.12 TCGA-FR-A726-01 7 62752567 62752567 C T ZNF733P RNA 0.16 TCGA-FR-A726-01 7 62752599 62752599 C T ZNF733P RNA 0.11 TCGA-FR-A726-01 7 62758735 62758735 G A ZNF733P RNA 0.19 TCGA-FR-A726-01 7 63538511 63538511 C T ZNF727 Missense_Mutation p.H362Y 0.24 deleterious(0) possibly_damaging(0.808) TCGA-FR-A726-01 7 63538735 63538735 C T ZNF727 Silent p.F436F 0.14 TCGA-FR-A726-01 7 63726349 63726349 G A ZNF679 Missense_Mutation p.R113K 0.20 tolerated(0.06) benign(0.079) TCGA-FR-A726-01 7 63726517 63726517 C T ZNF679 Missense_Mutation p.S169L 0.18 tolerated(0.16) benign(0.003) TCGA-FR-A726-01 7 64168631 64168631 C T ZNF107 Missense_Mutation p.T650I 0.20 tolerated(0.32) benign(0.274) TCGA-FR-A726-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.27 deleterious(0) possibly_damaging(0.869) TCGA-FR-A726-01 7 64388571 64388571 C T ZNF273 Missense_Mutation p.P289S 0.32 deleterious(0.05) benign(0.002) TCGA-FR-A726-01 7 64439291 64439291 G A ZNF117 Missense_Mutation p.P220S 0.25 deleterious(0.01) benign(0.091) TCGA-FR-A726-01 7 65705962 65705962 C T TPST1 Nonsense_Mutation p.R184* 0.19 TCGA-FR-A726-01 7 70255251 70255251 G A AUTS2 Missense_Mutation p.G1017R 0.47 tolerated(0.41) probably_damaging(0.923) TCGA-FR-A726-01 7 70800683 70800683 C T WBSCR17 Missense_Mutation p.S129L 0.20 tolerated(0.06) probably_damaging(0.95) TCGA-FR-A726-01 7 70880906 70880906 C T WBSCR17 Silent p.V207V 0.23 TCGA-FR-A726-01 7 71175845 71175845 C T WBSCR17 Missense_Mutation p.R534W 0.24 deleterious(0.04) possibly_damaging(0.656) TCGA-FR-A726-01 7 71177042 71177042 G A WBSCR17 Missense_Mutation p.E570K 0.36 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 7 71275406 71275406 C T CALN1 Silent p.T191T 0.23 TCGA-FR-A726-01 7 72419239 72419239 G A POM121 3'UTR 0.13 TCGA-FR-A726-01 7 72658185 72658185 G A GTF2IRD2P1 RNA 0.21 TCGA-FR-A726-01 7 72717357 72717357 G A NSUN5 3'UTR 0.26 TCGA-FR-A726-01 7 72717358 72717358 G A NSUN5 3'UTR 0.22 TCGA-FR-A726-01 7 72717889 72717889 G A NSUN5 Missense_Mutation p.S360F 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 72891628 72891628 A C BAZ1B Missense_Mutation p.D721E 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 7 72987262 72987262 G A TBL2 Missense_Mutation p.L213F 0.22 tolerated(0.15) benign(0.392) TCGA-FR-A726-01 7 73008078 73008078 G A MLXIPL 3'UTR 0.26 TCGA-FR-A726-01 7 73011005 73011005 G A MLXIPL Missense_Mutation p.P596S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 7 73020240 73020240 C T MLXIPL Missense_Mutation p.A274T 0.31 tolerated(0.13) possibly_damaging(0.546) TCGA-FR-A726-01 7 73470688 73470688 G A ELN Missense_Mutation p.G413D 0.22 unknown(0) TCGA-FR-A726-01 7 73483239 73483239 G A ELN 3'UTR 0.25 TCGA-FR-A726-01 7 73803482 73803482 G A CLIP2 Silent p.L871L 0.31 TCGA-FR-A726-01 7 74211766 74211766 G A GTF2IRD2 Silent p.L695L 0.23 TCGA-FR-A726-01 7 74212537 74212537 G A GTF2IRD2 Silent p.F438F 0.44 TCGA-FR-A726-01 7 74486579 74486579 G A WBSCR16 Missense_Mutation p.S110L 0.18 deleterious(0.03) benign(0.034) TCGA-FR-A726-01 7 75511503 75511503 C T RHBDD2 Missense_Mutation p.P179S 0.18 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 7 75625839 75625839 C T STYXL1 Missense_Mutation p.E297K 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 76029726 76029726 C T SRCRB4D Missense_Mutation p.G118S 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 76062827 76062827 G T ZP3 Silent p.L192L 0.09 TCGA-FR-A726-01 7 76062828 76062828 G A ZP3 Missense_Mutation p.G193R 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 76112061 76112061 T A DTX2 Missense_Mutation p.C169S 0.11 tolerated(0.09) possibly_damaging(0.843) TCGA-FR-A726-01 7 7613348 7613348 T C MIOS Silent p.I414I 0.37 TCGA-FR-A726-01 7 76828970 76828970 C T FGL2 Silent p.G47G 0.25 TCGA-FR-A726-01 7 76903071 76903071 G A CCDC146 Missense_Mutation p.E412K 0.34 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 7 76903816 76903816 G A CCDC146 Missense_Mutation p.M429I 0.18 tolerated(0.47) benign(0) TCGA-FR-A726-01 7 76903817 76903817 G A CCDC146 Missense_Mutation p.E430K 0.15 deleterious(0.01) benign(0.202) TCGA-FR-A726-01 7 76942809 76942809 G A GSAP Missense_Mutation p.P756L 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 77033922 77033922 C T GSAP Missense_Mutation p.G66E 0.25 deleterious(0.04) benign(0.158) TCGA-FR-A726-01 7 77973147 77973147 C T MAGI2 Silent p.V452V 0.33 TCGA-FR-A726-01 7 80295759 80295759 G A CD36 Silent p.R234R 0.20 TCGA-FR-A726-01 7 80427427 80427427 G A SEMA3C Missense_Mutation p.P371L 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 81358988 81358988 G A HGF Missense_Mutation p.P325S 0.28 tolerated(0.64) benign(0.099) TCGA-FR-A726-01 7 81372200 81372200 C T HGF Intron 0.25 TCGA-FR-A726-01 7 82387662 82387662 C T PCLO 3'UTR 0.27 TCGA-FR-A726-01 7 82451685 82451685 A T PCLO Intron 0.31 TCGA-FR-A726-01 7 82475910 82475910 G A PCLO Silent p.L4602L 0.15 TCGA-FR-A726-01 7 82544307 82544307 G A PCLO Missense_Mutation p.S4332L 0.20 unknown(0) TCGA-FR-A726-01 7 82544332 82544332 G A PCLO Silent p.L4324L 0.24 TCGA-FR-A726-01 7 82544911 82544911 C T PCLO Missense_Mutation p.E4131K 0.16 unknown(0) TCGA-FR-A726-01 7 82544968 82544968 C T PCLO Missense_Mutation p.E4112K 0.30 unknown(0) TCGA-FR-A726-01 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.27 unknown(0) TCGA-FR-A726-01 7 82545228 82545228 G A PCLO Missense_Mutation p.P4025L 0.20 unknown(0) TCGA-FR-A726-01 7 82545664 82545664 G A PCLO Missense_Mutation p.P3880S 0.24 unknown(0) TCGA-FR-A726-01 7 82545710 82545710 G A PCLO Silent p.F3864F 0.30 TCGA-FR-A726-01 7 82545832 82545832 G A PCLO Missense_Mutation p.L3824F 0.15 unknown(0) TCGA-FR-A726-01 7 82579113 82579113 C T PCLO Silent p.E3597E 0.22 TCGA-FR-A726-01 7 82579376 82579376 G A PCLO Missense_Mutation p.L3510F 0.19 unknown(0) TCGA-FR-A726-01 7 82579377 82579377 G A PCLO Silent p.P3509P 0.20 TCGA-FR-A726-01 7 82580183 82580183 C T PCLO Missense_Mutation p.E3241K 0.22 unknown(0) TCGA-FR-A726-01 7 82582179 82582179 G T PCLO Missense_Mutation p.T2697K 0.35 unknown(0) TCGA-FR-A726-01 7 82582301 82582301 G A PCLO Silent p.P2656P 0.26 TCGA-FR-A726-01 7 82582544 82582544 G A PCLO Silent p.S2575S 0.25 TCGA-FR-A726-01 7 82584369 82584369 C T PCLO Missense_Mutation p.G1967E 0.24 unknown(0) TCGA-FR-A726-01 7 82764221 82764221 C T PCLO Missense_Mutation p.R882Q 0.30 unknown(0) TCGA-FR-A726-01 7 82764838 82764838 G A PCLO Silent p.S676S 0.24 TCGA-FR-A726-01 7 82784887 82784887 C T PCLO Missense_Mutation p.G357E 0.22 unknown(0) TCGA-FR-A726-01 7 86415606 86415606 C T GRM3 Silent p.I166I 0.18 TCGA-FR-A726-01 7 86416035 86416035 C T GRM3 Silent p.I309I 0.29 TCGA-FR-A726-01 7 86416119 86416119 C T GRM3 Silent p.F337F 0.25 TCGA-FR-A726-01 7 86468454 86468454 G A GRM3 Missense_Mutation p.D542N 0.32 tolerated(0.16) benign(0.226) TCGA-FR-A726-01 7 86468740 86468740 C T GRM3 Missense_Mutation p.S637L 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-FR-A726-01 7 86479737 86479737 T C GRM3 Silent p.L815L 0.25 TCGA-FR-A726-01 7 86544108 86544108 G A KIAA1324L Silent p.T554T 0.10 TCGA-FR-A726-01 7 86544109 86544109 G A KIAA1324L Missense_Mutation p.T554I 0.10 deleterious(0) possibly_damaging(0.766) TCGA-FR-A726-01 7 86547781 86547781 C T KIAA1324L Missense_Mutation p.D524N 0.26 tolerated(0.47) benign(0.032) TCGA-FR-A726-01 7 86978493 86978493 G A CROT Missense_Mutation p.E37K 0.27 deleterious(0.01) benign(0.341) TCGA-FR-A726-01 7 87027869 87027869 C T CROT Missense_Mutation p.S611F 0.25 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 7 87031601 87031601 C T ABCB4 Silent p.L1224L 0.31 TCGA-FR-A726-01 7 87035663 87035663 C T ABCB4 Missense_Mutation p.E1150K 0.23 deleterious(0.04) probably_damaging(0.991) TCGA-FR-A726-01 7 87082282 87082282 C T ABCB4 Missense_Mutation p.E172K 0.26 deleterious(0.01) benign(0.25) TCGA-FR-A726-01 7 87083882 87083882 G A ABCB4 Missense_Mutation p.P105S 0.35 tolerated(0.69) benign(0.002) TCGA-FR-A726-01 7 87148735 87148735 G A ABCB1 Missense_Mutation p.T945I 0.15 deleterious(0) probably_damaging(0.946) TCGA-FR-A726-01 7 87150190 87150190 G A ABCB1 Silent p.I896I 0.27 TCGA-FR-A726-01 7 87170679 87170679 G A ABCB1 Silent p.F771F 0.32 TCGA-FR-A726-01 7 87179314 87179314 G A ABCB1 Silent p.I469I 0.33 TCGA-FR-A726-01 7 87179871 87179871 C T ABCB1 Silent p.S379S 0.23 TCGA-FR-A726-01 7 87183232 87183232 C T ABCB1 Missense_Mutation p.E282K 0.27 tolerated(0.51) benign(0.072) TCGA-FR-A726-01 7 87323250 87323250 G A RUNDC3B Missense_Mutation p.A89T 0.06 tolerated_low_confidence(0.44) benign(0.006) TCGA-FR-A726-01 7 87370852 87370852 C T RUNDC3B Missense_Mutation p.P213S 0.28 deleterious(0.03) benign(0.298) TCGA-FR-A726-01 7 87399925 87399925 G A RUNDC3B Missense_Mutation p.E237K 0.24 deleterious(0.03) probably_damaging(0.937) TCGA-FR-A726-01 7 87765335 87765335 G A ADAM22 Missense_Mutation p.M403I 0.21 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 7 87778291 87778291 G A ADAM22 Splice_Site p.X496_splice 0.24 TCGA-FR-A726-01 7 88423980 88423980 G A C7orf62 Missense_Mutation p.P93S 0.06 tolerated(0.32) benign(0.056) TCGA-FR-A726-01 7 88956681 88956681 G A ZNF804B Silent p.R91R 0.21 TCGA-FR-A726-01 7 88963932 88963932 G A ZNF804B Missense_Mutation p.E546K 0.25 tolerated(0.21) possibly_damaging(0.637) TCGA-FR-A726-01 7 88964063 88964063 G A ZNF804B Silent p.K589K 0.19 TCGA-FR-A726-01 7 88964217 88964217 C T ZNF804B Missense_Mutation p.P641S 0.19 tolerated(0.41) benign(0.005) TCGA-FR-A726-01 7 88964218 88964218 C T ZNF804B Missense_Mutation p.P641L 0.19 tolerated(0.11) benign(0.282) TCGA-FR-A726-01 7 89856544 89856544 C T STEAP2 Missense_Mutation p.P251L 0.37 deleterious(0.03) possibly_damaging(0.885) TCGA-FR-A726-01 7 89927093 89927093 G A C7orf63 Silent p.E602E 0.21 TCGA-FR-A726-01 7 89938589 89938589 C T C7orf63 Missense_Mutation p.L855F 0.07 tolerated(0.21) probably_damaging(0.992) TCGA-FR-A726-01 7 89984447 89984447 C T GTPBP10 Missense_Mutation p.L123F 0.17 tolerated(0.05) benign(0.392) TCGA-FR-A726-01 7 90338740 90338740 C T CDK14 5'UTR 0.31 TCGA-FR-A726-01 7 91570198 91570198 G A AKAP9 5'UTR 0.28 TCGA-FR-A726-01 7 91570199 91570199 G A AKAP9 5'UTR 0.28 TCGA-FR-A726-01 7 91687653 91687653 C T AKAP9 Intron 0.30 TCGA-FR-A726-01 7 91699403 91699403 C T AKAP9 Silent p.L2130L 0.27 TCGA-FR-A726-01 7 91726037 91726037 G A AKAP9 Missense_Mutation p.R3255K 0.20 benign(0.097) TCGA-FR-A726-01 7 91743052 91743052 G A CYP51A1 Missense_Mutation p.P486L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 7 92147512 92147512 G A PEX1 Missense_Mutation p.P139S 0.17 tolerated(0.1) possibly_damaging(0.813) TCGA-FR-A726-01 7 92731646 92731646 A C SAMD9 Silent p.P1255P 0.23 TCGA-FR-A726-01 7 92733706 92733706 C A SAMD9 Nonsense_Mutation p.G569* 0.33 TCGA-FR-A726-01 7 92733768 92733768 G A SAMD9 Missense_Mutation p.S548F 0.05 deleterious(0.01) possibly_damaging(0.461) TCGA-FR-A726-01 7 92733876 92733876 G A SAMD9 Missense_Mutation p.S512F 0.28 tolerated(0.06) benign(0.317) TCGA-FR-A726-01 7 92734897 92734897 G A SAMD9 Missense_Mutation p.P172S 0.25 tolerated(1) benign(0.005) TCGA-FR-A726-01 7 92761468 92761468 C T SAMD9L Missense_Mutation p.D1273N 0.28 tolerated(0.29) benign(0.347) TCGA-FR-A726-01 7 92763327 92763327 A G SAMD9L Missense_Mutation p.L653S 0.22 deleterious(0) possibly_damaging(0.733) TCGA-FR-A726-01 7 92826693 92826693 C T HEPACAM2 Missense_Mutation p.E386K 0.19 tolerated(0.92) benign(0.001) TCGA-FR-A726-01 7 92837898 92837898 G A HEPACAM2 Missense_Mutation p.S336F 0.35 deleterious(0.01) probably_damaging(0.918) TCGA-FR-A726-01 7 92837997 92837997 G A HEPACAM2 Missense_Mutation p.S303F 0.15 tolerated(0.05) benign(0.279) TCGA-FR-A726-01 7 92838062 92838062 G A HEPACAM2 Silent p.S281S 0.35 TCGA-FR-A726-01 7 93055899 93055899 G A CALCR Silent p.V432V 0.25 TCGA-FR-A726-01 7 93108781 93108781 G A CALCR Silent p.T48T 0.24 TCGA-FR-A726-01 7 93516049 93516049 C T TFPI2 3'UTR 0.15 TCGA-FR-A726-01 7 93516737 93516737 G A TFPI2 Missense_Mutation p.S156L 0.26 tolerated(0.56) possibly_damaging(0.587) TCGA-FR-A726-01 7 93551376 93551376 G A GNG11 5'UTR 0.33 TCGA-FR-A726-01 7 94039581 94039581 G A COL1A2 Missense_Mutation p.G355R 0.16 probably_damaging(0.999) TCGA-FR-A726-01 7 94043003 94043003 G A COL1A2 Missense_Mutation p.G520D 0.21 unknown(0) TCGA-FR-A726-01 7 94047141 94047141 A T COL1A2 Nonsense_Mutation p.K657* 0.16 TCGA-FR-A726-01 7 94059745 94059745 A G COL1A2 3'UTR 0.22 TCGA-FR-A726-01 7 94750136 94750136 G A PPP1R9A Silent p.R547R 0.23 TCGA-FR-A726-01 7 94750137 94750137 G A PPP1R9A Missense_Mutation p.D548N 0.22 deleterious(0) possibly_damaging(0.618) TCGA-FR-A726-01 7 95219028 95219028 C T PDK4 Missense_Mutation p.G232E 0.22 tolerated(0.16) benign(0.004) TCGA-FR-A726-01 7 95625376 95625376 C T DYNC1I1 Silent p.F337F 0.18 TCGA-FR-A726-01 7 95726824 95726824 C T DYNC1I1 Silent p.T619T 0.24 TCGA-FR-A726-01 7 96251800 96251800 C T RP11-682N22.1 RNA 0.47 TCGA-FR-A726-01 7 96746883 96746883 C T ACN9 5'UTR 0.12 TCGA-FR-A726-01 7 97362044 97362044 C A TAC1 Silent p.I40I 0.21 TCGA-FR-A726-01 7 97362045 97362045 A C TAC1 Missense_Mutation p.K41Q 0.22 tolerated(0.82) benign(0.28) TCGA-FR-A726-01 7 97363076 97363076 C T TAC1 Silent p.I55I 0.09 TCGA-FR-A726-01 7 97486014 97486014 G T ASNS Missense_Mutation p.R340S 0.20 deleterious(0) possibly_damaging(0.522) TCGA-FR-A726-01 7 97488680 97488680 G A ASNS Missense_Mutation p.P173L 0.30 tolerated(0.28) benign(0) TCGA-FR-A726-01 7 97766670 97766670 C T LMTK2 Silent p.I49I 0.24 TCGA-FR-A726-01 7 97833460 97833460 C T LMTK2 Missense_Mutation p.S1482F 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.19 probably_damaging(0.984) TCGA-FR-A726-01 7 98509803 98509803 C T TRRAP Silent p.S722S 0.18 TCGA-FR-A726-01 7 98563452 98563452 C T TRRAP Silent p.I2363I 0.18 TCGA-FR-A726-01 7 98574225 98574225 C T TRRAP Silent p.I2686I 0.12 TCGA-FR-A726-01 7 98574227 98574227 C T TRRAP Missense_Mutation p.P2687L 0.14 benign(0.009) TCGA-FR-A726-01 7 98574576 98574576 C T TRRAP Silent p.S2747S 0.20 TCGA-FR-A726-01 7 98935818 98935818 C T ARPC1A Missense_Mutation p.P27S 0.32 tolerated(0.06) benign(0.069) TCGA-FR-A726-01 7 98987573 98987573 C T ARPC1B Silent p.L146L 0.15 TCGA-FR-A726-01 7 99315247 99315247 C T CYP3A7 Missense_Mutation p.G112R 0.31 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 7 99328755 99328755 C T CYP3A7 Missense_Mutation p.G31E 0.19 deleterious(0.04) benign(0.215) TCGA-FR-A726-01 7 99795762 99795762 C T STAG3 Missense_Mutation p.A406V 0.35 deleterious(0) possibly_damaging(0.75) TCGA-FR-A726-01 7 99917207 99917207 G A SPDYE3 Missense_Mutation p.E456K 0.13 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 7 99917216 99917216 G A SPDYE3 Missense_Mutation p.D459N 0.16 tolerated(1) benign(0.2) TCGA-FR-A726-01 7 99917609 99917609 C T SPDYE3 Missense_Mutation p.S549F 0.25 deleterious(0) probably_damaging(0.947) TCGA-FR-A726-01 7 99918550 99918550 G A SPDYE3 3'UTR 0.21 TCGA-FR-A726-01 7 99971259 99971259 C T PILRA 5'UTR 0.25 TCGA-FR-A726-01 7 99997546 99997546 C T PILRA 3'UTR 0.23 TCGA-FR-A726-01 7 99998778 99998778 G A ZCWPW1 Silent p.V602V 0.31 TCGA-FR-A726-01 8 100050693 100050693 G A VPS13B Missense_Mutation p.E64K 0.43 deleterious(0) possibly_damaging(0.874) TCGA-FR-A726-01 8 100523541 100523541 T A VPS13B Silent p.L1503L 0.43 TCGA-FR-A726-01 8 100654152 100654152 C T VPS13B Silent p.I1803I 0.30 TCGA-FR-A726-01 8 100829870 100829870 C T VPS13B Missense_Mutation p.R2759W 0.17 deleterious(0) possibly_damaging(0.689) TCGA-FR-A726-01 8 100847539 100847539 G A VPS13B Silent p.K3268K 0.40 TCGA-FR-A726-01 8 100865834 100865834 C T VPS13B Missense_Mutation p.P3431L 0.18 deleterious(0.04) possibly_damaging(0.713) TCGA-FR-A726-01 8 101014523 101014523 C T RGS22 Silent p.R899R 0.30 TCGA-FR-A726-01 8 101020665 101020665 G A RGS22 Missense_Mutation p.L767F 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 101074874 101074874 C T RGS22 Missense_Mutation p.E487K 0.33 tolerated(0.89) benign(0.007) TCGA-FR-A726-01 8 101153324 101153324 G A FBXO43 Silent p.T386T 0.38 TCGA-FR-A726-01 8 101629944 101629944 G A SNX31 Silent p.I112I 0.35 TCGA-FR-A726-01 8 101661743 101661743 G A SNX31 5'UTR 0.46 TCGA-FR-A726-01 8 102381063 102381063 T G NACAP1 RNA 0.33 TCGA-FR-A726-01 8 102555548 102555548 G A GRHL2 Missense_Mutation p.E34K 0.38 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 8 102570812 102570812 C T GRHL2 Silent p.I150I 0.28 TCGA-FR-A726-01 8 103324081 103324081 C T UBR5 Missense_Mutation p.R767Q 0.29 tolerated(0.36) probably_damaging(0.945) TCGA-FR-A726-01 8 103663675 103663675 G A KLF10 Silent p.P295P 0.32 TCGA-FR-A726-01 8 10387198 10387198 C T PRSS55 Silent p.S112S 0.37 TCGA-FR-A726-01 8 10467686 10467686 C T RP1L1 Missense_Mutation p.E1308K 0.30 unknown(0) TCGA-FR-A726-01 8 104927817 104927817 G A RIMS2 Missense_Mutation p.R636K 0.41 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-FR-A726-01 8 104955100 104955100 C T RIMS2 Missense_Mutation p.P883S 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A726-01 8 105361406 105361406 C G DCSTAMP Missense_Mutation p.S209C 0.11 tolerated(0.17) benign(0.159) TCGA-FR-A726-01 8 105361407 105361407 C T DCSTAMP Silent p.S209S 0.12 TCGA-FR-A726-01 8 105405031 105405031 C T DPYS Missense_Mutation p.R475Q 0.35 deleterious(0.03) probably_damaging(0.99) TCGA-FR-A726-01 8 105544182 105544182 G A LRP12 Missense_Mutation p.A30V 0.25 tolerated_low_confidence(0.32) benign(0.02) TCGA-FR-A726-01 8 10584176 10584176 C T SOX7 Missense_Mutation p.G132E 0.29 deleterious(0) probably_damaging(0.928) TCGA-FR-A726-01 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.34 tolerated(0.1) probably_damaging(0.996) TCGA-FR-A726-01 8 106814031 106814031 G A ZFPM2 Missense_Mutation p.R574Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 8 106814118 106814118 C T ZFPM2 Missense_Mutation p.S603F 0.08 tolerated(0.05) possibly_damaging(0.569) TCGA-FR-A726-01 8 107773539 107773539 T C ABRA Missense_Mutation p.E291G 0.43 deleterious(0) possibly_damaging(0.625) TCGA-FR-A726-01 8 107781973 107781973 C T ABRA Missense_Mutation p.R149K 0.35 tolerated(0.85) benign(0.015) TCGA-FR-A726-01 8 10782294 10782294 C T XKR6 Missense_Mutation p.E271K 0.29 deleterious(0.01) possibly_damaging(0.817) TCGA-FR-A726-01 8 108276547 108276547 C T ANGPT1 Missense_Mutation p.G413E 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 109796815 109796815 C T TMEM74 Silent p.G171G 0.27 TCGA-FR-A726-01 8 109796816 109796816 C T TMEM74 Missense_Mutation p.G171E 0.28 deleterious(0.02) possibly_damaging(0.463) TCGA-FR-A726-01 8 110099744 110099744 G A TRHR Translation_Start_Site p.M1? 0.33 tolerated(0.09) benign(0.029) TCGA-FR-A726-01 8 110393629 110393629 G A PKHD1L1 Missense_Mutation p.G65E 0.64 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A726-01 8 110408258 110408258 G A PKHD1L1 Missense_Mutation p.V272I 0.25 tolerated(0.61) benign(0.011) TCGA-FR-A726-01 8 110408283 110408283 G A PKHD1L1 Missense_Mutation p.G280E 0.30 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 8 110412552 110412552 G A PKHD1L1 Silent p.Q420Q 0.40 TCGA-FR-A726-01 8 110416841 110416841 C T PKHD1L1 Silent p.L478L 0.22 TCGA-FR-A726-01 8 110447540 110447540 G A PKHD1L1 Silent p.Q1154Q 0.08 TCGA-FR-A726-01 8 110451201 110451201 G A PKHD1L1 Missense_Mutation p.G1279E 0.38 tolerated(0.16) benign(0.134) TCGA-FR-A726-01 8 110454359 110454359 C T PKHD1L1 Missense_Mutation p.S1443F 0.27 deleterious(0.01) possibly_damaging(0.901) TCGA-FR-A726-01 8 110457410 110457410 G A PKHD1L1 Missense_Mutation p.G1771D 0.32 tolerated(0.13) possibly_damaging(0.893) TCGA-FR-A726-01 8 110457766 110457766 G A PKHD1L1 Missense_Mutation p.G1890R 0.37 deleterious(0.02) possibly_damaging(0.908) TCGA-FR-A726-01 8 110463371 110463371 G A PKHD1L1 Missense_Mutation p.G2115R 0.25 deleterious(0) possibly_damaging(0.853) TCGA-FR-A726-01 8 110467059 110467059 G A PKHD1L1 Silent p.R2284R 0.45 TCGA-FR-A726-01 8 110476857 110476857 G A PKHD1L1 Missense_Mutation p.R2599K 0.35 tolerated(0.39) benign(0.044) TCGA-FR-A726-01 8 110534454 110534454 C T PKHD1L1 Missense_Mutation p.S4024F 0.34 tolerated(0.05) benign(0.068) TCGA-FR-A726-01 8 110534478 110534478 G A PKHD1L1 Missense_Mutation p.G4032E 0.27 deleterious(0.01) benign(0.368) TCGA-FR-A726-01 8 11058377 11058377 C T XKR6 Missense_Mutation p.D158N 0.25 tolerated(0.09) benign(0.04) TCGA-FR-A726-01 8 11058378 11058378 C T XKR6 Silent p.G157G 0.25 TCGA-FR-A726-01 8 110655237 110655237 G A SYBU Intron 0.48 TCGA-FR-A726-01 8 110984847 110984847 T A KCNV1 Missense_Mutation p.I211F 0.29 deleterious(0.02) benign(0.063) TCGA-FR-A726-01 8 110984929 110984929 G C KCNV1 Missense_Mutation p.D183E 0.33 tolerated(0.88) benign(0.17) TCGA-FR-A726-01 8 113304903 113304903 C T CSMD3 Missense_Mutation p.G2884E 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 8 113323204 113323204 C T CSMD3 Intron 0.35 TCGA-FR-A726-01 8 113349860 113349860 G A CSMD3 Silent p.F2251F 0.27 TCGA-FR-A726-01 8 114111063 114111063 G A CSMD3 Missense_Mutation p.S280L 0.25 tolerated(0.65) probably_damaging(0.999) TCGA-FR-A726-01 8 114449230 114449230 G A CSMD3 5'UTR 0.30 TCGA-FR-A726-01 8 118169955 118169955 C T SLC30A8 Silent p.I148I 0.07 TCGA-FR-A726-01 8 118184801 118184801 C T SLC30A8 Missense_Mutation p.R331W 0.34 deleterious(0) probably_damaging(0.912) TCGA-FR-A726-01 8 118184909 118184909 C T SLC30A8 Missense_Mutation p.P367S 0.28 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 8 119593017 119593017 G A SAMD12 Silent p.F43F 0.30 TCGA-FR-A726-01 8 119945233 119945233 G A TNFRSF11B Missense_Mutation p.L113F 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A726-01 8 11996187 11996187 G A USP17L2 Missense_Mutation p.A28V 0.12 tolerated(0.09) benign(0.3) TCGA-FR-A726-01 8 120118421 120118421 G A COLEC10 Silent p.K275K 0.34 TCGA-FR-A726-01 8 120233890 120233890 G A MAL2 Missense_Mutation p.G66R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 12043009 12043009 G A FAM86B1 Silent p.I222I 0.13 TCGA-FR-A726-01 8 120602772 120602772 G A ENPP2 Nonsense_Mutation p.R446* 0.34 TCGA-FR-A726-01 8 121256236 121256236 C T COL14A1 Missense_Mutation p.P823L 0.30 tolerated(0.86) probably_damaging(0.999) TCGA-FR-A726-01 8 121344395 121344395 G A COL14A1 Missense_Mutation p.D1559N 0.38 deleterious(0.02) possibly_damaging(0.458) TCGA-FR-A726-01 8 121381663 121381663 A G COL14A1 Silent p.Q1750Q 0.33 TCGA-FR-A726-01 8 121381683 121381683 G A COL14A1 Missense_Mutation p.G1757E 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 121644837 121644837 C T SNTB1 Silent p.K281K 0.30 TCGA-FR-A726-01 8 123965736 123965736 G A ZHX2 Silent p.A662A 0.15 TCGA-FR-A726-01 8 124034949 124034949 G A DERL1 Missense_Mutation p.S143L 0.35 deleterious(0.01) benign(0.2) TCGA-FR-A726-01 8 124219554 124219554 G A FAM83A Missense_Mutation p.G311R 0.33 tolerated(0.68) benign(0) TCGA-FR-A726-01 8 124663857 124663857 C T KLHL38 Missense_Mutation p.G437E 0.40 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 8 124693336 124693336 G A ANXA13 3'UTR 0.40 TCGA-FR-A726-01 8 124992868 124992868 G A FER1L6 Silent p.R409R 0.07 TCGA-FR-A726-01 8 125078686 125078686 C T FER1L6 Silent p.S1191S 0.33 TCGA-FR-A726-01 8 125132016 125132016 C T FER1L6 Silent p.I1853I 0.34 TCGA-FR-A726-01 8 125463050 125463050 C T TRMT12 5'UTR 0.41 TCGA-FR-A726-01 8 127569214 127569214 G A FAM84B Nonsense_Mutation p.Q141* 0.40 TCGA-FR-A726-01 8 129162434 129162434 G A MIR1208 RNA 0.38 TCGA-FR-A726-01 8 12952616 12952616 G A DLC1 Silent p.L1102L 0.31 TCGA-FR-A726-01 8 130789691 130789691 G A GSDMC Missense_Mutation p.S48L 0.33 tolerated(0.42) benign(0.007) TCGA-FR-A726-01 8 131088631 131088631 G A ASAP1 Silent p.A888A 0.37 TCGA-FR-A726-01 8 131826338 131826338 G A ADCY8 Silent p.L964L 0.36 TCGA-FR-A726-01 8 131826374 131826374 G A ADCY8 Missense_Mutation p.R952W 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A726-01 8 131880102 131880102 G A ADCY8 Missense_Mutation p.P734S 0.40 tolerated(0.08) benign(0) TCGA-FR-A726-01 8 131949440 131949440 G A ADCY8 Missense_Mutation p.H454Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 8 131964130 131964130 G A ADCY8 Missense_Mutation p.R409C 0.33 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 8 132052031 132052031 C T ADCY8 Silent p.V183V 0.27 TCGA-FR-A726-01 8 132962266 132962266 T C EFR3A Silent p.R139R 0.30 TCGA-FR-A726-01 8 133036759 133036759 G A OC90 Missense_Mutation p.P468L 0.28 tolerated(0.32) benign(0.019) TCGA-FR-A726-01 8 133053357 133053357 C T OC90 Missense_Mutation p.D131N 0.35 deleterious(0.01) probably_damaging(0.928) TCGA-FR-A726-01 8 133141345 133141345 G A KCNQ3 3'UTR 0.21 TCGA-FR-A726-01 8 133182583 133182583 G A KCNQ3 Silent p.F411F 0.26 TCGA-FR-A726-01 8 13357153 13357153 C T DLC1 Missense_Mutation p.G143E 0.27 deleterious_low_confidence(0) benign(0.292) TCGA-FR-A726-01 8 13357154 13357154 C T DLC1 Missense_Mutation p.G143R 0.27 deleterious_low_confidence(0.05) benign(0.071) TCGA-FR-A726-01 8 13357626 13357626 G A DLC1 5'UTR 0.20 TCGA-FR-A726-01 8 133880386 133880386 C T TG Missense_Mutation p.R32C 0.30 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 8 133898850 133898850 G A TG Silent p.T411T 0.08 TCGA-FR-A726-01 8 133899343 133899343 G A TG Missense_Mutation p.E576K 0.39 deleterious(0.01) possibly_damaging(0.521) TCGA-FR-A726-01 8 133923728 133923728 C T TG Missense_Mutation p.S1370L 0.32 tolerated(0.69) benign(0.006) TCGA-FR-A726-01 8 133961154 133961154 G A TG Silent p.V1789V 0.29 TCGA-FR-A726-01 8 133975258 133975258 G A TG Silent p.R1829R 0.36 TCGA-FR-A726-01 8 134024179 134024179 C T TG Missense_Mutation p.S2099F 0.36 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 8 134034296 134034296 G A TG Missense_Mutation p.G2313R 0.34 tolerated(0.06) benign(0.078) TCGA-FR-A726-01 8 134232879 134232879 C T WISP1 Silent p.S135S 0.40 TCGA-FR-A726-01 8 134239716 134239716 C T WISP1 Silent p.G289G 0.28 TCGA-FR-A726-01 8 134271421 134271421 G A NDRG1 Nonsense_Mutation p.Q127* 0.31 TCGA-FR-A726-01 8 135649862 135649862 G A ZFAT Missense_Mutation p.P97L 0.33 tolerated(0.17) benign(0.003) TCGA-FR-A726-01 8 139278008 139278008 C T FAM135B Missense_Mutation p.E79K 0.35 deleterious(0) possibly_damaging(0.802) TCGA-FR-A726-01 8 139729082 139729082 G C COL22A1 Missense_Mutation p.R796G 0.27 probably_damaging(0.934) TCGA-FR-A726-01 8 139845347 139845347 C T COL22A1 Silent p.K260K 0.34 TCGA-FR-A726-01 8 139845350 139845350 C T COL22A1 Silent p.G259G 0.32 TCGA-FR-A726-01 8 140630570 140630570 G A KCNK9 Silent p.S352S 0.30 TCGA-FR-A726-01 8 140630838 140630838 G A KCNK9 Missense_Mutation p.S263F 0.28 tolerated(0.05) possibly_damaging(0.463) TCGA-FR-A726-01 8 140630927 140630927 C T KCNK9 Silent p.T233T 0.26 TCGA-FR-A726-01 8 140744256 140744256 G A TRAPPC9 Missense_Mutation p.S1180F 0.23 deleterious(0) probably_damaging(0.983) TCGA-FR-A726-01 8 142229902 142229902 G A SLC45A4 Missense_Mutation p.R102W 0.29 deleterious(0) possibly_damaging(0.905) TCGA-FR-A726-01 8 143425425 143425425 G A TSNARE1 Missense_Mutation p.P216L 0.10 tolerated_low_confidence(0.31) benign(0.005) TCGA-FR-A726-01 8 143781960 143781960 C T LY6K Silent p.A5A 0.42 TCGA-FR-A726-01 8 143784915 143784915 G A LY6K 3'UTR 0.50 TCGA-FR-A726-01 8 143822509 143822509 C T SLURP1 3'UTR 0.28 TCGA-FR-A726-01 8 143921831 143921831 G A GML Splice_Site 0.38 TCGA-FR-A726-01 8 143927901 143927901 G A GML Missense_Mutation p.G91E 0.32 tolerated(0.09) benign(0.001) TCGA-FR-A726-01 8 144399945 144399945 C T TOP1MT Silent p.R426R 0.31 TCGA-FR-A726-01 8 144641627 144641627 T A GSDMD Missense_Mutation p.V41D 0.40 tolerated(0.22) benign(0.079) TCGA-FR-A726-01 8 144877674 144877674 G A SCRIB Silent p.P1210P 0.30 TCGA-FR-A726-01 8 144885820 144885820 G A SCRIB Silent p.S1137S 0.25 TCGA-FR-A726-01 8 144885822 144885822 A T SCRIB Missense_Mutation p.S1137T 0.25 benign(0.421) TCGA-FR-A726-01 8 144895169 144895169 G A SCRIB Intron 0.29 TCGA-FR-A726-01 8 144940356 144940356 G A EPPK1 Missense_Mutation p.R2356C 0.06 probably_damaging(1) TCGA-FR-A726-01 8 144941794 144941794 C T EPPK1 Silent p.G1876G 0.43 TCGA-FR-A726-01 8 144945877 144945877 G A EPPK1 Silent p.F515F 0.48 TCGA-FR-A726-01 8 144991851 144991851 C T PLEC Silent p.Q4183Q 0.23 TCGA-FR-A726-01 8 144997980 144997980 G A PLEC Silent p.A2176A 0.26 TCGA-FR-A726-01 8 144998390 144998390 C T PLEC Missense_Mutation p.D2040N 0.36 unknown(0) TCGA-FR-A726-01 8 144999933 144999933 C T PLEC Silent p.R1525R 0.33 TCGA-FR-A726-01 8 145004593 145004593 G A PLEC Missense_Mutation p.R943C 0.47 unknown(0) TCGA-FR-A726-01 8 145004594 145004594 G A PLEC Silent p.G942G 0.53 TCGA-FR-A726-01 8 145066748 145066748 C T GRINA Missense_Mutation p.A313V 0.35 deleterious(0) possibly_damaging(0.898) TCGA-FR-A726-01 8 145112537 145112537 C T OPLAH Silent p.P412P 0.31 TCGA-FR-A726-01 8 145114522 145114522 G A OPLAH Missense_Mutation p.R115C 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 145584671 145584671 C T SLC52A2 Missense_Mutation p.S445F 0.35 deleterious(0) benign(0.367) TCGA-FR-A726-01 8 145584717 145584717 C T SLC52A2 3'UTR 0.29 TCGA-FR-A726-01 8 145608358 145608358 C T ADCK5 Missense_Mutation p.R65C 0.39 tolerated(0.16) benign(0.009) TCGA-FR-A726-01 8 145662280 145662280 G A TONSL Missense_Mutation p.H584Y 0.07 deleterious(0.03) probably_damaging(0.989) TCGA-FR-A726-01 8 145666421 145666421 G A TONSL Silent p.I313I 0.27 TCGA-FR-A726-01 8 145692437 145692437 C T KIFC2 Missense_Mutation p.L92F 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A726-01 8 145736589 145736589 G A MFSD3 3'UTR 0.24 TCGA-FR-A726-01 8 145753370 145753370 G A C8orf82 Intron 0.28 TCGA-FR-A726-01 8 145756208 145756208 G A ARHGAP39 Missense_Mutation p.P1010S 0.24 deleterious(0) probably_damaging(0.917) TCGA-FR-A726-01 8 146155953 146155953 G A ZNF16 3'UTR 0.47 TCGA-FR-A726-01 8 1513891 1513891 G A DLGAP2 Missense_Mutation p.D345N 0.31 deleterious(0) benign(0.309) TCGA-FR-A726-01 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.57 deleterious(0) probably_damaging(0.973) TCGA-FR-A726-01 8 15998462 15998462 C T MSR1 Intron 0.35 TCGA-FR-A726-01 8 15998463 15998463 C T MSR1 Intron 0.37 TCGA-FR-A726-01 8 15998551 15998551 G A MSR1 Intron 0.09 TCGA-FR-A726-01 8 17406340 17406340 C T SLC7A2 Missense_Mutation p.S269L 0.11 tolerated(0.1) benign(0.008) TCGA-FR-A726-01 8 18079652 18079652 C T NAT1 Silent p.I94I 0.10 TCGA-FR-A726-01 8 18080167 18080167 C T NAT1 Missense_Mutation p.S266F 0.44 tolerated(0.07) benign(0.02) TCGA-FR-A726-01 8 18080227 18080227 C T NAT1 Missense_Mutation p.S286F 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 18258335 18258335 C T NAT2 Silent p.S274S 0.43 TCGA-FR-A726-01 8 18729755 18729755 C T PSD3 Missense_Mutation p.E207K 0.48 deleterious_low_confidence(0.01) benign(0.142) TCGA-FR-A726-01 8 193775 193775 C G ZNF596 Missense_Mutation p.L65V 0.37 tolerated(0.41) probably_damaging(0.987) TCGA-FR-A726-01 8 20003318 20003318 G A SLC18A1 Missense_Mutation p.P512S 0.15 tolerated(0.06) probably_damaging(0.963) TCGA-FR-A726-01 8 20110680 20110680 G A LZTS1 Silent p.S254S 0.09 TCGA-FR-A726-01 8 2021531 2021531 C T MYOM2 Silent p.I357I 0.34 TCGA-FR-A726-01 8 2044108 2044108 G A MYOM2 Missense_Mutation p.G716E 0.39 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 8 2044109 2044109 G A MYOM2 Silent p.G716G 0.39 TCGA-FR-A726-01 8 21608168 21608168 G A GFRA2 Silent p.S242S 0.43 TCGA-FR-A726-01 8 21926571 21926571 G A DMTN Silent p.E98E 0.38 TCGA-FR-A726-01 8 21951979 21951979 C T FAM160B2 Missense_Mutation p.A25V 0.08 tolerated(0.12) benign(0.033) TCGA-FR-A726-01 8 21951980 21951980 C T FAM160B2 Silent p.A25A 0.08 TCGA-FR-A726-01 8 22054770 22054770 C T BMP1 Silent p.F648F 0.49 TCGA-FR-A726-01 8 22064883 22064883 G A BMP1 Missense_Mutation p.G810E 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 8 22548239 22548239 G A EGR3 Missense_Mutation p.P304L 0.11 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 8 22884720 22884720 C T TNFRSF10B Missense_Mutation p.E288K 0.41 deleterious(0.02) possibly_damaging(0.718) TCGA-FR-A726-01 8 22969254 22969254 A G TNFRSF10C Missense_Mutation p.T28A 0.38 tolerated_low_confidence(0.29) benign(0.081) TCGA-FR-A726-01 8 23002047 23002047 G A TNFRSF10D Silent p.V290V 0.08 TCGA-FR-A726-01 8 23225886 23225886 C T LOXL2 5'UTR 0.13 TCGA-FR-A726-01 8 24181423 24181423 C T ADAM28 Missense_Mutation p.T266I 0.47 deleterious(0) possibly_damaging(0.832) TCGA-FR-A726-01 8 24255247 24255247 G A ADAMDEC1 Missense_Mutation p.D227N 0.49 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 24256925 24256925 C T ADAMDEC1 Nonsense_Mutation p.R317* 0.10 TCGA-FR-A726-01 8 24772120 24772120 G A NEFM Missense_Mutation p.E272K 0.45 deleterious(0) unknown(0) TCGA-FR-A726-01 8 24775074 24775074 G A NEFM Missense_Mutation p.G569E 0.42 tolerated(0.47) unknown(0) TCGA-FR-A726-01 8 25364730 25364730 C T CDCA2 Missense_Mutation p.H850Y 0.37 tolerated(0.44) possibly_damaging(0.736) TCGA-FR-A726-01 8 26237000 26237000 C T BNIP3L 5'Flank 0.32 TCGA-FR-A726-01 8 26237392 26237392 C T BNIP3L 5'Flank 0.16 TCGA-FR-A726-01 8 26441360 26441360 C T DPYSL2 Silent p.I58I 0.32 TCGA-FR-A726-01 8 26614222 26614222 C T ADRA1A Intron 0.44 TCGA-FR-A726-01 8 26627705 26627705 G A ADRA1A Intron 0.31 TCGA-FR-A726-01 8 26722503 26722503 G A ADRA1A 5'UTR 0.21 TCGA-FR-A726-01 8 27101281 27101281 G A STMN4 5'UTR 0.36 TCGA-FR-A726-01 8 27301764 27301764 C T PTK2B Silent p.L730L 0.27 TCGA-FR-A726-01 8 27319013 27319013 C T CHRNA2 3'UTR 0.29 TCGA-FR-A726-01 8 27319168 27319168 G A CHRNA2 Missense_Mutation p.P523L 0.40 deleterious(0) possibly_damaging(0.907) TCGA-FR-A726-01 8 27401346 27401346 G A EPHX2 Nonsense_Mutation p.W510* 0.07 TCGA-FR-A726-01 8 27845065 27845065 G A SCARA5 Missense_Mutation p.S23F 0.30 deleterious(0.01) benign(0.229) TCGA-FR-A726-01 8 28019582 28019582 C T ELP3 Silent p.I518I 0.33 TCGA-FR-A726-01 8 2820090 2820090 C T CSMD1 Missense_Mutation p.E3176K 0.25 benign(0.027) TCGA-FR-A726-01 8 2823423 2823423 C T CSMD1 Missense_Mutation p.D3052N 0.25 possibly_damaging(0.771) TCGA-FR-A726-01 8 2823435 2823435 G A CSMD1 Nonsense_Mutation p.Q3048* 0.25 TCGA-FR-A726-01 8 2824228 2824228 C T CSMD1 Missense_Mutation p.M2988I 0.29 benign(0.071) TCGA-FR-A726-01 8 28286209 28286209 G A FBXO16 3'UTR 0.39 TCGA-FR-A726-01 8 28574802 28574802 C T EXTL3 Missense_Mutation p.P409L 0.32 tolerated(0.45) benign(0.01) TCGA-FR-A726-01 8 28950362 28950362 G A KIF13B Missense_Mutation p.P1453L 0.27 deleterious_low_confidence(0.01) benign(0.188) TCGA-FR-A726-01 8 28950363 28950363 G A KIF13B Missense_Mutation p.P1453S 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-FR-A726-01 8 30361814 30361814 C T RBPMS Silent p.F86F 0.44 TCGA-FR-A726-01 8 3038647 3038647 G A CSMD1 Missense_Mutation p.H1904Y 0.27 probably_damaging(0.915) TCGA-FR-A726-01 8 3047580 3047580 C T CSMD1 Missense_Mutation p.R1751K 0.38 possibly_damaging(0.907) TCGA-FR-A726-01 8 30703473 30703473 C T TEX15 Missense_Mutation p.V1021I 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 8 3076800 3076800 G A CSMD1 Missense_Mutation p.S1550L 0.50 probably_damaging(0.999) TCGA-FR-A726-01 8 3087637 3087637 G A CSMD1 Nonsense_Mutation p.Q1424* 0.35 TCGA-FR-A726-01 8 3224628 3224628 C T CSMD1 Missense_Mutation p.G1014E 0.40 probably_damaging(1) TCGA-FR-A726-01 8 3226833 3226833 C T CSMD1 Missense_Mutation p.D948N 0.36 probably_damaging(0.991) TCGA-FR-A726-01 8 3245183 3245183 G A CSMD1 Missense_Mutation p.S872F 0.44 probably_damaging(0.956) TCGA-FR-A726-01 8 32472039 32472039 C T NRG1 Silent p.I136I 0.30 TCGA-FR-A726-01 8 32505316 32505316 C T NRG1 Intron 0.31 TCGA-FR-A726-01 8 32505460 32505460 A T NRG1 Intron 0.28 TCGA-FR-A726-01 8 32585577 32585577 C T NRG1 Missense_Mutation p.P205S 0.33 tolerated(0.05) benign(0.015) TCGA-FR-A726-01 8 32618003 32618003 G A NRG1 Intron 0.42 TCGA-FR-A726-01 8 32621451 32621451 G A NRG1 Missense_Mutation p.R490K 0.35 tolerated(0.58) benign(0.007) TCGA-FR-A726-01 8 3265691 3265691 G A CSMD1 Missense_Mutation p.P601S 0.24 probably_damaging(0.999) TCGA-FR-A726-01 8 3267101 3267101 G A CSMD1 Missense_Mutation p.P530S 0.41 probably_damaging(0.999) TCGA-FR-A726-01 8 3351207 3351207 G A CSMD1 Silent p.G462G 0.25 TCGA-FR-A726-01 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.24 probably_damaging(0.912) TCGA-FR-A726-01 8 35583683 35583683 C T UNC5D Silent p.L439L 0.44 TCGA-FR-A726-01 8 36763251 36763251 G A KCNU1 Missense_Mutation p.D679N 0.06 tolerated(0.78) benign(0.02) TCGA-FR-A726-01 8 36788640 36788640 G A KCNU1 Missense_Mutation p.E970K 0.27 tolerated(0.34) benign(0.002) TCGA-FR-A726-01 8 38369861 38369861 G A C8orf86 3'UTR 0.15 TCGA-FR-A726-01 8 39467023 39467023 G A ADAM18 Missense_Mutation p.G96E 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 39644532 39644532 C T ADAM2 Silent p.G284G 0.27 TCGA-FR-A726-01 8 39785653 39785653 C T IDO1 Silent p.F387F 0.50 TCGA-FR-A726-01 8 39792694 39792694 C T IDO2 5'UTR 0.39 TCGA-FR-A726-01 8 39872860 39872860 C T IDO2 Silent p.I334I 0.31 TCGA-FR-A726-01 8 39873083 39873083 G A IDO2 Missense_Mutation p.D409N 0.31 tolerated(0.31) benign(0.073) TCGA-FR-A726-01 8 40011065 40011065 G A C8orf4 Missense_Mutation p.R5Q 0.24 tolerated_low_confidence(0.12) benign(0.001) TCGA-FR-A726-01 8 41456572 41456572 C T AGPAT6 5'UTR 0.35 TCGA-FR-A726-01 8 41557004 41557004 C T ANK1 Missense_Mutation p.E883K 0.30 tolerated(0.23) benign(0.01) TCGA-FR-A726-01 8 41566326 41566326 C T ANK1 Silent p.S689S 0.32 TCGA-FR-A726-01 8 41566410 41566410 T C ANK1 Silent p.A661A 0.38 TCGA-FR-A726-01 8 41791935 41791935 G A KAT6A Missense_Mutation p.P1268L 0.24 unknown(0) TCGA-FR-A726-01 8 41906502 41906502 G A KAT6A 5'UTR 0.08 TCGA-FR-A726-01 8 42166522 42166522 C T IKBKB Missense_Mutation p.P224L 0.38 tolerated(0.6) possibly_damaging(0.736) TCGA-FR-A726-01 8 42174385 42174385 C T IKBKB Missense_Mutation p.P363L 0.38 deleterious(0) benign(0.23) TCGA-FR-A726-01 8 42231776 42231776 C T DKK4 Missense_Mutation p.G173R 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 43212021 43212021 C T POTEA RNA 0.30 TCGA-FR-A726-01 8 43216289 43216289 G A POTEA RNA 0.40 TCGA-FR-A726-01 8 48746878 48746878 G A PRKDC Silent p.S2676S 0.39 TCGA-FR-A726-01 8 48761735 48761735 G A PRKDC Silent p.F2419F 0.27 TCGA-FR-A726-01 8 51363267 51363267 G A SNTG1 Missense_Mutation p.R114K 0.26 tolerated(0.16) possibly_damaging(0.472) TCGA-FR-A726-01 8 52232419 52232419 C T PXDNL 3'UTR 0.28 TCGA-FR-A726-01 8 52322009 52322009 C T PXDNL Silent p.A725A 0.33 TCGA-FR-A726-01 8 52322091 52322091 C T PXDNL Missense_Mutation p.R698H 0.35 tolerated(0.83) benign(0.002) TCGA-FR-A726-01 8 52359601 52359601 C T PXDNL Silent p.V496V 0.29 TCGA-FR-A726-01 8 52384829 52384829 C T PXDNL Missense_Mutation p.E244K 0.33 tolerated(0.05) possibly_damaging(0.593) TCGA-FR-A726-01 8 53025832 53025832 C T ST18 Missense_Mutation p.E1024K 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 8 53025833 53025833 C T ST18 Silent p.L1023L 0.34 TCGA-FR-A726-01 8 53055572 53055572 C T ST18 Missense_Mutation p.E696K 0.27 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 8 53073958 53073958 C T ST18 Missense_Mutation p.R524Q 0.42 tolerated(0.72) benign(0.007) TCGA-FR-A726-01 8 53077734 53077734 C T ST18 Missense_Mutation p.G419E 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 53079532 53079532 C T ST18 Missense_Mutation p.E362K 0.28 deleterious(0.03) possibly_damaging(0.721) TCGA-FR-A726-01 8 54141977 54141977 G A OPRK1 Silent p.F341F 0.44 TCGA-FR-A726-01 8 54147548 54147548 C T OPRK1 Silent p.G127G 0.36 TCGA-FR-A726-01 8 54163397 54163397 G A OPRK1 Silent p.S67S 0.28 TCGA-FR-A726-01 8 54163431 54163431 G A OPRK1 Missense_Mutation p.P56L 0.30 tolerated(0.48) benign(0.319) TCGA-FR-A726-01 8 54163539 54163539 G A OPRK1 Missense_Mutation p.A20V 0.26 tolerated(0.27) benign(0.013) TCGA-FR-A726-01 8 55372474 55372474 C T SOX17 Silent p.L388L 0.28 TCGA-FR-A726-01 8 55534794 55534794 G A RP1 Missense_Mutation p.G245R 0.38 tolerated(0.07) benign(0.168) TCGA-FR-A726-01 8 55534822 55534822 G A RP1 Missense_Mutation p.G254E 0.31 deleterious(0.05) benign(0.133) TCGA-FR-A726-01 8 55537694 55537694 G A RP1 Missense_Mutation p.E418K 0.44 deleterious(0.01) benign(0.103) TCGA-FR-A726-01 8 55537813 55537813 G A RP1 Silent p.V457V 0.37 TCGA-FR-A726-01 8 55539216 55539216 C T RP1 Missense_Mutation p.P925L 0.38 tolerated(0.08) benign(0.01) TCGA-FR-A726-01 8 55539774 55539774 C T RP1 Missense_Mutation p.S1111L 0.29 deleterious(0.04) benign(0.037) TCGA-FR-A726-01 8 55542352 55542352 G A RP1 Silent p.E1970E 0.36 TCGA-FR-A726-01 8 56436189 56436189 G A XKR4 Silent p.R452R 0.24 TCGA-FR-A726-01 8 56436532 56436532 G A XKR4 Missense_Mutation p.D567N 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A726-01 8 57026370 57026370 C T MOS Missense_Mutation p.E58K 0.28 tolerated(0.14) possibly_damaging(0.507) TCGA-FR-A726-01 8 57079419 57079419 G A PLAG1 Nonsense_Mutation p.Q296* 0.35 TCGA-FR-A726-01 8 57079731 57079731 G A PLAG1 Missense_Mutation p.R192C 0.39 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 8 57213929 57213929 T A SDR16C5 3'UTR 0.38 TCGA-FR-A726-01 8 57214080 57214080 G A SDR16C5 Missense_Mutation p.H297Y 0.35 deleterious(0.02) benign(0.177) TCGA-FR-A726-01 8 57892693 57892693 G A IMPAD1 Missense_Mutation p.P151S 0.06 deleterious(0.02) benign(0.219) TCGA-FR-A726-01 8 59360028 59360028 C T UBXN2B Missense_Mutation p.P305L 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 59852042 59852042 G A TOX Missense_Mutation p.S77F 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-FR-A726-01 8 61192413 61192413 C T CA8 Missense_Mutation p.D43N 0.26 tolerated(0.27) benign(0.05) TCGA-FR-A726-01 8 61693755 61693755 C T CHD7 Missense_Mutation p.P621L 0.27 possibly_damaging(0.713) TCGA-FR-A726-01 8 62212619 62212619 G A CLVS1 Missense_Mutation p.R78K 0.41 tolerated(0.1) possibly_damaging(0.896) TCGA-FR-A726-01 8 62212635 62212635 G A CLVS1 Silent p.R83R 0.29 TCGA-FR-A726-01 8 62212722 62212722 G A CLVS1 Silent p.K112K 0.39 TCGA-FR-A726-01 8 62212764 62212764 C T CLVS1 Silent p.F126F 0.21 TCGA-FR-A726-01 8 623454 623454 C T ERICH1 Missense_Mutation p.D300N 0.35 tolerated(0.06) benign(0.277) TCGA-FR-A726-01 8 62465628 62465628 G A ASPH Missense_Mutation p.H530Y 0.24 deleterious(0.02) possibly_damaging(0.636) TCGA-FR-A726-01 8 64098966 64098966 T A YTHDF3 Missense_Mutation p.F132I 0.33 deleterious(0) probably_damaging(0.951) TCGA-FR-A726-01 8 65527718 65527718 G A CYP7B1 Missense_Mutation p.L308F 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-FR-A726-01 8 6682784 6682784 C T XKR5 RNA 0.41 TCGA-FR-A726-01 8 6682824 6682824 G A XKR5 RNA 0.59 TCGA-FR-A726-01 8 67012262 67012262 C T DNAJC5B Missense_Mutation p.S199F 0.36 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FR-A726-01 8 67049401 67049401 G A TRIM55 Silent p.L193L 0.35 TCGA-FR-A726-01 8 6728261 6728261 G A DEFB1 Missense_Mutation p.P50L 0.39 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 8 6735375 6735375 C T DEFB1 Missense_Mutation p.R2K 0.28 tolerated(0.36) benign(0.364) TCGA-FR-A726-01 8 67579062 67579062 G A VCPIP1 Silent p.I44I 0.36 TCGA-FR-A726-01 8 67771771 67771771 C T SGK3 Silent p.F482F 0.36 TCGA-FR-A726-01 8 67786663 67786663 C T MCMDC2 Missense_Mutation p.P66L 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 8 6782427 6782427 G A DEFA6 Silent p.C72C 0.41 TCGA-FR-A726-01 8 6794355 6794355 G A DEFA4 Nonsense_Mutation p.Q23* 0.38 TCGA-FR-A726-01 8 67986530 67986530 A G CSPP1 Missense_Mutation p.R51G 0.33 deleterious(0) benign(0.023) TCGA-FR-A726-01 8 68968118 68968118 G A PREX2 Missense_Mutation p.E383K 0.23 tolerated(0.07) probably_damaging(0.98) TCGA-FR-A726-01 8 69002814 69002814 G A PREX2 Missense_Mutation p.G705E 0.25 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 8 69143693 69143693 C T PREX2 3'UTR 0.37 TCGA-FR-A726-01 8 69621293 69621293 G A C8orf34 Missense_Mutation p.E436K 0.30 tolerated(0.43) benign(0.015) TCGA-FR-A726-01 8 70488252 70488252 G A SULF1 Missense_Mutation p.G74R 0.46 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 8 70513961 70513961 C T SULF1 Missense_Mutation p.H320Y 0.29 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 8 70513996 70513996 C T SULF1 Silent p.S331S 0.31 TCGA-FR-A726-01 8 70744698 70744698 C T SLCO5A1 Missense_Mutation p.E71K 0.44 tolerated_low_confidence(0.13) benign(0.001) TCGA-FR-A726-01 8 70981484 70981484 G A PRDM14 Silent p.F204F 0.31 TCGA-FR-A726-01 8 71044193 71044193 G A NCOA2 Missense_Mutation p.P1068L 0.14 tolerated(0.12) benign(0.062) TCGA-FR-A726-01 8 71553193 71553193 G A LACTB2 Missense_Mutation p.R229C 0.42 deleterious(0.02) benign(0.368) TCGA-FR-A726-01 8 71646087 71646087 G T XKR9 Missense_Mutation p.V184L 0.28 tolerated(0.06) benign(0.091) TCGA-FR-A726-01 8 72211898 72211898 G A EYA1 Missense_Mutation p.S205F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A726-01 8 72268751 72268751 G A EYA1 Intron 0.38 TCGA-FR-A726-01 8 7308365 7308365 C T SPAG11B Missense_Mutation p.R91K 0.16 tolerated(0.08) probably_damaging(0.983) TCGA-FR-A726-01 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.28 deleterious(0) possibly_damaging(0.547) TCGA-FR-A726-01 8 73480374 73480374 C T KCNB2 Silent p.S135S 0.07 TCGA-FR-A726-01 8 73848639 73848639 C T KCNB2 Missense_Mutation p.S350F 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 8 73848821 73848822 - T KCNB2 Frame_Shift_Ins p.P412Sfs*11 0.21 TCGA-FR-A726-01 8 73993429 73993429 C T SBSPON Silent p.G78G 0.41 TCGA-FR-A726-01 8 74464209 74464209 G A STAU2 Intron 0.23 TCGA-FR-A726-01 8 74526035 74526035 G T STAU2 Missense_Mutation p.P279T 0.32 tolerated(0.13) benign(0.421) TCGA-FR-A726-01 8 74891051 74891051 G A TMEM70 Missense_Mutation p.D91N 0.10 tolerated(0.08) benign(0.112) TCGA-FR-A726-01 8 75157114 75157114 G A JPH1 Missense_Mutation p.P519S 0.28 tolerated(0.14) benign(0.01) TCGA-FR-A726-01 8 75227271 75227271 G A JPH1 Missense_Mutation p.P322S 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A726-01 8 76456121 76456121 G A HNF4G Missense_Mutation p.R55K 0.34 tolerated(0.29) benign(0.252) TCGA-FR-A726-01 8 7686331 7686331 G A DEFB106A Silent p.K18K 0.31 TCGA-FR-A726-01 8 77616586 77616586 C T ZFHX4 Missense_Mutation p.S88F 0.35 possibly_damaging(0.683) TCGA-FR-A726-01 8 77616766 77616766 G T ZFHX4 Missense_Mutation p.S148I 0.09 possibly_damaging(0.607) TCGA-FR-A726-01 8 77618237 77618237 G A ZFHX4 Silent p.R638R 0.41 TCGA-FR-A726-01 8 77764826 77764826 C T ZFHX4 Missense_Mutation p.S1890F 0.47 possibly_damaging(0.683) TCGA-FR-A726-01 8 77765682 77765682 C T ZFHX4 Silent p.H2175H 0.42 TCGA-FR-A726-01 8 77766544 77766544 C T ZFHX4 Missense_Mutation p.P2463S 0.36 benign(0.163) TCGA-FR-A726-01 8 77766737 77766737 C T ZFHX4 Missense_Mutation p.P2527L 0.41 possibly_damaging(0.561) TCGA-FR-A726-01 8 77768112 77768112 G A ZFHX4 Silent p.K2985K 0.34 TCGA-FR-A726-01 8 79514213 79514213 C T PKIA 3'UTR 0.40 TCGA-FR-A726-01 8 80577169 80577169 G A STMN2 3'UTR 0.38 TCGA-FR-A726-01 8 8176309 8176309 G C SGK223 Silent p.A1192A 0.27 TCGA-FR-A726-01 8 82355495 82355495 C T PMP2 3'UTR 0.25 TCGA-FR-A726-01 8 82357216 82357216 A G PMP2 Silent p.L28L 0.33 TCGA-FR-A726-01 8 85774622 85774622 G A RALYL Missense_Mutation p.G182R 0.38 tolerated(0.39) benign(0.288) TCGA-FR-A726-01 8 85799972 85799972 G A RALYL Silent p.G286G 0.35 TCGA-FR-A726-01 8 86050467 86050467 A G LRRCC1 Silent p.R897R 0.41 TCGA-FR-A726-01 8 86250487 86250487 G A CA1 Nonsense_Mutation p.R77* 0.38 TCGA-FR-A726-01 8 86574498 86574498 G A REXO1L1P Missense_Mutation p.S410F 0.10 tolerated(0.18) benign(0.067) TCGA-FR-A726-01 8 87125970 87125970 G A ATP6V0D2 Missense_Mutation p.G55S 0.39 deleterious(0.03) probably_damaging(0.975) TCGA-FR-A726-01 8 87229736 87229736 C T SLC7A13 Missense_Mutation p.R381Q 0.13 deleterious(0.03) benign(0.112) TCGA-FR-A726-01 8 8749126 8749126 A C MFHAS1 Missense_Mutation p.D481E 0.43 tolerated(0.11) benign(0.182) TCGA-FR-A726-01 8 87567117 87567117 C T CPNE3 Missense_Mutation p.P387S 0.31 tolerated(0.08) probably_damaging(1) TCGA-FR-A726-01 8 87755859 87755859 C T CNGB3 5'UTR 0.34 TCGA-FR-A726-01 8 88885064 88885064 G A DCAF4L2 Missense_Mutation p.P379L 0.34 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 8 88885470 88885470 G A DCAF4L2 Missense_Mutation p.R244C 0.38 tolerated(0.06) benign(0.117) TCGA-FR-A726-01 8 88885833 88885833 G A DCAF4L2 Missense_Mutation p.P123S 0.36 tolerated(0.1) benign(0.01) TCGA-FR-A726-01 8 89053565 89053565 G A MMP16 3'UTR 0.48 TCGA-FR-A726-01 8 89128739 89128739 G A MMP16 Silent p.F360F 0.30 TCGA-FR-A726-01 8 89128759 89128759 G A MMP16 Missense_Mutation p.R354C 0.32 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 8 89128784 89128784 C T MMP16 Silent p.G345G 0.32 TCGA-FR-A726-01 8 89198753 89198753 C T MMP16 Missense_Mutation p.R119Q 0.29 deleterious(0) possibly_damaging(0.884) TCGA-FR-A726-01 8 89209494 89209494 G A MMP16 Silent p.P58P 0.33 TCGA-FR-A726-01 8 92972499 92972499 G A RUNX1T1 Missense_Mutation p.P607S 0.41 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 8 92972728 92972728 G A RUNX1T1 Silent p.G530G 0.31 TCGA-FR-A726-01 8 93023292 93023292 G A RUNX1T1 Missense_Mutation p.H177Y 0.23 deleterious(0) probably_damaging(0.951) TCGA-FR-A726-01 8 93088314 93088314 C T RUNX1T1 Intron 0.30 TCGA-FR-A726-01 8 94745875 94745875 C T RBM12B Missense_Mutation p.G922S 0.37 tolerated(0.15) benign(0.211) TCGA-FR-A726-01 8 94746446 94746446 G A RBM12B Silent p.F731F 0.30 TCGA-FR-A726-01 8 95189841 95189841 C T CDH17 Missense_Mutation p.E87K 0.28 deleterious(0) probably_damaging(0.971) TCGA-FR-A726-01 8 95399295 95399295 G A RAD54B Silent p.L634L 0.34 TCGA-FR-A726-01 8 95654294 95654294 G A ESRP1 Silent p.L81L 0.17 TCGA-FR-A726-01 8 98863705 98863705 C T LAPTM4B 3'UTR 0.27 TCGA-FR-A726-01 8 98900385 98900385 C T MATN2 Silent p.L19L 0.20 TCGA-FR-A726-01 8 99961236 99961236 C T OSR2 Missense_Mutation p.T19I 0.26 deleterious_low_confidence(0) benign(0.008) TCGA-FR-A726-01 9 100675781 100675781 G A C9orf156 Missense_Mutation p.P104L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 100698530 100698530 C T HEMGN Nonsense_Mutation p.W32* 0.23 TCGA-FR-A726-01 9 101052919 101052919 G A GABBR2 Missense_Mutation p.P925S 0.28 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-FR-A726-01 9 101061526 101061526 C T GABBR2 Missense_Mutation p.G841E 0.28 tolerated(0.14) benign(0.002) TCGA-FR-A726-01 9 101542555 101542555 C T ANKS6 Silent p.P428P 0.37 TCGA-FR-A726-01 9 101798471 101798471 G A COL15A1 Missense_Mutation p.G770E 0.08 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 101806860 101806860 G A COL15A1 Missense_Mutation p.G862E 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 9 101817419 101817419 C T COL15A1 Silent p.L1023L 0.29 TCGA-FR-A726-01 9 101824568 101824568 C T COL15A1 Silent p.P1191P 0.29 TCGA-FR-A726-01 9 101829206 101829206 C T COL15A1 Nonsense_Mutation p.R1232* 0.36 TCGA-FR-A726-01 9 101980835 101980835 A T ALG2 Missense_Mutation p.V211D 0.33 tolerated(0.62) benign(0.003) TCGA-FR-A726-01 9 102988353 102988353 C T INVS Missense_Mutation p.R95C 0.16 deleterious(0) probably_damaging(0.993) TCGA-FR-A726-01 9 103111612 103111612 G A TEX10 Nonsense_Mutation p.Q12* 0.29 TCGA-FR-A726-01 9 103271299 103271299 T C TMEFF1 Missense_Mutation p.Y107H 0.33 deleterious(0) benign(0.328) TCGA-FR-A726-01 9 103947729 103947729 C T LPPR1 Intron 0.34 TCGA-FR-A726-01 9 104079647 104079647 G A LPPR1 Missense_Mutation p.G272R 0.27 deleterious(0.02) probably_damaging(1) TCGA-FR-A726-01 9 104086328 104086328 G A LPPR1 Missense_Mutation p.E323K 0.20 tolerated(0.09) benign(0.107) TCGA-FR-A726-01 9 104238147 104238147 G A TMEM246 3'UTR 0.28 TCGA-FR-A726-01 9 104356757 104356757 G A PPP3R2 Silent p.S152S 0.35 TCGA-FR-A726-01 9 104433273 104433273 C T GRIN3A Missense_Mutation p.G474E 0.31 deleterious(0) benign(0.128) TCGA-FR-A726-01 9 104499725 104499725 G A GRIN3A Silent p.S179S 0.26 TCGA-FR-A726-01 9 105767265 105767265 G A CYLC2 Missense_Mutation p.G118S 0.25 tolerated(0.37) possibly_damaging(0.547) TCGA-FR-A726-01 9 106873862 106873862 G A SMC2 Missense_Mutation p.D341N 0.34 tolerated(0.06) benign(0.021) TCGA-FR-A726-01 9 107266928 107266928 C T OR13F1 Missense_Mutation p.P129S 0.34 deleterious(0) probably_damaging(0.941) TCGA-FR-A726-01 9 107289127 107289127 G A OR13C4 Missense_Mutation p.R122C 0.34 deleterious(0.05) benign(0.066) TCGA-FR-A726-01 9 107289149 107289149 G A OR13C4 Silent p.L114L 0.28 TCGA-FR-A726-01 9 107298258 107298258 G A OR13C3 Silent p.I279I 0.30 TCGA-FR-A726-01 9 107298801 107298801 G A OR13C3 Silent p.F98F 0.33 TCGA-FR-A726-01 9 107360803 107360803 G A OR13C5 Missense_Mutation p.L298F 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 9 107360950 107360950 T A OR13C5 Missense_Mutation p.I249L 0.25 tolerated(0.11) probably_damaging(0.994) TCGA-FR-A726-01 9 107360951 107360951 C T OR13C5 Silent p.V248V 0.25 TCGA-FR-A726-01 9 107361169 107361169 G A OR13C5 Missense_Mutation p.H176Y 0.35 deleterious(0.03) probably_damaging(0.91) TCGA-FR-A726-01 9 107361415 107361415 G A OR13C5 Missense_Mutation p.L94F 0.19 tolerated(1) benign(0.002) TCGA-FR-A726-01 9 107367631 107367631 G A OR13C2 Missense_Mutation p.S93F 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A726-01 9 107380230 107380230 G A OR13C9 Missense_Mutation p.L86F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A726-01 9 107457023 107457023 C T OR13D1 Silent p.S107S 0.34 TCGA-FR-A726-01 9 107457298 107457298 C T OR13D1 Missense_Mutation p.P199L 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-FR-A726-01 9 107457368 107457368 A C OR13D1 Silent p.S222S 0.06 TCGA-FR-A726-01 9 107457469 107457469 C T OR13D1 Missense_Mutation p.S256F 0.37 deleterious(0) probably_damaging(0.936) TCGA-FR-A726-01 9 107568562 107568562 G A ABCA1 Missense_Mutation p.P1475L 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 108145493 108145493 C T SLC44A1 Silent p.I574I 0.38 TCGA-FR-A726-01 9 109687800 109687800 C T ZNF462 Missense_Mutation p.P536L 0.33 possibly_damaging(0.713) TCGA-FR-A726-01 9 109688017 109688017 C T ZNF462 Silent p.S608S 0.06 TCGA-FR-A726-01 9 109690504 109690504 C T ZNF462 Silent p.F1437F 0.32 TCGA-FR-A726-01 9 111617631 111617631 C T ACTL7B Missense_Mutation p.G194R 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 111617786 111617786 G A ACTL7B Missense_Mutation p.P142L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A726-01 9 111704981 111704981 G A CTNNAL1 3'UTR 0.33 TCGA-FR-A726-01 9 111962553 111962553 G A EPB41L4B Missense_Mutation p.P670S 0.23 tolerated_low_confidence(0.22) benign(0.014) TCGA-FR-A726-01 9 112900362 112900362 C T PALM2-AKAP2 Silent p.F846F 0.25 TCGA-FR-A726-01 9 112918668 112918668 C T PALM2-AKAP2 Missense_Mutation p.A1022V 0.38 tolerated(0.11) benign(0.054) TCGA-FR-A726-01 9 113088478 113088478 G A TXNDC8 Nonsense_Mutation p.Q78* 0.31 TCGA-FR-A726-01 9 113148336 113148336 G A SVEP1 Missense_Mutation p.P3360L 0.33 probably_damaging(1) TCGA-FR-A726-01 9 113163207 113163207 C T SVEP1 Missense_Mutation p.G3250E 0.22 probably_damaging(1) TCGA-FR-A726-01 9 113170491 113170491 G A SVEP1 Silent p.L2463L 0.27 TCGA-FR-A726-01 9 113170717 113170717 G A SVEP1 Missense_Mutation p.S2388F 0.27 possibly_damaging(0.739) TCGA-FR-A726-01 9 113192631 113192631 C T SVEP1 Missense_Mutation p.G1818E 0.35 probably_damaging(1) TCGA-FR-A726-01 9 113192632 113192632 C T SVEP1 Missense_Mutation p.G1818R 0.35 probably_damaging(1) TCGA-FR-A726-01 9 113212463 113212463 C A SVEP1 Missense_Mutation p.G1327W 0.38 probably_damaging(0.996) TCGA-FR-A726-01 9 113220765 113220765 C T SVEP1 Missense_Mutation p.E1188K 0.37 benign(0.002) TCGA-FR-A726-01 9 113562887 113562887 C T MUSK Silent p.D743D 0.31 TCGA-FR-A726-01 9 113562950 113562950 C T MUSK Silent p.I764I 0.33 TCGA-FR-A726-01 9 113637647 113637647 G A LPAR1 3'UTR 0.33 TCGA-FR-A726-01 9 113703797 113703797 G A LPAR1 Missense_Mutation p.R233C 0.29 deleterious(0) benign(0.02) TCGA-FR-A726-01 9 114090195 114090195 G A OR2K2 Silent p.I173I 0.37 TCGA-FR-A726-01 9 114332461 114332461 C T PTGR1 Silent p.Q263Q 0.32 TCGA-FR-A726-01 9 114467530 114467530 G A C9orf84 Missense_Mutation p.S887F 0.30 deleterious(0) probably_damaging(0.969) TCGA-FR-A726-01 9 114803678 114803678 G A SUSD1 3'UTR 0.25 TCGA-FR-A726-01 9 115421546 115421546 C T KIAA1958 Missense_Mutation p.P450S 0.39 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A726-01 9 115421986 115421986 C T KIAA1958 Silent p.A596A 0.20 TCGA-FR-A726-01 9 115805223 115805223 G A ZFP37 Missense_Mutation p.H559Y 0.33 tolerated(0.08) probably_damaging(0.98) TCGA-FR-A726-01 9 115950708 115950708 G A FKBP15 Missense_Mutation p.H413Y 0.10 deleterious(0) benign(0.001) TCGA-FR-A726-01 9 116279900 116279900 C T RGS3 Missense_Mutation p.A585V 0.25 tolerated(0.16) benign(0.004) TCGA-FR-A726-01 9 116345774 116345774 G A RGS3 Silent p.E694E 0.17 TCGA-FR-A726-01 9 116345877 116345877 C T RGS3 Missense_Mutation p.P729S 0.34 tolerated_low_confidence(0.99) benign(0.003) TCGA-FR-A726-01 9 116346374 116346374 G A RGS3 Silent p.G894G 0.31 TCGA-FR-A726-01 9 116854905 116854905 G A KIF12 Silent p.A400A 0.29 TCGA-FR-A726-01 9 116854906 116854906 G A KIF12 Missense_Mutation p.A400V 0.29 tolerated_low_confidence(0.07) benign(0.025) TCGA-FR-A726-01 9 116859673 116859673 A G KIF12 Missense_Mutation p.V47A 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 9 117118409 117118409 C T AKNA Missense_Mutation p.G952R 0.32 deleterious(0) benign(0.319) TCGA-FR-A726-01 9 117121733 117121733 G A AKNA Intron 0.32 TCGA-FR-A726-01 9 117164978 117164978 G A DFNB31 3'UTR 0.42 TCGA-FR-A726-01 9 117168831 117168831 G A DFNB31 Silent p.F680F 0.29 TCGA-FR-A726-01 9 117185801 117185801 G A DFNB31 Silent p.F473F 0.11 TCGA-FR-A726-01 9 117242 117242 G A FOXD4 Missense_Mutation p.P293L 0.18 deleterious(0.01) benign(0.008) TCGA-FR-A726-01 9 117552634 117552634 C T TNFSF15 3'UTR 0.35 TCGA-FR-A726-01 9 117786296 117786296 G A TNC Missense_Mutation p.R2151C 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 117793847 117793847 T C TNC Missense_Mutation p.T1969A 0.43 tolerated(0.25) benign(0.217) TCGA-FR-A726-01 9 117825290 117825290 G A TNC Silent p.I1313I 0.37 TCGA-FR-A726-01 9 117825446 117825446 G A TNC Silent p.N1261N 0.31 TCGA-FR-A726-01 9 117848381 117848381 C T TNC Silent p.V543V 0.31 TCGA-FR-A726-01 9 117852892 117852892 G A TNC Silent p.L136L 0.35 TCGA-FR-A726-01 9 118949942 118949942 G A PAPPA Missense_Mutation p.E309K 0.29 tolerated(0.31) possibly_damaging(0.678) TCGA-FR-A726-01 9 118969835 118969835 G A PAPPA Missense_Mutation p.G527R 0.28 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 9 119028248 119028248 G A PAPPA Missense_Mutation p.D949N 0.32 deleterious(0.03) possibly_damaging(0.555) TCGA-FR-A726-01 9 119093530 119093530 G A PAPPA Missense_Mutation p.R1052Q 0.45 tolerated(0.39) benign(0.238) TCGA-FR-A726-01 9 119770383 119770383 C T ASTN2 Missense_Mutation p.D476N 0.25 deleterious(0) unknown(0) TCGA-FR-A726-01 9 119903639 119903639 C T ASTN2 Intron 0.27 TCGA-FR-A726-01 9 120470847 120470847 C T TLR4 Missense_Mutation p.P34S 0.29 deleterious(0.02) benign(0.052) TCGA-FR-A726-01 9 120470848 120470848 C T TLR4 Missense_Mutation p.P34L 0.29 deleterious(0) possibly_damaging(0.604) TCGA-FR-A726-01 9 120476210 120476210 G A TLR4 Missense_Mutation p.V602M 0.33 deleterious(0.05) probably_damaging(0.935) TCGA-FR-A726-01 9 121929543 121929543 C T BRINP1 Missense_Mutation p.R702Q 0.32 deleterious(0) possibly_damaging(0.885) TCGA-FR-A726-01 9 121929721 121929721 G A BRINP1 Missense_Mutation p.P643S 0.31 tolerated(0.08) probably_damaging(0.968) TCGA-FR-A726-01 9 121976336 121976336 C T BRINP1 Silent p.Q261Q 0.38 TCGA-FR-A726-01 9 123156862 123156862 C T CDK5RAP2 Missense_Mutation p.E1836K 0.29 deleterious(0) benign(0.122) TCGA-FR-A726-01 9 123177408 123177408 G A CDK5RAP2 Nonsense_Mutation p.R1403* 0.33 TCGA-FR-A726-01 9 123768264 123768264 G A C5 Missense_Mutation p.S832F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 123904426 123904426 C T CNTRL Missense_Mutation p.H917Y 0.33 benign(0.285) TCGA-FR-A726-01 9 124914582 124914582 G A NDUFA8 Missense_Mutation p.P53S 0.40 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 125273251 125273251 C T OR1J2 Silent p.T57T 0.23 TCGA-FR-A726-01 9 125273252 125273252 C T OR1J2 Missense_Mutation p.P58S 0.17 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-FR-A726-01 9 125273253 125273253 C T OR1J2 Missense_Mutation p.P58L 0.17 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-FR-A726-01 9 125329830 125329830 G A OR1L8 Silent p.S309S 0.28 TCGA-FR-A726-01 9 125424513 125424513 C T OR1L1 Silent p.V173V 0.36 TCGA-FR-A726-01 9 125438015 125438015 G A OR1L3 Missense_Mutation p.G203R 0.31 deleterious(0.01) benign(0.443) TCGA-FR-A726-01 9 125486937 125486937 C T OR1L4 Silent p.I223I 0.21 TCGA-FR-A726-01 9 125486970 125486970 G A OR1L4 Silent p.G234G 0.23 TCGA-FR-A726-01 9 125582336 125582336 G A PDCL 3'UTR 0.23 TCGA-FR-A726-01 9 125673462 125673462 T A ZBTB6 Missense_Mutation p.Y297F 0.38 tolerated(0.68) benign(0.001) TCGA-FR-A726-01 9 127265635 127265635 G A NR5A1 Missense_Mutation p.P14S 0.21 deleterious(0.01) possibly_damaging(0.773) TCGA-FR-A726-01 9 129455863 129455863 C T LMX1B Nonsense_Mutation p.Q268* 0.32 TCGA-FR-A726-01 9 129724579 129724579 G A RALGPS1 Missense_Mutation p.R4K 0.38 tolerated_low_confidence(0.16) benign(0.002) TCGA-FR-A726-01 9 130428504 130428504 C T STXBP1 Silent p.S241S 0.34 TCGA-FR-A726-01 9 130485599 130485599 C T TTC16 Missense_Mutation p.L287F 0.29 tolerated(0.73) benign(0.029) TCGA-FR-A726-01 9 130486980 130486980 G A TTC16 Intron 0.19 TCGA-FR-A726-01 9 130509499 130509499 C T SH2D3C Missense_Mutation p.M397I 0.34 deleterious(0.05) benign(0.04) TCGA-FR-A726-01 9 130869423 130869423 C T SLC25A25 Missense_Mutation p.P431L 0.34 deleterious(0) probably_damaging(0.995) TCGA-FR-A726-01 9 130914193 130914193 G A LCN2 Missense_Mutation p.G122R 0.38 deleterious(0.04) benign(0.303) TCGA-FR-A726-01 9 130914493 130914493 G C LCN2 Missense_Mutation p.K169N 0.23 deleterious(0) probably_damaging(0.982) TCGA-FR-A726-01 9 131010864 131010864 C T DNM1 Silent p.A636A 0.37 TCGA-FR-A726-01 9 131019965 131019965 T A GOLGA2 Missense_Mutation p.Q851L 0.29 tolerated(0.05) probably_damaging(0.913) TCGA-FR-A726-01 9 131038521 131038521 T C SWI5 Missense_Mutation p.F33L 0.36 tolerated_low_confidence(0.64) benign(0.001) TCGA-FR-A726-01 9 131152071 131152071 C T URM1 3'UTR 0.10 TCGA-FR-A726-01 9 131296136 131296136 G A GLE1 Missense_Mutation p.D518N 0.35 tolerated(0.13) possibly_damaging(0.744) TCGA-FR-A726-01 9 131343213 131343213 T A SPTAN1 Missense_Mutation p.S446T 0.28 tolerated(0.25) benign(0.012) TCGA-FR-A726-01 9 131670622 131670622 C T LRRC8A Silent p.F393F 0.36 TCGA-FR-A726-01 9 131804779 131804779 C T FAM73B Missense_Mutation p.P98L 0.26 tolerated(0.07) benign(0.297) TCGA-FR-A726-01 9 131857719 131857719 T C CRAT Missense_Mutation p.D613G 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-FR-A726-01 9 132482910 132482910 G A PRRX2 Silent p.R161R 0.09 TCGA-FR-A726-01 9 132889814 132889814 C T GPR107 Missense_Mutation p.A518V 0.27 tolerated(0.05) benign(0.085) TCGA-FR-A726-01 9 133729530 133729530 C T ABL1 Silent p.N72N 0.08 TCGA-FR-A726-01 9 133961076 133961076 G A LAMC3 Missense_Mutation p.R1399K 0.27 tolerated(0.72) benign(0.003) TCGA-FR-A726-01 9 134072872 134072872 C T NUP214 Silent p.L1331L 0.32 TCGA-FR-A726-01 9 134136214 134136214 G A FAM78A Missense_Mutation p.R283W 0.07 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FR-A726-01 9 134351121 134351121 G T PRRC2B Missense_Mutation p.G1202V 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 134351590 134351590 C T PRRC2B Silent p.S1358S 0.35 TCGA-FR-A726-01 9 134585213 134585213 G A RAPGEF1 5'UTR 0.24 TCGA-FR-A726-01 9 135374153 135374153 C T C9orf171 Silent p.I125I 0.30 TCGA-FR-A726-01 9 135545421 135545421 C T DDX31 Silent p.R72R 0.56 TCGA-FR-A726-01 9 135545422 135545422 C T DDX31 Missense_Mutation p.R72K 0.56 tolerated_low_confidence(0.35) benign(0.067) TCGA-FR-A726-01 9 135554965 135554965 C T GTF3C4 Silent p.L653L 0.25 TCGA-FR-A726-01 9 135779199 135779199 G A TSC1 Missense_Mutation p.P683S 0.25 tolerated(0.21) possibly_damaging(0.555) TCGA-FR-A726-01 9 135796822 135796822 G A TSC1 Missense_Mutation p.P222L 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 135798865 135798865 G A TSC1 Silent p.V126V 0.37 TCGA-FR-A726-01 9 135863815 135863815 C T GFI1B Missense_Mutation p.S157F 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-FR-A726-01 9 135962298 135962298 A G CELP RNA 0.27 TCGA-FR-A726-01 9 135978197 135978197 G A RALGDS Missense_Mutation p.R628W 0.19 deleterious(0.04) unknown(0) TCGA-FR-A726-01 9 136082625 136082625 C T OBP2B Missense_Mutation p.G126R 0.35 deleterious(0) probably_damaging(0.992) TCGA-FR-A726-01 9 136198540 136198540 G A SURF6 3'UTR 0.40 TCGA-FR-A726-01 9 136341383 136341383 C T SLC2A6 Missense_Mutation p.G180R 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 136501809 136501809 G A DBH Missense_Mutation p.D106N 0.39 tolerated(0.1) benign(0.089) TCGA-FR-A726-01 9 136508538 136508538 G A DBH Missense_Mutation p.E250K 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A726-01 9 136550357 136550357 G A SARDH Silent p.F707F 0.29 TCGA-FR-A726-01 9 137593140 137593140 C T COL5A1 Silent p.I205I 0.40 TCGA-FR-A726-01 9 137802992 137802992 G A FCN1 Silent p.V240V 0.30 TCGA-FR-A726-01 9 138379789 138379789 C A PPP1R26 Missense_Mutation p.P1145T 0.32 deleterious(0.03) probably_damaging(0.958) TCGA-FR-A726-01 9 138379790 138379790 C T PPP1R26 Missense_Mutation p.P1145L 0.29 tolerated(0.14) probably_damaging(0.958) TCGA-FR-A726-01 9 138642882 138642882 C T KCNT1 Silent p.I143I 0.32 TCGA-FR-A726-01 9 138650349 138650349 C T KCNT1 Silent p.F283F 0.23 TCGA-FR-A726-01 9 138657488 138657488 C T KCNT1 Silent p.L407L 0.33 TCGA-FR-A726-01 9 138676615 138676615 C T KCNT1 Silent p.I1012I 0.25 TCGA-FR-A726-01 9 138703184 138703184 C T CAMSAP1 Missense_Mutation p.V1594M 0.43 deleterious(0.01) benign(0.364) TCGA-FR-A726-01 9 139230424 139230424 A C GPSM1 Missense_Mutation p.T98P 0.28 deleterious(0) benign(0.345) TCGA-FR-A726-01 9 139298541 139298541 G A SDCCAG3 Missense_Mutation p.R392W 0.30 tolerated(0.08) possibly_damaging(0.663) TCGA-FR-A726-01 9 139301823 139301823 G A SDCCAG3 Missense_Mutation p.P198L 0.21 tolerated(0.36) benign(0.004) TCGA-FR-A726-01 9 139353607 139353607 G A SEC16A Silent p.T1796T 0.10 TCGA-FR-A726-01 9 139877933 139877933 G A LCNL1 5'UTR 0.10 TCGA-FR-A726-01 9 139916431 139916431 G A ABCA2 Missense_Mutation p.P197L 0.33 tolerated_low_confidence(0.06) benign(0.004) TCGA-FR-A726-01 9 139916432 139916432 G A ABCA2 Missense_Mutation p.P197S 0.33 tolerated_low_confidence(0.21) benign(0.003) TCGA-FR-A726-01 9 139935137 139935137 G A NPDC1 Silent p.S203S 0.33 TCGA-FR-A726-01 9 139983450 139983450 C T MAN1B1 Missense_Mutation p.S153L 0.26 tolerated(0.3) benign(0.001) TCGA-FR-A726-01 9 140082303 140082303 G A ANAPC2 Missense_Mutation p.P124S 0.30 tolerated(0.15) benign(0.064) TCGA-FR-A726-01 9 140196327 140196327 G A NRARP Silent p.F18F 0.33 TCGA-FR-A726-01 9 140243568 140243568 G T EXD3 Silent p.P608P 0.12 TCGA-FR-A726-01 9 140243569 140243569 G A EXD3 Missense_Mutation p.P608L 0.12 tolerated(0.06) benign(0) TCGA-FR-A726-01 9 140343836 140343836 C T NSMF 3'UTR 0.42 TCGA-FR-A726-01 9 140347223 140347223 G A NSMF Missense_Mutation p.R366C 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FR-A726-01 9 140809127 140809127 C T CACNA1B Missense_Mutation p.S215F 0.34 deleterious(0) benign(0.218) TCGA-FR-A726-01 9 140968494 140968494 C T CACNA1B Silent p.F1611F 0.29 TCGA-FR-A726-01 9 140991032 140991032 C T CACNA1B Missense_Mutation p.R1731W 0.48 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 14719990 14719990 C T CER1 3'UTR 0.52 TCGA-FR-A726-01 9 14722715 14722715 G T CER1 5'UTR 0.56 TCGA-FR-A726-01 9 14750128 14750128 C T FREM1 Missense_Mutation p.G1852R 0.50 tolerated(0.12) benign(0.019) TCGA-FR-A726-01 9 14776062 14776062 C T FREM1 Missense_Mutation p.D1528N 0.47 deleterious(0) benign(0.288) TCGA-FR-A726-01 9 14788961 14788961 G A FREM1 Missense_Mutation p.S1378F 0.74 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 9 14792882 14792882 C T FREM1 Silent p.K1280K 0.64 TCGA-FR-A726-01 9 14806700 14806700 G A FREM1 Missense_Mutation p.P1078L 0.50 deleterious(0) probably_damaging(0.984) TCGA-FR-A726-01 9 14812871 14812871 G A FREM1 Silent p.V944V 0.57 TCGA-FR-A726-01 9 14863874 14863874 C T FREM1 Missense_Mutation p.E88K 0.59 deleterious(0.02) possibly_damaging(0.691) TCGA-FR-A726-01 9 15465423 15465423 C G PSIP1 3'UTR 0.56 TCGA-FR-A726-01 9 18639267 18639267 C T ADAMTSL1 Missense_Mutation p.T231I 0.50 deleterious(0) probably_damaging(0.963) TCGA-FR-A726-01 9 18639268 18639268 C T ADAMTSL1 Silent p.T231T 0.50 TCGA-FR-A726-01 9 2081995 2081995 C T SMARCA2 Missense_Mutation p.S783L 0.58 benign(0.022) TCGA-FR-A726-01 9 32500875 32500875 A G DDX58 Missense_Mutation p.F57L 0.13 tolerated(0.35) benign(0.39) TCGA-FR-A726-01 9 32550901 32550901 G A TOPORS Silent p.P23P 0.52 TCGA-FR-A726-01 9 32633189 32633189 C T TAF1L Missense_Mutation p.D797N 0.52 tolerated(0.52) benign(0.111) TCGA-FR-A726-01 9 32984667 32984667 G A APTX Silent p.L244L 0.29 TCGA-FR-A726-01 9 33068887 33068887 C A SMU1 Missense_Mutation p.A146S 0.40 tolerated(0.06) possibly_damaging(0.45) TCGA-FR-A726-01 9 33342786 33342786 C T NFX1 Missense_Mutation p.R720C 0.28 deleterious(0.02) possibly_damaging(0.608) TCGA-FR-A726-01 9 33385718 33385718 G A AQP7 Silent p.A224A 0.27 TCGA-FR-A726-01 9 33442020 33442020 G A AQP3 3'UTR 0.34 TCGA-FR-A726-01 9 33442540 33442540 G A AQP3 Intron 0.27 TCGA-FR-A726-01 9 33443002 33443002 G A AQP3 Intron 0.38 TCGA-FR-A726-01 9 33443864 33443864 C T AQP3 Silent p.Q45Q 0.29 TCGA-FR-A726-01 9 33465810 33465810 G A NOL6 Missense_Mutation p.S817L 0.10 tolerated(0.09) benign(0.108) TCGA-FR-A726-01 9 33467706 33467706 G A NOL6 Nonsense_Mutation p.R529* 0.07 TCGA-FR-A726-01 9 33675852 33675852 T A PTENP1 RNA 0.35 TCGA-FR-A726-01 9 33798506 33798506 G C PRSS3 Missense_Mutation p.K216N 0.34 deleterious(0.01) possibly_damaging(0.781) TCGA-FR-A726-01 9 34107461 34107461 T A DCAF12 Missense_Mutation p.I146F 0.35 deleterious(0) possibly_damaging(0.844) TCGA-FR-A726-01 9 34257854 34257854 G A KIF24 Missense_Mutation p.S584F 0.07 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 34512153 34512153 C T DNAI1 Missense_Mutation p.S453F 0.31 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 34552687 34552687 C T CNTFR Missense_Mutation p.E312K 0.42 tolerated(0.05) possibly_damaging(0.636) TCGA-FR-A726-01 9 34623493 34623493 G A ARID3C Missense_Mutation p.P265L 0.36 tolerated(0.43) benign(0.004) TCGA-FR-A726-01 9 35044640 35044640 G A C9orf131 Missense_Mutation p.E672K 0.36 tolerated(0.25) benign(0.007) TCGA-FR-A726-01 9 35092218 35092218 G A PIGO Missense_Mutation p.R556C 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 35548463 35548463 C T RUSC2 Missense_Mutation p.P649S 0.25 tolerated(0.23) benign(0.219) TCGA-FR-A726-01 9 35561370 35561370 C T RUSC2 Silent p.S1514S 0.28 TCGA-FR-A726-01 9 35618332 35618332 C T CD72 5'UTR 0.30 TCGA-FR-A726-01 9 35618333 35618333 C T CD72 5'UTR 0.29 TCGA-FR-A726-01 9 35684750 35684750 G A TPM2 Intron 0.29 TCGA-FR-A726-01 9 35707817 35707817 G A TLN1 Missense_Mutation p.R1515C 0.06 deleterious(0) benign(0.205) TCGA-FR-A726-01 9 35710666 35710666 G A TLN1 Silent p.A1406A 0.36 TCGA-FR-A726-01 9 35809942 35809942 G A SPAG8 Intron 0.31 TCGA-FR-A726-01 9 35825991 35825991 G A FAM221B Silent p.S56S 0.06 TCGA-FR-A726-01 9 35957240 35957240 C T OR2S2 Missense_Mutation p.G286R 0.37 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 9 35957861 35957861 C T OR2S2 Missense_Mutation p.V79I 0.27 tolerated(0.58) benign(0.014) TCGA-FR-A726-01 9 36171078 36171078 G A CCIN Missense_Mutation p.V527M 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-FR-A726-01 9 37015107 37015107 G A PAX5 Silent p.I99I 0.30 TCGA-FR-A726-01 9 37357032 37357032 C T ZCCHC7 Missense_Mutation p.R467C 0.26 tolerated(0.19) possibly_damaging(0.613) TCGA-FR-A726-01 9 37708405 37708405 C T FRMPD1 Missense_Mutation p.A90V 0.38 deleterious(0.03) possibly_damaging(0.872) TCGA-FR-A726-01 9 37740406 37740406 C T FRMPD1 Silent p.F627F 0.34 TCGA-FR-A726-01 9 37740493 37740493 C T FRMPD1 Silent p.L656L 0.35 TCGA-FR-A726-01 9 37740884 37740884 G A FRMPD1 Intron 0.32 TCGA-FR-A726-01 9 37744478 37744478 C T FRMPD1 Missense_Mutation p.P817S 0.33 tolerated(0.24) benign(0.017) TCGA-FR-A726-01 9 37887836 37887836 G A SLC25A51 Missense_Mutation p.R238C 0.24 tolerated(0.08) benign(0.12) TCGA-FR-A726-01 9 3829399 3829399 G A GLIS3 Missense_Mutation p.S856L 0.53 tolerated(0.08) benign(0.138) TCGA-FR-A726-01 9 38396306 38396306 C T ALDH1B1 Silent p.F187F 0.27 TCGA-FR-A726-01 9 39144255 39144255 C T CNTNAP3 Missense_Mutation p.G580S 0.17 deleterious(0) probably_damaging(0.97) TCGA-FR-A726-01 9 39171472 39171472 G A CNTNAP3 Silent p.F409F 0.30 TCGA-FR-A726-01 9 39176011 39176011 G A CNTNAP3 Missense_Mutation p.L336F 0.31 deleterious(0) probably_damaging(0.914) TCGA-FR-A726-01 9 40702793 40702793 C T SPATA31A3 Silent p.S150S 0.22 TCGA-FR-A726-01 9 40705517 40705517 C T SPATA31A3 Silent p.L1058L 0.30 TCGA-FR-A726-01 9 40705685 40705685 G A SPATA31A3 Silent p.R1114R 0.35 TCGA-FR-A726-01 9 4118592 4118592 C T GLIS3 Missense_Mutation p.A296T 0.17 tolerated(0.13) benign(0.01) TCGA-FR-A726-01 9 4125879 4125879 C T GLIS3 Missense_Mutation p.V151I 0.46 tolerated(0.06) probably_damaging(0.987) TCGA-FR-A726-01 9 41963934 41963934 C T RP11-204M4.2 RNA 0.09 TCGA-FR-A726-01 9 42410411 42410411 G A ANKRD20A2 Silent p.E800E 0.13 TCGA-FR-A726-01 9 43626664 43626664 G A SPATA31A6 Missense_Mutation p.P675S 0.06 tolerated(0.06) possibly_damaging(0.654) TCGA-FR-A726-01 9 43627156 43627156 G A SPATA31A6 Missense_Mutation p.P511S 0.30 tolerated(0.53) benign(0.041) TCGA-FR-A726-01 9 43815949 43815949 G A CNTNAP3B Missense_Mutation p.E235K 0.16 deleterious(0) probably_damaging(0.978) TCGA-FR-A726-01 9 43818167 43818167 C T CNTNAP3B Missense_Mutation p.P352S 0.42 tolerated(0.24) benign(0.032) TCGA-FR-A726-01 9 449879 449879 G A DOCK8 Silent p.K1971K 0.67 TCGA-FR-A726-01 9 4576054 4576054 G A SLC1A1 Missense_Mutation p.R310Q 0.56 deleterious(0.01) probably_damaging(0.948) TCGA-FR-A726-01 9 5570171 5570171 C T PDCD1LG2 3'UTR 0.63 TCGA-FR-A726-01 9 6328445 6328445 G A TPD52L3 5'UTR 0.75 TCGA-FR-A726-01 9 6331008 6331008 G A TPD52L3 3'Flank 0.51 TCGA-FR-A726-01 9 6475493 6475493 G T UHRF2 Missense_Mutation p.K322N 0.08 tolerated(0.18) benign(0.154) TCGA-FR-A726-01 9 6553455 6553455 C A GLDC Silent p.R790R 0.70 TCGA-FR-A726-01 9 6556173 6556173 C T GLDC Missense_Mutation p.G728R 0.38 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 69200576 69200576 G A FOXD4L6 Missense_Mutation p.P346L 0.41 deleterious_low_confidence(0.01) benign(0) TCGA-FR-A726-01 9 71394973 71394973 C T FAM122A 5'UTR 0.43 TCGA-FR-A726-01 9 71503965 71503965 G A PIP5K1B Silent p.V129V 0.25 TCGA-FR-A726-01 9 71532484 71532484 C T PIP5K1B Silent p.I264I 0.09 TCGA-FR-A726-01 9 71532544 71532544 G A PIP5K1B Silent p.E284E 0.36 TCGA-FR-A726-01 9 71532662 71532662 G A PIP5K1B Missense_Mutation p.E324K 0.34 deleterious(0.02) benign(0.016) TCGA-FR-A726-01 9 72046102 72046102 C T APBA1 3'UTR 0.26 TCGA-FR-A726-01 9 72659033 72659033 G A MAMDC2 5'UTR 0.24 TCGA-FR-A726-01 9 72758679 72758679 C T MAMDC2 Missense_Mutation p.P450S 0.31 tolerated(0.65) probably_damaging(1) TCGA-FR-A726-01 9 72939047 72939047 C T SMC5 Silent p.L795L 0.30 TCGA-FR-A726-01 9 73167834 73167834 G A TRPM3 Missense_Mutation p.T1155I 0.24 tolerated(0.29) probably_damaging(0.951) TCGA-FR-A726-01 9 73398907 73398907 C G TRPM3 Intron 0.24 TCGA-FR-A726-01 9 73399022 73399022 C T TRPM3 Missense_Mutation p.G383R 0.34 tolerated(0.12) probably_damaging(0.975) TCGA-FR-A726-01 9 74865868 74865868 G A GDA 3'Flank 0.37 TCGA-FR-A726-01 9 75263558 75263558 C T TMC1 5'UTR 0.29 TCGA-FR-A726-01 9 75780054 75780054 G A ANXA1 Missense_Mutation p.R212K 0.36 tolerated(1) benign(0) TCGA-FR-A726-01 9 77300575 77300575 C T RORB 3'UTR 0.26 TCGA-FR-A726-01 9 77354841 77354841 C T TRPM6 Missense_Mutation p.G1762E 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 77442757 77442757 C T TRPM6 Missense_Mutation p.G260R 0.35 deleterious(0) probably_damaging(0.925) TCGA-FR-A726-01 9 78638703 78638703 G A PCSK5 Missense_Mutation p.G154E 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 78686790 78686790 A G PCSK5 Silent p.Q290Q 0.32 TCGA-FR-A726-01 9 78784740 78784740 G A PCSK5 Silent p.R580R 0.07 TCGA-FR-A726-01 9 78804067 78804067 G A PCSK5 Missense_Mutation p.R813K 0.31 tolerated(0.17) benign(0.047) TCGA-FR-A726-01 9 78842419 78842419 G A PCSK5 Missense_Mutation p.G876E 0.39 deleterious(0.03) possibly_damaging(0.784) TCGA-FR-A726-01 9 78938019 78938019 C T PCSK5 Missense_Mutation p.P1358L 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 78943055 78943055 G A PCSK5 Silent p.E1463E 0.06 TCGA-FR-A726-01 9 79117975 79117975 C T GCNT1 Silent p.N226N 0.31 TCGA-FR-A726-01 9 79118701 79118701 C T GCNT1 3'UTR 0.29 TCGA-FR-A726-01 9 79318509 79318509 G A PRUNE2 Silent p.L2674L 0.25 TCGA-FR-A726-01 9 79319870 79319870 C T PRUNE2 Silent p.E2440E 0.27 TCGA-FR-A726-01 9 79319928 79319928 G A PRUNE2 Missense_Mutation p.S2421F 0.34 tolerated(0.17) probably_damaging(0.969) TCGA-FR-A726-01 9 79320428 79320428 G A PRUNE2 Silent p.S2254S 0.32 TCGA-FR-A726-01 9 79320856 79320856 C T PRUNE2 Missense_Mutation p.E2112K 0.39 deleterious(0.01) probably_damaging(0.958) TCGA-FR-A726-01 9 79321534 79321534 G A PRUNE2 Missense_Mutation p.P1886S 0.21 deleterious(0.04) benign(0.209) TCGA-FR-A726-01 9 79322118 79322118 C T PRUNE2 Missense_Mutation p.S1691N 0.42 tolerated(0.47) benign(0.017) TCGA-FR-A726-01 9 79323196 79323196 C T PRUNE2 Missense_Mutation p.G1332R 0.33 tolerated(0.45) benign(0.01) TCGA-FR-A726-01 9 79324980 79324980 C T PRUNE2 Missense_Mutation p.S737N 0.41 tolerated(1) benign(0.003) TCGA-FR-A726-01 9 79325331 79325331 G A PRUNE2 Missense_Mutation p.S620L 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 9 79326224 79326224 G T PRUNE2 Silent p.P322P 0.41 TCGA-FR-A726-01 9 79403317 79403317 C T PRUNE2 Intron 0.25 TCGA-FR-A726-01 9 79634648 79634648 C T FOXB2 Silent p.I26I 0.37 TCGA-FR-A726-01 9 79827939 79827939 C T VPS13A Missense_Mutation p.R204C 0.29 tolerated(0.06) benign(0.002) TCGA-FR-A726-01 9 79959124 79959124 G A VPS13A Missense_Mutation p.R2361K 0.40 tolerated(0.06) benign(0.005) TCGA-FR-A726-01 9 80944010 80944010 C T PSAT1 3'UTR 0.33 TCGA-FR-A726-01 9 82323056 82323056 C G TLE4 Silent p.V320V 0.31 TCGA-FR-A726-01 9 8317701 8317701 T A PTPRD 3'UTR 0.58 TCGA-FR-A726-01 9 8389246 8389246 C T PTPRD Missense_Mutation p.E1458K 0.55 deleterious(0.02) probably_damaging(0.995) TCGA-FR-A726-01 9 84531008 84531008 C T SPATA31D5P RNA 0.36 TCGA-FR-A726-01 9 84531863 84531863 G A SPATA31D5P RNA 0.30 TCGA-FR-A726-01 9 84532751 84532751 C T SPATA31D5P RNA 0.33 TCGA-FR-A726-01 9 84533018 84533018 G A SPATA31D5P RNA 0.24 TCGA-FR-A726-01 9 84533985 84533985 G A SPATA31D5P RNA 0.25 TCGA-FR-A726-01 9 84534422 84534422 C T SPATA31D5P RNA 0.29 TCGA-FR-A726-01 9 84564786 84564786 G A RP11-383M4.6 Intron 0.28 TCGA-FR-A726-01 9 84606577 84606577 C T SPATA31D1 Missense_Mutation p.L398F 0.30 tolerated(0.71) benign(0.062) TCGA-FR-A726-01 9 84607145 84607145 C T SPATA31D1 Missense_Mutation p.P587L 0.28 tolerated(0.33) benign(0.174) TCGA-FR-A726-01 9 8528696 8528696 G A PTPRD Missense_Mutation p.L146F 0.50 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 8633430 8633430 G A PTPRD Missense_Mutation p.S80L 0.58 deleterious(0) probably_damaging(0.991) TCGA-FR-A726-01 9 86368203 86368203 C T GKAP1 Silent p.Q270Q 0.36 TCGA-FR-A726-01 9 86586869 86586869 G A HNRNPK Missense_Mutation p.P294L 0.39 tolerated(0.52) benign(0.424) TCGA-FR-A726-01 9 90321180 90321180 C T DAPK1 Missense_Mutation p.T1065I 0.16 tolerated(0.06) benign(0.015) TCGA-FR-A726-01 9 90497927 90497927 C T SPATA31E1 Nonsense_Mutation p.Q41* 0.37 TCGA-FR-A726-01 9 90500303 90500303 G A SPATA31E1 Missense_Mutation p.D301N 0.33 tolerated(1) benign(0.002) TCGA-FR-A726-01 9 90502007 90502007 C T SPATA31E1 Missense_Mutation p.P869S 0.11 tolerated(0.35) possibly_damaging(0.525) TCGA-FR-A726-01 9 90502394 90502394 G A SPATA31E1 Missense_Mutation p.E998K 0.32 tolerated(0.05) possibly_damaging(0.674) TCGA-FR-A726-01 9 90534183 90534183 C T SPATA31C1 Intron 0.22 TCGA-FR-A726-01 9 90535448 90535448 C T SPATA31C1 RNA 0.35 TCGA-FR-A726-01 9 90535452 90535452 C T SPATA31C1 RNA 0.07 TCGA-FR-A726-01 9 91077649 91077649 C T SPIN1 Missense_Mutation p.L114F 0.33 tolerated(0.06) benign(0.012) TCGA-FR-A726-01 9 91262462 91262462 C T RP13-60M5.2 RNA 0.26 TCGA-FR-A726-01 9 91606975 91606975 G A C9orf47 3'UTR 0.43 TCGA-FR-A726-01 9 91617156 91617156 C T S1PR3 Silent p.H347H 0.30 TCGA-FR-A726-01 9 91617231 91617231 G A S1PR3 Silent p.Q372Q 0.30 TCGA-FR-A726-01 9 91657068 91657068 C T SHC3 Silent p.G411G 0.32 TCGA-FR-A726-01 9 91667027 91667027 G A SHC3 Missense_Mutation p.S296F 0.21 deleterious(0) possibly_damaging(0.866) TCGA-FR-A726-01 9 93375656 93375656 C T DIRAS2 Missense_Mutation p.A152T 0.38 deleterious(0) probably_damaging(0.994) TCGA-FR-A726-01 9 93606222 93606222 C T SYK Silent p.P14P 0.31 TCGA-FR-A726-01 9 93624602 93624602 A T SYK Silent p.G231G 0.29 TCGA-FR-A726-01 9 94495472 94495472 G A ROR2 Missense_Mutation p.P290L 0.31 deleterious(0.02) benign(0.443) TCGA-FR-A726-01 9 94877666 94877666 C T SPTLC1 5'Flank 0.26 TCGA-FR-A726-01 9 95033876 95033876 G A IARS Missense_Mutation p.P351L 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 9 95274316 95274316 C T ECM2 Missense_Mutation p.G383S 0.21 tolerated(0.17) possibly_damaging(0.621) TCGA-FR-A726-01 9 95396671 95396671 C T IPPK Silent p.T389T 0.33 TCGA-FR-A726-01 9 95609536 95609536 G A ZNF484 Silent p.L513L 0.30 TCGA-FR-A726-01 9 95610777 95610777 G A ZNF484 Nonsense_Mutation p.Q100* 0.32 TCGA-FR-A726-01 9 95646241 95646241 G A RP11-526D8.7 RNA 0.25 TCGA-FR-A726-01 9 95646877 95646877 G A RP11-526D8.7 RNA 0.26 TCGA-FR-A726-01 9 95840142 95840142 G A SUSD3 Missense_Mutation p.E98K 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 9 95872963 95872963 C T C9orf89 Silent p.A88A 0.33 TCGA-FR-A726-01 9 95875314 95875314 C T C9orf89 Silent p.F159F 0.32 TCGA-FR-A726-01 9 95875315 95875315 T C C9orf89 Missense_Mutation p.S160P 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 9 95888692 95888692 C T NINJ1 Missense_Mutation p.V102I 0.35 deleterious(0.03) probably_damaging(0.935) TCGA-FR-A726-01 9 96024152 96024152 C T WNK2 Silent p.T1041T 0.30 TCGA-FR-A726-01 9 96051641 96051641 G T WNK2 Silent p.G1572G 0.28 TCGA-FR-A726-01 9 97082686 97082686 G A NUTM2F Missense_Mutation p.P391L 0.30 deleterious(0) probably_damaging(0.974) TCGA-FR-A726-01 9 97329715 97329715 G A FBP2 Intron 0.31 TCGA-FR-A726-01 9 97333857 97333857 C T FBP2 Missense_Mutation p.D152N 0.30 deleterious(0.03) possibly_damaging(0.707) TCGA-FR-A726-01 9 98211496 98211496 G A PTCH1 Missense_Mutation p.S1220F 0.38 tolerated(0.15) benign(0.407) TCGA-FR-A726-01 9 98229541 98229541 A G PTCH1 Missense_Mutation p.V806A 0.30 deleterious(0.01) probably_damaging(0.951) TCGA-FR-A726-01 9 98997699 98997699 G A HSD17B3 3'UTR 0.26 TCGA-FR-A726-01 9 99489462 99489462 C T RP11-535M15.2 RNA 0.22 TCGA-FR-A726-01 9 99580875 99580875 G A ZNF782 Missense_Mutation p.P477L 0.29 tolerated(0.09) possibly_damaging(0.65) TCGA-FR-A726-01 9 99694495 99694495 G A NUTM2G Missense_Mutation p.V170M 0.23 tolerated(0.1) benign(0.261) TCGA-FR-A726-01 X 100103676 100103676 G A NOX1 Missense_Mutation p.S504F 0.07 tolerated(1) benign(0.008) TCGA-FR-A726-01 X 100532650 100532650 G A TAF7L Missense_Mutation p.P298L 0.66 deleterious(0.02) benign(0.048) TCGA-FR-A726-01 X 10109588 10109588 C T WWC3 3'UTR 0.14 TCGA-FR-A726-01 X 101139430 101139430 C T ZMAT1 Silent p.K323K 0.73 TCGA-FR-A726-01 X 101576975 101576975 A C NXF2 Missense_Mutation p.K451Q 0.31 tolerated(0.16) benign(0.057) TCGA-FR-A726-01 X 10176264 10176264 C T CLCN4 Silent p.F341F 0.81 TCGA-FR-A726-01 X 101818231 101818231 G A NXF4 RNA 0.68 TCGA-FR-A726-01 X 101826446 101826446 C T NXF4 RNA 0.69 TCGA-FR-A726-01 X 102339282 102339282 C T NXF3 Nonsense_Mutation p.W113* 0.71 TCGA-FR-A726-01 X 103268065 103268065 C T H2BFWT Silent p.Q56Q 0.67 TCGA-FR-A726-01 X 103349344 103349344 G A SLC25A53 Silent p.I199I 0.70 TCGA-FR-A726-01 X 104463627 104463627 C T TEX13A 3'UTR 0.65 TCGA-FR-A726-01 X 10463698 10463698 C T MID1 Missense_Mutation p.E264K 0.74 tolerated(0.16) benign(0.005) TCGA-FR-A726-01 X 105168911 105168911 G A NRK Missense_Mutation p.R1068Q 0.69 tolerated(0.28) benign(0.024) TCGA-FR-A726-01 X 105169000 105169000 C T NRK Nonsense_Mutation p.Q1098* 0.62 TCGA-FR-A726-01 X 105855579 105855579 C T CXorf57 Missense_Mutation p.P90L 0.66 tolerated(0.58) benign(0.022) TCGA-FR-A726-01 X 106092554 106092554 G A TBC1D8B Intron 0.69 TCGA-FR-A726-01 X 106117053 106117053 A G TBC1D8B Missense_Mutation p.Q1074R 0.61 tolerated(0.13) benign(0.067) TCGA-FR-A726-01 X 106171614 106171614 G A CLDN2 Missense_Mutation p.M52I 0.59 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 X 106310817 106310817 G A RBM41 Silent p.L394L 0.75 TCGA-FR-A726-01 X 106397352 106397352 G A NUP62CL Missense_Mutation p.H107Y 0.54 tolerated(0.16) benign(0.005) TCGA-FR-A726-01 X 106769952 106769952 G A FRMPD3 Missense_Mutation p.R78Q 0.68 tolerated(0.07) benign(0.146) TCGA-FR-A726-01 X 107084588 107084588 C T MID2 Silent p.S231S 0.63 TCGA-FR-A726-01 X 107160930 107160930 G A MID2 Missense_Mutation p.E466K 0.74 tolerated_low_confidence(0.4) benign(0) TCGA-FR-A726-01 X 107414138 107414138 C T COL4A6 Missense_Mutation p.G1097E 0.63 probably_damaging(1) TCGA-FR-A726-01 X 107423798 107423798 C T COL4A6 Missense_Mutation p.G694E 0.18 probably_damaging(1) TCGA-FR-A726-01 X 107865093 107865093 C T COL4A5 Missense_Mutation p.P913L 0.54 unknown(0) TCGA-FR-A726-01 X 107911605 107911605 C T COL4A5 Missense_Mutation p.P1221S 0.61 unknown(0) TCGA-FR-A726-01 X 107911653 107911653 C T COL4A5 Missense_Mutation p.P1237S 0.55 unknown(0) TCGA-FR-A726-01 X 108911467 108911467 C T ACSL4 Missense_Mutation p.G434E 0.75 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 X 110035366 110035366 G A CHRDL1 Missense_Mutation p.S15L 0.78 tolerated(0.69) benign(0.013) TCGA-FR-A726-01 X 110416246 110416246 G A PAK3 Missense_Mutation p.R292K 0.72 tolerated(0.15) possibly_damaging(0.705) TCGA-FR-A726-01 X 110489944 110489944 A G CAPN6 Missense_Mutation p.V596A 0.69 tolerated(0.44) benign(0.013) TCGA-FR-A726-01 X 110494883 110494883 G A CAPN6 Missense_Mutation p.R263C 0.71 deleterious(0) probably_damaging(0.965) TCGA-FR-A726-01 X 110653482 110653482 C T DCX Missense_Mutation p.E130K 0.66 deleterious(0.01) possibly_damaging(0.494) TCGA-FR-A726-01 X 11157221 11157221 C T ARHGAP6 Nonsense_Mutation p.W896* 0.79 TCGA-FR-A726-01 X 11316808 11316808 C T AMELX Silent p.I109I 0.32 TCGA-FR-A726-01 X 113961301 113961301 C T HTR2C 5'UTR 0.80 TCGA-FR-A726-01 X 114141243 114141243 C T HTR2C Silent p.F214F 0.70 TCGA-FR-A726-01 X 114422903 114422903 G A LRCH2 Missense_Mutation p.P127L 0.70 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 X 115303947 115303947 G A AGTR2 Missense_Mutation p.M138I 0.72 deleterious(0.01) probably_damaging(0.978) TCGA-FR-A726-01 X 115304344 115304344 C T AGTR2 Missense_Mutation p.P271S 0.67 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 X 11682608 11682608 G A ARHGAP6 Missense_Mutation p.P114L 0.11 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-FR-A726-01 X 117032802 117032802 G A KLHL13 3'UTR 0.17 TCGA-FR-A726-01 X 117053616 117053616 C T KLHL13 Silent p.R149R 0.70 TCGA-FR-A726-01 X 117817154 117817154 G A DOCK11 Missense_Mutation p.E2026K 0.74 deleterious(0.05) probably_damaging(0.998) TCGA-FR-A726-01 X 117819679 117819679 C T DOCK11 Missense_Mutation p.P2044L 0.70 tolerated(0.08) benign(0.055) TCGA-FR-A726-01 X 117892041 117892041 A G IL13RA1 Missense_Mutation p.H171R 0.09 tolerated(0.61) benign(0.003) TCGA-FR-A726-01 X 118151659 118151659 G A LONRF3 3'UTR 0.68 TCGA-FR-A726-01 X 118221181 118221181 C T KIAA1210 Missense_Mutation p.D1338N 0.08 tolerated(0.15) probably_damaging(0.943) TCGA-FR-A726-01 X 118979168 118979168 G A UPF3B Silent p.I154I 0.18 TCGA-FR-A726-01 X 119293178 119293178 G A RHOXF2 Missense_Mutation p.E113K 0.43 deleterious(0.03) probably_damaging(0.98) TCGA-FR-A726-01 X 119410875 119410875 G A TMEM255A Silent p.Y204Y 0.75 TCGA-FR-A726-01 X 119500416 119500416 G A ATP1B4 Missense_Mutation p.D34N 0.73 tolerated_low_confidence(0.21) probably_damaging(0.996) TCGA-FR-A726-01 X 120009255 120009255 C T CT47B1 Silent p.A90A 0.19 TCGA-FR-A726-01 X 120094341 120094341 C T CT47A6 Missense_Mutation p.E248K 0.73 deleterious(0.04) possibly_damaging(0.486) TCGA-FR-A726-01 X 123514883 123514883 C T TENM1 Missense_Mutation p.E2568K 0.61 tolerated(0.13) possibly_damaging(0.684) TCGA-FR-A726-01 X 123517545 123517545 G A TENM1 Silent p.L2412L 0.07 TCGA-FR-A726-01 X 123517879 123517879 A T TENM1 Missense_Mutation p.L2301Q 0.66 deleterious(0) probably_damaging(0.989) TCGA-FR-A726-01 X 123775740 123775740 G A TENM1 Missense_Mutation p.P660S 0.71 tolerated(0.67) benign(0.005) TCGA-FR-A726-01 X 123787487 123787487 C T TENM1 Missense_Mutation p.D439N 0.71 tolerated(0.29) benign(0.247) TCGA-FR-A726-01 X 124029895 124029895 C T TENM1 Missense_Mutation p.S138N 0.65 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-FR-A726-01 X 124029998 124029998 C T TENM1 Missense_Mutation p.G104R 0.62 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-FR-A726-01 X 125298567 125298567 C T DCAF12L2 Silent p.G447G 0.66 TCGA-FR-A726-01 X 125299857 125299857 C T DCAF12L2 Silent p.E17E 0.73 TCGA-FR-A726-01 X 125686001 125686001 G A DCAF12L1 Silent p.I197I 0.10 TCGA-FR-A726-01 X 127185237 127185237 C T ACTRT1 Missense_Mutation p.E317K 0.09 deleterious(0) possibly_damaging(0.874) TCGA-FR-A726-01 X 127185837 127185837 C T ACTRT1 Missense_Mutation p.E117K 0.68 tolerated(0.35) benign(0.009) TCGA-FR-A726-01 X 128624036 128624036 C T SMARCA1 Splice_Site p.X650_splice 0.65 TCGA-FR-A726-01 X 128692637 128692637 C T OCRL Missense_Mutation p.S156F 0.08 deleterious(0.01) benign(0.429) TCGA-FR-A726-01 X 128901613 128901613 C T XPNPEP2 Missense_Mutation p.S592L 0.68 deleterious(0) benign(0.341) TCGA-FR-A726-01 X 128946727 128946727 G A ZDHHC9 Silent p.F248F 0.16 TCGA-FR-A726-01 X 129147563 129147563 C T BCORL1 Missense_Mutation p.S272L 0.65 unknown(0) TCGA-FR-A726-01 X 129203580 129203580 G A ELF4 Silent p.P294P 0.52 TCGA-FR-A726-01 X 12938305 12938305 C T TLR8 Silent p.L382L 0.32 TCGA-FR-A726-01 X 129474327 129474327 A C SLC25A14 Silent p.G25G 0.78 TCGA-FR-A726-01 X 130408672 130408672 C T IGSF1 Missense_Mutation p.G1223R 0.06 tolerated(0.15) probably_damaging(1) TCGA-FR-A726-01 X 130408784 130408784 G A IGSF1 Silent p.T1185T 0.74 TCGA-FR-A726-01 X 130411920 130411920 C T IGSF1 Missense_Mutation p.D749N 0.68 tolerated(0.33) benign(0.007) TCGA-FR-A726-01 X 130415911 130415911 G A IGSF1 Silent p.P418P 0.08 TCGA-FR-A726-01 X 130423304 130423304 C T IGSF1 5'UTR 0.68 TCGA-FR-A726-01 X 130678906 130678906 C T OR13H1 Silent p.L287L 0.62 TCGA-FR-A726-01 X 1317552 1317552 G A CRLF2 Silent p.T171T 0.60 TCGA-FR-A726-01 X 132351982 132351982 C T TFDP3 Silent p.R102R 0.62 TCGA-FR-A726-01 X 133906090 133906090 G A FAM122B 3'UTR 0.75 TCGA-FR-A726-01 X 134303675 134303675 C T CT55 Missense_Mutation p.G41E 0.65 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 X 134303676 134303676 C T CT55 Missense_Mutation p.G41R 0.65 deleterious(0) probably_damaging(0.997) TCGA-FR-A726-01 X 135426623 135426623 C T GPR112 Missense_Mutation p.S253F 0.65 tolerated(0.09) possibly_damaging(0.733) TCGA-FR-A726-01 X 135427266 135427266 C T GPR112 Silent p.F467F 0.66 TCGA-FR-A726-01 X 135427267 135427267 C T GPR112 Missense_Mutation p.P468S 0.66 deleterious(0.02) benign(0.335) TCGA-FR-A726-01 X 135427512 135427512 G A GPR112 Silent p.S549S 0.69 TCGA-FR-A726-01 X 135429662 135429662 G A GPR112 Missense_Mutation p.G1266E 0.76 tolerated(0.19) benign(0.177) TCGA-FR-A726-01 X 135431720 135431720 C T GPR112 Missense_Mutation p.S1952F 0.61 deleterious(0.04) benign(0.177) TCGA-FR-A726-01 X 135572467 135572467 A T BRS3 Missense_Mutation p.T204S 0.67 tolerated(0.36) benign(0.078) TCGA-FR-A726-01 X 135958667 135958667 C T RBMX Missense_Mutation p.G179E 0.64 deleterious(0.01) probably_damaging(1) TCGA-FR-A726-01 X 138633251 138633251 C T F9 Missense_Mutation p.S184L 0.71 tolerated(0.2) benign(0.003) TCGA-FR-A726-01 X 138671994 138671994 C G MCF2 Missense_Mutation p.Q866H 0.48 deleterious(0) possibly_damaging(0.627) TCGA-FR-A726-01 X 138701863 138701863 A G MCF2 Silent p.L290L 0.52 TCGA-FR-A726-01 X 140270676 140270676 G A LDOC1 3'UTR 1.00 TCGA-FR-A726-01 X 140335801 140335801 G A SPANXC Missense_Mutation p.S48L 0.18 tolerated(0.53) possibly_damaging(0.858) TCGA-FR-A726-01 X 140985116 140985116 C T MAGEC3 Silent p.F524F 0.20 TCGA-FR-A726-01 X 140994720 140994720 C T MAGEC1 Silent p.P510P 0.62 TCGA-FR-A726-01 X 140994883 140994883 C T MAGEC1 Missense_Mutation p.P565S 0.66 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-FR-A726-01 X 140994903 140994903 G A MAGEC1 Silent p.G571G 0.46 TCGA-FR-A726-01 X 140995322 140995322 C T MAGEC1 Missense_Mutation p.P711L 0.69 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-FR-A726-01 X 140996081 140996081 C T MAGEC1 Missense_Mutation p.S964F 0.72 deleterious(0) unknown(0) TCGA-FR-A726-01 X 140996554 140996554 G A MAGEC1 Missense_Mutation p.D1122N 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A726-01 X 141291169 141291169 G A MAGEC2 Missense_Mutation p.P202L 0.73 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 X 142718417 142718417 G A SLITRK4 Missense_Mutation p.L170F 0.66 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 X 142795189 142795189 C T SPANXN2 Silent p.E163E 0.69 TCGA-FR-A726-01 X 144329107 144329107 A T SPANXN1 Translation_Start_Site p.M1? 0.67 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-FR-A726-01 X 144337224 144337224 G A SPANXN1 Missense_Mutation p.E37K 0.64 tolerated(0.18) benign(0.022) TCGA-FR-A726-01 X 144337355 144337355 C T SPANXN1 3'UTR 0.60 TCGA-FR-A726-01 X 14748392 14748392 C T GLRA2 Nonsense_Mutation p.Q382* 0.83 TCGA-FR-A726-01 X 148048474 148048474 T A AFF2 Missense_Mutation p.I1023N 0.79 tolerated(0.49) probably_damaging(0.998) TCGA-FR-A726-01 X 148664884 148664884 G A MAGEA9B 5'UTR 0.30 TCGA-FR-A726-01 X 149767114 149767114 C T MTM1 Silent p.I65I 0.70 TCGA-FR-A726-01 X 149945871 149945871 T C CD99L2 Intron 0.65 TCGA-FR-A726-01 X 150832600 150832600 T A PASD1 Nonsense_Mutation p.L284* 0.15 TCGA-FR-A726-01 X 150841133 150841133 G A PASD1 Missense_Mutation p.S639N 0.72 tolerated(0.3) benign(0.001) TCGA-FR-A726-01 X 150869094 150869094 C T PRRG3 Silent p.I95I 0.06 TCGA-FR-A726-01 X 150908034 150908034 G A CNGA2 Silent p.R68R 0.84 TCGA-FR-A726-01 X 151303337 151303337 C T MAGEA10 Missense_Mutation p.M252I 0.74 tolerated(0.55) benign(0.122) TCGA-FR-A726-01 X 151303974 151303974 G A MAGEA10 Missense_Mutation p.S40L 0.70 deleterious(0.02) benign(0.036) TCGA-FR-A726-01 X 152226197 152226197 A T PNMA3 Missense_Mutation p.E262V 0.46 deleterious(0) probably_damaging(0.998) TCGA-FR-A726-01 X 152807906 152807906 G A ATP2B3 Missense_Mutation p.G264S 0.55 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 X 152815719 152815719 G A ATP2B3 Missense_Mutation p.G600R 0.11 deleterious(0) probably_damaging(0.986) TCGA-FR-A726-01 X 15301702 15301702 G A ASB11 Silent p.L299L 0.82 TCGA-FR-A726-01 X 153134975 153134975 G C L1CAM Missense_Mutation p.Q423E 0.76 tolerated(1) benign(0.003) TCGA-FR-A726-01 X 153224141 153224141 G A HCFC1 Missense_Mutation p.P561L 0.67 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 X 153225561 153225561 G A HCFC1 Missense_Mutation p.S379F 0.63 deleterious(0) probably_damaging(0.987) TCGA-FR-A726-01 X 153296129 153296129 G A MECP2 Missense_Mutation p.P396S 0.17 tolerated_low_confidence(0.28) unknown(0) TCGA-FR-A726-01 X 153421783 153421783 G A OPN1LW Silent p.Q253Q 0.69 TCGA-FR-A726-01 X 153537696 153537696 G A TKTL1 Splice_Site p.X85_splice 0.73 TCGA-FR-A726-01 X 153588567 153588567 G A FLNA Missense_Mutation p.S1199L 0.45 tolerated(0.06) benign(0.142) TCGA-FR-A726-01 X 153692789 153692789 G A PLXNA3 Missense_Mutation p.G625S 0.40 tolerated(0.08) possibly_damaging(0.458) TCGA-FR-A726-01 X 154091357 154091369 CTATTTAAATCAC - F8 Splice_Site p.X2188_splice 0.62 TCGA-FR-A726-01 X 154159336 154159336 G A F8 Missense_Mutation p.S910L 0.75 tolerated(0.11) possibly_damaging(0.703) TCGA-FR-A726-01 X 1584386 1584386 C T P2RY8 Missense_Mutation p.E356K 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.656) TCGA-FR-A726-01 X 16168694 16168694 C T GRPR Missense_Mutation p.S227F 0.75 deleterious(0) probably_damaging(0.99) TCGA-FR-A726-01 X 17157007 17157007 C T REPS2 Nonsense_Mutation p.Q613* 0.90 TCGA-FR-A726-01 X 1743174 1743174 A T ASMT Missense_Mutation p.N86I 0.63 deleterious(0) probably_damaging(0.988) TCGA-FR-A726-01 X 17819692 17819692 A T RAI2 Missense_Mutation p.S147T 0.31 tolerated(0.1) probably_damaging(0.943) TCGA-FR-A726-01 X 18264805 18264805 C T SCML2 Missense_Mutation p.D572N 0.82 tolerated(0.6) benign(0.001) TCGA-FR-A726-01 X 18348721 18348721 G A SCML2 Missense_Mutation p.S26F 0.73 tolerated(0.07) benign(0.007) TCGA-FR-A726-01 X 18622593 18622593 T C CDKL5 Missense_Mutation p.F517L 0.30 deleterious_low_confidence(0) benign(0.153) TCGA-FR-A726-01 X 19027768 19027768 C T GPR64 Silent p.V466V 0.22 TCGA-FR-A726-01 X 19560223 19560223 G A SH3KBP1 Missense_Mutation p.P571L 0.87 deleterious(0.04) benign(0.406) TCGA-FR-A726-01 X 21675040 21675040 C T KLHL34 Silent p.R289R 0.73 TCGA-FR-A726-01 X 23411477 23411477 G A PTCHD1 Silent p.R614R 0.69 TCGA-FR-A726-01 X 26157494 26157494 G A MAGEB18 Missense_Mutation p.G131E 0.38 tolerated(0.33) benign(0.01) TCGA-FR-A726-01 X 26157519 26157519 G A MAGEB18 Silent p.R139R 0.56 TCGA-FR-A726-01 X 26212733 26212733 C T MAGEB6 Missense_Mutation p.S257F 0.63 deleterious(0) probably_damaging(0.939) TCGA-FR-A726-01 X 26212784 26212784 G A MAGEB6 Missense_Mutation p.G274E 0.64 tolerated(0.2) probably_damaging(0.999) TCGA-FR-A726-01 X 27998526 27998526 G A DCAF8L1 Missense_Mutation p.A309V 0.69 deleterious(0.03) possibly_damaging(0.76) TCGA-FR-A726-01 X 29301305 29301305 G A IL1RAPL1 Silent p.Q111Q 0.62 TCGA-FR-A726-01 X 2945399 2945399 G A ARSH Missense_Mutation p.G361E 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 X 29973843 29973843 C T IL1RAPL1 Missense_Mutation p.S666L 0.36 tolerated_low_confidence(0.11) benign(0.015) TCGA-FR-A726-01 X 3002489 3002489 C T ARSF Silent p.T204T 0.33 TCGA-FR-A726-01 X 30578057 30578057 G A CXorf21 Missense_Mutation p.S139L 0.66 tolerated(0.09) benign(0.081) TCGA-FR-A726-01 X 31089939 31089939 C T FTHL17 Silent p.R44R 0.62 TCGA-FR-A726-01 X 31196868 31196868 G A DMD Nonsense_Mutation p.R3381* 0.58 TCGA-FR-A726-01 X 31497159 31497159 C T DMD Missense_Mutation p.R2870Q 0.51 benign(0.417) TCGA-FR-A726-01 X 3228576 3228576 C T MXRA5 Silent p.A2556A 0.81 TCGA-FR-A726-01 X 3228717 3228717 C T MXRA5 Silent p.R2509R 0.82 TCGA-FR-A726-01 X 3235656 3235656 G A MXRA5 Silent p.V2022V 0.31 TCGA-FR-A726-01 X 3238423 3238423 G A MXRA5 Missense_Mutation p.S1768F 0.82 tolerated(0.11) benign(0.002) TCGA-FR-A726-01 X 3239628 3239628 C T MXRA5 Silent p.K1366K 0.30 TCGA-FR-A726-01 X 3242419 3242419 G A MXRA5 Missense_Mutation p.S436F 0.84 tolerated(0.72) benign(0.208) TCGA-FR-A726-01 X 3242868 3242868 C T MXRA5 Silent p.Q286Q 0.82 TCGA-FR-A726-01 X 3248289 3248289 C T MXRA5 Missense_Mutation p.G160E 0.93 deleterious(0) probably_damaging(0.996) TCGA-FR-A726-01 X 34148044 34148044 G A FAM47A Silent p.I784I 0.58 TCGA-FR-A726-01 X 34148786 34148786 G A FAM47A Missense_Mutation p.T537I 0.72 deleterious(0.05) possibly_damaging(0.702) TCGA-FR-A726-01 X 34961414 34961414 G A FAM47B Missense_Mutation p.E156K 0.73 tolerated(0.06) probably_damaging(0.996) TCGA-FR-A726-01 X 35938099 35938099 G A CXorf22 Silent p.P61P 0.12 TCGA-FR-A726-01 X 36103431 36103431 G A CHDC2 Silent p.R139R 0.65 TCGA-FR-A726-01 X 37028981 37028981 C T FAM47C Missense_Mutation p.S833L 0.73 deleterious(0.03) benign(0.012) TCGA-FR-A726-01 X 37587379 37587379 C T XK Silent p.L333L 0.70 TCGA-FR-A726-01 X 37850173 37850173 C T CXorf27 Silent p.V27V 0.65 TCGA-FR-A726-01 X 37893197 37893197 G A SYTL5 Missense_Mutation p.E19K 0.76 tolerated(0.07) benign(0.033) TCGA-FR-A726-01 X 38260559 38260559 G A OTC Missense_Mutation p.A140T 0.61 deleterious(0) probably_damaging(0.955) TCGA-FR-A726-01 X 40539330 40539330 G A MED14 Missense_Mutation p.P889L 0.41 tolerated(0.09) benign(0.259) TCGA-FR-A726-01 X 40539331 40539331 G A MED14 Missense_Mutation p.P889S 0.40 deleterious(0.02) possibly_damaging(0.78) TCGA-FR-A726-01 X 41524613 41524613 G A CASK Missense_Mutation p.L209F 0.14 tolerated(0.09) probably_damaging(0.998) TCGA-FR-A726-01 X 43590569 43590569 C T MAOA Missense_Mutation p.P243S 0.57 deleterious(0.03) possibly_damaging(0.887) TCGA-FR-A726-01 X 43817929 43817929 G A NDP 5'UTR 0.70 TCGA-FR-A726-01 X 45051114 45051114 C T CXorf36 Missense_Mutation p.R127K 0.67 tolerated(0.53) benign(0.003) TCGA-FR-A726-01 X 47307956 47307956 G A ZNF41 Missense_Mutation p.H405Y 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-FR-A726-01 X 48209460 48209460 C T SSX3 Missense_Mutation p.G143E 0.67 tolerated(0.12) possibly_damaging(0.901) TCGA-FR-A726-01 X 48214667 48214667 G A SSX3 Silent p.T6T 0.65 TCGA-FR-A726-01 X 48319109 48319109 C T SLC38A5 Missense_Mutation p.D332N 0.72 deleterious(0) probably_damaging(0.969) TCGA-FR-A726-01 X 48320450 48320450 G A SLC38A5 Silent p.L238L 0.68 TCGA-FR-A726-01 X 48419000 48419000 C T TBC1D25 Silent p.T568T 0.65 TCGA-FR-A726-01 X 48458800 48458800 C T WDR13 Missense_Mutation p.P206L 0.68 deleterious(0) probably_damaging(0.985) TCGA-FR-A726-01 X 48544004 48544004 C T WAS Silent p.F114F 0.80 TCGA-FR-A726-01 X 48755850 48755850 C T PQBP1 Silent p.L20L 0.59 TCGA-FR-A726-01 X 48792283 48792283 C T OTUD5 Missense_Mutation p.V233M 0.54 deleterious(0) probably_damaging(0.977) TCGA-FR-A726-01 X 48888941 48888941 C T TFE3 Missense_Mutation p.A419T 0.77 tolerated(0.22) benign(0) TCGA-FR-A726-01 X 49072946 49072946 G A CACNA1F Silent p.P1055P 0.79 TCGA-FR-A726-01 X 49113902 49113902 G A FOXP3 Missense_Mutation p.R146W 0.65 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 X 49958587 49958587 C T AKAP4 Silent p.E259E 0.19 TCGA-FR-A726-01 X 50053736 50053736 T A CCNB3 Missense_Mutation p.F856Y 0.30 deleterious(0.04) possibly_damaging(0.483) TCGA-FR-A726-01 X 50113510 50113510 C T DGKK RNA 0.56 TCGA-FR-A726-01 X 50213519 50213519 G A DGKK RNA 0.63 TCGA-FR-A726-01 X 50350796 50350796 G A SHROOM4 Missense_Mutation p.R1116C 0.47 deleterious(0) possibly_damaging(0.704) TCGA-FR-A726-01 X 50659347 50659347 C T BMP15 Missense_Mutation p.H307Y 0.61 deleterious(0) probably_damaging(0.979) TCGA-FR-A726-01 X 51234581 51234581 C T NUDT11 3'UTR 0.67 TCGA-FR-A726-01 X 51640092 51640092 C T MAGED1 Silent p.N503N 0.56 TCGA-FR-A726-01 X 52681305 52681305 G A SSX7 Nonsense_Mutation p.Q93* 0.60 TCGA-FR-A726-01 X 53113997 53113997 C T TSPYL2 Missense_Mutation p.P316S 0.82 deleterious(0.03) probably_damaging(1) TCGA-FR-A726-01 X 54185980 54185980 G A FAM120C Missense_Mutation p.L257F 0.62 deleterious(0) probably_damaging(0.999) TCGA-FR-A726-01 X 54783710 54783710 G A ITIH6 Missense_Mutation p.P933S 0.47 tolerated(0.18) benign(0.037) TCGA-FR-A726-01 X 54949024 54949024 C T TRO Missense_Mutation p.P20L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-FR-A726-01 X 55033193 55033193 C T APEX2 Silent p.F294F 0.74 TCGA-FR-A726-01 X 55033194 55033194 C T APEX2 Silent p.L295L 0.75 TCGA-FR-A726-01 X 55054291 55054291 C A ALAS2 Intron 0.44 TCGA-FR-A726-01 X 55650403 55650403 C T FOXR2 Silent p.L87L 0.69 TCGA-FR-A726-01 X 57313413 57313413 C T FAAH2 Missense_Mutation p.S52L 0.94 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A726-01 X 57515197 57515197 C T FAAH2 Silent p.F477F 0.72 TCGA-FR-A726-01 X 5810795 5810795 C T NLGN4X 3'UTR 0.90 TCGA-FR-A726-01 X 5821806 5821806 C T NLGN4X Missense_Mutation p.G305S 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A726-01 X 591739 591739 G A SHOX Missense_Mutation p.R36Q 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.463) TCGA-FR-A726-01 X 591789 591789 G A SHOX Missense_Mutation p.D53N 0.69 tolerated_low_confidence(0.12) benign(0.046) TCGA-FR-A726-01 X 6069208 6069208 G A NLGN4X Silent p.I100I 0.78 TCGA-FR-A726-01 X 6069332 6069332 C T NLGN4X Missense_Mutation p.R59K 0.82 tolerated(0.51) benign(0.001) TCGA-FR-A726-01 X 63551507 63551507 G A MTMR8 Missense_Mutation p.H428Y 0.61 deleterious(0.04) possibly_damaging(0.632) TCGA-FR-A726-01 X 64139896 64139896 G A ZC4H2 Intron 0.71 TCGA-FR-A726-01 X 64139923 64139923 G A ZC4H2 Intron 0.76 TCGA-FR-A726-01 X 66931395 66931395 A G AR Silent p.E679E 0.75 TCGA-FR-A726-01 X 66941716 66941716 G A AR Missense_Mutation p.R787Q 0.73 tolerated(0.11) probably_damaging(0.984) TCGA-FR-A726-01 X 67937299 67937299 G A STARD8 Silent p.S181S 0.55 TCGA-FR-A726-01 X 68383162 68383162 G A PJA1 5'UTR 0.67 TCGA-FR-A726-01 X 69282986 69282986 G A OTUD6A Missense_Mutation p.M204I 0.72 tolerated(0.2) benign(0.026) TCGA-FR-A726-01 X 69283045 69283045 C T OTUD6A Missense_Mutation p.A224V 0.76 tolerated(0.15) probably_damaging(0.999) TCGA-FR-A726-01 X 69424308 69424308 G A DGAT2L6 Silent p.R267R 0.71 TCGA-FR-A726-01 X 69424922 69424922 G A DGAT2L6 Missense_Mutation p.G327D 0.18 deleterious(0.01) possibly_damaging(0.585) TCGA-FR-A726-01 X 69670617 69670617 C T DLG3 Silent p.P323P 0.47 TCGA-FR-A726-01 X 69773225 69773225 G A TEX11 Missense_Mutation p.A792V 0.48 deleterious(0.03) probably_damaging(0.981) TCGA-FR-A726-01 X 70280920 70280920 G A SNX12 Silent p.F145F 0.63 TCGA-FR-A726-01 X 70321112 70321112 C T FOXO4 Silent p.S344S 0.46 TCGA-FR-A726-01 X 70384117 70384117 C T NLGN3 Silent p.V284V 0.16 TCGA-FR-A726-01 X 70389240 70389240 G A NLGN3 Missense_Mutation p.D614N 0.62 tolerated(0.05) probably_damaging(0.917) TCGA-FR-A726-01 X 70825531 70825531 C T ACRC Missense_Mutation p.P473L 0.45 unknown(0) TCGA-FR-A726-01 X 71359895 71359895 C T NHSL2 Silent p.L833L 0.52 TCGA-FR-A726-01 X 72299273 72299273 C T PABPC1L2A 5'UTR 0.53 TCGA-FR-A726-01 X 73043377 73043377 G A XIST RNA 0.65 TCGA-FR-A726-01 X 73045901 73045901 C T XIST RNA 0.51 TCGA-FR-A726-01 X 73744353 73744353 C T SLC16A2 Silent p.S245S 0.74 TCGA-FR-A726-01 X 73960771 73960771 C T KIAA2022 Silent p.G1207G 0.62 TCGA-FR-A726-01 X 73962572 73962572 G A KIAA2022 Missense_Mutation p.S607F 0.62 tolerated(0.66) benign(0.001) TCGA-FR-A726-01 X 75004711 75004711 G A MAGEE2 Missense_Mutation p.S59F 0.11 tolerated(0.11) benign(0.001) TCGA-FR-A726-01 X 76938592 76938592 G A ATRX Missense_Mutation p.S719F 0.14 possibly_damaging(0.794) TCGA-FR-A726-01 X 77528457 77528457 C T CYSLTR1 Missense_Mutation p.E263K 0.69 tolerated(0.92) benign(0.005) TCGA-FR-A726-01 X 77912693 77912693 C T ZCCHC5 Missense_Mutation p.G409R 0.65 tolerated(1) benign(0.001) TCGA-FR-A726-01 X 77912694 77912694 C T ZCCHC5 Silent p.E408E 0.64 TCGA-FR-A726-01 X 78010978 78010978 C T LPAR4 Silent p.I204I 0.66 TCGA-FR-A726-01 X 7811746 7811746 C T VCX Silent p.L104L 0.21 TCGA-FR-A726-01 X 79698375 79698375 C T FAM46D Missense_Mutation p.P113S 0.70 deleterious(0) probably_damaging(1) TCGA-FR-A726-01 X 82763776 82763776 G A POU3F4 Silent p.G148G 0.72 TCGA-FR-A726-01 X 83360845 83360845 C T RPS6KA6 Missense_Mutation p.E469K 0.69 deleterious(0.01) benign(0.346) TCGA-FR-A726-01 X 83403114 83403114 C T RPS6KA6 Silent p.K92K 0.69 TCGA-FR-A726-01 X 84525120 84525120 G A ZNF711 Missense_Mutation p.R359K 0.52 tolerated(1) benign(0.083) TCGA-FR-A726-01 X 84614615 84614615 C T POF1B Silent p.V126V 0.72 TCGA-FR-A726-01 X 86087153 86087153 G A DACH2 Missense_Mutation p.A599T 0.64 deleterious_low_confidence(0.01) benign(0.025) TCGA-FR-A726-01 X 86887355 86887355 G A KLHL4 Silent p.L490L 0.22 TCGA-FR-A726-01 X 88009185 88009185 T C CPXCR1 Missense_Mutation p.L257S 0.62 tolerated(0.05) benign(0.001) TCGA-FR-A726-01 X 89177088 89177088 G A TGIF2LX Missense_Mutation p.E2K 0.65 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-FR-A726-01 X 8996009 8996009 T C FAM9B Splice_Site p.X132_splice 0.34 TCGA-FR-A726-01 X 91090506 91090506 G A PCDH11X Translation_Start_Site p.M1? 0.65 deleterious(0) probably_damaging(0.968) TCGA-FR-A726-01 X 91132670 91132670 G A PCDH11X Silent p.E477E 0.56 TCGA-FR-A726-01 X 91134158 91134158 G C PCDH11X Silent p.V973V 0.10 TCGA-FR-A726-01 X 92927759 92927759 G A NAP1L3 Missense_Mutation p.P182L 0.13 tolerated(0.23) benign(0) TCGA-FR-A726-01 X 96185815 96185815 C T DIAPH2 Silent p.L354L 0.64 TCGA-FR-A726-01 X 99661616 99661616 G A PCDH19 Silent p.I660I 0.80 TCGA-FR-A726-01 X 99922318 99922318 C T SRPX2 Nonsense_Mutation p.Q337* 0.75 TCGA-FR-A726-01 X 99957000 99957000 C T SYTL4 Missense_Mutation p.E12K 0.66 deleterious(0.03) unknown(0) TCGA-FR-A726-01 Y 16942193 16942193 C T NLGN4Y Silent p.S465S 0.13 TCGA-FR-A726-01 Y 2829248 2829248 C T ZFY Silent p.I65I 0.15 TCGA-FR-A726-01 Y 3447680 3447680 C T TGIF2LY Missense_Mutation p.A132V 0.28 tolerated(0.41) benign(0.031) TCGA-FR-A726-01 Y 4967787 4967787 C T PCDH11Y Missense_Mutation p.P723L 0.59 tolerated(0.22) probably_damaging(0.925) TCGA-FR-A726-01 Y 6114271 6114271 C T TSPY2 5'UTR 0.56 TCGA-FR-A726-01 Y 6939866 6939866 G A TBL1Y Missense_Mutation p.D297N 0.40 deleterious(0) probably_damaging(0.999) TCGA-FR-A728-01 10 102089863 102089863 G A PKD2L1 5'UTR 0.14 TCGA-FR-A728-01 10 102741276 102741276 G A MRPL43 Missense_Mutation p.S227F 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A728-01 10 102743835 102743835 G A SEMA4G Missense_Mutation p.E827K 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-FR-A728-01 10 103542084 103542084 G A NPM3 Nonsense_Mutation p.Q117* 0.15 TCGA-FR-A728-01 10 105953678 105953678 G A WDR96 Missense_Mutation p.S463F 0.15 tolerated(0.25) benign(0.047) TCGA-FR-A728-01 10 115890990 115890990 C T C10orf118 Missense_Mutation p.V673I 0.08 tolerated(0.31) benign(0.025) TCGA-FR-A728-01 10 124399739 124399739 G A DMBT1 Missense_Mutation p.E2247K 0.13 deleterious(0.05) benign(0.03) TCGA-FR-A728-01 10 17271364 17271364 C T VIM 5'UTR 0.36 TCGA-FR-A728-01 10 21074831 21074831 C T NEBL Missense_Mutation p.D964N 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 10 24822029 24822029 C T KIAA1217 Nonsense_Mutation p.Q1093* 0.09 TCGA-FR-A728-01 10 24880169 24880169 G T ARHGAP21 Missense_Mutation p.P1379T 0.28 deleterious(0.03) probably_damaging(0.939) TCGA-FR-A728-01 10 5246449 5246449 C T AKR1C4 Missense_Mutation p.A121V 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-FR-A728-01 10 61830960 61830960 C T ANK3 Missense_Mutation p.A3227T 0.11 benign(0) TCGA-FR-A728-01 10 61832247 61832247 C T ANK3 Missense_Mutation p.E2798K 0.20 benign(0.001) TCGA-FR-A728-01 10 62023696 62023696 C T ANK3 Missense_Mutation p.G199E 0.29 probably_damaging(1) TCGA-FR-A728-01 10 68138923 68138923 G A CTNNA3 Silent p.F573F 0.23 TCGA-FR-A728-01 10 75302774 75302774 A C USP54 Splice_Site p.X163_splice 0.14 TCGA-FR-A728-01 10 75567585 75567585 G A NDST2 Missense_Mutation p.P188S 0.32 deleterious(0.04) probably_damaging(0.986) TCGA-FR-A728-01 10 76854445 76854445 C T DUSP13 Missense_Mutation p.G246R 0.07 tolerated(0.21) benign(0.441) TCGA-FR-A728-01 10 93572898 93572898 C T TNKS2 Nonsense_Mutation p.R120* 0.10 TCGA-FR-A728-01 10 95517808 95517808 G A LGI1 5'UTR 0.12 TCGA-FR-A728-01 10 97759950 97759950 G A CC2D2B 5'UTR 0.16 TCGA-FR-A728-01 10 98080543 98080543 G A DNTT Missense_Mutation p.E226K 0.20 tolerated(0.24) probably_damaging(0.998) TCGA-FR-A728-01 11 108277528 108277528 G A C11orf65 Missense_Mutation p.R131C 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 113075201 113075201 G A NCAM1 Silent p.E166E 0.21 TCGA-FR-A728-01 11 119003919 119003919 C T HINFP Missense_Mutation p.P377S 0.20 tolerated(0.54) benign(0.044) TCGA-FR-A728-01 11 121491912 121491912 A G SORL1 Missense_Mutation p.N2010S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A728-01 11 122735384 122735384 G A CRTAM Silent p.K258K 0.11 TCGA-FR-A728-01 11 123810378 123810378 C T OR4D5 Nonsense_Mutation p.Q19* 0.10 TCGA-FR-A728-01 11 124440417 124440417 C T OR8A1 Silent p.I151I 0.10 TCGA-FR-A728-01 11 124487380 124487380 G A PANX3 Missense_Mutation p.E179K 0.18 tolerated(0.29) benign(0.171) TCGA-FR-A728-01 11 130281390 130281390 G A ADAMTS8 Missense_Mutation p.P558S 0.24 deleterious(0) probably_damaging(0.994) TCGA-FR-A728-01 11 17793586 17793586 C T KCNC1 Silent p.F315F 0.13 TCGA-FR-A728-01 11 379671 379671 C T B4GALNT4 Nonsense_Mutation p.Q820* 0.47 TCGA-FR-A728-01 11 40137653 40137653 G A LRRC4C Missense_Mutation p.R64W 0.52 deleterious(0) probably_damaging(0.983) TCGA-FR-A728-01 11 48267467 48267467 C T OR4X2 Missense_Mutation p.T271I 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 49598230 49598230 G A RP11-707M1.1 RNA 0.26 TCGA-FR-A728-01 11 55681604 55681604 C T OR5W2 Missense_Mutation p.G152E 0.14 deleterious(0) probably_damaging(0.99) TCGA-FR-A728-01 11 55927164 55927164 G A OR8K5 Silent p.S210S 0.14 TCGA-FR-A728-01 11 56086657 56086657 G A OR8K3 Missense_Mutation p.R292Q 0.30 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-FR-A728-01 11 57947899 57947899 G A OR9Q1 3'UTR 0.19 TCGA-FR-A728-01 11 58675931 58675931 G A AP001652.1 3'UTR 0.24 TCGA-FR-A728-01 11 59831748 59831748 G A MS4A3 Missense_Mutation p.G103E 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 6261570 6261570 G A CNGA4 Nonsense_Mutation p.W182* 0.34 TCGA-FR-A728-01 11 64326694 64326694 G A SLC22A11 Missense_Mutation p.G161S 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-FR-A728-01 11 64939446 64939446 G A SPDYC Missense_Mutation p.D78N 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 65003974 65003974 C T SLC22A20 RNA 0.19 TCGA-FR-A728-01 11 65004251 65004251 C T SLC22A20 RNA 0.05 TCGA-FR-A728-01 11 66136114 66136114 G A SLC29A2 Silent p.L148L 0.16 TCGA-FR-A728-01 11 68748361 68748361 G A MRGPRD Missense_Mutation p.S32F 0.14 tolerated(0.57) benign(0.002) TCGA-FR-A728-01 11 73811598 73811598 G A C2CD3 Missense_Mutation p.P902S 0.09 deleterious(0.02) probably_damaging(1) TCGA-FR-A728-01 11 73958131 73958131 T A PPME1 Missense_Mutation p.D324E 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 82984859 82984859 C T CCDC90B Missense_Mutation p.E173K 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 85437509 85437509 T G SYTL2 5'UTR 0.09 TCGA-FR-A728-01 11 94759491 94759491 C T KDM4E Missense_Mutation p.P257L 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 11 95826308 95826308 T G MAML2 Missense_Mutation p.D296A 0.10 benign(0.13) TCGA-FR-A728-01 12 103699889 103699889 G A C12orf42 Missense_Mutation p.S165L 0.15 tolerated(0.14) possibly_damaging(0.451) TCGA-FR-A728-01 12 10603606 10603606 C T KLRC1 Silent p.Q50Q 0.31 TCGA-FR-A728-01 12 112167710 112167710 C T ACAD10 Silent p.P479P 0.21 TCGA-FR-A728-01 12 117907528 117907528 C T KSR2 Missense_Mutation p.E929K 0.17 deleterious(0) benign(0.442) TCGA-FR-A728-01 12 118198820 118198820 G A KSR2 Missense_Mutation p.P328S 0.21 tolerated(0.38) probably_damaging(0.915) TCGA-FR-A728-01 12 119540090 119540090 G A SRRM4 Missense_Mutation p.E61K 0.15 tolerated_low_confidence(0.13) unknown(0) TCGA-FR-A728-01 12 119909939 119909939 C A CCDC60 Nonsense_Mutation p.S104* 0.22 TCGA-FR-A728-01 12 119937943 119937943 G A CCDC60 Silent p.Q206Q 0.20 TCGA-FR-A728-01 12 120875933 120875933 G A COX6A1 Missense_Mutation p.A2T 0.23 deleterious(0) unknown(0) TCGA-FR-A728-01 12 125298763 125298763 G A SCARB1 Silent p.F205F 0.17 TCGA-FR-A728-01 12 130841563 130841563 G A PIWIL1 Missense_Mutation p.R502Q 0.11 tolerated(0.12) possibly_damaging(0.775) TCGA-FR-A728-01 12 20807112 20807112 G A PDE3A Missense_Mutation p.E1053K 0.18 tolerated(0.09) benign(0.003) TCGA-FR-A728-01 12 344320 344320 G A SLC6A13 Missense_Mutation p.P256L 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 12 48107108 48107108 G A ENDOU Missense_Mutation p.S272L 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A728-01 12 50188870 50188870 T C NCKAP5L Missense_Mutation p.K925E 0.11 deleterious(0) probably_damaging(0.948) TCGA-FR-A728-01 12 50575716 50575716 G A LIMA1 Silent p.F416F 0.28 TCGA-FR-A728-01 12 52760996 52760996 C T KRT85 Missense_Mutation p.R65Q 0.27 tolerated(0.07) benign(0.049) TCGA-FR-A728-01 12 54925599 54925599 G A NCKAP1L Missense_Mutation p.G924E 0.24 deleterious(0) possibly_damaging(0.83) TCGA-FR-A728-01 12 54966411 54966411 C T PDE1B Silent p.F207F 0.14 TCGA-FR-A728-01 12 58145436 58145436 T A CDK4 Missense_Mutation p.K22M 0.25 deleterious(0) probably_damaging(0.997) TCGA-FR-A728-01 12 71148298 71148298 T G PTPRR Intron 0.24 TCGA-FR-A728-01 12 71526475 71526475 C T TSPAN8 Missense_Mutation p.E192K 0.23 tolerated(0.62) benign(0.015) TCGA-FR-A728-01 12 7520791 7520791 G A CD163L1 Missense_Mutation p.H1359Y 0.33 tolerated(0.17) possibly_damaging(0.696) TCGA-FR-A728-01 12 7640159 7640159 C T CD163 Missense_Mutation p.D616N 0.31 tolerated(1) probably_damaging(0.98) TCGA-FR-A728-01 12 80014879 80014879 G A PAWR Missense_Mutation p.P209S 0.21 deleterious(0.02) benign(0.359) TCGA-FR-A728-01 12 86276329 86276329 C T NTS 3'UTR 0.28 TCGA-FR-A728-01 13 32812097 32812097 C T FRY Missense_Mutation p.S2131F 0.22 deleterious(0.01) benign(0.218) TCGA-FR-A728-01 13 46357638 46357638 C T SIAH3 Silent p.T230T 0.15 TCGA-FR-A728-01 13 52602905 52602905 C T UTP14C 5'UTR 0.23 TCGA-FR-A728-01 13 53282780 53282780 C T LECT1 Missense_Mutation p.R227K 0.23 tolerated(0.51) benign(0.001) TCGA-FR-A728-01 14 102516190 102516190 C T DYNC1H1 Missense_Mutation p.T4552I 0.18 benign(0.005) TCGA-FR-A728-01 14 106208522 106208522 G A IGHG1 Silent p.F126F 0.14 TCGA-FR-A728-01 14 106725652 106725652 C T IGHV3-23 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0.01) benign(0.246) TCGA-FR-A728-01 14 19377838 19377838 C T OR11H12 Missense_Mutation p.S82F 0.14 deleterious(0) probably_damaging(0.992) TCGA-FR-A728-01 14 20249324 20249324 C T OR4M1 Silent p.F281F 0.12 TCGA-FR-A728-01 14 20249325 20249325 C T OR4M1 Missense_Mutation p.P282S 0.11 deleterious(0.01) probably_damaging(1) TCGA-FR-A728-01 14 20295957 20295957 T G OR4N2 Missense_Mutation p.V117G 0.18 tolerated(0.08) benign(0.011) TCGA-FR-A728-01 14 20692607 20692607 C T OR11H6 Missense_Mutation p.P247S 0.16 deleterious(0.03) benign(0.438) TCGA-FR-A728-01 14 38724158 38724158 G A CLEC14A Missense_Mutation p.T357I 0.27 tolerated_low_confidence(0.06) benign(0.037) TCGA-FR-A728-01 14 52520986 52520986 G A NID2 Missense_Mutation p.S274F 0.07 tolerated(0.72) benign(0.003) TCGA-FR-A728-01 14 55907242 55907242 C T TBPL2 Missense_Mutation p.E8K 0.10 tolerated_low_confidence(0.06) benign(0.292) TCGA-FR-A728-01 14 70527651 70527651 G A SLC8A3 Missense_Mutation p.T597I 0.25 tolerated(0.33) benign(0.05) TCGA-FR-A728-01 14 74425926 74425926 C G COQ6 Missense_Mutation p.P261R 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 14 75136697 75136697 T A AREL1 Missense_Mutation p.T581S 0.20 tolerated(0.51) probably_damaging(0.992) TCGA-FR-A728-01 14 89172689 89172689 G A EML5 Missense_Mutation p.S580F 0.07 deleterious(0) probably_damaging(0.952) TCGA-FR-A728-01 14 94780811 94780811 G A SERPINA6 Missense_Mutation p.P59S 0.17 deleterious(0.03) possibly_damaging(0.763) TCGA-FR-A728-01 15 101013162 101013162 C T CERS3 Missense_Mutation p.M235I 0.18 tolerated(0.05) benign(0.134) TCGA-FR-A728-01 15 24923558 24923558 C T NPAP1 Silent p.I848I 0.25 TCGA-FR-A728-01 15 48779557 48779557 C T FBN1 Missense_Mutation p.E1139K 0.24 benign(0.174) TCGA-FR-A728-01 15 57921996 57921996 G A GCOM1 Missense_Mutation p.E208K 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A728-01 15 79059000 79059000 C T ADAMTS7 Missense_Mutation p.D1085N 0.11 tolerated(0.27) benign(0.004) TCGA-FR-A728-01 15 79323746 79323746 A T RASGRF1 Missense_Mutation p.S420T 0.40 deleterious(0) probably_damaging(0.991) TCGA-FR-A728-01 15 83561581 83561581 G A HOMER2 Silent p.I6I 0.21 TCGA-FR-A728-01 15 90321333 90321333 G A MESP2 Missense_Mutation p.G321E 0.27 tolerated_low_confidence(0.82) benign(0.004) TCGA-FR-A728-01 15 91017135 91017135 C T IQGAP1 Missense_Mutation p.S814F 0.18 deleterious(0) possibly_damaging(0.707) TCGA-FR-A728-01 16 2147187 2147187 G A PKD1 Silent p.T3487T 0.40 TCGA-FR-A728-01 16 24226095 24226095 C T PRKCB Silent p.S660S 0.30 TCGA-FR-A728-01 16 26147193 26147193 G A HS3ST4 Missense_Mutation p.R332Q 0.14 tolerated(0.21) probably_damaging(0.987) TCGA-FR-A728-01 16 29994853 29994853 C T TAOK2 Silent p.Y430Y 0.10 TCGA-FR-A728-01 16 30456376 30456376 C T SEPHS2 Missense_Mutation p.G225R 0.13 probably_damaging(0.967) TCGA-FR-A728-01 16 31093005 31093005 G A ZNF646 Nonsense_Mutation p.W1787* 0.13 TCGA-FR-A728-01 16 3658911 3658911 G A SLX4 Missense_Mutation p.H19Y 0.05 tolerated_low_confidence(0.06) benign(0.072) TCGA-FR-A728-01 16 57074624 57074624 G A NLRC5 Missense_Mutation p.R978K 0.09 tolerated(0.41) benign(0.004) TCGA-FR-A728-01 16 72094738 72094738 G A HP Silent p.V390V 0.11 TCGA-FR-A728-01 16 74706258 74706258 C T MLKL 3'UTR 0.25 TCGA-FR-A728-01 16 84256469 84256469 G A KCNG4 Missense_Mutation p.P305L 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 16 88951663 88951663 C T CBFA2T3 Missense_Mutation p.G303E 0.12 deleterious(0.01) benign(0.062) TCGA-FR-A728-01 16 89954070 89954070 C T TCF25 Missense_Mutation p.P187S 0.21 tolerated(0.1) benign(0.298) TCGA-FR-A728-01 17 11554593 11554593 G A DNAH9 Missense_Mutation p.D769N 0.27 possibly_damaging(0.651) TCGA-FR-A728-01 17 11790241 11790241 G A DNAH9 Missense_Mutation p.D3691N 0.15 benign(0.028) TCGA-FR-A728-01 17 18022478 18022478 C T MYO15A Missense_Mutation p.P122S 0.21 probably_damaging(0.99) TCGA-FR-A728-01 17 32647834 32647834 C T CCL8 Missense_Mutation p.R70W 0.11 tolerated(0.06) benign(0) TCGA-FR-A728-01 17 36454564 36454564 G A MRPL45 Silent p.S72S 0.30 TCGA-FR-A728-01 17 3786400 3786400 C T CAMKK1 Missense_Mutation p.R195Q 0.21 tolerated(0.18) probably_damaging(0.961) TCGA-FR-A728-01 17 38812842 38812842 A T KRT222 Missense_Mutation p.S234T 0.23 deleterious(0) probably_damaging(0.985) TCGA-FR-A728-01 17 39675039 39675039 C T KRT15 Missense_Mutation p.G14E 0.20 tolerated(0.14) unknown(0) TCGA-FR-A728-01 17 41245308 41245308 G A BRCA1 Missense_Mutation p.P747L 0.22 tolerated(0.52) benign(0.17) TCGA-FR-A728-01 17 4638442 4638442 G A CXCL16 Silent p.A240A 0.22 TCGA-FR-A728-01 17 48269352 48269352 A C COL1A1 Missense_Mutation p.S673A 0.39 benign(0.203) TCGA-FR-A728-01 17 48918397 48918397 C A WFIKKN2 3'UTR 0.12 TCGA-FR-A728-01 17 56288349 56288349 C T MKS1 Missense_Mutation p.G317E 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A728-01 17 56636876 56636876 C T TEX14 Missense_Mutation p.R1448K 0.16 tolerated(1) benign(0.004) TCGA-FR-A728-01 17 57758393 57758393 G A CLTC Missense_Mutation p.D1014N 0.25 deleterious(0.05) benign(0.026) TCGA-FR-A728-01 17 57955623 57955623 G A TUBD1 Missense_Mutation p.H204Y 0.21 tolerated(0.08) possibly_damaging(0.616) TCGA-FR-A728-01 17 61622572 61622572 G A KCNH6 Missense_Mutation p.E880K 0.30 tolerated_low_confidence(0.89) benign(0.028) TCGA-FR-A728-01 17 64880975 64880975 G A CACNG5 Intron 0.22 TCGA-FR-A728-01 17 6719178 6719178 A G TEKT1 Silent p.L154L 0.21 TCGA-FR-A728-01 17 71233030 71233030 C T C17orf80 Missense_Mutation p.P470L 0.20 deleterious(0) possibly_damaging(0.821) TCGA-FR-A728-01 17 72349651 72349651 C T KIF19 Silent p.L747L 0.16 TCGA-FR-A728-01 17 72916015 72916015 G A USH1G Silent p.L306L 0.25 TCGA-FR-A728-01 17 73498665 73498665 G A CASKIN2 Silent p.T830T 0.29 TCGA-FR-A728-01 17 76089185 76089185 C T TNRC6C Missense_Mutation p.S1378F 0.25 deleterious(0) probably_damaging(0.994) TCGA-FR-A728-01 17 8191953 8191953 G A SLC25A35 3'UTR 0.22 TCGA-FR-A728-01 18 13734498 13734498 C T RNMT Silent p.A151A 0.07 TCGA-FR-A728-01 18 13734499 13734499 C T RNMT Missense_Mutation p.H152Y 0.07 deleterious(0.02) benign(0.424) TCGA-FR-A728-01 18 14850220 14850220 T G ANKRD30B Missense_Mutation p.L1016V 0.33 deleterious(0) probably_damaging(0.953) TCGA-FR-A728-01 18 24496377 24496377 G A CHST9 Missense_Mutation p.P393L 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 18 28712596 28712596 G A DSC1 Missense_Mutation p.P725S 0.25 tolerated(0.05) probably_damaging(1) TCGA-FR-A728-01 18 31325947 31325947 C T ASXL3 Silent p.L2045L 0.16 TCGA-FR-A728-01 18 31538245 31538245 A G NOL4 Silent p.N398N 0.09 TCGA-FR-A728-01 18 48333146 48333146 C T MRO Silent p.R72R 0.27 TCGA-FR-A728-01 18 48604711 48604711 G A SMAD4 Silent p.P511P 0.14 TCGA-FR-A728-01 18 50731709 50731709 C T DCC Missense_Mutation p.T566I 0.29 tolerated(0.21) benign(0.051) TCGA-FR-A728-01 18 55143727 55143727 C T ONECUT2 Silent p.S429S 0.16 TCGA-FR-A728-01 18 55270089 55270089 G A NARS Silent p.S446S 0.27 TCGA-FR-A728-01 18 59483240 59483240 C T RNF152 Missense_Mutation p.E153K 0.17 tolerated(0.36) benign(0.027) TCGA-FR-A728-01 18 61225596 61225596 C T SERPINB12 Silent p.F60F 0.14 TCGA-FR-A728-01 18 61323184 61323184 C T SERPINB3 Missense_Mutation p.D294N 0.23 tolerated(0.17) benign(0.033) TCGA-FR-A728-01 18 66564585 66564585 G A CCDC102B Missense_Mutation p.D395N 0.27 tolerated(0.1) possibly_damaging(0.613) TCGA-FR-A728-01 18 6912103 6912103 C T ARHGAP28 Missense_Mutation p.R555C 0.15 deleterious(0) possibly_damaging(0.762) TCGA-FR-A728-01 18 70417752 70417752 G A NETO1 Silent p.I362I 0.29 TCGA-FR-A728-01 18 73122862 73122862 A G SMIM21 Missense_Mutation p.F88S 0.29 tolerated_low_confidence(0.34) possibly_damaging(0.504) TCGA-FR-A728-01 19 10221046 10221046 T C PPAN Missense_Mutation p.V290A 0.14 deleterious(0.02) benign(0.423) TCGA-FR-A728-01 19 13049453 13049453 C T CALR 5'UTR 0.35 TCGA-FR-A728-01 19 15795689 15795689 G A CYP4F12 Missense_Mutation p.G328R 0.16 deleterious(0.03) benign(0.016) TCGA-FR-A728-01 19 15917939 15917939 C T OR10H1 Silent p.K303K 0.10 TCGA-FR-A728-01 19 16038149 16038149 C T CYP4F11 Missense_Mutation p.G133E 0.26 deleterious(0.01) probably_damaging(1) TCGA-FR-A728-01 19 19135848 19135848 G A SUGP2 Silent p.L437L 0.25 TCGA-FR-A728-01 19 19344610 19344610 C T NCAN Missense_Mutation p.P1011L 0.08 deleterious(0) benign(0.36) TCGA-FR-A728-01 19 2291361 2291361 C G LINGO3 Missense_Mutation p.V139L 0.10 tolerated(0.28) benign(0.108) TCGA-FR-A728-01 19 3653304 3653304 A - PIP5K1C Frame_Shift_Del p.L302Rfs*82 0.30 TCGA-FR-A728-01 19 3779719 3779719 G A MATK Silent p.F274F 0.10 TCGA-FR-A728-01 19 3784874 3784874 G A MATK Silent p.P28P 0.41 TCGA-FR-A728-01 19 41071599 41071599 G A SPTBN4 Silent p.R2029R 0.20 TCGA-FR-A728-01 19 41601683 41601683 G A CYP2A13 Missense_Mutation p.G441E 0.17 deleterious(0) probably_damaging(0.982) TCGA-FR-A728-01 19 42222163 42222163 G A CEACAM5 Missense_Mutation p.D452N 0.16 tolerated(1) benign(0.021) TCGA-FR-A728-01 19 44511189 44511189 C T ZNF230 5'UTR 0.07 TCGA-FR-A728-01 19 48220034 48220034 C T EHD2 Silent p.F55F 0.13 TCGA-FR-A728-01 19 49894072 49894072 C T CCDC155 5'UTR 0.33 TCGA-FR-A728-01 19 50958882 50958882 G A MYBPC2 Silent p.V773V 0.27 TCGA-FR-A728-01 19 52249917 52249917 C A FPR1 Nonsense_Mutation p.G111* 0.15 TCGA-FR-A728-01 19 52327716 52327716 C T FPR3 Missense_Mutation p.P239S 0.27 tolerated(0.07) possibly_damaging(0.859) TCGA-FR-A728-01 19 52618677 52618677 A C ZNF616 Missense_Mutation p.N580K 0.06 deleterious(0.03) benign(0.445) TCGA-FR-A728-01 19 54080812 54080812 G A ZNF331 Missense_Mutation p.G333E 0.07 deleterious(0.01) probably_damaging(1) TCGA-FR-A728-01 19 54496069 54496069 C T CACNG6 5'UTR 0.09 TCGA-FR-A728-01 19 54496070 54496070 C T CACNG6 5'UTR 0.11 TCGA-FR-A728-01 19 54744329 54744329 C T LILRA6 Missense_Mutation p.G360E 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-FR-A728-01 19 54802107 54802107 C T LILRA3 Missense_Mutation p.G361R 0.26 deleterious(0.01) possibly_damaging(0.824) TCGA-FR-A728-01 19 56539610 56539610 C T NLRP5 Silent p.L671L 0.38 TCGA-FR-A728-01 19 57175051 57175051 C T ZNF835 Missense_Mutation p.A506T 0.13 tolerated_low_confidence(0.71) benign(0.005) TCGA-FR-A728-01 19 5867487 5867487 G A FUT5 Missense_Mutation p.P84S 0.20 deleterious(0) probably_damaging(0.969) TCGA-FR-A728-01 19 8577550 8577550 G A ZNF414 Missense_Mutation p.P121L 0.18 deleterious(0.04) benign(0.039) TCGA-FR-A728-01 19 8971809 8971809 C T MUC16 Silent p.L14261L 0.29 TCGA-FR-A728-01 19 8976777 8976777 C T MUC16 Missense_Mutation p.A14097T 0.27 probably_damaging(0.931) TCGA-FR-A728-01 19 9063136 9063136 C T MUC16 Missense_Mutation p.G8104S 0.18 unknown(0) TCGA-FR-A728-01 19 9066305 9066305 C T MUC16 Silent p.L7047L 0.18 TCGA-FR-A728-01 19 9070709 9070709 G A MUC16 Silent p.I5579I 0.21 TCGA-FR-A728-01 19 9075548 9075548 G A MUC16 Silent p.S3966S 0.18 TCGA-FR-A728-01 1 144874021 144874021 G A PDE4DIP Missense_Mutation p.H1646Y 0.05 tolerated(0.06) benign(0.005) TCGA-FR-A728-01 1 152005158 152005158 G A S100A11 Missense_Mutation p.P100S 0.36 tolerated(0.47) benign(0) TCGA-FR-A728-01 1 152191470 152191470 C G HRNR Missense_Mutation p.G879R 0.28 unknown(0) TCGA-FR-A728-01 1 152276554 152276554 G C FLG Missense_Mutation p.A3603G 0.04 unknown(0) TCGA-FR-A728-01 1 152280442 152280442 G C FLG Missense_Mutation p.A2307G 0.07 benign(0.364) TCGA-FR-A728-01 1 152280510 152280510 G A FLG Silent p.S2284S 0.07 TCGA-FR-A728-01 1 152280639 152280639 G A FLG Silent p.S2241S 0.10 TCGA-FR-A728-01 1 152280720 152280720 G A FLG Silent p.S2214S 0.08 TCGA-FR-A728-01 1 152281481 152281481 G A FLG Missense_Mutation p.H1961Y 0.06 benign(0.152) TCGA-FR-A728-01 1 152281835 152281835 G A FLG Missense_Mutation p.H1843Y 0.12 benign(0.152) TCGA-FR-A728-01 1 152281944 152281944 G A FLG Silent p.S1806S 0.11 TCGA-FR-A728-01 1 152282164 152282164 G A FLG Missense_Mutation p.S1733L 0.10 benign(0.307) TCGA-FR-A728-01 1 152282359 152282359 G A FLG Missense_Mutation p.S1668L 0.12 benign(0.307) TCGA-FR-A728-01 1 152282389 152282389 G A FLG Missense_Mutation p.A1658V 0.11 possibly_damaging(0.483) TCGA-FR-A728-01 1 152282874 152282874 G A FLG Silent p.S1496S 0.13 TCGA-FR-A728-01 1 152283365 152283365 G C FLG Missense_Mutation p.H1333D 0.11 benign(0.227) TCGA-FR-A728-01 1 152283779 152283779 G A FLG Missense_Mutation p.H1195Y 0.13 benign(0.152) TCGA-FR-A728-01 1 152284198 152284198 G A FLG Missense_Mutation p.S1055L 0.14 probably_damaging(0.975) TCGA-FR-A728-01 1 152284416 152284416 G A FLG Silent p.S982S 0.11 TCGA-FR-A728-01 1 152284746 152284746 G C FLG Missense_Mutation p.S872R 0.08 benign(0.168) TCGA-FR-A728-01 1 152284892 152284892 G A FLG Nonsense_Mutation p.Q824* 0.12 TCGA-FR-A728-01 1 152285051 152285051 G A FLG Missense_Mutation p.H771Y 0.14 possibly_damaging(0.573) TCGA-FR-A728-01 1 152285437 152285437 G A FLG Missense_Mutation p.S642F 0.12 probably_damaging(0.988) TCGA-FR-A728-01 1 152681876 152681876 G A LCE4A 3'UTR 0.35 TCGA-FR-A728-01 1 153066196 153066196 G A SPRR2E Missense_Mutation p.P11L 0.17 tolerated_low_confidence(0.17) unknown(0) TCGA-FR-A728-01 1 155217681 155217681 C T FAM189B Silent p.L633L 0.17 TCGA-FR-A728-01 1 156230310 156230310 G A SMG5 Missense_Mutation p.P739S 0.24 tolerated(0.05) benign(0.438) TCGA-FR-A728-01 1 158621228 158621228 C T SPTA1 Missense_Mutation p.D1136N 0.24 tolerated(0.1) benign(0.094) TCGA-FR-A728-01 1 159176021 159176021 C T DARC Silent p.F266F 0.25 TCGA-FR-A728-01 1 159505344 159505344 C T OR10J5 Missense_Mutation p.G152S 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A728-01 1 159907525 159907525 G A IGSF9 Silent p.I117I 0.28 TCGA-FR-A728-01 1 160156121 160156121 G A ATP1A4 Missense_Mutation p.E1009K 0.28 deleterious(0) possibly_damaging(0.785) TCGA-FR-A728-01 1 166927016 166927016 C T ILDR2 Silent p.T123T 0.09 TCGA-FR-A728-01 1 17674444 17674444 G A PADI4 Missense_Mutation p.M352I 0.28 tolerated(0.43) benign(0.023) TCGA-FR-A728-01 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.13 deleterious(0) probably_damaging(0.994) TCGA-FR-A728-01 1 17723605 17723605 G A PADI6 RNA 0.17 TCGA-FR-A728-01 1 181689369 181689369 G A CACNA1E Silent p.V593V 0.06 TCGA-FR-A728-01 1 183201836 183201836 G A LAMC2 Silent p.E688E 0.14 TCGA-FR-A728-01 1 185191098 185191098 C T SWT1 Missense_Mutation p.P747S 0.21 tolerated(0.34) benign(0.141) TCGA-FR-A728-01 1 18703452 18703452 C T IGSF21 Silent p.G420G 0.14 TCGA-FR-A728-01 1 190067178 190067178 C T BRINP3 Missense_Mutation p.M757I 0.18 tolerated(0.28) benign(0) TCGA-FR-A728-01 1 196928281 196928281 C T CFHR2 3'UTR 0.18 TCGA-FR-A728-01 1 197069843 197069843 G A ASPM Silent p.F2846F 0.15 TCGA-FR-A728-01 1 200587697 200587697 G A KIF14 Missense_Mutation p.P52L 0.18 tolerated(0.48) benign(0.002) TCGA-FR-A728-01 1 204170779 204170779 C T GOLT1A Missense_Mutation p.G93E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 1 211652473 211652473 C T RD3 Missense_Mutation p.D165N 0.31 tolerated(0.13) benign(0.271) TCGA-FR-A728-01 1 226109591 226109591 G A PYCR2 Silent p.A169A 0.14 TCGA-FR-A728-01 1 228582834 228582834 G A TRIM11 Missense_Mutation p.P327S 0.14 tolerated(0.2) possibly_damaging(0.475) TCGA-FR-A728-01 1 228582835 228582835 G A TRIM11 Silent p.D326D 0.12 TCGA-FR-A728-01 1 235394494 235394494 G T ARID4B Missense_Mutation p.P226T 0.19 tolerated(0.2) possibly_damaging(0.639) TCGA-FR-A728-01 1 236154198 236154198 G A NID1 Silent p.F972F 0.24 TCGA-FR-A728-01 1 236902617 236902617 C T ACTN2 Missense_Mutation p.R298C 0.21 deleterious(0) possibly_damaging(0.723) TCGA-FR-A728-01 1 247769251 247769251 C T OR2G3 Missense_Mutation p.R122W 0.23 deleterious(0) probably_damaging(0.983) TCGA-FR-A728-01 1 28599254 28599254 C T SESN2 Missense_Mutation p.P234S 0.30 tolerated(0.8) benign(0.002) TCGA-FR-A728-01 1 38227280 38227280 C T EPHA10 Missense_Mutation p.R216Q 0.31 tolerated(0.48) benign(0.039) TCGA-FR-A728-01 1 47717196 47717196 G A STIL Missense_Mutation p.S1160F 0.11 tolerated(0.15) benign(0.216) TCGA-FR-A728-01 1 52255316 52255316 T G NRD1 Missense_Mutation p.K1129T 0.18 deleterious(0) possibly_damaging(0.889) TCGA-FR-A728-01 1 53925214 53925214 T G DMRTB1 Missense_Mutation p.C30G 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 1 55088976 55088976 G A FAM151A Silent p.V31V 0.13 TCGA-FR-A728-01 1 64120092 64120092 C T PGM1 Silent p.I536I 0.15 TCGA-FR-A728-01 1 65871574 65871574 A G DNAJC6 Missense_Mutation p.K750R 0.18 tolerated(0.11) probably_damaging(0.936) TCGA-FR-A728-01 1 78560648 78560648 G T GIPC2 Missense_Mutation p.G147C 0.13 deleterious(0) probably_damaging(0.988) TCGA-FR-A728-01 1 91788710 91788710 C T HFM1 Missense_Mutation p.R825K 0.12 deleterious(0) probably_damaging(0.98) TCGA-FR-A728-01 1 91846507 91846507 G A HFM1 Missense_Mutation p.P279S 0.07 deleterious(0.03) benign(0.196) TCGA-FR-A728-01 1 92713532 92713532 T G GLMN Silent p.T496T 0.10 TCGA-FR-A728-01 1 949800 949800 C T ISG15 Missense_Mutation p.T147I 0.15 tolerated(0.07) possibly_damaging(0.67) TCGA-FR-A728-01 1 97770823 97770823 C T DPYD Missense_Mutation p.G764E 0.11 deleterious(0) probably_damaging(0.991) TCGA-FR-A728-01 20 1551694 1551694 C T SIRPB1 Missense_Mutation p.G281R 0.34 tolerated(1) benign(0.005) TCGA-FR-A728-01 20 22562646 22562646 C T FOXA2 Missense_Mutation p.E412K 0.11 deleterious(0) probably_damaging(0.996) TCGA-FR-A728-01 20 33570283 33570283 G A MYH7B Silent p.K225K 0.29 TCGA-FR-A728-01 20 44444364 44444364 C T UBE2C Missense_Mutation p.S134F 0.10 deleterious(0) probably_damaging(0.985) TCGA-FR-A728-01 20 55027624 55027624 G A CASS4 Silent p.R464R 0.14 TCGA-FR-A728-01 20 57415389 57415389 C T RP4-806M20.3 5'Flank 0.21 TCGA-FR-A728-01 20 57415390 57415390 C T RP4-806M20.3 5'Flank 0.20 TCGA-FR-A728-01 20 61471942 61471942 C T COL9A3 Missense_Mutation p.P638L 0.22 tolerated(0.19) benign(0.034) TCGA-FR-A728-01 20 61936809 61936809 T C COL20A1 Silent p.P78P 0.16 TCGA-FR-A728-01 20 9402034 9402034 G A PLCB4 Missense_Mutation p.E737K 0.38 tolerated(0.16) probably_damaging(0.999) TCGA-FR-A728-01 21 44474080 44474080 C T CBS Silent p.G522G 0.11 TCGA-FR-A728-01 21 45821756 45821756 C T TRPM2 Silent p.S838S 0.15 TCGA-FR-A728-01 22 17071966 17071966 C T CCT8L2 Missense_Mutation p.G492E 0.13 tolerated(0.47) benign(0.137) TCGA-FR-A728-01 22 19808759 19808759 G A GNB1L Silent p.L40L 0.23 TCGA-FR-A728-01 22 20796358 20796358 G A KLHL22 3'UTR 0.24 TCGA-FR-A728-01 22 24086047 24086047 G A ZNF70 Silent p.S427S 0.27 TCGA-FR-A728-01 22 24583970 24583970 G A SUSD2 Silent p.K736K 0.11 TCGA-FR-A728-01 22 25294011 25294011 C T SGSM1 Missense_Mutation p.P754S 0.13 tolerated(0.13) benign(0.006) TCGA-FR-A728-01 22 25294012 25294012 C T SGSM1 Missense_Mutation p.P754L 0.13 tolerated(0.06) benign(0.006) TCGA-FR-A728-01 22 26422972 26422972 G A MYO18B Silent p.S2344S 0.20 TCGA-FR-A728-01 22 37334358 37334358 G A CSF2RB Silent p.R836R 0.14 TCGA-FR-A728-01 22 38934574 38934574 G A DMC1 Silent p.F210F 0.12 TCGA-FR-A728-01 22 39918182 39918182 G A ATF4 Missense_Mutation p.E211K 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A728-01 22 41647096 41647096 G A RANGAP1 Silent p.P466P 0.33 TCGA-FR-A728-01 2 102632507 102632507 G A IL1R2 Nonsense_Mutation p.W169* 0.23 TCGA-FR-A728-01 2 108487477 108487477 C T RGPD4 Missense_Mutation p.S1006L 0.21 deleterious(0.03) benign(0.109) TCGA-FR-A728-01 2 113513897 113513897 T A CKAP2L Missense_Mutation p.I351F 0.20 tolerated(0.39) benign(0.025) TCGA-FR-A728-01 2 130833050 130833050 C T POTEF Missense_Mutation p.M665I 0.19 tolerated_low_confidence(0.32) benign(0.005) TCGA-FR-A728-01 2 136533840 136533840 C T UBXN4 Silent p.F324F 0.21 TCGA-FR-A728-01 2 141202165 141202165 C T LRP1B Missense_Mutation p.D3381N 0.12 possibly_damaging(0.822) TCGA-FR-A728-01 2 141232780 141232780 A - LRP1B Frame_Shift_Del p.N3185Ifs*33 0.21 TCGA-FR-A728-01 2 141460047 141460047 G A LRP1B Silent p.V2033V 0.22 TCGA-FR-A728-01 2 149226198 149226198 C T MBD5 Missense_Mutation p.S229F 0.26 deleterious(0) possibly_damaging(0.683) TCGA-FR-A728-01 2 159481574 159481574 C T PKP4 Missense_Mutation p.S263F 0.17 tolerated(0.08) benign(0.013) TCGA-FR-A728-01 2 160205673 160205673 G A BAZ2B Missense_Mutation p.S1661L 0.22 benign(0.005) TCGA-FR-A728-01 2 163279821 163279821 C T KCNH7 Intron 0.28 TCGA-FR-A728-01 2 170403158 170403158 G A FASTKD1 Missense_Mutation p.S424F 0.06 deleterious(0) possibly_damaging(0.907) TCGA-FR-A728-01 2 171822719 171822719 C T GORASP2 3'UTR 0.30 TCGA-FR-A728-01 2 179528403 179528403 C T TTN Silent p.K12161K 0.11 TCGA-FR-A728-01 2 179577239 179577239 C T TTN Missense_Mutation p.G9137E 0.29 TCGA-FR-A728-01 2 179589238 179589238 C T TTN Missense_Mutation p.G6955E 0.36 TCGA-FR-A728-01 2 188343486 188343486 T C TFPI Intron 0.19 TCGA-FR-A728-01 2 1921086 1921086 C T MYT1L Silent p.E501E 0.22 TCGA-FR-A728-01 2 196726627 196726627 A C DNAH7 Missense_Mutation p.L2517W 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 2 201721535 201721535 C T CLK1 Splice_Site p.X352_splice 0.10 TCGA-FR-A728-01 2 21247899 21247899 C T APOB Missense_Mutation p.G781E 0.11 probably_damaging(1) TCGA-FR-A728-01 2 213872476 213872476 C T IKZF2 Missense_Mutation p.E397K 0.16 tolerated(0.51) possibly_damaging(0.676) TCGA-FR-A728-01 2 224824666 224824666 A T MRPL44 Missense_Mutation p.I199F 0.17 deleterious(0) benign(0.202) TCGA-FR-A728-01 2 230231729 230231729 C T DNER Silent p.L654L 0.19 TCGA-FR-A728-01 2 241689929 241689929 A T KIF1A Missense_Mutation p.V965D 0.32 deleterious(0) probably_damaging(0.967) TCGA-FR-A728-01 2 242814479 242814479 G A CXXC11 Missense_Mutation p.G258S 0.31 deleterious(0.02) possibly_damaging(0.629) TCGA-FR-A728-01 2 46411926 46411926 C T PRKCE Missense_Mutation p.P707L 0.16 deleterious(0.03) probably_damaging(0.962) TCGA-FR-A728-01 2 48915379 48915379 C T LHCGR Silent p.V519V 0.25 TCGA-FR-A728-01 2 74751292 74751292 C T DQX1 Missense_Mutation p.E192K 0.20 tolerated(0.52) benign(0) TCGA-FR-A728-01 2 89185581 89185581 G A IGKV4-1 Missense_Mutation p.G92E 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 2 96795629 96795629 A G ASTL Missense_Mutation p.S270P 0.25 tolerated(0.18) probably_damaging(0.956) TCGA-FR-A728-01 2 97217915 97217915 C T ARID5A Silent p.G550G 0.16 TCGA-FR-A728-01 3 10428197 10428197 C T ATP2B2 Splice_Site p.X303_splice 0.19 TCGA-FR-A728-01 3 111343235 111343235 G A CD96 Silent p.G451G 0.16 TCGA-FR-A728-01 3 114070173 114070173 G A ZBTB20 Missense_Mutation p.S251F 0.13 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-FR-A728-01 3 119198909 119198909 C T POGLUT1 Silent p.Y156Y 0.21 TCGA-FR-A728-01 3 119338471 119338471 C T PLA1A Silent p.L328L 0.28 TCGA-FR-A728-01 3 119338472 119338472 C T PLA1A Silent p.L329L 0.28 TCGA-FR-A728-01 3 121340282 121340282 G A FBXO40 Silent p.G2G 0.13 TCGA-FR-A728-01 3 122418395 122418395 A G PARP14 Missense_Mutation p.K332E 0.10 deleterious(0.05) benign(0.091) TCGA-FR-A728-01 3 130281956 130281956 C T COL6A6 Missense_Mutation p.R37C 0.29 deleterious(0.02) possibly_damaging(0.606) TCGA-FR-A728-01 3 133098820 133098820 G A TMEM108 Missense_Mutation p.E89K 0.16 tolerated_low_confidence(0.07) benign(0.058) TCGA-FR-A728-01 3 142215268 142215268 G A ATR Missense_Mutation p.L1945F 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 3 150881739 150881739 G A MED12L Silent p.K389K 0.12 TCGA-FR-A728-01 3 151012647 151012647 G A GPR87 Silent p.I129I 0.24 TCGA-FR-A728-01 3 155861180 155861180 C T KCNAB1 Intron 0.09 TCGA-FR-A728-01 3 16450918 16450918 C T RFTN1 Silent p.P135P 0.08 TCGA-FR-A728-01 3 165548153 165548156 AAAG - BCHE Frame_Shift_Del p.F223Efs*38 0.12 TCGA-FR-A728-01 3 169639070 169639070 C T SAMD7 Missense_Mutation p.S52F 0.22 tolerated(0.23) benign(0.019) TCGA-FR-A728-01 3 195984740 195984740 G A PCYT1A Missense_Mutation p.P46S 0.19 deleterious(0.01) benign(0.446) TCGA-FR-A728-01 3 36547315 36547315 T G STAC Missense_Mutation p.D303E 0.33 deleterious(0) probably_damaging(0.925) TCGA-FR-A728-01 3 36779908 36779908 C T DCLK3 Silent p.E81E 0.26 TCGA-FR-A728-01 3 36872688 36872688 C T TRANK1 Missense_Mutation p.E2752K 0.25 deleterious(0.02) possibly_damaging(0.667) TCGA-FR-A728-01 3 38833623 38833623 G T SCN10A Silent p.R103R 0.21 TCGA-FR-A728-01 3 38921480 38921480 G A SCN11A Silent p.F1118F 0.11 TCGA-FR-A728-01 3 44488684 44488684 G C ZNF445 Missense_Mutation p.P827A 0.14 tolerated(0.97) unknown(0) TCGA-FR-A728-01 3 46560468 46560468 C T LRRC2 3'UTR 0.24 TCGA-FR-A728-01 3 49836213 49836213 C T CDHR4 Intron 0.19 TCGA-FR-A728-01 3 54537665 54537665 G A CACNA2D3 Silent p.T176T 0.35 TCGA-FR-A728-01 3 57488191 57488191 G A DNAH12 Missense_Mutation p.P368S 0.27 tolerated(0.51) benign(0.037) TCGA-FR-A728-01 3 64627645 64627645 G A ADAMTS9 Missense_Mutation p.P579S 0.09 tolerated(0.5) benign(0.265) TCGA-FR-A728-01 3 7456804 7456804 G A GRM7 Silent p.L376L 0.15 TCGA-FR-A728-01 3 97467532 97467532 G A EPHA6 Missense_Mutation p.G1127E 0.12 deleterious(0.01) probably_damaging(1) TCGA-FR-A728-01 3 97851905 97851905 C T OR5H1 Missense_Mutation p.R122C 0.24 deleterious(0) probably_damaging(0.995) TCGA-FR-A728-01 4 104640555 104640555 C T TACR3 Missense_Mutation p.G93D 0.25 tolerated(0.07) possibly_damaging(0.613) TCGA-FR-A728-01 4 11400980 11400980 C T HS3ST1 Missense_Mutation p.G217D 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 4 114275488 114275488 C T ANK2 Missense_Mutation p.S1905L 0.29 probably_damaging(0.999) TCGA-FR-A728-01 4 123161432 123161432 G A KIAA1109 Missense_Mutation p.R1532H 0.11 probably_damaging(0.998) TCGA-FR-A728-01 4 123178525 123178525 C T KIAA1109 Missense_Mutation p.P2165L 0.09 probably_damaging(0.954) TCGA-FR-A728-01 4 138451298 138451298 A T PCDH18 Missense_Mutation p.Y649N 0.28 tolerated(0.58) benign(0.003) TCGA-FR-A728-01 4 158282219 158282219 G T GRIA2 Intron 0.32 TCGA-FR-A728-01 4 169845457 169845457 G A PALLD Missense_Mutation p.G1037E 0.16 tolerated(0.13) probably_damaging(0.989) TCGA-FR-A728-01 4 177041015 177041015 C T WDR17 Intron 0.10 TCGA-FR-A728-01 4 188924337 188924337 G A ZFP42 Missense_Mutation p.G126R 0.12 deleterious(0.04) probably_damaging(0.927) TCGA-FR-A728-01 4 188924338 188924338 G A ZFP42 Missense_Mutation p.G126E 0.12 tolerated(0.26) benign(0.227) TCGA-FR-A728-01 4 47525150 47525150 G A ATP10D Missense_Mutation p.G203R 0.15 tolerated(0.05) probably_damaging(0.98) TCGA-FR-A728-01 4 650802 650802 T C PDE6B Missense_Mutation p.V416A 0.19 tolerated(0.52) benign(0.142) TCGA-FR-A728-01 4 6600035 6600035 C T MAN2B2 Silent p.I453I 0.20 TCGA-FR-A728-01 4 66509113 66509113 C T EPHA5 Missense_Mutation p.D72N 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A728-01 4 70160326 70160326 G A UGT2B28 Nonsense_Mutation p.W463* 0.21 TCGA-FR-A728-01 4 70361447 70361447 C T UGT2B4 Missense_Mutation p.E45K 0.24 deleterious(0.04) benign(0.424) TCGA-FR-A728-01 4 74308046 74308046 C T AFP Silent p.F172F 0.08 TCGA-FR-A728-01 4 7435431 7435431 C T PSAPL1 Silent p.Q392Q 0.26 TCGA-FR-A728-01 4 77660220 77660220 G A SHROOM3 Silent p.G298G 0.14 TCGA-FR-A728-01 4 853458 853458 G A GAK Silent p.S1073S 0.22 TCGA-FR-A728-01 4 88902886 88902886 G A SPP1 Missense_Mutation p.R159Q 0.11 deleterious(0) possibly_damaging(0.863) TCGA-FR-A728-01 4 96199491 96199491 C T UNC5C Silent p.Q171Q 0.09 TCGA-FR-A728-01 4 99966337 99966337 C T METAP1 Silent p.I221I 0.14 TCGA-FR-A728-01 5 121187647 121187647 G A FTMT 5'Flank 0.22 TCGA-FR-A728-01 5 133481796 133481796 G A TCF7 Intron 0.08 TCGA-FR-A728-01 5 13727621 13727621 C T DNAH5 Missense_Mutation p.A4010T 0.19 possibly_damaging(0.798) TCGA-FR-A728-01 5 13753350 13753350 C T DNAH5 Missense_Mutation p.E3622K 0.25 possibly_damaging(0.621) TCGA-FR-A728-01 5 13789006 13789006 C T DNAH5 Nonsense_Mutation p.W2822* 0.11 TCGA-FR-A728-01 5 13807748 13807748 C T DNAH5 Missense_Mutation p.M2613I 0.34 benign(0.001) TCGA-FR-A728-01 5 139908068 139908068 C T ANKHD1 Missense_Mutation p.S1846F 0.19 probably_damaging(0.928) TCGA-FR-A728-01 5 140184713 140184713 G A PCDHA2 Intron 0.15 TCGA-FR-A728-01 5 140237206 140237206 G A PCDHA10 Missense_Mutation p.E525K 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A728-01 5 140348322 140348322 C A PCDHAC2 Missense_Mutation p.N657K 0.19 tolerated(0.39) benign(0.115) TCGA-FR-A728-01 5 140580066 140580066 C T PCDHB11 Missense_Mutation p.P240L 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FR-A728-01 5 140735539 140735539 G A PCDHGA4 Missense_Mutation p.G258S 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A728-01 5 140752354 140752354 C T PCDHGB3 Missense_Mutation p.S798F 0.12 tolerated(0.78) benign(0.359) TCGA-FR-A728-01 5 143586517 143586517 C T KCTD16 Silent p.F80F 0.07 TCGA-FR-A728-01 5 146785290 146785290 C T DPYSL3 Missense_Mutation p.E346K 0.23 deleterious(0) probably_damaging(0.995) TCGA-FR-A728-01 5 147207631 147207631 C T SPINK1 Missense_Mutation p.D50N 0.16 deleterious(0.03) benign(0.137) TCGA-FR-A728-01 5 147481356 147481356 G A SPINK5 Missense_Mutation p.E439K 0.27 tolerated(0.06) possibly_damaging(0.637) TCGA-FR-A728-01 5 147692055 147692055 C T SPINK7 Silent p.I3I 0.18 TCGA-FR-A728-01 5 150321791 150321791 C T ZNF300P1 RNA 0.21 TCGA-FR-A728-01 5 154395623 154395623 G A KIF4B Missense_Mutation p.G735E 0.23 tolerated(0.09) benign(0.065) TCGA-FR-A728-01 5 157214730 157214730 G A CLINT1 Missense_Mutation p.P619L 0.28 deleterious(0.03) benign(0.424) TCGA-FR-A728-01 5 174869039 174869039 T A DRD1 Missense_Mutation p.N355I 0.19 tolerated(0.22) benign(0) TCGA-FR-A728-01 5 175824933 175824933 A G CLTB Missense_Mutation p.L117P 0.08 tolerated(0.1) benign(0.075) TCGA-FR-A728-01 5 180166542 180166542 G A OR2Y1 Silent p.L173L 0.28 TCGA-FR-A728-01 5 26881494 26881494 C T CDH9 Nonsense_Mutation p.W707* 0.19 TCGA-FR-A728-01 5 26906072 26906072 G T CDH9 Silent p.P269P 0.10 TCGA-FR-A728-01 5 34824413 34824413 C T RAI14 Silent p.V825V 0.20 TCGA-FR-A728-01 5 35068320 35068320 C T PRLR Missense_Mutation p.E285K 0.15 tolerated(0.35) benign(0.279) TCGA-FR-A728-01 5 35867443 35867443 G A IL7R Missense_Mutation p.R86K 0.29 tolerated(0.7) benign(0.009) TCGA-FR-A728-01 5 41009403 41009403 G A MROH2B Silent p.I1133I 0.19 TCGA-FR-A728-01 5 457102 457102 C G EXOC3 Missense_Mutation p.T382R 0.22 tolerated(0.41) possibly_damaging(0.676) TCGA-FR-A728-01 5 78350033 78350033 T C DMGDH Missense_Mutation p.M172V 0.21 tolerated(0.14) benign(0.014) TCGA-FR-A728-01 5 88100421 88100421 G A MEF2C Silent p.I84I 0.16 TCGA-FR-A728-01 6 122768298 122768298 T A SERINC1 Silent p.L321L 0.37 TCGA-FR-A728-01 6 128388766 128388766 G A PTPRK Silent p.F685F 0.32 TCGA-FR-A728-01 6 130374067 130374067 G A L3MBTL3 Silent p.R171R 0.34 TCGA-FR-A728-01 6 135518445 135518445 C T MYB Missense_Mutation p.P517L 0.32 deleterious(0) possibly_damaging(0.682) TCGA-FR-A728-01 6 159635981 159635981 G A FNDC1 Silent p.K155K 0.49 TCGA-FR-A728-01 6 160577065 160577065 C T SLC22A1 Silent p.V519V 0.26 TCGA-FR-A728-01 6 167721278 167721278 C T UNC93A Missense_Mutation p.H330Y 0.18 deleterious(0.04) benign(0.282) TCGA-FR-A728-01 6 25921539 25921539 C T SLC17A2 Silent p.G114G 0.23 TCGA-FR-A728-01 6 2685552 2685552 C T MYLK4 Missense_Mutation p.D175N 0.09 tolerated(0.35) benign(0.031) TCGA-FR-A728-01 6 28471966 28471966 G A GPX6 3'UTR 0.25 TCGA-FR-A728-01 6 28542714 28542714 C T SCAND3 Missense_Mutation p.E590K 0.16 tolerated_low_confidence(0.15) benign(0) TCGA-FR-A728-01 6 29323323 29323323 G A OR5V1 Missense_Mutation p.S217F 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 6 31133980 31133980 A G POU5F1 Intron 0.18 TCGA-FR-A728-01 6 32064886 32064886 G A TNXB Silent p.S248S 0.12 TCGA-FR-A728-01 6 32188654 32188654 A G NOTCH4 Silent p.G267G 0.11 TCGA-FR-A728-01 6 33359770 33359770 C T KIFC1 Missense_Mutation p.P3L 0.22 tolerated_low_confidence(0.31) benign(0.026) TCGA-FR-A728-01 6 33423652 33423652 C T ZBTB9 Missense_Mutation p.P259S 0.32 tolerated(0.3) benign(0.004) TCGA-FR-A728-01 6 42713449 42713449 C T TBCC Silent p.Q121Q 0.23 TCGA-FR-A728-01 6 54804659 54804659 G A FAM83B Missense_Mutation p.G297E 0.20 tolerated(0.19) benign(0.075) TCGA-FR-A728-01 6 73043305 73043305 C T RIMS1 Missense_Mutation p.S1378L 0.21 tolerated(0.53) benign(0.196) TCGA-FR-A728-01 7 100350032 100350032 C T ZAN Silent p.I768I 0.21 TCGA-FR-A728-01 7 11415376 11415376 G A THSD7A 3'UTR 0.19 TCGA-FR-A728-01 7 114656037 114656037 C T MDFIC 3'UTR 0.15 TCGA-FR-A728-01 7 120596300 120596300 C T ING3 Intron 0.10 TCGA-FR-A728-01 7 128481230 128481230 C T FLNC Missense_Mutation p.S607F 0.11 deleterious(0) possibly_damaging(0.691) TCGA-FR-A728-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-FR-A728-01 7 141722126 141722126 C T MGAM Nonsense_Mutation p.R257* 0.23 TCGA-FR-A728-01 7 142104319 142104319 C T TRBV6-9 Missense_Mutation p.G49E 0.26 tolerated(0.33) benign(0.001) TCGA-FR-A728-01 7 142180721 142180721 C T TRBV6-5 Missense_Mutation p.M46I 0.07 tolerated(0.06) benign(0.403) TCGA-FR-A728-01 7 142498915 142498915 G A TRBC2 Silent p.K64K 0.09 TCGA-FR-A728-01 7 146825838 146825838 G A CNTNAP2 Silent p.K331K 0.23 TCGA-FR-A728-01 7 150269699 150269699 A C GIMAP4 Missense_Mutation p.I181L 0.23 deleterious(0.03) benign(0.038) TCGA-FR-A728-01 7 150557643 150557643 C T AOC1 Silent p.I637I 0.26 TCGA-FR-A728-01 7 150698489 150698489 C T NOS3 Silent p.F468F 0.31 TCGA-FR-A728-01 7 150746419 150746419 C T ASIC3 Silent p.L149L 0.19 TCGA-FR-A728-01 7 15726028 15726028 A C MEOX2 5'UTR 0.21 TCGA-FR-A728-01 7 20668448 20668448 C T ABCB5 Silent p.V82V 0.19 TCGA-FR-A728-01 7 33644886 33644886 G A BBS9 3'UTR 0.21 TCGA-FR-A728-01 7 36895242 36895242 C T ELMO1 Missense_Mutation p.D700N 0.26 deleterious(0) probably_damaging(0.93) TCGA-FR-A728-01 7 43843348 43843348 C T BLVRA Silent p.S178S 0.27 TCGA-FR-A728-01 7 48311814 48311814 G A ABCA13 Missense_Mutation p.E851K 0.24 benign(0.176) TCGA-FR-A728-01 7 6078216 6078216 G A EIF2AK1 Silent p.G402G 0.24 TCGA-FR-A728-01 7 63721270 63721270 G A ZNF679 Nonsense_Mutation p.W75* 0.22 TCGA-FR-A728-01 7 6859471 6859471 G A CCZ1B Silent p.S208S 0.19 TCGA-FR-A728-01 7 71036281 71036281 T G WBSCR17 Missense_Mutation p.M325R 0.22 deleterious(0) benign(0.405) TCGA-FR-A728-01 7 76062813 76062813 C T ZP3 Missense_Mutation p.P188S 0.24 tolerated(0.4) benign(0.145) TCGA-FR-A728-01 7 77267943 77267943 C T PTPN12 Missense_Mutation p.H726Y 0.21 tolerated(0.49) benign(0.107) TCGA-FR-A728-01 8 101717274 101717274 C G PABPC1 Silent p.L566L 0.17 TCGA-FR-A728-01 8 103291322 103291322 G A UBR5 Missense_Mutation p.P2039L 0.20 deleterious(0) probably_damaging(0.966) TCGA-FR-A728-01 8 10480555 10480555 C G RP1L1 Missense_Mutation p.V53L 0.16 probably_damaging(0.999) TCGA-FR-A728-01 8 104987641 104987641 C T RIMS2 Missense_Mutation p.S945L 0.15 deleterious_low_confidence(0.04) benign(0.321) TCGA-FR-A728-01 8 108334194 108334194 G A ANGPT1 Silent p.V246V 0.15 TCGA-FR-A728-01 8 11702574 11702574 A T CTSB 3'UTR 0.33 TCGA-FR-A728-01 8 128428549 128428549 C T POU5F1B Silent p.L146L 0.30 TCGA-FR-A728-01 8 128753318 128753318 C T MYC 3'UTR 0.36 TCGA-FR-A728-01 8 133492517 133492517 A T KCNQ3 Missense_Mutation p.L88Q 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A728-01 8 133913694 133913694 C T TG Missense_Mutation p.S1177F 0.08 deleterious(0.02) benign(0.133) TCGA-FR-A728-01 8 17611942 17611942 G A MTUS1 Nonsense_Mutation p.R459* 0.17 TCGA-FR-A728-01 8 24254940 24254940 C T ADAMDEC1 Nonsense_Mutation p.R200* 0.17 TCGA-FR-A728-01 8 24774977 24774977 G A NEFM Missense_Mutation p.E537K 0.35 tolerated(0.23) unknown(0) TCGA-FR-A728-01 8 27398083 27398083 T C EPHX2 Missense_Mutation p.V430A 0.40 tolerated(0.19) benign(0.002) TCGA-FR-A728-01 8 30699772 30699772 G A TEX15 Silent p.F2254F 0.13 TCGA-FR-A728-01 8 35541213 35541213 G A UNC5D Missense_Mutation p.R240K 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-FR-A728-01 8 37704430 37704430 G A BRF2 Silent p.L160L 0.31 TCGA-FR-A728-01 8 52323936 52323936 G A PXDNL Nonsense_Mutation p.Q646* 0.19 TCGA-FR-A728-01 8 55537374 55537374 C T RP1 Missense_Mutation p.P311L 0.29 tolerated(0.37) benign(0.001) TCGA-FR-A728-01 8 55537653 55537653 T A RP1 Nonsense_Mutation p.L404* 0.19 TCGA-FR-A728-01 8 55542220 55542220 A G RP1 Silent p.Q1926Q 0.13 TCGA-FR-A728-01 8 73848946 73848946 G A KCNB2 Missense_Mutation p.M452I 0.19 tolerated(0.25) benign(0.17) TCGA-FR-A728-01 8 95188886 95188886 C T CDH17 Missense_Mutation p.G103R 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A728-01 9 100071848 100071848 C T CCDC180 Silent p.L118L 0.21 TCGA-FR-A728-01 9 100071849 100071849 C T CCDC180 Missense_Mutation p.P119S 0.22 deleterious(0.01) possibly_damaging(0.827) TCGA-FR-A728-01 9 118949536 118949536 C T PAPPA Silent p.S173S 0.11 TCGA-FR-A728-01 9 120475549 120475549 T G TLR4 Missense_Mutation p.S381R 0.21 deleterious(0.02) possibly_damaging(0.567) TCGA-FR-A728-01 9 125316037 125316037 G A OR1N2 Missense_Mutation p.D197N 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A728-01 9 125316085 125316085 G A OR1N2 Missense_Mutation p.E213K 0.27 tolerated(0.06) benign(0.076) TCGA-FR-A728-01 9 125486280 125486280 G A OR1L4 Silent p.K4K 0.14 TCGA-FR-A728-01 9 130479963 130479963 C T TTC16 Missense_Mutation p.S113L 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 9 13107084 13107084 C T MPDZ Silent p.L2002L 0.13 TCGA-FR-A728-01 9 131783377 131783377 G A SH3GLB2 Silent p.T109T 0.26 TCGA-FR-A728-01 9 140968454 140968454 C T CACNA1B Missense_Mutation p.A1598V 0.12 deleterious(0) probably_damaging(0.992) TCGA-FR-A728-01 9 35074128 35074128 G A FANCG Silent p.L616L 0.10 TCGA-FR-A728-01 9 35714779 35714779 G A TLN1 Missense_Mutation p.P950L 0.23 tolerated(0.05) possibly_damaging(0.713) TCGA-FR-A728-01 9 35738842 35738842 C T GBA2 Silent p.K618K 0.23 TCGA-FR-A728-01 9 84533049 84533049 C T SPATA31D5P RNA 0.08 TCGA-FR-A728-01 9 916903 916903 G A DMRT1 Silent p.A321A 0.10 TCGA-FR-A728-01 9 94538034 94538034 G A ROR2 Missense_Mutation p.P55L 0.24 deleterious_low_confidence(0.01) benign(0.144) TCGA-FR-A728-01 9 95279917 95279917 G A ECM2 Intron 0.22 TCGA-FR-A728-01 9 96097800 96097800 C T C9orf129 Missense_Mutation p.G74E 0.12 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-FR-A728-01 9 99580717 99580717 C T ZNF782 Missense_Mutation p.G530R 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 X 100524119 100524119 T C TAF7L 3'UTR 0.22 TCGA-FR-A728-01 X 101970985 101970985 G A GPRASP2 Silent p.E396E 0.25 TCGA-FR-A728-01 X 101972339 101972339 C T GPRASP2 3'UTR 0.21 TCGA-FR-A728-01 X 102632840 102632840 C T NGFRAP1 3'UTR 0.32 TCGA-FR-A728-01 X 106840647 106840647 C T FRMPD3 Missense_Mutation p.S546L 0.24 deleterious(0.02) benign(0.078) TCGA-FR-A728-01 X 107920792 107920792 G A COL4A5 Missense_Mutation p.G1291R 0.23 probably_damaging(0.991) TCGA-FR-A728-01 X 110491155 110491155 A G CAPN6 Missense_Mutation p.V517A 0.10 deleterious(0.04) benign(0.006) TCGA-FR-A728-01 X 12627888 12627888 C T FRMPD4 Silent p.C69C 0.22 TCGA-FR-A728-01 X 12939584 12939584 C T TLR8 Nonsense_Mutation p.Q809* 0.07 TCGA-FR-A728-01 X 12994453 12994453 G A TMSB4X Missense_Mutation p.E25K 0.25 deleterious(0.03) benign(0.136) TCGA-FR-A728-01 X 135488088 135488088 G A GPR112 Silent p.R2964R 0.19 TCGA-FR-A728-01 X 135579940 135579940 G A HTATSF1 Missense_Mutation p.D33N 0.21 deleterious(0.04) benign(0.1) TCGA-FR-A728-01 X 151138696 151138696 G A GABRE Silent p.L79L 0.23 TCGA-FR-A728-01 X 152936792 152936792 G A PNCK Missense_Mutation p.P271S 0.23 tolerated(0.11) benign(0.013) TCGA-FR-A728-01 X 153095792 153095792 G A PDZD4 5'UTR 0.19 TCGA-FR-A728-01 X 153208325 153208325 C T RENBP Silent p.R223R 0.22 TCGA-FR-A728-01 X 153220723 153220723 G A HCFC1 Missense_Mutation p.P1043S 0.17 tolerated_low_confidence(0.12) benign(0.046) TCGA-FR-A728-01 X 153248064 153248064 A C TMEM187 Missense_Mutation p.H184P 0.18 deleterious(0.05) benign(0.086) TCGA-FR-A728-01 X 153543663 153543663 G A TKTL1 Silent p.E335E 0.21 TCGA-FR-A728-01 X 18606210 18606210 C T CDKL5 Missense_Mutation p.P231S 0.10 tolerated_low_confidence(0.07) probably_damaging(0.96) TCGA-FR-A728-01 X 19389528 19389528 C T MAP3K15 Missense_Mutation p.D1077N 0.25 deleterious(0.04) possibly_damaging(0.694) TCGA-FR-A728-01 X 21627729 21627729 G A CNKSR2 Missense_Mutation p.E896K 0.18 tolerated(0.41) benign(0.001) TCGA-FR-A728-01 X 23803853 23803853 G A SAT1 Nonsense_Mutation p.W132* 0.28 TCGA-FR-A728-01 X 32407672 32407672 C T DMD Silent p.L1488L 0.21 TCGA-FR-A728-01 X 32407693 32407693 C T DMD Silent p.V1481V 0.22 TCGA-FR-A728-01 X 38212016 38212016 C T OTC Nonsense_Mutation p.R23* 0.18 TCGA-FR-A728-01 X 47306773 47306773 C T ZNF41 3'UTR 0.16 TCGA-FR-A728-01 X 51488079 51488079 G T GSPT2 Missense_Mutation p.G453W 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A728-01 X 65413397 65413397 G A HEPH Nonsense_Mutation p.W483* 0.19 TCGA-FR-A728-01 X 70343519 70343519 A C MED12 Missense_Mutation p.I565L 0.15 benign(0.099) TCGA-FR-A728-01 X 71425190 71425190 C T ERCC6L Missense_Mutation p.E1143K 0.27 deleterious(0.04) benign(0.04) TCGA-FR-A728-01 X 76939783 76939783 G A ATRX Missense_Mutation p.S322L 0.19 benign(0.176) TCGA-FR-A728-01 X 78618594 78618594 C T ITM2A Missense_Mutation p.D96N 0.14 tolerated(0.32) benign(0.001) TCGA-FR-A728-01 X 79932502 79932502 C T BRWD3 Missense_Mutation p.G1672E 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-FR-A728-01 X 96197081 96197081 G A DIAPH2 Missense_Mutation p.D464N 0.26 deleterious(0) unknown(0) TCGA-FR-A728-01 X 99945162 99945162 C T SYTL4 Missense_Mutation p.E240K 0.25 tolerated(0.33) possibly_damaging(0.505) TCGA-FR-A729-06 10 103912100 103912100 C T NOLC1 5'UTR 0.36 TCGA-FR-A729-06 10 105037767 105037767 G A INA Missense_Mutation p.E267K 0.50 deleterious(0) probably_damaging(0.986) TCGA-FR-A729-06 10 108337129 108337129 G A SORCS1 Intron 0.32 TCGA-FR-A729-06 10 115536988 115536988 C T PLEKHS1 Silent p.S379S 0.41 TCGA-FR-A729-06 10 118969334 118969334 C T KCNK18 Silent p.L227L 0.39 TCGA-FR-A729-06 10 129536857 129536857 G A FOXI2 Silent p.R195R 0.43 TCGA-FR-A729-06 10 135013019 135013019 C T KNDC1 Missense_Mutation p.S939F 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-FR-A729-06 10 16982114 16982114 G A CUBN Missense_Mutation p.S1822F 0.17 deleterious(0.01) benign(0.208) TCGA-FR-A729-06 10 20335861 20335861 G A PLXDC2 Missense_Mutation p.D130N 0.48 tolerated(0.22) benign(0.007) TCGA-FR-A729-06 10 21147230 21147230 G A NEBL Missense_Mutation p.S281L 0.43 deleterious(0.01) benign(0.387) TCGA-FR-A729-06 10 28225794 28225794 C T ARMC4 Missense_Mutation p.E705K 0.38 tolerated(0.05) possibly_damaging(0.824) TCGA-FR-A729-06 10 29770532 29770532 C T SVIL Missense_Mutation p.G1694E 0.45 tolerated(0.45) benign(0.019) TCGA-FR-A729-06 10 30317348 30317348 C T KIAA1462 Missense_Mutation p.E577K 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A729-06 10 30317525 30317525 C T KIAA1462 Missense_Mutation p.D518N 0.47 deleterious(0.01) possibly_damaging(0.888) TCGA-FR-A729-06 10 49763546 49763546 G A ARHGAP22 Missense_Mutation p.P95L 0.50 deleterious(0.05) possibly_damaging(0.507) TCGA-FR-A729-06 10 5246436 5246436 C T AKR1C4 Missense_Mutation p.H117Y 0.51 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 10 5255044 5255044 C T AKR1C4 Silent p.A256A 0.39 TCGA-FR-A729-06 10 55569042 55569042 C T PCDH15 Missense_Mutation p.E524K 0.50 deleterious_low_confidence(0) unknown(0) TCGA-FR-A729-06 10 55581662 55581662 C T PCDH15 Missense_Mutation p.E1944K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-FR-A729-06 10 55582847 55582847 C T PCDH15 Missense_Mutation p.D1549N 0.40 tolerated_low_confidence(0.06) benign(0.015) TCGA-FR-A729-06 10 55583099 55583099 A T PCDH15 Missense_Mutation p.F1465I 0.26 deleterious_low_confidence(0.03) benign(0.36) TCGA-FR-A729-06 10 5948520 5948520 C T FBXO18 Silent p.F277F 0.45 TCGA-FR-A729-06 10 61830966 61830966 C T ANK3 Missense_Mutation p.E3225K 0.47 benign(0.003) TCGA-FR-A729-06 10 61835312 61835312 G A ANK3 Missense_Mutation p.S1776F 0.41 probably_damaging(0.979) TCGA-FR-A729-06 10 61926616 61926616 C T ANK3 Silent p.T839T 0.54 TCGA-FR-A729-06 10 70968472 70968472 A G SUPV3L1 Missense_Mutation p.E681G 0.47 tolerated(0.06) benign(0.005) TCGA-FR-A729-06 10 73512751 73512751 C T C10orf54 Missense_Mutation p.E229K 0.38 deleterious(0.01) benign(0.068) TCGA-FR-A729-06 10 85992269 85992269 C T LRIT1 Missense_Mutation p.R429Q 0.39 tolerated(0.45) benign(0.002) TCGA-FR-A729-06 10 88419151 88419151 C T OPN4 Silent p.F253F 0.50 TCGA-FR-A729-06 10 89653814 89653814 C T PTEN Missense_Mutation p.P38S 0.32 deleterious(0) probably_damaging(0.991) TCGA-FR-A729-06 10 94223575 94223575 G A IDE Missense_Mutation p.R892C 0.43 deleterious(0) probably_damaging(0.949) TCGA-FR-A729-06 10 96802771 96802771 C T CYP2C8 Missense_Mutation p.R342K 0.48 tolerated(0.13) benign(0.391) TCGA-FR-A729-06 10 97373615 97373615 C T ALDH18A1 Missense_Mutation p.D603N 0.42 deleterious(0.05) probably_damaging(0.998) TCGA-FR-A729-06 11 101833916 101833916 C T KIAA1377 Missense_Mutation p.S717L 0.23 deleterious(0.02) benign(0.258) TCGA-FR-A729-06 11 104868172 104868172 C T CASP5 Missense_Mutation p.E395K 0.30 tolerated(0.8) benign(0.018) TCGA-FR-A729-06 11 108160419 108160419 C T ATM Missense_Mutation p.H1443Y 0.14 tolerated(0.05) benign(0.013) TCGA-FR-A729-06 11 110582896 110582896 G A ARHGAP20 Missense_Mutation p.S20F 0.19 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 11 111367923 111367923 G A BTG4 Intron 0.21 TCGA-FR-A729-06 11 113270770 113270770 G A ANKK1 Nonsense_Mutation p.W693* 0.43 TCGA-FR-A729-06 11 116633889 116633889 G A BUD13 Missense_Mutation p.S139F 0.32 deleterious(0.01) possibly_damaging(0.863) TCGA-FR-A729-06 11 118343109 118343109 C T KMT2A Missense_Mutation p.P412L 0.24 probably_damaging(0.991) TCGA-FR-A729-06 11 118849839 118849839 G A FOXR1 Silent p.V103V 0.25 TCGA-FR-A729-06 11 119054647 119054647 A T NLRX1 3'UTR 0.37 TCGA-FR-A729-06 11 123893842 123893842 C T OR10G9 Silent p.L41L 0.38 TCGA-FR-A729-06 11 124623742 124623742 G A ESAM Missense_Mutation p.P325S 0.53 tolerated(0.13) benign(0.017) TCGA-FR-A729-06 11 124743668 124743668 C T ROBO3 Missense_Mutation p.T565I 0.24 deleterious(0.04) benign(0.39) TCGA-FR-A729-06 11 125547791 125547791 C T ACRV1 Missense_Mutation p.E152K 0.44 deleterious(0.03) probably_damaging(0.986) TCGA-FR-A729-06 11 125875950 125875950 G A CDON Missense_Mutation p.P519S 0.24 tolerated(0.06) possibly_damaging(0.53) TCGA-FR-A729-06 11 129827745 129827745 G A PRDM10 Missense_Mutation p.R44C 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A729-06 11 134079291 134079291 G A NCAPD3 Silent p.I216I 0.35 TCGA-FR-A729-06 11 15197432 15197432 C T INSC Missense_Mutation p.P115S 0.36 tolerated(0.6) benign(0.003) TCGA-FR-A729-06 11 15243041 15243041 T C INSC Silent p.L327L 0.58 TCGA-FR-A729-06 11 17118741 17118741 G A PIK3C2A Missense_Mutation p.R1397C 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 11 1718690 1718690 C T KRTAP5-6 Missense_Mutation p.S72F 0.58 deleterious_low_confidence(0.05) unknown(0) TCGA-FR-A729-06 11 19735420 19735420 C T NAV2 Missense_Mutation p.S60L 0.63 deleterious_low_confidence(0) benign(0.128) TCGA-FR-A729-06 11 2441525 2441525 C T TRPM5 Silent p.G192G 0.46 TCGA-FR-A729-06 11 25004747 25004747 C T LUZP2 Missense_Mutation p.P225S 0.36 tolerated(0.36) benign(0.004) TCGA-FR-A729-06 11 27389970 27389970 G A LGR4 Missense_Mutation p.S767L 0.60 deleterious(0) probably_damaging(0.983) TCGA-FR-A729-06 11 27695658 27695658 G A BDNF Silent p.L58L 0.67 TCGA-FR-A729-06 11 31312235 31312235 C T DCDC1 Missense_Mutation p.D307N 0.53 tolerated(0.26) benign(0.082) TCGA-FR-A729-06 11 35827961 35827961 C T TRIM44 3'UTR 0.42 TCGA-FR-A729-06 11 36596166 36596166 T A RAG1 Missense_Mutation p.F438I 0.52 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-FR-A729-06 11 36596168 36596168 C T RAG1 Silent p.F438F 0.52 TCGA-FR-A729-06 11 4406958 4406958 G A TRIM21 Missense_Mutation p.P329S 0.56 tolerated(0.42) probably_damaging(1) TCGA-FR-A729-06 11 47470573 47470573 G A RAPSN 5'UTR 0.46 TCGA-FR-A729-06 11 47707602 47707602 C T AGBL2 Splice_Site p.X544_splice 0.59 TCGA-FR-A729-06 11 48510356 48510356 G A OR4A47 Silent p.R4R 0.41 TCGA-FR-A729-06 11 5080145 5080145 G A OR52E2 Missense_Mutation p.S238F 0.53 deleterious(0) probably_damaging(0.928) TCGA-FR-A729-06 11 5221421 5221421 G A OR51V1 Silent p.I170I 0.28 TCGA-FR-A729-06 11 5322391 5322391 C T OR51B4 Silent p.G262G 0.54 TCGA-FR-A729-06 11 55322496 55322496 G A OR4C15 Silent p.L238L 0.32 TCGA-FR-A729-06 11 55595525 55595525 C T OR5L2 Silent p.F277F 0.29 TCGA-FR-A729-06 11 5602936 5602936 C T OR52B6 Missense_Mutation p.S277F 0.45 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 11 56128132 56128132 C T OR8J1 Missense_Mutation p.S137F 0.26 deleterious(0) probably_damaging(0.966) TCGA-FR-A729-06 11 5730577 5730577 C T TRIM22 Missense_Mutation p.S399F 0.54 tolerated(0.07) possibly_damaging(0.464) TCGA-FR-A729-06 11 57367834 57367834 T C SERPING1 Silent p.L178L 0.39 TCGA-FR-A729-06 11 57414226 57414226 G A YPEL4 Silent p.S61S 0.18 TCGA-FR-A729-06 11 57958101 57958101 C T OR9Q2 Missense_Mutation p.L47F 0.67 tolerated(0.28) benign(0.001) TCGA-FR-A729-06 11 58170879 58170879 C T OR5B3 Missense_Mutation p.E2K 0.32 tolerated_low_confidence(0.13) benign(0.005) TCGA-FR-A729-06 11 58385341 58385341 C T ZFP91 3'UTR 0.21 TCGA-FR-A729-06 11 59596902 59596902 A T GIF 3'UTR 0.22 TCGA-FR-A729-06 11 6129944 6129944 A T OR56B4 Silent p.G312G 0.59 TCGA-FR-A729-06 11 62520907 62520907 C T ZBTB3 Missense_Mutation p.G127E 0.23 deleterious(0) probably_damaging(0.982) TCGA-FR-A729-06 11 62533728 62533728 C T POLR2G Missense_Mutation p.S162F 0.21 deleterious(0) possibly_damaging(0.891) TCGA-FR-A729-06 11 62760973 62760973 G A SLC22A8 Silent p.L484L 0.25 TCGA-FR-A729-06 11 62996843 62996843 G A SLC22A25 Silent p.P94P 0.22 TCGA-FR-A729-06 11 64138127 64138127 C T RPS6KA4 Missense_Mutation p.P684S 0.19 deleterious(0.05) possibly_damaging(0.53) TCGA-FR-A729-06 11 65116351 65116351 C T DPF2 Missense_Mutation p.R350C 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 11 65392927 65392927 G A PCNXL3 Silent p.E1027E 0.25 TCGA-FR-A729-06 11 66082791 66082791 G A CD248 Missense_Mutation p.P570S 0.42 tolerated(0.14) benign(0.011) TCGA-FR-A729-06 11 66262925 66262925 G A DPP3 Silent p.V514V 0.32 TCGA-FR-A729-06 11 66475185 66475185 G A SPTBN2 Silent p.D485D 0.09 TCGA-FR-A729-06 11 66636403 66636403 G A PC Silent p.F312F 0.17 TCGA-FR-A729-06 11 67186635 67186635 G A CARNS1 Missense_Mutation p.G258D 0.23 tolerated(0.42) benign(0.134) TCGA-FR-A729-06 11 67254624 67254624 G A AIP Missense_Mutation p.G83R 0.21 deleterious(0.03) probably_damaging(1) TCGA-FR-A729-06 11 67254625 67254625 G A AIP Missense_Mutation p.G83E 0.21 tolerated(0.06) probably_damaging(1) TCGA-FR-A729-06 11 72423517 72423517 C T ARAP1 Missense_Mutation p.E282K 0.31 tolerated(0.48) benign(0.031) TCGA-FR-A729-06 11 76954753 76954753 G A GDPD4 Silent p.F409F 0.29 TCGA-FR-A729-06 11 76980047 76980047 C T GDPD4 Silent p.G182G 0.43 TCGA-FR-A729-06 11 7960409 7960409 C T OR10A3 Missense_Mutation p.R220Q 0.52 tolerated(0.09) benign(0.027) TCGA-FR-A729-06 11 8148294 8148294 G A RIC3 Silent p.I194I 0.55 TCGA-FR-A729-06 11 89385731 89385731 C T FOLH1B RNA 0.17 TCGA-FR-A729-06 11 89531428 89531428 C T TRIM49 Missense_Mutation p.G410E 0.27 deleterious(0) possibly_damaging(0.816) TCGA-FR-A729-06 11 89774588 89774588 G A TRIM49C Missense_Mutation p.G410E 0.23 deleterious(0) probably_damaging(0.941) TCGA-FR-A729-06 12 100042202 100042202 G A FAM71C Missense_Mutation p.D84N 0.19 tolerated(0.22) possibly_damaging(0.467) TCGA-FR-A729-06 12 100444054 100444054 T A UHRF1BP1L Missense_Mutation p.I1204F 0.14 deleterious(0) benign(0.424) TCGA-FR-A729-06 12 103237528 103237528 G A PAH Silent p.L365L 0.22 TCGA-FR-A729-06 12 104096996 104096996 G A STAB2 Missense_Mutation p.G1262E 0.36 tolerated(0.21) benign(0.29) TCGA-FR-A729-06 12 104383212 104383212 T A GLT8D2 Missense_Mutation p.I342L 0.42 deleterious(0.04) benign(0.003) TCGA-FR-A729-06 12 10460655 10460655 C T KLRD1 5'UTR 0.19 TCGA-FR-A729-06 12 10525645 10525645 G A KLRK1 3'UTR 0.22 TCGA-FR-A729-06 12 108589971 108589971 G A WSCD2 Missense_Mutation p.R121Q 0.10 tolerated(0.09) benign(0.246) TCGA-FR-A729-06 12 108642072 108642072 C T WSCD2 Silent p.L550L 0.18 TCGA-FR-A729-06 12 112480966 112480966 G T NAA25 Missense_Mutation p.S767Y 0.09 deleterious(0.02) possibly_damaging(0.646) TCGA-FR-A729-06 12 114823345 114823345 G A TBX5 Missense_Mutation p.P231S 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 12 117461985 117461985 C T FBXW8 Silent p.I467I 0.24 TCGA-FR-A729-06 12 123265872 123265872 C T CCDC62 Missense_Mutation p.L131F 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A729-06 12 123345695 123345695 G A HIP1R Missense_Mutation p.G970S 0.21 tolerated(0.8) probably_damaging(0.999) TCGA-FR-A729-06 12 128899729 128899729 G A TMEM132C Missense_Mutation p.E180K 0.38 deleterious(0) probably_damaging(0.939) TCGA-FR-A729-06 12 130923021 130923021 C T RIMBP2 Silent p.G498G 0.31 TCGA-FR-A729-06 12 131488809 131488809 T C GPR133 Missense_Mutation p.I408T 0.12 deleterious(0) possibly_damaging(0.721) TCGA-FR-A729-06 12 132508355 132508355 C T EP400 Missense_Mutation p.S1575F 0.34 unknown(0) TCGA-FR-A729-06 12 132522245 132522245 C T EP400 Silent p.S1990S 0.15 TCGA-FR-A729-06 12 133226407 133226407 G A POLE Silent p.L1217L 0.14 TCGA-FR-A729-06 12 18841153 18841153 C T PLCZ1 Splice_Site p.X488_splice 0.22 TCGA-FR-A729-06 12 21028319 21028319 C T SLCO1B3 Missense_Mutation p.S293L 0.38 deleterious(0.04) benign(0.16) TCGA-FR-A729-06 12 21032487 21032487 C T SLCO1B3 Missense_Mutation p.S418F 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-FR-A729-06 12 21174426 21174426 C T SLCO1B7 Missense_Mutation p.P84S 0.24 tolerated(0.87) benign(0.02) TCGA-FR-A729-06 12 21926520 21926520 C T KCNJ8 Missense_Mutation p.E11K 0.31 tolerated(0.07) probably_damaging(0.956) TCGA-FR-A729-06 12 22837485 22837485 C T ETNK1 Silent p.F427F 0.16 TCGA-FR-A729-06 12 27113641 27113641 C T FGFR1OP2 Intron 0.50 TCGA-FR-A729-06 12 29669306 29669306 A C TMTC1 Nonsense_Mutation p.Y761* 0.27 TCGA-FR-A729-06 12 32875477 32875477 G A DNM1L Missense_Mutation p.S330N 0.33 tolerated(0.2) benign(0.073) TCGA-FR-A729-06 12 368925 368925 C T SLC6A13 Intron 0.22 TCGA-FR-A729-06 12 41337799 41337799 C T CNTN1 Missense_Mutation p.P504S 0.25 tolerated(0.2) benign(0.003) TCGA-FR-A729-06 12 46598124 46598124 G A SLC38A1 Missense_Mutation p.A261V 0.10 tolerated(0.32) benign(0.01) TCGA-FR-A729-06 12 4920478 4920478 G A KCNA6 Missense_Mutation p.G424D 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 12 49390542 49390542 C T DDN Missense_Mutation p.G706E 0.24 tolerated_low_confidence(0.05) benign(0.018) TCGA-FR-A729-06 12 49391140 49391140 G A DDN Missense_Mutation p.P507S 0.31 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-FR-A729-06 12 49425732 49425732 G A KMT2D Silent p.P4252P 0.33 TCGA-FR-A729-06 12 49434445 49434445 G A KMT2D Missense_Mutation p.R2370C 0.34 probably_damaging(0.989) TCGA-FR-A729-06 12 49437548 49437548 C T KMT2D Silent p.K1779K 0.37 TCGA-FR-A729-06 12 5021210 5021210 C T KCNA1 Silent p.F222F 0.31 TCGA-FR-A729-06 12 51281090 51281090 A T TMPRSS12 Nonsense_Mutation p.R281* 0.11 TCGA-FR-A729-06 12 51584114 51584114 G A POU6F1 Silent p.D274D 0.20 TCGA-FR-A729-06 12 51879655 51879655 C T SLC4A8 Missense_Mutation p.P753S 0.23 tolerated(0.07) possibly_damaging(0.686) TCGA-FR-A729-06 12 52695685 52695685 T A KRT86 5'UTR 0.34 TCGA-FR-A729-06 12 52789567 52789567 C T KRT82 Missense_Mutation p.E433K 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-FR-A729-06 12 52799660 52799660 G A KRT82 Silent p.F134F 0.31 TCGA-FR-A729-06 12 53162639 53162639 G A KRT76 Missense_Mutation p.S592F 0.36 tolerated_low_confidence(0.45) unknown(0) TCGA-FR-A729-06 12 53189603 53189603 G A KRT3 Missense_Mutation p.S75F 0.16 tolerated(0.74) unknown(0) TCGA-FR-A729-06 12 53343195 53343195 G A KRT18 Missense_Mutation p.E80K 0.33 tolerated(0.14) benign(0.045) TCGA-FR-A729-06 12 53461987 53461987 G A SPRYD3 Silent p.I265I 0.25 TCGA-FR-A729-06 12 55523632 55523632 G A OR9K2 Missense_Mutation p.G27E 0.31 tolerated(0.51) benign(0.003) TCGA-FR-A729-06 12 55714971 55714971 G A OR6C1 Missense_Mutation p.M196I 0.32 tolerated_low_confidence(0.56) benign(0.013) TCGA-FR-A729-06 12 5603794 5603794 G A NTF3 Silent p.R151R 0.33 TCGA-FR-A729-06 12 56359880 56359880 C T PMEL 5'Flank 0.09 TCGA-FR-A729-06 12 56363283 56363283 C T CDK2 Missense_Mutation p.P171S 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A729-06 12 57435269 57435269 C T MYO1A Missense_Mutation p.E371K 0.30 tolerated(0.78) benign(0.036) TCGA-FR-A729-06 12 57892364 57892364 C T MARS Missense_Mutation p.S350L 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-FR-A729-06 12 58017679 58017679 T A SLC26A10 Missense_Mutation p.F372I 0.42 deleterious(0) possibly_damaging(0.755) TCGA-FR-A729-06 12 6080775 6080775 G A VWF Missense_Mutation p.S2513F 0.25 tolerated(0.69) possibly_damaging(0.831) TCGA-FR-A729-06 12 6457912 6457912 G A SCNN1A Missense_Mutation p.S596F 0.30 deleterious(0.02) probably_damaging(0.929) TCGA-FR-A729-06 12 6657254 6657254 G A IFFO1 Nonsense_Mutation p.Q478* 0.15 TCGA-FR-A729-06 12 7021919 7021919 G A LRRC23 Missense_Mutation p.E262K 0.24 deleterious(0.04) possibly_damaging(0.566) TCGA-FR-A729-06 12 70918270 70918270 C T PTPRB Silent p.V2202V 0.17 TCGA-FR-A729-06 12 70953167 70953167 G A PTPRB Missense_Mutation p.S1557F 0.30 deleterious(0.01) possibly_damaging(0.715) TCGA-FR-A729-06 12 7242218 7242218 C T C1R Missense_Mutation p.G178D 0.44 deleterious(0.02) probably_damaging(1) TCGA-FR-A729-06 12 7356076 7356076 G T PEX5 Missense_Mutation p.A314S 0.43 tolerated(0.08) benign(0.14) TCGA-FR-A729-06 12 80623090 80623090 C T OTOGL Silent p.I172I 0.23 TCGA-FR-A729-06 12 80633150 80633150 C T OTOGL Missense_Mutation p.P319L 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 12 81101547 81101547 G A MYF6 Missense_Mutation p.G17R 0.19 deleterious(0) probably_damaging(0.935) TCGA-FR-A729-06 12 85439822 85439822 G A LRRIQ1 Missense_Mutation p.E121K 0.21 deleterious(0.01) possibly_damaging(0.849) TCGA-FR-A729-06 12 88478416 88478416 G A CEP290 Nonsense_Mutation p.Q1551* 0.17 TCGA-FR-A729-06 12 95912083 95912083 C T USP44 Missense_Mutation p.M662I 0.15 tolerated(0.43) benign(0.012) TCGA-FR-A729-06 12 97051676 97051676 G A C12orf55 Missense_Mutation p.G1706E 0.17 deleterious(0.02) benign(0.282) TCGA-FR-A729-06 13 103330646 103330646 C T TPP2 Missense_Mutation p.P1244S 0.11 tolerated(0.59) benign(0.008) TCGA-FR-A729-06 13 111080878 111080878 G A COL4A2 Missense_Mutation p.G142E 0.42 probably_damaging(1) TCGA-FR-A729-06 13 113473669 113473669 G T ATP11A Missense_Mutation p.G208C 0.39 deleterious(0) possibly_damaging(0.78) TCGA-FR-A729-06 13 20048172 20048172 G A TPTE2 Missense_Mutation p.L92F 0.22 tolerated(0.07) benign(0.009) TCGA-FR-A729-06 13 21006397 21006397 G A CRYL1 Silent p.V159V 0.20 TCGA-FR-A729-06 13 23904711 23904711 G A SACS Missense_Mutation p.P4435L 0.16 probably_damaging(0.997) TCGA-FR-A729-06 13 23904712 23904712 G A SACS Missense_Mutation p.P4435S 0.15 probably_damaging(0.996) TCGA-FR-A729-06 13 23909314 23909314 T C SACS Missense_Mutation p.N2901D 0.30 probably_damaging(0.991) TCGA-FR-A729-06 13 25378502 25378502 G A RNF17 Missense_Mutation p.E676K 0.18 tolerated(0.08) benign(0.002) TCGA-FR-A729-06 13 25828574 25828574 T C MTMR6 Splice_Site p.X366_splice 0.28 TCGA-FR-A729-06 13 26349021 26349021 G A ATP8A2 Missense_Mutation p.G868E 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 13 28498420 28498420 A T PDX1 Missense_Mutation p.E145V 0.38 deleterious(0) probably_damaging(0.991) TCGA-FR-A729-06 13 28903755 28903755 C T FLT1 Missense_Mutation p.G902R 0.13 deleterious(0.04) probably_damaging(0.979) TCGA-FR-A729-06 13 30071434 30071434 C T MTUS2 Silent p.F1223F 0.27 TCGA-FR-A729-06 13 32527126 32527126 G A EEF1DP3 RNA 0.27 TCGA-FR-A729-06 13 32747538 32747538 C T FRY Missense_Mutation p.S729L 0.41 tolerated(0.69) benign(0.017) TCGA-FR-A729-06 13 36180671 36180671 C T NBEA Missense_Mutation p.P2469S 0.19 deleterious(0.01) benign(0.045) TCGA-FR-A729-06 13 37679031 37679031 G A CSNK1A1L Silent p.I121I 0.38 TCGA-FR-A729-06 13 39425886 39425886 C T FREM2 Missense_Mutation p.S2269L 0.10 tolerated(0.14) benign(0.003) TCGA-FR-A729-06 13 42044672 42044672 C T RGCC 3'UTR 0.31 TCGA-FR-A729-06 13 43180935 43180935 G A TNFSF11 Missense_Mutation p.G279R 0.35 deleterious(0) probably_damaging(0.985) TCGA-FR-A729-06 13 47409637 47409637 C T HTR2A Missense_Mutation p.V251M 0.24 tolerated(0.15) probably_damaging(0.915) TCGA-FR-A729-06 13 52365341 52365341 A G DHRS12 Missense_Mutation p.F109S 0.40 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 13 52440151 52440151 G A CCDC70 Missense_Mutation p.E213K 0.25 tolerated(0.37) benign(0.075) TCGA-FR-A729-06 13 53624827 53624827 C T OLFM4 Missense_Mutation p.P485L 0.20 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 13 60453388 60453388 C T DIAPH3 Missense_Mutation p.G861E 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 13 72440157 72440157 G A DACH1 Missense_Mutation p.R251C 0.09 probably_damaging(1) TCGA-FR-A729-06 13 73333978 73333978 C T DIS3 Missense_Mutation p.M944I 0.24 tolerated(0.19) benign(0) TCGA-FR-A729-06 13 78335222 78335222 C G SLAIN1 Missense_Mutation p.S394R 0.25 deleterious(0) possibly_damaging(0.883) TCGA-FR-A729-06 13 84454179 84454179 C T SLITRK1 Silent p.V488V 0.47 TCGA-FR-A729-06 13 84455689 84455689 G A SLITRK1 5'UTR 0.25 TCGA-FR-A729-06 13 92797179 92797179 G A GPC5 Missense_Mutation p.D500N 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 13 95816692 95816692 G A ABCC4 Silent p.F705F 0.31 TCGA-FR-A729-06 13 96589306 96589306 G A UGGT2 Missense_Mutation p.P617S 0.11 tolerated(0.18) benign(0.01) TCGA-FR-A729-06 13 97484744 97484744 G A HS6ST3 Silent p.R236R 0.19 TCGA-FR-A729-06 13 97639869 97639869 G A OXGR1 Missense_Mutation p.P49S 0.38 deleterious(0.04) probably_damaging(0.953) TCGA-FR-A729-06 14 100563984 100563984 C T EVL Missense_Mutation p.S116F 0.12 deleterious(0) possibly_damaging(0.684) TCGA-FR-A729-06 14 101350952 101350952 G A RTL1 Silent p.P58P 0.43 TCGA-FR-A729-06 14 101489751 101489751 C T MIR411 RNA 0.49 TCGA-FR-A729-06 14 102549226 102549226 G A HSP90AA1 Intron 0.43 TCGA-FR-A729-06 14 103932015 103932015 C T MARK3 Missense_Mutation p.P221L 0.49 deleterious(0.01) probably_damaging(1) TCGA-FR-A729-06 14 104205347 104205347 T C PPP1R13B Missense_Mutation p.N869S 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A729-06 14 104643534 104643534 C T KIF26A Missense_Mutation p.S1470F 0.29 deleterious(0) benign(0.154) TCGA-FR-A729-06 14 105416161 105416161 G A AHNAK2 Missense_Mutation p.P1876L 0.13 possibly_damaging(0.851) TCGA-FR-A729-06 14 105420735 105420735 G A AHNAK2 Silent p.G351G 0.12 TCGA-FR-A729-06 14 105618374 105618374 G A JAG2 Missense_Mutation p.H314Y 0.41 tolerated(0.11) probably_damaging(0.995) TCGA-FR-A729-06 14 105931031 105931031 C T MTA1 Silent p.A455A 0.29 TCGA-FR-A729-06 14 105931032 105931032 C T MTA1 Missense_Mutation p.R456W 0.28 deleterious(0) probably_damaging(0.924) TCGA-FR-A729-06 14 106376273 106376273 G A IGHD6-6 Missense_Mutation p.S5L 0.43 probably_damaging(0.996) TCGA-FR-A729-06 14 106733250 106733250 T G IGHV1-24 Missense_Mutation p.K82T 0.37 deleterious(0.04) benign(0.033) TCGA-FR-A729-06 14 106780755 106780755 G A IGHV4-28 Silent p.L37L 0.19 TCGA-FR-A729-06 14 107078481 107078481 C T IGHV1-58 Silent p.Q81Q 0.35 TCGA-FR-A729-06 14 19553578 19553578 G A POTEG Missense_Mutation p.M54I 0.07 deleterious_low_confidence(0.03) benign(0.019) TCGA-FR-A729-06 14 19571373 19571373 G A POTEG Silent p.E384E 0.10 TCGA-FR-A729-06 14 20019999 20019999 C T POTEM Silent p.G74G 0.11 TCGA-FR-A729-06 14 20216284 20216284 G A OR4Q3 Missense_Mutation p.G233D 0.18 deleterious(0) possibly_damaging(0.857) TCGA-FR-A729-06 14 20404271 20404271 G A OR4K1 Nonsense_Mutation p.W149* 0.21 TCGA-FR-A729-06 14 20404272 20404272 G A OR4K1 Nonsense_Mutation p.W149* 0.21 TCGA-FR-A729-06 14 20502527 20502527 G A OR4K13 Missense_Mutation p.H131Y 0.12 deleterious(0.04) benign(0.021) TCGA-FR-A729-06 14 21500078 21500078 C T TPPP2 Missense_Mutation p.R119C 0.16 deleterious(0.01) benign(0.061) TCGA-FR-A729-06 14 22102951 22102951 G A OR10G2 Silent p.F16F 0.19 TCGA-FR-A729-06 14 22133740 22133740 C T OR4E2 Silent p.L148L 0.15 TCGA-FR-A729-06 14 22192091 22192091 G A TRAV3 5'UTR 0.48 TCGA-FR-A729-06 14 22356552 22356552 C T TRAV12-2 Silent p.F70F 0.44 TCGA-FR-A729-06 14 22386894 22386894 A G TRAV13-2 Silent p.Q101Q 0.29 TCGA-FR-A729-06 14 22447069 22447069 G A TRAV8-6 Missense_Mutation p.G17E 0.16 tolerated(0.19) benign(0.132) TCGA-FR-A729-06 14 22509219 22509219 G A TRAV20 Missense_Mutation p.G53R 0.36 tolerated(0.14) benign(0.013) TCGA-FR-A729-06 14 22933315 22933315 G A TRDC Intron 0.24 TCGA-FR-A729-06 14 24843036 24843036 C T NFATC4 Silent p.V628V 0.41 TCGA-FR-A729-06 14 28733737 28733737 C T BNIP3P1 RNA 0.60 TCGA-FR-A729-06 14 33015196 33015196 C T AKAP6 Missense_Mutation p.P446L 0.40 tolerated(0.08) benign(0.193) TCGA-FR-A729-06 14 45716568 45716568 G A MIS18BP1 5'UTR 0.15 TCGA-FR-A729-06 14 50935376 50935376 G A MAP4K5 Missense_Mutation p.P223S 0.52 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 14 51477153 51477153 C T TRIM9 Missense_Mutation p.M367I 0.11 tolerated(0.36) benign(0.006) TCGA-FR-A729-06 14 52923843 52923843 G A TXNDC16 Silent p.I556I 0.14 TCGA-FR-A729-06 14 52955153 52955153 G A TXNDC16 Missense_Mutation p.H346Y 0.12 tolerated(1) benign(0.001) TCGA-FR-A729-06 14 60213200 60213200 C T RTN1 Splice_Site p.X81_splice 0.42 TCGA-FR-A729-06 14 63174335 63174335 G A KCNH5 Missense_Mutation p.P953L 0.16 deleterious_low_confidence(0.01) benign(0.016) TCGA-FR-A729-06 14 63174542 63174542 G A KCNH5 Missense_Mutation p.P884L 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.632) TCGA-FR-A729-06 14 63175174 63175174 C T KCNH5 Splice_Site p.X674_splice 0.11 TCGA-FR-A729-06 14 64465683 64465683 C T SYNE2 Silent p.F1135F 0.12 TCGA-FR-A729-06 14 65240037 65240037 G A SPTB Silent p.F1693F 0.52 TCGA-FR-A729-06 14 67389499 67389499 C T GPHN Silent p.P191P 0.12 TCGA-FR-A729-06 14 68234521 68234521 G A ZFYVE26 Missense_Mutation p.S1897L 0.54 tolerated(0.14) benign(0.003) TCGA-FR-A729-06 14 69695608 69695608 C T EXD2 Missense_Mutation p.R137C 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 14 70634259 70634259 G A SLC8A3 Missense_Mutation p.S294F 0.15 deleterious(0.05) possibly_damaging(0.512) TCGA-FR-A729-06 14 70925335 70925335 G A ADAM21 Silent p.E373E 0.11 TCGA-FR-A729-06 14 71134369 71134369 G A TTC9 Silent p.K165K 0.47 TCGA-FR-A729-06 14 73238510 73238510 G A DPF3 Silent p.L42L 0.11 TCGA-FR-A729-06 14 73422337 73422337 C T DCAF4 Missense_Mutation p.S371L 0.12 deleterious(0.01) possibly_damaging(0.766) TCGA-FR-A729-06 14 77950890 77950890 G A ISM2 Missense_Mutation p.P135S 0.21 tolerated(0.06) unknown(0) TCGA-FR-A729-06 14 80669131 80669131 C A DIO2 Silent p.L277L 0.13 TCGA-FR-A729-06 14 91806302 91806302 C T CCDC88C Missense_Mutation p.E184K 0.19 deleterious(0.01) probably_damaging(1) TCGA-FR-A729-06 14 92280126 92280126 C T TC2N 5'UTR 0.44 TCGA-FR-A729-06 14 92436092 92436092 C T TRIP11 Silent p.L1955L 0.13 TCGA-FR-A729-06 14 93761099 93761099 G A BTBD7 Silent p.L89L 0.33 TCGA-FR-A729-06 14 94700960 94700960 C T PPP4R4 Nonsense_Mutation p.R229* 0.09 TCGA-FR-A729-06 14 94708237 94708237 C T PPP4R4 Silent p.I363I 0.16 TCGA-FR-A729-06 14 94756462 94756462 C T SERPINA10 Missense_Mutation p.E157K 0.18 deleterious(0.03) benign(0.033) TCGA-FR-A729-06 14 95579539 95579539 C A DICER1 Missense_Mutation p.D644Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 14 95670460 95670460 G A CLMN Missense_Mutation p.S409L 0.49 tolerated(0.17) benign(0.006) TCGA-FR-A729-06 14 96912916 96912916 C T AK7 Missense_Mutation p.S281F 0.42 deleterious(0.01) probably_damaging(0.954) TCGA-FR-A729-06 15 100230602 100230602 C T MEF2A Missense_Mutation p.P278L 0.20 deleterious(0) probably_damaging(0.991) TCGA-FR-A729-06 15 100695402 100695402 G A ADAMTS17 Silent p.D435D 0.18 TCGA-FR-A729-06 15 101152398 101152398 T G ASB7 5'UTR 0.26 TCGA-FR-A729-06 15 102261348 102261348 G A TARSL2 Nonsense_Mutation p.Q183* 0.31 TCGA-FR-A729-06 15 102261349 102261349 G A TARSL2 Silent p.Y182Y 0.32 TCGA-FR-A729-06 15 20169965 20169965 T C IGHV1OR15-9 Missense_Mutation p.S103G 0.53 tolerated(0.08) benign(0.236) TCGA-FR-A729-06 15 25486838 25486838 G A SNORD115-40 5'Flank 0.18 TCGA-FR-A729-06 15 25492391 25492391 A G SNORD115-40 3'Flank 0.43 TCGA-FR-A729-06 15 30664423 30664423 G A CHRFAM7A Silent p.P150P 0.22 TCGA-FR-A729-06 15 41099769 41099769 G A ZFYVE19 5'UTR 0.45 TCGA-FR-A729-06 15 42364537 42364537 G A PLA2G4D Silent p.N457N 0.25 TCGA-FR-A729-06 15 42434763 42434763 G A PLA2G4F Silent p.P764P 0.15 TCGA-FR-A729-06 15 43552329 43552329 G A TGM5 Silent p.I119I 0.22 TCGA-FR-A729-06 15 43692368 43692368 C T TUBGCP4 Silent p.R515R 0.30 TCGA-FR-A729-06 15 43692369 43692369 C T TUBGCP4 Silent p.L516L 0.30 TCGA-FR-A729-06 15 43815536 43815536 C T MAP1A Missense_Mutation p.T622I 0.29 benign(0.015) TCGA-FR-A729-06 15 43851102 43851102 G A PPIP5K1 Silent p.T1092T 0.15 TCGA-FR-A729-06 15 44944342 44944342 G A SPG11 Missense_Mutation p.S331F 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A729-06 15 48760697 48760697 G A FBN1 Silent p.I1498I 0.26 TCGA-FR-A729-06 15 50223447 50223447 C T ATP8B4 Missense_Mutation p.R504K 0.40 deleterious(0.02) benign(0.009) TCGA-FR-A729-06 15 50336873 50336873 G A ATP8B4 Missense_Mutation p.S73F 0.19 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 15 51756912 51756912 G A DMXL2 Nonsense_Mutation p.R2590* 0.22 TCGA-FR-A729-06 15 51757810 51757810 A C DMXL2 Missense_Mutation p.L2520R 0.35 tolerated(0.15) possibly_damaging(0.647) TCGA-FR-A729-06 15 52401910 52401910 C T BCL2L10 3'UTR 0.37 TCGA-FR-A729-06 15 52643586 52643586 G A MYO5A Silent p.T1238T 0.28 TCGA-FR-A729-06 15 57730591 57730591 C T CGNL1 Missense_Mutation p.R132C 0.26 tolerated(0.18) benign(0.001) TCGA-FR-A729-06 15 57835964 57835964 C T CGNL1 Missense_Mutation p.S1121F 0.17 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 15 63972886 63972886 G A HERC1 Silent p.T2105T 0.25 TCGA-FR-A729-06 15 65157819 65157819 C T PLEKHO2 Missense_Mutation p.P402L 0.32 deleterious(0.03) possibly_damaging(0.548) TCGA-FR-A729-06 15 65370232 65370232 C T KBTBD13 Missense_Mutation p.P360L 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 15 68643713 68643713 C T ITGA11 Silent p.R259R 0.30 TCGA-FR-A729-06 15 78921969 78921969 G A CHRNB4 Silent p.F226F 0.49 TCGA-FR-A729-06 15 81628975 81628975 C T TMC3 Silent p.K726K 0.13 TCGA-FR-A729-06 15 83440825 83440825 C T FSD2 Missense_Mutation p.E423K 0.16 deleterious(0) probably_damaging(0.911) TCGA-FR-A729-06 15 83932466 83932466 G A BNC1 Silent p.L513L 0.30 TCGA-FR-A729-06 15 84241374 84241374 C T SH3GL3 Missense_Mutation p.S130F 0.21 deleterious(0.03) probably_damaging(0.956) TCGA-FR-A729-06 15 86125300 86125300 A G AKAP13 Missense_Mutation p.K1334R 0.36 tolerated_low_confidence(0.07) benign(0.242) TCGA-FR-A729-06 15 91310192 91310192 T A BLM Missense_Mutation p.I749N 0.24 deleterious(0) probably_damaging(0.994) TCGA-FR-A729-06 15 92981780 92981780 C T ST8SIA2 Missense_Mutation p.S163L 0.07 probably_damaging(1) TCGA-FR-A729-06 16 11071081 11071081 G A CLEC16A Splice_Site p.X243_splice 0.22 TCGA-FR-A729-06 16 11114078 11114078 C A CLEC16A Missense_Mutation p.S444R 0.24 tolerated(0.51) benign(0.025) TCGA-FR-A729-06 16 11362884 11362884 G A TNP2 Missense_Mutation p.P79L 0.14 tolerated(0.31) possibly_damaging(0.908) TCGA-FR-A729-06 16 1271883 1271883 G A TPSG1 Missense_Mutation p.P291S 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-FR-A729-06 16 1399369 1399369 C T BAIAP3 3'UTR 0.37 TCGA-FR-A729-06 16 1399370 1399370 C T BAIAP3 3'UTR 0.38 TCGA-FR-A729-06 16 15729863 15729863 G A KIAA0430 Nonsense_Mutation p.Q161* 0.27 TCGA-FR-A729-06 16 15729864 15729864 G A KIAA0430 Silent p.L160L 0.27 TCGA-FR-A729-06 16 15820801 15820801 C T MYH11 Silent p.K1261K 0.31 TCGA-FR-A729-06 16 15853444 15853444 C T MYH11 Missense_Mutation p.E471K 0.09 probably_damaging(1) TCGA-FR-A729-06 16 2122858 2122858 C T TSC2 Silent p.G743G 0.24 TCGA-FR-A729-06 16 22325050 22325050 T G POLR3E Splice_Site p.X158_splice 0.20 TCGA-FR-A729-06 16 24942713 24942713 G A ARHGAP17 Missense_Mutation p.P636L 0.15 tolerated(0.67) possibly_damaging(0.713) TCGA-FR-A729-06 16 27492405 27492405 G A GTF3C1 Silent p.F1397F 0.17 TCGA-FR-A729-06 16 28506034 28506034 T G APOBR Missense_Mutation p.L11R 0.32 deleterious(0) probably_damaging(0.996) TCGA-FR-A729-06 16 3063354 3063354 G A CLDN9 5'UTR 0.24 TCGA-FR-A729-06 16 30750386 30750386 C T SRCAP Nonsense_Mutation p.R3009* 0.27 TCGA-FR-A729-06 16 31144261 31144261 C T PRSS8 Missense_Mutation p.E94K 0.36 tolerated(0.25) benign(0.018) TCGA-FR-A729-06 16 31391670 31391670 G A ITGAX Silent p.K1048K 0.28 TCGA-FR-A729-06 16 31497170 31497170 C T SLC5A2 Silent p.L142L 0.13 TCGA-FR-A729-06 16 32266246 32266246 C T TP53TG3D 3'UTR 0.14 TCGA-FR-A729-06 16 3432961 3432961 C T ZSCAN32 Missense_Mutation p.R450K 0.33 tolerated(1) benign(0.01) TCGA-FR-A729-06 16 48139080 48139080 G A ABCC12 Silent p.S881S 0.25 TCGA-FR-A729-06 16 48145757 48145757 T G ABCC12 Missense_Mutation p.H685P 0.29 deleterious(0) possibly_damaging(0.904) TCGA-FR-A729-06 16 4920249 4920249 C T UBN1 Silent p.V406V 0.23 TCGA-FR-A729-06 16 4920266 4920266 C T UBN1 Missense_Mutation p.A412V 0.30 deleterious(0.02) possibly_damaging(0.897) TCGA-FR-A729-06 16 49412449 49412449 G A C16orf78 Silent p.G113G 0.41 TCGA-FR-A729-06 16 50324395 50324395 G A ADCY7 Missense_Mutation p.G67S 0.09 tolerated(1) benign(0.05) TCGA-FR-A729-06 16 50340994 50340994 G A ADCY7 Missense_Mutation p.D596N 0.19 tolerated(0.11) benign(0.032) TCGA-FR-A729-06 16 53403294 53403294 G A RP11-44F14.1 RNA 0.38 TCGA-FR-A729-06 16 53504563 53504563 T G RBL2 Silent p.L838L 0.23 TCGA-FR-A729-06 16 56362671 56362671 C T GNAO1 Silent p.S144S 0.15 TCGA-FR-A729-06 16 56601723 56601723 G A MT4 Nonsense_Mutation p.W31* 0.17 TCGA-FR-A729-06 16 57004944 57004944 G A CETP Splice_Site p.X176_splice 0.24 TCGA-FR-A729-06 16 57295823 57295823 G A PLLP Missense_Mutation p.P99S 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 16 57765144 57765144 G A CCDC135 Missense_Mutation p.G867R 0.20 tolerated(0.06) benign(0.006) TCGA-FR-A729-06 16 57765145 57765145 G A CCDC135 Missense_Mutation p.G867E 0.22 deleterious(0.02) benign(0.104) TCGA-FR-A729-06 16 61687984 61687984 G A CDH8 Missense_Mutation p.T643I 0.24 deleterious(0) probably_damaging(0.987) TCGA-FR-A729-06 16 61689437 61689437 G A CDH8 Missense_Mutation p.L615F 0.43 tolerated(0.18) probably_damaging(0.991) TCGA-FR-A729-06 16 61689464 61689464 G A CDH8 Nonsense_Mutation p.Q606* 0.18 TCGA-FR-A729-06 16 61761010 61761010 T C CDH8 Silent p.G508G 0.21 TCGA-FR-A729-06 16 66946309 66946309 C T CDH16 Missense_Mutation p.D462N 0.17 tolerated(0.11) benign(0.232) TCGA-FR-A729-06 16 66946314 66946314 G A CDH16 Missense_Mutation p.P460L 0.11 deleterious(0) probably_damaging(0.994) TCGA-FR-A729-06 16 68901033 68901033 C T TANGO6 Missense_Mutation p.R302W 0.13 deleterious(0) probably_damaging(0.987) TCGA-FR-A729-06 16 70975702 70975702 T A HYDIN Silent p.G2230G 0.06 TCGA-FR-A729-06 16 71212878 71212878 G A HYDIN Missense_Mutation p.P112S 0.48 probably_damaging(0.986) TCGA-FR-A729-06 16 72142164 72142164 C T DHX38 Silent p.F1001F 0.14 TCGA-FR-A729-06 16 72188116 72188116 T G PMFBP1 Missense_Mutation p.E136D 0.19 deleterious(0.05) benign(0.134) TCGA-FR-A729-06 16 74716629 74716629 C T MLKL Silent p.R292R 0.35 TCGA-FR-A729-06 16 75674161 75674161 G A KARS Silent p.I131I 0.10 TCGA-FR-A729-06 16 76501369 76501369 C T CNTNAP4 Missense_Mutation p.S462F 0.45 tolerated(0.07) benign(0.125) TCGA-FR-A729-06 16 79633644 79633644 C T MAF Silent p.G52G 0.26 TCGA-FR-A729-06 16 81253758 81253758 C T PKD1L2 Nonsense_Mutation p.W73* 0.25 TCGA-FR-A729-06 16 81411234 81411234 C T GAN 3'UTR 0.33 TCGA-FR-A729-06 16 814700 814700 C T MSLN Silent p.L118L 0.28 TCGA-FR-A729-06 16 817004 817004 C T MSLN Missense_Mutation p.S506F 0.12 deleterious(0) possibly_damaging(0.811) TCGA-FR-A729-06 16 817005 817005 C T MSLN Silent p.S506S 0.11 TCGA-FR-A729-06 16 84215016 84215016 G A TAF1C Missense_Mutation p.S387L 0.29 deleterious(0) benign(0.281) TCGA-FR-A729-06 16 87636771 87636771 T A JPH3 Missense_Mutation p.F7I 0.09 deleterious(0) possibly_damaging(0.739) TCGA-FR-A729-06 16 88061122 88061122 C T BANP Missense_Mutation p.S302F 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A729-06 16 8866765 8866765 C T ABAT Silent p.I315I 0.07 TCGA-FR-A729-06 16 89857845 89857845 G A FANCA Missense_Mutation p.P442L 0.24 deleterious(0) possibly_damaging(0.713) TCGA-FR-A729-06 16 9858152 9858152 C T GRIN2A Silent p.K1083K 0.28 TCGA-FR-A729-06 16 9862707 9862707 C T GRIN2A Splice_Site p.X865_splice 0.09 TCGA-FR-A729-06 16 9892267 9892267 C T GRIN2A Silent p.R741R 0.16 TCGA-FR-A729-06 16 9916163 9916163 T A GRIN2A Missense_Mutation p.N709I 0.37 deleterious(0) probably_damaging(0.936) TCGA-FR-A729-06 17 11648137 11648137 G A DNAH9 Silent p.R2045R 0.56 TCGA-FR-A729-06 17 18022540 18022540 C T MYO15A Silent p.L142L 0.46 TCGA-FR-A729-06 17 18542524 18542524 C T TBC1D28 Silent p.E54E 0.21 TCGA-FR-A729-06 17 21731352 21731352 C T UBBP4 Intron 0.45 TCGA-FR-A729-06 17 25924383 25924383 G A KSR1 Silent p.P326P 0.31 TCGA-FR-A729-06 17 30980867 30980867 G A MYO1D Silent p.V863V 0.56 TCGA-FR-A729-06 17 3181876 3181876 C T OR3A2 Silent p.G118G 0.35 TCGA-FR-A729-06 17 34074872 34074872 G A GAS2L2 Silent p.S276S 0.60 TCGA-FR-A729-06 17 37826579 37826579 T G PNMT Silent p.L262L 0.62 TCGA-FR-A729-06 17 37866686 37866686 C T ERBB2 Missense_Mutation p.P285S 0.17 deleterious(0.02) benign(0.005) TCGA-FR-A729-06 17 39411678 39411679 - ACCTGCTGCAGGACC KRTAP9-9 Nonsense_Mutation p.C14delins* 0.10 TCGA-FR-A729-06 17 39521549 39521549 C T KRT33B Missense_Mutation p.E252K 0.43 deleterious(0.01) benign(0.377) TCGA-FR-A729-06 17 39681201 39681201 C T KRT19 Missense_Mutation p.G185D 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A729-06 17 39767633 39767633 C T KRT16 Silent p.K245K 0.38 TCGA-FR-A729-06 17 40091527 40091527 C T TTC25 RNA 0.47 TCGA-FR-A729-06 17 40344595 40344595 G C GHDC Missense_Mutation p.L185V 0.38 deleterious(0.04) probably_damaging(0.983) TCGA-FR-A729-06 17 42475157 42475157 G A GPATCH8 Missense_Mutation p.P1430S 0.64 deleterious(0.01) unknown(0) TCGA-FR-A729-06 17 4389498 4389498 C T SPNS3 Intron 0.62 TCGA-FR-A729-06 17 45885975 45885975 G A OSBPL7 Silent p.I783I 0.26 TCGA-FR-A729-06 17 46919129 46919129 C T CALCOCO2 Silent p.F20F 0.33 TCGA-FR-A729-06 17 48694857 48694857 G A CACNA1G Missense_Mutation p.E1694K 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-FR-A729-06 17 4926817 4926817 G A KIF1C Missense_Mutation p.G895R 0.19 tolerated_low_confidence(0.24) benign(0.165) TCGA-FR-A729-06 17 57109427 57109427 G A TRIM37 Missense_Mutation p.S593F 0.19 deleterious_low_confidence(0.01) benign(0.027) TCGA-FR-A729-06 17 60002452 60002452 A G INTS2 Missense_Mutation p.L109P 0.19 tolerated(0.34) possibly_damaging(0.583) TCGA-FR-A729-06 17 65905795 65905795 T G BPTF Missense_Mutation p.D970E 0.38 benign(0.015) TCGA-FR-A729-06 17 6978866 6978866 C T CLEC10A Intron 0.59 TCGA-FR-A729-06 17 7004892 7004892 G A ASGR2 3'UTR 0.42 TCGA-FR-A729-06 17 7097168 7097168 G A DLG4 Missense_Mutation p.S556L 0.41 tolerated(0.16) benign(0.007) TCGA-FR-A729-06 17 71433918 71433918 C T SDK2 Silent p.A320A 0.59 TCGA-FR-A729-06 17 72874555 72874555 C T FADS6 Missense_Mutation p.E320K 0.47 deleterious(0.01) possibly_damaging(0.881) TCGA-FR-A729-06 17 7406806 7406806 G A POLR2A Missense_Mutation p.E1011K 0.38 benign(0.058) TCGA-FR-A729-06 17 74308964 74308964 G A PRPSAP1 Missense_Mutation p.S329F 0.16 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 17 7578175 7578175 A G TP53 Splice_Site p.X224_splice 0.53 TCGA-FR-A729-06 17 77709080 77709080 G A ENPP7 Missense_Mutation p.R213K 0.18 tolerated(1) benign(0.009) TCGA-FR-A729-06 17 77755684 77755684 C T CBX2 Intron 0.48 TCGA-FR-A729-06 17 78322032 78322032 C T RNF213 Silent p.F3299F 0.14 TCGA-FR-A729-06 17 7909932 7909932 C T GUCY2D Silent p.S426S 0.50 TCGA-FR-A729-06 17 80319891 80319891 C T TEX19 5'UTR 0.45 TCGA-FR-A729-06 17 9583647 9583647 C T USP43 Nonsense_Mutation p.Q357* 0.52 TCGA-FR-A729-06 17 9632257 9632257 C T USP43 Missense_Mutation p.H1108Y 0.25 deleterious(0.01) probably_damaging(0.916) TCGA-FR-A729-06 18 14105011 14105011 G A ZNF519 Missense_Mutation p.H510Y 0.35 deleterious(0.01) probably_damaging(0.927) TCGA-FR-A729-06 18 14513661 14513661 C T POTEC Silent p.E511E 0.25 TCGA-FR-A729-06 18 22007928 22007928 T G IMPACT Missense_Mutation p.C28G 0.26 tolerated(0.11) possibly_damaging(0.497) TCGA-FR-A729-06 18 28588081 28588081 C T DSC3 Missense_Mutation p.E522K 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 18 28983388 28983388 G A DSG4 Missense_Mutation p.G476E 0.12 tolerated(0.1) benign(0.015) TCGA-FR-A729-06 18 32431866 32431866 G A DTNA Silent p.L415L 0.30 TCGA-FR-A729-06 18 34839047 34839047 C T CELF4 Intron 0.30 TCGA-FR-A729-06 18 3814219 3814219 G A DLGAP1 Missense_Mutation p.P338S 0.26 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 18 47800068 47800068 G A MBD1 Missense_Mutation p.P438S 0.42 tolerated_low_confidence(0.27) benign(0.012) TCGA-FR-A729-06 18 61322747 61322747 C T SERPINB3 3'UTR 0.33 TCGA-FR-A729-06 18 7024431 7024431 C T LAMA1 Missense_Mutation p.E813K 0.42 tolerated(0.15) benign(0.033) TCGA-FR-A729-06 19 10475308 10475308 C T TYK2 Missense_Mutation p.G450E 0.50 deleterious(0) probably_damaging(0.949) TCGA-FR-A729-06 19 10677902 10677902 G A CDKN2D Silent p.I111I 0.19 TCGA-FR-A729-06 19 11215911 11215911 C T LDLR Missense_Mutation p.S110F 0.23 deleterious(0.01) possibly_damaging(0.761) TCGA-FR-A729-06 19 11470574 11470574 C T DKFZP761J1410 Silent p.I86I 0.29 TCGA-FR-A729-06 19 11545643 11545643 G A CCDC151 Silent p.P65P 0.11 TCGA-FR-A729-06 19 12090117 12090117 C T ZNF763 3'UTR 0.10 TCGA-FR-A729-06 19 12429955 12429955 G A ZNF563 Missense_Mutation p.S295F 0.18 tolerated(0.12) benign(0.072) TCGA-FR-A729-06 19 12574852 12574852 G A ZNF709 Silent p.S628S 0.13 TCGA-FR-A729-06 19 13041077 13041077 C T FARSA Missense_Mutation p.E155K 0.10 tolerated(0.83) benign(0.005) TCGA-FR-A729-06 19 13395908 13395908 G A CACNA1A Silent p.S1222S 0.18 TCGA-FR-A729-06 19 14024281 14024281 C T CC2D1A Missense_Mutation p.P193L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 19 14037681 14037681 C T CC2D1A Silent p.S707S 0.08 TCGA-FR-A729-06 19 15290935 15290935 G A NOTCH3 Missense_Mutation p.P1092L 0.44 deleterious(0.01) benign(0.228) TCGA-FR-A729-06 19 16025417 16025417 G A CYP4F11 Missense_Mutation p.P437S 0.21 tolerated(0.06) possibly_damaging(0.86) TCGA-FR-A729-06 19 16025418 16025418 G A CYP4F11 Silent p.D436D 0.21 TCGA-FR-A729-06 19 16059904 16059904 C T OR10H4 Silent p.F29F 0.43 TCGA-FR-A729-06 19 16178501 16178501 G A TPM4 Missense_Mutation p.E23K 0.23 deleterious(0.01) possibly_damaging(0.832) TCGA-FR-A729-06 19 16268379 16268379 C T HSH2D 3'Flank 0.37 TCGA-FR-A729-06 19 16339733 16339733 C T AP1M1 Silent p.S359S 0.44 TCGA-FR-A729-06 19 17013505 17013505 C T CPAMD8 Missense_Mutation p.D1594N 0.27 tolerated(0.1) benign(0.103) TCGA-FR-A729-06 19 17014430 17014430 G A CPAMD8 Missense_Mutation p.P1518S 0.30 deleterious(0.04) probably_damaging(0.966) TCGA-FR-A729-06 19 17115177 17115177 G A CPAMD8 Silent p.F240F 0.22 TCGA-FR-A729-06 19 17373620 17373620 G A USHBP1 Missense_Mutation p.S128F 0.45 deleterious(0) probably_damaging(0.982) TCGA-FR-A729-06 19 17892557 17892557 C T FCHO1 Missense_Mutation p.S622F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 19 17892592 17892592 G A FCHO1 Missense_Mutation p.E634K 0.46 deleterious(0) probably_damaging(0.998) TCGA-FR-A729-06 19 18232577 18232577 C T MAST3 Missense_Mutation p.P52S 0.11 tolerated_low_confidence(0.56) possibly_damaging(0.87) TCGA-FR-A729-06 19 18377907 18377907 G A KIAA1683 Missense_Mutation p.S148F 0.11 deleterious(0) probably_damaging(0.956) TCGA-FR-A729-06 19 19105080 19105080 G A SUGP2 3'UTR 0.39 TCGA-FR-A729-06 19 19653278 19653278 C T CILP2 Silent p.S229S 0.19 TCGA-FR-A729-06 19 19758440 19758440 G A ATP13A1 Missense_Mutation p.P921S 0.21 tolerated(0.55) benign(0) TCGA-FR-A729-06 19 20117010 20117010 A T ZNF682 Missense_Mutation p.F434Y 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-FR-A729-06 19 21719182 21719182 G A ZNF429 Silent p.E109E 0.33 TCGA-FR-A729-06 19 22271883 22271883 C T ZNF257 Missense_Mutation p.S444L 0.44 deleterious(0.01) possibly_damaging(0.887) TCGA-FR-A729-06 19 23542399 23542399 G A ZNF91 Missense_Mutation p.H1128Y 0.40 deleterious(0.03) probably_damaging(0.939) TCGA-FR-A729-06 19 23927212 23927212 G A ZNF681 Silent p.H380H 0.35 TCGA-FR-A729-06 19 3612113 3612113 G A CACTIN Silent p.F695F 0.39 TCGA-FR-A729-06 19 36303396 36303396 G A PRODH2 Silent p.S155S 0.62 TCGA-FR-A729-06 19 38189321 38189321 G A ZNF607 Missense_Mutation p.R571C 0.44 tolerated(0.21) probably_damaging(0.964) TCGA-FR-A729-06 19 38202514 38202514 G A ZNF607 Silent p.S2S 0.54 TCGA-FR-A729-06 19 39788934 39788934 A G IFNL1 Missense_Mutation p.K159E 0.57 deleterious(0.01) benign(0.111) TCGA-FR-A729-06 19 39805230 39805230 G A LRFN1 Silent p.F249F 0.36 TCGA-FR-A729-06 19 40430452 40430452 C T FCGBP Silent p.T497T 0.50 TCGA-FR-A729-06 19 41271082 41271082 C T SNRPA 3'UTR 0.54 TCGA-FR-A729-06 19 42492255 42492255 G A ATP1A3 Missense_Mutation p.R77W 0.37 deleterious(0) probably_damaging(0.949) TCGA-FR-A729-06 19 42599754 42599754 C T POU2F2 Silent p.K299K 0.36 TCGA-FR-A729-06 19 42814065 42814065 C A PRR19 Missense_Mutation p.P110Q 0.15 deleterious(0.04) probably_damaging(0.919) TCGA-FR-A729-06 19 42819368 42819368 C T TMEM145 Silent p.L178L 0.63 TCGA-FR-A729-06 19 44793065 44793065 G A ZNF235 Missense_Mutation p.P175S 0.52 tolerated(0.3) benign(0.075) TCGA-FR-A729-06 19 45406309 45406309 C T TOMM40 Silent p.I323I 0.33 TCGA-FR-A729-06 19 45815153 45815153 G A CKM Silent p.F169F 0.42 TCGA-FR-A729-06 19 45918120 45918120 C T ERCC1 Missense_Mutation p.R234Q 0.44 tolerated(0.29) benign(0.01) TCGA-FR-A729-06 19 49142619 49142619 G A CA11 Silent p.C246C 0.22 TCGA-FR-A729-06 19 50001235 50001235 C A RPS11 Nonsense_Mutation p.Y95* 0.13 TCGA-FR-A729-06 19 51729066 51729066 C T CD33 Silent p.T142T 0.26 TCGA-FR-A729-06 19 51729288 51729288 C T CD33 Silent p.F216F 0.39 TCGA-FR-A729-06 19 52942007 52942007 C T ZNF534 Missense_Mutation p.H445Y 0.61 deleterious(0) possibly_damaging(0.7) TCGA-FR-A729-06 19 53085749 53085749 C T ZNF701 Missense_Mutation p.S212L 0.51 tolerated(0.12) benign(0.024) TCGA-FR-A729-06 19 54600294 54600294 C T OSCAR Silent p.R80R 0.63 TCGA-FR-A729-06 19 54823829 54823829 G A LILRA5 Silent p.A22A 0.41 TCGA-FR-A729-06 19 55086944 55086944 T C LILRA2 Missense_Mutation p.Y293H 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 19 55652288 55652288 C T TNNT1 Missense_Mutation p.R117K 0.61 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 19 56243965 56243965 G A NLRP9 Missense_Mutation p.S411F 0.53 tolerated(0.09) benign(0.032) TCGA-FR-A729-06 19 56538662 56538662 G A NLRP5 Missense_Mutation p.E355K 0.55 tolerated(0.07) probably_damaging(0.97) TCGA-FR-A729-06 19 57666645 57666645 C T DUXA Silent p.E178E 0.57 TCGA-FR-A729-06 19 5831231 5831231 G A FUT6 3'UTR 0.40 TCGA-FR-A729-06 19 58579550 58579550 C T ZNF135 Silent p.I590I 0.58 TCGA-FR-A729-06 19 58579578 58579578 A C ZNF135 Missense_Mutation p.K600Q 0.62 deleterious(0) benign(0.44) TCGA-FR-A729-06 19 5866846 5866846 G A FUT5 Silent p.F297F 0.19 TCGA-FR-A729-06 19 603616 603616 C T HCN2 Silent p.F235F 0.36 TCGA-FR-A729-06 19 6427214 6427214 G A SLC25A41 Silent p.P280P 0.22 TCGA-FR-A729-06 19 6495090 6495090 G A TUBB4A 3'UTR 0.40 TCGA-FR-A729-06 19 6495091 6495091 G A TUBB4A 3'UTR 0.40 TCGA-FR-A729-06 19 6836497 6836497 G A VAV1 Missense_Mutation p.G611E 0.27 tolerated(0.55) benign(0.042) TCGA-FR-A729-06 19 6903879 6903879 G A EMR1 Silent p.G240G 0.42 TCGA-FR-A729-06 19 7707408 7707408 C T STXBP2 Silent p.I296I 0.27 TCGA-FR-A729-06 19 8933414 8933414 G A ZNF558 Intron 0.17 TCGA-FR-A729-06 19 9046593 9046593 G A MUC16 Missense_Mutation p.P11680S 0.29 benign(0) TCGA-FR-A729-06 19 9046608 9046608 G A MUC16 Missense_Mutation p.P11675S 0.25 benign(0) TCGA-FR-A729-06 19 9056653 9056653 C T MUC16 Missense_Mutation p.D10265N 0.44 benign(0.007) TCGA-FR-A729-06 19 9056713 9056713 A G MUC16 Missense_Mutation p.S10245P 0.18 benign(0.145) TCGA-FR-A729-06 19 9058383 9058383 C T MUC16 Missense_Mutation p.G9688E 0.15 unknown(0) TCGA-FR-A729-06 19 9060020 9060020 G A MUC16 Silent p.S9142S 0.42 TCGA-FR-A729-06 19 9061899 9061899 G T MUC16 Missense_Mutation p.T8516K 0.24 unknown(0) TCGA-FR-A729-06 19 9069045 9069045 G A MUC16 Missense_Mutation p.S6134L 0.46 unknown(0) TCGA-FR-A729-06 19 9070737 9070737 G A MUC16 Missense_Mutation p.T5570I 0.27 unknown(0) TCGA-FR-A729-06 19 9074749 9074749 C T MUC16 Missense_Mutation p.E4233K 0.17 unknown(0) TCGA-FR-A729-06 19 9084471 9084471 G A MUC16 Silent p.S2448S 0.17 TCGA-FR-A729-06 19 9086405 9086405 C T MUC16 Missense_Mutation p.E1804K 0.37 unknown(0) TCGA-FR-A729-06 19 9086437 9086437 G A MUC16 Missense_Mutation p.A1793V 0.39 unknown(0) TCGA-FR-A729-06 19 9406536 9406536 G A ZNF699 Missense_Mutation p.S515F 0.23 tolerated(0.06) probably_damaging(0.988) TCGA-FR-A729-06 19 9453859 9453859 C T ZNF559 3'UTR 0.56 TCGA-FR-A729-06 19 9524084 9524084 G A ZNF266 Missense_Mutation p.S506L 0.11 tolerated(0.64) benign(0.159) TCGA-FR-A729-06 1 103352572 103352572 G A COL11A1 Missense_Mutation p.S1550F 0.51 unknown(0) TCGA-FR-A729-06 1 103388924 103388924 C T COL11A1 Missense_Mutation p.E1208K 0.60 unknown(0) TCGA-FR-A729-06 1 110564388 110564388 C T AHCYL1 3'UTR 0.17 TCGA-FR-A729-06 1 110564389 110564389 C T AHCYL1 3'UTR 0.18 TCGA-FR-A729-06 1 110766176 110766176 C T KCNC4 Silent p.I423I 0.56 TCGA-FR-A729-06 1 112045992 112045992 G A ADORA3 5'UTR 0.77 TCGA-FR-A729-06 1 11254622 11254622 G A ANGPTL7 Silent p.G259G 0.18 TCGA-FR-A729-06 1 12907459 12907459 G A HNRNPCL1 Silent p.S228S 0.35 TCGA-FR-A729-06 1 12907967 12907967 T C HNRNPCL1 Missense_Mutation p.K59R 0.05 deleterious(0) benign(0.027) TCGA-FR-A729-06 1 143767743 143767743 A T PPIAL4G Missense_Mutation p.F36I 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-FR-A729-06 1 146658815 146658815 C T FMO5 Silent p.E422E 0.45 TCGA-FR-A729-06 1 147092731 147092731 C T BCL9 Missense_Mutation p.P924S 0.12 deleterious(0) probably_damaging(0.979) TCGA-FR-A729-06 1 151112558 151112558 G A SEMA6C Missense_Mutation p.P43S 0.46 tolerated(0.31) possibly_damaging(0.803) TCGA-FR-A729-06 1 152086421 152086421 G A TCHH Missense_Mutation p.R46W 0.39 unknown(0) TCGA-FR-A729-06 1 152186066 152186066 C T HRNR Missense_Mutation p.S2680N 0.09 unknown(0) TCGA-FR-A729-06 1 152277587 152277587 C T FLG Missense_Mutation p.E3259K 0.15 unknown(0) TCGA-FR-A729-06 1 152732638 152732638 G A KPRP Missense_Mutation p.G192S 0.47 tolerated(0.28) benign(0.022) TCGA-FR-A729-06 1 153283084 153283084 T G PGLYRP3 Intron 0.12 TCGA-FR-A729-06 1 153662365 153662365 C T NPR1 Silent p.R947R 0.44 TCGA-FR-A729-06 1 153924557 153924557 G A CRTC2 Missense_Mutation p.H312Y 0.09 deleterious(0.03) possibly_damaging(0.903) TCGA-FR-A729-06 1 155581366 155581366 G A MSTO1 Nonsense_Mutation p.W131* 0.28 TCGA-FR-A729-06 1 156020950 156020950 G A UBQLN4 Silent p.P143P 0.57 TCGA-FR-A729-06 1 156304549 156304549 C T CCT3 Missense_Mutation p.M54I 0.22 tolerated(0.12) benign(0.092) TCGA-FR-A729-06 1 156811540 156811540 C T INSRR Silent p.K1148K 0.16 TCGA-FR-A729-06 1 156841505 156841505 G A NTRK1 Missense_Mutation p.D270N 0.16 tolerated(0.48) benign(0.007) TCGA-FR-A729-06 1 158326187 158326187 G A CD1E Intron 0.27 TCGA-FR-A729-06 1 158617443 158617443 T A SPTA1 Missense_Mutation p.Q1261L 0.40 tolerated(0.59) benign(0.015) TCGA-FR-A729-06 1 158632523 158632523 C T SPTA1 Silent p.E811E 0.20 TCGA-FR-A729-06 1 158687875 158687875 C T OR6K3 Missense_Mutation p.E11K 0.14 deleterious(0.02) benign(0.178) TCGA-FR-A729-06 1 158725336 158725336 C T OR6K6 Missense_Mutation p.S244F 0.40 deleterious(0.03) probably_damaging(0.952) TCGA-FR-A729-06 1 159023463 159023463 G A IFI16 Silent p.P686P 0.36 TCGA-FR-A729-06 1 159683802 159683802 G A CRP Missense_Mutation p.S63L 0.36 tolerated(0.41) benign(0.002) TCGA-FR-A729-06 1 159899733 159899733 G A IGSF9 Silent p.F699F 0.50 TCGA-FR-A729-06 1 16095026 16095026 C T FBLIM1 Missense_Mutation p.P148S 0.47 tolerated(0.77) benign(0.047) TCGA-FR-A729-06 1 16458646 16458646 G A EPHA2 Silent p.L746L 0.26 TCGA-FR-A729-06 1 166927071 166927071 G A ILDR2 Missense_Mutation p.S105L 0.47 deleterious(0) probably_damaging(0.996) TCGA-FR-A729-06 1 169512297 169512297 C T F5 Silent p.L677L 0.17 TCGA-FR-A729-06 1 170967603 170967603 C T MROH9 Intron 0.18 TCGA-FR-A729-06 1 173486714 173486714 C T SLC9C2 Missense_Mutation p.E957K 0.40 deleterious(0.03) probably_damaging(1) TCGA-FR-A729-06 1 174417282 174417282 C T GPR52 Silent p.I11I 0.18 TCGA-FR-A729-06 1 176525795 176525795 G A PAPPA2 Missense_Mutation p.E113K 0.13 tolerated_low_confidence(0.59) benign(0.002) TCGA-FR-A729-06 1 179604986 179604986 C T TDRD5 Missense_Mutation p.S495L 0.38 deleterious(0) probably_damaging(0.973) TCGA-FR-A729-06 1 179631277 179631277 G A TDRD5 Silent p.V787V 0.13 TCGA-FR-A729-06 1 18149728 18149728 G A ACTL8 Nonsense_Mutation p.W75* 0.65 TCGA-FR-A729-06 1 18554492 18554492 C T IGSF21 Silent p.I57I 0.73 TCGA-FR-A729-06 1 19166726 19166726 G A TAS1R2 Silent p.T629T 0.63 TCGA-FR-A729-06 1 19202875 19202875 G A ALDH4A1 Silent p.S424S 0.60 TCGA-FR-A729-06 1 196645177 196645177 G A CFH Missense_Mutation p.D137N 0.12 tolerated(0.2) probably_damaging(0.957) TCGA-FR-A729-06 1 196857222 196857222 C T CFHR4 5'UTR 0.43 TCGA-FR-A729-06 1 196953187 196953187 G A CFHR5 Missense_Mutation p.G117E 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 1 197032068 197032068 C T F13B Missense_Mutation p.G62S 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 1 198608409 198608409 A C PTPRC Missense_Mutation p.Y4S 0.12 deleterious_low_confidence(0.04) benign(0.051) TCGA-FR-A729-06 1 201288992 201288992 C T PKP1 Silent p.A427A 0.16 TCGA-FR-A729-06 1 204210893 204210893 G A PLEKHA6 Missense_Mutation p.P741L 0.06 tolerated(0.05) benign(0.002) TCGA-FR-A729-06 1 20517478 20517478 C T UBXN10 Silent p.L142L 0.56 TCGA-FR-A729-06 1 205492336 205492336 C T CDK18 Missense_Mutation p.S14F 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A729-06 1 205892739 205892739 C T SLC26A9 Missense_Mutation p.R500Q 0.08 deleterious(0.03) possibly_damaging(0.842) TCGA-FR-A729-06 1 206239489 206239489 C T C1orf186 Missense_Mutation p.E137K 0.11 deleterious(0.04) probably_damaging(0.961) TCGA-FR-A729-06 1 207648369 207648369 C T CR2 Missense_Mutation p.P842S 0.11 tolerated(0.55) benign(0.037) TCGA-FR-A729-06 1 209782374 209782374 G A CAMK1G Missense_Mutation p.E229K 0.12 tolerated(0.17) possibly_damaging(0.777) TCGA-FR-A729-06 1 210003488 210003488 A C DIEXF Missense_Mutation p.Q48P 0.12 deleterious(0.02) benign(0.209) TCGA-FR-A729-06 1 211263919 211263919 C T KCNH1 Missense_Mutation p.D142N 0.19 deleterious(0.01) benign(0.358) TCGA-FR-A729-06 1 211748996 211748996 C T SLC30A1 Missense_Mutation p.E420K 0.49 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 1 212218005 212218005 C T DTL Missense_Mutation p.P61L 0.08 tolerated(0.06) benign(0.108) TCGA-FR-A729-06 1 212792421 212792421 A G ATF3 Intron 0.46 TCGA-FR-A729-06 1 22176593 22176593 G A HSPG2 Nonsense_Mutation p.Q2463* 0.12 TCGA-FR-A729-06 1 22200966 22200966 C T HSPG2 Missense_Mutation p.D1197N 0.14 benign(0.122) TCGA-FR-A729-06 1 223396907 223396907 G A SUSD4 Silent p.L376L 0.56 TCGA-FR-A729-06 1 227171328 227171328 C T ADCK3 Missense_Mutation p.P386S 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 1 228461493 228461493 G A OBSCN Silent p.E2095E 0.08 TCGA-FR-A729-06 1 228482482 228482482 C T OBSCN Silent p.A4228A 0.16 TCGA-FR-A729-06 1 23110906 23110906 G A EPHB2 Missense_Mutation p.D50N 0.27 deleterious(0.02) possibly_damaging(0.534) TCGA-FR-A729-06 1 235969680 235969680 G A LYST Missense_Mutation p.S919L 0.16 tolerated_low_confidence(0.12) benign(0.003) TCGA-FR-A729-06 1 236898958 236898958 G A ACTN2 Missense_Mutation p.D241N 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 1 237802351 237802351 G A RYR2 Missense_Mutation p.R2322K 0.39 possibly_damaging(0.585) TCGA-FR-A729-06 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.56 probably_damaging(0.992) TCGA-FR-A729-06 1 240070863 240070863 G C CHRM3 Missense_Mutation p.G38R 0.10 tolerated_low_confidence(0.11) benign(0.138) TCGA-FR-A729-06 1 2426367 2426367 G A PLCH2 Missense_Mutation p.G551R 0.50 tolerated(0.13) benign(0.007) TCGA-FR-A729-06 1 247599340 247599340 C T NLRP3 Missense_Mutation p.S856F 0.10 deleterious(0.02) benign(0.013) TCGA-FR-A729-06 1 247726895 247726895 G A GCSAML Silent p.Q31Q 0.50 TCGA-FR-A729-06 1 247737445 247737445 G A GCSAML Missense_Mutation p.E57K 0.45 deleterious(0.01) benign(0.139) TCGA-FR-A729-06 1 247769001 247769001 C T OR2G3 Silent p.T38T 0.39 TCGA-FR-A729-06 1 248201520 248201520 T G OR2L2 5'UTR 0.11 TCGA-FR-A729-06 1 248201521 248201521 C T OR2L2 5'UTR 0.09 TCGA-FR-A729-06 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.18 deleterious(0.02) benign(0.33) TCGA-FR-A729-06 1 248436292 248436292 G A OR2T33 Silent p.F275F 0.43 TCGA-FR-A729-06 1 248458581 248458581 G A OR2T12 Silent p.F100F 0.09 TCGA-FR-A729-06 1 248487377 248487377 G A OR2M7 Missense_Mutation p.S165F 0.09 deleterious(0.02) benign(0.156) TCGA-FR-A729-06 1 25697032 25697032 C T RHCE Splice_Site p.X385_splice 0.43 TCGA-FR-A729-06 1 32740355 32740355 C T LCK Silent p.G41G 0.40 TCGA-FR-A729-06 1 3335249 3335249 C T PRDM16 Silent p.F960F 0.51 TCGA-FR-A729-06 1 35260270 35260270 G A GJA4 Missense_Mutation p.M152I 0.52 deleterious(0) benign(0.164) TCGA-FR-A729-06 1 36505566 36505566 C T AGO3 Missense_Mutation p.S673L 0.47 deleterious(0.03) probably_damaging(0.976) TCGA-FR-A729-06 1 38425817 38425817 G A SF3A3 Missense_Mutation p.S468L 0.20 tolerated(0.37) benign(0.005) TCGA-FR-A729-06 1 39903492 39903492 T A MACF1 Missense_Mutation p.L3952H 0.61 probably_damaging(0.987) TCGA-FR-A729-06 1 43396333 43396333 G A SLC2A1 Silent p.H160H 0.74 TCGA-FR-A729-06 1 47499028 47499028 G A CYP4X1 Silent p.V160V 0.51 TCGA-FR-A729-06 1 47614273 47614273 G A CYP4A22 Splice_Site p.X455_splice 0.47 TCGA-FR-A729-06 1 53558453 53558453 G A SLC1A7 Silent p.F268F 0.15 TCGA-FR-A729-06 1 60505761 60505761 G A C1orf87 Missense_Mutation p.S192F 0.62 deleterious(0.03) possibly_damaging(0.873) TCGA-FR-A729-06 1 63063429 63063429 G A ANGPTL3 Silent p.T64T 0.17 TCGA-FR-A729-06 1 6634935 6634935 C T TAS1R1 Missense_Mutation p.S248F 0.21 tolerated(0.63) possibly_damaging(0.493) TCGA-FR-A729-06 1 70505239 70505239 T C LRRC7 Silent p.S1206S 0.57 TCGA-FR-A729-06 1 71546729 71546729 A C ZRANB2 5'UTR 0.24 TCGA-FR-A729-06 1 75037997 75037997 C T C1orf173 Missense_Mutation p.E1133K 0.53 tolerated(0.66) benign(0.121) TCGA-FR-A729-06 1 76877761 76877761 G A ST6GALNAC3 Silent p.V94V 0.64 TCGA-FR-A729-06 1 77510219 77510219 C T ST6GALNAC5 Missense_Mutation p.R198W 0.59 possibly_damaging(0.79) TCGA-FR-A729-06 1 7980871 7980871 C T TNFRSF9 3'UTR 0.26 TCGA-FR-A729-06 1 85555806 85555806 C T WDR63 Missense_Mutation p.P250S 0.49 deleterious(0) possibly_damaging(0.78) TCGA-FR-A729-06 1 85742046 85742046 G A BCL10 5'UTR 0.16 TCGA-FR-A729-06 1 8924078 8924078 G A ENO1 Silent p.I313I 0.11 TCGA-FR-A729-06 1 8925419 8925419 G A ENO1 Missense_Mutation p.P264S 0.68 deleterious_low_confidence(0.03) benign(0.075) TCGA-FR-A729-06 1 90049038 90049038 C T LRRC8B Missense_Mutation p.P277S 0.28 tolerated(0.82) benign(0.005) TCGA-FR-A729-06 1 90058731 90058731 C T LRRC8B 3'UTR 0.24 TCGA-FR-A729-06 1 90399818 90399818 C T LRRC8D Silent p.F397F 0.59 TCGA-FR-A729-06 1 92941587 92941587 C T GFI1 Silent p.%3D 0.23 TCGA-FR-A729-06 1 94335434 94335434 G A DNTTIP2 Silent p.F748F 0.12 TCGA-FR-A729-06 20 10280051 10280051 C T SNAP25 Silent p.I181I 0.35 TCGA-FR-A729-06 20 14306077 14306080 AATG - FLRT3 3'UTR 0.48 TCGA-FR-A729-06 20 20601133 20601133 C T RALGAPA2 Missense_Mutation p.G459R 0.31 tolerated(0.45) benign(0.025) TCGA-FR-A729-06 20 23966755 23966755 C T GGTLC1 Missense_Mutation p.E88K 0.26 tolerated(0.85) benign(0.003) TCGA-FR-A729-06 20 29632656 29632656 A G FRG1B Silent p.K157K 0.05 TCGA-FR-A729-06 20 29891187 29891187 A G DEFB116 Missense_Mutation p.M46T 0.35 tolerated(0.8) benign(0.001) TCGA-FR-A729-06 20 30662484 30662484 A G HCK Missense_Mutation p.S130G 0.28 deleterious(0.02) probably_damaging(0.96) TCGA-FR-A729-06 20 31827616 31827616 G A BPIFA1 Missense_Mutation p.V110I 0.32 tolerated(0.88) benign(0.019) TCGA-FR-A729-06 20 3210326 3210326 T C SLC4A11 Missense_Mutation p.N572S 0.31 tolerated(0.16) possibly_damaging(0.476) TCGA-FR-A729-06 20 33875226 33875226 G A FAM83C Silent p.L452L 0.19 TCGA-FR-A729-06 20 35128636 35128636 C G DLGAP4 Missense_Mutation p.R709G 0.37 tolerated(0.25) benign(0.006) TCGA-FR-A729-06 20 35128862 35128862 C T DLGAP4 Missense_Mutation p.S784F 0.30 tolerated(0.15) possibly_damaging(0.575) TCGA-FR-A729-06 20 35580097 35580097 G A SAMHD1 5'UTR 0.32 TCGA-FR-A729-06 20 36147531 36147531 G A BLCAP Missense_Mutation p.P16S 0.46 tolerated(0.08) probably_damaging(1) TCGA-FR-A729-06 20 37464802 37464802 G A PPP1R16B Silent p.R78R 0.19 TCGA-FR-A729-06 20 3765721 3765721 G A CENPB Silent p.G470G 0.42 TCGA-FR-A729-06 20 4228984 4228984 G A ADRA1D Silent p.I207I 0.25 TCGA-FR-A729-06 20 43132634 43132634 G A SERINC3 Missense_Mutation p.R293C 0.29 deleterious(0) benign(0.082) TCGA-FR-A729-06 20 43547843 43547843 G A PABPC1L Silent p.K221K 0.26 TCGA-FR-A729-06 20 43995822 43995822 C T SYS1 3'UTR 0.15 TCGA-FR-A729-06 20 44669257 44669257 A T SLC12A5 Intron 0.38 TCGA-FR-A729-06 20 45865209 45865209 A T ZMYND8 Missense_Mutation p.L860Q 0.32 tolerated(0.07) probably_damaging(1) TCGA-FR-A729-06 20 5294602 5294602 G A PROKR2 Silent p.S138S 0.28 TCGA-FR-A729-06 20 57767049 57767049 G A ZNF831 Silent p.K325K 0.27 TCGA-FR-A729-06 20 58571460 58571460 C G CDH26 Intron 0.38 TCGA-FR-A729-06 20 6021890 6021890 C T LRRN4 Nonsense_Mutation p.W667* 0.42 TCGA-FR-A729-06 20 60318753 60318753 G A CDH4 Missense_Mutation p.V102M 0.25 deleterious(0) probably_damaging(0.987) TCGA-FR-A729-06 20 62729471 62729471 C T OPRL1 Missense_Mutation p.P184S 0.32 tolerated(0.09) probably_damaging(0.993) TCGA-FR-A729-06 20 62867925 62867925 G A MYT1 Missense_Mutation p.R972K 0.31 possibly_damaging(0.838) TCGA-FR-A729-06 20 9546931 9546931 G A PAK7 Missense_Mutation p.S364L 0.40 tolerated(0.37) benign(0) TCGA-FR-A729-06 21 10906879 10906879 C T TPTE 3'UTR 0.14 TCGA-FR-A729-06 21 11039377 11039377 C T BAGE2 RNA 0.06 TCGA-FR-A729-06 21 15882719 15882719 C T SAMSN1 Missense_Mutation p.G226D 0.42 tolerated(0.2) benign(0.169) TCGA-FR-A729-06 21 17163930 17163930 C T USP25 Missense_Mutation p.P168S 0.35 deleterious(0) possibly_damaging(0.876) TCGA-FR-A729-06 21 31045315 31045315 T G GRIK1 Missense_Mutation p.E238D 0.43 tolerated(0.54) benign(0.004) TCGA-FR-A729-06 21 32639298 32639298 G A TIAM1 Intron 0.42 TCGA-FR-A729-06 21 38884229 38884229 C T DYRK1A Missense_Mutation p.P563S 0.38 tolerated_low_confidence(0.15) benign(0.025) TCGA-FR-A729-06 21 40783659 40783659 C T LCA5L Missense_Mutation p.E349K 0.46 tolerated(0.27) benign(0.311) TCGA-FR-A729-06 21 41452109 41452109 C T DSCAM Missense_Mutation p.E1464K 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A729-06 21 41684173 41684173 C T DSCAM Missense_Mutation p.D633N 0.12 tolerated(0.06) probably_damaging(0.992) TCGA-FR-A729-06 21 44324166 44324166 C T NDUFV3 Silent p.P348P 0.49 TCGA-FR-A729-06 21 46011401 46011401 G A KRTAP10-6 Missense_Mutation p.S322F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 21 46032103 46032103 G A KRTAP10-8 Missense_Mutation p.R29Q 0.20 deleterious(0.03) benign(0.134) TCGA-FR-A729-06 22 17071765 17071765 C T CCT8L2 3'UTR 0.34 TCGA-FR-A729-06 22 17119563 17119563 C T TPTEP1 RNA 0.22 TCGA-FR-A729-06 22 18031821 18031821 G A CECR2 Silent p.L1440L 0.24 TCGA-FR-A729-06 22 21119152 21119152 G A PI4KA Silent p.F887F 0.32 TCGA-FR-A729-06 22 21134426 21134426 G A SERPIND1 Missense_Mutation p.D276N 0.29 deleterious(0.01) benign(0.35) TCGA-FR-A729-06 22 21384232 21384232 G A SLC7A4 Missense_Mutation p.P464L 0.13 tolerated(0.17) benign(0.078) TCGA-FR-A729-06 22 22599239 22599239 C T VPREB1 Missense_Mutation p.P5L 0.30 tolerated(0.07) benign(0.092) TCGA-FR-A729-06 22 25024265 25024265 C T GGT1 Silent p.F491F 0.19 TCGA-FR-A729-06 22 30766580 30766580 G A CCDC157 Missense_Mutation p.G229E 0.31 deleterious(0.01) probably_damaging(1) TCGA-FR-A729-06 22 30782083 30782083 G A RNF215 Silent p.I159I 0.19 TCGA-FR-A729-06 22 30951923 30951923 G A GAL3ST1 Missense_Mutation p.R97C 0.22 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 22 31532891 31532891 C T PLA2G3 Intron 0.42 TCGA-FR-A729-06 22 32097666 32097666 G A PRR14L Missense_Mutation p.P2028L 0.35 deleterious(0) benign(0.043) TCGA-FR-A729-06 22 32162570 32162570 G A DEPDC5 Splice_Site p.X94_splice 0.20 TCGA-FR-A729-06 22 32162571 32162571 G A DEPDC5 Missense_Mutation p.D94N 0.21 deleterious(0) possibly_damaging(0.69) TCGA-FR-A729-06 22 36177682 36177682 G A RBFOX2 Missense_Mutation p.R192C 0.24 probably_damaging(1) TCGA-FR-A729-06 22 36661446 36661446 C T APOL1 Silent p.I204I 0.36 TCGA-FR-A729-06 22 36714305 36714305 G A MYH9 Missense_Mutation p.P392S 0.27 probably_damaging(0.993) TCGA-FR-A729-06 22 37425492 37425492 G A MPST Silent p.V297V 0.30 TCGA-FR-A729-06 22 37528457 37528457 G A IL2RB Silent p.S290S 0.20 TCGA-FR-A729-06 22 37602513 37602513 C T SSTR3 3'UTR 0.28 TCGA-FR-A729-06 22 37603787 37603787 G A SSTR3 Missense_Mutation p.S19F 0.14 deleterious(0) possibly_damaging(0.665) TCGA-FR-A729-06 22 38120897 38120897 C T TRIOBP Silent p.P778P 0.37 TCGA-FR-A729-06 22 38229066 38229066 G A ANKRD54 Nonsense_Mutation p.R207* 0.35 TCGA-FR-A729-06 22 38620948 38620948 G A TMEM184B Missense_Mutation p.P276S 0.21 tolerated(0.12) benign(0.199) TCGA-FR-A729-06 22 39357490 39357490 G A APOBEC3A Silent p.R91R 0.27 TCGA-FR-A729-06 22 39357491 39357491 G A APOBEC3A Missense_Mutation p.V92I 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-FR-A729-06 22 40816867 40816867 G A MKL1 Silent p.L289L 0.23 TCGA-FR-A729-06 22 41625550 41625550 G T L3MBTL2 Missense_Mutation p.R632I 0.21 deleterious(0.02) benign(0.054) TCGA-FR-A729-06 22 42141909 42141909 G A MEI1 Missense_Mutation p.S520N 0.12 tolerated(0.16) benign(0.003) TCGA-FR-A729-06 22 42290847 42290847 C T SREBF2 Nonsense_Mutation p.Q801* 0.30 TCGA-FR-A729-06 22 45728477 45728477 C T FAM118A Nonsense_Mutation p.Q275* 0.29 TCGA-FR-A729-06 22 46654665 46654665 G A PKDREJ Missense_Mutation p.P1519S 0.30 tolerated(0.5) benign(0.002) TCGA-FR-A729-06 22 46657583 46657583 C T PKDREJ Missense_Mutation p.G546E 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 22 46684411 46684411 C T TTC38 Silent p.F336F 0.32 TCGA-FR-A729-06 22 51007752 51007752 G C CPT1B 3'UTR 0.15 TCGA-FR-A729-06 2 102957287 102957287 G A IL1RL1 Silent p.K203K 0.26 TCGA-FR-A729-06 2 103067330 103067330 C T IL18RAP Silent p.F411F 0.12 TCGA-FR-A729-06 2 108478061 108478061 G A RGPD4 Silent p.R690R 0.24 TCGA-FR-A729-06 2 108487709 108487709 G A RGPD4 Silent p.G1083G 0.09 TCGA-FR-A729-06 2 108609573 108609573 C T SLC5A7 Silent p.F146F 0.43 TCGA-FR-A729-06 2 108625062 108625062 C T SLC5A7 Missense_Mutation p.S346L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 2 108627273 108627273 G A SLC5A7 Missense_Mutation p.D567N 0.36 tolerated_low_confidence(0.14) benign(0.001) TCGA-FR-A729-06 2 108994831 108994831 G A SULT1C4 Missense_Mutation p.G13E 0.40 tolerated(1) benign(0.001) TCGA-FR-A729-06 2 109539897 109539897 C T EDAR Silent p.L123L 0.48 TCGA-FR-A729-06 2 109964133 109964133 C T SH3RF3 Missense_Mutation p.P193S 0.45 tolerated(0.08) benign(0.003) TCGA-FR-A729-06 2 111556607 111556607 C T ACOXL Silent p.I159I 0.14 TCGA-FR-A729-06 2 112767548 112767548 C T MERTK Nonsense_Mutation p.Q662* 0.10 TCGA-FR-A729-06 2 114258137 114258137 C T FOXD4L1 3'UTR 0.28 TCGA-FR-A729-06 2 116497345 116497345 G A DPP10 Nonsense_Mutation p.W247* 0.31 TCGA-FR-A729-06 2 121727984 121727984 C T GLI2 Silent p.F287F 0.48 TCGA-FR-A729-06 2 121727985 121727985 C T GLI2 Missense_Mutation p.P288S 0.47 tolerated(0.11) probably_damaging(0.998) TCGA-FR-A729-06 2 128177520 128177520 T G PROC Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.983) TCGA-FR-A729-06 2 130877771 130877771 G A POTEF Silent p.F106F 0.17 TCGA-FR-A729-06 2 130897600 130897600 G A CCDC74B Missense_Mutation p.P316S 0.17 tolerated(0.05) probably_damaging(0.921) TCGA-FR-A729-06 2 131976126 131976126 G A POTEE Missense_Mutation p.D51N 0.39 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-FR-A729-06 2 132020967 132020967 G A POTEE Missense_Mutation p.E647K 0.34 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-FR-A729-06 2 136594656 136594656 G A LCT Silent p.F28F 0.12 TCGA-FR-A729-06 2 136872691 136872691 G A CXCR4 Silent p.I273I 0.17 TCGA-FR-A729-06 2 138169354 138169354 A G THSD7B Silent p.K957K 0.22 TCGA-FR-A729-06 2 141072638 141072638 C T LRP1B Missense_Mutation p.G4224E 0.20 probably_damaging(0.931) TCGA-FR-A729-06 2 141459296 141459296 C T LRP1B Missense_Mutation p.E2141K 0.43 benign(0.292) TCGA-FR-A729-06 2 153378505 153378505 G A FMNL2 Missense_Mutation p.D56N 0.37 probably_damaging(0.996) TCGA-FR-A729-06 2 155099390 155099390 C T GALNT13 Missense_Mutation p.P220S 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-FR-A729-06 2 159033039 159033039 T C CCDC148 Silent p.E541E 0.45 TCGA-FR-A729-06 2 162274735 162274735 G A TBR1 Missense_Mutation p.D291N 0.11 deleterious(0) benign(0.096) TCGA-FR-A729-06 2 163302566 163302566 G A KCNH7 Missense_Mutation p.P506S 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 2 163374466 163374466 G A KCNH7 Silent p.P222P 0.13 TCGA-FR-A729-06 2 165555938 165555938 G A COBLL1 Missense_Mutation p.S550L 0.12 tolerated(0.68) benign(0.02) TCGA-FR-A729-06 2 166019277 166019277 G A SCN3A Silent p.I252I 0.50 TCGA-FR-A729-06 2 166246307 166246307 G A SCN2A Silent p.G1997G 0.09 TCGA-FR-A729-06 2 167141026 167141026 G A SCN9A Silent p.L637L 0.18 TCGA-FR-A729-06 2 167163548 167163548 G A SCN9A Missense_Mutation p.R99C 0.23 deleterious(0) probably_damaging(0.976) TCGA-FR-A729-06 2 168105355 168105355 A G XIRP2 Missense_Mutation p.S2485G 0.43 benign(0.009) TCGA-FR-A729-06 2 171854276 171854276 C T TLK1 Silent p.K654K 0.43 TCGA-FR-A729-06 2 179397101 179397101 C T TTN Silent p.R34747R 0.60 TCGA-FR-A729-06 2 179410650 179410650 C T TTN Silent p.R31771R 0.47 TCGA-FR-A729-06 2 179496978 179496978 C T TTN Missense_Mutation p.G14548E 0.62 TCGA-FR-A729-06 2 179599447 179599447 T G TTN Missense_Mutation p.E5068D 0.59 TCGA-FR-A729-06 2 182388960 182388960 C T ITGA4 Silent p.I744I 0.72 TCGA-FR-A729-06 2 187618680 187618680 C T FAM171B Missense_Mutation p.R306W 0.50 tolerated(0.06) benign(0) TCGA-FR-A729-06 2 187627001 187627001 T A FAM171B Silent p.T644T 0.46 TCGA-FR-A729-06 2 196681480 196681480 G A DNAH7 Silent p.S3211S 0.45 TCGA-FR-A729-06 2 197298137 197298137 G A HECW2 Missense_Mutation p.S4L 0.48 tolerated_low_confidence(0.06) benign(0.162) TCGA-FR-A729-06 2 197559809 197559809 G A CCDC150 Missense_Mutation p.E517K 0.51 tolerated(0.08) benign(0.035) TCGA-FR-A729-06 2 198949852 198949852 C T PLCL1 Silent p.I537I 0.44 TCGA-FR-A729-06 2 202074214 202074214 C T CASP10 Silent p.S448S 0.54 TCGA-FR-A729-06 2 209036792 209036792 C T C2orf80 Missense_Mutation p.R125Q 0.19 tolerated(0.36) benign(0.021) TCGA-FR-A729-06 2 21256332 21256332 C T APOB Silent p.Q321Q 0.54 TCGA-FR-A729-06 2 219538350 219538350 C T STK36 Silent p.V29V 0.69 TCGA-FR-A729-06 2 220333429 220333429 C T SPEG Missense_Mutation p.P1091L 0.50 probably_damaging(1) TCGA-FR-A729-06 2 220353509 220353509 G A SPEG Missense_Mutation p.G2679E 0.17 probably_damaging(1) TCGA-FR-A729-06 2 220440180 220440180 G A INHA Missense_Mutation p.D345N 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 2 225639731 225639731 G A DOCK10 Silent p.F1968F 0.54 TCGA-FR-A729-06 2 228158016 228158016 G A COL4A3 Missense_Mutation p.G1107E 0.38 unknown(0) TCGA-FR-A729-06 2 228846410 228846410 G A SPHKAP 3'UTR 0.72 TCGA-FR-A729-06 2 232390126 232390126 G A NMUR1 Silent p.V303V 0.56 TCGA-FR-A729-06 2 233785295 233785295 C T NGEF Missense_Mutation p.G176E 0.07 tolerated(0.2) benign(0.149) TCGA-FR-A729-06 2 234365890 234365890 C T DGKD Silent p.L832L 0.15 TCGA-FR-A729-06 2 234858664 234858664 G A TRPM8 Silent p.V338V 0.43 TCGA-FR-A729-06 2 237300918 237300918 C T IQCA1 Missense_Mutation p.R429Q 0.42 deleterious(0.01) possibly_damaging(0.773) TCGA-FR-A729-06 2 237405877 237405877 C T IQCA1 Missense_Mutation p.E89K 0.47 deleterious(0) benign(0.317) TCGA-FR-A729-06 2 238280370 238280370 C T COL6A3 Intron 0.59 TCGA-FR-A729-06 2 238668721 238668721 C T LRRFIP1 Silent p.I254I 0.55 TCGA-FR-A729-06 2 241537442 241537442 C T CAPN10 Silent p.P627P 0.52 TCGA-FR-A729-06 2 241631418 241631418 C T AQP12A Missense_Mutation p.P30S 0.27 tolerated(0.45) benign(0.02) TCGA-FR-A729-06 2 241658546 241658546 G A KIF1A Silent p.F1697F 0.19 TCGA-FR-A729-06 2 241831025 241831025 G A C2orf54 Missense_Mutation p.P224S 0.54 deleterious(0.02) probably_damaging(0.91) TCGA-FR-A729-06 2 242051689 242051689 C T PASK Missense_Mutation p.E1174K 0.09 deleterious(0) possibly_damaging(0.808) TCGA-FR-A729-06 2 242065912 242065912 G A PASK Silent p.D806D 0.48 TCGA-FR-A729-06 2 32865334 32865334 C T TTC27 Intron 0.39 TCGA-FR-A729-06 2 39046230 39046230 G A DHX57 Silent p.F1116F 0.56 TCGA-FR-A729-06 2 68415778 68415778 G A PPP3R1 Missense_Mutation p.L30F 0.10 deleterious(0) probably_damaging(0.98) TCGA-FR-A729-06 2 69565590 69565590 G A GFPT1 Silent p.F437F 0.52 TCGA-FR-A729-06 2 71039714 71039714 C T CLEC4F Missense_Mutation p.M468I 0.53 deleterious(0.01) benign(0.021) TCGA-FR-A729-06 2 85892816 85892816 C T SFTPB Silent p.R177R 0.59 TCGA-FR-A729-06 2 85991225 85991225 C T ATOH8 Missense_Mutation p.H294Y 0.52 deleterious(0) benign(0.328) TCGA-FR-A729-06 2 89476119 89476119 G A IGKV2-24 Missense_Mutation p.S18F 0.50 deleterious(0.03) benign(0.429) TCGA-FR-A729-06 2 96789912 96789912 G A ASTL Missense_Mutation p.P325S 0.37 tolerated_low_confidence(0.18) benign(0.007) TCGA-FR-A729-06 2 97508166 97508166 C T ANKRD23 Missense_Mutation p.R37K 0.22 tolerated(0.25) benign(0.219) TCGA-FR-A729-06 2 99651713 99651713 T A TSGA10 Nonsense_Mutation p.K532* 0.40 TCGA-FR-A729-06 3 10861208 10861208 C A SLC6A11 Missense_Mutation p.F105L 0.17 tolerated(0.53) probably_damaging(0.994) TCGA-FR-A729-06 3 109027042 109027042 C T DPPA2 Missense_Mutation p.M165I 0.51 tolerated(0.23) benign(0.001) TCGA-FR-A729-06 3 119336937 119336937 C T PLA1A Missense_Mutation p.P276S 0.53 tolerated(0.06) probably_damaging(0.919) TCGA-FR-A729-06 3 121215736 121215736 G A POLQ Missense_Mutation p.P733S 0.38 deleterious(0.03) possibly_damaging(0.725) TCGA-FR-A729-06 3 124053164 124053164 C T KALRN Missense_Mutation p.P488L 0.54 tolerated(0.28) possibly_damaging(0.561) TCGA-FR-A729-06 3 128780819 128780819 C T GP9 Silent p.T79T 0.50 TCGA-FR-A729-06 3 136573438 136573438 G A SLC35G2 Missense_Mutation p.G46R 0.17 deleterious(0.01) possibly_damaging(0.747) TCGA-FR-A729-06 3 14712409 14712409 C T CCDC174 Missense_Mutation p.S371F 0.17 tolerated(0.32) possibly_damaging(0.831) TCGA-FR-A729-06 3 14731525 14731525 C T C3orf20 Missense_Mutation p.A216V 0.15 tolerated(0.23) benign(0.223) TCGA-FR-A729-06 3 168806826 168806826 C T MECOM Missense_Mutation p.E1060K 0.53 tolerated(0.1) benign(0.096) TCGA-FR-A729-06 3 186917565 186917565 G A RTP1 Missense_Mutation p.G167S 0.56 tolerated(0.5) benign(0.228) TCGA-FR-A729-06 3 191861726 191861726 G A FGF12 3'UTR 0.52 TCGA-FR-A729-06 3 193207621 193207621 G A ATP13A4 Silent p.F212F 0.59 TCGA-FR-A729-06 3 195453355 195453355 G A MUC20 Silent p.K627K 0.20 TCGA-FR-A729-06 3 3095621 3095621 G A CNTN4 Missense_Mutation p.G981D 0.22 deleterious(0) unknown(0) TCGA-FR-A729-06 3 38793727 38793727 C T SCN10A Missense_Mutation p.G580R 0.19 tolerated(0.25) benign(0.187) TCGA-FR-A729-06 3 42264665 42264665 C T TRAK1 Silent p.S766S 0.20 TCGA-FR-A729-06 3 45804534 45804534 C T SLC6A20 Missense_Mutation p.G445D 0.15 deleterious(0) probably_damaging(0.956) TCGA-FR-A729-06 3 46621244 46621244 G A TDGF1 Missense_Mutation p.R80K 0.11 tolerated(0.9) benign(0.005) TCGA-FR-A729-06 3 47779567 47779567 C T SMARCC1 Missense_Mutation p.M145I 0.25 tolerated(0.06) benign(0.027) TCGA-FR-A729-06 3 48310735 48310735 C T ZNF589 3'UTR 0.33 TCGA-FR-A729-06 3 48612535 48612535 G A COL7A1 Missense_Mutation p.P2081S 0.65 unknown(0) TCGA-FR-A729-06 3 48630249 48630249 G A COL7A1 Silent p.L269L 0.57 TCGA-FR-A729-06 3 49693309 49693309 C T BSN Missense_Mutation p.S2107F 0.44 unknown(0) TCGA-FR-A729-06 3 50229090 50229090 G A GNAT1 5'UTR 0.53 TCGA-FR-A729-06 3 50416598 50416598 C T CACNA2D2 Missense_Mutation p.M395I 0.33 tolerated(1) benign(0.01) TCGA-FR-A729-06 3 51995246 51995246 G A PCBP4 Missense_Mutation p.S4L 0.62 deleterious_low_confidence(0.04) probably_damaging(0.945) TCGA-FR-A729-06 3 52526515 52526515 C T NISCH 3'UTR 0.43 TCGA-FR-A729-06 3 52555431 52555431 G A STAB1 Missense_Mutation p.G1988D 0.45 tolerated(0.06) probably_damaging(0.992) TCGA-FR-A729-06 3 53156518 53156518 C T RFT1 Missense_Mutation p.V110M 0.18 tolerated(0.06) probably_damaging(0.981) TCGA-FR-A729-06 3 54905632 54905632 G A CACNA2D3 Missense_Mutation p.E565K 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-FR-A729-06 3 57312581 57312581 T C ASB14 Missense_Mutation p.N419D 0.46 deleterious(0) probably_damaging(0.994) TCGA-FR-A729-06 3 67559231 67559231 C T SUCLG2 Missense_Mutation p.V253I 0.48 tolerated(0.1) benign(0.118) TCGA-FR-A729-06 3 86028431 86028431 G A CADM2 Missense_Mutation p.R356K 0.44 tolerated(0.96) benign(0.002) TCGA-FR-A729-06 3 87017931 87017931 G A VGLL3 Missense_Mutation p.P249L 0.14 deleterious(0.01) benign(0.059) TCGA-FR-A729-06 3 97852015 97852015 C T OR5H1 Silent p.I158I 0.54 TCGA-FR-A729-06 3 97868676 97868676 T A OR5H14 Nonsense_Mutation p.Y149* 0.52 TCGA-FR-A729-06 4 115997901 115997901 T A NDST4 Missense_Mutation p.I98F 0.37 deleterious(0.04) probably_damaging(0.969) TCGA-FR-A729-06 4 115998144 115998144 G A NDST4 Missense_Mutation p.L17F 0.20 tolerated_low_confidence(0.07) probably_damaging(0.979) TCGA-FR-A729-06 4 121958804 121958804 C T NDNF Missense_Mutation p.E108K 0.70 tolerated(0.14) possibly_damaging(0.629) TCGA-FR-A729-06 4 126241229 126241229 A C FAT4 Missense_Mutation p.E1221D 0.21 probably_damaging(0.999) TCGA-FR-A729-06 4 128637598 128637598 T A INTU 3'UTR 0.61 TCGA-FR-A729-06 4 151504353 151504353 G A MAB21L2 Missense_Mutation p.E58K 0.35 tolerated(0.09) benign(0.409) TCGA-FR-A729-06 4 154216623 154216623 C T TRIM2 Silent p.D315D 0.44 TCGA-FR-A729-06 4 172735789 172735789 A C GALNTL6 Missense_Mutation p.I20L 0.12 tolerated(0.79) benign(0.001) TCGA-FR-A729-06 4 175897261 175897261 C T ADAM29 Silent p.I195I 0.28 TCGA-FR-A729-06 4 17829943 17829943 G A NCAPG Missense_Mutation p.E566K 0.54 deleterious(0.04) possibly_damaging(0.733) TCGA-FR-A729-06 4 183673000 183673000 G A TENM3 Missense_Mutation p.G1226E 0.59 tolerated(0.26) probably_damaging(0.972) TCGA-FR-A729-06 4 188924685 188924685 G A ZFP42 Missense_Mutation p.E242K 0.48 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 4 41496589 41496589 C T LIMCH1 Missense_Mutation p.R45W 0.53 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 4 48136176 48136176 G A TXK Silent p.S4S 0.11 TCGA-FR-A729-06 4 515794 515794 C T PIGG Intron 0.58 TCGA-FR-A729-06 4 6055836 6055836 C T JAKMIP1 Missense_Mutation p.E583K 0.34 deleterious(0) possibly_damaging(0.803) TCGA-FR-A729-06 4 70080485 70080485 C T UGT2B11 5'Flank 0.62 TCGA-FR-A729-06 4 71200837 71200837 C T CABS1 Silent p.F27F 0.58 TCGA-FR-A729-06 4 71347006 71347006 C T MUC7 Missense_Mutation p.S182F 0.57 deleterious(0) unknown(0) TCGA-FR-A729-06 4 79173646 79173646 A C FRAS1 Missense_Mutation p.H137P 0.60 benign(0.001) TCGA-FR-A729-06 4 81284024 81284024 A C C4orf22 Missense_Mutation p.E76D 0.58 tolerated(0.24) benign(0.268) TCGA-FR-A729-06 4 96256644 96256644 G A UNC5C Missense_Mutation p.A88V 0.55 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 4 98480099 98480099 G A STPG2 3'UTR 0.53 TCGA-FR-A729-06 4 99993786 99993786 C A ADH5 Silent p.V346V 0.19 TCGA-FR-A729-06 5 100192029 100192029 G A ST8SIA4 Missense_Mutation p.P192L 0.10 benign(0.309) TCGA-FR-A729-06 5 111519766 111519766 C T EPB41L4A Silent p.K523K 0.25 TCGA-FR-A729-06 5 112178909 112178909 C T APC Missense_Mutation p.P2540S 0.19 probably_damaging(0.965) TCGA-FR-A729-06 5 112720761 112720761 C T MCC Missense_Mutation p.E107K 0.19 tolerated_low_confidence(0.47) probably_damaging(0.953) TCGA-FR-A729-06 5 112868665 112868665 T G YTHDC2 Silent p.A255A 0.16 TCGA-FR-A729-06 5 121739514 121739514 C T SNCAIP Silent p.I28I 0.15 TCGA-FR-A729-06 5 127644963 127644963 C T FBN2 Missense_Mutation p.E1777K 0.30 deleterious(0.02) probably_damaging(0.925) TCGA-FR-A729-06 5 128351581 128351581 G A SLC27A6 Missense_Mutation p.E325K 0.36 tolerated(0.13) possibly_damaging(0.785) TCGA-FR-A729-06 5 129040054 129040054 C T ADAMTS19 Silent p.C1088C 0.28 TCGA-FR-A729-06 5 131302166 131302166 C T ACSL6 Silent p.K552K 0.30 TCGA-FR-A729-06 5 132150996 132150996 C T SOWAHA 3'UTR 0.15 TCGA-FR-A729-06 5 132159799 132159799 G A SHROOM1 Silent p.P518P 0.20 TCGA-FR-A729-06 5 132561395 132561395 C A FSTL4 Missense_Mutation p.G378C 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 5 133944174 133944174 G A SAR1B Missense_Mutation p.T123I 0.24 tolerated(0.06) possibly_damaging(0.565) TCGA-FR-A729-06 5 135272493 135272493 G A FBXL21 RNA 0.20 TCGA-FR-A729-06 5 135587547 135587547 C T TRPC7 Missense_Mutation p.E457K 0.12 deleterious(0) possibly_damaging(0.562) TCGA-FR-A729-06 5 13721211 13721211 G A DNAH5 Silent p.I4059I 0.14 TCGA-FR-A729-06 5 137423611 137423611 G A WNT8A Missense_Mutation p.G120R 0.20 deleterious(0.04) probably_damaging(1) TCGA-FR-A729-06 5 13781040 13781040 C T DNAH5 Missense_Mutation p.G2950E 0.31 probably_damaging(0.982) TCGA-FR-A729-06 5 13871780 13871780 G A DNAH5 Missense_Mutation p.P1164L 0.38 possibly_damaging(0.713) TCGA-FR-A729-06 5 13886082 13886082 C T DNAH5 Missense_Mutation p.E912K 0.18 benign(0) TCGA-FR-A729-06 5 140181318 140181318 C T PCDHA3 Missense_Mutation p.T179I 0.33 tolerated_low_confidence(0.27) benign(0.016) TCGA-FR-A729-06 5 140182718 140182718 C T PCDHA3 Missense_Mutation p.R646C 0.42 tolerated_low_confidence(0.05) benign(0.214) TCGA-FR-A729-06 5 140256672 140256672 G A PCDHA12 Missense_Mutation p.D539N 0.19 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-FR-A729-06 5 140389325 140389325 G A PCDHAC1 Missense_Mutation p.D899N 0.31 deleterious(0.04) possibly_damaging(0.848) TCGA-FR-A729-06 5 140481739 140481739 C T PCDHB3 Silent p.S502S 0.18 TCGA-FR-A729-06 5 140537389 140537389 C T PCDHB17 3'UTR 0.28 TCGA-FR-A729-06 5 140554308 140554308 G A PCDHB7 Missense_Mutation p.S631N 0.11 deleterious_low_confidence(0.02) benign(0.135) TCGA-FR-A729-06 5 140554819 140554819 C T PCDHB7 3'UTR 0.09 TCGA-FR-A729-06 5 140589137 140589137 C T PCDHB12 Missense_Mutation p.P220S 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A729-06 5 140594016 140594016 C T PCDHB13 Silent p.F107F 0.09 TCGA-FR-A729-06 5 140616396 140616396 G A PCDHB18 RNA 0.30 TCGA-FR-A729-06 5 140718660 140718660 G A PCDHGA2 Missense_Mutation p.R41K 0.27 tolerated_low_confidence(1) benign(0.002) TCGA-FR-A729-06 5 140724498 140724498 G A PCDHGA3 Missense_Mutation p.E300K 0.17 deleterious_low_confidence(0.03) benign(0.186) TCGA-FR-A729-06 5 140762664 140762664 C T PCDHGA7 Silent p.I66I 0.41 TCGA-FR-A729-06 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.29 deleterious(0.04) benign(0.008) TCGA-FR-A729-06 5 140788121 140788121 C T PCDHGB6 Missense_Mutation p.H118Y 0.17 tolerated(0.08) benign(0.039) TCGA-FR-A729-06 5 140866427 140866427 C T PCDHGC4 Missense_Mutation p.P563S 0.42 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 5 140869974 140869974 C T PCDHGC5 Silent p.I389I 0.22 TCGA-FR-A729-06 5 147020269 147020269 C T JAKMIP2 Missense_Mutation p.E467K 0.34 tolerated(0.07) benign(0.003) TCGA-FR-A729-06 5 147504344 147504344 G A SPINK5 Missense_Mutation p.E895K 0.29 deleterious(0.01) benign(0.233) TCGA-FR-A729-06 5 147594468 147594468 G A SPINK6 Silent p.V66V 0.39 TCGA-FR-A729-06 5 148747690 148747690 C T PCYOX1L Missense_Mutation p.P320S 0.29 deleterious(0.02) probably_damaging(0.965) TCGA-FR-A729-06 5 149563051 149563051 C T CDX1 Silent p.F202F 0.37 TCGA-FR-A729-06 5 150704934 150704934 G A SLC36A2 Missense_Mutation p.S308F 0.25 tolerated(0.28) benign(0.001) TCGA-FR-A729-06 5 156375506 156375506 G A TIMD4 Silent p.S255S 0.37 TCGA-FR-A729-06 5 15937145 15937145 C T FBXL7 Silent p.T442T 0.28 TCGA-FR-A729-06 5 159682681 159682681 G A CCNJL Silent p.V254V 0.28 TCGA-FR-A729-06 5 160757965 160757965 C T GABRB2 Silent p.G334G 0.37 TCGA-FR-A729-06 5 160757966 160757966 C T GABRB2 Missense_Mutation p.G334E 0.37 tolerated(0.09) possibly_damaging(0.734) TCGA-FR-A729-06 5 161128738 161128738 C T GABRA6 Missense_Mutation p.L441F 0.38 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 5 167626887 167626887 G A TENM2 Missense_Mutation p.E1061K 0.18 tolerated(0.76) benign(0.016) TCGA-FR-A729-06 5 178199618 178199618 C T AACSP1 RNA 0.25 TCGA-FR-A729-06 5 179025792 179025792 G A RUFY1 Missense_Mutation p.M577I 0.34 tolerated(0.11) benign(0) TCGA-FR-A729-06 5 180047681 180047681 G A FLT4 Silent p.I778I 0.21 TCGA-FR-A729-06 5 19483585 19483585 C T CDH18 Missense_Mutation p.M569I 0.26 tolerated(0.3) benign(0.003) TCGA-FR-A729-06 5 23522419 23522419 G A PRDM9 Missense_Mutation p.R172K 0.15 tolerated(0.08) benign(0) TCGA-FR-A729-06 5 23526718 23526718 G A PRDM9 Silent p.G507G 0.20 TCGA-FR-A729-06 5 35968221 35968221 C T UGT3A1 Missense_Mutation p.E71K 0.20 tolerated(0.57) benign(0.074) TCGA-FR-A729-06 5 36049007 36049007 A T UGT3A2 Missense_Mutation p.I276N 0.14 tolerated(0.15) possibly_damaging(0.689) TCGA-FR-A729-06 5 38463982 38463982 G A EGFLAM Missense_Mutation p.G983E 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 5 39308432 39308432 G A C9 Silent p.C380C 0.14 TCGA-FR-A729-06 5 40947865 40947865 G A C7 Silent p.G300G 0.13 TCGA-FR-A729-06 5 41870382 41870382 C T OXCT1 Splice_Site p.X26_splice 0.31 TCGA-FR-A729-06 5 41870383 41870383 C T OXCT1 Silent p.K26K 0.33 TCGA-FR-A729-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.21 TCGA-FR-A729-06 5 71492887 71492887 C T MAP1B Silent p.T1235T 0.13 TCGA-FR-A729-06 5 74324906 74324906 G A GCNT4 Silent p.S319S 0.24 TCGA-FR-A729-06 5 75427865 75427865 C T SV2C Missense_Mutation p.P97L 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A729-06 5 75919119 75919119 C T F2RL2 5'UTR 0.12 TCGA-FR-A729-06 5 76028518 76028518 C T F2R Silent p.P156P 0.14 TCGA-FR-A729-06 5 79026181 79026181 C T CMYA5 Silent p.I531I 0.42 TCGA-FR-A729-06 5 79028718 79028718 C T CMYA5 Missense_Mutation p.S1377L 0.30 benign(0) TCGA-FR-A729-06 5 79029944 79029944 A G CMYA5 Missense_Mutation p.I1786V 0.33 benign(0.005) TCGA-FR-A729-06 5 79367966 79367966 G A THBS4 Intron 0.21 TCGA-FR-A729-06 5 85578500 85578500 G A NBPF22P RNA 0.26 TCGA-FR-A729-06 5 90049541 90049541 C T GPR98 Nonsense_Mutation p.Q3758* 0.19 TCGA-FR-A729-06 6 100055034 100055034 G A PRDM13 Missense_Mutation p.E42K 0.46 deleterious(0) probably_damaging(0.99) TCGA-FR-A729-06 6 10749495 10749495 T A TMEM14B Missense_Mutation p.F6Y 0.27 tolerated_low_confidence(1) benign(0.081) TCGA-FR-A729-06 6 117248524 117248524 C T RFX6 Silent p.F740F 0.28 TCGA-FR-A729-06 6 117686324 117686324 T G ROS1 Missense_Mutation p.E1006A 0.49 deleterious(0.01) possibly_damaging(0.831) TCGA-FR-A729-06 6 121768708 121768708 C T GJA1 Missense_Mutation p.R239W 0.31 deleterious(0.01) possibly_damaging(0.507) TCGA-FR-A729-06 6 125404058 125404058 G A RNF217 3'UTR 0.32 TCGA-FR-A729-06 6 132176136 132176136 G A ENPP1 Missense_Mutation p.G230R 0.48 tolerated(0.16) possibly_damaging(0.464) TCGA-FR-A729-06 6 13365360 13365360 G A GFOD1 Missense_Mutation p.T263I 0.17 tolerated(0.07) benign(0.002) TCGA-FR-A729-06 6 136599669 136599669 C T BCLAF1 Missense_Mutation p.R117K 0.06 tolerated_low_confidence(0.11) unknown(0) TCGA-FR-A729-06 6 137245159 137245159 C T SLC35D3 Silent p.V192V 0.50 TCGA-FR-A729-06 6 142704965 142704965 G A GPR126 Missense_Mutation p.D403N 0.43 tolerated(0.35) benign(0.017) TCGA-FR-A729-06 6 149795613 149795613 C T ZC3H12D Missense_Mutation p.V23M 0.50 deleterious(0) probably_damaging(0.994) TCGA-FR-A729-06 6 155500248 155500248 C T TIAM2 Missense_Mutation p.P867S 0.43 deleterious(0) probably_damaging(0.98) TCGA-FR-A729-06 6 158517032 158517032 C T SYNJ2 Missense_Mutation p.T1376I 0.64 tolerated_low_confidence(0.08) benign(0.013) TCGA-FR-A729-06 6 159688869 159688869 G A FNDC1 Missense_Mutation p.R1827K 0.59 deleterious(0.05) benign(0.21) TCGA-FR-A729-06 6 17283149 17283149 C T RBM24 Silent p.I94I 0.23 TCGA-FR-A729-06 6 25779359 25779359 C T SLC17A4 Silent p.I479I 0.61 TCGA-FR-A729-06 6 31752202 31752202 G A VARS Silent p.L515L 0.11 TCGA-FR-A729-06 6 3226475 3226475 G A TUBB2B Silent p.L65L 0.30 TCGA-FR-A729-06 6 41738817 41738817 C T FRS3 Missense_Mutation p.G340E 0.49 tolerated(0.94) benign(0.003) TCGA-FR-A729-06 6 43109956 43109956 C T PTK7 Missense_Mutation p.P664S 0.65 tolerated(0.59) benign(0.006) TCGA-FR-A729-06 6 43487076 43487076 C T POLR1C Silent p.F49F 0.30 TCGA-FR-A729-06 6 46135783 46135783 A C ENPP5 Missense_Mutation p.Y73D 0.52 deleterious(0.04) probably_damaging(0.997) TCGA-FR-A729-06 6 46826266 46826266 G A GPR116 Missense_Mutation p.S1125F 0.20 deleterious(0) probably_damaging(0.996) TCGA-FR-A729-06 6 52696730 52696730 C T GSTA5 Silent p.K195K 0.28 TCGA-FR-A729-06 6 54804523 54804523 A G FAM83B Missense_Mutation p.K252E 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 6 54805396 54805396 T A FAM83B Missense_Mutation p.S543T 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A729-06 6 55223928 55223928 C T GFRAL Missense_Mutation p.S315L 0.49 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 6 6145988 6145988 G A F13A1 Missense_Mutation p.S688F 0.24 deleterious(0) benign(0.382) TCGA-FR-A729-06 6 63990574 63990574 C T LGSN Silent p.R294R 0.51 TCGA-FR-A729-06 6 70064124 70064124 G A BAI3 Splice_Site p.X1154_splice 0.60 TCGA-FR-A729-06 6 7581205 7581205 G A DSP Silent p.L1594L 0.33 TCGA-FR-A729-06 6 7586007 7586007 C T DSP Missense_Mutation p.R2838C 0.27 probably_damaging(0.988) TCGA-FR-A729-06 6 84056038 84056038 C T ME1 Missense_Mutation p.D152N 0.50 deleterious(0) probably_damaging(0.996) TCGA-FR-A729-06 6 84270651 84270651 G A SNAP91 Missense_Mutation p.P820S 0.39 tolerated(0.07) probably_damaging(0.986) TCGA-FR-A729-06 6 96971027 96971027 C T UFL1 Missense_Mutation p.S28F 0.44 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 7 100549900 100549900 C T MUC3A Missense_Mutation p.P161S 0.12 deleterious(0.02) unknown(0) TCGA-FR-A729-06 7 100679679 100679679 C T MUC17 Missense_Mutation p.P1661L 0.41 possibly_damaging(0.889) TCGA-FR-A729-06 7 100680533 100680533 C T MUC17 Missense_Mutation p.L1946F 0.14 unknown(0) TCGA-FR-A729-06 7 103061818 103061818 C T SLC26A5 Silent p.Q48Q 0.47 TCGA-FR-A729-06 7 103138530 103138530 C T RELN Missense_Mutation p.G2946D 0.11 tolerated(0.27) probably_damaging(1) TCGA-FR-A729-06 7 105098242 105098242 G A PUS7 Missense_Mutation p.R661C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A729-06 7 106508317 106508317 G A PIK3CG Missense_Mutation p.G104E 0.48 tolerated(0.32) benign(0.016) TCGA-FR-A729-06 7 107558457 107558457 T G DLD Missense_Mutation p.L442R 0.13 deleterious(0) probably_damaging(0.98) TCGA-FR-A729-06 7 107706920 107706920 G A LAMB4 Missense_Mutation p.P858S 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 7 113519111 113519111 T G PPP1R3A Missense_Mutation p.Q679P 0.14 deleterious(0.05) benign(0.062) TCGA-FR-A729-06 7 116339804 116339804 G A MET Silent p.T222T 0.16 TCGA-FR-A729-06 7 116418932 116418932 G A MET Missense_Mutation p.R1166Q 0.06 deleterious(0.03) probably_damaging(0.984) TCGA-FR-A729-06 7 116955301 116955301 C T WNT2 Missense_Mutation p.D138N 0.52 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A729-06 7 117067440 117067440 C T ASZ1 Nonsense_Mutation p.W25* 0.40 TCGA-FR-A729-06 7 122342408 122342408 G A RNF148 Nonsense_Mutation p.Q133* 0.16 TCGA-FR-A729-06 7 122755669 122755669 A G SLC13A1 Missense_Mutation p.V564A 0.20 tolerated(0.21) possibly_damaging(0.874) TCGA-FR-A729-06 7 122759222 122759222 C T SLC13A1 Silent p.L475L 0.16 TCGA-FR-A729-06 7 123097596 123097596 C T IQUB Missense_Mutation p.E678K 0.18 deleterious(0) probably_damaging(0.992) TCGA-FR-A729-06 7 128478768 128478768 G A FLNC Missense_Mutation p.R441K 0.40 tolerated(0.87) benign(0.008) TCGA-FR-A729-06 7 129933028 129933028 G A CPA4 Nonsense_Mutation p.W3* 0.16 TCGA-FR-A729-06 7 139138434 139138434 C T KLRG2 Missense_Mutation p.D377N 0.19 tolerated(0.19) benign(0.055) TCGA-FR-A729-06 7 139225123 139225123 G A CLEC2L Missense_Mutation p.G108R 0.36 tolerated(1) benign(0.022) TCGA-FR-A729-06 7 139225124 139225124 G A CLEC2L Missense_Mutation p.G108E 0.27 tolerated(0.18) benign(0.271) TCGA-FR-A729-06 7 139229010 139229010 C T CLEC2L Silent p.F189F 0.33 TCGA-FR-A729-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-FR-A729-06 7 141672872 141672872 G A TAS2R38 Silent p.F206F 0.13 TCGA-FR-A729-06 7 141755854 141755854 G A MGAM Missense_Mutation p.G1180S 0.21 tolerated(0.08) possibly_damaging(0.808) TCGA-FR-A729-06 7 142111427 142111427 C T TRBV5-7 Silent p.G103G 0.49 TCGA-FR-A729-06 7 142423427 142423427 G A TRBV27 Missense_Mutation p.R28K 0.55 TCGA-FR-A729-06 7 142459672 142459672 G A PRSS1 Missense_Mutation p.G83E 0.28 deleterious(0.02) possibly_damaging(0.646) TCGA-FR-A729-06 7 143268895 143268895 G A CTAGE15 5'UTR 0.56 TCGA-FR-A729-06 7 143453548 143453548 A G CTAGE6 Silent p.L402L 0.41 TCGA-FR-A729-06 7 143556251 143556251 C T FAM115A Nonsense_Mutation p.W724* 0.24 TCGA-FR-A729-06 7 143657140 143657140 C T OR2F1 Missense_Mutation p.S26F 0.17 tolerated(0.74) benign(0.002) TCGA-FR-A729-06 7 143792982 143792982 C T OR2A12 Missense_Mutation p.P261L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 7 149129105 149129105 G A ZNF777 Missense_Mutation p.P753L 0.10 tolerated(0.12) possibly_damaging(0.892) TCGA-FR-A729-06 7 149500562 149500562 G A SSPO Splice_Site 0.11 TCGA-FR-A729-06 7 150069707 150069707 C T REPIN1 Silent p.F516F 0.43 TCGA-FR-A729-06 7 150389535 150389535 C T GIMAP2 Missense_Mutation p.S54F 0.45 deleterious(0) possibly_damaging(0.502) TCGA-FR-A729-06 7 150911232 150911232 A C ABCF2 Missense_Mutation p.W594G 0.19 deleterious(0) probably_damaging(0.976) TCGA-FR-A729-06 7 154876258 154876258 C T HTR5A 3'UTR 0.20 TCGA-FR-A729-06 7 157926419 157926419 C T PTPRN2 Silent p.E502E 0.38 TCGA-FR-A729-06 7 21779270 21779270 C T DNAH11 Silent p.F2638F 0.11 TCGA-FR-A729-06 7 21940708 21940708 A G DNAH11 Missense_Mutation p.K4470E 0.09 possibly_damaging(0.492) TCGA-FR-A729-06 7 2472387 2472387 C T CHST12 Missense_Mutation p.T38M 0.28 deleterious(0) possibly_damaging(0.882) TCGA-FR-A729-06 7 24742400 24742400 G A DFNA5 Silent p.I412I 0.10 TCGA-FR-A729-06 7 27147397 27147397 G A HOXA3 3'UTR 0.38 TCGA-FR-A729-06 7 27168903 27168903 G A HOXA4 Missense_Mutation p.P302S 0.56 tolerated_low_confidence(0.15) benign(0) TCGA-FR-A729-06 7 2976766 2976766 C T CARD11 Missense_Mutation p.E416K 0.15 deleterious(0.04) probably_damaging(0.948) TCGA-FR-A729-06 7 36327301 36327301 C T EEPD1 Silent p.L410L 0.11 TCGA-FR-A729-06 7 37927983 37927983 A C NME8 Missense_Mutation p.Q451P 0.11 deleterious(0) probably_damaging(0.962) TCGA-FR-A729-06 7 39379351 39379351 G A POU6F2 Missense_Mutation p.A208T 0.44 tolerated_low_confidence(0.2) unknown(0) TCGA-FR-A729-06 7 39500197 39500197 G A POU6F2 Missense_Mutation p.R485Q 0.55 deleterious(0.03) unknown(0) TCGA-FR-A729-06 7 39730142 39730142 T G RALA Silent p.V92V 0.56 TCGA-FR-A729-06 7 43532712 43532712 C T HECW1 Missense_Mutation p.R1124C 0.12 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 7 44578438 44578438 C T NPC1L1 Missense_Mutation p.D520N 0.10 deleterious(0.04) probably_damaging(0.986) TCGA-FR-A729-06 7 48142980 48142980 C T UPP1 Silent p.I136I 0.40 TCGA-FR-A729-06 7 53103390 53103390 C T POM121L12 Missense_Mutation p.S9F 0.23 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FR-A729-06 7 53103819 53103819 G A POM121L12 Missense_Mutation p.R152K 0.28 tolerated(0.71) benign(0) TCGA-FR-A729-06 7 53104265 53104265 C T POM121L12 3'UTR 0.12 TCGA-FR-A729-06 7 64453074 64453074 G A ERV3-1 Missense_Mutation p.P111S 0.11 tolerated(0.94) benign(0.061) TCGA-FR-A729-06 7 6731136 6731136 G A ZNF12 Silent p.A479A 0.08 TCGA-FR-A729-06 7 82580518 82580518 G A PCLO Missense_Mutation p.S3129L 0.44 unknown(0) TCGA-FR-A729-06 7 82997325 82997325 C T SEMA3E Missense_Mutation p.M635I 0.28 deleterious(0.02) benign(0.119) TCGA-FR-A729-06 7 86415769 86415769 G A GRM3 Missense_Mutation p.D221N 0.46 tolerated(0.92) probably_damaging(0.993) TCGA-FR-A729-06 7 86537837 86537837 C T KIAA1324L Silent p.L794L 0.45 TCGA-FR-A729-06 7 89891294 89891294 C T C7orf63 Silent p.L94L 0.08 TCGA-FR-A729-06 7 89909177 89909177 C T C7orf63 Missense_Mutation p.L448F 0.40 deleterious(0) probably_damaging(0.992) TCGA-FR-A729-06 7 92760570 92760570 G A SAMD9L Missense_Mutation p.S1572F 0.10 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 7 94935641 94935641 G A PON1 Missense_Mutation p.H246Y 0.19 tolerated(0.1) probably_damaging(0.971) TCGA-FR-A729-06 7 97852457 97852457 G A TECPR1 Missense_Mutation p.P925S 0.31 tolerated(0.08) benign(0.252) TCGA-FR-A729-06 7 99084756 99084756 G A ZNF789 Missense_Mutation p.S308N 0.46 deleterious(0.01) possibly_damaging(0.694) TCGA-FR-A729-06 7 99474027 99474027 G A OR2AE1 Silent p.I210I 0.61 TCGA-FR-A729-06 8 100493941 100493941 C T VPS13B Missense_Mutation p.P1261S 0.35 deleterious(0.02) probably_damaging(0.958) TCGA-FR-A729-06 8 10555294 10555294 G A C8orf74 Missense_Mutation p.E143K 0.24 deleterious(0.02) possibly_damaging(0.641) TCGA-FR-A729-06 8 106815108 106815108 C T ZFPM2 Missense_Mutation p.S933L 0.52 tolerated_low_confidence(0.08) benign(0.4) TCGA-FR-A729-06 8 110100443 110100443 G A TRHR Nonsense_Mutation p.W234* 0.23 TCGA-FR-A729-06 8 110465028 110465028 C T PKHD1L1 Missense_Mutation p.L2197F 0.30 tolerated(0.36) benign(0.12) TCGA-FR-A729-06 8 110476857 110476857 G A PKHD1L1 Missense_Mutation p.R2599K 0.39 tolerated(0.39) benign(0.044) TCGA-FR-A729-06 8 11189270 11189270 C T SLC35G5 Missense_Mutation p.L219F 0.39 tolerated(0.08) benign(0.269) TCGA-FR-A729-06 8 113871435 113871435 G A CSMD3 Missense_Mutation p.P565L 0.24 deleterious(0) possibly_damaging(0.686) TCGA-FR-A729-06 8 116617072 116617072 A C TRPS1 Missense_Mutation p.I375R 0.13 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-FR-A729-06 8 118169951 118169951 C T SLC30A8 Missense_Mutation p.S147F 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 8 120638945 120638945 G A ENPP2 Missense_Mutation p.P51L 0.26 deleterious(0.05) benign(0.169) TCGA-FR-A729-06 8 132002765 132002765 G A ADCY8 Silent p.F328F 0.37 TCGA-FR-A729-06 8 135614561 135614561 G A ZFAT Silent p.F467F 0.37 TCGA-FR-A729-06 8 139163842 139163842 G A FAM135B Missense_Mutation p.S959L 0.32 tolerated_low_confidence(0.15) benign(0.001) TCGA-FR-A729-06 8 142238466 142238466 G A SLC45A4 5'UTR 0.37 TCGA-FR-A729-06 8 144893224 144893224 G A SCRIB Silent p.F375F 0.37 TCGA-FR-A729-06 8 145541468 145541468 G A DGAT1 Silent p.L291L 0.17 TCGA-FR-A729-06 8 145661111 145661111 G A TONSL Missense_Mutation p.P902L 0.23 tolerated(0.18) benign(0.002) TCGA-FR-A729-06 8 15998485 15998485 G A MSR1 Intron 0.37 TCGA-FR-A729-06 8 17478671 17478671 G A PDGFRL Silent p.K155K 0.37 TCGA-FR-A729-06 8 22106628 22106628 C T POLR3D Missense_Mutation p.P243S 0.29 tolerated(0.08) benign(0.292) TCGA-FR-A729-06 8 22548061 22548061 C T EGR3 Silent p.A363A 0.19 TCGA-FR-A729-06 8 22548725 22548725 G A EGR3 Missense_Mutation p.P142L 0.38 tolerated(0.14) benign(0.081) TCGA-FR-A729-06 8 23294526 23294526 G A ENTPD4 Missense_Mutation p.S432F 0.26 deleterious(0.02) probably_damaging(1) TCGA-FR-A729-06 8 24349565 24349565 G A ADAM7 Silent p.G502G 0.26 TCGA-FR-A729-06 8 24771973 24771973 A C NEFM Missense_Mutation p.K223Q 0.47 deleterious(0) unknown(0) TCGA-FR-A729-06 8 2800094 2800094 G A CSMD1 Missense_Mutation p.H3479Y 0.27 benign(0.169) TCGA-FR-A729-06 8 2813237 2813237 C T CSMD1 Missense_Mutation p.D3290N 0.35 probably_damaging(0.994) TCGA-FR-A729-06 8 2910128 2910128 A T CSMD1 Missense_Mutation p.F2506I 0.20 benign(0.007) TCGA-FR-A729-06 8 39495126 39495126 C T ADAM18 Missense_Mutation p.S244F 0.56 deleterious(0.03) benign(0.2) TCGA-FR-A729-06 8 41554027 41554027 G A ANK1 Silent p.I979I 0.21 TCGA-FR-A729-06 8 43173624 43173624 G A POTEA RNA 0.08 TCGA-FR-A729-06 8 48353008 48353008 C T SPIDR Missense_Mutation p.P334L 0.40 tolerated(0.18) benign(0.025) TCGA-FR-A729-06 8 51363267 51363267 G A SNTG1 Missense_Mutation p.R114K 0.10 tolerated(0.16) possibly_damaging(0.472) TCGA-FR-A729-06 8 52321401 52321401 G A PXDNL Missense_Mutation p.P928L 0.22 tolerated(0.27) benign(0.008) TCGA-FR-A729-06 8 53049985 53049985 G A ST18 Missense_Mutation p.R743C 0.16 deleterious(0) probably_damaging(0.989) TCGA-FR-A729-06 8 54729994 54729994 G A ATP6V1H Missense_Mutation p.P135S 0.34 tolerated(0.73) benign(0.026) TCGA-FR-A729-06 8 55539152 55539152 C A RP1 Missense_Mutation p.P904T 0.35 tolerated(0.23) benign(0.065) TCGA-FR-A729-06 8 56864640 56864640 T A LYN Missense_Mutation p.F201L 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A729-06 8 56864641 56864641 C T LYN Missense_Mutation p.P202S 0.34 tolerated(0.99) benign(0.005) TCGA-FR-A729-06 8 57353847 57353847 C T PENK Missense_Mutation p.G263E 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 8 59872522 59872522 C T TOX Missense_Mutation p.D50N 0.25 deleterious(0.02) benign(0.086) TCGA-FR-A729-06 8 62212507 62212507 G A CLVS1 Missense_Mutation p.E41K 0.29 deleterious(0) probably_damaging(0.995) TCGA-FR-A729-06 8 67372670 67372670 C T ADHFE1 Silent p.I430I 0.43 TCGA-FR-A729-06 8 67546920 67546920 G A VCPIP1 Missense_Mutation p.P1162L 0.14 deleterious_low_confidence(0.04) benign(0.002) TCGA-FR-A729-06 8 68004089 68004089 C G CSPP1 Intron 0.34 TCGA-FR-A729-06 8 6874200 6874200 G A DEFA3 Missense_Mutation p.P58L 0.10 tolerated(0.16) benign(0.015) TCGA-FR-A729-06 8 69000017 69000017 C T PREX2 Missense_Mutation p.P696S 0.11 deleterious(0) probably_damaging(0.999) TCGA-FR-A729-06 8 69002840 69002840 C T PREX2 Missense_Mutation p.H714Y 0.26 tolerated(1) benign(0.356) TCGA-FR-A729-06 8 69021785 69021785 A G PREX2 Missense_Mutation p.I1025V 0.16 tolerated(0.13) benign(0) TCGA-FR-A729-06 8 69434034 69434034 G A C8orf34 Missense_Mutation p.E256K 0.35 deleterious(0.04) possibly_damaging(0.82) TCGA-FR-A729-06 8 72984052 72984052 C T TRPA1 Silent p.K54K 0.33 TCGA-FR-A729-06 8 77764324 77764324 C T ZFHX4 Missense_Mutation p.P1723S 0.33 possibly_damaging(0.803) TCGA-FR-A729-06 8 87666270 87666270 C T CNGB3 Silent p.R291R 0.35 TCGA-FR-A729-06 9 105767323 105767323 G A CYLC2 Missense_Mutation p.G137E 0.50 tolerated(1) benign(0) TCGA-FR-A729-06 9 107332133 107332133 C T OR13C8 Missense_Mutation p.P229S 0.43 tolerated(0.25) possibly_damaging(0.492) TCGA-FR-A729-06 9 107332146 107332146 G A OR13C8 Missense_Mutation p.G233E 0.38 deleterious(0.02) probably_damaging(1) TCGA-FR-A729-06 9 114293183 114293183 C T ZNF483 Silent p.S147S 0.33 TCGA-FR-A729-06 9 135263537 135263537 G A TTF1 Silent p.S767S 0.35 TCGA-FR-A729-06 9 136522397 136522397 C T DBH Intron 0.33 TCGA-FR-A729-06 9 136596434 136596434 C T SARDH Missense_Mutation p.G228E 0.48 deleterious(0) probably_damaging(0.969) TCGA-FR-A729-06 9 136660842 136660842 G A VAV2 Missense_Mutation p.S350F 0.48 deleterious(0) probably_damaging(0.972) TCGA-FR-A729-06 9 137622247 137622247 C T COL5A1 Missense_Mutation p.P364S 0.39 probably_damaging(0.993) TCGA-FR-A729-06 9 137644446 137644446 G A COL5A1 Silent p.R558R 0.13 TCGA-FR-A729-06 9 14748430 14748430 C T FREM1 Missense_Mutation p.R1922K 0.50 tolerated(1) benign(0.001) TCGA-FR-A729-06 9 14859446 14859446 G A FREM1 Silent p.I122I 0.50 TCGA-FR-A729-06 9 32784698 32784698 A C TMEM215 Missense_Mutation p.T173P 0.39 tolerated(0.29) benign(0.067) TCGA-FR-A729-06 9 33385201 33385201 G A AQP7 Silent p.G277G 0.37 TCGA-FR-A729-06 9 5757375 5757375 A G KIAA1432 Missense_Mutation p.H639R 0.40 deleterious(0) probably_damaging(0.972) TCGA-FR-A729-06 9 84530784 84530784 C T SPATA31D5P RNA 0.24 TCGA-FR-A729-06 9 84532694 84532694 G A SPATA31D5P RNA 0.39 TCGA-FR-A729-06 9 84607677 84607677 T A SPATA31D1 Silent p.L764L 0.48 TCGA-FR-A729-06 9 86297971 86297971 G A UBQLN1 Missense_Mutation p.H115Y 0.34 deleterious(0.04) benign(0.139) TCGA-FR-A729-06 9 96860350 96860350 C T PTPDC1 Missense_Mutation p.A499V 0.34 tolerated(0.21) benign(0.008) TCGA-FR-A729-06 X 10181791 10181791 C T CLCN4 Silent p.I549I 0.14 TCGA-FR-A729-06 X 105450104 105450104 G A MUM1L1 Missense_Mutation p.E227K 0.18 tolerated(0.1) probably_damaging(0.919) TCGA-FR-A729-06 X 105883917 105883917 A G CXorf57 Missense_Mutation p.K624E 0.17 tolerated(0.2) possibly_damaging(0.879) TCGA-FR-A729-06 X 107018432 107018432 G A TSC22D3 Missense_Mutation p.S73L 0.22 deleterious(0) probably_damaging(0.941) TCGA-FR-A729-06 X 107834377 107834377 C G COL4A5 Missense_Mutation p.P419A 0.28 unknown(0) TCGA-FR-A729-06 X 107977067 107977067 G A IRS4 Silent p.F836F 0.11 TCGA-FR-A729-06 X 114524374 114524374 C T LUZP4 Missense_Mutation p.H17Y 0.17 tolerated(1) benign(0.013) TCGA-FR-A729-06 X 114883927 114883927 C T PLS3 3'UTR 0.22 TCGA-FR-A729-06 X 119500422 119500422 G A ATP1B4 Missense_Mutation p.E36K 0.16 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-FR-A729-06 X 122387247 122387247 A C GRIA3 Missense_Mutation p.H121P 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 X 122551674 122551674 C T GRIA3 Intron 0.10 TCGA-FR-A729-06 X 125685446 125685446 G A DCAF12L1 Silent p.F382F 0.25 TCGA-FR-A729-06 X 127184991 127184991 T G ACTRT1 3'UTR 0.36 TCGA-FR-A729-06 X 131203683 131203683 C T MST4 Missense_Mutation p.P259S 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 X 132826429 132826429 G A GPC3 Silent p.T443T 0.18 TCGA-FR-A729-06 X 135067947 135067947 G A SLC9A6 Missense_Mutation p.A96T 0.24 tolerated(0.1) benign(0.108) TCGA-FR-A729-06 X 135431728 135431728 C T GPR112 Missense_Mutation p.P1955S 0.16 tolerated(0.11) benign(0.008) TCGA-FR-A729-06 X 139865915 139865915 C T CDR1 Nonsense_Mutation p.W206* 0.19 TCGA-FR-A729-06 X 148037911 148037911 C T AFF2 Missense_Mutation p.S779L 0.15 deleterious(0) probably_damaging(0.994) TCGA-FR-A729-06 X 1506263 1506263 G A SLC25A6 Silent p.I216I 0.25 TCGA-FR-A729-06 X 150789990 150789990 G A PASD1 Missense_Mutation p.G115E 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 X 151092737 151092737 G A MAGEA4 Missense_Mutation p.G201S 0.17 tolerated(0.07) possibly_damaging(0.887) TCGA-FR-A729-06 X 151093110 151093110 C T MAGEA4 3'UTR 0.41 TCGA-FR-A729-06 X 151123933 151123933 G A GABRE Silent p.F348F 0.22 TCGA-FR-A729-06 X 151303535 151303535 G A MAGEA10 Silent p.V186V 0.39 TCGA-FR-A729-06 X 151820055 151820055 C T GABRQ Missense_Mutation p.S323F 0.17 deleterious(0) probably_damaging(0.917) TCGA-FR-A729-06 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.15 TCGA-FR-A729-06 X 152226010 152226010 G A PNMA3 Missense_Mutation p.E200K 0.11 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 X 153053319 153053319 G A IDH3G Missense_Mutation p.R167W 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A729-06 X 153717207 153717207 G A SLC10A3 Missense_Mutation p.P25S 0.19 deleterious_low_confidence(0.04) benign(0.054) TCGA-FR-A729-06 X 15599464 15599464 G A ACE2 Missense_Mutation p.S317F 0.39 deleterious(0) probably_damaging(0.997) TCGA-FR-A729-06 X 19478105 19478105 G A MAP3K15 Nonsense_Mutation p.Q296* 0.10 TCGA-FR-A729-06 X 21534600 21534600 C T CNKSR2 Intron 0.36 TCGA-FR-A729-06 X 22291977 22291977 C T ZNF645 Missense_Mutation p.S290L 0.21 deleterious(0.01) benign(0) TCGA-FR-A729-06 X 23410719 23410719 G A PTCHD1 Missense_Mutation p.E362K 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A729-06 X 23689723 23689723 C T PRDX4 Missense_Mutation p.R107C 0.16 deleterious(0) possibly_damaging(0.661) TCGA-FR-A729-06 X 24549848 24549848 C T PDK3 Silent p.S346S 0.14 TCGA-FR-A729-06 X 26212322 26212322 C T MAGEB6 Missense_Mutation p.S120L 0.34 deleterious(0.01) possibly_damaging(0.587) TCGA-FR-A729-06 X 27766246 27766246 A C DCAF8L2 Missense_Mutation p.T412P 0.44 deleterious(0) benign(0.395) TCGA-FR-A729-06 X 30260652 30260652 G A MAGEB4 Missense_Mutation p.E134K 0.15 deleterious(0.05) possibly_damaging(0.649) TCGA-FR-A729-06 X 32407761 32407761 G A DMD Nonsense_Mutation p.R1459* 0.25 TCGA-FR-A729-06 X 35820350 35820350 G A MAGEB16 Missense_Mutation p.D13N 0.33 deleterious(0.04) benign(0.085) TCGA-FR-A729-06 X 35937931 35937931 G A CXorf22 Silent p.K5K 0.18 TCGA-FR-A729-06 X 35993994 35993994 G A CXorf22 Missense_Mutation p.G893R 0.31 tolerated(0.26) benign(0.009) TCGA-FR-A729-06 X 37587351 37587351 G A XK Missense_Mutation p.R324K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A729-06 X 38016282 38016282 G A SRPX Missense_Mutation p.A319V 0.33 deleterious(0.01) benign(0.141) TCGA-FR-A729-06 X 39911648 39911648 C T BCOR Missense_Mutation p.R1661Q 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A729-06 X 41420889 41420889 G A CASK Missense_Mutation p.H531Y 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 X 44949069 44949069 T C KDM6A Silent p.F1210F 0.32 TCGA-FR-A729-06 X 48213495 48213495 A T SSX3 Missense_Mutation p.N73K 0.12 tolerated(0.24) benign(0.041) TCGA-FR-A729-06 X 49084580 49084580 C T CACNA1F Missense_Mutation p.E346K 0.12 deleterious(0.01) possibly_damaging(0.849) TCGA-FR-A729-06 X 49855099 49855099 C T CLCN5 Missense_Mutation p.P691S 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A729-06 X 49958949 49958949 T C AKAP4 Missense_Mutation p.K139E 0.15 tolerated(0.14) benign(0.338) TCGA-FR-A729-06 X 49961575 49961575 C T AKAP4 Silent p.V81V 0.28 TCGA-FR-A729-06 X 52825292 52825292 C T SPANXN5 3'UTR 0.32 TCGA-FR-A729-06 X 52891585 52891585 G A XAGE3 3'UTR 0.18 TCGA-FR-A729-06 X 54959896 54959896 C T PFKFB1 Splice_Site p.X453_splice 0.21 TCGA-FR-A729-06 X 55514355 55514355 C T USP51 Missense_Mutation p.E340K 0.19 tolerated(0.57) benign(0.006) TCGA-FR-A729-06 X 64139980 64139980 C T ZC4H2 Missense_Mutation p.E127K 0.25 tolerated(0.06) benign(0.171) TCGA-FR-A729-06 X 69516925 69516925 G A KIF4A Missense_Mutation p.E105K 0.15 tolerated(0.47) benign(0.016) TCGA-FR-A729-06 X 70472547 70472547 G A ZMYM3 Missense_Mutation p.P187S 0.16 tolerated_low_confidence(0.33) benign(0.19) TCGA-FR-A729-06 X 7267947 7267947 C T STS Missense_Mutation p.A466V 0.16 tolerated(0.96) benign(0.039) TCGA-FR-A729-06 X 77225089 77225089 C T PGAM4 Nonsense_Mutation p.W16* 0.13 TCGA-FR-A729-06 X 77380864 77380864 G A PGK1 Silent p.T385T 0.18 TCGA-FR-A729-06 X 77913110 77913110 G C ZCCHC5 Missense_Mutation p.P270A 0.17 deleterious(0.02) benign(0.197) TCGA-FR-A729-06 X 78011008 78011008 C T LPAR4 Silent p.I214I 0.16 TCGA-FR-A729-06 X 78011528 78011528 C T LPAR4 3'UTR 0.12 TCGA-FR-A729-06 X 78216560 78216560 C T P2RY10 Silent p.C181C 0.18 TCGA-FR-A729-06 X 79282234 79282234 C T TBX22 Missense_Mutation p.P222L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A729-06 X 83128877 83128877 G A CYLC1 Silent p.L387L 0.38 TCGA-FR-A729-06 X 84526394 84526394 G A ZNF711 Missense_Mutation p.D616N 0.27 deleterious(0.03) possibly_damaging(0.871) TCGA-FR-A729-06 X 84526463 84526463 G A ZNF711 Missense_Mutation p.D639N 0.32 tolerated(0.41) possibly_damaging(0.828) TCGA-FR-A729-06 X 84537172 84537172 C T POF1B Intron 0.18 TCGA-FR-A729-06 X 85906137 85906137 G A DACH2 Missense_Mutation p.E247K 0.27 tolerated(0.06) possibly_damaging(0.522) TCGA-FR-A729-06 X 88009059 88009059 G A CPXCR1 Missense_Mutation p.G215E 0.31 tolerated(0.18) probably_damaging(0.988) TCGA-FR-A729-06 X 90690556 90690556 C T PABPC5 5'UTR 0.36 TCGA-FR-A729-06 X 91456405 91456405 C T PCDH11X Missense_Mutation p.P1022L 0.15 deleterious(0.01) benign(0.009) TCGA-FR-A729-06 X 99551566 99551566 G A PCDH19 Silent p.I1052I 0.36 TCGA-FR-A7U8-06 11 128350333 128350334 - C ETS1 Frame_Shift_Ins p.Q293Pfs*5 0.41 TCGA-FR-A7U8-06 11 5322946 5322946 G T OR51B4 Silent p.P77P 0.28 TCGA-FR-A7U8-06 11 68707074 68707074 G A IGHMBP2 Missense_Mutation p.G953S 0.36 deleterious(0) probably_damaging(0.972) TCGA-FR-A7U8-06 12 14940317 14940317 G A WBP11 Silent p.A536A 0.43 TCGA-FR-A7U8-06 12 4409158 4409158 C T CCND2 Missense_Mutation p.R285W 0.44 deleterious(0) possibly_damaging(0.88) TCGA-FR-A7U8-06 12 51717907 51717907 C T BIN2 5'UTR 0.62 TCGA-FR-A7U8-06 12 89745823 89745823 C T DUSP6 5'UTR 0.41 TCGA-FR-A7U8-06 12 8990121 8990121 C T A2ML1 Missense_Mutation p.R272W 0.05 tolerated(0.15) benign(0.001) TCGA-FR-A7U8-06 14 91007879 91007879 C G TTC7B Missense_Mutation p.D789H 0.38 deleterious(0) probably_damaging(0.937) TCGA-FR-A7U8-06 15 52414883 52414883 A - GNB5 3'UTR 0.36 TCGA-FR-A7U8-06 16 20563556 20563556 G A ACSM2B Silent p.N268N 0.47 TCGA-FR-A7U8-06 16 29706013 29706013 C T QPRT Silent p.T14T 0.53 TCGA-FR-A7U8-06 16 57760131 57760131 G A CCDC135 Missense_Mutation p.R637H 0.38 tolerated(0.39) possibly_damaging(0.888) TCGA-FR-A7U8-06 16 67679674 67679674 G A RLTPR Silent p.P60P 0.44 TCGA-FR-A7U8-06 16 70349733 70349733 T A DDX19B Intron 0.24 TCGA-FR-A7U8-06 17 12044521 12044521 T C MAP2K4 Missense_Mutation p.C382R 0.38 tolerated(0.52) possibly_damaging(0.633) TCGA-FR-A7U8-06 17 39553664 39553664 T A KRT31 Missense_Mutation p.N43I 0.45 tolerated(0.25) benign(0.017) TCGA-FR-A7U8-06 18 25572684 25572684 G T CDH2 Missense_Mutation p.P427T 0.42 deleterious(0.03) possibly_damaging(0.769) TCGA-FR-A7U8-06 18 54362255 54362255 G C WDR7 Missense_Mutation p.D395H 0.34 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U8-06 19 15567048 15567048 G A RASAL3 Missense_Mutation p.R530W 0.06 deleterious(0.02) probably_damaging(0.912) TCGA-FR-A7U8-06 19 43579519 43579519 G A PSG2 Silent p.T232T 0.39 TCGA-FR-A7U8-06 19 52568918 52568918 A T ZNF841 Nonsense_Mutation p.C739* 0.43 TCGA-FR-A7U8-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.68 tolerated(0.06) benign(0.006) TCGA-FR-A7U8-06 1 240371706 240371706 G A FMN2 Silent p.P1198P 0.50 TCGA-FR-A7U8-06 1 241676959 241676959 G C FH Missense_Mutation p.Q108E 0.39 tolerated(0.67) benign(0.002) TCGA-FR-A7U8-06 2 178416069 178416069 A T TTC30B Missense_Mutation p.Y475N 0.28 deleterious(0.03) probably_damaging(0.95) TCGA-FR-A7U8-06 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A7U8-06 2 219495496 219495496 G A PLCD4 Missense_Mutation p.V415M 0.43 tolerated(0.1) benign(0.019) TCGA-FR-A7U8-06 2 231407550 231407550 G C SP100 Splice_Site p.X850_splice 0.50 TCGA-FR-A7U8-06 2 231407551 231407551 G A SP100 Missense_Mutation p.E850K 0.50 tolerated(0.29) possibly_damaging(0.486) TCGA-FR-A7U8-06 2 238402139 238402139 C T MLPH Nonsense_Mutation p.R24* 0.43 TCGA-FR-A7U8-06 2 33505179 33505179 C T LTBP1 Silent p.C1022C 0.39 TCGA-FR-A7U8-06 3 168833820 168833820 C G MECOM Missense_Mutation p.E491Q 0.46 tolerated(0.16) probably_damaging(0.999) TCGA-FR-A7U8-06 3 9482200 9482200 A G SETD5 Missense_Mutation p.I210V 0.39 deleterious(0.02) probably_damaging(0.977) TCGA-FR-A7U8-06 4 126372455 126372455 C G FAT4 Silent p.A3428A 0.76 TCGA-FR-A7U8-06 5 140788164 140788164 A G PCDHGB6 Missense_Mutation p.Q132R 0.45 tolerated(0.8) benign(0.001) TCGA-FR-A7U8-06 5 14420053 14420053 G A TRIO Missense_Mutation p.G1709D 0.51 benign(0.234) TCGA-FR-A7U8-06 6 33289197 33289197 G A DAXX Missense_Mutation p.R119W 0.31 deleterious(0) probably_damaging(0.97) TCGA-FR-A7U8-06 8 101016218 101016218 C T RGS22 Missense_Mutation p.D855N 0.24 tolerated(0.09) benign(0.038) TCGA-FR-A7U8-06 8 10468733 10468733 C T RP1L1 Missense_Mutation p.E959K 0.52 possibly_damaging(0.821) TCGA-FR-A7U8-06 8 142238504 142238504 C T SLC45A4 5'UTR 0.24 TCGA-FR-A7U8-06 8 144103253 144103253 C A LY6E 3'UTR 0.36 TCGA-FR-A7U8-06 8 25234890 25234890 C T DOCK5 Missense_Mutation p.L1296F 0.43 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U8-06 9 131395794 131395794 G C SPTAN1 3'UTR 0.44 TCGA-FR-A7U8-06 9 97200693 97200694 - T HIATL1 Frame_Shift_Ins p.L95Ffs*11 0.35 TCGA-FR-A7U8-06 X 100880273 100880273 C T ARMCX3 Missense_Mutation p.R102C 0.82 tolerated(0.09) probably_damaging(0.973) TCGA-FR-A7U8-06 X 48895893 48895893 C T TFE3 Silent p.L203L 0.90 TCGA-FR-A7U9-06 10 102257936 102257936 G A SEC31B Silent p.L571L 0.12 TCGA-FR-A7U9-06 10 102748853 102748853 C T C10orf2 Missense_Mutation p.P296S 0.11 deleterious(0) possibly_damaging(0.573) TCGA-FR-A7U9-06 10 103869776 103869776 G T LDB1 Missense_Mutation p.L184M 0.32 tolerated(0.06) possibly_damaging(0.883) TCGA-FR-A7U9-06 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.39 deleterious(0.02) probably_damaging(0.984) TCGA-FR-A7U9-06 10 1054934 1054934 C A GTPBP4 Missense_Mutation p.R384S 0.11 tolerated(0.23) benign(0.246) TCGA-FR-A7U9-06 10 105813871 105813871 G A COL17A1 Nonsense_Mutation p.R584* 0.50 TCGA-FR-A7U9-06 10 106075406 106075406 G A ITPRIP Missense_Mutation p.T135I 0.25 tolerated(0.19) benign(0.002) TCGA-FR-A7U9-06 10 106907399 106907399 G A SORCS3 Missense_Mutation p.E443K 0.22 deleterious(0) possibly_damaging(0.728) TCGA-FR-A7U9-06 10 111881999 111881999 G A ADD3 Nonsense_Mutation p.W364* 0.13 TCGA-FR-A7U9-06 10 114176681 114176681 C T ACSL5 Silent p.F429F 0.36 TCGA-FR-A7U9-06 10 115351979 115351979 G A NRAP Missense_Mutation p.R1540W 0.11 deleterious(0) possibly_damaging(0.875) TCGA-FR-A7U9-06 10 115389389 115389389 C T NRAP Missense_Mutation p.M666I 0.19 tolerated(0.68) benign(0.003) TCGA-FR-A7U9-06 10 116201533 116201533 G A ABLIM1 Missense_Mutation p.P649L 0.08 tolerated(0.35) benign(0.001) TCGA-FR-A7U9-06 10 116417762 116417762 C T ABLIM1 Silent p.K66K 0.35 TCGA-FR-A7U9-06 10 116417969 116417969 G A ABLIM1 5'UTR 0.30 TCGA-FR-A7U9-06 10 120353724 120353724 C T PRLHR Missense_Mutation p.E345K 0.40 tolerated(0.16) benign(0.254) TCGA-FR-A7U9-06 10 121692547 121692547 C T SEC23IP Missense_Mutation p.S930F 0.10 deleterious(0.05) benign(0.309) TCGA-FR-A7U9-06 10 123662086 123662086 G A ATE1 Silent p.I211I 0.33 TCGA-FR-A7U9-06 10 123842718 123842718 C T TACC2 Missense_Mutation p.P235S 0.36 benign(0.114) TCGA-FR-A7U9-06 10 123845366 123845366 C T TACC2 Silent p.F1117F 0.11 TCGA-FR-A7U9-06 10 124392774 124392774 G A DMBT1 Silent p.G2026G 0.12 TCGA-FR-A7U9-06 10 124399773 124399773 C T DMBT1 Missense_Mutation p.S2258F 0.11 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 10 124402719 124402719 C T DMBT1 Silent p.F2349F 0.10 TCGA-FR-A7U9-06 10 127456214 127456214 C T MMP21 Missense_Mutation p.G433R 0.32 tolerated(0.07) possibly_damaging(0.651) TCGA-FR-A7U9-06 10 127461291 127461291 G A MMP21 Silent p.F242F 0.48 TCGA-FR-A7U9-06 10 128193371 128193371 G A C10orf90 Missense_Mutation p.P133L 0.21 tolerated(0.08) benign(0.202) TCGA-FR-A7U9-06 10 15646326 15646326 C T ITGA8 Missense_Mutation p.E667K 0.07 tolerated(0.31) possibly_damaging(0.79) TCGA-FR-A7U9-06 10 15650284 15650284 G A ITGA8 Missense_Mutation p.S520F 0.06 tolerated(0.06) possibly_damaging(0.722) TCGA-FR-A7U9-06 10 15760852 15760852 C T ITGA8 Missense_Mutation p.D86N 0.10 tolerated(0.51) benign(0.019) TCGA-FR-A7U9-06 10 16941165 16941165 G A CUBN Missense_Mutation p.H2810Y 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-FR-A7U9-06 10 16942713 16942713 G A CUBN Missense_Mutation p.S2774L 0.44 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 10 16961982 16961982 G A CUBN Silent p.F2267F 0.36 TCGA-FR-A7U9-06 10 17165672 17165672 A C CUBN Missense_Mutation p.V135G 0.30 tolerated(0.12) benign(0.231) TCGA-FR-A7U9-06 10 18331723 18331723 C T SLC39A12 Silent p.L679L 0.29 TCGA-FR-A7U9-06 10 18803964 18803964 G A CACNB2 Intron 0.34 TCGA-FR-A7U9-06 10 20508005 20508005 T G PLXDC2 Missense_Mutation p.I429R 0.24 deleterious(0.03) probably_damaging(0.926) TCGA-FR-A7U9-06 10 21112184 21112184 G A NEBL Missense_Mutation p.P639S 0.25 tolerated(0.58) benign(0.392) TCGA-FR-A7U9-06 10 23321946 23321946 T G ARMC3 Silent p.L801L 0.30 TCGA-FR-A7U9-06 10 24835089 24835089 C T KIAA1217 Missense_Mutation p.P1890S 0.25 tolerated(0.65) benign(0.076) TCGA-FR-A7U9-06 10 25312542 25312542 C T THNSL1 Silent p.S130S 0.34 TCGA-FR-A7U9-06 10 27537724 27537724 C T RP11-85G18.6 Intron 0.31 TCGA-FR-A7U9-06 10 28233882 28233882 G A ARMC4 Nonsense_Mutation p.Q466* 0.40 TCGA-FR-A7U9-06 10 31810567 31810567 G A ZEB1 Silent p.L769L 0.10 TCGA-FR-A7U9-06 10 37430875 37430875 C T ANKRD30A Silent p.F294F 0.13 TCGA-FR-A7U9-06 10 37505148 37505148 C T ANKRD30A Missense_Mutation p.S914F 0.23 tolerated(0.33) possibly_damaging(0.831) TCGA-FR-A7U9-06 10 43623649 43623649 G A RET Missense_Mutation p.D1093N 0.11 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-FR-A7U9-06 10 46965113 46965113 C T SYT15 Missense_Mutation p.E278K 0.15 tolerated(0.1) benign(0.216) TCGA-FR-A7U9-06 10 48388834 48388834 G A RBP3 Silent p.L682L 0.34 TCGA-FR-A7U9-06 10 49763556 49763556 G A ARHGAP22 Missense_Mutation p.P92S 0.24 tolerated(0.73) benign(0.015) TCGA-FR-A7U9-06 10 50118263 50118263 A C LRRC18 3'UTR 0.13 TCGA-FR-A7U9-06 10 50122117 50122117 C T LRRC18 Silent p.G28G 0.09 TCGA-FR-A7U9-06 10 50902677 50902677 G A C10orf53 Intron 0.43 TCGA-FR-A7U9-06 10 55566333 55566333 A T PCDH15 3'UTR 0.16 TCGA-FR-A7U9-06 10 61815672 61815672 G A ANK3 Missense_Mutation p.S4270F 0.28 probably_damaging(0.982) TCGA-FR-A7U9-06 10 61823961 61823961 G A ANK3 Silent p.F4135F 0.12 TCGA-FR-A7U9-06 10 61829952 61829952 C T ANK3 Missense_Mutation p.E3563K 0.22 benign(0.023) TCGA-FR-A7U9-06 10 61831151 61831151 C T ANK3 Missense_Mutation p.G3163E 0.43 probably_damaging(0.998) TCGA-FR-A7U9-06 10 67829139 67829139 C T CTNNA3 Missense_Mutation p.D696N 0.27 deleterious(0.03) unknown(0) TCGA-FR-A7U9-06 10 69299398 69299398 A G CTNNA3 Missense_Mutation p.F108L 0.41 deleterious(0) benign(0.418) TCGA-FR-A7U9-06 10 70451473 70451473 C A TET1 Missense_Mutation p.P2105T 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 10 72307100 72307100 C T PALD1 Silent p.H720H 0.26 TCGA-FR-A7U9-06 10 73550947 73550947 C T CDH23 5'Flank 0.38 TCGA-FR-A7U9-06 10 73569711 73569711 G A CDH23 Missense_Mutation p.D713N 0.09 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 10 74695480 74695480 C T PLA2G12B Silent p.L161L 0.18 TCGA-FR-A7U9-06 10 75896417 75896417 G A AP3M1 Silent p.L140L 0.16 TCGA-FR-A7U9-06 10 76855522 76855522 G A DUSP13 Nonsense_Mutation p.Q119* 0.41 TCGA-FR-A7U9-06 10 79579176 79579176 G A DLG5 Silent p.L1192L 0.49 TCGA-FR-A7U9-06 10 81317214 81317214 C T SFTPA2 Silent p.R166R 0.08 TCGA-FR-A7U9-06 10 81929110 81929110 G A ANXA11 Missense_Mutation p.A59V 0.17 tolerated(0.47) unknown(0) TCGA-FR-A7U9-06 10 86008773 86008773 G A RGR Nonsense_Mutation p.W115* 0.33 TCGA-FR-A7U9-06 10 863758 863758 G A LARP4B Silent p.F534F 0.27 TCGA-FR-A7U9-06 10 88911229 88911229 C T FAM35A Nonsense_Mutation p.Q40* 0.32 TCGA-FR-A7U9-06 10 88911854 88911854 C T FAM35A Missense_Mutation p.S248F 0.26 deleterious(0) probably_damaging(0.971) TCGA-FR-A7U9-06 10 95347054 95347054 G A FFAR4 Silent p.Q274Q 0.30 TCGA-FR-A7U9-06 10 95931177 95931177 C T PLCE1 Missense_Mutation p.S578F 0.25 deleterious(0) probably_damaging(0.972) TCGA-FR-A7U9-06 10 96495098 96495098 A C CYP2C18 Missense_Mutation p.N457T 0.09 tolerated(1) benign(0.003) TCGA-FR-A7U9-06 10 96540278 96540278 C T CYP2C19 Silent p.F168F 0.08 TCGA-FR-A7U9-06 10 96541718 96541718 G A CYP2C19 Silent p.R261R 0.20 TCGA-FR-A7U9-06 10 96827234 96827234 C T CYP2C8 Intron 0.09 TCGA-FR-A7U9-06 10 96827346 96827346 C T CYP2C8 Missense_Mutation p.G91R 0.09 deleterious(0.03) possibly_damaging(0.635) TCGA-FR-A7U9-06 10 97917986 97917986 C T ZNF518A RNA 0.21 TCGA-FR-A7U9-06 10 98064333 98064333 C T DNTT Missense_Mutation p.P27S 0.14 tolerated(0.75) benign(0.002) TCGA-FR-A7U9-06 10 98709021 98709021 C T LCOR Silent p.V69V 0.41 TCGA-FR-A7U9-06 10 99003874 99003874 G A ARHGAP19 Nonsense_Mutation p.Q346* 0.31 TCGA-FR-A7U9-06 10 99161108 99161108 C T RRP12 5'Flank 0.44 TCGA-FR-A7U9-06 11 100221562 100221562 G A CNTN5 Missense_Mutation p.G1054R 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 11 1011274 1011274 C T AP2A2 3'UTR 0.38 TCGA-FR-A7U9-06 11 101375512 101375512 C T TRPC6 Missense_Mutation p.R63K 0.24 tolerated_low_confidence(0.31) probably_damaging(0.977) TCGA-FR-A7U9-06 11 102743601 102743601 G A MMP12 RNA 0.26 TCGA-FR-A7U9-06 11 102820904 102820904 A C MMP13 Missense_Mutation p.C284W 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 11 103814348 103814348 C T PDGFD Missense_Mutation p.D202N 0.19 tolerated(0.15) benign(0.021) TCGA-FR-A7U9-06 11 103908304 103908304 G A DDI1 Missense_Mutation p.G252R 0.31 deleterious(0) probably_damaging(0.959) TCGA-FR-A7U9-06 11 105009794 105009794 G A CARD18 Missense_Mutation p.R7C 0.36 deleterious(0) possibly_damaging(0.846) TCGA-FR-A7U9-06 11 10521654 10521654 G A AMPD3 Missense_Mutation p.D536N 0.57 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 11 105774667 105774667 C A GRIA4 Missense_Mutation p.P338Q 0.22 deleterious(0.01) probably_damaging(0.917) TCGA-FR-A7U9-06 11 10582170 10582170 G A LYVE1 Missense_Mutation p.S192F 0.34 tolerated(0.11) benign(0.023) TCGA-FR-A7U9-06 11 107965608 107965608 C T CUL5 Missense_Mutation p.S546L 0.27 deleterious(0) probably_damaging(0.938) TCGA-FR-A7U9-06 11 108186834 108186834 C T ATM Silent p.I2064I 0.21 TCGA-FR-A7U9-06 11 112088599 112088599 G A BCO2 3'UTR 0.22 TCGA-FR-A7U9-06 11 113281632 113281632 G A DRD2 Silent p.I383I 0.21 TCGA-FR-A7U9-06 11 113295435 113295435 G T DRD2 Intron 0.18 TCGA-FR-A7U9-06 11 113934136 113934136 C T ZBTB16 Silent p.I38I 0.18 TCGA-FR-A7U9-06 11 113935121 113935121 G A ZBTB16 Missense_Mutation p.D367N 0.18 deleterious(0.04) possibly_damaging(0.815) TCGA-FR-A7U9-06 11 113935172 113935172 C T ZBTB16 Silent p.L384L 0.18 TCGA-FR-A7U9-06 11 114392687 114392687 C T NXPE1 3'UTR 0.12 TCGA-FR-A7U9-06 11 116707040 116707040 C T APOA1 Nonsense_Mutation p.W96* 0.17 TCGA-FR-A7U9-06 11 117772958 117772958 G A TMPRSS13 Missense_Mutation p.S567F 0.17 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-FR-A7U9-06 11 118014581 118014581 G A SCN4B Missense_Mutation p.H144Y 0.34 deleterious(0.01) benign(0.187) TCGA-FR-A7U9-06 11 118380661 118380661 A T KMT2A Splice_Site p.X3634_splice 0.26 TCGA-FR-A7U9-06 11 118895761 118895761 G A SLC37A4 Silent p.P405P 0.29 TCGA-FR-A7U9-06 11 119149241 119149241 C T CBL Missense_Mutation p.P417S 0.22 deleterious(0) probably_damaging(0.98) TCGA-FR-A7U9-06 11 120745937 120745937 G A GRIK4 Silent p.R383R 0.31 TCGA-FR-A7U9-06 11 121174225 121174225 C T SC5D Silent p.F47F 0.24 TCGA-FR-A7U9-06 11 121175079 121175079 C T SC5D Missense_Mutation p.R74C 0.23 tolerated(0.15) benign(0.368) TCGA-FR-A7U9-06 11 121420734 121420734 C T SORL1 Missense_Mutation p.S706F 0.15 deleterious(0.03) benign(0.238) TCGA-FR-A7U9-06 11 121476190 121476190 G A SORL1 Missense_Mutation p.D1620N 0.35 tolerated(0.44) probably_damaging(1) TCGA-FR-A7U9-06 11 121500260 121500260 G A SORL1 Missense_Mutation p.M2211I 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A7U9-06 11 123624374 123624374 G A OR6X1 Missense_Mutation p.P285S 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 11 123754825 123754825 G A TMEM225 Silent p.I140I 0.19 TCGA-FR-A7U9-06 11 123813580 123813580 C T OR6T1 Silent p.R322R 0.26 TCGA-FR-A7U9-06 11 123909001 123909001 G A OR10G7 Silent p.A236A 0.19 TCGA-FR-A7U9-06 11 124012338 124012338 C T VWA5A Missense_Mutation p.P638L 0.20 tolerated(0.29) benign(0.001) TCGA-FR-A7U9-06 11 124180261 124180261 C T OR8D1 Silent p.A134A 0.39 TCGA-FR-A7U9-06 11 124266767 124266767 C T OR8B3 Missense_Mutation p.G161R 0.26 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FR-A7U9-06 11 124310943 124310943 G A OR8B8 Silent p.I13I 0.23 TCGA-FR-A7U9-06 11 124440490 124440490 G A OR8A1 Missense_Mutation p.E176K 0.23 deleterious(0) possibly_damaging(0.72) TCGA-FR-A7U9-06 11 124793283 124793283 G A HEPACAM Silent p.L252L 0.20 TCGA-FR-A7U9-06 11 125301095 125301095 C T PKNOX2 Missense_Mutation p.S409F 0.34 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-FR-A7U9-06 11 125525149 125525149 C T CHEK1 Silent p.F455F 0.24 TCGA-FR-A7U9-06 11 1271122 1271122 C T MUC5B Missense_Mutation p.P4338S 0.33 benign(0.001) TCGA-FR-A7U9-06 11 129748401 129748401 G A NFRKB Silent p.L499L 0.19 TCGA-FR-A7U9-06 11 132180057 132180057 A C NTM Missense_Mutation p.K238T 0.29 tolerated(0.57) benign(0.23) TCGA-FR-A7U9-06 11 134181006 134181006 C A GLB1L3 Missense_Mutation p.P410H 0.26 tolerated(0.07) benign(0.056) TCGA-FR-A7U9-06 11 17112912 17112912 C T PIK3C2A Missense_Mutation p.R1616Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 11 17409489 17409489 C T KCNJ11 Silent p.R50R 0.33 TCGA-FR-A7U9-06 11 17741434 17741434 C T MYOD1 Silent p.F35F 0.40 TCGA-FR-A7U9-06 11 17757952 17757952 G A KCNC1 Missense_Mutation p.D135N 0.42 tolerated(0.18) benign(0.005) TCGA-FR-A7U9-06 11 18159829 18159829 C T MRGPRX3 3'UTR 0.50 TCGA-FR-A7U9-06 11 1856635 1856635 G A SYT8 Silent p.R82R 0.44 TCGA-FR-A7U9-06 11 1857820 1857820 C T SYT8 Nonsense_Mutation p.Q242* 0.27 TCGA-FR-A7U9-06 11 18762331 18762331 G A PTPN5 Missense_Mutation p.S245F 0.39 deleterious(0) possibly_damaging(0.895) TCGA-FR-A7U9-06 11 1904719 1904719 G A LSP1 Missense_Mutation p.E271K 0.50 deleterious_low_confidence(0.02) benign(0.093) TCGA-FR-A7U9-06 11 193786 193786 G A SCGB1C1 Missense_Mutation p.E44K 0.19 deleterious(0.01) possibly_damaging(0.689) TCGA-FR-A7U9-06 11 2356587 2356587 C T CD81-AS1 Intron 0.25 TCGA-FR-A7U9-06 11 2436216 2436216 C T TRPM5 Missense_Mutation p.S514N 0.31 tolerated(0.14) probably_damaging(0.957) TCGA-FR-A7U9-06 11 36597973 36597973 C T RAG1 Missense_Mutation p.S1040L 0.43 deleterious_low_confidence(0.04) benign(0) TCGA-FR-A7U9-06 11 36614199 36614199 T A RAG2 Missense_Mutation p.K507I 0.37 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 11 3681455 3681455 C T ART1 Missense_Mutation p.P236S 0.40 deleterious(0.04) possibly_damaging(0.897) TCGA-FR-A7U9-06 11 44219558 44219558 C T EXT2 Silent p.N528N 0.26 TCGA-FR-A7U9-06 11 44219559 44219559 C T EXT2 Missense_Mutation p.P529S 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A7U9-06 11 46397621 46397621 C T DGKZ Missense_Mutation p.P861S 0.24 tolerated(0.06) possibly_damaging(0.53) TCGA-FR-A7U9-06 11 47746168 47746168 G A FNBP4 Missense_Mutation p.P724L 0.35 tolerated(0.1) possibly_damaging(0.801) TCGA-FR-A7U9-06 11 4790726 4790726 G A OR51F1 Missense_Mutation p.S141F 0.46 tolerated(0.08) benign(0.013) TCGA-FR-A7U9-06 11 49974029 49974029 C T OR4C13 Missense_Mutation p.P19S 0.28 deleterious_low_confidence(0.04) benign(0.128) TCGA-FR-A7U9-06 11 5080543 5080543 A G OR52E2 Silent p.F105F 0.53 TCGA-FR-A7U9-06 11 5142422 5142422 C T OR52A4 RNA 0.23 TCGA-FR-A7U9-06 11 5462260 5462260 G T OR51I1 Missense_Mutation p.P162H 0.49 deleterious(0) probably_damaging(0.994) TCGA-FR-A7U9-06 11 55065045 55065045 G A TRIM51HP RNA 0.24 TCGA-FR-A7U9-06 11 552571 552571 C T LRRC56 Missense_Mutation p.P395L 0.27 tolerated(0.34) benign(0.097) TCGA-FR-A7U9-06 11 55594749 55594749 G A OR5L2 Missense_Mutation p.D19N 0.18 tolerated(0.14) possibly_damaging(0.543) TCGA-FR-A7U9-06 11 55595239 55595239 C T OR5L2 Missense_Mutation p.P182L 0.18 tolerated(0.06) benign(0.255) TCGA-FR-A7U9-06 11 5566079 5566079 G A OR52H1 Silent p.S225S 0.36 TCGA-FR-A7U9-06 11 55735475 55735475 G A OR10AG1 Silent p.F155F 0.38 TCGA-FR-A7U9-06 11 55889974 55889974 G A OR8H3 Silent p.G42G 0.18 TCGA-FR-A7U9-06 11 55890100 55890100 G A OR8H3 Silent p.A84A 0.15 TCGA-FR-A7U9-06 11 55999927 55999927 G A OR5T2 Silent p.I245I 0.18 TCGA-FR-A7U9-06 11 56143135 56143135 T A OR8U1 Missense_Mutation p.F12L 0.08 deleterious(0) benign(0.076) TCGA-FR-A7U9-06 11 56143728 56143728 C T OR8U1 Missense_Mutation p.S210F 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 11 56185025 56185025 G A OR5R1 Silent p.I228I 0.27 TCGA-FR-A7U9-06 11 56237794 56237794 G A OR5M3 Silent p.F60F 0.24 TCGA-FR-A7U9-06 11 56309817 56309817 C T OR5M11 Silent p.%3D 0.15 TCGA-FR-A7U9-06 11 56344278 56344278 C T OR5M10 Missense_Mutation p.G307E 0.27 tolerated(0.66) benign(0.002) TCGA-FR-A7U9-06 11 56949442 56949442 C T LRRC55 Silent p.S25S 0.33 TCGA-FR-A7U9-06 11 57135505 57135505 G A P2RX3 Missense_Mutation p.E289K 0.27 tolerated(0.58) possibly_damaging(0.582) TCGA-FR-A7U9-06 11 57310661 57310661 G A SMTNL1 Silent p.R200R 0.29 TCGA-FR-A7U9-06 11 5758007 5758007 C T OR56B1 Silent p.I87I 0.34 TCGA-FR-A7U9-06 11 5758544 5758544 G A OR56B1 Silent p.V266V 0.35 TCGA-FR-A7U9-06 11 57958733 57958733 C T OR9Q2 Silent p.F257F 0.25 TCGA-FR-A7U9-06 11 57970917 57970917 C T OR1S2 Missense_Mutation p.G246E 0.28 deleterious(0) probably_damaging(0.938) TCGA-FR-A7U9-06 11 58035282 58035282 G A OR10W1 Silent p.L17L 0.24 TCGA-FR-A7U9-06 11 5809248 5809248 C T OR52N1 Missense_Mutation p.G267R 0.47 deleterious(0.02) possibly_damaging(0.739) TCGA-FR-A7U9-06 11 58207622 58207622 C T OR5B12 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0.02) benign(0.41) TCGA-FR-A7U9-06 11 58295043 58295043 G A LPXN Missense_Mutation p.H354Y 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 11 58322355 58322355 A G LPXN Silent p.L98L 0.12 TCGA-FR-A7U9-06 11 5878729 5878729 G A OR52E8 Silent p.F68F 0.37 TCGA-FR-A7U9-06 11 59189877 59189877 G A OR5A2 Missense_Mutation p.P184S 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A7U9-06 11 59245289 59245289 C T OR4D10 Silent p.P129P 0.20 TCGA-FR-A7U9-06 11 61135218 61135218 C T TMEM138 Intron 0.17 TCGA-FR-A7U9-06 11 612586 612586 G A IRF7 3'UTR 0.32 TCGA-FR-A7U9-06 11 61404238 61404238 C T RPLP0P2 RNA 0.36 TCGA-FR-A7U9-06 11 62996012 62996012 G A SLC22A25 Missense_Mutation p.P143S 0.29 tolerated(1) benign(0.003) TCGA-FR-A7U9-06 11 63141376 63141376 G A SLC22A9 Nonsense_Mutation p.W224* 0.20 TCGA-FR-A7U9-06 11 64012177 64012177 G A PPP1R14B 3'UTR 0.22 TCGA-FR-A7U9-06 11 64525338 64525338 C T PYGM Silent p.E191E 0.36 TCGA-FR-A7U9-06 11 65713146 65713146 G A TSGA10IP RNA 0.39 TCGA-FR-A7U9-06 11 65780884 65780884 G A CST6 3'UTR 0.16 TCGA-FR-A7U9-06 11 66191761 66191761 C T NPAS4 Missense_Mutation p.S467F 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.467) TCGA-FR-A7U9-06 11 66475672 66475672 G A SPTBN2 Silent p.F430F 0.20 TCGA-FR-A7U9-06 11 66802306 66802306 G A SYT12 Silent p.E75E 0.13 TCGA-FR-A7U9-06 11 67235022 67235022 G A TMEM134 Silent p.S93S 0.17 TCGA-FR-A7U9-06 11 70331736 70331736 G T SHANK2 Silent p.P1555P 0.28 TCGA-FR-A7U9-06 11 71906728 71906728 G A FOLR1 Missense_Mutation p.E144K 0.38 tolerated(0.06) benign(0.151) TCGA-FR-A7U9-06 11 71948544 71948544 C T INPPL1 Missense_Mutation p.R1086C 0.29 deleterious(0.01) possibly_damaging(0.689) TCGA-FR-A7U9-06 11 72946013 72946013 C T P2RY2 Missense_Mutation p.S270F 0.15 tolerated(0.52) benign(0.056) TCGA-FR-A7U9-06 11 74009284 74009284 C T P4HA3 Silent p.L230L 0.39 TCGA-FR-A7U9-06 11 74013444 74013444 G A P4HA3 Silent p.L179L 0.22 TCGA-FR-A7U9-06 11 74340263 74340263 G A POLD3 Missense_Mutation p.G301R 0.17 tolerated(0.55) benign(0.199) TCGA-FR-A7U9-06 11 74415537 74415537 T C CHRDL2 Missense_Mutation p.K249E 0.38 deleterious(0) possibly_damaging(0.72) TCGA-FR-A7U9-06 11 74914003 74914003 G A SLCO2B1 Silent p.R607R 0.25 TCGA-FR-A7U9-06 11 75851788 75851788 T A UVRAG Silent p.V477V 0.27 TCGA-FR-A7U9-06 11 76370776 76370776 C T LRRC32 Missense_Mutation p.G621R 0.27 tolerated(0.16) benign(0.006) TCGA-FR-A7U9-06 11 76910678 76910678 C T MYO7A Missense_Mutation p.P1556L 0.19 tolerated(0.78) benign(0) TCGA-FR-A7U9-06 11 76944069 76944069 C T GDPD4 Splice_Site p.X463_splice 0.29 TCGA-FR-A7U9-06 11 78443510 78443510 C T TENM4 Missense_Mutation p.E997K 0.22 deleterious(0) benign(0.063) TCGA-FR-A7U9-06 11 78467972 78467972 G A TENM4 Silent p.I878I 0.16 TCGA-FR-A7U9-06 11 7847514 7847514 C T OR5P3 Silent p.G2G 0.24 TCGA-FR-A7U9-06 11 78497944 78497944 G A TENM4 Silent p.I788I 0.38 TCGA-FR-A7U9-06 11 78497982 78497982 C T TENM4 Missense_Mutation p.E776K 0.29 tolerated(0.4) possibly_damaging(0.679) TCGA-FR-A7U9-06 11 89431634 89431634 G A FOLH1B RNA 0.18 TCGA-FR-A7U9-06 11 92087287 92087287 C T FAT3 Missense_Mutation p.S670L 0.20 probably_damaging(0.946) TCGA-FR-A7U9-06 11 92533893 92533893 G T FAT3 Missense_Mutation p.V2572L 0.35 benign(0.029) TCGA-FR-A7U9-06 11 93088610 93088610 G A CCDC67 Missense_Mutation p.D35N 0.17 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 11 94039857 94039857 G A FOLR4 Nonsense_Mutation p.W106* 0.26 TCGA-FR-A7U9-06 11 94113690 94113690 G A GPR83 Silent p.V299V 0.20 TCGA-FR-A7U9-06 11 94704186 94704186 G A CWC15 Silent p.D96D 0.31 TCGA-FR-A7U9-06 11 94862486 94862486 C T ENDOD1 Missense_Mutation p.L416F 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A7U9-06 11 95712455 95712455 G A MAML2 Missense_Mutation p.P1043L 0.19 unknown(0) TCGA-FR-A7U9-06 12 100169408 100169408 G A ANKS1B Silent p.V293V 0.21 TCGA-FR-A7U9-06 12 100480068 100480068 G A UHRF1BP1L Missense_Mutation p.P364S 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 102796285 102796285 C T IGF1 Silent p.%3D 0.22 TCGA-FR-A7U9-06 12 104056753 104056753 G A STAB2 Missense_Mutation p.E667K 0.14 tolerated(0.2) possibly_damaging(0.544) TCGA-FR-A7U9-06 12 104131508 104131508 G A STAB2 Missense_Mutation p.D1883N 0.21 tolerated(0.22) benign(0.052) TCGA-FR-A7U9-06 12 10467327 10467327 G A KLRD1 Missense_Mutation p.G159R 0.22 tolerated(0.55) benign(0.028) TCGA-FR-A7U9-06 12 106712195 106712195 C T TCP11L2 Missense_Mutation p.P123S 0.14 deleterious(0) probably_damaging(0.993) TCGA-FR-A7U9-06 12 108011145 108011145 G A BTBD11 Silent p.R721R 0.32 TCGA-FR-A7U9-06 12 109700200 109700200 A G ACACB Missense_Mutation p.K2238R 0.25 deleterious(0.03) benign(0.205) TCGA-FR-A7U9-06 12 109865368 109865368 G A MYO1H Silent p.R626R 0.12 TCGA-FR-A7U9-06 12 110820702 110820702 C T ANAPC7 Missense_Mutation p.G328E 0.17 tolerated(0.09) possibly_damaging(0.795) TCGA-FR-A7U9-06 12 110820703 110820703 C T ANAPC7 Missense_Mutation p.G328R 0.18 tolerated(0.07) possibly_damaging(0.896) TCGA-FR-A7U9-06 12 111087190 111087190 C T HVCN1 3'UTR 0.23 TCGA-FR-A7U9-06 12 111168529 111168529 G A PPP1CC Missense_Mutation p.L75F 0.19 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-FR-A7U9-06 12 111290675 111290675 A C CCDC63 5'UTR 0.25 TCGA-FR-A7U9-06 12 111652007 111652007 G A CUX2 Missense_Mutation p.E23K 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A7U9-06 12 111908038 111908038 G A ATXN2 Missense_Mutation p.H1064Y 0.19 probably_damaging(0.995) TCGA-FR-A7U9-06 12 112622380 112622380 G A HECTD4 Missense_Mutation p.P3318S 0.30 benign(0) TCGA-FR-A7U9-06 12 113312944 113312944 G A RPH3A Silent p.Q284Q 0.40 TCGA-FR-A7U9-06 12 11420983 11420983 T C PRB3 Missense_Mutation p.Q67R 0.21 tolerated(0.98) unknown(0) TCGA-FR-A7U9-06 12 11420984 11420984 G T PRB3 Missense_Mutation p.Q67K 0.21 tolerated(1) unknown(0) TCGA-FR-A7U9-06 12 116446560 116446560 G A MED13L Missense_Mutation p.S553F 0.20 deleterious(0.01) benign(0.184) TCGA-FR-A7U9-06 12 117672446 117672446 G A NOS1 Silent p.I1087I 0.23 TCGA-FR-A7U9-06 12 117693801 117693801 G A NOS1 Missense_Mutation p.P858L 0.14 tolerated(0.3) benign(0.043) TCGA-FR-A7U9-06 12 117705905 117705905 G A NOS1 Silent p.S628S 0.20 TCGA-FR-A7U9-06 12 117977534 117977534 G A KSR2 Silent p.F559F 0.09 TCGA-FR-A7U9-06 12 119954500 119954500 G A CCDC60 Missense_Mutation p.R319K 0.26 tolerated(1) benign(0.004) TCGA-FR-A7U9-06 12 119957972 119957972 G A CCDC60 Missense_Mutation p.E339K 0.11 tolerated(0.37) benign(0.167) TCGA-FR-A7U9-06 12 120436482 120436482 C T CCDC64 Missense_Mutation p.S196L 0.29 tolerated(0.05) benign(0.001) TCGA-FR-A7U9-06 12 121157743 121157743 C T UNC119B Missense_Mutation p.P222S 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 124330582 124330582 G A DNAH10 Missense_Mutation p.D1781N 0.28 probably_damaging(0.922) TCGA-FR-A7U9-06 12 12496228 12496228 C T MANSC1 Silent p.G7G 0.20 TCGA-FR-A7U9-06 12 126004156 126004156 C T TMEM132B Silent p.I421I 0.21 TCGA-FR-A7U9-06 12 126128641 126128641 C T TMEM132B Missense_Mutation p.S481F 0.16 tolerated(0.08) benign(0.394) TCGA-FR-A7U9-06 12 126138791 126138791 G A TMEM132B Nonsense_Mutation p.W924* 0.28 TCGA-FR-A7U9-06 12 129569358 129569358 C T TMEM132D Intron 0.27 TCGA-FR-A7U9-06 12 130927065 130927065 C T RIMBP2 Missense_Mutation p.G261R 0.22 tolerated(0.25) benign(0.003) TCGA-FR-A7U9-06 12 133201379 133201379 G A POLE Silent p.I2255I 0.18 TCGA-FR-A7U9-06 12 133732584 133732584 C T ZNF10 Missense_Mutation p.S251L 0.16 tolerated(0.11) benign(0.006) TCGA-FR-A7U9-06 12 133733329 133733329 C T ZNF10 Silent p.I499I 0.23 TCGA-FR-A7U9-06 12 13716952 13716952 C T GRIN2B Missense_Mutation p.E1074K 0.23 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 12 13768585 13768585 C T GRIN2B Missense_Mutation p.E448K 0.21 tolerated(0.23) benign(0.041) TCGA-FR-A7U9-06 12 13906258 13906258 G A GRIN2B Silent p.L335L 0.13 TCGA-FR-A7U9-06 12 14822699 14822699 G A GUCY2C Silent p.F413F 0.25 TCGA-FR-A7U9-06 12 14834395 14834395 C T GUCY2C Missense_Mutation p.E210K 0.19 tolerated(0.17) possibly_damaging(0.72) TCGA-FR-A7U9-06 12 15091439 15091439 C T ERP27 Missense_Mutation p.E2K 0.17 tolerated_low_confidence(0.16) benign(0.016) TCGA-FR-A7U9-06 12 15677838 15677838 C T PTPRO Missense_Mutation p.S661F 0.18 deleterious(0.03) possibly_damaging(0.871) TCGA-FR-A7U9-06 12 1755194 1755194 G A WNT5B Missense_Mutation p.D286N 0.23 tolerated(0.17) probably_damaging(0.998) TCGA-FR-A7U9-06 12 18435659 18435659 G A PIK3C2G Missense_Mutation p.G215E 0.21 tolerated(0.25) benign(0.001) TCGA-FR-A7U9-06 12 18716366 18716366 C T PIK3C2G Missense_Mutation p.S1238L 0.21 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 12 18854589 18854589 C T PLCZ1 Intron 0.23 TCGA-FR-A7U9-06 12 18891447 18891447 G A CAPZA3 Missense_Mutation p.R82Q 0.25 deleterious(0.03) probably_damaging(0.968) TCGA-FR-A7U9-06 12 1994028 1994028 C T CACNA2D4 Missense_Mutation p.G393E 0.32 deleterious(0) probably_damaging(0.955) TCGA-FR-A7U9-06 12 2074806 2074806 G A DCP1B Missense_Mutation p.S147F 0.12 deleterious(0) probably_damaging(0.954) TCGA-FR-A7U9-06 12 20833197 20833197 G A PDE3A Missense_Mutation p.D1140N 0.19 tolerated_low_confidence(1) benign(0) TCGA-FR-A7U9-06 12 20903807 20903807 C T SLCO1C1 Missense_Mutation p.S666L 0.19 tolerated_low_confidence(0.87) benign(0) TCGA-FR-A7U9-06 12 21175920 21175920 C T SLCO1B7 Silent p.S159S 0.21 TCGA-FR-A7U9-06 12 21199999 21199999 C T SLCO1B7 Missense_Mutation p.S281F 0.10 deleterious(0) benign(0.068) TCGA-FR-A7U9-06 12 21207414 21207414 T C SLCO1B7 Missense_Mutation p.V462A 0.31 tolerated(0.69) benign(0.009) TCGA-FR-A7U9-06 12 21331569 21331569 C T SLCO1B1 Missense_Mutation p.R181C 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 21918875 21918875 A G KCNJ8 Missense_Mutation p.C353R 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 12 21954093 21954093 G A ABCC9 Missense_Mutation p.T1512M 0.11 deleterious(0) benign(0.378) TCGA-FR-A7U9-06 12 22068672 22068672 C T ABCC9 Missense_Mutation p.G249E 0.18 deleterious(0) probably_damaging(0.988) TCGA-FR-A7U9-06 12 2714870 2714870 C T CACNA1C Missense_Mutation p.A1045V 0.18 deleterious(0) possibly_damaging(0.867) TCGA-FR-A7U9-06 12 32945275 32945275 T A PKP2 3'UTR 0.30 TCGA-FR-A7U9-06 12 33031217 33031217 G A PKP2 Silent p.I199I 0.31 TCGA-FR-A7U9-06 12 39980045 39980045 C T ABCD2 Silent p.V567V 0.22 TCGA-FR-A7U9-06 12 41365288 41365288 C T CNTN1 Intron 0.29 TCGA-FR-A7U9-06 12 41831741 41831741 C G PDZRN4 Intron 0.23 TCGA-FR-A7U9-06 12 432368 432368 G A KDM5A Missense_Mutation p.R719C 0.35 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 12 45059354 45059354 C T NELL2 Missense_Mutation p.E503K 0.17 tolerated(0.33) probably_damaging(0.964) TCGA-FR-A7U9-06 12 4543519 4543519 G A FGF6 Silent p.L163L 0.13 TCGA-FR-A7U9-06 12 46242722 46242722 C T ARID2 Silent p.L562L 0.21 TCGA-FR-A7U9-06 12 4705327 4705327 C T DYRK4 Missense_Mutation p.H99Y 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 48371144 48371144 G A COL2A1 Missense_Mutation p.P1078S 0.28 unknown(0) TCGA-FR-A7U9-06 12 4854623 4854623 G A GALNT8 Missense_Mutation p.E297K 0.36 deleterious(0) probably_damaging(0.964) TCGA-FR-A7U9-06 12 49230017 49230017 G A DDX23 Silent p.P423P 0.19 TCGA-FR-A7U9-06 12 49485064 49485064 C T DHH Missense_Mutation p.D138N 0.20 tolerated(0.2) probably_damaging(0.935) TCGA-FR-A7U9-06 12 5021414 5021414 C T KCNA1 Silent p.I290I 0.25 TCGA-FR-A7U9-06 12 51681925 51681925 C T BIN2 Silent p.K521K 0.16 TCGA-FR-A7U9-06 12 51847394 51847394 C T SLC4A8 Missense_Mutation p.S162L 0.25 deleterious(0) possibly_damaging(0.785) TCGA-FR-A7U9-06 12 51853873 51853873 G A SLC4A8 Missense_Mutation p.E332K 0.29 deleterious(0) possibly_damaging(0.591) TCGA-FR-A7U9-06 12 52156311 52156311 G A SCN8A Missense_Mutation p.E799K 0.20 deleterious(0) possibly_damaging(0.773) TCGA-FR-A7U9-06 12 52309042 52309042 C T ACVRL1 Missense_Mutation p.S269L 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 12 52567426 52567426 C T KRT80 Silent p.A263A 0.23 TCGA-FR-A7U9-06 12 52629086 52629086 G A KRT7 Missense_Mutation p.D158N 0.14 deleterious(0.02) benign(0.133) TCGA-FR-A7U9-06 12 52943818 52943818 C T KRT71 Silent p.K217K 0.19 TCGA-FR-A7U9-06 12 53012180 53012180 G A KRT73 Silent p.F43F 0.20 TCGA-FR-A7U9-06 12 53162463 53162463 G A KRT76 3'UTR 0.20 TCGA-FR-A7U9-06 12 53171109 53171109 T C KRT76 5'UTR 0.17 TCGA-FR-A7U9-06 12 53189230 53189230 C T KRT3 Silent p.R199R 0.21 TCGA-FR-A7U9-06 12 53819643 53819643 C T AMHR2 Silent p.S264S 0.21 TCGA-FR-A7U9-06 12 54901649 54901649 G A NCKAP1L Missense_Mutation p.E107K 0.19 deleterious(0) probably_damaging(0.981) TCGA-FR-A7U9-06 12 54913057 54913057 C T NCKAP1L Silent p.S522S 0.19 TCGA-FR-A7U9-06 12 55356397 55356397 C T TESPA1 Missense_Mutation p.E429K 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-FR-A7U9-06 12 55356754 55356754 T C TESPA1 Missense_Mutation p.N310D 0.21 tolerated(0.06) benign(0.134) TCGA-FR-A7U9-06 12 55368202 55368202 C T TESPA1 Missense_Mutation p.D49N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A7U9-06 12 55420927 55420927 C T NEUROD4 Missense_Mutation p.S235L 0.25 tolerated(0.28) benign(0.184) TCGA-FR-A7U9-06 12 55726221 55726221 C T OR6C3 Missense_Mutation p.S246F 0.15 deleterious_low_confidence(0) benign(0.077) TCGA-FR-A7U9-06 12 55794995 55794995 C T OR6C65 Missense_Mutation p.S228F 0.19 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-FR-A7U9-06 12 55795186 55795186 A T OR6C65 Missense_Mutation p.N292Y 0.38 deleterious_low_confidence(0.01) benign(0.167) TCGA-FR-A7U9-06 12 55846912 55846912 G A OR6C2 Silent p.R305R 0.21 TCGA-FR-A7U9-06 12 55886320 55886320 G A OR6C68 Silent p.L53L 0.23 TCGA-FR-A7U9-06 12 55887015 55887015 C T OR6C68 Missense_Mutation p.S285F 0.16 deleterious_low_confidence(0) benign(0.107) TCGA-FR-A7U9-06 12 56031222 56031222 C T OR10P1 Silent p.L183L 0.37 TCGA-FR-A7U9-06 12 56847477 56847477 G A MIP Silent p.F141F 0.17 TCGA-FR-A7U9-06 12 5687134 5687134 G A ANO2 Missense_Mutation p.S809F 0.18 deleterious(0) probably_damaging(0.982) TCGA-FR-A7U9-06 12 56998871 56998871 G A BAZ2A Missense_Mutation p.P914S 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-FR-A7U9-06 12 57112522 57112522 G A NACA Intron 0.31 TCGA-FR-A7U9-06 12 58087946 58087946 T A OS9 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.971) TCGA-FR-A7U9-06 12 59272796 59272796 G A LRIG3 Silent p.A631A 0.20 TCGA-FR-A7U9-06 12 59307815 59307815 C T LRIG3 Missense_Mutation p.E111K 0.24 tolerated(0.17) benign(0.009) TCGA-FR-A7U9-06 12 6076656 6076656 G A VWF Missense_Mutation p.P2628L 0.27 deleterious(0) probably_damaging(0.975) TCGA-FR-A7U9-06 12 6127932 6127932 G A VWF Missense_Mutation p.P1551L 0.27 deleterious(0) benign(0.067) TCGA-FR-A7U9-06 12 62148702 62148702 G A FAM19A2 Silent p.F70F 0.22 TCGA-FR-A7U9-06 12 62785024 62785024 C T USP15 Missense_Mutation p.S683L 0.21 tolerated(0.16) possibly_damaging(0.516) TCGA-FR-A7U9-06 12 65514224 65514224 C T WIF1 Missense_Mutation p.M87I 0.18 tolerated(0.12) benign(0.121) TCGA-FR-A7U9-06 12 6637023 6637023 C T NCAPD2 Silent p.I996I 0.18 TCGA-FR-A7U9-06 12 6772291 6772291 C T ING4 5'UTR 0.17 TCGA-FR-A7U9-06 12 69753684 69753684 G A YEATS4 5'UTR 0.23 TCGA-FR-A7U9-06 12 70794033 70794033 G A KCNMB4 Silent p.L127L 0.22 TCGA-FR-A7U9-06 12 70938366 70938366 A C PTPRB Missense_Mutation p.F1822C 0.27 tolerated(0.07) benign(0.132) TCGA-FR-A7U9-06 12 7510031 7510031 C T CD163L1 Missense_Mutation p.G1444E 0.10 tolerated(1) benign(0) TCGA-FR-A7U9-06 12 75875735 75875735 A G GLIPR1 Missense_Mutation p.N99S 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 7640585 7640585 A G CD163 Missense_Mutation p.F507L 0.24 tolerated(0.06) benign(0.308) TCGA-FR-A7U9-06 12 7843151 7843151 C T GDF3 Missense_Mutation p.G140R 0.23 deleterious(0.03) benign(0.166) TCGA-FR-A7U9-06 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.23 tolerated(0.06) possibly_damaging(0.542) TCGA-FR-A7U9-06 12 7945554 7945554 C T NANOG Missense_Mutation p.L54F 0.22 tolerated(0.1) benign(0.013) TCGA-FR-A7U9-06 12 80750683 80750683 C T OTOGL Missense_Mutation p.S1994F 0.45 deleterious(0.02) benign(0.258) TCGA-FR-A7U9-06 12 85441135 85441135 C T LRRIQ1 Missense_Mutation p.L189F 0.16 deleterious(0.04) probably_damaging(0.995) TCGA-FR-A7U9-06 12 88471668 88471668 G A CEP290 Missense_Mutation p.L1798F 0.50 possibly_damaging(0.718) TCGA-FR-A7U9-06 12 9261952 9261952 G A A2M Silent p.I241I 0.24 TCGA-FR-A7U9-06 12 9268366 9268366 C T A2M Missense_Mutation p.G27E 0.33 tolerated(0.21) benign(0.266) TCGA-FR-A7U9-06 12 95656774 95656774 C T VEZT Silent p.P117P 0.25 TCGA-FR-A7U9-06 12 96131730 96131730 C T NTN4 Missense_Mutation p.G260S 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 12 96415987 96415987 G A LTA4H Missense_Mutation p.R175C 0.15 deleterious(0.01) benign(0.106) TCGA-FR-A7U9-06 12 97093816 97093816 G A C12orf55 Missense_Mutation p.G2140E 0.19 deleterious(0) benign(0.002) TCGA-FR-A7U9-06 12 97114306 97114306 G A C12orf55 Missense_Mutation p.A2310T 0.12 deleterious(0.02) benign(0.001) TCGA-FR-A7U9-06 13 101757269 101757269 T C NALCN Missense_Mutation p.K871R 0.26 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 13 103718411 103718411 C T SLC10A2 Silent p.K63K 0.16 TCGA-FR-A7U9-06 13 114780745 114780745 G A RASA3 Missense_Mutation p.P449S 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 13 20567679 20567679 C T ZMYM2 Missense_Mutation p.S156F 0.36 deleterious_low_confidence(0) benign(0.158) TCGA-FR-A7U9-06 13 20796920 20796920 G A GJB6 Missense_Mutation p.H234Y 0.40 tolerated(0.67) benign(0.025) TCGA-FR-A7U9-06 13 21557413 21557413 C A LATS2 Missense_Mutation p.G811V 0.29 deleterious(0) probably_damaging(0.965) TCGA-FR-A7U9-06 13 23808813 23808813 T A SGCG Missense_Mutation p.L87I 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 13 25349016 25349016 C T RNF17 Silent p.S97S 0.25 TCGA-FR-A7U9-06 13 28631583 28631583 C T FLT3 Missense_Mutation p.V129I 0.38 tolerated(0.11) benign(0.009) TCGA-FR-A7U9-06 13 31540506 31540506 C T TEX26 Missense_Mutation p.S206L 0.31 deleterious(0.04) possibly_damaging(0.732) TCGA-FR-A7U9-06 13 32907093 32907093 C T BRCA2 Missense_Mutation p.P493L 0.39 tolerated(0.89) benign(0.003) TCGA-FR-A7U9-06 13 33635849 33635849 G A KL Missense_Mutation p.G878E 0.41 tolerated(0.15) benign(0.024) TCGA-FR-A7U9-06 13 38357297 38357297 A T TRPC4 Nonsense_Mutation p.Y58* 0.32 TCGA-FR-A7U9-06 13 39454942 39454942 C T FREM2 3'UTR 0.33 TCGA-FR-A7U9-06 13 42874511 42874511 C T AKAP11 Silent p.S543S 0.36 TCGA-FR-A7U9-06 13 47279266 47279266 C T LRCH1 Silent p.A488A 0.33 TCGA-FR-A7U9-06 13 49050957 49050957 G A RB1 Missense_Mutation p.G881R 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A7U9-06 13 49781489 49781489 C T FNDC3A Silent p.S1185S 0.32 TCGA-FR-A7U9-06 13 49796392 49796392 G A MLNR Missense_Mutation p.R373K 0.39 tolerated(0.62) benign(0.001) TCGA-FR-A7U9-06 13 50087300 50087300 T C PHF11 Silent p.L108L 0.59 TCGA-FR-A7U9-06 13 72147132 72147132 G A DACH1 Missense_Mutation p.P382L 0.26 probably_damaging(1) TCGA-FR-A7U9-06 13 76397772 76397772 C T LMO7 Silent p.T671T 0.41 TCGA-FR-A7U9-06 13 77640212 77640212 C T MYCBP2 Missense_Mutation p.R4118Q 0.28 probably_damaging(0.96) TCGA-FR-A7U9-06 13 77669613 77669613 G C MYCBP2 Missense_Mutation p.P3322R 0.42 probably_damaging(0.999) TCGA-FR-A7U9-06 13 98655267 98655267 C T IPO5 Silent p.S509S 0.32 TCGA-FR-A7U9-06 14 102483829 102483829 C T DYNC1H1 Missense_Mutation p.P2722L 0.23 probably_damaging(0.994) TCGA-FR-A7U9-06 14 103173841 103173841 C T RCOR1 Nonsense_Mutation p.Q218* 0.19 TCGA-FR-A7U9-06 14 104633297 104633297 G A KIF26A Missense_Mutation p.G342E 0.27 deleterious(0) possibly_damaging(0.879) TCGA-FR-A7U9-06 14 104642863 104642863 G A KIF26A Silent p.R1246R 0.32 TCGA-FR-A7U9-06 14 105411454 105411454 G A AHNAK2 Missense_Mutation p.A3445V 0.25 benign(0.142) TCGA-FR-A7U9-06 14 105930762 105930762 C T MTA1 Missense_Mutation p.S401F 0.16 deleterious(0) probably_damaging(0.959) TCGA-FR-A7U9-06 14 106208492 106208492 G A IGHG1 Silent p.I136I 0.16 TCGA-FR-A7U9-06 14 106208522 106208522 G A IGHG1 Silent p.F126F 0.16 TCGA-FR-A7U9-06 14 106236286 106236286 G A IGHG3 Silent p.F173F 0.26 TCGA-FR-A7U9-06 14 106926618 106926618 G A IGHV3-43 Silent p.F9F 0.13 TCGA-FR-A7U9-06 14 106967137 106967137 G A IGHV1-46 Missense_Mutation p.T88I 0.21 deleterious(0.03) benign(0.245) TCGA-FR-A7U9-06 14 106967537 106967537 G A IGHV1-46 5'UTR 0.19 TCGA-FR-A7U9-06 14 107048837 107048837 C T IGHV3-53 Silent p.G61G 0.10 TCGA-FR-A7U9-06 14 107114010 107114010 C T IGHV3-64 Missense_Mutation p.E29K 0.28 deleterious_low_confidence(0) benign(0.039) TCGA-FR-A7U9-06 14 107199365 107199365 G A IGHV3-72 Silent p.F9F 0.17 TCGA-FR-A7U9-06 14 20344759 20344759 G A OR4K2 Silent p.E111E 0.23 TCGA-FR-A7U9-06 14 20404357 20404357 T C OR4K1 Missense_Mutation p.F178L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 14 20528758 20528758 C T OR4L1 Silent p.I185I 0.16 TCGA-FR-A7U9-06 14 20585871 20585871 G A OR4K17 Missense_Mutation p.M102I 0.19 tolerated(0.43) benign(0.07) TCGA-FR-A7U9-06 14 20711835 20711835 T C OR11H4 Silent p.F295F 0.20 TCGA-FR-A7U9-06 14 21024599 21024599 G A RNASE9 3'UTR 0.18 TCGA-FR-A7U9-06 14 21793428 21793428 G A RPGRIP1 Nonsense_Mutation p.W751* 0.18 TCGA-FR-A7U9-06 14 21795902 21795902 G A RPGRIP1 Missense_Mutation p.G944E 0.26 tolerated(1) benign(0) TCGA-FR-A7U9-06 14 21990161 21990161 G A SALL2 3'UTR 0.30 TCGA-FR-A7U9-06 14 22090071 22090071 C T TRAV1-1 Silent p.F5F 0.29 TCGA-FR-A7U9-06 14 22133890 22133890 G A OR4E2 Silent p.L198L 0.23 TCGA-FR-A7U9-06 14 22180575 22180575 G A TRAV2 Missense_Mutation p.G8R 0.23 tolerated_low_confidence(0.08) benign(0.001) TCGA-FR-A7U9-06 14 22434060 22434060 G A TRAV12-3 Missense_Mutation p.G38E 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-FR-A7U9-06 14 22446951 22446951 G A TRAV8-6 Silent p.V11V 0.20 TCGA-FR-A7U9-06 14 22580733 22580733 C T TRAV25 Missense_Mutation p.P26S 0.20 deleterious(0.03) probably_damaging(1) TCGA-FR-A7U9-06 14 23282222 23282222 G A SLC7A7 Missense_Mutation p.P129L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 14 23858830 23858830 G A MYH6 Silent p.T1277T 0.28 TCGA-FR-A7U9-06 14 23859388 23859388 C T MYH6 Missense_Mutation p.E1204K 0.21 deleterious(0) benign(0.415) TCGA-FR-A7U9-06 14 23862907 23862907 C T MYH6 Missense_Mutation p.V966M 0.12 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 14 24655615 24655615 G A IPO4 Missense_Mutation p.L295F 0.18 deleterious(0) probably_damaging(0.949) TCGA-FR-A7U9-06 14 24655616 24655616 G A IPO4 Silent p.T294T 0.17 TCGA-FR-A7U9-06 14 24788418 24788418 C T ADCY4 Missense_Mutation p.D948N 0.22 deleterious(0.03) benign(0.026) TCGA-FR-A7U9-06 14 24839545 24839545 C T NFATC4 Missense_Mutation p.P377L 0.21 tolerated(0.07) possibly_damaging(0.89) TCGA-FR-A7U9-06 14 28734142 28734142 C T BNIP3P1 RNA 0.18 TCGA-FR-A7U9-06 14 28734369 28734369 C T BNIP3P1 RNA 0.19 TCGA-FR-A7U9-06 14 31358895 31358895 G A COCH Silent p.K517K 0.18 TCGA-FR-A7U9-06 14 31358896 31358896 G A COCH Missense_Mutation p.E518K 0.18 tolerated(0.93) possibly_damaging(0.52) TCGA-FR-A7U9-06 14 34395068 34395068 G A EGLN3 3'UTR 0.12 TCGA-FR-A7U9-06 14 37194812 37194812 T G SLC25A21 Missense_Mutation p.K134T 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 14 37969124 37969124 C T MIPOL1 Missense_Mutation p.S348F 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 14 38296439 38296439 G A TTC6 Silent p.V1722V 0.30 TCGA-FR-A7U9-06 14 47315056 47315056 G A MDGA2 Nonsense_Mutation p.R968* 0.14 TCGA-FR-A7U9-06 14 47315057 47315057 G C MDGA2 Missense_Mutation p.I967M 0.14 deleterious(0) possibly_damaging(0.851) TCGA-FR-A7U9-06 14 51561023 51561023 G A TRIM9 Missense_Mutation p.P212L 0.16 deleterious(0.05) possibly_damaging(0.629) TCGA-FR-A7U9-06 14 58832835 58832835 T C ARID4A Missense_Mutation p.L1137P 0.25 tolerated(0.21) benign(0.011) TCGA-FR-A7U9-06 14 60074107 60074107 G A RTN1 Silent p.V623V 0.17 TCGA-FR-A7U9-06 14 60611579 60611579 G A DHRS7 3'UTR 0.25 TCGA-FR-A7U9-06 14 62462960 62462960 G A SYT16 Missense_Mutation p.D75N 0.21 tolerated_low_confidence(0.13) benign(0.003) TCGA-FR-A7U9-06 14 63174307 63174307 G A KCNH5 Silent p.P962P 0.18 TCGA-FR-A7U9-06 14 63269215 63269215 G A KCNH5 Nonsense_Mutation p.R552* 0.17 TCGA-FR-A7U9-06 14 64746870 64746870 C T ESR2 Missense_Mutation p.E122K 0.22 tolerated(0.39) benign(0.17) TCGA-FR-A7U9-06 14 65263368 65263368 C A SPTB Silent p.R416R 0.15 TCGA-FR-A7U9-06 14 69371426 69371426 C T ACTN1 Missense_Mutation p.A208T 0.21 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 14 70490029 70490029 C T SMOC1 Missense_Mutation p.P386S 0.15 deleterious(0) probably_damaging(0.956) TCGA-FR-A7U9-06 14 70497015 70497015 G A SMOC1 3'UTR 0.16 TCGA-FR-A7U9-06 14 70634963 70634963 G A SLC8A3 Silent p.I59I 0.32 TCGA-FR-A7U9-06 14 70635098 70635098 G A SLC8A3 Silent p.L14L 0.28 TCGA-FR-A7U9-06 14 70713849 70713849 C A ADAM21P1 RNA 0.15 TCGA-FR-A7U9-06 14 71215587 71215587 C T MAP3K9 Missense_Mutation p.E429K 0.16 deleterious(0) probably_damaging(0.992) TCGA-FR-A7U9-06 14 73720524 73720524 C T PAPLN Missense_Mutation p.S359F 0.23 deleterious(0) possibly_damaging(0.459) TCGA-FR-A7U9-06 14 74756791 74756791 G A ABCD4 Missense_Mutation p.P453L 0.27 deleterious(0.01) possibly_damaging(0.665) TCGA-FR-A7U9-06 14 75537685 75537685 C T ZC2HC1C Missense_Mutation p.R137W 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 14 76964774 76964774 C T ESRRB Silent p.F425F 0.33 TCGA-FR-A7U9-06 14 81743583 81743583 C T STON2 Missense_Mutation p.R691K 0.16 tolerated(0.88) benign(0.279) TCGA-FR-A7U9-06 14 89044481 89044481 C T ZC3H14 Nonsense_Mutation p.Q426* 0.18 TCGA-FR-A7U9-06 14 90755409 90755409 G A NRDE2 Silent p.L770L 0.18 TCGA-FR-A7U9-06 14 90783029 90783029 C T NRDE2 Silent p.R100R 0.16 TCGA-FR-A7U9-06 14 91755463 91755463 C T CCDC88C Missense_Mutation p.G1476E 0.16 tolerated(0.56) possibly_damaging(0.548) TCGA-FR-A7U9-06 14 92091299 92091299 C T CATSPERB Missense_Mutation p.G599R 0.14 deleterious(0.01) possibly_damaging(0.718) TCGA-FR-A7U9-06 14 92136196 92136196 G A CATSPERB Missense_Mutation p.H417Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 14 92361392 92361392 G A FBLN5 Missense_Mutation p.S135F 0.19 tolerated(0.15) probably_damaging(0.93) TCGA-FR-A7U9-06 14 93043762 93043762 C T RIN3 Missense_Mutation p.P103S 0.16 deleterious(0.04) unknown(0) TCGA-FR-A7U9-06 14 94394840 94394840 G A FAM181A Missense_Mutation p.R132K 0.35 tolerated(0.26) possibly_damaging(0.599) TCGA-FR-A7U9-06 14 94722918 94722918 G A PPP4R4 Missense_Mutation p.D663N 0.22 deleterious(0) probably_damaging(0.99) TCGA-FR-A7U9-06 14 94770941 94770941 C T SERPINA6 Splice_Site p.X345_splice 0.26 TCGA-FR-A7U9-06 14 99723868 99723868 C T BCL11B Missense_Mutation p.E123K 0.23 deleterious(0.01) benign(0.097) TCGA-FR-A7U9-06 15 100331962 100331962 G A AC090825.1 5'Flank 0.13 TCGA-FR-A7U9-06 15 100943017 100943017 C A CERS3 Missense_Mutation p.E351D 0.28 tolerated(0.29) benign(0.251) TCGA-FR-A7U9-06 15 101567494 101567494 C T LRRK1 Nonsense_Mutation p.Q812* 0.10 TCGA-FR-A7U9-06 15 101606239 101606239 C T LRRK1 Missense_Mutation p.S1866F 0.20 tolerated_low_confidence(0.37) benign(0.021) TCGA-FR-A7U9-06 15 22332734 22332734 G A RP11-69H14.6 RNA 0.16 TCGA-FR-A7U9-06 15 24922388 24922388 C T NPAP1 Silent p.I458I 0.30 TCGA-FR-A7U9-06 15 25213133 25213133 C T SNURF Silent p.F55F 0.26 TCGA-FR-A7U9-06 15 25419972 25419972 G A SNORD115-3 5'Flank 0.23 TCGA-FR-A7U9-06 15 25430844 25430844 G A SNORD115-9 RNA 0.21 TCGA-FR-A7U9-06 15 25601062 25601062 G A UBE3A Missense_Mutation p.P704S 0.25 tolerated(0.4) benign(0.147) TCGA-FR-A7U9-06 15 25654350 25654350 T A UBE3A 5'Flank 0.25 TCGA-FR-A7U9-06 15 27772685 27772685 C T GABRG3 Silent p.F324F 0.21 TCGA-FR-A7U9-06 15 28388020 28388020 G A HERC2 Missense_Mutation p.P3833S 0.15 benign(0.258) TCGA-FR-A7U9-06 15 34532910 34532910 G A SLC12A6 Silent p.I796I 0.31 TCGA-FR-A7U9-06 15 34543217 34543217 C T SLC12A6 Missense_Mutation p.E459K 0.26 tolerated(0.06) possibly_damaging(0.812) TCGA-FR-A7U9-06 15 34647273 34647273 A G NUTM1 Missense_Mutation p.K444E 0.10 tolerated(0.72) benign(0.021) TCGA-FR-A7U9-06 15 34649356 34649356 T A NUTM1 Silent p.A1021A 0.27 TCGA-FR-A7U9-06 15 35212620 35212620 G A AQR Silent p.H378H 0.24 TCGA-FR-A7U9-06 15 35530224 35530224 G A ANP32AP1 RNA 0.30 TCGA-FR-A7U9-06 15 37376025 37376025 C T MEIS2 Missense_Mutation p.G234E 0.22 deleterious(0) probably_damaging(0.957) TCGA-FR-A7U9-06 15 40756196 40756196 C T BAHD1 Missense_Mutation p.A651V 0.16 deleterious(0) probably_damaging(0.93) TCGA-FR-A7U9-06 15 41146000 41146000 C T SPINT1 Silent p.F278F 0.23 TCGA-FR-A7U9-06 15 41377614 41377614 G A INO80 Missense_Mutation p.R276C 0.21 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 15 41796220 41796220 G A LTK Missense_Mutation p.L857F 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-FR-A7U9-06 15 41815071 41815071 G A RPAP1 Silent p.G878G 0.24 TCGA-FR-A7U9-06 15 41820505 41820505 G A RPAP1 Silent p.F396F 0.56 TCGA-FR-A7U9-06 15 41870414 41870414 C A TYRO3 Silent p.L871L 0.13 TCGA-FR-A7U9-06 15 42127272 42127272 C T JMJD7-PLA2G4B Missense_Mutation p.P108L 0.21 tolerated_low_confidence(0.09) benign(0.159) TCGA-FR-A7U9-06 15 42132394 42132394 C T PLA2G4B Silent p.V247V 0.17 TCGA-FR-A7U9-06 15 42158676 42158676 G A SPTBN5 Nonsense_Mutation p.Q2166* 0.39 TCGA-FR-A7U9-06 15 42375947 42375947 G A PLA2G4D Silent p.L168L 0.25 TCGA-FR-A7U9-06 15 43822398 43822398 C T MAP1A Silent p.F2796F 0.18 TCGA-FR-A7U9-06 15 45386775 45386775 C G DUOX2 Missense_Mutation p.E1504Q 0.32 deleterious(0.01) possibly_damaging(0.901) TCGA-FR-A7U9-06 15 48056460 48056460 C T SEMA6D Missense_Mutation p.S352F 0.36 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 15 49620705 49620705 T C GALK2 3'UTR 0.39 TCGA-FR-A7U9-06 15 50544684 50544684 G A HDC Silent p.F328F 0.29 TCGA-FR-A7U9-06 15 51503047 51503047 C T CYP19A1 Missense_Mutation p.M490I 0.17 deleterious(0.03) benign(0.006) TCGA-FR-A7U9-06 15 51675645 51675645 C T GLDN Missense_Mutation p.P143L 0.25 tolerated(0.13) benign(0.25) TCGA-FR-A7U9-06 15 52486009 52486009 C T MYO5C 3'UTR 0.24 TCGA-FR-A7U9-06 15 53908238 53908238 T A WDR72 Missense_Mutation p.K722M 0.18 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 15 53994475 53994475 C T WDR72 Silent p.S475S 0.21 TCGA-FR-A7U9-06 15 54306172 54306172 G A UNC13C Missense_Mutation p.E358K 0.14 tolerated_low_confidence(0.09) benign(0.235) TCGA-FR-A7U9-06 15 54799384 54799384 G A UNC13C Missense_Mutation p.E1791K 0.42 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-FR-A7U9-06 15 55965651 55965651 C T PRTG Silent p.R590R 0.09 TCGA-FR-A7U9-06 15 63966908 63966908 G A HERC1 Silent p.S2493S 0.25 TCGA-FR-A7U9-06 15 65667450 65667450 G A IGDCC3 Missense_Mutation p.R132C 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-FR-A7U9-06 15 66850186 66850186 C T LCTL Missense_Mutation p.E266K 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 15 68612573 68612573 G A ITGA11 Silent p.L856L 0.27 TCGA-FR-A7U9-06 15 69672261 69672261 C T PAQR5 Missense_Mutation p.P31S 0.27 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 15 73615767 73615767 G A HCN4 Silent p.S889S 0.33 TCGA-FR-A7U9-06 15 74180032 74180032 G A TBC1D21 Silent p.R283R 0.37 TCGA-FR-A7U9-06 15 75042793 75042793 C T CYP1A2 Silent p.F238F 0.20 TCGA-FR-A7U9-06 15 75981624 75981624 G A CSPG4 Silent p.V594V 0.25 TCGA-FR-A7U9-06 15 76496435 76496435 G A C15orf27 Missense_Mutation p.D459N 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.9) TCGA-FR-A7U9-06 15 77425660 77425660 G A PEAK1 Missense_Mutation p.S1255F 0.29 deleterious(0.01) benign(0.099) TCGA-FR-A7U9-06 15 79080621 79080621 G A ADAMTS7 Missense_Mutation p.P425L 0.42 tolerated(0.2) possibly_damaging(0.609) TCGA-FR-A7U9-06 15 79750337 79750337 C T KIAA1024 Silent p.V616V 0.18 TCGA-FR-A7U9-06 15 79750338 79750338 C T KIAA1024 Missense_Mutation p.R617C 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 15 81440775 81440775 G A C15orf26 Silent p.G269G 0.21 TCGA-FR-A7U9-06 15 83240211 83240211 C A CPEB1 Missense_Mutation p.G88C 0.10 tolerated_low_confidence(0.1) benign(0.178) TCGA-FR-A7U9-06 15 83240212 83240212 A G CPEB1 Silent p.R87R 0.10 TCGA-FR-A7U9-06 15 83240213 83240213 C G CPEB1 Missense_Mutation p.R87P 0.10 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-FR-A7U9-06 15 83561501 83561501 G A HOMER2 Missense_Mutation p.T33I 0.23 deleterious(0) possibly_damaging(0.738) TCGA-FR-A7U9-06 15 83933493 83933493 G A BNC1 Silent p.F170F 0.40 TCGA-FR-A7U9-06 15 85438689 85438689 A G SLC28A1 Intron 0.18 TCGA-FR-A7U9-06 15 85476379 85476379 G A SLC28A1 Missense_Mutation p.D363N 0.14 deleterious(0.04) probably_damaging(0.993) TCGA-FR-A7U9-06 15 86087103 86087103 C T AKAP13 Silent p.L193L 0.18 TCGA-FR-A7U9-06 15 86236606 86236606 C T AKAP13 Silent p.S1800S 0.38 TCGA-FR-A7U9-06 15 86800169 86800169 C T AGBL1 Missense_Mutation p.P228L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 15 87097687 87097687 G A AGBL1 Silent p.V925V 0.20 TCGA-FR-A7U9-06 15 89417227 89417227 G A ACAN Nonsense_Mutation p.W2496* 0.27 TCGA-FR-A7U9-06 15 89417235 89417235 C T ACAN Missense_Mutation p.P2499L 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 15 89871747 89871747 G A POLG Missense_Mutation p.A397V 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 15 90023568 90023568 G A RHCG Silent p.I198I 0.25 TCGA-FR-A7U9-06 15 92459294 92459294 C T SLCO3A1 Silent p.S84S 0.36 TCGA-FR-A7U9-06 15 93515496 93515496 C T CHD2 Missense_Mutation p.S785F 0.15 tolerated(0.05) possibly_damaging(0.461) TCGA-FR-A7U9-06 16 10032197 10032197 G A GRIN2A Missense_Mutation p.S209F 0.21 deleterious(0.05) benign(0.18) TCGA-FR-A7U9-06 16 10273962 10273962 C T GRIN2A Missense_Mutation p.D103N 0.18 tolerated(0.66) possibly_damaging(0.476) TCGA-FR-A7U9-06 16 1143840 1143840 C T C1QTNF8 Silent p.T140T 0.17 TCGA-FR-A7U9-06 16 12121235 12121235 C T SNX29 Nonsense_Mutation p.R61* 0.19 TCGA-FR-A7U9-06 16 1270436 1270436 G A CACNA1H Silent p.A2168A 0.26 TCGA-FR-A7U9-06 16 1292272 1292272 G A TPSAB1 3'UTR 0.13 TCGA-FR-A7U9-06 16 1292273 1292273 G A TPSAB1 3'UTR 0.13 TCGA-FR-A7U9-06 16 14041996 14041996 C T ERCC4 Missense_Mutation p.P848L 0.13 tolerated(0.19) possibly_damaging(0.688) TCGA-FR-A7U9-06 16 14755896 14755896 G A BFAR Missense_Mutation p.G311R 0.20 tolerated(0.57) benign(0.004) TCGA-FR-A7U9-06 16 15835320 15835320 C T MYH11 Silent p.L960L 0.15 TCGA-FR-A7U9-06 16 16302702 16302702 C T ABCC6 Missense_Mutation p.G226E 0.20 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 16 17228451 17228451 C T XYLT1 Missense_Mutation p.D636N 0.21 deleterious(0.01) possibly_damaging(0.905) TCGA-FR-A7U9-06 16 1828212 1828212 G A SPSB3 Missense_Mutation p.R139W 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 16 1828213 1828213 G A SPSB3 Silent p.I138I 0.13 TCGA-FR-A7U9-06 16 18549973 18549973 G A NOMO2 Silent p.F365F 0.17 TCGA-FR-A7U9-06 16 19451378 19451378 G A TMC5 Silent p.R6R 0.23 TCGA-FR-A7U9-06 16 19455503 19455503 G A TMC5 Missense_Mutation p.E297K 0.17 deleterious(0.03) benign(0.15) TCGA-FR-A7U9-06 16 2012972 2012972 G A RPS2 Intron 0.21 TCGA-FR-A7U9-06 16 20556571 20556571 C T ACSM2B Missense_Mutation p.D397N 0.11 deleterious(0.04) benign(0.013) TCGA-FR-A7U9-06 16 20559422 20559422 C T ACSM2B Missense_Mutation p.G354R 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 16 20559722 20559722 A T ACSM2B Missense_Mutation p.L323H 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A7U9-06 16 20959853 20959853 G A DNAH3 Silent p.S3765S 0.18 TCGA-FR-A7U9-06 16 20959854 20959854 G A DNAH3 Missense_Mutation p.S3765F 0.18 tolerated(0.72) benign(0.002) TCGA-FR-A7U9-06 16 20975038 20975038 C T DNAH3 Missense_Mutation p.E3390K 0.28 tolerated(0.3) benign(0.081) TCGA-FR-A7U9-06 16 21073909 21073909 C T DNAH3 Missense_Mutation p.G1205E 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 16 21261596 21261596 G A ANKS4B Missense_Mutation p.E237K 0.26 tolerated(0.42) benign(0.419) TCGA-FR-A7U9-06 16 21693074 21693074 G A OTOA Silent p.T65T 0.18 TCGA-FR-A7U9-06 16 23119453 23119453 C A USP31 Missense_Mutation p.A229S 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A7U9-06 16 23200819 23200819 G A SCNN1G Missense_Mutation p.G149R 0.17 tolerated(0.23) possibly_damaging(0.882) TCGA-FR-A7U9-06 16 23692377 23692377 C T PLK1 Silent p.I240I 0.24 TCGA-FR-A7U9-06 16 2373621 2373621 G A ABCA3 Silent p.F172F 0.20 TCGA-FR-A7U9-06 16 24373137 24373137 G A CACNG3 Missense_Mutation p.E301K 0.17 deleterious(0.01) benign(0.003) TCGA-FR-A7U9-06 16 24834251 24834251 C T TNRC6A Silent p.F1810F 0.23 TCGA-FR-A7U9-06 16 27475976 27475976 G A GTF3C1 Missense_Mutation p.P1846L 0.17 tolerated(0.33) benign(0.002) TCGA-FR-A7U9-06 16 28354284 28354284 G A NPIPB6 Missense_Mutation p.L308F 0.17 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-FR-A7U9-06 16 2868780 2868780 C T PRSS21 Silent p.F120F 0.24 TCGA-FR-A7U9-06 16 29906745 29906745 G A SEZ6L2 Silent p.L230L 0.12 TCGA-FR-A7U9-06 16 30006690 30006690 C T HIRIP3 Missense_Mutation p.V54M 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A7U9-06 16 30525133 30525133 G A ITGAL Missense_Mutation p.G943D 0.19 tolerated(0.4) benign(0.009) TCGA-FR-A7U9-06 16 30750189 30750189 C T SRCAP Missense_Mutation p.P2943L 0.41 unknown(0) TCGA-FR-A7U9-06 16 3713001 3713001 C T TRAP1 Intron 0.30 TCGA-FR-A7U9-06 16 3778812 3778812 G A CREBBP Missense_Mutation p.S2079F 0.29 possibly_damaging(0.472) TCGA-FR-A7U9-06 16 3789704 3789704 C A CREBBP Missense_Mutation p.M1385I 0.24 unknown(0) TCGA-FR-A7U9-06 16 4029150 4029150 G A ADCY9 Silent p.S882S 0.15 TCGA-FR-A7U9-06 16 4164409 4164409 G A ADCY9 Silent p.D345D 0.26 TCGA-FR-A7U9-06 16 460259 460259 C T DECR2 Silent p.F118F 0.21 TCGA-FR-A7U9-06 16 460260 460260 C T DECR2 Silent p.L119L 0.20 TCGA-FR-A7U9-06 16 4930272 4930272 C T UBN1 3'UTR 0.33 TCGA-FR-A7U9-06 16 49669666 49669666 C T ZNF423 Missense_Mutation p.E1133K 0.26 tolerated(0.77) benign(0.003) TCGA-FR-A7U9-06 16 5053558 5053558 C T SEC14L5 Missense_Mutation p.P429L 0.08 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 16 51171129 51171129 G A SALL1 Missense_Mutation p.P1290L 0.26 tolerated(0.11) benign(0.206) TCGA-FR-A7U9-06 16 5129792 5129792 C T ALG1 Silent p.L315L 0.30 TCGA-FR-A7U9-06 16 53636088 53636088 C T RPGRIP1L Missense_Mutation p.R1283Q 0.21 tolerated(1) benign(0.002) TCGA-FR-A7U9-06 16 56871563 56871563 C T NUP93 Missense_Mutation p.P648L 0.24 tolerated(0.09) possibly_damaging(0.787) TCGA-FR-A7U9-06 16 56933466 56933466 C T SLC12A3 Silent p.F895F 0.23 TCGA-FR-A7U9-06 16 57015126 57015126 C T CETP Silent p.L401L 0.25 TCGA-FR-A7U9-06 16 57416891 57416891 C T CX3CL1 Missense_Mutation p.R381C 0.16 tolerated(0.13) benign(0.318) TCGA-FR-A7U9-06 16 57760054 57760054 C T CCDC135 Silent p.V611V 0.12 TCGA-FR-A7U9-06 16 58537806 58537806 C T NDRG4 Silent p.N94N 0.20 TCGA-FR-A7U9-06 16 61687706 61687706 G A CDH8 Missense_Mutation p.P736S 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-FR-A7U9-06 16 61823356 61823356 C T CDH8 Silent p.E436E 0.15 TCGA-FR-A7U9-06 16 61823358 61823358 C T CDH8 Missense_Mutation p.E436K 0.16 tolerated(0.19) benign(0.266) TCGA-FR-A7U9-06 16 61823359 61823359 C T CDH8 Silent p.L435L 0.16 TCGA-FR-A7U9-06 16 61854908 61854908 G A CDH8 Silent p.I315I 0.11 TCGA-FR-A7U9-06 16 64981644 64981644 C T CDH11 Silent p.V751V 0.19 TCGA-FR-A7U9-06 16 67327534 67327534 C A KCTD19 Missense_Mutation p.G711W 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-FR-A7U9-06 16 67333440 67333440 G A KCTD19 Missense_Mutation p.P271L 0.20 deleterious(0.04) benign(0.01) TCGA-FR-A7U9-06 16 67942808 67942808 C T PSKH1 Silent p.F52F 0.20 TCGA-FR-A7U9-06 16 67942859 67942859 C T PSKH1 Silent p.G69G 0.19 TCGA-FR-A7U9-06 16 68405455 68405455 C T SMPD3 Silent p.V210V 0.18 TCGA-FR-A7U9-06 16 69370411 69370411 G A COG8 Silent p.I194I 0.19 TCGA-FR-A7U9-06 16 69680995 69680995 C T NFAT5 Silent p.S106S 0.25 TCGA-FR-A7U9-06 16 69988301 69988301 C T CLEC18A Missense_Mutation p.P94L 0.13 tolerated(0.13) benign(0.016) TCGA-FR-A7U9-06 16 70162891 70162891 C A PDPR Missense_Mutation p.S158Y 0.10 deleterious(0) possibly_damaging(0.748) TCGA-FR-A7U9-06 16 70534972 70534972 C T COG4 Missense_Mutation p.E362K 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 16 70602270 70602270 C T SF3B3 Missense_Mutation p.R1013C 0.20 tolerated(0.18) probably_damaging(0.946) TCGA-FR-A7U9-06 16 71196500 71196500 G A HYDIN Missense_Mutation p.T217I 0.27 probably_damaging(0.996) TCGA-FR-A7U9-06 16 71748535 71748535 G C PHLPP2 Missense_Mutation p.S55C 0.23 deleterious_low_confidence(0.01) benign(0.001) TCGA-FR-A7U9-06 16 722148 722148 C T RHOT2 Missense_Mutation p.L388F 0.22 tolerated(0.22) benign(0.111) TCGA-FR-A7U9-06 16 74695302 74695302 G A RFWD3 Missense_Mutation p.H16Y 0.22 tolerated_low_confidence(0.1) benign(0.001) TCGA-FR-A7U9-06 16 77401569 77401569 G A ADAMTS18 Nonsense_Mutation p.Q183* 0.12 TCGA-FR-A7U9-06 16 77896787 77896787 G A VAT1L Missense_Mutation p.R241K 0.17 tolerated(1) benign(0.002) TCGA-FR-A7U9-06 16 77910291 77910291 C T VAT1L Silent p.I249I 0.16 TCGA-FR-A7U9-06 16 80638279 80638279 G A CDYL2 3'UTR 0.22 TCGA-FR-A7U9-06 16 80638280 80638280 G A CDYL2 3'UTR 0.23 TCGA-FR-A7U9-06 16 81161416 81161416 C T PKD1L2 RNA 0.16 TCGA-FR-A7U9-06 16 81324251 81324251 G A BCMO1 3'UTR 0.27 TCGA-FR-A7U9-06 16 817386 817386 C T MSLN Silent p.P512P 0.24 TCGA-FR-A7U9-06 16 81934238 81934238 C T PLCG2 Silent p.I405I 0.17 TCGA-FR-A7U9-06 16 825551 825551 C T MSLNL Missense_Mutation p.G404S 0.20 probably_damaging(0.97) TCGA-FR-A7U9-06 16 87445729 87445729 G A ZCCHC14 Silent p.P729P 0.20 TCGA-FR-A7U9-06 16 87445730 87445730 G C ZCCHC14 Missense_Mutation p.P729R 0.20 deleterious(0) unknown(0) TCGA-FR-A7U9-06 16 87678127 87678127 C T JPH3 Missense_Mutation p.R216W 0.21 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 16 9857513 9857513 G A GRIN2A Silent p.V1296V 0.14 TCGA-FR-A7U9-06 16 9943626 9943626 A T GRIN2A Missense_Mutation p.F439I 0.25 tolerated(0.33) benign(0.12) TCGA-FR-A7U9-06 17 10451258 10451258 C T MYH2 Splice_Site 0.35 TCGA-FR-A7U9-06 17 12626298 12626298 G A MYOCD Missense_Mutation p.D130N 0.46 deleterious(0.04) probably_damaging(0.991) TCGA-FR-A7U9-06 17 12860057 12860057 C T ARHGAP44 Missense_Mutation p.P446S 0.19 deleterious(0) possibly_damaging(0.71) TCGA-FR-A7U9-06 17 18023237 18023237 C T MYO15A Missense_Mutation p.H375Y 0.39 benign(0.003) TCGA-FR-A7U9-06 17 18023611 18023611 C T MYO15A Silent p.P499P 0.37 TCGA-FR-A7U9-06 17 18681818 18681818 G A FBXW10 Missense_Mutation p.G789E 0.29 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 17 19015788 19015788 C T SNORD3D RNA 0.08 TCGA-FR-A7U9-06 17 28361258 28361258 C T EFCAB5 Missense_Mutation p.S352L 0.38 tolerated(0.11) benign(0.045) TCGA-FR-A7U9-06 17 29585371 29585371 C T NF1 Nonsense_Mutation p.Q1395* 0.36 TCGA-FR-A7U9-06 17 29653192 29653192 C T NF1 Silent p.T1730T 0.38 TCGA-FR-A7U9-06 17 3030378 3030378 G A OR1G1 Silent p.S156S 0.40 TCGA-FR-A7U9-06 17 3195613 3195613 G A OR3A1 Silent p.L88L 0.40 TCGA-FR-A7U9-06 17 32598266 32598266 C T CCL7 Missense_Mutation p.P60S 0.39 tolerated(0.06) possibly_damaging(0.53) TCGA-FR-A7U9-06 17 33772455 33772455 G A SLFN13 Missense_Mutation p.S82F 0.44 deleterious(0.02) probably_damaging(0.935) TCGA-FR-A7U9-06 17 33772679 33772679 G A SLFN13 Silent p.S7S 0.38 TCGA-FR-A7U9-06 17 3417914 3417914 C T TRPV3 Missense_Mutation p.E751K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 17 3470121 3470121 G A SHPK Silent p.S836S 0.32 TCGA-FR-A7U9-06 17 36365090 36365090 C T RP11-1407O15.2 Missense_Mutation p.G169R 0.13 TCGA-FR-A7U9-06 17 36895111 36895111 G A PCGF2 Missense_Mutation p.P107L 0.51 deleterious(0.01) benign(0.244) TCGA-FR-A7U9-06 17 37187480 37187480 G A CTD-2206N4.2 5'Flank 0.50 TCGA-FR-A7U9-06 17 38131246 38131246 T C GSDMA Missense_Mutation p.Y334H 0.36 tolerated(0.07) probably_damaging(1) TCGA-FR-A7U9-06 17 3844897 3844897 G A ATP2A3 Missense_Mutation p.R533C 0.38 deleterious(0.05) benign(0.371) TCGA-FR-A7U9-06 17 38643386 38643386 G A TNS4 Missense_Mutation p.S397F 0.49 tolerated(0.74) benign(0.001) TCGA-FR-A7U9-06 17 39140491 39140491 G A KRT40 Missense_Mutation p.P12L 0.36 tolerated(0.07) benign(0.058) TCGA-FR-A7U9-06 17 40004577 40004577 A G KLHL10 3'UTR 0.50 TCGA-FR-A7U9-06 17 41008405 41008405 C T AOC3 Silent p.F710F 0.48 TCGA-FR-A7U9-06 17 42294012 42294012 G C UBTF Missense_Mutation p.S40C 0.31 deleterious(0.03) possibly_damaging(0.76) TCGA-FR-A7U9-06 17 42333110 42333110 G A SLC4A1 Silent p.L577L 0.43 TCGA-FR-A7U9-06 17 43176832 43176832 G A NMT1 Missense_Mutation p.S315N 0.49 deleterious(0.05) benign(0.205) TCGA-FR-A7U9-06 17 43592082 43592082 G A LRRC37A4P RNA 0.09 TCGA-FR-A7U9-06 17 44953964 44953964 G A WNT9B Silent p.R318R 0.44 TCGA-FR-A7U9-06 17 45258953 45258953 G A CDC27 Silent p.F26F 0.41 TCGA-FR-A7U9-06 17 45890698 45890698 G A OSBPL7 Silent p.N557N 0.32 TCGA-FR-A7U9-06 17 46608051 46608051 C T HOXB1 Silent p.L72L 0.42 TCGA-FR-A7U9-06 17 47122386 47122386 C T IGF2BP1 Missense_Mutation p.R452C 0.47 deleterious(0.03) probably_damaging(0.975) TCGA-FR-A7U9-06 17 48538054 48538054 C T ACSF2 Missense_Mutation p.R49C 0.55 tolerated(0.17) benign(0.002) TCGA-FR-A7U9-06 17 48593948 48593948 G A MYCBPAP Missense_Mutation p.G75R 0.51 tolerated(0.13) benign(0.331) TCGA-FR-A7U9-06 17 48606195 48606195 G A MYCBPAP Silent p.G892G 0.50 TCGA-FR-A7U9-06 17 4910795 4910795 C A KIF1C Silent p.V483V 0.32 TCGA-FR-A7U9-06 17 4910796 4910796 C T KIF1C Missense_Mutation p.R484W 0.32 deleterious(0) possibly_damaging(0.77) TCGA-FR-A7U9-06 17 49343619 49343619 C T UTP18 Missense_Mutation p.L178F 0.55 tolerated(0.08) benign(0.18) TCGA-FR-A7U9-06 17 4937574 4937574 C T SLC52A1 Silent p.Q70Q 0.36 TCGA-FR-A7U9-06 17 50008373 50008373 G A CA10 Missense_Mutation p.R86C 0.42 deleterious(0.02) possibly_damaging(0.751) TCGA-FR-A7U9-06 17 51900860 51900860 C T KIF2B Silent p.L156L 0.39 TCGA-FR-A7U9-06 17 54892329 54892329 C T C17orf67 Silent p.E19E 0.16 TCGA-FR-A7U9-06 17 56166593 56166593 T C DYNLL2 Missense_Mutation p.Y75H 0.18 deleterious(0.03) possibly_damaging(0.548) TCGA-FR-A7U9-06 17 58123538 58123538 G A HEATR6 Missense_Mutation p.P941L 0.40 deleterious(0.05) benign(0.387) TCGA-FR-A7U9-06 17 59668251 59668251 C T NACA2 Nonsense_Mutation p.W97* 0.16 TCGA-FR-A7U9-06 17 60759711 60759711 C T MRC2 Silent p.P973P 0.40 TCGA-FR-A7U9-06 17 62018527 62018527 G A SCN4A Silent p.F1705F 0.22 TCGA-FR-A7U9-06 17 62041999 62041999 G A SCN4A Silent p.F427F 0.19 TCGA-FR-A7U9-06 17 62856206 62856206 G A LRRC37A3 Missense_Mutation p.S1353F 0.15 tolerated(0.11) probably_damaging(0.999) TCGA-FR-A7U9-06 17 62859229 62859229 A T LRRC37A3 Intron 0.19 TCGA-FR-A7U9-06 17 64873388 64873388 C T CACNG5 5'UTR 0.46 TCGA-FR-A7U9-06 17 67083608 67083608 G A ABCA6 Silent p.S1235S 0.32 TCGA-FR-A7U9-06 17 67218781 67218781 T C ABCA10 Missense_Mutation p.K31R 0.31 tolerated(0.12) benign(0.012) TCGA-FR-A7U9-06 17 685544 685544 G A GLOD4 5'UTR 0.56 TCGA-FR-A7U9-06 17 69521 69521 G A RPH3AL Missense_Mutation p.S207F 0.36 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 17 71165933 71165933 G A SSTR2 Missense_Mutation p.A159T 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 17 7128139 7128139 C A ACADVL Missense_Mutation p.S611Y 0.28 deleterious(0) probably_damaging(0.988) TCGA-FR-A7U9-06 17 71281577 71281577 G A CDC42EP4 Missense_Mutation p.R355C 0.20 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 17 71394264 71394264 C T SDK2 Silent p.K1088K 0.38 TCGA-FR-A7U9-06 17 71415417 71415417 C T SDK2 Missense_Mutation p.A692T 0.44 deleterious(0) probably_damaging(0.954) TCGA-FR-A7U9-06 17 7162860 7162860 C T ELP5 Intron 0.27 TCGA-FR-A7U9-06 17 7187985 7187985 C T SLC2A4 Silent p.I303I 0.40 TCGA-FR-A7U9-06 17 72691138 72691138 C T CD300LF 3'UTR 0.27 TCGA-FR-A7U9-06 17 73206055 73206055 T C NUP85 Silent p.L89L 0.13 TCGA-FR-A7U9-06 17 73482407 73482407 C T KIAA0195 Silent p.F103F 0.14 TCGA-FR-A7U9-06 17 7350429 7350429 T C CHRNB1 Missense_Mutation p.W141R 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 17 73813487 73813487 C T UNK Silent p.N395N 0.16 TCGA-FR-A7U9-06 17 73919661 73919661 G A FBF1 Missense_Mutation p.P329S 0.32 tolerated(0.09) benign(0.147) TCGA-FR-A7U9-06 17 74003454 74003454 G A EVPL Silent p.L1944L 0.28 TCGA-FR-A7U9-06 17 74019403 74019403 G A EVPL Silent p.V150V 0.25 TCGA-FR-A7U9-06 17 74287951 74287951 G A QRICH2 Nonsense_Mutation p.Q787* 0.23 TCGA-FR-A7U9-06 17 74774407 74774407 C T MFSD11 Silent p.A441A 0.20 TCGA-FR-A7U9-06 17 75212571 75212571 C T SEC14L1 Intron 0.37 TCGA-FR-A7U9-06 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.18 TCGA-FR-A7U9-06 17 77709041 77709041 C T ENPP7 Missense_Mutation p.S200F 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-FR-A7U9-06 17 77808573 77808573 G A CBX4 Missense_Mutation p.R290C 0.25 tolerated(0.09) possibly_damaging(0.649) TCGA-FR-A7U9-06 17 78063593 78063593 C T CCDC40 Silent p.I914I 0.32 TCGA-FR-A7U9-06 17 78321753 78321753 C T RNF213 Silent p.F3206F 0.28 TCGA-FR-A7U9-06 17 78398864 78398864 C T ENDOV Silent p.F183F 0.38 TCGA-FR-A7U9-06 17 7918319 7918319 G A GUCY2D Missense_Mutation p.D907N 0.38 deleterious(0.04) probably_damaging(1) TCGA-FR-A7U9-06 17 79514790 79514790 G A C17orf70 Intron 0.25 TCGA-FR-A7U9-06 17 80280087 80280087 G A SECTM1 Silent p.L233L 0.12 TCGA-FR-A7U9-06 17 80724167 80724167 C T TBCD Missense_Mutation p.R120C 0.54 deleterious(0) benign(0.4) TCGA-FR-A7U9-06 17 80789372 80789372 C T ZNF750 Missense_Mutation p.G320E 0.40 deleterious(0) probably_damaging(0.939) TCGA-FR-A7U9-06 17 8139627 8139627 G A CTC1 Missense_Mutation p.R276W 0.22 tolerated(0.15) benign(0.003) TCGA-FR-A7U9-06 17 8243630 8243630 C T ODF4 Silent p.L87L 0.33 TCGA-FR-A7U9-06 18 13826451 13826451 G A MC5R Silent p.R229R 0.21 TCGA-FR-A7U9-06 18 14791405 14791405 C T ANKRD30B Silent p.P580P 0.28 TCGA-FR-A7U9-06 18 19996655 19996655 C T CTAGE1 Missense_Mutation p.E374K 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-FR-A7U9-06 18 21427465 21427465 G A LAMA3 Silent p.T1323T 0.22 TCGA-FR-A7U9-06 18 2739437 2739437 C T SMCHD1 Missense_Mutation p.P1145S 0.12 tolerated(0.07) probably_damaging(0.958) TCGA-FR-A7U9-06 18 28654717 28654717 G A DSC2 Missense_Mutation p.P607L 0.22 deleterious(0) possibly_damaging(0.883) TCGA-FR-A7U9-06 18 28667695 28667695 C T DSC2 Missense_Mutation p.D238N 0.21 deleterious(0.04) probably_damaging(1) TCGA-FR-A7U9-06 18 28898206 28898206 G A DSG1 5'UTR 0.22 TCGA-FR-A7U9-06 18 28926134 28926134 G A DSG1 Missense_Mutation p.M691I 0.16 deleterious(0.01) possibly_damaging(0.659) TCGA-FR-A7U9-06 18 28966737 28966737 C T DSG4 Silent p.A57A 0.12 TCGA-FR-A7U9-06 18 28993115 28993115 A T DSG4 Missense_Mutation p.M913L 0.22 tolerated(0.42) benign(0.171) TCGA-FR-A7U9-06 18 29046573 29046573 G A DSG3 Missense_Mutation p.E498K 0.10 deleterious(0.02) benign(0.032) TCGA-FR-A7U9-06 18 30260168 30260168 C T KLHL14 Missense_Mutation p.D518N 0.25 tolerated(0.12) probably_damaging(0.956) TCGA-FR-A7U9-06 18 30903492 30903492 C T CCDC178 Missense_Mutation p.D329N 0.42 deleterious(0) probably_damaging(0.933) TCGA-FR-A7U9-06 18 31318525 31318525 C T ASXL3 Missense_Mutation p.S386L 0.18 benign(0.002) TCGA-FR-A7U9-06 18 31319046 31319046 G A ASXL3 Missense_Mutation p.E560K 0.20 benign(0.427) TCGA-FR-A7U9-06 18 31324903 31324903 G A ASXL3 Silent p.E1697E 0.19 TCGA-FR-A7U9-06 18 31325027 31325027 C T ASXL3 Missense_Mutation p.R1739C 0.10 probably_damaging(0.999) TCGA-FR-A7U9-06 18 3729340 3729340 G A DLGAP1 Silent p.S462S 0.23 TCGA-FR-A7U9-06 18 40503608 40503608 G A RIT2 Nonsense_Mutation p.Q119* 0.24 TCGA-FR-A7U9-06 18 42530518 42530518 C T SETBP1 Missense_Mutation p.P405S 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A7U9-06 18 43319609 43319609 C T SLC14A1 Missense_Mutation p.L366F 0.19 deleterious(0.03) benign(0.134) TCGA-FR-A7U9-06 18 44559830 44559830 T A TCEB3B Missense_Mutation p.K602N 0.30 deleterious(0) benign(0.131) TCGA-FR-A7U9-06 18 44682472 44682472 A T IER3IP1 3'UTR 0.12 TCGA-FR-A7U9-06 18 46287764 46287764 G A CTIF Missense_Mutation p.E361K 0.16 tolerated(0.06) benign(0.089) TCGA-FR-A7U9-06 18 47107876 47107876 C T LIPG Silent p.F295F 0.26 TCGA-FR-A7U9-06 18 47480795 47480795 C T MYO5B Missense_Mutation p.G519E 0.29 deleterious(0) probably_damaging(0.956) TCGA-FR-A7U9-06 18 48252354 48252354 C T MAPK4 Silent p.I292I 0.22 TCGA-FR-A7U9-06 18 48331652 48331652 G A MRO Missense_Mutation p.P115S 0.25 tolerated(0.36) benign(0.053) TCGA-FR-A7U9-06 18 48466697 48466697 G A ME2 Missense_Mutation p.G510R 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 18 50589787 50589787 G T DCC Missense_Mutation p.K366N 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 18 50929251 50929251 G A DCC Missense_Mutation p.G975R 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 18 51057009 51057009 G A DCC Missense_Mutation p.G1444S 0.22 tolerated(0.32) benign(0.191) TCGA-FR-A7U9-06 18 51880425 51880425 G A STARD6 Silent p.L47L 0.19 TCGA-FR-A7U9-06 18 56204544 56204544 C T ALPK2 Missense_Mutation p.G959R 0.24 tolerated(0.06) benign(0.037) TCGA-FR-A7U9-06 18 59221620 59221620 G A CDH20 Missense_Mutation p.D700N 0.13 tolerated(0.08) possibly_damaging(0.756) TCGA-FR-A7U9-06 18 59936144 59936144 C T KIAA1468 Missense_Mutation p.P908L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 18 61328459 61328459 C T SERPINB3 5'UTR 0.17 TCGA-FR-A7U9-06 18 61582805 61582805 G A SERPINB10 Missense_Mutation p.E21K 0.17 tolerated(0.18) possibly_damaging(0.886) TCGA-FR-A7U9-06 18 71749165 71749165 T A FBXO15 Silent p.I420I 0.22 TCGA-FR-A7U9-06 18 72228238 72228238 C T CNDP1 Silent p.L151L 0.24 TCGA-FR-A7U9-06 18 9887096 9887096 G A TXNDC2 Missense_Mutation p.G207D 0.19 deleterious(0.01) benign(0.216) TCGA-FR-A7U9-06 18 9887848 9887848 G A TXNDC2 Missense_Mutation p.D458N 0.17 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 19 1005536 1005536 G A GRIN3B Missense_Mutation p.G679E 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 10084463 10084463 C T COL5A3 Missense_Mutation p.G1194E 0.20 probably_damaging(0.988) TCGA-FR-A7U9-06 19 10089647 10089647 C T COL5A3 Missense_Mutation p.G962R 0.20 unknown(0) TCGA-FR-A7U9-06 19 10103508 10103508 G A COL5A3 Missense_Mutation p.R615C 0.24 unknown(0) TCGA-FR-A7U9-06 19 11034315 11034315 G A YIPF2 Silent p.L230L 0.33 TCGA-FR-A7U9-06 19 11446362 11446362 G A RAB3D Missense_Mutation p.S109F 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 11488616 11488616 T A EPOR 3'UTR 0.27 TCGA-FR-A7U9-06 19 11488617 11488617 C G EPOR 3'UTR 0.27 TCGA-FR-A7U9-06 19 11512751 11512751 G A RGL3 Silent p.L474L 0.25 TCGA-FR-A7U9-06 19 12089716 12089716 C T ZNF763 Missense_Mutation p.S329F 0.14 deleterious(0.04) probably_damaging(0.919) TCGA-FR-A7U9-06 19 13029076 13029076 C T SYCE2 Missense_Mutation p.E31K 0.28 tolerated_low_confidence(0.12) benign(0.005) TCGA-FR-A7U9-06 19 13051096 13051096 C T CALR Missense_Mutation p.P178S 0.15 tolerated(0.06) probably_damaging(0.917) TCGA-FR-A7U9-06 19 13051097 13051097 C T CALR Missense_Mutation p.P178L 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 13616902 13616902 C T CACNA1A Missense_Mutation p.R46K 0.28 benign(0.14) TCGA-FR-A7U9-06 19 13879836 13879836 T G MRI1 Missense_Mutation p.V308G 0.46 deleterious(0.01) possibly_damaging(0.653) TCGA-FR-A7U9-06 19 14104685 14104685 A G RFX1 5'UTR 0.22 TCGA-FR-A7U9-06 19 14991825 14991825 G A OR7A17 Silent p.L115L 0.27 TCGA-FR-A7U9-06 19 15065069 15065069 G A SLC1A6 Silent p.F414F 0.14 TCGA-FR-A7U9-06 19 15276657 15276657 G A NOTCH3 Missense_Mutation p.H1870Y 0.37 deleterious(0) probably_damaging(0.963) TCGA-FR-A7U9-06 19 15383775 15383775 G A BRD4 Missense_Mutation p.P46S 0.32 unknown(0) TCGA-FR-A7U9-06 19 15587388 15587388 G A PGLYRP2 Silent p.I31I 0.21 TCGA-FR-A7U9-06 19 15730341 15730341 G A AD000091.2 5'Flank 0.10 TCGA-FR-A7U9-06 19 15839109 15839109 C T OR10H2 Silent p.L86L 0.17 TCGA-FR-A7U9-06 19 15990462 15990462 G A CYP4F2 Silent p.I422I 0.22 TCGA-FR-A7U9-06 19 15990611 15990611 C T CYP4F2 Silent p.Q404Q 0.20 TCGA-FR-A7U9-06 19 16024617 16024617 C T CYP4F11 Silent p.R500R 0.24 TCGA-FR-A7U9-06 19 16060159 16060159 C T OR10H4 Silent p.F114F 0.29 TCGA-FR-A7U9-06 19 17025514 17025514 C T CPAMD8 Missense_Mutation p.D1294N 0.31 tolerated(0.35) benign(0.167) TCGA-FR-A7U9-06 19 17296784 17296784 C T MYO9B Missense_Mutation p.R851C 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A7U9-06 19 17438294 17438294 G A ANO8 Missense_Mutation p.P835S 0.21 deleterious(0.01) unknown(0) TCGA-FR-A7U9-06 19 17988803 17988803 C T SLC5A5 Silent p.F290F 0.17 TCGA-FR-A7U9-06 19 18888221 18888221 C T CRTC1 3'UTR 0.30 TCGA-FR-A7U9-06 19 19329732 19329732 G A NCAN Missense_Mutation p.D28N 0.19 tolerated(0.1) benign(0.002) TCGA-FR-A7U9-06 19 19650528 19650528 C T CILP2 Silent p.G35G 0.18 TCGA-FR-A7U9-06 19 19746221 19746221 C A GMIP Intron 0.17 TCGA-FR-A7U9-06 19 19824904 19824904 G A ZNF14 Nonsense_Mutation p.R63* 0.22 TCGA-FR-A7U9-06 19 20228946 20228946 C T ZNF90 Missense_Mutation p.H195Y 0.23 tolerated(0.15) benign(0.041) TCGA-FR-A7U9-06 19 21475864 21475864 T A ZNF708 3'UTR 0.40 TCGA-FR-A7U9-06 19 21606876 21606876 G A ZNF493 Missense_Mutation p.R472Q 0.24 tolerated(0.78) benign(0.002) TCGA-FR-A7U9-06 19 21992254 21992254 A T ZNF43 Silent p.I195I 0.28 TCGA-FR-A7U9-06 19 2213503 2213503 C T DOT1L Intron 0.32 TCGA-FR-A7U9-06 19 22154784 22154784 C T ZNF208 Missense_Mutation p.E1018K 0.21 tolerated(0.99) benign(0.001) TCGA-FR-A7U9-06 19 22154785 22154785 C T ZNF208 Missense_Mutation p.M1017I 0.22 tolerated(0.79) benign(0) TCGA-FR-A7U9-06 19 22155968 22155968 G A ZNF208 Missense_Mutation p.T623I 0.34 tolerated(0.22) benign(0) TCGA-FR-A7U9-06 19 22847897 22847897 C T ZNF492 Missense_Mutation p.P476S 0.13 deleterious(0.03) probably_damaging(0.985) TCGA-FR-A7U9-06 19 22939782 22939782 A T ZNF99 3'Flank 0.30 TCGA-FR-A7U9-06 19 2351460 2351460 C T LLfos-48D6.1 3'Flank 0.26 TCGA-FR-A7U9-06 19 3546394 3546394 G A MFSD12 Silent p.I351I 0.50 TCGA-FR-A7U9-06 19 35504577 35504577 C T GRAMD1A Silent p.S284S 0.20 TCGA-FR-A7U9-06 19 35739808 35739808 G A LSR Silent p.G9G 0.27 TCGA-FR-A7U9-06 19 36222949 36222949 T A KMT2B Missense_Mutation p.F1860I 0.31 benign(0.028) TCGA-FR-A7U9-06 19 36229346 36229346 G A KMT2B Missense_Mutation p.R2679H 0.11 probably_damaging(0.991) TCGA-FR-A7U9-06 19 36362832 36362832 C T APLP1 Silent p.S248S 0.27 TCGA-FR-A7U9-06 19 36616794 36616794 C T TBCB 3'UTR 0.25 TCGA-FR-A7U9-06 19 37676542 37676542 G A ZNF585B Missense_Mutation p.P633S 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A7U9-06 19 3779050 3779050 C T MATK Silent p.K380K 0.22 TCGA-FR-A7U9-06 19 38028431 38028431 G A ZNF793 Missense_Mutation p.A291T 0.20 tolerated(0.18) possibly_damaging(0.751) TCGA-FR-A7U9-06 19 38231032 38231032 G A ZNF573 Missense_Mutation p.S120F 0.16 tolerated(0.22) possibly_damaging(0.466) TCGA-FR-A7U9-06 19 38572697 38572697 C T SIPA1L3 Silent p.L164L 0.26 TCGA-FR-A7U9-06 19 3905617 3905617 G A ATCAY Missense_Mutation p.E108K 0.20 deleterious(0.02) benign(0.305) TCGA-FR-A7U9-06 19 39096362 39096362 G A MAP4K1 Silent p.F403F 0.32 TCGA-FR-A7U9-06 19 39219769 39219769 C T ACTN4 Missense_Mutation p.S851F 0.19 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 19 39421248 39421248 G A SARS2 Silent p.L43L 0.31 TCGA-FR-A7U9-06 19 3942167 3942167 G A NMRK2 Missense_Mutation p.E197K 0.43 tolerated_low_confidence(0.4) benign(0.017) TCGA-FR-A7U9-06 19 3982904 3982904 G A EEF2 Silent p.P171P 0.22 TCGA-FR-A7U9-06 19 39909598 39909598 C T PLEKHG2 Silent p.L406L 0.21 TCGA-FR-A7U9-06 19 40172087 40172087 G A AC093063.3 5'Flank 0.22 TCGA-FR-A7U9-06 19 40901567 40901567 C T PRX Missense_Mutation p.V898M 0.23 tolerated(0.83) possibly_damaging(0.781) TCGA-FR-A7U9-06 19 40901569 40901569 C A PRX Missense_Mutation p.R897L 0.21 deleterious(0.01) benign(0.433) TCGA-FR-A7U9-06 19 41512885 41512885 G A CYP2B6 Missense_Mutation p.R187Q 0.26 deleterious(0.01) possibly_damaging(0.888) TCGA-FR-A7U9-06 19 42126968 42126968 G C CEACAM4 Missense_Mutation p.P192R 0.14 tolerated(0.86) benign(0) TCGA-FR-A7U9-06 19 42880557 42880557 C T MEGF8 Missense_Mutation p.P2656L 0.23 tolerated(0.1) benign(0.088) TCGA-FR-A7U9-06 19 43372245 43372245 C T PSG1 Nonsense_Mutation p.W417* 0.21 TCGA-FR-A7U9-06 19 43579760 43579760 G A PSG2 Missense_Mutation p.S152F 0.20 deleterious(0) probably_damaging(0.91) TCGA-FR-A7U9-06 19 43697480 43697480 C T PSG4 3'UTR 0.14 TCGA-FR-A7U9-06 19 44030308 44030308 G A ETHE1 Intron 0.28 TCGA-FR-A7U9-06 19 44791922 44791922 A C ZNF235 Missense_Mutation p.L556V 0.30 tolerated(0.32) probably_damaging(0.973) TCGA-FR-A7U9-06 19 44793264 44793264 G A ZNF235 Silent p.I108I 0.27 TCGA-FR-A7U9-06 19 44833369 44833369 G A ZNF112 Missense_Mutation p.S320F 0.25 deleterious(0.02) possibly_damaging(0.778) TCGA-FR-A7U9-06 19 4523481 4523481 G A PLIN5 3'UTR 0.25 TCGA-FR-A7U9-06 19 45284233 45284233 G A CBLC Missense_Mutation p.G142E 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 4529007 4529007 C A PLIN5 Intron 0.23 TCGA-FR-A7U9-06 19 46842921 46842921 G A HIF3A 3'UTR 0.36 TCGA-FR-A7U9-06 19 46878977 46878977 C T PPP5C Silent p.S160S 0.31 TCGA-FR-A7U9-06 19 47181744 47181744 G T PRKD2 Missense_Mutation p.F749L 0.14 deleterious(0.02) possibly_damaging(0.891) TCGA-FR-A7U9-06 19 47823469 47823469 G A C5AR1 Silent p.Q145Q 0.14 TCGA-FR-A7U9-06 19 48305089 48305089 C T TPRX1 Silent p.E393E 0.11 TCGA-FR-A7U9-06 19 48537527 48537527 G A CABP5 Silent p.I147I 0.21 TCGA-FR-A7U9-06 19 48806051 48806051 C T CCDC114 Silent p.Q343Q 0.24 TCGA-FR-A7U9-06 19 48908255 48908255 C T GRIN2D Missense_Mutation p.R244C 0.20 tolerated(0.18) benign(0.27) TCGA-FR-A7U9-06 19 49005727 49005727 C T LMTK3 Missense_Mutation p.G282R 0.26 probably_damaging(1) TCGA-FR-A7U9-06 19 49134252 49134252 C T DBP Missense_Mutation p.D274N 0.22 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 19 49669434 49669434 G A TRPM4 Missense_Mutation p.E77K 0.27 deleterious(0) possibly_damaging(0.616) TCGA-FR-A7U9-06 19 50216084 50216084 C T CPT1C Missense_Mutation p.S704F 0.24 deleterious(0) probably_damaging(0.922) TCGA-FR-A7U9-06 19 50266452 50266452 G A TSKS Missense_Mutation p.A18V 0.20 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 19 50334019 50334019 C T MED25 Missense_Mutation p.P326S 0.15 tolerated(0.46) benign(0.14) TCGA-FR-A7U9-06 19 50462151 50462151 T A SIGLEC11 Missense_Mutation p.E371V 0.24 deleterious(0) probably_damaging(0.964) TCGA-FR-A7U9-06 19 50547970 50547970 C T ZNF473 Silent p.F90F 0.22 TCGA-FR-A7U9-06 19 50985417 50985417 C T EMC10 Silent p.I230I 0.29 TCGA-FR-A7U9-06 19 51330998 51330998 G A KLK15 Silent p.L39L 0.25 TCGA-FR-A7U9-06 19 51330999 51330999 A G KLK15 Missense_Mutation p.L39P 0.25 deleterious(0) probably_damaging(0.989) TCGA-FR-A7U9-06 19 51506276 51506276 G A KLK9 3'UTR 0.12 TCGA-FR-A7U9-06 19 51981875 51981875 C T CEACAM18 Silent p.L54L 0.37 TCGA-FR-A7U9-06 19 52001269 52001269 C T SIGLEC12 Intron 0.14 TCGA-FR-A7U9-06 19 52130784 52130784 C T SIGLEC5 Missense_Mutation p.D405N 0.25 tolerated(0.22) benign(0.271) TCGA-FR-A7U9-06 19 52272097 52272097 C T FPR2 Silent p.I62I 0.21 TCGA-FR-A7U9-06 19 52569028 52569028 G A ZNF841 Missense_Mutation p.P703S 0.20 deleterious(0.01) possibly_damaging(0.525) TCGA-FR-A7U9-06 19 53014281 53014281 C T ZNF578 Missense_Mutation p.S216L 0.27 tolerated(0.08) probably_damaging(0.99) TCGA-FR-A7U9-06 19 53344838 53344838 G A ZNF468 Missense_Mutation p.H237Y 0.20 deleterious(0.02) benign(0.371) TCGA-FR-A7U9-06 19 53572784 53572784 G A ZNF160 Missense_Mutation p.H335Y 0.28 deleterious(0) probably_damaging(0.917) TCGA-FR-A7U9-06 19 54080454 54080454 C T ZNF331 Missense_Mutation p.P214S 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A7U9-06 19 54080455 54080455 C T ZNF331 Missense_Mutation p.P214L 0.28 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 19 54188267 54188267 A T MIR515-2 RNA 0.14 TCGA-FR-A7U9-06 19 54201726 54201726 A G MIR525 3'Flank 0.18 TCGA-FR-A7U9-06 19 54261532 54261532 G A MIR1283-2 RNA 0.26 TCGA-FR-A7U9-06 19 54395818 54395818 G A PRKCG Missense_Mutation p.D248N 0.52 deleterious(0.04) possibly_damaging(0.887) TCGA-FR-A7U9-06 19 54410175 54410175 C T PRKCG 3'UTR 0.14 TCGA-FR-A7U9-06 19 5455626 5455626 C T ZNRF4 Missense_Mutation p.P42S 0.26 deleterious_low_confidence(0.02) benign(0.001) TCGA-FR-A7U9-06 19 54760514 54760514 G A LILRB5 Missense_Mutation p.L65F 0.22 tolerated(0.15) benign(0.131) TCGA-FR-A7U9-06 19 54802201 54802201 G A LILRA3 Silent p.S329S 0.56 TCGA-FR-A7U9-06 19 55174998 55174998 C G LILRB4 Missense_Mutation p.L15V 0.17 tolerated_low_confidence(0.35) benign(0.13) TCGA-FR-A7U9-06 19 55176592 55176592 G A LILRB4 Missense_Mutation p.D240N 0.38 tolerated(0.1) possibly_damaging(0.543) TCGA-FR-A7U9-06 19 55253643 55253643 G A KIR2DL3 Silent p.G96G 0.30 TCGA-FR-A7U9-06 19 55385733 55385733 C T FCAR 5'Flank 0.10 TCGA-FR-A7U9-06 19 55439030 55439030 C T NLRP7 Missense_Mutation p.G975D 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 55450375 55450375 C T NLRP7 Silent p.V604V 0.20 TCGA-FR-A7U9-06 19 55451347 55451347 G A NLRP7 Silent p.P280P 0.16 TCGA-FR-A7U9-06 19 55493985 55493985 G A NLRP2 Missense_Mutation p.D307N 0.18 tolerated(0.06) possibly_damaging(0.766) TCGA-FR-A7U9-06 19 55756738 55756738 G A PPP6R1 Silent p.F149F 0.26 TCGA-FR-A7U9-06 19 55823323 55823323 C T BRSK1 Nonsense_Mutation p.R742* 0.38 TCGA-FR-A7U9-06 19 56241264 56241264 C T NLRP9 Missense_Mutation p.D643N 0.24 tolerated(1) benign(0.014) TCGA-FR-A7U9-06 19 56243946 56243946 C T NLRP9 Silent p.R417R 0.11 TCGA-FR-A7U9-06 19 56321356 56321356 C T NLRP11 Nonsense_Mutation p.W207* 0.21 TCGA-FR-A7U9-06 19 56466360 56466360 G C NLRP8 Silent p.G312G 0.27 TCGA-FR-A7U9-06 19 56466945 56466945 C T NLRP8 Silent p.L507L 0.24 TCGA-FR-A7U9-06 19 56565049 56565049 C T NLRP5 Silent p.S1058S 0.21 TCGA-FR-A7U9-06 19 56701927 56701927 C T ZSCAN5B Missense_Mutation p.E253K 0.20 tolerated(0.09) possibly_damaging(0.524) TCGA-FR-A7U9-06 19 57640271 57640271 G A USP29 Silent p.L76L 0.18 TCGA-FR-A7U9-06 19 57641114 57641114 C T USP29 Silent p.V357V 0.32 TCGA-FR-A7U9-06 19 57642615 57642615 G A USP29 Missense_Mutation p.D858N 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 19 57646385 57646385 G A ZIM3 Silent p.T440T 0.24 TCGA-FR-A7U9-06 19 57868953 57868953 C T ZNF304 Silent p.S572S 0.21 TCGA-FR-A7U9-06 19 58048653 58048653 C T ZNF549 Missense_Mutation p.P94L 0.23 tolerated(0.11) benign(0.099) TCGA-FR-A7U9-06 19 58549312 58549312 C T ZSCAN1 Silent p.A36A 0.18 TCGA-FR-A7U9-06 19 58564815 58564815 C T ZSCAN1 Missense_Mutation p.P208L 0.16 deleterious(0.03) benign(0.076) TCGA-FR-A7U9-06 19 58578279 58578279 C T ZNF135 Silent p.L167L 0.19 TCGA-FR-A7U9-06 19 58863703 58863703 C T A1BG Missense_Mutation p.D187N 0.23 tolerated(0.09) benign(0.004) TCGA-FR-A7U9-06 19 6495131 6495131 G A TUBB4A 3'UTR 0.35 TCGA-FR-A7U9-06 19 6679480 6679480 G T C3 Missense_Mutation p.P1495Q 0.19 deleterious(0.02) probably_damaging(0.96) TCGA-FR-A7U9-06 19 6733290 6733290 G A GPR108 Missense_Mutation p.P249L 0.25 deleterious(0.02) possibly_damaging(0.593) TCGA-FR-A7U9-06 19 6984804 6984804 C T EMR4P RNA 0.21 TCGA-FR-A7U9-06 19 7806817 7806817 G A CD209 3'UTR 0.38 TCGA-FR-A7U9-06 19 8620626 8620626 C T MYO1F Missense_Mutation p.D20N 0.20 deleterious(0) possibly_damaging(0.903) TCGA-FR-A7U9-06 19 8651569 8651569 C T ADAMTS10 Missense_Mutation p.G759E 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 8651570 8651570 C T ADAMTS10 Missense_Mutation p.G759R 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 19 880007 880007 G A MED16 Missense_Mutation p.A428V 0.29 tolerated(0.56) benign(0.379) TCGA-FR-A7U9-06 19 9005692 9005692 G A MUC16 Silent p.I13238I 0.17 TCGA-FR-A7U9-06 19 9014647 9014647 G A MUC16 Silent p.D12776D 0.30 TCGA-FR-A7U9-06 19 9057871 9057871 G A MUC16 Missense_Mutation p.P9859S 0.30 unknown(0) TCGA-FR-A7U9-06 19 9061081 9061081 G A MUC16 Missense_Mutation p.P8789S 0.28 unknown(0) TCGA-FR-A7U9-06 19 9061733 9061733 G A MUC16 Silent p.T8571T 0.36 TCGA-FR-A7U9-06 19 9063528 9063528 G A MUC16 Missense_Mutation p.S7973F 0.29 unknown(0) TCGA-FR-A7U9-06 19 9065158 9065158 G A MUC16 Nonsense_Mutation p.Q7430* 0.34 TCGA-FR-A7U9-06 19 9065860 9065860 G A MUC16 Missense_Mutation p.P7196S 0.15 unknown(0) TCGA-FR-A7U9-06 19 9066293 9066293 G A MUC16 Silent p.T7051T 0.30 TCGA-FR-A7U9-06 19 9067221 9067221 G A MUC16 Missense_Mutation p.P6742L 0.20 unknown(0) TCGA-FR-A7U9-06 19 9067306 9067306 A T MUC16 Missense_Mutation p.S6714T 0.30 unknown(0) TCGA-FR-A7U9-06 19 9067931 9067931 C T MUC16 Silent p.V6505V 0.28 TCGA-FR-A7U9-06 19 9068600 9068600 G A MUC16 Silent p.T6282T 0.15 TCGA-FR-A7U9-06 19 9071105 9071105 C T MUC16 Silent p.S5447S 0.31 TCGA-FR-A7U9-06 19 9071394 9071394 G A MUC16 Missense_Mutation p.S5351F 0.26 unknown(0) TCGA-FR-A7U9-06 19 9071567 9071567 G A MUC16 Silent p.S5293S 0.27 TCGA-FR-A7U9-06 19 9074862 9074862 G A MUC16 Missense_Mutation p.S4195F 0.24 unknown(0) TCGA-FR-A7U9-06 19 9076554 9076554 G A MUC16 Missense_Mutation p.P3631L 0.29 unknown(0) TCGA-FR-A7U9-06 19 9084607 9084607 G A MUC16 Missense_Mutation p.S2403F 0.20 unknown(0) TCGA-FR-A7U9-06 19 9086390 9086390 C T MUC16 Missense_Mutation p.E1809K 0.20 unknown(0) TCGA-FR-A7U9-06 19 9213077 9213077 G A OR7G2 Silent p.F302F 0.22 TCGA-FR-A7U9-06 19 9526348 9526348 G A ZNF266 Silent p.T62T 0.21 TCGA-FR-A7U9-06 19 9801170 9801170 C T ZNF812 Missense_Mutation p.E337K 0.15 tolerated(0.13) benign(0.183) TCGA-FR-A7U9-06 19 9801894 9801894 G A ZNF812 Silent p.F95F 0.26 TCGA-FR-A7U9-06 19 9875494 9875494 T C ZNF846 Intron 0.22 TCGA-FR-A7U9-06 1 101190217 101190217 C T VCAM1 Silent p.S233S 0.30 TCGA-FR-A7U9-06 1 101705584 101705584 G A S1PR1 Missense_Mutation p.M348I 0.19 tolerated(0.27) benign(0) TCGA-FR-A7U9-06 1 103468802 103468802 G A COL11A1 Missense_Mutation p.P656L 0.26 unknown(0) TCGA-FR-A7U9-06 1 103474059 103474059 G A COL11A1 Missense_Mutation p.S548L 0.23 unknown(0) TCGA-FR-A7U9-06 1 10710765 10710765 G A CASZ1 Missense_Mutation p.S955F 0.25 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-FR-A7U9-06 1 109270551 109270551 G A FNDC7 Missense_Mutation p.M411I 0.27 tolerated(0.11) benign(0) TCGA-FR-A7U9-06 1 109740203 109740203 C T KIAA1324 Silent p.I743I 0.22 TCGA-FR-A7U9-06 1 110049935 110049935 C T AMIGO1 3'UTR 0.19 TCGA-FR-A7U9-06 1 110086019 110086019 T C GPR61 Silent p.F125F 0.18 TCGA-FR-A7U9-06 1 110155522 110155522 C T GNAT2 5'UTR 0.28 TCGA-FR-A7U9-06 1 110741137 110741137 C T SLC6A17 3'UTR 0.19 TCGA-FR-A7U9-06 1 111061264 111061264 C T KCNA10 Missense_Mutation p.G49E 0.11 deleterious_low_confidence(0.04) benign(0) TCGA-FR-A7U9-06 1 111784954 111784954 C T CHI3L2 Nonsense_Mutation p.Q381* 0.10 TCGA-FR-A7U9-06 1 111862832 111862832 C T CHIA Intron 0.14 TCGA-FR-A7U9-06 1 112525202 112525202 C T KCND3 Silent p.R49R 0.16 TCGA-FR-A7U9-06 1 113232647 113232647 C T MOV10 Missense_Mutation p.P255S 0.19 deleterious(0.02) possibly_damaging(0.465) TCGA-FR-A7U9-06 1 115828701 115828701 C T NGF Missense_Mutation p.R239K 0.33 deleterious(0.01) benign(0.011) TCGA-FR-A7U9-06 1 115828966 115828966 C T NGF Missense_Mutation p.D151N 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 116577822 116577822 T C SLC22A15 Missense_Mutation p.L320S 0.16 deleterious(0) possibly_damaging(0.745) TCGA-FR-A7U9-06 1 117654957 117654957 C T TRIM45 Silent p.P571P 0.18 TCGA-FR-A7U9-06 1 11766476 11766476 C T DRAXIN Missense_Mutation p.A54V 0.35 deleterious(0.03) possibly_damaging(0.53) TCGA-FR-A7U9-06 1 118624248 118624248 C T SPAG17 Missense_Mutation p.E594K 0.24 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 1 119575778 119575778 G A WARS2 Missense_Mutation p.A280V 0.22 deleterious(0) possibly_damaging(0.715) TCGA-FR-A7U9-06 1 120056959 120056959 C T HSD3B1 Silent p.T271T 0.26 TCGA-FR-A7U9-06 1 12806483 12806483 G A C1orf158 Silent p.R35R 0.32 TCGA-FR-A7U9-06 1 12837366 12837366 G A PRAMEF12 Missense_Mutation p.G359E 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-FR-A7U9-06 1 12943180 12943180 C T PRAMEF4 Silent p.L12L 0.22 TCGA-FR-A7U9-06 1 1323227 1323227 G A CCNL2 Missense_Mutation p.R381W 0.22 deleterious(0) possibly_damaging(0.551) TCGA-FR-A7U9-06 1 145532791 145532791 G A ITGA10 Silent p.L370L 0.31 TCGA-FR-A7U9-06 1 145558251 145558251 C T ANKRD35 Missense_Mutation p.P123L 0.39 deleterious(0.03) possibly_damaging(0.908) TCGA-FR-A7U9-06 1 149903192 149903192 G A MTMR11 Missense_Mutation p.P417L 0.09 tolerated(0.06) probably_damaging(1) TCGA-FR-A7U9-06 1 150129179 150129179 C T PLEKHO1 Silent p.I131I 0.12 TCGA-FR-A7U9-06 1 150429861 150429861 C T RPRD2 Missense_Mutation p.S323F 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A7U9-06 1 150444973 150444973 C T RPRD2 Silent p.S1183S 0.09 TCGA-FR-A7U9-06 1 150483343 150483343 C T ECM1 Intron 0.25 TCGA-FR-A7U9-06 1 150705459 150705459 G A CTSS 3'UTR 0.23 TCGA-FR-A7U9-06 1 150960656 150960656 G A ANXA9 Missense_Mutation p.G263S 0.27 tolerated(1) benign(0.008) TCGA-FR-A7U9-06 1 151314827 151314827 G A RFX5 Silent p.P562P 0.33 TCGA-FR-A7U9-06 1 151509750 151509750 C T CGN Silent p.F1180F 0.13 TCGA-FR-A7U9-06 1 152058211 152058211 G A TCHHL1 Silent p.P649P 0.27 TCGA-FR-A7U9-06 1 152081094 152081094 G A TCHH Silent p.F1533F 0.40 TCGA-FR-A7U9-06 1 152187617 152187617 C T HRNR Missense_Mutation p.G2163E 0.03 unknown(0) TCGA-FR-A7U9-06 1 152279174 152279174 C T FLG Missense_Mutation p.E2730K 0.22 benign(0.064) TCGA-FR-A7U9-06 1 152324967 152324967 C T FLG2 Silent p.E1765E 0.28 TCGA-FR-A7U9-06 1 152326267 152326267 G A FLG2 Missense_Mutation p.S1332F 0.27 possibly_damaging(0.54) TCGA-FR-A7U9-06 1 152326273 152326273 C T FLG2 Missense_Mutation p.G1330E 0.27 possibly_damaging(0.694) TCGA-FR-A7U9-06 1 152329393 152329393 C T FLG2 Missense_Mutation p.R290K 0.11 unknown(0) TCGA-FR-A7U9-06 1 152777643 152777643 G A LCE1C Silent p.S104S 0.34 TCGA-FR-A7U9-06 1 153012733 153012733 C T SPRR2D Silent p.P30P 0.14 TCGA-FR-A7U9-06 1 153312870 153312870 C T PGLYRP4 Missense_Mutation p.D271N 0.11 deleterious(0.03) probably_damaging(1) TCGA-FR-A7U9-06 1 153752355 153752355 T A SLC27A3 Missense_Mutation p.N690K 0.32 tolerated(0.33) benign(0.001) TCGA-FR-A7U9-06 1 153924655 153924655 G A CRTC2 Missense_Mutation p.T279I 0.36 tolerated(0.06) probably_damaging(0.99) TCGA-FR-A7U9-06 1 155041598 155041598 C T EFNA4 Silent p.I191I 0.30 TCGA-FR-A7U9-06 1 155059031 155059031 C T EFNA3 3'UTR 0.12 TCGA-FR-A7U9-06 1 155230185 155230185 C T SCAMP3 Silent p.R108R 0.39 TCGA-FR-A7U9-06 1 155736246 155736246 G A GON4L Silent p.I1006I 0.24 TCGA-FR-A7U9-06 1 157494336 157494336 G A FCRL5 Missense_Mutation p.R658C 0.22 deleterious(0.04) benign(0.262) TCGA-FR-A7U9-06 1 157514669 157514669 C T FCRL5 Missense_Mutation p.E171K 0.19 tolerated(0.91) benign(0.006) TCGA-FR-A7U9-06 1 157803081 157803081 G A CD5L Missense_Mutation p.R314C 0.12 deleterious(0.04) benign(0.027) TCGA-FR-A7U9-06 1 158324411 158324411 C T CD1E Silent p.F101F 0.15 TCGA-FR-A7U9-06 1 158589995 158589995 C T SPTA1 Missense_Mutation p.E2128K 0.22 deleterious(0) possibly_damaging(0.805) TCGA-FR-A7U9-06 1 158644402 158644402 C T SPTA1 Silent p.A392A 0.15 TCGA-FR-A7U9-06 1 158670244 158670244 A C OR6K2 Missense_Mutation p.S67A 0.22 tolerated(0.06) benign(0.115) TCGA-FR-A7U9-06 1 159175247 159175247 C T DARC Silent p.L8L 0.14 TCGA-FR-A7U9-06 1 159283508 159283508 C T OR10J3 Missense_Mutation p.M314I 0.14 tolerated(0.21) benign(0.006) TCGA-FR-A7U9-06 1 159505612 159505612 G A OR10J5 Silent p.F62F 0.14 TCGA-FR-A7U9-06 1 159558199 159558199 G A APCS Missense_Mutation p.E125K 0.13 deleterious(0) probably_damaging(0.947) TCGA-FR-A7U9-06 1 159858270 159858270 G A CCDC19 Missense_Mutation p.P97S 0.21 deleterious(0.02) benign(0.295) TCGA-FR-A7U9-06 1 160106106 160106106 C T ATP1A2 Nonsense_Mutation p.Q837* 0.18 TCGA-FR-A7U9-06 1 160143455 160143455 G A ATP1A4 Missense_Mutation p.A647T 0.15 deleterious(0.04) benign(0.363) TCGA-FR-A7U9-06 1 160165740 160165740 C T CASQ1 Silent p.F235F 0.14 TCGA-FR-A7U9-06 1 16091635 16091635 G A FBLIM1 Missense_Mutation p.E53K 0.21 tolerated(0.65) benign(0.161) TCGA-FR-A7U9-06 1 160970095 160970095 G A F11R Silent p.T144T 0.17 TCGA-FR-A7U9-06 1 16111221 16111221 C T FBLIM1 3'UTR 0.24 TCGA-FR-A7U9-06 1 161681910 161681910 C T FCRLA Missense_Mutation p.T252I 0.14 tolerated(0.05) benign(0.082) TCGA-FR-A7U9-06 1 162337147 162337147 G A NOS1AP Missense_Mutation p.D471N 0.38 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-FR-A7U9-06 1 163122410 163122410 G A RGS5 Missense_Mutation p.S105F 0.13 deleterious(0.01) benign(0.179) TCGA-FR-A7U9-06 1 165173024 165173024 T A LMX1A 3'UTR 0.27 TCGA-FR-A7U9-06 1 165173121 165173121 G A LMX1A Missense_Mutation p.S382F 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 1 168698349 168698349 C T DPT Missense_Mutation p.D22N 0.14 tolerated_low_confidence(0.49) benign(0.007) TCGA-FR-A7U9-06 1 170955761 170955761 G A MROH9 Missense_Mutation p.M263I 0.12 tolerated(0.17) benign(0.381) TCGA-FR-A7U9-06 1 171605119 171605119 A T MYOC Missense_Mutation p.F487L 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A7U9-06 1 172628372 172628372 C T FASLG Nonsense_Mutation p.Q11* 0.20 TCGA-FR-A7U9-06 1 172628550 172628550 C T FASLG Missense_Mutation p.P70L 0.17 tolerated(0.31) benign(0.003) TCGA-FR-A7U9-06 1 173545892 173545892 A T SLC9C2 Missense_Mutation p.F270L 0.19 tolerated(0.54) benign(0.006) TCGA-FR-A7U9-06 1 17603100 17603100 G A PADI3 Nonsense_Mutation p.W465* 0.13 TCGA-FR-A7U9-06 1 176054934 176054934 A G RFWD2 Silent p.S373S 0.18 TCGA-FR-A7U9-06 1 176640133 176640133 G A PAPPA2 Silent p.K673K 0.16 TCGA-FR-A7U9-06 1 176833348 176833348 C T ASTN1 3'UTR 0.20 TCGA-FR-A7U9-06 1 177247745 177247745 G A BRINP2 Silent p.L353L 0.17 TCGA-FR-A7U9-06 1 17740200 17740200 G A RCC2 Missense_Mutation p.S347F 0.10 deleterious(0) possibly_damaging(0.896) TCGA-FR-A7U9-06 1 179078390 179078390 G A ABL2 Missense_Mutation p.S671F 0.15 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 1 179398701 179398701 G A AXDND1 Missense_Mutation p.E427K 0.09 deleterious(0.02) possibly_damaging(0.636) TCGA-FR-A7U9-06 1 180832980 180832980 C T XPR1 Silent p.F546F 0.09 TCGA-FR-A7U9-06 1 181480519 181480519 C T CACNA1E Missense_Mutation p.P129S 0.11 deleterious(0.04) possibly_damaging(0.876) TCGA-FR-A7U9-06 1 181480520 181480520 C T CACNA1E Missense_Mutation p.P129L 0.11 deleterious(0.02) possibly_damaging(0.908) TCGA-FR-A7U9-06 1 181480590 181480590 G A CACNA1E Silent p.K152K 0.15 TCGA-FR-A7U9-06 1 18149669 18149669 G A ACTL8 Missense_Mutation p.D56N 0.26 tolerated(0.19) benign(0.023) TCGA-FR-A7U9-06 1 18149806 18149806 G A ACTL8 Silent p.T101T 0.27 TCGA-FR-A7U9-06 1 181725215 181725215 G A CACNA1E Silent p.G1371G 0.21 TCGA-FR-A7U9-06 1 181725216 181725216 G A CACNA1E Missense_Mutation p.E1372K 0.16 deleterious(0) possibly_damaging(0.893) TCGA-FR-A7U9-06 1 181741296 181741296 G A CACNA1E Missense_Mutation p.E1690K 0.16 tolerated(0.45) possibly_damaging(0.635) TCGA-FR-A7U9-06 1 185278253 185278253 G A IVNS1ABP Missense_Mutation p.P55S 0.12 deleterious(0.05) probably_damaging(0.971) TCGA-FR-A7U9-06 1 186057118 186057118 G A HMCN1 Missense_Mutation p.D3140N 0.21 probably_damaging(0.99) TCGA-FR-A7U9-06 1 186120819 186120819 G A HMCN1 Missense_Mutation p.G4947D 0.14 probably_damaging(0.999) TCGA-FR-A7U9-06 1 18702868 18702868 G A IGSF21 Silent p.R360R 0.26 TCGA-FR-A7U9-06 1 19018282 19018282 G A PAX7 Silent p.S207S 0.38 TCGA-FR-A7U9-06 1 19018283 19018283 G A PAX7 Missense_Mutation p.E208K 0.38 deleterious(0) benign(0.199) TCGA-FR-A7U9-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.25 TCGA-FR-A7U9-06 1 1961041 1961041 C T GABRD Missense_Mutation p.S300F 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 1 19611563 19611563 G A AKR7A3 Missense_Mutation p.P185S 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-FR-A7U9-06 1 196749066 196749066 G A CFHR3 Silent p.E131E 0.12 TCGA-FR-A7U9-06 1 196977829 196977829 C T CFHR5 3'UTR 0.12 TCGA-FR-A7U9-06 1 197150238 197150238 G A ZBTB41 Missense_Mutation p.P519L 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 200956007 200956007 C T KIF21B Silent p.T1218T 0.11 TCGA-FR-A7U9-06 1 200974564 200974564 G A KIF21B Nonsense_Mutation p.Q202* 0.12 TCGA-FR-A7U9-06 1 201843982 201843982 G A IPO9 Silent p.E952E 0.15 TCGA-FR-A7U9-06 1 201844285 201844285 G A IPO9 Missense_Mutation p.D982N 0.16 tolerated(0.13) benign(0.303) TCGA-FR-A7U9-06 1 201970574 201970574 C T RNPEP Silent p.A425A 0.18 TCGA-FR-A7U9-06 1 201970575 201970575 C T RNPEP Missense_Mutation p.H426Y 0.16 deleterious(0.02) benign(0.033) TCGA-FR-A7U9-06 1 202864807 202864807 G A KLHL12 Silent p.S326S 0.14 TCGA-FR-A7U9-06 1 203140260 203140260 T G MYBPH Missense_Mutation p.T288P 0.16 deleterious(0) possibly_damaging(0.789) TCGA-FR-A7U9-06 1 205030403 205030403 G A CNTN2 Silent p.V276V 0.18 TCGA-FR-A7U9-06 1 205897105 205897105 G A SLC26A9 Silent p.I342I 0.14 TCGA-FR-A7U9-06 1 205901829 205901829 C T SLC26A9 Splice_Site p.X126_splice 0.14 TCGA-FR-A7U9-06 1 205901845 205901845 G A SLC26A9 Missense_Mutation p.H121Y 0.19 deleterious(0) probably_damaging(0.974) TCGA-FR-A7U9-06 1 206623757 206623757 C T SRGAP2 Missense_Mutation p.S623L 0.19 tolerated(0.6) benign(0.001) TCGA-FR-A7U9-06 1 206902126 206902126 C T MAPKAPK2 Silent p.I117I 0.21 TCGA-FR-A7U9-06 1 207112591 207112591 G A PIGR Silent p.F87F 0.16 TCGA-FR-A7U9-06 1 207143509 207143509 C T FCAMR 5'UTR 0.15 TCGA-FR-A7U9-06 1 207314509 207314509 C T C4BPA Silent p.S444S 0.15 TCGA-FR-A7U9-06 1 209605475 209605475 G A MIR205HG Intron 0.21 TCGA-FR-A7U9-06 1 20998501 20998501 G A KIF17 Silent p.S884S 0.33 TCGA-FR-A7U9-06 1 211749224 211749224 G A SLC30A1 Silent p.L344L 0.20 TCGA-FR-A7U9-06 1 214816152 214816152 G A CENPF Missense_Mutation p.G1491R 0.11 benign(0.064) TCGA-FR-A7U9-06 1 216073437 216073437 G A USH2A Missense_Mutation p.P2525L 0.14 benign(0.002) TCGA-FR-A7U9-06 1 216420025 216420025 G A USH2A Missense_Mutation p.S904F 0.17 benign(0.033) TCGA-FR-A7U9-06 1 216497652 216497652 C T USH2A Missense_Mutation p.E396K 0.12 benign(0.065) TCGA-FR-A7U9-06 1 21894704 21894704 C T ALPL Silent p.L252L 0.30 TCGA-FR-A7U9-06 1 21903983 21903983 G A ALPL Missense_Mutation p.G473S 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 223178268 223178268 C T DISP1 Missense_Mutation p.H1177Y 0.14 tolerated(0.23) benign(0.206) TCGA-FR-A7U9-06 1 223286173 223286173 G A TLR5 Silent p.P67P 0.20 TCGA-FR-A7U9-06 1 224804859 224804859 G A CNIH3 5'UTR 0.19 TCGA-FR-A7U9-06 1 226827316 226827316 G T ITPKB Missense_Mutation p.T832K 0.12 deleterious(0.02) benign(0.19) TCGA-FR-A7U9-06 1 228363008 228363008 C T IBA57 Missense_Mutation p.P289S 0.21 deleterious(0.02) benign(0.081) TCGA-FR-A7U9-06 1 22846692 22846692 C T ZBTB40 Missense_Mutation p.S991F 0.39 deleterious(0) benign(0.265) TCGA-FR-A7U9-06 1 228487092 228487092 G A OBSCN Missense_Mutation p.G4448E 0.21 probably_damaging(1) TCGA-FR-A7U9-06 1 228495129 228495129 G A OBSCN Silent p.G5078G 0.20 TCGA-FR-A7U9-06 1 228879035 228879035 G A RHOU Missense_Mutation p.E109K 0.16 deleterious(0.04) possibly_damaging(0.486) TCGA-FR-A7U9-06 1 23222932 23222932 G A EPHB2 Missense_Mutation p.E577K 0.29 tolerated(0.39) benign(0.211) TCGA-FR-A7U9-06 1 232539243 232539243 G A SIPA1L2 Missense_Mutation p.P1631S 0.11 tolerated(0.42) benign(0.001) TCGA-FR-A7U9-06 1 232650106 232650106 C T SIPA1L2 Missense_Mutation p.R327Q 0.17 deleterious(0) benign(0.148) TCGA-FR-A7U9-06 1 233397867 233397867 C T PCNXL2 Missense_Mutation p.R135Q 0.16 tolerated(0.31) benign(0.003) TCGA-FR-A7U9-06 1 23519530 23519530 G A HTR1D 3'UTR 0.41 TCGA-FR-A7U9-06 1 236647657 236647657 C T EDARADD 3'Flank 0.25 TCGA-FR-A7U9-06 1 236730020 236730020 G A HEATR1 Missense_Mutation p.L1412F 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 236758919 236758919 A T HEATR1 Silent p.I337I 0.11 TCGA-FR-A7U9-06 1 237777357 237777357 G C RYR2 Missense_Mutation p.E1643D 0.14 probably_damaging(0.996) TCGA-FR-A7U9-06 1 24200925 24200925 G A CNR2 3'UTR 0.13 TCGA-FR-A7U9-06 1 242451819 242451819 C T PLD5 Missense_Mutation p.E114K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 1 24409110 24409110 C T MYOM3 Missense_Mutation p.E689K 0.42 tolerated(0.09) benign(0.102) TCGA-FR-A7U9-06 1 24460831 24460831 G A IL22RA1 Missense_Mutation p.S134L 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 247587877 247587877 A C NLRP3 Silent p.R378R 0.10 TCGA-FR-A7U9-06 1 247615100 247615100 G A OR2B11 Missense_Mutation p.P62L 0.08 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 1 247836259 247836259 G A OR13G1 Missense_Mutation p.L29F 0.14 tolerated(0.18) benign(0.061) TCGA-FR-A7U9-06 1 247902182 247902182 C T OR14K1 Missense_Mutation p.S89F 0.21 tolerated(0.05) benign(0.028) TCGA-FR-A7U9-06 1 247978756 247978756 G A OR14A16 Silent p.F92F 0.12 TCGA-FR-A7U9-06 1 248004698 248004698 G A OR11L1 Silent p.D167D 0.17 TCGA-FR-A7U9-06 1 248343408 248343408 G A OR2M2 Missense_Mutation p.G41R 0.11 deleterious(0) possibly_damaging(0.835) TCGA-FR-A7U9-06 1 248458301 248458301 C T OR2T12 Missense_Mutation p.E194K 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A7U9-06 1 248458389 248458389 G A OR2T12 Silent p.F164F 0.37 TCGA-FR-A7U9-06 1 248487376 248487376 G A OR2M7 Silent p.S165S 0.17 TCGA-FR-A7U9-06 1 248737998 248737998 C T OR2T34 Missense_Mutation p.G21R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 1 26688423 26688423 G A ZNF683 Missense_Mutation p.R412W 0.34 deleterious(0) benign(0.004) TCGA-FR-A7U9-06 1 26688424 26688424 G A ZNF683 Silent p.C411C 0.34 TCGA-FR-A7U9-06 1 27120878 27120878 C T PIGV Missense_Mutation p.S118L 0.46 deleterious(0.01) benign(0.407) TCGA-FR-A7U9-06 1 29365911 29365911 A G EPB41 Missense_Mutation p.K537E 0.28 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 1 31438929 31438929 G A PUM1 Silent p.S662S 0.09 TCGA-FR-A7U9-06 1 32145241 32145241 C T COL16A1 Missense_Mutation p.G922R 0.14 unknown(0) TCGA-FR-A7U9-06 1 32740502 32740502 C T LCK Intron 0.11 TCGA-FR-A7U9-06 1 3328601 3328601 G A PRDM16 Missense_Mutation p.D614N 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 1 33820527 33820527 C T PHC2 Missense_Mutation p.G435E 0.10 tolerated(0.06) probably_damaging(1) TCGA-FR-A7U9-06 1 34038160 34038160 C T CSMD2 Missense_Mutation p.E2572K 0.31 tolerated(0.64) benign(0.348) TCGA-FR-A7U9-06 1 34190276 34190276 C T CSMD2 Missense_Mutation p.D869N 0.12 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 1 3511916 3511916 T A MEGF6 Missense_Mutation p.E121V 0.27 tolerated(0.25) benign(0.027) TCGA-FR-A7U9-06 1 36505543 36505543 C T AGO3 Silent p.I665I 0.31 TCGA-FR-A7U9-06 1 38152114 38152114 G A C1orf109 Missense_Mutation p.L96F 0.09 tolerated(0.13) probably_damaging(0.977) TCGA-FR-A7U9-06 1 38166182 38166182 C T CDCA8 Nonsense_Mutation p.Q138* 0.19 TCGA-FR-A7U9-06 1 39750786 39750786 C T MACF1 Missense_Mutation p.P393L 0.09 possibly_damaging(0.813) TCGA-FR-A7U9-06 1 39776643 39776643 G A MACF1 Missense_Mutation p.D1086N 0.09 benign(0.1) TCGA-FR-A7U9-06 1 39853703 39853703 G A MACF1 Silent p.E3001E 0.11 TCGA-FR-A7U9-06 1 40131815 40131815 C T NT5C1A Missense_Mutation p.E77K 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A7U9-06 1 40131827 40131827 C T NT5C1A Missense_Mutation p.E73K 0.28 tolerated(0.09) benign(0.033) TCGA-FR-A7U9-06 1 41012399 41012399 C T ZNF684 Missense_Mutation p.S135L 0.10 tolerated(0.11) benign(0.006) TCGA-FR-A7U9-06 1 42048798 42048798 G A HIVEP3 Silent p.F557F 0.14 TCGA-FR-A7U9-06 1 42050152 42050152 G A HIVEP3 Missense_Mutation p.S106L 0.30 possibly_damaging(0.536) TCGA-FR-A7U9-06 1 43124106 43124106 C T PPIH 5'UTR 0.13 TCGA-FR-A7U9-06 1 43778101 43778101 G A TIE1 Missense_Mutation p.D586N 0.16 tolerated(0.25) benign(0.015) TCGA-FR-A7U9-06 1 43907410 43907410 C T SZT2 Missense_Mutation p.P2498S 0.12 tolerated(0.29) benign(0.343) TCGA-FR-A7U9-06 1 45475921 45475921 G A HECTD3 Missense_Mutation p.S192L 0.29 tolerated(0.3) benign(0.014) TCGA-FR-A7U9-06 1 46654409 46654409 C T POMGNT1 Silent p.Q743Q 0.21 TCGA-FR-A7U9-06 1 46876082 46876082 C T FAAH Silent p.F396F 0.34 TCGA-FR-A7U9-06 1 47283674 47283674 G A CYP4B1 Silent p.R415R 0.24 TCGA-FR-A7U9-06 1 47325323 47325323 G A CYP4Z2P Intron 0.47 TCGA-FR-A7U9-06 1 47398700 47398700 G A CYP4A11 Silent p.S414S 0.33 TCGA-FR-A7U9-06 1 47515767 47515767 C T CYP4X1 Missense_Mutation p.P484L 0.28 tolerated(0.06) probably_damaging(0.965) TCGA-FR-A7U9-06 1 47564923 47564923 G A CYP4Z1 Missense_Mutation p.R345K 0.31 tolerated(0.17) possibly_damaging(0.694) TCGA-FR-A7U9-06 1 47582358 47582358 G A CYP4Z1 Missense_Mutation p.E435K 0.40 tolerated(0.47) benign(0.029) TCGA-FR-A7U9-06 1 47607275 47607275 G A CYP4A22 Missense_Mutation p.A124T 0.17 tolerated(0.63) benign(0.159) TCGA-FR-A7U9-06 1 54477884 54477884 G A LDLRAD1 Missense_Mutation p.P91L 0.40 tolerated(0.14) probably_damaging(0.957) TCGA-FR-A7U9-06 1 55138781 55138781 C T MROH7 Silent p.T539T 0.10 TCGA-FR-A7U9-06 1 57173145 57173145 C T PRKAA2 Intron 0.14 TCGA-FR-A7U9-06 1 57347158 57347158 G A C8A Missense_Mutation p.D169N 0.34 deleterious(0) probably_damaging(0.951) TCGA-FR-A7U9-06 1 57481048 57481048 G A DAB1 Nonsense_Mutation p.Q318* 0.13 TCGA-FR-A7U9-06 1 60456491 60456491 C T C1orf87 Missense_Mutation p.E499K 0.40 deleterious(0.04) benign(0.201) TCGA-FR-A7U9-06 1 60506745 60506745 G A C1orf87 Missense_Mutation p.S134F 0.21 deleterious(0.04) benign(0.18) TCGA-FR-A7U9-06 1 6194220 6194220 C T CHD5 Missense_Mutation p.D1038N 0.30 deleterious(0.02) benign(0.168) TCGA-FR-A7U9-06 1 6206823 6206823 G A CHD5 Missense_Mutation p.P498S 0.38 tolerated(0.16) benign(0.358) TCGA-FR-A7U9-06 1 62737233 62737233 G A KANK4 Silent p.S643S 0.14 TCGA-FR-A7U9-06 1 6504563 6504563 C T ESPN Missense_Mutation p.S338F 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 1 65143967 65143967 C T CACHD1 Missense_Mutation p.P1022L 0.53 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 1 66062172 66062172 G A LEPR Missense_Mutation p.D249N 0.09 tolerated(0.11) benign(0.175) TCGA-FR-A7U9-06 1 66087102 66087102 C T LEPR Missense_Mutation p.S853F 0.23 tolerated(0.06) benign(0.012) TCGA-FR-A7U9-06 1 66458696 66458696 C A PDE4B Intron 0.30 TCGA-FR-A7U9-06 1 71418650 71418650 C T PTGER3 Missense_Mutation p.M399I 0.18 tolerated_low_confidence(0.41) benign(0) TCGA-FR-A7U9-06 1 74507351 74507351 C T LRRIQ3 Missense_Mutation p.D422N 0.17 tolerated(0.18) possibly_damaging(0.704) TCGA-FR-A7U9-06 1 75037082 75037082 C T C1orf173 Missense_Mutation p.E1438K 0.11 tolerated(0.14) benign(0.242) TCGA-FR-A7U9-06 1 75038770 75038770 G A C1orf173 Missense_Mutation p.A875V 0.31 tolerated(0.09) benign(0.203) TCGA-FR-A7U9-06 1 78546436 78546436 C T GIPC2 Silent p.F106F 0.09 TCGA-FR-A7U9-06 1 7887577 7887577 C A PER3 Missense_Mutation p.P855H 0.27 tolerated(0.08) probably_damaging(0.953) TCGA-FR-A7U9-06 1 8073289 8073289 G A ERRFI1 Missense_Mutation p.S457F 0.33 deleterious_low_confidence(0) benign(0.347) TCGA-FR-A7U9-06 1 809612 809612 G A FAM41C 5'Flank 0.23 TCGA-FR-A7U9-06 1 82417715 82417715 G A LPHN2 Silent p.G557G 0.16 TCGA-FR-A7U9-06 1 82434963 82434963 T A LPHN2 Missense_Mutation p.F858L 0.28 tolerated(0.13) probably_damaging(0.995) TCGA-FR-A7U9-06 1 90400143 90400143 C T LRRC8D Missense_Mutation p.P506S 0.35 tolerated(0.21) benign(0.002) TCGA-FR-A7U9-06 1 9078386 9078386 T C SLC2A7 Missense_Mutation p.K162R 0.31 tolerated(0.11) benign(0.181) TCGA-FR-A7U9-06 1 91740308 91740308 G A HFM1 Missense_Mutation p.P1216L 0.26 deleterious(0.01) benign(0.071) TCGA-FR-A7U9-06 1 91788663 91788663 G A HFM1 Missense_Mutation p.R841W 0.17 deleterious(0.05) benign(0.12) TCGA-FR-A7U9-06 1 91850766 91850766 G A HFM1 Silent p.S260S 0.11 TCGA-FR-A7U9-06 1 92445210 92445210 G A BRDT Missense_Mutation p.E395K 0.35 tolerated(1) benign(0.003) TCGA-FR-A7U9-06 1 92528837 92528837 A T EPHX4 Missense_Mutation p.K361N 0.15 deleterious(0.04) benign(0.001) TCGA-FR-A7U9-06 1 93602342 93602342 G A MTF2 Missense_Mutation p.E514K 0.26 tolerated(0.42) benign(0.146) TCGA-FR-A7U9-06 1 94546033 94546033 C G ABCA4 Splice_Site p.X367_splice 0.16 TCGA-FR-A7U9-06 1 94586549 94586549 C T ABCA4 Missense_Mutation p.R18Q 0.15 deleterious(0.01) possibly_damaging(0.777) TCGA-FR-A7U9-06 1 9782393 9782393 A G PIK3CD Missense_Mutation p.I776V 0.45 tolerated(0.25) benign(0.015) TCGA-FR-A7U9-06 1 99358522 99358522 A T LPPR5 3'UTR 0.33 TCGA-FR-A7U9-06 20 10644616 10644616 G A JAG1 Missense_Mutation p.T145I 0.26 deleterious(0) benign(0.432) TCGA-FR-A7U9-06 20 1290985 1290985 C T SDCBP2 3'UTR 0.16 TCGA-FR-A7U9-06 20 17639601 17639601 G A RRBP1 Intron 0.21 TCGA-FR-A7U9-06 20 17933284 17933284 G A SNX5 Missense_Mutation p.P154S 0.17 tolerated(0.05) possibly_damaging(0.784) TCGA-FR-A7U9-06 20 18523754 18523754 C T SEC23B Nonsense_Mutation p.R535* 0.25 TCGA-FR-A7U9-06 20 18794691 18794691 G A SCP2D1 Missense_Mutation p.G78R 0.21 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 20 23065922 23065922 C T CD93 Missense_Mutation p.R303Q 0.29 deleterious(0.04) probably_damaging(0.976) TCGA-FR-A7U9-06 20 2321246 2321246 C T TGM3 3'UTR 0.26 TCGA-FR-A7U9-06 20 24523895 24523895 G A SYNDIG1 Silent p.G54G 0.32 TCGA-FR-A7U9-06 20 24949569 24949569 A T APMAP Missense_Mutation p.F334I 0.11 tolerated(0.08) benign(0.032) TCGA-FR-A7U9-06 20 2582895 2582895 G A TMC2 Missense_Mutation p.R454Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 20 29632658 29632658 A C FRG1B Missense_Mutation p.E158A 0.03 deleterious(0.05) possibly_damaging(0.792) TCGA-FR-A7U9-06 20 30433272 30433272 G A FOXS1 Missense_Mutation p.A25V 0.21 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 20 30729442 30729442 G A TM9SF4 Silent p.R124R 0.31 TCGA-FR-A7U9-06 20 30753144 30753144 C T TM9SF4 Missense_Mutation p.T609M 0.16 tolerated(0.95) probably_damaging(0.983) TCGA-FR-A7U9-06 20 31583499 31583499 C T SUN5 Missense_Mutation p.E154K 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A7U9-06 20 33225772 33225772 G A PIGU Silent p.L112L 0.18 TCGA-FR-A7U9-06 20 33337984 33337984 G A NCOA6 Missense_Mutation p.P672S 0.25 possibly_damaging(0.889) TCGA-FR-A7U9-06 20 33598014 33598014 A G TRPC4AP Missense_Mutation p.V496A 0.13 tolerated(0.05) possibly_damaging(0.604) TCGA-FR-A7U9-06 20 34322905 34322905 G A RBM39 Intron 0.28 TCGA-FR-A7U9-06 20 34817395 34817395 G A EPB41L1 3'UTR 0.23 TCGA-FR-A7U9-06 20 3577054 3577054 C T ATRN Silent p.N1149N 0.14 TCGA-FR-A7U9-06 20 3649480 3649480 A T ADAM33 3'UTR 0.16 TCGA-FR-A7U9-06 20 3652891 3652891 G A ADAM33 Missense_Mutation p.P496L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 20 36841790 36841790 G A KIAA1755 Missense_Mutation p.S1086F 0.46 tolerated(0.08) benign(0.03) TCGA-FR-A7U9-06 20 39985815 39985815 G T LPIN3 Missense_Mutation p.G647C 0.26 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 20 39991573 39991573 C T EMILIN3 Silent p.R212R 0.22 TCGA-FR-A7U9-06 20 39992469 39992469 A G EMILIN3 Missense_Mutation p.V108A 0.19 deleterious(0) possibly_damaging(0.676) TCGA-FR-A7U9-06 20 40033526 40033526 G A CHD6 Missense_Mutation p.P2619S 0.33 tolerated(0.3) probably_damaging(0.999) TCGA-FR-A7U9-06 20 40709572 40709572 C T PTPRT Missense_Mutation p.E1425K 0.22 deleterious(0.01) benign(0.423) TCGA-FR-A7U9-06 20 40739028 40739028 G A PTPRT Missense_Mutation p.R1067C 0.14 deleterious(0) probably_damaging(0.926) TCGA-FR-A7U9-06 20 41100981 41100981 G A PTPRT Missense_Mutation p.R459W 0.16 tolerated(0.12) benign(0.001) TCGA-FR-A7U9-06 20 44538664 44538664 G A PLTP Silent p.F82F 0.27 TCGA-FR-A7U9-06 20 44596621 44596621 C T ZNF335 Missense_Mutation p.S189N 0.20 deleterious(0.02) benign(0.17) TCGA-FR-A7U9-06 20 45878031 45878031 C T ZMYND8 Missense_Mutation p.G592S 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A7U9-06 20 4766974 4766974 C T RASSF2 Missense_Mutation p.V272M 0.18 deleterious(0) possibly_damaging(0.632) TCGA-FR-A7U9-06 20 48600638 48600638 C T SNAI1 Silent p.S120S 0.23 TCGA-FR-A7U9-06 20 49510555 49510555 G A ADNP Silent p.S232S 0.24 TCGA-FR-A7U9-06 20 51871558 51871558 G A TSHZ2 Missense_Mutation p.E521K 0.14 deleterious(0) probably_damaging(0.993) TCGA-FR-A7U9-06 20 51872404 51872404 C T TSHZ2 Missense_Mutation p.P803S 0.23 tolerated(0.2) probably_damaging(0.998) TCGA-FR-A7U9-06 20 52645014 52645014 C T BCAS1 Missense_Mutation p.E214K 0.22 deleterious(0.02) possibly_damaging(0.574) TCGA-FR-A7U9-06 20 55027324 55027324 G A CASS4 Silent p.K364K 0.15 TCGA-FR-A7U9-06 20 55904899 55904899 G A SPO11 5'UTR 0.25 TCGA-FR-A7U9-06 20 56139254 56139254 G A PCK1 Missense_Mutation p.G331S 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-FR-A7U9-06 20 57768579 57768579 A G ZNF831 Silent p.Q835Q 0.20 TCGA-FR-A7U9-06 20 5903820 5903820 G A CHGB Missense_Mutation p.E344K 0.18 deleterious(0.01) benign(0.403) TCGA-FR-A7U9-06 20 60909284 60909284 C T LAMA5 Silent p.E899E 0.30 TCGA-FR-A7U9-06 20 60988555 60988555 G A RBBP8NL Missense_Mutation p.P526L 0.33 tolerated(0.13) benign(0.007) TCGA-FR-A7U9-06 20 61468615 61468615 G A COL9A3 Missense_Mutation p.R595K 0.20 tolerated(1) probably_damaging(0.992) TCGA-FR-A7U9-06 20 61526198 61526198 G A DIDO1 Silent p.P800P 0.23 TCGA-FR-A7U9-06 20 62127305 62127305 G A EEF1A2 Silent p.S76S 0.20 TCGA-FR-A7U9-06 20 62737879 62737879 G A NPBWR2 Silent p.I102I 0.24 TCGA-FR-A7U9-06 20 744546 744546 G A SLC52A3 Silent p.F223F 0.32 TCGA-FR-A7U9-06 20 861847 861847 G A ANGPT4 Silent p.T306T 0.17 TCGA-FR-A7U9-06 20 8705300 8705300 C T PLCB1 Intron 0.12 TCGA-FR-A7U9-06 20 8745961 8745961 G A PLCB1 Silent p.R962R 0.21 TCGA-FR-A7U9-06 20 9288452 9288452 G A PLCB4 5'UTR 0.23 TCGA-FR-A7U9-06 20 9546922 9546922 G A PAK7 Missense_Mutation p.S367F 0.15 deleterious(0.04) possibly_damaging(0.548) TCGA-FR-A7U9-06 21 11021178 11021178 C T BAGE2 RNA 0.03 TCGA-FR-A7U9-06 21 11039247 11039247 C T BAGE2 RNA 0.03 TCGA-FR-A7U9-06 21 11049582 11049582 C T BAGE2 RNA 0.04 TCGA-FR-A7U9-06 21 15558363 15558363 G A LIPI Missense_Mutation p.H175Y 0.18 tolerated(0.39) probably_damaging(0.986) TCGA-FR-A7U9-06 21 17246732 17246732 T A USP25 Missense_Mutation p.S896T 0.19 deleterious(0) possibly_damaging(0.728) TCGA-FR-A7U9-06 21 19629015 19629015 C T CHODL Missense_Mutation p.P90L 0.11 tolerated_low_confidence(0.09) benign(0.438) TCGA-FR-A7U9-06 21 19629063 19629063 A T CHODL Missense_Mutation p.N106I 0.17 tolerated(0.17) benign(0.069) TCGA-FR-A7U9-06 21 19642441 19642441 C T TMPRSS15 Missense_Mutation p.G969R 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 21 30302760 30302760 G A LTN1 3'UTR 0.20 TCGA-FR-A7U9-06 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.24 TCGA-FR-A7U9-06 21 33371482 33371482 C T HUNK Silent p.V710V 0.15 TCGA-FR-A7U9-06 21 35183443 35183443 C T ITSN1 Silent p.A828A 0.20 TCGA-FR-A7U9-06 21 36079626 36079626 C T CLIC6 Missense_Mutation p.L475F 0.26 deleterious(0) probably_damaging(0.979) TCGA-FR-A7U9-06 21 38269337 38269337 G A HLCS Missense_Mutation p.S425F 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A7U9-06 21 41719791 41719791 C T DSCAM Missense_Mutation p.G339E 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 21 42749778 42749778 C T MX2 Silent p.I104I 0.20 TCGA-FR-A7U9-06 21 43979116 43979116 C T SLC37A1 Missense_Mutation p.H300Y 0.17 tolerated(0.39) benign(0.005) TCGA-FR-A7U9-06 21 45970863 45970863 G A KRTAP10-2 Missense_Mutation p.S160F 0.17 deleterious(0.05) unknown(0) TCGA-FR-A7U9-06 21 46596251 46596251 C T ADARB1 Missense_Mutation p.P212L 0.11 tolerated(0.74) probably_damaging(0.997) TCGA-FR-A7U9-06 21 46900040 46900040 C T COL18A1 Silent p.P636P 0.40 TCGA-FR-A7U9-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.23 deleterious(0.01) possibly_damaging(0.461) TCGA-FR-A7U9-06 22 17072618 17072618 C T CCT8L2 Missense_Mutation p.D275N 0.18 deleterious(0.02) benign(0.002) TCGA-FR-A7U9-06 22 17446108 17446108 A T GAB4 Missense_Mutation p.S447T 0.18 tolerated(0.11) benign(0.036) TCGA-FR-A7U9-06 22 17488853 17488853 G A GAB4 Missense_Mutation p.P51L 0.22 deleterious(0) possibly_damaging(0.908) TCGA-FR-A7U9-06 22 21340160 21340160 C T LZTR1 Silent p.F98F 0.14 TCGA-FR-A7U9-06 22 21965181 21965181 C T UBE2L3 Silent p.I111I 0.24 TCGA-FR-A7U9-06 22 23165702 23165702 G A IGLV2-8 Silent p.T91T 0.24 TCGA-FR-A7U9-06 22 24898403 24898403 C T UPB1 Intron 0.25 TCGA-FR-A7U9-06 22 28196165 28196165 G A MN1 Missense_Mutation p.P123S 0.38 benign(0.303) TCGA-FR-A7U9-06 22 28196166 28196166 G A MN1 Silent p.D122D 0.38 TCGA-FR-A7U9-06 22 29904421 29904421 G A THOC5 3'UTR 0.14 TCGA-FR-A7U9-06 22 29957621 29957621 G A NIPSNAP1 Silent p.F151F 0.19 TCGA-FR-A7U9-06 22 30125590 30125590 G A CABP7 3'UTR 0.12 TCGA-FR-A7U9-06 22 31850232 31850232 G A EIF4ENIF1 Silent p.T470T 0.27 TCGA-FR-A7U9-06 22 36537903 36537903 G A APOL3 Missense_Mutation p.T185I 0.31 deleterious(0.01) possibly_damaging(0.76) TCGA-FR-A7U9-06 22 36537988 36537988 G A APOL3 Missense_Mutation p.P157S 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A7U9-06 22 36916708 36916708 G A EIF3D Missense_Mutation p.R165C 0.18 deleterious(0) probably_damaging(0.973) TCGA-FR-A7U9-06 22 37319400 37319400 G A CSF2RB Missense_Mutation p.R64Q 0.44 tolerated(0.27) benign(0.017) TCGA-FR-A7U9-06 22 38026929 38026929 C T GGA1 Missense_Mutation p.P451S 0.20 tolerated(0.25) possibly_damaging(0.493) TCGA-FR-A7U9-06 22 41190535 41190535 G A SLC25A17 Silent p.I55I 0.19 TCGA-FR-A7U9-06 22 41265034 41265034 C T XPNPEP3 Silent p.S32S 0.23 TCGA-FR-A7U9-06 22 44031069 44031069 C T EFCAB6 Missense_Mutation p.D671N 0.20 tolerated(0.12) benign(0.037) TCGA-FR-A7U9-06 22 44276696 44276696 G A PNPLA5 Silent p.L423L 0.40 TCGA-FR-A7U9-06 22 44333031 44333031 C T PNPLA3 Silent p.S286S 0.25 TCGA-FR-A7U9-06 22 45309734 45309734 C T PHF21B Missense_Mutation p.E267K 0.18 deleterious(0.04) possibly_damaging(0.614) TCGA-FR-A7U9-06 22 46655879 46655879 C T PKDREJ Nonsense_Mutation p.W1114* 0.20 TCGA-FR-A7U9-06 22 50599207 50599207 C T MOV10L1 Missense_Mutation p.P1139S 0.22 tolerated(0.19) benign(0.264) TCGA-FR-A7U9-06 22 50647058 50647058 C T SELO Silent p.L284L 0.11 TCGA-FR-A7U9-06 22 50899632 50899632 G A SBF1 Nonsense_Mutation p.Q975* 0.20 TCGA-FR-A7U9-06 2 100055493 100055493 C T REV1 Silent p.E261E 0.28 TCGA-FR-A7U9-06 2 102781713 102781713 G A IL1R1 Missense_Mutation p.M145I 0.11 deleterious(0.01) benign(0.057) TCGA-FR-A7U9-06 2 102805538 102805538 G A IL1RL2 Missense_Mutation p.G21R 0.19 tolerated(0.45) benign(0.05) TCGA-FR-A7U9-06 2 103121753 103121753 G A SLC9A4 Missense_Mutation p.E341K 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A7U9-06 2 103121763 103121763 C T SLC9A4 Missense_Mutation p.S344F 0.22 deleterious(0) probably_damaging(0.994) TCGA-FR-A7U9-06 2 103130675 103130675 G A SLC9A4 Silent p.G562G 0.20 TCGA-FR-A7U9-06 2 103321108 103321108 G A SLC9A2 Missense_Mutation p.D651N 0.33 tolerated(0.2) benign(0.293) TCGA-FR-A7U9-06 2 10563163 10563163 C T HPCAL1 Missense_Mutation p.P145S 0.14 deleterious(0) probably_damaging(0.989) TCGA-FR-A7U9-06 2 10563164 10563164 C T HPCAL1 Missense_Mutation p.P145L 0.17 deleterious(0) probably_damaging(0.938) TCGA-FR-A7U9-06 2 108487302 108487302 C T RGPD4 Nonsense_Mutation p.Q948* 0.29 TCGA-FR-A7U9-06 2 108604597 108604597 G A SLC5A7 5'UTR 0.26 TCGA-FR-A7U9-06 2 10912727 10912727 G A ATP6V1C2 Missense_Mutation p.R210Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-FR-A7U9-06 2 111408326 111408326 G A BUB1 Missense_Mutation p.S667L 0.14 tolerated(0.34) benign(0.001) TCGA-FR-A7U9-06 2 111851146 111851146 A T ACOXL Intron 0.24 TCGA-FR-A7U9-06 2 112550126 112550126 G A ANAPC1 Missense_Mutation p.P1509S 0.17 tolerated(0.17) benign(0.034) TCGA-FR-A7U9-06 2 112592371 112592371 G A ANAPC1 Missense_Mutation p.P732S 0.17 tolerated(0.43) benign(0.004) TCGA-FR-A7U9-06 2 113670640 113670640 G A IL37 Nonsense_Mutation p.W17* 0.20 TCGA-FR-A7U9-06 2 113670641 113670641 G A IL37 Missense_Mutation p.E18K 0.19 deleterious(0.02) probably_damaging(0.941) TCGA-FR-A7U9-06 2 113676387 113676387 G A IL37 3'UTR 0.14 TCGA-FR-A7U9-06 2 113783692 113783692 C T IL36B Missense_Mutation p.G127R 0.24 tolerated_low_confidence(0.15) benign(0.024) TCGA-FR-A7U9-06 2 113890264 113890264 G A IL1RN Missense_Mutation p.R120K 0.18 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 2 11741104 11741104 C T GREB1 Missense_Mutation p.P838S 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A7U9-06 2 11777888 11777888 C T GREB1 Missense_Mutation p.A1798V 0.18 deleterious(0) benign(0.169) TCGA-FR-A7U9-06 2 120677790 120677790 T A PTPN4 Missense_Mutation p.F325Y 0.25 tolerated(0.17) probably_damaging(0.996) TCGA-FR-A7U9-06 2 121740418 121740418 G A GLI2 Missense_Mutation p.D549N 0.16 deleterious(0) probably_damaging(0.991) TCGA-FR-A7U9-06 2 132240223 132240223 G A TUBA3D Silent p.A385A 0.19 TCGA-FR-A7U9-06 2 133541183 133541183 C T NCKAP5 Silent p.R1067R 0.25 TCGA-FR-A7U9-06 2 135170440 135170440 T C MGAT5 Silent p.L511L 0.19 TCGA-FR-A7U9-06 2 137917831 137917831 C T THSD7B Missense_Mutation p.P473L 0.31 tolerated(0.18) possibly_damaging(0.851) TCGA-FR-A7U9-06 2 138330013 138330013 G A THSD7B Missense_Mutation p.D1107N 0.19 tolerated(0.19) unknown(0) TCGA-FR-A7U9-06 2 138417269 138417269 C T THSD7B Missense_Mutation p.R1474W 0.21 deleterious(0.02) unknown(0) TCGA-FR-A7U9-06 2 139428478 139428478 C T NXPH2 3'UTR 0.19 TCGA-FR-A7U9-06 2 144966262 144966262 G A GTDC1 Silent p.V29V 0.21 TCGA-FR-A7U9-06 2 148680596 148680596 C T ACVR2A Nonsense_Mutation p.Q378* 0.17 TCGA-FR-A7U9-06 2 1497754 1497754 G A TPO Missense_Mutation p.G650E 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 150432224 150432224 C A MMADHC Splice_Site p.X203_splice 0.11 TCGA-FR-A7U9-06 2 152402883 152402883 G A NEB Silent p.R6814R 0.19 TCGA-FR-A7U9-06 2 155711668 155711668 A T KCNJ3 Missense_Mutation p.K450I 0.21 deleterious_low_confidence(0) benign(0.022) TCGA-FR-A7U9-06 2 160812261 160812261 A G PLA2R1 Missense_Mutation p.L1034P 0.20 tolerated(0.06) probably_damaging(0.932) TCGA-FR-A7U9-06 2 161051899 161051899 C T ITGB6 Missense_Mutation p.E192K 0.17 tolerated(0.2) possibly_damaging(0.902) TCGA-FR-A7U9-06 2 162696339 162696339 G A SLC4A10 Silent p.E106E 0.24 TCGA-FR-A7U9-06 2 162696406 162696406 G A SLC4A10 Missense_Mutation p.G129S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A7U9-06 2 163393518 163393518 A T KCNH7 Missense_Mutation p.I127N 0.24 deleterious(0) possibly_damaging(0.611) TCGA-FR-A7U9-06 2 165578609 165578609 G A COBLL1 Silent p.S324S 0.12 TCGA-FR-A7U9-06 2 165970347 165970347 G A SCN3A Silent p.I1216I 0.17 TCGA-FR-A7U9-06 2 166170543 166170543 G A SCN2A Silent p.L436L 0.19 TCGA-FR-A7U9-06 2 166806242 166806242 G A TTC21B Intron 0.23 TCGA-FR-A7U9-06 2 167055571 167055571 G A SCN9A Missense_Mutation p.R1849C 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 167129037 167129037 C T SCN9A Missense_Mutation p.D1064N 0.21 tolerated(0.05) possibly_damaging(0.881) TCGA-FR-A7U9-06 2 167304125 167304125 C T SCN7A Missense_Mutation p.E462K 0.16 deleterious(0.04) benign(0.002) TCGA-FR-A7U9-06 2 16746944 16746944 A G FAM49A Silent p.A54A 0.20 TCGA-FR-A7U9-06 2 168100929 168100929 C T XIRP2 Silent p.I1009I 0.20 TCGA-FR-A7U9-06 2 168101452 168101452 G A XIRP2 Missense_Mutation p.E1184K 0.18 probably_damaging(0.944) TCGA-FR-A7U9-06 2 168107566 168107566 C T XIRP2 Missense_Mutation p.R3222C 0.24 probably_damaging(1) TCGA-FR-A7U9-06 2 168725817 168725817 G A B3GALT1 Missense_Mutation p.E90K 0.24 deleterious(0.04) benign(0.41) TCGA-FR-A7U9-06 2 170518881 170518881 A G CCDC173 Missense_Mutation p.I243T 0.26 deleterious(0) probably_damaging(0.971) TCGA-FR-A7U9-06 2 171239595 171239595 C T MYO3B Missense_Mutation p.H361Y 0.20 tolerated(0.06) benign(0.005) TCGA-FR-A7U9-06 2 172216948 172216948 G A METTL8 Silent p.V73V 0.08 TCGA-FR-A7U9-06 2 178494209 178494209 G A PDE11A Nonsense_Mutation p.Q910* 0.18 TCGA-FR-A7U9-06 2 179395108 179395108 C T TTN Missense_Mutation p.A35412T 0.23 TCGA-FR-A7U9-06 2 179408973 179408973 C T TTN Missense_Mutation p.E31995K 0.25 TCGA-FR-A7U9-06 2 179429322 179429322 G A TTN Silent p.A27179A 0.27 TCGA-FR-A7U9-06 2 179435632 179435632 C T TTN Missense_Mutation p.R25076K 0.18 TCGA-FR-A7U9-06 2 179440007 179440007 C T TTN Missense_Mutation p.E23618K 0.08 TCGA-FR-A7U9-06 2 179450028 179450028 C T TTN Silent p.G21481G 0.24 TCGA-FR-A7U9-06 2 179452276 179452276 C T TTN Missense_Mutation p.E21254K 0.21 TCGA-FR-A7U9-06 2 179462292 179462292 T A TTN Nonsense_Mutation p.K19173* 0.37 TCGA-FR-A7U9-06 2 179477655 179477655 C T TTN Nonsense_Mutation p.W16598* 0.12 TCGA-FR-A7U9-06 2 179567187 179567187 C T TTN Missense_Mutation p.D10143N 0.16 TCGA-FR-A7U9-06 2 179574393 179574393 C T TTN Silent p.L9551L 0.20 TCGA-FR-A7U9-06 2 179579896 179579896 G A TTN Missense_Mutation p.H8673Y 0.22 TCGA-FR-A7U9-06 2 179583921 179583921 C T TTN Missense_Mutation p.D8066N 0.30 TCGA-FR-A7U9-06 2 179587235 179587235 C T TTN Missense_Mutation p.D7427N 0.13 TCGA-FR-A7U9-06 2 179595779 179595779 G A TTN Silent p.I5871I 0.24 TCGA-FR-A7U9-06 2 179599205 179599205 G A TTN Nonsense_Mutation p.R5116* 0.24 TCGA-FR-A7U9-06 2 179599324 179599324 G A TTN Missense_Mutation p.S5076F 0.20 TCGA-FR-A7U9-06 2 179615163 179615163 T C TTN Intron 0.19 TCGA-FR-A7U9-06 2 179635978 179635978 C A TTN Missense_Mutation p.K2692N 0.16 TCGA-FR-A7U9-06 2 179641392 179641392 C T TTN Silent p.T1733T 0.22 TCGA-FR-A7U9-06 2 179641532 179641532 C T TTN Missense_Mutation p.E1687K 0.24 TCGA-FR-A7U9-06 2 179642107 179642107 G A TTN Intron 0.38 TCGA-FR-A7U9-06 2 179644656 179644656 G A TTN Intron 0.14 TCGA-FR-A7U9-06 2 179720169 179720169 C T CCDC141 Missense_Mutation p.D989N 0.22 deleterious(0) probably_damaging(0.976) TCGA-FR-A7U9-06 2 182396399 182396399 G A ITGA4 Missense_Mutation p.D894N 0.16 tolerated(0.08) probably_damaging(1) TCGA-FR-A7U9-06 2 185800765 185800765 T A ZNF804A Missense_Mutation p.F214L 0.21 deleterious(0) probably_damaging(0.931) TCGA-FR-A7U9-06 2 186671243 186671243 C A FSIP2 Nonsense_Mutation p.S5826* 0.10 TCGA-FR-A7U9-06 2 188243725 188243725 C T CALCRL Missense_Mutation p.G148R 0.19 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 2 188349682 188349682 G A TFPI Missense_Mutation p.P131S 0.12 tolerated(0.19) benign(0.01) TCGA-FR-A7U9-06 2 189868811 189868811 C T COL3A1 Missense_Mutation p.P922L 0.14 probably_damaging(0.981) TCGA-FR-A7U9-06 2 189932788 189932788 G A COL5A2 Missense_Mutation p.P452S 0.18 possibly_damaging(0.733) TCGA-FR-A7U9-06 2 190532531 190532531 T C ASNSD1 Silent p.G502G 0.12 TCGA-FR-A7U9-06 2 192700700 192700700 G A SDPR Silent p.S409S 0.14 TCGA-FR-A7U9-06 2 193056638 193056638 C T TMEFF2 Missense_Mutation p.G84R 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 2 196673483 196673483 C T DNAH7 Missense_Mutation p.D3336N 0.17 tolerated(0.4) benign(0.007) TCGA-FR-A7U9-06 2 196673583 196673583 C T DNAH7 Nonsense_Mutation p.W3302* 0.23 TCGA-FR-A7U9-06 2 196709789 196709789 C T DNAH7 Missense_Mutation p.R2961Q 0.11 tolerated(0.06) possibly_damaging(0.864) TCGA-FR-A7U9-06 2 196726533 196726533 G A DNAH7 Silent p.F2548F 0.18 TCGA-FR-A7U9-06 2 196729430 196729430 G A DNAH7 Nonsense_Mutation p.R2317* 0.19 TCGA-FR-A7U9-06 2 196774849 196774849 C T DNAH7 Missense_Mutation p.E1336K 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 196799425 196799425 C T DNAH7 Missense_Mutation p.E1121K 0.16 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 2 196891494 196891494 C T DNAH7 Silent p.R219R 0.26 TCGA-FR-A7U9-06 2 201507443 201507443 G A AOX1 Silent p.G922G 0.18 TCGA-FR-A7U9-06 2 201515803 201515803 C T AOX1 Missense_Mutation p.S985F 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-FR-A7U9-06 2 201523899 201523899 T G AOX1 Silent p.R1061R 0.19 TCGA-FR-A7U9-06 2 204292000 204292000 T G ABI2 Nonsense_Mutation p.Y451* 0.30 TCGA-FR-A7U9-06 2 207014648 207014648 G A NDUFS1 Missense_Mutation p.A66V 0.25 deleterious(0.03) probably_damaging(0.992) TCGA-FR-A7U9-06 2 207395646 207395646 G A ADAM23 Missense_Mutation p.E183K 0.23 tolerated(0.05) possibly_damaging(0.882) TCGA-FR-A7U9-06 2 208030279 208030279 G A KLF7 Missense_Mutation p.A5V 0.21 deleterious(0.01) benign(0.11) TCGA-FR-A7U9-06 2 209030524 209030524 C T C2orf80 3'UTR 0.26 TCGA-FR-A7U9-06 2 209190106 209190106 A G PIKFYVE Missense_Mutation p.I857M 0.22 tolerated(0.14) benign(0.026) TCGA-FR-A7U9-06 2 21227169 21227169 G A APOB Missense_Mutation p.S4020F 0.19 benign(0) TCGA-FR-A7U9-06 2 21228313 21228313 G A APOB Silent p.P3809P 0.24 TCGA-FR-A7U9-06 2 21231433 21231433 G A APOB Silent p.F2769F 0.21 TCGA-FR-A7U9-06 2 21238114 21238114 A G APOB Missense_Mutation p.F1176S 0.40 probably_damaging(0.994) TCGA-FR-A7U9-06 2 215851408 215851408 C T ABCA12 Missense_Mutation p.D1341N 0.12 tolerated(0.23) benign(0.105) TCGA-FR-A7U9-06 2 217279995 217279995 T C SMARCAL1 Silent p.L190L 0.24 TCGA-FR-A7U9-06 2 218999728 218999728 C T CXCR2 Silent p.L68L 0.20 TCGA-FR-A7U9-06 2 219028978 219028978 G A CXCR1 Silent p.I319I 0.20 TCGA-FR-A7U9-06 2 219247804 219247804 C T SLC11A1 Silent p.I43I 0.15 TCGA-FR-A7U9-06 2 219254639 219254639 A G SLC11A1 Missense_Mutation p.N281S 0.29 tolerated(0.06) possibly_damaging(0.681) TCGA-FR-A7U9-06 2 219294077 219294077 G A VIL1 Missense_Mutation p.G213R 0.30 deleterious(0) probably_damaging(0.987) TCGA-FR-A7U9-06 2 220136063 220136063 C T TUBA4B RNA 0.23 TCGA-FR-A7U9-06 2 220286065 220286065 G A DES Missense_Mutation p.D343N 0.21 deleterious(0) possibly_damaging(0.479) TCGA-FR-A7U9-06 2 220333943 220333943 C T SPEG Missense_Mutation p.S1186F 0.26 probably_damaging(0.945) TCGA-FR-A7U9-06 2 220354612 220354612 C T SPEG Nonsense_Mutation p.R2958* 0.18 TCGA-FR-A7U9-06 2 220432272 220432272 G A OBSL1 Silent p.P520P 0.31 TCGA-FR-A7U9-06 2 226447062 226447062 C T NYAP2 Missense_Mutation p.S310L 0.08 tolerated(0.11) benign(0.042) TCGA-FR-A7U9-06 2 227942663 227942663 C T COL4A4 Missense_Mutation p.G645E 0.19 probably_damaging(0.993) TCGA-FR-A7U9-06 2 228147188 228147188 G A COL4A3 Missense_Mutation p.E866K 0.13 unknown(0) TCGA-FR-A7U9-06 2 228157934 228157934 G A COL4A3 Missense_Mutation p.G1080R 0.15 unknown(0) TCGA-FR-A7U9-06 2 228882320 228882320 C T SPHKAP Missense_Mutation p.E1084K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 2 233243751 233243751 G A ALPP Silent p.Q49Q 0.23 TCGA-FR-A7U9-06 2 233323043 233323043 C T ALPI Silent p.L370L 0.11 TCGA-FR-A7U9-06 2 234591087 234591087 C T UGT1A7 Silent p.F168F 0.19 TCGA-FR-A7U9-06 2 234652078 234652078 G A UGT1A10 Intron 0.27 TCGA-FR-A7U9-06 2 234652429 234652429 C T UGT1A10 Intron 0.17 TCGA-FR-A7U9-06 2 235950325 235950325 C T SH3BP4 Silent p.G304G 0.15 TCGA-FR-A7U9-06 2 238277552 238277552 C T COL6A3 Silent p.K1518K 0.26 TCGA-FR-A7U9-06 2 238280390 238280390 G A COL6A3 Missense_Mutation p.R1424C 0.20 possibly_damaging(0.786) TCGA-FR-A7U9-06 2 238672404 238672404 C T LRRFIP1 Missense_Mutation p.T683I 0.21 tolerated(0.06) benign(0.015) TCGA-FR-A7U9-06 2 242437076 242437076 C T STK25 Silent p.P353P 0.19 TCGA-FR-A7U9-06 2 242438450 242438450 G A STK25 Missense_Mutation p.P242L 0.24 tolerated(0.08) benign(0.029) TCGA-FR-A7U9-06 2 24253987 24253987 G A C2orf44 Missense_Mutation p.P661L 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 25498393 25498393 G A DNMT3A Silent p.T156T 0.22 TCGA-FR-A7U9-06 2 25498394 25498394 G A DNMT3A Missense_Mutation p.T156I 0.22 tolerated(0.17) benign(0.025) TCGA-FR-A7U9-06 2 25978941 25978941 T G ASXL2 Missense_Mutation p.N328H 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 2 26535958 26535958 C T GPR113 Silent p.E502E 0.29 TCGA-FR-A7U9-06 2 26609386 26609386 C T EPT1 Silent p.I359I 0.11 TCGA-FR-A7U9-06 2 26698907 26698907 C T OTOF Splice_Site p.X956_splice 0.24 TCGA-FR-A7U9-06 2 27360240 27360240 C T C2orf53 Missense_Mutation p.E320K 0.19 tolerated(0.07) benign(0.066) TCGA-FR-A7U9-06 2 27715137 27715137 A T FNDC4 3'UTR 0.50 TCGA-FR-A7U9-06 2 28814603 28814603 C T PLB1 Missense_Mutation p.P722S 0.16 deleterious(0.05) possibly_damaging(0.555) TCGA-FR-A7U9-06 2 29245104 29245104 G A FAM179A Missense_Mutation p.E481K 0.25 deleterious(0.03) possibly_damaging(0.873) TCGA-FR-A7U9-06 2 29259505 29259505 G A FAM179A Silent p.E839E 0.14 TCGA-FR-A7U9-06 2 29754928 29754928 G A ALK Missense_Mutation p.P336L 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 2 31483602 31483602 C T EHD3 Silent p.I243I 0.23 TCGA-FR-A7U9-06 2 31598278 31598278 G A XDH Missense_Mutation p.L524F 0.19 tolerated(0.25) possibly_damaging(0.594) TCGA-FR-A7U9-06 2 33042557 33042557 C T TTC27 Missense_Mutation p.S781F 0.20 tolerated(0.11) benign(0.021) TCGA-FR-A7U9-06 2 3750037 3750037 C T ALLC Missense_Mutation p.P354S 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 44073430 44073430 T C ABCG8 Missense_Mutation p.L101P 0.29 deleterious(0) probably_damaging(0.98) TCGA-FR-A7U9-06 2 44531288 44531288 G A SLC3A1 Missense_Mutation p.M381I 0.21 deleterious(0.05) benign(0.305) TCGA-FR-A7U9-06 2 48915483 48915483 G A LHCGR Silent p.L485L 0.24 TCGA-FR-A7U9-06 2 50765525 50765525 G A NRXN1 Missense_Mutation p.P710L 0.20 deleterious(0) probably_damaging(0.961) TCGA-FR-A7U9-06 2 50765566 50765566 G A NRXN1 Silent p.I696I 0.20 TCGA-FR-A7U9-06 2 50779996 50779996 C T NRXN1 Nonsense_Mutation p.W536* 0.13 TCGA-FR-A7U9-06 2 50779997 50779997 C T NRXN1 Nonsense_Mutation p.W536* 0.12 TCGA-FR-A7U9-06 2 62053576 62053576 G A FAM161A 3'UTR 0.18 TCGA-FR-A7U9-06 2 69043416 69043416 C T ARHGAP25 Intron 0.22 TCGA-FR-A7U9-06 2 71043415 71043415 C T CLEC4F Missense_Mutation p.M366I 0.24 deleterious(0.01) benign(0.008) TCGA-FR-A7U9-06 2 71043519 71043519 G A CLEC4F Missense_Mutation p.H332Y 0.21 deleterious(0.02) possibly_damaging(0.759) TCGA-FR-A7U9-06 2 71576129 71576129 A C ZNF638 Missense_Mutation p.Q15H 0.22 deleterious(0) possibly_damaging(0.907) TCGA-FR-A7U9-06 2 71795441 71795441 G A DYSF Missense_Mutation p.G946E 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-FR-A7U9-06 2 73959303 73959303 G A TPRKB Missense_Mutation p.S84F 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 2 74454952 74454952 G A SLC4A5 Silent p.S967S 0.19 TCGA-FR-A7U9-06 2 74750528 74750528 C T DQX1 Missense_Mutation p.R318Q 0.25 deleterious(0.02) benign(0.137) TCGA-FR-A7U9-06 2 77745843 77745843 G A LRRTM4 Silent p.I384I 0.30 TCGA-FR-A7U9-06 2 79254240 79254240 G A REG3G Silent p.V92V 0.23 TCGA-FR-A7U9-06 2 79349171 79349171 G C REG1A Missense_Mutation p.G81R 0.10 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 2 79385516 79385516 G A REG3A Missense_Mutation p.S90F 0.16 deleterious(0) probably_damaging(0.99) TCGA-FR-A7U9-06 2 84518182 84518182 C T FUNDC2P2 RNA 0.20 TCGA-FR-A7U9-06 2 85097496 85097496 G A TRABD2A Silent p.S174S 0.23 TCGA-FR-A7U9-06 2 85589363 85589363 C T ELMOD3 Silent p.L37L 0.17 TCGA-FR-A7U9-06 2 85785668 85785668 G A GGCX Missense_Mutation p.P145L 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-FR-A7U9-06 2 86270117 86270117 G T POLR1A Missense_Mutation p.R1113S 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-FR-A7U9-06 2 86270118 86270118 G T POLR1A Silent p.G1112G 0.14 TCGA-FR-A7U9-06 2 86491124 86491124 G A REEP1 Missense_Mutation p.T56I 0.20 tolerated(0.08) benign(0.14) TCGA-FR-A7U9-06 2 86831538 86831538 G A RNF103 Missense_Mutation p.P496S 0.25 tolerated(0.11) probably_damaging(0.999) TCGA-FR-A7U9-06 2 88828956 88828956 G A TEX37 Silent p.L169L 0.18 TCGA-FR-A7U9-06 2 88829000 88829000 G A TEX37 3'UTR 0.18 TCGA-FR-A7U9-06 2 89084112 89084112 C T ANKRD36BP2 Intron 0.14 TCGA-FR-A7U9-06 2 89278477 89278477 G A IGKV3-7 Silent p.F9F 0.23 TCGA-FR-A7U9-06 2 90108796 90108796 G A IGKV6D-41 Missense_Mutation p.D21N 0.31 tolerated(0.06) benign(0.19) TCGA-FR-A7U9-06 2 9498958 9498982 GGTTCATTATTCCAGGATGCAGTCC - ASAP2 Frame_Shift_Del p.V468* 0.16 TCGA-FR-A7U9-06 2 95481636 95481636 T G ANKRD20A8P RNA 0.21 TCGA-FR-A7U9-06 2 96259940 96259940 G A TRIM43 Missense_Mutation p.E57K 0.18 tolerated(0.27) benign(0.086) TCGA-FR-A7U9-06 2 97215110 97215110 A C ARID5A Missense_Mutation p.E58A 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A7U9-06 2 97365790 97365790 G C FER1L5 RNA 0.18 TCGA-FR-A7U9-06 2 98834348 98834348 G A VWA3B Missense_Mutation p.E626K 0.24 tolerated(1) benign(0.002) TCGA-FR-A7U9-06 2 98846616 98846616 G A VWA3B Missense_Mutation p.G752R 0.17 tolerated(0.55) benign(0.027) TCGA-FR-A7U9-06 2 98846646 98846646 C T VWA3B Nonsense_Mutation p.Q762* 0.18 TCGA-FR-A7U9-06 2 99634796 99634796 C T TSGA10 Missense_Mutation p.E647K 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 2 99985852 99985852 C T EIF5B Intron 0.23 TCGA-FR-A7U9-06 3 102153976 102153976 C T ZPLD1 Silent p.S6S 0.38 TCGA-FR-A7U9-06 3 10384638 10384638 C T ATP2B2 Silent p.L905L 0.14 TCGA-FR-A7U9-06 3 105495292 105495292 G A CBLB Missense_Mutation p.R172C 0.10 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 3 108158716 108158716 G A MYH15 Silent p.I1001I 0.15 TCGA-FR-A7U9-06 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 3 108572757 108572757 C T TRAT1 3'UTR 0.27 TCGA-FR-A7U9-06 3 108672412 108672412 C T GUCA1C Silent p.T66T 0.30 TCGA-FR-A7U9-06 3 108682355 108682355 G A MORC1 Missense_Mutation p.S902F 0.12 tolerated(0.25) benign(0.007) TCGA-FR-A7U9-06 3 108813840 108813840 C T MORC1 Missense_Mutation p.E167K 0.19 deleterious(0) probably_damaging(0.938) TCGA-FR-A7U9-06 3 109047876 109047876 G A DPPA4 Missense_Mutation p.H247Y 0.20 deleterious(0.01) possibly_damaging(0.876) TCGA-FR-A7U9-06 3 11059584 11059584 C T SLC6A1 Silent p.F98F 0.10 TCGA-FR-A7U9-06 3 11078553 11078553 C T SLC6A1 Silent p.I567I 0.12 TCGA-FR-A7U9-06 3 111312408 111312408 G A ZBED2 Missense_Mutation p.P214L 0.26 tolerated_low_confidence(0.05) probably_damaging(0.922) TCGA-FR-A7U9-06 3 112218144 112218144 G T BTLA Missense_Mutation p.P21Q 0.24 tolerated(0.47) possibly_damaging(0.671) TCGA-FR-A7U9-06 3 112546224 112546224 G A CD200R1L Silent p.L140L 0.25 TCGA-FR-A7U9-06 3 112642616 112642616 C T CD200R1 Missense_Mutation p.E319K 0.25 deleterious(0) probably_damaging(0.953) TCGA-FR-A7U9-06 3 11300881 11300881 G A HRH1 Missense_Mutation p.R53Q 0.11 deleterious(0.02) benign(0.382) TCGA-FR-A7U9-06 3 113122764 113122764 G A WDR52 Missense_Mutation p.P369S 0.23 tolerated(0.24) benign(0.005) TCGA-FR-A7U9-06 3 113330986 113330986 T C SIDT1 Silent p.V637V 0.17 TCGA-FR-A7U9-06 3 118865818 118865818 G A C3orf30 Missense_Mutation p.R261K 0.14 deleterious(0.02) possibly_damaging(0.87) TCGA-FR-A7U9-06 3 119087293 119087293 C T ARHGAP31 Missense_Mutation p.S93L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 3 120673813 120673813 G A STXBP5L Silent p.Q72Q 0.21 TCGA-FR-A7U9-06 3 120973808 120973808 G A STXBP5L Missense_Mutation p.G503E 0.26 tolerated(0.54) benign(0.236) TCGA-FR-A7U9-06 3 121126257 121126257 G A STXBP5L Missense_Mutation p.E943K 0.18 tolerated(0.14) benign(0.217) TCGA-FR-A7U9-06 3 121303897 121303897 G A ARGFX Silent p.P118P 0.29 TCGA-FR-A7U9-06 3 121353154 121353154 C T HCLS1 Missense_Mutation p.R268Q 0.11 tolerated(0.85) benign(0.238) TCGA-FR-A7U9-06 3 121634084 121634084 G A SLC15A2 Missense_Mutation p.R180Q 0.23 deleterious(0) possibly_damaging(0.782) TCGA-FR-A7U9-06 3 121659289 121659289 G A SLC15A2 Missense_Mutation p.G656E 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 3 121726103 121726103 C T ILDR1 Intron 0.36 TCGA-FR-A7U9-06 3 121973151 121973151 C T CASR Missense_Mutation p.P39S 0.18 tolerated(0.33) probably_damaging(0.962) TCGA-FR-A7U9-06 3 122277191 122277191 G A PARP9 Missense_Mutation p.P47S 0.25 tolerated(0.38) possibly_damaging(0.709) TCGA-FR-A7U9-06 3 123332970 123332970 C T MYLK Silent p.G1909G 0.13 TCGA-FR-A7U9-06 3 123452994 123452994 C T MYLK Silent p.S283S 0.43 TCGA-FR-A7U9-06 3 124837628 124837628 G A SLC12A8 Silent p.F299F 0.16 TCGA-FR-A7U9-06 3 125725821 125725821 G A SLC41A3 Intron 0.21 TCGA-FR-A7U9-06 3 126226813 126226813 C T UROC1 Silent p.G179G 0.18 TCGA-FR-A7U9-06 3 12641219 12641219 A G RAF1 Missense_Mutation p.F360S 0.24 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 3 126710404 126710404 C T PLXNA1 Missense_Mutation p.R458C 0.25 deleterious(0) possibly_damaging(0.713) TCGA-FR-A7U9-06 3 126916088 126916088 C T C3orf56 Missense_Mutation p.P187L 0.25 tolerated(0.1) possibly_damaging(0.851) TCGA-FR-A7U9-06 3 133337220 133337220 G A TOPBP1 Silent p.I1143I 0.16 TCGA-FR-A7U9-06 3 133661557 133661557 G A SLCO2A1 Missense_Mutation p.S506L 0.29 deleterious(0.02) possibly_damaging(0.57) TCGA-FR-A7U9-06 3 133667539 133667539 G A SLCO2A1 Missense_Mutation p.P316S 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 3 13401873 13401873 G A NUP210 Missense_Mutation p.A684V 0.33 tolerated(0.48) benign(0.01) TCGA-FR-A7U9-06 3 134960001 134960001 C T EPHB1 Silent p.I786I 0.08 TCGA-FR-A7U9-06 3 137729278 137729278 G A CLDN18 Missense_Mutation p.G71R 0.21 tolerated(0.14) probably_damaging(0.999) TCGA-FR-A7U9-06 3 140407193 140407193 G A TRIM42 Missense_Mutation p.G557R 0.25 tolerated(0.64) benign(0.029) TCGA-FR-A7U9-06 3 1415701 1415701 G A CNTN6 Missense_Mutation p.S680N 0.16 tolerated(0.36) benign(0.047) TCGA-FR-A7U9-06 3 142567065 142567065 C T PCOLCE2 Missense_Mutation p.E148K 0.18 tolerated(0.83) benign(0.075) TCGA-FR-A7U9-06 3 145913062 145913062 G A PLSCR4 Missense_Mutation p.S265F 0.12 deleterious(0) probably_damaging(0.975) TCGA-FR-A7U9-06 3 14695993 14695993 C T CCDC174 Silent p.L35L 0.18 TCGA-FR-A7U9-06 3 148459627 148459627 G A AGTR1 Missense_Mutation p.G269S 0.12 tolerated(0.66) benign(0.033) TCGA-FR-A7U9-06 3 151082854 151082854 G A MED12L Missense_Mutation p.M980I 0.11 tolerated(0.92) benign(0.006) TCGA-FR-A7U9-06 3 151150567 151150567 C T MED12L Missense_Mutation p.P2138L 0.15 tolerated_low_confidence(0.07) benign(0.027) TCGA-FR-A7U9-06 3 153840244 153840244 C T ARHGEF26 Missense_Mutation p.P155S 0.12 tolerated_low_confidence(0.47) benign(0.003) TCGA-FR-A7U9-06 3 153840245 153840245 C T ARHGEF26 Missense_Mutation p.P155L 0.12 deleterious_low_confidence(0.03) benign(0.054) TCGA-FR-A7U9-06 3 160102291 160102291 A T IFT80 Intron 0.47 TCGA-FR-A7U9-06 3 161214747 161214747 C T OTOL1 Missense_Mutation p.P51L 0.18 tolerated(0.23) unknown(0) TCGA-FR-A7U9-06 3 167196743 167196743 C T WDR49 Missense_Mutation p.E673K 0.09 deleterious(0.05) benign(0.152) TCGA-FR-A7U9-06 3 167250724 167250724 C T WDR49 Missense_Mutation p.E314K 0.32 deleterious(0) possibly_damaging(0.776) TCGA-FR-A7U9-06 3 168833264 168833264 C T MECOM Missense_Mutation p.G676E 0.46 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 3 169540280 169540280 G A LRRIQ4 Missense_Mutation p.E191K 0.16 deleterious(0.04) possibly_damaging(0.609) TCGA-FR-A7U9-06 3 179069803 179069803 G A MFN1 Missense_Mutation p.M76I 0.25 deleterious(0) possibly_damaging(0.533) TCGA-FR-A7U9-06 3 180372715 180372715 C T CCDC39 Silent p.T255T 0.25 TCGA-FR-A7U9-06 3 182584156 182584156 C T ATP11B Missense_Mutation p.S515F 0.11 deleterious(0.02) benign(0.315) TCGA-FR-A7U9-06 3 183898376 183898376 C T AP2M1 Intron 0.11 TCGA-FR-A7U9-06 3 184071917 184071917 G A CLCN2 Silent p.L565L 0.14 TCGA-FR-A7U9-06 3 184076829 184076829 G A CLCN2 Missense_Mutation p.P52S 0.30 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 3 184090609 184090609 C T THPO Missense_Mutation p.E252K 0.19 tolerated_low_confidence(0.21) benign(0.002) TCGA-FR-A7U9-06 3 184700355 184700355 C T VPS8 Missense_Mutation p.A1141V 0.14 tolerated(0.13) benign(0.005) TCGA-FR-A7U9-06 3 185960309 185960309 C T DGKG Missense_Mutation p.E604K 0.20 deleterious(0) probably_damaging(0.987) TCGA-FR-A7U9-06 3 189689784 189689784 C T LEPREL1 Missense_Mutation p.R571K 0.17 tolerated(0.81) benign(0.017) TCGA-FR-A7U9-06 3 189700914 189700914 C T LEPREL1 Silent p.V415V 0.20 TCGA-FR-A7U9-06 3 190993053 190993053 G A UTS2B Missense_Mutation p.P108S 0.18 tolerated(0.11) possibly_damaging(0.593) TCGA-FR-A7U9-06 3 193039590 193039590 G A ATP13A5 Missense_Mutation p.P599S 0.15 deleterious(0.02) probably_damaging(1) TCGA-FR-A7U9-06 3 194062051 194062051 C T CPN2 Missense_Mutation p.E461K 0.19 tolerated(0.17) benign(0.001) TCGA-FR-A7U9-06 3 19479712 19479712 T G KCNH8 Missense_Mutation p.L412V 0.15 tolerated(0.56) benign(0.02) TCGA-FR-A7U9-06 3 197401425 197401425 G A KIAA0226 3'Flank 0.22 TCGA-FR-A7U9-06 3 19921235 19921235 C T EFHB Nonsense_Mutation p.W797* 0.29 TCGA-FR-A7U9-06 3 20153274 20153274 C T KAT2B Silent p.F346F 0.22 TCGA-FR-A7U9-06 3 25833329 25833329 G A OXSM Missense_Mutation p.G273D 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 3 26751075 26751075 G A LRRC3B 5'UTR 0.38 TCGA-FR-A7U9-06 3 26751805 26751805 C T LRRC3B Silent p.F214F 0.12 TCGA-FR-A7U9-06 3 2908486 2908486 C T CNTN4 Missense_Mutation p.R169C 0.18 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 3 30875362 30875362 G A GADL1 Missense_Mutation p.L345F 0.10 deleterious(0.04) probably_damaging(0.97) TCGA-FR-A7U9-06 3 36880169 36880169 C T TRANK1 Silent p.E1729E 0.29 TCGA-FR-A7U9-06 3 36898167 36898167 G A TRANK1 Missense_Mutation p.P972S 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A7U9-06 3 38289169 38289169 C T OXSR1 Missense_Mutation p.S423L 0.25 tolerated(0.13) benign(0.001) TCGA-FR-A7U9-06 3 38390113 38390113 C T XYLB Missense_Mutation p.P44S 0.30 tolerated(0.06) possibly_damaging(0.571) TCGA-FR-A7U9-06 3 38645475 38645475 C T SCN5A Missense_Mutation p.E540K 0.14 tolerated(0.11) probably_damaging(0.997) TCGA-FR-A7U9-06 3 38739957 38739957 C T SCN10A Missense_Mutation p.R1585K 0.20 deleterious(0.04) probably_damaging(0.946) TCGA-FR-A7U9-06 3 38768117 38768117 C T SCN10A Missense_Mutation p.E1023K 0.26 tolerated(0.1) benign(0.328) TCGA-FR-A7U9-06 3 38768280 38768280 C T SCN10A Silent p.R968R 0.21 TCGA-FR-A7U9-06 3 38946680 38946680 T C SCN11A Intron 0.16 TCGA-FR-A7U9-06 3 40456318 40456318 G A ENTPD3 Missense_Mutation p.G195E 0.20 tolerated(0.05) probably_damaging(0.951) TCGA-FR-A7U9-06 3 42299711 42299711 C T CCK Missense_Mutation p.R76Q 0.25 deleterious(0.01) probably_damaging(0.935) TCGA-FR-A7U9-06 3 42906559 42906559 C T ACKR2 Missense_Mutation p.P189S 0.18 tolerated(0.44) benign(0.026) TCGA-FR-A7U9-06 3 42916093 42916093 C T CYP8B1 Missense_Mutation p.D406N 0.14 tolerated(0.26) benign(0.025) TCGA-FR-A7U9-06 3 43122366 43122366 G C POMGNT2 Silent p.A186A 0.22 TCGA-FR-A7U9-06 3 44492847 44492847 G A ZNF445 Missense_Mutation p.P186L 0.11 tolerated(0.05) possibly_damaging(0.713) TCGA-FR-A7U9-06 3 4459812 4459812 C T SUMF1 Missense_Mutation p.D203N 0.10 tolerated(0.18) benign(0.023) TCGA-FR-A7U9-06 3 4459813 4459813 C T SUMF1 Silent p.P202P 0.10 TCGA-FR-A7U9-06 3 44948573 44948573 G A TGM4 Missense_Mutation p.G403E 0.13 tolerated(0.14) benign(0.105) TCGA-FR-A7U9-06 3 44986726 44986726 G A ZDHHC3 Missense_Mutation p.P122L 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-FR-A7U9-06 3 44986727 44986727 G A ZDHHC3 Missense_Mutation p.P122S 0.12 tolerated(0.22) benign(0.361) TCGA-FR-A7U9-06 3 45709805 45709805 C A LIMD1 Nonsense_Mutation p.S533* 0.24 TCGA-FR-A7U9-06 3 46245468 46245468 A G CCR1 Missense_Mutation p.Y113H 0.09 deleterious(0.03) benign(0.134) TCGA-FR-A7U9-06 3 46398981 46398981 G A CCR2 5'UTR 0.27 TCGA-FR-A7U9-06 3 46450030 46450030 C T CCRL2 Silent p.L166L 0.21 TCGA-FR-A7U9-06 3 47284673 47284673 G A KIF9 Missense_Mutation p.S526F 0.21 deleterious(0.02) benign(0.398) TCGA-FR-A7U9-06 3 47908773 47908773 G A MAP4 Missense_Mutation p.S1010F 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 3 48607605 48607605 C T COL7A1 Missense_Mutation p.D2483N 0.21 possibly_damaging(0.47) TCGA-FR-A7U9-06 3 48607767 48607767 C T COL7A1 Missense_Mutation p.G2461R 0.32 probably_damaging(1) TCGA-FR-A7U9-06 3 48628922 48628922 G A COL7A1 Silent p.Y537Y 0.34 TCGA-FR-A7U9-06 3 49314058 49314058 G A C3orf62 Missense_Mutation p.P83L 0.22 tolerated(0.07) benign(0.006) TCGA-FR-A7U9-06 3 49568841 49568841 C T DAG1 Silent p.I299I 0.28 TCGA-FR-A7U9-06 3 49695230 49695230 C T BSN Silent p.I2747I 0.10 TCGA-FR-A7U9-06 3 49695585 49695585 G A BSN Missense_Mutation p.E2866K 0.11 unknown(0) TCGA-FR-A7U9-06 3 50222107 50222107 C T SEMA3F Missense_Mutation p.P439L 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 3 50255194 50255194 G A SLC38A3 RNA 0.32 TCGA-FR-A7U9-06 3 50334628 50334628 G A NAT6 Silent p.S111S 0.31 TCGA-FR-A7U9-06 3 52548211 52548211 G A STAB1 Silent p.Q1176Q 0.12 TCGA-FR-A7U9-06 3 54604105 54604105 G A CACNA2D3 Missense_Mutation p.D288N 0.14 tolerated(0.4) probably_damaging(0.998) TCGA-FR-A7U9-06 3 56330403 56330403 G A ERC2 Missense_Mutation p.H240Y 0.27 deleterious(0.01) possibly_damaging(0.803) TCGA-FR-A7U9-06 3 56789111 56789111 G A ARHGEF3 Silent p.A123A 0.17 TCGA-FR-A7U9-06 3 58135865 58135865 G A FLNB Missense_Mutation p.G2124E 0.08 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 3 58140541 58140541 G A FLNB Missense_Mutation p.E2251K 0.14 deleterious(0.04) probably_damaging(1) TCGA-FR-A7U9-06 3 59737996 59737996 C T FHIT Missense_Mutation p.E134K 0.20 deleterious(0) benign(0.397) TCGA-FR-A7U9-06 3 64085165 64085165 G A PRICKLE2 Silent p.L699L 0.23 TCGA-FR-A7U9-06 3 74347217 74347217 C T CNTN3 Silent p.R764R 0.25 TCGA-FR-A7U9-06 3 77147282 77147282 C T ROBO2 Missense_Mutation p.P76L 0.12 deleterious(0) unknown(0) TCGA-FR-A7U9-06 3 77612334 77612334 C T ROBO2 Silent p.I528I 0.24 TCGA-FR-A7U9-06 3 77671466 77671466 G A ROBO2 Missense_Mutation p.D1231N 0.19 tolerated(0.08) possibly_damaging(0.539) TCGA-FR-A7U9-06 3 79638986 79638986 G A ROBO1 Nonsense_Mutation p.Q26* 0.18 TCGA-FR-A7U9-06 3 89259510 89259510 G A EPHA3 Missense_Mutation p.M218I 0.15 deleterious(0) benign(0.005) TCGA-FR-A7U9-06 3 96706780 96706780 C T EPHA6 Missense_Mutation p.P353S 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 3 97454957 97454957 C T EPHA6 Silent p.I1041I 0.19 TCGA-FR-A7U9-06 3 98251691 98251691 G A GPR15 Missense_Mutation p.E272K 0.23 tolerated(0.59) benign(0.026) TCGA-FR-A7U9-06 4 100203534 100203534 G A ADH1A Missense_Mutation p.S266L 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 4 100229013 100229013 G A ADH1B Missense_Mutation p.T371I 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-FR-A7U9-06 4 100239243 100239243 G A ADH1B Silent p.I73I 0.21 TCGA-FR-A7U9-06 4 100239950 100239950 G A ADH1B Missense_Mutation p.R38C 0.16 deleterious(0.05) benign(0.26) TCGA-FR-A7U9-06 4 100349094 100349094 C T ADH7 Missense_Mutation p.G154S 0.24 deleterious(0) possibly_damaging(0.651) TCGA-FR-A7U9-06 4 10099417 10099417 G A WDR1 Missense_Mutation p.P159L 0.33 deleterious(0) probably_damaging(0.942) TCGA-FR-A7U9-06 4 103560945 103560945 G A MANBA Nonsense_Mutation p.Q647* 0.17 TCGA-FR-A7U9-06 4 104512707 104512707 C T TACR3 Missense_Mutation p.S341N 0.11 deleterious(0) possibly_damaging(0.904) TCGA-FR-A7U9-06 4 108614940 108614940 G A PAPSS1 Missense_Mutation p.S133L 0.17 deleterious(0) probably_damaging(0.989) TCGA-FR-A7U9-06 4 108948883 108948883 T C HADH Missense_Mutation p.Y226H 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 4 109670409 109670409 C T ETNPPL Missense_Mutation p.M304I 0.09 tolerated(0.19) benign(0.034) TCGA-FR-A7U9-06 4 111398170 111398170 C T ENPEP Silent p.L200L 0.12 TCGA-FR-A7U9-06 4 111474532 111474532 C T ENPEP Nonsense_Mutation p.R855* 0.22 TCGA-FR-A7U9-06 4 113352339 113352339 C T ALPK1 Nonsense_Mutation p.R546* 0.17 TCGA-FR-A7U9-06 4 114275780 114275780 C T ANK2 Silent p.D2002D 0.18 TCGA-FR-A7U9-06 4 114824633 114824633 G A ARSJ Silent p.S199S 0.15 TCGA-FR-A7U9-06 4 119979067 119979067 G A SYNPO2 Missense_Mutation p.R1255K 0.24 tolerated(0.17) benign(0.205) TCGA-FR-A7U9-06 4 123151349 123151349 T A KIAA1109 Missense_Mutation p.H1102Q 0.19 benign(0.021) TCGA-FR-A7U9-06 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.27 probably_damaging(0.999) TCGA-FR-A7U9-06 4 126355574 126355574 T G FAT4 Missense_Mutation p.V2398G 0.24 probably_damaging(0.93) TCGA-FR-A7U9-06 4 126370287 126370287 G A FAT4 Missense_Mutation p.E2706K 0.16 benign(0.232) TCGA-FR-A7U9-06 4 126389908 126389908 G A FAT4 Silent p.K4047K 0.22 TCGA-FR-A7U9-06 4 128651696 128651696 C T SLC25A31 5'UTR 0.16 TCGA-FR-A7U9-06 4 128743951 128743951 G A HSPA4L Missense_Mutation p.E614K 0.17 deleterious(0) possibly_damaging(0.831) TCGA-FR-A7U9-06 4 144918707 144918707 G A GYPB Missense_Mutation p.R86C 0.18 tolerated(0.17) unknown(0) TCGA-FR-A7U9-06 4 148441092 148441092 G A EDNRA Silent p.G170G 0.11 TCGA-FR-A7U9-06 4 148968100 148968100 C T ARHGAP10 Missense_Mutation p.S642F 0.25 tolerated(0.16) benign(0.365) TCGA-FR-A7U9-06 4 154237130 154237130 C T TRIM2 Silent p.F587F 0.21 TCGA-FR-A7U9-06 4 154626094 154626094 T C TLR2 Missense_Mutation p.F679L 0.13 deleterious(0) benign(0.146) TCGA-FR-A7U9-06 4 155241980 155241980 G A DCHS2 Missense_Mutation p.P1069L 0.17 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 4 155312429 155312429 C T DCHS2 Silent p.T7T 0.15 TCGA-FR-A7U9-06 4 155459212 155459212 G A PLRG1 Silent p.F400F 0.19 TCGA-FR-A7U9-06 4 155507255 155507255 G A FGA Silent p.L442L 0.19 TCGA-FR-A7U9-06 4 155507269 155507269 C T FGA Missense_Mutation p.G438R 0.16 deleterious(0) probably_damaging(0.994) TCGA-FR-A7U9-06 4 156274387 156274387 T A MAP9 Nonsense_Mutation p.K496* 0.19 TCGA-FR-A7U9-06 4 159052095 159052095 C T FAM198B Missense_Mutation p.G407R 0.16 tolerated(0.11) benign(0.234) TCGA-FR-A7U9-06 4 162577587 162577587 C T FSTL5 Missense_Mutation p.G263R 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 4 164534594 164534594 G A MARCH1 Intron 0.11 TCGA-FR-A7U9-06 4 16510269 16510269 C T LDB2 Silent p.R260R 0.10 TCGA-FR-A7U9-06 4 166916254 166916254 G A TLL1 Missense_Mutation p.E186K 0.16 deleterious(0.01) possibly_damaging(0.898) TCGA-FR-A7U9-06 4 167833844 167833844 G A SPOCK3 Missense_Mutation p.S137F 0.22 tolerated(0.06) possibly_damaging(0.568) TCGA-FR-A7U9-06 4 167983677 167983677 G A SPOCK3 Silent p.F70F 0.19 TCGA-FR-A7U9-06 4 169300898 169300898 G A DDX60L Silent p.S1400S 0.16 TCGA-FR-A7U9-06 4 169433338 169433338 G A PALLD Missense_Mutation p.G228E 0.24 tolerated(1) benign(0) TCGA-FR-A7U9-06 4 169433339 169433339 G A PALLD Silent p.G228G 0.24 TCGA-FR-A7U9-06 4 175750024 175750024 G C GLRA3 5'UTR 0.25 TCGA-FR-A7U9-06 4 175898948 175898948 C T ADAM29 Nonsense_Mutation p.Q758* 0.22 TCGA-FR-A7U9-06 4 177608357 177608357 G A VEGFC Missense_Mutation p.H377Y 0.21 deleterious(0) benign(0.247) TCGA-FR-A7U9-06 4 177650814 177650814 C T VEGFC Nonsense_Mutation p.W78* 0.28 TCGA-FR-A7U9-06 4 1801167 1801167 C T FGFR3 Missense_Mutation p.A99V 0.27 tolerated(1) benign(0.008) TCGA-FR-A7U9-06 4 183245182 183245182 G A TENM3 Silent p.V3V 0.35 TCGA-FR-A7U9-06 4 183635354 183635354 C T TENM3 Missense_Mutation p.T779I 0.17 tolerated(0.06) possibly_damaging(0.86) TCGA-FR-A7U9-06 4 183650312 183650312 G A TENM3 Missense_Mutation p.G855R 0.22 tolerated(0.21) benign(0.244) TCGA-FR-A7U9-06 4 183710412 183710412 C T TENM3 Missense_Mutation p.S1824L 0.19 deleterious(0.01) possibly_damaging(0.587) TCGA-FR-A7U9-06 4 185646133 185646133 G A CENPU Missense_Mutation p.P100S 0.08 tolerated(0.06) benign(0.05) TCGA-FR-A7U9-06 4 187517849 187517849 G A FAT1 Missense_Mutation p.P4282L 0.21 probably_damaging(0.999) TCGA-FR-A7U9-06 4 187630170 187630170 G A FAT1 Missense_Mutation p.P271L 0.18 benign(0.048) TCGA-FR-A7U9-06 4 187630171 187630171 G A FAT1 Missense_Mutation p.P271S 0.19 possibly_damaging(0.72) TCGA-FR-A7U9-06 4 189060707 189060707 G A TRIML1 5'UTR 0.15 TCGA-FR-A7U9-06 4 20493457 20493457 C T SLIT2 Silent p.I283I 0.18 TCGA-FR-A7U9-06 4 20512156 20512156 G A SLIT2 Missense_Mutation p.G318E 0.14 deleterious(0.02) possibly_damaging(0.894) TCGA-FR-A7U9-06 4 22737685 22737685 A G GBA3 Missense_Mutation p.Q47R 0.13 tolerated(0.12) probably_damaging(0.985) TCGA-FR-A7U9-06 4 22748972 22748972 C T GBA3 Missense_Mutation p.P114S 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-FR-A7U9-06 4 2306813 2306813 G A ZFYVE28 Silent p.S418S 0.15 TCGA-FR-A7U9-06 4 2515693 2515693 C T RNF4 3'UTR 0.36 TCGA-FR-A7U9-06 4 36212219 36212219 C T ARAP2 Missense_Mutation p.R427K 0.23 tolerated(0.4) benign(0.015) TCGA-FR-A7U9-06 4 38828804 38828804 G A TLR6 Missense_Mutation p.P764L 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-FR-A7U9-06 4 39466692 39466692 T C LIAS Silent p.G140G 0.34 TCGA-FR-A7U9-06 4 40438494 40438494 G A RBM47 Missense_Mutation p.P432S 0.35 tolerated_low_confidence(0.64) benign(0.001) TCGA-FR-A7U9-06 4 40440616 40440616 C T RBM47 Missense_Mutation p.E99K 0.27 deleterious(0.01) benign(0.355) TCGA-FR-A7U9-06 4 41605918 41605918 A T LIMCH1 Missense_Mutation p.K124I 0.17 deleterious(0) probably_damaging(0.962) TCGA-FR-A7U9-06 4 41749407 41749407 C T PHOX2B Missense_Mutation p.E130K 0.24 deleterious(0) probably_damaging(0.994) TCGA-FR-A7U9-06 4 4198997 4198997 C T OTOP1 Missense_Mutation p.G522R 0.14 tolerated(0.49) benign(0.004) TCGA-FR-A7U9-06 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.15 TCGA-FR-A7U9-06 4 47839965 47839965 A T CORIN Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.01) benign(0) TCGA-FR-A7U9-06 4 48604129 48604129 G A FRYL Missense_Mutation p.P315S 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A7U9-06 4 515606 515606 C T PIGG Missense_Mutation p.S497L 0.16 tolerated(0.3) benign(0.005) TCGA-FR-A7U9-06 4 53773654 53773654 G A SCFD2 Silent p.L604L 0.18 TCGA-FR-A7U9-06 4 54342923 54342923 G A LNX1 Missense_Mutation p.P630L 0.19 deleterious(0) benign(0.049) TCGA-FR-A7U9-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 4 56858245 56858245 C T CEP135 Missense_Mutation p.S668L 0.13 deleterious(0) benign(0.234) TCGA-FR-A7U9-06 4 57216100 57216100 G A AASDH Missense_Mutation p.S606L 0.30 deleterious(0.04) benign(0.018) TCGA-FR-A7U9-06 4 57352509 57352509 C T SRP72 Missense_Mutation p.P369S 0.32 tolerated(0.06) possibly_damaging(0.773) TCGA-FR-A7U9-06 4 619452 619452 G A PDE6B Missense_Mutation p.D13N 0.13 tolerated(0.09) benign(0.002) TCGA-FR-A7U9-06 4 70080457 70080457 C T UGT2B11 5'Flank 0.30 TCGA-FR-A7U9-06 4 70346364 70346364 C T UGT2B4 Silent p.G525G 0.33 TCGA-FR-A7U9-06 4 70896501 70896501 C T HTN3 Missense_Mutation p.S15F 0.16 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FR-A7U9-06 4 70898884 70898884 G A HTN3 Missense_Mutation p.E35K 0.26 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-FR-A7U9-06 4 71024325 71024325 C T C4orf40 Missense_Mutation p.S119L 0.17 tolerated(0.07) unknown(0) TCGA-FR-A7U9-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.10 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-FR-A7U9-06 4 71394437 71394437 C T AMTN Intron 0.17 TCGA-FR-A7U9-06 4 71396948 71396948 G A AMTN Missense_Mutation p.V184M 0.19 tolerated(0.25) benign(0.013) TCGA-FR-A7U9-06 4 74447960 74447960 T C RASSF6 Silent p.V237V 0.13 TCGA-FR-A7U9-06 4 75066988 75066988 A T MTHFD2L Missense_Mutation p.T205S 0.21 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 4 75167590 75167590 C A MTHFD2L 3'UTR 0.44 TCGA-FR-A7U9-06 4 76734422 76734422 C T USO1 Missense_Mutation p.P964S 0.19 tolerated_low_confidence(0.79) benign(0) TCGA-FR-A7U9-06 4 7840301 7840301 G A AFAP1 Missense_Mutation p.P226S 0.23 tolerated(0.08) benign(0.155) TCGA-FR-A7U9-06 4 79428606 79428606 C T FRAS1 Silent p.I3116I 0.20 TCGA-FR-A7U9-06 4 79430112 79430112 C T FRAS1 Silent p.P3244P 0.23 TCGA-FR-A7U9-06 4 81187996 81187996 C G FGF5 Silent p.L6L 0.13 TCGA-FR-A7U9-06 4 82090867 82090867 C T PRKG2 Missense_Mutation p.M266I 0.26 deleterious(0) possibly_damaging(0.675) TCGA-FR-A7U9-06 4 8288480 8288480 G A HTRA3 Silent p.S226S 0.13 TCGA-FR-A7U9-06 4 84231943 84231943 G A HPSE Silent p.F258F 0.23 TCGA-FR-A7U9-06 4 84337955 84337955 G A HELQ Missense_Mutation p.P1043S 0.21 deleterious(0.03) possibly_damaging(0.78) TCGA-FR-A7U9-06 4 8465723 8465723 C T TRMT44 Silent p.I405I 0.15 TCGA-FR-A7U9-06 4 86988964 86988964 G A MAPK10 Missense_Mutation p.S316F 0.10 tolerated(0.09) benign(0.046) TCGA-FR-A7U9-06 4 870960 870960 G A GAK Missense_Mutation p.P631L 0.14 deleterious(0) probably_damaging(0.977) TCGA-FR-A7U9-06 4 88766298 88766298 G A MEPE Missense_Mutation p.R93K 0.16 tolerated(0.24) benign(0.124) TCGA-FR-A7U9-06 4 89052264 89052264 C T ABCG2 Silent p.R160R 0.12 TCGA-FR-A7U9-06 4 91229845 91229845 G A CCSER1 Missense_Mutation p.R137K 0.18 tolerated(1) benign(0.052) TCGA-FR-A7U9-06 4 94138030 94138030 G A GRID2 Missense_Mutation p.D311N 0.16 tolerated(0.22) probably_damaging(0.969) TCGA-FR-A7U9-06 4 94138038 94138038 G A GRID2 Silent p.K313K 0.23 TCGA-FR-A7U9-06 4 94145835 94145835 G A GRID2 Missense_Mutation p.R345Q 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-FR-A7U9-06 5 121759148 121759148 C T SNCAIP Missense_Mutation p.S239L 0.17 tolerated(0.12) benign(0.005) TCGA-FR-A7U9-06 5 127730841 127730841 G A FBN2 Missense_Mutation p.P402L 0.17 tolerated(0.07) benign(0.026) TCGA-FR-A7U9-06 5 128365384 128365384 G A SLC27A6 Missense_Mutation p.R556Q 0.31 deleterious(0.05) benign(0.038) TCGA-FR-A7U9-06 5 134782848 134782848 G A TIFAB 3'UTR 0.29 TCGA-FR-A7U9-06 5 135692448 135692448 C T TRPC7 Missense_Mutation p.D210N 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 5 13692161 13692161 G A DNAH5 Missense_Mutation p.L4603F 0.15 possibly_damaging(0.849) TCGA-FR-A7U9-06 5 13700926 13700926 C T DNAH5 Missense_Mutation p.E4516K 0.18 possibly_damaging(0.621) TCGA-FR-A7U9-06 5 137426852 137426852 G A WNT8A 3'UTR 0.21 TCGA-FR-A7U9-06 5 137534326 137534326 G A CDC23 Missense_Mutation p.S267F 0.18 deleterious(0) possibly_damaging(0.635) TCGA-FR-A7U9-06 5 13807748 13807748 C T DNAH5 Missense_Mutation p.M2613I 0.29 benign(0.001) TCGA-FR-A7U9-06 5 138699450 138699450 T G PAIP2 Intron 0.39 TCGA-FR-A7U9-06 5 13871098 13871098 G A DNAH5 Silent p.F1204F 0.20 TCGA-FR-A7U9-06 5 138718196 138718196 G A SLC23A1 Silent p.I45I 0.09 TCGA-FR-A7U9-06 5 13871874 13871874 C T DNAH5 Missense_Mutation p.E1133K 0.22 benign(0.292) TCGA-FR-A7U9-06 5 13900509 13900509 G A DNAH5 Missense_Mutation p.H689Y 0.34 benign(0.415) TCGA-FR-A7U9-06 5 13911527 13911527 C T DNAH5 Missense_Mutation p.E538K 0.14 possibly_damaging(0.635) TCGA-FR-A7U9-06 5 140073846 140073846 C T HARS2 Missense_Mutation p.S127F 0.30 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 5 140073847 140073847 C T HARS2 Silent p.S127S 0.28 TCGA-FR-A7U9-06 5 140167934 140167934 G A PCDHA1 Missense_Mutation p.A687T 0.07 tolerated_low_confidence(0.27) benign(0.021) TCGA-FR-A7U9-06 5 140176221 140176221 G A PCDHA2 Missense_Mutation p.E558K 0.27 deleterious_low_confidence(0.02) benign(0.196) TCGA-FR-A7U9-06 5 140176753 140176753 G A PCDHA2 Missense_Mutation p.G735E 0.38 deleterious_low_confidence(0.02) benign(0.135) TCGA-FR-A7U9-06 5 140181133 140181133 C T PCDHA3 Silent p.F117F 0.32 TCGA-FR-A7U9-06 5 140182178 140182178 G A PCDHA3 Missense_Mutation p.E466K 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 5 140203180 140203180 C T PCDHA5 Missense_Mutation p.S607L 0.40 tolerated_low_confidence(0.05) possibly_damaging(0.511) TCGA-FR-A7U9-06 5 140215791 140215791 C T PCDHA7 Missense_Mutation p.S608L 0.19 tolerated_low_confidence(0.06) benign(0.358) TCGA-FR-A7U9-06 5 140221522 140221522 C T PCDHA8 Missense_Mutation p.P206S 0.29 tolerated_low_confidence(0.3) benign(0.012) TCGA-FR-A7U9-06 5 140251032 140251032 G A PCDHA11 Missense_Mutation p.E782K 0.38 tolerated_low_confidence(0.81) benign(0.004) TCGA-FR-A7U9-06 5 140262844 140262844 G A PCDHA13 Missense_Mutation p.A331T 0.21 tolerated_low_confidence(0.39) benign(0.024) TCGA-FR-A7U9-06 5 140433086 140433086 A G PCDHB1 Silent p.P677P 0.28 TCGA-FR-A7U9-06 5 140433185 140433185 C T PCDHB1 Silent p.F710F 0.20 TCGA-FR-A7U9-06 5 140476783 140476783 G A PCDHB2 3'UTR 0.32 TCGA-FR-A7U9-06 5 140516679 140516679 G A PCDHB5 Missense_Mutation p.D555N 0.33 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-FR-A7U9-06 5 140530128 140530128 C T PCDHB6 Missense_Mutation p.S97F 0.17 tolerated(0.19) benign(0.032) TCGA-FR-A7U9-06 5 140552767 140552767 C T PCDHB7 Silent p.F117F 0.22 TCGA-FR-A7U9-06 5 140554256 140554256 C G PCDHB7 Missense_Mutation p.L614V 0.11 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-FR-A7U9-06 5 140562084 140562084 G A PCDHB16 5'UTR 0.21 TCGA-FR-A7U9-06 5 140594850 140594850 C T PCDHB13 Silent p.S385S 0.28 TCGA-FR-A7U9-06 5 140604457 140604457 C T PCDHB14 Silent p.V460V 0.31 TCGA-FR-A7U9-06 5 140711077 140711077 G A PCDHGA1 Missense_Mutation p.E276K 0.30 tolerated_low_confidence(0.22) benign(0.03) TCGA-FR-A7U9-06 5 140719540 140719540 C T PCDHGA2 Silent p.I334I 0.29 TCGA-FR-A7U9-06 5 140720665 140720665 C T PCDHGA2 Silent p.I709I 0.29 TCGA-FR-A7U9-06 5 140741086 140741086 G C PCDHGB2 Missense_Mutation p.A462P 0.20 tolerated(1) benign(0.044) TCGA-FR-A7U9-06 5 140764153 140764153 C T PCDHGA7 Silent p.L563L 0.23 TCGA-FR-A7U9-06 5 140866560 140866560 C T PCDHGC4 Missense_Mutation p.S607F 0.33 tolerated(0.23) possibly_damaging(0.893) TCGA-FR-A7U9-06 5 141041393 141041393 G A ARAP3 Intron 0.28 TCGA-FR-A7U9-06 5 141974773 141974773 G A FGF1 3'UTR 0.31 TCGA-FR-A7U9-06 5 14406039 14406039 C T TRIO Missense_Mutation p.A1600V 0.26 possibly_damaging(0.632) TCGA-FR-A7U9-06 5 145383624 145383624 G A SH3RF2 Missense_Mutation p.D218N 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 5 145609332 145609332 T A RBM27 Missense_Mutation p.Y150N 0.21 tolerated(0.17) probably_damaging(0.996) TCGA-FR-A7U9-06 5 147040675 147040675 C T JAKMIP2 Missense_Mutation p.E155K 0.32 deleterious(0) probably_damaging(0.969) TCGA-FR-A7U9-06 5 147493937 147493937 G A SPINK5 Missense_Mutation p.E634K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 5 147498583 147498583 C T SPINK5 Missense_Mutation p.R759C 0.16 tolerated(0.05) possibly_damaging(0.466) TCGA-FR-A7U9-06 5 14751213 14751213 C T ANKH Missense_Mutation p.D218N 0.18 tolerated(0.51) possibly_damaging(0.535) TCGA-FR-A7U9-06 5 147582636 147582636 G A SPINK6 5'UTR 0.16 TCGA-FR-A7U9-06 5 149003685 149003685 G A ARHGEF37 Silent p.Q482Q 0.28 TCGA-FR-A7U9-06 5 149324044 149324044 G A PDE6A Silent p.L65L 0.13 TCGA-FR-A7U9-06 5 149644516 149644516 C T CAMK2A Intron 0.14 TCGA-FR-A7U9-06 5 151775036 151775036 G A NMUR2 Silent p.L307L 0.22 TCGA-FR-A7U9-06 5 153077667 153077667 G A GRIA1 Missense_Mutation p.D410N 0.17 tolerated(0.18) benign(0.197) TCGA-FR-A7U9-06 5 153085506 153085506 G A GRIA1 Missense_Mutation p.E578K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 5 153149821 153149821 C T GRIA1 Nonsense_Mutation p.R716* 0.17 TCGA-FR-A7U9-06 5 156378678 156378678 G A TIMD4 Missense_Mutation p.P175L 0.30 deleterious(0.04) possibly_damaging(0.879) TCGA-FR-A7U9-06 5 156381430 156381430 C T TIMD4 Silent p.Q132Q 0.26 TCGA-FR-A7U9-06 5 156390253 156390253 G A TIMD4 5'UTR 0.40 TCGA-FR-A7U9-06 5 156589674 156589674 G A FAM71B Silent p.I534I 0.34 TCGA-FR-A7U9-06 5 157073807 157073807 G A SOX30 Missense_Mutation p.R409C 0.34 deleterious(0) probably_damaging(0.993) TCGA-FR-A7U9-06 5 160063233 160063233 G A ATP10B Missense_Mutation p.L362F 0.16 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 5 16067554 16067554 C T MARCH11 3'UTR 0.43 TCGA-FR-A7U9-06 5 161309593 161309593 G A GABRA1 Missense_Mutation p.E197K 0.13 tolerated(0.71) benign(0.067) TCGA-FR-A7U9-06 5 168096961 168096961 G A SLIT3 Missense_Mutation p.S1388L 0.30 deleterious(0.01) benign(0.347) TCGA-FR-A7U9-06 5 168098366 168098366 G A SLIT3 Missense_Mutation p.P1322S 0.29 tolerated(0.58) benign(0.007) TCGA-FR-A7U9-06 5 170147385 170147385 C T KCNIP1 Missense_Mutation p.P94S 0.18 deleterious(0) possibly_damaging(0.614) TCGA-FR-A7U9-06 5 172396499 172396499 G A RPL26L1 Silent p.E131E 0.12 TCGA-FR-A7U9-06 5 176308797 176308797 G A HK3 Silent p.I763I 0.27 TCGA-FR-A7U9-06 5 176759156 176759156 G A LMAN2 Silent p.I334I 0.09 TCGA-FR-A7U9-06 5 176825245 176825245 C T SLC34A1 Silent p.P626P 0.23 TCGA-FR-A7U9-06 5 178199482 178199482 C T AACSP1 RNA 0.30 TCGA-FR-A7U9-06 5 178585860 178585860 G A ADAMTS2 Silent p.I332I 0.22 TCGA-FR-A7U9-06 5 21752211 21752211 C T CDH12 Missense_Mutation p.D674N 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 5 21752283 21752283 T A CDH12 Nonsense_Mutation p.K650* 0.39 TCGA-FR-A7U9-06 5 23509179 23509179 G T PRDM9 Nonsense_Mutation p.E13* 0.17 TCGA-FR-A7U9-06 5 24487660 24487660 A T CDH10 3'UTR 0.23 TCGA-FR-A7U9-06 5 31297487 31297487 G A CDH6 Silent p.Q205Q 0.17 TCGA-FR-A7U9-06 5 33457366 33457366 C T TARS Missense_Mutation p.S314F 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 5 33576215 33576215 T G ADAMTS12 Missense_Mutation p.K1306Q 0.20 tolerated(0.16) benign(0.011) TCGA-FR-A7U9-06 5 34803856 34803856 A G RAI14 Missense_Mutation p.H102R 0.31 tolerated(0.35) benign(0.305) TCGA-FR-A7U9-06 5 35771741 35771741 G A SPEF2 Missense_Mutation p.E1278K 0.16 deleterious(0.03) possibly_damaging(0.534) TCGA-FR-A7U9-06 5 35814566 35814566 G A SPEF2 Missense_Mutation p.D1794N 0.15 tolerated(0.1) probably_damaging(0.999) TCGA-FR-A7U9-06 5 37168942 37168942 T G C5orf42 Missense_Mutation p.K2395T 0.19 tolerated(0.18) benign(0.108) TCGA-FR-A7U9-06 5 37443452 37443452 C T WDR70 Nonsense_Mutation p.R222* 0.30 TCGA-FR-A7U9-06 5 38350679 38350679 G A EGFLAM Missense_Mutation p.G123E 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A7U9-06 5 38876410 38876410 C T OSMR Nonsense_Mutation p.Q61* 0.22 TCGA-FR-A7U9-06 5 39203057 39203057 C T FYB Silent p.A12A 0.20 TCGA-FR-A7U9-06 5 40934539 40934539 G A C7 Missense_Mutation p.G84E 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 5 41019060 41019060 C T MROH2B Silent p.R834R 0.36 TCGA-FR-A7U9-06 5 41176647 41176647 G A C6 Silent p.F366F 0.42 TCGA-FR-A7U9-06 5 45262296 45262296 C T HCN1 Silent p.L800L 0.38 TCGA-FR-A7U9-06 5 45353229 45353229 G A HCN1 Silent p.L450L 0.34 TCGA-FR-A7U9-06 5 45645569 45645569 G A HCN1 Silent p.D189D 0.25 TCGA-FR-A7U9-06 5 50123842 50123842 C T PARP8 Missense_Mutation p.S681F 0.10 tolerated(0.05) possibly_damaging(0.837) TCGA-FR-A7U9-06 5 50689488 50689488 G A ISL1 3'UTR 0.12 TCGA-FR-A7U9-06 5 5182221 5182221 G A ADAMTS16 Nonsense_Mutation p.W189* 0.27 TCGA-FR-A7U9-06 5 5182222 5182222 G A ADAMTS16 Nonsense_Mutation p.W189* 0.28 TCGA-FR-A7U9-06 5 52347268 52347268 C T ITGA2 Missense_Mutation p.P220S 0.26 tolerated(0.05) possibly_damaging(0.846) TCGA-FR-A7U9-06 5 5239818 5239818 C T ADAMTS16 Missense_Mutation p.P768L 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 5 63894226 63894226 C T RGS7BP Missense_Mutation p.L216F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-FR-A7U9-06 5 6668368 6668368 C T SRD5A1 Missense_Mutation p.P256L 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 5 71756902 71756902 C T ZNF366 Missense_Mutation p.S141N 0.30 deleterious_low_confidence(0.01) benign(0.013) TCGA-FR-A7U9-06 5 75886384 75886384 G A IQGAP2 Silent p.K264K 0.25 TCGA-FR-A7U9-06 5 78340264 78340264 C T DMGDH Missense_Mutation p.R286Q 0.14 tolerated(0.49) benign(0.009) TCGA-FR-A7U9-06 5 78944899 78944899 C T PAPD4 Missense_Mutation p.R305C 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A7U9-06 5 79616473 79616473 G A SPZ1 Missense_Mutation p.E147K 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-FR-A7U9-06 5 80809493 80809493 G A SSBP2 Missense_Mutation p.P109L 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A7U9-06 5 82817894 82817894 C T VCAN Missense_Mutation p.H1257Y 0.23 tolerated(0.07) benign(0.333) TCGA-FR-A7U9-06 5 82834022 82834022 A T VCAN Missense_Mutation p.T1734S 0.24 tolerated(0.12) benign(0.114) TCGA-FR-A7U9-06 5 82834023 82834023 C T VCAN Missense_Mutation p.T1734M 0.23 deleterious(0.05) benign(0.047) TCGA-FR-A7U9-06 5 88047825 88047825 G A MEF2C Silent p.S164S 0.38 TCGA-FR-A7U9-06 5 89913632 89913632 G A GPR98 Silent p.E73E 0.27 TCGA-FR-A7U9-06 5 89924433 89924433 G A GPR98 Silent p.A431A 0.13 TCGA-FR-A7U9-06 5 89979579 89979579 C T GPR98 Silent p.F1947F 0.21 TCGA-FR-A7U9-06 5 89979764 89979764 G A GPR98 Missense_Mutation p.G2009E 0.24 probably_damaging(0.999) TCGA-FR-A7U9-06 6 105298869 105298869 G A HACE1 Missense_Mutation p.S45F 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A7U9-06 6 10529907 10529907 C T GCNT2 Missense_Mutation p.P255S 0.19 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 6 105474320 105474320 G A LIN28B Missense_Mutation p.G116R 0.21 deleterious(0) possibly_damaging(0.882) TCGA-FR-A7U9-06 6 106553525 106553525 C T PRDM1 Missense_Mutation p.S497F 0.36 deleterious(0) probably_damaging(0.99) TCGA-FR-A7U9-06 6 106555155 106555155 G A PRDM1 Missense_Mutation p.E758K 0.18 tolerated(0.17) benign(0.097) TCGA-FR-A7U9-06 6 106967771 106967771 T C AIM1 Silent p.S488S 0.36 TCGA-FR-A7U9-06 6 108204194 108204194 C T SEC63 Missense_Mutation p.A611T 0.26 tolerated(0.52) benign(0.004) TCGA-FR-A7U9-06 6 10926589 10926589 G A SYCP2L Silent p.T412T 0.18 TCGA-FR-A7U9-06 6 110763562 110763562 C T SLC22A16 Silent p.T356T 0.21 TCGA-FR-A7U9-06 6 117113859 117113859 C T GPRC6A Missense_Mutation p.E743K 0.37 deleterious(0.01) benign(0.068) TCGA-FR-A7U9-06 6 11714696 11714696 G A ADTRP 3'UTR 0.15 TCGA-FR-A7U9-06 6 117248481 117248481 G A RFX6 Missense_Mutation p.R726Q 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.653) TCGA-FR-A7U9-06 6 117248672 117248672 G A RFX6 Missense_Mutation p.G790R 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-FR-A7U9-06 6 117859970 117859970 C T DCBLD1 Silent p.I316I 0.36 TCGA-FR-A7U9-06 6 12162092 12162092 C T HIVEP1 Missense_Mutation p.S2303F 0.12 deleterious(0) probably_damaging(0.983) TCGA-FR-A7U9-06 6 125231679 125231679 A G RP11-510H23.1 RNA 0.47 TCGA-FR-A7U9-06 6 127607996 127607996 G A RNF146 Missense_Mutation p.E80K 0.33 tolerated(0.15) possibly_damaging(0.669) TCGA-FR-A7U9-06 6 127775070 127775070 C T KIAA0408 Missense_Mutation p.M19I 0.28 deleterious(0.01) possibly_damaging(0.558) TCGA-FR-A7U9-06 6 128134386 128134386 G A THEMIS Missense_Mutation p.S467F 0.31 tolerated(0.08) benign(0.117) TCGA-FR-A7U9-06 6 128134451 128134451 C T THEMIS Silent p.P445P 0.34 TCGA-FR-A7U9-06 6 128150855 128150855 G A THEMIS Nonsense_Mutation p.Q159* 0.34 TCGA-FR-A7U9-06 6 128312506 128312506 C T PTPRK Nonsense_Mutation p.W977* 0.30 TCGA-FR-A7U9-06 6 128404862 128404862 C T PTPRK Missense_Mutation p.E525K 0.33 tolerated(0.06) probably_damaging(0.993) TCGA-FR-A7U9-06 6 129371060 129371060 C T LAMA2 Intron 0.28 TCGA-FR-A7U9-06 6 129807758 129807758 G A LAMA2 Missense_Mutation p.R2630Q 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 6 131191103 131191103 G A EPB41L2 Missense_Mutation p.S736F 0.38 tolerated(0.19) benign(0.44) TCGA-FR-A7U9-06 6 13365155 13365155 G A GFOD1 Silent p.L331L 0.18 TCGA-FR-A7U9-06 6 133703535 133703535 G A EYA4 Silent p.K13K 0.43 TCGA-FR-A7U9-06 6 135524407 135524407 A T MYB Missense_Mutation p.N705I 0.30 deleterious(0.05) benign(0.394) TCGA-FR-A7U9-06 6 136599117 136599117 G A BCLAF1 Missense_Mutation p.P301L 0.11 deleterious(0) possibly_damaging(0.851) TCGA-FR-A7U9-06 6 136913429 136913429 T A MAP3K5 Missense_Mutation p.E1036V 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A7U9-06 6 138655765 138655765 G A KIAA1244 Missense_Mutation p.E1928K 0.42 deleterious(0.04) benign(0.201) TCGA-FR-A7U9-06 6 139563709 139563709 G A TXLNB Missense_Mutation p.P670L 0.24 tolerated_low_confidence(0.22) benign(0.001) TCGA-FR-A7U9-06 6 152522983 152522983 G A SYNE1 Silent p.L7707L 0.35 TCGA-FR-A7U9-06 6 152557282 152557282 C T SYNE1 Missense_Mutation p.E6786K 0.34 possibly_damaging(0.566) TCGA-FR-A7U9-06 6 15497029 15497029 C T JARID2 Missense_Mutation p.R525C 0.30 deleterious(0.04) possibly_damaging(0.634) TCGA-FR-A7U9-06 6 161173212 161173212 C T PLG Missense_Mutation p.R731C 0.51 deleterious(0) probably_damaging(0.98) TCGA-FR-A7U9-06 6 161771171 161771171 C T PARK2 Nonsense_Mutation p.W453* 0.22 TCGA-FR-A7U9-06 6 170866047 170866047 A T TBP 5'UTR 0.37 TCGA-FR-A7U9-06 6 170866048 170866048 G A TBP 5'UTR 0.38 TCGA-FR-A7U9-06 6 17543158 17543158 C T CAP2 Nonsense_Mutation p.Q365* 0.21 TCGA-FR-A7U9-06 6 17675464 17675464 G A NUP153 Missense_Mutation p.S240F 0.14 deleterious(0) probably_damaging(0.979) TCGA-FR-A7U9-06 6 21201505 21201505 G A CDKAL1 Silent p.K516K 0.23 TCGA-FR-A7U9-06 6 25811994 25811994 C T SLC17A1 Missense_Mutation p.G301E 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 6 26032240 26032240 G A HIST1H3B Missense_Mutation p.P17S 0.24 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-FR-A7U9-06 6 28540711 28540711 G A SCAND3 Silent p.T985T 0.21 TCGA-FR-A7U9-06 6 29054232 29054232 G A OR2B3 Missense_Mutation p.S265F 0.24 deleterious(0) possibly_damaging(0.905) TCGA-FR-A7U9-06 6 29407875 29407875 C T OR10C1 Missense_Mutation p.S28F 0.29 tolerated(0.71) benign(0.048) TCGA-FR-A7U9-06 6 29408076 29408076 G A OR10C1 Missense_Mutation p.G95E 0.17 tolerated(0.06) probably_damaging(0.941) TCGA-FR-A7U9-06 6 3006713 3006713 C T NQO2 5'UTR 0.30 TCGA-FR-A7U9-06 6 30593685 30593685 C T MRPS18B 3'UTR 0.30 TCGA-FR-A7U9-06 6 30709926 30709926 G A FLOT1 Missense_Mutation p.S14F 0.19 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 6 30954293 30954293 C T MUC21 Missense_Mutation p.S114F 0.16 deleterious(0.01) unknown(0) TCGA-FR-A7U9-06 6 31541476 31541476 G A LTA 3'UTR 0.26 TCGA-FR-A7U9-06 6 31677939 31677939 C T LY6G6F Silent p.V261V 0.21 TCGA-FR-A7U9-06 6 31731877 31731877 C T SAPCD1 Missense_Mutation p.P98S 0.13 tolerated(0.6) benign(0.06) TCGA-FR-A7U9-06 6 31731878 31731878 C T SAPCD1 Missense_Mutation p.P98L 0.13 tolerated(0.58) benign(0.019) TCGA-FR-A7U9-06 6 31827632 31827632 G A NEU1 Missense_Mutation p.S371L 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 6 31931709 31931709 C T SKIV2L Missense_Mutation p.S556F 0.23 deleterious(0.02) possibly_damaging(0.705) TCGA-FR-A7U9-06 6 31940120 31940120 G A STK19 Missense_Mutation p.E88K 0.13 tolerated_low_confidence(0.14) benign(0.091) TCGA-FR-A7U9-06 6 32038157 32038157 G A TNXB Silent p.P1675P 0.19 TCGA-FR-A7U9-06 6 32041726 32041726 G A RNA5SP206 3'Flank 0.42 TCGA-FR-A7U9-06 6 32170316 32170316 G A NOTCH4 Missense_Mutation p.H1098Y 0.20 deleterious(0) possibly_damaging(0.72) TCGA-FR-A7U9-06 6 32170317 32170317 G A NOTCH4 Silent p.H1097H 0.20 TCGA-FR-A7U9-06 6 32181942 32181942 C T NOTCH4 Silent p.G704G 0.15 TCGA-FR-A7U9-06 6 33385422 33385422 G A CUTA Silent p.A50A 0.17 TCGA-FR-A7U9-06 6 34004069 34004069 C T GRM4 Silent p.V606V 0.21 TCGA-FR-A7U9-06 6 35716580 35716580 C T ARMC12 Missense_Mutation p.P346L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.76) TCGA-FR-A7U9-06 6 35762838 35762838 G A CLPS 3'UTR 0.21 TCGA-FR-A7U9-06 6 36976697 36976697 G A FGD2 Silent p.R52R 0.19 TCGA-FR-A7U9-06 6 36981412 36981412 G A FGD2 Silent p.V185V 0.16 TCGA-FR-A7U9-06 6 36981413 36981413 A C FGD2 Missense_Mutation p.I186L 0.16 tolerated(1) benign(0.116) TCGA-FR-A7U9-06 6 38835853 38835853 G A DNAH8 Missense_Mutation p.G2020R 0.26 probably_damaging(1) TCGA-FR-A7U9-06 6 38893972 38893972 G C DNAH8 Missense_Mutation p.E3485Q 0.19 benign(0.431) TCGA-FR-A7U9-06 6 38976722 38976722 C T DNAH8 Silent p.L4232L 0.20 TCGA-FR-A7U9-06 6 41243964 41243964 G A TREM1 Missense_Mutation p.P202S 0.16 tolerated(1) benign(0.009) TCGA-FR-A7U9-06 6 42797827 42797827 C T GLTSCR1L Missense_Mutation p.R586C 0.26 deleterious(0) benign(0.135) TCGA-FR-A7U9-06 6 43155007 43155007 C T CUL9 Missense_Mutation p.P471S 0.19 deleterious(0.01) benign(0.045) TCGA-FR-A7U9-06 6 46761432 46761432 G A MEP1A Missense_Mutation p.D42N 0.14 deleterious(0.02) possibly_damaging(0.694) TCGA-FR-A7U9-06 6 46803212 46803212 C T MEP1A Silent p.F670F 0.41 TCGA-FR-A7U9-06 6 46995491 46995491 C T GPR110 Missense_Mutation p.D26N 0.19 tolerated(0.19) benign(0.003) TCGA-FR-A7U9-06 6 49667590 49667590 C T CRISP2 Silent p.E66E 0.25 TCGA-FR-A7U9-06 6 50740534 50740534 C T TFAP2D Missense_Mutation p.S439L 0.14 deleterious_low_confidence(0.01) benign(0.003) TCGA-FR-A7U9-06 6 51923309 51923309 G A PKHD1 Missense_Mutation p.P442S 0.26 tolerated(0.13) benign(0.211) TCGA-FR-A7U9-06 6 54804673 54804673 G A FAM83B Missense_Mutation p.E302K 0.18 tolerated(0.15) benign(0.014) TCGA-FR-A7U9-06 6 56035777 56035777 C T COL21A1 Missense_Mutation p.D264N 0.20 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 6 57012099 57012099 G A ZNF451 Missense_Mutation p.E406K 0.16 deleterious(0.03) benign(0.254) TCGA-FR-A7U9-06 6 57017042 57017042 C T ZNF451 Missense_Mutation p.P926S 0.25 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 6 63989858 63989858 C T LGSN 3'UTR 0.11 TCGA-FR-A7U9-06 6 63989906 63989906 G A LGSN 3'UTR 0.15 TCGA-FR-A7U9-06 6 63989973 63989973 C T LGSN Missense_Mutation p.E495K 0.22 tolerated(0.16) benign(0.091) TCGA-FR-A7U9-06 6 66112497 66112497 T G EYS Missense_Mutation p.D353A 0.22 tolerated(0.19) benign(0.018) TCGA-FR-A7U9-06 6 6626593 6626593 C T LY86 Silent p.F97F 0.15 TCGA-FR-A7U9-06 6 69723974 69723974 G A BAI3 Silent p.K658K 0.22 TCGA-FR-A7U9-06 6 70408976 70408976 G A LMBRD1 Missense_Mutation p.P433S 0.26 deleterious(0) probably_damaging(0.978) TCGA-FR-A7U9-06 6 70408977 70408977 A C LMBRD1 Silent p.A432A 0.28 TCGA-FR-A7U9-06 6 70778320 70778320 C T COL19A1 Silent p.S392S 0.24 TCGA-FR-A7U9-06 6 70881893 70881893 G A COL19A1 Missense_Mutation p.G869E 0.27 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 6 73108741 73108741 C T RIMS1 Missense_Mutation p.P1602L 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 6 7578057 7578057 C T DSP Silent p.L975L 0.16 TCGA-FR-A7U9-06 6 75847244 75847244 C T COL12A1 Missense_Mutation p.S1768N 0.08 probably_damaging(0.996) TCGA-FR-A7U9-06 6 75994506 75994506 G A TMEM30A 5'UTR 0.27 TCGA-FR-A7U9-06 6 76421092 76421092 G A SENP6 Missense_Mutation p.E957K 0.19 deleterious(0.05) probably_damaging(0.984) TCGA-FR-A7U9-06 6 88126407 88126407 C T C6ORF165 Missense_Mutation p.P165S 0.23 deleterious(0) probably_damaging(0.925) TCGA-FR-A7U9-06 6 90468045 90468045 G A MDN1 Silent p.F877F 0.33 TCGA-FR-A7U9-06 6 96651399 96651399 A G FUT9 Missense_Mutation p.Q123R 0.23 tolerated(0.57) benign(0.216) TCGA-FR-A7U9-06 6 99856112 99856112 G A PNISR Missense_Mutation p.R237C 0.13 tolerated(0.06) benign(0.246) TCGA-FR-A7U9-06 7 100187587 100187587 C T FBXO24 Intron 0.25 TCGA-FR-A7U9-06 7 100198545 100198545 C T FBXO24 3'UTR 0.40 TCGA-FR-A7U9-06 7 100285703 100285703 C T GIGYF1 Silent p.V22V 0.37 TCGA-FR-A7U9-06 7 100334946 100334946 C T ZAN Missense_Mutation p.S196F 0.20 probably_damaging(0.996) TCGA-FR-A7U9-06 7 100348433 100348433 C T ZAN Missense_Mutation p.P479S 0.22 benign(0.181) TCGA-FR-A7U9-06 7 100348483 100348483 C T ZAN Silent p.S495S 0.35 TCGA-FR-A7U9-06 7 100364792 100364792 G A ZAN Missense_Mutation p.G1591E 0.35 unknown(0) TCGA-FR-A7U9-06 7 100456701 100456701 C T SLC12A9 Missense_Mutation p.P299S 0.18 deleterious(0) probably_damaging(0.989) TCGA-FR-A7U9-06 7 100552193 100552193 C T MUC3A Missense_Mutation p.S315F 0.11 deleterious(0.04) probably_damaging(0.969) TCGA-FR-A7U9-06 7 100675545 100675545 G A MUC17 Missense_Mutation p.S283N 0.30 benign(0.341) TCGA-FR-A7U9-06 7 100678700 100678700 G A MUC17 Missense_Mutation p.G1335R 0.27 unknown(0) TCGA-FR-A7U9-06 7 100686128 100686128 G A MUC17 Missense_Mutation p.E3811K 0.13 benign(0.001) TCGA-FR-A7U9-06 7 100732537 100732537 C T TRIM56 Silent p.F648F 0.33 TCGA-FR-A7U9-06 7 103214579 103214579 T A RELN Missense_Mutation p.R1491W 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 7 103234184 103234184 C T RELN Missense_Mutation p.R1286Q 0.15 tolerated(0.06) probably_damaging(0.992) TCGA-FR-A7U9-06 7 103276911 103276911 C T RELN Missense_Mutation p.D692N 0.50 deleterious(0) benign(0.26) TCGA-FR-A7U9-06 7 106523592 106523592 C T PIK3CG Missense_Mutation p.S915F 0.26 tolerated(0.06) benign(0.018) TCGA-FR-A7U9-06 7 107253834 107253834 C T BCAP29 Missense_Mutation p.S216L 0.31 deleterious(0.01) possibly_damaging(0.752) TCGA-FR-A7U9-06 7 107414536 107414536 C T SLC26A3 Silent p.Q612Q 0.26 TCGA-FR-A7U9-06 7 107696112 107696112 T A LAMB4 Missense_Mutation p.K1240N 0.34 tolerated(0.2) benign(0.209) TCGA-FR-A7U9-06 7 113558502 113558502 C T PPP1R3A Missense_Mutation p.E184K 0.13 deleterious(0.03) benign(0.292) TCGA-FR-A7U9-06 7 114329856 114329856 G A FOXP2 Missense_Mutation p.E700K 0.12 deleterious(0) benign(0.02) TCGA-FR-A7U9-06 7 115581955 115581955 G A TFEC Missense_Mutation p.R219W 0.19 deleterious(0) probably_damaging(0.959) TCGA-FR-A7U9-06 7 116436167 116436167 G A MET Missense_Mutation p.E1406K 0.28 deleterious_low_confidence(0) unknown(0) TCGA-FR-A7U9-06 7 116810930 116810930 C T ST7 Silent p.F326F 0.27 TCGA-FR-A7U9-06 7 117144412 117144412 G A CFTR Silent p.L53L 0.18 TCGA-FR-A7U9-06 7 117251691 117251691 C T CFTR Missense_Mutation p.R1066C 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 7 117431731 117431731 G A CTTNBP2 Missense_Mutation p.P507S 0.20 tolerated(0.12) benign(0.005) TCGA-FR-A7U9-06 7 121651877 121651877 C A PTPRZ1 Missense_Mutation p.P926H 0.18 tolerated_low_confidence(0.2) possibly_damaging(0.599) TCGA-FR-A7U9-06 7 122001003 122001003 G A CADPS2 Missense_Mutation p.S1151L 0.22 deleterious(0.01) benign(0.275) TCGA-FR-A7U9-06 7 123143418 123143418 C T IQUB Splice_Site p.X178_splice 0.18 TCGA-FR-A7U9-06 7 126086347 126086347 T C GRM8 Missense_Mutation p.K837R 0.38 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 7 128441270 128441270 C T CCDC136 Missense_Mutation p.S126F 0.09 deleterious(0) probably_damaging(0.967) TCGA-FR-A7U9-06 7 128619087 128619087 G A TNPO3 Missense_Mutation p.R671C 0.26 deleterious(0) probably_damaging(0.995) TCGA-FR-A7U9-06 7 129122857 129122857 C T STRIP2 Missense_Mutation p.R742C 0.31 deleterious(0) probably_damaging(0.996) TCGA-FR-A7U9-06 7 131815102 131815102 G A PLXNA4 3'UTR 0.50 TCGA-FR-A7U9-06 7 131866947 131866947 C T PLXNA4 Missense_Mutation p.G1054E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 7 136699732 136699732 G A CHRM2 Silent p.G40G 0.16 TCGA-FR-A7U9-06 7 136938289 136938289 G T PTN Silent p.R71R 0.34 TCGA-FR-A7U9-06 7 137075914 137075914 G A DGKI 3'UTR 0.14 TCGA-FR-A7U9-06 7 137761314 137761314 G A AKR1D1 Missense_Mutation p.S17N 0.20 tolerated(0.13) benign(0.004) TCGA-FR-A7U9-06 7 137776594 137776594 G A AKR1D1 Silent p.V114V 0.24 TCGA-FR-A7U9-06 7 138522692 138522692 G A KIAA1549 Missense_Mutation p.L1938F 0.19 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 7 140221731 140221731 G A DENND2A Silent p.F945F 0.18 TCGA-FR-A7U9-06 7 141619130 141619130 G A OR9A4 Missense_Mutation p.G152E 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.22 TCGA-FR-A7U9-06 7 141673474 141673474 G A TAS2R38 Missense_Mutation p.R6C 0.27 deleterious_low_confidence(0) benign(0.083) TCGA-FR-A7U9-06 7 142206726 142206726 G A TRBV10-2 Silent p.H43H 0.17 TCGA-FR-A7U9-06 7 142250766 142250766 G A TRBV6-4 Missense_Mutation p.P94L 0.25 tolerated(0.22) benign(0.031) TCGA-FR-A7U9-06 7 142250927 142250927 C T TRBV6-4 Silent p.L40L 0.28 TCGA-FR-A7U9-06 7 142326834 142326834 G A TRBV19 Silent p.Q44Q 0.23 TCGA-FR-A7U9-06 7 142334729 142334729 C T TRBV20-1 Missense_Mutation p.R51C 0.20 deleterious(0.04) possibly_damaging(0.862) TCGA-FR-A7U9-06 7 142448444 142448444 C T TRBV29-1 Missense_Mutation p.S13F 0.30 deleterious(0.01) unknown(0) TCGA-FR-A7U9-06 7 142460771 142460771 C T PRSS1 Missense_Mutation p.S215F 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 7 142750037 142750037 G A OR6V1 Missense_Mutation p.M200I 0.20 tolerated(0.23) benign(0.086) TCGA-FR-A7U9-06 7 142750082 142750082 C T OR6V1 Silent p.S215S 0.19 TCGA-FR-A7U9-06 7 143792581 143792581 C T OR2A12 Silent p.H127H 0.28 TCGA-FR-A7U9-06 7 143929691 143929691 C T OR2A42 Silent p.A82A 0.36 TCGA-FR-A7U9-06 7 143956491 143956491 C A OR2A7 Silent p.V77V 0.14 TCGA-FR-A7U9-06 7 148801719 148801719 G A ZNF425 Missense_Mutation p.S415L 0.23 tolerated(0.15) benign(0.227) TCGA-FR-A7U9-06 7 149129883 149129883 C T ZNF777 Missense_Mutation p.E494K 0.23 tolerated(0.31) benign(0.108) TCGA-FR-A7U9-06 7 149521615 149521615 C T SSPO RNA 0.30 TCGA-FR-A7U9-06 7 149992427 149992427 G A ACTR3C 5'UTR 0.16 TCGA-FR-A7U9-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.23 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 7 150645618 150645618 G A KCNH2 Missense_Mutation p.P869L 0.13 tolerated(0.29) benign(0.31) TCGA-FR-A7U9-06 7 150753681 150753681 G A CDK5 Missense_Mutation p.P100S 0.09 tolerated(0.24) benign(0.012) TCGA-FR-A7U9-06 7 155604555 155604555 C T SHH Missense_Mutation p.D88N 0.15 deleterious(0) possibly_damaging(0.652) TCGA-FR-A7U9-06 7 156971427 156971427 C T UBE3C Missense_Mutation p.P168S 0.19 deleterious(0.04) probably_damaging(0.927) TCGA-FR-A7U9-06 7 16685236 16685236 G A ANKMY2 5'UTR 0.20 TCGA-FR-A7U9-06 7 18067202 18067202 C T PRPS1L1 Missense_Mutation p.M68I 0.29 deleterious(0.01) benign(0.311) TCGA-FR-A7U9-06 7 21856256 21856256 G A DNAH11 Missense_Mutation p.G3509R 0.23 probably_damaging(0.995) TCGA-FR-A7U9-06 7 21857880 21857880 C T DNAH11 Silent p.I3545I 0.20 TCGA-FR-A7U9-06 7 22175681 22175681 G A RAPGEF5 Silent p.I644I 0.22 TCGA-FR-A7U9-06 7 23871908 23871908 G A STK31 Missense_Mutation p.E995K 0.17 tolerated_low_confidence(0.2) benign(0.004) TCGA-FR-A7U9-06 7 2752495 2752495 G A AMZ1 Missense_Mutation p.D494N 0.32 tolerated_low_confidence(0.48) benign(0.037) TCGA-FR-A7U9-06 7 31146119 31146119 G A ADCYAP1R1 Missense_Mutation p.E438K 0.11 deleterious(0) possibly_damaging(0.507) TCGA-FR-A7U9-06 7 31829774 31829774 G A PDE1C Intron 0.35 TCGA-FR-A7U9-06 7 31855660 31855660 G A PDE1C Missense_Mutation p.A624V 0.29 tolerated_low_confidence(0.17) benign(0.034) TCGA-FR-A7U9-06 7 35244133 35244133 C T TBX20 Missense_Mutation p.G318R 0.20 deleterious(0.01) benign(0.002) TCGA-FR-A7U9-06 7 36194769 36194769 C T EEPD1 Missense_Mutation p.P279L 0.25 deleterious(0) probably_damaging(0.951) TCGA-FR-A7U9-06 7 36366482 36366482 C T KIAA0895 Missense_Mutation p.E484K 0.37 deleterious(0.05) probably_damaging(0.992) TCGA-FR-A7U9-06 7 37382273 37382273 C T ELMO1 Missense_Mutation p.V8I 0.27 deleterious(0.03) benign(0.083) TCGA-FR-A7U9-06 7 37890317 37890317 G A NME8 Missense_Mutation p.E60K 0.26 deleterious(0.04) possibly_damaging(0.477) TCGA-FR-A7U9-06 7 38402466 38402466 C T TRGV2 Missense_Mutation p.G118E 0.15 deleterious_low_confidence(0.03) benign(0.274) TCGA-FR-A7U9-06 7 38431504 38431504 G A AMPH Missense_Mutation p.P575S 0.13 tolerated(0.43) benign(0.009) TCGA-FR-A7U9-06 7 42012041 42012041 G A GLI3 Silent p.G666G 0.23 TCGA-FR-A7U9-06 7 4218196 4218196 G A SDK1 Silent p.V1692V 0.26 TCGA-FR-A7U9-06 7 42959231 42959231 G A PSMA2 Intron 0.27 TCGA-FR-A7U9-06 7 43495948 43495948 G A HECW1 Silent p.V851V 0.23 TCGA-FR-A7U9-06 7 44186154 44186154 G A GCK Silent p.L310L 0.24 TCGA-FR-A7U9-06 7 44524857 44524857 G A NUDCD3 Silent p.A73A 0.17 TCGA-FR-A7U9-06 7 44579284 44579284 C T NPC1L1 Missense_Mutation p.E238K 0.26 tolerated(0.22) benign(0.009) TCGA-FR-A7U9-06 7 44747501 44747501 C G OGDH Missense_Mutation p.A992G 0.32 tolerated(0.06) benign(0.016) TCGA-FR-A7U9-06 7 45717791 45717791 C T ADCY1 Silent p.F609F 0.39 TCGA-FR-A7U9-06 7 45724628 45724628 C T ADCY1 Silent p.F678F 0.21 TCGA-FR-A7U9-06 7 47898410 47898410 G A PKD1L1 Missense_Mutation p.P1408L 0.28 tolerated(0.09) benign(0.001) TCGA-FR-A7U9-06 7 50367317 50367317 G A IKZF1 Missense_Mutation p.G42R 0.18 deleterious(0.02) possibly_damaging(0.715) TCGA-FR-A7U9-06 7 50367318 50367318 G A IKZF1 Missense_Mutation p.G42E 0.19 deleterious(0.02) possibly_damaging(0.549) TCGA-FR-A7U9-06 7 55886860 55886860 C T SEPT14 Silent p.R259R 0.33 TCGA-FR-A7U9-06 7 56049925 56049925 A G GBAS Silent p.G132G 0.29 TCGA-FR-A7U9-06 7 57187668 57187668 C T ZNF479 Missense_Mutation p.R485K 0.39 tolerated(1) benign(0.079) TCGA-FR-A7U9-06 7 57188544 57188544 G A ZNF479 Missense_Mutation p.S193L 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A7U9-06 7 6088449 6088449 G A EIF2AK1 Silent p.I146I 0.21 TCGA-FR-A7U9-06 7 64169484 64169484 C T ZNF107 3'UTR 0.27 TCGA-FR-A7U9-06 7 6624862 6624862 C T ZDHHC4 Missense_Mutation p.H238Y 0.23 deleterious(0) possibly_damaging(0.566) TCGA-FR-A7U9-06 7 73753212 73753212 C T CLIP2 Missense_Mutation p.P186S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A7U9-06 7 73949447 73949447 T C GTF2IRD1 Missense_Mutation p.F459L 0.22 tolerated(0.09) benign(0.001) TCGA-FR-A7U9-06 7 73969747 73969747 C T GTF2IRD1 Intron 0.17 TCGA-FR-A7U9-06 7 75053355 75053355 G A POM121C Missense_Mutation p.P342L 0.17 deleterious(0.04) benign(0.058) TCGA-FR-A7U9-06 7 77762313 77762313 G A MAGI2 Silent p.P1032P 0.33 TCGA-FR-A7U9-06 7 794225 794225 G A HEATR2 Splice_Site p.X342_splice 0.20 TCGA-FR-A7U9-06 7 80427543 80427543 G A SEMA3C Silent p.F332F 0.26 TCGA-FR-A7U9-06 7 82538303 82538303 C T PCLO Missense_Mutation p.D4443N 0.26 unknown(0) TCGA-FR-A7U9-06 7 82544205 82544205 G A PCLO Missense_Mutation p.P4366L 0.28 unknown(0) TCGA-FR-A7U9-06 7 82544683 82544683 G A PCLO Nonsense_Mutation p.Q4207* 0.19 TCGA-FR-A7U9-06 7 82544971 82544971 C T PCLO Missense_Mutation p.E4111K 0.34 unknown(0) TCGA-FR-A7U9-06 7 82545982 82545982 C T PCLO Missense_Mutation p.E3774K 0.13 unknown(0) TCGA-FR-A7U9-06 7 82582173 82582173 G A PCLO Missense_Mutation p.P2699L 0.11 unknown(0) TCGA-FR-A7U9-06 7 82764387 82764387 C T PCLO Missense_Mutation p.D827N 0.29 unknown(0) TCGA-FR-A7U9-06 7 82764501 82764501 C T PCLO Missense_Mutation p.E789K 0.32 unknown(0) TCGA-FR-A7U9-06 7 86415990 86415990 C T GRM3 Silent p.S294S 0.17 TCGA-FR-A7U9-06 7 92120681 92120681 C T PEX1 Missense_Mutation p.E1115K 0.19 tolerated(0.07) benign(0.149) TCGA-FR-A7U9-06 7 92761298 92761298 C T SAMD9L Silent p.R1329R 0.23 TCGA-FR-A7U9-06 7 92762472 92762472 G A SAMD9L Missense_Mutation p.S938L 0.30 deleterious(0) possibly_damaging(0.749) TCGA-FR-A7U9-06 7 92764248 92764248 C T SAMD9L Missense_Mutation p.G346E 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 7 94038683 94038683 C T COL1A2 Missense_Mutation p.P281L 0.15 unknown(0) TCGA-FR-A7U9-06 7 96303046 96303046 A C SHFM1 3'UTR 0.33 TCGA-FR-A7U9-06 7 96639149 96639149 A T DLX6 Missense_Mutation p.K224N 0.18 deleterious(0) probably_damaging(0.998) TCGA-FR-A7U9-06 7 97822982 97822982 C T LMTK2 Missense_Mutation p.P1069S 0.11 tolerated(0.26) benign(0.011) TCGA-FR-A7U9-06 7 98256614 98256614 C T NPTX2 Silent p.H342H 0.33 TCGA-FR-A7U9-06 7 99696221 99696221 C T MCM7 Missense_Mutation p.E234K 0.32 deleterious(0) probably_damaging(0.991) TCGA-FR-A7U9-06 7 99696222 99696222 C T MCM7 Silent p.Q233Q 0.34 TCGA-FR-A7U9-06 7 99711683 99711683 G A TAF6 Silent p.I87I 0.38 TCGA-FR-A7U9-06 8 100789115 100789115 C G VPS13B Missense_Mutation p.L2479V 0.27 tolerated(0.6) possibly_damaging(0.636) TCGA-FR-A7U9-06 8 100830758 100830758 G A VPS13B Missense_Mutation p.R2839Q 0.20 deleterious(0.02) benign(0.238) TCGA-FR-A7U9-06 8 102565003 102565003 G A GRHL2 Missense_Mutation p.E93K 0.22 tolerated(0.66) benign(0.033) TCGA-FR-A7U9-06 8 10583504 10583504 G A SOX7 Missense_Mutation p.S356F 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A7U9-06 8 10584061 10584061 C T SOX7 Silent p.R170R 0.09 TCGA-FR-A7U9-06 8 107719119 107719119 C T OXR1 Missense_Mutation p.S458L 0.36 tolerated(0.2) benign(0.004) TCGA-FR-A7U9-06 8 110457178 110457178 C T PKHD1L1 Missense_Mutation p.L1694F 0.27 tolerated(0.77) benign(0.008) TCGA-FR-A7U9-06 8 110539207 110539207 G A PKHD1L1 Missense_Mutation p.E4227K 0.25 deleterious_low_confidence(0.01) benign(0.321) TCGA-FR-A7U9-06 8 11281975 11281975 G A FAM167A Silent p.S184S 0.22 TCGA-FR-A7U9-06 8 113275929 113275929 G A CSMD3 Silent p.F3267F 0.39 TCGA-FR-A7U9-06 8 113276020 113276020 G A CSMD3 Missense_Mutation p.P3237L 0.16 tolerated(0.08) probably_damaging(0.978) TCGA-FR-A7U9-06 8 120118434 120118434 C T COLEC10 3'UTR 0.25 TCGA-FR-A7U9-06 8 121174668 121174668 G A COL14A1 Missense_Mutation p.G70E 0.17 tolerated(0.12) benign(0.12) TCGA-FR-A7U9-06 8 121290738 121290738 C T COL14A1 Silent p.I1134I 0.21 TCGA-FR-A7U9-06 8 123965317 123965317 C T ZHX2 Missense_Mutation p.H523Y 0.40 deleterious(0.04) benign(0.153) TCGA-FR-A7U9-06 8 125499454 125499454 C T RNF139 Missense_Mutation p.R522C 0.17 deleterious(0) probably_damaging(0.991) TCGA-FR-A7U9-06 8 135669858 135669858 G A ZFAT Missense_Mutation p.P48S 0.24 deleterious(0.05) benign(0.388) TCGA-FR-A7U9-06 8 139160782 139160782 G A FAM135B Silent p.V1143V 0.15 TCGA-FR-A7U9-06 8 139180259 139180259 G A FAM135B Silent p.I379I 0.22 TCGA-FR-A7U9-06 8 139697511 139697511 C T COL22A1 Silent p.R969R 0.28 TCGA-FR-A7U9-06 8 141297776 141297776 C T TRAPPC9 Missense_Mutation p.A736T 0.27 tolerated(0.16) probably_damaging(0.991) TCGA-FR-A7U9-06 8 141297777 141297777 C T TRAPPC9 Silent p.P735P 0.27 TCGA-FR-A7U9-06 8 141874482 141874482 G A PTK2 Missense_Mutation p.R127C 0.18 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 8 142200400 142200400 G A DENND3 Missense_Mutation p.S1008N 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 8 142432364 142432364 C T PTP4A3 Silent p.A8A 0.19 TCGA-FR-A7U9-06 8 144239685 144239685 G A LY6H Silent p.L156L 0.31 TCGA-FR-A7U9-06 8 144241617 144241617 C G LY6H Intron 0.40 TCGA-FR-A7U9-06 8 144241619 144241619 C T LY6H 5'UTR 0.40 TCGA-FR-A7U9-06 8 144732307 144732307 C T ZNF623 Nonsense_Mutation p.Q89* 0.32 TCGA-FR-A7U9-06 8 144940530 144940530 C T EPPK1 Missense_Mutation p.E2298K 0.04 benign(0.373) TCGA-FR-A7U9-06 8 146157687 146157687 G A ZNF16 Silent p.F162F 0.31 TCGA-FR-A7U9-06 8 17500321 17500321 G A PDGFRL 3'UTR 0.07 TCGA-FR-A7U9-06 8 2040207 2040207 C T MYOM2 Missense_Mutation p.S621F 0.11 tolerated(0.15) possibly_damaging(0.836) TCGA-FR-A7U9-06 8 22472465 22472465 C T CCAR2 Missense_Mutation p.R386C 0.57 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 8 22548084 22548084 G A EGR3 Missense_Mutation p.L356F 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A7U9-06 8 23056901 23056901 C T TNFRSF10A Missense_Mutation p.E298K 0.39 tolerated(0.19) benign(0.288) TCGA-FR-A7U9-06 8 23225805 23225805 G A LOXL2 Silent p.S20S 0.22 TCGA-FR-A7U9-06 8 25193802 25193802 C A DOCK5 Missense_Mutation p.S747Y 0.26 deleterious(0.02) benign(0.281) TCGA-FR-A7U9-06 8 25226131 25226131 C T DOCK5 Silent p.L1110L 0.32 TCGA-FR-A7U9-06 8 27327283 27327283 C T CHRNA2 Missense_Mutation p.D97N 0.24 tolerated(0.2) probably_damaging(0.986) TCGA-FR-A7U9-06 8 27779539 27779539 C T SCARA5 Silent p.G155G 0.50 TCGA-FR-A7U9-06 8 2836216 2836216 C T CSMD1 Silent p.K2828K 0.29 TCGA-FR-A7U9-06 8 29195818 29195818 C T DUSP4 Missense_Mutation p.M260I 0.21 tolerated(0.14) benign(0.003) TCGA-FR-A7U9-06 8 30620815 30620815 C T UBXN8 RNA 0.16 TCGA-FR-A7U9-06 8 37687531 37687531 C T GPR124 Silent p.C239C 0.27 TCGA-FR-A7U9-06 8 39027441 39027441 G A ADAM32 Missense_Mutation p.M280I 0.18 deleterious(0) benign(0.006) TCGA-FR-A7U9-06 8 39468145 39468145 C T ADAM18 Missense_Mutation p.P148S 0.18 tolerated(0.48) benign(0.079) TCGA-FR-A7U9-06 8 39564419 39564419 A T ADAM18 Missense_Mutation p.K671N 0.25 deleterious(0.04) possibly_damaging(0.798) TCGA-FR-A7U9-06 8 40389740 40389740 C T ZMAT4 3'UTR 0.25 TCGA-FR-A7U9-06 8 41519372 41519372 C T ANK1 Intron 0.25 TCGA-FR-A7U9-06 8 41552197 41552197 C T ANK1 Silent p.G1121G 0.28 TCGA-FR-A7U9-06 8 41552198 41552198 C T ANK1 Missense_Mutation p.G1121E 0.28 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 8 52384767 52384767 C G PXDNL Missense_Mutation p.E264D 0.21 tolerated(0.2) benign(0.049) TCGA-FR-A7U9-06 8 53092790 53092790 G A ST18 Silent p.L57L 0.18 TCGA-FR-A7U9-06 8 53571452 53571452 C T RB1CC1 Missense_Mutation p.E592K 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-FR-A7U9-06 8 53571453 53571453 C T RB1CC1 Silent p.S591S 0.36 TCGA-FR-A7U9-06 8 54708221 54708221 G A ATP6V1H Missense_Mutation p.L286F 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 8 54866663 54866663 C T RGS20 Silent p.N257N 0.32 TCGA-FR-A7U9-06 8 55060256 55060256 C T MRPL15 Missense_Mutation p.L290F 0.25 deleterious(0.04) benign(0.103) TCGA-FR-A7U9-06 8 55537526 55537526 G A RP1 Missense_Mutation p.D362N 0.43 tolerated(0.21) benign(0.006) TCGA-FR-A7U9-06 8 55539859 55539859 G A RP1 Silent p.K1139K 0.31 TCGA-FR-A7U9-06 8 55540830 55540830 C T RP1 Missense_Mutation p.S1463L 0.14 tolerated(0.08) benign(0.372) TCGA-FR-A7U9-06 8 56698314 56698314 C T TGS1 Missense_Mutation p.S68F 0.28 tolerated(0.08) benign(0.031) TCGA-FR-A7U9-06 8 614604 614604 T C ERICH1 Silent p.%3D 0.30 TCGA-FR-A7U9-06 8 63492222 63492222 G A NKAIN3 Missense_Mutation p.R60Q 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A7U9-06 8 67066540 67066540 G A TRIM55 Missense_Mutation p.E499K 0.17 deleterious_low_confidence(0.01) benign(0.146) TCGA-FR-A7U9-06 8 6794304 6794304 G A DEFA4 Nonsense_Mutation p.Q40* 0.17 TCGA-FR-A7U9-06 8 68346403 68346403 T A CPA6 Missense_Mutation p.K304M 0.20 deleterious(0) probably_damaging(0.986) TCGA-FR-A7U9-06 8 68430241 68430241 C T CPA6 Silent p.E78E 0.33 TCGA-FR-A7U9-06 8 68950469 68950469 C T PREX2 Nonsense_Mutation p.Q261* 0.20 TCGA-FR-A7U9-06 8 72234093 72234093 G A EYA1 Silent p.L98L 0.18 TCGA-FR-A7U9-06 8 73479902 73479902 A G KCNB2 5'UTR 0.29 TCGA-FR-A7U9-06 8 73480025 73480025 C T KCNB2 Missense_Mutation p.S19F 0.26 deleterious(0) probably_damaging(0.923) TCGA-FR-A7U9-06 8 73480026 73480026 C T KCNB2 Silent p.S19S 0.26 TCGA-FR-A7U9-06 8 73480219 73480219 G A KCNB2 Missense_Mutation p.E84K 0.16 tolerated(0.19) benign(0.009) TCGA-FR-A7U9-06 8 73849364 73849364 G A KCNB2 Missense_Mutation p.E592K 0.34 tolerated_low_confidence(0.14) benign(0.037) TCGA-FR-A7U9-06 8 73849980 73849980 C T KCNB2 Missense_Mutation p.S797F 0.28 deleterious_low_confidence(0.04) benign(0.396) TCGA-FR-A7U9-06 8 73849981 73849981 T A KCNB2 Silent p.S797S 0.28 TCGA-FR-A7U9-06 8 73982078 73982078 C T SBSPON Silent p.V213V 0.12 TCGA-FR-A7U9-06 8 75262730 75262730 C T GDAP1 Missense_Mutation p.P12S 0.11 tolerated_low_confidence(0.81) benign(0) TCGA-FR-A7U9-06 8 76470753 76470753 G A HNF4G Missense_Mutation p.G235E 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-FR-A7U9-06 8 77768108 77768108 A T ZFHX4 Missense_Mutation p.E2984V 0.24 probably_damaging(0.99) TCGA-FR-A7U9-06 8 77775841 77775841 T G ZFHX4 Missense_Mutation p.F3297L 0.21 probably_damaging(0.961) TCGA-FR-A7U9-06 8 8185909 8185909 G A SGK223 Missense_Mutation p.P795S 0.35 probably_damaging(0.915) TCGA-FR-A7U9-06 8 86356260 86356260 C T CA3 Intron 0.11 TCGA-FR-A7U9-06 8 87226628 87226628 T G SLC7A13 3'UTR 0.24 TCGA-FR-A7U9-06 8 88365945 88365945 C T CNBD1 Missense_Mutation p.P412S 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 8 91078204 91078204 C T CALB1 Splice_Site p.X125_splice 0.29 TCGA-FR-A7U9-06 8 95272629 95272629 T C GEM Missense_Mutation p.K35E 0.26 tolerated(1) benign(0.01) TCGA-FR-A7U9-06 8 95419865 95419865 C T RAD54B Missense_Mutation p.G195S 0.23 tolerated(0.34) benign(0.181) TCGA-FR-A7U9-06 9 101125021 101125021 C T GABBR2 Silent p.R623R 0.14 TCGA-FR-A7U9-06 9 101900276 101900276 G A TGFBR1 Missense_Mutation p.R237K 0.21 deleterious(0) probably_damaging(0.953) TCGA-FR-A7U9-06 9 104133684 104133684 C T BAAT Translation_Start_Site p.M1? 0.22 deleterious(0) possibly_damaging(0.903) TCGA-FR-A7U9-06 9 104192223 104192223 C T ALDOB Silent p.R46R 0.19 TCGA-FR-A7U9-06 9 104302786 104302786 C T RNF20 Silent p.I104I 0.22 TCGA-FR-A7U9-06 9 107266610 107266610 G A OR13F1 Missense_Mutation p.V23I 0.28 tolerated(0.07) benign(0.01) TCGA-FR-A7U9-06 9 107360965 107360965 G A OR13C5 Missense_Mutation p.R244C 0.13 deleterious(0) benign(0.05) TCGA-FR-A7U9-06 9 107379613 107379613 C T OR13C9 Missense_Mutation p.M291I 0.24 deleterious(0.01) benign(0.001) TCGA-FR-A7U9-06 9 107380393 107380393 G A OR13C9 Silent p.I31I 0.25 TCGA-FR-A7U9-06 9 111962547 111962547 G A EPB41L4B Nonsense_Mutation p.R672* 0.16 TCGA-FR-A7U9-06 9 112963604 112963604 G A C9orf152 Missense_Mutation p.S115F 0.20 deleterious(0) probably_damaging(0.983) TCGA-FR-A7U9-06 9 113217927 113217927 C T SVEP1 Missense_Mutation p.G1244R 0.23 probably_damaging(0.998) TCGA-FR-A7U9-06 9 113221254 113221254 G A SVEP1 Silent p.S1154S 0.26 TCGA-FR-A7U9-06 9 113242016 113242016 C T SVEP1 Missense_Mutation p.G796R 0.25 probably_damaging(1) TCGA-FR-A7U9-06 9 113704433 113704433 C T LPAR1 Missense_Mutation p.E21K 0.24 deleterious(0.05) benign(0.026) TCGA-FR-A7U9-06 9 114090057 114090057 G A OR2K2 Silent p.F219F 0.24 TCGA-FR-A7U9-06 9 118982355 118982355 G A PAPPA Silent p.T686T 0.20 TCGA-FR-A7U9-06 9 119097266 119097266 G A PAPPA Missense_Mutation p.G1175E 0.15 deleterious(0) probably_damaging(0.931) TCGA-FR-A7U9-06 9 119461858 119461858 C T TRIM32 Nonsense_Mutation p.R613* 0.28 TCGA-FR-A7U9-06 9 119770383 119770383 C T ASTN2 Missense_Mutation p.D476N 0.10 deleterious(0) unknown(0) TCGA-FR-A7U9-06 9 119976926 119976926 C T ASTN2 Silent p.K242K 0.11 TCGA-FR-A7U9-06 9 120475362 120475362 C A TLR4 Missense_Mutation p.T319N 0.19 tolerated(0.31) benign(0.001) TCGA-FR-A7U9-06 9 121929923 121929923 C T BRINP1 Nonsense_Mutation p.W575* 0.24 TCGA-FR-A7U9-06 9 124116909 124116909 G A STOM Missense_Mutation p.R70C 0.22 deleterious(0.03) benign(0.431) TCGA-FR-A7U9-06 9 124962242 124962242 G A MORN5 3'UTR 0.15 TCGA-FR-A7U9-06 9 125154756 125154756 C T PTGS1 Missense_Mutation p.S578F 0.29 deleterious(0) probably_damaging(0.968) TCGA-FR-A7U9-06 9 125330126 125330126 G A OR1L8 Missense_Mutation p.R211C 0.26 deleterious(0.03) benign(0.044) TCGA-FR-A7U9-06 9 125486679 125486679 G A OR1L4 Missense_Mutation p.M137I 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-FR-A7U9-06 9 125551430 125551430 G T OR5C1 Silent p.L73L 0.23 TCGA-FR-A7U9-06 9 127572453 127572453 C A OLFML2A Missense_Mutation p.S574Y 0.23 tolerated(1) possibly_damaging(0.86) TCGA-FR-A7U9-06 9 128065070 128065070 C T GAPVD1 Missense_Mutation p.P332S 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A7U9-06 9 128099563 128099563 C T GAPVD1 Missense_Mutation p.P884L 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A7U9-06 9 130493715 130493715 G A TTC16 3'UTR 0.20 TCGA-FR-A7U9-06 9 130700157 130700157 C T DPM2 5'UTR 0.32 TCGA-FR-A7U9-06 9 131554794 131554794 C T TBC1D13 Silent p.S108S 0.12 TCGA-FR-A7U9-06 9 131554795 131554795 C T TBC1D13 Missense_Mutation p.R109W 0.12 deleterious(0) possibly_damaging(0.586) TCGA-FR-A7U9-06 9 131767603 131767603 C T NUP188 Missense_Mutation p.P1511S 0.21 tolerated(0.19) benign(0.002) TCGA-FR-A7U9-06 9 135073982 135073982 C T NTNG2 Silent p.I281I 0.20 TCGA-FR-A7U9-06 9 135487625 135487625 G A DDX31 Nonsense_Mutation p.Q720* 0.19 TCGA-FR-A7U9-06 9 135772900 135772900 C T TSC1 Missense_Mutation p.R908Q 0.18 tolerated(0.09) benign(0.432) TCGA-FR-A7U9-06 9 136137548 136137548 G A ABO RNA 0.19 TCGA-FR-A7U9-06 9 136313778 136313778 A T ADAMTS13 Missense_Mutation p.E930D 0.14 tolerated(0.15) benign(0.126) TCGA-FR-A7U9-06 9 136379908 136379908 C T TMEM8C Splice_Site p.X173_splice 0.13 TCGA-FR-A7U9-06 9 136516773 136516773 G A DBH Silent p.G403G 0.21 TCGA-FR-A7U9-06 9 137777125 137777125 C T FCN2 Silent p.F114F 0.15 TCGA-FR-A7U9-06 9 139650894 139650894 G T LCN8 Intron 0.21 TCGA-FR-A7U9-06 9 139804433 139804433 T A TRAF2 Missense_Mutation p.I197N 0.15 deleterious(0) possibly_damaging(0.839) TCGA-FR-A7U9-06 9 139804434 139804434 C T TRAF2 Silent p.I197I 0.19 TCGA-FR-A7U9-06 9 140470610 140470610 G A DPH7 Silent p.I99I 0.20 TCGA-FR-A7U9-06 9 14823157 14823157 C T FREM1 Splice_Site p.X779_splice 0.18 TCGA-FR-A7U9-06 9 15695333 15695333 C T CCDC171 Missense_Mutation p.S439L 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-FR-A7U9-06 9 19785962 19785962 C T SLC24A2 Silent p.K301K 0.12 TCGA-FR-A7U9-06 9 2119528 2119528 T C SMARCA2 Missense_Mutation p.L1252P 0.19 possibly_damaging(0.766) TCGA-FR-A7U9-06 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A7U9-06 9 21974685 21974685 G A CDKN2A Missense_Mutation p.P48S 0.25 tolerated(0.19) probably_damaging(0.977) TCGA-FR-A7U9-06 9 23701505 23701505 C T ELAVL2 Silent p.T195T 0.17 TCGA-FR-A7U9-06 9 27157948 27157948 G A TEK Missense_Mutation p.G58R 0.13 tolerated(0.32) probably_damaging(0.993) TCGA-FR-A7U9-06 9 33927007 33927007 C G UBAP2 Missense_Mutation p.G815R 0.27 deleterious(0) unknown(0) TCGA-FR-A7U9-06 9 34490069 34490069 C T DNAI1 Missense_Mutation p.P150S 0.19 tolerated(0.42) benign(0.001) TCGA-FR-A7U9-06 9 35043406 35043406 G A C9orf131 Missense_Mutation p.M260I 0.25 tolerated(0.44) benign(0.114) TCGA-FR-A7U9-06 9 35449809 35449809 G A ATP8B5P RNA 0.12 TCGA-FR-A7U9-06 9 35548205 35548205 C T RUSC2 Missense_Mutation p.R563C 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A7U9-06 9 65506579 65506579 G A SPATA31A7 Silent p.V327V 0.19 TCGA-FR-A7U9-06 9 74309488 74309488 G A TMEM2 Silent p.L1211L 0.10 TCGA-FR-A7U9-06 9 75451010 75451010 G A TMC1 3'UTR 0.11 TCGA-FR-A7U9-06 9 78947512 78947512 C T PCSK5 Silent p.L1551L 0.36 TCGA-FR-A7U9-06 9 78965744 78965744 G A PCSK5 Missense_Mutation p.G1629E 0.18 deleterious(0.03) possibly_damaging(0.677) TCGA-FR-A7U9-06 9 79117216 79117216 G A GCNT1 5'UTR 0.17 TCGA-FR-A7U9-06 9 79825569 79825569 C T VPS13A Missense_Mutation p.S178F 0.22 deleterious(0) possibly_damaging(0.896) TCGA-FR-A7U9-06 9 8317819 8317819 G A PTPRD 3'UTR 0.22 TCGA-FR-A7U9-06 9 8341948 8341948 G A PTPRD Silent p.I1564I 0.30 TCGA-FR-A7U9-06 9 8404567 8404567 G A PTPRD Missense_Mutation p.H1394Y 0.16 deleterious(0.01) benign(0.007) TCGA-FR-A7U9-06 9 84532153 84532153 C T SPATA31D5P RNA 0.24 TCGA-FR-A7U9-06 9 84606077 84606077 C T SPATA31D1 Missense_Mutation p.S231F 0.19 deleterious(0) probably_damaging(0.963) TCGA-FR-A7U9-06 9 84606520 84606520 G A SPATA31D1 Missense_Mutation p.E379K 0.17 tolerated(0.05) possibly_damaging(0.707) TCGA-FR-A7U9-06 9 86894230 86894230 G A SLC28A3 Silent p.F633F 0.12 TCGA-FR-A7U9-06 9 87342819 87342819 G A NTRK2 Silent p.G368G 0.22 TCGA-FR-A7U9-06 9 88842858 88842858 C T C9orf153 Missense_Mutation p.E52K 0.24 deleterious(0.03) possibly_damaging(0.81) TCGA-FR-A7U9-06 9 94487237 94487237 C T ROR2 Silent p.A513A 0.22 TCGA-FR-A7U9-06 9 96422491 96422491 C T PHF2 Silent p.V449V 0.18 TCGA-FR-A7U9-06 X 10084535 10084535 C T WWC3 Missense_Mutation p.S351F 0.27 deleterious(0) probably_damaging(0.967) TCGA-FR-A7U9-06 X 101381853 101381853 G A TCEAL2 Silent p.K17K 0.24 TCGA-FR-A7U9-06 X 101572054 101572054 G A NXF2 Missense_Mutation p.E60K 0.19 tolerated(0.14) benign(0.086) TCGA-FR-A7U9-06 X 101572369 101572369 G A NXF2 Missense_Mutation p.M89I 0.16 tolerated(0.19) benign(0.005) TCGA-FR-A7U9-06 X 101821877 101821877 T C NXF4 RNA 0.15 TCGA-FR-A7U9-06 X 101911646 101911646 G A GPRASP1 Missense_Mutation p.M935I 0.22 tolerated(0.45) benign(0.015) TCGA-FR-A7U9-06 X 101971463 101971463 C T GPRASP2 Nonsense_Mutation p.Q556* 0.26 TCGA-FR-A7U9-06 X 102564731 102564731 A T BEX2 Silent p.V90V 0.19 TCGA-FR-A7U9-06 X 102632791 102632791 C T NGFRAP1 3'UTR 0.10 TCGA-FR-A7U9-06 X 104512201 104512201 G A IL1RAPL2 Missense_Mutation p.R225Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 X 105149332 105149332 G A NRK Missense_Mutation p.G281R 0.17 tolerated(0.11) benign(0.177) TCGA-FR-A7U9-06 X 105152792 105152792 G A NRK Missense_Mutation p.G388R 0.15 deleterious(0.03) benign(0.039) TCGA-FR-A7U9-06 X 105450410 105450410 G A MUM1L1 Missense_Mutation p.D329N 0.17 tolerated(0.37) possibly_damaging(0.73) TCGA-FR-A7U9-06 X 105876467 105876467 G A CXorf57 Missense_Mutation p.E430K 0.13 deleterious(0.02) probably_damaging(0.942) TCGA-FR-A7U9-06 X 106069267 106069267 G A TBC1D8B Missense_Mutation p.E279K 0.18 deleterious(0.02) possibly_damaging(0.677) TCGA-FR-A7U9-06 X 106114008 106114008 G A TBC1D8B Missense_Mutation p.E978K 0.17 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 X 106185275 106185275 C T MORC4 Silent p.E851E 0.31 TCGA-FR-A7U9-06 X 107037888 107037888 C T NCBP2L Silent p.G146G 0.18 TCGA-FR-A7U9-06 X 107224431 107224431 A T TEX13B Missense_Mutation p.I273N 0.21 deleterious(0) possibly_damaging(0.649) TCGA-FR-A7U9-06 X 107400419 107400419 C T COL4A6 Silent p.R1629R 0.12 TCGA-FR-A7U9-06 X 107400420 107400420 C T COL4A6 Missense_Mutation p.R1629Q 0.12 benign(0.029) TCGA-FR-A7U9-06 X 107403763 107403763 C T COL4A6 Missense_Mutation p.M1486I 0.30 benign(0.018) TCGA-FR-A7U9-06 X 107829851 107829851 C T COL4A5 Missense_Mutation p.P347S 0.24 unknown(0) TCGA-FR-A7U9-06 X 107829881 107829881 G A COL4A5 Missense_Mutation p.E357K 0.17 unknown(0) TCGA-FR-A7U9-06 X 107846239 107846239 G A COL4A5 Missense_Mutation p.G731E 0.29 unknown(0) TCGA-FR-A7U9-06 X 108652246 108652246 G A GUCY2F Missense_Mutation p.S648L 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-FR-A7U9-06 X 108719195 108719195 G A GUCY2F 5'UTR 0.22 TCGA-FR-A7U9-06 X 110491219 110491219 C T CAPN6 Missense_Mutation p.E496K 0.27 deleterious(0.03) possibly_damaging(0.636) TCGA-FR-A7U9-06 X 110970043 110970043 C T ALG13 Missense_Mutation p.S579L 0.31 tolerated(0.08) benign(0.003) TCGA-FR-A7U9-06 X 111025363 111025363 G A TRPC5 Missense_Mutation p.H634Y 0.16 deleterious(0) probably_damaging(0.98) TCGA-FR-A7U9-06 X 111698152 111698152 G A ZCCHC16 Missense_Mutation p.G66S 0.28 tolerated(0.08) benign(0.148) TCGA-FR-A7U9-06 X 11187713 11187713 G A ARHGAP6 Missense_Mutation p.S574L 0.14 deleterious(0.04) benign(0.019) TCGA-FR-A7U9-06 X 114251841 114251841 G A IL13RA2 5'UTR 0.36 TCGA-FR-A7U9-06 X 114536676 114536676 C T LUZP4 Missense_Mutation p.R71C 0.15 tolerated(0.18) benign(0) TCGA-FR-A7U9-06 X 115304477 115304477 C T AGTR2 Missense_Mutation p.P315L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 X 115568971 115568971 C T SLC6A14 Missense_Mutation p.S21L 0.14 tolerated(0.36) benign(0.002) TCGA-FR-A7U9-06 X 115582811 115582811 G A SLC6A14 Missense_Mutation p.E379K 0.26 tolerated(0.09) benign(0.034) TCGA-FR-A7U9-06 X 115590209 115590209 G A SLC6A14 3'UTR 0.28 TCGA-FR-A7U9-06 X 117718750 117718750 C T DOCK11 Missense_Mutation p.P550S 0.11 deleterious(0.05) benign(0.103) TCGA-FR-A7U9-06 X 117744354 117744354 G A DOCK11 Silent p.V1023V 0.14 TCGA-FR-A7U9-06 X 117960165 117960165 T G ZCCHC12 Missense_Mutation p.S320A 0.23 tolerated(0.11) benign(0.093) TCGA-FR-A7U9-06 X 117960229 117960229 G A ZCCHC12 Missense_Mutation p.R341Q 0.24 tolerated(0.13) possibly_damaging(0.842) TCGA-FR-A7U9-06 X 118123568 118123568 G A LONRF3 Silent p.K419K 0.16 TCGA-FR-A7U9-06 X 118717111 118717111 C T UBE2A Missense_Mutation p.P118S 0.17 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 X 118975121 118975121 C T UPF3B Missense_Mutation p.R242Q 0.21 tolerated(0.13) possibly_damaging(0.719) TCGA-FR-A7U9-06 X 119211032 119211032 C T RHOXF2B Missense_Mutation p.D101N 0.30 tolerated(0.42) benign(0.01) TCGA-FR-A7U9-06 X 119388306 119388306 C T ZBTB33 Missense_Mutation p.P346S 0.14 tolerated(0.57) benign(0.038) TCGA-FR-A7U9-06 X 119388483 119388483 G A ZBTB33 Missense_Mutation p.G405R 0.08 tolerated(0.5) benign(0.002) TCGA-FR-A7U9-06 X 120008828 120008828 C T CT47B1 Missense_Mutation p.E233K 0.16 tolerated(0.13) unknown(0) TCGA-FR-A7U9-06 X 122747398 122747398 G A THOC2 Missense_Mutation p.S1510L 0.19 tolerated(0.07) benign(0.002) TCGA-FR-A7U9-06 X 122755290 122755290 C T THOC2 Missense_Mutation p.E1312K 0.13 tolerated(0.14) benign(0.345) TCGA-FR-A7U9-06 X 123195640 123195640 G A STAG2 Silent p.E518E 0.25 TCGA-FR-A7U9-06 X 125299590 125299590 C T DCAF12L2 Silent p.L106L 0.18 TCGA-FR-A7U9-06 X 12704216 12704216 G A FRMPD4 Missense_Mutation p.E192K 0.18 tolerated(0.2) probably_damaging(0.913) TCGA-FR-A7U9-06 X 12704297 12704297 C T FRMPD4 Missense_Mutation p.R219C 0.13 deleterious(0) probably_damaging(0.973) TCGA-FR-A7U9-06 X 128709911 128709911 A G OCRL Missense_Mutation p.K584R 0.19 tolerated(0.5) benign(0.043) TCGA-FR-A7U9-06 X 12905593 12905593 G A TLR7 Missense_Mutation p.D656N 0.27 deleterious(0.03) probably_damaging(0.919) TCGA-FR-A7U9-06 X 129147400 129147400 C T BCORL1 Missense_Mutation p.P218S 0.20 unknown(0) TCGA-FR-A7U9-06 X 129148047 129148047 C T BCORL1 Silent p.V433V 0.13 TCGA-FR-A7U9-06 X 12938300 12938300 G A TLR8 Missense_Mutation p.E381K 0.14 tolerated(0.05) benign(0.008) TCGA-FR-A7U9-06 X 129480613 129480613 C T SLC25A14 Missense_Mutation p.H89Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-FR-A7U9-06 X 129630079 129630079 C T RP1-274L7.1 Intron 0.09 TCGA-FR-A7U9-06 X 130410207 130410207 G A IGSF1 Missense_Mutation p.P880L 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 X 130410937 130410937 C T IGSF1 Missense_Mutation p.D867N 0.17 tolerated(0.12) benign(0.048) TCGA-FR-A7U9-06 X 130678433 130678433 C T OR13H1 Missense_Mutation p.P129L 0.28 deleterious(0.01) possibly_damaging(0.803) TCGA-FR-A7U9-06 X 131212437 131212437 C T FRMD7 Silent p.R536R 0.28 TCGA-FR-A7U9-06 X 132159450 132159450 G A USP26 3'UTR 0.29 TCGA-FR-A7U9-06 X 134421621 134421621 C T ZNF75D Silent p.Q327Q 0.16 TCGA-FR-A7U9-06 X 134990323 134990323 C T SAGE1 Missense_Mutation p.A412V 0.34 tolerated(0.21) benign(0.031) TCGA-FR-A7U9-06 X 135067724 135067724 C T SLC9A6 Silent p.A21A 0.19 TCGA-FR-A7U9-06 X 135126865 135126865 G A SLC9A6 Silent p.T696T 0.20 TCGA-FR-A7U9-06 X 135289196 135289196 T C FHL1 Missense_Mutation p.F60L 0.14 deleterious(0.01) benign(0.142) TCGA-FR-A7U9-06 X 135429656 135429656 C T GPR112 Missense_Mutation p.S1264F 0.13 tolerated(0.12) benign(0.009) TCGA-FR-A7U9-06 X 135429948 135429948 G A GPR112 Silent p.G1361G 0.26 TCGA-FR-A7U9-06 X 135579989 135579989 C T HTATSF1 Missense_Mutation p.P49L 0.17 deleterious(0.02) benign(0.053) TCGA-FR-A7U9-06 X 138670531 138670531 C T MCF2 Missense_Mutation p.E889K 0.13 tolerated(0.32) benign(0.253) TCGA-FR-A7U9-06 X 138680579 138680579 G A MCF2 Nonsense_Mutation p.Q715* 0.10 TCGA-FR-A7U9-06 X 138869396 138869396 A G ATP11C Missense_Mutation p.F513L 0.35 tolerated(0.09) benign(0.411) TCGA-FR-A7U9-06 X 140271101 140271101 C T LDOC1 Missense_Mutation p.E36K 0.33 tolerated(0.06) possibly_damaging(0.851) TCGA-FR-A7U9-06 X 140335709 140335709 G A SPANXC Missense_Mutation p.P79S 0.08 deleterious(0.03) possibly_damaging(0.475) TCGA-FR-A7U9-06 X 140995261 140995261 C T MAGEC1 Missense_Mutation p.P691S 0.21 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FR-A7U9-06 X 142967233 142967233 G A UBE2NL Missense_Mutation p.E11K 0.19 deleterious(0.03) probably_damaging(0.979) TCGA-FR-A7U9-06 X 144905480 144905480 G A SLITRK2 Missense_Mutation p.G513R 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-FR-A7U9-06 X 147013963 147013963 C T FMR1 Missense_Mutation p.S217L 0.17 deleterious(0) benign(0.126) TCGA-FR-A7U9-06 X 148037372 148037372 G A AFF2 Silent p.R599R 0.30 TCGA-FR-A7U9-06 X 14883684 14883684 C T FANCB 5'UTR 0.10 TCGA-FR-A7U9-06 X 150868515 150868515 C T PRRG3 Missense_Mutation p.R19C 0.23 deleterious(0) possibly_damaging(0.8) TCGA-FR-A7U9-06 X 151336938 151336938 G A GABRA3 Missense_Mutation p.S414F 0.17 tolerated(0.35) benign(0.389) TCGA-FR-A7U9-06 X 151817756 151817756 C T GABRQ Silent p.F190F 0.14 TCGA-FR-A7U9-06 X 151935811 151935811 A T MAGEA3 Missense_Mutation p.F119Y 0.32 deleterious(0.05) probably_damaging(0.992) TCGA-FR-A7U9-06 X 152159765 152159765 A G PNMA5 Silent p.C126C 0.20 TCGA-FR-A7U9-06 X 152226399 152226399 C T PNMA3 Silent p.L329L 0.14 TCGA-FR-A7U9-06 X 152770123 152770123 G A BGN Missense_Mutation p.A12T 0.20 tolerated(0.44) benign(0.162) TCGA-FR-A7U9-06 X 153418446 153418446 C T OPN1LW Missense_Mutation p.S148F 0.13 deleterious(0) probably_damaging(0.974) TCGA-FR-A7U9-06 X 153588590 153588590 C T FLNA Silent p.A1191A 0.19 TCGA-FR-A7U9-06 X 153668353 153668353 G A GDI1 Missense_Mutation p.E152K 0.14 tolerated(0.09) benign(0.013) TCGA-FR-A7U9-06 X 153996677 153996677 G A DKC1 Silent p.R247R 0.14 TCGA-FR-A7U9-06 X 154132683 154132683 G A F8 Silent p.I1901I 0.30 TCGA-FR-A7U9-06 X 154157896 154157896 G A F8 Missense_Mutation p.S1390L 0.15 tolerated(0.2) benign(0.004) TCGA-FR-A7U9-06 X 154185239 154185239 C T F8 Missense_Mutation p.G582E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 X 154464558 154464558 G A VBP1 Missense_Mutation p.E145K 0.15 tolerated(0.48) benign(0.406) TCGA-FR-A7U9-06 X 154489986 154489986 C T RAB39B 3'UTR 0.12 TCGA-FR-A7U9-06 X 154508614 154508614 C T CLIC2 Missense_Mutation p.E136K 0.21 deleterious(0.04) benign(0.322) TCGA-FR-A7U9-06 X 155003451 155003451 C T SPRY3 5'UTR 0.23 TCGA-FR-A7U9-06 X 17743845 17743845 G A NHS Missense_Mutation p.R519K 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-FR-A7U9-06 X 17744681 17744681 C T NHS Missense_Mutation p.P798S 0.35 tolerated(0.7) benign(0.007) TCGA-FR-A7U9-06 X 18183155 18183155 G A BEND2 Missense_Mutation p.P792S 0.18 tolerated(0.75) benign(0.046) TCGA-FR-A7U9-06 X 18616692 18616692 A G CDKL5 Silent p.K312K 0.17 TCGA-FR-A7U9-06 X 22051141 22051141 G A PHEX Silent p.G6G 0.33 TCGA-FR-A7U9-06 X 22065229 22065229 C T PHEX Silent p.F83F 0.29 TCGA-FR-A7U9-06 X 22292031 22292031 C T ZNF645 Missense_Mutation p.S308L 0.17 tolerated(1) benign(0) TCGA-FR-A7U9-06 X 24593347 24593347 C T PCYT1B Missense_Mutation p.R266K 0.15 tolerated(1) benign(0.001) TCGA-FR-A7U9-06 X 26213014 26213014 G A MAGEB6 Missense_Mutation p.D351N 0.26 deleterious(0.05) probably_damaging(0.994) TCGA-FR-A7U9-06 X 3021877 3021877 G A ARSF Missense_Mutation p.A393T 0.22 deleterious(0.02) benign(0.355) TCGA-FR-A7U9-06 X 30236930 30236930 C T MAGEB2 Missense_Mutation p.S78F 0.28 tolerated(0.68) benign(0.004) TCGA-FR-A7U9-06 X 30254860 30254860 C T MAGEB3 Silent p.F273F 0.21 TCGA-FR-A7U9-06 X 30577746 30577746 C T CXorf21 Missense_Mutation p.E243K 0.45 deleterious(0.01) possibly_damaging(0.865) TCGA-FR-A7U9-06 X 30849476 30849476 C T TAB3 3'UTR 0.27 TCGA-FR-A7U9-06 X 30877730 30877730 T C TAB3 5'UTR 0.21 TCGA-FR-A7U9-06 X 3235164 3235164 C T MXRA5 Silent p.R2186R 0.62 TCGA-FR-A7U9-06 X 3235376 3235376 C T MXRA5 Missense_Mutation p.D2116N 0.21 deleterious(0) probably_damaging(0.946) TCGA-FR-A7U9-06 X 3235771 3235771 C T MXRA5 Nonsense_Mutation p.W1984* 0.19 TCGA-FR-A7U9-06 X 3239638 3239638 C T MXRA5 Missense_Mutation p.G1363E 0.34 tolerated(0.77) benign(0.018) TCGA-FR-A7U9-06 X 3241026 3241026 G A MXRA5 Silent p.S900S 0.16 TCGA-FR-A7U9-06 X 34148701 34148701 C T FAM47A Silent p.E565E 0.27 TCGA-FR-A7U9-06 X 34148806 34148806 G A FAM47A Silent p.L530L 0.24 TCGA-FR-A7U9-06 X 34149590 34149590 G A FAM47A Missense_Mutation p.S269F 0.34 deleterious(0) possibly_damaging(0.683) TCGA-FR-A7U9-06 X 35821128 35821128 G A MAGEB16 Missense_Mutation p.R272Q 0.16 tolerated(0.55) benign(0.001) TCGA-FR-A7U9-06 X 35988963 35988963 G A CXorf22 Silent p.K631K 0.19 TCGA-FR-A7U9-06 X 40514254 40514254 G A MED14 Missense_Mutation p.P1344L 0.28 deleterious(0) probably_damaging(0.992) TCGA-FR-A7U9-06 X 41332945 41332945 G A NYX Missense_Mutation p.R80Q 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A7U9-06 X 44703761 44703761 C T DUSP21 Missense_Mutation p.S128L 0.34 deleterious(0) probably_damaging(0.967) TCGA-FR-A7U9-06 X 46541851 46541851 T A SLC9A7 Nonsense_Mutation p.K149* 0.20 TCGA-FR-A7U9-06 X 47100988 47100988 G A USP11 Missense_Mutation p.D400N 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7U9-06 X 47307767 47307767 C T ZNF41 Missense_Mutation p.E468K 0.23 tolerated(0.28) benign(0.088) TCGA-FR-A7U9-06 X 48319038 48319038 G A SLC38A5 Silent p.F355F 0.19 TCGA-FR-A7U9-06 X 49854843 49854843 C T CLCN5 Silent p.I605I 0.17 TCGA-FR-A7U9-06 X 50053726 50053726 G A CCNB3 Missense_Mutation p.E853K 0.21 deleterious(0.02) possibly_damaging(0.636) TCGA-FR-A7U9-06 X 50345803 50345803 G A SHROOM4 Nonsense_Mutation p.Q1258* 0.20 TCGA-FR-A7U9-06 X 50350710 50350710 T A SHROOM4 Missense_Mutation p.E1144D 0.23 tolerated(0.22) benign(0.138) TCGA-FR-A7U9-06 X 51151123 51151123 C T CXorf67 Missense_Mutation p.L419F 0.22 tolerated(0.26) benign(0.023) TCGA-FR-A7U9-06 X 51238836 51238836 G A NUDT11 Missense_Mutation p.S154F 0.23 tolerated(0.34) benign(0.14) TCGA-FR-A7U9-06 X 53279613 53279613 G A IQSEC2 Silent p.S715S 0.32 TCGA-FR-A7U9-06 X 53565949 53565949 C T HUWE1 Missense_Mutation p.A3909T 0.25 unknown(0) TCGA-FR-A7U9-06 X 53578119 53578119 C T HUWE1 Missense_Mutation p.R3043Q 0.22 possibly_damaging(0.553) TCGA-FR-A7U9-06 X 54162931 54162931 G A FAM120C Silent p.S417S 0.20 TCGA-FR-A7U9-06 X 54275255 54275255 G A WNK3 Missense_Mutation p.P1176S 0.22 tolerated(0.06) benign(0.028) TCGA-FR-A7U9-06 X 54577427 54577427 C T GNL3L Silent p.I269I 0.16 TCGA-FR-A7U9-06 X 54985360 54985360 T C PFKFB1 Splice_Site p.X129_splice 0.20 TCGA-FR-A7U9-06 X 55248218 55248218 G A PAGE5 Missense_Mutation p.E54K 0.30 tolerated(0.21) possibly_damaging(0.779) TCGA-FR-A7U9-06 X 55248248 55248248 G A PAGE5 Missense_Mutation p.D64N 0.21 deleterious(0) benign(0.245) TCGA-FR-A7U9-06 X 55289786 55289786 C T PAGE3 Missense_Mutation p.E31K 0.24 tolerated(0.14) possibly_damaging(0.874) TCGA-FR-A7U9-06 X 57934432 57934432 G T ZXDA 3'UTR 0.16 TCGA-FR-A7U9-06 X 5811264 5811264 C T NLGN4X Missense_Mutation p.G682E 0.22 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 X 5821671 5821671 G A NLGN4X Missense_Mutation p.P350S 0.12 deleterious(0) probably_damaging(0.997) TCGA-FR-A7U9-06 X 5821672 5821672 G A NLGN4X Silent p.I349I 0.12 TCGA-FR-A7U9-06 X 6069255 6069255 C T NLGN4X Missense_Mutation p.E85K 0.12 tolerated(0.2) probably_damaging(0.969) TCGA-FR-A7U9-06 X 65242146 65242146 C T VSIG4 Missense_Mutation p.D387N 0.22 tolerated(0.06) benign(0.006) TCGA-FR-A7U9-06 X 66788805 66788805 G A AR Intron 0.20 TCGA-FR-A7U9-06 X 69424318 69424318 C T DGAT2L6 Missense_Mutation p.R271C 0.11 deleterious(0.01) possibly_damaging(0.79) TCGA-FR-A7U9-06 X 69458206 69458206 G A AWAT1 Missense_Mutation p.G202E 0.34 deleterious(0) probably_damaging(0.982) TCGA-FR-A7U9-06 X 69507603 69507603 G A PDZD11 Silent p.F102F 0.21 TCGA-FR-A7U9-06 X 69649734 69649734 C T GDPD2 Intron 0.19 TCGA-FR-A7U9-06 X 70340957 70340957 C T MED12 Silent p.I230I 0.17 TCGA-FR-A7U9-06 X 70514212 70514212 G A NONO Missense_Mutation p.E162K 0.17 deleterious(0.03) possibly_damaging(0.854) TCGA-FR-A7U9-06 X 70614073 70614073 G A TAF1 Silent p.K1148K 0.11 TCGA-FR-A7U9-06 X 71360073 71360073 C T NHSL2 Missense_Mutation p.P892L 0.27 tolerated(0.09) benign(0.025) TCGA-FR-A7U9-06 X 7177524 7177524 T G STS Missense_Mutation p.F178V 0.22 tolerated(0.6) probably_damaging(0.989) TCGA-FR-A7U9-06 X 73044327 73044327 G A XIST RNA 0.21 TCGA-FR-A7U9-06 X 73045887 73045887 C T XIST RNA 0.28 TCGA-FR-A7U9-06 X 73962610 73962610 C T KIAA2022 Silent p.Q594Q 0.08 TCGA-FR-A7U9-06 X 74516196 74516196 A T UPRT Missense_Mutation p.E150V 0.13 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 X 75004120 75004120 C T MAGEE2 Missense_Mutation p.R256K 0.21 deleterious(0) benign(0.339) TCGA-FR-A7U9-06 X 76854916 76854916 C T ATRX Missense_Mutation p.G1974R 0.15 benign(0.027) TCGA-FR-A7U9-06 X 76891431 76891431 G A ATRX Silent p.I1558I 0.13 TCGA-FR-A7U9-06 X 78427516 78427516 C T GPR174 3'UTR 0.14 TCGA-FR-A7U9-06 X 79698500 79698500 G A FAM46D Silent p.G154G 0.30 TCGA-FR-A7U9-06 X 79698636 79698636 C T FAM46D Missense_Mutation p.P200S 0.35 deleterious(0.01) possibly_damaging(0.474) TCGA-FR-A7U9-06 X 79990654 79990654 G A BRWD3 Silent p.V319V 0.20 TCGA-FR-A7U9-06 X 82763435 82763435 C T POU3F4 Nonsense_Mutation p.Q35* 0.17 TCGA-FR-A7U9-06 X 83129249 83129249 G A CYLC1 Silent p.K511K 0.28 TCGA-FR-A7U9-06 X 84363087 84363087 C T SATL1 Missense_Mutation p.M296I 0.21 tolerated(0.42) benign(0.398) TCGA-FR-A7U9-06 X 84526148 84526148 C T ZNF711 Nonsense_Mutation p.Q534* 0.21 TCGA-FR-A7U9-06 X 84569487 84569487 G A POF1B Missense_Mutation p.P303L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A7U9-06 X 8501043 8501043 C T KAL1 Missense_Mutation p.R679K 0.20 tolerated_low_confidence(0.51) probably_damaging(0.921) TCGA-FR-A7U9-06 X 8504949 8504949 G A KAL1 Missense_Mutation p.S495F 0.24 deleterious(0) possibly_damaging(0.747) TCGA-FR-A7U9-06 X 8768240 8768240 G A FAM9A 5'UTR 0.24 TCGA-FR-A7U9-06 X 96139955 96139955 G A RPA4 Missense_Mutation p.E216K 0.19 deleterious(0) possibly_damaging(0.586) TCGA-FR-A7U9-06 X 96396740 96396740 G A DIAPH2 Missense_Mutation p.R889Q 0.12 deleterious(0.03) benign(0.389) TCGA-FR-A7U9-06 X 9660291 9660291 G A TBL1X Nonsense_Mutation p.W296* 0.09 TCGA-FR-A7UA-06 10 107005349 107005349 G A SORCS3 Missense_Mutation p.G973E 0.18 deleterious(0.01) possibly_damaging(0.831) TCGA-FR-A7UA-06 10 114200448 114200448 G A ZDHHC6 Silent p.S175S 0.12 TCGA-FR-A7UA-06 10 124459310 124459310 C T C10orf120 5'UTR 0.18 TCGA-FR-A7UA-06 10 125539734 125539734 G A CPXM2 Silent p.T309T 0.06 TCGA-FR-A7UA-06 10 21129740 21129740 C T NEBL Silent p.G422G 0.11 TCGA-FR-A7UA-06 10 22680830 22680830 C T SPAG6 Missense_Mutation p.S393F 0.15 deleterious(0) possibly_damaging(0.895) TCGA-FR-A7UA-06 10 30317079 30317079 G A KIAA1462 Silent p.F666F 0.10 TCGA-FR-A7UA-06 10 49371708 49371708 C T FRMPD2 Missense_Mutation p.E1182K 0.14 deleterious(0.03) benign(0.048) TCGA-FR-A7UA-06 10 68857417 68857417 C T LRRTM3 Missense_Mutation p.H537Y 0.12 tolerated_low_confidence(0.18) benign(0.268) TCGA-FR-A7UA-06 10 74673106 74673106 C T OIT3 Silent p.I277I 0.13 TCGA-FR-A7UA-06 11 123777432 123777432 G A OR8D4 Missense_Mutation p.M98I 0.05 deleterious(0.04) possibly_damaging(0.526) TCGA-FR-A7UA-06 11 55063055 55063055 C T TRIM51HP RNA 0.09 TCGA-FR-A7UA-06 11 5758697 5758697 C T OR56B1 Silent p.A317A 0.07 TCGA-FR-A7UA-06 11 58607027 58607027 C T GLYATL2 Missense_Mutation p.S20N 0.06 tolerated(0.2) benign(0.021) TCGA-FR-A7UA-06 11 88961113 88961113 C T TYR Missense_Mutation p.L387F 0.05 deleterious(0.01) probably_damaging(0.911) TCGA-FR-A7UA-06 11 92532654 92532654 C T FAT3 Silent p.L2159L 0.20 TCGA-FR-A7UA-06 12 107937812 107937812 G A BTBD11 Nonsense_Mutation p.W462* 0.09 TCGA-FR-A7UA-06 12 109495887 109495887 C T USP30 Missense_Mutation p.S117F 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A7UA-06 12 110784196 110784196 C T ATP2A2 Missense_Mutation p.P1017L 0.08 tolerated_low_confidence(0.05) benign(0.004) TCGA-FR-A7UA-06 12 111701610 111701610 C T CUX2 Silent p.L90L 0.09 TCGA-FR-A7UA-06 12 119968748 119968748 G A CCDC60 Silent p.V477V 0.06 TCGA-FR-A7UA-06 12 121659930 121659930 G C P2RX4 Missense_Mutation p.A146P 0.04 deleterious(0.03) benign(0.431) TCGA-FR-A7UA-06 12 18889205 18889205 C T PLCZ1 Missense_Mutation p.E29K 0.11 tolerated(1) benign(0.086) TCGA-FR-A7UA-06 12 21207484 21207484 G A SLCO1B7 Silent p.R485R 0.07 TCGA-FR-A7UA-06 12 7848153 7848153 G A GDF3 Missense_Mutation p.R58C 0.12 deleterious(0) probably_damaging(0.911) TCGA-FR-A7UA-06 12 80746192 80746192 C T OTOGL Nonsense_Mutation p.Q1786* 0.21 TCGA-FR-A7UA-06 13 35758159 35758159 C T NBEA Silent p.F1626F 0.08 TCGA-FR-A7UA-06 13 44434103 44434103 T C CCDC122 Missense_Mutation p.K87R 0.09 tolerated(0.23) benign(0.039) TCGA-FR-A7UA-06 14 103601789 103601789 C T TNFAIP2 3'UTR 0.11 TCGA-FR-A7UA-06 14 20215708 20215708 G A OR4Q3 Missense_Mutation p.G41E 0.04 deleterious(0) possibly_damaging(0.66) TCGA-FR-A7UA-06 14 21052649 21052649 A T RNASE11 Missense_Mutation p.D46E 0.16 tolerated_low_confidence(0.31) benign(0) TCGA-FR-A7UA-06 14 24884538 24884538 C T NYNRIN Missense_Mutation p.P1195S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-FR-A7UA-06 14 52734755 52734755 G A PTGDR Missense_Mutation p.G75S 0.06 deleterious(0) probably_damaging(0.998) TCGA-FR-A7UA-06 14 95108023 95108023 G A SERPINA13P RNA 0.15 TCGA-FR-A7UA-06 15 23812457 23812457 C T MKRN3 3'UTR 0.08 TCGA-FR-A7UA-06 15 25465687 25465687 G A SNORD115-27 RNA 0.05 TCGA-FR-A7UA-06 15 45660402 45660402 C T GATM Missense_Mutation p.E181K 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 15 51773153 51773153 G A DMXL2 Silent p.I2050I 0.08 TCGA-FR-A7UA-06 15 55838489 55838489 C G PYGO1 Missense_Mutation p.R331P 0.09 tolerated(0.15) probably_damaging(0.941) TCGA-FR-A7UA-06 15 62283918 62283918 A T VPS13C Silent p.G479G 0.07 TCGA-FR-A7UA-06 15 89400344 89400344 C T ACAN Missense_Mutation p.P1510S 0.12 tolerated(0.16) benign(0.264) TCGA-FR-A7UA-06 15 89442735 89442735 G A MFGE8 Missense_Mutation p.S352F 0.05 tolerated(0.11) probably_damaging(0.951) TCGA-FR-A7UA-06 15 90142694 90142694 C T TICRR Silent p.T680T 0.05 TCGA-FR-A7UA-06 15 90794046 90794046 C T TTLL13 Missense_Mutation p.P62S 0.09 deleterious_low_confidence(0.04) benign(0.047) TCGA-FR-A7UA-06 16 14972641 14972641 C T NOMO1 Missense_Mutation p.R903C 0.07 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 16 16126969 16126969 C T ABCC1 Missense_Mutation p.P207S 0.11 deleterious(0.03) possibly_damaging(0.899) TCGA-FR-A7UA-06 16 23203689 23203689 C T SCNN1G Missense_Mutation p.S212F 0.12 deleterious(0) possibly_damaging(0.894) TCGA-FR-A7UA-06 16 27472765 27472765 G A GTF3C1 Missense_Mutation p.P2079L 0.05 tolerated(0.4) benign(0.005) TCGA-FR-A7UA-06 16 2812027 2812027 C T SRRM2 Missense_Mutation p.P500S 0.08 unknown(0) TCGA-FR-A7UA-06 16 61859039 61859039 C T CDH8 Missense_Mutation p.E238K 0.11 deleterious(0.02) possibly_damaging(0.633) TCGA-FR-A7UA-06 16 70935015 70935015 G A HYDIN Silent p.F2980F 0.07 TCGA-FR-A7UA-06 17 10451222 10451222 C T MYH2 Missense_Mutation p.E6K 0.09 deleterious_low_confidence(0.01) benign(0.026) TCGA-FR-A7UA-06 17 17698930 17698930 C T RAI1 Missense_Mutation p.P890S 0.16 tolerated(0.05) benign(0.146) TCGA-FR-A7UA-06 17 18219972 18219972 C T SMCR8 Missense_Mutation p.S290F 0.10 tolerated(0.06) benign(0.001) TCGA-FR-A7UA-06 17 36997453 36997453 A T C17orf98 Missense_Mutation p.L64M 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A7UA-06 17 40312314 40312314 C T KCNH4 Missense_Mutation p.R933K 0.10 tolerated(0.45) probably_damaging(0.986) TCGA-FR-A7UA-06 17 42882629 42882629 A C GJC1 Missense_Mutation p.V186G 0.09 tolerated(0.23) benign(0) TCGA-FR-A7UA-06 17 46607894 46607894 C T HOXB1 Missense_Mutation p.D125N 0.05 tolerated(0.33) benign(0.403) TCGA-FR-A7UA-06 17 47115613 47115613 G A IGF2BP1 Missense_Mutation p.G162E 0.15 tolerated(0.27) benign(0.206) TCGA-FR-A7UA-06 17 72926497 72926497 C T OTOP2 Missense_Mutation p.T256I 0.08 deleterious(0) probably_damaging(0.969) TCGA-FR-A7UA-06 17 7317994 7317994 C T NLGN2 Missense_Mutation p.T224I 0.10 deleterious(0.02) probably_damaging(0.914) TCGA-FR-A7UA-06 17 7661879 7661879 G A DNAH2 Silent p.K706K 0.07 TCGA-FR-A7UA-06 18 43577747 43577747 C T PSTPIP2 Missense_Mutation p.E204K 0.09 deleterious(0.05) benign(0.184) TCGA-FR-A7UA-06 18 43577748 43577748 T A PSTPIP2 Missense_Mutation p.E203D 0.09 tolerated(0.2) benign(0.021) TCGA-FR-A7UA-06 18 52586600 52586600 C T CCDC68 Missense_Mutation p.D231N 0.09 tolerated(0.22) benign(0.019) TCGA-FR-A7UA-06 18 70526163 70526163 G A NETO1 Missense_Mutation p.P123S 0.06 deleterious(0) probably_damaging(0.999) TCGA-FR-A7UA-06 19 10817991 10817991 C T QTRT1 Silent p.I155I 0.09 TCGA-FR-A7UA-06 19 1272487 1272487 A G CIRBP 3'UTR 0.09 TCGA-FR-A7UA-06 19 15904909 15904909 C T OR10H5 Silent p.F17F 0.09 TCGA-FR-A7UA-06 19 16060666 16060666 C T OR10H4 Silent p.F283F 0.13 TCGA-FR-A7UA-06 19 19655012 19655012 C T CILP2 Missense_Mutation p.A553V 0.09 tolerated(1) benign(0.003) TCGA-FR-A7UA-06 19 20117908 20117908 G T ZNF682 Missense_Mutation p.Q135K 0.08 tolerated(0.08) possibly_damaging(0.539) TCGA-FR-A7UA-06 19 33623261 33623261 C T WDR88 Silent p.A62A 0.06 TCGA-FR-A7UA-06 19 38899466 38899466 C T FAM98C Nonsense_Mutation p.R332* 0.06 TCGA-FR-A7UA-06 19 39819563 39819563 C G GMFG Intron 0.12 TCGA-FR-A7UA-06 19 43268355 43268355 C T PSG8 Missense_Mutation p.G48E 0.06 deleterious(0) probably_damaging(0.987) TCGA-FR-A7UA-06 19 43411895 43411895 C T PSG6 Nonsense_Mutation p.W273* 0.08 TCGA-FR-A7UA-06 19 45852774 45852774 G A KLC3 Missense_Mutation p.E353K 0.07 deleterious(0) probably_damaging(0.997) TCGA-FR-A7UA-06 19 49001359 49001359 C T LMTK3 Silent p.L1018L 0.06 TCGA-FR-A7UA-06 19 50880901 50880901 G A NR1H2 Silent p.L13L 0.11 TCGA-FR-A7UA-06 19 51768846 51768846 C T SIGLECL1 Missense_Mutation p.L83F 0.10 tolerated(0.64) probably_damaging(0.931) TCGA-FR-A7UA-06 19 52130779 52130779 G A SIGLEC5 Silent p.L406L 0.11 TCGA-FR-A7UA-06 19 53208660 53208660 G A ZNF611 Missense_Mutation p.H550Y 0.07 tolerated(0.49) benign(0.127) TCGA-FR-A7UA-06 19 54080195 54080195 G A ZNF331 Silent p.K127K 0.09 TCGA-FR-A7UA-06 19 54254489 54254489 G A MIR522 RNA 0.10 TCGA-FR-A7UA-06 19 56321367 56321367 G A NLRP11 Silent p.I203I 0.08 TCGA-FR-A7UA-06 19 56370446 56370446 C T NLRP4 Missense_Mutation p.P563S 0.12 tolerated(0.11) benign(0.048) TCGA-FR-A7UA-06 19 6755137 6755137 G T SH2D3A Missense_Mutation p.P229Q 0.09 deleterious(0.02) benign(0.301) TCGA-FR-A7UA-06 19 7083460 7083460 C T ZNF557 Missense_Mutation p.S333L 0.12 tolerated(0.12) possibly_damaging(0.776) TCGA-FR-A7UA-06 19 8203090 8203090 C T FBN3 Missense_Mutation p.R379Q 0.17 tolerated(0.59) benign(0.012) TCGA-FR-A7UA-06 19 9015657 9015657 C T MUC16 Silent p.R12722R 0.05 TCGA-FR-A7UA-06 19 9296579 9296579 G A OR7D2 Missense_Mutation p.G41E 0.13 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FR-A7UA-06 1 1120479 1120479 C T TTLL10 Missense_Mutation p.T464I 0.09 deleterious(0) probably_damaging(0.997) TCGA-FR-A7UA-06 1 117311235 117311235 C T CD2 Missense_Mutation p.R296C 0.11 deleterious(0) probably_damaging(0.996) TCGA-FR-A7UA-06 1 117484398 117484398 T C PTGFRN Silent p.T37T 0.14 TCGA-FR-A7UA-06 1 120057142 120057142 G A HSD3B1 Silent p.K332K 0.09 TCGA-FR-A7UA-06 1 12638920 12638920 G A DHRS3 Missense_Mutation p.S175F 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 1 151395954 151395954 G A POGZ Nonsense_Mutation p.Q533* 0.13 TCGA-FR-A7UA-06 1 152283593 152283593 A G FLG Missense_Mutation p.S1257P 0.09 possibly_damaging(0.637) TCGA-FR-A7UA-06 1 155018609 155018609 G A DCST1 Silent p.R427R 0.12 TCGA-FR-A7UA-06 1 169337013 169337013 C T NME7 5'UTR 0.11 TCGA-FR-A7UA-06 1 173516897 173516897 C T SLC9C2 Missense_Mutation p.M496I 0.12 tolerated(0.2) benign(0) TCGA-FR-A7UA-06 1 177930030 177930030 G A SEC16B Missense_Mutation p.P278S 0.19 deleterious(0.02) possibly_damaging(0.483) TCGA-FR-A7UA-06 1 196670515 196670515 G A CFH Intron 0.10 TCGA-FR-A7UA-06 1 196876116 196876116 G A CFHR4 Missense_Mutation p.D188N 0.13 tolerated(0.15) benign(0.062) TCGA-FR-A7UA-06 1 211748894 211748894 G A SLC30A1 Missense_Mutation p.P454S 0.10 tolerated(0.84) benign(0.002) TCGA-FR-A7UA-06 1 236998968 236998968 C T MTR Missense_Mutation p.S437F 0.08 deleterious(0) probably_damaging(0.995) TCGA-FR-A7UA-06 1 24447897 24447897 G A IL22RA1 Missense_Mutation p.P375S 0.07 tolerated(0.74) benign(0.367) TCGA-FR-A7UA-06 1 24447898 24447898 G A IL22RA1 Silent p.F374F 0.07 TCGA-FR-A7UA-06 1 247768910 247768910 C T OR2G3 Missense_Mutation p.S8F 0.10 tolerated(0.26) benign(0.014) TCGA-FR-A7UA-06 1 248487185 248487185 C T OR2M7 Missense_Mutation p.G229E 0.06 tolerated(0.62) benign(0.049) TCGA-FR-A7UA-06 1 24859663 24859665 CCG TTA RCAN3 Missense_Mutation p.P154L 0.13 TCGA-FR-A7UA-06 1 34070913 34070913 C T CSMD2 Silent p.R2169R 0.17 TCGA-FR-A7UA-06 1 34667858 34667858 C T C1orf94 Nonsense_Mutation p.Q482* 0.15 TCGA-FR-A7UA-06 1 3809468 3809468 C T C1orf174 Silent p.T36T 0.11 TCGA-FR-A7UA-06 1 55118809 55118809 G A MROH7 Silent p.G70G 0.08 TCGA-FR-A7UA-06 1 75107088 75107088 G A C1orf173 Missense_Mutation p.P124L 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 1 75684236 75684236 T A SLC44A5 Missense_Mutation p.M490L 0.10 tolerated(0.43) benign(0.002) TCGA-FR-A7UA-06 1 82372741 82372741 G A LPHN2 Missense_Mutation p.R38Q 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A7UA-06 1 97544465 97544465 C T DPYD 3'UTR 0.12 TCGA-FR-A7UA-06 20 13866039 13866039 C T SEL1L2 Missense_Mutation p.G304E 0.05 deleterious(0) probably_damaging(0.998) TCGA-FR-A7UA-06 20 29891074 29891074 C T DEFB116 Missense_Mutation p.D84N 0.12 tolerated(0.56) benign(0.001) TCGA-FR-A7UA-06 20 43057041 43057041 G A HNF4A Missense_Mutation p.G399E 0.11 tolerated_low_confidence(0.18) possibly_damaging(0.548) TCGA-FR-A7UA-06 20 43723849 43723849 C T KCNS1 Missense_Mutation p.G415S 0.11 deleterious(0.01) probably_damaging(1) TCGA-FR-A7UA-06 20 44506130 44506130 C T ZSWIM3 Silent p.T311T 0.09 TCGA-FR-A7UA-06 22 17071785 17071785 G A CCT8L2 Silent p.I552I 0.08 TCGA-FR-A7UA-06 22 37319338 37319338 C T CSF2RB Silent p.I43I 0.09 TCGA-FR-A7UA-06 22 37603707 37603707 G A SSTR3 Silent p.L46L 0.10 TCGA-FR-A7UA-06 22 50479664 50479664 G A TTLL8 Intron 0.15 TCGA-FR-A7UA-06 2 113943709 113943709 C T PSD4 Missense_Mutation p.S502F 0.10 tolerated_low_confidence(0.17) benign(0.01) TCGA-FR-A7UA-06 2 141128381 141128381 G A LRP1B Nonsense_Mutation p.Q3636* 0.16 TCGA-FR-A7UA-06 2 16085988 16085988 C T MYCN Silent p.I388I 0.15 TCGA-FR-A7UA-06 2 166892593 166892593 A T SCN1A Missense_Mutation p.F1132I 0.15 tolerated(0.14) possibly_damaging(0.883) TCGA-FR-A7UA-06 2 168726145 168726145 G A B3GALT1 Missense_Mutation p.R199Q 0.06 tolerated(0.18) possibly_damaging(0.459) TCGA-FR-A7UA-06 2 179407953 179407953 C T TTN Nonsense_Mutation p.W32249* 0.05 TCGA-FR-A7UA-06 2 179414070 179414070 C T TTN Silent p.K30761K 0.05 TCGA-FR-A7UA-06 2 179542486 179542486 G A TTN Silent p.L11385L 0.05 TCGA-FR-A7UA-06 2 182399589 182399589 C T ITGA4 Missense_Mutation p.T977I 0.05 tolerated(0.17) benign(0.046) TCGA-FR-A7UA-06 2 21258473 21258473 G A APOB Silent p.F267F 0.09 TCGA-FR-A7UA-06 2 228884220 228884220 G A SPHKAP Silent p.I450I 0.09 TCGA-FR-A7UA-06 2 96957163 96957163 G A SNRNP200 Silent p.L796L 0.06 TCGA-FR-A7UA-06 3 108682317 108682317 C T MORC1 Missense_Mutation p.D915N 0.08 tolerated(0.15) benign(0.015) TCGA-FR-A7UA-06 3 109047786 109047786 G A DPPA4 Missense_Mutation p.P277S 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 3 122002988 122002988 C T CASR Silent p.F739F 0.09 TCGA-FR-A7UA-06 3 15610010 15610010 G A HACL1 Silent p.F393F 0.08 TCGA-FR-A7UA-06 3 167189659 167189659 C T SERPINI2 Intron 0.12 TCGA-FR-A7UA-06 3 185797717 185797717 G A ETV5 Missense_Mutation p.S180L 0.13 tolerated(0.43) benign(0.002) TCGA-FR-A7UA-06 3 186953886 186953886 G A MASP1 Silent p.A591A 0.08 TCGA-FR-A7UA-06 3 25770714 25770714 A C NGLY1 Silent p.V507V 0.06 TCGA-FR-A7UA-06 3 36875063 36875063 G A TRANK1 Missense_Mutation p.S1960F 0.12 tolerated(0.12) benign(0.009) TCGA-FR-A7UA-06 3 37149577 37149577 C T LRRFIP2 Missense_Mutation p.R234Q 0.13 deleterious(0.03) possibly_damaging(0.493) TCGA-FR-A7UA-06 3 46945253 46945253 G A PTH1R 3'UTR 0.13 TCGA-FR-A7UA-06 3 81539594 81539594 C T GBE1 Silent p.V691V 0.10 TCGA-FR-A7UA-06 3 97851728 97851728 C T OR5H1 Missense_Mutation p.L63F 0.08 deleterious(0) probably_damaging(0.994) TCGA-FR-A7UA-06 4 100787272 100787272 G A DAPP1 Nonsense_Mutation p.W256* 0.10 TCGA-FR-A7UA-06 4 104067128 104067128 A G CENPE Missense_Mutation p.L1424P 0.04 benign(0.019) TCGA-FR-A7UA-06 4 115856476 115856476 C T NDST4 Silent p.Q474Q 0.06 TCGA-FR-A7UA-06 4 162376242 162376242 C T FSTL5 Silent p.T585T 0.11 TCGA-FR-A7UA-06 4 189068473 189068473 G A TRIML1 Missense_Mutation p.E452K 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A7UA-06 4 41607980 41607980 A G LIMCH1 Missense_Mutation p.N149D 0.06 tolerated(0.68) benign(0.012) TCGA-FR-A7UA-06 4 42145696 42145696 G A BEND4 Missense_Mutation p.S268L 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.885) TCGA-FR-A7UA-06 4 46314604 46314604 G A GABRA2 Missense_Mutation p.H129Y 0.07 tolerated(0.19) probably_damaging(0.974) TCGA-FR-A7UA-06 4 48088545 48088545 G A TXK Silent p.I298I 0.15 TCGA-FR-A7UA-06 4 48584543 48584543 G A FRYL Nonsense_Mutation p.Q653* 0.12 TCGA-FR-A7UA-06 4 56283303 56283303 A C TMEM165 Missense_Mutation p.L166F 0.05 deleterious(0) probably_damaging(0.998) TCGA-FR-A7UA-06 4 56877999 56877999 C T CEP135 Nonsense_Mutation p.Q884* 0.20 TCGA-FR-A7UA-06 4 661644 661644 G A PDE6B Splice_Site p.X785_splice 0.11 TCGA-FR-A7UA-06 4 69337281 69337281 G A TMPRSS11E Missense_Mutation p.E144K 0.11 tolerated(0.35) benign(0.032) TCGA-FR-A7UA-06 4 70504997 70504997 C T UGT2A2 Missense_Mutation p.G121E 0.15 tolerated(0.8) benign(0.098) TCGA-FR-A7UA-06 4 86605 86605 C A Z95704.2 RNA 0.06 TCGA-FR-A7UA-06 4 9557836 9557836 G A MIR548I2 RNA 0.05 TCGA-FR-A7UA-06 5 140263218 140263218 C T PCDHA13 Silent p.F455F 0.12 TCGA-FR-A7UA-06 5 140752032 140752032 C T PCDHGB3 Missense_Mutation p.H691Y 0.12 tolerated(1) benign(0.002) TCGA-FR-A7UA-06 5 140783181 140783181 G T PCDHGA9 Missense_Mutation p.R221L 0.10 tolerated_low_confidence(0.23) benign(0.02) TCGA-FR-A7UA-06 5 140783182 140783182 T G PCDHGA9 Silent p.R221R 0.10 TCGA-FR-A7UA-06 5 176335668 176335668 G A UIMC1 Silent p.S568S 0.11 TCGA-FR-A7UA-06 5 7804741 7804741 C T ADCY2 Missense_Mutation p.T940I 0.17 tolerated(0.08) probably_damaging(1) TCGA-FR-A7UA-06 6 111697788 111697788 C T REV3L Silent p.L590L 0.10 TCGA-FR-A7UA-06 6 130761812 130761812 G A TMEM200A Missense_Mutation p.G82E 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 6 152545690 152545690 G T SYNE1 Missense_Mutation p.S7154Y 0.07 possibly_damaging(0.608) TCGA-FR-A7UA-06 6 28297405 28297405 G A ZSCAN31 Missense_Mutation p.P19L 0.07 tolerated(0.67) benign(0.01) TCGA-FR-A7UA-06 6 30128518 30128518 G A TRIM10 Missense_Mutation p.L40F 0.08 deleterious(0.02) probably_damaging(0.958) TCGA-FR-A7UA-06 6 35443125 35443125 G A TEAD3 Silent p.F394F 0.12 TCGA-FR-A7UA-06 6 35544969 35544969 C T FKBP5 Silent p.R356R 0.10 TCGA-FR-A7UA-06 6 39847182 39847182 C T DAAM2 Missense_Mutation p.P592S 0.08 tolerated(0.39) benign(0.002) TCGA-FR-A7UA-06 6 41250299 41250299 G A TREM1 Silent p.V80V 0.09 TCGA-FR-A7UA-06 6 46851835 46851835 C T GPR116 Missense_Mutation p.E168K 0.05 tolerated(0.44) benign(0.014) TCGA-FR-A7UA-06 6 52871184 52871184 G A ICK Missense_Mutation p.S558F 0.13 deleterious(0) probably_damaging(0.95) TCGA-FR-A7UA-06 6 96652022 96652022 G A FUT9 Missense_Mutation p.E331K 0.11 tolerated(0.9) benign(0.326) TCGA-FR-A7UA-06 7 116955218 116955218 G C WNT2 Missense_Mutation p.I165M 0.16 tolerated(0.11) benign(0.047) TCGA-FR-A7UA-06 7 117025802 117025802 G A ASZ1 Missense_Mutation p.L168F 0.20 deleterious(0.03) probably_damaging(0.975) TCGA-FR-A7UA-06 7 129330310 129330310 C T NRF1 Missense_Mutation p.A177V 0.04 tolerated(0.06) benign(0.004) TCGA-FR-A7UA-06 7 130023241 130023241 G A CPA1 Missense_Mutation p.G165R 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A7UA-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-FR-A7UA-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.21 deleterious(0) possibly_damaging(0.838) TCGA-FR-A7UA-06 7 141765223 141765223 G A MGAM Missense_Mutation p.G1525R 0.16 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 7 142045734 142045734 C T TRBV4-2 Missense_Mutation p.P88S 0.20 tolerated(0.3) benign(0.31) TCGA-FR-A7UA-06 7 24329123 24329123 G A NPY Missense_Mutation p.G65E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 7 31855566 31855566 C T PDE1C Silent p.E655E 0.18 TCGA-FR-A7UA-06 7 31855769 31855769 C T PDE1C Splice_Site p.X588_splice 0.32 TCGA-FR-A7UA-06 7 50455064 50455064 G A IKZF1 Intron 0.26 TCGA-FR-A7UA-06 7 56007295 56007295 G A ZNF713 Missense_Mutation p.G297R 0.17 deleterious(0) probably_damaging(0.995) TCGA-FR-A7UA-06 7 81600155 81600155 G A CACNA2D1 Intron 0.19 TCGA-FR-A7UA-06 7 82579300 82579300 C T PCLO Missense_Mutation p.R3535K 0.10 unknown(0) TCGA-FR-A7UA-06 7 82581441 82581441 A C PCLO Missense_Mutation p.V2943G 0.26 unknown(0) TCGA-FR-A7UA-06 7 83095866 83095866 G A SEMA3E Missense_Mutation p.L130F 0.28 deleterious(0.01) possibly_damaging(0.891) TCGA-FR-A7UA-06 7 98507904 98507904 C T TRRAP Missense_Mutation p.P526S 0.16 benign(0) TCGA-FR-A7UA-06 8 114185969 114185969 G A CSMD3 Missense_Mutation p.P231S 0.11 deleterious(0.03) possibly_damaging(0.794) TCGA-FR-A7UA-06 8 124724977 124724977 G A ANXA13 Missense_Mutation p.P52L 0.09 tolerated(0.65) benign(0.001) TCGA-FR-A7UA-06 8 144940895 144940895 C T EPPK1 Missense_Mutation p.G2176E 0.04 probably_damaging(1) TCGA-FR-A7UA-06 8 55542844 55542844 C T RP1 Silent p.F2134F 0.12 TCGA-FR-A7UA-06 8 69633640 69633640 G A C8orf34 Missense_Mutation p.E458K 0.15 tolerated(0.1) benign(0.033) TCGA-FR-A7UA-06 8 89128865 89128865 C T MMP16 Silent p.R318R 0.05 TCGA-FR-A7UA-06 9 107367466 107367466 G A OR13C2 Missense_Mutation p.S148F 0.14 deleterious(0) probably_damaging(0.922) TCGA-FR-A7UA-06 9 113091512 113091512 C T TXNDC8 Silent p.P63P 0.07 TCGA-FR-A7UA-06 9 18574225 18574225 T A ADAMTSL1 Nonsense_Mutation p.Y145* 0.12 TCGA-FR-A7UA-06 9 27949763 27949763 G A LINGO2 Missense_Mutation p.H303Y 0.16 deleterious(0.05) benign(0.003) TCGA-FR-A7UA-06 9 78773929 78773929 C T PCSK5 Silent p.S487S 0.12 TCGA-FR-A7UA-06 X 106065317 106065317 G A TBC1D8B Silent p.E157E 0.11 TCGA-FR-A7UA-06 X 119388238 119388238 G A ZBTB33 Missense_Mutation p.G323E 0.09 tolerated(0.93) benign(0.012) TCGA-FR-A7UA-06 X 129290502 129290502 C A AIFM1 Missense_Mutation p.G61V 0.10 deleterious(0.04) benign(0.076) TCGA-FR-A7UA-06 X 14868793 14868793 C T FANCB Missense_Mutation p.E444K 0.15 tolerated(0.2) benign(0.045) TCGA-FR-A7UA-06 X 151092269 151092269 C T MAGEA4 Missense_Mutation p.P45S 0.14 tolerated(0.28) benign(0.002) TCGA-FR-A7UA-06 X 151131028 151131028 C T GABRE Missense_Mutation p.G144S 0.12 tolerated(1) probably_damaging(0.917) TCGA-FR-A7UA-06 X 151303809 151303809 G A MAGEA10 Missense_Mutation p.S95L 0.08 deleterious(0.01) benign(0.066) TCGA-FR-A7UA-06 X 152158848 152158848 C T PNMA5 Missense_Mutation p.G432E 0.11 deleterious(0) probably_damaging(0.999) TCGA-FR-A7UA-06 X 23019172 23019172 G A DDX53 Missense_Mutation p.R333K 0.10 tolerated(0.06) benign(0.021) TCGA-FR-A7UA-06 X 24593360 24593360 C T PCYT1B Missense_Mutation p.E262K 0.15 tolerated(0.07) benign(0.016) TCGA-FR-A7UA-06 X 3021931 3021931 G A ARSF Missense_Mutation p.A411T 0.06 tolerated(0.08) benign(0.13) TCGA-FR-A7UA-06 X 34961754 34961754 C T FAM47B Missense_Mutation p.S269F 0.07 deleterious(0) probably_damaging(0.998) TCGA-FR-A7UA-06 X 3530362 3530362 G A PRKX Missense_Mutation p.P319L 0.08 deleterious(0.02) possibly_damaging(0.64) TCGA-FR-A7UA-06 X 47835791 47835791 C T ZNF182 Silent p.T565T 0.10 TCGA-FR-A7UA-06 X 49086932 49086932 G A CACNA1F Missense_Mutation p.P221S 0.21 deleterious(0) probably_damaging(0.997) TCGA-FR-A7UA-06 X 49958711 49958711 G A AKAP4 Missense_Mutation p.S218F 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A7UA-06 X 54275740 54275740 G A WNK3 Missense_Mutation p.A1014V 0.11 tolerated_low_confidence(0.37) benign(0.011) TCGA-FR-A7UA-06 X 54837415 54837415 G A MAGED2 Silent p.R233R 0.20 TCGA-FR-A7UA-06 X 55248274 55248274 G A PAGE5 Silent p.G72G 0.15 TCGA-FR-A7UA-06 X 65475991 65475991 G A HEPH Silent p.K959K 0.07 TCGA-FR-A7UA-06 X 70145692 70145692 G A SLC7A3 Missense_Mutation p.P611S 0.06 tolerated(0.33) benign(0.001) TCGA-FR-A7UA-06 X 73065119 73065119 C T XIST RNA 0.09 TCGA-FR-A7UA-06 X 8538648 8538648 G A KAL1 Silent p.P318P 0.20 TCGA-FR-A7UA-06 X 86924494 86924494 C T KLHL4 3'UTR 0.23 TCGA-FR-A8YC-06 10 100189354 100189354 G A HPS1 Missense_Mutation p.P305S 0.20 deleterious(0.04) possibly_damaging(0.69) TCGA-FR-A8YC-06 10 101595952 101595952 C T ABCC2 Silent p.I1173I 0.17 TCGA-FR-A8YC-06 10 101802216 101802216 C T CPN1 Missense_Mutation p.E449K 0.60 tolerated(0.2) benign(0.003) TCGA-FR-A8YC-06 10 102568894 102568894 A T PAX2 Missense_Mutation p.T297S 0.54 tolerated(0.21) benign(0.194) TCGA-FR-A8YC-06 10 102783311 102783311 C T PDZD7 Missense_Mutation p.E142K 0.60 deleterious(0.02) possibly_damaging(0.812) TCGA-FR-A8YC-06 10 103557622 103557622 G A MGEA5 Intron 0.75 TCGA-FR-A8YC-06 10 103899079 103899079 C T PPRC1 Missense_Mutation p.P272S 0.50 tolerated_low_confidence(0.22) benign(0.01) TCGA-FR-A8YC-06 10 103917197 103917197 C T NOLC1 Missense_Mutation p.A109V 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.838) TCGA-FR-A8YC-06 10 104128066 104128066 G A GBF1 Missense_Mutation p.E911K 0.67 deleterious(0.01) possibly_damaging(0.459) TCGA-FR-A8YC-06 10 104196307 104196307 T C CUEDC2 5'Flank 0.26 TCGA-FR-A8YC-06 10 104572664 104572664 G A WBP1L Missense_Mutation p.G223D 0.13 tolerated(0.45) benign(0.02) TCGA-FR-A8YC-06 10 104831540 104831540 C T CNNM2 Missense_Mutation p.S726F 0.22 deleterious(0) benign(0.003) TCGA-FR-A8YC-06 10 105199620 105199620 C T PDCD11 Silent p.V1381V 0.36 TCGA-FR-A8YC-06 10 105792440 105792440 C T COL17A1 Missense_Mutation p.G1477E 0.12 unknown(0) TCGA-FR-A8YC-06 10 105903349 105903349 G A WDR96 Silent p.F1331F 0.24 TCGA-FR-A8YC-06 10 115417271 115417271 C T NRAP Silent p.K106K 0.27 TCGA-FR-A8YC-06 10 115970643 115970643 C T TDRD1 Missense_Mutation p.S526F 0.60 deleterious(0) probably_damaging(0.983) TCGA-FR-A8YC-06 10 116225523 116225523 G A ABLIM1 Missense_Mutation p.P459S 0.23 tolerated(0.12) possibly_damaging(0.701) TCGA-FR-A8YC-06 10 117221504 117221504 C T ATRNL1 Missense_Mutation p.R1126C 0.18 deleterious(0) possibly_damaging(0.634) TCGA-FR-A8YC-06 10 119003789 119003789 C T SLC18A2 Silent p.L143L 0.40 TCGA-FR-A8YC-06 10 120832959 120832959 G A EIF3A Missense_Mutation p.P124L 0.53 deleterious(0) unknown(0) TCGA-FR-A8YC-06 10 121411338 121411338 G A BAG3 Missense_Mutation p.D51N 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A8YC-06 10 121616903 121616903 T A MCMBP Nonsense_Mutation p.R126* 0.28 TCGA-FR-A8YC-06 10 122334703 122334703 C T PPAPDC1A Missense_Mutation p.T169I 0.29 deleterious(0.01) possibly_damaging(0.733) TCGA-FR-A8YC-06 10 1230963 1230963 C T ADARB2 Silent p.E627E 0.60 TCGA-FR-A8YC-06 10 123846531 123846531 G A TACC2 Missense_Mutation p.E1506K 0.20 possibly_damaging(0.583) TCGA-FR-A8YC-06 10 123969937 123969937 C T TACC2 Silent p.V1999V 0.60 TCGA-FR-A8YC-06 10 124057338 124057338 G A BTBD16 Missense_Mutation p.E216K 0.48 tolerated(0.38) benign(0.145) TCGA-FR-A8YC-06 10 124266290 124266290 C T HTRA1 Silent p.S287S 0.24 TCGA-FR-A8YC-06 10 124377813 124377813 C T DMBT1 Silent p.S1595S 0.27 TCGA-FR-A8YC-06 10 124380773 124380773 G A DMBT1 Missense_Mutation p.G1700R 0.58 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 10 124380881 124380881 G A DMBT1 Missense_Mutation p.G1736S 0.53 tolerated(0.77) probably_damaging(1) TCGA-FR-A8YC-06 10 124389946 124389946 C T DMBT1 Nonsense_Mutation p.R1860* 0.33 TCGA-FR-A8YC-06 10 124395546 124395546 C T DMBT1 Silent p.F2067F 0.33 TCGA-FR-A8YC-06 10 124740073 124740073 C T PSTK Silent p.L26L 0.79 TCGA-FR-A8YC-06 10 124813251 124813251 C T ACADSB Silent p.T423T 0.53 TCGA-FR-A8YC-06 10 125521553 125521553 C T CPXM2 Missense_Mutation p.E538K 0.26 tolerated(0.06) benign(0.446) TCGA-FR-A8YC-06 10 125601992 125601992 C T CPXM2 Missense_Mutation p.E176K 0.32 deleterious(0) possibly_damaging(0.844) TCGA-FR-A8YC-06 10 125769568 125769568 C T CHST15 3'UTR 0.42 TCGA-FR-A8YC-06 10 125798122 125798122 C T CHST15 Missense_Mutation p.D367N 0.23 tolerated(0.41) benign(0.009) TCGA-FR-A8YC-06 10 126086658 126086658 C A OAT Missense_Mutation p.W391C 0.61 deleterious(0) probably_damaging(0.946) TCGA-FR-A8YC-06 10 127548395 127548395 G A DHX32 Missense_Mutation p.P209L 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-FR-A8YC-06 10 12867642 12867642 C T CAMK1D Missense_Mutation p.S331L 0.25 tolerated(0.06) benign(0.04) TCGA-FR-A8YC-06 10 128851048 128851048 T C DOCK1 Missense_Mutation p.F748L 0.19 deleterious(0.01) benign(0.001) TCGA-FR-A8YC-06 10 129347834 129347834 G A NPS Silent p.K30K 0.57 TCGA-FR-A8YC-06 10 129537284 129537284 C T FOXI2 3'UTR 0.75 TCGA-FR-A8YC-06 10 129845873 129845873 T A PTPRE Intron 0.28 TCGA-FR-A8YC-06 10 129859214 129859214 A G PTPRE Missense_Mutation p.R175G 0.42 deleterious(0) possibly_damaging(0.831) TCGA-FR-A8YC-06 10 129871702 129871702 C T PTPRE Silent p.I522I 0.24 TCGA-FR-A8YC-06 10 131646670 131646670 C T EBF3 Missense_Mutation p.E363K 0.54 deleterious(0.01) possibly_damaging(0.716) TCGA-FR-A8YC-06 10 131646673 131646673 G A EBF3 Missense_Mutation p.P362S 0.28 deleterious(0.01) benign(0.054) TCGA-FR-A8YC-06 10 13364939 13364939 G A SEPHS1 Missense_Mutation p.S287L 0.50 tolerated(0.11) probably_damaging(0.928) TCGA-FR-A8YC-06 10 134940802 134940802 G A GPR123 Missense_Mutation p.R156K 0.31 tolerated(1) benign(0.004) TCGA-FR-A8YC-06 10 135015062 135015062 C T KNDC1 Missense_Mutation p.S1016L 0.28 tolerated(0.05) benign(0.028) TCGA-FR-A8YC-06 10 135053598 135053598 C T VENTX Silent p.L189L 0.22 TCGA-FR-A8YC-06 10 135438925 135438925 C T FRG2B Missense_Mutation p.R172Q 0.18 tolerated(0.08) benign(0.014) TCGA-FR-A8YC-06 10 135440184 135440184 C T FRG2B Silent p.Q21Q 0.09 TCGA-FR-A8YC-06 10 15258065 15258065 G A FAM171A1 Missense_Mutation p.L306F 0.16 deleterious(0.02) probably_damaging(0.951) TCGA-FR-A8YC-06 10 15573081 15573081 G A ITGA8 Nonsense_Mutation p.Q984* 0.27 TCGA-FR-A8YC-06 10 15697376 15697376 G A ITGA8 Silent p.V326V 0.22 TCGA-FR-A8YC-06 10 17087186 17087186 A G CUBN Silent p.G1164G 0.18 TCGA-FR-A8YC-06 10 17882729 17882729 A G MRC1L1 Silent p.G280G 0.16 TCGA-FR-A8YC-06 10 18439827 18439827 G A CACNB2 Missense_Mutation p.A46T 0.51 deleterious(0.01) possibly_damaging(0.793) TCGA-FR-A8YC-06 10 18823106 18823106 A G CACNB2 Missense_Mutation p.K386E 0.27 deleterious(0) probably_damaging(0.995) TCGA-FR-A8YC-06 10 20290850 20290850 C T PLXDC2 Missense_Mutation p.P87S 0.18 tolerated(0.86) benign(0.003) TCGA-FR-A8YC-06 10 20335909 20335909 C T PLXDC2 Missense_Mutation p.H146Y 0.27 deleterious(0) possibly_damaging(0.899) TCGA-FR-A8YC-06 10 21101737 21101737 G A NEBL Missense_Mutation p.H827Y 0.52 deleterious(0.01) possibly_damaging(0.741) TCGA-FR-A8YC-06 10 21309078 21309078 G A NEBL Missense_Mutation p.R39C 0.24 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 10 21435347 21435347 C T C10orf113 Missense_Mutation p.E31K 0.27 tolerated_low_confidence(0.3) possibly_damaging(0.801) TCGA-FR-A8YC-06 10 25887683 25887683 C T GPR158 Missense_Mutation p.S1043F 0.55 tolerated(0.08) benign(0.021) TCGA-FR-A8YC-06 10 25887877 25887877 C T GPR158 Missense_Mutation p.R1108C 0.49 tolerated(0.2) benign(0) TCGA-FR-A8YC-06 10 26243883 26243883 G A MYO3A Silent p.G83G 0.32 TCGA-FR-A8YC-06 10 26417388 26417388 C T MYO3A Missense_Mutation p.S728F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 10 26434394 26434394 G A MYO3A Silent p.L812L 0.58 TCGA-FR-A8YC-06 10 26462862 26462862 G A MYO3A Silent p.E1223E 0.28 TCGA-FR-A8YC-06 10 26558067 26558067 G A GAD2 Missense_Mutation p.D314N 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A8YC-06 10 26575313 26575313 C T GAD2 Missense_Mutation p.L426F 0.39 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 10 26589858 26589858 G A GAD2 Missense_Mutation p.E576K 0.22 deleterious(0.03) benign(0.032) TCGA-FR-A8YC-06 10 26825059 26825059 G A APBB1IP Silent p.L319L 0.26 TCGA-FR-A8YC-06 10 26825079 26825079 C T APBB1IP Missense_Mutation p.S326F 0.58 deleterious(0) probably_damaging(0.936) TCGA-FR-A8YC-06 10 27337894 27337894 C T ANKRD26 Silent p.R550R 0.26 TCGA-FR-A8YC-06 10 27687300 27687300 C T PTCHD3 Missense_Mutation p.E743K 0.27 tolerated(0.19) benign(0.202) TCGA-FR-A8YC-06 10 27964298 27964298 C T MKX Missense_Mutation p.E307K 0.24 deleterious(0) probably_damaging(0.98) TCGA-FR-A8YC-06 10 28224041 28224041 C T ARMC4 Missense_Mutation p.G798D 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 10 28260241 28260241 C T ARMC4 Missense_Mutation p.G313E 0.36 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 10 28491108 28491108 C T MPP7 Missense_Mutation p.E44K 0.22 deleterious(0.01) possibly_damaging(0.646) TCGA-FR-A8YC-06 10 29770531 29770531 C T SVIL Silent p.G1694G 0.24 TCGA-FR-A8YC-06 10 30315727 30315727 C T KIAA1462 Missense_Mutation p.S1117N 0.29 tolerated(0.16) benign(0.126) TCGA-FR-A8YC-06 10 31791428 31791428 G A ZEB1 Missense_Mutation p.D159N 0.46 deleterious(0) possibly_damaging(0.786) TCGA-FR-A8YC-06 10 31810600 31810600 G A ZEB1 Silent p.K780K 0.23 TCGA-FR-A8YC-06 10 31812864 31812864 G A ZEB1 Missense_Mutation p.E870K 0.55 tolerated(0.18) benign(0.403) TCGA-FR-A8YC-06 10 32098237 32098237 T A ARHGAP12 Splice_Site p.X684_splice 0.54 TCGA-FR-A8YC-06 10 32197288 32197288 G A ARHGAP12 Missense_Mutation p.P166S 0.55 tolerated(0.12) benign(0.067) TCGA-FR-A8YC-06 10 33017835 33017835 G A C10ORF68 Missense_Mutation p.E204K 0.15 tolerated(0.2) probably_damaging(0.953) TCGA-FR-A8YC-06 10 34649059 34649059 C T PARD3 Silent p.E612E 0.23 TCGA-FR-A8YC-06 10 37414814 37414814 C T ANKRD30A 5'UTR 0.33 TCGA-FR-A8YC-06 10 37431060 37431060 G A ANKRD30A Missense_Mutation p.G356E 0.53 tolerated(1) probably_damaging(0.972) TCGA-FR-A8YC-06 10 38407504 38407504 C T ZNF37A Silent p.T475T 0.19 TCGA-FR-A8YC-06 10 43871674 43871674 C T FXYD4 3'UTR 0.30 TCGA-FR-A8YC-06 10 43871675 43871675 C T FXYD4 3'UTR 0.30 TCGA-FR-A8YC-06 10 44866757 44866757 C T CXCL12 3'UTR 0.30 TCGA-FR-A8YC-06 10 44871479 44871479 C T CXCL12 3'Flank 0.18 TCGA-FR-A8YC-06 10 44873248 44873248 G A CXCL12 Silent p.I124I 0.60 TCGA-FR-A8YC-06 10 45642856 45642856 C T RP11-445N18.7 RNA 0.38 TCGA-FR-A8YC-06 10 45799258 45799258 G A OR13A1 Missense_Mutation p.L205F 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 10 45799809 45799809 A G OR13A1 Missense_Mutation p.M21T 0.57 deleterious(0.05) benign(0.039) TCGA-FR-A8YC-06 10 45953688 45953688 C T MARCH8 Silent p.%3D 0.30 TCGA-FR-A8YC-06 10 46961947 46961947 G A SYT15 3'UTR 0.18 TCGA-FR-A8YC-06 10 46967452 46967452 G - SYT15 Frame_Shift_Del p.Q209Sfs*20 0.20 TCGA-FR-A8YC-06 10 47000063 47000063 G A GPRIN2 Missense_Mutation p.G395R 0.11 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 10 47945805 47945805 C T FAM21B Missense_Mutation p.P1102L 0.58 deleterious(0.02) probably_damaging(0.991) TCGA-FR-A8YC-06 10 48385997 48385997 G A RBP3 Missense_Mutation p.S1032F 0.24 deleterious(0.02) possibly_damaging(0.485) TCGA-FR-A8YC-06 10 48388420 48388420 C G RBP3 Missense_Mutation p.V820L 0.55 tolerated(0.14) benign(0.001) TCGA-FR-A8YC-06 10 48413704 48413704 C T GDF2 Silent p.V388V 0.28 TCGA-FR-A8YC-06 10 48428887 48428887 G A GDF10 Silent p.P333P 0.58 TCGA-FR-A8YC-06 10 4889417 4889417 C T AKR1E2 Silent p.F305F 0.29 TCGA-FR-A8YC-06 10 49482596 49482596 C T FRMPD2 Silent p.T5T 0.30 TCGA-FR-A8YC-06 10 50530860 50530860 G A C10orf71 Silent p.T90T 0.51 TCGA-FR-A8YC-06 10 50531100 50531100 G A C10orf71 Silent p.L170L 0.39 TCGA-FR-A8YC-06 10 50594740 50594740 C T DRGX Silent p.L138L 0.28 TCGA-FR-A8YC-06 10 50916563 50916563 C T C10orf53 Missense_Mutation p.S125L 0.30 deleterious_low_confidence(0) unknown(0) TCGA-FR-A8YC-06 10 50960220 50960220 C T OGDHL Missense_Mutation p.E185K 0.33 tolerated(0.37) benign(0.004) TCGA-FR-A8YC-06 10 50964854 50964854 G A OGDHL Silent p.L115L 0.49 TCGA-FR-A8YC-06 10 52071147 52071147 C T SGMS1 Missense_Mutation p.R257Q 0.29 tolerated(0.96) benign(0.053) TCGA-FR-A8YC-06 10 52087036 52087036 G A SGMS1 Silent p.L224L 0.66 TCGA-FR-A8YC-06 10 52103524 52103524 C T SGMS1 Silent p.K117K 0.26 TCGA-FR-A8YC-06 10 52588031 52588031 C T A1CF Missense_Mutation p.G218D 0.20 tolerated(0.7) benign(0.322) TCGA-FR-A8YC-06 10 55570420 55570420 C T PCDH15 Missense_Mutation p.E1467K 0.58 benign(0.045) TCGA-FR-A8YC-06 10 55571379 55571379 C T PCDH15 Silent p.K1458K 0.41 TCGA-FR-A8YC-06 10 55582223 55582223 G A PCDH15 Missense_Mutation p.P1757S 0.21 tolerated_low_confidence(0.72) unknown(0) TCGA-FR-A8YC-06 10 55582540 55582540 C T PCDH15 Missense_Mutation p.G1651E 0.20 tolerated_low_confidence(1) benign(0.002) TCGA-FR-A8YC-06 10 55582615 55582615 G A PCDH15 Missense_Mutation p.P1626L 0.19 tolerated_low_confidence(0.1) benign(0.001) TCGA-FR-A8YC-06 10 55626458 55626458 G A PCDH15 Nonsense_Mutation p.Q1221* 0.30 TCGA-FR-A8YC-06 10 55626477 55626477 C T PCDH15 Silent p.R1214R 0.53 TCGA-FR-A8YC-06 10 60560697 60560697 C T BICC1 Missense_Mutation p.H636Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 10 61828666 61828666 T A ANK3 Missense_Mutation p.E3991D 0.33 benign(0.043) TCGA-FR-A8YC-06 10 61830238 61830238 G A ANK3 Silent p.I3467I 0.31 TCGA-FR-A8YC-06 10 61831043 61831043 G A ANK3 Missense_Mutation p.P3199L 0.36 probably_damaging(0.994) TCGA-FR-A8YC-06 10 61832926 61832926 C T ANK3 Silent p.L2571L 0.27 TCGA-FR-A8YC-06 10 61833182 61833182 T A ANK3 Missense_Mutation p.D2486V 0.32 probably_damaging(0.987) TCGA-FR-A8YC-06 10 61833636 61833636 C T ANK3 Missense_Mutation p.E2335K 0.29 probably_damaging(0.959) TCGA-FR-A8YC-06 10 61834644 61834644 C T ANK3 Missense_Mutation p.E1999K 0.52 probably_damaging(0.956) TCGA-FR-A8YC-06 10 61932092 61932092 C T ANK3 Missense_Mutation p.V818M 0.19 probably_damaging(0.95) TCGA-FR-A8YC-06 10 62029929 62029929 A T ANK3 Missense_Mutation p.F158Y 0.24 benign(0.262) TCGA-FR-A8YC-06 10 6506337 6506337 G A PRKCQ Silent p.L461L 0.26 TCGA-FR-A8YC-06 10 69905275 69905275 G A MYPN Silent p.E374E 0.43 TCGA-FR-A8YC-06 10 69948701 69948701 G A MYPN Missense_Mutation p.E915K 0.26 deleterious(0) possibly_damaging(0.881) TCGA-FR-A8YC-06 10 72293720 72293720 C T PALD1 Missense_Mutation p.P305S 0.28 tolerated(0.17) benign(0.139) TCGA-FR-A8YC-06 10 72541687 72541687 G A TBATA Silent p.F49F 0.29 TCGA-FR-A8YC-06 10 73122189 73122189 C T SLC29A3 Missense_Mutation p.L418F 0.33 tolerated(1) benign(0.009) TCGA-FR-A8YC-06 10 73406358 73406358 C T CDH23 Missense_Mutation p.S70F 0.27 deleterious(0) possibly_damaging(0.812) TCGA-FR-A8YC-06 10 73577063 73577063 G A PSAP 3'UTR 0.32 TCGA-FR-A8YC-06 10 73765588 73765588 C T CHST3 5'UTR 0.52 TCGA-FR-A8YC-06 10 73973061 73973061 C T ASCC1 5'UTR 0.59 TCGA-FR-A8YC-06 10 74811008 74811008 C T P4HA1 Splice_Site p.X235_splice 0.21 TCGA-FR-A8YC-06 10 75059416 75059416 C T TTC18 Missense_Mutation p.E492K 0.77 deleterious(0) benign(0.445) TCGA-FR-A8YC-06 10 7604938 7604938 C T ITIH5 3'UTR 0.26 TCGA-FR-A8YC-06 10 76855389 76855389 C T DUSP13 Missense_Mutation p.S163N 0.57 deleterious(0) probably_damaging(0.953) TCGA-FR-A8YC-06 10 78646932 78646932 A C KCNMA1 3'Flank 0.33 TCGA-FR-A8YC-06 10 79581626 79581626 G A DLG5 Silent p.F872F 0.19 TCGA-FR-A8YC-06 10 79614045 79614045 T A DLG5 Missense_Mutation p.N207I 0.63 deleterious(0) benign(0.185) TCGA-FR-A8YC-06 10 88414435 88414435 G A OPN4 5'UTR 0.19 TCGA-FR-A8YC-06 10 89469029 89469029 G A PAPSS2 Missense_Mutation p.G35E 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 10 90665293 90665293 A G STAMBPL1 Missense_Mutation p.I42V 0.27 tolerated(0.86) benign(0.006) TCGA-FR-A8YC-06 10 90672814 90672814 C T STAMBPL1 Intron 0.18 TCGA-FR-A8YC-06 10 91497292 91497292 T A KIF20B Silent p.L858L 0.25 TCGA-FR-A8YC-06 10 91498159 91498159 T A KIF20B Silent p.I1147I 0.38 TCGA-FR-A8YC-06 10 92509140 92509140 G A HTR7 Missense_Mutation p.P251S 0.51 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 10 93534 93534 G A TUBB8 Silent p.F266F 0.37 TCGA-FR-A8YC-06 10 95719791 95719791 C T PIPSL RNA 0.36 TCGA-FR-A8YC-06 10 95720051 95720051 G A PIPSL RNA 0.28 TCGA-FR-A8YC-06 10 95931230 95931230 G A PLCE1 Missense_Mutation p.D596N 0.29 tolerated(0.37) benign(0.17) TCGA-FR-A8YC-06 10 96058392 96058392 G A PLCE1 Silent p.G1808G 0.56 TCGA-FR-A8YC-06 10 96495189 96495189 C T CYP2C18 Silent p.F487F 0.22 TCGA-FR-A8YC-06 10 96495200 96495200 G A CYP2C18 Silent p.%3D 0.52 TCGA-FR-A8YC-06 10 96541712 96541712 C T CYP2C19 Silent p.N259N 0.19 TCGA-FR-A8YC-06 10 96541713 96541713 C T CYP2C19 Missense_Mutation p.P260S 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A8YC-06 10 96612670 96612670 G A CYP2C19 Silent p.%3D 0.28 TCGA-FR-A8YC-06 10 96698428 96698428 G A CYP2C9 5'UTR 0.28 TCGA-FR-A8YC-06 10 96702181 96702181 C T CYP2C9 Intron 0.50 TCGA-FR-A8YC-06 10 96709029 96709029 G A CYP2C9 Missense_Mutation p.M269I 0.25 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 10 96798741 96798741 G A CYP2C8 Missense_Mutation p.P402S 0.27 tolerated(0.07) benign(0.128) TCGA-FR-A8YC-06 10 96829156 96829156 C T CYP2C8 Missense_Mutation p.E2K 0.48 deleterious(0.01) benign(0.017) TCGA-FR-A8YC-06 10 97779242 97779242 C T CC2D2B Intron 0.50 TCGA-FR-A8YC-06 10 97779243 97779243 C T CC2D2B Intron 0.50 TCGA-FR-A8YC-06 10 98097919 98097919 G A DNTT Missense_Mutation p.E490K 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 10 99504646 99504646 C T ZFYVE27 Silent p.P143P 0.33 TCGA-FR-A8YC-06 10 99509340 99509340 C T ZFYVE27 Nonsense_Mutation p.R221* 0.57 TCGA-FR-A8YC-06 11 101341943 101341943 C T TRPC6 Missense_Mutation p.G794S 0.23 tolerated(0.9) benign(0.011) TCGA-FR-A8YC-06 11 102269473 102269473 A G TMEM123 3'UTR 0.70 TCGA-FR-A8YC-06 11 102643689 102643689 G A MMP10 Missense_Mutation p.P372L 0.55 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 102709417 102709417 C T MMP3 Missense_Mutation p.G365E 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A8YC-06 11 103780348 103780348 G A PDGFD 3'UTR 0.25 TCGA-FR-A8YC-06 11 106810680 106810680 G A GUCY1A2 Missense_Mutation p.H238Y 0.21 tolerated(0.64) benign(0.024) TCGA-FR-A8YC-06 11 108382445 108382445 T A EXPH5 Missense_Mutation p.K1263N 0.57 deleterious(0.01) possibly_damaging(0.474) TCGA-FR-A8YC-06 11 110501507 110501507 G A ARHGAP20 Missense_Mutation p.P66L 0.24 tolerated(0.65) possibly_damaging(0.701) TCGA-FR-A8YC-06 11 111866807 111866807 C T DIXDC1 Missense_Mutation p.R564W 0.48 deleterious(0.01) possibly_damaging(0.742) TCGA-FR-A8YC-06 11 11292740 11292740 G A GALNT18 Missense_Mutation p.S592L 0.26 deleterious(0) benign(0.317) TCGA-FR-A8YC-06 11 113270681 113270681 C T ANKK1 Missense_Mutation p.H664Y 0.49 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 11 113283497 113283497 G A DRD2 Missense_Mutation p.L307F 0.34 tolerated(0.52) benign(0.071) TCGA-FR-A8YC-06 11 113857679 113857679 G A HTR3A Missense_Mutation p.R388K 0.46 tolerated(0.22) benign(0.045) TCGA-FR-A8YC-06 11 115049471 115049471 G A CADM1 Missense_Mutation p.S368L 0.30 tolerated(0.16) benign(0.004) TCGA-FR-A8YC-06 11 1159035 1159035 C T MUC5AC Missense_Mutation p.P405S 0.57 tolerated(0.15) benign(0.085) TCGA-FR-A8YC-06 11 116661111 116661111 G A APOA5 Silent p.S278S 0.48 TCGA-FR-A8YC-06 11 116661500 116661500 C T APOA5 Missense_Mutation p.E149K 0.13 tolerated(0.11) probably_damaging(1) TCGA-FR-A8YC-06 11 117387383 117387383 C T DSCAML1 Missense_Mutation p.V588I 0.30 deleterious(0.04) benign(0.105) TCGA-FR-A8YC-06 11 118133794 118133794 G A MPZL2 Missense_Mutation p.A26V 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A8YC-06 11 118390362 118390362 C T KMT2A Missense_Mutation p.L3726F 0.20 possibly_damaging(0.843) TCGA-FR-A8YC-06 11 118764803 118764803 G A CXCR5 Missense_Mutation p.E184K 0.39 deleterious(0.02) possibly_damaging(0.855) TCGA-FR-A8YC-06 11 118849554 118849554 C T FOXR1 Missense_Mutation p.P42S 0.25 tolerated(0.12) benign(0.01) TCGA-FR-A8YC-06 11 119144697 119144697 C T CBL Missense_Mutation p.S237L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 11 119149239 119149239 G A CBL Missense_Mutation p.C416Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 11 119996531 119996531 C T TRIM29 Missense_Mutation p.E401K 0.39 tolerated(0.06) benign(0.269) TCGA-FR-A8YC-06 11 120008333 120008333 C T TRIM29 Missense_Mutation p.R136Q 0.54 deleterious(0.02) possibly_damaging(0.716) TCGA-FR-A8YC-06 11 121008304 121008304 A G TECTA Missense_Mutation p.N1039S 0.51 tolerated(0.4) benign(0.001) TCGA-FR-A8YC-06 11 121367711 121367711 A T SORL1 Nonsense_Mutation p.R298* 0.36 TCGA-FR-A8YC-06 11 121421351 121421351 A G SORL1 Silent p.E746E 0.36 TCGA-FR-A8YC-06 11 121426023 121426023 T G SORL1 Missense_Mutation p.I856S 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 121429517 121429517 C T SORL1 Missense_Mutation p.P961S 0.17 tolerated(0.4) probably_damaging(0.999) TCGA-FR-A8YC-06 11 121475031 121475031 G A SORL1 Missense_Mutation p.S1550N 0.33 tolerated(0.25) benign(0.066) TCGA-FR-A8YC-06 11 12261014 12261014 C T MICAL2 Missense_Mutation p.S699F 0.54 deleterious(0) benign(0.299) TCGA-FR-A8YC-06 11 12261015 12261015 C T MICAL2 Silent p.S699S 0.53 TCGA-FR-A8YC-06 11 122805560 122805560 G A C11orf63 Missense_Mutation p.G471R 0.35 tolerated(0.07) benign(0.056) TCGA-FR-A8YC-06 11 123524604 123524604 G A SCN3B 5'UTR 0.71 TCGA-FR-A8YC-06 11 123754837 123754837 C T TMEM225 Silent p.R136R 0.30 TCGA-FR-A8YC-06 11 123777422 123777422 C T OR8D4 Missense_Mutation p.S95F 0.25 tolerated(0.13) benign(0.015) TCGA-FR-A8YC-06 11 123810339 123810339 C T OR4D5 Missense_Mutation p.H6Y 0.30 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 11 123814497 123814497 A T OR6T1 Missense_Mutation p.F17I 0.25 deleterious(0) possibly_damaging(0.831) TCGA-FR-A8YC-06 11 123847565 123847565 G A OR10S1 Silent p.S278S 0.30 TCGA-FR-A8YC-06 11 123848117 123848117 G A OR10S1 Silent p.V94V 0.12 TCGA-FR-A8YC-06 11 123886590 123886590 C T OR10G4 Silent p.F103F 0.15 TCGA-FR-A8YC-06 11 123900474 123900474 G A OR10G8 Missense_Mutation p.V49M 0.49 tolerated(0.22) benign(0.06) TCGA-FR-A8YC-06 11 124120673 124120673 A G OR8G1 Missense_Mutation p.N84S 0.34 tolerated_low_confidence(0.25) benign(0.042) TCGA-FR-A8YC-06 11 124120723 124120723 C T OR8G1 Missense_Mutation p.L101F 0.48 tolerated_low_confidence(0.14) benign(0.386) TCGA-FR-A8YC-06 11 124179789 124179789 G A OR8D1 Silent p.L292L 0.54 TCGA-FR-A8YC-06 11 124413245 124413245 G A OR8B12 Silent p.F102F 0.62 TCGA-FR-A8YC-06 11 124440586 124440586 A T OR8A1 Missense_Mutation p.T208S 0.26 deleterious(0.01) probably_damaging(0.958) TCGA-FR-A8YC-06 11 124440587 124440587 C T OR8A1 Missense_Mutation p.T208I 0.26 tolerated(0.12) benign(0.424) TCGA-FR-A8YC-06 11 125618638 125618638 G A PATE1 3'UTR 0.53 TCGA-FR-A8YC-06 11 1256622 1256622 G A MUC5B Silent p.K953K 0.53 TCGA-FR-A8YC-06 11 129784752 129784752 G A PRDM10 Silent p.T900T 0.52 TCGA-FR-A8YC-06 11 130058478 130058478 G A ST14 Missense_Mutation p.E99K 0.58 tolerated(0.62) benign(0.14) TCGA-FR-A8YC-06 11 133790172 133790172 G A IGSF9B Missense_Mutation p.P1150S 0.19 tolerated_low_confidence(0.1) benign(0.018) TCGA-FR-A8YC-06 11 133795820 133795820 G A IGSF9B Silent p.T616T 0.21 TCGA-FR-A8YC-06 11 134151296 134151296 C T GLB1L3 Missense_Mutation p.P130S 0.33 deleterious(0) probably_damaging(0.976) TCGA-FR-A8YC-06 11 134188538 134188538 G A GLB1L3 Missense_Mutation p.G598E 0.69 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 11 14284332 14284332 C T RP11-21L19.1 3'Flank 0.13 TCGA-FR-A8YC-06 11 1619652 1619652 C T KRTAP5-2 5'Flank 0.58 TCGA-FR-A8YC-06 11 17531100 17531100 G A USH1C Missense_Mutation p.P606S 0.50 deleterious_low_confidence(0.02) benign(0.02) TCGA-FR-A8YC-06 11 1774744 1774744 C T CTSD Missense_Mutation p.A410T 0.47 tolerated(0.34) benign(0.002) TCGA-FR-A8YC-06 11 18269486 18269486 G A SAA2 Missense_Mutation p.L25F 0.20 tolerated(0.52) possibly_damaging(0.474) TCGA-FR-A8YC-06 11 18763890 18763890 G A PTPN5 Missense_Mutation p.P215L 0.55 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.10 TCGA-FR-A8YC-06 11 18955555 18955555 G A MRGPRX1 Silent p.F259F 0.11 TCGA-FR-A8YC-06 11 18955610 18955610 C T MRGPRX1 Nonsense_Mutation p.W241* 0.30 TCGA-FR-A8YC-06 11 19258999 19258999 C T E2F8 Missense_Mutation p.E105K 0.23 deleterious(0) possibly_damaging(0.682) TCGA-FR-A8YC-06 11 19955056 19955056 C T NAV2 Silent p.S445S 0.56 TCGA-FR-A8YC-06 11 20419262 20419262 C T PRMT3 Silent p.L234L 0.18 TCGA-FR-A8YC-06 11 20699518 20699518 C T NELL1 Silent p.I32I 0.18 TCGA-FR-A8YC-06 11 20959350 20959350 G A NELL1 Missense_Mutation p.G339E 0.21 tolerated(0.08) benign(0.32) TCGA-FR-A8YC-06 11 24750812 24750812 G A LUZP2 Missense_Mutation p.G54R 0.51 deleterious(0.03) benign(0.084) TCGA-FR-A8YC-06 11 25004761 25004761 C T LUZP2 Silent p.I229I 0.59 TCGA-FR-A8YC-06 11 26538397 26538397 C T ANO3 Silent p.I205I 0.30 TCGA-FR-A8YC-06 11 26552857 26552857 C T ANO3 Silent p.G281G 0.24 TCGA-FR-A8YC-06 11 26584666 26584666 G T MUC15 Missense_Mutation p.P308T 0.58 deleterious(0) probably_damaging(0.958) TCGA-FR-A8YC-06 11 26702617 26702617 G A SLC5A12 Missense_Mutation p.P487L 0.70 tolerated(0.12) benign(0.001) TCGA-FR-A8YC-06 11 27016346 27016346 G A FIBIN Silent p.V91V 0.60 TCGA-FR-A8YC-06 11 27390131 27390131 T C LGR4 Silent p.L713L 0.53 TCGA-FR-A8YC-06 11 30033132 30033132 G T KCNA4 Missense_Mutation p.T365K 0.52 tolerated(0.09) benign(0.208) TCGA-FR-A8YC-06 11 30926532 30926532 T C DCDC1 Silent p.L1428L 0.60 TCGA-FR-A8YC-06 11 31128362 31128362 G A DCDC1 Missense_Mutation p.S578F 0.28 deleterious(0) benign(0.062) TCGA-FR-A8YC-06 11 32697186 32697186 C T CCDC73 Silent p.R190R 0.33 TCGA-FR-A8YC-06 11 33565724 33565724 C T KIAA1549L Missense_Mutation p.S575F 0.23 deleterious_low_confidence(0) benign(0.316) TCGA-FR-A8YC-06 11 3422997 3422997 C T TSSC2 RNA 0.29 TCGA-FR-A8YC-06 11 34511599 34511599 G A ELF5 Silent p.S131S 0.27 TCGA-FR-A8YC-06 11 35282355 35282355 C T SLC1A2 3'UTR 0.41 TCGA-FR-A8YC-06 11 35463208 35463208 C T PAMR1 Missense_Mutation p.G302D 0.59 tolerated(0.35) benign(0.007) TCGA-FR-A8YC-06 11 36669620 36669620 C T C11orf74 Missense_Mutation p.S138F 0.20 deleterious(0) probably_damaging(0.957) TCGA-FR-A8YC-06 11 40136882 40136882 G A LRRC4C Missense_Mutation p.P321S 0.62 deleterious(0.01) benign(0.075) TCGA-FR-A8YC-06 11 40137189 40137189 G A LRRC4C Silent p.L218L 0.33 TCGA-FR-A8YC-06 11 40137440 40137440 G A LRRC4C Missense_Mutation p.R135C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 11 421190 421190 C T ANO9 Missense_Mutation p.G448D 0.21 deleterious(0) possibly_damaging(0.773) TCGA-FR-A8YC-06 11 44101122 44101122 C T ACCS Missense_Mutation p.S292F 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A8YC-06 11 4411334 4411334 G A TRIM21 Silent p.F102F 0.24 TCGA-FR-A8YC-06 11 4510706 4510706 G A OR52K1 Silent p.G192G 0.56 TCGA-FR-A8YC-06 11 45924081 45924081 C T MAPK8IP1 Missense_Mutation p.P255S 0.33 tolerated(0.19) benign(0.039) TCGA-FR-A8YC-06 11 4616188 4616188 G A OR52I1 Missense_Mutation p.G307E 0.20 tolerated(0.09) benign(0.027) TCGA-FR-A8YC-06 11 47368181 47368181 G A MYBPC3 Missense_Mutation p.P308L 0.16 tolerated(0.14) benign(0.001) TCGA-FR-A8YC-06 11 4790871 4790871 C T OR51F1 Missense_Mutation p.E93K 0.73 tolerated(0.09) benign(0.018) TCGA-FR-A8YC-06 11 4791058 4791058 G A OR51F1 Silent p.S30S 0.22 TCGA-FR-A8YC-06 11 48188875 48188875 C G PTPRJ Silent p.P1325P 0.33 TCGA-FR-A8YC-06 11 48286309 48286309 T A OR4X1 Missense_Mutation p.F299L 0.15 tolerated(1) benign(0) TCGA-FR-A8YC-06 11 48327774 48327774 C T OR4S1 5'Flank 0.28 TCGA-FR-A8YC-06 11 4842693 4842693 C T OR51F2 Silent p.F26F 0.56 TCGA-FR-A8YC-06 11 4843403 4843403 C T OR51F2 Missense_Mutation p.S263F 0.50 deleterious(0.03) benign(0.275) TCGA-FR-A8YC-06 11 4843416 4843416 C T OR51F2 Silent p.L267L 0.25 TCGA-FR-A8YC-06 11 48510793 48510793 G A OR4A47 Missense_Mutation p.G150E 0.53 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FR-A8YC-06 11 48510823 48510823 T A OR4A47 Missense_Mutation p.I160N 0.56 deleterious_low_confidence(0) benign(0.158) TCGA-FR-A8YC-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.55 deleterious(0) probably_damaging(0.965) TCGA-FR-A8YC-06 11 4929018 4929018 G A OR51A7 Missense_Mutation p.R140K 0.52 deleterious(0.04) benign(0.062) TCGA-FR-A8YC-06 11 4935985 4935985 C T OR51G2 Silent p.Q303Q 0.20 TCGA-FR-A8YC-06 11 4945095 4945095 G A OR51G1 Missense_Mutation p.L159F 0.27 tolerated(1) benign(0.021) TCGA-FR-A8YC-06 11 4945291 4945291 C T OR51G1 Silent p.E93E 0.27 TCGA-FR-A8YC-06 11 4967795 4967795 G A OR51A4 Missense_Mutation p.S179F 0.12 deleterious(0) probably_damaging(0.918) TCGA-FR-A8YC-06 11 4976408 4976408 G A OR51A2 Missense_Mutation p.S179F 0.17 deleterious(0) probably_damaging(0.918) TCGA-FR-A8YC-06 11 49974289 49974289 C T OR4C13 Silent p.F105F 0.60 TCGA-FR-A8YC-06 11 49974654 49974654 G A OR4C13 Missense_Mutation p.S227N 0.59 tolerated_low_confidence(0.06) benign(0.12) TCGA-FR-A8YC-06 11 5011918 5011918 G A MMP26 Silent p.L137L 0.57 TCGA-FR-A8YC-06 11 5068408 5068408 C T OR52J3 Missense_Mutation p.S218L 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 51515293 51515293 G A OR4C46 Silent p.R4R 0.19 TCGA-FR-A8YC-06 11 5172787 5172787 G A OR52A1 Silent p.I271I 0.63 TCGA-FR-A8YC-06 11 5173061 5173061 G A OR52A1 Missense_Mutation p.S180F 0.29 deleterious(0.01) probably_damaging(0.918) TCGA-FR-A8YC-06 11 5221506 5221506 G A OR51V1 Missense_Mutation p.S142F 0.25 deleterious(0.02) possibly_damaging(0.835) TCGA-FR-A8YC-06 11 5254274 5254274 C T HBD Missense_Mutation p.E122K 0.26 tolerated(0.08) benign(0.015) TCGA-FR-A8YC-06 11 5322889 5322889 G A OR51B4 Silent p.F96F 0.48 TCGA-FR-A8YC-06 11 5323029 5323029 C T OR51B4 Missense_Mutation p.D50N 0.26 deleterious(0.04) benign(0.048) TCGA-FR-A8YC-06 11 55032634 55032634 C T TRIM48 Silent p.F101F 0.32 TCGA-FR-A8YC-06 11 55038114 55038114 C T TRIM48 3'UTR 0.64 TCGA-FR-A8YC-06 11 55110792 55110792 G A OR4A16 Missense_Mutation p.G39E 0.59 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-FR-A8YC-06 11 55322441 55322441 C T OR4C15 Missense_Mutation p.P220L 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.837) TCGA-FR-A8YC-06 11 55340347 55340347 C T OR4C16 Silent p.F248F 0.20 TCGA-FR-A8YC-06 11 5537337 5537337 G A UBQLNL Missense_Mutation p.S112F 0.22 deleterious(0.04) possibly_damaging(0.888) TCGA-FR-A8YC-06 11 55406178 55406178 G A OR4P4 Silent p.G115G 0.25 TCGA-FR-A8YC-06 11 55418568 55418568 C T OR4S2 Silent p.F63F 0.25 TCGA-FR-A8YC-06 11 55433225 55433225 C T OR4C6 Missense_Mutation p.L195F 0.29 tolerated_low_confidence(0.05) benign(0.2) TCGA-FR-A8YC-06 11 55579059 55579059 G A OR5L1 Silent p.L39L 0.57 TCGA-FR-A8YC-06 11 555824 555824 G A C11orf35 Missense_Mutation p.P495L 0.67 tolerated(0.21) possibly_damaging(0.895) TCGA-FR-A8YC-06 11 55606966 55606966 C T OR5D16 Silent p.L247L 0.52 TCGA-FR-A8YC-06 11 55659168 55659168 C T TRIM51 3'UTR 0.21 TCGA-FR-A8YC-06 11 55682019 55682019 G A OR5W2 Missense_Mutation p.L14F 0.29 tolerated(0.41) benign(0.083) TCGA-FR-A8YC-06 11 55735475 55735475 G A OR10AG1 Silent p.F155F 0.52 TCGA-FR-A8YC-06 11 55905035 55905035 G A OR8J3 Nonsense_Mutation p.R54* 0.30 TCGA-FR-A8YC-06 11 56086615 56086615 C T OR8K3 Missense_Mutation p.T278I 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-FR-A8YC-06 11 56185606 56185606 A G OR5R1 Missense_Mutation p.Y35H 0.51 deleterious(0) possibly_damaging(0.83) TCGA-FR-A8YC-06 11 56409415 56409415 C T OR5AP2 Silent p.G167G 0.26 TCGA-FR-A8YC-06 11 5653907 5653907 T C TRIM34 Missense_Mutation p.C116R 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 56757274 56757274 G A OR5AK2 Missense_Mutation p.E296K 0.52 deleterious(0) benign(0.027) TCGA-FR-A8YC-06 11 56949479 56949479 T A LRRC55 Missense_Mutation p.C38S 0.60 tolerated_low_confidence(0.47) benign(0) TCGA-FR-A8YC-06 11 57004463 57004463 C T APLNR Missense_Mutation p.D6N 0.51 tolerated(0.16) benign(0.08) TCGA-FR-A8YC-06 11 57261527 57261527 G A SLC43A1 Silent p.D270D 0.35 TCGA-FR-A8YC-06 11 57314070 57314070 G C SMTNL1 Missense_Mutation p.E447Q 0.18 tolerated(0.25) benign(0.088) TCGA-FR-A8YC-06 11 57958868 57958868 G A OR9Q2 Silent p.R302R 0.27 TCGA-FR-A8YC-06 11 5809245 5809245 C T OR52N1 Missense_Mutation p.G268R 0.88 tolerated(0.09) benign(0.169) TCGA-FR-A8YC-06 11 58294835 58294835 G A LPXN 3'UTR 0.27 TCGA-FR-A8YC-06 11 5842084 5842084 G A OR52N2 Silent p.G173G 0.45 TCGA-FR-A8YC-06 11 5862468 5862468 G A OR52E6 Silent p.I220I 0.65 TCGA-FR-A8YC-06 11 5878198 5878198 G A OR52E8 Silent p.T245T 0.32 TCGA-FR-A8YC-06 11 58891825 58891825 G T FAM111B Missense_Mutation p.L85F 0.50 tolerated(0.1) benign(0.045) TCGA-FR-A8YC-06 11 59282606 59282606 C T OR4D9 Missense_Mutation p.S74F 0.27 deleterious(0.01) probably_damaging(0.925) TCGA-FR-A8YC-06 11 59814613 59814613 C T OOSP2 3'UTR 0.17 TCGA-FR-A8YC-06 11 6007836 6007836 C T OR52L1 Missense_Mutation p.E109K 0.14 deleterious(0.03) benign(0.234) TCGA-FR-A8YC-06 11 60183867 60183867 G A MS4A14 Missense_Mutation p.E509K 0.66 tolerated(0.24) benign(0.007) TCGA-FR-A8YC-06 11 60541390 60541390 C T MS4A15 Silent p.F193F 0.30 TCGA-FR-A8YC-06 11 60665409 60665409 G A PRPF19 Silent p.I442I 0.63 TCGA-FR-A8YC-06 11 60665411 60665411 T A PRPF19 Missense_Mutation p.I442F 0.63 tolerated(0.71) benign(0) TCGA-FR-A8YC-06 11 60785446 60785446 C T CD6 Missense_Mutation p.P600S 0.19 deleterious(0.03) benign(0.327) TCGA-FR-A8YC-06 11 61026119 61026119 C T VWCE 3'UTR 0.44 TCGA-FR-A8YC-06 11 613029 613029 C T IRF7 Silent p.R455R 0.21 TCGA-FR-A8YC-06 11 613030 613030 C T IRF7 Missense_Mutation p.R455K 0.22 tolerated(0.38) probably_damaging(0.928) TCGA-FR-A8YC-06 11 61404301 61404301 G A RPLP0P2 RNA 0.63 TCGA-FR-A8YC-06 11 61553323 61553323 T C MYRF Missense_Mutation p.Y1118H 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 61560067 61560067 G A TMEM258 5'UTR 0.69 TCGA-FR-A8YC-06 11 61630500 61630500 C T FADS2 Silent p.F313F 0.56 TCGA-FR-A8YC-06 11 62287461 62287461 C T AHNAK Missense_Mutation p.D4810N 0.28 possibly_damaging(0.823) TCGA-FR-A8YC-06 11 62295334 62295334 G A AHNAK Silent p.S2185S 0.21 TCGA-FR-A8YC-06 11 62297592 62297592 T C AHNAK Missense_Mutation p.K1433E 0.30 probably_damaging(0.997) TCGA-FR-A8YC-06 11 62297783 62297783 G A AHNAK Missense_Mutation p.P1369L 0.29 probably_damaging(0.982) TCGA-FR-A8YC-06 11 62375758 62375758 G A EML3 Missense_Mutation p.A374V 0.58 tolerated(0.46) benign(0.345) TCGA-FR-A8YC-06 11 62439330 62439330 T C C11orf83 Missense_Mutation p.M38T 0.17 deleterious(0) benign(0.092) TCGA-FR-A8YC-06 11 62502871 62502871 G T TTC9C Nonsense_Mutation p.E86* 0.16 TCGA-FR-A8YC-06 11 62566134 62566134 G A NXF1 Intron 0.47 TCGA-FR-A8YC-06 11 62760907 62760907 G A SLC22A8 Silent p.D506D 0.52 TCGA-FR-A8YC-06 11 62933532 62933532 G A SLC22A25 Silent p.I423I 0.26 TCGA-FR-A8YC-06 11 62984832 62984832 G A SLC22A25 Nonsense_Mutation p.Q262* 0.50 TCGA-FR-A8YC-06 11 62996845 62996845 G A SLC22A25 Missense_Mutation p.P94S 0.21 deleterious(0.03) possibly_damaging(0.468) TCGA-FR-A8YC-06 11 62996886 62996886 T C SLC22A25 Missense_Mutation p.D80G 0.52 tolerated(0.22) possibly_damaging(0.606) TCGA-FR-A8YC-06 11 62997100 62997100 G A SLC22A25 Nonsense_Mutation p.Q9* 0.61 TCGA-FR-A8YC-06 11 63138646 63138646 G A SLC22A9 Missense_Mutation p.A148T 0.27 tolerated(0.15) possibly_damaging(0.461) TCGA-FR-A8YC-06 11 63141402 63141402 G A SLC22A9 Missense_Mutation p.G233E 0.58 tolerated(0.86) possibly_damaging(0.61) TCGA-FR-A8YC-06 11 63177336 63177336 G A SLC22A9 3'UTR 0.29 TCGA-FR-A8YC-06 11 63177341 63177341 C T SLC22A9 3'UTR 0.54 TCGA-FR-A8YC-06 11 63668064 63668064 C T MARK2 Missense_Mutation p.R268C 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 63961723 63961723 C T STIP1 Silent p.T94T 0.27 TCGA-FR-A8YC-06 11 64132816 64132816 C T RPS6KA4 Missense_Mutation p.P317L 0.17 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 11 64390363 64390363 G A NRXN2 Silent p.S1345S 0.31 TCGA-FR-A8YC-06 11 64453131 64453131 C T NRXN2 Missense_Mutation p.R380Q 0.58 deleterious(0) benign(0.428) TCGA-FR-A8YC-06 11 64453192 64453192 G A NRXN2 Missense_Mutation p.L360F 0.27 deleterious(0.04) possibly_damaging(0.734) TCGA-FR-A8YC-06 11 64602046 64602046 G A CDC42BPG Missense_Mutation p.H727Y 0.42 tolerated(0.48) probably_damaging(0.993) TCGA-FR-A8YC-06 11 6462115 6462115 G A HPX Missense_Mutation p.P27S 0.28 tolerated(0.26) benign(0.004) TCGA-FR-A8YC-06 11 64666213 64666213 G A ATG2A Silent p.I1522I 0.21 TCGA-FR-A8YC-06 11 64756571 64756571 G A BATF2 3'UTR 0.61 TCGA-FR-A8YC-06 11 65380778 65380778 G A MAP3K11 Silent p.P150P 0.49 TCGA-FR-A8YC-06 11 65714868 65714868 G A TSGA10IP RNA 0.19 TCGA-FR-A8YC-06 11 65714923 65714923 G C TSGA10IP RNA 0.26 TCGA-FR-A8YC-06 11 66191470 66191470 C T NPAS4 Missense_Mutation p.P370L 0.56 tolerated(0.42) benign(0.001) TCGA-FR-A8YC-06 11 66358625 66358625 G A CCDC87 Missense_Mutation p.P621L 0.58 tolerated(0.08) benign(0.006) TCGA-FR-A8YC-06 11 66359756 66359756 C T CCDC87 Missense_Mutation p.G244E 0.48 tolerated(0.89) probably_damaging(0.931) TCGA-FR-A8YC-06 11 66468242 66468242 G A SPTBN2 Silent p.L1110L 0.57 TCGA-FR-A8YC-06 11 66468243 66468243 G A SPTBN2 Silent p.A1109A 0.62 TCGA-FR-A8YC-06 11 66475615 66475615 G A SPTBN2 Silent p.S449S 0.31 TCGA-FR-A8YC-06 11 6651353 6651353 G T DCHS1 Missense_Mutation p.Q1558K 0.33 tolerated(0.13) benign(0.142) TCGA-FR-A8YC-06 11 67286510 67286510 G A CABP2 3'UTR 0.33 TCGA-FR-A8YC-06 11 67412613 67412613 C T ACY3 Silent p.L179L 0.58 TCGA-FR-A8YC-06 11 67829480 67829480 G A CHKA Silent p.F418F 0.29 TCGA-FR-A8YC-06 11 68540830 68540830 G A CPT1A Missense_Mutation p.S548F 0.51 tolerated(0.12) benign(0.355) TCGA-FR-A8YC-06 11 6977377 6977377 G A ZNF215 Missense_Mutation p.R390Q 0.34 tolerated(0.18) probably_damaging(0.988) TCGA-FR-A8YC-06 11 70332258 70332258 G A SHANK2 Silent p.S1381S 0.74 TCGA-FR-A8YC-06 11 7063651 7063651 G A NLRP14 Missense_Mutation p.E132K 0.55 deleterious(0.04) possibly_damaging(0.788) TCGA-FR-A8YC-06 11 71276846 71276846 G A KRTAP5-10 Silent p.K71K 0.51 TCGA-FR-A8YC-06 11 71931936 71931936 C A FOLR2 Missense_Mutation p.A58D 0.49 deleterious(0) probably_damaging(0.97) TCGA-FR-A8YC-06 11 72145596 72145596 G A CLPB 5'UTR 0.36 TCGA-FR-A8YC-06 11 74168376 74168376 C T KCNE3 Missense_Mutation p.G78E 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 74168600 74168600 A G KCNE3 Silent p.T3T 0.45 TCGA-FR-A8YC-06 11 74907617 74907617 G A SLCO2B1 Missense_Mutation p.D498N 0.26 tolerated(0.21) benign(0.032) TCGA-FR-A8YC-06 11 75113481 75113481 C A RPS3 Missense_Mutation p.A130D 0.67 deleterious(0.01) possibly_damaging(0.811) TCGA-FR-A8YC-06 11 76804838 76804838 C T CAPN5 Silent p.S92S 0.22 TCGA-FR-A8YC-06 11 76804839 76804839 C T CAPN5 Missense_Mutation p.R93W 0.22 deleterious(0.03) probably_damaging(0.993) TCGA-FR-A8YC-06 11 76892519 76892519 G A MYO7A Missense_Mutation p.E930K 0.27 tolerated(0.23) probably_damaging(0.996) TCGA-FR-A8YC-06 11 791965 791965 G A SLC25A22 Silent p.L308L 0.56 TCGA-FR-A8YC-06 11 7981283 7981283 C T NLRP10 Missense_Mutation p.E626K 0.39 tolerated_low_confidence(0.72) benign(0.292) TCGA-FR-A8YC-06 11 8060477 8060477 G A TUB Silent p.G19G 0.34 TCGA-FR-A8YC-06 11 82536006 82536006 A G PRCP Missense_Mutation p.V499A 0.27 tolerated(0.37) benign(0.016) TCGA-FR-A8YC-06 11 82868501 82868501 C T PCF11 Missense_Mutation p.A7V 0.80 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-FR-A8YC-06 11 82868502 82868502 C T PCF11 Silent p.A7A 0.73 TCGA-FR-A8YC-06 11 83676447 83676447 G A DLG2 Missense_Mutation p.S374L 0.19 tolerated(0.06) probably_damaging(0.988) TCGA-FR-A8YC-06 11 85366749 85366749 C T TMEM126A Missense_Mutation p.A131V 0.32 tolerated(0.06) probably_damaging(0.981) TCGA-FR-A8YC-06 11 85459370 85459370 G A SYTL2 Silent p.I66I 0.18 TCGA-FR-A8YC-06 11 85723387 85723387 G A PICALM Missense_Mutation p.L199F 0.06 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YC-06 11 88780804 88780804 G A GRM5 Silent p.I79I 0.29 TCGA-FR-A8YC-06 11 88781046 88781046 G A GRM5 5'UTR 0.60 TCGA-FR-A8YC-06 11 89424050 89424050 G A FOLH1B Intron 0.25 TCGA-FR-A8YC-06 11 89531573 89531573 G A TRIM49 Missense_Mutation p.R362W 0.35 tolerated(1) benign(0) TCGA-FR-A8YC-06 11 89774361 89774361 G A TRIM49C Silent p.Q334Q 0.38 TCGA-FR-A8YC-06 11 89892474 89892474 G A NAALAD2 Missense_Mutation p.G320R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 11 92592396 92592396 G A FAT3 Missense_Mutation p.E3856K 0.29 benign(0.001) TCGA-FR-A8YC-06 11 93796727 93796727 C T HEPHL1 Missense_Mutation p.P157S 0.57 tolerated(0.37) possibly_damaging(0.862) TCGA-FR-A8YC-06 11 93806322 93806322 G A HEPHL1 Missense_Mutation p.G455E 0.65 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 11 94209526 94209526 T A MRE11A Missense_Mutation p.K196N 0.20 tolerated(0.55) benign(0.023) TCGA-FR-A8YC-06 11 94730480 94730480 C T KDM4D 5'UTR 0.53 TCGA-FR-A8YC-06 11 9495502 9495502 G A ZNF143 Missense_Mutation p.D74N 0.28 deleterious(0) benign(0.411) TCGA-FR-A8YC-06 11 95712463 95712463 G A MAML2 Silent p.T1040T 0.55 TCGA-FR-A8YC-06 11 99786792 99786792 G A CNTN5 Missense_Mutation p.G195E 0.48 tolerated(1) possibly_damaging(0.448) TCGA-FR-A8YC-06 11 99944932 99944932 G A CNTN5 Missense_Mutation p.D496N 0.20 deleterious(0) benign(0.007) TCGA-FR-A8YC-06 12 100166849 100166849 C T ANKS1B Missense_Mutation p.E327K 0.63 tolerated(0.19) probably_damaging(0.971) TCGA-FR-A8YC-06 12 100926345 100926345 G A NR1H4 Silent p.R195R 0.26 TCGA-FR-A8YC-06 12 101433843 101433843 G A ANO4 Silent p.L301L 0.20 TCGA-FR-A8YC-06 12 101520799 101520799 G A ANO4 Missense_Mutation p.R905Q 0.50 tolerated(0.37) benign(0.04) TCGA-FR-A8YC-06 12 101560460 101560460 C T SLC5A8 Silent p.L446L 0.17 TCGA-FR-A8YC-06 12 101581226 101581226 G A SLC5A8 Silent p.L301L 0.54 TCGA-FR-A8YC-06 12 101603398 101603398 C T SLC5A8 Missense_Mutation p.E77K 0.11 deleterious(0) possibly_damaging(0.902) TCGA-FR-A8YC-06 12 101880559 101880559 C T SPIC 3'UTR 0.49 TCGA-FR-A8YC-06 12 102008310 102008310 G A MYBPC1 Splice_Site p.X21_splice 0.47 TCGA-FR-A8YC-06 12 103246685 103246685 G A PAH Silent p.S250S 0.25 TCGA-FR-A8YC-06 12 104149389 104149389 G A STAB2 Splice_Site p.X2294_splice 0.17 TCGA-FR-A8YC-06 12 10599256 10599256 T G KLRC1 Missense_Mutation p.K199T 0.60 tolerated(0.63) benign(0.014) TCGA-FR-A8YC-06 12 106633301 106633301 A T CKAP4 Missense_Mutation p.L437H 0.30 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 12 106633915 106633915 G A CKAP4 Silent p.S232S 0.27 TCGA-FR-A8YC-06 12 106740266 106740266 G A TCP11L2 Silent p.E506E 0.41 TCGA-FR-A8YC-06 12 107048045 107048045 C T RFX4 Silent p.I86I 0.18 TCGA-FR-A8YC-06 12 108011122 108011122 C T BTBD11 Missense_Mutation p.P714S 0.61 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 12 108013873 108013873 G A BTBD11 Missense_Mutation p.E855K 0.45 deleterious(0) possibly_damaging(0.576) TCGA-FR-A8YC-06 12 108589778 108589778 G A WSCD2 Missense_Mutation p.G57S 0.49 tolerated(0.93) benign(0.001) TCGA-FR-A8YC-06 12 109947400 109947400 G A UBE3B Splice_Site p.X541_splice 0.17 TCGA-FR-A8YC-06 12 109967776 109967776 C T UBE3B Silent p.F903F 0.57 TCGA-FR-A8YC-06 12 110825658 110825658 G A ANAPC7 Missense_Mutation p.S221F 0.30 deleterious(0) possibly_damaging(0.781) TCGA-FR-A8YC-06 12 110956740 110956740 G A RAD9B Missense_Mutation p.G255E 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 12 111742015 111742015 G A CUX2 Missense_Mutation p.R252Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 112229121 112229121 C T ALDH2 Silent p.P231P 0.33 TCGA-FR-A8YC-06 12 112457580 112457580 C T ERP29 Silent p.F55F 0.29 TCGA-FR-A8YC-06 12 112657198 112657198 G A HECTD4 Nonsense_Mutation p.R2210* 0.48 TCGA-FR-A8YC-06 12 112657199 112657199 G A HECTD4 Silent p.D2209D 0.49 TCGA-FR-A8YC-06 12 112708095 112708098 ATGT TAA HECTD4 Frame_Shift_Del p.D559Vfs*52 0.25 TCGA-FR-A8YC-06 12 113328774 113328774 G A RPH3A Missense_Mutation p.D581N 0.55 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 12 113386929 113386929 G A OAS3 Silent p.Q431Q 0.51 TCGA-FR-A8YC-06 12 113424990 113424990 C T OAS2 Silent p.L109L 0.30 TCGA-FR-A8YC-06 12 113425177 113425177 A G OAS2 Intron 0.25 TCGA-FR-A8YC-06 12 11420641 11420641 C T PRB3 Missense_Mutation p.G181E 0.86 tolerated(0.16) unknown(0) TCGA-FR-A8YC-06 12 11420859 11420859 G T PRB3 Missense_Mutation p.N108K 0.24 tolerated(0.07) unknown(0) TCGA-FR-A8YC-06 12 11461501 11461501 C T PRB4 Missense_Mutation p.G139E 0.25 tolerated_low_confidence(0.18) unknown(0) TCGA-FR-A8YC-06 12 117462048 117462048 C T FBXW8 Silent p.I488I 0.10 TCGA-FR-A8YC-06 12 117612136 117612136 G A FBXO21 Silent p.S250S 0.37 TCGA-FR-A8YC-06 12 118105284 118105284 G A KSR2 Missense_Mutation p.S389F 0.54 deleterious(0.04) benign(0.407) TCGA-FR-A8YC-06 12 119617482 119617482 C T HSPB8 Missense_Mutation p.S122F 0.32 deleterious(0) possibly_damaging(0.886) TCGA-FR-A8YC-06 12 119954445 119954445 G A CCDC60 Missense_Mutation p.E301K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 12 12037501 12037501 C T ETV6 Nonsense_Mutation p.R378* 0.67 TCGA-FR-A8YC-06 12 120875955 120875955 T G COX6A1 Missense_Mutation p.V9G 0.22 deleterious(0.01) unknown(0) TCGA-FR-A8YC-06 12 120947854 120947854 G A COQ5 Missense_Mutation p.A216V 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 12 121205393 121205393 G A SPPL3 Silent p.S259S 0.54 TCGA-FR-A8YC-06 12 122209444 122209444 C T TMEM120B Missense_Mutation p.S223F 0.21 deleterious(0.04) probably_damaging(0.954) TCGA-FR-A8YC-06 12 122691373 122691373 A G B3GNT4 Missense_Mutation p.N192S 0.59 deleterious(0) probably_damaging(0.97) TCGA-FR-A8YC-06 12 122745867 122745867 A G VPS33A Silent p.L142L 0.24 TCGA-FR-A8YC-06 12 122839685 122839685 G A CLIP1 Silent p.L394L 0.26 TCGA-FR-A8YC-06 12 123472332 123472332 C T PITPNM2 Silent p.K1038K 0.36 TCGA-FR-A8YC-06 12 123641440 123641440 G A MPHOSPH9 Missense_Mutation p.R1004C 0.52 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 123968755 123968755 G A RILPL1 Missense_Mutation p.P347S 0.47 tolerated(0.75) benign(0.232) TCGA-FR-A8YC-06 12 125461950 125461950 A T DHX37 Silent p.G275G 0.38 TCGA-FR-A8YC-06 12 125900150 125900150 G A TMEM132B Missense_Mutation p.E340K 0.32 tolerated(0.05) benign(0.329) TCGA-FR-A8YC-06 12 126135433 126135433 G A TMEM132B Silent p.P611P 0.32 TCGA-FR-A8YC-06 12 126139066 126139066 C A TMEM132B Missense_Mutation p.S1016Y 0.16 deleterious(0) possibly_damaging(0.632) TCGA-FR-A8YC-06 12 12814886 12814886 G A GPR19 Missense_Mutation p.T166I 0.29 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 12 128899609 128899609 G A TMEM132C Missense_Mutation p.V140I 0.27 tolerated(1) benign(0.094) TCGA-FR-A8YC-06 12 129558850 129558850 C T TMEM132D Missense_Mutation p.G957E 0.59 deleterious(0.04) benign(0.157) TCGA-FR-A8YC-06 12 129558851 129558851 C A TMEM132D Missense_Mutation p.G957W 0.57 deleterious(0) probably_damaging(0.965) TCGA-FR-A8YC-06 12 12977492 12977492 C T DDX47 Missense_Mutation p.L306F 0.21 deleterious(0.03) probably_damaging(0.955) TCGA-FR-A8YC-06 12 130831058 130831058 G A PIWIL1 Missense_Mutation p.E154K 0.24 tolerated(0.4) benign(0.038) TCGA-FR-A8YC-06 12 132631876 132631876 C T NOC4L Silent p.H132H 0.33 TCGA-FR-A8YC-06 12 133244200 133244200 G T POLE Silent p.I736I 0.31 TCGA-FR-A8YC-06 12 13717090 13717090 G A GRIN2B Missense_Mutation p.P1028S 0.46 deleterious(0.04) benign(0.248) TCGA-FR-A8YC-06 12 13717420 13717420 G A GRIN2B Missense_Mutation p.P918S 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A8YC-06 12 13906462 13906462 C T GRIN2B Missense_Mutation p.D267N 0.23 deleterious(0.05) possibly_damaging(0.785) TCGA-FR-A8YC-06 12 13906688 13906688 C T GRIN2B Silent p.E191E 0.16 TCGA-FR-A8YC-06 12 14829863 14829863 C T GUCY2C Missense_Mutation p.M291I 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-FR-A8YC-06 12 15131070 15131070 G A PDE6H Missense_Mutation p.G42S 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A8YC-06 12 15661513 15661513 G A PTPRO Missense_Mutation p.G426R 0.32 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FR-A8YC-06 12 15794719 15794719 G A EPS8 Silent p.S538S 0.26 TCGA-FR-A8YC-06 12 16050824 16050824 C T STRAP Missense_Mutation p.P216L 0.45 tolerated(0.35) benign(0) TCGA-FR-A8YC-06 12 16516804 16516804 C T MGST1 Silent p.D99D 0.26 TCGA-FR-A8YC-06 12 16516935 16516935 C T MGST1 Missense_Mutation p.S143F 0.53 deleterious(0) probably_damaging(0.965) TCGA-FR-A8YC-06 12 18234100 18234100 G A RERGL 3'UTR 0.32 TCGA-FR-A8YC-06 12 18234137 18234137 C T RERGL Silent p.R202R 0.19 TCGA-FR-A8YC-06 12 18524126 18524126 C T PIK3C2G Silent p.P546P 0.39 TCGA-FR-A8YC-06 12 18544079 18544080 GG A PIK3C2G Nonsense_Mutation p.W632* 0.18 TCGA-FR-A8YC-06 12 18656346 18656346 G A PIK3C2G Missense_Mutation p.E1009K 0.75 deleterious(0) possibly_damaging(0.861) TCGA-FR-A8YC-06 12 18800939 18800939 C T PIK3C2G Missense_Mutation p.P1439S 0.41 deleterious(0.01) probably_damaging(0.946) TCGA-FR-A8YC-06 12 18891683 18891683 G A CAPZA3 Missense_Mutation p.E161K 0.29 tolerated(0.64) benign(0.002) TCGA-FR-A8YC-06 12 18891711 18891711 G A CAPZA3 Nonsense_Mutation p.W170* 0.61 TCGA-FR-A8YC-06 12 20858976 20858976 G A SLCO1C1 Missense_Mutation p.G122E 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 12 20868160 20868160 C T SLCO1C1 Missense_Mutation p.P206L 0.54 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 12 21032384 21032384 C T SLCO1B3 Missense_Mutation p.P384S 0.28 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 12 21172275 21172275 G A SLCO1B7 Missense_Mutation p.G60E 0.21 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 21175919 21175919 C T SLCO1B7 Missense_Mutation p.S159F 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-FR-A8YC-06 12 21229491 21229491 C T SLCO1B7 Missense_Mutation p.S571F 0.26 deleterious(0) probably_damaging(0.94) TCGA-FR-A8YC-06 12 21684196 21684196 C T C12orf39 3'UTR 0.40 TCGA-FR-A8YC-06 12 22025634 22025634 C T ABCC9 Missense_Mutation p.G708E 0.22 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 22025644 22025644 C T ABCC9 Missense_Mutation p.G705S 0.21 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 12 2613673 2613673 C T CACNA1C Intron 0.52 TCGA-FR-A8YC-06 12 2716176 2716176 G A CACNA1C Missense_Mutation p.G1099E 0.53 deleterious(0.02) benign(0.352) TCGA-FR-A8YC-06 12 32136057 32136057 C T KIAA1551 Missense_Mutation p.S723L 0.32 deleterious(0.04) possibly_damaging(0.765) TCGA-FR-A8YC-06 12 33003805 33003805 C T PKP2 Missense_Mutation p.E425K 0.24 tolerated(0.07) possibly_damaging(0.76) TCGA-FR-A8YC-06 12 336826 336826 C T SLC6A13 Missense_Mutation p.M280I 0.74 tolerated(0.58) possibly_damaging(0.457) TCGA-FR-A8YC-06 12 40637469 40637469 A T LRRK2 Missense_Mutation p.H275L 0.58 tolerated(0.36) benign(0.147) TCGA-FR-A8YC-06 12 40728880 40728880 C T LRRK2 Missense_Mutation p.R1957C 0.25 deleterious(0.03) probably_damaging(0.94) TCGA-FR-A8YC-06 12 42858483 42858483 A T PRICKLE1 Missense_Mutation p.S451R 0.59 tolerated(0.26) benign(0.026) TCGA-FR-A8YC-06 12 42858484 42858484 C T PRICKLE1 Missense_Mutation p.S451N 0.58 tolerated(0.53) benign(0.001) TCGA-FR-A8YC-06 12 43769866 43769866 C T ADAMTS20 Missense_Mutation p.G1769D 0.58 deleterious(0.05) probably_damaging(0.991) TCGA-FR-A8YC-06 12 45410364 45410364 C T DBX2 Missense_Mutation p.R242Q 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 12 46591721 46591721 C T SLC38A1 Silent p.K415K 0.32 TCGA-FR-A8YC-06 12 46602872 46602872 G A SLC38A1 Missense_Mutation p.S118L 0.16 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 12 4736484 4736484 G A AKAP3 Silent p.I528I 0.25 TCGA-FR-A8YC-06 12 4737114 4737114 C T AKAP3 Silent p.L318L 0.28 TCGA-FR-A8YC-06 12 47472541 47472541 A G AMIGO2 Missense_Mutation p.L82P 0.27 tolerated(0.2) benign(0.026) TCGA-FR-A8YC-06 12 48251443 48251443 C T VDR Silent p.R152R 0.44 TCGA-FR-A8YC-06 12 48371881 48371881 C T COL2A1 Missense_Mutation p.G1008D 0.59 unknown(0) TCGA-FR-A8YC-06 12 48393754 48393754 G A COL2A1 Silent p.I80I 0.60 TCGA-FR-A8YC-06 12 48866516 48866516 C T ANP32D Silent p.F23F 0.32 TCGA-FR-A8YC-06 12 48866733 48866733 A G ANP32D Missense_Mutation p.S96G 0.29 deleterious(0.01) possibly_damaging(0.868) TCGA-FR-A8YC-06 12 48919819 48919819 C T OR8S1 Silent p.I135I 0.53 TCGA-FR-A8YC-06 12 4919895 4919895 G A KCNA6 Missense_Mutation p.D230N 0.56 tolerated(0.44) benign(0.002) TCGA-FR-A8YC-06 12 49391303 49391303 G A DDN Silent p.V452V 0.30 TCGA-FR-A8YC-06 12 49745241 49745241 G A DNAJC22 Missense_Mutation p.E328K 0.35 tolerated(0.12) benign(0.12) TCGA-FR-A8YC-06 12 49937109 49937109 C T KCNH3 Missense_Mutation p.R211W 0.59 deleterious(0) probably_damaging(0.937) TCGA-FR-A8YC-06 12 50586307 50586307 G A LIMA1 Silent p.V357V 0.45 TCGA-FR-A8YC-06 12 51279140 51279140 G A TMPRSS12 Missense_Mutation p.G255D 0.24 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 12 51685410 51685410 C T BIN2 Missense_Mutation p.E494K 0.24 deleterious_low_confidence(0) possibly_damaging(0.64) TCGA-FR-A8YC-06 12 51868192 51868192 C T SLC4A8 Silent p.I657I 0.62 TCGA-FR-A8YC-06 12 51882516 51882516 C T SLC4A8 Missense_Mutation p.P774S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 51888848 51888848 C T SLC4A8 Silent p.L963L 0.27 TCGA-FR-A8YC-06 12 52308329 52308329 G A ACVRL1 Silent p.E244E 0.47 TCGA-FR-A8YC-06 12 52565053 52565053 C T KRT80 3'UTR 0.43 TCGA-FR-A8YC-06 12 52566944 52566944 C T KRT80 Missense_Mutation p.E279K 0.62 deleterious(0.04) benign(0.15) TCGA-FR-A8YC-06 12 52790793 52790793 C A KRT82 Splice_Site p.X315_splice 0.35 TCGA-FR-A8YC-06 12 52818224 52818224 G A KRT75 3'UTR 0.22 TCGA-FR-A8YC-06 12 53007517 53007517 G A KRT73 Silent p.I313I 0.18 TCGA-FR-A8YC-06 12 53041583 53041583 C T KRT2 Silent p.K393K 0.43 TCGA-FR-A8YC-06 12 53068902 53068902 G A KRT1 3'UTR 0.52 TCGA-FR-A8YC-06 12 53086333 53086333 C T KRT77 Silent p.E433E 0.16 TCGA-FR-A8YC-06 12 53241791 53241791 C T KRT78 Missense_Mutation p.D167N 0.42 tolerated(0.54) benign(0.229) TCGA-FR-A8YC-06 12 53343200 53343200 G A KRT18 Silent p.K81K 0.62 TCGA-FR-A8YC-06 12 53722600 53722600 G A SP7 Missense_Mutation p.P209L 0.22 tolerated(0.22) benign(0.031) TCGA-FR-A8YC-06 12 53825144 53825144 C T AMHR2 Missense_Mutation p.P537S 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-FR-A8YC-06 12 54106595 54106595 G A CALCOCO1 Intron 0.41 TCGA-FR-A8YC-06 12 54383261 54383261 C T HOXC10 3'UTR 0.46 TCGA-FR-A8YC-06 12 54797718 54797718 C T ITGA5 Missense_Mutation p.G533E 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 12 54803292 54803292 G A ITGA5 Nonsense_Mutation p.R147* 0.20 TCGA-FR-A8YC-06 12 54894347 54894347 G A NCKAP1L Missense_Mutation p.A82T 0.60 tolerated(0.27) benign(0.001) TCGA-FR-A8YC-06 12 55420874 55420874 G A NEUROD4 Missense_Mutation p.M217I 0.57 tolerated(0.13) benign(0.006) TCGA-FR-A8YC-06 12 55421132 55421132 C T NEUROD4 Silent p.P303P 0.51 TCGA-FR-A8YC-06 12 55524102 55524102 C T OR9K2 Nonsense_Mutation p.Q184* 0.55 TCGA-FR-A8YC-06 12 55715112 55715112 G A OR6C1 Missense_Mutation p.M243I 0.62 deleterious_low_confidence(0.03) benign(0.084) TCGA-FR-A8YC-06 12 55715289 55715289 G A OR6C1 Missense_Mutation p.M302I 0.28 tolerated_low_confidence(0.2) benign(0.003) TCGA-FR-A8YC-06 12 55759618 55759618 C T OR6C75 Missense_Mutation p.H242Y 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A8YC-06 12 55794969 55794969 C T OR6C65 Silent p.I219I 0.60 TCGA-FR-A8YC-06 12 55846190 55846190 T C OR6C2 Missense_Mutation p.S65P 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A8YC-06 12 56082085 56082085 C T ITGA7 Splice_Site p.X991_splice 0.29 TCGA-FR-A8YC-06 12 56232471 56232471 G A MMP19 Silent p.L272L 0.35 TCGA-FR-A8YC-06 12 56525302 56525302 G A ESYT1 Silent p.G252G 0.26 TCGA-FR-A8YC-06 12 56620140 56620140 G A NABP2 Missense_Mutation p.V125M 0.05 deleterious(0.04) benign(0.026) TCGA-FR-A8YC-06 12 56625226 56625226 G A SLC39A5 Silent p.G56G 0.56 TCGA-FR-A8YC-06 12 57003945 57003945 G A BAZ2A Missense_Mutation p.P614S 0.22 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 12 57111400 57111400 G T NACA Intron 0.33 TCGA-FR-A8YC-06 12 57114353 57114353 G A NACA Nonsense_Mutation p.Q321* 0.27 TCGA-FR-A8YC-06 12 57487223 57487223 C T NAB2 Missense_Mutation p.P437L 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-FR-A8YC-06 12 57578706 57578706 C T LRP1 Silent p.L2091L 0.56 TCGA-FR-A8YC-06 12 57589097 57589097 C T LRP1 Silent p.T2784T 0.24 TCGA-FR-A8YC-06 12 57865411 57865411 C T GLI1 Missense_Mutation p.S963F 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.677) TCGA-FR-A8YC-06 12 57974849 57974849 G A KIF5A Silent p.K883K 0.29 TCGA-FR-A8YC-06 12 58174322 58174322 T C METTL21B Missense_Mutation p.F192L 0.58 tolerated(0.11) possibly_damaging(0.715) TCGA-FR-A8YC-06 12 5841763 5841763 G A ANO2 Nonsense_Mutation p.R490* 0.37 TCGA-FR-A8YC-06 12 6204505 6204505 G A VWF Intron 0.17 TCGA-FR-A8YC-06 12 63195659 63195659 G A PPM1H Silent p.T231T 0.43 TCGA-FR-A8YC-06 12 63195660 63195660 G A PPM1H Missense_Mutation p.T231I 0.43 tolerated(0.42) benign(0.093) TCGA-FR-A8YC-06 12 64841967 64841967 G A XPOT 3'UTR 0.27 TCGA-FR-A8YC-06 12 66151965 66151965 C T RPSAP52 RNA 0.50 TCGA-FR-A8YC-06 12 662582 662582 C T B4GALNT3 Missense_Mutation p.S498F 0.23 deleterious(0.05) benign(0.11) TCGA-FR-A8YC-06 12 662955 662955 C A B4GALNT3 Missense_Mutation p.F622L 0.21 tolerated(0.19) benign(0.014) TCGA-FR-A8YC-06 12 66308887 66308887 A T HMGA2 Intron 0.27 TCGA-FR-A8YC-06 12 6680121 6680121 G A CHD4 Missense_Mutation p.P1879S 0.53 tolerated(0.07) probably_damaging(0.996) TCGA-FR-A8YC-06 12 6972534 6972534 T C USP5 Silent p.S649S 0.27 TCGA-FR-A8YC-06 12 70206795 70206795 C T RAB3IP Missense_Mutation p.L444F 0.56 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 12 70964825 70964825 G A PTPRB Silent p.A1117A 0.23 TCGA-FR-A8YC-06 12 71029623 71029623 C T PTPRB Nonsense_Mutation p.W93* 0.53 TCGA-FR-A8YC-06 12 71551549 71551549 G A TSPAN8 5'UTR 0.21 TCGA-FR-A8YC-06 12 71977944 71977944 G A LGR5 Silent p.G718G 0.26 TCGA-FR-A8YC-06 12 72050705 72050705 T C ZFC3H1 Silent p.K325K 0.25 TCGA-FR-A8YC-06 12 7242060 7242060 C T C1R Silent p.T198T 0.53 TCGA-FR-A8YC-06 12 73056952 73056952 T C TRHDE Silent p.L1018L 0.29 TCGA-FR-A8YC-06 12 75444294 75444294 G A KCNC2 Silent p.I497I 0.60 TCGA-FR-A8YC-06 12 7651641 7651641 C T CD163 Missense_Mutation p.E201K 0.53 tolerated(0.07) benign(0.033) TCGA-FR-A8YC-06 12 76791507 76791507 G A OSBPL8 Silent p.F213F 0.62 TCGA-FR-A8YC-06 12 7981344 7981344 C T SLC2A14 Missense_Mutation p.R234K 0.55 tolerated(0.11) probably_damaging(0.992) TCGA-FR-A8YC-06 12 7981396 7981396 G A SLC2A14 Missense_Mutation p.L217F 0.55 tolerated(0.05) benign(0.04) TCGA-FR-A8YC-06 12 79988153 79988153 C T PAWR Missense_Mutation p.E298K 0.19 deleterious(0.01) probably_damaging(0.941) TCGA-FR-A8YC-06 12 80730315 80730315 G A OTOGL Missense_Mutation p.E1566K 0.18 tolerated(0.44) benign(0.389) TCGA-FR-A8YC-06 12 80770945 80770945 C T OTOGL Missense_Mutation p.S2266L 0.52 deleterious(0.03) benign(0.29) TCGA-FR-A8YC-06 12 81101627 81101627 C T MYF6 Silent p.P43P 0.21 TCGA-FR-A8YC-06 12 81111152 81111152 G A MYF5 Missense_Mutation p.E104K 0.24 deleterious(0) benign(0.446) TCGA-FR-A8YC-06 12 81688676 81688676 G A PPFIA2 Nonsense_Mutation p.R955* 0.61 TCGA-FR-A8YC-06 12 81688715 81688715 C T PPFIA2 Missense_Mutation p.E942K 0.21 deleterious(0.01) possibly_damaging(0.505) TCGA-FR-A8YC-06 12 81741327 81741327 C T PPFIA2 Missense_Mutation p.M739I 0.21 tolerated(0.05) benign(0.017) TCGA-FR-A8YC-06 12 8374435 8374435 C T FAM90A1 Missense_Mutation p.D460N 0.32 tolerated(0.27) unknown(0) TCGA-FR-A8YC-06 12 8375299 8375299 C T FAM90A1 Missense_Mutation p.E172K 0.54 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 12 85257249 85257249 G A SLC6A15 Missense_Mutation p.P596L 0.54 tolerated(0.07) possibly_damaging(0.907) TCGA-FR-A8YC-06 12 8671605 8671605 G A CLEC4D Missense_Mutation p.G78E 0.58 tolerated(0.15) benign(0.266) TCGA-FR-A8YC-06 12 88442135 88442135 A T C12orf29 Missense_Mutation p.N305I 0.27 tolerated(0.19) benign(0.203) TCGA-FR-A8YC-06 12 8975954 8975954 C T A2ML1 Missense_Mutation p.S80F 0.51 deleterious(0) probably_damaging(0.96) TCGA-FR-A8YC-06 12 91445215 91445215 G A KERA Missense_Mutation p.R323C 0.24 deleterious(0) possibly_damaging(0.564) TCGA-FR-A8YC-06 12 91449522 91449522 C T KERA Silent p.V179V 0.23 TCGA-FR-A8YC-06 12 91449921 91449921 A T KERA Nonsense_Mutation p.C46* 0.30 TCGA-FR-A8YC-06 12 9322074 9322074 G A PZP Silent p.I651I 0.51 TCGA-FR-A8YC-06 12 95456394 95456394 G A NR2C1 Silent p.L59L 0.18 TCGA-FR-A8YC-06 12 97073462 97073462 C T C12orf55 Missense_Mutation p.S1883F 0.59 deleterious(0) benign(0) TCGA-FR-A8YC-06 12 97078920 97078920 C T C12orf55 Missense_Mutation p.S1973L 0.33 deleterious(0.04) benign(0.065) TCGA-FR-A8YC-06 12 97345837 97345837 C T NEDD1 3'UTR 0.27 TCGA-FR-A8YC-06 12 988750 988750 C T WNK1 Silent p.S795S 0.34 TCGA-FR-A8YC-06 12 98926673 98926673 C T TMPO Missense_Mutation p.P213L 0.58 deleterious_low_confidence(0) benign(0.154) TCGA-FR-A8YC-06 12 990105 990105 C T WNK1 Silent p.S1017S 0.58 TCGA-FR-A8YC-06 12 99793421 99793421 T C ANKS1B Missense_Mutation p.T582A 0.26 tolerated(0.8) benign(0) TCGA-FR-A8YC-06 13 102227817 102227817 G A ITGBL1 Missense_Mutation p.G169E 0.30 deleterious(0.03) benign(0.022) TCGA-FR-A8YC-06 13 102345015 102345015 C T ITGBL1 Missense_Mutation p.R366C 0.38 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-FR-A8YC-06 13 102367923 102367923 A G ITGBL1 Missense_Mutation p.I468M 0.53 tolerated(0.23) benign(0.181) TCGA-FR-A8YC-06 13 103492340 103492340 A T BIVM 3'UTR 0.55 TCGA-FR-A8YC-06 13 103703705 103703705 G A SLC10A2 Silent p.I221I 0.11 TCGA-FR-A8YC-06 13 108518049 108518049 G A FAM155A Missense_Mutation p.S299F 0.28 deleterious(0.03) probably_damaging(0.955) TCGA-FR-A8YC-06 13 111102738 111102738 G A COL4A2 Missense_Mutation p.G426R 0.41 probably_damaging(1) TCGA-FR-A8YC-06 13 111102771 111102771 C T COL4A2 Missense_Mutation p.P437S 0.48 possibly_damaging(0.843) TCGA-FR-A8YC-06 13 114193713 114193713 C T TMCO3 Silent p.F527F 0.22 TCGA-FR-A8YC-06 13 19748108 19748108 C T TUBA3C Silent p.G416G 0.29 TCGA-FR-A8YC-06 13 20067592 20067592 C T TPTE2 Missense_Mutation p.E21K 0.46 tolerated_low_confidence(0.42) benign(0.026) TCGA-FR-A8YC-06 13 21417936 21417936 G A XPO4 Silent p.F182F 0.43 TCGA-FR-A8YC-06 13 23905578 23905578 G A SACS Missense_Mutation p.S4146L 0.35 probably_damaging(0.978) TCGA-FR-A8YC-06 13 23906634 23906634 A G SACS Missense_Mutation p.V3794A 0.47 benign(0.051) TCGA-FR-A8YC-06 13 23909911 23909911 G A SACS Missense_Mutation p.L2702F 0.35 probably_damaging(0.998) TCGA-FR-A8YC-06 13 25016790 25016790 T A PARP4 Nonsense_Mutation p.K1161* 0.13 TCGA-FR-A8YC-06 13 25265203 25265203 G A ATP12A Missense_Mutation p.E301K 0.34 tolerated(0.12) benign(0.402) TCGA-FR-A8YC-06 13 25418026 25418026 G A RNF17 Silent p.K916K 0.43 TCGA-FR-A8YC-06 13 25440292 25440292 C T RNF17 Missense_Mutation p.S1371L 0.31 tolerated(0.34) benign(0.012) TCGA-FR-A8YC-06 13 26535771 26535771 C T ATP8A2 Missense_Mutation p.A1081V 0.17 tolerated(1) benign(0.004) TCGA-FR-A8YC-06 13 26620710 26620710 G A SHISA2 Nonsense_Mutation p.Q277* 0.22 TCGA-FR-A8YC-06 13 28578189 28578189 C T FLT3 Silent p.%3D 0.55 TCGA-FR-A8YC-06 13 28623858 28623858 C T FLT3 Missense_Mutation p.E266K 0.17 deleterious(0) probably_damaging(0.99) TCGA-FR-A8YC-06 13 28841240 28841240 C T PAN3 Missense_Mutation p.L528F 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-FR-A8YC-06 13 31531070 31531070 C T TEX26 Missense_Mutation p.P125S 0.40 tolerated(0.08) possibly_damaging(0.604) TCGA-FR-A8YC-06 13 31549000 31549000 C T TEX26 Missense_Mutation p.R276C 0.17 deleterious(0.04) benign(0.286) TCGA-FR-A8YC-06 13 31549009 31549009 C T TEX26 Missense_Mutation p.R279C 0.42 tolerated(0.09) benign(0.015) TCGA-FR-A8YC-06 13 32363318 32363318 A G RXFP2 Missense_Mutation p.N378S 0.13 deleterious(0.03) benign(0.128) TCGA-FR-A8YC-06 13 32913868 32913868 C T BRCA2 Silent p.S1792S 0.35 TCGA-FR-A8YC-06 13 33095579 33095579 C T N4BP2L2 Missense_Mutation p.G65E 0.44 deleterious(0) benign(0.237) TCGA-FR-A8YC-06 13 33635239 33635239 C T KL Nonsense_Mutation p.Q675* 0.19 TCGA-FR-A8YC-06 13 35630180 35630180 C T NBEA Nonsense_Mutation p.R336* 0.41 TCGA-FR-A8YC-06 13 35756572 35756572 C T NBEA Missense_Mutation p.R1580C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 13 35770271 35770271 C T NBEA Missense_Mutation p.S1733F 0.55 tolerated_low_confidence(0.07) benign(0.091) TCGA-FR-A8YC-06 13 36167372 36167372 C T NBEA Intron 0.40 TCGA-FR-A8YC-06 13 37399646 37399646 G A RFXAP Missense_Mutation p.E228K 0.23 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 13 37453892 37453892 G A SMAD9 5'UTR 0.41 TCGA-FR-A8YC-06 13 38320186 38320186 G A TRPC4 Missense_Mutation p.S262F 0.35 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 13 38320586 38320586 G T TRPC4 Missense_Mutation p.P129T 0.47 tolerated(0.46) benign(0.005) TCGA-FR-A8YC-06 13 39424352 39424352 C T FREM2 Missense_Mutation p.S2186F 0.50 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A8YC-06 13 39454985 39454985 T C FREM2 3'UTR 0.47 TCGA-FR-A8YC-06 13 39540967 39540967 C T STOML3 Missense_Mutation p.A291T 0.17 deleterious_low_confidence(0.01) benign(0.045) TCGA-FR-A8YC-06 13 41525477 41525477 C T ELF1 Missense_Mutation p.E117K 0.35 deleterious(0) benign(0.354) TCGA-FR-A8YC-06 13 41533090 41533090 G A ELF1 Silent p.L45L 0.58 TCGA-FR-A8YC-06 13 41556218 41556218 G A ELF1 5'UTR 0.46 TCGA-FR-A8YC-06 13 41767909 41767909 G A KBTBD7 Missense_Mutation p.S162F 0.44 deleterious(0.01) probably_damaging(0.936) TCGA-FR-A8YC-06 13 42142408 42142408 G A VWA8 Silent p.F1881F 0.38 TCGA-FR-A8YC-06 13 42273337 42273337 C T VWA8 Missense_Mutation p.G1145E 0.17 tolerated(0.17) benign(0.005) TCGA-FR-A8YC-06 13 42701674 42701674 C T DGKH Nonsense_Mutation p.R90* 0.30 TCGA-FR-A8YC-06 13 43180872 43180872 G A TNFSF11 Missense_Mutation p.G258R 0.51 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 13 43180898 43180898 G A TNFSF11 Silent p.G266G 0.54 TCGA-FR-A8YC-06 13 43181149 43181149 A T TNFSF11 3'UTR 0.32 TCGA-FR-A8YC-06 13 46942230 46942230 G A KIAA0226L Missense_Mutation p.T258I 0.15 tolerated(0.09) benign(0.176) TCGA-FR-A8YC-06 13 47011968 47011968 G A PPP1R2P4 RNA 0.52 TCGA-FR-A8YC-06 13 50204595 50204595 G A ARL11 Silent p.V4V 0.40 TCGA-FR-A8YC-06 13 52301880 52301880 G A WDFY2 Silent p.L184L 0.37 TCGA-FR-A8YC-06 13 52520522 52520522 G A ATP7B Silent p.S986S 0.44 TCGA-FR-A8YC-06 13 58298865 58298865 C T PCDH17 Missense_Mutation p.L973F 0.40 deleterious(0.01) benign(0.347) TCGA-FR-A8YC-06 13 58299493 58299493 C T PCDH17 3'UTR 0.15 TCGA-FR-A8YC-06 13 67800737 67800737 T C PCDH9 Silent p.L612L 0.30 TCGA-FR-A8YC-06 13 67801997 67801997 G A PCDH9 Silent p.I192I 0.48 TCGA-FR-A8YC-06 13 75860890 75860890 T A TBC1D4 3'UTR 0.24 TCGA-FR-A8YC-06 13 77695624 77695624 G A MYCBP2 Missense_Mutation p.A2637V 0.38 benign(0) TCGA-FR-A8YC-06 13 78187064 78187064 C T SCEL Missense_Mutation p.S459L 0.17 deleterious(0.04) benign(0.056) TCGA-FR-A8YC-06 13 84455114 84455114 C T SLITRK1 Missense_Mutation p.V177M 0.48 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 13 92797083 92797083 T C GPC5 Silent p.L468L 0.29 TCGA-FR-A8YC-06 13 95131531 95131531 C T DCT 5'UTR 0.76 TCGA-FR-A8YC-06 13 97639189 97639189 G A OXGR1 Silent p.S275S 0.49 TCGA-FR-A8YC-06 13 99061688 99061688 C T FARP1 Missense_Mutation p.P504L 0.49 tolerated(0.19) benign(0.167) TCGA-FR-A8YC-06 13 99093045 99093045 C T FARP1 Silent p.H917H 0.29 TCGA-FR-A8YC-06 13 99356560 99356560 G A SLC15A1 Missense_Mutation p.P467S 0.25 tolerated(0.24) benign(0.014) TCGA-FR-A8YC-06 13 99462456 99462456 G A DOCK9 Silent p.I1740I 0.38 TCGA-FR-A8YC-06 13 99554744 99554744 A G DOCK9 Missense_Mutation p.V393A 0.21 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 14 100344907 100344907 C T EML1 Missense_Mutation p.R176C 0.66 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 14 100576066 100576066 C T EVL Intron 0.50 TCGA-FR-A8YC-06 14 100795217 100795217 G A SLC25A47 Missense_Mutation p.G161E 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 14 100992234 100992234 C T WDR25 Nonsense_Mutation p.Q377* 0.47 TCGA-FR-A8YC-06 14 101341432 101341432 C TT MIR665 RNA 0.26 TCGA-FR-A8YC-06 14 101348285 101348285 G A RTL1 Silent p.I947I 0.19 TCGA-FR-A8YC-06 14 101420723 101420723 G A SNORD114-4 RNA 0.17 TCGA-FR-A8YC-06 14 101442202 101442202 G A SNORD114-18 RNA 0.30 TCGA-FR-A8YC-06 14 101512287 101512287 C T MIR381 RNA 0.22 TCGA-FR-A8YC-06 14 102348536 102348536 C T PPP2R5C Silent p.S142S 0.42 TCGA-FR-A8YC-06 14 102452060 102452060 C T DYNC1H1 Missense_Mutation p.P500S 0.11 benign(0.004) TCGA-FR-A8YC-06 14 102500498 102500498 C T DYNC1H1 Silent p.S3533S 0.55 TCGA-FR-A8YC-06 14 102807695 102807695 C T ZNF839 Missense_Mutation p.R655C 0.33 tolerated(0.18) benign(0.007) TCGA-FR-A8YC-06 14 102910031 102910031 C T TECPR2 Missense_Mutation p.P934S 0.22 tolerated(0.15) benign(0.04) TCGA-FR-A8YC-06 14 105415060 105415060 C T AHNAK2 Missense_Mutation p.S2243N 0.54 benign(0.188) TCGA-FR-A8YC-06 14 105420056 105420056 C T AHNAK2 Missense_Mutation p.G578R 0.29 benign(0.037) TCGA-FR-A8YC-06 14 105420283 105420283 G A AHNAK2 Missense_Mutation p.P502L 0.16 possibly_damaging(0.754) TCGA-FR-A8YC-06 14 105420698 105420698 C T AHNAK2 Missense_Mutation p.D364N 0.26 possibly_damaging(0.61) TCGA-FR-A8YC-06 14 105693012 105693012 G A BRF1 Missense_Mutation p.P292S 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 14 105818729 105818729 C T PACS2 Silent p.I74I 0.21 TCGA-FR-A8YC-06 14 106321299 106321299 G A IGHM Silent p.S230S 0.49 TCGA-FR-A8YC-06 14 106471358 106471358 G A IGHV1-3 Missense_Mutation p.S80L 0.22 tolerated(0.08) benign(0.003) TCGA-FR-A8YC-06 14 106539495 106539495 G A IGHV1-8 Silent p.I7I 0.26 TCGA-FR-A8YC-06 14 106758048 106758048 G A IGHV2-26 Silent p.S15S 0.52 TCGA-FR-A8YC-06 14 106791237 106791237 G A IGHV3-30 Missense_Mutation p.S40F 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FR-A8YC-06 14 106963033 106963033 G A IGHV1-45 Silent p.F83F 0.45 TCGA-FR-A8YC-06 14 106967197 106967197 C T IGHV1-46 Missense_Mutation p.G68E 0.64 deleterious(0.01) possibly_damaging(0.496) TCGA-FR-A8YC-06 14 107083417 107083417 C T IGHV4-59 Missense_Mutation p.G63R 0.53 deleterious_low_confidence(0.03) possibly_damaging(0.576) TCGA-FR-A8YC-06 14 107178951 107178951 C T IGHV2-70 Missense_Mutation p.D76N 0.17 deleterious(0.04) benign(0.048) TCGA-FR-A8YC-06 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.58 deleterious(0.01) possibly_damaging(0.461) TCGA-FR-A8YC-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.03 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FR-A8YC-06 14 19553590 19553590 G A POTEG Silent p.R58R 0.04 TCGA-FR-A8YC-06 14 19553623 19553623 C T POTEG Silent p.F69F 0.03 TCGA-FR-A8YC-06 14 19573100 19573100 G A POTEG Missense_Mutation p.E400K 0.15 tolerated(1) benign(0) TCGA-FR-A8YC-06 14 20020176 20020176 C T POTEM Silent p.K15K 0.10 TCGA-FR-A8YC-06 14 20248479 20248479 G A OR4M1 5'UTR 0.17 TCGA-FR-A8YC-06 14 20248736 20248736 C T OR4M1 Silent p.F85F 0.17 TCGA-FR-A8YC-06 14 20296445 20296445 C T OR4N2 Missense_Mutation p.P280S 0.18 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 14 20344960 20344960 C T OR4K2 Silent p.F178F 0.27 TCGA-FR-A8YC-06 14 20345281 20345281 A T OR4K2 Silent p.I285I 0.35 TCGA-FR-A8YC-06 14 20403974 20403974 C T OR4K1 Missense_Mutation p.S50F 0.18 tolerated(0.14) benign(0.001) TCGA-FR-A8YC-06 14 20404575 20404575 C T OR4K1 Silent p.F250F 0.18 TCGA-FR-A8YC-06 14 20404636 20404636 C T OR4K1 Missense_Mutation p.L271F 0.12 deleterious(0.03) possibly_damaging(0.827) TCGA-FR-A8YC-06 14 20443707 20443707 C T OR4K15 Silent p.F10F 0.14 TCGA-FR-A8YC-06 14 20502796 20502796 C T OR4K13 Missense_Mutation p.G41E 0.45 deleterious(0) probably_damaging(0.95) TCGA-FR-A8YC-06 14 20692396 20692396 C T OR11H6 Silent p.V176V 0.28 TCGA-FR-A8YC-06 14 20841949 20841949 C A TEP1 Silent p.V2164V 0.16 TCGA-FR-A8YC-06 14 20841951 20841951 C A TEP1 Missense_Mutation p.V2164L 0.16 tolerated(0.09) benign(0.225) TCGA-FR-A8YC-06 14 21058511 21058511 G A RNASE12 Silent p.S124S 0.27 TCGA-FR-A8YC-06 14 21469787 21469787 C T SLC39A2 3'UTR 0.10 TCGA-FR-A8YC-06 14 21623766 21623766 C T OR5AU1 Missense_Mutation p.R140K 0.33 tolerated(0.63) benign(0.001) TCGA-FR-A8YC-06 14 21870274 21870274 C T CHD8 Missense_Mutation p.E1302K 0.26 deleterious(0) probably_damaging(0.98) TCGA-FR-A8YC-06 14 21990357 21990357 A C SALL2 3'UTR 0.29 TCGA-FR-A8YC-06 14 22102903 22102903 G A OR10G2 Silent p.F32F 0.38 TCGA-FR-A8YC-06 14 22102951 22102951 G A OR10G2 Silent p.F16F 0.37 TCGA-FR-A8YC-06 14 22356646 22356646 C T TRAV12-2 Missense_Mutation p.P102S 0.20 deleterious(0.04) benign(0.359) TCGA-FR-A8YC-06 14 22555014 22555014 C T TRAV23DV6 Missense_Mutation p.S47L 0.30 deleterious(0.04) benign(0.072) TCGA-FR-A8YC-06 14 22555081 22555081 G A TRAV23DV6 Silent p.G69G 0.33 TCGA-FR-A8YC-06 14 22573892 22573892 G A TRAV24 Missense_Mutation p.G38R 0.50 tolerated(0.15) possibly_damaging(0.905) TCGA-FR-A8YC-06 14 22690207 22690207 G A TRAV35 Missense_Mutation p.E56K 0.57 tolerated(1) benign(0.002) TCGA-FR-A8YC-06 14 22694925 22694925 C T TRAV36DV7 Missense_Mutation p.T39I 0.40 tolerated(0.18) benign(0.026) TCGA-FR-A8YC-06 14 23511930 23511930 G A PSMB11 Missense_Mutation p.D166N 0.25 tolerated(0.21) probably_damaging(0.999) TCGA-FR-A8YC-06 14 23862911 23862911 G A MYH6 Silent p.A964A 0.41 TCGA-FR-A8YC-06 14 24114377 24114377 G A DHRS2 Missense_Mutation p.E257K 0.33 tolerated(0.13) benign(0.248) TCGA-FR-A8YC-06 14 24590119 24590119 A T DCAF11 Missense_Mutation p.S389C 0.39 deleterious(0.04) benign(0.027) TCGA-FR-A8YC-06 14 24608205 24608205 C A EMC9 3'UTR 0.32 TCGA-FR-A8YC-06 14 24608206 24608206 C A EMC9 3'UTR 0.32 TCGA-FR-A8YC-06 14 24619915 24619915 A T RNF31 Missense_Mutation p.S436C 0.49 tolerated(0.18) possibly_damaging(0.886) TCGA-FR-A8YC-06 14 24619950 24619950 C T RNF31 Silent p.P447P 0.37 TCGA-FR-A8YC-06 14 24794633 24794633 G A ADCY4 Silent p.T591T 0.24 TCGA-FR-A8YC-06 14 24884070 24884070 C T NYNRIN Silent p.L1039L 0.41 TCGA-FR-A8YC-06 14 24884094 24884094 C T NYNRIN Missense_Mutation p.P1047S 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-FR-A8YC-06 14 24901147 24901147 C T KHNYN Missense_Mutation p.P227L 0.27 tolerated(0.79) benign(0.001) TCGA-FR-A8YC-06 14 26939638 26939638 G A NOVA1 Intron 0.10 TCGA-FR-A8YC-06 14 31576273 31576273 G T HECTD1 Missense_Mutation p.P2269T 0.10 tolerated(0.08) probably_damaging(0.997) TCGA-FR-A8YC-06 14 31844051 31844051 G A HEATR5A Missense_Mutation p.T318I 0.54 deleterious(0.03) probably_damaging(0.955) TCGA-FR-A8YC-06 14 34269586 34269586 C T NPAS3 Silent p.F691F 0.52 TCGA-FR-A8YC-06 14 35483976 35483976 G A SRP54 Missense_Mutation p.D305N 0.15 tolerated(0.22) benign(0.005) TCGA-FR-A8YC-06 14 36103909 36103909 G A RALGAPA1 Missense_Mutation p.P1450S 0.19 tolerated(0.76) probably_damaging(0.999) TCGA-FR-A8YC-06 14 38723952 38723952 G A CLEC14A Missense_Mutation p.H426Y 0.28 deleterious(0) possibly_damaging(0.635) TCGA-FR-A8YC-06 14 45665542 45665542 C T FANCM Silent p.S1836S 0.45 TCGA-FR-A8YC-06 14 52741520 52741520 C T PTGDR Silent p.L306L 0.18 TCGA-FR-A8YC-06 14 52741521 52741521 C T PTGDR Nonsense_Mutation p.R307* 0.18 TCGA-FR-A8YC-06 14 53194231 53194231 C T PSMC6 Missense_Mutation p.R370C 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 14 58036659 58036659 C T SLC35F4 Missense_Mutation p.E361K 0.72 deleterious(0.01) possibly_damaging(0.606) TCGA-FR-A8YC-06 14 58831662 58831662 T C ARID4A Missense_Mutation p.I952T 0.17 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 14 59113930 59113930 C T DACT1 3'Flank 0.57 TCGA-FR-A8YC-06 14 60072170 60072170 C T RTN1 Silent p.T676T 0.18 TCGA-FR-A8YC-06 14 60212496 60212496 G T RTN1 Silent p.V315V 0.27 TCGA-FR-A8YC-06 14 60936309 60936309 G A C14orf39 Missense_Mutation p.S206L 0.14 deleterious(0) possibly_damaging(0.765) TCGA-FR-A8YC-06 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.22 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FR-A8YC-06 14 63174974 63174974 G A KCNH5 Missense_Mutation p.S740F 0.15 deleterious(0.03) benign(0.034) TCGA-FR-A8YC-06 14 63179401 63179401 C T KCNH5 Intron 0.24 TCGA-FR-A8YC-06 14 63316429 63316429 C G KCNH5 Missense_Mutation p.R504P 0.35 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 14 63483582 63483582 C T KCNH5 Missense_Mutation p.R55Q 0.57 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 14 64608087 64608087 C T SYNE2 Missense_Mutation p.S5002F 0.59 probably_damaging(0.999) TCGA-FR-A8YC-06 14 65260395 65260395 G A SPTB Silent p.S662S 0.25 TCGA-FR-A8YC-06 14 65267582 65267582 G A SPTB Silent p.V256V 0.15 TCGA-FR-A8YC-06 14 67647586 67647586 A G GPHN Missense_Mutation p.K748E 0.37 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A8YC-06 14 68189342 68189342 G A RDH12 5'UTR 0.39 TCGA-FR-A8YC-06 14 69701576 69701576 C T EXD2 Nonsense_Mutation p.R293* 0.64 TCGA-FR-A8YC-06 14 70713948 70713948 C T ADAM21P1 RNA 0.62 TCGA-FR-A8YC-06 14 70793030 70793030 G A COX16 3'UTR 0.50 TCGA-FR-A8YC-06 14 70925061 70925061 G A ADAM21 Nonsense_Mutation p.W282* 0.62 TCGA-FR-A8YC-06 14 72176220 72176220 C T SIPA1L1 Silent p.I1370I 0.27 TCGA-FR-A8YC-06 14 73029168 73029168 C T RGS6 Missense_Mutation p.S489F 0.34 deleterious_low_confidence(0) benign(0.009) TCGA-FR-A8YC-06 14 73725704 73725704 G A PAPLN Missense_Mutation p.D522N 0.35 tolerated(0.06) benign(0.315) TCGA-FR-A8YC-06 14 73733430 73733430 G A PAPLN Splice_Site p.X1104_splice 0.55 TCGA-FR-A8YC-06 14 73733431 73733431 G A PAPLN Missense_Mutation p.G1104E 0.56 deleterious(0.03) benign(0.209) TCGA-FR-A8YC-06 14 74823702 74823702 G A VRTN Silent p.R72R 0.57 TCGA-FR-A8YC-06 14 74973894 74973894 C T LTBP2 Missense_Mutation p.G1299R 0.54 tolerated(0.15) benign(0.172) TCGA-FR-A8YC-06 14 76099969 76099969 C T FLVCR2 Intron 0.21 TCGA-FR-A8YC-06 14 76452105 76452105 G A IFT43 5'Flank 0.15 TCGA-FR-A8YC-06 14 76964686 76964686 T C ESRRB Missense_Mutation p.L396P 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 14 77908987 77908987 A T VIPAS39 Missense_Mutation p.L217Q 0.57 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 14 79175572 79175572 A T NRXN3 Missense_Mutation p.N39Y 0.54 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 14 81421956 81421956 A G TSHR 5'UTR 0.60 TCGA-FR-A8YC-06 14 91804448 91804448 G A CCDC88C Silent p.S317S 0.29 TCGA-FR-A8YC-06 14 92054395 92054395 C T CATSPERB Missense_Mutation p.R995K 0.20 tolerated(1) benign(0) TCGA-FR-A8YC-06 14 92091257 92091257 C T CATSPERB Missense_Mutation p.G613R 0.18 tolerated(0.14) possibly_damaging(0.452) TCGA-FR-A8YC-06 14 92436155 92436155 G A TRIP11 Silent p.N1934N 0.31 TCGA-FR-A8YC-06 14 92953078 92953078 G A SLC24A4 Silent p.G497G 0.20 TCGA-FR-A8YC-06 14 93712618 93712618 G A BTBD7 Silent p.F712F 0.18 TCGA-FR-A8YC-06 14 94405658 94405658 G A ASB2 Silent p.I471I 0.54 TCGA-FR-A8YC-06 14 94718111 94718111 G A PPP4R4 Nonsense_Mutation p.W581* 0.27 TCGA-FR-A8YC-06 14 94756291 94756291 G A SERPINA10 Missense_Mutation p.R214W 0.30 tolerated(0.08) benign(0.004) TCGA-FR-A8YC-06 14 95035774 95035774 G A SERPINA4 Missense_Mutation p.E376K 0.18 tolerated(0.2) benign(0.055) TCGA-FR-A8YC-06 14 95111348 95111348 G A SERPINA13P RNA 0.74 TCGA-FR-A8YC-06 14 95583017 95583017 G A DICER1 Nonsense_Mutation p.R509* 0.18 TCGA-FR-A8YC-06 14 96010313 96010313 A G GLRX5 Missense_Mutation p.I109V 0.24 tolerated(0.07) possibly_damaging(0.716) TCGA-FR-A8YC-06 14 96730162 96730162 G A BDKRB1 Missense_Mutation p.C48Y 0.65 deleterious(0.01) possibly_damaging(0.813) TCGA-FR-A8YC-06 14 99642173 99642173 C T BCL11B Missense_Mutation p.E334K 0.55 deleterious(0.01) benign(0.023) TCGA-FR-A8YC-06 15 100996170 100996170 C T CERS3 Missense_Mutation p.M309I 0.67 tolerated(0.42) benign(0.002) TCGA-FR-A8YC-06 15 102291779 102291779 C T DNM1P47 RNA 0.52 TCGA-FR-A8YC-06 15 22369190 22369190 G A OR4M2 Silent p.L205L 0.23 TCGA-FR-A8YC-06 15 23318674 23318674 A C HERC2P2 RNA 0.24 TCGA-FR-A8YC-06 15 24921938 24921938 C T NPAP1 Silent p.F308F 0.24 TCGA-FR-A8YC-06 15 24923674 24923674 C T NPAP1 Missense_Mutation p.S887F 0.29 deleterious(0.03) possibly_damaging(0.85) TCGA-FR-A8YC-06 15 25227242 25227242 C T SNRPN 3'Flank 0.57 TCGA-FR-A8YC-06 15 25336969 25336969 A C SNORD116-23 RNA 0.54 TCGA-FR-A8YC-06 15 25438426 25438426 G A SNORD115-11 3'Flank 0.24 TCGA-FR-A8YC-06 15 25442776 25442776 C T SNORD115-15 RNA 0.24 TCGA-FR-A8YC-06 15 25463818 25463818 C T SNORD115-27 5'Flank 0.55 TCGA-FR-A8YC-06 15 25486746 25486746 C T SNORD115-40 5'Flank 0.69 TCGA-FR-A8YC-06 15 29346303 29346303 C T APBA2 Silent p.S72S 0.54 TCGA-FR-A8YC-06 15 30659630 30659630 C T CHRFAM7A Missense_Mutation p.M237I 0.20 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 15 31196728 31196728 T - FAN1 5'UTR 0.19 TCGA-FR-A8YC-06 15 33922198 33922198 G A RYR3 Missense_Mutation p.E913K 0.80 probably_damaging(0.999) TCGA-FR-A8YC-06 15 34160046 34160046 G A AVEN Missense_Mutation p.P208L 0.63 deleterious(0.03) probably_damaging(1) TCGA-FR-A8YC-06 15 35530067 35530067 G A ANP32AP1 RNA 0.22 TCGA-FR-A8YC-06 15 39881211 39881211 C T THBS1 Missense_Mutation p.P566L 0.56 deleterious(0.01) benign(0.165) TCGA-FR-A8YC-06 15 39910252 39910252 C T FSIP1 Silent p.Q461Q 0.58 TCGA-FR-A8YC-06 15 40295502 40295502 C T EIF2AK4 Missense_Mutation p.P1115L 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 15 40557096 40557096 C T PAK6 Missense_Mutation p.P37L 0.54 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 15 40557097 40557097 C T PAK6 Silent p.P37P 0.54 TCGA-FR-A8YC-06 15 40657459 40657459 C T DISP2 Silent p.F277F 0.67 TCGA-FR-A8YC-06 15 41099771 41099771 G A ZFYVE19 5'UTR 0.16 TCGA-FR-A8YC-06 15 41228810 41228810 T A DLL4 Missense_Mutation p.L542Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 15 41482163 41482163 C G EXD1 Missense_Mutation p.G285A 0.22 deleterious(0.04) possibly_damaging(0.493) TCGA-FR-A8YC-06 15 41571622 41571622 A T CHP1 3'UTR 0.31 TCGA-FR-A8YC-06 15 41772877 41772877 C T RTF1 Missense_Mutation p.L709F 0.61 deleterious(0.03) benign(0.101) TCGA-FR-A8YC-06 15 41815031 41815031 G A RPAP1 Missense_Mutation p.P892S 0.15 tolerated(0.16) benign(0.156) TCGA-FR-A8YC-06 15 42050036 42050036 A T MGA Missense_Mutation p.K2397M 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 15 42113176 42113179 GCAG CAA MAPKBP1 Frame_Shift_Del p.Q883Kfs*187 0.41 TCGA-FR-A8YC-06 15 42129137 42129137 A T JMJD7 Silent p.A287A 0.23 TCGA-FR-A8YC-06 15 42147838 42147838 C T SPTBN5 Missense_Mutation p.A3043T 0.52 benign(0.377) TCGA-FR-A8YC-06 15 43109288 43109288 G A TTBK2 Missense_Mutation p.A182V 0.62 tolerated(0.21) benign(0.026) TCGA-FR-A8YC-06 15 43653989 43653989 C A ZSCAN29 Missense_Mutation p.G614V 0.29 deleterious(0.01) benign(0.282) TCGA-FR-A8YC-06 15 43707840 43707840 C T TP53BP1 Missense_Mutation p.E1681K 0.61 deleterious(0.01) possibly_damaging(0.691) TCGA-FR-A8YC-06 15 43816614 43816614 G A MAP1A Silent p.E981E 0.16 TCGA-FR-A8YC-06 15 43819138 43819138 C T MAP1A Missense_Mutation p.P1823S 0.26 benign(0.015) TCGA-FR-A8YC-06 15 43910021 43910021 G A STRC Missense_Mutation p.P200S 0.21 tolerated(0.7) benign(0.005) TCGA-FR-A8YC-06 15 44673158 44673158 C T CASC4 Silent p.F352F 0.26 TCGA-FR-A8YC-06 15 45249110 45249110 G A C15orf43 Silent p.T27T 0.15 TCGA-FR-A8YC-06 15 45394107 45394107 C T DUOX2 Missense_Mutation p.G912E 0.52 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YC-06 15 45439838 45439838 C T DUOX1 Silent p.L844L 0.53 TCGA-FR-A8YC-06 15 48740986 48740986 C T FBN1 Missense_Mutation p.D1884N 0.60 benign(0.036) TCGA-FR-A8YC-06 15 48758032 48758032 C T FBN1 Missense_Mutation p.G1591R 0.32 probably_damaging(1) TCGA-FR-A8YC-06 15 49575839 49575839 A T GALK2 Missense_Mutation p.N227I 0.67 deleterious(0) probably_damaging(0.983) TCGA-FR-A8YC-06 15 49575840 49575840 C T GALK2 Silent p.N227N 0.65 TCGA-FR-A8YC-06 15 49575873 49575873 C T GALK2 Silent p.S238S 0.49 TCGA-FR-A8YC-06 15 50902091 50902091 G A TRPM7 Missense_Mutation p.S783F 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A8YC-06 15 51828467 51828467 G A DMXL2 Missense_Mutation p.S737L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 15 51855616 51855616 A G DMXL2 Missense_Mutation p.W177R 0.28 deleterious(0) possibly_damaging(0.867) TCGA-FR-A8YC-06 15 52100745 52100745 C T TMOD2 3'UTR 0.53 TCGA-FR-A8YC-06 15 52192417 52192417 C T TMOD3 Silent p.I267I 0.53 TCGA-FR-A8YC-06 15 52497097 52497097 C T MYO5C Silent p.K1595K 0.21 TCGA-FR-A8YC-06 15 52531994 52531994 C T MYO5C Missense_Mutation p.R880Q 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A8YC-06 15 55664156 55664156 T A CCPG1 Missense_Mutation p.R181W 0.25 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 15 57976718 57976718 T A GCOM1 Intron 0.63 TCGA-FR-A8YC-06 15 62182373 62182373 C T VPS13C Missense_Mutation p.G3111E 0.52 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 15 62253840 62253840 G A VPS13C Missense_Mutation p.P1286S 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-FR-A8YC-06 15 62948248 62948248 C T TLN2 Missense_Mutation p.S208L 0.26 deleterious(0.03) possibly_damaging(0.692) TCGA-FR-A8YC-06 15 63942054 63942054 A T HERC1 Silent p.A3539A 0.32 TCGA-FR-A8YC-06 15 64673704 64673704 C T KIAA0101 5'UTR 0.50 TCGA-FR-A8YC-06 15 65490568 65490568 G T CILP Missense_Mutation p.Q686K 0.64 deleterious(0.01) probably_damaging(0.966) TCGA-FR-A8YC-06 15 65491157 65491157 C T CILP Silent p.R489R 0.30 TCGA-FR-A8YC-06 15 65625746 65625746 G A IGDCC3 Silent p.R277R 0.32 TCGA-FR-A8YC-06 15 65681245 65681245 G A IGDCC4 Missense_Mutation p.P870S 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 15 65917849 65917849 C T SLC24A1 Silent p.F477F 0.21 TCGA-FR-A8YC-06 15 65968957 65968957 G A DENND4A Missense_Mutation p.R1398C 0.44 deleterious(0) possibly_damaging(0.677) TCGA-FR-A8YC-06 15 66257308 66257308 C T MEGF11 Silent p.P350P 0.78 TCGA-FR-A8YC-06 15 66845468 66845468 C T LCTL Missense_Mutation p.E351K 0.60 tolerated(0.5) benign(0.314) TCGA-FR-A8YC-06 15 66857077 66857077 C T LCTL Silent p.G73G 0.39 TCGA-FR-A8YC-06 15 68606156 68606156 C G ITGA11 Missense_Mutation p.R948P 0.12 tolerated(0.2) benign(0.161) TCGA-FR-A8YC-06 15 69238007 69238007 G A SPESP1 Missense_Mutation p.R45Q 0.25 deleterious(0.05) benign(0.001) TCGA-FR-A8YC-06 15 69320680 69320680 C T NOX5 Silent p.F100F 0.20 TCGA-FR-A8YC-06 15 69339203 69339203 C T NOX5 Silent p.I563I 0.20 TCGA-FR-A8YC-06 15 71196971 71196971 G A LRRC49 Missense_Mutation p.R131Q 0.30 tolerated(0.13) benign(0.032) TCGA-FR-A8YC-06 15 72191071 72191071 G A MYO9A Missense_Mutation p.S1258F 0.21 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-FR-A8YC-06 15 72292243 72292243 C T MYO9A Silent p.R473R 0.61 TCGA-FR-A8YC-06 15 72338616 72338616 G A MYO9A Missense_Mutation p.R97C 0.27 deleterious(0) probably_damaging(0.953) TCGA-FR-A8YC-06 15 73996629 73996629 C T CD276 Silent p.F395F 0.32 TCGA-FR-A8YC-06 15 74325712 74325712 C T PML Silent p.F538F 0.33 TCGA-FR-A8YC-06 15 74626269 74626269 G A CCDC33 Silent p.L662L 0.31 TCGA-FR-A8YC-06 15 74706945 74706945 C T SEMA7A Missense_Mutation p.V413I 0.04 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A8YC-06 15 75042546 75042546 C T CYP1A2 Missense_Mutation p.S156L 0.25 tolerated(0.1) benign(0.004) TCGA-FR-A8YC-06 15 75047420 75047420 C T CYP1A2 Silent p.S514S 0.30 TCGA-FR-A8YC-06 15 75116706 75116706 G A LMAN1L Silent p.K446K 0.23 TCGA-FR-A8YC-06 15 75116707 75116707 G A LMAN1L Missense_Mutation p.A447T 0.23 tolerated(0.54) benign(0.011) TCGA-FR-A8YC-06 15 75308993 75308993 G A SCAMP5 Missense_Mutation p.G66R 0.48 deleterious(0.03) probably_damaging(1) TCGA-FR-A8YC-06 15 75562504 75562504 G A GOLGA6C Silent p.Q682Q 0.17 TCGA-FR-A8YC-06 15 75762310 75762310 G A PTPN9 Nonsense_Mutation p.Q464* 0.44 TCGA-FR-A8YC-06 15 75981950 75981950 G A CSPG4 Missense_Mutation p.P486S 0.54 tolerated(0.11) benign(0.099) TCGA-FR-A8YC-06 15 76075446 76075446 G A RN7SL319P 5'Flank 0.63 TCGA-FR-A8YC-06 15 78474456 78474456 G A ACSBG1 Missense_Mutation p.A309V 0.51 tolerated(0.52) possibly_damaging(0.582) TCGA-FR-A8YC-06 15 79254511 79254511 C T RASGRF1 Missense_Mutation p.R1266Q 0.81 tolerated(0.21) benign(0.012) TCGA-FR-A8YC-06 15 79339147 79339147 G A RASGRF1 Silent p.A273A 0.30 TCGA-FR-A8YC-06 15 79603615 79603615 C T TMED3 Silent p.S8S 0.43 TCGA-FR-A8YC-06 15 80843562 80843562 C G ARNT2 Missense_Mutation p.D300E 0.22 tolerated(0.64) benign(0.021) TCGA-FR-A8YC-06 15 81650576 81650576 G A TMC3 Silent p.I219I 0.28 TCGA-FR-A8YC-06 15 83455797 83455797 C T FSD2 Missense_Mutation p.E116K 0.50 tolerated(0.11) benign(0.199) TCGA-FR-A8YC-06 15 83455798 83455798 C T FSD2 Silent p.R115R 0.49 TCGA-FR-A8YC-06 15 83932056 83932056 G A BNC1 Silent p.V649V 0.56 TCGA-FR-A8YC-06 15 84568460 84568460 C T ADAMTSL3 Silent p.T559T 0.23 TCGA-FR-A8YC-06 15 84581859 84581859 C T ADAMTSL3 Silent p.P572P 0.45 TCGA-FR-A8YC-06 15 85147203 85147203 C T ZSCAN2 Silent p.S15S 0.21 TCGA-FR-A8YC-06 15 85325901 85325901 C T ZNF592 5'UTR 0.60 TCGA-FR-A8YC-06 15 87572165 87572165 T C AGBL1 3'UTR 0.50 TCGA-FR-A8YC-06 15 88423655 88423655 C T NTRK3 Missense_Mutation p.G727E 0.41 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 15 88680780 88680780 C T NTRK3 Silent p.Q159Q 0.47 TCGA-FR-A8YC-06 15 89002804 89002804 C T MRPL46 3'UTR 0.60 TCGA-FR-A8YC-06 15 90021110 90021110 G A RHCG Silent p.F311F 0.45 TCGA-FR-A8YC-06 15 91017329 91017329 C T IQGAP1 Missense_Mutation p.R847W 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 15 92981678 92981678 G A ST8SIA2 Missense_Mutation p.R129Q 0.25 possibly_damaging(0.455) TCGA-FR-A8YC-06 15 94928743 94928743 C T MCTP2 Missense_Mutation p.P593S 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A8YC-06 16 10032006 10032006 G A GRIN2A Missense_Mutation p.P273S 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 16 10273870 10273870 C T GRIN2A Missense_Mutation p.M133I 0.26 tolerated(0.13) benign(0.053) TCGA-FR-A8YC-06 16 1254199 1254199 C T CACNA1H Missense_Mutation p.T731M 0.72 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 16 1270593 1270593 C T CACNA1H Missense_Mutation p.P2221S 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 16 1396942 1396942 C A BAIAP3 Missense_Mutation p.H948N 0.27 deleterious(0.01) benign(0.1) TCGA-FR-A8YC-06 16 1501640 1501640 G A CLCN7 Silent p.L477L 0.42 TCGA-FR-A8YC-06 16 15116565 15116565 A G PDXDC1 Missense_Mutation p.Q365R 0.35 deleterious(0.02) possibly_damaging(0.465) TCGA-FR-A8YC-06 16 15661870 15661870 C T C16orf45 Silent p.I87I 0.23 TCGA-FR-A8YC-06 16 15931798 15931798 G A MYH11 Silent p.N104N 0.22 TCGA-FR-A8YC-06 16 1614049 1614049 G A IFT140 Silent p.S672S 0.64 TCGA-FR-A8YC-06 16 1710006 1710006 C T CRAMP1L Silent p.N785N 0.21 TCGA-FR-A8YC-06 16 1716556 1716556 C T CRAMP1L Silent p.D997D 0.15 TCGA-FR-A8YC-06 16 17292084 17292084 G A XYLT1 Missense_Mutation p.A425V 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-FR-A8YC-06 16 18554963 18554963 G A NOMO2 Silent p.L237L 0.53 TCGA-FR-A8YC-06 16 18882725 18882725 G A SMG1 Missense_Mutation p.P755S 0.50 tolerated(0.11) benign(0.365) TCGA-FR-A8YC-06 16 19087156 19087156 C T COQ7 Missense_Mutation p.P161S 0.39 tolerated(0.06) benign(0.06) TCGA-FR-A8YC-06 16 19195177 19195177 C T SYT17 Missense_Mutation p.S220L 0.58 deleterious(0) benign(0.256) TCGA-FR-A8YC-06 16 19452091 19452091 C T TMC5 Missense_Mutation p.S244L 0.33 deleterious(0.03) benign(0.065) TCGA-FR-A8YC-06 16 19475172 19475172 C T TMC5 Silent p.I437I 0.61 TCGA-FR-A8YC-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.54 tolerated(0.08) benign(0.009) TCGA-FR-A8YC-06 16 1962192 1962192 C T HS3ST6 Missense_Mutation p.R112Q 0.69 tolerated(0.07) benign(0.112) TCGA-FR-A8YC-06 16 2024838 2024838 G A TBL3 Missense_Mutation p.G152S 0.50 tolerated(0.05) probably_damaging(1) TCGA-FR-A8YC-06 16 2024839 2024839 G A TBL3 Missense_Mutation p.G152D 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 16 202979 202979 C T HBZ Missense_Mutation p.T24I 0.25 tolerated(0.2) benign(0.001) TCGA-FR-A8YC-06 16 20430819 20430819 G A ACSM5 Intron 0.44 TCGA-FR-A8YC-06 16 20497910 20497910 G A ACSM2A Silent p.L548L 0.55 TCGA-FR-A8YC-06 16 20693594 20693594 A G ACSM1 Missense_Mutation p.F199L 0.25 tolerated(0.28) benign(0.088) TCGA-FR-A8YC-06 16 20975333 20975333 C T DNAH3 Silent p.R3291R 0.31 TCGA-FR-A8YC-06 16 20999357 20999357 G A DNAH3 Missense_Mutation p.S2211F 0.58 deleterious(0) possibly_damaging(0.646) TCGA-FR-A8YC-06 16 21011570 21011570 C T DNAH3 Missense_Mutation p.G2133R 0.58 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 16 21011581 21011581 C T DNAH3 Missense_Mutation p.G2129E 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 16 21136594 21136594 C T DNAH3 Missense_Mutation p.E436K 0.19 tolerated(0.6) benign(0.013) TCGA-FR-A8YC-06 16 21218237 21218237 C T ZP2 Silent p.Q135Q 0.58 TCGA-FR-A8YC-06 16 21858808 21858808 G A NPIPB4 Missense_Mutation p.P59S 0.57 possibly_damaging(0.672) TCGA-FR-A8YC-06 16 22335968 22335968 G A POLR3E Missense_Mutation p.G425S 0.28 deleterious(0.05) benign(0.008) TCGA-FR-A8YC-06 16 2293153 2293153 G A ECI1 Silent p.F212F 0.59 TCGA-FR-A8YC-06 16 23080413 23080413 C T USP31 Missense_Mutation p.E1005K 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.888) TCGA-FR-A8YC-06 16 23226499 23226499 C T SCNN1G Silent p.F553F 0.51 TCGA-FR-A8YC-06 16 23489805 23489805 G A GGA2 Silent p.C392C 0.25 TCGA-FR-A8YC-06 16 239924 239924 G A LUC7L Intron 0.61 TCGA-FR-A8YC-06 16 24231290 24231290 G A PRKCB 3'UTR 0.48 TCGA-FR-A8YC-06 16 2436206 2436206 G A ABCA17P RNA 0.20 TCGA-FR-A8YC-06 16 24366209 24366209 C T CACNG3 Silent p.F117F 0.49 TCGA-FR-A8YC-06 16 24372859 24372859 G A CACNG3 Missense_Mutation p.R208Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 16 2493718 2493718 C T CCNF Silent p.I282I 0.28 TCGA-FR-A8YC-06 16 25151506 25151506 C T LCMT1 Silent p.L114L 0.23 TCGA-FR-A8YC-06 16 25258299 25258299 C T ZKSCAN2 Silent p.K406K 0.04 TCGA-FR-A8YC-06 16 26147235 26147235 A G HS3ST4 Missense_Mutation p.Y346C 0.25 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 16 28331643 28331643 G A SBK1 Missense_Mutation p.D226N 0.43 deleterious(0.03) benign(0.028) TCGA-FR-A8YC-06 16 28509570 28509570 C T APOBR Missense_Mutation p.P1042S 0.19 deleterious(0.05) unknown(0) TCGA-FR-A8YC-06 16 28602125 28602125 C T CCDC101 Missense_Mutation p.P212S 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A8YC-06 16 28734841 28734841 C T EIF3C Silent p.L337L 0.15 TCGA-FR-A8YC-06 16 28856096 28856096 G A TUFM Missense_Mutation p.R203W 0.64 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 16 28856098 28856098 A G TUFM Missense_Mutation p.I202T 0.65 deleterious(0.01) benign(0.401) TCGA-FR-A8YC-06 16 29001158 29001158 C T LAT Missense_Mutation p.P243L 0.43 tolerated_low_confidence(0.05) benign(0.004) TCGA-FR-A8YC-06 16 29810339 29810339 G A KIF22 Missense_Mutation p.R198Q 0.58 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 16 29883550 29883550 G A SEZ6L2 Silent p.I887I 0.29 TCGA-FR-A8YC-06 16 30016755 30016755 C T INO80E Missense_Mutation p.P243S 0.33 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 16 30129807 30129807 G A MAPK3 Nonsense_Mutation p.Q136* 0.49 TCGA-FR-A8YC-06 16 30386167 30386167 G A MYLPF 5'UTR 0.29 TCGA-FR-A8YC-06 16 30510733 30510733 G A ITGAL Missense_Mutation p.G690R 0.23 deleterious(0.04) benign(0.232) TCGA-FR-A8YC-06 16 30736240 30736240 C T SRCAP Missense_Mutation p.P1832L 0.29 possibly_damaging(0.546) TCGA-FR-A8YC-06 16 30748991 30748991 C T SRCAP Missense_Mutation p.P2544S 0.28 unknown(0) TCGA-FR-A8YC-06 16 30794976 30794976 G A ZNF629 Nonsense_Mutation p.Q225* 0.30 TCGA-FR-A8YC-06 16 30794977 30794977 G A ZNF629 Silent p.H224H 0.29 TCGA-FR-A8YC-06 16 31160807 31160807 G A PRSS36 Missense_Mutation p.T29I 0.28 deleterious(0) benign(0.007) TCGA-FR-A8YC-06 16 31230633 31230633 G A TRIM72 Silent p.G170G 0.24 TCGA-FR-A8YC-06 16 31419781 31419781 G A ITGAD Missense_Mutation p.E349K 0.56 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YC-06 16 31539961 31539961 G A AHSP Silent p.R86R 0.22 TCGA-FR-A8YC-06 16 3254524 3254524 C T OR1F1 Missense_Mutation p.S93F 0.19 deleterious(0.02) benign(0.077) TCGA-FR-A8YC-06 16 3274274 3274274 G A ZNF200 Missense_Mutation p.S269F 0.24 deleterious(0.05) probably_damaging(0.925) TCGA-FR-A8YC-06 16 3306552 3306552 G A MEFV Silent p.T12T 0.41 TCGA-FR-A8YC-06 16 3406330 3406330 C T OR2C1 Silent p.L130L 0.51 TCGA-FR-A8YC-06 16 347223 347223 C T AXIN1 Silent p.G596G 0.65 TCGA-FR-A8YC-06 16 3614253 3614253 C T NLRC3 Missense_Mutation p.D276N 0.57 tolerated(0.51) benign(0.439) TCGA-FR-A8YC-06 16 3801751 3801751 C T CREBBP Missense_Mutation p.G1252D 0.55 unknown(0) TCGA-FR-A8YC-06 16 4242450 4242450 C T SRL Missense_Mutation p.D376N 0.29 tolerated(0.39) possibly_damaging(0.619) TCGA-FR-A8YC-06 16 4926924 4926924 C T UBN1 Missense_Mutation p.P1026L 0.29 tolerated(0.13) benign(0.034) TCGA-FR-A8YC-06 16 49407898 49407898 G A C16orf78 Silent p.R16R 0.36 TCGA-FR-A8YC-06 16 49670491 49670491 G A ZNF423 Silent p.L858L 0.44 TCGA-FR-A8YC-06 16 50325658 50325658 C T ADCY7 Silent p.F129F 0.15 TCGA-FR-A8YC-06 16 50338406 50338406 C T ADCY7 Missense_Mutation p.H502Y 0.32 deleterious(0) possibly_damaging(0.887) TCGA-FR-A8YC-06 16 50753876 50753876 C T NOD2 Silent p.L891L 0.41 TCGA-FR-A8YC-06 16 51174536 51174536 G A SALL1 Missense_Mutation p.P533S 0.39 deleterious(0) probably_damaging(0.934) TCGA-FR-A8YC-06 16 51174650 51174650 G A SALL1 Missense_Mutation p.H495Y 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 16 51174926 51174926 G A SALL1 Missense_Mutation p.P403S 0.45 tolerated(0.18) benign(0.008) TCGA-FR-A8YC-06 16 51175386 51175386 C T SALL1 Silent p.Q249Q 0.42 TCGA-FR-A8YC-06 16 51175620 51175620 C T SALL1 Silent p.A171A 0.19 TCGA-FR-A8YC-06 16 52497974 52497974 G A TOX3 Missense_Mutation p.P94S 0.25 tolerated(0.26) benign(0.009) TCGA-FR-A8YC-06 16 55735829 55735829 G A SLC6A2 Missense_Mutation p.D605N 0.13 tolerated(0.48) benign(0) TCGA-FR-A8YC-06 16 56669709 56669709 C A MT1M 3'Flank 0.24 TCGA-FR-A8YC-06 16 57060650 57060650 T C NLRC5 Silent p.L599L 0.23 TCGA-FR-A8YC-06 16 570883 570883 C T RAB11FIP3 3'UTR 0.60 TCGA-FR-A8YC-06 16 57503125 57503125 C T POLR2C Missense_Mutation p.L103F 0.47 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 16 57697562 57697562 C T GPR56 3'UTR 0.42 TCGA-FR-A8YC-06 16 57983327 57983327 C T CNGB1 Missense_Mutation p.E351K 0.43 tolerated_low_confidence(0.06) benign(0.018) TCGA-FR-A8YC-06 16 61687417 61687417 C T CDH8 3'UTR 0.37 TCGA-FR-A8YC-06 16 61689427 61689427 C T CDH8 Missense_Mutation p.G618E 0.43 deleterious(0) probably_damaging(0.96) TCGA-FR-A8YC-06 16 61747825 61747825 G A CDH8 Missense_Mutation p.P525L 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A8YC-06 16 624603 624603 C T PIGQ Missense_Mutation p.R177C 0.40 tolerated_low_confidence(0.08) benign(0.007) TCGA-FR-A8YC-06 16 64981638 64981638 C A CDH11 Silent p.G753G 0.22 TCGA-FR-A8YC-06 16 66586642 66586642 A G CKLF-CMTM1 Missense_Mutation p.I8M 0.33 tolerated(0.21) benign(0.004) TCGA-FR-A8YC-06 16 66943899 66943899 G A CDH16 Silent p.L755L 0.44 TCGA-FR-A8YC-06 16 66955958 66955958 C T RRAD 3'UTR 0.20 TCGA-FR-A8YC-06 16 67038109 67038109 C T CES4A Silent p.F354F 0.48 TCGA-FR-A8YC-06 16 67290560 67290560 C T SLC9A5 Missense_Mutation p.T367I 0.46 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 16 67763269 67763269 G A RANBP10 Silent p.S422S 0.44 TCGA-FR-A8YC-06 16 68405224 68405224 C T SMPD3 Silent p.G287G 0.13 TCGA-FR-A8YC-06 16 69368724 69368724 G A RP11-343C2.12 Silent p.F17F 0.41 TCGA-FR-A8YC-06 16 69373524 69373524 G A NIP7 5'UTR 0.50 TCGA-FR-A8YC-06 16 69400903 69400903 G A TERF2 Missense_Mutation p.P341S 0.47 tolerated(0.16) benign(0.008) TCGA-FR-A8YC-06 16 69727626 69727626 C T NFAT5 Missense_Mutation p.P1300S 0.43 benign(0.016) TCGA-FR-A8YC-06 16 69776409 69776409 G A NOB1 Silent p.A355A 0.19 TCGA-FR-A8YC-06 16 69965749 69965749 C T WWP2 Silent p.I546I 0.23 TCGA-FR-A8YC-06 16 70064892 70064892 T A MIR1972-2 3'Flank 0.44 TCGA-FR-A8YC-06 16 70416812 70416812 G A ST3GAL2 Missense_Mutation p.P259S 0.94 probably_damaging(1) TCGA-FR-A8YC-06 16 70843881 70843881 C T HYDIN Silent p.L4896L 0.83 TCGA-FR-A8YC-06 16 70998662 70998662 C T HYDIN Silent p.A1919A 0.70 TCGA-FR-A8YC-06 16 727496 727496 G A RHBDL1 Silent p.P307P 0.60 TCGA-FR-A8YC-06 16 735867 735869 ACC CA WDR24 Splice_Site p.X525_splice 0.16 TCGA-FR-A8YC-06 16 7382972 7382972 C T RBFOX1 5'UTR 0.24 TCGA-FR-A8YC-06 16 74508504 74508504 C T GLG1 Silent p.L664L 0.82 TCGA-FR-A8YC-06 16 75563649 75563649 C T CHST5 Missense_Mutation p.D212N 0.31 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 16 7680641 7680641 C T RBFOX1 Missense_Mutation p.S258F 0.61 tolerated(0.72) possibly_damaging(0.837) TCGA-FR-A8YC-06 16 77465457 77465457 G A ADAMTS18 Missense_Mutation p.S77L 0.78 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YC-06 16 81249940 81249940 G A PKD1L2 Missense_Mutation p.P125S 0.78 tolerated(0.59) benign(0.041) TCGA-FR-A8YC-06 16 85936648 85936648 G A IRF8 Silent p.R9R 0.77 TCGA-FR-A8YC-06 16 88689689 88689689 C T ZC3H18 Missense_Mutation p.S577L 0.80 deleterious_low_confidence(0) unknown(0) TCGA-FR-A8YC-06 16 89799810 89799810 C T ZNF276 Missense_Mutation p.R424C 0.87 deleterious(0) possibly_damaging(0.891) TCGA-FR-A8YC-06 16 9934556 9934556 G A GRIN2A Silent p.I533I 0.65 TCGA-FR-A8YC-06 17 10233764 10233764 G C MYH13 Missense_Mutation p.T792R 0.40 deleterious(0.04) possibly_damaging(0.464) TCGA-FR-A8YC-06 17 10258274 10258274 G A MYH13 Missense_Mutation p.S280F 0.44 deleterious(0.05) possibly_damaging(0.58) TCGA-FR-A8YC-06 17 10296184 10296184 C T MYH8 Silent p.K1809K 0.31 TCGA-FR-A8YC-06 17 10304766 10304766 C T MYH8 Silent p.V978V 0.26 TCGA-FR-A8YC-06 17 10319010 10319010 G A MYH8 Missense_Mutation p.S176F 0.41 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YC-06 17 10397736 10397736 G C MYH1 Missense_Mutation p.L1868V 0.40 deleterious(0.02) possibly_damaging(0.839) TCGA-FR-A8YC-06 17 10408183 10408183 C T MYH1 Missense_Mutation p.E879K 0.40 deleterious(0) benign(0.446) TCGA-FR-A8YC-06 17 10415438 10415438 C T MYH1 Missense_Mutation p.V407I 0.42 tolerated(0.14) probably_damaging(0.989) TCGA-FR-A8YC-06 17 10418187 10418187 G A MYH1 Silent p.I177I 0.28 TCGA-FR-A8YC-06 17 10426875 10426875 C T MYH2 Missense_Mutation p.D1804N 0.34 deleterious(0.02) possibly_damaging(0.845) TCGA-FR-A8YC-06 17 10428832 10428832 C T MYH2 Silent p.K1491K 0.38 TCGA-FR-A8YC-06 17 10432313 10432313 G A MYH2 Silent p.S1146S 0.33 TCGA-FR-A8YC-06 17 10542503 10542503 C T MYH3 Missense_Mutation p.E1036K 0.39 deleterious(0) benign(0.067) TCGA-FR-A8YC-06 17 10549070 10549070 G A MYH3 Silent p.F365F 0.35 TCGA-FR-A8YC-06 17 11511551 11511551 G C DNAH9 Missense_Mutation p.V175L 0.37 benign(0.213) TCGA-FR-A8YC-06 17 11572474 11572475 - G DNAH9 Frame_Shift_Ins p.C946Lfs*2 0.37 TCGA-FR-A8YC-06 17 11671886 11671886 C T DNAH9 Silent p.F2429F 0.33 TCGA-FR-A8YC-06 17 12626226 12626226 G A MYOCD Missense_Mutation p.D106N 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 17 12639527 12639527 G A MYOCD Silent p.E155E 0.46 TCGA-FR-A8YC-06 17 1326709 1326709 A G CRK 3'UTR 0.33 TCGA-FR-A8YC-06 17 1326710 1326710 G A CRK 3'UTR 0.33 TCGA-FR-A8YC-06 17 13400037 13400037 G A HS3ST3A1 Missense_Mutation p.S233F 0.16 deleterious(0) possibly_damaging(0.508) TCGA-FR-A8YC-06 17 14248443 14248443 C T HS3ST3B1 Missense_Mutation p.S218F 0.50 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YC-06 17 1557177 1557177 C T PRPF8 Missense_Mutation p.A2041T 0.44 tolerated(0.1) benign(0.031) TCGA-FR-A8YC-06 17 1637150 1637150 C T WDR81 Missense_Mutation p.P1607S 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-FR-A8YC-06 17 16735565 16735565 G T KRT16P2 RNA 0.43 TCGA-FR-A8YC-06 17 18022049 18022049 C T MYO15A 5'UTR 0.38 TCGA-FR-A8YC-06 17 18023295 18023295 C T MYO15A Missense_Mutation p.P394L 0.35 benign(0) TCGA-FR-A8YC-06 17 18133303 18133303 C T LLGL1 Missense_Mutation p.P44S 0.46 deleterious(0.04) benign(0.018) TCGA-FR-A8YC-06 17 18133304 18133304 C T LLGL1 Missense_Mutation p.P44L 0.46 deleterious(0.01) benign(0.382) TCGA-FR-A8YC-06 17 18881116 18881116 C T FAM83G Silent p.E621E 0.36 TCGA-FR-A8YC-06 17 19247078 19247078 G A B9D1 Intron 0.26 TCGA-FR-A8YC-06 17 19555860 19555860 G A ALDH3A2 Missense_Mutation p.G129E 0.36 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 17 19555927 19555927 C T ALDH3A2 Silent p.L151L 0.41 TCGA-FR-A8YC-06 17 2238135 2238135 C T TSR1 Silent p.R204R 0.31 TCGA-FR-A8YC-06 17 2238136 2238136 C T TSR1 Missense_Mutation p.R204K 0.31 tolerated(1) benign(0.007) TCGA-FR-A8YC-06 17 26092687 26092687 G A NOS2 Silent p.L768L 0.24 TCGA-FR-A8YC-06 17 26919093 26919093 G T SPAG5 Missense_Mutation p.P390H 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 27380061 27380061 C T PIPOX Silent p.F129F 0.30 TCGA-FR-A8YC-06 17 28030073 28030073 C T SSH2 Missense_Mutation p.E39K 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 17 28548805 28548805 C T SLC6A4 Missense_Mutation p.D58N 0.41 tolerated(0.21) benign(0.289) TCGA-FR-A8YC-06 17 29120522 29120522 C A CRLF3 Nonsense_Mutation p.E258* 0.24 TCGA-FR-A8YC-06 17 29220775 29220776 - A ATAD5 Frame_Shift_Ins p.C1638Mfs*14 0.45 TCGA-FR-A8YC-06 17 29325687 29325687 C T RNF135 Silent p.I259I 0.30 TCGA-FR-A8YC-06 17 29527558 29527558 G A NF1 Nonsense_Mutation p.W336* 0.29 TCGA-FR-A8YC-06 17 29527559 29527559 G A NF1 Nonsense_Mutation p.W336* 0.29 TCGA-FR-A8YC-06 17 29677284 29677284 G T NF1 Nonsense_Mutation p.E2469* 0.44 TCGA-FR-A8YC-06 17 2996169 2996169 C T OR1D2 Missense_Mutation p.G41E 0.37 deleterious(0.01) benign(0.125) TCGA-FR-A8YC-06 17 30179298 30179298 G A COPRS Nonsense_Mutation p.Q139* 0.37 TCGA-FR-A8YC-06 17 3119395 3119395 C T OR1A1 Silent p.L161L 0.25 TCGA-FR-A8YC-06 17 3195037 3195037 G A OR3A1 Silent p.F280F 0.35 TCGA-FR-A8YC-06 17 3195583 3195583 C T OR3A1 Silent p.G98G 0.35 TCGA-FR-A8YC-06 17 32483003 32483003 G A ASIC2 Silent p.F183F 0.54 TCGA-FR-A8YC-06 17 33521025 33521025 C T SLC35G3 Missense_Mutation p.R101Q 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A8YC-06 17 33690150 33690150 T A SLFN11 Missense_Mutation p.Y226F 0.42 tolerated(0.56) probably_damaging(0.95) TCGA-FR-A8YC-06 17 33690624 33690624 T A SLFN11 Missense_Mutation p.E68V 0.52 deleterious(0.01) benign(0.408) TCGA-FR-A8YC-06 17 33802452 33802452 G A SLFN12L Silent p.F419F 0.47 TCGA-FR-A8YC-06 17 33806375 33806375 G A SLFN12L Missense_Mutation p.S285F 0.50 tolerated(0.2) possibly_damaging(0.614) TCGA-FR-A8YC-06 17 34073004 34073004 G A GAS2L2 Silent p.P504P 0.40 TCGA-FR-A8YC-06 17 34077253 34077253 C T GAS2L2 Missense_Mutation p.R157Q 0.40 tolerated(0.05) probably_damaging(0.968) TCGA-FR-A8YC-06 17 34233919 34233919 C T AC015849.16 RNA 0.21 TCGA-FR-A8YC-06 17 34235481 34235481 G A AC015849.16 RNA 0.51 TCGA-FR-A8YC-06 17 34261780 34261780 C G LYZL6 3'UTR 0.40 TCGA-FR-A8YC-06 17 3477132 3477132 G A SHPK Missense_Mutation p.S633F 0.23 tolerated(0.69) benign(0.002) TCGA-FR-A8YC-06 17 34964915 34964915 C T MRM1 3'UTR 0.44 TCGA-FR-A8YC-06 17 35580506 35580506 T A ACACA Missense_Mutation p.E1164V 0.36 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 17 35990143 35990143 G A DDX52 Missense_Mutation p.P222S 0.47 deleterious(0.02) possibly_damaging(0.713) TCGA-FR-A8YC-06 17 3628845 3628845 C T GSG2 Missense_Mutation p.S539F 0.40 deleterious(0) possibly_damaging(0.897) TCGA-FR-A8YC-06 17 36484828 36484828 C T GPR179 Missense_Mutation p.V1542I 0.28 tolerated(0.12) benign(0.004) TCGA-FR-A8YC-06 17 3660392 3660392 C T ITGAE Missense_Mutation p.E353K 0.41 deleterious(0) probably_damaging(0.958) TCGA-FR-A8YC-06 17 36707421 36707421 G A SRCIN1 Nonsense_Mutation p.R978* 0.40 TCGA-FR-A8YC-06 17 36707422 36707422 G A SRCIN1 Silent p.P977P 0.47 TCGA-FR-A8YC-06 17 36869408 36869408 C T MLLT6 Intron 0.30 TCGA-FR-A8YC-06 17 37213319 37213319 G A CTD-2206N4.4 RNA 0.43 TCGA-FR-A8YC-06 17 37226270 37226270 C T PLXDC1 Splice_Site p.X408_splice 0.29 TCGA-FR-A8YC-06 17 37566462 37566462 G A MED1 Missense_Mutation p.S671F 0.31 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-FR-A8YC-06 17 3769306 3769306 C T CAMKK1 Splice_Site p.X486_splice 0.48 TCGA-FR-A8YC-06 17 37922397 37922397 G A IKZF3 Silent p.N392N 0.34 TCGA-FR-A8YC-06 17 38066156 38066156 G A GSDMB Silent p.P143P 0.46 TCGA-FR-A8YC-06 17 38252212 38252212 G T NR1D1 Missense_Mutation p.P245T 0.47 tolerated(0.31) benign(0.016) TCGA-FR-A8YC-06 17 38450660 38450660 C T CDC6 Missense_Mutation p.L330F 0.31 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 38859462 38859462 C T KRT24 Missense_Mutation p.E162K 0.38 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YC-06 17 38922857 38922857 G A KRT26 Silent p.L439L 0.36 TCGA-FR-A8YC-06 17 38926218 38926218 C T KRT26 Missense_Mutation p.E280K 0.50 tolerated(0.22) benign(0.18) TCGA-FR-A8YC-06 17 38953431 38953431 C T KRT28 Missense_Mutation p.E265K 0.33 deleterious(0) possibly_damaging(0.58) TCGA-FR-A8YC-06 17 38953432 38953432 C T KRT28 Silent p.A264A 0.31 TCGA-FR-A8YC-06 17 38978542 38978542 C T KRT10 Missense_Mutation p.G99E 0.54 tolerated_low_confidence(0.05) unknown(0) TCGA-FR-A8YC-06 17 38978662 38978662 C A KRT10 Missense_Mutation p.R59L 0.27 tolerated_low_confidence(0.61) unknown(0) TCGA-FR-A8YC-06 17 39022948 39022948 C T KRT12 Missense_Mutation p.R164Q 0.34 tolerated(0.8) benign(0.121) TCGA-FR-A8YC-06 17 39092671 39092671 C T KRT23 Missense_Mutation p.G62E 0.31 tolerated(0.14) benign(0.004) TCGA-FR-A8YC-06 17 3917713 3917713 T A ZZEF1 Missense_Mutation p.S2748C 0.45 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 17 39550407 39550407 G A KRT31 Missense_Mutation p.P371L 0.31 deleterious(0.05) benign(0.137) TCGA-FR-A8YC-06 17 39577711 39577711 C T KRT37 Silent p.Q383Q 0.42 TCGA-FR-A8YC-06 17 39637134 39637134 G A KRT35 Silent p.L72L 0.45 TCGA-FR-A8YC-06 17 39723554 39723554 C T KRT9 Missense_Mutation p.G615R 0.55 unknown(0) TCGA-FR-A8YC-06 17 39723926 39723926 C T KRT9 Missense_Mutation p.G491R 0.29 tolerated_low_confidence(0.13) unknown(0) TCGA-FR-A8YC-06 17 39777978 39777978 C T KRT17 Missense_Mutation p.G234D 0.33 deleterious(0) benign(0.208) TCGA-FR-A8YC-06 17 39914009 39914009 G A JUP Nonsense_Mutation p.Q601* 0.42 TCGA-FR-A8YC-06 17 39998106 39998106 G A KLHL10 Missense_Mutation p.E76K 0.34 tolerated(0.17) benign(0.196) TCGA-FR-A8YC-06 17 40253733 40253733 C T DHX58 3'UTR 0.61 TCGA-FR-A8YC-06 17 40337413 40337413 G A HCRT 5'UTR 0.32 TCGA-FR-A8YC-06 17 40342268 40342268 G A GHDC Missense_Mutation p.P437S 0.53 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 17 40705356 40705356 T A HSD17B1 Intron 0.56 TCGA-FR-A8YC-06 17 40931081 40931081 C T VPS25 Silent p.F175F 0.48 TCGA-FR-A8YC-06 17 41610131 41610131 G A ETV4 Missense_Mutation p.A241V 0.50 tolerated(0.18) benign(0.111) TCGA-FR-A8YC-06 17 42337896 42337896 G A SLC4A1 Silent p.L121L 0.33 TCGA-FR-A8YC-06 17 42390540 42390540 C T RUNDC3A Missense_Mutation p.R98W 0.52 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 42477854 42477854 T C GPATCH8 Missense_Mutation p.K531E 0.40 deleterious(0) possibly_damaging(0.888) TCGA-FR-A8YC-06 17 42744546 42744546 G A C17orf104 Missense_Mutation p.G423R 0.36 deleterious(0) possibly_damaging(0.831) TCGA-FR-A8YC-06 17 43176844 43176844 C T NMT1 Missense_Mutation p.T319I 0.40 deleterious(0) probably_damaging(0.951) TCGA-FR-A8YC-06 17 4495718 4495718 G A SMTNL2 Missense_Mutation p.M154I 0.17 tolerated(1) benign(0) TCGA-FR-A8YC-06 17 45247280 45247280 T C CDC27 Intron 0.18 TCGA-FR-A8YC-06 17 4579752 4579752 G A PELP1 Silent p.S251S 0.37 TCGA-FR-A8YC-06 17 45822178 45822178 G A TBX21 Missense_Mutation p.G352R 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A8YC-06 17 45897354 45897354 G A OSBPL7 Silent p.L62L 0.31 TCGA-FR-A8YC-06 17 45925629 45925629 G A SP6 Missense_Mutation p.P56L 0.87 deleterious_low_confidence(0.01) benign(0.216) TCGA-FR-A8YC-06 17 46030312 46030312 C T PRR15L Missense_Mutation p.E97K 0.68 deleterious_low_confidence(0.04) possibly_damaging(0.643) TCGA-FR-A8YC-06 17 46247999 46247999 C T SKAP1 Silent p.E283E 0.20 TCGA-FR-A8YC-06 17 46608249 46608249 C T HOXB1 Missense_Mutation p.M6I 0.30 deleterious(0) probably_damaging(0.942) TCGA-FR-A8YC-06 17 46627886 46627886 G A HOXB3 Missense_Mutation p.S369F 0.15 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 17 46654149 46654149 C T HOXB4 Missense_Mutation p.G231S 0.39 tolerated(1) unknown(0) TCGA-FR-A8YC-06 17 46654150 46654150 C T HOXB4 Silent p.S230S 0.39 TCGA-FR-A8YC-06 17 46805762 46805762 G A HOXB13 Missense_Mutation p.P65L 0.18 deleterious(0.03) possibly_damaging(0.575) TCGA-FR-A8YC-06 17 47118753 47118753 C T IGF2BP1 Missense_Mutation p.P278S 0.23 tolerated(0.11) possibly_damaging(0.687) TCGA-FR-A8YC-06 17 47246102 47246102 G A B4GALNT2 Silent p.E445E 0.14 TCGA-FR-A8YC-06 17 47376047 47376047 G A ZNF652 Missense_Mutation p.P517S 0.27 tolerated_low_confidence(0.14) benign(0.058) TCGA-FR-A8YC-06 17 4806337 4806337 C T CHRNE Missense_Mutation p.V8I 0.25 tolerated(0.53) benign(0) TCGA-FR-A8YC-06 17 48264280 48264280 G A COL1A1 Missense_Mutation p.P1179S 0.66 unknown(0) TCGA-FR-A8YC-06 17 48614269 48614269 G A EPN3 Missense_Mutation p.D118N 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 48673980 48673980 G A CACNA1G Missense_Mutation p.D1013N 0.20 tolerated(0.12) benign(0.003) TCGA-FR-A8YC-06 17 48695689 48695689 G T CACNA1G Missense_Mutation p.W1804C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 17 48745112 48745112 C T ABCC3 Silent p.P543P 0.31 TCGA-FR-A8YC-06 17 48917549 48917549 C T WFIKKN2 Silent p.F300F 0.62 TCGA-FR-A8YC-06 17 4996194 4996194 C T ZFP3 Silent p.I465I 0.50 TCGA-FR-A8YC-06 17 51901832 51901832 G A KIF2B Missense_Mutation p.E480K 0.19 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 17 51902415 51902415 G A KIF2B Silent p.%3D 0.23 TCGA-FR-A8YC-06 17 5264995 5264995 C T RABEP1 Intron 0.30 TCGA-FR-A8YC-06 17 5322865 5322865 G A NUP88 Missense_Mutation p.P36S 0.34 tolerated(0.3) benign(0.002) TCGA-FR-A8YC-06 17 53345149 53345149 T A HLF Missense_Mutation p.D51E 0.22 tolerated(0.31) benign(0.003) TCGA-FR-A8YC-06 17 5353670 5353670 G A DHX33 Silent p.S527S 0.29 TCGA-FR-A8YC-06 17 53798175 53798175 G A TMEM100 Missense_Mutation p.S86F 0.25 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 17 54431216 54431216 C T ANKFN1 Missense_Mutation p.A140V 0.11 tolerated(0.07) probably_damaging(0.998) TCGA-FR-A8YC-06 17 55607064 55607064 A G MSI2 Missense_Mutation p.K145E 0.27 deleterious(0.04) probably_damaging(0.913) TCGA-FR-A8YC-06 17 56247207 56247207 G A OR4D2 Missense_Mutation p.R64Q 0.19 tolerated(0.39) benign(0.024) TCGA-FR-A8YC-06 17 56276408 56276408 C T EPX Silent p.T376T 0.64 TCGA-FR-A8YC-06 17 56405233 56405233 C T BZRAP1 Missense_Mutation p.E17K 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A8YC-06 17 57290450 57290450 C T SMG8 Missense_Mutation p.P756S 0.21 tolerated(0.05) probably_damaging(0.977) TCGA-FR-A8YC-06 17 58073346 58073346 C T RP11-178C3.2 RNA 0.22 TCGA-FR-A8YC-06 17 59152306 59152306 C T BCAS3 Silent p.P700P 0.59 TCGA-FR-A8YC-06 17 59485521 59485521 C T TBX2 Missense_Mutation p.A598V 0.31 deleterious(0.03) possibly_damaging(0.739) TCGA-FR-A8YC-06 17 59560712 59560712 C T TBX4 Silent p.F491F 0.17 TCGA-FR-A8YC-06 17 5991354 5991354 C T WSCD1 Silent p.L158L 0.35 TCGA-FR-A8YC-06 17 60613551 60613551 C T TLK2 Silent p.L128L 0.31 TCGA-FR-A8YC-06 17 60743886 60743886 C T MRC2 Silent p.S255S 0.14 TCGA-FR-A8YC-06 17 60753808 60753808 C T MRC2 Silent p.L584L 0.21 TCGA-FR-A8YC-06 17 60766901 60766901 C T MRC2 Missense_Mutation p.S1118F 0.18 tolerated(0.09) benign(0.181) TCGA-FR-A8YC-06 17 60768086 60768086 C T MRC2 Missense_Mutation p.R1326W 0.59 tolerated(0.11) benign(0.009) TCGA-FR-A8YC-06 17 61568729 61568729 G A ACE Missense_Mutation p.G967S 0.21 tolerated(0.16) benign(0.268) TCGA-FR-A8YC-06 17 61910726 61910726 G A SMARCD2 Missense_Mutation p.L458F 0.53 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 17 61912123 61912123 T G SMARCD2 Missense_Mutation p.K254T 0.21 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 17 61994860 61994860 C T GH1 Missense_Mutation p.E155K 0.64 tolerated(0.05) benign(0.063) TCGA-FR-A8YC-06 17 62026860 62026860 T C SCN4A Missense_Mutation p.N961S 0.62 tolerated(1) benign(0.014) TCGA-FR-A8YC-06 17 62121469 62121469 G A ERN1 Missense_Mutation p.P938L 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 62856025 62856025 G A LRRC37A3 Silent p.I1413I 0.19 TCGA-FR-A8YC-06 17 62856333 62856333 G A LRRC37A3 Missense_Mutation p.R1311C 0.53 tolerated(0.05) benign(0.033) TCGA-FR-A8YC-06 17 64216794 64216794 C T APOH Missense_Mutation p.G161E 0.30 deleterious(0.02) benign(0.14) TCGA-FR-A8YC-06 17 64224199 64224199 C T APOH Silent p.G60G 0.23 TCGA-FR-A8YC-06 17 649045 649045 G A GEMIN4 Silent p.T746T 0.50 TCGA-FR-A8YC-06 17 65052437 65052437 T C CACNG1 3'UTR 0.55 TCGA-FR-A8YC-06 17 6554863 6554863 C A MED31 5'UTR 0.44 TCGA-FR-A8YC-06 17 6554934 6554934 C T MED31 5'UTR 0.56 TCGA-FR-A8YC-06 17 6589476 6589476 C T SLC13A5 3'UTR 0.29 TCGA-FR-A8YC-06 17 66417882 66417882 G A WIPI1 3'UTR 0.64 TCGA-FR-A8YC-06 17 66417883 66417883 G A WIPI1 3'UTR 0.64 TCGA-FR-A8YC-06 17 67096988 67096988 T A ABCA6 Missense_Mutation p.M988L 0.17 tolerated(0.39) benign(0.06) TCGA-FR-A8YC-06 17 67255856 67255856 G A ABCA5 Missense_Mutation p.P1241L 0.24 deleterious(0.03) possibly_damaging(0.889) TCGA-FR-A8YC-06 17 67305550 67305550 C T ABCA5 Missense_Mutation p.E108K 0.10 tolerated(0.55) benign(0.013) TCGA-FR-A8YC-06 17 68172012 68172012 C T KCNJ2 Missense_Mutation p.P278S 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 70943902 70943902 G A SLC39A11 Missense_Mutation p.S140F 0.24 deleterious(0) possibly_damaging(0.781) TCGA-FR-A8YC-06 17 7100082 7100082 G A DLG4 Silent p.I402I 0.33 TCGA-FR-A8YC-06 17 71410896 71410896 G A SDK2 Missense_Mutation p.P791S 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 17 72301486 72301486 A C DNAI2 Missense_Mutation p.R372S 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-FR-A8YC-06 17 72308192 72308192 G A DNAI2 Silent p.R515R 0.59 TCGA-FR-A8YC-06 17 72322456 72322456 G A KIF19 5'UTR 0.79 TCGA-FR-A8YC-06 17 72725423 72725423 G A RAB37 Missense_Mutation p.G34E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 72954853 72954853 G A HID1 Silent p.F385F 0.19 TCGA-FR-A8YC-06 17 7329932 7329932 C T C17orf74 Nonsense_Mutation p.Q208* 0.42 TCGA-FR-A8YC-06 17 73482072 73482072 G A KIAA0195 Missense_Mutation p.A89T 0.43 tolerated(0.47) benign(0.028) TCGA-FR-A8YC-06 17 73482073 73482073 C T KIAA0195 Missense_Mutation p.A89V 0.43 tolerated(0.25) benign(0.001) TCGA-FR-A8YC-06 17 73482074 73482074 C T KIAA0195 Silent p.A89A 0.45 TCGA-FR-A8YC-06 17 73492552 73492552 G A KIAA0195 Silent p.Q1081Q 0.60 TCGA-FR-A8YC-06 17 73554273 73554273 C T LLGL2 Nonsense_Mutation p.Q71* 0.16 TCGA-FR-A8YC-06 17 73727337 73727337 C T ITGB4 Missense_Mutation p.S368F 0.28 deleterious(0) possibly_damaging(0.905) TCGA-FR-A8YC-06 17 73727338 73727338 C T ITGB4 Silent p.S368S 0.27 TCGA-FR-A8YC-06 17 73746799 73746799 C T ITGB4 Silent p.A1171A 0.14 TCGA-FR-A8YC-06 17 73838674 73838674 G A UNC13D Silent p.L137L 0.16 TCGA-FR-A8YC-06 17 73910110 73910110 C T FBF1 Missense_Mutation p.E990K 0.29 deleterious(0) possibly_damaging(0.537) TCGA-FR-A8YC-06 17 73944537 73944537 C T ACOX1 Missense_Mutation p.G577E 0.63 tolerated(0.36) benign(0.017) TCGA-FR-A8YC-06 17 74006175 74006175 G A EVPL Silent p.I1037I 0.57 TCGA-FR-A8YC-06 17 7415542 7415542 T A POLR2A Missense_Mutation p.N1457K 0.32 possibly_damaging(0.889) TCGA-FR-A8YC-06 17 74278138 74278138 G A QRICH2 Missense_Mutation p.S1191F 0.67 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 17 7533808 7533808 C T SHBG Silent p.D62D 0.33 TCGA-FR-A8YC-06 17 76060870 76060870 C T TNRC6C Silent p.S818S 0.64 TCGA-FR-A8YC-06 17 76060871 76060871 T G TNRC6C Missense_Mutation p.S819A 0.64 tolerated(0.42) benign(0.011) TCGA-FR-A8YC-06 17 76496500 76496500 C T DNAH17 Missense_Mutation p.G1829R 0.24 probably_damaging(0.997) TCGA-FR-A8YC-06 17 76522762 76522762 C T DNAH17 Missense_Mutation p.D1228N 0.17 benign(0.095) TCGA-FR-A8YC-06 17 76535865 76535865 A T DNAH17 Missense_Mutation p.F877Y 0.34 benign(0.067) TCGA-FR-A8YC-06 17 7673603 7673603 G A DNAH2 Silent p.R1325R 0.33 TCGA-FR-A8YC-06 17 7674098 7674098 G A DNAH2 Silent p.L1403L 0.44 TCGA-FR-A8YC-06 17 7753180 7753180 C T KDM6B Missense_Mutation p.S1161F 0.39 possibly_damaging(0.816) TCGA-FR-A8YC-06 17 77709200 77709200 A C ENPP7 Missense_Mutation p.D253A 0.63 tolerated(0.49) benign(0.044) TCGA-FR-A8YC-06 17 78069136 78069136 G A CCDC40 Silent p.E969E 0.26 TCGA-FR-A8YC-06 17 78111967 78111967 C T EIF4A3 Missense_Mutation p.V281I 0.22 tolerated(0.12) benign(0.038) TCGA-FR-A8YC-06 17 78120628 78120628 G A EIF4A3 Silent p.L45L 0.16 TCGA-FR-A8YC-06 17 78447213 78447213 G A NPTX1 Silent p.F228F 0.55 TCGA-FR-A8YC-06 17 78971099 78971099 G A CHMP6 Silent p.E151E 0.16 TCGA-FR-A8YC-06 17 7907288 7907288 G A GUCY2D Silent p.T280T 0.39 TCGA-FR-A8YC-06 17 79090127 79090127 C T BAIAP2 3'UTR 0.20 TCGA-FR-A8YC-06 17 79094972 79094972 G A AATK Missense_Mutation p.P922S 0.80 deleterious(0.04) probably_damaging(0.999) TCGA-FR-A8YC-06 17 79163632 79163632 C A AZI1 Missense_Mutation p.K1060N 0.26 deleterious(0) possibly_damaging(0.617) TCGA-FR-A8YC-06 17 79182733 79182733 G A AZI1 Silent p.S89S 0.15 TCGA-FR-A8YC-06 17 7918791 7918791 C T GUCY2D Missense_Mutation p.P972L 0.33 deleterious(0.03) probably_damaging(1) TCGA-FR-A8YC-06 17 79503184 79503184 C T FSCN2 Silent p.T332T 0.33 TCGA-FR-A8YC-06 17 79514426 79514426 G A C17orf70 Missense_Mutation p.S561F 0.46 deleterious(0) probably_damaging(0.957) TCGA-FR-A8YC-06 17 79650829 79650829 C T ARL16 Silent p.L9L 0.59 TCGA-FR-A8YC-06 17 7978952 7978952 C T ALOX12B Missense_Mutation p.E539K 0.41 deleterious(0) possibly_damaging(0.796) TCGA-FR-A8YC-06 17 80046363 80046363 T C FASN Silent p.P832P 0.85 TCGA-FR-A8YC-06 17 8012544 8012544 G A ALOXE3 Missense_Mutation p.P636S 0.35 deleterious(0) possibly_damaging(0.788) TCGA-FR-A8YC-06 17 80213358 80213358 A T CSNK1D Missense_Mutation p.F95I 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-FR-A8YC-06 17 80685067 80685067 G A FN3KRP 3'UTR 0.28 TCGA-FR-A8YC-06 17 80887047 80887047 C T TBCD Missense_Mutation p.R918C 0.58 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 17 8108125 8108125 C T AURKB 3'UTR 0.38 TCGA-FR-A8YC-06 17 8108174 8108174 G A AURKB 3'UTR 0.39 TCGA-FR-A8YC-06 17 8158418 8158418 C T PFAS Missense_Mutation p.R118C 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 17 8193079 8193079 C T RANGRF Intron 0.25 TCGA-FR-A8YC-06 17 8224268 8224268 C T ARHGEF15 Missense_Mutation p.A828V 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A8YC-06 17 8248720 8248720 G A ODF4 Missense_Mutation p.E172K 0.30 tolerated(1) benign(0.012) TCGA-FR-A8YC-06 17 9631912 9631912 C T USP43 Nonsense_Mutation p.Q993* 0.29 TCGA-FR-A8YC-06 18 14543050 14543050 G A POTEC Silent p.F32F 0.53 TCGA-FR-A8YC-06 18 19231615 19231615 G T ABHD3 Nonsense_Mutation p.Y389* 0.14 TCGA-FR-A8YC-06 18 19282356 19282356 A T ABHD3 Missense_Mutation p.L144M 0.62 deleterious(0.03) probably_damaging(0.979) TCGA-FR-A8YC-06 18 19761483 19761483 A T GATA6 Missense_Mutation p.N458Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 18 20602226 20602226 G A RBBP8 Missense_Mutation p.M863I 0.59 tolerated(0.54) benign(0.001) TCGA-FR-A8YC-06 18 21089231 21089231 C T C18orf8 Silent p.I132I 0.17 TCGA-FR-A8YC-06 18 21399917 21399917 C T LAMA3 Missense_Mutation p.P754S 0.46 probably_damaging(0.978) TCGA-FR-A8YC-06 18 21419818 21419818 G A LAMA3 Silent p.R1087R 0.28 TCGA-FR-A8YC-06 18 21662908 21662908 C T TTC39C Missense_Mutation p.R283C 0.54 deleterious(0) possibly_damaging(0.507) TCGA-FR-A8YC-06 18 23713976 23713976 G A PSMA8 Missense_Mutation p.G16E 0.64 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 18 28574260 28574260 C T DSC3 Missense_Mutation p.G858R 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 18 28651589 28651589 C T DSC2 Missense_Mutation p.G703S 0.19 deleterious(0.03) probably_damaging(1) TCGA-FR-A8YC-06 18 28662269 28662269 C T DSC2 Missense_Mutation p.E400K 0.16 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 18 28667722 28667722 G A DSC2 Silent p.L229L 0.57 TCGA-FR-A8YC-06 18 28671037 28671037 G A DSC2 Missense_Mutation p.S143L 0.25 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 18 28719831 28719831 C T DSC1 Missense_Mutation p.D515N 0.20 tolerated(0.39) probably_damaging(0.954) TCGA-FR-A8YC-06 18 28935232 28935232 C T DSG1 Nonsense_Mutation p.Q1025* 0.42 TCGA-FR-A8YC-06 18 28935314 28935314 G A DSG1 3'UTR 0.36 TCGA-FR-A8YC-06 18 28965120 28965120 G A DSG4 Missense_Mutation p.E24K 0.63 tolerated(0.12) benign(0.009) TCGA-FR-A8YC-06 18 28968334 28968334 G A DSG4 Missense_Mutation p.R74Q 0.69 deleterious(0.02) probably_damaging(0.954) TCGA-FR-A8YC-06 18 29036421 29036421 G A DSG3 Missense_Mutation p.G23R 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-FR-A8YC-06 18 29052357 29052357 G A DSG3 Missense_Mutation p.G670R 0.24 tolerated(0.3) possibly_damaging(0.856) TCGA-FR-A8YC-06 18 29115273 29115273 G A DSG2 Missense_Mutation p.D441N 0.27 tolerated(0.48) benign(0.281) TCGA-FR-A8YC-06 18 29178673 29178673 G A TTR 3'UTR 0.50 TCGA-FR-A8YC-06 18 31323995 31323995 C T ASXL3 Missense_Mutation p.L1395F 0.27 benign(0.02) TCGA-FR-A8YC-06 18 31324945 31324945 C T ASXL3 Silent p.S1711S 0.23 TCGA-FR-A8YC-06 18 31709912 31709912 A G NOL4 Missense_Mutation p.Y113H 0.58 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A8YC-06 18 33691003 33691003 A G SLC39A6 Intron 0.19 TCGA-FR-A8YC-06 18 33779807 33779807 C T MOCOS Missense_Mutation p.S154F 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 18 34205497 34205497 C A FHOD3 Silent p.G327G 0.47 TCGA-FR-A8YC-06 18 347336 347336 G T COLEC12 Missense_Mutation p.Q96K 0.26 tolerated(0.1) possibly_damaging(0.678) TCGA-FR-A8YC-06 18 40695439 40695439 C T RIT2 Missense_Mutation p.G16S 0.51 tolerated(0.15) benign(0.068) TCGA-FR-A8YC-06 18 40850309 40850309 A G SYT4 Silent p.G425G 0.22 TCGA-FR-A8YC-06 18 40853758 40853758 T A SYT4 Missense_Mutation p.R212S 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 18 43219738 43219738 G A SLC14A2 Missense_Mutation p.G291S 0.20 deleterious(0.03) benign(0.336) TCGA-FR-A8YC-06 18 44272218 44272218 C T ST8SIA5 Missense_Mutation p.M75I 0.26 benign(0.002) TCGA-FR-A8YC-06 18 44555079 44555079 C T TCEB3C Missense_Mutation p.E379K 0.03 deleterious(0.02) benign(0.01) TCGA-FR-A8YC-06 18 44561280 44561280 G A TCEB3B Missense_Mutation p.P119L 0.19 tolerated(0.06) possibly_damaging(0.88) TCGA-FR-A8YC-06 18 46287923 46287923 G A CTIF Missense_Mutation p.E414K 0.31 tolerated(0.15) benign(0.064) TCGA-FR-A8YC-06 18 47101801 47101801 G A LIPG Missense_Mutation p.D212N 0.61 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 18 47369739 47369739 C T MYO5B Missense_Mutation p.G1495S 0.20 tolerated(0.82) benign(0.031) TCGA-FR-A8YC-06 18 47778153 47778153 C T CCDC11 Missense_Mutation p.E159K 0.04 deleterious(0) possibly_damaging(0.592) TCGA-FR-A8YC-06 18 47801762 47801762 G A MBD1 Intron 0.58 TCGA-FR-A8YC-06 18 48255619 48255619 G A MAPK4 Missense_Mutation p.A387T 0.23 tolerated_low_confidence(0.59) benign(0.001) TCGA-FR-A8YC-06 18 50278578 50278578 C T DCC Silent p.A82A 0.49 TCGA-FR-A8YC-06 18 50432546 50432546 C T DCC Missense_Mutation p.P182L 0.32 tolerated(0.48) benign(0.005) TCGA-FR-A8YC-06 18 50450202 50450202 C T DCC Nonsense_Mutation p.R275* 0.22 TCGA-FR-A8YC-06 18 50866177 50866177 C T DCC Silent p.I753I 0.22 TCGA-FR-A8YC-06 18 50918205 50918205 G A DCC Missense_Mutation p.R879Q 0.49 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 18 50936834 50936834 T A DCC Missense_Mutation p.F983Y 0.58 tolerated(1) benign(0.018) TCGA-FR-A8YC-06 18 50936987 50936987 C T DCC Missense_Mutation p.S1034F 0.48 deleterious(0.01) probably_damaging(0.973) TCGA-FR-A8YC-06 18 52544944 52544944 G A RAB27B Missense_Mutation p.G43E 0.56 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 18 56205143 56205143 T C ALPK2 Missense_Mutation p.H759R 0.10 tolerated(0.64) benign(0.006) TCGA-FR-A8YC-06 18 56615314 56615314 T C ZNF532 Silent p.C907C 0.27 TCGA-FR-A8YC-06 18 57122158 57122158 C T CCBE1 Silent p.V193V 0.53 TCGA-FR-A8YC-06 18 59483472 59483472 G A RNF152 Silent p.V75V 0.57 TCGA-FR-A8YC-06 18 60241991 60241991 C T ZCCHC2 Missense_Mutation p.P893S 0.59 tolerated(0.06) probably_damaging(0.998) TCGA-FR-A8YC-06 18 61260182 61260182 C T SERPINB13 Missense_Mutation p.S150F 0.25 tolerated(0.09) probably_damaging(0.975) TCGA-FR-A8YC-06 18 61323095 61323095 G A SERPINB3 Silent p.L323L 0.31 TCGA-FR-A8YC-06 18 61324614 61324614 T A SERPINB3 Missense_Mutation p.I168F 0.28 tolerated(0.05) benign(0.016) TCGA-FR-A8YC-06 18 61387323 61387323 C T SERPINB11 Silent p.F184F 0.49 TCGA-FR-A8YC-06 18 6311640 6311640 C T L3MBTL4 5'UTR 0.50 TCGA-FR-A8YC-06 18 63477007 63477007 C T CDH7 Missense_Mutation p.S93F 0.17 deleterious(0) benign(0.25) TCGA-FR-A8YC-06 18 65180243 65180243 C T DSEL Missense_Mutation p.D545N 0.46 tolerated(0.15) probably_damaging(0.928) TCGA-FR-A8YC-06 18 65180387 65180387 C T DSEL Missense_Mutation p.E497K 0.34 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 18 70417417 70417417 T C NETO1 Missense_Mutation p.N474S 0.58 tolerated_low_confidence(0.33) benign(0.006) TCGA-FR-A8YC-06 18 70417697 70417697 G A NETO1 Nonsense_Mutation p.Q381* 0.19 TCGA-FR-A8YC-06 18 70450923 70450923 G A NETO1 Silent p.S286S 0.65 TCGA-FR-A8YC-06 18 72347330 72347330 C T ZNF407 Missense_Mutation p.S1452L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 18 739795 739795 G A YES1 Silent p.F359F 0.56 TCGA-FR-A8YC-06 18 74154880 74154880 G A ZNF516 Missense_Mutation p.P44L 0.38 deleterious(0) possibly_damaging(0.856) TCGA-FR-A8YC-06 18 76754350 76754350 G A SALL3 Missense_Mutation p.D787N 0.44 deleterious(0) possibly_damaging(0.449) TCGA-FR-A8YC-06 18 9887982 9887982 C T TXNDC2 Silent p.F502F 0.60 TCGA-FR-A8YC-06 19 10071481 10071481 T C COL5A3 Missense_Mutation p.N1646S 0.24 unknown(0) TCGA-FR-A8YC-06 19 10080560 10080560 C T COL5A3 Silent p.G1325G 0.61 TCGA-FR-A8YC-06 19 10089914 10089914 C T COL5A3 Missense_Mutation p.G923E 0.32 unknown(0) TCGA-FR-A8YC-06 19 10114728 10114728 C T COL5A3 Missense_Mutation p.A230T 0.26 unknown(0) TCGA-FR-A8YC-06 19 1042749 1042749 C T ABCA7 Missense_Mutation p.S168F 0.49 deleterious(0.03) benign(0.02) TCGA-FR-A8YC-06 19 10561305 10561305 C T PDE4A Missense_Mutation p.P216L 0.67 deleterious(0.04) benign(0.007) TCGA-FR-A8YC-06 19 10887880 10887880 C T DNM2 Missense_Mutation p.P226S 0.35 deleterious(0.02) probably_damaging(0.953) TCGA-FR-A8YC-06 19 10906815 10906815 G A DNM2 Intron 0.22 TCGA-FR-A8YC-06 19 11031196 11031196 C T CARM1 Silent p.F427F 0.39 TCGA-FR-A8YC-06 19 11289038 11289038 G A KANK2 Silent p.F509F 0.45 TCGA-FR-A8YC-06 19 1270125 1270125 C T CIRBP Intron 0.68 TCGA-FR-A8YC-06 19 12875655 12875655 G A HOOK2 Silent p.Y600Y 0.24 TCGA-FR-A8YC-06 19 13246245 13246245 C T NACC1 Missense_Mutation p.P75L 0.22 deleterious(0) probably_damaging(0.948) TCGA-FR-A8YC-06 19 13248299 13248299 C T NACC1 Silent p.L412L 0.69 TCGA-FR-A8YC-06 19 13873932 13873932 C T CCDC130 3'UTR 0.40 TCGA-FR-A8YC-06 19 14000920 14000920 C T C19orf57 Missense_Mutation p.G250E 0.54 deleterious(0.01) benign(0.344) TCGA-FR-A8YC-06 19 14743792 14743792 C T EMR3 Nonsense_Mutation p.W528* 0.54 TCGA-FR-A8YC-06 19 14939009 14939009 C T OR7A5 Silent p.L15L 0.15 TCGA-FR-A8YC-06 19 15124546 15124546 G A CCDC105 Silent p.R211R 0.60 TCGA-FR-A8YC-06 19 15132513 15132513 G A CCDC105 Missense_Mutation p.G376D 0.67 tolerated(0.06) possibly_damaging(0.489) TCGA-FR-A8YC-06 19 15795906 15795906 C T CYP4F12 Silent p.S338S 0.33 TCGA-FR-A8YC-06 19 15853094 15853094 G A OR10H3 Missense_Mutation p.E298K 0.28 deleterious(0) benign(0.103) TCGA-FR-A8YC-06 19 16000349 16000349 C T CYP4F2 Missense_Mutation p.D268N 0.50 deleterious(0.04) benign(0.25) TCGA-FR-A8YC-06 19 16000488 16000488 A G CYP4F2 Silent p.Y221Y 0.34 TCGA-FR-A8YC-06 19 16024650 16024650 G A CYP4F11 Silent p.F489F 0.32 TCGA-FR-A8YC-06 19 16060007 16060007 T C OR10H4 Silent p.L64L 0.26 TCGA-FR-A8YC-06 19 16536065 16536065 G A EPS15L1 Silent p.S207S 0.76 TCGA-FR-A8YC-06 19 16536066 16536066 G A EPS15L1 Missense_Mutation p.S207F 0.81 deleterious(0.01) possibly_damaging(0.575) TCGA-FR-A8YC-06 19 16545373 16545373 G A EPS15L1 Intron 0.38 TCGA-FR-A8YC-06 19 16890251 16890251 G A NWD1 Silent p.V902V 0.24 TCGA-FR-A8YC-06 19 17049244 17049244 G A CPAMD8 Missense_Mutation p.P983S 0.58 tolerated(0.24) benign(0.131) TCGA-FR-A8YC-06 19 17186300 17186300 G A HAUS8 5'UTR 0.47 TCGA-FR-A8YC-06 19 17373765 17373765 C T USHBP1 Missense_Mutation p.E80K 0.26 tolerated(0.82) benign(0) TCGA-FR-A8YC-06 19 17379868 17379868 C T BABAM1 Missense_Mutation p.R85W 0.44 deleterious(0) probably_damaging(0.93) TCGA-FR-A8YC-06 19 17877575 17877575 G A FCHO1 Missense_Mutation p.D98N 0.21 tolerated(0.07) benign(0.432) TCGA-FR-A8YC-06 19 18468270 18468270 G A PGPEP1 Silent p.K94K 0.47 TCGA-FR-A8YC-06 19 18652792 18652792 G A FKBP8 5'UTR 0.19 TCGA-FR-A8YC-06 19 18707728 18707728 G A CRLF1 Nonsense_Mutation p.R277* 0.64 TCGA-FR-A8YC-06 19 18709257 18709257 C T CRLF1 Missense_Mutation p.D228N 0.22 deleterious(0) possibly_damaging(0.899) TCGA-FR-A8YC-06 19 1880092 1880092 C T ABHD17A Missense_Mutation p.G170S 0.19 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 19 19646337 19646337 G A YJEFN3 Splice_Site p.X182_splice 0.67 TCGA-FR-A8YC-06 19 19650516 19650516 G A CILP2 Silent p.A31A 0.56 TCGA-FR-A8YC-06 19 19654099 19654099 C T CILP2 Silent p.Y340Y 0.54 TCGA-FR-A8YC-06 19 21606672 21606672 C T ZNF493 Missense_Mutation p.S404F 0.26 deleterious(0.02) possibly_damaging(0.731) TCGA-FR-A8YC-06 19 21910377 21910377 G A ZNF100 Missense_Mutation p.S246L 0.58 tolerated(0.05) probably_damaging(0.997) TCGA-FR-A8YC-06 19 2223316 2223316 A C DOT1L Missense_Mutation p.I1143L 0.53 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-FR-A8YC-06 19 2225413 2225413 C T DOT1L Missense_Mutation p.S1208F 0.21 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-FR-A8YC-06 19 22575654 22575654 C T ZNF98 Missense_Mutation p.S128N 0.24 tolerated(0.13) benign(0.003) TCGA-FR-A8YC-06 19 22575655 22575655 T A ZNF98 Missense_Mutation p.S128C 0.24 deleterious(0.03) possibly_damaging(0.615) TCGA-FR-A8YC-06 19 22780105 22780105 G A RN7SL860P 5'Flank 0.19 TCGA-FR-A8YC-06 19 22939275 22939275 G A ZNF99 3'Flank 0.41 TCGA-FR-A8YC-06 19 22940113 22940113 G A ZNF99 3'Flank 0.60 TCGA-FR-A8YC-06 19 22940843 22940843 C T ZNF99 Missense_Mutation p.C623Y 0.51 deleterious(0.03) possibly_damaging(0.694) TCGA-FR-A8YC-06 19 23844923 23844923 T C ZNF675 Silent p.E73E 0.58 TCGA-FR-A8YC-06 19 23937628 23937628 G A ZNF681 Missense_Mutation p.P75S 0.14 tolerated(0.08) possibly_damaging(0.857) TCGA-FR-A8YC-06 19 24310315 24310315 C T ZNF254 Missense_Mutation p.L505F 0.19 tolerated(0.05) possibly_damaging(0.69) TCGA-FR-A8YC-06 19 30934468 30934468 G A ZNF536 Intron 0.22 TCGA-FR-A8YC-06 19 31769598 31769598 G A TSHZ3 Silent p.G367G 0.56 TCGA-FR-A8YC-06 19 31770318 31770318 G A TSHZ3 Silent p.S127S 0.28 TCGA-FR-A8YC-06 19 32954811 32954811 C T DPY19L3 Silent p.F494F 0.54 TCGA-FR-A8YC-06 19 33119010 33119010 G A ANKRD27 Missense_Mutation p.L467F 0.25 deleterious(0.02) possibly_damaging(0.849) TCGA-FR-A8YC-06 19 33579062 33579062 C T GPATCH1 Silent p.I32I 0.37 TCGA-FR-A8YC-06 19 33706800 33706800 G A SLC7A10 Silent p.F77F 0.50 TCGA-FR-A8YC-06 19 34890886 34890886 C T GPI Missense_Mutation p.S552F 0.62 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A8YC-06 19 35420797 35420797 T A ZNF30 5'UTR 0.19 TCGA-FR-A8YC-06 19 35435079 35435079 G A ZNF30 Silent p.K404K 0.23 TCGA-FR-A8YC-06 19 35556805 35556805 A G HPN Missense_Mutation p.S362G 0.27 tolerated(0.24) benign(0.003) TCGA-FR-A8YC-06 19 36213967 36213967 C T KMT2B Silent p.G931G 0.22 TCGA-FR-A8YC-06 19 36236335 36236335 C T PSENEN 5'UTR 0.63 TCGA-FR-A8YC-06 19 36303655 36303655 C T PRODH2 Missense_Mutation p.G94D 0.17 tolerated(0.45) benign(0.006) TCGA-FR-A8YC-06 19 36349331 36349331 C T KIRREL2 Missense_Mutation p.S78L 0.28 tolerated(0.35) benign(0.012) TCGA-FR-A8YC-06 19 3653453 3653453 G A PIP5K1C Silent p.F252F 0.10 TCGA-FR-A8YC-06 19 37644012 37644012 G A ZNF585A Silent p.I208I 0.21 TCGA-FR-A8YC-06 19 37644200 37644200 G A ZNF585A Missense_Mutation p.L146F 0.23 tolerated(0.07) probably_damaging(0.99) TCGA-FR-A8YC-06 19 37904551 37904551 G A ZNF569 Nonsense_Mutation p.R337* 0.54 TCGA-FR-A8YC-06 19 3816765 3816765 C T ZFR2 Silent p.G670G 0.67 TCGA-FR-A8YC-06 19 38229362 38229362 G A ZNF573 3'UTR 0.60 TCGA-FR-A8YC-06 19 38706816 38706816 C T DPF1 Missense_Mutation p.E315K 0.30 deleterious(0) possibly_damaging(0.813) TCGA-FR-A8YC-06 19 38774345 38774345 C T SPINT2 Missense_Mutation p.S62F 0.26 deleterious(0) probably_damaging(0.942) TCGA-FR-A8YC-06 19 38795318 38795318 G A C19orf33 Missense_Mutation p.D65N 0.30 tolerated_low_confidence(0.23) benign(0.003) TCGA-FR-A8YC-06 19 38861403 38861403 G A CATSPERG Missense_Mutation p.E1151K 0.54 tolerated_low_confidence(0.19) possibly_damaging(0.486) TCGA-FR-A8YC-06 19 38933001 38933001 G A RYR1 Missense_Mutation p.D60N 0.52 possibly_damaging(0.862) TCGA-FR-A8YC-06 19 38939423 38939423 G A RYR1 Silent p.K364K 0.46 TCGA-FR-A8YC-06 19 38951090 38951090 G A RYR1 Silent p.E812E 0.32 TCGA-FR-A8YC-06 19 38989853 38989853 G A RYR1 Missense_Mutation p.D2333N 0.60 benign(0.152) TCGA-FR-A8YC-06 19 39005722 39005722 A G RYR1 Missense_Mutation p.T3177A 0.25 benign(0.009) TCGA-FR-A8YC-06 19 39406919 39406919 G A SARS2 Missense_Mutation p.P401L 0.47 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 19 39408366 39408366 G A SARS2 Silent p.F388F 0.61 TCGA-FR-A8YC-06 19 39760256 39760256 C T IFNL2 Silent p.I133I 0.52 TCGA-FR-A8YC-06 19 39913627 39913627 C T PLEKHG2 Missense_Mutation p.P645S 0.29 tolerated_low_confidence(0.08) benign(0.03) TCGA-FR-A8YC-06 19 39966796 39966797 - C SUPT5H Frame_Shift_Ins p.T1036Hfs*24 0.38 TCGA-FR-A8YC-06 19 39971410 39971410 C T TIMM50 Missense_Mutation p.P76S 0.40 tolerated_low_confidence(0.08) benign(0.005) TCGA-FR-A8YC-06 19 40195160 40195160 G A LGALS14 5'UTR 0.56 TCGA-FR-A8YC-06 19 40357496 40357496 G A FCGBP Missense_Mutation p.P5273S 0.59 probably_damaging(0.977) TCGA-FR-A8YC-06 19 40367771 40367771 A T FCGBP Missense_Mutation p.L4397I 0.47 possibly_damaging(0.867) TCGA-FR-A8YC-06 19 40395851 40395851 C T FCGBP Missense_Mutation p.V2516M 0.12 benign(0.418) TCGA-FR-A8YC-06 19 41522746 41522746 A C CYP2B6 3'UTR 0.53 TCGA-FR-A8YC-06 19 41826349 41826349 T C CCDC97 Silent p.D295D 0.67 TCGA-FR-A8YC-06 19 41928138 41928138 G C BCKDHA Missense_Mutation p.G239A 0.56 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 19 42092917 42092917 G A CEACAM21 3'Flank 0.48 TCGA-FR-A8YC-06 19 42126990 42126990 G A CEACAM4 Nonsense_Mutation p.Q185* 0.15 TCGA-FR-A8YC-06 19 42187821 42187821 G A CEACAM7 Missense_Mutation p.L201F 0.24 deleterious(0) possibly_damaging(0.651) TCGA-FR-A8YC-06 19 42219620 42219620 G A CEACAM5 Missense_Mutation p.G252E 0.39 deleterious(0.01) unknown(0) TCGA-FR-A8YC-06 19 4222698 4222698 T C ANKRD24 Missense_Mutation p.L1068P 0.27 deleterious(0) probably_damaging(0.981) TCGA-FR-A8YC-06 19 42410119 42410119 C T ARHGEF1 Silent p.L826L 0.17 TCGA-FR-A8YC-06 19 42482363 42482363 G T ATP1A3 Silent p.I595I 0.14 TCGA-FR-A8YC-06 19 42563501 42563501 C T GRIK5 Silent p.K229K 0.36 TCGA-FR-A8YC-06 19 42703706 42703706 C T DEDD2 Missense_Mutation p.G289S 0.19 deleterious(0) probably_damaging(0.934) TCGA-FR-A8YC-06 19 42795447 42795447 G A CIC Missense_Mutation p.A843T 0.21 probably_damaging(0.956) TCGA-FR-A8YC-06 19 42880321 42880321 C T MEGF8 Silent p.A2577A 0.47 TCGA-FR-A8YC-06 19 42909664 42909664 C T LIPE Missense_Mutation p.M805I 0.36 tolerated(0.11) benign(0.152) TCGA-FR-A8YC-06 19 43031458 43031458 G A CEACAM1 Silent p.L53L 0.61 TCGA-FR-A8YC-06 19 43093753 43093753 C T CEACAM8 Missense_Mutation p.V187I 0.25 tolerated(0.23) benign(0.129) TCGA-FR-A8YC-06 19 43097884 43097884 C T CEACAM8 Missense_Mutation p.R78Q 0.31 tolerated(0.38) benign(0.011) TCGA-FR-A8YC-06 19 43258585 43258585 G A PSG8 Silent p.I381I 0.23 TCGA-FR-A8YC-06 19 43349180 43349180 G A PSG10P RNA 0.32 TCGA-FR-A8YC-06 19 43358435 43358435 G A PSG10P RNA 0.20 TCGA-FR-A8YC-06 19 43372307 43372307 G A PSG1 Missense_Mutation p.R397C 0.25 deleterious(0) possibly_damaging(0.655) TCGA-FR-A8YC-06 19 43382411 43382411 C T PSG1 Nonsense_Mutation p.W28* 0.25 TCGA-FR-A8YC-06 19 43421906 43421906 G A PSG6 Silent p.I13I 0.53 TCGA-FR-A8YC-06 19 43439875 43439875 C T PSG7 Silent p.T37T 0.54 TCGA-FR-A8YC-06 19 43579507 43579507 G A PSG2 Silent p.L236L 0.53 TCGA-FR-A8YC-06 19 43585107 43585107 G A PSG2 Missense_Mutation p.S119F 0.34 tolerated(0.71) possibly_damaging(0.663) TCGA-FR-A8YC-06 19 43689221 43689221 C T PSG5 Missense_Mutation p.G48E 0.26 deleterious(0) possibly_damaging(0.839) TCGA-FR-A8YC-06 19 43698503 43698503 A C PSG4 Missense_Mutation p.V411G 0.30 deleterious(0) probably_damaging(0.974) TCGA-FR-A8YC-06 19 43757785 43757785 T A PSG9 Silent p.G419G 0.26 TCGA-FR-A8YC-06 19 43757787 43757787 C T PSG9 Missense_Mutation p.G419R 0.26 deleterious_low_confidence(0) benign(0.275) TCGA-FR-A8YC-06 19 43772155 43772155 C T PSG9 Missense_Mutation p.E71K 0.32 tolerated(0.12) benign(0.002) TCGA-FR-A8YC-06 19 43859880 43859880 G A CD177 3'UTR 0.76 TCGA-FR-A8YC-06 19 43866392 43866392 G A CD177 3'UTR 0.71 TCGA-FR-A8YC-06 19 43866404 43866404 C T CD177 3'UTR 0.53 TCGA-FR-A8YC-06 19 44570590 44570590 C T ZNF223 Silent p.L203L 0.27 TCGA-FR-A8YC-06 19 44896625 44896625 C T ZNF285 Silent p.R7R 0.26 TCGA-FR-A8YC-06 19 4523789 4523789 G A PLIN5 Silent p.I381I 0.39 TCGA-FR-A8YC-06 19 45254538 45254538 T C BCL3 Missense_Mutation p.V104A 0.62 deleterious(0.03) benign(0.03) TCGA-FR-A8YC-06 19 45493681 45493681 C T CLPTM1 Silent p.S387S 0.26 TCGA-FR-A8YC-06 19 45579453 45579453 C A ZNF296 Missense_Mutation p.G60V 0.33 deleterious_low_confidence(0.01) benign(0.082) TCGA-FR-A8YC-06 19 46032584 46032584 G A OPA3 Silent p.I91I 0.59 TCGA-FR-A8YC-06 19 46307816 46307816 G A RSPH6A Silent p.I449I 0.20 TCGA-FR-A8YC-06 19 46663889 46663889 C T IGFL2 Missense_Mutation p.P42L 0.56 tolerated(1) benign(0.019) TCGA-FR-A8YC-06 19 46891872 46891872 C T PPP5C Silent p.A413A 0.17 TCGA-FR-A8YC-06 19 47421954 47421954 G A ARHGAP35 Missense_Mutation p.D8N 0.19 deleterious(0.01) possibly_damaging(0.892) TCGA-FR-A8YC-06 19 47422123 47422123 G A ARHGAP35 Missense_Mutation p.G64E 0.48 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 19 47844257 47844257 G A C5AR2 Silent p.R67R 0.32 TCGA-FR-A8YC-06 19 47910670 47910670 C T MEIS3 Missense_Mutation p.E338K 0.43 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 19 47969369 47969369 C T SLC8A2 Missense_Mutation p.E98K 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 19 4817189 4817189 G A TICAM1 Missense_Mutation p.H401Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 19 48304991 48304991 A C TPRX1 3'UTR 0.55 TCGA-FR-A8YC-06 19 48800242 48800242 G A CCDC114 Silent p.S668S 0.38 TCGA-FR-A8YC-06 19 49398702 49398702 G A TULP2 Silent p.I90I 0.25 TCGA-FR-A8YC-06 19 49518396 49518396 C G RUVBL2 Missense_Mutation p.R414G 0.25 tolerated(0.13) benign(0.048) TCGA-FR-A8YC-06 19 49573407 49573407 G A KCNA7 Silent p.A428A 0.40 TCGA-FR-A8YC-06 19 49573408 49573408 G A KCNA7 Missense_Mutation p.A428V 0.42 tolerated_low_confidence(0.31) benign(0.001) TCGA-FR-A8YC-06 19 49999639 49999639 C T RPS11 5'UTR 0.65 TCGA-FR-A8YC-06 19 50086923 50086923 G A PRRG2 Silent p.E70E 0.49 TCGA-FR-A8YC-06 19 50192975 50192975 A T ADM5 5'UTR 0.33 TCGA-FR-A8YC-06 19 50334086 50334086 C T MED25 Missense_Mutation p.S348F 0.24 deleterious(0) benign(0.353) TCGA-FR-A8YC-06 19 50360348 50360348 C T PTOV1 Silent p.F225F 0.22 TCGA-FR-A8YC-06 19 50412474 50412474 G A NUP62 Silent p.A197A 0.54 TCGA-FR-A8YC-06 19 50461972 50461972 C T SIGLEC11 Missense_Mutation p.E431K 0.26 deleterious(0.05) possibly_damaging(0.663) TCGA-FR-A8YC-06 19 50462074 50462074 G A SIGLEC11 Missense_Mutation p.P397S 0.22 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 19 50474533 50474533 C T SIGLEC16 RNA 0.48 TCGA-FR-A8YC-06 19 51022228 51022228 A T LRRC4B Missense_Mutation p.S248T 0.39 deleterious(0) benign(0.261) TCGA-FR-A8YC-06 19 5111909 5111909 C T KDM4B Intron 0.78 TCGA-FR-A8YC-06 19 51363307 51363307 C T KLK3 Missense_Mutation p.P237L 0.56 deleterious(0.02) benign(0.237) TCGA-FR-A8YC-06 19 51466721 51466721 G A KLK6 Silent p.I94I 0.33 TCGA-FR-A8YC-06 19 51525887 51525887 G A KLK11 Missense_Mutation p.P255S 0.24 deleterious(0) probably_damaging(0.962) TCGA-FR-A8YC-06 19 51629045 51629045 C T SIGLEC9 Nonsense_Mutation p.Q205* 0.23 TCGA-FR-A8YC-06 19 51630546 51630546 C T SIGLEC9 Silent p.S336S 0.43 TCGA-FR-A8YC-06 19 51918221 51918221 G A SIGLEC10 Missense_Mutation p.S491F 0.38 deleterious(0.01) possibly_damaging(0.624) TCGA-FR-A8YC-06 19 52001345 52001345 G A SIGLEC12 Silent p.F444F 0.25 TCGA-FR-A8YC-06 19 52023214 52023214 G A SIGLEC6 3'UTR 0.57 TCGA-FR-A8YC-06 19 52272459 52272459 G A FPR2 Nonsense_Mutation p.W183* 0.48 TCGA-FR-A8YC-06 19 52469402 52469402 G A ZNF350 Missense_Mutation p.P102S 0.21 deleterious(0.01) benign(0.001) TCGA-FR-A8YC-06 19 53014603 53014603 C T ZNF578 Silent p.S323S 0.26 TCGA-FR-A8YC-06 19 53432028 53432028 G A ZNF321P 3'UTR 0.54 TCGA-FR-A8YC-06 19 53473495 53473495 C T ZNF702P RNA 0.25 TCGA-FR-A8YC-06 19 53612486 53612486 G A ZNF415 Missense_Mutation p.P271L 0.24 tolerated(0.06) probably_damaging(0.993) TCGA-FR-A8YC-06 19 53740551 53740551 G A ZNF677 Missense_Mutation p.H477Y 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A8YC-06 19 53879144 53879144 C T ZNF525 Missense_Mutation p.S46F 0.24 tolerated(0.15) benign(0.016) TCGA-FR-A8YC-06 19 53911271 53911271 C T ZNF765 Missense_Mutation p.H155Y 0.38 deleterious(0) benign(0.162) TCGA-FR-A8YC-06 19 53911367 53911367 C T ZNF765 Missense_Mutation p.H187Y 0.56 tolerated(0.36) benign(0.019) TCGA-FR-A8YC-06 19 54080833 54080833 C T ZNF331 Missense_Mutation p.S340L 0.25 deleterious(0.04) probably_damaging(0.978) TCGA-FR-A8YC-06 19 54214303 54214303 G A MIR524 RNA 0.34 TCGA-FR-A8YC-06 19 54215605 54215605 G A MIR517A RNA 0.27 TCGA-FR-A8YC-06 19 54314508 54314508 C T NLRP12 Silent p.R135R 0.24 TCGA-FR-A8YC-06 19 5455937 5455937 C T ZNRF4 Silent p.I145I 0.68 TCGA-FR-A8YC-06 19 54760148 54760148 C T LILRB5 Missense_Mutation p.G138E 0.25 tolerated(0.07) possibly_damaging(0.64) TCGA-FR-A8YC-06 19 54968097 54968097 G A LENG8 Silent p.V576V 0.56 TCGA-FR-A8YC-06 19 55106159 55106159 G A LILRA1 Missense_Mutation p.E34K 0.41 deleterious(0.03) possibly_damaging(0.718) TCGA-FR-A8YC-06 19 55145100 55145100 G A LILRB1 Missense_Mutation p.G425S 0.45 tolerated(0.57) benign(0.008) TCGA-FR-A8YC-06 19 55220475 55220475 G A AC098784.2 3'Flank 0.62 TCGA-FR-A8YC-06 19 55284930 55284930 C T KIR2DL1 Silent p.L72L 0.77 TCGA-FR-A8YC-06 19 55301499 55301499 C T CTB-61M7.1 RNA 0.68 TCGA-FR-A8YC-06 19 55378271 55378271 G A KIR3DL2 3'UTR 0.27 TCGA-FR-A8YC-06 19 55399609 55399609 G A FCAR Silent p.R199R 0.39 TCGA-FR-A8YC-06 19 55449566 55449566 G A NLRP7 Missense_Mutation p.R659C 0.46 tolerated(0.17) benign(0.007) TCGA-FR-A8YC-06 19 55450642 55450642 C T NLRP7 Silent p.L515L 0.28 TCGA-FR-A8YC-06 19 55493910 55493910 A G NLRP2 Missense_Mutation p.K282E 0.69 tolerated(0.31) benign(0.199) TCGA-FR-A8YC-06 19 55525913 55525913 G A GP6 Missense_Mutation p.S467F 0.23 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FR-A8YC-06 19 55649353 55649353 G A TNNT1 Silent p.A159A 0.27 TCGA-FR-A8YC-06 19 55716708 55716708 C T PTPRH Missense_Mutation p.R202Q 0.28 unknown(0) TCGA-FR-A8YC-06 19 56153821 56153821 G A ZNF580 5'UTR 0.23 TCGA-FR-A8YC-06 19 56307499 56307499 C T NLRP11 Missense_Mutation p.M763I 0.27 tolerated(0.26) benign(0.001) TCGA-FR-A8YC-06 19 56329530 56329530 G A NLRP11 Missense_Mutation p.S4L 0.40 tolerated(0.06) possibly_damaging(0.537) TCGA-FR-A8YC-06 19 56363518 56363518 G A NLRP4 Silent p.R24R 0.30 TCGA-FR-A8YC-06 19 56369376 56369376 C T NLRP4 Missense_Mutation p.S206F 0.27 deleterious(0.02) possibly_damaging(0.724) TCGA-FR-A8YC-06 19 56410165 56410165 C T NLRP13 Silent p.L976L 0.28 TCGA-FR-A8YC-06 19 56416389 56416389 C T NLRP13 Missense_Mutation p.G846E 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.22 deleterious(0) probably_damaging(0.918) TCGA-FR-A8YC-06 19 56490905 56490905 C T NLRP8 Nonsense_Mutation p.Q1008* 0.49 TCGA-FR-A8YC-06 19 56538961 56538961 G A NLRP5 Silent p.G454G 0.62 TCGA-FR-A8YC-06 19 56539023 56539023 C T NLRP5 Missense_Mutation p.S475F 0.49 tolerated(0.63) benign(0.405) TCGA-FR-A8YC-06 19 56702317 56702317 C T ZSCAN5B Missense_Mutation p.G210S 0.19 tolerated(0.13) benign(0.063) TCGA-FR-A8YC-06 19 56736332 56736332 G A ZSCAN5A Silent p.S28S 0.24 TCGA-FR-A8YC-06 19 56953055 56953055 G A ZNF667 Missense_Mutation p.H437Y 0.25 deleterious(0) probably_damaging(0.984) TCGA-FR-A8YC-06 19 57286838 57286838 G A ZIM2 Missense_Mutation p.P268S 0.25 tolerated(0.2) benign(0.056) TCGA-FR-A8YC-06 19 57328009 57328009 C T PEG3 Missense_Mutation p.E601K 0.41 tolerated(0.52) possibly_damaging(0.681) TCGA-FR-A8YC-06 19 57329146 57329146 G A PEG3 Missense_Mutation p.S277F 0.26 deleterious(0) possibly_damaging(0.825) TCGA-FR-A8YC-06 19 58189852 58189852 G A ZSCAN4 Missense_Mutation p.G294E 0.59 tolerated(0.14) benign(0.038) TCGA-FR-A8YC-06 19 58213258 58213258 C T ZNF154 Silent p.G353G 0.33 TCGA-FR-A8YC-06 19 58563938 58563938 C T ZSCAN1 Silent p.L182L 0.30 TCGA-FR-A8YC-06 19 58723649 58723649 G C ZNF274 Missense_Mutation p.E367Q 0.37 tolerated(0.38) benign(0.157) TCGA-FR-A8YC-06 19 58724096 58724096 C T ZNF274 Missense_Mutation p.R516W 0.17 deleterious(0) probably_damaging(0.96) TCGA-FR-A8YC-06 19 58774016 58774016 C T ZNF544 Missense_Mutation p.H682Y 0.54 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 19 58967874 58967874 C T ZNF324B Silent p.F521F 0.53 TCGA-FR-A8YC-06 19 6897252 6897252 G A EMR1 Missense_Mutation p.G111S 0.67 deleterious(0.02) possibly_damaging(0.45) TCGA-FR-A8YC-06 19 7534830 7534830 C T ARHGEF18 Silent p.L1088L 0.21 TCGA-FR-A8YC-06 19 7807944 7807944 G A CD209 Missense_Mutation p.P399L 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-FR-A8YC-06 19 828252 828252 C T AZU1 Silent p.I27I 0.14 TCGA-FR-A8YC-06 19 8604856 8604856 G T MYO1F Missense_Mutation p.P556H 0.19 deleterious(0.03) possibly_damaging(0.736) TCGA-FR-A8YC-06 19 8604857 8604857 G T MYO1F Missense_Mutation p.P556T 0.20 deleterious(0) possibly_damaging(0.795) TCGA-FR-A8YC-06 19 8661090 8661090 G A ADAMTS10 Missense_Mutation p.H402Y 0.33 deleterious(0.01) benign(0.052) TCGA-FR-A8YC-06 19 8809139 8809139 G A ACTL9 5'UTR 0.64 TCGA-FR-A8YC-06 19 8841808 8841808 G A OR2Z1 Missense_Mutation p.V140I 0.61 tolerated(0.28) benign(0.143) TCGA-FR-A8YC-06 19 8841891 8841891 C T OR2Z1 Silent p.P167P 0.31 TCGA-FR-A8YC-06 19 8976377 8976377 C T MUC16 Missense_Mutation p.D14151N 0.55 possibly_damaging(0.904) TCGA-FR-A8YC-06 19 8998761 8998761 G A MUC16 Missense_Mutation p.P13608S 0.36 possibly_damaging(0.908) TCGA-FR-A8YC-06 19 9026221 9026221 G A MUC16 Silent p.F12255F 0.51 TCGA-FR-A8YC-06 19 9045932 9045932 G A MUC16 Missense_Mutation p.S11900F 0.58 possibly_damaging(0.469) TCGA-FR-A8YC-06 19 9046635 9046635 G A MUC16 Missense_Mutation p.P11666S 0.64 benign(0) TCGA-FR-A8YC-06 19 9049287 9049287 T A MUC16 Missense_Mutation p.T10782S 0.64 benign(0.001) TCGA-FR-A8YC-06 19 9049381 9049381 C T MUC16 Missense_Mutation p.M10750I 0.22 benign(0.203) TCGA-FR-A8YC-06 19 9049605 9049605 C T MUC16 Missense_Mutation p.E10676K 0.55 benign(0.001) TCGA-FR-A8YC-06 19 9058561 9058561 G A MUC16 Missense_Mutation p.P9629S 0.53 unknown(0) TCGA-FR-A8YC-06 19 9062188 9062188 C T MUC16 Missense_Mutation p.E8420K 0.20 unknown(0) TCGA-FR-A8YC-06 19 9063548 9063548 T A MUC16 Missense_Mutation p.E7966D 0.28 unknown(0) TCGA-FR-A8YC-06 19 9064316 9064316 G A MUC16 Silent p.I7710I 0.22 TCGA-FR-A8YC-06 19 9064992 9064992 G A MUC16 Missense_Mutation p.S7485F 0.26 unknown(0) TCGA-FR-A8YC-06 19 9065569 9065569 C T MUC16 Missense_Mutation p.G7293S 0.64 unknown(0) TCGA-FR-A8YC-06 19 9067828 9067828 G A MUC16 Missense_Mutation p.H6540Y 0.24 unknown(0) TCGA-FR-A8YC-06 19 9069339 9069339 G A MUC16 Missense_Mutation p.S6036F 0.23 unknown(0) TCGA-FR-A8YC-06 19 9070775 9070775 C T MUC16 Missense_Mutation p.M5557I 0.30 unknown(0) TCGA-FR-A8YC-06 19 9070805 9070805 C T MUC16 Missense_Mutation p.M5547I 0.20 unknown(0) TCGA-FR-A8YC-06 19 9071139 9071139 G A MUC16 Missense_Mutation p.S5436L 0.25 unknown(0) TCGA-FR-A8YC-06 19 9071436 9071436 G A MUC16 Missense_Mutation p.S5337F 0.27 unknown(0) TCGA-FR-A8YC-06 19 9072751 9072751 C T MUC16 Missense_Mutation p.E4899K 0.62 unknown(0) TCGA-FR-A8YC-06 19 9077652 9077652 C T MUC16 Missense_Mutation p.G3265E 0.22 unknown(0) TCGA-FR-A8YC-06 19 9077822 9077822 G A MUC16 Silent p.I3208I 0.60 TCGA-FR-A8YC-06 19 9085544 9085544 G A MUC16 Missense_Mutation p.P2091S 0.59 unknown(0) TCGA-FR-A8YC-06 19 9086726 9086726 A C MUC16 Missense_Mutation p.L1697V 0.58 unknown(0) TCGA-FR-A8YC-06 19 9087069 9087069 G A MUC16 Silent p.S1582S 0.24 TCGA-FR-A8YC-06 19 9089698 9089698 G A MUC16 Missense_Mutation p.P706L 0.28 unknown(0) TCGA-FR-A8YC-06 19 9237252 9237252 G A OR7G3 Silent p.A125A 0.71 TCGA-FR-A8YC-06 19 9297336 9297336 G A OR7D2 Silent p.R293R 0.61 TCGA-FR-A8YC-06 19 9324640 9324640 G A OR7D4 Silent p.L292L 0.52 TCGA-FR-A8YC-06 19 9325175 9325175 G A OR7D4 Silent p.F113F 0.29 TCGA-FR-A8YC-06 19 9362124 9362124 G A OR7E24 Silent p.V135V 0.59 TCGA-FR-A8YC-06 19 9362359 9362359 G A OR7E24 Missense_Mutation p.E214K 0.47 tolerated(0.07) benign(0.01) TCGA-FR-A8YC-06 19 9406953 9406953 G A ZNF699 Missense_Mutation p.S376L 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A8YC-06 19 9577344 9577344 C T ZNF560 Missense_Mutation p.R760K 0.32 tolerated(0.12) benign(0.022) TCGA-FR-A8YC-06 19 9577721 9577721 C T ZNF560 Silent p.G634G 0.34 TCGA-FR-A8YC-06 19 9577848 9577848 C T ZNF560 Missense_Mutation p.R592Q 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-FR-A8YC-06 19 9577880 9577880 G A ZNF560 Silent p.F581F 0.58 TCGA-FR-A8YC-06 19 9578690 9578690 C T ZNF560 Silent p.R311R 0.53 TCGA-FR-A8YC-06 19 9584951 9584951 C T ZNF560 Nonsense_Mutation p.W27* 0.65 TCGA-FR-A8YC-06 19 9800873 9800873 C T ZNF812 Missense_Mutation p.E436K 0.64 tolerated(0.92) benign(0.152) TCGA-FR-A8YC-06 1 10032187 10032187 C T NMNAT1 Missense_Mutation p.P19L 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 100488075 100488075 G T SLC35A3 3'UTR 0.57 TCGA-FR-A8YC-06 1 100964800 100964800 C T CDC14A Silent p.F579F 0.53 TCGA-FR-A8YC-06 1 101186118 101186118 G A VCAM1 Missense_Mutation p.G51S 0.54 deleterious(0.01) possibly_damaging(0.905) TCGA-FR-A8YC-06 1 10403317 10403317 C T KIF1B Silent p.F1174F 0.46 TCGA-FR-A8YC-06 1 10532537 10532537 C T DFFA 5'UTR 0.41 TCGA-FR-A8YC-06 1 109275923 109275923 T C FNDC7 Missense_Mutation p.Y637H 0.26 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 1 109553884 109553884 G A WDR47 Nonsense_Mutation p.Q269* 0.37 TCGA-FR-A8YC-06 1 109793546 109793546 C T CELSR2 Missense_Mutation p.T282I 0.45 tolerated(0.36) possibly_damaging(0.722) TCGA-FR-A8YC-06 1 109816790 109816790 G A CELSR2 3'UTR 0.25 TCGA-FR-A8YC-06 1 110019485 110019485 C T SYPL2 Silent p.P114P 0.22 TCGA-FR-A8YC-06 1 110086387 110086387 G A GPR61 Nonsense_Mutation p.W248* 0.27 TCGA-FR-A8YC-06 1 110603464 110603464 C T ALX3 Missense_Mutation p.G308E 0.52 deleterious(0) benign(0.424) TCGA-FR-A8YC-06 1 110716607 110716607 G C SLC6A17 Missense_Mutation p.V153L 0.48 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 111440473 111440473 C T CD53 Silent p.L183L 0.56 TCGA-FR-A8YC-06 1 1117753 1117753 G A TTLL10 Missense_Mutation p.M281I 0.24 tolerated(0.05) benign(0.078) TCGA-FR-A8YC-06 1 112020793 112020793 C G C1orf162 3'UTR 0.42 TCGA-FR-A8YC-06 1 112999641 112999641 C T CTTNBP2NL Silent p.L509L 0.26 TCGA-FR-A8YC-06 1 114309789 114309789 G A RSBN1 Missense_Mutation p.H623Y 0.39 deleterious(0.03) possibly_damaging(0.791) TCGA-FR-A8YC-06 1 114401625 114401625 T C PTPN22 Missense_Mutation p.K91R 0.28 deleterious(0) probably_damaging(0.995) TCGA-FR-A8YC-06 1 114448375 114448375 A T DCLRE1B Missense_Mutation p.H56L 0.32 tolerated(0.56) benign(0.007) TCGA-FR-A8YC-06 1 114680309 114680309 G A SYT6 Silent p.T208T 0.25 TCGA-FR-A8YC-06 1 115168136 115168136 G A DENND2C Missense_Mutation p.P157L 0.21 tolerated(0.25) benign(0.003) TCGA-FR-A8YC-06 1 115216650 115216650 T C AMPD1 Silent p.S651S 0.43 TCGA-FR-A8YC-06 1 115231184 115231184 C T AMPD1 Silent p.R104R 0.17 TCGA-FR-A8YC-06 1 11580805 11580805 C T PTCHD2 Silent p.S754S 0.34 TCGA-FR-A8YC-06 1 115828639 115828639 G A NGF 3'UTR 0.31 TCGA-FR-A8YC-06 1 115828857 115828857 C T NGF Missense_Mutation p.S187N 0.24 tolerated(0.32) benign(0.001) TCGA-FR-A8YC-06 1 116670169 116670169 C T MAB21L3 Silent p.V188V 0.15 TCGA-FR-A8YC-06 1 116670794 116670794 C T MAB21L3 Missense_Mutation p.S230L 0.43 deleterious(0.01) possibly_damaging(0.864) TCGA-FR-A8YC-06 1 117122372 117122372 G A IGSF3 Silent p.S1012S 0.11 TCGA-FR-A8YC-06 1 11766655 11766655 G A DRAXIN Missense_Mutation p.G114R 0.56 deleterious(0) probably_damaging(0.973) TCGA-FR-A8YC-06 1 118512708 118512708 C T SPAG17 Missense_Mutation p.G2120R 0.16 deleterious(0) probably_damaging(0.99) TCGA-FR-A8YC-06 1 118526489 118526489 C T SPAG17 Silent p.K1939K 0.11 TCGA-FR-A8YC-06 1 118596691 118596691 C T SPAG17 Silent p.E916E 0.18 TCGA-FR-A8YC-06 1 119427525 119427525 G A TBX15 Missense_Mutation p.P441S 0.52 tolerated_low_confidence(0.22) benign(0.002) TCGA-FR-A8YC-06 1 119474283 119474283 G A TBX15 Silent p.F20F 0.20 TCGA-FR-A8YC-06 1 119925671 119925671 G A HAO2 Missense_Mutation p.E89K 0.43 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 119934827 119934827 C T HAO2 Missense_Mutation p.A289V 0.54 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YC-06 1 119964527 119964527 G A HSD3B2 Missense_Mutation p.E135K 0.31 tolerated(0.09) benign(0.015) TCGA-FR-A8YC-06 1 120050156 120050156 C T HSD3B1 Silent p.I19I 0.12 TCGA-FR-A8YC-06 1 120056657 120056657 G A HSD3B1 Missense_Mutation p.G171R 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 120437854 120437854 C T ADAM30 Missense_Mutation p.G369E 0.28 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 1 12266970 12266970 G A TNFRSF1B Missense_Mutation p.E427K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 12779482 12779482 G A AADACL3 Translation_Start_Site p.M1? 0.54 tolerated_low_confidence(0.19) benign(0.051) TCGA-FR-A8YC-06 1 12785298 12785298 G A AADACL3 Missense_Mutation p.V130I 0.53 tolerated(0.15) probably_damaging(0.953) TCGA-FR-A8YC-06 1 12834995 12834995 C T PRAMEF12 5'UTR 0.30 TCGA-FR-A8YC-06 1 12855969 12855969 G A PRAMEF1 Missense_Mutation p.E417K 0.12 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 1 12907649 12907649 C T HNRNPCL1 Missense_Mutation p.G165E 0.26 tolerated(0.29) possibly_damaging(0.493) TCGA-FR-A8YC-06 1 12907977 12907977 G A HNRNPCL1 Nonsense_Mutation p.Q56* 0.26 TCGA-FR-A8YC-06 1 12907978 12907978 A C HNRNPCL1 Silent p.V55V 0.10 TCGA-FR-A8YC-06 1 12908153 12908153 G A HNRNPCL1 5'UTR 0.10 TCGA-FR-A8YC-06 1 12954608 12954608 G A PRAMEF10 Silent p.A225A 0.49 TCGA-FR-A8YC-06 1 13669247 13669247 G A PRAMEF14 Silent p.I361I 0.34 TCGA-FR-A8YC-06 1 13910524 13910524 G A PDPN Missense_Mutation p.G75E 0.26 tolerated(1) probably_damaging(0.988) TCGA-FR-A8YC-06 1 142803406 142803406 G A RP11-423O2.5 RNA 0.16 TCGA-FR-A8YC-06 1 144951968 144951968 G A PDE4DIP Intron 0.13 TCGA-FR-A8YC-06 1 144952329 144952329 C T PDE4DIP Silent p.V130V 0.13 TCGA-FR-A8YC-06 1 145015921 145015921 G A RP11-326G21.1 5'Flank 0.25 TCGA-FR-A8YC-06 1 145533119 145533119 G A ITGA10 Missense_Mutation p.G405E 0.15 tolerated(0.84) benign(0.001) TCGA-FR-A8YC-06 1 145541877 145541877 T C ITGA10 Silent p.L1134L 0.72 TCGA-FR-A8YC-06 1 145561579 145561579 G A ANKRD35 Missense_Mutation p.E423K 0.14 deleterious(0.01) possibly_damaging(0.636) TCGA-FR-A8YC-06 1 147381237 147381237 G A GJA8 Silent p.E385E 0.62 TCGA-FR-A8YC-06 1 149916024 149916024 G A OTUD7B Missense_Mutation p.S755F 0.74 tolerated_low_confidence(0.09) benign(0.046) TCGA-FR-A8YC-06 1 150443485 150443485 A G RPRD2 Silent p.L687L 0.75 TCGA-FR-A8YC-06 1 150480684 150480684 G A ECM1 5'UTR 0.66 TCGA-FR-A8YC-06 1 150621166 150621166 G A GOLPH3L Silent p.I163I 0.59 TCGA-FR-A8YC-06 1 150672620 150672620 G A HORMAD1 Missense_Mutation p.R358W 0.19 deleterious(0.01) possibly_damaging(0.794) TCGA-FR-A8YC-06 1 150679234 150679234 C T HORMAD1 Missense_Mutation p.G200E 0.17 tolerated(0.11) benign(0.12) TCGA-FR-A8YC-06 1 150786568 150786568 G A ARNT Missense_Mutation p.R700C 0.72 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-FR-A8YC-06 1 151342014 151342014 G A SELENBP1 Silent p.I26I 0.62 TCGA-FR-A8YC-06 1 152058516 152058516 C T TCHHL1 Missense_Mutation p.E548K 0.16 tolerated(0.32) benign(0.038) TCGA-FR-A8YC-06 1 152276854 152276854 C T FLG Nonsense_Mutation p.W3503* 0.70 TCGA-FR-A8YC-06 1 152280197 152280197 C T FLG Missense_Mutation p.A2389T 0.13 possibly_damaging(0.483) TCGA-FR-A8YC-06 1 152280370 152280370 C T FLG Missense_Mutation p.G2331E 0.71 probably_damaging(0.982) TCGA-FR-A8YC-06 1 152323433 152323433 C T FLG2 Missense_Mutation p.G2277S 0.13 benign(0.235) TCGA-FR-A8YC-06 1 152327020 152327020 G A FLG2 Missense_Mutation p.S1081F 0.72 unknown(0) TCGA-FR-A8YC-06 1 152330124 152330124 C T FLG2 Splice_Site p.X47_splice 0.21 TCGA-FR-A8YC-06 1 152552341 152552341 C T LCE3D Silent p.K24K 0.18 TCGA-FR-A8YC-06 1 152733046 152733046 G A KPRP Missense_Mutation p.E328K 0.67 deleterious(0.01) possibly_damaging(0.902) TCGA-FR-A8YC-06 1 152733516 152733516 C T KPRP Silent p.P484P 0.72 TCGA-FR-A8YC-06 1 152777410 152777410 C T LCE1C 3'UTR 0.27 TCGA-FR-A8YC-06 1 153317677 153317677 G A PGLYRP4 Silent p.V107V 0.13 TCGA-FR-A8YC-06 1 153391769 153391769 C G S100A7A Missense_Mutation p.S97C 0.65 deleterious(0.01) possibly_damaging(0.77) TCGA-FR-A8YC-06 1 153409555 153409555 G A S100A7L2 Silent p.P106P 0.77 TCGA-FR-A8YC-06 1 153800776 153800776 C T GATAD2B Silent p.R16R 0.19 TCGA-FR-A8YC-06 1 153947178 153947178 G - JTB Frame_Shift_Del p.R140Gfs*18 0.41 TCGA-FR-A8YC-06 1 154239044 154239044 G A UBAP2L Silent p.Q990Q 0.14 TCGA-FR-A8YC-06 1 154516548 154516548 C T TDRD10 Missense_Mutation p.P205S 0.63 tolerated(0.05) possibly_damaging(0.871) TCGA-FR-A8YC-06 1 155205590 155205590 G A GBA Silent p.L424L 0.21 TCGA-FR-A8YC-06 1 155264128 155264128 C T PKLR Silent p.G338G 0.66 TCGA-FR-A8YC-06 1 155271221 155271221 G A PKLR 5'UTR 0.71 TCGA-FR-A8YC-06 1 155290799 155290799 C T RUSC1 Intron 0.27 TCGA-FR-A8YC-06 1 155448501 155448501 G A ASH1L Missense_Mutation p.S1387F 0.76 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A8YC-06 1 155735299 155735299 T A GON4L Missense_Mutation p.E1322V 0.21 tolerated_low_confidence(0.13) probably_damaging(0.985) TCGA-FR-A8YC-06 1 155735740 155735740 G A GON4L Missense_Mutation p.P1175L 0.19 deleterious_low_confidence(0) benign(0.112) TCGA-FR-A8YC-06 1 155823530 155823530 G A GON4L Silent p.S14S 0.20 TCGA-FR-A8YC-06 1 155984758 155984758 G A SSR2 Silent p.P119P 0.11 TCGA-FR-A8YC-06 1 156182942 156182942 C T PMF1 Missense_Mutation p.L46F 0.71 deleterious(0) probably_damaging(0.972) TCGA-FR-A8YC-06 1 156287217 156287217 T A CCT3 Missense_Mutation p.K294M 0.73 deleterious(0) probably_damaging(0.99) TCGA-FR-A8YC-06 1 156518148 156518148 C T IQGAP3 Missense_Mutation p.E709K 0.20 deleterious(0) benign(0.184) TCGA-FR-A8YC-06 1 156618595 156618595 C T BCAN Silent p.F335F 0.67 TCGA-FR-A8YC-06 1 156622734 156622734 C T BCAN Intron 0.50 TCGA-FR-A8YC-06 1 156701891 156701891 G A RRNAD1 Missense_Mutation p.E74K 0.17 tolerated(0.61) benign(0.004) TCGA-FR-A8YC-06 1 156821508 156821508 G A INSRR Silent p.I338I 0.71 TCGA-FR-A8YC-06 1 156823546 156823546 C T INSRR Missense_Mutation p.R212K 0.20 tolerated(1) benign(0.003) TCGA-FR-A8YC-06 1 156879655 156879655 C T PEAR1 Silent p.A508A 0.77 TCGA-FR-A8YC-06 1 157545338 157545338 G A FCRL4 Silent p.I508I 0.62 TCGA-FR-A8YC-06 1 15767060 15767060 C T CTRC Silent p.F68F 0.64 TCGA-FR-A8YC-06 1 157771777 157771777 C T FCRL1 Missense_Mutation p.G272R 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 1 158152665 158152665 C G CD1D Intron 0.70 TCGA-FR-A8YC-06 1 158152666 158152666 A T CD1D Splice_Site p.X203_splice 0.71 TCGA-FR-A8YC-06 1 158300710 158300710 C T CD1B Silent p.L68L 0.17 TCGA-FR-A8YC-06 1 158324440 158324440 C T CD1E Missense_Mutation p.S111F 0.13 tolerated(0.97) benign(0) TCGA-FR-A8YC-06 1 158325336 158325336 G A CD1E Missense_Mutation p.G201E 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 158325852 158325852 G A CD1E Silent p.V287V 0.72 TCGA-FR-A8YC-06 1 158450313 158450313 G A OR10R2 Missense_Mutation p.E216K 0.14 deleterious(0.04) probably_damaging(0.909) TCGA-FR-A8YC-06 1 158549456 158549456 G A OR10X1 Silent p.F78F 0.20 TCGA-FR-A8YC-06 1 158651408 158651408 G C SPTA1 Missense_Mutation p.T147S 0.17 tolerated(0.57) possibly_damaging(0.521) TCGA-FR-A8YC-06 1 158653218 158653218 C T SPTA1 Silent p.L111L 0.18 TCGA-FR-A8YC-06 1 158725217 158725217 G A OR6K6 Silent p.Q204Q 0.62 TCGA-FR-A8YC-06 1 158747423 158747423 C T OR6N2 Translation_Start_Site p.M1? 0.67 deleterious(0.02) probably_damaging(0.993) TCGA-FR-A8YC-06 1 159176249 159176249 C T DARC 3'UTR 0.66 TCGA-FR-A8YC-06 1 159273739 159273739 C T FCER1A Missense_Mutation p.S33F 0.64 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A8YC-06 1 159277668 159277668 G A FCER1A Silent p.R240R 0.77 TCGA-FR-A8YC-06 1 159410022 159410022 G A OR10J1 Silent p.G158G 0.19 TCGA-FR-A8YC-06 1 159557949 159557949 G A APCS Silent p.L41L 0.70 TCGA-FR-A8YC-06 1 159558487 159558487 G A APCS Missense_Mutation p.V221M 0.68 tolerated(0.05) benign(0.197) TCGA-FR-A8YC-06 1 159779401 159779401 G A FCRL6 Missense_Mutation p.G272R 0.15 tolerated(0.08) possibly_damaging(0.889) TCGA-FR-A8YC-06 1 160011542 160011542 C T KCNJ10 Missense_Mutation p.E261K 0.69 tolerated(0.53) benign(0.392) TCGA-FR-A8YC-06 1 160098552 160098552 G A ATP1A2 Silent p.T376T 0.20 TCGA-FR-A8YC-06 1 160098553 160098553 G A ATP1A2 Missense_Mutation p.G377S 0.20 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 1 160394016 160394016 C T VANGL2 Silent p.T416T 0.17 TCGA-FR-A8YC-06 1 160456426 160456426 C T SLAMF6 3'UTR 0.21 TCGA-FR-A8YC-06 1 160460947 160460947 G A SLAMF6 Missense_Mutation p.S205F 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 160523597 160523597 C T CD84 Intron 0.50 TCGA-FR-A8YC-06 1 160535233 160535233 G A CD84 Missense_Mutation p.P117S 0.65 tolerated(0.51) benign(0.003) TCGA-FR-A8YC-06 1 160849202 160849202 C T ITLN1 Missense_Mutation p.E230K 0.68 deleterious(0.04) benign(0.398) TCGA-FR-A8YC-06 1 161039403 161039403 C T ARHGAP30 Silent p.R4R 0.67 TCGA-FR-A8YC-06 1 161039404 161039404 C T ARHGAP30 Missense_Mutation p.R4Q 0.67 deleterious(0) probably_damaging(0.97) TCGA-FR-A8YC-06 1 161144926 161144926 G A B4GALT3 Missense_Mutation p.P116S 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 161161300 161161300 G T ADAMTS4 Silent p.V714V 0.06 TCGA-FR-A8YC-06 1 162326787 162326787 C T NOS1AP Missense_Mutation p.P267L 0.15 deleterious(0.04) possibly_damaging(0.885) TCGA-FR-A8YC-06 1 162326788 162326788 C T NOS1AP Silent p.P267P 0.15 TCGA-FR-A8YC-06 1 162824744 162824744 C T C1orf110 Silent p.E240E 0.72 TCGA-FR-A8YC-06 1 16356555 16356555 G A CLCNKA Missense_Mutation p.G465R 0.32 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 1 166904549 166904549 C T ILDR2 Missense_Mutation p.G290E 0.60 deleterious(0.04) probably_damaging(0.995) TCGA-FR-A8YC-06 1 167023544 167023544 C T GPA33 3'UTR 0.12 TCGA-FR-A8YC-06 1 167025041 167025041 G A GPA33 Missense_Mutation p.S206L 0.61 deleterious(0) possibly_damaging(0.883) TCGA-FR-A8YC-06 1 167404511 167404511 C T CD247 Intron 0.25 TCGA-FR-A8YC-06 1 169267926 169267926 C A NME7 Missense_Mutation p.W172C 0.74 deleterious(0) possibly_damaging(0.791) TCGA-FR-A8YC-06 1 16945601 16945601 G A RP5-1182A14.5 3'Flank 0.08 TCGA-FR-A8YC-06 1 169582888 169582888 G A SELP Silent p.L175L 0.63 TCGA-FR-A8YC-06 1 171086661 171086661 C T FMO3 3'UTR 0.17 TCGA-FR-A8YC-06 1 171227325 171227325 G A FMO1 Silent p.R33R 0.63 TCGA-FR-A8YC-06 1 173502877 173502877 G A SLC9C2 Silent p.I678I 0.17 TCGA-FR-A8YC-06 1 173567153 173567153 G A SLC9C2 Missense_Mutation p.P83S 0.21 tolerated(0.13) probably_damaging(0.964) TCGA-FR-A8YC-06 1 173567171 173567171 C T SLC9C2 Missense_Mutation p.V77M 0.19 tolerated(0.07) possibly_damaging(0.658) TCGA-FR-A8YC-06 1 173569293 173569293 C T SLC9C2 Missense_Mutation p.G64E 0.12 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.62 tolerated(0.12) benign(0.376) TCGA-FR-A8YC-06 1 175332844 175332844 C T TNR Missense_Mutation p.V903M 0.53 deleterious(0.04) probably_damaging(0.948) TCGA-FR-A8YC-06 1 175334266 175334266 C T TNR Missense_Mutation p.D823N 0.22 tolerated(0.08) possibly_damaging(0.697) TCGA-FR-A8YC-06 1 17566254 17566254 C T PADI1 Silent p.L536L 0.55 TCGA-FR-A8YC-06 1 176525556 176525556 C T PAPPA2 Missense_Mutation p.S33F 0.70 tolerated_low_confidence(0.1) benign(0.003) TCGA-FR-A8YC-06 1 17657565 17657565 C T PADI4 Missense_Mutation p.S65F 0.11 tolerated(0.06) benign(0.06) TCGA-FR-A8YC-06 1 176671864 176671864 G A PAPPA2 Missense_Mutation p.V1120M 0.13 deleterious(0) probably_damaging(0.981) TCGA-FR-A8YC-06 1 176918360 176918360 G A ASTN1 Missense_Mutation p.P672L 0.68 tolerated(0.07) benign(0.002) TCGA-FR-A8YC-06 1 176918361 176918361 G A ASTN1 Missense_Mutation p.P672S 0.69 tolerated(0.07) benign(0.003) TCGA-FR-A8YC-06 1 176983976 176983976 G A ASTN1 Missense_Mutation p.P492S 0.14 deleterious(0) probably_damaging(0.969) TCGA-FR-A8YC-06 1 177245434 177245434 G A BRINP2 Silent p.E292E 0.56 TCGA-FR-A8YC-06 1 177250269 177250269 C T BRINP2 Silent p.L653L 0.72 TCGA-FR-A8YC-06 1 179437776 179437776 C T AXDND1 Missense_Mutation p.S666L 0.10 tolerated(0.33) benign(0) TCGA-FR-A8YC-06 1 179851902 179851902 G A TOR1AIP1 Missense_Mutation p.E89K 0.22 tolerated_low_confidence(0.28) benign(0.154) TCGA-FR-A8YC-06 1 180158769 180158769 C T QSOX1 Missense_Mutation p.P367L 0.07 tolerated(0.12) benign(0.222) TCGA-FR-A8YC-06 1 181686316 181686316 C T CACNA1E Missense_Mutation p.S468F 0.15 tolerated(1) possibly_damaging(0.485) TCGA-FR-A8YC-06 1 181714493 181714493 G A CACNA1E Intron 0.56 TCGA-FR-A8YC-06 1 181767435 181767435 G A CACNA1E Missense_Mutation p.G2136D 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-FR-A8YC-06 1 181767785 181767785 G A CACNA1E Missense_Mutation p.E2253K 0.18 deleterious(0) possibly_damaging(0.905) TCGA-FR-A8YC-06 1 182357853 182357853 G A GLUL Missense_Mutation p.S7F 0.15 tolerated(0.09) benign(0.092) TCGA-FR-A8YC-06 1 182821398 182821398 C T DHX9 Missense_Mutation p.P95S 0.14 tolerated(0.37) benign(0.003) TCGA-FR-A8YC-06 1 184765172 184765172 G A FAM129A Missense_Mutation p.P576S 0.12 deleterious(0.05) possibly_damaging(0.621) TCGA-FR-A8YC-06 1 186157142 186157142 G A HMCN1 Splice_Site p.X5514_splice 0.69 TCGA-FR-A8YC-06 1 190067802 190067802 C T BRINP3 Missense_Mutation p.M549I 0.73 tolerated(0.27) probably_damaging(0.914) TCGA-FR-A8YC-06 1 192335286 192335286 C T RGS21 3'UTR 0.16 TCGA-FR-A8YC-06 1 19404506 19404506 A G UBR4 Silent p.F5096F 0.37 TCGA-FR-A8YC-06 1 19447784 19447784 G A UBR4 Missense_Mutation p.S3347F 0.67 benign(0) TCGA-FR-A8YC-06 1 19615018 19615018 C T AKR7A3 Silent p.G62G 0.27 TCGA-FR-A8YC-06 1 19615019 19615019 C T AKR7A3 Missense_Mutation p.G62E 0.30 tolerated(0.16) benign(0.086) TCGA-FR-A8YC-06 1 196227479 196227479 C T KCNT2 Missense_Mutation p.R1019Q 0.15 deleterious(0.02) possibly_damaging(0.844) TCGA-FR-A8YC-06 1 196758841 196758841 C T CFHR3 Intron 0.94 TCGA-FR-A8YC-06 1 197024877 197024877 T G F13B Missense_Mutation p.Q441P 0.73 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YC-06 1 197032183 197032183 T C F13B Silent p.K23K 0.20 TCGA-FR-A8YC-06 1 197390668 197390668 G A CRB1 Silent p.V570V 0.71 TCGA-FR-A8YC-06 1 197404673 197404673 C T CRB1 Missense_Mutation p.A1227V 0.66 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 1 198509793 198509793 C G ATP6V1G3 5'UTR 0.53 TCGA-FR-A8YC-06 1 200826468 200826468 C T CAMSAP2 Silent p.S1349S 0.71 TCGA-FR-A8YC-06 1 200880818 200880818 C T C1orf106 Silent p.S399S 0.73 TCGA-FR-A8YC-06 1 200880924 200880924 G A C1orf106 Missense_Mutation p.G435R 0.59 tolerated(0.17) benign(0.265) TCGA-FR-A8YC-06 1 200961443 200961443 G A KIF21B Silent p.I784I 0.16 TCGA-FR-A8YC-06 1 200972835 200972835 G A KIF21B Missense_Mutation p.A364V 0.19 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 1 201010707 201010707 C T CACNA1S Missense_Mutation p.E1687K 0.30 tolerated_low_confidence(0.07) benign(0.002) TCGA-FR-A8YC-06 1 201047036 201047036 G A CACNA1S Silent p.I530I 0.68 TCGA-FR-A8YC-06 1 201115867 201115867 C T TMEM9 Splice_Site p.X89_splice 0.11 TCGA-FR-A8YC-06 1 201980374 201980374 C T ELF3 Missense_Mutation p.A37V 0.07 tolerated(0.29) benign(0.075) TCGA-FR-A8YC-06 1 202119547 202119547 C T PTPN7 Missense_Mutation p.G399E 0.63 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 202976926 202976926 C T TMEM183A Missense_Mutation p.S45L 0.06 tolerated(0.09) benign(0.018) TCGA-FR-A8YC-06 1 20302093 20302093 G A PLA2G2A 3'UTR 0.30 TCGA-FR-A8YC-06 1 203452820 203452820 C T PRELP Missense_Mutation p.P170S 0.70 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 203452821 203452821 C T PRELP Missense_Mutation p.P170L 0.70 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 203453085 203453085 C T PRELP Missense_Mutation p.P258L 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 204226950 204226950 C T PLEKHA6 Missense_Mutation p.G352D 0.64 tolerated(0.16) benign(0.049) TCGA-FR-A8YC-06 1 204234138 204234138 G A PLEKHA6 Missense_Mutation p.P105S 0.16 tolerated(0.16) benign(0.23) TCGA-FR-A8YC-06 1 204587821 204587821 G A LRRN2 Nonsense_Mutation p.Q434* 0.63 TCGA-FR-A8YC-06 1 204956506 204956506 C T NFASC Intron 0.66 TCGA-FR-A8YC-06 1 205041094 205041094 G A CNTN2 Missense_Mutation p.G855E 0.71 tolerated(0.31) probably_damaging(0.964) TCGA-FR-A8YC-06 1 205308392 205308392 G A KLHDC8A Silent p.G229G 0.19 TCGA-FR-A8YC-06 1 206784648 206784648 C T EIF2D Missense_Mutation p.E46K 0.55 deleterious(0.04) benign(0.065) TCGA-FR-A8YC-06 1 207131964 207131964 G A FCAMR Missense_Mutation p.P544L 0.10 tolerated(1) benign(0) TCGA-FR-A8YC-06 1 207271577 207271577 G A C4BPB Missense_Mutation p.E196K 0.08 tolerated(0.16) benign(0.012) TCGA-FR-A8YC-06 1 207870952 207870952 G A CR1L Missense_Mutation p.D323N 0.67 deleterious(0.04) probably_damaging(0.978) TCGA-FR-A8YC-06 1 208383744 208383744 G A PLXNA2 Missense_Mutation p.P418S 0.21 tolerated(0.06) benign(0.014) TCGA-FR-A8YC-06 1 211652591 211652591 G A RD3 Silent p.V125V 0.20 TCGA-FR-A8YC-06 1 21221940 21221940 A T EIF4G3 Missense_Mutation p.L635Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 212798754 212798754 G A FAM71A Missense_Mutation p.E179K 0.17 deleterious(0.01) possibly_damaging(0.601) TCGA-FR-A8YC-06 1 212799681 212799681 G A FAM71A Missense_Mutation p.D488N 0.55 tolerated(0.06) benign(0.005) TCGA-FR-A8YC-06 1 212965216 212965216 C T TATDN3 5'UTR 0.73 TCGA-FR-A8YC-06 1 215848420 215848420 G A USH2A Missense_Mutation p.P4278L 0.73 probably_damaging(0.994) TCGA-FR-A8YC-06 1 215955506 215955506 C T USH2A Missense_Mutation p.G3540R 0.73 probably_damaging(0.997) TCGA-FR-A8YC-06 1 215960216 215960216 C T USH2A Missense_Mutation p.E3395K 0.18 benign(0.008) TCGA-FR-A8YC-06 1 215987114 215987114 G A USH2A Nonsense_Mutation p.Q3235* 0.72 TCGA-FR-A8YC-06 1 216017758 216017758 G A USH2A Missense_Mutation p.P3046S 0.73 probably_damaging(1) TCGA-FR-A8YC-06 1 216017759 216017759 G A USH2A Silent p.N3045N 0.75 TCGA-FR-A8YC-06 1 21605832 21605832 G A ECE1 Intron 0.58 TCGA-FR-A8YC-06 1 216371750 216371750 C T USH2A Missense_Mutation p.E1330K 0.65 possibly_damaging(0.794) TCGA-FR-A8YC-06 1 216373131 216373131 C T USH2A Missense_Mutation p.D1217N 0.16 benign(0) TCGA-FR-A8YC-06 1 216380619 216380619 T G USH2A Silent p.P1104P 0.10 TCGA-FR-A8YC-06 1 216497023 216497023 G A USH2A Missense_Mutation p.S448F 0.77 probably_damaging(0.934) TCGA-FR-A8YC-06 1 217604473 217604473 C T GPATCH2 3'UTR 0.17 TCGA-FR-A8YC-06 1 218519999 218519999 T C TGFB2 5'UTR 0.32 TCGA-FR-A8YC-06 1 219384975 219384975 C T LYPLAL1 Missense_Mutation p.P207S 0.58 tolerated(0.09) benign(0.093) TCGA-FR-A8YC-06 1 220971248 220971248 C T MARC1 Silent p.I215I 0.55 TCGA-FR-A8YC-06 1 222717310 222717310 G A HHIPL2 Silent p.F181F 0.21 TCGA-FR-A8YC-06 1 222743931 222743931 A T TAF1A Silent p.S227S 0.16 TCGA-FR-A8YC-06 1 22310772 22310772 C T CELA3B Missense_Mutation p.S197F 0.21 tolerated(0.08) benign(0.002) TCGA-FR-A8YC-06 1 223284504 223284504 G A TLR5 Missense_Mutation p.L624F 0.17 tolerated(0.12) benign(0.003) TCGA-FR-A8YC-06 1 223991102 223991102 G A TP53BP2 Silent p.L234L 0.82 TCGA-FR-A8YC-06 1 225142695 225142695 G T DNAH14 Missense_Mutation p.V38L 0.72 tolerated(0.4) benign(0.002) TCGA-FR-A8YC-06 1 225142696 225142696 T A DNAH14 Missense_Mutation p.V38E 0.73 tolerated(0.13) benign(0.11) TCGA-FR-A8YC-06 1 226125091 226125091 C T LEFTY2 3'UTR 0.11 TCGA-FR-A8YC-06 1 228033214 228033214 C A PRSS38 Silent p.I209I 0.16 TCGA-FR-A8YC-06 1 228034027 228034027 C T PRSS38 3'UTR 0.16 TCGA-FR-A8YC-06 1 228034028 228034028 C T PRSS38 3'UTR 0.16 TCGA-FR-A8YC-06 1 228462284 228462284 G A OBSCN Missense_Mutation p.V2274M 0.15 probably_damaging(0.969) TCGA-FR-A8YC-06 1 228492186 228492186 C T OBSCN Missense_Mutation p.R4729C 0.16 benign(0.109) TCGA-FR-A8YC-06 1 228497248 228497248 C T OBSCN Silent p.L5291L 0.75 TCGA-FR-A8YC-06 1 229737903 229737903 G A TAF5L Intron 0.09 TCGA-FR-A8YC-06 1 23233294 23233294 G A EPHB2 Silent p.T661T 0.28 TCGA-FR-A8YC-06 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.57 tolerated(0.34) benign(0.034) TCGA-FR-A8YC-06 1 233120150 233120150 G A PCNXL2 Missense_Mutation p.A2105V 0.71 tolerated_low_confidence(0.06) benign(0.008) TCGA-FR-A8YC-06 1 233397833 233397833 G A PCNXL2 Silent p.S146S 0.62 TCGA-FR-A8YC-06 1 233490654 233490654 G A MLK4 Missense_Mutation p.G403E 0.19 tolerated(1) benign(0.003) TCGA-FR-A8YC-06 1 233512192 233512192 G A MLK4 Missense_Mutation p.D615N 0.11 deleterious(0) probably_damaging(0.977) TCGA-FR-A8YC-06 1 233515120 233515120 C T MLK4 Missense_Mutation p.P790S 0.19 tolerated(0.25) benign(0.008) TCGA-FR-A8YC-06 1 233515121 233515121 C T MLK4 Missense_Mutation p.P790L 0.19 tolerated(0.22) benign(0.003) TCGA-FR-A8YC-06 1 234367368 234367368 C T SLC35F3 Silent p.F163F 0.70 TCGA-FR-A8YC-06 1 23520141 23520141 T C HTR1D Missense_Mutation p.N191S 0.55 tolerated(0.33) probably_damaging(0.998) TCGA-FR-A8YC-06 1 235594039 235594039 C T TBCE Missense_Mutation p.P194S 0.71 tolerated(0.19) benign(0.253) TCGA-FR-A8YC-06 1 235602087 235602087 C T TBCE Missense_Mutation p.L374F 0.22 tolerated(0.69) benign(0.003) TCGA-FR-A8YC-06 1 236341815 236341815 T C GPR137B Missense_Mutation p.V189A 0.16 tolerated(0.75) benign(0.001) TCGA-FR-A8YC-06 1 237167604 237167604 C T MT1HL1 Silent p.K23K 0.15 TCGA-FR-A8YC-06 1 23760768 23760768 C T ASAP3 Missense_Mutation p.G644R 0.32 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 1 237664175 237664175 C T RYR2 Missense_Mutation p.P790S 0.12 probably_damaging(0.979) TCGA-FR-A8YC-06 1 237777766 237777766 C T RYR2 Missense_Mutation p.P1780S 0.67 probably_damaging(1) TCGA-FR-A8YC-06 1 240071669 240071669 G A CHRM3 Silent p.R306R 0.15 TCGA-FR-A8YC-06 1 240371126 240371126 G A FMN2 Missense_Mutation p.G1005E 0.14 unknown(0) TCGA-FR-A8YC-06 1 240371898 240371898 T A FMN2 Missense_Mutation p.F1262L 0.61 benign(0.229) TCGA-FR-A8YC-06 1 240371978 240371978 C T FMN2 Missense_Mutation p.P1289L 0.43 probably_damaging(1) TCGA-FR-A8YC-06 1 240656258 240656258 C T GREM2 3'UTR 0.89 TCGA-FR-A8YC-06 1 241262042 241262042 C T RGS7 Silent p.R33R 0.26 TCGA-FR-A8YC-06 1 242015637 242015637 C T EXO1 Missense_Mutation p.H69Y 0.75 tolerated(0.59) benign(0.011) TCGA-FR-A8YC-06 1 242030150 242030150 C T EXO1 Missense_Mutation p.H354Y 0.12 tolerated(0.32) benign(0.005) TCGA-FR-A8YC-06 1 243777012 243777012 G A AKT3 Silent p.D219D 0.85 TCGA-FR-A8YC-06 1 24424492 24424492 A T MYOM3 Silent p.I222I 0.35 TCGA-FR-A8YC-06 1 245850587 245850587 G A KIF26B Silent p.E1434E 0.73 TCGA-FR-A8YC-06 1 247264465 247264465 G A ZNF669 Silent p.S202S 0.13 TCGA-FR-A8YC-06 1 247611915 247611915 C T NLRP3 3'UTR 0.46 TCGA-FR-A8YC-06 1 247611916 247611916 C T NLRP3 3'UTR 0.48 TCGA-FR-A8YC-06 1 247769702 247769702 A T OR2G3 Missense_Mutation p.K272M 0.79 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 1 247921370 247921370 G A OR1C1 Silent p.L113L 0.15 TCGA-FR-A8YC-06 1 248084349 248084349 C T OR2T8 Silent p.F10F 0.15 TCGA-FR-A8YC-06 1 248224164 248224164 C T OR2L3 Silent p.L61L 0.14 TCGA-FR-A8YC-06 1 248308908 248308908 T A OR2M5 Silent p.S153S 0.71 TCGA-FR-A8YC-06 1 248366832 248366832 G A OR2M3 Missense_Mutation p.D155N 0.75 tolerated(0.16) benign(0.314) TCGA-FR-A8YC-06 1 248525317 248525317 C T OR2T4 Silent p.F145F 0.69 TCGA-FR-A8YC-06 1 248551610 248551610 G A OR2T6 Missense_Mutation p.R234K 0.64 tolerated(0.12) benign(0.042) TCGA-FR-A8YC-06 1 248616137 248616137 C T OR2T2 Silent p.F13F 0.06 TCGA-FR-A8YC-06 1 248637506 248637506 C T OR2T3 Silent p.I285I 0.40 TCGA-FR-A8YC-06 1 248652008 248652008 T G OR2T5 Missense_Mutation p.L40R 0.14 deleterious(0) probably_damaging(0.91) TCGA-FR-A8YC-06 1 248685533 248685533 G A OR2G6 Missense_Mutation p.E196K 0.69 deleterious(0.01) possibly_damaging(0.775) TCGA-FR-A8YC-06 1 248737204 248737204 G A OR2T34 Silent p.I285I 0.25 TCGA-FR-A8YC-06 1 248756431 248756431 G A OR2T10 Silent p.V213V 0.61 TCGA-FR-A8YC-06 1 248845270 248845270 G A OR14I1 Silent p.F112F 0.09 TCGA-FR-A8YC-06 1 2525368 2525368 G A MMEL1 Silent p.F584F 0.21 TCGA-FR-A8YC-06 1 26080003 26080003 G A MAN1C1 Missense_Mutation p.G288E 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A8YC-06 1 26135205 26135205 C T SEPN1 Silent p.I224I 0.32 TCGA-FR-A8YC-06 1 26510322 26510322 G A CNKSR1 Splice_Site p.X285_splice 0.19 TCGA-FR-A8YC-06 1 26863424 26863424 G A RPS6KA1 Silent p.Q24Q 0.31 TCGA-FR-A8YC-06 1 27059202 27059202 C T ARID1A Silent p.S613S 0.22 TCGA-FR-A8YC-06 1 27426802 27426802 T A SLC9A1 Missense_Mutation p.Q815L 0.14 deleterious_low_confidence(0) benign(0.069) TCGA-FR-A8YC-06 1 28599253 28599253 C T SESN2 Silent p.P233P 0.51 TCGA-FR-A8YC-06 1 2938890 2938890 G A ACTRT2 Missense_Mutation p.D214N 0.21 tolerated(0.16) benign(0.02) TCGA-FR-A8YC-06 1 29585999 29585999 G A PTPRU Missense_Mutation p.V200I 0.34 deleterious(0.01) benign(0.008) TCGA-FR-A8YC-06 1 31206724 31206724 G A LAPTM5 Missense_Mutation p.S247L 0.31 tolerated(0.68) benign(0.013) TCGA-FR-A8YC-06 1 31453009 31453009 A G PUM1 Silent p.G418G 0.36 TCGA-FR-A8YC-06 1 31766188 31766188 G T SNRNP40 Missense_Mutation p.P50Q 0.41 tolerated(0.27) possibly_damaging(0.777) TCGA-FR-A8YC-06 1 32150207 32150207 G A COL16A1 Missense_Mutation p.P693S 0.61 unknown(0) TCGA-FR-A8YC-06 1 32659697 32659697 A G TXLNA Missense_Mutation p.E428G 0.18 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 1 32739926 32739926 G A LCK Intron 0.27 TCGA-FR-A8YC-06 1 3328324 3328324 C T PRDM16 Silent p.S521S 0.19 TCGA-FR-A8YC-06 1 33402664 33402664 G A RNF19B Silent p.L648L 0.50 TCGA-FR-A8YC-06 1 3350302 3350302 C T PRDM16 Missense_Mutation p.S1253F 0.20 deleterious(0.01) probably_damaging(0.926) TCGA-FR-A8YC-06 1 33612706 33612706 T A TRIM62 3'UTR 0.20 TCGA-FR-A8YC-06 1 33745944 33745944 C T ZNF362 Missense_Mutation p.S190F 0.64 deleterious(0.01) benign(0.047) TCGA-FR-A8YC-06 1 34102131 34102131 C T CSMD2 Missense_Mutation p.D1560N 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-FR-A8YC-06 1 34164465 34164465 C T CSMD2 Silent p.G1231G 0.21 TCGA-FR-A8YC-06 1 34174716 34174716 G A CSMD2 Silent p.F1143F 0.32 TCGA-FR-A8YC-06 1 34673784 34673784 G A C1orf94 Silent p.R491R 0.31 TCGA-FR-A8YC-06 1 35250578 35250578 C T GJB3 Missense_Mutation p.S72F 0.73 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 35477594 35477594 G A ZMYM6 Missense_Mutation p.S320L 0.30 tolerated(0.33) benign(0.004) TCGA-FR-A8YC-06 1 35944696 35944696 G A KIAA0319L Missense_Mutation p.P262S 0.49 tolerated(0.27) benign(0.002) TCGA-FR-A8YC-06 1 36023704 36023704 C T NCDN 5'UTR 0.61 TCGA-FR-A8YC-06 1 36557596 36557596 C T ADPRHL2 Missense_Mutation p.A201V 0.25 deleterious(0.02) possibly_damaging(0.9) TCGA-FR-A8YC-06 1 36788145 36788145 C T EVA1B Silent p.E83E 0.62 TCGA-FR-A8YC-06 1 36935268 36935268 C T CSF3R Missense_Mutation p.G487R 0.25 deleterious(0.04) benign(0.029) TCGA-FR-A8YC-06 1 38022523 38022523 G A DNALI1 5'UTR 0.52 TCGA-FR-A8YC-06 1 38022524 38022524 G A DNALI1 5'UTR 0.51 TCGA-FR-A8YC-06 1 38181738 38181738 C T EPHA10 3'UTR 0.33 TCGA-FR-A8YC-06 1 38305696 38305696 G T MTF1 Missense_Mutation p.F181L 0.54 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 1 38483345 38483345 A T UTP11L Missense_Mutation p.Y44F 0.26 tolerated(0.25) benign(0.052) TCGA-FR-A8YC-06 1 39341436 39341436 G A GJA9 Missense_Mutation p.A112V 0.54 tolerated(0.26) benign(0.024) TCGA-FR-A8YC-06 1 39876332 39876332 C T KIAA0754 5'UTR 0.31 TCGA-FR-A8YC-06 1 40980385 40980385 C T EXO5 Missense_Mutation p.P57S 0.26 tolerated(0.6) benign(0.001) TCGA-FR-A8YC-06 1 43803879 43803879 C T MPL Silent p.Y63Y 0.31 TCGA-FR-A8YC-06 1 43855557 43855557 C T SZT2 5'Flank 0.19 TCGA-FR-A8YC-06 1 44075070 44075070 C T PTPRF Missense_Mutation p.P1292S 0.55 tolerated(0.13) benign(0.015) TCGA-FR-A8YC-06 1 44438094 44438094 C T DPH2 Silent p.F451F 0.31 TCGA-FR-A8YC-06 1 45316603 45316603 G A EIF2B3 3'UTR 0.29 TCGA-FR-A8YC-06 1 45965908 45965908 C T MMACHC 5'UTR 0.23 TCGA-FR-A8YC-06 1 46744988 46744988 C T LRRC41 Intron 0.18 TCGA-FR-A8YC-06 1 46871396 46871396 G A FAAH Missense_Mutation p.G239R 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 47075204 47075204 G A MOB3C 3'UTR 0.50 TCGA-FR-A8YC-06 1 47280931 47280931 C T CYP4B1 Silent p.F356F 0.21 TCGA-FR-A8YC-06 1 47399888 47399888 C T CYP4A11 Missense_Mutation p.E350K 0.55 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 47501542 47501542 C T CYP4X1 Missense_Mutation p.S186L 0.25 tolerated(1) benign(0) TCGA-FR-A8YC-06 1 47515928 47515928 C T CYP4X1 3'UTR 0.48 TCGA-FR-A8YC-06 1 47583579 47583579 C T CYP4Z1 Silent p.I497I 0.24 TCGA-FR-A8YC-06 1 49332876 49332876 C T AGBL4 Silent p.T207T 0.53 TCGA-FR-A8YC-06 1 54512970 54512970 A G TMEM59 Silent p.L89L 0.64 TCGA-FR-A8YC-06 1 55277783 55277783 C T C1orf177 Missense_Mutation p.S228F 0.26 tolerated(0.16) possibly_damaging(0.824) TCGA-FR-A8YC-06 1 55595169 55595169 G A USP24 Missense_Mutation p.L1206F 0.60 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 1 57258224 57258224 G A C1orf168 Missense_Mutation p.P88S 0.30 tolerated(0.06) benign(0.004) TCGA-FR-A8YC-06 1 57351651 57351651 A T C8A Missense_Mutation p.M303L 0.29 deleterious(0.04) probably_damaging(0.971) TCGA-FR-A8YC-06 1 57383427 57383427 G C C8A 3'UTR 0.38 TCGA-FR-A8YC-06 1 57399146 57399146 C T C8B Missense_Mutation p.E472K 0.26 deleterious(0) probably_damaging(0.973) TCGA-FR-A8YC-06 1 57415237 57415237 G A C8B Silent p.F285F 0.21 TCGA-FR-A8YC-06 1 6219462 6219462 C T CHD5 Silent p.K107K 0.50 TCGA-FR-A8YC-06 1 6488447 6488447 C T ESPN Silent p.P152P 0.51 TCGA-FR-A8YC-06 1 65095151 65095151 G A CACHD1 Missense_Mutation p.E160K 0.25 tolerated(0.14) possibly_damaging(0.467) TCGA-FR-A8YC-06 1 65321305 65321305 G A JAK1 Missense_Mutation p.S512L 0.44 tolerated(0.07) benign(0.178) TCGA-FR-A8YC-06 1 6634781 6634781 G A TAS1R1 Missense_Mutation p.E197K 0.27 tolerated(0.56) benign(0.029) TCGA-FR-A8YC-06 1 67786077 67786077 C T IL12RB2 Missense_Mutation p.S9L 0.28 tolerated(0.15) benign(0.033) TCGA-FR-A8YC-06 1 68624904 68624904 C G WLS Missense_Mutation p.V134L 0.47 tolerated(0.12) possibly_damaging(0.834) TCGA-FR-A8YC-06 1 70486792 70486792 G A LRRC7 Missense_Mutation p.E471K 0.34 deleterious(0) benign(0.086) TCGA-FR-A8YC-06 1 70493873 70493873 G A LRRC7 Missense_Mutation p.R567Q 0.57 deleterious(0.04) probably_damaging(0.99) TCGA-FR-A8YC-06 1 74621474 74621474 G A LRRIQ3 Missense_Mutation p.S217L 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 1 74648546 74648546 C T LRRIQ3 Splice_Site p.X84_splice 0.52 TCGA-FR-A8YC-06 1 75038084 75038084 C T C1orf173 Missense_Mutation p.E1104K 0.22 tolerated(0.63) benign(0.006) TCGA-FR-A8YC-06 1 75038555 75038555 C T C1orf173 Missense_Mutation p.E947K 0.22 deleterious(0.01) possibly_damaging(0.833) TCGA-FR-A8YC-06 1 75055729 75055729 G A C1orf173 Missense_Mutation p.H588Y 0.57 tolerated(0.08) possibly_damaging(0.897) TCGA-FR-A8YC-06 1 75684976 75684976 T A SLC44A5 Missense_Mutation p.H411L 0.22 tolerated(0.35) benign(0) TCGA-FR-A8YC-06 1 76262881 76262881 C T MSH4 Missense_Mutation p.P71S 0.33 tolerated_low_confidence(0.29) benign(0.001) TCGA-FR-A8YC-06 1 76397847 76397847 C T ASB17 Missense_Mutation p.E44K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-FR-A8YC-06 1 78430557 78430557 G A FUBP1 Nonsense_Mutation p.Q245* 0.61 TCGA-FR-A8YC-06 1 79401989 79401989 C T ELTD1 Missense_Mutation p.D290N 0.23 tolerated(0.43) benign(0.005) TCGA-FR-A8YC-06 1 8073970 8073970 C T ERRFI1 Missense_Mutation p.G230E 0.19 tolerated(0.38) benign(0.005) TCGA-FR-A8YC-06 1 8073971 8073971 C T ERRFI1 Missense_Mutation p.G230R 0.15 tolerated(0.25) benign(0.008) TCGA-FR-A8YC-06 1 82408808 82408808 G C LPHN2 Missense_Mutation p.E185Q 0.33 deleterious(0.04) possibly_damaging(0.747) TCGA-FR-A8YC-06 1 82446513 82446513 G A LPHN2 Intron 0.55 TCGA-FR-A8YC-06 1 82456514 82456514 G A LPHN2 Silent p.L1299L 0.30 TCGA-FR-A8YC-06 1 861358 861358 T A SAMD11 Missense_Mutation p.C13S 0.16 deleterious(0.05) probably_damaging(0.998) TCGA-FR-A8YC-06 1 87026026 87026026 G A CLCA4 Missense_Mutation p.E145K 0.58 tolerated(0.81) benign(0.219) TCGA-FR-A8YC-06 1 89318833 89318833 T C GTF2B 3'UTR 0.60 TCGA-FR-A8YC-06 1 91405744 91405744 C T ZNF644 Silent p.K389K 0.19 TCGA-FR-A8YC-06 1 94048298 94048298 G A BCAR3 Missense_Mutation p.P416S 0.19 tolerated(0.16) benign(0.077) TCGA-FR-A8YC-06 1 94354644 94354644 C T GCLM Missense_Mutation p.V243M 0.69 tolerated(0.12) benign(0.195) TCGA-FR-A8YC-06 1 94544930 94544930 C T ABCA4 Missense_Mutation p.G396E 0.50 deleterious(0) probably_damaging(0.995) TCGA-FR-A8YC-06 1 94568698 94568698 C T ABCA4 Missense_Mutation p.G148E 0.28 deleterious(0.01) benign(0.134) TCGA-FR-A8YC-06 1 9658573 9658573 C T TMEM201 Missense_Mutation p.P166S 0.51 tolerated(0.09) probably_damaging(1) TCGA-FR-A8YC-06 1 97700538 97700538 C T DPYD Missense_Mutation p.R771K 0.30 tolerated(0.31) possibly_damaging(0.477) TCGA-FR-A8YC-06 20 126304 126304 G A DEFB126 Missense_Mutation p.A103T 0.55 tolerated(0.99) unknown(0) TCGA-FR-A8YC-06 20 1293238 1293238 G A SDCBP2 Missense_Mutation p.R185W 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.26 tolerated(0.25) probably_damaging(0.996) TCGA-FR-A8YC-06 20 13869151 13869151 C T SEL1L2 Missense_Mutation p.G186E 0.41 deleterious(0) probably_damaging(0.965) TCGA-FR-A8YC-06 20 1629960 1629960 G A SIRPG Silent p.T56T 0.26 TCGA-FR-A8YC-06 20 16729571 16729571 A T OTOR Missense_Mutation p.N59Y 0.62 deleterious(0) probably_damaging(0.974) TCGA-FR-A8YC-06 20 17475613 17475613 C T BFSP1 Silent p.K368K 0.53 TCGA-FR-A8YC-06 20 17705743 17705743 G A BANF2 Missense_Mutation p.D32N 0.60 tolerated(0.82) benign(0.13) TCGA-FR-A8YC-06 20 20033134 20033134 C T CRNKL1 Silent p.A112A 0.18 TCGA-FR-A8YC-06 20 23432486 23432486 C T CST11 Silent p.T100T 0.20 TCGA-FR-A8YC-06 20 2413158 2413158 G A TGM6 Missense_Mutation p.E664K 0.63 deleterious(0.02) probably_damaging(0.968) TCGA-FR-A8YC-06 20 26084137 26084137 C T NCOR1P1 RNA 0.29 TCGA-FR-A8YC-06 20 2819254 2819254 G A PCED1A Silent p.F194F 0.40 TCGA-FR-A8YC-06 20 29847329 29847329 G A DEFB115 Missense_Mutation p.R54K 0.29 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 20 29891252 29891252 G A DEFB116 Silent p.G24G 0.25 TCGA-FR-A8YC-06 20 30436191 30436191 C T FOXS1 5'Flank 0.34 TCGA-FR-A8YC-06 20 30584579 30584579 C T XKR7 Silent p.S353S 0.31 TCGA-FR-A8YC-06 20 30674449 30674449 C T HCK Missense_Mutation p.T285I 0.67 deleterious(0.04) possibly_damaging(0.908) TCGA-FR-A8YC-06 20 31375079 31375079 C T DNMT3B Missense_Mutation p.P159L 0.53 tolerated_low_confidence(0.53) benign(0.003) TCGA-FR-A8YC-06 20 31622688 31622688 T A BPIFB6 Missense_Mutation p.L141Q 0.24 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 20 330383 330383 C T NRSN2 Silent p.F32F 0.61 TCGA-FR-A8YC-06 20 33501949 33501949 G A ACSS2 Missense_Mutation p.E232K 0.23 tolerated(0.57) benign(0.274) TCGA-FR-A8YC-06 20 34025546 34025546 G A GDF5 Missense_Mutation p.R55W 0.35 deleterious_low_confidence(0) benign(0.336) TCGA-FR-A8YC-06 20 34618469 34618469 C T CNBD2 Missense_Mutation p.R540C 0.24 tolerated(0.1) benign(0.004) TCGA-FR-A8YC-06 20 34828160 34828160 C T AAR2 Missense_Mutation p.P124S 0.54 deleterious(0.03) probably_damaging(0.981) TCGA-FR-A8YC-06 20 35060360 35060360 C T DLGAP4 Silent p.F80F 0.48 TCGA-FR-A8YC-06 20 35517799 35517799 G A TLDC2 3'UTR 0.62 TCGA-FR-A8YC-06 20 36997719 36997719 G A LBP Silent p.G354G 0.48 TCGA-FR-A8YC-06 20 37174920 37174920 A G RALGAPB Missense_Mutation p.S917G 0.26 tolerated(0.14) benign(0.147) TCGA-FR-A8YC-06 20 3766845 3766845 T C CENPB Missense_Mutation p.K96E 0.23 tolerated(0.14) unknown(0) TCGA-FR-A8YC-06 20 3893187 3893187 C T PANK2 Missense_Mutation p.R440C 0.59 deleterious(0) probably_damaging(0.935) TCGA-FR-A8YC-06 20 40789994 40789994 C T PTPRT Missense_Mutation p.E894K 0.49 deleterious(0.01) benign(0.004) TCGA-FR-A8YC-06 20 41408873 41408873 G A PTPRT Missense_Mutation p.L185F 0.23 tolerated(0.07) possibly_damaging(0.834) TCGA-FR-A8YC-06 20 41419868 41419868 G A PTPRT Silent p.L151L 0.56 TCGA-FR-A8YC-06 20 42635286 42635286 G A TOX2 Missense_Mutation p.E89K 0.49 tolerated(0.11) benign(0.15) TCGA-FR-A8YC-06 20 42694452 42694452 C T TOX2 Missense_Mutation p.S354F 0.59 deleterious(0) possibly_damaging(0.73) TCGA-FR-A8YC-06 20 44048200 44048200 C T PIGT Silent p.S217S 0.46 TCGA-FR-A8YC-06 20 44236631 44236631 G A WFDC9 3'UTR 0.61 TCGA-FR-A8YC-06 20 44672342 44672342 C T SLC12A5 Silent p.I459I 0.19 TCGA-FR-A8YC-06 20 4768299 4768299 C T RASSF2 Missense_Mutation p.V265M 0.57 deleterious(0.04) probably_damaging(0.935) TCGA-FR-A8YC-06 20 48129662 48129662 G A PTGIS Silent p.P387P 0.31 TCGA-FR-A8YC-06 20 4843513 4843513 A T SLC23A2 Missense_Mutation p.M466K 0.21 deleterious(0) probably_damaging(0.979) TCGA-FR-A8YC-06 20 49195093 49195093 C T PTPN1 Missense_Mutation p.P210L 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 20 49576060 49576060 C T MOCS3 Silent p.F227F 0.57 TCGA-FR-A8YC-06 20 50406810 50406810 G A SALL4 Missense_Mutation p.P738S 0.57 tolerated(0.83) benign(0.024) TCGA-FR-A8YC-06 20 50408729 50408729 G A SALL4 Missense_Mutation p.P98L 0.24 tolerated(0.06) possibly_damaging(0.628) TCGA-FR-A8YC-06 20 51870181 51870181 G A TSHZ2 Missense_Mutation p.G62S 0.31 tolerated(0.56) possibly_damaging(0.884) TCGA-FR-A8YC-06 20 51872865 51872865 G A TSHZ2 Missense_Mutation p.M956I 0.58 deleterious(0.02) probably_damaging(0.989) TCGA-FR-A8YC-06 20 52788148 52788148 C T CYP24A1 Missense_Mutation p.E171K 0.23 deleterious(0.02) possibly_damaging(0.883) TCGA-FR-A8YC-06 20 55206352 55206352 C T TFAP2C Missense_Mutation p.S47F 0.57 deleterious(0) benign(0.08) TCGA-FR-A8YC-06 20 56098234 56098234 A T CTCFL Missense_Mutation p.I215N 0.56 deleterious(0.01) probably_damaging(0.919) TCGA-FR-A8YC-06 20 56137879 56137879 G A PCK1 Silent p.T178T 0.21 TCGA-FR-A8YC-06 20 56188178 56188178 C T ZBP1 Intron 0.23 TCGA-FR-A8YC-06 20 57768208 57768208 G A ZNF831 Missense_Mutation p.E712K 0.33 tolerated(0.49) benign(0.023) TCGA-FR-A8YC-06 20 57768866 57768866 C T ZNF831 Missense_Mutation p.A931V 0.33 tolerated(0.1) benign(0.014) TCGA-FR-A8YC-06 20 57769004 57769004 C A ZNF831 Missense_Mutation p.A977E 0.27 deleterious(0.01) benign(0.403) TCGA-FR-A8YC-06 20 57829442 57829442 G A ZNF831 Missense_Mutation p.E1560K 0.32 tolerated(0.06) benign(0) TCGA-FR-A8YC-06 20 57829739 57829739 C T ZNF831 Nonsense_Mutation p.R1659* 0.50 TCGA-FR-A8YC-06 20 58519061 58519061 G A FAM217B Silent p.Q21Q 0.29 TCGA-FR-A8YC-06 20 5903544 5903544 G A CHGB Missense_Mutation p.E252K 0.50 deleterious(0.03) possibly_damaging(0.893) TCGA-FR-A8YC-06 20 6096495 6096495 C T FERMT1 Silent p.V116V 0.27 TCGA-FR-A8YC-06 20 61588840 61588840 C T SLC17A9 Missense_Mutation p.S102F 0.54 tolerated(0.45) benign(0.004) TCGA-FR-A8YC-06 20 61981042 61981042 A G CHRNA4 Missense_Mutation p.I574T 0.39 deleterious(0) possibly_damaging(0.653) TCGA-FR-A8YC-06 20 61981180 61981180 G A CHRNA4 Missense_Mutation p.P528L 0.57 tolerated(0.21) benign(0.04) TCGA-FR-A8YC-06 20 62126332 62126332 G A EEF1A2 Silent p.I149I 0.48 TCGA-FR-A8YC-06 20 62172239 62172239 G A SRMS Missense_Mutation p.P467S 0.19 deleterious(0.04) possibly_damaging(0.745) TCGA-FR-A8YC-06 20 9424641 9424641 C T PLCB4 Silent p.I914I 0.32 TCGA-FR-A8YC-06 20 9547019 9547019 G A PAK7 Nonsense_Mutation p.R335* 0.24 TCGA-FR-A8YC-06 21 10862924 10862924 G A IGHV1OR21-1 Missense_Mutation p.D74N 0.17 tolerated(0.97) benign(0.004) TCGA-FR-A8YC-06 21 10906979 10906979 G A TPTE Missense_Mutation p.P528S 0.19 tolerated(0.74) benign(0.03) TCGA-FR-A8YC-06 21 10920125 10920125 T A TPTE Missense_Mutation p.T377S 0.16 tolerated(1) benign(0.041) TCGA-FR-A8YC-06 21 10920160 10920160 C T TPTE Missense_Mutation p.S365N 0.17 deleterious(0) probably_damaging(0.934) TCGA-FR-A8YC-06 21 10933874 10933874 C T TPTE Silent p.A335A 0.23 TCGA-FR-A8YC-06 21 10933930 10933930 C T TPTE Missense_Mutation p.V317I 0.11 tolerated(0.18) benign(0.216) TCGA-FR-A8YC-06 21 10942770 10942770 G A TPTE Missense_Mutation p.S224L 0.15 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 21 10971304 10971304 C T TPTE Missense_Mutation p.G18D 0.14 tolerated_low_confidence(0.75) benign(0.005) TCGA-FR-A8YC-06 21 10971305 10971305 C T TPTE Missense_Mutation p.G18S 0.16 tolerated_low_confidence(0.92) benign(0) TCGA-FR-A8YC-06 21 10996093 10996093 C T TPTE RNA 0.17 TCGA-FR-A8YC-06 21 11038790 11038790 C T BAGE2 RNA 0.24 TCGA-FR-A8YC-06 21 11039088 11039088 C T BAGE2 RNA 0.09 TCGA-FR-A8YC-06 21 11039189 11039189 G A BAGE2 RNA 0.05 TCGA-FR-A8YC-06 21 11039208 11039208 G A BAGE2 RNA 0.06 TCGA-FR-A8YC-06 21 11039337 11039337 G A BAGE2 RNA 0.04 TCGA-FR-A8YC-06 21 15326416 15326416 C T ANKRD20A11P RNA 0.27 TCGA-FR-A8YC-06 21 15558340 15558340 C T LIPI Silent p.G182G 0.23 TCGA-FR-A8YC-06 21 15746345 15746345 C T HSPA13 Missense_Mutation p.D337N 0.21 tolerated(0.48) benign(0.001) TCGA-FR-A8YC-06 21 27130323 27130323 C T GABPA Missense_Mutation p.P186S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 21 27254014 27254014 T C APP Silent p.P760P 0.57 TCGA-FR-A8YC-06 21 27852594 27852594 G A CYYR1 Missense_Mutation p.P111S 0.25 tolerated(0.15) benign(0.097) TCGA-FR-A8YC-06 21 30329112 30329112 G C LTN1 Silent p.V1063V 0.34 TCGA-FR-A8YC-06 21 30408635 30408635 C T USP16 Nonsense_Mutation p.Q130* 0.57 TCGA-FR-A8YC-06 21 30521536 30521536 C T MAP3K7CL Missense_Mutation p.P133S 0.33 tolerated(0.07) benign(0.301) TCGA-FR-A8YC-06 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.22 TCGA-FR-A8YC-06 21 31802732 31802732 C T KRTAP13-4 Missense_Mutation p.L47F 0.21 tolerated(0.06) benign(0.443) TCGA-FR-A8YC-06 21 32508341 32508341 C T TIAM1 Missense_Mutation p.G1265R 0.40 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 21 34726029 34726029 C T IFNAR1 Silent p.F460F 0.20 TCGA-FR-A8YC-06 21 35209331 35209331 C T ITSN1 Intron 0.29 TCGA-FR-A8YC-06 21 35467481 35467481 A T SLC5A3 5'UTR 0.30 TCGA-FR-A8YC-06 21 38132086 38132086 C T HLCS Silent p.K579K 0.28 TCGA-FR-A8YC-06 21 38467654 38467654 G A TTC3 Missense_Mutation p.G231E 0.23 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 21 38525540 38525540 C T TTC3 Silent p.P901P 0.22 TCGA-FR-A8YC-06 21 38612855 38612855 T G DSCR3 Missense_Mutation p.N48T 0.53 tolerated(0.09) benign(0.219) TCGA-FR-A8YC-06 21 40608529 40608529 T A BRWD1 Nonsense_Mutation p.K920* 0.27 TCGA-FR-A8YC-06 21 40778314 40778314 C T LCA5L Missense_Mutation p.D503N 0.44 tolerated(0.46) benign(0.022) TCGA-FR-A8YC-06 21 40778507 40778507 G A LCA5L Silent p.V438V 0.54 TCGA-FR-A8YC-06 21 41385226 41385226 C T DSCAM Missense_Mutation p.G1925E 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.468) TCGA-FR-A8YC-06 21 41414566 41414566 A C DSCAM Missense_Mutation p.S1806R 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 21 41539158 41539158 C T DSCAM Missense_Mutation p.R1002K 0.23 tolerated(0.52) benign(0.008) TCGA-FR-A8YC-06 21 41648178 41648178 G A DSCAM Silent p.F734F 0.34 TCGA-FR-A8YC-06 21 42080497 42080497 G A DSCAM Nonsense_Mutation p.Q82* 0.22 TCGA-FR-A8YC-06 21 42866338 42866338 G A TMPRSS2 Silent p.S98S 0.28 TCGA-FR-A8YC-06 21 43279235 43279235 G A PRDM15 Silent p.V378V 0.21 TCGA-FR-A8YC-06 21 43412249 43412249 G A ZBTB21 Silent p.S652S 0.24 TCGA-FR-A8YC-06 21 43413120 43413120 G A ZBTB21 Missense_Mutation p.S362F 0.24 tolerated(0.09) benign(0.365) TCGA-FR-A8YC-06 21 43505457 43505457 G A UMODL1 Missense_Mutation p.D180N 0.23 deleterious(0.03) possibly_damaging(0.728) TCGA-FR-A8YC-06 21 43547287 43547287 G A UMODL1 Silent p.T1283T 0.55 TCGA-FR-A8YC-06 21 43802297 43802297 G A TMPRSS3 Silent p.L277L 0.58 TCGA-FR-A8YC-06 21 43833541 43833541 G A UBASH3A Nonsense_Mutation p.W192* 0.23 TCGA-FR-A8YC-06 21 43963584 43963584 C T SLC37A1 Missense_Mutation p.S201F 0.56 deleterious(0) probably_damaging(0.97) TCGA-FR-A8YC-06 21 45472270 45472270 C T TRAPPC10 Missense_Mutation p.A132V 0.29 tolerated(0.58) benign(0.231) TCGA-FR-A8YC-06 21 45837831 45837831 G A TRPM2 Silent p.Q1056Q 0.56 TCGA-FR-A8YC-06 21 45994915 45994915 C T KRTAP10-4 3'UTR 0.43 TCGA-FR-A8YC-06 21 46306696 46306696 C T ITGB2 Silent p.E734E 0.20 TCGA-FR-A8YC-06 21 46327001 46327001 C T ITGB2 Missense_Mutation p.G53R 0.28 tolerated(0.28) benign(0.202) TCGA-FR-A8YC-06 21 46554733 46554733 C T ADARB1 Intron 0.37 TCGA-FR-A8YC-06 21 47355207 47355207 C T PCBP3 Silent p.T299T 0.17 TCGA-FR-A8YC-06 21 47692634 47692634 G A MCM3AP Missense_Mutation p.S769F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 21 47700036 47700036 G A MCM3AP Missense_Mutation p.P513L 0.41 tolerated(0.49) benign(0.006) TCGA-FR-A8YC-06 21 47700037 47700037 G A MCM3AP Missense_Mutation p.P513S 0.43 tolerated(0.39) benign(0.01) TCGA-FR-A8YC-06 21 47954024 47954024 G A DIP2A Missense_Mutation p.E513K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 22 16256620 16256620 C T POTEH 3'UTR 0.08 TCGA-FR-A8YC-06 22 16449124 16449124 G A OR11H1 Silent p.L227L 0.32 TCGA-FR-A8YC-06 22 17071745 17071745 C T CCT8L2 3'UTR 0.36 TCGA-FR-A8YC-06 22 17280878 17280878 C T XKR3 Silent p.L124L 0.20 TCGA-FR-A8YC-06 22 17446073 17446073 C T GAB4 Silent p.G458G 0.27 TCGA-FR-A8YC-06 22 18028909 18028909 C T CECR2 Missense_Mutation p.S1290L 0.19 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-FR-A8YC-06 22 18918530 18918530 G A PRODH Missense_Mutation p.P152L 0.43 tolerated(0.16) benign(0.098) TCGA-FR-A8YC-06 22 20079485 20079485 T A DGCR8 Missense_Mutation p.F533Y 0.50 deleterious(0.05) probably_damaging(0.916) TCGA-FR-A8YC-06 22 20723827 20723827 C T USP41 Silent p.K173K 0.45 TCGA-FR-A8YC-06 22 20921065 20921065 C T MED15 Silent p.L334L 0.15 TCGA-FR-A8YC-06 22 21152967 21152967 G A PI4KA Silent p.I671I 0.42 TCGA-FR-A8YC-06 22 21799964 21799964 C A HIC2 Silent p.T260T 0.36 TCGA-FR-A8YC-06 22 21799983 21799983 C T HIC2 Missense_Mutation p.P267S 0.52 tolerated(0.06) possibly_damaging(0.641) TCGA-FR-A8YC-06 22 21990917 21990917 C T CCDC116 Missense_Mutation p.P467L 0.22 deleterious(0) probably_damaging(0.978) TCGA-FR-A8YC-06 22 22724317 22724317 T G IGLV7-46 Missense_Mutation p.D71E 0.16 TCGA-FR-A8YC-06 22 22730712 22730712 G A IGLV5-45 Silent p.L69L 0.11 TCGA-FR-A8YC-06 22 22749647 22749647 C T IGLV7-43 Silent p.F57F 0.10 TCGA-FR-A8YC-06 22 23165529 23165529 G A IGLV2-8 Missense_Mutation p.G34R 0.29 deleterious_low_confidence(0) possibly_damaging(0.705) TCGA-FR-A8YC-06 22 23213957 23213957 G A IGLV4-3 Silent p.K38K 0.14 TCGA-FR-A8YC-06 22 24086987 24086987 G A ZNF70 Missense_Mutation p.P114L 0.52 tolerated(0.16) benign(0.006) TCGA-FR-A8YC-06 22 24460640 24460640 C T CABIN1 Missense_Mutation p.S676F 0.57 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 22 24720203 24720203 C T SPECC1L Nonsense_Mutation p.R652* 0.26 TCGA-FR-A8YC-06 22 25264402 25264402 C T SGSM1 Missense_Mutation p.R352C 0.26 deleterious(0) possibly_damaging(0.582) TCGA-FR-A8YC-06 22 26242217 26242217 G A MYO18B Silent p.R1173R 0.28 TCGA-FR-A8YC-06 22 26423444 26423444 C T MYO18B Missense_Mutation p.P2502S 0.52 tolerated(0.07) possibly_damaging(0.736) TCGA-FR-A8YC-06 22 29130442 29130442 G A CHEK2 Missense_Mutation p.P90S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 22 29627125 29627125 C T EMID1 Silent p.L194L 0.55 TCGA-FR-A8YC-06 22 29957603 29957603 C T NIPSNAP1 Silent p.Q157Q 0.50 TCGA-FR-A8YC-06 22 30077491 30077491 C T NF2 Silent p.I546I 0.32 TCGA-FR-A8YC-06 22 30803097 30803097 G A SEC14L2 Missense_Mutation p.R63Q 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-FR-A8YC-06 22 30866239 30866239 C T SEC14L3 Missense_Mutation p.R45Q 0.43 tolerated(0.1) benign(0.171) TCGA-FR-A8YC-06 22 31673078 31673078 G A LIMK2 Silent p.L671L 0.31 TCGA-FR-A8YC-06 22 31837961 31837961 G A EIF4ENIF1 Nonsense_Mutation p.R784* 0.29 TCGA-FR-A8YC-06 22 32937672 32937672 G A SYN3 Nonsense_Mutation p.Q268* 0.62 TCGA-FR-A8YC-06 22 36537265 36537265 G A APOL3 Missense_Mutation p.P398S 0.52 tolerated_low_confidence(0.21) possibly_damaging(0.641) TCGA-FR-A8YC-06 22 36661573 36661573 G A APOL1 Missense_Mutation p.G247R 0.41 tolerated(0.07) benign(0.01) TCGA-FR-A8YC-06 22 37322094 37322094 C T CSF2RB Missense_Mutation p.P89L 0.25 tolerated(0.16) benign(0.003) TCGA-FR-A8YC-06 22 38109389 38109389 C T TRIOBP Missense_Mutation p.P143S 0.19 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FR-A8YC-06 22 38120688 38120688 T C TRIOBP Missense_Mutation p.S709P 0.30 tolerated_low_confidence(0.07) benign(0.307) TCGA-FR-A8YC-06 22 38870562 38870562 C T KDELR3 Silent p.L42L 0.30 TCGA-FR-A8YC-06 22 39067103 39067103 G A CBY1 Silent p.R71R 0.68 TCGA-FR-A8YC-06 22 39908268 39908277 GGCCAGGAAG - MIEF1 Frame_Shift_Del p.K121* 0.35 TCGA-FR-A8YC-06 22 39917531 39917531 T C ATF4 Silent p.A27A 0.55 TCGA-FR-A8YC-06 22 40425565 40425565 C T FAM83F Missense_Mutation p.S500F 0.72 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-FR-A8YC-06 22 40719176 40719176 C T TNRC6B Silent p.P1811P 0.35 TCGA-FR-A8YC-06 22 40815073 40815073 G A MKL1 Missense_Mutation p.P457S 0.44 deleterious(0.03) probably_damaging(0.986) TCGA-FR-A8YC-06 22 41574577 41574577 C T EP300 Nonsense_Mutation p.Q2288* 0.28 TCGA-FR-A8YC-06 22 41735126 41735126 C T ZC3H7B Silent p.T249T 0.25 TCGA-FR-A8YC-06 22 41864681 41864681 G A PHF5A 5'UTR 0.27 TCGA-FR-A8YC-06 22 41921268 41921268 C T ACO2 Silent p.S559S 0.68 TCGA-FR-A8YC-06 22 41923168 41923168 A G POLR3H 3'UTR 0.50 TCGA-FR-A8YC-06 22 41936730 41936730 G A POLR3H Missense_Mutation p.P61S 0.56 deleterious(0.02) probably_damaging(0.994) TCGA-FR-A8YC-06 22 42084872 42084872 G A NHP2L1 5'UTR 0.57 TCGA-FR-A8YC-06 22 42280854 42280854 C T SREBF2 Missense_Mutation p.P683S 0.63 tolerated(0.27) benign(0.008) TCGA-FR-A8YC-06 22 43936082 43936082 C T EFCAB6 Silent p.S1268S 0.59 TCGA-FR-A8YC-06 22 43972309 43972309 T G EFCAB6 Missense_Mutation p.Q1096H 0.28 deleterious(0.02) probably_damaging(0.968) TCGA-FR-A8YC-06 22 44681481 44681481 C T KIAA1644 Missense_Mutation p.M142I 0.24 tolerated(0.07) benign(0.015) TCGA-FR-A8YC-06 22 45110489 45110489 C T PRR5 Silent p.I74I 0.20 TCGA-FR-A8YC-06 22 45779459 45779459 G A SMC1B Missense_Mutation p.S649F 0.46 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 22 45929004 45929004 C T FBLN1 Silent p.F202F 0.25 TCGA-FR-A8YC-06 22 50705058 50705058 G A MAPK11 Intron 0.31 TCGA-FR-A8YC-06 22 50943272 50943272 C T LMF2 Missense_Mutation p.E466K 0.35 deleterious(0.03) probably_damaging(0.938) TCGA-FR-A8YC-06 22 50957725 50957725 C T NCAPH2 Silent p.P279P 0.58 TCGA-FR-A8YC-06 22 50962178 50962178 G A SCO2 Silent p.I221I 0.57 TCGA-FR-A8YC-06 2 100035396 100035396 G A REV1 Silent p.L615L 0.18 TCGA-FR-A8YC-06 2 100917122 100917122 T A LONRF2 Missense_Mutation p.D350V 0.44 tolerated(0.15) benign(0.023) TCGA-FR-A8YC-06 2 103274245 103274245 G A SLC9A2 Nonsense_Mutation p.W171* 0.29 TCGA-FR-A8YC-06 2 107007410 107007410 C T PLGLA RNA 0.30 TCGA-FR-A8YC-06 2 107042482 107042482 G A RGPD3 Missense_Mutation p.L890F 0.10 deleterious(0) possibly_damaging(0.903) TCGA-FR-A8YC-06 2 107459944 107459944 G A ST6GAL2 Missense_Mutation p.P164S 0.31 benign(0.007) TCGA-FR-A8YC-06 2 108477287 108477287 G A RGPD4 Silent p.K608K 0.17 TCGA-FR-A8YC-06 2 108487160 108487160 G A RGPD4 Splice_Site p.X901_splice 0.18 TCGA-FR-A8YC-06 2 108609575 108609575 C T SLC5A7 Missense_Mutation p.S147F 0.29 deleterious(0.01) benign(0.076) TCGA-FR-A8YC-06 2 108626830 108626830 C T SLC5A7 Missense_Mutation p.P419L 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 113089205 113089205 C T ZC3H6 Missense_Mutation p.P904S 0.58 tolerated(0.09) probably_damaging(0.998) TCGA-FR-A8YC-06 2 113325565 113325565 C T POLR1B Missense_Mutation p.P590S 0.51 deleterious(0.03) possibly_damaging(0.512) TCGA-FR-A8YC-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.43 tolerated(0.39) benign(0.015) TCGA-FR-A8YC-06 2 113783691 113783691 C T IL36B Missense_Mutation p.G127E 0.35 tolerated_low_confidence(1) benign(0) TCGA-FR-A8YC-06 2 113832263 113832263 C T IL1F10 Intron 0.21 TCGA-FR-A8YC-06 2 116548862 116548862 G A DPP10 Splice_Site p.X548_splice 0.25 TCGA-FR-A8YC-06 2 11716476 11716476 C T GREB1 Intron 0.22 TCGA-FR-A8YC-06 2 11733145 11733145 C T GREB1 Missense_Mutation p.S530F 0.44 deleterious(0) possibly_damaging(0.882) TCGA-FR-A8YC-06 2 11752728 11752728 C T GREB1 Silent p.S1038S 0.55 TCGA-FR-A8YC-06 2 121106913 121106913 C T INHBB Silent p.F229F 0.28 TCGA-FR-A8YC-06 2 121106914 121106914 C T INHBB Missense_Mutation p.P230S 0.28 tolerated(0.13) benign(0.133) TCGA-FR-A8YC-06 2 122007212 122007212 C T TFCP2L1 Missense_Mutation p.E76K 0.48 deleterious(0) benign(0.334) TCGA-FR-A8YC-06 2 1251211 1251211 C T SNTG2 Missense_Mutation p.P334L 0.33 deleterious(0) possibly_damaging(0.721) TCGA-FR-A8YC-06 2 125204451 125204451 G A CNTNAP5 Silent p.V285V 0.29 TCGA-FR-A8YC-06 2 128339997 128339997 G A MYO7B Missense_Mutation p.G440D 0.29 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 128346007 128346007 C T MYO7B Silent p.I577I 0.29 TCGA-FR-A8YC-06 2 128351135 128351135 C T MYO7B Silent p.L720L 0.25 TCGA-FR-A8YC-06 2 12858640 12858640 T A TRIB2 Silent p.P69P 0.25 TCGA-FR-A8YC-06 2 130831701 130831701 A T POTEF 3'UTR 0.36 TCGA-FR-A8YC-06 2 131520213 131520213 C T AMER3 Missense_Mutation p.P190S 0.61 tolerated(0.15) benign(0.338) TCGA-FR-A8YC-06 2 131520657 131520657 G A AMER3 Missense_Mutation p.D338N 0.46 deleterious(0.04) possibly_damaging(0.787) TCGA-FR-A8YC-06 2 131688563 131688563 C A ARHGEF4 Silent p.P11P 0.21 TCGA-FR-A8YC-06 2 132240457 132240457 G A TUBA3D 3'UTR 0.27 TCGA-FR-A8YC-06 2 133489468 133489468 G A NCKAP5 Missense_Mutation p.S1762F 0.54 deleterious(0.02) probably_damaging(0.962) TCGA-FR-A8YC-06 2 133542502 133542502 A G NCKAP5 Missense_Mutation p.C628R 0.28 tolerated(0.3) benign(0.001) TCGA-FR-A8YC-06 2 135621042 135621042 G A ACMSD Silent p.R109R 0.34 TCGA-FR-A8YC-06 2 135712241 135712241 C T CCNT2 3'UTR 0.34 TCGA-FR-A8YC-06 2 135740757 135740757 C T MAP3K19 Intron 0.53 TCGA-FR-A8YC-06 2 135745518 135745518 C T MAP3K19 Nonsense_Mutation p.W308* 0.32 TCGA-FR-A8YC-06 2 136107654 136107654 G A ZRANB3 Missense_Mutation p.S164F 0.28 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 136481741 136481741 C T R3HDM1 Missense_Mutation p.P1060L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 136564919 136564919 G A LCT Silent p.L1318L 0.47 TCGA-FR-A8YC-06 2 136570035 136570035 C T LCT Silent p.R733R 0.28 TCGA-FR-A8YC-06 2 136575496 136575496 C T LCT Silent p.R374R 0.61 TCGA-FR-A8YC-06 2 136575573 136575573 C T LCT Missense_Mutation p.E349K 0.57 tolerated(0.7) benign(0.001) TCGA-FR-A8YC-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.59 deleterious(0.02) possibly_damaging(0.486) TCGA-FR-A8YC-06 2 137872718 137872718 G A THSD7B Nonsense_Mutation p.W408* 0.59 TCGA-FR-A8YC-06 2 137917850 137917850 C T THSD7B Silent p.I479I 0.53 TCGA-FR-A8YC-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.42 deleterious(0) unknown(0) TCGA-FR-A8YC-06 2 139428949 139428949 C T NXPH2 Missense_Mutation p.G113E 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 139428950 139428950 C T NXPH2 Missense_Mutation p.G113R 0.21 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 139429218 139429218 C T NXPH2 Silent p.K23K 0.20 TCGA-FR-A8YC-06 2 141079612 141079612 A T LRP1B Missense_Mutation p.L4187Q 0.25 possibly_damaging(0.766) TCGA-FR-A8YC-06 2 141108467 141108467 G A LRP1B Nonsense_Mutation p.Q3931* 0.40 TCGA-FR-A8YC-06 2 141116507 141116507 G A LRP1B Missense_Mutation p.L3714F 0.26 benign(0.004) TCGA-FR-A8YC-06 2 141571259 141571259 C T LRP1B Missense_Mutation p.E1776K 0.42 benign(0.292) TCGA-FR-A8YC-06 2 141609234 141609234 C T LRP1B Silent p.K1566K 0.53 TCGA-FR-A8YC-06 2 143799797 143799797 C T KYNU 3'UTR 0.56 TCGA-FR-A8YC-06 2 152359371 152359371 C T NEB Missense_Mutation p.G7955E 0.53 probably_damaging(0.973) TCGA-FR-A8YC-06 2 152474839 152474839 C T NEB Missense_Mutation p.D3676N 0.54 probably_damaging(1) TCGA-FR-A8YC-06 2 152487778 152487778 C T NEB Missense_Mutation p.R3166K 0.28 benign(0.008) TCGA-FR-A8YC-06 2 152522869 152522869 C T NEB Missense_Mutation p.G1589E 0.28 probably_damaging(1) TCGA-FR-A8YC-06 2 152534111 152534111 G A NEB Nonsense_Mutation p.Q1248* 0.35 TCGA-FR-A8YC-06 2 152536302 152536302 C T NEB Missense_Mutation p.G1063E 0.23 probably_damaging(0.999) TCGA-FR-A8YC-06 2 153504529 153504529 A G FMNL2 3'UTR 0.38 TCGA-FR-A8YC-06 2 15417008 15417008 G A NBAS Nonsense_Mutation p.R1786* 0.48 TCGA-FR-A8YC-06 2 154801004 154801004 G A GALNT13 5'UTR 0.17 TCGA-FR-A8YC-06 2 155099419 155099419 G A GALNT13 Splice_Site p.X229_splice 0.35 TCGA-FR-A8YC-06 2 158287438 158287438 C T CYTIP Missense_Mutation p.E106K 0.46 deleterious(0) possibly_damaging(0.741) TCGA-FR-A8YC-06 2 158622464 158622464 C T ACVR1 Silent p.K345K 0.36 TCGA-FR-A8YC-06 2 158980380 158980380 G A UPP2 Missense_Mutation p.A319T 0.29 deleterious(0.02) probably_damaging(0.925) TCGA-FR-A8YC-06 2 160104946 160104946 T C WDSUB1 Missense_Mutation p.I404V 0.34 tolerated(0.67) benign(0.036) TCGA-FR-A8YC-06 2 160706874 160706874 T C LY75-CD302 Silent p.Q996Q 0.41 TCGA-FR-A8YC-06 2 160901430 160901430 G A PLA2R1 Silent p.R116R 0.34 TCGA-FR-A8YC-06 2 161025734 161025734 G A ITGB6 Missense_Mutation p.H336Y 0.42 tolerated(0.82) benign(0.005) TCGA-FR-A8YC-06 2 162696403 162696403 G A SLC4A10 Missense_Mutation p.E128K 0.33 deleterious(0.01) benign(0.046) TCGA-FR-A8YC-06 2 162696433 162696433 G A SLC4A10 Missense_Mutation p.A138T 0.36 deleterious(0) possibly_damaging(0.464) TCGA-FR-A8YC-06 2 163027549 163027549 C T FAP Silent p.T741T 0.53 TCGA-FR-A8YC-06 2 163074537 163074537 C T FAP Missense_Mutation p.D241N 0.12 tolerated(0.12) benign(0.386) TCGA-FR-A8YC-06 2 165952096 165952096 G A SCN3A Silent p.I1452I 0.28 TCGA-FR-A8YC-06 2 166172048 166172048 C T SCN2A Missense_Mutation p.S484L 0.46 tolerated(0.12) benign(0.003) TCGA-FR-A8YC-06 2 166201347 166201347 G A SCN2A Missense_Mutation p.D949N 0.23 deleterious(0) possibly_damaging(0.782) TCGA-FR-A8YC-06 2 166245827 166245827 C T SCN2A Silent p.V1837V 0.36 TCGA-FR-A8YC-06 2 166535444 166535444 C T CSRNP3 Silent p.I313I 0.28 TCGA-FR-A8YC-06 2 166731293 166731293 T C TTC21B Missense_Mutation p.D1308G 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A8YC-06 2 166848128 166848128 C T SCN1A Missense_Mutation p.R1886Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 2 166866266 166866266 C T SCN1A Missense_Mutation p.R1322K 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 16745268 16745268 G A FAM49A Missense_Mutation p.S96F 0.18 deleterious(0) possibly_damaging(0.542) TCGA-FR-A8YC-06 2 168101368 168101368 G A XIRP2 Missense_Mutation p.E1156K 0.43 probably_damaging(0.947) TCGA-FR-A8YC-06 2 168101750 168101750 C T XIRP2 Missense_Mutation p.S1283F 0.27 probably_damaging(1) TCGA-FR-A8YC-06 2 168103766 168103766 G A XIRP2 Missense_Mutation p.G1955E 0.13 benign(0.045) TCGA-FR-A8YC-06 2 168107021 168107021 G A XIRP2 Missense_Mutation p.G3040E 0.29 benign(0.082) TCGA-FR-A8YC-06 2 1691428 1691428 T A PXDN Missense_Mutation p.K131M 0.27 deleterious(0) probably_damaging(0.918) TCGA-FR-A8YC-06 2 169626076 169626076 A G CERS6 Silent p.E361E 0.17 TCGA-FR-A8YC-06 2 169792924 169792924 C T ABCB11 Missense_Mutation p.G877E 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 170013914 170013914 C T LRP2 Missense_Mutation p.E3996K 0.58 benign(0) TCGA-FR-A8YC-06 2 170019101 170019101 G A LRP2 Missense_Mutation p.P3923L 0.48 possibly_damaging(0.631) TCGA-FR-A8YC-06 2 170493014 170493014 C T PPIG Missense_Mutation p.P416S 0.40 tolerated_low_confidence(0.09) unknown(0) TCGA-FR-A8YC-06 2 170681199 170681199 A G METTL5 5'UTR 0.45 TCGA-FR-A8YC-06 2 171070949 171070949 T C MYO3B Silent p.L128L 0.25 TCGA-FR-A8YC-06 2 171070987 171070987 C T MYO3B Silent p.A140A 0.13 TCGA-FR-A8YC-06 2 171699095 171699095 G A GAD1 Intron 0.43 TCGA-FR-A8YC-06 2 171704284 171704284 C T GAD1 Silent p.N367N 0.32 TCGA-FR-A8YC-06 2 171902844 171902844 C A TLK1 Nonsense_Mutation p.E337* 0.22 TCGA-FR-A8YC-06 2 172841175 172841175 C T HAT1 Silent p.S301S 0.48 TCGA-FR-A8YC-06 2 174125805 174125805 G A MLTK Missense_Mutation p.M497I 0.24 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YC-06 2 174820932 174820932 C T SP3 Missense_Mutation p.G103E 0.34 deleterious(0.05) benign(0.015) TCGA-FR-A8YC-06 2 175613487 175613487 C T CHRNA1 Missense_Mutation p.E380K 0.29 tolerated(0.41) benign(0.392) TCGA-FR-A8YC-06 2 176835512 176835512 T G KIAA1715 Missense_Mutation p.K113Q 0.42 deleterious(0.01) possibly_damaging(0.905) TCGA-FR-A8YC-06 2 178482371 178482371 G A TTC30A Silent p.F353F 0.30 TCGA-FR-A8YC-06 2 179193015 179193015 G A OSBPL6 Silent p.L76L 0.43 TCGA-FR-A8YC-06 2 179396071 179396071 C T TTN Missense_Mutation p.E35091K 0.52 TCGA-FR-A8YC-06 2 179397958 179397958 C T TTN Missense_Mutation p.E34462K 0.33 TCGA-FR-A8YC-06 2 179398147 179398147 C T TTN Missense_Mutation p.D34399N 0.43 TCGA-FR-A8YC-06 2 179400526 179400526 G A TTN Missense_Mutation p.H33606Y 0.30 TCGA-FR-A8YC-06 2 179407066 179407066 G A TTN Missense_Mutation p.R32473C 0.45 TCGA-FR-A8YC-06 2 179412482 179412482 C T TTN Missense_Mutation p.E31291K 0.45 TCGA-FR-A8YC-06 2 179412967 179412967 G A TTN Missense_Mutation p.S31129F 0.29 TCGA-FR-A8YC-06 2 179416781 179416781 C T TTN Silent p.T30282T 0.41 TCGA-FR-A8YC-06 2 179417111 179417111 C T TTN Silent p.L30172L 0.29 TCGA-FR-A8YC-06 2 179417454 179417454 C T TTN Missense_Mutation p.G30058D 0.44 TCGA-FR-A8YC-06 2 179427302 179427302 C T TTN Missense_Mutation p.E27853K 0.48 TCGA-FR-A8YC-06 2 179427692 179427692 C T TTN Missense_Mutation p.E27723K 0.56 TCGA-FR-A8YC-06 2 179429703 179429703 C T TTN Silent p.R27052R 0.26 TCGA-FR-A8YC-06 2 179432291 179432291 G A TTN Missense_Mutation p.L26190F 0.53 TCGA-FR-A8YC-06 2 179433986 179433986 G A TTN Missense_Mutation p.P25625S 0.35 TCGA-FR-A8YC-06 2 179436815 179436815 C T TTN Missense_Mutation p.G24682S 0.30 TCGA-FR-A8YC-06 2 179441448 179441448 G A TTN Missense_Mutation p.H23175Y 0.47 TCGA-FR-A8YC-06 2 179442799 179442799 C T TTN Missense_Mutation p.E22815K 0.27 TCGA-FR-A8YC-06 2 179445303 179445303 C T TTN Missense_Mutation p.R22268K 0.52 TCGA-FR-A8YC-06 2 179447679 179447679 G A TTN Missense_Mutation p.L21951F 0.54 TCGA-FR-A8YC-06 2 179449180 179449180 C T TTN Missense_Mutation p.E21700K 0.29 TCGA-FR-A8YC-06 2 179452311 179452311 C T TTN Missense_Mutation p.G21242E 0.33 TCGA-FR-A8YC-06 2 179452790 179452790 C T TTN Missense_Mutation p.G21115D 0.17 TCGA-FR-A8YC-06 2 179456033 179456033 T C TTN Missense_Mutation p.N20140S 0.29 TCGA-FR-A8YC-06 2 179456418 179456418 C T TTN Missense_Mutation p.G20043E 0.26 TCGA-FR-A8YC-06 2 179457960 179457960 C T TTN Missense_Mutation p.E19659K 0.26 TCGA-FR-A8YC-06 2 179467274 179467274 C T TTN Silent p.T18285T 0.80 TCGA-FR-A8YC-06 2 179468790 179468790 C T TTN Silent p.E18208E 0.24 TCGA-FR-A8YC-06 2 179476581 179476581 C T TTN Missense_Mutation p.G16819R 0.13 TCGA-FR-A8YC-06 2 179478924 179478924 C T TTN Silent p.K16400K 0.47 TCGA-FR-A8YC-06 2 179481673 179481673 C T TTN Silent p.T15981T 0.24 TCGA-FR-A8YC-06 2 179484609 179484609 G A TTN Missense_Mutation p.P15479S 0.50 TCGA-FR-A8YC-06 2 179486322 179486322 C T TTN Missense_Mutation p.E15077K 0.51 TCGA-FR-A8YC-06 2 179486421 179486421 C T TTN Missense_Mutation p.E15044K 0.32 TCGA-FR-A8YC-06 2 179504437 179504437 C T TTN Missense_Mutation p.G13622E 0.31 TCGA-FR-A8YC-06 2 179514905 179514905 A G TTN Missense_Mutation p.V13268A 0.42 TCGA-FR-A8YC-06 2 179516638 179516638 C T TTN Missense_Mutation p.E13118K 0.29 TCGA-FR-A8YC-06 2 179526504 179526504 C T TTN Missense_Mutation p.E12423K 0.27 TCGA-FR-A8YC-06 2 179542381 179542381 C T TTN Missense_Mutation p.E11420K 0.36 TCGA-FR-A8YC-06 2 179544375 179544375 C T TTN Silent p.E11205E 0.27 TCGA-FR-A8YC-06 2 179552847 179552847 C T TTN Missense_Mutation p.E10768K 0.44 TCGA-FR-A8YC-06 2 179572409 179572409 C T TTN Missense_Mutation p.E9629K 0.57 TCGA-FR-A8YC-06 2 179579173 179579173 G A TTN Silent p.I8776I 0.35 TCGA-FR-A8YC-06 2 179584878 179584878 C T TTN Missense_Mutation p.D7831N 0.36 TCGA-FR-A8YC-06 2 179587274 179587274 C T TTN Splice_Site p.X7414_splice 0.35 TCGA-FR-A8YC-06 2 179587876 179587876 G A TTN Silent p.I7286I 0.38 TCGA-FR-A8YC-06 2 179588277 179588277 T A TTN Missense_Mutation p.N7184Y 0.53 TCGA-FR-A8YC-06 2 179590750 179590750 G A TTN Missense_Mutation p.P6767S 0.33 TCGA-FR-A8YC-06 2 179594288 179594288 G A TTN Missense_Mutation p.P6199S 0.52 TCGA-FR-A8YC-06 2 179596423 179596423 T C TTN Missense_Mutation p.R5727G 0.48 TCGA-FR-A8YC-06 2 179596425 179596425 A T TTN Nonsense_Mutation p.L5726* 0.49 TCGA-FR-A8YC-06 2 179596544 179596544 G A TTN Silent p.F5686F 0.54 TCGA-FR-A8YC-06 2 179599144 179599144 G A TTN Missense_Mutation p.S5136L 0.23 TCGA-FR-A8YC-06 2 179604974 179604974 C T TTN Missense_Mutation p.R4329K 0.36 TCGA-FR-A8YC-06 2 179610826 179610826 C T TTN Intron 0.33 TCGA-FR-A8YC-06 2 179612959 179612959 G A TTN Intron 0.32 TCGA-FR-A8YC-06 2 179614963 179614963 T A TTN Intron 0.28 TCGA-FR-A8YC-06 2 179634491 179634491 G A TTN Silent p.I2939I 0.47 TCGA-FR-A8YC-06 2 179634499 179634499 G A TTN Nonsense_Mutation p.Q2937* 0.48 TCGA-FR-A8YC-06 2 179639896 179639896 T C TTN Missense_Mutation p.Q2181R 0.28 TCGA-FR-A8YC-06 2 179640359 179640359 G A TTN Missense_Mutation p.P2078S 0.38 TCGA-FR-A8YC-06 2 179642664 179642664 C T TTN Missense_Mutation p.R1416H 0.30 TCGA-FR-A8YC-06 2 179644837 179644837 G T TTN Missense_Mutation p.P1207T 0.39 TCGA-FR-A8YC-06 2 182339944 182339944 C T ITGA4 Missense_Mutation p.T162I 0.39 tolerated(0.09) benign(0.003) TCGA-FR-A8YC-06 2 182360646 182360646 G A ITGA4 Missense_Mutation p.E508K 0.25 tolerated(0.18) benign(0.009) TCGA-FR-A8YC-06 2 183104852 183104852 C T PDE1A Missense_Mutation p.G128E 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 185801255 185801255 G A ZNF804A Missense_Mutation p.E378K 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-FR-A8YC-06 2 185801873 185801873 G A ZNF804A Missense_Mutation p.E584K 0.14 deleterious(0.04) benign(0.027) TCGA-FR-A8YC-06 2 185803517 185803517 C T ZNF804A Missense_Mutation p.L1132F 0.23 deleterious(0.05) benign(0.424) TCGA-FR-A8YC-06 2 185803733 185803733 C T ZNF804A Missense_Mutation p.P1204S 0.40 tolerated(0.1) probably_damaging(0.992) TCGA-FR-A8YC-06 2 185803840 185803840 A T ZNF804A 3'UTR 0.21 TCGA-FR-A8YC-06 2 187627450 187627450 C T FAM171B Missense_Mutation p.S794F 0.36 deleterious(0.01) possibly_damaging(0.89) TCGA-FR-A8YC-06 2 18768804 18768804 C T NT5C1B Missense_Mutation p.E29K 0.56 tolerated_low_confidence(0.08) benign(0.08) TCGA-FR-A8YC-06 2 188211090 188211090 T C CALCRL Missense_Mutation p.K403E 0.39 deleterious(0) benign(0.089) TCGA-FR-A8YC-06 2 189856252 189856252 C T COL3A1 Missense_Mutation p.P298S 0.12 unknown(0) TCGA-FR-A8YC-06 2 189864266 189864266 G A COL3A1 Missense_Mutation p.R731K 0.37 unknown(0) TCGA-FR-A8YC-06 2 1926806 1926806 C T MYT1L Silent p.R245R 0.16 TCGA-FR-A8YC-06 2 1926893 1926893 G A MYT1L Silent p.A216A 0.63 TCGA-FR-A8YC-06 2 192700979 192700979 T A SDPR Missense_Mutation p.E316D 0.32 tolerated(0.2) benign(0.004) TCGA-FR-A8YC-06 2 192701020 192701020 G A SDPR Nonsense_Mutation p.R303* 0.50 TCGA-FR-A8YC-06 2 192701021 192701021 G A SDPR Silent p.V302V 0.48 TCGA-FR-A8YC-06 2 196642576 196642576 G A DNAH7 Missense_Mutation p.S3671L 0.32 tolerated(0.16) benign(0.001) TCGA-FR-A8YC-06 2 196673459 196673459 G A DNAH7 Missense_Mutation p.R3344C 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-FR-A8YC-06 2 196673509 196673509 G A DNAH7 Missense_Mutation p.S3327F 0.50 deleterious(0) possibly_damaging(0.896) TCGA-FR-A8YC-06 2 196746674 196746674 C T DNAH7 Missense_Mutation p.A1936T 0.31 tolerated(0.4) benign(0.005) TCGA-FR-A8YC-06 2 196801466 196801466 C T DNAH7 Silent p.L1043L 0.27 TCGA-FR-A8YC-06 2 197183609 197183609 G A HECW2 Missense_Mutation p.P669S 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-FR-A8YC-06 2 197184172 197184172 G A HECW2 Missense_Mutation p.S481F 0.50 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FR-A8YC-06 2 197184583 197184583 A G HECW2 Missense_Mutation p.V344A 0.46 tolerated_low_confidence(0.08) benign(0.057) TCGA-FR-A8YC-06 2 197729750 197729750 G A PGAP1 Missense_Mutation p.L608F 0.25 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 2 197744807 197744807 C T PGAP1 Missense_Mutation p.G448E 0.23 tolerated(0.06) possibly_damaging(0.764) TCGA-FR-A8YC-06 2 198270104 198270104 G A SF3B1 Silent p.F444F 0.35 TCGA-FR-A8YC-06 2 198285239 198285239 G A SF3B1 Missense_Mutation p.P110S 0.12 tolerated(0.42) benign(0.001) TCGA-FR-A8YC-06 2 201436609 201436609 C T SGOL2 Missense_Mutation p.H514Y 0.15 tolerated(1) benign(0.324) TCGA-FR-A8YC-06 2 201470269 201470269 G A AOX1 Silent p.V275V 0.50 TCGA-FR-A8YC-06 2 202050811 202050811 G A CASP10 Missense_Mutation p.R104Q 0.24 tolerated(0.37) benign(0.004) TCGA-FR-A8YC-06 2 203623985 203623985 T C FAM117B Missense_Mutation p.Y454H 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-FR-A8YC-06 2 204354615 204354615 T C RAPH1 Missense_Mutation p.R142G 0.58 benign(0.4) TCGA-FR-A8YC-06 2 207018408 207018408 T - NDUFS1 Splice_Site p.X13_splice 0.30 TCGA-FR-A8YC-06 2 207170029 207170029 G A ZDBF2 Silent p.R259R 0.25 TCGA-FR-A8YC-06 2 207426981 207426981 C T ADAM23 Missense_Mutation p.L437F 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 207583057 207583057 G A DYTN 5'UTR 0.38 TCGA-FR-A8YC-06 2 209028100 209028100 C T CRYGA Missense_Mutation p.R27Q 0.26 tolerated(1) benign(0) TCGA-FR-A8YC-06 2 211319901 211319901 G A LANCL1 Missense_Mutation p.P113S 0.51 deleterious(0) probably_damaging(0.984) TCGA-FR-A8YC-06 2 21225185 21225185 G A APOB Missense_Mutation p.A4370V 0.53 benign(0.014) TCGA-FR-A8YC-06 2 21231126 21231126 C T APOB Missense_Mutation p.G2872R 0.60 benign(0.235) TCGA-FR-A8YC-06 2 21233206 21233206 C T APOB Missense_Mutation p.M2178I 0.50 benign(0.001) TCGA-FR-A8YC-06 2 21252883 21252883 G A APOB Missense_Mutation p.H453Y 0.24 benign(0.003) TCGA-FR-A8YC-06 2 212568853 212568853 G A ERBB4 Missense_Mutation p.T422I 0.42 tolerated(0.9) benign(0.05) TCGA-FR-A8YC-06 2 215809746 215809746 G A ABCA12 Missense_Mutation p.S2441F 0.32 deleterious(0) possibly_damaging(0.841) TCGA-FR-A8YC-06 2 217234917 217234917 C T MARCH4 Missense_Mutation p.G23R 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-FR-A8YC-06 2 217528759 217528759 C T IGFBP2 Missense_Mutation p.P304S 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 219293061 219293061 G A VIL1 Splice_Site p.X189_splice 0.10 TCGA-FR-A8YC-06 2 219507142 219507142 C T ZNF142 Missense_Mutation p.R1366Q 0.37 deleterious(0.05) benign(0.238) TCGA-FR-A8YC-06 2 219692064 219692064 T C PRKAG3 Missense_Mutation p.N303S 0.54 tolerated(0.15) possibly_damaging(0.905) TCGA-FR-A8YC-06 2 219878660 219878660 G A CCDC108 Missense_Mutation p.L1237F 0.38 deleterious(0) probably_damaging(0.959) TCGA-FR-A8YC-06 2 220098107 220098107 C T ANKZF1 Silent p.H257H 0.36 TCGA-FR-A8YC-06 2 220166887 220166887 C T PTPRN Silent p.E322E 0.61 TCGA-FR-A8YC-06 2 220347945 220347945 C T SPEG Silent p.S1920S 0.57 TCGA-FR-A8YC-06 2 220439987 220439987 C T INHA Silent p.I280I 0.29 TCGA-FR-A8YC-06 2 222291320 222291320 C T EPHA4 Missense_Mutation p.D904N 0.32 tolerated(0.06) benign(0) TCGA-FR-A8YC-06 2 227942750 227942750 C T COL4A4 Missense_Mutation p.G616E 0.26 probably_damaging(0.993) TCGA-FR-A8YC-06 2 228552245 228552245 G A SLC19A3 Silent p.F453F 0.35 TCGA-FR-A8YC-06 2 228758633 228758633 G A DAW1 Missense_Mutation p.G147D 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-FR-A8YC-06 2 228882404 228882404 C T SPHKAP Missense_Mutation p.D1056N 0.24 deleterious(0) probably_damaging(0.963) TCGA-FR-A8YC-06 2 228883477 228883477 G A SPHKAP Missense_Mutation p.S698L 0.34 deleterious(0.05) benign(0.062) TCGA-FR-A8YC-06 2 229890423 229890423 C T PID1 Missense_Mutation p.M224I 0.33 deleterious(0.03) benign(0.173) TCGA-FR-A8YC-06 2 229890500 229890500 C T PID1 Missense_Mutation p.E199K 0.56 tolerated(0.17) possibly_damaging(0.475) TCGA-FR-A8YC-06 2 230840999 230840999 C T FBXO36 Nonsense_Mutation p.R47* 0.39 TCGA-FR-A8YC-06 2 231108466 231108466 G A SP140 Missense_Mutation p.E171K 0.11 tolerated(0.2) benign(0.001) TCGA-FR-A8YC-06 2 231264985 231264985 C T SP140L Intron 0.41 TCGA-FR-A8YC-06 2 231775638 231775638 C T GPR55 Missense_Mutation p.G14S 0.43 tolerated(0.48) benign(0.002) TCGA-FR-A8YC-06 2 231947683 231947683 C T PSMD1 Silent p.N500N 0.31 TCGA-FR-A8YC-06 2 232127080 232127080 A T ARMC9 Missense_Mutation p.N363I 0.34 deleterious(0) probably_damaging(0.977) TCGA-FR-A8YC-06 2 232374044 232374044 G A LINC00471 RNA 0.24 TCGA-FR-A8YC-06 2 232602829 232602829 G A PDE6D Silent p.I53I 0.35 TCGA-FR-A8YC-06 2 232894698 232894698 C T DIS3L2 Nonsense_Mutation p.R92* 0.46 TCGA-FR-A8YC-06 2 234235768 234235768 C T SAG Missense_Mutation p.S146F 0.41 deleterious(0.04) possibly_damaging(0.845) TCGA-FR-A8YC-06 2 234580658 234580658 G A UGT1A9 Silent p.G26G 0.26 TCGA-FR-A8YC-06 2 234638207 234638207 C T UGT1A3 Silent p.S145S 0.35 TCGA-FR-A8YC-06 2 237240050 237240050 C T IQCA1 Silent p.A775A 0.41 TCGA-FR-A8YC-06 2 237272552 237272552 C T IQCA1 Silent p.G580G 0.30 TCGA-FR-A8YC-06 2 238475780 238475780 C T PRLH Missense_Mutation p.P76S 0.31 tolerated(0.3) benign(0.31) TCGA-FR-A8YC-06 2 238484074 238484074 G A RAB17 Missense_Mutation p.S162L 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 242075321 242075321 G A PASK Missense_Mutation p.P424L 0.66 tolerated(0.22) benign(0.003) TCGA-FR-A8YC-06 2 242075322 242075322 G A PASK Missense_Mutation p.P424S 0.63 tolerated(0.33) benign(0.009) TCGA-FR-A8YC-06 2 242128149 242128149 C T ANO7 Silent p.T41T 0.32 TCGA-FR-A8YC-06 2 242407630 242407630 T C FARP2 Silent p.L657L 0.38 TCGA-FR-A8YC-06 2 26416632 26416632 C T HADHA Missense_Mutation p.D567N 0.61 tolerated(0.12) benign(0.008) TCGA-FR-A8YC-06 2 26534497 26534497 C T GPR113 Missense_Mutation p.G700E 0.58 tolerated(0.06) possibly_damaging(0.649) TCGA-FR-A8YC-06 2 26703877 26703877 C T OTOF Missense_Mutation p.G527D 0.17 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 26950534 26950534 G A KCNK3 Splice_Site p.X95_splice 0.57 TCGA-FR-A8YC-06 2 26951183 26951183 C T KCNK3 Missense_Mutation p.S311L 0.38 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 2 27805101 27805101 C T C2orf16 Missense_Mutation p.P1888S 0.58 tolerated(0.25) unknown(0) TCGA-FR-A8YC-06 2 28796149 28796149 G A PLB1 Silent p.Q470Q 0.26 TCGA-FR-A8YC-06 2 28796150 28796150 G A PLB1 Missense_Mutation p.A471T 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 29293578 29293578 G A C2orf71 Missense_Mutation p.L1184F 0.56 deleterious(0.01) benign(0.181) TCGA-FR-A8YC-06 2 29295609 29295609 C T C2orf71 Missense_Mutation p.E507K 0.55 tolerated(0.71) benign(0.015) TCGA-FR-A8YC-06 2 30966332 30966332 C T CAPN13 Silent p.G454G 0.63 TCGA-FR-A8YC-06 2 30966333 30966333 C T CAPN13 Missense_Mutation p.G454E 0.63 deleterious(0.04) probably_damaging(0.986) TCGA-FR-A8YC-06 2 30998827 30998827 G A CAPN13 Missense_Mutation p.S119L 0.55 deleterious(0.01) possibly_damaging(0.904) TCGA-FR-A8YC-06 2 31010211 31010211 C T CAPN13 5'UTR 0.20 TCGA-FR-A8YC-06 2 31590863 31590863 T A XDH Nonsense_Mutation p.K721* 0.29 TCGA-FR-A8YC-06 2 33003003 33003003 G A TTC27 Missense_Mutation p.G579S 0.24 tolerated(0.07) possibly_damaging(0.561) TCGA-FR-A8YC-06 2 33246027 33246027 T A LTBP1 Missense_Mutation p.L206H 0.53 deleterious(0) benign(0.073) TCGA-FR-A8YC-06 2 3691678 3691678 C T COLEC11 Silent p.F276F 0.52 TCGA-FR-A8YC-06 2 37076660 37076660 T C STRN Missense_Mutation p.H761R 0.34 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 2 39053735 39053735 G A DHX57 Silent p.S912S 0.33 TCGA-FR-A8YC-06 2 39234309 39234309 C T SOS1 Missense_Mutation p.E846K 0.61 deleterious(0.01) probably_damaging(0.925) TCGA-FR-A8YC-06 2 40366630 40366630 C T SLC8A1 Missense_Mutation p.G819E 0.53 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 40366692 40366692 C T SLC8A1 Nonsense_Mutation p.W798* 0.29 TCGA-FR-A8YC-06 2 40656159 40656159 T A SLC8A1 Missense_Mutation p.N421I 0.56 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 2 40656693 40656693 G A SLC8A1 Missense_Mutation p.P243L 0.55 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 43458144 43458144 C T THADA Nonsense_Mutation p.W1935* 0.68 TCGA-FR-A8YC-06 2 43801900 43801900 G A THADA Missense_Mutation p.P435L 0.39 deleterious(0.03) benign(0.019) TCGA-FR-A8YC-06 2 45233474 45233474 G A SIX2 Silent p.P237P 0.25 TCGA-FR-A8YC-06 2 48010259 48010259 C T MSH6 5'UTR 0.69 TCGA-FR-A8YC-06 2 48914741 48914741 C T LHCGR 3'UTR 0.40 TCGA-FR-A8YC-06 2 50758449 50758449 G C NRXN1 Missense_Mutation p.L795V 0.64 deleterious(0.02) possibly_damaging(0.836) TCGA-FR-A8YC-06 2 50765685 50765685 C T NRXN1 Missense_Mutation p.G657R 0.32 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 2 51254950 51254950 G A NRXN1 Silent p.F154F 0.26 TCGA-FR-A8YC-06 2 55529049 55529049 G A CCDC88A Missense_Mutation p.S1543F 0.22 deleterious(0) probably_damaging(0.921) TCGA-FR-A8YC-06 2 55921011 55921011 G A PNPT1 5'UTR 0.25 TCGA-FR-A8YC-06 2 56216194 56216194 C T MIR216A RNA 0.20 TCGA-FR-A8YC-06 2 56420434 56420434 G A CCDC85A Missense_Mutation p.G367R 0.39 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-FR-A8YC-06 2 60687447 60687447 C T BCL11A 3'UTR 0.39 TCGA-FR-A8YC-06 2 61522395 61522395 G A USP34 Missense_Mutation p.L1429F 0.29 deleterious(0.02) possibly_damaging(0.614) TCGA-FR-A8YC-06 2 61561104 61561104 G A USP34 Missense_Mutation p.S916L 0.59 deleterious(0) probably_damaging(0.917) TCGA-FR-A8YC-06 2 63092011 63092011 T C EHBP1 Silent p.P336P 0.28 TCGA-FR-A8YC-06 2 63092013 63092013 C T EHBP1 Missense_Mutation p.P337L 0.30 tolerated(0.1) benign(0.029) TCGA-FR-A8YC-06 2 65541206 65541206 T C SPRED2 Missense_Mutation p.E229G 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-FR-A8YC-06 2 70890760 70890760 C T ADD2 Missense_Mutation p.E660K 0.64 deleterious(0.03) benign(0.129) TCGA-FR-A8YC-06 2 70906009 70906009 C T ADD2 Missense_Mutation p.V404I 0.55 deleterious(0) possibly_damaging(0.817) TCGA-FR-A8YC-06 2 71160344 71160344 C T VAX2 3'UTR 0.13 TCGA-FR-A8YC-06 2 71838440 71838440 G A DYSF Silent p.Q1341Q 0.22 TCGA-FR-A8YC-06 2 73315645 73315645 G A RAB11FIP5 Silent p.S367S 0.53 TCGA-FR-A8YC-06 2 73718576 73718576 G A ALMS1 Missense_Mutation p.D3163N 0.32 probably_damaging(0.983) TCGA-FR-A8YC-06 2 74042634 74042634 A C C2orf78 Missense_Mutation p.Q428H 0.64 tolerated(0.13) benign(0.052) TCGA-FR-A8YC-06 2 74140697 74140697 G A ACTG2 Silent p.L179L 0.28 TCGA-FR-A8YC-06 2 74320715 74320715 C T TET3 Silent p.F928F 0.23 TCGA-FR-A8YC-06 2 74512919 74512919 C T SLC4A5 Missense_Mutation p.E128K 0.43 deleterious(0) possibly_damaging(0.566) TCGA-FR-A8YC-06 2 74689409 74689409 G A MOGS Silent p.L503L 0.61 TCGA-FR-A8YC-06 2 79314691 79314691 G A REG1B Silent p.F16F 0.25 TCGA-FR-A8YC-06 2 80816596 80816596 G A CTNNA2 Missense_Mutation p.M725I 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-FR-A8YC-06 2 86756484 86756484 A G RNF103-CHMP3 Missense_Mutation p.V77A 0.56 tolerated(0.08) benign(0.13) TCGA-FR-A8YC-06 2 89161577 89161577 T C IGKC 5'Flank 1.00 TCGA-FR-A8YC-06 2 89475906 89475906 C T IGKV2-24 Missense_Mutation p.G89D 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-FR-A8YC-06 2 90153740 90153740 G A IGKV3D-15 5'UTR 0.08 TCGA-FR-A8YC-06 2 9563885 9563885 C T CPSF3 5'UTR 0.23 TCGA-FR-A8YC-06 2 95753238 95753238 G A MRPS5 Missense_Mutation p.S386F 0.23 deleterious(0.03) benign(0.168) TCGA-FR-A8YC-06 2 9667948 9667948 G A ADAM17 Missense_Mutation p.P196S 0.18 tolerated(0.13) possibly_damaging(0.77) TCGA-FR-A8YC-06 2 96781355 96781355 G A ADRA2B Silent p.I178I 0.32 TCGA-FR-A8YC-06 2 96906221 96906221 C T STARD7-AS1 RNA 0.24 TCGA-FR-A8YC-06 2 98916581 98916581 G A VWA3B Missense_Mutation p.G1108R 0.27 deleterious(0) probably_damaging(0.949) TCGA-FR-A8YC-06 2 99013487 99013487 G A CNGA3 Silent p.R618R 0.48 TCGA-FR-A8YC-06 3 10442751 10442751 G A ATP2B2 Missense_Mutation p.P223S 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 105377788 105377788 C T CBLB 3'UTR 0.30 TCGA-FR-A8YC-06 3 105412393 105412393 C T CBLB Missense_Mutation p.V667I 0.40 tolerated_low_confidence(0.56) benign(0.001) TCGA-FR-A8YC-06 3 108147563 108147563 C T MYH15 Missense_Mutation p.E1180K 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-FR-A8YC-06 3 108147688 108147688 C T MYH15 Missense_Mutation p.R1138K 0.34 tolerated(0.07) benign(0.039) TCGA-FR-A8YC-06 3 108278810 108278810 G A KIAA1524 Silent p.S631S 0.25 TCGA-FR-A8YC-06 3 108549601 108549601 C T TRAT1 Missense_Mutation p.S31F 0.36 tolerated(0.05) benign(0.226) TCGA-FR-A8YC-06 3 108724101 108724101 G A MORC1 Missense_Mutation p.S610L 0.45 deleterious(0.04) benign(0.01) TCGA-FR-A8YC-06 3 10885941 10885941 G A SLC6A11 Silent p.G222G 0.21 TCGA-FR-A8YC-06 3 109027921 109027921 G A DPPA2 Silent p.I116I 0.36 TCGA-FR-A8YC-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.34 deleterious(0) benign(0.02) TCGA-FR-A8YC-06 3 111659448 111659448 C T PHLDB2 Missense_Mutation p.H785Y 0.52 tolerated(0.07) possibly_damaging(0.885) TCGA-FR-A8YC-06 3 112289450 112289450 C T SLC35A5 Missense_Mutation p.S98F 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-FR-A8YC-06 3 112724672 112724672 A C C3orf17 Missense_Mutation p.F472C 0.50 tolerated(0.18) possibly_damaging(0.698) TCGA-FR-A8YC-06 3 11301387 11301387 C T HRH1 Nonsense_Mutation p.Q222* 0.44 TCGA-FR-A8YC-06 3 113300252 113300252 C T SIDT1 Silent p.V236V 0.41 TCGA-FR-A8YC-06 3 113753924 113753924 C T KIAA1407 Silent p.S222S 0.46 TCGA-FR-A8YC-06 3 113878698 113878698 C T DRD3 Nonsense_Mutation p.W96* 0.42 TCGA-FR-A8YC-06 3 113955837 113955837 G A ZNF80 Missense_Mutation p.L29F 0.48 tolerated(0.14) benign(0.016) TCGA-FR-A8YC-06 3 119367317 119367317 G A POPDC2 Missense_Mutation p.L267F 0.28 tolerated(0.26) benign(0.225) TCGA-FR-A8YC-06 3 119367323 119367323 G A POPDC2 Missense_Mutation p.P265S 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 3 120924770 120924770 G A STXBP5L Missense_Mutation p.G293E 0.38 deleterious(0) possibly_damaging(0.897) TCGA-FR-A8YC-06 3 121238910 121238910 C T POLQ Missense_Mutation p.D426N 0.41 deleterious(0) probably_damaging(0.923) TCGA-FR-A8YC-06 3 121631906 121631906 G A SLC15A2 Missense_Mutation p.G156E 0.49 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.32 tolerated(0.24) benign(0.003) TCGA-FR-A8YC-06 3 122160905 122160905 C T KPNA1 Missense_Mutation p.G326R 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 123348323 123348323 C T MYLK Missense_Mutation p.M1704I 0.36 deleterious(0.01) benign(0.072) TCGA-FR-A8YC-06 3 123359297 123359297 C T MYLK Silent p.T1558T 0.49 TCGA-FR-A8YC-06 3 123813748 123813748 C T KALRN Nonsense_Mutation p.R22* 0.29 TCGA-FR-A8YC-06 3 124165060 124165060 C T KALRN Silent p.T1120T 0.32 TCGA-FR-A8YC-06 3 124449246 124449246 C T UMPS 5'UTR 0.57 TCGA-FR-A8YC-06 3 124646458 124646458 G A MUC13 Silent p.S144S 0.28 TCGA-FR-A8YC-06 3 124909366 124909366 C T SLC12A8 Splice_Site p.X18_splice 0.29 TCGA-FR-A8YC-06 3 125787001 125787001 C T SLC41A3 Missense_Mutation p.G21E 0.45 tolerated(0.35) benign(0.01) TCGA-FR-A8YC-06 3 126268815 126268815 G A C3orf22 Missense_Mutation p.R108C 0.34 tolerated(0.18) benign(0.272) TCGA-FR-A8YC-06 3 127682195 127682195 G T KBTBD12 Silent p.G552G 0.28 TCGA-FR-A8YC-06 3 127702971 127702971 G A KBTBD12 Silent p.L574L 0.43 TCGA-FR-A8YC-06 3 128181534 128181534 G A DNAJB8 Silent p.S185S 0.44 TCGA-FR-A8YC-06 3 128875475 128875475 C T ISY1 Splice_Site p.X63_splice 0.21 TCGA-FR-A8YC-06 3 12949872 12949872 G A IQSEC1 Missense_Mutation p.S925F 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 3 130308020 130308020 G A COL6A6 Silent p.G1404G 0.45 TCGA-FR-A8YC-06 3 131306357 131306357 C T CPNE4 Missense_Mutation p.E251K 0.33 tolerated(0.13) probably_damaging(0.98) TCGA-FR-A8YC-06 3 13360762 13360762 G A NUP210 Missense_Mutation p.A1816V 0.38 tolerated(0.09) benign(0.214) TCGA-FR-A8YC-06 3 133661479 133661479 G A SLCO2A1 Missense_Mutation p.S532F 0.35 deleterious(0) probably_damaging(0.932) TCGA-FR-A8YC-06 3 13407588 13407588 C T NUP210 Missense_Mutation p.R597K 0.47 tolerated(0.38) benign(0.082) TCGA-FR-A8YC-06 3 134920478 134920478 C T EPHB1 Missense_Mutation p.L765F 0.21 deleterious(0) probably_damaging(0.938) TCGA-FR-A8YC-06 3 137781669 137781669 G A DZIP1L Missense_Mutation p.P765S 0.53 tolerated(0.31) benign(0.043) TCGA-FR-A8YC-06 3 137991861 137991861 T C ARMC8 Missense_Mutation p.L497S 0.51 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 3 138763166 138763166 C T PRR23C Silent p.V99V 1.00 TCGA-FR-A8YC-06 3 140167530 140167530 C T CLSTN2 Silent p.S319S 0.41 TCGA-FR-A8YC-06 3 141011219 141011219 T C ACPL2 Silent p.T205T 0.57 TCGA-FR-A8YC-06 3 141235216 141235216 C T RASA2 Nonsense_Mutation p.Q100* 0.27 TCGA-FR-A8YC-06 3 142422804 142422804 C T PLS1 Missense_Mutation p.S489L 0.47 tolerated(0.22) benign(0.02) TCGA-FR-A8YC-06 3 14558648 14558648 G A GRIP2 RNA 0.43 TCGA-FR-A8YC-06 3 147113791 147113791 G A ZIC4 Missense_Mutation p.P229L 0.45 tolerated(0.05) benign(0.002) TCGA-FR-A8YC-06 3 14724407 14724407 C T C3orf20 Missense_Mutation p.P63S 0.28 tolerated(0.27) possibly_damaging(0.713) TCGA-FR-A8YC-06 3 14724408 14724408 C T C3orf20 Missense_Mutation p.P63L 0.26 tolerated(0.08) possibly_damaging(0.814) TCGA-FR-A8YC-06 3 14755583 14755583 C T C3orf20 Silent p.L410L 0.41 TCGA-FR-A8YC-06 3 14922115 14922115 G A FGD5 Missense_Mutation p.E899K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 3 150391821 150391821 C T FAM194A Missense_Mutation p.R422K 0.24 tolerated(0.82) benign(0.009) TCGA-FR-A8YC-06 3 150400058 150400058 C T FAM194A Missense_Mutation p.D277N 0.33 tolerated(0.36) benign(0.05) TCGA-FR-A8YC-06 3 151131071 151131071 G A MED12L Silent p.Q2060Q 0.52 TCGA-FR-A8YC-06 3 151154745 151154745 G A IGSF10 Missense_Mutation p.P2535L 0.31 deleterious(0.01) probably_damaging(0.91) TCGA-FR-A8YC-06 3 151164985 151164985 G A IGSF10 Silent p.I928I 0.27 TCGA-FR-A8YC-06 3 15282276 15282276 C T CAPN7 Missense_Mutation p.S523F 0.33 deleterious(0) possibly_damaging(0.482) TCGA-FR-A8YC-06 3 153905603 153905603 A G ARHGEF26 Silent p.Q539Q 0.36 TCGA-FR-A8YC-06 3 154042100 154042100 A G DHX36 Missense_Mutation p.S36P 0.50 tolerated(0.18) benign(0.307) TCGA-FR-A8YC-06 3 154146656 154146656 G A GPR149 Missense_Mutation p.S250F 0.29 deleterious(0.01) benign(0.049) TCGA-FR-A8YC-06 3 155199832 155199832 G A PLCH1 Missense_Mutation p.S1336F 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.526) TCGA-FR-A8YC-06 3 156746105 156746105 G A LEKR1 Missense_Mutation p.E528K 0.42 tolerated(0.06) possibly_damaging(0.486) TCGA-FR-A8YC-06 3 156763413 156763413 G A LEKR1 Silent p.P651P 0.21 TCGA-FR-A8YC-06 3 157131856 157131856 G A VEPH1 Silent p.F240F 0.44 TCGA-FR-A8YC-06 3 157146176 157146176 C T VEPH1 Missense_Mutation p.E211K 0.47 deleterious(0.01) benign(0.24) TCGA-FR-A8YC-06 3 158261980 158261980 C T RSRC1 Silent p.I307I 0.40 TCGA-FR-A8YC-06 3 158422686 158422686 C T RARRES1 Missense_Mutation p.R189K 0.30 tolerated(0.3) benign(0.023) TCGA-FR-A8YC-06 3 164755769 164755769 A T SI Missense_Mutation p.L782H 0.22 deleterious(0) possibly_damaging(0.859) TCGA-FR-A8YC-06 3 167000194 167000194 G A ZBBX Nonsense_Mutation p.R696* 0.47 TCGA-FR-A8YC-06 3 167159955 167159955 C T SERPINI2 Missense_Mutation p.G387E 0.19 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 167245747 167245747 G A WDR49 Missense_Mutation p.S470L 0.27 deleterious(0.01) possibly_damaging(0.737) TCGA-FR-A8YC-06 3 167246921 167246921 C T WDR49 Silent p.S423S 0.40 TCGA-FR-A8YC-06 3 167246977 167246977 C T WDR49 Missense_Mutation p.D405N 0.31 tolerated(1) benign(0.003) TCGA-FR-A8YC-06 3 168833265 168833265 C T MECOM Missense_Mutation p.G676R 0.47 tolerated(0.13) benign(0.139) TCGA-FR-A8YC-06 3 169555311 169555311 G A LRRIQ4 Silent p.G525G 0.42 TCGA-FR-A8YC-06 3 170216510 170216510 G A SLC7A14 Silent p.F235F 0.25 TCGA-FR-A8YC-06 3 17051376 17051376 G A PLCL2 Missense_Mutation p.D54N 0.43 deleterious(0.01) possibly_damaging(0.821) TCGA-FR-A8YC-06 3 17053082 17053082 C T PLCL2 Silent p.V622V 0.33 TCGA-FR-A8YC-06 3 172474799 172474799 G A ECT2 Missense_Mutation p.M110I 0.50 tolerated(0.19) benign(0.002) TCGA-FR-A8YC-06 3 179094917 179094918 - A MFN1 Frame_Shift_Ins p.I398Nfs*19 0.41 TCGA-FR-A8YC-06 3 182740332 182740332 T A MCCC1 Missense_Mutation p.K581I 0.28 tolerated(0.13) benign(0.275) TCGA-FR-A8YC-06 3 182841878 182841878 C T LAMP3 Silent p.Q414Q 0.37 TCGA-FR-A8YC-06 3 183029462 183029462 T C MCF2L2 Silent p.Q284Q 0.32 TCGA-FR-A8YC-06 3 183854569 183854569 C T EIF2B5 Intron 0.30 TCGA-FR-A8YC-06 3 183906590 183906590 C T ABCF3 Missense_Mutation p.A293V 0.24 tolerated(0.07) benign(0.02) TCGA-FR-A8YC-06 3 184008402 184008402 C T ECE2 Silent p.I689I 0.39 TCGA-FR-A8YC-06 3 186256460 186256460 G A CRYGS 3'UTR 0.53 TCGA-FR-A8YC-06 3 186370280 186370280 G A FETUB Missense_Mutation p.E337K 0.48 deleterious(0.03) possibly_damaging(0.489) TCGA-FR-A8YC-06 3 186445073 186445073 G A KNG1 Silent p.T204T 0.32 TCGA-FR-A8YC-06 3 187447565 187447565 C T BCL6 Missense_Mutation p.D210N 0.29 tolerated(0.53) possibly_damaging(0.463) TCGA-FR-A8YC-06 3 189590713 189590713 C T TP63 Silent p.Y426Y 0.41 TCGA-FR-A8YC-06 3 191000013 191000013 G A UTS2B 5'UTR 0.67 TCGA-FR-A8YC-06 3 191861704 191861704 C T FGF12 3'UTR 0.52 TCGA-FR-A8YC-06 3 193036877 193036877 C T ATP13A5 Missense_Mutation p.E646K 0.37 tolerated(0.36) benign(0.077) TCGA-FR-A8YC-06 3 193039562 193039562 G A ATP13A5 Missense_Mutation p.S608F 0.55 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 3 194080676 194080676 T C LRRC15 Missense_Mutation p.N372S 0.28 deleterious(0.04) benign(0.043) TCGA-FR-A8YC-06 3 194081493 194081493 G A LRRC15 Missense_Mutation p.P100S 0.33 tolerated(0.07) possibly_damaging(0.861) TCGA-FR-A8YC-06 3 195516495 195516495 C T MUC4 Silent p.T652T 0.47 TCGA-FR-A8YC-06 3 197581266 197581266 C T LRCH3 Missense_Mutation p.P532S 0.36 tolerated(0.14) benign(0.021) TCGA-FR-A8YC-06 3 197593059 197593059 C T LRCH3 Silent p.F614F 0.35 TCGA-FR-A8YC-06 3 19924107 19924107 G A EFHB Missense_Mutation p.P755S 0.19 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 3 19975370 19975370 A G EFHB Silent p.P47P 0.43 TCGA-FR-A8YC-06 3 28304820 28304820 C T CMC1 Missense_Mutation p.P20S 0.43 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 3194164 3194164 G A CRBN Missense_Mutation p.S375F 0.37 deleterious(0) possibly_damaging(0.714) TCGA-FR-A8YC-06 3 33135061 33135061 G A TMPPE Silent p.I209I 0.33 TCGA-FR-A8YC-06 3 33738407 33738407 C T CLASP2 Missense_Mutation p.E72K 0.25 tolerated(0.05) benign(0.079) TCGA-FR-A8YC-06 3 35731574 35731574 G A ARPP21 Missense_Mutation p.D163N 0.33 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 3 367650 367650 G A CHL1 Missense_Mutation p.V34I 0.30 tolerated(0.39) benign(0.168) TCGA-FR-A8YC-06 3 36873793 36873793 C T TRANK1 Silent p.K2383K 0.44 TCGA-FR-A8YC-06 3 38126833 38126833 C T DLEC1 Missense_Mutation p.P444S 0.41 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 38639301 38639301 G A SCN5A Silent p.I727I 0.37 TCGA-FR-A8YC-06 3 38651281 38651281 G A SCN5A Missense_Mutation p.S293F 0.23 deleterious(0.02) possibly_damaging(0.741) TCGA-FR-A8YC-06 3 38739962 38739962 G A SCN10A Silent p.I1583I 0.45 TCGA-FR-A8YC-06 3 38770042 38770042 C T SCN10A Silent p.G877G 0.47 TCGA-FR-A8YC-06 3 38802172 38802172 C T SCN10A Missense_Mutation p.G317D 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A8YC-06 3 3886779 3886779 C T LRRN1 Missense_Mutation p.H152Y 0.34 deleterious(0) probably_damaging(0.927) TCGA-FR-A8YC-06 3 38921450 38921450 G A SCN11A Silent p.I1128I 0.54 TCGA-FR-A8YC-06 3 38924784 38924784 C T SCN11A Silent p.V1053V 0.42 TCGA-FR-A8YC-06 3 38938437 38938437 C T SCN11A Missense_Mutation p.E768K 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 39152497 39152497 G A TTC21A Missense_Mutation p.G142S 0.40 tolerated(0.35) benign(0.019) TCGA-FR-A8YC-06 3 39171751 39171751 C T TTC21A Silent p.L748L 0.29 TCGA-FR-A8YC-06 3 39227028 39227028 G A XIRP1 Silent p.T1303T 0.43 TCGA-FR-A8YC-06 3 396424 396424 A T CHL1 Nonsense_Mutation p.K379* 0.31 TCGA-FR-A8YC-06 3 40524150 40524150 C T ZNF619 Missense_Mutation p.P124S 0.38 tolerated(0.08) probably_damaging(0.992) TCGA-FR-A8YC-06 3 40524151 40524151 C T ZNF619 Missense_Mutation p.P124L 0.37 tolerated(0.08) probably_damaging(0.994) TCGA-FR-A8YC-06 3 42636119 42636119 A T SS18L2 3'UTR 0.35 TCGA-FR-A8YC-06 3 42679454 42679454 G A NKTR Missense_Mutation p.R753K 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-FR-A8YC-06 3 42915892 42915892 G A CYP8B1 Missense_Mutation p.P473S 0.50 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YC-06 3 42916897 42916897 C T CYP8B1 Missense_Mutation p.D138N 0.40 tolerated(0.52) possibly_damaging(0.815) TCGA-FR-A8YC-06 3 432808 432808 A C CHL1 Missense_Mutation p.E919D 0.40 tolerated(0.33) probably_damaging(0.985) TCGA-FR-A8YC-06 3 44607119 44607119 G A ZKSCAN7 Silent p.G188G 0.29 TCGA-FR-A8YC-06 3 44839336 44839336 G A KIF15 Missense_Mutation p.G329E 0.46 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 45000726 45000726 A G ZDHHC3 Missense_Mutation p.I68T 0.48 tolerated(0.06) benign(0.028) TCGA-FR-A8YC-06 3 45780148 45780148 C T SACM1L Silent p.S487S 0.38 TCGA-FR-A8YC-06 3 45817382 45817382 C T SLC6A20 Silent p.R151R 0.40 TCGA-FR-A8YC-06 3 46062465 46062465 G A XCR1 Silent p.F325F 0.43 TCGA-FR-A8YC-06 3 47041606 47041606 C T NBEAL2 Silent p.C1339C 0.43 TCGA-FR-A8YC-06 3 47041607 47041607 C T NBEAL2 Missense_Mutation p.P1340S 0.42 tolerated(0.55) benign(0.004) TCGA-FR-A8YC-06 3 47651567 47651567 G A SMARCC1 Missense_Mutation p.P1011L 0.35 deleterious(0.03) unknown(0) TCGA-FR-A8YC-06 3 48474173 48474173 C T CCDC51 Missense_Mutation p.R294K 0.47 tolerated(0.86) benign(0.002) TCGA-FR-A8YC-06 3 48612872 48612872 G A COL7A1 Missense_Mutation p.P2027L 0.43 unknown(0) TCGA-FR-A8YC-06 3 48612873 48612873 G A COL7A1 Missense_Mutation p.P2027S 0.38 unknown(0) TCGA-FR-A8YC-06 3 48621757 48621757 G A COL7A1 Missense_Mutation p.P1391S 0.62 unknown(0) TCGA-FR-A8YC-06 3 48621758 48621758 G A COL7A1 Silent p.P1390P 0.62 TCGA-FR-A8YC-06 3 48696867 48696867 G A CELSR3 Silent p.F1067F 0.41 TCGA-FR-A8YC-06 3 49720538 49720538 G A APEH Missense_Mutation p.M684I 0.44 tolerated(0.4) benign(0.001) TCGA-FR-A8YC-06 3 49936097 49936097 G A MST1R Missense_Mutation p.P525S 0.30 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 49936318 49936318 G A MST1R Silent p.L510L 0.36 TCGA-FR-A8YC-06 3 50219824 50219824 C T SEMA3F Missense_Mutation p.R251W 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 3 50225137 50225137 G A SEMA3F Splice_Site p.X650_splice 0.42 TCGA-FR-A8YC-06 3 50418232 50418232 G A CACNA2D2 Silent p.T263T 0.50 TCGA-FR-A8YC-06 3 51263165 51263165 G A DOCK3 Silent p.V446V 0.46 TCGA-FR-A8YC-06 3 52327021 52327021 T C GLYCTK Missense_Mutation p.L484P 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 52417419 52417419 C T DNAH1 Silent p.F2653F 0.25 TCGA-FR-A8YC-06 3 52485428 52485428 C T TNNC1 Missense_Mutation p.D145N 0.47 deleterious(0.02) probably_damaging(0.99) TCGA-FR-A8YC-06 3 52505978 52505978 C T NISCH Silent p.R186R 0.33 TCGA-FR-A8YC-06 3 52858900 52858900 G A ITIH4 Silent p.V278V 0.43 TCGA-FR-A8YC-06 3 53326416 53326416 G A DCP1A Silent p.L356L 0.43 TCGA-FR-A8YC-06 3 53326417 53326417 G A DCP1A Silent p.L355L 0.41 TCGA-FR-A8YC-06 3 54604005 54604005 G A CACNA2D3 Silent p.P254P 0.40 TCGA-FR-A8YC-06 3 54921994 54921994 G A CACNA2D3 Missense_Mutation p.E689K 0.16 tolerated(0.13) possibly_damaging(0.676) TCGA-FR-A8YC-06 3 54930935 54930935 G A CACNA2D3 Intron 0.49 TCGA-FR-A8YC-06 3 56026144 56026144 G A ERC2 Silent p.I732I 0.43 TCGA-FR-A8YC-06 3 56330423 56330423 C T ERC2 Missense_Mutation p.R233Q 0.38 tolerated(0.13) probably_damaging(0.937) TCGA-FR-A8YC-06 3 57913132 57913132 C T SLMAP 3'UTR 0.46 TCGA-FR-A8YC-06 3 58179142 58179142 G A DNASE1L3 Silent p.I243I 0.48 TCGA-FR-A8YC-06 3 58368343 58368343 G A PXK Missense_Mutation p.V102M 0.42 tolerated(0.22) benign(0.19) TCGA-FR-A8YC-06 3 58520801 58520801 C T ACOX2 Silent p.G11G 0.34 TCGA-FR-A8YC-06 3 62142837 62142837 C T PTPRG Missense_Mutation p.P260L 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 3 62355944 62355944 G A FEZF2 Silent p.F398F 0.40 TCGA-FR-A8YC-06 3 62535645 62535645 G A CADPS Silent p.T633T 0.32 TCGA-FR-A8YC-06 3 69097491 69097491 G A TMF1 Missense_Mutation p.S122L 0.38 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-FR-A8YC-06 3 69168353 69168353 C T LMOD3 Missense_Mutation p.V385M 0.39 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 3 69168971 69168971 C T LMOD3 Missense_Mutation p.E179K 0.43 tolerated(0.53) benign(0.004) TCGA-FR-A8YC-06 3 74315675 74315675 C T CNTN3 Silent p.G981G 0.34 TCGA-FR-A8YC-06 3 7620304 7620304 G A GRM7 Missense_Mutation p.E571K 0.39 tolerated(0.48) benign(0.001) TCGA-FR-A8YC-06 3 7721905 7721905 C T GRM7 Missense_Mutation p.S874L 0.33 deleterious(0.01) benign(0.062) TCGA-FR-A8YC-06 3 77614221 77614221 C A ROBO2 Missense_Mutation p.P616H 0.12 deleterious(0) benign(0.001) TCGA-FR-A8YC-06 3 77614223 77614223 C A ROBO2 Missense_Mutation p.Q617K 0.13 tolerated(0.08) benign(0.084) TCGA-FR-A8YC-06 3 9034637 9034637 G A SRGAP3 Silent p.S837S 0.39 TCGA-FR-A8YC-06 3 9034638 9034638 G A SRGAP3 Missense_Mutation p.S837F 0.39 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 3 9099961 9099961 C T SRGAP3 Missense_Mutation p.E333K 0.42 tolerated(0.08) benign(0.107) TCGA-FR-A8YC-06 3 9106144 9106144 A T SRGAP3 Missense_Mutation p.L203H 0.32 tolerated(0.14) probably_damaging(0.994) TCGA-FR-A8YC-06 3 9146503 9146503 G A SRGAP3 Missense_Mutation p.P95L 0.48 deleterious(0) benign(0.171) TCGA-FR-A8YC-06 3 9547697 9547697 G A LHFPL4 Silent p.N199N 0.58 TCGA-FR-A8YC-06 3 9547698 9547698 T A LHFPL4 Missense_Mutation p.N199I 0.57 deleterious(0.01) possibly_damaging(0.821) TCGA-FR-A8YC-06 3 9729547 9729547 G A MTMR14 Missense_Mutation p.E403K 0.28 deleterious(0.01) possibly_damaging(0.46) TCGA-FR-A8YC-06 3 97806340 97806340 C T OR5AC2 Silent p.S108S 0.44 TCGA-FR-A8YC-06 3 97888460 97888460 A C OR5H15 Missense_Mutation p.K306T 0.34 deleterious(0) benign(0.04) TCGA-FR-A8YC-06 3 97983363 97983363 C T OR5H6 Missense_Mutation p.L79F 0.44 deleterious(0) probably_damaging(0.98) TCGA-FR-A8YC-06 3 97983874 97983874 G A OR5H6 Missense_Mutation p.G249E 0.36 deleterious(0) probably_damaging(0.973) TCGA-FR-A8YC-06 3 97983880 97983880 G A OR5H6 Missense_Mutation p.R251Q 0.38 tolerated(0.22) benign(0.06) TCGA-FR-A8YC-06 3 98002025 98002025 T C OR5H2 Silent p.S98S 0.34 TCGA-FR-A8YC-06 3 98002394 98002394 T A OR5H2 Missense_Mutation p.N221K 0.46 deleterious(0) benign(0.012) TCGA-FR-A8YC-06 3 9877241 9877241 T A TTLL3 3'Flank 0.55 TCGA-FR-A8YC-06 3 99569344 99569344 C T FILIP1L Missense_Mutation p.M392I 0.36 tolerated(0.2) benign(0.091) TCGA-FR-A8YC-06 4 100134860 100134860 C T ADH6 Silent p.G55G 0.44 TCGA-FR-A8YC-06 4 100200661 100200661 G A ADH1A Missense_Mutation p.S342L 0.46 tolerated(0.2) benign(0.039) TCGA-FR-A8YC-06 4 10022918 10022918 C T SLC2A9 Missense_Mutation p.G46R 0.13 tolerated(0.07) benign(0.002) TCGA-FR-A8YC-06 4 100232789 100232789 C T ADH1B Missense_Mutation p.E285K 0.13 tolerated(1) benign(0.004) TCGA-FR-A8YC-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A8YC-06 4 101108990 101108990 C T DDIT4L Silent p.Q142Q 0.42 TCGA-FR-A8YC-06 4 103228745 103228745 G A SLC39A8 Silent p.L134L 0.20 TCGA-FR-A8YC-06 4 104066813 104066813 T C CENPE Missense_Mutation p.K1480R 0.41 benign(0.004) TCGA-FR-A8YC-06 4 104070325 104070325 C T CENPE Missense_Mutation p.E1213K 0.34 possibly_damaging(0.543) TCGA-FR-A8YC-06 4 104084688 104084688 G A CENPE Missense_Mutation p.S557L 0.39 probably_damaging(0.951) TCGA-FR-A8YC-06 4 106156748 106156748 G A TET2 Missense_Mutation p.R550Q 0.17 tolerated(0.74) benign(0.002) TCGA-FR-A8YC-06 4 106156885 106156885 C T TET2 Missense_Mutation p.L596F 0.24 deleterious(0) benign(0.05) TCGA-FR-A8YC-06 4 107092374 107092374 G T TBCK Missense_Mutation p.P705T 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 4 107845166 107845166 C T DKK2 Nonsense_Mutation p.W242* 0.41 TCGA-FR-A8YC-06 4 110862104 110862104 C T EGF Missense_Mutation p.P44S 0.22 tolerated(0.13) possibly_damaging(0.477) TCGA-FR-A8YC-06 4 110864495 110864495 G A EGF Missense_Mutation p.G138E 0.17 deleterious(0) probably_damaging(0.95) TCGA-FR-A8YC-06 4 110882086 110882086 C T EGF Missense_Mutation p.S377F 0.42 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 4 110882137 110882137 G A EGF Missense_Mutation p.R394Q 0.21 tolerated(0.16) benign(0.053) TCGA-FR-A8YC-06 4 110909845 110909845 G A EGF Missense_Mutation p.G905E 0.39 tolerated(0.14) possibly_damaging(0.651) TCGA-FR-A8YC-06 4 111474495 111474495 G A ENPEP Silent p.T842T 0.16 TCGA-FR-A8YC-06 4 114274427 114274427 C T ANK2 Silent p.I1551I 0.42 TCGA-FR-A8YC-06 4 114274762 114274762 G A ANK2 Missense_Mutation p.G1663E 0.18 benign(0.037) TCGA-FR-A8YC-06 4 115544340 115544340 G A UGT8 Missense_Mutation p.E102K 0.23 tolerated(0.12) probably_damaging(0.944) TCGA-FR-A8YC-06 4 115589385 115589385 G A UGT8 Missense_Mutation p.G396E 0.20 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 4 115754844 115754844 T A NDST4 Nonsense_Mutation p.R772* 0.37 TCGA-FR-A8YC-06 4 115767076 115767076 G A NDST4 Missense_Mutation p.S673L 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A8YC-06 4 115858564 115858564 C T NDST4 Silent p.K439K 0.43 TCGA-FR-A8YC-06 4 118975318 118975318 G A NDST3 Missense_Mutation p.E85K 0.16 deleterious(0.04) benign(0.306) TCGA-FR-A8YC-06 4 119978895 119978895 G A SYNPO2 Missense_Mutation p.E1198K 0.43 tolerated(0.14) benign(0.039) TCGA-FR-A8YC-06 4 120214271 120214271 A G USP53 Missense_Mutation p.S1043G 0.36 deleterious_low_confidence(0) benign(0.341) TCGA-FR-A8YC-06 4 122800778 122800778 G A TRPC3 3'UTR 0.29 TCGA-FR-A8YC-06 4 122820812 122820812 T A TRPC3 Missense_Mutation p.E834D 0.43 tolerated(0.21) benign(0.002) TCGA-FR-A8YC-06 4 122833146 122833146 C T TRPC3 Missense_Mutation p.E482K 0.48 deleterious(0.04) benign(0.057) TCGA-FR-A8YC-06 4 122853479 122853479 G A TRPC3 Silent p.L312L 0.67 TCGA-FR-A8YC-06 4 123170782 123170783 - GAAAAATGGG KIAA1109 Frame_Shift_Ins p.W1890Kfs*8 0.08 TCGA-FR-A8YC-06 4 123301382 123301382 T C ADAD1 Missense_Mutation p.V53A 0.19 tolerated(0.33) benign(0.265) TCGA-FR-A8YC-06 4 123342421 123342421 C T ADAD1 Missense_Mutation p.P498L 0.32 deleterious(0) probably_damaging(0.956) TCGA-FR-A8YC-06 4 126369711 126369711 C T FAT4 Missense_Mutation p.H2514Y 0.46 benign(0.428) TCGA-FR-A8YC-06 4 126369858 126369858 G A FAT4 Missense_Mutation p.D2563N 0.15 benign(0.005) TCGA-FR-A8YC-06 4 126370137 126370137 G A FAT4 Missense_Mutation p.D2656N 0.43 possibly_damaging(0.497) TCGA-FR-A8YC-06 4 126372040 126372040 G A FAT4 Missense_Mutation p.G3290E 0.21 probably_damaging(1) TCGA-FR-A8YC-06 4 126373929 126373929 G A FAT4 Missense_Mutation p.G3920R 0.34 probably_damaging(0.998) TCGA-FR-A8YC-06 4 126373930 126373930 G A FAT4 Missense_Mutation p.G3920E 0.34 probably_damaging(0.997) TCGA-FR-A8YC-06 4 126412034 126412034 C T FAT4 Missense_Mutation p.S4686F 0.21 possibly_damaging(0.774) TCGA-FR-A8YC-06 4 128951930 128951930 C T C4orf29 3'UTR 0.45 TCGA-FR-A8YC-06 4 13605340 13605340 T C BOD1L1 Missense_Mutation p.M1062V 0.39 benign(0.001) TCGA-FR-A8YC-06 4 138442555 138442555 G A PCDH18 Silent p.F1012F 0.44 TCGA-FR-A8YC-06 4 138452392 138452392 G A PCDH18 Missense_Mutation p.S284F 0.20 deleterious(0) probably_damaging(0.954) TCGA-FR-A8YC-06 4 141321598 141321598 C T CLGN Missense_Mutation p.G203R 0.25 deleterious(0.01) possibly_damaging(0.65) TCGA-FR-A8YC-06 4 143181712 143181712 G A INPP4B Silent p.A207A 0.33 TCGA-FR-A8YC-06 4 145629453 145629453 G A HHIP Missense_Mutation p.D431N 0.42 tolerated(1) benign(0.003) TCGA-FR-A8YC-06 4 145636485 145636485 A T HHIP Silent p.T527T 0.49 TCGA-FR-A8YC-06 4 146648116 146648116 G A C4orf51 Missense_Mutation p.G121R 0.16 tolerated(0.7) benign(0.18) TCGA-FR-A8YC-06 4 146700611 146700611 G A ZNF827 Silent p.F812F 0.42 TCGA-FR-A8YC-06 4 149041334 149041334 C T NR3C2 Missense_Mutation p.M872I 0.46 deleterious(0) benign(0.076) TCGA-FR-A8YC-06 4 151125029 151125029 C T DCLK2 Silent p.F365F 0.52 TCGA-FR-A8YC-06 4 151356860 151356860 C T LRBA Missense_Mutation p.E2319K 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-FR-A8YC-06 4 151789405 151789405 C T LRBA Silent p.E834E 0.44 TCGA-FR-A8YC-06 4 153897570 153897570 T A FHDC1 Missense_Mutation p.S1043T 0.53 tolerated(0.09) benign(0.408) TCGA-FR-A8YC-06 4 154555383 154555383 C T KIAA0922 Silent p.S1456S 0.38 TCGA-FR-A8YC-06 4 154625763 154625763 C T TLR2 Silent p.S568S 0.43 TCGA-FR-A8YC-06 4 155161857 155161857 C T DCHS2 Silent p.Q1942Q 0.36 TCGA-FR-A8YC-06 4 155312368 155312368 C T DCHS2 Missense_Mutation p.A28T 0.32 tolerated_low_confidence(0.27) benign(0.007) TCGA-FR-A8YC-06 4 156724898 156724898 A G GUCY1B3 Silent p.V512V 0.34 TCGA-FR-A8YC-06 4 156764950 156764950 G A ASIC5 Silent p.F248F 0.12 TCGA-FR-A8YC-06 4 15720536 15720536 C T BST1 Silent p.S237S 0.30 TCGA-FR-A8YC-06 4 158057798 158057798 G A GLRB Missense_Mutation p.E159K 0.36 deleterious(0) possibly_damaging(0.689) TCGA-FR-A8YC-06 4 158254046 158254046 G A GRIA2 Missense_Mutation p.E320K 0.45 tolerated(0.09) benign(0.051) TCGA-FR-A8YC-06 4 158257801 158257801 A T GRIA2 Missense_Mutation p.E582D 0.44 tolerated(0.73) benign(0.005) TCGA-FR-A8YC-06 4 16165035 16165035 C T TAPT1 Missense_Mutation p.E534K 0.10 tolerated(0.09) benign(0.178) TCGA-FR-A8YC-06 4 162421272 162421272 T A FSTL5 Missense_Mutation p.N452Y 0.30 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 4 162680651 162680651 G A FSTL5 Silent p.L213L 0.39 TCGA-FR-A8YC-06 4 164272739 164272739 C T NPY5R Silent p.S438S 0.41 TCGA-FR-A8YC-06 4 16504613 16504613 G A LDB2 Intron 0.36 TCGA-FR-A8YC-06 4 166405617 166405617 C T CPE Silent p.F278F 0.16 TCGA-FR-A8YC-06 4 166910562 166910562 G A TLL1 Missense_Mutation p.D67N 0.17 deleterious_low_confidence(0) benign(0.258) TCGA-FR-A8YC-06 4 166929162 166929162 C T TLL1 Silent p.F293F 0.42 TCGA-FR-A8YC-06 4 166935681 166935681 C T TLL1 Silent p.I337I 0.43 TCGA-FR-A8YC-06 4 166963274 166963274 G A TLL1 Missense_Mutation p.G453S 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-FR-A8YC-06 4 166976285 166976285 G A TLL1 Missense_Mutation p.E528K 0.41 tolerated(0.14) benign(0.074) TCGA-FR-A8YC-06 4 167656020 167656020 C T SPOCK3 3'UTR 0.39 TCGA-FR-A8YC-06 4 167675862 167675862 A G SPOCK3 Missense_Mutation p.L246S 0.22 tolerated(0.14) benign(0.326) TCGA-FR-A8YC-06 4 169098906 169098906 G A ANXA10 Missense_Mutation p.G166R 0.33 tolerated(0.08) probably_damaging(0.982) TCGA-FR-A8YC-06 4 169204680 169204680 C T DDX60 Missense_Mutation p.E547K 0.44 deleterious(0.04) possibly_damaging(0.703) TCGA-FR-A8YC-06 4 169300518 169300518 C T DDX60L Nonsense_Mutation p.W1453* 0.26 TCGA-FR-A8YC-06 4 169305901 169305901 G A DDX60L Silent p.I1326I 0.40 TCGA-FR-A8YC-06 4 169348333 169348333 C T DDX60L Silent p.R606R 0.17 TCGA-FR-A8YC-06 4 169351661 169351661 C T DDX60L Missense_Mutation p.D549N 0.42 tolerated(0.74) benign(0.002) TCGA-FR-A8YC-06 4 169353704 169353704 G A DDX60L Missense_Mutation p.P473L 0.29 deleterious(0.02) benign(0.001) TCGA-FR-A8YC-06 4 169632751 169632751 T C PALLD Silent p.S547S 0.17 TCGA-FR-A8YC-06 4 172735794 172735794 C T GALNTL6 Silent p.F21F 0.18 TCGA-FR-A8YC-06 4 1729922 1729922 C T TACC3 Silent p.L265L 0.21 TCGA-FR-A8YC-06 4 174254278 174254278 G A HMGB2 Missense_Mutation p.P80S 0.38 deleterious(0.03) possibly_damaging(0.86) TCGA-FR-A8YC-06 4 17528472 17528472 G A CLRN2 Missense_Mutation p.V156M 0.37 tolerated(0.28) benign(0) TCGA-FR-A8YC-06 4 175896691 175896691 C T ADAM29 Silent p.L5L 0.32 TCGA-FR-A8YC-06 4 175898119 175898119 G A ADAM29 Silent p.V481V 0.43 TCGA-FR-A8YC-06 4 177113986 177113986 G A SPATA4 Silent p.I160I 0.41 TCGA-FR-A8YC-06 4 177142418 177142418 G A ASB5 Silent p.I186I 0.45 TCGA-FR-A8YC-06 4 177608987 177608987 C T VEGFC Missense_Mutation p.D267N 0.44 tolerated(0.65) benign(0.001) TCGA-FR-A8YC-06 4 183574999 183574999 C T TENM3 Missense_Mutation p.S355F 0.18 deleterious(0.03) benign(0.007) TCGA-FR-A8YC-06 4 185689403 185689403 A G ACSL1 Intron 0.49 TCGA-FR-A8YC-06 4 186435448 186435448 G A PDLIM3 Missense_Mutation p.P125L 0.46 deleterious(0.02) probably_damaging(0.987) TCGA-FR-A8YC-06 4 186544533 186544533 C T SORBS2 Missense_Mutation p.E780K 0.40 deleterious(0.01) possibly_damaging(0.493) TCGA-FR-A8YC-06 4 187004270 187004270 C T TLR3 Missense_Mutation p.A477V 0.47 tolerated(0.62) benign(0.002) TCGA-FR-A8YC-06 4 187078722 187078722 G A FAM149A Missense_Mutation p.G193E 0.20 tolerated(0.7) benign(0.009) TCGA-FR-A8YC-06 4 187524901 187524901 G A FAT1 Silent p.S3593S 0.48 TCGA-FR-A8YC-06 4 187539565 187539565 G A FAT1 Silent p.I2725I 0.49 TCGA-FR-A8YC-06 4 188924076 188924076 G A ZFP42 Missense_Mutation p.E39K 0.43 tolerated(0.41) benign(0.005) TCGA-FR-A8YC-06 4 189020053 189020053 G A TRIML2 Intron 0.75 TCGA-FR-A8YC-06 4 189065190 189065190 G A TRIML1 Silent p.R253R 0.28 TCGA-FR-A8YC-06 4 20568969 20568969 C T SLIT2 Missense_Mutation p.P937L 0.44 deleterious(0.02) probably_damaging(0.909) TCGA-FR-A8YC-06 4 20620463 20620463 C T SLIT2 Missense_Mutation p.T1474I 0.32 deleterious(0.05) benign(0.368) TCGA-FR-A8YC-06 4 20852276 20852276 C T KCNIP4 Missense_Mutation p.E60K 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-FR-A8YC-06 4 22749289 22749289 G A GBA3 Missense_Mutation p.M219I 0.37 tolerated(0.31) benign(0.002) TCGA-FR-A8YC-06 4 22749332 22749332 C T GBA3 Missense_Mutation p.P234S 0.41 tolerated(0.11) benign(0.003) TCGA-FR-A8YC-06 4 23816208 23816208 G A PPARGC1A Missense_Mutation p.P300S 0.14 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 4 25014039 25014039 G A LGI2 Silent p.I246I 0.25 TCGA-FR-A8YC-06 4 25314446 25314446 G A ZCCHC4 Silent p.R5R 0.16 TCGA-FR-A8YC-06 4 25677813 25677813 C T SLC34A2 Silent p.I505I 0.40 TCGA-FR-A8YC-06 4 25823654 25823654 C T SEL1L3 Silent p.L418L 0.15 TCGA-FR-A8YC-06 4 265244 265244 G A ZNF732 Missense_Mutation p.H468Y 0.34 deleterious(0.02) possibly_damaging(0.844) TCGA-FR-A8YC-06 4 3241758 3241758 G A HTT Missense_Mutation p.R3134Q 0.60 benign(0.002) TCGA-FR-A8YC-06 4 38020051 38020051 C T TBC1D1 Missense_Mutation p.S320F 0.41 deleterious(0) possibly_damaging(0.879) TCGA-FR-A8YC-06 4 38126633 38126633 C T TBC1D1 Silent p.L1005L 0.47 TCGA-FR-A8YC-06 4 40045506 40045506 G A RP11-333E13.4 RNA 0.33 TCGA-FR-A8YC-06 4 40104280 40104280 C T N4BP2 Missense_Mutation p.S272F 0.14 deleterious(0.05) possibly_damaging(0.778) TCGA-FR-A8YC-06 4 40440332 40440332 G A RBM47 Silent p.N193N 0.43 TCGA-FR-A8YC-06 4 40776341 40776341 C T NSUN7 Missense_Mutation p.S183L 0.39 deleterious(0) probably_damaging(0.984) TCGA-FR-A8YC-06 4 40818136 40818136 C T APBB2 Silent p.Q751Q 0.42 TCGA-FR-A8YC-06 4 40827930 40827930 C G APBB2 Missense_Mutation p.G597A 0.40 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 4 41684417 41684417 G A LIMCH1 Missense_Mutation p.G878E 0.48 tolerated(0.73) benign(0.001) TCGA-FR-A8YC-06 4 41749390 41749390 G A PHOX2B Silent p.I135I 0.35 TCGA-FR-A8YC-06 4 41750502 41750502 G A PHOX2B Silent p.F42F 0.25 TCGA-FR-A8YC-06 4 419657 419657 C T ABCA11P RNA 0.45 TCGA-FR-A8YC-06 4 41984070 41984070 C T DCAF4L1 Silent p.F87F 0.17 TCGA-FR-A8YC-06 4 42414957 42414957 C T ATP8A1 Silent p.T1157T 0.25 TCGA-FR-A8YC-06 4 42466932 42466932 G A ATP8A1 Missense_Mutation p.S829F 0.19 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 4 42577716 42577716 C T ATP8A1 Missense_Mutation p.D377N 0.42 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 4 4304184 4304184 C T ZBTB49 Silent p.F207F 0.44 TCGA-FR-A8YC-06 4 4304782 4304782 C T ZBTB49 Missense_Mutation p.P407S 0.35 tolerated(0.06) benign(0.437) TCGA-FR-A8YC-06 4 47625664 47625664 C T CORIN Missense_Mutation p.E822K 0.42 tolerated(0.16) possibly_damaging(0.601) TCGA-FR-A8YC-06 4 47938833 47938833 G A CNGA1 Nonsense_Mutation p.R629* 0.52 TCGA-FR-A8YC-06 4 52899773 52899773 G C SGCB Missense_Mutation p.R23G 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-FR-A8YC-06 4 52951089 52951089 C T SPATA18 Missense_Mutation p.S496L 0.40 deleterious(0.02) probably_damaging(0.947) TCGA-FR-A8YC-06 4 54248452 54248452 C T FIP1L1 Missense_Mutation p.P60S 0.12 deleterious(0.02) benign(0.298) TCGA-FR-A8YC-06 4 54344801 54344801 C A LNX1 Missense_Mutation p.D532Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 4 54362399 54362399 G A LNX1 Missense_Mutation p.H381Y 0.38 deleterious(0) probably_damaging(0.912) TCGA-FR-A8YC-06 4 55971088 55971088 C T KDR Nonsense_Mutation p.W570* 0.42 TCGA-FR-A8YC-06 4 55984888 55984888 C T KDR Missense_Mutation p.D81N 0.19 tolerated(0.12) benign(0.251) TCGA-FR-A8YC-06 4 56447040 56447040 C T PDCL2 Missense_Mutation p.E56K 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-FR-A8YC-06 4 57389990 57389990 C T ARL9 Missense_Mutation p.T107I 0.24 tolerated(0.23) benign(0.01) TCGA-FR-A8YC-06 4 59360 59360 C T ZNF595 Missense_Mutation p.S14F 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FR-A8YC-06 4 6043935 6043935 C T JAKMIP1 Missense_Mutation p.G683E 0.41 tolerated(0.28) possibly_damaging(0.756) TCGA-FR-A8YC-06 4 62363028 62363028 T G LPHN3 Missense_Mutation p.L6R 0.09 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 4 62542557 62542557 A G LPHN3 Missense_Mutation p.T95A 0.47 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 4 62598708 62598708 T A LPHN3 Missense_Mutation p.F211I 0.35 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 4 62903458 62903458 G A LPHN3 Missense_Mutation p.E1133K 0.22 deleterious(0) possibly_damaging(0.624) TCGA-FR-A8YC-06 4 66231743 66231743 G A EPHA5 Missense_Mutation p.P653S 0.46 deleterious(0.01) probably_damaging(0.956) TCGA-FR-A8YC-06 4 68441155 68441155 C T STAP1 Missense_Mutation p.S82L 0.49 tolerated(0.2) benign(0.04) TCGA-FR-A8YC-06 4 6865434 6865434 C T KIAA0232 Missense_Mutation p.R1109C 0.42 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 4 69535647 69535647 C T UGT2B15 Silent p.L230L 0.39 TCGA-FR-A8YC-06 4 69536343 69536343 C T UGT2B15 5'UTR 0.14 TCGA-FR-A8YC-06 4 69683793 69683793 G A UGT2B10 Nonsense_Mutation p.W255* 0.38 TCGA-FR-A8YC-06 4 69798449 69798449 C T UGT2A3 Missense_Mutation p.G298E 0.20 deleterious(0) probably_damaging(0.972) TCGA-FR-A8YC-06 4 69817061 69817061 C T UGT2A3 Missense_Mutation p.E140K 0.07 tolerated(0.24) benign(0.019) TCGA-FR-A8YC-06 4 70078356 70078356 G A UGT2B11 Missense_Mutation p.P269S 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 4 70160698 70160698 C T UGT2B28 3'UTR 0.50 TCGA-FR-A8YC-06 4 70352415 70352415 C T UGT2B4 Splice_Site p.X335_splice 0.13 TCGA-FR-A8YC-06 4 70359421 70359421 G A UGT2B4 Missense_Mutation p.P287L 0.39 deleterious(0.01) probably_damaging(0.972) TCGA-FR-A8YC-06 4 70359425 70359425 T C UGT2B4 Missense_Mutation p.K286E 0.46 deleterious(0.02) benign(0.052) TCGA-FR-A8YC-06 4 70360928 70360928 G A UGT2B4 Missense_Mutation p.L218F 0.19 tolerated(0.15) benign(0.108) TCGA-FR-A8YC-06 4 70505092 70505092 C T UGT2A2 Silent p.K89K 0.15 TCGA-FR-A8YC-06 4 70721050 70721050 G A SULT1E1 Silent p.F80F 0.37 TCGA-FR-A8YC-06 4 71200931 71200931 G A CABS1 Missense_Mutation p.D59N 0.20 deleterious(0.04) probably_damaging(0.953) TCGA-FR-A8YC-06 4 71200973 71200973 G A CABS1 Missense_Mutation p.E73K 0.19 deleterious(0.04) possibly_damaging(0.908) TCGA-FR-A8YC-06 4 71201958 71201958 G A CABS1 3'UTR 0.38 TCGA-FR-A8YC-06 4 71275274 71275274 C T PROL1 Nonsense_Mutation p.R77* 0.42 TCGA-FR-A8YC-06 4 71275399 71275399 G A PROL1 Silent p.R118R 0.40 TCGA-FR-A8YC-06 4 71388506 71388506 A C AMTN Missense_Mutation p.K30T 0.37 deleterious(0.03) possibly_damaging(0.73) TCGA-FR-A8YC-06 4 71508848 71508848 C T ENAM Missense_Mutation p.H569Y 0.39 tolerated(0.19) possibly_damaging(0.844) TCGA-FR-A8YC-06 4 73962911 73962911 A C ANKRD17 Silent p.S1700S 0.21 TCGA-FR-A8YC-06 4 74301977 74301977 A G AFP 5'UTR 0.34 TCGA-FR-A8YC-06 4 74302887 74302887 G A AFP Silent p.L32L 0.23 TCGA-FR-A8YC-06 4 74315776 74315776 C T AFP Silent p.I405I 0.10 TCGA-FR-A8YC-06 4 74364828 74364828 C T AFM Intron 0.37 TCGA-FR-A8YC-06 4 76489329 76489329 G A C4orf26 Silent p.K39K 0.32 TCGA-FR-A8YC-06 4 77278671 77278671 C T CCDC158 Missense_Mutation p.E677K 0.21 deleterious(0) benign(0.033) TCGA-FR-A8YC-06 4 77300451 77300451 C T CCDC158 Missense_Mutation p.E341K 0.43 deleterious(0.01) probably_damaging(0.984) TCGA-FR-A8YC-06 4 77691967 77691967 C T SHROOM3 Silent p.N1846N 0.20 TCGA-FR-A8YC-06 4 77691968 77691968 C T SHROOM3 Silent p.L1847L 0.20 TCGA-FR-A8YC-06 4 79207685 79207685 C T FRAS1 Missense_Mutation p.S509F 0.49 benign(0.089) TCGA-FR-A8YC-06 4 79207686 79207686 C T FRAS1 Silent p.S509S 0.49 TCGA-FR-A8YC-06 4 79328966 79328966 C T FRAS1 Missense_Mutation p.P1427S 0.47 benign(0.002) TCGA-FR-A8YC-06 4 79507429 79507429 G A ANXA3 Missense_Mutation p.E110K 0.27 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 4 80247041 80247041 G A NAA11 5'UTR 0.24 TCGA-FR-A8YC-06 4 80328028 80328028 G A GK2 Missense_Mutation p.H443Y 0.34 deleterious(0.04) benign(0.002) TCGA-FR-A8YC-06 4 80328840 80328840 C A GK2 Missense_Mutation p.R172I 0.42 deleterious(0.02) probably_damaging(0.93) TCGA-FR-A8YC-06 4 81967227 81967227 G A BMP3 Missense_Mutation p.G218R 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 4 8229306 8229306 G A SH3TC1 Missense_Mutation p.A629T 0.53 deleterious(0.05) probably_damaging(0.999) TCGA-FR-A8YC-06 4 8229933 8229933 C T SH3TC1 Missense_Mutation p.H838Y 0.40 tolerated(0.39) benign(0.006) TCGA-FR-A8YC-06 4 8230151 8230151 G A SH3TC1 Silent p.G910G 0.51 TCGA-FR-A8YC-06 4 84185513 84185513 A G COQ2 Missense_Mutation p.Y369H 0.37 tolerated(0.26) benign(0.012) TCGA-FR-A8YC-06 4 84350834 84350834 C T HELQ Silent p.K787K 0.12 TCGA-FR-A8YC-06 4 84511411 84511411 T C AGPAT9 Missense_Mutation p.V235A 0.45 tolerated(0.15) benign(0.41) TCGA-FR-A8YC-06 4 8477792 8477792 T G TRMT44 3'UTR 0.32 TCGA-FR-A8YC-06 4 85540666 85540666 C T CDS1 Missense_Mutation p.S187L 0.39 deleterious(0) probably_damaging(0.981) TCGA-FR-A8YC-06 4 86814 86814 C T Z95704.2 RNA 0.23 TCGA-FR-A8YC-06 4 86916771 86916771 T C ARHGAP24 Missense_Mutation p.M655T 0.43 deleterious(0) possibly_damaging(0.625) TCGA-FR-A8YC-06 4 87701599 87701599 C T PTPN13 Missense_Mutation p.S1984L 0.36 tolerated(0.23) benign(0.025) TCGA-FR-A8YC-06 4 88584263 88584263 G A DMP1 Missense_Mutation p.E445K 0.37 tolerated(0.14) unknown(0) TCGA-FR-A8YC-06 4 8869749 8869749 G A HMX1 Silent p.S239S 0.38 TCGA-FR-A8YC-06 4 88996033 88996033 C T PKD2 Silent p.I864I 0.53 TCGA-FR-A8YC-06 4 88996785 88996785 C T PKD2 Missense_Mutation p.S949F 0.46 deleterious(0) possibly_damaging(0.758) TCGA-FR-A8YC-06 4 89352449 89352449 C T HERC6 Missense_Mutation p.P748S 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 4 89408287 89408287 C T HERC5 Missense_Mutation p.S640L 0.30 deleterious(0) benign(0.204) TCGA-FR-A8YC-06 4 89571136 89571136 T G HERC3 Silent p.S124S 0.47 TCGA-FR-A8YC-06 4 93225885 93225885 C T GRID2 Silent p.I26I 0.22 TCGA-FR-A8YC-06 4 94006163 94006163 C T GRID2 Nonsense_Mutation p.Q88* 0.23 TCGA-FR-A8YC-06 4 94006212 94006212 C T GRID2 Missense_Mutation p.S104F 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A8YC-06 4 94032040 94032040 G A GRID2 Missense_Mutation p.R224Q 0.40 tolerated(0.12) benign(0.317) TCGA-FR-A8YC-06 4 94376920 94376920 G A GRID2 Silent p.R551R 0.45 TCGA-FR-A8YC-06 4 95210806 95210806 C T SMARCAD1 3'UTR 0.35 TCGA-FR-A8YC-06 4 9987306 9987306 C T SLC2A9 Missense_Mutation p.M174I 0.40 tolerated(0.24) benign(0.163) TCGA-FR-A8YC-06 5 101595993 101595993 G A SLCO4C1 Missense_Mutation p.S351F 0.26 deleterious(0) probably_damaging(0.971) TCGA-FR-A8YC-06 5 101834341 101834341 C T SLCO6A1 Missense_Mutation p.A70T 0.47 tolerated(0.54) benign(0.056) TCGA-FR-A8YC-06 5 110097133 110097133 C T SLC25A46 Missense_Mutation p.T303I 0.22 tolerated(0.05) benign(0.008) TCGA-FR-A8YC-06 5 11022919 11022919 G A CTNND2 Silent p.I987I 0.20 TCGA-FR-A8YC-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.19 TCGA-FR-A8YC-06 5 110712572 110712572 G A CAMK4 Silent p.E106E 0.45 TCGA-FR-A8YC-06 5 112173606 112173606 C T APC Missense_Mutation p.T772I 0.17 probably_damaging(0.991) TCGA-FR-A8YC-06 5 11397203 11397203 G A CTNND2 Silent p.T184T 0.19 TCGA-FR-A8YC-06 5 115230843 115230843 C T AP3S1 Silent p.F111F 0.20 TCGA-FR-A8YC-06 5 115358129 115358129 G A CTD-2287O16.3 Missense_Mutation p.G15E 0.38 TCGA-FR-A8YC-06 5 118469016 118469016 C T DMXL1 Missense_Mutation p.S502F 0.41 deleterious(0) probably_damaging(0.968) TCGA-FR-A8YC-06 5 121187647 121187647 G A FTMT 5'Flank 0.50 TCGA-FR-A8YC-06 5 121188234 121188234 C T FTMT Silent p.F192F 0.19 TCGA-FR-A8YC-06 5 121488194 121488194 C T ZNF474 Missense_Mutation p.S170F 0.52 tolerated(0.65) benign(0.009) TCGA-FR-A8YC-06 5 121759153 121759153 C T SNCAIP Missense_Mutation p.P241S 0.15 tolerated(0.19) benign(0.008) TCGA-FR-A8YC-06 5 121759238 121759238 G A SNCAIP Missense_Mutation p.R269Q 0.38 tolerated(0.83) benign(0.184) TCGA-FR-A8YC-06 5 121787043 121787043 G A SNCAIP Missense_Mutation p.G834E 0.23 tolerated(0.28) probably_damaging(1) TCGA-FR-A8YC-06 5 122163296 122163296 C T SNX2 Silent p.T488T 0.05 TCGA-FR-A8YC-06 5 125971872 125971872 C T C5orf48 Missense_Mutation p.S115L 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 5 126213899 126213899 G A MARCH3 Missense_Mutation p.T194I 0.33 tolerated(0.08) benign(0.298) TCGA-FR-A8YC-06 5 127681084 127681084 C T FBN2 Missense_Mutation p.R1061Q 0.37 tolerated(0.1) benign(0.042) TCGA-FR-A8YC-06 5 127697450 127697450 C T FBN2 Silent p.G840G 0.41 TCGA-FR-A8YC-06 5 127714523 127714523 G A FBN2 Missense_Mutation p.S555F 0.21 deleterious(0) possibly_damaging(0.899) TCGA-FR-A8YC-06 5 128320943 128320943 C T SLC27A6 Missense_Mutation p.S200L 0.45 deleterious(0.02) benign(0.099) TCGA-FR-A8YC-06 5 128351735 128351735 G A SLC27A6 Missense_Mutation p.R376K 0.43 tolerated(1) benign(0) TCGA-FR-A8YC-06 5 128351750 128351750 G A SLC27A6 Missense_Mutation p.G381E 0.21 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 5 128365275 128365275 G A SLC27A6 Missense_Mutation p.E520K 0.18 deleterious(0) possibly_damaging(0.786) TCGA-FR-A8YC-06 5 128365384 128365384 G A SLC27A6 Missense_Mutation p.R556Q 0.45 deleterious(0.05) benign(0.038) TCGA-FR-A8YC-06 5 128983570 128983570 G A ADAMTS19 Missense_Mutation p.R656Q 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A8YC-06 5 129037263 129037263 G A ADAMTS19 Nonsense_Mutation p.W1040* 0.37 TCGA-FR-A8YC-06 5 130782216 130782216 G A RAPGEF6 Silent p.F1135F 0.44 TCGA-FR-A8YC-06 5 131409789 131409789 G A CSF2 Missense_Mutation p.V59I 0.45 tolerated(0.31) possibly_damaging(0.628) TCGA-FR-A8YC-06 5 131993893 131993893 C T IL13 Silent p.L5L 0.45 TCGA-FR-A8YC-06 5 134343727 134343727 C T CATSPER3 Silent p.F191F 0.39 TCGA-FR-A8YC-06 5 134907489 134907489 C T CXCL14 3'UTR 0.18 TCGA-FR-A8YC-06 5 135207264 135207264 G T SLC25A48 Intron 0.25 TCGA-FR-A8YC-06 5 135272340 135272340 G A FBXL21 5'Flank 0.46 TCGA-FR-A8YC-06 5 135391458 135391458 C T TGFBI Silent p.P500P 0.47 TCGA-FR-A8YC-06 5 135692677 135692677 C T TRPC7 Silent p.Q133Q 0.44 TCGA-FR-A8YC-06 5 135692946 135692946 C T TRPC7 Missense_Mutation p.E44K 0.22 deleterious(0) benign(0.417) TCGA-FR-A8YC-06 5 13692142 13692142 G A DNAH5 Missense_Mutation p.P4609L 0.34 possibly_damaging(0.908) TCGA-FR-A8YC-06 5 13701416 13701416 C T DNAH5 Missense_Mutation p.G4490R 0.19 probably_damaging(0.988) TCGA-FR-A8YC-06 5 13701475 13701475 G A DNAH5 Missense_Mutation p.S4470L 0.41 possibly_damaging(0.651) TCGA-FR-A8YC-06 5 13727644 13727644 G A DNAH5 Missense_Mutation p.S4002F 0.21 possibly_damaging(0.788) TCGA-FR-A8YC-06 5 13737548 13737548 C T DNAH5 Silent p.R3756R 0.14 TCGA-FR-A8YC-06 5 13794059 13794059 C A DNAH5 Nonsense_Mutation p.E2666* 0.35 TCGA-FR-A8YC-06 5 13811890 13811890 G A DNAH5 Missense_Mutation p.R2425C 0.16 benign(0.037) TCGA-FR-A8YC-06 5 13841969 13841969 C T DNAH5 Silent p.T1772T 0.22 TCGA-FR-A8YC-06 5 13862800 13862800 C T DNAH5 Silent p.V1551V 0.15 TCGA-FR-A8YC-06 5 13867948 13867948 C T DNAH5 Missense_Mutation p.E1330K 0.33 benign(0.292) TCGA-FR-A8YC-06 5 13901552 13901552 G A DNAH5 Missense_Mutation p.P621S 0.45 benign(0.036) TCGA-FR-A8YC-06 5 13901666 13901666 G T DNAH5 Missense_Mutation p.L583I 0.51 possibly_damaging(0.694) TCGA-FR-A8YC-06 5 13914721 13914721 C T DNAH5 Missense_Mutation p.A410T 0.41 possibly_damaging(0.787) TCGA-FR-A8YC-06 5 139876131 139876131 C T ANKHD1 Missense_Mutation p.L758F 0.42 unknown(0) TCGA-FR-A8YC-06 5 140176493 140176493 C T PCDHA2 Silent p.L648L 0.46 TCGA-FR-A8YC-06 5 140182126 140182126 G A PCDHA3 Silent p.V448V 0.44 TCGA-FR-A8YC-06 5 140188060 140188060 G A PCDHA4 Missense_Mutation p.G430R 0.21 tolerated_low_confidence(0.07) benign(0.365) TCGA-FR-A8YC-06 5 140188687 140188687 G A PCDHA4 Missense_Mutation p.E639K 0.48 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-FR-A8YC-06 5 140201371 140201371 C T PCDHA5 Missense_Mutation p.S4F 0.27 tolerated_low_confidence(0.08) benign(0.035) TCGA-FR-A8YC-06 5 140201428 140201428 G A PCDHA5 Nonsense_Mutation p.W23* 0.18 TCGA-FR-A8YC-06 5 140202746 140202746 C T PCDHA5 Silent p.F462F 0.42 TCGA-FR-A8YC-06 5 140209202 140209202 C T PCDHA6 Missense_Mutation p.S509L 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.55) TCGA-FR-A8YC-06 5 140215589 140215589 G A PCDHA7 Missense_Mutation p.G541S 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FR-A8YC-06 5 140221340 140221340 C T PCDHA8 Missense_Mutation p.S145F 0.35 deleterious_low_confidence(0.01) benign(0.346) TCGA-FR-A8YC-06 5 140222902 140222902 C T PCDHA8 Silent p.L666L 0.47 TCGA-FR-A8YC-06 5 140241169 140241169 G A AC005609.1 3'UTR 0.30 TCGA-FR-A8YC-06 5 140242566 140242566 G A AC005609.1 Missense_Mutation p.S137L 0.30 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-FR-A8YC-06 5 140249341 140249341 G A PCDHA11 Missense_Mutation p.G218E 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A8YC-06 5 140249980 140249980 C T PCDHA11 Missense_Mutation p.S431L 0.14 tolerated_low_confidence(0.06) benign(0.358) TCGA-FR-A8YC-06 5 140255890 140255890 C T PCDHA12 Missense_Mutation p.S278F 0.39 tolerated_low_confidence(0.42) benign(0.04) TCGA-FR-A8YC-06 5 140262751 140262751 G A PCDHA13 Missense_Mutation p.G300R 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A8YC-06 5 140262830 140262830 G A PCDHA13 Missense_Mutation p.G326E 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A8YC-06 5 140263154 140263154 C T PCDHA13 Missense_Mutation p.S434L 0.43 deleterious_low_confidence(0.04) benign(0.346) TCGA-FR-A8YC-06 5 140306648 140306648 C T PCDHAC1 Silent p.F57F 0.55 TCGA-FR-A8YC-06 5 140308280 140308280 C T PCDHAC1 Silent p.S601S 0.41 TCGA-FR-A8YC-06 5 140308927 140308927 G A PCDHAC1 Intron 0.20 TCGA-FR-A8YC-06 5 140347229 140347229 G A PCDHAC2 Missense_Mutation p.R293K 0.24 tolerated(0.28) benign(0.004) TCGA-FR-A8YC-06 5 140348302 140348302 G A PCDHAC2 Missense_Mutation p.E651K 0.53 tolerated(1) possibly_damaging(0.497) TCGA-FR-A8YC-06 5 140348542 140348542 T C PCDHAC2 Missense_Mutation p.C731R 0.44 tolerated(0.1) probably_damaging(0.993) TCGA-FR-A8YC-06 5 140433153 140433153 T A PCDHB1 Missense_Mutation p.F700I 0.44 tolerated(0.48) benign(0.152) TCGA-FR-A8YC-06 5 140433273 140433273 C T PCDHB1 Silent p.L740L 0.15 TCGA-FR-A8YC-06 5 140474407 140474407 G A PCDHB2 Silent p.P11P 0.41 TCGA-FR-A8YC-06 5 140482776 140482776 C T PCDHB3 3'UTR 0.29 TCGA-FR-A8YC-06 5 140502882 140502882 G A PCDHB4 Silent p.Q434Q 0.50 TCGA-FR-A8YC-06 5 140502934 140502934 C T PCDHB4 Nonsense_Mutation p.Q452* 0.34 TCGA-FR-A8YC-06 5 140503930 140503930 G A PCDHB4 Missense_Mutation p.E784K 0.39 tolerated_low_confidence(0.07) benign(0.013) TCGA-FR-A8YC-06 5 140529949 140529949 G A PCDHB6 Silent p.E37E 0.52 TCGA-FR-A8YC-06 5 140530818 140530818 G A PCDHB6 Missense_Mutation p.G327E 0.44 deleterious(0.03) benign(0.193) TCGA-FR-A8YC-06 5 140537025 140537025 C T PCDHB17 Silent p.T483T 0.16 TCGA-FR-A8YC-06 5 140537835 140537835 G A PCDHB17 3'UTR 0.42 TCGA-FR-A8YC-06 5 140554863 140554863 C T PCDHB7 3'UTR 0.28 TCGA-FR-A8YC-06 5 140557594 140557594 G A PCDHB8 5'UTR 0.04 TCGA-FR-A8YC-06 5 140557821 140557821 C T PCDHB8 Missense_Mutation p.S69F 0.28 tolerated_low_confidence(0.41) possibly_damaging(0.76) TCGA-FR-A8YC-06 5 140558075 140558075 C T PCDHB8 Missense_Mutation p.P154S 0.12 tolerated_low_confidence(0.14) benign(0.035) TCGA-FR-A8YC-06 5 140558185 140558185 G A PCDHB8 Silent p.R190R 0.14 TCGA-FR-A8YC-06 5 140558363 140558363 G A PCDHB8 Missense_Mutation p.V250M 0.11 deleterious_low_confidence(0) possibly_damaging(0.673) TCGA-FR-A8YC-06 5 140558451 140558451 C T PCDHB8 Missense_Mutation p.S279F 0.12 tolerated_low_confidence(0.07) benign(0.027) TCGA-FR-A8YC-06 5 140559344 140559344 G A PCDHB8 Missense_Mutation p.V577M 0.23 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-FR-A8YC-06 5 140562503 140562503 G A PCDHB16 Silent p.V123V 0.43 TCGA-FR-A8YC-06 5 140572313 140572313 G A PCDHB10 Missense_Mutation p.G63E 0.18 tolerated_low_confidence(0.23) benign(0.426) TCGA-FR-A8YC-06 5 140579456 140579456 G A PCDHB11 Missense_Mutation p.E37K 0.41 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FR-A8YC-06 5 140580101 140580101 C T PCDHB11 Missense_Mutation p.R252W 0.12 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-FR-A8YC-06 5 140580245 140580245 G A PCDHB11 Missense_Mutation p.E300K 0.44 deleterious_low_confidence(0.01) benign(0.101) TCGA-FR-A8YC-06 5 140581687 140581687 G A PCDHB11 Silent p.G780G 0.47 TCGA-FR-A8YC-06 5 140590003 140590003 G A PCDHB12 Silent p.A508A 0.41 TCGA-FR-A8YC-06 5 140590269 140590269 G A PCDHB12 Missense_Mutation p.G597D 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A8YC-06 5 140627489 140627489 G A PCDHB15 Silent p.R781R 0.43 TCGA-FR-A8YC-06 5 140730508 140730508 C T PCDHGB1 Silent p.I227I 0.47 TCGA-FR-A8YC-06 5 140736445 140736445 C T PCDHGA4 Missense_Mutation p.P560S 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FR-A8YC-06 5 140736867 140736867 C T PCDHGA4 Silent p.V700V 0.42 TCGA-FR-A8YC-06 5 140744652 140744652 C T PCDHGA5 Missense_Mutation p.P252L 0.41 tolerated_low_confidence(0.12) benign(0.049) TCGA-FR-A8YC-06 5 140751686 140751686 C T PCDHGB3 Silent p.F575F 0.24 TCGA-FR-A8YC-06 5 140755178 140755178 G A PCDHGA6 Missense_Mutation p.D510N 0.43 tolerated_low_confidence(0.21) benign(0.072) TCGA-FR-A8YC-06 5 140755916 140755916 G A PCDHGA6 Missense_Mutation p.E756K 0.14 deleterious_low_confidence(0) possibly_damaging(0.484) TCGA-FR-A8YC-06 5 140764405 140764405 C T PCDHGA7 Nonsense_Mutation p.Q647* 0.49 TCGA-FR-A8YC-06 5 140773631 140773631 C A PCDHGA8 Silent p.I417I 0.35 TCGA-FR-A8YC-06 5 140774194 140774194 C T PCDHGA8 Missense_Mutation p.S605F 0.48 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-FR-A8YC-06 5 140782717 140782717 C T PCDHGA9 Silent p.I66I 0.21 TCGA-FR-A8YC-06 5 140801610 140801610 G A PCDHGA11 Silent p.E272E 0.38 TCGA-FR-A8YC-06 5 140812251 140812278 TCGTAGTGGCCGTCCAGGACCACGGCCA - PCDHGA12 Frame_Shift_Del p.L642Rfs*45 0.11 TCGA-FR-A8YC-06 5 141049592 141049592 C T ARAP3 Missense_Mutation p.E716K 0.38 tolerated(1) benign(0.269) TCGA-FR-A8YC-06 5 142601967 142601967 G A ARHGAP26 Missense_Mutation p.G801R 0.38 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 5 145317642 145317642 G A SH3RF2 Missense_Mutation p.E51K 0.37 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 5 145435775 145435775 G A SH3RF2 Silent p.K518K 0.37 TCGA-FR-A8YC-06 5 145631392 145631392 C T RBM27 Silent p.S466S 0.45 TCGA-FR-A8YC-06 5 145641172 145641172 C T RBM27 Nonsense_Mutation p.R665* 0.39 TCGA-FR-A8YC-06 5 147594597 147594597 C T SPINK6 3'UTR 0.29 TCGA-FR-A8YC-06 5 147665736 147665736 G A SPINK13 3'UTR 0.33 TCGA-FR-A8YC-06 5 14769270 14769270 C T ANKH Missense_Mutation p.E43K 0.18 deleterious(0.02) benign(0.334) TCGA-FR-A8YC-06 5 148577948 148577948 C T ABLIM3 Silent p.F106F 0.09 TCGA-FR-A8YC-06 5 148892649 148892649 G A CSNK1A1 Missense_Mutation p.L222F 0.24 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-FR-A8YC-06 5 150027803 150027803 C T SYNPO Missense_Mutation p.P233L 0.16 tolerated(0.74) benign(0.002) TCGA-FR-A8YC-06 5 150276253 150276253 C T ZNF300 Missense_Mutation p.R199K 0.19 tolerated(0.35) benign(0.009) TCGA-FR-A8YC-06 5 150666947 150666947 G A SLC36A3 Missense_Mutation p.R231C 0.40 deleterious(0) probably_damaging(0.961) TCGA-FR-A8YC-06 5 153077619 153077619 G A GRIA1 Missense_Mutation p.E394K 0.48 deleterious(0.03) probably_damaging(0.987) TCGA-FR-A8YC-06 5 153085288 153085288 T A GRIA1 Missense_Mutation p.I505N 0.39 deleterious(0) possibly_damaging(0.744) TCGA-FR-A8YC-06 5 153175112 153175112 G A GRIA1 Intron 0.47 TCGA-FR-A8YC-06 5 154304094 154304094 C T GEMIN5 Silent p.K438K 0.42 TCGA-FR-A8YC-06 5 156376737 156376737 C T TIMD4 Missense_Mutation p.E229K 0.54 deleterious(0.04) possibly_damaging(0.815) TCGA-FR-A8YC-06 5 156667137 156667137 A T ITK Missense_Mutation p.Y306F 0.46 tolerated(0.05) probably_damaging(0.951) TCGA-FR-A8YC-06 5 156920040 156920040 C T ADAM19 Missense_Mutation p.E617K 0.37 deleterious(0.03) probably_damaging(0.945) TCGA-FR-A8YC-06 5 157158598 157158598 C T THG1L Silent p.H50H 0.18 TCGA-FR-A8YC-06 5 15928372 15928372 C T FBXL7 Silent p.D167D 0.36 TCGA-FR-A8YC-06 5 161118984 161118984 C T GABRA6 Silent p.I288I 0.21 TCGA-FR-A8YC-06 5 161128827 161128827 C T GABRA6 3'UTR 0.18 TCGA-FR-A8YC-06 5 161520910 161520910 C T GABRG2 Missense_Mutation p.P62S 0.46 tolerated(0.47) benign(0.258) TCGA-FR-A8YC-06 5 161530934 161530934 G A GABRG2 Missense_Mutation p.R264Q 0.35 deleterious(0.05) possibly_damaging(0.71) TCGA-FR-A8YC-06 5 161576271 161576271 C T GABRG2 Silent p.V400V 0.40 TCGA-FR-A8YC-06 5 16701276 16701276 G A MYO10 Silent p.P1076P 0.62 TCGA-FR-A8YC-06 5 167489210 167489210 C T TENM2 Silent p.L485L 0.38 TCGA-FR-A8YC-06 5 170148905 170148905 G A KCNIP1 Missense_Mutation p.E120K 0.14 tolerated(0.05) benign(0.121) TCGA-FR-A8YC-06 5 170722972 170722972 C T RANBP17 Silent p.L1042L 0.42 TCGA-FR-A8YC-06 5 173473792 173473792 G A NSG2 Missense_Mutation p.G12R 0.25 tolerated(0.08) possibly_damaging(0.694) TCGA-FR-A8YC-06 5 174869078 174869078 G A DRD1 Missense_Mutation p.S342L 0.21 tolerated(0.12) possibly_damaging(0.905) TCGA-FR-A8YC-06 5 176024718 176024718 G A GPRIN1 Silent p.S706S 0.35 TCGA-FR-A8YC-06 5 176314042 176314042 A G HK3 Silent p.F606F 0.42 TCGA-FR-A8YC-06 5 176316469 176316469 G A HK3 Missense_Mutation p.S276F 0.53 deleterious(0) probably_damaging(0.972) TCGA-FR-A8YC-06 5 176517623 176517623 C T FGFR4 Silent p.I108I 0.44 TCGA-FR-A8YC-06 5 176932052 176932052 G A DOK3 Silent p.V200V 0.39 TCGA-FR-A8YC-06 5 178392201 178392201 C T ZNF454 Missense_Mutation p.H266Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 5 178506519 178506519 G T ZNF354C Silent p.G362G 0.23 TCGA-FR-A8YC-06 5 179393961 179393961 G A RNF130 Missense_Mutation p.T332I 0.39 tolerated(0.44) benign(0.296) TCGA-FR-A8YC-06 5 180166481 180166481 C T OR2Y1 Missense_Mutation p.G193E 0.23 tolerated(0.28) benign(0.033) TCGA-FR-A8YC-06 5 180335690 180335690 G A BTNL8 Missense_Mutation p.E52K 0.47 deleterious(0.02) probably_damaging(0.992) TCGA-FR-A8YC-06 5 180376990 180376990 G C BTNL8 Missense_Mutation p.E317Q 0.45 tolerated(0.51) benign(0.122) TCGA-FR-A8YC-06 5 180377271 180377271 C T BTNL8 Silent p.F410F 0.43 TCGA-FR-A8YC-06 5 19473751 19473751 C T CDH18 Missense_Mutation p.E653K 0.41 deleterious(0) possibly_damaging(0.484) TCGA-FR-A8YC-06 5 195292 195292 G A LRRC14B Missense_Mutation p.E457K 0.23 deleterious(0.01) benign(0.392) TCGA-FR-A8YC-06 5 19571827 19571828 TC G CDH18 Frame_Shift_Del p.K371Nfs*7 0.27 TCGA-FR-A8YC-06 5 21752064 21752064 C T CDH12 Missense_Mutation p.E723K 0.37 deleterious(0) possibly_damaging(0.751) TCGA-FR-A8YC-06 5 23522420 23522420 G A PRDM9 Silent p.R172R 0.21 TCGA-FR-A8YC-06 5 23524482 23524482 G A PRDM9 Silent p.L330L 0.31 TCGA-FR-A8YC-06 5 23524483 23524483 G A PRDM9 Missense_Mutation p.V331M 0.32 deleterious(0) possibly_damaging(0.54) TCGA-FR-A8YC-06 5 23526703 23526703 G A PRDM9 Silent p.Q502Q 0.46 TCGA-FR-A8YC-06 5 23527702 23527702 G A PRDM9 Silent p.R835R 0.18 TCGA-FR-A8YC-06 5 24492972 24492972 G A CDH10 Silent p.F526F 0.37 TCGA-FR-A8YC-06 5 26885786 26885786 G T CDH9 Missense_Mutation p.L607I 0.14 deleterious(0.05) benign(0.197) TCGA-FR-A8YC-06 5 26915831 26915831 C T CDH9 Missense_Mutation p.E144K 0.46 deleterious(0) benign(0.074) TCGA-FR-A8YC-06 5 2749668 2749672 GACCT - IRX2 Frame_Shift_Del p.Q160Lfs*28 0.41 TCGA-FR-A8YC-06 5 31995809 31995809 G A PDZD2 Missense_Mutation p.G369E 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 5 32073946 32073946 G A PDZD2 Missense_Mutation p.E912K 0.25 deleterious(0.02) benign(0.085) TCGA-FR-A8YC-06 5 32074530 32074530 C T PDZD2 Silent p.S1106S 0.20 TCGA-FR-A8YC-06 5 35667290 35667290 A T SPEF2 Silent p.V428V 0.33 TCGA-FR-A8YC-06 5 36039649 36039649 A G UGT3A2 Silent p.H335H 0.40 TCGA-FR-A8YC-06 5 36141296 36141296 G A LMBRD2 Missense_Mutation p.P94L 0.40 tolerated(0.32) benign(0.002) TCGA-FR-A8YC-06 5 36608587 36608587 G A SLC1A3 Missense_Mutation p.G21E 0.42 deleterious(0.01) benign(0.356) TCGA-FR-A8YC-06 5 37697756 37697756 G A WDR70 Splice_Site p.X365_splice 0.19 TCGA-FR-A8YC-06 5 38451558 38451558 C T EGFLAM Silent p.F903F 0.19 TCGA-FR-A8YC-06 5 38458419 38458419 C T EGFLAM Silent p.N906N 0.12 TCGA-FR-A8YC-06 5 38881758 38881758 C T OSMR Missense_Mutation p.P104S 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 5 38904063 38904063 C T OSMR Silent p.S357S 0.39 TCGA-FR-A8YC-06 5 40835322 40835322 G A RPL37 5'UTR 0.54 TCGA-FR-A8YC-06 5 40843344 40843344 C T CARD6 Missense_Mutation p.P125L 0.22 tolerated(0.07) benign(0.092) TCGA-FR-A8YC-06 5 40955515 40955515 G A C7 Missense_Mutation p.E374K 0.43 tolerated(0.99) benign(0.001) TCGA-FR-A8YC-06 5 40955600 40955600 G A C7 Missense_Mutation p.R402Q 0.37 tolerated(0.09) benign(0.135) TCGA-FR-A8YC-06 5 41018502 41018502 C T MROH2B Missense_Mutation p.E902K 0.22 deleterious(0.04) benign(0.255) TCGA-FR-A8YC-06 5 41019072 41019072 C T MROH2B Silent p.E830E 0.31 TCGA-FR-A8YC-06 5 41047862 41047862 C T MROH2B Silent p.K563K 0.79 TCGA-FR-A8YC-06 5 41064657 41064657 G A MROH2B Missense_Mutation p.P126L 0.21 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 5 41142947 41142947 G A C6 Missense_Mutation p.P929S 0.12 tolerated(0.34) benign(0.003) TCGA-FR-A8YC-06 5 41142995 41142995 C T C6 Missense_Mutation p.E913K 0.36 tolerated(0.91) benign(0.005) TCGA-FR-A8YC-06 5 41160322 41160322 C T C6 Missense_Mutation p.G536R 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A8YC-06 5 41161958 41161958 G A C6 Missense_Mutation p.S432L 0.54 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 5 45262409 45262409 G A HCN1 Missense_Mutation p.P763S 0.38 tolerated_low_confidence(0.16) benign(0.018) TCGA-FR-A8YC-06 5 45645514 45645514 G A HCN1 Silent p.L208L 0.40 TCGA-FR-A8YC-06 5 462156 462156 C T EXOC3 Silent p.I491I 0.23 TCGA-FR-A8YC-06 5 52778857 52778857 G A FST Nonsense_Mutation p.W78* 0.17 TCGA-FR-A8YC-06 5 52954438 52954438 C T NDUFS4 Silent p.S136S 0.22 TCGA-FR-A8YC-06 5 54320512 54320512 G A GZMK Missense_Mutation p.G30E 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 5 54401352 54401352 C T GZMA Missense_Mutation p.P41S 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-FR-A8YC-06 5 54439387 54439387 T C CDC20B Missense_Mutation p.H147R 0.15 tolerated(0.34) benign(0.003) TCGA-FR-A8YC-06 5 55077770 55077770 G A DDX4 Missense_Mutation p.D196N 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-FR-A8YC-06 5 55212695 55212695 C T IL31RA Missense_Mutation p.P681L 0.18 tolerated(0.12) benign(0.076) TCGA-FR-A8YC-06 5 55407169 55407169 C T ANKRD55 Missense_Mutation p.R469Q 0.15 tolerated_low_confidence(0.08) benign(0.003) TCGA-FR-A8YC-06 5 59284448 59284448 G A PDE4D Nonsense_Mutation p.Q47* 0.40 TCGA-FR-A8YC-06 5 64483963 64483963 G A ADAMTS6 Silent p.I930I 0.20 TCGA-FR-A8YC-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.19 TCGA-FR-A8YC-06 5 66481818 66481818 C T CD180 Missense_Mutation p.E40K 0.15 deleterious(0.04) possibly_damaging(0.486) TCGA-FR-A8YC-06 5 68830548 68830548 G A OCLN Missense_Mutation p.D307N 0.22 tolerated(0.47) benign(0.285) TCGA-FR-A8YC-06 5 71014994 71014994 G A CARTPT 5'UTR 0.67 TCGA-FR-A8YC-06 5 72419330 72419330 T C TMEM171 Missense_Mutation p.F44L 0.20 tolerated(0.31) possibly_damaging(0.641) TCGA-FR-A8YC-06 5 74077775 74077775 C T FAM169A Missense_Mutation p.G508E 0.07 tolerated(1) benign(0.005) TCGA-FR-A8YC-06 5 75427786 75427786 G A SV2C Missense_Mutation p.D71N 0.38 tolerated(0.23) benign(0.001) TCGA-FR-A8YC-06 5 75919104 75919104 C T F2RL2 5'UTR 0.45 TCGA-FR-A8YC-06 5 75969825 75969825 G A IQGAP2 Silent p.E1086E 0.35 TCGA-FR-A8YC-06 5 76003187 76003187 G A IQGAP2 3'UTR 0.41 TCGA-FR-A8YC-06 5 76129647 76129647 G A F2RL1 3'UTR 0.48 TCGA-FR-A8YC-06 5 7712968 7712968 G T ADCY2 Splice_Site p.X527_splice 0.39 TCGA-FR-A8YC-06 5 78340328 78340328 G A DMGDH Missense_Mutation p.L265F 0.22 deleterious(0.02) possibly_damaging(0.517) TCGA-FR-A8YC-06 5 79033065 79033065 C T CMYA5 Missense_Mutation p.P2826L 0.17 benign(0.018) TCGA-FR-A8YC-06 5 79854847 79854847 C T ANKRD34B Missense_Mutation p.G331E 0.21 tolerated(1) benign(0.015) TCGA-FR-A8YC-06 5 86695289 86695289 G A CCNH Missense_Mutation p.P265L 0.41 tolerated(0.11) benign(0.29) TCGA-FR-A8YC-06 5 89920992 89920992 A G GPR98 Missense_Mutation p.K202E 0.19 benign(0.099) TCGA-FR-A8YC-06 5 89981719 89981719 C T GPR98 Missense_Mutation p.H2133Y 0.48 probably_damaging(0.932) TCGA-FR-A8YC-06 5 90015978 90015978 G A GPR98 Silent p.L3187L 0.41 TCGA-FR-A8YC-06 5 90077275 90077275 G A GPR98 Missense_Mutation p.G4371R 0.38 probably_damaging(0.979) TCGA-FR-A8YC-06 5 90084061 90084061 T A GPR98 Silent p.I4609I 0.49 TCGA-FR-A8YC-06 5 9154708 9154708 G A SEMA5A Missense_Mutation p.P458L 0.38 deleterious(0) possibly_damaging(0.606) TCGA-FR-A8YC-06 5 94248576 94248576 C T MCTP1 Missense_Mutation p.D486N 0.20 tolerated(0.06) probably_damaging(1) TCGA-FR-A8YC-06 5 96478349 96478349 G A LIX1 5'UTR 0.17 TCGA-FR-A8YC-06 6 100395722 100395722 C T MCHR2 Missense_Mutation p.G103E 0.42 tolerated(0.74) possibly_damaging(0.672) TCGA-FR-A8YC-06 6 100838625 100838625 C T SIM1 Missense_Mutation p.G638E 0.20 tolerated_low_confidence(0.2) benign(0.339) TCGA-FR-A8YC-06 6 100895167 100895167 G A SIM1 Silent p.I325I 0.21 TCGA-FR-A8YC-06 6 102376441 102376441 T C GRIK2 Silent p.D673D 0.38 TCGA-FR-A8YC-06 6 105526589 105526589 G A LIN28B Silent p.T228T 0.42 TCGA-FR-A8YC-06 6 107232090 107232090 C T MIR587 RNA 0.40 TCGA-FR-A8YC-06 6 10791915 10791915 G A MAK Missense_Mutation p.P437S 0.12 tolerated(0.79) benign(0.002) TCGA-FR-A8YC-06 6 109415123 109415123 C T SESN1 Missense_Mutation p.G52R 0.15 tolerated_low_confidence(0.19) benign(0.011) TCGA-FR-A8YC-06 6 10961599 10961599 G A SYCP2L Missense_Mutation p.D773N 0.52 deleterious(0.02) benign(0.415) TCGA-FR-A8YC-06 6 109748351 109748351 G A PPIL6 Silent p.F143F 0.36 TCGA-FR-A8YC-06 6 110424741 110424741 G A WASF1 Missense_Mutation p.H245Y 0.54 tolerated(0.24) unknown(0) TCGA-FR-A8YC-06 6 110551158 110551158 T C CDC40 Missense_Mutation p.Y522H 0.36 deleterious(0) possibly_damaging(0.872) TCGA-FR-A8YC-06 6 110714005 110714005 C T DDO Silent p.R361R 0.25 TCGA-FR-A8YC-06 6 110746278 110746278 C T SLC22A16 Missense_Mutation p.G511E 0.36 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 6 110777608 110777608 C T SLC22A16 Intron 0.41 TCGA-FR-A8YC-06 6 110777617 110777617 G A SLC22A16 Intron 0.43 TCGA-FR-A8YC-06 6 111540225 111540225 C T SLC16A10 Missense_Mutation p.T432I 0.24 tolerated(0.23) possibly_damaging(0.479) TCGA-FR-A8YC-06 6 112386028 112386028 C T WISP3 Silent p.P157P 0.28 TCGA-FR-A8YC-06 6 112510400 112510400 G A LAMA4 Silent p.N242N 0.39 TCGA-FR-A8YC-06 6 114379170 114379170 C T HS3ST5 Missense_Mutation p.V98M 0.24 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 6 116579912 116579912 C T TSPYL4 5'Flank 0.52 TCGA-FR-A8YC-06 6 116720452 116720452 C T DSE Silent p.F13F 0.30 TCGA-FR-A8YC-06 6 116757549 116757549 C T DSE Missense_Mutation p.P640S 0.46 tolerated(0.07) benign(0.147) TCGA-FR-A8YC-06 6 117662788 117662788 C T ROS1 Silent p.E1559E 0.42 TCGA-FR-A8YC-06 6 117683963 117683963 C T ROS1 Missense_Mutation p.E1062K 0.49 tolerated(0.9) benign(0.026) TCGA-FR-A8YC-06 6 119283113 119283113 C T FAM184A Missense_Mutation p.D1052N 0.50 tolerated(0.21) benign(0.037) TCGA-FR-A8YC-06 6 119338037 119338037 C T FAM184A Missense_Mutation p.E469K 0.27 tolerated(0.16) possibly_damaging(0.58) TCGA-FR-A8YC-06 6 119510893 119510893 G A MAN1A1 Silent p.A494A 0.32 TCGA-FR-A8YC-06 6 119569520 119569520 C T MAN1A1 Splice_Site p.X300_splice 0.24 TCGA-FR-A8YC-06 6 12123605 12123605 C T HIVEP1 Missense_Mutation p.P1193S 0.23 tolerated(0.34) benign(0.15) TCGA-FR-A8YC-06 6 121427203 121427203 G A TBC1D32 Missense_Mutation p.S1144L 0.48 deleterious(0) possibly_damaging(0.897) TCGA-FR-A8YC-06 6 125232230 125232230 G A RP11-510H23.1 RNA 0.45 TCGA-FR-A8YC-06 6 125569436 125569436 A T TPD52L1 Missense_Mutation p.K98I 0.12 deleterious(0) possibly_damaging(0.514) TCGA-FR-A8YC-06 6 128134733 128134733 C T THEMIS Silent p.T351T 0.35 TCGA-FR-A8YC-06 6 128291269 128291269 C T PTPRK 3'UTR 0.12 TCGA-FR-A8YC-06 6 128326313 128326313 G A PTPRK Nonsense_Mutation p.R804* 0.59 TCGA-FR-A8YC-06 6 128330295 128330295 G A PTPRK Silent p.V771V 0.21 TCGA-FR-A8YC-06 6 128388821 128388821 G A PTPRK Missense_Mutation p.P667L 0.39 tolerated(0.34) possibly_damaging(0.784) TCGA-FR-A8YC-06 6 128505667 128505667 C T PTPRK Missense_Mutation p.E358K 0.35 deleterious(0.01) probably_damaging(0.975) TCGA-FR-A8YC-06 6 129511366 129511366 G A LAMA2 Missense_Mutation p.G495E 0.30 tolerated(1) benign(0.004) TCGA-FR-A8YC-06 6 129835566 129835566 G A LAMA2 Missense_Mutation p.D3013N 0.50 tolerated(0.12) benign(0.007) TCGA-FR-A8YC-06 6 130399773 130399773 C T L3MBTL3 Missense_Mutation p.P439S 0.44 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 6 130535528 130535528 T A SAMD3 Missense_Mutation p.N75Y 0.49 tolerated_low_confidence(1) benign(0) TCGA-FR-A8YC-06 6 130762234 130762234 G A TMEM200A Missense_Mutation p.D223N 0.31 tolerated(0.49) benign(0.002) TCGA-FR-A8YC-06 6 130763088 130763088 G A TMEM200A 3'UTR 0.47 TCGA-FR-A8YC-06 6 131602895 131602895 T G AKAP7 3'UTR 0.36 TCGA-FR-A8YC-06 6 131997937 131997937 G A ENPP3 Missense_Mutation p.E312K 0.27 tolerated(0.14) benign(0.12) TCGA-FR-A8YC-06 6 132021840 132021840 C T OR2A4 Silent p.R234R 0.24 TCGA-FR-A8YC-06 6 132030174 132030174 C T CTAGE9 Missense_Mutation p.E662K 0.68 deleterious(0.05) benign(0.391) TCGA-FR-A8YC-06 6 132047291 132047291 G A ENPP3 Missense_Mutation p.G635E 0.21 deleterious(0) possibly_damaging(0.595) TCGA-FR-A8YC-06 6 132891670 132891670 C T TAAR6 Silent p.L70L 0.25 TCGA-FR-A8YC-06 6 132892294 132892294 A G TAAR6 Silent p.S278S 0.16 TCGA-FR-A8YC-06 6 132966432 132966432 C T TAAR1 Missense_Mutation p.M237I 0.33 tolerated(0.2) benign(0.011) TCGA-FR-A8YC-06 6 133836552 133836552 C T EYA4 Missense_Mutation p.S532F 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-FR-A8YC-06 6 133849990 133849990 G A EYA4 3'UTR 0.28 TCGA-FR-A8YC-06 6 135520104 135520104 C T MYB Missense_Mutation p.S542F 0.30 deleterious(0) possibly_damaging(0.721) TCGA-FR-A8YC-06 6 136582499 136582499 C T BCLAF1 Nonsense_Mutation p.W887* 0.23 TCGA-FR-A8YC-06 6 136597105 136597105 C T BCLAF1 Missense_Mutation p.D520N 0.24 tolerated(0.12) possibly_damaging(0.728) TCGA-FR-A8YC-06 6 136597507 136597507 C T BCLAF1 Missense_Mutation p.D386N 0.17 deleterious(0.05) possibly_damaging(0.728) TCGA-FR-A8YC-06 6 136599211 136599211 C T BCLAF1 Missense_Mutation p.E270K 0.34 deleterious(0.02) possibly_damaging(0.486) TCGA-FR-A8YC-06 6 136709567 136709567 C T MAP7 Missense_Mutation p.G186S 0.33 deleterious(0.03) possibly_damaging(0.677) TCGA-FR-A8YC-06 6 137245776 137245776 G A SLC35D3 Missense_Mutation p.G398E 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.51) TCGA-FR-A8YC-06 6 137322612 137322612 C T IL20RA 3'UTR 0.46 TCGA-FR-A8YC-06 6 137466628 137466628 C T IL22RA2 3'UTR 0.56 TCGA-FR-A8YC-06 6 137527354 137527354 G A IFNGR1 Missense_Mutation p.L98F 0.24 tolerated(0.1) benign(0.339) TCGA-FR-A8YC-06 6 143094458 143094458 T A HIVEP2 Missense_Mutation p.D473V 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-FR-A8YC-06 6 144757135 144757135 T C UTRN Missense_Mutation p.V307A 0.24 tolerated(0.6) benign(0.004) TCGA-FR-A8YC-06 6 146350808 146350808 C T GRM1 Missense_Mutation p.S52L 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-FR-A8YC-06 6 149285771 149285771 A T UST Intron 0.20 TCGA-FR-A8YC-06 6 149340313 149340313 C T UST Silent p.C240C 0.52 TCGA-FR-A8YC-06 6 150690264 150690264 G A IYD Missense_Mutation p.E33K 0.32 tolerated(0.22) benign(0.009) TCGA-FR-A8YC-06 6 152443784 152443784 G A SYNE1 Silent p.S8727S 0.50 TCGA-FR-A8YC-06 6 152861094 152861094 C T SYNE1 Splice_Site p.X43_splice 0.25 TCGA-FR-A8YC-06 6 155451292 155451292 C T TIAM2 Missense_Mutation p.S312F 0.50 tolerated(0.79) benign(0.001) TCGA-FR-A8YC-06 6 157528346 157528346 C G ARID1B Missense_Mutation p.T2024R 0.53 probably_damaging(0.998) TCGA-FR-A8YC-06 6 158449941 158449941 T - SYNJ2 Frame_Shift_Del p.I123Tfs*20 0.12 TCGA-FR-A8YC-06 6 158924519 158924519 C T TULP4 Missense_Mutation p.P1275L 0.24 deleterious_low_confidence(0.04) benign(0.02) TCGA-FR-A8YC-06 6 159263063 159263063 C T OSTCP1 RNA 0.35 TCGA-FR-A8YC-06 6 159650859 159650859 C T FNDC1 Missense_Mutation p.S398L 0.43 deleterious(0) unknown(0) TCGA-FR-A8YC-06 6 160189594 160189594 C T ACAT2 Silent p.L142L 0.36 TCGA-FR-A8YC-06 6 160557636 160557636 C T SLC22A1 Missense_Mutation p.R339C 0.27 deleterious(0) benign(0.351) TCGA-FR-A8YC-06 6 160645792 160645792 C T SLC22A2 Missense_Mutation p.E516K 0.15 deleterious(0) probably_damaging(0.936) TCGA-FR-A8YC-06 6 161137681 161137681 C T PLG Missense_Mutation p.P225S 0.52 deleterious(0.02) possibly_damaging(0.453) TCGA-FR-A8YC-06 6 161157998 161157998 C T PLG Silent p.A587A 0.36 TCGA-FR-A8YC-06 6 161807857 161807857 G A PARK2 Missense_Mutation p.A379V 0.38 tolerated(0.22) benign(0.014) TCGA-FR-A8YC-06 6 166571696 166571696 C T T 3'UTR 0.39 TCGA-FR-A8YC-06 6 166571782 166571782 C T T 3'UTR 0.36 TCGA-FR-A8YC-06 6 169632099 169632099 G A THBS2 Silent p.T709T 0.33 TCGA-FR-A8YC-06 6 170156440 170156440 C T ERMARD Missense_Mutation p.P108S 0.44 tolerated(0.44) benign(0.367) TCGA-FR-A8YC-06 6 170179295 170179295 C T ERMARD Missense_Mutation p.P586L 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-FR-A8YC-06 6 1742737 1742737 G A GMDS Silent p.V285V 0.11 TCGA-FR-A8YC-06 6 20488423 20488423 C T E2F3 Missense_Mutation p.P360L 0.24 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 6 24146028 24146028 A T NRSN1 Nonsense_Mutation p.K148* 0.45 TCGA-FR-A8YC-06 6 24146100 24146100 C T NRSN1 Missense_Mutation p.P172S 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-FR-A8YC-06 6 24563698 24563698 C T KIAA0319 Missense_Mutation p.G827E 0.30 tolerated(0.09) benign(0.065) TCGA-FR-A8YC-06 6 25689400 25689400 G A SCGN Silent p.R176R 0.11 TCGA-FR-A8YC-06 6 25862469 25862469 G A SLC17A3 Missense_Mutation p.P99S 0.42 tolerated(0.43) benign(0.001) TCGA-FR-A8YC-06 6 26234566 26234566 T C HIST1H1D Missense_Mutation p.K199R 0.21 tolerated(0.22) unknown(0) TCGA-FR-A8YC-06 6 26271349 26271349 G A HIST1H3G Silent p.S88S 0.11 TCGA-FR-A8YC-06 6 26271350 26271350 G A HIST1H3G Missense_Mutation p.S88F 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FR-A8YC-06 6 26385580 26385580 C T BTN2A2 Silent p.L144L 0.23 TCGA-FR-A8YC-06 6 26409763 26409763 C T BTN3A1 Missense_Mutation p.P240S 0.35 tolerated(0.37) possibly_damaging(0.742) TCGA-FR-A8YC-06 6 27223114 27223114 C T PRSS16 3'UTR 0.40 TCGA-FR-A8YC-06 6 27368928 27368928 G T ZNF391 Missense_Mutation p.W260L 0.17 tolerated(0.65) possibly_damaging(0.895) TCGA-FR-A8YC-06 6 27925897 27925897 G A OR2B6 Silent p.R293R 0.29 TCGA-FR-A8YC-06 6 28094699 28094699 G A ZSCAN16 Missense_Mutation p.G176S 0.10 deleterious(0.05) probably_damaging(0.998) TCGA-FR-A8YC-06 6 28269727 28269727 C T PGBD1 Missense_Mutation p.S699F 0.20 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 6 28500104 28500104 C T GPX5 Silent p.V122V 0.23 TCGA-FR-A8YC-06 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.39 tolerated_low_confidence(0.09) benign(0.04) TCGA-FR-A8YC-06 6 28543032 28543032 A G SCAND3 Missense_Mutation p.F484L 0.19 tolerated_low_confidence(0.72) benign(0) TCGA-FR-A8YC-06 6 2892222 2892222 C T SERPINB9 Missense_Mutation p.E190K 0.36 tolerated(0.9) benign(0.002) TCGA-FR-A8YC-06 6 2893700 2893700 C T SERPINB9 Nonsense_Mutation p.W171* 0.27 TCGA-FR-A8YC-06 6 29012659 29012659 G A OR2W1 Silent p.I98I 0.23 TCGA-FR-A8YC-06 6 29012822 29012822 G A OR2W1 Missense_Mutation p.A44V 0.59 tolerated(0.15) possibly_damaging(0.543) TCGA-FR-A8YC-06 6 29054492 29054492 G A OR2B3 Silent p.F178F 0.28 TCGA-FR-A8YC-06 6 29054695 29054695 C T OR2B3 Missense_Mutation p.E111K 0.38 deleterious(0.01) possibly_damaging(0.488) TCGA-FR-A8YC-06 6 29055002 29055002 G A OR2B3 Silent p.S8S 0.13 TCGA-FR-A8YC-06 6 29274702 29274702 C T OR14J1 Missense_Mutation p.S79F 0.50 tolerated(0.11) possibly_damaging(0.594) TCGA-FR-A8YC-06 6 29342748 29342748 C T OR12D3 Missense_Mutation p.G106E 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-FR-A8YC-06 6 29429520 29429520 C T OR2H1 5'UTR 0.15 TCGA-FR-A8YC-06 6 29430425 29430425 G A OR2H1 Silent p.K293K 0.17 TCGA-FR-A8YC-06 6 29691179 29691179 G A HLA-F 5'Flank 0.21 TCGA-FR-A8YC-06 6 30679248 30679248 G A MDC1 Missense_Mutation p.A721V 0.40 tolerated(0.13) probably_damaging(0.968) TCGA-FR-A8YC-06 6 31132644 31132644 C T POU5F1 Missense_Mutation p.V273M 0.38 tolerated(0.08) benign(0.019) TCGA-FR-A8YC-06 6 31526047 31526047 C T NFKBIL1 Silent p.L269L 0.29 TCGA-FR-A8YC-06 6 31541155 31541155 C T LTA Silent p.V101V 0.15 TCGA-FR-A8YC-06 6 31599432 31599432 C T PRRC2A Silent p.P994P 0.25 TCGA-FR-A8YC-06 6 31610642 31610642 G A BAG6 Silent p.V639V 0.23 TCGA-FR-A8YC-06 6 31619440 31619440 C G BAG6 Missense_Mutation p.G34A 0.23 tolerated(0.4) benign(0.359) TCGA-FR-A8YC-06 6 31637197 31637197 G T CSNK2B-LY6G5B-1181 Missense_Mutation p.A157S 0.39 tolerated(0.06) possibly_damaging(0.57) TCGA-FR-A8YC-06 6 31683182 31683182 C T LY6G6D Missense_Mutation p.A17V 0.11 tolerated(0.12) benign(0.001) TCGA-FR-A8YC-06 6 31691971 31691971 C T C6orf25 Silent p.L154L 0.18 TCGA-FR-A8YC-06 6 31711731 31711731 C T MSH5 Missense_Mutation p.P156S 0.24 tolerated(0.09) benign(0.31) TCGA-FR-A8YC-06 6 31735026 31735026 G A VWA7 Silent p.A597A 0.42 TCGA-FR-A8YC-06 6 31926938 31926938 C T SKIV2L 5'UTR 0.53 TCGA-FR-A8YC-06 6 31939375 31939375 T A DXO Silent p.A26A 0.21 TCGA-FR-A8YC-06 6 32029219 32029219 G A TNXB Missense_Mutation p.H2483Y 0.21 probably_damaging(0.922) TCGA-FR-A8YC-06 6 32035711 32035711 C T TNXB Missense_Mutation p.E2091K 0.46 benign(0.39) TCGA-FR-A8YC-06 6 32155505 32155505 G T PBX2 Missense_Mutation p.F263L 0.58 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A8YC-06 6 32168970 32168970 G A NOTCH4 Missense_Mutation p.R1355W 0.56 tolerated(0.19) benign(0.002) TCGA-FR-A8YC-06 6 32261287 32261287 G A C6orf10 Missense_Mutation p.S388F 0.37 deleterious(0.01) possibly_damaging(0.857) TCGA-FR-A8YC-06 6 32548563 32548563 G A HLA-DRB1 Silent p.F241F 0.10 TCGA-FR-A8YC-06 6 32798042 32798042 A G TAP2 Splice_Site p.X545_splice 0.37 TCGA-FR-A8YC-06 6 32847480 32847480 G A PPP1R2P1 RNA 0.13 TCGA-FR-A8YC-06 6 32847482 32847482 T A PPP1R2P1 RNA 0.66 TCGA-FR-A8YC-06 6 32946001 32946001 G A BRD2 Silent p.K559K 0.47 TCGA-FR-A8YC-06 6 33237527 33237527 G A VPS52 Missense_Mutation p.R100W 0.55 deleterious(0) probably_damaging(0.948) TCGA-FR-A8YC-06 6 33385061 33385061 G A CUTA Missense_Mutation p.A114V 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 6 33654279 33654279 C T ITPR3 Silent p.L1988L 0.56 TCGA-FR-A8YC-06 6 350981 350981 C T DUSP22 3'UTR 0.33 TCGA-FR-A8YC-06 6 36103572 36103572 C T MAPK13 Silent p.I117I 0.33 TCGA-FR-A8YC-06 6 36884325 36884325 A C C6orf89 Missense_Mutation p.H274P 0.31 tolerated(0.07) benign(0.014) TCGA-FR-A8YC-06 6 38794087 38794087 G A DNAH8 Missense_Mutation p.D1118N 0.24 probably_damaging(0.979) TCGA-FR-A8YC-06 6 38821098 38821098 C T DNAH8 Missense_Mutation p.P1686L 0.31 benign(0.001) TCGA-FR-A8YC-06 6 39159101 39159101 C T KCNK5 Silent p.L355L 0.20 TCGA-FR-A8YC-06 6 39267324 39267324 C T KCNK17 Missense_Mutation p.G293E 0.44 tolerated(0.23) benign(0.013) TCGA-FR-A8YC-06 6 39507841 39507841 G A KIF6 Missense_Mutation p.P528L 0.49 tolerated(0.6) benign(0.001) TCGA-FR-A8YC-06 6 4099417 4099417 C T C6orf201 Missense_Mutation p.S90F 0.42 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 6 41002498 41002498 G A UNC5CL Nonsense_Mutation p.R106* 0.22 TCGA-FR-A8YC-06 6 41011825 41011825 G A TSPO2 Silent p.R154R 0.31 TCGA-FR-A8YC-06 6 41057945 41057945 A T NFYA Silent p.T148T 0.21 TCGA-FR-A8YC-06 6 4128059 4128059 G A ECI2 Missense_Mutation p.H170Y 0.60 deleterious(0.03) benign(0.061) TCGA-FR-A8YC-06 6 41309610 41309610 C T NCR2 Missense_Mutation p.P158L 0.55 deleterious(0.01) possibly_damaging(0.471) TCGA-FR-A8YC-06 6 41712502 41712502 T A PGC Missense_Mutation p.E35V 0.27 deleterious(0) probably_damaging(0.928) TCGA-FR-A8YC-06 6 42200546 42200546 G A TRERF1 Missense_Mutation p.P1051S 0.21 tolerated(0.05) possibly_damaging(0.641) TCGA-FR-A8YC-06 6 42902238 42902238 G A CNPY3 Silent p.L59L 0.20 TCGA-FR-A8YC-06 6 43183896 43183896 C T CUL9 Silent p.S1979S 0.28 TCGA-FR-A8YC-06 6 43222323 43222323 G A TTBK1 Silent p.R170R 0.33 TCGA-FR-A8YC-06 6 43403961 43403961 C T ABCC10 Silent p.F617F 0.55 TCGA-FR-A8YC-06 6 43412593 43412593 C T ABCC10 Silent p.S919S 0.38 TCGA-FR-A8YC-06 6 43413519 43413519 G A ABCC10 Silent p.L1071L 0.35 TCGA-FR-A8YC-06 6 43415613 43415613 C T ABCC10 Silent p.P1299P 0.43 TCGA-FR-A8YC-06 6 44222769 44222769 G A SLC35B2 Silent p.L325L 0.53 TCGA-FR-A8YC-06 6 46967964 46967964 C T GPR110 Missense_Mutation p.E910K 0.27 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-FR-A8YC-06 6 46993677 46993677 C T GPR110 Missense_Mutation p.D64N 0.40 tolerated(0.45) benign(0.002) TCGA-FR-A8YC-06 6 49753787 49753787 C T PGK2 Missense_Mutation p.G372R 0.39 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 6 49754072 49754072 C T PGK2 Missense_Mutation p.G277S 0.17 tolerated(0.06) benign(0.069) TCGA-FR-A8YC-06 6 49803076 49803076 T A CRISP1 Missense_Mutation p.I235F 0.38 deleterious(0.03) benign(0.022) TCGA-FR-A8YC-06 6 49815974 49815974 A T CRISP1 Missense_Mutation p.F78L 0.29 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 6 4996482 4996482 G A RPP40 Silent p.L244L 0.29 TCGA-FR-A8YC-06 6 49986799 49986799 C T DEFB110 Missense_Mutation p.R32K 0.31 tolerated(0.24) benign(0.066) TCGA-FR-A8YC-06 6 50811110 50811110 T C TFAP2B 3'UTR 0.41 TCGA-FR-A8YC-06 6 51889489 51889489 G A PKHD1 Missense_Mutation p.P1707S 0.32 deleterious(0.03) benign(0.126) TCGA-FR-A8YC-06 6 51920467 51920467 C T PKHD1 Missense_Mutation p.R585K 0.36 deleterious(0.02) possibly_damaging(0.562) TCGA-FR-A8YC-06 6 51947236 51947236 C A PKHD1 Missense_Mutation p.V79F 0.23 deleterious(0) probably_damaging(0.914) TCGA-FR-A8YC-06 6 52101641 52101641 G A IL17F 3'UTR 0.32 TCGA-FR-A8YC-06 6 52619870 52619870 C T GSTA2 Missense_Mutation p.G48E 0.41 deleterious(0.04) possibly_damaging(0.562) TCGA-FR-A8YC-06 6 52878544 52878544 G A ICK Silent p.S356S 0.47 TCGA-FR-A8YC-06 6 52992988 52992988 T A GCM1 3'UTR 0.33 TCGA-FR-A8YC-06 6 54185403 54185403 G A TINAG Missense_Mutation p.E128K 0.32 tolerated(0.4) benign(0.006) TCGA-FR-A8YC-06 6 54804719 54804719 C T FAM83B Missense_Mutation p.S317F 0.29 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 6 5545496 5545496 C T FARS2 Missense_Mutation p.R330C 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 6 55739291 55739291 G A BMP5 Missense_Mutation p.R125C 0.41 deleterious(0.03) possibly_damaging(0.766) TCGA-FR-A8YC-06 6 56047454 56047454 C T COL21A1 Intron 0.33 TCGA-FR-A8YC-06 6 56471361 56471361 G A DST Intron 0.26 TCGA-FR-A8YC-06 6 56880062 56880062 T A BEND6 Missense_Mutation p.F144I 0.49 tolerated_low_confidence(0.23) possibly_damaging(0.879) TCGA-FR-A8YC-06 6 62688034 62688034 T G KHDRBS2 Silent p.P140P 0.55 TCGA-FR-A8YC-06 6 63990359 63990359 C T LGSN Missense_Mutation p.R366Q 0.48 tolerated(0.09) possibly_damaging(0.608) TCGA-FR-A8YC-06 6 66053984 66053984 C T EYS Missense_Mutation p.D516N 0.24 tolerated(0.5) benign(0) TCGA-FR-A8YC-06 6 70098708 70098708 G A BAI3 Silent p.L1498L 0.22 TCGA-FR-A8YC-06 6 70778326 70778326 G A COL19A1 Silent p.G394G 0.28 TCGA-FR-A8YC-06 6 70840083 70840083 G A COL19A1 Missense_Mutation p.E451K 0.14 tolerated(0.44) benign(0.065) TCGA-FR-A8YC-06 6 70964860 70964860 C T COL9A1 Missense_Mutation p.G535E 0.33 probably_damaging(1) TCGA-FR-A8YC-06 6 70984475 70984475 C T COL9A1 Missense_Mutation p.G326R 0.21 unknown(0) TCGA-FR-A8YC-06 6 7229613 7229613 C T RREB1 Silent p.L427L 0.18 TCGA-FR-A8YC-06 6 7231545 7231545 C T RREB1 Silent p.I1071I 0.08 TCGA-FR-A8YC-06 6 72957763 72957763 C T RIMS1 Missense_Mutation p.S725F 0.28 deleterious(0) possibly_damaging(0.629) TCGA-FR-A8YC-06 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.35 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 6 73902311 73902311 G A KCNQ5 Missense_Mutation p.G597E 0.43 deleterious(0) possibly_damaging(0.826) TCGA-FR-A8YC-06 6 7580449 7580449 G A DSP Nonsense_Mutation p.W1342* 0.06 TCGA-FR-A8YC-06 6 7585162 7585162 A T DSP Missense_Mutation p.Q2556L 0.15 probably_damaging(0.978) TCGA-FR-A8YC-06 6 76018258 76018258 G A FILIP1 3'UTR 0.36 TCGA-FR-A8YC-06 6 76022919 76022919 C T FILIP1 Missense_Mutation p.E877K 0.39 deleterious(0.01) benign(0.424) TCGA-FR-A8YC-06 6 76576270 76576270 C T MYO6 Missense_Mutation p.H568Y 0.41 tolerated(0.08) unknown(0) TCGA-FR-A8YC-06 6 76640682 76640682 C T IMPG1 Missense_Mutation p.G744E 0.66 tolerated(0.05) possibly_damaging(0.489) TCGA-FR-A8YC-06 6 76660566 76660566 C T IMPG1 Missense_Mutation p.E513K 0.40 tolerated(0.05) benign(0.121) TCGA-FR-A8YC-06 6 76744366 76744366 G A IMPG1 Missense_Mutation p.S147F 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A8YC-06 6 76782276 76782276 G A IMPG1 5'UTR 0.32 TCGA-FR-A8YC-06 6 80197274 80197274 G A LCA5 Missense_Mutation p.S514F 0.54 deleterious(0.02) benign(0.036) TCGA-FR-A8YC-06 6 80721664 80721664 C T TTK Missense_Mutation p.T288I 0.47 tolerated(0.09) benign(0.008) TCGA-FR-A8YC-06 6 81053601 81053601 C T BCKDHB 3'UTR 0.31 TCGA-FR-A8YC-06 6 83888415 83888415 G C PGM3 Missense_Mutation p.R364G 0.54 tolerated(0.08) benign(0.004) TCGA-FR-A8YC-06 6 84061836 84061836 C T ME1 Missense_Mutation p.D129N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YC-06 6 84799156 84799156 G A MRAP2 Missense_Mutation p.E192K 0.24 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 6 87964746 87964746 G T ZNF292 Missense_Mutation p.V467L 0.34 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 6 87969644 87969644 C T ZNF292 Silent p.S2099S 0.45 TCGA-FR-A8YC-06 6 88768493 88768493 C T SPACA1 Missense_Mutation p.P143S 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A8YC-06 6 90402541 90402541 G A MDN1 Missense_Mutation p.S3403F 0.53 possibly_damaging(0.616) TCGA-FR-A8YC-06 6 90604696 90604696 G A GJA10 Missense_Mutation p.G170E 0.25 deleterious(0) probably_damaging(0.984) TCGA-FR-A8YC-06 6 93955046 93955046 G A EPHA7 Missense_Mutation p.S951F 0.39 deleterious(0.02) benign(0.14) TCGA-FR-A8YC-06 6 94066509 94066509 G A EPHA7 Missense_Mutation p.A417V 0.33 deleterious(0) probably_damaging(0.943) TCGA-FR-A8YC-06 6 94120365 94120365 T C EPHA7 Missense_Mutation p.E229G 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-FR-A8YC-06 6 96651218 96651218 G A FUT9 Missense_Mutation p.E63K 0.29 tolerated(0.93) benign(0.03) TCGA-FR-A8YC-06 6 97063626 97063626 C T FHL5 Missense_Mutation p.S278F 0.59 deleterious(0.01) probably_damaging(0.987) TCGA-FR-A8YC-06 6 97247686 97247686 C T GPR63 5'UTR 0.37 TCGA-FR-A8YC-06 6 99857178 99857178 G A PNISR Missense_Mutation p.P182S 0.37 tolerated(0.07) possibly_damaging(0.889) TCGA-FR-A8YC-06 7 100190472 100190472 C T FBXO24 Missense_Mutation p.P247S 0.23 tolerated_low_confidence(0.39) benign(0.003) TCGA-FR-A8YC-06 7 100348378 100348378 G A ZAN Silent p.G460G 0.32 TCGA-FR-A8YC-06 7 100454556 100454556 C T SLC12A9 Missense_Mutation p.S172F 0.49 deleterious(0) benign(0.2) TCGA-FR-A8YC-06 7 100552486 100552486 G A MUC3A Missense_Mutation p.V413I 0.09 tolerated(0.06) possibly_damaging(0.622) TCGA-FR-A8YC-06 7 101256829 101256829 G A MYL10 Missense_Mutation p.P203S 0.50 tolerated(0.06) probably_damaging(0.973) TCGA-FR-A8YC-06 7 102136642 102136642 T C RASA4B Missense_Mutation p.N339S 0.19 deleterious(0.02) possibly_damaging(0.612) TCGA-FR-A8YC-06 7 102815852 102815852 A G DPY19L2P2 RNA 0.33 TCGA-FR-A8YC-06 7 102937898 102937898 C T PMPCB 5'UTR 0.41 TCGA-FR-A8YC-06 7 103019694 103019694 C T SLC26A5 Missense_Mutation p.R558Q 0.40 tolerated(0.58) possibly_damaging(0.537) TCGA-FR-A8YC-06 7 103061988 103061988 C T SLC26A5 5'UTR 0.36 TCGA-FR-A8YC-06 7 103061998 103061998 G C SLC26A5 5'UTR 0.36 TCGA-FR-A8YC-06 7 104748183 104748183 G A KMT2E Silent p.L1093L 0.57 TCGA-FR-A8YC-06 7 104773517 104773517 G A SRPK2 Silent p.P526P 0.39 TCGA-FR-A8YC-06 7 106508837 106508837 G A PIK3CG Silent p.R277R 0.42 TCGA-FR-A8YC-06 7 107423673 107423673 C T SLC26A3 Missense_Mutation p.D366N 0.21 tolerated(0.12) possibly_damaging(0.779) TCGA-FR-A8YC-06 7 107575931 107575931 C T LAMB1 Missense_Mutation p.E1373K 0.42 tolerated(0.48) benign(0.011) TCGA-FR-A8YC-06 7 107575932 107575932 C T LAMB1 Silent p.E1372E 0.42 TCGA-FR-A8YC-06 7 107688476 107688476 C T LAMB4 Silent p.R1401R 0.47 TCGA-FR-A8YC-06 7 107692558 107692558 A - LAMB4 Frame_Shift_Del p.N1301Mfs*46 0.24 TCGA-FR-A8YC-06 7 111407159 111407159 T C DOCK4 Missense_Mutation p.I1273V 0.17 deleterious(0.05) possibly_damaging(0.463) TCGA-FR-A8YC-06 7 111487177 111487177 G A DOCK4 Nonsense_Mutation p.R827* 0.28 TCGA-FR-A8YC-06 7 113558486 113558486 G A PPP1R3A Missense_Mutation p.S189F 0.21 tolerated(0.08) possibly_damaging(0.643) TCGA-FR-A8YC-06 7 11441585 11441585 A T THSD7A Nonsense_Mutation p.Y1416* 0.52 TCGA-FR-A8YC-06 7 11457169 11457169 C T THSD7A Missense_Mutation p.E1149K 0.22 deleterious(0.03) benign(0.241) TCGA-FR-A8YC-06 7 11632983 11632983 C T THSD7A Missense_Mutation p.R390Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 7 116558003 116558003 C T CAPZA2 3'UTR 0.33 TCGA-FR-A8YC-06 7 116859151 116859151 C T ST7 Silent p.I473I 0.49 TCGA-FR-A8YC-06 7 116918399 116918399 G A WNT2 Missense_Mutation p.S298F 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 7 116963078 116963078 C T WNT2 5'UTR 0.30 TCGA-FR-A8YC-06 7 117021063 117021063 A G ASZ1 Splice_Site p.X315_splice 0.38 TCGA-FR-A8YC-06 7 117023133 117023133 G A ASZ1 Missense_Mutation p.P240L 0.33 tolerated(0.62) benign(0.018) TCGA-FR-A8YC-06 7 117243792 117243792 C T CFTR Missense_Mutation p.S955F 0.34 deleterious(0) possibly_damaging(0.656) TCGA-FR-A8YC-06 7 120901755 120901755 T C CPED1 Intron 0.57 TCGA-FR-A8YC-06 7 121652146 121652146 C T PTPRZ1 Missense_Mutation p.L1016F 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.779) TCGA-FR-A8YC-06 7 121942237 121942237 G A FEZF1 Silent p.D414D 0.14 TCGA-FR-A8YC-06 7 122019463 122019463 C T CADPS2 Missense_Mutation p.D1116N 0.23 tolerated(0.12) benign(0.248) TCGA-FR-A8YC-06 7 122078487 122078487 G A CADPS2 Missense_Mutation p.P795L 0.35 deleterious(0.03) benign(0.019) TCGA-FR-A8YC-06 7 122635480 122635480 G A TAS2R16 Missense_Mutation p.S70F 0.52 tolerated(0.74) benign(0.006) TCGA-FR-A8YC-06 7 122787339 122787339 C T SLC13A1 Missense_Mutation p.R229Q 0.50 tolerated(0.14) benign(0.248) TCGA-FR-A8YC-06 7 123119969 123119969 C T IQUB Silent p.R430R 0.37 TCGA-FR-A8YC-06 7 123594255 123594255 C T SPAM1 Missense_Mutation p.R211W 0.45 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 123594569 123594569 C T SPAM1 Silent p.F315F 0.43 TCGA-FR-A8YC-06 7 123599688 123599688 C T SPAM1 Missense_Mutation p.H399Y 0.46 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 7 126173597 126173597 G A GRM8 Silent p.I613I 0.27 TCGA-FR-A8YC-06 7 126542652 126542652 A T GRM8 Missense_Mutation p.F367Y 0.45 deleterious(0) probably_damaging(0.949) TCGA-FR-A8YC-06 7 126746685 126746685 G T GRM8 Missense_Mutation p.P198T 0.17 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 7 127344968 127344968 C T SND1 Missense_Mutation p.R306W 0.51 deleterious(0.02) possibly_damaging(0.849) TCGA-FR-A8YC-06 7 128413708 128413708 T C OPN1SW Missense_Mutation p.K308E 0.47 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 7 128480215 128480215 G T FLNC Splice_Site p.X517_splice 0.44 TCGA-FR-A8YC-06 7 128480889 128480889 C T FLNC Missense_Mutation p.P560S 0.50 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 128494141 128494141 G A FLNC Missense_Mutation p.E2200K 0.20 tolerated(0.16) benign(0) TCGA-FR-A8YC-06 7 128658172 128658172 G A TNPO3 Missense_Mutation p.R54W 0.53 deleterious(0) possibly_damaging(0.462) TCGA-FR-A8YC-06 7 131853284 131853284 G A PLXNA4 Silent p.F1355F 0.40 TCGA-FR-A8YC-06 7 131859659 131859659 C T PLXNA4 Missense_Mutation p.D1299N 0.46 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YC-06 7 131887556 131887556 C T PLXNA4 Missense_Mutation p.G812E 0.39 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YC-06 7 131887557 131887557 C T PLXNA4 Missense_Mutation p.G812R 0.38 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 131982890 131982890 G A PLXNA4 Missense_Mutation p.S488F 0.46 deleterious(0) probably_damaging(0.983) TCGA-FR-A8YC-06 7 133164816 133164816 C T EXOC4 Silent p.S447S 0.21 TCGA-FR-A8YC-06 7 133884067 133884067 A T LRGUK Missense_Mutation p.K547N 0.34 deleterious(0) probably_damaging(0.988) TCGA-FR-A8YC-06 7 134896313 134896313 G A WDR91 5'Flank 0.26 TCGA-FR-A8YC-06 7 136699875 136699875 A C CHRM2 Missense_Mutation p.Y88S 0.23 tolerated(0.07) possibly_damaging(0.474) TCGA-FR-A8YC-06 7 136700135 136700135 G A CHRM2 Missense_Mutation p.E175K 0.46 tolerated(0.06) benign(0.12) TCGA-FR-A8YC-06 7 137172358 137172358 C T DGKI Missense_Mutation p.E794K 0.40 tolerated(0.05) probably_damaging(0.993) TCGA-FR-A8YC-06 7 137266611 137266611 A G DGKI Missense_Mutation p.F543L 0.41 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 7 137600681 137600681 C T CREB3L2 Missense_Mutation p.E133K 0.48 tolerated(0.45) probably_damaging(0.981) TCGA-FR-A8YC-06 7 137798471 137798471 G A AKR1D1 Silent p.K297K 0.15 TCGA-FR-A8YC-06 7 138239644 138239644 C T TRIM24 Missense_Mutation p.P488L 0.10 tolerated(0.17) benign(0.024) TCGA-FR-A8YC-06 7 138268625 138268625 C T TRIM24 Missense_Mutation p.P942S 0.23 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 7 138447085 138447085 C T ATP6V0A4 Missense_Mutation p.G171E 0.27 tolerated(0.06) probably_damaging(1) TCGA-FR-A8YC-06 7 138554417 138554417 G A KIAA1549 Missense_Mutation p.P1548S 0.18 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 140154922 140154922 C T MKRN1 Silent p.Q403Q 0.40 TCGA-FR-A8YC-06 7 140221752 140221752 G A DENND2A Silent p.S938S 0.20 TCGA-FR-A8YC-06 7 141366140 141366140 C T KIAA1147 Missense_Mutation p.R256Q 0.35 tolerated(0.25) benign(0.351) TCGA-FR-A8YC-06 7 141427082 141427082 C T WEE2 Intron 0.35 TCGA-FR-A8YC-06 7 141464361 141464361 T C TAS2R3 Silent p.L135L 0.47 TCGA-FR-A8YC-06 7 141618703 141618703 G A OR9A4 Missense_Mutation p.E10K 0.46 deleterious(0.03) benign(0.011) TCGA-FR-A8YC-06 7 141705356 141705356 T A MGAM Missense_Mutation p.F9Y 0.36 deleterious(0.03) benign(0.006) TCGA-FR-A8YC-06 7 141719028 141719028 G A MGAM Nonsense_Mutation p.W119* 0.38 TCGA-FR-A8YC-06 7 141720819 141720819 G A MGAM Missense_Mutation p.G165E 0.35 deleterious(0.02) possibly_damaging(0.686) TCGA-FR-A8YC-06 7 141724933 141724933 G A MGAM Missense_Mutation p.M322I 0.18 deleterious(0) benign(0.065) TCGA-FR-A8YC-06 7 141752715 141752715 C T MGAM Silent p.F1030F 0.18 TCGA-FR-A8YC-06 7 141755355 141755355 C T MGAM Intron 0.28 TCGA-FR-A8YC-06 7 141951995 141951995 G A PRSS58 3'UTR 0.27 TCGA-FR-A8YC-06 7 142111817 142111817 C T TRBV5-7 Missense_Mutation p.G15R 0.20 tolerated(0.07) benign(0.043) TCGA-FR-A8YC-06 7 142162407 142162407 G A TRBV6-6 5'UTR 0.12 TCGA-FR-A8YC-06 7 142197604 142197604 C T TRBV11-2 RNA 0.29 TCGA-FR-A8YC-06 7 142197742 142197742 C T TRBV11-2 RNA 0.32 TCGA-FR-A8YC-06 7 142223923 142223923 C T TRBV11-1 Missense_Mutation p.D82N 0.23 tolerated(0.09) benign(0.248) TCGA-FR-A8YC-06 7 142232010 142232010 G A TRBV10-1 Missense_Mutation p.L5F 0.48 deleterious(0.03) benign(0.028) TCGA-FR-A8YC-06 7 142247601 142247601 C T TRBV7-3 5'UTR 0.20 TCGA-FR-A8YC-06 7 142428803 142428803 C T TRBV28 Nonsense_Mutation p.R55* 0.25 TCGA-FR-A8YC-06 7 142448650 142448650 C T TRBV29-1 Missense_Mutation p.P82S 0.61 tolerated(0.1) possibly_damaging(0.772) TCGA-FR-A8YC-06 7 142627226 142627226 C T TRPV5 Silent p.L92L 0.25 TCGA-FR-A8YC-06 7 142627446 142627446 C T TRPV5 Missense_Mutation p.R75K 0.50 tolerated(0.23) benign(0.034) TCGA-FR-A8YC-06 7 142637458 142637458 C T C7orf34 Silent p.F76F 0.15 TCGA-FR-A8YC-06 7 142639583 142639583 C T KEL Missense_Mutation p.E659K 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A8YC-06 7 142643351 142643351 C T KEL Silent p.E419E 0.22 TCGA-FR-A8YC-06 7 142643353 142643353 C T KEL Missense_Mutation p.E419K 0.22 tolerated(0.28) benign(0.02) TCGA-FR-A8YC-06 7 142651298 142651298 G A KEL Silent p.F299F 0.24 TCGA-FR-A8YC-06 7 142651433 142651433 C T KEL Silent p.L254L 0.22 TCGA-FR-A8YC-06 7 142655454 142655454 G A KEL Silent p.S154S 0.51 TCGA-FR-A8YC-06 7 142960533 142960533 C A GSTK1 5'Flank 0.53 TCGA-FR-A8YC-06 7 142997486 142997486 C T CASP2 Intron 0.21 TCGA-FR-A8YC-06 7 143095974 143095974 C T EPHA1 Nonsense_Mutation p.W352* 0.50 TCGA-FR-A8YC-06 7 143141092 143141092 G A TAS2R60 Missense_Mutation p.D183N 0.22 tolerated(1) benign(0) TCGA-FR-A8YC-06 7 143657068 143657068 G A OR2F1 Missense_Mutation p.G2E 0.47 tolerated(0.35) benign(0.011) TCGA-FR-A8YC-06 7 143657706 143657706 C T OR2F1 Missense_Mutation p.L215F 0.38 deleterious(0.02) probably_damaging(0.985) TCGA-FR-A8YC-06 7 143657981 143657981 G A OR2F1 Nonsense_Mutation p.W306* 0.50 TCGA-FR-A8YC-06 7 143701774 143701774 C T OR6B1 Missense_Mutation p.P229S 0.40 tolerated(0.07) probably_damaging(0.993) TCGA-FR-A8YC-06 7 143748282 143748282 A G OR2A5 Missense_Mutation p.K263R 0.31 tolerated(0.24) benign(0.042) TCGA-FR-A8YC-06 7 143771310 143771310 G A OR2A25 5'UTR 0.34 TCGA-FR-A8YC-06 7 143792332 143792332 C T OR2A12 Silent p.I44I 0.18 TCGA-FR-A8YC-06 7 143792383 143792383 C T OR2A12 Silent p.F61F 0.18 TCGA-FR-A8YC-06 7 147336270 147336270 A T CNTNAP2 Missense_Mutation p.K657I 0.23 tolerated(0.05) benign(0.065) TCGA-FR-A8YC-06 7 147844719 147844719 G A CNTNAP2 Silent p.Q897Q 0.21 TCGA-FR-A8YC-06 7 148287995 148287995 G A C7orf33 5'UTR 0.21 TCGA-FR-A8YC-06 7 148288173 148288173 G A C7orf33 Silent p.R52R 0.29 TCGA-FR-A8YC-06 7 149419895 149419895 C T KRBA1 Missense_Mutation p.P207L 0.18 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 7 149557668 149557668 C T ZNF862 Silent p.F473F 0.33 TCGA-FR-A8YC-06 7 149559463 149559463 G A ZNF862 Missense_Mutation p.G1072S 0.52 tolerated(0.16) probably_damaging(0.993) TCGA-FR-A8YC-06 7 150036149 150036149 A G RARRES2 Missense_Mutation p.C101R 0.40 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 150174683 150174683 G A GIMAP8 Missense_Mutation p.E605K 0.42 tolerated(0.09) probably_damaging(0.993) TCGA-FR-A8YC-06 7 150217300 150217300 G A GIMAP7 Missense_Mutation p.E80K 0.40 deleterious(0.01) probably_damaging(0.932) TCGA-FR-A8YC-06 7 150217857 150217857 G A GIMAP7 Silent p.R265R 0.40 TCGA-FR-A8YC-06 7 150217919 150217919 A G GIMAP7 Missense_Mutation p.E286G 0.12 tolerated(0.07) benign(0.001) TCGA-FR-A8YC-06 7 150267047 150267047 G A GIMAP4 Missense_Mutation p.G20R 0.51 deleterious(0.01) probably_damaging(0.979) TCGA-FR-A8YC-06 7 150269223 150269223 G A GIMAP4 Missense_Mutation p.G22E 0.45 tolerated(0.2) benign(0.037) TCGA-FR-A8YC-06 7 150270186 150270186 C T GIMAP4 3'UTR 0.47 TCGA-FR-A8YC-06 7 150325338 150325338 G A GIMAP6 Silent p.I116I 0.16 TCGA-FR-A8YC-06 7 150389469 150389469 G A GIMAP2 Missense_Mutation p.G32E 0.53 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 7 150439915 150439915 C T GIMAP5 Missense_Mutation p.L230F 0.27 tolerated(0.14) benign(0.364) TCGA-FR-A8YC-06 7 150501513 150501513 C T TMEM176A Silent p.L207L 0.25 TCGA-FR-A8YC-06 7 150554968 150554968 C T AOC1 Silent p.Y470Y 0.20 TCGA-FR-A8YC-06 7 150714156 150714156 G A ATG9B Silent p.T752T 0.44 TCGA-FR-A8YC-06 7 150731895 150731895 C T ABCB8 Silent p.S248S 0.40 TCGA-FR-A8YC-06 7 150747227 150747227 A C ASIC3 Missense_Mutation p.N190T 0.25 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 7 150772706 150772706 T C SLC4A2 Silent p.V1105V 0.49 TCGA-FR-A8YC-06 7 151873309 151873309 G A KMT2C Missense_Mutation p.R3077C 0.41 probably_damaging(0.999) TCGA-FR-A8YC-06 7 151873701 151873701 G A KMT2C Missense_Mutation p.S2946F 0.16 possibly_damaging(0.707) TCGA-FR-A8YC-06 7 151879105 151879105 G A KMT2C Missense_Mutation p.S1947F 0.21 probably_damaging(0.926) TCGA-FR-A8YC-06 7 151927049 151927049 G A KMT2C Nonsense_Mutation p.Q979* 0.07 TCGA-FR-A8YC-06 7 151970842 151970842 G A KMT2C Silent p.F320F 0.03 TCGA-FR-A8YC-06 7 1529255 1529255 G A INTS1 Silent p.V743V 0.62 TCGA-FR-A8YC-06 7 154738525 154738525 T G PAXIP1 Splice_Site p.X975_splice 0.56 TCGA-FR-A8YC-06 7 155537952 155537952 C T RBM33 Nonsense_Mutation p.Q879* 0.17 TCGA-FR-A8YC-06 7 157926699 157926699 C T PTPRN2 Missense_Mutation p.R409Q 0.49 tolerated(0.87) benign(0.001) TCGA-FR-A8YC-06 7 157931057 157931057 C T PTPRN2 Missense_Mutation p.R354K 0.26 tolerated(0.97) benign(0) TCGA-FR-A8YC-06 7 157931073 157931073 G A PTPRN2 Nonsense_Mutation p.R349* 0.54 TCGA-FR-A8YC-06 7 1586673 1586673 C T TMEM184A Missense_Mutation p.G386D 0.59 tolerated(0.06) benign(0.008) TCGA-FR-A8YC-06 7 16131375 16131375 G A ISPD Missense_Mutation p.A434V 0.71 deleterious(0.02) benign(0.169) TCGA-FR-A8YC-06 7 16834596 16834596 G A AGR2 Missense_Mutation p.R148C 0.32 deleterious(0) probably_damaging(0.944) TCGA-FR-A8YC-06 7 17834006 17834006 G A SNX13 Intron 0.29 TCGA-FR-A8YC-06 7 18066867 18066867 G A PRPS1L1 Missense_Mutation p.S180F 0.11 deleterious(0) possibly_damaging(0.541) TCGA-FR-A8YC-06 7 18067292 18067292 C T PRPS1L1 Silent p.Q38Q 0.19 TCGA-FR-A8YC-06 7 20739703 20739703 G A ABCB5 Missense_Mutation p.G761E 0.42 deleterious(0.02) possibly_damaging(0.527) TCGA-FR-A8YC-06 7 21600725 21600725 C T DNAH11 Silent p.L307L 0.32 TCGA-FR-A8YC-06 7 21698617 21698617 G A DNAH11 Missense_Mutation p.E1771K 0.58 benign(0.115) TCGA-FR-A8YC-06 7 21750265 21750265 G A DNAH11 Missense_Mutation p.G2267S 0.56 probably_damaging(0.997) TCGA-FR-A8YC-06 7 21932126 21932126 G C DNAH11 Missense_Mutation p.E4204D 0.24 benign(0.031) TCGA-FR-A8YC-06 7 23682795 23682795 C T CCDC126 3'UTR 0.47 TCGA-FR-A8YC-06 7 24749994 24749994 G A DFNA5 Silent p.L237L 0.40 TCGA-FR-A8YC-06 7 25194678 25194678 G A C7orf31 Missense_Mutation p.P183S 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-FR-A8YC-06 7 2580957 2580957 G A BRAT1 Silent p.F432F 0.20 TCGA-FR-A8YC-06 7 26236636 26236636 T C HNRNPA2B1 Missense_Mutation p.E101G 0.50 deleterious(0.03) benign(0.122) TCGA-FR-A8YC-06 7 27211522 27211522 G A HOXA10 Missense_Mutation p.S410F 0.36 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YC-06 7 2749328 2749328 C T AMZ1 Missense_Mutation p.R276C 0.14 tolerated(0.06) benign(0.028) TCGA-FR-A8YC-06 7 2752198 2752198 C T AMZ1 Silent p.L395L 0.32 TCGA-FR-A8YC-06 7 2962324 2962324 C T CARD11 Nonsense_Mutation p.W738* 0.23 TCGA-FR-A8YC-06 7 2985489 2985489 C T CARD11 Missense_Mutation p.G108R 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 31016155 31016155 G A GHRHR Silent p.L362L 0.26 TCGA-FR-A8YC-06 7 31146260 31146260 C T ADCYAP1R1 Missense_Mutation p.R485C 0.29 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 7 31378696 31378696 C T NEUROD6 Missense_Mutation p.E63K 0.40 tolerated(0.16) benign(0.003) TCGA-FR-A8YC-06 7 31862768 31862768 C G PDE1C Missense_Mutation p.V561L 0.34 tolerated(0.12) benign(0.007) TCGA-FR-A8YC-06 7 31867978 31867978 C T PDE1C Missense_Mutation p.E465K 0.37 deleterious(0) probably_damaging(0.975) TCGA-FR-A8YC-06 7 33055425 33055425 C A NT5C3A Missense_Mutation p.A256S 0.14 deleterious(0.04) benign(0.027) TCGA-FR-A8YC-06 7 34014352 34014352 G A BMPER Missense_Mutation p.E178K 0.21 tolerated(0.26) benign(0.049) TCGA-FR-A8YC-06 7 34851459 34851459 G A NPSR1 Missense_Mutation p.M154I 0.49 deleterious(0.01) possibly_damaging(0.796) TCGA-FR-A8YC-06 7 36561666 36561666 C T AOAH Silent p.V526V 0.24 TCGA-FR-A8YC-06 7 36570054 36570054 G A AOAH Missense_Mutation p.L498F 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-FR-A8YC-06 7 36580088 36580088 G A AOAH Silent p.D381D 0.18 TCGA-FR-A8YC-06 7 36958991 36958991 C T ELMO1 Intron 0.52 TCGA-FR-A8YC-06 7 38247101 38247101 C T STARD3NL 5'UTR 0.35 TCGA-FR-A8YC-06 7 38457460 38457460 C T AMPH Missense_Mutation p.D455N 0.28 tolerated(0.1) benign(0.001) TCGA-FR-A8YC-06 7 4091416 4091416 G A SDK1 Silent p.G955G 0.26 TCGA-FR-A8YC-06 7 4150337 4150337 G A SDK1 Missense_Mutation p.E1123K 0.18 deleterious(0.03) possibly_damaging(0.702) TCGA-FR-A8YC-06 7 42007283 42007283 T C GLI3 Missense_Mutation p.E781G 0.24 tolerated(0.05) probably_damaging(0.96) TCGA-FR-A8YC-06 7 42088174 42088174 G A GLI3 Missense_Mutation p.P199S 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-FR-A8YC-06 7 44282207 44282207 G C CAMK2B Missense_Mutation p.D216E 0.11 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FR-A8YC-06 7 44432003 44432003 T A NUDCD3 Nonsense_Mutation p.K290* 0.43 TCGA-FR-A8YC-06 7 44561817 44561817 G A NPC1L1 Missense_Mutation p.L888F 0.39 tolerated(0.09) benign(0.014) TCGA-FR-A8YC-06 7 44706375 44706375 C T OGDH Silent p.F186F 0.14 TCGA-FR-A8YC-06 7 45699774 45699774 C T ADCY1 Missense_Mutation p.R481C 0.38 deleterious(0) possibly_damaging(0.88) TCGA-FR-A8YC-06 7 47698765 47698765 G A C7orf65 Nonsense_Mutation p.W132* 0.19 TCGA-FR-A8YC-06 7 47930166 47930166 C G PKD1L1 Silent p.L883L 0.32 TCGA-FR-A8YC-06 7 47930168 47930168 G A PKD1L1 Silent p.L883L 0.26 TCGA-FR-A8YC-06 7 48028472 48028472 G A SUN3 Silent p.I289I 0.20 TCGA-FR-A8YC-06 7 48313074 48313074 C T ABCA13 Missense_Mutation p.P1271S 0.65 possibly_damaging(0.452) TCGA-FR-A8YC-06 7 55220293 55220293 C T EGFR Missense_Mutation p.P228L 0.26 tolerated(0.07) probably_damaging(1) TCGA-FR-A8YC-06 7 55499007 55499007 G A LANCL2 Silent p.R449R 0.29 TCGA-FR-A8YC-06 7 57188424 57188424 A T ZNF479 Missense_Mutation p.I233K 0.42 tolerated(0.81) benign(0.099) TCGA-FR-A8YC-06 7 5998670 5998670 C T RSPH10B Missense_Mutation p.E205K 0.36 tolerated(0.08) possibly_damaging(0.514) TCGA-FR-A8YC-06 7 63538175 63538175 C T ZNF727 Missense_Mutation p.H250Y 0.40 deleterious(0.03) probably_damaging(0.943) TCGA-FR-A8YC-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.24 deleterious(0) possibly_damaging(0.869) TCGA-FR-A8YC-06 7 64292912 64292912 C T ZNF138 3'Flank 0.11 TCGA-FR-A8YC-06 7 66490010 66490010 G A TYW1 Splice_Site p.X328_splice 0.29 TCGA-FR-A8YC-06 7 720262 720262 G A PRKAR1B Silent p.A93A 0.19 TCGA-FR-A8YC-06 7 72277746 72277746 T A TYW1B Missense_Mutation p.K212N 0.43 tolerated(0.27) possibly_damaging(0.623) TCGA-FR-A8YC-06 7 72397476 72397476 C T POM121 Missense_Mutation p.L68F 0.40 tolerated(0.72) benign(0.028) TCGA-FR-A8YC-06 7 72742650 72742650 C T FKBP6 Nonsense_Mutation p.R44* 0.35 TCGA-FR-A8YC-06 7 73008082 73008082 G A MLXIPL 3'UTR 0.26 TCGA-FR-A8YC-06 7 73008725 73008725 G A MLXIPL Silent p.I773I 0.15 TCGA-FR-A8YC-06 7 73151970 73151970 G A ABHD11 Silent p.P128P 0.29 TCGA-FR-A8YC-06 7 73151971 73151971 G A ABHD11 Missense_Mutation p.P128L 0.29 tolerated(0.2) benign(0.001) TCGA-FR-A8YC-06 7 73245808 73245808 C T CLDN4 Silent p.L93L 0.38 TCGA-FR-A8YC-06 7 73470710 73470710 C T ELN Silent p.V420V 0.34 TCGA-FR-A8YC-06 7 73474350 73474350 C T ELN Missense_Mutation p.P517S 0.20 unknown(0) TCGA-FR-A8YC-06 7 73814714 73814714 C T CLIP2 Silent p.S965S 0.42 TCGA-FR-A8YC-06 7 7420438 7420438 C T COL28A1 Missense_Mutation p.G754E 0.44 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 7 75052375 75052375 G A POM121C Missense_Mutation p.S387F 0.33 deleterious(0) possibly_damaging(0.804) TCGA-FR-A8YC-06 7 750990 750990 C T PRKAR1B Silent p.R51R 0.43 TCGA-FR-A8YC-06 7 76891536 76891536 G A CCDC146 Missense_Mutation p.R362Q 0.20 deleterious(0) possibly_damaging(0.742) TCGA-FR-A8YC-06 7 77764507 77764507 G A MAGI2 Silent p.I954I 0.45 TCGA-FR-A8YC-06 7 81588658 81588658 G A CACNA2D1 Missense_Mutation p.P1031L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A8YC-06 7 82544953 82544953 C T PCLO Missense_Mutation p.D4117N 0.27 unknown(0) TCGA-FR-A8YC-06 7 82545679 82545679 C T PCLO Missense_Mutation p.E3875K 0.20 unknown(0) TCGA-FR-A8YC-06 7 82579581 82579581 C T PCLO Silent p.V3441V 0.30 TCGA-FR-A8YC-06 7 82582033 82582033 C T PCLO Missense_Mutation p.D2746N 0.37 unknown(0) TCGA-FR-A8YC-06 7 82583806 82583806 C T PCLO Missense_Mutation p.E2155K 0.19 unknown(0) TCGA-FR-A8YC-06 7 82583859 82583859 G A PCLO Missense_Mutation p.S2137L 0.13 unknown(0) TCGA-FR-A8YC-06 7 82585878 82585878 G A PCLO Missense_Mutation p.S1464L 0.51 unknown(0) TCGA-FR-A8YC-06 7 82595178 82595178 T G PCLO Missense_Mutation p.E1309A 0.10 unknown(0) TCGA-FR-A8YC-06 7 86394550 86394550 G A GRM3 Missense_Mutation p.R30K 0.21 tolerated(1) benign(0.002) TCGA-FR-A8YC-06 7 86416290 86416290 G A GRM3 Silent p.V394V 0.15 TCGA-FR-A8YC-06 7 87339915 87339915 G A RUNDC3B Missense_Mutation p.M151I 0.48 deleterious(0.02) possibly_damaging(0.902) TCGA-FR-A8YC-06 7 87516672 87516672 C T DBF4 Missense_Mutation p.S160L 0.38 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YC-06 7 87760790 87760790 C T ADAM22 Intron 0.54 TCGA-FR-A8YC-06 7 88965077 88965077 C T ZNF804B Silent p.I927I 0.19 TCGA-FR-A8YC-06 7 89753423 89753423 A G RP5-1121E10.2 5'Flank 0.56 TCGA-FR-A8YC-06 7 89856596 89856596 C T STEAP2 Silent p.S268S 0.54 TCGA-FR-A8YC-06 7 91632016 91632016 G A AKAP9 Missense_Mutation p.E929K 0.47 probably_damaging(0.987) TCGA-FR-A8YC-06 7 92247413 92247413 G A CDK6 Silent p.I269I 0.22 TCGA-FR-A8YC-06 7 92734330 92734330 C T SAMD9 Missense_Mutation p.A361T 0.19 tolerated(0.66) benign(0.003) TCGA-FR-A8YC-06 7 92734412 92734412 C T SAMD9 Nonsense_Mutation p.W333* 0.18 TCGA-FR-A8YC-06 7 92761926 92761926 G A SAMD9L Missense_Mutation p.S1120L 0.36 tolerated(0.08) benign(0.018) TCGA-FR-A8YC-06 7 92826587 92826587 C T HEPACAM2 Missense_Mutation p.E390K 0.14 tolerated(0.83) benign(0.002) TCGA-FR-A8YC-06 7 92905587 92905587 C T CCDC132 Silent p.F304F 0.39 TCGA-FR-A8YC-06 7 93065474 93065474 G A CALCR Silent p.F347F 0.46 TCGA-FR-A8YC-06 7 93108702 93108702 C T CALCR Missense_Mutation p.D75N 0.33 tolerated(0.17) benign(0.023) TCGA-FR-A8YC-06 7 93555582 93555582 C T GNG11 3'UTR 0.43 TCGA-FR-A8YC-06 7 94050363 94050363 G A COL1A2 Missense_Mutation p.G780R 0.49 unknown(0) TCGA-FR-A8YC-06 7 94054474 94054474 G A COL1A2 Missense_Mutation p.G907S 0.51 unknown(0) TCGA-FR-A8YC-06 7 94248237 94248237 G A SGCE Silent p.F165F 0.42 TCGA-FR-A8YC-06 7 94259056 94259056 C T SGCE Silent p.G69G 0.18 TCGA-FR-A8YC-06 7 94919602 94919602 C T PPP1R9A Missense_Mutation p.A1371V 0.20 deleterious_low_confidence(0.01) benign(0.236) TCGA-FR-A8YC-06 7 95001507 95001507 C A PON3 Silent p.G115G 0.38 TCGA-FR-A8YC-06 7 97369311 97369311 G A TAC1 3'UTR 0.33 TCGA-FR-A8YC-06 7 97822302 97822302 C T LMTK2 Missense_Mutation p.P842L 0.35 tolerated(0.42) benign(0.004) TCGA-FR-A8YC-06 7 98509658 98509658 C T TRRAP Missense_Mutation p.S674F 0.32 possibly_damaging(0.459) TCGA-FR-A8YC-06 7 98576467 98576467 C T TRRAP Silent p.L2851L 0.31 TCGA-FR-A8YC-06 7 99359693 99359693 C T CYP3A4 Nonsense_Mutation p.W408* 0.22 TCGA-FR-A8YC-06 7 99695779 99695779 G A MCM7 Silent p.F285F 0.32 TCGA-FR-A8YC-06 7 99754260 99754260 T C C7orf43 Missense_Mutation p.Y358C 0.35 deleterious(0) probably_damaging(0.966) TCGA-FR-A8YC-06 7 99997601 99997601 C T PILRA 3'UTR 0.24 TCGA-FR-A8YC-06 8 101237420 101237420 G A SPAG1 Missense_Mutation p.E570K 0.20 deleterious(0.02) benign(0.06) TCGA-FR-A8YC-06 8 101620777 101620777 G A SNX31 Missense_Mutation p.S209F 0.48 deleterious(0) possibly_damaging(0.897) TCGA-FR-A8YC-06 8 104427594 104427594 G A DCAF13 Missense_Mutation p.E126K 0.60 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-FR-A8YC-06 8 10466555 10466555 C T RP1L1 Missense_Mutation p.E1685K 0.23 unknown(0) TCGA-FR-A8YC-06 8 10467470 10467470 C T RP1L1 Missense_Mutation p.G1380R 0.21 unknown(0) TCGA-FR-A8YC-06 8 10469934 10469934 C T RP1L1 Silent p.K558K 0.23 TCGA-FR-A8YC-06 8 10532210 10532210 G A C8orf74 Missense_Mutation p.E35K 0.29 deleterious(0) probably_damaging(0.932) TCGA-FR-A8YC-06 8 105360766 105360766 C T DCSTAMP Intron 0.24 TCGA-FR-A8YC-06 8 105361804 105361804 G A DCSTAMP Missense_Mutation p.G342R 0.59 tolerated(0.63) benign(0.004) TCGA-FR-A8YC-06 8 105440322 105440322 A T DPYS Missense_Mutation p.D326E 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-FR-A8YC-06 8 105463554 105463554 C T DPYS Missense_Mutation p.E115K 0.47 tolerated(0.09) benign(0.105) TCGA-FR-A8YC-06 8 106431503 106431503 G A ZFPM2 Missense_Mutation p.E58K 0.52 tolerated(0.26) benign(0.12) TCGA-FR-A8YC-06 8 10892720 10892720 G A XKR6 Intron 0.27 TCGA-FR-A8YC-06 8 109001415 109001415 C T RSPO2 Missense_Mutation p.G51E 0.34 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 8 109796632 109796632 C T TMEM74 Silent p.V232V 0.32 TCGA-FR-A8YC-06 8 110100402 110100402 A C TRHR Missense_Mutation p.N221H 0.29 deleterious(0.01) benign(0.13) TCGA-FR-A8YC-06 8 110131460 110131460 C T TRHR Nonsense_Mutation p.Q325* 0.26 TCGA-FR-A8YC-06 8 110355723 110355723 T C ENY2 3'UTR 0.59 TCGA-FR-A8YC-06 8 110420376 110420376 A T PKHD1L1 Missense_Mutation p.T638S 0.26 tolerated(0.14) benign(0.178) TCGA-FR-A8YC-06 8 110431368 110431368 G A PKHD1L1 Silent p.T801T 0.59 TCGA-FR-A8YC-06 8 110460499 110460499 C T PKHD1L1 Silent p.I1968I 0.56 TCGA-FR-A8YC-06 8 110461698 110461698 G A PKHD1L1 Missense_Mutation p.E2053K 0.20 tolerated(0.8) benign(0.002) TCGA-FR-A8YC-06 8 11189479 11189479 C T SLC35G5 Silent p.S288S 0.60 TCGA-FR-A8YC-06 8 113314135 113314135 G A CSMD3 Missense_Mutation p.S2776L 0.58 tolerated(0.29) benign(0.099) TCGA-FR-A8YC-06 8 113326251 113326251 G A CSMD3 Missense_Mutation p.S2527F 0.31 tolerated(0.07) probably_damaging(0.961) TCGA-FR-A8YC-06 8 113702187 113702187 C T CSMD3 Missense_Mutation p.E689K 0.57 deleterious(0.02) possibly_damaging(0.576) TCGA-FR-A8YC-06 8 113988197 113988197 G A CSMD3 Missense_Mutation p.S404L 0.21 tolerated_low_confidence(0.65) benign(0.001) TCGA-FR-A8YC-06 8 114290842 114290842 C T CSMD3 Missense_Mutation p.G165R 0.26 deleterious(0) possibly_damaging(0.471) TCGA-FR-A8YC-06 8 118159373 118159373 C T SLC30A8 Silent p.F84F 0.65 TCGA-FR-A8YC-06 8 119936896 119936896 C T TNFRSF11B Missense_Mutation p.G308E 0.53 tolerated(0.34) benign(0.009) TCGA-FR-A8YC-06 8 119938794 119938794 C T TNFRSF11B Silent p.Q252Q 0.21 TCGA-FR-A8YC-06 8 11994982 11994982 G A USP17L2 Nonsense_Mutation p.Q430* 0.36 TCGA-FR-A8YC-06 8 120116124 120116124 T A COLEC10 Missense_Mutation p.F144L 0.47 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 8 120252425 120252425 A G MAL2 Silent p.T108T 0.26 TCGA-FR-A8YC-06 8 124821196 124821196 C T FAM91A1 Missense_Mutation p.S734F 0.30 deleterious(0.02) possibly_damaging(0.865) TCGA-FR-A8YC-06 8 125334370 125334370 A G TMEM65 Missense_Mutation p.L164P 0.30 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 8 130789622 130789622 G A GSDMC Missense_Mutation p.S71L 0.20 tolerated(0.05) probably_damaging(0.995) TCGA-FR-A8YC-06 8 130789715 130789715 C T GSDMC Missense_Mutation p.R40Q 0.60 tolerated(0.71) benign(0.266) TCGA-FR-A8YC-06 8 131916182 131916182 C T ADCY8 Missense_Mutation p.E583K 0.59 tolerated(0.1) benign(0.414) TCGA-FR-A8YC-06 8 131964220 131964220 G A ADCY8 Missense_Mutation p.P379S 0.24 deleterious(0.01) benign(0.241) TCGA-FR-A8YC-06 8 133045358 133045358 G A OC90 Missense_Mutation p.P263S 0.20 tolerated(0.19) possibly_damaging(0.465) TCGA-FR-A8YC-06 8 133142126 133142127 - AGCGA KCNQ3 Frame_Shift_Ins p.E668Sfs*15 0.16 TCGA-FR-A8YC-06 8 133152384 133152384 C T KCNQ3 Missense_Mutation p.G503R 0.33 tolerated(0.52) possibly_damaging(0.806) TCGA-FR-A8YC-06 8 133898962 133898962 C T TG Missense_Mutation p.P449S 0.25 deleterious(0) probably_damaging(0.995) TCGA-FR-A8YC-06 8 133899689 133899689 G A TG Missense_Mutation p.G691E 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 8 134042144 134042144 G A TG Missense_Mutation p.G2372E 0.26 tolerated(0.32) benign(0) TCGA-FR-A8YC-06 8 135613907 135613907 G A ZFAT Silent p.L685L 0.30 TCGA-FR-A8YC-06 8 139144985 139144985 C T FAM135B Missense_Mutation p.D1358N 0.29 deleterious(0.02) benign(0.041) TCGA-FR-A8YC-06 8 139144986 139144986 C T FAM135B Silent p.K1357K 0.29 TCGA-FR-A8YC-06 8 139155334 139155334 A T FAM135B Missense_Mutation p.F1187I 0.60 deleterious(0.01) possibly_damaging(0.587) TCGA-FR-A8YC-06 8 139164120 139164120 C T FAM135B Silent p.R866R 0.61 TCGA-FR-A8YC-06 8 139380227 139380227 G A FAM135B 5'UTR 0.29 TCGA-FR-A8YC-06 8 139603685 139603685 C T COL22A1 Missense_Mutation p.G1559R 0.68 unknown(0) TCGA-FR-A8YC-06 8 139620186 139620186 C T COL22A1 Missense_Mutation p.G1342E 0.21 unknown(0) TCGA-FR-A8YC-06 8 139793219 139793219 G A COL22A1 Missense_Mutation p.S534F 0.27 unknown(0) TCGA-FR-A8YC-06 8 139825249 139825249 C T COL22A1 Missense_Mutation p.R420Q 0.54 unknown(0) TCGA-FR-A8YC-06 8 141542114 141542114 G C AGO2 3'UTR 0.32 TCGA-FR-A8YC-06 8 141566294 141566294 G A AGO2 Missense_Mutation p.P373L 0.36 tolerated(0.07) possibly_damaging(0.883) TCGA-FR-A8YC-06 8 142450461 142450461 G T CTD-3064M3.7 3'Flank 0.13 TCGA-FR-A8YC-06 8 143784564 143784564 G A LY6K Silent p.A91A 0.29 TCGA-FR-A8YC-06 8 143958518 143958518 C T CYP11B1 Silent p.L172L 0.33 TCGA-FR-A8YC-06 8 144130645 144130645 G A C8orf31 Silent p.G125G 0.60 TCGA-FR-A8YC-06 8 144522419 144522419 G T ZC3H3 Silent p.S869S 0.67 TCGA-FR-A8YC-06 8 144550683 144550683 G A ZC3H3 Silent p.I658I 0.67 TCGA-FR-A8YC-06 8 144590021 144590021 T A ZC3H3 Missense_Mutation p.K537M 0.27 deleterious(0) probably_damaging(0.935) TCGA-FR-A8YC-06 8 144662701 144662701 G A EEF1D Missense_Mutation p.S562F 0.51 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YC-06 8 144942572 144942572 G A EPPK1 Missense_Mutation p.P1617L 0.32 probably_damaging(1) TCGA-FR-A8YC-06 8 144944962 144944962 G A EPPK1 Silent p.S820S 0.23 TCGA-FR-A8YC-06 8 145059272 145059272 C T PARP10 Missense_Mutation p.E300K 0.50 deleterious(0.05) benign(0.036) TCGA-FR-A8YC-06 8 145649225 145649225 G A VPS28 3'UTR 0.31 TCGA-FR-A8YC-06 8 145770709 145770709 G A ARHGAP39 Silent p.F815F 0.55 TCGA-FR-A8YC-06 8 15967502 15967502 C T MSR1 3'UTR 0.17 TCGA-FR-A8YC-06 8 17065564 17065564 T A ZDHHC2 Nonsense_Mutation p.Y231* 0.30 TCGA-FR-A8YC-06 8 17400959 17400959 G A SLC7A2 Missense_Mutation p.M77I 0.53 tolerated(0.11) benign(0.002) TCGA-FR-A8YC-06 8 17409416 17409416 C T SLC7A2 Missense_Mutation p.P366S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 8 18666282 18666282 C T PSD3 Intron 0.31 TCGA-FR-A8YC-06 8 22021531 22021531 G A SFTPC Missense_Mutation p.E191K 0.22 tolerated(0.38) benign(0.1) TCGA-FR-A8YC-06 8 22138990 22138990 G A PIWIL2 Silent p.G129G 0.23 TCGA-FR-A8YC-06 8 22426776 22426776 C T SORBS3 Missense_Mutation p.S474F 0.19 deleterious(0.02) benign(0.25) TCGA-FR-A8YC-06 8 22570963 22570963 C T PEBP4 Missense_Mutation p.D202N 0.24 deleterious(0) probably_damaging(0.991) TCGA-FR-A8YC-06 8 23167261 23167261 G A LOXL2 Silent p.S600S 0.59 TCGA-FR-A8YC-06 8 23191075 23191075 C T LOXL2 Missense_Mutation p.E269K 0.60 deleterious(0) possibly_damaging(0.794) TCGA-FR-A8YC-06 8 23299177 23299177 G A ENTPD4 Missense_Mutation p.R263C 0.62 deleterious(0.01) probably_damaging(0.982) TCGA-FR-A8YC-06 8 24167450 24167450 G A ADAM28 Missense_Mutation p.G65E 0.18 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YC-06 8 24170961 24170961 G A ADAM28 Silent p.R148R 0.57 TCGA-FR-A8YC-06 8 24178763 24178763 C T ADAM28 Silent p.I227I 0.71 TCGA-FR-A8YC-06 8 24178771 24178771 G A ADAM28 Missense_Mutation p.R230K 0.14 deleterious(0.01) possibly_damaging(0.814) TCGA-FR-A8YC-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.22 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 8 24249813 24249813 G A ADAMDEC1 Missense_Mutation p.E43K 0.64 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YC-06 8 24259526 24259526 C T ADAMDEC1 Missense_Mutation p.P414L 0.20 tolerated(0.05) possibly_damaging(0.856) TCGA-FR-A8YC-06 8 24298566 24298566 A G ADAM7 5'UTR 0.27 TCGA-FR-A8YC-06 8 24358371 24358371 C T ADAM7 Missense_Mutation p.R691C 0.18 deleterious(0.02) benign(0.051) TCGA-FR-A8YC-06 8 24813816 24813816 C T CTD-2168K21.2 5'Flank 0.40 TCGA-FR-A8YC-06 8 25708250 25708250 G A EBF2 Missense_Mutation p.S519F 0.36 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-FR-A8YC-06 8 25720242 25720242 G A EBF2 Missense_Mutation p.P361S 0.63 deleterious(0.01) probably_damaging(0.922) TCGA-FR-A8YC-06 8 25747354 25747354 C T EBF2 Missense_Mutation p.G222E 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A8YC-06 8 26623475 26623475 C T ADRA1A Intron 0.25 TCGA-FR-A8YC-06 8 27145378 27145378 C T TRIM35 Missense_Mutation p.D391N 0.42 tolerated(0.22) possibly_damaging(0.782) TCGA-FR-A8YC-06 8 27327330 27327330 G A CHRNA2 Missense_Mutation p.S81L 0.50 deleterious(0) possibly_damaging(0.794) TCGA-FR-A8YC-06 8 27464020 27464020 C T CLU Missense_Mutation p.E90K 0.27 deleterious(0.01) possibly_damaging(0.612) TCGA-FR-A8YC-06 8 2806857 2806857 C T CSMD1 Missense_Mutation p.G3456R 0.13 probably_damaging(0.923) TCGA-FR-A8YC-06 8 2815309 2815309 G A CSMD1 Silent p.F3241F 0.58 TCGA-FR-A8YC-06 8 2836155 2836155 G A CSMD1 Nonsense_Mutation p.R2849* 0.73 TCGA-FR-A8YC-06 8 3047524 3047524 C T CSMD1 Missense_Mutation p.G1770R 0.46 probably_damaging(0.998) TCGA-FR-A8YC-06 8 30703028 30703028 C T TEX15 Missense_Mutation p.G1169E 0.25 tolerated(0.9) benign(0.041) TCGA-FR-A8YC-06 8 30958442 30958442 T C WRN Silent p.L687L 0.10 TCGA-FR-A8YC-06 8 3205615 3205615 C T CSMD1 Missense_Mutation p.D1125N 0.24 benign(0.072) TCGA-FR-A8YC-06 8 3263610 3263610 G A CSMD1 Silent p.S735S 0.18 TCGA-FR-A8YC-06 8 3326294 3326294 A G CSMD1 Missense_Mutation p.W501R 0.25 probably_damaging(0.983) TCGA-FR-A8YC-06 8 3443660 3443660 C T CSMD1 Missense_Mutation p.R407Q 0.19 probably_damaging(0.997) TCGA-FR-A8YC-06 8 35624578 35624578 C T UNC5D Silent p.I824I 0.22 TCGA-FR-A8YC-06 8 37730635 37730635 G A RAB11FIP1 Missense_Mutation p.S562F 0.24 tolerated(0.49) benign(0.116) TCGA-FR-A8YC-06 8 38001853 38001853 C T STAR Missense_Mutation p.D266N 0.59 deleterious(0.01) benign(0.404) TCGA-FR-A8YC-06 8 39142328 39142328 C T ADAM32 3'UTR 0.48 TCGA-FR-A8YC-06 8 39468132 39468132 G A ADAM18 Missense_Mutation p.M143I 0.62 tolerated(1) benign(0.001) TCGA-FR-A8YC-06 8 39505984 39505984 C T ADAM18 Nonsense_Mutation p.Q390* 0.36 TCGA-FR-A8YC-06 8 39564341 39564341 C T ADAM18 Silent p.F645F 0.24 TCGA-FR-A8YC-06 8 39785539 39785539 C G IDO1 Missense_Mutation p.I349M 0.53 tolerated(0.14) possibly_damaging(0.819) TCGA-FR-A8YC-06 8 41581107 41581107 C T ANK1 Silent p.V285V 0.53 TCGA-FR-A8YC-06 8 41655067 41655067 C T ANK1 Intron 0.85 TCGA-FR-A8YC-06 8 41792357 41792357 A T KAT6A Silent p.L1127L 0.27 TCGA-FR-A8YC-06 8 42147788 42147788 G A IKBKB Silent p.R105R 0.40 TCGA-FR-A8YC-06 8 42587176 42587176 C T CHRNB3 Silent p.I242I 0.21 TCGA-FR-A8YC-06 8 48743256 48743256 G A PRKDC Silent p.V2768V 0.27 TCGA-FR-A8YC-06 8 52746100 52746100 A G PCMTD1 Missense_Mutation p.L187S 0.65 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 8 53062479 53062479 C T ST18 Missense_Mutation p.R622Q 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-FR-A8YC-06 8 54141825 54141825 G A OPRK1 3'UTR 0.58 TCGA-FR-A8YC-06 8 54142201 54142201 G A OPRK1 Missense_Mutation p.R267C 0.26 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 8 54142271 54142271 G A OPRK1 Silent p.I243I 0.26 TCGA-FR-A8YC-06 8 55371624 55371624 C T SOX17 Missense_Mutation p.S105L 0.19 deleterious(0) probably_damaging(0.979) TCGA-FR-A8YC-06 8 55537744 55537744 C T RP1 Silent p.I434I 0.45 TCGA-FR-A8YC-06 8 55538414 55538414 C T RP1 Missense_Mutation p.P658S 0.52 tolerated(0.2) benign(0.035) TCGA-FR-A8YC-06 8 55539628 55539628 G A RP1 Silent p.R1062R 0.29 TCGA-FR-A8YC-06 8 55540784 55540784 C T RP1 Missense_Mutation p.P1448S 0.50 deleterious(0.02) benign(0.382) TCGA-FR-A8YC-06 8 56436804 56436804 G A XKR4 3'UTR 0.17 TCGA-FR-A8YC-06 8 57079103 57079103 G A PLAG1 Missense_Mutation p.S401F 0.21 deleterious(0.03) probably_damaging(0.962) TCGA-FR-A8YC-06 8 59059262 59059262 C T FAM110B Missense_Mutation p.S158F 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-FR-A8YC-06 8 6302408 6302408 A T MCPH1 Missense_Mutation p.R389W 0.53 deleterious(0) benign(0.298) TCGA-FR-A8YC-06 8 66616953 66616953 C T MTFR1 Silent p.P102P 0.58 TCGA-FR-A8YC-06 8 67061897 67061897 G A TRIM55 Silent p.Q207Q 0.33 TCGA-FR-A8YC-06 8 6728169 6728169 C T DEFB1 3'UTR 0.52 TCGA-FR-A8YC-06 8 6782356 6782356 C T DEFA6 Missense_Mutation p.R96K 0.67 tolerated(1) benign(0.1) TCGA-FR-A8YC-06 8 69017420 69017420 C T PREX2 Intron 0.26 TCGA-FR-A8YC-06 8 69017512 69017512 G A PREX2 Intron 0.55 TCGA-FR-A8YC-06 8 69351760 69351760 G A C8orf34 Silent p.E118E 0.32 TCGA-FR-A8YC-06 8 70981484 70981484 G A PRDM14 Silent p.F204F 0.28 TCGA-FR-A8YC-06 8 72973956 72973956 C T TRPA1 Missense_Mutation p.G283E 0.45 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YC-06 8 74205849 74205849 G A RPL7 5'UTR 0.29 TCGA-FR-A8YC-06 8 75263639 75263639 G A GDAP1 Missense_Mutation p.G83E 0.22 tolerated(0.4) benign(0.007) TCGA-FR-A8YC-06 8 75761500 75761500 C T PI15 3'UTR 0.23 TCGA-FR-A8YC-06 8 76471257 76471257 G A HNF4G Missense_Mutation p.E360K 0.51 deleterious(0) probably_damaging(0.948) TCGA-FR-A8YC-06 8 77896407 77896407 G A PEX2 Missense_Mutation p.S3F 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.534) TCGA-FR-A8YC-06 8 8197073 8197073 G A SGK223 Silent p.S745S 0.24 TCGA-FR-A8YC-06 8 8197074 8197074 G A SGK223 Missense_Mutation p.S745F 0.25 possibly_damaging(0.642) TCGA-FR-A8YC-06 8 86121503 86121503 G A E2F5 Missense_Mutation p.D248N 0.24 tolerated(0.11) benign(0.334) TCGA-FR-A8YC-06 8 86126080 86126080 C T E2F5 Nonsense_Mutation p.Q342* 0.54 TCGA-FR-A8YC-06 8 86242017 86242017 C T CA1 Silent p.L190L 0.21 TCGA-FR-A8YC-06 8 86356325 86356325 T C CA3 Silent p.D138D 0.64 TCGA-FR-A8YC-06 8 87241866 87241866 C T SLC7A13 Missense_Mutation p.G214E 0.20 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YC-06 8 87241983 87241983 G A SLC7A13 Missense_Mutation p.S175F 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-FR-A8YC-06 8 87410576 87410576 A G WWP1 Missense_Mutation p.R114G 0.24 tolerated(0.15) benign(0.001) TCGA-FR-A8YC-06 8 87679278 87679278 G A CNGB3 Missense_Mutation p.P243S 0.37 deleterious(0) probably_damaging(0.98) TCGA-FR-A8YC-06 8 92052877 92052877 G A TMEM55A Missense_Mutation p.P34L 0.35 tolerated(0.12) benign(0.002) TCGA-FR-A8YC-06 8 94746445 94746445 G A RBM12B Missense_Mutation p.R732C 0.58 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FR-A8YC-06 8 94777676 94777676 C T TMEM67 Silent p.S183S 0.25 TCGA-FR-A8YC-06 8 94793207 94793207 C G TMEM67 Missense_Mutation p.N325K 0.53 tolerated(0.1) benign(0.021) TCGA-FR-A8YC-06 8 9627651 9627651 C T TNKS Missense_Mutation p.S1259F 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 8 97243350 97243350 T C UQCRB Missense_Mutation p.T136A 0.50 tolerated_low_confidence(0.31) benign(0.224) TCGA-FR-A8YC-06 8 97318669 97318669 C T PTDSS1 Intron 0.36 TCGA-FR-A8YC-06 8 97797348 97797348 G A CPQ Missense_Mutation p.G75R 0.29 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YC-06 9 104449476 104449476 G A GRIN3A Missense_Mutation p.L236F 0.63 tolerated(0.9) benign(0.346) TCGA-FR-A8YC-06 9 105767266 105767266 G A CYLC2 Missense_Mutation p.G118D 0.85 tolerated(0.33) possibly_damaging(0.731) TCGA-FR-A8YC-06 9 107267434 107267434 G A OR13F1 Silent p.V297V 0.86 TCGA-FR-A8YC-06 9 107289291 107289291 G A OR13C4 Missense_Mutation p.S67F 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 9 107298797 107298797 C A OR13C3 Missense_Mutation p.D100Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YC-06 9 107298798 107298798 C T OR13C3 Silent p.L99L 0.23 TCGA-FR-A8YC-06 9 107367100 107367100 G A OR13C2 Missense_Mutation p.S270L 0.84 deleterious(0.02) benign(0.009) TCGA-FR-A8YC-06 9 111678488 111678488 G A IKBKAP Silent p.T318T 0.30 TCGA-FR-A8YC-06 9 113205845 113205845 G T SVEP1 Missense_Mutation p.S1540Y 0.62 benign(0.259) TCGA-FR-A8YC-06 9 113563038 113563038 G A MUSK Missense_Mutation p.E794K 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 9 114500707 114500707 T A C9orf84 Nonsense_Mutation p.K360* 0.88 TCGA-FR-A8YC-06 9 115593163 115593163 G A SNX30 Silent p.K206K 0.80 TCGA-FR-A8YC-06 9 116857376 116857376 A C KIF12 Missense_Mutation p.L211R 0.79 deleterious(0.01) probably_damaging(0.986) TCGA-FR-A8YC-06 9 118982275 118982275 G A PAPPA Missense_Mutation p.D660N 0.21 deleterious(0) possibly_damaging(0.822) TCGA-FR-A8YC-06 9 119188264 119188264 G A ASTN2 Missense_Mutation p.L1245F 0.82 deleterious(0.05) unknown(0) TCGA-FR-A8YC-06 9 120476108 120476108 C A TLR4 Missense_Mutation p.P568T 0.82 deleterious(0.03) probably_damaging(0.942) TCGA-FR-A8YC-06 9 125289385 125289385 T C OR1N1 Missense_Mutation p.N63S 0.83 tolerated(0.07) benign(0.022) TCGA-FR-A8YC-06 9 125316229 125316229 C T OR1N2 Missense_Mutation p.H261Y 0.84 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YC-06 9 125316328 125316328 C T OR1N2 Missense_Mutation p.L294F 0.87 tolerated(0.11) probably_damaging(0.919) TCGA-FR-A8YC-06 9 125377135 125377135 C T OR1Q1 Missense_Mutation p.S40F 0.29 deleterious(0.03) benign(0.003) TCGA-FR-A8YC-06 9 125437466 125437466 C T OR1L3 Missense_Mutation p.R20W 0.30 deleterious(0.03) benign(0.022) TCGA-FR-A8YC-06 9 126794764 126794764 G A LHX2 Silent p.V333V 0.83 TCGA-FR-A8YC-06 9 130581925 130581925 G A ENG Silent p.I429I 0.76 TCGA-FR-A8YC-06 9 13125284 13125284 C T MPDZ Missense_Mutation p.E1580K 0.79 deleterious(0.05) benign(0.197) TCGA-FR-A8YC-06 9 131296190 131296190 C T GLE1 Missense_Mutation p.P536S 0.65 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YC-06 9 131396511 131396511 C T WDR34 Missense_Mutation p.G456R 0.38 deleterious(0) probably_damaging(0.943) TCGA-FR-A8YC-06 9 134351135 134351135 C T PRRC2B Missense_Mutation p.P1207S 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-FR-A8YC-06 9 135073761 135073761 G A NTNG2 Missense_Mutation p.E208K 0.35 deleterious(0.01) benign(0.277) TCGA-FR-A8YC-06 9 135073796 135073796 C T NTNG2 Silent p.F219F 0.80 TCGA-FR-A8YC-06 9 135202060 135202060 G A SETX Missense_Mutation p.P1642L 0.86 deleterious(0.04) benign(0.002) TCGA-FR-A8YC-06 9 136212027 136212027 G A MED22 Silent p.I68I 0.92 TCGA-FR-A8YC-06 9 136594963 136594963 C T SARDH Missense_Mutation p.R280Q 0.27 tolerated(0.59) benign(0.004) TCGA-FR-A8YC-06 9 136699454 136699454 G A VAV2 Missense_Mutation p.P130L 0.48 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 9 137710734 137710734 C T COL5A1 Missense_Mutation p.P1460L 0.21 unknown(0) TCGA-FR-A8YC-06 9 139927429 139927429 C T C9orf139 5'UTR 1.00 TCGA-FR-A8YC-06 9 140243717 140243717 G A EXD3 Silent p.L559L 0.87 TCGA-FR-A8YC-06 9 14722377 14722377 C T CER1 Silent p.R98R 0.86 TCGA-FR-A8YC-06 9 14747295 14747295 C T FREM1 Silent p.V1992V 0.82 TCGA-FR-A8YC-06 9 14748458 14748458 C T FREM1 Missense_Mutation p.G1913S 0.38 tolerated(0.35) benign(0.009) TCGA-FR-A8YC-06 9 14748524 14748524 G A FREM1 Missense_Mutation p.H1891Y 0.34 tolerated(0.46) benign(0.004) TCGA-FR-A8YC-06 9 14776067 14776067 G A FREM1 Missense_Mutation p.S1526F 0.88 deleterious(0) probably_damaging(0.927) TCGA-FR-A8YC-06 9 14824939 14824939 G A FREM1 Missense_Mutation p.P645S 0.81 tolerated(0.24) benign(0.176) TCGA-FR-A8YC-06 9 18574082 18574082 G A ADAMTSL1 Missense_Mutation p.D98N 0.84 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 9 19126117 19126117 G A PLIN2 Missense_Mutation p.P74L 0.75 deleterious(0.01) possibly_damaging(0.843) TCGA-FR-A8YC-06 9 20456773 20456773 G A MLLT3 Missense_Mutation p.P69S 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-FR-A8YC-06 9 20717857 20717857 C T FOCAD Missense_Mutation p.S41F 0.74 deleterious(0.02) possibly_damaging(0.748) TCGA-FR-A8YC-06 9 20976445 20976445 C T FOCAD Missense_Mutation p.L1387F 0.77 tolerated(0.13) benign(0.399) TCGA-FR-A8YC-06 9 21239826 21239826 T C IFNA14 Missense_Mutation p.T37A 0.87 tolerated(1) benign(0.008) TCGA-FR-A8YC-06 9 21367824 21367824 A C IFNA13 Missense_Mutation p.F62L 0.52 tolerated(0.19) benign(0.131) TCGA-FR-A8YC-06 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.67 TCGA-FR-A8YC-06 9 22451457 22451457 G A DMRTA1 Silent p.G354G 0.80 TCGA-FR-A8YC-06 9 22823440 22823440 C T RP11-399D6.2 RNA 0.82 TCGA-FR-A8YC-06 9 27169552 27169552 G A TEK Missense_Mutation p.D185N 0.85 tolerated(0.33) probably_damaging(0.944) TCGA-FR-A8YC-06 9 32632376 32632376 G A TAF1L Missense_Mutation p.R1068C 0.29 deleterious(0) probably_damaging(0.973) TCGA-FR-A8YC-06 9 35074207 35074207 G A FANCG Silent p.L589L 0.76 TCGA-FR-A8YC-06 9 36170133 36170133 C T CCIN Missense_Mutation p.R212W 0.80 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 9 368077 368077 G A DOCK8 Missense_Mutation p.R580Q 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-FR-A8YC-06 9 37592453 37592453 G A TOMM5 Missense_Mutation p.S26F 0.85 deleterious_low_confidence(0.03) probably_damaging(0.919) TCGA-FR-A8YC-06 9 37744587 37744587 C T FRMPD1 Missense_Mutation p.P853L 0.70 deleterious(0) possibly_damaging(0.847) TCGA-FR-A8YC-06 9 37745593 37745593 C T FRMPD1 Silent p.P1188P 0.24 TCGA-FR-A8YC-06 9 4823558 4823558 C T RCL1 Silent p.A49A 0.29 TCGA-FR-A8YC-06 9 6981112 6981112 C T KDM4C Missense_Mutation p.S370F 0.59 tolerated(0.07) benign(0.005) TCGA-FR-A8YC-06 9 72746489 72746489 G A MAMDC2 Missense_Mutation p.D319N 0.76 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 9 740809 740809 C T KANK1 Missense_Mutation p.H1191Y 0.90 deleterious(0.01) probably_damaging(0.943) TCGA-FR-A8YC-06 9 77378050 77378050 C T TRPM6 Silent p.R1179R 0.77 TCGA-FR-A8YC-06 9 77427259 77427259 G A TRPM6 Missense_Mutation p.H467Y 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-FR-A8YC-06 9 77448962 77448962 G A TRPM6 Silent p.I207I 0.21 TCGA-FR-A8YC-06 9 78547339 78547339 G A PCSK5 Silent p.T79T 0.24 TCGA-FR-A8YC-06 9 79954446 79954446 G A VPS13A Silent p.S2131S 0.89 TCGA-FR-A8YC-06 9 79954447 79954447 G A VPS13A Missense_Mutation p.V2132I 0.89 tolerated(0.46) benign(0.003) TCGA-FR-A8YC-06 9 84530850 84530850 G A SPATA31D5P RNA 0.80 TCGA-FR-A8YC-06 9 84547901 84547901 C T RP11-383M4.6 Intron 0.94 TCGA-FR-A8YC-06 9 86895736 86895736 C T SLC28A3 Missense_Mutation p.G570E 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 9 88938381 88938381 G A ZCCHC6 Silent p.L762L 0.32 TCGA-FR-A8YC-06 9 90220076 90220076 C T DAPK1 Silent p.I90I 0.16 TCGA-FR-A8YC-06 9 90322272 90322272 C T DAPK1 Missense_Mutation p.S1429F 0.35 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FR-A8YC-06 9 90501297 90501297 G A SPATA31E1 Missense_Mutation p.R632K 0.83 tolerated(1) benign(0.013) TCGA-FR-A8YC-06 9 91266950 91266950 G A RP13-60M5.2 RNA 0.87 TCGA-FR-A8YC-06 9 93375861 93375861 G A DIRAS2 Silent p.I83I 0.26 TCGA-FR-A8YC-06 9 99060701 99060701 G A HSD17B3 Silent p.F66F 0.92 TCGA-FR-A8YC-06 X 100486614 100486614 C T DRP2 5'UTR 0.85 TCGA-FR-A8YC-06 X 100667394 100667394 G A HNRNPH2 Missense_Mutation p.G140R 0.90 tolerated(0.07) probably_damaging(0.942) TCGA-FR-A8YC-06 X 10098002 10098002 G A WWC3 Nonsense_Mutation p.W813* 0.94 TCGA-FR-A8YC-06 X 101396150 101396150 C T TCEAL6 Missense_Mutation p.G52R 0.93 tolerated(0.14) possibly_damaging(0.654) TCGA-FR-A8YC-06 X 102332665 102332665 G A NXF3 Silent p.I487I 0.88 TCGA-FR-A8YC-06 X 104478535 104478535 C T IL1RAPL2 Silent p.S130S 0.88 TCGA-FR-A8YC-06 X 105152864 105152864 G A NRK Missense_Mutation p.G412R 0.90 tolerated(0.1) probably_damaging(0.999) TCGA-FR-A8YC-06 X 105277417 105277417 C T SERPINA7 3'UTR 0.90 TCGA-FR-A8YC-06 X 107858176 107858176 G A COL4A5 Missense_Mutation p.G811R 0.90 unknown(0) TCGA-FR-A8YC-06 X 108628481 108628481 G A GUCY2F Missense_Mutation p.T996I 0.93 deleterious(0.02) probably_damaging(0.998) TCGA-FR-A8YC-06 X 109694958 109694958 G A RGAG1 Silent p.A371A 0.50 TCGA-FR-A8YC-06 X 11187677 11187677 G A ARHGAP6 Missense_Mutation p.A586V 0.48 deleterious(0) possibly_damaging(0.596) TCGA-FR-A8YC-06 X 11207058 11207058 C T ARHGAP6 Silent p.A289A 0.53 TCGA-FR-A8YC-06 X 115585584 115585584 C T SLC6A14 Silent p.L460L 0.86 TCGA-FR-A8YC-06 X 115593961 115593961 C T CT83 Nonsense_Mutation p.W19* 0.84 TCGA-FR-A8YC-06 X 117032804 117032804 G A KLHL13 3'UTR 0.32 TCGA-FR-A8YC-06 X 117528020 117528020 C T WDR44 Missense_Mutation p.P277S 0.85 tolerated(0.47) benign(0.003) TCGA-FR-A8YC-06 X 117770316 117770316 C T DOCK11 Silent p.L1298L 0.94 TCGA-FR-A8YC-06 X 119211077 119211077 G A RHOXF2B Missense_Mutation p.P86S 0.42 tolerated(0.17) possibly_damaging(0.637) TCGA-FR-A8YC-06 X 119211087 119211087 G A RHOXF2B Silent p.G82G 0.13 TCGA-FR-A8YC-06 X 119243162 119243162 G A RHOXF1 Silent p.I181I 0.47 TCGA-FR-A8YC-06 X 124029907 124029907 G A TENM1 Missense_Mutation p.S134F 0.89 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A8YC-06 X 124097551 124097551 C T TENM1 Missense_Mutation p.E18K 0.45 deleterious_low_confidence(0.01) benign(0.348) TCGA-FR-A8YC-06 X 12516869 12516869 G A FRMPD4 Missense_Mutation p.G38R 0.92 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YC-06 X 12734422 12734422 A G FRMPD4 Missense_Mutation p.E615G 0.87 tolerated_low_confidence(0.05) benign(0) TCGA-FR-A8YC-06 X 12906102 12906102 G A TLR7 Silent p.V825V 0.48 TCGA-FR-A8YC-06 X 130415726 130415726 C T IGSF1 Missense_Mutation p.G480E 0.41 deleterious(0.02) benign(0.046) TCGA-FR-A8YC-06 X 131205181 131205181 C T MST4 Missense_Mutation p.R290C 0.39 deleterious(0) probably_damaging(0.962) TCGA-FR-A8YC-06 X 131206315 131206315 A T MST4 Missense_Mutation p.N318Y 0.79 deleterious(0.01) benign(0.406) TCGA-FR-A8YC-06 X 131212189 131212189 T G FRMD7 Missense_Mutation p.K619T 0.91 tolerated(0.09) probably_damaging(0.996) TCGA-FR-A8YC-06 X 131212190 131212190 T C FRMD7 Missense_Mutation p.K619E 0.91 deleterious(0.01) probably_damaging(0.991) TCGA-FR-A8YC-06 X 131231370 131231370 G A FRMD7 Missense_Mutation p.P70S 0.92 deleterious(0.02) probably_damaging(0.999) TCGA-FR-A8YC-06 X 13337352 13337352 T C ATXN3L Silent p.E234E 0.89 TCGA-FR-A8YC-06 X 135429656 135429656 C T GPR112 Missense_Mutation p.S1264F 0.88 tolerated(0.12) benign(0.009) TCGA-FR-A8YC-06 X 137717719 137717719 C T FGF13 Missense_Mutation p.R177Q 0.82 deleterious(0.01) possibly_damaging(0.79) TCGA-FR-A8YC-06 X 138680593 138680593 C T MCF2 Missense_Mutation p.R710Q 0.36 deleterious(0) probably_damaging(0.994) TCGA-FR-A8YC-06 X 1407682 1407682 C T CSF2RA Missense_Mutation p.S125F 0.44 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 X 140996416 140996416 C T MAGEC1 Missense_Mutation p.H1076Y 0.42 tolerated(0.06) unknown(0) TCGA-FR-A8YC-06 X 148038108 148038108 G A AFF2 Missense_Mutation p.E845K 0.95 deleterious(0) benign(0.371) TCGA-FR-A8YC-06 X 14930435 14930435 C T MOSPD2 Missense_Mutation p.A315V 0.81 tolerated(0.29) benign(0.001) TCGA-FR-A8YC-06 X 150908034 150908034 G A CNGA2 Silent p.R68R 1.00 TCGA-FR-A8YC-06 X 151821814 151821814 C T GABRQ 3'UTR 0.77 TCGA-FR-A8YC-06 X 153133862 153133862 G A L1CAM Missense_Mutation p.S533F 0.88 deleterious(0.02) possibly_damaging(0.781) TCGA-FR-A8YC-06 X 1537995 1537995 G A ASMTL Nonsense_Mutation p.Q420* 0.40 TCGA-FR-A8YC-06 X 153940937 153940937 A G GAB3 Silent p.R212R 0.92 TCGA-FR-A8YC-06 X 154159916 154159916 G A F8 Missense_Mutation p.R717W 0.37 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YC-06 X 155149530 155149530 A T VAMP7 Intron 0.15 TCGA-FR-A8YC-06 X 17043232 17043232 C T REPS2 Silent p.S199S 0.89 TCGA-FR-A8YC-06 X 17818566 17818566 C T RAI2 Missense_Mutation p.R522Q 0.42 deleterious(0) unknown(0) TCGA-FR-A8YC-06 X 18343032 18343032 G C SCML2 Missense_Mutation p.R53G 0.97 deleterious(0) probably_damaging(0.984) TCGA-FR-A8YC-06 X 18668608 18668608 C T CDKL5 Missense_Mutation p.S959F 0.43 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FR-A8YC-06 X 23019184 23019184 G A DDX53 Missense_Mutation p.G337E 0.92 tolerated(1) benign(0.044) TCGA-FR-A8YC-06 X 23740069 23740069 C T ACOT9 Missense_Mutation p.D173N 0.89 deleterious(0) probably_damaging(0.99) TCGA-FR-A8YC-06 X 23802000 23802000 G A SAT1 Missense_Mutation p.G68R 0.36 deleterious(0) possibly_damaging(0.703) TCGA-FR-A8YC-06 X 23802001 23802001 G A SAT1 Splice_Site p.X68_splice 0.38 TCGA-FR-A8YC-06 X 26212114 26212114 G A MAGEB6 Missense_Mutation p.D51N 0.46 tolerated(0.53) benign(0.135) TCGA-FR-A8YC-06 X 2832782 2832782 C T ARSD Intron 0.33 TCGA-FR-A8YC-06 X 30578376 30578376 C T CXorf21 Missense_Mutation p.E33K 0.49 tolerated(0.32) benign(0.004) TCGA-FR-A8YC-06 X 3227966 3227966 T C MXRA5 Missense_Mutation p.I2760V 0.92 tolerated(0.16) benign(0.049) TCGA-FR-A8YC-06 X 3236029 3236029 G A MXRA5 Missense_Mutation p.P1898L 1.00 tolerated(0.07) possibly_damaging(0.874) TCGA-FR-A8YC-06 X 3241070 3241070 C T MXRA5 Missense_Mutation p.E886K 0.86 tolerated(0.31) benign(0.016) TCGA-FR-A8YC-06 X 3248228 3248228 G A MXRA5 Silent p.F180F 0.43 TCGA-FR-A8YC-06 X 34961876 34961876 G A FAM47B Missense_Mutation p.E310K 0.37 tolerated(0.14) possibly_damaging(0.721) TCGA-FR-A8YC-06 X 37027203 37027203 G A FAM47C Silent p.E240E 0.41 TCGA-FR-A8YC-06 X 37027291 37027291 C T FAM47C Missense_Mutation p.L270F 0.87 deleterious(0.01) benign(0.336) TCGA-FR-A8YC-06 X 37028949 37028949 C T FAM47C Silent p.S822S 0.35 TCGA-FR-A8YC-06 X 37850348 37850348 G A CXorf27 Missense_Mutation p.E86K 0.46 deleterious(0.01) benign(0.389) TCGA-FR-A8YC-06 X 47074295 47074295 C T UBA1 Silent p.V1048V 0.31 TCGA-FR-A8YC-06 X 48624270 48624270 C T GLOD5 Missense_Mutation p.P32S 0.93 tolerated(0.48) benign(0.02) TCGA-FR-A8YC-06 X 48687977 48687977 C T ERAS Silent p.L148L 1.00 TCGA-FR-A8YC-06 X 48887998 48887998 C A TFE3 Nonsense_Mutation p.E467* 0.88 TCGA-FR-A8YC-06 X 52825621 52825621 C T SPANXN5 Silent p.K42K 0.86 TCGA-FR-A8YC-06 X 54987259 54987259 C T PFKFB1 Silent p.R105R 0.32 TCGA-FR-A8YC-06 X 55650719 55650719 G A FOXR2 Missense_Mutation p.R192K 0.44 deleterious(0.02) probably_damaging(0.938) TCGA-FR-A8YC-06 X 601797 601797 G A SHOX Missense_Mutation p.G203E 0.40 deleterious(0.01) possibly_damaging(0.804) TCGA-FR-A8YC-06 X 63410821 63410821 G A AMER1 Silent p.L782L 0.47 TCGA-FR-A8YC-06 X 65486411 65486411 C T HEPH Missense_Mutation p.A1179V 0.90 tolerated_low_confidence(1) benign(0.001) TCGA-FR-A8YC-06 X 69419686 69419686 G A DGAT2L6 Missense_Mutation p.R74Q 0.83 deleterious(0.04) probably_damaging(0.955) TCGA-FR-A8YC-06 X 69504449 69504449 G A RAB41 Missense_Mutation p.E208K 0.92 tolerated(1) benign(0.002) TCGA-FR-A8YC-06 X 71877488 71877488 G A PHKA1 Missense_Mutation p.R290C 1.00 deleterious(0) probably_damaging(0.976) TCGA-FR-A8YC-06 X 71886069 71886069 G A PHKA1 Missense_Mutation p.P266S 0.97 deleterious(0) probably_damaging(1) TCGA-FR-A8YC-06 X 72433864 72433864 G A NAP1L2 Silent p.I155I 0.92 TCGA-FR-A8YC-06 X 73045965 73045965 G A XIST RNA 0.82 TCGA-FR-A8YC-06 X 73046579 73046579 C T XIST RNA 0.87 TCGA-FR-A8YC-06 X 73072304 73072304 C T XIST RNA 0.90 TCGA-FR-A8YC-06 X 77528647 77528647 G A CYSLTR1 Silent p.I199I 0.86 TCGA-FR-A8YC-06 X 78426877 78426877 C T GPR174 Missense_Mutation p.R125C 0.88 tolerated(0.07) possibly_damaging(0.863) TCGA-FR-A8YC-06 X 79286521 79286521 C T TBX22 Missense_Mutation p.L492F 0.37 tolerated(0.62) benign(0.008) TCGA-FR-A8YC-06 X 8138098 8138098 G A VCX2 Missense_Mutation p.S132F 0.90 tolerated_low_confidence(0.13) unknown(0) TCGA-FR-A8YC-06 X 83128642 83128642 A T CYLC1 Missense_Mutation p.D309V 1.00 deleterious(0.05) unknown(0) TCGA-FR-A8YC-06 X 84363255 84363255 T C SATL1 Silent p.Q240Q 0.84 TCGA-FR-A8YC-06 X 8767047 8767047 C T FAM9A Silent p.L60L 0.72 TCGA-FR-A8YD-06 10 50819807 50819807 G A SLC18A3 Missense_Mutation p.G341S 0.33 deleterious(0) probably_damaging(1) TCGA-FR-A8YD-06 10 70507015 70507015 C T CCAR1 Nonsense_Mutation p.Q206* 0.46 TCGA-FR-A8YD-06 10 76603088 76603088 G A KAT6B Missense_Mutation p.R158H 0.43 probably_damaging(0.992) TCGA-FR-A8YD-06 11 104879551 104879551 T G CASP5 Missense_Mutation p.K68T 0.38 tolerated(0.1) benign(0.039) TCGA-FR-A8YD-06 11 119183011 119183011 G A MCAM Missense_Mutation p.S330L 0.30 tolerated(0.08) benign(0.005) TCGA-FR-A8YD-06 11 124413134 124413134 C T OR8B12 Silent p.V139V 0.18 TCGA-FR-A8YD-06 11 1265033 1265033 C T MUC5B Missense_Mutation p.T2308M 0.06 unknown(0) TCGA-FR-A8YD-06 11 4870050 4870050 C A OR51S1 Missense_Mutation p.R130L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YD-06 11 65402998 65402998 A - PCNXL3 Splice_Site p.X1729_splice 0.29 TCGA-FR-A8YD-06 12 10583828 10583828 C A KLRC2 Splice_Site p.X195_splice 0.42 TCGA-FR-A8YD-06 12 54635543 54635543 C A CBX5 Missense_Mutation p.S191I 0.08 deleterious_low_confidence(0.02) benign(0.403) TCGA-FR-A8YD-06 12 54674603 54674603 A C HNRNPA1 Silent p.S4S 0.33 TCGA-FR-A8YD-06 12 56477588 56477588 T G ERBB3 Missense_Mutation p.Y46D 0.23 deleterious(0) benign(0.334) TCGA-FR-A8YD-06 12 56549346 56549346 G A MYL6B Missense_Mutation p.A164T 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-FR-A8YD-06 12 9906115 9906115 T C CD69 Missense_Mutation p.K188E 0.34 tolerated(0.4) benign(0.052) TCGA-FR-A8YD-06 14 21762930 21762930 G A RPGRIP1 Silent p.V60V 0.25 TCGA-FR-A8YD-06 14 21876626 21876626 G A CHD8 Missense_Mutation p.H859Y 0.40 deleterious(0.03) benign(0.403) TCGA-FR-A8YD-06 14 53385842 53385842 A - FERMT2 Frame_Shift_Del p.F130Lfs*12 0.14 TCGA-FR-A8YD-06 14 73980930 73980930 G C HEATR4 Missense_Mutation p.P407A 0.21 deleterious(0.04) possibly_damaging(0.678) TCGA-FR-A8YD-06 15 50788269 50788269 A C USP8 Missense_Mutation p.K961N 0.17 deleterious(0.03) benign(0.119) TCGA-FR-A8YD-06 15 55670521 55670521 C T CCPG1 Missense_Mutation p.E77K 0.26 tolerated(0.08) possibly_damaging(0.767) TCGA-FR-A8YD-06 15 63092603 63092603 G T TLN2 Missense_Mutation p.A2091S 0.31 deleterious(0.04) probably_damaging(0.97) TCGA-FR-A8YD-06 15 63092604 63092604 C T TLN2 Missense_Mutation p.A2091V 0.31 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YD-06 15 73566267 73566267 A G NEO1 Silent p.P1027P 0.66 TCGA-FR-A8YD-06 15 78805753 78805753 C G HYKK Missense_Mutation p.S108C 0.23 deleterious(0.02) possibly_damaging(0.611) TCGA-FR-A8YD-06 15 86814928 86814928 G A AGBL1 Missense_Mutation p.C643Y 0.19 deleterious(0) possibly_damaging(0.907) TCGA-FR-A8YD-06 15 90771424 90771424 G A SEMA4B Missense_Mutation p.S688N 0.44 tolerated(0.47) benign(0.117) TCGA-FR-A8YD-06 15 93595582 93595582 C T RGMA Missense_Mutation p.D104N 0.18 tolerated(0.63) possibly_damaging(0.79) TCGA-FR-A8YD-06 16 10867976 10867976 C G TVP23A Missense_Mutation p.G82R 0.23 deleterious(0) probably_damaging(1) TCGA-FR-A8YD-06 16 27720027 27720027 A G KIAA0556 Missense_Mutation p.D464G 0.34 tolerated(0.4) benign(0.017) TCGA-FR-A8YD-06 16 69729267 69729267 C T NFAT5 Missense_Mutation p.S1548F 0.32 benign(0.379) TCGA-FR-A8YD-06 16 70557341 70557341 G A COG4 Missense_Mutation p.L36F 0.09 tolerated_low_confidence(0.1) benign(0.002) TCGA-FR-A8YD-06 16 84270531 84270531 C G KCNG4 Missense_Mutation p.Q187H 0.25 tolerated(0.11) benign(0.001) TCGA-FR-A8YD-06 17 10400739 10400739 C G MYH1 Missense_Mutation p.E1466Q 0.15 deleterious(0.02) probably_damaging(1) TCGA-FR-A8YD-06 17 10409215 10409215 C T MYH1 Silent p.Q696Q 0.39 TCGA-FR-A8YD-06 17 29559729 29559729 T G NF1 Nonsense_Mutation p.L1109* 0.58 TCGA-FR-A8YD-06 17 29559848 29559848 A G NF1 Missense_Mutation p.M1149V 0.24 deleterious(0) possibly_damaging(0.448) TCGA-FR-A8YD-06 17 41003629 41003629 G A AOC3 Missense_Mutation p.R90Q 0.26 tolerated(0.37) benign(0.003) TCGA-FR-A8YD-06 17 72540980 72540980 C G CD300C Missense_Mutation p.W56C 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A8YD-06 17 72610098 72610098 G A CD300E Missense_Mutation p.L155F 0.44 tolerated(0.54) benign(0.025) TCGA-FR-A8YD-06 17 74289960 74289960 C T QRICH2 Missense_Mutation p.R117Q 0.36 tolerated(1) benign(0) TCGA-FR-A8YD-06 17 77923535 77923535 A C TBC1D16 Missense_Mutation p.S463A 0.35 tolerated(0.69) benign(0.002) TCGA-FR-A8YD-06 18 43666437 43666437 G C ATP5A1 Missense_Mutation p.F400L 0.16 deleterious_low_confidence(0) benign(0.203) TCGA-FR-A8YD-06 18 54446750 54446750 G A WDR7 Silent p.L1012L 0.34 TCGA-FR-A8YD-06 19 13323294 13323294 C G CACNA1A Silent p.V2031V 0.36 TCGA-FR-A8YD-06 19 21265011 21265011 C T ZNF714 5'UTR 0.20 TCGA-FR-A8YD-06 19 37310650 37310650 C G ZNF790 Missense_Mutation p.G199A 0.39 tolerated(0.07) benign(0) TCGA-FR-A8YD-06 19 37580027 37580027 C T ZNF420 Missense_Mutation p.R3W 0.36 deleterious(0.03) benign(0.008) TCGA-FR-A8YD-06 19 45028201 45028201 A T CEACAM20 RNA 0.39 TCGA-FR-A8YD-06 19 49299692 49299692 T A BCAT2 Missense_Mutation p.E378V 0.31 deleterious(0.01) benign(0.032) TCGA-FR-A8YD-06 19 58049118 58049118 G C ZNF549 Missense_Mutation p.R249P 0.38 deleterious(0.01) benign(0.003) TCGA-FR-A8YD-06 19 5844133 5844133 G A FUT3 Missense_Mutation p.R240W 0.31 deleterious(0) possibly_damaging(0.828) TCGA-FR-A8YD-06 1 118042086 118042086 C T MAN1A2 Silent p.I529I 0.38 TCGA-FR-A8YD-06 1 155258293 155258293 G A HCN3 3'UTR 0.20 TCGA-FR-A8YD-06 1 167095181 167095181 G A DUSP27 Silent p.L271L 0.17 TCGA-FR-A8YD-06 1 169697239 169697239 G A SELE Silent p.G413G 0.17 TCGA-FR-A8YD-06 1 179322939 179322939 G A SOAT1 3'UTR 0.20 TCGA-FR-A8YD-06 1 203012555 203012555 A G PPFIA4 Missense_Mutation p.M89V 0.65 tolerated(0.72) benign(0.001) TCGA-FR-A8YD-06 1 205027333 205027333 G A CNTN2 Missense_Mutation p.M80I 0.26 tolerated(1) benign(0.001) TCGA-FR-A8YD-06 1 247921015 247921015 G T OR1C1 Missense_Mutation p.Q232K 0.41 tolerated(1) benign(0.003) TCGA-FR-A8YD-06 1 43915826 43915826 C T SZT2 Missense_Mutation p.S3323F 0.39 tolerated(0.48) probably_damaging(0.93) TCGA-FR-A8YD-06 1 75596523 75596523 C G LHX8 Intron 0.21 TCGA-FR-A8YD-06 20 33337802 33337802 G C NCOA6 Missense_Mutation p.N732K 0.06 possibly_damaging(0.784) TCGA-FR-A8YD-06 20 62518914 62518914 C - TPD52L2 Intron 0.30 TCGA-FR-A8YD-06 20 8862323 8862323 G A PLCB1 Missense_Mutation p.E1160K 0.49 deleterious(0.03) probably_damaging(0.967) TCGA-FR-A8YD-06 21 38538013 38538013 A T TTC3 Missense_Mutation p.D1166V 0.36 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YD-06 21 43963599 43963599 T G SLC37A1 Missense_Mutation p.L206W 0.04 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YD-06 22 24034774 24034774 C T RGL4 Intron 0.16 TCGA-FR-A8YD-06 22 24236795 24236795 G A AP000350.4 3'UTR 0.80 TCGA-FR-A8YD-06 22 37528423 37528423 C G IL2RB Splice_Site p.X301_splice 0.11 TCGA-FR-A8YD-06 22 45595864 45595864 A G KIAA0930 Missense_Mutation p.F307S 0.15 deleterious(0.04) possibly_damaging(0.767) TCGA-FR-A8YD-06 22 47095224 47095224 C A CERK Missense_Mutation p.R310I 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A8YD-06 2 124999835 124999835 G T CNTNAP5 Silent p.L82L 0.36 TCGA-FR-A8YD-06 2 179643600 179643600 C T TTN Splice_Site p.X1403_splice 0.29 TCGA-FR-A8YD-06 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.28 deleterious(0) probably_damaging(0.96) TCGA-FR-A8YD-06 2 28210861 28210861 G A BRE Nonsense_Mutation p.W69* 0.40 TCGA-FR-A8YD-06 2 74657646 74657647 - TT RTKN Splice_Site p.X125_splice 0.12 TCGA-FR-A8YD-06 2 75196717 75196717 C T POLE4 3'UTR 0.28 TCGA-FR-A8YD-06 3 108308210 108308210 C T KIAA1524 Missense_Mutation p.A5T 0.57 tolerated(1) possibly_damaging(0.713) TCGA-FR-A8YD-06 3 113005657 113005657 C T BOC Missense_Mutation p.S1098F 0.29 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-FR-A8YD-06 3 114057882 114057882 G T ZBTB20 Missense_Mutation p.D732E 0.45 tolerated_low_confidence(0.1) probably_damaging(0.983) TCGA-FR-A8YD-06 3 13679235 13679235 G T FBLN2 Missense_Mutation p.G1171V 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A8YD-06 3 151532010 151532010 T C AADAC Silent p.Y20Y 0.75 TCGA-FR-A8YD-06 3 160253596 160253596 C T KPNA4 Silent p.V68V 0.53 TCGA-FR-A8YD-06 3 48538697 48538697 C T SHISA5 Missense_Mutation p.G36R 0.47 deleterious(0) probably_damaging(0.989) TCGA-FR-A8YD-06 3 55513483 55513483 G T WNT5A Missense_Mutation p.H84N 0.04 deleterious(0.02) benign(0.009) TCGA-FR-A8YD-06 4 52926976 52926976 C T SPATA18 Silent p.I74I 0.21 TCGA-FR-A8YD-06 4 52926990 52926990 T A SPATA18 Nonsense_Mutation p.L79* 0.20 TCGA-FR-A8YD-06 4 71020053 71020053 C G C4orf40 5'UTR 0.39 TCGA-FR-A8YD-06 4 79831975 79831975 G C BMP2K Missense_Mutation p.E758D 0.31 tolerated_low_confidence(0.11) unknown(0) TCGA-FR-A8YD-06 5 114879075 114879076 - T FEM1C Frame_Shift_Ins p.T39Nfs*17 0.30 TCGA-FR-A8YD-06 5 140221234 140221234 G A PCDHA8 Missense_Mutation p.V110M 0.20 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FR-A8YD-06 5 140788142 140788142 G A PCDHGB6 Missense_Mutation p.D125N 0.23 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YD-06 5 151771926 151771926 T C NMUR2 Silent p.P358P 0.19 TCGA-FR-A8YD-06 5 178030655 178030655 A C CLK4 Missense_Mutation p.L470W 0.16 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YD-06 5 78376590 78376590 C G BHMT2 Missense_Mutation p.I113M 0.31 tolerated(0.1) benign(0.057) TCGA-FR-A8YD-06 5 848764 848764 C T ZDHHC11 Silent p.G78G 0.53 TCGA-FR-A8YD-06 5 93076456 93076456 C A POU5F2 Missense_Mutation p.A272S 0.43 tolerated(0.4) benign(0.364) TCGA-FR-A8YD-06 6 16306848 16306848 T C ATXN1 Silent p.R720R 0.16 TCGA-FR-A8YD-06 6 16306849 16306849 C A ATXN1 Missense_Mutation p.R720I 0.18 deleterious(0.04) probably_damaging(0.965) TCGA-FR-A8YD-06 6 169982990 169982990 C T WDR27 Missense_Mutation p.R822Q 0.45 deleterious(0.01) possibly_damaging(0.803) TCGA-FR-A8YD-06 6 32036637 32036637 C A TNXB Missense_Mutation p.G1955V 0.16 probably_damaging(0.999) TCGA-FR-A8YD-06 6 33133725 33133725 C T COL11A2 Missense_Mutation p.G1403S 0.19 unknown(0) TCGA-FR-A8YD-06 6 52009174 52009174 T A MIR206 RNA 0.21 TCGA-FR-A8YD-06 6 57012710 57012710 G A ZNF451 Silent p.R609R 0.15 TCGA-FR-A8YD-06 6 84117546 84117546 C T ME1 Silent p.Q51Q 0.63 TCGA-FR-A8YD-06 7 100663497 100663497 G T MUC17 Missense_Mutation p.Q27H 0.64 benign(0.009) TCGA-FR-A8YD-06 7 121684610 121684610 G T PTPRZ1 Missense_Mutation p.E2024D 0.59 tolerated(0.15) benign(0.003) TCGA-FR-A8YD-06 7 141630019 141630019 C A CLEC5A Splice_Site p.X151_splice 0.13 TCGA-FR-A8YD-06 7 27194686 27194686 G T HOXA7 Missense_Mutation p.Q179K 0.39 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YD-06 7 27835783 27835783 C T TAX1BP1 Missense_Mutation p.T528I 0.66 tolerated(0.09) benign(0.005) TCGA-FR-A8YD-06 7 73115158 73115158 C G STX1A Missense_Mutation p.D231H 0.42 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YD-06 8 110308611 110308611 A G NUDCD1 Splice_Site p.X153_splice 0.13 TCGA-FR-A8YD-06 8 110534997 110534997 T C PKHD1L1 Missense_Mutation p.S4070P 0.23 tolerated(0.19) benign(0.228) TCGA-FR-A8YD-06 8 110534998 110534998 C A PKHD1L1 Missense_Mutation p.S4070Y 0.23 tolerated(0.05) benign(0.003) TCGA-FR-A8YD-06 8 57353979 57353979 C G PENK Missense_Mutation p.R219P 0.21 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YD-06 8 90971067 90971067 G T NBN Missense_Mutation p.T337N 0.28 deleterious(0) benign(0.288) TCGA-FR-A8YD-06 9 107594971 107594971 C G ABCA1 Missense_Mutation p.A465P 0.37 tolerated(0.06) benign(0.004) TCGA-FR-A8YD-06 9 114090059 114090059 A C OR2K2 Missense_Mutation p.F219V 0.34 deleterious(0.01) probably_damaging(0.909) TCGA-FR-A8YD-06 9 117849066 117849066 C A TNC Missense_Mutation p.C315F 0.31 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YD-06 9 127110095 127110095 C A NEK6 Silent p.S309S 0.38 TCGA-FR-A8YD-06 9 33466207 33466207 C G NOL6 Missense_Mutation p.E742D 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-FR-A8YD-06 9 79117582 79117582 C G GCNT1 Missense_Mutation p.N95K 0.29 deleterious(0.03) benign(0.211) TCGA-FR-A8YD-06 X 118585814 118585814 C A SLC25A43 Intron 0.54 TCGA-FR-A8YD-06 X 119582959 119582959 A C LAMP2 Missense_Mutation p.L141W 0.40 tolerated(0.18) possibly_damaging(0.84) TCGA-FR-A8YD-06 X 123517706 123517706 C T TENM1 Missense_Mutation p.D2359N 0.42 tolerated(0.28) benign(0.003) TCGA-FR-A8YD-06 X 129156878 129156878 T C BCORL1 Missense_Mutation p.L1205S 0.41 possibly_damaging(0.451) TCGA-FR-A8YD-06 X 13635875 13635875 G A EGFL6 Missense_Mutation p.V269I 0.23 tolerated(0.84) benign(0.009) TCGA-FR-A8YD-06 X 148062280 148062280 A G AFF2 Missense_Mutation p.K1195E 0.35 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YD-06 X 153220923 153220923 T C HCFC1 Missense_Mutation p.D976G 0.44 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-FR-A8YD-06 X 153587415 153587415 A T FLNA Missense_Mutation p.F1471I 0.06 deleterious(0) probably_damaging(0.993) TCGA-FR-A8YD-06 X 20033399 20033399 C G MAP7D2 Missense_Mutation p.R564P 0.34 deleterious(0) unknown(0) TCGA-FR-A8YD-06 X 44929117 44929117 C G KDM6A Missense_Mutation p.N739K 0.39 deleterious(0.02) benign(0.06) TCGA-FR-A8YD-06 X 5811688 5811688 G T NLGN4X Missense_Mutation p.P541T 0.26 tolerated(0.06) possibly_damaging(0.473) TCGA-FR-A8YD-06 X 63488585 63488585 G T MTMR8 Silent p.S649S 0.31 TCGA-FR-A8YD-06 X 79964984 79964984 A G BRWD3 Silent p.N806N 0.30 TCGA-FR-A8YD-06 X 84585953 84585953 A G POF1B Splice_Site p.X285_splice 0.22 TCGA-FR-A8YE-06 10 116014808 116014808 G A VWA2 Splice_Site p.X87_splice 0.14 TCGA-FR-A8YE-06 10 13174121 13174121 C T OPTN Missense_Mutation p.H486Y 0.08 deleterious(0.02) benign(0.048) TCGA-FR-A8YE-06 10 53814316 53814316 G A PRKG1 Missense_Mutation p.G279R 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 10 61833144 61833144 C T ANK3 Missense_Mutation p.D2499N 0.08 probably_damaging(0.977) TCGA-FR-A8YE-06 10 61847974 61847974 G A ANK3 Silent p.T1157T 0.08 TCGA-FR-A8YE-06 10 81697941 81697941 G A SFTPD Silent p.F265F 0.09 TCGA-FR-A8YE-06 10 96447900 96447900 G A CYP2C18 Missense_Mutation p.G117E 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-FR-A8YE-06 11 101765679 101765679 C T ANGPTL5 Missense_Mutation p.D260N 0.12 deleterious(0.04) probably_damaging(0.959) TCGA-FR-A8YE-06 11 11985900 11985900 T G DKK3 3'UTR 0.10 TCGA-FR-A8YE-06 11 122678785 122678785 C T UBASH3B Silent p.I571I 0.10 TCGA-FR-A8YE-06 11 123811188 123811188 C T OR4D5 Silent p.L289L 0.06 TCGA-FR-A8YE-06 11 123847940 123847940 C T OR10S1 Silent p.R153R 0.11 TCGA-FR-A8YE-06 11 16822601 16822601 C T PLEKHA7 Missense_Mutation p.E777K 0.07 deleterious(0.01) possibly_damaging(0.906) TCGA-FR-A8YE-06 11 17530966 17530966 C T USH1C Silent p.K650K 0.08 TCGA-FR-A8YE-06 11 21581803 21581803 G A NELL1 Missense_Mutation p.G619S 0.11 tolerated(0.1) benign(0.251) TCGA-FR-A8YE-06 11 40137068 40137068 C T LRRC4C Missense_Mutation p.E259K 0.07 deleterious(0.03) possibly_damaging(0.854) TCGA-FR-A8YE-06 11 47711935 47711935 G A AGBL2 Missense_Mutation p.P442S 0.10 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YE-06 11 5344684 5344684 G A OR51B2 Missense_Mutation p.P282S 0.11 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YE-06 11 5528775 5528775 G A UBQLN3 3'UTR 0.14 TCGA-FR-A8YE-06 11 55761301 55761301 G A OR5F1 Silent p.S267S 0.07 TCGA-FR-A8YE-06 11 55761952 55761952 C T OR5F1 Silent p.R50R 0.13 TCGA-FR-A8YE-06 11 55861129 55861129 G A OR8I2 Missense_Mutation p.G116R 0.09 deleterious(0) possibly_damaging(0.857) TCGA-FR-A8YE-06 11 55890100 55890100 G A OR8H3 Silent p.A84A 0.11 TCGA-FR-A8YE-06 11 56128160 56128160 C T OR8J1 Silent p.S146S 0.10 TCGA-FR-A8YE-06 11 57003312 57003312 C T APLNR 3'UTR 0.08 TCGA-FR-A8YE-06 11 57505447 57505447 T G TMX2 Missense_Mutation p.F105V 0.10 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 11 59608696 59608696 C T GIF Missense_Mutation p.D205N 0.09 tolerated(0.54) benign(0.001) TCGA-FR-A8YE-06 11 62545512 62545512 C T TAF6L Silent p.L99L 0.07 TCGA-FR-A8YE-06 11 65374279 65374279 G A MAP3K11 Intron 0.11 TCGA-FR-A8YE-06 11 65394930 65394930 C T PCNXL3 Silent p.F1193F 0.14 TCGA-FR-A8YE-06 11 6592086 6592086 G A DNHD1 Silent p.R4448R 0.08 TCGA-FR-A8YE-06 11 66102582 66102582 G A RIN1 Missense_Mutation p.P230S 0.10 tolerated(0.09) probably_damaging(0.998) TCGA-FR-A8YE-06 11 69514296 69514296 C T FGF19 Missense_Mutation p.D129N 0.09 deleterious(0.02) possibly_damaging(0.788) TCGA-FR-A8YE-06 11 71726914 71726914 G A NUMA1 Silent p.A545A 0.07 TCGA-FR-A8YE-06 11 76370602 76370602 C T LRRC32 3'UTR 0.15 TCGA-FR-A8YE-06 11 77378171 77378171 C T RSF1 Missense_Mutation p.G1373R 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A8YE-06 11 77672166 77672166 G A INTS4 Missense_Mutation p.H164Y 0.10 deleterious(0.01) possibly_damaging(0.649) TCGA-FR-A8YE-06 11 7949948 7949948 C T OR10A6 Missense_Mutation p.E88K 0.11 tolerated(0.23) benign(0.009) TCGA-FR-A8YE-06 11 88027243 88027243 G A CTSC Silent p.I441I 0.13 TCGA-FR-A8YE-06 12 100466570 100466570 G A UHRF1BP1L Missense_Mutation p.R477C 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-FR-A8YE-06 12 10961766 10961766 G A TAS2R9 Silent p.F303F 0.09 TCGA-FR-A8YE-06 12 110765587 110765587 C T ATP2A2 Missense_Mutation p.S287F 0.08 deleterious(0.05) possibly_damaging(0.898) TCGA-FR-A8YE-06 12 110778503 110778503 C T ATP2A2 Missense_Mutation p.P601S 0.09 deleterious(0.01) probably_damaging(1) TCGA-FR-A8YE-06 12 113446995 113446995 C T OAS2 Missense_Mutation p.P667S 0.07 tolerated(0.42) benign(0.005) TCGA-FR-A8YE-06 12 113756796 113756796 G A SLC8B1 Silent p.L259L 0.08 TCGA-FR-A8YE-06 12 118517361 118517361 A G VSIG10 Missense_Mutation p.F239L 0.09 tolerated(1) benign(0.002) TCGA-FR-A8YE-06 12 119942987 119942987 G A CCDC60 Missense_Mutation p.M254I 0.08 tolerated(0.33) probably_damaging(0.996) TCGA-FR-A8YE-06 12 120518742 120518742 C T CCDC64 Missense_Mutation p.L454F 0.14 deleterious(0.04) possibly_damaging(0.817) TCGA-FR-A8YE-06 12 120518744 120518744 C T CCDC64 Silent p.L454L 0.14 TCGA-FR-A8YE-06 12 122091101 122091101 G A MORN3 Silent p.F176F 0.17 TCGA-FR-A8YE-06 12 12278357 12278357 C T LRP6 Missense_Mutation p.R1441Q 0.09 tolerated(0.34) possibly_damaging(0.716) TCGA-FR-A8YE-06 12 123187167 123187167 G C HCAR2 Missense_Mutation p.R222G 0.07 tolerated(0.06) benign(0.037) TCGA-FR-A8YE-06 12 123875213 123875213 T G SETD8 Missense_Mutation p.Y57D 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.805) TCGA-FR-A8YE-06 12 126138387 126138387 G A TMEM132B Missense_Mutation p.E790K 0.10 tolerated(0.08) benign(0.115) TCGA-FR-A8YE-06 12 129569223 129569223 A C TMEM132D Missense_Mutation p.F490V 0.10 deleterious(0) probably_damaging(0.976) TCGA-FR-A8YE-06 12 12976881 12976881 C T DDX47 Silent p.T276T 0.09 TCGA-FR-A8YE-06 12 132512761 132512761 C T EP400 Missense_Mutation p.S1770F 0.12 unknown(0) TCGA-FR-A8YE-06 12 13717283 13717283 G A GRIN2B Silent p.I963I 0.12 TCGA-FR-A8YE-06 12 18854590 18854590 C T PLCZ1 Intron 0.19 TCGA-FR-A8YE-06 12 20890187 20890187 A G SLCO1C1 Missense_Mutation p.N510S 0.08 tolerated(0.92) benign(0.002) TCGA-FR-A8YE-06 12 20893231 20893231 C T SLCO1C1 Silent p.F554F 0.11 TCGA-FR-A8YE-06 12 25307307 25307307 C T CASC1 Silent p.E128E 0.10 TCGA-FR-A8YE-06 12 27470907 27470907 C T STK38L Missense_Mutation p.P345L 0.09 deleterious(0.02) possibly_damaging(0.521) TCGA-FR-A8YE-06 12 49663387 49663387 C T TUBA1C Missense_Mutation p.S48F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FR-A8YE-06 12 51736375 51736375 C T CELA1 Missense_Mutation p.D104N 0.06 tolerated(1) benign(0) TCGA-FR-A8YE-06 12 51868881 51868881 G A SLC4A8 Missense_Mutation p.G688E 0.15 deleterious(0.03) probably_damaging(1) TCGA-FR-A8YE-06 12 55759200 55759200 C T OR6C75 Silent p.F102F 0.08 TCGA-FR-A8YE-06 12 6127642 6127642 G A VWF Missense_Mutation p.P1648S 0.11 deleterious(0.03) probably_damaging(0.965) TCGA-FR-A8YE-06 12 6427986 6427986 G A PLEKHG6 Missense_Mutation p.V451I 0.17 tolerated(0.22) benign(0.02) TCGA-FR-A8YE-06 12 70003756 70003756 C T LRRC10 3'UTR 0.19 TCGA-FR-A8YE-06 12 86198701 86198701 C T RASSF9 Missense_Mutation p.E363K 0.10 tolerated(0.25) benign(0.155) TCGA-FR-A8YE-06 12 9021153 9021153 C T A2ML1 Missense_Mutation p.S1361F 0.10 deleterious(0.01) benign(0.418) TCGA-FR-A8YE-06 12 94975836 94975836 G A TMCC3 Missense_Mutation p.S186L 0.17 deleterious(0.02) benign(0.004) TCGA-FR-A8YE-06 13 114307672 114307672 C T ATP4B Missense_Mutation p.A107T 0.09 tolerated(0.57) benign(0.008) TCGA-FR-A8YE-06 13 20048187 20048187 C T TPTE2 Missense_Mutation p.D87N 0.09 deleterious(0.02) benign(0.242) TCGA-FR-A8YE-06 13 23911827 23911827 G A SACS Missense_Mutation p.P2063L 0.11 probably_damaging(0.998) TCGA-FR-A8YE-06 13 25067790 25067790 G A PARP4 Silent p.L275L 0.10 TCGA-FR-A8YE-06 13 31498588 31498588 T A MEDAG 3'UTR 0.10 TCGA-FR-A8YE-06 13 46358057 46358057 G A SIAH3 Missense_Mutation p.H91Y 0.12 tolerated(0.16) benign(0.002) TCGA-FR-A8YE-06 13 52864079 52864079 C T RP11-248G5.8 RNA 0.12 TCGA-FR-A8YE-06 13 53286977 53286977 C T LECT1 Missense_Mutation p.E166K 0.09 tolerated(0.15) probably_damaging(0.962) TCGA-FR-A8YE-06 14 106173649 106173649 C T IGHA1 Silent p.K306K 0.05 TCGA-FR-A8YE-06 14 21623963 21623963 G A OR5AU1 Silent p.L74L 0.08 TCGA-FR-A8YE-06 14 22521111 22521111 C T TRAV21 Silent p.F44F 0.19 TCGA-FR-A8YE-06 14 23635631 23635631 G A SLC7A8 Silent p.A90A 0.12 TCGA-FR-A8YE-06 14 23856783 23856783 C T MYH6 Silent p.L1535L 0.07 TCGA-FR-A8YE-06 14 23892872 23892872 C T MYH7 Missense_Mutation p.E995K 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-FR-A8YE-06 14 24785477 24785477 G C LTB4R Missense_Mutation p.R207P 0.10 deleterious(0) probably_damaging(0.996) TCGA-FR-A8YE-06 14 59113639 59113639 C T DACT1 Silent p.F766F 0.08 TCGA-FR-A8YE-06 14 59806895 59806895 C T DAAM1 Missense_Mutation p.S701L 0.12 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YE-06 14 60585352 60585352 C T PCNXL4 Silent p.Y394Y 0.08 TCGA-FR-A8YE-06 14 60585353 60585353 C T PCNXL4 Nonsense_Mutation p.Q395* 0.08 TCGA-FR-A8YE-06 14 69814652 69814652 C T GALNT16 Missense_Mutation p.S491F 0.10 tolerated(0.07) benign(0.009) TCGA-FR-A8YE-06 14 70634404 70634404 G A SLC8A3 Missense_Mutation p.L246F 0.13 tolerated(0.16) benign(0.007) TCGA-FR-A8YE-06 14 71064402 71064402 G A MED6 Missense_Mutation p.P39S 0.10 deleterious(0.03) possibly_damaging(0.893) TCGA-FR-A8YE-06 14 72925058 72925058 G A RGS6 Silent p.K105K 0.12 TCGA-FR-A8YE-06 14 92102832 92102832 G A CATSPERB Missense_Mutation p.P560L 0.10 deleterious(0) probably_damaging(0.947) TCGA-FR-A8YE-06 14 94008924 94008924 G A UNC79 Missense_Mutation p.G369E 0.08 tolerated(0.39) probably_damaging(1) TCGA-FR-A8YE-06 14 95081041 95081041 C T SERPINA3 Missense_Mutation p.S88F 0.12 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YE-06 14 96178678 96178678 C T TCL1A Missense_Mutation p.G59E 0.06 deleterious(0.04) probably_damaging(0.935) TCGA-FR-A8YE-06 15 101971624 101971624 G A PCSK6 Silent p.V185V 0.11 TCGA-FR-A8YE-06 15 24921643 24921643 G A NPAP1 Missense_Mutation p.G210E 0.10 tolerated(0.26) probably_damaging(0.991) TCGA-FR-A8YE-06 15 32972067 32972067 G A SCG5 Silent p.E109E 0.06 TCGA-FR-A8YE-06 15 43584290 43584290 C T TGM7 Missense_Mutation p.D149N 0.06 deleterious(0.04) possibly_damaging(0.802) TCGA-FR-A8YE-06 15 45051018 45051018 A T TRIM69 Missense_Mutation p.K260M 0.18 deleterious(0) benign(0.289) TCGA-FR-A8YE-06 15 45051019 45051019 G T TRIM69 Missense_Mutation p.K260N 0.18 deleterious(0) benign(0.028) TCGA-FR-A8YE-06 15 50866529 50866529 G A TRPM7 Silent p.A1750A 0.04 TCGA-FR-A8YE-06 15 58467154 58467154 C T AQP9 Silent p.I138I 0.08 TCGA-FR-A8YE-06 15 59752274 59752274 A G FAM81A Missense_Mutation p.K55E 0.13 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YE-06 15 64041734 64041734 T C HERC1 Missense_Mutation p.N684S 0.07 possibly_damaging(0.877) TCGA-FR-A8YE-06 15 69733135 69733135 C T KIF23 Missense_Mutation p.S699F 0.08 tolerated(0.3) benign(0.001) TCGA-FR-A8YE-06 15 75949719 75949719 G A SNX33 3'UTR 0.28 TCGA-FR-A8YE-06 16 14989437 14989437 T A NOMO1 Missense_Mutation p.S1202T 0.04 tolerated(0.4) benign(0.122) TCGA-FR-A8YE-06 16 1536348 1536348 C T PTX4 Silent p.G338G 0.15 TCGA-FR-A8YE-06 16 1717359 1717359 C T CRAMP1L Silent p.I1020I 0.09 TCGA-FR-A8YE-06 16 21065799 21065799 C T DNAH3 Silent p.G1327G 0.07 TCGA-FR-A8YE-06 16 24372881 24372881 C T CACNG3 Silent p.F215F 0.11 TCGA-FR-A8YE-06 16 24373177 24373177 C T CACNG3 Missense_Mutation p.P314L 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 16 26147193 26147193 G A HS3ST4 Missense_Mutation p.R332Q 0.08 tolerated(0.21) probably_damaging(0.987) TCGA-FR-A8YE-06 16 27374066 27374066 C T IL4R Missense_Mutation p.L465F 0.12 tolerated(0.59) benign(0.003) TCGA-FR-A8YE-06 16 28841982 28841982 C T ATXN2L Missense_Mutation p.R361W 0.08 tolerated(0.07) benign(0.007) TCGA-FR-A8YE-06 16 56906318 56906318 G A SLC12A3 Missense_Mutation p.G303E 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 16 61854913 61854913 C T CDH8 Missense_Mutation p.D314N 0.09 tolerated(0.32) benign(0.006) TCGA-FR-A8YE-06 16 69177145 69177145 C T CIRH1A Silent p.I197I 0.09 TCGA-FR-A8YE-06 16 75646364 75646364 G A ADAT1 Missense_Mutation p.P274S 0.09 tolerated(0.07) probably_damaging(1) TCGA-FR-A8YE-06 16 85141496 85141496 G C FAM92B Missense_Mutation p.L128V 0.10 deleterious(0.04) probably_damaging(0.954) TCGA-FR-A8YE-06 17 10204940 10204940 G A MYH13 Silent p.I1916I 0.12 TCGA-FR-A8YE-06 17 10398245 10398245 C T MYH1 Intron 0.11 TCGA-FR-A8YE-06 17 10404549 10404549 C T MYH1 Missense_Mutation p.E1206K 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-FR-A8YE-06 17 12846934 12846934 G A ARHGAP44 Silent p.R227R 0.07 TCGA-FR-A8YE-06 17 15535907 15535907 G A RP11-385D13.1 Missense_Mutation p.R311C 0.08 deleterious_low_confidence(0.02) benign(0.066) TCGA-FR-A8YE-06 17 15535908 15535908 G A RP11-385D13.1 Silent p.I310I 0.08 TCGA-FR-A8YE-06 17 30510212 30510212 A G RHOT1 Missense_Mutation p.N154S 0.06 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 17 33448690 33448690 G C FNDC8 5'UTR 0.13 TCGA-FR-A8YE-06 17 3646851 3646851 G A ITGAE Missense_Mutation p.P794S 0.10 tolerated(0.25) benign(0.038) TCGA-FR-A8YE-06 17 36993490 36993490 G A C17orf98 Missense_Mutation p.H71Y 0.07 tolerated(0.19) possibly_damaging(0.738) TCGA-FR-A8YE-06 17 37840950 37840950 G A PGAP3 Missense_Mutation p.S111L 0.12 deleterious(0) probably_damaging(0.995) TCGA-FR-A8YE-06 17 38319771 38319771 G A CASC3 Missense_Mutation p.G275S 0.08 tolerated(0.13) benign(0.008) TCGA-FR-A8YE-06 17 40030158 40030158 G A ACLY Nonsense_Mutation p.Q850* 0.10 TCGA-FR-A8YE-06 17 40070085 40070085 G A ACLY Silent p.L14L 0.08 TCGA-FR-A8YE-06 17 40261341 40261341 C A DHX58 Nonsense_Mutation p.E209* 0.13 TCGA-FR-A8YE-06 17 43317849 43317849 C T FMNL1 Missense_Mutation p.R363W 0.10 deleterious(0.02) unknown(0) TCGA-FR-A8YE-06 17 43347866 43347866 G A MAP3K14-AS1 3'Flank 0.11 TCGA-FR-A8YE-06 17 43922606 43922606 G A SPPL2C Missense_Mutation p.G112S 0.06 tolerated(0.43) benign(0.21) TCGA-FR-A8YE-06 17 44953889 44953889 C T WNT9B Silent p.P293P 0.10 TCGA-FR-A8YE-06 17 45507211 45507211 A G EFCAB13 Missense_Mutation p.Q841R 0.07 deleterious(0) possibly_damaging(0.865) TCGA-FR-A8YE-06 17 48050398 48050398 C T DLX4 Intron 0.07 TCGA-FR-A8YE-06 17 48274383 48274383 C T COL1A1 Missense_Mutation p.M264I 0.12 unknown(0) TCGA-FR-A8YE-06 17 5085569 5085569 G A ZNF594 Silent p.F661F 0.07 TCGA-FR-A8YE-06 17 56676735 56676735 C T TEX14 Silent p.L663L 0.10 TCGA-FR-A8YE-06 17 56729341 56729341 G A TEX14 Missense_Mutation p.P8S 0.08 tolerated(0.09) benign(0.196) TCGA-FR-A8YE-06 17 59560353 59560353 C T TBX4 Missense_Mutation p.P372S 0.18 tolerated(0.46) probably_damaging(0.998) TCGA-FR-A8YE-06 17 59667945 59667945 C T NACA2 Silent p.L199L 0.09 TCGA-FR-A8YE-06 17 70120252 70120252 C T SOX9 Silent p.I418I 0.09 TCGA-FR-A8YE-06 17 72537741 72537741 C T CD300C Missense_Mutation p.G221D 0.06 tolerated(0.85) benign(0.147) TCGA-FR-A8YE-06 17 7490757 7490757 C T MPDU1 Missense_Mutation p.P211L 0.08 tolerated(0.5) benign(0.005) TCGA-FR-A8YE-06 17 7660499 7660499 C G DNAH2 Silent p.A665A 0.12 TCGA-FR-A8YE-06 17 79870352 79870352 G A SIRT7 Silent p.I381I 0.05 TCGA-FR-A8YE-06 17 8215523 8215523 C T ARHGEF15 Missense_Mutation p.P56S 0.10 tolerated_low_confidence(0.44) benign(0.167) TCGA-FR-A8YE-06 18 12449863 12449863 G A SPIRE1 Missense_Mutation p.S682L 0.11 deleterious(0.01) benign(0.281) TCGA-FR-A8YE-06 18 25532112 25532112 G A CDH2 3'UTR 0.16 TCGA-FR-A8YE-06 18 28586965 28586965 G A DSC3 Missense_Mutation p.P599L 0.10 tolerated(0.21) benign(0.006) TCGA-FR-A8YE-06 18 28966653 28966653 G A DSG4 Silent p.V29V 0.10 TCGA-FR-A8YE-06 18 48190551 48190551 G A MAPK4 Missense_Mutation p.D75N 0.07 deleterious(0.03) possibly_damaging(0.458) TCGA-FR-A8YE-06 18 61304856 61304856 G A SERPINB4 3'UTR 0.10 TCGA-FR-A8YE-06 18 61305101 61305101 T A SERPINB4 Missense_Mutation p.E342V 0.10 deleterious(0.02) probably_damaging(0.909) TCGA-FR-A8YE-06 19 13386707 13386707 C T CACNA1A Missense_Mutation p.D1316N 0.08 benign(0.042) TCGA-FR-A8YE-06 19 15295180 15295180 C T NOTCH3 Missense_Mutation p.G831E 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-FR-A8YE-06 19 1818769 1818769 G A REXO1 Silent p.F946F 0.10 TCGA-FR-A8YE-06 19 19843804 19843804 G A ZNF14 5'UTR 0.12 TCGA-FR-A8YE-06 19 21239463 21239463 C T ZNF430 Missense_Mutation p.L117F 0.07 tolerated(0.27) benign(0.02) TCGA-FR-A8YE-06 19 22940021 22940021 C T ZNF99 3'Flank 0.09 TCGA-FR-A8YE-06 19 38818053 38818053 C T KCNK6 3'UTR 0.10 TCGA-FR-A8YE-06 19 38979997 38979997 G A RYR1 Missense_Mutation p.E1910K 0.11 benign(0) TCGA-FR-A8YE-06 19 41744057 41744057 G A AXL Missense_Mutation p.G331E 0.09 deleterious(0.01) benign(0.318) TCGA-FR-A8YE-06 19 42260627 42260627 C T CEA Intron 0.12 TCGA-FR-A8YE-06 19 42482342 42482342 G A ATP1A3 Silent p.V602V 0.08 TCGA-FR-A8YE-06 19 43772239 43772239 G A PSG9 Missense_Mutation p.P43S 0.11 tolerated(0.55) benign(0.314) TCGA-FR-A8YE-06 19 44980971 44980971 G A ZNF180 Missense_Mutation p.P576L 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 19 45998142 45998142 G A RTN2 Silent p.I67I 0.09 TCGA-FR-A8YE-06 19 49132464 49132464 C T SPHK2 Missense_Mutation p.P467S 0.09 tolerated(0.21) possibly_damaging(0.493) TCGA-FR-A8YE-06 19 50796875 50796875 G A MYH14 Silent p.E1800E 0.08 TCGA-FR-A8YE-06 19 50826848 50826848 G A KCNC3 Silent p.F454F 0.13 TCGA-FR-A8YE-06 19 52217207 52217207 C T HAS1 Missense_Mutation p.E404K 0.17 deleterious(0.04) possibly_damaging(0.465) TCGA-FR-A8YE-06 19 53770563 53770563 A G VN1R4 Missense_Mutation p.L119P 0.07 deleterious(0) possibly_damaging(0.831) TCGA-FR-A8YE-06 19 5616142 5616142 C G SAFB2 Splice_Site p.X181_splice 0.07 TCGA-FR-A8YE-06 19 5616143 5616143 A C SAFB2 Silent p.A181A 0.07 TCGA-FR-A8YE-06 19 56243861 56243861 G A NLRP9 Silent p.L446L 0.14 TCGA-FR-A8YE-06 19 56320316 56320316 C T NLRP11 Missense_Mutation p.E554K 0.11 deleterious(0.04) benign(0.017) TCGA-FR-A8YE-06 19 5748196 5748196 G A CATSPERD Silent p.V278V 0.06 TCGA-FR-A8YE-06 19 5923310 5923310 G A RANBP3 Silent p.S368S 0.13 TCGA-FR-A8YE-06 19 6754903 6754903 C T SH2D3A Missense_Mutation p.G307D 0.07 tolerated(0.34) benign(0.008) TCGA-FR-A8YE-06 19 757783 757783 G A MISP Silent p.L279L 0.08 TCGA-FR-A8YE-06 19 9047600 9047600 G A MUC16 Missense_Mutation p.S11344L 0.12 benign(0.003) TCGA-FR-A8YE-06 19 9062888 9062888 G A MUC16 Silent p.L8186L 0.10 TCGA-FR-A8YE-06 19 9089917 9089917 G A MUC16 Missense_Mutation p.S633L 0.08 unknown(0) TCGA-FR-A8YE-06 1 10240025 10240025 C T UBE4B 3'UTR 0.07 TCGA-FR-A8YE-06 1 110255688 110255688 G A GSTM5 Intron 0.15 TCGA-FR-A8YE-06 1 110255868 110255868 C A GSTM5 Intron 0.16 TCGA-FR-A8YE-06 1 110300649 110300649 T C EPS8L3 Missense_Mutation p.E251G 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 1 112318786 112318786 C T KCND3 Silent p.G627G 0.08 TCGA-FR-A8YE-06 1 11907313 11907313 C T NPPA Missense_Mutation p.D103N 0.11 tolerated(0.1) benign(0.276) TCGA-FR-A8YE-06 1 1191439 1191439 G A UBE2J2 Missense_Mutation p.P177S 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-FR-A8YE-06 1 120336796 120336796 G A REG4 3'UTR 0.08 TCGA-FR-A8YE-06 1 120930062 120930062 C T FCGR1B Missense_Mutation p.G180E 0.08 tolerated(0.92) probably_damaging(0.998) TCGA-FR-A8YE-06 1 12955580 12955580 C T PRAMEF10 Silent p.R33R 0.10 TCGA-FR-A8YE-06 1 142713770 142713770 C T RP11-417J8.6 RNA 0.04 TCGA-FR-A8YE-06 1 142713869 142713869 G A RP11-417J8.6 RNA 0.06 TCGA-FR-A8YE-06 1 152286131 152286131 C T FLG Missense_Mutation p.D411N 0.13 benign(0.36) TCGA-FR-A8YE-06 1 152759848 152759848 C T LCE1E Missense_Mutation p.P25S 0.07 deleterious_low_confidence(0) unknown(0) TCGA-FR-A8YE-06 1 152759849 152759849 C T LCE1E Missense_Mutation p.P25L 0.07 deleterious_low_confidence(0) unknown(0) TCGA-FR-A8YE-06 1 156883660 156883660 G A PEAR1 Silent p.E910E 0.11 TCGA-FR-A8YE-06 1 157805775 157805775 C T CD5L Missense_Mutation p.G76S 0.07 tolerated(0.14) possibly_damaging(0.888) TCGA-FR-A8YE-06 1 158390293 158390293 G A OR10K2 Missense_Mutation p.R122C 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-FR-A8YE-06 1 15905504 15905504 C T AGMAT Silent p.T190T 0.11 TCGA-FR-A8YE-06 1 160095000 160095000 G A ATP1A2 Silent p.L235L 0.11 TCGA-FR-A8YE-06 1 160129271 160129271 C T ATP1A4 Silent p.L245L 0.13 TCGA-FR-A8YE-06 1 160321591 160321591 C T NCSTN Missense_Mutation p.T280I 0.08 deleterious(0.01) possibly_damaging(0.632) TCGA-FR-A8YE-06 1 160321592 160321592 C T NCSTN Silent p.T280T 0.08 TCGA-FR-A8YE-06 1 167097075 167097075 A C DUSP27 Missense_Mutation p.N903H 0.13 tolerated(0.15) benign(0.01) TCGA-FR-A8YE-06 1 167794007 167794007 C T ADCY10 Missense_Mutation p.M1279I 0.11 tolerated(1) benign(0.002) TCGA-FR-A8YE-06 1 16946432 16946432 T C RP5-1182A14.5 3'Flank 0.14 TCGA-FR-A8YE-06 1 169489811 169489811 C T F5 Missense_Mutation p.R2047Q 0.09 tolerated(0.34) benign(0.04) TCGA-FR-A8YE-06 1 169572414 169572414 C T SELP Missense_Mutation p.G519R 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 1 178490231 178490231 C T TEX35 Intron 0.15 TCGA-FR-A8YE-06 1 183617410 183617410 C T APOBEC4 Nonsense_Mutation p.W169* 0.07 TCGA-FR-A8YE-06 1 197024943 197024943 G A F13B Missense_Mutation p.S419F 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-FR-A8YE-06 1 197411503 197411503 G A CRB1 Intron 0.06 TCGA-FR-A8YE-06 1 198668815 198668815 G A PTPRC Missense_Mutation p.G141S 0.09 tolerated(0.61) benign(0.026) TCGA-FR-A8YE-06 1 202097039 202097039 C T GPR37L1 Silent p.L267L 0.15 TCGA-FR-A8YE-06 1 21551882 21551882 G A ECE1 Missense_Mutation p.S634F 0.08 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 1 216498670 216498670 C T USH2A Missense_Mutation p.D374N 0.08 probably_damaging(0.951) TCGA-FR-A8YE-06 1 220346020 220346020 C A RAB3GAP2 Missense_Mutation p.C792F 0.09 tolerated(0.71) benign(0.319) TCGA-FR-A8YE-06 1 226923783 226923783 T G ITPKB Silent p.A459A 0.09 TCGA-FR-A8YE-06 1 228210581 228210581 G A WNT3A Silent p.L95L 0.15 TCGA-FR-A8YE-06 1 228210582 228210582 G A WNT3A Missense_Mutation p.A96T 0.15 tolerated(0.14) possibly_damaging(0.792) TCGA-FR-A8YE-06 1 22923821 22923821 C T EPHA8 Silent p.F594F 0.13 TCGA-FR-A8YE-06 1 23234584 23234584 G A EPHB2 Missense_Mutation p.V760I 0.10 deleterious(0.02) possibly_damaging(0.618) TCGA-FR-A8YE-06 1 233160917 233160917 C T PCNXL2 Missense_Mutation p.R1527K 0.06 tolerated(1) benign(0.034) TCGA-FR-A8YE-06 1 236749603 236749603 G A HEATR1 Missense_Mutation p.A622V 0.07 deleterious(0.03) benign(0.383) TCGA-FR-A8YE-06 1 242052875 242052875 C T EXO1 Silent p.G838G 0.05 TCGA-FR-A8YE-06 1 248224764 248224764 C T OR2L3 Missense_Mutation p.P261S 0.08 deleterious(0.03) possibly_damaging(0.841) TCGA-FR-A8YE-06 1 248636873 248636873 G A OR2T3 Missense_Mutation p.M74I 0.13 tolerated(0.16) benign(0.004) TCGA-FR-A8YE-06 1 26514788 26514788 C T CNKSR1 Silent p.P506P 0.11 TCGA-FR-A8YE-06 1 35226858 35226858 G A GJB4 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 1 40424464 40424464 C T MFSD2A Missense_Mutation p.S120F 0.08 deleterious(0) probably_damaging(0.982) TCGA-FR-A8YE-06 1 43675689 43675689 C T WDR65 Silent p.L677L 0.06 TCGA-FR-A8YE-06 1 44064369 44064369 C T PTPRF Intron 0.08 TCGA-FR-A8YE-06 1 46654582 46654582 G A POMGNT1 Silent p.L686L 0.11 TCGA-FR-A8YE-06 1 46654583 46654583 G A POMGNT1 Silent p.G685G 0.11 TCGA-FR-A8YE-06 1 51913770 51913770 G A EPS15 Missense_Mutation p.P200L 0.14 deleterious(0) probably_damaging(0.913) TCGA-FR-A8YE-06 1 57411650 57411650 A T C8B Missense_Mutation p.F317I 0.11 deleterious(0) possibly_damaging(0.744) TCGA-FR-A8YE-06 1 67155935 67155935 G A SGIP1 Silent p.R502R 0.11 TCGA-FR-A8YE-06 1 75102094 75102094 C T C1orf173 Missense_Mutation p.G158E 0.09 deleterious(0.04) probably_damaging(0.969) TCGA-FR-A8YE-06 1 89294247 89294247 A T PKN2 Missense_Mutation p.T835S 0.05 deleterious(0.01) possibly_damaging(0.86) TCGA-FR-A8YE-06 1 94998690 94998690 A G F3 Silent p.L183L 0.11 TCGA-FR-A8YE-06 1 95001547 95001547 G A F3 Missense_Mutation p.S129F 0.09 deleterious(0) probably_damaging(0.98) TCGA-FR-A8YE-06 20 20475893 20475893 G A RALGAPA2 Silent p.V1745V 0.08 TCGA-FR-A8YE-06 20 31967359 31967359 G A CDK5RAP1 Missense_Mutation p.R339C 0.09 deleterious(0) probably_damaging(0.999) TCGA-FR-A8YE-06 20 33623023 33623023 G A TRPC4AP Silent p.F318F 0.09 TCGA-FR-A8YE-06 20 42162713 42162713 C T L3MBTL1 Missense_Mutation p.P505S 0.12 deleterious(0.02) probably_damaging(0.957) TCGA-FR-A8YE-06 20 53205042 53205042 G A DOK5 Silent p.V65V 0.09 TCGA-FR-A8YE-06 20 76827 76827 G A DEFB125 Silent p.L80L 0.11 TCGA-FR-A8YE-06 21 15561564 15561564 T C LIPI Missense_Mutation p.K96E 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-FR-A8YE-06 21 15745944 15745944 G A HSPA13 Silent p.F470F 0.09 TCGA-FR-A8YE-06 21 31692282 31692282 G A KRTAP26-1 Silent p.L24L 0.17 TCGA-FR-A8YE-06 21 34648936 34648936 C T IL10RB Missense_Mutation p.T70I 0.06 tolerated(0.23) benign(0.011) TCGA-FR-A8YE-06 21 34648937 34648937 C T IL10RB Silent p.T70T 0.06 TCGA-FR-A8YE-06 21 34894531 34894531 T C GART Missense_Mutation p.K453E 0.14 tolerated(0.85) benign(0.004) TCGA-FR-A8YE-06 21 41496127 41496127 G A DSCAM Missense_Mutation p.P1231S 0.07 tolerated(0.48) benign(0.439) TCGA-FR-A8YE-06 21 43412519 43412519 G A ZBTB21 Silent p.H562H 0.08 TCGA-FR-A8YE-06 21 43711204 43711204 C T ABCG1 Missense_Mutation p.P478S 0.06 deleterious(0) possibly_damaging(0.718) TCGA-FR-A8YE-06 22 18016889 18016889 C T CECR2 Silent p.S381S 0.09 TCGA-FR-A8YE-06 22 19969167 19969167 G A ARVCF Silent p.L155L 0.15 TCGA-FR-A8YE-06 22 26222404 26222404 G A MYO18B Silent p.V908V 0.05 TCGA-FR-A8YE-06 22 32480561 32480561 G A SLC5A1 Missense_Mutation p.R267Q 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-FR-A8YE-06 22 39483447 39483447 A T APOBEC3G 3'UTR 0.12 TCGA-FR-A8YE-06 22 42608839 42608839 T C TCF20 Missense_Mutation p.S825G 0.17 benign(0.001) TCGA-FR-A8YE-06 22 45309797 45309797 C T PHF21B Missense_Mutation p.A246T 0.07 tolerated(0.2) benign(0.018) TCGA-FR-A8YE-06 22 50616198 50616198 G A PANX2 Missense_Mutation p.E353K 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-FR-A8YE-06 2 103148910 103148910 G A SLC9A4 Silent p.R720R 0.10 TCGA-FR-A8YE-06 2 10584698 10584698 G A ODC1 Missense_Mutation p.P60S 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-FR-A8YE-06 2 110917814 110917814 G A NPHP1 Missense_Mutation p.R381C 0.12 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YE-06 2 113832950 113832950 G A IL1F10 3'UTR 0.10 TCGA-FR-A8YE-06 2 122363382 122363382 A T CLASP1 Nonsense_Mutation p.Y30* 0.10 TCGA-FR-A8YE-06 2 131904300 131904300 G T PLEKHB2 Missense_Mutation p.G216V 0.09 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 2 141272267 141272267 C T LRP1B Missense_Mutation p.E2742K 0.04 possibly_damaging(0.621) TCGA-FR-A8YE-06 2 166179821 166179821 C T SCN2A Silent p.D609D 0.11 TCGA-FR-A8YE-06 2 166904271 166904271 G A SCN1A Missense_Mutation p.P346S 0.14 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 2 174231903 174231903 G A CDCA7 Missense_Mutation p.G404E 0.10 deleterious(0) benign(0.273) TCGA-FR-A8YE-06 2 179466629 179466629 C T TTN Missense_Mutation p.D18428N 0.09 TCGA-FR-A8YE-06 2 192011339 192011339 C T STAT4 Silent p.Q91Q 0.14 TCGA-FR-A8YE-06 2 196659262 196659262 C T DNAH7 Missense_Mutation p.E3506K 0.06 deleterious(0.02) benign(0.201) TCGA-FR-A8YE-06 2 200789906 200789906 G A C2orf69 Missense_Mutation p.C152Y 0.11 deleterious(0.01) possibly_damaging(0.903) TCGA-FR-A8YE-06 2 200789907 200789907 T A C2orf69 Nonsense_Mutation p.C152* 0.11 TCGA-FR-A8YE-06 2 207174998 207174998 C T ZDBF2 Missense_Mutation p.P1916S 0.09 tolerated(0.39) possibly_damaging(0.641) TCGA-FR-A8YE-06 2 21225858 21225858 C T APOB Missense_Mutation p.D4146N 0.09 benign(0.002) TCGA-FR-A8YE-06 2 227924851 227924851 C T COL4A4 Splice_Site p.X722_splice 0.11 TCGA-FR-A8YE-06 2 234601577 234601577 G A UGT1A6 5'UTR 0.10 TCGA-FR-A8YE-06 2 241631377 241631377 C T AQP12A Missense_Mutation p.A16V 0.08 tolerated(0.28) benign(0.026) TCGA-FR-A8YE-06 2 242814456 242814456 G A CXXC11 Missense_Mutation p.G250E 0.10 tolerated(0.14) probably_damaging(0.965) TCGA-FR-A8YE-06 2 24524898 24524898 T A ITSN2 Missense_Mutation p.M311L 0.07 tolerated(0.16) possibly_damaging(0.75) TCGA-FR-A8YE-06 2 27800525 27800525 G A C2orf16 Silent p.V362V 0.07 TCGA-FR-A8YE-06 2 32832541 32832541 C T BIRC6 Missense_Mutation p.S4697F 0.09 probably_damaging(0.998) TCGA-FR-A8YE-06 2 88422580 88422580 C T FABP1 Missense_Mutation p.R126K 0.13 tolerated(0.33) benign(0.095) TCGA-FR-A8YE-06 2 90121971 90121971 G A IGKV1D-17 Silent p.G63G 0.10 TCGA-FR-A8YE-06 2 95497781 95497781 C T ANKRD20A8P RNA 0.11 TCGA-FR-A8YE-06 3 102183056 102183056 G A ZPLD1 Missense_Mutation p.G257E 0.09 tolerated(0.24) probably_damaging(0.963) TCGA-FR-A8YE-06 3 108335421 108335421 G A DZIP3 Missense_Mutation p.E98K 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.505) TCGA-FR-A8YE-06 3 108773654 108773654 A G MORC1 Silent p.F417F 0.12 TCGA-FR-A8YE-06 3 121208731 121208731 A G POLQ Missense_Mutation p.V1016A 0.05 tolerated_low_confidence(0.17) benign(0.006) TCGA-FR-A8YE-06 3 123420297 123420297 C T MYLK Missense_Mutation p.R817K 0.13 tolerated(0.29) benign(0.014) TCGA-FR-A8YE-06 3 138739176 138739176 C T PRR23B Missense_Mutation p.E110K 0.12 deleterious(0.02) possibly_damaging(0.863) TCGA-FR-A8YE-06 3 150931721 150931721 C T P2RY14 Nonsense_Mutation p.W128* 0.16 TCGA-FR-A8YE-06 3 164786597 164786597 C T SI Silent p.R132R 0.08 TCGA-FR-A8YE-06 3 179046123 179046123 C T ZNF639 Silent p.H14H 0.05 TCGA-FR-A8YE-06 3 183707137 183707137 C T ABCC5 Missense_Mutation p.R55Q 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.67) TCGA-FR-A8YE-06 3 185167829 185167829 C T MAP3K13 Silent p.I384I 0.07 TCGA-FR-A8YE-06 3 188933117 188933117 G A TPRG1 Missense_Mutation p.G83S 0.18 tolerated(0.87) benign(0.011) TCGA-FR-A8YE-06 3 195298153 195298153 G A APOD Missense_Mutation p.S110F 0.07 tolerated(0.73) benign(0.002) TCGA-FR-A8YE-06 3 26751350 26751350 C T LRRC3B Missense_Mutation p.P63S 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 3 38793711 38793711 G A SCN10A Missense_Mutation p.S585L 0.10 tolerated(0.12) benign(0.002) TCGA-FR-A8YE-06 3 47882433 47882433 C T DHX30 Missense_Mutation p.R145C 0.14 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-FR-A8YE-06 3 53857361 53857361 G A CHDH Silent p.F225F 0.12 TCGA-FR-A8YE-06 3 69915441 69915441 G A MITF Intron 0.10 TCGA-FR-A8YE-06 3 89498490 89498490 G A EPHA3 Missense_Mutation p.G821E 0.08 deleterious(0) probably_damaging(0.998) TCGA-FR-A8YE-06 3 9057398 9057398 C T SRGAP3 Missense_Mutation p.D566N 0.07 deleterious(0.01) possibly_damaging(0.723) TCGA-FR-A8YE-06 4 119216956 119216956 G A PRSS12 Silent p.I631I 0.06 TCGA-FR-A8YE-06 4 129782885 129782885 C T JADE1 Silent p.A336A 0.11 TCGA-FR-A8YE-06 4 141315147 141315147 C T CLGN Missense_Mutation p.D400N 0.10 tolerated(0.49) benign(0.005) TCGA-FR-A8YE-06 4 155555 155555 C T ZNF718 RNA 0.09 TCGA-FR-A8YE-06 4 169190038 169190038 G A DDX60 Missense_Mutation p.S918L 0.06 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 4 175897924 175897924 A G ADAM29 Silent p.L416L 0.10 TCGA-FR-A8YE-06 4 26422307 26422307 C T RBPJ Silent p.S165S 0.11 TCGA-FR-A8YE-06 4 46307678 46307678 C T GABRA2 Missense_Mutation p.D204N 0.12 tolerated(0.24) benign(0.003) TCGA-FR-A8YE-06 4 47938722 47938722 C T CNGA1 Missense_Mutation p.E666K 0.11 deleterious(0.03) probably_damaging(0.967) TCGA-FR-A8YE-06 4 48114430 48114430 C T TXK Missense_Mutation p.D92N 0.06 tolerated(0.21) probably_damaging(1) TCGA-FR-A8YE-06 4 49005836 49005836 C T CWH43 Missense_Mutation p.S296F 0.10 deleterious(0) probably_damaging(0.986) TCGA-FR-A8YE-06 4 5977626 5977626 C T C4orf50 Silent p.K549K 0.08 TCGA-FR-A8YE-06 4 70361418 70361418 A C UGT2B4 Silent p.T54T 0.11 TCGA-FR-A8YE-06 4 71201672 71201672 G A CABS1 Missense_Mutation p.E306K 0.10 tolerated(0.06) benign(0.002) TCGA-FR-A8YE-06 4 71509016 71509016 G A ENAM Missense_Mutation p.D625N 0.10 tolerated(0.15) benign(0.139) TCGA-FR-A8YE-06 4 7774519 7774519 C T AFAP1 Intron 0.23 TCGA-FR-A8YE-06 4 85672654 85672654 T C WDFY3 Silent p.L1985L 0.12 TCGA-FR-A8YE-06 4 85738605 85738605 G A WDFY3 Silent p.L609L 0.11 TCGA-FR-A8YE-06 5 112770224 112770224 G A TSSK1B Missense_Mutation p.R105W 0.11 deleterious(0) probably_damaging(0.93) TCGA-FR-A8YE-06 5 112770225 112770225 G A TSSK1B Silent p.T104T 0.11 TCGA-FR-A8YE-06 5 121780257 121780257 G A SNCAIP Splice_Site p.X475_splice 0.05 TCGA-FR-A8YE-06 5 13830158 13830158 C T DNAH5 Missense_Mutation p.E2076K 0.05 possibly_damaging(0.621) TCGA-FR-A8YE-06 5 13871682 13871682 G A DNAH5 Silent p.L1197L 0.08 TCGA-FR-A8YE-06 5 13871800 13871800 C T DNAH5 Silent p.K1157K 0.05 TCGA-FR-A8YE-06 5 140166226 140166226 C T PCDHA1 Silent p.F117F 0.09 TCGA-FR-A8YE-06 5 140502314 140502314 C T PCDHB4 Missense_Mutation p.P245L 0.08 tolerated(1) benign(0) TCGA-FR-A8YE-06 5 140554506 140554506 C T PCDHB7 Missense_Mutation p.S697L 0.07 deleterious_low_confidence(0) benign(0.055) TCGA-FR-A8YE-06 5 140724052 140724052 G A PCDHGA3 Missense_Mutation p.R151Q 0.11 deleterious_low_confidence(0.03) benign(0.314) TCGA-FR-A8YE-06 5 141309599 141309599 C T KIAA0141 Missense_Mutation p.S206F 0.12 tolerated(0.21) benign(0.01) TCGA-FR-A8YE-06 5 146070703 146070703 G A PPP2R2B Silent p.I148I 0.07 TCGA-FR-A8YE-06 5 160721141 160721141 G T GABRB2 Missense_Mutation p.P496T 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 5 161569227 161569227 C T GABRG2 Missense_Mutation p.T316I 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-FR-A8YE-06 5 161576172 161576172 C A GABRG2 Silent p.P367P 0.04 TCGA-FR-A8YE-06 5 16794894 16794894 C A MYO10 Missense_Mutation p.A110S 0.10 tolerated(0.82) benign(0.005) TCGA-FR-A8YE-06 5 168199802 168199802 C T SLIT3 Silent p.K481K 0.18 TCGA-FR-A8YE-06 5 176524637 176524637 G A FGFR4 Missense_Mutation p.G790E 0.06 tolerated_low_confidence(0.45) unknown(0) TCGA-FR-A8YE-06 5 176636707 176636707 G A NSD1 Missense_Mutation p.G436E 0.18 deleterious_low_confidence(0.03) benign(0.059) TCGA-FR-A8YE-06 5 26902599 26902599 C T CDH9 Silent p.R413R 0.06 TCGA-FR-A8YE-06 5 31302339 31302339 G A CDH6 Silent p.E311E 0.06 TCGA-FR-A8YE-06 5 33998754 33998754 A G AMACR Missense_Mutation p.L244P 0.05 deleterious(0) probably_damaging(0.985) TCGA-FR-A8YE-06 5 35048026 35048026 G A AGXT2 5'UTR 0.11 TCGA-FR-A8YE-06 5 35700754 35700754 G A SPEF2 Silent p.A766A 0.09 TCGA-FR-A8YE-06 5 35876193 35876193 C T IL7R Missense_Mutation p.P329S 0.07 tolerated(0.35) benign(0.032) TCGA-FR-A8YE-06 5 35909973 35909973 C T CAPSL Missense_Mutation p.G174R 0.07 deleterious(0) probably_damaging(0.997) TCGA-FR-A8YE-06 5 36608541 36608541 G A SLC1A3 Missense_Mutation p.G6R 0.08 deleterious_low_confidence(0) benign(0.009) TCGA-FR-A8YE-06 5 36953747 36953747 C T NIPBL 5'UTR 0.05 TCGA-FR-A8YE-06 5 36975985 36975985 C G NIPBL Missense_Mutation p.Q326E 0.08 deleterious_low_confidence(0.03) benign(0.001) TCGA-FR-A8YE-06 5 36976343 36976343 C T NIPBL Missense_Mutation p.A445V 0.10 deleterious_low_confidence(0.01) benign(0.007) TCGA-FR-A8YE-06 5 38407005 38407005 C T EGFLAM Missense_Mutation p.P302S 0.08 tolerated_low_confidence(0.36) benign(0.004) TCGA-FR-A8YE-06 5 38425162 38425162 C T EGFLAM Missense_Mutation p.P593L 0.05 tolerated(0.07) probably_damaging(0.981) TCGA-FR-A8YE-06 5 38903999 38903999 C T OSMR Missense_Mutation p.P336L 0.05 deleterious(0) probably_damaging(0.928) TCGA-FR-A8YE-06 5 38945127 38945127 G A RICTOR Silent p.I1559I 0.10 TCGA-FR-A8YE-06 5 41055882 41055882 C T MROH2B Missense_Mutation p.G332E 0.08 tolerated(0.1) possibly_damaging(0.894) TCGA-FR-A8YE-06 5 41160458 41160458 G A C6 Silent p.I490I 0.10 TCGA-FR-A8YE-06 5 52781579 52781579 A G FST Intron 0.15 TCGA-FR-A8YE-06 5 52781580 52781580 G A FST Intron 0.13 TCGA-FR-A8YE-06 5 66460557 66460557 G A MAST4 Silent p.K1850K 0.11 TCGA-FR-A8YE-06 5 76717681 76717681 G A PDE8B Silent p.G762G 0.12 TCGA-FR-A8YE-06 5 79030262 79030262 G A CMYA5 Missense_Mutation p.E1892K 0.08 benign(0.004) TCGA-FR-A8YE-06 5 90136588 90136588 C T GPR98 Missense_Mutation p.P5602L 0.08 possibly_damaging(0.908) TCGA-FR-A8YE-06 6 105219823 105219823 C T HACE1 Missense_Mutation p.R664Q 0.09 deleterious(0) probably_damaging(0.958) TCGA-FR-A8YE-06 6 136597494 136597494 C T BCLAF1 Missense_Mutation p.G390E 0.04 tolerated(0.92) benign(0.165) TCGA-FR-A8YE-06 6 152674554 152674554 G A SYNE1 Silent p.F3699F 0.09 TCGA-FR-A8YE-06 6 160828169 160828169 C T SLC22A3 Silent p.I210I 0.06 TCGA-FR-A8YE-06 6 167754861 167754861 G A TTLL2 Silent p.E491E 0.13 TCGA-FR-A8YE-06 6 170105186 170105186 C T C6orf120 3'UTR 0.12 TCGA-FR-A8YE-06 6 17772190 17772190 C T KIF13A Silent p.E1475E 0.11 TCGA-FR-A8YE-06 6 26033684 26033684 C T HIST1H2AB Missense_Mutation p.G38D 0.16 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-FR-A8YE-06 6 26033685 26033685 C T HIST1H2AB Missense_Mutation p.G38S 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-FR-A8YE-06 6 29364992 29364992 C T OR12D2 Silent p.I172I 0.08 TCGA-FR-A8YE-06 6 31599292 31599292 C T PRRC2A Missense_Mutation p.R948W 0.10 unknown(0) TCGA-FR-A8YE-06 6 32609906 32609906 C T HLA-DQA1 Silent p.F163F 0.10 TCGA-FR-A8YE-06 6 32944159 32944159 C T BRD2 Missense_Mutation p.S248F 0.06 deleterious(0.01) possibly_damaging(0.527) TCGA-FR-A8YE-06 6 32944161 32944161 C A BRD2 Missense_Mutation p.P249T 0.06 tolerated(0.13) benign(0.366) TCGA-FR-A8YE-06 6 36181818 36181818 C T BRPF3 Missense_Mutation p.L882F 0.10 tolerated(0.37) benign(0.006) TCGA-FR-A8YE-06 6 36198365 36198365 C T BRPF3 Silent p.F1199F 0.15 TCGA-FR-A8YE-06 6 39286860 39286860 G A KCNK16 Missense_Mutation p.T88I 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-FR-A8YE-06 6 46107875 46107875 G A ENPP4 Nonsense_Mutation p.W185* 0.15 TCGA-FR-A8YE-06 6 51524329 51524329 C T PKHD1 Missense_Mutation p.G3532D 0.10 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 6 54806557 54806557 G A FAM83B Missense_Mutation p.D930N 0.11 tolerated(0.32) benign(0.004) TCGA-FR-A8YE-06 6 55739320 55739320 C T BMP5 Missense_Mutation p.G115E 0.08 tolerated(0.12) benign(0.016) TCGA-FR-A8YE-06 6 71009806 71009806 G A COL9A1 Missense_Mutation p.S80L 0.09 unknown(0) TCGA-FR-A8YE-06 6 74072837 74072837 C T KHDC3L Silent p.I63I 0.11 TCGA-FR-A8YE-06 7 100417229 100417229 G A EPHB4 Missense_Mutation p.A416V 0.07 tolerated(0.05) possibly_damaging(0.848) TCGA-FR-A8YE-06 7 100677977 100677977 T C MUC17 Missense_Mutation p.S1094P 0.03 probably_damaging(0.98) TCGA-FR-A8YE-06 7 100678874 100678874 G A MUC17 Missense_Mutation p.E1393K 0.07 unknown(0) TCGA-FR-A8YE-06 7 101845090 101845090 C T CUX1 Missense_Mutation p.S849F 0.27 deleterious(0.03) unknown(0) TCGA-FR-A8YE-06 7 111368411 111368411 G A DOCK4 Silent p.S1940S 0.29 TCGA-FR-A8YE-06 7 116869876 116869876 C T ST7 Missense_Mutation p.P489S 0.07 deleterious_low_confidence(0.03) probably_damaging(0.932) TCGA-FR-A8YE-06 7 120965493 120965493 G A WNT16 5'Flank 0.09 TCGA-FR-A8YE-06 7 133689828 133689828 C T EXOC4 Nonsense_Mutation p.Q838* 0.05 TCGA-FR-A8YE-06 7 137363399 137363399 C T DGKI Splice_Site p.X171_splice 0.23 TCGA-FR-A8YE-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-FR-A8YE-06 7 146829596 146829596 C T CNTNAP2 Missense_Mutation p.S448F 0.09 tolerated(0.09) possibly_damaging(0.793) TCGA-FR-A8YE-06 7 2581027 2581027 G A BRAT1 Missense_Mutation p.S409F 0.28 deleterious(0) probably_damaging(0.987) TCGA-FR-A8YE-06 7 2583315 2583315 C T BRAT1 Missense_Mutation p.V238M 0.19 tolerated(0.13) benign(0.008) TCGA-FR-A8YE-06 7 2946228 2946228 A G CARD11 3'UTR 0.13 TCGA-FR-A8YE-06 7 43351468 43351468 C T HECW1 Missense_Mutation p.P45L 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-FR-A8YE-06 7 43351469 43351469 C T HECW1 Silent p.P45P 0.21 TCGA-FR-A8YE-06 7 44578567 44578567 G A NPC1L1 Missense_Mutation p.P477S 0.16 deleterious(0) probably_damaging(0.992) TCGA-FR-A8YE-06 7 47921512 47921512 G A PKD1L1 Missense_Mutation p.S1146F 0.13 deleterious(0) possibly_damaging(0.588) TCGA-FR-A8YE-06 7 5339053 5339053 G A SLC29A4 Missense_Mutation p.G402S 0.13 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 7 70885994 70885994 G A WBSCR17 Missense_Mutation p.E289K 0.06 tolerated(0.4) probably_damaging(0.993) TCGA-FR-A8YE-06 7 73275514 73275514 G A WBSCR28 5'UTR 0.24 TCGA-FR-A8YE-06 7 82784774 82784774 G A PCLO Missense_Mutation p.P395S 0.18 possibly_damaging(0.803) TCGA-FR-A8YE-06 7 87214889 87214889 C T ABCB1 Missense_Mutation p.M75I 0.25 tolerated(0.05) benign(0.412) TCGA-FR-A8YE-06 7 99996914 99996914 G A PILRA Silent p.R236R 0.22 TCGA-FR-A8YE-06 8 116426732 116426732 G A TRPS1 Missense_Mutation p.P1135L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FR-A8YE-06 8 121344407 121344407 G A COL14A1 Missense_Mutation p.G1563R 0.11 deleterious(0) possibly_damaging(0.851) TCGA-FR-A8YE-06 8 121644723 121644723 C T SNTB1 Silent p.G319G 0.10 TCGA-FR-A8YE-06 8 135614089 135614089 G A ZFAT Nonsense_Mutation p.Q625* 0.12 TCGA-FR-A8YE-06 8 143694556 143694556 C T ARC Silent p.L359L 0.13 TCGA-FR-A8YE-06 8 15978113 15978113 G A MSR1 Missense_Mutation p.P346S 0.19 tolerated(0.37) benign(0.005) TCGA-FR-A8YE-06 8 42033436 42033436 A G PLAT 3'UTR 0.26 TCGA-FR-A8YE-06 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.17 TCGA-FR-A8YE-06 8 57354160 57354160 C T PENK Missense_Mutation p.E159K 0.11 deleterious(0) possibly_damaging(0.735) TCGA-FR-A8YE-06 8 63659537 63659537 G A NKAIN3 Nonsense_Mutation p.W107* 0.12 TCGA-FR-A8YE-06 8 94770772 94770772 G A TMEM67 Missense_Mutation p.G125E 0.08 tolerated(0.06) probably_damaging(0.989) TCGA-FR-A8YE-06 8 95676977 95676977 C T ESRP1 Missense_Mutation p.P233S 0.15 deleterious(0) probably_damaging(1) TCGA-FR-A8YE-06 9 100862310 100862310 T C TRIM14 Missense_Mutation p.Q147R 0.11 deleterious(0.03) benign(0.093) TCGA-FR-A8YE-06 9 100919755 100919755 A G CORO2A Missense_Mutation p.I63T 0.07 deleterious(0) probably_damaging(0.967) TCGA-FR-A8YE-06 9 113065886 113065886 G A TXNDC8 3'UTR 0.12 TCGA-FR-A8YE-06 9 119033640 119033640 C T PAPPA Silent p.I966I 0.06 TCGA-FR-A8YE-06 9 123586878 123586878 G T PSMD5 Silent p.V300V 0.09 TCGA-FR-A8YE-06 9 37486585 37486585 C G POLR1E Intron 0.17 TCGA-FR-A8YE-06 9 37486709 37486709 C A POLR1E Missense_Mutation p.S29Y 0.07 deleterious(0) probably_damaging(0.951) TCGA-FR-A8YE-06 9 5335471 5335471 T C RLN1 Missense_Mutation p.Q113R 0.11 tolerated(0.16) probably_damaging(0.973) TCGA-FR-A8YE-06 9 5335472 5335472 G A RLN1 Nonsense_Mutation p.Q113* 0.11 TCGA-FR-A8YE-06 9 72131723 72131723 G A APBA1 Missense_Mutation p.A135V 0.25 deleterious_low_confidence(0) possibly_damaging(0.686) TCGA-FR-A8YE-06 9 72758683 72758683 G A MAMDC2 Missense_Mutation p.R451K 0.10 tolerated(0.35) benign(0.129) TCGA-FR-A8YE-06 9 8484163 8484163 C T PTPRD Missense_Mutation p.M1123I 0.10 tolerated(0.42) possibly_damaging(0.795) TCGA-FR-A8YE-06 X 115303593 115303593 C T AGTR2 Silent p.F20F 0.15 TCGA-FR-A8YE-06 X 135441466 135441466 C T GPR112 Silent p.V2332V 0.16 TCGA-FR-A8YE-06 X 140994506 140994506 C T MAGEC1 Missense_Mutation p.P439L 0.16 deleterious_low_confidence(0) benign(0) TCGA-FR-A8YE-06 X 150885858 150885858 G A FATE1 Missense_Mutation p.R74Q 0.28 tolerated(0.33) benign(0.035) TCGA-FR-A8YE-06 X 153944425 153944425 G A GAB3 Silent p.F84F 0.16 TCGA-FR-A8YE-06 X 37026918 37026918 C T FAM47C Silent p.L145L 0.09 TCGA-FR-A8YE-06 X 37027726 37027726 C T FAM47C Missense_Mutation p.R415C 0.21 tolerated(0.26) probably_damaging(0.962) TCGA-FR-A8YE-06 X 41057822 41057822 C T USP9X Silent p.Y1474Y 0.18 TCGA-FR-A8YE-06 X 54106705 54106705 G A FAM120C Missense_Mutation p.T999I 0.11 tolerated(0.4) benign(0.005) TCGA-FR-A8YE-06 X 63548716 63548716 G A MTMR8 Missense_Mutation p.P473S 0.32 deleterious(0.03) benign(0.224) TCGA-FR-A8YE-06 X 70823844 70823844 T G ACRC Missense_Mutation p.S239R 0.21 unknown(0) TCGA-FR-A8YE-06 X 73043687 73043687 C T XIST RNA 0.23 TCGA-FR-A8YE-06 X 9679782 9679782 C T TBL1X Missense_Mutation p.S524F 0.23 deleterious(0) probably_damaging(0.991) TCGA-FS-A1YW-06 10 21074667 21074667 G A NEBL 3'UTR 0.55 TCGA-FS-A1YW-06 10 44052772 44052772 G A ZNF239 Silent p.I252I 0.35 TCGA-FS-A1YW-06 10 50532573 50532573 G A C10orf71 Silent p.E661E 0.30 TCGA-FS-A1YW-06 10 75936613 75936613 G A ADK Intron 0.31 TCGA-FS-A1YW-06 10 93359 93359 C T TUBB8 Missense_Mutation p.E325K 0.35 deleterious_low_confidence(0.02) benign(0.206) TCGA-FS-A1YW-06 10 96707648 96707648 G A CYP2C9 Missense_Mutation p.M198I 0.48 tolerated(0.35) benign(0.018) TCGA-FS-A1YW-06 11 10794192 10794192 T C CTR9 Missense_Mutation p.L857P 0.43 tolerated(0.25) possibly_damaging(0.601) TCGA-FS-A1YW-06 11 108361940 108361940 G A KDELC2 Intron 0.88 TCGA-FS-A1YW-06 11 111426015 111426015 G A LAYN Missense_Mutation p.E228K 0.28 tolerated(0.07) benign(0.275) TCGA-FS-A1YW-06 11 118376065 118376065 G A KMT2A Missense_Mutation p.S3153N 0.91 benign(0.233) TCGA-FS-A1YW-06 11 1267510 1267510 A T MUC5B Missense_Mutation p.I3134F 0.28 unknown(0) TCGA-FS-A1YW-06 11 40137497 40137497 C T LRRC4C Missense_Mutation p.E116K 0.41 deleterious(0) probably_damaging(0.964) TCGA-FS-A1YW-06 11 45265575 45265575 C T SYT13 3'UTR 0.39 TCGA-FS-A1YW-06 11 4703075 4703075 G A OR51E2 Silent p.I289I 0.44 TCGA-FS-A1YW-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.50 tolerated(0.65) benign(0.008) TCGA-FS-A1YW-06 11 56511057 56511057 G A OR9G4 Silent p.F77F 0.45 TCGA-FS-A1YW-06 11 58275040 58275040 G A OR5B21 Missense_Mutation p.P180L 0.37 deleterious_low_confidence(0.03) benign(0.072) TCGA-FS-A1YW-06 11 6190887 6190887 G A OR52B2 Missense_Mutation p.L224F 0.38 deleterious(0.02) probably_damaging(1) TCGA-FS-A1YW-06 11 6477849 6477849 C T TRIM3 Silent p.P369P 0.56 TCGA-FS-A1YW-06 11 72297156 72297156 G A PDE2A Silent p.T380T 0.21 TCGA-FS-A1YW-06 11 7334696 7334696 G A SYT9 Missense_Mutation p.E190K 0.32 deleterious(0.01) benign(0.219) TCGA-FS-A1YW-06 12 10312430 10312430 C T OLR1 3'UTR 0.54 TCGA-FS-A1YW-06 12 110781221 110781221 C T ATP2A2 Missense_Mutation p.R835C 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 12 111785344 111785344 G A CUX2 Missense_Mutation p.E1226K 0.42 deleterious(0) probably_damaging(0.973) TCGA-FS-A1YW-06 12 118199251 118199251 G A KSR2 Missense_Mutation p.P184L 0.41 tolerated(0.18) benign(0.006) TCGA-FS-A1YW-06 12 130926629 130926629 G A RIMBP2 Missense_Mutation p.S406F 0.47 deleterious(0) probably_damaging(0.99) TCGA-FS-A1YW-06 12 41949548 41949548 G A PDZRN4 Missense_Mutation p.D451N 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 12 55641256 55641256 G A OR6C74 Missense_Mutation p.R62Q 0.43 tolerated_low_confidence(0.17) benign(0.03) TCGA-FS-A1YW-06 12 55714500 55714500 G A OR6C1 Silent p.G39G 0.48 TCGA-FS-A1YW-06 12 57348854 57348854 C T RDH16 Silent p.V136V 0.48 TCGA-FS-A1YW-06 12 65461507 65461507 G A WIF1 Missense_Mutation p.P201L 0.27 tolerated(0.06) benign(0.015) TCGA-FS-A1YW-06 12 71139839 71139839 G A PTPRR Nonsense_Mutation p.Q256* 0.36 TCGA-FS-A1YW-06 13 25435510 25435510 C T RNF17 Silent p.L1293L 0.36 TCGA-FS-A1YW-06 13 35747690 35747690 C T NBEA Nonsense_Mutation p.Q1505* 0.17 TCGA-FS-A1YW-06 13 39343808 39343808 C T FREM2 Missense_Mutation p.A1835V 0.21 deleterious(0) benign(0.289) TCGA-FS-A1YW-06 13 39343809 39343809 C T FREM2 Silent p.A1835A 0.23 TCGA-FS-A1YW-06 13 52035102 52035102 C T RPS4XP16 RNA 0.21 TCGA-FS-A1YW-06 13 73305505 73305505 T A BORA Silent p.A80A 0.59 TCGA-FS-A1YW-06 14 22671215 22671215 C T TRAV26-2 Missense_Mutation p.R94C 0.39 deleterious(0.01) possibly_damaging(0.59) TCGA-FS-A1YW-06 14 23502818 23502818 C A PSMB5 Missense_Mutation p.Q88H 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1YW-06 14 51223836 51223836 G A NIN Silent p.F1304F 0.43 TCGA-FS-A1YW-06 14 53066835 53066835 C T GPR137C Silent p.L165L 0.49 TCGA-FS-A1YW-06 14 65270322 65270322 C T SPTB Intron 0.37 TCGA-FS-A1YW-06 14 68028700 68028700 C T PLEKHH1 Silent p.S151S 0.52 TCGA-FS-A1YW-06 14 73783131 73783131 C T NUMB Splice_Site p.X68_splice 0.38 TCGA-FS-A1YW-06 14 74422197 74422197 C T COQ6 Silent p.A114A 0.45 TCGA-FS-A1YW-06 14 96949519 96949519 T A AK7 Missense_Mutation p.V646E 0.30 tolerated(1) benign(0.002) TCGA-FS-A1YW-06 15 102346044 102346044 G A OR4F6 Missense_Mutation p.G41E 0.42 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-FS-A1YW-06 15 23811097 23811097 C T MKRN3 Silent p.A56A 0.27 TCGA-FS-A1YW-06 15 25331750 25331750 C T SNORD116-19 RNA 0.37 TCGA-FS-A1YW-06 15 31776565 31776565 G C OTUD7A Missense_Mutation p.S571R 0.41 tolerated(0.16) possibly_damaging(0.599) TCGA-FS-A1YW-06 15 32929996 32929996 C T ARHGAP11A Missense_Mutation p.P1008S 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 15 40901081 40901081 C T CASC5 Nonsense_Mutation p.R58* 0.46 TCGA-FS-A1YW-06 15 45561731 45561731 T A SLC28A2 Missense_Mutation p.S522T 0.46 tolerated(0.08) probably_damaging(0.948) TCGA-FS-A1YW-06 15 80478571 80478571 G A FAH 3'UTR 0.51 TCGA-FS-A1YW-06 15 85165085 85165085 G A ZSCAN2 Silent p.L553L 0.42 TCGA-FS-A1YW-06 15 95019952 95019952 G A MCTP2 Missense_Mutation p.R833Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1YW-06 16 31476161 31476161 C T ARMC5 Missense_Mutation p.P606L 0.52 tolerated(0.18) possibly_damaging(0.509) TCGA-FS-A1YW-06 16 49430546 49430546 G A C16orf78 Missense_Mutation p.E203K 0.41 deleterious(0.01) possibly_damaging(0.877) TCGA-FS-A1YW-06 16 61935342 61935342 G A CDH8 Silent p.I96I 0.28 TCGA-FS-A1YW-06 16 74685906 74685906 A G RFWD3 Silent p.S211S 0.38 TCGA-FS-A1YW-06 16 90025426 90025426 C T DEF8 Missense_Mutation p.P187L 0.23 deleterious(0.03) probably_damaging(0.969) TCGA-FS-A1YW-06 17 10531887 10531890 CACA GAT MYH3 3'UTR 0.36 TCGA-FS-A1YW-06 17 27959023 27959023 G C SSH2 Missense_Mutation p.S1036R 0.42 deleterious_low_confidence(0.01) benign(0.141) TCGA-FS-A1YW-06 17 36064997 36064997 G A HNF1B Silent p.L422L 0.39 TCGA-FS-A1YW-06 17 43246477 43246477 G A HEXIM2 Silent p.E54E 0.38 TCGA-FS-A1YW-06 17 43246478 43246478 G A HEXIM2 Missense_Mutation p.D55N 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.474) TCGA-FS-A1YW-06 17 51902427 51902427 G A KIF2B 3'UTR 0.32 TCGA-FS-A1YW-06 17 56342209 56342209 C T LPO Missense_Mutation p.R465C 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 17 56350985 56350985 C T MPO Missense_Mutation p.A471T 0.48 tolerated(0.48) benign(0.062) TCGA-FS-A1YW-06 17 61562671 61562671 G A ACE Missense_Mutation p.E666K 0.29 tolerated(0.59) benign(0.044) TCGA-FS-A1YW-06 17 6599122 6599122 C T SLC13A5 Silent p.L326L 0.81 TCGA-FS-A1YW-06 17 71348646 71348646 G A SDK2 Silent p.F1908F 0.63 TCGA-FS-A1YW-06 17 72518828 72518828 C T CD300LB 3'UTR 0.39 TCGA-FS-A1YW-06 17 80213335 80213335 G A CSNK1D Silent p.L102L 0.31 TCGA-FS-A1YW-06 17 8053945 8053945 G A PER1 Missense_Mutation p.S27F 0.51 deleterious(0) possibly_damaging(0.613) TCGA-FS-A1YW-06 18 21489122 21489122 A G LAMA3 Missense_Mutation p.K2341E 0.36 possibly_damaging(0.491) TCGA-FS-A1YW-06 18 28574047 28574047 C T DSC3 3'UTR 0.60 TCGA-FS-A1YW-06 18 28711866 28711866 C T DSC1 Intron 0.38 TCGA-FS-A1YW-06 18 9281083 9281083 C T ANKRD12 Missense_Mutation p.L2050F 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1YW-06 18 9887014 9887014 C T TXNDC2 Missense_Mutation p.P180S 0.34 tolerated(0.67) benign(0.268) TCGA-FS-A1YW-06 19 11623974 11623974 G A ECSIT Missense_Mutation p.P212L 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 19 15164549 15164549 C T CASP14 Silent p.F61F 0.41 TCGA-FS-A1YW-06 19 16275623 16275623 C T CIB3 Missense_Mutation p.E150K 0.45 tolerated(0.18) possibly_damaging(0.676) TCGA-FS-A1YW-06 19 17922801 17922801 C T B3GNT3 Missense_Mutation p.S330F 0.33 deleterious(0) possibly_damaging(0.847) TCGA-FS-A1YW-06 19 18968188 18968188 C T UPF1 Silent p.A676A 0.40 TCGA-FS-A1YW-06 19 23159477 23159477 A T ZNF728 Missense_Mutation p.I221N 0.52 deleterious(0.02) benign(0.387) TCGA-FS-A1YW-06 19 33695571 33695571 C T LRP3 Silent p.S96S 0.41 TCGA-FS-A1YW-06 19 38126524 38126524 G A ZFP30 Silent p.A306A 0.45 TCGA-FS-A1YW-06 19 42351543 42351543 C A DMRTC2 Missense_Mutation p.S16Y 0.44 tolerated(0.18) possibly_damaging(0.653) TCGA-FS-A1YW-06 19 42880268 42880268 G A MEGF8 Missense_Mutation p.A2560T 0.35 tolerated(0.58) benign(0.001) TCGA-FS-A1YW-06 19 43234047 43234047 C T PSG3 Missense_Mutation p.E291K 0.30 tolerated(0.77) benign(0.042) TCGA-FS-A1YW-06 19 44096256 44096256 G A IRGQ Silent p.H598H 0.10 TCGA-FS-A1YW-06 19 44739804 44739804 C T ZNF227 Silent p.P407P 0.49 TCGA-FS-A1YW-06 19 46094942 46094942 G A GPR4 Silent p.I61I 0.38 TCGA-FS-A1YW-06 19 51883515 51883515 C T LIM2 Silent p.G196G 0.43 TCGA-FS-A1YW-06 19 52250217 52250217 T G FPR1 Missense_Mutation p.I11L 0.52 tolerated(0.33) benign(0) TCGA-FS-A1YW-06 19 52887585 52887585 G A ZNF880 Missense_Mutation p.R251Q 0.60 tolerated(1) benign(0.003) TCGA-FS-A1YW-06 19 53303978 53303978 G A ZNF28 Missense_Mutation p.R374C 0.47 tolerated(0.06) benign(0.002) TCGA-FS-A1YW-06 19 53611856 53611856 G A ZNF415 Missense_Mutation p.S481L 0.42 deleterious(0.04) possibly_damaging(0.895) TCGA-FS-A1YW-06 19 8842008 8842008 C T OR2Z1 Silent p.I206I 0.42 TCGA-FS-A1YW-06 19 8993398 8993398 C T MUC16 Silent p.L13897L 0.30 TCGA-FS-A1YW-06 1 100949997 100949997 G A CDC14A Missense_Mutation p.R376Q 0.36 tolerated(0.16) benign(0.006) TCGA-FS-A1YW-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.45 deleterious(0.01) benign(0.045) TCGA-FS-A1YW-06 1 154685944 154685944 G A KCNN3 Missense_Mutation p.S632F 0.33 deleterious(0) possibly_damaging(0.667) TCGA-FS-A1YW-06 1 155145290 155145291 - G RP11-201K10.3 Frame_Shift_Ins p.S96Vfs*38 0.40 TCGA-FS-A1YW-06 1 155175012 155175012 G A THBS3 Nonsense_Mutation p.R128* 0.18 TCGA-FS-A1YW-06 1 156909492 156909492 G C ARHGEF11 Missense_Mutation p.P1315R 0.63 deleterious_low_confidence(0.01) benign(0.305) TCGA-FS-A1YW-06 1 158326491 158326491 G A CD1E Intron 0.40 TCGA-FS-A1YW-06 1 158368849 158368849 G A OR10T2 Silent p.I136I 0.41 TCGA-FS-A1YW-06 1 158596698 158596698 A G SPTA1 Silent p.L1922L 0.37 TCGA-FS-A1YW-06 1 162731078 162731078 T G DDR2 Missense_Mutation p.S311R 0.31 tolerated(0.44) benign(0.063) TCGA-FS-A1YW-06 1 170967503 170967503 C T MROH9 Intron 0.47 TCGA-FS-A1YW-06 1 173552686 173552686 C T SLC9C2 Missense_Mutation p.G200E 0.43 tolerated(0.51) benign(0.376) TCGA-FS-A1YW-06 1 17942552 17942552 C T ARHGEF10L Intron 0.82 TCGA-FS-A1YW-06 1 181765865 181765865 G A CACNA1E Silent p.K2090K 0.48 TCGA-FS-A1YW-06 1 198682180 198682180 C T PTPRC Missense_Mutation p.L424F 0.24 tolerated(0.48) benign(0.033) TCGA-FS-A1YW-06 1 198711436 198711436 G A PTPRC Silent p.V879V 0.41 TCGA-FS-A1YW-06 1 207640026 207640026 G A CR2 Missense_Mutation p.D72N 0.32 tolerated(0.72) benign(0) TCGA-FS-A1YW-06 1 226019497 226019497 C T EPHX1 Silent p.I67I 0.38 TCGA-FS-A1YW-06 1 230937390 230937390 G A CAPN9 3'UTR 0.47 TCGA-FS-A1YW-06 1 231339639 231339639 G A TRIM67 Missense_Mutation p.E521K 0.37 deleterious(0) possibly_damaging(0.829) TCGA-FS-A1YW-06 1 45484195 45484195 G A ZSWIM5 Silent p.I1163I 0.40 TCGA-FS-A1YW-06 1 47606542 47606542 C T CYP4A22 Missense_Mutation p.R96C 0.36 tolerated(0.08) possibly_damaging(0.848) TCGA-FS-A1YW-06 1 62594552 62594552 G A INADL Missense_Mutation p.D1736N 0.39 deleterious(0) probably_damaging(0.936) TCGA-FS-A1YW-06 1 77672386 77672386 G A PIGK Nonsense_Mutation p.R60* 0.36 TCGA-FS-A1YW-06 1 85595757 85595757 A C WDR63 Missense_Mutation p.K832Q 0.42 tolerated(0.11) possibly_damaging(0.461) TCGA-FS-A1YW-06 1 98144692 98144692 G A DPYD Missense_Mutation p.T270I 0.31 deleterious(0.02) benign(0.046) TCGA-FS-A1YW-06 21 44323607 44323607 C T NDUFV3 Missense_Mutation p.S162F 0.47 deleterious(0) probably_damaging(0.999) TCGA-FS-A1YW-06 22 50167966 50167966 G A BRD1 Missense_Mutation p.A1031V 0.72 deleterious(0) possibly_damaging(0.654) TCGA-FS-A1YW-06 22 50903030 50903030 C T SBF1 Silent p.K523K 0.82 TCGA-FS-A1YW-06 2 11696639 11696639 C T GREB1 5'UTR 0.70 TCGA-FS-A1YW-06 2 140995774 140995774 C T LRP1B Missense_Mutation p.D4503N 0.70 possibly_damaging(0.539) TCGA-FS-A1YW-06 2 179431635 179431635 G A TTN Silent p.N26408N 0.71 TCGA-FS-A1YW-06 2 186670597 186670597 G A FSIP2 Missense_Mutation p.E5611K 0.69 benign(0.042) TCGA-FS-A1YW-06 2 201438005 201438005 C T SGOL2 Missense_Mutation p.S979F 0.76 deleterious(0.02) benign(0.407) TCGA-FS-A1YW-06 2 228886527 228886527 C T SPHKAP Silent p.L199L 0.56 TCGA-FS-A1YW-06 2 240984604 240984604 C T OR6B3 Missense_Mutation p.E296K 0.78 deleterious(0.01) benign(0.178) TCGA-FS-A1YW-06 2 85051283 85051283 G A TRABD2A Silent p.I327I 0.83 TCGA-FS-A1YW-06 2 89327187 89327187 C T IGKV3-11 5'UTR 0.65 TCGA-FS-A1YW-06 3 124416470 124416470 C T AC080008.1 5'Flank 0.42 TCGA-FS-A1YW-06 3 124438176 124438176 C T RP11-71H17.7 5'Flank 0.29 TCGA-FS-A1YW-06 3 151165385 151165385 T G IGSF10 Missense_Mutation p.D795A 0.34 tolerated(0.15) benign(0.227) TCGA-FS-A1YW-06 3 155241775 155241775 G A PLCH1 Missense_Mutation p.H449Y 0.45 tolerated(0.35) benign(0.024) TCGA-FS-A1YW-06 3 184059668 184059668 T G FAM131A Intron 0.40 TCGA-FS-A1YW-06 3 193002723 193002723 C T ATP13A5 Missense_Mutation p.R1069Q 0.41 deleterious(0) probably_damaging(0.988) TCGA-FS-A1YW-06 3 196281400 196281400 G A WDR53 Silent p.S253S 0.37 TCGA-FS-A1YW-06 3 38921496 38921496 C T SCN11A Missense_Mutation p.G1113E 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 3 52023165 52023165 C G ACY1 3'Flank 0.46 TCGA-FS-A1YW-06 3 52825798 52825798 G A ITIH1 Silent p.R869R 0.26 TCGA-FS-A1YW-06 3 56469066 56469066 G A ERC2 5'UTR 0.36 TCGA-FS-A1YW-06 3 89462288 89462288 C A EPHA3 Intron 0.51 TCGA-FS-A1YW-06 4 100260777 100260777 C T ADH1C Missense_Mutation p.E354K 0.36 possibly_damaging(0.555) TCGA-FS-A1YW-06 4 120427082 120427082 C T PDE5A Missense_Mutation p.R732Q 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 4 158057765 158057765 G A GLRB Missense_Mutation p.E148K 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A1YW-06 4 170601278 170601278 C T CLCN3 Missense_Mutation p.P80S 0.52 tolerated(0.05) probably_damaging(0.995) TCGA-FS-A1YW-06 4 20599960 20599960 C T SLIT2 Missense_Mutation p.R1212W 0.38 deleterious(0) possibly_damaging(0.906) TCGA-FS-A1YW-06 4 48078475 48078475 C T TXK Silent p.R394R 0.46 TCGA-FS-A1YW-06 4 502700 502700 C T PIGG Missense_Mutation p.S281F 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 4 5843034 5843034 C T CRMP1 Splice_Site p.X385_splice 0.43 TCGA-FS-A1YW-06 4 71024045 71024045 G A C4orf40 Missense_Mutation p.D26N 0.30 deleterious(0.04) possibly_damaging(0.51) TCGA-FS-A1YW-06 4 79768397 79768397 C T BMP2K Missense_Mutation p.P242S 0.61 tolerated(0.23) benign(0.345) TCGA-FS-A1YW-06 4 8217959 8217959 C T SH3TC1 Silent p.T201T 0.45 TCGA-FS-A1YW-06 5 13885323 13885323 C T DNAH5 Missense_Mutation p.G920R 0.24 probably_damaging(0.953) TCGA-FS-A1YW-06 5 140166149 140166149 C A PCDHA1 Missense_Mutation p.R92S 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1YW-06 5 140209955 140209955 C T PCDHA6 Missense_Mutation p.S760F 0.42 deleterious_low_confidence(0.01) benign(0.263) TCGA-FS-A1YW-06 5 140475273 140475273 C T PCDHB2 Missense_Mutation p.S300L 0.33 tolerated_low_confidence(0.05) probably_damaging(0.971) TCGA-FS-A1YW-06 5 140481738 140481738 C T PCDHB3 Missense_Mutation p.S502F 0.43 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-FS-A1YW-06 5 140579467 140579467 G A PCDHB11 Silent p.Q40Q 0.35 TCGA-FS-A1YW-06 5 140754042 140754042 C T PCDHGA6 Missense_Mutation p.P131L 0.41 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-FS-A1YW-06 5 147486618 147486618 C T SPINK5 Missense_Mutation p.R500W 0.43 deleterious(0.02) benign(0.069) TCGA-FS-A1YW-06 5 148619383 148619383 C T ABLIM3 Missense_Mutation p.S379F 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1YW-06 5 16067654 16067654 G A MARCH11 Missense_Mutation p.R379W 0.44 deleterious(0) probably_damaging(0.96) TCGA-FS-A1YW-06 5 163580 163580 C T PLEKHG4B Silent p.S775S 0.38 TCGA-FS-A1YW-06 5 17275459 17275459 C T BASP1 Missense_Mutation p.A45V 0.40 tolerated(0.19) unknown(0) TCGA-FS-A1YW-06 5 173317642 173317642 C G CPEB4 Silent p.G302G 0.32 TCGA-FS-A1YW-06 5 173317643 173317643 G T CPEB4 Missense_Mutation p.G303C 0.34 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-FS-A1YW-06 5 54603704 54603704 G - SKIV2L2 5'UTR 0.33 TCGA-FS-A1YW-06 5 9052067 9052067 G A SEMA5A Silent p.I921I 0.29 TCGA-FS-A1YW-06 6 130530752 130530752 A C SAMD3 Missense_Mutation p.Y91D 0.68 tolerated_low_confidence(0.21) benign(0) TCGA-FS-A1YW-06 6 132910108 132910108 G A TAAR5 Silent p.L240L 0.68 TCGA-FS-A1YW-06 6 132910109 132910109 G A TAAR5 Silent p.S239S 0.68 TCGA-FS-A1YW-06 6 25726674 25726674 C T HIST1H2AA Missense_Mutation p.V28I 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-FS-A1YW-06 6 29231821 29231821 G A XXbac-BPG308J9.3 RNA 0.34 TCGA-FS-A1YW-06 6 31127306 31127306 C T TCF19 Silent p.T20T 0.47 TCGA-FS-A1YW-06 6 31749631 31749631 G A VARS Silent p.L780L 0.42 TCGA-FS-A1YW-06 6 38691132 38691132 G A DNAH8 5'UTR 0.60 TCGA-FS-A1YW-06 6 42235936 42235936 C T TRERF1 Missense_Mutation p.G465R 0.26 tolerated_low_confidence(0.12) probably_damaging(0.953) TCGA-FS-A1YW-06 6 90368015 90368015 G A MDN1 Silent p.S5032S 0.29 TCGA-FS-A1YW-06 6 96651941 96651941 G A FUT9 Missense_Mutation p.E304K 0.22 tolerated(0.3) benign(0.001) TCGA-FS-A1YW-06 7 102195024 102195024 G A SPDYE2 Missense_Mutation p.A127T 0.29 tolerated(0.11) benign(0.113) TCGA-FS-A1YW-06 7 138432306 138432306 G A ATP6V0A4 Missense_Mutation p.P395L 0.38 tolerated(1) probably_damaging(1) TCGA-FS-A1YW-06 7 138437391 138437391 C T ATP6V0A4 Silent p.K336K 0.33 TCGA-FS-A1YW-06 7 142247149 142247149 G A TRBV7-3 Missense_Mutation p.R103W 0.32 TCGA-FS-A1YW-06 7 143826661 143826661 C T OR2A14 Silent p.F152F 0.45 TCGA-FS-A1YW-06 7 30821777 30821777 C T FAM188B Missense_Mutation p.S123L 0.23 tolerated(0.07) benign(0.022) TCGA-FS-A1YW-06 7 53103886 53103886 C T POM121L12 Silent p.T174T 0.34 TCGA-FS-A1YW-06 7 71175806 71175806 C T WBSCR17 Missense_Mutation p.L521F 0.33 tolerated(0.66) possibly_damaging(0.466) TCGA-FS-A1YW-06 7 76019258 76019258 C T SRCRB4D 3'UTR 0.38 TCGA-FS-A1YW-06 8 110592247 110592247 G A SYBU Intron 0.33 TCGA-FS-A1YW-06 8 140630869 140630869 C T KCNK9 Missense_Mutation p.D253N 0.73 deleterious(0) possibly_damaging(0.548) TCGA-FS-A1YW-06 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.20 tolerated(0.06) benign(0.052) TCGA-FS-A1YW-06 8 17739657 17739657 C T FGL1 Missense_Mutation p.R32Q 0.32 deleterious(0.05) benign(0.341) TCGA-FS-A1YW-06 8 31000192 31000192 C T WRN Missense_Mutation p.P1095L 0.40 tolerated(0.11) benign(0.005) TCGA-FS-A1YW-06 8 31024688 31024688 C T WRN Missense_Mutation p.S1378F 0.30 deleterious(0.03) possibly_damaging(0.786) TCGA-FS-A1YW-06 8 56270377 56270377 C T XKR4 Missense_Mutation p.P316S 0.35 deleterious(0) possibly_damaging(0.779) TCGA-FS-A1YW-06 8 59409271 59409271 A T CYP7A1 Nonsense_Mutation p.L267* 0.58 TCGA-FS-A1YW-06 8 62212398 62212398 C T CLVS1 Silent p.V4V 0.17 TCGA-FS-A1YW-06 8 74203428 74203428 G A RPL7 Missense_Mutation p.R200C 0.28 tolerated(0.42) benign(0) TCGA-FS-A1YW-06 8 74939051 74939051 C T LY96 Missense_Mutation p.S120F 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 8 76468232 76468232 G A HNF4G Missense_Mutation p.A211T 0.72 tolerated(0.06) possibly_damaging(0.803) TCGA-FS-A1YW-06 8 91937824 91937824 C T NECAB1 Nonsense_Mutation p.R186* 0.61 TCGA-FS-A1YW-06 9 104071546 104071546 G C LPPR1 Missense_Mutation p.V147L 0.69 tolerated(0.09) benign(0.176) TCGA-FS-A1YW-06 9 137622145 137622145 G A COL5A1 Missense_Mutation p.E330K 0.67 benign(0.029) TCGA-FS-A1YW-06 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.72 TCGA-FS-A1YW-06 9 37708479 37708479 C T FRMPD1 Nonsense_Mutation p.R115* 0.10 TCGA-FS-A1YW-06 9 78638727 78638727 G A PCSK5 Missense_Mutation p.G162E 0.74 deleterious(0) probably_damaging(1) TCGA-FS-A1YW-06 X 103268042 103268042 C T H2BFWT Missense_Mutation p.R64Q 0.79 tolerated(0.54) benign(0.005) TCGA-FS-A1YW-06 X 149887149 149887149 C T MTMR1 Missense_Mutation p.P102L 0.72 deleterious(0) possibly_damaging(0.901) TCGA-FS-A1YW-06 X 3228149 3228149 G A MXRA5 Missense_Mutation p.R2699C 0.82 deleterious(0) probably_damaging(0.969) TCGA-FS-A1YW-06 X 53620471 53620471 G A HUWE1 Silent p.F1198F 0.96 TCGA-FS-A1YW-06 X 70784520 70784520 G A OGT Missense_Mutation p.G836R 0.90 tolerated(0.07) probably_damaging(0.96) TCGA-FS-A1YX-06 10 26463096 26463096 G A MYO3A Missense_Mutation p.M1301I 0.55 tolerated_low_confidence(0.08) benign(0) TCGA-FS-A1YX-06 10 26463097 26463097 G A MYO3A Missense_Mutation p.E1302K 0.57 tolerated_low_confidence(0.1) benign(0.009) TCGA-FS-A1YX-06 11 103114419 103114419 T C DYNC2H1 Intron 0.42 TCGA-FS-A1YX-06 11 121178150 121178150 C T SC5D Missense_Mutation p.R277C 0.31 tolerated(0.25) benign(0) TCGA-FS-A1YX-06 11 30944050 30944050 C T DCDC1 Missense_Mutation p.A1045T 0.36 tolerated(0.31) possibly_damaging(0.682) TCGA-FS-A1YX-06 11 92523221 92523221 A C FAT3 Missense_Mutation p.E1483A 0.40 benign(0.439) TCGA-FS-A1YX-06 14 70991372 70991372 G T ADAM20 Missense_Mutation p.Q85K 0.54 deleterious(0.02) benign(0.198) TCGA-FS-A1YX-06 14 95111314 95111314 C A SERPINA13P RNA 0.50 TCGA-FS-A1YX-06 16 28943670 28943670 G A CD19 Missense_Mutation p.G31E 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A1YX-06 17 38976882 38976882 C T KRT10 Missense_Mutation p.A250T 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1YX-06 17 40761321 40761321 G C FAM134C Missense_Mutation p.P8A 0.27 tolerated_low_confidence(1) benign(0) TCGA-FS-A1YX-06 17 49279428 49279428 C T MBTD1 Silent p.K358K 0.29 TCGA-FS-A1YX-06 17 56565264 56565264 G A HSF5 Silent p.L124L 0.10 TCGA-FS-A1YX-06 19 39001158 39001158 C T RYR1 Nonsense_Mutation p.R2985* 0.32 TCGA-FS-A1YX-06 19 56423975 56423975 C T NLRP13 Missense_Mutation p.S403N 0.39 tolerated(0.74) benign(0.001) TCGA-FS-A1YX-06 1 247614382 247614382 C T OR2B11 Missense_Mutation p.M301I 0.29 deleterious(0.03) benign(0) TCGA-FS-A1YX-06 21 45709924 45709924 C T AIRE Silent p.A284A 0.30 TCGA-FS-A1YX-06 2 234749833 234749833 G T HJURP Missense_Mutation p.H531Q 0.41 tolerated(0.61) benign(0.047) TCGA-FS-A1YX-06 5 140516880 140516880 G A PCDHB5 Missense_Mutation p.E622K 0.51 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-FS-A1YX-06 5 2752737 2752742 TTTGTG - C5orf38 In_Frame_Del p.F68_V69del 0.26 TCGA-FS-A1YX-06 5 71491677 71491677 C T MAP1B Missense_Mutation p.S832F 0.10 probably_damaging(0.991) TCGA-FS-A1YX-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.77 deleterious(0) probably_damaging(0.967) TCGA-FS-A1YX-06 7 142983274 142983274 C A TMEM139 Missense_Mutation p.P75Q 0.37 tolerated(0.1) probably_damaging(0.931) TCGA-FS-A1YX-06 7 47698645 47698646 - A C7orf65 Frame_Shift_Ins p.I93Nfs*32 0.27 TCGA-FS-A1YX-06 7 54820004 54820004 A C SEC61G 3'UTR 0.50 TCGA-FS-A1YX-06 7 86468997 86468997 C T GRM3 Missense_Mutation p.R723W 0.75 deleterious(0) probably_damaging(1) TCGA-FS-A1YX-06 8 68152466 68152468 AGT - ARFGEF1 In_Frame_Del p.T970del 0.31 TCGA-FS-A1YX-06 8 82714665 82714665 C T SNX16 Silent p.V296V 0.39 TCGA-FS-A1YX-06 X 106844215 106844215 G A FRMPD3 Silent p.R1015R 0.26 TCGA-FS-A1YX-06 X 106844216 106844216 G A FRMPD3 Missense_Mutation p.G1016S 0.26 deleterious_low_confidence(0.04) benign(0.182) TCGA-FS-A1YX-06 X 135427555 135427555 T A GPR112 Missense_Mutation p.S564T 0.18 tolerated(0.1) benign(0.002) TCGA-FS-A1YX-06 X 151128359 151128359 C A GABRE Missense_Mutation p.D246Y 0.32 deleterious(0.03) benign(0.029) TCGA-FS-A1YX-06 X 89177411 89177411 C A TGIF2LX Silent p.L109L 0.35 TCGA-FS-A1YY-06 10 103310575 103310575 C T BTRC Silent p.P592P 0.47 TCGA-FS-A1YY-06 10 134906625 134906625 G A GPR123 Intron 0.64 TCGA-FS-A1YY-06 10 134910573 134910573 G A GPR123 Silent p.L33L 0.48 TCGA-FS-A1YY-06 10 20335859 20335859 G A PLXDC2 Missense_Mutation p.R129Q 0.32 tolerated(0.18) possibly_damaging(0.73) TCGA-FS-A1YY-06 10 5541195 5541195 G A CALML5 Silent p.F69F 0.31 TCGA-FS-A1YY-06 10 5995144 5995144 C T IL15RA Missense_Mutation p.E240K 0.43 deleterious(0) benign(0.298) TCGA-FS-A1YY-06 10 61007471 61007471 G A FAM13C Missense_Mutation p.P554L 0.63 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 10 89264929 89264929 T G MINPP1 Missense_Mutation p.L86R 0.50 deleterious(0) possibly_damaging(0.892) TCGA-FS-A1YY-06 11 120957608 120957608 C T TBCEL Missense_Mutation p.R360C 0.31 tolerated(0.07) probably_damaging(0.988) TCGA-FS-A1YY-06 11 123777609 123777609 G A OR8D4 Silent p.V157V 0.40 TCGA-FS-A1YY-06 11 132205065 132205065 G A NTM 3'UTR 0.22 TCGA-FS-A1YY-06 11 14992719 14992719 G A CALCA Missense_Mutation p.S7F 0.33 tolerated(0.07) benign(0.037) TCGA-FS-A1YY-06 11 16877421 16877421 G A PLEKHA7 Missense_Mutation p.P116S 0.36 tolerated(0.35) probably_damaging(0.998) TCGA-FS-A1YY-06 11 4703846 4703846 G A OR51E2 Silent p.S32S 0.35 TCGA-FS-A1YY-06 11 48510798 48510798 C T OR4A47 Silent p.L152L 0.31 TCGA-FS-A1YY-06 11 5020909 5020909 C T OR51L1 Missense_Mutation p.R233C 0.35 deleterious(0.03) possibly_damaging(0.806) TCGA-FS-A1YY-06 11 5255401 5255401 G A HBD Silent p.S45S 0.31 TCGA-FS-A1YY-06 11 55136340 55136340 G A OR4A15 Silent p.R327R 0.40 TCGA-FS-A1YY-06 11 55321908 55321908 G A OR4C15 Missense_Mutation p.M42I 0.38 tolerated_low_confidence(0.08) benign(0.001) TCGA-FS-A1YY-06 11 5776500 5776500 C T OR52N4 Missense_Mutation p.P177L 0.35 deleterious(0.02) benign(0.008) TCGA-FS-A1YY-06 11 64026164 64026164 C T PLCB3 Missense_Mutation p.S411F 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 11 7111505 7111505 G A RBMXL2 Missense_Mutation p.R385K 0.43 tolerated(0.13) unknown(0) TCGA-FS-A1YY-06 11 92715029 92715029 G A MTNR1B Missense_Mutation p.A214T 0.45 tolerated(0.97) benign(0.021) TCGA-FS-A1YY-06 12 112492209 112492209 G A NAA25 Silent p.I537I 0.28 TCGA-FS-A1YY-06 12 120575810 120575810 G A GCN1L1 Silent p.F2096F 0.22 TCGA-FS-A1YY-06 12 124414959 124414959 G A DNAH10 Missense_Mutation p.G4090E 0.26 probably_damaging(1) TCGA-FS-A1YY-06 12 2224481 2224481 G A CACNA1C Silent p.G47G 0.42 TCGA-FS-A1YY-06 12 43846162 43846162 T C ADAMTS20 Missense_Mutation p.Y665C 0.37 deleterious(0.02) possibly_damaging(0.451) TCGA-FS-A1YY-06 12 49427579 49427579 G A KMT2D Missense_Mutation p.P3637S 0.26 probably_damaging(0.986) TCGA-FS-A1YY-06 12 49427580 49427580 G A KMT2D Silent p.L3636L 0.26 TCGA-FS-A1YY-06 12 53873281 53873281 C T PCBP2 3'UTR 0.35 TCGA-FS-A1YY-06 12 64828325 64828325 C T XPOT Nonsense_Mutation p.Q831* 0.24 TCGA-FS-A1YY-06 12 70954554 70954554 C T PTPRB Silent p.T1443T 0.27 TCGA-FS-A1YY-06 12 72425076 72425076 C T TPH2 Silent p.D401D 0.40 TCGA-FS-A1YY-06 12 80732982 80732982 G A OTOGL Missense_Mutation p.G1654E 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-FS-A1YY-06 13 25349022 25349022 G A RNF17 Missense_Mutation p.M99I 0.29 tolerated(0.46) benign(0.38) TCGA-FS-A1YY-06 13 30805462 30805462 A G KATNAL1 Silent p.L292L 0.35 TCGA-FS-A1YY-06 13 52549113 52549113 G A ATP7B Silent p.S81S 0.35 TCGA-FS-A1YY-06 13 98666328 98666328 C T IPO5 Missense_Mutation p.L747F 0.35 tolerated(0.38) benign(0.011) TCGA-FS-A1YY-06 13 99092480 99092480 C T FARP1 Missense_Mutation p.P874S 0.40 tolerated(0.66) benign(0.009) TCGA-FS-A1YY-06 13 99092481 99092481 C T FARP1 Missense_Mutation p.P874L 0.41 tolerated(0.85) benign(0.064) TCGA-FS-A1YY-06 14 103470286 103470286 G A CDC42BPB Silent p.A142A 0.64 TCGA-FS-A1YY-06 14 103566849 103566849 G A EXOC3L4 Missense_Mutation p.G98D 0.09 tolerated(0.56) benign(0.009) TCGA-FS-A1YY-06 14 106053600 106053600 C T IGHA2 Missense_Mutation p.V233M 0.26 deleterious(0) probably_damaging(0.98) TCGA-FS-A1YY-06 14 51464813 51464813 C T TRIM9 Missense_Mutation p.G520R 0.48 deleterious(0) possibly_damaging(0.616) TCGA-FS-A1YY-06 14 59113545 59113545 A G DACT1 Missense_Mutation p.H735R 0.28 deleterious(0) probably_damaging(0.998) TCGA-FS-A1YY-06 14 80669025 80669025 C T DIO2 3'UTR 0.40 TCGA-FS-A1YY-06 14 92357594 92357594 G A FBLN5 Missense_Mutation p.T197I 0.35 tolerated(0.38) benign(0.002) TCGA-FS-A1YY-06 15 101718622 101718622 C T CHSY1 Silent p.G460G 0.31 TCGA-FS-A1YY-06 15 22473188 22473188 G A IGHV4OR15-8 Missense_Mutation p.P28L 0.20 deleterious(0) possibly_damaging(0.576) TCGA-FS-A1YY-06 15 25442574 25442574 G A SNORD115-14 3'Flank 0.33 TCGA-FS-A1YY-06 15 28519439 28519439 C T HERC2 Silent p.T266T 0.35 TCGA-FS-A1YY-06 15 45388058 45388058 G A DUOX2 Missense_Mutation p.P1350S 0.28 tolerated(0.08) benign(0.027) TCGA-FS-A1YY-06 15 58430712 58430712 G A AQP9 5'UTR 0.36 TCGA-FS-A1YY-06 15 62967500 62967500 G A TLN2 Missense_Mutation p.V313M 0.32 deleterious(0) probably_damaging(0.981) TCGA-FS-A1YY-06 15 64275881 64275881 C T DAPK2 Silent p.K55K 0.30 TCGA-FS-A1YY-06 15 74180077 74180077 G A TBC1D21 Silent p.L298L 0.31 TCGA-FS-A1YY-06 15 99669736 99669736 G A SYNM Missense_Mutation p.G390R 0.36 tolerated(0.15) benign(0.081) TCGA-FS-A1YY-06 15 99874192 99874192 C T LRRC28 Silent p.P150P 0.37 TCGA-FS-A1YY-06 16 10274114 10274114 C T GRIN2A Missense_Mutation p.R52Q 0.31 tolerated(0.05) probably_damaging(0.996) TCGA-FS-A1YY-06 16 31012906 31012906 C T STX1B Missense_Mutation p.E17K 0.37 tolerated(0.08) benign(0.031) TCGA-FS-A1YY-06 16 31092343 31092343 C T ZNF646 Silent p.F1566F 0.38 TCGA-FS-A1YY-06 16 3299632 3299632 G A MEFV Silent p.P353P 0.25 TCGA-FS-A1YY-06 16 4511823 4511823 G A NMRAL1 Silent p.D286D 0.36 TCGA-FS-A1YY-06 16 48125042 48125042 C T ABCC12 Missense_Mutation p.E1092K 0.33 deleterious(0.03) benign(0.013) TCGA-FS-A1YY-06 16 49669843 49669843 G A ZNF423 Missense_Mutation p.R1074C 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-FS-A1YY-06 16 56601683 56601683 G A MT4 Missense_Mutation p.D18N 0.33 tolerated(0.24) possibly_damaging(0.822) TCGA-FS-A1YY-06 16 57762339 57762339 A T CCDC135 Missense_Mutation p.E745V 0.28 deleterious(0.02) possibly_damaging(0.828) TCGA-FS-A1YY-06 16 66570869 66570869 G A TK2 Silent p.L95L 0.33 TCGA-FS-A1YY-06 16 68405851 68405851 C T SMPD3 Silent p.A78A 0.30 TCGA-FS-A1YY-06 16 71950427 71950427 C T IST1 Nonsense_Mutation p.R64* 0.27 TCGA-FS-A1YY-06 16 9862775 9862775 C T GRIN2A Nonsense_Mutation p.W843* 0.35 TCGA-FS-A1YY-06 17 10395708 10395708 G A MYH1 3'UTR 0.38 TCGA-FS-A1YY-06 17 19648353 19648353 C T ALDH3A1 Silent p.L30L 0.33 TCGA-FS-A1YY-06 17 25932546 25932546 G A KSR1 Silent p.R452R 0.70 TCGA-FS-A1YY-06 17 33586549 33586549 C T SLFN5 Silent p.F280F 0.31 TCGA-FS-A1YY-06 17 34859798 34859798 G A MYO19 Silent p.F656F 0.25 TCGA-FS-A1YY-06 17 36894641 36894641 G A PCGF2 Missense_Mutation p.L181F 0.31 deleterious(0) probably_damaging(0.969) TCGA-FS-A1YY-06 17 38188975 38188975 G C MED24 Missense_Mutation p.A288G 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-FS-A1YY-06 17 45895675 45895675 G A OSBPL7 Silent p.S186S 0.35 TCGA-FS-A1YY-06 17 48267704 48267704 C T COL1A1 Missense_Mutation p.G812D 0.38 unknown(0) TCGA-FS-A1YY-06 17 50008478 50008478 C T CA10 Missense_Mutation p.G51R 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 17 61566100 61566100 C T ACE Silent p.L799L 0.36 TCGA-FS-A1YY-06 17 7286211 7286211 G A TNK1 5'UTR 0.39 TCGA-FS-A1YY-06 17 8012520 8012520 C T ALOXE3 Missense_Mutation p.G644S 0.41 tolerated(0.11) probably_damaging(0.997) TCGA-FS-A1YY-06 18 29102174 29102174 G A DSG2 Missense_Mutation p.G218R 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 18 44559405 44559405 C T TCEB3B Missense_Mutation p.R744Q 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-FS-A1YY-06 18 56246229 56246229 C T ALPK2 Silent p.R593R 0.30 TCGA-FS-A1YY-06 18 59174649 59174649 C T CDH20 Silent p.S291S 0.15 TCGA-FS-A1YY-06 18 66564501 66564501 G A CCDC102B Missense_Mutation p.E367K 0.32 tolerated(0.05) possibly_damaging(0.839) TCGA-FS-A1YY-06 19 11145739 11145739 C T SMARCA4 Silent p.F1367F 0.28 TCGA-FS-A1YY-06 19 16902356 16902356 G A NWD1 Missense_Mutation p.E1046K 0.42 tolerated(0.06) benign(0.267) TCGA-FS-A1YY-06 19 18502870 18502870 G A LRRC25 Missense_Mutation p.P282L 0.40 deleterious(0) probably_damaging(0.972) TCGA-FS-A1YY-06 19 19337555 19337555 G A NCAN Missense_Mutation p.E445K 0.50 tolerated(0.07) benign(0.156) TCGA-FS-A1YY-06 19 19734998 19734998 G A LPAR2 3'UTR 0.30 TCGA-FS-A1YY-06 19 22363885 22363885 G A ZNF676 Missense_Mutation p.L212F 0.31 tolerated(0.09) probably_damaging(0.996) TCGA-FS-A1YY-06 19 23937634 23937634 C T ZNF681 Missense_Mutation p.E73K 0.42 tolerated(1) benign(0) TCGA-FS-A1YY-06 19 3452490 3452490 G A NFIC Silent p.R365R 0.25 TCGA-FS-A1YY-06 19 35837499 35837499 C T CD22 Missense_Mutation p.P815S 0.35 tolerated(0.15) benign(0.056) TCGA-FS-A1YY-06 19 3736223 3736223 G A TJP3 Silent p.L405L 0.45 TCGA-FS-A1YY-06 19 41021331 41021331 C T SPTBN4 Missense_Mutation p.S960F 0.47 deleterious(0.05) benign(0.145) TCGA-FS-A1YY-06 19 41622410 41622410 G A CYP2F1 Silent p.R74R 0.31 TCGA-FS-A1YY-06 19 43244578 43244578 T C PSG3 5'UTR 0.26 TCGA-FS-A1YY-06 19 43439606 43439606 C T PSG7 Missense_Mutation p.R127Q 0.22 tolerated(0.21) benign(0.04) TCGA-FS-A1YY-06 19 43762547 43762547 G A PSG9 Silent p.L350L 0.37 TCGA-FS-A1YY-06 19 43922358 43922358 G A TEX101 Missense_Mutation p.A205T 0.30 tolerated(0.29) benign(0.122) TCGA-FS-A1YY-06 19 51201136 51201136 C T SHANK1 Missense_Mutation p.E609K 0.34 benign(0.363) TCGA-FS-A1YY-06 19 52447376 52447376 C T ZNF613 Silent p.I80I 0.29 TCGA-FS-A1YY-06 19 56373464 56373464 G A NLRP4 Missense_Mutation p.D709N 0.65 tolerated(0.38) benign(0.009) TCGA-FS-A1YY-06 19 56413429 56413429 G A NLRP13 Missense_Mutation p.R921C 0.14 tolerated(0.1) benign(0.007) TCGA-FS-A1YY-06 19 56424336 56424336 C A NLRP13 Nonsense_Mutation p.E283* 0.14 TCGA-FS-A1YY-06 19 58005470 58005470 C T ZNF419 3'UTR 0.58 TCGA-FS-A1YY-06 19 8190879 8190879 G A FBN3 Silent p.F876F 0.31 TCGA-FS-A1YY-06 19 8194032 8194032 C T FBN3 Missense_Mutation p.D726N 0.35 tolerated(0.57) benign(0.168) TCGA-FS-A1YY-06 19 8808458 8808458 C T ACTL9 Silent p.T198T 0.37 TCGA-FS-A1YY-06 19 8969339 8969339 G A MUC16 Silent p.S14335S 0.42 TCGA-FS-A1YY-06 19 9019291 9019291 G A MUC16 Silent p.S12532S 0.24 TCGA-FS-A1YY-06 19 9048053 9048053 G A MUC16 Missense_Mutation p.S11193L 0.52 benign(0.092) TCGA-FS-A1YY-06 19 9070674 9070674 C T MUC16 Missense_Mutation p.G5591E 0.44 unknown(0) TCGA-FS-A1YY-06 1 109338903 109338903 C T STXBP3 Silent p.S386S 0.21 TCGA-FS-A1YY-06 1 115221019 115221019 C T AMPD1 Missense_Mutation p.E376K 0.35 deleterious(0.03) benign(0.174) TCGA-FS-A1YY-06 1 1226673 1226673 C T SCNN1D Silent p.L698L 0.82 TCGA-FS-A1YY-06 1 151220403 151220403 C T PIP5K1A 3'Flank 0.50 TCGA-FS-A1YY-06 1 152732718 152732718 C T KPRP Silent p.F218F 0.32 TCGA-FS-A1YY-06 1 156702139 156702139 C T RRNAD1 Silent p.T101T 0.21 TCGA-FS-A1YY-06 1 157803140 157803140 G T CD5L Missense_Mutation p.S294Y 0.32 tolerated(0.07) possibly_damaging(0.73) TCGA-FS-A1YY-06 1 158325195 158325195 C T CD1E Missense_Mutation p.S154F 0.35 deleterious(0) possibly_damaging(0.743) TCGA-FS-A1YY-06 1 162343729 162343729 G A C1orf111 3'UTR 0.41 TCGA-FS-A1YY-06 1 176671784 176671784 C T PAPPA2 Missense_Mutation p.A1093V 0.32 tolerated(0.59) benign(0.04) TCGA-FS-A1YY-06 1 197407902 197407902 C T CRB1 Intron 0.42 TCGA-FS-A1YY-06 1 204985617 204985617 G A NFASC Missense_Mutation p.E1225K 0.27 deleterious(0) unknown(0) TCGA-FS-A1YY-06 1 23743760 23743760 C T TCEA3 Missense_Mutation p.R121Q 0.50 tolerated(0.12) benign(0.002) TCGA-FS-A1YY-06 1 240964804 240964804 C T RGS7 Missense_Mutation p.G455E 0.14 tolerated(1) benign(0.001) TCGA-FS-A1YY-06 1 241904917 241904917 A G WDR64 Missense_Mutation p.N464S 0.31 deleterious(0) probably_damaging(0.915) TCGA-FS-A1YY-06 1 248262875 248262875 C T OR2L13 Silent p.S66S 0.30 TCGA-FS-A1YY-06 1 248367245 248367245 C A OR2M3 Silent p.L292L 0.37 TCGA-FS-A1YY-06 1 26899811 26899811 C T RPS6KA1 Missense_Mutation p.P691S 0.53 tolerated(0.58) benign(0.078) TCGA-FS-A1YY-06 1 34006741 34006741 G A CSMD2 Missense_Mutation p.P3005L 0.52 deleterious(0) possibly_damaging(0.651) TCGA-FS-A1YY-06 1 3542430 3542430 G A TPRG1L Silent p.Q149Q 0.56 TCGA-FS-A1YY-06 1 37291238 37291238 G T GRIK3 Missense_Mutation p.L574M 0.41 tolerated(0.09) probably_damaging(0.996) TCGA-FS-A1YY-06 1 40539851 40539851 C T PPT1 Missense_Mutation p.R268H 0.07 tolerated(0.13) benign(0.051) TCGA-FS-A1YY-06 1 70819825 70819825 G A ANKRD13C Silent p.S89S 0.33 TCGA-FS-A1YY-06 1 70819826 70819826 G A ANKRD13C Missense_Mutation p.S89F 0.34 deleterious_low_confidence(0.01) benign(0.092) TCGA-FS-A1YY-06 20 10603436 10603436 C T SLX4IP Silent p.S212S 0.21 TCGA-FS-A1YY-06 20 23350250 23350250 G A GZF1 Missense_Mutation p.G553S 0.32 deleterious(0.01) probably_damaging(0.957) TCGA-FS-A1YY-06 20 36022382 36022382 C T SRC Silent p.S145S 0.27 TCGA-FS-A1YY-06 20 44163078 44163078 G A WFDC6 3'UTR 0.32 TCGA-FS-A1YY-06 20 51872096 51872096 C T TSHZ2 Missense_Mutation p.S700F 0.33 deleterious(0) probably_damaging(0.998) TCGA-FS-A1YY-06 20 62700770 62700770 C T TCEA2 Missense_Mutation p.P129L 0.62 deleterious(0.03) benign(0.242) TCGA-FS-A1YY-06 20 62700772 62700772 C T TCEA2 Missense_Mutation p.P130S 0.58 tolerated(0.08) benign(0.164) TCGA-FS-A1YY-06 22 20759962 20759962 C T ZNF74 Silent p.A213A 0.42 TCGA-FS-A1YY-06 22 24125674 24125674 C T AP000349.1 Missense_Mutation p.G158R 0.31 unknown(0) TCGA-FS-A1YY-06 2 101019034 101019034 C G CHST10 Missense_Mutation p.E62Q 0.61 tolerated(0.44) benign(0.005) TCGA-FS-A1YY-06 2 166747104 166747104 G A TTC21B Missense_Mutation p.R1050W 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 2 179584144 179584144 C T TTN Silent p.L7991L 0.56 TCGA-FS-A1YY-06 2 21232960 21232960 G A APOB Silent p.I2260I 0.60 TCGA-FS-A1YY-06 2 233244902 233244902 C T ALPP Silent p.L222L 0.48 TCGA-FS-A1YY-06 2 29240795 29240795 G A FAM179A Missense_Mutation p.E445K 0.68 tolerated(0.11) possibly_damaging(0.905) TCGA-FS-A1YY-06 2 37111155 37111155 G A STRN Missense_Mutation p.S369L 0.63 tolerated(0.26) benign(0.009) TCGA-FS-A1YY-06 2 38224657 38224657 G A RMDN2 Silent p.K526K 0.61 TCGA-FS-A1YY-06 2 48602501 48602501 C T FOXN2 Silent p.L405L 0.65 TCGA-FS-A1YY-06 2 79350320 79350323 TGTC - REG1A Frame_Shift_Del p.V161Afs*14 0.60 TCGA-FS-A1YY-06 2 96789678 96789678 C T ASTL Missense_Mutation p.G403R 0.47 tolerated_low_confidence(0.58) benign(0.002) TCGA-FS-A1YY-06 3 121305437 121305437 G A ARGFX Missense_Mutation p.G313E 0.31 tolerated_low_confidence(0.08) possibly_damaging(0.703) TCGA-FS-A1YY-06 3 126224812 126224812 G A UROC1 Silent p.P215P 0.43 TCGA-FS-A1YY-06 3 12641889 12641889 G T RAF1 Nonsense_Mutation p.S287* 0.31 TCGA-FS-A1YY-06 3 131306334 131306334 C T CPNE4 Silent p.G258G 0.27 TCGA-FS-A1YY-06 3 150661686 150661686 T A CLRN1 Intron 0.32 TCGA-FS-A1YY-06 3 195491985 195491985 C T MUC4 Missense_Mutation p.G4603S 0.52 benign(0.089) TCGA-FS-A1YY-06 3 39151626 39151626 C T TTC21A Silent p.I88I 0.37 TCGA-FS-A1YY-06 3 39226215 39226215 G A XIRP1 Silent p.F1574F 0.39 TCGA-FS-A1YY-06 3 39452322 39452322 C A RPSA Missense_Mutation p.N110K 0.31 deleterious(0) probably_damaging(0.964) TCGA-FS-A1YY-06 3 41266137 41266137 C G CTNNB1 Missense_Mutation p.S45C 0.36 deleterious(0) probably_damaging(0.968) TCGA-FS-A1YY-06 3 47454624 47454626 TGA - PTPN23 In_Frame_Del p.D1622del 0.25 TCGA-FS-A1YY-06 3 48677265 48677265 G A CELSR3 Silent p.A3251A 0.29 TCGA-FS-A1YY-06 3 52257979 52257979 G A TLR9 Missense_Mutation p.T272I 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 3 52395225 52395225 T C DNAH1 Silent p.G1577G 0.28 TCGA-FS-A1YY-06 3 52568686 52568686 C T NT5DC2 5'Flank 0.35 TCGA-FS-A1YY-06 3 56173549 56173549 G A ERC2 Silent p.I487I 0.32 TCGA-FS-A1YY-06 3 7620138 7620138 C T GRM7 Silent p.V515V 0.43 TCGA-FS-A1YY-06 3 96963193 96963193 C A EPHA6 Intron 0.31 TCGA-FS-A1YY-06 4 100261813 100261813 C T ADH1C Missense_Mutation p.V295I 0.33 benign(0.006) TCGA-FS-A1YY-06 4 100478546 100478546 G A TRMT10A Nonsense_Mutation p.Q126* 0.29 TCGA-FS-A1YY-06 4 123249418 123249418 G C KIAA1109 Missense_Mutation p.D3719H 0.39 probably_damaging(0.94) TCGA-FS-A1YY-06 4 128694625 128694625 C T SLC25A31 Missense_Mutation p.R282C 0.47 deleterious(0.01) probably_damaging(0.963) TCGA-FS-A1YY-06 4 140651714 140651714 G A MAML3 Silent p.F729F 0.29 TCGA-FS-A1YY-06 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.33 deleterious(0.03) probably_damaging(1) TCGA-FS-A1YY-06 4 155509998 155509998 G A FGA Missense_Mutation p.S104L 0.28 tolerated(0.17) possibly_damaging(0.546) TCGA-FS-A1YY-06 4 162307342 162307342 G A FSTL5 Missense_Mutation p.P701S 0.27 deleterious(0.03) benign(0.419) TCGA-FS-A1YY-06 4 3945031 3945031 A G FAM86EP RNA 0.22 TCGA-FS-A1YY-06 4 54294256 54294256 C T FIP1L1 Silent p.F360F 0.26 TCGA-FS-A1YY-06 4 6324978 6324978 C T PPP2R2C 3'UTR 0.45 TCGA-FS-A1YY-06 4 68956357 68956357 C T TMPRSS11F Missense_Mutation p.D56N 0.36 tolerated(0.13) benign(0.047) TCGA-FS-A1YY-06 4 69681966 69681966 C T UGT2B10 Missense_Mutation p.P77S 0.35 tolerated(0.08) benign(0.367) TCGA-FS-A1YY-06 4 75174855 75174855 C T EPGN Missense_Mutation p.P30L 0.36 tolerated(0.28) benign(0.011) TCGA-FS-A1YY-06 4 80328580 80328580 C T GK2 Missense_Mutation p.D259N 0.32 tolerated(0.1) probably_damaging(1) TCGA-FS-A1YY-06 4 81967316 81967316 C T BMP3 Silent p.A247A 0.35 TCGA-FS-A1YY-06 4 845554 845554 G A GAK Silent p.V1164V 0.38 TCGA-FS-A1YY-06 5 101709193 101709193 G A SLCO6A1 Missense_Mutation p.L675F 0.31 tolerated(0.5) benign(0.006) TCGA-FS-A1YY-06 5 110409186 110409186 T C TSLP Intron 0.38 TCGA-FS-A1YY-06 5 112174732 112174732 C T APC Silent p.Y1147Y 0.33 TCGA-FS-A1YY-06 5 114916853 114916853 G A TMED7-TICAM2 Missense_Mutation p.S203F 0.31 deleterious_low_confidence(0) benign(0.347) TCGA-FS-A1YY-06 5 11565169 11565169 C T CTNND2 Splice_Site p.X59_splice 0.31 TCGA-FS-A1YY-06 5 13809263 13809263 C T DNAH5 Missense_Mutation p.E2548K 0.37 benign(0.292) TCGA-FS-A1YY-06 5 138208984 138208984 C T LRRTM2 Silent p.R422R 0.35 TCGA-FS-A1YY-06 5 13922271 13922271 G A DNAH5 Missense_Mutation p.S202F 0.26 possibly_damaging(0.608) TCGA-FS-A1YY-06 5 140724205 140724205 G A PCDHGA3 Missense_Mutation p.R202H 0.36 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-FS-A1YY-06 5 140866358 140866358 C T PCDHGC4 Missense_Mutation p.R540W 0.37 deleterious(0.04) benign(0.159) TCGA-FS-A1YY-06 5 23526840 23526840 G A PRDM9 Missense_Mutation p.G548E 0.35 tolerated(0.06) probably_damaging(1) TCGA-FS-A1YY-06 5 38482701 38482701 C T LIFR Missense_Mutation p.S887N 0.24 tolerated(1) benign(0.014) TCGA-FS-A1YY-06 5 41000789 41000789 C A MROH2B Missense_Mutation p.K1447N 0.39 tolerated(0.12) benign(0.026) TCGA-FS-A1YY-06 5 41160458 41160458 G A C6 Silent p.I490I 0.27 TCGA-FS-A1YY-06 5 5240009 5240009 G A ADAMTS16 Missense_Mutation p.G832R 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 5 56178115 56178115 C T MAP3K1 Missense_Mutation p.H1030Y 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-FS-A1YY-06 5 95757600 95757600 G A PCSK1 Missense_Mutation p.P202S 0.23 tolerated(0.84) benign(0.01) TCGA-FS-A1YY-06 6 117250035 117250035 C T RFX6 Missense_Mutation p.H838Y 0.35 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FS-A1YY-06 6 125139609 125139609 G T NKAIN2 Missense_Mutation p.M204I 0.25 tolerated(0.08) probably_damaging(0.954) TCGA-FS-A1YY-06 6 130762876 130762876 G A TMEM200A Missense_Mutation p.E437K 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1YY-06 6 144086817 144086817 G A PHACTR2 Missense_Mutation p.A372T 0.39 tolerated_low_confidence(0.28) benign(0.011) TCGA-FS-A1YY-06 6 25727171 25727171 C T HIST1H2BA Missense_Mutation p.S12F 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A1YY-06 6 29054046 29054046 G A OR2B3 3'UTR 0.21 TCGA-FS-A1YY-06 6 30552334 30552334 C T ABCF1 Missense_Mutation p.S461F 0.35 deleterious(0) probably_damaging(0.998) TCGA-FS-A1YY-06 6 30627339 30627339 G A DHX16 Silent p.I639I 0.31 TCGA-FS-A1YY-06 6 31678186 31678186 C T LY6G6F Missense_Mutation p.A287V 0.31 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-FS-A1YY-06 6 32038156 32038156 G A TNXB Missense_Mutation p.R1676C 0.39 possibly_damaging(0.854) TCGA-FS-A1YY-06 6 41908753 41908753 A G CCND3 Intron 0.25 TCGA-FS-A1YY-06 6 44900436 44900436 G A SUPT3H Missense_Mutation p.A300V 0.29 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A1YY-06 6 49703299 49703299 C T CRISP3 Nonsense_Mutation p.W88* 0.39 TCGA-FS-A1YY-06 6 55216215 55216215 C T GFRAL Missense_Mutation p.P179S 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1YY-06 6 88757815 88757815 G A SPACA1 Silent p.P64P 0.45 TCGA-FS-A1YY-06 6 88854925 88854925 C T CNR1 Silent p.V23V 0.28 TCGA-FS-A1YY-06 6 96651433 96651433 G A FUT9 Missense_Mutation p.M134I 0.31 tolerated(0.17) benign(0.261) TCGA-FS-A1YY-06 7 115580888 115580888 G A TFEC Missense_Mutation p.P254L 0.37 tolerated(0.71) benign(0.008) TCGA-FS-A1YY-06 7 131864512 131864512 T G PLXNA4 Missense_Mutation p.T1270P 0.28 deleterious(0) probably_damaging(0.991) TCGA-FS-A1YY-06 7 134136347 134136347 G A AKR1B1 Silent p.I75I 0.30 TCGA-FS-A1YY-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-FS-A1YY-06 7 141618923 141618923 G A OR9A4 Missense_Mutation p.G83E 0.25 tolerated(0.07) benign(0.102) TCGA-FS-A1YY-06 7 154876005 154876005 C T HTR5A Silent p.F294F 0.34 TCGA-FS-A1YY-06 7 21947944 21947944 G A CDCA7L Missense_Mutation p.S162F 0.29 tolerated(0.69) benign(0.003) TCGA-FS-A1YY-06 7 3658864 3658864 G T SDK1 Nonsense_Mutation p.E151* 0.24 TCGA-FS-A1YY-06 7 36698799 36698799 G A AOAH Missense_Mutation p.P121L 0.36 deleterious(0.04) benign(0.078) TCGA-FS-A1YY-06 7 37916566 37916566 G A NME8 Silent p.K317K 0.22 TCGA-FS-A1YY-06 7 38813801 38813801 G A VPS41 Missense_Mutation p.P309L 0.39 tolerated(0.38) benign(0.123) TCGA-FS-A1YY-06 7 4091391 4091391 C T SDK1 Missense_Mutation p.S947F 0.31 deleterious(0) benign(0.41) TCGA-FS-A1YY-06 7 75178284 75178284 C T HIP1 Missense_Mutation p.G771R 0.31 deleterious(0.02) possibly_damaging(0.737) TCGA-FS-A1YY-06 7 96650112 96650112 G A DLX5 Missense_Mutation p.S269F 0.28 tolerated(0.12) benign(0.352) TCGA-FS-A1YY-06 8 106814337 106814337 C T ZFPM2 Missense_Mutation p.P676L 0.51 tolerated(0.09) benign(0.046) TCGA-FS-A1YY-06 8 117866524 117866524 G A RAD21 Missense_Mutation p.S374F 0.55 deleterious(0.01) possibly_damaging(0.898) TCGA-FS-A1YY-06 8 142367672 142367672 C T GPR20 Missense_Mutation p.G118S 0.34 tolerated(0.45) benign(0.42) TCGA-FS-A1YY-06 8 143695445 143695445 C T ARC Missense_Mutation p.G63E 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1YY-06 8 69358599 69358599 G A C8orf34 Missense_Mutation p.D171N 0.59 deleterious(0.01) probably_damaging(0.913) TCGA-FS-A1YY-06 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.49 deleterious(0) possibly_damaging(0.547) TCGA-FS-A1YY-06 8 94935737 94935737 C T PDP1 Missense_Mutation p.R509C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A1YY-06 9 101817395 101817395 G A COL15A1 Missense_Mutation p.D1015N 0.61 tolerated(0.2) probably_damaging(0.977) TCGA-FS-A1YY-06 9 133756025 133756025 C T ABL1 Missense_Mutation p.P570L 0.41 tolerated(0.24) benign(0.001) TCGA-FS-A1YY-06 9 140638524 140638524 G A EHMT1 Silent p.E384E 0.58 TCGA-FS-A1YY-06 9 14812992 14812992 C T FREM1 Missense_Mutation p.G904E 0.60 deleterious(0) probably_damaging(0.997) TCGA-FS-A1YY-06 9 8486162 8486162 G A PTPRD Silent p.I885I 0.50 TCGA-FS-A1YY-06 X 105189981 105189981 G A NRK Missense_Mutation p.E1394K 0.41 deleterious(0.04) probably_damaging(0.987) TCGA-FS-A1YY-06 X 105280605 105280605 C T SERPINA7 Missense_Mutation p.D149N 0.33 tolerated(0.35) benign(0.033) TCGA-FS-A1YY-06 X 107925060 107925060 C T COL4A5 Silent p.I1386I 0.39 TCGA-FS-A1YY-06 X 119059134 119059134 G A NKAP 3'UTR 0.42 TCGA-FS-A1YY-06 X 134421644 134421644 G A ZNF75D Missense_Mutation p.P320S 0.33 tolerated(0.09) benign(0.001) TCGA-FS-A1YY-06 X 134856796 134856796 G A CT45A1 3'UTR 0.04 TCGA-FS-A1YY-06 X 150349595 150349595 G T GPR50 Nonsense_Mutation p.E514* 0.21 TCGA-FS-A1YY-06 X 151818304 151818304 G A GABRQ Missense_Mutation p.G237E 0.36 tolerated(0.14) probably_damaging(0.976) TCGA-FS-A1YY-06 X 153296630 153296630 G A MECP2 Missense_Mutation p.P229S 0.36 tolerated(0.16) benign(0.09) TCGA-FS-A1YY-06 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.31 tolerated(0.09) possibly_damaging(0.864) TCGA-FS-A1YY-06 X 20034251 20034251 T C MAP7D2 Silent p.Q535Q 0.38 TCGA-FS-A1YY-06 X 32429959 32429959 T A DMD Missense_Mutation p.L1381F 0.38 possibly_damaging(0.636) TCGA-FS-A1YY-06 X 51639952 51639952 C T MAGED1 Missense_Mutation p.P457S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1YY-06 X 65476088 65476088 G A HEPH Missense_Mutation p.E992K 0.40 deleterious(0.02) possibly_damaging(0.78) TCGA-FS-A1YY-06 X 70468049 70468049 G A ZMYM3 Silent p.L646L 0.21 TCGA-FS-A1YY-06 X 70832957 70832957 A T ACRC 3'UTR 0.45 TCGA-FS-A1YY-06 X 73046260 73046260 G A XIST RNA 0.32 TCGA-FS-A1YY-06 X 85119751 85119751 G A CHM Missense_Mutation p.L616F 0.33 tolerated(0.6) benign(0.001) TCGA-FS-A1Z0-06 10 129141980 129141980 C T DOCK1 Missense_Mutation p.S1044L 0.47 deleterious(0.03) benign(0.032) TCGA-FS-A1Z0-06 10 22678203 22678203 C T SPAG6 Missense_Mutation p.H323Y 0.40 tolerated(0.21) possibly_damaging(0.703) TCGA-FS-A1Z0-06 10 25887955 25887955 C T GPR158 Missense_Mutation p.L1134F 0.21 tolerated(0.53) benign(0.022) TCGA-FS-A1Z0-06 10 27052880 27052880 G A ABI1 Missense_Mutation p.S277F 0.28 tolerated(0.35) benign(0.004) TCGA-FS-A1Z0-06 10 33140760 33140760 C T C10ORF68 Silent p.P550P 0.40 TCGA-FS-A1Z0-06 10 37490176 37490176 C A ANKRD30A Missense_Mutation p.T875N 0.19 tolerated(0.51) benign(0.044) TCGA-FS-A1Z0-06 10 48383871 48383871 C T RBP3 Missense_Mutation p.E1121K 0.32 deleterious(0.03) possibly_damaging(0.621) TCGA-FS-A1Z0-06 10 49457098 49457098 C T FRMPD2 Missense_Mutation p.G92E 0.44 tolerated(0.16) benign(0.015) TCGA-FS-A1Z0-06 10 50121505 50121505 C T LRRC18 Silent p.P232P 0.32 TCGA-FS-A1Z0-06 10 50315832 50315832 C T VSTM4 Silent p.G88G 0.28 TCGA-FS-A1Z0-06 10 50531639 50531639 G A C10orf71 Missense_Mutation p.G350E 0.28 tolerated(0.52) benign(0.316) TCGA-FS-A1Z0-06 10 50531640 50531640 G A C10orf71 Silent p.G350G 0.28 TCGA-FS-A1Z0-06 10 70446152 70446152 G A TET1 Missense_Mutation p.V1698I 0.37 tolerated(0.11) benign(0.04) TCGA-FS-A1Z0-06 10 76788641 76788641 G A KAT6B Silent p.E1353E 0.50 TCGA-FS-A1Z0-06 10 85981769 85981769 G A LRIT2 Silent p.S520S 0.24 TCGA-FS-A1Z0-06 10 87362307 87362307 C T GRID1 Missense_Mutation p.R918Q 0.29 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-FS-A1Z0-06 10 99019293 99019293 G A ARHGAP19 Missense_Mutation p.P236S 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 10 99196960 99196960 G A EXOSC1 Missense_Mutation p.H157Y 0.36 tolerated(1) benign(0.042) TCGA-FS-A1Z0-06 10 99410889 99410889 C T PI4K2A Silent p.P179P 0.24 TCGA-FS-A1Z0-06 11 100064354 100064354 G A CNTN5 Missense_Mutation p.D615N 0.41 tolerated(0.12) benign(0.013) TCGA-FS-A1Z0-06 11 100211269 100211269 C T CNTN5 Silent p.V935V 0.67 TCGA-FS-A1Z0-06 11 117710678 117710678 G A FXYD6 Intron 0.67 TCGA-FS-A1Z0-06 11 20104140 20104140 C T NAV2 Silent p.V1832V 0.43 TCGA-FS-A1Z0-06 11 22833419 22833419 G A GAS2 Missense_Mutation p.D267N 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 11 30516965 30516965 G A MPPED2 Silent p.F138F 0.31 TCGA-FS-A1Z0-06 11 4567275 4567275 C T OR52M1 Silent p.L285L 0.39 TCGA-FS-A1Z0-06 11 46839972 46839972 G A CKAP5 Missense_Mutation p.S47F 0.34 deleterious(0.01) possibly_damaging(0.904) TCGA-FS-A1Z0-06 11 4824842 4824842 G A OR52R1 Missense_Mutation p.P257S 0.33 deleterious(0.03) possibly_damaging(0.859) TCGA-FS-A1Z0-06 11 5080083 5080083 A T OR52E2 Missense_Mutation p.S259T 0.31 tolerated(0.06) probably_damaging(0.965) TCGA-FS-A1Z0-06 11 5344634 5344634 T G OR51B2 Missense_Mutation p.Q298H 0.35 deleterious(0.05) possibly_damaging(0.873) TCGA-FS-A1Z0-06 11 5475658 5475658 C A OR51I2 3'UTR 0.31 TCGA-FS-A1Z0-06 11 55606288 55606288 G A OR5D16 Missense_Mutation p.D21N 0.42 deleterious(0.02) benign(0.167) TCGA-FS-A1Z0-06 11 57314011 57314011 G A SMTNL1 Missense_Mutation p.S427N 0.40 tolerated(0.07) probably_damaging(0.951) TCGA-FS-A1Z0-06 11 59361193 59361193 C T OSBP Missense_Mutation p.S521N 0.31 deleterious(0.02) benign(0.058) TCGA-FS-A1Z0-06 11 61083814 61083814 G A DDB1 Silent p.F451F 0.41 TCGA-FS-A1Z0-06 11 64662526 64662526 G A ATG2A Silent p.L1912L 0.47 TCGA-FS-A1Z0-06 11 66030338 66030338 C T KLC2 Missense_Mutation p.P195S 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1Z0-06 11 73076882 73076882 C T ARHGEF17 Missense_Mutation p.P1962L 0.23 tolerated(0.15) possibly_damaging(0.781) TCGA-FS-A1Z0-06 11 73760455 73760455 G A C2CD3 Missense_Mutation p.S1763F 0.29 deleterious(0) probably_damaging(0.982) TCGA-FS-A1Z0-06 11 74168377 74168377 C T KCNE3 Missense_Mutation p.G78R 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 11 7982349 7982349 C T NLRP10 Silent p.K270K 0.31 TCGA-FS-A1Z0-06 11 86056760 86056760 C T C11orf73 3'UTR 0.29 TCGA-FS-A1Z0-06 11 89891347 89891347 G A NAALAD2 Silent p.V277V 0.32 TCGA-FS-A1Z0-06 12 106890623 106890623 G A POLR3B Missense_Mutation p.D971N 0.36 deleterious(0.04) benign(0.178) TCGA-FS-A1Z0-06 12 111956089 111956089 G A ATXN2 Missense_Mutation p.P537S 0.32 benign(0.045) TCGA-FS-A1Z0-06 12 117696239 117696239 C T NOS1 Missense_Mutation p.E832K 0.24 tolerated(0.14) probably_damaging(0.928) TCGA-FS-A1Z0-06 12 123098305 123098305 C T KNTC1 Silent p.S1958S 0.41 TCGA-FS-A1Z0-06 12 12629698 12629698 G A DUSP16 3'UTR 0.15 TCGA-FS-A1Z0-06 12 13061916 13061916 C T GPRC5A Missense_Mutation p.L245F 0.42 deleterious(0) probably_damaging(0.973) TCGA-FS-A1Z0-06 12 13761575 13761575 C T GRIN2B Missense_Mutation p.E658K 0.26 deleterious(0) possibly_damaging(0.735) TCGA-FS-A1Z0-06 12 1675965 1675965 C T FBXL14 Silent p.G402G 0.27 TCGA-FS-A1Z0-06 12 18234137 18234137 C T RERGL Silent p.R202R 0.38 TCGA-FS-A1Z0-06 12 41967386 41967386 G A PDZRN4 Missense_Mutation p.M935I 0.23 deleterious(0) benign(0.114) TCGA-FS-A1Z0-06 12 43846077 43846077 C T ADAMTS20 Missense_Mutation p.M693I 0.26 deleterious(0) benign(0.208) TCGA-FS-A1Z0-06 12 55420920 55420920 G A NEUROD4 Missense_Mutation p.G233R 0.45 tolerated(0.5) benign(0.424) TCGA-FS-A1Z0-06 12 56711414 56711414 G T PAN2 Missense_Mutation p.F1196L 0.26 deleterious_low_confidence(0) benign(0.002) TCGA-FS-A1Z0-06 12 6428212 6428212 C T PLEKHG6 Missense_Mutation p.L488F 0.35 tolerated(0.1) benign(0.025) TCGA-FS-A1Z0-06 12 70003788 70003788 G A LRRC10 Silent p.S277S 0.21 TCGA-FS-A1Z0-06 12 72335485 72335485 G A TPH2 Missense_Mutation p.G76E 0.26 tolerated(0.12) benign(0.014) TCGA-FS-A1Z0-06 12 7984358 7984358 G A SLC2A14 Silent p.I61I 0.38 TCGA-FS-A1Z0-06 12 86198973 86198973 C T RASSF9 Missense_Mutation p.R272Q 0.30 tolerated(1) benign(0.001) TCGA-FS-A1Z0-06 13 103518489 103518489 T C ERCC5 Intron 0.22 TCGA-FS-A1Z0-06 13 110827011 110827011 G A COL4A1 Missense_Mutation p.S1095F 0.27 probably_damaging(0.968) TCGA-FS-A1Z0-06 13 31338102 31338102 G A ALOX5AP Silent p.G115G 0.49 TCGA-FS-A1Z0-06 13 31531145 31531145 G A TEX26 Missense_Mutation p.D150N 0.45 deleterious(0.01) possibly_damaging(0.904) TCGA-FS-A1Z0-06 13 37524141 37524141 A T ALG5 Missense_Mutation p.F305I 0.25 tolerated(0.07) benign(0.002) TCGA-FS-A1Z0-06 13 38143461 38143461 C T POSTN Missense_Mutation p.E803K 0.49 tolerated_low_confidence(0.14) benign(0.297) TCGA-FS-A1Z0-06 13 48953779 48953779 T C RB1 Missense_Mutation p.L461P 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 13 99461655 99461655 G A DOCK9 Missense_Mutation p.S1773L 0.52 deleterious(0.01) benign(0.247) TCGA-FS-A1Z0-06 14 101532269 101532269 C T MIR410 RNA 0.32 TCGA-FS-A1Z0-06 14 102027999 102027999 G T DIO3 Missense_Mutation p.A56S 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1Z0-06 14 105459348 105459348 C T C14orf79 Missense_Mutation p.L255F 0.30 tolerated(0.1) probably_damaging(0.998) TCGA-FS-A1Z0-06 14 106110413 106110413 G A IGHG2 Missense_Mutation p.P108L 0.26 tolerated(0.18) benign(0.3) TCGA-FS-A1Z0-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.26 deleterious(0) possibly_damaging(0.659) TCGA-FS-A1Z0-06 14 21966544 21966544 G - TOX4 3'UTR 0.21 TCGA-FS-A1Z0-06 14 22293674 22293674 G A TRAV10 Translation_Start_Site p.M1? 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-FS-A1Z0-06 14 51372192 51372192 T A PYGL Missense_Mutation p.Y821F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 14 63417257 63417257 A G KCNH5 Silent p.S321S 0.38 TCGA-FS-A1Z0-06 14 68059435 68059435 G A PIGH Nonsense_Mutation p.Q131* 0.38 TCGA-FS-A1Z0-06 14 69262883 69262883 C T ZFP36L1 5'Flank 0.38 TCGA-FS-A1Z0-06 14 77706030 77706030 C T TMEM63C Silent p.A297A 0.33 TCGA-FS-A1Z0-06 14 93755013 93755013 A G BTBD7 Intron 0.31 TCGA-FS-A1Z0-06 14 94844793 94844793 T C SERPINA1 Missense_Mutation p.Q417R 0.22 tolerated(0.1) benign(0.004) TCGA-FS-A1Z0-06 14 94929550 94929550 C T SERPINA9 Silent p.S396S 0.31 TCGA-FS-A1Z0-06 15 25326479 25326479 A G SNORD116-15 RNA 0.25 TCGA-FS-A1Z0-06 15 25328765 25328765 C T SNORD116-17 RNA 0.10 TCGA-FS-A1Z0-06 15 42164597 42164597 G C SPTBN5 Missense_Mutation p.Q1690E 0.56 benign(0.384) TCGA-FS-A1Z0-06 15 42631883 42631883 C T GANC Silent p.F620F 0.21 TCGA-FS-A1Z0-06 15 43896314 43896314 C T STRC Missense_Mutation p.E1419K 0.25 tolerated(0.34) possibly_damaging(0.587) TCGA-FS-A1Z0-06 15 71125351 71125351 G A LARP6 Silent p.P172P 0.19 TCGA-FS-A1Z0-06 15 73593717 73593717 G A NEO1 Silent p.R1407R 0.30 TCGA-FS-A1Z0-06 15 89876715 89876715 C T POLG Missense_Mutation p.G91R 0.24 tolerated(0.3) benign(0.067) TCGA-FS-A1Z0-06 16 21008662 21008662 C T DNAH3 Missense_Mutation p.D2182N 0.45 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z0-06 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.64 TCGA-FS-A1Z0-06 16 28112887 28112887 G A XPO6 Silent p.V1056V 0.44 TCGA-FS-A1Z0-06 16 31382970 31382970 G A ITGAX Silent p.V675V 0.41 TCGA-FS-A1Z0-06 16 321436 321436 C T RGS11 Silent p.L237L 0.28 TCGA-FS-A1Z0-06 16 51174965 51174965 G A SALL1 Missense_Mutation p.P390S 0.23 deleterious(0.04) possibly_damaging(0.619) TCGA-FS-A1Z0-06 16 57416244 57416244 C T CX3CL1 Missense_Mutation p.S165L 0.53 tolerated(1) benign(0.008) TCGA-FS-A1Z0-06 16 74752945 74752945 G A FA2H Missense_Mutation p.P243S 0.46 tolerated(0.07) possibly_damaging(0.588) TCGA-FS-A1Z0-06 17 10297626 10297626 C T MYH8 Silent p.R1702R 0.32 TCGA-FS-A1Z0-06 17 11738075 11738075 G A DNAH9 Missense_Mutation p.A3123T 0.25 benign(0.052) TCGA-FS-A1Z0-06 17 33772737 33772737 C T SLFN13 Intron 0.25 TCGA-FS-A1Z0-06 17 39881157 39881157 C T HAP1 Silent p.R552R 0.43 TCGA-FS-A1Z0-06 17 39928022 39928022 C T JUP Missense_Mutation p.G29S 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-FS-A1Z0-06 17 4020305 4020305 G A ZZEF1 Silent p.L219L 0.28 TCGA-FS-A1Z0-06 17 4644070 4644070 A G ZMYND15 Missense_Mutation p.E76G 0.50 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-FS-A1Z0-06 17 55197694 55197694 C T AKAP1 3'UTR 0.33 TCGA-FS-A1Z0-06 17 61949829 61949829 C T CSH2 Intron 0.18 TCGA-FS-A1Z0-06 17 62121413 62121413 A T ERN1 Missense_Mutation p.F957I 0.24 deleterious(0) possibly_damaging(0.492) TCGA-FS-A1Z0-06 18 28722082 28722082 C T DSC1 Silent p.Q380Q 0.35 TCGA-FS-A1Z0-06 18 31251810 31251810 G A ASXL3 Missense_Mutation p.R232Q 0.26 probably_damaging(0.992) TCGA-FS-A1Z0-06 18 34802140 34802140 C T KIAA1328 Missense_Mutation p.P562S 0.38 tolerated(0.06) benign(0.037) TCGA-FS-A1Z0-06 18 53128261 53128261 G A TCF4 Missense_Mutation p.S200F 0.34 deleterious(0.01) benign(0.001) TCGA-FS-A1Z0-06 18 6978196 6978196 G A LAMA1 Silent p.A2063A 0.34 TCGA-FS-A1Z0-06 18 7080343 7080343 G A LAMA1 Missense_Mutation p.R59W 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A1Z0-06 18 8718623 8718623 C T SOGA2 Nonsense_Mutation p.R59* 0.32 TCGA-FS-A1Z0-06 19 10812143 10812143 G A QTRT1 Missense_Mutation p.G3R 0.25 deleterious(0.01) benign(0.073) TCGA-FS-A1Z0-06 19 12921165 12921165 T C RNASEH2A Missense_Mutation p.F195S 0.31 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z0-06 19 19135649 19135649 C G SUGP2 Missense_Mutation p.G503A 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1Z0-06 19 2877665 2877665 G A ZNF556 Missense_Mutation p.G237R 0.26 deleterious(0.04) probably_damaging(0.942) TCGA-FS-A1Z0-06 19 3434310 3434310 C T NFIC Silent p.L249L 0.27 TCGA-FS-A1Z0-06 19 34832982 34832982 C T KIAA0355 Missense_Mutation p.P715S 0.34 tolerated_low_confidence(0.22) benign(0.022) TCGA-FS-A1Z0-06 19 34832983 34832983 C A KIAA0355 Missense_Mutation p.P715Q 0.33 tolerated_low_confidence(0.75) benign(0.002) TCGA-FS-A1Z0-06 19 37854094 37854094 T C HKR1 Missense_Mutation p.V466A 0.33 deleterious(0.02) benign(0.062) TCGA-FS-A1Z0-06 19 38881013 38881013 G A SPRED3 Missense_Mutation p.G24E 0.24 deleterious(0) probably_damaging(0.986) TCGA-FS-A1Z0-06 19 39023333 39023333 G A RYR1 Missense_Mutation p.G3739E 0.26 benign(0.001) TCGA-FS-A1Z0-06 19 39911623 39911623 C T PLEKHG2 Silent p.G478G 0.33 TCGA-FS-A1Z0-06 19 42083709 42083709 G A CEACAM21 Silent p.E74E 0.20 TCGA-FS-A1Z0-06 19 42583941 42583941 C T ZNF574 Missense_Mutation p.P395S 0.46 tolerated(0.12) probably_damaging(0.96) TCGA-FS-A1Z0-06 19 42795145 42795145 C T CIC Missense_Mutation p.P742L 0.25 probably_damaging(0.981) TCGA-FS-A1Z0-06 19 44339683 44339683 C T ZNF283 Missense_Mutation p.S50L 0.32 tolerated(0.23) possibly_damaging(0.587) TCGA-FS-A1Z0-06 19 44586179 44586179 C T ZNF284 Silent p.S52S 0.21 TCGA-FS-A1Z0-06 19 44980569 44980569 T G ZNF180 3'UTR 0.29 TCGA-FS-A1Z0-06 19 48634356 48634356 C T LIG1 Missense_Mutation p.D600N 0.39 deleterious(0.01) possibly_damaging(0.656) TCGA-FS-A1Z0-06 19 48634357 48634357 C T LIG1 Silent p.P599P 0.39 TCGA-FS-A1Z0-06 19 49693571 49693571 C T TRPM4 Missense_Mutation p.T709I 0.38 deleterious(0.01) benign(0.064) TCGA-FS-A1Z0-06 19 53994186 53994186 C T ZNF813 Nonsense_Mutation p.Q234* 0.35 TCGA-FS-A1Z0-06 19 55143588 55143588 G T LILRB1 Silent p.V187V 0.31 TCGA-FS-A1Z0-06 19 55177365 55177365 G A LILRB4 Missense_Mutation p.G286E 0.31 tolerated(0.11) benign(0.084) TCGA-FS-A1Z0-06 19 7692252 7692252 G A XAB2 Silent p.F133F 0.42 TCGA-FS-A1Z0-06 19 8563934 8563934 G A PRAM1 Missense_Mutation p.P253L 0.36 tolerated(0.06) benign(0.426) TCGA-FS-A1Z0-06 19 9063573 9063573 G A MUC16 Missense_Mutation p.S7958L 0.33 unknown(0) TCGA-FS-A1Z0-06 19 9086595 9086595 A G MUC16 Silent p.A1740A 0.35 TCGA-FS-A1Z0-06 1 10186901 10186901 C T UBE4B Missense_Mutation p.S535F 0.48 tolerated(0.09) possibly_damaging(0.851) TCGA-FS-A1Z0-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.56 tolerated(0.06) benign(0.006) TCGA-FS-A1Z0-06 1 120336796 120336796 G A REG4 3'UTR 0.45 TCGA-FS-A1Z0-06 1 12364652 12364652 C T VPS13D Silent p.S2102S 0.56 TCGA-FS-A1Z0-06 1 152595489 152595489 T A LCE3A Missense_Mutation p.S31C 0.60 tolerated_low_confidence(0.25) unknown(0) TCGA-FS-A1Z0-06 1 157670348 157670348 G A FCRL3 5'UTR 0.60 TCGA-FS-A1Z0-06 1 158549393 158549393 T A OR10X1 Missense_Mutation p.E99D 0.73 deleterious(0.05) benign(0.021) TCGA-FS-A1Z0-06 1 160769865 160769865 C T LY9 Silent p.F149F 0.62 TCGA-FS-A1Z0-06 1 162567623 162567623 C T UAP1 Missense_Mutation p.S467F 0.64 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 1 16817192 16817192 A G CROCCP3 RNA 0.50 TCGA-FS-A1Z0-06 1 173799875 173799875 C T DARS2 Silent p.S124S 0.08 TCGA-FS-A1Z0-06 1 175355293 175355293 C T TNR Missense_Mutation p.R551Q 0.12 tolerated(0.22) probably_damaging(0.909) TCGA-FS-A1Z0-06 1 176863711 176863711 T G ASTN1 Missense_Mutation p.N976T 0.11 deleterious(0) possibly_damaging(0.469) TCGA-FS-A1Z0-06 1 17948366 17948366 G A ARHGEF10L Missense_Mutation p.R317Q 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1Z0-06 1 182616005 182616005 C T RGS8 Silent p.Q154Q 0.65 TCGA-FS-A1Z0-06 1 186280225 186280225 G A PRG4 Missense_Mutation p.E1187K 0.61 unknown(0) TCGA-FS-A1Z0-06 1 19546091 19546091 G A EMC1 Missense_Mutation p.A925V 0.55 tolerated(0.09) possibly_damaging(0.745) TCGA-FS-A1Z0-06 1 196971796 196971796 T C CFHR5 Splice_Site p.X444_splice 0.12 TCGA-FS-A1Z0-06 1 207307851 207307851 C T C4BPA Missense_Mutation p.S396L 0.66 tolerated(0.69) benign(0.197) TCGA-FS-A1Z0-06 1 207785085 207785085 C T CR1 Missense_Mutation p.S2120L 0.52 tolerated(0.66) possibly_damaging(0.805) TCGA-FS-A1Z0-06 1 210577939 210577939 C T HHAT Silent p.S201S 0.11 TCGA-FS-A1Z0-06 1 214551323 214551323 G A PTPN14 Silent p.T889T 0.13 TCGA-FS-A1Z0-06 1 23232557 23232557 G A EPHB2 Missense_Mutation p.E616K 0.54 deleterious(0) possibly_damaging(0.565) TCGA-FS-A1Z0-06 1 23420592 23420592 C T LUZP1 Missense_Mutation p.E55K 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 1 234452365 234452365 C T SLC35F3 Silent p.L282L 0.68 TCGA-FS-A1Z0-06 1 248616301 248616301 C T OR2T2 Missense_Mutation p.S68F 0.32 deleterious(0) possibly_damaging(0.759) TCGA-FS-A1Z0-06 1 248652006 248652006 C T OR2T5 Silent p.F39F 0.40 TCGA-FS-A1Z0-06 1 248802357 248802357 G A OR2T35 Missense_Mutation p.S68F 0.33 deleterious(0) possibly_damaging(0.657) TCGA-FS-A1Z0-06 1 2541179 2541179 C T MMEL1 Silent p.V128V 0.12 TCGA-FS-A1Z0-06 1 46751701 46751701 G A LRRC41 Silent p.S276S 0.14 TCGA-FS-A1Z0-06 1 55472797 55472797 C T BSND Missense_Mutation p.P134S 0.14 tolerated(0.18) benign(0.011) TCGA-FS-A1Z0-06 1 75039077 75039077 C T C1orf173 Missense_Mutation p.E773K 0.53 tolerated(0.06) benign(0.021) TCGA-FS-A1Z0-06 1 7798518 7798518 C T CAMTA1 Silent p.C1386C 0.58 TCGA-FS-A1Z0-06 1 82372860 82372860 C T LPHN2 Nonsense_Mutation p.Q78* 0.11 TCGA-FS-A1Z0-06 1 90483007 90483007 T G ZNF326 Missense_Mutation p.V353G 0.10 deleterious(0) possibly_damaging(0.726) TCGA-FS-A1Z0-06 20 19565664 19565664 G A SLC24A3 Missense_Mutation p.G158E 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 20 20037317 20037317 C T C20orf26 Missense_Mutation p.P7L 0.34 tolerated(0.23) possibly_damaging(0.681) TCGA-FS-A1Z0-06 20 207945 207945 C T DEFB129 Missense_Mutation p.P6S 0.38 deleterious(0.01) possibly_damaging(0.857) TCGA-FS-A1Z0-06 20 35219438 35219438 C T TGIF2 Silent p.P106P 0.30 TCGA-FS-A1Z0-06 20 35219439 35219439 C T TGIF2 Missense_Mutation p.R107C 0.30 deleterious(0.01) possibly_damaging(0.543) TCGA-FS-A1Z0-06 20 39794389 39794389 C T PLCG1 Silent p.I574I 0.40 TCGA-FS-A1Z0-06 20 47990233 47990233 G A KCNB1 Missense_Mutation p.P622S 0.31 tolerated_low_confidence(0.4) benign(0.122) TCGA-FS-A1Z0-06 20 62891515 62891515 C T PCMTD2 Missense_Mutation p.P66L 0.39 deleterious(0) probably_damaging(0.972) TCGA-FS-A1Z0-06 21 27840930 27840930 C T CYYR1 Missense_Mutation p.D119N 0.35 tolerated(0.15) benign(0.027) TCGA-FS-A1Z0-06 21 41710126 41710126 G A DSCAM Missense_Mutation p.S562L 0.28 tolerated(0.62) benign(0.029) TCGA-FS-A1Z0-06 21 43508509 43508509 C T UMODL1 Missense_Mutation p.P237S 0.25 deleterious(0.04) benign(0.395) TCGA-FS-A1Z0-06 22 26343678 26343678 G A MYO18B Missense_Mutation p.V1878M 0.25 deleterious(0) probably_damaging(0.952) TCGA-FS-A1Z0-06 22 39263083 39263083 G A CBX6 Missense_Mutation p.R124C 0.46 deleterious(0) probably_damaging(0.973) TCGA-FS-A1Z0-06 22 39263084 39263084 G A CBX6 Silent p.I123I 0.46 TCGA-FS-A1Z0-06 2 102957281 102957281 G A IL1RL1 Silent p.T201T 0.19 TCGA-FS-A1Z0-06 2 103431399 103431399 T C TMEM182 Missense_Mutation p.V221A 0.21 tolerated(0.1) benign(0.017) TCGA-FS-A1Z0-06 2 121742237 121742237 C T GLI2 Missense_Mutation p.P625L 0.30 tolerated(0.21) benign(0.001) TCGA-FS-A1Z0-06 2 127956997 127956997 C T CYP27C1 Silent p.E169E 0.25 TCGA-FS-A1Z0-06 2 136409326 136409326 C T R3HDM1 Silent p.S549S 0.38 TCGA-FS-A1Z0-06 2 137814398 137814398 C T THSD7B Missense_Mutation p.S183F 0.42 deleterious(0) probably_damaging(0.989) TCGA-FS-A1Z0-06 2 162738880 162738880 C T SLC4A10 Missense_Mutation p.L374F 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 2 166188001 166188001 T C SCN2A Silent p.L771L 0.38 TCGA-FS-A1Z0-06 2 175446110 175446110 G A WIPF1 Missense_Mutation p.L37F 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 2 175446111 175446111 G A WIPF1 Silent p.L36L 0.29 TCGA-FS-A1Z0-06 2 178417083 178417083 C T TTC30B Missense_Mutation p.E137K 0.43 deleterious(0.05) possibly_damaging(0.589) TCGA-FS-A1Z0-06 2 179571203 179571203 C T TTN Missense_Mutation p.D9800N 0.48 TCGA-FS-A1Z0-06 2 179598197 179598197 C T TTN Missense_Mutation p.G5275R 0.26 TCGA-FS-A1Z0-06 2 179622489 179622489 C T TTN Silent p.A3486A 0.22 TCGA-FS-A1Z0-06 2 208841904 208841904 G A PLEKHM3 Silent p.F339F 0.21 TCGA-FS-A1Z0-06 2 215914452 215914452 G A ABCA12 Silent p.F197F 0.50 TCGA-FS-A1Z0-06 2 219508403 219508403 G A ZNF142 Missense_Mutation p.P946S 0.25 tolerated(0.25) possibly_damaging(0.641) TCGA-FS-A1Z0-06 2 234676527 234676527 G A UGT1A10 Silent p.S340S 0.39 TCGA-FS-A1Z0-06 2 239344455 239344455 C T ASB1 Missense_Mutation p.R99W 0.12 deleterious(0.01) possibly_damaging(0.873) TCGA-FS-A1Z0-06 2 33749069 33749069 A G RASGRP3 Missense_Mutation p.T214A 0.44 deleterious(0.04) benign(0.159) TCGA-FS-A1Z0-06 2 42931360 42931360 C T MTA3 Missense_Mutation p.S351F 0.42 tolerated(0.21) benign(0.031) TCGA-FS-A1Z0-06 2 74751370 74751370 C T DQX1 Missense_Mutation p.V166M 0.45 deleterious(0) probably_damaging(0.961) TCGA-FS-A1Z0-06 2 88991194 88991194 G A RPIA 5'UTR 0.17 TCGA-FS-A1Z0-06 2 88991195 88991195 G A RPIA 5'UTR 0.18 TCGA-FS-A1Z0-06 3 108476073 108476073 G A RETNLB 5'UTR 0.18 TCGA-FS-A1Z0-06 3 121100155 121100155 C T STXBP5L Missense_Mutation p.S812F 0.35 deleterious(0) possibly_damaging(0.677) TCGA-FS-A1Z0-06 3 123452795 123452795 C T MYLK Missense_Mutation p.A350T 0.21 tolerated(0.67) possibly_damaging(0.636) TCGA-FS-A1Z0-06 3 128182017 128182017 G A DNAJB8 Silent p.R24R 0.35 TCGA-FS-A1Z0-06 3 130398288 130398288 G A PIK3R4 Silent p.T1316T 0.32 TCGA-FS-A1Z0-06 3 133099154 133099154 G A TMEM108 Missense_Mutation p.R200Q 0.34 tolerated_low_confidence(0.1) benign(0.016) TCGA-FS-A1Z0-06 3 13363732 13363732 C T NUP210 Missense_Mutation p.D1626N 0.34 deleterious(0.04) possibly_damaging(0.721) TCGA-FS-A1Z0-06 3 134077418 134077418 G A AMOTL2 Silent p.L750L 0.27 TCGA-FS-A1Z0-06 3 147131347 147131347 A T ZIC1 3'UTR 0.33 TCGA-FS-A1Z0-06 3 148563299 148563299 C T CPB1 Silent p.F289F 0.39 TCGA-FS-A1Z0-06 3 167510377 167510377 G A SERPINI1 Splice_Site p.X161_splice 0.41 TCGA-FS-A1Z0-06 3 183368779 183368779 T C KLHL24 Missense_Mutation p.L212P 0.29 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z0-06 3 193232645 193232645 G A ATP13A4 Missense_Mutation p.R26W 0.42 deleterious(0) probably_damaging(0.93) TCGA-FS-A1Z0-06 3 196674319 196674319 C A PIGZ Missense_Mutation p.E483D 0.08 tolerated(0.05) benign(0.02) TCGA-FS-A1Z0-06 3 30713883 30713883 G A TGFBR2 Missense_Mutation p.R428H 0.40 deleterious(0.01) benign(0.07) TCGA-FS-A1Z0-06 3 36779400 36779400 G A DCLK3 Missense_Mutation p.P251S 0.34 tolerated(0.23) benign(0.229) TCGA-FS-A1Z0-06 3 37565067 37565067 C T ITGA9 Missense_Mutation p.S431L 0.52 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z0-06 3 51418834 51418834 C T DOCK3 Silent p.H1979H 0.50 TCGA-FS-A1Z0-06 3 51937094 51937094 C T IQCF1 Silent p.Q5Q 0.37 TCGA-FS-A1Z0-06 3 56053050 56053050 A G ERC2 Silent p.L551L 0.26 TCGA-FS-A1Z0-06 3 56330067 56330067 C T ERC2 Missense_Mutation p.E352K 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1Z0-06 3 56469054 56469054 T G ERC2 5'UTR 0.23 TCGA-FS-A1Z0-06 3 58111339 58111339 C T FLNB Silent p.D1310D 0.36 TCGA-FS-A1Z0-06 3 63968664 63968664 C T ATXN7 Silent p.T354T 0.35 TCGA-FS-A1Z0-06 4 111470695 111470695 C T ENPEP Missense_Mutation p.S746F 0.55 deleterious(0.01) possibly_damaging(0.516) TCGA-FS-A1Z0-06 4 111474533 111474533 G A ENPEP Missense_Mutation p.R855Q 0.32 tolerated(0.31) benign(0.06) TCGA-FS-A1Z0-06 4 119145709 119145709 G C NDST3 Missense_Mutation p.V535L 0.16 tolerated(0.06) possibly_damaging(0.581) TCGA-FS-A1Z0-06 4 138450971 138450971 C A PCDH18 Missense_Mutation p.D758Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-FS-A1Z0-06 4 151199140 151199140 C T LRBA Missense_Mutation p.R2789Q 0.34 deleterious(0.02) probably_damaging(0.922) TCGA-FS-A1Z0-06 4 151749573 151749573 G A LRBA Missense_Mutation p.L1644F 0.16 deleterious(0) possibly_damaging(0.878) TCGA-FS-A1Z0-06 4 173961266 173961266 G A GALNTL6 3'UTR 0.35 TCGA-FS-A1Z0-06 4 175443155 175443155 A C HPGD Missense_Mutation p.F53V 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1Z0-06 4 183714789 183714789 G A TENM3 Missense_Mutation p.G2322R 0.41 deleterious(0) probably_damaging(0.979) TCGA-FS-A1Z0-06 4 3427272 3427272 C T RGS12 Missense_Mutation p.P1106S 0.47 tolerated(0.11) benign(0.09) TCGA-FS-A1Z0-06 4 3427273 3427273 C T RGS12 Missense_Mutation p.P1106L 0.48 deleterious(0.02) possibly_damaging(0.649) TCGA-FS-A1Z0-06 4 47899986 47899986 G A NFXL1 Missense_Mutation p.S401L 0.46 deleterious(0) benign(0.356) TCGA-FS-A1Z0-06 4 5990073 5990073 C T C4orf50 Splice_Site p.X475_splice 0.50 TCGA-FS-A1Z0-06 4 74315081 74315081 C T AFP Missense_Mutation p.P363L 0.25 tolerated(0.05) benign(0.015) TCGA-FS-A1Z0-06 4 7435464 7435464 G A PSAPL1 Silent p.I381I 0.17 TCGA-FS-A1Z0-06 4 76529007 76529007 T C CDKL2 Silent p.L263L 0.14 TCGA-FS-A1Z0-06 5 10254948 10254948 T C CCT5 Missense_Mutation p.V110A 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 5 139217314 139217314 C T PSD2 Silent p.S590S 0.48 TCGA-FS-A1Z0-06 5 140431932 140431932 C T PCDHB1 Nonsense_Mutation p.Q293* 0.38 TCGA-FS-A1Z0-06 5 140481796 140481796 C G PCDHB3 Nonsense_Mutation p.Y521* 0.37 TCGA-FS-A1Z0-06 5 140554261 140554261 C T PCDHB7 Silent p.F615F 0.40 TCGA-FS-A1Z0-06 5 148389867 148389867 G T SH3TC2 Missense_Mutation p.T1098N 0.52 tolerated(0.25) benign(0.003) TCGA-FS-A1Z0-06 5 153144124 153144124 G A GRIA1 Missense_Mutation p.D662N 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 5 169097555 169097555 C T DOCK2 Missense_Mutation p.P60S 0.33 deleterious(0) probably_damaging(0.942) TCGA-FS-A1Z0-06 5 176026654 176026654 G A GPRIN1 Missense_Mutation p.P61L 0.35 tolerated(0.27) benign(0.075) TCGA-FS-A1Z0-06 5 178555107 178555107 C T ADAMTS2 Missense_Mutation p.G824R 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-FS-A1Z0-06 5 31299714 31299714 G A CDH6 Missense_Mutation p.D263N 0.42 deleterious(0.03) benign(0.006) TCGA-FS-A1Z0-06 5 38963106 38963106 G A RICTOR Missense_Mutation p.H480Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z0-06 5 52369055 52369055 C T ITGA2 Missense_Mutation p.S846L 0.30 deleterious(0) possibly_damaging(0.86) TCGA-FS-A1Z0-06 5 96253210 96253210 G A ERAP2 Silent p.L928L 0.36 TCGA-FS-A1Z0-06 6 139113921 139113921 C G CCDC28A Missense_Mutation p.P269R 0.44 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-FS-A1Z0-06 6 155569309 155569309 G A TIAM2 Silent p.L1276L 0.53 TCGA-FS-A1Z0-06 6 161528978 161528978 G A MAP3K4 Missense_Mutation p.G1366R 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 6 29577156 29577156 C T GABBR1 Missense_Mutation p.G570E 0.17 deleterious(0.02) possibly_damaging(0.637) TCGA-FS-A1Z0-06 6 30862422 30862422 C T DDR1 Missense_Mutation p.S496F 0.25 tolerated(0.11) benign(0.21) TCGA-FS-A1Z0-06 6 31903828 31903828 C T C2 Silent p.A326A 0.19 TCGA-FS-A1Z0-06 6 38690646 38690646 G A DNAH8 5'Flank 0.73 TCGA-FS-A1Z0-06 6 46623672 46623672 C T SLC25A27 Missense_Mutation p.P67S 0.59 tolerated(0.16) benign(0.06) TCGA-FS-A1Z0-06 6 47501378 47501378 C T CD2AP Missense_Mutation p.P69L 0.55 deleterious(0.05) benign(0.131) TCGA-FS-A1Z0-06 6 47675989 47675989 G A GPR115 Silent p.G41G 0.11 TCGA-FS-A1Z0-06 6 56035800 56035800 C T COL21A1 Missense_Mutation p.G256E 0.22 deleterious(0) possibly_damaging(0.517) TCGA-FS-A1Z0-06 6 56499366 56499366 G A DST Missense_Mutation p.R593C 0.62 probably_damaging(0.999) TCGA-FS-A1Z0-06 6 73108683 73108683 G A RIMS1 Missense_Mutation p.E1583K 0.14 deleterious(0) probably_damaging(0.954) TCGA-FS-A1Z0-06 6 74150069 74150069 G A MB21D1 Missense_Mutation p.S326L 0.64 tolerated(1) benign(0.004) TCGA-FS-A1Z0-06 6 7580076 7580076 A T DSP Missense_Mutation p.K1218M 0.52 probably_damaging(0.935) TCGA-FS-A1Z0-06 6 96651110 96651110 C T FUT9 Missense_Mutation p.L27F 0.55 tolerated(0.71) benign(0.046) TCGA-FS-A1Z0-06 7 100160517 100160517 C T AGFG2 Silent p.A373A 0.40 TCGA-FS-A1Z0-06 7 113518814 113518814 C T PPP1R3A Missense_Mutation p.G778E 0.32 tolerated(0.05) benign(0.32) TCGA-FS-A1Z0-06 7 12683911 12683911 C T SCIN Missense_Mutation p.T577I 0.27 tolerated(0.16) benign(0.028) TCGA-FS-A1Z0-06 7 141752605 141752605 C T MGAM Missense_Mutation p.P994S 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1Z0-06 7 142583185 142583185 C T TRPV6 Missense_Mutation p.R26Q 0.46 tolerated(0.68) benign(0.001) TCGA-FS-A1Z0-06 7 150069908 150069908 G A REPIN1 Silent p.Q583Q 0.23 TCGA-FS-A1Z0-06 7 150416143 150416143 G A GIMAP1 Missense_Mutation p.G3E 0.43 deleterious(0.01) benign(0.377) TCGA-FS-A1Z0-06 7 150939873 150939873 C T SMARCD3 Silent p.R130R 0.32 TCGA-FS-A1Z0-06 7 150939874 150939874 C T SMARCD3 Missense_Mutation p.R130K 0.32 tolerated(0.28) benign(0.052) TCGA-FS-A1Z0-06 7 21721170 21721170 C T DNAH11 Nonsense_Mutation p.Q1784* 0.22 TCGA-FS-A1Z0-06 7 63709438 63709438 C T ZNF679 5'UTR 0.38 TCGA-FS-A1Z0-06 7 73456982 73456982 C T ELN Silent p.L91L 0.30 TCGA-FS-A1Z0-06 7 8125886 8125886 C T GLCCI1 Silent p.I454I 0.30 TCGA-FS-A1Z0-06 7 92734352 92734352 C T SAMD9 Silent p.T353T 0.32 TCGA-FS-A1Z0-06 8 10583576 10583576 G A SOX7 Missense_Mutation p.S332F 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-FS-A1Z0-06 8 121013833 121013833 G A DEPTOR Missense_Mutation p.R225Q 0.49 deleterious(0.02) probably_damaging(0.991) TCGA-FS-A1Z0-06 8 124346237 124346237 G A ATAD2 Missense_Mutation p.P1120L 0.19 deleterious(0) benign(0.406) TCGA-FS-A1Z0-06 8 133759319 133759319 G A TMEM71 Intron 0.34 TCGA-FS-A1Z0-06 8 133909963 133909963 C T TG Missense_Mutation p.S1024L 0.22 tolerated(0.5) benign(0.011) TCGA-FS-A1Z0-06 8 136594218 136594218 C T KHDRBS3 Missense_Mutation p.R237W 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1Z0-06 8 139809090 139809090 G A COL22A1 Missense_Mutation p.P523L 0.61 unknown(0) TCGA-FS-A1Z0-06 8 142199114 142199114 G A DENND3 Silent p.Q958Q 0.23 TCGA-FS-A1Z0-06 8 27364508 27364508 C T EPHX2 Silent p.I219I 0.45 TCGA-FS-A1Z0-06 8 30402095 30402095 C T RBPMS Missense_Mutation p.A161V 0.53 deleterious(0.03) benign(0.386) TCGA-FS-A1Z0-06 8 53085104 53085104 G A ST18 Missense_Mutation p.S106L 0.26 tolerated(0.31) benign(0.003) TCGA-FS-A1Z0-06 8 65509349 65509349 C T CYP7B1 Missense_Mutation p.M457I 0.17 tolerated(0.46) benign(0.007) TCGA-FS-A1Z0-06 8 73850232 73850232 A T KCNB2 Missense_Mutation p.E881V 0.51 deleterious_low_confidence(0.02) possibly_damaging(0.615) TCGA-FS-A1Z0-06 8 91013693 91013693 C A DECR1 5'UTR 0.32 TCGA-FS-A1Z0-06 8 99148715 99148715 C T POP1 Silent p.I339I 0.50 TCGA-FS-A1Z0-06 9 107331747 107331747 A - OR13C8 Frame_Shift_Del p.M101Cfs*13 0.23 TCGA-FS-A1Z0-06 9 107457355 107457355 A T OR13D1 Missense_Mutation p.K218I 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 9 116153860 116153860 C T ALAD Missense_Mutation p.E70K 0.35 tolerated(0.68) benign(0.011) TCGA-FS-A1Z0-06 9 116945341 116945341 C T COL27A1 Missense_Mutation p.P668S 0.44 unknown(0) TCGA-FS-A1Z0-06 9 128064945 128064945 C T GAPVD1 Missense_Mutation p.T290I 0.33 tolerated(0.54) probably_damaging(0.998) TCGA-FS-A1Z0-06 9 131198057 131198057 C T CERCAM Missense_Mutation p.P554L 0.50 tolerated(0.4) benign(0.001) TCGA-FS-A1Z0-06 9 133553953 133553953 G A PRDM12 Missense_Mutation p.G203E 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 9 134319589 134319589 C G PRRC2B Missense_Mutation p.R163G 0.30 deleterious(0.03) probably_damaging(1) TCGA-FS-A1Z0-06 9 135202598 135202598 C T SETX Missense_Mutation p.D1463N 0.30 tolerated(0.2) benign(0.003) TCGA-FS-A1Z0-06 9 135977952 135977952 G A RALGDS Silent p.N640N 0.38 TCGA-FS-A1Z0-06 9 137801707 137801707 C G FCN1 Missense_Mutation p.W306C 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 9 15471114 15471114 A C PSIP1 Intron 0.33 TCGA-FS-A1Z0-06 9 21201733 21201733 C T IFNA7 Silent p.R144R 0.33 TCGA-FS-A1Z0-06 9 35398948 35398948 G A UNC13B Silent p.G1248G 0.52 TCGA-FS-A1Z0-06 9 5164230 5164230 C T INSL6 Missense_Mutation p.E109K 0.29 tolerated(0.44) possibly_damaging(0.874) TCGA-FS-A1Z0-06 X 100292915 100292915 A T TRMT2B Silent p.I143I 0.44 TCGA-FS-A1Z0-06 X 101858400 101858400 G A ARMCX5 Missense_Mutation p.G444E 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1Z0-06 X 115568959 115568959 A G SLC6A14 Missense_Mutation p.K17R 0.30 tolerated(0.15) benign(0.002) TCGA-FS-A1Z0-06 X 123518112 123518112 G A TENM1 Silent p.G2223G 0.43 TCGA-FS-A1Z0-06 X 12939833 12939833 T A TLR8 Missense_Mutation p.S892T 0.32 tolerated(0.34) benign(0.065) TCGA-FS-A1Z0-06 X 142717691 142717691 G A SLITRK4 Nonsense_Mutation p.Q412* 0.31 TCGA-FS-A1Z0-06 X 144905766 144905766 C T SLITRK2 Missense_Mutation p.S608F 0.31 deleterious(0.05) benign(0.092) TCGA-FS-A1Z0-06 X 151123984 151123984 G A GABRE Silent p.F331F 0.20 TCGA-FS-A1Z0-06 X 152226735 152226735 G A PNMA3 Silent p.Q441Q 0.38 TCGA-FS-A1Z0-06 X 19373555 19373555 C T PDHA1 Missense_Mutation p.T269M 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z0-06 X 2408217 2408217 C T ZBED1 Missense_Mutation p.E182K 0.25 tolerated(0.6) benign(0.076) TCGA-FS-A1Z0-06 X 34961078 34961078 G A FAM47B Missense_Mutation p.D44N 0.32 tolerated(0.25) probably_damaging(0.998) TCGA-FS-A1Z0-06 X 41055614 41055614 T G USP9X Splice_Site p.X1362_splice 0.39 TCGA-FS-A1Z0-06 X 41057871 41057871 G A USP9X Missense_Mutation p.V1491I 0.30 tolerated(0.11) possibly_damaging(0.891) TCGA-FS-A1Z0-06 X 52893828 52893828 C T XAGE3 Missense_Mutation p.E97K 0.35 deleterious(0) possibly_damaging(0.721) TCGA-FS-A1Z0-06 X 54263451 54263451 T C WNK3 Silent p.P1516P 0.34 TCGA-FS-A1Z0-06 X 57515239 57515239 G A FAAH2 Silent p.L491L 0.31 TCGA-FS-A1Z0-06 X 71819679 71819679 G A PHKA1 Intron 0.22 TCGA-FS-A1Z0-06 X 73063804 73063804 G A XIST RNA 0.30 TCGA-FS-A1Z0-06 X 76937757 76937757 G A ATRX Silent p.D997D 0.25 TCGA-FS-A1Z0-06 X 80532638 80532638 T G SH3BGRL Silent p.P67P 0.30 TCGA-FS-A1Z0-06 X 8767100 8767100 T C FAM9A Missense_Mutation p.T43A 0.72 tolerated_low_confidence(0.71) possibly_damaging(0.801) TCGA-FS-A1Z3-06 10 104488272 104488272 C T SFXN2 Silent p.S139S 0.63 TCGA-FS-A1Z3-06 10 104679714 104679714 G A CNNM2 Missense_Mutation p.D493N 0.76 deleterious(0) benign(0.404) TCGA-FS-A1Z3-06 10 106982947 106982947 C T SORCS3 Silent p.V936V 0.73 TCGA-FS-A1Z3-06 10 107012637 107012637 G A SORCS3 Silent p.R1070R 0.81 TCGA-FS-A1Z3-06 10 115922811 115922811 G A C10orf118 Missense_Mutation p.H73Y 0.84 tolerated_low_confidence(1) benign(0.001) TCGA-FS-A1Z3-06 10 120925126 120925126 C T SFXN4 Missense_Mutation p.G12R 0.88 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-FS-A1Z3-06 10 124036365 124036365 A G BTBD16 Silent p.K26K 0.71 TCGA-FS-A1Z3-06 10 124045742 124045742 G A BTBD16 Missense_Mutation p.E122K 0.75 tolerated(0.15) possibly_damaging(0.702) TCGA-FS-A1Z3-06 10 124395581 124395581 G A DMBT1 Missense_Mutation p.R2079Q 0.76 deleterious(0.01) possibly_damaging(0.771) TCGA-FS-A1Z3-06 10 12856267 12856267 G A CAMK1D Missense_Mutation p.E239K 0.77 deleterious(0) probably_damaging(0.974) TCGA-FS-A1Z3-06 10 128974170 128974170 C G FAM196A Missense_Mutation p.A164P 0.68 tolerated(0.11) benign(0.06) TCGA-FS-A1Z3-06 10 13214476 13214476 C T MCM10 Silent p.S150S 0.54 TCGA-FS-A1Z3-06 10 135368917 135368917 C T SYCE1 Missense_Mutation p.G286R 0.70 tolerated(0.12) benign(0.333) TCGA-FS-A1Z3-06 10 15639249 15639249 A G ITGA8 Missense_Mutation p.M723T 0.68 tolerated(0.15) benign(0.012) TCGA-FS-A1Z3-06 10 25861613 25861613 G A GPR158 Missense_Mutation p.R517Q 0.80 deleterious(0) probably_damaging(0.994) TCGA-FS-A1Z3-06 10 27536947 27536947 C T RP11-85G18.6 Intron 0.65 TCGA-FS-A1Z3-06 10 28273954 28273954 A T ARMC4 Missense_Mutation p.I190N 0.62 deleterious(0) possibly_damaging(0.863) TCGA-FS-A1Z3-06 10 28343131 28343131 C T MPP7 Missense_Mutation p.E532K 0.86 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1Z3-06 10 29710383 29710383 C T PTCHD3P1 RNA 0.62 TCGA-FS-A1Z3-06 10 43292897 43292897 C T BMS1 Missense_Mutation p.S672F 0.73 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1Z3-06 10 46963859 46963859 C A SYT15 Silent p.V368V 0.34 TCGA-FS-A1Z3-06 10 6066301 6066301 C T IL2RA Silent p.T91T 0.68 TCGA-FS-A1Z3-06 10 67829092 67829092 G A CTNNA3 Silent p.I711I 0.65 TCGA-FS-A1Z3-06 10 75671786 75671786 G A C10orf55 Missense_Mutation p.S38L 0.85 tolerated_low_confidence(0.31) possibly_damaging(0.519) TCGA-FS-A1Z3-06 10 79614108 79614108 G A DLG5 Missense_Mutation p.P186L 0.72 tolerated(0.16) benign(0.006) TCGA-FS-A1Z3-06 10 97096931 97096931 G A SORBS1 Missense_Mutation p.P996S 0.71 tolerated_low_confidence(0.62) possibly_damaging(0.578) TCGA-FS-A1Z3-06 10 97969651 97969651 C T BLNK Missense_Mutation p.G230E 0.75 tolerated(0.31) possibly_damaging(0.764) TCGA-FS-A1Z3-06 10 98092189 98092189 C T DNTT Missense_Mutation p.H399Y 0.81 deleterious(0.02) probably_damaging(0.989) TCGA-FS-A1Z3-06 11 100912728 100912728 G A PGR Missense_Mutation p.S865L 0.27 deleterious(0.04) benign(0.182) TCGA-FS-A1Z3-06 11 101375292 101375292 G A TRPC6 Silent p.A136A 0.58 TCGA-FS-A1Z3-06 11 102564738 102564738 G A MMP27 Silent p.I364I 0.50 TCGA-FS-A1Z3-06 11 102661252 102661252 C T MMP1 Missense_Mutation p.G434E 0.50 deleterious(0.03) possibly_damaging(0.491) TCGA-FS-A1Z3-06 11 102706732 102706732 C T MMP3 3'UTR 0.54 TCGA-FS-A1Z3-06 11 110477360 110477360 C T ARHGAP20 Missense_Mutation p.E297K 0.74 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 11 110485297 110485297 C T ARHGAP20 Silent p.G206G 0.74 TCGA-FS-A1Z3-06 11 117280472 117280472 C T CEP164 Missense_Mutation p.S1296F 0.74 deleterious(0) possibly_damaging(0.771) TCGA-FS-A1Z3-06 11 117376437 117376437 C T DSCAML1 Silent p.L658L 0.71 TCGA-FS-A1Z3-06 11 118375435 118375435 C T KMT2A Missense_Mutation p.T2943I 0.77 probably_damaging(0.959) TCGA-FS-A1Z3-06 11 120008109 120008109 G A TRIM29 Missense_Mutation p.H211Y 0.79 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 11 121403206 121403206 G A SORL1 Missense_Mutation p.D544N 0.50 deleterious(0) probably_damaging(0.99) TCGA-FS-A1Z3-06 11 123900541 123900541 T A OR10G8 Missense_Mutation p.F71Y 0.75 tolerated(0.17) benign(0.021) TCGA-FS-A1Z3-06 11 124179772 124179772 C T OR8D1 Silent p.V297V 0.79 TCGA-FS-A1Z3-06 11 124180115 124180115 G A OR8D1 Missense_Mutation p.P183L 0.75 deleterious(0) possibly_damaging(0.872) TCGA-FS-A1Z3-06 11 124252337 124252337 C T OR8B2 Silent p.R301R 0.88 TCGA-FS-A1Z3-06 11 124294385 124294385 G A OR8B4 Missense_Mutation p.P128L 0.81 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 11 124789623 124789623 A G HEPACAM 3'UTR 0.66 TCGA-FS-A1Z3-06 11 126081545 126081545 G A FAM118B 5'UTR 0.59 TCGA-FS-A1Z3-06 11 13427337 13427337 A G BTBD10 Missense_Mutation p.M292T 0.39 deleterious(0.05) benign(0.199) TCGA-FS-A1Z3-06 11 17139104 17139104 C T PIK3C2A Silent p.T1050T 0.27 TCGA-FS-A1Z3-06 11 18955962 18955962 C T MRGPRX1 Missense_Mutation p.V124I 0.28 tolerated(0.17) benign(0.16) TCGA-FS-A1Z3-06 11 20077463 20077463 C T NAV2 Silent p.T1620T 0.41 TCGA-FS-A1Z3-06 11 2191038 2191038 C T TH Missense_Mutation p.A83T 0.41 tolerated(0.15) probably_damaging(0.971) TCGA-FS-A1Z3-06 11 30435775 30435775 C T MPPED2 Missense_Mutation p.G256S 0.46 tolerated(0.09) possibly_damaging(0.784) TCGA-FS-A1Z3-06 11 36614213 36614213 C T RAG2 Missense_Mutation p.M502I 0.45 tolerated(0.11) benign(0.002) TCGA-FS-A1Z3-06 11 40137107 40137107 G A LRRC4C Nonsense_Mutation p.Q246* 0.46 TCGA-FS-A1Z3-06 11 4471283 4471283 G T OR52K2 Missense_Mutation p.K238N 0.42 deleterious(0) possibly_damaging(0.46) TCGA-FS-A1Z3-06 11 46406877 46406877 G A CHRM4 Missense_Mutation p.L411F 0.29 deleterious(0.01) benign(0.02) TCGA-FS-A1Z3-06 11 47612180 47612180 G A C1QTNF4 Silent p.F61F 0.47 TCGA-FS-A1Z3-06 11 48238555 48238555 C T OR4B1 Missense_Mutation p.S65F 0.39 deleterious(0) probably_damaging(0.966) TCGA-FS-A1Z3-06 11 4825176 4825176 G A OR52R1 Silent p.I145I 0.36 TCGA-FS-A1Z3-06 11 48347200 48347200 C T OR4C3 Silent p.F236F 0.36 TCGA-FS-A1Z3-06 11 4843021 4843021 C T OR51F2 Missense_Mutation p.R136C 0.48 deleterious(0.02) possibly_damaging(0.855) TCGA-FS-A1Z3-06 11 4869964 4869964 G A OR51S1 Nonsense_Mutation p.R159* 0.47 TCGA-FS-A1Z3-06 11 4929031 4929031 G A OR51A7 Missense_Mutation p.M144I 0.37 tolerated(1) benign(0.001) TCGA-FS-A1Z3-06 11 4936570 4936570 G A OR51G2 Silent p.F108F 0.43 TCGA-FS-A1Z3-06 11 5013338 5013338 G A MMP26 Missense_Mutation p.R247K 0.51 tolerated(1) benign(0.287) TCGA-FS-A1Z3-06 11 5142675 5142675 C T OR52A4 RNA 0.38 TCGA-FS-A1Z3-06 11 5142676 5142676 C T OR52A4 RNA 0.38 TCGA-FS-A1Z3-06 11 5247894 5247894 C T HBB Silent p.L76L 0.52 TCGA-FS-A1Z3-06 11 5510223 5510223 C T OR52D1 Missense_Mutation p.S96F 0.37 deleterious(0.02) possibly_damaging(0.83) TCGA-FS-A1Z3-06 11 55135613 55135613 C T OR4A15 Missense_Mutation p.S85F 0.47 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-FS-A1Z3-06 11 552635 552635 G A LRRC56 Silent p.R416R 0.52 TCGA-FS-A1Z3-06 11 5529600 5529600 G A UBQLN3 Missense_Mutation p.P397S 0.43 tolerated(0.16) benign(0.071) TCGA-FS-A1Z3-06 11 55340378 55340378 C T OR4C16 Missense_Mutation p.L259F 0.33 deleterious(0) benign(0.042) TCGA-FS-A1Z3-06 11 5536481 5536481 C A UBQLNL Missense_Mutation p.K397N 0.47 tolerated(0.1) benign(0.023) TCGA-FS-A1Z3-06 11 55433091 55433091 G A OR4C6 Missense_Mutation p.G150E 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-FS-A1Z3-06 11 55587654 55587654 C T OR5D18 Silent p.S183S 0.39 TCGA-FS-A1Z3-06 11 55905009 55905009 G A OR8J3 Silent p.F62F 0.38 TCGA-FS-A1Z3-06 11 55944407 55944407 G A OR5J2 Missense_Mutation p.G105E 0.40 tolerated(0.27) possibly_damaging(0.536) TCGA-FS-A1Z3-06 11 56057639 56057639 G A OR8H1 Silent p.L300L 0.39 TCGA-FS-A1Z3-06 11 5730793 5730793 G A TRIM22 Missense_Mutation p.G471E 0.43 tolerated(0.09) benign(0.004) TCGA-FS-A1Z3-06 11 57983038 57983038 C T OR1S1 Silent p.F274F 0.49 TCGA-FS-A1Z3-06 11 5799163 5799163 C T OR52N5 Silent p.A234A 0.43 TCGA-FS-A1Z3-06 11 5799718 5799718 C T OR52N5 Silent p.G49G 0.42 TCGA-FS-A1Z3-06 11 58170558 58170558 C T OR5B3 Missense_Mutation p.E109K 0.46 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-FS-A1Z3-06 11 58190358 58190358 T C OR5B2 Missense_Mutation p.K126R 0.31 tolerated_low_confidence(0.09) benign(0.033) TCGA-FS-A1Z3-06 11 58274928 58274928 G A OR5B21 Silent p.F217F 0.44 TCGA-FS-A1Z3-06 11 5878510 5878510 G A OR52E8 Silent p.I141I 0.41 TCGA-FS-A1Z3-06 11 5878925 5878925 C T OR52E8 Missense_Mutation p.G3E 0.40 tolerated_low_confidence(0.62) benign(0) TCGA-FS-A1Z3-06 11 59245168 59245168 G A OR4D10 Missense_Mutation p.R89K 0.46 tolerated(0.7) benign(0.001) TCGA-FS-A1Z3-06 11 5968801 5968801 C T OR56A3 Silent p.I75I 0.40 TCGA-FS-A1Z3-06 11 59857202 59857202 G A MS4A2 Missense_Mutation p.E32K 0.45 tolerated(0.15) benign(0.042) TCGA-FS-A1Z3-06 11 60558500 60558500 C T MS4A10 Silent p.A79A 0.39 TCGA-FS-A1Z3-06 11 609185 609185 C T PHRF1 Silent p.P1242P 0.27 TCGA-FS-A1Z3-06 11 62363555 62363555 G A MTA2 Silent p.I347I 0.37 TCGA-FS-A1Z3-06 11 62763521 62763521 C T SLC22A8 Missense_Mutation p.G289R 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-FS-A1Z3-06 11 6281242 6281242 C T CCKBR Silent p.L28L 0.30 TCGA-FS-A1Z3-06 11 64070988 64070988 G A TEX40 Silent p.A129A 0.54 TCGA-FS-A1Z3-06 11 64502690 64502690 G A RASGRP2 Missense_Mutation p.R436W 0.30 deleterious(0) probably_damaging(0.952) TCGA-FS-A1Z3-06 11 65266120 65266120 C T MALAT1 RNA 0.28 TCGA-FS-A1Z3-06 11 67261496 67261496 G A PITPNM1 Missense_Mutation p.H969Y 0.40 tolerated(1) benign(0.001) TCGA-FS-A1Z3-06 11 67261497 67261497 G A PITPNM1 Silent p.I968I 0.40 TCGA-FS-A1Z3-06 11 7063707 7063707 C T NLRP14 Silent p.F150F 0.44 TCGA-FS-A1Z3-06 11 7091574 7091574 C T NLRP14 Silent p.I1011I 0.35 TCGA-FS-A1Z3-06 11 71152336 71152339 CCAA - DHCR7 Frame_Shift_Del p.L187Pfs*33 0.48 TCGA-FS-A1Z3-06 11 72005444 72005444 G A CLPB Silent p.I565I 0.39 TCGA-FS-A1Z3-06 11 73073519 73073519 C T ARHGEF17 Missense_Mutation p.P1579L 0.35 tolerated(0.18) benign(0) TCGA-FS-A1Z3-06 11 7335157 7335157 C T SYT9 Silent p.I343I 0.36 TCGA-FS-A1Z3-06 11 76873905 76873905 G A MYO7A Missense_Mutation p.D521N 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1Z3-06 11 76886426 76886426 C T MYO7A Silent p.L701L 0.33 TCGA-FS-A1Z3-06 11 77451871 77451871 G T RSF1 Silent p.L161L 0.30 TCGA-FS-A1Z3-06 11 77934491 77934491 G A GAB2 Missense_Mutation p.P512S 0.41 deleterious(0) probably_damaging(0.973) TCGA-FS-A1Z3-06 11 78380298 78380298 C T TENM4 Silent p.G2364G 0.44 TCGA-FS-A1Z3-06 11 78516338 78516338 G A TENM4 Silent p.I726I 0.47 TCGA-FS-A1Z3-06 11 7981529 7981529 C T NLRP10 Missense_Mutation p.D544N 0.41 tolerated(0.07) possibly_damaging(0.776) TCGA-FS-A1Z3-06 11 8947545 8947545 C T C11orf16 Silent p.E223E 0.44 TCGA-FS-A1Z3-06 11 89896481 89896481 G A NAALAD2 Missense_Mutation p.R360K 0.36 deleterious(0) probably_damaging(0.973) TCGA-FS-A1Z3-06 11 89896702 89896702 G A NAALAD2 Splice_Site p.X399_splice 0.43 TCGA-FS-A1Z3-06 11 9187423 9187423 C T DENND5A Nonsense_Mutation p.W748* 0.39 TCGA-FS-A1Z3-06 11 93778875 93778875 G A HEPHL1 Silent p.R69R 0.33 TCGA-FS-A1Z3-06 12 104698385 104698385 T C EID3 Silent p.L225L 0.32 TCGA-FS-A1Z3-06 12 105446646 105446646 A G ALDH1L2 Missense_Mutation p.F451L 0.49 deleterious(0.02) probably_damaging(0.988) TCGA-FS-A1Z3-06 12 108035946 108035946 C T BTBD11 Nonsense_Mutation p.Q974* 0.37 TCGA-FS-A1Z3-06 12 108600113 108600113 C T WSCD2 Nonsense_Mutation p.R144* 0.36 TCGA-FS-A1Z3-06 12 108618589 108618589 C T WSCD2 Silent p.A252A 0.42 TCGA-FS-A1Z3-06 12 109046160 109046160 C T CORO1C Missense_Mutation p.D297N 0.54 tolerated(0.2) benign(0.064) TCGA-FS-A1Z3-06 12 110230181 110230181 G A TRPV4 Silent p.I626I 0.33 TCGA-FS-A1Z3-06 12 117718532 117718532 C T NOS1 Missense_Mutation p.E508K 0.38 deleterious(0.03) benign(0.399) TCGA-FS-A1Z3-06 12 117768185 117768185 C T NOS1 Silent p.K230K 0.40 TCGA-FS-A1Z3-06 12 119583450 119583450 T C SRRM4 Silent p.L346L 0.50 TCGA-FS-A1Z3-06 12 120584968 120584968 G A GCN1L1 Missense_Mutation p.S1612F 0.33 probably_damaging(0.998) TCGA-FS-A1Z3-06 12 122097174 122097174 T G MORN3 Missense_Mutation p.T76P 0.19 deleterious(0) probably_damaging(0.925) TCGA-FS-A1Z3-06 12 124415896 124415896 G A DNAH10 Missense_Mutation p.E4147K 0.33 possibly_damaging(0.846) TCGA-FS-A1Z3-06 12 125834288 125834288 C T TMEM132B Missense_Mutation p.P115S 0.42 tolerated(0.44) benign(0.234) TCGA-FS-A1Z3-06 12 125900147 125900147 G A TMEM132B Missense_Mutation p.E339K 0.49 tolerated(0.06) benign(0.439) TCGA-FS-A1Z3-06 12 126128626 126128626 C T TMEM132B Missense_Mutation p.S476F 0.37 deleterious(0) probably_damaging(0.957) TCGA-FS-A1Z3-06 12 129559150 129559150 G A TMEM132D Missense_Mutation p.T857I 0.29 deleterious(0) probably_damaging(0.986) TCGA-FS-A1Z3-06 12 130648726 130648726 C T FZD10 Silent p.I413I 0.41 TCGA-FS-A1Z3-06 12 133727701 133727701 A T CTD-2140B24.4 Missense_Mutation p.N41Y 0.47 deleterious(0) benign(0.023) TCGA-FS-A1Z3-06 12 13715852 13715852 G A GRIN2B Silent p.A1440A 0.51 TCGA-FS-A1Z3-06 12 13716965 13716965 G A GRIN2B Silent p.T1069T 0.18 TCGA-FS-A1Z3-06 12 15102817 15102817 G A ARHGDIB Missense_Mutation p.P62S 0.36 deleterious(0.05) benign(0.025) TCGA-FS-A1Z3-06 12 15264278 15264278 C T RERG Silent p.Q64Q 0.24 TCGA-FS-A1Z3-06 12 15264295 15264295 G A RERG Silent p.L59L 0.24 TCGA-FS-A1Z3-06 12 18234186 18234186 C T RERGL Missense_Mutation p.G186E 0.48 deleterious(0) probably_damaging(0.961) TCGA-FS-A1Z3-06 12 18876454 18876454 C T PLCZ1 Missense_Mutation p.G53E 0.35 tolerated(0.09) possibly_damaging(0.56) TCGA-FS-A1Z3-06 12 21639515 21639515 A - RECQL Frame_Shift_Del p.F133Lfs*8 0.16 TCGA-FS-A1Z3-06 12 330160 330160 G A SLC6A13 Missense_Mutation p.P588L 0.36 deleterious(0.01) benign(0.02) TCGA-FS-A1Z3-06 12 333188 333188 G A SLC6A13 Silent p.S427S 0.29 TCGA-FS-A1Z3-06 12 333189 333189 G C SLC6A13 Missense_Mutation p.S427C 0.28 tolerated(0.73) benign(0.072) TCGA-FS-A1Z3-06 12 33559958 33559958 C T SYT10 Silent p.K281K 0.52 TCGA-FS-A1Z3-06 12 33579330 33579330 C T SYT10 Nonsense_Mutation p.W84* 0.53 TCGA-FS-A1Z3-06 12 40740560 40740560 C T LRRK2 Missense_Mutation p.R2039C 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 12 416919 416919 G A KDM5A Missense_Mutation p.L1211F 0.45 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 12 43826205 43826205 G A ADAMTS20 Missense_Mutation p.R1000C 0.37 tolerated(0.05) probably_damaging(0.968) TCGA-FS-A1Z3-06 12 43826601 43826601 C T ADAMTS20 Missense_Mutation p.G912S 0.44 tolerated(0.44) benign(0.435) TCGA-FS-A1Z3-06 12 44165129 44165129 C T IRAK4 Nonsense_Mutation p.Q90* 0.33 TCGA-FS-A1Z3-06 12 4609424 4609424 C T C12orf4 Silent p.S440S 0.42 TCGA-FS-A1Z3-06 12 46243434 46243434 T A ARID2 Missense_Mutation p.V596E 0.36 deleterious(0.01) probably_damaging(0.948) TCGA-FS-A1Z3-06 12 4736815 4736815 C T AKAP3 Missense_Mutation p.R418Q 0.44 tolerated(0.7) benign(0.042) TCGA-FS-A1Z3-06 12 48393854 48393854 C T COL2A1 Nonsense_Mutation p.W47* 0.37 TCGA-FS-A1Z3-06 12 4872467 4872467 G A GALNT8 Missense_Mutation p.E470K 0.40 tolerated(0.82) benign(0.001) TCGA-FS-A1Z3-06 12 48919578 48919578 T A OR8S1 Missense_Mutation p.L55H 0.39 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 12 4920690 4920690 G A KCNA6 Missense_Mutation p.G495R 0.39 tolerated_low_confidence(0.1) benign(0.167) TCGA-FS-A1Z3-06 12 49397577 49397577 C T PRKAG1 Silent p.Q231Q 0.40 TCGA-FS-A1Z3-06 12 52799753 52799753 G T KRT82 Silent p.V103V 0.47 TCGA-FS-A1Z3-06 12 53045473 53045473 C T KRT2 Missense_Mutation p.E152K 0.39 deleterious(0.02) benign(0.301) TCGA-FS-A1Z3-06 12 53451406 53451406 C T TENC1 Missense_Mutation p.P311S 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1Z3-06 12 53861171 53861171 C T PCBP2 Intron 0.59 TCGA-FS-A1Z3-06 12 54427299 54427299 G A HOXC5 Silent p.L131L 0.40 TCGA-FS-A1Z3-06 12 54905870 54905870 C T NCKAP1L Silent p.L308L 0.47 TCGA-FS-A1Z3-06 12 55420886 55420886 C T NEUROD4 Silent p.L221L 0.42 TCGA-FS-A1Z3-06 12 55886864 55886864 G A OR6C68 Missense_Mutation p.A235T 0.54 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-FS-A1Z3-06 12 57115012 57115012 G A NACA Missense_Mutation p.T101I 0.35 tolerated_low_confidence(0.27) benign(0.001) TCGA-FS-A1Z3-06 12 57921367 57921367 C T MBD6 Silent p.S720S 0.38 TCGA-FS-A1Z3-06 12 58202061 58202061 A C AVIL Missense_Mutation p.D370E 0.05 tolerated(0.47) benign(0.001) TCGA-FS-A1Z3-06 12 63977679 63977679 A T DPY19L2 Intron 0.60 TCGA-FS-A1Z3-06 12 66308744 66308744 C T HMGA2 Intron 0.38 TCGA-FS-A1Z3-06 12 6646283 6646283 G A GAPDH Missense_Mutation p.G115E 0.38 deleterious_low_confidence(0.04) benign(0.057) TCGA-FS-A1Z3-06 12 6709724 6709724 G A CHD4 Nonsense_Mutation p.R347* 0.47 TCGA-FS-A1Z3-06 12 68642506 68642506 C T IL22 3'UTR 0.29 TCGA-FS-A1Z3-06 12 71286524 71286524 C T PTPRR Missense_Mutation p.A98T 0.38 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-FS-A1Z3-06 12 71531783 71531783 C T TSPAN8 Missense_Mutation p.G132R 0.39 tolerated(0.37) benign(0.063) TCGA-FS-A1Z3-06 12 7640594 7640594 C T CD163 Missense_Mutation p.D504N 0.45 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A1Z3-06 12 77244668 77244668 G A ZDHHC17 Missense_Mutation p.R601Q 0.47 tolerated(0.14) possibly_damaging(0.885) TCGA-FS-A1Z3-06 12 78516158 78516158 C T NAV3 Silent p.V1396V 0.37 TCGA-FS-A1Z3-06 12 7864227 7864227 G A DPPA3 Missense_Mutation p.E21K 0.36 deleterious(0) probably_damaging(0.981) TCGA-FS-A1Z3-06 12 81627211 81627211 T G ACSS3 Missense_Mutation p.N560K 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 12 86373174 86373174 C T MGAT4C Missense_Mutation p.G444S 0.24 tolerated(0.34) benign(0.004) TCGA-FS-A1Z3-06 12 88381736 88381736 C T C12orf50 Silent p.K236K 0.49 TCGA-FS-A1Z3-06 12 89985011 89985011 C T ATP2B1 Missense_Mutation p.R1138K 0.41 tolerated_low_confidence(0.41) benign(0.079) TCGA-FS-A1Z3-06 12 91502336 91502336 C T LUM Missense_Mutation p.D141N 0.53 deleterious(0) possibly_damaging(0.898) TCGA-FS-A1Z3-06 12 99145181 99145181 T A ANKS1B Missense_Mutation p.K1208N 0.44 deleterious(0) probably_damaging(0.986) TCGA-FS-A1Z3-06 13 100617849 100617849 C T ZIC5 Missense_Mutation p.G592R 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-FS-A1Z3-06 13 103698469 103698469 T C SLC10A2 3'UTR 0.30 TCGA-FS-A1Z3-06 13 107822868 107822868 C T FAM155A Missense_Mutation p.E452K 0.64 deleterious(0) benign(0.107) TCGA-FS-A1Z3-06 13 109318280 109318280 C T MYO16 Silent p.I3I 0.29 TCGA-FS-A1Z3-06 13 109507818 109507818 G A MYO16 Missense_Mutation p.D404N 0.60 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z3-06 13 111176261 111176261 C T RAB20 Silent p.E152E 0.25 TCGA-FS-A1Z3-06 13 20004618 20004618 C T TPTE2 Missense_Mutation p.G431E 0.17 tolerated(0.63) benign(0.003) TCGA-FS-A1Z3-06 13 20048175 20048175 G A TPTE2 Missense_Mutation p.L91F 0.31 deleterious(0.04) benign(0.008) TCGA-FS-A1Z3-06 13 25481089 25481089 C T CENPJ Missense_Mutation p.G363R 0.56 deleterious(0.05) benign(0.124) TCGA-FS-A1Z3-06 13 25671851 25671851 G A PABPC3 Silent p.R505R 0.61 TCGA-FS-A1Z3-06 13 38248494 38248494 C T TRPC4 Nonsense_Mutation p.W415* 0.67 TCGA-FS-A1Z3-06 13 39454684 39454684 G A FREM2 Silent p.G3090G 0.26 TCGA-FS-A1Z3-06 13 39540966 39540966 G A STOML3 Missense_Mutation p.A291V 0.63 deleterious_low_confidence(0) benign(0.063) TCGA-FS-A1Z3-06 13 44455654 44455654 T C LACC1 Missense_Mutation p.L178S 0.58 deleterious(0) possibly_damaging(0.774) TCGA-FS-A1Z3-06 13 50296138 50296138 G A KPNA3 Missense_Mutation p.L227F 0.25 deleterious(0.02) possibly_damaging(0.719) TCGA-FS-A1Z3-06 13 52542733 52542733 G T ATP7B Silent p.S518S 0.26 TCGA-FS-A1Z3-06 13 52598464 52598464 C T ALG11 Missense_Mutation p.P200S 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 13 53313178 53313178 C T LECT1 Silent p.G67G 0.37 TCGA-FS-A1Z3-06 13 53418961 53418961 G A PCDH8 Nonsense_Mutation p.Q983* 0.31 TCGA-FS-A1Z3-06 13 84455611 84455611 G A SLITRK1 Missense_Mutation p.S11F 0.56 tolerated(0.09) benign(0.005) TCGA-FS-A1Z3-06 13 95816659 95816659 G A ABCC4 Silent p.F716F 0.18 TCGA-FS-A1Z3-06 13 96237063 96237063 C T DZIP1 Silent p.A817A 0.28 TCGA-FS-A1Z3-06 13 96530022 96530022 C A UGGT2 Missense_Mutation p.R1106L 0.30 deleterious(0) possibly_damaging(0.512) TCGA-FS-A1Z3-06 14 101522554 101522554 C T MIR487A 3'Flank 0.38 TCGA-FS-A1Z3-06 14 102028470 102028470 C T DIO3 Missense_Mutation p.P213S 0.37 tolerated(0.51) benign(0.225) TCGA-FS-A1Z3-06 14 103404697 103404697 G A CDC42BPB Silent p.L1627L 0.48 TCGA-FS-A1Z3-06 14 105936237 105936237 C T MTA1 Silent p.I635I 0.46 TCGA-FS-A1Z3-06 14 106405789 106405789 G A IGHV6-1 Missense_Mutation p.S62F 0.37 tolerated(0.1) possibly_damaging(0.655) TCGA-FS-A1Z3-06 14 106805374 106805374 C T IGHV4-31 Silent p.G63G 0.11 TCGA-FS-A1Z3-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.46 deleterious(0) possibly_damaging(0.659) TCGA-FS-A1Z3-06 14 20483064 20483064 C T OR4K14 Missense_Mutation p.G97R 0.34 deleterious(0) probably_damaging(0.963) TCGA-FS-A1Z3-06 14 20502268 20502268 G A OR4K13 Missense_Mutation p.S217F 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 14 21215878 21215878 G A EDDM3A Missense_Mutation p.E47K 0.38 tolerated(0.85) benign(0.028) TCGA-FS-A1Z3-06 14 21216002 21216002 G A EDDM3A Missense_Mutation p.R88Q 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1Z3-06 14 21424489 21424489 C T RNASE2 3'UTR 0.40 TCGA-FS-A1Z3-06 14 21498787 21498787 G A TPPP2 Missense_Mutation p.G16E 0.39 deleterious(0.04) possibly_damaging(0.711) TCGA-FS-A1Z3-06 14 21967496 21967496 G A METTL3 Missense_Mutation p.P491L 0.34 deleterious(0.04) possibly_damaging(0.665) TCGA-FS-A1Z3-06 14 22574012 22574012 G A TRAV24 Missense_Mutation p.E78K 0.44 tolerated(0.09) benign(0.42) TCGA-FS-A1Z3-06 14 23314938 23314938 G A MMP14 Missense_Mutation p.G480E 0.37 deleterious(0.01) possibly_damaging(0.514) TCGA-FS-A1Z3-06 14 23374144 23374144 A G RBM23 Silent p.G268G 0.45 TCGA-FS-A1Z3-06 14 23847989 23847989 C T CMTM5 Intron 0.24 TCGA-FS-A1Z3-06 14 23938907 23938907 G A NGDN 5'UTR 0.38 TCGA-FS-A1Z3-06 14 24845860 24845860 C T NFATC4 Missense_Mutation p.S869F 0.44 tolerated_low_confidence(0.13) benign(0.122) TCGA-FS-A1Z3-06 14 31792914 31792914 G A HEATR5A Missense_Mutation p.S1215F 0.31 tolerated(0.16) benign(0.005) TCGA-FS-A1Z3-06 14 33147619 33147619 G A AKAP6 Missense_Mutation p.E945K 0.47 deleterious(0.03) probably_damaging(0.985) TCGA-FS-A1Z3-06 14 33293129 33293129 C T AKAP6 Missense_Mutation p.S2037F 0.34 deleterious(0) possibly_damaging(0.878) TCGA-FS-A1Z3-06 14 51057789 51057789 A G ATL1 Missense_Mutation p.K138R 0.54 tolerated(0.15) benign(0.001) TCGA-FS-A1Z3-06 14 52781512 52781512 C T PTGER2 Silent p.T82T 0.49 TCGA-FS-A1Z3-06 14 55529445 55529445 C T MAPK1IP1L Missense_Mutation p.P43L 0.44 tolerated_low_confidence(0.71) probably_damaging(0.96) TCGA-FS-A1Z3-06 14 56119569 56119569 T A KTN1 Missense_Mutation p.L869I 0.36 tolerated(0.16) benign(0.067) TCGA-FS-A1Z3-06 14 56119570 56119570 T A KTN1 Nonsense_Mutation p.L869* 0.36 TCGA-FS-A1Z3-06 14 57269062 57269062 C T OTX2 Silent p.K95K 0.35 TCGA-FS-A1Z3-06 14 61518625 61518625 A T SLC38A6 Missense_Mutation p.I391F 0.18 deleterious(0) probably_damaging(0.984) TCGA-FS-A1Z3-06 14 63246518 63246518 G A KCNH5 Silent p.V649V 0.35 TCGA-FS-A1Z3-06 14 63269224 63269224 G A KCNH5 Missense_Mutation p.P549S 0.34 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A1Z3-06 14 63468177 63468177 C T KCNH5 Missense_Mutation p.R102K 0.33 tolerated(0.3) benign(0.092) TCGA-FS-A1Z3-06 14 64529517 64529517 C T SYNE2 Silent p.Y3372Y 0.30 TCGA-FS-A1Z3-06 14 64954344 64954344 G A ZBTB25 Missense_Mutation p.S202F 0.37 deleterious(0.03) benign(0.008) TCGA-FS-A1Z3-06 14 70634132 70634132 C T SLC8A3 Silent p.V336V 0.43 TCGA-FS-A1Z3-06 14 70713473 70713473 G A ADAM21P1 RNA 0.33 TCGA-FS-A1Z3-06 14 70855188 70855188 G A SYNJ2BP Missense_Mutation p.S67L 0.45 tolerated(0.12) probably_damaging(0.981) TCGA-FS-A1Z3-06 14 73444715 73444715 G A ZFYVE1 Missense_Mutation p.R519C 0.49 deleterious(0) benign(0.375) TCGA-FS-A1Z3-06 14 73987670 73987670 C T HEATR4 Missense_Mutation p.E319K 0.44 tolerated(0.81) benign(0.004) TCGA-FS-A1Z3-06 14 74186144 74186144 G T ELMSAN1 Missense_Mutation p.Q1000K 0.39 deleterious(0.04) benign(0.034) TCGA-FS-A1Z3-06 14 74988710 74988710 C T LTBP2 Missense_Mutation p.G898R 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 14 75265550 75265550 C T YLPM1 Missense_Mutation p.H1184Y 0.38 probably_damaging(0.946) TCGA-FS-A1Z3-06 14 75329591 75329591 A G PROX2 Intron 0.33 TCGA-FS-A1Z3-06 14 81610463 81610463 G A TSHR Silent p.R687R 0.45 TCGA-FS-A1Z3-06 14 89123778 89123778 G A EML5 Missense_Mutation p.R1316C 0.38 deleterious(0) probably_damaging(0.987) TCGA-FS-A1Z3-06 14 90730089 90730089 C T PSMC1 Silent p.A121A 0.41 TCGA-FS-A1Z3-06 14 90870227 90870227 C T CALM1 Missense_Mutation p.P67L 0.38 deleterious_low_confidence(0.04) benign(0.302) TCGA-FS-A1Z3-06 14 91744483 91744483 G A CCDC88C Missense_Mutation p.A1614V 0.39 tolerated(0.21) benign(0.007) TCGA-FS-A1Z3-06 14 91760626 91760626 T A CCDC88C Missense_Mutation p.N1335Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 14 91791245 91791245 C T CCDC88C Missense_Mutation p.R407Q 0.37 deleterious(0.01) benign(0.382) TCGA-FS-A1Z3-06 14 92264669 92264669 C T TC2N Missense_Mutation p.E238K 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-FS-A1Z3-06 14 95089958 95089958 A G SERPINA3 Missense_Mutation p.K360R 0.37 tolerated(0.13) benign(0.054) TCGA-FS-A1Z3-06 14 95556876 95556876 G A DICER1 Nonsense_Mutation p.R1910* 0.43 TCGA-FS-A1Z3-06 14 99640587 99640587 G A BCL11B Silent p.P862P 0.41 TCGA-FS-A1Z3-06 15 101528919 101528919 C T LRRK1 Silent p.L172L 0.28 TCGA-FS-A1Z3-06 15 102252171 102252171 C T TARSL2 Missense_Mutation p.E242K 0.33 deleterious(0) benign(0.272) TCGA-FS-A1Z3-06 15 20489448 20489448 G A CHEK2P2 RNA 0.16 TCGA-FS-A1Z3-06 15 22332461 22332461 C T RP11-69H14.6 RNA 0.19 TCGA-FS-A1Z3-06 15 22369005 22369005 C T OR4M2 Silent p.L144L 0.22 TCGA-FS-A1Z3-06 15 23890702 23890702 C T MAGEL2 Missense_Mutation p.G127S 0.24 tolerated_low_confidence(0.07) benign(0.197) TCGA-FS-A1Z3-06 15 23890954 23890954 C T MAGEL2 Missense_Mutation p.E43K 0.29 tolerated_low_confidence(0.07) benign(0.326) TCGA-FS-A1Z3-06 15 25330417 25330417 C T SNORD116-18 5'Flank 0.33 TCGA-FS-A1Z3-06 15 25417693 25417693 C T SNORD115-3 5'Flank 0.22 TCGA-FS-A1Z3-06 15 25421987 25421987 G A SNORD115-4 RNA 0.24 TCGA-FS-A1Z3-06 15 25436628 25436628 G A SNORD115-12 RNA 0.29 TCGA-FS-A1Z3-06 15 25486746 25486746 C T SNORD115-40 5'Flank 0.58 TCGA-FS-A1Z3-06 15 25959148 25959148 G T ATP10A Missense_Mutation p.Q673K 0.30 tolerated(0.8) benign(0.103) TCGA-FS-A1Z3-06 15 28412966 28412966 G A HERC2 Missense_Mutation p.S3474F 0.59 benign(0.193) TCGA-FS-A1Z3-06 15 38990343 38990343 G A C15orf53 Missense_Mutation p.G46E 0.32 tolerated_low_confidence(0.09) probably_damaging(0.988) TCGA-FS-A1Z3-06 15 40659787 40659787 C T DISP2 Missense_Mutation p.P492S 0.26 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 15 41059480 41059480 G A GCHFR Missense_Mutation p.R63K 0.29 tolerated(0.58) benign(0.001) TCGA-FS-A1Z3-06 15 41099660 41099660 G T ZFYVE19 5'UTR 0.29 TCGA-FS-A1Z3-06 15 41224549 41224549 G A DLL4 Missense_Mutation p.E252K 0.26 deleterious(0.05) benign(0.004) TCGA-FS-A1Z3-06 15 42054441 42054441 C T MGA Missense_Mutation p.P2542L 0.63 tolerated(0.07) benign(0.003) TCGA-FS-A1Z3-06 15 42178130 42178130 G A SPTBN5 Silent p.F441F 0.27 TCGA-FS-A1Z3-06 15 42276716 42276716 C T PLA2G4E Missense_Mutation p.M768I 0.56 deleterious(0.02) benign(0) TCGA-FS-A1Z3-06 15 42678418 42678418 C T CAPN3 Missense_Mutation p.L145F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1Z3-06 15 43489561 43489561 A T EPB42 Missense_Mutation p.M702K 0.37 tolerated(0.29) benign(0.373) TCGA-FS-A1Z3-06 15 43527779 43527779 G A TGM5 Silent p.S534S 0.25 TCGA-FS-A1Z3-06 15 45059941 45059941 G A TRIM69 Missense_Mutation p.E492K 0.25 deleterious(0.01) possibly_damaging(0.688) TCGA-FS-A1Z3-06 15 49254728 49254728 G A SHC4 Missense_Mutation p.S162L 0.24 tolerated(0.27) benign(0.008) TCGA-FS-A1Z3-06 15 49436468 49436468 C T COPS2 Missense_Mutation p.G68R 0.29 deleterious(0) possibly_damaging(0.677) TCGA-FS-A1Z3-06 15 52902537 52902537 T C FAM214A Missense_Mutation p.T192A 0.66 tolerated(0.09) possibly_damaging(0.451) TCGA-FS-A1Z3-06 15 55931947 55931947 G A PRTG Silent p.F739F 0.22 TCGA-FS-A1Z3-06 15 65499177 65499177 C T CILP Missense_Mutation p.E123K 0.26 deleterious(0) possibly_damaging(0.699) TCGA-FS-A1Z3-06 15 67073433 67073433 G A SMAD6 Missense_Mutation p.D351N 0.71 deleterious(0) benign(0.276) TCGA-FS-A1Z3-06 15 67629389 67629389 C T IQCH Missense_Mutation p.P155L 0.49 tolerated(0.05) possibly_damaging(0.684) TCGA-FS-A1Z3-06 15 71300720 71300720 C T LRRC49 Missense_Mutation p.P396L 0.24 tolerated(0.41) benign(0.001) TCGA-FS-A1Z3-06 15 72144482 72144482 G A MYO9A Nonsense_Mutation p.R2156* 0.55 TCGA-FS-A1Z3-06 15 73862573 73862573 C A NPTN Missense_Mutation p.L344F 0.31 deleterious(0) probably_damaging(0.991) TCGA-FS-A1Z3-06 15 74327936 74327936 C T PML Intron 0.51 TCGA-FS-A1Z3-06 15 74476262 74476262 G A STRA6 Missense_Mutation p.P451L 0.58 deleterious(0.02) benign(0.045) TCGA-FS-A1Z3-06 15 74640303 74640303 G A CYP11A1 Silent p.F121F 0.24 TCGA-FS-A1Z3-06 15 78212392 78212392 C T RP11-114H24.7 Intron 0.13 TCGA-FS-A1Z3-06 15 81627296 81627296 C T TMC3 Missense_Mutation p.E742K 0.69 tolerated(0.58) benign(0.03) TCGA-FS-A1Z3-06 15 90176402 90176402 G C KIF7 Missense_Mutation p.N896K 0.26 tolerated(0.15) possibly_damaging(0.866) TCGA-FS-A1Z3-06 15 90281358 90281358 C T WDR93 Silent p.L618L 0.29 TCGA-FS-A1Z3-06 15 91424778 91424778 C T FURIN Silent p.S685S 0.31 TCGA-FS-A1Z3-06 15 94883460 94883460 C T MCTP2 Silent p.F271F 0.51 TCGA-FS-A1Z3-06 15 94899259 94899259 G A MCTP2 Intron 0.43 TCGA-FS-A1Z3-06 16 10032409 10032409 C T GRIN2A Splice_Site p.X139_splice 0.55 TCGA-FS-A1Z3-06 16 113625 113625 G A RHBDF1 Missense_Mutation p.P141L 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-FS-A1Z3-06 16 11370185 11370185 C T PRM2 Missense_Mutation p.E15K 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.635) TCGA-FS-A1Z3-06 16 14014015 14014015 G A ERCC4 5'UTR 0.26 TCGA-FS-A1Z3-06 16 15225227 15225227 G A RP11-1186N24.5 RNA 0.25 TCGA-FS-A1Z3-06 16 15225228 15225228 G A RP11-1186N24.5 RNA 0.25 TCGA-FS-A1Z3-06 16 1547058 1547058 C T TELO2 Missense_Mutation p.S212F 0.56 deleterious(0.02) possibly_damaging(0.635) TCGA-FS-A1Z3-06 16 15851708 15851708 G A MYH11 Silent p.P524P 0.39 TCGA-FS-A1Z3-06 16 16244078 16244078 C T ABCC6 Missense_Mutation p.G1475E 0.21 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 16 19020501 19020501 C T TMC7 Silent p.L25L 0.38 TCGA-FS-A1Z3-06 16 20477031 20477031 C T ACSM2A Silent p.L124L 0.55 TCGA-FS-A1Z3-06 16 20480865 20480865 G A ACSM2A Missense_Mutation p.M140I 0.29 deleterious(0) possibly_damaging(0.687) TCGA-FS-A1Z3-06 16 21008734 21008734 C T DNAH3 Missense_Mutation p.E2158K 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 16 24373228 24373228 G A CACNG3 3'UTR 0.74 TCGA-FS-A1Z3-06 16 2493679 2493680 - AAC CCNF In_Frame_Ins p.N270dup 0.39 TCGA-FS-A1Z3-06 16 2578591 2578591 C T AMDHD2 Missense_Mutation p.S334F 0.51 tolerated(0.12) benign(0.087) TCGA-FS-A1Z3-06 16 26147561 26147561 G A HS3ST4 Missense_Mutation p.D455N 0.37 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-FS-A1Z3-06 16 29891326 29891326 C A SEZ6L2 Missense_Mutation p.D478Y 0.15 deleterious(0.04) benign(0.33) TCGA-FS-A1Z3-06 16 30035187 30035187 C T C16orf92 Silent p.P90P 0.33 TCGA-FS-A1Z3-06 16 31045633 31045633 C T STX4 Silent p.P73P 0.32 TCGA-FS-A1Z3-06 16 31499648 31499648 C T SLC5A2 Intron 0.38 TCGA-FS-A1Z3-06 16 3254555 3254555 C T OR1F1 Silent p.F103F 0.39 TCGA-FS-A1Z3-06 16 51173535 51173535 C T SALL1 Silent p.L866L 0.42 TCGA-FS-A1Z3-06 16 51173934 51173934 G A SALL1 Silent p.P733P 0.48 TCGA-FS-A1Z3-06 16 53404718 53404718 C T RP11-44F14.1 RNA 0.53 TCGA-FS-A1Z3-06 16 57100495 57100495 C T NLRC5 Nonsense_Mutation p.Q1431* 0.31 TCGA-FS-A1Z3-06 16 57171134 57171134 C T CPNE2 Silent p.S414S 0.33 TCGA-FS-A1Z3-06 16 57416899 57416899 C T CX3CL1 Silent p.I383I 0.41 TCGA-FS-A1Z3-06 16 57785890 57785890 C T KATNB1 Silent p.F185F 0.36 TCGA-FS-A1Z3-06 16 596831 596831 C T CAPN15 5'UTR 0.38 TCGA-FS-A1Z3-06 16 66612856 66612856 G A CMTM1 Silent p.K271K 0.48 TCGA-FS-A1Z3-06 16 66956118 66956118 C T RRAD Missense_Mutation p.R263Q 0.35 tolerated(0.18) possibly_damaging(0.708) TCGA-FS-A1Z3-06 16 67165208 67165208 T C C16orf70 Missense_Mutation p.L84S 0.30 deleterious(0) probably_damaging(0.961) TCGA-FS-A1Z3-06 16 69148556 69148556 G A HAS3 Nonsense_Mutation p.W350* 0.38 TCGA-FS-A1Z3-06 16 70935003 70935003 C T HYDIN Silent p.L2984L 0.18 TCGA-FS-A1Z3-06 16 70954610 70954610 C T HYDIN Missense_Mutation p.E2557K 0.25 benign(0.012) TCGA-FS-A1Z3-06 16 71724592 71724592 G A PHLPP2 Missense_Mutation p.R147C 0.43 deleterious(0.04) benign(0.167) TCGA-FS-A1Z3-06 16 72991358 72991358 G A ZFHX3 Missense_Mutation p.A896V 0.37 benign(0.065) TCGA-FS-A1Z3-06 16 7383050 7383050 G A RBFOX1 Missense_Mutation p.M16I 0.45 tolerated_low_confidence(0.49) benign(0.012) TCGA-FS-A1Z3-06 16 74419244 74419244 C T NPIPB15 Missense_Mutation p.S85F 0.22 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-FS-A1Z3-06 16 74719425 74719425 G A MLKL Missense_Mutation p.P260L 0.39 deleterious(0) possibly_damaging(0.724) TCGA-FS-A1Z3-06 16 74729419 74729419 G A MLKL Silent p.F79F 0.50 TCGA-FS-A1Z3-06 16 7721558 7721558 G A RBFOX1 Splice_Site p.X317_splice 0.26 TCGA-FS-A1Z3-06 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.38 tolerated(1) benign(0.004) TCGA-FS-A1Z3-06 16 78064399 78064399 G A CLEC3A Silent p.L94L 0.28 TCGA-FS-A1Z3-06 16 81925096 81925096 C T PLCG2 Missense_Mutation p.S296L 0.40 deleterious(0.01) probably_damaging(0.957) TCGA-FS-A1Z3-06 16 81972454 81972454 C T PLCG2 Missense_Mutation p.P1083S 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 16 82660706 82660706 G A CDH13 Missense_Mutation p.R15Q 0.62 deleterious_low_confidence(0) benign(0) TCGA-FS-A1Z3-06 16 84690632 84690632 C T KLHL36 Silent p.S73S 0.38 TCGA-FS-A1Z3-06 16 85952157 85952157 G A IRF8 Missense_Mutation p.G246S 0.44 tolerated(1) benign(0.036) TCGA-FS-A1Z3-06 16 8900254 8900254 C T PMM2 Missense_Mutation p.P113S 0.38 deleterious(0.01) possibly_damaging(0.888) TCGA-FS-A1Z3-06 16 8900255 8900255 C T PMM2 Missense_Mutation p.P113L 0.37 deleterious(0) probably_damaging(0.984) TCGA-FS-A1Z3-06 16 9927992 9927992 C T GRIN2A Missense_Mutation p.G583R 0.41 deleterious(0) possibly_damaging(0.489) TCGA-FS-A1Z3-06 17 10312759 10312759 G A MYH8 Silent p.A578A 0.44 TCGA-FS-A1Z3-06 17 10364285 10364285 C T MYH4 Missense_Mutation p.M365I 0.32 deleterious(0.02) benign(0.072) TCGA-FS-A1Z3-06 17 10406471 10406471 C T MYH1 Missense_Mutation p.R929K 0.31 tolerated(0.07) probably_damaging(0.992) TCGA-FS-A1Z3-06 17 10408168 10408168 G A MYH1 Silent p.L884L 0.37 TCGA-FS-A1Z3-06 17 10439889 10439889 C T MYH2 Silent p.K644K 0.37 TCGA-FS-A1Z3-06 17 10446432 10446432 G A MYH2 Missense_Mutation p.S263F 0.38 deleterious(0.01) possibly_damaging(0.885) TCGA-FS-A1Z3-06 17 10447033 10447033 G A MYH2 Missense_Mutation p.R246C 0.34 deleterious(0) possibly_damaging(0.473) TCGA-FS-A1Z3-06 17 11651075 11651075 G A DNAH9 Nonsense_Mutation p.W2201* 0.46 TCGA-FS-A1Z3-06 17 12618858 12618858 C T MYOCD Silent p.F48F 0.34 TCGA-FS-A1Z3-06 17 12626277 12626277 G A MYOCD Missense_Mutation p.E123K 0.44 tolerated(0.05) probably_damaging(0.986) TCGA-FS-A1Z3-06 17 1577111 1577111 G A PRPF8 Silent p.I1125I 0.35 TCGA-FS-A1Z3-06 17 1657526 1657526 G A SERPINF2 Missense_Mutation p.E392K 0.36 deleterious(0.02) possibly_damaging(0.7) TCGA-FS-A1Z3-06 17 16852251 16852251 G A TNFRSF13B Silent p.L82L 0.43 TCGA-FS-A1Z3-06 17 18054713 18054713 A C MYO15A Silent p.S2553S 0.34 TCGA-FS-A1Z3-06 17 18923089 18923089 C T SLC5A10 Silent p.L508L 0.38 TCGA-FS-A1Z3-06 17 18923740 18923740 C T SLC5A10 Missense_Mutation p.A612V 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 17 19284811 19284811 C T MAPK7 Missense_Mutation p.A430V 0.39 tolerated_low_confidence(0.13) unknown(0) TCGA-FS-A1Z3-06 17 25752543 25752543 C T TBC1D3P5 RNA 0.42 TCGA-FS-A1Z3-06 17 26881493 26881493 G A PIGS Silent p.A471A 0.29 TCGA-FS-A1Z3-06 17 27028485 27028485 G A SUPT6H Missense_Mutation p.G1675R 0.26 tolerated(0.56) benign(0.064) TCGA-FS-A1Z3-06 17 2935732 2935732 C T RAP1GAP2 3'UTR 0.43 TCGA-FS-A1Z3-06 17 29562741 29562741 T A NF1 Missense_Mutation p.L1274H 0.51 deleterious(0.02) benign(0.113) TCGA-FS-A1Z3-06 17 3119431 3119431 G A OR1A1 Missense_Mutation p.E173K 0.31 tolerated(0.76) benign(0.026) TCGA-FS-A1Z3-06 17 31352993 31352993 G A ASIC2 Silent p.A382A 0.31 TCGA-FS-A1Z3-06 17 3195299 3195299 G A OR3A1 Missense_Mutation p.S193F 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 17 32964901 32964901 G A TMEM132E Missense_Mutation p.E869K 0.50 deleterious(0.02) probably_damaging(0.962) TCGA-FS-A1Z3-06 17 33772687 33772687 G A SLFN13 Missense_Mutation p.H5Y 0.45 tolerated(1) benign(0.002) TCGA-FS-A1Z3-06 17 34171101 34171101 C T TAF15 Missense_Mutation p.R343C 0.37 deleterious_low_confidence(0.03) benign(0.018) TCGA-FS-A1Z3-06 17 34192307 34192307 C T C17orf66 Missense_Mutation p.E78K 0.42 tolerated(0.07) benign(0.209) TCGA-FS-A1Z3-06 17 34308409 34308409 G A CCL16 Silent p.I16I 0.48 TCGA-FS-A1Z3-06 17 3595052 3595052 G C P2RX5 Silent p.V58V 0.37 TCGA-FS-A1Z3-06 17 36521280 36521280 C T SOCS7 Missense_Mutation p.P350S 0.35 deleterious(0.05) possibly_damaging(0.468) TCGA-FS-A1Z3-06 17 37901701 37901701 G A GRB7 Silent p.V396V 0.45 TCGA-FS-A1Z3-06 17 39165008 39165008 G A KRTAP3-1 3'UTR 0.37 TCGA-FS-A1Z3-06 17 39197478 39197478 G A KRTAP1-1 Missense_Mutation p.P58S 0.36 tolerated(0.13) possibly_damaging(0.876) TCGA-FS-A1Z3-06 17 39505678 39505678 G A KRT33A Silent p.I117I 0.50 TCGA-FS-A1Z3-06 17 39723556 39723556 C T KRT9 Missense_Mutation p.G614E 0.38 unknown(0) TCGA-FS-A1Z3-06 17 40322138 40322138 C T KCNH4 Silent p.T459T 0.34 TCGA-FS-A1Z3-06 17 40693178 40693178 C T NAGLU Silent p.S325S 0.38 TCGA-FS-A1Z3-06 17 42745038 42745038 G A C17orf104 Missense_Mutation p.G587R 0.27 tolerated(0.18) possibly_damaging(0.823) TCGA-FS-A1Z3-06 17 42745039 42745039 G A C17orf104 Missense_Mutation p.G587E 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-FS-A1Z3-06 17 45452298 45452298 T A EFCAB13 Silent p.V446V 0.30 TCGA-FS-A1Z3-06 17 4850206 4850206 G A PFN1 Intron 0.46 TCGA-FS-A1Z3-06 17 48741448 48741448 C T ABCC3 Silent p.I438I 0.54 TCGA-FS-A1Z3-06 17 49708789 49708789 T A CA10 3'UTR 0.50 TCGA-FS-A1Z3-06 17 51900577 51900577 G A KIF2B Silent p.V61V 0.41 TCGA-FS-A1Z3-06 17 51900578 51900578 G T KIF2B Nonsense_Mutation p.E62* 0.41 TCGA-FS-A1Z3-06 17 51901311 51901311 G A KIF2B Missense_Mutation p.G306E 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 17 5462795 5462795 G A NLRP1 Silent p.F407F 0.43 TCGA-FS-A1Z3-06 17 5463109 5463109 A T NLRP1 Missense_Mutation p.Y303N 0.48 tolerated(0.54) benign(0) TCGA-FS-A1Z3-06 17 59112065 59112065 C T BCAS3 Missense_Mutation p.S574L 0.39 tolerated(0.1) probably_damaging(0.917) TCGA-FS-A1Z3-06 17 60484458 60484458 G A EFCAB3 Missense_Mutation p.G303E 0.46 deleterious(0.04) benign(0.397) TCGA-FS-A1Z3-06 17 62022171 62022171 C T SCN4A Splice_Site p.X1259_splice 0.50 TCGA-FS-A1Z3-06 17 62036697 62036697 G A SCN4A Silent p.I649I 0.53 TCGA-FS-A1Z3-06 17 6493866 6493866 G A KIAA0753 Missense_Mutation p.A842V 0.51 tolerated(0.09) benign(0.04) TCGA-FS-A1Z3-06 17 65907666 65907666 T G BPTF Missense_Mutation p.S1222R 0.42 possibly_damaging(0.568) TCGA-FS-A1Z3-06 17 67077236 67077236 A G ABCA6 Missense_Mutation p.L1556P 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 17 7106195 7106195 G A DLG4 Intron 0.51 TCGA-FS-A1Z3-06 17 71232316 71232316 C T C17orf80 Missense_Mutation p.P232L 0.30 deleterious(0) probably_damaging(0.994) TCGA-FS-A1Z3-06 17 71335036 71335036 G A SDK2 Missense_Mutation p.A2070V 0.36 tolerated(0.1) benign(0.219) TCGA-FS-A1Z3-06 17 7256761 7256761 C T KCTD11 Missense_Mutation p.P167L 0.40 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 17 72613293 72613293 C T CD300E Missense_Mutation p.D118N 0.30 tolerated(0.05) benign(0.312) TCGA-FS-A1Z3-06 17 73089822 73089822 C T SLC16A5 Missense_Mutation p.P31S 0.52 deleterious(0.02) probably_damaging(0.951) TCGA-FS-A1Z3-06 17 73659055 73659055 G A RECQL5 Missense_Mutation p.T92I 0.44 deleterious(0.02) benign(0.016) TCGA-FS-A1Z3-06 17 74004435 74004435 C T EVPL Silent p.S1617S 0.50 TCGA-FS-A1Z3-06 17 74077799 74077799 G A ZACN Silent p.Q281Q 0.45 TCGA-FS-A1Z3-06 17 74261619 74261619 G A UBALD2 Silent p.Q11Q 0.30 TCGA-FS-A1Z3-06 17 75212504 75212504 C T SEC14L1 Intron 0.28 TCGA-FS-A1Z3-06 17 76498990 76498990 C T DNAH17 Nonsense_Mutation p.W1683* 0.36 TCGA-FS-A1Z3-06 17 7707764 7707764 G A DNAH2 Missense_Mutation p.E3055K 0.43 probably_damaging(0.986) TCGA-FS-A1Z3-06 17 78092030 78092030 C T GAA Silent p.P840P 0.22 TCGA-FS-A1Z3-06 17 79207446 79207446 G A ENTHD2 Missense_Mutation p.P149L 0.44 deleterious(0.01) benign(0.019) TCGA-FS-A1Z3-06 17 79496291 79496291 G A FSCN2 Missense_Mutation p.R245Q 0.22 deleterious(0.05) possibly_damaging(0.763) TCGA-FS-A1Z3-06 17 79847154 79847154 G A ALYREF Missense_Mutation p.R148C 0.39 deleterious(0.01) benign(0.25) TCGA-FS-A1Z3-06 17 79892830 79892830 G A PYCR1 Missense_Mutation p.T171M 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1Z3-06 17 80788706 80788706 G A ZNF750 Missense_Mutation p.S495F 0.39 deleterious(0.01) benign(0.115) TCGA-FS-A1Z3-06 17 8141428 8141428 G A CTC1 Missense_Mutation p.P190S 0.47 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z3-06 18 13068955 13068955 G A CEP192 Missense_Mutation p.G1643R 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 18 13884922 13884922 A G MC2R Missense_Mutation p.L199P 0.44 deleterious(0) probably_damaging(0.976) TCGA-FS-A1Z3-06 18 20889667 20889667 G A TMEM241 Silent p.I269I 0.33 TCGA-FS-A1Z3-06 18 21136463 21136463 G A NPC1 Missense_Mutation p.S357L 0.43 deleterious(0.01) possibly_damaging(0.716) TCGA-FS-A1Z3-06 18 21399878 21399878 G A LAMA3 Missense_Mutation p.G741R 0.41 probably_damaging(0.966) TCGA-FS-A1Z3-06 18 21489216 21489216 G A LAMA3 Missense_Mutation p.R2372K 0.43 benign(0.302) TCGA-FS-A1Z3-06 18 22056887 22056887 A G HRH4 Silent p.T178T 0.42 TCGA-FS-A1Z3-06 18 28672216 28672216 C T DSC2 Missense_Mutation p.D68N 0.30 tolerated(0.07) probably_damaging(1) TCGA-FS-A1Z3-06 18 28725590 28725590 G A DSC1 Missense_Mutation p.P308L 0.33 tolerated(0.56) benign(0.038) TCGA-FS-A1Z3-06 18 28966653 28966653 G A DSG4 Silent p.V29V 0.55 TCGA-FS-A1Z3-06 18 29054225 29054225 G A DSG3 Missense_Mutation p.G748E 0.44 tolerated(0.11) possibly_damaging(0.797) TCGA-FS-A1Z3-06 18 29056140 29056140 C T DSG3 Missense_Mutation p.P973S 0.44 tolerated(0.43) benign(0.004) TCGA-FS-A1Z3-06 18 29102103 29102103 C T DSG2 Missense_Mutation p.S194L 0.34 deleterious(0) probably_damaging(0.943) TCGA-FS-A1Z3-06 18 29339698 29339698 G A SLC25A52 3'UTR 0.45 TCGA-FS-A1Z3-06 18 31319118 31319118 C T ASXL3 Missense_Mutation p.P584S 0.50 benign(0.026) TCGA-FS-A1Z3-06 18 31325730 31325730 G A ASXL3 Missense_Mutation p.G1973E 0.42 possibly_damaging(0.827) TCGA-FS-A1Z3-06 18 31326539 31326539 G T ASXL3 Missense_Mutation p.A2243S 0.34 probably_damaging(0.999) TCGA-FS-A1Z3-06 18 31326540 31326540 C T ASXL3 Missense_Mutation p.A2243V 0.34 probably_damaging(0.999) TCGA-FS-A1Z3-06 18 33558943 33558943 T C C18orf21 Missense_Mutation p.S213P 0.45 deleterious(0.02) probably_damaging(0.982) TCGA-FS-A1Z3-06 18 44549261 44549261 C T TCEB3CL Silent p.R346R 0.12 TCGA-FS-A1Z3-06 18 47369720 47369720 G A MYO5B Missense_Mutation p.P1501L 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 18 51820450 51820450 T C POLI Silent p.S612S 0.45 TCGA-FS-A1Z3-06 18 51851242 51851242 G A STARD6 Silent p.N161N 0.44 TCGA-FS-A1Z3-06 18 52556605 52556605 G A RAB27B Silent p.L206L 0.36 TCGA-FS-A1Z3-06 18 52586522 52586522 G A CCDC68 Silent p.L257L 0.37 TCGA-FS-A1Z3-06 18 52901899 52901899 C T TCF4 Missense_Mutation p.E558K 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-FS-A1Z3-06 18 52921820 52921820 C T TCF4 Missense_Mutation p.G522R 0.38 deleterious(0) possibly_damaging(0.86) TCGA-FS-A1Z3-06 18 55020174 55020174 C T ST8SIA3 Silent p.L33L 0.54 TCGA-FS-A1Z3-06 18 55024487 55024487 G A ST8SIA3 Missense_Mutation p.E216K 0.35 possibly_damaging(0.831) TCGA-FS-A1Z3-06 18 56202905 56202905 G A ALPK2 Missense_Mutation p.P1505L 0.28 deleterious(0.03) probably_damaging(0.962) TCGA-FS-A1Z3-06 18 56204774 56204774 C T ALPK2 Missense_Mutation p.G882D 0.40 tolerated(0.38) benign(0.221) TCGA-FS-A1Z3-06 18 61018276 61018276 G A KDSR Missense_Mutation p.P152S 0.38 tolerated(0.09) benign(0.41) TCGA-FS-A1Z3-06 18 61260157 61260157 G A SERPINB13 Missense_Mutation p.D142N 0.38 deleterious(0) probably_damaging(0.97) TCGA-FS-A1Z3-06 18 61305175 61305175 C T SERPINB4 Missense_Mutation p.M317I 0.41 tolerated(0.2) benign(0.271) TCGA-FS-A1Z3-06 18 65180610 65180610 G A DSEL Silent p.F422F 0.33 TCGA-FS-A1Z3-06 18 72186193 72186193 T C CNDP2 Missense_Mutation p.V407A 0.38 deleterious(0.03) benign(0.159) TCGA-FS-A1Z3-06 18 74091512 74091512 G A ZNF516 Missense_Mutation p.P853L 0.47 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 18 9887844 9887844 G A TXNDC2 Silent p.K456K 0.50 TCGA-FS-A1Z3-06 19 11998685 11998685 C T ZNF69 5'UTR 0.24 TCGA-FS-A1Z3-06 19 1440453 1440453 C T RPS15 Missense_Mutation p.L144F 0.90 deleterious(0.02) benign(0.299) TCGA-FS-A1Z3-06 19 15284925 15284925 C A NOTCH3 Missense_Mutation p.G1564C 0.09 deleterious(0.02) possibly_damaging(0.522) TCGA-FS-A1Z3-06 19 15838913 15838913 C T OR10H2 Silent p.F20F 0.87 TCGA-FS-A1Z3-06 19 16590074 16590074 C T CALR3 Silent p.R341R 0.26 TCGA-FS-A1Z3-06 19 17735637 17735637 C T UNC13A Splice_Site p.X1399_splice 0.88 TCGA-FS-A1Z3-06 19 17837396 17837396 C T MAP1S Silent p.P401P 0.20 TCGA-FS-A1Z3-06 19 1785534 1785534 G A ATP8B3 Silent p.S1109S 0.88 TCGA-FS-A1Z3-06 19 18255881 18255881 C T MAST3 Missense_Mutation p.R932C 0.22 deleterious(0) probably_damaging(0.964) TCGA-FS-A1Z3-06 19 20215083 20215083 C T ZNF90 Silent p.F13F 0.84 TCGA-FS-A1Z3-06 19 20807057 20807057 C T ZNF626 3'UTR 0.16 TCGA-FS-A1Z3-06 19 2216581 2216581 C A DOT1L Missense_Mutation p.P742H 0.30 tolerated_low_confidence(0.33) probably_damaging(0.998) TCGA-FS-A1Z3-06 19 22271909 22271909 C T ZNF257 Missense_Mutation p.H453Y 0.84 deleterious(0.03) probably_damaging(0.994) TCGA-FS-A1Z3-06 19 22364321 22364321 C T ZNF676 Missense_Mutation p.M66I 0.90 tolerated(0.1) benign(0.001) TCGA-FS-A1Z3-06 19 22939406 22939406 C T ZNF99 3'Flank 0.88 TCGA-FS-A1Z3-06 19 31770312 31770312 G A TSHZ3 Silent p.S129S 0.19 TCGA-FS-A1Z3-06 19 34833066 34833066 C T KIAA0355 Missense_Mutation p.P743S 0.24 tolerated_low_confidence(0.35) benign(0.004) TCGA-FS-A1Z3-06 19 35258237 35258237 G A ZNF599 Silent p.S75S 0.89 TCGA-FS-A1Z3-06 19 35449231 35449231 C T ZNF792 Missense_Mutation p.E510K 0.89 tolerated(0.06) possibly_damaging(0.664) TCGA-FS-A1Z3-06 19 39025973 39025973 T A RYR1 Silent p.L3819L 0.23 TCGA-FS-A1Z3-06 19 3905638 3905638 G A ATCAY Missense_Mutation p.E115K 0.29 deleterious(0.05) benign(0.004) TCGA-FS-A1Z3-06 19 3910877 3910877 C T ATCAY Missense_Mutation p.P286S 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 19 39322421 39322421 C T ECH1 5'UTR 0.86 TCGA-FS-A1Z3-06 19 39322422 39322422 C T ECH1 5'UTR 0.86 TCGA-FS-A1Z3-06 19 40433602 40433602 G A FCGBP Missense_Mutation p.L223F 0.84 benign(0.023) TCGA-FS-A1Z3-06 19 40578124 40578124 G A ZNF780A 3'Flank 0.86 TCGA-FS-A1Z3-06 19 40732323 40732323 C T CNTD2 Missense_Mutation p.G76R 0.18 tolerated(0.35) benign(0.089) TCGA-FS-A1Z3-06 19 41599627 41599627 C T CYP2A13 Silent p.T308T 0.89 TCGA-FS-A1Z3-06 19 42848976 42848976 G A MEGF8 Silent p.Q696Q 0.89 TCGA-FS-A1Z3-06 19 43690641 43690641 C T PSG5 5'UTR 0.34 TCGA-FS-A1Z3-06 19 43699348 43699348 C T PSG4 Missense_Mutation p.E263K 0.32 tolerated(0.29) possibly_damaging(0.621) TCGA-FS-A1Z3-06 19 44503323 44503323 T C ZNF155 3'Flank 0.31 TCGA-FS-A1Z3-06 19 44503324 44503324 T A ZNF155 3'Flank 0.32 TCGA-FS-A1Z3-06 19 44604989 44604989 C T ZNF224 Silent p.F17F 0.25 TCGA-FS-A1Z3-06 19 45322740 45322740 C T BCAM Silent p.F537F 0.88 TCGA-FS-A1Z3-06 19 45419533 45419533 C T APOC1 Missense_Mutation p.R49W 0.87 deleterious(0.02) benign(0.001) TCGA-FS-A1Z3-06 19 45489794 45489794 C T CLPTM1 Missense_Mutation p.P252S 0.86 tolerated(0.17) benign(0.042) TCGA-FS-A1Z3-06 19 46275981 46275981 A T DMPK Missense_Mutation p.M431K 0.34 tolerated(0.09) benign(0.254) TCGA-FS-A1Z3-06 19 46280657 46280657 G A DMPK Silent p.F368F 0.90 TCGA-FS-A1Z3-06 19 46825094 46825094 G A HIF3A Silent p.L402L 0.95 TCGA-FS-A1Z3-06 19 49132047 49132047 C T SPHK2 Missense_Mutation p.R328C 0.91 deleterious(0) possibly_damaging(0.902) TCGA-FS-A1Z3-06 19 49464068 49464068 C T BAX Missense_Mutation p.A124V 0.89 tolerated(0.23) possibly_damaging(0.895) TCGA-FS-A1Z3-06 19 50191572 50191572 C T PRMT1 3'UTR 0.90 TCGA-FS-A1Z3-06 19 50209290 50209290 G A CPT1C Silent p.Q363Q 0.89 TCGA-FS-A1Z3-06 19 5082414 5082414 C T KDM4B Missense_Mutation p.P273S 0.84 probably_damaging(0.983) TCGA-FS-A1Z3-06 19 51645698 51645698 G A SIGLEC7 Silent p.K24K 0.11 TCGA-FS-A1Z3-06 19 51645699 51645699 G A SIGLEC7 Missense_Mutation p.D25N 0.11 tolerated(0.38) benign(0.002) TCGA-FS-A1Z3-06 19 52249272 52249272 C T FPR1 Missense_Mutation p.E326K 0.90 deleterious(0) probably_damaging(0.98) TCGA-FS-A1Z3-06 19 53669202 53669202 C T ZNF665 Missense_Mutation p.D181N 0.29 tolerated(1) benign(0.003) TCGA-FS-A1Z3-06 19 54244631 54244631 T A MIR517C RNA 0.29 TCGA-FS-A1Z3-06 19 54392969 54392969 C T PRKCG Silent p.L121L 0.92 TCGA-FS-A1Z3-06 19 54849322 54849322 G A LILRA4 Silent p.F180F 0.42 TCGA-FS-A1Z3-06 19 55144654 55144654 C T LILRB1 Silent p.F382F 0.26 TCGA-FS-A1Z3-06 19 55264053 55264053 C - KIR2DL3 3'UTR 0.46 TCGA-FS-A1Z3-06 19 55297959 55297959 G A KIR2DL1 3'Flank 0.94 TCGA-FS-A1Z3-06 19 55349152 55349152 G A KIR2DS4 Silent p.G64G 0.90 TCGA-FS-A1Z3-06 19 56473545 56473545 T G NLRP8 Missense_Mutation p.F719V 0.37 tolerated(0.81) benign(0.127) TCGA-FS-A1Z3-06 19 56573002 56573002 G A NLRP5 3'UTR 0.25 TCGA-FS-A1Z3-06 19 57640197 57640197 C T USP29 Nonsense_Mutation p.Q52* 0.91 TCGA-FS-A1Z3-06 19 58490579 58490579 C T ZNF606 Missense_Mutation p.G490E 0.22 tolerated(0.06) probably_damaging(1) TCGA-FS-A1Z3-06 19 58491146 58491146 A G ZNF606 Missense_Mutation p.I301T 0.94 tolerated(0.76) benign(0.02) TCGA-FS-A1Z3-06 19 58565085 58565085 G A ZSCAN1 Missense_Mutation p.G298E 0.91 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 19 59080695 59080695 C A MZF1 Nonsense_Mutation p.E241* 0.33 TCGA-FS-A1Z3-06 19 9064536 9064536 T - MUC16 Frame_Shift_Del p.N7637Ifs*2 0.50 TCGA-FS-A1Z3-06 19 9065405 9065405 G A MUC16 Silent p.T7347T 0.86 TCGA-FS-A1Z3-06 19 9066554 9066554 A T MUC16 Missense_Mutation p.F6964L 0.93 unknown(0) TCGA-FS-A1Z3-06 19 9074082 9074082 G A MUC16 Missense_Mutation p.S4455F 0.88 unknown(0) TCGA-FS-A1Z3-06 19 9406189 9406189 G A ZNF699 Nonsense_Mutation p.R631* 0.36 TCGA-FS-A1Z3-06 1 100350249 100350249 C T AGL Missense_Mutation p.P891S 0.90 tolerated(0.21) benign(0.007) TCGA-FS-A1Z3-06 1 101196957 101196957 T C VCAM1 Missense_Mutation p.F470L 0.40 tolerated(0.11) benign(0.34) TCGA-FS-A1Z3-06 1 103377722 103377722 C T COL11A1 Missense_Mutation p.G1360E 0.68 unknown(0) TCGA-FS-A1Z3-06 1 104234232 104234232 C T AMY1B Silent p.K293K 0.21 TCGA-FS-A1Z3-06 1 109883350 109883350 G A SORT1 Silent p.S420S 0.44 TCGA-FS-A1Z3-06 1 11094906 11094906 G A MASP2 Missense_Mutation p.R356W 0.38 deleterious(0.01) possibly_damaging(0.742) TCGA-FS-A1Z3-06 1 111145957 111145957 G A KCNA2 Missense_Mutation p.T483I 0.84 tolerated_low_confidence(0.21) benign(0.079) TCGA-FS-A1Z3-06 1 114320371 114320371 G A RSBN1 Silent p.L479L 0.89 TCGA-FS-A1Z3-06 1 114438328 114438328 G A AP4B1 Intron 0.36 TCGA-FS-A1Z3-06 1 115256528 115256528 T A NRAS Missense_Mutation p.Q61H 0.91 deleterious(0) possibly_damaging(0.531) TCGA-FS-A1Z3-06 1 117554315 117554315 G A CD101 Missense_Mutation p.G190R 0.36 tolerated(0.21) benign(0.429) TCGA-FS-A1Z3-06 1 119469224 119469224 G A TBX15 Missense_Mutation p.P38S 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 1 12815710 12815710 C T C1orf158 Missense_Mutation p.P58S 0.56 tolerated(0.1) benign(0.349) TCGA-FS-A1Z3-06 1 143767794 143767794 G A PPIAL4G Missense_Mutation p.R19C 0.46 tolerated_low_confidence(0.26) benign(0.001) TCGA-FS-A1Z3-06 1 151131694 151131694 G A TNFAIP8L2 Missense_Mutation p.G174E 0.57 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 1 151384264 151384264 G A POGZ Intron 0.20 TCGA-FS-A1Z3-06 1 151826074 151826074 G A THEM5 5'UTR 0.17 TCGA-FS-A1Z3-06 1 152127657 152127657 C T RPTN Missense_Mutation p.D640N 0.29 deleterious(0.05) benign(0.093) TCGA-FS-A1Z3-06 1 152127941 152127941 G A RPTN Missense_Mutation p.S545F 0.58 tolerated(0.06) possibly_damaging(0.464) TCGA-FS-A1Z3-06 1 152323642 152323642 C T FLG2 Missense_Mutation p.R2207Q 0.61 benign(0.055) TCGA-FS-A1Z3-06 1 152748899 152748899 C T LCE1F Missense_Mutation p.P18S 0.56 tolerated_low_confidence(0.18) unknown(0) TCGA-FS-A1Z3-06 1 153276351 153276351 G A PGLYRP3 Missense_Mutation p.P171S 0.58 tolerated(0.6) benign(0.034) TCGA-FS-A1Z3-06 1 153347040 153347040 C T S100A12 Missense_Mutation p.G10E 0.29 tolerated(1) benign(0.414) TCGA-FS-A1Z3-06 1 15386768 15386768 C T KAZN Silent p.S339S 0.41 TCGA-FS-A1Z3-06 1 153963248 153963248 G A RPS27 5'UTR 0.28 TCGA-FS-A1Z3-06 1 154229842 154229842 C T UBAP2L Missense_Mutation p.P792S 0.52 tolerated(0.05) unknown(0) TCGA-FS-A1Z3-06 1 155014062 155014062 G A DCST1 Missense_Mutation p.E241K 0.56 deleterious(0.04) possibly_damaging(0.52) TCGA-FS-A1Z3-06 1 156504511 156504511 G A IQGAP3 Silent p.L1174L 0.22 TCGA-FS-A1Z3-06 1 156694030 156694030 G A ISG20L2 Silent p.I286I 0.26 TCGA-FS-A1Z3-06 1 156927605 156927605 G A ARHGEF11 Missense_Mutation p.S502F 0.61 deleterious(0.01) benign(0.039) TCGA-FS-A1Z3-06 1 157514230 157514230 G A FCRL5 Silent p.V222V 0.34 TCGA-FS-A1Z3-06 1 157773723 157773723 C T FCRL1 Nonsense_Mutation p.W77* 0.54 TCGA-FS-A1Z3-06 1 158226687 158226687 G A CD1A Missense_Mutation p.R239Q 0.24 tolerated(0.11) benign(0.02) TCGA-FS-A1Z3-06 1 158324383 158324383 A G CD1E Missense_Mutation p.N92S 0.31 tolerated(0.1) benign(0.01) TCGA-FS-A1Z3-06 1 158390626 158390626 C T OR10K2 Missense_Mutation p.E11K 0.66 deleterious(0.04) possibly_damaging(0.529) TCGA-FS-A1Z3-06 1 158436048 158436048 G A OR10K1 Missense_Mutation p.G233R 0.59 deleterious(0.01) probably_damaging(0.928) TCGA-FS-A1Z3-06 1 158436122 158436122 C T OR10K1 Silent p.F257F 0.60 TCGA-FS-A1Z3-06 1 158517122 158517122 G A OR6Y1 Silent p.S258S 0.27 TCGA-FS-A1Z3-06 1 158617356 158617356 T A SPTA1 Missense_Mutation p.K1290I 0.58 deleterious(0.03) probably_damaging(0.977) TCGA-FS-A1Z3-06 1 158736179 158736179 G A OR6N1 Silent p.L98L 0.22 TCGA-FS-A1Z3-06 1 159557917 159557917 C T APCS Missense_Mutation p.P31S 0.52 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z3-06 1 160832470 160832470 C T CD244 5'UTR 0.22 TCGA-FS-A1Z3-06 1 161130677 161130677 C T USP21 Nonsense_Mutation p.R83* 0.53 TCGA-FS-A1Z3-06 1 164789402 164789402 G A PBX1 Missense_Mutation p.G364E 0.52 deleterious(0.03) benign(0.341) TCGA-FS-A1Z3-06 1 165218761 165218761 C T LMX1A Missense_Mutation p.R127Q 0.28 tolerated(0.18) probably_damaging(0.971) TCGA-FS-A1Z3-06 1 167654684 167654684 G A RCSD1 Silent p.R45R 0.27 TCGA-FS-A1Z3-06 1 171310953 171310953 A T FMO4 Missense_Mutation p.Y551F 0.34 tolerated_low_confidence(0.31) benign(0.003) TCGA-FS-A1Z3-06 1 171765924 171765924 T C METTL13 3'UTR 0.53 TCGA-FS-A1Z3-06 1 173523928 173523928 G A SLC9C2 Missense_Mutation p.S414L 0.27 tolerated(0.15) probably_damaging(0.981) TCGA-FS-A1Z3-06 1 176525995 176525995 C T PAPPA2 Silent p.T179T 0.54 TCGA-FS-A1Z3-06 1 176668454 176668454 G A PAPPA2 Missense_Mutation p.E989K 0.26 tolerated(0.31) possibly_damaging(0.576) TCGA-FS-A1Z3-06 1 176668455 176668455 A C PAPPA2 Missense_Mutation p.E989A 0.26 tolerated(0.34) benign(0.341) TCGA-FS-A1Z3-06 1 176668661 176668661 G A PAPPA2 Missense_Mutation p.D1058N 0.29 tolerated(0.1) benign(0.167) TCGA-FS-A1Z3-06 1 177249819 177249819 C T BRINP2 Missense_Mutation p.L503F 0.54 deleterious(0.02) possibly_damaging(0.809) TCGA-FS-A1Z3-06 1 179414258 179414258 G A AXDND1 Missense_Mutation p.E573K 0.49 deleterious(0.01) possibly_damaging(0.636) TCGA-FS-A1Z3-06 1 17983152 17983152 C T ARHGEF10L Silent p.L937L 0.38 TCGA-FS-A1Z3-06 1 181724526 181724526 G A CACNA1E Missense_Mutation p.E1328K 0.31 deleterious(0.01) benign(0.193) TCGA-FS-A1Z3-06 1 181767591 181767591 G A CACNA1E Missense_Mutation p.G2188E 0.32 tolerated(0.23) benign(0.205) TCGA-FS-A1Z3-06 1 181767819 181767819 A G CACNA1E Missense_Mutation p.N2264S 0.48 tolerated(1) possibly_damaging(0.678) TCGA-FS-A1Z3-06 1 186332546 186332546 T C TPR Silent p.K153K 0.60 TCGA-FS-A1Z3-06 1 18807831 18807831 G A KLHDC7A Missense_Mutation p.R119K 0.52 tolerated(0.15) benign(0.005) TCGA-FS-A1Z3-06 1 193045023 193045023 C T TROVE2 Silent p.L218L 0.24 TCGA-FS-A1Z3-06 1 196311220 196311220 A G KCNT2 Silent p.H514H 0.61 TCGA-FS-A1Z3-06 1 196395036 196395036 C T KCNT2 Missense_Mutation p.R356Q 0.61 deleterious(0) probably_damaging(0.99) TCGA-FS-A1Z3-06 1 196646674 196646674 C T CFH Missense_Mutation p.R166W 0.55 deleterious(0) probably_damaging(0.957) TCGA-FS-A1Z3-06 1 196964873 196964873 C T CFHR5 Missense_Mutation p.P212S 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 1 196964900 196964900 G A CFHR5 Missense_Mutation p.E221K 0.61 tolerated(0.47) benign(0.008) TCGA-FS-A1Z3-06 1 197008439 197008439 C A F13B 3'UTR 0.55 TCGA-FS-A1Z3-06 1 201334340 201334340 G A TNNT2 Silent p.L120L 0.36 TCGA-FS-A1Z3-06 1 202533586 202533586 C T PPP1R12B Silent p.L890L 0.23 TCGA-FS-A1Z3-06 1 202911291 202911291 G A ADIPOR1 Silent p.I287I 0.33 TCGA-FS-A1Z3-06 1 205065991 205065991 G A RBBP5 Silent p.A405A 0.23 TCGA-FS-A1Z3-06 1 207135711 207135711 G A FCAMR Missense_Mutation p.R167C 0.28 tolerated(0.06) benign(0.052) TCGA-FS-A1Z3-06 1 207643267 207643267 G A CR2 Missense_Mutation p.V349I 0.58 tolerated(0.43) benign(0.105) TCGA-FS-A1Z3-06 1 207697044 207697044 C T CR1 Silent p.T192T 0.24 TCGA-FS-A1Z3-06 1 207890860 207890860 C T CR1L Missense_Mutation p.T489I 0.31 tolerated(0.24) benign(0.052) TCGA-FS-A1Z3-06 1 21031117 21031117 C T KIF17 Missense_Mutation p.D316N 0.79 deleterious(0.01) benign(0.443) TCGA-FS-A1Z3-06 1 210414989 210414989 C T SERTAD4 Silent p.L126L 0.31 TCGA-FS-A1Z3-06 1 211652529 211652529 G A RD3 Missense_Mutation p.P146L 0.18 tolerated(0.52) benign(0.23) TCGA-FS-A1Z3-06 1 214549624 214549624 G A PTPN14 Nonsense_Mutation p.R949* 0.66 TCGA-FS-A1Z3-06 1 214706260 214706260 G A PTPN14 Intron 0.47 TCGA-FS-A1Z3-06 1 215368397 215368397 G T KCNK2 Missense_Mutation p.D309Y 0.61 deleterious(0.03) benign(0.186) TCGA-FS-A1Z3-06 1 21562382 21562382 G A ECE1 Silent p.F509F 0.83 TCGA-FS-A1Z3-06 1 215808020 215808020 T A USH2A Missense_Mutation p.K5026N 0.66 benign(0.002) TCGA-FS-A1Z3-06 1 215960037 215960037 C T USH2A Silent p.G3454G 0.52 TCGA-FS-A1Z3-06 1 21896825 21896825 G A ALPL Missense_Mutation p.E274K 0.40 deleterious(0.03) benign(0.008) TCGA-FS-A1Z3-06 1 220375673 220375673 A G RAB3GAP2 Silent p.A252A 0.49 TCGA-FS-A1Z3-06 1 223178203 223178203 C T DISP1 Missense_Mutation p.S1155F 0.60 deleterious(0.01) possibly_damaging(0.555) TCGA-FS-A1Z3-06 1 223179328 223179328 C T DISP1 3'UTR 0.62 TCGA-FS-A1Z3-06 1 223283800 223283800 G A TLR5 Silent p.S858S 0.49 TCGA-FS-A1Z3-06 1 223284895 223284895 G A TLR5 Silent p.L493L 0.62 TCGA-FS-A1Z3-06 1 22816548 22816548 G A ZBTB40 Missense_Mutation p.R36K 0.88 tolerated(0.05) possibly_damaging(0.637) TCGA-FS-A1Z3-06 1 229631307 229631307 A C NUP133 Silent p.S327S 0.26 TCGA-FS-A1Z3-06 1 235955367 235955367 G T LYST Nonsense_Mutation p.S1392* 0.39 TCGA-FS-A1Z3-06 1 236721628 236721628 T A HEATR1 Nonsense_Mutation p.K1705* 0.25 TCGA-FS-A1Z3-06 1 237604755 237604755 C T RYR2 Missense_Mutation p.S381F 0.56 possibly_damaging(0.828) TCGA-FS-A1Z3-06 1 240969596 240969596 C T RGS7 Silent p.K371K 0.23 TCGA-FS-A1Z3-06 1 24175137 24175137 A C FUCA1 Splice_Site p.X387_splice 0.89 TCGA-FS-A1Z3-06 1 247319908 247319909 - T ZNF124 Frame_Shift_Ins p.T277Nfs*9 0.52 TCGA-FS-A1Z3-06 1 247712378 247712378 G A GCSAML 5'Flank 0.47 TCGA-FS-A1Z3-06 1 247978897 247978897 C T OR14A16 Missense_Mutation p.M45I 0.28 tolerated(0.37) benign(0) TCGA-FS-A1Z3-06 1 248039759 248039759 C T TRIM58 Missense_Mutation p.P477S 0.57 tolerated_low_confidence(0.73) benign(0.001) TCGA-FS-A1Z3-06 1 33945142 33945142 C T ZSCAN20 Missense_Mutation p.R85C 0.90 tolerated(0.11) probably_damaging(0.937) TCGA-FS-A1Z3-06 1 34164509 34164509 G A CSMD2 Missense_Mutation p.P1217S 0.43 deleterious(0.02) probably_damaging(0.981) TCGA-FS-A1Z3-06 1 35370292 35370292 G A DLGAP3 Silent p.H231H 0.42 TCGA-FS-A1Z3-06 1 35579758 35579758 A G ZMYM1 Missense_Mutation p.N776S 0.89 tolerated(0.33) benign(0.026) TCGA-FS-A1Z3-06 1 38283093 38283093 G A MTF1 Missense_Mutation p.P610L 0.84 tolerated(0.11) benign(0.002) TCGA-FS-A1Z3-06 1 39788337 39788337 C T MACF1 Missense_Mutation p.P1368S 0.43 possibly_damaging(0.455) TCGA-FS-A1Z3-06 1 39801114 39801114 G A MACF1 Intron 0.89 TCGA-FS-A1Z3-06 1 39908455 39908455 C A MACF1 Missense_Mutation p.L4333I 0.40 probably_damaging(0.944) TCGA-FS-A1Z3-06 1 40420974 40420974 G A MFSD2A Missense_Mutation p.G4R 0.67 deleterious(0) unknown(0) TCGA-FS-A1Z3-06 1 43119114 43119114 G A CCDC30 Missense_Mutation p.S714N 0.29 tolerated(0.07) possibly_damaging(0.9) TCGA-FS-A1Z3-06 1 47279172 47279172 G A CYP4B1 Missense_Mutation p.A172T 0.40 tolerated(0.49) benign(0.069) TCGA-FS-A1Z3-06 1 47571800 47571800 G A CYP4Z1 Nonsense_Mutation p.W356* 0.38 TCGA-FS-A1Z3-06 1 47571801 47571801 G A CYP4Z1 Missense_Mutation p.E357K 0.38 deleterious(0.01) benign(0.043) TCGA-FS-A1Z3-06 1 57415351 57415351 T G C8B Missense_Mutation p.K247N 0.55 tolerated(0.32) benign(0.005) TCGA-FS-A1Z3-06 1 59042193 59042193 C T TACSTD2 Silent p.K212K 0.44 TCGA-FS-A1Z3-06 1 59147987 59147987 A G MYSM1 Silent p.S243S 0.87 TCGA-FS-A1Z3-06 1 5925288 5925288 G A NPHP4 Silent p.L1230L 1.00 TCGA-FS-A1Z3-06 1 6188922 6188922 C T CHD5 Missense_Mutation p.E1199K 0.45 deleterious(0) possibly_damaging(0.885) TCGA-FS-A1Z3-06 1 66102286 66102286 G A LEPR Nonsense_Mutation p.W1029* 0.45 TCGA-FS-A1Z3-06 1 75037295 75037295 C T C1orf173 Missense_Mutation p.E1367K 0.79 tolerated(0.07) possibly_damaging(0.903) TCGA-FS-A1Z3-06 1 75184934 75184934 G A CRYZ Silent p.I129I 0.88 TCGA-FS-A1Z3-06 1 75862300 75862300 G A SLC44A5 Missense_Mutation p.P7L 0.88 tolerated(0.09) benign(0.001) TCGA-FS-A1Z3-06 1 76344712 76344712 C T MSH4 Missense_Mutation p.P526S 0.89 deleterious(0.04) possibly_damaging(0.457) TCGA-FS-A1Z3-06 1 78601371 78601371 G A GIPC2 Missense_Mutation p.E298K 0.37 deleterious(0) probably_damaging(0.97) TCGA-FS-A1Z3-06 1 79093950 79093950 C T IFI44L Missense_Mutation p.S117L 0.84 tolerated(0.69) benign(0.004) TCGA-FS-A1Z3-06 1 7995160 7995160 C T TNFRSF9 Missense_Mutation p.E153K 0.47 tolerated(0.27) benign(0.003) TCGA-FS-A1Z3-06 1 82437561 82437561 T A LPHN2 Missense_Mutation p.F977I 0.35 deleterious(0) probably_damaging(0.948) TCGA-FS-A1Z3-06 1 86524851 86524851 G A COL24A1 Missense_Mutation p.P587S 0.45 tolerated(0.06) probably_damaging(0.963) TCGA-FS-A1Z3-06 1 94520757 94520757 C T ABCA4 Missense_Mutation p.E833K 0.86 tolerated(0.85) benign(0.311) TCGA-FS-A1Z3-06 20 13850827 13850827 C T SEL1L2 Missense_Mutation p.G376E 0.29 deleterious(0) probably_damaging(0.994) TCGA-FS-A1Z3-06 20 15967437 15967437 G A MACROD2 Missense_Mutation p.E351K 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 20 1617024 1617024 C T SIRPG Silent p.G186G 0.31 TCGA-FS-A1Z3-06 20 20527471 20527471 G A RALGAPA2 Silent p.I1054I 0.44 TCGA-FS-A1Z3-06 20 23017262 23017262 C T SSTR4 Missense_Mutation p.P381L 0.43 tolerated_low_confidence(0.78) benign(0.001) TCGA-FS-A1Z3-06 20 23584308 23584308 C T CST9 Missense_Mutation p.E107K 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1Z3-06 20 26084304 26084304 G A NCOR1P1 RNA 0.16 TCGA-FS-A1Z3-06 20 2840755 2840755 C T VPS16 Silent p.L66L 0.40 TCGA-FS-A1Z3-06 20 29976813 29976813 G A DEFB119 3'UTR 0.47 TCGA-FS-A1Z3-06 20 30065650 30065650 C T REM1 Silent p.T120T 0.46 TCGA-FS-A1Z3-06 20 30585011 30585011 C T XKR7 Silent p.T497T 0.39 TCGA-FS-A1Z3-06 20 30784309 30784309 G A PLAGL2 Silent p.F479F 0.42 TCGA-FS-A1Z3-06 20 30784649 30784649 A T PLAGL2 Missense_Mutation p.L366H 0.40 deleterious(0) possibly_damaging(0.575) TCGA-FS-A1Z3-06 20 31395728 31395728 C T DNMT3B 3'UTR 0.45 TCGA-FS-A1Z3-06 20 34611587 34611587 C T CNBD2 Silent p.L441L 0.42 TCGA-FS-A1Z3-06 20 35262025 35262025 C T SLA2 Missense_Mutation p.D67N 0.46 tolerated(0.08) possibly_damaging(0.811) TCGA-FS-A1Z3-06 20 35783561 35783561 G A MROH8 Missense_Mutation p.P354S 0.43 deleterious(0.02) benign(0.386) TCGA-FS-A1Z3-06 20 3686517 3686517 T C SIGLEC1 Missense_Mutation p.T194A 0.30 tolerated(0.21) benign(0.204) TCGA-FS-A1Z3-06 20 411013 411013 G A RBCK1 Missense_Mutation p.G491E 0.33 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z3-06 20 42331266 42331266 C T MYBL2 Missense_Mutation p.A363V 0.45 tolerated(0.27) benign(0.001) TCGA-FS-A1Z3-06 20 44751838 44751838 A T CD40 Missense_Mutation p.E159D 0.45 tolerated(0.07) benign(0.162) TCGA-FS-A1Z3-06 20 47866189 47866189 C T ZNFX1 Silent p.E1124E 0.44 TCGA-FS-A1Z3-06 20 47990681 47990681 C T KCNB1 Missense_Mutation p.M472I 0.41 tolerated(0.41) benign(0) TCGA-FS-A1Z3-06 20 49212700 49212700 G A FAM65C Nonsense_Mutation p.Q627* 0.43 TCGA-FS-A1Z3-06 20 5283051 5283051 G A PROKR2 Missense_Mutation p.R264C 0.45 deleterious(0) possibly_damaging(0.719) TCGA-FS-A1Z3-06 20 5556488 5556488 G A GPCPD1 Missense_Mutation p.S281F 0.38 tolerated(0.05) possibly_damaging(0.838) TCGA-FS-A1Z3-06 20 56089711 56089711 C T CTCFL Missense_Mutation p.E423K 0.41 deleterious(0.04) benign(0.234) TCGA-FS-A1Z3-06 20 56191374 56191374 G A ZBP1 Missense_Mutation p.S62F 0.31 deleterious(0.01) benign(0.009) TCGA-FS-A1Z3-06 20 5927167 5927167 G A TRMT6 Silent p.F47F 0.24 TCGA-FS-A1Z3-06 20 60986024 60986024 C T RBBP8NL Silent p.R635R 0.30 TCGA-FS-A1Z3-06 20 60989037 60989037 T G RBBP8NL Missense_Mutation p.K457T 0.33 deleterious(0) possibly_damaging(0.559) TCGA-FS-A1Z3-06 20 60989205 60989205 C T RBBP8NL Missense_Mutation p.G401E 0.43 tolerated(0.27) benign(0.201) TCGA-FS-A1Z3-06 20 61834435 61834435 G A YTHDF1 Missense_Mutation p.P286L 0.46 tolerated(0.19) benign(0.091) TCGA-FS-A1Z3-06 20 62190680 62190680 G A HELZ2 Silent p.L2623L 0.36 TCGA-FS-A1Z3-06 20 62197147 62197147 G A HELZ2 Missense_Mutation p.R1010C 0.27 deleterious(0.02) benign(0.2) TCGA-FS-A1Z3-06 20 896668 896668 C T ANGPT4 Missense_Mutation p.D64N 0.45 tolerated(0.56) benign(0.07) TCGA-FS-A1Z3-06 20 9520219 9520219 C T PAK7 Missense_Mutation p.E684K 0.41 deleterious(0) probably_damaging(0.994) TCGA-FS-A1Z3-06 21 10916446 10916446 C T TPTE Silent p.V400V 0.17 TCGA-FS-A1Z3-06 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.26 deleterious(0.01) benign(0.021) TCGA-FS-A1Z3-06 21 11039382 11039382 C T BAGE2 RNA 0.07 TCGA-FS-A1Z3-06 21 15746247 15746247 G A HSPA13 Silent p.L369L 0.39 TCGA-FS-A1Z3-06 21 17911434 17911434 G A MIR99A RNA 0.44 TCGA-FS-A1Z3-06 21 18938045 18938045 C T CXADR 3'UTR 0.52 TCGA-FS-A1Z3-06 21 37597932 37597932 C T DOPEY2 Silent p.A480A 0.44 TCGA-FS-A1Z3-06 21 37617564 37617564 C T DOPEY2 Missense_Mutation p.P1096S 0.56 tolerated(0.32) benign(0.028) TCGA-FS-A1Z3-06 21 38568323 38568323 C T TTC3 Silent p.F1855F 0.42 TCGA-FS-A1Z3-06 21 39086559 39086559 C T KCNJ6 Missense_Mutation p.E301K 0.42 tolerated(0.1) possibly_damaging(0.877) TCGA-FS-A1Z3-06 21 41539173 41539173 G A DSCAM Missense_Mutation p.S997L 0.49 deleterious(0) possibly_damaging(0.507) TCGA-FS-A1Z3-06 21 44837464 44837464 C T SIK1 Silent p.R645R 0.50 TCGA-FS-A1Z3-06 21 45535698 45535698 G A PWP2 Missense_Mutation p.E245K 0.28 tolerated(0.43) benign(0.002) TCGA-FS-A1Z3-06 21 47847571 47847571 C T PCNT Silent p.D2452D 0.42 TCGA-FS-A1Z3-06 21 47847572 47847572 C T PCNT Missense_Mutation p.L2453F 0.40 benign(0) TCGA-FS-A1Z3-06 21 48068504 48068504 C T PRMT2 Silent p.F154F 0.41 TCGA-FS-A1Z3-06 22 18364025 18364025 G A MICAL3 Intron 0.35 TCGA-FS-A1Z3-06 22 19036064 19036064 G A DGCR2 Missense_Mutation p.H299Y 0.40 tolerated(0.09) probably_damaging(0.971) TCGA-FS-A1Z3-06 22 19384447 19384447 G A HIRA Missense_Mutation p.H173Y 0.54 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z3-06 22 19767002 19767002 C T GNB1L 3'Flank 0.54 TCGA-FS-A1Z3-06 22 19961759 19961759 A G ARVCF Missense_Mutation p.F655S 0.23 tolerated(0.05) probably_damaging(0.937) TCGA-FS-A1Z3-06 22 20458247 20458247 G A RIMBP3 Missense_Mutation p.R1019C 0.21 tolerated(0.21) benign(0.021) TCGA-FS-A1Z3-06 22 23438161 23438161 C T GNAZ Silent p.I93I 0.36 TCGA-FS-A1Z3-06 22 24219372 24219372 C T SLC2A11 Intron 0.43 TCGA-FS-A1Z3-06 22 24226883 24226883 C T SLC2A11 Silent p.V453V 0.43 TCGA-FS-A1Z3-06 22 25625517 25625517 G A CRYBB2 Missense_Mutation p.V141M 0.29 deleterious(0.01) possibly_damaging(0.9) TCGA-FS-A1Z3-06 22 26399266 26399266 G A MYO18B Missense_Mutation p.R2108Q 0.44 tolerated(0.47) benign(0.004) TCGA-FS-A1Z3-06 22 30517760 30517760 C T HORMAD2 Missense_Mutation p.L184F 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 22 32108232 32108232 A C PRR14L Missense_Mutation p.S1865A 0.38 deleterious(0.02) possibly_damaging(0.876) TCGA-FS-A1Z3-06 22 32445929 32445929 G A SLC5A1 Splice_Site p.X46_splice 0.39 TCGA-FS-A1Z3-06 22 32828468 32828468 G A BPIFC Silent p.P347P 0.43 TCGA-FS-A1Z3-06 22 32831816 32831816 G A BPIFC Missense_Mutation p.P267S 0.39 deleterious(0.02) probably_damaging(1) TCGA-FS-A1Z3-06 22 33670592 33670592 G A LARGE Silent p.L698L 0.45 TCGA-FS-A1Z3-06 22 35481508 35481508 C T ISX Missense_Mutation p.S187L 0.44 tolerated(0.46) benign(0.001) TCGA-FS-A1Z3-06 22 38035853 38035853 G A SH3BP1 Missense_Mutation p.R20H 0.50 deleterious(0.01) probably_damaging(0.94) TCGA-FS-A1Z3-06 22 38035854 38035854 G A SH3BP1 Splice_Site p.X20_splice 0.55 TCGA-FS-A1Z3-06 22 38075768 38075768 C T LGALS1 3'UTR 0.51 TCGA-FS-A1Z3-06 22 38121702 38121702 C T TRIOBP Missense_Mutation p.P1047S 0.36 tolerated_low_confidence(1) benign(0.007) TCGA-FS-A1Z3-06 22 38478710 38478710 C T SLC16A8 Silent p.T57T 0.56 TCGA-FS-A1Z3-06 22 38516831 38516831 G A PLA2G6 Silent p.P559P 0.41 TCGA-FS-A1Z3-06 22 38620935 38620935 G A TMEM184B Missense_Mutation p.S280L 0.46 tolerated(0.16) benign(0.009) TCGA-FS-A1Z3-06 22 41783516 41783516 G A TEF Missense_Mutation p.E107K 0.52 deleterious(0.02) probably_damaging(0.976) TCGA-FS-A1Z3-06 22 42174719 42174719 G A MEI1 Silent p.G906G 0.36 TCGA-FS-A1Z3-06 22 44489833 44489833 G C PARVB Missense_Mutation p.K79N 0.35 deleterious(0.04) possibly_damaging(0.726) TCGA-FS-A1Z3-06 22 46655701 46655701 C T PKDREJ Silent p.R1173R 0.35 TCGA-FS-A1Z3-06 22 46712274 46712274 C T GTSE1 Missense_Mutation p.P466L 0.37 deleterious(0.05) possibly_damaging(0.763) TCGA-FS-A1Z3-06 22 46795689 46795689 G A CELSR1 Silent p.I1779I 0.49 TCGA-FS-A1Z3-06 22 50552966 50552966 T C MOV10L1 Silent p.N347N 0.27 TCGA-FS-A1Z3-06 2 100903441 100903441 C T LONRF2 Missense_Mutation p.D669N 0.47 tolerated(0.05) probably_damaging(0.998) TCGA-FS-A1Z3-06 2 101099714 101099714 G A NMS Silent p.Q150Q 0.45 TCGA-FS-A1Z3-06 2 101564795 101564795 C T NPAS2 Silent p.S154S 0.24 TCGA-FS-A1Z3-06 2 103142761 103142761 A C SLC9A4 Missense_Mutation p.N665T 0.48 tolerated(0.86) benign(0.002) TCGA-FS-A1Z3-06 2 103431349 103431349 C T TMEM182 Silent p.A204A 0.42 TCGA-FS-A1Z3-06 2 106761704 106761704 G A UXS1 Silent p.I138I 0.21 TCGA-FS-A1Z3-06 2 107040656 107040656 T A RGPD3 Missense_Mutation p.E1256V 0.37 deleterious(0.01) possibly_damaging(0.824) TCGA-FS-A1Z3-06 2 108487691 108487691 G A RGPD4 Nonsense_Mutation p.W1077* 0.40 TCGA-FS-A1Z3-06 2 108487700 108487700 G A RGPD4 Silent p.R1080R 0.38 TCGA-FS-A1Z3-06 2 112786132 112786132 C T MERTK Silent p.I897I 0.39 TCGA-FS-A1Z3-06 2 120003117 120003117 G C STEAP3 Silent p.V25V 0.36 TCGA-FS-A1Z3-06 2 120003118 120003118 G A STEAP3 Missense_Mutation p.D26N 0.36 tolerated(0.36) benign(0.286) TCGA-FS-A1Z3-06 2 128389895 128389895 C T MYO7B Missense_Mutation p.P1749L 0.49 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z3-06 2 133721423 133721423 T G NCKAP5 Missense_Mutation p.E150A 0.35 tolerated(0.07) probably_damaging(0.974) TCGA-FS-A1Z3-06 2 135621102 135621102 G T ACMSD Missense_Mutation p.M129I 0.44 tolerated(0.06) benign(0.013) TCGA-FS-A1Z3-06 2 135756462 135756462 G A MAP3K19 Silent p.P140P 0.40 TCGA-FS-A1Z3-06 2 135890479 135890479 T A RAB3GAP1 Missense_Mutation p.D417E 0.32 deleterious(0.01) probably_damaging(0.965) TCGA-FS-A1Z3-06 2 136691503 136691503 G A DARS Missense_Mutation p.R161W 0.41 deleterious(0) probably_damaging(0.991) TCGA-FS-A1Z3-06 2 141110552 141110552 G A LRP1B Nonsense_Mutation p.Q3874* 0.39 TCGA-FS-A1Z3-06 2 142012091 142012091 C T LRP1B Missense_Mutation p.D155N 0.28 possibly_damaging(0.822) TCGA-FS-A1Z3-06 2 155158006 155158006 C T GALNT13 Missense_Mutation p.P354S 0.25 deleterious(0.05) benign(0.15) TCGA-FS-A1Z3-06 2 155295205 155295205 G A GALNT13 Missense_Mutation p.M499I 0.41 tolerated(0.4) benign(0.043) TCGA-FS-A1Z3-06 2 160031580 160031580 C T TANC1 Silent p.D540D 0.38 TCGA-FS-A1Z3-06 2 160294897 160294897 G A BAZ2B Missense_Mutation p.P404S 0.37 possibly_damaging(0.641) TCGA-FS-A1Z3-06 2 16085827 16085827 C T MYCN Missense_Mutation p.P335S 0.41 deleterious(0) possibly_damaging(0.754) TCGA-FS-A1Z3-06 2 163059615 163059615 G A FAP Missense_Mutation p.S363L 0.14 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A1Z3-06 2 163374645 163374645 G A KCNH7 Missense_Mutation p.P163S 0.42 deleterious(0.03) benign(0.059) TCGA-FS-A1Z3-06 2 1647274 1647276 ATC CCT PXDN Missense_Mutation p.I1273G 0.10 TCGA-FS-A1Z3-06 2 16745268 16745268 G A FAM49A Missense_Mutation p.S96F 0.34 deleterious(0) possibly_damaging(0.542) TCGA-FS-A1Z3-06 2 167760034 167760034 G A XIRP2 Silent p.Q14Q 0.35 TCGA-FS-A1Z3-06 2 168101452 168101452 G A XIRP2 Missense_Mutation p.E1184K 0.35 probably_damaging(0.944) TCGA-FS-A1Z3-06 2 168102694 168102694 G A XIRP2 Missense_Mutation p.E1598K 0.47 probably_damaging(0.999) TCGA-FS-A1Z3-06 2 169939973 169939973 C T DHRS9 Missense_Mutation p.P150S 0.37 tolerated(0.06) probably_damaging(0.943) TCGA-FS-A1Z3-06 2 170002343 170002343 C T LRP2 Missense_Mutation p.G4301E 0.44 probably_damaging(1) TCGA-FS-A1Z3-06 2 170097679 170097679 C T LRP2 Nonsense_Mutation p.W1288* 0.32 TCGA-FS-A1Z3-06 2 171243660 171243660 C T MYO3B Silent p.S473S 0.41 TCGA-FS-A1Z3-06 2 171248040 171248040 A C MYO3B Missense_Mutation p.N530H 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 2 173891334 173891334 G A RAPGEF4 Missense_Mutation p.G763E 0.40 deleterious(0.03) probably_damaging(1) TCGA-FS-A1Z3-06 2 179435844 179435844 G A TTN Silent p.D25005D 0.43 TCGA-FS-A1Z3-06 2 179439686 179439686 C T TTN Missense_Mutation p.D23725N 0.36 TCGA-FS-A1Z3-06 2 179440965 179440965 G A TTN Silent p.I23298I 0.38 TCGA-FS-A1Z3-06 2 179446723 179446723 C T TTN Missense_Mutation p.E22125K 0.34 TCGA-FS-A1Z3-06 2 179455074 179455074 C T TTN Missense_Mutation p.E20460K 0.42 TCGA-FS-A1Z3-06 2 179463874 179463874 G A TTN Silent p.F18882F 0.41 TCGA-FS-A1Z3-06 2 179500317 179500317 C T TTN Missense_Mutation p.E13912K 0.36 TCGA-FS-A1Z3-06 2 179531961 179531961 A G TTN Splice_Site p.X11933_splice 0.38 TCGA-FS-A1Z3-06 2 179592079 179592079 C T TTN Silent p.K6671K 0.48 TCGA-FS-A1Z3-06 2 179616027 179616027 C T TTN Intron 0.24 TCGA-FS-A1Z3-06 2 179622408 179622408 G A TTN Silent p.F3513F 0.41 TCGA-FS-A1Z3-06 2 182394310 182394310 G A ITGA4 Missense_Mutation p.E825K 0.40 tolerated(0.12) benign(0.094) TCGA-FS-A1Z3-06 2 183104880 183104880 G A PDE1A Missense_Mutation p.R119W 0.48 deleterious(0.02) probably_damaging(1) TCGA-FS-A1Z3-06 2 185802413 185802413 G A ZNF804A Missense_Mutation p.E764K 0.36 deleterious(0.03) benign(0.239) TCGA-FS-A1Z3-06 2 185802718 185802718 C T ZNF804A Silent p.I865I 0.48 TCGA-FS-A1Z3-06 2 189839238 189839238 G A COL3A1 Missense_Mutation p.G8E 0.28 unknown(0) TCGA-FS-A1Z3-06 2 189849651 189849651 G A COL3A1 Missense_Mutation p.G82E 0.46 unknown(0) TCGA-FS-A1Z3-06 2 189872648 189872648 G A COL3A1 Missense_Mutation p.G1134E 0.36 unknown(0) TCGA-FS-A1Z3-06 2 189873725 189873725 G A COL3A1 Missense_Mutation p.G1201R 0.43 unknown(0) TCGA-FS-A1Z3-06 2 190924968 190924968 G A MSTN Silent p.I189I 0.39 TCGA-FS-A1Z3-06 2 192701219 192701219 C T SDPR Silent p.L236L 0.46 TCGA-FS-A1Z3-06 2 192863813 192863813 C T TMEFF2 Missense_Mutation p.E220K 0.35 deleterious(0.04) possibly_damaging(0.489) TCGA-FS-A1Z3-06 2 196682511 196682511 C T DNAH7 Missense_Mutation p.D3112N 0.46 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 2 196729357 196729357 C T DNAH7 Missense_Mutation p.G2341E 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 2 196922781 196922781 A - DNAH7 Frame_Shift_Del p.M26Wfs*4 0.21 TCGA-FS-A1Z3-06 2 202149821 202149821 G A CASP8 Missense_Mutation p.G421E 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 2 202492833 202492833 A T TMEM237 Missense_Mutation p.F303L 0.32 tolerated(0.28) benign(0.024) TCGA-FS-A1Z3-06 2 202580434 202580434 G A ALS2 Missense_Mutation p.A1322V 0.48 deleterious(0) possibly_damaging(0.493) TCGA-FS-A1Z3-06 2 203759326 203759326 C T WDR12 Silent p.K211K 0.44 TCGA-FS-A1Z3-06 2 205990428 205990428 C T PARD3B Silent p.A467A 0.33 TCGA-FS-A1Z3-06 2 206874380 206874380 G A INO80D Missense_Mutation p.P561S 0.39 deleterious(0) probably_damaging(0.928) TCGA-FS-A1Z3-06 2 207414845 207414845 G A ADAM23 Missense_Mutation p.M298I 0.31 deleterious(0.01) benign(0.4) TCGA-FS-A1Z3-06 2 207457427 207457427 C T ADAM23 Missense_Mutation p.S682F 0.29 deleterious(0.03) possibly_damaging(0.791) TCGA-FS-A1Z3-06 2 210574799 210574799 C T MAP2 Missense_Mutation p.P1632S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 2 215279072 215279072 G A VWC2L Missense_Mutation p.G52E 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A1Z3-06 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.23 tolerated(0.35) probably_damaging(0.947) TCGA-FS-A1Z3-06 2 217724336 217724336 C T TNP1 3'UTR 0.40 TCGA-FS-A1Z3-06 2 219247685 219247685 G A SLC11A1 Missense_Mutation p.D4N 0.38 deleterious(0.05) benign(0.003) TCGA-FS-A1Z3-06 2 219528925 219528925 G A RNF25 Missense_Mutation p.L379F 0.37 tolerated(0.29) benign(0.008) TCGA-FS-A1Z3-06 2 219694934 219694934 C T PRKAG3 Missense_Mutation p.E134K 0.41 deleterious_low_confidence(0.05) benign(0.034) TCGA-FS-A1Z3-06 2 220472776 220472776 C T STK11IP Silent p.F420F 0.32 TCGA-FS-A1Z3-06 2 220505162 220505162 C T SLC4A3 Silent p.I1123I 0.35 TCGA-FS-A1Z3-06 2 223786022 223786022 T C ACSL3 Missense_Mutation p.L277S 0.47 tolerated(0.74) benign(0.02) TCGA-FS-A1Z3-06 2 227922301 227922301 G A COL4A4 Missense_Mutation p.P800L 0.27 possibly_damaging(0.908) TCGA-FS-A1Z3-06 2 228109668 228109668 G A COL4A3 Missense_Mutation p.G94E 0.46 probably_damaging(1) TCGA-FS-A1Z3-06 2 228883106 228883106 C T SPHKAP Missense_Mutation p.D822N 0.44 tolerated(0.95) benign(0.001) TCGA-FS-A1Z3-06 2 230911095 230911095 C T SLC16A14 Silent p.K249K 0.35 TCGA-FS-A1Z3-06 2 230923874 230923874 G A SLC16A14 Silent p.F65F 0.38 TCGA-FS-A1Z3-06 2 231106164 231106164 T G SP140 Nonsense_Mutation p.L151* 0.37 TCGA-FS-A1Z3-06 2 231222634 231222634 C T SP140L Silent p.F74F 0.45 TCGA-FS-A1Z3-06 2 233028322 233028322 C T DIS3L2 Silent p.F368F 0.39 TCGA-FS-A1Z3-06 2 233272986 233272986 G A ALPPL2 Missense_Mutation p.G220S 0.35 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 2 237489211 237489211 C T ACKR3 Missense_Mutation p.P35S 0.46 tolerated(0.28) benign(0.001) TCGA-FS-A1Z3-06 2 238449466 238449466 A T MLPH Missense_Mutation p.T438S 0.31 deleterious(0.04) benign(0.065) TCGA-FS-A1Z3-06 2 240029877 240029877 G A HDAC4 Missense_Mutation p.L656F 0.40 deleterious(0) probably_damaging(0.971) TCGA-FS-A1Z3-06 2 240929550 240929550 G A NDUFA10 Missense_Mutation p.L314F 0.48 deleterious(0.01) possibly_damaging(0.835) TCGA-FS-A1Z3-06 2 241069367 241069367 G A MYEOV2 Silent p.V114V 0.37 TCGA-FS-A1Z3-06 2 242194856 242194856 G A HDLBP Missense_Mutation p.S338F 0.35 deleterious(0) possibly_damaging(0.886) TCGA-FS-A1Z3-06 2 242511862 242511862 G A BOK 3'UTR 0.27 TCGA-FS-A1Z3-06 2 242648673 242648673 C T ING5 Missense_Mutation p.S51F 0.43 deleterious(0.01) possibly_damaging(0.682) TCGA-FS-A1Z3-06 2 25972870 25972870 C T ASXL2 Missense_Mutation p.E519K 0.32 tolerated(0.18) benign(0.146) TCGA-FS-A1Z3-06 2 26700092 26700092 T C OTOF Missense_Mutation p.K824R 0.48 tolerated(0.43) benign(0.005) TCGA-FS-A1Z3-06 2 26781399 26781399 C T OTOF Missense_Mutation p.R14Q 0.30 deleterious(0.04) benign(0.14) TCGA-FS-A1Z3-06 2 27455060 27455060 C T CAD Silent p.F871F 0.44 TCGA-FS-A1Z3-06 2 27803558 27803558 G A C2orf16 Silent p.R1373R 0.44 TCGA-FS-A1Z3-06 2 31751289 31751289 C T AL133247.2 5'Flank 0.45 TCGA-FS-A1Z3-06 2 31751290 31751290 T C AL133247.2 5'Flank 0.45 TCGA-FS-A1Z3-06 2 32733298 32733298 C T BIRC6 Missense_Mutation p.P3318S 0.56 possibly_damaging(0.829) TCGA-FS-A1Z3-06 2 33413645 33413645 G A LTBP1 Silent p.V476V 0.44 TCGA-FS-A1Z3-06 2 37458795 37458795 G A CEBPZ 5'UTR 0.37 TCGA-FS-A1Z3-06 2 42671467 42671467 G A KCNG3 Silent p.F306F 0.50 TCGA-FS-A1Z3-06 2 48921420 48921420 G A LHCGR Missense_Mutation p.S297F 0.40 tolerated(0.76) benign(0) TCGA-FS-A1Z3-06 2 60688615 60688615 G A BCL11A Silent p.L478L 0.41 TCGA-FS-A1Z3-06 2 63086369 63086369 C T EHBP1 Missense_Mutation p.P269S 0.44 deleterious(0.05) benign(0.063) TCGA-FS-A1Z3-06 2 69555565 69555565 G A GFPT1 Silent p.I577I 0.42 TCGA-FS-A1Z3-06 2 74274262 74274262 G A TET3 Nonsense_Mutation p.W271* 0.43 TCGA-FS-A1Z3-06 2 76975895 76975895 G A LRRTM4 Nonsense_Mutation p.R567* 0.48 TCGA-FS-A1Z3-06 2 85531398 85531398 C T TCF7L1 Missense_Mutation p.S261F 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-FS-A1Z3-06 2 88425733 88425733 C T FABP1 Missense_Mutation p.E68K 0.38 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z3-06 2 88472834 88472834 G A THNSL2 Silent p.V55V 0.53 TCGA-FS-A1Z3-06 2 89544419 89544419 G A IGKV2-30 Missense_Mutation p.P69S 0.37 deleterious(0) possibly_damaging(0.851) TCGA-FS-A1Z3-06 2 95513772 95513772 G A RNU6-1320P 5'Flank 0.08 TCGA-FS-A1Z3-06 2 97526994 97526994 G A SEMA4C Missense_Mutation p.A624V 0.42 tolerated(0.26) benign(0.002) TCGA-FS-A1Z3-06 2 98828474 98828474 G A VWA3B Missense_Mutation p.D607N 0.41 deleterious(0) probably_damaging(0.995) TCGA-FS-A1Z3-06 3 108719493 108719493 C T MORC1 Missense_Mutation p.E700K 0.51 tolerated(0.27) benign(0.003) TCGA-FS-A1Z3-06 3 108751625 108751625 C T MORC1 Missense_Mutation p.E503K 0.31 tolerated(0.19) benign(0.018) TCGA-FS-A1Z3-06 3 108781996 108781996 T C MORC1 Intron 0.47 TCGA-FS-A1Z3-06 3 113346517 113346517 C T SIDT1 Missense_Mutation p.L816F 0.43 deleterious(0) probably_damaging(0.972) TCGA-FS-A1Z3-06 3 113374479 113374479 G A KIAA2018 Missense_Mutation p.S2017F 0.29 possibly_damaging(0.486) TCGA-FS-A1Z3-06 3 113664393 113664393 G A GRAMD1C 3'UTR 0.50 TCGA-FS-A1Z3-06 3 118866303 118866303 C T C3orf30 Missense_Mutation p.P423S 0.32 tolerated(1) benign(0.402) TCGA-FS-A1Z3-06 3 118866304 118866304 C T C3orf30 Missense_Mutation p.P423L 0.33 tolerated(0.42) benign(0.088) TCGA-FS-A1Z3-06 3 121100379 121100379 G A STXBP5L Missense_Mutation p.G887S 0.47 deleterious(0.04) probably_damaging(0.941) TCGA-FS-A1Z3-06 3 121712501 121712501 C T ILDR1 Silent p.R365R 0.38 TCGA-FS-A1Z3-06 3 122354921 122354921 G A PARP15 Missense_Mutation p.E671K 0.28 deleterious(0) probably_damaging(0.989) TCGA-FS-A1Z3-06 3 124998089 124998089 G A ZNF148 Silent p.I154I 0.42 TCGA-FS-A1Z3-06 3 126219672 126219672 C T UROC1 Silent p.V397V 0.40 TCGA-FS-A1Z3-06 3 128706597 128706597 C T KIAA1257 Missense_Mutation p.E177K 0.57 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z3-06 3 129221700 129221700 A T IFT122 Missense_Mutation p.H892L 0.40 tolerated(0.26) benign(0.026) TCGA-FS-A1Z3-06 3 131306348 131306348 C T CPNE4 Missense_Mutation p.G254R 0.41 tolerated(0.46) benign(0.109) TCGA-FS-A1Z3-06 3 132207199 132207199 A G DNAJC13 Missense_Mutation p.I1109V 0.39 tolerated(0.83) benign(0.002) TCGA-FS-A1Z3-06 3 133667501 133667501 G A SLCO2A1 Silent p.F328F 0.49 TCGA-FS-A1Z3-06 3 139894863 139894863 T G CLSTN2 Missense_Mutation p.I60M 0.40 deleterious(0.03) benign(0.042) TCGA-FS-A1Z3-06 3 1444012 1444012 G A CNTN6 Missense_Mutation p.R943Q 0.30 deleterious(0) possibly_damaging(0.601) TCGA-FS-A1Z3-06 3 1444013 1444013 G A CNTN6 Silent p.R943R 0.30 TCGA-FS-A1Z3-06 3 1445145 1445145 C T CNTN6 3'UTR 0.33 TCGA-FS-A1Z3-06 3 145914451 145914451 T C PLSCR4 Missense_Mutation p.T252A 0.43 tolerated(0.29) possibly_damaging(0.519) TCGA-FS-A1Z3-06 3 150644579 150644579 T A CLRN1 3'Flank 0.33 TCGA-FS-A1Z3-06 3 151165643 151165643 C T IGSF10 Missense_Mutation p.G709E 0.43 tolerated(0.24) possibly_damaging(0.672) TCGA-FS-A1Z3-06 3 154139227 154139227 C T GPR149 Silent p.G408G 0.49 TCGA-FS-A1Z3-06 3 167023654 167023654 G A ZBBX Missense_Mutation p.S501F 0.32 tolerated(0.78) benign(0.002) TCGA-FS-A1Z3-06 3 167185017 167185017 C T SERPINI2 Missense_Mutation p.E102K 0.31 deleterious(0.02) probably_damaging(0.987) TCGA-FS-A1Z3-06 3 169099230 169099230 G A MECOM Silent p.S64S 0.45 TCGA-FS-A1Z3-06 3 169664092 169664092 G A RP11-379K17.4 RNA 0.38 TCGA-FS-A1Z3-06 3 17109458 17109458 C T PLCL2 Silent p.F909F 0.42 TCGA-FS-A1Z3-06 3 171455441 171455441 G A PLD1 Missense_Mutation p.P57S 0.44 tolerated(0.05) probably_damaging(0.999) TCGA-FS-A1Z3-06 3 175473144 175473144 T A NAALADL2 Missense_Mutation p.N709K 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 3 184020522 184020522 C T PSMD2 Silent p.L307L 0.45 TCGA-FS-A1Z3-06 3 184573563 184573563 C T VPS8 Missense_Mutation p.P367L 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 3 186460032 186460032 G A KNG1 Missense_Mutation p.G616E 0.42 deleterious(0) probably_damaging(0.974) TCGA-FS-A1Z3-06 3 186839019 186839019 G A RPL39L Missense_Mutation p.P24S 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1Z3-06 3 189681855 189681855 G A LEPREL1 Silent p.I642I 0.49 TCGA-FS-A1Z3-06 3 193002735 193002735 C T ATP13A5 Missense_Mutation p.G1065E 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 3 195505223 195505223 G A MUC4 Silent p.A4298A 0.38 TCGA-FS-A1Z3-06 3 20215927 20215927 C T SGOL1 Missense_Mutation p.V366M 0.39 tolerated(0.19) benign(0.114) TCGA-FS-A1Z3-06 3 36898195 36898195 C T TRANK1 Silent p.R962R 0.38 TCGA-FS-A1Z3-06 3 38180251 38180251 T C MYD88 Silent p.L33L 0.40 TCGA-FS-A1Z3-06 3 38180252 38180252 C A MYD88 Missense_Mutation p.P34T 0.38 deleterious(0) possibly_damaging(0.803) TCGA-FS-A1Z3-06 3 38591685 38591685 G A SCN5A 3'UTR 0.41 TCGA-FS-A1Z3-06 3 38651405 38651405 C T SCN5A Missense_Mutation p.D252N 0.42 tolerated(0.13) probably_damaging(0.998) TCGA-FS-A1Z3-06 3 38739587 38739587 G A SCN10A Silent p.I1708I 0.47 TCGA-FS-A1Z3-06 3 38904762 38904762 T A SCN11A Missense_Mutation p.E1327V 0.36 deleterious(0) probably_damaging(0.98) TCGA-FS-A1Z3-06 3 38908865 38908865 G A SCN11A Silent p.L1300L 0.36 TCGA-FS-A1Z3-06 3 39184611 39184611 G A CSRNP1 Missense_Mutation p.P569S 0.40 tolerated(0.09) benign(0.284) TCGA-FS-A1Z3-06 3 39229363 39229363 C T XIRP1 Missense_Mutation p.G525D 0.44 tolerated(0.58) possibly_damaging(0.719) TCGA-FS-A1Z3-06 3 39229364 39229364 C T XIRP1 Missense_Mutation p.G525S 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1Z3-06 3 40529675 40529675 C T ZNF619 Silent p.L598L 0.40 TCGA-FS-A1Z3-06 3 430940 430940 G A CHL1 Silent p.L751L 0.57 TCGA-FS-A1Z3-06 3 43756547 43756547 C T ABHD5 Missense_Mutation p.P257L 0.59 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z3-06 3 44672663 44672663 C G ZNF197 Missense_Mutation p.P167R 0.45 tolerated(0.68) benign(0.001) TCGA-FS-A1Z3-06 3 46244764 46244764 C T CCR1 Silent p.G347G 0.55 TCGA-FS-A1Z3-06 3 46401237 46401237 G A CCR2 Silent p.V337V 0.49 TCGA-FS-A1Z3-06 3 46488859 46488859 C T LTF Missense_Mutation p.G415R 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 3 46964839 46964839 G A CCDC12 Silent p.L120L 0.45 TCGA-FS-A1Z3-06 3 48627094 48627094 G A COL7A1 Missense_Mutation p.T703I 0.37 unknown(0) TCGA-FS-A1Z3-06 3 48895122 48895122 G A SLC25A20 3'UTR 0.40 TCGA-FS-A1Z3-06 3 49068078 49068078 C T QRICH1 Splice_Site p.X713_splice 0.41 TCGA-FS-A1Z3-06 3 49935521 49935521 G A MST1R Missense_Mutation p.P615S 0.42 tolerated(0.16) benign(0.34) TCGA-FS-A1Z3-06 3 52404140 52404140 C T DNAH1 Silent p.F2051F 0.39 TCGA-FS-A1Z3-06 3 52486251 52486251 C T TNNC1 Missense_Mutation p.D25N 0.38 tolerated(0.06) benign(0.105) TCGA-FS-A1Z3-06 3 53155763 53155763 G A RFT1 Silent p.L170L 0.48 TCGA-FS-A1Z3-06 3 54958793 54958793 C T LRTM1 Missense_Mutation p.V153I 0.41 tolerated(0.17) benign(0.133) TCGA-FS-A1Z3-06 3 58552428 58552428 G A FAM107A Intron 0.47 TCGA-FS-A1Z3-06 3 68782291 68782291 C T FAM19A4 3'UTR 0.43 TCGA-FS-A1Z3-06 3 68934389 68934389 G A FAM19A4 5'UTR 0.36 TCGA-FS-A1Z3-06 3 69360499 69360499 G A FRMD4B Silent p.L80L 0.44 TCGA-FS-A1Z3-06 3 86996198 86996198 C T VGLL3 Silent p.K319K 0.33 TCGA-FS-A1Z3-06 3 88040297 88040297 G A HTR1F Missense_Mutation p.R133K 0.34 tolerated(1) possibly_damaging(0.5) TCGA-FS-A1Z3-06 3 89259262 89259262 C T EPHA3 Nonsense_Mutation p.R136* 0.44 TCGA-FS-A1Z3-06 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 3 9786133 9786133 C T BRPF1 Missense_Mutation p.P954L 0.54 tolerated(0.24) probably_damaging(0.999) TCGA-FS-A1Z3-06 3 9786134 9786134 C T BRPF1 Silent p.P954P 0.54 TCGA-FS-A1Z3-06 3 98216779 98216779 C T OR5K2 Silent p.F85F 0.38 TCGA-FS-A1Z3-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1Z3-06 4 100266220 100266220 C T ADH1C Silent p.G122G 0.33 TCGA-FS-A1Z3-06 4 101109270 101109271 - ATATTACCT DDIT4L Nonsense_Mutation p.I48_F49ins* 0.17 TCGA-FS-A1Z3-06 4 103516075 103516075 C T NFKB1 Missense_Mutation p.P413S 0.48 tolerated(0.81) benign(0.013) TCGA-FS-A1Z3-06 4 105411974 105411974 C T CXXC4 Missense_Mutation p.R329H 0.07 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 4 109663574 109663574 G A ETNPPL 3'UTR 0.38 TCGA-FS-A1Z3-06 4 122853716 122853716 C T TRPC3 Missense_Mutation p.D233N 0.45 deleterious(0) probably_damaging(0.951) TCGA-FS-A1Z3-06 4 123160823 123160823 A T KIAA1109 Missense_Mutation p.Y1329F 0.40 benign(0.003) TCGA-FS-A1Z3-06 4 126372792 126372792 C T FAT4 Nonsense_Mutation p.Q3541* 0.37 TCGA-FS-A1Z3-06 4 126412372 126412372 C T FAT4 Missense_Mutation p.R4799C 0.47 probably_damaging(0.996) TCGA-FS-A1Z3-06 4 129778548 129778548 C T JADE1 Missense_Mutation p.P307L 0.37 deleterious(0) probably_damaging(0.987) TCGA-FS-A1Z3-06 4 141310286 141310286 G A CLGN 3'UTR 0.54 TCGA-FS-A1Z3-06 4 153864541 153864541 G A FHDC1 Missense_Mutation p.R111Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 4 155507651 155507651 A G FGA Silent p.P310P 0.46 TCGA-FS-A1Z3-06 4 156643259 156643259 C T GUCY1A3 Missense_Mutation p.L596F 0.33 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 4 160277080 160277080 C T RAPGEF2 Missense_Mutation p.P1415L 0.38 tolerated_low_confidence(0.24) benign(0.017) TCGA-FS-A1Z3-06 4 162307269 162307269 C T FSTL5 Missense_Mutation p.G725E 0.52 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 4 169172115 169172115 C T DDX60 Missense_Mutation p.G1283E 0.53 deleterious(0) probably_damaging(0.98) TCGA-FS-A1Z3-06 4 169176921 169176921 G A DDX60 Silent p.A1166A 0.43 TCGA-FS-A1Z3-06 4 170028325 170028325 G A SH3RF1 Missense_Mutation p.S724F 0.53 deleterious(0) benign(0.299) TCGA-FS-A1Z3-06 4 17609198 17609198 C T LAP3 Nonsense_Mutation p.Q516* 0.45 TCGA-FS-A1Z3-06 4 177608657 177608657 G A VEGFC Missense_Mutation p.H277Y 0.50 tolerated(0.17) benign(0.409) TCGA-FS-A1Z3-06 4 183717789 183717789 G A TENM3 Splice_Site p.X2405_splice 0.30 TCGA-FS-A1Z3-06 4 25005285 25005285 G A LGI2 Missense_Mutation p.H476Y 0.44 tolerated(0.15) benign(0.032) TCGA-FS-A1Z3-06 4 25806357 25806357 C T SEL1L3 Missense_Mutation p.E528K 0.34 tolerated(0.64) benign(0.002) TCGA-FS-A1Z3-06 4 3101041 3101041 G A HTT Missense_Mutation p.E130K 0.49 possibly_damaging(0.728) TCGA-FS-A1Z3-06 4 36115827 36115827 C T ARAP2 Nonsense_Mutation p.W1374* 0.33 TCGA-FS-A1Z3-06 4 38690482 38690482 C T KLF3 Missense_Mutation p.P112S 0.41 tolerated(0.46) benign(0.001) TCGA-FS-A1Z3-06 4 40104609 40104609 C T N4BP2 Missense_Mutation p.P382S 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 4 40356374 40356374 G A CHRNA9 Missense_Mutation p.R426K 0.58 tolerated(0.58) benign(0.011) TCGA-FS-A1Z3-06 4 47556855 47556855 A T ATP10D Missense_Mutation p.Y583F 0.49 tolerated(0.65) possibly_damaging(0.799) TCGA-FS-A1Z3-06 4 47593379 47593379 C T ATP10D Missense_Mutation p.S1421F 0.39 deleterious_low_confidence(0.01) benign(0.054) TCGA-FS-A1Z3-06 4 48082087 48082087 G A TXK Missense_Mutation p.L339F 0.41 deleterious(0.04) possibly_damaging(0.513) TCGA-FS-A1Z3-06 4 55153697 55153697 T A PDGFRA Missense_Mutation p.I888N 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 4 55955603 55955603 T G KDR Missense_Mutation p.E1114D 0.44 tolerated(0.25) benign(0.006) TCGA-FS-A1Z3-06 4 57216218 57216218 G A AASDH Silent p.L567L 0.33 TCGA-FS-A1Z3-06 4 57333794 57333794 C T SRP72 5'UTR 0.70 TCGA-FS-A1Z3-06 4 5785332 5785332 C T EVC Silent p.F539F 0.45 TCGA-FS-A1Z3-06 4 68934466 68934466 C T TMPRSS11F Missense_Mutation p.G209R 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 4 69343096 69343096 C T TMPRSS11E Silent p.N239N 0.31 TCGA-FS-A1Z3-06 4 70078409 70078409 C T UGT2B11 Missense_Mutation p.G251E 0.29 deleterious(0.02) benign(0.019) TCGA-FS-A1Z3-06 4 70156420 70156420 G A UGT2B28 Missense_Mutation p.D401N 0.53 deleterious(0.02) benign(0.019) TCGA-FS-A1Z3-06 4 70346374 70346374 C T UGT2B4 Missense_Mutation p.G522E 0.40 tolerated(0.15) benign(0.062) TCGA-FS-A1Z3-06 4 70361388 70361388 G A UGT2B4 Silent p.F64F 0.39 TCGA-FS-A1Z3-06 4 71255479 71255479 C T SMR3B Missense_Mutation p.P52S 0.33 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1Z3-06 4 74285287 74285287 G A ALB Missense_Mutation p.M572I 0.33 tolerated(0.66) benign(0.001) TCGA-FS-A1Z3-06 4 74347574 74347574 G A AFM Missense_Mutation p.D28N 0.39 tolerated(0.07) probably_damaging(0.911) TCGA-FS-A1Z3-06 4 77247155 77247155 C T CCDC158 Silent p.V1004V 0.37 TCGA-FS-A1Z3-06 4 80328149 80328149 G A GK2 Silent p.F402F 0.44 TCGA-FS-A1Z3-06 4 80328422 80328422 C T GK2 Silent p.E311E 0.45 TCGA-FS-A1Z3-06 4 81207778 81207778 G A FGF5 Silent p.R253R 0.40 TCGA-FS-A1Z3-06 4 81791175 81791175 C T C4orf22 Missense_Mutation p.S138F 0.54 deleterious(0.01) possibly_damaging(0.789) TCGA-FS-A1Z3-06 4 82366918 82366918 C T RASGEF1B Silent p.L268L 0.41 TCGA-FS-A1Z3-06 4 83372251 83372251 A C ENOPH1 Missense_Mutation p.N81T 0.41 tolerated(0.5) benign(0.001) TCGA-FS-A1Z3-06 4 85414682 85414682 C T NKX6-1 Silent p.R288R 0.36 TCGA-FS-A1Z3-06 4 88243985 88243985 G A HSD17B13 Silent p.I3I 0.36 TCGA-FS-A1Z3-06 4 88767428 88767428 C T MEPE Missense_Mutation p.H470Y 0.37 tolerated(0.13) benign(0.063) TCGA-FS-A1Z3-06 5 101834246 101834246 A G SLCO6A1 Silent p.C101C 0.35 TCGA-FS-A1Z3-06 5 101834439 101834439 C T SLCO6A1 Missense_Mutation p.G37E 0.35 tolerated(1) benign(0) TCGA-FS-A1Z3-06 5 10288574 10288574 G A CMBL Missense_Mutation p.P95S 0.27 tolerated(0.69) benign(0.014) TCGA-FS-A1Z3-06 5 114472711 114472711 G A TRIM36 Missense_Mutation p.S411F 0.41 deleterious(0.01) benign(0.429) TCGA-FS-A1Z3-06 5 115336332 115336332 G A AQPEP Missense_Mutation p.D542N 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 5 118264253 118264253 G A DTWD2 Silent p.S192S 0.54 TCGA-FS-A1Z3-06 5 118835027 118835027 C T HSD17B4 Nonsense_Mutation p.Q355* 0.33 TCGA-FS-A1Z3-06 5 118965380 118965380 C T FAM170A 5'UTR 0.41 TCGA-FS-A1Z3-06 5 1208996 1208996 G A SLC6A19 Missense_Mutation p.G113D 0.54 deleterious(0) benign(0.35) TCGA-FS-A1Z3-06 5 121758805 121758805 G A SNCAIP Missense_Mutation p.G125R 0.46 tolerated(0.11) benign(0.006) TCGA-FS-A1Z3-06 5 122365030 122365030 C T PPIC Silent p.V67V 0.24 TCGA-FS-A1Z3-06 5 126754902 126754902 C T MEGF10 Missense_Mutation p.P466S 0.40 tolerated(0.08) benign(0.027) TCGA-FS-A1Z3-06 5 126754903 126754903 C T MEGF10 Missense_Mutation p.P466L 0.41 deleterious(0.02) possibly_damaging(0.511) TCGA-FS-A1Z3-06 5 129521409 129521409 C T CHSY3 Silent p.F858F 0.39 TCGA-FS-A1Z3-06 5 132585262 132585262 A G FSTL4 Missense_Mutation p.V245A 0.24 deleterious(0.01) benign(0.102) TCGA-FS-A1Z3-06 5 13717505 13717505 G A DNAH5 Silent p.I4208I 0.31 TCGA-FS-A1Z3-06 5 13717507 13717507 T A DNAH5 Missense_Mutation p.I4208F 0.30 possibly_damaging(0.537) TCGA-FS-A1Z3-06 5 13727622 13727622 G A DNAH5 Silent p.I4009I 0.42 TCGA-FS-A1Z3-06 5 13776797 13776797 G A DNAH5 Nonsense_Mutation p.R3042* 0.45 TCGA-FS-A1Z3-06 5 137803563 137803563 C T EGR1 Silent p.S475S 0.54 TCGA-FS-A1Z3-06 5 13794139 13794139 C T DNAH5 Missense_Mutation p.R2639Q 0.44 possibly_damaging(0.553) TCGA-FS-A1Z3-06 5 139060348 139060348 C T CXXC5 Silent p.S80S 0.29 TCGA-FS-A1Z3-06 5 140187629 140187629 C T PCDHA4 Missense_Mutation p.S286L 0.36 tolerated_low_confidence(0.54) benign(0.072) TCGA-FS-A1Z3-06 5 140214893 140214893 G A PCDHA7 Missense_Mutation p.D309N 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 5 140223213 140223213 C T PCDHA8 Silent p.L769L 0.44 TCGA-FS-A1Z3-06 5 140229005 140229005 G A PCDHA9 Missense_Mutation p.D309N 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1Z3-06 5 140307121 140307121 G A PCDHAC1 Missense_Mutation p.G215E 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-FS-A1Z3-06 5 140308647 140308647 G A PCDHAC1 Missense_Mutation p.D724N 0.37 tolerated(0.43) benign(0) TCGA-FS-A1Z3-06 5 140347843 140347843 G A PCDHAC2 Missense_Mutation p.E498K 0.39 tolerated(0.79) benign(0.063) TCGA-FS-A1Z3-06 5 140432758 140432758 A G PCDHB1 Missense_Mutation p.N568S 0.45 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z3-06 5 140475643 140475643 C T PCDHB2 Silent p.I423I 0.39 TCGA-FS-A1Z3-06 5 140516537 140516537 G A PCDHB5 Silent p.A507A 0.50 TCGA-FS-A1Z3-06 5 140626760 140626760 C T PCDHB15 Silent p.F538F 0.48 TCGA-FS-A1Z3-06 5 140740708 140740708 G A PCDHGB2 Missense_Mutation p.E336K 0.48 tolerated(0.16) benign(0.151) TCGA-FS-A1Z3-06 5 140740843 140740843 G A PCDHGB2 Missense_Mutation p.E381K 0.47 tolerated(0.14) benign(0.159) TCGA-FS-A1Z3-06 5 140751047 140751047 G A PCDHGB3 Silent p.L362L 0.45 TCGA-FS-A1Z3-06 5 140773223 140773223 C T PCDHGA8 Silent p.F281F 0.32 TCGA-FS-A1Z3-06 5 140795001 140795001 C T PCDHGA10 Silent p.F753F 0.38 TCGA-FS-A1Z3-06 5 141335629 141335629 A G PCDH12 Silent p.N596N 0.50 TCGA-FS-A1Z3-06 5 149357297 149357297 C T SLC26A2 Missense_Mutation p.H28Y 0.39 tolerated_low_confidence(0.61) benign(0.081) TCGA-FS-A1Z3-06 5 154394530 154394530 G A KIF4B Missense_Mutation p.G371S 0.49 tolerated(0.06) benign(0.102) TCGA-FS-A1Z3-06 5 158585695 158585695 G A RNF145 Missense_Mutation p.P689S 0.35 deleterious_low_confidence(0.04) benign(0.016) TCGA-FS-A1Z3-06 5 159776559 159776559 C A C1QTNF2 Missense_Mutation p.K203N 0.36 tolerated(0.07) possibly_damaging(0.693) TCGA-FS-A1Z3-06 5 160030988 160030988 C T ATP10B Missense_Mutation p.G1074E 0.23 deleterious(0) probably_damaging(0.967) TCGA-FS-A1Z3-06 5 168195207 168195207 C T SLIT3 Intron 0.45 TCGA-FS-A1Z3-06 5 170736421 170736421 T C TLX3 Missense_Mutation p.F18L 0.47 deleterious(0) probably_damaging(0.935) TCGA-FS-A1Z3-06 5 174869086 174869086 C T DRD1 Silent p.K339K 0.38 TCGA-FS-A1Z3-06 5 176638265 176638265 T C NSD1 Silent p.V955V 0.34 TCGA-FS-A1Z3-06 5 177310819 177310819 T C RP11-423H2.1 RNA 0.27 TCGA-FS-A1Z3-06 5 177697355 177697355 C T COL23A1 Missense_Mutation p.G151S 0.23 deleterious(0.02) unknown(0) TCGA-FS-A1Z3-06 5 178199539 178199539 G A AACSP1 RNA 0.48 TCGA-FS-A1Z3-06 5 180167054 180167054 C T OR2Y1 Missense_Mutation p.G2E 0.40 tolerated(1) benign(0.008) TCGA-FS-A1Z3-06 5 21854849 21854849 C T CDH12 Missense_Mutation p.G193R 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 5 24492992 24492992 C T CDH10 Missense_Mutation p.G520S 0.45 tolerated(0.79) benign(0.35) TCGA-FS-A1Z3-06 5 31313487 31313487 C T CDH6 Missense_Mutation p.S439L 0.40 tolerated(0.19) benign(0.408) TCGA-FS-A1Z3-06 5 31521270 31521270 G A DROSHA Silent p.L303L 0.43 TCGA-FS-A1Z3-06 5 32789636 32789636 G A AC026703.1 Silent p.G43G 0.55 TCGA-FS-A1Z3-06 5 33546244 33546244 C T ADAMTS12 Missense_Mutation p.D1456N 0.42 tolerated(0.21) benign(0.29) TCGA-FS-A1Z3-06 5 35026574 35026574 C T AGXT2 Missense_Mutation p.D271N 0.18 tolerated(0.16) benign(0.098) TCGA-FS-A1Z3-06 5 35086390 35086390 C T PRLR Silent p.K41K 0.39 TCGA-FS-A1Z3-06 5 38418213 38418213 G A EGFLAM Missense_Mutation p.G514S 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 5 40854128 40854128 C T CARD6 Silent p.S898S 0.38 TCGA-FS-A1Z3-06 5 40959559 40959559 G A C7 Missense_Mutation p.D500N 0.69 tolerated(0.09) benign(0.126) TCGA-FS-A1Z3-06 5 41181522 41181522 C T C6 Missense_Mutation p.R289K 0.31 tolerated(1) benign(0) TCGA-FS-A1Z3-06 5 41934071 41934071 C T FBXO4 Nonsense_Mutation p.Q224* 0.36 TCGA-FS-A1Z3-06 5 49706744 49706744 C T EMB Missense_Mutation p.E147K 0.39 tolerated(0.38) benign(0.015) TCGA-FS-A1Z3-06 5 56526749 56526749 A T GPBP1 Missense_Mutation p.H54L 0.47 deleterious(0.03) possibly_damaging(0.804) TCGA-FS-A1Z3-06 5 6337335 6337335 G A CTD-2324F15.2 RNA 0.36 TCGA-FS-A1Z3-06 5 68665386 68665386 G A TAF9 Intron 0.39 TCGA-FS-A1Z3-06 5 75993836 75993836 C T IQGAP2 Missense_Mutation p.R1411C 0.32 deleterious(0) probably_damaging(0.957) TCGA-FS-A1Z3-06 5 76028361 76028361 T A F2R Missense_Mutation p.F104Y 0.34 deleterious(0) probably_damaging(0.933) TCGA-FS-A1Z3-06 5 7868072 7868072 C T FASTKD3 Missense_Mutation p.C42Y 0.36 tolerated(1) benign(0.004) TCGA-FS-A1Z3-06 5 79031294 79031294 C T CMYA5 Missense_Mutation p.H2236Y 0.30 benign(0.003) TCGA-FS-A1Z3-06 5 79279506 79279506 C T MTX3 3'UTR 0.38 TCGA-FS-A1Z3-06 5 840728 840728 G A ZDHHC11 Silent p.P222P 0.24 TCGA-FS-A1Z3-06 5 95757591 95757591 C T PCSK1 Missense_Mutation p.E205K 0.43 tolerated(0.05) probably_damaging(0.991) TCGA-FS-A1Z3-06 6 100395743 100395743 C T MCHR2 Missense_Mutation p.G96E 0.42 tolerated(0.07) probably_damaging(0.915) TCGA-FS-A1Z3-06 6 100957947 100957947 G A ASCC3 Missense_Mutation p.P2108S 0.49 tolerated(0.07) possibly_damaging(0.859) TCGA-FS-A1Z3-06 6 102516452 102516452 T G GRIK2 3'UTR 0.38 TCGA-FS-A1Z3-06 6 107102704 107102704 C T QRSL1 Missense_Mutation p.L317F 0.47 deleterious(0) probably_damaging(0.968) TCGA-FS-A1Z3-06 6 10928651 10928651 C T SYCP2L Missense_Mutation p.P486S 0.21 tolerated(0.69) benign(0.007) TCGA-FS-A1Z3-06 6 109690059 109690059 G A CD164 Silent p.L197L 0.18 TCGA-FS-A1Z3-06 6 112020715 112020715 T C FYN Intron 0.47 TCGA-FS-A1Z3-06 6 116784702 116784702 C T FAM26F Missense_Mutation p.S261L 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A1Z3-06 6 119345394 119345394 A T FAM184A Nonsense_Mutation p.Y248* 0.37 TCGA-FS-A1Z3-06 6 119653152 119653152 C T MAN1A1 Intron 0.31 TCGA-FS-A1Z3-06 6 121768321 121768321 G A GJA1 Missense_Mutation p.E110K 0.37 tolerated(0.09) benign(0.197) TCGA-FS-A1Z3-06 6 12296409 12296409 C T EDN1 3'UTR 0.35 TCGA-FS-A1Z3-06 6 123369871 123369871 G A CLVS2 Silent p.R223R 0.38 TCGA-FS-A1Z3-06 6 126210952 126210952 A T NCOA7 Missense_Mutation p.K584N 0.55 tolerated(0.14) benign(0.017) TCGA-FS-A1Z3-06 6 128135060 128135060 G A THEMIS Silent p.I242I 0.41 TCGA-FS-A1Z3-06 6 128326280 128326280 C T PTPRK Missense_Mutation p.E815K 0.38 tolerated(0.19) benign(0.218) TCGA-FS-A1Z3-06 6 128505847 128505847 G A PTPRK Missense_Mutation p.P298S 0.38 deleterious(0) possibly_damaging(0.614) TCGA-FS-A1Z3-06 6 128540177 128540177 G A PTPRK Missense_Mutation p.A253V 0.41 tolerated(0.14) possibly_damaging(0.507) TCGA-FS-A1Z3-06 6 129674431 129674431 G A LAMA2 Missense_Mutation p.R1549Q 0.38 deleterious(0.01) possibly_damaging(0.842) TCGA-FS-A1Z3-06 6 131216181 131216181 G A EPB41L2 Missense_Mutation p.R439C 0.45 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z3-06 6 133078617 133078617 G A VNN2 Silent p.F94F 0.37 TCGA-FS-A1Z3-06 6 133091406 133091406 G A SLC18B1 3'UTR 0.38 TCGA-FS-A1Z3-06 6 137026271 137026271 C T MAP3K5 Missense_Mutation p.E197K 0.50 tolerated(0.06) benign(0.158) TCGA-FS-A1Z3-06 6 138192553 138192553 C T TNFAIP3 Silent p.I63I 0.33 TCGA-FS-A1Z3-06 6 138584581 138584581 G A KIAA1244 Missense_Mutation p.R654Q 0.39 deleterious(0.01) probably_damaging(0.909) TCGA-FS-A1Z3-06 6 146127185 146127185 T C FBXO30 Silent p.Q119Q 0.41 TCGA-FS-A1Z3-06 6 149855853 149855853 G A PPIL4 Silent p.I174I 0.41 TCGA-FS-A1Z3-06 6 152646328 152646328 C T SYNE1 Missense_Mutation p.R5183K 0.37 benign(0.038) TCGA-FS-A1Z3-06 6 157528033 157528033 G T ARID1B Nonsense_Mutation p.E1920* 0.34 TCGA-FS-A1Z3-06 6 158066793 158066793 C T ZDHHC14 Silent p.F259F 0.38 TCGA-FS-A1Z3-06 6 158923027 158923027 C T TULP4 Missense_Mutation p.P778S 0.48 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-FS-A1Z3-06 6 159166549 159166549 T G SYTL3 Missense_Mutation p.M298R 0.44 tolerated(0.34) benign(0.122) TCGA-FS-A1Z3-06 6 159206568 159206568 G A EZR Silent p.F80F 0.39 TCGA-FS-A1Z3-06 6 160484639 160484639 C T IGF2R Missense_Mutation p.P1288L 0.40 tolerated(0.11) benign(0.009) TCGA-FS-A1Z3-06 6 160679627 160679627 C T SLC22A2 Missense_Mutation p.G55R 0.47 deleterious(0.04) benign(0.334) TCGA-FS-A1Z3-06 6 161006150 161006150 C T LPA Missense_Mutation p.G1406E 0.41 tolerated(0.05) probably_damaging(1) TCGA-FS-A1Z3-06 6 161021955 161021955 C T LPA Missense_Mutation p.E1041K 0.38 tolerated(0.13) probably_damaging(0.92) TCGA-FS-A1Z3-06 6 161027681 161027681 G A LPA Silent p.I871I 0.36 TCGA-FS-A1Z3-06 6 161071470 161071470 G A LPA Nonsense_Mutation p.R37* 0.41 TCGA-FS-A1Z3-06 6 161174018 161174018 C T PLG Silent p.R786R 0.38 TCGA-FS-A1Z3-06 6 162394441 162394441 G A PARK2 Silent p.F209F 0.41 TCGA-FS-A1Z3-06 6 168434624 168434624 G A KIF25 Missense_Mutation p.G77E 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 6 168947785 168947785 C T SMOC2 Silent p.S177S 0.41 TCGA-FS-A1Z3-06 6 24278290 24278290 G A DCDC2 Silent p.T303T 0.12 TCGA-FS-A1Z3-06 6 25689443 25689443 G A SCGN Missense_Mutation p.D191N 0.30 tolerated(0.22) benign(0.006) TCGA-FS-A1Z3-06 6 26108327 26108327 C T HIST1H1T 5'UTR 0.29 TCGA-FS-A1Z3-06 6 26247008 26247008 C T HIST1H4G Silent p.V66V 0.32 TCGA-FS-A1Z3-06 6 26273498 26273498 G C HIST1H2BI Missense_Mutation p.V99L 0.32 tolerated_low_confidence(0.05) benign(0.041) TCGA-FS-A1Z3-06 6 27222581 27222581 G A PRSS16 Silent p.Q420Q 0.37 TCGA-FS-A1Z3-06 6 28474150 28474150 G A GPX6 Missense_Mutation p.P100S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FS-A1Z3-06 6 28540300 28540300 C T SCAND3 Silent p.K1122K 0.21 TCGA-FS-A1Z3-06 6 29054102 29054102 G A OR2B3 Silent p.I308I 0.29 TCGA-FS-A1Z3-06 6 29141418 29141418 G A OR2J2 Missense_Mutation p.M2I 0.21 deleterious(0.01) benign(0.011) TCGA-FS-A1Z3-06 6 29395394 29395394 C T OR11A1 Missense_Mutation p.E9K 0.31 tolerated(0.15) benign(0.001) TCGA-FS-A1Z3-06 6 30131648 30131648 G A TRIM15 Missense_Mutation p.E63K 0.31 tolerated(1) benign(0.005) TCGA-FS-A1Z3-06 6 32006998 32006998 G A CYP21A2 Silent p.V140V 0.28 TCGA-FS-A1Z3-06 6 32025933 32025933 G A TNXB Missense_Mutation p.T2576I 0.26 benign(0.019) TCGA-FS-A1Z3-06 6 32035732 32035732 C T TNXB Missense_Mutation p.E2084K 0.28 probably_damaging(0.981) TCGA-FS-A1Z3-06 6 32170079 32170079 C T NOTCH4 Missense_Mutation p.G1177R 0.25 tolerated(0.06) probably_damaging(0.965) TCGA-FS-A1Z3-06 6 32170080 32170080 C T NOTCH4 Silent p.K1176K 0.25 TCGA-FS-A1Z3-06 6 32827225 32827225 C T PSMB9 Silent p.V192V 0.58 TCGA-FS-A1Z3-06 6 33288188 33288188 T A DAXX Missense_Mutation p.D407V 0.25 tolerated(0.05) possibly_damaging(0.765) TCGA-FS-A1Z3-06 6 33288714 33288714 G A DAXX Missense_Mutation p.P280S 0.29 tolerated(0.27) benign(0.37) TCGA-FS-A1Z3-06 6 33693363 33693363 T G IP6K3 Missense_Mutation p.Q207P 0.29 tolerated(0.38) benign(0.006) TCGA-FS-A1Z3-06 6 33990591 33990591 G A GRM4 3'UTR 0.16 TCGA-FS-A1Z3-06 6 34101037 34101037 C T GRM4 Silent p.L79L 0.26 TCGA-FS-A1Z3-06 6 348904 348904 C T DUSP22 Intron 0.32 TCGA-FS-A1Z3-06 6 35086152 35086152 T C TCP11 Missense_Mutation p.N482S 0.31 tolerated(1) benign(0.023) TCGA-FS-A1Z3-06 6 35604866 35604866 C T FKBP5 Missense_Mutation p.G59R 0.17 deleterious(0) probably_damaging(0.989) TCGA-FS-A1Z3-06 6 35706282 35706282 G A ARMC12 Missense_Mutation p.R171K 0.27 tolerated(0.15) benign(0.075) TCGA-FS-A1Z3-06 6 37403511 37403511 C T CMTR1 Missense_Mutation p.P36S 0.23 tolerated_low_confidence(0.54) benign(0) TCGA-FS-A1Z3-06 6 38877314 38877314 C T DNAH8 Silent p.A2961A 0.16 TCGA-FS-A1Z3-06 6 39040784 39040784 C T GLP1R Missense_Mutation p.S219F 0.24 deleterious(0) possibly_damaging(0.882) TCGA-FS-A1Z3-06 6 39284183 39284183 G A KCNK16 Intron 0.27 TCGA-FS-A1Z3-06 6 39856456 39856456 T C DAAM2 Silent p.L688L 0.32 TCGA-FS-A1Z3-06 6 40360360 40360360 G A LRFN2 Silent p.A564A 0.29 TCGA-FS-A1Z3-06 6 41566642 41566642 G A FOXP4 Missense_Mutation p.E671K 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1Z3-06 6 42833144 42833144 C T GLTSCR1L Missense_Mutation p.S1067F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 6 42852397 42852397 C T RPL7L1 Missense_Mutation p.R111C 0.25 tolerated(0.07) benign(0.169) TCGA-FS-A1Z3-06 6 43023662 43023662 G A MRPL2 Missense_Mutation p.R202W 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-FS-A1Z3-06 6 43146564 43146564 C T SRF Silent p.L459L 0.58 TCGA-FS-A1Z3-06 6 43273533 43273533 G A CRIP3 3'UTR 0.29 TCGA-FS-A1Z3-06 6 43418634 43418634 C T DLK2 Silent p.G265G 0.34 TCGA-FS-A1Z3-06 6 43516013 43516013 G A XPO5 Missense_Mutation p.S682F 0.33 deleterious(0) probably_damaging(0.968) TCGA-FS-A1Z3-06 6 43592649 43592649 G A GTPBP2 Missense_Mutation p.L286F 0.26 deleterious(0.01) benign(0.388) TCGA-FS-A1Z3-06 6 44310780 44310780 G A SPATS1 5'UTR 0.48 TCGA-FS-A1Z3-06 6 46656706 46656706 G A TDRD6 Missense_Mutation p.E281K 0.31 deleterious(0.01) possibly_damaging(0.804) TCGA-FS-A1Z3-06 6 46660692 46660692 A G TDRD6 Silent p.E1609E 0.44 TCGA-FS-A1Z3-06 6 46826469 46826469 G A GPR116 Silent p.I1057I 0.32 TCGA-FS-A1Z3-06 6 4892079 4892079 C T CDYL Missense_Mutation p.H53Y 0.27 tolerated(0.07) possibly_damaging(0.844) TCGA-FS-A1Z3-06 6 52616499 52616499 T C GSTA2 Missense_Mutation p.K141R 0.50 tolerated(0.22) benign(0.03) TCGA-FS-A1Z3-06 6 54804701 54804701 C T FAM83B Missense_Mutation p.S311F 0.43 deleterious(0) probably_damaging(0.987) TCGA-FS-A1Z3-06 6 55198719 55198719 G A GFRAL Missense_Mutation p.G98E 0.40 tolerated(0.07) possibly_damaging(0.882) TCGA-FS-A1Z3-06 6 5545488 5545488 C T FARS2 Missense_Mutation p.P327L 0.27 deleterious(0) probably_damaging(0.97) TCGA-FS-A1Z3-06 6 62604664 62604664 G A KHDRBS2 Missense_Mutation p.T229I 0.40 tolerated(0.13) possibly_damaging(0.462) TCGA-FS-A1Z3-06 6 74073403 74073403 T C KHDC3L Silent p.R158R 0.40 TCGA-FS-A1Z3-06 6 7584130 7584130 G A DSP Missense_Mutation p.G2212E 0.27 probably_damaging(1) TCGA-FS-A1Z3-06 6 87725215 87725215 C T HTR1E Nonsense_Mutation p.Q55* 0.45 TCGA-FS-A1Z3-06 6 87971086 87971086 C T ZNF292 Missense_Mutation p.S2580F 0.39 deleterious(0) possibly_damaging(0.836) TCGA-FS-A1Z3-06 6 91228254 91228254 C T MAP3K7 Missense_Mutation p.E518K 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A1Z3-06 7 100373159 100373159 G A ZAN Missense_Mutation p.D1996N 0.52 unknown(0) TCGA-FS-A1Z3-06 7 100403258 100403258 G T EPHB4 Missense_Mutation p.S848Y 0.45 deleterious(0.02) benign(0.035) TCGA-FS-A1Z3-06 7 100405170 100405170 G A EPHB4 Silent p.L717L 0.42 TCGA-FS-A1Z3-06 7 100678637 100678637 G A MUC17 Missense_Mutation p.E1314K 0.37 unknown(0) TCGA-FS-A1Z3-06 7 100684128 100684128 C T MUC17 Missense_Mutation p.S3144L 0.39 probably_damaging(0.942) TCGA-FS-A1Z3-06 7 102878237 102878237 G A DPY19L2P2 RNA 0.42 TCGA-FS-A1Z3-06 7 103629630 103629630 G A RELN Silent p.S58S 0.28 TCGA-FS-A1Z3-06 7 114619749 114619749 C T MDFIC Nonsense_Mutation p.Q245* 0.32 TCGA-FS-A1Z3-06 7 11676579 11676579 C T THSD7A Missense_Mutation p.G67D 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 7 117864914 117864914 G A ANKRD7 Silent p.R10R 0.37 TCGA-FS-A1Z3-06 7 119914668 119914668 C T KCND2 5'UTR 0.38 TCGA-FS-A1Z3-06 7 119914669 119914669 C T KCND2 5'UTR 0.38 TCGA-FS-A1Z3-06 7 120387737 120387737 G A KCND2 Missense_Mutation p.R573Q 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.862) TCGA-FS-A1Z3-06 7 120590960 120590960 C T ING3 Silent p.L4L 0.37 TCGA-FS-A1Z3-06 7 122033335 122033335 G A CADPS2 Missense_Mutation p.P975S 0.46 tolerated(0.15) benign(0.046) TCGA-FS-A1Z3-06 7 123264794 123264794 G A ASB15 Missense_Mutation p.G208E 0.24 tolerated(0.7) benign(0.065) TCGA-FS-A1Z3-06 7 123346839 123346839 A C WASL Missense_Mutation p.F98L 0.33 tolerated(0.44) unknown(0) TCGA-FS-A1Z3-06 7 129962508 129962508 C T CPA4 Missense_Mutation p.L420F 0.42 tolerated(0.14) benign(0.005) TCGA-FS-A1Z3-06 7 135418800 135418800 C T FAM180A Missense_Mutation p.A149T 0.51 tolerated(0.11) possibly_damaging(0.904) TCGA-FS-A1Z3-06 7 138764314 138764314 G A ZC3HAV1 Missense_Mutation p.S458L 0.35 tolerated(0.1) possibly_damaging(0.879) TCGA-FS-A1Z3-06 7 139724587 139724587 A G PARP12 Missense_Mutation p.F627L 0.27 deleterious(0.04) probably_damaging(0.964) TCGA-FS-A1Z3-06 7 139818971 139818971 G A KDM7A Silent p.F396F 0.39 TCGA-FS-A1Z3-06 7 140301428 140301428 G A DENND2A Missense_Mutation p.S257F 0.38 tolerated(0.28) benign(0.035) TCGA-FS-A1Z3-06 7 141752674 141752674 G A MGAM Missense_Mutation p.A1017T 0.50 tolerated(0.15) possibly_damaging(0.901) TCGA-FS-A1Z3-06 7 144097322 144097322 C A NOBOX Missense_Mutation p.G310W 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 7 146741005 146741005 C T CNTNAP2 Missense_Mutation p.P137S 0.40 tolerated(0.76) benign(0.028) TCGA-FS-A1Z3-06 7 150269450 150269450 G A GIMAP4 Missense_Mutation p.E98K 0.41 tolerated(0.07) benign(0.102) TCGA-FS-A1Z3-06 7 151265878 151265878 G A PRKAG2 Missense_Mutation p.P386L 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-FS-A1Z3-06 7 154876071 154876071 C T HTR5A Silent p.P316P 0.43 TCGA-FS-A1Z3-06 7 15651992 15651992 G A MEOX2 3'UTR 0.31 TCGA-FS-A1Z3-06 7 156589167 156589167 G A LMBR1 Silent p.S113S 0.31 TCGA-FS-A1Z3-06 7 156589168 156589168 G A LMBR1 Missense_Mutation p.S113F 0.31 tolerated(1) benign(0.092) TCGA-FS-A1Z3-06 7 158456922 158456922 G A NCAPG2 Missense_Mutation p.P590L 0.46 tolerated(0.32) benign(0) TCGA-FS-A1Z3-06 7 16745835 16745835 T C BZW2 3'UTR 0.25 TCGA-FS-A1Z3-06 7 16745837 16745837 C A BZW2 3'UTR 0.27 TCGA-FS-A1Z3-06 7 20706381 20706381 G A ABCB5 Intron 0.29 TCGA-FS-A1Z3-06 7 2552877 2552877 G A LFNG Nonsense_Mutation p.W45* 0.13 TCGA-FS-A1Z3-06 7 2740300 2740300 A G AMZ1 Missense_Mutation p.E72G 0.08 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z3-06 7 28547243 28547243 C T CREB5 Missense_Mutation p.P60L 0.59 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 7 31614327 31614327 G A CCDC129 Missense_Mutation p.R216Q 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 7 32091189 32091189 C T PDE1C Intron 0.27 TCGA-FS-A1Z3-06 7 33014864 33014864 C T FKBP9 Silent p.D146D 0.42 TCGA-FS-A1Z3-06 7 34192749 34192749 G A BMPER Missense_Mutation p.G641E 0.43 deleterious(0) possibly_damaging(0.78) TCGA-FS-A1Z3-06 7 34724175 34724175 G A NPSR1 Silent p.L53L 0.38 TCGA-FS-A1Z3-06 7 35130022 35130022 C T DPY19L2P1 RNA 0.33 TCGA-FS-A1Z3-06 7 36324392 36324392 A C EEPD1 Missense_Mutation p.K380T 0.47 tolerated(0.1) benign(0.012) TCGA-FS-A1Z3-06 7 36570032 36570032 A C AOAH Missense_Mutation p.F505C 0.32 tolerated(0.07) benign(0.071) TCGA-FS-A1Z3-06 7 38765824 38765824 G A VPS41 3'UTR 0.40 TCGA-FS-A1Z3-06 7 43484277 43484277 G A HECW1 Silent p.E502E 0.50 TCGA-FS-A1Z3-06 7 44259723 44259723 C T CAMK2B Missense_Mutation p.D647N 0.33 deleterious_low_confidence(0.03) benign(0.188) TCGA-FS-A1Z3-06 7 44619144 44619144 G A TMED4 Silent p.L206L 0.42 TCGA-FS-A1Z3-06 7 45957021 45957021 C T IGFBP3 Missense_Mutation p.E147K 0.46 deleterious(0.03) possibly_damaging(0.889) TCGA-FS-A1Z3-06 7 47814665 47814665 G A PKD1L1 3'UTR 0.37 TCGA-FS-A1Z3-06 7 48068433 48068433 C T SUN3 Missense_Mutation p.E35K 0.31 tolerated_low_confidence(0.3) benign(0.025) TCGA-FS-A1Z3-06 7 50605574 50605574 C T DDC Missense_Mutation p.G140E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 7 57528441 57528441 C T ZNF716 Missense_Mutation p.H92Y 0.38 tolerated(0.28) benign(0.002) TCGA-FS-A1Z3-06 7 70800611 70800611 C T WBSCR17 Missense_Mutation p.P105L 0.40 tolerated(0.09) probably_damaging(0.995) TCGA-FS-A1Z3-06 7 72419397 72419398 CC - POM121 3'UTR 0.25 TCGA-FS-A1Z3-06 7 74563955 74563955 C T GTF2IRD2B Missense_Mutation p.R568C 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-FS-A1Z3-06 7 803543 803543 C T HEATR2 Missense_Mutation p.A572V 0.03 tolerated(0.32) benign(0.029) TCGA-FS-A1Z3-06 7 90896122 90896122 G A FZD1 Missense_Mutation p.G643R 0.31 deleterious(0.03) benign(0.1) TCGA-FS-A1Z3-06 7 94293127 94293127 G A PEG10 Missense_Mutation p.D87N 0.47 tolerated(0.05) probably_damaging(0.988) TCGA-FS-A1Z3-06 7 943807 943807 C T ADAP1 Missense_Mutation p.D202N 0.93 deleterious(0.01) possibly_damaging(0.457) TCGA-FS-A1Z3-06 7 99364064 99364064 G A CYP3A4 Silent p.H267H 0.44 TCGA-FS-A1Z3-06 7 99771509 99771509 G A GPC2 Missense_Mutation p.R281C 0.41 deleterious(0) possibly_damaging(0.809) TCGA-FS-A1Z3-06 7 99798497 99798497 G A STAG3 Missense_Mutation p.E656K 0.42 deleterious(0.01) benign(0.299) TCGA-FS-A1Z3-06 8 100108602 100108602 A T VPS13B Silent p.S118S 0.43 TCGA-FS-A1Z3-06 8 10466767 10466767 C T RP1L1 Missense_Mutation p.R1614Q 0.33 unknown(0) TCGA-FS-A1Z3-06 8 104898359 104898359 C T RIMS2 Missense_Mutation p.S511L 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 8 105010432 105010432 C T RIMS2 Intron 0.31 TCGA-FS-A1Z3-06 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1Z3-06 8 106814615 106814615 C T ZFPM2 Missense_Mutation p.P769S 0.25 tolerated(0.07) benign(0.419) TCGA-FS-A1Z3-06 8 107704968 107704968 C T OXR1 Missense_Mutation p.H181Y 0.38 deleterious(0.05) benign(0.003) TCGA-FS-A1Z3-06 8 110454331 110454331 G A PKHD1L1 Missense_Mutation p.G1434R 0.38 tolerated(0.07) benign(0.06) TCGA-FS-A1Z3-06 8 118159343 118159343 C T SLC30A8 Silent p.L74L 0.44 TCGA-FS-A1Z3-06 8 118159376 118159376 G A SLC30A8 Missense_Mutation p.M85I 0.38 tolerated(0.06) possibly_damaging(0.479) TCGA-FS-A1Z3-06 8 121457755 121457755 C T MTBP Silent p.F15F 0.43 TCGA-FS-A1Z3-06 8 124267422 124267422 T A ZHX1 Silent p.A255A 0.44 TCGA-FS-A1Z3-06 8 124267425 124267425 T A ZHX1 Silent p.A254A 0.44 TCGA-FS-A1Z3-06 8 125072502 125072502 C T FER1L6 Missense_Mutation p.R986W 0.54 deleterious(0) probably_damaging(0.972) TCGA-FS-A1Z3-06 8 133769527 133769527 C T TMEM71 Silent p.L18L 0.25 TCGA-FS-A1Z3-06 8 139158293 139158293 C T FAM135B Missense_Mutation p.G1150E 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-FS-A1Z3-06 8 140630866 140630866 C T KCNK9 Missense_Mutation p.E254K 0.50 deleterious(0.01) possibly_damaging(0.703) TCGA-FS-A1Z3-06 8 143928018 143928018 A T GML Missense_Mutation p.E130V 0.26 deleterious(0) probably_damaging(0.967) TCGA-FS-A1Z3-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.43 deleterious(0) probably_damaging(0.933) TCGA-FS-A1Z3-06 8 144946560 144946560 C T EPPK1 Missense_Mutation p.A288T 0.39 possibly_damaging(0.521) TCGA-FS-A1Z3-06 8 145278091 145278091 C T MROH1 Silent p.I432I 0.50 TCGA-FS-A1Z3-06 8 145649477 145649477 G A VPS28 Silent p.H165H 0.35 TCGA-FS-A1Z3-06 8 16025993 16025993 G A MSR1 Nonsense_Mutation p.Q202* 0.26 TCGA-FS-A1Z3-06 8 16026286 16026286 C T MSR1 Missense_Mutation p.S104N 0.44 tolerated(0.11) possibly_damaging(0.517) TCGA-FS-A1Z3-06 8 16035485 16035485 C T MSR1 Missense_Mutation p.D5N 0.29 tolerated(0.32) benign(0.005) TCGA-FS-A1Z3-06 8 17491611 17491611 C T PDGFRL Silent p.I276I 0.46 TCGA-FS-A1Z3-06 8 18413814 18413814 C T PSD3 Missense_Mutation p.E945K 0.41 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 8 18730175 18730175 C T PSD3 Missense_Mutation p.E67K 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1Z3-06 8 22938818 22938818 C T RP11-875O11.2 RNA 0.67 TCGA-FS-A1Z3-06 8 26627906 26627906 C T ADRA1A Silent p.R387R 0.34 TCGA-FS-A1Z3-06 8 28196745 28196745 C T PNOC Silent p.F105F 0.43 TCGA-FS-A1Z3-06 8 3000172 3000172 A T CSMD1 Missense_Mutation p.F2019Y 0.44 probably_damaging(0.997) TCGA-FS-A1Z3-06 8 3205548 3205548 C T CSMD1 Missense_Mutation p.R1147Q 0.50 benign(0.009) TCGA-FS-A1Z3-06 8 3216833 3216833 C T CSMD1 Missense_Mutation p.G1049R 0.44 probably_damaging(1) TCGA-FS-A1Z3-06 8 3253834 3253834 G A CSMD1 Silent p.I825I 0.25 TCGA-FS-A1Z3-06 8 37720489 37720489 A G RAB11FIP1 Missense_Mutation p.L1259P 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1Z3-06 8 39442148 39442148 C T ADAM18 Missense_Mutation p.L3F 0.44 tolerated(0.22) benign(0) TCGA-FS-A1Z3-06 8 55537394 55537394 G A RP1 Missense_Mutation p.D318N 0.32 deleterious(0.03) possibly_damaging(0.572) TCGA-FS-A1Z3-06 8 55537775 55537775 C T RP1 Missense_Mutation p.R445C 0.32 deleterious(0) possibly_damaging(0.719) TCGA-FS-A1Z3-06 8 57354406 57354406 G A PENK Missense_Mutation p.P77S 0.38 tolerated(0.76) benign(0.005) TCGA-FS-A1Z3-06 8 6793510 6793510 C T DEFA4 3'UTR 0.51 TCGA-FS-A1Z3-06 8 69380963 69380963 G A C8orf34 Missense_Mutation p.R215K 0.62 tolerated(0.11) benign(0.16) TCGA-FS-A1Z3-06 8 69633613 69633613 G A C8orf34 Missense_Mutation p.E449K 0.22 tolerated_low_confidence(0.32) benign(0.217) TCGA-FS-A1Z3-06 8 70981488 70981488 T G PRDM14 Missense_Mutation p.H203P 0.40 deleterious(0.04) benign(0.276) TCGA-FS-A1Z3-06 8 73480350 73480350 G A KCNB2 Silent p.G127G 0.41 TCGA-FS-A1Z3-06 8 73848829 73848829 C T KCNB2 Silent p.I413I 0.47 TCGA-FS-A1Z3-06 8 73850420 73850420 G A KCNB2 3'UTR 0.33 TCGA-FS-A1Z3-06 8 73850421 73850421 G A KCNB2 3'UTR 0.33 TCGA-FS-A1Z3-06 8 77765586 77765586 C T ZFHX4 Silent p.I2143I 0.35 TCGA-FS-A1Z3-06 8 86050686 86050686 G A LRRCC1 Missense_Mutation p.R939K 0.30 tolerated(0.06) possibly_damaging(0.829) TCGA-FS-A1Z3-06 8 87242234 87242234 C T SLC7A13 Silent p.T91T 0.34 TCGA-FS-A1Z3-06 8 88885109 88885109 G A DCAF4L2 Missense_Mutation p.P364L 0.44 deleterious(0) possibly_damaging(0.831) TCGA-FS-A1Z3-06 8 88886163 88886163 C T DCAF4L2 Missense_Mutation p.D13N 0.44 tolerated(0.42) benign(0.008) TCGA-FS-A1Z3-06 8 92983035 92983035 G A RUNX1T1 Silent p.L475L 0.46 TCGA-FS-A1Z3-06 8 95869074 95869074 C T INTS8 Missense_Mutation p.R608C 0.40 tolerated(0.12) probably_damaging(0.999) TCGA-FS-A1Z3-06 9 104499664 104499664 G A GRIN3A Missense_Mutation p.P200S 0.74 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 9 105767024 105767024 G A CYLC2 Nonsense_Mutation p.W76* 0.60 TCGA-FS-A1Z3-06 9 107361665 107361665 C T OR13C5 Silent p.V10V 0.71 TCGA-FS-A1Z3-06 9 113275228 113275228 G A SVEP1 Silent p.S427S 0.83 TCGA-FS-A1Z3-06 9 119188178 119188178 C T ASTN2 Silent p.K1273K 0.89 TCGA-FS-A1Z3-06 9 119770425 119770425 G A ASTN2 Missense_Mutation p.L462F 0.72 tolerated(0.07) unknown(0) TCGA-FS-A1Z3-06 9 125240122 125240122 G A OR1J1 Silent p.F28F 0.69 TCGA-FS-A1Z3-06 9 125486805 125486805 C T OR1L4 Silent p.F179F 0.43 TCGA-FS-A1Z3-06 9 125865544 125865544 C T RABGAP1 3'UTR 0.61 TCGA-FS-A1Z3-06 9 12698628 12698628 T G TYRP1 Missense_Mutation p.Y296D 0.62 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z3-06 9 128692114 128692114 C T PBX3 Missense_Mutation p.L233F 0.69 deleterious(0.04) benign(0.424) TCGA-FS-A1Z3-06 9 133769000 133769000 T C QRFP Missense_Mutation p.T76A 0.70 tolerated(0.98) benign(0) TCGA-FS-A1Z3-06 9 133948193 133948193 C T LAMC3 Silent p.L1130L 0.88 TCGA-FS-A1Z3-06 9 136501635 136501635 C T DBH Missense_Mutation p.P48S 0.88 deleterious(0.05) possibly_damaging(0.493) TCGA-FS-A1Z3-06 9 139379478 139379478 C T C9orf163 Missense_Mutation p.S193F 0.56 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FS-A1Z3-06 9 139379479 139379479 C T C9orf163 Silent p.S193S 0.44 TCGA-FS-A1Z3-06 9 15189610 15189610 G A TTC39B Missense_Mutation p.H399Y 0.72 tolerated(0.11) possibly_damaging(0.53) TCGA-FS-A1Z3-06 9 21166642 21166642 G A IFNA21 5'UTR 0.67 TCGA-FS-A1Z3-06 9 33364754 33364754 C T NFX1 Silent p.L1007L 0.90 TCGA-FS-A1Z3-06 9 34662354 34662354 C A CCL27 Missense_Mutation p.D44Y 0.88 deleterious(0.02) possibly_damaging(0.45) TCGA-FS-A1Z3-06 9 35370328 35370328 C T UNC13B Missense_Mutation p.L410F 0.70 tolerated(0.21) probably_damaging(0.999) TCGA-FS-A1Z3-06 9 36171103 36171103 C T CCIN Missense_Mutation p.T535I 0.83 tolerated(0.09) benign(0.001) TCGA-FS-A1Z3-06 9 36390574 36390574 G A RNF38 Missense_Mutation p.P18S 0.77 deleterious_low_confidence(0.02) benign(0.004) TCGA-FS-A1Z3-06 9 39100114 39100114 C T CNTNAP3 Missense_Mutation p.G930E 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 9 39103850 39103850 G A CNTNAP3 Silent p.F809F 0.48 TCGA-FS-A1Z3-06 9 69423493 69423493 G A ANKRD20A4 Missense_Mutation p.E597K 0.48 deleterious(0.01) possibly_damaging(0.85) TCGA-FS-A1Z3-06 9 77277428 77277428 C T RORB Silent p.I266I 0.79 TCGA-FS-A1Z3-06 9 84605856 84605856 C T SPATA31D1 Silent p.S157S 0.70 TCGA-FS-A1Z3-06 9 90501213 90501213 C T SPATA31E1 Missense_Mutation p.P604L 0.68 tolerated(0.36) benign(0.119) TCGA-FS-A1Z3-06 9 95094460 95094460 T C CENPP Missense_Mutation p.F39S 0.89 tolerated(0.12) benign(0.307) TCGA-FS-A1Z3-06 9 95277286 95277286 C T ECM2 Silent p.K227K 0.76 TCGA-FS-A1Z3-06 X 100625006 100625006 C T BTK Nonsense_Mutation p.W124* 0.83 TCGA-FS-A1Z3-06 X 107431128 107431128 C T COL4A6 Missense_Mutation p.E574K 0.74 benign(0.033) TCGA-FS-A1Z3-06 X 107814658 107814658 C T COL4A5 Missense_Mutation p.P134S 0.70 unknown(0) TCGA-FS-A1Z3-06 X 114357710 114357710 C T LRCH2 Missense_Mutation p.G632E 0.92 tolerated(0.58) possibly_damaging(0.878) TCGA-FS-A1Z3-06 X 117079508 117079508 C T KLHL13 Missense_Mutation p.M46I 0.62 tolerated_low_confidence(0.07) benign(0.019) TCGA-FS-A1Z3-06 X 117744354 117744354 G A DOCK11 Silent p.V1023V 0.84 TCGA-FS-A1Z3-06 X 118123394 118123394 T C LONRF3 Silent p.C361C 0.74 TCGA-FS-A1Z3-06 X 123518570 123518570 G A TENM1 Missense_Mutation p.L2071F 0.78 deleterious(0.02) possibly_damaging(0.825) TCGA-FS-A1Z3-06 X 125685552 125685552 C T DCAF12L1 Missense_Mutation p.R347Q 0.84 tolerated(0.05) benign(0.042) TCGA-FS-A1Z3-06 X 125686156 125686156 C T DCAF12L1 Missense_Mutation p.D146N 0.75 tolerated(0.53) benign(0.001) TCGA-FS-A1Z3-06 X 130438066 130438066 C T IGSF1 5'UTR 0.69 TCGA-FS-A1Z3-06 X 131762479 131762479 G A HS6ST2 Silent p.F570F 0.68 TCGA-FS-A1Z3-06 X 134990307 134990307 G A SAGE1 Missense_Mutation p.D407N 0.77 tolerated(0.62) possibly_damaging(0.908) TCGA-FS-A1Z3-06 X 138828016 138828016 C T ATP11C Missense_Mutation p.M946I 0.80 deleterious(0.04) benign(0.027) TCGA-FS-A1Z3-06 X 140335659 140335659 A T SPANXC Silent p.P95P 0.22 TCGA-FS-A1Z3-06 X 140994128 140994128 C T MAGEC1 Missense_Mutation p.S313F 0.67 tolerated_low_confidence(0.14) unknown(0) TCGA-FS-A1Z3-06 X 142795383 142795383 C T SPANXN2 Missense_Mutation p.D99N 0.71 deleterious(0.04) unknown(0) TCGA-FS-A1Z3-06 X 151123209 151123209 G A GABRE Silent p.F495F 0.62 TCGA-FS-A1Z3-06 X 151820083 151820083 C T GABRQ Silent p.I332I 0.75 TCGA-FS-A1Z3-06 X 151821280 151821280 C T GABRQ Missense_Mutation p.P479S 0.77 tolerated(0.05) probably_damaging(0.97) TCGA-FS-A1Z3-06 X 151900189 151900189 G A MAGEA12 Silent p.I204I 0.80 TCGA-FS-A1Z3-06 X 151900710 151900710 G A MAGEA12 Missense_Mutation p.P31S 0.74 tolerated(0.21) possibly_damaging(0.733) TCGA-FS-A1Z3-06 X 152014865 152014865 C T NSDHL 5'UTR 0.73 TCGA-FS-A1Z3-06 X 16170504 16170504 C T GRPR Silent p.S297S 0.81 TCGA-FS-A1Z3-06 X 18278362 18278362 G A SCML2 Missense_Mutation p.S333L 0.77 tolerated(0.08) benign(0.004) TCGA-FS-A1Z3-06 X 23929948 23929948 T A CXorf58 Missense_Mutation p.L64H 0.55 deleterious(0) probably_damaging(1) TCGA-FS-A1Z3-06 X 27840366 27840366 G A MAGEB10 Missense_Mutation p.E315K 0.88 tolerated(0.1) possibly_damaging(0.542) TCGA-FS-A1Z3-06 X 2947360 2947360 C T ARSH Silent p.F424F 0.84 TCGA-FS-A1Z3-06 X 2947361 2947361 C T ARSH Missense_Mutation p.H425Y 0.84 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z3-06 X 3002495 3002495 G A ARSF Silent p.G206G 0.80 TCGA-FS-A1Z3-06 X 31462650 31462650 G A DMD Missense_Mutation p.P3011L 0.66 possibly_damaging(0.859) TCGA-FS-A1Z3-06 X 3228960 3228960 C T MXRA5 Silent p.R2428R 0.72 TCGA-FS-A1Z3-06 X 34150245 34150245 C T FAM47A Missense_Mutation p.V51M 0.73 deleterious(0.04) probably_damaging(0.983) TCGA-FS-A1Z3-06 X 35974140 35974140 T C CXorf22 Missense_Mutation p.F413L 0.74 tolerated(0.07) benign(0.2) TCGA-FS-A1Z3-06 X 41205854 41205854 A G DDX3X Missense_Mutation p.T532A 0.80 deleterious(0) possibly_damaging(0.869) TCGA-FS-A1Z3-06 X 47918844 47918844 G A ZNF630 Silent p.S329S 0.69 TCGA-FS-A1Z3-06 X 52682454 52682454 C T SSX7 Silent p.K23K 0.73 TCGA-FS-A1Z3-06 X 52825240 52825240 C T SPANXN5 3'UTR 0.80 TCGA-FS-A1Z3-06 X 54497798 54497798 G A FGD1 Missense_Mutation p.P144S 0.66 tolerated_low_confidence(0.14) benign(0.234) TCGA-FS-A1Z3-06 X 69385761 69385761 G A IGBP1 Missense_Mutation p.R317K 0.91 tolerated(0.91) benign(0.004) TCGA-FS-A1Z3-06 X 69459767 69459767 G A AWAT1 Missense_Mutation p.R272K 0.89 tolerated(0.55) benign(0.003) TCGA-FS-A1Z3-06 X 72433704 72433704 C T NAP1L2 Missense_Mutation p.D209N 0.87 tolerated(0.39) possibly_damaging(0.802) TCGA-FS-A1Z3-06 X 73046766 73046766 C T XIST RNA 0.74 TCGA-FS-A1Z3-06 X 84362528 84362528 C T SATL1 Missense_Mutation p.E483K 0.74 tolerated(0.09) possibly_damaging(0.879) TCGA-FS-A1Z3-06 X 99662304 99662304 G A PCDH19 Missense_Mutation p.P431L 0.77 deleterious(0) probably_damaging(1) TCGA-FS-A1Z4-06 10 61836092 61836092 G A ANK3 Missense_Mutation p.P1516L 0.19 benign(0.055) TCGA-FS-A1Z4-06 10 64911939 64911939 C T NRBF2 Nonsense_Mutation p.Q49* 0.11 TCGA-FS-A1Z4-06 10 98170225 98170225 C A TLL2 Missense_Mutation p.G352V 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1Z4-06 11 121430338 121430338 G A SORL1 Missense_Mutation p.M1007I 0.09 deleterious(0.04) benign(0.015) TCGA-FS-A1Z4-06 11 72423666 72423666 C T ARAP1 Intron 0.17 TCGA-FS-A1Z4-06 11 8752646 8752646 C T ST5 Missense_Mutation p.R64Q 0.08 tolerated_low_confidence(0.33) benign(0.002) TCGA-FS-A1Z4-06 12 123782672 123782672 C T SBNO1 Missense_Mutation p.G1298S 0.16 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z4-06 12 52914008 52914008 G A KRT5 Missense_Mutation p.P25S 0.25 tolerated(0.14) possibly_damaging(0.641) TCGA-FS-A1Z4-06 12 53696978 53696978 G A C12orf10 Splice_Site p.X163_splice 0.17 TCGA-FS-A1Z4-06 13 114009759 114009759 G A GRTP1 Silent p.H73H 0.11 TCGA-FS-A1Z4-06 13 32802741 32802741 T C FRY Silent p.A1785A 0.09 TCGA-FS-A1Z4-06 13 41706580 41706580 T C KBTBD6 Missense_Mutation p.K23R 0.18 tolerated_low_confidence(0.34) benign(0.005) TCGA-FS-A1Z4-06 13 52639739 52639739 G A NEK5 Missense_Mutation p.S644F 0.20 tolerated(0.73) benign(0) TCGA-FS-A1Z4-06 14 21870235 21870235 T A CHD8 Missense_Mutation p.I1315F 0.11 deleterious(0) probably_damaging(0.986) TCGA-FS-A1Z4-06 14 57075882 57075882 C T TMEM260 Missense_Mutation p.P232L 0.05 deleterious(0) probably_damaging(0.945) TCGA-FS-A1Z4-06 14 63174914 63174914 G A KCNH5 Missense_Mutation p.P760L 0.12 deleterious(0.04) benign(0.018) TCGA-FS-A1Z4-06 15 43817052 43817052 A G MAP1A Silent p.Q1127Q 0.29 TCGA-FS-A1Z4-06 16 336416 336416 G A PDIA2 Missense_Mutation p.G395S 0.12 deleterious(0.04) possibly_damaging(0.616) TCGA-FS-A1Z4-06 17 7480012 7480012 T A EIF4A1 Splice_Site p.X172_splice 0.23 TCGA-FS-A1Z4-06 17 7579399 7579399 A - TP53 Frame_Shift_Del p.V97Sfs*26 0.15 TCGA-FS-A1Z4-06 19 11508131 11508131 C T RGL3 Missense_Mutation p.R636Q 0.12 deleterious(0.01) unknown(0) TCGA-FS-A1Z4-06 19 14748943 14748943 C T EMR3 Nonsense_Mutation p.W486* 0.15 TCGA-FS-A1Z4-06 19 39899381 39899381 A G ZFP36 3'UTR 0.17 TCGA-FS-A1Z4-06 19 45570681 45570681 C T CLASRP Missense_Mutation p.S499F 0.18 deleterious_low_confidence(0.04) unknown(0) TCGA-FS-A1Z4-06 19 56243679 56243679 C A NLRP9 Missense_Mutation p.M506I 0.18 tolerated(0.25) benign(0.021) TCGA-FS-A1Z4-06 1 115221134 115221134 G A AMPD1 Silent p.I337I 0.20 TCGA-FS-A1Z4-06 1 152280145 152280145 C T FLG Missense_Mutation p.G2406E 0.09 benign(0.082) TCGA-FS-A1Z4-06 1 157648425 157648425 G A FCRL3 3'UTR 0.15 TCGA-FS-A1Z4-06 1 207195689 207195689 G A C1orf116 Silent p.L474L 0.12 TCGA-FS-A1Z4-06 1 207195703 207195703 C T C1orf116 Missense_Mutation p.S469N 0.10 deleterious(0.03) benign(0.324) TCGA-FS-A1Z4-06 1 34276407 34276407 G A CSMD2 Silent p.F421F 0.26 TCGA-FS-A1Z4-06 1 45977053 45977054 - T PRDX1 Frame_Shift_Ins p.T183Nfs*5 0.13 TCGA-FS-A1Z4-06 20 55012445 55012445 G A CASS4 Missense_Mutation p.E88K 0.27 tolerated(0.35) benign(0.017) TCGA-FS-A1Z4-06 20 8698351 8698351 G A PLCB1 Missense_Mutation p.D457N 0.13 deleterious(0) benign(0.216) TCGA-FS-A1Z4-06 2 107423245 107423245 C T ST6GAL2 Silent p.Q493Q 0.13 TCGA-FS-A1Z4-06 2 113764230 113764230 G A IL36A Silent p.G60G 0.22 TCGA-FS-A1Z4-06 2 141773459 141773459 C T LRP1B Missense_Mutation p.E666K 0.15 possibly_damaging(0.621) TCGA-FS-A1Z4-06 2 149248079 149248079 C T MBD5 Silent p.I1393I 0.17 TCGA-FS-A1Z4-06 2 192701266 192701266 C T SDPR Missense_Mutation p.E221K 0.13 deleterious(0.01) probably_damaging(0.928) TCGA-FS-A1Z4-06 2 196851910 196851910 C T DNAH7 Missense_Mutation p.R545H 0.17 tolerated(0.65) benign(0.016) TCGA-FS-A1Z4-06 2 238940897 238940897 T C UBE2F Splice_Site p.X148_splice 0.19 TCGA-FS-A1Z4-06 2 74719860 74719860 C T TTC31 Missense_Mutation p.L417F 0.21 deleterious(0.04) possibly_damaging(0.786) TCGA-FS-A1Z4-06 3 42728022 42728022 G A KLHL40 Silent p.G304G 0.16 TCGA-FS-A1Z4-06 3 56207504 56207504 C T ERC2 Silent p.T373T 0.12 TCGA-FS-A1Z4-06 3 57651848 57651848 A G DENND6A Splice_Site p.X144_splice 0.14 TCGA-FS-A1Z4-06 4 52779501 52779501 C A DCUN1D4 Missense_Mutation p.L256I 0.15 deleterious(0) probably_damaging(0.996) TCGA-FS-A1Z4-06 4 52779503 52779503 A T DCUN1D4 Silent p.L256L 0.09 TCGA-FS-A1Z4-06 5 13864596 13864596 G A DNAH5 Silent p.L1502L 0.13 TCGA-FS-A1Z4-06 5 148695801 148695801 C T AFAP1L1 Missense_Mutation p.S401F 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-FS-A1Z4-06 5 38881844 38881844 G A OSMR Nonsense_Mutation p.W132* 0.15 TCGA-FS-A1Z4-06 6 1394974 1394974 C T FOXF2 Silent p.D405D 0.09 TCGA-FS-A1Z4-06 8 75756325 75756325 G A PI15 Missense_Mutation p.R128H 0.13 tolerated(1) probably_damaging(0.999) TCGA-FS-A1Z4-06 9 106862421 106862422 - A SMC2 Frame_Shift_Ins p.I179Nfs*13 0.09 TCGA-FS-A1Z4-06 X 140984915 140984915 T G MAGEC3 Missense_Mutation p.D457E 0.22 tolerated(0.15) possibly_damaging(0.784) TCGA-FS-A1Z4-06 X 52825457 52825457 G A SPANXN5 3'UTR 0.15 TCGA-FS-A1Z4-06 X 78010399 78010399 C T LPAR4 Silent p.F11F 0.34 TCGA-FS-A1Z7-06 10 134161711 134161711 C T LRRC27 Silent p.I259I 0.41 TCGA-FS-A1Z7-06 10 15120537 15120537 C T ACBD7 Missense_Mutation p.G87R 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1Z7-06 10 37506734 37506734 G A ANKRD30A Silent p.V1009V 0.50 TCGA-FS-A1Z7-06 10 61828507 61828507 A C ANK3 Silent p.G4044G 0.33 TCGA-FS-A1Z7-06 10 73567455 73567455 G A CDH23 Missense_Mutation p.E591K 0.52 tolerated(0.14) possibly_damaging(0.636) TCGA-FS-A1Z7-06 10 96068343 96068343 C T PLCE1 Nonsense_Mutation p.R1964* 0.40 TCGA-FS-A1Z7-06 10 96484232 96484232 C T CYP2C18 Missense_Mutation p.T364I 0.45 tolerated(0.32) benign(0.224) TCGA-FS-A1Z7-06 10 96748665 96748665 C T CYP2C9 Silent p.S451S 0.43 TCGA-FS-A1Z7-06 11 102643649 102643649 C T MMP10 Silent p.R385R 0.46 TCGA-FS-A1Z7-06 11 1092136 1092136 G A MUC2 Missense_Mutation p.D1319N 0.24 benign(0.216) TCGA-FS-A1Z7-06 11 121461713 121461713 C T SORL1 Missense_Mutation p.S1406L 0.37 tolerated(0.19) benign(0.002) TCGA-FS-A1Z7-06 11 121490524 121490524 G A SORL1 Silent p.P1929P 0.51 TCGA-FS-A1Z7-06 11 34502410 34502410 G A ELF5 Missense_Mutation p.R204W 0.26 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z7-06 11 47712109 47712109 G A AGBL2 Missense_Mutation p.P384S 0.29 deleterious(0) probably_damaging(0.931) TCGA-FS-A1Z7-06 11 55735333 55735333 G A OR10AG1 Silent p.L203L 0.43 TCGA-FS-A1Z7-06 11 56229951 56229951 C T OR5M9 Silent p.R309R 0.47 TCGA-FS-A1Z7-06 11 66191069 66191069 C T NPAS4 Nonsense_Mutation p.Q277* 0.36 TCGA-FS-A1Z7-06 11 66357991 66357991 G A CCDC87 Silent p.A832A 0.42 TCGA-FS-A1Z7-06 11 76796030 76796030 C T CAPN5 Missense_Mutation p.P33L 0.36 tolerated(0.11) possibly_damaging(0.904) TCGA-FS-A1Z7-06 12 119617332 119617332 G A HSPB8 Missense_Mutation p.G72D 0.61 tolerated(0.21) benign(0.042) TCGA-FS-A1Z7-06 12 122748207 122748207 G A VPS33A Missense_Mutation p.R70C 0.58 tolerated(0.17) benign(0.035) TCGA-FS-A1Z7-06 12 123351825 123351825 G A VPS37B Silent p.A232A 0.80 TCGA-FS-A1Z7-06 12 13906478 13906478 C T GRIN2B Silent p.L261L 0.72 TCGA-FS-A1Z7-06 12 21196407 21196407 A T SLCO1B7 Missense_Mutation p.E242D 0.59 tolerated(0.25) benign(0.118) TCGA-FS-A1Z7-06 12 21325643 21325643 G A SLCO1B1 Missense_Mutation p.M48I 0.57 deleterious(0) probably_damaging(0.985) TCGA-FS-A1Z7-06 12 48379519 48379519 C T COL2A1 Missense_Mutation p.G558R 0.58 probably_damaging(0.964) TCGA-FS-A1Z7-06 12 49445878 49445878 G A KMT2D Missense_Mutation p.P530S 0.54 unknown(0) TCGA-FS-A1Z7-06 12 6691339 6691339 A G CHD4 Silent p.L1493L 0.63 TCGA-FS-A1Z7-06 12 68709041 68709041 G A MDM1 Missense_Mutation p.P396S 0.49 tolerated(0.13) possibly_damaging(0.831) TCGA-FS-A1Z7-06 12 8612264 8612264 A C CLEC6A Missense_Mutation p.T65P 0.60 deleterious(0.01) possibly_damaging(0.77) TCGA-FS-A1Z7-06 12 9318777 9318777 C T PZP Missense_Mutation p.R710K 0.59 tolerated(0.82) benign(0.003) TCGA-FS-A1Z7-06 13 114083350 114083350 G A ADPRHL1 Missense_Mutation p.P188L 0.41 deleterious(0) probably_damaging(0.911) TCGA-FS-A1Z7-06 13 19751421 19751421 G A TUBA3C Silent p.I234I 0.48 TCGA-FS-A1Z7-06 13 20763301 20763301 G A GJB2 Silent p.I140I 0.21 TCGA-FS-A1Z7-06 13 22275620 22275620 A G FGF9 3'UTR 0.53 TCGA-FS-A1Z7-06 13 43986164 43986164 C T ENOX1 Silent p.A32A 0.20 TCGA-FS-A1Z7-06 13 95830017 95830017 G A ABCC4 Silent p.L557L 0.41 TCGA-FS-A1Z7-06 14 21025135 21025135 C T RNASE9 Missense_Mutation p.D37N 0.43 tolerated(0.58) probably_damaging(0.981) TCGA-FS-A1Z7-06 15 100332406 100332406 C T AC090825.1 5'Flank 0.19 TCGA-FS-A1Z7-06 15 20488902 20488902 C T CHEK2P2 RNA 0.11 TCGA-FS-A1Z7-06 15 34021120 34021120 G A RYR3 Missense_Mutation p.V2366M 0.48 probably_damaging(0.999) TCGA-FS-A1Z7-06 15 34040399 34040399 G A RYR3 Missense_Mutation p.G2692R 0.33 benign(0.051) TCGA-FS-A1Z7-06 15 38233389 38233389 G A TMCO5A Missense_Mutation p.E143K 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1Z7-06 15 39892957 39892957 C T FSIP1 3'UTR 0.38 TCGA-FS-A1Z7-06 15 39892958 39892958 C T FSIP1 3'UTR 0.38 TCGA-FS-A1Z7-06 15 39910314 39910314 A T FSIP1 Missense_Mutation p.F441I 0.38 tolerated(0.37) benign(0.01) TCGA-FS-A1Z7-06 15 40005658 40005658 A C FSIP1 Missense_Mutation p.M392R 0.32 deleterious(0) possibly_damaging(0.735) TCGA-FS-A1Z7-06 15 40710501 40710501 C T IVD 3'UTR 0.33 TCGA-FS-A1Z7-06 15 43498698 43498698 C T EPB42 Missense_Mutation p.S513N 0.26 tolerated(0.11) benign(0.292) TCGA-FS-A1Z7-06 15 84373227 84373227 G A ADAMTSL3 Silent p.G52G 0.47 TCGA-FS-A1Z7-06 15 86286780 86286780 G A AKAP13 Missense_Mutation p.E2710K 0.44 tolerated(0.1) benign(0.376) TCGA-FS-A1Z7-06 16 31476420 31476420 C T ARMC5 Intron 0.31 TCGA-FS-A1Z7-06 16 83704457 83704457 G A CDH13 Silent p.K435K 0.33 TCGA-FS-A1Z7-06 16 89347448 89347448 G A ANKRD11 Silent p.P1834P 0.30 TCGA-FS-A1Z7-06 16 89761464 89761464 C T CDK10 Silent p.Y306Y 0.42 TCGA-FS-A1Z7-06 17 10351246 10351246 G A MYH4 Silent p.I1618I 0.24 TCGA-FS-A1Z7-06 17 1563755 1563755 G A PRPF8 Missense_Mutation p.H1586Y 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1Z7-06 17 17921914 17921914 G A ATPAF2 Silent p.I273I 0.36 TCGA-FS-A1Z7-06 17 18923163 18923163 C T SLC5A10 Silent p.F532F 0.18 TCGA-FS-A1Z7-06 17 26684704 26684704 C T TMEM199 Missense_Mutation p.S4F 0.24 tolerated_low_confidence(0.08) benign(0.001) TCGA-FS-A1Z7-06 17 33466948 33466948 G T NLE1 Silent p.V100V 0.30 TCGA-FS-A1Z7-06 17 36707463 36707463 G A SRCIN1 Missense_Mutation p.H964Y 0.38 tolerated(0.13) probably_damaging(0.973) TCGA-FS-A1Z7-06 17 4458201 4458201 G A MYBBP1A Silent p.V83V 0.50 TCGA-FS-A1Z7-06 17 62050058 62050058 C T SCN4A Silent p.E48E 0.36 TCGA-FS-A1Z7-06 17 73753115 73753115 G A ITGB4 Silent p.K1715K 0.29 TCGA-FS-A1Z7-06 17 74004113 74004113 C T EVPL Missense_Mutation p.E1725K 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A1Z7-06 17 74094054 74094054 G A EXOC7 Missense_Mutation p.R155C 0.22 tolerated(0.07) benign(0.04) TCGA-FS-A1Z7-06 17 78190938 78190938 G A SGSH Missense_Mutation p.P48S 0.50 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z7-06 17 79166327 79166327 G A AZI1 Silent p.A832A 0.32 TCGA-FS-A1Z7-06 18 40695504 40695504 G A RIT2 5'UTR 0.24 TCGA-FS-A1Z7-06 18 47814100 47814100 C T CXXC1 5'Flank 0.37 TCGA-FS-A1Z7-06 18 63430210 63430210 G A CDH7 Silent p.R44R 0.22 TCGA-FS-A1Z7-06 19 10394278 10394278 C T ICAM1 Silent p.L151L 0.32 TCGA-FS-A1Z7-06 19 16060702 16060702 G A OR10H4 Silent p.R295R 0.36 TCGA-FS-A1Z7-06 19 18096193 18096193 C T KCNN1 Silent p.S330S 0.22 TCGA-FS-A1Z7-06 19 36278332 36278332 C T ARHGAP33 Silent p.S794S 0.33 TCGA-FS-A1Z7-06 19 40172147 40172147 C T AC093063.3 5'Flank 0.42 TCGA-FS-A1Z7-06 19 41703702 41703702 G A CYP2S1 Missense_Mutation p.G121E 0.22 deleterious(0.01) probably_damaging(1) TCGA-FS-A1Z7-06 19 41939227 41939227 G A ATP5SL Silent p.A188A 0.24 TCGA-FS-A1Z7-06 19 42383132 42383132 A C CD79A Missense_Mutation p.H51P 0.27 tolerated(0.11) possibly_damaging(0.611) TCGA-FS-A1Z7-06 19 43372181 43372181 C T PSG1 3'UTR 0.29 TCGA-FS-A1Z7-06 19 48981728 48981728 G A CYTH2 Missense_Mutation p.G331R 0.26 deleterious(0.03) benign(0.329) TCGA-FS-A1Z7-06 19 50912809 50912809 C T POLD1 Silent p.P680P 0.36 TCGA-FS-A1Z7-06 19 52249733 52249733 C T FPR1 Missense_Mutation p.G172E 0.40 deleterious(0.05) possibly_damaging(0.708) TCGA-FS-A1Z7-06 19 55298072 55298072 C T KIR2DL1 3'Flank 0.31 TCGA-FS-A1Z7-06 19 57325501 57325501 C T PEG3 Missense_Mutation p.G1437R 0.25 tolerated(0.08) benign(0) TCGA-FS-A1Z7-06 19 58565318 58565318 C T ZSCAN1 Missense_Mutation p.P376S 0.40 tolerated(0.59) benign(0.227) TCGA-FS-A1Z7-06 19 6897264 6897264 C T EMR1 Missense_Mutation p.P115S 0.25 tolerated(0.46) benign(0.081) TCGA-FS-A1Z7-06 19 9082412 9082412 C T MUC16 Missense_Mutation p.A3135T 0.28 unknown(0) TCGA-FS-A1Z7-06 19 9088132 9088132 G A MUC16 Missense_Mutation p.S1228L 0.30 unknown(0) TCGA-FS-A1Z7-06 19 9090539 9090539 C T MUC16 Missense_Mutation p.G426R 0.20 unknown(0) TCGA-FS-A1Z7-06 1 110301983 110301983 G A EPS8L3 Silent p.D94D 0.18 TCGA-FS-A1Z7-06 1 110301984 110301984 T A EPS8L3 Missense_Mutation p.D94V 0.18 deleterious(0) possibly_damaging(0.866) TCGA-FS-A1Z7-06 1 151112559 151112559 G A SEMA6C Silent p.S42S 0.39 TCGA-FS-A1Z7-06 1 156105739 156105739 C T LMNA Silent p.A328A 0.13 TCGA-FS-A1Z7-06 1 156510631 156510631 C G IQGAP3 Missense_Mutation p.A870P 0.38 deleterious(0.01) possibly_damaging(0.52) TCGA-FS-A1Z7-06 1 158670049 158670049 G A OR6K2 Missense_Mutation p.P132S 0.28 tolerated(0.12) benign(0.099) TCGA-FS-A1Z7-06 1 159799751 159799751 C T SLAMF8 Missense_Mutation p.R46C 0.26 deleterious(0) probably_damaging(0.984) TCGA-FS-A1Z7-06 1 160771793 160771793 G A LY9 Intron 0.31 TCGA-FS-A1Z7-06 1 17945879 17945879 C T ARHGEF10L Missense_Mutation p.S294L 0.35 tolerated(0.25) benign(0.001) TCGA-FS-A1Z7-06 1 179659832 179659832 G A TDRD5 Silent p.V954V 0.24 TCGA-FS-A1Z7-06 1 182835669 182835669 T C DHX9 Missense_Mutation p.F475L 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1Z7-06 1 207697352 207697352 G A CR1 Missense_Mutation p.R295K 0.25 tolerated(0.71) benign(0.066) TCGA-FS-A1Z7-06 1 232943052 232943052 G A MAP10 Silent p.V761V 0.27 TCGA-FS-A1Z7-06 1 43778232 43778232 C T TIE1 Silent p.G629G 0.33 TCGA-FS-A1Z7-06 1 46498298 46498298 G A MAST2 Missense_Mutation p.A1149T 0.34 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-FS-A1Z7-06 1 47398693 47398693 C T CYP4A11 Missense_Mutation p.G417S 0.27 tolerated(0.13) benign(0.12) TCGA-FS-A1Z7-06 1 53558273 53558273 G A SLC1A7 Silent p.I328I 0.21 TCGA-FS-A1Z7-06 1 57489226 57489226 G A DAB1 Silent p.F291F 0.23 TCGA-FS-A1Z7-06 1 6636587 6636587 G A TAS1R1 Missense_Mutation p.G458E 0.25 deleterious(0.01) probably_damaging(0.948) TCGA-FS-A1Z7-06 1 75037969 75037969 C T C1orf173 Missense_Mutation p.G1142E 0.29 tolerated(0.27) probably_damaging(0.99) TCGA-FS-A1Z7-06 1 89637521 89637521 G A GBP7 Missense_Mutation p.A33V 0.25 tolerated(0.07) benign(0.041) TCGA-FS-A1Z7-06 20 29632693 29632693 G A FRG1B Missense_Mutation p.G170R 0.04 deleterious(0) probably_damaging(0.98) TCGA-FS-A1Z7-06 20 30064320 30064320 C T REM1 Silent p.S24S 0.21 TCGA-FS-A1Z7-06 20 40733211 40733211 G A PTPRT Nonsense_Mutation p.Q1180* 0.36 TCGA-FS-A1Z7-06 20 43836998 43836998 G A SEMG1 Missense_Mutation p.E354K 0.19 tolerated(0.31) probably_damaging(0.996) TCGA-FS-A1Z7-06 20 55208508 55208508 G A TFAP2C Missense_Mutation p.G229E 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 20 9561218 9561218 C T PAK7 Silent p.L188L 0.17 TCGA-FS-A1Z7-06 21 30926026 30926026 C T GRIK1 Splice_Site p.X870_splice 0.26 TCGA-FS-A1Z7-06 21 42845326 42845326 G A TMPRSS2 Silent p.V312V 0.28 TCGA-FS-A1Z7-06 22 50721178 50721178 G A PLXNB2 Silent p.P983P 0.38 TCGA-FS-A1Z7-06 2 11332367 11332367 G A ROCK2 Missense_Mutation p.P1357L 0.27 tolerated(0.19) benign(0.045) TCGA-FS-A1Z7-06 2 113593774 113593774 C T IL1B Missense_Mutation p.M11I 0.32 tolerated(0.17) benign(0.055) TCGA-FS-A1Z7-06 2 136545942 136545942 C T LCT Silent p.G1912G 0.32 TCGA-FS-A1Z7-06 2 136566133 136566133 C T LCT Missense_Mutation p.E1262K 0.32 tolerated(0.07) possibly_damaging(0.9) TCGA-FS-A1Z7-06 2 137988803 137988803 A C THSD7B Missense_Mutation p.E638A 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-FS-A1Z7-06 2 141459298 141459298 C T LRP1B Missense_Mutation p.R2140K 0.29 benign(0.067) TCGA-FS-A1Z7-06 2 149226614 149226614 C T MBD5 Missense_Mutation p.P368S 0.27 tolerated(0.1) possibly_damaging(0.803) TCGA-FS-A1Z7-06 2 167133616 167133616 G A SCN9A Silent p.F906F 0.33 TCGA-FS-A1Z7-06 2 179439595 179439595 C T TTN Missense_Mutation p.G23755D 0.16 TCGA-FS-A1Z7-06 2 179439596 179439596 C T TTN Missense_Mutation p.G23755S 0.16 TCGA-FS-A1Z7-06 2 179592993 179592993 C T TTN Missense_Mutation p.E6520K 0.36 TCGA-FS-A1Z7-06 2 179629430 179629430 G A TTN Missense_Mutation p.S3271F 0.23 TCGA-FS-A1Z7-06 2 185801846 185801846 G A ZNF804A Missense_Mutation p.E575K 0.25 tolerated(0.12) benign(0.05) TCGA-FS-A1Z7-06 2 185802576 185802576 G A ZNF804A Missense_Mutation p.R818K 0.27 tolerated(0.11) benign(0.001) TCGA-FS-A1Z7-06 2 193056684 193056684 G A TMEFF2 Silent p.L68L 0.24 TCGA-FS-A1Z7-06 2 214794733 214794733 G A SPAG16 Missense_Mutation p.D422N 0.29 deleterious(0.05) benign(0.269) TCGA-FS-A1Z7-06 2 215891607 215891607 G A ABCA12 Missense_Mutation p.P373S 0.30 tolerated(0.45) benign(0.064) TCGA-FS-A1Z7-06 2 219857884 219857884 G A CRYBA2 Silent p.P5P 0.44 TCGA-FS-A1Z7-06 2 227896870 227896870 G A COL4A4 Missense_Mutation p.P1234S 0.24 unknown(0) TCGA-FS-A1Z7-06 2 227906897 227906897 C T COL4A4 Missense_Mutation p.D1158N 0.23 unknown(0) TCGA-FS-A1Z7-06 2 234366951 234366951 G A DGKD Missense_Mutation p.D868N 0.22 deleterious(0.03) probably_damaging(0.948) TCGA-FS-A1Z7-06 2 234580650 234580650 G A UGT1A9 Missense_Mutation p.E24K 0.19 tolerated(0.11) benign(0.001) TCGA-FS-A1Z7-06 2 240960815 240960815 G A NDUFA10 Missense_Mutation p.P87S 0.21 deleterious(0) probably_damaging(0.992) TCGA-FS-A1Z7-06 2 27276415 27276415 C T AGBL5 Missense_Mutation p.R121C 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 2 79385887 79385887 G A REG3A Missense_Mutation p.P29S 0.36 tolerated(0.92) benign(0.001) TCGA-FS-A1Z7-06 2 80808870 80808870 G A CTNNA2 Missense_Mutation p.E645K 0.26 deleterious(0.01) possibly_damaging(0.547) TCGA-FS-A1Z7-06 2 95481683 95481683 G A ANKRD20A8P RNA 0.32 TCGA-FS-A1Z7-06 3 100489719 100489719 C T ABI3BP Missense_Mutation p.E826K 0.28 deleterious(0.05) possibly_damaging(0.899) TCGA-FS-A1Z7-06 3 107491668 107491668 C T BBX Missense_Mutation p.S367F 0.29 deleterious(0.01) benign(0.004) TCGA-FS-A1Z7-06 3 112289504 112289504 C T SLC35A5 Missense_Mutation p.S116F 0.28 deleterious(0.04) probably_damaging(0.932) TCGA-FS-A1Z7-06 3 121712277 121712277 C T ILDR1 Missense_Mutation p.R440K 0.36 deleterious(0.01) benign(0.152) TCGA-FS-A1Z7-06 3 126268892 126268892 G A C3orf22 Missense_Mutation p.S82F 0.19 tolerated(0.72) probably_damaging(0.919) TCGA-FS-A1Z7-06 3 129233370 129233370 C T IFT122 Silent p.I1093I 0.22 TCGA-FS-A1Z7-06 3 129233371 129233371 C T IFT122 Missense_Mutation p.R1094C 0.21 deleterious(0) probably_damaging(0.995) TCGA-FS-A1Z7-06 3 12983362 12983362 G A IQSEC1 Silent p.V23V 0.44 TCGA-FS-A1Z7-06 3 130292883 130292883 G A COL6A6 Missense_Mutation p.E1021K 0.22 tolerated(0.32) benign(0.009) TCGA-FS-A1Z7-06 3 136141811 136141811 G A STAG1 Missense_Mutation p.P576S 0.14 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 3 13860502 13860502 C T WNT7A Nonsense_Mutation p.W330* 0.31 TCGA-FS-A1Z7-06 3 150883728 150883728 C T MED12L Missense_Mutation p.H485Y 0.36 tolerated(0.18) possibly_damaging(0.653) TCGA-FS-A1Z7-06 3 173998845 173998845 C T NLGN1 Missense_Mutation p.H742Y 0.15 tolerated_low_confidence(0.14) benign(0.196) TCGA-FS-A1Z7-06 3 186038345 186038345 T G DGKG 5'UTR 0.32 TCGA-FS-A1Z7-06 3 189590736 189590736 C T TP63 Missense_Mutation p.T434M 0.28 deleterious(0.02) possibly_damaging(0.628) TCGA-FS-A1Z7-06 3 195517978 195517978 C T MUC4 Missense_Mutation p.G158E 0.24 unknown(0) TCGA-FS-A1Z7-06 3 30880536 30880536 C T GADL1 Missense_Mutation p.E286K 0.42 tolerated(0.52) benign(0.003) TCGA-FS-A1Z7-06 3 37035069 37035069 C T MLH1 Silent p.L11L 0.32 TCGA-FS-A1Z7-06 3 45817382 45817382 C T SLC6A20 Silent p.R151R 0.28 TCGA-FS-A1Z7-06 3 45817383 45817383 C T SLC6A20 Missense_Mutation p.R151K 0.28 deleterious(0.01) possibly_damaging(0.823) TCGA-FS-A1Z7-06 3 48699301 48699301 G A CELSR3 Missense_Mutation p.P256L 0.30 tolerated_low_confidence(0.3) benign(0.001) TCGA-FS-A1Z7-06 3 48699302 48699302 G A CELSR3 Missense_Mutation p.P256S 0.30 tolerated_low_confidence(0.08) benign(0.001) TCGA-FS-A1Z7-06 3 49161487 49161487 G A LAMB2 Silent p.R1157R 0.25 TCGA-FS-A1Z7-06 3 49724853 49724853 C G MST1 Silent p.T138T 0.22 TCGA-FS-A1Z7-06 3 51378772 51378772 G A DOCK3 Missense_Mutation p.E1291K 0.19 deleterious(0) probably_damaging(0.993) TCGA-FS-A1Z7-06 3 71247495 71247495 C T FOXP1 Missense_Mutation p.G13D 0.19 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FS-A1Z7-06 4 119951009 119951009 G A SYNPO2 Missense_Mutation p.R360K 0.54 deleterious(0.02) probably_damaging(0.986) TCGA-FS-A1Z7-06 4 122824207 122824207 C T TRPC3 Missense_Mutation p.D755N 0.50 deleterious(0) probably_damaging(0.928) TCGA-FS-A1Z7-06 4 122835992 122835992 G A TRPC3 Silent p.V428V 0.70 TCGA-FS-A1Z7-06 4 185340707 185340707 G A IRF2 Nonsense_Mutation p.Q35* 0.54 TCGA-FS-A1Z7-06 4 3210517 3210517 C T HTT Missense_Mutation p.S2057F 0.49 probably_damaging(0.998) TCGA-FS-A1Z7-06 4 3210518 3210518 C T HTT Silent p.S2057S 0.49 TCGA-FS-A1Z7-06 4 40351143 40351143 G A CHRNA9 Missense_Mutation p.E204K 0.56 deleterious(0.01) probably_damaging(0.967) TCGA-FS-A1Z7-06 4 52861712 52861712 C T LRRC66 Silent p.G492G 0.55 TCGA-FS-A1Z7-06 4 54968092 54968092 G A GSX2 3'UTR 0.52 TCGA-FS-A1Z7-06 4 68380275 68380275 G A CENPC Missense_Mutation p.P321S 0.65 deleterious(0) probably_damaging(0.992) TCGA-FS-A1Z7-06 4 69334599 69334599 G A TMPRSS11E Silent p.V87V 0.58 TCGA-FS-A1Z7-06 4 79371306 79371306 G A FRAS1 Silent p.G2092G 0.52 TCGA-FS-A1Z7-06 5 110427976 110427976 G A WDR36 5'UTR 0.28 TCGA-FS-A1Z7-06 5 13830149 13830149 G A DNAH5 Missense_Mutation p.L2079F 0.29 possibly_damaging(0.849) TCGA-FS-A1Z7-06 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.30 tolerated_low_confidence(0.09) benign(0.294) TCGA-FS-A1Z7-06 5 140516745 140516745 C T PCDHB5 Missense_Mutation p.R577W 0.18 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-FS-A1Z7-06 5 153085289 153085289 C T GRIA1 Silent p.I505I 0.28 TCGA-FS-A1Z7-06 5 156482347 156482347 C T HAVCR1 Missense_Mutation p.D82N 0.39 tolerated(1) possibly_damaging(0.728) TCGA-FS-A1Z7-06 5 156593105 156593105 C T FAM71B Missense_Mutation p.M25I 0.23 deleterious(0) possibly_damaging(0.496) TCGA-FS-A1Z7-06 5 175998270 175998270 C T CDHR2 Silent p.F124F 0.33 TCGA-FS-A1Z7-06 5 178139426 178139426 G A ZNF354A Nonsense_Mutation p.Q485* 0.27 TCGA-FS-A1Z7-06 5 179745858 179745858 G A GFPT2 Missense_Mutation p.S298L 0.19 tolerated(0.16) benign(0.001) TCGA-FS-A1Z7-06 5 45645616 45645616 G A HCN1 Missense_Mutation p.P174S 0.25 tolerated(0.08) benign(0.009) TCGA-FS-A1Z7-06 5 54642858 54642858 A G SKIV2L2 Missense_Mutation p.K376E 0.23 deleterious(0) possibly_damaging(0.484) TCGA-FS-A1Z7-06 6 106553562 106553562 C T PRDM1 Silent p.A509A 0.34 TCGA-FS-A1Z7-06 6 109867206 109867206 A C AK9 Missense_Mutation p.L1030R 0.24 deleterious(0) possibly_damaging(0.779) TCGA-FS-A1Z7-06 6 136599661 136599661 C G BCLAF1 Missense_Mutation p.V120L 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-FS-A1Z7-06 6 159103998 159103998 G A SYTL3 Missense_Mutation p.R124Q 0.34 deleterious(0.01) benign(0.364) TCGA-FS-A1Z7-06 6 31852325 31852325 G A EHMT2 Missense_Mutation p.S872L 0.34 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z7-06 6 43473343 43473343 C T TJAP1 Missense_Mutation p.P475L 0.27 tolerated(0.2) benign(0.1) TCGA-FS-A1Z7-06 6 47682860 47682860 G A GPR115 Missense_Mutation p.E627K 0.34 tolerated(0.54) benign(0.032) TCGA-FS-A1Z7-06 6 52373036 52373036 C T TRAM2 Missense_Mutation p.R184Q 0.30 tolerated(0.1) possibly_damaging(0.883) TCGA-FS-A1Z7-06 6 55922373 55922373 G A COL21A1 3'UTR 0.45 TCGA-FS-A1Z7-06 6 55929387 55929387 G A COL21A1 Missense_Mutation p.P721S 0.33 deleterious(0.02) benign(0.292) TCGA-FS-A1Z7-06 6 57012155 57012155 T C ZNF451 Silent p.F424F 0.31 TCGA-FS-A1Z7-06 6 99997389 99997389 G A CCNC Missense_Mutation p.A198V 0.16 deleterious(0) possibly_damaging(0.77) TCGA-FS-A1Z7-06 7 100553020 100553020 C T MUC3A Silent p.T555T 0.10 TCGA-FS-A1Z7-06 7 107329560 107329560 C T SLC26A4 Missense_Mutation p.S355F 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 7 136700446 136700446 G A CHRM2 Silent p.E278E 0.22 TCGA-FS-A1Z7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.55 deleterious(0) probably_damaging(0.967) TCGA-FS-A1Z7-06 7 142111483 142111483 C T TRBV5-7 Missense_Mutation p.G85S 0.22 deleterious(0.04) benign(0.31) TCGA-FS-A1Z7-06 7 146829450 146829450 C T CNTNAP2 Silent p.F399F 0.57 TCGA-FS-A1Z7-06 7 148767528 148767528 G A ZNF786 Missense_Mutation p.A779V 0.18 deleterious(0) probably_damaging(0.977) TCGA-FS-A1Z7-06 7 2255796 2255796 G A MAD1L1 Silent p.L269L 0.60 TCGA-FS-A1Z7-06 7 47698748 47698748 G A C7orf65 Nonsense_Mutation p.W126* 0.18 TCGA-FS-A1Z7-06 7 89982131 89982131 A G GTPBP10 Missense_Mutation p.Y12C 0.59 deleterious(0) possibly_damaging(0.832) TCGA-FS-A1Z7-06 8 124340651 124340651 C T ATAD2 Missense_Mutation p.G1216E 0.17 tolerated(0.87) benign(0) TCGA-FS-A1Z7-06 8 2050499 2050499 C T MYOM2 Missense_Mutation p.R888W 0.50 deleterious(0) probably_damaging(0.997) TCGA-FS-A1Z7-06 8 2815309 2815309 G A CSMD1 Silent p.F3241F 0.62 TCGA-FS-A1Z7-06 8 29194636 29194636 G A DUSP4 Silent p.F364F 0.52 TCGA-FS-A1Z7-06 8 3008918 3008918 C T CSMD1 Splice_Site p.X2011_splice 0.20 TCGA-FS-A1Z7-06 8 35579907 35579907 C T UNC5D Missense_Mutation p.R433C 0.47 deleterious(0) probably_damaging(0.939) TCGA-FS-A1Z7-06 8 62479785 62479785 G A ASPH Silent p.V414V 0.27 TCGA-FS-A1Z7-06 8 69005918 69005918 G A PREX2 Missense_Mutation p.G777R 0.45 deleterious_low_confidence(0.03) benign(0.277) TCGA-FS-A1Z7-06 8 87660079 87660079 A G CNGB3 Missense_Mutation p.Y314H 0.40 deleterious(0.01) possibly_damaging(0.844) TCGA-FS-A1Z7-06 9 100975447 100975447 G A TBC1D2 Silent p.H476H 0.26 TCGA-FS-A1Z7-06 9 113243573 113243573 C T SVEP1 Missense_Mutation p.E772K 0.30 benign(0.354) TCGA-FS-A1Z7-06 9 121976091 121976091 G A BRINP1 Intron 0.20 TCGA-FS-A1Z7-06 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.37 tolerated_low_confidence(0.54) benign(0.005) TCGA-FS-A1Z7-06 9 131600340 131600340 G A CCBL1 Missense_Mutation p.S143F 0.26 deleterious(0) benign(0.018) TCGA-FS-A1Z7-06 9 134404537 134404537 G A UCK1 Silent p.S167S 0.35 TCGA-FS-A1Z7-06 9 135932207 135932207 G A GTF3C5 Silent p.R442R 0.24 TCGA-FS-A1Z7-06 9 140711972 140711972 C T EHMT1 Silent p.V1152V 0.29 TCGA-FS-A1Z7-06 9 140901268 140901268 C T CACNA1B Missense_Mutation p.S675L 0.24 deleterious(0) benign(0.029) TCGA-FS-A1Z7-06 9 14722163 14722163 C T CER1 Splice_Site p.X169_splice 0.40 TCGA-FS-A1Z7-06 9 14868761 14868761 A G FREM1 Missense_Mutation p.V72A 0.46 deleterious(0.02) benign(0.435) TCGA-FS-A1Z7-06 9 35555305 35555305 C T RUSC2 Missense_Mutation p.P755S 0.51 tolerated(0.76) benign(0) TCGA-FS-A1Z7-06 9 74300161 74300161 G A TMEM2 Silent p.V1368V 0.35 TCGA-FS-A1Z7-06 9 78848491 78848491 C T PCSK5 Missense_Mutation p.H949Y 0.12 deleterious(0) benign(0.106) TCGA-FS-A1Z7-06 9 79322840 79322840 C T PRUNE2 Missense_Mutation p.M1450I 0.39 tolerated(0.63) benign(0.001) TCGA-FS-A1Z7-06 9 86616475 86616475 G A RMI1 Missense_Mutation p.G192S 0.29 deleterious(0.02) probably_damaging(1) TCGA-FS-A1Z7-06 X 114082716 114082716 C T HTR2C Missense_Mutation p.S167L 0.55 deleterious(0) probably_damaging(0.961) TCGA-FS-A1Z7-06 X 140985027 140985027 C T MAGEC3 Missense_Mutation p.P495S 0.60 tolerated(0.07) probably_damaging(0.977) TCGA-FS-A1Z7-06 X 69283110 69283110 G A OTUD6A Missense_Mutation p.G246R 0.58 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 X 69283111 69283111 G A OTUD6A Missense_Mutation p.G246E 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1Z7-06 X 99917309 99917309 G A SRPX2 Silent p.R100R 0.52 TCGA-FS-A1ZA-06 10 104232643 104232643 C T TMEM180 Silent p.F287F 0.23 TCGA-FS-A1ZA-06 10 105184842 105184842 G A PDCD11 Silent p.L955L 0.59 TCGA-FS-A1ZA-06 10 105762727 105762727 T G SLK Silent p.T597T 0.41 TCGA-FS-A1ZA-06 10 106118351 106118351 G A CCDC147 Missense_Mutation p.D88N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 116207639 116207639 C T ABLIM1 Missense_Mutation p.G579R 0.14 tolerated(0.09) benign(0.248) TCGA-FS-A1ZA-06 10 116615042 116615042 C T FAM160B1 Silent p.F630F 0.12 TCGA-FS-A1ZA-06 10 119013879 119013879 C T SLC18A2 Intron 0.36 TCGA-FS-A1ZA-06 10 120801566 120801566 G A EIF3A Missense_Mutation p.R1156W 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-FS-A1ZA-06 10 124273897 124273897 C T HTRA1 3'UTR 0.63 TCGA-FS-A1ZA-06 10 124345836 124345836 C T DMBT1 Missense_Mutation p.P574S 0.47 tolerated(0.66) unknown(0) TCGA-FS-A1ZA-06 10 124390770 124390770 C T DMBT1 Missense_Mutation p.R1978C 0.39 tolerated(0.07) probably_damaging(0.959) TCGA-FS-A1ZA-06 10 124609993 124609993 G A FAM24B Silent p.L13L 0.41 TCGA-FS-A1ZA-06 10 12866523 12866523 G A CAMK1D Missense_Mutation p.R298Q 0.47 tolerated(0.65) benign(0.028) TCGA-FS-A1ZA-06 10 12867821 12867821 G A CAMK1D Intron 0.20 TCGA-FS-A1ZA-06 10 134646883 134646883 G A TTC40 Missense_Mutation p.R2366C 0.25 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 10 135000048 135000048 C T KNDC1 Missense_Mutation p.S399L 0.35 tolerated(0.13) benign(0.003) TCGA-FS-A1ZA-06 10 135101771 135101771 G A TUBGCP2 Silent p.F556F 0.29 TCGA-FS-A1ZA-06 10 14965057 14965057 G A DCLRE1C Silent p.F328F 0.38 TCGA-FS-A1ZA-06 10 15008576 15008576 G A MEIG1 Missense_Mutation p.E37K 0.18 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 10 18840781 18840781 G A NSUN6 Nonsense_Mutation p.Q348* 0.62 TCGA-FS-A1ZA-06 10 21169768 21169768 G A NEBL Silent p.P145P 0.30 TCGA-FS-A1ZA-06 10 21903788 21903788 G A MLLT10 Missense_Mutation p.E180K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 24784110 24784110 C T KIAA1217 Missense_Mutation p.H607Y 0.35 tolerated(0.34) possibly_damaging(0.695) TCGA-FS-A1ZA-06 10 24909488 24909488 G A ARHGAP21 Nonsense_Mutation p.R446* 0.37 TCGA-FS-A1ZA-06 10 26800816 26800816 C T APBB1IP Silent p.I224I 0.36 TCGA-FS-A1ZA-06 10 30316293 30316293 C T KIAA1462 Nonsense_Mutation p.W928* 0.38 TCGA-FS-A1ZA-06 10 31809203 31809203 C T ZEB1 Missense_Mutation p.P315S 0.52 tolerated(0.44) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 32327101 32327101 G A KIF5B Missense_Mutation p.P163L 0.41 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZA-06 10 37508427 37508427 C T ANKRD30A Silent p.L1207L 0.44 TCGA-FS-A1ZA-06 10 38245986 38245986 C T ZNF25 Nonsense_Mutation p.W67* 0.20 TCGA-FS-A1ZA-06 10 43089567 43089567 A G ZNF33B Silent p.F277F 0.24 TCGA-FS-A1ZA-06 10 43089568 43089568 A T ZNF33B Missense_Mutation p.F277Y 0.22 tolerated(0.54) benign(0.265) TCGA-FS-A1ZA-06 10 50946014 50946014 G A OGDHL Silent p.I832I 0.15 TCGA-FS-A1ZA-06 10 50953880 50953880 C T OGDHL Nonsense_Mutation p.W480* 0.21 TCGA-FS-A1ZA-06 10 51549567 51549567 G A MSMB 5'UTR 0.45 TCGA-FS-A1ZA-06 10 5254636 5254636 G A AKR1C4 Missense_Mutation p.D210N 0.12 tolerated(0.06) benign(0.159) TCGA-FS-A1ZA-06 10 52603792 52603792 G A A1CF Missense_Mutation p.P72S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 54040658 54040658 C T PRKG1 Missense_Mutation p.L505F 0.53 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZA-06 10 54530430 54530430 C T MBL2 Missense_Mutation p.D102N 0.18 tolerated(0.49) possibly_damaging(0.561) TCGA-FS-A1ZA-06 10 5960373 5960373 T A FBXO18 Missense_Mutation p.Y729N 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 61023882 61023882 C T FAM13C Nonsense_Mutation p.W329* 0.41 TCGA-FS-A1ZA-06 10 61029691 61029691 G A FAM13C Silent p.A257A 0.48 TCGA-FS-A1ZA-06 10 61819111 61819111 G A ANK3 Nonsense_Mutation p.R4225* 0.19 TCGA-FS-A1ZA-06 10 61829310 61829310 C T ANK3 Missense_Mutation p.E3777K 0.42 benign(0.038) TCGA-FS-A1ZA-06 10 61831382 61831382 C T ANK3 Missense_Mutation p.G3086E 0.21 benign(0.207) TCGA-FS-A1ZA-06 10 61833542 61833542 G A ANK3 Missense_Mutation p.S2366F 0.47 benign(0.188) TCGA-FS-A1ZA-06 10 61894123 61894123 G A ANK3 Missense_Mutation p.S916F 0.61 probably_damaging(0.962) TCGA-FS-A1ZA-06 10 64159341 64159341 C T ZNF365 Intron 0.27 TCGA-FS-A1ZA-06 10 70405456 70405456 C T TET1 Silent p.S990S 0.33 TCGA-FS-A1ZA-06 10 73405585 73405585 C T CDH23 Intron 0.57 TCGA-FS-A1ZA-06 10 73553033 73553033 C T CDH23 5'Flank 0.34 TCGA-FS-A1ZA-06 10 73590882 73590882 C T PSAP Splice_Site p.X125_splice 0.48 TCGA-FS-A1ZA-06 10 74890626 74890626 G A NUDT13 Missense_Mutation p.V342M 0.43 deleterious(0.01) benign(0.432) TCGA-FS-A1ZA-06 10 76797702 76797702 C T DUPD1 Silent p.P185P 0.59 TCGA-FS-A1ZA-06 10 85909907 85909907 C T GHITM Missense_Mutation p.S230F 0.56 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZA-06 10 85909908 85909908 C T GHITM Silent p.S230S 0.55 TCGA-FS-A1ZA-06 10 92503376 92503376 G A HTR7 Missense_Mutation p.S456F 0.30 tolerated_low_confidence(0.06) benign(0) TCGA-FS-A1ZA-06 10 95443821 95443821 G A FRA10AC1 Silent p.F220F 0.53 TCGA-FS-A1ZA-06 10 95454691 95454691 G A FRA10AC1 Nonsense_Mutation p.Q75* 0.50 TCGA-FS-A1ZA-06 10 95556941 95556941 C T LGI1 Missense_Mutation p.S352L 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 10 95791576 95791576 C T PLCE1 Missense_Mutation p.T258I 0.41 deleterious_low_confidence(0.01) benign(0.002) TCGA-FS-A1ZA-06 10 96044656 96044656 G A PLCE1 Missense_Mutation p.E1657K 0.50 tolerated(0.17) probably_damaging(0.999) TCGA-FS-A1ZA-06 10 96701981 96701981 G A CYP2C9 Missense_Mutation p.E122K 0.31 deleterious(0.05) benign(0.057) TCGA-FS-A1ZA-06 11 113698048 113698048 A G USP28 Missense_Mutation p.F365S 0.62 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 11 115047285 115047285 C T CADM1 Missense_Mutation p.G413E 0.69 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 11 117299400 117299400 T A DSCAML1 Missense_Mutation p.T1996S 0.53 tolerated_low_confidence(0.37) benign(0.002) TCGA-FS-A1ZA-06 11 117351210 117351210 G A DSCAML1 Silent p.F971F 0.80 TCGA-FS-A1ZA-06 11 117691320 117691320 C A FXYD2 Intron 0.50 TCGA-FS-A1ZA-06 11 117691321 117691321 C T FXYD2 Intron 0.54 TCGA-FS-A1ZA-06 11 118373344 118373344 T C KMT2A Missense_Mutation p.V2246A 0.59 benign(0) TCGA-FS-A1ZA-06 11 119001629 119001629 C T HINFP Missense_Mutation p.P126S 0.76 tolerated(0.62) possibly_damaging(0.792) TCGA-FS-A1ZA-06 11 121000383 121000383 C T TECTA Missense_Mutation p.P802S 0.68 tolerated(0.47) benign(0.005) TCGA-FS-A1ZA-06 11 121348870 121348870 C T SORL1 Missense_Mutation p.S149L 0.68 deleterious(0) benign(0.038) TCGA-FS-A1ZA-06 11 123813961 123813961 C T OR6T1 Silent p.L195L 0.68 TCGA-FS-A1ZA-06 11 124135322 124135322 G A OR8G5 Silent p.R200R 0.56 TCGA-FS-A1ZA-06 11 124412706 124412706 G A OR8B12 Missense_Mutation p.P282L 0.62 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-FS-A1ZA-06 11 124757634 124757634 C T ROBO4 Missense_Mutation p.S684N 0.69 tolerated(0.47) benign(0.002) TCGA-FS-A1ZA-06 11 129725643 129725643 G A TMEM45B Silent p.L142L 0.52 TCGA-FS-A1ZA-06 11 129744122 129744122 G A NFRKB Missense_Mutation p.P747L 0.59 deleterious_low_confidence(0.04) unknown(0) TCGA-FS-A1ZA-06 11 17531106 17531106 G A USH1C Missense_Mutation p.P604S 0.58 tolerated_low_confidence(0.06) benign(0.042) TCGA-FS-A1ZA-06 11 198577 198577 C T ODF3 Silent p.L176L 0.41 TCGA-FS-A1ZA-06 11 22391708 22391708 G A SLC17A6 Missense_Mutation p.E339K 0.55 deleterious(0.02) possibly_damaging(0.733) TCGA-FS-A1ZA-06 11 24998210 24998210 G A LUZP2 Missense_Mutation p.R199K 0.73 tolerated(1) benign(0.011) TCGA-FS-A1ZA-06 11 26743107 26743107 G A SLC5A12 Missense_Mutation p.P52L 0.70 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 11 3050296 3050296 A G CARS Silent p.L321L 0.62 TCGA-FS-A1ZA-06 11 30932947 30932947 T C DCDC1 Missense_Mutation p.N1225S 0.60 tolerated(0.22) possibly_damaging(0.486) TCGA-FS-A1ZA-06 11 32460438 32460438 G A WT1 5'Flank 0.40 TCGA-FS-A1ZA-06 11 34097953 34097953 C T CAPRIN1 Silent p.S179S 0.63 TCGA-FS-A1ZA-06 11 34502410 34502410 G A ELF5 Missense_Mutation p.R204W 0.53 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 11 4471197 4471197 G A OR52K2 Missense_Mutation p.V210M 0.64 tolerated(0.05) possibly_damaging(0.81) TCGA-FS-A1ZA-06 11 45935479 45935479 G A PEX16 Silent p.L260L 0.77 TCGA-FS-A1ZA-06 11 47774550 47774550 G A FNBP4 Silent p.T185T 0.52 TCGA-FS-A1ZA-06 11 4825176 4825176 G A OR52R1 Silent p.I145I 0.59 TCGA-FS-A1ZA-06 11 4825646 4825646 C G OR52R1 5'Flank 0.24 TCGA-FS-A1ZA-06 11 4928737 4928737 C T OR51A7 Silent p.L46L 0.72 TCGA-FS-A1ZA-06 11 4936219 4936219 C T OR51G2 Silent p.L225L 0.57 TCGA-FS-A1ZA-06 11 5443451 5443451 C T OR51Q1 Silent p.T7T 0.71 TCGA-FS-A1ZA-06 11 5537672 5537672 G A UBQLNL 5'UTR 0.67 TCGA-FS-A1ZA-06 11 55735873 55735873 A C OR10AG1 Missense_Mutation p.L23V 0.56 deleterious(0.03) benign(0.187) TCGA-FS-A1ZA-06 11 55798450 55798450 G A OR5AS1 Missense_Mutation p.A186T 0.68 deleterious(0.04) possibly_damaging(0.811) TCGA-FS-A1ZA-06 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.58 TCGA-FS-A1ZA-06 11 56257929 56257929 C T OR5M8 Missense_Mutation p.M306I 0.56 tolerated(0.1) benign(0) TCGA-FS-A1ZA-06 11 56468777 56468777 C T OR9G1 Missense_Mutation p.P305L 0.21 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FS-A1ZA-06 11 58126414 58126414 C T OR5B17 Missense_Mutation p.M43I 0.59 tolerated_low_confidence(0.14) benign(0.026) TCGA-FS-A1ZA-06 11 58206722 58206722 C T OR5B12 Silent p.K301K 0.54 TCGA-FS-A1ZA-06 11 58605742 58605742 G A GLYATL2 Nonsense_Mutation p.Q60* 0.62 TCGA-FS-A1ZA-06 11 59812158 59812158 A C OOSP2 Missense_Mutation p.E86D 0.64 tolerated(1) benign(0.003) TCGA-FS-A1ZA-06 11 61541599 61541599 C T MYRF Missense_Mutation p.L426F 0.67 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 11 61563189 61563189 C T FEN1 Missense_Mutation p.A119V 0.66 tolerated(0.06) benign(0) TCGA-FS-A1ZA-06 11 6292458 6292458 T A CCKBR Missense_Mutation p.F343L 0.69 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZA-06 11 63174023 63174023 G A SLC22A9 Silent p.G376G 0.72 TCGA-FS-A1ZA-06 11 6459651 6459651 G A HPX Missense_Mutation p.P142L 0.61 deleterious(0.04) possibly_damaging(0.771) TCGA-FS-A1ZA-06 11 73676008 73676008 C T DNAJB13 Silent p.V140V 0.68 TCGA-FS-A1ZA-06 11 78369576 78369576 C T TENM4 Missense_Mutation p.G2613R 0.64 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 11 78413324 78413324 G A TENM4 Missense_Mutation p.P1445L 0.69 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZA-06 11 8008810 8008810 C T EIF3F 5'UTR 0.75 TCGA-FS-A1ZA-06 11 92534757 92534757 G A FAT3 Missense_Mutation p.E2860K 0.66 benign(0.108) TCGA-FS-A1ZA-06 11 93839204 93839204 G A HEPHL1 Missense_Mutation p.E985K 0.71 tolerated(0.88) benign(0.146) TCGA-FS-A1ZA-06 12 100784871 100784871 C T SLC17A8 Silent p.F149F 0.23 TCGA-FS-A1ZA-06 12 100897197 100897197 C T NR1H4 Missense_Mutation p.P11L 0.65 tolerated_low_confidence(0.8) benign(0.008) TCGA-FS-A1ZA-06 12 102053564 102053564 A T MYBPC1 Missense_Mutation p.N603Y 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 12 102811511 102811511 C T IGF1 3'UTR 0.35 TCGA-FS-A1ZA-06 12 104387195 104387195 G A GLT8D2 Silent p.N285N 0.36 TCGA-FS-A1ZA-06 12 104388206 104388206 G T GLT8D2 Missense_Mutation p.S225Y 0.38 deleterious(0) probably_damaging(0.941) TCGA-FS-A1ZA-06 12 107395084 107395084 G A CRY1 Missense_Mutation p.R220C 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 12 108013806 108013806 C T BTBD11 Silent p.I832I 0.17 TCGA-FS-A1ZA-06 12 10962048 10962048 G A TAS2R9 Silent p.T209T 0.17 TCGA-FS-A1ZA-06 12 110426860 110426860 C T GIT2 Missense_Mutation p.E105K 0.21 deleterious(0) possibly_damaging(0.79) TCGA-FS-A1ZA-06 12 112467425 112467425 C T NAA25 Silent p.G943G 0.17 TCGA-FS-A1ZA-06 12 112467426 112467426 C T NAA25 Missense_Mutation p.G943E 0.18 tolerated(0.77) benign(0.002) TCGA-FS-A1ZA-06 12 113532915 113532915 G A DTX1 Silent p.G485G 0.26 TCGA-FS-A1ZA-06 12 11461221 11461221 T C PRB4 Silent p.Q232Q 0.22 TCGA-FS-A1ZA-06 12 114793375 114793375 C T TBX5 Missense_Mutation p.G507R 0.16 deleterious(0.02) possibly_damaging(0.58) TCGA-FS-A1ZA-06 12 11545984 11545984 C T PRB2 Missense_Mutation p.G343E 0.45 tolerated(0.15) unknown(0) TCGA-FS-A1ZA-06 12 117178899 117178899 G A RNFT2 Missense_Mutation p.R28K 0.50 deleterious(0.03) probably_damaging(0.97) TCGA-FS-A1ZA-06 12 117703256 117703256 C T NOS1 Missense_Mutation p.M667I 0.42 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZA-06 12 120151086 120151086 C T CIT Missense_Mutation p.G1501R 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 12 122219098 122219098 C T RHOF Missense_Mutation p.G76E 0.68 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 12 122219099 122219099 C T RHOF Splice_Site p.X76_splice 0.68 TCGA-FS-A1ZA-06 12 126128651 126128651 G A TMEM132B Silent p.V484V 0.32 TCGA-FS-A1ZA-06 12 126138174 126138174 G A TMEM132B Missense_Mutation p.D719N 0.29 tolerated(0.12) possibly_damaging(0.903) TCGA-FS-A1ZA-06 12 126138367 126138367 G A TMEM132B Missense_Mutation p.G783E 0.18 deleterious(0) possibly_damaging(0.895) TCGA-FS-A1ZA-06 12 12630159 12630159 G A DUSP16 Missense_Mutation p.L536F 0.48 deleterious(0.05) probably_damaging(0.972) TCGA-FS-A1ZA-06 12 131605434 131605434 A - GPR133 Frame_Shift_Del p.A718Pfs*17 0.18 TCGA-FS-A1ZA-06 12 13220149 13220149 C T KIAA1467 Missense_Mutation p.S354L 0.40 tolerated(0.65) benign(0.001) TCGA-FS-A1ZA-06 12 132212883 132212883 C T SFSWAP Missense_Mutation p.R331C 0.20 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZA-06 12 132325329 132325329 T C MMP17 Missense_Mutation p.F212L 0.39 tolerated(0.07) benign(0.119) TCGA-FS-A1ZA-06 12 133381503 133381503 G A GOLGA3 Silent p.L466L 0.44 TCGA-FS-A1ZA-06 12 13529176 13529176 C T C12orf36 Missense_Mutation p.G55E 0.44 probably_damaging(0.969) TCGA-FS-A1ZA-06 12 13717165 13717165 G A GRIN2B Missense_Mutation p.L1003F 0.53 tolerated(0.08) possibly_damaging(0.767) TCGA-FS-A1ZA-06 12 13761755 13761755 G A GRIN2B Missense_Mutation p.P598S 0.40 tolerated(0.2) possibly_damaging(0.673) TCGA-FS-A1ZA-06 12 14693725 14693725 C T PLBD1 Silent p.K177K 0.33 TCGA-FS-A1ZA-06 12 14767822 14767822 T C GUCY2C Missense_Mutation p.N1009S 0.42 tolerated(0.08) benign(0.019) TCGA-FS-A1ZA-06 12 18891129 18891129 G A CAPZA3 5'UTR 0.45 TCGA-FS-A1ZA-06 12 18891565 18891565 T A CAPZA3 Silent p.L121L 0.35 TCGA-FS-A1ZA-06 12 21032414 21032414 G A SLCO1B3 Missense_Mutation p.G394R 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 12 21032512 21032512 C T SLCO1B3 Silent p.F426F 0.11 TCGA-FS-A1ZA-06 12 21636367 21636367 G C RECQL Missense_Mutation p.R215G 0.51 deleterious(0.02) benign(0.439) TCGA-FS-A1ZA-06 12 22354546 22354546 G A ST8SIA1 Silent p.I337I 0.45 TCGA-FS-A1ZA-06 12 25259884 25259884 G A LRMP Missense_Mutation p.D386N 0.38 tolerated(0.14) benign(0.098) TCGA-FS-A1ZA-06 12 31944956 31944956 G A H3F3C Nonsense_Mutation p.R49* 0.51 TCGA-FS-A1ZA-06 12 43777680 43777680 C A ADAMTS20 Missense_Mutation p.R1518L 0.46 deleterious(0) possibly_damaging(0.822) TCGA-FS-A1ZA-06 12 4736484 4736484 G A AKAP3 Silent p.I528I 0.27 TCGA-FS-A1ZA-06 12 4737030 4737030 C T AKAP3 Silent p.G346G 0.28 TCGA-FS-A1ZA-06 12 48371204 48371204 G A COL2A1 Missense_Mutation p.R1058C 0.30 unknown(0) TCGA-FS-A1ZA-06 12 48491808 48491808 G A SENP1 Missense_Mutation p.P35L 0.27 tolerated_low_confidence(0.27) benign(0.001) TCGA-FS-A1ZA-06 12 49416504 49416504 G A KMT2D Missense_Mutation p.R5403C 0.47 unknown(0) TCGA-FS-A1ZA-06 12 51773256 51773256 C T GALNT6 Missense_Mutation p.E104K 0.16 tolerated(0.14) benign(0.309) TCGA-FS-A1ZA-06 12 52760878 52760878 G A KRT85 Silent p.L104L 0.45 TCGA-FS-A1ZA-06 12 52790786 52790786 C T KRT82 Missense_Mutation p.E317K 0.27 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 12 52820623 52820623 C T KRT75 Silent p.E465E 0.56 TCGA-FS-A1ZA-06 12 52941945 52941945 G A KRT71 Silent p.Y323Y 0.37 TCGA-FS-A1ZA-06 12 52943849 52943849 C G KRT71 Missense_Mutation p.R207T 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-FS-A1ZA-06 12 52980741 52980741 G A KRT72 Missense_Mutation p.S445F 0.34 deleterious(0) benign(0.02) TCGA-FS-A1ZA-06 12 53068959 53068959 G A KRT1 3'UTR 0.45 TCGA-FS-A1ZA-06 12 53202184 53202184 G A KRT4 Missense_Mutation p.S340L 0.21 deleterious(0) possibly_damaging(0.854) TCGA-FS-A1ZA-06 12 53499366 53499366 G A SOAT2 Silent p.G99G 0.45 TCGA-FS-A1ZA-06 12 53722081 53722081 C T SP7 Missense_Mutation p.G382D 0.32 tolerated_low_confidence(0.08) benign(0.083) TCGA-FS-A1ZA-06 12 53722082 53722082 C T SP7 Missense_Mutation p.G382S 0.32 tolerated_low_confidence(0.33) benign(0.007) TCGA-FS-A1ZA-06 12 54366972 54366972 C T HOXC11 5'UTR 0.44 TCGA-FS-A1ZA-06 12 54635500 54635500 A G CBX5 3'UTR 0.48 TCGA-FS-A1ZA-06 12 55523903 55523903 C T OR9K2 Silent p.I117I 0.34 TCGA-FS-A1ZA-06 12 55615224 55615224 C T OR10A7 Missense_Mutation p.S139F 0.29 deleterious(0) benign(0.041) TCGA-FS-A1ZA-06 12 55688939 55688939 G A OR6C6 Silent p.F26F 0.20 TCGA-FS-A1ZA-06 12 55846720 55846720 C T OR6C2 Silent p.S241S 0.40 TCGA-FS-A1ZA-06 12 56365478 56365478 T C CDK2 3'UTR 0.36 TCGA-FS-A1ZA-06 12 57110896 57110896 G C NACA Intron 0.26 TCGA-FS-A1ZA-06 12 57493220 57493220 G A STAT6 Missense_Mutation p.S583F 0.46 deleterious(0) probably_damaging(0.941) TCGA-FS-A1ZA-06 12 57642489 57642489 G A STAC3 Silent p.I144I 0.47 TCGA-FS-A1ZA-06 12 58020668 58020668 C T B4GALNT1 Silent p.L487L 0.32 TCGA-FS-A1ZA-06 12 60098648 60098648 G T SLC16A7 Silent p.V22V 0.32 TCGA-FS-A1ZA-06 12 60098649 60098649 G A SLC16A7 Missense_Mutation p.V23I 0.33 deleterious(0.03) benign(0.153) TCGA-FS-A1ZA-06 12 60165093 60165093 C T SLC16A7 Missense_Mutation p.S104F 0.28 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZA-06 12 6125396 6125396 C T VWF Missense_Mutation p.D1772N 0.17 tolerated(0.4) benign(0.001) TCGA-FS-A1ZA-06 12 6138638 6138638 G A VWF Missense_Mutation p.P946L 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZA-06 12 662687 662687 C T B4GALNT3 Missense_Mutation p.P533L 0.39 tolerated(0.29) benign(0.003) TCGA-FS-A1ZA-06 12 6952642 6952642 C T GNB3 Missense_Mutation p.S128F 0.29 tolerated(0.16) benign(0.114) TCGA-FS-A1ZA-06 12 6965958 6965958 C T USP5 Silent p.F224F 0.26 TCGA-FS-A1ZA-06 12 71978369 71978369 A C LGR5 Missense_Mutation p.Q860P 0.48 deleterious(0.05) possibly_damaging(0.797) TCGA-FS-A1ZA-06 12 72962383 72962383 G A TRHDE Missense_Mutation p.G648E 0.24 tolerated(0.08) benign(0.01) TCGA-FS-A1ZA-06 12 7475910 7475910 G A ACSM4 Silent p.Q402Q 0.27 TCGA-FS-A1ZA-06 12 7637846 7637846 G A CD163 Silent p.I875I 0.23 TCGA-FS-A1ZA-06 12 76740717 76740717 G A BBS10 Missense_Mutation p.P350S 0.45 tolerated(0.05) possibly_damaging(0.511) TCGA-FS-A1ZA-06 12 7981326 7981326 C T SLC2A14 Missense_Mutation p.R240K 0.23 tolerated(0.87) benign(0.018) TCGA-FS-A1ZA-06 12 80733024 80733024 C T OTOGL Missense_Mutation p.S1668F 0.39 tolerated(0.2) benign(0.365) TCGA-FS-A1ZA-06 12 8075447 8075447 G A SLC2A3 Silent p.F414F 0.45 TCGA-FS-A1ZA-06 12 81102711 81102711 C T MYF6 Missense_Mutation p.P234L 0.54 tolerated(0.37) benign(0.008) TCGA-FS-A1ZA-06 12 8376125 8376125 G A FAM90A1 Missense_Mutation p.L118F 0.54 deleterious(0.02) probably_damaging(0.972) TCGA-FS-A1ZA-06 12 8612252 8612252 C T CLEC6A Missense_Mutation p.H61Y 0.20 tolerated(0.17) benign(0.004) TCGA-FS-A1ZA-06 12 8628733 8628733 C T CLEC6A Nonsense_Mutation p.Q128* 0.22 TCGA-FS-A1ZA-06 12 86373908 86373908 C A MGAT4C Missense_Mutation p.R199L 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 12 91502014 91502014 C T LUM Missense_Mutation p.G248E 0.25 tolerated(0.09) probably_damaging(0.922) TCGA-FS-A1ZA-06 12 93793091 93793091 C T NUDT4 Missense_Mutation p.P161L 0.10 tolerated_low_confidence(0.08) benign(0.035) TCGA-FS-A1ZA-06 12 97136343 97136343 C T C12orf55 Missense_Mutation p.H2400Y 0.50 tolerated(0.25) benign(0) TCGA-FS-A1ZA-06 13 102051387 102051387 G A NALCN Missense_Mutation p.L31F 0.22 deleterious(0.02) benign(0.001) TCGA-FS-A1ZA-06 13 102366844 102366844 G A ITGBL1 Missense_Mutation p.E446K 0.30 tolerated(0.44) possibly_damaging(0.67) TCGA-FS-A1ZA-06 13 110826973 110826973 G A COL4A1 Missense_Mutation p.P1108S 0.27 probably_damaging(0.977) TCGA-FS-A1ZA-06 13 113487183 113487183 G A ATP11A Missense_Mutation p.E469K 0.25 tolerated(0.05) benign(0.091) TCGA-FS-A1ZA-06 13 115090351 115090351 C T CHAMP1 Missense_Mutation p.P345L 0.19 deleterious(0.05) possibly_damaging(0.81) TCGA-FS-A1ZA-06 13 20216295 20216295 C T MPHOSPH8 Missense_Mutation p.S85L 0.30 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-FS-A1ZA-06 13 21373389 21373389 G A XPO4 Missense_Mutation p.P746L 0.27 tolerated(0.42) benign(0.004) TCGA-FS-A1ZA-06 13 25280515 25280515 G A ATP12A Missense_Mutation p.E701K 0.27 tolerated(0.18) benign(0.064) TCGA-FS-A1ZA-06 13 26620776 26620776 C T SHISA2 Missense_Mutation p.D255N 0.48 deleterious(0) possibly_damaging(0.454) TCGA-FS-A1ZA-06 13 28963935 28963935 C T FLT1 Missense_Mutation p.R656K 0.08 tolerated(0.21) probably_damaging(0.992) TCGA-FS-A1ZA-06 13 32776087 32776087 C T FRY Silent p.P1252P 0.16 TCGA-FS-A1ZA-06 13 36223862 36223862 T C NBEA Missense_Mutation p.F2593S 0.25 deleterious(0) benign(0.305) TCGA-FS-A1ZA-06 13 38211639 38211639 C T TRPC4 Missense_Mutation p.E784K 0.46 tolerated(0.14) benign(0.341) TCGA-FS-A1ZA-06 13 38266368 38266368 G A TRPC4 Silent p.F334F 0.18 TCGA-FS-A1ZA-06 13 39343797 39343797 C T FREM2 Silent p.G1831G 0.41 TCGA-FS-A1ZA-06 13 42729877 42729877 C T DGKH Silent p.F188F 0.55 TCGA-FS-A1ZA-06 13 46288366 46288366 G A SPERT Silent p.E402E 0.26 TCGA-FS-A1ZA-06 13 46357646 46357646 C T SIAH3 Missense_Mutation p.V228M 0.22 deleterious(0.01) possibly_damaging(0.633) TCGA-FS-A1ZA-06 13 46619653 46619653 T C ZC3H13 Splice_Site 0.27 TCGA-FS-A1ZA-06 13 50065877 50065877 A T SETDB2 Missense_Mutation p.K684N 0.40 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZA-06 13 52952722 52952722 C T THSD1 Silent p.K461K 0.42 TCGA-FS-A1ZA-06 13 53307392 53307392 C T LECT1 Missense_Mutation p.G106R 0.16 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 13 61103108 61103108 C T TDRD3 Silent p.F583F 0.35 TCGA-FS-A1ZA-06 13 70681625 70681625 C T KLHL1 Nonsense_Mutation p.W69* 0.20 TCGA-FS-A1ZA-06 13 72053391 72053391 C T DACH1 Missense_Mutation p.E596K 0.38 probably_damaging(0.999) TCGA-FS-A1ZA-06 13 79916915 79916915 C T RBM26 Missense_Mutation p.A744T 0.62 tolerated(0.09) probably_damaging(0.988) TCGA-FS-A1ZA-06 13 86368316 86368316 C T SLITRK6 Silent p.R776R 0.48 TCGA-FS-A1ZA-06 13 92101012 92101012 C T GPC5 Intron 0.49 TCGA-FS-A1ZA-06 13 95715076 95715076 G A ABCC4 Missense_Mutation p.S1083F 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 13 95858917 95858917 T C ABCC4 Missense_Mutation p.S344G 0.18 tolerated(0.07) benign(0.001) TCGA-FS-A1ZA-06 14 100126630 100126630 G A HHIPL1 Silent p.P463P 0.36 TCGA-FS-A1ZA-06 14 100820025 100820025 C T WARS Missense_Mutation p.G242R 0.46 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 14 102792712 102792712 C T ZNF839 Missense_Mutation p.P227S 0.38 tolerated(0.34) benign(0.008) TCGA-FS-A1ZA-06 14 105407826 105407826 T C AHNAK2 Silent p.G4654G 0.49 TCGA-FS-A1ZA-06 14 105408780 105408780 G A AHNAK2 Silent p.S4336S 0.19 TCGA-FS-A1ZA-06 14 106173485 106173485 G A IGHA1 3'UTR 0.16 TCGA-FS-A1ZA-06 14 106518850 106518850 C T IGHV3-7 Missense_Mutation p.E2K 0.55 tolerated_low_confidence(0.12) benign(0.019) TCGA-FS-A1ZA-06 14 106733275 106733275 C T IGHV1-24 Missense_Mutation p.D74N 0.19 tolerated(1) benign(0.001) TCGA-FS-A1ZA-06 14 107013057 107013057 C T IGHV3-49 Missense_Mutation p.E80K 0.45 tolerated_low_confidence(0.19) benign(0.205) TCGA-FS-A1ZA-06 14 20216051 20216051 C T OR4Q3 Silent p.I155I 0.29 TCGA-FS-A1ZA-06 14 20344485 20344485 C T OR4K2 Missense_Mutation p.S20F 0.12 deleterious(0.01) possibly_damaging(0.895) TCGA-FS-A1ZA-06 14 20502829 20502829 C T OR4K13 Missense_Mutation p.G30E 0.55 deleterious(0.04) benign(0.119) TCGA-FS-A1ZA-06 14 20612308 20612308 T C OR4N5 Silent p.P138P 0.18 TCGA-FS-A1ZA-06 14 21216002 21216002 G A EDDM3A Missense_Mutation p.R88Q 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1ZA-06 14 21465017 21465017 C T METTL17 Missense_Mutation p.S471F 0.56 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZA-06 14 21860739 21860739 C A CHD8 Missense_Mutation p.S2233I 0.27 tolerated(0.14) benign(0) TCGA-FS-A1ZA-06 14 22133644 22133644 C T OR4E2 Silent p.I116I 0.26 TCGA-FS-A1ZA-06 14 22362941 22362941 C T TRAV8-4 Silent p.T24T 0.45 TCGA-FS-A1ZA-06 14 22471482 22471482 C T TRAV18 Silent p.I11I 0.51 TCGA-FS-A1ZA-06 14 22471846 22471846 C T TRAV18 Missense_Mutation p.S90F 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-FS-A1ZA-06 14 22636337 22636337 C T TRAV30 Silent p.L5L 0.51 TCGA-FS-A1ZA-06 14 23865587 23865587 G A MYH6 Missense_Mutation p.R779W 0.36 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 14 23899786 23899786 C T MYH7 Missense_Mutation p.E328K 0.33 deleterious(0) probably_damaging(0.964) TCGA-FS-A1ZA-06 14 24724431 24724431 C T TGM1 Silent p.E558E 0.27 TCGA-FS-A1ZA-06 14 29237936 29237936 C T FOXG1 Missense_Mutation p.S484F 0.38 deleterious_low_confidence(0.03) benign(0.354) TCGA-FS-A1ZA-06 14 35005309 35005309 G A EAPP Silent p.L83L 0.42 TCGA-FS-A1ZA-06 14 51219250 51219250 G C NIN Missense_Mutation p.R1646G 0.48 tolerated(0.18) benign(0.054) TCGA-FS-A1ZA-06 14 51716235 51716235 C T TMX1 Missense_Mutation p.S180L 0.22 deleterious(0) probably_damaging(0.945) TCGA-FS-A1ZA-06 14 52899269 52899269 G A TXNDC16 Missense_Mutation p.P744L 0.48 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZA-06 14 62462960 62462960 G A SYT16 Missense_Mutation p.D75N 0.23 tolerated_low_confidence(0.13) benign(0.003) TCGA-FS-A1ZA-06 14 63453887 63453887 C T KCNH5 Missense_Mutation p.R151Q 0.31 tolerated(0.06) possibly_damaging(0.616) TCGA-FS-A1ZA-06 14 64476688 64476688 G A SYNE2 Missense_Mutation p.E1528K 0.36 benign(0.392) TCGA-FS-A1ZA-06 14 64574244 64574244 C T SYNE2 Silent p.S4176S 0.26 TCGA-FS-A1ZA-06 14 65253161 65253161 C T SPTB Silent p.Q1174Q 0.33 TCGA-FS-A1ZA-06 14 67746356 67746356 G A MPP5 Intron 0.50 TCGA-FS-A1ZA-06 14 68159693 68159695 TAT - RDH11 In_Frame_Del p.N50del 0.23 TCGA-FS-A1ZA-06 14 72197010 72197010 C A SIPA1L1 Nonsense_Mutation p.S1639* 0.57 TCGA-FS-A1ZA-06 14 72939580 72939580 G A RGS6 Silent p.K179K 0.19 TCGA-FS-A1ZA-06 14 74154009 74154009 T A DNAL1 Missense_Mutation p.F104L 0.24 tolerated(0.78) benign(0.001) TCGA-FS-A1ZA-06 14 74489674 74489674 C T CCDC176 Missense_Mutation p.L38F 0.20 tolerated(0.06) possibly_damaging(0.73) TCGA-FS-A1ZA-06 14 76948420 76948420 G C ESRRB Missense_Mutation p.E192D 0.61 tolerated(0.34) benign(0.016) TCGA-FS-A1ZA-06 14 79434617 79434617 T C NRXN3 Silent p.L651L 0.43 TCGA-FS-A1ZA-06 14 86087963 86087963 C T FLRT2 Silent p.A35A 0.21 TCGA-FS-A1ZA-06 14 88729767 88729767 C T KCNK10 Missense_Mutation p.E61K 0.26 deleterious_low_confidence(0.01) benign(0.346) TCGA-FS-A1ZA-06 14 88729835 88729835 G A KCNK10 Missense_Mutation p.P38L 0.51 tolerated_low_confidence(0.21) benign(0.015) TCGA-FS-A1ZA-06 14 88946640 88946640 C T PTPN21 Missense_Mutation p.D379N 0.47 deleterious(0) probably_damaging(0.928) TCGA-FS-A1ZA-06 14 90429758 90429758 G C TDP1 Missense_Mutation p.M100I 0.12 tolerated_low_confidence(0.22) benign(0.001) TCGA-FS-A1ZA-06 14 91155911 91155911 C T TTC7B Missense_Mutation p.R308Q 0.45 tolerated(0.06) benign(0.014) TCGA-FS-A1ZA-06 14 92159566 92159566 C T CATSPERB Silent p.V245V 0.46 TCGA-FS-A1ZA-06 14 94063737 94063737 G A UNC79 Missense_Mutation p.D898N 0.12 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 14 94395403 94395403 G A FAM181A Missense_Mutation p.D320N 0.53 tolerated(0.05) benign(0.178) TCGA-FS-A1ZA-06 14 94700066 94700066 G A PPP4R4 Missense_Mutation p.G198E 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 14 94780718 94780718 G T SERPINA6 Missense_Mutation p.L90I 0.42 deleterious(0.05) probably_damaging(0.94) TCGA-FS-A1ZA-06 14 96730652 96730652 C T BDKRB1 Silent p.F211F 0.48 TCGA-FS-A1ZA-06 15 101019668 101019668 C T CERS3 Missense_Mutation p.D161N 0.32 tolerated(0.09) probably_damaging(1) TCGA-FS-A1ZA-06 15 102186926 102186926 A G TM2D3 Splice_Site p.X168_splice 0.41 TCGA-FS-A1ZA-06 15 102252144 102252144 G C TARSL2 Missense_Mutation p.H251D 0.17 tolerated(0.23) benign(0.006) TCGA-FS-A1ZA-06 15 25481249 25481249 C T SNORD115-36 RNA 0.33 TCGA-FS-A1ZA-06 15 25967028 25967028 G A ATP10A Missense_Mutation p.S380F 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 15 26825473 26825473 G A GABRB3 Silent p.F225F 0.40 TCGA-FS-A1ZA-06 15 27193382 27193382 C T GABRA5 3'UTR 0.41 TCGA-FS-A1ZA-06 15 28491205 28491205 G A HERC2 Silent p.L1133L 0.33 TCGA-FS-A1ZA-06 15 32460296 32460296 G A CHRNA7 Silent p.G411G 0.21 TCGA-FS-A1ZA-06 15 41372018 41372018 G C INO80 Missense_Mutation p.R338G 0.36 deleterious(0) possibly_damaging(0.809) TCGA-FS-A1ZA-06 15 41767775 41767775 T A RTF1 Missense_Mutation p.F447I 0.40 tolerated(0.09) benign(0.396) TCGA-FS-A1ZA-06 15 42117477 42117477 C T MAPKBP1 Missense_Mutation p.S1463L 0.31 tolerated(0.54) benign(0.016) TCGA-FS-A1ZA-06 15 43244516 43244516 G A UBR1 Missense_Mutation p.H1656Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 15 45559947 45559947 G A SLC28A2 Silent p.V384V 0.28 TCGA-FS-A1ZA-06 15 45706921 45706921 G A SPATA5L1 Silent p.V529V 0.36 TCGA-FS-A1ZA-06 15 49833904 49833904 C T FAM227B Missense_Mutation p.G283R 0.37 deleterious(0.04) probably_damaging(0.995) TCGA-FS-A1ZA-06 15 51689759 51689759 C T GLDN Missense_Mutation p.P261S 0.23 tolerated(0.75) benign(0.006) TCGA-FS-A1ZA-06 15 52901656 52901656 A T FAM214A Silent p.V485V 0.32 TCGA-FS-A1ZA-06 15 54305795 54305795 C T UNC13C Missense_Mutation p.S232F 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 15 54860014 54860014 G A UNC13C Missense_Mutation p.G1992E 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZA-06 15 54914599 54914599 C T UNC13C Missense_Mutation p.H2061Y 0.41 tolerated_low_confidence(0.07) benign(0.005) TCGA-FS-A1ZA-06 15 55783387 55783387 T C DYX1C1 Silent p.E113E 0.43 TCGA-FS-A1ZA-06 15 57731779 57731779 C T CGNL1 Missense_Mutation p.P528S 0.35 tolerated(1) benign(0.002) TCGA-FS-A1ZA-06 15 64163218 64163218 C T MIR422A RNA 0.30 TCGA-FS-A1ZA-06 15 65239695 65239695 C T ANKDD1A Silent p.L411L 0.24 TCGA-FS-A1ZA-06 15 65239696 65239696 C T ANKDD1A Missense_Mutation p.R412C 0.21 tolerated(0.09) benign(0.084) TCGA-FS-A1ZA-06 15 65262507 65262507 G A SPG21 Missense_Mutation p.S169L 0.32 tolerated(0.3) benign(0.124) TCGA-FS-A1ZA-06 15 65295427 65295427 A C MTFMT Silent p.T381T 0.42 TCGA-FS-A1ZA-06 15 65490953 65490953 G A CILP Silent p.F557F 0.41 TCGA-FS-A1ZA-06 15 66797720 66797720 G A ZWILCH Missense_Mutation p.R15H 0.44 tolerated(0.55) benign(0.005) TCGA-FS-A1ZA-06 15 67501878 67501878 C T AAGAB Silent p.R180R 0.42 TCGA-FS-A1ZA-06 15 69335023 69335023 C T NOX5 Missense_Mutation p.R509W 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-FS-A1ZA-06 15 69672243 69672243 C T PAQR5 Silent p.L25L 0.34 TCGA-FS-A1ZA-06 15 74327548 74327548 C T PML Intron 0.28 TCGA-FS-A1ZA-06 15 74425599 74425599 C G ISLR2 Missense_Mutation p.D168E 0.42 tolerated(0.15) probably_damaging(0.997) TCGA-FS-A1ZA-06 15 75115900 75115900 G A LMAN1L Silent p.R400R 0.29 TCGA-FS-A1ZA-06 15 77471555 77471555 G A PEAK1 Missense_Mutation p.A905V 0.37 tolerated(0.1) probably_damaging(0.998) TCGA-FS-A1ZA-06 15 79310166 79310166 G A RASGRF1 Silent p.I563I 0.46 TCGA-FS-A1ZA-06 15 86270681 86270681 C T AKAP13 Silent p.A2362A 0.23 TCGA-FS-A1ZA-06 15 90347601 90347601 C T ANPEP Missense_Mutation p.M354I 0.51 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 15 91449693 91449693 C T MAN2A2 Silent p.L267L 0.39 TCGA-FS-A1ZA-06 15 93499875 93499875 G A CHD2 Missense_Mutation p.E666K 0.30 tolerated(0.06) benign(0.189) TCGA-FS-A1ZA-06 15 99671130 99671130 C T SYNM Silent p.I854I 0.64 TCGA-FS-A1ZA-06 16 10032069 10032069 C T GRIN2A Missense_Mutation p.D252N 0.33 deleterious(0) possibly_damaging(0.601) TCGA-FS-A1ZA-06 16 10997604 10997604 C T CIITA Silent p.A263A 0.37 TCGA-FS-A1ZA-06 16 1254329 1254329 G A CACNA1H Nonsense_Mutation p.W774* 0.42 TCGA-FS-A1ZA-06 16 1272209 1272209 C T TPSG1 Missense_Mutation p.G215E 0.38 tolerated(0.27) possibly_damaging(0.795) TCGA-FS-A1ZA-06 16 1537825 1537825 C T PTX4 Silent p.S91S 0.35 TCGA-FS-A1ZA-06 16 15932025 15932025 C T MYH11 Missense_Mutation p.D29N 0.40 probably_damaging(0.997) TCGA-FS-A1ZA-06 16 1642239 1642239 G A IFT140 Missense_Mutation p.S191F 0.40 tolerated(0.17) benign(0.001) TCGA-FS-A1ZA-06 16 1872925 1872925 G A HAGH Silent p.L64L 0.31 TCGA-FS-A1ZA-06 16 18809268 18809268 C T ARL6IP1 Missense_Mutation p.R90K 0.32 tolerated(0.46) benign(0.009) TCGA-FS-A1ZA-06 16 19083279 19083279 C T COQ7 Missense_Mutation p.R35C 0.42 tolerated(0.19) benign(0.001) TCGA-FS-A1ZA-06 16 19475337 19475337 C T TMC5 Silent p.F492F 0.42 TCGA-FS-A1ZA-06 16 19883979 19883979 G A GPRC5B Silent p.A63A 0.38 TCGA-FS-A1ZA-06 16 19884007 19884007 A T GPRC5B Missense_Mutation p.I54N 0.41 deleterious(0.01) possibly_damaging(0.828) TCGA-FS-A1ZA-06 16 20043054 20043054 G A GPR139 3'UTR 0.41 TCGA-FS-A1ZA-06 16 20497973 20497973 G A ACSM2A Silent p.K569K 0.44 TCGA-FS-A1ZA-06 16 20702395 20702395 C T ACSM1 Missense_Mutation p.R39K 0.34 tolerated(0.51) benign(0.006) TCGA-FS-A1ZA-06 16 20702472 20702472 G A ACSM1 Silent p.I13I 0.18 TCGA-FS-A1ZA-06 16 21261429 21261429 C T ANKS4B Missense_Mutation p.S181F 0.36 deleterious(0.03) possibly_damaging(0.8) TCGA-FS-A1ZA-06 16 21261430 21261430 C T ANKS4B Silent p.S181S 0.35 TCGA-FS-A1ZA-06 16 23205492 23205492 G A SCNN1G Silent p.R270R 0.31 TCGA-FS-A1ZA-06 16 23208688 23208688 C T SCNN1G Silent p.F339F 0.41 TCGA-FS-A1ZA-06 16 2342196 2342196 G A ABCA3 Silent p.L820L 0.41 TCGA-FS-A1ZA-06 16 24124306 24124306 G A PRKCB Silent p.L278L 0.42 TCGA-FS-A1ZA-06 16 24372868 24372868 C T CACNG3 Missense_Mutation p.S211F 0.47 deleterious(0) possibly_damaging(0.635) TCGA-FS-A1ZA-06 16 24580152 24580152 C T RBBP6 Missense_Mutation p.S714F 0.40 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZA-06 16 2569311 2569311 C T RP11-20I23.1 Missense_Mutation p.P353L 0.35 unknown(0) TCGA-FS-A1ZA-06 16 28602160 28602160 C T CCDC101 Silent p.D223D 0.21 TCGA-FS-A1ZA-06 16 29815380 29815380 G A KIF22 Silent p.K557K 0.33 TCGA-FS-A1ZA-06 16 29841948 29841948 C T MVP Silent p.S26S 0.43 TCGA-FS-A1ZA-06 16 30500600 30500600 G A ITGAL Missense_Mutation p.G369E 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 16 31341842 31341842 C T ITGAM Silent p.L1065L 0.57 TCGA-FS-A1ZA-06 16 46744674 46744674 C T MYLK3 Silent p.G714G 0.66 TCGA-FS-A1ZA-06 16 46766493 46766493 C T MYLK3 Silent p.E363E 0.81 TCGA-FS-A1ZA-06 16 4815911 4815911 C T ZNF500 Silent p.L23L 0.37 TCGA-FS-A1ZA-06 16 50325658 50325658 C T ADCY7 Silent p.F129F 0.26 TCGA-FS-A1ZA-06 16 5083627 5083627 A G NAGPA Silent p.S63S 0.29 TCGA-FS-A1ZA-06 16 51174880 51174880 G A SALL1 Missense_Mutation p.S418F 0.38 deleterious(0) possibly_damaging(0.498) TCGA-FS-A1ZA-06 16 61687532 61687532 C T CDH8 Missense_Mutation p.E794K 0.79 tolerated(0.06) benign(0.057) TCGA-FS-A1ZA-06 16 61687629 61687629 G A CDH8 Silent p.S761S 0.67 TCGA-FS-A1ZA-06 16 61687834 61687834 C G CDH8 Missense_Mutation p.G693A 0.74 tolerated(0.54) probably_damaging(0.999) TCGA-FS-A1ZA-06 16 65005942 65005942 G A CDH11 Silent p.V472V 0.28 TCGA-FS-A1ZA-06 16 66997711 66997711 G A CES3 Missense_Mutation p.V145I 0.39 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZA-06 16 67209013 67209013 T G NOL3 3'UTR 0.39 TCGA-FS-A1ZA-06 16 67209014 67209014 G C NOL3 3'UTR 0.40 TCGA-FS-A1ZA-06 16 67264382 67264382 G A FHOD1 Silent p.G962G 0.33 TCGA-FS-A1ZA-06 16 67304830 67304830 C T SLC9A5 Missense_Mutation p.S803F 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 16 67576226 67576226 G A FAM65A Missense_Mutation p.G533S 0.41 tolerated(0.3) benign(0.109) TCGA-FS-A1ZA-06 16 67969926 67969926 G T PSMB10 Missense_Mutation p.S108Y 0.46 tolerated(0.18) possibly_damaging(0.579) TCGA-FS-A1ZA-06 16 69727479 69727479 C T NFAT5 Nonsense_Mutation p.Q1251* 0.44 TCGA-FS-A1ZA-06 16 71103368 71103368 G A HYDIN Silent p.T592T 0.27 TCGA-FS-A1ZA-06 16 72142233 72142233 C T DHX38 Silent p.S1024S 0.47 TCGA-FS-A1ZA-06 16 74752922 74752922 G A FA2H Silent p.I250I 0.39 TCGA-FS-A1ZA-06 16 75670389 75670389 C T KARS Missense_Mutation p.G177R 0.36 deleterious(0.02) probably_damaging(0.974) TCGA-FS-A1ZA-06 16 772508 772508 G A FAM173A Missense_Mutation p.G220E 0.50 tolerated_low_confidence(0.38) unknown(0) TCGA-FS-A1ZA-06 16 77317797 77317797 C T ADAMTS18 3'UTR 0.43 TCGA-FS-A1ZA-06 16 77353924 77353924 G A ADAMTS18 Missense_Mutation p.S785F 0.26 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZA-06 16 84474488 84474488 A T ATP2C2 Missense_Mutation p.Q412L 0.24 tolerated(0.25) benign(0.024) TCGA-FS-A1ZA-06 16 89805688 89805688 G A FANCA Silent p.S1340S 0.40 TCGA-FS-A1ZA-06 16 9857917 9857917 C T GRIN2A Missense_Mutation p.D1162N 0.41 tolerated(0.22) benign(0.063) TCGA-FS-A1ZA-06 16 9892237 9892237 C T GRIN2A Silent p.G751G 0.35 TCGA-FS-A1ZA-06 17 10258071 10258071 C T MYH13 Missense_Mutation p.D311N 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZA-06 17 10303856 10303856 G A MYH8 Missense_Mutation p.R1196W 0.51 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 17 10348346 10348346 C T MYH4 Missense_Mutation p.E1805K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZA-06 17 10362607 10362607 G A MYH4 Silent p.F516F 0.32 TCGA-FS-A1ZA-06 17 10399431 10399431 C A MYH1 Nonsense_Mutation p.E1669* 0.34 TCGA-FS-A1ZA-06 17 10399641 10399641 C T MYH1 Missense_Mutation p.E1628K 0.45 deleterious(0.02) possibly_damaging(0.852) TCGA-FS-A1ZA-06 17 10412885 10412885 C T MYH1 Missense_Mutation p.E502K 0.28 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 17 10419317 10419317 C T MYH1 Missense_Mutation p.R144Q 0.46 deleterious(0.03) possibly_damaging(0.848) TCGA-FS-A1ZA-06 17 10424534 10424534 G A MYH2 3'UTR 0.46 TCGA-FS-A1ZA-06 17 10428305 10428305 C T MYH2 Silent p.R1580R 0.33 TCGA-FS-A1ZA-06 17 11593337 11593337 G A DNAH9 Missense_Mutation p.D1400N 0.55 benign(0.012) TCGA-FS-A1ZA-06 17 11597737 11597737 C T DNAH9 Silent p.I1615I 0.26 TCGA-FS-A1ZA-06 17 11833214 11833214 C T DNAH9 Missense_Mutation p.T3970I 0.31 benign(0.082) TCGA-FS-A1ZA-06 17 12661555 12661555 G A MYOCD Intron 0.33 TCGA-FS-A1ZA-06 17 12893453 12893453 G A ARHGAP44 Missense_Mutation p.D808N 0.39 deleterious_low_confidence(0.01) benign(0.054) TCGA-FS-A1ZA-06 17 14110234 14110235 TC - COX10 Frame_Shift_Del p.S346Gfs*118 0.19 TCGA-FS-A1ZA-06 17 15965136 15965136 G A NCOR1 Silent p.A1820A 0.36 TCGA-FS-A1ZA-06 17 18205274 18205274 G A TOP3A Silent p.I280I 0.29 TCGA-FS-A1ZA-06 17 19216440 19216440 C T EPN2 Missense_Mutation p.T332I 0.38 deleterious(0) probably_damaging(0.917) TCGA-FS-A1ZA-06 17 21215473 21215473 G A MAP2K3 Missense_Mutation p.R265Q 0.17 tolerated(0.27) benign(0.028) TCGA-FS-A1ZA-06 17 26603971 26603971 G A AC061975.8 5'Flank 0.38 TCGA-FS-A1ZA-06 17 26821451 26821451 G A SLC13A2 Nonsense_Mutation p.W459* 0.38 TCGA-FS-A1ZA-06 17 26822720 26822720 G A SLC13A2 Silent p.Q501Q 0.38 TCGA-FS-A1ZA-06 17 26861883 26861883 C T FOXN1 Missense_Mutation p.P432S 0.31 tolerated(0.12) possibly_damaging(0.883) TCGA-FS-A1ZA-06 17 28511669 28511669 C T NSRP1 Silent p.S218S 0.44 TCGA-FS-A1ZA-06 17 29280326 29280326 G A ADAP2 Silent p.R254R 0.27 TCGA-FS-A1ZA-06 17 29554564 29554567 ATGG TAA NF1 Frame_Shift_Del p.K783Nfs*8 0.09 TCGA-FS-A1ZA-06 17 2995575 2995575 G A OR1D2 Missense_Mutation p.S239F 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 17 33768102 33768102 C T SLFN13 Missense_Mutation p.E736K 0.40 tolerated(0.57) benign(0.012) TCGA-FS-A1ZA-06 17 34499273 34499273 G A TBC1D3B Silent p.D146D 0.11 TCGA-FS-A1ZA-06 17 34893583 34893583 C T PIGW Silent p.F211F 0.26 TCGA-FS-A1ZA-06 17 36486381 36486381 G A GPR179 Missense_Mutation p.P1024L 0.32 tolerated(0.05) benign(0.037) TCGA-FS-A1ZA-06 17 36894823 36894823 G A PCGF2 Silent p.L151L 0.29 TCGA-FS-A1ZA-06 17 37340360 37340360 G A CACNB1 Silent p.S274S 0.43 TCGA-FS-A1ZA-06 17 38183151 38183151 G A MED24 Missense_Mutation p.S556F 0.35 tolerated(0.07) benign(0.266) TCGA-FS-A1ZA-06 17 39140096 39140096 C T KRT40 Missense_Mutation p.E144K 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A1ZA-06 17 39671910 39671910 T G KRT15 Missense_Mutation p.E354A 0.46 deleterious(0) probably_damaging(0.96) TCGA-FS-A1ZA-06 17 40011029 40011029 T A KLHL11 Missense_Mutation p.I364F 0.39 deleterious(0.03) benign(0.264) TCGA-FS-A1ZA-06 17 41142437 41142437 T A RUNDC1 Silent p.P320P 0.37 TCGA-FS-A1ZA-06 17 42155881 42155881 C T HDAC5 Missense_Mutation p.E1107K 0.39 tolerated(0.3) benign(0.075) TCGA-FS-A1ZA-06 17 42226366 42226366 C T C17orf53 Missense_Mutation p.P399S 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 17 42988759 42988759 A C GFAP Nonsense_Mutation p.Y324* 0.39 TCGA-FS-A1ZA-06 17 43922296 43922296 C T SPPL2C Silent p.L8L 0.38 TCGA-FS-A1ZA-06 17 45918102 45918102 G A SCRN2 Silent p.P36P 0.53 TCGA-FS-A1ZA-06 17 4714187 4714187 C T PLD2 Silent p.F317F 0.36 TCGA-FS-A1ZA-06 17 47394451 47394451 G A ZNF652 Missense_Mutation p.R213C 0.49 deleterious(0.03) benign(0.001) TCGA-FS-A1ZA-06 17 47656142 47656142 G A NXPH3 Missense_Mutation p.G80E 0.41 tolerated(0.2) benign(0.032) TCGA-FS-A1ZA-06 17 4837492 4837492 G A GP1BA Silent p.L531L 0.38 TCGA-FS-A1ZA-06 17 5050444 5050444 C T USP6 Missense_Mutation p.P796S 0.35 deleterious_low_confidence(0.01) benign(0.145) TCGA-FS-A1ZA-06 17 5114157 5114157 T G SCIMP Missense_Mutation p.E126A 0.46 deleterious(0) possibly_damaging(0.655) TCGA-FS-A1ZA-06 17 55182852 55182852 C T AKAP1 Silent p.F9F 0.31 TCGA-FS-A1ZA-06 17 56270888 56270888 C T EPX Silent p.S109S 0.34 TCGA-FS-A1ZA-06 17 56345158 56345158 G A LPO Missense_Mutation p.E648K 0.47 deleterious(0.03) possibly_damaging(0.455) TCGA-FS-A1ZA-06 17 56404969 56404969 C T BZRAP1 Missense_Mutation p.E105K 0.31 deleterious_low_confidence(0.01) benign(0.097) TCGA-FS-A1ZA-06 17 58009056 58009056 C T RPS6KB1 Missense_Mutation p.P221S 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZA-06 17 61498857 61498857 C T TANC2 Silent p.T1838T 0.41 TCGA-FS-A1ZA-06 17 61601531 61601531 G A KCNH6 Missense_Mutation p.M36I 0.42 tolerated(0.43) benign(0.048) TCGA-FS-A1ZA-06 17 62137897 62137897 G A ERN1 Missense_Mutation p.P380S 0.34 deleterious(0.04) probably_damaging(0.943) TCGA-FS-A1ZA-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.34 deleterious(0) possibly_damaging(0.817) TCGA-FS-A1ZA-06 17 62594524 62594524 G A SMURF2 Missense_Mutation p.P59L 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 17 64208268 64208268 C T APOH Missense_Mutation p.D341N 0.25 tolerated(0.07) possibly_damaging(0.567) TCGA-FS-A1ZA-06 17 66033503 66033503 T C KPNA2 Silent p.N35N 0.53 TCGA-FS-A1ZA-06 17 67247926 67247926 G A ABCA5 Silent p.V1499V 0.51 TCGA-FS-A1ZA-06 17 6928507 6928507 C T BCL6B Missense_Mutation p.R293C 0.38 tolerated(0.06) benign(0) TCGA-FS-A1ZA-06 17 71394260 71394260 G A SDK2 Nonsense_Mutation p.Q1090* 0.35 TCGA-FS-A1ZA-06 17 71433941 71433941 C T SDK2 Missense_Mutation p.E313K 0.46 deleterious(0.03) possibly_damaging(0.9) TCGA-FS-A1ZA-06 17 71433942 71433942 C T SDK2 Silent p.K312K 0.44 TCGA-FS-A1ZA-06 17 73488762 73488762 C T KIAA0195 Silent p.L602L 0.32 TCGA-FS-A1ZA-06 17 74326656 74326656 G A PRPSAP1 Silent p.F185F 0.30 TCGA-FS-A1ZA-06 17 7674161 7674161 G A DNAH2 Silent p.K1424K 0.31 TCGA-FS-A1ZA-06 17 7674777 7674777 C T DNAH2 Missense_Mutation p.H1498Y 0.42 probably_damaging(0.962) TCGA-FS-A1ZA-06 17 7719992 7719992 G A DNAH2 Missense_Mutation p.R3278Q 0.43 probably_damaging(1) TCGA-FS-A1ZA-06 17 78264460 78264460 A T RNF213 Missense_Mutation p.I402F 0.30 benign(0.383) TCGA-FS-A1ZA-06 17 78264462 78264462 C T RNF213 Silent p.I402I 0.32 TCGA-FS-A1ZA-06 17 78350260 78350260 C T RNF213 Missense_Mutation p.H4449Y 0.30 probably_damaging(0.998) TCGA-FS-A1ZA-06 17 78933889 78933889 G A RPTOR Silent p.T1163T 0.32 TCGA-FS-A1ZA-06 17 78933890 78933890 G A RPTOR Missense_Mutation p.G1164S 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-FS-A1ZA-06 17 79650870 79650870 C T ARL16 5'UTR 0.30 TCGA-FS-A1ZA-06 17 79954519 79954519 C T ASPSCR1 Missense_Mutation p.P244S 0.62 deleterious(0) unknown(0) TCGA-FS-A1ZA-06 17 80788605 80788605 C T ZNF750 Missense_Mutation p.E529K 0.33 tolerated(0.74) benign(0.001) TCGA-FS-A1ZA-06 17 8172023 8172023 C T PFAS Silent p.S1185S 0.35 TCGA-FS-A1ZA-06 17 8215685 8215685 C T ARHGEF15 Missense_Mutation p.P110S 0.41 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FS-A1ZA-06 17 8249174 8249174 T A ODF4 3'UTR 0.36 TCGA-FS-A1ZA-06 17 9792876 9792876 G A GLP2R Missense_Mutation p.A506T 0.38 tolerated(0.63) benign(0.007) TCGA-FS-A1ZA-06 18 10471870 10471870 T A APCDD1 Missense_Mutation p.C196S 0.73 tolerated(0.4) benign(0.007) TCGA-FS-A1ZA-06 18 10672856 10672856 C T PIEZO2 Missense_Mutation p.D2613N 0.60 tolerated(1) benign(0.001) TCGA-FS-A1ZA-06 18 19424197 19424197 G A MIB1 Missense_Mutation p.E732K 0.24 tolerated(0.62) benign(0.023) TCGA-FS-A1ZA-06 18 19995915 19995915 C T CTAGE1 Missense_Mutation p.M620I 0.56 tolerated(0.39) benign(0.008) TCGA-FS-A1ZA-06 18 21044211 21044211 G A RIOK3 Missense_Mutation p.E123K 0.24 tolerated(0.19) benign(0.104) TCGA-FS-A1ZA-06 18 28728536 28728536 C T DSC1 Missense_Mutation p.E233K 0.24 deleterious(0.01) possibly_damaging(0.741) TCGA-FS-A1ZA-06 18 28914104 28914104 G A DSG1 Missense_Mutation p.G315E 0.13 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 18 29867420 29867420 G A GAREM Silent p.T380T 0.12 TCGA-FS-A1ZA-06 18 30926233 30926233 C T CCDC178 Missense_Mutation p.M200I 0.19 deleterious(0.03) benign(0.023) TCGA-FS-A1ZA-06 18 32409101 32409101 C T DTNA Intron 0.72 TCGA-FS-A1ZA-06 18 33272216 33272216 T C GALNT1 Missense_Mutation p.F411L 0.20 deleterious(0.01) benign(0.17) TCGA-FS-A1ZA-06 18 34298434 34298434 C T FHOD3 Missense_Mutation p.P883L 0.57 deleterious(0.04) benign(0.008) TCGA-FS-A1ZA-06 18 40850236 40850236 C T SYT4 3'UTR 0.66 TCGA-FS-A1ZA-06 18 45566849 45566849 G A ZBTB7C Silent p.S210S 0.56 TCGA-FS-A1ZA-06 18 50731608 50731608 A T DCC Missense_Mutation p.E532D 0.10 tolerated(0.24) possibly_damaging(0.781) TCGA-FS-A1ZA-06 18 50918084 50918084 G A DCC Missense_Mutation p.D839N 0.13 deleterious(0) benign(0.083) TCGA-FS-A1ZA-06 18 56247653 56247653 C A ALPK2 Missense_Mutation p.D119Y 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-FS-A1ZA-06 18 59483240 59483240 C T RNF152 Missense_Mutation p.E153K 0.11 tolerated(0.36) benign(0.027) TCGA-FS-A1ZA-06 18 59483414 59483414 G A RNF152 Missense_Mutation p.P95S 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-FS-A1ZA-06 18 59947636 59947636 T C KIAA1468 Missense_Mutation p.V1004A 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZA-06 18 61310695 61310695 C T SERPINB4 Silent p.G39G 0.62 TCGA-FS-A1ZA-06 18 61471606 61471606 C T SERPINB7 Silent p.L294L 0.39 TCGA-FS-A1ZA-06 18 66678260 66678260 G A CCDC102B Silent p.V451V 0.24 TCGA-FS-A1ZA-06 18 7231687 7231687 C T LRRC30 Missense_Mutation p.S184F 0.72 deleterious(0.01) possibly_damaging(0.613) TCGA-FS-A1ZA-06 18 7231688 7231688 C T LRRC30 Silent p.S184S 0.74 TCGA-FS-A1ZA-06 18 8825200 8825200 C T SOGA2 Missense_Mutation p.P1231L 0.83 tolerated(0.16) benign(0.003) TCGA-FS-A1ZA-06 19 10085029 10085029 C T COL5A3 Missense_Mutation p.G1133E 0.35 probably_damaging(1) TCGA-FS-A1ZA-06 19 1032430 1032430 C T CNN2 Silent p.I75I 0.31 TCGA-FS-A1ZA-06 19 10670361 10670361 G A KRI1 Silent p.I323I 0.41 TCGA-FS-A1ZA-06 19 10747040 10747040 C T SLC44A2 Silent p.A425A 0.26 TCGA-FS-A1ZA-06 19 11123704 11123704 A G SMARCA4 Missense_Mutation p.K785R 0.29 probably_damaging(0.98) TCGA-FS-A1ZA-06 19 11134266 11134266 C T SMARCA4 Nonsense_Mutation p.R978* 0.62 TCGA-FS-A1ZA-06 19 11470278 11470278 C T DKFZP761J1410 Intron 0.35 TCGA-FS-A1ZA-06 19 12188074 12188074 C T ZNF844 3'UTR 0.31 TCGA-FS-A1ZA-06 19 1298561 1298561 C T EFNA2 Missense_Mutation p.P156S 0.30 tolerated(0.07) benign(0.005) TCGA-FS-A1ZA-06 19 13063555 13063555 G A RAD23A Missense_Mutation p.G289E 0.29 tolerated(0.86) benign(0.05) TCGA-FS-A1ZA-06 19 13063556 13063556 G A RAD23A Silent p.G289G 0.33 TCGA-FS-A1ZA-06 19 14043522 14043522 C T PODNL1 Nonsense_Mutation p.W512* 0.14 TCGA-FS-A1ZA-06 19 1460252 1460252 A G APC2 Missense_Mutation p.N459S 0.33 benign(0.223) TCGA-FS-A1ZA-06 19 14883198 14883198 G A EMR2 Missense_Mutation p.S104F 0.31 deleterious(0.02) probably_damaging(0.993) TCGA-FS-A1ZA-06 19 14952173 14952173 C T OR7A10 Missense_Mutation p.E173K 0.22 tolerated_low_confidence(0.07) benign(0.046) TCGA-FS-A1ZA-06 19 15065139 15065139 G A SLC1A6 Missense_Mutation p.S391L 0.46 deleterious(0.01) probably_damaging(0.988) TCGA-FS-A1ZA-06 19 15918703 15918703 C G OR10H1 Missense_Mutation p.V49L 0.26 deleterious(0.01) benign(0.234) TCGA-FS-A1ZA-06 19 16025151 16025151 G A CYP4F11 Missense_Mutation p.S454L 0.36 deleterious(0) probably_damaging(0.965) TCGA-FS-A1ZA-06 19 16314426 16314426 C T AP1M1 Silent p.L67L 0.47 TCGA-FS-A1ZA-06 19 16591475 16591475 C T CALR3 Missense_Mutation p.D321N 0.38 deleterious(0.04) benign(0.046) TCGA-FS-A1ZA-06 19 17534589 17534589 C T MVB12A Silent p.S207S 0.34 TCGA-FS-A1ZA-06 19 19655723 19655723 G A CILP2 Missense_Mutation p.G790D 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 19766714 19766714 G A ATP13A1 Silent p.V414V 0.44 TCGA-FS-A1ZA-06 19 19790846 19790846 C T ZNF101 Missense_Mutation p.P350S 0.42 tolerated(1) benign(0.003) TCGA-FS-A1ZA-06 19 19906328 19906328 C T ZNF506 Missense_Mutation p.C123Y 0.35 tolerated(0.1) benign(0.312) TCGA-FS-A1ZA-06 19 20228855 20228855 G A ZNF90 Silent p.K164K 0.55 TCGA-FS-A1ZA-06 19 2098799 2098799 A G IZUMO4 Missense_Mutation p.M184V 0.41 tolerated_low_confidence(0.5) benign(0.016) TCGA-FS-A1ZA-06 19 21240397 21240397 C T ZNF430 Missense_Mutation p.P428L 0.38 deleterious(0.03) benign(0.394) TCGA-FS-A1ZA-06 19 22939414 22939414 T A ZNF99 3'Flank 0.32 TCGA-FS-A1ZA-06 19 2987089 2987089 C T TLE6 Missense_Mutation p.L132F 0.34 tolerated(0.29) probably_damaging(0.986) TCGA-FS-A1ZA-06 19 3179830 3179830 G A S1PR4 Missense_Mutation p.G347E 0.44 tolerated(0.21) benign(0.002) TCGA-FS-A1ZA-06 19 33406353 33406353 C T CEP89 Silent p.E485E 0.31 TCGA-FS-A1ZA-06 19 35251315 35251315 G A ZNF599 Nonsense_Mutation p.Q131* 0.41 TCGA-FS-A1ZA-06 19 3589544 3589544 G T GIPC3 Silent p.V232V 0.33 TCGA-FS-A1ZA-06 19 3589545 3589545 G T GIPC3 Nonsense_Mutation p.E233* 0.35 TCGA-FS-A1ZA-06 19 36017803 36017803 C T SBSN Missense_Mutation p.G461R 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-FS-A1ZA-06 19 3653369 3653369 G A PIP5K1C Silent p.F280F 0.55 TCGA-FS-A1ZA-06 19 37368501 37368501 C T ZNF345 Missense_Mutation p.P257S 0.28 deleterious(0) possibly_damaging(0.726) TCGA-FS-A1ZA-06 19 37368502 37368502 C T ZNF345 Missense_Mutation p.P257L 0.32 deleterious(0.02) possibly_damaging(0.577) TCGA-FS-A1ZA-06 19 3762662 3762662 C T MRPL54 5'UTR 0.38 TCGA-FS-A1ZA-06 19 37643591 37643591 G A ZNF585A Missense_Mutation p.H349Y 0.44 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZA-06 19 37905286 37905286 G A ZNF569 Nonsense_Mutation p.Q92* 0.40 TCGA-FS-A1ZA-06 19 38077499 38077499 G A ZNF571 Intron 0.31 TCGA-FS-A1ZA-06 19 38230610 38230610 G A ZNF573 Missense_Mutation p.L261F 0.40 tolerated(0.07) probably_damaging(0.998) TCGA-FS-A1ZA-06 19 38860892 38860892 C T CATSPERG Silent p.I1069I 0.59 TCGA-FS-A1ZA-06 19 38987054 38987054 C T RYR1 Silent p.I2223I 0.26 TCGA-FS-A1ZA-06 19 38996005 38996005 C T RYR1 Silent p.P2789P 0.35 TCGA-FS-A1ZA-06 19 39078098 39078098 C T RYR1 3'Flank 0.50 TCGA-FS-A1ZA-06 19 39090785 39090785 G A MAP4K1 Silent p.L514L 0.19 TCGA-FS-A1ZA-06 19 39976354 39976354 C T TIMM50 Silent p.C236C 0.42 TCGA-FS-A1ZA-06 19 40363205 40363205 C T FCGBP Silent p.Q4955Q 0.38 TCGA-FS-A1ZA-06 19 40512005 40512005 C T ZNF546 Silent p.P29P 0.46 TCGA-FS-A1ZA-06 19 41063266 41063266 C T SPTBN4 Missense_Mutation p.T1876I 0.35 tolerated(0.15) benign(0.09) TCGA-FS-A1ZA-06 19 41307069 41307069 C T EGLN2 Silent p.L198L 0.35 TCGA-FS-A1ZA-06 19 4171149 4171149 G A CREB3L3 Missense_Mutation p.A318T 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-FS-A1ZA-06 19 41928208 41928208 C T BCKDHA Silent p.F262F 0.21 TCGA-FS-A1ZA-06 19 42492102 42492102 G A ATP1A3 Missense_Mutation p.P128S 0.34 tolerated(0.24) benign(0.091) TCGA-FS-A1ZA-06 19 42492526 42492526 C T ATP1A3 Missense_Mutation p.E46K 0.36 deleterious(0.02) benign(0.37) TCGA-FS-A1ZA-06 19 425190 425190 G A SHC2 Missense_Mutation p.P406S 0.51 tolerated(0.37) benign(0.041) TCGA-FS-A1ZA-06 19 42599549 42599549 C T POU2F2 Silent p.V340V 0.26 TCGA-FS-A1ZA-06 19 42603737 42603737 G A POU2F2 Missense_Mutation p.P148L 0.50 deleterious(0.02) benign(0.342) TCGA-FS-A1ZA-06 19 43237007 43237007 C T PSG3 Missense_Mutation p.G213E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 43358450 43358450 G A PSG10P RNA 0.30 TCGA-FS-A1ZA-06 19 43373045 43373045 G A PSG1 Missense_Mutation p.P284L 0.25 tolerated(0.07) benign(0.196) TCGA-FS-A1ZA-06 19 43570732 43570732 G A PSG2 Missense_Mutation p.L329F 0.29 tolerated(0.17) benign(0) TCGA-FS-A1ZA-06 19 43680253 43680253 C T PSG5 Missense_Mutation p.E160K 0.39 deleterious(0.02) possibly_damaging(0.816) TCGA-FS-A1ZA-06 19 43922105 43922105 C T TEX101 Missense_Mutation p.P174L 0.38 deleterious(0.02) benign(0.052) TCGA-FS-A1ZA-06 19 44351245 44351245 C T ZNF283 Silent p.F164F 0.29 TCGA-FS-A1ZA-06 19 44635521 44635521 A G ZNF225 Missense_Mutation p.K252E 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-FS-A1ZA-06 19 44648781 44648781 G A ZNF234 5'UTR 0.38 TCGA-FS-A1ZA-06 19 44660636 44660636 C T ZNF234 Missense_Mutation p.S156F 0.42 tolerated(0.08) benign(0.035) TCGA-FS-A1ZA-06 19 46498687 46498687 G A CCDC61 5'Flank 0.40 TCGA-FS-A1ZA-06 19 46664004 46664004 C T IGFL2 Silent p.P80P 0.38 TCGA-FS-A1ZA-06 19 47124798 47124798 G A PTGIR Silent p.F300F 0.39 TCGA-FS-A1ZA-06 19 47996742 47996742 G A NAPA Silent p.F117F 0.37 TCGA-FS-A1ZA-06 19 48863344 48863344 G A TMEM143 Silent p.I118I 0.35 TCGA-FS-A1ZA-06 19 49166770 49166770 G A NTN5 Missense_Mutation p.S352L 0.25 deleterious(0.02) possibly_damaging(0.787) TCGA-FS-A1ZA-06 19 49259613 49259613 C T FGF21 Silent p.F40F 0.30 TCGA-FS-A1ZA-06 19 49376675 49376675 G A PPP1R15A Missense_Mutation p.G62E 0.34 tolerated(0.49) probably_damaging(0.994) TCGA-FS-A1ZA-06 19 50944251 50944251 C T MYBPC2 Silent p.I229I 0.38 TCGA-FS-A1ZA-06 19 51518031 51518031 G A KLK10 3'UTR 0.41 TCGA-FS-A1ZA-06 19 51630441 51630441 C T SIGLEC9 Silent p.N301N 0.40 TCGA-FS-A1ZA-06 19 51630442 51630442 C T SIGLEC9 Missense_Mutation p.P302S 0.41 tolerated(0.16) possibly_damaging(0.779) TCGA-FS-A1ZA-06 19 51850297 51850297 G A ETFB Nonsense_Mutation p.Q243* 0.44 TCGA-FS-A1ZA-06 19 52002937 52002937 C T SIGLEC12 Missense_Mutation p.G281E 0.37 tolerated(0.29) possibly_damaging(0.893) TCGA-FS-A1ZA-06 19 52115671 52115671 G A SIGLEC5 Missense_Mutation p.S490F 0.39 tolerated(0.57) benign(0.09) TCGA-FS-A1ZA-06 19 52519103 52519103 G A ZNF614 Missense_Mutation p.P583L 0.39 tolerated_low_confidence(0.4) benign(0.007) TCGA-FS-A1ZA-06 19 52772836 52772836 C T ZNF766 5'UTR 0.34 TCGA-FS-A1ZA-06 19 52869116 52869116 C T ZNF610 Missense_Mutation p.S162L 0.27 tolerated(0.11) benign(0.005) TCGA-FS-A1ZA-06 19 52919895 52919895 G A ZNF528 Missense_Mutation p.R597K 0.31 tolerated(0.19) benign(0.002) TCGA-FS-A1ZA-06 19 53014718 53014718 C T ZNF578 Missense_Mutation p.R362C 0.32 deleterious(0.02) possibly_damaging(0.627) TCGA-FS-A1ZA-06 19 53383908 53383908 G A ZNF320 Missense_Mutation p.P491S 0.31 deleterious(0) benign(0.119) TCGA-FS-A1ZA-06 19 53432000 53432000 G T ZNF321P 3'UTR 0.61 TCGA-FS-A1ZA-06 19 54313799 54313799 C T NLRP12 Missense_Mutation p.E372K 0.34 deleterious(0.04) probably_damaging(0.91) TCGA-FS-A1ZA-06 19 54403501 54403501 C T PRKCG Silent p.F432F 0.38 TCGA-FS-A1ZA-06 19 54544120 54544120 G A VSTM1 3'UTR 0.44 TCGA-FS-A1ZA-06 19 54684597 54684597 C T MBOAT7 Nonsense_Mutation p.W249* 0.56 TCGA-FS-A1ZA-06 19 54754776 54754776 G A LILRB5 Silent p.P550P 0.51 TCGA-FS-A1ZA-06 19 54867598 54867598 C T LAIR1 Missense_Mutation p.G228R 0.25 tolerated(1) probably_damaging(0.996) TCGA-FS-A1ZA-06 19 55179348 55179348 G A LILRB4 Missense_Mutation p.D409N 0.38 deleterious(0.01) possibly_damaging(0.813) TCGA-FS-A1ZA-06 19 55247300 55247300 G A KIR3DL3 Missense_Mutation p.M356I 0.74 tolerated(0.09) benign(0.009) TCGA-FS-A1ZA-06 19 55290088 55290088 C T KIR2DL1 Missense_Mutation p.S230L 0.75 tolerated(0.08) benign(0.391) TCGA-FS-A1ZA-06 19 55325356 55325356 C T KIR2DL4 Silent p.F273F 0.35 TCGA-FS-A1ZA-06 19 56459217 56459217 C T NLRP8 5'UTR 0.45 TCGA-FS-A1ZA-06 19 57327204 57327204 T A PEG3 Missense_Mutation p.N869I 0.44 tolerated(0.34) benign(0.015) TCGA-FS-A1ZA-06 19 57640915 57640915 G A USP29 Missense_Mutation p.G291E 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 58046596 58046596 C T ZNF549 Missense_Mutation p.H53Y 0.37 tolerated(1) benign(0.246) TCGA-FS-A1ZA-06 19 58101380 58101380 T C ZIK1 Silent p.G67G 0.38 TCGA-FS-A1ZA-06 19 58187518 58187518 C T ZSCAN4 Missense_Mutation p.A2V 0.13 deleterious(0.02) possibly_damaging(0.796) TCGA-FS-A1ZA-06 19 58437712 58437712 G A ZNF418 Missense_Mutation p.H613Y 0.72 deleterious(0) possibly_damaging(0.684) TCGA-FS-A1ZA-06 19 58991763 58991763 C T ZNF446 Silent p.F341F 0.44 TCGA-FS-A1ZA-06 19 6306862 6306862 C T ACER1 Missense_Mutation p.G220S 0.30 tolerated(0.42) benign(0.065) TCGA-FS-A1ZA-06 19 6496064 6496064 G A TUBB4A Missense_Mutation p.T149M 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 19 6735965 6735965 C T GPR108 Missense_Mutation p.G82E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 7694420 7694420 G A XAB2 5'UTR 0.36 TCGA-FS-A1ZA-06 19 7808068 7808068 C T CD209 Missense_Mutation p.E358K 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 19 8196555 8196555 C T FBN3 Missense_Mutation p.E625K 0.54 tolerated(1) benign(0.002) TCGA-FS-A1ZA-06 19 8645854 8645854 G A ADAMTS10 Missense_Mutation p.P1079S 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 9048722 9048722 C T MUC16 Missense_Mutation p.G10970E 0.28 benign(0.016) TCGA-FS-A1ZA-06 19 9049710 9049710 G A MUC16 Missense_Mutation p.P10641S 0.32 benign(0.003) TCGA-FS-A1ZA-06 19 9049823 9049823 G A MUC16 Missense_Mutation p.P10603L 0.35 benign(0.003) TCGA-FS-A1ZA-06 19 9064313 9064313 G A MUC16 Silent p.P7711P 0.39 TCGA-FS-A1ZA-06 19 9067834 9067834 G A MUC16 Missense_Mutation p.P6538S 0.25 unknown(0) TCGA-FS-A1ZA-06 19 9071324 9071324 C T MUC16 Silent p.V5374V 0.37 TCGA-FS-A1ZA-06 19 9072352 9072352 G A MUC16 Missense_Mutation p.P5032S 0.34 unknown(0) TCGA-FS-A1ZA-06 19 9073021 9073021 C T MUC16 Missense_Mutation p.D4809N 0.39 unknown(0) TCGA-FS-A1ZA-06 19 9074696 9074696 C T MUC16 Silent p.T4250T 0.34 TCGA-FS-A1ZA-06 19 9204705 9204705 C T OR1M1 Missense_Mutation p.P262L 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 19 9325175 9325175 G A OR7D4 Silent p.F113F 0.39 TCGA-FS-A1ZA-06 1 10316325 10316325 C T KIF1B Missense_Mutation p.P43S 0.42 tolerated(0.12) probably_damaging(0.984) TCGA-FS-A1ZA-06 1 109358700 109358700 C T AKNAD1 3'UTR 0.76 TCGA-FS-A1ZA-06 1 111060402 111060402 G A KCNA10 Silent p.S336S 0.56 TCGA-FS-A1ZA-06 1 111963999 111963999 G A OVGP1 Missense_Mutation p.R268C 0.66 tolerated(0.18) benign(0.004) TCGA-FS-A1ZA-06 1 11718602 11718602 G A FBXO44 Silent p.K135K 0.53 TCGA-FS-A1ZA-06 1 120168744 120168744 G A ZNF697 5'UTR 0.73 TCGA-FS-A1ZA-06 1 12082327 12082327 C T MIIP Missense_Mutation p.P97L 0.38 tolerated(0.08) possibly_damaging(0.447) TCGA-FS-A1ZA-06 1 12837757 12837757 C T PRAMEF12 3'UTR 0.43 TCGA-FS-A1ZA-06 1 13001263 13001263 C T PRAMEF6 Silent p.R140R 0.27 TCGA-FS-A1ZA-06 1 144922189 144922189 G A PDE4DIP Missense_Mutation p.H327Y 0.22 deleterious(0.01) possibly_damaging(0.767) TCGA-FS-A1ZA-06 1 145498555 145498555 C T LIX1L Missense_Mutation p.S264L 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-FS-A1ZA-06 1 145578693 145578693 C T PIAS3 Nonsense_Mutation p.Q167* 0.60 TCGA-FS-A1ZA-06 1 149858930 149858930 C - HIST2H2AC 3'UTR 0.19 TCGA-FS-A1ZA-06 1 149902812 149902812 G A MTMR11 Nonsense_Mutation p.Q446* 0.52 TCGA-FS-A1ZA-06 1 150923356 150923356 G A SETDB1 Missense_Mutation p.R668Q 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZA-06 1 150933212 150933212 A G SETDB1 Missense_Mutation p.N892D 0.54 tolerated(0.21) benign(0.055) TCGA-FS-A1ZA-06 1 150956527 150956527 C T ANXA9 Silent p.F83F 0.19 TCGA-FS-A1ZA-06 1 151070339 151070339 G T GABPB2 Missense_Mutation p.Q161H 0.36 tolerated(0.07) benign(0.097) TCGA-FS-A1ZA-06 1 151337173 151337173 G A SELENBP1 Missense_Mutation p.S422F 0.24 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZA-06 1 152187683 152187683 C T HRNR Missense_Mutation p.G2141E 0.04 unknown(0) TCGA-FS-A1ZA-06 1 152188229 152188229 C T HRNR Missense_Mutation p.G1959E 0.09 unknown(0) TCGA-FS-A1ZA-06 1 152281696 152281696 G A FLG Missense_Mutation p.S1889F 0.28 possibly_damaging(0.788) TCGA-FS-A1ZA-06 1 152284360 152284360 C T FLG Missense_Mutation p.S1001N 0.26 possibly_damaging(0.833) TCGA-FS-A1ZA-06 1 152326703 152326703 C T FLG2 Missense_Mutation p.D1187N 0.19 unknown(0) TCGA-FS-A1ZA-06 1 152328733 152328733 G A FLG2 Missense_Mutation p.S510F 0.29 unknown(0) TCGA-FS-A1ZA-06 1 152331324 152331324 C T FLG2 Missense_Mutation p.D13N 0.21 unknown(0) TCGA-FS-A1ZA-06 1 152573537 152573537 G A LCE3C 3'UTR 1.00 TCGA-FS-A1ZA-06 1 152770349 152770349 C T LCE1D Missense_Mutation p.P27S 0.89 unknown(0) TCGA-FS-A1ZA-06 1 153043153 153043153 G A SPRR2B Missense_Mutation p.P55S 0.28 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZA-06 1 153283189 153283189 G A PGLYRP3 5'UTR 0.42 TCGA-FS-A1ZA-06 1 153346258 153346258 C T S100A12 3'UTR 0.61 TCGA-FS-A1ZA-06 1 154459014 154459014 C T SHE Silent p.L390L 0.12 TCGA-FS-A1ZA-06 1 154698442 154698442 C T KCNN3 Missense_Mutation p.A551T 0.27 deleterious(0) benign(0.022) TCGA-FS-A1ZA-06 1 156617414 156617414 C G BCAN Missense_Mutation p.A194G 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-FS-A1ZA-06 1 156617415 156617415 C A BCAN Silent p.A194A 0.32 TCGA-FS-A1ZA-06 1 156640515 156640515 G A NES Silent p.S1155S 0.31 TCGA-FS-A1ZA-06 1 156703864 156703864 C T RRNAD1 Silent p.L234L 0.24 TCGA-FS-A1ZA-06 1 156812223 156812223 C T INSRR Silent p.K1068K 0.25 TCGA-FS-A1ZA-06 1 156814327 156814327 G A INSRR Silent p.A888A 0.32 TCGA-FS-A1ZA-06 1 156848950 156848950 G A NTRK1 Silent p.G614G 0.54 TCGA-FS-A1ZA-06 1 157667409 157667409 C T FCRL3 Intron 0.20 TCGA-FS-A1ZA-06 1 158655074 158655074 C T SPTA1 Missense_Mutation p.E30K 0.25 tolerated(0.16) benign(0.045) TCGA-FS-A1ZA-06 1 159162383 159162383 G A CADM3 Missense_Mutation p.R116Q 0.19 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 1 159163717 159163717 C T CADM3 Missense_Mutation p.S227L 0.21 tolerated(0.27) benign(0.065) TCGA-FS-A1ZA-06 1 159284281 159284281 G A OR10J3 Missense_Mutation p.H57Y 0.25 deleterious(0.01) benign(0.216) TCGA-FS-A1ZA-06 1 159858257 159858257 G A CCDC19 Missense_Mutation p.S101F 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-FS-A1ZA-06 1 159901633 159901633 C T IGSF9 Missense_Mutation p.G444E 0.28 deleterious(0) probably_damaging(0.954) TCGA-FS-A1ZA-06 1 160012188 160012188 G T KCNJ10 Silent p.A45A 0.30 TCGA-FS-A1ZA-06 1 160012189 160012189 G T KCNJ10 Missense_Mutation p.A45D 0.27 tolerated(0.7) benign(0.004) TCGA-FS-A1ZA-06 1 160136852 160136852 C T ATP1A4 Silent p.I447I 0.24 TCGA-FS-A1ZA-06 1 160456457 160456457 G A SLAMF6 3'UTR 0.31 TCGA-FS-A1ZA-06 1 160648856 160648856 G A CD48 Silent p.L240L 0.35 TCGA-FS-A1ZA-06 1 161719773 161719773 C T DUSP12 Missense_Mutation p.S61L 0.20 tolerated(0.08) probably_damaging(0.924) TCGA-FS-A1ZA-06 1 161761242 161761242 C T ATF6 Silent p.S133S 0.25 TCGA-FS-A1ZA-06 1 16258177 16258177 G A SPEN Silent p.K1814K 0.40 TCGA-FS-A1ZA-06 1 167096042 167096042 G A DUSP27 Silent p.K558K 0.34 TCGA-FS-A1ZA-06 1 167096701 167096701 C T DUSP27 Missense_Mutation p.S778F 0.35 deleterious(0) possibly_damaging(0.494) TCGA-FS-A1ZA-06 1 167487709 167487709 C T CD247 5'UTR 0.28 TCGA-FS-A1ZA-06 1 167779026 167779026 C T ADCY10 Silent p.T1574T 0.25 TCGA-FS-A1ZA-06 1 168665757 168665757 C T DPT 3'UTR 0.52 TCGA-FS-A1ZA-06 1 16893737 16893737 G A NBPF1 Missense_Mutation p.P926S 0.03 tolerated(0.06) possibly_damaging(0.74) TCGA-FS-A1ZA-06 1 169446428 169446428 G A SLC19A2 Missense_Mutation p.P258S 0.15 tolerated(0.21) benign(0.26) TCGA-FS-A1ZA-06 1 169446429 169446429 G A SLC19A2 Silent p.I257I 0.14 TCGA-FS-A1ZA-06 1 169580879 169580879 C T SELP Missense_Mutation p.G333E 0.50 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZA-06 1 169697230 169697230 C T SELE Silent p.G416G 0.21 TCGA-FS-A1ZA-06 1 172628296 172628296 A G FASLG 5'UTR 0.40 TCGA-FS-A1ZA-06 1 173952757 173952757 G C RC3H1 Missense_Mutation p.R131G 0.31 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 1 175066613 175066613 C T TNN Missense_Mutation p.S550F 0.39 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 1 176525526 176525526 A G PAPPA2 Missense_Mutation p.N23S 0.24 tolerated_low_confidence(0.94) benign(0) TCGA-FS-A1ZA-06 1 176734840 176734840 C T PAPPA2 Missense_Mutation p.P1397L 0.27 tolerated(0.25) benign(0.001) TCGA-FS-A1ZA-06 1 17727763 17727763 G A PADI6 RNA 0.44 TCGA-FS-A1ZA-06 1 178777196 178777196 G A RALGPS2 Missense_Mutation p.G77E 0.31 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZA-06 1 181022797 181022797 G A MR1 Nonsense_Mutation p.W323* 0.26 TCGA-FS-A1ZA-06 1 186023034 186023034 G C HMCN1 Missense_Mutation p.E2260Q 0.28 probably_damaging(0.919) TCGA-FS-A1ZA-06 1 186269336 186269336 T A PRG4 Missense_Mutation p.C64S 0.26 possibly_damaging(0.828) TCGA-FS-A1ZA-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.47 deleterious(0) possibly_damaging(0.871) TCGA-FS-A1ZA-06 1 196227512 196227512 G A KCNT2 Missense_Mutation p.P1008L 0.30 deleterious(0.04) possibly_damaging(0.786) TCGA-FS-A1ZA-06 1 196683013 196683013 G A CFH Silent p.G495G 0.52 TCGA-FS-A1ZA-06 1 196883739 196883739 G A CFHR4 Missense_Mutation p.G431E 0.19 deleterious(0.03) possibly_damaging(0.897) TCGA-FS-A1ZA-06 1 197404165 197404165 G A CRB1 Missense_Mutation p.E1058K 0.33 tolerated(0.7) benign(0.011) TCGA-FS-A1ZA-06 1 197564452 197564452 C T DENND1B Silent p.L311L 0.27 TCGA-FS-A1ZA-06 1 200544813 200544813 C T KIF14 Missense_Mutation p.G1158S 0.23 tolerated(0.72) benign(0.009) TCGA-FS-A1ZA-06 1 201079298 201079298 G C CACNA1S Silent p.L84L 0.25 TCGA-FS-A1ZA-06 1 202197125 202197125 C T LGR6 Silent p.L116L 0.23 TCGA-FS-A1ZA-06 1 202318017 202318017 A G PPP1R12B Missense_Mutation p.E13G 0.22 deleterious(0) possibly_damaging(0.831) TCGA-FS-A1ZA-06 1 203472695 203472695 C T OPTC Silent p.T282T 0.27 TCGA-FS-A1ZA-06 1 203689771 203689771 G A ATP2B4 Missense_Mutation p.R834Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 1 204172104 204172104 C T GOLT1A Missense_Mutation p.G13R 0.65 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 1 205027463 205027463 G A CNTN2 Missense_Mutation p.E124K 0.20 deleterious(0.02) possibly_damaging(0.68) TCGA-FS-A1ZA-06 1 205273115 205273115 C T NUAK2 Silent p.K450K 0.27 TCGA-FS-A1ZA-06 1 206941988 206941988 C T IL10 Missense_Mutation p.R177Q 0.22 tolerated(0.13) benign(0) TCGA-FS-A1ZA-06 1 21014191 21014191 G A KIF17 Missense_Mutation p.S543L 0.30 tolerated_low_confidence(0.2) benign(0) TCGA-FS-A1ZA-06 1 210970995 210970995 G A KCNH1 Silent p.L590L 0.30 TCGA-FS-A1ZA-06 1 212273663 212273663 C T DTL Missense_Mutation p.S444F 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 1 213009459 213009459 C T C1orf227 Missense_Mutation p.M11I 0.22 tolerated(1) benign(0) TCGA-FS-A1ZA-06 1 214537893 214537893 G A PTPN14 Missense_Mutation p.L1133F 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 1 214556954 214556954 G A PTPN14 Silent p.P748P 0.26 TCGA-FS-A1ZA-06 1 216061779 216061779 C T USH2A Missense_Mutation p.D2738N 0.28 benign(0.386) TCGA-FS-A1ZA-06 1 216062314 216062314 G A USH2A Silent p.S2559S 0.16 TCGA-FS-A1ZA-06 1 216062315 216062315 G A USH2A Missense_Mutation p.S2559F 0.17 benign(0.389) TCGA-FS-A1ZA-06 1 216262377 216262377 G A USH2A Silent p.I1621I 0.19 TCGA-FS-A1ZA-06 1 21808248 21808248 C T NBPF3 Missense_Mutation p.S531F 0.65 deleterious(0) possibly_damaging(0.825) TCGA-FS-A1ZA-06 1 21900160 21900160 C T ALPL Missense_Mutation p.L289F 0.29 deleterious(0) probably_damaging(0.918) TCGA-FS-A1ZA-06 1 21904160 21904160 C T ALPL 3'UTR 0.43 TCGA-FS-A1ZA-06 1 220835350 220835350 C T MARK1 Missense_Mutation p.H744Y 0.28 deleterious(0.03) benign(0.103) TCGA-FS-A1ZA-06 1 221057727 221057727 C T HLX Missense_Mutation p.S383F 0.36 tolerated(0.1) benign(0.027) TCGA-FS-A1ZA-06 1 221057728 221057728 C T HLX Silent p.S383S 0.33 TCGA-FS-A1ZA-06 1 225700594 225700594 A G ENAH Missense_Mutation p.M448T 0.51 deleterious(0) probably_damaging(0.936) TCGA-FS-A1ZA-06 1 227333303 227333303 T A CDC42BPA Missense_Mutation p.S344C 0.26 deleterious(0.03) benign(0.004) TCGA-FS-A1ZA-06 1 228003849 228003849 G A PRSS38 Silent p.R69R 0.21 TCGA-FS-A1ZA-06 1 228486395 228486395 C T OBSCN Missense_Mutation p.T4396I 0.29 probably_damaging(0.999) TCGA-FS-A1ZA-06 1 228556533 228556533 C T OBSCN Silent p.S7583S 0.29 TCGA-FS-A1ZA-06 1 229606358 229606358 T C NUP133 Missense_Mutation p.N682S 0.34 tolerated(1) benign(0.004) TCGA-FS-A1ZA-06 1 229623248 229623248 G A NUP133 Missense_Mutation p.S436F 0.21 deleterious(0.02) possibly_damaging(0.697) TCGA-FS-A1ZA-06 1 22974323 22974323 C T C1QC 3'UTR 0.45 TCGA-FS-A1ZA-06 1 231056309 231056309 G A TTC13 Missense_Mutation p.R644W 0.22 deleterious(0) probably_damaging(0.959) TCGA-FS-A1ZA-06 1 232943069 232943069 T A MAP10 Missense_Mutation p.I767N 0.26 deleterious(0.02) possibly_damaging(0.878) TCGA-FS-A1ZA-06 1 233134000 233134000 T C PCNXL2 Missense_Mutation p.T1930A 0.38 tolerated(0.57) benign(0.001) TCGA-FS-A1ZA-06 1 233161126 233161126 C T PCNXL2 Silent p.R1457R 0.28 TCGA-FS-A1ZA-06 1 233394726 233394726 G A PCNXL2 Silent p.S294S 0.28 TCGA-FS-A1ZA-06 1 233807336 233807336 A G KCNK1 3'UTR 0.33 TCGA-FS-A1ZA-06 1 235652509 235652509 G A B3GALNT2 Missense_Mutation p.P109S 0.30 deleterious(0.01) possibly_damaging(0.855) TCGA-FS-A1ZA-06 1 237754053 237754053 G A RYR2 Silent p.P1307P 0.28 TCGA-FS-A1ZA-06 1 237780706 237780706 G A RYR2 Missense_Mutation p.E1946K 0.58 possibly_damaging(0.781) TCGA-FS-A1ZA-06 1 238090447 238090447 C T RP11-193H5.1 RNA 0.21 TCGA-FS-A1ZA-06 1 240969462 240969462 C T RGS7 Missense_Mutation p.R416Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZA-06 1 247582220 247582220 C T NLRP3 Missense_Mutation p.P42S 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZA-06 1 247582221 247582221 C T NLRP3 Missense_Mutation p.P42L 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 1 247769418 247769418 T G OR2G3 Missense_Mutation p.F177L 0.34 deleterious(0.01) benign(0.168) TCGA-FS-A1ZA-06 1 248262729 248262729 C A OR2L13 Missense_Mutation p.P18T 0.49 tolerated(0.08) benign(0.193) TCGA-FS-A1ZA-06 1 248308992 248308992 C T OR2M5 Silent p.F181F 0.27 TCGA-FS-A1ZA-06 1 248402602 248402602 G A OR2M4 Silent p.V124V 0.25 TCGA-FS-A1ZA-06 1 248486965 248486965 C T OR2M7 Missense_Mutation p.M302I 0.29 deleterious(0.01) benign(0.001) TCGA-FS-A1ZA-06 1 26131722 26131722 C T SEPN1 Silent p.L165L 0.31 TCGA-FS-A1ZA-06 1 27094349 27094349 G A ARID1A Silent p.E1019E 0.43 TCGA-FS-A1ZA-06 1 27117270 27117270 C T PIGV 5'UTR 0.32 TCGA-FS-A1ZA-06 1 27697379 27697379 C T FCN3 Missense_Mutation p.E160K 0.27 deleterious(0.01) benign(0.107) TCGA-FS-A1ZA-06 1 3328487 3328487 G A PRDM16 Missense_Mutation p.E576K 0.34 tolerated(0.12) benign(0.018) TCGA-FS-A1ZA-06 1 35227548 35227548 C T GJB4 Silent p.P231P 0.31 TCGA-FS-A1ZA-06 1 35847216 35847216 C T ZMYM4 Missense_Mutation p.R476C 0.31 deleterious(0) possibly_damaging(0.582) TCGA-FS-A1ZA-06 1 35870710 35870710 G A ZMYM4 Silent p.L1205L 0.31 TCGA-FS-A1ZA-06 1 35932273 35932273 G A KIAA0319L Silent p.F379F 0.35 TCGA-FS-A1ZA-06 1 36214053 36214053 G A CLSPN Missense_Mutation p.P809S 0.29 tolerated(0.11) benign(0.396) TCGA-FS-A1ZA-06 1 36638151 36638151 G T MAP7D1 Nonsense_Mutation p.E183* 0.35 TCGA-FS-A1ZA-06 1 38034506 38034506 G A GNL2 Missense_Mutation p.A605V 0.35 deleterious(0.05) possibly_damaging(0.67) TCGA-FS-A1ZA-06 1 38463360 38463360 G A FHL3 Silent p.I228I 0.39 TCGA-FS-A1ZA-06 1 40525125 40525125 C T CAP1 Missense_Mutation p.S36L 0.42 tolerated(0.36) benign(0.049) TCGA-FS-A1ZA-06 1 41218845 41218846 TT A NFYC Frame_Shift_Del p.I105Kfs*19 0.19 TCGA-FS-A1ZA-06 1 41450632 41450632 G C CTPS1 Silent p.R102R 0.41 TCGA-FS-A1ZA-06 1 44069654 44069654 G A PTPRF Missense_Mutation p.R944K 0.34 deleterious(0.03) possibly_damaging(0.514) TCGA-FS-A1ZA-06 1 44070956 44070956 G A PTPRF Silent p.L1077L 0.45 TCGA-FS-A1ZA-06 1 47402363 47402363 G A CYP4A11 Silent p.L161L 0.39 TCGA-FS-A1ZA-06 1 60456423 60456423 G A C1orf87 Silent p.I521I 0.36 TCGA-FS-A1ZA-06 1 61872334 61872334 C G NFIA Missense_Mutation p.P497R 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZA-06 1 6188969 6188969 G A CHD5 Missense_Mutation p.S1183F 0.33 deleterious(0) possibly_damaging(0.887) TCGA-FS-A1ZA-06 1 6214781 6214781 G A CHD5 Silent p.V228V 0.41 TCGA-FS-A1ZA-06 1 62672774 62672774 G A L1TD1 Silent p.K158K 0.33 TCGA-FS-A1ZA-06 1 62739307 62739307 G A KANK4 Missense_Mutation p.S490F 0.27 deleterious(0.03) benign(0.032) TCGA-FS-A1ZA-06 1 65845150 65845150 G A DNAJC6 Silent p.R203R 0.45 TCGA-FS-A1ZA-06 1 67313257 67313257 G A WDR78 Missense_Mutation p.H401Y 0.35 tolerated(0.15) benign(0.019) TCGA-FS-A1ZA-06 1 70614327 70614327 G A LRRC40 Missense_Mutation p.R516C 0.34 deleterious(0.03) benign(0.006) TCGA-FS-A1ZA-06 1 71318408 71318408 G A PTGER3 3'UTR 0.44 TCGA-FS-A1ZA-06 1 75038616 75038616 C T C1orf173 Silent p.A926A 0.33 TCGA-FS-A1ZA-06 1 75086497 75086497 G A C1orf173 Silent p.F307F 0.54 TCGA-FS-A1ZA-06 1 75097441 75097441 G A C1orf173 Missense_Mutation p.R259C 0.23 deleterious(0.01) possibly_damaging(0.695) TCGA-FS-A1ZA-06 1 76398062 76398062 C T ASB17 5'UTR 0.36 TCGA-FS-A1ZA-06 1 79002215 79002215 G A PTGFR Missense_Mutation p.R308Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 1 82433739 82433739 C T LPHN2 Silent p.S776S 0.26 TCGA-FS-A1ZA-06 1 85417942 85417942 T A MCOLN2 Missense_Mutation p.Y244F 0.41 deleterious(0.04) benign(0.03) TCGA-FS-A1ZA-06 1 85575818 85575818 G A WDR63 Missense_Mutation p.D596N 0.25 tolerated(0.1) benign(0.393) TCGA-FS-A1ZA-06 1 85733512 85733512 G A BCL10 Missense_Mutation p.S167F 0.29 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 1 86203099 86203099 G T COL24A1 Missense_Mutation p.P1588T 0.43 tolerated(0.45) benign(0.003) TCGA-FS-A1ZA-06 1 92178031 92178031 C T TGFBR3 Silent p.S645S 0.42 TCGA-FS-A1ZA-06 1 93170289 93170289 C T EVI5 Silent p.T98T 0.34 TCGA-FS-A1ZA-06 1 93303031 93303031 T G RPL5 Silent p.G182G 0.19 TCGA-FS-A1ZA-06 1 9416002 9416002 A T SPSB1 Missense_Mutation p.T18S 0.33 tolerated(1) benign(0.001) TCGA-FS-A1ZA-06 1 94502345 94502345 C T ABCA4 Splice_Site p.X1272_splice 0.36 TCGA-FS-A1ZA-06 1 94640176 94640176 C T ARHGAP29 Missense_Mutation p.R1012K 0.41 deleterious(0.05) possibly_damaging(0.869) TCGA-FS-A1ZA-06 1 94655664 94655664 G A ARHGAP29 Intron 0.38 TCGA-FS-A1ZA-06 1 9793578 9793578 C A CLSTN1 Nonsense_Mutation p.E770* 0.32 TCGA-FS-A1ZA-06 1 98060702 98060702 C T DPYD Missense_Mutation p.D291N 0.43 tolerated(0.4) benign(0.001) TCGA-FS-A1ZA-06 20 16360169 16360169 G A KIF16B Silent p.F826F 0.20 TCGA-FS-A1ZA-06 20 21335474 21335474 C T XRN2 Silent p.L662L 0.16 TCGA-FS-A1ZA-06 20 2378688 2378688 C T TGM6 Missense_Mutation p.A223V 0.74 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZA-06 20 25656124 25656124 G A ZNF337 Silent p.F600F 0.13 TCGA-FS-A1ZA-06 20 2591082 2591082 C T TMC2 Silent p.S477S 0.61 TCGA-FS-A1ZA-06 20 31829206 31829206 C T BPIFA1 Silent p.P199P 0.59 TCGA-FS-A1ZA-06 20 32328812 32328812 C T ZNF341 Missense_Mutation p.P46S 0.19 tolerated(0.93) benign(0.023) TCGA-FS-A1ZA-06 20 32850692 32850692 C T ASIP Missense_Mutation p.S72F 0.71 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZA-06 20 33703686 33703686 G A EDEM2 Silent p.F429F 0.71 TCGA-FS-A1ZA-06 20 33875396 33875396 G A FAM83C Missense_Mutation p.R396C 0.15 tolerated_low_confidence(0.1) benign(0.064) TCGA-FS-A1ZA-06 20 35467683 35467683 G A SOGA1 Silent p.L283L 0.65 TCGA-FS-A1ZA-06 20 35683995 35683995 C T RBL1 Missense_Mutation p.M476I 0.36 tolerated(1) benign(0.012) TCGA-FS-A1ZA-06 20 40710649 40710649 C T PTPRT Missense_Mutation p.G1382E 0.14 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 20 42682962 42682962 A C TOX2 Silent p.S225S 0.69 TCGA-FS-A1ZA-06 20 42694485 42694485 G T TOX2 Missense_Mutation p.R365L 0.23 tolerated(0.19) benign(0.194) TCGA-FS-A1ZA-06 20 42788484 42788484 C T JPH2 Missense_Mutation p.E315K 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 20 44049272 44049272 C T PIGT Silent p.A324A 0.62 TCGA-FS-A1ZA-06 20 44453461 44453461 C T TNNC2 Missense_Mutation p.A6T 0.16 tolerated(0.15) benign(0) TCGA-FS-A1ZA-06 20 44538677 44538677 G A PLTP Missense_Mutation p.S78F 0.65 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZA-06 20 44581340 44581340 G A ZNF335 Missense_Mutation p.P904L 0.14 tolerated(0.08) benign(0.097) TCGA-FS-A1ZA-06 20 44695779 44695779 G A NCOA5 Missense_Mutation p.R182C 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-FS-A1ZA-06 20 45725732 45725732 C T EYA2 Silent p.F271F 0.54 TCGA-FS-A1ZA-06 20 47733721 47733721 G A STAU1 Missense_Mutation p.S525F 0.72 deleterious(0.02) benign(0.013) TCGA-FS-A1ZA-06 20 50235535 50235535 C T ATP9A Silent p.R721R 0.77 TCGA-FS-A1ZA-06 20 50701121 50701121 G A ZFP64 Missense_Mutation p.P638L 0.20 deleterious_low_confidence(0.01) benign(0.01) TCGA-FS-A1ZA-06 20 51870578 51870578 C T TSHZ2 Missense_Mutation p.S194L 0.62 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 20 51871590 51871590 C T TSHZ2 Silent p.A531A 0.13 TCGA-FS-A1ZA-06 20 52645262 52645262 T A BCAS1 Missense_Mutation p.N131I 0.13 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZA-06 20 55027160 55027160 C T CASS4 Missense_Mutation p.P310S 0.60 tolerated(0.14) benign(0.08) TCGA-FS-A1ZA-06 20 56078497 56078497 C T CTCFL Missense_Mutation p.G612E 0.14 tolerated(1) benign(0.004) TCGA-FS-A1ZA-06 20 58560113 58560113 T C CDH26 Missense_Mutation p.S256P 0.62 deleterious(0) possibly_damaging(0.662) TCGA-FS-A1ZA-06 20 60485517 60485517 G A CDH4 Missense_Mutation p.V410I 0.19 tolerated(0.21) probably_damaging(0.931) TCGA-FS-A1ZA-06 20 60503400 60503400 C T CDH4 Missense_Mutation p.P642S 0.60 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZA-06 20 61511017 61511017 C T DIDO1 Silent p.E2097E 0.61 TCGA-FS-A1ZA-06 20 8639324 8639324 G A PLCB1 Missense_Mutation p.E279K 0.16 deleterious(0) probably_damaging(0.964) TCGA-FS-A1ZA-06 20 9434098 9434098 G A PLCB4 Missense_Mutation p.M983I 0.69 tolerated(0.73) benign(0) TCGA-FS-A1ZA-06 20 9543656 9543656 C T PAK7 Missense_Mutation p.D500N 0.73 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZA-06 21 10921986 10921986 C T TPTE Missense_Mutation p.G346E 0.11 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZA-06 21 10934106 10934106 C T TPTE Missense_Mutation p.D291N 0.13 tolerated(0.16) possibly_damaging(0.55) TCGA-FS-A1ZA-06 21 10941939 10941939 C T TPTE Missense_Mutation p.G255E 0.18 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 21 10996093 10996093 C T TPTE RNA 0.29 TCGA-FS-A1ZA-06 21 15882643 15882643 G A SAMSN1 Silent p.S251S 0.38 TCGA-FS-A1ZA-06 21 27071113 27071113 C T JAM2 Silent p.I173I 0.21 TCGA-FS-A1ZA-06 21 42064790 42064790 C T DSCAM Missense_Mutation p.E152K 0.40 tolerated(0.64) possibly_damaging(0.542) TCGA-FS-A1ZA-06 21 43171321 43171321 A G RIPK4 Missense_Mutation p.Y187H 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 21 43531690 43531690 G A UMODL1 Nonsense_Mutation p.W786* 0.20 TCGA-FS-A1ZA-06 21 43913094 43913094 G A RSPH1 Silent p.F50F 0.50 TCGA-FS-A1ZA-06 21 45786768 45786768 G A TRPM2 Silent p.R185R 0.27 TCGA-FS-A1ZA-06 21 45786782 45786782 T A TRPM2 Missense_Mutation p.F190Y 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZA-06 21 45876823 45876823 C T LRRC3 Missense_Mutation p.A99V 0.18 tolerated(0.15) benign(0.1) TCGA-FS-A1ZA-06 21 46020845 46020845 C T KRTAP10-7 Silent p.S108S 0.22 TCGA-FS-A1ZA-06 21 46645361 46645361 C T ADARB1 3'UTR 0.21 TCGA-FS-A1ZA-06 21 47532471 47532471 A G COL6A2 Missense_Mutation p.N232D 0.21 tolerated(1) benign(0.007) TCGA-FS-A1ZA-06 21 47574192 47574192 C T FTCD Missense_Mutation p.D37N 0.33 tolerated(0.1) benign(0.36) TCGA-FS-A1ZA-06 22 19396072 19396072 G A HIRA Missense_Mutation p.L49F 0.37 tolerated(0.06) benign(0.235) TCGA-FS-A1ZA-06 22 19960554 19960554 G A ARVCF Missense_Mutation p.S815L 0.50 deleterious(0) benign(0.279) TCGA-FS-A1ZA-06 22 21173974 21173974 C T PI4KA Silent p.E248E 0.53 TCGA-FS-A1ZA-06 22 23011173 23011173 G A IGLV3-27 Missense_Mutation p.R79Q 0.38 deleterious(0.04) possibly_damaging(0.533) TCGA-FS-A1ZA-06 22 28193636 28193636 G A MN1 Missense_Mutation p.P966S 0.43 benign(0.356) TCGA-FS-A1ZA-06 22 29534816 29534816 T C KREMEN1 Missense_Mutation p.V390A 0.33 tolerated_low_confidence(0.42) benign(0.036) TCGA-FS-A1ZA-06 22 31003345 31003345 C T TCN2 Silent p.F9F 0.28 TCGA-FS-A1ZA-06 22 31003346 31003346 C T TCN2 Missense_Mutation p.L10F 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZA-06 22 31979912 31979912 G A SFI1 Missense_Mutation p.E434K 0.32 deleterious(0.01) benign(0.303) TCGA-FS-A1ZA-06 22 37914095 37914095 G C CARD10 Missense_Mutation p.R86G 0.52 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A1ZA-06 22 38212689 38212689 C T GCAT Silent p.F434F 0.40 TCGA-FS-A1ZA-06 22 38474640 38474640 C T SLC16A8 Missense_Mutation p.G424R 0.20 deleterious(0) probably_damaging(0.944) TCGA-FS-A1ZA-06 22 38891816 38891816 G A DDX17 Nonsense_Mutation p.R289* 0.47 TCGA-FS-A1ZA-06 22 39219155 39219155 G A NPTXR Missense_Mutation p.S404F 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-FS-A1ZA-06 22 40078631 40078631 C T CACNA1I Missense_Mutation p.P1932L 0.32 tolerated(0.07) possibly_damaging(0.713) TCGA-FS-A1ZA-06 22 40283601 40283601 G A ENTHD1 Missense_Mutation p.S51L 0.39 tolerated(0.08) possibly_damaging(0.817) TCGA-FS-A1ZA-06 22 41913580 41913580 C T ACO2 Silent p.S295S 0.35 TCGA-FS-A1ZA-06 22 46748035 46748035 C T TRMU Silent p.F223F 0.27 TCGA-FS-A1ZA-06 22 47064595 47064595 G A GRAMD4 Missense_Mutation p.G314R 0.30 deleterious(0.02) possibly_damaging(0.557) TCGA-FS-A1ZA-06 22 47064596 47064596 G A GRAMD4 Missense_Mutation p.G314E 0.29 tolerated(0.05) possibly_damaging(0.889) TCGA-FS-A1ZA-06 22 50355388 50355388 C T PIM3 Missense_Mutation p.S182F 0.35 deleterious(0) benign(0.248) TCGA-FS-A1ZA-06 22 50719037 50719037 G A PLXNB2 Silent p.S1352S 0.35 TCGA-FS-A1ZA-06 22 50719043 50719043 G A PLXNB2 Silent p.F1350F 0.36 TCGA-FS-A1ZA-06 2 101670582 101670582 G A TBC1D8 Silent p.L192L 0.50 TCGA-FS-A1ZA-06 2 10350492 10350492 C T C2orf48 Silent p.L83L 0.35 TCGA-FS-A1ZA-06 2 107073457 107073457 G A RGPD3 Silent p.F125F 0.43 TCGA-FS-A1ZA-06 2 114002156 114002156 G A PAX8 Silent p.S79S 0.33 TCGA-FS-A1ZA-06 2 11741077 11741077 A G GREB1 Missense_Mutation p.I829V 0.35 tolerated(0.09) benign(0.003) TCGA-FS-A1ZA-06 2 121744126 121744126 C T GLI2 Silent p.S743S 0.37 TCGA-FS-A1ZA-06 2 125192186 125192186 T C CNTNAP5 Missense_Mutation p.F219L 0.30 tolerated(1) benign(0.075) TCGA-FS-A1ZA-06 2 128354112 128354112 C T MYO7B Missense_Mutation p.L774F 0.50 deleterious(0.05) possibly_damaging(0.661) TCGA-FS-A1ZA-06 2 130738551 130738551 A G RAB6C 3'UTR 0.38 TCGA-FS-A1ZA-06 2 131976449 131976449 C T POTEE Silent p.I158I 0.18 TCGA-FS-A1ZA-06 2 133531389 133531389 C T NCKAP5 Missense_Mutation p.E1710K 0.39 tolerated(0.08) possibly_damaging(0.773) TCGA-FS-A1ZA-06 2 135781078 135781078 G A MAP3K19 Intron 0.32 TCGA-FS-A1ZA-06 2 136564955 136564955 C T LCT Missense_Mutation p.D1306N 0.44 deleterious(0.01) possibly_damaging(0.573) TCGA-FS-A1ZA-06 2 137852488 137852488 C T THSD7B Silent p.I332I 0.39 TCGA-FS-A1ZA-06 2 139307791 139307791 C T SPOPL Missense_Mutation p.S2F 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-FS-A1ZA-06 2 1459899 1459899 G A TPO Missense_Mutation p.D222N 0.50 tolerated(0.09) benign(0.348) TCGA-FS-A1ZA-06 2 149240828 149240828 C T MBD5 Missense_Mutation p.P890S 0.48 tolerated(0.05) possibly_damaging(0.803) TCGA-FS-A1ZA-06 2 152359377 152359377 C T NEB Missense_Mutation p.G7953E 0.43 possibly_damaging(0.822) TCGA-FS-A1ZA-06 2 160710154 160710154 C T LY75-CD302 Missense_Mutation p.D884N 0.40 tolerated(0.34) benign(0) TCGA-FS-A1ZA-06 2 160801487 160801487 C T PLA2R1 Silent p.R1358R 0.30 TCGA-FS-A1ZA-06 2 162274197 162274197 C T TBR1 Missense_Mutation p.P235S 0.29 deleterious(0.01) possibly_damaging(0.742) TCGA-FS-A1ZA-06 2 163374555 163374555 C T KCNH7 Missense_Mutation p.D193N 0.39 tolerated(0.12) benign(0.01) TCGA-FS-A1ZA-06 2 166172127 166172127 G A SCN2A Silent p.Q510Q 0.23 TCGA-FS-A1ZA-06 2 166243376 166243376 G A SCN2A Missense_Mutation p.E1558K 0.38 tolerated(0.19) benign(0.06) TCGA-FS-A1ZA-06 2 166514388 166514388 G A CSRNP3 Missense_Mutation p.G89E 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 2 166535902 166535902 C T CSRNP3 Missense_Mutation p.S466L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-FS-A1ZA-06 2 166866236 166866236 C T SCN1A Missense_Mutation p.G1332E 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 2 167055491 167055491 C T SCN9A Silent p.R1875R 0.40 TCGA-FS-A1ZA-06 2 167137063 167137063 C T SCN9A Missense_Mutation p.R705K 0.43 tolerated(1) benign(0) TCGA-FS-A1ZA-06 2 167262832 167262832 C T SCN7A Nonsense_Mutation p.W1436* 0.30 TCGA-FS-A1ZA-06 2 168101944 168101944 C T XIRP2 Nonsense_Mutation p.R1348* 0.37 TCGA-FS-A1ZA-06 2 168108439 168108439 G A XIRP2 Missense_Mutation p.E3513K 0.38 possibly_damaging(0.713) TCGA-FS-A1ZA-06 2 168726556 168726556 C T B3GALT1 3'UTR 0.54 TCGA-FS-A1ZA-06 2 169791706 169791706 C T ABCB11 Missense_Mutation p.S1015N 0.41 tolerated(0.16) benign(0.046) TCGA-FS-A1ZA-06 2 170096222 170096222 C T LRP2 Missense_Mutation p.G1370E 0.34 probably_damaging(1) TCGA-FS-A1ZA-06 2 170493773 170493773 C T PPIG Missense_Mutation p.R669C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZA-06 2 171092559 171092559 C T MYO3B Missense_Mutation p.S221F 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 2 172841174 172841174 C T HAT1 Missense_Mutation p.S301F 0.20 deleterious(0) possibly_damaging(0.538) TCGA-FS-A1ZA-06 2 174228142 174228142 G A CDCA7 Missense_Mutation p.M191I 0.50 tolerated(0.12) benign(0.037) TCGA-FS-A1ZA-06 2 179427557 179427557 T C TTN Missense_Mutation p.S27768G 0.21 TCGA-FS-A1ZA-06 2 179439073 179439073 C T TTN Missense_Mutation p.G23929E 0.33 TCGA-FS-A1ZA-06 2 179441334 179441334 G A TTN Missense_Mutation p.R23213C 0.34 TCGA-FS-A1ZA-06 2 179443621 179443621 C T TTN Missense_Mutation p.M22712I 0.25 TCGA-FS-A1ZA-06 2 179452456 179452456 G A TTN Missense_Mutation p.L21194F 0.48 TCGA-FS-A1ZA-06 2 179522846 179522846 G A TTN Missense_Mutation p.P12584S 0.31 TCGA-FS-A1ZA-06 2 179529447 179529447 C T TTN Missense_Mutation p.E12046K 0.25 TCGA-FS-A1ZA-06 2 179553825 179553825 C T TTN Missense_Mutation p.V10684I 0.26 TCGA-FS-A1ZA-06 2 179566927 179566927 C T TTN Missense_Mutation p.R10160K 0.21 TCGA-FS-A1ZA-06 2 179569645 179569645 C T TTN Missense_Mutation p.E9885K 0.37 TCGA-FS-A1ZA-06 2 179586847 179586847 G A TTN Missense_Mutation p.P7515S 0.40 TCGA-FS-A1ZA-06 2 179595317 179595317 C T TTN Silent p.L5981L 0.47 TCGA-FS-A1ZA-06 2 179597199 179597199 C T TTN Missense_Mutation p.G5530E 0.35 TCGA-FS-A1ZA-06 2 179604492 179604492 C T TTN Missense_Mutation p.A4490T 0.20 TCGA-FS-A1ZA-06 2 179613203 179613203 C T TTN Intron 0.36 TCGA-FS-A1ZA-06 2 179615154 179615154 G A TTN Intron 0.42 TCGA-FS-A1ZA-06 2 179616367 179616367 C T TTN Intron 0.38 TCGA-FS-A1ZA-06 2 179650739 179650739 C T TTN Missense_Mutation p.G736R 0.33 TCGA-FS-A1ZA-06 2 179655479 179655479 C T TTN Missense_Mutation p.E586K 0.35 TCGA-FS-A1ZA-06 2 185800856 185800856 G A ZNF804A Missense_Mutation p.G245R 0.33 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 185801225 185801225 G A ZNF804A Missense_Mutation p.D368N 0.27 deleterious(0.05) benign(0.14) TCGA-FS-A1ZA-06 2 187531934 187531934 T A ITGAV Silent p.V768V 0.39 TCGA-FS-A1ZA-06 2 189901355 189901355 T C COL5A2 Missense_Mutation p.N1367S 0.48 unknown(0) TCGA-FS-A1ZA-06 2 189932833 189932833 G A COL5A2 Missense_Mutation p.P437S 0.49 benign(0.265) TCGA-FS-A1ZA-06 2 191905875 191905875 C T STAT4 Splice_Site p.X418_splice 0.25 TCGA-FS-A1ZA-06 2 192550392 192550392 C T NABP1 Silent p.G171G 0.25 TCGA-FS-A1ZA-06 2 192550393 192550393 C T NABP1 Missense_Mutation p.R172W 0.25 deleterious(0.02) benign(0.022) TCGA-FS-A1ZA-06 2 192701141 192701141 G A SDPR Silent p.I262I 0.28 TCGA-FS-A1ZA-06 2 196636429 196636429 C T DNAH7 Silent p.L3796L 0.32 TCGA-FS-A1ZA-06 2 196722428 196722428 G A DNAH7 Missense_Mutation p.S2696F 0.46 deleterious(0) probably_damaging(0.936) TCGA-FS-A1ZA-06 2 196822128 196822128 C T DNAH7 Missense_Mutation p.E979K 0.42 tolerated(0.08) possibly_damaging(0.752) TCGA-FS-A1ZA-06 2 196825422 196825422 G A DNAH7 Missense_Mutation p.P818L 0.38 deleterious(0.02) possibly_damaging(0.847) TCGA-FS-A1ZA-06 2 197870442 197870442 G A ANKRD44 Missense_Mutation p.P750S 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 203846296 203846296 C T CARF Missense_Mutation p.S526L 0.31 tolerated(0.06) benign(0.009) TCGA-FS-A1ZA-06 2 206165332 206165332 C T PARD3B Missense_Mutation p.A693V 0.43 deleterious(0) probably_damaging(0.97) TCGA-FS-A1ZA-06 2 206592670 206592670 C T NRP2 Missense_Mutation p.S349F 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 2 207176154 207176154 T C ZDBF2 Missense_Mutation p.V2301A 0.27 tolerated(1) benign(0) TCGA-FS-A1ZA-06 2 208841613 208841613 G A PLEKHM3 Silent p.L436L 0.40 TCGA-FS-A1ZA-06 2 208865975 208865975 G A PLEKHM3 Missense_Mutation p.P130L 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 209046021 209046021 G A C2orf80 Missense_Mutation p.P72L 0.38 deleterious(0.05) benign(0.057) TCGA-FS-A1ZA-06 2 211473172 211473172 C T CPS1 Silent p.A766A 0.41 TCGA-FS-A1ZA-06 2 21230676 21230676 C T APOB Missense_Mutation p.D3022N 0.38 benign(0.001) TCGA-FS-A1ZA-06 2 212426678 212426678 C T ERBB4 Missense_Mutation p.D813N 0.43 deleterious(0.01) possibly_damaging(0.555) TCGA-FS-A1ZA-06 2 212488718 212488718 G A ERBB4 Missense_Mutation p.R711C 0.35 deleterious(0.02) probably_damaging(0.976) TCGA-FS-A1ZA-06 2 212587137 212587137 G A ERBB4 Silent p.F288F 0.30 TCGA-FS-A1ZA-06 2 213291021 213291021 G A ERBB4 Intron 0.44 TCGA-FS-A1ZA-06 2 215818596 215818596 G A ABCA12 Missense_Mutation p.S2210F 0.40 tolerated(0.7) benign(0.001) TCGA-FS-A1ZA-06 2 215818600 215818600 C T ABCA12 Missense_Mutation p.E2209K 0.38 tolerated(0.84) benign(0.094) TCGA-FS-A1ZA-06 2 219563402 219563402 C T STK36 Silent p.P1045P 0.38 TCGA-FS-A1ZA-06 2 219617875 219617875 C T TTLL4 Silent p.F1075F 0.34 TCGA-FS-A1ZA-06 2 219617876 219617876 C T TTLL4 Missense_Mutation p.H1076Y 0.34 deleterious(0) probably_damaging(0.912) TCGA-FS-A1ZA-06 2 219677772 219677772 G A CYP27A1 Missense_Mutation p.E324K 0.43 deleterious(0) possibly_damaging(0.809) TCGA-FS-A1ZA-06 2 219870227 219870227 G A CCDC108 Silent p.S1660S 0.41 TCGA-FS-A1ZA-06 2 219870228 219870228 G T CCDC108 Missense_Mutation p.S1660Y 0.40 tolerated(0.48) benign(0.359) TCGA-FS-A1ZA-06 2 222298879 222298879 C T EPHA4 Missense_Mutation p.D827N 0.47 tolerated(0.23) possibly_damaging(0.814) TCGA-FS-A1ZA-06 2 223554070 223554070 G A MOGAT1 Silent p.G120G 0.43 TCGA-FS-A1ZA-06 2 223773456 223773456 C T ACSL3 5'UTR 0.40 TCGA-FS-A1ZA-06 2 223773608 223773608 C T ACSL3 Missense_Mutation p.P40S 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 227875158 227875158 C T COL4A4 Missense_Mutation p.G1465S 0.47 unknown(0) TCGA-FS-A1ZA-06 2 227924164 227924164 C T COL4A4 Silent p.G780G 0.37 TCGA-FS-A1ZA-06 2 227979412 227979412 C T COL4A4 Missense_Mutation p.G164S 0.21 probably_damaging(1) TCGA-FS-A1ZA-06 2 228884543 228884543 C T SPHKAP Missense_Mutation p.D343N 0.38 tolerated(0.25) benign(0.008) TCGA-FS-A1ZA-06 2 230632389 230632389 G A TRIP12 Missense_Mutation p.P1954S 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 232660846 232660846 C T COPS7B Silent p.L120L 0.35 TCGA-FS-A1ZA-06 2 234581418 234581418 G A UGT1A9 Missense_Mutation p.G280R 0.51 tolerated(0.63) benign(0.168) TCGA-FS-A1ZA-06 2 234681080 234681080 G A UGT1A4 Missense_Mutation p.G494S 0.45 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZA-06 2 234774950 234774950 C T MSL3P1 RNA 0.39 TCGA-FS-A1ZA-06 2 238247693 238247693 G A COL6A3 Silent p.P2844P 0.37 TCGA-FS-A1ZA-06 2 238726791 238726791 C T RBM44 Missense_Mutation p.S411F 0.38 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZA-06 2 239141113 239141113 G A AC016757.3 5'Flank 0.32 TCGA-FS-A1ZA-06 2 240984529 240984529 C T OR6B3 Missense_Mutation p.E321K 0.35 tolerated_low_confidence(0.4) benign(0) TCGA-FS-A1ZA-06 2 241831030 241831030 C T C2orf54 Missense_Mutation p.G222E 0.44 deleterious(0.03) possibly_damaging(0.883) TCGA-FS-A1ZA-06 2 241831031 241831031 C T C2orf54 Missense_Mutation p.G222R 0.42 deleterious(0.01) benign(0.219) TCGA-FS-A1ZA-06 2 24533432 24533432 G A ITSN2 Missense_Mutation p.S161F 0.36 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 2 26677515 26677515 G A DRC1 Silent p.R640R 0.35 TCGA-FS-A1ZA-06 2 27167534 27167534 T C DPYSL5 Missense_Mutation p.V484A 0.22 tolerated(0.52) benign(0) TCGA-FS-A1ZA-06 2 27276421 27276421 C T AGBL5 Nonsense_Mutation p.R123* 0.42 TCGA-FS-A1ZA-06 2 28816855 28816855 T C PLB1 Intron 0.40 TCGA-FS-A1ZA-06 2 31010211 31010211 C T CAPN13 5'UTR 0.21 TCGA-FS-A1ZA-06 2 31154962 31154962 G A GALNT14 Missense_Mutation p.P349S 0.56 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 33002965 33002965 C T TTC27 Missense_Mutation p.S566F 0.41 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZA-06 2 33468816 33468816 G A LTBP1 Missense_Mutation p.G655E 0.46 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZA-06 2 37036010 37036010 C T VIT Silent p.F595F 0.33 TCGA-FS-A1ZA-06 2 37374038 37374038 G A EIF2AK2 Silent p.A66A 0.28 TCGA-FS-A1ZA-06 2 37374039 37374039 G A EIF2AK2 Missense_Mutation p.A66V 0.23 tolerated(0.07) possibly_damaging(0.846) TCGA-FS-A1ZA-06 2 37480284 37480284 A T PRKD3 3'UTR 0.42 TCGA-FS-A1ZA-06 2 38298407 38298407 C T CYP1B1 Missense_Mutation p.V364M 0.33 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 2 39050298 39050298 A G DHX57 Missense_Mutation p.L1043S 0.32 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 2 45233327 45233327 G A SIX2 Silent p.L286L 0.35 TCGA-FS-A1ZA-06 2 46203596 46203596 C T PRKCE Silent p.F147F 0.41 TCGA-FS-A1ZA-06 2 48681813 48681813 T C PPP1R21 Missense_Mutation p.L69P 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 2 49381436 49381436 G A FSHR Missense_Mutation p.P41S 0.22 tolerated(0.09) benign(0.064) TCGA-FS-A1ZA-06 2 51253597 51253597 G A NRXN1 Silent p.F261F 0.45 TCGA-FS-A1ZA-06 2 55561343 55561343 C T CCDC88A Missense_Mutation p.E872K 0.35 deleterious(0) possibly_damaging(0.615) TCGA-FS-A1ZA-06 2 60687491 60687491 G A BCL11A 3'UTR 0.38 TCGA-FS-A1ZA-06 2 69093535 69093535 A C BMP10 Missense_Mutation p.F168C 0.41 deleterious(0.02) possibly_damaging(0.877) TCGA-FS-A1ZA-06 2 69173470 69173470 G A GKN2 Silent p.I146I 0.42 TCGA-FS-A1ZA-06 2 69650786 69650786 C T NFU1 Missense_Mutation p.G77E 0.32 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZA-06 2 69650787 69650787 C T NFU1 Missense_Mutation p.G77R 0.30 deleterious(0.01) possibly_damaging(0.873) TCGA-FS-A1ZA-06 2 70408972 70408972 G A C2orf42 Missense_Mutation p.T49I 0.32 tolerated(0.39) benign(0.11) TCGA-FS-A1ZA-06 2 70890536 70890536 G A ADD2 3'UTR 0.53 TCGA-FS-A1ZA-06 2 71753380 71753380 G A DYSF Missense_Mutation p.E394K 0.40 deleterious(0.04) probably_damaging(0.954) TCGA-FS-A1ZA-06 2 71840485 71840485 C T DYSF Missense_Mutation p.P1470L 0.46 deleterious(0.01) benign(0.072) TCGA-FS-A1ZA-06 2 72360286 72360286 G A CYP26B1 Missense_Mutation p.P338S 0.58 tolerated(0.78) benign(0.007) TCGA-FS-A1ZA-06 2 73651716 73651716 C T ALMS1 Missense_Mutation p.S308F 0.28 possibly_damaging(0.878) TCGA-FS-A1ZA-06 2 74274556 74274556 C T TET3 Silent p.S369S 0.53 TCGA-FS-A1ZA-06 2 74274557 74274557 C T TET3 Missense_Mutation p.P370S 0.47 tolerated(0.34) benign(0.21) TCGA-FS-A1ZA-06 2 74702736 74702736 T A CCDC142 Intron 0.31 TCGA-FS-A1ZA-06 2 75720659 75720659 C T EVA1A Silent p.V54V 0.29 TCGA-FS-A1ZA-06 2 80808870 80808870 G A CTNNA2 Missense_Mutation p.E645K 0.40 deleterious(0.01) possibly_damaging(0.547) TCGA-FS-A1ZA-06 2 86439478 86439478 G A MRPL35 3'UTR 0.30 TCGA-FS-A1ZA-06 2 89309641 89309641 C T IGKV1-9 Silent p.G63G 0.35 TCGA-FS-A1ZA-06 2 90193170 90193170 C T IGKV1D-13 Silent p.L33L 0.36 TCGA-FS-A1ZA-06 2 90259824 90259824 C T IGKV1D-8 Silent p.L17L 0.32 TCGA-FS-A1ZA-06 2 95815961 95815961 G A ZNF514 Missense_Mutation p.S90F 0.32 tolerated(0.16) benign(0.036) TCGA-FS-A1ZA-06 2 95954033 95954033 G A PROM2 Missense_Mutation p.M773I 0.35 tolerated(0.36) benign(0.412) TCGA-FS-A1ZA-06 2 9607863 9607863 T C CPSF3 Missense_Mutation p.L605S 0.37 tolerated(0.87) benign(0.004) TCGA-FS-A1ZA-06 2 97475042 97475042 C T CNNM4 Intron 0.44 TCGA-FS-A1ZA-06 2 99008427 99008427 C T CNGA3 Missense_Mutation p.R223W 0.58 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 2 99695147 99695147 G A TSGA10 Missense_Mutation p.S286F 0.32 tolerated(0.05) possibly_damaging(0.885) TCGA-FS-A1ZA-06 3 10028381 10028381 G A EMC3 5'UTR 0.62 TCGA-FS-A1ZA-06 3 100373862 100373862 C T GPR128 Silent p.I521I 0.60 TCGA-FS-A1ZA-06 3 100387893 100387893 G A GPR128 Missense_Mutation p.D694N 0.36 tolerated(1) benign(0.015) TCGA-FS-A1ZA-06 3 10384469 10384469 G A ATP2B2 Nonsense_Mutation p.Q962* 0.24 TCGA-FS-A1ZA-06 3 10442734 10442734 G A ATP2B2 Silent p.F228F 0.71 TCGA-FS-A1ZA-06 3 108475946 108475946 G A RETNLB Silent p.S29S 0.60 TCGA-FS-A1ZA-06 3 108773680 108773680 C T MORC1 Missense_Mutation p.E409K 0.56 deleterious(0.01) benign(0.141) TCGA-FS-A1ZA-06 3 109049332 109049332 C T DPPA4 Intron 0.73 TCGA-FS-A1ZA-06 3 111264049 111264049 C T CD96 Missense_Mutation p.P73L 0.24 deleterious(0) probably_damaging(0.955) TCGA-FS-A1ZA-06 3 111298075 111298075 G A CD96 Missense_Mutation p.V265I 0.47 deleterious(0.03) probably_damaging(0.987) TCGA-FS-A1ZA-06 3 111685506 111685506 T C PHLDB2 Silent p.L1042L 0.67 TCGA-FS-A1ZA-06 3 111958713 111958713 C T SLC9C1 Missense_Mutation p.A474T 0.61 tolerated(0.12) benign(0.063) TCGA-FS-A1ZA-06 3 112066667 112066667 C T CD200 Silent p.T253T 0.45 TCGA-FS-A1ZA-06 3 112538652 112538652 C T CD200R1L Missense_Mutation p.G257E 0.53 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 3 113218403 113218403 C T SPICE1 Silent p.S58S 0.25 TCGA-FS-A1ZA-06 3 113804627 113804627 C T QTRTD1 Missense_Mutation p.A387V 0.19 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 3 113804628 113804628 C T QTRTD1 Silent p.A387A 0.18 TCGA-FS-A1ZA-06 3 119325753 119325753 G A PLA1A Missense_Mutation p.G69E 0.46 tolerated(1) benign(0.004) TCGA-FS-A1ZA-06 3 122134306 122134306 C T WDR5B Missense_Mutation p.E24K 0.19 tolerated(0.73) benign(0.009) TCGA-FS-A1ZA-06 3 123376156 123376156 C T MYLK Missense_Mutation p.E1369K 0.23 deleterious(0) benign(0.301) TCGA-FS-A1ZA-06 3 123419745 123419745 C T MYLK Missense_Mutation p.G857E 0.47 tolerated(0.24) benign(0.042) TCGA-FS-A1ZA-06 3 124397085 124397085 G A KALRN Silent p.V717V 0.23 TCGA-FS-A1ZA-06 3 128712088 128712088 G A KIAA1257 Silent p.S20S 0.54 TCGA-FS-A1ZA-06 3 130285597 130285597 G A COL6A6 Missense_Mutation p.G445E 0.56 deleterious(0.02) probably_damaging(0.943) TCGA-FS-A1ZA-06 3 132347190 132347190 G A ACAD11 Missense_Mutation p.S355F 0.38 tolerated(0.77) benign(0.036) TCGA-FS-A1ZA-06 3 13378289 13378289 C T NUP210 Missense_Mutation p.E1228K 0.56 tolerated(0.08) benign(0.234) TCGA-FS-A1ZA-06 3 136139954 136139954 G A STAG1 Missense_Mutation p.R697W 0.15 deleterious(0) probably_damaging(0.92) TCGA-FS-A1ZA-06 3 138352042 138352042 A T FAIM 3'UTR 0.90 TCGA-FS-A1ZA-06 3 138738740 138738740 G A PRR23B Missense_Mutation p.P255L 0.20 tolerated(0.38) benign(0.016) TCGA-FS-A1ZA-06 3 141231116 141231116 C T RASA2 Missense_Mutation p.S82F 0.46 deleterious(0) probably_damaging(0.977) TCGA-FS-A1ZA-06 3 142281947 142281947 G A ATR Silent p.F99F 0.57 TCGA-FS-A1ZA-06 3 1444146 1444146 G A CNTN6 Missense_Mutation p.E988K 0.55 tolerated(0.08) benign(0.059) TCGA-FS-A1ZA-06 3 149051063 149051063 G A TM4SF18 Missense_Mutation p.S36F 0.65 tolerated(0.11) benign(0.024) TCGA-FS-A1ZA-06 3 150129006 150129006 C T TSC22D2 Silent p.S623S 0.47 TCGA-FS-A1ZA-06 3 151171355 151171355 A G IGSF10 Missense_Mutation p.Y178H 0.22 tolerated(0.1) benign(0.063) TCGA-FS-A1ZA-06 3 151535330 151535330 G A AADAC Silent p.R105R 0.19 TCGA-FS-A1ZA-06 3 153840274 153840274 T C ARHGEF26 Silent p.L165L 0.64 TCGA-FS-A1ZA-06 3 155203356 155203356 C T PLCH1 Silent p.R929R 0.41 TCGA-FS-A1ZA-06 3 157213110 157213110 C T VEPH1 Missense_Mutation p.G10E 0.45 tolerated(0.09) possibly_damaging(0.678) TCGA-FS-A1ZA-06 3 164735377 164735377 G A SI Missense_Mutation p.R1240W 0.15 tolerated(0.14) possibly_damaging(0.773) TCGA-FS-A1ZA-06 3 164776753 164776753 C T SI Missense_Mutation p.E466K 0.50 tolerated(0.52) benign(0.012) TCGA-FS-A1ZA-06 3 167247019 167247019 T C WDR49 Missense_Mutation p.N391D 0.57 tolerated(0.12) benign(0.01) TCGA-FS-A1ZA-06 3 167414821 167414821 G A PDCD10 Missense_Mutation p.R82C 0.13 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZA-06 3 168807957 168807957 C T MECOM Missense_Mutation p.D955N 0.17 tolerated(0.16) possibly_damaging(0.624) TCGA-FS-A1ZA-06 3 168834378 168834378 C T MECOM Missense_Mutation p.E305K 0.10 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 3 169099133 169099133 C T MECOM Missense_Mutation p.D97N 0.51 deleterious(0.02) benign(0.365) TCGA-FS-A1ZA-06 3 17053297 17053297 A G PLCL2 Missense_Mutation p.N694S 0.21 tolerated(0.21) possibly_damaging(0.817) TCGA-FS-A1ZA-06 3 170716012 170716012 G A SLC2A2 Silent p.F448F 0.56 TCGA-FS-A1ZA-06 3 172224273 172224273 C T TNFSF10 3'UTR 0.22 TCGA-FS-A1ZA-06 3 172224374 172224374 C T TNFSF10 Missense_Mutation p.E252K 0.14 tolerated(0.27) benign(0.042) TCGA-FS-A1ZA-06 3 172642095 172642095 G A SPATA16 Missense_Mutation p.P414L 0.53 deleterious(0.05) possibly_damaging(0.851) TCGA-FS-A1ZA-06 3 182635923 182635923 C T ATP11B 3'UTR 0.24 TCGA-FS-A1ZA-06 3 183639081 183639081 G A ABCC5 3'UTR 0.18 TCGA-FS-A1ZA-06 3 184102353 184102353 C T CHRD Missense_Mutation p.A490V 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 3 184105719 184105719 G A CHRD Missense_Mutation p.G818R 0.18 tolerated(0.23) benign(0.202) TCGA-FS-A1ZA-06 3 185190809 185190809 C T MAP3K13 Missense_Mutation p.P564S 0.24 tolerated(0.42) benign(0.043) TCGA-FS-A1ZA-06 3 186302326 186302326 C T DNAJB11 Silent p.I320I 0.30 TCGA-FS-A1ZA-06 3 188426263 188426263 C T LPP Intron 0.19 TCGA-FS-A1ZA-06 3 189587144 189587144 G A TP63 Missense_Mutation p.M387I 0.53 tolerated(0.65) benign(0.011) TCGA-FS-A1ZA-06 3 194080247 194080247 G A LRRC15 Missense_Mutation p.T515I 0.18 tolerated(0.07) benign(0.039) TCGA-FS-A1ZA-06 3 194081019 194081019 G A LRRC15 Silent p.L258L 0.59 TCGA-FS-A1ZA-06 3 196050787 196050787 G A TM4SF19 Silent p.F177F 0.51 TCGA-FS-A1ZA-06 3 196304365 196304365 C T FBXO45 Silent p.S120S 0.58 TCGA-FS-A1ZA-06 3 196771564 196771564 T C DLG1 Missense_Mutation p.N904S 0.24 tolerated(0.6) benign(0.005) TCGA-FS-A1ZA-06 3 3131904 3131904 A C IL5RA Intron 0.26 TCGA-FS-A1ZA-06 3 33400823 33400823 C T FBXL2 Missense_Mutation p.L57F 0.43 tolerated(0.1) benign(0.35) TCGA-FS-A1ZA-06 3 36759600 36759600 G A DCLK3 Missense_Mutation p.P552S 0.11 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 3 36897004 36897004 G A TRANK1 Silent p.S1359S 0.13 TCGA-FS-A1ZA-06 3 369855 369855 C T CHL1 Missense_Mutation p.S68L 0.58 tolerated(0.13) benign(0.002) TCGA-FS-A1ZA-06 3 38646229 38646229 G A SCN5A Silent p.P503P 0.47 TCGA-FS-A1ZA-06 3 38646230 38646230 G C SCN5A Missense_Mutation p.P503R 0.47 tolerated(0.63) benign(0.394) TCGA-FS-A1ZA-06 3 39228619 39228619 C T XIRP1 Missense_Mutation p.G773E 0.58 tolerated(0.36) benign(0.013) TCGA-FS-A1ZA-06 3 42201778 42201778 C T TRAK1 Intron 0.47 TCGA-FS-A1ZA-06 3 42576497 42576497 C T VIPR1 Silent p.I347I 0.13 TCGA-FS-A1ZA-06 3 44881882 44881882 G A KIF15 Silent p.K1118K 0.63 TCGA-FS-A1ZA-06 3 45000901 45000901 G A ZDHHC3 Nonsense_Mutation p.R10* 0.09 TCGA-FS-A1ZA-06 3 47887312 47887312 C T DHX30 Silent p.I354I 0.18 TCGA-FS-A1ZA-06 3 48699999 48699999 G A CELSR3 Silent p.L23L 0.33 TCGA-FS-A1ZA-06 3 50293647 50293647 T A GNAI2 Missense_Mutation p.I163N 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 3 50293650 50293650 C T GNAI2 Missense_Mutation p.A164V 0.32 tolerated(0.18) benign(0.101) TCGA-FS-A1ZA-06 3 52831138 52831138 T G ITIH3 Missense_Mutation p.L135W 0.38 deleterious(0) possibly_damaging(0.719) TCGA-FS-A1ZA-06 3 53757981 53757981 G A CACNA1D Silent p.R705R 0.64 TCGA-FS-A1ZA-06 3 58622068 58622068 C T FAM3D Missense_Mutation p.V180I 0.48 tolerated(0.19) benign(0.365) TCGA-FS-A1ZA-06 3 62423808 62423808 C T CADPS Missense_Mutation p.E1250K 0.20 deleterious(0) benign(0.077) TCGA-FS-A1ZA-06 3 71804103 71804103 C T GPR27 Silent p.V301V 0.13 TCGA-FS-A1ZA-06 3 72891553 72891553 C T SHQ1 Missense_Mutation p.G70E 0.13 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZA-06 3 73433775 73433775 C T PDZRN3 Missense_Mutation p.E648K 0.49 tolerated(0.12) benign(0.14) TCGA-FS-A1ZA-06 3 7348259 7348259 C T GRM7 Missense_Mutation p.S318F 0.47 deleterious(0.04) possibly_damaging(0.776) TCGA-FS-A1ZA-06 3 85984998 85984998 G A CADM2 Missense_Mutation p.G254E 0.19 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZA-06 3 95374174 95374174 T A MTHFD2P1 RNA 0.19 TCGA-FS-A1ZA-06 3 96706639 96706639 C T EPHA6 Missense_Mutation p.R306C 0.53 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 4 100239275 100239275 G A ADH1B Missense_Mutation p.P63S 0.52 deleterious(0.04) benign(0.342) TCGA-FS-A1ZA-06 4 10117765 10117765 C T WDR1 Missense_Mutation p.G37E 0.54 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZA-06 4 106755689 106755689 C T GSTCD Silent p.F534F 0.19 TCGA-FS-A1ZA-06 4 114262932 114262932 G A ANK2 Missense_Mutation p.A1328T 0.48 probably_damaging(0.996) TCGA-FS-A1ZA-06 4 115544722 115544722 C T UGT8 Missense_Mutation p.S229F 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-FS-A1ZA-06 4 119256633 119256633 G A PRSS12 Missense_Mutation p.S272F 0.26 tolerated(0.63) benign(0.035) TCGA-FS-A1ZA-06 4 119659432 119659432 G A SEC24D Missense_Mutation p.P827L 0.22 deleterious(0.03) probably_damaging(0.966) TCGA-FS-A1ZA-06 4 120189539 120189539 C T USP53 Missense_Mutation p.R418W 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-FS-A1ZA-06 4 122835950 122835950 G A TRPC3 Silent p.I442I 0.54 TCGA-FS-A1ZA-06 4 126369722 126369722 A T FAT4 Silent p.P2517P 0.34 TCGA-FS-A1ZA-06 4 126370371 126370371 G A FAT4 Missense_Mutation p.E2734K 0.46 probably_damaging(0.994) TCGA-FS-A1ZA-06 4 126411517 126411517 A G FAT4 Missense_Mutation p.T4514A 0.24 probably_damaging(0.98) TCGA-FS-A1ZA-06 4 129873956 129873956 G A SCLT1 Nonsense_Mutation p.R396* 0.23 TCGA-FS-A1ZA-06 4 138451272 138451272 G A PCDH18 Silent p.I657I 0.49 TCGA-FS-A1ZA-06 4 151827463 151827463 A T LRBA Missense_Mutation p.Y530N 0.56 tolerated(0.12) possibly_damaging(0.855) TCGA-FS-A1ZA-06 4 152069194 152069194 C T SH3D19 Silent p.Q374Q 0.42 TCGA-FS-A1ZA-06 4 155509998 155509998 G A FGA Missense_Mutation p.S104L 0.23 tolerated(0.17) possibly_damaging(0.546) TCGA-FS-A1ZA-06 4 155720126 155720126 G A RBM46 Missense_Mutation p.R271K 0.65 tolerated(0.12) possibly_damaging(0.551) TCGA-FS-A1ZA-06 4 166385634 166385634 G A CPE Missense_Mutation p.E134K 0.52 deleterious(0.01) possibly_damaging(0.731) TCGA-FS-A1ZA-06 4 166964482 166964482 C T TLL1 Missense_Mutation p.P479S 0.51 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 4 166999163 166999163 C T TLL1 Missense_Mutation p.P808L 0.45 tolerated(0.07) benign(0.429) TCGA-FS-A1ZA-06 4 173269812 173269812 C T GALNTL6 Silent p.I175I 0.49 TCGA-FS-A1ZA-06 4 174449922 174449922 C T HAND2 Silent p.K173K 0.50 TCGA-FS-A1ZA-06 4 175598368 175598368 G A GLRA3 Missense_Mutation p.P263L 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 4 175898956 175898956 A G ADAM29 Silent p.Q760Q 0.46 TCGA-FS-A1ZA-06 4 176622878 176622878 G A GPM6A Silent p.P26P 0.32 TCGA-FS-A1ZA-06 4 177142748 177142748 T G ASB5 Missense_Mutation p.N130H 0.28 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 4 177608419 177608419 C T VEGFC Missense_Mutation p.G356E 0.40 tolerated(0.89) benign(0.015) TCGA-FS-A1ZA-06 4 177609040 177609040 C T VEGFC Nonsense_Mutation p.W249* 0.43 TCGA-FS-A1ZA-06 4 183714756 183714756 C T TENM3 Missense_Mutation p.L2311F 0.17 tolerated(0.55) benign(0.047) TCGA-FS-A1ZA-06 4 183714757 183714757 T A TENM3 Missense_Mutation p.L2311H 0.17 tolerated(0.47) benign(0.284) TCGA-FS-A1ZA-06 4 184233602 184233602 C T WWC2 Missense_Mutation p.R1165W 0.17 tolerated(0.05) possibly_damaging(0.487) TCGA-FS-A1ZA-06 4 185606756 185606756 C T PRIMPOL Missense_Mutation p.P405S 0.39 possibly_damaging(0.492) TCGA-FS-A1ZA-06 4 2648459 2648459 C T FAM193A Missense_Mutation p.T113I 0.78 deleterious(0.01) possibly_damaging(0.844) TCGA-FS-A1ZA-06 4 37962247 37962247 G A PTTG2 Silent p.L64L 0.33 TCGA-FS-A1ZA-06 4 38799722 38799722 G A TLR1 Missense_Mutation p.P244L 0.33 tolerated(0.15) benign(0.007) TCGA-FS-A1ZA-06 4 41678479 41678479 G A LIMCH1 Silent p.Q789Q 0.13 TCGA-FS-A1ZA-06 4 46994956 46994956 C T GABRA4 Missense_Mutation p.E32K 0.42 tolerated(0.87) benign(0.006) TCGA-FS-A1ZA-06 4 47886373 47886373 G A NFXL1 Missense_Mutation p.P636S 0.46 deleterious(0.03) probably_damaging(0.994) TCGA-FS-A1ZA-06 4 47951898 47951898 G T CNGA1 Missense_Mutation p.P153H 0.18 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-FS-A1ZA-06 4 48097181 48097181 G A TXK Missense_Mutation p.S187F 0.23 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZA-06 4 53740124 53740124 C T SCFD2 3'UTR 0.57 TCGA-FS-A1ZA-06 4 55144631 55144631 A T PDGFRA Missense_Mutation p.K702M 0.35 deleterious(0.04) probably_damaging(0.995) TCGA-FS-A1ZA-06 4 55955863 55955863 G A KDR Missense_Mutation p.S1100F 0.26 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 4 56236365 56236365 C T SRD5A3 3'UTR 0.25 TCGA-FS-A1ZA-06 4 62903448 62903448 G A LPHN3 Splice_Site p.X1130_splice 0.47 TCGA-FS-A1ZA-06 4 69403596 69403596 G A UGT2B17 Missense_Mutation p.S447L 0.76 deleterious(0) possibly_damaging(0.908) TCGA-FS-A1ZA-06 4 71509927 71509927 C T ENAM Silent p.I928I 0.20 TCGA-FS-A1ZA-06 4 72629572 72629572 C T GC Missense_Mutation p.M204I 0.43 tolerated(0.11) benign(0.066) TCGA-FS-A1ZA-06 4 75250501 75250501 G A EREG Silent p.G162G 0.32 TCGA-FS-A1ZA-06 4 75937638 75937638 G A PARM1 Nonsense_Mutation p.W16* 0.49 TCGA-FS-A1ZA-06 4 75938326 75938326 G A PARM1 Silent p.V245V 0.45 TCGA-FS-A1ZA-06 4 79400700 79400700 T C FRAS1 Silent p.L2757L 0.29 TCGA-FS-A1ZA-06 4 81884785 81884785 C T C4orf22 3'Flank 0.67 TCGA-FS-A1ZA-06 4 83719481 83719481 G T SCD5 Silent p.A70A 0.53 TCGA-FS-A1ZA-06 4 8589044 8589044 G A GPR78 Missense_Mutation p.G349D 0.58 tolerated_low_confidence(0.44) benign(0) TCGA-FS-A1ZA-06 4 88036097 88036097 C T AFF1 Silent p.T704T 0.15 TCGA-FS-A1ZA-06 4 88766960 88766960 G A MEPE Missense_Mutation p.G314R 0.24 tolerated(0.41) benign(0.008) TCGA-FS-A1ZA-06 4 941545 941545 C T TMEM175 Silent p.T6T 0.73 TCGA-FS-A1ZA-06 4 96762199 96762199 C T PDHA2 Missense_Mutation p.R300C 0.25 deleterious(0.02) possibly_damaging(0.538) TCGA-FS-A1ZA-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.69 TCGA-FS-A1ZA-06 5 101816074 101816074 G A SLCO6A1 Silent p.T141T 0.42 TCGA-FS-A1ZA-06 5 101834509 101834509 C T SLCO6A1 Missense_Mutation p.E14K 0.45 tolerated(0.42) benign(0.025) TCGA-FS-A1ZA-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.37 TCGA-FS-A1ZA-06 5 112175106 112175106 C T APC Missense_Mutation p.S1272L 0.43 probably_damaging(0.999) TCGA-FS-A1ZA-06 5 115320281 115320281 G A AQPEP Missense_Mutation p.E285K 0.43 tolerated(0.63) benign(0.04) TCGA-FS-A1ZA-06 5 115335491 115335491 T A AQPEP Missense_Mutation p.N469K 0.46 tolerated(0.41) benign(0.065) TCGA-FS-A1ZA-06 5 115348125 115348125 C T AQPEP Missense_Mutation p.R768C 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-FS-A1ZA-06 5 115469813 115469813 C T COMMD10 Nonsense_Mutation p.Q150* 0.31 TCGA-FS-A1ZA-06 5 115782558 115782558 G A SEMA6A Silent p.S948S 0.45 TCGA-FS-A1ZA-06 5 115782984 115782984 C T SEMA6A Silent p.R806R 0.38 TCGA-FS-A1ZA-06 5 118970427 118970427 G A FAM170A Silent p.R328R 0.25 TCGA-FS-A1ZA-06 5 127474309 127474309 T G SLC12A2 Missense_Mutation p.F477V 0.27 deleterious(0.03) benign(0.285) TCGA-FS-A1ZA-06 5 127474346 127474346 C T SLC12A2 Missense_Mutation p.S489F 0.28 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZA-06 5 127714575 127714575 C T FBN2 Missense_Mutation p.E538K 0.40 deleterious(0) probably_damaging(0.965) TCGA-FS-A1ZA-06 5 128862105 128862105 G A ADAMTS19 Missense_Mutation p.G342R 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 5 130840383 130840383 A G RAPGEF6 Missense_Mutation p.V397A 0.43 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZA-06 5 131290047 131290047 G A ACSL6 Silent p.I683I 0.37 TCGA-FS-A1ZA-06 5 134028336 134028336 G A SEC24A Missense_Mutation p.E590K 0.34 tolerated(0.12) possibly_damaging(0.775) TCGA-FS-A1ZA-06 5 135382121 135382121 G A TGFBI Missense_Mutation p.M132I 0.44 tolerated(1) benign(0.007) TCGA-FS-A1ZA-06 5 13717526 13717526 G A DNAH5 Silent p.F4201F 0.32 TCGA-FS-A1ZA-06 5 13829721 13829721 G A DNAH5 Silent p.I2114I 0.36 TCGA-FS-A1ZA-06 5 13830773 13830773 C T DNAH5 Silent p.G1998G 0.44 TCGA-FS-A1ZA-06 5 13841876 13841876 C T DNAH5 Silent p.V1803V 0.46 TCGA-FS-A1ZA-06 5 138723364 138723364 G A MZB1 3'UTR 0.58 TCGA-FS-A1ZA-06 5 138723365 138723365 G A MZB1 3'UTR 0.58 TCGA-FS-A1ZA-06 5 13876829 13876829 A T DNAH5 Silent p.V1120V 0.27 TCGA-FS-A1ZA-06 5 139742641 139742641 C T SLC4A9 Nonsense_Mutation p.Q342* 0.48 TCGA-FS-A1ZA-06 5 140167364 140167364 C T PCDHA1 Missense_Mutation p.R497W 0.38 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-FS-A1ZA-06 5 140250211 140250211 C T PCDHA11 Missense_Mutation p.S508L 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.9) TCGA-FS-A1ZA-06 5 140255069 140255069 C T PCDHA12 Silent p.I4I 0.33 TCGA-FS-A1ZA-06 5 140262784 140262784 G A PCDHA13 Missense_Mutation p.E311K 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 5 140475556 140475556 C T PCDHB2 Silent p.F394F 0.36 TCGA-FS-A1ZA-06 5 140476765 140476765 C T PCDHB2 Silent p.F797F 0.36 TCGA-FS-A1ZA-06 5 140480851 140480851 G A PCDHB3 Silent p.P206P 0.51 TCGA-FS-A1ZA-06 5 140482344 140482344 C T PCDHB3 Missense_Mutation p.S704L 0.46 deleterious_low_confidence(0) benign(0.209) TCGA-FS-A1ZA-06 5 140501662 140501662 G A PCDHB4 Missense_Mutation p.E28K 0.32 deleterious_low_confidence(0.03) benign(0.135) TCGA-FS-A1ZA-06 5 140559406 140559406 G A PCDHB8 Silent p.S597S 0.19 TCGA-FS-A1ZA-06 5 140574378 140574378 C T PCDHB10 Silent p.Y751Y 0.37 TCGA-FS-A1ZA-06 5 140594389 140594389 G A PCDHB13 Missense_Mutation p.E232K 0.15 tolerated_low_confidence(0.62) benign(0.003) TCGA-FS-A1ZA-06 5 140605391 140605391 C T PCDHB14 Missense_Mutation p.P772S 0.28 tolerated_low_confidence(0.08) benign(0.035) TCGA-FS-A1ZA-06 5 140712561 140712561 C T PCDHGA1 Silent p.F770F 0.32 TCGA-FS-A1ZA-06 5 140725564 140725564 C T PCDHGA3 Missense_Mutation p.S655F 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 5 140736123 140736123 C T PCDHGA4 Silent p.F452F 0.33 TCGA-FS-A1ZA-06 5 140736706 140736706 C T PCDHGA4 Nonsense_Mutation p.Q647* 0.35 TCGA-FS-A1ZA-06 5 140736894 140736894 G A PCDHGA4 Silent p.T709T 0.38 TCGA-FS-A1ZA-06 5 140774190 140774190 C T PCDHGA8 Silent p.L604L 0.50 TCGA-FS-A1ZA-06 5 140794271 140794271 C T PCDHGA10 Missense_Mutation p.S510F 0.36 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-FS-A1ZA-06 5 140798322 140798322 G A PCDHGB7 Missense_Mutation p.G299E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 5 142689733 142689733 T G NR3C1 Missense_Mutation p.D467A 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 5 14462919 14462919 G A TRIO Missense_Mutation p.G1851E 0.50 benign(0.012) TCGA-FS-A1ZA-06 5 147820005 147820005 A T FBXO38 Missense_Mutation p.E988D 0.29 tolerated(0.06) probably_damaging(0.99) TCGA-FS-A1ZA-06 5 148407132 148407132 G A SH3TC2 Silent p.L721L 0.46 TCGA-FS-A1ZA-06 5 148753994 148753994 C T IL17B Missense_Mutation p.G161R 0.50 tolerated(0.1) benign(0.367) TCGA-FS-A1ZA-06 5 149001489 149001489 C T ARHGEF37 Missense_Mutation p.S400L 0.29 deleterious(0) possibly_damaging(0.612) TCGA-FS-A1ZA-06 5 1494891 1494891 G A LPCAT1 Silent p.F139F 0.25 TCGA-FS-A1ZA-06 5 150078149 150078149 G A RBM22 Silent p.V61V 0.37 TCGA-FS-A1ZA-06 5 150581166 150581166 C T CCDC69 Missense_Mutation p.E70K 0.35 deleterious(0.04) benign(0.423) TCGA-FS-A1ZA-06 5 154181779 154181779 C T LARP1 Silent p.I566I 0.37 TCGA-FS-A1ZA-06 5 154185574 154185574 C T LARP1 Missense_Mutation p.R817C 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 5 154395651 154395651 G A KIF4B Silent p.R744R 0.46 TCGA-FS-A1ZA-06 5 158223377 158223377 G A EBF1 Silent p.F295F 0.61 TCGA-FS-A1ZA-06 5 160039886 160039886 C T ATP10B Silent p.T900T 0.41 TCGA-FS-A1ZA-06 5 161300146 161300146 C A GABRA1 Missense_Mutation p.F93L 0.33 deleterious(0.03) benign(0.01) TCGA-FS-A1ZA-06 5 161300147 161300147 C T GABRA1 Missense_Mutation p.R94C 0.35 deleterious(0) possibly_damaging(0.871) TCGA-FS-A1ZA-06 5 16668463 16668463 G A MYO10 Missense_Mutation p.L2000F 0.32 deleterious(0) possibly_damaging(0.621) TCGA-FS-A1ZA-06 5 167625870 167625870 C T TENM2 Silent p.I971I 0.34 TCGA-FS-A1ZA-06 5 171480 171480 G A PLEKHG4B Missense_Mutation p.R968Q 0.30 tolerated(0.17) benign(0.277) TCGA-FS-A1ZA-06 5 176004676 176004676 C T CDHR2 Silent p.V463V 0.47 TCGA-FS-A1ZA-06 5 177651689 177651689 G A PHYKPL Missense_Mutation p.P152L 0.22 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 5 178489061 178489061 G A ZNF354C 5'UTR 0.25 TCGA-FS-A1ZA-06 5 178559292 178559292 C T ADAMTS2 Silent p.E743E 0.45 TCGA-FS-A1ZA-06 5 180050979 180050979 C T FLT4 Missense_Mutation p.E502K 0.31 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZA-06 5 180582422 180582422 G A OR2V2 Silent p.Q160Q 0.28 TCGA-FS-A1ZA-06 5 21854788 21854788 G A CDH12 Missense_Mutation p.P213L 0.23 deleterious(0) possibly_damaging(0.692) TCGA-FS-A1ZA-06 5 21854789 21854789 G A CDH12 Missense_Mutation p.P213S 0.22 tolerated(0.2) benign(0.286) TCGA-FS-A1ZA-06 5 31323492 31323492 C T CDH6 3'UTR 0.43 TCGA-FS-A1ZA-06 5 32074232 32074232 C T PDZD2 Missense_Mutation p.S1007F 0.26 deleterious(0) benign(0.072) TCGA-FS-A1ZA-06 5 32087839 32087851 AGCTTCATCAAGG - PDZD2 Frame_Shift_Del p.F1430Wfs*71 0.39 TCGA-FS-A1ZA-06 5 32385739 32385739 T A ZFR Missense_Mutation p.K839M 0.24 deleterious(0) unknown(0) TCGA-FS-A1ZA-06 5 33576430 33576430 G A ADAMTS12 Missense_Mutation p.P1234L 0.40 tolerated(0.2) benign(0.016) TCGA-FS-A1ZA-06 5 34811966 34811966 G A RAI14 Missense_Mutation p.G221R 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 5 34811967 34811967 G A RAI14 Missense_Mutation p.G221E 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 5 35070311 35070311 C T PRLR Silent p.Q200Q 0.38 TCGA-FS-A1ZA-06 5 35857161 35857161 G A IL7R Missense_Mutation p.G28R 0.39 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 5 35910511 35910511 C T CAPSL Missense_Mutation p.G91E 0.32 tolerated(0.05) benign(0.096) TCGA-FS-A1ZA-06 5 35955941 35955941 G A UGT3A1 Silent p.V367V 0.41 TCGA-FS-A1ZA-06 5 3599741 3599741 A T IRX1 Missense_Mutation p.S227C 0.49 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZA-06 5 3599742 3599742 G A IRX1 Missense_Mutation p.S227N 0.49 tolerated(0.34) possibly_damaging(0.827) TCGA-FS-A1ZA-06 5 40945390 40945390 C T C7 Missense_Mutation p.R220W 0.46 deleterious(0.02) benign(0.258) TCGA-FS-A1ZA-06 5 40958352 40958352 G A C7 Missense_Mutation p.G493E 0.46 tolerated(0.62) benign(0.029) TCGA-FS-A1ZA-06 5 40959617 40959617 G A C7 Missense_Mutation p.R519K 0.31 deleterious(0) probably_damaging(0.951) TCGA-FS-A1ZA-06 5 41058251 41058251 C T MROH2B Missense_Mutation p.E224K 0.32 deleterious(0.01) benign(0.162) TCGA-FS-A1ZA-06 5 41142959 41142959 C T C6 Missense_Mutation p.E925K 0.35 deleterious(0.03) benign(0.248) TCGA-FS-A1ZA-06 5 41313622 41313622 G A PLCXD3 3'UTR 0.50 TCGA-FS-A1ZA-06 5 52386420 52386420 C A ITGA2 Silent p.L1179L 0.29 TCGA-FS-A1ZA-06 5 5239950 5239950 C T ADAMTS16 Missense_Mutation p.S812L 0.43 deleterious(0) benign(0.426) TCGA-FS-A1ZA-06 5 54639156 54639156 C T SKIV2L2 Intron 0.24 TCGA-FS-A1ZA-06 5 57790482 57790482 G A GAPT Missense_Mutation p.R40Q 0.38 tolerated(0.53) benign(0.081) TCGA-FS-A1ZA-06 5 666235 666235 C T TPPP Silent p.G105G 0.31 TCGA-FS-A1ZA-06 5 68660828 68660828 C T TAF9 Missense_Mutation p.R246K 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-FS-A1ZA-06 5 71756150 71756150 G A ZNF366 Nonsense_Mutation p.Q392* 0.28 TCGA-FS-A1ZA-06 5 79616920 79616920 G A SPZ1 Missense_Mutation p.E296K 0.37 tolerated(0.44) benign(0.007) TCGA-FS-A1ZA-06 5 889228 889228 C T BRD9 Missense_Mutation p.G172R 0.38 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 5 93859772 93859772 C T KIAA0825 Missense_Mutation p.E55K 0.21 tolerated(0.28) benign(0.115) TCGA-FS-A1ZA-06 5 95728851 95728851 T A PCSK1 Nonsense_Mutation p.K706* 0.31 TCGA-FS-A1ZA-06 5 95735873 95735873 C T PCSK1 Missense_Mutation p.R405Q 0.46 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 5 96503501 96503501 C T RIOK2 Missense_Mutation p.R356Q 0.32 tolerated(0.72) benign(0.001) TCGA-FS-A1ZA-06 6 10874455 10874455 G A GCM2 Missense_Mutation p.P432S 0.29 deleterious_low_confidence(0.03) benign(0.446) TCGA-FS-A1ZA-06 6 116442510 116442510 C T COL10A1 Missense_Mutation p.E257K 0.57 tolerated(0.83) unknown(0) TCGA-FS-A1ZA-06 6 117700253 117700253 G A ROS1 Missense_Mutation p.H856Y 0.59 deleterious(0.04) possibly_damaging(0.548) TCGA-FS-A1ZA-06 6 128135035 128135035 C T THEMIS Missense_Mutation p.E251K 0.75 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 6 129712665 129712665 G A LAMA2 Missense_Mutation p.E1701K 0.55 tolerated(0.12) benign(0.032) TCGA-FS-A1ZA-06 6 130152523 130152523 C T TMEM244 Missense_Mutation p.E110K 0.67 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZA-06 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.52 TCGA-FS-A1ZA-06 6 133802709 133802709 C T EYA4 Missense_Mutation p.P360L 0.69 deleterious(0.03) benign(0.034) TCGA-FS-A1ZA-06 6 136494966 136494966 G A PDE7B Missense_Mutation p.R248Q 0.47 deleterious(0) possibly_damaging(0.848) TCGA-FS-A1ZA-06 6 136904796 136904796 C T MAP3K5 Missense_Mutation p.R1103Q 0.44 tolerated(0.19) probably_damaging(0.995) TCGA-FS-A1ZA-06 6 146480714 146480714 G A GRM1 Missense_Mutation p.E311K 0.59 tolerated(0.12) benign(0.037) TCGA-FS-A1ZA-06 6 150263263 150263263 C T ULBP2 Silent p.L19L 0.64 TCGA-FS-A1ZA-06 6 152763287 152763287 G A SYNE1 Missense_Mutation p.H1311Y 0.62 benign(0.044) TCGA-FS-A1ZA-06 6 15496885 15496885 G A JARID2 Missense_Mutation p.E477K 0.22 tolerated_low_confidence(0.25) benign(0.009) TCGA-FS-A1ZA-06 6 15651588 15651588 A C DTNBP1 Silent p.V39V 0.22 TCGA-FS-A1ZA-06 6 15651589 15651589 A C DTNBP1 Missense_Mutation p.V39G 0.21 deleterious(0.03) benign(0.202) TCGA-FS-A1ZA-06 6 159457649 159457649 G A TAGAP Missense_Mutation p.S469F 0.64 tolerated(0.45) possibly_damaging(0.892) TCGA-FS-A1ZA-06 6 161123346 161123346 A G PLG Missense_Mutation p.K4E 0.49 tolerated(0.53) benign(0.15) TCGA-FS-A1ZA-06 6 161135945 161135945 A T PLG Nonsense_Mutation p.K223* 0.47 TCGA-FS-A1ZA-06 6 167754880 167754880 C T TTLL2 Missense_Mutation p.H498Y 0.67 tolerated(0.07) benign(0.015) TCGA-FS-A1ZA-06 6 24848352 24848352 G A FAM65B Silent p.S326S 0.38 TCGA-FS-A1ZA-06 6 2785494 2785494 T A WRNIP1 Missense_Mutation p.F659Y 0.37 deleterious(0.04) possibly_damaging(0.679) TCGA-FS-A1ZA-06 6 2785495 2785495 C G WRNIP1 Missense_Mutation p.F659L 0.36 deleterious(0.02) possibly_damaging(0.679) TCGA-FS-A1ZA-06 6 27861614 27861614 C T HIST1H2BO Missense_Mutation p.S125F 0.25 deleterious_low_confidence(0) benign(0.062) TCGA-FS-A1ZA-06 6 28540229 28540229 C T SCAND3 Missense_Mutation p.R1146K 0.26 tolerated_low_confidence(0.11) probably_damaging(0.931) TCGA-FS-A1ZA-06 6 29054298 29054298 G A OR2B3 Missense_Mutation p.S243F 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 6 29408399 29408399 G A OR10C1 Missense_Mutation p.A203T 0.24 tolerated(0.09) possibly_damaging(0.894) TCGA-FS-A1ZA-06 6 29556430 29556430 G A OR2H2 Missense_Mutation p.G237R 0.25 tolerated(0.1) benign(0.29) TCGA-FS-A1ZA-06 6 29797630 29797630 C T HLA-G Silent p.I311I 0.26 TCGA-FS-A1ZA-06 6 31600013 31600013 C T PRRC2A Missense_Mutation p.P1188L 0.21 unknown(0) TCGA-FS-A1ZA-06 6 31726896 31726896 C T MSH5 Missense_Mutation p.P450L 0.26 deleterious(0) probably_damaging(0.972) TCGA-FS-A1ZA-06 6 31901498 31901498 G A CFB Missense_Mutation p.G123E 0.22 deleterious(0) benign(0.116) TCGA-FS-A1ZA-06 6 31940127 31940127 C T STK19 Missense_Mutation p.P90L 0.26 tolerated_low_confidence(1) benign(0.007) TCGA-FS-A1ZA-06 6 32085144 32085144 G A ATF6B Nonsense_Mutation p.Q524* 0.23 TCGA-FS-A1ZA-06 6 32096838 32096838 G A FKBPL Silent p.L240L 0.24 TCGA-FS-A1ZA-06 6 32714034 32714034 C T HLA-DQA2 Missense_Mutation p.P211S 0.22 tolerated(0.07) possibly_damaging(0.45) TCGA-FS-A1ZA-06 6 32905121 32905121 C T HLA-DMB Silent p.R150R 0.29 TCGA-FS-A1ZA-06 6 33143840 33143840 C T COL11A2 Missense_Mutation p.D655N 0.27 possibly_damaging(0.728) TCGA-FS-A1ZA-06 6 33281529 33281529 T G TAPBP Silent p.G50G 0.19 TCGA-FS-A1ZA-06 6 33656078 33656078 C T ITPR3 Silent p.F2146F 0.26 TCGA-FS-A1ZA-06 6 34008342 34008342 C T GRM4 Missense_Mutation p.R451Q 0.67 tolerated(0.17) probably_damaging(0.999) TCGA-FS-A1ZA-06 6 34825582 34825582 T C UHRF1BP1 Missense_Mutation p.F552S 0.55 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 6 35259508 35259508 C T ZNF76 Missense_Mutation p.H309Y 0.37 deleterious(0) probably_damaging(0.917) TCGA-FS-A1ZA-06 6 35764997 35764997 C T CLPS Silent p.G23G 0.12 TCGA-FS-A1ZA-06 6 36275387 36275387 A T PNPLA1 Missense_Mutation p.N498I 0.27 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-FS-A1ZA-06 6 36762403 36762403 G A CPNE5 Missense_Mutation p.S143F 0.32 tolerated(0.16) benign(0.015) TCGA-FS-A1ZA-06 6 36979529 36979529 C T FGD2 Silent p.F142F 0.26 TCGA-FS-A1ZA-06 6 38718300 38718300 A G DNAH8 Missense_Mutation p.K231E 0.27 probably_damaging(1) TCGA-FS-A1ZA-06 6 38893862 38893862 G A DNAH8 Missense_Mutation p.G3448E 0.52 possibly_damaging(0.881) TCGA-FS-A1ZA-06 6 41002446 41002446 G A UNC5CL Missense_Mutation p.S123F 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 6 42689950 42689950 C T PRPH2 Silent p.L41L 0.33 TCGA-FS-A1ZA-06 6 42828037 42828037 A G GLTSCR1L Silent p.L764L 0.24 TCGA-FS-A1ZA-06 6 43223526 43223526 C T TTBK1 Missense_Mutation p.P265S 0.33 probably_damaging(1) TCGA-FS-A1ZA-06 6 43412002 43412002 C T ABCC10 Missense_Mutation p.A867V 0.33 tolerated(0.15) benign(0.341) TCGA-FS-A1ZA-06 6 46216487 46216487 C T RCAN2 Silent p.G124G 0.11 TCGA-FS-A1ZA-06 6 46828529 46828529 C T GPR116 Missense_Mutation p.G768R 0.35 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZA-06 6 4954232 4954232 C T CDYL Missense_Mutation p.S526L 0.44 deleterious(0) possibly_damaging(0.889) TCGA-FS-A1ZA-06 6 49660530 49660530 C T CRISP2 Missense_Mutation p.E230K 0.49 tolerated(0.4) benign(0.05) TCGA-FS-A1ZA-06 6 49754169 49754169 G A PGK2 Silent p.F244F 0.43 TCGA-FS-A1ZA-06 6 49803096 49803096 C T CRISP1 Missense_Mutation p.G228E 0.36 deleterious(0.03) possibly_damaging(0.736) TCGA-FS-A1ZA-06 6 52054140 52054140 G A IL17A 3'UTR 0.44 TCGA-FS-A1ZA-06 6 54804969 54804969 C T FAM83B Silent p.L400L 0.34 TCGA-FS-A1ZA-06 6 54805524 54805524 G A FAM83B Silent p.T585T 0.56 TCGA-FS-A1ZA-06 6 54806470 54806470 G A FAM83B Missense_Mutation p.E901K 0.46 tolerated(0.17) benign(0.309) TCGA-FS-A1ZA-06 6 55216050 55216050 G A GFRAL Splice_Site p.X124_splice 0.35 TCGA-FS-A1ZA-06 6 55304296 55304296 C - HMGCLL1 Frame_Shift_Del p.G316Vfs*6 0.15 TCGA-FS-A1ZA-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.33 tolerated(0.45) benign(0.018) TCGA-FS-A1ZA-06 6 55739275 55739275 G A BMP5 Missense_Mutation p.S130F 0.42 tolerated(0.39) benign(0.341) TCGA-FS-A1ZA-06 6 62757843 62757843 C T KHDRBS2 Silent p.Q92Q 0.47 TCGA-FS-A1ZA-06 6 63989956 63989956 C T LGSN Silent p.E500E 0.37 TCGA-FS-A1ZA-06 6 66112428 66112428 G A EYS Missense_Mutation p.S376L 0.60 tolerated(0.21) benign(0.012) TCGA-FS-A1ZA-06 6 69348921 69348921 C T BAI3 Silent p.F118F 0.46 TCGA-FS-A1ZA-06 6 70092801 70092801 C T BAI3 Missense_Mutation p.R1452W 0.48 deleterious(0.03) probably_damaging(0.983) TCGA-FS-A1ZA-06 6 70890237 70890237 C T COL19A1 Missense_Mutation p.P901S 0.36 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZA-06 6 74117749 74117749 C T DDX43 Silent p.I368I 0.40 TCGA-FS-A1ZA-06 6 7584736 7584736 G A DSP Missense_Mutation p.G2414E 0.27 probably_damaging(1) TCGA-FS-A1ZA-06 6 79650681 79650681 G A PHIP Missense_Mutation p.P1732L 0.39 deleterious_low_confidence(0) benign(0.275) TCGA-FS-A1ZA-06 6 79650682 79650682 G A PHIP Missense_Mutation p.P1732S 0.39 tolerated_low_confidence(0.32) benign(0.027) TCGA-FS-A1ZA-06 6 79708059 79708060 - A PHIP Frame_Shift_Ins p.D644Gfs*18 0.22 TCGA-FS-A1ZA-06 6 83872626 83872626 G A DOPEY1 Silent p.R2360R 0.47 TCGA-FS-A1ZA-06 6 93982080 93982080 G A EPHA7 Missense_Mutation p.S462F 0.35 tolerated(0.07) probably_damaging(0.96) TCGA-FS-A1ZA-06 6 94120739 94120739 G A EPHA7 Silent p.F104F 0.43 TCGA-FS-A1ZA-06 7 100550183 100550183 C T MUC3A Missense_Mutation p.S255F 0.22 tolerated(0.08) unknown(0) TCGA-FS-A1ZA-06 7 100551602 100551602 C T MUC3A Missense_Mutation p.S118F 0.34 tolerated(0.06) possibly_damaging(0.831) TCGA-FS-A1ZA-06 7 107432355 107432355 G A SLC26A3 Missense_Mutation p.P101L 0.36 deleterious(0.01) possibly_damaging(0.864) TCGA-FS-A1ZA-06 7 107600255 107600255 G A LAMB1 Missense_Mutation p.S780L 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZA-06 7 107688550 107688550 C T LAMB4 Missense_Mutation p.G1377R 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-FS-A1ZA-06 7 11445927 11445927 C T THSD7A Missense_Mutation p.G1413S 0.45 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZA-06 7 126542643 126542643 T C GRM8 Missense_Mutation p.K370R 0.50 tolerated(0.34) benign(0.018) TCGA-FS-A1ZA-06 7 137092653 137092653 T G DGKI Missense_Mutation p.N971T 0.41 tolerated(0.08) possibly_damaging(0.676) TCGA-FS-A1ZA-06 7 138555992 138555992 G A KIAA1549 Missense_Mutation p.L1488F 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 7 139657436 139657436 C T TBXAS1 Missense_Mutation p.S278L 0.42 tolerated(1) benign(0.3) TCGA-FS-A1ZA-06 7 141479077 141479077 C T TAS2R4 Silent p.S263S 0.41 TCGA-FS-A1ZA-06 7 141490926 141490926 C T TAS2R5 Silent p.F255F 0.36 TCGA-FS-A1ZA-06 7 141540847 141540847 C T PRSS37 Translation_Start_Site p.M1? 0.40 deleterious(0) benign(0.365) TCGA-FS-A1ZA-06 7 141619534 141619534 C T OR9A4 Missense_Mutation p.P287S 0.26 deleterious(0) possibly_damaging(0.883) TCGA-FS-A1ZA-06 7 141754686 141754686 C T MGAM Missense_Mutation p.R1098W 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 7 141796187 141796187 C T MGAM Missense_Mutation p.A1659V 0.23 deleterious(0.01) possibly_damaging(0.896) TCGA-FS-A1ZA-06 7 142028341 142028341 G A TRBV6-1 Silent p.Q25Q 0.28 TCGA-FS-A1ZA-06 7 142032490 142032490 G A TRBV7-1 Missense_Mutation p.G104R 0.31 tolerated(0.42) benign(0.05) TCGA-FS-A1ZA-06 7 142223960 142223960 C T TRBV11-1 Silent p.Q69Q 0.35 TCGA-FS-A1ZA-06 7 142457350 142457350 G A PRSS1 Silent p.L5L 0.36 TCGA-FS-A1ZA-06 7 142481283 142481283 C T PRSS3P2 RNA 0.52 TCGA-FS-A1ZA-06 7 142570162 142570162 C T TRPV6 Missense_Mutation p.G620R 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 7 143080384 143080384 C T ZYX Missense_Mutation p.P331L 0.38 deleterious(0.02) possibly_damaging(0.758) TCGA-FS-A1ZA-06 7 143080385 143080385 C T ZYX Silent p.P331P 0.35 TCGA-FS-A1ZA-06 7 143632352 143632352 G A OR2F2 Silent p.V9V 0.29 TCGA-FS-A1ZA-06 7 149498854 149498854 C T SSPO RNA 0.53 TCGA-FS-A1ZA-06 7 150389469 150389469 G A GIMAP2 Missense_Mutation p.G32E 0.33 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 7 151261232 151261232 C T PRKAG2 Missense_Mutation p.E506K 0.41 deleterious(0) possibly_damaging(0.875) TCGA-FS-A1ZA-06 7 151877015 151877015 G A KMT2C Missense_Mutation p.P2449L 0.43 probably_damaging(0.986) TCGA-FS-A1ZA-06 7 154876258 154876258 C T HTR5A 3'UTR 0.30 TCGA-FS-A1ZA-06 7 155596253 155596253 G A SHH Missense_Mutation p.R244C 0.50 deleterious(0) possibly_damaging(0.894) TCGA-FS-A1ZA-06 7 18705844 18705844 G A HDAC9 Silent p.S492S 0.27 TCGA-FS-A1ZA-06 7 18705940 18705940 C T HDAC9 Silent p.P524P 0.31 TCGA-FS-A1ZA-06 7 18767295 18767295 C T HDAC9 Silent p.L608L 0.33 TCGA-FS-A1ZA-06 7 18875168 18875168 G A HDAC9 Missense_Mutation p.D849N 0.39 deleterious(0) possibly_damaging(0.88) TCGA-FS-A1ZA-06 7 20431110 20431110 C T ITGB8 Missense_Mutation p.H349Y 0.31 tolerated(0.18) benign(0.003) TCGA-FS-A1ZA-06 7 21906166 21906166 G A DNAH11 Missense_Mutation p.E3866K 0.32 possibly_damaging(0.883) TCGA-FS-A1ZA-06 7 21908507 21908507 C T DNAH11 Silent p.D3962D 0.35 TCGA-FS-A1ZA-06 7 22985211 22985211 A T FAM126A Missense_Mutation p.D521E 0.52 tolerated_low_confidence(0.11) benign(0.035) TCGA-FS-A1ZA-06 7 27880369 27880369 C T JAZF1 Missense_Mutation p.G168E 0.39 deleterious(0.03) possibly_damaging(0.461) TCGA-FS-A1ZA-06 7 34118752 34118752 C T BMPER Silent p.F454F 0.31 TCGA-FS-A1ZA-06 7 35712846 35712846 G A HERPUD2 Missense_Mutation p.P64S 0.49 tolerated(0.27) benign(0.069) TCGA-FS-A1ZA-06 7 38797964 38797964 G A VPS41 Silent p.L514L 0.44 TCGA-FS-A1ZA-06 7 4014170 4014170 G A SDK1 Missense_Mutation p.E663K 0.25 tolerated(0.2) possibly_damaging(0.593) TCGA-FS-A1ZA-06 7 43447259 43447259 C T HECW1 Missense_Mutation p.L244F 0.42 tolerated(0.4) probably_damaging(1) TCGA-FS-A1ZA-06 7 44104771 44104771 C T PGAM2 Missense_Mutation p.D120N 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A1ZA-06 7 44869644 44869644 G A H2AFV 3'Flank 0.17 TCGA-FS-A1ZA-06 7 45015128 45015128 C T MYO1G Silent p.K173K 0.37 TCGA-FS-A1ZA-06 7 45932699 45932699 G A IGFBP1 3'UTR 0.20 TCGA-FS-A1ZA-06 7 50530967 50530967 C T DDC Missense_Mutation p.E469K 0.45 tolerated(0.39) benign(0.002) TCGA-FS-A1ZA-06 7 51092997 51092997 G A COBL Missense_Mutation p.P1193S 0.32 tolerated(0.28) benign(0.065) TCGA-FS-A1ZA-06 7 6189901 6189901 C T USP42 Missense_Mutation p.P692S 0.38 tolerated(0.56) possibly_damaging(0.886) TCGA-FS-A1ZA-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.25 deleterious(0) possibly_damaging(0.869) TCGA-FS-A1ZA-06 7 70853379 70853379 G A WBSCR17 Missense_Mutation p.S194N 0.33 deleterious(0) possibly_damaging(0.707) TCGA-FS-A1ZA-06 7 72717596 72717596 C T NSUN5 Splice_Site p.X429_splice 0.36 TCGA-FS-A1ZA-06 7 72754775 72754775 G A FKBP6 Missense_Mutation p.G242R 0.47 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 7 73245539 73245539 C T CLDN4 Missense_Mutation p.S3F 0.34 deleterious(0) possibly_damaging(0.832) TCGA-FS-A1ZA-06 7 73638363 73638363 G A LAT2 Missense_Mutation p.G155D 0.50 tolerated(0.53) benign(0.001) TCGA-FS-A1ZA-06 7 75140349 75140349 G A Y_RNA 3'Flank 0.32 TCGA-FS-A1ZA-06 7 82580330 82580330 G A PCLO Missense_Mutation p.P3192S 0.37 unknown(0) TCGA-FS-A1ZA-06 7 82584459 82584459 C T PCLO Missense_Mutation p.R1937Q 0.32 unknown(0) TCGA-FS-A1ZA-06 7 92763378 92763378 G A SAMD9L Missense_Mutation p.P636L 0.32 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZA-06 7 95224396 95224396 C T PDK4 Missense_Mutation p.E71K 0.28 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZA-06 7 97369266 97369266 T G TAC1 3'UTR 0.33 TCGA-FS-A1ZA-06 7 98449069 98449069 G A TMEM130 Silent p.Y327Y 0.26 TCGA-FS-A1ZA-06 7 99221766 99221766 G A ZSCAN25 Silent p.G256G 0.31 TCGA-FS-A1ZA-06 7 99332660 99332660 C T CYP3A7 Silent p.L19L 0.33 TCGA-FS-A1ZA-06 7 99565809 99565809 C T AZGP1 Silent p.L194L 0.38 TCGA-FS-A1ZA-06 7 99654752 99654752 G A ZSCAN21 Silent p.L41L 0.40 TCGA-FS-A1ZA-06 7 99654753 99654753 G A ZSCAN21 Missense_Mutation p.E42K 0.39 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 8 102570809 102570809 C T GRHL2 Silent p.I149I 0.23 TCGA-FS-A1ZA-06 8 105463544 105463544 C T DPYS Missense_Mutation p.R118Q 0.43 deleterious(0.04) possibly_damaging(0.731) TCGA-FS-A1ZA-06 8 106815015 106815015 G A ZFPM2 Missense_Mutation p.R902Q 0.39 tolerated(0.61) possibly_damaging(0.578) TCGA-FS-A1ZA-06 8 108264069 108264069 C T ANGPT1 3'UTR 0.23 TCGA-FS-A1ZA-06 8 108264104 108264104 C T ANGPT1 Missense_Mutation p.M492I 0.27 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZA-06 8 108334194 108334194 G A ANGPT1 Silent p.V246V 0.47 TCGA-FS-A1ZA-06 8 109797304 109797304 C T TMEM74 Silent p.K8K 0.36 TCGA-FS-A1ZA-06 8 110437383 110437383 C T PKHD1L1 Missense_Mutation p.H923Y 0.29 tolerated(0.1) benign(0.055) TCGA-FS-A1ZA-06 8 110454404 110454404 G A PKHD1L1 Missense_Mutation p.G1458E 0.39 deleterious(0) possibly_damaging(0.642) TCGA-FS-A1ZA-06 8 110466975 110466975 C A PKHD1L1 Missense_Mutation p.F2256L 0.20 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZA-06 8 110503282 110503282 G A PKHD1L1 Missense_Mutation p.D3356N 0.18 tolerated(0.38) benign(0.015) TCGA-FS-A1ZA-06 8 110510755 110510755 C T PKHD1L1 Missense_Mutation p.P3555L 0.49 tolerated(0.24) benign(0.135) TCGA-FS-A1ZA-06 8 114111130 114111130 G A CSMD3 Missense_Mutation p.P258S 0.30 deleterious(0) benign(0.113) TCGA-FS-A1ZA-06 8 132002703 132002703 G A ADCY8 Missense_Mutation p.A349V 0.47 tolerated(0.3) benign(0.388) TCGA-FS-A1ZA-06 8 139163736 139163736 A T FAM135B Missense_Mutation p.H994Q 0.38 tolerated(0.26) benign(0.093) TCGA-FS-A1ZA-06 8 139163864 139163864 C T FAM135B Missense_Mutation p.G952S 0.20 tolerated(0.14) benign(0.008) TCGA-FS-A1ZA-06 8 139838959 139838959 G A COL22A1 Missense_Mutation p.T304I 0.51 unknown(0) TCGA-FS-A1ZA-06 8 22102631 22102631 C T POLR3D 5'Flank 0.50 TCGA-FS-A1ZA-06 8 22138946 22138946 G A PIWIL2 Missense_Mutation p.E115K 0.26 tolerated_low_confidence(0.16) benign(0.002) TCGA-FS-A1ZA-06 8 24157543 24157543 A G ADAM28 Missense_Mutation p.R35G 0.25 deleterious(0) possibly_damaging(0.734) TCGA-FS-A1ZA-06 8 24357708 24357708 C T ADAM7 Silent p.L647L 0.50 TCGA-FS-A1ZA-06 8 28575513 28575513 C T EXTL3 Missense_Mutation p.S646F 0.46 deleterious(0) benign(0.392) TCGA-FS-A1ZA-06 8 29033683 29033683 G A KIF13B Missense_Mutation p.L283F 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 8 3081377 3081377 C T CSMD1 Missense_Mutation p.G1453E 0.58 probably_damaging(0.995) TCGA-FS-A1ZA-06 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.27 probably_damaging(0.912) TCGA-FS-A1ZA-06 8 35624480 35624480 C T UNC5D Silent p.L792L 0.50 TCGA-FS-A1ZA-06 8 38704275 38704275 C T TACC1 Missense_Mutation p.H763Y 0.24 deleterious(0) probably_damaging(0.926) TCGA-FS-A1ZA-06 8 54141976 54141976 G A OPRK1 Missense_Mutation p.R342W 0.27 deleterious(0) possibly_damaging(0.76) TCGA-FS-A1ZA-06 8 55541405 55541405 C T RP1 Nonsense_Mutation p.Q1655* 0.13 TCGA-FS-A1ZA-06 8 55542149 55542149 G A RP1 Missense_Mutation p.E1903K 0.60 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZA-06 8 55542424 55542424 C T RP1 Silent p.F1994F 0.33 TCGA-FS-A1ZA-06 8 56270244 56270244 C T XKR4 Silent p.F271F 0.41 TCGA-FS-A1ZA-06 8 57228802 57228802 C T SDR16C5 Silent p.R35R 0.24 TCGA-FS-A1ZA-06 8 62366700 62366700 G A CLVS1 Missense_Mutation p.D211N 0.24 deleterious(0.03) possibly_damaging(0.728) TCGA-FS-A1ZA-06 8 69434033 69434033 G A C8orf34 Splice_Site p.X256_splice 0.32 TCGA-FS-A1ZA-06 8 69434197 69434197 C T C8orf34 Missense_Mutation p.P310L 0.28 deleterious(0.01) possibly_damaging(0.767) TCGA-FS-A1ZA-06 8 72754776 72754776 G A MSC 3'UTR 0.48 TCGA-FS-A1ZA-06 8 73848429 73848429 C T KCNB2 Missense_Mutation p.T280I 0.11 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZA-06 8 77617253 77617253 G A ZFHX4 Silent p.Q310Q 0.46 TCGA-FS-A1ZA-06 8 77618162 77618162 C T ZFHX4 Silent p.I613I 0.16 TCGA-FS-A1ZA-06 8 77619967 77619967 G A ZFHX4 Missense_Mutation p.S926N 0.53 benign(0.383) TCGA-FS-A1ZA-06 8 77766795 77766795 G A ZFHX4 Silent p.L2546L 0.59 TCGA-FS-A1ZA-06 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.47 TCGA-FS-A1ZA-06 8 82355632 82355632 T A PMP2 3'UTR 0.21 TCGA-FS-A1ZA-06 8 8749933 8749933 G A MFHAS1 Silent p.S212S 0.55 TCGA-FS-A1ZA-06 8 89180048 89180048 T G MMP16 Missense_Mutation p.I187L 0.18 tolerated(1) benign(0.314) TCGA-FS-A1ZA-06 8 91029432 91029432 G A DECR1 Silent p.A50A 0.21 TCGA-FS-A1ZA-06 8 93026829 93026829 C T RUNX1T1 Missense_Mutation p.R160H 0.48 tolerated(0.09) benign(0.084) TCGA-FS-A1ZA-06 8 93026853 93026853 G A RUNX1T1 Missense_Mutation p.S152L 0.21 deleterious(0) possibly_damaging(0.768) TCGA-FS-A1ZA-06 8 95272478 95272478 C T GEM Missense_Mutation p.G85E 0.32 deleterious(0.02) possibly_damaging(0.463) TCGA-FS-A1ZA-06 8 99440889 99440889 G A KCNS2 Missense_Mutation p.E228K 0.46 tolerated(0.54) probably_damaging(0.972) TCGA-FS-A1ZA-06 9 107288807 107288807 C T OR13C4 Silent p.T228T 0.78 TCGA-FS-A1ZA-06 9 107332344 107332344 G A OR13C8 Missense_Mutation p.R299Q 0.91 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZA-06 9 109690269 109690269 C T ZNF462 Missense_Mutation p.S1359F 0.72 possibly_damaging(0.462) TCGA-FS-A1ZA-06 9 113173659 113173659 T A SVEP1 Missense_Mutation p.K2111I 0.74 probably_damaging(1) TCGA-FS-A1ZA-06 9 114886656 114886656 G A SUSD1 Missense_Mutation p.S256F 0.74 deleterious(0) benign(0.269) TCGA-FS-A1ZA-06 9 118969825 118969825 G A PAPPA Silent p.E523E 0.64 TCGA-FS-A1ZA-06 9 119188351 119188351 G A ASTN2 Silent p.L1216L 0.75 TCGA-FS-A1ZA-06 9 121929359 121929359 G A BRINP1 3'UTR 0.75 TCGA-FS-A1ZA-06 9 125391730 125391730 G A OR1B1 Missense_Mutation p.L29F 0.68 tolerated(0.46) probably_damaging(0.927) TCGA-FS-A1ZA-06 9 130911873 130911873 C T LCN2 Silent p.S23S 0.69 TCGA-FS-A1ZA-06 9 136029372 136029372 C T GBGT1 Silent p.R212R 0.65 TCGA-FS-A1ZA-06 9 137805459 137805459 C T FCN1 Missense_Mutation p.G103E 0.89 deleterious(0.05) benign(0.044) TCGA-FS-A1ZA-06 9 138517984 138517984 C A GLT6D1 Missense_Mutation p.R63M 0.84 deleterious(0) probably_damaging(0.975) TCGA-FS-A1ZA-06 9 138591292 138591292 G T SOHLH1 Missense_Mutation p.P8T 0.23 tolerated(0.09) probably_damaging(0.958) TCGA-FS-A1ZA-06 9 140109353 140109353 C T NDOR1 Silent p.L316L 0.92 TCGA-FS-A1ZA-06 9 140946556 140946556 G A CACNA1B Silent p.G1241G 1.00 TCGA-FS-A1ZA-06 9 18680362 18680362 C T ADAMTSL1 Nonsense_Mutation p.Q397* 0.73 TCGA-FS-A1ZA-06 9 21201479 21201479 G A IFNA7 3'UTR 0.75 TCGA-FS-A1ZA-06 9 21201913 21201913 G A IFNA7 Silent p.I84I 0.58 TCGA-FS-A1ZA-06 9 26978177 26978177 G A IFT74 Missense_Mutation p.G58S 0.89 tolerated(0.23) benign(0.173) TCGA-FS-A1ZA-06 9 32630672 32630672 C T TAF1L Missense_Mutation p.D1636N 0.77 tolerated(1) probably_damaging(0.997) TCGA-FS-A1ZA-06 9 340242 340242 C T DOCK8 Missense_Mutation p.P534S 0.55 tolerated(0.15) benign(0.002) TCGA-FS-A1ZA-06 9 35826009 35826009 C T FAM221B Silent p.E50E 0.69 TCGA-FS-A1ZA-06 9 37441524 37441524 T C ZBTB5 Missense_Mutation p.E342G 0.56 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZA-06 9 37955983 37955983 G A SHB Missense_Mutation p.R375C 0.92 deleterious(0) possibly_damaging(0.893) TCGA-FS-A1ZA-06 9 4573904 4573904 C T SLC1A1 Intron 0.70 TCGA-FS-A1ZA-06 9 5456109 5456109 G T CD274 5'UTR 0.62 TCGA-FS-A1ZA-06 9 5456110 5456110 A T CD274 5'UTR 0.62 TCGA-FS-A1ZA-06 9 5920074 5920074 A G KIAA2026 Silent p.S1974S 0.75 TCGA-FS-A1ZA-06 9 6329004 6329004 A G TPD52L3 Missense_Mutation p.R137G 0.74 tolerated(0.1) benign(0) TCGA-FS-A1ZA-06 9 74337425 74337425 A G TMEM2 Silent p.L729L 0.47 TCGA-FS-A1ZA-06 9 77562904 77562904 G A C9orf40 3'UTR 0.41 TCGA-FS-A1ZA-06 9 78547371 78547371 C A PCSK5 Missense_Mutation p.T90N 0.35 tolerated(0.2) possibly_damaging(0.839) TCGA-FS-A1ZA-06 9 78804140 78804140 G A PCSK5 Splice_Site p.X837_splice 0.50 TCGA-FS-A1ZA-06 9 79324197 79324197 G T PRUNE2 Nonsense_Mutation p.S998* 0.31 TCGA-FS-A1ZA-06 9 85677354 85677354 G A RASEF Silent p.P143P 0.43 TCGA-FS-A1ZA-06 9 93626931 93626931 C T SYK Nonsense_Mutation p.Q260* 0.49 TCGA-FS-A1ZA-06 9 94821582 94821582 G A SPTLC1 Missense_Mutation p.A190V 0.26 tolerated(0.06) benign(0.312) TCGA-FS-A1ZA-06 9 95610021 95610021 G A ZNF484 Missense_Mutation p.H352Y 0.27 deleterious(0) benign(0.082) TCGA-FS-A1ZA-06 9 99489264 99489264 C T RP11-535M15.2 RNA 0.75 TCGA-FS-A1ZA-06 X 10423070 10423070 C T MID1 Missense_Mutation p.V499M 0.29 deleterious(0.01) possibly_damaging(0.845) TCGA-FS-A1ZA-06 X 104961433 104961433 G A IL1RAPL2 Missense_Mutation p.M282I 0.64 tolerated(0.21) possibly_damaging(0.752) TCGA-FS-A1ZA-06 X 105891583 105891583 G A CXorf57 Missense_Mutation p.G649R 0.72 tolerated(0.41) benign(0.003) TCGA-FS-A1ZA-06 X 105891584 105891584 G A CXorf57 Missense_Mutation p.G649E 0.73 tolerated(1) benign(0.001) TCGA-FS-A1ZA-06 X 107381055 107381055 C T ATG4A Missense_Mutation p.P190L 0.60 tolerated(0.12) possibly_damaging(0.608) TCGA-FS-A1ZA-06 X 108902616 108902616 T A ACSL4 Missense_Mutation p.I649L 0.73 deleterious(0.01) benign(0.02) TCGA-FS-A1ZA-06 X 109943931 109943931 C T CHRDL1 Nonsense_Mutation p.W187* 0.61 TCGA-FS-A1ZA-06 X 117033005 117033005 C T KLHL13 Missense_Mutation p.D615N 0.70 tolerated(0.07) benign(0.015) TCGA-FS-A1ZA-06 X 12734426 12734426 C T FRMPD4 Silent p.A616A 0.25 TCGA-FS-A1ZA-06 X 12735169 12735169 G A FRMPD4 Missense_Mutation p.G864E 0.23 tolerated(1) benign(0.005) TCGA-FS-A1ZA-06 X 12906353 12906353 T C TLR7 Missense_Mutation p.L909S 0.52 deleterious(0) possibly_damaging(0.809) TCGA-FS-A1ZA-06 X 13057999 13057999 C T FAM9C Silent p.P122P 0.28 TCGA-FS-A1ZA-06 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.49 tolerated(0.29) benign(0.005) TCGA-FS-A1ZA-06 X 133379692 133379692 G A CCDC160 Missense_Mutation p.E288K 0.44 deleterious(0) possibly_damaging(0.486) TCGA-FS-A1ZA-06 X 140969226 140969226 G A MAGEC3 Missense_Mutation p.D185N 0.65 tolerated(0.2) benign(0.004) TCGA-FS-A1ZA-06 X 140995461 140995461 G A MAGEC1 Silent p.Q757Q 0.71 TCGA-FS-A1ZA-06 X 142717341 142717341 C T SLITRK4 Silent p.L528L 0.58 TCGA-FS-A1ZA-06 X 145109382 145109382 G A MIR891A RNA 0.61 TCGA-FS-A1ZA-06 X 145109383 145109383 G A MIR891A RNA 0.62 TCGA-FS-A1ZA-06 X 150912578 150912578 C T CNGA2 Nonsense_Mutation p.R535* 0.38 TCGA-FS-A1ZA-06 X 151303936 151303936 G A MAGEA10 Missense_Mutation p.P53S 0.22 tolerated(0.91) benign(0.023) TCGA-FS-A1ZA-06 X 151376557 151376557 C T GABRA3 Missense_Mutation p.E232K 0.45 tolerated(0.12) benign(0.309) TCGA-FS-A1ZA-06 X 151424446 151424446 G A GABRA3 Missense_Mutation p.R119W 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 X 151820005 151820005 C T GABRQ Silent p.L306L 0.19 TCGA-FS-A1ZA-06 X 151997739 151997739 C T CETN2 Missense_Mutation p.G82E 0.16 deleterious(0.01) benign(0.241) TCGA-FS-A1ZA-06 X 153137769 153137769 C G L1CAM Missense_Mutation p.E80Q 0.17 tolerated(0.34) possibly_damaging(0.72) TCGA-FS-A1ZA-06 X 153224842 153224842 G A HCFC1 Silent p.T515T 0.39 TCGA-FS-A1ZA-06 X 153697006 153697006 G A PLXNA3 Silent p.R1407R 0.25 TCGA-FS-A1ZA-06 X 153944592 153944592 G A GAB3 Missense_Mutation p.R29C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 X 155004072 155004072 G A SPRY3 Missense_Mutation p.S180N 0.19 tolerated(0.86) benign(0.074) TCGA-FS-A1ZA-06 X 16170386 16170386 C T GRPR Missense_Mutation p.S258F 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZA-06 X 17744950 17744950 C T NHS Silent p.T887T 0.40 TCGA-FS-A1ZA-06 X 18824656 18824656 C T PPEF1 Missense_Mutation p.R463C 0.42 deleterious(0.03) possibly_damaging(0.586) TCGA-FS-A1ZA-06 X 19416401 19416401 C T MAP3K15 Missense_Mutation p.R670Q 0.24 tolerated(0.07) benign(0.035) TCGA-FS-A1ZA-06 X 20071000 20071000 G A MAP7D2 Silent p.D197D 0.27 TCGA-FS-A1ZA-06 X 24580541 24580541 T A PCYT1B Missense_Mutation p.S327C 0.36 tolerated(0.06) benign(0.024) TCGA-FS-A1ZA-06 X 24828029 24828029 G A POLA1 Silent p.T987T 0.22 TCGA-FS-A1ZA-06 X 26157282 26157282 C T MAGEB18 Silent p.I60I 0.26 TCGA-FS-A1ZA-06 X 27998893 27998893 G A DCAF8L1 Missense_Mutation p.R187C 0.47 tolerated(0.2) benign(0.001) TCGA-FS-A1ZA-06 X 3021866 3021866 G A ARSF Missense_Mutation p.G389E 0.26 deleterious(0.02) probably_damaging(0.969) TCGA-FS-A1ZA-06 X 30718546 30718546 G A GK Missense_Mutation p.E249K 0.16 tolerated(0.88) benign(0.002) TCGA-FS-A1ZA-06 X 31089935 31089935 C T FTHL17 Missense_Mutation p.D46N 0.16 deleterious(0.03) benign(0.378) TCGA-FS-A1ZA-06 X 3238414 3238414 C T MXRA5 Missense_Mutation p.R1771K 0.36 tolerated(0.1) possibly_damaging(0.577) TCGA-FS-A1ZA-06 X 3241038 3241038 C T MXRA5 Silent p.E896E 0.46 TCGA-FS-A1ZA-06 X 32662369 32662369 C T DMD Missense_Mutation p.S404N 0.27 possibly_damaging(0.76) TCGA-FS-A1ZA-06 X 35974253 35974253 A G CXorf22 Silent p.K450K 0.35 TCGA-FS-A1ZA-06 X 37026802 37026802 C T FAM47C Missense_Mutation p.L107F 0.45 deleterious(0.01) possibly_damaging(0.9) TCGA-FS-A1ZA-06 X 37028267 37028267 C T FAM47C Missense_Mutation p.P595L 0.12 tolerated_low_confidence(0.54) benign(0) TCGA-FS-A1ZA-06 X 37028268 37028268 C T FAM47C Silent p.P595P 0.12 TCGA-FS-A1ZA-06 X 37029212 37029212 A T FAM47C Missense_Mutation p.K910I 0.28 deleterious(0.04) probably_damaging(0.931) TCGA-FS-A1ZA-06 X 37913546 37913546 G A SYTL5 Missense_Mutation p.C67Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZA-06 X 46472823 46472823 C T SLC9A7 Silent p.L609L 0.32 TCGA-FS-A1ZA-06 X 47272815 47272815 G A ZNF157 Missense_Mutation p.G448E 0.15 deleterious(0) possibly_damaging(0.891) TCGA-FS-A1ZA-06 X 47774409 47774409 G A ZNF81 Missense_Mutation p.D122N 0.32 tolerated(0.11) benign(0.006) TCGA-FS-A1ZA-06 X 47918214 47918214 C T ZNF630 Silent p.G539G 0.27 TCGA-FS-A1ZA-06 X 47919159 47919159 C T ZNF630 Silent p.K224K 0.30 TCGA-FS-A1ZA-06 X 48209480 48209480 C T SSX3 Silent p.G136G 0.24 TCGA-FS-A1ZA-06 X 48214615 48214615 C T SSX3 Splice_Site p.X23_splice 0.34 TCGA-FS-A1ZA-06 X 48418940 48418940 C T TBC1D25 Silent p.D548D 0.22 TCGA-FS-A1ZA-06 X 48674977 48674977 C T HDAC6 Silent p.F576F 0.58 TCGA-FS-A1ZA-06 X 48823477 48823477 C T KCND1 Silent p.K386K 0.30 TCGA-FS-A1ZA-06 X 49161411 49161411 C T GAGE10 Missense_Mutation p.P25S 0.18 tolerated(0.13) possibly_damaging(0.82) TCGA-FS-A1ZA-06 X 50094635 50094635 C T CCNB3 Missense_Mutation p.A1374V 0.36 deleterious(0.01) benign(0.145) TCGA-FS-A1ZA-06 X 5821216 5821216 C T NLGN4X Missense_Mutation p.M501I 0.53 deleterious(0.04) benign(0.306) TCGA-FS-A1ZA-06 X 5821348 5821348 G A NLGN4X Silent p.A457A 0.63 TCGA-FS-A1ZA-06 X 591781 591781 G A SHOX Missense_Mutation p.G50E 0.38 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-FS-A1ZA-06 X 65393461 65393461 C T HEPH Missense_Mutation p.P202L 0.18 tolerated(0.77) benign(0.002) TCGA-FS-A1ZA-06 X 69425042 69425042 G A DGAT2L6 3'UTR 0.64 TCGA-FS-A1ZA-06 X 73041045 73041045 C T XIST RNA 0.57 TCGA-FS-A1ZA-06 X 73043857 73043857 G A XIST RNA 0.62 TCGA-FS-A1ZA-06 X 73063804 73063804 G A XIST RNA 0.81 TCGA-FS-A1ZA-06 X 73069151 73069151 G A XIST RNA 0.57 TCGA-FS-A1ZA-06 X 73071822 73071822 C T XIST RNA 0.64 TCGA-FS-A1ZA-06 X 84534288 84534288 C T POF1B 3'UTR 0.50 TCGA-FS-A1ZB-06 10 102587325 102587325 C T PAX2 Silent p.A401A 0.21 TCGA-FS-A1ZB-06 10 103988324 103988324 C T ELOVL3 Silent p.L128L 0.28 TCGA-FS-A1ZB-06 10 114925428 114925428 C T TCF7L2 Silent p.S502S 0.19 TCGA-FS-A1ZB-06 10 123971035 123971035 A G TACC2 Silent p.Q2365Q 0.26 TCGA-FS-A1ZB-06 10 1262994 1262994 C T ADARB2 Missense_Mutation p.E527K 0.31 deleterious(0) probably_damaging(0.929) TCGA-FS-A1ZB-06 10 126694217 126694217 G A CTBP2 Intron 0.27 TCGA-FS-A1ZB-06 10 12870848 12870848 C T CAMK1D Missense_Mutation p.P374S 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FS-A1ZB-06 10 129901698 129901698 G A MKI67 Silent p.G2802G 0.25 TCGA-FS-A1ZB-06 10 16556625 16556625 C T C1QL3 Missense_Mutation p.G224R 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 10 24813599 24813599 C T KIAA1217 Missense_Mutation p.S935F 0.12 deleterious(0) possibly_damaging(0.894) TCGA-FS-A1ZB-06 10 24813600 24813600 C T KIAA1217 Silent p.S935S 0.13 TCGA-FS-A1ZB-06 10 27702304 27702304 C T PTCHD3 Silent p.R292R 0.21 TCGA-FS-A1ZB-06 10 27702305 27702305 C T PTCHD3 Missense_Mutation p.R292K 0.22 tolerated(0.37) benign(0.004) TCGA-FS-A1ZB-06 10 28414002 28414002 C T MPP7 Missense_Mutation p.D156N 0.19 deleterious(0.02) benign(0.032) TCGA-FS-A1ZB-06 10 50315705 50315705 C T VSTM4 Missense_Mutation p.E131K 0.19 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZB-06 10 55955504 55955504 G A PCDH15 Missense_Mutation p.S415L 0.25 tolerated(0.48) benign(0.271) TCGA-FS-A1ZB-06 10 70048753 70048753 G A PBLD Silent p.V149V 0.35 TCGA-FS-A1ZB-06 10 75407478 75407478 C T SYNPO2L Silent p.T644T 0.29 TCGA-FS-A1ZB-06 10 7786092 7786092 G A ITIH2 Missense_Mutation p.G753R 0.38 tolerated(0.11) possibly_damaging(0.467) TCGA-FS-A1ZB-06 10 90583082 90583082 G A ANKRD22 Silent p.I151I 0.27 TCGA-FS-A1ZB-06 10 96014752 96014752 C T PLCE1 Missense_Mutation p.P1167L 0.18 tolerated(0.11) probably_damaging(0.973) TCGA-FS-A1ZB-06 10 96466712 96466712 G A CYP2C18 Missense_Mutation p.E272K 0.23 tolerated(0.14) benign(0.016) TCGA-FS-A1ZB-06 11 105623911 105623911 G A GRIA4 Nonsense_Mutation p.W151* 0.53 TCGA-FS-A1ZB-06 11 112104342 112104342 C T PTS 3'UTR 0.36 TCGA-FS-A1ZB-06 11 113281433 113281433 C T DRD2 3'UTR 0.31 TCGA-FS-A1ZB-06 11 121023587 121023587 C T TECTA Intron 0.19 TCGA-FS-A1ZB-06 11 124120608 124120608 C T OR8G1 Silent p.F62F 0.22 TCGA-FS-A1ZB-06 11 124412729 124412729 G A OR8B12 Silent p.S274S 0.35 TCGA-FS-A1ZB-06 11 22747973 22747973 G A GAS2 Missense_Mutation p.G135S 0.14 deleterious(0.01) possibly_damaging(0.752) TCGA-FS-A1ZB-06 11 3423861 3423861 C T TSSC2 RNA 0.33 TCGA-FS-A1ZB-06 11 35456129 35456129 G A PAMR1 Silent p.D536D 0.23 TCGA-FS-A1ZB-06 11 46747541 46747541 G A F2 Missense_Mutation p.G231E 0.33 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZB-06 11 5290859 5290859 C T HBE1 Missense_Mutation p.G47E 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 11 55798785 55798785 G A OR5AS1 Silent p.V297V 0.23 TCGA-FS-A1ZB-06 11 56431305 56431305 G A OR5AR1 Silent p.L48L 0.25 TCGA-FS-A1ZB-06 11 60637231 60637231 C A ZP1 Silent p.P180P 0.26 TCGA-FS-A1ZB-06 11 64855612 64855612 C T ZFPL1 3'UTR 0.13 TCGA-FS-A1ZB-06 11 64855613 64855613 C T ZFPL1 3'UTR 0.13 TCGA-FS-A1ZB-06 11 7064319 7064319 T C NLRP14 Silent p.S354S 0.18 TCGA-FS-A1ZB-06 11 72945289 72945289 G A P2RY2 Missense_Mutation p.E29K 0.17 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZB-06 11 82985699 82985699 G A CCDC90B Silent p.L137L 0.50 TCGA-FS-A1ZB-06 12 101505378 101505378 C T ANO4 Silent p.L745L 0.28 TCGA-FS-A1ZB-06 12 103310870 103310870 C T PAH Silent p.R13R 0.13 TCGA-FS-A1ZB-06 12 106464638 106464638 C T NUAK1 Missense_Mutation p.G249E 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 12 113552602 113552602 C T RASAL1 Intron 0.24 TCGA-FS-A1ZB-06 12 124315125 124315125 T C DNAH10 Missense_Mutation p.V1357A 0.31 benign(0.014) TCGA-FS-A1ZB-06 12 21699368 21699368 G A GYS2 Missense_Mutation p.P487S 0.21 tolerated(0.06) possibly_damaging(0.886) TCGA-FS-A1ZB-06 12 21954097 21954097 G A ABCC9 Silent p.L1511L 0.32 TCGA-FS-A1ZB-06 12 31255459 31255459 C T DDX11 Silent p.G790G 0.37 TCGA-FS-A1ZB-06 12 33592490 33592490 C T SYT10 5'UTR 0.17 TCGA-FS-A1ZB-06 12 49742641 49742641 C T DNAJC22 5'UTR 0.22 TCGA-FS-A1ZB-06 12 50484051 50484051 C T SMARCD1 Silent p.L301L 0.32 TCGA-FS-A1ZB-06 12 53189282 53189282 G A KRT3 Missense_Mutation p.P182L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZB-06 12 57323194 57323194 C T SDR9C7 Missense_Mutation p.G235E 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 12 57430866 57430866 G A MYO1A Missense_Mutation p.L689F 0.26 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZB-06 12 6181605 6181605 C T VWF Missense_Mutation p.G334E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZB-06 12 66700177 66700177 C T HELB Silent p.F220F 0.23 TCGA-FS-A1ZB-06 12 70150363 70150363 C T RAB3IP Missense_Mutation p.R160C 0.17 deleterious(0) possibly_damaging(0.901) TCGA-FS-A1ZB-06 12 70986321 70986321 G T PTPRB Silent p.P507P 0.35 TCGA-FS-A1ZB-06 12 71286483 71286483 G A PTPRR Silent p.I111I 0.25 TCGA-FS-A1ZB-06 12 81693152 81693152 A C PPFIA2 Silent p.L884L 0.23 TCGA-FS-A1ZB-06 13 28980009 28980009 C T FLT1 Missense_Mutation p.E487K 0.21 tolerated(0.49) benign(0.042) TCGA-FS-A1ZB-06 13 32818254 32818254 C T FRY Missense_Mutation p.L2255F 0.20 deleterious(0.03) probably_damaging(0.928) TCGA-FS-A1ZB-06 13 39587605 39587605 G A PROSER1 Missense_Mutation p.S595L 0.26 tolerated_low_confidence(0.17) benign(0.004) TCGA-FS-A1ZB-06 13 41834968 41834968 G A MTRF1 Missense_Mutation p.H26Y 0.31 tolerated_low_confidence(0.72) benign(0) TCGA-FS-A1ZB-06 13 50204873 50204873 C T ARL11 Missense_Mutation p.P97L 0.20 tolerated(0.14) benign(0.302) TCGA-FS-A1ZB-06 13 92408650 92408650 G A GPC5 Nonsense_Mutation p.W419* 0.24 TCGA-FS-A1ZB-06 14 102771350 102771350 G A MOK 5'UTR 0.25 TCGA-FS-A1ZB-06 14 105413031 105413031 C T AHNAK2 Silent p.K2919K 0.26 TCGA-FS-A1ZB-06 14 20404440 20404440 G A OR4K1 Silent p.L205L 0.27 TCGA-FS-A1ZB-06 14 20444148 20444148 G A OR4K15 Missense_Mutation p.M157I 0.26 tolerated(0.14) benign(0.027) TCGA-FS-A1ZB-06 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.28 deleterious(0.04) benign(0.202) TCGA-FS-A1ZB-06 14 45628328 45628328 G T FANCM Nonsense_Mutation p.E476* 0.42 TCGA-FS-A1ZB-06 14 50298965 50298965 G A NEMF Missense_Mutation p.P256S 0.15 tolerated(0.05) probably_damaging(0.959) TCGA-FS-A1ZB-06 14 62567122 62567122 A G SYT16 Silent p.G545G 0.22 TCGA-FS-A1ZB-06 14 65209922 65209922 G A PLEKHG3 Missense_Mutation p.C998Y 0.19 tolerated(0.3) possibly_damaging(0.741) TCGA-FS-A1ZB-06 14 70634942 70634942 C T SLC8A3 Silent p.E66E 0.24 TCGA-FS-A1ZB-06 14 74516576 74516576 C A CCDC176 Missense_Mutation p.Q322K 0.08 deleterious(0.04) benign(0.037) TCGA-FS-A1ZB-06 14 88652268 88652268 C T KCNK10 Missense_Mutation p.A415T 0.26 tolerated_low_confidence(1) benign(0.015) TCGA-FS-A1ZB-06 14 94754765 94754765 G A SERPINA10 Missense_Mutation p.R284C 0.24 deleterious(0) possibly_damaging(0.881) TCGA-FS-A1ZB-06 15 33855189 33855189 G A RYR3 Missense_Mutation p.R375H 0.29 probably_damaging(0.991) TCGA-FS-A1ZB-06 15 34529692 34529692 G A SLC12A6 Silent p.I954I 0.24 TCGA-FS-A1ZB-06 15 40282489 40282489 G A EIF2AK4 Missense_Mutation p.D848N 0.24 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZB-06 15 42743105 42743105 G A ZNF106 Silent p.C432C 0.31 TCGA-FS-A1ZB-06 15 43928403 43928403 G A CATSPER2 Missense_Mutation p.S286F 0.19 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZB-06 15 56155176 56155176 G A NEDD4 Silent p.I550I 0.22 TCGA-FS-A1ZB-06 15 56981258 56981258 G A ZNF280D Missense_Mutation p.P254L 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZB-06 15 57731149 57731149 G A CGNL1 Missense_Mutation p.E318K 0.21 tolerated(0.06) benign(0.24) TCGA-FS-A1ZB-06 15 58430858 58430858 G A AQP9 Missense_Mutation p.G32S 0.24 tolerated(0.06) possibly_damaging(0.573) TCGA-FS-A1ZB-06 15 58465319 58465319 G A AQP9 Missense_Mutation p.M97I 0.23 tolerated(0.15) benign(0.314) TCGA-FS-A1ZB-06 15 58465346 58465346 G A AQP9 Silent p.V106V 0.23 TCGA-FS-A1ZB-06 15 72190967 72190967 G A MYO9A Missense_Mutation p.R1293C 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZB-06 15 74625065 74625065 G A CCDC33 Missense_Mutation p.G606E 0.29 deleterious(0.03) benign(0.362) TCGA-FS-A1ZB-06 15 76630278 76630278 G A ISL2 Missense_Mutation p.G73E 0.16 deleterious(0.03) probably_damaging(0.98) TCGA-FS-A1ZB-06 15 77407410 77407410 G A PEAK1 Silent p.S1443S 0.29 TCGA-FS-A1ZB-06 15 91835624 91835624 G A SV2B Missense_Mutation p.G632R 0.25 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZB-06 16 30976275 30976275 C T SETD1A Silent p.R404R 0.27 TCGA-FS-A1ZB-06 16 68289672 68289672 A - PLA2G15 Frame_Shift_Del p.N170Tfs*11 0.16 TCGA-FS-A1ZB-06 17 10358061 10358061 C T MYH4 Missense_Mutation p.M834I 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-FS-A1ZB-06 17 11726147 11726147 C T DNAH9 Silent p.F3014F 0.24 TCGA-FS-A1ZB-06 17 12666526 12666526 C T MYOCD Silent p.I842I 0.22 TCGA-FS-A1ZB-06 17 19315892 19315892 C T RNF112 Silent p.I59I 0.33 TCGA-FS-A1ZB-06 17 29220966 29220966 G A ATAD5 Missense_Mutation p.G1699R 0.32 tolerated(0.15) benign(0.12) TCGA-FS-A1ZB-06 17 34074961 34074961 G A GAS2L2 Missense_Mutation p.L247F 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 17 3539424 3539424 G A SHPK Silent p.S30S 0.24 TCGA-FS-A1ZB-06 17 39551875 39551875 C T KRT31 Missense_Mutation p.E197K 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 17 39578598 39578598 C T KRT37 Missense_Mutation p.G274E 0.29 tolerated(0.77) benign(0.042) TCGA-FS-A1ZB-06 17 46030312 46030312 C T PRR15L Missense_Mutation p.E97K 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.643) TCGA-FS-A1ZB-06 17 4805156 4805156 C T C17orf107 3'UTR 0.45 TCGA-FS-A1ZB-06 17 53797999 53797999 C T TMEM100 3'UTR 0.23 TCGA-FS-A1ZB-06 17 54939580 54939580 C T DGKE Missense_Mutation p.P498S 0.19 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZB-06 17 56232592 56232592 C T OR4D1 Silent p.F26F 0.24 TCGA-FS-A1ZB-06 17 56355339 56355339 C T MPO Silent p.R351R 0.24 TCGA-FS-A1ZB-06 17 58786684 58786684 C T BCAS3 Missense_Mutation p.P107S 0.39 tolerated(0.27) benign(0.007) TCGA-FS-A1ZB-06 17 62290901 62290901 G A TEX2 Missense_Mutation p.S226F 0.26 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZB-06 17 64225468 64225468 C T APOH Silent p.S10S 0.21 TCGA-FS-A1ZB-06 17 76396844 76396844 C T PGS1 Missense_Mutation p.T263M 0.36 deleterious(0.02) possibly_damaging(0.513) TCGA-FS-A1ZB-06 17 8791943 8791943 C T PIK3R5 Missense_Mutation p.M387I 0.24 tolerated(0.38) benign(0.026) TCGA-FS-A1ZB-06 18 14533112 14533112 C T POTEC Missense_Mutation p.D335N 0.20 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZB-06 18 31323374 31323374 C T ASXL3 Missense_Mutation p.P1188S 0.22 benign(0.169) TCGA-FS-A1ZB-06 18 56203356 56203356 C T ALPK2 Missense_Mutation p.D1355N 0.21 tolerated(0.32) benign(0.051) TCGA-FS-A1ZB-06 18 59174790 59174790 G A CDH20 Silent p.K338K 0.15 TCGA-FS-A1ZB-06 19 12976153 12976153 C T MAST1 Silent p.I554I 0.28 TCGA-FS-A1ZB-06 19 15075164 15075164 A G SLC1A6 Silent p.F186F 0.26 TCGA-FS-A1ZB-06 19 22940058 22940058 G A ZNF99 3'Flank 0.16 TCGA-FS-A1ZB-06 19 2396587 2396587 G A TMPRSS9 Missense_Mutation p.G65R 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 19 31025837 31025837 G A ZNF536 Missense_Mutation p.D752N 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZB-06 19 34712640 34712640 T C LSM14A Silent p.Y455Y 0.17 TCGA-FS-A1ZB-06 19 3762778 3762778 C T MRPL54 Missense_Mutation p.S27F 0.25 tolerated(0.05) benign(0.002) TCGA-FS-A1ZB-06 19 38958278 38958278 C T RYR1 Silent p.D1069D 0.26 TCGA-FS-A1ZB-06 19 4054985 4054985 G A ZBTB7A Silent p.A82A 0.35 TCGA-FS-A1ZB-06 19 43763094 43763094 C T PSG9 Silent p.T301T 0.21 TCGA-FS-A1ZB-06 19 47285682 47285682 G A SLC1A5 Missense_Mutation p.S261F 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZB-06 19 49363627 49363627 G A PLEKHA4 Silent p.S152S 0.15 TCGA-FS-A1ZB-06 19 49671814 49671814 C T TRPM4 Missense_Mutation p.S206L 0.31 deleterious(0.03) benign(0.004) TCGA-FS-A1ZB-06 19 50912866 50912866 C T POLD1 Silent p.S699S 0.26 TCGA-FS-A1ZB-06 19 56539572 56539572 C T NLRP5 Missense_Mutation p.P658L 0.26 tolerated(0.07) benign(0.344) TCGA-FS-A1ZB-06 19 58598336 58598336 C T ZSCAN18 Missense_Mutation p.E284K 0.21 deleterious(0.01) possibly_damaging(0.863) TCGA-FS-A1ZB-06 19 7621391 7621391 C T PNPLA6 Missense_Mutation p.S1059F 0.37 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZB-06 19 9077726 9077726 G A MUC16 Silent p.T3240T 0.27 TCGA-FS-A1ZB-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.32 tolerated(0.06) benign(0.006) TCGA-FS-A1ZB-06 1 118550793 118550793 C T SPAG17 Silent p.Q1487Q 0.16 TCGA-FS-A1ZB-06 1 12374213 12374213 C T VPS13D Missense_Mutation p.S2326F 0.17 probably_damaging(0.991) TCGA-FS-A1ZB-06 1 12887329 12887329 C T PRAMEF11 Nonsense_Mutation p.W176* 0.22 TCGA-FS-A1ZB-06 1 13036637 13036637 C T PRAMEF22 Missense_Mutation p.R237C 0.12 deleterious(0.01) benign(0.013) TCGA-FS-A1ZB-06 1 146740470 146740470 G T CHD1L Missense_Mutation p.D340Y 0.24 deleterious(0) possibly_damaging(0.572) TCGA-FS-A1ZB-06 1 149760076 149760076 C T FCGR1A Silent p.T154T 0.13 TCGA-FS-A1ZB-06 1 152278666 152278666 C T FLG Missense_Mutation p.G2899E 0.09 possibly_damaging(0.695) TCGA-FS-A1ZB-06 1 152280839 152280839 C T FLG Missense_Mutation p.G2175R 0.08 probably_damaging(0.953) TCGA-FS-A1ZB-06 1 152882398 152882398 C T IVL Missense_Mutation p.P42L 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A1ZB-06 1 153312870 153312870 C T PGLYRP4 Missense_Mutation p.D271N 0.19 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZB-06 1 160920977 160920977 C T ITLN2 Silent p.E99E 0.22 TCGA-FS-A1ZB-06 1 169388397 169388397 C T CCDC181 Missense_Mutation p.E357K 0.28 tolerated(0.05) possibly_damaging(0.859) TCGA-FS-A1ZB-06 1 170967593 170967593 G A MROH9 Intron 0.29 TCGA-FS-A1ZB-06 1 173490538 173490538 C T SLC9C2 Missense_Mutation p.E881K 0.17 tolerated(0.25) benign(0.091) TCGA-FS-A1ZB-06 1 173499164 173499164 T A SLC9C2 Silent p.A731A 0.24 TCGA-FS-A1ZB-06 1 175105031 175105031 G A TNN Silent p.R1127R 0.24 TCGA-FS-A1ZB-06 1 184801002 184801002 C T FAM129A Missense_Mutation p.M232I 0.19 deleterious(0) possibly_damaging(0.66) TCGA-FS-A1ZB-06 1 190068158 190068158 C T BRINP3 Missense_Mutation p.D431N 0.21 tolerated(0.13) benign(0.398) TCGA-FS-A1ZB-06 1 201334327 201334327 C T TNNT2 Missense_Mutation p.D125N 0.20 tolerated(0.28) probably_damaging(0.997) TCGA-FS-A1ZB-06 1 206225010 206225010 C T AVPR1B Silent p.F190F 0.28 TCGA-FS-A1ZB-06 1 208062929 208062929 C T CD34 Missense_Mutation p.R212Q 0.30 tolerated(1) benign(0.004) TCGA-FS-A1ZB-06 1 210415243 210415243 G A SERTAD4 Missense_Mutation p.G211E 0.28 tolerated(0.2) benign(0.017) TCGA-FS-A1ZB-06 1 21928267 21928267 T C RAP1GAP Missense_Mutation p.K585R 0.23 tolerated(0.21) benign(0.024) TCGA-FS-A1ZB-06 1 233296076 233296076 G A PCNXL2 Missense_Mutation p.S1157L 0.24 deleterious(0) benign(0.234) TCGA-FS-A1ZB-06 1 234541779 234541779 G A TARBP1 Nonsense_Mutation p.R1287* 0.26 TCGA-FS-A1ZB-06 1 236912437 236912437 T C ACTN2 Missense_Mutation p.L510S 0.20 tolerated(0.18) probably_damaging(1) TCGA-FS-A1ZB-06 1 248309135 248309135 G A OR2M5 Missense_Mutation p.G229E 0.23 tolerated(1) benign(0.073) TCGA-FS-A1ZB-06 1 248570031 248570031 G A OR2T1 Missense_Mutation p.E246K 0.23 tolerated(0.06) possibly_damaging(0.474) TCGA-FS-A1ZB-06 1 33060754 33060754 G A ZBTB8A Missense_Mutation p.R308K 0.27 possibly_damaging(0.798) TCGA-FS-A1ZB-06 1 34008417 34008417 G A CSMD2 Silent p.I2916I 0.27 TCGA-FS-A1ZB-06 1 34038260 34038260 C T CSMD2 Silent p.K2538K 0.23 TCGA-FS-A1ZB-06 1 34117982 34117982 C T CSMD2 Silent p.K1469K 0.26 TCGA-FS-A1ZB-06 1 43896717 43896717 C T SZT2 Silent p.P1567P 0.11 TCGA-FS-A1ZB-06 1 44072118 44072118 C T PTPRF Missense_Mutation p.P1231S 0.25 tolerated(0.82) benign(0.001) TCGA-FS-A1ZB-06 1 47325337 47325337 G A CYP4Z2P RNA 0.18 TCGA-FS-A1ZB-06 1 53267769 53267769 C T ZYG11B Silent p.F551F 0.16 TCGA-FS-A1ZB-06 1 60456397 60456397 G A C1orf87 Missense_Mutation p.S530L 0.25 tolerated(0.36) benign(0.004) TCGA-FS-A1ZB-06 1 70819698 70819698 T C ANKRD13C Missense_Mutation p.I132V 0.18 tolerated(0.12) possibly_damaging(0.507) TCGA-FS-A1ZB-06 1 75037652 75037652 G A C1orf173 Missense_Mutation p.H1248Y 0.25 deleterious(0.01) benign(0.182) TCGA-FS-A1ZB-06 1 75101970 75101970 G A C1orf173 Silent p.P199P 0.26 TCGA-FS-A1ZB-06 20 10629243 10629243 C T JAG1 Missense_Mutation p.R508K 0.28 deleterious(0.01) benign(0.064) TCGA-FS-A1ZB-06 20 139486 139486 G A DEFB127 Missense_Mutation p.E41K 0.16 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZB-06 20 20493762 20493762 G A RALGAPA2 Silent p.S1417S 0.14 TCGA-FS-A1ZB-06 20 34556638 34556638 C T CNBD2 5'UTR 0.57 TCGA-FS-A1ZB-06 20 40034065 40034065 G A CHD6 Missense_Mutation p.P2439L 0.28 deleterious(0.04) probably_damaging(1) TCGA-FS-A1ZB-06 20 44674583 44674583 G A SLC12A5 Missense_Mutation p.E569K 0.23 deleterious(0) benign(0.178) TCGA-FS-A1ZB-06 20 45017738 45017738 T C ELMO2 Missense_Mutation p.N122S 0.25 tolerated(0.42) benign(0.012) TCGA-FS-A1ZB-06 20 50701658 50701658 G A ZFP64 Missense_Mutation p.S459L 0.30 tolerated(0.07) benign(0.107) TCGA-FS-A1ZB-06 20 55027409 55027409 C T CASS4 Missense_Mutation p.P393S 0.22 tolerated(0.16) possibly_damaging(0.493) TCGA-FS-A1ZB-06 20 57766946 57766946 C T ZNF831 Missense_Mutation p.P291L 0.19 tolerated(0.15) benign(0.005) TCGA-FS-A1ZB-06 21 43867308 43867308 C T UBASH3A 3'UTR 0.21 TCGA-FS-A1ZB-06 21 44323421 44323421 G T NDUFV3 Missense_Mutation p.S100I 0.26 deleterious(0.01) benign(0.192) TCGA-FS-A1ZB-06 21 45523370 45523370 C T TRAPPC10 Silent p.I1246I 0.23 TCGA-FS-A1ZB-06 21 45970557 45970557 C T KRTAP10-2 3'UTR 0.23 TCGA-FS-A1ZB-06 22 19969131 19969131 A G ARVCF Missense_Mutation p.F167L 0.23 deleterious(0.01) benign(0.077) TCGA-FS-A1ZB-06 22 20024356 20024356 C T TANGO2 Missense_Mutation p.P12L 0.29 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZB-06 22 26423117 26423117 G A MYO18B Missense_Mutation p.D2393N 0.23 deleterious(0) possibly_damaging(0.876) TCGA-FS-A1ZB-06 22 30639731 30639731 G A LIF Missense_Mutation p.S173L 0.17 tolerated(0.18) possibly_damaging(0.681) TCGA-FS-A1ZB-06 22 39448129 39448129 C T APOBEC3F Silent p.F258F 0.23 TCGA-FS-A1ZB-06 22 46658038 46658038 C T PKDREJ Silent p.G394G 0.23 TCGA-FS-A1ZB-06 22 50655467 50655467 C T SELO Silent p.R585R 0.11 TCGA-FS-A1ZB-06 2 133175423 133175423 G A GPR39 Missense_Mutation p.E270K 0.23 tolerated(0.16) probably_damaging(0.995) TCGA-FS-A1ZB-06 2 155157940 155157940 T A GALNT13 Missense_Mutation p.S332T 0.18 tolerated(1) benign(0.002) TCGA-FS-A1ZB-06 2 157427695 157427695 C T GPD2 Missense_Mutation p.S553L 0.27 deleterious(0) benign(0.097) TCGA-FS-A1ZB-06 2 165946963 165946963 C T SCN3A Silent p.E1900E 0.29 TCGA-FS-A1ZB-06 2 166221774 166221774 G A SCN2A Splice_Site p.X1174_splice 0.29 TCGA-FS-A1ZB-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.26 benign(0.002) TCGA-FS-A1ZB-06 2 174131075 174131075 C T MLTK Missense_Mutation p.S667F 0.26 tolerated_low_confidence(0.07) benign(0.003) TCGA-FS-A1ZB-06 2 179581852 179581852 C T TTN Missense_Mutation p.D8537N 0.27 TCGA-FS-A1ZB-06 2 179613640 179613640 G A TTN Intron 0.19 TCGA-FS-A1ZB-06 2 179617872 179617872 C T TTN Missense_Mutation p.E3764K 0.15 TCGA-FS-A1ZB-06 2 179641816 179641816 A G TTN Intron 0.29 TCGA-FS-A1ZB-06 2 179702043 179702043 G A CCDC141 Silent p.T1301T 0.22 TCGA-FS-A1ZB-06 2 179732794 179732794 G A CCDC141 Missense_Mutation p.L845F 0.19 deleterious(0.03) benign(0.238) TCGA-FS-A1ZB-06 2 182360646 182360646 G A ITGA4 Missense_Mutation p.E508K 0.21 tolerated(0.18) benign(0.009) TCGA-FS-A1ZB-06 2 187627263 187627263 C T FAM171B Nonsense_Mutation p.Q732* 0.28 TCGA-FS-A1ZB-06 2 205986545 205986545 C T PARD3B Missense_Mutation p.S346F 0.19 tolerated(0.18) benign(0.014) TCGA-FS-A1ZB-06 2 207170180 207170180 C T ZDBF2 Missense_Mutation p.P310S 0.14 tolerated(0.52) possibly_damaging(0.641) TCGA-FS-A1ZB-06 2 207170181 207170181 C T ZDBF2 Missense_Mutation p.P310L 0.14 tolerated(0.38) possibly_damaging(0.726) TCGA-FS-A1ZB-06 2 208992975 208992975 G A CRYGC Silent p.A159A 0.19 TCGA-FS-A1ZB-06 2 213914548 213914548 G A IKZF2 Missense_Mutation p.L155F 0.13 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZB-06 2 219289022 219289022 C T VIL1 Missense_Mutation p.P33L 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-FS-A1ZB-06 2 219679735 219679735 C T CYP27A1 Silent p.F526F 0.35 TCGA-FS-A1ZB-06 2 220337666 220337666 G A SPEG Nonsense_Mutation p.W1332* 0.52 TCGA-FS-A1ZB-06 2 231223698 231223698 G A SP140L Missense_Mutation p.R97K 0.24 tolerated(0.08) benign(0.26) TCGA-FS-A1ZB-06 2 233320876 233320876 C T ALPI 5'UTR 0.57 TCGA-FS-A1ZB-06 2 26950541 26950541 G A KCNK3 Missense_Mutation p.G97E 0.18 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZB-06 2 48958405 48958405 G A LHCGR Missense_Mutation p.P65L 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 2 69472523 69472523 C T ANTXR1 Missense_Mutation p.P534L 0.75 deleterious_low_confidence(0.04) unknown(0) TCGA-FS-A1ZB-06 2 71191934 71191934 C T ATP6V1B1 Silent p.T439T 0.21 TCGA-FS-A1ZB-06 2 71730347 71730347 C T DYSF Silent p.F81F 0.19 TCGA-FS-A1ZB-06 2 72362371 72362371 G A CYP26B1 Missense_Mutation p.P203S 0.19 tolerated(0.58) benign(0.004) TCGA-FS-A1ZB-06 2 97217381 97217381 G C ARID5A Missense_Mutation p.L372F 0.36 tolerated(0.21) benign(0.02) TCGA-FS-A1ZB-06 3 105421148 105421148 G A CBLB Silent p.S583S 0.18 TCGA-FS-A1ZB-06 3 105421149 105421149 G A CBLB Missense_Mutation p.S583F 0.18 deleterious_low_confidence(0.03) benign(0.058) TCGA-FS-A1ZB-06 3 108281983 108281983 G A KIAA1524 Missense_Mutation p.P542S 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZB-06 3 112647750 112647750 G A CD200R1 Missense_Mutation p.H228Y 0.17 tolerated(0.28) possibly_damaging(0.642) TCGA-FS-A1ZB-06 3 126916050 126916050 C T C3orf56 Silent p.S174S 0.19 TCGA-FS-A1ZB-06 3 148459531 148459531 G A AGTR1 Missense_Mutation p.D237N 0.22 deleterious(0.01) possibly_damaging(0.688) TCGA-FS-A1ZB-06 3 155208579 155208579 C T PLCH1 Missense_Mutation p.D784N 0.17 tolerated(0.08) probably_damaging(1) TCGA-FS-A1ZB-06 3 157841716 157841716 C T RSRC1 Missense_Mutation p.R86C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZB-06 3 187089057 187089057 G T RTP4 Missense_Mutation p.G213W 0.23 deleterious(0.01) possibly_damaging(0.624) TCGA-FS-A1ZB-06 3 32804395 32804395 C T CNOT10 Intron 0.31 TCGA-FS-A1ZB-06 3 46399601 46399601 C T CCR2 Missense_Mutation p.P195S 0.24 tolerated(0.1) possibly_damaging(0.612) TCGA-FS-A1ZB-06 3 48613092 48613092 C T COL7A1 Silent p.G1982G 0.12 TCGA-FS-A1ZB-06 3 64601033 64601033 G A ADAMTS9 Silent p.F1051F 0.25 TCGA-FS-A1ZB-06 3 87322529 87322529 C T POU1F1 Missense_Mutation p.G87E 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.76) TCGA-FS-A1ZB-06 3 88199187 88199188 - A C3orf38 5'UTR 0.15 TCGA-FS-A1ZB-06 3 9034648 9034648 C T SRGAP3 Missense_Mutation p.D834N 0.24 tolerated(0.11) possibly_damaging(0.454) TCGA-FS-A1ZB-06 4 100356436 100356436 C T ADH7 5'Flank 0.42 TCGA-FS-A1ZB-06 4 108969916 108969916 G A LEF1 Intron 0.15 TCGA-FS-A1ZB-06 4 119736203 119736203 G A SEC24D Missense_Mutation p.P261S 0.37 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZB-06 4 40810384 40810384 C T NSUN7 Silent p.L529L 0.19 TCGA-FS-A1ZB-06 4 55136799 55136799 G A PDGFRA Splice_Site p.X374_splice 0.17 TCGA-FS-A1ZB-06 4 69795746 69795746 G A UGT2A3 Nonsense_Mutation p.R457* 0.17 TCGA-FS-A1ZB-06 4 72432772 72432772 C T SLC4A4 Missense_Mutation p.P1051S 0.20 tolerated(0.66) benign(0.002) TCGA-FS-A1ZB-06 4 98762039 98762039 C T STPG2 Silent p.E363E 0.19 TCGA-FS-A1ZB-06 5 112175912 112175912 C T APC Nonsense_Mutation p.Q1541* 0.25 TCGA-FS-A1ZB-06 5 138658193 138658193 C T MATR3 Silent p.S592S 0.24 TCGA-FS-A1ZB-06 5 140481797 140481797 G A PCDHB3 Missense_Mutation p.E522K 0.20 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-FS-A1ZB-06 5 140573066 140573066 C T PCDHB10 Missense_Mutation p.S314F 0.24 tolerated_low_confidence(0.08) benign(0.055) TCGA-FS-A1ZB-06 5 147478852 147478852 G A SPINK5 Missense_Mutation p.E356K 0.28 tolerated(0.15) benign(0.197) TCGA-FS-A1ZB-06 5 147796734 147796734 C T FBXO38 Silent p.L529L 0.29 TCGA-FS-A1ZB-06 5 19473252 19473252 C T CDH18 3'UTR 0.31 TCGA-FS-A1ZB-06 5 26915795 26915795 C T CDH9 Missense_Mutation p.E156K 0.30 deleterious(0.02) probably_damaging(0.951) TCGA-FS-A1ZB-06 5 72794965 72794965 G C BTF3 Missense_Mutation p.E47Q 0.27 tolerated(0.08) probably_damaging(0.918) TCGA-FS-A1ZB-06 6 128298122 128298122 C A PTPRK Silent p.V1269V 0.09 TCGA-FS-A1ZB-06 6 152809609 152809609 C T SYNE1 Missense_Mutation p.M323I 0.35 benign(0.006) TCGA-FS-A1ZB-06 6 41703931 41703931 C T TFEB 5'Flank 0.22 TCGA-FS-A1ZB-06 6 7584611 7584611 C T DSP Silent p.I2372I 0.36 TCGA-FS-A1ZB-06 6 97562161 97562161 C T KLHL32 Missense_Mutation p.S377F 0.19 deleterious(0.01) possibly_damaging(0.486) TCGA-FS-A1ZB-06 6 97562162 97562162 C T KLHL32 Silent p.S377S 0.19 TCGA-FS-A1ZB-06 7 116862934 116862934 C T ST7 Missense_Mutation p.S553L 0.40 tolerated_low_confidence(0.05) benign(0.01) TCGA-FS-A1ZB-06 7 127017346 127017346 C T ZNF800 Silent p.V65V 0.14 TCGA-FS-A1ZB-06 7 127017364 127017364 A T ZNF800 Missense_Mutation p.H59Q 0.09 tolerated(0.06) probably_damaging(0.979) TCGA-FS-A1ZB-06 7 136700081 136700081 C T CHRM2 Missense_Mutation p.P157S 0.23 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZB-06 7 140221655 140221655 C T DENND2A Missense_Mutation p.G971S 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 7 141673118 141673118 G A TAS2R38 Silent p.F124F 0.22 TCGA-FS-A1ZB-06 7 141759716 141759716 G A MGAM Missense_Mutation p.D1337N 0.14 tolerated(0.8) benign(0.006) TCGA-FS-A1ZB-06 7 142428833 142428833 A G TRBV28 Missense_Mutation p.I65V 0.22 deleterious(0.04) possibly_damaging(0.541) TCGA-FS-A1ZB-06 7 149129502 149129502 G A ZNF777 Missense_Mutation p.P621S 0.26 tolerated(0.12) possibly_damaging(0.754) TCGA-FS-A1ZB-06 7 20683156 20683156 G A ABCB5 Silent p.S193S 0.20 TCGA-FS-A1ZB-06 7 47894629 47894629 C T PKD1L1 Silent p.R1570R 0.21 TCGA-FS-A1ZB-06 7 48315712 48315712 C T ABCA13 Missense_Mutation p.T2150I 0.27 benign(0.07) TCGA-FS-A1ZB-06 7 73961560 73961560 C T GTF2IRD1 Silent p.I652I 0.33 TCGA-FS-A1ZB-06 7 7516754 7516754 G A COL28A1 Missense_Mutation p.P408S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZB-06 7 87445545 87445545 G A RUNDC3B Missense_Mutation p.G415E 0.31 tolerated(0.07) benign(0.012) TCGA-FS-A1ZB-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.38 probably_damaging(0.984) TCGA-FS-A1ZB-06 7 98559084 98559084 C T TRRAP Silent p.F2223F 0.37 TCGA-FS-A1ZB-06 8 110100013 110100013 G A TRHR Nonsense_Mutation p.W91* 0.24 TCGA-FS-A1ZB-06 8 110457323 110457323 C T PKHD1L1 Missense_Mutation p.S1742L 0.25 tolerated(0.1) benign(0.098) TCGA-FS-A1ZB-06 8 119936987 119936987 C T TNFRSF11B Missense_Mutation p.E278K 0.20 deleterious(0.05) probably_damaging(0.998) TCGA-FS-A1ZB-06 8 11994741 11994741 C T USP17L2 Missense_Mutation p.G510E 0.16 deleterious(0.05) possibly_damaging(0.702) TCGA-FS-A1ZB-06 8 139164357 139164357 G T FAM135B Missense_Mutation p.D787E 0.17 tolerated(0.21) benign(0.004) TCGA-FS-A1ZB-06 8 142221650 142221650 A T SLC45A4 Missense_Mutation p.F763Y 0.24 deleterious_low_confidence(0) benign(0.031) TCGA-FS-A1ZB-06 8 143395785 143395785 G A TSNARE1 Missense_Mutation p.S364F 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-FS-A1ZB-06 8 145535747 145535747 C T HSF1 Missense_Mutation p.S320F 0.23 tolerated(0.22) possibly_damaging(0.675) TCGA-FS-A1ZB-06 8 17412158 17412158 C T SLC7A2 Missense_Mutation p.S422F 0.25 deleterious(0) possibly_damaging(0.813) TCGA-FS-A1ZB-06 8 1842672 1842672 C T ARHGEF10 Silent p.I458I 0.21 TCGA-FS-A1ZB-06 8 24324528 24324528 C T ADAM7 Intron 0.31 TCGA-FS-A1ZB-06 8 29927235 29927235 G A TMEM66 Missense_Mutation p.P208L 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZB-06 8 54142243 54142243 G A OPRK1 Missense_Mutation p.L253F 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZB-06 8 88885116 88885116 C T DCAF4L2 Missense_Mutation p.D362N 0.25 tolerated(0.63) benign(0.002) TCGA-FS-A1ZB-06 9 107331799 107331799 G A OR13C8 Silent p.T117T 0.41 TCGA-FS-A1ZB-06 9 112686019 112686019 G A PALM2-AKAP2 Missense_Mutation p.E88K 0.50 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-FS-A1ZB-06 9 115760080 115760080 C T ZNF883 RNA 0.37 TCGA-FS-A1ZB-06 9 119115959 119115959 C T PAPPA Missense_Mutation p.P1412S 0.38 deleterious(0.03) possibly_damaging(0.641) TCGA-FS-A1ZB-06 9 21367911 21367911 C T IFNA13 Silent p.L33L 0.35 TCGA-FS-A1ZB-06 9 35044878 35044878 G A C9orf131 Missense_Mutation p.G751E 0.30 tolerated(0.74) possibly_damaging(0.536) TCGA-FS-A1ZB-06 9 5055745 5055745 A - JAK2 Frame_Shift_Del p.S339Afs*4 0.22 TCGA-FS-A1ZB-06 9 86588850 86588850 G A HNRNPK Silent p.L123L 0.20 TCGA-FS-A1ZB-06 X 102338384 102338384 C T NXF3 Missense_Mutation p.S161N 0.44 tolerated(0.27) benign(0.05) TCGA-FS-A1ZB-06 X 105449585 105449585 G A MUM1L1 Missense_Mutation p.E54K 0.39 tolerated(0.08) possibly_damaging(0.695) TCGA-FS-A1ZB-06 X 134989136 134989136 C T SAGE1 Missense_Mutation p.P263L 0.56 tolerated(0.11) benign(0.001) TCGA-FS-A1ZB-06 X 151820227 151820227 G T GABRQ Silent p.V380V 0.10 TCGA-FS-A1ZB-06 X 18959728 18959728 G A PHKA2 Silent p.S261S 0.61 TCGA-FS-A1ZB-06 X 2828785 2828785 G A ARSD Silent p.F350F 0.47 TCGA-FS-A1ZB-06 X 30268851 30268851 G A MAGEB1 Missense_Mutation p.E81K 0.38 tolerated(0.35) benign(0.007) TCGA-FS-A1ZC-06 10 104121493 104121493 A T GBF1 Missense_Mutation p.M503L 0.48 tolerated(0.2) benign(0.004) TCGA-FS-A1ZC-06 10 118896157 118896157 G A VAX1 Silent p.S85S 0.20 TCGA-FS-A1ZC-06 10 123843338 123843338 C T TACC2 Silent p.S441S 0.79 TCGA-FS-A1ZC-06 10 123845170 123845170 C T TACC2 Missense_Mutation p.A1052V 0.84 probably_damaging(0.965) TCGA-FS-A1ZC-06 10 123845215 123845215 G A TACC2 Missense_Mutation p.S1067N 0.80 benign(0.037) TCGA-FS-A1ZC-06 10 129861433 129861433 G A PTPRE Missense_Mutation p.E238K 0.93 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZC-06 10 129904640 129904640 G A MKI67 Missense_Mutation p.R1822C 0.87 deleterious(0.03) possibly_damaging(0.606) TCGA-FS-A1ZC-06 10 135345121 135345121 G A CYP2E1 Missense_Mutation p.D124N 0.79 deleterious(0.03) possibly_damaging(0.72) TCGA-FS-A1ZC-06 10 15720718 15720718 C T ITGA8 Intron 0.88 TCGA-FS-A1ZC-06 10 20290827 20290827 G A PLXDC2 Missense_Mutation p.R79Q 0.81 deleterious(0.01) probably_damaging(0.961) TCGA-FS-A1ZC-06 10 23611392 23611392 T G C10orf67 Missense_Mutation p.K135N 0.42 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZC-06 10 25887370 25887370 A G GPR158 Missense_Mutation p.K939E 0.88 tolerated(0.24) benign(0.025) TCGA-FS-A1ZC-06 10 30315096 30315096 C T KIAA1462 Silent p.R1327R 0.40 TCGA-FS-A1ZC-06 10 34663807 34663807 C T PARD3 Missense_Mutation p.E555K 0.36 deleterious(0) benign(0.107) TCGA-FS-A1ZC-06 10 45799226 45799226 G A OR13A1 Silent p.V215V 0.88 TCGA-FS-A1ZC-06 10 50396346 50396346 G A C10orf128 Silent p.F12F 0.54 TCGA-FS-A1ZC-06 10 50944432 50944432 C T OGDHL Missense_Mutation p.E909K 0.84 tolerated(0.39) benign(0) TCGA-FS-A1ZC-06 10 64159307 64159307 C T ZNF365 Intron 0.87 TCGA-FS-A1ZC-06 10 7213013 7213013 C T SFMBT2 Silent p.T807T 0.37 TCGA-FS-A1ZC-06 10 73048423 73048423 G A UNC5B Missense_Mutation p.G334R 0.85 tolerated(0.08) probably_damaging(1) TCGA-FS-A1ZC-06 10 73048424 73048424 G A UNC5B Missense_Mutation p.G334E 0.85 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZC-06 10 75408420 75408420 C T SYNPO2L Silent p.T330T 0.31 TCGA-FS-A1ZC-06 10 75834566 75834566 C T VCL Missense_Mutation p.R230C 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 10 96534946 96534946 C T CYP2C19 Silent p.F100F 0.38 TCGA-FS-A1ZC-06 10 96805708 96805708 C T CYP2C8 Missense_Mutation p.E274K 0.81 deleterious(0.02) benign(0.092) TCGA-FS-A1ZC-06 11 102737082 102737082 C T MMP12 RNA 0.55 TCGA-FS-A1ZC-06 11 105769154 105769154 G A GRIA4 Splice_Site p.X295_splice 0.53 TCGA-FS-A1ZC-06 11 113265695 113265695 G A ANKK1 Silent p.R175R 0.36 TCGA-FS-A1ZC-06 11 117089803 117089803 G A PCSK7 Silent p.L467L 0.58 TCGA-FS-A1ZC-06 11 117222542 117222542 C T CEP164 Silent p.F77F 0.66 TCGA-FS-A1ZC-06 11 117667821 117667821 G A DSCAML1 Missense_Mutation p.P52S 0.74 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZC-06 11 118359392 118359392 C T KMT2A Missense_Mutation p.P1466S 0.48 probably_damaging(0.998) TCGA-FS-A1ZC-06 11 119059239 119059239 G A PDZD3 Silent p.E346E 0.25 TCGA-FS-A1ZC-06 11 121000744 121000744 C T TECTA Missense_Mutation p.S922F 0.22 tolerated(0.07) benign(0.429) TCGA-FS-A1ZC-06 11 121421348 121421348 G A SORL1 Silent p.L745L 0.35 TCGA-FS-A1ZC-06 11 12277215 12277215 G A MICAL2 Missense_Mutation p.G958E 0.73 deleterious(0.02) possibly_damaging(0.821) TCGA-FS-A1ZC-06 11 123813587 123813587 C T OR6T1 Missense_Mutation p.S320N 0.25 tolerated(0.5) benign(0.011) TCGA-FS-A1ZC-06 11 123814103 123814103 G A OR6T1 Missense_Mutation p.S148F 0.54 deleterious(0) probably_damaging(0.972) TCGA-FS-A1ZC-06 11 123814492 123814492 G A OR6T1 Silent p.P18P 0.29 TCGA-FS-A1ZC-06 11 123847609 123847609 G A OR10S1 Silent p.L264L 0.33 TCGA-FS-A1ZC-06 11 124180491 124180491 G A OR8D1 Missense_Mutation p.P58S 0.55 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 11 124180492 124180492 G A OR8D1 Silent p.T57T 0.57 TCGA-FS-A1ZC-06 11 124189174 124189174 C T OR8D2 Missense_Mutation p.G307E 0.27 tolerated(0.26) benign(0.058) TCGA-FS-A1ZC-06 11 125617706 125617706 G A PATE1 Missense_Mutation p.R79K 0.21 tolerated(0.66) benign(0.003) TCGA-FS-A1ZC-06 11 125864879 125864879 G A CDON Missense_Mutation p.R811C 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-FS-A1ZC-06 11 129034227 129034227 G A ARHGAP32 Missense_Mutation p.T71I 0.56 deleterious(0) possibly_damaging(0.864) TCGA-FS-A1ZC-06 11 133790578 133790578 C T IGSF9B Silent p.E1014E 0.28 TCGA-FS-A1ZC-06 11 134252684 134252684 C T B3GAT1 Missense_Mutation p.G280R 0.25 tolerated(0.31) probably_damaging(0.982) TCGA-FS-A1ZC-06 11 18379502 18379502 C T GTF2H1 Missense_Mutation p.L422F 0.27 deleterious(0.01) possibly_damaging(0.767) TCGA-FS-A1ZC-06 11 18956272 18956272 C T MRGPRX1 Silent p.E20E 0.28 TCGA-FS-A1ZC-06 11 20486071 20486071 C T PRMT3 Silent p.I442I 0.62 TCGA-FS-A1ZC-06 11 2434027 2434027 A C TRPM5 Missense_Mutation p.L771R 0.32 deleterious(0) probably_damaging(0.963) TCGA-FS-A1ZC-06 11 25100277 25100277 G A LUZP2 3'UTR 0.41 TCGA-FS-A1ZC-06 11 27016635 27016635 G A FIBIN Missense_Mutation p.E188K 0.21 deleterious_low_confidence(0.01) benign(0.284) TCGA-FS-A1ZC-06 11 281032 281032 C T NLRP6 Missense_Mutation p.A433V 0.65 tolerated(0.22) benign(0.03) TCGA-FS-A1ZC-06 11 281033 281033 C T NLRP6 Silent p.A433A 0.65 TCGA-FS-A1ZC-06 11 34093290 34093290 C T CAPRIN1 Silent p.Y78Y 0.32 TCGA-FS-A1ZC-06 11 35747614 35747614 C T TRIM44 Missense_Mutation p.A297V 0.31 deleterious(0) unknown(0) TCGA-FS-A1ZC-06 11 36248915 36248915 G A LDLRAD3 Silent p.Q245Q 0.24 TCGA-FS-A1ZC-06 11 36615058 36615058 C T RAG2 Missense_Mutation p.G221R 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 11 3690520 3690520 A G CHRNA10 Missense_Mutation p.Y90H 0.55 tolerated(0.14) benign(0.013) TCGA-FS-A1ZC-06 11 4112520 4112520 C T STIM1 Missense_Mutation p.T517I 0.25 tolerated(0.07) benign(0.049) TCGA-FS-A1ZC-06 11 44130788 44130788 G A EXT2 Missense_Mutation p.G227E 0.22 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZC-06 11 4567352 4567352 G A OR52M1 Missense_Mutation p.R311K 0.21 tolerated(1) benign(0) TCGA-FS-A1ZC-06 11 4593483 4593483 G A C11orf40 Missense_Mutation p.S117F 0.65 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FS-A1ZC-06 11 46564654 46564654 G A AMBRA1 Intron 0.36 TCGA-FS-A1ZC-06 11 46690351 46690351 C T ATG13 Missense_Mutation p.P446L 0.31 tolerated(0.1) probably_damaging(0.994) TCGA-FS-A1ZC-06 11 4673747 4673747 C A OR51E1 5'UTR 0.67 TCGA-FS-A1ZC-06 11 47363612 47363612 G A MYBPC3 Missense_Mutation p.R574W 0.40 tolerated(0.08) possibly_damaging(0.903) TCGA-FS-A1ZC-06 11 48346522 48346522 C T OR4C3 Silent p.L10L 0.24 TCGA-FS-A1ZC-06 11 4903372 4903372 C T OR51T1 Silent p.P108P 0.37 TCGA-FS-A1ZC-06 11 4967974 4967974 G A OR51A4 Silent p.I119I 0.22 TCGA-FS-A1ZC-06 11 50003790 50003790 G A OR4C12 Missense_Mutation p.S83F 0.57 tolerated_low_confidence(0.14) possibly_damaging(0.494) TCGA-FS-A1ZC-06 11 5011962 5011962 C T MMP26 Missense_Mutation p.S152F 0.65 deleterious(0.03) probably_damaging(0.996) TCGA-FS-A1ZC-06 11 51411655 51411655 A T OR4A5 Missense_Mutation p.F247L 0.26 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-FS-A1ZC-06 11 5255642 5255642 C T HBD Missense_Mutation p.E8K 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-FS-A1ZC-06 11 5510270 5510270 G A OR52D1 Missense_Mutation p.A112T 0.31 tolerated(0.28) benign(0.025) TCGA-FS-A1ZC-06 11 55110705 55110705 T A OR4A16 Missense_Mutation p.F10Y 0.21 deleterious_low_confidence(0.01) benign(0.167) TCGA-FS-A1ZC-06 11 55703609 55703609 C T OR5I1 Missense_Mutation p.E90K 0.38 tolerated(0.3) benign(0.001) TCGA-FS-A1ZC-06 11 55861181 55861181 C T OR8I2 Missense_Mutation p.S133L 0.27 deleterious(0.04) benign(0.061) TCGA-FS-A1ZC-06 11 55999753 55999753 G A OR5T2 Silent p.S303S 0.27 TCGA-FS-A1ZC-06 11 58604630 58604630 C T GLYATL2 Missense_Mutation p.E112K 0.49 tolerated(0.15) benign(0.031) TCGA-FS-A1ZC-06 11 59132057 59132057 G A OR5AN1 Nonsense_Mutation p.W42* 0.55 TCGA-FS-A1ZC-06 11 59132584 59132584 C T OR5AN1 Missense_Mutation p.S218F 0.34 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZC-06 11 60698102 60698102 C T TMEM132A Silent p.H329H 0.25 TCGA-FS-A1ZC-06 11 62592034 62592034 C T STX5 Missense_Mutation p.G228D 0.62 tolerated(0.66) possibly_damaging(0.477) TCGA-FS-A1ZC-06 11 64108452 64108452 C T CCDC88B Silent p.L94L 0.27 TCGA-FS-A1ZC-06 11 64111696 64111696 C T CCDC88B Silent p.P561P 0.21 TCGA-FS-A1ZC-06 11 64496479 64496479 G A RASGRP2 Missense_Mutation p.R543C 0.18 deleterious(0.02) possibly_damaging(0.766) TCGA-FS-A1ZC-06 11 64522189 64522189 C T PYGM Silent p.T325T 0.50 TCGA-FS-A1ZC-06 11 64599960 64599960 G A CDC42BPG Silent p.T1009T 0.35 TCGA-FS-A1ZC-06 11 66191958 66191958 C T NPAS4 Missense_Mutation p.P533S 0.54 tolerated_low_confidence(0.15) benign(0.004) TCGA-FS-A1ZC-06 11 66311352 66311352 C T ZDHHC24 Missense_Mutation p.G128S 0.23 deleterious(0.01) possibly_damaging(0.645) TCGA-FS-A1ZC-06 11 6637555 6637555 A G TPP1 Missense_Mutation p.F356L 0.24 deleterious(0.02) possibly_damaging(0.882) TCGA-FS-A1ZC-06 11 66392297 66392297 C T RBM14 Missense_Mutation p.S317F 0.49 deleterious(0) benign(0.027) TCGA-FS-A1ZC-06 11 70007353 70007353 C T ANO1 Silent p.S555S 0.26 TCGA-FS-A1ZC-06 11 70331436 70331436 G A SHANK2 Silent p.S1655S 0.41 TCGA-FS-A1ZC-06 11 71907164 71907164 G A FOLR1 Nonsense_Mutation p.W239* 0.21 TCGA-FS-A1ZC-06 11 72145328 72145328 G A CLPB Missense_Mutation p.S64F 0.28 deleterious_low_confidence(0.05) benign(0.042) TCGA-FS-A1ZC-06 11 74168380 74168380 G A KCNE3 Silent p.L77L 0.33 TCGA-FS-A1ZC-06 11 76062262 76062262 A C PRKRIR Missense_Mutation p.C644W 0.22 deleterious(0.03) possibly_damaging(0.634) TCGA-FS-A1ZC-06 11 77409717 77409717 G A RSF1 Nonsense_Mutation p.R844* 0.28 TCGA-FS-A1ZC-06 11 77824955 77824955 A G ALG8 Missense_Mutation p.S252P 0.29 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 11 8161624 8161624 C T RIC3 Missense_Mutation p.G81R 0.67 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 11 86157399 86157399 C T ME3 Missense_Mutation p.G504E 0.29 deleterious(0.04) possibly_damaging(0.817) TCGA-FS-A1ZC-06 11 86158197 86158197 G A ME3 Silent p.A430A 0.27 TCGA-FS-A1ZC-06 11 92087642 92087642 C T FAT3 Silent p.P788P 0.58 TCGA-FS-A1ZC-06 11 92088331 92088331 C T FAT3 Missense_Mutation p.P1018L 0.59 probably_damaging(1) TCGA-FS-A1ZC-06 11 94113369 94113369 G A GPR83 Silent p.L406L 0.24 TCGA-FS-A1ZC-06 12 100451964 100451964 G A UHRF1BP1L Missense_Mutation p.L1031F 0.21 tolerated(0.27) benign(0.002) TCGA-FS-A1ZC-06 12 104033936 104033936 C T STAB2 Silent p.F314F 0.28 TCGA-FS-A1ZC-06 12 105151090 105151090 G A CHST11 Missense_Mutation p.E190K 0.29 tolerated(0.08) probably_damaging(0.954) TCGA-FS-A1ZC-06 12 109835574 109835574 C T MYO1H Missense_Mutation p.S160F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 12 112221090 112221090 G A RP11-162P23.2 Silent p.R113R 0.24 TCGA-FS-A1ZC-06 12 112622399 112622399 G A HECTD4 Silent p.P3311P 0.34 TCGA-FS-A1ZC-06 12 112622400 112622400 G A HECTD4 Missense_Mutation p.P3311L 0.32 benign(0) TCGA-FS-A1ZC-06 12 112669444 112669444 G A HECTD4 Missense_Mutation p.L1879F 0.53 probably_damaging(0.976) TCGA-FS-A1ZC-06 12 113906206 113906206 G A LHX5 Missense_Mutation p.S134L 0.65 tolerated(0.07) benign(0.027) TCGA-FS-A1ZC-06 12 117665378 117665378 G A NOS1 Silent p.F1192F 0.22 TCGA-FS-A1ZC-06 12 123186653 123186653 C T HCAR2 3'UTR 0.62 TCGA-FS-A1ZC-06 12 123187120 123187120 G A HCAR2 Silent p.A237A 0.27 TCGA-FS-A1ZC-06 12 123187121 123187121 G A HCAR2 Missense_Mutation p.A237V 0.28 tolerated(0.21) benign(0.043) TCGA-FS-A1ZC-06 12 123238315 123238315 T C DENR Silent p.L23L 0.24 TCGA-FS-A1ZC-06 12 125811186 125811186 C T TMEM132B Missense_Mutation p.S6F 0.22 tolerated_low_confidence(0.16) unknown(0) TCGA-FS-A1ZC-06 12 132589002 132589002 C T EP400NL Intron 0.73 TCGA-FS-A1ZC-06 12 16109941 16109941 C T DERA Missense_Mutation p.R35C 0.63 deleterious(0) benign(0.01) TCGA-FS-A1ZC-06 12 20868116 20868116 C T SLCO1C1 Silent p.F191F 0.24 TCGA-FS-A1ZC-06 12 24736954 24736954 G A LINC00477 RNA 0.30 TCGA-FS-A1ZC-06 12 3103986 3103986 C T TEAD4 Silent p.S18S 0.51 TCGA-FS-A1ZC-06 12 3103987 3103987 C T TEAD4 Missense_Mutation p.P19S 0.51 deleterious(0.01) possibly_damaging(0.528) TCGA-FS-A1ZC-06 12 32908811 32908811 T C YARS2 5'UTR 0.68 TCGA-FS-A1ZC-06 12 46125098 46125098 G A ARID2 Splice_Site p.X95_splice 0.54 TCGA-FS-A1ZC-06 12 47629084 47629084 C T PCED1B Missense_Mutation p.R80C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 12 51108322 51108322 C T DIP2B Missense_Mutation p.L932F 0.52 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 12 51108324 51108324 C T DIP2B Silent p.L932L 0.54 TCGA-FS-A1ZC-06 12 52841007 52841007 G A KRT6B Silent p.T554T 0.18 TCGA-FS-A1ZC-06 12 52845466 52845466 C T KRT6B Missense_Mutation p.G133R 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1ZC-06 12 53070866 53070866 C T KRT1 Missense_Mutation p.E411K 0.55 deleterious(0) probably_damaging(0.911) TCGA-FS-A1ZC-06 12 53232858 53232858 G C KRT78 3'UTR 0.21 TCGA-FS-A1ZC-06 12 53683298 53683298 C T ESPL1 Missense_Mutation p.S1678F 0.59 deleterious(0.01) possibly_damaging(0.823) TCGA-FS-A1ZC-06 12 54687052 54687052 G A NFE2 Silent p.F76F 0.28 TCGA-FS-A1ZC-06 12 55368220 55368220 G A TESPA1 Missense_Mutation p.P43S 0.18 tolerated(0.1) benign(0.1) TCGA-FS-A1ZC-06 12 55421051 55421051 C T NEUROD4 Silent p.S276S 0.22 TCGA-FS-A1ZC-06 12 55794584 55794584 C T OR6C65 Missense_Mutation p.S91F 0.54 deleterious_low_confidence(0.01) benign(0.111) TCGA-FS-A1ZC-06 12 55846762 55846762 C T OR6C2 Silent p.F255F 0.28 TCGA-FS-A1ZC-06 12 56349584 56349584 A G PMEL Missense_Mutation p.L512P 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 12 56380712 56380712 C T RAB5B 5'UTR 0.71 TCGA-FS-A1ZC-06 12 56975215 56975215 G A RBMS2 Missense_Mutation p.D219N 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZC-06 12 66151867 66151867 C T RPSAP52 RNA 0.60 TCGA-FS-A1ZC-06 12 66911726 66911726 C T GRIP1 Missense_Mutation p.R178H 0.22 deleterious(0.03) possibly_damaging(0.861) TCGA-FS-A1ZC-06 12 6772291 6772291 C T ING4 5'UTR 0.27 TCGA-FS-A1ZC-06 12 7649493 7649493 C T CD163 Missense_Mutation p.E339K 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 12 7867946 7867946 G A DPPA3 Missense_Mutation p.G84R 0.21 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZC-06 12 7982509 7982509 G A SLC2A14 Silent p.I145I 0.67 TCGA-FS-A1ZC-06 12 8023632 8023632 C T SLC2A14 5'UTR 0.46 TCGA-FS-A1ZC-06 12 80647257 80647257 G A OTOGL Missense_Mutation p.D424N 0.28 deleterious(0.01) benign(0.046) TCGA-FS-A1ZC-06 12 82147871 82147871 G A PPFIA2 Missense_Mutation p.R44C 0.28 deleterious(0) probably_damaging(0.947) TCGA-FS-A1ZC-06 12 9002863 9002863 C T A2ML1 Missense_Mutation p.P743S 0.31 tolerated(0.42) benign(0.096) TCGA-FS-A1ZC-06 12 99640563 99640563 G A ANKS1B Silent p.S612S 0.52 TCGA-FS-A1ZC-06 13 103718366 103718366 G A SLC10A2 Silent p.I78I 0.38 TCGA-FS-A1ZC-06 13 115091392 115091392 T C CHAMP1 Missense_Mutation p.F692S 0.11 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 13 23910621 23910621 G A SACS Missense_Mutation p.S2465L 0.66 benign(0.422) TCGA-FS-A1ZC-06 13 29600817 29600817 C T MTUS2 Missense_Mutation p.S671L 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A1ZC-06 13 30784559 30784559 G A KATNAL1 Silent p.L390L 0.30 TCGA-FS-A1ZC-06 13 35770382 35770382 C T NBEA Missense_Mutation p.P1770L 0.51 tolerated_low_confidence(0.62) benign(0.011) TCGA-FS-A1ZC-06 13 39264977 39264977 C T FREM2 Missense_Mutation p.R1166C 0.55 deleterious(0.05) benign(0.03) TCGA-FS-A1ZC-06 13 41133723 41133723 C T FOXO1 Silent p.V635V 0.30 TCGA-FS-A1ZC-06 13 43872620 43872620 G A ENOX1 Silent p.L436L 0.27 TCGA-FS-A1ZC-06 13 58299493 58299493 C T PCDH17 3'UTR 0.28 TCGA-FS-A1ZC-06 13 72053342 72053345 TCCC CTT DACH1 Frame_Shift_Del p.R611Kfs*17 0.21 TCGA-FS-A1ZC-06 13 78130041 78130041 C T SCEL Missense_Mutation p.P11S 0.49 tolerated(0.11) benign(0.077) TCGA-FS-A1ZC-06 13 97484880 97484880 C T HS6ST3 Missense_Mutation p.P282S 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 14 106110956 106110956 G A IGHG2 Nonsense_Mutation p.Q58* 0.92 TCGA-FS-A1ZC-06 14 22409792 22409792 G A TRAV9-2 Silent p.L94L 0.30 TCGA-FS-A1ZC-06 14 26941528 26941528 G A NOVA1 Nonsense_Mutation p.Q173* 0.83 TCGA-FS-A1ZC-06 14 33291974 33291974 G A AKAP6 Missense_Mutation p.R1652Q 0.83 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZC-06 14 61519157 61519157 T A SLC38A6 Intron 0.89 TCGA-FS-A1ZC-06 14 75248562 75248562 C T YLPM1 Missense_Mutation p.P606S 0.90 unknown(0) TCGA-FS-A1ZC-06 14 76452105 76452105 G A IFT43 5'Flank 0.89 TCGA-FS-A1ZC-06 14 81046764 81046764 A G CEP128 Missense_Mutation p.L937P 0.78 deleterious(0) benign(0.425) TCGA-FS-A1ZC-06 14 81862461 81862461 G A STON2 Silent p.S50S 0.92 TCGA-FS-A1ZC-06 14 92189528 92189528 G A CATSPERB Silent p.I58I 0.68 TCGA-FS-A1ZC-06 14 94933711 94933711 C T SERPINA9 Missense_Mutation p.E231K 0.84 tolerated(0.08) benign(0.196) TCGA-FS-A1ZC-06 15 20657765 20657765 C T HERC2P3 RNA 0.20 TCGA-FS-A1ZC-06 15 22383270 22383270 A T OR4N4 Silent p.P266P 0.18 TCGA-FS-A1ZC-06 15 25207312 25207312 A T SNURF Missense_Mutation p.E22D 0.38 tolerated_low_confidence(0.15) benign(0.374) TCGA-FS-A1ZC-06 15 25458861 25458861 G A SNORD115-24 RNA 0.29 TCGA-FS-A1ZC-06 15 25463818 25463818 C T SNORD115-27 5'Flank 0.58 TCGA-FS-A1ZC-06 15 25488796 25488796 G A SNORD115-40 RNA 0.57 TCGA-FS-A1ZC-06 15 33835881 33835881 G A RYR3 Silent p.T235T 0.33 TCGA-FS-A1ZC-06 15 34396452 34396452 C T PGBD4 Missense_Mutation p.P574S 0.52 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-FS-A1ZC-06 15 39876278 39876278 G A THBS1 Missense_Mutation p.D265N 0.62 tolerated_low_confidence(0.17) benign(0.008) TCGA-FS-A1ZC-06 15 52543596 52543596 A G MYO5C Silent p.F551F 0.25 TCGA-FS-A1ZC-06 15 53081057 53081057 G A ONECUT1 Missense_Mutation p.S342F 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 15 54306263 54306263 A G UNC13C Missense_Mutation p.D388G 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 15 54306885 54306885 G A UNC13C Silent p.A595A 0.46 TCGA-FS-A1ZC-06 15 59910424 59910424 C T GCNT3 5'UTR 0.39 TCGA-FS-A1ZC-06 15 63950905 63950905 G A HERC1 Missense_Mutation p.S3146F 0.22 benign(0.235) TCGA-FS-A1ZC-06 15 64005676 64005676 G A HERC1 Missense_Mutation p.H1447Y 0.41 possibly_damaging(0.607) TCGA-FS-A1ZC-06 15 64005677 64005677 G A HERC1 Silent p.I1446I 0.41 TCGA-FS-A1ZC-06 15 69238462 69238462 G A SPESP1 Missense_Mutation p.E197K 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 15 74290542 74290542 C T PML Silent p.F109F 0.57 TCGA-FS-A1ZC-06 15 75763107 75763107 G A PTPN9 Nonsense_Mutation p.R425* 0.45 TCGA-FS-A1ZC-06 15 83456187 83456187 C T FSD2 5'UTR 0.47 TCGA-FS-A1ZC-06 15 85476408 85476408 G A SLC28A1 Silent p.V372V 0.41 TCGA-FS-A1ZC-06 15 91795167 91795167 C T SV2B Silent p.S190S 0.45 TCGA-FS-A1ZC-06 16 1260439 1260439 C T CACNA1H Silent p.F1305F 0.17 TCGA-FS-A1ZC-06 16 1816294 1816294 G A MAPK8IP3 Silent p.E900E 0.38 TCGA-FS-A1ZC-06 16 19884076 19884076 G A GPRC5B Missense_Mutation p.A31V 0.40 tolerated(0.27) benign(0.146) TCGA-FS-A1ZC-06 16 20494446 20494446 G A ACSM2A Missense_Mutation p.E526K 0.30 deleterious(0) benign(0.091) TCGA-FS-A1ZC-06 16 20634825 20634825 C T ACSM1 Missense_Mutation p.E573K 0.58 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 16 21033336 21033336 G A DNAH3 Silent p.I1911I 0.23 TCGA-FS-A1ZC-06 16 21060892 21060892 C T DNAH3 Missense_Mutation p.E1487K 0.51 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZC-06 16 23457228 23457228 G A COG7 Missense_Mutation p.A75V 0.51 tolerated(0.15) possibly_damaging(0.701) TCGA-FS-A1ZC-06 16 24902367 24902367 C T SLC5A11 Missense_Mutation p.P281L 0.59 tolerated(1) possibly_damaging(0.516) TCGA-FS-A1ZC-06 16 2815820 2815820 C T SRRM2 Missense_Mutation p.S1764L 0.35 unknown(0) TCGA-FS-A1ZC-06 16 28509501 28509501 C T APOBR Missense_Mutation p.R1019W 0.40 deleterious(0.04) unknown(0) TCGA-FS-A1ZC-06 16 28515112 28515112 C T IL27 Silent p.A69A 0.34 TCGA-FS-A1ZC-06 16 28600457 28600457 C T CCDC101 Silent p.I87I 0.33 TCGA-FS-A1ZC-06 16 30510543 30510543 C T ITGAL Missense_Mutation p.P661S 0.51 tolerated(0.8) benign(0.014) TCGA-FS-A1ZC-06 16 30544148 30544148 G A ZNF747 3'UTR 0.27 TCGA-FS-A1ZC-06 16 30972749 30972749 C T SETD1A Silent p.G136G 0.52 TCGA-FS-A1ZC-06 16 31106959 31106959 T C VKORC1 5'Flank 0.56 TCGA-FS-A1ZC-06 16 3406061 3406061 G A OR2C1 Missense_Mutation p.G41R 0.56 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZC-06 16 3614585 3614585 G A NLRC3 Missense_Mutation p.P165L 0.33 tolerated(0.23) benign(0.017) TCGA-FS-A1ZC-06 16 46638273 46638273 G A SHCBP1 Silent p.L264L 0.29 TCGA-FS-A1ZC-06 16 4834003 4834003 G A SEPT12 Silent p.I147I 0.22 TCGA-FS-A1ZC-06 16 50666299 50666300 - CACGT NKD1 Frame_Shift_Ins p.Q271Rfs*78 0.23 TCGA-FS-A1ZC-06 16 55608593 55608593 C T LPCAT2 Silent p.V422V 0.31 TCGA-FS-A1ZC-06 16 61891023 61891023 C T CDH8 Missense_Mutation p.A223T 0.60 deleterious(0) probably_damaging(0.918) TCGA-FS-A1ZC-06 16 61935354 61935354 C T CDH8 Silent p.G92G 0.25 TCGA-FS-A1ZC-06 16 67915273 67915273 C T EDC4 Silent p.S914S 0.24 TCGA-FS-A1ZC-06 16 68014054 68014054 G A DPEP3 Missense_Mutation p.T102I 0.19 tolerated(0.07) benign(0.033) TCGA-FS-A1ZC-06 16 68721503 68721503 C T CDH3 Silent p.I553I 0.30 TCGA-FS-A1ZC-06 16 70986416 70986416 G A HYDIN Missense_Mutation p.R2147C 0.36 probably_damaging(0.988) TCGA-FS-A1ZC-06 16 72991901 72991901 C T ZFHX3 Missense_Mutation p.R715Q 0.26 probably_damaging(0.978) TCGA-FS-A1ZC-06 16 72992171 72992171 G A ZFHX3 Missense_Mutation p.S625F 0.68 benign(0.197) TCGA-FS-A1ZC-06 16 75512971 75512971 G A CHST6 Silent p.I252I 0.46 TCGA-FS-A1ZC-06 16 81303860 81303860 G A BCMO1 Missense_Mutation p.E314K 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZC-06 16 81979868 81979868 G A PLCG2 Silent p.L1190L 0.26 TCGA-FS-A1ZC-06 16 84256408 84256408 C T KCNG4 Silent p.G325G 0.67 TCGA-FS-A1ZC-06 17 10204219 10204219 C T MYH13 3'UTR 0.26 TCGA-FS-A1ZC-06 17 10267766 10267766 G A MYH13 Nonsense_Mutation p.Q28* 0.50 TCGA-FS-A1ZC-06 17 10397913 10397913 C T MYH1 Silent p.E1848E 0.51 TCGA-FS-A1ZC-06 17 10408762 10408762 C T MYH1 Silent p.E747E 0.35 TCGA-FS-A1ZC-06 17 11711058 11711058 C T DNAH9 Silent p.I2810I 0.60 TCGA-FS-A1ZC-06 17 16703437 16703437 G A CCDC144A 3'UTR 0.12 TCGA-FS-A1ZC-06 17 18233963 18233963 G A SHMT1 Silent p.I359I 0.35 TCGA-FS-A1ZC-06 17 1840794 1840794 C G RTN4RL1 Missense_Mutation p.G108R 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 17 21319617 21319617 C T KCNJ12 Silent p.I321I 0.08 TCGA-FS-A1ZC-06 17 27380136 27380139 CCTC TTT PIPOX Frame_Shift_Del p.R156Efs*10 0.25 TCGA-FS-A1ZC-06 17 27442392 27442392 G A MYO18A Silent p.T765T 0.67 TCGA-FS-A1ZC-06 17 3372601 3372601 C T SPATA22 Missense_Mutation p.E7K 0.35 deleterious(0.04) probably_damaging(0.915) TCGA-FS-A1ZC-06 17 3527496 3527496 G A SHPK Missense_Mutation p.P114S 0.11 tolerated(0.44) benign(0.007) TCGA-FS-A1ZC-06 17 37944556 37944556 C T IKZF3 Missense_Mutation p.E222K 0.33 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZC-06 17 38122577 38122577 G A GSDMA Silent p.V93V 0.66 TCGA-FS-A1ZC-06 17 3819561 3819561 C T P2RX1 5'UTR 0.54 TCGA-FS-A1ZC-06 17 38319959 38319959 C T CASC3 Silent p.G337G 0.59 TCGA-FS-A1ZC-06 17 38323820 38323820 C T CASC3 Missense_Mutation p.P536S 0.21 deleterious_low_confidence(0.02) probably_damaging(0.918) TCGA-FS-A1ZC-06 17 38340576 38340576 A T RAPGEFL1 Missense_Mutation p.E31V 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-FS-A1ZC-06 17 39092725 39092725 G A KRT23 Missense_Mutation p.S44F 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZC-06 17 3917794 3917794 G A ZZEF1 Missense_Mutation p.P2721S 0.56 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZC-06 17 39670983 39670983 G A KRT15 Intron 0.24 TCGA-FS-A1ZC-06 17 39743102 39743102 G C KRT14 5'UTR 0.29 TCGA-FS-A1ZC-06 17 39884452 39884452 C T HAP1 Splice_Site p.X400_splice 0.22 TCGA-FS-A1ZC-06 17 40673204 40673204 C T ATP6V0A1 3'UTR 0.32 TCGA-FS-A1ZC-06 17 41004593 41004593 G A AOC3 Silent p.V411V 0.68 TCGA-FS-A1ZC-06 17 42636355 42636355 C T FZD2 Silent p.A433A 0.27 TCGA-FS-A1ZC-06 17 43010091 43010091 G A KIF18B Silent p.P396P 0.27 TCGA-FS-A1ZC-06 17 43552601 43552601 G A PLEKHM1 Missense_Mutation p.S263F 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-FS-A1ZC-06 17 44950057 44950057 C T WNT9B Silent p.L84L 0.35 TCGA-FS-A1ZC-06 17 4711685 4711685 C T PLD2 Silent p.V119V 0.24 TCGA-FS-A1ZC-06 17 47299496 47299496 C T ABI3 Silent p.P282P 0.37 TCGA-FS-A1ZC-06 17 48433213 48433213 G A XYLT2 Missense_Mutation p.R387Q 0.28 deleterious(0) probably_damaging(0.953) TCGA-FS-A1ZC-06 17 48746818 48746818 C T ABCC3 Silent p.L724L 0.25 TCGA-FS-A1ZC-06 17 5040009 5040009 C T USP6 Missense_Mutation p.P247S 0.26 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-FS-A1ZC-06 17 5072137 5072137 G A USP6 Missense_Mutation p.E1102K 0.26 tolerated_low_confidence(0.3) probably_damaging(0.95) TCGA-FS-A1ZC-06 17 56647821 56647821 C A TEX14 Missense_Mutation p.A1294S 0.25 tolerated(0.37) benign(0.005) TCGA-FS-A1ZC-06 17 61615918 61615918 C T KCNH6 Missense_Mutation p.P617S 0.23 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZC-06 17 64785059 64785059 G A PRKCA Missense_Mutation p.E606K 0.32 deleterious(0.01) benign(0.083) TCGA-FS-A1ZC-06 17 65871076 65871076 C T BPTF Missense_Mutation p.L602F 0.63 benign(0.004) TCGA-FS-A1ZC-06 17 66871498 66871498 C T ABCA8 Missense_Mutation p.D1472N 0.26 tolerated(0.18) benign(0.077) TCGA-FS-A1ZC-06 17 6909835 6909835 C T ALOX12 Silent p.Y483Y 0.32 TCGA-FS-A1ZC-06 17 6978644 6978644 G A CLEC10A Intron 0.41 TCGA-FS-A1ZC-06 17 72248444 72248444 C T TTYH2 Silent p.S396S 0.32 TCGA-FS-A1ZC-06 17 72305472 72305472 C T DNAI2 Missense_Mutation p.T431I 0.25 tolerated(0.06) benign(0.027) TCGA-FS-A1ZC-06 17 72608757 72608757 G A CD300E 3'UTR 0.26 TCGA-FS-A1ZC-06 17 73498292 73498292 C T CASKIN2 Missense_Mutation p.E955K 0.27 deleterious(0) possibly_damaging(0.899) TCGA-FS-A1ZC-06 17 73539582 73539582 G A LLGL2 Silent p.K25K 0.34 TCGA-FS-A1ZC-06 17 74902120 74902120 C T MGAT5B Silent p.F303F 0.35 TCGA-FS-A1ZC-06 17 76803147 76803147 G A USP36 Missense_Mutation p.S660F 0.62 deleterious(0.01) benign(0.419) TCGA-FS-A1ZC-06 17 7808417 7808417 G A CHD3 Splice_Site p.X1417_splice 0.55 TCGA-FS-A1ZC-06 17 79910903 79910903 C T NOTUM Silent p.Q475Q 0.29 TCGA-FS-A1ZC-06 17 8808179 8808179 G C PIK3R5 Nonsense_Mutation p.Y109* 0.60 TCGA-FS-A1ZC-06 18 19116057 19116057 G A ESCO1 Silent p.F711F 0.21 TCGA-FS-A1ZC-06 18 19997664 19997664 C T CTAGE1 Silent p.T37T 0.42 TCGA-FS-A1ZC-06 18 20572771 20572771 T A RBBP8 Silent p.S327S 0.27 TCGA-FS-A1ZC-06 18 21649157 21649157 C T TTC39C Missense_Mutation p.R128W 0.21 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZC-06 18 22807497 22807497 G A ZNF521 Missense_Mutation p.R129C 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 18 28712434 28712434 C T DSC1 Intron 0.21 TCGA-FS-A1ZC-06 18 28736122 28736122 G A DSC1 Missense_Mutation p.P119S 0.21 tolerated(0.74) benign(0.003) TCGA-FS-A1ZC-06 18 2891506 2891506 G A EMILIN2 Missense_Mutation p.E461K 0.24 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZC-06 18 30672827 30672827 C T CCDC178 Silent p.E762E 0.45 TCGA-FS-A1ZC-06 18 3126739 3126739 C T MYOM1 Missense_Mutation p.R984K 0.23 tolerated(0.5) benign(0.004) TCGA-FS-A1ZC-06 18 31432786 31432786 G A NOL4 3'UTR 0.37 TCGA-FS-A1ZC-06 18 31709935 31709935 A G NOL4 Missense_Mutation p.V105A 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A1ZC-06 18 42531573 42531573 G A SETBP1 Silent p.P756P 0.25 TCGA-FS-A1ZC-06 18 44559327 44559327 C T TCEB3B 3'UTR 0.19 TCGA-FS-A1ZC-06 18 45377680 45377680 G A SMAD2 Missense_Mutation p.S250F 0.23 deleterious(0.02) possibly_damaging(0.513) TCGA-FS-A1ZC-06 18 45566762 45566762 G A ZBTB7C Silent p.A239A 0.43 TCGA-FS-A1ZC-06 18 47369720 47369720 G A MYO5B Missense_Mutation p.P1501L 0.18 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 18 48331632 48331632 G A MRO Silent p.I121I 0.48 TCGA-FS-A1ZC-06 18 50705338 50705338 A G DCC Silent p.R475R 0.40 TCGA-FS-A1ZC-06 18 55230187 55230187 T C FECH Silent p.R214R 0.33 TCGA-FS-A1ZC-06 18 56148983 56148983 C T ALPK2 3'UTR 0.28 TCGA-FS-A1ZC-06 18 59483031 59483031 C T RNF152 3'UTR 0.30 TCGA-FS-A1ZC-06 18 61060688 61060688 C T VPS4B Nonsense_Mutation p.W396* 0.21 TCGA-FS-A1ZC-06 18 61304983 61304983 G A SERPINB4 Silent p.I381I 0.40 TCGA-FS-A1ZC-06 18 61570498 61570498 A C SERPINB2 Missense_Mutation p.T403P 0.38 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZC-06 18 72998871 72998871 G A TSHZ1 Silent p.E458E 0.21 TCGA-FS-A1ZC-06 18 736817 736817 C T YES1 Missense_Mutation p.A428T 0.16 deleterious(0.03) benign(0.279) TCGA-FS-A1ZC-06 18 74154915 74154915 G A ZNF516 Silent p.T32T 0.13 TCGA-FS-A1ZC-06 18 77659241 77659241 G A KCNG2 Missense_Mutation p.G276R 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A1ZC-06 19 10557018 10557018 C T PDE4A Missense_Mutation p.R149C 0.35 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZC-06 19 11132565 11132565 C T SMARCA4 Silent p.F927F 0.55 TCGA-FS-A1ZC-06 19 11215952 11215952 C T LDLR Missense_Mutation p.R124W 0.19 deleterious(0.02) possibly_damaging(0.818) TCGA-FS-A1ZC-06 19 11289134 11289134 G A KANK2 Silent p.S477S 0.57 TCGA-FS-A1ZC-06 19 12830100 12830100 G A TNPO2 Silent p.F50F 0.42 TCGA-FS-A1ZC-06 19 15586595 15586595 G A PGLYRP2 Missense_Mutation p.L296F 0.48 deleterious(0.02) benign(0.325) TCGA-FS-A1ZC-06 19 15730513 15730513 C T CYP4F8 RNA 0.22 TCGA-FS-A1ZC-06 19 15794391 15794391 C T CYP4F12 Silent p.L246L 0.46 TCGA-FS-A1ZC-06 19 16344396 16344396 C T AP1M1 Silent p.F392F 0.16 TCGA-FS-A1ZC-06 19 16872877 16872877 G A NWD1 Silent p.G687G 0.20 TCGA-FS-A1ZC-06 19 17374903 17374903 G A USHBP1 Silent p.S37S 0.12 TCGA-FS-A1ZC-06 19 19653450 19653450 G A CILP2 Missense_Mutation p.D287N 0.39 tolerated(0.32) benign(0.002) TCGA-FS-A1ZC-06 19 21133053 21133053 C T ZNF85 Missense_Mutation p.S578F 0.23 tolerated(0.54) benign(0.002) TCGA-FS-A1ZC-06 19 22155094 22155094 C T ZNF208 Silent p.E914E 0.26 TCGA-FS-A1ZC-06 19 22156615 22156615 A G ZNF208 Silent p.S407S 0.12 TCGA-FS-A1ZC-06 19 23329589 23329589 C T ZNF730 3'UTR 0.28 TCGA-FS-A1ZC-06 19 24270106 24270106 T C ZNF254 5'UTR 0.50 TCGA-FS-A1ZC-06 19 31768016 31768016 G A TSHZ3 Nonsense_Mutation p.Q895* 0.25 TCGA-FS-A1ZC-06 19 35435022 35435022 C T ZNF30 Silent p.A385A 0.23 TCGA-FS-A1ZC-06 19 3547298 3547298 T C MFSD12 Missense_Mutation p.K332R 0.37 possibly_damaging(0.612) TCGA-FS-A1ZC-06 19 3547300 3547300 C T MFSD12 Missense_Mutation p.M331I 0.39 benign(0.06) TCGA-FS-A1ZC-06 19 38893805 38893805 G A FAM98C Silent p.V4V 0.17 TCGA-FS-A1ZC-06 19 39229232 39229232 G A CAPN12 Silent p.S262S 0.20 TCGA-FS-A1ZC-06 19 40363278 40363278 C T FCGBP Missense_Mutation p.G4931D 0.18 benign(0.267) TCGA-FS-A1ZC-06 19 4117551 4117551 A C MAP2K2 Missense_Mutation p.F57V 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZC-06 19 41245275 41245275 C T ITPKC Missense_Mutation p.S621F 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 19 42311148 42311148 G A CEACAM3 Intron 0.15 TCGA-FS-A1ZC-06 19 44057650 44057650 G A XRCC1 Silent p.T168T 0.40 TCGA-FS-A1ZC-06 19 44590208 44590208 C T ZNF284 Missense_Mutation p.H193Y 0.21 deleterious(0.02) benign(0.379) TCGA-FS-A1ZC-06 19 44932656 44932656 G A ZNF229 Missense_Mutation p.P767L 0.12 tolerated(0.24) probably_damaging(1) TCGA-FS-A1ZC-06 19 4511419 4511419 C T PLIN4 Silent p.L837L 0.20 TCGA-FS-A1ZC-06 19 4538269 4538269 G A LRG1 Silent p.L243L 0.36 TCGA-FS-A1ZC-06 19 45997557 45997557 C T RTN2 Silent p.S227S 0.28 TCGA-FS-A1ZC-06 19 47549939 47549939 G A TMEM160 Silent p.F71F 0.45 TCGA-FS-A1ZC-06 19 48229100 48229100 C T EHD2 Silent p.F178F 0.25 TCGA-FS-A1ZC-06 19 48543970 48543970 G C CABP5 Missense_Mutation p.R44G 0.26 tolerated(0.65) benign(0.046) TCGA-FS-A1ZC-06 19 49132208 49132208 C G SPHK2 Silent p.A381A 0.45 TCGA-FS-A1ZC-06 19 49183688 49183688 C T RN7SL345P 5'Flank 0.21 TCGA-FS-A1ZC-06 19 50303356 50303356 C T AP2A1 Silent p.I468I 0.17 TCGA-FS-A1ZC-06 19 51165652 51165652 G A SHANK1 Missense_Mutation p.S2019F 0.43 unknown(0) TCGA-FS-A1ZC-06 19 51480889 51480889 C T KLK7 Missense_Mutation p.G222E 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 19 51483560 51483560 G A KLK7 Silent p.S135S 0.14 TCGA-FS-A1ZC-06 19 51981924 51981924 C T CEACAM18 Silent p.L71L 0.38 TCGA-FS-A1ZC-06 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.49 tolerated(0.19) benign(0.004) TCGA-FS-A1ZC-06 19 53086285 53086285 C T ZNF701 Missense_Mutation p.P391S 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1ZC-06 19 53472618 53472618 C T ZNF702P RNA 0.27 TCGA-FS-A1ZC-06 19 54515427 54515427 G A CACNG6 Missense_Mutation p.G256E 0.21 tolerated(0.08) benign(0.02) TCGA-FS-A1ZC-06 19 54647829 54647829 C T CNOT3 Missense_Mutation p.P116S 0.24 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 19 55494253 55494253 C T NLRP2 Missense_Mutation p.S396L 0.16 deleterious(0) possibly_damaging(0.67) TCGA-FS-A1ZC-06 19 5590305 5590305 G A SAFB2 Silent p.L837L 0.20 TCGA-FS-A1ZC-06 19 56413465 56413465 C T NLRP13 Missense_Mutation p.D909N 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZC-06 19 56419195 56419195 C T NLRP13 Missense_Mutation p.A804T 0.51 tolerated(1) benign(0.002) TCGA-FS-A1ZC-06 19 56424406 56424406 C T NLRP13 Silent p.Q259Q 0.49 TCGA-FS-A1ZC-06 19 56466832 56466832 G A NLRP8 Missense_Mutation p.G470S 0.17 tolerated(0.51) benign(0.015) TCGA-FS-A1ZC-06 19 56539845 56539845 C T NLRP5 Missense_Mutation p.S749F 0.40 tolerated(0.76) benign(0) TCGA-FS-A1ZC-06 19 57175274 57175274 G A ZNF835 Silent p.S431S 0.16 TCGA-FS-A1ZC-06 19 57326785 57326785 T C PEG3 Missense_Mutation p.S1009G 0.16 tolerated(0.08) benign(0.348) TCGA-FS-A1ZC-06 19 57327995 57327995 C T PEG3 Silent p.G605G 0.61 TCGA-FS-A1ZC-06 19 57746709 57746709 C T AURKC Missense_Mutation p.A285V 0.45 tolerated(0.28) benign(0.02) TCGA-FS-A1ZC-06 19 57746710 57746710 C T AURKC Silent p.A285A 0.44 TCGA-FS-A1ZC-06 19 5832366 5832366 A T FUT6 Missense_Mutation p.F71L 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 19 6711045 6711045 G A C3 Nonsense_Mutation p.R478* 0.15 TCGA-FS-A1ZC-06 19 6714368 6714368 G A C3 Silent p.L198L 0.37 TCGA-FS-A1ZC-06 19 6733304 6733304 G A GPR108 Silent p.I244I 0.20 TCGA-FS-A1ZC-06 19 6981226 6981226 C T EMR4P Intron 0.17 TCGA-FS-A1ZC-06 19 7152745 7152745 G A INSR Silent p.F741F 0.19 TCGA-FS-A1ZC-06 19 7616319 7616319 C T PNPLA6 Silent p.F761F 0.25 TCGA-FS-A1ZC-06 19 830878 830878 G A AZU1 Silent p.E177E 0.39 TCGA-FS-A1ZC-06 19 8495718 8495718 C T MARCH2 Silent p.I183I 0.50 TCGA-FS-A1ZC-06 19 9006363 9006363 A G MUC16 Missense_Mutation p.C13219R 0.15 probably_damaging(0.999) TCGA-FS-A1ZC-06 19 9060067 9060067 G A MUC16 Missense_Mutation p.P9127S 0.24 unknown(0) TCGA-FS-A1ZC-06 19 9060965 9060965 C T MUC16 Silent p.G8827G 0.23 TCGA-FS-A1ZC-06 19 9066420 9066420 G A MUC16 Missense_Mutation p.S7009F 0.42 unknown(0) TCGA-FS-A1ZC-06 19 9075484 9075484 C T MUC16 Missense_Mutation p.E3988K 0.52 unknown(0) TCGA-FS-A1ZC-06 19 9088939 9088939 G A MUC16 Missense_Mutation p.S959F 0.43 unknown(0) TCGA-FS-A1ZC-06 1 101705413 101705413 C T S1PR1 Silent p.F291F 0.29 TCGA-FS-A1ZC-06 1 109553733 109553733 G A WDR47 Missense_Mutation p.S319F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 11024187 11024187 G C C1orf127 Missense_Mutation p.Q172E 0.17 deleterious(0) possibly_damaging(0.764) TCGA-FS-A1ZC-06 1 110300637 110300637 C T EPS8L3 Missense_Mutation p.G255E 0.28 tolerated(0.57) benign(0.039) TCGA-FS-A1ZC-06 1 111857955 111857955 C T CHIA Silent p.F126F 0.64 TCGA-FS-A1ZC-06 1 112998608 112998608 C T CTTNBP2NL Missense_Mutation p.S165F 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-FS-A1ZC-06 1 113062964 113062964 A G WNT2B Missense_Mutation p.I337V 0.24 tolerated(0.85) benign(0.007) TCGA-FS-A1ZC-06 1 114196578 114196578 G A MAGI3 Missense_Mutation p.R856Q 0.31 deleterious(0) benign(0.37) TCGA-FS-A1ZC-06 1 11584081 11584081 C T PTCHD2 Silent p.P815P 0.19 TCGA-FS-A1ZC-06 1 119575949 119575949 G A WARS2 Missense_Mutation p.P223L 0.23 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZC-06 1 12835722 12835722 G A PRAMEF12 Silent p.V108V 0.63 TCGA-FS-A1ZC-06 1 12954608 12954608 G A PRAMEF10 Silent p.A225A 0.30 TCGA-FS-A1ZC-06 1 1396196 1396196 C T ATAD3C Silent p.D293D 0.62 TCGA-FS-A1ZC-06 1 150318499 150318499 G A PRPF3 Missense_Mutation p.R549Q 0.72 tolerated(0.07) probably_damaging(0.941) TCGA-FS-A1ZC-06 1 150525646 150525646 G A ADAMTSL4 Silent p.Q117Q 0.18 TCGA-FS-A1ZC-06 1 151020842 151020842 C G C1orf56 Missense_Mutation p.S173R 0.24 tolerated(0.13) possibly_damaging(0.883) TCGA-FS-A1ZC-06 1 151754010 151754010 G A TDRKH Missense_Mutation p.P60S 0.21 deleterious(0) probably_damaging(0.951) TCGA-FS-A1ZC-06 1 152127240 152127240 C T RPTN Missense_Mutation p.E779K 0.17 tolerated(0.1) benign(0.027) TCGA-FS-A1ZC-06 1 152280873 152280873 G A FLG Silent p.H2163H 0.13 TCGA-FS-A1ZC-06 1 154173059 154173059 C T C1orf189 Missense_Mutation p.R27Q 0.19 tolerated(1) benign(0.007) TCGA-FS-A1ZC-06 1 155005649 155005649 G A DCST2 Silent p.S120S 0.37 TCGA-FS-A1ZC-06 1 157514161 157514161 G A FCRL5 Silent p.F245F 0.19 TCGA-FS-A1ZC-06 1 157551345 157551345 G A FCRL4 Missense_Mutation p.H409Y 0.14 tolerated(1) benign(0) TCGA-FS-A1ZC-06 1 158435715 158435715 C T OR10K1 Missense_Mutation p.R122C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 158590251 158590251 C T SPTA1 Silent p.E2042E 0.16 TCGA-FS-A1ZC-06 1 158687515 158687515 G A OR6K3 Missense_Mutation p.R131C 0.17 deleterious(0) benign(0.119) TCGA-FS-A1ZC-06 1 158812064 158812064 G A MNDA Missense_Mutation p.E41K 0.71 deleterious(0.01) possibly_damaging(0.572) TCGA-FS-A1ZC-06 1 159283492 159283492 C T OR10J3 Missense_Mutation p.G320S 0.13 tolerated_low_confidence(0.3) benign(0.005) TCGA-FS-A1ZC-06 1 161012645 161012645 C T USF1 Silent p.E12E 0.16 TCGA-FS-A1ZC-06 1 161561178 161561178 C T FCGR2C 5'Flank 0.13 TCGA-FS-A1ZC-06 1 161600958 161600958 G A FCGR3B Missense_Mutation p.P12L 0.11 tolerated_low_confidence(0.14) benign(0) TCGA-FS-A1ZC-06 1 161600986 161600986 C T FCGR3B Missense_Mutation p.G3R 0.60 deleterious_low_confidence(0.05) benign(0.209) TCGA-FS-A1ZC-06 1 161954738 161954738 C T OLFML2B Missense_Mutation p.G503R 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 162346550 162346550 C T C1orf111 Missense_Mutation p.G11R 0.10 tolerated(0.09) possibly_damaging(0.449) TCGA-FS-A1ZC-06 1 16263664 16263664 C T SPEN Missense_Mutation p.P3345S 0.22 benign(0.006) TCGA-FS-A1ZC-06 1 16263665 16263665 C T SPEN Missense_Mutation p.P3345L 0.23 benign(0.024) TCGA-FS-A1ZC-06 1 166985495 166985495 T G MAEL Missense_Mutation p.C294W 0.16 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 1 167791329 167791329 C T ADCY10 Missense_Mutation p.E1407K 0.11 deleterious(0.03) benign(0.127) TCGA-FS-A1ZC-06 1 171162636 171162636 G A FMO2 Missense_Mutation p.D99N 0.21 tolerated(0.45) benign(0.052) TCGA-FS-A1ZC-06 1 171621471 171621471 G A MYOC Missense_Mutation p.S94F 0.73 tolerated(0.18) benign(0.193) TCGA-FS-A1ZC-06 1 172437642 172437642 G A C1orf105 Missense_Mutation p.G154R 0.70 tolerated(0.2) probably_damaging(0.98) TCGA-FS-A1ZC-06 1 175052934 175052934 C T TNN Missense_Mutation p.S366F 0.29 deleterious(0) probably_damaging(0.965) TCGA-FS-A1ZC-06 1 175086184 175086184 C T TNN Silent p.T743T 0.18 TCGA-FS-A1ZC-06 1 176679151 176679151 G A PAPPA2 Missense_Mutation p.D1164N 0.19 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 1 176998790 176998790 C T ASTN1 Missense_Mutation p.R367K 0.10 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FS-A1ZC-06 1 17723616 17723616 G A PADI6 RNA 0.27 TCGA-FS-A1ZC-06 1 179533850 179533850 G A NPHS2 Missense_Mutation p.P118L 0.13 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 1 179587780 179587780 G A TDRD5 Missense_Mutation p.G293E 0.19 deleterious(0.03) probably_damaging(0.911) TCGA-FS-A1ZC-06 1 181705457 181705457 G A CACNA1E Silent p.E1103E 0.56 TCGA-FS-A1ZC-06 1 183111940 183111940 G C LAMC1 3'UTR 0.74 TCGA-FS-A1ZC-06 1 184663459 184663459 G A EDEM3 Missense_Mutation p.S846L 0.80 tolerated_low_confidence(0.33) benign(0.046) TCGA-FS-A1ZC-06 1 196395118 196395118 C T KCNT2 Missense_Mutation p.D329N 0.68 tolerated(0.06) benign(0.216) TCGA-FS-A1ZC-06 1 197074116 197074116 G A ASPM Missense_Mutation p.S1422L 0.16 tolerated(0.06) possibly_damaging(0.792) TCGA-FS-A1ZC-06 1 198671599 198671599 C T PTPRC Missense_Mutation p.H175Y 0.16 tolerated(0.76) benign(0.009) TCGA-FS-A1ZC-06 1 200017898 200017898 C T NR5A2 Silent p.F354F 0.15 TCGA-FS-A1ZC-06 1 200017899 200017899 T C NR5A2 Missense_Mutation p.S355P 0.16 deleterious(0.03) possibly_damaging(0.832) TCGA-FS-A1ZC-06 1 200869277 200869277 G A C1orf106 Missense_Mutation p.E76K 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 201030461 201030461 G A CACNA1S Silent p.F1063F 0.61 TCGA-FS-A1ZC-06 1 203152902 203152902 G A CHI3L1 Missense_Mutation p.S111F 0.14 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZC-06 1 203188902 203188902 G A CHIT1 Missense_Mutation p.R269C 0.21 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 205041641 205041641 G A CNTN2 Nonsense_Mutation p.W921* 0.14 TCGA-FS-A1ZC-06 1 207086345 207086345 G A FAIM3 Missense_Mutation p.P139L 0.20 deleterious(0) probably_damaging(0.953) TCGA-FS-A1ZC-06 1 207696956 207696956 G A CR1 Missense_Mutation p.R163K 0.19 tolerated(1) benign(0.006) TCGA-FS-A1ZC-06 1 207751181 207751181 C T CR1 Silent p.A1523A 0.18 TCGA-FS-A1ZC-06 1 209933534 209933534 G A TRAF3IP3 Silent p.R50R 0.16 TCGA-FS-A1ZC-06 1 215848206 215848206 G A USH2A Silent p.I4349I 0.78 TCGA-FS-A1ZC-06 1 215990524 215990524 C T USH2A Missense_Mutation p.D3129N 0.72 benign(0.02) TCGA-FS-A1ZC-06 1 216692542 216692542 C T ESRRG Missense_Mutation p.E374K 0.83 tolerated(0.19) probably_damaging(0.998) TCGA-FS-A1ZC-06 1 220298681 220298681 G A IARS2 Silent p.E581E 0.12 TCGA-FS-A1ZC-06 1 222700379 222700379 G A HHIPL2 Silent p.F579F 0.18 TCGA-FS-A1ZC-06 1 223989873 223989873 C T TP53BP2 Silent p.P390P 0.25 TCGA-FS-A1ZC-06 1 228111920 228111920 G A WNT9A Silent p.F178F 0.18 TCGA-FS-A1ZC-06 1 228469851 228469851 G A OBSCN Silent p.G3234G 0.11 TCGA-FS-A1ZC-06 1 228469852 228469852 G A OBSCN Missense_Mutation p.E3235K 0.12 probably_damaging(0.998) TCGA-FS-A1ZC-06 1 240371813 240371813 C T FMN2 Missense_Mutation p.P1234L 0.63 benign(0.013) TCGA-FS-A1ZC-06 1 248112650 248112650 A C OR2L8 Missense_Mutation p.H164P 0.07 deleterious(0.02) benign(0.134) TCGA-FS-A1ZC-06 1 248224474 248224474 A C OR2L3 Missense_Mutation p.H164P 0.10 deleterious(0.02) benign(0.049) TCGA-FS-A1ZC-06 1 248308911 248308911 G A OR2M5 Missense_Mutation p.M154I 0.77 tolerated(0.45) benign(0) TCGA-FS-A1ZC-06 1 248309245 248309245 C T OR2M5 Missense_Mutation p.R266C 0.16 deleterious(0.03) benign(0.032) TCGA-FS-A1ZC-06 1 248366997 248366997 C T OR2M3 Missense_Mutation p.P210S 0.18 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZC-06 1 248436624 248436624 G A OR2T33 Missense_Mutation p.P165S 0.86 tolerated(0.24) benign(0.158) TCGA-FS-A1ZC-06 1 248616254 248616254 G A OR2T2 Missense_Mutation p.M52I 0.09 tolerated(0.56) benign(0) TCGA-FS-A1ZC-06 1 248813900 248813900 C T OR2T27 Missense_Mutation p.G96R 0.11 deleterious(0) possibly_damaging(0.821) TCGA-FS-A1ZC-06 1 248813908 248813908 G A OR2T27 Missense_Mutation p.S93F 0.48 deleterious(0.01) probably_damaging(0.952) TCGA-FS-A1ZC-06 1 248814140 248814140 C T OR2T27 Missense_Mutation p.G16S 0.10 tolerated(0.05) possibly_damaging(0.664) TCGA-FS-A1ZC-06 1 28282464 28282464 C T SMPDL3B Silent p.V292V 0.22 TCGA-FS-A1ZC-06 1 32687989 32687989 C T EIF3I 5'UTR 0.68 TCGA-FS-A1ZC-06 1 32834069 32834069 G A BSDC1 Silent p.S430S 0.22 TCGA-FS-A1ZC-06 1 37271919 37271919 C T GRIK3 Silent p.K700K 0.48 TCGA-FS-A1ZC-06 1 38197104 38197104 C T EPHA10 Missense_Mutation p.E548K 0.30 deleterious(0.01) possibly_damaging(0.663) TCGA-FS-A1ZC-06 1 42628612 42628612 C T GUCA2A Missense_Mutation p.E105K 0.59 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 1 45813304 45813304 G A TESK2 Nonsense_Mutation p.R229* 0.21 TCGA-FS-A1ZC-06 1 45813305 45813305 G C TESK2 Silent p.L228L 0.22 TCGA-FS-A1ZC-06 1 46745898 46745898 C T LRRC41 Silent p.E662E 0.23 TCGA-FS-A1ZC-06 1 47564916 47564916 G A CYP4Z1 Missense_Mutation p.E343K 0.56 deleterious(0) possibly_damaging(0.874) TCGA-FS-A1ZC-06 1 54649919 54649919 A G CYB5RL Missense_Mutation p.M152T 0.41 deleterious(0) possibly_damaging(0.897) TCGA-FS-A1ZC-06 1 55152110 55152110 C T MROH7 Silent p.F900F 0.60 TCGA-FS-A1ZC-06 1 55518010 55518010 G A PCSK9 Missense_Mutation p.E195K 0.55 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 57351831 57351831 G A C8A Missense_Mutation p.E363K 0.19 tolerated(0.46) benign(0.013) TCGA-FS-A1ZC-06 1 6181214 6181214 C T CHD5 Silent p.R1621R 0.37 TCGA-FS-A1ZC-06 1 6640876 6640876 C T ZBTB48 Silent p.F69F 0.37 TCGA-FS-A1ZC-06 1 6738476 6738476 C T DNAJC11 Missense_Mutation p.G85E 0.21 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 1 70478688 70478688 C T LRRC7 Missense_Mutation p.S351F 0.52 tolerated(0.88) probably_damaging(0.941) TCGA-FS-A1ZC-06 1 75037406 75037406 C T C1orf173 Missense_Mutation p.E1330K 0.44 tolerated(0.94) possibly_damaging(0.801) TCGA-FS-A1ZC-06 1 78399027 78399027 G A NEXN Missense_Mutation p.G372R 0.20 tolerated(0.22) benign(0.167) TCGA-FS-A1ZC-06 1 85624434 85624434 C G SYDE2 Nonstop_Mutation p.*1195Sext*2 0.58 TCGA-FS-A1ZC-06 1 85634895 85634895 A G SYDE2 Silent p.D895D 0.29 TCGA-FS-A1ZC-06 1 86591268 86591268 C T COL24A1 Missense_Mutation p.E251K 0.33 tolerated(0.69) benign(0.002) TCGA-FS-A1ZC-06 1 94544152 94544152 C T ABCA4 Missense_Mutation p.M450I 0.28 tolerated(0.06) benign(0.017) TCGA-FS-A1ZC-06 20 1551704 1551704 G A SIRPB1 Silent p.F277F 0.34 TCGA-FS-A1ZC-06 20 17594822 17594822 G A RRBP1 3'UTR 0.20 TCGA-FS-A1ZC-06 20 20341038 20341038 G A C20orf26 Nonsense_Mutation p.W1233* 0.51 TCGA-FS-A1ZC-06 20 23066300 23066300 C T CD93 Missense_Mutation p.G177D 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 20 30436336 30436336 G A FOXS1 5'Flank 0.32 TCGA-FS-A1ZC-06 20 33033181 33033181 C T ITCH Missense_Mutation p.S393F 0.23 tolerated(0.29) benign(0.14) TCGA-FS-A1ZC-06 20 33589068 33589068 G A MYH7B Silent p.E1874E 0.22 TCGA-FS-A1ZC-06 20 35075157 35075157 G A DLGAP4 Missense_Mutation p.E489K 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZC-06 20 36500456 36500456 C T CTNNBL1 3'UTR 0.46 TCGA-FS-A1ZC-06 20 37357063 37357063 C T SLC32A1 Silent p.F453F 0.31 TCGA-FS-A1ZC-06 20 40877449 40877449 C T PTPRT Silent p.Q730Q 0.40 TCGA-FS-A1ZC-06 20 44505617 44505617 T C ZSWIM3 Silent p.T140T 0.49 TCGA-FS-A1ZC-06 20 44664101 44664101 C T SLC12A5 Missense_Mutation p.T92I 0.43 deleterious(0) probably_damaging(0.955) TCGA-FS-A1ZC-06 20 45195020 45195020 G A SLC13A3 Silent p.L448L 0.17 TCGA-FS-A1ZC-06 20 47267558 47267558 G A PREX1 Silent p.F897F 0.14 TCGA-FS-A1ZC-06 20 47292788 47292788 C T PREX1 Silent p.L536L 0.24 TCGA-FS-A1ZC-06 20 47626919 47626919 C T ARFGEF2 Silent p.F1245F 0.48 TCGA-FS-A1ZC-06 20 49224959 49224959 C T FAM65C Missense_Mutation p.G304D 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 20 52591936 52591936 C T BCAS1 Missense_Mutation p.E392K 0.47 tolerated(0.07) benign(0.42) TCGA-FS-A1ZC-06 20 55918436 55918436 C T SPO11 Nonsense_Mutation p.Q371* 0.27 TCGA-FS-A1ZC-06 20 57769720 57769720 C T ZNF831 Missense_Mutation p.L1216F 0.49 tolerated(0.47) benign(0.38) TCGA-FS-A1ZC-06 20 61143423 61143423 C T C20orf166 5'Flank 0.41 TCGA-FS-A1ZC-06 20 61869824 61869824 T G BIRC7 Missense_Mutation p.S176A 0.40 tolerated(0.11) benign(0.007) TCGA-FS-A1ZC-06 20 62121832 62121832 C T EEF1A2 Silent p.Q343Q 0.25 TCGA-FS-A1ZC-06 20 9498814 9498814 G A LAMP5 Missense_Mutation p.M201I 0.41 tolerated(0.11) benign(0.006) TCGA-FS-A1ZC-06 21 10921986 10921986 C T TPTE Missense_Mutation p.G346E 0.29 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZC-06 21 10951354 10951354 G T TPTE Missense_Mutation p.L120I 0.10 tolerated(0.54) benign(0.002) TCGA-FS-A1ZC-06 21 15561462 15561462 T C LIPI Missense_Mutation p.I130V 0.58 tolerated(0.31) benign(0.254) TCGA-FS-A1ZC-06 21 32253710 32253710 G A KRTAP11-1 Missense_Mutation p.S45F 0.88 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZC-06 21 39671908 39671908 C T KCNJ15 Missense_Mutation p.S242F 0.28 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZC-06 21 40547476 40547476 G A PSMG1 3'UTR 0.39 TCGA-FS-A1ZC-06 21 42839718 42839718 T C TMPRSS2 Silent p.R507R 0.88 TCGA-FS-A1ZC-06 21 46032136 46032136 C T KRTAP10-8 Missense_Mutation p.S40F 0.33 deleterious(0) probably_damaging(0.951) TCGA-FS-A1ZC-06 22 17073137 17073137 C T CCT8L2 Missense_Mutation p.G102R 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 22 19220999 19220999 C T CLTCL1 Silent p.L438L 0.28 TCGA-FS-A1ZC-06 22 22663112 22663112 C T BMS1P20 RNA 0.31 TCGA-FS-A1ZC-06 22 22707705 22707705 G A IGLV5-48 Missense_Mutation p.G98E 0.25 deleterious(0.02) possibly_damaging(0.632) TCGA-FS-A1ZC-06 22 23248698 23248698 A G IGLC3 Missense_Mutation p.N63S 0.79 benign(0.014) TCGA-FS-A1ZC-06 22 26110410 26110410 C T ADRBK2 Silent p.F509F 0.96 TCGA-FS-A1ZC-06 22 29885294 29885294 G A NEFH Silent p.K555K 0.86 TCGA-FS-A1ZC-06 22 36960549 36960549 C T CACNG2 Missense_Mutation p.S274N 0.28 tolerated(0.06) benign(0.011) TCGA-FS-A1ZC-06 22 37271732 37271732 C T NCF4 Missense_Mutation p.S222F 0.89 deleterious(0) possibly_damaging(0.804) TCGA-FS-A1ZC-06 22 39824104 39824104 C T TAB1 Missense_Mutation p.S408F 0.93 deleterious(0.04) probably_damaging(0.998) TCGA-FS-A1ZC-06 22 42266928 42266928 C T SREBF2 Silent p.S252S 0.87 TCGA-FS-A1ZC-06 22 42383746 42383746 C T SEPT3 Silent p.I178I 0.98 TCGA-FS-A1ZC-06 22 46134706 46134706 G A ATXN10 Silent p.L330L 0.21 TCGA-FS-A1ZC-06 22 46807511 46807511 G T CELSR1 Missense_Mutation p.T1586N 0.91 deleterious(0.01) possibly_damaging(0.752) TCGA-FS-A1ZC-06 22 49103654 49103654 A C FAM19A5 Missense_Mutation p.T130P 0.27 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZC-06 2 107049690 107049690 C T RGPD3 Missense_Mutation p.E753K 0.12 deleterious(0) benign(0.027) TCGA-FS-A1ZC-06 2 1079206 1079206 G A SNTG2 Silent p.T25T 0.18 TCGA-FS-A1ZC-06 2 108487866 108487866 G A RGPD4 Missense_Mutation p.D1136N 0.94 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZC-06 2 108626705 108626705 C T SLC5A7 Silent p.I377I 0.25 TCGA-FS-A1ZC-06 2 11367399 11367399 G A ROCK2 Silent p.F283F 0.19 TCGA-FS-A1ZC-06 2 120383232 120383232 A T PCDP1 Missense_Mutation p.K495M 0.19 deleterious(0.01) possibly_damaging(0.707) TCGA-FS-A1ZC-06 2 120383233 120383233 G A PCDP1 Silent p.K495K 0.19 TCGA-FS-A1ZC-06 2 130832326 130832326 C T POTEF Missense_Mutation p.E907K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.871) TCGA-FS-A1ZC-06 2 132266141 132266141 C T AC093838.4 RNA 0.61 TCGA-FS-A1ZC-06 2 133540896 133540896 C T NCKAP5 Missense_Mutation p.S1163N 0.26 deleterious(0.01) probably_damaging(0.933) TCGA-FS-A1ZC-06 2 141092026 141092026 G A LRP1B Silent p.P4073P 0.45 TCGA-FS-A1ZC-06 2 141214161 141214161 G A LRP1B Missense_Mutation p.L3276F 0.38 possibly_damaging(0.587) TCGA-FS-A1ZC-06 2 141243011 141243011 C G LRP1B Missense_Mutation p.R3109T 0.31 benign(0.227) TCGA-FS-A1ZC-06 2 1440129 1440129 G A TPO Missense_Mutation p.R152K 0.33 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 2 152515621 152515621 G A NEB Silent p.P2011P 0.35 TCGA-FS-A1ZC-06 2 152522010 152522010 C T NEB Missense_Mutation p.G1692D 0.14 probably_damaging(0.999) TCGA-FS-A1ZC-06 2 153476148 153476148 C T FMNL2 Missense_Mutation p.P585S 0.32 possibly_damaging(0.803) TCGA-FS-A1ZC-06 2 15769735 15769735 C G DDX1 Missense_Mutation p.H629D 0.29 deleterious(0) probably_damaging(0.934) TCGA-FS-A1ZC-06 2 163128755 163128755 G A IFIH1 Missense_Mutation p.P866L 0.63 tolerated(0.11) benign(0.104) TCGA-FS-A1ZC-06 2 163292069 163292069 G A KCNH7 Silent p.L531L 0.21 TCGA-FS-A1ZC-06 2 165551195 165551195 C T COBLL1 Missense_Mutation p.E941K 0.36 deleterious(0) possibly_damaging(0.818) TCGA-FS-A1ZC-06 2 1677425 1677425 G A PXDN Silent p.F336F 0.25 TCGA-FS-A1ZC-06 2 171356173 171356173 C T MYO3B Silent p.Y1048Y 0.20 TCGA-FS-A1ZC-06 2 172306462 172306462 C T DCAF17 Missense_Mutation p.R178W 0.18 deleterious(0) possibly_damaging(0.685) TCGA-FS-A1ZC-06 2 17698255 17698255 A T RAD51AP2 Silent p.T476T 0.22 TCGA-FS-A1ZC-06 2 179423192 179423192 G A TTN Silent p.T28998T 0.29 TCGA-FS-A1ZC-06 2 179473102 179473102 C T TTN Missense_Mutation p.G17503D 0.60 TCGA-FS-A1ZC-06 2 179489255 179489255 C T TTN Missense_Mutation p.D14918N 0.30 TCGA-FS-A1ZC-06 2 179536884 179536884 C T TTN Missense_Mutation p.E11681K 0.39 TCGA-FS-A1ZC-06 2 179547573 179547573 G A TTN Missense_Mutation p.S10982L 0.55 TCGA-FS-A1ZC-06 2 179569401 179569401 G A TTN Missense_Mutation p.S9933L 0.37 TCGA-FS-A1ZC-06 2 179577460 179577460 C T TTN Missense_Mutation p.G9098S 0.61 TCGA-FS-A1ZC-06 2 179577980 179577980 G A TTN Missense_Mutation p.H8961Y 0.50 TCGA-FS-A1ZC-06 2 179593783 179593783 C T TTN Missense_Mutation p.D6328N 0.23 TCGA-FS-A1ZC-06 2 179595331 179595331 C T TTN Missense_Mutation p.E5977K 0.58 TCGA-FS-A1ZC-06 2 179599320 179599320 G A TTN Silent p.F5077F 0.63 TCGA-FS-A1ZC-06 2 179611958 179611958 C T TTN Intron 0.60 TCGA-FS-A1ZC-06 2 179614967 179614967 C T TTN Intron 0.32 TCGA-FS-A1ZC-06 2 179615426 179615426 T C TTN Intron 0.29 TCGA-FS-A1ZC-06 2 179702444 179702444 C T CCDC141 Missense_Mutation p.G1168S 0.52 tolerated(0.38) benign(0.016) TCGA-FS-A1ZC-06 2 179742822 179742822 G A CCDC141 Missense_Mutation p.P590S 0.70 tolerated(0.46) benign(0.02) TCGA-FS-A1ZC-06 2 198001381 198001381 G A ANKRD44 Missense_Mutation p.R66C 0.63 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZC-06 2 200188594 200188594 G C SATB2 Missense_Mutation p.Q492E 0.33 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZC-06 2 201284162 201284162 C T SPATS2L Missense_Mutation p.R130C 0.12 tolerated(0.2) probably_damaging(1) TCGA-FS-A1ZC-06 2 201355076 201355076 G A KCTD18 Missense_Mutation p.P343L 0.30 tolerated_low_confidence(0.1) benign(0.002) TCGA-FS-A1ZC-06 2 202211358 202211358 T A ALS2CR12 Missense_Mutation p.N92I 0.28 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZC-06 2 207509016 207509016 C T AC010731.4 RNA 0.43 TCGA-FS-A1ZC-06 2 207509017 207509017 C T AC010731.4 RNA 0.39 TCGA-FS-A1ZC-06 2 212543876 212543876 G A ERBB4 Missense_Mutation p.S508F 0.59 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZC-06 2 215928822 215928822 C T ABCA12 Missense_Mutation p.R95K 0.30 tolerated(0.3) benign(0.115) TCGA-FS-A1ZC-06 2 218940293 218940293 G A RUFY4 Missense_Mutation p.G380R 0.23 tolerated(0.11) possibly_damaging(0.759) TCGA-FS-A1ZC-06 2 219000488 219000488 C T CXCR2 Missense_Mutation p.R322C 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZC-06 2 219500990 219500990 C A PLCD4 Missense_Mutation p.T686K 0.26 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZC-06 2 219746919 219746919 C T WNT10A Silent p.P50P 0.27 TCGA-FS-A1ZC-06 2 228004933 228004933 G A COL4A4 Missense_Mutation p.P46S 0.22 possibly_damaging(0.843) TCGA-FS-A1ZC-06 2 233899345 233899345 C T NEU2 Nonsense_Mutation p.R241* 0.63 TCGA-FS-A1ZC-06 2 234356786 234356786 C T DGKD Silent p.I491I 0.36 TCGA-FS-A1ZC-06 2 234368862 234368862 C T DGKD Missense_Mutation p.S951F 0.17 deleterious(0) benign(0.114) TCGA-FS-A1ZC-06 2 234368863 234368863 C T DGKD Silent p.S951S 0.17 TCGA-FS-A1ZC-06 2 234669410 234669410 C T UGT1A8 Intron 0.29 TCGA-FS-A1ZC-06 2 234681160 234681160 G A UGT1A4 Silent p.G520G 0.27 TCGA-FS-A1ZC-06 2 242105766 242105766 C T PPP1R7 Silent p.T243T 0.17 TCGA-FS-A1ZC-06 2 242402023 242402023 C T FARP2 Missense_Mutation p.T558I 0.19 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZC-06 2 27278044 27278044 C T AGBL5 Silent p.A277A 0.62 TCGA-FS-A1ZC-06 2 27499703 27499703 C T DNAJC5G Missense_Mutation p.S36F 0.24 deleterious(0) possibly_damaging(0.488) TCGA-FS-A1ZC-06 2 27499704 27499704 C T DNAJC5G Silent p.S36S 0.25 TCGA-FS-A1ZC-06 2 28816583 28816583 C T PLB1 Silent p.L761L 0.38 TCGA-FS-A1ZC-06 2 28816584 28816584 C T PLB1 Missense_Mutation p.P762S 0.38 tolerated(0.78) benign(0.004) TCGA-FS-A1ZC-06 2 28824165 28824165 G A PLB1 Missense_Mutation p.G858E 0.53 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 2 30993196 30993196 C T CAPN13 Silent p.L169L 0.57 TCGA-FS-A1ZC-06 2 31133871 31133871 C T GALNT14 Missense_Mutation p.D524N 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 2 33482440 33482440 G A LTBP1 Missense_Mutation p.G753R 0.24 tolerated(0.31) benign(0.14) TCGA-FS-A1ZC-06 2 39479010 39479010 G A MAP4K3 Missense_Mutation p.S853L 0.62 deleterious(0) probably_damaging(0.912) TCGA-FS-A1ZC-06 2 44553880 44553880 G A PREPL Missense_Mutation p.P573S 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZC-06 2 45829063 45829063 G A SRBD1 Silent p.V80V 0.60 TCGA-FS-A1ZC-06 2 48808954 48808954 G A STON1-GTF2A1L Silent p.E394E 0.54 TCGA-FS-A1ZC-06 2 64174584 64174584 C T VPS54 Missense_Mutation p.R393K 0.39 tolerated(0.55) benign(0.006) TCGA-FS-A1ZC-06 2 69049813 69049813 G A ARHGAP25 Silent p.G514G 0.23 TCGA-FS-A1ZC-06 2 69049814 69049814 G A ARHGAP25 Missense_Mutation p.E515K 0.21 tolerated(0.43) benign(0.088) TCGA-FS-A1ZC-06 2 71163193 71163193 C T ATP6V1B1 Missense_Mutation p.P37S 0.31 deleterious_low_confidence(0.01) benign(0.191) TCGA-FS-A1ZC-06 2 71170824 71170824 T C ATP6V1B1 Missense_Mutation p.V52A 0.54 deleterious(0) benign(0.108) TCGA-FS-A1ZC-06 2 72786584 72786584 G A EXOC6B Silent p.L305L 0.32 TCGA-FS-A1ZC-06 2 74043731 74043731 C T C2orf78 Missense_Mutation p.P794L 0.77 deleterious(0.03) probably_damaging(0.971) TCGA-FS-A1ZC-06 2 75276617 75276617 C T TACR1 Missense_Mutation p.R389Q 0.59 tolerated(0.06) benign(0.008) TCGA-FS-A1ZC-06 2 88425770 88425770 C T FABP1 Silent p.G55G 0.55 TCGA-FS-A1ZC-06 2 8930116 8930116 G A KIDINS220 Silent p.T505T 0.27 TCGA-FS-A1ZC-06 2 95944534 95944534 T C PROM2 Splice_Site p.X372_splice 0.39 TCGA-FS-A1ZC-06 2 96906417 96906417 C T STARD7-AS1 RNA 0.26 TCGA-FS-A1ZC-06 3 100949808 100949808 G A IMPG2 Missense_Mutation p.P1139S 0.32 tolerated(0.44) benign(0.025) TCGA-FS-A1ZC-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.58 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1ZC-06 3 109023372 109023372 G A DPPA2 Silent p.F268F 0.23 TCGA-FS-A1ZC-06 3 11067950 11067950 C T SLC6A1 Missense_Mutation p.S328L 0.31 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZC-06 3 119462915 119462915 G A MAATS1 Missense_Mutation p.E592K 0.36 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 3 121340598 121340598 G A FBXO40 Missense_Mutation p.E108K 0.27 tolerated(0.11) benign(0.197) TCGA-FS-A1ZC-06 3 122335962 122335962 G A PARP15 Silent p.Q317Q 0.59 TCGA-FS-A1ZC-06 3 12458537 12458537 G A PPARG Missense_Mutation p.R385Q 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A1ZC-06 3 126722195 126722195 C T PLXNA1 Missense_Mutation p.P467L 0.24 tolerated(0.48) benign(0.011) TCGA-FS-A1ZC-06 3 127379360 127379360 G A PODXL2 Silent p.E163E 0.35 TCGA-FS-A1ZC-06 3 131261456 131261456 C T CPNE4 Missense_Mutation p.G495E 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 3 13378341 13378341 G A NUP210 Silent p.F1210F 0.28 TCGA-FS-A1ZC-06 3 143704392 143704392 C T C3orf58 Missense_Mutation p.P222L 0.25 deleterious(0.01) possibly_damaging(0.891) TCGA-FS-A1ZC-06 3 150903114 150903114 T A MED12L Intron 0.51 TCGA-FS-A1ZC-06 3 150917160 150917160 G A GPR171 Missense_Mutation p.S5L 0.45 deleterious_low_confidence(0.02) benign(0.204) TCGA-FS-A1ZC-06 3 151067891 151067891 C T MED12L Silent p.L730L 0.30 TCGA-FS-A1ZC-06 3 151134120 151134120 C T MED12L Silent p.P2071P 0.32 TCGA-FS-A1ZC-06 3 151165675 151165675 G A IGSF10 Silent p.L698L 0.25 TCGA-FS-A1ZC-06 3 154855984 154855984 G A MME Missense_Mutation p.E272K 0.57 deleterious(0) possibly_damaging(0.905) TCGA-FS-A1ZC-06 3 160395290 160395290 C T ARL14 Silent p.I52I 0.31 TCGA-FS-A1ZC-06 3 167247024 167247024 C T WDR49 Missense_Mutation p.G389E 0.54 deleterious(0) possibly_damaging(0.813) TCGA-FS-A1ZC-06 3 168833255 168833255 C T MECOM Missense_Mutation p.G679E 0.66 tolerated(1) benign(0.197) TCGA-FS-A1ZC-06 3 17051295 17051295 C T PLCL2 Missense_Mutation p.R27C 0.59 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 3 170789032 170789032 G A TNIK Missense_Mutation p.H1177Y 0.35 deleterious(0) probably_damaging(0.93) TCGA-FS-A1ZC-06 3 179689405 179689405 C T PEX5L Missense_Mutation p.E24K 0.22 deleterious_low_confidence(0) benign(0) TCGA-FS-A1ZC-06 3 183639171 183639171 G A ABCC5 Missense_Mutation p.P1411S 0.28 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZC-06 3 183639172 183639172 G A ABCC5 Silent p.T1410T 0.29 TCGA-FS-A1ZC-06 3 184009924 184009924 C T ECE2 Silent p.F850F 0.26 TCGA-FS-A1ZC-06 3 189612096 189612096 C T TP63 Silent p.L616L 0.58 TCGA-FS-A1ZC-06 3 193007785 193007785 G A ATP13A5 Missense_Mutation p.P971L 0.52 deleterious(0.01) benign(0.325) TCGA-FS-A1ZC-06 3 195515866 195515866 C T MUC4 Missense_Mutation p.G862E 0.27 unknown(0) TCGA-FS-A1ZC-06 3 21465518 21465518 C T ZNF385D Silent p.G297G 0.27 TCGA-FS-A1ZC-06 3 24164267 24164267 C T THRB 3'UTR 0.35 TCGA-FS-A1ZC-06 3 2967459 2967459 G A CNTN4 Missense_Mutation p.E452K 0.60 tolerated(0.92) benign(0.017) TCGA-FS-A1ZC-06 3 3081908 3081908 G A CNTN4 Missense_Mutation p.G784E 0.29 deleterious(0.01) benign(0) TCGA-FS-A1ZC-06 3 33135202 33135202 G A TMPPE Silent p.L162L 0.48 TCGA-FS-A1ZC-06 3 36545919 36545919 C T STAC Silent p.F267F 0.36 TCGA-FS-A1ZC-06 3 36874608 36874608 G A TRANK1 Missense_Mutation p.H2112Y 0.20 tolerated(0.66) benign(0.002) TCGA-FS-A1ZC-06 3 38950535 38950535 C T SCN11A Missense_Mutation p.E418K 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-FS-A1ZC-06 3 38951679 38951679 C T SCN11A Missense_Mutation p.E327K 0.18 tolerated(0.71) benign(0.006) TCGA-FS-A1ZC-06 3 40571799 40571802 TCAG - ZNF621 Frame_Shift_Del p.S85Kfs*12 0.32 TCGA-FS-A1ZC-06 3 45136972 45136972 G A CDCP1 Silent p.V371V 0.30 TCGA-FS-A1ZC-06 3 46754496 46754496 C T PRSS50 Silent p.E272E 0.27 TCGA-FS-A1ZC-06 3 48423247 48423247 G A FBXW12 Missense_Mutation p.G348E 0.27 deleterious(0) benign(0.405) TCGA-FS-A1ZC-06 3 48725997 48725997 G A IP6K2 Silent p.S330S 0.32 TCGA-FS-A1ZC-06 3 48897041 48897041 C T SLC25A20 Missense_Mutation p.M185I 0.32 tolerated(0.64) benign(0.014) TCGA-FS-A1ZC-06 3 49400013 49400013 G A RHOA Silent p.P108P 0.64 TCGA-FS-A1ZC-06 3 51387809 51387809 C T DOCK3 Missense_Mutation p.P1365S 0.28 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 3 52485777 52485777 G A TNNC1 Silent p.L100L 0.29 TCGA-FS-A1ZC-06 3 57282295 57282295 C T APPL1 Missense_Mutation p.P260L 0.34 tolerated(0.64) benign(0.003) TCGA-FS-A1ZC-06 3 57542432 57542432 C T PDE12 Missense_Mutation p.S109L 0.19 tolerated(0.3) benign(0.005) TCGA-FS-A1ZC-06 3 58107028 58107028 G A FLNB Missense_Mutation p.G975E 0.52 deleterious(0) possibly_damaging(0.651) TCGA-FS-A1ZC-06 3 69171496 69171496 G A LMOD3 Silent p.L14L 0.20 TCGA-FS-A1ZC-06 3 69336967 69336967 G A FRMD4B Missense_Mutation p.S146L 0.52 tolerated(0.3) possibly_damaging(0.636) TCGA-FS-A1ZC-06 3 7621009 7621009 C T GRM7 Missense_Mutation p.P806S 0.69 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 3 86996211 86996211 T G VGLL3 Missense_Mutation p.Q315P 0.27 tolerated(0.18) benign(0.002) TCGA-FS-A1ZC-06 3 97202883 97202883 T G EPHA6 Missense_Mutation p.I727S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 3 97868839 97868839 G A OR5H14 Missense_Mutation p.G204S 0.25 tolerated(0.06) possibly_damaging(0.795) TCGA-FS-A1ZC-06 3 97983330 97983330 G A OR5H6 Missense_Mutation p.D68N 0.61 deleterious(0.03) benign(0.033) TCGA-FS-A1ZC-06 4 100273819 100273819 C T ADH1C Missense_Mutation p.G5E 0.58 probably_damaging(0.996) TCGA-FS-A1ZC-06 4 109089006 109089006 G A LEF1 5'UTR 0.42 TCGA-FS-A1ZC-06 4 109769920 109769920 C T COL25A1 Missense_Mutation p.E477K 0.26 tolerated(0.1) possibly_damaging(0.853) TCGA-FS-A1ZC-06 4 111397845 111397845 G A ENPEP Missense_Mutation p.R92Q 0.63 deleterious(0) probably_damaging(0.964) TCGA-FS-A1ZC-06 4 111469345 111469345 G A ENPEP Missense_Mutation p.D672N 0.53 tolerated(1) benign(0.02) TCGA-FS-A1ZC-06 4 123171625 123171625 C T KIAA1109 Missense_Mutation p.P1940L 0.48 possibly_damaging(0.717) TCGA-FS-A1ZC-06 4 123663113 123663113 C T BBS12 Silent p.F22F 0.31 TCGA-FS-A1ZC-06 4 126372959 126372959 C T FAT4 Silent p.S3596S 0.27 TCGA-FS-A1ZC-06 4 128717042 128717042 T G HSPA4L Silent p.P95P 0.61 TCGA-FS-A1ZC-06 4 145627713 145627713 G A HHIP Missense_Mutation p.A288T 0.30 tolerated(0.06) possibly_damaging(0.836) TCGA-FS-A1ZC-06 4 148406970 148406970 G A EDNRA Missense_Mutation p.S46N 0.36 tolerated_low_confidence(0.66) benign(0.001) TCGA-FS-A1ZC-06 4 155507658 155507658 C T FGA Missense_Mutation p.R308Q 0.68 tolerated_low_confidence(0.41) benign(0) TCGA-FS-A1ZC-06 4 159133876 159133876 C T TMEM144 Silent p.I19I 0.18 TCGA-FS-A1ZC-06 4 164272168 164272168 G A NPY5R Missense_Mutation p.R248K 0.63 tolerated(0.54) benign(0.001) TCGA-FS-A1ZC-06 4 166996071 166996071 G A TLL1 Missense_Mutation p.E744K 0.62 tolerated(0.15) benign(0.279) TCGA-FS-A1ZC-06 4 167658662 167658662 C T SPOCK3 Missense_Mutation p.G366E 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 4 1742603 1742603 C T TACC3 Silent p.L705L 0.54 TCGA-FS-A1ZC-06 4 175897899 175897899 G A ADAM29 Missense_Mutation p.G408E 0.54 tolerated(1) benign(0.246) TCGA-FS-A1ZC-06 4 187541874 187541874 C T FAT1 Missense_Mutation p.D1956N 0.29 probably_damaging(1) TCGA-FS-A1ZC-06 4 1902443 1902443 T G WHSC1 Missense_Mutation p.M21R 0.30 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZC-06 4 20714489 20714489 C T PACRGL Missense_Mutation p.P149S 0.30 tolerated(0.9) benign(0.004) TCGA-FS-A1ZC-06 4 2321950 2321950 C T ZFYVE28 Silent p.V250V 0.26 TCGA-FS-A1ZC-06 4 25673327 25673327 G A SLC34A2 Silent p.K344K 0.66 TCGA-FS-A1ZC-06 4 25789957 25789957 C G SEL1L3 Silent p.G702G 0.32 TCGA-FS-A1ZC-06 4 26483644 26483644 G A CCKAR Silent p.S301S 0.30 TCGA-FS-A1ZC-06 4 3451174 3451174 C T HGFAC 3'UTR 0.22 TCGA-FS-A1ZC-06 4 37650950 37650950 A G RELL1 Silent p.R87R 0.30 TCGA-FS-A1ZC-06 4 39510231 39510231 G A UGDH Silent p.L287L 0.54 TCGA-FS-A1ZC-06 4 41648742 41648742 C T LIMCH1 Silent p.F499F 0.62 TCGA-FS-A1ZC-06 4 43032553 43032553 G A GRXCR1 Missense_Mutation p.G290D 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FS-A1ZC-06 4 55972864 55972864 C T KDR Missense_Mutation p.G509E 0.19 deleterious(0.02) benign(0.073) TCGA-FS-A1ZC-06 4 57181945 57181945 C T KIAA1211 Silent p.P759P 0.30 TCGA-FS-A1ZC-06 4 69093698 69093698 C T TMPRSS11B Silent p.K394K 0.30 TCGA-FS-A1ZC-06 4 70079874 70079874 G A UGT2B11 Silent p.F189F 0.37 TCGA-FS-A1ZC-06 4 75938336 75938336 G A PARM1 Missense_Mutation p.E249K 0.57 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZC-06 4 81207688 81207688 G A FGF5 Silent p.E223E 0.21 TCGA-FS-A1ZC-06 4 81504291 81504291 C T C4orf22 Missense_Mutation p.T96M 0.26 deleterious(0.03) benign(0.01) TCGA-FS-A1ZC-06 4 86985430 86985430 C A MAPK10 Nonsense_Mutation p.E367* 0.27 TCGA-FS-A1ZC-06 4 96166223 96166223 C T UNC5C Missense_Mutation p.R283H 0.61 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZC-06 5 100222237 100222237 C T ST8SIA4 Missense_Mutation p.G105S 0.30 probably_damaging(0.996) TCGA-FS-A1ZC-06 5 101834456 101834456 C T SLCO6A1 Silent p.K31K 0.66 TCGA-FS-A1ZC-06 5 102310054 102310054 C T PAM Missense_Mutation p.S466F 0.23 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZC-06 5 110820014 110820014 G A CAMK4 Silent p.G424G 0.55 TCGA-FS-A1ZC-06 5 114577267 114577267 G A PGGT1B Missense_Mutation p.S99L 0.44 tolerated(0.1) benign(0.218) TCGA-FS-A1ZC-06 5 115837929 115837929 G C SEMA6A Missense_Mutation p.N65K 0.23 tolerated(0.06) possibly_damaging(0.573) TCGA-FS-A1ZC-06 5 131303677 131303677 C G ACSL6 Missense_Mutation p.D518H 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 5 13692194 13692194 G A DNAH5 Nonsense_Mutation p.R4592* 0.27 TCGA-FS-A1ZC-06 5 137761238 137761238 C T KDM3B Missense_Mutation p.R1460W 0.88 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZC-06 5 13842003 13842003 C T DNAH5 Missense_Mutation p.R1761Q 0.47 possibly_damaging(0.553) TCGA-FS-A1ZC-06 5 13876808 13876808 G A DNAH5 Silent p.I1127I 0.53 TCGA-FS-A1ZC-06 5 13885301 13885301 G A DNAH5 Missense_Mutation p.S927L 0.28 benign(0.002) TCGA-FS-A1ZC-06 5 139231201 139231201 G A NRG2 Missense_Mutation p.P587L 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 5 139231202 139231202 G A NRG2 Missense_Mutation p.P587S 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 5 140175678 140175678 C T PCDHA2 Missense_Mutation p.R377C 0.41 tolerated_low_confidence(0.05) benign(0.044) TCGA-FS-A1ZC-06 5 140236585 140236585 C T PCDHA10 Missense_Mutation p.H318Y 0.90 tolerated_low_confidence(0.16) possibly_damaging(0.633) TCGA-FS-A1ZC-06 5 140256039 140256039 C T PCDHA12 Missense_Mutation p.P328S 0.92 tolerated_low_confidence(0.12) possibly_damaging(0.532) TCGA-FS-A1ZC-06 5 140256124 140256124 C T PCDHA12 Missense_Mutation p.S356L 0.89 deleterious_low_confidence(0.04) benign(0.321) TCGA-FS-A1ZC-06 5 140626954 140626954 C T PCDHB15 Missense_Mutation p.S603L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-FS-A1ZC-06 5 140745056 140745056 C T PCDHGA5 Missense_Mutation p.P387S 0.50 tolerated_low_confidence(0.36) benign(0.119) TCGA-FS-A1ZC-06 5 145246199 145246199 C T GRXCR2 Silent p.R143R 0.85 TCGA-FS-A1ZC-06 5 146236083 146236083 C T PPP2R2B Intron 0.29 TCGA-FS-A1ZC-06 5 147286066 147286066 C T C5orf46 5'Flank 0.27 TCGA-FS-A1ZC-06 5 148617116 148617116 C T ABLIM3 Missense_Mutation p.H332Y 0.40 tolerated(1) benign(0) TCGA-FS-A1ZC-06 5 149500846 149500846 G A PDGFRB Missense_Mutation p.S795F 0.25 deleterious(0) benign(0.376) TCGA-FS-A1ZC-06 5 149753761 149753761 C T TCOF1 Nonsense_Mutation p.Q299* 0.44 TCGA-FS-A1ZC-06 5 149755438 149755438 G A TCOF1 Missense_Mutation p.S620N 0.52 tolerated(0.08) possibly_damaging(0.825) TCGA-FS-A1ZC-06 5 158750203 158750203 G A IL12B Silent p.L75L 0.26 TCGA-FS-A1ZC-06 5 159776575 159776575 G A C1QTNF2 Missense_Mutation p.S198L 0.21 deleterious(0) probably_damaging(0.956) TCGA-FS-A1ZC-06 5 160063227 160063227 C T ATP10B Missense_Mutation p.G364S 0.63 tolerated(0.07) probably_damaging(0.951) TCGA-FS-A1ZC-06 5 160721197 160721197 G A GABRB2 Missense_Mutation p.T477I 0.22 deleterious(0.01) benign(0.281) TCGA-FS-A1ZC-06 5 160757971 160757971 C T GABRB2 Silent p.G332G 0.27 TCGA-FS-A1ZC-06 5 176011480 176011480 G A CDHR2 Missense_Mutation p.S733N 0.21 tolerated(0.3) possibly_damaging(0.826) TCGA-FS-A1ZC-06 5 176019773 176019773 G A CDHR2 Missense_Mutation p.E1262K 0.58 tolerated(0.66) benign(0.001) TCGA-FS-A1ZC-06 5 176637511 176637511 T A NSD1 Missense_Mutation p.I704N 0.30 deleterious_low_confidence(0.01) benign(0.126) TCGA-FS-A1ZC-06 5 178358720 178358720 G A ZFP2 Missense_Mutation p.G136R 0.25 deleterious(0.01) possibly_damaging(0.628) TCGA-FS-A1ZC-06 5 180057595 180057595 G A FLT4 Silent p.I120I 0.36 TCGA-FS-A1ZC-06 5 19483633 19483633 C T CDH18 Silent p.R553R 0.27 TCGA-FS-A1ZC-06 5 31323178 31323178 C T CDH6 Silent p.V712V 0.53 TCGA-FS-A1ZC-06 5 31995685 31995685 G A PDZD2 Missense_Mutation p.E328K 0.24 deleterious(0) probably_damaging(0.963) TCGA-FS-A1ZC-06 5 32087979 32087979 C T PDZD2 Silent p.V1475V 0.28 TCGA-FS-A1ZC-06 5 32126293 32126293 G A GOLPH3 3'UTR 0.22 TCGA-FS-A1ZC-06 5 35065834 35065834 C T PRLR Missense_Mutation p.G409D 0.26 tolerated(0.74) benign(0.004) TCGA-FS-A1ZC-06 5 35876293 35876293 G A IL7R Missense_Mutation p.G362E 0.27 tolerated(0.22) benign(0.167) TCGA-FS-A1ZC-06 5 36049243 36049243 G A UGT3A2 Silent p.F197F 0.36 TCGA-FS-A1ZC-06 5 42718559 42718559 G A GHR Missense_Mutation p.G317E 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 5 64447589 64447589 C T ADAMTS6 3'UTR 0.30 TCGA-FS-A1ZC-06 5 71482544 71482544 C T MAP1B Missense_Mutation p.S158F 0.18 unknown(0) TCGA-FS-A1ZC-06 5 72178914 72178914 G A TNPO1 Silent p.T335T 0.31 TCGA-FS-A1ZC-06 5 74046440 74046440 A C GFM2 Silent p.G161G 0.28 TCGA-FS-A1ZC-06 5 76349860 76349860 C T AGGF1 Missense_Mutation p.S513F 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-FS-A1ZC-06 5 79026253 79026253 G A CMYA5 Silent p.V555V 0.34 TCGA-FS-A1ZC-06 5 79616895 79616895 C T SPZ1 Silent p.V287V 0.40 TCGA-FS-A1ZC-06 5 90016003 90016003 C T GPR98 Missense_Mutation p.P3196S 0.25 probably_damaging(0.968) TCGA-FS-A1ZC-06 5 95735892 95735892 T G PCSK1 Splice_Site p.X399_splice 0.27 TCGA-FS-A1ZC-06 6 108230237 108230237 G A SEC63 Silent p.G209G 0.42 TCGA-FS-A1ZC-06 6 111346629 111346629 C T RPF2 Silent p.S255S 0.89 TCGA-FS-A1ZC-06 6 116836995 116836995 C T FAM26E Missense_Mutation p.T258M 0.44 deleterious(0) possibly_damaging(0.594) TCGA-FS-A1ZC-06 6 117127827 117127827 G A GPRC6A Silent p.P347P 0.87 TCGA-FS-A1ZC-06 6 119515055 119515055 G A MAN1A1 Missense_Mutation p.H405Y 0.76 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZC-06 6 123369776 123369776 C T CLVS2 Missense_Mutation p.P192S 0.89 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1ZC-06 6 125233505 125233505 T C RP11-510H23.1 RNA 0.84 TCGA-FS-A1ZC-06 6 125550371 125550371 G A TPD52L1 Silent p.Q81Q 0.44 TCGA-FS-A1ZC-06 6 130763021 130763021 G A TMEM200A Missense_Mutation p.G485E 0.97 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 6 132021895 132021895 G A OR2A4 Missense_Mutation p.S216L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZC-06 6 134493877 134493877 C T SGK1 Silent p.L290L 0.36 TCGA-FS-A1ZC-06 6 147525714 147525714 G A STXBP5 Missense_Mutation p.G16S 0.88 tolerated(1) benign(0) TCGA-FS-A1ZC-06 6 152847283 152847283 G A SYNE1 Missense_Mutation p.L53F 0.83 probably_damaging(0.999) TCGA-FS-A1ZC-06 6 158507974 158507974 C T SYNJ2 Missense_Mutation p.P1099L 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 6 160505109 160505109 C T IGF2R Silent p.C1987C 0.85 TCGA-FS-A1ZC-06 6 163483255 163483255 C T PACRG Missense_Mutation p.P122L 0.78 deleterious(0) possibly_damaging(0.873) TCGA-FS-A1ZC-06 6 27834823 27834823 G A HIST1H1B Missense_Mutation p.P162L 0.27 deleterious(0.01) unknown(0) TCGA-FS-A1ZC-06 6 30954052 30954052 G A MUC21 Missense_Mutation p.G34R 0.50 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A1ZC-06 6 32056824 32056824 C T TNXB Missense_Mutation p.M839I 0.23 benign(0.01) TCGA-FS-A1ZC-06 6 32180660 32180660 C T NOTCH4 Missense_Mutation p.D823N 0.28 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZC-06 6 32180661 32180661 C T NOTCH4 Silent p.Q822Q 0.28 TCGA-FS-A1ZC-06 6 32709284 32709284 G A HLA-DQA2 Missense_Mutation p.G22R 0.34 tolerated(0.09) benign(0.043) TCGA-FS-A1ZC-06 6 33243594 33243594 T G RPS18 Silent p.A41A 0.23 TCGA-FS-A1ZC-06 6 35782489 35782489 C T LHFPL5 Silent p.S193S 0.28 TCGA-FS-A1ZC-06 6 35943221 35943221 G A SLC26A8 Silent p.F406F 0.31 TCGA-FS-A1ZC-06 6 37250023 37250023 C T TBC1D22B Missense_Mutation p.P162S 0.23 deleterious(0.04) benign(0.039) TCGA-FS-A1ZC-06 6 41197297 41197297 C T TREML4 Missense_Mutation p.P145S 0.18 tolerated(0.15) benign(0.03) TCGA-FS-A1ZC-06 6 42146597 42146597 G T GUCA1A Missense_Mutation p.D137Y 0.14 deleterious(0) probably_damaging(0.945) TCGA-FS-A1ZC-06 6 43181575 43181575 C T CUL9 Silent p.L1871L 0.49 TCGA-FS-A1ZC-06 6 43745229 43745229 C T VEGFA Nonsense_Mutation p.Q228* 0.44 TCGA-FS-A1ZC-06 6 44797398 44797398 G A SUPT3H 3'UTR 0.35 TCGA-FS-A1ZC-06 6 47200607 47200607 G A TNFRSF21 Missense_Mutation p.A621V 0.37 deleterious(0) probably_damaging(0.972) TCGA-FS-A1ZC-06 6 47678608 47678608 G A GPR115 Missense_Mutation p.E96K 0.52 tolerated(0.71) benign(0.073) TCGA-FS-A1ZC-06 6 49666136 49666136 A T CRISP2 Missense_Mutation p.L119Q 0.23 tolerated(0.26) benign(0.01) TCGA-FS-A1ZC-06 6 49753976 49753976 G A PGK2 Missense_Mutation p.P309S 0.40 tolerated(0.12) benign(0) TCGA-FS-A1ZC-06 6 55214901 55214901 G A GFRAL Missense_Mutation p.E110K 0.23 tolerated(0.18) benign(0.003) TCGA-FS-A1ZC-06 6 56471405 56471406 - C DST Intron 0.28 TCGA-FS-A1ZC-06 6 56882132 56882132 C T BEND6 Missense_Mutation p.S216F 0.40 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FS-A1ZC-06 6 56997896 56997896 C T ZNF451 Missense_Mutation p.H161Y 0.29 deleterious(0.03) benign(0.034) TCGA-FS-A1ZC-06 6 57467182 57467182 C T PRIM2 3'UTR 0.13 TCGA-FS-A1ZC-06 6 84324575 84324575 C T SNAP91 Splice_Site p.X295_splice 0.17 TCGA-FS-A1ZC-06 6 94068038 94068038 G A EPHA7 Silent p.S308S 0.82 TCGA-FS-A1ZC-06 6 96651602 96651602 T C FUT9 Missense_Mutation p.W191R 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 6 99857138 99857138 G A PNISR Missense_Mutation p.P195L 0.84 deleterious(0.01) possibly_damaging(0.74) TCGA-FS-A1ZC-06 7 101844909 101844909 C T CUX1 Silent p.L789L 0.49 TCGA-FS-A1ZC-06 7 101844965 101844965 C T CUX1 Silent p.P807P 0.24 TCGA-FS-A1ZC-06 7 106508763 106508763 G A PIK3CG Missense_Mutation p.A253T 0.48 tolerated(0.57) benign(0.117) TCGA-FS-A1ZC-06 7 107669562 107669562 C T LAMB4 Missense_Mutation p.G1691E 0.48 tolerated(1) benign(0.001) TCGA-FS-A1ZC-06 7 116414943 116414943 C T MET Missense_Mutation p.P1031S 0.41 tolerated(0.09) possibly_damaging(0.547) TCGA-FS-A1ZC-06 7 117364737 117364737 G A CTTNBP2 Silent p.S1437S 0.39 TCGA-FS-A1ZC-06 7 120906769 120906769 C T CPED1 Missense_Mutation p.P847L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 7 12269310 12269310 A T TMEM106B Silent p.T149T 0.28 TCGA-FS-A1ZC-06 7 123276868 123276868 C T ASB15 Missense_Mutation p.P534S 0.38 deleterious(0.03) probably_damaging(0.98) TCGA-FS-A1ZC-06 7 129910623 129910623 G A CPA2 Missense_Mutation p.E127K 0.44 deleterious(0.03) benign(0.005) TCGA-FS-A1ZC-06 7 130139723 130139723 T A MEST Missense_Mutation p.F181L 0.20 tolerated(0.13) benign(0.405) TCGA-FS-A1ZC-06 7 131883273 131883273 A T PLXNA4 Silent p.P903P 0.19 TCGA-FS-A1ZC-06 7 132192854 132192854 G A PLXNA4 Missense_Mutation p.S200F 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 7 140301799 140301799 C T DENND2A Silent p.R133R 0.22 TCGA-FS-A1ZC-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZC-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.39 deleterious(0) possibly_damaging(0.838) TCGA-FS-A1ZC-06 7 141747669 141747669 G A MGAM Silent p.T861T 0.33 TCGA-FS-A1ZC-06 7 141752622 141752622 C T MGAM Silent p.V999V 0.42 TCGA-FS-A1ZC-06 7 141766401 141766401 C T MGAM Intron 0.48 TCGA-FS-A1ZC-06 7 141799512 141799512 G A MGAM Missense_Mutation p.E1721K 0.47 tolerated(0.25) benign(0.002) TCGA-FS-A1ZC-06 7 142180532 142180532 G A TRBV6-5 Silent p.F109F 0.46 TCGA-FS-A1ZC-06 7 142198044 142198044 C T TRBV11-2 RNA 0.50 TCGA-FS-A1ZC-06 7 142561946 142561946 C T EPHB6 Missense_Mutation p.L130F 0.23 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZC-06 7 142575478 142575478 A C TRPV6 Missense_Mutation p.L92R 0.19 tolerated(0.06) possibly_damaging(0.835) TCGA-FS-A1ZC-06 7 143029844 143029844 T A CLCN1 Missense_Mutation p.L427M 0.44 deleterious(0.01) probably_damaging(0.977) TCGA-FS-A1ZC-06 7 143054082 143054082 G A FAM131B Missense_Mutation p.P215L 0.09 tolerated(0.26) probably_damaging(0.999) TCGA-FS-A1ZC-06 7 148544380 148544380 G A EZH2 Missense_Mutation p.T4I 0.39 tolerated_low_confidence(0.1) possibly_damaging(0.72) TCGA-FS-A1ZC-06 7 148544381 148544381 T G EZH2 Missense_Mutation p.T4P 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.72) TCGA-FS-A1ZC-06 7 148876807 148876807 C A ZNF398 Missense_Mutation p.L615I 0.29 tolerated_low_confidence(0.21) benign(0.006) TCGA-FS-A1ZC-06 7 150171528 150171528 G A GIMAP8 Missense_Mutation p.D371N 0.36 tolerated(0.41) benign(0.217) TCGA-FS-A1ZC-06 7 150269996 150269996 G A GIMAP4 Missense_Mutation p.E280K 0.45 tolerated(0.07) benign(0.025) TCGA-FS-A1ZC-06 7 150439881 150439881 C T GIMAP5 Silent p.F218F 0.26 TCGA-FS-A1ZC-06 7 151860685 151860685 G A KMT2C Missense_Mutation p.P3326L 0.48 possibly_damaging(0.887) TCGA-FS-A1ZC-06 7 154593139 154593139 G A DPP6 Silent p.G458G 0.36 TCGA-FS-A1ZC-06 7 154863156 154863156 G A HTR5A Missense_Mutation p.E183K 0.38 tolerated(0.12) benign(0.364) TCGA-FS-A1ZC-06 7 19184726 19184726 G A FERD3L Missense_Mutation p.S87F 0.21 tolerated(0.11) benign(0.377) TCGA-FS-A1ZC-06 7 23164757 23164757 T C KLHL7 Silent p.F136F 0.41 TCGA-FS-A1ZC-06 7 27147911 27147911 A T HOXA3 Missense_Mutation p.C319S 0.50 deleterious(0.01) benign(0.025) TCGA-FS-A1ZC-06 7 30671904 30671904 G A GARS Missense_Mutation p.D649N 0.25 tolerated(0.06) probably_damaging(0.935) TCGA-FS-A1ZC-06 7 34094863 34094863 G A BMPER Missense_Mutation p.R292Q 0.49 tolerated(0.38) benign(0.001) TCGA-FS-A1ZC-06 7 38370122 38370122 C T TRGV8 Missense_Mutation p.G59E 0.43 deleterious(0.01) probably_damaging(0.975) TCGA-FS-A1ZC-06 7 38370227 38370227 C G TRGV8 Missense_Mutation p.G24A 0.17 tolerated(0.24) possibly_damaging(0.857) TCGA-FS-A1ZC-06 7 44198780 44198780 C T GCK 5'UTR 0.27 TCGA-FS-A1ZC-06 7 44294152 44294152 C T CAMK2B Silent p.E110E 0.16 TCGA-FS-A1ZC-06 7 44302632 44302632 G A CAMK2B Silent p.I64I 0.18 TCGA-FS-A1ZC-06 7 5331409 5331409 C T SLC29A4 Silent p.A167A 0.21 TCGA-FS-A1ZC-06 7 57510020 57510020 G A ZNF716 Missense_Mutation p.G9E 0.53 tolerated_low_confidence(0.13) probably_damaging(1) TCGA-FS-A1ZC-06 7 62752368 62752368 C T ZNF733P RNA 0.36 TCGA-FS-A1ZC-06 7 64168503 64168503 C T ZNF107 Silent p.P607P 0.24 TCGA-FS-A1ZC-06 7 65157761 65157761 C T INTS4L2 RNA 0.16 TCGA-FS-A1ZC-06 7 66416045 66416045 C T TMEM248 Missense_Mutation p.P235S 0.23 tolerated(0.13) probably_damaging(0.961) TCGA-FS-A1ZC-06 7 70800709 70800709 C T WBSCR17 Missense_Mutation p.R138C 0.19 deleterious(0) benign(0.412) TCGA-FS-A1ZC-06 7 75573182 75573182 C T POR Intron 0.19 TCGA-FS-A1ZC-06 7 76909909 76909909 G A CCDC146 Missense_Mutation p.E620K 0.50 deleterious(0.05) probably_damaging(0.993) TCGA-FS-A1ZC-06 7 86394322 86394322 G A GRM3 Intron 0.17 TCGA-FS-A1ZC-06 7 86824468 86824468 G A DMTF1 3'UTR 0.50 TCGA-FS-A1ZC-06 7 87825833 87825833 G A ADAM22 3'UTR 0.50 TCGA-FS-A1ZC-06 7 93055630 93055630 G A CALCR 3'UTR 0.36 TCGA-FS-A1ZC-06 7 99631847 99631847 C T ZKSCAN1 3'UTR 0.39 TCGA-FS-A1ZC-06 8 10464636 10464636 C T RP1L1 Silent p.R2324R 0.40 TCGA-FS-A1ZC-06 8 110346333 110346333 C T NUDCD1 5'UTR 0.27 TCGA-FS-A1ZC-06 8 110445392 110445392 C T PKHD1L1 Missense_Mutation p.S1096L 0.21 tolerated(0.06) benign(0.109) TCGA-FS-A1ZC-06 8 110451201 110451201 G A PKHD1L1 Missense_Mutation p.G1279E 0.49 tolerated(0.16) benign(0.134) TCGA-FS-A1ZC-06 8 110527420 110527420 T G PKHD1L1 Missense_Mutation p.F3859V 0.34 deleterious(0) benign(0.075) TCGA-FS-A1ZC-06 8 110984918 110984918 C G KCNV1 Missense_Mutation p.G187A 0.26 tolerated(0.61) benign(0.001) TCGA-FS-A1ZC-06 8 125989574 125989574 C T ZNF572 Missense_Mutation p.S355F 0.14 deleterious(0.03) benign(0.006) TCGA-FS-A1ZC-06 8 130866549 130866549 C T FAM49B Missense_Mutation p.R160K 0.17 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZC-06 8 131896897 131896897 G A ADCY8 Silent p.T674T 0.49 TCGA-FS-A1ZC-06 8 143955655 143955655 C T CYP11B1 3'UTR 0.67 TCGA-FS-A1ZC-06 8 146157776 146157776 C T ZNF16 Missense_Mutation p.E133K 0.29 tolerated(0.49) benign(0.001) TCGA-FS-A1ZC-06 8 3081279 3081279 C T CSMD1 Missense_Mutation p.D1486N 0.78 probably_damaging(0.918) TCGA-FS-A1ZC-06 8 32621757 32621757 C T NRG1 Missense_Mutation p.P592L 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 8 35402037 35402037 C T UNC5D Intron 0.23 TCGA-FS-A1ZC-06 8 36793521 36793521 G A KCNU1 3'UTR 0.26 TCGA-FS-A1ZC-06 8 37732618 37732618 G A RAB11FIP1 Missense_Mutation p.P346L 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZC-06 8 39111981 39111981 C T ADAM32 Missense_Mutation p.P651S 0.46 deleterious(0) possibly_damaging(0.835) TCGA-FS-A1ZC-06 8 39468212 39468212 C T ADAM18 Missense_Mutation p.P170L 0.30 tolerated(0.77) benign(0.002) TCGA-FS-A1ZC-06 8 39495990 39495990 G A ADAM18 Silent p.R278R 0.43 TCGA-FS-A1ZC-06 8 42232279 42232279 C T DKK4 Missense_Mutation p.G139R 0.18 tolerated(0.1) benign(0.139) TCGA-FS-A1ZC-06 8 42940398 42940398 T G FNTA Missense_Mutation p.N371K 0.14 tolerated(0.31) benign(0.035) TCGA-FS-A1ZC-06 8 51362228 51362228 G A SNTG1 Missense_Mutation p.G74R 0.10 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZC-06 8 55534741 55534741 T G RP1 Missense_Mutation p.F227C 0.13 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 8 59410864 59410864 G A CYP7A1 Missense_Mutation p.P82L 0.48 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZC-06 8 61654364 61654364 G T CHD7 Missense_Mutation p.V125F 0.26 benign(0) TCGA-FS-A1ZC-06 8 67062683 67062683 G A TRIM55 Missense_Mutation p.E323K 0.21 tolerated(0.19) benign(0.011) TCGA-FS-A1ZC-06 8 68255615 68255615 G A ARFGEF1 5'UTR 0.17 TCGA-FS-A1ZC-06 8 70674000 70674000 C T SLCO5A1 Missense_Mutation p.D340N 0.55 deleterious(0.02) possibly_damaging(0.807) TCGA-FS-A1ZC-06 8 73480294 73480294 C T KCNB2 Missense_Mutation p.H109Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZC-06 8 86193593 86193593 G A CA13 3'UTR 0.20 TCGA-FS-A1ZC-06 8 87242255 87242255 G A SLC7A13 Silent p.L84L 0.40 TCGA-FS-A1ZC-06 8 95405993 95405993 G A RAD54B Missense_Mutation p.S499L 0.42 deleterious(0.03) possibly_damaging(0.477) TCGA-FS-A1ZC-06 8 95686711 95686711 C T ESRP1 Missense_Mutation p.S543F 0.46 tolerated(0.06) probably_damaging(0.983) TCGA-FS-A1ZC-06 8 97614757 97614757 G A SDC2 Splice_Site p.X102_splice 0.14 TCGA-FS-A1ZC-06 8 98289124 98289124 G A TSPYL5 Missense_Mutation p.P317S 0.13 tolerated(0.99) probably_damaging(0.981) TCGA-FS-A1ZC-06 9 101006406 101006406 C T TBC1D2 Missense_Mutation p.E173K 0.89 tolerated(0.21) benign(0.193) TCGA-FS-A1ZC-06 9 109688951 109688951 C T ZNF462 Missense_Mutation p.H920Y 0.90 possibly_damaging(0.718) TCGA-FS-A1ZC-06 9 113703936 113703936 C T LPAR1 Nonsense_Mutation p.W186* 0.89 TCGA-FS-A1ZC-06 9 114518610 114518610 T C C9orf84 Missense_Mutation p.E222G 0.64 deleterious(0) benign(0.053) TCGA-FS-A1ZC-06 9 123453747 123453747 G A MEGF9 Intron 0.56 TCGA-FS-A1ZC-06 9 124752024 124752024 G A TTLL11 Missense_Mutation p.P330L 0.84 tolerated(0.08) benign(0.157) TCGA-FS-A1ZC-06 9 125391445 125391445 G A OR1B1 Missense_Mutation p.R124C 0.25 deleterious(0.04) possibly_damaging(0.886) TCGA-FS-A1ZC-06 9 125424312 125424312 C T OR1L1 Silent p.A106A 0.40 TCGA-FS-A1ZC-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.88 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 9 133755918 133755918 C T ABL1 Silent p.V534V 0.49 TCGA-FS-A1ZC-06 9 134020013 134020013 C T NUP214 Silent p.S547S 0.33 TCGA-FS-A1ZC-06 9 135447805 135447805 G A C9orf171 Missense_Mutation p.E291K 0.88 tolerated(0.33) benign(0.173) TCGA-FS-A1ZC-06 9 139743844 139743844 C T PHPT1 5'UTR 0.49 TCGA-FS-A1ZC-06 9 139836504 139836504 G A FBXW5 Nonsense_Mutation p.Q364* 0.23 TCGA-FS-A1ZC-06 9 140083138 140083138 C T SSNA1 5'UTR 0.31 TCGA-FS-A1ZC-06 9 14805029 14805029 G A FREM1 Silent p.S1132S 0.45 TCGA-FS-A1ZC-06 9 14805030 14805030 G A FREM1 Missense_Mutation p.S1132F 0.47 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZC-06 9 2029165 2029165 C T SMARCA2 Missense_Mutation p.P48L 0.33 unknown(0) TCGA-FS-A1ZC-06 9 27206633 27206633 G C TEK Missense_Mutation p.K806N 0.38 deleterious(0) benign(0.443) TCGA-FS-A1ZC-06 9 35295821 35295821 C T UNC13B Missense_Mutation p.P219S 0.89 tolerated_low_confidence(0.93) benign(0) TCGA-FS-A1ZC-06 9 4286116 4286116 C T GLIS3 Missense_Mutation p.G104R 0.46 tolerated(0.24) benign(0.017) TCGA-FS-A1ZC-06 9 77377006 77377006 G A TRPM6 Silent p.I1527I 0.76 TCGA-FS-A1ZC-06 9 84605857 84605857 C T SPATA31D1 Missense_Mutation p.P158S 0.90 tolerated(0.31) benign(0.046) TCGA-FS-A1ZC-06 9 99795232 99795232 C T CTSV Silent p.%3D 0.86 TCGA-FS-A1ZC-06 X 100104847 100104847 C T NOX1 Missense_Mutation p.G404R 1.00 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 X 105279362 105279362 G A SERPINA7 Missense_Mutation p.P213S 0.89 deleterious(0.02) possibly_damaging(0.884) TCGA-FS-A1ZC-06 X 105280807 105280807 G A SERPINA7 Silent p.S81S 0.90 TCGA-FS-A1ZC-06 X 106083426 106083426 C T TBC1D8B Missense_Mutation p.S501L 0.73 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZC-06 X 111090558 111090558 G A TRPC5 Missense_Mutation p.S495F 0.97 tolerated(0.16) benign(0.329) TCGA-FS-A1ZC-06 X 123519813 123519813 G A TENM1 Silent p.S1930S 1.00 TCGA-FS-A1ZC-06 X 123870807 123870807 C T TENM1 Missense_Mutation p.R259K 0.86 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-FS-A1ZC-06 X 12734515 12734515 C T FRMPD4 Missense_Mutation p.P646L 0.83 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-FS-A1ZC-06 X 12905377 12905377 G A TLR7 Missense_Mutation p.G584R 0.86 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZC-06 X 130416672 130416672 G A IGSF1 Missense_Mutation p.A331V 0.90 deleterious(0.04) benign(0.06) TCGA-FS-A1ZC-06 X 135732472 135732472 G A CD40LG Silent p.T68T 0.90 TCGA-FS-A1ZC-06 X 140993370 140993370 G C MAGEC1 Silent p.G60G 0.70 TCGA-FS-A1ZC-06 X 140993371 140993371 G A MAGEC1 Missense_Mutation p.E61K 0.69 deleterious_low_confidence(0.01) benign(0.292) TCGA-FS-A1ZC-06 X 150912737 150912737 G A CNGA2 Missense_Mutation p.E588K 0.83 tolerated(0.85) benign(0) TCGA-FS-A1ZC-06 X 151123253 151123253 C T GABRE Missense_Mutation p.D481N 0.92 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZC-06 X 153282490 153282490 G A IRAK1 Missense_Mutation p.P313L 0.91 tolerated(0.1) benign(0.008) TCGA-FS-A1ZC-06 X 153706298 153706298 G A LAGE3 Silent p.P139P 0.75 TCGA-FS-A1ZC-06 X 154157263 154157263 G A F8 Missense_Mutation p.S1601F 0.91 tolerated(0.06) benign(0.009) TCGA-FS-A1ZC-06 X 35820703 35820703 G A MAGEB16 Missense_Mutation p.M130I 0.59 tolerated(0.13) benign(0.211) TCGA-FS-A1ZC-06 X 37312719 37312719 C T PRRG1 Missense_Mutation p.P168S 0.65 deleterious(0.02) possibly_damaging(0.901) TCGA-FS-A1ZC-06 X 71887293 71887293 G A PHKA1 Silent p.L217L 0.88 TCGA-FS-A1ZC-06 X 75004635 75004635 G A MAGEE2 Silent p.V84V 1.00 TCGA-FS-A1ZC-06 X 78010794 78010794 C T LPAR4 Missense_Mutation p.P143L 0.92 deleterious(0) probably_damaging(1) TCGA-FS-A1ZC-06 X 83128413 83128413 C T CYLC1 Missense_Mutation p.P233S 0.89 tolerated(0.62) benign(0) TCGA-FS-A1ZC-06 X 99662809 99662809 T G PCDH19 Missense_Mutation p.S263R 0.84 deleterious(0) possibly_damaging(0.7) TCGA-FS-A1ZD-06 10 105005728 105005728 G A RPEL1 5'UTR 0.16 TCGA-FS-A1ZD-06 10 123997041 123997041 C T TACC2 Silent p.I2753I 0.54 TCGA-FS-A1ZD-06 10 135000066 135000066 C T KNDC1 Missense_Mutation p.P405L 0.25 tolerated(0.21) benign(0) TCGA-FS-A1ZD-06 10 16967390 16967390 A C CUBN Missense_Mutation p.L2166V 0.87 deleterious(0.04) possibly_damaging(0.591) TCGA-FS-A1ZD-06 10 5494349 5494349 C T NET1 Missense_Mutation p.S131F 0.85 deleterious(0.01) possibly_damaging(0.825) TCGA-FS-A1ZD-06 10 71990114 71990114 G A PPA1 Missense_Mutation p.P36S 0.93 deleterious(0.01) benign(0.048) TCGA-FS-A1ZD-06 10 89692839 89692839 T C PTEN Missense_Mutation p.L108P 0.88 deleterious(0) probably_damaging(0.917) TCGA-FS-A1ZD-06 10 96028694 96028694 G A PLCE1 Silent p.L1430L 0.33 TCGA-FS-A1ZD-06 11 100226921 100226921 G A CNTN5 Silent p.L1091L 0.38 TCGA-FS-A1ZD-06 11 107260890 107260890 A C CWF19L2 Missense_Mutation p.D594E 0.33 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZD-06 11 110035104 110035104 C T ZC3H12C Missense_Mutation p.H432Y 0.26 deleterious(0) probably_damaging(0.946) TCGA-FS-A1ZD-06 11 121448004 121448004 C T SORL1 Missense_Mutation p.R1159W 0.32 deleterious(0.03) probably_damaging(0.948) TCGA-FS-A1ZD-06 11 130288945 130288945 G A ADAMTS8 Intron 0.42 TCGA-FS-A1ZD-06 11 133790544 133790544 G A IGSF9B Missense_Mutation p.P1026S 0.38 tolerated_low_confidence(0.15) benign(0.436) TCGA-FS-A1ZD-06 11 46393075 46393075 C T DGKZ Silent p.I415I 0.45 TCGA-FS-A1ZD-06 11 48286316 48286316 G A OR4X1 Missense_Mutation p.G302R 0.37 tolerated(1) benign(0.001) TCGA-FS-A1ZD-06 11 48347057 48347057 C T OR4C3 Missense_Mutation p.L189F 0.15 tolerated(1) benign(0.023) TCGA-FS-A1ZD-06 11 62300587 62300587 C T AHNAK Missense_Mutation p.M434I 0.52 benign(0.009) TCGA-FS-A1ZD-06 11 63141223 63141223 T C SLC22A9 Missense_Mutation p.L205S 0.42 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZD-06 11 65658858 65658858 G T CCDC85B Missense_Mutation p.D202Y 0.38 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FS-A1ZD-06 11 66191075 66191075 G A NPAS4 Missense_Mutation p.E279K 0.49 deleterious(0.02) possibly_damaging(0.682) TCGA-FS-A1ZD-06 11 67790121 67790121 C G ALDH3B1 Missense_Mutation p.F334L 0.58 deleterious(0.01) benign(0.179) TCGA-FS-A1ZD-06 11 6816642 6816642 C T OR6A2 Missense_Mutation p.E100K 0.39 tolerated(0.27) benign(0.071) TCGA-FS-A1ZD-06 11 6977392 6977392 T C ZNF215 Missense_Mutation p.I395T 0.44 tolerated(0.63) benign(0.029) TCGA-FS-A1ZD-06 11 72945188 72945188 C T P2RY2 5'UTR 0.29 TCGA-FS-A1ZD-06 11 92615911 92615911 G A FAT3 Missense_Mutation p.E4097K 0.40 benign(0.025) TCGA-FS-A1ZD-06 11 92916041 92916041 A G SLC36A4 Missense_Mutation p.V97A 0.45 deleterious(0.01) possibly_damaging(0.649) TCGA-FS-A1ZD-06 11 9310040 9310040 T C TMEM41B Missense_Mutation p.I137M 0.51 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZD-06 12 101520688 101520688 C T ANO4 Missense_Mutation p.S868L 0.31 deleterious(0) benign(0.209) TCGA-FS-A1ZD-06 12 104192412 104192412 C T NT5DC3 Missense_Mutation p.E190K 0.25 tolerated(0.47) benign(0.327) TCGA-FS-A1ZD-06 12 105150791 105150791 G A CHST11 Missense_Mutation p.R90Q 0.64 tolerated(0.41) benign(0.098) TCGA-FS-A1ZD-06 12 106461156 106461156 C T NUAK1 Silent p.K470K 0.59 TCGA-FS-A1ZD-06 12 108985408 108985408 C T TMEM119 Missense_Mutation p.G251E 0.32 tolerated_low_confidence(0.22) benign(0.188) TCGA-FS-A1ZD-06 12 109527892 109527892 C T ALKBH2 Nonsense_Mutation p.W134* 0.31 TCGA-FS-A1ZD-06 12 109954637 109954637 C T UBE3B Missense_Mutation p.S675F 0.64 deleterious(0.05) benign(0.195) TCGA-FS-A1ZD-06 12 113398967 113398967 C T OAS3 Silent p.F583F 0.45 TCGA-FS-A1ZD-06 12 14939967 14939967 T C WBP11 3'UTR 0.53 TCGA-FS-A1ZD-06 12 15747987 15747987 G A PTPRO 3'UTR 0.32 TCGA-FS-A1ZD-06 12 16185524 16185524 C T DERA Missense_Mutation p.T229I 0.54 tolerated(0.07) benign(0.015) TCGA-FS-A1ZD-06 12 18435395 18435401 GAAGCCC AAAG PIK3C2G In_Frame_Del p.G127_P129delinsES 0.20 TCGA-FS-A1ZD-06 12 2602424 2602424 G A CACNA1C Missense_Mutation p.G329S 0.26 deleterious(0.04) possibly_damaging(0.644) TCGA-FS-A1ZD-06 12 46285865 46285891 GAAGTCTTCTACCAAGTAAGGAAAATG - ARID2 Splice_Site p.X1711_splice 0.31 TCGA-FS-A1ZD-06 12 50036041 50036041 G A PRPF40B Silent p.R636R 0.29 TCGA-FS-A1ZD-06 12 53207774 53207774 G A KRT4 Silent p.G23G 0.48 TCGA-FS-A1ZD-06 12 55356885 55356885 G A TESPA1 Missense_Mutation p.S266F 0.38 tolerated(0.1) benign(0.022) TCGA-FS-A1ZD-06 12 57110989 57110989 G A NACA Intron 0.58 TCGA-FS-A1ZD-06 12 57389082 57389082 C T GPR182 Missense_Mutation p.T30I 0.47 deleterious(0) possibly_damaging(0.534) TCGA-FS-A1ZD-06 12 6173510 6173510 G A VWF Missense_Mutation p.T445I 0.52 deleterious(0.04) benign(0.398) TCGA-FS-A1ZD-06 12 66725086 66725086 T C HELB Silent p.F941F 0.62 TCGA-FS-A1ZD-06 12 9360928 9360928 C T PZP Missense_Mutation p.D4N 0.36 tolerated(1) benign(0.039) TCGA-FS-A1ZD-06 13 100635129 100635129 A C ZIC2 Missense_Mutation p.K271Q 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-FS-A1ZD-06 13 103419826 103419826 G A TEX30 Missense_Mutation p.R101C 0.72 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 13 113999256 113999256 C T GRTP1 Missense_Mutation p.G162R 0.55 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 13 20641482 20641482 G T ZMYM2 Missense_Mutation p.E1135D 0.35 deleterious(0.03) possibly_damaging(0.604) TCGA-FS-A1ZD-06 13 20796916 20796916 G A GJB6 Missense_Mutation p.A235V 0.38 tolerated(0.4) benign(0.001) TCGA-FS-A1ZD-06 13 31232917 31232917 G A USPL1 Silent p.K901K 0.21 TCGA-FS-A1ZD-06 13 32813472 32813472 G A FRY Missense_Mutation p.E2168K 0.53 tolerated(0.08) possibly_damaging(0.806) TCGA-FS-A1ZD-06 13 40251631 40251631 T C COG6 Missense_Mutation p.V152A 0.32 tolerated(0.07) benign(0.097) TCGA-FS-A1ZD-06 13 86369000 86369000 G A SLITRK6 Silent p.S548S 0.60 TCGA-FS-A1ZD-06 14 101531680 101531680 G A MIR409 RNA 0.44 TCGA-FS-A1ZD-06 14 102452896 102452896 C T DYNC1H1 Silent p.A778A 0.56 TCGA-FS-A1ZD-06 14 105241328 105241328 G A AKT1 Missense_Mutation p.H194Y 0.62 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZD-06 14 105241329 105241329 G A AKT1 Silent p.A193A 0.62 TCGA-FS-A1ZD-06 14 20248980 20248980 C T OR4M1 Missense_Mutation p.P167S 0.33 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZD-06 14 20403845 20403845 C T OR4K1 Missense_Mutation p.S7L 0.13 deleterious(0) possibly_damaging(0.604) TCGA-FS-A1ZD-06 14 23000893 23000893 G A TRAJ12 Missense_Mutation p.M2I 0.56 unknown(0) TCGA-FS-A1ZD-06 14 23847927 23847927 C T CMTM5 Intron 0.25 TCGA-FS-A1ZD-06 14 24709293 24709293 C T TINF2 Missense_Mutation p.E400K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-FS-A1ZD-06 14 38293143 38293143 G A TTC6 Missense_Mutation p.S1652N 0.62 tolerated(1) probably_damaging(0.986) TCGA-FS-A1ZD-06 14 70990899 70990899 G A ADAM20 Silent p.F242F 0.52 TCGA-FS-A1ZD-06 14 74961672 74961672 C T ISCA2 Missense_Mutation p.S145F 0.48 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZD-06 14 89131701 89131701 G A EML5 Missense_Mutation p.S1086L 0.62 deleterious(0.01) probably_damaging(0.923) TCGA-FS-A1ZD-06 14 96730324 96730324 A G BDKRB1 Missense_Mutation p.N102S 0.57 tolerated(0.06) benign(0.094) TCGA-FS-A1ZD-06 15 25476051 25476051 G A SNORD115-33 RNA 0.37 TCGA-FS-A1ZD-06 15 28366576 28366576 C T HERC2 Splice_Site p.X4397_splice 0.53 TCGA-FS-A1ZD-06 15 34080580 34080580 A C RYR3 Missense_Mutation p.I3251L 0.41 possibly_damaging(0.841) TCGA-FS-A1ZD-06 15 40293202 40293202 C T EIF2AK4 Missense_Mutation p.S979F 0.40 deleterious(0.03) benign(0.312) TCGA-FS-A1ZD-06 15 44087630 44087630 G A SERINC4 Silent p.F433F 0.48 TCGA-FS-A1ZD-06 15 45562453 45562453 G A SLC28A2 Missense_Mutation p.G543R 0.44 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZD-06 15 74426504 74426504 A G ISLR2 Missense_Mutation p.N470S 0.45 tolerated(0.14) probably_damaging(0.97) TCGA-FS-A1ZD-06 15 78922068 78922068 A C CHRNB4 Missense_Mutation p.D193E 0.43 tolerated(0.11) probably_damaging(0.994) TCGA-FS-A1ZD-06 15 82520603 82520603 C T EFTUD1 Missense_Mutation p.R333Q 0.39 deleterious(0.03) possibly_damaging(0.764) TCGA-FS-A1ZD-06 15 83451553 83451553 G A FSD2 Silent p.F320F 0.39 TCGA-FS-A1ZD-06 15 85657248 85657248 C T PDE8A Missense_Mutation p.L444F 0.44 tolerated(0.05) probably_damaging(0.999) TCGA-FS-A1ZD-06 15 90280818 90280818 C T WDR93 Silent p.S541S 0.48 TCGA-FS-A1ZD-06 15 93444495 93444497 GAG - CHD2 In_Frame_Del p.E11del 0.53 TCGA-FS-A1ZD-06 16 14341258 14341258 C T MKL2 Intron 0.59 TCGA-FS-A1ZD-06 16 21098222 21098222 G A DNAH3 Missense_Mutation p.P942L 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 16 2140133 2140133 G A PKD1 Silent p.S4169S 0.29 TCGA-FS-A1ZD-06 16 4310169 4310169 G A TFAP4 Silent p.I248I 0.62 TCGA-FS-A1ZD-06 16 49411676 49411676 G A C16orf78 Missense_Mutation p.R62Q 0.65 tolerated(0.51) benign(0.015) TCGA-FS-A1ZD-06 16 5123177 5123177 G A ALG1 Missense_Mutation p.G104R 0.34 deleterious(0.02) possibly_damaging(0.576) TCGA-FS-A1ZD-06 16 53515595 53515595 C A RBL2 Missense_Mutation p.P1033T 0.10 deleterious(0) benign(0.097) TCGA-FS-A1ZD-06 16 56396659 56396659 G A AMFR 3'UTR 0.16 TCGA-FS-A1ZD-06 16 64984767 64984767 C A CDH11 Silent p.G599G 0.34 TCGA-FS-A1ZD-06 16 67694194 67694194 G A ACD Missense_Mutation p.P63L 0.71 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-FS-A1ZD-06 16 70572248 70572248 G A SF3B3 Missense_Mutation p.R283K 0.26 tolerated(0.06) possibly_damaging(0.791) TCGA-FS-A1ZD-06 16 81249940 81249940 G A PKD1L2 Missense_Mutation p.P125S 0.31 tolerated(0.59) benign(0.041) TCGA-FS-A1ZD-06 16 81249941 81249941 G A PKD1L2 Silent p.A124A 0.31 TCGA-FS-A1ZD-06 16 89348234 89348234 G A ANKRD11 Silent p.L1572L 0.28 TCGA-FS-A1ZD-06 17 10319023 10319023 G A MYH8 Nonsense_Mutation p.R172* 0.66 TCGA-FS-A1ZD-06 17 1674330 1674330 G A SERPINF1 Silent p.E97E 0.45 TCGA-FS-A1ZD-06 17 177278 177278 C T RPH3AL Silent p.R19R 0.34 TCGA-FS-A1ZD-06 17 2995663 2995663 G A OR1D2 Missense_Mutation p.P210S 0.46 deleterious(0.01) benign(0.364) TCGA-FS-A1ZD-06 17 2995982 2995982 G A OR1D2 Silent p.F103F 0.50 TCGA-FS-A1ZD-06 17 3030271 3030271 G A OR1G1 Missense_Mutation p.P192L 0.50 deleterious(0) benign(0.26) TCGA-FS-A1ZD-06 17 38062460 38062460 G A GSDMB Silent p.V264V 0.41 TCGA-FS-A1ZD-06 17 38635928 38635928 C T TNS4 Silent p.R636R 0.35 TCGA-FS-A1ZD-06 17 38635929 38635929 C T TNS4 Missense_Mutation p.R636K 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZD-06 17 38906748 38906748 G A KRT25 Silent p.H353H 0.46 TCGA-FS-A1ZD-06 17 4644204 4644204 G A ZMYND15 Missense_Mutation p.E121K 0.44 deleterious_low_confidence(0.01) benign(0.167) TCGA-FS-A1ZD-06 17 68128418 68128418 A C KCNJ16 Missense_Mutation p.T64P 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 17 74041436 74041436 A - SRP68 Frame_Shift_Del p.L444* 0.27 TCGA-FS-A1ZD-06 17 79876028 79876028 C T SIRT7 5'UTR 0.28 TCGA-FS-A1ZD-06 17 80788605 80788605 C T ZNF750 Missense_Mutation p.E529K 0.50 tolerated(0.74) benign(0.001) TCGA-FS-A1ZD-06 18 12254374 12254374 A G CIDEA 5'UTR 0.36 TCGA-FS-A1ZD-06 18 14184233 14184233 G A ANKRD20A5P Intron 0.60 TCGA-FS-A1ZD-06 18 33795660 33795660 G A MOCOS Missense_Mutation p.G506E 0.37 tolerated(1) benign(0.001) TCGA-FS-A1ZD-06 18 42530952 42530952 C T SETBP1 Silent p.A549A 0.32 TCGA-FS-A1ZD-06 18 42533292 42533292 C T SETBP1 Silent p.S1329S 0.34 TCGA-FS-A1ZD-06 18 45556242 45556242 C T ZBTB7C Missense_Mutation p.E417K 0.50 deleterious(0) benign(0.435) TCGA-FS-A1ZD-06 18 72245505 72245505 A G CNDP1 Missense_Mutation p.I370M 0.52 deleterious(0.01) benign(0.238) TCGA-FS-A1ZD-06 19 13063580 13063580 G T RAD23A Silent p.V297V 0.24 TCGA-FS-A1ZD-06 19 17416636 17416636 C T MRPL34 5'UTR 0.43 TCGA-FS-A1ZD-06 19 17571378 17571378 G A NXNL1 Silent p.L101L 0.47 TCGA-FS-A1ZD-06 19 17648261 17648261 C T FAM129C Silent p.F199F 0.42 TCGA-FS-A1ZD-06 19 23542295 23542295 G A ZNF91 Silent p.I1162I 0.39 TCGA-FS-A1ZD-06 19 36593925 36593925 C T WDR62 Silent p.G1137G 0.44 TCGA-FS-A1ZD-06 19 40480235 40480235 C T PSMC4 Silent p.I119I 0.40 TCGA-FS-A1ZD-06 19 42085674 42085674 A G CEACAM21 Intron 0.42 TCGA-FS-A1ZD-06 19 43406437 43406437 A C PSG6 3'Flank 0.42 TCGA-FS-A1ZD-06 19 44131417 44131417 T A CADM4 Missense_Mutation p.I89F 0.30 deleterious(0) possibly_damaging(0.741) TCGA-FS-A1ZD-06 19 45394827 45394827 G A TOMM40 Missense_Mutation p.R52Q 0.46 tolerated(0.67) unknown(0) TCGA-FS-A1ZD-06 19 47844173 47844173 C T C5AR2 Silent p.L39L 0.45 TCGA-FS-A1ZD-06 19 50099247 50099247 C T PRR12 Missense_Mutation p.S552F 0.55 possibly_damaging(0.683) TCGA-FS-A1ZD-06 19 50209210 50209210 C T CPT1C Missense_Mutation p.H337Y 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZD-06 19 50958811 50958811 G A MYBPC2 Missense_Mutation p.D750N 0.33 deleterious(0.02) possibly_damaging(0.521) TCGA-FS-A1ZD-06 19 51856511 51856511 C T ETFB Missense_Mutation p.D175N 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 19 52909821 52909821 C T ZNF528 Missense_Mutation p.P66S 0.52 tolerated(0.78) probably_damaging(0.937) TCGA-FS-A1ZD-06 19 53269225 53269225 G A ZNF600 Missense_Mutation p.S595L 0.42 deleterious(0.02) benign(0.056) TCGA-FS-A1ZD-06 19 54312870 54312870 G A NLRP12 Silent p.S681S 0.41 TCGA-FS-A1ZD-06 19 57293402 57293402 C T ZIM2 Missense_Mutation p.E189K 0.46 deleterious(0) probably_damaging(0.913) TCGA-FS-A1ZD-06 19 9362107 9362107 G A OR7E24 Missense_Mutation p.D130N 0.37 tolerated(0.22) benign(0.03) TCGA-FS-A1ZD-06 1 110033883 110033883 G A ATXN7L2 Silent p.E566E 0.55 TCGA-FS-A1ZD-06 1 114483004 114483004 G T HIPK1 Intron 0.24 TCGA-FS-A1ZD-06 1 119923791 119923791 G A HAO2 Missense_Mutation p.G28E 0.32 deleterious(0.03) possibly_damaging(0.658) TCGA-FS-A1ZD-06 1 120342418 120342418 G A REG4 Missense_Mutation p.T78I 0.31 tolerated(1) benign(0.014) TCGA-FS-A1ZD-06 1 120458415 120458415 G A NOTCH2 Silent p.I2310I 0.29 TCGA-FS-A1ZD-06 1 120497814 120497814 G A NOTCH2 Missense_Mutation p.P690S 0.62 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 1 12939629 12939629 G A PRAMEF4 Silent p.P391P 0.52 TCGA-FS-A1ZD-06 1 146658801 146658801 G A FMO5 Missense_Mutation p.T427I 0.76 tolerated(0.11) possibly_damaging(0.824) TCGA-FS-A1ZD-06 1 150601982 150601982 G A ENSA 5'UTR 0.26 TCGA-FS-A1ZD-06 1 153665653 153665653 C T NPR1 Nonsense_Mutation p.R1035* 0.30 TCGA-FS-A1ZD-06 1 157545271 157545271 G A FCRL4 3'UTR 0.38 TCGA-FS-A1ZD-06 1 159505705 159505705 G A OR10J5 Silent p.F31F 0.32 TCGA-FS-A1ZD-06 1 159827671 159827671 G A VSIG8 Silent p.G172G 0.72 TCGA-FS-A1ZD-06 1 17720899 17720899 G A PADI6 RNA 0.31 TCGA-FS-A1ZD-06 1 201113056 201113056 G A TMEM9 Silent p.S97S 0.11 TCGA-FS-A1ZD-06 1 204588493 204588493 G A LRRN2 Missense_Mutation p.R210W 0.40 deleterious(0) probably_damaging(0.965) TCGA-FS-A1ZD-06 1 206619607 206619607 C T SRGAP2 Silent p.G601G 0.51 TCGA-FS-A1ZD-06 1 206619608 206619608 C T SRGAP2 Missense_Mutation p.P602S 0.51 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 1 207648498 207648498 C T CR2 Missense_Mutation p.R885C 0.79 tolerated(0.12) possibly_damaging(0.827) TCGA-FS-A1ZD-06 1 211545968 211545968 C T TRAF5 Missense_Mutation p.A533V 0.22 tolerated(0.14) benign(0.001) TCGA-FS-A1ZD-06 1 213032489 213032489 A C FLVCR1 Missense_Mutation p.K232T 0.24 tolerated(0.22) benign(0.021) TCGA-FS-A1ZD-06 1 220440806 220440806 C T RAB3GAP2 Intron 0.33 TCGA-FS-A1ZD-06 1 223438040 223438040 G T SUSD4 Missense_Mutation p.S219Y 0.52 deleterious(0.01) possibly_damaging(0.73) TCGA-FS-A1ZD-06 1 223986192 223986192 C T TP53BP2 Missense_Mutation p.R558K 0.32 tolerated(0.2) benign(0.159) TCGA-FS-A1ZD-06 1 228476516 228476516 G T OBSCN Silent p.L3851L 0.38 TCGA-FS-A1ZD-06 1 22927916 22927916 C T EPHA8 Silent p.F951F 0.33 TCGA-FS-A1ZD-06 1 240341256 240341256 A G FMN2 Silent p.Q606Q 0.71 TCGA-FS-A1ZD-06 1 247902192 247902192 C T OR14K1 Silent p.F92F 0.66 TCGA-FS-A1ZD-06 1 26873441 26873441 C T RPS6KA1 Silent p.L73L 0.61 TCGA-FS-A1ZD-06 1 32280643 32280643 G A SPOCD1 Missense_Mutation p.P98S 0.57 tolerated(0.09) benign(0.031) TCGA-FS-A1ZD-06 1 36315797 36315797 G A AGO4 Missense_Mutation p.D739N 0.55 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZD-06 1 39835860 39835860 T C MACF1 Splice_Site p.X2303_splice 0.62 TCGA-FS-A1ZD-06 1 40929140 40929140 G A ZFP69B Missense_Mutation p.R495K 0.67 tolerated(0.29) possibly_damaging(0.84) TCGA-FS-A1ZD-06 1 45506071 45506071 C T ZSWIM5 Silent p.Q583Q 0.54 TCGA-FS-A1ZD-06 1 62672641 62672641 G A L1TD1 Missense_Mutation p.G114E 0.51 tolerated(0.16) unknown(0) TCGA-FS-A1ZD-06 1 7863183 7863183 C T PER3 Missense_Mutation p.R316C 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-FS-A1ZD-06 1 95609521 95609521 C T TMEM56 Missense_Mutation p.L22F 0.30 tolerated(0.19) benign(0.011) TCGA-FS-A1ZD-06 20 13695681 13695681 C T ESF1 Missense_Mutation p.R799Q 0.32 tolerated(1) benign(0.001) TCGA-FS-A1ZD-06 20 24565606 24565606 G A SYNDIG1 Missense_Mutation p.A199T 0.50 deleterious(0) probably_damaging(0.97) TCGA-FS-A1ZD-06 20 33583241 33583241 G A MYH7B Missense_Mutation p.D977N 0.42 probably_damaging(0.983) TCGA-FS-A1ZD-06 20 35177484 35177484 C T MYL9 Silent p.F117F 0.58 TCGA-FS-A1ZD-06 20 40757431 40757431 T G PTPRT Missense_Mutation p.D937A 0.38 deleterious(0) possibly_damaging(0.449) TCGA-FS-A1ZD-06 20 44452684 44452684 C T TNNC2 Missense_Mutation p.E133K 0.49 tolerated(0.1) benign(0.029) TCGA-FS-A1ZD-06 20 58457220 58457220 C T SYCP2 Missense_Mutation p.E844K 0.48 deleterious(0.02) possibly_damaging(0.678) TCGA-FS-A1ZD-06 20 60882796 60882796 C T ADRM1 Silent p.A256A 0.42 TCGA-FS-A1ZD-06 20 61537178 61537178 G A DIDO1 Intron 0.46 TCGA-FS-A1ZD-06 20 9525015 9525015 C T PAK7 Splice_Site p.X623_splice 0.49 TCGA-FS-A1ZD-06 21 10951367 10951367 G A TPTE Silent p.F115F 0.30 TCGA-FS-A1ZD-06 21 32127550 32127550 A G KRTAP21-1 Silent p.G49G 0.41 TCGA-FS-A1ZD-06 21 39672317 39672317 G A KCNJ15 3'UTR 0.47 TCGA-FS-A1ZD-06 22 30886109 30886109 G A SEC14L4 Silent p.P402P 0.44 TCGA-FS-A1ZD-06 22 36698686 36698686 C T MYH9 Missense_Mutation p.M809I 0.49 benign(0.005) TCGA-FS-A1ZD-06 22 37769437 37769437 G A ELFN2 Missense_Mutation p.P713L 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 22 38120387 38120387 C T TRIOBP Silent p.P608P 0.34 TCGA-FS-A1ZD-06 22 38474296 38474296 G A SLC16A8 3'UTR 0.55 TCGA-FS-A1ZD-06 22 38696771 38696771 C T CSNK1E Missense_Mutation p.G175S 0.46 deleterious_low_confidence(0) benign(0.272) TCGA-FS-A1ZD-06 22 39418954 39418954 C T APOBEC3D Missense_Mutation p.L49F 0.42 tolerated(0.72) benign(0.003) TCGA-FS-A1ZD-06 22 42335114 42335114 C T CENPM Silent p.L163L 0.44 TCGA-FS-A1ZD-06 22 43579110 43579110 C T TTLL12 Missense_Mutation p.V75I 0.42 tolerated(0.45) benign(0.028) TCGA-FS-A1ZD-06 2 100058829 100058829 C T REV1 Silent p.E151E 0.47 TCGA-FS-A1ZD-06 2 113147761 113147761 C T RGPD8 Missense_Mutation p.G921R 0.38 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZD-06 2 113325561 113325561 A G POLR1B Silent p.R588R 0.37 TCGA-FS-A1ZD-06 2 133542936 133542936 G A NCKAP5 Missense_Mutation p.S483F 0.47 deleterious(0.02) benign(0.077) TCGA-FS-A1ZD-06 2 135884211 135884211 C T RAB3GAP1 Missense_Mutation p.P320S 0.45 deleterious(0.04) probably_damaging(0.973) TCGA-FS-A1ZD-06 2 136519433 136519433 G A UBXN4 Missense_Mutation p.G185E 0.29 tolerated(1) benign(0) TCGA-FS-A1ZD-06 2 152273114 152273114 C T RIF1 Missense_Mutation p.T107I 0.47 tolerated(1) benign(0.001) TCGA-FS-A1ZD-06 2 152507246 152507246 A T NEB Missense_Mutation p.F2357I 0.45 possibly_damaging(0.77) TCGA-FS-A1ZD-06 2 152525626 152525626 C T NEB Missense_Mutation p.G1509E 0.25 probably_damaging(1) TCGA-FS-A1ZD-06 2 153520278 153520278 C T PRPF40A Missense_Mutation p.G660E 0.37 tolerated(0.08) probably_damaging(0.931) TCGA-FS-A1ZD-06 2 15735288 15735288 G A DDX1 Silent p.E12E 0.41 TCGA-FS-A1ZD-06 2 163292066 163292066 G A KCNH7 Silent p.L532L 0.46 TCGA-FS-A1ZD-06 2 170032974 170032974 G A LRP2 Silent p.T3506T 0.44 TCGA-FS-A1ZD-06 2 175268966 175268966 C T SCRN3 Missense_Mutation p.S226F 0.52 deleterious(0) possibly_damaging(0.534) TCGA-FS-A1ZD-06 2 179477898 179477898 C T TTN Silent p.K16546K 0.43 TCGA-FS-A1ZD-06 2 179611971 179611971 G A TTN Intron 0.38 TCGA-FS-A1ZD-06 2 191941042 191941042 G A STAT4 Missense_Mutation p.H95Y 0.46 tolerated(0.06) possibly_damaging(0.703) TCGA-FS-A1ZD-06 2 223436631 223436631 G A FARSB Missense_Mutation p.P577S 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A1ZD-06 2 224462334 224462334 G A SCG2 Missense_Mutation p.S556F 0.45 tolerated(0.08) probably_damaging(0.963) TCGA-FS-A1ZD-06 2 233899088 233899088 C T NEU2 Missense_Mutation p.S155F 0.36 deleterious(0) benign(0.437) TCGA-FS-A1ZD-06 2 234749335 234749335 G A HJURP Silent p.S697S 0.43 TCGA-FS-A1ZD-06 2 235951888 235951888 G A SH3BP4 Silent p.V825V 0.44 TCGA-FS-A1ZD-06 2 242756224 242756224 G A NEU4 Missense_Mutation p.V126M 0.38 tolerated(0.1) possibly_damaging(0.524) TCGA-FS-A1ZD-06 2 27804224 27804224 G A C2orf16 Silent p.R1595R 0.43 TCGA-FS-A1ZD-06 2 37543442 37543442 C T PRKD3 Missense_Mutation p.E76K 0.31 tolerated(0.44) benign(0.007) TCGA-FS-A1ZD-06 2 39088480 39088480 G A DHX57 Nonsense_Mutation p.R358* 0.43 TCGA-FS-A1ZD-06 2 43819134 43819134 A C THADA Missense_Mutation p.V43G 0.42 tolerated(0.06) benign(0.013) TCGA-FS-A1ZD-06 2 44203350 44203350 C T LRPPRC Missense_Mutation p.M223I 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 2 69049478 69049478 G C ARHGAP25 Missense_Mutation p.D403H 0.36 tolerated(0.08) benign(0.104) TCGA-FS-A1ZD-06 2 86711207 86711207 T C KDM3A Missense_Mutation p.V1007A 0.44 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZD-06 2 99988138 99988138 G A EIF5B Silent p.E499E 0.43 TCGA-FS-A1ZD-06 3 108572727 108572727 G A TRAT1 3'UTR 0.21 TCGA-FS-A1ZD-06 3 108723684 108723684 C T MORC1 Missense_Mutation p.G689R 0.53 tolerated_low_confidence(0.74) benign(0.001) TCGA-FS-A1ZD-06 3 112299671 112299671 T C SLC35A5 Missense_Mutation p.I236T 0.51 deleterious(0.01) probably_damaging(0.93) TCGA-FS-A1ZD-06 3 11888128 11888128 G A TAMM41 5'UTR 0.21 TCGA-FS-A1ZD-06 3 123367904 123367904 C T MYLK Silent p.K1443K 0.35 TCGA-FS-A1ZD-06 3 130318624 130318624 C T COL6A6 Silent p.P1541P 0.30 TCGA-FS-A1ZD-06 3 134250777 134250777 G A CEP63 Missense_Mutation p.E105K 0.26 deleterious(0) possibly_damaging(0.708) TCGA-FS-A1ZD-06 3 141497499 141497499 T G GRK7 Missense_Mutation p.F125V 0.52 tolerated(0.25) probably_damaging(0.948) TCGA-FS-A1ZD-06 3 150690318 150690318 C T CLRN1 Missense_Mutation p.E60K 0.55 tolerated(0.07) benign(0.169) TCGA-FS-A1ZD-06 3 154834527 154834527 G A MME Missense_Mutation p.E172K 0.30 tolerated(0.07) benign(0.014) TCGA-FS-A1ZD-06 3 168834174 168834174 G A MECOM Missense_Mutation p.P373S 0.19 tolerated(0.07) possibly_damaging(0.612) TCGA-FS-A1ZD-06 3 173998987 173998987 C T NLGN1 Missense_Mutation p.P789L 0.53 tolerated_low_confidence(0.19) benign(0.3) TCGA-FS-A1ZD-06 3 183903939 183903939 G A ABCF3 5'UTR 0.64 TCGA-FS-A1ZD-06 3 186504488 186504488 A G EIF4A2 Intron 0.30 TCGA-FS-A1ZD-06 3 195984731 195984731 C T PCYT1A Missense_Mutation p.D49N 0.34 tolerated(0.06) benign(0.004) TCGA-FS-A1ZD-06 3 196381500 196381500 C T NRROS Silent p.S30S 0.25 TCGA-FS-A1ZD-06 3 32587396 32587396 C T DYNC1LI1 Silent p.K94K 0.24 TCGA-FS-A1ZD-06 3 447292 447292 C A CHL1 Missense_Mutation p.F1191L 0.75 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 3 45879463 45879463 T A LZTFL1 Missense_Mutation p.R28S 0.63 tolerated(0.11) benign(0.209) TCGA-FS-A1ZD-06 3 52549479 52549479 C T STAB1 Missense_Mutation p.S1302F 0.29 tolerated(0.1) possibly_damaging(0.541) TCGA-FS-A1ZD-06 3 52727560 52727560 G A GNL3 Missense_Mutation p.A442T 0.25 deleterious(0.03) benign(0.078) TCGA-FS-A1ZD-06 3 52857968 52857968 G A ITIH4 Silent p.G408G 0.49 TCGA-FS-A1ZD-06 3 63973962 63973962 A T ATXN7 Silent p.V441V 0.30 TCGA-FS-A1ZD-06 3 97806585 97806585 C T OR5AC2 Missense_Mutation p.S190L 0.30 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZD-06 4 118975867 118975867 C T NDST3 Nonsense_Mutation p.Q268* 0.36 TCGA-FS-A1ZD-06 4 144797993 144797993 T C GYPE Missense_Mutation p.N51S 0.50 tolerated_low_confidence(0.64) possibly_damaging(0.486) TCGA-FS-A1ZD-06 4 167022056 167022056 G A TLL1 3'UTR 0.25 TCGA-FS-A1ZD-06 4 170610194 170610194 G A CLCN3 Missense_Mutation p.G140E 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 4 170650819 170650819 A G C4orf27 Silent p.Y317Y 0.32 TCGA-FS-A1ZD-06 4 178352882 178352882 C T AGA Missense_Mutation p.E341K 0.55 tolerated(0.22) benign(0.011) TCGA-FS-A1ZD-06 4 3318359 3318359 G A RGS12 Silent p.P154P 0.21 TCGA-FS-A1ZD-06 4 39876033 39876033 C T PDS5A Splice_Site p.X718_splice 0.48 TCGA-FS-A1ZD-06 4 70715154 70715154 C T SULT1E1 Splice_Site p.X166_splice 0.28 TCGA-FS-A1ZD-06 4 80329315 80329315 C T GK2 Missense_Mutation p.G14R 0.32 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZD-06 4 88048236 88048236 C T AFF1 Missense_Mutation p.S957F 0.63 deleterious(0.02) unknown(0) TCGA-FS-A1ZD-06 4 89034569 89034569 C T ABCG2 Silent p.K360K 0.57 TCGA-FS-A1ZD-06 4 90169055 90169055 G A GPRIN3 Missense_Mutation p.S736F 0.37 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZD-06 5 1034434 1034434 G A NKD2 Missense_Mutation p.V139I 0.45 deleterious(0.02) benign(0.046) TCGA-FS-A1ZD-06 5 1201811 1201811 C T SLC6A19 Missense_Mutation p.P16S 0.41 tolerated(0.11) benign(0.341) TCGA-FS-A1ZD-06 5 134190754 134190754 G A C5orf24 Missense_Mutation p.R55K 0.31 tolerated_low_confidence(0.46) benign(0.005) TCGA-FS-A1ZD-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.40 benign(0) TCGA-FS-A1ZD-06 5 13780959 13780959 G A DNAH5 Missense_Mutation p.S2977F 0.33 benign(0) TCGA-FS-A1ZD-06 5 140201883 140201883 G A PCDHA5 Missense_Mutation p.E175K 0.83 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-FS-A1ZD-06 5 140537734 140537734 G A PCDHB17 3'UTR 0.91 TCGA-FS-A1ZD-06 5 140682478 140682478 A G SLC25A2 3'UTR 0.89 TCGA-FS-A1ZD-06 5 140801371 140801371 C T PCDHGA11 Missense_Mutation p.P193S 0.67 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-FS-A1ZD-06 5 145826961 145826961 G A TCERG1 Missense_Mutation p.G17R 0.39 deleterious_low_confidence(0.01) benign(0.02) TCGA-FS-A1ZD-06 5 145826962 145826962 G A TCERG1 Missense_Mutation p.G17E 0.44 deleterious_low_confidence(0.02) benign(0.02) TCGA-FS-A1ZD-06 5 149216399 149216400 - CAG PPARGC1B In_Frame_Ins p.S799dup 0.54 TCGA-FS-A1ZD-06 5 176308021 176308021 C T HK3 3'UTR 0.21 TCGA-FS-A1ZD-06 5 176309021 176309021 C T HK3 Missense_Mutation p.D721N 0.63 tolerated(1) benign(0.276) TCGA-FS-A1ZD-06 5 176940758 176940758 G C DDX41 Silent p.A342A 0.13 TCGA-FS-A1ZD-06 5 32780897 32780897 C T NPR3 Missense_Mutation p.T422I 0.37 deleterious(0.04) possibly_damaging(0.89) TCGA-FS-A1ZD-06 5 35654808 35654808 A C SPEF2 Missense_Mutation p.I320L 0.42 tolerated(0.1) probably_damaging(0.949) TCGA-FS-A1ZD-06 5 41000352 41000352 C T MROH2B Silent p.R1484R 0.42 TCGA-FS-A1ZD-06 5 56219569 56219569 G A MIER3 Missense_Mutation p.P381S 0.64 tolerated(0.1) benign(0.318) TCGA-FS-A1ZD-06 5 68412402 68412402 G A SLC30A5 Silent p.Q418Q 0.73 TCGA-FS-A1ZD-06 5 82837738 82837738 A C VCAN Silent p.T2972T 0.49 TCGA-FS-A1ZD-06 5 90040914 90040914 C T GPR98 Missense_Mutation p.S3534L 0.21 benign(0) TCGA-FS-A1ZD-06 6 117113302 117113302 T G GPRC6A 3'UTR 0.84 TCGA-FS-A1ZD-06 6 136597050 136597050 A T BCLAF1 Missense_Mutation p.I538K 0.18 tolerated(0.12) possibly_damaging(0.506) TCGA-FS-A1ZD-06 6 157713975 157713975 G A TMEM242 Silent p.S128S 0.92 TCGA-FS-A1ZD-06 6 29394760 29394760 G A OR11A1 Missense_Mutation p.A220V 0.58 tolerated(1) benign(0.004) TCGA-FS-A1ZD-06 6 46800919 46800919 G A MEP1A Missense_Mutation p.G418E 0.45 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZD-06 6 53706942 53706942 G A LRRC1 Missense_Mutation p.G65E 0.25 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZD-06 6 54804969 54804969 C T FAM83B Silent p.L400L 0.61 TCGA-FS-A1ZD-06 6 54804970 54804970 C T FAM83B Silent p.L401L 0.60 TCGA-FS-A1ZD-06 6 74493476 74493476 A T CD109 Missense_Mutation p.T718S 0.66 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZD-06 6 74493477 74493477 C T CD109 Missense_Mutation p.T718I 0.65 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZD-06 7 117424487 117424487 G A CTTNBP2 Missense_Mutation p.P697L 0.95 deleterious(0) possibly_damaging(0.559) TCGA-FS-A1ZD-06 7 138554416 138554416 G A KIAA1549 Missense_Mutation p.P1548L 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZD-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.93 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZD-06 7 141490305 141490305 C T TAS2R5 Silent p.I48I 0.93 TCGA-FS-A1ZD-06 7 88962967 88962967 C T ZNF804B Missense_Mutation p.S224F 0.35 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 7 92732256 92732256 G A SAMD9 Missense_Mutation p.S1052F 0.33 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZD-06 8 101300197 101300197 G A RNF19A Missense_Mutation p.S69F 0.42 deleterious_low_confidence(0.02) benign(0.006) TCGA-FS-A1ZD-06 8 110631220 110631220 G A SYBU Missense_Mutation p.P93L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZD-06 8 116616406 116616406 G A TRPS1 Missense_Mutation p.P597L 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZD-06 8 11996079 11996079 G A USP17L2 Missense_Mutation p.P64L 0.24 deleterious(0.03) benign(0.102) TCGA-FS-A1ZD-06 8 131859707 131859707 G A ADCY8 Missense_Mutation p.S822F 0.29 deleterious(0.01) benign(0.089) TCGA-FS-A1ZD-06 8 133141683 133141683 A T KCNQ3 Missense_Mutation p.D815E 0.39 tolerated(0.19) benign(0.057) TCGA-FS-A1ZD-06 8 133669119 133669119 C T LRRC6 Silent p.L71L 0.17 TCGA-FS-A1ZD-06 8 134144060 134144060 G A TG Missense_Mutation p.E2623K 0.40 deleterious(0.01) benign(0.21) TCGA-FS-A1ZD-06 8 1581039 1581039 C T DLGAP2 Missense_Mutation p.S466F 0.73 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZD-06 8 24350737 24350737 G A ADAM7 Missense_Mutation p.G613R 0.36 tolerated(0.08) possibly_damaging(0.856) TCGA-FS-A1ZD-06 8 53569134 53569134 C T RB1CC1 Silent p.Q1085Q 0.40 TCGA-FS-A1ZD-06 8 55538985 55538985 G A RP1 Missense_Mutation p.R848K 0.47 tolerated(0.3) benign(0.015) TCGA-FS-A1ZD-06 8 76465432 76465432 G A HNF4G Silent p.Q205Q 0.38 TCGA-FS-A1ZD-06 9 107367708 107367708 G A OR13C2 Silent p.S67S 0.56 TCGA-FS-A1ZD-06 9 125146022 125146022 C T PTGS1 Missense_Mutation p.L333F 0.43 deleterious(0.01) possibly_damaging(0.596) TCGA-FS-A1ZD-06 9 125154831 125154831 G A PTGS1 3'UTR 0.60 TCGA-FS-A1ZD-06 9 125273649 125273649 C T OR1J2 Missense_Mutation p.S190L 0.54 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FS-A1ZD-06 9 130269197 130269197 A T FAM129B Missense_Mutation p.V723E 0.37 tolerated_low_confidence(0.1) benign(0.035) TCGA-FS-A1ZD-06 9 130270444 130270444 C T FAM129B Silent p.R490R 0.53 TCGA-FS-A1ZD-06 9 138517996 138517996 C T GLT6D1 Missense_Mutation p.G59E 0.46 deleterious(0.01) possibly_damaging(0.814) TCGA-FS-A1ZD-06 9 140059753 140059753 G A GRIN1 Intron 0.47 TCGA-FS-A1ZD-06 9 140059754 140059754 G A GRIN1 Intron 0.44 TCGA-FS-A1ZD-06 9 140809147 140809147 C T CACNA1B Missense_Mutation p.P222S 0.50 deleterious(0) benign(0.117) TCGA-FS-A1ZD-06 9 14120611 14120611 C T NFIB Missense_Mutation p.R358Q 0.83 tolerated(0.06) probably_damaging(0.986) TCGA-FS-A1ZD-06 9 74300017 74300017 G A TMEM2 3'UTR 0.48 TCGA-FS-A1ZD-06 9 75403334 75403334 G A TMC1 Missense_Mutation p.D322N 0.41 deleterious(0) probably_damaging(0.945) TCGA-FS-A1ZD-06 9 8338947 8338947 C T PTPRD Missense_Mutation p.R1785K 0.86 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZD-06 9 91077425 91077425 G T SPIN1 Missense_Mutation p.S39I 0.36 deleterious(0.02) benign(0.352) TCGA-FS-A1ZD-06 9 96051722 96051722 G A WNK2 Silent p.Q1599Q 0.68 TCGA-FS-A1ZD-06 X 120009363 120009363 G A CT47B1 Silent p.V54V 0.85 TCGA-FS-A1ZD-06 X 122599574 122599574 G A GRIA3 Missense_Mutation p.D792N 0.90 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZD-06 X 127186092 127186092 G A ACTRT1 Missense_Mutation p.R32C 0.85 deleterious(0.02) benign(0.293) TCGA-FS-A1ZD-06 X 140994617 140994617 C T MAGEC1 Missense_Mutation p.S476F 0.91 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FS-A1ZD-06 X 48762211 48762211 G A SLC35A2 Silent p.A325A 0.69 TCGA-FS-A1ZD-06 X 73071669 73071669 C T XIST RNA 0.85 TCGA-FS-A1ZD-06 X 73962468 73962468 G T KIAA2022 Missense_Mutation p.P642T 0.83 tolerated(0.14) benign(0.075) TCGA-FS-A1ZD-06 X 83128980 83128980 G A CYLC1 Missense_Mutation p.E422K 0.93 tolerated(0.83) unknown(0) TCGA-FS-A1ZD-06 X 84526439 84526439 C T ZNF711 Missense_Mutation p.P631S 1.00 deleterious(0.04) probably_damaging(0.955) TCGA-FS-A1ZE-06 10 115489393 115489393 G A CASP7 3'UTR 0.43 TCGA-FS-A1ZE-06 10 24508690 24508690 T C KIAA1217 Missense_Mutation p.L69P 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZE-06 10 28270414 28270414 G A ARMC4 Missense_Mutation p.S306L 0.42 tolerated(0.08) benign(0.002) TCGA-FS-A1ZE-06 10 3824211 3824211 C G KLF6 Missense_Mutation p.E100Q 0.49 tolerated(0.14) probably_damaging(0.968) TCGA-FS-A1ZE-06 10 5435405 5435405 C T TUBAL3 3'UTR 0.48 TCGA-FS-A1ZE-06 10 63170314 63170314 C T TMEM26 Silent p.A291A 0.35 TCGA-FS-A1ZE-06 10 64159311 64159311 A T ZNF365 Intron 0.49 TCGA-FS-A1ZE-06 10 73437212 73437212 G A CDH23 Splice_Site p.X97_splice 0.33 TCGA-FS-A1ZE-06 10 85991885 85991885 C T LRIT1 Missense_Mutation p.R557Q 0.55 tolerated(0.43) benign(0.012) TCGA-FS-A1ZE-06 10 88211815 88211815 G A WAPAL Missense_Mutation p.S1008L 0.44 tolerated(0.26) benign(0.02) TCGA-FS-A1ZE-06 10 96201752 96201752 G A TBC1D12 Silent p.Q357Q 0.39 TCGA-FS-A1ZE-06 10 96535148 96535148 A G CYP2C19 Silent p.G111G 0.53 TCGA-FS-A1ZE-06 11 117241991 117241991 C T CEP164 Missense_Mutation p.P321S 0.88 tolerated(0.25) benign(0.377) TCGA-FS-A1ZE-06 11 117789273 117789273 G A TMPRSS13 Missense_Mutation p.S101F 0.76 tolerated_low_confidence(0.07) probably_damaging(0.983) TCGA-FS-A1ZE-06 11 124412728 124412728 G A OR8B12 Silent p.L275L 0.97 TCGA-FS-A1ZE-06 11 30255226 30255226 C T FSHB Missense_Mutation p.S90F 0.50 tolerated(0.09) probably_damaging(0.996) TCGA-FS-A1ZE-06 11 32636297 32636297 C T CCDC73 Missense_Mutation p.E523K 0.39 deleterious(0.03) benign(0.133) TCGA-FS-A1ZE-06 11 36467960 36467960 G A PRR5L Silent p.S185S 0.46 TCGA-FS-A1ZE-06 11 40137376 40137376 C T LRRC4C Missense_Mutation p.R156Q 0.27 deleterious(0.04) probably_damaging(0.98) TCGA-FS-A1ZE-06 11 64522219 64522219 G A PYGM Silent p.S315S 0.37 TCGA-FS-A1ZE-06 11 65003966 65003966 G A SLC22A20 RNA 0.35 TCGA-FS-A1ZE-06 11 68822718 68822718 G A TPCN2 Silent p.A109A 0.35 TCGA-FS-A1ZE-06 12 103984724 103984724 G A STAB2 Missense_Mutation p.R44Q 0.45 tolerated(0.64) benign(0.001) TCGA-FS-A1ZE-06 12 109278890 109278890 G T DAO Silent p.A36A 0.47 TCGA-FS-A1ZE-06 12 109278891 109278891 G A DAO Missense_Mutation p.D37N 0.46 deleterious(0) possibly_damaging(0.825) TCGA-FS-A1ZE-06 12 119968748 119968748 G A CCDC60 Silent p.V477V 0.50 TCGA-FS-A1ZE-06 12 124081382 124081382 C T TMED2 3'UTR 0.31 TCGA-FS-A1ZE-06 12 124856917 124856917 G A NCOR2 Missense_Mutation p.P820S 0.41 unknown(0) TCGA-FS-A1ZE-06 12 14659974 14659974 A C PLBD1 Missense_Mutation p.L422R 0.51 tolerated(0.32) probably_damaging(0.936) TCGA-FS-A1ZE-06 12 25148886 25148886 A G C12orf77 Missense_Mutation p.C88R 0.41 tolerated_low_confidence(0.32) benign(0) TCGA-FS-A1ZE-06 12 34179315 34179315 C T ALG10 Missense_Mutation p.S296L 0.36 deleterious(0.02) benign(0.062) TCGA-FS-A1ZE-06 12 39688178 39688179 AC - KIF21A 3'Flank 0.28 TCGA-FS-A1ZE-06 12 4835834 4835834 G A GALNT8 Missense_Mutation p.M116I 0.44 tolerated(0.09) benign(0.001) TCGA-FS-A1ZE-06 12 50191101 50191101 G A NCKAP5L Missense_Mutation p.S181F 0.37 deleterious(0) possibly_damaging(0.882) TCGA-FS-A1ZE-06 12 54930811 54930811 G A NCKAP1L Missense_Mutation p.E1053K 0.39 tolerated(0.08) possibly_damaging(0.649) TCGA-FS-A1ZE-06 12 988854 988854 C T WNK1 Missense_Mutation p.P830L 0.44 deleterious(0) possibly_damaging(0.506) TCGA-FS-A1ZE-06 13 109379904 109379904 C T MYO16 Silent p.N138N 0.62 TCGA-FS-A1ZE-06 13 23915199 23915199 G A SACS Missense_Mutation p.S939F 0.62 benign(0.444) TCGA-FS-A1ZE-06 14 107219125 107219125 T C IGHV3-74 Missense_Mutation p.E2G 0.75 tolerated_low_confidence(0.12) benign(0.001) TCGA-FS-A1ZE-06 14 20483000 20483000 G A OR4K14 Missense_Mutation p.S118F 0.49 deleterious(0.02) benign(0.013) TCGA-FS-A1ZE-06 14 38723753 38723753 C T CLEC14A 3'UTR 0.48 TCGA-FS-A1ZE-06 14 75142897 75142897 G A AREL1 Missense_Mutation p.S260L 0.85 tolerated(0.11) benign(0.022) TCGA-FS-A1ZE-06 14 77702977 77702977 C T TMEM63C Silent p.L185L 0.79 TCGA-FS-A1ZE-06 14 95571499 95571499 G A DICER1 Missense_Mutation p.R1060C 0.06 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 15 22332767 22332767 C A RP11-69H14.6 RNA 0.42 TCGA-FS-A1ZE-06 15 71174870 71174870 C T THAP10 Missense_Mutation p.D233N 0.40 deleterious_low_confidence(0) benign(0.085) TCGA-FS-A1ZE-06 15 89402420 89402420 C T ACAN Silent p.L2202L 0.51 TCGA-FS-A1ZE-06 16 3023032 3023033 CT - PKMYT1 Frame_Shift_Del p.E474Afs*10 0.34 TCGA-FS-A1ZE-06 16 58079224 58079224 G A MMP15 Missense_Mutation p.M628I 0.34 tolerated(0.31) benign(0.001) TCGA-FS-A1ZE-06 16 71606176 71606176 C T TAT Missense_Mutation p.E207K 0.37 tolerated(0.06) benign(0.021) TCGA-FS-A1ZE-06 17 36093584 36093584 C T HNF1B Missense_Mutation p.E259K 0.46 deleterious(0.04) possibly_damaging(0.595) TCGA-FS-A1ZE-06 17 39659243 39659243 G A KRT13 Silent p.Y281Y 0.47 TCGA-FS-A1ZE-06 17 48695411 48695411 G A CACNA1G Silent p.V1743V 0.47 TCGA-FS-A1ZE-06 17 73780856 73780856 G A UNK 5'UTR 0.35 TCGA-FS-A1ZE-06 18 19284659 19284659 G C ABHD3 5'UTR 0.58 TCGA-FS-A1ZE-06 18 31538307 31538307 G - NOL4 Frame_Shift_Del p.L378* 0.30 TCGA-FS-A1ZE-06 18 44549197 44549197 C T TCEB3CL Missense_Mutation p.E368K 0.03 tolerated(0.09) possibly_damaging(0.874) TCGA-FS-A1ZE-06 18 55020187 55020187 A G ST8SIA3 Missense_Mutation p.N37S 0.41 benign(0) TCGA-FS-A1ZE-06 18 61471964 61471964 C T SERPINB7 3'UTR 0.33 TCGA-FS-A1ZE-06 19 14674675 14674675 T A TECR Missense_Mutation p.L76Q 0.54 deleterious(0) possibly_damaging(0.602) TCGA-FS-A1ZE-06 19 15739173 15739173 C T CYP4F8 RNA 0.46 TCGA-FS-A1ZE-06 19 16861034 16861034 C T NWD1 Silent p.L527L 0.49 TCGA-FS-A1ZE-06 19 21299966 21299966 C T ZNF714 Missense_Mutation p.H166Y 0.33 tolerated(0.2) probably_damaging(0.959) TCGA-FS-A1ZE-06 19 21991634 21991634 T C ZNF43 Missense_Mutation p.E402G 0.53 deleterious(0.01) possibly_damaging(0.685) TCGA-FS-A1ZE-06 19 21991924 21991924 C A ZNF43 Missense_Mutation p.K305N 0.58 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1ZE-06 19 3736281 3736281 G A TJP3 Missense_Mutation p.D425N 0.50 tolerated(0.07) possibly_damaging(0.847) TCGA-FS-A1ZE-06 19 39960881 39960881 C T SUPT5H Silent p.F499F 0.46 TCGA-FS-A1ZE-06 19 47823556 47823556 C T C5AR1 Silent p.Y174Y 0.42 TCGA-FS-A1ZE-06 19 47823557 47823557 C T C5AR1 Missense_Mutation p.R175W 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 19 52272840 52272840 G C FPR2 Missense_Mutation p.R310P 0.47 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZE-06 19 53085502 53085502 G A ZNF701 Missense_Mutation p.G130S 0.45 tolerated(0.89) possibly_damaging(0.634) TCGA-FS-A1ZE-06 19 55401098 55401098 C T FCAR Silent p.L245L 0.47 TCGA-FS-A1ZE-06 19 56156050 56156050 C T ZNF581 Missense_Mutation p.S38F 0.36 deleterious(0) benign(0.384) TCGA-FS-A1ZE-06 19 56156051 56156051 C T ZNF581 Silent p.S38S 0.36 TCGA-FS-A1ZE-06 19 56918417 56918417 C T ZNF583 5'UTR 0.50 TCGA-FS-A1ZE-06 19 9225585 9225585 C T OR7G1 Missense_Mutation p.M285I 0.53 tolerated(0.07) benign(0.118) TCGA-FS-A1ZE-06 1 10479478 10479478 C T PGD Missense_Mutation p.S405F 0.40 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZE-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.45 deleterious(0.01) benign(0.045) TCGA-FS-A1ZE-06 1 116675835 116675835 G A MAB21L3 Missense_Mutation p.R313K 0.49 tolerated(0.24) benign(0.052) TCGA-FS-A1ZE-06 1 1221515 1221515 C T SCNN1D Silent p.S256S 0.43 TCGA-FS-A1ZE-06 1 12856180 12856180 G A PRAMEF1 3'UTR 0.43 TCGA-FS-A1ZE-06 1 144994845 144994845 C T PDE4DIP 5'UTR 0.22 TCGA-FS-A1ZE-06 1 172546697 172546697 A G SUCO Missense_Mutation p.K428E 0.35 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZE-06 1 202317953 202317953 T C PPP1R12B 5'UTR 0.43 TCGA-FS-A1ZE-06 1 203015491 203015491 G A PPFIA4 5'Flank 0.36 TCGA-FS-A1ZE-06 1 233518505 233518505 G A MLK4 3'UTR 0.47 TCGA-FS-A1ZE-06 1 248458416 248458416 G A OR2T12 Silent p.L155L 0.48 TCGA-FS-A1ZE-06 1 35223788 35223788 G A GJB5 3'UTR 0.53 TCGA-FS-A1ZE-06 1 97981303 97981303 G A DPYD Silent p.T573T 0.47 TCGA-FS-A1ZE-06 20 24523737 24523737 G A SYNDIG1 Missense_Mutation p.D2N 0.61 deleterious_low_confidence(0.04) benign(0.068) TCGA-FS-A1ZE-06 20 31973529 31973529 G A CDK5RAP1 Missense_Mutation p.P268L 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 20 3215509 3215509 G A SLC4A11 Silent p.F83F 0.23 TCGA-FS-A1ZE-06 20 33894523 33894523 C G UQCC1 Silent p.R237R 0.78 TCGA-FS-A1ZE-06 20 34571961 34571961 C T CNBD2 Silent p.F155F 0.79 TCGA-FS-A1ZE-06 20 35387003 35387003 G A DSN1 Missense_Mutation p.S203F 0.23 deleterious(0.04) possibly_damaging(0.878) TCGA-FS-A1ZE-06 20 37146558 37146558 G A RALGAPB Silent p.L444L 0.64 TCGA-FS-A1ZE-06 20 44505869 44505869 C T ZSWIM3 Silent p.H224H 0.20 TCGA-FS-A1ZE-06 20 44685019 44685019 G A SLC12A5 Missense_Mutation p.D999N 0.16 deleterious(0.03) benign(0.117) TCGA-FS-A1ZE-06 20 5100229 5100229 G A PCNA Silent p.L72L 0.19 TCGA-FS-A1ZE-06 20 5953775 5953775 C T MCM8 Missense_Mutation p.P443L 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 21 39580587 39580587 G A DSCR10 RNA 0.87 TCGA-FS-A1ZE-06 21 46078116 46078116 G A KRTAP12-3 Missense_Mutation p.G74R 0.88 tolerated(0.15) probably_damaging(0.999) TCGA-FS-A1ZE-06 22 28194068 28194068 G A MN1 Nonsense_Mutation p.Q822* 0.81 TCGA-FS-A1ZE-06 22 41223178 41223178 T G ST13 Silent p.G301G 0.95 TCGA-FS-A1ZE-06 2 122522899 122522899 C T TSN Missense_Mutation p.R215W 0.42 deleterious(0.04) probably_damaging(0.988) TCGA-FS-A1ZE-06 2 125282027 125282027 G T CNTNAP5 Missense_Mutation p.G491V 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 2 170592455 170592455 G A KLHL23 Missense_Mutation p.E311K 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZE-06 2 179505295 179505295 C T TTN Missense_Mutation p.E13566K 0.36 TCGA-FS-A1ZE-06 2 187712480 187712480 G A ZSWIM2 Missense_Mutation p.P70S 0.55 deleterious(0.03) benign(0.024) TCGA-FS-A1ZE-06 2 217070067 217070067 A G XRCC5 3'UTR 0.58 TCGA-FS-A1ZE-06 2 228754594 228754594 G A DAW1 Missense_Mutation p.E46K 0.45 tolerated(0.35) benign(0.002) TCGA-FS-A1ZE-06 2 231177389 231177389 G A SP140 Missense_Mutation p.G865E 0.36 tolerated(1) benign(0.027) TCGA-FS-A1ZE-06 2 29240119 29240119 C A FAM179A Missense_Mutation p.Q382K 0.32 tolerated(0.29) benign(0.001) TCGA-FS-A1ZE-06 2 32093518 32093518 G A MEMO1 Missense_Mutation p.S269L 0.31 deleterious(0.01) benign(0.146) TCGA-FS-A1ZE-06 2 32724814 32724814 G A BIRC6 Missense_Mutation p.R2890Q 0.40 probably_damaging(0.984) TCGA-FS-A1ZE-06 2 58373490 58373490 G A VRK2 Missense_Mutation p.A355T 0.38 tolerated(0.68) benign(0.017) TCGA-FS-A1ZE-06 2 71215643 71215643 C T TEX261 3'UTR 0.28 TCGA-FS-A1ZE-06 2 85770052 85770052 C T MAT2A Missense_Mutation p.P327L 0.35 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZE-06 2 95944471 95944471 G A PROM2 Silent p.E351E 0.47 TCGA-FS-A1ZE-06 2 97508103 97508105 TTC - ANKRD23 In_Frame_Del p.K58del 0.29 TCGA-FS-A1ZE-06 3 108072555 108072555 G A HHLA2 Missense_Mutation p.E116K 0.37 deleterious(0.03) benign(0.227) TCGA-FS-A1ZE-06 3 126219548 126219548 C T UROC1 Missense_Mutation p.V439I 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZE-06 3 168819935 168819935 G A MECOM Missense_Mutation p.S772L 0.52 deleterious(0.01) benign(0.341) TCGA-FS-A1ZE-06 3 182925450 182925450 C T MCF2L2 Missense_Mutation p.M886I 0.38 tolerated(0.12) benign(0.002) TCGA-FS-A1ZE-06 3 185783821 185783821 G A ETV5 Missense_Mutation p.P231S 0.45 tolerated(0.52) possibly_damaging(0.77) TCGA-FS-A1ZE-06 3 189455576 189455576 G A TP63 Missense_Mutation p.R37Q 0.45 tolerated_low_confidence(0.33) benign(0.078) TCGA-FS-A1ZE-06 3 31743863 31743863 C T OSBPL10 Missense_Mutation p.M411I 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZE-06 3 45801384 45801384 C T SLC6A20 Missense_Mutation p.G532R 0.48 tolerated(0.28) probably_damaging(0.986) TCGA-FS-A1ZE-06 3 48609941 48609941 C T COL7A1 Missense_Mutation p.E2311K 0.51 probably_damaging(0.999) TCGA-FS-A1ZE-06 3 49785492 49785492 C T IP6K1 5'UTR 0.45 TCGA-FS-A1ZE-06 3 49933263 49933263 C A MST1R Silent p.G949G 0.38 TCGA-FS-A1ZE-06 3 51971239 51971239 G A RRP9 Silent p.F162F 0.48 TCGA-FS-A1ZE-06 3 77147226 77147226 C T ROBO2 Silent p.I57I 0.39 TCGA-FS-A1ZE-06 3 86010782 86010782 G A CADM2 Missense_Mutation p.V312I 0.38 tolerated(0.55) benign(0.034) TCGA-FS-A1ZE-06 3 9754249 9754249 G A CPNE9 Silent p.G134G 0.36 TCGA-FS-A1ZE-06 3 97983771 97983771 G A OR5H6 Missense_Mutation p.V215I 0.60 tolerated(0.8) benign(0.02) TCGA-FS-A1ZE-06 4 100237120 100237120 C T ADH1B Missense_Mutation p.E168K 0.34 deleterious(0.01) benign(0.224) TCGA-FS-A1ZE-06 4 10100722 10100722 C T WDR1 Missense_Mutation p.E91K 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZE-06 4 122749834 122749834 G A BBS7 Silent p.L576L 0.38 TCGA-FS-A1ZE-06 4 158059978 158059978 G A GLRB Missense_Mutation p.D210N 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZE-06 4 164506934 164506934 G A MARCH1 Silent p.F130F 0.35 TCGA-FS-A1ZE-06 4 175709987 175709987 C T GLRA3 Missense_Mutation p.R60K 0.42 deleterious(0.02) possibly_damaging(0.718) TCGA-FS-A1ZE-06 4 186435436 186435436 G A PDLIM3 Missense_Mutation p.P129L 0.92 deleterious(0.03) possibly_damaging(0.563) TCGA-FS-A1ZE-06 4 41747973 41747973 C A PHOX2B Missense_Mutation p.A266S 0.35 tolerated_low_confidence(0.28) unknown(0) TCGA-FS-A1ZE-06 4 41747992 41747992 T G PHOX2B Silent p.A259A 0.50 TCGA-FS-A1ZE-06 4 6083437 6083437 C T JAKMIP1 Missense_Mutation p.E334K 0.47 tolerated(0.06) possibly_damaging(0.775) TCGA-FS-A1ZE-06 4 62761482 62761482 G A LPHN3 Missense_Mutation p.G538E 0.38 deleterious(0.02) probably_damaging(0.93) TCGA-FS-A1ZE-06 4 7056555 7056555 C T TADA2B Missense_Mutation p.P346L 0.45 tolerated(0.08) benign(0.008) TCGA-FS-A1ZE-06 4 74608184 74608184 A G IL8 3'UTR 0.27 TCGA-FS-A1ZE-06 5 10236718 10236718 C T FAM173B Missense_Mutation p.A106T 0.58 tolerated(0.09) probably_damaging(0.996) TCGA-FS-A1ZE-06 5 10430029 10430029 T A MARCH6 Nonsense_Mutation p.L844* 0.64 TCGA-FS-A1ZE-06 5 13735336 13735336 C T DNAH5 Missense_Mutation p.E3889K 0.24 benign(0.305) TCGA-FS-A1ZE-06 5 169028327 169028327 C T SPDL1 Silent p.L456L 0.90 TCGA-FS-A1ZE-06 5 61763066 61763069 GAAC - IPO11 Frame_Shift_Del p.R250Hfs*5 0.20 TCGA-FS-A1ZE-06 5 67576528 67576528 C T PIK3R1 Silent p.S269S 0.65 TCGA-FS-A1ZE-06 5 78359493 78359493 C T DMGDH Missense_Mutation p.M73I 0.34 tolerated(0.53) benign(0.019) TCGA-FS-A1ZE-06 5 79029992 79029992 G A CMYA5 Missense_Mutation p.V1802I 0.34 benign(0.067) TCGA-FS-A1ZE-06 6 142396988 142396988 G A NMBR Missense_Mutation p.L324F 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 6 155458566 155458566 G A TIAM2 Missense_Mutation p.E484K 0.50 deleterious(0.02) possibly_damaging(0.626) TCGA-FS-A1ZE-06 6 167709750 167709750 G A UNC93A Splice_Site p.X167_splice 0.38 TCGA-FS-A1ZE-06 6 32975833 32975833 C T HLA-DOA Silent p.L96L 0.32 TCGA-FS-A1ZE-06 6 49666200 49666200 G A CRISP2 Missense_Mutation p.L98F 0.41 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZE-06 6 55216059 55216059 G A GFRAL Missense_Mutation p.G127R 0.44 tolerated(0.17) benign(0.016) TCGA-FS-A1ZE-06 6 55684502 55684502 C T BMP5 Missense_Mutation p.E212K 0.50 tolerated(0.33) benign(0.038) TCGA-FS-A1ZE-06 6 74072991 74072991 G A KHDC3L Missense_Mutation p.A115T 0.45 tolerated(0.07) possibly_damaging(0.894) TCGA-FS-A1ZE-06 7 100071977 100071977 G A TSC22D4 Silent p.F283F 0.47 TCGA-FS-A1ZE-06 7 100281709 100281709 G A GIGYF1 Missense_Mutation p.P601L 0.53 tolerated(0.49) unknown(0) TCGA-FS-A1ZE-06 7 106685403 106685403 G A PRKAR2B Silent p.T17T 0.25 TCGA-FS-A1ZE-06 7 130353588 130353588 G A TSGA13 3'UTR 0.33 TCGA-FS-A1ZE-06 7 130353589 130353589 G A TSGA13 3'UTR 0.30 TCGA-FS-A1ZE-06 7 142364267 142364267 T C TRBV24-1 Missense_Mutation p.Y12H 0.43 deleterious(0.04) benign(0.022) TCGA-FS-A1ZE-06 7 147926820 147926820 A G CNTNAP2 Silent p.G1110G 0.37 TCGA-FS-A1ZE-06 7 151849907 151849907 C T KMT2C Missense_Mutation p.E4137K 0.45 probably_damaging(0.995) TCGA-FS-A1ZE-06 7 151849908 151849908 C T KMT2C Silent p.L4136L 0.45 TCGA-FS-A1ZE-06 7 21658816 21658816 G A DNAH11 Silent p.A1456A 0.38 TCGA-FS-A1ZE-06 7 25266388 25266388 C T NPVF Silent p.G132G 0.68 TCGA-FS-A1ZE-06 7 2686504 2686504 G A TTYH3 Silent p.G47G 0.92 TCGA-FS-A1ZE-06 7 55466279 55466279 T C LANCL2 Silent p.Y162Y 0.24 TCGA-FS-A1ZE-06 7 76903049 76903049 G A CCDC146 Silent p.E404E 0.46 TCGA-FS-A1ZE-06 7 82582166 82582166 C T PCLO Silent p.E2701E 0.34 TCGA-FS-A1ZE-06 7 87144571 87144571 G A ABCB1 Silent p.F1086F 0.43 TCGA-FS-A1ZE-06 8 110431459 110431459 G A PKHD1L1 Missense_Mutation p.G832R 0.29 deleterious(0) possibly_damaging(0.527) TCGA-FS-A1ZE-06 8 113275867 113275867 C T CSMD3 Splice_Site p.X3288_splice 0.43 TCGA-FS-A1ZE-06 8 132998461 132998461 G A EFR3A Missense_Mutation p.M630I 0.26 tolerated(0.08) benign(0.006) TCGA-FS-A1ZE-06 8 27462570 27462570 G A CLU Missense_Mutation p.P234S 0.40 tolerated(0.43) benign(0.033) TCGA-FS-A1ZE-06 8 3008933 3008933 A G CSMD1 Missense_Mutation p.L2006S 0.42 possibly_damaging(0.581) TCGA-FS-A1ZE-06 9 104375733 104375733 A G GRIN3A Silent p.H897H 0.43 TCGA-FS-A1ZE-06 9 116823799 116823799 G A AMBP Missense_Mutation p.S253F 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZE-06 9 117085950 117085950 G A ORM1 Missense_Mutation p.G41D 0.40 tolerated(0.1) probably_damaging(1) TCGA-FS-A1ZE-06 9 126132627 126132627 G A CRB2 Missense_Mutation p.G432E 0.42 deleterious(0.01) probably_damaging(0.931) TCGA-FS-A1ZE-06 9 131256911 131256911 C T ODF2 Silent p.I625I 0.44 TCGA-FS-A1ZE-06 9 84609948 84609948 G A SPATA31D1 Silent p.R1521R 0.36 TCGA-FS-A1ZE-06 9 990879 990879 A G DMRT3 Silent p.E431E 0.48 TCGA-FS-A1ZE-06 X 70467680 70467680 C A ZMYM3 Missense_Mutation p.Q684H 1.00 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A1ZE-06 X 78010805 78010805 C T LPAR4 Missense_Mutation p.R147C 0.92 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZF-06 10 124358342 124358342 G A DMBT1 Silent p.Q1003Q 0.74 TCGA-FS-A1ZF-06 10 135184099 135184099 G A ECHS1 Missense_Mutation p.A84V 0.82 tolerated(0.05) possibly_damaging(0.503) TCGA-FS-A1ZF-06 10 38654496 38654496 C T HSD17B7P2 RNA 0.65 TCGA-FS-A1ZF-06 10 46963872 46963872 C T SYT15 Missense_Mutation p.S364N 0.33 deleterious(0.02) possibly_damaging(0.461) TCGA-FS-A1ZF-06 10 90034768 90034768 G A RNLS Silent p.L300L 0.78 TCGA-FS-A1ZF-06 11 104825688 104825688 G A CASP4 Silent p.S16S 0.82 TCGA-FS-A1ZF-06 11 1159302 1159302 G A MUC5AC Missense_Mutation p.E427K 0.82 deleterious(0.04) benign(0.109) TCGA-FS-A1ZF-06 11 123508986 123508986 G A SCN3B Silent p.I164I 0.79 TCGA-FS-A1ZF-06 11 1262615 1262615 C T MUC5B Missense_Mutation p.T1502I 0.77 unknown(0) TCGA-FS-A1ZF-06 11 18253021 18253021 T C SAA4 3'UTR 0.73 TCGA-FS-A1ZF-06 11 55062994 55062994 C T TRIM51HP RNA 0.33 TCGA-FS-A1ZF-06 11 62933651 62933651 G A SLC22A25 Missense_Mutation p.L384F 0.25 deleterious(0.03) possibly_damaging(0.706) TCGA-FS-A1ZF-06 11 65124566 65124566 C T TIGD3 Silent p.P429P 0.30 TCGA-FS-A1ZF-06 11 65309152 65309152 C T LTBP3 Missense_Mutation p.A882T 0.42 tolerated(0.45) benign(0.005) TCGA-FS-A1ZF-06 11 65309153 65309153 C T LTBP3 Silent p.G881G 0.44 TCGA-FS-A1ZF-06 11 71907114 71907114 G A FOLR1 Missense_Mutation p.E223K 0.51 tolerated(0.52) probably_damaging(0.917) TCGA-FS-A1ZF-06 11 76255449 76255449 G A C11orf30 Silent p.Q952Q 0.34 TCGA-FS-A1ZF-06 11 92534248 92534248 C T FAT3 Missense_Mutation p.S2690F 0.75 probably_damaging(0.926) TCGA-FS-A1ZF-06 12 115114221 115114221 C T TBX3 Silent p.E332E 0.50 TCGA-FS-A1ZF-06 12 116429501 116429501 G A MED13L Silent p.P1086P 0.42 TCGA-FS-A1ZF-06 12 116429502 116429502 G A MED13L Missense_Mutation p.P1086L 0.43 deleterious(0.01) unknown(0) TCGA-FS-A1ZF-06 12 121878938 121878938 G A KDM2B Missense_Mutation p.S1128F 0.40 deleterious(0) possibly_damaging(0.553) TCGA-FS-A1ZF-06 12 15067662 15067662 G A ERP27 3'UTR 0.48 TCGA-FS-A1ZF-06 12 15087892 15087892 G T ERP27 Missense_Mutation p.S77R 0.29 tolerated(0.23) possibly_damaging(0.811) TCGA-FS-A1ZF-06 12 18841104 18841104 C T PLCZ1 Missense_Mutation p.G504S 0.43 tolerated(0.74) benign(0.006) TCGA-FS-A1ZF-06 12 18891976 18891976 G A CAPZA3 Silent p.R258R 0.43 TCGA-FS-A1ZF-06 12 351819 351819 C T SLC6A13 Missense_Mutation p.D147N 0.33 tolerated(0.1) benign(0.027) TCGA-FS-A1ZF-06 12 41327666 41327666 G A CNTN1 Missense_Mutation p.R324K 0.49 tolerated(0.16) benign(0.009) TCGA-FS-A1ZF-06 12 52938151 52938151 G A KRT71 3'UTR 0.46 TCGA-FS-A1ZF-06 12 53207673 53207673 C T KRT4 Missense_Mutation p.G57E 0.43 deleterious(0) possibly_damaging(0.744) TCGA-FS-A1ZF-06 12 53207674 53207674 C T KRT4 Missense_Mutation p.G57R 0.42 deleterious(0.03) benign(0.086) TCGA-FS-A1ZF-06 12 56077633 56077633 C T METTL7B Missense_Mutation p.P179S 0.38 tolerated(0.12) benign(0.067) TCGA-FS-A1ZF-06 12 57345735 57345735 A G RDH16 3'UTR 0.27 TCGA-FS-A1ZF-06 12 62960164 62960164 T A MON2 Missense_Mutation p.D1419E 0.39 tolerated(0.49) benign(0.037) TCGA-FS-A1ZF-06 12 6961343 6961343 C T USP5 5'UTR 0.37 TCGA-FS-A1ZF-06 12 7080097 7080097 C T EMG1 Missense_Mutation p.P4L 0.40 deleterious_low_confidence(0.01) TCGA-FS-A1ZF-06 12 7080098 7080098 C T EMG1 Silent p.P4P 0.40 TCGA-FS-A1ZF-06 12 7653916 7653916 C T CD163 Silent p.L92L 0.46 TCGA-FS-A1ZF-06 12 83424584 83424584 A T TMTC2 Missense_Mutation p.K693M 0.45 tolerated(0.2) possibly_damaging(0.738) TCGA-FS-A1ZF-06 13 29600485 29600485 A G MTUS2 Silent p.T560T 0.37 TCGA-FS-A1ZF-06 13 61987277 61987277 G A PCDH20 Missense_Mutation p.L319F 0.35 deleterious(0.02) benign(0.078) TCGA-FS-A1ZF-06 13 75873643 75873646 GTTA ATT TBC1D4 Frame_Shift_Del p.F992Lfs*4 0.34 TCGA-FS-A1ZF-06 14 100992260 100992260 C T WDR25 Silent p.L385L 0.34 TCGA-FS-A1ZF-06 14 100992261 100992261 C T WDR25 Missense_Mutation p.R386W 0.32 deleterious(0.04) possibly_damaging(0.517) TCGA-FS-A1ZF-06 14 101498401 101498401 C T MIR543 RNA 0.37 TCGA-FS-A1ZF-06 14 102509020 102509020 C T DYNC1H1 Missense_Mutation p.P4150S 0.33 probably_damaging(0.989) TCGA-FS-A1ZF-06 14 20404494 20404494 C T OR4K1 Silent p.I223I 0.44 TCGA-FS-A1ZF-06 14 39647049 39647049 C T PNN Missense_Mutation p.R143W 0.36 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZF-06 14 70633399 70633399 C T SLC8A3 Missense_Mutation p.E581K 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A1ZF-06 14 75283735 75283735 C T YLPM1 Silent p.I1929I 0.52 TCGA-FS-A1ZF-06 14 91779804 91779804 C T CCDC88C Missense_Mutation p.E786K 0.38 deleterious(0) benign(0.41) TCGA-FS-A1ZF-06 14 91779805 91779805 C T CCDC88C Silent p.L785L 0.40 TCGA-FS-A1ZF-06 14 96136862 96136862 C T TCL6 RNA 0.50 TCGA-FS-A1ZF-06 15 23931501 23931501 C T NDN Silent p.Q288Q 0.44 TCGA-FS-A1ZF-06 15 29347005 29347005 C T APBA2 Silent p.T306T 0.18 TCGA-FS-A1ZF-06 15 35529613 35529613 G A ANP32AP1 RNA 0.43 TCGA-FS-A1ZF-06 15 42111090 42111090 C T MAPKBP1 Silent p.R748R 0.58 TCGA-FS-A1ZF-06 15 51291285 51291285 G A AP4E1 Missense_Mutation p.G974E 0.38 tolerated(0.24) benign(0.012) TCGA-FS-A1ZF-06 15 62993406 62993406 C T TLN2 Silent p.L563L 0.41 TCGA-FS-A1ZF-06 15 67681242 67681242 C T IQCH Silent p.I510I 0.39 TCGA-FS-A1ZF-06 15 75798294 75798294 A T PTPN9 Nonsense_Mutation p.C230* 0.37 TCGA-FS-A1ZF-06 15 85467334 85467334 C T SLC28A1 Missense_Mutation p.S359F 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZF-06 15 85467335 85467335 C T SLC28A1 Silent p.S359S 0.31 TCGA-FS-A1ZF-06 15 90168190 90168190 C T TICRR Missense_Mutation p.S1550F 0.35 tolerated(0.08) possibly_damaging(0.502) TCGA-FS-A1ZF-06 15 91433699 91433699 C T FES Silent p.F435F 0.41 TCGA-FS-A1ZF-06 15 97327454 97327454 G A SPATA8 Missense_Mutation p.G54E 0.32 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FS-A1ZF-06 16 15719493 15719493 G A KIAA0430 Silent p.R563R 0.50 TCGA-FS-A1ZF-06 16 21210907 21210907 G A ZP2 Silent p.S637S 0.39 TCGA-FS-A1ZF-06 16 3304352 3304352 C T MEFV Missense_Mutation p.R239Q 0.48 tolerated(0.06) possibly_damaging(0.512) TCGA-FS-A1ZF-06 16 48209175 48209175 G A ABCC11 Missense_Mutation p.T1231I 0.79 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZF-06 16 4934734 4934734 C T PPL Missense_Mutation p.V1308M 0.40 tolerated(0.06) probably_damaging(0.99) TCGA-FS-A1ZF-06 16 4934735 4934735 C T PPL Silent p.E1307E 0.39 TCGA-FS-A1ZF-06 16 57503961 57503961 G T POLR2C Missense_Mutation p.W176C 0.62 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 16 72831236 72831236 A T ZFHX3 Missense_Mutation p.M1782K 0.73 possibly_damaging(0.692) TCGA-FS-A1ZF-06 16 84778424 84778424 A T USP10 Missense_Mutation p.I113F 0.80 deleterious_low_confidence(0.02) benign(0.14) TCGA-FS-A1ZF-06 16 9857959 9857959 G A GRIN2A Missense_Mutation p.P1148S 0.38 tolerated(0.16) benign(0.069) TCGA-FS-A1ZF-06 17 10369624 10369624 T C MYH4 Missense_Mutation p.N105S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZF-06 17 11687826 11687826 C T DNAH9 Silent p.F2677F 0.46 TCGA-FS-A1ZF-06 17 16089914 16089914 G A NCOR1 Nonsense_Mutation p.R66* 0.44 TCGA-FS-A1ZF-06 17 18396162 18396162 C G LGALS9C Missense_Mutation p.Q305E 0.10 deleterious(0.03) possibly_damaging(0.51) TCGA-FS-A1ZF-06 17 42225822 42225822 C T C17orf53 Silent p.I217I 0.75 TCGA-FS-A1ZF-06 17 53045916 53045916 C T COX11 Missense_Mutation p.R31K 0.29 tolerated_low_confidence(0.4) benign(0.002) TCGA-FS-A1ZF-06 17 62131713 62131713 C A ERN1 Missense_Mutation p.R617L 0.52 deleterious(0) benign(0.102) TCGA-FS-A1ZF-06 17 6337259 6337259 C T AIPL1 Missense_Mutation p.E86K 0.35 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZF-06 17 65972002 65972002 C T BPTF Missense_Mutation p.S2885F 0.54 probably_damaging(0.995) TCGA-FS-A1ZF-06 17 67047176 67047176 A T ABCA9 Nonsense_Mutation p.L31* 0.43 TCGA-FS-A1ZF-06 17 7504810 7504810 G A FXR2 Silent p.L193L 0.42 TCGA-FS-A1ZF-06 17 7592120 7592120 C T WRAP53 Missense_Mutation p.R52W 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-FS-A1ZF-06 17 76525716 76525716 C T DNAH17 Silent p.K1115K 0.29 TCGA-FS-A1ZF-06 18 14851592 14851592 G A ANKRD30B Missense_Mutation p.V1098I 0.41 tolerated(1) benign(0.002) TCGA-FS-A1ZF-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.58 TCGA-FS-A1ZF-06 18 31320017 31320017 A C ASXL3 Missense_Mutation p.L883F 0.38 benign(0.157) TCGA-FS-A1ZF-06 18 31326667 31326667 C T ASXL3 3'UTR 0.63 TCGA-FS-A1ZF-06 18 44013470 44013470 T G RNF165 Splice_Site p.X126_splice 0.44 TCGA-FS-A1ZF-06 18 51025846 51025846 G A DCC Silent p.P1359P 0.37 TCGA-FS-A1ZF-06 18 56184333 56184333 C T ALPK2 Missense_Mutation p.G1916D 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZF-06 18 61310740 61310740 C T SERPINB4 Silent p.E24E 0.32 TCGA-FS-A1ZF-06 19 11942603 11942603 T A ZNF440 Missense_Mutation p.F204L 0.40 tolerated(0.73) possibly_damaging(0.904) TCGA-FS-A1ZF-06 19 13409919 13409919 G A CACNA1A Missense_Mutation p.P843L 0.40 possibly_damaging(0.683) TCGA-FS-A1ZF-06 19 15905601 15905601 T G OR10H5 Missense_Mutation p.V248G 0.27 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZF-06 19 16186893 16186893 A C TPM4 Missense_Mutation p.K51Q 0.47 tolerated(0.31) benign(0.018) TCGA-FS-A1ZF-06 19 16631005 16631005 G T CHERP Missense_Mutation p.S806Y 0.43 deleterious(0) unknown(0) TCGA-FS-A1ZF-06 19 19638826 19638826 C T NDUFA13 Missense_Mutation p.S109F 0.50 deleterious(0) probably_damaging(0.934) TCGA-FS-A1ZF-06 19 2399055 2399055 C T TMPRSS9 Silent p.H92H 0.35 TCGA-FS-A1ZF-06 19 41930525 41930525 C T BCKDHA 3'UTR 0.47 TCGA-FS-A1ZF-06 19 43348602 43348602 A T PSG10P RNA 0.43 TCGA-FS-A1ZF-06 19 46998733 46998733 C T PNMAL2 5'UTR 0.40 TCGA-FS-A1ZF-06 19 46998734 46998734 C T PNMAL2 5'UTR 0.40 TCGA-FS-A1ZF-06 19 49398348 49398348 C T TULP2 Missense_Mutation p.E141K 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZF-06 19 50462665 50462665 C T SIGLEC11 Missense_Mutation p.E337K 0.49 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZF-06 19 50474570 50474570 C T SIGLEC16 RNA 0.48 TCGA-FS-A1ZF-06 19 50881049 50881049 C T NR1H2 Missense_Mutation p.P35S 0.42 tolerated(0.29) unknown(0) TCGA-FS-A1ZF-06 19 50947068 50947068 G A MYBPC2 Silent p.V376V 0.45 TCGA-FS-A1ZF-06 19 51528042 51528042 C T KLK11 Missense_Mutation p.G49R 0.41 tolerated(0.31) benign(0.004) TCGA-FS-A1ZF-06 19 54406370 54406370 C T PRKCG Missense_Mutation p.S540F 0.38 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZF-06 19 56320962 56320962 G A NLRP11 Silent p.V338V 0.52 TCGA-FS-A1ZF-06 19 58564834 58564834 G A ZSCAN1 Nonsense_Mutation p.W214* 0.38 TCGA-FS-A1ZF-06 19 9063923 9063923 C T MUC16 Silent p.G7841G 0.48 TCGA-FS-A1ZF-06 19 9069895 9069895 G A MUC16 Missense_Mutation p.P5851S 0.40 unknown(0) TCGA-FS-A1ZF-06 1 115537573 115537573 G A SYCP1 Missense_Mutation p.R955H 0.41 tolerated(0.12) benign(0.026) TCGA-FS-A1ZF-06 1 120351479 120351479 C T REG4 5'UTR 0.46 TCGA-FS-A1ZF-06 1 152275131 152275131 G C FLG 3'UTR 0.39 TCGA-FS-A1ZF-06 1 152279860 152279860 G A FLG Missense_Mutation p.S2501F 0.60 probably_damaging(0.992) TCGA-FS-A1ZF-06 1 152323828 152323828 C T FLG2 Missense_Mutation p.G2145E 0.58 benign(0.166) TCGA-FS-A1ZF-06 1 152324077 152324077 C T FLG2 Missense_Mutation p.G2062E 0.60 probably_damaging(0.972) TCGA-FS-A1ZF-06 1 155150687 155150687 A T TRIM46 Silent p.T373T 0.25 TCGA-FS-A1ZF-06 1 156627951 156627951 C A BCAN Missense_Mutation p.D775E 0.33 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZF-06 1 156814367 156814367 C T INSRR Missense_Mutation p.G875E 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 1 156880530 156880530 C T PEAR1 Missense_Mutation p.S649F 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 1 157067746 157067746 A G ETV3L Missense_Mutation p.M174T 0.28 tolerated(0.42) benign(0) TCGA-FS-A1ZF-06 1 157556142 157556142 C T FCRL4 Silent p.G317G 0.55 TCGA-FS-A1ZF-06 1 165370608 165370608 G A RXRG Silent p.S428S 0.23 TCGA-FS-A1ZF-06 1 165370609 165370609 G A RXRG Missense_Mutation p.S428F 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 1 169434943 169434943 G A SLC19A2 3'UTR 0.64 TCGA-FS-A1ZF-06 1 182026983 182026983 G A ZNF648 Missense_Mutation p.P55S 0.25 tolerated_low_confidence(0.18) benign(0.001) TCGA-FS-A1ZF-06 1 185958751 185958751 C T HMCN1 Silent p.A1060A 0.68 TCGA-FS-A1ZF-06 1 19477268 19477268 T C UBR4 Silent p.P2411P 0.39 TCGA-FS-A1ZF-06 1 196459048 196459048 G A KCNT2 Silent p.F65F 0.60 TCGA-FS-A1ZF-06 1 196928190 196928190 C T CFHR2 Missense_Mutation p.P265S 0.56 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZF-06 1 198703491 198703491 G A PTPRC Silent p.R738R 0.59 TCGA-FS-A1ZF-06 1 200801331 200801331 C T CAMSAP2 Missense_Mutation p.R217C 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 1 201330443 201330443 G A TNNT2 Silent p.F248F 0.35 TCGA-FS-A1ZF-06 1 205696889 205696889 G A NUCKS1 Nonsense_Mutation p.R38* 0.56 TCGA-FS-A1ZF-06 1 205886433 205886433 C T SLC26A9 Missense_Mutation p.R769H 0.24 tolerated_low_confidence(0.13) benign(0.01) TCGA-FS-A1ZF-06 1 206331020 206331020 G A CTSE Splice_Site p.X343_splice 0.24 TCGA-FS-A1ZF-06 1 214819327 214819327 C T CENPF Silent p.I2138I 0.24 TCGA-FS-A1ZF-06 1 228005003 228005003 G A PRSS38 Silent p.V135V 0.34 TCGA-FS-A1ZF-06 1 248039822 248039822 A G TRIM58 3'UTR 0.20 TCGA-FS-A1ZF-06 1 248224344 248224344 C T OR2L3 Missense_Mutation p.R121C 0.33 deleterious(0.01) benign(0.052) TCGA-FS-A1ZF-06 1 36028075 36028075 C T NCDN Missense_Mutation p.S409F 0.59 deleterious(0.05) probably_damaging(0.94) TCGA-FS-A1ZF-06 1 44804890 44804890 A G ERI3 Silent p.L106L 0.44 TCGA-FS-A1ZF-06 1 57257803 57257803 G A C1orf168 Missense_Mutation p.P228L 0.45 deleterious(0.03) benign(0.178) TCGA-FS-A1ZF-06 20 16359843 16359843 G A KIF16B Missense_Mutation p.P935L 0.39 tolerated_low_confidence(0.84) benign(0.005) TCGA-FS-A1ZF-06 20 2639058 2639058 T C IDH3B 3'UTR 0.31 TCGA-FS-A1ZF-06 20 29623163 29623163 T C FRG1B 5'UTR 0.05 TCGA-FS-A1ZF-06 20 34611616 34611616 G A CNBD2 Silent p.K450K 0.44 TCGA-FS-A1ZF-06 20 34797622 34797622 C T EPB41L1 Silent p.D627D 0.48 TCGA-FS-A1ZF-06 20 35060232 35060232 G A DLGAP4 Missense_Mutation p.E38K 0.38 deleterious(0.04) benign(0.295) TCGA-FS-A1ZF-06 20 40161876 40161876 C T CHD6 Missense_Mutation p.E123K 0.36 tolerated(0.23) probably_damaging(0.935) TCGA-FS-A1ZF-06 20 42679948 42679948 C T TOX2 Silent p.I138I 0.44 TCGA-FS-A1ZF-06 20 44869687 44869687 G A CDH22 Silent p.I155I 0.40 TCGA-FS-A1ZF-06 20 49195139 49195139 C T PTPN1 Silent p.F225F 0.40 TCGA-FS-A1ZF-06 20 57781968 57781968 G A ZNF831 Missense_Mutation p.G1295E 0.37 deleterious(0.02) benign(0.435) TCGA-FS-A1ZF-06 20 57828962 57828962 C T ZNF831 Missense_Mutation p.P1400S 0.43 tolerated(0.07) possibly_damaging(0.591) TCGA-FS-A1ZF-06 21 15889309 15889309 A G SAMSN1 Silent p.N129N 0.45 TCGA-FS-A1ZF-06 21 41163987 41163987 G A IGSF5 Missense_Mutation p.E337K 0.33 deleterious(0.02) possibly_damaging(0.636) TCGA-FS-A1ZF-06 21 41648035 41648035 A T DSCAM Missense_Mutation p.L782H 0.39 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZF-06 22 16449062 16449062 C T OR11H1 Missense_Mutation p.G248E 0.40 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZF-06 22 22749728 22749728 A C IGLV7-43 Silent p.S84S 0.49 TCGA-FS-A1ZF-06 22 38369715 38369715 G A SOX10 Silent p.S396S 0.53 TCGA-FS-A1ZF-06 22 40056382 40056382 C T CACNA1I Nonsense_Mutation p.Q880* 0.47 TCGA-FS-A1ZF-06 22 41735068 41735068 T A ZC3H7B Missense_Mutation p.F230Y 0.42 tolerated(1) benign(0.146) TCGA-FS-A1ZF-06 22 44280202 44280202 C T PNPLA5 Missense_Mutation p.D325N 0.32 tolerated(0.13) benign(0.048) TCGA-FS-A1ZF-06 22 44280203 44280203 C T PNPLA5 Silent p.R324R 0.33 TCGA-FS-A1ZF-06 2 128930207 128930207 G A UGGT1 Silent p.K1055K 0.43 TCGA-FS-A1ZF-06 2 170027071 170027071 T C LRP2 Silent p.E3790E 0.48 TCGA-FS-A1ZF-06 2 179516450 179516450 G A TTN Missense_Mutation p.P13136S 0.40 TCGA-FS-A1ZF-06 2 179655531 179655531 T C TTN Silent p.V568V 0.44 TCGA-FS-A1ZF-06 2 1843100 1843100 C T MYT1L Silent p.G965G 0.47 TCGA-FS-A1ZF-06 2 201342669 201342669 C T SPATS2L Missense_Mutation p.S531L 0.50 deleterious_low_confidence(0) benign(0.146) TCGA-FS-A1ZF-06 2 21228633 21228633 G A APOB Missense_Mutation p.R3703C 0.45 possibly_damaging(0.676) TCGA-FS-A1ZF-06 2 21236046 21236046 G A APOB Missense_Mutation p.S1401F 0.40 probably_damaging(0.996) TCGA-FS-A1ZF-06 2 240969565 240969565 G A OR6B2 Silent p.F94F 0.21 TCGA-FS-A1ZF-06 2 242063468 242063468 G A PASK Missense_Mutation p.H934Y 0.37 deleterious(0.01) possibly_damaging(0.897) TCGA-FS-A1ZF-06 2 26680871 26680871 G A OTOF 3'UTR 0.51 TCGA-FS-A1ZF-06 2 26698904 26698904 T A OTOF Nonsense_Mutation p.K957* 0.43 TCGA-FS-A1ZF-06 2 70903875 70903875 G A ADD2 Intron 0.54 TCGA-FS-A1ZF-06 3 101044894 101044894 G A SENP7 Missense_Mutation p.H1016Y 0.32 deleterious(0) probably_damaging(0.952) TCGA-FS-A1ZF-06 3 111988825 111988825 A G SLC9C1 Missense_Mutation p.F238S 0.45 deleterious(0) probably_damaging(0.96) TCGA-FS-A1ZF-06 3 11744444 11744444 C A VGLL4 Splice_Site p.X22_splice 0.28 TCGA-FS-A1ZF-06 3 121416835 121416835 C T GOLGB1 Silent p.L845L 0.42 TCGA-FS-A1ZF-06 3 129288764 129288764 G C PLXND1 Missense_Mutation p.L1263V 0.43 tolerated(1) benign(0.008) TCGA-FS-A1ZF-06 3 13896034 13896034 G A WNT7A Nonsense_Mutation p.R189* 0.47 TCGA-FS-A1ZF-06 3 13896035 13896035 G A WNT7A Silent p.G188G 0.47 TCGA-FS-A1ZF-06 3 140178487 140178487 C T CLSTN2 Silent p.V366V 0.51 TCGA-FS-A1ZF-06 3 140401581 140401581 G A TRIM42 Missense_Mutation p.E207K 0.42 tolerated(0.68) benign(0.09) TCGA-FS-A1ZF-06 3 147120535 147120535 C T ZIC4 Missense_Mutation p.R67Q 0.39 tolerated_low_confidence(0.15) possibly_damaging(0.885) TCGA-FS-A1ZF-06 3 16639634 16639634 C T DAZL Missense_Mutation p.E88K 0.38 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZF-06 3 169550902 169550902 T G LRRIQ4 Missense_Mutation p.C487W 0.44 deleterious(0.01) probably_damaging(0.94) TCGA-FS-A1ZF-06 3 170805189 170805189 G A TNIK Missense_Mutation p.P943L 0.42 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A1ZF-06 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.43 tolerated(0.44) benign(0.085) TCGA-FS-A1ZF-06 3 33614720 33614720 T C CLASP2 Missense_Mutation p.M870V 0.46 tolerated(0.18) probably_damaging(0.93) TCGA-FS-A1ZF-06 3 35750473 35750473 C T ARPP21 Intron 0.19 TCGA-FS-A1ZF-06 3 37340796 37340796 G A GOLGA4 Silent p.E362E 0.45 TCGA-FS-A1ZF-06 3 38805031 38805031 A G SCN10A Missense_Mutation p.V219A 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-FS-A1ZF-06 3 40456284 40456284 G A ENTPD3 Missense_Mutation p.V184I 0.41 tolerated(0.4) benign(0.03) TCGA-FS-A1ZF-06 3 54913106 54913106 T A CACNA2D3 Missense_Mutation p.V591E 0.51 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZF-06 3 56044578 56044578 C T ERC2 Missense_Mutation p.D607N 0.36 deleterious(0.01) possibly_damaging(0.497) TCGA-FS-A1ZF-06 4 118975766 118975766 T A NDST3 Missense_Mutation p.I234K 0.52 deleterious(0.01) possibly_damaging(0.602) TCGA-FS-A1ZF-06 4 126412493 126412493 C T FAT4 Missense_Mutation p.S4839F 0.52 probably_damaging(0.996) TCGA-FS-A1ZF-06 4 155465644 155465644 G A PLRG1 Missense_Mutation p.P183S 0.37 tolerated(0.55) benign(0.081) TCGA-FS-A1ZF-06 4 165962255 165962255 G A TRIM60 Missense_Mutation p.R344K 0.37 tolerated(0.28) benign(0.173) TCGA-FS-A1ZF-06 4 166929145 166929145 G A TLL1 Missense_Mutation p.G288R 0.35 deleterious(0.01) possibly_damaging(0.679) TCGA-FS-A1ZF-06 4 169172186 169172186 C T DDX60 Silent p.R1259R 0.35 TCGA-FS-A1ZF-06 4 183673100 183673100 G A TENM3 Silent p.G1259G 0.75 TCGA-FS-A1ZF-06 4 185038027 185038027 G A ENPP6 Silent p.A279A 0.62 TCGA-FS-A1ZF-06 4 185038028 185038028 G A ENPP6 Missense_Mutation p.A279V 0.60 tolerated(0.31) benign(0.04) TCGA-FS-A1ZF-06 4 3158844 3158844 C T HTT Missense_Mutation p.S1224F 0.32 benign(0.361) TCGA-FS-A1ZF-06 4 42466710 42466710 G A ATP8A1 Silent p.I872I 0.39 TCGA-FS-A1ZF-06 4 47322179 47322179 G A GABRB1 Missense_Mutation p.R166Q 0.45 deleterious(0.02) possibly_damaging(0.649) TCGA-FS-A1ZF-06 4 55144155 55144155 G A PDGFRA Missense_Mutation p.G662R 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 4 62813869 62813869 C T LPHN3 Missense_Mutation p.R826C 0.48 deleterious(0) possibly_damaging(0.832) TCGA-FS-A1ZF-06 4 6303014 6303014 G A WFS1 Missense_Mutation p.V498I 0.43 tolerated(0.25) benign(0.006) TCGA-FS-A1ZF-06 4 69964255 69964255 C T UGT2B7 Intron 0.41 TCGA-FS-A1ZF-06 4 76407684 76407684 G A RCHY1 3'UTR 0.61 TCGA-FS-A1ZF-06 4 952010 952010 G A TMEM175 Missense_Mutation p.R414Q 0.32 tolerated(0.36) benign(0.003) TCGA-FS-A1ZF-06 5 115628292 115628292 C T COMMD10 3'UTR 0.42 TCGA-FS-A1ZF-06 5 120021815 120021815 A C PRR16 Missense_Mutation p.H86P 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.742) TCGA-FS-A1ZF-06 5 13700768 13700768 C T DNAH5 Silent p.R4568R 0.38 TCGA-FS-A1ZF-06 5 13753548 13753548 G A DNAH5 Missense_Mutation p.P3556S 0.38 possibly_damaging(0.641) TCGA-FS-A1ZF-06 5 140682512 140682513 - T SLC25A2 3'UTR 0.43 TCGA-FS-A1ZF-06 5 141248874 141248874 C T PCDH1 Missense_Mutation p.G55S 0.89 tolerated(1) probably_damaging(0.994) TCGA-FS-A1ZF-06 5 14471535 14471535 G A TRIO Missense_Mutation p.E1958K 0.43 benign(0.061) TCGA-FS-A1ZF-06 5 1463832 1463832 G A LPCAT1 Silent p.F513F 0.38 TCGA-FS-A1ZF-06 5 147019213 147019213 G A JAKMIP2 Silent p.D504D 0.85 TCGA-FS-A1ZF-06 5 1470956 1470956 G C LPCAT1 Missense_Mutation p.I421M 0.47 tolerated(0.1) benign(0.016) TCGA-FS-A1ZF-06 5 171520823 171520823 A C STK10 Missense_Mutation p.S383A 0.36 tolerated(0.45) benign(0.003) TCGA-FS-A1ZF-06 5 35014170 35014170 C T AGXT2 Missense_Mutation p.D340N 0.45 tolerated(0.09) benign(0.167) TCGA-FS-A1ZF-06 5 36679745 36679745 A T SLC1A3 Missense_Mutation p.I293F 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 6 106553594 106553594 G A PRDM1 Missense_Mutation p.G520E 0.17 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZF-06 6 107006410 107006410 G A AIM1 Missense_Mutation p.G1514E 0.70 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 6 110429744 110429744 G A WASF1 Missense_Mutation p.L137F 0.56 deleterious(0) unknown(0) TCGA-FS-A1ZF-06 6 129571294 129571294 C T LAMA2 Missense_Mutation p.S607L 0.75 deleterious(0.03) benign(0.05) TCGA-FS-A1ZF-06 6 30514975 30514975 G A GNL1 Missense_Mutation p.P452L 0.41 deleterious(0) possibly_damaging(0.616) TCGA-FS-A1ZF-06 6 32118198 32118198 G A PRRT1 Missense_Mutation p.P169S 0.35 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-FS-A1ZF-06 6 35392600 35392600 C T PPARD Intron 0.55 TCGA-FS-A1ZF-06 6 35773635 35773635 G A LHFPL5 Missense_Mutation p.G63D 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZF-06 6 43517301 43517301 C G XPO5 Silent p.R595R 0.50 TCGA-FS-A1ZF-06 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.47 tolerated(0.45) benign(0.018) TCGA-FS-A1ZF-06 6 74229640 74229640 C T EEF1A1 Missense_Mutation p.R37K 0.10 deleterious_low_confidence(0.02) benign(0.144) TCGA-FS-A1ZF-06 6 76712713 76712713 C T IMPG1 Missense_Mutation p.D405N 0.61 deleterious(0.03) possibly_damaging(0.717) TCGA-FS-A1ZF-06 7 100246201 100246201 G A ACTL6B Missense_Mutation p.P216L 0.42 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZF-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZF-06 7 143095018 143095018 G A EPHA1 Missense_Mutation p.P537L 0.39 deleterious(0.03) benign(0.113) TCGA-FS-A1ZF-06 7 143701816 143701816 C A OR6B1 Missense_Mutation p.L243I 0.23 deleterious(0) benign(0.419) TCGA-FS-A1ZF-06 7 150093761 150093761 G A ZNF775 Silent p.G64G 0.54 TCGA-FS-A1ZF-06 7 82582174 82582174 G A PCLO Missense_Mutation p.P2699S 0.55 unknown(0) TCGA-FS-A1ZF-06 7 99261621 99261621 C T CYP3A5 Missense_Mutation p.M256I 0.41 tolerated(1) benign(0.004) TCGA-FS-A1ZF-06 8 103225069 103225069 T C RRM2B Missense_Mutation p.I280V 0.23 tolerated_low_confidence(0.26) benign(0) TCGA-FS-A1ZF-06 8 135649716 135649716 C A ZFAT Nonsense_Mutation p.E146* 0.46 TCGA-FS-A1ZF-06 8 13965704 13965704 C T SGCZ Silent p.P196P 0.45 TCGA-FS-A1ZF-06 8 24254953 24254953 C T ADAMDEC1 Missense_Mutation p.S204L 0.35 tolerated(0.17) benign(0.025) TCGA-FS-A1ZF-06 8 27927077 27927077 C T NUGGC Missense_Mutation p.G81R 0.38 deleterious(0.04) possibly_damaging(0.846) TCGA-FS-A1ZF-06 8 3087730 3087730 C T CSMD1 Missense_Mutation p.D1393N 0.41 probably_damaging(0.964) TCGA-FS-A1ZF-06 9 117568321 117568321 A T TNFSF15 5'UTR 1.00 TCGA-FS-A1ZF-06 9 119158978 119158978 G A PAPPA 3'UTR 0.80 TCGA-FS-A1ZF-06 9 125582721 125582721 G T PDCL Silent p.I183I 0.85 TCGA-FS-A1ZF-06 9 130707123 130707123 G A FAM102A Silent p.I324I 0.85 TCGA-FS-A1ZF-06 9 133738217 133738217 C T ABL1 Missense_Mutation p.A225V 0.68 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZF-06 9 34661981 34661981 A G CCL27 Missense_Mutation p.L100P 0.75 tolerated_low_confidence(0.11) benign(0.004) TCGA-FS-A1ZF-06 9 77377706 77377706 C T TRPM6 Missense_Mutation p.R1294K 0.73 tolerated(0.56) benign(0.001) TCGA-FS-A1ZF-06 9 94499762 94499762 C T ROR2 Missense_Mutation p.R178Q 0.81 tolerated(0.09) benign(0.087) TCGA-FS-A1ZF-06 X 101096531 101096531 C T NXF5 Splice_Site p.X81_splice 0.73 TCGA-FS-A1ZF-06 X 108684598 108684598 G A GUCY2F Silent p.S561S 0.78 TCGA-FS-A1ZF-06 X 13056599 13056599 C T FAM9C Silent p.K154K 0.77 TCGA-FS-A1ZF-06 X 135126865 135126865 G A SLC9A6 Silent p.T696T 0.83 TCGA-FS-A1ZF-06 X 151900372 151900372 G A MAGEA12 Silent p.F143F 0.89 TCGA-FS-A1ZF-06 X 20211670 20211670 T C RPS6KA3 Silent p.E176E 0.89 TCGA-FS-A1ZF-06 X 84510572 84510572 C T ZNF711 Silent p.F129F 0.75 TCGA-FS-A1ZF-06 X 84526085 84526085 G A ZNF711 Missense_Mutation p.G513S 0.97 tolerated(0.08) probably_damaging(1) TCGA-FS-A1ZF-06 X 9716651 9716651 C T GPR143 Missense_Mutation p.E171K 0.74 tolerated(0.05) benign(0.232) TCGA-FS-A1ZG-06 11 34991758 34991758 A C PDHX Missense_Mutation p.T297P 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZG-06 11 64366364 64366364 C A SLC22A12 Missense_Mutation p.R347S 0.46 tolerated(0.1) possibly_damaging(0.599) TCGA-FS-A1ZG-06 11 66109083 66109083 C A BRMS1 Nonsense_Mutation p.E51* 0.09 TCGA-FS-A1ZG-06 11 7982724 7982724 C A NLRP10 Missense_Mutation p.Q145H 0.44 tolerated(0.15) possibly_damaging(0.46) TCGA-FS-A1ZG-06 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.91 deleterious(0) benign(0.361) TCGA-FS-A1ZG-06 14 31602754 31602755 - T HECTD1 Frame_Shift_Ins p.L1236Tfs*10 0.31 TCGA-FS-A1ZG-06 14 64988483 64988483 T A ZBTB1 Silent p.I87I 0.33 TCGA-FS-A1ZG-06 16 4511935 4511935 A G NMRAL1 Missense_Mutation p.L249P 0.43 deleterious(0.05) benign(0.301) TCGA-FS-A1ZG-06 17 49270312 49270312 A G MBTD1 Silent p.R507R 0.40 TCGA-FS-A1ZG-06 17 5084460 5084460 G A ZNF594 3'UTR 0.63 TCGA-FS-A1ZG-06 17 61972893 61972893 C T CSH1 Silent p.S132S 0.35 TCGA-FS-A1ZG-06 17 74625601 74625601 C T ST6GALNAC1 Silent p.P108P 0.48 TCGA-FS-A1ZG-06 18 47812187 47812187 T A CXXC1 Nonsense_Mutation p.K191* 0.42 TCGA-FS-A1ZG-06 18 5969390 5969390 A G L3MBTL4 Splice_Site p.X547_splice 0.09 TCGA-FS-A1ZG-06 18 9887637 9887681 TGACATTCCCAAGTCCCTAGAGGAAGCCATCCCACCCAAGGAGAT - TXNDC2 In_Frame_Del p.L393_S407del 0.13 TCGA-FS-A1ZG-06 19 36640548 36640548 C G CAPNS1 Intron 0.44 TCGA-FS-A1ZG-06 19 54646670 54646670 G A CNOT3 5'UTR 0.48 TCGA-FS-A1ZG-06 19 55739565 55739565 C T TMEM86B Missense_Mutation p.V98I 0.50 tolerated(0.19) benign(0.003) TCGA-FS-A1ZG-06 1 11333715 11333715 A G UBIAD1 Missense_Mutation p.R43G 0.33 tolerated(0.3) benign(0) TCGA-FS-A1ZG-06 1 153043083 153043083 G T SPRR2B 3'UTR 0.56 TCGA-FS-A1ZG-06 1 201868801 201868801 A C LMOD1 Missense_Mutation p.L447R 0.38 probably_damaging(0.999) TCGA-FS-A1ZG-06 1 43917105 43917105 C A HYI Missense_Mutation p.V246L 0.41 deleterious(0.02) possibly_damaging(0.741) TCGA-FS-A1ZG-06 1 53072382 53072382 C T GPX7 Silent p.S55S 0.55 TCGA-FS-A1ZG-06 20 33176297 33176297 G C PIGU Missense_Mutation p.L248V 0.39 tolerated(0.16) probably_damaging(0.985) TCGA-FS-A1ZG-06 20 3515900 3515900 A G ATRN Silent p.R137R 0.37 TCGA-FS-A1ZG-06 20 43353590 43353590 C T WISP2 Silent p.C163C 0.17 TCGA-FS-A1ZG-06 22 37602855 37602855 G A SSTR3 Missense_Mutation p.R330W 0.86 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZG-06 2 149247828 149247828 C T MBD5 Nonsense_Mutation p.Q1310* 0.45 TCGA-FS-A1ZG-06 2 207834026 207834026 G T CPO Nonsense_Mutation p.E331* 0.39 TCGA-FS-A1ZG-06 2 64160813 64160813 T G VPS54 Missense_Mutation p.D578A 0.39 tolerated(0.52) benign(0.013) TCGA-FS-A1ZG-06 3 47882497 47882497 G A DHX30 Missense_Mutation p.R166Q 0.36 tolerated_low_confidence(0.07) benign(0.002) TCGA-FS-A1ZG-06 4 1161418 1161418 C - SPON2 Frame_Shift_Del p.V280Sfs*102 0.17 TCGA-FS-A1ZG-06 4 42051395 42051395 A G SLC30A9 Missense_Mutation p.N247D 0.17 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZG-06 5 112173801 112173801 C G APC Nonsense_Mutation p.S837* 0.47 TCGA-FS-A1ZG-06 5 140604055 140604055 T C PCDHB14 Silent p.G326G 0.10 TCGA-FS-A1ZG-06 5 140750027 140750027 C G PCDHGB3 Silent p.L22L 0.15 TCGA-FS-A1ZG-06 5 42718721 42718721 A C GHR Missense_Mutation p.E371A 0.83 tolerated(0.72) benign(0.099) TCGA-FS-A1ZG-06 6 36467713 36467713 T C STK38 Missense_Mutation p.T297A 0.10 tolerated(0.09) benign(0.142) TCGA-FS-A1ZG-06 6 39041404 39041404 C T GLP1R Silent p.L228L 0.44 TCGA-FS-A1ZG-06 6 54805115 54805115 C T FAM83B Missense_Mutation p.A449V 0.28 tolerated(0.16) benign(0.439) TCGA-FS-A1ZG-06 7 33042361 33042361 G A FKBP9 Silent p.E482E 0.84 TCGA-FS-A1ZG-06 7 56130417 56130418 TA - CCT6A Frame_Shift_Del p.Y498Lfs*21 0.14 TCGA-FS-A1ZG-06 8 125035704 125035704 C T FER1L6 Silent p.D718D 0.38 TCGA-FS-A1ZG-06 8 48840367 48840367 A G PRKDC Silent p.I741I 0.32 TCGA-FS-A1ZG-06 9 105765476 105765476 T C CYLC2 Silent p.F37F 0.29 TCGA-FS-A1ZG-06 X 106109035 106109035 T G TBC1D8B Missense_Mutation p.L812V 0.39 tolerated(0.57) benign(0.002) TCGA-FS-A1ZG-06 X 153227717 153227717 C T HCFC1 Silent p.A251A 0.45 TCGA-FS-A1ZG-06 X 32486764 32486764 C T DMD Missense_Mutation p.E1005K 0.85 possibly_damaging(0.647) TCGA-FS-A1ZG-06 X 48847416 48847416 C T GRIPAP1 Silent p.P188P 0.79 TCGA-FS-A1ZH-06 10 108389146 108389146 C A SORCS1 Missense_Mutation p.G826C 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1ZH-06 10 96829197 96829197 G T CYP2C8 5'UTR 0.22 TCGA-FS-A1ZH-06 10 96829198 96829198 C T CYP2C8 5'UTR 0.20 TCGA-FS-A1ZH-06 11 1491656 1491656 C T MOB2 Missense_Mutation p.V185M 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZH-06 11 62290254 62290254 C G AHNAK Missense_Mutation p.D3879H 0.04 probably_damaging(0.99) TCGA-FS-A1ZH-06 12 96653537 96653537 G A ELK3 Missense_Mutation p.S344N 0.33 deleterious(0) probably_damaging(0.954) TCGA-FS-A1ZH-06 13 28601295 28601295 T C FLT3 Missense_Mutation p.T713A 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-FS-A1ZH-06 13 98645421 98645421 C A IPO5 Silent p.T303T 0.38 TCGA-FS-A1ZH-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.28 TCGA-FS-A1ZH-06 15 51012138 51012138 T A SPPL2A Missense_Mutation p.Q496L 0.20 deleterious(0.03) benign(0.119) TCGA-FS-A1ZH-06 15 64792343 64792343 T C ZNF609 Missense_Mutation p.L242P 0.24 tolerated(0.1) benign(0.011) TCGA-FS-A1ZH-06 15 91496480 91496480 C T UNC45A Silent p.A839A 0.10 TCGA-FS-A1ZH-06 16 64984722 64984722 G T CDH11 Silent p.G614G 0.26 TCGA-FS-A1ZH-06 17 18023082 18023082 C T MYO15A Missense_Mutation p.S323L 0.23 benign(0.021) TCGA-FS-A1ZH-06 17 60600509 60600509 A C TLK2 Silent p.R80R 0.21 TCGA-FS-A1ZH-06 17 72613315 72613315 C G CD300E Missense_Mutation p.W110C 0.19 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZH-06 19 55785939 55785939 G A HSPBP1 Missense_Mutation p.A156V 0.40 tolerated(0.16) benign(0.125) TCGA-FS-A1ZH-06 19 57666725 57666725 G A DUXA Nonsense_Mutation p.R152* 0.17 TCGA-FS-A1ZH-06 1 111773481 111773481 T G CHI3L2 Missense_Mutation p.F63C 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZH-06 1 112308358 112308358 G A DDX20 Splice_Site p.X438_splice 0.35 TCGA-FS-A1ZH-06 1 185704142 185704142 T A HMCN1 Silent p.P77P 0.30 TCGA-FS-A1ZH-06 1 22973839 22973839 C T C1QC Missense_Mutation p.P101S 0.33 tolerated(0.75) benign(0.033) TCGA-FS-A1ZH-06 1 27939461 27939461 G A FGR Silent p.S518S 0.34 TCGA-FS-A1ZH-06 20 35090845 35090845 G A DLGAP4 Intron 0.31 TCGA-FS-A1ZH-06 20 57896118 57896118 G A EDN3 Missense_Mutation p.G138S 0.30 tolerated(0.16) benign(0.119) TCGA-FS-A1ZH-06 20 61143603 61143603 G A C20orf166 5'Flank 0.23 TCGA-FS-A1ZH-06 21 15884826 15884826 C T SAMSN1 Silent p.E184E 0.30 TCGA-FS-A1ZH-06 2 114256766 114256766 C T FOXD4L1 5'UTR 0.07 TCGA-FS-A1ZH-06 2 218757693 218757693 G A TNS1 Missense_Mutation p.H129Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZH-06 2 30785013 30785013 T C LCLAT1 Silent p.G160G 0.23 TCGA-FS-A1ZH-06 2 88474921 88474922 GT - THNSL2 Splice_Site p.X191_splice 0.23 TCGA-FS-A1ZH-06 3 49690423 49690423 G A BSN Missense_Mutation p.R1145Q 0.16 unknown(0) TCGA-FS-A1ZH-06 4 169176878 169176878 C T DDX60 Missense_Mutation p.E1181K 0.18 tolerated(0.5) benign(0.013) TCGA-FS-A1ZH-06 4 186545335 186545335 C T SORBS2 Silent p.E512E 0.19 TCGA-FS-A1ZH-06 5 115167480 115167480 C A ATG12 3'UTR 0.56 TCGA-FS-A1ZH-06 6 111880614 111880615 - GGAACCACCTGTCACAAT TRAF3IP2 Nonsense_Mutation p.P564_L565insL*QVVP 0.08 TCGA-FS-A1ZH-06 6 26413389 26413389 C T BTN3A1 Intron 0.23 TCGA-FS-A1ZH-06 6 38830108 38830108 G A DNAH8 Missense_Mutation p.A1845T 0.32 probably_damaging(0.972) TCGA-FS-A1ZH-06 6 4069856 4069856 C T FAM217A Missense_Mutation p.D201N 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZH-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZH-06 7 154143335 154143335 A G DPP6 Missense_Mutation p.K94E 0.27 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZH-06 7 155530778 155530778 G A RBM33 Missense_Mutation p.S473N 0.25 tolerated(0.13) benign(0.096) TCGA-FS-A1ZH-06 8 109796547 109796547 G A TMEM74 Missense_Mutation p.R261C 0.23 deleterious(0) possibly_damaging(0.903) TCGA-FS-A1ZH-06 8 37729629 37729629 G A RAB11FIP1 Silent p.V897V 0.26 TCGA-FS-A1ZH-06 9 117266602 117266602 C T DFNB31 Silent p.S160S 0.39 TCGA-FS-A1ZH-06 9 127912061 127912061 G A PPP6C Missense_Mutation p.S307L 0.63 deleterious(0.02) benign(0.043) TCGA-FS-A1ZJ-06 10 105331479 105331479 C T NEURL1 Silent p.N183N 0.82 TCGA-FS-A1ZJ-06 10 119768707 119768707 C G RAB11FIP2 Silent p.G447G 0.77 TCGA-FS-A1ZJ-06 10 50530628 50530628 G A C10orf71 Missense_Mutation p.S13N 0.73 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZJ-06 10 73375261 73375261 G A CDH23 Missense_Mutation p.G278E 0.91 tolerated(0.2) probably_damaging(0.997) TCGA-FS-A1ZJ-06 10 93719631 93719633 TGA - BTAF1 In_Frame_Del p.D361del 0.81 TCGA-FS-A1ZJ-06 11 101324406 101324406 A T TRPC6 Missense_Mutation p.D873E 0.70 tolerated(0.16) probably_damaging(0.99) TCGA-FS-A1ZJ-06 11 128786315 128786315 C G KCNJ5 Missense_Mutation p.Q317E 0.91 deleterious(0.02) benign(0.053) TCGA-FS-A1ZJ-06 11 25004713 25004713 C A LUZP2 Nonsense_Mutation p.C213* 0.77 TCGA-FS-A1ZJ-06 11 36596185 36596185 C T RAG1 Missense_Mutation p.A444V 0.74 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-FS-A1ZJ-06 11 76877203 76877203 G A MYO7A Missense_Mutation p.A598T 0.16 tolerated(0.48) probably_damaging(0.981) TCGA-FS-A1ZJ-06 12 132329745 132329745 G C MMP17 Missense_Mutation p.G351R 0.46 deleterious(0) probably_damaging(0.941) TCGA-FS-A1ZJ-06 12 88379686 88379686 G A C12orf50 Missense_Mutation p.T356M 0.42 tolerated(0.06) benign(0.071) TCGA-FS-A1ZJ-06 12 92818809 92818809 G A CLLU1 Missense_Mutation p.R118H 0.42 possibly_damaging(0.711) TCGA-FS-A1ZJ-06 14 45478274 45478274 C - FAM179B Frame_Shift_Del p.Y1021* 0.27 TCGA-FS-A1ZJ-06 14 71568760 71568760 C T PCNX Silent p.A1881A 0.41 TCGA-FS-A1ZJ-06 15 41476511 41476511 T A EXD1 Missense_Mutation p.Q388L 0.85 deleterious(0.01) benign(0.015) TCGA-FS-A1ZJ-06 15 41476512 41476512 G T EXD1 Missense_Mutation p.Q388K 0.86 tolerated(0.26) benign(0.015) TCGA-FS-A1ZJ-06 15 60741574 60741574 G C NARG2 Missense_Mutation p.T531S 0.38 tolerated(0.52) benign(0.003) TCGA-FS-A1ZJ-06 15 70371728 70371755 TGGGCTTACGTTGGGAGAACCTCCTGGT CGGGGTTAAGGTGGGAGAAACCCCTCGC TLE3 Intron 0.09 TCGA-FS-A1ZJ-06 15 85341986 85341986 C T ZNF592 Silent p.A968A 0.36 TCGA-FS-A1ZJ-06 16 20043116 20043116 T A GPR139 Missense_Mutation p.I335F 0.84 deleterious_low_confidence(0) benign(0.422) TCGA-FS-A1ZJ-06 17 39634648 39634648 C T KRT35 Missense_Mutation p.A322T 0.42 tolerated(0.29) benign(0.009) TCGA-FS-A1ZJ-06 17 40986871 40986871 A G PSME3 Missense_Mutation p.N74S 0.41 tolerated(0.11) benign(0.019) TCGA-FS-A1ZJ-06 18 116842 116842 T C ROCK1P1 Intron 0.67 TCGA-FS-A1ZJ-06 18 116843 116843 A T ROCK1P1 Intron 0.65 TCGA-FS-A1ZJ-06 18 50918108 50918108 C A DCC Missense_Mutation p.P847T 0.14 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZJ-06 18 55399064 55399064 G C ATP8B1 Intron 0.47 TCGA-FS-A1ZJ-06 18 70209065 70209065 G T CBLN2 Missense_Mutation p.R111S 0.84 tolerated(0.09) benign(0.107) TCGA-FS-A1ZJ-06 19 10434111 10434111 G A RAVER1 Silent p.F313F 0.28 TCGA-FS-A1ZJ-06 19 16045093 16045093 A G CYP4F11 Silent p.Y42Y 0.29 TCGA-FS-A1ZJ-06 19 1979365 1979365 C T CSNK1G2 Silent p.R272R 0.45 TCGA-FS-A1ZJ-06 19 2109958 2109958 C T AP3D1 Splice_Site p.X1089_splice 0.44 TCGA-FS-A1ZJ-06 19 36243458 36243458 C T LIN37 Intron 0.45 TCGA-FS-A1ZJ-06 19 38877378 38877378 G A GGN Missense_Mutation p.P175L 0.40 tolerated_low_confidence(0.21) unknown(0) TCGA-FS-A1ZJ-06 19 50399210 50399210 C A IL4I1 Missense_Mutation p.Q60H 0.43 tolerated(0.82) benign(0.001) TCGA-FS-A1ZJ-06 19 5714222 5714222 C A LONP1 Missense_Mutation p.V164F 0.32 deleterious(0.02) possibly_damaging(0.721) TCGA-FS-A1ZJ-06 1 151282708 151282708 A T PI4KB Missense_Mutation p.S323R 0.35 tolerated(0.2) benign(0.003) TCGA-FS-A1ZJ-06 1 171254418 171254418 C G FMO1 Missense_Mutation p.A445G 0.06 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZJ-06 1 201398341 201398341 G A RP11-134G8.2 RNA 0.21 TCGA-FS-A1ZJ-06 1 27876994 27876994 G A AHDC1 Missense_Mutation p.R545C 0.33 deleterious(0) possibly_damaging(0.835) TCGA-FS-A1ZJ-06 20 36361338 36361338 C G CTNNBL1 Missense_Mutation p.R30G 0.16 tolerated(0.27) benign(0.04) TCGA-FS-A1ZJ-06 20 52192352 52192352 A T ZNF217 Missense_Mutation p.L984Q 0.74 tolerated(0.07) benign(0.139) TCGA-FS-A1ZJ-06 20 57430051 57430051 C T GNAS Silent p.S577S 0.25 TCGA-FS-A1ZJ-06 21 43508437 43508437 G A UMODL1 Missense_Mutation p.V213I 0.49 tolerated(0.06) benign(0) TCGA-FS-A1ZJ-06 22 32635079 32635079 T C SLC5A4 Splice_Site p.X160_splice 0.86 TCGA-FS-A1ZJ-06 2 103067461 103067461 G A IL18RAP Missense_Mutation p.R455K 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1ZJ-06 2 103068314 103068314 C T IL18RAP Silent p.I491I 0.49 TCGA-FS-A1ZJ-06 2 103068354 103068354 C T IL18RAP Nonsense_Mutation p.Q505* 0.48 TCGA-FS-A1ZJ-06 2 103068368 103068368 C T IL18RAP Silent p.L509L 0.44 TCGA-FS-A1ZJ-06 2 103068392 103068392 C T IL18RAP Silent p.F517F 0.42 TCGA-FS-A1ZJ-06 2 103068417 103068417 C T IL18RAP Missense_Mutation p.L526F 0.38 deleterious(0.01) probably_damaging(0.952) TCGA-FS-A1ZJ-06 2 103068482 103068482 C T IL18RAP Silent p.P547P 0.37 TCGA-FS-A1ZJ-06 2 160734989 160734989 G A LY75-CD302 Silent p.Y540Y 0.41 TCGA-FS-A1ZJ-06 2 211460236 211460236 C T CPS1 Missense_Mutation p.S436L 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZJ-06 2 32368403 32368403 A G SPAST Splice_Site p.X513_splice 0.36 TCGA-FS-A1ZJ-06 2 77746165 77746165 G C LRRTM4 Missense_Mutation p.P277R 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZJ-06 3 113302286 113302286 G A SIDT1 Missense_Mutation p.V260M 0.71 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZJ-06 3 19554767 19554767 A T KCNH8 Missense_Mutation p.K795N 0.43 tolerated(0.09) benign(0.011) TCGA-FS-A1ZJ-06 3 48476289 48476289 C T CCDC51 Missense_Mutation p.D84N 0.13 tolerated(0.07) benign(0.01) TCGA-FS-A1ZJ-06 4 152204317 152204317 A G PRSS48 Missense_Mutation p.D177G 0.50 deleterious(0.01) benign(0.338) TCGA-FS-A1ZJ-06 4 46067380 46067380 C T GABRG1 Splice_Site p.X181_splice 0.38 TCGA-FS-A1ZJ-06 4 46067413 46067413 A C GABRG1 Missense_Mutation p.I170M 0.37 deleterious(0) benign(0.327) TCGA-FS-A1ZJ-06 4 55592183 55592184 - TTGCCC KIT In_Frame_Ins p.Y503delinsFAH 0.43 TCGA-FS-A1ZJ-06 4 6296913 6296913 G A WFS1 Silent p.L286L 0.22 TCGA-FS-A1ZJ-06 5 140027504 140027504 G C IK Missense_Mutation p.R4P 0.10 deleterious_low_confidence(0.01) benign(0.249) TCGA-FS-A1ZJ-06 5 164028160 164028160 C T CTC-340A15.2 RNA 0.40 TCGA-FS-A1ZJ-06 5 79616044 79616044 T A SPZ1 Missense_Mutation p.S4T 0.43 tolerated(0.65) benign(0.306) TCGA-FS-A1ZJ-06 5 884140 884140 A G BRD9 Silent p.S293S 0.26 TCGA-FS-A1ZJ-06 6 29394894 29394894 A T OR11A1 Silent p.I175I 0.45 TCGA-FS-A1ZJ-06 6 31783386 31783386 A T HSPA1A 5'UTR 0.60 TCGA-FS-A1ZJ-06 6 42689566 42689566 G A PRPH2 Silent p.N169N 0.31 TCGA-FS-A1ZJ-06 6 43139845 43139845 A C SRF Missense_Mutation p.I151L 0.11 deleterious(0) benign(0) TCGA-FS-A1ZJ-06 6 49936566 49936566 T - DEFB113 Frame_Shift_Del p.T25Qfs*? 0.26 TCGA-FS-A1ZJ-06 6 56496732 56496732 G C DST Silent p.P767P 0.21 TCGA-FS-A1ZJ-06 6 56504763 56504763 T C DST Silent p.E324E 0.27 TCGA-FS-A1ZJ-06 6 96651149 96651149 C A FUT9 Missense_Mutation p.P40T 0.76 deleterious(0.03) possibly_damaging(0.544) TCGA-FS-A1ZJ-06 7 129091519 129091519 G A STRIP2 Missense_Mutation p.D114N 0.57 tolerated(0.08) benign(0.062) TCGA-FS-A1ZJ-06 7 149519711 149519711 G A SSPO RNA 0.64 TCGA-FS-A1ZJ-06 7 54612392 54612392 G C VSTM2A Missense_Mutation p.G53R 0.10 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZJ-06 9 130580876 130580876 C T ENG Intron 0.27 TCGA-FS-A1ZJ-06 9 96850154 96850154 A T PTPDC1 Missense_Mutation p.E151V 0.39 tolerated(0.06) benign(0.281) TCGA-FS-A1ZJ-06 9 99233343 99233343 C A HABP4 Missense_Mutation p.S265Y 0.36 deleterious(0.03) benign(0.285) TCGA-FS-A1ZJ-06 X 106397458 106397458 C G NUP62CL Silent p.V71V 0.22 TCGA-FS-A1ZJ-06 X 150911807 150911807 C G CNGA2 Missense_Mutation p.L278V 0.17 tolerated(0.17) probably_damaging(0.999) TCGA-FS-A1ZJ-06 X 19389081 19389081 G A MAP3K15 Silent p.I1132I 0.43 TCGA-FS-A1ZJ-06 X 23018497 23018497 C G DDX53 Missense_Mutation p.A108G 0.14 tolerated(0.12) possibly_damaging(0.45) TCGA-FS-A1ZJ-06 X 47919835 47919835 A T ZNF630 Missense_Mutation p.Y78N 0.45 tolerated(0.24) benign(0.001) TCGA-FS-A1ZJ-06 X 66765795 66765795 C T AR Silent p.Y269Y 0.35 TCGA-FS-A1ZK-06 10 102266174 102266174 C T SEC31B Silent p.G262G 0.37 TCGA-FS-A1ZK-06 10 103342749 103342749 G C POLL Intron 0.62 TCGA-FS-A1ZK-06 10 103348032 103348032 G A DPCD 5'Flank 0.75 TCGA-FS-A1ZK-06 10 104103904 104103904 C T GBF1 Missense_Mutation p.T87I 0.39 deleterious(0) benign(0.258) TCGA-FS-A1ZK-06 10 104596920 104596920 G A CYP17A1 Missense_Mutation p.R67C 0.36 tolerated(0.15) probably_damaging(0.97) TCGA-FS-A1ZK-06 10 105798213 105798213 G A COL17A1 Silent p.I1007I 0.64 TCGA-FS-A1ZK-06 10 1070537 1070537 C T IDI2 Missense_Mutation p.E43K 0.52 tolerated(0.1) benign(0.016) TCGA-FS-A1ZK-06 10 108339231 108339231 G A SORCS1 Silent p.A1089A 0.27 TCGA-FS-A1ZK-06 10 115526193 115526193 G A PLEKHS1 Missense_Mutation p.E12K 0.27 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZK-06 10 116049153 116049153 G A VWA2 Missense_Mutation p.R676Q 0.19 tolerated(0.31) benign(0.033) TCGA-FS-A1ZK-06 10 116735263 116735263 C T TRUB1 3'UTR 0.38 TCGA-FS-A1ZK-06 10 120450808 120450808 G A CACUL1 Nonsense_Mutation p.Q332* 0.42 TCGA-FS-A1ZK-06 10 121214601 121214601 C T GRK5 3'UTR 0.35 TCGA-FS-A1ZK-06 10 124352006 124352006 G A DMBT1 Missense_Mutation p.D799N 0.44 tolerated(0.28) unknown(0) TCGA-FS-A1ZK-06 10 126490351 126490351 G A FAM175B 5'Flank 0.36 TCGA-FS-A1ZK-06 10 127755327 127755327 C T ADAM12 Missense_Mutation p.D461N 0.33 tolerated(0.07) possibly_damaging(0.9) TCGA-FS-A1ZK-06 10 127755328 127755328 C T ADAM12 Silent p.P460P 0.33 TCGA-FS-A1ZK-06 10 12867816 12867816 C T CAMK1D Intron 0.53 TCGA-FS-A1ZK-06 10 129537088 129537088 C T FOXI2 Silent p.F272F 0.33 TCGA-FS-A1ZK-06 10 129859200 129859200 C T PTPRE Intron 0.33 TCGA-FS-A1ZK-06 10 131761695 131761695 T C EBF3 Missense_Mutation p.D76G 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 10 131958313 131958313 C T GLRX3 Missense_Mutation p.P86S 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 10 133107460 133107460 G A TCERG1L Missense_Mutation p.P149S 0.39 tolerated(0.09) benign(0.03) TCGA-FS-A1ZK-06 10 15255082 15255082 C T FAM171A1 Silent p.T835T 0.48 TCGA-FS-A1ZK-06 10 15614220 15614220 T C ITGA8 Missense_Mutation p.Q876R 0.36 tolerated(0.17) benign(0.102) TCGA-FS-A1ZK-06 10 18690937 18690937 G A CACNB2 Missense_Mutation p.E100K 0.24 deleterious(0.01) possibly_damaging(0.581) TCGA-FS-A1ZK-06 10 21106570 21106570 C T NEBL Missense_Mutation p.E703K 0.30 deleterious(0.02) possibly_damaging(0.621) TCGA-FS-A1ZK-06 10 29710357 29710357 C T PTCHD3P1 RNA 0.54 TCGA-FS-A1ZK-06 10 31791374 31791374 C T ZEB1 Missense_Mutation p.P141S 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1ZK-06 10 31810768 31810768 G A ZEB1 Silent p.T836T 0.47 TCGA-FS-A1ZK-06 10 37436309 37436309 G A ANKRD30A Silent p.E433E 0.30 TCGA-FS-A1ZK-06 10 43016537 43016537 A G ZNF37BP RNA 0.35 TCGA-FS-A1ZK-06 10 45642855 45642855 C T RP11-445N18.7 RNA 0.40 TCGA-FS-A1ZK-06 10 45924071 45924071 G A ALOX5 Silent p.G280G 0.39 TCGA-FS-A1ZK-06 10 49687791 49687791 C T ARHGAP22 Silent p.R113R 0.50 TCGA-FS-A1ZK-06 10 50531928 50531928 C T C10orf71 Silent p.L446L 0.40 TCGA-FS-A1ZK-06 10 52008332 52008332 C T ASAH2 Silent p.L13L 0.36 TCGA-FS-A1ZK-06 10 52390795 52390795 C T RP11-50E11.3 RNA 0.24 TCGA-FS-A1ZK-06 10 54074346 54074346 G A DKK1 Missense_Mutation p.G51D 0.32 deleterious(0.01) benign(0.024) TCGA-FS-A1ZK-06 10 55944921 55944921 C T PCDH15 Silent p.R471R 0.47 TCGA-FS-A1ZK-06 10 61022203 61022203 C T FAM13C Silent p.E409E 0.41 TCGA-FS-A1ZK-06 10 61413888 61413888 G A SLC16A9 Missense_Mutation p.A299V 0.48 tolerated(0.1) benign(0.003) TCGA-FS-A1ZK-06 10 61829952 61829952 C T ANK3 Missense_Mutation p.E3563K 0.54 benign(0.023) TCGA-FS-A1ZK-06 10 61835777 61835777 G A ANK3 Missense_Mutation p.S1621F 0.43 benign(0.367) TCGA-FS-A1ZK-06 10 61898772 61898772 G A ANK3 Silent p.S896S 0.45 TCGA-FS-A1ZK-06 10 70405173 70405173 C T TET1 Missense_Mutation p.A896V 0.39 deleterious(0.03) possibly_damaging(0.904) TCGA-FS-A1ZK-06 10 70441247 70441247 T G TET1 Splice_Site p.X1638_splice 0.29 TCGA-FS-A1ZK-06 10 72358711 72358711 C T PRF1 Missense_Mutation p.D256N 0.32 deleterious(0.02) benign(0.161) TCGA-FS-A1ZK-06 10 72358712 72358712 C T PRF1 Silent p.E255E 0.32 TCGA-FS-A1ZK-06 10 72360558 72360558 C T PRF1 Missense_Mutation p.S34N 0.38 tolerated(0.72) benign(0.001) TCGA-FS-A1ZK-06 10 75529739 75529739 C T SEC24C Missense_Mutation p.T943I 0.39 deleterious(0.03) possibly_damaging(0.9) TCGA-FS-A1ZK-06 10 81697941 81697941 G A SFTPD Silent p.F265F 0.35 TCGA-FS-A1ZK-06 10 85972966 85972966 C T CDHR1 Silent p.S634S 0.44 TCGA-FS-A1ZK-06 10 88416026 88416026 G A OPN4 Missense_Mutation p.G87S 0.36 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 10 89475534 89475534 C T PAPSS2 Missense_Mutation p.P267S 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZK-06 10 90436022 90436022 G A LIPF Silent p.R325R 0.42 TCGA-FS-A1ZK-06 10 91222222 91222222 C T SLC16A12 Silent p.R38R 0.33 TCGA-FS-A1ZK-06 10 95347351 95347351 G A FFAR4 Silent p.S373S 0.59 TCGA-FS-A1ZK-06 10 95372854 95372854 G A PDE6C Silent p.E124E 0.39 TCGA-FS-A1ZK-06 10 97602187 97602187 C T ENTPD1 Missense_Mutation p.P129S 0.36 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 10 99141234 99141234 G A RRP12 Silent p.L443L 0.65 TCGA-FS-A1ZK-06 10 99770962 99770962 G A CRTAC1 Nonsense_Mutation p.Q53* 0.40 TCGA-FS-A1ZK-06 11 100170010 100170010 C T CNTN5 Silent p.F834F 0.90 TCGA-FS-A1ZK-06 11 103194685 103194685 C T DYNC2H1 Silent p.I4009I 0.76 TCGA-FS-A1ZK-06 11 103907797 103907797 C T DDI1 Missense_Mutation p.R83W 0.38 deleterious(0.03) benign(0.015) TCGA-FS-A1ZK-06 11 10824772 10824772 G A EIF4G2 Missense_Mutation p.R295C 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 11 1102137 1102137 G A MUC2 Silent p.V2591V 0.47 TCGA-FS-A1ZK-06 11 113130934 113130934 C T NCAM1 Silent p.L723L 0.24 TCGA-FS-A1ZK-06 11 116649571 116649571 C T ZNF259 3'UTR 0.44 TCGA-FS-A1ZK-06 11 117329477 117329477 C T DSCAML1 Silent p.K1247K 0.47 TCGA-FS-A1ZK-06 11 117864127 117864127 T A IL10RA Splice_Site p.X179_splice 0.74 TCGA-FS-A1ZK-06 11 119027719 119027719 C T ABCG4 Missense_Mutation p.P355S 0.90 tolerated(0.9) benign(0.001) TCGA-FS-A1ZK-06 11 119059864 119059864 G A PDZD3 Missense_Mutation p.A480T 0.44 tolerated(0.14) benign(0.031) TCGA-FS-A1ZK-06 11 12023884 12023884 C T DKK3 Missense_Mutation p.G105E 0.45 deleterious(0.05) benign(0.224) TCGA-FS-A1ZK-06 11 120744880 120744880 G A GRIK4 Missense_Mutation p.A338T 0.27 tolerated(0.62) benign(0.015) TCGA-FS-A1ZK-06 11 120998869 120998869 C T TECTA Missense_Mutation p.S728F 0.51 tolerated(0.23) benign(0.003) TCGA-FS-A1ZK-06 11 121178097 121178097 C T SC5D Missense_Mutation p.S259F 0.48 deleterious(0.02) possibly_damaging(0.602) TCGA-FS-A1ZK-06 11 1213324 1213324 G A MUC5AC RNA 0.25 TCGA-FS-A1ZK-06 11 12270730 12270730 G A MICAL2 Splice_Site p.X929_splice 0.26 TCGA-FS-A1ZK-06 11 122817290 122817290 A G C11orf63 Silent p.Q573Q 0.93 TCGA-FS-A1ZK-06 11 123753985 123753985 C T TMEM225 Missense_Mutation p.E180K 0.90 tolerated(0.38) benign(0.012) TCGA-FS-A1ZK-06 11 124310103 124310103 C T OR8B8 Silent p.R293R 0.47 TCGA-FS-A1ZK-06 11 124440145 124440145 G A OR8A1 Missense_Mutation p.G61S 0.30 deleterious(0.05) probably_damaging(1) TCGA-FS-A1ZK-06 11 124440146 124440146 G A OR8A1 Missense_Mutation p.G61D 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 11 125448110 125448110 C T EI24 Missense_Mutation p.P133L 0.43 tolerated(0.07) benign(0.099) TCGA-FS-A1ZK-06 11 125448111 125448111 C T EI24 Silent p.P133P 0.44 TCGA-FS-A1ZK-06 11 125859626 125859626 G A CDON Silent p.H893H 0.83 TCGA-FS-A1ZK-06 11 12901188 12901188 T G TEAD1 Intron 0.33 TCGA-FS-A1ZK-06 11 17418475 17418475 G A ABCC8 Silent p.A1369A 0.47 TCGA-FS-A1ZK-06 11 17436131 17436131 G A ABCC8 Missense_Mutation p.S773L 0.43 deleterious(0.01) possibly_damaging(0.716) TCGA-FS-A1ZK-06 11 18421065 18421065 C T LDHA Missense_Mutation p.L101F 0.49 tolerated(0.13) benign(0.306) TCGA-FS-A1ZK-06 11 18610251 18610251 C T UEVLD 5'Flank 0.40 TCGA-FS-A1ZK-06 11 1862718 1862718 G A TNNI2 Silent p.R162R 0.37 TCGA-FS-A1ZK-06 11 22397614 22397614 G A SLC17A6 Missense_Mutation p.G421R 0.39 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZK-06 11 22646373 22646373 G A FANCF Silent p.A328A 0.38 TCGA-FS-A1ZK-06 11 294569 294569 C T ATHL1 Silent p.S678S 0.54 TCGA-FS-A1ZK-06 11 30032383 30032383 C T KCNA4 Missense_Mutation p.E615K 0.42 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-FS-A1ZK-06 11 30925117 30925117 A G DCDC1 Silent p.D1474D 0.40 TCGA-FS-A1ZK-06 11 3125455 3125455 G A OSBPL5 Silent p.S404S 0.49 TCGA-FS-A1ZK-06 11 32623815 32623815 C T CCDC73 3'UTR 0.41 TCGA-FS-A1ZK-06 11 33564018 33564018 C T KIAA1549L Silent p.S6S 0.17 TCGA-FS-A1ZK-06 11 33790420 33790420 G A FBXO3 Missense_Mutation p.P112L 0.19 deleterious(0) benign(0.407) TCGA-FS-A1ZK-06 11 34135386 34135386 G A NAT10 Splice_Site p.X165_splice 0.70 TCGA-FS-A1ZK-06 11 4410955 4410955 C T TRIM21 Missense_Mutation p.E145K 0.52 tolerated(1) benign(0) TCGA-FS-A1ZK-06 11 45226312 45226312 C T PRDM11 Silent p.T179T 0.40 TCGA-FS-A1ZK-06 11 45832552 45832552 C T SLC35C1 Missense_Mutation p.A254V 0.44 tolerated(0.38) benign(0.001) TCGA-FS-A1ZK-06 11 46625266 46625266 G A HARBI1 Silent p.S288S 0.50 TCGA-FS-A1ZK-06 11 46637407 46637407 G A HARBI1 Silent p.S127S 0.36 TCGA-FS-A1ZK-06 11 46637408 46637408 G A HARBI1 Missense_Mutation p.S127F 0.35 deleterious(0.01) benign(0.305) TCGA-FS-A1ZK-06 11 46784543 46784543 G A CKAP5 Missense_Mutation p.P1292S 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 11 47356689 47356689 C T MYBPC3 Missense_Mutation p.G937R 0.45 deleterious(0.02) possibly_damaging(0.525) TCGA-FS-A1ZK-06 11 4869588 4869588 G A OR51S1 Missense_Mutation p.S284F 0.36 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZK-06 11 49168382 49168382 C G FOLH1 Missense_Mutation p.E727Q 0.42 tolerated(0.08) probably_damaging(0.955) TCGA-FS-A1ZK-06 11 49229944 49229944 G A FOLH1 Silent p.H6H 0.35 TCGA-FS-A1ZK-06 11 5373580 5373580 C T OR51B6 Silent p.F281F 0.32 TCGA-FS-A1ZK-06 11 55036761 55036761 G A TRIM48 Missense_Mutation p.A208T 0.49 tolerated(0.07) benign(0.001) TCGA-FS-A1ZK-06 11 55578978 55578978 C T OR5L1 Silent p.F12F 0.18 TCGA-FS-A1ZK-06 11 55761646 55761646 C T OR5F1 Silent p.G152G 0.23 TCGA-FS-A1ZK-06 11 55872764 55872764 C T OR8H2 Silent p.T82T 0.13 TCGA-FS-A1ZK-06 11 55890068 55890068 T A OR8H3 Missense_Mutation p.Y74N 0.16 deleterious(0) possibly_damaging(0.762) TCGA-FS-A1ZK-06 11 55890640 55890640 G A OR8H3 Silent p.K264K 0.10 TCGA-FS-A1ZK-06 11 56128611 56128611 G A OR8J1 Missense_Mutation p.D297N 0.11 deleterious(0.01) benign(0.049) TCGA-FS-A1ZK-06 11 56128658 56128658 C T OR8J1 Silent p.S312S 0.10 TCGA-FS-A1ZK-06 11 56237335 56237335 G A OR5M3 Silent p.I213I 0.08 TCGA-FS-A1ZK-06 11 56310479 56310479 G A OR5M11 Silent p.I85I 0.07 TCGA-FS-A1ZK-06 11 5631789 5631789 G A TRIM6 Nonsense_Mutation p.W328* 0.49 TCGA-FS-A1ZK-06 11 56345099 56345099 C T OR5M10 Silent p.A33A 0.22 TCGA-FS-A1ZK-06 11 57003372 57003372 G A APLNR Silent p.S369S 0.19 TCGA-FS-A1ZK-06 11 57077309 57077309 C T TNKS1BP1 Missense_Mutation p.R959K 0.46 tolerated(0.58) benign(0) TCGA-FS-A1ZK-06 11 57080341 57080341 G A TNKS1BP1 Silent p.T607T 0.24 TCGA-FS-A1ZK-06 11 57137411 57137411 G A P2RX3 Missense_Mutation p.D379N 0.15 tolerated(0.3) benign(0.002) TCGA-FS-A1ZK-06 11 57367838 57367838 C T SERPING1 Nonsense_Mutation p.Q180* 0.24 TCGA-FS-A1ZK-06 11 57799105 57799105 G A OR6Q1 Nonsense_Mutation p.W227* 0.49 TCGA-FS-A1ZK-06 11 57799156 57799156 C T OR6Q1 Silent p.T244T 0.25 TCGA-FS-A1ZK-06 11 57947001 57947001 C T OR9Q1 Missense_Mutation p.L29F 0.21 tolerated(0.24) benign(0.012) TCGA-FS-A1ZK-06 11 57970829 57970829 G A OR1S2 Silent p.P275P 0.50 TCGA-FS-A1ZK-06 11 58962828 58962828 C T DTX4 Missense_Mutation p.P508S 0.17 tolerated(0.25) benign(0.14) TCGA-FS-A1ZK-06 11 58978379 58978379 C T MPEG1 Missense_Mutation p.G654R 0.33 deleterious(0.03) benign(0.132) TCGA-FS-A1ZK-06 11 5905976 5905976 G A OR52E4 Missense_Mutation p.G152R 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-FS-A1ZK-06 11 59949119 59949119 C T MS4A6A Missense_Mutation p.E56K 0.41 tolerated(0.99) benign(0.004) TCGA-FS-A1ZK-06 11 60668840 60668840 C T PRPF19 Missense_Mutation p.R190K 0.39 deleterious(0.02) benign(0.125) TCGA-FS-A1ZK-06 11 61042021 61042021 C T VWCE Missense_Mutation p.G511R 0.53 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 11 61048115 61048115 C T VWCE Silent p.G435G 0.39 TCGA-FS-A1ZK-06 11 61250166 61250166 G A PPP1R32 Silent p.Q89Q 0.46 TCGA-FS-A1ZK-06 11 61507082 61507082 C A DAGLA Missense_Mutation p.P601Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 11 617422 617422 C T CDHR5 Missense_Mutation p.D823N 0.40 tolerated(0.29) unknown(0) TCGA-FS-A1ZK-06 11 6191512 6191512 G A OR52B2 Silent p.V15V 0.36 TCGA-FS-A1ZK-06 11 62159581 62159581 C T ASRGL1 Missense_Mutation p.S251L 0.35 deleterious(0) possibly_damaging(0.612) TCGA-FS-A1ZK-06 11 62295771 62295771 G A AHNAK Missense_Mutation p.H2040Y 0.39 possibly_damaging(0.609) TCGA-FS-A1ZK-06 11 62296260 62296260 C T AHNAK Missense_Mutation p.V1877M 0.41 possibly_damaging(0.781) TCGA-FS-A1ZK-06 11 62382274 62382274 G A ROM1 Missense_Mutation p.G340E 0.40 tolerated(1) benign(0) TCGA-FS-A1ZK-06 11 62455825 62455825 G A LRRN4CL Silent p.H52H 0.30 TCGA-FS-A1ZK-06 11 62474622 62474633 CTTTTTCCCCAG - BSCL2 In_Frame_Del p.A12_K15del 0.22 TCGA-FS-A1ZK-06 11 6292161 6292161 G A CCKBR Intron 0.40 TCGA-FS-A1ZK-06 11 6292162 6292162 G A CCKBR Intron 0.40 TCGA-FS-A1ZK-06 11 62951205 62951205 C T SLC22A25 Silent p.R305R 0.45 TCGA-FS-A1ZK-06 11 64132833 64132833 C T RPS6KA4 Missense_Mutation p.R323C 0.39 deleterious(0.03) possibly_damaging(0.726) TCGA-FS-A1ZK-06 11 64337277 64337277 C T SLC22A11 Silent p.L512L 0.80 TCGA-FS-A1ZK-06 11 66191616 66191616 G A NPAS4 Missense_Mutation p.D419N 0.45 tolerated(0.46) benign(0.075) TCGA-FS-A1ZK-06 11 66298428 66298428 C T BBS1 Missense_Mutation p.P513S 0.27 tolerated(0.1) benign(0.076) TCGA-FS-A1ZK-06 11 66617702 66617702 C T PC Missense_Mutation p.D903N 0.33 deleterious(0.04) possibly_damaging(0.875) TCGA-FS-A1ZK-06 11 67219903 67219903 G A GPR152 Missense_Mutation p.P98L 0.17 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 11 67287268 67287268 G A CABP2 Silent p.F211F 0.38 TCGA-FS-A1ZK-06 11 67353865 67353865 C T GSTP1 Silent p.S150S 0.19 TCGA-FS-A1ZK-06 11 67353922 67353922 C T GSTP1 Silent p.G169G 0.24 TCGA-FS-A1ZK-06 11 68115509 68115509 G A LRP5 Missense_Mutation p.G96R 0.44 tolerated(0.1) benign(0.288) TCGA-FS-A1ZK-06 11 68153959 68153959 C T LRP5 Silent p.I397I 0.19 TCGA-FS-A1ZK-06 11 68529011 68529011 G A CPT1A Missense_Mutation p.L674F 0.68 deleterious(0.03) probably_damaging(0.95) TCGA-FS-A1ZK-06 11 70333095 70333095 G A SHANK2 Silent p.A1102A 0.06 TCGA-FS-A1ZK-06 11 70333519 70333519 G A SHANK2 Missense_Mutation p.S961F 0.07 tolerated(0.06) benign(0.31) TCGA-FS-A1ZK-06 11 70336491 70336491 G A SHANK2 Missense_Mutation p.S815F 0.09 deleterious(0) benign(0.32) TCGA-FS-A1ZK-06 11 7111152 7111152 C T RBMXL2 Silent p.D267D 0.30 TCGA-FS-A1ZK-06 11 72406094 72406094 G A ARAP1 Missense_Mutation p.R1209C 0.61 deleterious(0.02) possibly_damaging(0.581) TCGA-FS-A1ZK-06 11 73686070 73686070 G A UCP2 Silent p.S304S 0.46 TCGA-FS-A1ZK-06 11 75431028 75431028 C T MOGAT2 Intron 0.30 TCGA-FS-A1ZK-06 11 75501774 75501774 C T DGAT2 Nonsense_Mutation p.Q143* 0.22 TCGA-FS-A1ZK-06 11 75509329 75509329 C G DGAT2 Missense_Mutation p.I289M 0.22 deleterious(0.03) possibly_damaging(0.722) TCGA-FS-A1ZK-06 11 76885807 76885807 C T MYO7A Silent p.F647F 0.70 TCGA-FS-A1ZK-06 11 8118894 8118894 C T TUB Silent p.I324I 0.37 TCGA-FS-A1ZK-06 11 8704345 8704345 C T RPL27A 5'UTR 0.51 TCGA-FS-A1ZK-06 11 9074719 9074719 G A SCUBE2 Silent p.S458S 0.31 TCGA-FS-A1ZK-06 11 9111275 9111275 C T SCUBE2 Missense_Mutation p.G79R 0.49 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZK-06 11 9164310 9164310 G A DENND5A Missense_Mutation p.S1157L 0.47 deleterious(0) probably_damaging(0.943) TCGA-FS-A1ZK-06 11 93797567 93797567 G A HEPHL1 Silent p.V233V 0.55 TCGA-FS-A1ZK-06 12 100709333 100709333 C T SCYL2 Intron 0.32 TCGA-FS-A1ZK-06 12 100720500 100720500 C T SCYL2 Missense_Mutation p.S537F 0.33 deleterious(0) possibly_damaging(0.665) TCGA-FS-A1ZK-06 12 100751232 100751232 G A SLC17A8 Silent p.V21V 0.22 TCGA-FS-A1ZK-06 12 100784803 100784803 G A SLC17A8 Missense_Mutation p.E127K 0.28 tolerated(0.16) probably_damaging(0.999) TCGA-FS-A1ZK-06 12 10339122 10339122 C T TMEM52B Missense_Mutation p.P61S 0.42 tolerated(0.25) benign(0.248) TCGA-FS-A1ZK-06 12 104014257 104014257 G A STAB2 Missense_Mutation p.G115R 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-FS-A1ZK-06 12 104042572 104042572 G A STAB2 Missense_Mutation p.G382E 0.33 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 12 105591619 105591619 C T APPL2 Missense_Mutation p.D332N 0.25 tolerated(0.08) possibly_damaging(0.761) TCGA-FS-A1ZK-06 12 10587971 10587971 G A KLRC2 Silent p.L76L 0.34 TCGA-FS-A1ZK-06 12 107391350 107391350 T A CRY1 Missense_Mutation p.M470L 0.24 deleterious(0.01) benign(0.142) TCGA-FS-A1ZK-06 12 107391385 107391385 G A CRY1 Missense_Mutation p.A458V 0.21 deleterious(0.02) possibly_damaging(0.597) TCGA-FS-A1ZK-06 12 108051454 108051454 C T BTBD11 Nonsense_Mutation p.Q1092* 0.28 TCGA-FS-A1ZK-06 12 108634201 108634201 G A WSCD2 Missense_Mutation p.E409K 0.32 deleterious(0.01) benign(0.403) TCGA-FS-A1ZK-06 12 10954787 10954787 C T TAS2R7 Missense_Mutation p.R128K 0.57 tolerated(0.31) benign(0.01) TCGA-FS-A1ZK-06 12 109879455 109879455 G A MYO1H Silent p.R842R 0.12 TCGA-FS-A1ZK-06 12 110252389 110252389 G A TRPV4 Silent p.F71F 0.22 TCGA-FS-A1ZK-06 12 11035044 11035044 C T PRH1 Silent p.Q97Q 0.18 TCGA-FS-A1ZK-06 12 110429562 110429562 G A GIT2 Missense_Mutation p.P19L 0.26 deleterious(0.02) possibly_damaging(0.697) TCGA-FS-A1ZK-06 12 111085590 111085590 A G TCTN1 Missense_Mutation p.T558A 0.29 deleterious(0) possibly_damaging(0.624) TCGA-FS-A1ZK-06 12 111785550 111785550 C T CUX2 Silent p.A1294A 0.15 TCGA-FS-A1ZK-06 12 113717964 113717964 A G TPCN1 Missense_Mutation p.I508V 0.23 tolerated(0.32) benign(0.02) TCGA-FS-A1ZK-06 12 11420678 11420678 C T PRB3 Missense_Mutation p.G169R 0.36 tolerated(0.4) unknown(0) TCGA-FS-A1ZK-06 12 117768218 117768218 C T NOS1 Silent p.G219G 0.31 TCGA-FS-A1ZK-06 12 12044024 12044024 C T ETV6 3'UTR 0.29 TCGA-FS-A1ZK-06 12 120502557 120502557 G A CCDC64 Silent p.R261R 0.31 TCGA-FS-A1ZK-06 12 120650090 120650091 - G PXN 3'UTR 0.30 TCGA-FS-A1ZK-06 12 120741753 120741753 C T SIRT4 Missense_Mutation p.T130I 0.25 tolerated(0.11) benign(0.018) TCGA-FS-A1ZK-06 12 120794811 120794811 C T MSI1 Silent p.K182K 0.32 TCGA-FS-A1ZK-06 12 121605371 121605371 C T P2RX7 Silent p.F275F 0.25 TCGA-FS-A1ZK-06 12 121605372 121605372 C T P2RX7 Missense_Mutation p.R276C 0.25 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZK-06 12 121867907 121867907 G A KDM2B 3'UTR 0.27 TCGA-FS-A1ZK-06 12 12247624 12247624 C A BCL2L14 Silent p.G235G 0.45 TCGA-FS-A1ZK-06 12 122658709 122658709 T G IL31 Missense_Mutation p.H4P 0.24 deleterious(0.01) possibly_damaging(0.635) TCGA-FS-A1ZK-06 12 122750878 122750878 G A VPS33A Silent p.F26F 0.30 TCGA-FS-A1ZK-06 12 123186926 123186926 G A HCAR2 Missense_Mutation p.P302L 0.14 deleterious(0) benign(0.074) TCGA-FS-A1ZK-06 12 123892187 123892187 C T SETD8 Silent p.L332L 0.22 TCGA-FS-A1ZK-06 12 124284800 124284800 G A DNAH10 Missense_Mutation p.R658K 0.22 benign(0.002) TCGA-FS-A1ZK-06 12 124284801 124284801 G A DNAH10 Silent p.R658R 0.22 TCGA-FS-A1ZK-06 12 124298047 124298047 G A DNAH10 Missense_Mutation p.D1043N 0.23 benign(0.012) TCGA-FS-A1ZK-06 12 124377950 124377950 G A DNAH10 Missense_Mutation p.D2938N 0.28 possibly_damaging(0.58) TCGA-FS-A1ZK-06 12 125834710 125834710 C T TMEM132B Silent p.A255A 0.26 TCGA-FS-A1ZK-06 12 130648609 130648609 G A FZD10 Silent p.R374R 0.27 TCGA-FS-A1ZK-06 12 130927115 130927115 C T RIMBP2 Missense_Mutation p.G244E 0.20 tolerated(0.2) benign(0.041) TCGA-FS-A1ZK-06 12 131471650 131471650 G A GPR133 Nonsense_Mutation p.W167* 0.29 TCGA-FS-A1ZK-06 12 132238958 132238958 C T SFSWAP Silent p.V456V 0.27 TCGA-FS-A1ZK-06 12 132471241 132471241 C T EP400 Silent p.S704S 0.31 TCGA-FS-A1ZK-06 12 1904487 1904487 G A CACNA2D4 Missense_Mutation p.S1096F 0.31 deleterious(0) possibly_damaging(0.823) TCGA-FS-A1ZK-06 12 21457412 21457412 T C SLCO1A2 Missense_Mutation p.I180V 0.36 tolerated(0.12) benign(0.086) TCGA-FS-A1ZK-06 12 21699379 21699379 G A GYS2 Missense_Mutation p.S483F 0.38 deleterious(0) possibly_damaging(0.879) TCGA-FS-A1ZK-06 12 21733318 21733318 A C GYS2 Silent p.A87A 0.41 TCGA-FS-A1ZK-06 12 22623806 22623806 G A C2CD5 Nonsense_Mutation p.Q800* 0.51 TCGA-FS-A1ZK-06 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.96 deleterious(0) benign(0.361) TCGA-FS-A1ZK-06 12 2936809 2936809 C T NRIP2 Silent p.Q245Q 0.37 TCGA-FS-A1ZK-06 12 30873742 30873742 T C CAPRIN2 Intron 0.27 TCGA-FS-A1ZK-06 12 40041606 40041606 G A C12orf40 Missense_Mutation p.D133N 0.22 tolerated(0.31) benign(0.014) TCGA-FS-A1ZK-06 12 40677810 40677810 G A LRRK2 Missense_Mutation p.R792K 0.31 tolerated(1) benign(0.001) TCGA-FS-A1ZK-06 12 42853643 42853643 C T PRICKLE1 Missense_Mutation p.G822R 0.16 tolerated(0.43) possibly_damaging(0.851) TCGA-FS-A1ZK-06 12 42853644 42853644 C T PRICKLE1 Silent p.K821K 0.16 TCGA-FS-A1ZK-06 12 43858432 43858432 G A ADAMTS20 Missense_Mutation p.L491F 0.27 tolerated(0.13) probably_damaging(1) TCGA-FS-A1ZK-06 12 44238710 44238710 C T TMEM117 Silent p.L86L 0.31 TCGA-FS-A1ZK-06 12 45410236 45410236 G T DBX2 Missense_Mutation p.Q285K 0.25 tolerated(0.17) benign(0.114) TCGA-FS-A1ZK-06 12 48191223 48191223 G A HDAC7 Missense_Mutation p.P174L 0.29 deleterious(0.03) benign(0.011) TCGA-FS-A1ZK-06 12 48367243 48367243 C T COL2A1 Missense_Mutation p.G1471R 0.29 unknown(0) TCGA-FS-A1ZK-06 12 48380960 48380960 C T COL2A1 Splice_Site p.X423_splice 0.29 TCGA-FS-A1ZK-06 12 49162479 49162479 C T ADCY6 Silent p.Q1134Q 0.31 TCGA-FS-A1ZK-06 12 49177038 49177038 G A ADCY6 Silent p.P60P 0.26 TCGA-FS-A1ZK-06 12 49435896 49435896 G A KMT2D Missense_Mutation p.P2029S 0.14 probably_damaging(0.998) TCGA-FS-A1ZK-06 12 49951630 49951630 G A KCNH3 Missense_Mutation p.G1049E 0.21 deleterious_low_confidence(0.02) benign(0.002) TCGA-FS-A1ZK-06 12 49958267 49958267 G A MCRS1 Missense_Mutation p.S198F 0.40 deleterious(0) probably_damaging(0.985) TCGA-FS-A1ZK-06 12 51384698 51384698 A G SLC11A2 Silent p.L514L 0.29 TCGA-FS-A1ZK-06 12 51384701 51384701 G A SLC11A2 Silent p.V513V 0.32 TCGA-FS-A1ZK-06 12 51488874 51488874 G A TFCP2 3'UTR 0.16 TCGA-FS-A1ZK-06 12 5154975 5154975 G A KCNA5 Silent p.R554R 0.26 TCGA-FS-A1ZK-06 12 52284460 52284460 C T ANKRD33 Missense_Mutation p.R244W 0.25 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZK-06 12 52284803 52284803 C T ANKRD33 Missense_Mutation p.S358F 0.27 deleterious(0.02) benign(0.108) TCGA-FS-A1ZK-06 12 52641960 52641960 G A KRT7 Splice_Site p.X402_splice 0.20 TCGA-FS-A1ZK-06 12 52715036 52715036 G A KRT83 Silent p.S28S 0.19 TCGA-FS-A1ZK-06 12 52778905 52778905 G A KRT84 Silent p.D155D 0.15 TCGA-FS-A1ZK-06 12 52841607 52841607 A C KRT6B Missense_Mutation p.V460G 0.25 deleterious(0) probably_damaging(0.955) TCGA-FS-A1ZK-06 12 52864331 52864331 C T KRT6C Missense_Mutation p.M387I 0.23 tolerated(0.05) benign(0.085) TCGA-FS-A1ZK-06 12 52940286 52940286 G A KRT71 Missense_Mutation p.S370F 0.28 deleterious(0) possibly_damaging(0.908) TCGA-FS-A1ZK-06 12 53084916 53084916 G A KRT77 3'UTR 0.15 TCGA-FS-A1ZK-06 12 53084917 53084917 G A KRT77 3'UTR 0.15 TCGA-FS-A1ZK-06 12 53217696 53217696 C T KRT79 Missense_Mutation p.G374E 0.39 deleterious(0.01) possibly_damaging(0.501) TCGA-FS-A1ZK-06 12 53291216 53291216 T A KRT8 Missense_Mutation p.K511M 0.27 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FS-A1ZK-06 12 53468952 53468952 G A SPRYD3 Missense_Mutation p.P100S 0.25 tolerated(0.09) probably_damaging(0.999) TCGA-FS-A1ZK-06 12 54107577 54107577 G A CALCOCO1 Missense_Mutation p.P567S 0.36 deleterious(0.04) benign(0.278) TCGA-FS-A1ZK-06 12 54404894 54404894 G A HOXC8 Missense_Mutation p.R153Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZK-06 12 54917708 54917708 C T NCKAP1L Silent p.Y708Y 0.35 TCGA-FS-A1ZK-06 12 55759263 55759263 C T OR6C75 Silent p.A123A 0.29 TCGA-FS-A1ZK-06 12 55820729 55820729 G A OR6C76 Missense_Mutation p.R231K 0.39 tolerated_low_confidence(0.12) benign(0.308) TCGA-FS-A1ZK-06 12 56380879 56380879 C T RAB5B Silent p.F45F 0.35 TCGA-FS-A1ZK-06 12 56397697 56397697 C T SUOX Missense_Mutation p.P175L 0.28 deleterious(0) benign(0.195) TCGA-FS-A1ZK-06 12 56600195 56600195 G A RNF41 3'UTR 0.27 TCGA-FS-A1ZK-06 12 56604349 56604349 G A RNF41 Missense_Mutation p.P32S 0.31 tolerated(0.28) probably_damaging(0.998) TCGA-FS-A1ZK-06 12 56625132 56625132 C T SLC39A5 Missense_Mutation p.S25L 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 12 57663588 57663588 G A R3HDM2 Missense_Mutation p.P498S 0.30 deleterious(0.04) benign(0.003) TCGA-FS-A1ZK-06 12 57677620 57677620 C T R3HDM2 Silent p.R372R 0.34 TCGA-FS-A1ZK-06 12 57861832 57861832 C T GLI1 Missense_Mutation p.S378L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZK-06 12 58004395 58004395 G A ARHGEF25 Missense_Mutation p.E48K 0.23 tolerated_low_confidence(0.06) benign(0.066) TCGA-FS-A1ZK-06 12 58113946 58113946 G A OS9 Silent p.Q555Q 0.39 TCGA-FS-A1ZK-06 12 58158686 58158686 C T CYP27B1 Missense_Mutation p.E272K 0.26 tolerated(0.79) benign(0.01) TCGA-FS-A1ZK-06 12 64815032 64815032 C T XPOT Silent p.F287F 0.29 TCGA-FS-A1ZK-06 12 68043584 68043584 T A DYRK2 Silent p.G19G 0.27 TCGA-FS-A1ZK-06 12 69756643 69756643 C T YEATS4 Missense_Mutation p.H43Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 12 70946726 70946726 G A PTPRB Missense_Mutation p.R1740W 0.31 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZK-06 12 70953240 70953240 C T PTPRB Missense_Mutation p.E1533K 0.26 tolerated(0.86) benign(0.005) TCGA-FS-A1ZK-06 12 71519129 71519129 C T TSPAN8 Silent p.Q233Q 0.28 TCGA-FS-A1ZK-06 12 71519134 71519134 A C TSPAN8 Missense_Mutation p.C232G 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-FS-A1ZK-06 12 7242783 7242783 T C C1R Missense_Mutation p.N97S 0.27 tolerated(0.09) benign(0.17) TCGA-FS-A1ZK-06 12 72956740 72956740 A T TRHDE Missense_Mutation p.E609D 0.20 tolerated(0.78) benign(0) TCGA-FS-A1ZK-06 12 7637816 7637816 G A CD163 Silent p.S885S 0.36 TCGA-FS-A1ZK-06 12 7653749 7653749 C T CD163 Missense_Mutation p.G148E 0.36 deleterious(0.04) probably_damaging(0.983) TCGA-FS-A1ZK-06 12 78513382 78513382 C T NAV3 Missense_Mutation p.R1136C 0.20 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZK-06 12 78516075 78516075 C T NAV3 Missense_Mutation p.L1369F 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 12 78604241 78604241 G A NAV3 Missense_Mutation p.E2346K 0.17 deleterious(0) benign(0.05) TCGA-FS-A1ZK-06 12 81239577 81239577 G A LIN7A Missense_Mutation p.P139S 0.33 deleterious(0.03) probably_damaging(0.96) TCGA-FS-A1ZK-06 12 81536964 81536964 C T ACSS3 Missense_Mutation p.P287S 0.29 tolerated(0.21) benign(0.078) TCGA-FS-A1ZK-06 12 85255683 85255683 G A SLC6A15 Missense_Mutation p.R641C 0.22 tolerated(0.2) benign(0) TCGA-FS-A1ZK-06 12 85450849 85450849 C T LRRIQ1 Nonsense_Mutation p.Q760* 0.28 TCGA-FS-A1ZK-06 12 90010769 90010769 G A ATP2B1 Missense_Mutation p.P626L 0.24 tolerated(0.07) possibly_damaging(0.65) TCGA-FS-A1ZK-06 12 91445201 91445201 C T KERA Silent p.L327L 0.32 TCGA-FS-A1ZK-06 12 93968784 93968784 C T SOCS2 Silent p.A142A 0.25 TCGA-FS-A1ZK-06 12 93968785 93968785 C T SOCS2 Missense_Mutation p.P143S 0.24 tolerated(0.14) benign(0.104) TCGA-FS-A1ZK-06 12 95604835 95604835 G A FGD6 Silent p.I75I 0.27 TCGA-FS-A1ZK-06 12 97073463 97073463 C T C12orf55 Silent p.S1883S 0.34 TCGA-FS-A1ZK-06 12 97073495 97073495 G A C12orf55 Missense_Mutation p.R1894K 0.26 tolerated(0.06) benign(0.006) TCGA-FS-A1ZK-06 12 97078989 97078989 G A C12orf55 Missense_Mutation p.G1996E 0.28 deleterious(0.02) benign(0) TCGA-FS-A1ZK-06 12 978349 978349 C T WNK1 Intron 0.35 TCGA-FS-A1ZK-06 12 99060005 99060005 T C APAF1 Missense_Mutation p.V411A 0.23 deleterious(0.02) benign(0.164) TCGA-FS-A1ZK-06 12 994852 994852 C T WNK1 Missense_Mutation p.P1628S 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-FS-A1ZK-06 12 994853 994853 C T WNK1 Missense_Mutation p.P1628L 0.30 tolerated(0.09) benign(0.082) TCGA-FS-A1ZK-06 13 101890118 101890118 G A NALCN Silent p.F474F 0.42 TCGA-FS-A1ZK-06 13 109707909 109707909 C T MYO16 Missense_Mutation p.P1079S 0.39 tolerated(0.4) probably_damaging(1) TCGA-FS-A1ZK-06 13 111857668 111857668 G A ARHGEF7 Silent p.Q116Q 0.41 TCGA-FS-A1ZK-06 13 113208409 113208409 G A TUBGCP3 Nonsense_Mutation p.Q310* 0.32 TCGA-FS-A1ZK-06 13 26151272 26151272 G A ATP8A2 Missense_Mutation p.G593E 0.37 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZK-06 13 29012445 29012445 G A FLT1 Silent p.I142I 0.26 TCGA-FS-A1ZK-06 13 37679096 37679096 G A CSNK1A1L Missense_Mutation p.L100F 0.36 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FS-A1ZK-06 13 38320211 38320211 C T TRPC4 Missense_Mutation p.D254N 0.36 tolerated(0.14) benign(0.315) TCGA-FS-A1ZK-06 13 39425898 39425898 G C FREM2 Missense_Mutation p.R2273T 0.55 tolerated(0.12) benign(0.014) TCGA-FS-A1ZK-06 13 44463057 44463057 C T LACC1 Missense_Mutation p.P358S 0.33 deleterious(0.03) possibly_damaging(0.833) TCGA-FS-A1ZK-06 13 46287346 46287346 C T SPERT Silent p.L62L 0.58 TCGA-FS-A1ZK-06 13 46544079 46544079 A G ZC3H13 Missense_Mutation p.V867A 0.38 unknown(0) TCGA-FS-A1ZK-06 13 47408911 47408911 T C HTR2A 3'UTR 0.21 TCGA-FS-A1ZK-06 13 53217246 53217246 G A HNRNPA1L2 Missense_Mutation p.G207R 0.38 tolerated(0.12) unknown(0) TCGA-FS-A1ZK-06 13 58207511 58207511 A G PCDH17 Silent p.E277E 0.36 TCGA-FS-A1ZK-06 13 66878807 66878807 G T PCDH9 Missense_Mutation p.P1232T 0.33 tolerated(0.24) benign(0.011) TCGA-FS-A1ZK-06 13 76415295 76415295 C T LMO7 Silent p.A978A 0.36 TCGA-FS-A1ZK-06 13 77817289 77817289 G A MYCBP2 Missense_Mutation p.P807L 0.40 benign(0.187) TCGA-FS-A1ZK-06 13 88328746 88328746 C T SLITRK5 Missense_Mutation p.S368F 0.63 deleterious(0.01) probably_damaging(0.921) TCGA-FS-A1ZK-06 13 99575589 99575589 G A DOCK9 Silent p.V151V 0.32 TCGA-FS-A1ZK-06 14 101453403 101453403 G A SNORD114-26 RNA 0.43 TCGA-FS-A1ZK-06 14 103433413 103433413 C T CDC42BPB Nonsense_Mutation p.W814* 0.49 TCGA-FS-A1ZK-06 14 105174858 105174858 C T INF2 Silent p.S607S 0.50 TCGA-FS-A1ZK-06 14 105420984 105420984 C T AHNAK2 Silent p.K268K 0.40 TCGA-FS-A1ZK-06 14 105685585 105685585 G A BRF1 Intron 0.50 TCGA-FS-A1ZK-06 14 106406010 106406010 C T IGHV6-1 Nonsense_Mutation p.W16* 0.46 TCGA-FS-A1ZK-06 14 107083655 107083655 C T IGHV4-59 Missense_Mutation p.V11M 0.32 tolerated_low_confidence(0.15) possibly_damaging(0.579) TCGA-FS-A1ZK-06 14 107114022 107114022 C T IGHV3-64 Missense_Mutation p.V25M 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.648) TCGA-FS-A1ZK-06 14 107178876 107178876 G A IGHV2-70 Missense_Mutation p.L101F 0.46 deleterious(0.03) possibly_damaging(0.849) TCGA-FS-A1ZK-06 14 19574210 19574210 G A POTEG Missense_Mutation p.G423R 0.17 tolerated(0.26) benign(0.022) TCGA-FS-A1ZK-06 14 19574211 19574211 G A POTEG Missense_Mutation p.G423E 0.17 tolerated(0.12) benign(0.008) TCGA-FS-A1ZK-06 14 19988215 19988215 G A POTEM 3'UTR 0.48 TCGA-FS-A1ZK-06 14 20612129 20612129 C T OR4N5 Missense_Mutation p.P79S 0.44 deleterious(0) benign(0.244) TCGA-FS-A1ZK-06 14 22616359 22616359 G C TRAV27 Missense_Mutation p.G34R 0.48 deleterious(0.02) probably_damaging(0.939) TCGA-FS-A1ZK-06 14 24590046 24590046 G A DCAF11 Splice_Site p.X365_splice 0.41 TCGA-FS-A1ZK-06 14 24677370 24677370 G A TSSK4 3'UTR 0.46 TCGA-FS-A1ZK-06 14 24728447 24728447 G A TGM1 Silent p.S331S 0.40 TCGA-FS-A1ZK-06 14 24808511 24808511 C T RIPK3 Missense_Mutation p.V61I 0.45 deleterious(0.02) probably_damaging(0.923) TCGA-FS-A1ZK-06 14 31144256 31144256 T G SCFD1 Silent p.V409V 0.47 TCGA-FS-A1ZK-06 14 33147646 33147646 C T AKAP6 Missense_Mutation p.H954Y 0.37 deleterious(0.01) benign(0.444) TCGA-FS-A1ZK-06 14 35482571 35482571 A T SRP54 Missense_Mutation p.Y219F 0.42 tolerated(1) benign(0.018) TCGA-FS-A1ZK-06 14 36982375 36982375 C T SFTA3 5'UTR 0.38 TCGA-FS-A1ZK-06 14 44974376 44974376 C T FSCB Silent p.E605E 0.46 TCGA-FS-A1ZK-06 14 45669241 45669241 A G FANCM 3'UTR 0.60 TCGA-FS-A1ZK-06 14 53539314 53539314 C T DDHD1 Splice_Site p.X501_splice 0.37 TCGA-FS-A1ZK-06 14 53558541 53558541 C T DDHD1 Silent p.Q417Q 0.39 TCGA-FS-A1ZK-06 14 57099831 57099831 C T TMEM260 Missense_Mutation p.P556S 0.33 deleterious(0.01) benign(0.371) TCGA-FS-A1ZK-06 14 57099832 57099832 C T TMEM260 Missense_Mutation p.P556L 0.33 tolerated(0.08) benign(0.297) TCGA-FS-A1ZK-06 14 57270960 57270960 G A OTX2 Silent p.I73I 0.36 TCGA-FS-A1ZK-06 14 60977972 60977972 T C SIX6 3'UTR 0.47 TCGA-FS-A1ZK-06 14 62536400 62536400 C T SYT16 Silent p.S201S 0.42 TCGA-FS-A1ZK-06 14 64519208 64519208 C T SYNE2 Silent p.P2859P 0.43 TCGA-FS-A1ZK-06 14 64896942 64896942 G A MTHFD1 Missense_Mutation p.M435I 0.47 deleterious(0) possibly_damaging(0.511) TCGA-FS-A1ZK-06 14 68044831 68044831 T C PLEKHH1 Missense_Mutation p.V889A 0.40 tolerated(0.21) benign(0.002) TCGA-FS-A1ZK-06 14 69341640 69341640 G A ACTN1 Missense_Mutation p.S894F 0.45 deleterious(0) benign(0.248) TCGA-FS-A1ZK-06 14 69800304 69800304 G A GALNT16 Silent p.G318G 0.45 TCGA-FS-A1ZK-06 14 70170167 70170167 C T KIAA0247 Silent p.P59P 0.41 TCGA-FS-A1ZK-06 14 72176192 72176192 C T SIPA1L1 Missense_Mutation p.P1361L 0.38 deleterious(0.01) benign(0.156) TCGA-FS-A1ZK-06 14 73420935 73420935 C T DCAF4 Missense_Mutation p.S291F 0.40 tolerated(0.49) benign(0.365) TCGA-FS-A1ZK-06 14 74062021 74062021 C T ACOT4 Missense_Mutation p.P310L 0.34 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 14 74125555 74125555 G A DNAL1 Silent p.E16E 0.38 TCGA-FS-A1ZK-06 14 75136688 75136688 A T AREL1 Missense_Mutation p.F584I 0.41 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZK-06 14 76012946 76012946 C T BATF Missense_Mutation p.P104S 0.36 tolerated(0.21) benign(0.056) TCGA-FS-A1ZK-06 14 76107327 76107327 G A FLVCR2 Missense_Mutation p.G422E 0.41 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 14 80668601 80668601 C T DIO2 3'Flank 0.48 TCGA-FS-A1ZK-06 14 81744729 81744729 C T STON2 Nonsense_Mutation p.W309* 0.42 TCGA-FS-A1ZK-06 14 81837529 81837529 G A STON2 Missense_Mutation p.A125V 0.35 deleterious_low_confidence(0.04) benign(0.005) TCGA-FS-A1ZK-06 14 86088580 86088580 C T FLRT2 Missense_Mutation p.S241L 0.46 deleterious(0) possibly_damaging(0.464) TCGA-FS-A1ZK-06 14 86089130 86089130 G A FLRT2 Silent p.R424R 0.35 TCGA-FS-A1ZK-06 14 89131692 89131692 C T EML5 Missense_Mutation p.R1089Q 0.37 deleterious(0.04) benign(0.038) TCGA-FS-A1ZK-06 14 89307837 89307837 C T TTC8 Silent p.S186S 0.32 TCGA-FS-A1ZK-06 14 91007723 91007723 G A TTC7B Missense_Mutation p.R841C 0.40 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 14 92076893 92076893 G A CATSPERB Silent p.I843I 0.40 TCGA-FS-A1ZK-06 14 94063734 94063734 C T UNC79 Silent p.L897L 0.31 TCGA-FS-A1ZK-06 14 95081190 95081190 G A SERPINA3 Missense_Mutation p.G138R 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-FS-A1ZK-06 14 95570308 95570308 G A DICER1 Missense_Mutation p.S1142F 0.39 tolerated_low_confidence(0.43) benign(0.012) TCGA-FS-A1ZK-06 14 96707723 96707723 A C BDKRB2 Missense_Mutation p.K353T 0.23 tolerated(0.05) benign(0.118) TCGA-FS-A1ZK-06 15 23811821 23811821 G A MKRN3 Missense_Mutation p.E298K 0.16 deleterious(0) possibly_damaging(0.727) TCGA-FS-A1ZK-06 15 25442625 25442625 C T SNORD115-14 3'Flank 0.52 TCGA-FS-A1ZK-06 15 25463749 25463749 G A SNORD115-27 5'Flank 0.70 TCGA-FS-A1ZK-06 15 31819489 31819489 C T OTUD7A Silent p.R225R 0.30 TCGA-FS-A1ZK-06 15 34356426 34356426 G A CHRM5 Missense_Mutation p.R503K 0.74 deleterious(0.01) possibly_damaging(0.472) TCGA-FS-A1ZK-06 15 39885722 39885722 G A THBS1 Nonsense_Mutation p.W1040* 0.42 TCGA-FS-A1ZK-06 15 42276730 42276730 C T PLA2G4E Missense_Mutation p.E764K 0.38 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 15 43574782 43574782 C T TGM7 Silent p.R347R 0.64 TCGA-FS-A1ZK-06 15 43893725 43893725 G A STRC Missense_Mutation p.R1524C 0.44 deleterious(0) possibly_damaging(0.885) TCGA-FS-A1ZK-06 15 43990946 43990946 C T CKMT1A Silent p.D373D 0.44 TCGA-FS-A1ZK-06 15 45394107 45394107 C T DUOX2 Missense_Mutation p.G912E 0.43 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 15 48748863 48748863 A C FBN1 Missense_Mutation p.F1798C 0.36 probably_damaging(0.935) TCGA-FS-A1ZK-06 15 51040393 51040393 G A SPPL2A Missense_Mutation p.P123S 0.40 deleterious(0.04) benign(0.113) TCGA-FS-A1ZK-06 15 51687066 51687066 G A GLDN Silent p.R192R 0.33 TCGA-FS-A1ZK-06 15 55921201 55921201 C T PRTG Silent p.G875G 0.38 TCGA-FS-A1ZK-06 15 59911093 59911093 C T GCNT3 Missense_Mutation p.P219L 0.43 tolerated(0.13) benign(0.033) TCGA-FS-A1ZK-06 15 62217696 62217696 T C VPS13C Missense_Mutation p.K2190E 0.33 deleterious(0.04) benign(0.002) TCGA-FS-A1ZK-06 15 62217698 62217698 C T VPS13C Missense_Mutation p.G2189E 0.30 tolerated(0.21) possibly_damaging(0.87) TCGA-FS-A1ZK-06 15 63893549 63893549 G A FBXL22 Silent p.G136G 0.41 TCGA-FS-A1ZK-06 15 65676382 65676382 C T IGDCC4 Missense_Mutation p.G1240S 0.29 tolerated_low_confidence(0.33) benign(0.004) TCGA-FS-A1ZK-06 15 65917849 65917849 C T SLC24A1 Silent p.F477F 0.50 TCGA-FS-A1ZK-06 15 69223036 69223036 C T SPESP1 Missense_Mutation p.S15L 0.45 tolerated(0.18) possibly_damaging(0.741) TCGA-FS-A1ZK-06 15 72039234 72039234 C T THSD4 Silent p.H698H 0.55 TCGA-FS-A1ZK-06 15 73832823 73832823 C T C15orf60 Intron 0.38 TCGA-FS-A1ZK-06 15 75310222 75310222 C T SCAMP5 Missense_Mutation p.S102F 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZK-06 15 75562480 75562480 C T GOLGA6C Silent p.P674P 0.19 TCGA-FS-A1ZK-06 15 78393523 78393523 G A SH2D7 Missense_Mutation p.E310K 0.36 tolerated(0.87) benign(0.031) TCGA-FS-A1ZK-06 15 81600992 81600992 C T IL16 Silent p.I1284I 0.40 TCGA-FS-A1ZK-06 15 83345327 83345327 C T AP3B2 Silent p.R517R 0.62 TCGA-FS-A1ZK-06 15 85400209 85400209 C T ALPK3 Missense_Mutation p.P949L 0.43 deleterious_low_confidence(0.03) benign(0.085) TCGA-FS-A1ZK-06 15 86807597 86807597 G A AGBL1 Missense_Mutation p.D353N 0.38 tolerated(0.19) benign(0.347) TCGA-FS-A1ZK-06 15 89398703 89398703 C T ACAN Silent p.L963L 0.37 TCGA-FS-A1ZK-06 15 90328675 90328675 G A ANPEP Silent p.L937L 0.36 TCGA-FS-A1ZK-06 15 90814640 90814640 G A NGRN Missense_Mutation p.G166S 0.38 tolerated(0.19) possibly_damaging(0.504) TCGA-FS-A1ZK-06 15 91043394 91043394 C T IQGAP1 3'UTR 0.56 TCGA-FS-A1ZK-06 15 91512731 91512731 G A PRC1 Silent p.P565P 0.38 TCGA-FS-A1ZK-06 15 91512732 91512732 G A PRC1 Missense_Mutation p.P565L 0.37 tolerated(0.11) benign(0.297) TCGA-FS-A1ZK-06 15 92459306 92459306 G A SLCO3A1 Silent p.G88G 0.41 TCGA-FS-A1ZK-06 16 115019 115019 C T RHBDF1 5'UTR 0.35 TCGA-FS-A1ZK-06 16 12096892 12096892 C T SNX29 Silent p.S38S 0.40 TCGA-FS-A1ZK-06 16 1291250 1291250 C T TPSAB1 Missense_Mutation p.P53L 0.43 tolerated(0.29) benign(0.006) TCGA-FS-A1ZK-06 16 14345761 14345761 C T MKL2 Nonsense_Mutation p.Q766* 0.40 TCGA-FS-A1ZK-06 16 20702372 20702372 C T ACSM1 Missense_Mutation p.E47K 0.37 tolerated(0.24) benign(0.012) TCGA-FS-A1ZK-06 16 20975684 20975684 G A DNAH3 Silent p.T3174T 0.38 TCGA-FS-A1ZK-06 16 21071604 21071604 C T DNAH3 Missense_Mutation p.G1265E 0.38 deleterious(0) possibly_damaging(0.876) TCGA-FS-A1ZK-06 16 21272580 21272580 G A CRYM Missense_Mutation p.S292F 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 16 2131601 2131601 A G TSC2 Missense_Mutation p.T1206A 0.33 tolerated(0.11) probably_damaging(0.997) TCGA-FS-A1ZK-06 16 2263819 2263819 A C PGP Missense_Mutation p.N292K 0.21 tolerated(0.22) benign(0.243) TCGA-FS-A1ZK-06 16 2284186 2284186 G C E4F1 Missense_Mutation p.A464P 0.33 tolerated(0.11) benign(0.004) TCGA-FS-A1ZK-06 16 23203737 23203737 A C SCNN1G Missense_Mutation p.E228A 0.42 deleterious(0) possibly_damaging(0.79) TCGA-FS-A1ZK-06 16 24104231 24104231 T C PRKCB Missense_Mutation p.C217R 0.42 tolerated(0.25) benign(0.098) TCGA-FS-A1ZK-06 16 2578376 2578376 C T AMDHD2 Missense_Mutation p.P286L 0.43 deleterious(0.02) probably_damaging(0.991) TCGA-FS-A1ZK-06 16 27472667 27472667 G A GTF3C1 3'UTR 0.25 TCGA-FS-A1ZK-06 16 27475829 27475829 G A GTF3C1 Missense_Mutation p.P1895L 0.29 tolerated(0.29) benign(0.005) TCGA-FS-A1ZK-06 16 27475830 27475830 G A GTF3C1 Missense_Mutation p.P1895S 0.30 tolerated(0.48) benign(0.005) TCGA-FS-A1ZK-06 16 27476005 27476005 G A GTF3C1 Silent p.P1836P 0.23 TCGA-FS-A1ZK-06 16 27476006 27476006 G A GTF3C1 Missense_Mutation p.P1836L 0.24 tolerated(0.13) benign(0.001) TCGA-FS-A1ZK-06 16 27481569 27481569 G A GTF3C1 Silent p.A1558A 0.26 TCGA-FS-A1ZK-06 16 2749829 2749829 T G KCTD5 Missense_Mutation p.V154G 0.48 tolerated(0.32) benign(0.203) TCGA-FS-A1ZK-06 16 27720122 27720122 A C KIAA0556 Missense_Mutation p.T496P 0.22 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZK-06 16 2817499 2817499 C T SRRM2 Missense_Mutation p.P2324S 0.44 probably_damaging(0.998) TCGA-FS-A1ZK-06 16 30035634 30035634 C T C16orf92 3'UTR 0.44 TCGA-FS-A1ZK-06 16 30102231 30102231 G A TBX6 Silent p.P67P 0.37 TCGA-FS-A1ZK-06 16 30410152 30410152 C T ZNF48 Silent p.A527A 0.46 TCGA-FS-A1ZK-06 16 30410153 30410153 C T ZNF48 Missense_Mutation p.P528S 0.46 tolerated(0.24) benign(0.001) TCGA-FS-A1ZK-06 16 30516721 30516721 G A ITGAL Silent p.E768E 0.34 TCGA-FS-A1ZK-06 16 30516772 30516772 C T ITGAL Silent p.F785F 0.30 TCGA-FS-A1ZK-06 16 30777704 30777704 C T RNF40 Missense_Mutation p.A373V 0.45 deleterious(0.01) benign(0.115) TCGA-FS-A1ZK-06 16 31373954 31373954 C T ITGAX Silent p.L413L 0.27 TCGA-FS-A1ZK-06 16 3140185 3140185 G A ZSCAN10 Missense_Mutation p.S362L 0.33 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 16 3166463 3166463 C T ZNF205 Silent p.L133L 0.42 TCGA-FS-A1ZK-06 16 360064 360064 C T AXIN1 Missense_Mutation p.G342E 0.62 deleterious(0) possibly_damaging(0.659) TCGA-FS-A1ZK-06 16 3705913 3705913 G A DNASE1 Missense_Mutation p.G71R 0.47 tolerated(0.28) probably_damaging(0.995) TCGA-FS-A1ZK-06 16 3777962 3777962 G A CREBBP Silent p.S2362S 0.39 TCGA-FS-A1ZK-06 16 47001558 47001558 G A DNAJA2 Silent p.G148G 0.51 TCGA-FS-A1ZK-06 16 4701967 4701967 C T MGRN1 Missense_Mutation p.P71S 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZK-06 16 4731613 4731613 C T MGRN1 Silent p.L398L 0.45 TCGA-FS-A1ZK-06 16 4926972 4926972 C T UBN1 Missense_Mutation p.S1042F 0.34 tolerated(0.06) possibly_damaging(0.629) TCGA-FS-A1ZK-06 16 4941922 4941922 T G PPL Missense_Mutation p.S620R 0.40 tolerated(0.05) benign(0.049) TCGA-FS-A1ZK-06 16 50339720 50339720 C T ADCY7 Missense_Mutation p.T571I 0.38 tolerated(0.4) benign(0.149) TCGA-FS-A1ZK-06 16 50339721 50339721 C T ADCY7 Silent p.T571T 0.38 TCGA-FS-A1ZK-06 16 55880270 55880270 C T CES5A 3'UTR 0.88 TCGA-FS-A1ZK-06 16 55886881 55886881 G A CES5A Silent p.S424S 0.44 TCGA-FS-A1ZK-06 16 56973251 56973251 A T HERPUD1 Silent p.A178A 0.29 TCGA-FS-A1ZK-06 16 57719662 57719662 G A GPR97 Nonsense_Mutation p.W455* 0.35 TCGA-FS-A1ZK-06 16 58078993 58078993 C T MMP15 Silent p.S551S 0.26 TCGA-FS-A1ZK-06 16 66844305 66844305 G A NAE1 Silent p.S374S 0.34 TCGA-FS-A1ZK-06 16 66918222 66918222 C T PDP2 Missense_Mutation p.S12F 0.17 tolerated_low_confidence(0.07) benign(0.02) TCGA-FS-A1ZK-06 16 66948315 66948315 C T CDH16 Missense_Mutation p.G195E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 16 67281298 67281298 C T FHOD1 Missense_Mutation p.D6N 0.33 tolerated_low_confidence(0.07) benign(0.075) TCGA-FS-A1ZK-06 16 67322240 67322240 C T PLEKHG4 Missense_Mutation p.P1131S 0.29 tolerated(0.39) benign(0.006) TCGA-FS-A1ZK-06 16 67578895 67578895 C T FAM65A Missense_Mutation p.T989I 0.24 tolerated(0.09) possibly_damaging(0.507) TCGA-FS-A1ZK-06 16 68847364 68847364 C T CDH1 Missense_Mutation p.P429L 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-FS-A1ZK-06 16 69143862 69143862 G A HAS3 Silent p.Q188Q 0.33 TCGA-FS-A1ZK-06 16 69334793 69334793 C T SNTB2 Missense_Mutation p.S530L 0.29 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 16 70286801 70286801 G A AARS Silent p.A910A 0.30 TCGA-FS-A1ZK-06 16 70998635 70998635 C T HYDIN Silent p.E1928E 0.29 TCGA-FS-A1ZK-06 16 71701153 71701153 G A PHLPP2 Missense_Mutation p.P571L 0.32 tolerated(0.62) probably_damaging(0.953) TCGA-FS-A1ZK-06 16 71736601 71736601 G A PHLPP2 Silent p.I106I 0.31 TCGA-FS-A1ZK-06 16 71895750 71895750 G A ZNF821 Silent p.I171I 0.31 TCGA-FS-A1ZK-06 16 72170368 72170368 C T PMFBP1 Silent p.K394K 0.25 TCGA-FS-A1ZK-06 16 74752957 74752957 G A FA2H Missense_Mutation p.H239Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 16 74752958 74752958 G C FA2H Missense_Mutation p.F238L 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-FS-A1ZK-06 16 76592592 76592592 G A CNTNAP4 3'Flank 0.33 TCGA-FS-A1ZK-06 16 78005799 78005799 T A VAT1L Missense_Mutation p.I377N 0.30 deleterious(0) possibly_damaging(0.819) TCGA-FS-A1ZK-06 16 80638135 80638135 G A CDYL2 3'UTR 0.33 TCGA-FS-A1ZK-06 16 81293407 81293407 C T BCMO1 Missense_Mutation p.S107F 0.26 tolerated(0.1) benign(0.049) TCGA-FS-A1ZK-06 16 81410821 81410821 C T GAN Intron 0.37 TCGA-FS-A1ZK-06 16 82033037 82033037 G A SDR42E1 Silent p.V287V 0.30 TCGA-FS-A1ZK-06 16 83711929 83711929 T G CDH13 Silent p.T514T 0.22 TCGA-FS-A1ZK-06 16 84063101 84063101 G A SLC38A8 Nonsense_Mutation p.Q230* 0.18 TCGA-FS-A1ZK-06 16 84227702 84227702 G A ADAD2 Missense_Mutation p.R170K 0.37 tolerated_low_confidence(0.71) benign(0.031) TCGA-FS-A1ZK-06 16 85111229 85111229 G A KIAA0513 Missense_Mutation p.R258K 0.27 tolerated(1) benign(0.001) TCGA-FS-A1ZK-06 16 85694852 85694852 C G GSE1 Missense_Mutation p.P581A 0.34 deleterious(0.05) possibly_damaging(0.638) TCGA-FS-A1ZK-06 16 85694854 85694854 C T GSE1 Silent p.P581P 0.32 TCGA-FS-A1ZK-06 16 88719738 88719738 G A MVD Silent p.P364P 0.38 TCGA-FS-A1ZK-06 16 88876248 88876248 C T APRT Missense_Mutation p.G134E 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 16 88876249 88876249 C T APRT Splice_Site p.X134_splice 0.23 TCGA-FS-A1ZK-06 16 89351405 89351405 G A ANKRD11 Silent p.F515F 0.30 TCGA-FS-A1ZK-06 16 89805772 89805772 C T ZNF276 3'Flank 0.32 TCGA-FS-A1ZK-06 16 89922062 89922062 G A SPIRE2 Missense_Mutation p.D316N 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 16 90142339 90142339 G A PRDM7 5'Flank 0.30 TCGA-FS-A1ZK-06 16 9858655 9858655 C T GRIN2A Missense_Mutation p.D916N 0.38 tolerated(1) benign(0.003) TCGA-FS-A1ZK-06 17 10300303 10300303 C T MYH8 Silent p.K1393K 0.30 TCGA-FS-A1ZK-06 17 10309500 10309500 G A MYH8 Intron 0.45 TCGA-FS-A1ZK-06 17 10355446 10355446 C T MYH4 Missense_Mutation p.E1184K 0.44 deleterious(0.03) benign(0.118) TCGA-FS-A1ZK-06 17 10541482 10541482 C T MYH3 Missense_Mutation p.E1203K 0.41 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZK-06 17 11593583 11593583 C T DNAH9 Silent p.L1482L 0.41 TCGA-FS-A1ZK-06 17 12647617 12647617 C T MYOCD Missense_Mutation p.P279S 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 17 12656388 12656388 G A MYOCD Missense_Mutation p.E595K 0.41 tolerated(0.48) benign(0.234) TCGA-FS-A1ZK-06 17 15502015 15502015 G A CDRT1 Intron 0.46 TCGA-FS-A1ZK-06 17 15619996 15619996 C T ZNF286A Missense_Mutation p.H320Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZK-06 17 15878754 15878754 G A ADORA2B 3'UTR 0.44 TCGA-FS-A1ZK-06 17 15961014 15961014 G A NCOR1 Missense_Mutation p.S2069F 0.54 benign(0.125) TCGA-FS-A1ZK-06 17 16842840 16842840 C T TNFRSF13B 3'UTR 0.67 TCGA-FS-A1ZK-06 17 18220793 18220793 C T SMCR8 Missense_Mutation p.P564S 0.35 tolerated(0.74) benign(0) TCGA-FS-A1ZK-06 17 25753503 25753503 C T TBC1D3P5 RNA 0.69 TCGA-FS-A1ZK-06 17 26659002 26659002 C T IFT20 Missense_Mutation p.D30N 0.61 deleterious(0) possibly_damaging(0.888) TCGA-FS-A1ZK-06 17 26823500 26823500 C T SLC13A2 Silent p.V550V 0.28 TCGA-FS-A1ZK-06 17 27816697 27816697 C T TAOK1 Missense_Mutation p.P224L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZK-06 17 27958542 27958542 C T SSH2 Missense_Mutation p.G1197R 0.23 tolerated_low_confidence(0.57) benign(0.003) TCGA-FS-A1ZK-06 17 27959827 27959827 C A SSH2 Silent p.L768L 0.20 TCGA-FS-A1ZK-06 17 28380942 28380942 G A EFCAB5 Missense_Mutation p.G657E 0.64 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 17 2883636 2883636 C T RAP1GAP2 Missense_Mutation p.P218S 0.33 deleterious(0.01) possibly_damaging(0.895) TCGA-FS-A1ZK-06 17 3181450 3181450 G A OR3A2 Silent p.F260F 0.34 TCGA-FS-A1ZK-06 17 3182244 3182244 G A OR3A2 5'UTR 0.45 TCGA-FS-A1ZK-06 17 33348531 33348531 G A RFFL Silent p.T150T 0.50 TCGA-FS-A1ZK-06 17 3349846 3349846 C T SPATA22 Missense_Mutation p.R241K 0.35 deleterious(0) possibly_damaging(0.803) TCGA-FS-A1ZK-06 17 33772396 33772396 C T SLFN13 Missense_Mutation p.G102R 0.42 tolerated(0.08) benign(0.181) TCGA-FS-A1ZK-06 17 34324841 34324841 G A CCL15 Nonsense_Mutation p.Q102* 0.44 TCGA-FS-A1ZK-06 17 36486596 36486596 C T GPR179 Silent p.R952R 0.75 TCGA-FS-A1ZK-06 17 36487299 36487299 G A GPR179 Missense_Mutation p.S718F 0.71 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 17 36493589 36493589 C T GPR179 Silent p.E306E 0.68 TCGA-FS-A1ZK-06 17 36499518 36499518 G A GPR179 Missense_Mutation p.P52L 0.63 deleterious(0.02) probably_damaging(0.911) TCGA-FS-A1ZK-06 17 3772873 3772873 G C CAMKK1 Missense_Mutation p.L455V 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 17 3844779 3844779 C T ATP2A3 Missense_Mutation p.R572K 0.44 tolerated(1) benign(0.008) TCGA-FS-A1ZK-06 17 38546331 38546331 G A TOP2A Silent p.V1451V 0.43 TCGA-FS-A1ZK-06 17 38910165 38910165 G A KRT25 Nonsense_Mutation p.Q206* 0.59 TCGA-FS-A1ZK-06 17 3937384 3937384 C T ZZEF1 Missense_Mutation p.G2170E 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.674) TCGA-FS-A1ZK-06 17 3937385 3937385 C T ZZEF1 Missense_Mutation p.G2170R 0.40 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-FS-A1ZK-06 17 39504771 39504771 C T KRT33A Silent p.K184K 0.26 TCGA-FS-A1ZK-06 17 39580567 39580567 G A KRT37 Missense_Mutation p.P70L 0.29 deleterious(0.05) benign(0.037) TCGA-FS-A1ZK-06 17 40330388 40330388 C T KCNH4 Missense_Mutation p.G140R 0.69 deleterious(0.05) benign(0.039) TCGA-FS-A1ZK-06 17 40353753 40353753 G A STAT5B 3'UTR 0.30 TCGA-FS-A1ZK-06 17 41020661 41020661 G A AOC4P RNA 0.60 TCGA-FS-A1ZK-06 17 41143029 41143029 C T RUNDC1 Missense_Mutation p.P380S 0.55 deleterious(0.04) possibly_damaging(0.887) TCGA-FS-A1ZK-06 17 41341698 41341698 C T NBR1 Missense_Mutation p.P192S 0.28 tolerated(0.8) benign(0.001) TCGA-FS-A1ZK-06 17 41569586 41569586 G A DHX8 Silent p.V143V 0.49 TCGA-FS-A1ZK-06 17 41599556 41599556 C T DHX8 Silent p.I1135I 0.30 TCGA-FS-A1ZK-06 17 43171163 43171163 C T NMT1 Missense_Mutation p.R166C 0.32 deleterious(0.01) benign(0.206) TCGA-FS-A1ZK-06 17 43215092 43215092 C T ACBD4 Missense_Mutation p.S169F 0.28 deleterious_low_confidence(0) benign(0.011) TCGA-FS-A1ZK-06 17 4352556 4352556 G A SPNS3 Missense_Mutation p.G266E 0.37 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZK-06 17 44953631 44953631 G A WNT9B Silent p.R207R 0.34 TCGA-FS-A1ZK-06 17 46804343 46804343 G A HOXB13 Missense_Mutation p.P222S 0.59 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 17 4722875 4722875 C T PLD2 Silent p.F820F 0.45 TCGA-FS-A1ZK-06 17 48268227 48268227 A G COL1A1 Missense_Mutation p.L765P 0.71 probably_damaging(0.997) TCGA-FS-A1ZK-06 17 48626486 48626486 C T SPATA20 Missense_Mutation p.P200L 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 17 48683279 48683279 C T CACNA1G Silent p.F1439F 0.54 TCGA-FS-A1ZK-06 17 4995744 4995744 G A ZFP3 Silent p.G315G 0.45 TCGA-FS-A1ZK-06 17 50008441 50008441 C T CA10 Missense_Mutation p.G63E 0.16 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 17 5036747 5036747 C T USP6 Nonsense_Mutation p.R96* 0.33 TCGA-FS-A1ZK-06 17 53342916 53342916 C T HLF Missense_Mutation p.S24F 0.17 deleterious(0) possibly_damaging(0.832) TCGA-FS-A1ZK-06 17 5421208 5421208 C T NLRP1 Splice_Site p.X1306_splice 0.37 TCGA-FS-A1ZK-06 17 54450167 54450167 C T ANKFN1 Silent p.L257L 0.60 TCGA-FS-A1ZK-06 17 56386068 56386068 G A BZRAP1 Missense_Mutation p.P1522L 0.67 tolerated(0.93) benign(0.005) TCGA-FS-A1ZK-06 17 56388315 56388315 G A BZRAP1 Missense_Mutation p.S1114F 0.53 tolerated(0.27) benign(0.008) TCGA-FS-A1ZK-06 17 57290426 57290426 C T SMG8 Missense_Mutation p.P748S 0.69 deleterious(0.03) probably_damaging(0.927) TCGA-FS-A1ZK-06 17 57290427 57290427 C T SMG8 Missense_Mutation p.P748L 0.69 tolerated(0.06) possibly_damaging(0.867) TCGA-FS-A1ZK-06 17 57650525 57650525 C T DHX40 Silent p.L159L 0.64 TCGA-FS-A1ZK-06 17 60503710 60503710 C T METTL2A Missense_Mutation p.H85Y 0.16 deleterious(0) possibly_damaging(0.78) TCGA-FS-A1ZK-06 17 60749032 60749032 G A MRC2 Silent p.V380V 0.32 TCGA-FS-A1ZK-06 17 61466735 61466735 C T TANC2 Missense_Mutation p.P887S 0.44 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 17 61499273 61499273 C T TANC2 Missense_Mutation p.S1977F 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 17 62006516 62006516 G A CD79B 3'UTR 0.63 TCGA-FS-A1ZK-06 17 62019354 62019354 C T SCN4A Splice_Site p.X1430_splice 0.33 TCGA-FS-A1ZK-06 17 62290858 62290858 G A TEX2 Silent p.S240S 0.20 TCGA-FS-A1ZK-06 17 63898358 63898358 C T CEP112 Missense_Mutation p.R692Q 0.26 tolerated(0.09) possibly_damaging(0.866) TCGA-FS-A1ZK-06 17 65082989 65082989 G A HELZ Missense_Mutation p.P1817L 0.27 tolerated_low_confidence(0.05) unknown(0) TCGA-FS-A1ZK-06 17 66110660 66110660 T C LINC00674 RNA 0.30 TCGA-FS-A1ZK-06 17 66925360 66925360 A G ABCA8 Silent p.L319L 0.47 TCGA-FS-A1ZK-06 17 6979005 6979005 C T CLEC10A Intron 0.54 TCGA-FS-A1ZK-06 17 7132931 7132931 C T DVL2 Silent p.K241K 0.33 TCGA-FS-A1ZK-06 17 722783 722783 G A NXN Missense_Mutation p.S239L 0.54 deleterious(0.04) probably_damaging(0.916) TCGA-FS-A1ZK-06 17 72519658 72519658 C G CD300LB Intron 0.17 TCGA-FS-A1ZK-06 17 72875693 72875693 G A FADS6 Silent p.F249F 0.32 TCGA-FS-A1ZK-06 17 72959853 72959853 G A HID1 Silent p.P123P 0.39 TCGA-FS-A1ZK-06 17 73805988 73805988 C T UNK Silent p.Y84Y 0.62 TCGA-FS-A1ZK-06 17 73844682 73844682 G A WBP2 Silent p.F122F 0.33 TCGA-FS-A1ZK-06 17 73888544 73888544 T C TRIM65 Missense_Mutation p.K183R 0.68 tolerated(0.1) benign(0.13) TCGA-FS-A1ZK-06 17 73945587 73945587 G A ACOX1 Nonsense_Mutation p.R525* 0.16 TCGA-FS-A1ZK-06 17 74015056 74015056 C T EVPL Missense_Mutation p.R408Q 0.65 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 17 7460146 7460146 G A TNFSF12 Missense_Mutation p.S142N 0.53 tolerated_low_confidence(1) benign(0.001) TCGA-FS-A1ZK-06 17 76457737 76457737 C T DNAH17 Silent p.K3062K 0.36 TCGA-FS-A1ZK-06 17 76503785 76503785 C T DNAH17 Missense_Mutation p.E1443K 0.25 probably_damaging(0.988) TCGA-FS-A1ZK-06 17 7673712 7673712 C T DNAH2 Silent p.L1362L 0.50 TCGA-FS-A1ZK-06 17 77043683 77043683 G A C1QTNF1 Missense_Mutation p.G120E 0.61 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 17 77043684 77043684 G A C1QTNF1 Silent p.G120G 0.61 TCGA-FS-A1ZK-06 17 77705076 77705076 C T ENPP7 Nonsense_Mutation p.R59* 0.37 TCGA-FS-A1ZK-06 17 78055755 78055757 TGC CG CCDC40 Frame_Shift_Del p.A630Vfs*11 0.16 TCGA-FS-A1ZK-06 17 78120709 78120709 G A EIF4A3 Missense_Mutation p.L18F 0.26 tolerated_low_confidence(0.26) benign(0.08) TCGA-FS-A1ZK-06 17 79279528 79279528 G A LINC00482 RNA 0.83 TCGA-FS-A1ZK-06 17 79287651 79287651 G A TMEM105 Missense_Mutation p.P64S 0.62 deleterious_low_confidence(0.03) possibly_damaging(0.803) TCGA-FS-A1ZK-06 17 7983960 7983960 A C AC129492.6 3'UTR 0.44 TCGA-FS-A1ZK-06 17 8157260 8157260 C T PFAS Missense_Mutation p.S2F 0.44 deleterious(0) benign(0.002) TCGA-FS-A1ZK-06 17 8215344 8215344 G A ARHGEF15 5'UTR 0.36 TCGA-FS-A1ZK-06 17 8451692 8451692 A C MYH10 Missense_Mutation p.F366L 0.22 probably_damaging(0.99) TCGA-FS-A1ZK-06 17 8702206 8702206 G A MFSD6L Missense_Mutation p.A78V 0.45 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 17 9694459 9694459 C T DHRS7C Missense_Mutation p.G48E 0.38 deleterious(0.03) benign(0.17) TCGA-FS-A1ZK-06 18 21703897 21703897 C T TTC39C Missense_Mutation p.S429L 0.50 tolerated(0.32) benign(0.019) TCGA-FS-A1ZK-06 18 28598186 28598186 C T DSC3 Missense_Mutation p.E372K 0.22 deleterious(0.02) benign(0.403) TCGA-FS-A1ZK-06 18 28598187 28598187 C T DSC3 Silent p.V371V 0.26 TCGA-FS-A1ZK-06 18 28609528 28609528 G T DSC3 Missense_Mutation p.P141T 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 18 28719835 28719835 A C DSC1 Missense_Mutation p.D513E 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZK-06 18 29046600 29046600 C T DSG3 Missense_Mutation p.P507S 0.38 tolerated(0.06) possibly_damaging(0.662) TCGA-FS-A1ZK-06 18 29046601 29046601 C T DSG3 Missense_Mutation p.P507L 0.38 deleterious(0) possibly_damaging(0.747) TCGA-FS-A1ZK-06 18 29054213 29054213 G A DSG3 Missense_Mutation p.G744E 0.38 deleterious(0.04) benign(0.078) TCGA-FS-A1ZK-06 18 29055678 29055678 G A DSG3 Missense_Mutation p.E819K 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 18 29171781 29171781 G A TTR 5'UTR 0.58 TCGA-FS-A1ZK-06 18 30091802 30091802 T G WBP11P1 RNA 0.47 TCGA-FS-A1ZK-06 18 31325147 31325147 C T ASXL3 Missense_Mutation p.P1779S 0.56 benign(0.022) TCGA-FS-A1ZK-06 18 3141961 3141961 C T MYOM1 Silent p.E667E 0.29 TCGA-FS-A1ZK-06 18 32462040 32462040 G A DTNA Missense_Mutation p.E637K 0.40 deleterious_low_confidence(0.01) benign(0.058) TCGA-FS-A1ZK-06 18 34335241 34335241 G A FHOD3 Silent p.E1289E 0.44 TCGA-FS-A1ZK-06 18 43667373 43667373 G A ATP5A1 Silent p.S295S 0.62 TCGA-FS-A1ZK-06 18 44559838 44559838 C T TCEB3B Missense_Mutation p.E600K 0.39 tolerated(0.06) probably_damaging(0.936) TCGA-FS-A1ZK-06 18 44560015 44560015 G A TCEB3B Missense_Mutation p.P541S 0.52 deleterious(0) benign(0.175) TCGA-FS-A1ZK-06 18 44560546 44560546 G A TCEB3B Missense_Mutation p.L364F 0.47 tolerated(0.83) benign(0.095) TCGA-FS-A1ZK-06 18 47500984 47500984 G A MYO5B Missense_Mutation p.P353L 0.39 tolerated(0.15) benign(0.061) TCGA-FS-A1ZK-06 18 47813150 47813150 A G CXXC1 Missense_Mutation p.Y28H 0.33 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZK-06 18 52556515 52556515 C T RAB27B Silent p.T176T 0.45 TCGA-FS-A1ZK-06 18 55103457 55103457 C T ONECUT2 Missense_Mutation p.P170L 0.38 tolerated(0.16) benign(0.392) TCGA-FS-A1ZK-06 18 57103244 57103244 C T CCBE1 Missense_Mutation p.E373K 0.43 tolerated_low_confidence(0.21) benign(0.002) TCGA-FS-A1ZK-06 18 60384439 60384439 T G PHLPP1 Missense_Mutation p.V508G 0.31 deleterious(0) possibly_damaging(0.665) TCGA-FS-A1ZK-06 18 61323156 61323156 C T SERPINB3 Missense_Mutation p.G303E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 18 61323175 61323175 C T SERPINB3 Missense_Mutation p.D297N 0.48 tolerated(0.5) benign(0.008) TCGA-FS-A1ZK-06 18 61390710 61390710 G A SERPINB11 3'UTR 0.40 TCGA-FS-A1ZK-06 18 67406248 67406248 G A DOK6 Missense_Mutation p.G216E 0.40 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 18 70205894 70205894 G A CBLN2 Silent p.T157T 0.31 TCGA-FS-A1ZK-06 18 71815929 71815929 C T TIMM21 5'UTR 0.58 TCGA-FS-A1ZK-06 18 73139553 73139553 C T SMIM21 5'UTR 0.41 TCGA-FS-A1ZK-06 18 9533743 9533743 C A RALBP1 Silent p.S540S 0.33 TCGA-FS-A1ZK-06 18 9887778 9887778 C T TXNDC2 Silent p.I434I 0.18 TCGA-FS-A1ZK-06 19 10444150 10444150 G A RAVER1 Missense_Mutation p.P29S 0.45 deleterious_low_confidence(0.02) benign(0.022) TCGA-FS-A1ZK-06 19 10444151 10444151 G A RAVER1 Silent p.P28P 0.44 TCGA-FS-A1ZK-06 19 10823826 10823826 C T QTRT1 Silent p.I364I 0.38 TCGA-FS-A1ZK-06 19 1091854 1091854 C T POLR2E Silent p.Q95Q 0.44 TCGA-FS-A1ZK-06 19 12541577 12541577 G A ZNF443 Missense_Mutation p.T470I 0.45 tolerated(0.28) probably_damaging(1) TCGA-FS-A1ZK-06 19 12541578 12541578 T A ZNF443 Missense_Mutation p.T470S 0.45 tolerated(0.23) probably_damaging(0.993) TCGA-FS-A1ZK-06 19 13220601 13220601 G A TRMT1 Silent p.H386H 0.33 TCGA-FS-A1ZK-06 19 13443705 13443705 C T CACNA1A Silent p.G411G 0.35 TCGA-FS-A1ZK-06 19 13446673 13446673 G A CACNA1A Silent p.L343L 0.45 TCGA-FS-A1ZK-06 19 15512027 15512027 G A AKAP8L Silent p.F250F 0.50 TCGA-FS-A1ZK-06 19 15905792 15905792 C T OR10H5 Missense_Mutation p.P312S 0.50 tolerated(0.16) benign(0.009) TCGA-FS-A1ZK-06 19 16060708 16060708 G A OR10H4 Silent p.K297K 0.49 TCGA-FS-A1ZK-06 19 16613942 16613942 A C C19orf44 Missense_Mutation p.T276P 0.48 tolerated(0.15) benign(0.275) TCGA-FS-A1ZK-06 19 16875870 16875870 G A NWD1 Silent p.R759R 0.58 TCGA-FS-A1ZK-06 19 17881307 17881307 C T FCHO1 Missense_Mutation p.S137F 0.38 deleterious(0) possibly_damaging(0.871) TCGA-FS-A1ZK-06 19 19377355 19377355 G A TM6SF2 Missense_Mutation p.P290S 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 19 19822584 19822584 G A ZNF14 Silent p.P502P 0.40 TCGA-FS-A1ZK-06 19 20235900 20235900 G A CTC-260E6.2 RNA 0.75 TCGA-FS-A1ZK-06 19 2073318 2073318 G A MOB3A 3'UTR 0.37 TCGA-FS-A1ZK-06 19 21934717 21934717 C T ZNF100 Intron 0.56 TCGA-FS-A1ZK-06 19 22363276 22363276 G A ZNF676 Missense_Mutation p.H415Y 0.47 deleterious(0.03) probably_damaging(0.984) TCGA-FS-A1ZK-06 19 22363614 22363614 A G ZNF676 Missense_Mutation p.I302T 0.30 deleterious(0.03) benign(0.19) TCGA-FS-A1ZK-06 19 22951111 22951111 G A ZNF99 Silent p.P74P 0.45 TCGA-FS-A1ZK-06 19 23542432 23542432 C T ZNF91 Missense_Mutation p.E1117K 0.44 tolerated(0.79) benign(0.439) TCGA-FS-A1ZK-06 19 23543137 23543137 A C ZNF91 Missense_Mutation p.S882A 0.41 deleterious(0.01) benign(0.023) TCGA-FS-A1ZK-06 19 2852712 2852712 C T ZNF555 Missense_Mutation p.R217W 0.42 deleterious(0.02) probably_damaging(0.974) TCGA-FS-A1ZK-06 19 2853905 2853905 G A ZNF555 Silent p.Q614Q 0.53 TCGA-FS-A1ZK-06 19 312226 312226 A T MIER2 Missense_Mutation p.L285Q 0.24 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZK-06 19 32973220 32973220 C T DPY19L3 3'UTR 0.31 TCGA-FS-A1ZK-06 19 33350862 33350862 G A SLC7A9 Missense_Mutation p.P253L 0.26 tolerated(0.1) probably_damaging(0.926) TCGA-FS-A1ZK-06 19 33359359 33359359 T G SLC7A9 Missense_Mutation p.K28Q 0.13 tolerated(0.13) benign(0.052) TCGA-FS-A1ZK-06 19 33600768 33600768 C T GPATCH1 Silent p.S477S 0.08 TCGA-FS-A1ZK-06 19 33608800 33608800 G A GPATCH1 Missense_Mutation p.A756T 0.10 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 19 34868484 34868484 C T GPI Intron 0.24 TCGA-FS-A1ZK-06 19 34890992 34890992 C T GPI 3'UTR 0.07 TCGA-FS-A1ZK-06 19 36214692 36214692 C T KMT2B Missense_Mutation p.P1040S 0.23 probably_damaging(0.968) TCGA-FS-A1ZK-06 19 36279003 36279003 C T ARHGAP33 Missense_Mutation p.P1018L 0.29 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-FS-A1ZK-06 19 36398155 36398155 T C TYROBP Missense_Mutation p.K81E 0.23 tolerated(0.06) possibly_damaging(0.888) TCGA-FS-A1ZK-06 19 37101557 37101557 C T ZNF382 Missense_Mutation p.H49Y 0.22 tolerated(0.88) benign(0.005) TCGA-FS-A1ZK-06 19 37310048 37310048 C A ZNF790 Missense_Mutation p.G400W 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZK-06 19 37441101 37441101 T C ZNF568 Missense_Mutation p.L349P 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 19 38024235 38024235 G A ZNF793 Silent p.V56V 0.30 TCGA-FS-A1ZK-06 19 38161131 38161131 G A ZNF781 5'UTR 0.17 TCGA-FS-A1ZK-06 19 38572510 38572510 C T SIPA1L3 Missense_Mutation p.S102F 0.30 deleterious(0.04) possibly_damaging(0.65) TCGA-FS-A1ZK-06 19 38609982 38609982 C T SIPA1L3 Silent p.F776F 0.22 TCGA-FS-A1ZK-06 19 38899412 38899412 G A FAM98C Missense_Mutation p.D314N 0.26 deleterious(0) probably_damaging(0.957) TCGA-FS-A1ZK-06 19 38931463 38931463 G A RYR1 Missense_Mutation p.G42S 0.32 probably_damaging(1) TCGA-FS-A1ZK-06 19 38996449 38996449 A T RYR1 Nonsense_Mutation p.K2802* 0.30 TCGA-FS-A1ZK-06 19 39329542 39329542 C T HNRNPL Silent p.L449L 0.41 TCGA-FS-A1ZK-06 19 39667318 39667318 C T PAK4 Missense_Mutation p.A483V 0.26 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 19 39667319 39667319 C T PAK4 Silent p.A483A 0.26 TCGA-FS-A1ZK-06 19 39961136 39961136 C T SUPT5H Silent p.I550I 0.28 TCGA-FS-A1ZK-06 19 40376785 40376785 C T FCGBP Silent p.L3879L 0.25 TCGA-FS-A1ZK-06 19 40480516 40480516 C T PSMC4 Silent p.L185L 0.33 TCGA-FS-A1ZK-06 19 41066344 41066344 C T SPTBN4 Intron 0.66 TCGA-FS-A1ZK-06 19 41129549 41129549 G A LTBP4 Silent p.K1265K 0.48 TCGA-FS-A1ZK-06 19 41350595 41350595 T G CYP2A6 Missense_Mutation p.H415P 0.41 probably_damaging(0.978) TCGA-FS-A1ZK-06 19 41442004 41442004 C T CYP2B7P Intron 0.24 TCGA-FS-A1ZK-06 19 41828654 41828654 C T CCDC97 3'UTR 0.25 TCGA-FS-A1ZK-06 19 41925149 41925149 G A BCKDHA Silent p.K198K 0.47 TCGA-FS-A1ZK-06 19 42085700 42085700 C T CEACAM21 Intron 0.20 TCGA-FS-A1ZK-06 19 42600377 42600377 G A POU2F2 Silent p.L174L 0.40 TCGA-FS-A1ZK-06 19 42813859 42813859 C T PRR19 Silent p.A41A 0.40 TCGA-FS-A1ZK-06 19 43093719 43093719 C T CEACAM8 Missense_Mutation p.R198K 0.37 tolerated(0.05) possibly_damaging(0.905) TCGA-FS-A1ZK-06 19 43680138 43680138 T C PSG5 Missense_Mutation p.E198G 0.32 tolerated(0.43) benign(0.029) TCGA-FS-A1ZK-06 19 43683301 43683301 G A PSG5 Intron 0.28 TCGA-FS-A1ZK-06 19 44223121 44223121 C T IRGC Silent p.F137F 0.53 TCGA-FS-A1ZK-06 19 44471126 44471126 C T ZNF221 Missense_Mutation p.S491F 0.42 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZK-06 19 44947131 44947131 G A ZNF229 5'UTR 0.56 TCGA-FS-A1ZK-06 19 4510756 4510756 G T PLIN4 Silent p.T1058T 0.50 TCGA-FS-A1ZK-06 19 4538435 4538435 G A LRG1 Silent p.F187F 0.39 TCGA-FS-A1ZK-06 19 46029464 46029464 C T VASP 3'UTR 0.63 TCGA-FS-A1ZK-06 19 46094512 46094512 G A GPR4 Silent p.L205L 0.30 TCGA-FS-A1ZK-06 19 46216473 46216473 G A FBXO46 Missense_Mutation p.P94L 0.29 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 19 46375569 46375569 G A FOXA3 Silent p.G102G 0.41 TCGA-FS-A1ZK-06 19 463914 463914 C T ODF3L2 Missense_Mutation p.R267Q 0.43 tolerated(0.26) benign(0.032) TCGA-FS-A1ZK-06 19 47181848 47181848 G A PRKD2 Missense_Mutation p.P715S 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 19 47570692 47570692 G A ZC3H4 Missense_Mutation p.P945S 0.40 unknown(0) TCGA-FS-A1ZK-06 19 47570693 47570693 G A ZC3H4 Silent p.L944L 0.40 TCGA-FS-A1ZK-06 19 47844143 47844143 G A C5AR2 Silent p.L29L 0.35 TCGA-FS-A1ZK-06 19 47884494 47884494 C A DHX34 Missense_Mutation p.H1071N 0.40 tolerated(0.54) benign(0.005) TCGA-FS-A1ZK-06 19 47884495 47884495 A C DHX34 Missense_Mutation p.H1071P 0.40 deleterious(0.03) benign(0.397) TCGA-FS-A1ZK-06 19 4859643 4859643 A G PLIN3 Silent p.L103L 0.42 TCGA-FS-A1ZK-06 19 48953957 48953957 C T GRWD1 Silent p.I239I 0.44 TCGA-FS-A1ZK-06 19 49000689 49000689 C T LMTK3 Missense_Mutation p.D1242N 0.25 unknown(0) TCGA-FS-A1ZK-06 19 49000690 49000690 C T LMTK3 Silent p.L1241L 0.26 TCGA-FS-A1ZK-06 19 49364692 49364692 G A PLEKHA4 Missense_Mutation p.P111L 0.40 deleterious(0.03) probably_damaging(0.947) TCGA-FS-A1ZK-06 19 49364693 49364693 G A PLEKHA4 Missense_Mutation p.P111S 0.40 tolerated(0.14) possibly_damaging(0.817) TCGA-FS-A1ZK-06 19 49547472 49547472 G A CGB5 Silent p.E2E 0.38 TCGA-FS-A1ZK-06 19 50203940 50203940 G A CPT1C Splice_Site p.X94_splice 0.48 TCGA-FS-A1ZK-06 19 50827173 50827173 G A KCNC3 Missense_Mutation p.P346L 0.30 deleterious(0.01) benign(0.014) TCGA-FS-A1ZK-06 19 50837578 50837578 C T KCNC3 5'Flank 0.60 TCGA-FS-A1ZK-06 19 51022309 51022309 C T LRRC4B Missense_Mutation p.D221N 0.70 deleterious(0.01) possibly_damaging(0.548) TCGA-FS-A1ZK-06 19 51226853 51226853 G A CLEC11A Missense_Mutation p.G24E 0.50 tolerated_low_confidence(0.1) benign(0.011) TCGA-FS-A1ZK-06 19 51274811 51274811 C T GPR32 Silent p.F318F 0.45 TCGA-FS-A1ZK-06 19 51328972 51328972 C T KLK15 3'Flank 0.27 TCGA-FS-A1ZK-06 19 52003419 52003419 C T SIGLEC12 Missense_Mutation p.G188E 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 19 52031489 52031489 G A SIGLEC6 Missense_Mutation p.A344V 0.29 tolerated(0.15) benign(0.002) TCGA-FS-A1ZK-06 19 52249517 52249517 G A FPR1 Missense_Mutation p.S244F 0.50 deleterious(0.02) possibly_damaging(0.652) TCGA-FS-A1ZK-06 19 52658279 52658279 C T ZNF836 Missense_Mutation p.G886E 0.39 tolerated(0.07) possibly_damaging(0.611) TCGA-FS-A1ZK-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.41 deleterious(0.01) possibly_damaging(0.895) TCGA-FS-A1ZK-06 19 52954849 52954849 T G ZNF578 5'Flank 0.27 TCGA-FS-A1ZK-06 19 53344355 53344355 G A ZNF468 Missense_Mutation p.L398F 0.16 deleterious(0.05) probably_damaging(0.966) TCGA-FS-A1ZK-06 19 53762121 53762121 C T VN1R2 Missense_Mutation p.L165F 0.34 tolerated(0.19) benign(0.366) TCGA-FS-A1ZK-06 19 53993859 53993859 C T ZNF813 Nonsense_Mutation p.R125* 0.26 TCGA-FS-A1ZK-06 19 54080919 54080919 C T ZNF331 Missense_Mutation p.H369Y 0.17 tolerated(0.27) probably_damaging(0.99) TCGA-FS-A1ZK-06 19 54200848 54200848 C T MIR525 RNA 0.23 TCGA-FS-A1ZK-06 19 54327292 54327292 C T NLRP12 Missense_Mutation p.G46E 0.17 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 19 54377065 54377065 C T MYADM Silent p.F94F 0.33 TCGA-FS-A1ZK-06 19 54386423 54386423 C T PRKCG Silent p.I59I 0.30 TCGA-FS-A1ZK-06 19 54396328 54396328 A C PRKCG Missense_Mutation p.E303A 0.26 deleterious(0.02) benign(0.354) TCGA-FS-A1ZK-06 19 54496004 54496004 C T CACNG6 5'UTR 0.50 TCGA-FS-A1ZK-06 19 54778659 54778659 C T LILRB2 Missense_Mutation p.D559N 0.28 deleterious(0) possibly_damaging(0.649) TCGA-FS-A1ZK-06 19 54784319 54784319 G A LILRB2 Silent p.L11L 0.29 TCGA-FS-A1ZK-06 19 55143505 55143505 G A LILRB1 Missense_Mutation p.G160R 0.36 deleterious(0) benign(0.051) TCGA-FS-A1ZK-06 19 55143506 55143506 G A LILRB1 Missense_Mutation p.G160E 0.35 deleterious(0) benign(0.085) TCGA-FS-A1ZK-06 19 55144101 55144101 C T LILRB1 Missense_Mutation p.T283I 0.25 deleterious(0.04) benign(0.033) TCGA-FS-A1ZK-06 19 55144102 55144102 C T LILRB1 Silent p.T283T 0.25 TCGA-FS-A1ZK-06 19 55144129 55144129 G A LILRB1 Silent p.G292G 0.34 TCGA-FS-A1ZK-06 19 55378000 55378000 G A KIR3DL2 Silent p.Q394Q 0.32 TCGA-FS-A1ZK-06 19 55496493 55496493 T C NLRP2 Silent p.G703G 0.25 TCGA-FS-A1ZK-06 19 55670904 55670904 G A DNAAF3 Missense_Mutation p.A479V 0.26 deleterious(0.03) probably_damaging(0.982) TCGA-FS-A1ZK-06 19 55670969 55670969 G A DNAAF3 Silent p.V457V 0.27 TCGA-FS-A1ZK-06 19 55816891 55816891 C T BRSK1 Silent p.F609F 0.30 TCGA-FS-A1ZK-06 19 56226485 56226485 C T NLRP9 Missense_Mutation p.D813N 0.30 tolerated(0.05) benign(0.358) TCGA-FS-A1ZK-06 19 56303677 56303677 C T NLRP11 Missense_Mutation p.E835K 0.27 tolerated(0.17) benign(0.027) TCGA-FS-A1ZK-06 19 56321526 56321526 G A NLRP11 Silent p.F150F 0.45 TCGA-FS-A1ZK-06 19 56467422 56467422 C T NLRP8 Silent p.F666F 0.24 TCGA-FS-A1ZK-06 19 56701519 56701519 G A ZSCAN5B Missense_Mutation p.R389W 0.35 deleterious(0.01) benign(0.011) TCGA-FS-A1ZK-06 19 5679657 5679657 G A C19orf70 Silent p.P49P 0.32 TCGA-FS-A1ZK-06 19 57051083 57051083 C T ZFP28 Nonsense_Mutation p.Q100* 0.18 TCGA-FS-A1ZK-06 19 57088341 57088341 C T ZNF470 Missense_Mutation p.H182Y 0.28 tolerated(0.58) benign(0.305) TCGA-FS-A1ZK-06 19 57325597 57325597 C T PEG3 Missense_Mutation p.E1405K 0.28 tolerated(0.08) possibly_damaging(0.905) TCGA-FS-A1ZK-06 19 57334191 57334191 C T PEG3 Nonsense_Mutation p.W165* 0.41 TCGA-FS-A1ZK-06 19 57335673 57335673 G A PEG3 Silent p.L117L 0.32 TCGA-FS-A1ZK-06 19 5746029 5746029 C T CATSPERD Silent p.L255L 0.50 TCGA-FS-A1ZK-06 19 57641248 57641248 G A USP29 Missense_Mutation p.G402E 0.32 tolerated(1) benign(0.104) TCGA-FS-A1ZK-06 19 57646553 57646553 G A ZIM3 Silent p.I384I 0.28 TCGA-FS-A1ZK-06 19 57646987 57646987 G A ZIM3 Nonsense_Mutation p.Q240* 0.33 TCGA-FS-A1ZK-06 19 57839423 57839423 C T ZNF543 Missense_Mutation p.S198F 0.25 tolerated(0.62) benign(0.129) TCGA-FS-A1ZK-06 19 57932571 57932571 C T ZNF17 Missense_Mutation p.R571W 0.36 deleterious(0.02) probably_damaging(0.963) TCGA-FS-A1ZK-06 19 58152834 58152834 G A ZNF211 Missense_Mutation p.S392N 0.18 tolerated(0.72) benign(0.189) TCGA-FS-A1ZK-06 19 58213273 58213273 C T ZNF154 Silent p.R348R 0.25 TCGA-FS-A1ZK-06 19 5843630 5843630 G A FUT3 3'UTR 0.31 TCGA-FS-A1ZK-06 19 5843631 5843631 G A FUT3 3'UTR 0.31 TCGA-FS-A1ZK-06 19 58489799 58489799 G A ZNF606 Missense_Mutation p.S750F 0.38 tolerated(0.71) probably_damaging(0.991) TCGA-FS-A1ZK-06 19 58598357 58598357 C T ZSCAN18 Missense_Mutation p.E277K 0.12 tolerated(0.1) possibly_damaging(0.877) TCGA-FS-A1ZK-06 19 58862754 58862754 C T A1BG Intron 0.27 TCGA-FS-A1ZK-06 19 58988866 58988866 C T ZNF446 Missense_Mutation p.P94L 0.11 deleterious(0) possibly_damaging(0.876) TCGA-FS-A1ZK-06 19 59010861 59010861 G A SLC27A5 Silent p.F555F 0.16 TCGA-FS-A1ZK-06 19 6374273 6374273 C A ALKBH7 Silent p.I88I 0.49 TCGA-FS-A1ZK-06 19 6468102 6468102 C T DENND1C Missense_Mutation p.D607N 0.40 deleterious_low_confidence(0.04) benign(0.155) TCGA-FS-A1ZK-06 19 6732361 6732361 G A GPR108 Silent p.I346I 0.33 TCGA-FS-A1ZK-06 19 6908774 6908774 T A EMR1 Silent p.V371V 0.44 TCGA-FS-A1ZK-06 19 7120643 7120643 G A INSR Missense_Mutation p.S1216F 0.38 tolerated(0.24) benign(0.007) TCGA-FS-A1ZK-06 19 757283 757283 C T MISP Missense_Mutation p.P113S 0.45 tolerated(0.24) benign(0.012) TCGA-FS-A1ZK-06 19 8156470 8156470 G A FBN3 Silent p.I1970I 0.47 TCGA-FS-A1ZK-06 19 8808449 8808449 C A ACTL9 Silent p.G201G 0.34 TCGA-FS-A1ZK-06 19 8931904 8931904 G A ZNF558 Silent p.L67L 0.48 TCGA-FS-A1ZK-06 19 9049258 9049258 C T MUC16 Silent p.R10791R 0.41 TCGA-FS-A1ZK-06 19 9059045 9059045 G A MUC16 Silent p.F9467F 0.42 TCGA-FS-A1ZK-06 19 9060492 9060492 G A MUC16 Missense_Mutation p.A8985V 0.41 unknown(0) TCGA-FS-A1ZK-06 19 9060867 9060867 G A MUC16 Missense_Mutation p.S8860F 0.49 unknown(0) TCGA-FS-A1ZK-06 19 9061543 9061543 C T MUC16 Missense_Mutation p.D8635N 0.46 unknown(0) TCGA-FS-A1ZK-06 19 9062833 9062833 C T MUC16 Missense_Mutation p.D8205N 0.49 unknown(0) TCGA-FS-A1ZK-06 19 9066587 9066587 C T MUC16 Silent p.L6953L 0.43 TCGA-FS-A1ZK-06 19 9068506 9068506 C T MUC16 Missense_Mutation p.E6314K 0.28 unknown(0) TCGA-FS-A1ZK-06 19 9077116 9077116 G A MUC16 Missense_Mutation p.P3444S 0.38 unknown(0) TCGA-FS-A1ZK-06 19 9077817 9077817 C T MUC16 Missense_Mutation p.S3210N 0.50 unknown(0) TCGA-FS-A1ZK-06 19 9082689 9082689 G A MUC16 Silent p.F3042F 0.32 TCGA-FS-A1ZK-06 19 9083324 9083324 C T MUC16 Missense_Mutation p.E2831K 0.47 unknown(0) TCGA-FS-A1ZK-06 19 9086712 9086712 G A MUC16 Silent p.S1701S 0.45 TCGA-FS-A1ZK-06 19 9090331 9090331 G A MUC16 Missense_Mutation p.S495F 0.55 unknown(0) TCGA-FS-A1ZK-06 19 9213450 9213450 A T OR7G2 Missense_Mutation p.L178H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZK-06 19 9297116 9297116 G A OR7D2 Missense_Mutation p.R220Q 0.45 tolerated_low_confidence(0.68) benign(0.01) TCGA-FS-A1ZK-06 1 103347311 103347311 G A COL11A1 Missense_Mutation p.S1661L 0.25 unknown(0) TCGA-FS-A1ZK-06 1 10412779 10412779 C T KIF1B Missense_Mutation p.S1301F 0.24 tolerated(0.22) possibly_damaging(0.87) TCGA-FS-A1ZK-06 1 10464303 10464303 C T PGD Missense_Mutation p.P139L 0.24 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZK-06 1 109270433 109270433 C T FNDC7 Missense_Mutation p.P372L 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 109525357 109525357 A G WDR47 Silent p.L722L 0.28 TCGA-FS-A1ZK-06 1 110085662 110085662 C T GPR61 Silent p.I6I 0.39 TCGA-FS-A1ZK-06 1 110085663 110085663 C T GPR61 Missense_Mutation p.P7S 0.39 tolerated(0.42) unknown(0) TCGA-FS-A1ZK-06 1 111060402 111060402 G A KCNA10 Silent p.S336S 0.31 TCGA-FS-A1ZK-06 1 11141286 11141286 G A EXOSC10 Silent p.P430P 0.27 TCGA-FS-A1ZK-06 1 113269340 113269340 G A FAM19A3 3'UTR 0.33 TCGA-FS-A1ZK-06 1 114636410 114636410 A C SYT6 Nonstop_Mutation p.*426Gext*41 0.28 TCGA-FS-A1ZK-06 1 11561714 11561714 G A PTCHD2 Missense_Mutation p.R222Q 0.21 tolerated(0.54) benign(0.001) TCGA-FS-A1ZK-06 1 116206695 116206695 C T VANGL1 Silent p.V206V 0.29 TCGA-FS-A1ZK-06 1 117122046 117122046 G A IGSF3 Missense_Mutation p.S1121L 0.33 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZK-06 1 117568166 117568166 G A CD101 Missense_Mutation p.E822K 0.34 tolerated(0.89) benign(0.005) TCGA-FS-A1ZK-06 1 118514651 118514651 C T SPAG17 Missense_Mutation p.G2054E 0.28 deleterious(0.01) possibly_damaging(0.511) TCGA-FS-A1ZK-06 1 118567984 118567984 G A SPAG17 Silent p.Y1262Y 0.28 TCGA-FS-A1ZK-06 1 119428089 119428089 G A TBX15 Missense_Mutation p.P253S 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-FS-A1ZK-06 1 119964532 119964532 C T HSD3B2 Silent p.I136I 0.27 TCGA-FS-A1ZK-06 1 119965250 119965250 G A HSD3B2 3'UTR 0.33 TCGA-FS-A1ZK-06 1 12017929 12017929 C T PLOD1 Missense_Mutation p.P258S 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-FS-A1ZK-06 1 120345348 120345348 C T REG4 Intron 0.25 TCGA-FS-A1ZK-06 1 120436799 120436799 C T ADAM30 Missense_Mutation p.E721K 0.29 tolerated(1) benign(0.001) TCGA-FS-A1ZK-06 1 120437893 120437893 C T ADAM30 Missense_Mutation p.R356K 0.28 tolerated(1) benign(0.02) TCGA-FS-A1ZK-06 1 12175783 12175783 C T TNFRSF8 Nonsense_Mutation p.Q315* 0.31 TCGA-FS-A1ZK-06 1 12785820 12785820 G A AADACL3 Missense_Mutation p.E304K 0.24 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 1 12806322 12806322 C T C1orf158 5'UTR 0.32 TCGA-FS-A1ZK-06 1 12819250 12819250 C T C1orf158 Missense_Mutation p.P78L 0.26 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 1 12837394 12837394 C T PRAMEF12 Silent p.I368I 0.27 TCGA-FS-A1ZK-06 1 12888566 12888566 G A PRAMEF11 5'UTR 0.26 TCGA-FS-A1ZK-06 1 13717026 13717026 C T PRAMEF17 Silent p.I171I 0.38 TCGA-FS-A1ZK-06 1 143767584 143767584 T G PPIAL4G Missense_Mutation p.I89L 0.16 tolerated_low_confidence(0.06) benign(0.097) TCGA-FS-A1ZK-06 1 145492310 145492310 C T LIX1L Missense_Mutation p.P178S 0.33 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZK-06 1 147230828 147230828 G A GJA5 Silent p.F173F 0.33 TCGA-FS-A1ZK-06 1 148932815 148932815 C T RP11-14N7.2 RNA 0.06 TCGA-FS-A1ZK-06 1 149906993 149906993 G A MTMR11 Silent p.L118L 0.30 TCGA-FS-A1ZK-06 1 150445429 150445429 C T RPRD2 Silent p.T1335T 0.68 TCGA-FS-A1ZK-06 1 150621114 150621114 G A GOLPH3L Silent p.L181L 0.72 TCGA-FS-A1ZK-06 1 151070367 151070367 G A GABPB2 Missense_Mutation p.A171T 0.39 tolerated(0.37) benign(0.005) TCGA-FS-A1ZK-06 1 151262009 151262009 A G ZNF687 Missense_Mutation p.H876R 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 152188255 152188255 G A HRNR Silent p.S1950S 0.19 TCGA-FS-A1ZK-06 1 152324716 152324716 C T FLG2 Missense_Mutation p.G1849E 0.23 probably_damaging(1) TCGA-FS-A1ZK-06 1 152324872 152324872 C T FLG2 Missense_Mutation p.G1797E 0.21 probably_damaging(1) TCGA-FS-A1ZK-06 1 152382122 152382122 C T CRNN Missense_Mutation p.R479Q 0.18 tolerated(0.34) benign(0.002) TCGA-FS-A1ZK-06 1 153122541 153122541 G A SPRR2G Missense_Mutation p.P16S 0.23 unknown(0) TCGA-FS-A1ZK-06 1 153721217 153721217 C T INTS3 Silent p.I190I 0.25 TCGA-FS-A1ZK-06 1 153923985 153923985 G A CRTC2 Silent p.T385T 0.29 TCGA-FS-A1ZK-06 1 153963240 153963240 T A RPS27 5'UTR 0.72 TCGA-FS-A1ZK-06 1 154018578 154018578 C T NUP210L Silent p.R1221R 0.46 TCGA-FS-A1ZK-06 1 154072525 154072525 A C NUP210L Missense_Mutation p.C638W 0.23 tolerated(0.15) benign(0.227) TCGA-FS-A1ZK-06 1 154403046 154403046 C T IL6R Missense_Mutation p.S141F 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 1 154403047 154403047 C T IL6R Silent p.S141S 0.63 TCGA-FS-A1ZK-06 1 154574527 154574527 G A ADAR Silent p.I197I 0.29 TCGA-FS-A1ZK-06 1 154947341 154947341 G A CKS1B Intron 0.23 TCGA-FS-A1ZK-06 1 155108417 155108417 C G SLC50A1 Silent p.L10L 0.29 TCGA-FS-A1ZK-06 1 155174669 155174669 C T THBS3 Missense_Mutation p.G208E 0.23 tolerated(1) benign(0.003) TCGA-FS-A1ZK-06 1 155264450 155264450 C T PKLR Missense_Mutation p.G263E 0.71 deleterious(0) possibly_damaging(0.493) TCGA-FS-A1ZK-06 1 155450033 155450033 G A ASH1L Silent p.S876S 0.70 TCGA-FS-A1ZK-06 1 155450034 155450034 G A ASH1L Missense_Mutation p.S876F 0.70 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 1 155722074 155722074 G T GON4L Silent p.S2049S 0.22 TCGA-FS-A1ZK-06 1 155796811 155796811 G C GON4L Missense_Mutation p.Q172E 0.15 tolerated_low_confidence(0.13) benign(0.001) TCGA-FS-A1ZK-06 1 156124346 156124346 C T SEMA4A 5'UTR 0.24 TCGA-FS-A1ZK-06 1 156127865 156127865 C T SEMA4A Missense_Mutation p.P102L 0.19 tolerated(0.27) benign(0.426) TCGA-FS-A1ZK-06 1 156670740 156670740 C G CRABP2 Missense_Mutation p.V59L 0.19 tolerated(0.36) benign(0.003) TCGA-FS-A1ZK-06 1 156911701 156911701 G A ARHGEF11 Missense_Mutation p.P1136L 0.29 tolerated(0.14) benign(0.126) TCGA-FS-A1ZK-06 1 157558991 157558991 C T FCRL4 Intron 0.19 TCGA-FS-A1ZK-06 1 1575742 1575742 G A CDK11B Missense_Mutation p.P386S 0.20 unknown(0) TCGA-FS-A1ZK-06 1 157665914 157665914 C T FCRL3 Missense_Mutation p.E350K 0.73 tolerated(0.12) possibly_damaging(0.597) TCGA-FS-A1ZK-06 1 157772381 157772381 G A FCRL1 Silent p.V131V 0.75 TCGA-FS-A1ZK-06 1 158390485 158390485 G A OR10K2 Missense_Mutation p.P58S 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 1 158686981 158686981 C T OR6K3 Missense_Mutation p.V309M 0.16 tolerated(0.52) benign(0.011) TCGA-FS-A1ZK-06 1 158687328 158687328 G A OR6K3 Missense_Mutation p.S193F 0.24 tolerated(0.06) benign(0.316) TCGA-FS-A1ZK-06 1 159166195 159166195 C T CADM3 Missense_Mutation p.R279C 0.70 deleterious(0) possibly_damaging(0.886) TCGA-FS-A1ZK-06 1 159273800 159273800 G A FCER1A Silent p.G53G 0.24 TCGA-FS-A1ZK-06 1 159283829 159283829 G A OR10J3 Silent p.V207V 0.17 TCGA-FS-A1ZK-06 1 159409836 159409836 C T OR10J1 Silent p.L96L 0.63 TCGA-FS-A1ZK-06 1 159684318 159684318 C T CRP 5'UTR 0.69 TCGA-FS-A1ZK-06 1 159684319 159684319 C T CRP 5'UTR 0.71 TCGA-FS-A1ZK-06 1 159860371 159860371 G A CCDC19 Silent p.L57L 0.23 TCGA-FS-A1ZK-06 1 159904006 159904006 C T IGSF9 Missense_Mutation p.D360N 0.71 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 1 159904007 159904007 C T IGSF9 Silent p.K359K 0.69 TCGA-FS-A1ZK-06 1 159921548 159921548 C T SLAMF9 Missense_Mutation p.R258Q 0.42 tolerated(0.26) benign(0.032) TCGA-FS-A1ZK-06 1 160105224 160105224 G A ATP1A2 Missense_Mutation p.G706R 0.14 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 1 160128877 160128877 G A ATP1A4 Missense_Mutation p.G204E 0.15 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 160151744 160151744 C T ATP1A4 Silent p.I964I 0.22 TCGA-FS-A1ZK-06 1 160209352 160209352 G A DCAF8 Intron 0.16 TCGA-FS-A1ZK-06 1 160340473 160340473 G A NHLH1 5'UTR 0.22 TCGA-FS-A1ZK-06 1 160523164 160523164 C T CD84 Missense_Mutation p.R255K 0.21 tolerated(0.27) benign(0.007) TCGA-FS-A1ZK-06 1 160850994 160850994 C T ITLN1 Missense_Mutation p.D172N 0.65 tolerated(0.85) benign(0.002) TCGA-FS-A1ZK-06 1 162467765 162467765 C T UHMK1 5'UTR 0.18 TCGA-FS-A1ZK-06 1 16262683 16262683 C T SPEN Silent p.P3316P 0.24 TCGA-FS-A1ZK-06 1 16458768 16458768 C T EPHA2 Missense_Mutation p.E706K 0.44 tolerated(1) possibly_damaging(0.468) TCGA-FS-A1ZK-06 1 165175183 165175183 G A LMX1A Silent p.I302I 0.20 TCGA-FS-A1ZK-06 1 16577532 16577532 C T FBXO42 Missense_Mutation p.G596E 0.33 tolerated_low_confidence(0.09) benign(0.003) TCGA-FS-A1ZK-06 1 166896407 166896407 A G ILDR2 Silent p.G297G 0.69 TCGA-FS-A1ZK-06 1 167805628 167805628 C T ADCY10 Silent p.L1076L 0.28 TCGA-FS-A1ZK-06 1 168066078 168066078 A T GPR161 Missense_Mutation p.F276Y 0.23 tolerated(1) benign(0.228) TCGA-FS-A1ZK-06 1 169484697 169484697 G A F5 Silent p.S2171S 0.64 TCGA-FS-A1ZK-06 1 1696731 1696731 G A NADK Missense_Mutation p.R39W 0.29 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-FS-A1ZK-06 1 169697262 169697262 C T SELE Missense_Mutation p.G406R 0.21 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZK-06 1 171506429 171506429 G A PRRC2C Missense_Mutation p.R772K 0.26 unknown(0) TCGA-FS-A1ZK-06 1 171765992 171765992 C T METTL13 3'UTR 0.22 TCGA-FS-A1ZK-06 1 172356454 172356454 C T DNM3 Missense_Mutation p.P747L 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-FS-A1ZK-06 1 172501872 172501872 G A SUCO 5'Flank 0.23 TCGA-FS-A1ZK-06 1 172578958 172578958 G C SUCO Missense_Mutation p.K1108N 0.24 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 1 174418397 174418397 A T GPR52 3'UTR 0.29 TCGA-FS-A1ZK-06 1 175046794 175046794 G A TNN Silent p.E80E 0.70 TCGA-FS-A1ZK-06 1 175049410 175049410 G A TNN Missense_Mutation p.G299E 0.16 tolerated(0.06) probably_damaging(0.97) TCGA-FS-A1ZK-06 1 17657546 17657546 A C PADI4 Missense_Mutation p.K59Q 0.32 tolerated(0.52) possibly_damaging(0.658) TCGA-FS-A1ZK-06 1 177001815 177001815 C T ASTN1 Silent p.R214R 0.69 TCGA-FS-A1ZK-06 1 180240974 180240974 G A LHX4 Nonsense_Mutation p.W204* 0.18 TCGA-FS-A1ZK-06 1 180853152 180853152 C T XPR1 Missense_Mutation p.R681C 0.23 tolerated(0.11) benign(0.009) TCGA-FS-A1ZK-06 1 180905014 180905014 C T KIAA1614 Missense_Mutation p.H657Y 0.82 tolerated(0.8) possibly_damaging(0.651) TCGA-FS-A1ZK-06 1 18152484 18152484 G A ACTL8 Missense_Mutation p.E191K 0.41 deleterious(0.01) possibly_damaging(0.515) TCGA-FS-A1ZK-06 1 182555979 182555979 C T RNASEL 5'UTR 0.71 TCGA-FS-A1ZK-06 1 183196822 183196822 C G LAMC2 Silent p.P486P 0.26 TCGA-FS-A1ZK-06 1 183206618 183206618 G A LAMC2 Silent p.Q911Q 0.69 TCGA-FS-A1ZK-06 1 184702001 184702001 G A EDEM3 Silent p.F194F 0.25 TCGA-FS-A1ZK-06 1 184787892 184787892 C T FAM129A Silent p.L351L 0.20 TCGA-FS-A1ZK-06 1 186083184 186083184 C T HMCN1 Silent p.I3735I 0.46 TCGA-FS-A1ZK-06 1 186088383 186088383 G A HMCN1 Missense_Mutation p.R3970K 0.18 probably_damaging(0.982) TCGA-FS-A1ZK-06 1 186088384 186088384 G A HMCN1 Silent p.R3970R 0.18 TCGA-FS-A1ZK-06 1 186281959 186281959 T A PRG4 Silent p.V1350V 0.29 TCGA-FS-A1ZK-06 1 18809815 18809815 C T KLHDC7A 3'UTR 0.33 TCGA-FS-A1ZK-06 1 19403252 19403252 C T UBR4 Missense_Mutation p.E5157K 0.32 probably_damaging(0.973) TCGA-FS-A1ZK-06 1 19454738 19454738 G A UBR4 Silent p.S3026S 0.28 TCGA-FS-A1ZK-06 1 19454739 19454739 G A UBR4 Missense_Mutation p.S3026F 0.28 benign(0.352) TCGA-FS-A1ZK-06 1 197403878 197403878 T C CRB1 Missense_Mutation p.L962S 0.31 tolerated(0.22) possibly_damaging(0.556) TCGA-FS-A1ZK-06 1 197889123 197889123 G A LHX9 Missense_Mutation p.E66K 0.22 tolerated(0.15) benign(0.01) TCGA-FS-A1ZK-06 1 200571082 200571082 G A KIF14 Silent p.A698A 0.20 TCGA-FS-A1ZK-06 1 200969679 200969679 C T KIF21B Silent p.R508R 0.21 TCGA-FS-A1ZK-06 1 201010696 201010696 G A CACNA1S Silent p.F1690F 0.68 TCGA-FS-A1ZK-06 1 201332585 201332585 C T TNNT2 Intron 0.27 TCGA-FS-A1ZK-06 1 201334796 201334796 G A TNNT2 Missense_Mutation p.S69L 0.61 tolerated(0.85) benign(0) TCGA-FS-A1ZK-06 1 203134378 203134378 C T ADORA1 Intron 0.19 TCGA-FS-A1ZK-06 1 205052637 205052637 G A TMEM81 3'UTR 0.18 TCGA-FS-A1ZK-06 1 205549855 205549855 G A MFSD4 Missense_Mutation p.E166K 0.71 deleterious(0.03) possibly_damaging(0.482) TCGA-FS-A1ZK-06 1 205817044 205817044 G A PM20D1 Silent p.A75A 0.14 TCGA-FS-A1ZK-06 1 207039919 207039919 C T IL20 Missense_Mutation p.L106F 0.73 tolerated(0.18) benign(0.376) TCGA-FS-A1ZK-06 1 207106416 207106416 C T PIGR Missense_Mutation p.D601N 0.26 tolerated(0.82) benign(0.001) TCGA-FS-A1ZK-06 1 207252345 207252345 C T PFKFB2 3'Flank 0.22 TCGA-FS-A1ZK-06 1 207785184 207785184 C T CR1 Missense_Mutation p.A2153V 0.20 tolerated(0.2) probably_damaging(0.997) TCGA-FS-A1ZK-06 1 208200441 208200441 G A PLXNA2 3'UTR 0.27 TCGA-FS-A1ZK-06 1 209963884 209963884 C T IRF6 Missense_Mutation p.R339K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZK-06 1 210415625 210415625 A T SERTAD4 Missense_Mutation p.K338N 0.24 deleterious(0.01) benign(0.327) TCGA-FS-A1ZK-06 1 214556883 214556883 G A PTPN14 Missense_Mutation p.P772L 0.13 tolerated(0.88) benign(0.001) TCGA-FS-A1ZK-06 1 215259779 215259779 A C KCNK2 Missense_Mutation p.T39P 0.75 deleterious_low_confidence(0.04) benign(0.177) TCGA-FS-A1ZK-06 1 216258115 216258115 C T USH2A Missense_Mutation p.E1698K 0.24 benign(0.14) TCGA-FS-A1ZK-06 1 21928215 21928215 G A RAP1GAP Silent p.S602S 0.38 TCGA-FS-A1ZK-06 1 220312443 220312443 C A IARS2 Missense_Mutation p.Q757K 0.25 tolerated(0.2) probably_damaging(0.976) TCGA-FS-A1ZK-06 1 221057631 221057631 C T HLX Missense_Mutation p.P351L 0.65 tolerated(0.06) benign(0.002) TCGA-FS-A1ZK-06 1 22173091 22173091 G A HSPG2 Silent p.A2722A 0.32 TCGA-FS-A1ZK-06 1 222798135 222798135 C T MIA3 Missense_Mutation p.P98L 0.64 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 229623321 229623321 A C NUP133 Missense_Mutation p.F412V 0.69 tolerated(0.5) benign(0.099) TCGA-FS-A1ZK-06 1 22973763 22973763 G - C1QC Frame_Shift_Del p.G76Efs*62 0.22 TCGA-FS-A1ZK-06 1 233394984 233394984 C T PCNXL2 Silent p.T208T 0.47 TCGA-FS-A1ZK-06 1 235904728 235904728 G A LYST Silent p.S2784S 0.16 TCGA-FS-A1ZK-06 1 236384259 236384259 C T ERO1LB Missense_Mutation p.G406S 0.19 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 1 236746319 236746319 G A HEATR1 Missense_Mutation p.P807S 0.66 tolerated(0.69) benign(0.005) TCGA-FS-A1ZK-06 1 23885971 23885971 C T ID3 5'UTR 0.45 TCGA-FS-A1ZK-06 1 240371666 240371666 C T FMN2 Missense_Mutation p.P1185L 0.93 unknown(0) TCGA-FS-A1ZK-06 1 24080647 24080647 C T TCEB3 Missense_Mutation p.S558F 0.28 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZK-06 1 24484157 24484157 G A IFNLR1 Silent p.P342P 0.35 TCGA-FS-A1ZK-06 1 245851531 245851531 C T KIF26B Missense_Mutation p.S1749F 0.12 deleterious(0) unknown(0) TCGA-FS-A1ZK-06 1 247200784 247200784 G A ZNF670 Silent p.S379S 0.27 TCGA-FS-A1ZK-06 1 247463992 247463992 G A ZNF496 Silent p.F531F 0.69 TCGA-FS-A1ZK-06 1 247752336 247752336 C T OR2G2 Silent p.A225A 0.13 TCGA-FS-A1ZK-06 1 248263371 248263371 G A OR2L13 Missense_Mutation p.G232R 0.24 deleterious(0) possibly_damaging(0.818) TCGA-FS-A1ZK-06 1 248367286 248367286 G A OR2M3 Missense_Mutation p.G306E 0.12 tolerated(0.13) benign(0.018) TCGA-FS-A1ZK-06 1 248570074 248570074 C T OR2T1 Missense_Mutation p.P260L 0.20 deleterious(0.02) possibly_damaging(0.766) TCGA-FS-A1ZK-06 1 248814064 248814064 C T OR2T27 Missense_Mutation p.S41N 0.17 deleterious(0) benign(0.412) TCGA-FS-A1ZK-06 1 25812149 25812149 C T TMEM57 Silent p.I453I 0.38 TCGA-FS-A1ZK-06 1 27087520 27087520 C T ARID1A Silent p.S698S 0.32 TCGA-FS-A1ZK-06 1 27088718 27088718 C T ARID1A Missense_Mutation p.P776L 0.29 unknown(0) TCGA-FS-A1ZK-06 1 27100165 27100165 C T ARID1A Missense_Mutation p.P1321S 0.34 unknown(0) TCGA-FS-A1ZK-06 1 27278866 27278866 G A C1orf172 Silent p.P2P 0.26 TCGA-FS-A1ZK-06 1 29041250 29041250 G A GMEB1 Missense_Mutation p.V563I 0.37 tolerated_low_confidence(0.38) benign(0.072) TCGA-FS-A1ZK-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.23 TCGA-FS-A1ZK-06 1 32048836 32048836 A G TINAGL1 Missense_Mutation p.N154S 0.32 tolerated(0.09) benign(0.017) TCGA-FS-A1ZK-06 1 32133812 32133812 G A COL16A1 Missense_Mutation p.P1086L 0.32 unknown(0) TCGA-FS-A1ZK-06 1 32204489 32204489 G A BAI2 Missense_Mutation p.P849S 0.16 tolerated(0.27) possibly_damaging(0.725) TCGA-FS-A1ZK-06 1 32204490 32204490 G A BAI2 Silent p.P848P 0.17 TCGA-FS-A1ZK-06 1 32279600 32279600 G A SPOCD1 Silent p.S445S 0.25 TCGA-FS-A1ZK-06 1 33236519 33236519 C T KIAA1522 Missense_Mutation p.P580L 0.33 deleterious(0) unknown(0) TCGA-FS-A1ZK-06 1 3390083 3390083 G A ARHGEF16 Missense_Mutation p.M434I 0.17 tolerated(0.07) benign(0.054) TCGA-FS-A1ZK-06 1 34192243 34192243 G A CSMD2 Silent p.L764L 0.24 TCGA-FS-A1ZK-06 1 34677988 34677988 C T C1orf94 Missense_Mutation p.L568F 0.35 tolerated(0.1) probably_damaging(0.943) TCGA-FS-A1ZK-06 1 35370480 35370480 G A DLGAP3 Missense_Mutation p.R169C 0.25 deleterious(0) probably_damaging(0.985) TCGA-FS-A1ZK-06 1 35370481 35370481 G A DLGAP3 Silent p.S168S 0.25 TCGA-FS-A1ZK-06 1 36553171 36553171 C A TEKT2 Silent p.L329L 0.31 TCGA-FS-A1ZK-06 1 37285408 37285408 G A GRIK3 Missense_Mutation p.S601F 0.37 deleterious(0) possibly_damaging(0.647) TCGA-FS-A1ZK-06 1 38078451 38078451 T C RSPO1 Silent p.P256P 0.23 TCGA-FS-A1ZK-06 1 38184057 38184057 C T EPHA10 Missense_Mutation p.G1005E 0.19 tolerated(0.05) unknown(0) TCGA-FS-A1ZK-06 1 38344050 38344050 C T INPP5B Intron 0.45 TCGA-FS-A1ZK-06 1 39381234 39381234 C T RHBDL2 Missense_Mutation p.G132E 0.24 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZK-06 1 39782178 39782178 G A MACF1 Missense_Mutation p.E1194K 0.36 benign(0.108) TCGA-FS-A1ZK-06 1 39800079 39800079 G A MACF1 Intron 0.37 TCGA-FS-A1ZK-06 1 40148263 40148263 G A HPCAL4 Missense_Mutation p.A174V 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZK-06 1 40236126 40236126 G A OXCT2 Missense_Mutation p.R268C 0.31 deleterious(0.02) possibly_damaging(0.673) TCGA-FS-A1ZK-06 1 40756656 40756656 C T ZMPSTE24 Missense_Mutation p.S397L 0.23 tolerated(0.3) benign(0.135) TCGA-FS-A1ZK-06 1 40928260 40928260 C T ZFP69B Nonsense_Mutation p.Q202* 0.30 TCGA-FS-A1ZK-06 1 43649261 43649261 G A WDR65 Splice_Site p.X159_splice 0.39 TCGA-FS-A1ZK-06 1 43748424 43748424 G A C1orf210 3'UTR 0.21 TCGA-FS-A1ZK-06 1 43850172 43850172 C T MED8 Silent p.K285K 0.23 TCGA-FS-A1ZK-06 1 43891737 43891737 C T SZT2 Silent p.V986V 0.22 TCGA-FS-A1ZK-06 1 43895512 43895512 C T SZT2 Silent p.I1378I 0.34 TCGA-FS-A1ZK-06 1 44595349 44595349 G A KLF17 Missense_Mutation p.G136R 0.29 tolerated(0.08) benign(0.175) TCGA-FS-A1ZK-06 1 44878025 44878025 C T RNF220 Missense_Mutation p.R86C 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 1 45271237 45271237 C T PLK3 Missense_Mutation p.R610C 0.34 deleterious(0) benign(0.212) TCGA-FS-A1ZK-06 1 45476265 45476265 G A HECTD3 Silent p.L161L 0.26 TCGA-FS-A1ZK-06 1 45980275 45980275 G A PRDX1 Missense_Mutation p.R140W 0.31 deleterious(0.02) benign(0.097) TCGA-FS-A1ZK-06 1 47276757 47276757 G A CYP4B1 Intron 0.29 TCGA-FS-A1ZK-06 1 47515123 47515123 G A CYP4X1 Silent p.E434E 0.21 TCGA-FS-A1ZK-06 1 48697266 48697266 G A SLC5A9 Missense_Mutation p.M245I 0.11 tolerated(0.09) probably_damaging(0.951) TCGA-FS-A1ZK-06 1 53729861 53729861 G A LRP8 Silent p.I545I 0.52 TCGA-FS-A1ZK-06 1 55136553 55136553 C T MROH7 Missense_Mutation p.S517F 0.62 deleterious(0) probably_damaging(0.937) TCGA-FS-A1ZK-06 1 55136554 55136554 C T MROH7 Silent p.S517S 0.62 TCGA-FS-A1ZK-06 1 55139793 55139793 C T MROH7 Silent p.I635I 0.33 TCGA-FS-A1ZK-06 1 55197279 55197279 C T TTC4 Silent p.L268L 0.44 TCGA-FS-A1ZK-06 1 55534645 55534645 G A USP24 3'UTR 0.64 TCGA-FS-A1ZK-06 1 57349320 57349320 C T C8A Missense_Mutation p.S274L 0.32 tolerated(0.14) benign(0.033) TCGA-FS-A1ZK-06 1 62675692 62675692 G A L1TD1 Missense_Mutation p.E416K 0.59 tolerated(0.25) unknown(0) TCGA-FS-A1ZK-06 1 62993884 62993884 C G DOCK7 Missense_Mutation p.A1261P 0.36 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 1 65351963 65351963 G A JAK1 5'UTR 0.37 TCGA-FS-A1ZK-06 1 66098952 66098952 C T LEPR Intron 0.62 TCGA-FS-A1ZK-06 1 6631072 6631072 G A TAS1R1 Missense_Mutation p.G99R 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 6640654 6640654 C T ZBTB48 5'UTR 0.25 TCGA-FS-A1ZK-06 1 67220397 67220397 G A TCTEX1D1 Missense_Mutation p.G19E 0.60 deleterious(0.02) possibly_damaging(0.873) TCGA-FS-A1ZK-06 1 67236143 67236143 G A TCTEX1D1 Missense_Mutation p.E65K 0.40 deleterious(0.03) benign(0.382) TCGA-FS-A1ZK-06 1 68912499 68912499 G A RPE65 Missense_Mutation p.P47S 0.44 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 1 70460305 70460305 T C LRRC7 Silent p.N293N 0.31 TCGA-FS-A1ZK-06 1 71873147 71873147 C A NEGR1 Missense_Mutation p.K349N 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-FS-A1ZK-06 1 72241872 72241872 C T NEGR1 Missense_Mutation p.R173Q 0.53 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZK-06 1 75036964 75036964 C T C1orf173 Missense_Mutation p.G1477E 0.44 tolerated(0.49) benign(0.024) TCGA-FS-A1ZK-06 1 7724259 7724259 C T CAMTA1 Missense_Mutation p.S551F 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.723) TCGA-FS-A1ZK-06 1 8424199 8424199 G A RERE Missense_Mutation p.P553S 0.27 probably_damaging(0.99) TCGA-FS-A1ZK-06 1 8568705 8568705 C T RERE Missense_Mutation p.R287H 0.19 probably_damaging(0.998) TCGA-FS-A1ZK-06 1 89582871 89582871 G A GBP2 Silent p.I224I 0.40 TCGA-FS-A1ZK-06 1 89730416 89730416 T A GBP5 Nonsense_Mutation p.K368* 0.51 TCGA-FS-A1ZK-06 1 90398924 90398924 C T LRRC8D Silent p.S99S 0.50 TCGA-FS-A1ZK-06 1 92195499 92195499 C A TGFBR3 Silent p.G200G 0.29 TCGA-FS-A1ZK-06 1 95538372 95538372 G A ALG14 Missense_Mutation p.S28F 0.49 tolerated(0.09) benign(0.071) TCGA-FS-A1ZK-06 1 97217021 97217021 G T PTBP2 Missense_Mutation p.S27I 0.46 deleterious(0.02) benign(0.055) TCGA-FS-A1ZK-06 1 9770521 9770526 CTGGGG - PIK3CD In_Frame_Del p.P3_V5delinsL 0.14 TCGA-FS-A1ZK-06 1 97981388 97981388 G A DPYD Missense_Mutation p.P545L 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 1 99771774 99771774 G A LPPR4 Silent p.Q500Q 0.40 TCGA-FS-A1ZK-06 20 10030785 10030785 A T ANKEF1 Missense_Mutation p.N523I 0.25 tolerated(0.07) benign(0.072) TCGA-FS-A1ZK-06 20 10629213 10629213 G A JAG1 Missense_Mutation p.S518F 0.21 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZK-06 20 13850798 13850798 C T SEL1L2 Missense_Mutation p.G386R 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 20 14306424 14306424 C T FLRT3 Missense_Mutation p.E577K 0.22 deleterious(0) possibly_damaging(0.905) TCGA-FS-A1ZK-06 20 15967391 15967391 G A MACROD2 Silent p.T335T 0.14 TCGA-FS-A1ZK-06 20 18794854 18794854 G A SCP2D1 Missense_Mutation p.G132E 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 20 1960799 1960799 G A PDYN 3'UTR 0.19 TCGA-FS-A1ZK-06 20 19956093 19956093 C T RIN2 Missense_Mutation p.P524L 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZK-06 20 20144803 20144803 C T C20orf26 Missense_Mutation p.P379L 0.18 deleterious(0.03) probably_damaging(0.992) TCGA-FS-A1ZK-06 20 20585984 20585984 C T RALGAPA2 Missense_Mutation p.G625S 0.15 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 20 21492893 21492893 G A NKX2-2 Missense_Mutation p.L164F 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A1ZK-06 20 21689305 21689305 A G PAX1 Silent p.K342K 0.17 TCGA-FS-A1ZK-06 20 23549030 23549030 C T CST9L Missense_Mutation p.G20S 0.28 tolerated(0.21) probably_damaging(0.982) TCGA-FS-A1ZK-06 20 23614490 23614490 G A CST3 Intron 0.18 TCGA-FS-A1ZK-06 20 2442428 2442428 G A SNRPB Missense_Mutation p.P233S 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A1ZK-06 20 25203577 25203577 C T ENTPD6 Silent p.S383S 0.20 TCGA-FS-A1ZK-06 20 29845498 29845498 G A DEFB115 Missense_Mutation p.G11E 0.25 deleterious_low_confidence(0) benign(0.23) TCGA-FS-A1ZK-06 20 3005267 3005267 G A PTPRA Silent p.K538K 0.32 TCGA-FS-A1ZK-06 20 30253693 30253693 G A BCL2L1 3'UTR 0.14 TCGA-FS-A1ZK-06 20 30309749 30309749 C T BCL2L1 Silent p.R91R 0.23 TCGA-FS-A1ZK-06 20 30747839 30747839 C T TM9SF4 Silent p.F538F 0.27 TCGA-FS-A1ZK-06 20 3127866 3127866 C T FASTKD5 Silent p.R617R 0.21 TCGA-FS-A1ZK-06 20 31583448 31583448 C T SUN5 Missense_Mutation p.E171K 0.23 tolerated(0.21) benign(0.01) TCGA-FS-A1ZK-06 20 31606475 31606475 C T BPIFB2 Silent p.I234I 0.20 TCGA-FS-A1ZK-06 20 31671494 31671494 G A BPIFB4 Missense_Mutation p.G164E 0.24 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-FS-A1ZK-06 20 33345249 33345249 G A NCOA6 Silent p.S434S 0.18 TCGA-FS-A1ZK-06 20 33345250 33345250 G A NCOA6 Missense_Mutation p.S434F 0.19 probably_damaging(0.996) TCGA-FS-A1ZK-06 20 33462924 33462924 C T ACSS2 5'Flank 0.21 TCGA-FS-A1ZK-06 20 33519905 33519905 G A GSS Missense_Mutation p.S289L 0.20 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 20 33725685 33725685 G A EDEM2 Missense_Mutation p.P163L 0.24 deleterious(0) possibly_damaging(0.893) TCGA-FS-A1ZK-06 20 33842507 33842507 C T MMP24 Missense_Mutation p.T256I 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 20 34021839 34021839 G A GDF5 Silent p.P458P 0.21 TCGA-FS-A1ZK-06 20 34055193 34055193 C A CEP250 Missense_Mutation p.R222S 0.25 possibly_damaging(0.888) TCGA-FS-A1ZK-06 20 35060160 35060160 G A DLGAP4 Missense_Mutation p.D14N 0.20 tolerated(0.09) possibly_damaging(0.711) TCGA-FS-A1ZK-06 20 35242336 35242336 C T SLA2 Missense_Mutation p.G240D 0.24 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 20 36640943 36640943 G A TTI1 Nonsense_Mutation p.Q426* 0.18 TCGA-FS-A1ZK-06 20 3678675 3678675 G A SIGLEC1 Missense_Mutation p.P631L 0.29 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 20 3682099 3682099 G A SIGLEC1 Missense_Mutation p.S473F 0.21 tolerated(0.14) benign(0.17) TCGA-FS-A1ZK-06 20 3687199 3687199 C T SIGLEC1 Silent p.Q68Q 0.18 TCGA-FS-A1ZK-06 20 3687267 3687267 G A SIGLEC1 Missense_Mutation p.P46S 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 20 36932652 36932652 G A BPI Silent p.P13P 0.16 TCGA-FS-A1ZK-06 20 37400291 37400291 C T ACTR5 Silent p.I552I 0.11 TCGA-FS-A1ZK-06 20 3846674 3846674 C T MAVS Silent p.F501F 0.22 TCGA-FS-A1ZK-06 20 39830930 39830930 G A ZHX3 Missense_Mutation p.S876F 0.26 tolerated(0.25) possibly_damaging(0.555) TCGA-FS-A1ZK-06 20 40054786 40054786 G A CHD6 Missense_Mutation p.S1359F 0.27 tolerated(0.05) benign(0.024) TCGA-FS-A1ZK-06 20 40770640 40770640 G A PTPRT Silent p.A895A 0.32 TCGA-FS-A1ZK-06 20 41306605 41306605 G A PTPRT Missense_Mutation p.P352S 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 20 42682973 42682973 G A TOX2 Missense_Mutation p.G229E 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 20 42744361 42744361 T C JPH2 Missense_Mutation p.K652E 0.18 tolerated(0.28) benign(0.14) TCGA-FS-A1ZK-06 20 44672558 44672558 C T SLC12A5 Silent p.V483V 0.26 TCGA-FS-A1ZK-06 20 44676132 44676132 C T SLC12A5 Silent p.L632L 0.31 TCGA-FS-A1ZK-06 20 44750951 44750951 C T CD40 Silent p.T70T 0.26 TCGA-FS-A1ZK-06 20 44999142 44999142 G A ELMO2 Silent p.A608A 0.24 TCGA-FS-A1ZK-06 20 4705197 4705197 G A PRND 5'UTR 0.30 TCGA-FS-A1ZK-06 20 47267430 47267430 A C PREX1 Splice_Site p.X939_splice 0.38 TCGA-FS-A1ZK-06 20 47989747 47989747 G A KCNB1 Missense_Mutation p.P784S 0.28 tolerated_low_confidence(0.11) benign(0.076) TCGA-FS-A1ZK-06 20 47989959 47989959 A G KCNB1 Missense_Mutation p.L713P 0.29 tolerated_low_confidence(0.18) possibly_damaging(0.677) TCGA-FS-A1ZK-06 20 49576006 49576006 G A MOCS3 Silent p.E209E 0.24 TCGA-FS-A1ZK-06 20 49621209 49621209 C T KCNG1 Silent p.L303L 0.29 TCGA-FS-A1ZK-06 20 50226668 50226668 G A ATP9A Missense_Mutation p.P870S 0.22 tolerated(0.3) benign(0.001) TCGA-FS-A1ZK-06 20 52644840 52644840 C T BCAS1 Intron 0.28 TCGA-FS-A1ZK-06 20 5283349 5283349 C T PROKR2 Silent p.R164R 0.21 TCGA-FS-A1ZK-06 20 57769544 57769544 G A ZNF831 Missense_Mutation p.G1157E 0.24 tolerated(0.38) benign(0.002) TCGA-FS-A1ZK-06 20 57769762 57769762 G A ZNF831 Missense_Mutation p.G1230R 0.30 tolerated(0.19) benign(0.045) TCGA-FS-A1ZK-06 20 58330342 58330342 G A PHACTR3 Missense_Mutation p.G155E 0.27 tolerated(0.64) benign(0.038) TCGA-FS-A1ZK-06 20 5903511 5903511 G A CHGB Missense_Mutation p.E241K 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZK-06 20 60578892 60578892 G A TAF4 Missense_Mutation p.P756S 0.36 probably_damaging(0.986) TCGA-FS-A1ZK-06 20 60701364 60701364 C T LSM14B Missense_Mutation p.S99F 0.30 deleterious(0) probably_damaging(0.959) TCGA-FS-A1ZK-06 20 61444274 61444274 C A OGFR Missense_Mutation p.P436H 0.38 deleterious(0) probably_damaging(0.923) TCGA-FS-A1ZK-06 20 62195450 62195450 G C HELZ2 Silent p.P1575P 0.19 TCGA-FS-A1ZK-06 20 62195558 62195558 G A HELZ2 Silent p.F1539F 0.30 TCGA-FS-A1ZK-06 20 62200328 62200328 G A HELZ2 Silent p.F371F 0.21 TCGA-FS-A1ZK-06 20 62560684 62560684 C T DNAJC5 Missense_Mutation p.H43Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 20 76862 76862 C T DEFB125 Missense_Mutation p.P92L 0.16 deleterious(0) possibly_damaging(0.908) TCGA-FS-A1ZK-06 20 8678295 8678295 C T PLCB1 Silent p.S344S 0.20 TCGA-FS-A1ZK-06 20 8696882 8696882 T C PLCB1 Intron 0.24 TCGA-FS-A1ZK-06 21 16337281 16337281 G A NRIP1 Missense_Mutation p.S1078F 0.20 deleterious(0.01) possibly_damaging(0.746) TCGA-FS-A1ZK-06 21 19629303 19629303 G A CHODL Missense_Mutation p.E136K 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 21 27102074 27102074 G A ATP5J Missense_Mutation p.S19F 0.54 deleterious(0) possibly_damaging(0.724) TCGA-FS-A1ZK-06 21 28210437 28210437 C G ADAMTS1 Missense_Mutation p.E789Q 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 21 31913934 31913934 G A KRTAP19-6 3'UTR 0.24 TCGA-FS-A1ZK-06 21 32410611 32410611 G A KRTAP19-8 Missense_Mutation p.P51L 0.26 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZK-06 21 32554872 32554872 G A TIAM1 Missense_Mutation p.P918L 0.34 tolerated(0.13) benign(0.002) TCGA-FS-A1ZK-06 21 32639272 32639272 C T TIAM1 Missense_Mutation p.S6N 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 21 33887342 33887342 C T EVA1C Silent p.L390L 0.34 TCGA-FS-A1ZK-06 21 34011387 34011387 G T SYNJ1 Missense_Mutation p.P1288Q 0.25 tolerated_low_confidence(0.57) benign(0.006) TCGA-FS-A1ZK-06 21 34011388 34011388 G A SYNJ1 Missense_Mutation p.P1288S 0.23 tolerated_low_confidence(0.73) benign(0.023) TCGA-FS-A1ZK-06 21 34958419 34958419 C G DONSON Missense_Mutation p.W157C 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 21 37417917 37417917 G A SETD4 Missense_Mutation p.P230L 0.18 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 21 37417918 37417918 G A SETD4 Missense_Mutation p.P230S 0.21 tolerated(0.08) probably_damaging(0.989) TCGA-FS-A1ZK-06 21 38512909 38512909 C T TTC3 Missense_Mutation p.P570S 0.41 tolerated(0.11) benign(0.089) TCGA-FS-A1ZK-06 21 42767611 42767611 G A MX2 Missense_Mutation p.M323I 0.40 deleterious(0.03) benign(0.248) TCGA-FS-A1ZK-06 21 42778893 42778893 G A MX2 Missense_Mutation p.E625K 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZK-06 21 43504239 43504239 C T UMODL1 Missense_Mutation p.P122L 0.48 deleterious(0) benign(0.02) TCGA-FS-A1ZK-06 21 43711712 43711712 C T ABCG1 Silent p.S545S 0.44 TCGA-FS-A1ZK-06 21 44174108 44174108 C T PDE9A Silent p.L248L 0.35 TCGA-FS-A1ZK-06 21 45094543 45094543 C T RRP1B Silent p.S128S 0.41 TCGA-FS-A1ZK-06 21 45681098 45681098 C T DNMT3L Missense_Mutation p.M15I 0.34 tolerated(0.13) benign(0.046) TCGA-FS-A1ZK-06 21 45941911 45941911 G A TSPEAR Missense_Mutation p.S474F 0.43 deleterious(0.05) benign(0.434) TCGA-FS-A1ZK-06 21 45959332 45959332 G A KRTAP10-1 Silent p.L234L 0.49 TCGA-FS-A1ZK-06 21 46074232 46074232 G A KRTAP12-4 Silent p.V100V 0.37 TCGA-FS-A1ZK-06 21 46117527 46117527 C T KRTAP10-12 Silent p.C137C 0.44 TCGA-FS-A1ZK-06 21 46596181 46596181 C T ADARB1 Missense_Mutation p.P189S 0.36 tolerated(0.91) benign(0.002) TCGA-FS-A1ZK-06 21 47419593 47419593 C T COL6A1 Missense_Mutation p.P588L 0.32 tolerated(0.07) probably_damaging(0.995) TCGA-FS-A1ZK-06 21 47551942 47551942 G A COL6A2 Missense_Mutation p.E846K 0.55 tolerated(0.7) probably_damaging(0.975) TCGA-FS-A1ZK-06 21 47864622 47864622 A G PCNT Silent p.P3285P 0.37 TCGA-FS-A1ZK-06 22 16267070 16267070 C T POTEH Missense_Mutation p.G460E 0.10 tolerated(0.11) benign(0.008) TCGA-FS-A1ZK-06 22 16267071 16267071 C T POTEH Missense_Mutation p.G460R 0.09 tolerated(0.25) benign(0.066) TCGA-FS-A1ZK-06 22 18568002 18568002 C T PEX26 Silent p.L264L 0.22 TCGA-FS-A1ZK-06 22 19384456 19384456 G A HIRA Silent p.L170L 0.18 TCGA-FS-A1ZK-06 22 20130629 20130629 C T ZDHHC8 Silent p.A492A 0.38 TCGA-FS-A1ZK-06 22 20760971 20760971 C T ZNF74 Missense_Mutation p.H550Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 22 20812259 20812259 G A KLHL22 Nonsense_Mutation p.Q381* 0.28 TCGA-FS-A1ZK-06 22 21988757 21988757 C G CCDC116 Missense_Mutation p.S173R 0.29 tolerated(0.1) benign(0.038) TCGA-FS-A1ZK-06 22 22312879 22312879 G A TOP3B Nonsense_Mutation p.R698* 0.13 TCGA-FS-A1ZK-06 22 23165548 23165548 C T IGLV2-8 Missense_Mutation p.S40F 0.21 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FS-A1ZK-06 22 24622695 24622695 C T GGT5 Silent p.G314G 0.33 TCGA-FS-A1ZK-06 22 24658524 24658524 C T POM121L9P RNA 0.31 TCGA-FS-A1ZK-06 22 24720332 24720332 G A SPECC1L Missense_Mutation p.D695N 0.55 deleterious(0) probably_damaging(0.974) TCGA-FS-A1ZK-06 22 26224752 26224752 C T MYO18B Silent p.S932S 0.47 TCGA-FS-A1ZK-06 22 26228894 26228894 C T MYO18B Missense_Mutation p.P997L 0.52 tolerated(0.11) benign(0.02) TCGA-FS-A1ZK-06 22 26242163 26242163 G A MYO18B Silent p.Q1155Q 0.37 TCGA-FS-A1ZK-06 22 26242247 26242247 G A MYO18B Silent p.Q1183Q 0.37 TCGA-FS-A1ZK-06 22 26423583 26423583 C A MYO18B Missense_Mutation p.P2548Q 0.83 tolerated(0.09) benign(0.068) TCGA-FS-A1ZK-06 22 27024309 27024309 G A CRYBA4 Missense_Mutation p.G120R 0.39 tolerated(0.35) probably_damaging(0.999) TCGA-FS-A1ZK-06 22 27026391 27026391 G A CRYBA4 Silent p.R177R 0.34 TCGA-FS-A1ZK-06 22 29656198 29656198 G A RHBDD3 Missense_Mutation p.P338S 0.31 tolerated(0.14) benign(0.266) TCGA-FS-A1ZK-06 22 29708302 29708302 C T GAS2L1 3'Flank 0.56 TCGA-FS-A1ZK-06 22 30766447 30766447 C T CCDC157 Nonsense_Mutation p.Q185* 0.78 TCGA-FS-A1ZK-06 22 31662023 31662023 C T LIMK2 Missense_Mutation p.R295C 0.49 deleterious(0.02) benign(0.246) TCGA-FS-A1ZK-06 22 32211046 32211046 C T DEPDC5 Missense_Mutation p.S505F 0.23 deleterious(0.01) possibly_damaging(0.736) TCGA-FS-A1ZK-06 22 32853350 32853350 G A BPIFC Silent p.V8V 0.39 TCGA-FS-A1ZK-06 22 33673211 33673211 G A LARGE Silent p.P636P 0.10 TCGA-FS-A1ZK-06 22 35661516 35661516 C T HMGXB4 Missense_Mutation p.P379S 0.23 tolerated_low_confidence(0.16) benign(0.073) TCGA-FS-A1ZK-06 22 35947656 35947656 G A RASD2 Silent p.K126K 0.12 TCGA-FS-A1ZK-06 22 38131177 38131177 G A TRIOBP Missense_Mutation p.E1612K 0.87 deleterious_low_confidence(0.01) benign(0.395) TCGA-FS-A1ZK-06 22 38150944 38150944 C T TRIOBP Silent p.L1814L 0.09 TCGA-FS-A1ZK-06 22 39218622 39218622 T G NPTXR Missense_Mutation p.K499Q 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.732) TCGA-FS-A1ZK-06 22 40161379 40161379 G A ENTHD1 Silent p.F356F 0.47 TCGA-FS-A1ZK-06 22 40365475 40365475 G C GRAP2 Missense_Mutation p.E251Q 0.28 tolerated(0.46) benign(0.005) TCGA-FS-A1ZK-06 22 40718959 40718959 C T TNRC6B Missense_Mutation p.P1739L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 22 41368588 41368588 T G RBX1 3'UTR 0.39 TCGA-FS-A1ZK-06 22 41573345 41573345 C T EP300 Missense_Mutation p.P1877L 0.10 possibly_damaging(0.666) TCGA-FS-A1ZK-06 22 41575002 41575002 C T EP300 3'UTR 0.58 TCGA-FS-A1ZK-06 22 41648895 41648895 G A RANGAP1 Missense_Mutation p.S454F 0.26 deleterious(0.01) probably_damaging(0.919) TCGA-FS-A1ZK-06 22 41721580 41721580 C T ZC3H7B Silent p.P22P 0.10 TCGA-FS-A1ZK-06 22 41735933 41735933 C T ZC3H7B Silent p.I310I 0.23 TCGA-FS-A1ZK-06 22 42099376 42099376 C T MEI1 Silent p.A72A 0.27 TCGA-FS-A1ZK-06 22 44168800 44168800 C T EFCAB6 Missense_Mutation p.R108Q 0.50 tolerated(0.21) possibly_damaging(0.656) TCGA-FS-A1ZK-06 22 46318890 46318890 G A WNT7B Missense_Mutation p.P299L 0.69 tolerated(0.37) benign(0.004) TCGA-FS-A1ZK-06 22 50216722 50216722 C T BRD1 Missense_Mutation p.S415N 0.22 tolerated(0.19) benign(0.002) TCGA-FS-A1ZK-06 22 50470225 50470225 G A TTLL8 Missense_Mutation p.P549S 0.10 deleterious(0.01) probably_damaging(0.938) TCGA-FS-A1ZK-06 22 50580509 50580509 G A MOV10L1 Splice_Site p.X691_splice 0.57 TCGA-FS-A1ZK-06 22 50580554 50580554 G A MOV10L1 Silent p.E705E 0.59 TCGA-FS-A1ZK-06 22 50987593 50987593 G A KLHDC7B Missense_Mutation p.R333Q 0.22 tolerated(0.08) benign(0.034) TCGA-FS-A1ZK-06 2 100167981 100167981 G A AFF3 Silent p.S1237S 0.37 TCGA-FS-A1ZK-06 2 100167982 100167982 G A AFF3 Missense_Mutation p.S1237F 0.37 deleterious(0) possibly_damaging(0.477) TCGA-FS-A1ZK-06 2 101670590 101670590 G A TBC1D8 Missense_Mutation p.S189F 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 2 102477313 102477313 C T MAP4K4 Silent p.N577N 0.64 TCGA-FS-A1ZK-06 2 102793021 102793021 A T IL1R1 Missense_Mutation p.K504N 0.50 deleterious(0) probably_damaging(0.942) TCGA-FS-A1ZK-06 2 103311508 103311508 G A SLC9A2 Missense_Mutation p.D508N 0.39 deleterious(0) possibly_damaging(0.678) TCGA-FS-A1ZK-06 2 103324959 103324959 G A SLC9A2 3'UTR 0.53 TCGA-FS-A1ZK-06 2 105883951 105883951 G A TGFBRAP1 Silent p.P824P 0.41 TCGA-FS-A1ZK-06 2 105924152 105924152 G A TGFBRAP1 Missense_Mutation p.P203S 0.43 tolerated(0.21) probably_damaging(0.934) TCGA-FS-A1ZK-06 2 108488640 108488640 C T RGPD4 Missense_Mutation p.R1394C 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 2 109383770 109383770 C T RANBP2 Missense_Mutation p.R2259C 0.41 tolerated(0.05) probably_damaging(0.991) TCGA-FS-A1ZK-06 2 113315512 113315512 C T POLR1B Missense_Mutation p.S395F 0.40 deleterious(0) possibly_damaging(0.61) TCGA-FS-A1ZK-06 2 113670672 113670672 G A IL37 Splice_Site p.X28_splice 0.08 TCGA-FS-A1ZK-06 2 113786623 113786623 C T IL36B Missense_Mutation p.E52K 0.42 deleterious_low_confidence(0.03) benign(0.19) TCGA-FS-A1ZK-06 2 115200327 115200327 G A DPP10 5'UTR 0.33 TCGA-FS-A1ZK-06 2 119732008 119732008 G A MARCO Missense_Mutation p.G187E 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 2 121708851 121708851 C T GLI2 Missense_Mutation p.S96F 0.35 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 2 121736031 121736031 C T GLI2 Missense_Mutation p.H464Y 0.36 deleterious(0) probably_damaging(0.935) TCGA-FS-A1ZK-06 2 130832852 130832852 G A POTEF Silent p.F731F 0.34 TCGA-FS-A1ZK-06 2 131103620 131103620 C T IMP4 Silent p.P208P 0.37 TCGA-FS-A1ZK-06 2 131487717 131487717 C T GPR148 Silent p.V331V 0.33 TCGA-FS-A1ZK-06 2 131487718 131487718 C T GPR148 Missense_Mutation p.R332W 0.33 tolerated(0.09) benign(0) TCGA-FS-A1ZK-06 2 133542791 133542791 C T NCKAP5 Silent p.K531K 0.46 TCGA-FS-A1ZK-06 2 141092073 141092073 C T LRP1B Missense_Mutation p.D4058N 0.33 possibly_damaging(0.822) TCGA-FS-A1ZK-06 2 141607881 141607881 G A LRP1B Missense_Mutation p.L1577F 0.48 possibly_damaging(0.587) TCGA-FS-A1ZK-06 2 149226560 149226560 C T MBD5 Missense_Mutation p.P350S 0.35 tolerated(0.05) possibly_damaging(0.803) TCGA-FS-A1ZK-06 2 152308153 152308153 A G RIF1 Missense_Mutation p.I760V 0.62 tolerated(0.52) benign(0.002) TCGA-FS-A1ZK-06 2 152342123 152342123 C T NEB 3'UTR 0.45 TCGA-FS-A1ZK-06 2 152497159 152497159 G A NEB Missense_Mutation p.R2799C 0.32 benign(0.015) TCGA-FS-A1ZK-06 2 152579941 152579941 G A NEB Silent p.S224S 0.25 TCGA-FS-A1ZK-06 2 157425455 157425455 C T GPD2 Silent p.G428G 0.42 TCGA-FS-A1ZK-06 2 160664965 160664965 G A LY75-CD302 Missense_Mutation p.S1606F 0.47 tolerated(0.09) probably_damaging(0.919) TCGA-FS-A1ZK-06 2 160667116 160667116 G A LY75-CD302 Silent p.I1540I 0.42 TCGA-FS-A1ZK-06 2 160692099 160692099 C T LY75-CD302 Missense_Mutation p.E1189K 0.34 tolerated(0.2) probably_damaging(0.953) TCGA-FS-A1ZK-06 2 160833917 160833917 G A PLA2R1 Missense_Mutation p.S760L 0.34 deleterious(0) probably_damaging(0.934) TCGA-FS-A1ZK-06 2 163134116 163134116 C T IFIH1 Missense_Mutation p.R618Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 2 1653160 1653160 C T PXDN Missense_Mutation p.V798M 0.22 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 2 166848354 166848354 C T SCN1A Missense_Mutation p.V1811I 0.39 tolerated(0.57) probably_damaging(0.997) TCGA-FS-A1ZK-06 2 166893031 166893031 G A SCN1A Missense_Mutation p.L986F 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 2 167142945 167142945 C T SCN9A Silent p.S501S 0.51 TCGA-FS-A1ZK-06 2 167162316 167162316 G A SCN9A Silent p.V194V 0.38 TCGA-FS-A1ZK-06 2 16740731 16740731 G A FAM49A Silent p.I278I 0.30 TCGA-FS-A1ZK-06 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.41 probably_damaging(0.999) TCGA-FS-A1ZK-06 2 168105581 168105581 A T XIRP2 Missense_Mutation p.K2560I 0.50 probably_damaging(0.961) TCGA-FS-A1ZK-06 2 169825893 169825893 C T ABCB11 Missense_Mutation p.G660R 0.24 tolerated(0.05) benign(0.016) TCGA-FS-A1ZK-06 2 172563854 172563854 G A DYNC1I2 Missense_Mutation p.S101N 0.36 tolerated(0.17) probably_damaging(0.979) TCGA-FS-A1ZK-06 2 175333751 175333751 G A GPR155 Silent p.I357I 0.44 TCGA-FS-A1ZK-06 2 179399168 179399168 C T TTN Silent p.R34058R 0.41 TCGA-FS-A1ZK-06 2 179413030 179413030 A T TTN Missense_Mutation p.I31108N 0.53 TCGA-FS-A1ZK-06 2 179448460 179448460 C G TTN Missense_Mutation p.E21817Q 0.53 TCGA-FS-A1ZK-06 2 179477031 179477031 C T TTN Missense_Mutation p.D16741N 0.42 TCGA-FS-A1ZK-06 2 179501143 179501143 C T TTN Missense_Mutation p.A13771T 0.42 TCGA-FS-A1ZK-06 2 179501144 179501144 C T TTN Silent p.T13770T 0.41 TCGA-FS-A1ZK-06 2 179595861 179595861 A C TTN Missense_Mutation p.V5844G 0.39 TCGA-FS-A1ZK-06 2 179606494 179606494 G A TTN Silent p.F3822F 0.53 TCGA-FS-A1ZK-06 2 179649020 179649020 G A TTN Missense_Mutation p.S851F 0.32 TCGA-FS-A1ZK-06 2 18768804 18768804 C T NT5C1B Missense_Mutation p.E29K 0.28 tolerated_low_confidence(0.08) benign(0.08) TCGA-FS-A1ZK-06 2 189875061 189875061 G A COL3A1 Nonsense_Mutation p.W1327* 0.52 TCGA-FS-A1ZK-06 2 190322059 190322059 G A WDR75 Missense_Mutation p.R174Q 0.52 deleterious(0.05) possibly_damaging(0.489) TCGA-FS-A1ZK-06 2 190593472 190593472 C T ANKAR Missense_Mutation p.R1040C 0.46 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZK-06 2 19553163 19553163 C T OSR1 Missense_Mutation p.G135D 0.25 tolerated(0.24) benign(0.016) TCGA-FS-A1ZK-06 2 196619129 196619129 G A DNAH7 Missense_Mutation p.P3899L 0.43 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZK-06 2 196765209 196765209 G A DNAH7 Missense_Mutation p.R1449W 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 2 198353733 198353733 A C HSPD1 Missense_Mutation p.V403G 0.32 deleterious(0.02) benign(0.285) TCGA-FS-A1ZK-06 2 198949641 198949641 C T PLCL1 Missense_Mutation p.S467F 0.40 deleterious(0.04) possibly_damaging(0.56) TCGA-FS-A1ZK-06 2 202003489 202003489 C T CFLAR Intron 0.50 TCGA-FS-A1ZK-06 2 203622041 203622041 A C FAM117B Missense_Mutation p.S404R 0.39 deleterious(0.02) possibly_damaging(0.563) TCGA-FS-A1ZK-06 2 207041817 207041817 C T GPR1 Missense_Mutation p.G52E 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 2 207945930 207945930 C T KLF7 3'UTR 0.43 TCGA-FS-A1ZK-06 2 21224983 21224983 T G APOB Silent p.S4437S 0.32 TCGA-FS-A1ZK-06 2 212483927 212483927 G A ERBB4 Missense_Mutation p.P759L 0.45 deleterious(0.03) possibly_damaging(0.483) TCGA-FS-A1ZK-06 2 215278865 215278865 G A VWC2L 5'UTR 0.57 TCGA-FS-A1ZK-06 2 215820071 215820071 G A ABCA12 Missense_Mutation p.S2083F 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZK-06 2 218712399 218712399 G A TNS1 Silent p.F822F 0.41 TCGA-FS-A1ZK-06 2 219029795 219029795 G A CXCR1 Missense_Mutation p.A47V 0.38 tolerated(0.67) benign(0.008) TCGA-FS-A1ZK-06 2 219204778 219204778 C T PNKD Missense_Mutation p.L127F 0.52 deleterious(0.04) probably_damaging(0.989) TCGA-FS-A1ZK-06 2 220038093 220038093 G A CNPPD1 Silent p.S223S 0.39 TCGA-FS-A1ZK-06 2 220285356 220285356 C T DES Missense_Mutation p.A292V 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-FS-A1ZK-06 2 220476456 220476456 C T STK11IP Silent p.V756V 0.41 TCGA-FS-A1ZK-06 2 223339404 223339404 A T SGPP2 Missense_Mutation p.I113F 0.38 deleterious(0.03) benign(0.03) TCGA-FS-A1ZK-06 2 223386515 223386515 G A SGPP2 Silent p.K136K 0.32 TCGA-FS-A1ZK-06 2 224822124 224822124 G A MRPL44 5'UTR 0.29 TCGA-FS-A1ZK-06 2 226446676 226446676 C T NYAP2 Silent p.P181P 0.41 TCGA-FS-A1ZK-06 2 227922200 227922200 C T COL4A4 Missense_Mutation p.G834R 0.64 unknown(0) TCGA-FS-A1ZK-06 2 228882638 228882638 A C SPHKAP Missense_Mutation p.S978A 0.63 tolerated(0.14) benign(0.016) TCGA-FS-A1ZK-06 2 228884064 228884064 A G SPHKAP Silent p.C502C 0.47 TCGA-FS-A1ZK-06 2 230253045 230253045 C T DNER Silent p.L597L 0.38 TCGA-FS-A1ZK-06 2 230453181 230453181 C T DNER Silent p.G203G 0.28 TCGA-FS-A1ZK-06 2 231380341 231380341 G A SP100 Intron 0.57 TCGA-FS-A1ZK-06 2 232393698 232393698 G A NMUR1 Missense_Mutation p.P12S 0.39 tolerated_low_confidence(0.09) benign(0.066) TCGA-FS-A1ZK-06 2 233321866 233321866 C T ALPI Missense_Mutation p.S161L 0.59 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 2 233350918 233350918 G A ECEL1 Missense_Mutation p.T149I 0.39 tolerated(0.31) benign(0.003) TCGA-FS-A1ZK-06 2 233721532 233721532 C T GIGYF2 Missense_Mutation p.L1309F 0.37 unknown(0) TCGA-FS-A1ZK-06 2 234355402 234355402 C T DGKD Missense_Mutation p.S460F 0.44 tolerated(0.09) possibly_damaging(0.726) TCGA-FS-A1ZK-06 2 234622455 234622455 T C UGT1A5 Missense_Mutation p.M273T 0.29 tolerated(0.09) possibly_damaging(0.513) TCGA-FS-A1ZK-06 2 234628284 234628284 T C UGT1A4 Missense_Mutation p.M273T 0.10 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A1ZK-06 2 238296801 238296801 G A COL6A3 Missense_Mutation p.L246F 0.37 probably_damaging(1) TCGA-FS-A1ZK-06 2 23985211 23985211 A T ATAD2B Missense_Mutation p.S1088T 0.23 tolerated(0.09) benign(0.009) TCGA-FS-A1ZK-06 2 241459909 241459909 C T ANKMY1 Missense_Mutation p.R536Q 0.50 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZK-06 2 241463561 241463561 G A ANKMY1 Missense_Mutation p.P436S 0.55 tolerated(0.48) benign(0.004) TCGA-FS-A1ZK-06 2 241494370 241494370 C A ANKMY1 5'UTR 0.44 TCGA-FS-A1ZK-06 2 242149015 242149015 C T ANO7 Missense_Mutation p.R496C 0.28 deleterious(0) possibly_damaging(0.55) TCGA-FS-A1ZK-06 2 26672939 26672939 G A DRC1 Missense_Mutation p.D529N 0.71 deleterious(0.02) probably_damaging(0.982) TCGA-FS-A1ZK-06 2 26806696 26806696 A C CIB4 Missense_Mutation p.D133E 0.20 tolerated(0.62) benign(0.002) TCGA-FS-A1ZK-06 2 27800886 27800886 G A C2orf16 Missense_Mutation p.D483N 0.26 tolerated(0.18) benign(0.019) TCGA-FS-A1ZK-06 2 29221100 29221100 C T FAM179A Silent p.S40S 0.14 TCGA-FS-A1ZK-06 2 29917849 29917849 C T ALK Silent p.E273E 0.23 TCGA-FS-A1ZK-06 2 30987150 30987150 G A CAPN13 Silent p.L183L 0.21 TCGA-FS-A1ZK-06 2 39993221 39993221 G A THUMPD2 Missense_Mutation p.S260F 0.25 deleterious(0.03) benign(0.202) TCGA-FS-A1ZK-06 2 42531667 42531667 T G EML4 Missense_Mutation p.V648G 0.53 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZK-06 2 43520266 43520266 C T THADA Missense_Mutation p.V1509M 0.27 deleterious(0.01) possibly_damaging(0.627) TCGA-FS-A1ZK-06 2 43919740 43919740 G A PLEKHH2 Missense_Mutation p.E92K 0.27 tolerated(0.66) benign(0.313) TCGA-FS-A1ZK-06 2 43927012 43927012 C T PLEKHH2 Silent p.T305T 0.29 TCGA-FS-A1ZK-06 2 43937379 43937379 T G PLEKHH2 Silent p.G708G 0.33 TCGA-FS-A1ZK-06 2 48915873 48915873 C T LHCGR Missense_Mutation p.D355N 0.30 deleterious(0) probably_damaging(0.927) TCGA-FS-A1ZK-06 2 50148959 50148959 C T NRXN1 3'UTR 0.40 TCGA-FS-A1ZK-06 2 50464101 50464101 C T NRXN1 Silent p.T1164T 0.30 TCGA-FS-A1ZK-06 2 54858354 54858354 C T SPTBN1 Missense_Mutation p.S1057F 0.28 deleterious(0) benign(0.378) TCGA-FS-A1ZK-06 2 54872557 54872557 C T SPTBN1 Silent p.I1487I 0.26 TCGA-FS-A1ZK-06 2 55200750 55200750 A T RTN4 Missense_Mutation p.I1162K 0.57 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 2 62067438 62067438 G A FAM161A Missense_Mutation p.P234L 0.24 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZK-06 2 69174314 69174314 G A GKN2 Silent p.L94L 0.20 TCGA-FS-A1ZK-06 2 69397402 69397402 C T ANTXR1 Missense_Mutation p.P357L 0.23 deleterious(0) possibly_damaging(0.676) TCGA-FS-A1ZK-06 2 69397403 69397403 C T ANTXR1 Silent p.P357P 0.23 TCGA-FS-A1ZK-06 2 69420468 69420468 G A ANTXR1 Missense_Mutation p.G452E 0.23 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZK-06 2 71061149 71061149 G A CD207 Missense_Mutation p.P65S 0.33 tolerated(0.2) benign(0.043) TCGA-FS-A1ZK-06 2 72786608 72786608 G A EXOC6B Nonsense_Mutation p.R297* 0.17 TCGA-FS-A1ZK-06 2 74317148 74317148 C T TET3 Missense_Mutation p.R870C 0.24 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 2 74787386 74787386 G A M1AP Silent p.T438T 0.64 TCGA-FS-A1ZK-06 2 79363152 79363152 C T REG1P RNA 0.22 TCGA-FS-A1ZK-06 2 80529507 80529518 TCTGATGCATGG - LRRTM1 In_Frame_Del p.T476_Q479del 0.50 TCGA-FS-A1ZK-06 2 80529698 80529698 C T LRRTM1 Missense_Mutation p.G416D 0.24 tolerated(0.62) benign(0.025) TCGA-FS-A1ZK-06 2 80530636 80530636 G A LRRTM1 Silent p.S103S 0.30 TCGA-FS-A1ZK-06 2 85824049 85824049 A C RNF181 Missense_Mutation p.S108R 0.32 tolerated(0.26) benign(0.012) TCGA-FS-A1ZK-06 2 85824050 85824050 G A RNF181 Missense_Mutation p.S108N 0.30 tolerated(0.42) benign(0.005) TCGA-FS-A1ZK-06 2 86439640 86439640 T C MRPL35 3'UTR 0.27 TCGA-FS-A1ZK-06 2 87042831 87042831 C T CD8B Missense_Mutation p.E211K 0.33 tolerated_low_confidence(0.54) possibly_damaging(0.486) TCGA-FS-A1ZK-06 2 89247291 89247291 C T IGKV1-5 Missense_Mutation p.D2N 0.29 deleterious_low_confidence(0.04) benign(0.11) TCGA-FS-A1ZK-06 2 89619840 89619840 G A IGKV1-39 Silent p.P6P 0.16 TCGA-FS-A1ZK-06 2 95719229 95719229 C T MAL 3'UTR 0.40 TCGA-FS-A1ZK-06 2 96953256 96953256 G A SNRNP200 Silent p.L1135L 0.36 TCGA-FS-A1ZK-06 2 97400219 97400219 G A LMAN2L Silent p.I117I 0.41 TCGA-FS-A1ZK-06 2 99013380 99013380 G A CNGA3 Missense_Mutation p.D583N 0.34 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 2 99013680 99013680 C T CNGA3 Missense_Mutation p.P683S 0.28 tolerated(0.3) benign(0.002) TCGA-FS-A1ZK-06 3 100100601 100100601 C T TOMM70A Missense_Mutation p.E248K 0.26 tolerated(1) benign(0.005) TCGA-FS-A1ZK-06 3 100964675 100964675 C T IMPG2 Missense_Mutation p.R505K 0.28 tolerated(0.29) benign(0.205) TCGA-FS-A1ZK-06 3 107932859 107932859 G A IFT57 Silent p.Y168Y 0.21 TCGA-FS-A1ZK-06 3 108682428 108682428 C T MORC1 Missense_Mutation p.E878K 0.33 deleterious(0) possibly_damaging(0.906) TCGA-FS-A1ZK-06 3 108724109 108724109 T A MORC1 Missense_Mutation p.E607D 0.26 tolerated(0.12) benign(0.022) TCGA-FS-A1ZK-06 3 108725901 108725901 G A MORC1 Missense_Mutation p.S581F 0.32 deleterious(0.03) possibly_damaging(0.553) TCGA-FS-A1ZK-06 3 111632513 111632513 T G PHLDB2 Silent p.A561A 0.25 TCGA-FS-A1ZK-06 3 111918168 111918168 C T SLC9C1 Silent p.K841K 0.14 TCGA-FS-A1ZK-06 3 111997628 111997628 A T SLC9C1 Missense_Mutation p.F89Y 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 3 112545993 112545993 C A CD200R1L Nonsense_Mutation p.E176* 0.25 TCGA-FS-A1ZK-06 3 113002451 113002451 C T BOC Silent p.F875F 0.28 TCGA-FS-A1ZK-06 3 113890723 113890723 G A DRD3 Silent p.L39L 0.41 TCGA-FS-A1ZK-06 3 113955996 113955996 G A ZNF80 5'UTR 0.16 TCGA-FS-A1ZK-06 3 114035333 114035333 C T MIR568 RNA 0.27 TCGA-FS-A1ZK-06 3 115571453 115571453 C T LSAMP Missense_Mutation p.E176K 0.41 tolerated(0.54) possibly_damaging(0.777) TCGA-FS-A1ZK-06 3 118621455 118621455 G A IGSF11 Missense_Mutation p.S403F 0.26 deleterious(0) possibly_damaging(0.766) TCGA-FS-A1ZK-06 3 119121239 119121239 C T ARHGAP31 Missense_Mutation p.S547F 0.33 tolerated(0.05) benign(0.004) TCGA-FS-A1ZK-06 3 119328383 119328383 G A PLA1A Missense_Mutation p.M174I 0.25 tolerated(0.12) benign(0.008) TCGA-FS-A1ZK-06 3 120973808 120973808 G A STXBP5L Missense_Mutation p.G503E 0.21 tolerated(0.54) benign(0.236) TCGA-FS-A1ZK-06 3 121416026 121416026 A T GOLGB1 Nonsense_Mutation p.L1115* 0.30 TCGA-FS-A1ZK-06 3 121613338 121613338 G A SLC15A2 Silent p.Q5Q 0.29 TCGA-FS-A1ZK-06 3 121634077 121634077 G A SLC15A2 Missense_Mutation p.E178K 0.29 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 3 121720677 121720677 C T ILDR1 Nonsense_Mutation p.W138* 0.38 TCGA-FS-A1ZK-06 3 121740943 121740943 C T ILDR1 5'UTR 0.44 TCGA-FS-A1ZK-06 3 121973120 121973120 G C CASR Missense_Mutation p.K28N 0.32 deleterious(0.01) possibly_damaging(0.587) TCGA-FS-A1ZK-06 3 121976007 121976007 C T CASR Missense_Mutation p.P89S 0.24 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 3 12200399 12200399 G A TIMP4 5'UTR 0.40 TCGA-FS-A1ZK-06 3 123003528 123003528 C G ADCY5 Missense_Mutation p.R1238P 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 3 124418856 124418856 G A AC080008.1 5'Flank 0.28 TCGA-FS-A1ZK-06 3 126736441 126736441 C T PLXNA1 Silent p.P1150P 0.23 TCGA-FS-A1ZK-06 3 127399459 127399459 C T ABTB1 3'UTR 0.47 TCGA-FS-A1ZK-06 3 127642587 127642587 C T KBTBD12 Missense_Mutation p.S228F 0.30 deleterious(0.03) possibly_damaging(0.701) TCGA-FS-A1ZK-06 3 128126937 128126937 G A EEFSEC Silent p.K542K 0.30 TCGA-FS-A1ZK-06 3 128204626 128204626 C T GATA2 Missense_Mutation p.G272E 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-FS-A1ZK-06 3 128204627 128204627 C T GATA2 Missense_Mutation p.G272R 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZK-06 3 12858846 12858846 C T CAND2 Silent p.A805A 0.22 TCGA-FS-A1ZK-06 3 128706574 128706574 G A KIAA1257 Silent p.F184F 0.29 TCGA-FS-A1ZK-06 3 129810120 129810120 G A RP11-93K22.13 Intron 0.31 TCGA-FS-A1ZK-06 3 133661478 133661478 G A SLCO2A1 Silent p.S532S 0.31 TCGA-FS-A1ZK-06 3 134670723 134670723 G A EPHB1 Missense_Mutation p.G212R 0.30 tolerated(0.06) probably_damaging(0.995) TCGA-FS-A1ZK-06 3 137783575 137783575 C T DZIP1L Silent p.E679E 0.28 TCGA-FS-A1ZK-06 3 14744762 14744762 C T C3orf20 Missense_Mutation p.R291C 0.33 tolerated(0.06) benign(0.198) TCGA-FS-A1ZK-06 3 14745926 14745926 C T C3orf20 Missense_Mutation p.H321Y 0.29 deleterious(0.04) possibly_damaging(0.804) TCGA-FS-A1ZK-06 3 148744726 148744726 C G GYG1 3'UTR 0.17 TCGA-FS-A1ZK-06 3 14949198 14949198 G A FGD5 Missense_Mutation p.D1106N 0.28 tolerated(0.29) probably_damaging(0.993) TCGA-FS-A1ZK-06 3 14964650 14964650 A C FGD5 Missense_Mutation p.K1302T 0.28 deleterious(0.02) possibly_damaging(0.627) TCGA-FS-A1ZK-06 3 150264576 150264576 C T EIF2A 5'UTR 0.25 TCGA-FS-A1ZK-06 3 150645694 150645694 C T CLRN1 3'Flank 0.23 TCGA-FS-A1ZK-06 3 150911442 150911442 C T MED12L Missense_Mutation p.P712S 0.23 deleterious(0.01) benign(0.088) TCGA-FS-A1ZK-06 3 151155730 151155730 C T IGSF10 Missense_Mutation p.D2207N 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 3 151163111 151163111 G A IGSF10 Missense_Mutation p.P1553L 0.30 deleterious(0.03) benign(0.03) TCGA-FS-A1ZK-06 3 152554131 152554131 T A P2RY1 Missense_Mutation p.L187H 0.28 deleterious(0) probably_damaging(0.947) TCGA-FS-A1ZK-06 3 154055952 154055952 C T GPR149 Missense_Mutation p.E578K 0.31 tolerated(0.07) benign(0.055) TCGA-FS-A1ZK-06 3 158980415 158980415 C T IQCJ-SCHIP1 Silent p.S78S 0.33 TCGA-FS-A1ZK-06 3 16252704 16252704 C T GALNT15 Missense_Mutation p.L385F 0.27 tolerated(0.13) probably_damaging(0.92) TCGA-FS-A1ZK-06 3 164785275 164785275 G A SI Missense_Mutation p.T163I 0.22 deleterious(0.03) benign(0.038) TCGA-FS-A1ZK-06 3 164905757 164905757 G A SLITRK3 Silent p.L954L 0.26 TCGA-FS-A1ZK-06 3 167196724 167196724 C T WDR49 Missense_Mutation p.R679Q 0.25 tolerated(0.38) benign(0.015) TCGA-FS-A1ZK-06 3 169511529 169511529 G A LRRC34 Missense_Mutation p.S430F 0.31 tolerated(0.18) benign(0.139) TCGA-FS-A1ZK-06 3 169557848 169557848 A T LRRC31 Silent p.A527A 0.15 TCGA-FS-A1ZK-06 3 172224702 172224702 C T TNFSF10 Silent p.K142K 0.35 TCGA-FS-A1ZK-06 3 179095136 179095136 C T MFN1 Missense_Mutation p.S410L 0.25 deleterious(0) possibly_damaging(0.721) TCGA-FS-A1ZK-06 3 180372596 180372596 G A CCDC39 Missense_Mutation p.T295M 0.26 tolerated(0.14) benign(0.01) TCGA-FS-A1ZK-06 3 183273311 183273311 C T KLHL6 Missense_Mutation p.G44E 0.22 tolerated(0.4) benign(0.004) TCGA-FS-A1ZK-06 3 183368597 183368597 C T KLHL24 Silent p.L151L 0.25 TCGA-FS-A1ZK-06 3 183368598 183368598 C T KLHL24 Missense_Mutation p.R152C 0.25 tolerated(0.19) benign(0.175) TCGA-FS-A1ZK-06 3 183381293 183381293 G A KLHL24 Missense_Mutation p.R323Q 0.25 deleterious(0.05) benign(0.055) TCGA-FS-A1ZK-06 3 183756374 183756374 G A HTR3D Missense_Mutation p.G366E 0.23 tolerated(0.58) benign(0.163) TCGA-FS-A1ZK-06 3 183822694 183822694 C T HTR3E Missense_Mutation p.P196L 0.21 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 3 183822695 183822695 C T HTR3E Silent p.P196P 0.21 TCGA-FS-A1ZK-06 3 183961677 183961677 G A ALG3 Silent p.F278F 0.35 TCGA-FS-A1ZK-06 3 183995965 183995965 G A ECE2 Nonsense_Mutation p.W323* 0.17 TCGA-FS-A1ZK-06 3 184632795 184632795 C T VPS8 Missense_Mutation p.P739L 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-FS-A1ZK-06 3 184632796 184632796 C T VPS8 Silent p.P739P 0.19 TCGA-FS-A1ZK-06 3 185161269 185161269 C T MAP3K13 Silent p.I232I 0.27 TCGA-FS-A1ZK-06 3 185783621 185783621 C T ETV5 Silent p.R297R 0.31 TCGA-FS-A1ZK-06 3 186459557 186459557 G A KNG1 Missense_Mutation p.G458R 0.33 tolerated(0.4) benign(0.016) TCGA-FS-A1ZK-06 3 186792044 186792044 C T ST6GAL1 Missense_Mutation p.P301L 0.23 benign(0.012) TCGA-FS-A1ZK-06 3 187088772 187088772 C T RTP4 Silent p.L118L 0.20 TCGA-FS-A1ZK-06 3 187089093 187089093 C T RTP4 Missense_Mutation p.P225S 0.31 deleterious_low_confidence(0.02) benign(0.17) TCGA-FS-A1ZK-06 3 189455616 189455616 C T TP63 Silent p.L50L 0.27 TCGA-FS-A1ZK-06 3 192125915 192125915 G A FGF12 Missense_Mutation p.P33L 0.36 deleterious(0) possibly_damaging(0.483) TCGA-FS-A1ZK-06 3 193272612 193272612 C T ATP13A4 5'UTR 0.28 TCGA-FS-A1ZK-06 3 195517616 195517616 C T MUC4 Missense_Mutation p.E279K 0.25 unknown(0) TCGA-FS-A1ZK-06 3 195936327 195936327 G A ZDHHC19 Missense_Mutation p.R110C 0.17 deleterious(0.02) benign(0.189) TCGA-FS-A1ZK-06 3 196386840 196386840 G A NRROS Missense_Mutation p.S109N 0.44 tolerated(0.47) benign(0.023) TCGA-FS-A1ZK-06 3 19956846 19956846 C T EFHB Missense_Mutation p.G413R 0.29 deleterious(0.02) benign(0.009) TCGA-FS-A1ZK-06 3 2861197 2861197 G A CNTN4 Missense_Mutation p.R129K 0.25 deleterious(0) possibly_damaging(0.691) TCGA-FS-A1ZK-06 3 33038604 33038604 G A GLB1 Missense_Mutation p.P656L 0.30 deleterious(0.04) benign(0.003) TCGA-FS-A1ZK-06 3 33038605 33038605 G A GLB1 Missense_Mutation p.P656S 0.32 deleterious(0.02) benign(0.014) TCGA-FS-A1ZK-06 3 33893999 33893999 C T PDCD6IP Missense_Mutation p.S559F 0.24 deleterious(0.02) benign(0.066) TCGA-FS-A1ZK-06 3 361522 361522 C T CHL1 Silent p.F21F 0.34 TCGA-FS-A1ZK-06 3 36874255 36874255 G A TRANK1 Silent p.F2229F 0.33 TCGA-FS-A1ZK-06 3 36899148 36899148 G A TRANK1 Missense_Mutation p.P645S 0.25 tolerated(0.2) benign(0.01) TCGA-FS-A1ZK-06 3 38347571 38347571 G A SLC22A14 Silent p.R18R 0.27 TCGA-FS-A1ZK-06 3 38622667 38622667 G A SCN5A Missense_Mutation p.L995F 0.19 tolerated(0.08) benign(0.004) TCGA-FS-A1ZK-06 3 38622668 38622668 G A SCN5A Silent p.A994A 0.19 TCGA-FS-A1ZK-06 3 38674808 38674808 C T SCN5A 5'UTR 0.26 TCGA-FS-A1ZK-06 3 3887884 3887884 T C LRRN1 Missense_Mutation p.L520P 0.26 tolerated(0.26) possibly_damaging(0.65) TCGA-FS-A1ZK-06 3 38888977 38888977 G A SCN11A Silent p.I1528I 0.33 TCGA-FS-A1ZK-06 3 38889067 38889067 G A SCN11A Silent p.F1498F 0.28 TCGA-FS-A1ZK-06 3 39152380 39152380 G A TTC21A Missense_Mutation p.E103K 0.33 deleterious(0.01) benign(0.367) TCGA-FS-A1ZK-06 3 39227497 39227497 G A XIRP1 Missense_Mutation p.P1147L 0.30 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 3 39374818 39374818 G A CCR8 Silent p.R332R 0.23 TCGA-FS-A1ZK-06 3 40291796 40291796 G A MYRIP Silent p.R782R 0.35 TCGA-FS-A1ZK-06 3 42632305 42632305 G A SS18L2 5'UTR 0.34 TCGA-FS-A1ZK-06 3 42738627 42738627 G A HHATL Silent p.A292A 0.33 TCGA-FS-A1ZK-06 3 42906718 42906718 C T ACKR2 Missense_Mutation p.P242S 0.26 tolerated(0.17) benign(0.047) TCGA-FS-A1ZK-06 3 44434423 44434423 C T TCAIM Missense_Mutation p.R217C 0.25 deleterious(0.04) probably_damaging(0.984) TCGA-FS-A1ZK-06 3 44683587 44683587 A C ZNF197 Missense_Mutation p.K322T 0.34 tolerated(0.4) benign(0.002) TCGA-FS-A1ZK-06 3 45136996 45136996 G A CDCP1 Silent p.P363P 0.28 TCGA-FS-A1ZK-06 3 45943326 45943326 G A CCR9 Missense_Mutation p.R349K 0.26 tolerated(0.66) benign(0.186) TCGA-FS-A1ZK-06 3 46245783 46245783 C T CCR1 Missense_Mutation p.E8K 0.28 tolerated(0.48) unknown(0) TCGA-FS-A1ZK-06 3 46307396 46307396 C T CCR3 Silent p.F270F 0.22 TCGA-FS-A1ZK-06 3 4735338 4735338 G A ITPR1 Silent p.K1383K 0.36 TCGA-FS-A1ZK-06 3 48501578 48501578 G A ATRIP Silent p.L375L 0.36 TCGA-FS-A1ZK-06 3 48669454 48669454 G A SLC26A6 Silent p.F203F 0.15 TCGA-FS-A1ZK-06 3 48682556 48682556 G A CELSR3 Silent p.Y2628Y 0.41 TCGA-FS-A1ZK-06 3 49070589 49070589 G A QRICH1 Missense_Mutation p.S620F 0.23 tolerated(0.41) possibly_damaging(0.882) TCGA-FS-A1ZK-06 3 49691938 49691938 G A BSN Missense_Mutation p.G1650E 0.30 unknown(0) TCGA-FS-A1ZK-06 3 49698439 49698439 C T BSN Missense_Mutation p.P3054L 0.22 unknown(0) TCGA-FS-A1ZK-06 3 49701892 49701892 G A BSN Missense_Mutation p.G3882E 0.28 probably_damaging(0.981) TCGA-FS-A1ZK-06 3 49775748 49775748 C G IP6K1 Missense_Mutation p.E111Q 0.22 tolerated(0.54) benign(0.329) TCGA-FS-A1ZK-06 3 49836508 49836508 G A CDHR4 Missense_Mutation p.H108Y 0.38 tolerated(1) benign(0) TCGA-FS-A1ZK-06 3 49851075 49851075 A C UBA7 Missense_Mutation p.V21G 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZK-06 3 50219719 50219719 G A SEMA3F Missense_Mutation p.E216K 0.31 tolerated(0.45) possibly_damaging(0.464) TCGA-FS-A1ZK-06 3 50645015 50645015 G A CISH 3'UTR 0.35 TCGA-FS-A1ZK-06 3 51297628 51297628 C T DOCK3 Silent p.I742I 0.40 TCGA-FS-A1ZK-06 3 51349912 51349912 G A DOCK3 Nonsense_Mutation p.W1033* 0.29 TCGA-FS-A1ZK-06 3 51395443 51395443 G A DOCK3 Missense_Mutation p.E1607K 0.20 tolerated(0.05) possibly_damaging(0.892) TCGA-FS-A1ZK-06 3 52027686 52027686 C T RPL29 3'UTR 0.28 TCGA-FS-A1ZK-06 3 52384571 52384571 C T DNAH1 Silent p.F898F 0.40 TCGA-FS-A1ZK-06 3 52384572 52384572 C T DNAH1 Missense_Mutation p.L899F 0.35 benign(0.001) TCGA-FS-A1ZK-06 3 52387454 52387454 C T DNAH1 Silent p.I1095I 0.29 TCGA-FS-A1ZK-06 3 52475386 52475386 G A SEMA3G Missense_Mutation p.S236F 0.40 tolerated(0.12) benign(0.392) TCGA-FS-A1ZK-06 3 52955764 52955764 G A SFMBT1 Silent p.T405T 0.28 TCGA-FS-A1ZK-06 3 54958730 54958730 G A LRTM1 Missense_Mutation p.L174F 0.33 tolerated(0.22) possibly_damaging(0.697) TCGA-FS-A1ZK-06 3 56627978 56627978 C T CCDC66 Silent p.L442L 0.20 TCGA-FS-A1ZK-06 3 56627979 56627979 C T CCDC66 Missense_Mutation p.R443C 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 3 57139951 57139951 G A IL17RD Silent p.F227F 0.31 TCGA-FS-A1ZK-06 3 57494215 57494215 G A DNAH12 Nonsense_Mutation p.Q199* 0.37 TCGA-FS-A1ZK-06 3 58094218 58094218 G A FLNB Missense_Mutation p.G659R 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 3 58190532 58190532 C T DNASE1L3 Missense_Mutation p.E133K 0.36 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZK-06 3 58190533 58190533 C T DNASE1L3 Silent p.R132R 0.35 TCGA-FS-A1ZK-06 3 73006469 73006469 G A GXYLT2 Silent p.Q314Q 0.27 TCGA-FS-A1ZK-06 3 73432519 73432519 T A PDZRN3 Silent p.V1066V 0.29 TCGA-FS-A1ZK-06 3 74313648 74313648 C T CNTN3 Missense_Mutation p.M997I 0.25 tolerated(0.2) benign(0.013) TCGA-FS-A1ZK-06 3 7456764 7456764 G A GRM7 Nonsense_Mutation p.W363* 0.33 TCGA-FS-A1ZK-06 3 77595509 77595509 C T ROBO2 Missense_Mutation p.R335W 0.29 deleterious(0.01) possibly_damaging(0.898) TCGA-FS-A1ZK-06 3 88040541 88040541 G A HTR1F Silent p.K214K 0.21 TCGA-FS-A1ZK-06 3 89468381 89468381 C T EPHA3 Missense_Mutation p.R639C 0.23 tolerated(0.16) probably_damaging(0.999) TCGA-FS-A1ZK-06 3 9771272 9771272 G A CPNE9 Missense_Mutation p.E520K 0.36 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZK-06 3 9793459 9793459 C G OGG1 Missense_Mutation p.R131G 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZK-06 3 9798618 9798618 C T OGG1 Intron 0.35 TCGA-FS-A1ZK-06 3 98002015 98002015 G A OR5H2 Missense_Mutation p.R95K 0.32 tolerated(1) benign(0) TCGA-FS-A1ZK-06 3 98002321 98002321 C T OR5H2 Missense_Mutation p.P197L 0.29 deleterious(0) possibly_damaging(0.772) TCGA-FS-A1ZK-06 3 9807638 9807638 C T OGG1 Missense_Mutation p.S365F 0.30 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FS-A1ZK-06 3 98251703 98251703 C T GPR15 Missense_Mutation p.P276S 0.31 tolerated(1) benign(0.005) TCGA-FS-A1ZK-06 4 100268182 100268182 C T ADH1C Silent p.G80G 0.38 TCGA-FS-A1ZK-06 4 102994886 102994886 A G BANK1 Missense_Mutation p.K782E 0.41 deleterious_low_confidence(0.01) benign(0.023) TCGA-FS-A1ZK-06 4 106156057 106156057 G A TET2 Missense_Mutation p.E320K 0.44 deleterious(0) possibly_damaging(0.606) TCGA-FS-A1ZK-06 4 106863686 106863686 C T NPNT Missense_Mutation p.P359L 0.45 tolerated(0.11) benign(0.341) TCGA-FS-A1ZK-06 4 108603283 108603283 G A PAPSS1 Missense_Mutation p.T186I 0.38 deleterious(0) probably_damaging(0.985) TCGA-FS-A1ZK-06 4 108817049 108817049 C T SGMS2 Missense_Mutation p.P114S 0.23 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZK-06 4 109765723 109765723 G A COL25A1 Silent p.I527I 0.42 TCGA-FS-A1ZK-06 4 110447419 110447419 C T SEC24B Silent p.V943V 0.36 TCGA-FS-A1ZK-06 4 113578503 113578503 C T LARP7 3'UTR 0.47 TCGA-FS-A1ZK-06 4 118006361 118006361 C T TRAM1L1 Silent p.E63E 0.43 TCGA-FS-A1ZK-06 4 123118412 123118412 T A KIAA1109 Missense_Mutation p.M424K 0.49 probably_damaging(0.962) TCGA-FS-A1ZK-06 4 123207824 123207824 G A KIAA1109 Missense_Mutation p.G3056R 0.43 probably_damaging(1) TCGA-FS-A1ZK-06 4 123265596 123265596 C T KIAA1109 Missense_Mutation p.L4205F 0.51 probably_damaging(0.989) TCGA-FS-A1ZK-06 4 1244873 1244873 C T CTBP1 5'Flank 0.11 TCGA-FS-A1ZK-06 4 126371308 126371308 C T FAT4 Missense_Mutation p.S3046F 0.37 probably_damaging(0.954) TCGA-FS-A1ZK-06 4 126371652 126371652 G A FAT4 Missense_Mutation p.E3161K 0.44 possibly_damaging(0.616) TCGA-FS-A1ZK-06 4 126373044 126373044 G A FAT4 Missense_Mutation p.G3625S 0.34 benign(0.099) TCGA-FS-A1ZK-06 4 126411747 126411747 C T FAT4 Silent p.Y4590Y 0.56 TCGA-FS-A1ZK-06 4 13605633 13605633 G A BOD1L1 Missense_Mutation p.P964L 0.13 benign(0.367) TCGA-FS-A1ZK-06 4 138442737 138442737 C T PCDH18 Missense_Mutation p.E952K 0.42 tolerated(0.22) probably_damaging(0.997) TCGA-FS-A1ZK-06 4 146067531 146067531 G A OTUD4 Missense_Mutation p.S372F 0.42 deleterious(0.03) possibly_damaging(0.532) TCGA-FS-A1ZK-06 4 151749500 151749500 G A LRBA Missense_Mutation p.P1668L 0.42 deleterious_low_confidence(0.04) benign(0.073) TCGA-FS-A1ZK-06 4 155458438 155458438 G A PLRG1 Silent p.A495A 0.46 TCGA-FS-A1ZK-06 4 156136099 156136099 C T NPY2R Silent p.F336F 0.37 TCGA-FS-A1ZK-06 4 156698722 156698722 C T GUCY1B3 Silent p.F75F 0.30 TCGA-FS-A1ZK-06 4 156725868 156725868 G A GUCY1B3 Missense_Mutation p.G560R 0.36 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 4 15835868 15835868 G A CD38 Nonsense_Mutation p.W176* 0.16 TCGA-FS-A1ZK-06 4 164272606 164272606 A T NPY5R Missense_Mutation p.N394I 0.40 deleterious(0) possibly_damaging(0.73) TCGA-FS-A1ZK-06 4 169196545 169196545 C T DDX60 Missense_Mutation p.R752K 0.44 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 4 175184040 175184040 G A FBXO8 Silent p.F68F 0.34 TCGA-FS-A1ZK-06 4 187539895 187539895 G A FAT1 Silent p.V2615V 0.33 TCGA-FS-A1ZK-06 4 20255468 20255468 C T SLIT2 Silent p.S10S 0.17 TCGA-FS-A1ZK-06 4 20555447 20555447 C T SLIT2 Missense_Mutation p.L861F 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZK-06 4 2274994 2274994 C T ZFYVE28 Silent p.T743T 0.41 TCGA-FS-A1ZK-06 4 24833217 24833217 G A CCDC149 Silent p.S292S 0.17 TCGA-FS-A1ZK-06 4 25030200 25030200 C T LGI2 Silent p.L66L 0.10 TCGA-FS-A1ZK-06 4 26614788 26614788 T C TBC1D19 Intron 0.14 TCGA-FS-A1ZK-06 4 27019330 27019330 C T STIM2 Intron 0.14 TCGA-FS-A1ZK-06 4 3101017 3101017 C T HTT Nonsense_Mutation p.Q122* 0.51 TCGA-FS-A1ZK-06 4 3148619 3148619 C T HTT Missense_Mutation p.P1080L 0.15 benign(0.356) TCGA-FS-A1ZK-06 4 3237335 3237335 C T HTT Missense_Mutation p.S2872F 0.09 possibly_damaging(0.775) TCGA-FS-A1ZK-06 4 3429978 3429978 C T RGS12 Intron 0.15 TCGA-FS-A1ZK-06 4 3429979 3429979 C T RGS12 Intron 0.15 TCGA-FS-A1ZK-06 4 3446151 3446151 G A HGFAC Missense_Mutation p.E238K 0.41 tolerated(0.55) benign(0.003) TCGA-FS-A1ZK-06 4 3465067 3465067 C T DOK7 5'UTR 0.14 TCGA-FS-A1ZK-06 4 36163142 36163142 G A ARAP2 Missense_Mutation p.S735F 0.18 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZK-06 4 38799133 38799133 G A TLR1 Silent p.F440F 0.12 TCGA-FS-A1ZK-06 4 39216225 39216225 A G WDR19 Missense_Mutation p.K299E 0.15 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 4 39304682 39304682 G A RFC1 Nonsense_Mutation p.Q735* 0.15 TCGA-FS-A1ZK-06 4 39409047 39409047 C T KLB Missense_Mutation p.P160S 0.29 tolerated(0.06) possibly_damaging(0.859) TCGA-FS-A1ZK-06 4 39929628 39929628 G A PDS5A Missense_Mutation p.R99C 0.12 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 4 40434799 40434799 G A RBM47 Missense_Mutation p.H471Y 0.16 tolerated_low_confidence(0.27) probably_damaging(0.985) TCGA-FS-A1ZK-06 4 41750415 41750415 C T PHOX2B Silent p.R71R 0.10 TCGA-FS-A1ZK-06 4 4411407 4411407 C T NSG1 Silent p.L118L 0.18 TCGA-FS-A1ZK-06 4 47033624 47033624 C T GABRB1 5'UTR 0.16 TCGA-FS-A1ZK-06 4 47517562 47517562 G A ATP10D Silent p.K120K 0.20 TCGA-FS-A1ZK-06 4 47527602 47527602 C T ATP10D Missense_Mutation p.S240F 0.11 tolerated(0.11) benign(0.144) TCGA-FS-A1ZK-06 4 48490949 48490949 C T SLC10A4 Missense_Mutation p.S436F 0.36 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-FS-A1ZK-06 4 48894788 48894788 C T OCIAD2 Splice_Site p.X128_splice 0.13 TCGA-FS-A1ZK-06 4 49019268 49019268 C T CWH43 Silent p.L397L 0.27 TCGA-FS-A1ZK-06 4 52928431 52928431 C T SPATA18 Missense_Mutation p.R119W 0.27 tolerated(0.11) benign(0.001) TCGA-FS-A1ZK-06 4 52944959 52944959 C T SPATA18 Missense_Mutation p.S360L 0.07 tolerated(0.1) probably_damaging(0.947) TCGA-FS-A1ZK-06 4 54967870 54967870 G A GSX2 Silent p.R232R 0.10 TCGA-FS-A1ZK-06 4 55138611 55138611 G A PDGFRA Missense_Mutation p.G430R 0.13 tolerated(0.82) benign(0.02) TCGA-FS-A1ZK-06 4 55976878 55976878 C T KDR Missense_Mutation p.G345E 0.18 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZK-06 4 55976879 55976879 C T KDR Missense_Mutation p.G345R 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZK-06 4 55984928 55984928 C T KDR Silent p.Q67Q 0.13 TCGA-FS-A1ZK-06 4 56466727 56466727 G A NMU Missense_Mutation p.P151S 0.31 deleterious(0.01) possibly_damaging(0.778) TCGA-FS-A1ZK-06 4 57182491 57182491 C T KIAA1211 Silent p.S941S 0.14 TCGA-FS-A1ZK-06 4 57182492 57182492 C T KIAA1211 Nonsense_Mutation p.Q942* 0.13 TCGA-FS-A1ZK-06 4 5806507 5806507 C T EVC Missense_Mutation p.P834S 0.15 tolerated(0.72) benign(0.015) TCGA-FS-A1ZK-06 4 62845460 62845460 C T LPHN3 Silent p.F927F 0.20 TCGA-FS-A1ZK-06 4 62935951 62935951 C T LPHN3 Silent p.D1245D 0.18 TCGA-FS-A1ZK-06 4 679631 679631 G A MFSD7 Missense_Mutation p.P193L 0.17 tolerated(0.13) benign(0.008) TCGA-FS-A1ZK-06 4 68795664 68795664 T G TMPRSS11A Missense_Mutation p.I142L 0.48 deleterious(0.04) benign(0.003) TCGA-FS-A1ZK-06 4 69101868 69101868 C T TMPRSS11B Splice_Site p.X80_splice 0.30 TCGA-FS-A1ZK-06 4 70156380 70156380 G A UGT2B28 Silent p.G387G 0.40 TCGA-FS-A1ZK-06 4 71275427 71275427 C T PROL1 Missense_Mutation p.P128S 0.41 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FS-A1ZK-06 4 71347507 71347507 C T MUC7 Missense_Mutation p.S349L 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-FS-A1ZK-06 4 73185051 73185051 G A ADAMTS3 Silent p.I450I 0.49 TCGA-FS-A1ZK-06 4 73956602 73956602 G A ANKRD17 Missense_Mutation p.P2248L 0.40 benign(0) TCGA-FS-A1ZK-06 4 77977123 77977123 G A CCNI Missense_Mutation p.L151F 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 4 7844898 7844898 A G AFAP1 Silent p.L172L 0.16 TCGA-FS-A1ZK-06 4 78669520 78669520 G A CNOT6L Missense_Mutation p.P170L 0.40 deleterious(0) probably_damaging(0.955) TCGA-FS-A1ZK-06 4 80246504 80246504 C T NAA11 Silent p.E176E 0.47 TCGA-FS-A1ZK-06 4 80828455 80828455 C T ANTXR2 3'UTR 0.30 TCGA-FS-A1ZK-06 4 8383293 8383293 G A ACOX3 Nonsense_Mutation p.R527* 0.16 TCGA-FS-A1ZK-06 4 8383294 8383294 G A ACOX3 Silent p.L526L 0.16 TCGA-FS-A1ZK-06 4 8401291 8401291 G A ACOX3 Missense_Mutation p.P289S 0.14 tolerated(0.49) benign(0.009) TCGA-FS-A1ZK-06 4 8472850 8472850 C T TRMT44 Missense_Mutation p.T656M 0.13 deleterious(0.04) benign(0.101) TCGA-FS-A1ZK-06 4 85525461 85525461 T C CDS1 Silent p.I61I 0.43 TCGA-FS-A1ZK-06 4 85525463 85525463 C T CDS1 Missense_Mutation p.P62L 0.44 deleterious(0.01) benign(0.016) TCGA-FS-A1ZK-06 4 86916189 86916189 G A ARHGAP24 Missense_Mutation p.R461K 0.57 tolerated(0.09) benign(0.146) TCGA-FS-A1ZK-06 4 89311825 89311825 G A HERC6 Missense_Mutation p.G153E 0.61 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 4 89601295 89601295 T - HERC3 Frame_Shift_Del p.L752Ffs*4 0.31 TCGA-FS-A1ZK-06 4 90171111 90171111 G A GPRIN3 Missense_Mutation p.P51S 0.49 tolerated(0.08) benign(0.229) TCGA-FS-A1ZK-06 4 96106277 96106277 C T UNC5C Missense_Mutation p.G736D 0.36 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 4 96106278 96106278 C T UNC5C Missense_Mutation p.G736S 0.37 tolerated(0.12) benign(0.101) TCGA-FS-A1ZK-06 5 10263337 10263337 C T CCT5 Missense_Mutation p.P470L 0.24 deleterious(0) possibly_damaging(0.593) TCGA-FS-A1ZK-06 5 109202816 109202816 G A MAN2A1 3'UTR 0.36 TCGA-FS-A1ZK-06 5 10973618 10973618 C T CTNND2 Missense_Mutation p.E1209K 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-FS-A1ZK-06 5 112915296 112915296 C T YTHDC2 Silent p.P1086P 0.16 TCGA-FS-A1ZK-06 5 118844910 118844910 G A HSD17B4 Missense_Mutation p.G495S 0.20 deleterious(0.01) benign(0.219) TCGA-FS-A1ZK-06 5 122361629 122361629 C T PPIC Silent p.E120E 0.10 TCGA-FS-A1ZK-06 5 125919695 125919695 G A ALDH7A1 Missense_Mutation p.P108S 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 127640745 127640745 C T FBN2 Missense_Mutation p.V1902I 0.26 tolerated(0.48) possibly_damaging(0.661) TCGA-FS-A1ZK-06 5 129037197 129037197 G A ADAMTS19 Missense_Mutation p.R1018K 0.19 tolerated(0.59) benign(0.01) TCGA-FS-A1ZK-06 5 131309017 131309017 G A ACSL6 Missense_Mutation p.A382V 0.23 tolerated(0.23) benign(0.127) TCGA-FS-A1ZK-06 5 134076819 134076819 C T CAMLG Missense_Mutation p.S80F 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 135389719 135389719 C T TGFBI Missense_Mutation p.S405F 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 13716662 13716662 G A DNAH5 Silent p.F4281F 0.21 TCGA-FS-A1ZK-06 5 137426466 137426466 G A WNT8A Missense_Mutation p.E254K 0.40 tolerated(0.19) possibly_damaging(0.528) TCGA-FS-A1ZK-06 5 137803292 137803292 C T EGR1 Missense_Mutation p.T385I 0.15 deleterious(0) unknown(0) TCGA-FS-A1ZK-06 5 137803293 137803293 C T EGR1 Silent p.T385T 0.13 TCGA-FS-A1ZK-06 5 139006447 139006447 C T UBE2D2 3'UTR 0.33 TCGA-FS-A1ZK-06 5 139006448 139006448 C T UBE2D2 3'UTR 0.35 TCGA-FS-A1ZK-06 5 140202124 140202124 C T PCDHA5 Missense_Mutation p.P255L 0.15 tolerated_low_confidence(0.22) benign(0.044) TCGA-FS-A1ZK-06 5 140208798 140208798 G A PCDHA6 Silent p.V374V 0.40 TCGA-FS-A1ZK-06 5 140256034 140256034 G A PCDHA12 Missense_Mutation p.G326E 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 5 140263218 140263218 C T PCDHA13 Silent p.F455F 0.17 TCGA-FS-A1ZK-06 5 140501932 140501932 G A PCDHB4 Missense_Mutation p.G118R 0.19 deleterious_low_confidence(0.01) benign(0.069) TCGA-FS-A1ZK-06 5 140563511 140563511 C T PCDHB16 Silent p.F459F 0.35 TCGA-FS-A1ZK-06 5 140589305 140589305 G A PCDHB12 Missense_Mutation p.E276K 0.40 tolerated_low_confidence(0.27) benign(0.119) TCGA-FS-A1ZK-06 5 140755006 140755006 C T PCDHGA6 Silent p.F452F 0.45 TCGA-FS-A1ZK-06 5 140789035 140789035 C T PCDHGB6 Silent p.I422I 0.41 TCGA-FS-A1ZK-06 5 140896314 140896314 A G DIAPH1 3'UTR 0.40 TCGA-FS-A1ZK-06 5 141009682 141009682 G A HDAC3 Missense_Mutation p.P98S 0.50 deleterious(0.01) benign(0.06) TCGA-FS-A1ZK-06 5 141335404 141335404 C T PCDH12 Nonsense_Mutation p.W671* 0.40 TCGA-FS-A1ZK-06 5 145500056 145500056 G A LARS Missense_Mutation p.S1068F 0.45 deleterious(0.04) benign(0.057) TCGA-FS-A1ZK-06 5 147010991 147010991 C T JAKMIP2 Missense_Mutation p.M620I 0.46 tolerated(0.2) benign(0.001) TCGA-FS-A1ZK-06 5 147258400 147258400 A G SCGB3A2 Missense_Mutation p.I12V 0.43 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 5 147470749 147470749 C T SPINK5 Silent p.A208A 0.26 TCGA-FS-A1ZK-06 5 148727857 148727857 A T GRPEL2 Missense_Mutation p.T34S 0.42 deleterious(0.02) probably_damaging(0.918) TCGA-FS-A1ZK-06 5 148727858 148727858 C T GRPEL2 Missense_Mutation p.T34I 0.43 deleterious(0) probably_damaging(0.913) TCGA-FS-A1ZK-06 5 149001562 149001562 C T ARHGEF37 Silent p.F424F 0.44 TCGA-FS-A1ZK-06 5 149212591 149212591 C T PPARGC1B Missense_Mutation p.P319S 0.35 tolerated(0.09) probably_damaging(0.949) TCGA-FS-A1ZK-06 5 149294570 149294570 C T PDE6A Missense_Mutation p.E312K 0.46 tolerated(0.06) probably_damaging(0.992) TCGA-FS-A1ZK-06 5 149563178 149563178 C T CDX1 Missense_Mutation p.P245S 0.45 tolerated(1) benign(0.004) TCGA-FS-A1ZK-06 5 149784691 149784691 T C CD74 Missense_Mutation p.N165S 0.36 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 149900862 149900862 C T NDST1 Missense_Mutation p.P16S 0.28 deleterious_low_confidence(0.02) benign(0.432) TCGA-FS-A1ZK-06 5 150158501 150158501 C T AC010441.1 Missense_Mutation p.P124S 0.23 benign(0.001) TCGA-FS-A1ZK-06 5 150838456 150838456 C T SLC36A1 Missense_Mutation p.P35S 0.28 tolerated(0.31) benign(0.002) TCGA-FS-A1ZK-06 5 150853240 150853240 C T SLC36A1 Missense_Mutation p.P244S 0.41 tolerated(0.09) possibly_damaging(0.777) TCGA-FS-A1ZK-06 5 150946847 150946847 G A FAT2 Missense_Mutation p.S549F 0.15 benign(0.021) TCGA-FS-A1ZK-06 5 153175112 153175112 G A GRIA1 Intron 0.41 TCGA-FS-A1ZK-06 5 156757855 156757855 C T CYFIP2 Silent p.V728V 0.19 TCGA-FS-A1ZK-06 5 159680613 159680613 G T CCNJL Silent p.S360S 0.24 TCGA-FS-A1ZK-06 5 160721399 160721399 C T GABRB2 Missense_Mutation p.E410K 0.36 tolerated(0.12) benign(0.248) TCGA-FS-A1ZK-06 5 16091132 16091132 C T MARCH11 Missense_Mutation p.G251E 0.57 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZK-06 5 161580318 161580318 C T GABRG2 Missense_Mutation p.P498S 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 167995999 167995999 G A PANK3 Silent p.F11F 0.16 TCGA-FS-A1ZK-06 5 169810805 169810805 C T KCNMB1 Missense_Mutation p.D62N 0.40 tolerated(0.1) possibly_damaging(0.486) TCGA-FS-A1ZK-06 5 169810806 169810806 C T KCNMB1 Silent p.R61R 0.40 TCGA-FS-A1ZK-06 5 173531337 173531337 A T NSG2 Missense_Mutation p.Y107F 0.23 tolerated(0.34) benign(0.021) TCGA-FS-A1ZK-06 5 176812796 176812796 C T SLC34A1 Silent p.V18V 0.50 TCGA-FS-A1ZK-06 5 177031345 177031345 C T B4GALT7 Silent p.P72P 0.40 TCGA-FS-A1ZK-06 5 177683400 177683400 T G COL23A1 Splice_Site p.X280_splice 0.46 TCGA-FS-A1ZK-06 5 178392003 178392003 C T ZNF454 Missense_Mutation p.H200Y 0.39 tolerated(0.14) probably_damaging(0.998) TCGA-FS-A1ZK-06 5 179665329 179665349 AACCTGAAGGCTGATCTTTTA - MAPK9 Splice_Site p.X372_splice 0.20 TCGA-FS-A1ZK-06 5 180582833 180582833 G A OR2V2 Silent p.E297E 0.25 TCGA-FS-A1ZK-06 5 23522720 23522720 C T PRDM9 Intron 0.68 TCGA-FS-A1ZK-06 5 2749113 2749113 C T IRX2 Missense_Mutation p.D237N 0.33 deleterious(0.05) probably_damaging(0.915) TCGA-FS-A1ZK-06 5 31305295 31305295 A G CDH6 Silent p.E338E 0.20 TCGA-FS-A1ZK-06 5 31983414 31983414 G A PDZD2 Silent p.A210A 0.25 TCGA-FS-A1ZK-06 5 32000310 32000310 C T PDZD2 Missense_Mutation p.S396F 0.62 deleterious(0) possibly_damaging(0.904) TCGA-FS-A1ZK-06 5 33936834 33936834 A G RXFP3 5'UTR 0.53 TCGA-FS-A1ZK-06 5 35010218 35010218 C T AGXT2 Missense_Mutation p.E409K 0.46 tolerated(0.55) benign(0.052) TCGA-FS-A1ZK-06 5 35875626 35875626 C T IL7R Silent p.I271I 0.72 TCGA-FS-A1ZK-06 5 35876118 35876118 C T IL7R Silent p.L304L 0.28 TCGA-FS-A1ZK-06 5 35876163 35876163 G A IL7R Missense_Mutation p.E319K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 5 35876214 35876214 G A IL7R Missense_Mutation p.E336K 0.27 deleterious(0) probably_damaging(0.956) TCGA-FS-A1ZK-06 5 35876216 35876216 G A IL7R Silent p.E336E 0.26 TCGA-FS-A1ZK-06 5 38954908 38954908 G A RICTOR Missense_Mutation p.H889Y 0.33 deleterious(0.03) possibly_damaging(0.713) TCGA-FS-A1ZK-06 5 40945459 40945459 C T C7 Missense_Mutation p.H243Y 0.28 tolerated(1) benign(0.008) TCGA-FS-A1ZK-06 5 40955588 40955588 G A C7 Missense_Mutation p.G398E 0.66 tolerated(0.2) benign(0.14) TCGA-FS-A1ZK-06 5 43502496 43502496 G A C5orf34 Missense_Mutation p.S377F 0.30 tolerated(0.26) benign(0.293) TCGA-FS-A1ZK-06 5 458137 458137 C T EXOC3 Silent p.F429F 0.35 TCGA-FS-A1ZK-06 5 50118184 50118184 C T PARP8 Nonsense_Mutation p.R604* 0.29 TCGA-FS-A1ZK-06 5 54696093 54696093 C T SKIV2L2 Silent p.P775P 0.17 TCGA-FS-A1ZK-06 5 57750377 57750377 G A PLK2 3'UTR 0.38 TCGA-FS-A1ZK-06 5 58511729 58511729 G A PDE4D Missense_Mutation p.S174F 0.21 deleterious_low_confidence(0.03) benign(0.022) TCGA-FS-A1ZK-06 5 61779894 61779894 C T IPO11 Missense_Mutation p.P400L 0.24 tolerated(0.16) benign(0.168) TCGA-FS-A1ZK-06 5 63905011 63905011 A G RGS7BP Missense_Mutation p.T236A 0.57 tolerated_low_confidence(0.12) unknown(0) TCGA-FS-A1ZK-06 5 72419681 72419681 C T TMEM171 Missense_Mutation p.L161F 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZK-06 5 73045673 73045673 G A ARHGEF28 Missense_Mutation p.M15I 0.19 tolerated(0.27) benign(0) TCGA-FS-A1ZK-06 5 75428043 75428043 C T SV2C Silent p.F156F 0.44 TCGA-FS-A1ZK-06 5 76359187 76359187 C T AGGF1 3'UTR 0.58 TCGA-FS-A1ZK-06 5 78610468 78610468 C T JMY Missense_Mutation p.P818L 0.60 tolerated(0.08) benign(0.013) TCGA-FS-A1ZK-06 5 80546944 80546944 G A CKMT2 5'UTR 0.45 TCGA-FS-A1ZK-06 5 82834173 82834173 G A VCAN Missense_Mutation p.R1784K 0.16 tolerated(0.96) benign(0.002) TCGA-FS-A1ZK-06 5 9122771 9122771 G T SEMA5A Missense_Mutation p.S593Y 0.23 deleterious(0) possibly_damaging(0.677) TCGA-FS-A1ZK-06 5 94936653 94936653 C T ARSK Missense_Mutation p.P400L 0.40 deleterious(0) benign(0.25) TCGA-FS-A1ZK-06 5 96098871 96098871 T A ERAP1 3'UTR 0.40 TCGA-FS-A1ZK-06 6 101296463 101296463 G A ASCC3 Missense_Mutation p.P121L 0.59 deleterious(0.03) possibly_damaging(0.758) TCGA-FS-A1ZK-06 6 106552934 106552934 C T PRDM1 Missense_Mutation p.P300L 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 6 10874655 10874655 G A GCM2 Missense_Mutation p.P365L 0.14 deleterious(0) possibly_damaging(0.717) TCGA-FS-A1ZK-06 6 109274522 109274522 C T ARMC2 Missense_Mutation p.P628L 0.38 tolerated(0.26) benign(0.129) TCGA-FS-A1ZK-06 6 110113863 110113863 T C FIG4 Missense_Mutation p.S819P 0.43 deleterious(0.05) benign(0.017) TCGA-FS-A1ZK-06 6 111632369 111632369 C T REV3L Missense_Mutation p.G2900R 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-FS-A1ZK-06 6 112397626 112397626 G A TUBE1 Missense_Mutation p.P179S 0.54 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 6 122743417 122743417 T G HSF2 Missense_Mutation p.N268K 0.38 tolerated(0.69) benign(0.243) TCGA-FS-A1ZK-06 6 127440300 127440300 G A RSPO3 5'UTR 0.44 TCGA-FS-A1ZK-06 6 128306886 128306886 G A PTPRK Silent p.G1083G 0.37 TCGA-FS-A1ZK-06 6 12933957 12933957 G A PHACTR1 Missense_Mutation p.E115K 0.22 unknown(0) TCGA-FS-A1ZK-06 6 131894364 131894364 C T ARG1 5'Flank 0.52 TCGA-FS-A1ZK-06 6 132022493 132022493 G A OR2A4 Missense_Mutation p.P17S 0.37 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 6 132030147 132030147 C T CTAGE9 Missense_Mutation p.D671N 0.50 tolerated(0.3) benign(0.018) TCGA-FS-A1ZK-06 6 132874354 132874354 G A TAAR8 Missense_Mutation p.G175R 0.39 deleterious(0.02) possibly_damaging(0.816) TCGA-FS-A1ZK-06 6 133044008 133044008 C T VNN3 3'Flank 0.44 TCGA-FS-A1ZK-06 6 136429878 136429878 G A PDE7B Missense_Mutation p.R31Q 0.44 deleterious_low_confidence(0.05) benign(0.007) TCGA-FS-A1ZK-06 6 137245365 137245365 T G SLC35D3 Missense_Mutation p.V261G 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 6 137519129 137519129 G A IFNGR1 3'UTR 0.44 TCGA-FS-A1ZK-06 6 143074685 143074685 G A HIVEP2 Silent p.S2300S 0.38 TCGA-FS-A1ZK-06 6 143091889 143091889 G A HIVEP2 Silent p.L1329L 0.56 TCGA-FS-A1ZK-06 6 144852338 144852338 G A UTRN Silent p.Q2019Q 0.46 TCGA-FS-A1ZK-06 6 146720176 146720176 C T GRM1 Silent p.S667S 0.41 TCGA-FS-A1ZK-06 6 150266536 150266536 G A ULBP2 Silent p.K59K 0.43 TCGA-FS-A1ZK-06 6 151206843 151206843 G A MTHFD1L Missense_Mutation p.A206T 0.39 deleterious(0) probably_damaging(0.948) TCGA-FS-A1ZK-06 6 151917610 151917610 G A CCDC170 Silent p.R536R 0.38 TCGA-FS-A1ZK-06 6 152725395 152725395 C A SYNE1 Missense_Mutation p.D2260Y 0.32 benign(0.396) TCGA-FS-A1ZK-06 6 155114102 155114102 A C SCAF8 Missense_Mutation p.N156T 0.42 deleterious(0.04) unknown(0) TCGA-FS-A1ZK-06 6 158342637 158342637 C T SNX9 Missense_Mutation p.P342S 0.49 deleterious(0) benign(0.416) TCGA-FS-A1ZK-06 6 16328174 16328174 A C ATXN1 Missense_Mutation p.L123R 0.11 deleterious(0) probably_damaging(0.945) TCGA-FS-A1ZK-06 6 167570376 167570376 C T GPR31 Missense_Mutation p.R315K 0.39 tolerated(1) benign(0.002) TCGA-FS-A1ZK-06 6 167753716 167753716 A T TTLL2 Nonsense_Mutation p.K110* 0.58 TCGA-FS-A1ZK-06 6 167755030 167755030 G A TTLL2 Missense_Mutation p.A548T 0.41 tolerated(0.57) benign(0.003) TCGA-FS-A1ZK-06 6 17292259 17292259 G A RBM24 Missense_Mutation p.G207E 0.20 tolerated(0.17) benign(0.08) TCGA-FS-A1ZK-06 6 17837260 17837260 T C KIF13A Missense_Mutation p.N335S 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A1ZK-06 6 24205394 24205394 G A DCDC2 Intron 0.20 TCGA-FS-A1ZK-06 6 24358102 24358102 C T KAAG1 Missense_Mutation p.P79S 0.19 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-FS-A1ZK-06 6 24547559 24547559 C T KIAA0319 Missense_Mutation p.R1018Q 0.33 deleterious(0.02) probably_damaging(0.96) TCGA-FS-A1ZK-06 6 25726745 25726745 C T HIST1H2AA Missense_Mutation p.R4Q 0.12 deleterious_low_confidence(0.02) benign(0.006) TCGA-FS-A1ZK-06 6 26021936 26021936 T C HIST1H4A Silent p.G10G 0.15 TCGA-FS-A1ZK-06 6 26108188 26108188 G A HIST1H1T Missense_Mutation p.S45F 0.12 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 6 26234973 26234973 A T HIST1H1D Silent p.L63L 0.17 TCGA-FS-A1ZK-06 6 26373641 26373641 C T BTN3A2 Missense_Mutation p.R322C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-FS-A1ZK-06 6 26423481 26423481 G A BTN2A3P RNA 0.10 TCGA-FS-A1ZK-06 6 26598510 26598510 C T ABT1 Silent p.T152T 0.15 TCGA-FS-A1ZK-06 6 27107257 27107257 G A HIST1H4I Missense_Mutation p.G57E 0.17 deleterious(0.04) benign(0.229) TCGA-FS-A1ZK-06 6 27792003 27792003 C T HIST1H4J Missense_Mutation p.A34V 0.13 deleterious(0.04) possibly_damaging(0.548) TCGA-FS-A1ZK-06 6 27879100 27879100 T A OR2B2 Missense_Mutation p.N333I 0.15 deleterious_low_confidence(0.01) benign(0.001) TCGA-FS-A1ZK-06 6 28334106 28334106 C T ZKSCAN3 3'UTR 0.13 TCGA-FS-A1ZK-06 6 28471992 28471992 G A GPX6 3'UTR 0.17 TCGA-FS-A1ZK-06 6 28472169 28472169 C T GPX6 Missense_Mutation p.G189E 0.19 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZK-06 6 28501753 28501753 C T GPX5 Missense_Mutation p.P159S 0.16 tolerated(0.17) benign(0.047) TCGA-FS-A1ZK-06 6 28540061 28540061 C T SCAND3 Missense_Mutation p.G1202E 0.11 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-FS-A1ZK-06 6 28541011 28541011 C T SCAND3 Missense_Mutation p.M885I 0.18 tolerated(0.97) probably_damaging(0.954) TCGA-FS-A1ZK-06 6 28543816 28543816 C T SCAND3 Missense_Mutation p.M222I 0.16 deleterious_low_confidence(0.03) benign(0.014) TCGA-FS-A1ZK-06 6 28872399 28872399 G A TRIM27 Silent p.I330I 0.10 TCGA-FS-A1ZK-06 6 2890624 2890624 C T SERPINB9 Missense_Mutation p.A302T 0.14 deleterious(0) probably_damaging(0.948) TCGA-FS-A1ZK-06 6 29141649 29141649 C T OR2J2 Silent p.I79I 0.14 TCGA-FS-A1ZK-06 6 29141898 29141898 C T OR2J2 Silent p.S162S 0.12 TCGA-FS-A1ZK-06 6 29142344 29142344 G A OR2J2 Missense_Mutation p.G311E 0.15 tolerated(0.07) benign(0.003) TCGA-FS-A1ZK-06 6 29395052 29395052 G A OR11A1 Missense_Mutation p.R123C 0.10 deleterious(0.01) possibly_damaging(0.896) TCGA-FS-A1ZK-06 6 29395053 29395053 G A OR11A1 Silent p.D122D 0.10 TCGA-FS-A1ZK-06 6 29455262 29455262 C T MAS1L Missense_Mutation p.G140R 0.27 tolerated(0.55) benign(0.216) TCGA-FS-A1ZK-06 6 29523759 29523759 C T UBD Silent p.V132V 0.20 TCGA-FS-A1ZK-06 6 29572283 29572283 C T GABBR1 Silent p.K900K 0.20 TCGA-FS-A1ZK-06 6 30080314 30080314 C T TRIM31 Missense_Mutation p.R90K 0.16 tolerated(0.58) benign(0.093) TCGA-FS-A1ZK-06 6 30614376 30614376 T C ATAT1 Missense_Mutation p.F396L 0.12 deleterious(0.05) benign(0.011) TCGA-FS-A1ZK-06 6 30633412 30633412 G A DHX16 Silent p.F255F 0.09 TCGA-FS-A1ZK-06 6 30658016 30658016 G A NRM Silent p.A46A 0.09 TCGA-FS-A1ZK-06 6 30865183 30865183 C T DDR1 Silent p.I681I 0.09 TCGA-FS-A1ZK-06 6 31079437 31079437 T G C6orf15 Silent p.P233P 0.22 TCGA-FS-A1ZK-06 6 31079678 31079678 C T C6orf15 Missense_Mutation p.G153E 0.11 tolerated(0.8) benign(0.01) TCGA-FS-A1ZK-06 6 31079679 31079679 C T C6orf15 Missense_Mutation p.G153R 0.11 tolerated(0.2) benign(0.366) TCGA-FS-A1ZK-06 6 31133377 31133377 C T POU5F1 Missense_Mutation p.E210K 0.09 deleterious(0.02) possibly_damaging(0.733) TCGA-FS-A1ZK-06 6 31170622 31170622 C T HCG27 3'UTR 0.24 TCGA-FS-A1ZK-06 6 31431899 31431899 C T HCP5 RNA 0.13 TCGA-FS-A1ZK-06 6 31543539 31543539 C T TNF Silent p.I7I 0.07 TCGA-FS-A1ZK-06 6 31545302 31545302 C T TNF Silent p.I230I 0.10 TCGA-FS-A1ZK-06 6 31594583 31594583 C T PRRC2A Silent p.L339L 0.10 TCGA-FS-A1ZK-06 6 31617103 31617103 G T BAG6 Missense_Mutation p.S99Y 0.06 deleterious(0.02) probably_damaging(0.954) TCGA-FS-A1ZK-06 6 31654961 31654961 T A ABHD16A 3'UTR 0.14 TCGA-FS-A1ZK-06 6 31692559 31692559 G A C6orf25 Missense_Mutation p.E187K 0.13 deleterious_low_confidence(0.04) benign(0.041) TCGA-FS-A1ZK-06 6 31700063 31700063 C T CLIC1 Silent p.R165R 0.19 TCGA-FS-A1ZK-06 6 31704213 31704213 C G CLIC1 Intron 0.23 TCGA-FS-A1ZK-06 6 31746792 31746792 G A VARS Silent p.G1226G 0.09 TCGA-FS-A1ZK-06 6 31762881 31762881 G A VARS Silent p.P38P 0.18 TCGA-FS-A1ZK-06 6 31777773 31777773 G A HSPA1L 3'UTR 0.09 TCGA-FS-A1ZK-06 6 31795572 31795572 C T HSPA1B 5'UTR 0.15 TCGA-FS-A1ZK-06 6 31860664 31860664 G A EHMT2 Silent p.P202P 0.11 TCGA-FS-A1ZK-06 6 31860665 31860665 G A EHMT2 Missense_Mutation p.P202L 0.11 tolerated_low_confidence(0.06) benign(0.097) TCGA-FS-A1ZK-06 6 31868259 31868259 C T ZBTB12 Missense_Mutation p.G275E 0.15 deleterious(0.01) probably_damaging(0.931) TCGA-FS-A1ZK-06 6 31911418 31911418 C T CFB Intron 0.12 TCGA-FS-A1ZK-06 6 31911475 31911475 C T CFB Missense_Mutation p.S388F 0.13 deleterious(0.03) probably_damaging(0.943) TCGA-FS-A1ZK-06 6 31913902 31913902 G A CFB 5'UTR 0.14 TCGA-FS-A1ZK-06 6 31915562 31915562 C T CFB Silent p.F736F 0.37 TCGA-FS-A1ZK-06 6 31918170 31918170 G A CFB Silent p.K1040K 0.13 TCGA-FS-A1ZK-06 6 31919995 31919995 G A NELFE 3'UTR 0.10 TCGA-FS-A1ZK-06 6 31928457 31928457 C T SKIV2L Missense_Mutation p.P162S 0.09 tolerated(0.33) possibly_damaging(0.504) TCGA-FS-A1ZK-06 6 31964370 31964370 G A C4A Silent p.E1223E 0.07 TCGA-FS-A1ZK-06 6 31975481 31975481 G A AL645922.1 5'Flank 0.11 TCGA-FS-A1ZK-06 6 31976210 31976210 T C AL645922.1 5'Flank 0.16 TCGA-FS-A1ZK-06 6 31994858 31994858 C T C4B Silent p.L851L 0.18 TCGA-FS-A1ZK-06 6 31997536 31997536 C T C4B Silent p.T1290T 0.06 TCGA-FS-A1ZK-06 6 32023726 32023726 G A TNXB Missense_Mutation p.T2790I 0.18 benign(0.12) TCGA-FS-A1ZK-06 6 32026088 32026088 G A TNXB Silent p.L2524L 0.09 TCGA-FS-A1ZK-06 6 32047071 32047071 C T RNA5SP206 5'Flank 0.09 TCGA-FS-A1ZK-06 6 32053871 32053871 C T TNXB Missense_Mutation p.G935E 0.08 possibly_damaging(0.642) TCGA-FS-A1ZK-06 6 32065661 32065661 G A TNXB Silent p.V105V 0.10 TCGA-FS-A1ZK-06 6 32087714 32087714 G A ATF6B Nonsense_Mutation p.Q285* 0.26 TCGA-FS-A1ZK-06 6 32087715 32087715 G A ATF6B Silent p.I284I 0.26 TCGA-FS-A1ZK-06 6 32093947 32093947 G A ATF6B Missense_Mutation p.S142F 0.16 deleterious(0.04) benign(0.005) TCGA-FS-A1ZK-06 6 32118479 32118479 G A PRRT1 Missense_Mutation p.P75L 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.908) TCGA-FS-A1ZK-06 6 32118480 32118480 G A PRRT1 Missense_Mutation p.P75S 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.857) TCGA-FS-A1ZK-06 6 32138758 32138758 G A AGPAT1 Missense_Mutation p.P97L 0.10 deleterious(0.01) possibly_damaging(0.906) TCGA-FS-A1ZK-06 6 32185012 32185012 G A NOTCH4 Silent p.I552I 0.15 TCGA-FS-A1ZK-06 6 32187406 32187406 C T NOTCH4 Silent p.L491L 0.11 TCGA-FS-A1ZK-06 6 32188373 32188373 G A NOTCH4 Missense_Mutation p.P323L 0.17 tolerated(0.09) benign(0.345) TCGA-FS-A1ZK-06 6 32811717 32811717 G A PSMB8 Silent p.L19L 0.12 TCGA-FS-A1ZK-06 6 32847367 32847367 C T PPP1R2P1 RNA 0.16 TCGA-FS-A1ZK-06 6 33154559 33154559 G A COL11A2 Nonsense_Mutation p.Q215* 0.07 TCGA-FS-A1ZK-06 6 33423517 33423517 G A ZBTB9 Missense_Mutation p.E214K 0.14 deleterious(0.03) benign(0.283) TCGA-FS-A1ZK-06 6 34508834 34508834 C T SPDEF Silent p.S187S 0.17 TCGA-FS-A1ZK-06 6 34823398 34823398 C T UHRF1BP1 Silent p.V346V 0.18 TCGA-FS-A1ZK-06 6 35480454 35480454 C T TULP1 Missense_Mutation p.E21K 0.14 deleterious_low_confidence(0.01) benign(0.223) TCGA-FS-A1ZK-06 6 35747255 35747255 C T CLPSL2 3'UTR 0.33 TCGA-FS-A1ZK-06 6 35763630 35763630 C T CLPS Missense_Mutation p.E29K 0.16 tolerated(0.11) benign(0.446) TCGA-FS-A1ZK-06 6 35773696 35773696 C T LHFPL5 Silent p.P83P 0.15 TCGA-FS-A1ZK-06 6 35825091 35825091 G A SRPK1 Silent p.L523L 0.18 TCGA-FS-A1ZK-06 6 36334473 36334473 C T ETV7 Silent p.Q325Q 0.14 TCGA-FS-A1ZK-06 6 38840747 38840747 G A DNAH8 Missense_Mutation p.V2218I 0.17 probably_damaging(0.999) TCGA-FS-A1ZK-06 6 39267263 39267263 C T KCNK17 Missense_Mutation p.M313I 0.12 tolerated_low_confidence(0.29) benign(0.001) TCGA-FS-A1ZK-06 6 40400350 40400350 G A LRFN2 Missense_Mutation p.S168F 0.19 deleterious(0) possibly_damaging(0.905) TCGA-FS-A1ZK-06 6 40400382 40400382 G A LRFN2 Silent p.S157S 0.18 TCGA-FS-A1ZK-06 6 41121741 41121741 T G TREML1 Missense_Mutation p.D44A 0.12 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZK-06 6 41121742 41121742 C T TREML1 Missense_Mutation p.D44N 0.11 tolerated(0.09) probably_damaging(0.99) TCGA-FS-A1ZK-06 6 41318576 41318576 G A NCR2 Missense_Mutation p.D269N 0.08 tolerated_low_confidence(1) benign(0) TCGA-FS-A1ZK-06 6 41558050 41558050 C T FOXP4 Missense_Mutation p.R467W 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 6 41654886 41654886 T C TFEB Missense_Mutation p.N250S 0.13 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 6 41710162 41710162 G A PGC Silent p.F171F 0.18 TCGA-FS-A1ZK-06 6 41909260 41909260 G A CCND3 Missense_Mutation p.S43F 0.13 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZK-06 6 42141304 42141304 G A GUCA1A 5'UTR 0.15 TCGA-FS-A1ZK-06 6 42582840 42582840 T C UBR2 Silent p.G339G 0.22 TCGA-FS-A1ZK-06 6 42832752 42832752 C T GLTSCR1L Silent p.G936G 0.16 TCGA-FS-A1ZK-06 6 42934388 42934388 C T PEX6 Missense_Mutation p.G657S 0.15 tolerated(0.14) benign(0.013) TCGA-FS-A1ZK-06 6 43034148 43034148 C T KLC4 Missense_Mutation p.R244C 0.19 deleterious(0.02) possibly_damaging(0.556) TCGA-FS-A1ZK-06 6 43041663 43041663 C T KLC4 Missense_Mutation p.S608F 0.14 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A1ZK-06 6 43099757 43099757 C T PTK7 Silent p.P280P 0.16 TCGA-FS-A1ZK-06 6 43146877 43146877 C T SRF Silent p.T492T 0.16 TCGA-FS-A1ZK-06 6 43154031 43154031 C T CUL9 Silent p.F363F 0.11 TCGA-FS-A1ZK-06 6 43225664 43225664 C T TTBK1 Missense_Mutation p.P326S 0.11 possibly_damaging(0.901) TCGA-FS-A1ZK-06 6 43226883 43226883 C T TTBK1 Missense_Mutation p.P375L 0.15 possibly_damaging(0.87) TCGA-FS-A1ZK-06 6 43322651 43322651 G A ZNF318 Silent p.T807T 0.18 TCGA-FS-A1ZK-06 6 43473457 43473457 C T TJAP1 Missense_Mutation p.S513F 0.13 tolerated(0.07) benign(0.001) TCGA-FS-A1ZK-06 6 43968718 43968718 G A C6orf223 Intron 0.14 TCGA-FS-A1ZK-06 6 43968723 43968723 G A C6orf223 Intron 0.12 TCGA-FS-A1ZK-06 6 44149035 44149035 G A CAPN11 Nonsense_Mutation p.W639* 0.20 TCGA-FS-A1ZK-06 6 45480082 45480082 C T RUNX2 Missense_Mutation p.P320L 0.18 deleterious(0.02) possibly_damaging(0.527) TCGA-FS-A1ZK-06 6 45514872 45514872 C T RUNX2 Missense_Mutation p.P466S 0.16 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 6 46660298 46660298 C T TDRD6 Missense_Mutation p.A1478V 0.18 tolerated(0.27) benign(0.007) TCGA-FS-A1ZK-06 6 46665773 46665773 C T TDRD6 Silent p.N2070N 0.14 TCGA-FS-A1ZK-06 6 46787321 46787321 G A MEP1A Missense_Mutation p.G146R 0.20 tolerated(0.4) benign(0.232) TCGA-FS-A1ZK-06 6 46787396 46787396 G A MEP1A Missense_Mutation p.D171N 0.13 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 6 46996787 46996787 C T GPR110 Missense_Mutation p.G4E 0.21 tolerated_low_confidence(0.88) benign(0.081) TCGA-FS-A1ZK-06 6 46996788 46996788 C T GPR110 Missense_Mutation p.G4R 0.21 tolerated_low_confidence(0.69) benign(0.004) TCGA-FS-A1ZK-06 6 47202494 47202494 G A TNFRSF21 Silent p.F550F 0.15 TCGA-FS-A1ZK-06 6 47576991 47576991 C T CD2AP Nonsense_Mutation p.Q589* 0.17 TCGA-FS-A1ZK-06 6 47649845 47649845 G A GPR111 Missense_Mutation p.G517E 0.23 tolerated(0.28) probably_damaging(0.987) TCGA-FS-A1ZK-06 6 47680130 47680130 C T GPR115 Missense_Mutation p.P113L 0.11 tolerated(0.18) benign(0.073) TCGA-FS-A1ZK-06 6 49754364 49754364 C T PGK2 Silent p.V179V 0.20 TCGA-FS-A1ZK-06 6 52869951 52869951 C T ICK Missense_Mutation p.R632Q 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1ZK-06 6 52874239 52874239 G A ICK Missense_Mutation p.S540L 0.12 tolerated(0.28) benign(0.044) TCGA-FS-A1ZK-06 6 53707025 53707025 G A LRRC1 Missense_Mutation p.E93K 0.17 deleterious(0) benign(0.119) TCGA-FS-A1ZK-06 6 54806377 54806377 C T FAM83B Missense_Mutation p.P870S 0.15 tolerated(0.78) benign(0.004) TCGA-FS-A1ZK-06 6 55300332 55300332 A G HMGCLL1 3'UTR 0.29 TCGA-FS-A1ZK-06 6 56335074 56335074 G A DST Missense_Mutation p.P4820L 0.14 probably_damaging(1) TCGA-FS-A1ZK-06 6 56482908 56482908 G A DST Intron 0.15 TCGA-FS-A1ZK-06 6 69772857 69772857 G A BAI3 Missense_Mutation p.V789M 0.94 tolerated(0.08) possibly_damaging(0.845) TCGA-FS-A1ZK-06 6 7374037 7374037 C T CAGE1 Missense_Mutation p.E339K 0.18 deleterious(0.01) probably_damaging(0.953) TCGA-FS-A1ZK-06 6 7579632 7579632 C T DSP Missense_Mutation p.S1070F 0.18 probably_damaging(0.987) TCGA-FS-A1ZK-06 6 7580387 7580387 G A DSP Missense_Mutation p.D1322N 0.15 possibly_damaging(0.772) TCGA-FS-A1ZK-06 6 7581101 7581101 C T DSP Nonsense_Mutation p.Q1560* 0.15 TCGA-FS-A1ZK-06 6 7584736 7584736 G T DSP Missense_Mutation p.G2414V 0.20 probably_damaging(1) TCGA-FS-A1ZK-06 6 7585215 7585215 G C DSP Missense_Mutation p.G2574R 0.12 probably_damaging(0.946) TCGA-FS-A1ZK-06 6 75858113 75858113 C T COL12A1 Silent p.K1416K 0.41 TCGA-FS-A1ZK-06 6 7585916 7585916 C T DSP Silent p.S2807S 0.13 TCGA-FS-A1ZK-06 6 76022585 76022585 C T FILIP1 Missense_Mutation p.R988K 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZK-06 6 76551093 76551093 C T MYO6 Missense_Mutation p.R272W 0.38 deleterious(0) unknown(0) TCGA-FS-A1ZK-06 6 83810447 83810447 C T DOPEY1 Silent p.Y54Y 0.38 TCGA-FS-A1ZK-06 6 83810448 83810448 C T DOPEY1 Nonsense_Mutation p.Q55* 0.39 TCGA-FS-A1ZK-06 6 84234162 84234162 C T PRSS35 Silent p.L334L 0.48 TCGA-FS-A1ZK-06 6 88144610 88144610 G A C6ORF165 Missense_Mutation p.E445K 0.28 tolerated(0.17) benign(0.062) TCGA-FS-A1ZK-06 6 88227908 88227908 G A RARS2 Missense_Mutation p.S497L 0.33 tolerated(0.11) possibly_damaging(0.643) TCGA-FS-A1ZK-06 6 89910935 89910935 A T GABRR1 Missense_Mutation p.S75T 0.36 tolerated(0.59) benign(0.361) TCGA-FS-A1ZK-06 6 90397860 90397860 G A MDN1 Silent p.F3764F 0.47 TCGA-FS-A1ZK-06 6 90660621 90660621 C T BACH2 Missense_Mutation p.V402M 0.49 tolerated(0.32) benign(0.008) TCGA-FS-A1ZK-06 7 100348286 100348286 C T ZAN Nonsense_Mutation p.Q430* 0.23 TCGA-FS-A1ZK-06 7 100382454 100382454 C T ZAN Missense_Mutation p.P2277S 0.47 unknown(0) TCGA-FS-A1ZK-06 7 100679002 100679002 A G MUC17 Silent p.S1435S 0.38 TCGA-FS-A1ZK-06 7 100686884 100686884 C T MUC17 Missense_Mutation p.P4063S 0.44 benign(0) TCGA-FS-A1ZK-06 7 100839346 100839346 G A MOGAT3 Missense_Mutation p.P303S 0.58 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 7 1024668 1024668 G A CYP2W1 Silent p.R140R 0.09 TCGA-FS-A1ZK-06 7 103185575 103185575 G A RELN Silent p.F2173F 0.44 TCGA-FS-A1ZK-06 7 103216024 103216024 C T RELN Missense_Mutation p.G1425E 0.37 tolerated(0.19) possibly_damaging(0.511) TCGA-FS-A1ZK-06 7 103236980 103236980 G C RELN Silent p.L1154L 0.46 TCGA-FS-A1ZK-06 7 1037314 1037314 G A C7orf50 Missense_Mutation p.P178S 0.50 tolerated(0.79) benign(0.001) TCGA-FS-A1ZK-06 7 104752452 104752452 C T KMT2E Missense_Mutation p.P1417S 0.52 tolerated_low_confidence(0.88) benign(0.004) TCGA-FS-A1ZK-06 7 1097763 1097763 C T GPR146 Silent p.L204L 0.14 TCGA-FS-A1ZK-06 7 112724432 112724432 G C GPR85 Missense_Mutation p.I115M 0.33 deleterious(0) possibly_damaging(0.556) TCGA-FS-A1ZK-06 7 1131270 1131270 G A GPER1 5'UTR 0.09 TCGA-FS-A1ZK-06 7 11468645 11468645 G A THSD7A Missense_Mutation p.R1058C 0.22 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 7 117182159 117182159 G A CFTR Silent p.E402E 0.41 TCGA-FS-A1ZK-06 7 117182160 117182160 G A CFTR Missense_Mutation p.E403K 0.39 tolerated(0.12) benign(0.054) TCGA-FS-A1ZK-06 7 120591192 120591192 C T ING3 Intron 0.41 TCGA-FS-A1ZK-06 7 120591193 120591193 C T ING3 Intron 0.41 TCGA-FS-A1ZK-06 7 121651385 121651385 C T PTPRZ1 Missense_Mutation p.S762F 0.50 tolerated_low_confidence(0.05) benign(0.013) TCGA-FS-A1ZK-06 7 122019443 122019443 G A CADPS2 Silent p.I1122I 0.28 TCGA-FS-A1ZK-06 7 122821088 122821088 G A SLC13A1 Missense_Mutation p.S56L 0.34 deleterious(0) possibly_damaging(0.49) TCGA-FS-A1ZK-06 7 123594331 123594331 G A SPAM1 Missense_Mutation p.G236E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 7 134889048 134889048 G A WDR91 Missense_Mutation p.S288L 0.34 tolerated(0.29) benign(0.002) TCGA-FS-A1ZK-06 7 135418972 135418972 G A FAM180A Silent p.T91T 0.32 TCGA-FS-A1ZK-06 7 138602377 138602377 G A KIAA1549 Silent p.P665P 0.40 TCGA-FS-A1ZK-06 7 140156439 140156439 G A MKRN1 Intron 0.48 TCGA-FS-A1ZK-06 7 140404669 140404669 C T NDUFB2 Missense_Mutation p.P85S 0.46 tolerated(0.09) benign(0.145) TCGA-FS-A1ZK-06 7 141463955 141463955 T G TAS2R3 5'UTR 0.42 TCGA-FS-A1ZK-06 7 142606723 142606723 G A TRPV5 Missense_Mutation p.R610C 0.48 tolerated(0.07) benign(0.117) TCGA-FS-A1ZK-06 7 143701692 143701692 C T OR6B1 Silent p.I201I 0.46 TCGA-FS-A1ZK-06 7 143748115 143748115 G A OR2A5 Silent p.L207L 0.44 TCGA-FS-A1ZK-06 7 143748222 143748222 C T OR2A5 Missense_Mutation p.S243F 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZK-06 7 143807593 143807593 G A OR2A2 Silent p.R306R 0.47 TCGA-FS-A1ZK-06 7 148701261 148701261 C T PDIA4 Silent p.K521K 0.34 TCGA-FS-A1ZK-06 7 149490420 149490420 G A SSPO RNA 0.26 TCGA-FS-A1ZK-06 7 150325516 150325516 C T GIMAP6 Missense_Mutation p.G57E 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 7 150554425 150554425 G A AOC1 Silent p.G289G 0.44 TCGA-FS-A1ZK-06 7 150648756 150648756 C T KCNH2 Silent p.E575E 0.48 TCGA-FS-A1ZK-06 7 1516462 1516462 G A INTS1 Silent p.I1677I 0.12 TCGA-FS-A1ZK-06 7 1522326 1522326 G A INTS1 Nonsense_Mutation p.Q1187* 0.09 TCGA-FS-A1ZK-06 7 15240949 15240949 A G AGMO Silent p.V433V 0.45 TCGA-FS-A1ZK-06 7 154747269 154747269 G A PAXIP1 Silent p.F874F 0.29 TCGA-FS-A1ZK-06 7 155596398 155596398 C T SHH Silent p.S195S 0.42 TCGA-FS-A1ZK-06 7 158827272 158827272 G A VIPR2 Silent p.I293I 0.43 TCGA-FS-A1ZK-06 7 16649313 16649313 G A ANKMY2 Missense_Mutation p.P275L 0.39 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZK-06 7 16745838 16745838 C T BZW2 3'UTR 0.35 TCGA-FS-A1ZK-06 7 16745839 16745839 C T BZW2 3'UTR 0.36 TCGA-FS-A1ZK-06 7 20198181 20198181 G A MACC1 Silent p.V601V 0.23 TCGA-FS-A1ZK-06 7 20682906 20682906 G A ABCB5 Silent p.R138R 0.34 TCGA-FS-A1ZK-06 7 20784994 20784994 C T ABCB5 Missense_Mutation p.P1121L 0.32 deleterious(0.03) benign(0.005) TCGA-FS-A1ZK-06 7 2108866 2108866 G A MAD1L1 Missense_Mutation p.A394V 0.13 tolerated(1) benign(0.01) TCGA-FS-A1ZK-06 7 21657364 21657364 G A DNAH11 Missense_Mutation p.R1413K 0.31 possibly_damaging(0.752) TCGA-FS-A1ZK-06 7 21737789 21737789 C T DNAH11 Silent p.F2053F 0.24 TCGA-FS-A1ZK-06 7 21805179 21805179 G A DNAH11 Missense_Mutation p.R3032K 0.26 benign(0.024) TCGA-FS-A1ZK-06 7 2274925 2274925 G A FTSJ2 Silent p.F191F 0.08 TCGA-FS-A1ZK-06 7 2297013 2297013 G A SNX8 Missense_Mutation p.S374F 0.23 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZK-06 7 2473276 2473276 C T CHST12 Silent p.I334I 0.08 TCGA-FS-A1ZK-06 7 24902884 24902884 C T OSBPL3 Missense_Mutation p.E269K 0.42 tolerated(0.37) benign(0.08) TCGA-FS-A1ZK-06 7 25182418 25182418 C G C7orf31 Missense_Mutation p.E234Q 0.49 tolerated(0.15) possibly_damaging(0.65) TCGA-FS-A1ZK-06 7 2752035 2752035 G A AMZ1 Nonsense_Mutation p.W340* 0.10 TCGA-FS-A1ZK-06 7 2946340 2946340 G A CARD11 Missense_Mutation p.R1133C 0.17 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZK-06 7 2963889 2963889 A G CARD11 Missense_Mutation p.F640L 0.07 tolerated(0.2) benign(0.005) TCGA-FS-A1ZK-06 7 2987262 2987262 T A CARD11 Missense_Mutation p.D56V 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 7 31378726 31378726 C T NEUROD6 Missense_Mutation p.G53R 0.31 tolerated(0.47) benign(0.005) TCGA-FS-A1ZK-06 7 31682335 31682335 G A CCDC129 Missense_Mutation p.G477R 0.46 tolerated(0.31) benign(0.027) TCGA-FS-A1ZK-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.51 TCGA-FS-A1ZK-06 7 35293225 35293225 A G TBX20 Missense_Mutation p.F3L 0.54 tolerated_low_confidence(0.55) benign(0.004) TCGA-FS-A1ZK-06 7 36616207 36616207 T G AOAH Silent p.R332R 0.34 TCGA-FS-A1ZK-06 7 38398154 38398154 C T TRGV3 Missense_Mutation p.E105K 0.35 tolerated(0.16) benign(0.136) TCGA-FS-A1ZK-06 7 4185409 4185409 G A SDK1 Silent p.V1428V 0.11 TCGA-FS-A1ZK-06 7 4273011 4273011 G A SDK1 Silent p.A1984A 0.10 TCGA-FS-A1ZK-06 7 4277403 4277403 G A SDK1 Silent p.K2039K 0.11 TCGA-FS-A1ZK-06 7 44880610 44880610 A T H2AFV Missense_Mutation p.F28Y 0.42 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZK-06 7 47894497 47894497 G A PKD1L1 Silent p.P1614P 0.45 TCGA-FS-A1ZK-06 7 48317811 48317811 G A ABCA13 Missense_Mutation p.M2340I 0.37 benign(0) TCGA-FS-A1ZK-06 7 48319316 48319316 G A ABCA13 Missense_Mutation p.R2842K 0.37 benign(0.01) TCGA-FS-A1ZK-06 7 4856006 4856006 C T RADIL Missense_Mutation p.E607K 0.39 deleterious(0.02) probably_damaging(0.97) TCGA-FS-A1ZK-06 7 4856095 4856095 G A RADIL Missense_Mutation p.S577F 0.08 deleterious(0.04) possibly_damaging(0.713) TCGA-FS-A1ZK-06 7 4917288 4917288 C G RADIL Missense_Mutation p.K161N 0.06 deleterious(0.03) probably_damaging(0.981) TCGA-FS-A1ZK-06 7 51092834 51092834 G A COBL Missense_Mutation p.S1247F 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 7 51258552 51258552 C T COBL Missense_Mutation p.R227K 0.27 tolerated(1) benign(0.047) TCGA-FS-A1ZK-06 7 53103702 53103702 C T POM121L12 Missense_Mutation p.S113F 0.21 deleterious(0) probably_damaging(0.919) TCGA-FS-A1ZK-06 7 5391481 5391481 G A TNRC18 Silent p.F1813F 0.10 TCGA-FS-A1ZK-06 7 55229314 55229314 C T EGFR Missense_Mutation p.L541F 0.25 tolerated(0.2) benign(0) TCGA-FS-A1ZK-06 7 5633104 5633104 C T FSCN1 Silent p.L179L 0.19 TCGA-FS-A1ZK-06 7 5764962 5764962 A T RNF216 Missense_Mutation p.F499L 0.04 tolerated(0.06) possibly_damaging(0.547) TCGA-FS-A1ZK-06 7 590155 590155 G A PRKAR1B Missense_Mutation p.P353L 0.32 tolerated(0.08) benign(0.349) TCGA-FS-A1ZK-06 7 6027010 6027010 G A PMS2 Silent p.I462I 0.06 TCGA-FS-A1ZK-06 7 6210259 6210259 T A CYTH3 Nonsense_Mutation p.K244* 0.07 TCGA-FS-A1ZK-06 7 62758735 62758735 G A ZNF733P RNA 0.08 TCGA-FS-A1ZK-06 7 63720636 63720636 C T ZNF679 Missense_Mutation p.S26F 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 7 6439791 6439791 C T RAC1 Missense_Mutation p.P106L 0.05 deleterious(0.01) possibly_damaging(0.52) TCGA-FS-A1ZK-06 7 6731942 6731942 G A ZNF12 Missense_Mutation p.R211C 0.09 deleterious(0.01) benign(0.393) TCGA-FS-A1ZK-06 7 7457497 7457497 C T COL28A1 Missense_Mutation p.G710E 0.09 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 7 7472283 7472283 C T COL28A1 Missense_Mutation p.D637N 0.05 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZK-06 7 7480434 7480434 G A COL28A1 Missense_Mutation p.P570L 0.16 tolerated(0.06) possibly_damaging(0.876) TCGA-FS-A1ZK-06 7 751017 751017 C T PRKAR1B Silent p.K42K 0.08 TCGA-FS-A1ZK-06 7 76871183 76871183 G A CCDC146 Missense_Mutation p.E139K 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A1ZK-06 7 81598265 81598265 G A CACNA2D1 Missense_Mutation p.S778L 0.47 tolerated(0.17) benign(0.245) TCGA-FS-A1ZK-06 7 82453677 82453677 G A PCLO Missense_Mutation p.P4824L 0.34 unknown(0) TCGA-FS-A1ZK-06 7 82544134 82544134 C T PCLO Missense_Mutation p.D4390N 0.47 unknown(0) TCGA-FS-A1ZK-06 7 82584366 82584366 G A PCLO Missense_Mutation p.S1968L 0.42 unknown(0) TCGA-FS-A1ZK-06 7 82763746 82763746 A T PCLO Silent p.P1040P 0.43 TCGA-FS-A1ZK-06 7 84666346 84666346 G A SEMA3D Silent p.S350S 0.45 TCGA-FS-A1ZK-06 7 86522401 86522401 A C KIAA1324L Missense_Mutation p.W901G 0.32 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZK-06 7 87042978 87042978 C T ABCB4 Missense_Mutation p.R913K 0.38 tolerated(0.74) benign(0.004) TCGA-FS-A1ZK-06 7 92098843 92098843 C T ERVW-1 Missense_Mutation p.E285K 0.38 tolerated(0.08) benign(0.268) TCGA-FS-A1ZK-06 7 92138668 92138668 G A PEX1 Missense_Mutation p.P549S 0.36 deleterious(0.03) possibly_damaging(0.78) TCGA-FS-A1ZK-06 7 94051224 94051224 T G COL1A2 Missense_Mutation p.F788C 0.29 unknown(0) TCGA-FS-A1ZK-06 7 94163044 94163044 G A CASD1 Missense_Mutation p.M186I 0.32 tolerated(0.44) benign(0.002) TCGA-FS-A1ZK-06 7 99247856 99247856 C T CYP3A5 Splice_Site p.X418_splice 0.37 TCGA-FS-A1ZK-06 7 99355642 99355642 C T CYP3A4 3'UTR 0.44 TCGA-FS-A1ZK-06 7 99627572 99627572 C T ZKSCAN1 Silent p.S223S 0.37 TCGA-FS-A1ZK-06 8 101083691 101083691 G A RGS22 Missense_Mutation p.P167L 0.16 deleterious(0) possibly_damaging(0.851) TCGA-FS-A1ZK-06 8 101243404 101243404 C G SPAG1 Missense_Mutation p.L626V 0.14 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZK-06 8 104340522 104340522 G A FZD6 Silent p.L473L 0.19 TCGA-FS-A1ZK-06 8 10465835 10465835 G A RP1L1 Silent p.L1925L 0.27 TCGA-FS-A1ZK-06 8 104898211 104898211 C T RIMS2 Missense_Mutation p.P462S 0.20 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-FS-A1ZK-06 8 105367188 105367188 C T DCSTAMP Silent p.F371F 0.29 TCGA-FS-A1ZK-06 8 110441657 110441657 G A PKHD1L1 Missense_Mutation p.G1030E 0.10 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZK-06 8 110980497 110980497 C T KCNV1 Silent p.K441K 0.36 TCGA-FS-A1ZK-06 8 113364645 113364645 C T CSMD3 Silent p.Q2085Q 0.15 TCGA-FS-A1ZK-06 8 113599463 113599463 A C CSMD3 Silent p.A1239A 0.11 TCGA-FS-A1ZK-06 8 113960098 113960098 C T CSMD3 Missense_Mutation p.G477R 0.08 tolerated(0.5) probably_damaging(0.924) TCGA-FS-A1ZK-06 8 116426751 116426751 T A TRPS1 Nonsense_Mutation p.K1129* 0.23 TCGA-FS-A1ZK-06 8 118184920 118184920 G A SLC30A8 Silent p.%3D 0.17 TCGA-FS-A1ZK-06 8 11831451 11831451 G A DEFB136 Missense_Mutation p.H78Y 0.22 benign(0.291) TCGA-FS-A1ZK-06 8 120101955 120101955 G A COLEC10 Missense_Mutation p.G62E 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 8 121239556 121239556 G A COL14A1 Missense_Mutation p.S701N 0.13 tolerated(0.23) possibly_damaging(0.794) TCGA-FS-A1ZK-06 8 121383402 121383402 G A COL14A1 Missense_Mutation p.D1775N 0.13 tolerated(0.4) possibly_damaging(0.528) TCGA-FS-A1ZK-06 8 124195459 124195459 G A FAM83A Nonsense_Mutation p.W121* 0.18 TCGA-FS-A1ZK-06 8 124659227 124659227 A G KLHL38 Missense_Mutation p.F460L 0.17 tolerated(0.24) benign(0.004) TCGA-FS-A1ZK-06 8 130772813 130772813 A C GSDMC Missense_Mutation p.D233E 0.37 tolerated(0.52) possibly_damaging(0.456) TCGA-FS-A1ZK-06 8 133048632 133048632 G C OC90 Intron 0.10 TCGA-FS-A1ZK-06 8 133051336 133051336 G A OC90 Silent p.T164T 0.27 TCGA-FS-A1ZK-06 8 133899220 133899220 C T TG Missense_Mutation p.P535S 0.15 tolerated(0.66) benign(0.05) TCGA-FS-A1ZK-06 8 133900623 133900623 C T TG Silent p.P857P 0.12 TCGA-FS-A1ZK-06 8 139164516 139164516 T G FAM135B Missense_Mutation p.E734D 0.08 tolerated(0.07) benign(0.055) TCGA-FS-A1ZK-06 8 139674289 139674289 C T COL22A1 Missense_Mutation p.G1075D 0.10 unknown(0) TCGA-FS-A1ZK-06 8 141461203 141461203 C T TRAPPC9 Silent p.K188K 0.17 TCGA-FS-A1ZK-06 8 141461204 141461204 T A TRAPPC9 Missense_Mutation p.K188M 0.18 tolerated(0.09) possibly_damaging(0.66) TCGA-FS-A1ZK-06 8 141874443 141874443 C T PTK2 Missense_Mutation p.D140N 0.22 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 8 141889609 141889609 C T PTK2 Missense_Mutation p.R108K 0.25 tolerated(0.55) benign(0.445) TCGA-FS-A1ZK-06 8 142146754 142146754 C T DENND3 Silent p.S3S 0.11 TCGA-FS-A1ZK-06 8 143623563 143623563 G A BAI1 Missense_Mutation p.G1323E 0.14 tolerated(0.08) possibly_damaging(0.622) TCGA-FS-A1ZK-06 8 143994088 143994088 C T CYP11B2 Missense_Mutation p.R419K 0.16 tolerated(0.07) possibly_damaging(0.528) TCGA-FS-A1ZK-06 8 143999085 143999085 C T CYP11B2 Missense_Mutation p.E58K 0.30 tolerated(0.14) benign(0.219) TCGA-FS-A1ZK-06 8 143999086 143999086 C T CYP11B2 Silent p.R57R 0.32 TCGA-FS-A1ZK-06 8 144557690 144557690 G A ZC3H3 Missense_Mutation p.P594L 0.26 deleterious(0.02) probably_damaging(0.979) TCGA-FS-A1ZK-06 8 144893232 144893232 G A SCRIB Silent p.L373L 0.18 TCGA-FS-A1ZK-06 8 144899816 144899816 G A PUF60 Silent p.L318L 0.34 TCGA-FS-A1ZK-06 8 144941802 144941802 G A EPPK1 Missense_Mutation p.R1874C 0.17 benign(0.001) TCGA-FS-A1ZK-06 8 144946741 144946741 G T EPPK1 Silent p.A227A 0.17 TCGA-FS-A1ZK-06 8 145535766 145535766 C T HSF1 Silent p.S326S 0.17 TCGA-FS-A1ZK-06 8 145579751 145579751 T G FBXL6 Missense_Mutation p.Q450P 0.33 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 8 146015848 146015848 C A RPL8 Silent p.V169V 0.13 TCGA-FS-A1ZK-06 8 146016825 146016825 G A RPL8 Silent p.I112I 0.10 TCGA-FS-A1ZK-06 8 146278135 146278135 C T C8orf33 Missense_Mutation p.A57V 0.10 tolerated(0.33) benign(0.009) TCGA-FS-A1ZK-06 8 146279551 146279551 C T C8orf33 3'UTR 0.24 TCGA-FS-A1ZK-06 8 1765429 1765429 C T MIR596 RNA 0.27 TCGA-FS-A1ZK-06 8 21550734 21550734 G A GFRA2 3'UTR 0.32 TCGA-FS-A1ZK-06 8 21938632 21938632 C T DMTN Silent p.P344P 0.25 TCGA-FS-A1ZK-06 8 22275267 22275267 C T SLC39A14 Silent p.I417I 0.26 TCGA-FS-A1ZK-06 8 22370923 22370923 C T PPP3CC Nonsense_Mutation p.R250* 0.36 TCGA-FS-A1ZK-06 8 22547953 22547953 G A EGR3 3'UTR 0.64 TCGA-FS-A1ZK-06 8 27455997 27455997 C T CLU Silent p.Q440Q 0.33 TCGA-FS-A1ZK-06 8 27462528 27462528 G A CLU Missense_Mutation p.L248F 0.33 tolerated(1) benign(0.001) TCGA-FS-A1ZK-06 8 3087615 3087615 C G CSMD1 Missense_Mutation p.C1431S 0.22 possibly_damaging(0.882) TCGA-FS-A1ZK-06 8 32453407 32453407 C T NRG1 Silent p.V54V 0.23 TCGA-FS-A1ZK-06 8 33406360 33406360 G A RNF122 Missense_Mutation p.R127C 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 8 33454829 33454829 G A DUSP26 Missense_Mutation p.L69F 0.47 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZK-06 8 38832575 38832575 G A HTRA4 Silent p.R164R 0.23 TCGA-FS-A1ZK-06 8 41164341 41164341 C T SFRP1 Intron 0.24 TCGA-FS-A1ZK-06 8 41577322 41577322 G A ANK1 Missense_Mutation p.R355W 0.26 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 8 42586909 42586909 C A CHRNB3 Nonsense_Mutation p.C153* 0.38 TCGA-FS-A1ZK-06 8 52320734 52320734 G A PXDNL Silent p.I1150I 0.23 TCGA-FS-A1ZK-06 8 54142080 54142080 G A OPRK1 Missense_Mutation p.A307V 0.38 tolerated(0.55) probably_damaging(0.957) TCGA-FS-A1ZK-06 8 54852200 54852200 G A RGS20 Missense_Mutation p.G192D 0.28 tolerated(0.32) benign(0.005) TCGA-FS-A1ZK-06 8 55541479 55541479 A G RP1 Silent p.S1679S 0.42 TCGA-FS-A1ZK-06 8 56663611 56663611 A T TMEM68 Missense_Mutation p.V200D 0.16 deleterious(0) probably_damaging(0.977) TCGA-FS-A1ZK-06 8 56699515 56699515 G A TGS1 Missense_Mutation p.S353N 0.19 tolerated(0.15) benign(0.004) TCGA-FS-A1ZK-06 8 59409365 59409365 C T CYP7A1 Missense_Mutation p.E236K 0.15 tolerated(0.2) possibly_damaging(0.692) TCGA-FS-A1ZK-06 8 59720828 59720828 C T TOX Missense_Mutation p.G465R 0.19 deleterious(0.01) possibly_damaging(0.823) TCGA-FS-A1ZK-06 8 66963868 66963868 G A DNAJC5B Missense_Mutation p.G29E 0.13 deleterious(0.04) benign(0.403) TCGA-FS-A1ZK-06 8 67040674 67040674 G A TRIM55 Missense_Mutation p.E102K 0.11 deleterious(0) possibly_damaging(0.69) TCGA-FS-A1ZK-06 8 67086797 67086797 C T TRIM55 Missense_Mutation p.S539F 0.11 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-FS-A1ZK-06 8 67547158 67547158 G A VCPIP1 Nonsense_Mutation p.R1083* 0.16 TCGA-FS-A1ZK-06 8 70971050 70971050 C T PRDM14 Missense_Mutation p.R404K 0.20 tolerated(0.06) probably_damaging(0.992) TCGA-FS-A1ZK-06 8 70980503 70980503 C T PRDM14 Missense_Mutation p.E292K 0.12 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZK-06 8 72966005 72966005 G A TRPA1 Missense_Mutation p.R543C 0.14 deleterious(0) possibly_damaging(0.636) TCGA-FS-A1ZK-06 8 73993429 73993429 C T SBSPON Silent p.G78G 0.11 TCGA-FS-A1ZK-06 8 73993430 73993430 C T SBSPON Missense_Mutation p.G78E 0.12 deleterious(0.05) probably_damaging(0.931) TCGA-FS-A1ZK-06 8 77617776 77617776 G A ZFHX4 Missense_Mutation p.E485K 0.21 possibly_damaging(0.502) TCGA-FS-A1ZK-06 8 77764947 77764947 G A ZFHX4 Silent p.K1930K 0.17 TCGA-FS-A1ZK-06 8 77765793 77765793 C T ZFHX4 Silent p.P2212P 0.18 TCGA-FS-A1ZK-06 8 77766314 77766314 G A ZFHX4 Missense_Mutation p.G2386E 0.13 probably_damaging(0.998) TCGA-FS-A1ZK-06 8 86386616 86386616 G A CA2 Missense_Mutation p.G139R 0.15 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZK-06 8 87229720 87229720 G A SLC7A13 Silent p.P386P 0.18 TCGA-FS-A1ZK-06 8 87242302 87242302 C T SLC7A13 Missense_Mutation p.E69K 0.19 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 8 87588331 87588331 C T CNGB3 Missense_Mutation p.E711K 0.21 tolerated(0.72) benign(0.015) TCGA-FS-A1ZK-06 8 95680371 95680371 C T ESRP1 Missense_Mutation p.L376F 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 8 95777444 95777444 C T DPY19L4 Missense_Mutation p.L302F 0.18 deleterious(0) probably_damaging(0.958) TCGA-FS-A1ZK-06 8 99019816 99019816 G A MATN2 Silent p.G520G 0.14 TCGA-FS-A1ZK-06 8 99045812 99045812 G A MATN2 Missense_Mutation p.D914N 0.21 tolerated_low_confidence(0.05) benign(0.032) TCGA-FS-A1ZK-06 9 100132243 100132243 C T CCDC180 Missense_Mutation p.P1454L 0.28 deleterious(0) possibly_damaging(0.851) TCGA-FS-A1ZK-06 9 100132244 100132244 C T CCDC180 Silent p.P1454P 0.30 TCGA-FS-A1ZK-06 9 101589065 101589065 T A GALNT12 Silent p.L191L 0.89 TCGA-FS-A1ZK-06 9 102590329 102590329 C T NR4A3 Missense_Mutation p.P13L 0.33 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZK-06 9 111625832 111625832 G A ACTL7A Silent p.Q410Q 0.88 TCGA-FS-A1ZK-06 9 113173765 113173765 G A SVEP1 Missense_Mutation p.P2076S 0.92 probably_damaging(1) TCGA-FS-A1ZK-06 9 113205957 113205957 G C SVEP1 Missense_Mutation p.P1503A 0.39 possibly_damaging(0.615) TCGA-FS-A1ZK-06 9 114304657 114304657 C T ZNF483 Missense_Mutation p.S481L 0.46 deleterious(0.01) possibly_damaging(0.651) TCGA-FS-A1ZK-06 9 115932877 115932877 G A FKBP15 Silent p.S897S 0.36 TCGA-FS-A1ZK-06 9 116060000 116060000 G A RNF183 Silent p.F155F 0.94 TCGA-FS-A1ZK-06 9 121451 121451 A G CBWD1 3'UTR 0.26 TCGA-FS-A1ZK-06 9 121929406 121929406 C T BRINP1 Missense_Mutation p.E748K 0.41 tolerated(1) possibly_damaging(0.899) TCGA-FS-A1ZK-06 9 123165332 123165332 G A CDK5RAP2 Missense_Mutation p.L1687F 0.33 tolerated(0.09) probably_damaging(0.969) TCGA-FS-A1ZK-06 9 125316009 125316009 C G OR1N2 Silent p.A187A 0.81 TCGA-FS-A1ZK-06 9 126144641 126144641 G A DENND1A Silent p.P700P 0.61 TCGA-FS-A1ZK-06 9 126144642 126144642 G A DENND1A Missense_Mutation p.P700L 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 9 126783392 126783392 G A LHX2 Missense_Mutation p.E248K 0.85 deleterious(0.04) probably_damaging(0.986) TCGA-FS-A1ZK-06 9 130883435 130883435 G A PTGES2 Missense_Mutation p.P375S 0.58 tolerated(0.75) benign(0.001) TCGA-FS-A1ZK-06 9 135277532 135277532 G A TTF1 Missense_Mutation p.S226F 0.79 tolerated_low_confidence(0.74) possibly_damaging(0.831) TCGA-FS-A1ZK-06 9 135771492 135771492 G A TSC1 3'UTR 0.74 TCGA-FS-A1ZK-06 9 136199576 136199576 G A SURF6 Silent p.S138S 0.41 TCGA-FS-A1ZK-06 9 138379983 138379983 C T PPP1R26 Silent p.V1209V 0.85 TCGA-FS-A1ZK-06 9 138516324 138516324 A G GLT6D1 Silent p.H150H 0.18 TCGA-FS-A1ZK-06 9 139273392 139273392 G A SNAPC4 Missense_Mutation p.P963S 0.50 tolerated(0.87) benign(0.004) TCGA-FS-A1ZK-06 9 139910620 139910620 G A ABCA2 Silent p.I1037I 0.45 TCGA-FS-A1ZK-06 9 140093724 140093724 C T TPRN Silent p.R480R 0.40 TCGA-FS-A1ZK-06 9 140093725 140093725 C T TPRN Missense_Mutation p.R480K 0.40 tolerated(0.94) benign(0.008) TCGA-FS-A1ZK-06 9 141012397 141012397 G A CACNA1B Splice_Site p.X1926_splice 1.00 TCGA-FS-A1ZK-06 9 14750232 14750232 C T FREM1 Missense_Mutation p.G1817E 0.27 deleterious(0.02) possibly_damaging(0.718) TCGA-FS-A1ZK-06 9 14801670 14801670 G A FREM1 Missense_Mutation p.S1225F 0.16 deleterious(0) possibly_damaging(0.905) TCGA-FS-A1ZK-06 9 15744360 15744360 C T CCDC171 Silent p.F713F 0.32 TCGA-FS-A1ZK-06 9 17786423 17786423 C T SH3GL2 Missense_Mutation p.R78C 0.45 deleterious(0.03) benign(0.333) TCGA-FS-A1ZK-06 9 18777260 18777260 G A ADAMTSL1 Silent p.R1011R 0.59 TCGA-FS-A1ZK-06 9 19342634 19342634 T G DENND4C Missense_Mutation p.V954G 0.46 tolerated(0.42) benign(0) TCGA-FS-A1ZK-06 9 23762245 23762245 C A ELAVL2 Intron 0.56 TCGA-FS-A1ZK-06 9 26920318 26920318 A C PLAA Missense_Mutation p.S368R 0.35 deleterious(0.01) possibly_damaging(0.857) TCGA-FS-A1ZK-06 9 27950484 27950484 C T LINGO2 Silent p.L62L 0.40 TCGA-FS-A1ZK-06 9 32631360 32631360 G A TAF1L Silent p.S1406S 0.39 TCGA-FS-A1ZK-06 9 33048158 33048158 G A SMU1 Silent p.D463D 0.31 TCGA-FS-A1ZK-06 9 34972419 34972419 G A KIAA1045 Missense_Mutation p.R152K 0.39 tolerated(0.18) probably_damaging(0.994) TCGA-FS-A1ZK-06 9 35093436 35093436 G A PIGO Silent p.F307F 0.34 TCGA-FS-A1ZK-06 9 35711666 35711666 G A TLN1 Nonsense_Mutation p.R1269* 0.30 TCGA-FS-A1ZK-06 9 35825615 35825615 C T FAM221B Missense_Mutation p.G182R 0.25 tolerated(0.54) benign(0.009) TCGA-FS-A1ZK-06 9 35847037 35847037 G A TMEM8B Intron 0.33 TCGA-FS-A1ZK-06 9 36122903 36122903 T A RECK Missense_Mutation p.L926H 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 9 37744757 37744757 G A FRMPD1 Missense_Mutation p.E910K 0.29 tolerated(0.17) benign(0.014) TCGA-FS-A1ZK-06 9 38411496 38411496 G A IGFBPL1 Silent p.A246A 0.33 TCGA-FS-A1ZK-06 9 3937169 3937169 G A GLIS3 Silent p.A577A 0.28 TCGA-FS-A1ZK-06 9 4585528 4585528 C T SLC1A1 Silent p.T515T 0.15 TCGA-FS-A1ZK-06 9 5467884 5467884 C T CD274 3'UTR 0.27 TCGA-FS-A1ZK-06 9 71628097 71628097 G A PRKACG Silent p.I304I 0.21 TCGA-FS-A1ZK-06 9 71628130 71628130 C T PRKACG Silent p.K293K 0.91 TCGA-FS-A1ZK-06 9 73230967 73230967 G A TRPM3 Missense_Mutation p.P783S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZK-06 9 75404142 75404142 G A TMC1 Missense_Mutation p.G378E 0.32 deleterious(0) probably_damaging(0.928) TCGA-FS-A1ZK-06 9 80921351 80921351 G A PSAT1 Silent p.L173L 0.88 TCGA-FS-A1ZK-06 9 88918036 88918036 G A ZCCHC6 Silent p.I1353I 0.41 TCGA-FS-A1ZK-06 9 90586062 90586062 C T CDK20 Silent p.R126R 0.36 TCGA-FS-A1ZK-06 9 94984883 94984883 C T IARS Missense_Mutation p.G1209S 0.41 tolerated_low_confidence(0.07) benign(0.097) TCGA-FS-A1ZK-06 9 95004508 95004508 G A IARS Silent p.T1035T 0.38 TCGA-FS-A1ZK-06 9 99296774 99296774 G A CDC14B Silent p.A226A 0.38 TCGA-FS-A1ZK-06 X 103349732 103349732 C T SLC25A53 Nonsense_Mutation p.W70* 0.75 TCGA-FS-A1ZK-06 X 105137893 105137893 A - NRK Frame_Shift_Del p.E151Kfs*15 0.40 TCGA-FS-A1ZK-06 X 117959676 117959676 C T ZCCHC12 Nonsense_Mutation p.Q157* 0.87 TCGA-FS-A1ZK-06 X 128902303 128902303 G A XPNPEP2 Missense_Mutation p.E623K 0.92 tolerated(0.11) benign(0.003) TCGA-FS-A1ZK-06 X 12906412 12906412 G A TLR7 Missense_Mutation p.E929K 0.91 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZK-06 X 12939932 12939932 G A TLR8 Missense_Mutation p.G925R 0.92 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 X 138623299 138623299 C G F9 Silent p.S114S 0.85 TCGA-FS-A1ZK-06 X 139866474 139866474 G A CDR1 Missense_Mutation p.P20S 0.87 tolerated(0.2) benign(0.188) TCGA-FS-A1ZK-06 X 151130954 151130954 G A GABRE Silent p.I168I 0.86 TCGA-FS-A1ZK-06 X 152482458 152482458 C T MAGEA1 Missense_Mutation p.D185N 0.85 tolerated(0.21) benign(0.097) TCGA-FS-A1ZK-06 X 1761794 1761794 G A ASMT Missense_Mutation p.G337R 0.16 deleterious(0) probably_damaging(1) TCGA-FS-A1ZK-06 X 17745857 17745857 G A NHS Missense_Mutation p.G1190R 0.91 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-FS-A1ZK-06 X 17818801 17818801 C T RAI2 Missense_Mutation p.E444K 0.85 tolerated(1) unknown(0) TCGA-FS-A1ZK-06 X 23956695 23956695 C T CXorf58 Missense_Mutation p.R273W 0.96 tolerated(0.09) probably_damaging(0.971) TCGA-FS-A1ZK-06 X 27998711 27998711 G A DCAF8L1 Silent p.F247F 0.82 TCGA-FS-A1ZK-06 X 27999123 27999123 T A DCAF8L1 Missense_Mutation p.E110V 0.87 tolerated(0.06) benign(0.022) TCGA-FS-A1ZK-06 X 30578040 30578040 G A CXorf21 Missense_Mutation p.P145S 0.85 tolerated(0.52) benign(0.075) TCGA-FS-A1ZK-06 X 3239522 3239522 C T MXRA5 Missense_Mutation p.E1402K 0.73 tolerated(0.16) benign(0.003) TCGA-FS-A1ZK-06 X 37668882 37668882 G A CYBB Silent p.K508K 1.00 TCGA-FS-A1ZK-06 X 41075159 41075159 C T USP9X Missense_Mutation p.T1780I 0.93 deleterious(0) probably_damaging(0.928) TCGA-FS-A1ZK-06 X 41204721 41204721 C T DDX3X Missense_Mutation p.S412F 0.84 deleterious(0) probably_damaging(0.922) TCGA-FS-A1ZK-06 X 41416311 41416311 G A CASK Missense_Mutation p.H594Y 0.90 tolerated_low_confidence(0.3) benign(0.253) TCGA-FS-A1ZK-06 X 46466519 46466519 G T SLC9A7 Silent p.S682S 0.85 TCGA-FS-A1ZK-06 X 47106768 47106768 A T USP11 Missense_Mutation p.Y872F 0.86 deleterious(0.03) benign(0.189) TCGA-FS-A1ZK-06 X 51149989 51149989 C T CXorf67 Missense_Mutation p.P41S 1.00 tolerated(0.09) benign(0.162) TCGA-FS-A1ZK-06 X 54783453 54783453 G A ITIH6 Silent p.F1018F 1.00 TCGA-FS-A1ZK-06 X 54957352 54957352 G A TRO Missense_Mutation p.G1399R 0.94 tolerated_low_confidence(0.16) probably_damaging(0.986) TCGA-FS-A1ZK-06 X 63564991 63564991 G A MTMR8 Missense_Mutation p.R267C 0.87 deleterious(0.01) possibly_damaging(0.823) TCGA-FS-A1ZK-06 X 69262176 69262176 G A AWAT2 Silent p.F236F 0.73 TCGA-FS-A1ZK-06 X 71349749 71349749 G A RGAG4 Missense_Mutation p.P548S 0.93 tolerated_low_confidence(0.16) unknown(0) TCGA-FS-A1ZK-06 X 71802346 71802346 G A PHKA1 Missense_Mutation p.L1134F 0.87 deleterious(0.01) benign(0.421) TCGA-FS-A1ZK-06 X 77300981 77300981 A G ATP7A Missense_Mutation p.I1380V 0.80 tolerated(0.59) benign(0.001) TCGA-FS-A1ZK-06 X 78427122 78427122 G A GPR174 Nonsense_Mutation p.W206* 0.90 TCGA-FS-A1ZK-06 Y 16936239 16936239 C T NLGN4Y Missense_Mutation p.S266F 0.54 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZK-06 Y 23563366 23563366 C T RBMY2EP RNA 1.00 TCGA-FS-A1ZM-06 10 103906857 103906857 C G PPRC1 Missense_Mutation p.L1370V 0.30 tolerated(0.06) benign(0.062) TCGA-FS-A1ZM-06 10 116361657 116361657 C T ABLIM1 Missense_Mutation p.G103E 0.14 deleterious(0) possibly_damaging(0.503) TCGA-FS-A1ZM-06 10 123843922 123843922 C T TACC2 Missense_Mutation p.P636L 0.25 benign(0.002) TCGA-FS-A1ZM-06 10 18276511 18276511 C T SLC39A12 Silent p.I400I 0.25 TCGA-FS-A1ZM-06 10 25887683 25887683 C T GPR158 Missense_Mutation p.S1043F 0.13 tolerated(0.08) benign(0.021) TCGA-FS-A1ZM-06 10 37419276 37419276 C T ANKRD30A Silent p.S104S 0.23 TCGA-FS-A1ZM-06 10 6002363 6002363 C T IL15RA Missense_Mutation p.E184K 0.25 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZM-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.28 TCGA-FS-A1ZM-06 10 70958868 70958868 C T SUPV3L1 Missense_Mutation p.L405F 0.30 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZM-06 10 84118519 84118519 G A NRG3 Missense_Mutation p.R283Q 0.33 tolerated(0.16) benign(0.043) TCGA-FS-A1ZM-06 10 94267908 94267908 A T IDE Missense_Mutation p.F372Y 0.21 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZM-06 11 105880595 105880595 G A MSANTD4 Silent p.I235I 0.35 TCGA-FS-A1ZM-06 11 113650669 113650669 G T CLDN25 Missense_Mutation p.W51L 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 11 117711882 117711882 T C FXYD6 Missense_Mutation p.S64G 0.34 tolerated(0.16) benign(0.004) TCGA-FS-A1ZM-06 11 117965536 117965536 G A TMPRSS4 Silent p.Q3Q 0.28 TCGA-FS-A1ZM-06 11 124310904 124310904 G A OR8B8 Silent p.P26P 0.15 TCGA-FS-A1ZM-06 11 18738353 18738353 C T IGSF22 Missense_Mutation p.D390N 0.39 tolerated(0.35) probably_damaging(0.955) TCGA-FS-A1ZM-06 11 30255338 30255338 G A FSHB Missense_Mutation p.M127I 0.39 tolerated(0.34) benign(0) TCGA-FS-A1ZM-06 11 48511051 48511051 C A OR4A47 Nonsense_Mutation p.S236* 0.12 TCGA-FS-A1ZM-06 11 5080590 5080590 T C OR52E2 Missense_Mutation p.N90D 0.36 tolerated(0.27) benign(0.016) TCGA-FS-A1ZM-06 11 56230195 56230195 G A OR5M9 Missense_Mutation p.S228F 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 11 57947487 57947487 G A OR9Q1 Missense_Mutation p.E191K 0.40 deleterious(0.01) benign(0.297) TCGA-FS-A1ZM-06 11 59611398 59611398 C T GIF Silent p.K70K 0.37 TCGA-FS-A1ZM-06 11 61291401 61291401 C T SYT7 Missense_Mutation p.E344K 0.30 deleterious(0) possibly_damaging(0.87) TCGA-FS-A1ZM-06 11 63279257 63279257 C T LGALS12 Missense_Mutation p.L221F 0.39 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZM-06 11 65810581 65810581 C T GAL3ST3 Silent p.V231V 0.16 TCGA-FS-A1ZM-06 11 67287292 67287292 G A CABP2 Silent p.L203L 0.51 TCGA-FS-A1ZM-06 11 7960726 7960726 G A OR10A3 Silent p.L114L 0.28 TCGA-FS-A1ZM-06 11 7960727 7960727 A C OR10A3 Missense_Mutation p.L114R 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 11 8752562 8752562 C A ST5 Missense_Mutation p.C92F 0.09 tolerated_low_confidence(0.12) benign(0.11) TCGA-FS-A1ZM-06 11 89891372 89891372 C T NAALAD2 Missense_Mutation p.P286S 0.21 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZM-06 11 92531411 92531411 C T FAT3 Silent p.T1744T 0.21 TCGA-FS-A1ZM-06 11 93523911 93523911 C T MED17 Nonsense_Mutation p.R197* 0.34 TCGA-FS-A1ZM-06 12 105550525 105550525 G A KIAA1033 Missense_Mutation p.R927Q 0.14 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A1ZM-06 12 111652026 111652026 C T CUX2 Missense_Mutation p.S29F 0.08 deleterious(0) benign(0.386) TCGA-FS-A1ZM-06 12 11546316 11546316 G A PRB2 Silent p.S232S 0.16 TCGA-FS-A1ZM-06 12 124841297 124841297 C T NCOR2 Silent p.G1044G 0.45 TCGA-FS-A1ZM-06 12 25243071 25243071 C T LRMP Silent p.S182S 0.75 TCGA-FS-A1ZM-06 12 438098 438098 G A KDM5A Missense_Mutation p.P624L 0.68 deleterious(0) benign(0.231) TCGA-FS-A1ZM-06 12 43826231 43826231 G A ADAMTS20 Missense_Mutation p.S991F 0.52 deleterious(0.01) benign(0.222) TCGA-FS-A1ZM-06 12 49420526 49420526 C T KMT2D Missense_Mutation p.G5075R 0.62 unknown(0) TCGA-FS-A1ZM-06 12 52702068 52702068 C T KRT86 Intron 0.46 TCGA-FS-A1ZM-06 12 52775309 52775309 C T KRT84 Missense_Mutation p.E305K 0.41 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZM-06 12 52913579 52913579 C T KRT5 Missense_Mutation p.E168K 0.41 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZM-06 12 55421367 55421367 C T NEUROD4 3'UTR 0.29 TCGA-FS-A1ZM-06 12 62103983 62103983 G A FAM19A2 3'UTR 0.69 TCGA-FS-A1ZM-06 12 79679739 79679739 G A SYT1 Silent p.T113T 0.37 TCGA-FS-A1ZM-06 13 100204470 100204470 G C TM9SF2 Missense_Mutation p.G460R 0.27 tolerated(0.25) possibly_damaging(0.651) TCGA-FS-A1ZM-06 13 21565530 21565530 C T LATS2 Missense_Mutation p.R119Q 0.20 tolerated_low_confidence(0.17) probably_damaging(0.996) TCGA-FS-A1ZM-06 13 33333804 33333804 G C PDS5B Missense_Mutation p.M1116I 0.22 tolerated(0.15) benign(0.001) TCGA-FS-A1ZM-06 13 43843642 43843642 G A ENOX1 Silent p.S506S 0.30 TCGA-FS-A1ZM-06 13 92345598 92345598 A T GPC5 Missense_Mutation p.E161D 0.25 tolerated(0.6) possibly_damaging(0.597) TCGA-FS-A1ZM-06 14 101419690 101419690 C T SNORD114-3 RNA 0.20 TCGA-FS-A1ZM-06 14 106926190 106926190 C T IGHV3-43 Missense_Mutation p.D118N 0.14 tolerated_low_confidence(0.05) benign(0.109) TCGA-FS-A1ZM-06 14 20979015 20979015 G A RNASE10 Missense_Mutation p.E129K 0.44 tolerated(0.37) benign(0.007) TCGA-FS-A1ZM-06 14 22337313 22337313 G A TRAV13-1 Missense_Mutation p.G35E 0.31 deleterious(0.02) possibly_damaging(0.799) TCGA-FS-A1ZM-06 14 38724651 38724651 G A CLEC14A Missense_Mutation p.R193C 0.43 deleterious(0.02) possibly_damaging(0.862) TCGA-FS-A1ZM-06 14 45433494 45433494 T A FAM179B Missense_Mutation p.C624S 0.27 tolerated(1) benign(0.004) TCGA-FS-A1ZM-06 14 45513962 45513962 C T FAM179B Missense_Mutation p.A1348V 0.28 deleterious(0.03) benign(0.085) TCGA-FS-A1ZM-06 14 94545401 94545401 T C DDX24 Missense_Mutation p.K230E 0.29 deleterious(0.05) benign(0.446) TCGA-FS-A1ZM-06 15 25419962 25419962 C T SNORD115-3 5'Flank 0.22 TCGA-FS-A1ZM-06 15 34640410 34640410 G A NUTM1 Missense_Mutation p.G86D 0.27 tolerated(0.13) benign(0.403) TCGA-FS-A1ZM-06 15 42743614 42743614 A G ZNF106 Missense_Mutation p.W263R 0.25 tolerated(0.11) benign(0.023) TCGA-FS-A1ZM-06 15 43783950 43783950 G A TP53BP1 Silent p.D96D 0.41 TCGA-FS-A1ZM-06 15 50152382 50152382 C T ATP8B4 3'UTR 0.11 TCGA-FS-A1ZM-06 15 51201071 51201071 C T AP4E1 Silent p.F32F 0.14 TCGA-FS-A1ZM-06 15 53908382 53908382 C T WDR72 Nonsense_Mutation p.W674* 0.34 TCGA-FS-A1ZM-06 15 67664977 67664977 G A IQCH Missense_Mutation p.E428K 0.17 deleterious(0) possibly_damaging(0.544) TCGA-FS-A1ZM-06 15 75941869 75941869 C T SNX33 Silent p.P142P 0.34 TCGA-FS-A1ZM-06 15 86790961 86790961 C T AGBL1 Nonsense_Mutation p.Q150* 0.39 TCGA-FS-A1ZM-06 15 90999498 90999498 C T IQGAP1 Missense_Mutation p.A576V 0.09 tolerated(0.05) benign(0.299) TCGA-FS-A1ZM-06 16 1128917 1128917 C T SSTR5 Missense_Mutation p.P17S 0.44 tolerated(0.63) benign(0.007) TCGA-FS-A1ZM-06 16 14968902 14968902 C T NOMO1 Silent p.I688I 0.27 TCGA-FS-A1ZM-06 16 30783228 30783228 C T RNF40 Silent p.I887I 0.37 TCGA-FS-A1ZM-06 16 30783229 30783229 C T RNF40 Nonsense_Mutation p.Q888* 0.37 TCGA-FS-A1ZM-06 16 31471181 31471181 C T ARMC5 Silent p.S112S 0.55 TCGA-FS-A1ZM-06 17 10418201 10418201 G A MYH1 Nonsense_Mutation p.Q173* 0.24 TCGA-FS-A1ZM-06 17 10537449 10537449 C T MYH3 Silent p.E1469E 0.22 TCGA-FS-A1ZM-06 17 26938597 26938597 G A SGK494 Missense_Mutation p.L267F 0.33 tolerated(0.07) probably_damaging(0.987) TCGA-FS-A1ZM-06 17 39041305 39041305 G A KRT20 Missense_Mutation p.R45C 0.18 tolerated(0.07) benign(0.167) TCGA-FS-A1ZM-06 17 39041306 39041306 G A KRT20 Silent p.I44I 0.19 TCGA-FS-A1ZM-06 17 39507013 39507013 A C KRT33A Missense_Mutation p.Y3D 0.52 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-FS-A1ZM-06 17 39723595 39723595 C T KRT9 Missense_Mutation p.G601E 0.15 unknown(0) TCGA-FS-A1ZM-06 17 40275355 40275355 G A HSPB9 3'UTR 0.29 TCGA-FS-A1ZM-06 17 43309832 43309832 G A FMNL1 Nonsense_Mutation p.W104* 0.26 TCGA-FS-A1ZM-06 17 4356364 4356364 G A SPNS3 Missense_Mutation p.G326E 0.40 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZM-06 17 48757215 48757215 C T ABCC3 Silent p.I1254I 0.33 TCGA-FS-A1ZM-06 17 73835948 73835948 C T UNC13D Missense_Mutation p.D343N 0.12 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZM-06 17 78113496 78113496 C T EIF4A3 Missense_Mutation p.D187N 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 18 13884597 13884597 G A MC2R 3'UTR 0.31 TCGA-FS-A1ZM-06 18 14848844 14848844 A T ANKRD30B Missense_Mutation p.Q985L 0.23 deleterious(0) benign(0.107) TCGA-FS-A1ZM-06 18 2688411 2688411 C T SMCHD1 Missense_Mutation p.R220C 0.22 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZM-06 18 28576937 28576937 C T DSC3 Missense_Mutation p.M771I 0.20 tolerated(0.59) benign(0.001) TCGA-FS-A1ZM-06 18 31523129 31523129 G A NOL4 Missense_Mutation p.P481L 0.27 deleterious(0.03) possibly_damaging(0.595) TCGA-FS-A1ZM-06 18 31523130 31523130 G A NOL4 Missense_Mutation p.P481S 0.26 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZM-06 18 57103350 57103350 G A CCBE1 Silent p.F337F 0.38 TCGA-FS-A1ZM-06 18 61322970 61322970 C T SERPINB3 Missense_Mutation p.C365Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 18 61383349 61383349 G A SERPINB11 Silent p.R146R 0.36 TCGA-FS-A1ZM-06 18 61460426 61460426 T G SERPINB7 Missense_Mutation p.F84C 0.25 deleterious(0) possibly_damaging(0.643) TCGA-FS-A1ZM-06 18 77679332 77679332 T C PQLC1 Missense_Mutation p.T154A 0.10 tolerated(0.27) benign(0.005) TCGA-FS-A1ZM-06 18 8826060 8826060 T C SOGA2 Silent p.L1518L 0.25 TCGA-FS-A1ZM-06 18 9255436 9255436 C T ANKRD12 Missense_Mutation p.S724L 0.16 tolerated_low_confidence(0.11) benign(0.003) TCGA-FS-A1ZM-06 18 9886650 9886650 C T TXNDC2 Silent p.A58A 0.37 TCGA-FS-A1ZM-06 18 9888079 9888079 G A TXNDC2 Missense_Mutation p.D535N 0.57 deleterious(0.02) possibly_damaging(0.569) TCGA-FS-A1ZM-06 19 12799935 12799935 G A FBXW9 3'UTR 0.62 TCGA-FS-A1ZM-06 19 14910268 14910268 C T OR7C1 Silent p.R227R 0.45 TCGA-FS-A1ZM-06 19 1622363 1622363 G A TCF3 Missense_Mutation p.P201S 0.47 tolerated(0.15) benign(0.031) TCGA-FS-A1ZM-06 19 20215083 20215083 C T ZNF90 Silent p.F13F 0.35 TCGA-FS-A1ZM-06 19 2408579 2408579 C A TMPRSS9 Silent p.P322P 0.08 TCGA-FS-A1ZM-06 19 34263477 34263477 G A CHST8 Missense_Mutation p.E262K 0.47 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 19 35757839 35757839 A C LSR Silent p.R419R 0.12 TCGA-FS-A1ZM-06 19 41122823 41122823 C A LTBP4 Silent p.P1014P 0.09 TCGA-FS-A1ZM-06 19 44174323 44174323 C T PLAUR 5'UTR 0.33 TCGA-FS-A1ZM-06 19 46215078 46215078 C T FBXO46 Missense_Mutation p.G559E 0.54 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZM-06 19 46914505 46914505 C T CCDC8 Silent p.L521L 0.13 TCGA-FS-A1ZM-06 19 50001293 50001293 C T RPS11 Missense_Mutation p.P115S 0.23 deleterious(0.02) possibly_damaging(0.519) TCGA-FS-A1ZM-06 19 50060402 50060402 G A NOSIP Silent p.I121I 0.21 TCGA-FS-A1ZM-06 19 50060403 50060403 A C NOSIP Missense_Mutation p.I121S 0.22 tolerated(0.09) benign(0.333) TCGA-FS-A1ZM-06 19 53209661 53209661 G A ZNF611 Missense_Mutation p.S216L 0.21 tolerated(0.06) probably_damaging(0.983) TCGA-FS-A1ZM-06 19 55086450 55086450 C T LILRA2 Missense_Mutation p.S202F 0.14 tolerated(0.11) benign(0.025) TCGA-FS-A1ZM-06 19 56047472 56047472 C T SBK2 Missense_Mutation p.E64K 0.53 tolerated(0.42) benign(0.136) TCGA-FS-A1ZM-06 19 7968862 7968862 C T MAP2K7 Silent p.S11S 0.50 TCGA-FS-A1ZM-06 19 9085057 9085057 G A MUC16 Missense_Mutation p.S2253F 0.13 unknown(0) TCGA-FS-A1ZM-06 19 9085156 9085156 G T MUC16 Missense_Mutation p.P2220Q 0.15 unknown(0) TCGA-FS-A1ZM-06 1 109806907 109806907 C G CELSR2 Missense_Mutation p.L1737V 0.45 deleterious(0.04) benign(0.291) TCGA-FS-A1ZM-06 1 119427402 119427402 C T TBX15 Missense_Mutation p.G482R 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZM-06 1 12359295 12359295 C T VPS13D Silent p.L2024L 0.47 TCGA-FS-A1ZM-06 1 12835087 12835087 C A PRAMEF12 Missense_Mutation p.P26H 0.56 tolerated(0.07) benign(0.264) TCGA-FS-A1ZM-06 1 151278757 151278757 C T PI4KB Missense_Mutation p.R434Q 0.39 tolerated(0.09) benign(0.015) TCGA-FS-A1ZM-06 1 151491671 151491671 G A CGN Missense_Mutation p.E226K 0.11 tolerated(0.43) benign(0.108) TCGA-FS-A1ZM-06 1 155448249 155448249 G A ASH1L Missense_Mutation p.P1471L 0.17 deleterious_low_confidence(0) benign(0.304) TCGA-FS-A1ZM-06 1 156268786 156268786 G A VHLL Silent p.I65I 0.26 TCGA-FS-A1ZM-06 1 157803299 157803299 G A CD5L Missense_Mutation p.P241L 0.15 deleterious(0.01) benign(0.303) TCGA-FS-A1ZM-06 1 159283707 159283707 A T OR10J3 Missense_Mutation p.V248E 0.21 deleterious(0.02) possibly_damaging(0.739) TCGA-FS-A1ZM-06 1 159283708 159283708 C T OR10J3 Missense_Mutation p.V248M 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-FS-A1ZM-06 1 169347625 169347625 C T BLZF1 Missense_Mutation p.H176Y 0.44 deleterious(0) possibly_damaging(0.493) TCGA-FS-A1ZM-06 1 176853551 176853551 G A ASTN1 Silent p.I1050I 0.22 TCGA-FS-A1ZM-06 1 182898843 182898843 C T SHCBP1L Missense_Mutation p.G374E 0.39 deleterious(0) probably_damaging(0.963) TCGA-FS-A1ZM-06 1 18691797 18691797 G A IGSF21 Silent p.Q207Q 0.31 TCGA-FS-A1ZM-06 1 190195314 190195314 G A BRINP3 Missense_Mutation p.P287S 0.48 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZM-06 1 192335123 192335123 G A RGS21 Missense_Mutation p.E110K 0.58 tolerated(0.48) benign(0.311) TCGA-FS-A1ZM-06 1 222695836 222695836 C T HHIPL2 3'UTR 0.13 TCGA-FS-A1ZM-06 1 228238595 228238595 C T WNT3A Silent p.N184N 0.33 TCGA-FS-A1ZM-06 1 234565942 234565942 G A TARBP1 Missense_Mutation p.H834Y 0.37 tolerated(0.52) benign(0) TCGA-FS-A1ZM-06 1 236143949 236143949 G A NID1 Missense_Mutation p.L1078F 0.47 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZM-06 1 236143950 236143950 G A NID1 Silent p.N1077N 0.47 TCGA-FS-A1ZM-06 1 23688771 23688771 C T ZNF436 Silent p.G368G 0.42 TCGA-FS-A1ZM-06 1 247978756 247978756 G A OR14A16 Silent p.F92F 0.53 TCGA-FS-A1ZM-06 1 248039677 248039677 C T TRIM58 Silent p.F449F 0.48 TCGA-FS-A1ZM-06 1 26510755 26510755 C T CNKSR1 Missense_Mutation p.P326L 0.16 deleterious(0.01) possibly_damaging(0.548) TCGA-FS-A1ZM-06 1 27874537 27874537 G C AHDC1 Missense_Mutation p.H1364D 0.37 tolerated(0.06) benign(0.402) TCGA-FS-A1ZM-06 1 29587201 29587201 C T PTPRU Silent p.S310S 0.15 TCGA-FS-A1ZM-06 1 36367910 36367911 - A AGO1 Frame_Shift_Ins p.Q459Tfs*71 0.12 TCGA-FS-A1ZM-06 1 36384665 36384665 C T AGO1 Nonsense_Mutation p.R759* 0.50 TCGA-FS-A1ZM-06 1 36859386 36859386 C T LSM10 Nonsense_Mutation p.W115* 0.15 TCGA-FS-A1ZM-06 1 46657986 46657986 C T POMGNT1 Silent p.P469P 0.34 TCGA-FS-A1ZM-06 1 50572027 50572027 G A ELAVL4 Missense_Mutation p.E8K 0.33 deleterious_low_confidence(0) benign(0.007) TCGA-FS-A1ZM-06 1 57185941 57185941 C T C1orf168 Missense_Mutation p.G679E 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 1 57491655 57491655 G A DAB1 Missense_Mutation p.P262L 0.18 tolerated(0.13) benign(0.209) TCGA-FS-A1ZM-06 1 60505724 60505724 G A C1orf87 Silent p.I204I 0.25 TCGA-FS-A1ZM-06 20 1115875 1115875 C T PSMF1 Silent p.P159P 0.49 TCGA-FS-A1ZM-06 20 1146912 1146912 G A PSMF1 3'UTR 0.35 TCGA-FS-A1ZM-06 20 1146913 1146913 G A PSMF1 3'UTR 0.35 TCGA-FS-A1ZM-06 20 13782284 13782284 C T NDUFAF5 Silent p.D224D 0.26 TCGA-FS-A1ZM-06 20 21493043 21493043 T C NKX2-2 Missense_Mutation p.N114D 0.41 tolerated(0.53) benign(0.006) TCGA-FS-A1ZM-06 20 2644839 2644839 C T IDH3B 5'UTR 0.19 TCGA-FS-A1ZM-06 20 2777035 2777035 C T CPXM1 Missense_Mutation p.R367Q 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 20 29977001 29977001 A G DEFB119 Silent p.L32L 0.27 TCGA-FS-A1ZM-06 20 31024546 31024546 C T ASXL1 Missense_Mutation p.S1344F 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-FS-A1ZM-06 20 39978454 39978454 G T LPIN3 Nonsense_Mutation p.E227* 0.28 TCGA-FS-A1ZM-06 20 44506018 44506018 C T ZSWIM3 Missense_Mutation p.S274F 0.44 deleterious(0) possibly_damaging(0.835) TCGA-FS-A1ZM-06 20 49509856 49509856 G A ADNP Silent p.F465F 0.28 TCGA-FS-A1ZM-06 20 54824661 54824661 C T MC3R Silent p.C254C 0.43 TCGA-FS-A1ZM-06 21 15599221 15599221 A T RBM11 Silent p.P151P 0.27 TCGA-FS-A1ZM-06 21 15599222 15599222 G A RBM11 Missense_Mutation p.V152M 0.27 tolerated(0.98) benign(0.012) TCGA-FS-A1ZM-06 21 39087253 39087253 G A KCNJ6 Silent p.N69N 0.32 TCGA-FS-A1ZM-06 21 39774506 39774506 G T ERG Missense_Mutation p.P223T 0.26 deleterious(0.01) possibly_damaging(0.587) TCGA-FS-A1ZM-06 21 40834351 40834351 C T SH3BGR Silent p.I95I 0.21 TCGA-FS-A1ZM-06 21 41465790 41465790 C T DSCAM Silent p.E1236E 0.27 TCGA-FS-A1ZM-06 21 47971610 47971610 C G DIP2A Missense_Mutation p.S968C 0.24 tolerated(0.1) possibly_damaging(0.839) TCGA-FS-A1ZM-06 22 21800594 21800594 C T HIC2 Silent p.F470F 0.25 TCGA-FS-A1ZM-06 22 36003387 36003387 T G MB Missense_Mutation p.K141T 0.29 tolerated(0.21) benign(0.067) TCGA-FS-A1ZM-06 22 38323801 38323801 C T MICALL1 Missense_Mutation p.P617S 0.46 tolerated(0.13) benign(0.015) TCGA-FS-A1ZM-06 22 50693885 50693885 G C MAPK12 Missense_Mutation p.L283V 0.44 tolerated(0.36) benign(0.038) TCGA-FS-A1ZM-06 22 51123067 51123067 G A SHANK3 Missense_Mutation p.D340N 0.36 benign(0.229) TCGA-FS-A1ZM-06 2 102781300 102781300 C T IL1R1 Missense_Mutation p.P43L 0.26 tolerated(0.37) benign(0) TCGA-FS-A1ZM-06 2 113875485 113875485 G A IL1RN 5'UTR 0.27 TCGA-FS-A1ZM-06 2 143713800 143713800 G A KYNU Missense_Mutation p.R155Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZM-06 2 14774073 14774073 C A FAM84A 5'UTR 0.15 TCGA-FS-A1ZM-06 2 152490354 152490354 T C NEB Silent p.K3076K 0.29 TCGA-FS-A1ZM-06 2 160007007 160007007 C T TANC1 Missense_Mutation p.P208S 0.39 tolerated(0.08) probably_damaging(0.926) TCGA-FS-A1ZM-06 2 179495667 179495667 C A TTN Missense_Mutation p.R14673L 0.23 TCGA-FS-A1ZM-06 2 179605631 179605631 C T TTN Missense_Mutation p.G4110E 0.41 TCGA-FS-A1ZM-06 2 179702368 179702368 T C CCDC141 Missense_Mutation p.D1193G 0.35 tolerated(1) benign(0) TCGA-FS-A1ZM-06 2 1906872 1906872 G A MYT1L Missense_Mutation p.S669F 0.32 deleterious(0) possibly_damaging(0.894) TCGA-FS-A1ZM-06 2 219000495 219000495 G A CXCR2 Missense_Mutation p.G324E 0.31 tolerated(0.24) possibly_damaging(0.476) TCGA-FS-A1ZM-06 2 219507131 219507131 C T ZNF142 Missense_Mutation p.D1370N 0.37 deleterious(0.01) possibly_damaging(0.539) TCGA-FS-A1ZM-06 2 230377642 230377642 G A DNER Missense_Mutation p.S335F 0.32 tolerated(1) benign(0.003) TCGA-FS-A1ZM-06 2 230910937 230910937 G A SLC16A14 Missense_Mutation p.S302L 0.30 tolerated(0.16) benign(0.026) TCGA-FS-A1ZM-06 2 235943748 235943748 C T SH3BP4 Silent p.S34S 0.31 TCGA-FS-A1ZM-06 2 242814328 242814328 C T CXXC11 Silent p.S207S 0.23 TCGA-FS-A1ZM-06 2 26501519 26501519 C T HADHB Silent p.I160I 0.26 TCGA-FS-A1ZM-06 2 37458795 37458795 G A CEBPZ 5'UTR 0.24 TCGA-FS-A1ZM-06 2 50170887 50170887 C T NRXN1 Missense_Mutation p.D1431N 0.39 deleterious(0) possibly_damaging(0.771) TCGA-FS-A1ZM-06 2 71816787 71816787 A G DYSF Missense_Mutation p.N1156S 0.07 deleterious(0.03) benign(0.444) TCGA-FS-A1ZM-06 2 90121708 90121708 C T IGKV1D-17 Silent p.F17F 0.30 TCGA-FS-A1ZM-06 2 90153774 90153774 C T IGKV3D-15 Silent p.L10L 0.16 TCGA-FS-A1ZM-06 3 10140621 10140621 C T FANCD2 Missense_Mutation p.P1468L 0.26 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZM-06 3 113955133 113955133 C T ZNF80 Silent p.Q263Q 0.28 TCGA-FS-A1ZM-06 3 122269585 122269585 G A PARP9 Missense_Mutation p.S426F 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-FS-A1ZM-06 3 122634311 122634311 G A SEMA5B Missense_Mutation p.A709V 0.35 tolerated(0.09) benign(0.209) TCGA-FS-A1ZM-06 3 1424655 1424655 G A CNTN6 Silent p.E732E 0.13 TCGA-FS-A1ZM-06 3 150877703 150877703 G A MED12L Missense_Mutation p.D308N 0.26 tolerated(0.32) probably_damaging(0.91) TCGA-FS-A1ZM-06 3 155200266 155200266 C T PLCH1 Silent p.E1191E 0.30 TCGA-FS-A1ZM-06 3 196288262 196288262 C T WDR53 Missense_Mutation p.E29K 0.53 deleterious(0) possibly_damaging(0.899) TCGA-FS-A1ZM-06 3 196288357 196288357 G A WDR53 5'UTR 0.34 TCGA-FS-A1ZM-06 3 4403791 4403791 G A SUMF1 3'UTR 0.29 TCGA-FS-A1ZM-06 3 45814059 45814059 G A SLC6A20 Missense_Mutation p.L211F 0.24 tolerated(0.25) probably_damaging(1) TCGA-FS-A1ZM-06 3 49114419 49114426 AAGGAGAT - QRICH1 Frame_Shift_Del p.I9* 0.15 TCGA-FS-A1ZM-06 3 9055492 9055492 G A SRGAP3 Silent p.I616I 0.37 TCGA-FS-A1ZM-06 3 98072744 98072744 G A OR5K4 Missense_Mutation p.G16E 0.24 deleterious(0.01) possibly_damaging(0.707) TCGA-FS-A1ZM-06 3 98487368 98487368 C T ST3GAL6 Silent p.V28V 0.24 TCGA-FS-A1ZM-06 4 107157662 107157662 G A TBCK Missense_Mutation p.P412L 0.47 deleterious(0.02) benign(0.067) TCGA-FS-A1ZM-06 4 113356441 113356441 G A ALPK1 Missense_Mutation p.E1058K 0.34 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZM-06 4 119256736 119256736 G A PRSS12 Missense_Mutation p.R238C 0.30 tolerated(0.17) benign(0.009) TCGA-FS-A1ZM-06 4 141598154 141598154 G A TBC1D9 Missense_Mutation p.P318L 0.42 deleterious(0) possibly_damaging(0.866) TCGA-FS-A1ZM-06 4 15627133 15627133 C A FBXL5 Missense_Mutation p.S531I 0.40 deleterious(0.03) possibly_damaging(0.62) TCGA-FS-A1ZM-06 4 40123006 40123006 T C N4BP2 Missense_Mutation p.L1092P 0.61 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 4 44177176 44177176 G A KCTD8 Silent p.S351S 0.19 TCGA-FS-A1ZM-06 4 619541 619541 G A PDE6B Silent p.P42P 0.41 TCGA-FS-A1ZM-06 4 69681886 69681886 A C UGT2B10 Missense_Mutation p.H50P 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 4 75938300 75938300 G A PARM1 Missense_Mutation p.E237K 0.26 deleterious(0.04) benign(0.018) TCGA-FS-A1ZM-06 4 7719824 7719824 C T SORCS2 Missense_Mutation p.P780S 0.26 deleterious(0) possibly_damaging(0.664) TCGA-FS-A1ZM-06 4 77300459 77300459 C T CCDC158 Missense_Mutation p.R338K 0.44 tolerated(0.11) probably_damaging(0.954) TCGA-FS-A1ZM-06 4 8221096 8221096 G T SH3TC1 Missense_Mutation p.Q317H 0.09 deleterious(0.01) possibly_damaging(0.896) TCGA-FS-A1ZM-06 5 125891679 125891679 A G ALDH7A1 Missense_Mutation p.V346A 0.11 deleterious(0) possibly_damaging(0.72) TCGA-FS-A1ZM-06 5 127728930 127728930 C A FBN2 Missense_Mutation p.G455W 0.08 tolerated(0.07) possibly_damaging(0.892) TCGA-FS-A1ZM-06 5 128302185 128302185 G A SLC27A6 Missense_Mutation p.V119I 0.52 tolerated(0.69) benign(0.007) TCGA-FS-A1ZM-06 5 131931281 131931281 C T RAD50 Silent p.A662A 0.42 TCGA-FS-A1ZM-06 5 137228269 137228269 T C PKD2L2 Silent p.F78F 0.37 TCGA-FS-A1ZM-06 5 140502118 140502118 C T PCDHB4 Missense_Mutation p.L180F 0.37 tolerated_low_confidence(0.22) benign(0.135) TCGA-FS-A1ZM-06 5 155062 155062 G C PLEKHG4B Missense_Mutation p.G333R 0.54 deleterious(0.02) possibly_damaging(0.52) TCGA-FS-A1ZM-06 5 180374511 180374511 G A BTNL8 Splice_Site p.X225_splice 0.13 TCGA-FS-A1ZM-06 5 180424410 180424410 G A BTNL3 Missense_Mutation p.E199K 0.42 tolerated(0.35) possibly_damaging(0.905) TCGA-FS-A1ZM-06 5 180475229 180475229 G A BTNL9 Missense_Mutation p.D138N 0.10 tolerated(0.42) benign(0.01) TCGA-FS-A1ZM-06 5 180666103 180666103 G A GNB2L1 Silent p.V200V 0.36 TCGA-FS-A1ZM-06 5 35876102 35876102 C T IL7R Silent p.F298F 0.50 TCGA-FS-A1ZM-06 5 38493861 38493861 C A LIFR Missense_Mutation p.G638W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 5 40937743 40937743 G A C7 Missense_Mutation p.G173E 0.24 tolerated(0.84) benign(0.003) TCGA-FS-A1ZM-06 5 53751781 53751781 T A HSPB3 Silent p.P54P 0.76 TCGA-FS-A1ZM-06 5 56219660 56219660 C T MIER3 Silent p.T350T 0.09 TCGA-FS-A1ZM-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.35 TCGA-FS-A1ZM-06 5 71622533 71622533 G A PTCD2 Silent p.R105R 0.43 TCGA-FS-A1ZM-06 5 79616163 79616163 C T SPZ1 Silent p.S43S 0.14 TCGA-FS-A1ZM-06 5 98115338 98115338 T A RGMB Missense_Mutation p.V105E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 5 98230354 98230354 G A CHD1 Missense_Mutation p.R583W 0.38 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZM-06 5 98230355 98230355 T A CHD1 Missense_Mutation p.K582N 0.38 deleterious(0.01) possibly_damaging(0.776) TCGA-FS-A1ZM-06 6 110777985 110777985 C T SLC22A16 Missense_Mutation p.E97K 0.13 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZM-06 6 117113438 117113438 G T GPRC6A Missense_Mutation p.P883H 0.16 tolerated(0.14) benign(0.006) TCGA-FS-A1ZM-06 6 117639394 117639394 C T ROS1 Missense_Mutation p.D1988N 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZM-06 6 12122047 12122047 T G HIVEP1 Silent p.S673S 0.35 TCGA-FS-A1ZM-06 6 131904954 131904954 C T ARG1 Missense_Mutation p.T300I 0.23 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZM-06 6 133836476 133836476 A G EYA4 Missense_Mutation p.K507E 0.28 tolerated(0.06) probably_damaging(0.943) TCGA-FS-A1ZM-06 6 136667047 136667047 C T MAP7 Missense_Mutation p.G751E 0.42 tolerated(0.12) unknown(0) TCGA-FS-A1ZM-06 6 142721714 142721714 T C GPR126 Missense_Mutation p.F554L 0.21 tolerated(0.64) benign(0.059) TCGA-FS-A1ZM-06 6 27834783 27834783 C T HIST1H1B Silent p.K175K 0.48 TCGA-FS-A1ZM-06 6 30128351 30128351 C T TRIM10 Silent p.E95E 0.12 TCGA-FS-A1ZM-06 6 30572382 30572382 G A PPP1R10 Missense_Mutation p.P362L 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-FS-A1ZM-06 6 32096980 32096980 G C FKBPL Missense_Mutation p.T193S 0.14 tolerated(0.14) benign(0.42) TCGA-FS-A1ZM-06 6 37411865 37411865 C T CMTR1 Missense_Mutation p.S75F 0.81 tolerated(0.08) benign(0.226) TCGA-FS-A1ZM-06 6 55223697 55223697 G T GFRAL Missense_Mutation p.R238I 0.10 deleterious(0.05) possibly_damaging(0.694) TCGA-FS-A1ZM-06 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.26 deleterious(0) probably_damaging(0.937) TCGA-FS-A1ZM-06 6 86180955 86180955 G A NT5E Missense_Mutation p.G188E 0.29 deleterious(0.01) possibly_damaging(0.802) TCGA-FS-A1ZM-06 7 100675855 100675855 A C MUC17 Silent p.S386S 0.05 TCGA-FS-A1ZM-06 7 104715133 104715133 G - KMT2E Frame_Shift_Del p.E201Nfs*15 0.17 TCGA-FS-A1ZM-06 7 111846826 111846826 G A ZNF277 Missense_Mutation p.G19R 0.20 tolerated_low_confidence(0.19) benign(0.001) TCGA-FS-A1ZM-06 7 117232675 117232675 G A CFTR Silent p.L818L 0.48 TCGA-FS-A1ZM-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZM-06 7 141803141 141803141 G A MGAM Missense_Mutation p.E1800K 0.11 tolerated(1) benign(0.015) TCGA-FS-A1ZM-06 7 148895701 148895701 G A ZNF282 Missense_Mutation p.E148K 0.53 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZM-06 7 150873287 150873287 C T ASB10 Missense_Mutation p.G439D 0.61 tolerated(0.13) benign(0.169) TCGA-FS-A1ZM-06 7 1595015 1595015 C T TMEM184A Missense_Mutation p.D36N 0.55 tolerated(0.13) benign(0.086) TCGA-FS-A1ZM-06 7 17373557 17373557 T C AHR Silent p.L243L 0.53 TCGA-FS-A1ZM-06 7 20725337 20725337 G A ABCB5 Missense_Mutation p.E630K 0.41 tolerated(0.19) benign(0.004) TCGA-FS-A1ZM-06 7 21781669 21781669 C T DNAH11 Missense_Mutation p.P2687L 0.09 benign(0.014) TCGA-FS-A1ZM-06 7 21934243 21934243 T A DNAH11 Silent p.V4258V 0.18 TCGA-FS-A1ZM-06 7 43477638 43477638 G A HECW1 Missense_Mutation p.E280K 0.46 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 7 47968864 47968864 C T PKD1L1 Missense_Mutation p.E333K 0.46 deleterious(0.03) possibly_damaging(0.49) TCGA-FS-A1ZM-06 7 49842381 49842381 G A VWC2 Silent p.T257T 0.10 TCGA-FS-A1ZM-06 7 49842382 49842382 G A VWC2 Missense_Mutation p.E258K 0.09 deleterious(0.02) possibly_damaging(0.766) TCGA-FS-A1ZM-06 7 53103782 53103782 G A POM121L12 Missense_Mutation p.G140R 0.16 tolerated(0.25) benign(0.001) TCGA-FS-A1ZM-06 7 5348975 5348975 G A TNRC18 Missense_Mutation p.R2805C 0.29 unknown(0) TCGA-FS-A1ZM-06 7 5348976 5348976 G A TNRC18 Silent p.A2804A 0.28 TCGA-FS-A1ZM-06 7 57200000 57200000 C T ZNF479 Missense_Mutation p.R11Q 0.50 tolerated_low_confidence(0.5) benign(0.273) TCGA-FS-A1ZM-06 7 6639599 6639599 C T C7orf26 Silent p.L240L 0.10 TCGA-FS-A1ZM-06 7 75686799 75686799 C T MDH2 Missense_Mutation p.P103S 0.46 deleterious(0) probably_damaging(0.917) TCGA-FS-A1ZM-06 7 99769797 99769797 G A GPC2 Silent p.S312S 0.12 TCGA-FS-A1ZM-06 8 101620768 101620768 G A SNX31 Missense_Mutation p.S212F 0.47 deleterious(0.03) possibly_damaging(0.62) TCGA-FS-A1ZM-06 8 10469228 10469228 C T RP1L1 Missense_Mutation p.E794K 0.32 benign(0.042) TCGA-FS-A1ZM-06 8 113504731 113504731 C T CSMD3 Silent p.L1755L 0.16 TCGA-FS-A1ZM-06 8 133152391 133152391 C T KCNQ3 Silent p.R500R 0.33 TCGA-FS-A1ZM-06 8 143959214 143959214 G A CYP11B1 Intron 0.19 TCGA-FS-A1ZM-06 8 23225594 23225594 G A LOXL2 Missense_Mutation p.H91Y 0.23 tolerated(0.16) benign(0.02) TCGA-FS-A1ZM-06 8 27779736 27779736 C T SCARA5 Missense_Mutation p.D90N 0.14 deleterious(0.02) probably_damaging(0.919) TCGA-FS-A1ZM-06 8 55533756 55533756 C T RP1 Missense_Mutation p.P77L 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZM-06 8 55540336 55540336 C T RP1 Silent p.F1298F 0.41 TCGA-FS-A1ZM-06 8 6682798 6682798 C T XKR5 RNA 0.29 TCGA-FS-A1ZM-06 8 72184075 72184075 A C EYA1 Missense_Mutation p.L295W 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-FS-A1ZM-06 8 77619807 77619807 C T ZFHX4 Missense_Mutation p.R873W 0.16 possibly_damaging(0.835) TCGA-FS-A1ZM-06 8 7806707 7806707 G A ZNF705B Missense_Mutation p.M23I 0.25 deleterious(0) benign(0.048) TCGA-FS-A1ZM-06 8 80553695 80553695 A T STMN2 Missense_Mutation p.E66D 0.29 tolerated(0.43) benign(0.004) TCGA-FS-A1ZM-06 8 80553696 80553696 G A STMN2 Missense_Mutation p.A67T 0.32 tolerated(0.33) benign(0.173) TCGA-FS-A1ZM-06 8 87076413 87076413 C T PSKH2 Silent p.G211G 0.09 TCGA-FS-A1ZM-06 8 95183181 95183181 G A CDH17 Silent p.S272S 0.40 TCGA-FS-A1ZM-06 8 95183182 95183182 G A CDH17 Missense_Mutation p.S272F 0.41 tolerated(0.09) benign(0.033) TCGA-FS-A1ZM-06 9 104432571 104432571 C T GRIN3A Missense_Mutation p.R708Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZM-06 9 111641823 111641823 G A IKBKAP Missense_Mutation p.H1159Y 0.23 tolerated(0.66) benign(0.001) TCGA-FS-A1ZM-06 9 113221255 113221255 G A SVEP1 Missense_Mutation p.S1154F 0.20 benign(0.195) TCGA-FS-A1ZM-06 9 115013260 115013260 G A PTBP3 Missense_Mutation p.P285S 0.08 deleterious(0.04) possibly_damaging(0.456) TCGA-FS-A1ZM-06 9 122075564 122075564 G T BRINP1 Missense_Mutation p.H24N 0.36 tolerated_low_confidence(0.31) benign(0.006) TCGA-FS-A1ZM-06 9 139757824 139757824 G A EDF1 Silent p.H69H 0.17 TCGA-FS-A1ZM-06 9 32407274 32407274 C T ACO1 Missense_Mutation p.S38L 0.18 deleterious(0) possibly_damaging(0.755) TCGA-FS-A1ZM-06 9 36357773 36357773 G A RNF38 Missense_Mutation p.P246L 0.21 deleterious(0) possibly_damaging(0.901) TCGA-FS-A1ZM-06 9 82267551 82267551 C T TLE4 Missense_Mutation p.P145L 0.30 deleterious(0.02) possibly_damaging(0.484) TCGA-FS-A1ZM-06 9 82267552 82267552 C T TLE4 Silent p.P145P 0.31 TCGA-FS-A1ZM-06 X 114863527 114863527 A C PLS3 Missense_Mutation p.K85N 0.50 deleterious(0.01) benign(0.394) TCGA-FS-A1ZM-06 X 123514375 123514375 A G TENM1 3'UTR 0.62 TCGA-FS-A1ZM-06 X 12905795 12905795 G A TLR7 Missense_Mutation p.R723K 0.71 tolerated(1) benign(0.001) TCGA-FS-A1ZM-06 X 149767074 149767074 T C MTM1 Missense_Mutation p.I52T 0.64 deleterious(0.03) benign(0.315) TCGA-FS-A1ZM-06 X 23018475 23018475 A T DDX53 Missense_Mutation p.M101L 0.58 tolerated(0.12) benign(0.058) TCGA-FS-A1ZM-06 X 47273022 47273022 C T ZNF157 3'UTR 0.32 TCGA-FS-A1ZM-06 X 63411447 63411447 G A AMER1 Missense_Mutation p.R574W 0.52 deleterious(0) possibly_damaging(0.847) TCGA-FS-A1ZM-06 X 70281772 70281772 G A SNX12 Missense_Mutation p.P103S 0.61 tolerated(0.08) probably_damaging(0.998) TCGA-FS-A1ZM-06 X 71359490 71359490 G A NHSL2 Missense_Mutation p.E698K 0.73 tolerated_low_confidence(0.08) probably_damaging(0.997) TCGA-FS-A1ZN-01 10 50724287 50724287 G A ERCC6-PGBD3 Missense_Mutation p.R760W 0.88 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A1ZN-01 10 76468269 76468269 A G ADK 3'Flank 1.00 TCGA-FS-A1ZN-01 10 96073071 96073071 C T PLCE1 Missense_Mutation p.P2022S 0.88 tolerated(0.17) probably_damaging(0.999) TCGA-FS-A1ZN-01 10 97775979 97775979 G A CC2D2B Missense_Mutation p.G144R 0.86 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZN-01 11 1774847 1774847 G A CTSD Silent p.I375I 0.55 TCGA-FS-A1ZN-01 11 2869161 2869161 C T KCNQ1 Silent p.F653F 0.44 TCGA-FS-A1ZN-01 11 4976682 4976682 G A OR51A2 Silent p.L88L 0.91 TCGA-FS-A1ZN-01 11 55860936 55860936 G A OR8I2 Missense_Mutation p.M51I 0.42 tolerated(0.51) benign(0) TCGA-FS-A1ZN-01 11 62744273 62744273 C T SLC22A6 Missense_Mutation p.G562E 0.46 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-FS-A1ZN-01 11 64594849 64594849 G A CDC42BPG Missense_Mutation p.P1391L 0.45 tolerated(0.08) probably_damaging(0.999) TCGA-FS-A1ZN-01 11 64594850 64594850 G A CDC42BPG Missense_Mutation p.P1391S 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZN-01 11 67410356 67410356 C A ACY3 Missense_Mutation p.G267W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZN-01 12 121442834 121442834 G A C12orf43 Missense_Mutation p.R142C 0.44 tolerated(0.27) benign(0.003) TCGA-FS-A1ZN-01 12 124911200 124911200 C A NCOR2 Missense_Mutation p.W432C 0.51 unknown(0) TCGA-FS-A1ZN-01 12 18800840 18800840 G A PIK3C2G Missense_Mutation p.G1406R 0.52 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A1ZN-01 12 1989001 1989001 G A CACNA2D4 Missense_Mutation p.A511V 0.64 deleterious(0) probably_damaging(0.966) TCGA-FS-A1ZN-01 12 39760883 39760883 G A KIF21A Silent p.A228A 0.42 TCGA-FS-A1ZN-01 12 55715321 55715321 G A OR6C1 Silent p.%3D 0.44 TCGA-FS-A1ZN-01 12 56994245 56994245 G A BAZ2A Silent p.T1546T 0.40 TCGA-FS-A1ZN-01 12 60098690 60098690 C T SLC16A7 Silent p.F36F 0.49 TCGA-FS-A1ZN-01 12 7882210 7882210 C T CLEC4C Missense_Mutation p.M208I 0.40 deleterious(0.04) probably_damaging(0.98) TCGA-FS-A1ZN-01 12 89745946 89745946 C T DUSP6 5'UTR 0.58 TCGA-FS-A1ZN-01 12 9322148 9322148 G A PZP Missense_Mutation p.P627S 0.37 tolerated(0.44) probably_damaging(0.994) TCGA-FS-A1ZN-01 13 29278231 29278231 G A SLC46A3 Silent p.L384L 0.46 TCGA-FS-A1ZN-01 13 52678636 52678636 G A NEK5 Missense_Mutation p.P203S 0.45 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZN-01 13 61985483 61985483 C T PCDH20 Missense_Mutation p.E917K 0.47 tolerated(1) benign(0) TCGA-FS-A1ZN-01 14 21215867 21215867 G A EDDM3A Missense_Mutation p.R43Q 0.91 tolerated(0.35) benign(0.008) TCGA-FS-A1ZN-01 15 20488878 20488878 G C CHEK2P2 RNA 0.09 TCGA-FS-A1ZN-01 15 48780580 48780580 C T FBN1 Missense_Mutation p.E1065K 0.45 probably_damaging(0.964) TCGA-FS-A1ZN-01 15 65490487 65490487 C T CILP Missense_Mutation p.D713N 0.52 tolerated(0.33) benign(0.011) TCGA-FS-A1ZN-01 15 75111605 75111605 C T LMAN1L Missense_Mutation p.T237I 0.46 tolerated(0.08) benign(0.059) TCGA-FS-A1ZN-01 15 78393308 78393308 C A SH2D7 Missense_Mutation p.P238H 0.13 deleterious(0.02) probably_damaging(0.915) TCGA-FS-A1ZN-01 15 78885454 78885454 C T CHRNA5 Silent p.F422F 0.44 TCGA-FS-A1ZN-01 16 20681305 20681305 C T ACSM1 Silent p.R252R 0.41 TCGA-FS-A1ZN-01 16 24268071 24268071 G A CACNG3 5'UTR 0.41 TCGA-FS-A1ZN-01 16 3254585 3254585 C T OR1F1 Silent p.F113F 0.45 TCGA-FS-A1ZN-01 16 32891002 32891002 C T SLC6A10P RNA 0.48 TCGA-FS-A1ZN-01 16 4412724 4412724 G A CORO7 Missense_Mutation p.P431S 0.45 tolerated(0.37) benign(0.015) TCGA-FS-A1ZN-01 16 66974501 66974501 C T CES2 Missense_Mutation p.S304F 0.51 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZN-01 16 70926303 70926303 C T HYDIN Silent p.K3126K 0.24 TCGA-FS-A1ZN-01 16 76501305 76501305 G A CNTNAP4 Missense_Mutation p.G441R 0.41 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZN-01 17 10411975 10411975 G A MYH1 Silent p.F534F 0.47 TCGA-FS-A1ZN-01 17 11511573 11511573 G A DNAH9 Missense_Mutation p.G182E 0.43 probably_damaging(0.993) TCGA-FS-A1ZN-01 17 18565640 18565640 G A ZNF286B Silent p.S393S 0.39 TCGA-FS-A1ZN-01 17 33269603 33269603 G A CCT6B Missense_Mutation p.A262V 0.54 deleterious(0.02) benign(0.092) TCGA-FS-A1ZN-01 17 55752363 55752363 C T MSI2 Missense_Mutation p.P274L 0.53 tolerated(0.31) benign(0.006) TCGA-FS-A1ZN-01 17 74004305 74004305 C T EVPL Missense_Mutation p.D1661N 0.43 deleterious(0.01) possibly_damaging(0.632) TCGA-FS-A1ZN-01 17 74004306 74004306 C T EVPL Silent p.R1660R 0.42 TCGA-FS-A1ZN-01 17 79412403 79412403 G A RP11-1055B8.7 Silent p.L953L 0.64 TCGA-FS-A1ZN-01 18 72914190 72914190 C T ZADH2 Silent p.V105V 0.46 TCGA-FS-A1ZN-01 18 77679243 77679243 G A PQLC1 Silent p.A183A 0.54 TCGA-FS-A1ZN-01 19 17122526 17122526 C T CPAMD8 Nonsense_Mutation p.W150* 0.49 TCGA-FS-A1ZN-01 19 22939345 22939345 T C ZNF99 3'Flank 0.47 TCGA-FS-A1ZN-01 19 4511544 4511544 C T PLIN4 Missense_Mutation p.A796T 0.26 deleterious(0.03) benign(0.065) TCGA-FS-A1ZN-01 19 4511545 4511545 C T PLIN4 Silent p.V795V 0.28 TCGA-FS-A1ZN-01 19 53344878 53344878 G A ZNF468 Silent p.S223S 0.49 TCGA-FS-A1ZN-01 19 53761927 53761927 G A VN1R2 Missense_Mutation p.G100E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZN-01 19 9065721 9065721 G A MUC16 Missense_Mutation p.S7242F 0.41 unknown(0) TCGA-FS-A1ZN-01 1 111441915 111441915 C T CD53 3'UTR 0.56 TCGA-FS-A1ZN-01 1 152487927 152487927 C T CRCT1 Missense_Mutation p.P23L 0.63 unknown(0) TCGA-FS-A1ZN-01 1 155255641 155255641 G C HCN3 Missense_Mutation p.V455L 0.60 deleterious(0.03) benign(0.09) TCGA-FS-A1ZN-01 1 158325920 158325920 G A CD1E Intron 0.65 TCGA-FS-A1ZN-01 1 233802615 233802615 G A KCNK1 Nonsense_Mutation p.W210* 0.59 TCGA-FS-A1ZN-01 1 237947253 237947253 G A RYR2 Missense_Mutation p.E4081K 0.22 benign(0.079) TCGA-FS-A1ZN-01 1 247654438 247654438 G A OR2W5 RNA 0.56 TCGA-FS-A1ZN-01 1 34330054 34330054 C G HMGB4 Missense_Mutation p.R88G 0.27 deleterious(0.02) possibly_damaging(0.478) TCGA-FS-A1ZN-01 1 36550643 36550643 G A TEKT2 Missense_Mutation p.E41K 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1ZN-01 1 89523792 89523792 G A GBP1 Silent p.L253L 0.44 TCGA-FS-A1ZN-01 1 94964564 94964564 C T ABCD3 Nonsense_Mutation p.Q532* 0.46 TCGA-FS-A1ZN-01 20 33706361 33706361 G A EDEM2 Intron 0.45 TCGA-FS-A1ZN-01 20 6759423 6759423 A C BMP2 Missense_Mutation p.K293T 0.30 deleterious(0.04) probably_damaging(0.963) TCGA-FS-A1ZN-01 21 10996106 10996106 C T TPTE RNA 0.22 TCGA-FS-A1ZN-01 21 35895913 35895913 G A RCAN1 Silent p.P116P 0.88 TCGA-FS-A1ZN-01 22 22890563 22890563 G A PRAME Missense_Mutation p.P486S 0.46 tolerated(0.16) benign(0.276) TCGA-FS-A1ZN-01 22 46657755 46657755 C T PKDREJ Missense_Mutation p.D489N 0.45 tolerated(0.28) possibly_damaging(0.88) TCGA-FS-A1ZN-01 2 101609880 101609880 C T NPAS2 Missense_Mutation p.P728L 0.26 deleterious(0) possibly_damaging(0.851) TCGA-FS-A1ZN-01 2 116510813 116510813 C T DPP10 Silent p.N342N 0.44 TCGA-FS-A1ZN-01 2 144710388 144710388 A G GTDC1 Missense_Mutation p.C385R 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1ZN-01 2 149806433 149806433 G A KIF5C Silent p.V265V 0.44 TCGA-FS-A1ZN-01 2 159035397 159035397 C T CCDC148 Silent p.R494R 0.37 TCGA-FS-A1ZN-01 2 163302839 163302839 G A KCNH7 Silent p.L415L 0.33 TCGA-FS-A1ZN-01 2 170002377 170002377 C T LRP2 Missense_Mutation p.E4290K 0.41 possibly_damaging(0.493) TCGA-FS-A1ZN-01 2 179644801 179644801 C T TTN Missense_Mutation p.E1219K 0.43 TCGA-FS-A1ZN-01 2 192701377 192701377 C T SDPR Missense_Mutation p.E184K 0.42 tolerated(0.06) benign(0.353) TCGA-FS-A1ZN-01 2 219266858 219266858 C T CTDSP1 Missense_Mutation p.P81S 0.46 deleterious(0.03) benign(0.045) TCGA-FS-A1ZN-01 2 219538675 219538675 A G STK36 Missense_Mutation p.D100G 0.46 deleterious(0) benign(0.155) TCGA-FS-A1ZN-01 2 242814522 242814522 G A CXXC11 Missense_Mutation p.G272D 0.27 deleterious(0.01) possibly_damaging(0.879) TCGA-FS-A1ZN-01 2 33745056 33745056 C T RASGRP3 Nonsense_Mutation p.R71* 0.58 TCGA-FS-A1ZN-01 3 108813812 108813812 G A MORC1 Missense_Mutation p.P176L 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZN-01 3 112280339 112280340 - TTCCAGTGCCT ATG3 Frame_Shift_Ins p.L13Rfs*11 0.11 TCGA-FS-A1ZN-01 3 161214696 161214696 A C OTOL1 Missense_Mutation p.K34T 0.32 deleterious(0.05) unknown(0) TCGA-FS-A1ZN-01 3 21467028 21467028 C T ZNF385D Missense_Mutation p.E270K 0.51 deleterious(0.01) probably_damaging(0.973) TCGA-FS-A1ZN-01 3 32995259 32995259 G A CCR4 Nonsense_Mutation p.W115* 0.49 TCGA-FS-A1ZN-01 3 42917159 42917159 C T CYP8B1 Silent p.R50R 0.26 TCGA-FS-A1ZN-01 3 58395340 58395340 C T PXK Nonsense_Mutation p.R464* 0.64 TCGA-FS-A1ZN-01 3 95374381 95374381 C T MTHFD2P1 RNA 0.57 TCGA-FS-A1ZN-01 4 138451637 138451637 C T PCDH18 Missense_Mutation p.E536K 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZN-01 4 155507077 155507077 C T FGA Missense_Mutation p.G502S 0.41 tolerated(0.22) benign(0.145) TCGA-FS-A1ZN-01 4 44638040 44638040 G A YIPF7 Missense_Mutation p.S84L 0.46 tolerated(0.06) benign(0.003) TCGA-FS-A1ZN-01 4 647869 647869 G A PDE6B Missense_Mutation p.E285K 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-FS-A1ZN-01 5 101709073 101709073 C T SLCO6A1 Missense_Mutation p.E715K 0.37 tolerated(0.12) benign(0.005) TCGA-FS-A1ZN-01 5 122361653 122361653 G A PPIC Silent p.I112I 0.38 TCGA-FS-A1ZN-01 5 13820543 13820543 C T DNAH5 Silent p.T2251T 0.40 TCGA-FS-A1ZN-01 5 140754153 140754153 A T PCDHGA6 Missense_Mutation p.Q168L 0.50 deleterious_low_confidence(0.01) benign(0.443) TCGA-FS-A1ZN-01 5 176016402 176016402 C T CDHR2 Missense_Mutation p.S1027F 0.38 deleterious(0.01) benign(0.309) TCGA-FS-A1ZN-01 5 177649539 177649539 G A PHYKPL Silent p.I248I 0.39 TCGA-FS-A1ZN-01 5 21842363 21842363 C T CDH12 Missense_Mutation p.D241N 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZN-01 5 35954490 35954490 G A UGT3A1 Silent p.I462I 0.47 TCGA-FS-A1ZN-01 5 67589664 67589664 T G PIK3R1 Splice_Site p.X475_splice 0.32 TCGA-FS-A1ZN-01 5 96443096 96443096 C T LIX1 Missense_Mutation p.E119K 0.50 tolerated(1) benign(0.016) TCGA-FS-A1ZN-01 6 112671403 112671403 G A RFPL4B Missense_Mutation p.E165K 0.40 deleterious(0.04) benign(0.317) TCGA-FS-A1ZN-01 6 117248601 117248601 C T RFX6 Missense_Mutation p.S766L 0.45 tolerated_low_confidence(0.09) benign(0.002) TCGA-FS-A1ZN-01 6 30156976 30156976 C T TRIM26 Missense_Mutation p.G302E 0.23 tolerated(0.71) probably_damaging(0.998) TCGA-FS-A1ZN-01 6 31610864 31610864 C T BAG6 Silent p.P565P 0.21 TCGA-FS-A1ZN-01 6 34985592 34985592 C T ANKS1A Missense_Mutation p.S589F 0.37 tolerated(0.26) benign(0.057) TCGA-FS-A1ZN-01 6 46806764 46806764 C T MEP1A Missense_Mutation p.A711V 0.16 tolerated(0.2) benign(0.015) TCGA-FS-A1ZN-01 6 47682279 47682279 C T GPR115 Missense_Mutation p.T433M 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A1ZN-01 6 6589096 6589096 G A LY86 Silent p.Q43Q 0.20 TCGA-FS-A1ZN-01 6 84303449 84303449 G A SNAP91 Missense_Mutation p.P482S 0.39 deleterious(0.03) possibly_damaging(0.641) TCGA-FS-A1ZN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZN-01 7 142131446 142131446 C T TRBV5-6 Silent p.G103G 0.48 TCGA-FS-A1ZN-01 7 2472823 2472823 C T CHST12 Silent p.I183I 0.48 TCGA-FS-A1ZN-01 7 82997096 82997096 C T SEMA3E Missense_Mutation p.E712K 0.38 deleterious(0.02) possibly_damaging(0.856) TCGA-FS-A1ZN-01 7 92355060 92355060 G A CDK6 Silent p.H139H 0.54 TCGA-FS-A1ZN-01 8 142367088 142367088 G A GPR20 Silent p.F312F 0.38 TCGA-FS-A1ZN-01 8 2823455 2823455 C T CSMD1 Missense_Mutation p.G3041D 0.33 probably_damaging(1) TCGA-FS-A1ZN-01 8 30210251 30210251 C T TUBBP1 RNA 0.57 TCGA-FS-A1ZN-01 8 48883186 48883186 C T MCM4 Missense_Mutation p.S517F 0.49 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZN-01 8 51705237 51705237 G A SNTG1 Missense_Mutation p.E468K 0.34 deleterious(0.05) possibly_damaging(0.831) TCGA-FS-A1ZN-01 8 77618106 77618106 C T ZFHX4 Missense_Mutation p.P595S 0.47 possibly_damaging(0.803) TCGA-FS-A1ZN-01 8 91081382 91081382 C T CALB1 Silent p.K105K 0.40 TCGA-FS-A1ZN-01 9 104356816 104356816 G A PPP3R2 Nonsense_Mutation p.Q133* 0.43 TCGA-FS-A1ZN-01 9 130672310 130672310 G A ST6GALNAC4 Silent p.T213T 0.41 TCGA-FS-A1ZN-01 9 78547391 78547391 G A PCSK5 Missense_Mutation p.E97K 0.43 deleterious(0) possibly_damaging(0.772) TCGA-FS-A1ZN-01 9 95993351 95993351 G A WNK2 Missense_Mutation p.A346T 0.46 unknown(0) TCGA-FS-A1ZN-01 X 105167175 105167175 C T NRK Silent p.G893G 0.88 TCGA-FS-A1ZN-01 X 36091273 36091273 G A CHDC2 Missense_Mutation p.E70K 1.00 tolerated(0.05) benign(0.177) TCGA-FS-A1ZN-01 X 76912109 76912109 C T ATRX Silent p.Q1385Q 0.94 TCGA-FS-A1ZP-06 10 101716647 101716647 G A DNMBP Missense_Mutation p.P195L 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 10 106152021 106152021 C T CCDC147 Missense_Mutation p.R466C 0.35 deleterious(0.04) probably_damaging(0.947) TCGA-FS-A1ZP-06 10 114849277 114849277 T C TCF7L2 Intron 0.37 TCGA-FS-A1ZP-06 10 115489090 115489090 C T CASP7 Missense_Mutation p.P268S 0.29 tolerated(0.56) benign(0.005) TCGA-FS-A1ZP-06 10 117061512 117061512 C T ATRNL1 Missense_Mutation p.P926L 0.37 deleterious(0) probably_damaging(0.957) TCGA-FS-A1ZP-06 10 118671344 118671344 G A KIAA1598 Missense_Mutation p.S439L 0.31 tolerated(0.27) benign(0.001) TCGA-FS-A1ZP-06 10 125805784 125805784 G A CHST15 5'UTR 0.42 TCGA-FS-A1ZP-06 10 129904640 129904640 G A MKI67 Missense_Mutation p.R1822C 0.29 deleterious(0.03) possibly_damaging(0.606) TCGA-FS-A1ZP-06 10 131638545 131638545 G A EBF3 Missense_Mutation p.P530S 0.50 deleterious_low_confidence(0.01) benign(0.434) TCGA-FS-A1ZP-06 10 135350614 135350614 C T CYP2E1 Missense_Mutation p.P339S 0.48 deleterious(0.01) possibly_damaging(0.865) TCGA-FS-A1ZP-06 10 20290822 20290822 G A PLXDC2 Silent p.T77T 0.42 TCGA-FS-A1ZP-06 10 21414799 21414799 C T C10orf113 Missense_Mutation p.E141K 0.41 tolerated_low_confidence(0.19) benign(0.016) TCGA-FS-A1ZP-06 10 46999708 46999708 G A GPRIN2 Silent p.V276V 0.28 TCGA-FS-A1ZP-06 10 49395281 49395281 C T FRMPD2 Missense_Mutation p.M740I 0.40 tolerated(0.19) benign(0.008) TCGA-FS-A1ZP-06 10 49440321 49440321 C T FRMPD2 Silent p.G335G 0.50 TCGA-FS-A1ZP-06 10 50827835 50827835 G A CHAT Missense_Mutation p.R151Q 0.41 tolerated(1) benign(0.002) TCGA-FS-A1ZP-06 10 51464892 51464892 C T AGAP7 Missense_Mutation p.E522K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 10 60549476 60549476 G A BICC1 Missense_Mutation p.G277E 0.35 deleterious(0.05) possibly_damaging(0.792) TCGA-FS-A1ZP-06 10 60558926 60558926 C T BICC1 Missense_Mutation p.P547S 0.39 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 10 60559999 60559999 G A BICC1 Missense_Mutation p.E591K 0.33 deleterious(0.02) benign(0.242) TCGA-FS-A1ZP-06 10 61029749 61029749 G A FAM13C Missense_Mutation p.S238L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 10 61833842 61833842 C T ANK3 Missense_Mutation p.R2266K 0.36 benign(0.011) TCGA-FS-A1ZP-06 10 69281711 69281711 C T CTNNA3 Silent p.R156R 0.38 TCGA-FS-A1ZP-06 10 81701173 81701173 C T SFTPD Silent p.K216K 0.24 TCGA-FS-A1ZP-06 10 84738862 84738862 G A NRG3 Silent p.T523T 0.42 TCGA-FS-A1ZP-06 10 91198935 91198935 C A SLC16A12 Nonsense_Mutation p.G152* 0.11 TCGA-FS-A1ZP-06 10 96043626 96043626 G A PLCE1 Silent p.K1625K 0.42 TCGA-FS-A1ZP-06 10 96798740 96798740 G A CYP2C8 Missense_Mutation p.P402L 0.37 deleterious(0.01) benign(0.257) TCGA-FS-A1ZP-06 10 96826994 96826994 C T CYP2C8 Missense_Mutation p.C151Y 0.38 tolerated(0.53) benign(0.129) TCGA-FS-A1ZP-06 11 111899614 111899614 C T DLAT Missense_Mutation p.S202L 0.39 tolerated(0.19) benign(0.002) TCGA-FS-A1ZP-06 11 113265743 113265743 C T ANKK1 Silent p.I191I 0.46 TCGA-FS-A1ZP-06 11 121500230 121500230 G A SORL1 Missense_Mutation p.M2201I 0.35 deleterious(0.03) probably_damaging(0.985) TCGA-FS-A1ZP-06 11 12263965 12263965 G A MICAL2 Missense_Mutation p.E848K 0.29 deleterious_low_confidence(0.03) benign(0.235) TCGA-FS-A1ZP-06 11 126396485 126396485 G A KIRREL3 Silent p.F77F 0.71 TCGA-FS-A1ZP-06 11 128781789 128781789 C T KCNJ5 Silent p.V207V 0.45 TCGA-FS-A1ZP-06 11 129306656 129306656 C T BARX2 Silent p.S66S 0.39 TCGA-FS-A1ZP-06 11 18158857 18158857 C T MRGPRX3 Silent p.I36I 0.39 TCGA-FS-A1ZP-06 11 18730998 18730998 C T IGSF22 Silent p.V978V 0.32 TCGA-FS-A1ZP-06 11 18956084 18956084 G A MRGPRX1 Missense_Mutation p.S83F 0.31 tolerated(0.14) benign(0.049) TCGA-FS-A1ZP-06 11 2606441 2606441 G A KCNQ1 Splice_Site p.X345_splice 0.30 TCGA-FS-A1ZP-06 11 2606443 2606443 G C KCNQ1 Missense_Mutation p.G345A 0.31 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZP-06 11 30253427 30253427 C T FSHB Intron 0.32 TCGA-FS-A1ZP-06 11 31329440 31329440 G A DCDC1 Silent p.S60S 0.40 TCGA-FS-A1ZP-06 11 46747657 46747657 G A F2 Missense_Mutation p.E270K 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 11 50003771 50003771 G A OR4C12 Silent p.I89I 0.35 TCGA-FS-A1ZP-06 11 5079927 5079927 C T OR52E2 Missense_Mutation p.E311K 0.39 tolerated(1) benign(0) TCGA-FS-A1ZP-06 11 5275676 5275676 G A HBG2 Missense_Mutation p.A54V 0.14 deleterious(0.01) possibly_damaging(0.889) TCGA-FS-A1ZP-06 11 5275723 5275723 C T HBG2 Nonsense_Mutation p.W38* 0.16 TCGA-FS-A1ZP-06 11 5322389 5322389 T A OR51B4 Missense_Mutation p.K263I 0.35 deleterious(0) probably_damaging(0.91) TCGA-FS-A1ZP-06 11 5322697 5322697 G A OR51B4 Silent p.L160L 0.41 TCGA-FS-A1ZP-06 11 5345000 5345000 G A OR51B2 Silent p.F176F 0.43 TCGA-FS-A1ZP-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.31 tolerated(0.65) benign(0.008) TCGA-FS-A1ZP-06 11 5411565 5411565 C A OR51M1 Missense_Mutation p.R313S 0.44 tolerated(0.11) benign(0.005) TCGA-FS-A1ZP-06 11 55681147 55681147 C T OR5W2 Silent p.L304L 0.50 TCGA-FS-A1ZP-06 11 55681516 55681516 G A OR5W2 Silent p.I181I 0.29 TCGA-FS-A1ZP-06 11 56230572 56230572 G A OR5M9 Silent p.F102F 0.43 TCGA-FS-A1ZP-06 11 5906378 5906378 C T OR52E4 Missense_Mutation p.P286S 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1ZP-06 11 59190346 59190346 G A OR5A2 Silent p.F27F 0.45 TCGA-FS-A1ZP-06 11 59480799 59480799 C T OR10V1 Missense_Mutation p.E174K 0.36 tolerated(0.11) benign(0.168) TCGA-FS-A1ZP-06 11 59610595 59610595 G A GIF Silent p.L92L 0.34 TCGA-FS-A1ZP-06 11 6007627 6007627 G A OR52L1 Silent p.P178P 0.29 TCGA-FS-A1ZP-06 11 60105226 60105226 C T MS4A6E Silent p.L54L 0.36 TCGA-FS-A1ZP-06 11 6129011 6129011 G A OR56B4 Translation_Start_Site p.M1? 0.41 deleterious(0) possibly_damaging(0.507) TCGA-FS-A1ZP-06 11 65272831 65272831 C A MALAT1 RNA 0.11 TCGA-FS-A1ZP-06 11 65793527 65793527 G A CATSPER1 Silent p.H108H 0.44 TCGA-FS-A1ZP-06 11 67219602 67219602 G A GPR152 Silent p.V198V 0.28 TCGA-FS-A1ZP-06 11 6897920 6897920 C T OR10A4 Silent p.L14L 0.36 TCGA-FS-A1ZP-06 11 72297172 72297172 G A PDE2A Missense_Mutation p.T375I 0.40 tolerated(0.25) benign(0.172) TCGA-FS-A1ZP-06 11 89868839 89868839 G A NAALAD2 Splice_Site p.X65_splice 0.54 TCGA-FS-A1ZP-06 11 94310540 94310540 C T PIWIL4 Missense_Mutation p.P132L 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 11 9530248 9530248 C T ZNF143 Silent p.V410V 0.33 TCGA-FS-A1ZP-06 11 99715598 99715598 G A CNTN5 Missense_Mutation p.G98R 0.40 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZP-06 12 100813667 100813667 C T SLC17A8 Silent p.V500V 0.32 TCGA-FS-A1ZP-06 12 103245521 103245521 C T PAH Missense_Mutation p.E286K 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 12 111353546 111353546 C T MYL2 Missense_Mutation p.D48N 0.40 deleterious(0.04) benign(0.395) TCGA-FS-A1ZP-06 12 122622068 122622068 C T MLXIP Silent p.S695S 0.46 TCGA-FS-A1ZP-06 12 13065068 13065068 C T GPRC5A Nonsense_Mutation p.Q325* 0.28 TCGA-FS-A1ZP-06 12 14982347 14982347 G A ART4 Silent p.S301S 0.29 TCGA-FS-A1ZP-06 12 21960321 21960321 G A ABCC9 Missense_Mutation p.L1470F 0.39 tolerated(0.26) benign(0.209) TCGA-FS-A1ZP-06 12 25311445 25311445 C T CASC1 Silent p.Q53Q 0.33 TCGA-FS-A1ZP-06 12 43824181 43824181 C T ADAMTS20 Missense_Mutation p.E1119K 0.43 deleterious(0.03) benign(0.138) TCGA-FS-A1ZP-06 12 43840439 43840439 G A ADAMTS20 Missense_Mutation p.S719L 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 12 46215212 46215212 C T ARID2 Missense_Mutation p.S216F 0.32 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZP-06 12 55420820 55420820 C T NEUROD4 Silent p.V199V 0.35 TCGA-FS-A1ZP-06 12 55759590 55759590 G A OR6C75 Silent p.R232R 0.35 TCGA-FS-A1ZP-06 12 56552317 56552317 T C MYL6 Intron 0.60 TCGA-FS-A1ZP-06 12 6091093 6091093 G A VWF Silent p.T2382T 0.44 TCGA-FS-A1ZP-06 12 66605284 66605284 C T IRAK3 Silent p.F165F 0.40 TCGA-FS-A1ZP-06 12 7021927 7021927 C T LRRC23 Silent p.A264A 0.30 TCGA-FS-A1ZP-06 12 72008476 72008476 G A ZFC3H1 Missense_Mutation p.L1789F 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 12 72969300 72969300 G A TRHDE Missense_Mutation p.D722N 0.34 tolerated(0.06) probably_damaging(0.964) TCGA-FS-A1ZP-06 12 7883483 7883483 C T CLEC4C Missense_Mutation p.R136K 0.34 tolerated(1) benign(0.004) TCGA-FS-A1ZP-06 13 100511253 100511253 C T CLYBL Missense_Mutation p.P130S 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 13 102029401 102029401 C T NALCN Missense_Mutation p.E128K 0.45 deleterious(0.01) probably_damaging(0.985) TCGA-FS-A1ZP-06 13 102521126 102521126 C T FGF14 Silent p.V124V 0.38 TCGA-FS-A1ZP-06 13 115089484 115089484 A T CHAMP1 Missense_Mutation p.Q56L 0.35 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZP-06 13 115089509 115089509 C T CHAMP1 Silent p.C64C 0.32 TCGA-FS-A1ZP-06 13 84455196 84455196 G A SLITRK1 Silent p.A149A 0.40 TCGA-FS-A1ZP-06 14 20528960 20528960 C T OR4L1 Missense_Mutation p.P253S 0.53 deleterious(0.01) probably_damaging(0.975) TCGA-FS-A1ZP-06 14 20612005 20612005 C T OR4N5 Silent p.I37I 0.26 TCGA-FS-A1ZP-06 14 20666112 20666112 C T OR11G2 Silent p.F206F 0.66 TCGA-FS-A1ZP-06 14 21794081 21794081 C T RPGRIP1 Missense_Mutation p.P820L 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.52 deleterious(0.04) benign(0.202) TCGA-FS-A1ZP-06 14 22237214 22237214 G A TRAV6 Silent p.R97R 0.55 TCGA-FS-A1ZP-06 14 22363157 22363157 G A TRAV8-4 Silent p.T96T 0.57 TCGA-FS-A1ZP-06 14 39722570 39722570 C T MIA2 3'UTR 0.88 TCGA-FS-A1ZP-06 14 42355819 42355819 C T LRFN5 5'UTR 0.48 TCGA-FS-A1ZP-06 14 58030955 58030955 C T SLC35F4 Silent p.K488K 0.43 TCGA-FS-A1ZP-06 14 58666890 58666890 T A ACTR10 5'UTR 0.47 TCGA-FS-A1ZP-06 14 63174288 63174288 C T KCNH5 Missense_Mutation p.D969N 0.37 tolerated_low_confidence(0.06) benign(0.255) TCGA-FS-A1ZP-06 14 64681167 64681167 C T SYNE2 Missense_Mutation p.P6438S 0.33 probably_damaging(1) TCGA-FS-A1ZP-06 14 64735629 64735629 C T ESR2 Missense_Mutation p.G179E 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 14 74360502 74360502 C T ZNF410 Silent p.L12L 0.42 TCGA-FS-A1ZP-06 14 74711882 74711882 C T VSX2 Missense_Mutation p.S157F 0.35 deleterious(0) possibly_damaging(0.908) TCGA-FS-A1ZP-06 14 86089489 86089489 C T FLRT2 Missense_Mutation p.A544V 0.34 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 14 96944945 96944945 G A AK7 Missense_Mutation p.D567N 0.45 tolerated(0.06) probably_damaging(0.971) TCGA-FS-A1ZP-06 15 100230539 100230539 C T MEF2A Missense_Mutation p.P257L 0.13 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZP-06 15 100591907 100591907 T C ADAMTS17 Silent p.G775G 0.11 TCGA-FS-A1ZP-06 15 25200198 25200198 G A SNURF Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.02) benign(0.024) TCGA-FS-A1ZP-06 15 25351739 25351739 G A SNORD116-29 RNA 0.44 TCGA-FS-A1ZP-06 15 37100597 37100597 C T C15orf41 Silent p.I263I 0.37 TCGA-FS-A1ZP-06 15 39881267 39881267 C T THBS1 Nonsense_Mutation p.Q585* 0.36 TCGA-FS-A1ZP-06 15 45258395 45258395 G A C15orf43 Missense_Mutation p.E130K 0.40 tolerated(0.6) benign(0.006) TCGA-FS-A1ZP-06 15 50786354 50786354 C T USP8 Silent p.I845I 0.40 TCGA-FS-A1ZP-06 15 51397368 51397368 C T TNFAIP8L3 Silent p.G2G 0.39 TCGA-FS-A1ZP-06 15 53908161 53908161 C T WDR72 Missense_Mutation p.E748K 0.43 deleterious(0.03) benign(0.15) TCGA-FS-A1ZP-06 15 64019986 64019986 G A HERC1 Missense_Mutation p.S1069F 0.40 possibly_damaging(0.775) TCGA-FS-A1ZP-06 15 79231504 79231504 T A CTSH Missense_Mutation p.H34L 0.10 tolerated(0.35) benign(0.001) TCGA-FS-A1ZP-06 15 91172622 91172622 C T CRTC3 Missense_Mutation p.S375F 0.74 deleterious(0) possibly_damaging(0.701) TCGA-FS-A1ZP-06 16 15180278 15180278 G A RRN3 Missense_Mutation p.R96C 0.25 deleterious(0) possibly_damaging(0.767) TCGA-FS-A1ZP-06 16 1573573 1573573 G A IFT140 Silent p.F1133F 0.59 TCGA-FS-A1ZP-06 16 17211628 17211628 G T XYLT1 Missense_Mutation p.P811H 0.59 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 16 22926460 22926460 C T HS3ST2 Silent p.T227T 0.60 TCGA-FS-A1ZP-06 16 24578597 24578597 C T RBBP6 Missense_Mutation p.P575S 0.28 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FS-A1ZP-06 16 2983269 2983269 G A FLYWCH1 Missense_Mutation p.C311Y 0.18 deleterious(0) benign(0.001) TCGA-FS-A1ZP-06 16 3827650 3827650 G A CREBBP Silent p.L708L 0.51 TCGA-FS-A1ZP-06 16 46766146 46766146 C T MYLK3 Missense_Mutation p.G479D 0.83 tolerated(0.66) benign(0.006) TCGA-FS-A1ZP-06 16 4802948 4802948 G A ZNF500 Missense_Mutation p.P291L 0.52 tolerated(0.38) benign(0) TCGA-FS-A1ZP-06 16 4802949 4802949 G A ZNF500 Missense_Mutation p.P291S 0.53 tolerated(0.66) benign(0.021) TCGA-FS-A1ZP-06 16 7568215 7568215 C T RBFOX1 Missense_Mutation p.P52S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZP-06 16 78062066 78062066 G A CLEC3A Missense_Mutation p.E69K 0.12 deleterious(0.02) possibly_damaging(0.751) TCGA-FS-A1ZP-06 16 84270534 84270534 C T KCNG4 Silent p.Q186Q 0.67 TCGA-FS-A1ZP-06 16 9923482 9923482 C T GRIN2A Missense_Mutation p.G602E 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 17 10359187 10359187 C T MYH4 Missense_Mutation p.R667K 0.36 tolerated(0.21) benign(0.014) TCGA-FS-A1ZP-06 17 10415239 10415239 G A MYH1 Missense_Mutation p.R445C 0.46 deleterious(0) benign(0.243) TCGA-FS-A1ZP-06 17 11659888 11659888 C T DNAH9 Silent p.L2248L 0.47 TCGA-FS-A1ZP-06 17 1381191 1381191 C A MYO1C Silent p.S492S 0.24 TCGA-FS-A1ZP-06 17 15643472 15643472 C T TBC1D26 Intron 0.45 TCGA-FS-A1ZP-06 17 18814463 18814463 A T PRPSAP2 Missense_Mutation p.H211L 0.37 deleterious(0.02) probably_damaging(0.931) TCGA-FS-A1ZP-06 17 26092669 26092669 C T NOS2 Missense_Mutation p.G774R 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 17 28889909 28889909 G A TBC1D29 Silent p.K67K 0.29 TCGA-FS-A1ZP-06 17 2911408 2911408 G A RAP1GAP2 Missense_Mutation p.G488E 0.45 deleterious(0) possibly_damaging(0.77) TCGA-FS-A1ZP-06 17 29576111 29576111 C T NF1 Nonsense_Mutation p.R1362* 0.38 TCGA-FS-A1ZP-06 17 39580551 39580551 A G KRT37 Silent p.T75T 0.35 TCGA-FS-A1ZP-06 17 41003774 41003774 G A AOC3 Silent p.V138V 0.40 TCGA-FS-A1ZP-06 17 41061382 41061382 G A G6PC Missense_Mutation p.R170Q 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 17 41244594 41244594 G A BRCA1 Missense_Mutation p.P985L 0.31 deleterious(0.01) possibly_damaging(0.781) TCGA-FS-A1ZP-06 17 42327841 42327841 C G SLC4A1 Silent p.V907V 0.16 TCGA-FS-A1ZP-06 17 42824500 42824500 C T DBF4B Missense_Mutation p.P294S 0.33 tolerated(0.08) possibly_damaging(0.869) TCGA-FS-A1ZP-06 17 4349427 4349427 G C SPNS3 Missense_Mutation p.D163H 0.50 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 17 44110807 44110807 G A KANSL1 Nonsense_Mutation p.Q896* 0.32 TCGA-FS-A1ZP-06 17 44952677 44952677 G A WNT9B Missense_Mutation p.G182E 0.25 tolerated(1) possibly_damaging(0.841) TCGA-FS-A1ZP-06 17 45199825 45199825 G A CDC27 Nonsense_Mutation p.Q799* 0.29 TCGA-FS-A1ZP-06 17 5045313 5045313 G A USP6 Missense_Mutation p.G530E 0.21 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZP-06 17 5462258 5462258 G A NLRP1 Silent p.F586F 0.28 TCGA-FS-A1ZP-06 17 67080471 67080471 C T ABCA6 Missense_Mutation p.G1429E 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-FS-A1ZP-06 17 72351328 72351328 G A KIF19 Silent p.G958G 0.29 TCGA-FS-A1ZP-06 17 74398146 74398146 G A UBE2O Missense_Mutation p.S250L 0.20 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZP-06 17 76503677 76503677 C T DNAH17 Missense_Mutation p.D1479N 0.36 possibly_damaging(0.718) TCGA-FS-A1ZP-06 17 79609381 79609381 G A TSPAN10 5'UTR 0.51 TCGA-FS-A1ZP-06 17 80041110 80041110 G A FASN Nonsense_Mutation p.Q1845* 0.28 TCGA-FS-A1ZP-06 17 80153205 80153205 C T CCDC57 Silent p.K184K 0.73 TCGA-FS-A1ZP-06 17 80153206 80153206 T C CCDC57 Missense_Mutation p.K184R 0.75 tolerated(0.38) benign(0.159) TCGA-FS-A1ZP-06 17 80400532 80400532 G A C17orf62 3'UTR 0.53 TCGA-FS-A1ZP-06 17 8243741 8243741 C T ODF4 Silent p.I124I 0.45 TCGA-FS-A1ZP-06 18 12699099 12699099 A G CEP76 Silent p.C133C 0.39 TCGA-FS-A1ZP-06 18 21512189 21512189 C T LAMA3 Missense_Mutation p.S2881F 0.38 benign(0.033) TCGA-FS-A1ZP-06 18 28935265 28935265 C T DSG1 Nonsense_Mutation p.R1036* 0.31 TCGA-FS-A1ZP-06 18 30260501 30260501 C T KLHL14 Missense_Mutation p.E434K 0.48 tolerated(0.74) possibly_damaging(0.812) TCGA-FS-A1ZP-06 18 30873194 30873194 C T CCDC178 Missense_Mutation p.E369K 0.37 deleterious(0.05) possibly_damaging(0.603) TCGA-FS-A1ZP-06 18 31318469 31318469 G A ASXL3 Silent p.E367E 0.29 TCGA-FS-A1ZP-06 18 31324164 31324164 G A ASXL3 Missense_Mutation p.G1451E 0.37 benign(0.016) TCGA-FS-A1ZP-06 18 31325550 31325550 T C ASXL3 Missense_Mutation p.V1913A 0.37 benign(0.174) TCGA-FS-A1ZP-06 18 31599311 31599311 C T NOL4 Missense_Mutation p.E343K 0.27 tolerated(0.21) possibly_damaging(0.716) TCGA-FS-A1ZP-06 18 42533069 42533069 C T SETBP1 Missense_Mutation p.P1255L 0.45 tolerated(0.18) benign(0.004) TCGA-FS-A1ZP-06 18 56204273 56204273 G A ALPK2 Missense_Mutation p.S1049F 0.27 tolerated(0.78) benign(0.001) TCGA-FS-A1ZP-06 18 56892886 56892886 C T GRP Missense_Mutation p.P101L 0.33 tolerated(0.75) benign(0.001) TCGA-FS-A1ZP-06 18 580810 580810 G A CETN1 Silent p.G134G 0.39 TCGA-FS-A1ZP-06 18 6301907 6301907 C T L3MBTL4 Missense_Mutation p.S41N 0.37 tolerated(0.14) benign(0.056) TCGA-FS-A1ZP-06 19 12976868 12976868 G A MAST1 Missense_Mutation p.E661K 0.45 deleterious(0) benign(0.254) TCGA-FS-A1ZP-06 19 13923913 13923913 C A ZSWIM4 Missense_Mutation p.P372Q 0.09 deleterious(0) possibly_damaging(0.904) TCGA-FS-A1ZP-06 19 15053093 15053093 C T OR7C2 Missense_Mutation p.P265S 0.37 tolerated_low_confidence(0.38) benign(0.006) TCGA-FS-A1ZP-06 19 15839501 15839501 C T OR10H2 Silent p.L216L 0.44 TCGA-FS-A1ZP-06 19 17752324 17752324 G A UNC13A Silent p.V838V 0.39 TCGA-FS-A1ZP-06 19 18232516 18232516 G C MAST3 Missense_Mutation p.K31N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 19 18778511 18778511 G A KLHL26 Missense_Mutation p.D102N 0.42 tolerated(0.37) benign(0.009) TCGA-FS-A1ZP-06 19 23159633 23159633 C T ZNF728 Missense_Mutation p.G169E 0.20 tolerated(0.2) benign(0.138) TCGA-FS-A1ZP-06 19 35827142 35827142 T C CD22 Missense_Mutation p.F206L 0.30 tolerated(0.35) benign(0.02) TCGA-FS-A1ZP-06 19 36219781 36219781 C T KMT2B Missense_Mutation p.P1560S 0.31 benign(0.407) TCGA-FS-A1ZP-06 19 3779419 3779419 C T MATK Missense_Mutation p.G321S 0.33 deleterious(0.03) probably_damaging(0.912) TCGA-FS-A1ZP-06 19 3779420 3779420 C T MATK Silent p.R320R 0.33 TCGA-FS-A1ZP-06 19 43429958 43429958 C T PSG7 Missense_Mutation p.E404K 0.48 tolerated(0.34) benign(0.281) TCGA-FS-A1ZP-06 19 45406291 45406291 T C TOMM40 Silent p.S317S 0.35 TCGA-FS-A1ZP-06 19 48733815 48733815 G A CARD8 Silent p.I305I 0.44 TCGA-FS-A1ZP-06 19 48879392 48879392 C T SYNGR4 Silent p.V174V 0.44 TCGA-FS-A1ZP-06 19 49685891 49685891 C T TRPM4 Silent p.F440F 0.26 TCGA-FS-A1ZP-06 19 50784919 50784919 C T MYH14 Silent p.R1453R 0.37 TCGA-FS-A1ZP-06 19 52130495 52130495 G A SIGLEC5 Missense_Mutation p.S430L 0.22 tolerated(0.19) benign(0.001) TCGA-FS-A1ZP-06 19 52272426 52272426 G A FPR2 Missense_Mutation p.G172E 0.38 tolerated(0.08) benign(0.443) TCGA-FS-A1ZP-06 19 53454821 53454821 G A ZNF816 Silent p.S69S 0.34 TCGA-FS-A1ZP-06 19 54312959 54312959 A G NLRP12 Missense_Mutation p.F652L 0.30 deleterious(0.01) benign(0.085) TCGA-FS-A1ZP-06 19 54803128 54803128 G A LILRA3 Silent p.S183S 0.40 TCGA-FS-A1ZP-06 19 56369766 56369766 C T NLRP4 Missense_Mutation p.S336F 0.37 deleterious(0.04) benign(0.015) TCGA-FS-A1ZP-06 19 56701378 56701378 C T ZSCAN5B Missense_Mutation p.E436K 0.40 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 19 57328348 57328348 G A PEG3 Missense_Mutation p.H488Y 0.38 deleterious(0) possibly_damaging(0.862) TCGA-FS-A1ZP-06 19 58489652 58489652 G A ZNF606 3'UTR 0.41 TCGA-FS-A1ZP-06 19 58988593 58988593 C T ZNF446 Missense_Mutation p.S3F 0.36 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZP-06 19 7585296 7585296 C T ZNF358 Missense_Mutation p.L390F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZP-06 19 7734321 7734321 G A RETN Missense_Mutation p.G37S 0.11 tolerated(1) benign(0.001) TCGA-FS-A1ZP-06 19 9050137 9050137 G A MUC16 Silent p.V10498V 0.47 TCGA-FS-A1ZP-06 19 9069570 9069570 G A MUC16 Missense_Mutation p.S5959F 0.44 unknown(0) TCGA-FS-A1ZP-06 19 9070578 9070578 G A MUC16 Missense_Mutation p.P5623L 0.44 unknown(0) TCGA-FS-A1ZP-06 19 9085435 9085435 G A MUC16 Missense_Mutation p.S2127L 0.36 unknown(0) TCGA-FS-A1ZP-06 1 108303475 108303475 C T VAV3 Silent p.G316G 0.24 TCGA-FS-A1ZP-06 1 110255773 110255773 G A GSTM5 Missense_Mutation p.E49K 0.30 deleterious(0.01) benign(0.245) TCGA-FS-A1ZP-06 1 115006056 115006056 G A TRIM33 Silent p.I256I 0.33 TCGA-FS-A1ZP-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.30 deleterious(0) benign(0.109) TCGA-FS-A1ZP-06 1 118583359 118583359 C T SPAG17 Missense_Mutation p.E1054K 0.45 tolerated(0.67) benign(0.015) TCGA-FS-A1ZP-06 1 119936435 119936435 G A HAO2 Missense_Mutation p.R343Q 0.39 tolerated(0.17) benign(0.06) TCGA-FS-A1ZP-06 1 12919847 12919847 G A PRAMEF2 Missense_Mutation p.R196K 0.40 tolerated(0.7) benign(0.002) TCGA-FS-A1ZP-06 1 147380566 147380566 G A GJA8 Missense_Mutation p.E162K 0.65 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 1 150280734 150280734 C T MRPS21 3'UTR 0.23 TCGA-FS-A1ZP-06 1 152275460 152275460 C T FLG Missense_Mutation p.G3968S 0.18 unknown(0) TCGA-FS-A1ZP-06 1 152732378 152732378 C T KPRP Missense_Mutation p.S105F 0.21 deleterious(0) benign(0.413) TCGA-FS-A1ZP-06 1 155686885 155686885 C T DAP3 Missense_Mutation p.P45L 0.21 tolerated(0.08) benign(0.009) TCGA-FS-A1ZP-06 1 156880096 156880096 G A PEAR1 Silent p.K583K 0.71 TCGA-FS-A1ZP-06 1 157490968 157490968 C T FCRL5 Missense_Mutation p.R785Q 0.67 tolerated(0.39) benign(0.046) TCGA-FS-A1ZP-06 1 157559066 157559066 C T FCRL4 Missense_Mutation p.E79K 0.74 tolerated(0.93) benign(0.003) TCGA-FS-A1ZP-06 1 157670327 157670327 C T FCRL3 5'UTR 0.24 TCGA-FS-A1ZP-06 1 159410436 159410436 C T OR10J1 Silent p.N296N 0.65 TCGA-FS-A1ZP-06 1 159505215 159505215 C T OR10J5 Missense_Mutation p.E195K 0.16 deleterious(0.02) probably_damaging(0.955) TCGA-FS-A1ZP-06 1 16095057 16095057 C T FBLIM1 Missense_Mutation p.P158L 0.37 tolerated(0.2) probably_damaging(0.958) TCGA-FS-A1ZP-06 1 161022471 161022471 C T ARHGAP30 Missense_Mutation p.D261N 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-FS-A1ZP-06 1 162343660 162343660 C T C1orf111 3'UTR 0.44 TCGA-FS-A1ZP-06 1 16525052 16525052 G A ARHGEF19 3'UTR 0.30 TCGA-FS-A1ZP-06 1 167962515 167962515 C T DCAF6 Missense_Mutation p.S247F 0.20 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZP-06 1 176661302 176661302 C T PAPPA2 Silent p.A824A 0.12 TCGA-FS-A1ZP-06 1 179354411 179354411 C T AXDND1 Silent p.T260T 0.23 TCGA-FS-A1ZP-06 1 17950950 17950950 C T ARHGEF10L Silent p.I423I 0.38 TCGA-FS-A1ZP-06 1 180166346 180166346 C T QSOX1 3'UTR 0.15 TCGA-FS-A1ZP-06 1 181767666 181767666 C T CACNA1E Missense_Mutation p.S2213F 0.69 tolerated(0.08) benign(0.039) TCGA-FS-A1ZP-06 1 190203593 190203593 C A BRINP3 Silent p.R211R 0.23 TCGA-FS-A1ZP-06 1 19577956 19577956 C T EMC1 Silent p.L16L 0.23 TCGA-FS-A1ZP-06 1 196311223 196311223 G A KCNT2 Silent p.F513F 0.70 TCGA-FS-A1ZP-06 1 203316738 203316738 C T FMOD Missense_Mutation p.G221S 0.63 tolerated(0.13) possibly_damaging(0.896) TCGA-FS-A1ZP-06 1 204985485 204985485 A C NFASC Missense_Mutation p.T1181P 0.55 deleterious(0) unknown(0) TCGA-FS-A1ZP-06 1 205308796 205308796 G A KLHDC8A Nonsense_Mutation p.R173* 0.31 TCGA-FS-A1ZP-06 1 205308797 205308797 G A KLHDC8A Silent p.L172L 0.31 TCGA-FS-A1ZP-06 1 206944372 206944372 C T IL10 Missense_Mutation p.M86I 0.15 tolerated(0.08) probably_damaging(1) TCGA-FS-A1ZP-06 1 214170203 214170203 C G PROX1 Missense_Mutation p.P109A 0.72 tolerated(0.38) benign(0.083) TCGA-FS-A1ZP-06 1 222695865 222695865 T A HHIPL2 3'UTR 0.66 TCGA-FS-A1ZP-06 1 228033739 228033739 A G PRSS38 Missense_Mutation p.N271D 0.68 tolerated(0.11) benign(0.173) TCGA-FS-A1ZP-06 1 233275548 233275548 C T PCNXL2 Missense_Mutation p.E1191K 0.66 deleterious(0) probably_damaging(0.96) TCGA-FS-A1ZP-06 1 235600750 235600750 C T TBCE Silent p.I359I 0.18 TCGA-FS-A1ZP-06 1 238049104 238049104 G A ZP4 Missense_Mutation p.P308S 0.22 deleterious(0.05) possibly_damaging(0.718) TCGA-FS-A1ZP-06 1 241680603 241680603 G A FH Missense_Mutation p.S49F 0.12 deleterious_low_confidence(0) benign(0.261) TCGA-FS-A1ZP-06 1 247587438 247587438 G A NLRP3 Silent p.G231G 0.18 TCGA-FS-A1ZP-06 1 248437021 248437021 G A OR2T33 Silent p.I32I 0.11 TCGA-FS-A1ZP-06 1 248844733 248844733 C T OR14I1 Silent p.R291R 0.14 TCGA-FS-A1ZP-06 1 25228878 25228878 G A RUNX3 Missense_Mutation p.S342F 0.32 deleterious(0) possibly_damaging(0.73) TCGA-FS-A1ZP-06 1 28785771 28785771 T G PHACTR4 Splice_Site p.X74_splice 0.33 TCGA-FS-A1ZP-06 1 31902327 31902327 T G SERINC2 Missense_Mutation p.W328G 0.36 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZP-06 1 34038143 34038143 G A CSMD2 Silent p.G2577G 0.37 TCGA-FS-A1ZP-06 1 34049275 34049275 C T CSMD2 Missense_Mutation p.E2405K 0.37 deleterious(0.03) possibly_damaging(0.858) TCGA-FS-A1ZP-06 1 36938262 36938262 C T CSF3R Silent p.R233R 0.70 TCGA-FS-A1ZP-06 1 39753053 39753053 C T MACF1 Missense_Mutation p.P540L 0.37 benign(0.004) TCGA-FS-A1ZP-06 1 42865086 42865086 A G RIMKLA Missense_Mutation p.N59D 0.28 tolerated(0.69) benign(0.003) TCGA-FS-A1ZP-06 1 45472388 45472388 G A HECTD3 Silent p.P567P 0.35 TCGA-FS-A1ZP-06 1 47283674 47283674 G A CYP4B1 Silent p.R415R 0.33 TCGA-FS-A1ZP-06 1 47533279 47533279 G A CYP4Z1 Missense_Mutation p.M39I 0.36 deleterious(0.04) benign(0) TCGA-FS-A1ZP-06 1 47603320 47603320 C T CYP4A22 Missense_Mutation p.P55S 0.33 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZP-06 1 53237304 53237304 C T ZYG11B Missense_Mutation p.S270F 0.43 deleterious(0) possibly_damaging(0.9) TCGA-FS-A1ZP-06 1 67105490 67105490 T C SGIP1 Missense_Mutation p.Y68H 0.34 deleterious(0) probably_damaging(0.986) TCGA-FS-A1ZP-06 1 67895945 67895945 G C SERBP1 Silent p.V13V 0.26 TCGA-FS-A1ZP-06 1 68948981 68948981 G A DEPDC1 Intron 0.32 TCGA-FS-A1ZP-06 1 71478162 71478162 C T PTGER3 Missense_Mutation p.M301I 0.40 tolerated(0.17) benign(0.06) TCGA-FS-A1ZP-06 1 86210432 86210432 C T COL24A1 Missense_Mutation p.S1530N 0.37 deleterious(0) possibly_damaging(0.448) TCGA-FS-A1ZP-06 1 86308024 86308024 C T COL24A1 Missense_Mutation p.R1172K 0.31 tolerated(0.58) benign(0.124) TCGA-FS-A1ZP-06 1 87045664 87045664 A T CLCA4 Missense_Mutation p.D799V 0.33 deleterious(0.01) possibly_damaging(0.704) TCGA-FS-A1ZP-06 1 98039412 98039412 C T DPYD Missense_Mutation p.E415K 0.37 tolerated(0.18) benign(0.003) TCGA-FS-A1ZP-06 1 98165083 98165083 G A DPYD Silent p.I168I 0.35 TCGA-FS-A1ZP-06 1 9931303 9931303 G A CTNNBIP1 Silent p.T43T 0.42 TCGA-FS-A1ZP-06 20 10279981 10279981 G A SNAP25 Missense_Mutation p.G158E 0.49 deleterious(0) possibly_damaging(0.907) TCGA-FS-A1ZP-06 20 15412056 15412056 C T MACROD2 Missense_Mutation p.P183S 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-FS-A1ZP-06 20 1552513 1552513 C T SIRPB1 Missense_Mutation p.D202N 0.37 tolerated(0.38) benign(0.038) TCGA-FS-A1ZP-06 20 2463916 2463916 A T ZNF343 Missense_Mutation p.L564H 0.39 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZP-06 20 35060251 35060251 C T DLGAP4 Missense_Mutation p.A44V 0.45 tolerated(0.46) benign(0.176) TCGA-FS-A1ZP-06 20 35060258 35060258 C T DLGAP4 Silent p.F46F 0.43 TCGA-FS-A1ZP-06 20 3728911 3728911 G A HSPA12B Silent p.L241L 0.31 TCGA-FS-A1ZP-06 20 43927082 43927082 C T MATN4 Missense_Mutation p.G385E 0.40 probably_damaging(0.999) TCGA-FS-A1ZP-06 20 44641983 44641983 A C MMP9 Missense_Mutation p.T474P 0.35 tolerated(0.16) benign(0.011) TCGA-FS-A1ZP-06 20 45192189 45192189 G A SLC13A3 Missense_Mutation p.A499V 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 20 45702966 45702966 C T EYA2 Missense_Mutation p.S218L 0.30 tolerated(0.29) benign(0.004) TCGA-FS-A1ZP-06 20 45867749 45867749 G A ZMYND8 Silent p.T806T 0.47 TCGA-FS-A1ZP-06 20 49576008 49576008 G A MOCS3 Missense_Mutation p.G210D 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 20 50407595 50407595 G A SALL4 Missense_Mutation p.P476L 0.45 deleterious(0.01) benign(0.126) TCGA-FS-A1ZP-06 20 56728607 56728607 C G C20orf85 Missense_Mutation p.R26G 0.35 tolerated(0.11) possibly_damaging(0.81) TCGA-FS-A1ZP-06 20 62421760 62421760 G A ZBTB46 Silent p.I117I 0.57 TCGA-FS-A1ZP-06 21 10906987 10906987 C T TPTE Missense_Mutation p.R525K 0.10 tolerated(1) benign(0) TCGA-FS-A1ZP-06 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.12 deleterious(0.01) benign(0.021) TCGA-FS-A1ZP-06 21 15870823 15870823 C T SAMSN1 Missense_Mutation p.E355K 0.33 tolerated(0.46) benign(0.002) TCGA-FS-A1ZP-06 21 43767708 43767708 C T TFF2 Missense_Mutation p.R88Q 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 21 45860701 45860701 G A TRPM2 Silent p.R1433R 0.38 TCGA-FS-A1ZP-06 22 17073287 17073287 C T CCT8L2 Missense_Mutation p.G52S 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 22 18020395 18020395 C T CECR2 Missense_Mutation p.P576L 0.29 tolerated(0.37) benign(0.002) TCGA-FS-A1ZP-06 22 20929492 20929492 C T MED15 Silent p.I415I 0.49 TCGA-FS-A1ZP-06 22 37975947 37975947 C T LGALS2 5'UTR 0.34 TCGA-FS-A1ZP-06 22 42606603 42606603 G A TCF20 Missense_Mutation p.S1570F 0.37 benign(0.323) TCGA-FS-A1ZP-06 22 43089715 43089715 G A A4GALT Silent p.F81F 0.40 TCGA-FS-A1ZP-06 22 50277355 50277355 C T ZBED4 Silent p.F15F 0.61 TCGA-FS-A1ZP-06 2 101644812 101644812 G A TBC1D8 Missense_Mutation p.P754S 0.58 tolerated(0.23) benign(0.015) TCGA-FS-A1ZP-06 2 107450538 107450538 C T ST6GAL2 Silent p.G336G 0.34 TCGA-FS-A1ZP-06 2 112777075 112777075 G A MERTK Missense_Mutation p.R722Q 0.35 deleterious(0) possibly_damaging(0.9) TCGA-FS-A1ZP-06 2 121746901 121746901 G A GLI2 Silent p.L1137L 0.38 TCGA-FS-A1ZP-06 2 130832395 130832395 C T POTEF Missense_Mutation p.E884K 0.64 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-FS-A1ZP-06 2 131883323 131883323 C T PLEKHB2 Intron 0.34 TCGA-FS-A1ZP-06 2 137928435 137928435 G A THSD7B Silent p.G550G 0.52 TCGA-FS-A1ZP-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.41 deleterious(0.02) unknown(0) TCGA-FS-A1ZP-06 2 141607715 141607715 C T LRP1B Missense_Mutation p.R1632Q 0.35 possibly_damaging(0.553) TCGA-FS-A1ZP-06 2 141625375 141625375 C T LRP1B Missense_Mutation p.D1455N 0.40 possibly_damaging(0.539) TCGA-FS-A1ZP-06 2 1480882 1480882 G A TPO Missense_Mutation p.A282T 0.38 tolerated(0.51) benign(0.036) TCGA-FS-A1ZP-06 2 152515633 152515633 C A NEB Missense_Mutation p.M2007I 0.34 benign(0.16) TCGA-FS-A1ZP-06 2 166848500 166848500 C T SCN1A Missense_Mutation p.G1762E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 2 166900412 166900412 G A SCN1A Missense_Mutation p.R604C 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 2 17698568 17698568 T C RAD51AP2 Missense_Mutation p.N372S 0.38 tolerated(0.15) benign(0.187) TCGA-FS-A1ZP-06 2 177017509 177017509 C T HOXD4 Nonsense_Mutation p.Q203* 0.42 TCGA-FS-A1ZP-06 2 179427302 179427302 C T TTN Missense_Mutation p.E27853K 0.46 TCGA-FS-A1ZP-06 2 179542585 179542585 G A TTN Silent p.L11352L 0.41 TCGA-FS-A1ZP-06 2 179546404 179546404 C T TTN Silent p.K11052K 0.43 TCGA-FS-A1ZP-06 2 179589021 179589021 C T TTN Silent p.G7027G 0.39 TCGA-FS-A1ZP-06 2 179612727 179612727 C T TTN Intron 0.33 TCGA-FS-A1ZP-06 2 188211048 188211048 G A CALCRL Missense_Mutation p.R417C 0.33 deleterious(0) possibly_damaging(0.899) TCGA-FS-A1ZP-06 2 190439931 190439931 C T SLC40A1 Missense_Mutation p.G76E 0.41 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZP-06 2 191927508 191927508 C T STAT4 Silent p.L307L 0.33 TCGA-FS-A1ZP-06 2 1926121 1926121 G A MYT1L Missense_Mutation p.P474S 0.36 tolerated(0.7) benign(0.004) TCGA-FS-A1ZP-06 2 204824389 204824389 C T ICOS 3'UTR 0.31 TCGA-FS-A1ZP-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-FS-A1ZP-06 2 216262425 216262425 T C FN1 Silent p.P1165P 0.35 TCGA-FS-A1ZP-06 2 225657702 225657702 G A DOCK10 Missense_Mutation p.P1767L 0.49 tolerated(0.51) benign(0.013) TCGA-FS-A1ZP-06 2 231775270 231775270 C T GPR55 Silent p.R136R 0.31 TCGA-FS-A1ZP-06 2 234085942 234085942 G A INPP5D Missense_Mutation p.R662Q 0.32 deleterious(0) probably_damaging(0.946) TCGA-FS-A1ZP-06 2 237149963 237149963 C T ASB18 Missense_Mutation p.M96I 0.27 deleterious(0.03) benign(0.315) TCGA-FS-A1ZP-06 2 242573101 242573101 C T THAP4 Silent p.A157A 0.36 TCGA-FS-A1ZP-06 2 31595155 31595155 G A XDH Missense_Mutation p.R599C 0.38 tolerated(0.21) benign(0.003) TCGA-FS-A1ZP-06 2 33412139 33412139 G A LTBP1 Missense_Mutation p.G473E 0.24 deleterious(0) possibly_damaging(0.797) TCGA-FS-A1ZP-06 2 50724509 50724509 C T NRXN1 Silent p.G987G 0.36 TCGA-FS-A1ZP-06 2 7030343 7030343 G A RSAD2 Missense_Mutation p.G259R 0.30 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZP-06 2 74274397 74274397 C T TET3 Silent p.P316P 0.39 TCGA-FS-A1ZP-06 3 101378854 101378854 G A ZBTB11 Nonsense_Mutation p.Q607* 0.33 TCGA-FS-A1ZP-06 3 10146202 10146202 C T FANCD2OS Missense_Mutation p.G86E 0.33 tolerated(0.59) benign(0.051) TCGA-FS-A1ZP-06 3 113890624 113890624 A G DRD3 Silent p.A72A 0.36 TCGA-FS-A1ZP-06 3 115395218 115395218 C T GAP43 Missense_Mutation p.S166F 0.44 deleterious(0) possibly_damaging(0.596) TCGA-FS-A1ZP-06 3 123385073 123385073 C T MYLK Missense_Mutation p.R1275Q 0.34 deleterious(0) benign(0.006) TCGA-FS-A1ZP-06 3 128339278 128339278 G A RPN1 Silent p.I600I 0.23 TCGA-FS-A1ZP-06 3 130463913 130463913 G A PIK3R4 Silent p.V50V 0.32 TCGA-FS-A1ZP-06 3 133478161 133478161 C T TF Silent p.I397I 0.36 TCGA-FS-A1ZP-06 3 151102860 151102860 C T MED12L Nonsense_Mutation p.R1622* 0.29 TCGA-FS-A1ZP-06 3 155203356 155203356 C T PLCH1 Silent p.R929R 0.41 TCGA-FS-A1ZP-06 3 165504094 165504094 G A BCHE Missense_Mutation p.P508L 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 3 167045778 167045778 C T ZBBX Missense_Mutation p.G272R 0.35 tolerated(0.06) benign(0.141) TCGA-FS-A1ZP-06 3 167218038 167218038 C T WDR49 Silent p.V626V 0.34 TCGA-FS-A1ZP-06 3 167223161 167223161 C T WDR49 Missense_Mutation p.E588K 0.22 tolerated(0.09) benign(0.01) TCGA-FS-A1ZP-06 3 183907661 183907661 C T ABCF3 Missense_Mutation p.R445C 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 3 183995786 183995786 G A ECE2 Silent p.V302V 0.35 TCGA-FS-A1ZP-06 3 187446907 187446907 G A BCL6 Missense_Mutation p.T429I 0.37 tolerated(0.19) benign(0.358) TCGA-FS-A1ZP-06 3 190999893 190999893 C T UTS2B Missense_Mutation p.R29Q 0.17 tolerated(0.53) benign(0.003) TCGA-FS-A1ZP-06 3 193052847 193052847 C T ATP13A5 Missense_Mutation p.E329K 0.36 tolerated(0.42) possibly_damaging(0.555) TCGA-FS-A1ZP-06 3 193855511 193855511 G A HES1 Missense_Mutation p.R111Q 0.16 deleterious(0.04) possibly_damaging(0.832) TCGA-FS-A1ZP-06 3 26751153 26751153 G A LRRC3B 5'UTR 0.40 TCGA-FS-A1ZP-06 3 3067938 3067938 G A CNTN4 Missense_Mutation p.D547N 0.38 tolerated(0.2) benign(0.036) TCGA-FS-A1ZP-06 3 38783863 38783863 G A SCN10A Silent p.I675I 0.36 TCGA-FS-A1ZP-06 3 38924806 38924806 C T SCN11A Missense_Mutation p.R1046Q 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 3 407668 407668 C T CHL1 Missense_Mutation p.R541C 0.46 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZP-06 3 42728221 42728221 G A KLHL40 Missense_Mutation p.E371K 0.23 deleterious(0.02) benign(0.221) TCGA-FS-A1ZP-06 3 44943190 44943190 G A TGM4 Missense_Mutation p.V278M 0.21 deleterious(0.02) possibly_damaging(0.552) TCGA-FS-A1ZP-06 3 46009380 46009380 G A FYCO1 Silent p.S482S 0.43 TCGA-FS-A1ZP-06 3 46399292 46399292 C A CCR2 Missense_Mutation p.L92I 0.32 tolerated(0.15) benign(0.085) TCGA-FS-A1ZP-06 3 50816191 50816191 T G DOCK3 Splice_Site p.X41_splice 0.50 TCGA-FS-A1ZP-06 3 51101978 51101978 G A DOCK3 Missense_Mutation p.V139M 0.32 tolerated(1) possibly_damaging(0.646) TCGA-FS-A1ZP-06 3 54871252 54871252 G A CACNA2D3 Missense_Mutation p.E489K 0.33 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZP-06 3 56468689 56468689 G A ERC2 Missense_Mutation p.S116L 0.36 deleterious(0.04) benign(0.101) TCGA-FS-A1ZP-06 3 65364976 65364976 G A MAGI1 Silent p.I985I 0.44 TCGA-FS-A1ZP-06 3 97202786 97202786 C T EPHA6 Missense_Mutation p.P695S 0.30 deleterious(0.05) benign(0.069) TCGA-FS-A1ZP-06 3 98188784 98188784 C T OR5K1 Missense_Mutation p.R122C 0.39 deleterious(0.01) benign(0.029) TCGA-FS-A1ZP-06 4 113352855 113352855 C T ALPK1 Missense_Mutation p.R718C 0.51 tolerated(0.08) benign(0) TCGA-FS-A1ZP-06 4 114276157 114276157 C T ANK2 Missense_Mutation p.P2128L 0.44 probably_damaging(1) TCGA-FS-A1ZP-06 4 123264594 123264594 C T KIAA1109 Nonsense_Mutation p.R4128* 0.35 TCGA-FS-A1ZP-06 4 123813584 123813584 G A FGF2 3'UTR 0.39 TCGA-FS-A1ZP-06 4 140810856 140810856 G A MAML3 Silent p.I578I 0.37 TCGA-FS-A1ZP-06 4 141545347 141545347 G A TBC1D9 Missense_Mutation p.R1001C 0.34 deleterious(0.01) possibly_damaging(0.8) TCGA-FS-A1ZP-06 4 151388899 151388899 G A LRBA Missense_Mutation p.P2247S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 4 153897163 153897163 C T FHDC1 Missense_Mutation p.P907L 0.30 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZP-06 4 158041787 158041787 G A GLRB Missense_Mutation p.D68N 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1ZP-06 4 159569761 159569761 G A RXFP1 Missense_Mutation p.E623K 0.46 deleterious(0) possibly_damaging(0.644) TCGA-FS-A1ZP-06 4 167656143 167656143 C T SPOCK3 Missense_Mutation p.E414K 0.48 tolerated_low_confidence(0.2) unknown(0) TCGA-FS-A1ZP-06 4 174294556 174294556 A T SAP30 Missense_Mutation p.I111L 0.28 deleterious(0.02) possibly_damaging(0.768) TCGA-FS-A1ZP-06 4 175897079 175897079 G A ADAM29 Missense_Mutation p.E135K 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-FS-A1ZP-06 4 175897258 175897258 G A ADAM29 Nonsense_Mutation p.W194* 0.37 TCGA-FS-A1ZP-06 4 176594896 176594896 C T GPM6A Missense_Mutation p.G108R 0.25 deleterious(0.05) probably_damaging(1) TCGA-FS-A1ZP-06 4 20493518 20493518 G A SLIT2 Missense_Mutation p.E304K 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 4 20541135 20541135 T A SLIT2 Missense_Mutation p.L635H 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 4 26417194 26417194 C T RBPJ Nonsense_Mutation p.Q98* 0.39 TCGA-FS-A1ZP-06 4 3451175 3451175 C T HGFAC 3'UTR 0.43 TCGA-FS-A1ZP-06 4 44177155 44177155 G A KCTD8 Silent p.S358S 0.36 TCGA-FS-A1ZP-06 4 44624578 44624578 G A YIPF7 Silent p.I232I 0.28 TCGA-FS-A1ZP-06 4 47427982 47427982 C T GABRB1 Missense_Mutation p.P458S 0.44 deleterious(0.04) probably_damaging(0.975) TCGA-FS-A1ZP-06 4 54294256 54294256 C T FIP1L1 Silent p.F360F 0.42 TCGA-FS-A1ZP-06 4 57209798 57209798 G A AASDH Missense_Mutation p.P902L 0.37 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZP-06 4 57860646 57860646 C T POLR2B Missense_Mutation p.P107L 0.47 tolerated(0.15) benign(0.392) TCGA-FS-A1ZP-06 4 6087196 6087196 C T JAKMIP1 Missense_Mutation p.R262K 0.28 tolerated(0.14) benign(0.004) TCGA-FS-A1ZP-06 4 62903453 62903453 G A LPHN3 Missense_Mutation p.R1131Q 0.45 tolerated(0.23) benign(0.069) TCGA-FS-A1ZP-06 4 6302868 6302868 C T WFS1 Missense_Mutation p.T449I 0.39 tolerated(0.07) benign(0.268) TCGA-FS-A1ZP-06 4 6304159 6304159 C T WFS1 Silent p.F879F 0.39 TCGA-FS-A1ZP-06 4 69093661 69093661 G A TMPRSS11B Missense_Mutation p.R407C 0.39 deleterious(0.01) benign(0.024) TCGA-FS-A1ZP-06 4 75937961 75937961 G A PARM1 Missense_Mutation p.E124K 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-FS-A1ZP-06 4 76452433 76452433 C T THAP6 3'UTR 0.27 TCGA-FS-A1ZP-06 4 88415018 88415018 C T SPARCL1 Missense_Mutation p.E312K 0.47 tolerated(0.19) benign(0.021) TCGA-FS-A1ZP-06 4 99428861 99428861 G C TSPAN5 Missense_Mutation p.L34V 0.13 tolerated(0.09) benign(0.019) TCGA-FS-A1ZP-06 5 101834635 101834635 G A SLCO6A1 5'UTR 0.52 TCGA-FS-A1ZP-06 5 102508931 102508931 C T PPIP5K2 Missense_Mutation p.R787C 0.32 deleterious(0) probably_damaging(0.921) TCGA-FS-A1ZP-06 5 128326113 128326113 C T SLC27A6 Nonsense_Mutation p.Q309* 0.31 TCGA-FS-A1ZP-06 5 137424723 137424723 C T WNT8A Silent p.L159L 0.41 TCGA-FS-A1ZP-06 5 137680896 137680896 C T FAM53C Silent p.L173L 0.30 TCGA-FS-A1ZP-06 5 13777321 13777321 G A DNAH5 Missense_Mutation p.S3032L 0.42 possibly_damaging(0.637) TCGA-FS-A1ZP-06 5 137896731 137896731 T C HSPA9 Intron 0.29 TCGA-FS-A1ZP-06 5 13842004 13842004 G A DNAH5 Nonsense_Mutation p.R1761* 0.39 TCGA-FS-A1ZP-06 5 140255090 140255090 C T PCDHA12 Silent p.S11S 0.33 TCGA-FS-A1ZP-06 5 140475751 140475751 C T PCDHB2 Silent p.T459T 0.29 TCGA-FS-A1ZP-06 5 140553534 140553534 G A PCDHB7 Missense_Mutation p.R373K 0.32 tolerated_low_confidence(0.58) benign(0.011) TCGA-FS-A1ZP-06 5 140595977 140595977 C T PCDHB13 Missense_Mutation p.T761I 0.25 tolerated_low_confidence(0.07) benign(0.015) TCGA-FS-A1ZP-06 5 140772546 140772546 C T PCDHGA8 Missense_Mutation p.P56S 0.24 tolerated_low_confidence(0.12) benign(0.107) TCGA-FS-A1ZP-06 5 141307820 141307820 C T KIAA0141 Silent p.P123P 0.40 TCGA-FS-A1ZP-06 5 1421994 1421994 C T SLC6A3 Silent p.G263G 0.34 TCGA-FS-A1ZP-06 5 147498037 147498037 G A SPINK5 Missense_Mutation p.G717E 0.49 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 5 150518926 150518926 G A ANXA6 Silent p.S64S 0.19 TCGA-FS-A1ZP-06 5 151784782 151784782 G A NMUR2 5'UTR 0.33 TCGA-FS-A1ZP-06 5 156907936 156907936 G A ADAM19 3'UTR 0.28 TCGA-FS-A1ZP-06 5 161113261 161113261 G A GABRA6 Missense_Mutation p.E22K 0.44 tolerated_low_confidence(1) benign(0) TCGA-FS-A1ZP-06 5 161119083 161119083 C T GABRA6 Silent p.F321F 0.36 TCGA-FS-A1ZP-06 5 168179971 168179971 G A SLIT3 Silent p.S654S 0.64 TCGA-FS-A1ZP-06 5 180374696 180374696 C T BTNL8 Intron 0.33 TCGA-FS-A1ZP-06 5 180475028 180475028 G A BTNL9 Missense_Mutation p.E71K 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZP-06 5 182231 182231 C T PLEKHG4B Silent p.S1203S 0.37 TCGA-FS-A1ZP-06 5 32048645 32048645 G T PDZD2 Missense_Mutation p.G507V 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 5 33951576 33951576 G A SLC45A2 Intron 0.33 TCGA-FS-A1ZP-06 5 35035329 35035329 G A AGXT2 Silent p.F193F 0.33 TCGA-FS-A1ZP-06 5 35740049 35740049 G A SPEF2 Nonsense_Mutation p.W1031* 0.32 TCGA-FS-A1ZP-06 5 35740050 35740050 G A SPEF2 Nonsense_Mutation p.W1031* 0.32 TCGA-FS-A1ZP-06 5 37108561 37108561 G A C5orf42 Missense_Mutation p.P3084L 0.37 tolerated(0.09) benign(0.048) TCGA-FS-A1ZP-06 5 37725129 37725129 C T WDR70 Missense_Mutation p.P564L 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 5 39341799 39341799 G A C9 Missense_Mutation p.R63C 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 5 41054920 41054920 G A MROH2B Silent p.I352I 0.30 TCGA-FS-A1ZP-06 5 5146299 5146299 G A ADAMTS16 Missense_Mutation p.E78K 0.48 deleterious(0.04) benign(0.315) TCGA-FS-A1ZP-06 5 76621535 76621535 G A PDE8B Missense_Mutation p.D191N 0.38 deleterious(0.01) benign(0.027) TCGA-FS-A1ZP-06 6 100368841 100368841 C T MCHR2 Missense_Mutation p.G333E 0.28 tolerated(1) benign(0) TCGA-FS-A1ZP-06 6 12123060 12123060 T C HIVEP1 Missense_Mutation p.L1011P 0.66 deleterious(0.03) probably_damaging(0.996) TCGA-FS-A1ZP-06 6 127517172 127517172 G AT RSPO3 3'UTR 0.22 TCGA-FS-A1ZP-06 6 129636653 129636653 C T LAMA2 Silent p.P1196P 0.37 TCGA-FS-A1ZP-06 6 13365563 13365563 G A GFOD1 Silent p.V195V 0.37 TCGA-FS-A1ZP-06 6 139695073 139695073 G A CITED2 Silent p.D3D 0.45 TCGA-FS-A1ZP-06 6 151869443 151869443 G A CCDC170 Missense_Mutation p.R198K 0.44 tolerated(0.64) benign(0.013) TCGA-FS-A1ZP-06 6 28554272 28554272 C T SCAND3 Missense_Mutation p.E75K 0.26 tolerated_low_confidence(0.17) benign(0.014) TCGA-FS-A1ZP-06 6 28876588 28876588 G A TRIM27 Nonsense_Mutation p.Q306* 0.70 TCGA-FS-A1ZP-06 6 29323323 29323323 G A OR5V1 Missense_Mutation p.S217F 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 6 29430333 29430333 C T OR2H1 Missense_Mutation p.P263S 0.15 tolerated(1) benign(0.07) TCGA-FS-A1ZP-06 6 29640402 29640402 C T ZFP57 Missense_Mutation p.E496K 0.22 tolerated(0.09) benign(0.276) TCGA-FS-A1ZP-06 6 30899172 30899172 G A SFTA2 3'UTR 0.33 TCGA-FS-A1ZP-06 6 31736937 31736937 C T VWA7 Missense_Mutation p.R454Q 0.18 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZP-06 6 31749490 31749490 G A VARS Missense_Mutation p.S799F 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZP-06 6 32181485 32181485 C T NOTCH4 Missense_Mutation p.S767N 0.20 tolerated(1) benign(0.002) TCGA-FS-A1ZP-06 6 36979567 36979567 C T FGD2 Missense_Mutation p.S155F 0.23 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZP-06 6 39040656 39040656 G A GLP1R Silent p.R176R 0.20 TCGA-FS-A1ZP-06 6 39325081 39325081 C T KIF6 Missense_Mutation p.E718K 0.27 tolerated(0.81) benign(0.013) TCGA-FS-A1ZP-06 6 40400120 40400120 G A LRFN2 Missense_Mutation p.H245Y 0.24 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZP-06 6 40400383 40400383 G A LRFN2 Missense_Mutation p.S157F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 6 41011867 41011867 G A TSPO2 Silent p.K168K 0.16 TCGA-FS-A1ZP-06 6 42211038 42211038 C T TRERF1 Missense_Mutation p.R936Q 0.14 deleterious(0) benign(0.238) TCGA-FS-A1ZP-06 6 43413002 43413002 C T ABCC10 Missense_Mutation p.L994F 0.26 deleterious(0) possibly_damaging(0.876) TCGA-FS-A1ZP-06 6 43418978 43418978 C T DLK2 Missense_Mutation p.D151N 0.08 tolerated(0.39) benign(0.001) TCGA-FS-A1ZP-06 6 45922904 45922904 G A CLIC5 Silent p.V206V 0.16 TCGA-FS-A1ZP-06 6 46682216 46682216 G A PLA2G7 Missense_Mutation p.H151Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZP-06 6 46849309 46849309 C T GPR116 Missense_Mutation p.E233K 0.16 deleterious(0.01) possibly_damaging(0.685) TCGA-FS-A1ZP-06 6 47682334 47682334 G A GPR115 Silent p.L451L 0.16 TCGA-FS-A1ZP-06 6 84108148 84108148 A T ME1 Silent p.I100I 0.35 TCGA-FS-A1ZP-06 6 87725904 87725904 C A HTR1E Silent p.T284T 0.39 TCGA-FS-A1ZP-06 6 88854670 88854670 G A CNR1 Silent p.F108F 0.30 TCGA-FS-A1ZP-06 6 89387977 89387977 G A RNGTT Intron 0.35 TCGA-FS-A1ZP-06 7 106786820 106786820 G A PRKAR2B Missense_Mutation p.G219R 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 7 116380017 116380017 G A MET Missense_Mutation p.R469Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZP-06 7 117282597 117282597 G A CFTR Missense_Mutation p.D1275N 0.36 tolerated(1) benign(0.002) TCGA-FS-A1ZP-06 7 123092935 123092935 G A IQUB Silent p.I746I 0.45 TCGA-FS-A1ZP-06 7 123593738 123593738 C T SPAM1 Silent p.F38F 0.43 TCGA-FS-A1ZP-06 7 124493162 124493162 G A POT1 Missense_Mutation p.H245Y 0.54 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZP-06 7 131908385 131908385 C T PLXNA4 Silent p.V666V 0.36 TCGA-FS-A1ZP-06 7 137339507 137339507 G A DGKI Nonsense_Mutation p.R237* 0.38 TCGA-FS-A1ZP-06 7 142120283 142120283 G A TRBV7-7 Silent p.F13F 0.35 TCGA-FS-A1ZP-06 7 142180651 142180651 C T TRBV6-5 Missense_Mutation p.G70S 0.23 tolerated(0.16) benign(0.035) TCGA-FS-A1ZP-06 7 148080748 148080748 G A CNTNAP2 Silent p.G1161G 0.31 TCGA-FS-A1ZP-06 7 150327224 150327224 C T GIMAP6 Missense_Mutation p.E3K 0.42 tolerated(0.12) unknown(0) TCGA-FS-A1ZP-06 7 150389819 150389819 G A GIMAP2 Missense_Mutation p.E149K 0.42 deleterious(0) probably_damaging(0.922) TCGA-FS-A1ZP-06 7 157931051 157931051 G A PTPRN2 Missense_Mutation p.A356V 0.44 tolerated(0.24) benign(0.006) TCGA-FS-A1ZP-06 7 31746908 31746908 C T PPP1R17 3'UTR 0.30 TCGA-FS-A1ZP-06 7 42974677 42974677 G A MRPL32 Missense_Mutation p.R85H 0.26 deleterious(0.01) possibly_damaging(0.827) TCGA-FS-A1ZP-06 7 47454806 47454806 T C TNS3 Splice_Site p.X158_splice 0.31 TCGA-FS-A1ZP-06 7 47854965 47854965 T A PKD1L1 Silent p.G2352G 0.28 TCGA-FS-A1ZP-06 7 48391796 48391796 C T ABCA13 Missense_Mutation p.S3467F 0.36 benign(0.199) TCGA-FS-A1ZP-06 7 63721296 63721296 C T ZNF679 Missense_Mutation p.T84I 0.15 deleterious(0.01) benign(0) TCGA-FS-A1ZP-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.35 deleterious(0) possibly_damaging(0.869) TCGA-FS-A1ZP-06 7 82584171 82584171 G A PCLO Missense_Mutation p.S2033F 0.38 unknown(0) TCGA-FS-A1ZP-06 7 82585696 82585696 G A PCLO Missense_Mutation p.P1525S 0.40 unknown(0) TCGA-FS-A1ZP-06 7 83634760 83634760 G A SEMA3A Missense_Mutation p.R419C 0.39 deleterious(0) probably_damaging(0.965) TCGA-FS-A1ZP-06 7 86468433 86468433 G A GRM3 Missense_Mutation p.E535K 0.51 tolerated(0.09) possibly_damaging(0.455) TCGA-FS-A1ZP-06 7 86539312 86539312 C T KIAA1324L Silent p.K725K 0.46 TCGA-FS-A1ZP-06 7 92764870 92764870 C T SAMD9L Missense_Mutation p.E139K 0.44 tolerated(0.11) benign(0.012) TCGA-FS-A1ZP-06 7 99565926 99565926 G A AZGP1 Silent p.V155V 0.33 TCGA-FS-A1ZP-06 8 10470663 10470663 C T RP1L1 Missense_Mutation p.M315I 0.34 possibly_damaging(0.47) TCGA-FS-A1ZP-06 8 110476827 110476827 A G PKHD1L1 Missense_Mutation p.N2589S 0.80 tolerated(0.1) benign(0.148) TCGA-FS-A1ZP-06 8 121238909 121238909 G A COL14A1 Silent p.T636T 0.36 TCGA-FS-A1ZP-06 8 143599604 143599604 T G BAI1 Splice_Site p.X974_splice 0.27 TCGA-FS-A1ZP-06 8 144733649 144733649 T A ZNF623 Nonsense_Mutation p.L536* 0.87 TCGA-FS-A1ZP-06 8 2037889 2037889 C T MYOM2 Missense_Mutation p.P568L 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 8 21959320 21959320 C T FAM160B2 Silent p.F603F 0.43 TCGA-FS-A1ZP-06 8 23307455 23307455 C T ENTPD4 5'UTR 0.36 TCGA-FS-A1ZP-06 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.29 TCGA-FS-A1ZP-06 8 3141781 3141781 C T CSMD1 Silent p.K1346K 0.44 TCGA-FS-A1ZP-06 8 42259489 42259489 C T VDAC3 Silent p.F170F 0.40 TCGA-FS-A1ZP-06 8 51362269 51362269 C T SNTG1 Silent p.I87I 0.68 TCGA-FS-A1ZP-06 8 54147561 54147561 G A OPRK1 Missense_Mutation p.S123F 0.22 tolerated(0.74) probably_damaging(0.977) TCGA-FS-A1ZP-06 8 59059756 59059756 G A FAM110B Missense_Mutation p.D323N 0.57 tolerated(0.45) benign(0.063) TCGA-FS-A1ZP-06 8 59852006 59852006 A G TOX Missense_Mutation p.V89A 0.09 tolerated(0.48) benign(0.01) TCGA-FS-A1ZP-06 8 77618670 77618670 C T ZFHX4 Nonsense_Mutation p.R783* 0.36 TCGA-FS-A1ZP-06 8 8185915 8185915 G A SGK223 Missense_Mutation p.P793S 0.43 benign(0.03) TCGA-FS-A1ZP-06 9 101980476 101980476 G A ALG2 Missense_Mutation p.P331S 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1ZP-06 9 107289149 107289149 G A OR13C4 Silent p.L114L 0.42 TCGA-FS-A1ZP-06 9 107332096 107332096 C T OR13C8 Silent p.I216I 0.42 TCGA-FS-A1ZP-06 9 114089898 114089898 G A OR2K2 Silent p.I272I 0.30 TCGA-FS-A1ZP-06 9 119858420 119858420 G A ASTN2 Silent p.S342S 0.41 TCGA-FS-A1ZP-06 9 120475442 120475442 C T TLR4 Missense_Mutation p.P346S 0.39 deleterious(0) probably_damaging(0.974) TCGA-FS-A1ZP-06 9 125145866 125145866 C T PTGS1 Nonsense_Mutation p.Q281* 0.41 TCGA-FS-A1ZP-06 9 125315727 125315727 C T OR1N2 Silent p.A93A 0.40 TCGA-FS-A1ZP-06 9 125330004 125330004 G A OR1L8 Silent p.L251L 0.29 TCGA-FS-A1ZP-06 9 127566427 127566427 G A OLFML2A Missense_Mutation p.G325D 0.45 tolerated(0.35) benign(0.064) TCGA-FS-A1ZP-06 9 127618183 127618183 G A WDR38 Silent p.S117S 0.36 TCGA-FS-A1ZP-06 9 128003395 128003395 G A HSPA5 Missense_Mutation p.S4F 0.43 tolerated_low_confidence(0.72) unknown(0) TCGA-FS-A1ZP-06 9 130912663 130912663 G A LCN2 Intron 0.36 TCGA-FS-A1ZP-06 9 131048329 131048329 C A SWI5 Intron 0.58 TCGA-FS-A1ZP-06 9 131048330 131048330 C T SWI5 Intron 0.52 TCGA-FS-A1ZP-06 9 131860614 131860614 G A CRAT Silent p.F414F 0.43 TCGA-FS-A1ZP-06 9 134350603 134350603 C T PRRC2B Silent p.A1029A 0.43 TCGA-FS-A1ZP-06 9 35711303 35711303 G A TLN1 Missense_Mutation p.S1323F 0.27 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZP-06 9 4286122 4286122 G A GLIS3 Nonsense_Mutation p.Q102* 0.37 TCGA-FS-A1ZP-06 9 72064641 72064641 G A APBA1 Silent p.L680L 0.54 TCGA-FS-A1ZP-06 9 80879234 80879234 T G CEP78 Splice_Site p.X543_splice 0.44 TCGA-FS-A1ZP-06 9 85615844 85615844 C T RASEF Silent p.Q468Q 0.39 TCGA-FS-A1ZP-06 9 95077832 95077832 G A NOL8 Missense_Mutation p.R359C 0.34 deleterious(0.04) benign(0.224) TCGA-FS-A1ZP-06 9 95477665 95477665 G A BICD2 Missense_Mutation p.S780L 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 9 97369103 97369103 G A FBP1 Silent p.F233F 0.33 TCGA-FS-A1ZP-06 9 99800324 99800324 A C CTSV Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZP-06 X 107420087 107420087 G A COL4A6 Silent p.A891A 0.73 TCGA-FS-A1ZP-06 X 118215449 118215449 T A KIAA1210 Missense_Mutation p.K1658M 0.85 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZP-06 X 135439873 135439873 G A GPR112 Missense_Mutation p.R2313K 0.78 tolerated(0.32) benign(0.012) TCGA-FS-A1ZP-06 X 13624543 13624543 G A EGFL6 Missense_Mutation p.R189Q 0.79 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZP-06 X 142718157 142718157 G T SLITRK4 Silent p.T256T 0.14 TCGA-FS-A1ZP-06 X 142795152 142795152 C T SPANXN2 Missense_Mutation p.E176K 0.77 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZP-06 X 152482817 152482817 G A MAGEA1 Missense_Mutation p.P65L 0.92 tolerated(0.19) benign(0.029) TCGA-FS-A1ZP-06 X 155004432 155004432 C T SPRY3 3'UTR 0.44 TCGA-FS-A1ZP-06 X 37893255 37893255 G A SYTL5 Missense_Mutation p.R38K 0.78 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZP-06 X 73071002 73071002 C T XIST RNA 0.83 TCGA-FS-A1ZP-06 X 73072346 73072346 C T XIST RNA 0.87 TCGA-FS-A1ZP-06 X 74273118 74273118 G A ABCB7 3'UTR 0.77 TCGA-FS-A1ZP-06 X 76814187 76814187 G A ATRX Missense_Mutation p.R2153C 0.80 probably_damaging(1) TCGA-FS-A1ZQ-06 10 115400007 115400007 C T NRAP Missense_Mutation p.M469I 0.66 tolerated(0.12) benign(0.027) TCGA-FS-A1ZQ-06 10 118029037 118029037 G A GFRA1 Silent p.F132F 0.58 TCGA-FS-A1ZQ-06 10 12238120 12238120 T C NUDT5 5'UTR 0.59 TCGA-FS-A1ZQ-06 10 16794967 16794967 C T RSU1 Missense_Mutation p.D145N 0.62 deleterious(0.04) probably_damaging(1) TCGA-FS-A1ZQ-06 10 32856725 32856725 C T CCDC7 Missense_Mutation p.S442L 0.60 tolerated(0.1) benign(0.024) TCGA-FS-A1ZQ-06 10 43606833 43606833 T G RET Missense_Mutation p.L481R 0.16 deleterious(0) possibly_damaging(0.642) TCGA-FS-A1ZQ-06 10 48371431 48371431 A T ZNF488 Missense_Mutation p.K300M 0.66 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZQ-06 10 50594844 50594844 C T DRGX Missense_Mutation p.E104K 0.55 tolerated(0.17) benign(0.017) TCGA-FS-A1ZQ-06 10 68940176 68940176 C T CTNNA3 Missense_Mutation p.D316N 0.61 deleterious(0.01) possibly_damaging(0.822) TCGA-FS-A1ZQ-06 11 100141954 100141954 G A CNTN5 Missense_Mutation p.M765I 0.48 tolerated(0.11) benign(0.003) TCGA-FS-A1ZQ-06 11 104877831 104877831 G A CASP5 Nonsense_Mutation p.Q151* 0.57 TCGA-FS-A1ZQ-06 11 110134695 110134695 G A RDX Silent p.L153L 0.55 TCGA-FS-A1ZQ-06 11 110134696 110134696 G A RDX Silent p.L152L 0.55 TCGA-FS-A1ZQ-06 11 114401507 114401507 C T NXPE1 5'UTR 0.52 TCGA-FS-A1ZQ-06 11 1162342 1162342 C T MUC5AC Silent p.C617C 0.21 TCGA-FS-A1ZQ-06 11 118255590 118255590 C T UBE4A Missense_Mutation p.P788L 0.61 deleterious(0.02) probably_damaging(0.977) TCGA-FS-A1ZQ-06 11 122647762 122647762 G A UBASH3B Silent p.L82L 0.59 TCGA-FS-A1ZQ-06 11 123810407 123810407 C T OR4D5 Silent p.F28F 0.70 TCGA-FS-A1ZQ-06 11 123894512 123894512 G A OR10G9 Missense_Mutation p.D265N 0.62 tolerated(0.43) benign(0.007) TCGA-FS-A1ZQ-06 11 128634683 128634683 G A FLI1 Intron 0.53 TCGA-FS-A1ZQ-06 11 128838851 128838851 G A ARHGAP32 Missense_Mutation p.P2072L 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 11 18195625 18195625 C T MRGPRX4 Silent p.F274F 0.36 TCGA-FS-A1ZQ-06 11 18460142 18460142 G A LDHC Silent p.T220T 0.28 TCGA-FS-A1ZQ-06 11 1874417 1874417 G A LSP1 Missense_Mutation p.E15K 0.42 tolerated(0.07) benign(0.019) TCGA-FS-A1ZQ-06 11 22382522 22382522 C T SLC17A6 Missense_Mutation p.S218F 0.50 deleterious(0) benign(0.078) TCGA-FS-A1ZQ-06 11 24936070 24936070 G A LUZP2 Missense_Mutation p.D170N 0.23 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZQ-06 11 3661430 3661430 C T ART5 Missense_Mutation p.D77N 0.49 tolerated(0.42) benign(0.001) TCGA-FS-A1ZQ-06 11 43469611 43469611 C T TTC17 Missense_Mutation p.R909C 0.40 deleterious(0) probably_damaging(0.939) TCGA-FS-A1ZQ-06 11 48510399 48510399 C T OR4A47 Missense_Mutation p.P19S 0.31 deleterious_low_confidence(0.05) benign(0.039) TCGA-FS-A1ZQ-06 11 4936071 4936071 G A OR51G2 Missense_Mutation p.H275Y 0.38 deleterious(0.04) possibly_damaging(0.799) TCGA-FS-A1ZQ-06 11 4936151 4936151 G A OR51G2 Missense_Mutation p.S248F 0.38 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZQ-06 11 5248199 5248199 T G HBB Missense_Mutation p.K18T 0.15 deleterious(0.01) probably_damaging(0.959) TCGA-FS-A1ZQ-06 11 5364484 5364484 C T OR51B5 Missense_Mutation p.G91R 0.46 tolerated(0.06) benign(0.003) TCGA-FS-A1ZQ-06 11 5529171 5529171 G A UBQLN3 Missense_Mutation p.R540C 0.31 tolerated(0.1) benign(0.009) TCGA-FS-A1ZQ-06 11 55579818 55579818 G A OR5L1 Silent p.L292L 0.49 TCGA-FS-A1ZQ-06 11 55761613 55761613 G A OR5F1 Silent p.V163V 0.41 TCGA-FS-A1ZQ-06 11 5719671 5719671 C T TRIM22 Silent p.L216L 0.35 TCGA-FS-A1ZQ-06 11 61504776 61504776 C T DAGLA Silent p.S498S 0.38 TCGA-FS-A1ZQ-06 11 61511889 61511889 C T DAGLA Silent p.I1019I 0.44 TCGA-FS-A1ZQ-06 11 64525338 64525338 C T PYGM Silent p.E191E 0.26 TCGA-FS-A1ZQ-06 11 67925386 67925386 C T SUV420H1 Silent p.L809L 0.36 TCGA-FS-A1ZQ-06 11 6816325 6816325 G A OR6A2 Silent p.F205F 0.32 TCGA-FS-A1ZQ-06 11 6898405 6898405 A G OR10A4 Missense_Mutation p.N176S 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-FS-A1ZQ-06 11 71146507 71146507 C T DHCR7 Missense_Mutation p.E448K 0.50 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 11 72422542 72422542 G A ARAP1 Missense_Mutation p.S342F 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1ZQ-06 11 74085522 74085522 G A PGM2L1 Missense_Mutation p.R73C 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZQ-06 11 7530732 7530732 G A OLFML1 Silent p.K174K 0.31 TCGA-FS-A1ZQ-06 11 7530733 7530733 G A OLFML1 Missense_Mutation p.V175M 0.31 deleterious(0) probably_damaging(0.933) TCGA-FS-A1ZQ-06 11 77728170 77728170 G A KCTD14 Silent p.I79I 0.18 TCGA-FS-A1ZQ-06 11 77885399 77885399 G A KCTD21 Missense_Mutation p.L68F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 11 78423616 78423616 G A TENM4 Missense_Mutation p.A1322V 0.41 tolerated(0.11) benign(0.122) TCGA-FS-A1ZQ-06 11 7984936 7984936 G A NLRP10 Missense_Mutation p.T36I 0.36 tolerated(0.05) possibly_damaging(0.816) TCGA-FS-A1ZQ-06 11 8942945 8942945 G A C11orf16 Missense_Mutation p.P441L 0.40 tolerated(1) benign(0.008) TCGA-FS-A1ZQ-06 11 89868809 89868809 G A NAALAD2 Missense_Mutation p.M55I 0.40 tolerated(0.29) benign(0.422) TCGA-FS-A1ZQ-06 12 102590677 102590677 C T PARPBP 3'Flank 0.71 TCGA-FS-A1ZQ-06 12 104109615 104109615 C T STAB2 Silent p.N1520N 0.58 TCGA-FS-A1ZQ-06 12 108686458 108686458 G A CMKLR1 Silent p.I94I 0.61 TCGA-FS-A1ZQ-06 12 108985890 108985890 G A TMEM119 Silent p.F90F 0.50 TCGA-FS-A1ZQ-06 12 112219760 112219760 G A ALDH2 Silent p.R51R 0.71 TCGA-FS-A1ZQ-06 12 11506324 11506324 C T PRB1 Missense_Mutation p.G105E 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-FS-A1ZQ-06 12 119961610 119961610 G A CCDC60 Missense_Mutation p.E406K 0.74 deleterious(0.01) possibly_damaging(0.801) TCGA-FS-A1ZQ-06 12 12022505 12022505 C T ETV6 Missense_Mutation p.P204L 0.36 deleterious(0) probably_damaging(0.909) TCGA-FS-A1ZQ-06 12 120578761 120578761 G A GCN1L1 Missense_Mutation p.P1966S 0.78 probably_damaging(0.999) TCGA-FS-A1ZQ-06 12 121176354 121176354 C T ACADS Missense_Mutation p.R272C 0.73 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 12 123089491 123089491 C G KNTC1 Missense_Mutation p.T1748R 0.73 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 12 123334490 123334490 C T HIP1R Silent p.S142S 0.68 TCGA-FS-A1ZQ-06 12 124268667 124268667 C T DNAH10 Silent p.F330F 0.74 TCGA-FS-A1ZQ-06 12 13240852 13240852 G A GSG1 Missense_Mutation p.S185F 0.29 deleterious(0) possibly_damaging(0.891) TCGA-FS-A1ZQ-06 12 13529288 13529288 G A C12orf36 Missense_Mutation p.P18S 0.33 benign(0.003) TCGA-FS-A1ZQ-06 12 15035095 15035095 C T MGP Missense_Mutation p.R122K 0.44 tolerated_low_confidence(0.84) possibly_damaging(0.671) TCGA-FS-A1ZQ-06 12 20896269 20896269 C T SLCO1C1 Silent p.A588A 0.33 TCGA-FS-A1ZQ-06 12 25311484 25311484 C T CASC1 Silent p.L40L 0.38 TCGA-FS-A1ZQ-06 12 32145533 32145533 C T KIAA1551 3'UTR 0.42 TCGA-FS-A1ZQ-06 12 32996156 32996156 C T PKP2 Silent p.R490R 0.38 TCGA-FS-A1ZQ-06 12 33559882 33559882 C T SYT10 Missense_Mutation p.D307N 0.35 tolerated(1) possibly_damaging(0.673) TCGA-FS-A1ZQ-06 12 39980071 39980071 C T ABCD2 Missense_Mutation p.D559N 0.65 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 12 47629854 47629854 T A PCED1B Silent p.G336G 0.08 TCGA-FS-A1ZQ-06 12 47629855 47629855 C T PCED1B Missense_Mutation p.P337S 0.09 tolerated(0.09) benign(0.049) TCGA-FS-A1ZQ-06 12 52946563 52946563 C T KRT71 Missense_Mutation p.G100E 0.59 deleterious(0) probably_damaging(0.931) TCGA-FS-A1ZQ-06 12 54757305 54757305 G A GPR84 Missense_Mutation p.L111F 0.61 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 12 55715045 55715045 G A OR6C1 Missense_Mutation p.R221K 0.66 tolerated_low_confidence(0.46) benign(0.03) TCGA-FS-A1ZQ-06 12 5603428 5603428 C T NTF3 Silent p.I29I 0.25 TCGA-FS-A1ZQ-06 12 57663166 57663167 GA - R3HDM2 Frame_Shift_Del p.H538Pfs*5 0.45 TCGA-FS-A1ZQ-06 12 6030386 6030386 G A ANO2 Silent p.F114F 0.27 TCGA-FS-A1ZQ-06 12 70049039 70049039 G A BEST3 Missense_Mutation p.P552L 0.24 tolerated_low_confidence(0.07) benign(0.003) TCGA-FS-A1ZQ-06 12 70087528 70087528 G A BEST3 Missense_Mutation p.S136F 0.61 deleterious(0.03) possibly_damaging(0.463) TCGA-FS-A1ZQ-06 12 70990070 70990070 C T PTPRB Silent p.E339E 0.66 TCGA-FS-A1ZQ-06 12 78400287 78400287 C T NAV3 Silent p.I323I 0.61 TCGA-FS-A1ZQ-06 12 7848348 7848348 C T GDF3 5'UTR 0.17 TCGA-FS-A1ZQ-06 12 78593243 78593243 G A NAV3 Nonsense_Mutation p.W2194* 0.65 TCGA-FS-A1ZQ-06 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.22 tolerated(0.06) possibly_damaging(0.542) TCGA-FS-A1ZQ-06 12 80707373 80707373 G A OTOGL Missense_Mutation p.E1181K 0.49 tolerated(0.13) possibly_damaging(0.498) TCGA-FS-A1ZQ-06 12 971408 971408 C T WNK1 Missense_Mutation p.P704L 0.40 deleterious(0.03) unknown(0) TCGA-FS-A1ZQ-06 13 108882144 108882144 C T ABHD13 Missense_Mutation p.S193F 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 13 19748170 19748170 C T TUBA3C Missense_Mutation p.D396N 0.28 deleterious_low_confidence(0.01) benign(0.014) TCGA-FS-A1ZQ-06 13 23909874 23909874 G A SACS Missense_Mutation p.S2714L 0.31 probably_damaging(0.992) TCGA-FS-A1ZQ-06 13 28240122 28240122 C T POLR1D 3'UTR 0.53 TCGA-FS-A1ZQ-06 13 29041706 29041706 C T FLT1 Missense_Mutation p.G38D 0.38 tolerated(0.35) probably_damaging(0.941) TCGA-FS-A1ZQ-06 13 29600708 29600708 G A MTUS2 Missense_Mutation p.E635K 0.41 deleterious(0) possibly_damaging(0.783) TCGA-FS-A1ZQ-06 13 35733303 35733303 G A NBEA Missense_Mutation p.E999K 0.37 deleterious_low_confidence(0.05) benign(0.021) TCGA-FS-A1ZQ-06 13 42875847 42875847 C T AKAP11 Missense_Mutation p.P989S 0.32 tolerated(0.17) benign(0.002) TCGA-FS-A1ZQ-06 13 52364186 52364186 C T DHRS12 Missense_Mutation p.E137K 0.33 tolerated(0.21) possibly_damaging(0.525) TCGA-FS-A1ZQ-06 13 61987393 61987393 C T PCDH20 Missense_Mutation p.R280K 0.44 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZQ-06 14 100758856 100758856 G A SLC25A29 Missense_Mutation p.P226S 0.45 tolerated(0.44) benign(0.216) TCGA-FS-A1ZQ-06 14 105410577 105410577 C A AHNAK2 Missense_Mutation p.K3737N 0.60 probably_damaging(0.978) TCGA-FS-A1ZQ-06 14 106586352 106586352 C T IGHV3-13 Missense_Mutation p.G45R 0.09 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-FS-A1ZQ-06 14 106692110 106692110 G A IGHV3-21 Silent p.L5L 0.52 TCGA-FS-A1ZQ-06 14 19553461 19553461 G A POTEG Silent p.K15K 0.19 TCGA-FS-A1ZQ-06 14 19563436 19563436 C T POTEG Missense_Mutation p.S317L 0.15 deleterious(0.04) probably_damaging(0.988) TCGA-FS-A1ZQ-06 14 20020176 20020176 C T POTEM Silent p.K15K 0.33 TCGA-FS-A1ZQ-06 14 20248579 20248579 C T OR4M1 Missense_Mutation p.S33F 0.07 tolerated(0.52) benign(0.001) TCGA-FS-A1ZQ-06 14 20296196 20296196 C T OR4N2 Missense_Mutation p.L197F 0.30 tolerated(0.23) benign(0.17) TCGA-FS-A1ZQ-06 14 20296197 20296197 T A OR4N2 Missense_Mutation p.L197H 0.31 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZQ-06 14 20404050 20404050 C T OR4K1 Silent p.N75N 0.10 TCGA-FS-A1ZQ-06 14 31424860 31424860 G A STRN3 Silent p.N142N 0.54 TCGA-FS-A1ZQ-06 14 38724353 38724353 C T CLEC14A Missense_Mutation p.G292E 0.50 tolerated(0.09) benign(0.139) TCGA-FS-A1ZQ-06 14 39818088 39818088 T C CTAGE5 Missense_Mutation p.F724L 0.08 tolerated(0.09) benign(0.045) TCGA-FS-A1ZQ-06 14 58796780 58796780 G A ARID4A Missense_Mutation p.D267N 0.60 deleterious(0.04) benign(0.401) TCGA-FS-A1ZQ-06 14 68248162 68248162 G A ZFYVE26 Missense_Mutation p.P1486L 0.49 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZQ-06 14 75143345 75143345 G A AREL1 Missense_Mutation p.P198S 0.09 tolerated(0.41) benign(0.343) TCGA-FS-A1ZQ-06 14 81736942 81736942 G A STON2 Intron 0.39 TCGA-FS-A1ZQ-06 14 95111306 95111306 C T SERPINA13P RNA 0.10 TCGA-FS-A1ZQ-06 15 25227115 25227115 A C SNRPN 3'Flank 0.10 TCGA-FS-A1ZQ-06 15 28408299 28408299 C T HERC2 Missense_Mutation p.D3563N 0.27 benign(0.018) TCGA-FS-A1ZQ-06 15 28408300 28408300 C T HERC2 Silent p.G3562G 0.27 TCGA-FS-A1ZQ-06 15 40259840 40259840 C T EIF2AK4 Missense_Mutation p.T438I 0.47 tolerated(0.52) benign(0.016) TCGA-FS-A1ZQ-06 15 40259841 40259841 C T EIF2AK4 Silent p.T438T 0.47 TCGA-FS-A1ZQ-06 15 43446960 43446960 C T TMEM62 Silent p.P371P 0.34 TCGA-FS-A1ZQ-06 15 43900142 43900142 C T STRC Missense_Mutation p.R1238K 0.32 tolerated(0.2) benign(0.004) TCGA-FS-A1ZQ-06 15 45398334 45398334 C T DUOX2 Missense_Mutation p.E713K 0.35 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZQ-06 15 50570924 50570924 G A GABPB1 Nonsense_Mutation p.R365* 0.33 TCGA-FS-A1ZQ-06 15 50741605 50741605 C T USP8 Silent p.F86F 0.40 TCGA-FS-A1ZQ-06 15 50830987 50830987 G A USP50 Missense_Mutation p.S241F 0.52 deleterious(0.02) benign(0.182) TCGA-FS-A1ZQ-06 15 50925153 50925153 G A TRPM7 Silent p.S348S 0.31 TCGA-FS-A1ZQ-06 15 52011735 52011735 G A SCG3 3'UTR 0.44 TCGA-FS-A1ZQ-06 15 52497127 52497127 C T MYO5C Silent p.A1585A 0.29 TCGA-FS-A1ZQ-06 15 53991959 53991959 C T WDR72 Missense_Mutation p.E585K 0.31 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZQ-06 15 63955388 63955388 G A HERC1 Missense_Mutation p.S2899F 0.34 possibly_damaging(0.723) TCGA-FS-A1ZQ-06 15 63970335 63970335 G A HERC1 Missense_Mutation p.S2260L 0.47 benign(0.067) TCGA-FS-A1ZQ-06 15 65687481 65687481 C T IGDCC4 Silent p.L509L 0.24 TCGA-FS-A1ZQ-06 15 65916838 65916838 G A SLC24A1 Silent p.R140R 0.29 TCGA-FS-A1ZQ-06 15 75902304 75902304 G A SNUPN Missense_Mutation p.P112L 0.40 deleterious(0) possibly_damaging(0.887) TCGA-FS-A1ZQ-06 15 76225279 76225279 C T FBXO22 Missense_Mutation p.P350S 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-FS-A1ZQ-06 15 76235925 76235925 C T NRG4 3'UTR 0.39 TCGA-FS-A1ZQ-06 15 79059832 79059832 C T ADAMTS7 Silent p.Q916Q 0.35 TCGA-FS-A1ZQ-06 15 81224217 81224217 G A KIAA1199 Missense_Mutation p.G877E 0.35 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZQ-06 15 83791524 83791524 G A TM6SF1 Missense_Mutation p.R166Q 0.37 tolerated(0.16) benign(0.116) TCGA-FS-A1ZQ-06 15 88524568 88524568 G A NTRK3 Intron 0.37 TCGA-FS-A1ZQ-06 15 89400408 89400408 G A ACAN Missense_Mutation p.G1531E 0.33 deleterious(0.02) benign(0.443) TCGA-FS-A1ZQ-06 15 90348422 90348422 G A ANPEP Missense_Mutation p.P262S 0.31 tolerated(0.55) benign(0.009) TCGA-FS-A1ZQ-06 16 1270746 1270746 G A CACNA1H Missense_Mutation p.D2272N 0.58 deleterious_low_confidence(0.03) benign(0.006) TCGA-FS-A1ZQ-06 16 1507738 1507738 G A CLCN7 Missense_Mutation p.S232F 0.25 tolerated(0.22) benign(0.001) TCGA-FS-A1ZQ-06 16 16215849 16215849 C T ABCC1 Silent p.S1136S 0.34 TCGA-FS-A1ZQ-06 16 19726325 19726325 C T KNOP1 Silent p.G11G 0.38 TCGA-FS-A1ZQ-06 16 2012137 2012137 C T RPS2 Missense_Mutation p.V282M 0.38 tolerated(0.24) benign(0.388) TCGA-FS-A1ZQ-06 16 20554476 20554476 C T ACSM2B Missense_Mutation p.D464N 0.24 deleterious(0) probably_damaging(0.944) TCGA-FS-A1ZQ-06 16 24192196 24192196 G A PRKCB Missense_Mutation p.D494N 0.42 tolerated(0.43) benign(0.007) TCGA-FS-A1ZQ-06 16 27503770 27503770 G A GTF3C1 Silent p.L1014L 0.24 TCGA-FS-A1ZQ-06 16 27784432 27784432 T C KIAA0556 Missense_Mutation p.F1404S 0.53 deleterious(0) probably_damaging(0.956) TCGA-FS-A1ZQ-06 16 28619805 28619805 G A SULT1A1 Missense_Mutation p.P90S 0.29 tolerated(0.18) benign(0.016) TCGA-FS-A1ZQ-06 16 28935917 28935917 G A RABEP2 Silent p.S27S 0.21 TCGA-FS-A1ZQ-06 16 304619 304619 C T ITFG3 Silent p.V69V 0.37 TCGA-FS-A1ZQ-06 16 31435519 31435519 G A ITGAD Missense_Mutation p.A1086T 0.43 tolerated(0.24) benign(0.008) TCGA-FS-A1ZQ-06 16 33647421 33647421 G A RP11-812E19.9 Missense_Mutation p.P60L 0.33 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-FS-A1ZQ-06 16 4242577 4242577 G A SRL Silent p.I333I 0.34 TCGA-FS-A1ZQ-06 16 4949107 4949107 C T PPL Silent p.R261R 0.35 TCGA-FS-A1ZQ-06 16 51174411 51174411 C T SALL1 Silent p.E574E 0.36 TCGA-FS-A1ZQ-06 16 58314233 58314233 C T PRSS54 Silent p.G361G 0.27 TCGA-FS-A1ZQ-06 16 67261022 67261022 C T TMEM208 5'UTR 0.39 TCGA-FS-A1ZQ-06 16 67854848 67854848 G A TSNAXIP1 Missense_Mutation p.R31Q 0.33 tolerated(0.11) benign(0.006) TCGA-FS-A1ZQ-06 16 70694141 70694141 G A IL34 3'UTR 0.42 TCGA-FS-A1ZQ-06 16 70841964 70841964 G A HYDIN Missense_Mutation p.T4962I 0.27 probably_damaging(0.934) TCGA-FS-A1ZQ-06 16 70954536 70954536 C T HYDIN Nonsense_Mutation p.W2581* 0.47 TCGA-FS-A1ZQ-06 16 71196479 71196479 C T HYDIN Missense_Mutation p.R224Q 0.29 possibly_damaging(0.908) TCGA-FS-A1ZQ-06 16 731968 731968 G A JMJD8 3'UTR 0.31 TCGA-FS-A1ZQ-06 16 731969 731969 G A JMJD8 3'UTR 0.30 TCGA-FS-A1ZQ-06 16 75688173 75688173 C T TERF2IP Missense_Mutation p.P225S 0.32 tolerated(0.11) possibly_damaging(0.472) TCGA-FS-A1ZQ-06 16 76574680 76574680 G A CNTNAP4 Silent p.R1072R 0.44 TCGA-FS-A1ZQ-06 16 780930 780930 C T NARFL Missense_Mutation p.G369S 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 17 10362699 10362699 C T MYH4 Missense_Mutation p.E486K 0.57 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A1ZQ-06 17 11515206 11515206 C T DNAH9 Intron 0.56 TCGA-FS-A1ZQ-06 17 14205243 14205243 G A HS3ST3B1 Silent p.Q136Q 0.40 TCGA-FS-A1ZQ-06 17 28538366 28538366 G A SLC6A4 Silent p.F427F 0.59 TCGA-FS-A1ZQ-06 17 29272027 29272027 G A ADAP2 Missense_Mutation p.D205N 0.59 deleterious(0.01) benign(0.008) TCGA-FS-A1ZQ-06 17 30348852 30348852 G A LRRC37B Missense_Mutation p.M229I 0.64 tolerated(0.13) possibly_damaging(0.621) TCGA-FS-A1ZQ-06 17 3301220 3301220 A C OR1E1 Missense_Mutation p.L162R 0.21 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 17 33738894 33738894 G A SLFN12 Silent p.F400F 0.61 TCGA-FS-A1ZQ-06 17 36047354 36047354 G A HNF1B 3'UTR 0.56 TCGA-FS-A1ZQ-06 17 38854792 38854792 C T KRT24 Missense_Mutation p.R491Q 0.55 tolerated(0.08) benign(0.04) TCGA-FS-A1ZQ-06 17 39471884 39471884 C T KRTAP17-1 Missense_Mutation p.D7N 0.70 unknown(0) TCGA-FS-A1ZQ-06 17 3947590 3947590 A T ZZEF1 Missense_Mutation p.S2032T 0.57 tolerated(0.59) benign(0) TCGA-FS-A1ZQ-06 17 42338145 42338145 C T SLC4A1 Silent p.K69K 0.63 TCGA-FS-A1ZQ-06 17 46670776 46670776 G A HOXB5 Missense_Mutation p.S90L 0.85 tolerated(0.07) benign(0.121) TCGA-FS-A1ZQ-06 17 47785270 47785270 C T SLC35B1 5'UTR 0.75 TCGA-FS-A1ZQ-06 17 48212944 48212944 C T PPP1R9B Missense_Mutation p.E790K 0.77 tolerated(0.56) benign(0.053) TCGA-FS-A1ZQ-06 17 56435718 56435718 G A RNF43 Silent p.G473G 0.72 TCGA-FS-A1ZQ-06 17 7230508 7230508 G A NEURL4 Missense_Mutation p.P257S 0.56 tolerated(0.37) benign(0.001) TCGA-FS-A1ZQ-06 17 73567847 73567847 C T LLGL2 Missense_Mutation p.P759L 0.39 tolerated(0.21) benign(0.004) TCGA-FS-A1ZQ-06 17 74003217 74003217 G A EVPL Silent p.S2023S 0.28 TCGA-FS-A1ZQ-06 17 74004741 74004741 C T EVPL Silent p.Q1515Q 0.50 TCGA-FS-A1ZQ-06 17 74006472 74006472 C T EVPL Silent p.Q938Q 0.56 TCGA-FS-A1ZQ-06 17 78055753 78055753 G A CCDC40 Missense_Mutation p.D629N 0.33 deleterious(0) possibly_damaging(0.811) TCGA-FS-A1ZQ-06 17 80972384 80972384 C T B3GNTL1 Missense_Mutation p.M118I 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-FS-A1ZQ-06 17 8790475 8790475 C T PIK3R5 Missense_Mutation p.D615N 0.58 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 18 14537894 14537894 C T POTEC Missense_Mutation p.G239E 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZQ-06 18 29041205 29041205 G A DSG3 Missense_Mutation p.E277K 0.30 tolerated(0.15) benign(0.032) TCGA-FS-A1ZQ-06 18 29046629 29046629 G A DSG3 Silent p.L516L 0.33 TCGA-FS-A1ZQ-06 18 43435618 43435618 G A EPG5 Missense_Mutation p.L2493F 0.56 deleterious(0) benign(0.261) TCGA-FS-A1ZQ-06 18 50683833 50683833 G A DCC Missense_Mutation p.G457R 0.38 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 18 51855774 51855774 G A STARD6 Missense_Mutation p.S141L 0.28 deleterious(0.02) probably_damaging(0.94) TCGA-FS-A1ZQ-06 18 56184326 56184326 G A ALPK2 Silent p.I1918I 0.52 TCGA-FS-A1ZQ-06 18 61304933 61304933 G A SERPINB4 3'UTR 0.36 TCGA-FS-A1ZQ-06 18 61564961 61564961 G A SERPINB2 Missense_Mutation p.E140K 0.36 tolerated(0.74) possibly_damaging(0.467) TCGA-FS-A1ZQ-06 18 8825578 8825578 C T SOGA2 Missense_Mutation p.P1357L 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 18 9887635 9887635 G A TXNDC2 Missense_Mutation p.G387S 0.37 tolerated(0.19) possibly_damaging(0.657) TCGA-FS-A1ZQ-06 19 10738467 10738467 C T SLC44A2 Silent p.I52I 0.63 TCGA-FS-A1ZQ-06 19 16860679 16860679 C T NWD1 Missense_Mutation p.A409V 0.57 tolerated(0.25) benign(0.005) TCGA-FS-A1ZQ-06 19 18870915 18870915 C T CRTC1 Missense_Mutation p.P271S 0.84 tolerated(0.09) probably_damaging(0.999) TCGA-FS-A1ZQ-06 19 22171613 22171613 T C ZNF208 Silent p.L34L 0.51 TCGA-FS-A1ZQ-06 19 2220136 2220136 C T DOT1L Silent p.P907P 0.55 TCGA-FS-A1ZQ-06 19 22363024 22363024 G A ZNF676 Missense_Mutation p.H499Y 0.52 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZQ-06 19 36205768 36205768 G A ZBTB32 Silent p.G80G 0.27 TCGA-FS-A1ZQ-06 19 36223280 36223280 C T KMT2B Missense_Mutation p.P1944S 0.44 benign(0.018) TCGA-FS-A1ZQ-06 19 36303435 36303435 G A PRODH2 Silent p.L142L 0.56 TCGA-FS-A1ZQ-06 19 36330412 36330412 C T NPHS1 Silent p.Q971Q 0.50 TCGA-FS-A1ZQ-06 19 39293023 39293023 G A LGALS4 Silent p.L198L 0.63 TCGA-FS-A1ZQ-06 19 40397968 40397968 A T FCGBP Nonsense_Mutation p.C2333* 0.28 TCGA-FS-A1ZQ-06 19 40433743 40433743 C T FCGBP Missense_Mutation p.G176R 0.31 possibly_damaging(0.779) TCGA-FS-A1ZQ-06 19 41628759 41628759 G A CYP2F1 Missense_Mutation p.M285I 0.28 tolerated(0.37) benign(0.014) TCGA-FS-A1ZQ-06 19 43258585 43258585 G A PSG8 Silent p.I381I 0.32 TCGA-FS-A1ZQ-06 19 43382238 43382238 C T PSG1 Missense_Mutation p.G86D 0.33 tolerated(0.09) benign(0.003) TCGA-FS-A1ZQ-06 19 43579720 43579720 C T PSG2 Silent p.V165V 0.37 TCGA-FS-A1ZQ-06 19 44047642 44047642 G A XRCC1 Missense_Mutation p.P602S 0.34 tolerated(0.57) possibly_damaging(0.55) TCGA-FS-A1ZQ-06 19 44514759 44514759 C T ZNF230 Missense_Mutation p.H190Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 19 4516655 4516655 C T PLIN4 Missense_Mutation p.E63K 0.75 tolerated(0.08) benign(0.37) TCGA-FS-A1ZQ-06 19 4529389 4529389 C T PLIN5 Intron 0.75 TCGA-FS-A1ZQ-06 19 45323972 45323972 G A BCAM Missense_Mutation p.E592K 0.42 deleterious(0.01) possibly_damaging(0.722) TCGA-FS-A1ZQ-06 19 4538062 4538062 G A LRG1 Missense_Mutation p.R312C 0.69 tolerated(0.06) benign(0.004) TCGA-FS-A1ZQ-06 19 45895246 45895246 G A PPP1R13L Silent p.I569I 0.44 TCGA-FS-A1ZQ-06 19 47178312 47178312 G A PRKD2 Missense_Mutation p.S801F 0.33 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZQ-06 19 47856776 47856776 C T DHX34 Silent p.P163P 0.37 TCGA-FS-A1ZQ-06 19 47858352 47858352 C T DHX34 Silent p.F254F 0.41 TCGA-FS-A1ZQ-06 19 49416361 49416361 G A NUCB1 Missense_Mutation p.E192K 0.34 tolerated(1) benign(0.002) TCGA-FS-A1ZQ-06 19 49999671 49999671 C T RPS11 5'UTR 0.38 TCGA-FS-A1ZQ-06 19 50139924 50139924 G A RRAS Silent p.F135F 0.25 TCGA-FS-A1ZQ-06 19 50462696 50462696 G T SIGLEC11 Silent p.A326A 0.37 TCGA-FS-A1ZQ-06 19 50475286 50475286 G A VRK3 3'Flank 0.34 TCGA-FS-A1ZQ-06 19 51875654 51875654 C T NKG7 Missense_Mutation p.G46R 0.32 tolerated(0.19) possibly_damaging(0.709) TCGA-FS-A1ZQ-06 19 54215545 54215545 G A MIR517A RNA 0.30 TCGA-FS-A1ZQ-06 19 54418697 54418697 G A CACNG7 Missense_Mutation p.G121D 0.47 deleterious(0.05) probably_damaging(0.99) TCGA-FS-A1ZQ-06 19 54515287 54515287 G A CACNG6 Silent p.P209P 0.43 TCGA-FS-A1ZQ-06 19 54800008 54800008 G T LILRA3 3'UTR 0.46 TCGA-FS-A1ZQ-06 19 55107226 55107226 G A LILRA1 Missense_Mutation p.E262K 0.36 tolerated(0.13) benign(0.099) TCGA-FS-A1ZQ-06 19 55107841 55107841 C T LILRA1 Silent p.F382F 0.32 TCGA-FS-A1ZQ-06 19 55179408 55179408 C A LILRB4 Missense_Mutation p.P429T 0.35 tolerated(0.07) possibly_damaging(0.878) TCGA-FS-A1ZQ-06 19 56499263 56499263 C T NLRP8 Missense_Mutation p.S1044F 0.33 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FS-A1ZQ-06 19 57133224 57133224 A T ZNF71 Missense_Mutation p.D190V 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZQ-06 19 57328178 57328178 G A PEG3 Silent p.F544F 0.36 TCGA-FS-A1ZQ-06 19 8841502 8841502 G A OR2Z1 Missense_Mutation p.G38S 0.65 tolerated(0.31) probably_damaging(0.929) TCGA-FS-A1ZQ-06 19 9061109 9061109 C T MUC16 Silent p.T8779T 0.65 TCGA-FS-A1ZQ-06 19 9069754 9069754 G A MUC16 Missense_Mutation p.P5898S 0.61 unknown(0) TCGA-FS-A1ZQ-06 19 9076887 9076887 G A MUC16 Missense_Mutation p.S3520L 0.51 unknown(0) TCGA-FS-A1ZQ-06 19 9091259 9091259 G A MUC16 Missense_Mutation p.P186S 0.58 unknown(0) TCGA-FS-A1ZQ-06 19 9579859 9579859 C T ZNF560 Nonsense_Mutation p.W178* 0.56 TCGA-FS-A1ZQ-06 1 10042824 10042824 A C NMNAT1 3'UTR 0.27 TCGA-FS-A1ZQ-06 1 109859567 109859567 G A SORT1 Missense_Mutation p.P719S 0.36 deleterious(0) possibly_damaging(0.893) TCGA-FS-A1ZQ-06 1 111825284 111825284 G A CHIAP2 RNA 0.46 TCGA-FS-A1ZQ-06 1 114450741 114450741 C T DCLRE1B Missense_Mutation p.P156S 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.36 tolerated(0.06) benign(0.006) TCGA-FS-A1ZQ-06 1 119936430 119936430 C T HAO2 Silent p.I341I 0.35 TCGA-FS-A1ZQ-06 1 120438014 120438014 C T ADAM30 Missense_Mutation p.E316K 0.36 tolerated(0.93) benign(0.004) TCGA-FS-A1ZQ-06 1 120506229 120506229 C T NOTCH2 Missense_Mutation p.G628D 0.33 tolerated(0.12) benign(0.369) TCGA-FS-A1ZQ-06 1 12628406 12628406 G A DHRS3 Missense_Mutation p.T291I 0.42 tolerated(0.52) benign(0.015) TCGA-FS-A1ZQ-06 1 145531024 145531024 C T ITGA10 Silent p.A252A 0.20 TCGA-FS-A1ZQ-06 1 152281693 152281693 G A FLG Missense_Mutation p.S1890F 0.31 possibly_damaging(0.788) TCGA-FS-A1ZQ-06 1 152282477 152282477 C T FLG Missense_Mutation p.G1629S 0.31 possibly_damaging(0.855) TCGA-FS-A1ZQ-06 1 152282710 152282710 C T FLG Missense_Mutation p.G1551E 0.27 probably_damaging(0.931) TCGA-FS-A1ZQ-06 1 152325386 152325386 C T FLG2 Missense_Mutation p.D1626N 0.43 possibly_damaging(0.811) TCGA-FS-A1ZQ-06 1 152326202 152326202 C T FLG2 Missense_Mutation p.E1354K 0.23 benign(0.063) TCGA-FS-A1ZQ-06 1 152382122 152382122 C T CRNN Missense_Mutation p.R479Q 0.28 tolerated(0.34) benign(0.002) TCGA-FS-A1ZQ-06 1 154698412 154698412 C T KCNN3 Missense_Mutation p.D561N 0.19 deleterious(0.03) benign(0.382) TCGA-FS-A1ZQ-06 1 155156512 155156512 C T TRIM46 Missense_Mutation p.S709F 0.52 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A1ZQ-06 1 156031064 156031064 C T RAB25 5'UTR 0.36 TCGA-FS-A1ZQ-06 1 156130705 156130705 C T SEMA4A Missense_Mutation p.S232F 0.43 deleterious(0.02) possibly_damaging(0.866) TCGA-FS-A1ZQ-06 1 158585152 158585152 G T SPTA1 Silent p.T2214T 0.29 TCGA-FS-A1ZQ-06 1 158906860 158906860 G A PYHIN1 Missense_Mutation p.E54K 0.37 tolerated(0.37) benign(0.262) TCGA-FS-A1ZQ-06 1 159558294 159558294 G A APCS Silent p.Q156Q 0.32 TCGA-FS-A1ZQ-06 1 159558342 159558342 G A APCS Silent p.E172E 0.49 TCGA-FS-A1ZQ-06 1 159904045 159904045 G A IGSF9 Missense_Mutation p.R347C 0.27 deleterious(0) probably_damaging(0.985) TCGA-FS-A1ZQ-06 1 168014467 168014467 T C DCAF6 Splice_Site p.X753_splice 0.19 TCGA-FS-A1ZQ-06 1 170961410 170961410 G A MROH9 Silent p.E378E 0.30 TCGA-FS-A1ZQ-06 1 172501640 172501640 C T SUCO 5'Flank 0.51 TCGA-FS-A1ZQ-06 1 17557156 17557156 C T PADI1 Silent p.F381F 0.35 TCGA-FS-A1ZQ-06 1 17603120 17603120 G A PADI3 Missense_Mutation p.D472N 0.29 tolerated(0.05) probably_damaging(0.956) TCGA-FS-A1ZQ-06 1 176671742 176671742 G A PAPPA2 Splice_Site p.X1079_splice 0.29 TCGA-FS-A1ZQ-06 1 177250635 177250635 G A BRINP2 Missense_Mutation p.E775K 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-FS-A1ZQ-06 1 178846662 178846662 G A RALGPS2 Missense_Mutation p.D213N 0.21 tolerated(0.1) possibly_damaging(0.756) TCGA-FS-A1ZQ-06 1 178846663 178846663 A T RALGPS2 Missense_Mutation p.D213V 0.21 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZQ-06 1 179631372 179631372 G A TDRD5 Missense_Mutation p.S819N 0.18 tolerated(0.3) benign(0.03) TCGA-FS-A1ZQ-06 1 179989945 179989945 A T CEP350 Missense_Mutation p.L1012F 0.29 benign(0.053) TCGA-FS-A1ZQ-06 1 180062691 180062691 C T CEP350 Missense_Mutation p.S2484F 0.29 benign(0.233) TCGA-FS-A1ZQ-06 1 181686335 181686335 A C CACNA1E Missense_Mutation p.K474N 0.09 deleterious(0.01) benign(0.403) TCGA-FS-A1ZQ-06 1 181765921 181765921 C T CACNA1E Missense_Mutation p.A2109V 0.47 tolerated(0.33) probably_damaging(0.935) TCGA-FS-A1ZQ-06 1 19443892 19443892 G A UBR4 Missense_Mutation p.S3549F 0.40 probably_damaging(0.962) TCGA-FS-A1ZQ-06 1 197398663 197398663 G A CRB1 Missense_Mutation p.A921T 0.42 tolerated(0.21) possibly_damaging(0.886) TCGA-FS-A1ZQ-06 1 198725200 198725200 C T PTPRC Missense_Mutation p.L1271F 0.26 deleterious(0.02) benign(0.223) TCGA-FS-A1ZQ-06 1 200960786 200960786 T G KIF21B Missense_Mutation p.E818A 0.54 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZQ-06 1 205027462 205027462 G A CNTN2 Silent p.R123R 0.39 TCGA-FS-A1ZQ-06 1 205739492 205739492 G A RAB7L1 Missense_Mutation p.S197F 0.19 deleterious(0.01) benign(0.109) TCGA-FS-A1ZQ-06 1 218475769 218475769 C T RRP15 Silent p.G91G 0.25 TCGA-FS-A1ZQ-06 1 220311351 220311351 C T IARS2 Missense_Mutation p.S714F 0.27 deleterious(0.03) benign(0.275) TCGA-FS-A1ZQ-06 1 220789325 220789325 C T MARK1 Silent p.H180H 0.29 TCGA-FS-A1ZQ-06 1 226019506 226019506 C T EPHX1 Silent p.F70F 0.32 TCGA-FS-A1ZQ-06 1 227618339 227618339 C T CTD-2090I13.1 RNA 0.31 TCGA-FS-A1ZQ-06 1 231858340 231858340 C T DISC1 Intron 0.28 TCGA-FS-A1ZQ-06 1 233275579 233275579 G A PCNXL2 Silent p.F1180F 0.24 TCGA-FS-A1ZQ-06 1 23418816 23418816 G A LUZP1 Nonsense_Mutation p.R647* 0.43 TCGA-FS-A1ZQ-06 1 235969602 235969602 G A LYST Missense_Mutation p.S945F 0.42 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-FS-A1ZQ-06 1 237850796 237850796 C T RYR2 Missense_Mutation p.S3020L 0.18 possibly_damaging(0.854) TCGA-FS-A1ZQ-06 1 240371478 240371478 C T FMN2 Silent p.P1122P 0.53 TCGA-FS-A1ZQ-06 1 240975228 240975228 C T RGS7 Missense_Mutation p.E358K 0.54 deleterious(0.01) possibly_damaging(0.662) TCGA-FS-A1ZQ-06 1 241752099 241752099 G A KMO Silent p.A355A 0.23 TCGA-FS-A1ZQ-06 1 243589849 243589849 G A SDCCAG8 Silent p.T658T 0.45 TCGA-FS-A1ZQ-06 1 24484325 24484325 G A IFNLR1 Silent p.S286S 0.29 TCGA-FS-A1ZQ-06 1 248112734 248112734 G A OR2L8 Nonsense_Mutation p.W192* 0.32 TCGA-FS-A1ZQ-06 1 248458752 248458752 C T OR2T12 Missense_Mutation p.M43I 0.36 deleterious(0.03) benign(0.026) TCGA-FS-A1ZQ-06 1 248637188 248637188 C T OR2T3 Silent p.I179I 0.37 TCGA-FS-A1ZQ-06 1 29581881 29581881 C T PTPRU Silent p.I56I 0.33 TCGA-FS-A1ZQ-06 1 32096252 32096252 C G PEF1 Missense_Mutation p.E273Q 0.14 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZQ-06 1 32560459 32560459 C T TMEM39B Silent p.L334L 0.45 TCGA-FS-A1ZQ-06 1 34090134 34090134 T C CSMD2 Silent p.E1830E 0.45 TCGA-FS-A1ZQ-06 1 41283874 41283874 C T KCNQ4 Silent p.I148I 0.30 TCGA-FS-A1ZQ-06 1 46093842 46093842 A G GPBP1L1 3'UTR 0.33 TCGA-FS-A1ZQ-06 1 46195343 46195343 G A IPP Silent p.L275L 0.38 TCGA-FS-A1ZQ-06 1 47333640 47333640 C T CYP4Z2P RNA 0.31 TCGA-FS-A1ZQ-06 1 47333652 47333652 C T CYP4Z2P RNA 0.24 TCGA-FS-A1ZQ-06 1 47399653 47399653 G A CYP4A11 Missense_Mutation p.P396L 0.28 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZQ-06 1 47533216 47533216 C T CYP4Z1 Silent p.I18I 0.33 TCGA-FS-A1ZQ-06 1 53927154 53927154 C T DMRTB1 Silent p.L196L 0.37 TCGA-FS-A1ZQ-06 1 55072900 55072900 C T ACOT11 Silent p.F488F 0.27 TCGA-FS-A1ZQ-06 1 57257776 57257776 C T C1orf168 Missense_Mutation p.S237N 0.35 tolerated(0.18) benign(0.045) TCGA-FS-A1ZQ-06 1 57349331 57349331 G A C8A Missense_Mutation p.E278K 0.33 tolerated(0.46) benign(0.004) TCGA-FS-A1ZQ-06 1 68955286 68955286 G A DEPDC1 Missense_Mutation p.P107L 0.29 deleterious(0.02) benign(0.162) TCGA-FS-A1ZQ-06 1 74737367 74737367 T G FPGT-TNNI3K Missense_Mutation p.I254S 0.35 deleterious(0) possibly_damaging(0.568) TCGA-FS-A1ZQ-06 1 84876537 84876537 C T DNASE2B Silent p.N134N 0.09 TCGA-FS-A1ZQ-06 1 85742019 85742019 G T BCL10 Missense_Mutation p.P6Q 0.11 deleterious(0.04) possibly_damaging(0.605) TCGA-FS-A1ZQ-06 1 9017341 9017341 C T CA6 Silent p.I135I 0.47 TCGA-FS-A1ZQ-06 1 91843722 91843722 C T HFM1 Missense_Mutation p.E419K 0.33 tolerated(0.07) possibly_damaging(0.665) TCGA-FS-A1ZQ-06 20 12989745 12989745 G A SPTLC3 5'UTR 0.45 TCGA-FS-A1ZQ-06 20 13869134 13869134 C T SEL1L2 Missense_Mutation p.G192R 0.34 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZQ-06 20 1456749 1456749 G A SIRPB2 3'UTR 0.54 TCGA-FS-A1ZQ-06 20 20051576 20051576 C T C20orf26 Silent p.P74P 0.32 TCGA-FS-A1ZQ-06 20 21494276 21494276 G A NKX2-2 Missense_Mutation p.S11L 0.39 deleterious(0) probably_damaging(0.925) TCGA-FS-A1ZQ-06 20 21687290 21687290 G A PAX1 Silent p.G167G 0.49 TCGA-FS-A1ZQ-06 20 23064452 23064452 G A CD93 3'UTR 0.24 TCGA-FS-A1ZQ-06 20 29965177 29965177 C T DEFB118 3'Flank 0.35 TCGA-FS-A1ZQ-06 20 3026876 3026876 C T MRPS26 Silent p.F54F 0.35 TCGA-FS-A1ZQ-06 20 33876313 33876313 C T FAM83C Missense_Mutation p.E253K 0.37 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 20 37400315 37400315 G A ACTR5 Silent p.K560K 0.40 TCGA-FS-A1ZQ-06 20 40739014 40739014 G A PTPRT Silent p.F1071F 0.35 TCGA-FS-A1ZQ-06 20 40980844 40980844 C T PTPRT Missense_Mutation p.E548K 0.35 tolerated(0.09) benign(0.44) TCGA-FS-A1ZQ-06 20 44569573 44569573 C T PCIF1 Silent p.P171P 0.41 TCGA-FS-A1ZQ-06 20 45808552 45808552 C T EYA2 Silent p.I435I 0.28 TCGA-FS-A1ZQ-06 20 47881325 47881325 G A ZNFX1 Silent p.T693T 0.33 TCGA-FS-A1ZQ-06 20 47990861 47990861 G A KCNB1 Silent p.I412I 0.24 TCGA-FS-A1ZQ-06 20 50769429 50769429 G A ZFP64 Silent p.F434F 0.29 TCGA-FS-A1ZQ-06 20 6022124 6022124 C T LRRN4 Silent p.T589T 0.33 TCGA-FS-A1ZQ-06 20 60498655 60498655 C T CDH4 Silent p.F507F 0.46 TCGA-FS-A1ZQ-06 20 61511288 61511288 G A DIDO1 Missense_Mutation p.S2007L 0.34 benign(0.089) TCGA-FS-A1ZQ-06 20 62328225 62328225 C T TNFRSF6B Silent p.T35T 0.55 TCGA-FS-A1ZQ-06 20 9433991 9433991 C T PLCB4 Intron 0.38 TCGA-FS-A1ZQ-06 20 9434089 9434089 G A PLCB4 Silent p.E980E 0.47 TCGA-FS-A1ZQ-06 21 30409680 30409680 G A USP16 Missense_Mutation p.E178K 0.47 tolerated(0.72) benign(0.008) TCGA-FS-A1ZQ-06 21 32493137 32493137 G A TIAM1 Missense_Mutation p.S1442F 0.25 deleterious(0) benign(0.396) TCGA-FS-A1ZQ-06 21 33956602 33956602 G A TCP10L Nonsense_Mutation p.Q5* 0.33 TCGA-FS-A1ZQ-06 21 34927526 34927526 C T SON Missense_Mutation p.R1997C 0.33 unknown(0) TCGA-FS-A1ZQ-06 22 21377663 21377663 C T P2RX6 Silent p.L246L 0.35 TCGA-FS-A1ZQ-06 22 22890990 22890990 G A PRAME Silent p.S343S 0.36 TCGA-FS-A1ZQ-06 22 23011165 23011165 C T IGLV3-27 Silent p.I76I 0.35 TCGA-FS-A1ZQ-06 22 23915367 23915367 G A IGLL1 3'UTR 0.38 TCGA-FS-A1ZQ-06 22 26165122 26165122 G A MYO18B Silent p.E413E 0.22 TCGA-FS-A1ZQ-06 22 26690291 26690291 G A SEZ6L Missense_Mutation p.G290E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 22 27012285 27012285 G A CRYBB1 5'UTR 0.44 TCGA-FS-A1ZQ-06 22 37329990 37329990 G A CSF2RB Silent p.G423G 0.36 TCGA-FS-A1ZQ-06 22 38379572 38379572 C T SOX10 Missense_Mutation p.E74K 0.36 deleterious(0) possibly_damaging(0.599) TCGA-FS-A1ZQ-06 22 40078628 40078628 A G CACNA1I Missense_Mutation p.N1931S 0.27 tolerated(0.39) benign(0.292) TCGA-FS-A1ZQ-06 22 44112819 44112819 G A EFCAB6 Missense_Mutation p.S264F 0.26 tolerated(0.1) benign(0.008) TCGA-FS-A1ZQ-06 22 45244853 45244853 C T ARHGAP8 Missense_Mutation p.P386S 0.34 deleterious(0.03) probably_damaging(0.947) TCGA-FS-A1ZQ-06 22 50169268 50169268 G A BRD1 Silent p.L988L 0.41 TCGA-FS-A1ZQ-06 22 50664720 50664720 G A TUBGCP6 Silent p.F563F 0.44 TCGA-FS-A1ZQ-06 22 50894685 50894685 G A SBF1 Missense_Mutation p.S1409F 0.20 deleterious(0) possibly_damaging(0.632) TCGA-FS-A1ZQ-06 2 102638686 102638686 C T IL1R2 Silent p.P242P 0.24 TCGA-FS-A1ZQ-06 2 107040826 107040826 C T RGPD3 Silent p.K1199K 0.36 TCGA-FS-A1ZQ-06 2 112755015 112755015 C T MERTK Silent p.S522S 0.31 TCGA-FS-A1ZQ-06 2 130832816 130832816 C T POTEF Missense_Mutation p.M743I 0.38 tolerated_low_confidence(0.26) benign(0.034) TCGA-FS-A1ZQ-06 2 141264470 141264470 C T LRP1B Missense_Mutation p.D2806N 0.28 possibly_damaging(0.822) TCGA-FS-A1ZQ-06 2 141739790 141739790 T C LRP1B Silent p.R942R 0.11 TCGA-FS-A1ZQ-06 2 149226884 149226884 C T MBD5 Nonsense_Mutation p.Q458* 0.48 TCGA-FS-A1ZQ-06 2 158157217 158157217 C T GALNT5 Silent p.I715I 0.30 TCGA-FS-A1ZQ-06 2 166895947 166895947 G A SCN1A Missense_Mutation p.R859C 0.31 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZQ-06 2 16742506 16742506 G A FAM49A Nonsense_Mutation p.R185* 0.37 TCGA-FS-A1ZQ-06 2 167992518 167992518 G A XIRP2 Missense_Mutation p.E170K 0.33 benign(0.024) TCGA-FS-A1ZQ-06 2 168100889 168100889 G A XIRP2 Missense_Mutation p.G996E 0.41 probably_damaging(1) TCGA-FS-A1ZQ-06 2 171259451 171259451 C T MYO3B Silent p.I741I 0.23 TCGA-FS-A1ZQ-06 2 175613332 175613332 C T CHRNA1 Missense_Mutation p.M431I 0.35 tolerated(0.3) benign(0.099) TCGA-FS-A1ZQ-06 2 177036457 177036457 G A HOXD3 Missense_Mutation p.D252N 0.25 deleterious(0) benign(0) TCGA-FS-A1ZQ-06 2 179411964 179411964 C T TTN Missense_Mutation p.E31430K 0.42 TCGA-FS-A1ZQ-06 2 179428836 179428836 C A TTN Silent p.R27341R 0.37 TCGA-FS-A1ZQ-06 2 179431857 179431857 C T TTN Nonsense_Mutation p.W26334* 0.32 TCGA-FS-A1ZQ-06 2 179474029 179474029 G A TTN Silent p.V17336V 0.29 TCGA-FS-A1ZQ-06 2 179498381 179498381 C T TTN Silent p.V14235V 0.40 TCGA-FS-A1ZQ-06 2 179517007 179517007 T C TTN Silent p.E13065E 0.10 TCGA-FS-A1ZQ-06 2 179529579 179529579 C T TTN Missense_Mutation p.V12040M 0.60 TCGA-FS-A1ZQ-06 2 179553407 179553407 C T TTN Missense_Mutation p.E10732K 0.22 TCGA-FS-A1ZQ-06 2 179586730 179586730 C T TTN Missense_Mutation p.E7554K 0.34 TCGA-FS-A1ZQ-06 2 179590565 179590565 G A TTN Silent p.I6828I 0.40 TCGA-FS-A1ZQ-06 2 179596099 179596099 C T TTN Silent p.G5798G 0.30 TCGA-FS-A1ZQ-06 2 179644115 179644115 T A TTN Missense_Mutation p.E1268D 0.30 TCGA-FS-A1ZQ-06 2 183129112 183129112 C T PDE1A Missense_Mutation p.R44K 0.38 tolerated(1) benign(0.001) TCGA-FS-A1ZQ-06 2 188216985 188216985 G A CALCRL Silent p.S328S 0.30 TCGA-FS-A1ZQ-06 2 189927735 189927735 C T COL5A2 Splice_Site p.X641_splice 0.35 TCGA-FS-A1ZQ-06 2 196661442 196661442 A G DNAH7 Missense_Mutation p.L3458P 0.10 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZQ-06 2 196891526 196891526 C T DNAH7 Missense_Mutation p.E209K 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-FS-A1ZQ-06 2 197184087 197184087 C T HECW2 Silent p.E509E 0.29 TCGA-FS-A1ZQ-06 2 202343314 202343314 C T STRADB Missense_Mutation p.P354S 0.17 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZQ-06 2 216965042 216965042 C T TMEM169 Missense_Mutation p.S224F 0.28 tolerated(0.09) benign(0.011) TCGA-FS-A1ZQ-06 2 219249953 219249953 G A SLC11A1 Silent p.K119K 0.18 TCGA-FS-A1ZQ-06 2 228882709 228882709 C T SPHKAP Missense_Mutation p.G954E 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 2 237028968 237028968 C A AGAP1 Silent p.I749I 0.48 TCGA-FS-A1ZQ-06 2 237028969 237028969 C T AGAP1 Silent p.L750L 0.51 TCGA-FS-A1ZQ-06 2 240981381 240981381 G A PRR21 Missense_Mutation p.S340L 0.41 tolerated_low_confidence(0.51) unknown(0) TCGA-FS-A1ZQ-06 2 241831074 241831074 C T C2orf54 Silent p.R207R 0.42 TCGA-FS-A1ZQ-06 2 27605342 27605342 C T PPM1G Splice_Site p.X444_splice 0.32 TCGA-FS-A1ZQ-06 2 32724761 32724761 T C BIRC6 Silent p.T2872T 0.31 TCGA-FS-A1ZQ-06 2 32724764 32724764 C T BIRC6 Silent p.C2873C 0.31 TCGA-FS-A1ZQ-06 2 68873196 68873196 C T PROKR1 Silent p.F81F 0.31 TCGA-FS-A1ZQ-06 2 71743372 71743372 G A DYSF Silent p.T317T 0.38 TCGA-FS-A1ZQ-06 2 71895914 71895914 C T DYSF Missense_Mutation p.P1830S 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 2 80540772 80540772 G A CTNNA2 Intron 0.56 TCGA-FS-A1ZQ-06 2 86711263 86711263 G T KDM3A Nonsense_Mutation p.G1026* 0.51 TCGA-FS-A1ZQ-06 2 88402627 88402627 G A SMYD1 Silent p.L313L 0.40 TCGA-FS-A1ZQ-06 2 97849224 97849224 G A ANKRD36 Silent p.K622K 0.33 TCGA-FS-A1ZQ-06 2 98354284 98354284 T C ZAP70 Missense_Mutation p.F516S 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 2 98804458 98804458 C T VWA3B Silent p.V444V 0.52 TCGA-FS-A1ZQ-06 3 10312400 10312400 C T TATDN2 Nonsense_Mutation p.Q512* 0.74 TCGA-FS-A1ZQ-06 3 119190197 119190197 C T POGLUT1 Missense_Mutation p.S73F 0.38 deleterious(0.04) benign(0.049) TCGA-FS-A1ZQ-06 3 127411046 127411046 G A MGLL Missense_Mutation p.P313S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 3 128695841 128695841 C T KIAA1257 Missense_Mutation p.D293N 0.33 tolerated(0.26) possibly_damaging(0.602) TCGA-FS-A1ZQ-06 3 129276010 129276010 G A PLXND1 Silent p.I1834I 0.25 TCGA-FS-A1ZQ-06 3 132337456 132337456 T G ACAD11 Intron 0.40 TCGA-FS-A1ZQ-06 3 13679197 13679197 C T FBLN2 Silent p.A1158A 0.33 TCGA-FS-A1ZQ-06 3 148599379 148599379 C T CPA3 Missense_Mutation p.P216L 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 3 148857936 148857936 C T HPS3 Silent p.F121F 0.41 TCGA-FS-A1ZQ-06 3 150877779 150877779 G A MED12L Missense_Mutation p.S333N 0.24 tolerated(0.41) probably_damaging(0.994) TCGA-FS-A1ZQ-06 3 15498005 15498005 G A COLQ Silent p.L346L 0.62 TCGA-FS-A1ZQ-06 3 158261266 158261266 C T RSRC1 Missense_Mutation p.A301V 0.23 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FS-A1ZQ-06 3 159606659 159606659 A G IQCJ-SCHIP1 Silent p.K491K 0.38 TCGA-FS-A1ZQ-06 3 160474204 160474204 G A PPM1L Nonsense_Mutation p.W36* 0.15 TCGA-FS-A1ZQ-06 3 161221535 161221535 C G OTOL1 Missense_Mutation p.F413L 0.27 tolerated(1) possibly_damaging(0.505) TCGA-FS-A1ZQ-06 3 169496853 169496853 C T MYNN Silent p.S188S 0.25 TCGA-FS-A1ZQ-06 3 172473144 172473144 G A ECT2 Missense_Mutation p.E64K 0.37 tolerated(0.13) benign(0.14) TCGA-FS-A1ZQ-06 3 178742774 178742774 G A ZMAT3 3'UTR 0.34 TCGA-FS-A1ZQ-06 3 183017899 183017899 G A MCF2L2 Missense_Mutation p.P400L 0.21 deleterious(0.01) possibly_damaging(0.468) TCGA-FS-A1ZQ-06 3 184091239 184091239 G A THPO Silent p.L120L 0.17 TCGA-FS-A1ZQ-06 3 185997672 185997672 G A DGKG Missense_Mutation p.P254S 0.42 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZQ-06 3 190322008 190322008 C T IL1RAP Silent p.H52H 0.22 TCGA-FS-A1ZQ-06 3 193207525 193207525 G A ATP13A4 Silent p.L244L 0.34 TCGA-FS-A1ZQ-06 3 26751332 26751332 G A LRRC3B Missense_Mutation p.E57K 0.65 tolerated(0.07) probably_damaging(0.946) TCGA-FS-A1ZQ-06 3 3886446 3886446 C T LRRN1 Missense_Mutation p.R41C 0.62 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZQ-06 3 38888196 38888196 G A SCN11A Missense_Mutation p.H1789Y 0.49 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZQ-06 3 38950496 38950496 C T SCN11A Missense_Mutation p.E431K 0.61 tolerated(0.43) probably_damaging(0.998) TCGA-FS-A1ZQ-06 3 42242537 42242537 C T TRAK1 Missense_Mutation p.A473V 0.09 tolerated(0.22) benign(0.217) TCGA-FS-A1ZQ-06 3 42679340 42679340 C T NKTR Missense_Mutation p.S715L 0.62 deleterious_low_confidence(0.04) probably_damaging(0.95) TCGA-FS-A1ZQ-06 3 49689299 49689299 C T BSN Silent p.A770A 0.62 TCGA-FS-A1ZQ-06 3 49689342 49689342 G A BSN Missense_Mutation p.E785K 0.48 unknown(0) TCGA-FS-A1ZQ-06 3 49692341 49692341 C T BSN Silent p.A1784A 0.68 TCGA-FS-A1ZQ-06 3 49713332 49713332 G A APEH Silent p.E125E 0.40 TCGA-FS-A1ZQ-06 3 50339712 50339712 G A HYAL1 Missense_Mutation p.R226C 0.65 tolerated(0.21) benign(0.008) TCGA-FS-A1ZQ-06 3 52328355 52328355 C T GLYCTK 3'Flank 0.64 TCGA-FS-A1ZQ-06 3 54952869 54952869 T A LRTM1 Nonsense_Mutation p.K219* 0.71 TCGA-FS-A1ZQ-06 3 56468884 56468884 G A ERC2 Missense_Mutation p.S51F 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZQ-06 3 7620951 7620951 A C GRM7 Missense_Mutation p.E786D 0.14 deleterious(0) possibly_damaging(0.838) TCGA-FS-A1ZQ-06 3 98072707 98072707 G A OR5K4 Missense_Mutation p.E4K 0.32 tolerated(0.28) benign(0.006) TCGA-FS-A1ZQ-06 3 99513711 99513711 G A COL8A1 Silent p.G322G 0.24 TCGA-FS-A1ZQ-06 4 110925678 110925678 C T EGF Missense_Mutation p.S1064L 0.37 tolerated(0.72) benign(0.001) TCGA-FS-A1ZQ-06 4 111397573 111397573 G A ENPEP Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FS-A1ZQ-06 4 123113461 123113461 C T KIAA1109 Missense_Mutation p.P327S 0.37 probably_damaging(0.998) TCGA-FS-A1ZQ-06 4 123533869 123533869 G A IL21 Missense_Mutation p.S162F 0.26 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-FS-A1ZQ-06 4 147561591 147561591 G A POU4F2 Silent p.K287K 0.27 TCGA-FS-A1ZQ-06 4 151203748 151203748 C T LRBA Missense_Mutation p.E2735K 0.35 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZQ-06 4 155278420 155278420 C T DCHS2 Missense_Mutation p.E251K 0.38 tolerated(0.89) benign(0.001) TCGA-FS-A1ZQ-06 4 155461993 155461993 G A PLRG1 Silent p.L261L 0.34 TCGA-FS-A1ZQ-06 4 158073936 158073936 C T GLRB Missense_Mutation p.S324F 0.38 deleterious(0) probably_damaging(0.964) TCGA-FS-A1ZQ-06 4 165891010 165891010 C T TRIM61 Missense_Mutation p.D49N 0.15 tolerated(0.1) benign(0.377) TCGA-FS-A1ZQ-06 4 175897197 175897197 G A ADAM29 Missense_Mutation p.R174Q 0.31 tolerated(1) benign(0) TCGA-FS-A1ZQ-06 4 189068190 189068190 C T TRIML1 Silent p.I357I 0.35 TCGA-FS-A1ZQ-06 4 20598263 20598263 G A SLIT2 Silent p.T1182T 0.40 TCGA-FS-A1ZQ-06 4 20728951 20728951 C T PACRGL Missense_Mutation p.S245F 0.31 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 4 36230649 36230649 G A ARAP2 Missense_Mutation p.P154S 0.38 tolerated_low_confidence(0.33) benign(0.007) TCGA-FS-A1ZQ-06 4 42545962 42545962 C T ATP8A1 Missense_Mutation p.G565E 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-FS-A1ZQ-06 4 42554606 42554606 C T ATP8A1 Missense_Mutation p.E479K 0.47 deleterious(0.01) possibly_damaging(0.735) TCGA-FS-A1ZQ-06 4 70066438 70066438 C T UGT2B11 Splice_Site p.X437_splice 0.28 TCGA-FS-A1ZQ-06 4 74302028 74302028 G A AFP Missense_Mutation p.E17K 0.43 tolerated(0.74) benign(0.425) TCGA-FS-A1ZQ-06 4 85676491 85676491 G A WDFY3 Silent p.V1829V 0.48 TCGA-FS-A1ZQ-06 4 88243956 88243956 G A HSD17B13 Missense_Mutation p.T13I 0.36 tolerated(0.66) unknown(0) TCGA-FS-A1ZQ-06 4 88996693 88996693 C T PKD2 Silent p.S918S 0.36 TCGA-FS-A1ZQ-06 4 9784439 9784439 G A DRD5 Silent p.L262L 0.33 TCGA-FS-A1ZQ-06 4 9784440 9784440 G A DRD5 Missense_Mutation p.E263K 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 4 9784667 9784667 G A DRD5 Silent p.E338E 0.45 TCGA-FS-A1ZQ-06 4 99806186 99806186 A G EIF4E Silent p.F173F 0.44 TCGA-FS-A1ZQ-06 5 10239213 10239213 G A FAM173B Missense_Mutation p.S91F 0.36 deleterious(0.01) possibly_damaging(0.878) TCGA-FS-A1ZQ-06 5 112868587 112868587 C T YTHDC2 Silent p.F229F 0.76 TCGA-FS-A1ZQ-06 5 131066709 131066709 A C FNIP1 Missense_Mutation p.V81G 0.75 tolerated(0.18) probably_damaging(0.999) TCGA-FS-A1ZQ-06 5 13717504 13717504 G A DNAH5 Missense_Mutation p.P4209S 0.47 possibly_damaging(0.876) TCGA-FS-A1ZQ-06 5 13737541 13737541 C T DNAH5 Missense_Mutation p.E3759K 0.44 possibly_damaging(0.621) TCGA-FS-A1ZQ-06 5 137486557 137486557 C T BRD8 Silent p.E999E 0.66 TCGA-FS-A1ZQ-06 5 13753569 13753569 C T DNAH5 Missense_Mutation p.E3549K 0.35 possibly_damaging(0.621) TCGA-FS-A1ZQ-06 5 140221258 140221258 C T PCDHA8 Missense_Mutation p.H118Y 0.61 deleterious_low_confidence(0) benign(0.195) TCGA-FS-A1ZQ-06 5 140579560 140579560 G A PCDHB11 Silent p.K71K 0.73 TCGA-FS-A1ZQ-06 5 140603558 140603558 G A PCDHB14 Missense_Mutation p.D161N 0.76 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZQ-06 5 149324129 149324129 G A PDE6A Silent p.L36L 0.72 TCGA-FS-A1ZQ-06 5 150838400 150838400 C T SLC36A1 Missense_Mutation p.S16F 0.72 tolerated(0.09) benign(0.005) TCGA-FS-A1ZQ-06 5 175793397 175793397 G A ARL10 Silent p.E66E 0.70 TCGA-FS-A1ZQ-06 5 180166281 180166281 G A OR2Y1 Nonsense_Mutation p.Q260* 0.70 TCGA-FS-A1ZQ-06 5 180582587 180582587 C T OR2V2 Silent p.I215I 0.67 TCGA-FS-A1ZQ-06 5 19591191 19591191 C T CDH18 Missense_Mutation p.R325K 0.39 tolerated(0.09) benign(0.004) TCGA-FS-A1ZQ-06 5 24505343 24505343 C T CDH10 Missense_Mutation p.R424H 0.41 tolerated(0.18) benign(0.368) TCGA-FS-A1ZQ-06 5 35010173 35010173 C T AGXT2 Missense_Mutation p.E424K 0.33 tolerated(1) benign(0.1) TCGA-FS-A1ZQ-06 5 37157847 37157847 G A C5orf42 Missense_Mutation p.P2628S 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-FS-A1ZQ-06 5 40981538 40981538 G A C7 Missense_Mutation p.E799K 0.68 tolerated(0.21) benign(0.004) TCGA-FS-A1ZQ-06 5 41049436 41049436 T A MROH2B Nonsense_Mutation p.K483* 0.19 TCGA-FS-A1ZQ-06 5 41149356 41149356 C T C6 Nonsense_Mutation p.W870* 0.38 TCGA-FS-A1ZQ-06 5 42801518 42801518 G A CCDC152 3'UTR 0.52 TCGA-FS-A1ZQ-06 5 45462025 45462025 C T HCN1 Missense_Mutation p.D312N 0.50 tolerated(0.23) probably_damaging(0.996) TCGA-FS-A1ZQ-06 5 82833328 82833328 C T VCAN Silent p.P1502P 0.56 TCGA-FS-A1ZQ-06 5 92929610 92929610 G A NR2F1 3'UTR 0.74 TCGA-FS-A1ZQ-06 6 101847129 101847129 C T GRIK2 5'UTR 0.58 TCGA-FS-A1ZQ-06 6 117714445 117714445 C T ROS1 Missense_Mutation p.E402K 0.65 tolerated(0.13) benign(0.169) TCGA-FS-A1ZQ-06 6 121481218 121481218 G A TBC1D32 Missense_Mutation p.S904L 0.49 tolerated(0.12) possibly_damaging(0.46) TCGA-FS-A1ZQ-06 6 143081308 143081308 G A HIVEP2 Silent p.F2039F 0.61 TCGA-FS-A1ZQ-06 6 170632278 170632278 C T FAM120B Missense_Mutation p.P616S 0.73 tolerated(0.06) probably_damaging(0.993) TCGA-FS-A1ZQ-06 6 17817358 17817358 G A KIF13A Silent p.L631L 0.37 TCGA-FS-A1ZQ-06 6 27424695 27424695 G A ZNF184 Nonsense_Mutation p.Q70* 0.44 TCGA-FS-A1ZQ-06 6 28478531 28478531 G A GPX6 Missense_Mutation p.P80S 0.33 tolerated(0.44) benign(0.054) TCGA-FS-A1ZQ-06 6 28500198 28500198 G A GPX5 Splice_Site p.X153_splice 0.27 TCGA-FS-A1ZQ-06 6 30121795 30121795 G A TRIM10 Missense_Mutation p.P466L 0.27 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZQ-06 6 31130451 31130451 C A TCF19 Missense_Mutation p.A332D 0.10 deleterious(0.01) possibly_damaging(0.887) TCGA-FS-A1ZQ-06 6 31543505 31543505 C T TNF 5'UTR 0.22 TCGA-FS-A1ZQ-06 6 32026065 32026065 C T TNXB Missense_Mutation p.G2532E 0.47 benign(0.013) TCGA-FS-A1ZQ-06 6 32784749 32784749 G A HLA-DOB 5'UTR 0.33 TCGA-FS-A1ZQ-06 6 33156784 33156784 G A COL11A2 Silent p.V138V 0.23 TCGA-FS-A1ZQ-06 6 33371517 33371517 C T KIFC1 Missense_Mutation p.P123S 0.57 tolerated(0.18) benign(0.004) TCGA-FS-A1ZQ-06 6 38854694 38854694 G A DNAH8 Missense_Mutation p.R2579Q 0.40 probably_damaging(1) TCGA-FS-A1ZQ-06 6 39159497 39159497 G A KCNK5 Silent p.Y223Y 0.28 TCGA-FS-A1ZQ-06 6 39563951 39563951 C T KIF6 Missense_Mutation p.R242Q 0.31 tolerated(0.05) possibly_damaging(0.893) TCGA-FS-A1ZQ-06 6 40359697 40359697 C T LRFN2 Missense_Mutation p.M785I 0.31 tolerated(0.06) probably_damaging(0.914) TCGA-FS-A1ZQ-06 6 47654739 47654739 C T GPR111 3'Flank 0.28 TCGA-FS-A1ZQ-06 6 49754580 49754580 G A PGK2 Silent p.A107A 0.34 TCGA-FS-A1ZQ-06 6 53989277 53989277 T A MLIP Missense_Mutation p.S76T 0.44 tolerated(0.43) possibly_damaging(0.461) TCGA-FS-A1ZQ-06 6 55223796 55223796 G A GFRAL Missense_Mutation p.G271E 0.39 tolerated(0.06) possibly_damaging(0.728) TCGA-FS-A1ZQ-06 6 63991013 63991013 A G LGSN Missense_Mutation p.V148A 0.07 deleterious(0) possibly_damaging(0.777) TCGA-FS-A1ZQ-06 6 7569418 7569418 G A DSP Splice_Site p.X474_splice 0.44 TCGA-FS-A1ZQ-06 7 100349913 100349913 G A ZAN Missense_Mutation p.E729K 0.34 possibly_damaging(0.486) TCGA-FS-A1ZQ-06 7 100421842 100421842 G A EPHB4 Missense_Mutation p.P36S 0.42 deleterious(0.05) benign(0.347) TCGA-FS-A1ZQ-06 7 100460418 100460418 G A SLC12A9 Silent p.G609G 0.26 TCGA-FS-A1ZQ-06 7 100460419 100460419 G A SLC12A9 Missense_Mutation p.A610T 0.26 tolerated(0.5) benign(0.007) TCGA-FS-A1ZQ-06 7 100610339 100610339 C T MUC3A 3'UTR 0.20 TCGA-FS-A1ZQ-06 7 100841986 100841986 G A MOGAT3 Silent p.F138F 0.39 TCGA-FS-A1ZQ-06 7 103124250 103124250 C T RELN Missense_Mutation p.S3344N 0.38 tolerated(0.24) benign(0.41) TCGA-FS-A1ZQ-06 7 106513203 106513203 A T PIK3CG Missense_Mutation p.I703L 0.39 deleterious(0.02) possibly_damaging(0.531) TCGA-FS-A1ZQ-06 7 107415298 107415298 C T SLC26A3 Missense_Mutation p.R566Q 0.41 tolerated(0.06) benign(0.382) TCGA-FS-A1ZQ-06 7 113518396 113518396 G A PPP1R3A Silent p.S917S 0.25 TCGA-FS-A1ZQ-06 7 113518865 113518865 C T PPP1R3A Missense_Mutation p.R761Q 0.31 tolerated(0.18) benign(0.052) TCGA-FS-A1ZQ-06 7 136700475 136700475 C T CHRM2 Missense_Mutation p.S288L 0.39 tolerated(0.09) benign(0.071) TCGA-FS-A1ZQ-06 7 137237174 137237174 C T DGKI Silent p.R696R 0.29 TCGA-FS-A1ZQ-06 7 141635712 141635712 A T CLEC5A Missense_Mutation p.F83I 0.48 deleterious(0) possibly_damaging(0.858) TCGA-FS-A1ZQ-06 7 141719039 141719039 G A MGAM Missense_Mutation p.G123E 0.35 tolerated(0.4) benign(0.024) TCGA-FS-A1ZQ-06 7 141762434 141762434 G A MGAM Missense_Mutation p.E1397K 0.46 deleterious(0.04) possibly_damaging(0.807) TCGA-FS-A1ZQ-06 7 142458429 142458429 G A PRSS1 Missense_Mutation p.D22N 0.12 tolerated(0.08) benign(0.259) TCGA-FS-A1ZQ-06 7 143657954 143657954 G A OR2F1 Silent p.V297V 0.36 TCGA-FS-A1ZQ-06 7 144062336 144062336 C T ARHGEF5 Silent p.S858S 0.09 TCGA-FS-A1ZQ-06 7 148287942 148287942 G A C7orf33 5'UTR 0.42 TCGA-FS-A1ZQ-06 7 148802061 148802061 G A ZNF425 Missense_Mutation p.P301L 0.32 tolerated(0.06) benign(0.415) TCGA-FS-A1ZQ-06 7 148947573 148947573 C T ZNF212 Silent p.N116N 0.42 TCGA-FS-A1ZQ-06 7 150325450 150325450 G A GIMAP6 Missense_Mutation p.S79F 0.45 tolerated(1) benign(0.001) TCGA-FS-A1ZQ-06 7 150553714 150553714 G A AOC1 Silent p.K52K 0.39 TCGA-FS-A1ZQ-06 7 151917674 151917674 C T KMT2C Missense_Mutation p.V1216I 0.20 probably_damaging(0.958) TCGA-FS-A1ZQ-06 7 154862641 154862641 C T HTR5A Missense_Mutation p.S11F 0.40 tolerated(0.45) benign(0) TCGA-FS-A1ZQ-06 7 157985158 157985158 C T PTPRN2 Missense_Mutation p.R137K 0.38 tolerated(0.2) benign(0.012) TCGA-FS-A1ZQ-06 7 158528282 158528282 G A ESYT2 Missense_Mutation p.S833L 0.41 deleterious(0.04) probably_damaging(0.946) TCGA-FS-A1ZQ-06 7 21827122 21827122 A T DNAH11 Missense_Mutation p.N3289I 0.41 possibly_damaging(0.642) TCGA-FS-A1ZQ-06 7 27135367 27135367 C T HOXA1 Silent p.V55V 0.23 TCGA-FS-A1ZQ-06 7 27181684 27181684 C T HOXA5 Missense_Mutation p.G195S 0.26 deleterious(0) probably_damaging(0.925) TCGA-FS-A1ZQ-06 7 31117614 31117614 G A ADCYAP1R1 Missense_Mutation p.G56R 0.39 tolerated(0.13) probably_damaging(0.986) TCGA-FS-A1ZQ-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.44 TCGA-FS-A1ZQ-06 7 38725113 38725113 G A FAM183B 3'UTR 0.44 TCGA-FS-A1ZQ-06 7 4152925 4152925 C T SDK1 Nonsense_Mutation p.R1147* 0.33 TCGA-FS-A1ZQ-06 7 44801501 44801501 C T ZMIZ2 Silent p.C531C 0.24 TCGA-FS-A1ZQ-06 7 45717629 45717629 C T ADCY1 Silent p.T589T 0.29 TCGA-FS-A1ZQ-06 7 50459562 50459562 G A IKZF1 Splice_Site p.X242_splice 0.44 TCGA-FS-A1ZQ-06 7 53104225 53104225 C T POM121L12 Silent p.V287V 0.35 TCGA-FS-A1ZQ-06 7 70597977 70597977 C T WBSCR17 Silent p.V63V 0.38 TCGA-FS-A1ZQ-06 7 796514 796514 C T HEATR2 Silent p.S451S 0.42 TCGA-FS-A1ZQ-06 7 81381514 81381514 C T HGF Missense_Mutation p.E183K 0.24 deleterious(0.04) probably_damaging(0.994) TCGA-FS-A1ZQ-06 7 82453723 82453723 C T PCLO Missense_Mutation p.D4809N 0.38 unknown(0) TCGA-FS-A1ZQ-06 7 82579037 82579037 G A PCLO Missense_Mutation p.L3623F 0.36 unknown(0) TCGA-FS-A1ZQ-06 7 82582358 82582358 C T PCLO Silent p.Q2637Q 0.41 TCGA-FS-A1ZQ-06 7 87037460 87037460 C G ABCB4 Missense_Mutation p.E1058Q 0.36 tolerated(0.21) benign(0.004) TCGA-FS-A1ZQ-06 7 87759716 87759716 G A ADAM22 Missense_Mutation p.R256Q 0.34 deleterious(0) probably_damaging(0.97) TCGA-FS-A1ZQ-06 7 88965621 88965621 C T ZNF804B Missense_Mutation p.H1109Y 0.34 tolerated(0.53) benign(0.005) TCGA-FS-A1ZQ-06 7 92735124 92735124 G A SAMD9 Missense_Mutation p.P96L 0.31 tolerated(0.42) benign(0.001) TCGA-FS-A1ZQ-06 7 92978050 92978050 C T CCDC132 Silent p.F745F 0.30 TCGA-FS-A1ZQ-06 7 99818436 99818436 G A PVRIG Missense_Mutation p.R217Q 0.45 tolerated(0.28) benign(0) TCGA-FS-A1ZQ-06 8 10756103 10756103 A G XKR6 Missense_Mutation p.C429R 0.37 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 8 10756104 10756104 G A XKR6 Silent p.F428F 0.43 TCGA-FS-A1ZQ-06 8 110453035 110453035 G A PKHD1L1 Silent p.R1351R 0.31 TCGA-FS-A1ZQ-06 8 118175718 118175718 T G SLC30A8 Missense_Mutation p.L260V 0.08 deleterious(0.02) possibly_damaging(0.895) TCGA-FS-A1ZQ-06 8 125551344 125551344 C T TATDN1 5'Flank 0.30 TCGA-FS-A1ZQ-06 8 125551345 125551345 C G TATDN1 5'Flank 0.30 TCGA-FS-A1ZQ-06 8 133595957 133595957 C T LRRC6 Missense_Mutation p.E404K 0.34 tolerated(0.36) benign(0.003) TCGA-FS-A1ZQ-06 8 141745357 141745357 G A PTK2 Nonsense_Mutation p.Q675* 0.39 TCGA-FS-A1ZQ-06 8 14412253 14412253 C T SGCZ Missense_Mutation p.M74I 0.23 deleterious(0) benign(0.181) TCGA-FS-A1ZQ-06 8 144997235 144997235 G A PLEC Nonsense_Mutation p.Q2425* 0.21 TCGA-FS-A1ZQ-06 8 145095179 145095179 C T SPATC1 Missense_Mutation p.S194F 0.36 deleterious(0) possibly_damaging(0.884) TCGA-FS-A1ZQ-06 8 145830929 145830929 G A ARHGAP39 Missense_Mutation p.S24L 0.35 deleterious_low_confidence(0.01) benign(0.299) TCGA-FS-A1ZQ-06 8 16001079 16001079 C T MSR1 Missense_Mutation p.G341R 0.33 tolerated(0.32) benign(0.013) TCGA-FS-A1ZQ-06 8 18258420 18258420 C T NAT2 3'UTR 0.45 TCGA-FS-A1ZQ-06 8 23003354 23003354 G A TNFRSF10D Missense_Mutation p.S188F 0.50 deleterious(0.04) possibly_damaging(0.55) TCGA-FS-A1ZQ-06 8 23155621 23155621 C T LOXL2 Missense_Mutation p.E754K 0.51 tolerated(0.23) benign(0.047) TCGA-FS-A1ZQ-06 8 24257753 24257753 C T ADAMDEC1 Missense_Mutation p.P361L 0.28 tolerated(0.66) benign(0.016) TCGA-FS-A1ZQ-06 8 25343304 25343304 T C CDCA2 Silent p.F465F 0.32 TCGA-FS-A1ZQ-06 8 2836242 2836242 C T CSMD1 Missense_Mutation p.G2820R 0.23 probably_damaging(0.956) TCGA-FS-A1ZQ-06 8 3216769 3216769 G A CSMD1 Missense_Mutation p.S1070F 0.61 possibly_damaging(0.741) TCGA-FS-A1ZQ-06 8 3565998 3565998 T C CSMD1 Missense_Mutation p.E316G 0.10 possibly_damaging(0.81) TCGA-FS-A1ZQ-06 8 39496021 39496021 C T ADAM18 Missense_Mutation p.P289S 0.40 tolerated(0.26) possibly_damaging(0.6) TCGA-FS-A1ZQ-06 8 39624518 39624518 G T ADAM2 Nonsense_Mutation p.C452* 0.33 TCGA-FS-A1ZQ-06 8 39806781 39806781 C T IDO2 Silent p.L46L 0.44 TCGA-FS-A1ZQ-06 8 42294860 42294860 G A SLC20A2 Silent p.T390T 0.41 TCGA-FS-A1ZQ-06 8 42297144 42297144 G A SLC20A2 Missense_Mutation p.S253L 0.36 tolerated(0.06) possibly_damaging(0.792) TCGA-FS-A1ZQ-06 8 6302358 6302358 A G MCPH1 Missense_Mutation p.K372R 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-FS-A1ZQ-06 8 67039423 67039423 C T TRIM55 5'UTR 0.35 TCGA-FS-A1ZQ-06 8 67064740 67064740 A T TRIM55 Missense_Mutation p.N372Y 0.44 deleterious(0.02) benign(0.001) TCGA-FS-A1ZQ-06 8 6794346 6794346 C A DEFA4 Missense_Mutation p.G26C 0.30 tolerated(0.08) benign(0.105) TCGA-FS-A1ZQ-06 8 73848737 73848737 G A KCNB2 Missense_Mutation p.G383S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 8 77616580 77616580 C T ZFHX4 Missense_Mutation p.A86V 0.33 possibly_damaging(0.682) TCGA-FS-A1ZQ-06 8 85774565 85774565 C T RALYL Missense_Mutation p.P163S 0.22 tolerated(0.24) benign(0.064) TCGA-FS-A1ZQ-06 8 87439898 87439898 G A WWP1 Missense_Mutation p.R395K 0.31 deleterious(0) benign(0.002) TCGA-FS-A1ZQ-06 8 87616424 87616424 C T CNGB3 Missense_Mutation p.E560K 0.29 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZQ-06 9 103340465 103340465 C T MURC Missense_Mutation p.H14Y 0.67 deleterious(0.04) possibly_damaging(0.781) TCGA-FS-A1ZQ-06 9 104433273 104433273 C T GRIN3A Missense_Mutation p.G474E 0.56 deleterious(0) benign(0.128) TCGA-FS-A1ZQ-06 9 105767972 105767972 G A CYLC2 3'UTR 0.56 TCGA-FS-A1ZQ-06 9 107289416 107289416 G A OR13C4 Silent p.I25I 0.74 TCGA-FS-A1ZQ-06 9 115947059 115947059 G A FKBP15 Silent p.L508L 0.55 TCGA-FS-A1ZQ-06 9 116840465 116840465 A G AMBP Silent p.L9L 0.52 TCGA-FS-A1ZQ-06 9 130507374 130507374 G A SH2D3C Silent p.T423T 0.38 TCGA-FS-A1ZQ-06 9 130700160 130700160 C T DPM2 5'UTR 0.53 TCGA-FS-A1ZQ-06 9 131744825 131744825 C T NUP188 Intron 0.58 TCGA-FS-A1ZQ-06 9 132595788 132595788 G A C9orf78 Silent p.P68P 0.67 TCGA-FS-A1ZQ-06 9 136508583 136508583 G A DBH Missense_Mutation p.E265K 0.71 deleterious(0) probably_damaging(0.934) TCGA-FS-A1ZQ-06 9 139906452 139906452 G A ABCA2 Silent p.V1793V 0.79 TCGA-FS-A1ZQ-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.61 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 9 74526531 74526531 G A C9orf85 5'UTR 0.50 TCGA-FS-A1ZQ-06 9 78803520 78803520 C T PCSK5 Missense_Mutation p.S770F 0.64 deleterious(0.01) benign(0.24) TCGA-FS-A1ZQ-06 9 79325114 79325114 G A PRUNE2 Silent p.S692S 0.50 TCGA-FS-A1ZQ-06 9 93629429 93629429 G A SYK Missense_Mutation p.G288E 0.59 tolerated(0.22) benign(0.006) TCGA-FS-A1ZQ-06 X 111697979 111697979 C T ZCCHC16 Missense_Mutation p.S8L 0.81 deleterious(0.04) benign(0.001) TCGA-FS-A1ZQ-06 X 114141186 114141186 G A HTR2C Silent p.R195R 0.72 TCGA-FS-A1ZQ-06 X 130408600 130408600 C T IGSF1 Missense_Mutation p.D1247N 0.73 deleterious(0.02) benign(0.046) TCGA-FS-A1ZQ-06 X 138644029 138644029 C T F9 Silent p.F395F 0.82 TCGA-FS-A1ZQ-06 X 142803707 142803707 G A SPANXN2 Missense_Mutation p.S19F 0.71 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FS-A1ZQ-06 X 151869567 151869567 A G MAGEA6 Missense_Mutation p.D86G 0.75 tolerated(1) benign(0) TCGA-FS-A1ZQ-06 X 153697396 153697396 C T PLXNA3 Intron 0.88 TCGA-FS-A1ZQ-06 X 2406967 2406967 G A ZBED1 Silent p.F598F 0.49 TCGA-FS-A1ZQ-06 X 27839446 27839446 A G MAGEB10 Missense_Mutation p.K8R 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1ZQ-06 X 33357469 33357469 G A DMD 5'UTR 0.72 TCGA-FS-A1ZQ-06 X 34149264 34149264 C T FAM47A Missense_Mutation p.E378K 0.74 deleterious(0.04) probably_damaging(0.953) TCGA-FS-A1ZQ-06 X 35820308 35820308 G A MAGEB16 5'UTR 0.56 TCGA-FS-A1ZQ-06 X 51488475 51488475 C T GSPT2 Missense_Mutation p.R585C 0.76 deleterious(0.02) benign(0.299) TCGA-FS-A1ZQ-06 X 54497745 54497745 A T FGD1 Splice_Site p.X161_splice 0.10 TCGA-FS-A1ZQ-06 X 64139036 64139036 G A ZC4H2 Silent p.P149P 0.79 TCGA-FS-A1ZQ-06 X 65427071 65427071 C T HEPH Missense_Mutation p.L830F 0.70 tolerated(0.65) benign(0.048) TCGA-FS-A1ZQ-06 X 70356322 70356322 G A MED12 Silent p.L1739L 0.75 TCGA-FS-A1ZQ-06 X 73064337 73064337 G A XIST RNA 0.83 TCGA-FS-A1ZQ-06 X 84526624 84526624 A G ZNF711 Silent p.K692K 0.22 TCGA-FS-A1ZR-06 10 104594763 104594763 C T CYP17A1 Missense_Mutation p.E149K 0.49 deleterious(0.01) possibly_damaging(0.492) TCGA-FS-A1ZR-06 10 27687789 27687789 C T PTCHD3 Missense_Mutation p.D580N 0.76 tolerated(0.06) benign(0.064) TCGA-FS-A1ZR-06 11 118984576 118984576 C T C2CD2L Missense_Mutation p.L502F 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-FS-A1ZR-06 11 124253109 124253109 C T OR8B2 Missense_Mutation p.G44D 0.44 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-FS-A1ZR-06 11 1272382 1272382 C T MUC5B Silent p.L4758L 0.18 TCGA-FS-A1ZR-06 11 17452251 17452251 G A ABCC8 Intron 0.40 TCGA-FS-A1ZR-06 11 48347393 48347393 G A OR4C3 Missense_Mutation p.G301S 0.32 tolerated(0.07) possibly_damaging(0.904) TCGA-FS-A1ZR-06 11 4929452 4929452 C T OR51A7 Missense_Mutation p.L285F 0.36 deleterious(0.01) benign(0.35) TCGA-FS-A1ZR-06 11 5364611 5364611 C T OR51B5 Silent p.K48K 0.41 TCGA-FS-A1ZR-06 11 5444060 5444060 C T OR51Q1 Silent p.I210I 0.40 TCGA-FS-A1ZR-06 11 55321940 55321940 G A OR4C15 Missense_Mutation p.G53E 0.40 tolerated_low_confidence(1) benign(0) TCGA-FS-A1ZR-06 11 64507588 64507588 C T RASGRP2 Missense_Mutation p.G140E 0.29 tolerated(1) benign(0.001) TCGA-FS-A1ZR-06 11 92523143 92523143 G A FAT3 Missense_Mutation p.G1457D 0.38 benign(0.033) TCGA-FS-A1ZR-06 12 104078786 104078786 C T STAB2 Missense_Mutation p.S974L 0.40 tolerated(0.09) benign(0.137) TCGA-FS-A1ZR-06 12 125834771 125834771 G A TMEM132B Missense_Mutation p.V276M 0.39 tolerated(0.09) possibly_damaging(0.576) TCGA-FS-A1ZR-06 12 13715834 13715834 G A GRIN2B Silent p.I1446I 0.60 TCGA-FS-A1ZR-06 12 13716597 13716597 C T GRIN2B Missense_Mutation p.G1192E 0.45 tolerated(0.09) probably_damaging(0.999) TCGA-FS-A1ZR-06 12 18800921 18800921 G A PIK3C2G Missense_Mutation p.D1433N 0.39 tolerated(1) benign(0) TCGA-FS-A1ZR-06 12 50050213 50050213 G A FMNL3 Missense_Mutation p.L287F 0.38 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZR-06 12 53233687 53233687 C T KRT78 Missense_Mutation p.E377K 0.50 deleterious(0) possibly_damaging(0.558) TCGA-FS-A1ZR-06 12 57873182 57873182 G A ARHGAP9 Missense_Mutation p.S3F 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZR-06 13 24433031 24433031 G A MIPEP Silent p.P358P 0.49 TCGA-FS-A1ZR-06 13 42763258 42763258 C T DGKH Silent p.S575S 0.35 TCGA-FS-A1ZR-06 14 101412024 101412024 G A SNORD113-9 RNA 0.60 TCGA-FS-A1ZR-06 14 21486621 21486621 G A NDRG2 Missense_Mutation p.L286F 0.38 deleterious(0.02) probably_damaging(0.929) TCGA-FS-A1ZR-06 14 23874580 23874580 C A MYH6 Silent p.S118S 0.19 TCGA-FS-A1ZR-06 14 51224286 51224286 G A NIN Silent p.D1154D 0.27 TCGA-FS-A1ZR-06 15 43340622 43340622 G A UBR1 Nonsense_Mutation p.R503* 0.41 TCGA-FS-A1ZR-06 15 48719891 48719891 G T FBN1 Silent p.T2359T 0.46 TCGA-FS-A1ZR-06 15 48719895 48719895 A C FBN1 Missense_Mutation p.V2358G 0.49 probably_damaging(0.999) TCGA-FS-A1ZR-06 15 53889401 53889401 G A WDR72 Missense_Mutation p.P1008L 0.37 deleterious(0.01) benign(0.005) TCGA-FS-A1ZR-06 15 54305180 54305180 G A UNC13C Missense_Mutation p.G27E 0.42 tolerated_low_confidence(0.09) probably_damaging(0.92) TCGA-FS-A1ZR-06 15 72191230 72191230 G A MYO9A Missense_Mutation p.A1205V 0.41 tolerated_low_confidence(0.06) benign(0.334) TCGA-FS-A1ZR-06 15 74425238 74425238 G A ISLR2 Missense_Mutation p.G48E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZR-06 15 84553961 84553961 G A ADAMTSL3 Missense_Mutation p.G357R 0.35 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZR-06 15 90378847 90378847 G A C15orf38-AP3S2 Missense_Mutation p.A362V 0.31 tolerated_low_confidence(0.09) benign(0.066) TCGA-FS-A1ZR-06 16 20498051 20498051 C T ACSM2A 3'UTR 0.39 TCGA-FS-A1ZR-06 16 20566767 20566767 C T ACSM2B Missense_Mutation p.M140I 0.34 deleterious(0) possibly_damaging(0.743) TCGA-FS-A1ZR-06 16 30510810 30510810 G A ITGAL Silent p.P715P 0.35 TCGA-FS-A1ZR-06 16 30666248 30666248 C T PRR14 Silent p.T319T 0.26 TCGA-FS-A1ZR-06 16 30666249 30666249 C T PRR14 Missense_Mutation p.P320S 0.21 tolerated(0.08) benign(0.006) TCGA-FS-A1ZR-06 16 51174059 51174059 G A SALL1 Nonsense_Mutation p.Q692* 0.38 TCGA-FS-A1ZR-06 16 70311047 70311047 A G AARS Missense_Mutation p.I52T 0.47 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZR-06 16 70843823 70843823 G A HYDIN Nonsense_Mutation p.Q4916* 0.35 TCGA-FS-A1ZR-06 16 75140409 75140409 G T ZNRF1 Missense_Mutation p.R219I 0.37 deleterious(0) possibly_damaging(0.474) TCGA-FS-A1ZR-06 17 10408747 10408747 G A MYH1 Silent p.S752S 0.44 TCGA-FS-A1ZR-06 17 40705284 40705284 G A HSD17B1 Silent p.V80V 0.39 TCGA-FS-A1ZR-06 17 48734526 48734526 C T ABCC3 Silent p.I156I 0.40 TCGA-FS-A1ZR-06 17 59560724 59560724 C A TBX4 Silent p.R495R 0.14 TCGA-FS-A1ZR-06 17 65735061 65735061 C T NOL11 Missense_Mutation p.H593Y 0.35 tolerated(0.47) possibly_damaging(0.548) TCGA-FS-A1ZR-06 17 66981056 66981056 C T ABCA9 Missense_Mutation p.G1450E 0.35 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZR-06 17 74015056 74015056 C T EVPL Missense_Mutation p.R408Q 0.42 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZR-06 17 7679380 7679380 C T DNAH2 Silent p.T1620T 0.42 TCGA-FS-A1ZR-06 17 79852353 79852353 C T ANAPC11 5'UTR 0.32 TCGA-FS-A1ZR-06 18 28604330 28604330 C T DSC3 Missense_Mutation p.E254K 0.30 deleterious(0.04) probably_damaging(0.949) TCGA-FS-A1ZR-06 18 45423101 45423101 C A SMAD2 Silent p.P9P 0.44 TCGA-FS-A1ZR-06 19 15132664 15132664 G A CCDC105 Missense_Mutation p.R395K 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZR-06 19 1789630 1789630 C T ATP8B3 Missense_Mutation p.D859N 0.50 tolerated(0.16) benign(0.022) TCGA-FS-A1ZR-06 19 18507224 18507224 G A LRRC25 Missense_Mutation p.P184S 0.26 tolerated(1) probably_damaging(0.959) TCGA-FS-A1ZR-06 19 35741388 35741388 C T LSR Missense_Mutation p.P142S 0.33 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A1ZR-06 19 38985160 38985160 C T RYR1 Missense_Mutation p.S2148F 0.45 benign(0.061) TCGA-FS-A1ZR-06 19 39760175 39760175 G A IFNL2 Silent p.L106L 0.36 TCGA-FS-A1ZR-06 19 3982420 3982420 G A EEF2 Silent p.I205I 0.38 TCGA-FS-A1ZR-06 19 42342212 42342212 G A LYPD4 Missense_Mutation p.S112F 0.37 deleterious(0.03) benign(0.346) TCGA-FS-A1ZR-06 19 42752554 42752554 G A ERF 3'UTR 0.36 TCGA-FS-A1ZR-06 19 43237057 43237057 G A PSG3 Silent p.S196S 0.39 TCGA-FS-A1ZR-06 19 43576013 43576013 G A PSG2 Missense_Mutation p.P268L 0.77 tolerated(0.07) benign(0.014) TCGA-FS-A1ZR-06 19 48533771 48533771 C T CABP5 3'UTR 0.48 TCGA-FS-A1ZR-06 19 49217244 49217244 C T MAMSTR Missense_Mutation p.G261E 0.39 tolerated(0.49) probably_damaging(0.931) TCGA-FS-A1ZR-06 19 54080114 54080114 C T ZNF331 Silent p.V100V 0.38 TCGA-FS-A1ZR-06 19 54967563 54967563 G A LENG8 Missense_Mutation p.R455H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZR-06 19 55449588 55449588 C T NLRP7 Silent p.P651P 0.25 TCGA-FS-A1ZR-06 19 56539052 56539052 G A NLRP5 Missense_Mutation p.D485N 0.21 tolerated(0.19) benign(0.093) TCGA-FS-A1ZR-06 19 57328917 57328917 G A PEG3 Missense_Mutation p.S298L 0.41 deleterious(0.03) benign(0.03) TCGA-FS-A1ZR-06 19 57867735 57867735 C T ZNF304 Silent p.S166S 0.24 TCGA-FS-A1ZR-06 19 6185474 6185474 G A ACSBG2 Silent p.K450K 0.41 TCGA-FS-A1ZR-06 19 9089934 9089934 G A MUC16 Silent p.L627L 0.42 TCGA-FS-A1ZR-06 1 118514483 118514483 C T SPAG17 Intron 0.32 TCGA-FS-A1ZR-06 1 152192762 152192762 C T HRNR Missense_Mutation p.R448Q 0.35 unknown(0) TCGA-FS-A1ZR-06 1 152382958 152382958 C T CRNN Silent p.R200R 0.36 TCGA-FS-A1ZR-06 1 158576831 158576831 C T OR10Z1 Silent p.I201I 0.40 TCGA-FS-A1ZR-06 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.39 tolerated(0.38) benign(0.101) TCGA-FS-A1ZR-06 1 160011861 160011861 G A KCNJ10 Silent p.T154T 0.49 TCGA-FS-A1ZR-06 1 161677088 161677088 C T FCRLA Missense_Mutation p.L29F 0.36 tolerated(0.48) benign(0.008) TCGA-FS-A1ZR-06 1 171501488 171501488 C T PRRC2C Missense_Mutation p.P419S 0.08 unknown(0) TCGA-FS-A1ZR-06 1 196857218 196857218 A G CFHR4 5'UTR 0.33 TCGA-FS-A1ZR-06 1 197097757 197097757 G A ASPM Silent p.F933F 0.44 TCGA-FS-A1ZR-06 1 215914870 215914870 C T USH2A Missense_Mutation p.G3853E 0.32 probably_damaging(0.999) TCGA-FS-A1ZR-06 1 220153506 220153506 G A EPRS Missense_Mutation p.T1211M 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZR-06 1 226074761 226074761 G A LEFTY1 Missense_Mutation p.P256L 0.47 tolerated(0.06) possibly_damaging(0.469) TCGA-FS-A1ZR-06 1 248059074 248059074 C T OR2W3 Silent p.F62F 0.35 TCGA-FS-A1ZR-06 1 248202216 248202216 C T OR2L2 Missense_Mutation p.S216F 0.33 deleterious(0) possibly_damaging(0.816) TCGA-FS-A1ZR-06 1 248343804 248343804 G A OR2M2 Missense_Mutation p.E173K 0.31 tolerated(0.16) benign(0.119) TCGA-FS-A1ZR-06 1 3551763 3551763 G A WRAP73 Silent p.P233P 0.41 TCGA-FS-A1ZR-06 1 42046221 42046221 C T HIVEP3 Silent p.L1416L 0.38 TCGA-FS-A1ZR-06 1 43777681 43777681 C T TIE1 Silent p.N503N 0.25 TCGA-FS-A1ZR-06 1 45292179 45292179 G A PTCH2 Missense_Mutation p.P986L 0.44 tolerated(0.34) benign(0.145) TCGA-FS-A1ZR-06 1 67635191 67635191 G A IL23R Silent p.R79R 0.35 TCGA-FS-A1ZR-06 1 75172593 75172593 G A CRYZ Missense_Mutation p.S273F 0.40 tolerated(0.74) benign(0.022) TCGA-FS-A1ZR-06 20 39831821 39831821 G A ZHX3 Missense_Mutation p.S579L 0.35 tolerated(0.31) benign(0.001) TCGA-FS-A1ZR-06 20 61828001 61828001 A G YTHDF1 3'UTR 0.47 TCGA-FS-A1ZR-06 22 23214075 23214075 G A IGLV4-3 Missense_Mutation p.G78R 0.24 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZR-06 22 24829686 24829686 C T ADORA2A Missense_Mutation p.A105V 0.23 tolerated(0.06) probably_damaging(0.925) TCGA-FS-A1ZR-06 22 31533863 31533863 G A PLA2G3 Missense_Mutation p.P300L 0.35 deleterious(0.03) benign(0.05) TCGA-FS-A1ZR-06 22 31533864 31533864 G A PLA2G3 Missense_Mutation p.P300S 0.35 tolerated(0.9) benign(0.002) TCGA-FS-A1ZR-06 22 31741169 31741169 G A PATZ1 Silent p.A140A 0.36 TCGA-FS-A1ZR-06 22 36876791 36876791 G A TXN2 Silent p.L32L 0.37 TCGA-FS-A1ZR-06 22 37334241 37334241 G A CSF2RB Silent p.G797G 0.48 TCGA-FS-A1ZR-06 22 38524320 38524320 G A PLA2G6 Missense_Mutation p.S435F 0.32 tolerated(0.61) benign(0.004) TCGA-FS-A1ZR-06 22 42377818 42377818 C T SEPT3 Silent p.F60F 0.31 TCGA-FS-A1ZR-06 22 44579248 44579248 C A PARVG Silent p.P13P 0.14 TCGA-FS-A1ZR-06 2 113147742 113147742 G A RGPD8 Missense_Mutation p.S927L 0.26 deleterious(0.04) benign(0.001) TCGA-FS-A1ZR-06 2 113763452 113763452 G A IL36A Missense_Mutation p.E2K 0.35 tolerated(0.57) benign(0.001) TCGA-FS-A1ZR-06 2 119752105 119752105 C T MARCO 3'UTR 0.26 TCGA-FS-A1ZR-06 2 179422801 179422801 C T TTN Missense_Mutation p.E29094K 0.24 TCGA-FS-A1ZR-06 2 179485585 179485585 G A TTN Missense_Mutation p.S15251L 0.47 TCGA-FS-A1ZR-06 2 189957035 189957035 C T COL5A2 Splice_Site p.X189_splice 0.62 TCGA-FS-A1ZR-06 2 196709789 196709789 C T DNAH7 Missense_Mutation p.R2961Q 0.42 tolerated(0.06) possibly_damaging(0.864) TCGA-FS-A1ZR-06 2 197208396 197208396 G A HECW2 Missense_Mutation p.P129S 0.43 tolerated(0.45) probably_damaging(0.993) TCGA-FS-A1ZR-06 2 219131205 219131205 G A AAMP Missense_Mutation p.P214S 0.39 tolerated(0.42) benign(0.178) TCGA-FS-A1ZR-06 2 219299365 219299365 C T VIL1 Silent p.F539F 0.27 TCGA-FS-A1ZR-06 2 230632248 230632248 G A TRIP12 3'UTR 0.43 TCGA-FS-A1ZR-06 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.44 tolerated(0.85) benign(0.005) TCGA-FS-A1ZR-06 2 56419668 56419668 C T CCDC85A Silent p.F111F 0.40 TCGA-FS-A1ZR-06 2 72802710 72802710 T A EXOC6B Missense_Mutation p.I253F 0.42 tolerated(0.36) benign(0) TCGA-FS-A1ZR-06 3 100527030 100527030 G A ABI3BP Silent p.R549R 0.30 TCGA-FS-A1ZR-06 3 123457789 123457789 G A MYLK Silent p.S181S 0.43 TCGA-FS-A1ZR-06 3 189681802 189681802 C T LEPREL1 Missense_Mutation p.G660E 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZR-06 3 189681803 189681803 C T LEPREL1 Missense_Mutation p.G660R 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZR-06 3 38592525 38592525 C T SCN5A Missense_Mutation p.E1780K 0.33 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZR-06 3 40553021 40553021 G A ZNF620 Missense_Mutation p.D29N 0.38 tolerated(0.23) probably_damaging(0.97) TCGA-FS-A1ZR-06 3 42226209 42226209 C T TRAK1 Silent p.I132I 0.39 TCGA-FS-A1ZR-06 3 42660522 42660522 C T NKTR Silent p.G48G 0.42 TCGA-FS-A1ZR-06 3 47155463 47155463 A G SETD2 Missense_Mutation p.S1540P 0.23 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZR-06 3 58923433 58923433 C T C3orf67 5'UTR 0.44 TCGA-FS-A1ZR-06 4 100137326 100137326 G A ADH6 Missense_Mutation p.R38C 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZR-06 4 126336923 126336923 C T FAT4 Missense_Mutation p.P2269S 0.33 benign(0.403) TCGA-FS-A1ZR-06 4 169227844 169227844 G A DDX60 Missense_Mutation p.P98S 0.45 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZR-06 4 183245230 183245230 G A TENM3 Silent p.K19K 0.24 TCGA-FS-A1ZR-06 4 47163300 47163300 G A GABRB1 Nonsense_Mutation p.W92* 0.31 TCGA-FS-A1ZR-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.42 tolerated(0.48) benign(0.199) TCGA-FS-A1ZR-06 4 94032039 94032039 C T GRID2 Nonsense_Mutation p.R224* 0.38 TCGA-FS-A1ZR-06 4 94316831 94316831 G A GRID2 Missense_Mutation p.G440E 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-FS-A1ZR-06 5 140216016 140216016 C T PCDHA7 Missense_Mutation p.S683L 0.42 tolerated_low_confidence(0.81) benign(0.003) TCGA-FS-A1ZR-06 5 140432780 140432780 C T PCDHB1 Silent p.D575D 0.15 TCGA-FS-A1ZR-06 5 140503831 140503831 G A PCDHB4 Missense_Mutation p.E751K 0.40 deleterious_low_confidence(0.02) benign(0.052) TCGA-FS-A1ZR-06 5 140515278 140515278 G A PCDHB5 Missense_Mutation p.E88K 0.40 deleterious_low_confidence(0.03) benign(0.345) TCGA-FS-A1ZR-06 5 140711066 140711066 G A PCDHGA1 Missense_Mutation p.G272E 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A1ZR-06 5 140865726 140865726 C T PCDHGC4 Missense_Mutation p.A329V 0.23 tolerated(0.12) possibly_damaging(0.824) TCGA-FS-A1ZR-06 5 156670656 156670656 G A ITK Missense_Mutation p.E362K 0.39 deleterious(0) probably_damaging(0.923) TCGA-FS-A1ZR-06 5 19483630 19483630 C T CDH18 Silent p.R554R 0.43 TCGA-FS-A1ZR-06 5 41160404 41160404 C T C6 Silent p.R508R 0.34 TCGA-FS-A1ZR-06 5 55155392 55155392 G A IL31RA Nonsense_Mutation p.W40* 0.45 TCGA-FS-A1ZR-06 5 98229193 98229193 G A CHD1 Missense_Mutation p.L640F 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZR-06 6 129636925 129636925 A G LAMA2 Missense_Mutation p.K1252E 0.72 deleterious(0.01) possibly_damaging(0.626) TCGA-FS-A1ZR-06 6 41254361 41254361 C T TREM1 Nonsense_Mutation p.W11* 0.17 TCGA-FS-A1ZR-06 6 4996556 4996556 G A RPP40 Missense_Mutation p.P220S 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZR-06 6 53010477 53010477 G A GCM1 5'UTR 0.24 TCGA-FS-A1ZR-06 6 7583574 7583574 G A DSP Missense_Mutation p.E2027K 0.54 benign(0.016) TCGA-FS-A1ZR-06 7 111381658 111381658 C A DOCK4 Silent p.V1610V 0.72 TCGA-FS-A1ZR-06 7 120446649 120446649 C T TSPAN12 Missense_Mutation p.C189Y 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZR-06 7 126173396 126173396 C T GRM8 Silent p.G680G 0.61 TCGA-FS-A1ZR-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.61 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZR-06 7 141719069 141719069 C T MGAM Missense_Mutation p.S133F 0.67 deleterious(0) possibly_damaging(0.741) TCGA-FS-A1ZR-06 7 150269283 150269283 G A GIMAP4 Missense_Mutation p.G42E 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZR-06 7 157959833 157959833 C T PTPRN2 Missense_Mutation p.D234N 0.70 tolerated(0.06) benign(0.383) TCGA-FS-A1ZR-06 7 27147508 27147508 C T HOXA3 3'UTR 0.13 TCGA-FS-A1ZR-06 7 4213962 4213962 C T SDK1 Missense_Mutation p.P1637S 0.21 tolerated(0.05) benign(0.06) TCGA-FS-A1ZR-06 7 82545193 82545193 C T PCLO Missense_Mutation p.D4037N 0.17 unknown(0) TCGA-FS-A1ZR-06 8 125570989 125570989 C T MTSS1 Intron 0.31 TCGA-FS-A1ZR-06 8 141231633 141231633 G A TRAPPC9 Silent p.V925V 0.60 TCGA-FS-A1ZR-06 8 145740779 145740779 G A RECQL4 Missense_Mutation p.P441S 0.21 tolerated(0.41) benign(0.044) TCGA-FS-A1ZR-06 8 19221586 19221586 G A SH2D4A Missense_Mutation p.R237Q 0.49 tolerated(0.18) benign(0.104) TCGA-FS-A1ZR-06 8 22865022 22865022 C T RHOBTB2 Nonsense_Mutation p.Q444* 0.20 TCGA-FS-A1ZR-06 8 41550337 41550337 C T ANK1 Silent p.L1270L 0.30 TCGA-FS-A1ZR-06 8 93023292 93023292 G A RUNX1T1 Missense_Mutation p.H177Y 0.53 deleterious(0) probably_damaging(0.951) TCGA-FS-A1ZR-06 9 115759834 115759834 G A ZNF883 RNA 0.73 TCGA-FS-A1ZR-06 9 27950117 27950117 C T LINGO2 Missense_Mutation p.E185K 0.58 deleterious(0) probably_damaging(0.959) TCGA-FS-A1ZR-06 9 3879532 3879532 G T GLIS3 Missense_Mutation p.P731Q 0.71 deleterious(0.01) probably_damaging(0.981) TCGA-FS-A1ZR-06 9 6328770 6328770 G A TPD52L3 Missense_Mutation p.E59K 0.63 deleterious(0.02) benign(0.142) TCGA-FS-A1ZR-06 9 88577022 88577022 C T NAA35 Missense_Mutation p.A148V 0.57 deleterious(0.01) possibly_damaging(0.734) TCGA-FS-A1ZR-06 X 117805075 117805075 C T DOCK11 Silent p.I1722I 0.85 TCGA-FS-A1ZR-06 X 123518420 123518420 C T TENM1 Missense_Mutation p.E2121K 0.80 deleterious(0.04) possibly_damaging(0.767) TCGA-FS-A1ZR-06 X 134947909 134947909 C T CT45A5 Missense_Mutation p.R139Q 0.76 tolerated(0.27) benign(0.002) TCGA-FS-A1ZR-06 X 139866084 139866084 T A CDR1 Nonsense_Mutation p.R150* 0.76 TCGA-FS-A1ZR-06 X 153071017 153071017 G A PDZD4 Silent p.I198I 0.69 TCGA-FS-A1ZR-06 X 75651013 75651013 A G MAGEE1 Missense_Mutation p.Y897C 0.85 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZS-06 10 112724208 112724208 C T SHOC2 Missense_Mutation p.S31F 0.80 tolerated(0.16) benign(0.049) TCGA-FS-A1ZS-06 10 113926232 113926232 T G GPAM Missense_Mutation p.R383S 0.85 tolerated(0.17) benign(0.276) TCGA-FS-A1ZS-06 10 127414358 127414358 C T EDRF1 Missense_Mutation p.P248L 0.91 deleterious(0) possibly_damaging(0.625) TCGA-FS-A1ZS-06 10 128973855 128973855 C T FAM196A Missense_Mutation p.G269S 0.16 tolerated(0.85) benign(0.01) TCGA-FS-A1ZS-06 10 21185923 21185923 C T NEBL Missense_Mutation p.M39I 0.81 tolerated(0.11) benign(0.021) TCGA-FS-A1ZS-06 10 25886921 25886921 G A GPR158 Missense_Mutation p.R789K 0.86 tolerated(0.51) benign(0.003) TCGA-FS-A1ZS-06 10 26385322 26385322 T A MYO3A Missense_Mutation p.N525K 0.41 deleterious(0.01) possibly_damaging(0.798) TCGA-FS-A1ZS-06 10 37419246 37419246 G C ANKRD30A Missense_Mutation p.E94D 0.24 deleterious(0.05) possibly_damaging(0.637) TCGA-FS-A1ZS-06 10 43293981 43293981 A G BMS1 Missense_Mutation p.N719D 0.84 deleterious(0.04) benign(0.021) TCGA-FS-A1ZS-06 10 50724534 50724534 A G ERCC6-PGBD3 Silent p.H677H 0.86 TCGA-FS-A1ZS-06 10 95347060 95347060 C G FFAR4 Missense_Mutation p.F276L 0.88 deleterious(0.03) benign(0.043) TCGA-FS-A1ZS-06 10 95372407 95372407 C T PDE6C 5'UTR 0.88 TCGA-FS-A1ZS-06 10 96612508 96612508 G A CYP2C19 Missense_Mutation p.G437E 0.72 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZS-06 11 101375213 101375213 C T TRPC6 Missense_Mutation p.D163N 0.43 tolerated(0.19) probably_damaging(0.999) TCGA-FS-A1ZS-06 11 111784565 111784565 C T HSPB2 Silent p.L165L 0.39 TCGA-FS-A1ZS-06 11 111784566 111784566 C T HSPB2 Missense_Mutation p.P166S 0.39 tolerated(0.13) unknown(0) TCGA-FS-A1ZS-06 11 118363900 118363900 A G KMT2A Silent p.L1711L 0.53 TCGA-FS-A1ZS-06 11 118372446 118372446 C T KMT2A Nonsense_Mutation p.R2127* 0.33 TCGA-FS-A1ZS-06 11 118850239 118850239 C T FOXR1 Missense_Mutation p.R158W 0.39 tolerated(0.09) benign(0.022) TCGA-FS-A1ZS-06 11 124266550 124266550 C T OR8B3 Missense_Mutation p.G233E 0.49 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A1ZS-06 11 126073509 126073509 G A RPUSD4 Missense_Mutation p.S313L 0.31 deleterious(0) possibly_damaging(0.477) TCGA-FS-A1ZS-06 11 132306020 132306020 C T OPCML Silent p.T299T 0.57 TCGA-FS-A1ZS-06 11 18735421 18735421 G A IGSF22 Silent p.A691A 0.38 TCGA-FS-A1ZS-06 11 18955425 18955425 C T MRGPRX1 Missense_Mutation p.E303K 0.34 tolerated(0.11) benign(0.013) TCGA-FS-A1ZS-06 11 22294508 22294508 A T ANO5 Silent p.G736G 0.50 TCGA-FS-A1ZS-06 11 26743063 26743063 C A SLC5A12 Missense_Mutation p.V67F 0.54 deleterious(0) probably_damaging(0.958) TCGA-FS-A1ZS-06 11 26743064 26743064 C T SLC5A12 Silent p.T66T 0.55 TCGA-FS-A1ZS-06 11 27016325 27016325 C T FIBIN Silent p.F84F 0.32 TCGA-FS-A1ZS-06 11 3797137 3797137 G A NUP98 Missense_Mutation p.P157L 0.57 deleterious(0.04) benign(0.034) TCGA-FS-A1ZS-06 11 3797138 3797138 G A NUP98 Missense_Mutation p.P157S 0.57 tolerated(0.06) possibly_damaging(0.882) TCGA-FS-A1ZS-06 11 40137423 40137423 C T LRRC4C Silent p.P140P 0.22 TCGA-FS-A1ZS-06 11 4510460 4510460 C T OR52K1 Silent p.S110S 0.51 TCGA-FS-A1ZS-06 11 46400584 46400584 A G DGKZ Missense_Mutation p.D1009G 0.59 tolerated(0.1) probably_damaging(0.942) TCGA-FS-A1ZS-06 11 4703277 4703277 C T OR51E2 Missense_Mutation p.R222Q 0.46 tolerated(0.14) benign(0.017) TCGA-FS-A1ZS-06 11 4928635 4928635 C T OR51A7 Silent p.F12F 0.33 TCGA-FS-A1ZS-06 11 55418383 55418383 G A OR4S2 Missense_Mutation p.E2K 0.34 tolerated(0.18) benign(0.005) TCGA-FS-A1ZS-06 11 55563503 55563503 C T OR5D14 Missense_Mutation p.P158S 0.31 tolerated(1) benign(0.002) TCGA-FS-A1ZS-06 11 57958776 57958776 C T OR9Q2 Nonsense_Mutation p.R272* 0.35 TCGA-FS-A1ZS-06 11 58170180 58170180 G A OR5B3 Missense_Mutation p.P235S 0.31 deleterious_low_confidence(0) benign(0.008) TCGA-FS-A1ZS-06 11 58722674 58722674 G A GLYATL1 Silent p.G144G 0.36 TCGA-FS-A1ZS-06 11 6129257 6129257 C T OR56B4 Silent p.I83I 0.46 TCGA-FS-A1ZS-06 11 61539203 61539203 G A MYRF Silent p.P324P 0.17 TCGA-FS-A1ZS-06 11 6191344 6191344 C T OR52B2 Missense_Mutation p.M71I 0.48 tolerated(0.16) benign(0.005) TCGA-FS-A1ZS-06 11 62997100 62997100 G A SLC22A25 Nonsense_Mutation p.Q9* 0.29 TCGA-FS-A1ZS-06 11 64854200 64854200 G A ZFPL1 Silent p.E139E 0.40 TCGA-FS-A1ZS-06 11 65824394 65824394 A G SF3B2 Missense_Mutation p.Q212R 0.36 tolerated_low_confidence(0.43) benign(0.02) TCGA-FS-A1ZS-06 11 71941854 71941854 C T INPPL1 Silent p.F404F 0.42 TCGA-FS-A1ZS-06 11 73372774 73372774 G A PLEKHB1 3'UTR 0.33 TCGA-FS-A1ZS-06 11 77583364 77583364 G A AAMDC 3'UTR 0.33 TCGA-FS-A1ZS-06 11 85436334 85436334 A C SYTL2 Missense_Mutation p.V389G 0.34 deleterious(0) benign(0.382) TCGA-FS-A1ZS-06 11 9321194 9321194 G A TMEM41B Missense_Mutation p.S59F 0.49 tolerated(0.66) benign(0.001) TCGA-FS-A1ZS-06 11 93528151 93528151 C T MED17 Missense_Mutation p.R313W 0.55 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZS-06 11 9771499 9771499 G A SWAP70 Silent p.E580E 0.54 TCGA-FS-A1ZS-06 12 10862627 10862627 C T YBX3 Silent p.R220R 0.28 TCGA-FS-A1ZS-06 12 10958879 10958879 A T TAS2R8 Missense_Mutation p.I234N 0.64 deleterious(0) possibly_damaging(0.889) TCGA-FS-A1ZS-06 12 110240830 110240830 G A TRPV4 Silent p.F226F 0.65 TCGA-FS-A1ZS-06 12 110841400 110841400 C G ANAPC7 Silent p.A45A 0.26 TCGA-FS-A1ZS-06 12 123489905 123489905 G A PITPNM2 Silent p.D278D 0.63 TCGA-FS-A1ZS-06 12 126068397 126068397 G C TMEM132B Missense_Mutation p.D427H 0.04 deleterious(0.01) probably_damaging(0.972) TCGA-FS-A1ZS-06 12 14577971 14577973 TAT - ATF7IP In_Frame_Del p.I376del 0.25 TCGA-FS-A1ZS-06 12 18691147 18691147 G A PIK3C2G Silent p.G1086G 0.23 TCGA-FS-A1ZS-06 12 21015416 21015416 G A SLCO1B3 Silent p.G184G 0.26 TCGA-FS-A1ZS-06 12 38715009 38715009 G A ALG10B Missense_Mutation p.M472I 0.65 deleterious(0.05) possibly_damaging(0.742) TCGA-FS-A1ZS-06 12 432368 432368 G A KDM5A Missense_Mutation p.R719C 0.21 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZS-06 12 43826519 43826519 C A ADAMTS20 Missense_Mutation p.G939V 0.24 deleterious(0.02) probably_damaging(0.984) TCGA-FS-A1ZS-06 12 4737278 4737278 C T AKAP3 Missense_Mutation p.E264K 0.18 deleterious(0.03) possibly_damaging(0.859) TCGA-FS-A1ZS-06 12 50062307 50062307 G A FMNL3 Missense_Mutation p.R53W 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZS-06 12 50062308 50062308 G A FMNL3 Silent p.A52A 0.22 TCGA-FS-A1ZS-06 12 52370345 52370345 C T ACVR1B Missense_Mutation p.S189L 0.52 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZS-06 12 52946764 52946764 C T KRT71 Missense_Mutation p.R33Q 0.22 tolerated(0.12) benign(0.007) TCGA-FS-A1ZS-06 12 54966496 54966496 C T PDE1B Missense_Mutation p.H236Y 0.59 deleterious(0) possibly_damaging(0.861) TCGA-FS-A1ZS-06 12 55420514 55420514 G A NEUROD4 Silent p.R97R 0.16 TCGA-FS-A1ZS-06 12 55641850 55641850 C T OR6C74 Missense_Mutation p.P260L 0.52 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-FS-A1ZS-06 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.55 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-FS-A1ZS-06 12 55945095 55945095 C T OR6C4 Silent p.L29L 0.64 TCGA-FS-A1ZS-06 12 7882228 7882228 C T CLEC4C Silent p.Q202Q 0.59 TCGA-FS-A1ZS-06 12 88376883 88376883 G A C12orf50 Missense_Mutation p.P406S 0.64 tolerated(0.75) benign(0.009) TCGA-FS-A1ZS-06 12 8998726 8998726 G A A2ML1 Missense_Mutation p.D531N 0.55 tolerated(0.3) benign(0.033) TCGA-FS-A1ZS-06 13 23910492 23910492 C T SACS Missense_Mutation p.R2508K 0.20 probably_damaging(0.983) TCGA-FS-A1ZS-06 13 25276115 25276115 A C ATP12A Missense_Mutation p.I648L 0.58 deleterious(0.01) benign(0.433) TCGA-FS-A1ZS-06 13 29599560 29599560 G A MTUS2 Missense_Mutation p.R252H 0.60 tolerated(0.62) benign(0.001) TCGA-FS-A1ZS-06 13 31036680 31036680 C T HMGB1 Missense_Mutation p.E156K 0.06 tolerated(0.17) benign(0.08) TCGA-FS-A1ZS-06 13 37679106 37679106 G A CSNK1A1L Silent p.S96S 0.26 TCGA-FS-A1ZS-06 13 52548946 52548946 G A ATP7B Missense_Mutation p.S137F 0.72 deleterious(0.05) benign(0.005) TCGA-FS-A1ZS-06 13 84453942 84453942 C T SLITRK1 Silent p.K567K 0.16 TCGA-FS-A1ZS-06 13 99127125 99127125 G A STK24 Missense_Mutation p.P195S 0.66 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZS-06 14 105413481 105413481 G A AHNAK2 Silent p.A2769A 0.62 TCGA-FS-A1ZS-06 14 106405666 106405666 G A IGHV6-1 Missense_Mutation p.S103F 0.69 tolerated(0.16) possibly_damaging(0.739) TCGA-FS-A1ZS-06 14 106780678 106780678 C T IGHV4-28 Silent p.G62G 0.15 TCGA-FS-A1ZS-06 14 23393227 23393227 G A PRMT5 Silent p.H455H 0.18 TCGA-FS-A1ZS-06 14 59113645 59113645 G A DACT1 Silent p.G768G 0.60 TCGA-FS-A1ZS-06 14 69704552 69704552 A T EXD2 Missense_Mutation p.Q518L 0.70 tolerated(0.32) benign(0) TCGA-FS-A1ZS-06 14 70634966 70634966 G A SLC8A3 Silent p.V58V 0.63 TCGA-FS-A1ZS-06 14 72936746 72936746 C T RGS6 Missense_Mutation p.A164V 0.10 deleterious(0.02) benign(0.154) TCGA-FS-A1ZS-06 14 73731022 73731022 A C PAPLN Missense_Mutation p.K962Q 0.57 tolerated(0.92) benign(0.071) TCGA-FS-A1ZS-06 14 75365133 75365133 C T DLST Silent p.L278L 0.23 TCGA-FS-A1ZS-06 14 94063707 94063707 G A UNC79 Missense_Mutation p.E888K 0.09 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZS-06 14 94844815 94844815 C T SERPINA1 Missense_Mutation p.G410R 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A1ZS-06 14 96136873 96136873 C T TCL6 RNA 0.26 TCGA-FS-A1ZS-06 15 20588503 20588503 G A HERC2P3 RNA 0.14 TCGA-FS-A1ZS-06 15 22368906 22368906 G A OR4M2 Missense_Mutation p.E111K 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A1ZS-06 15 22473102 22473102 C A IGHV4OR15-8 Missense_Mutation p.V57F 0.24 deleterious(0.05) benign(0.048) TCGA-FS-A1ZS-06 15 24923342 24923342 C T NPAP1 Silent p.A776A 0.38 TCGA-FS-A1ZS-06 15 34168175 34168175 C T AVEN Missense_Mutation p.R156Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZS-06 15 48052082 48052082 C T SEMA6D Silent p.P29P 0.34 TCGA-FS-A1ZS-06 15 48052083 48052083 C T SEMA6D Missense_Mutation p.L30F 0.35 deleterious(0) possibly_damaging(0.493) TCGA-FS-A1ZS-06 15 57925928 57925928 C T GCOM1 Missense_Mutation p.R308C 0.52 tolerated(0.13) benign(0.049) TCGA-FS-A1ZS-06 15 64332401 64332401 C T DAPK2 Silent p.E20E 0.31 TCGA-FS-A1ZS-06 15 65756209 65756209 A C DPP8 Missense_Mutation p.S637A 0.46 tolerated(0.2) probably_damaging(0.977) TCGA-FS-A1ZS-06 15 87531290 87531290 C T AGBL1 Silent p.F1052F 0.33 TCGA-FS-A1ZS-06 15 89698640 89698640 G A ABHD2 Missense_Mutation p.S138N 0.44 tolerated(0.05) possibly_damaging(0.476) TCGA-FS-A1ZS-06 15 99500369 99500369 G A IGF1R Missense_Mutation p.E1268K 0.41 tolerated(0.1) benign(0.014) TCGA-FS-A1ZS-06 16 11362754 11362754 G A TNP2 Silent p.I122I 0.43 TCGA-FS-A1ZS-06 16 15831463 15831463 C T MYH11 Missense_Mutation p.E1053K 0.33 benign(0.395) TCGA-FS-A1ZS-06 16 19467925 19467925 T C TMC5 Intron 0.36 TCGA-FS-A1ZS-06 16 19474688 19474688 G A TMC5 Missense_Mutation p.R412Q 0.49 tolerated(0.13) benign(0.001) TCGA-FS-A1ZS-06 16 19883787 19883787 G A GPRC5B Silent p.F127F 0.39 TCGA-FS-A1ZS-06 16 24268018 24268018 C T CACNG3 5'UTR 0.39 TCGA-FS-A1ZS-06 16 30976574 30976574 C T SETD1A Missense_Mutation p.S504F 0.39 possibly_damaging(0.831) TCGA-FS-A1ZS-06 16 31090737 31090737 C T ZNF646 Missense_Mutation p.P1031L 0.35 tolerated(0.16) benign(0.004) TCGA-FS-A1ZS-06 16 55616943 55616943 C T LPCAT2 Missense_Mutation p.S523F 0.31 deleterious(0.02) benign(0.197) TCGA-FS-A1ZS-06 16 61935082 61935082 C T CDH8 Splice_Site p.X183_splice 0.39 TCGA-FS-A1ZS-06 16 67314416 67314416 T C PLEKHG4 Silent p.L157L 0.30 TCGA-FS-A1ZS-06 16 70954741 70954741 C T HYDIN Missense_Mutation p.R2513K 0.44 possibly_damaging(0.567) TCGA-FS-A1ZS-06 16 72923658 72923658 G A ZFHX3 Silent p.T1140T 0.41 TCGA-FS-A1ZS-06 16 77327117 77327117 T C ADAMTS18 Silent p.E1015E 0.37 TCGA-FS-A1ZS-06 16 81314522 81314522 G A BCMO1 Missense_Mutation p.E388K 0.55 tolerated(0.17) benign(0.363) TCGA-FS-A1ZS-06 16 87448144 87448144 C T ZCCHC14 Silent p.E356E 0.44 TCGA-FS-A1ZS-06 16 89245928 89245928 C T CDH15 Silent p.I49I 0.38 TCGA-FS-A1ZS-06 17 10406157 10406157 G A MYH1 Silent p.L1003L 0.15 TCGA-FS-A1ZS-06 17 17957494 17957494 C T GID4 Silent p.H184H 0.12 TCGA-FS-A1ZS-06 17 18139963 18139963 G A LLGL1 Silent p.V465V 0.63 TCGA-FS-A1ZS-06 17 33680383 33680383 C T SLFN11 Missense_Mutation p.E632K 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZS-06 17 39036510 39036510 C T KRT20 Missense_Mutation p.V212I 0.14 tolerated(0.23) benign(0.124) TCGA-FS-A1ZS-06 17 41020555 41020555 C T AOC4P RNA 0.25 TCGA-FS-A1ZS-06 17 43216450 43216450 C T ACBD4 Silent p.F250F 0.71 TCGA-FS-A1ZS-06 17 47218690 47218690 C A B4GALNT2 Missense_Mutation p.F92L 0.17 tolerated(0.6) benign(0.008) TCGA-FS-A1ZS-06 17 60813279 60813279 G A MARCH10 Intron 0.14 TCGA-FS-A1ZS-06 17 64225523 64225523 C T APOH 5'UTR 0.61 TCGA-FS-A1ZS-06 17 71419607 71419607 C T SDK2 Silent p.R605R 0.09 TCGA-FS-A1ZS-06 17 80041418 80041418 G A FASN Silent p.F1772F 0.58 TCGA-FS-A1ZS-06 18 14478943 14478943 C T CXADRP3 RNA 0.29 TCGA-FS-A1ZS-06 18 7080389 7080389 C T LAMA1 Silent p.E43E 0.15 TCGA-FS-A1ZS-06 18 76755055 76755055 C - SALL3 Frame_Shift_Del p.Q1022Sfs*4 0.34 TCGA-FS-A1ZS-06 19 10079154 10079154 C T COL5A3 Silent p.L1407L 0.70 TCGA-FS-A1ZS-06 19 11917544 11917544 G A ZNF491 Missense_Mutation p.R259Q 0.09 tolerated(0.95) benign(0.011) TCGA-FS-A1ZS-06 19 15839113 15839113 C T OR10H2 Missense_Mutation p.S87F 0.13 tolerated(0.07) benign(0.02) TCGA-FS-A1ZS-06 19 16638908 16638908 G A CHERP Missense_Mutation p.P430S 0.16 tolerated_low_confidence(0.15) benign(0.112) TCGA-FS-A1ZS-06 19 31768105 31768105 G A TSHZ3 Missense_Mutation p.P865L 0.21 deleterious(0) benign(0.052) TCGA-FS-A1ZS-06 19 31768106 31768106 G A TSHZ3 Missense_Mutation p.P865S 0.22 tolerated(0.23) benign(0.4) TCGA-FS-A1ZS-06 19 36223707 36223707 C T KMT2B Missense_Mutation p.S2086L 0.24 benign(0.096) TCGA-FS-A1ZS-06 19 39013913 39013913 C T RYR1 Silent p.S3468S 0.79 TCGA-FS-A1ZS-06 19 39125817 39125817 C T EIF3K Intron 0.20 TCGA-FS-A1ZS-06 19 40715123 40715123 C T MAP3K10 Missense_Mutation p.R517C 0.12 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZS-06 19 41383104 41383104 G A CYP2A7 Silent p.F384F 0.15 TCGA-FS-A1ZS-06 19 43698609 43698609 C T PSG4 Missense_Mutation p.G376R 0.68 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZS-06 19 47570154 47570154 C T ZC3H4 Missense_Mutation p.R1124H 0.14 unknown(0) TCGA-FS-A1ZS-06 19 49548505 49548505 C T CGB5 Missense_Mutation p.P151L 0.35 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-FS-A1ZS-06 19 52250117 52250117 T C FPR1 Missense_Mutation p.N44S 0.74 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZS-06 19 55143640 55143640 C T LILRB1 Missense_Mutation p.P205S 0.71 deleterious(0.04) benign(0.189) TCGA-FS-A1ZS-06 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.64 deleterious(0.03) benign(0.227) TCGA-FS-A1ZS-06 19 9047181 9047181 C T MUC16 Missense_Mutation p.E11484K 0.67 benign(0.007) TCGA-FS-A1ZS-06 19 9071825 9071825 T G MUC16 Silent p.T5207T 0.16 TCGA-FS-A1ZS-06 19 9204331 9204331 C T OR1M1 Silent p.S137S 0.68 TCGA-FS-A1ZS-06 19 9237431 9237431 G A OR7G3 Silent p.L66L 0.63 TCGA-FS-A1ZS-06 19 9524549 9524549 G A ZNF266 Missense_Mutation p.P351L 0.64 deleterious(0.04) probably_damaging(0.955) TCGA-FS-A1ZS-06 19 9524550 9524550 G A ZNF266 Missense_Mutation p.P351S 0.64 deleterious(0) probably_damaging(0.956) TCGA-FS-A1ZS-06 1 103348859 103348859 A G COL11A1 Missense_Mutation p.W1623R 0.82 unknown(0) TCGA-FS-A1ZS-06 1 120286747 120286747 T C PHGDH 3'UTR 0.26 TCGA-FS-A1ZS-06 1 12785954 12785954 G A AADACL3 Silent p.K348K 0.25 TCGA-FS-A1ZS-06 1 151641027 151641027 G A SNX27 Silent p.L355L 0.58 TCGA-FS-A1ZS-06 1 154960536 154960536 C T FLAD1 Intron 0.60 TCGA-FS-A1ZS-06 1 156873814 156873814 G A PEAR1 Nonsense_Mutation p.W32* 0.57 TCGA-FS-A1ZS-06 1 157548559 157548559 C A FCRL4 Splice_Site p.X454_splice 0.59 TCGA-FS-A1ZS-06 1 157548560 157548560 C T FCRL4 Missense_Mutation p.V454I 0.60 tolerated(0.11) benign(0.138) TCGA-FS-A1ZS-06 1 159273949 159273949 C T FCER1A Missense_Mutation p.P103L 0.69 deleterious(0) probably_damaging(0.975) TCGA-FS-A1ZS-06 1 159505705 159505705 G A OR10J5 Silent p.F31F 0.57 TCGA-FS-A1ZS-06 1 16056311 16056311 A G PLEKHM2 Missense_Mutation p.K699E 0.14 tolerated(0.24) possibly_damaging(0.718) TCGA-FS-A1ZS-06 1 161130921 161130921 C T USP21 Missense_Mutation p.P164L 0.62 deleterious_low_confidence(0) benign(0.011) TCGA-FS-A1ZS-06 1 161134339 161134339 C T USP21 Missense_Mutation p.R441W 0.67 deleterious(0) possibly_damaging(0.659) TCGA-FS-A1ZS-06 1 178821885 178821885 C T ANGPTL1 Silent p.G407G 0.18 TCGA-FS-A1ZS-06 1 180461443 180461443 G A ACBD6 Silent p.I115I 0.70 TCGA-FS-A1ZS-06 1 181726222 181726222 G A CACNA1E Missense_Mutation p.G1430E 0.53 deleterious(0) probably_damaging(0.931) TCGA-FS-A1ZS-06 1 192153620 192153620 G A RGS18 Missense_Mutation p.R215Q 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-FS-A1ZS-06 1 196749096 196749096 C T CFHR3 Silent p.I141I 0.47 TCGA-FS-A1ZS-06 1 196884083 196884083 C T CFHR4 Intron 0.11 TCGA-FS-A1ZS-06 1 197093279 197093279 C T ASPM Missense_Mutation p.M1117I 0.11 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZS-06 1 197313433 197313433 T C CRB1 Silent p.I225I 0.24 TCGA-FS-A1ZS-06 1 210970930 210970930 C T KCNH1 Missense_Mutation p.G612E 0.56 deleterious(0) probably_damaging(0.928) TCGA-FS-A1ZS-06 1 226127455 226127455 C T LEFTY2 Splice_Site p.X166_splice 0.52 TCGA-FS-A1ZS-06 1 23637799 23637799 T A HNRNPR Missense_Mutation p.N398I 0.52 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZS-06 1 240071827 240071827 C T CHRM3 Missense_Mutation p.S359F 0.23 tolerated(0.22) benign(0.035) TCGA-FS-A1ZS-06 1 27618877 27618877 C T WDTC1 Silent p.I217I 0.14 TCGA-FS-A1ZS-06 1 28920589 28920589 C T RAB42 Missense_Mutation p.S93F 0.13 deleterious(0.03) benign(0.051) TCGA-FS-A1ZS-06 1 32636331 32636331 C T KPNA6 Nonsense_Mutation p.Q483* 0.12 TCGA-FS-A1ZS-06 1 33402703 33402703 G T RNF19B Missense_Mutation p.P635T 0.19 tolerated_low_confidence(0.39) benign(0.108) TCGA-FS-A1ZS-06 1 34046481 34046481 G A CSMD2 Missense_Mutation p.P2422L 0.67 deleterious(0) probably_damaging(0.938) TCGA-FS-A1ZS-06 1 34209041 34209041 G A CSMD2 Silent p.F631F 0.24 TCGA-FS-A1ZS-06 1 43818334 43818334 G A MPL Missense_Mutation p.G600E 0.28 tolerated(0.07) possibly_damaging(0.873) TCGA-FS-A1ZS-06 1 45807144 45807144 G A TOE1 Splice_Site p.X79_splice 0.67 TCGA-FS-A1ZS-06 1 45807145 45807145 G A TOE1 Silent p.Q79Q 0.64 TCGA-FS-A1ZS-06 1 47583502 47583502 C T CYP4Z1 Missense_Mutation p.R472C 0.76 deleterious(0.04) probably_damaging(0.965) TCGA-FS-A1ZS-06 1 6521677 6521677 G A TNFRSF25 Silent p.R366R 0.16 TCGA-FS-A1ZS-06 1 94643639 94643639 G C ARHGAP29 Silent p.P855P 0.78 TCGA-FS-A1ZS-06 20 25439082 25439082 G A NINL Silent p.A1260A 0.55 TCGA-FS-A1ZS-06 20 279331 279331 G A ZCCHC3 Silent p.R368R 0.54 TCGA-FS-A1ZS-06 20 33539633 33539633 A G GSS Missense_Mutation p.L8P 0.34 deleterious(0) possibly_damaging(0.818) TCGA-FS-A1ZS-06 20 33999785 33999785 C T UQCC1 5'UTR 0.54 TCGA-FS-A1ZS-06 20 33999786 33999786 C T UQCC1 5'UTR 0.54 TCGA-FS-A1ZS-06 20 35769577 35769577 G A MROH8 Silent p.S519S 0.37 TCGA-FS-A1ZS-06 20 3735139 3735141 GCC TT C20orf27 Frame_Shift_Del p.A135Sfs*13 0.28 TCGA-FS-A1ZS-06 20 37524229 37524229 G A PPP1R16B Missense_Mutation p.E115K 0.33 deleterious(0) benign(0.094) TCGA-FS-A1ZS-06 20 40827885 40827885 C T PTPRT Missense_Mutation p.G829E 0.40 deleterious(0.01) possibly_damaging(0.454) TCGA-FS-A1ZS-06 20 40827886 40827886 C T PTPRT Missense_Mutation p.G829R 0.40 deleterious(0.01) possibly_damaging(0.654) TCGA-FS-A1ZS-06 20 42158988 42158988 A G L3MBTL1 Missense_Mutation p.N352S 0.45 deleterious(0) probably_damaging(0.96) TCGA-FS-A1ZS-06 20 44666019 44666019 C T SLC12A5 Silent p.L226L 0.40 TCGA-FS-A1ZS-06 20 50286579 50286579 G A ATP9A Missense_Mutation p.S417L 0.43 deleterious(0) benign(0.06) TCGA-FS-A1ZS-06 20 57767335 57767335 G A ZNF831 Missense_Mutation p.D421N 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZS-06 20 60909287 60909287 G A LAMA5 Silent p.F898F 0.33 TCGA-FS-A1ZS-06 20 9417698 9417698 G A PLCB4 Missense_Mutation p.G876E 0.32 tolerated(0.36) benign(0.037) TCGA-FS-A1ZS-06 21 28304486 28304486 C T ADAMTS5 Missense_Mutation p.R629H 0.16 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZS-06 21 30339415 30339415 G A LTN1 Silent p.S512S 0.30 TCGA-FS-A1ZS-06 21 41447075 41447075 G A DSCAM Missense_Mutation p.L1593F 0.53 tolerated(0.07) benign(0.342) TCGA-FS-A1ZS-06 21 41450723 41450723 G A DSCAM Silent p.I1534I 0.53 TCGA-FS-A1ZS-06 21 41550861 41550861 G A DSCAM Silent p.D980D 0.62 TCGA-FS-A1ZS-06 21 41725626 41725626 G A DSCAM Missense_Mutation p.R234C 0.55 deleterious(0.02) possibly_damaging(0.846) TCGA-FS-A1ZS-06 22 42095520 42095520 C T MEI1 5'UTR 0.40 TCGA-FS-A1ZS-06 22 45593791 45593791 G A KIAA0930 Silent p.L357L 0.20 TCGA-FS-A1ZS-06 22 45593792 45593792 G A KIAA0930 Silent p.S356S 0.20 TCGA-FS-A1ZS-06 2 103300682 103300682 C T SLC9A2 Nonsense_Mutation p.R438* 0.51 TCGA-FS-A1ZS-06 2 105959566 105959566 C T C2orf49 Silent p.D176D 0.53 TCGA-FS-A1ZS-06 2 107040105 107040105 T A RGPD3 Nonsense_Mutation p.K1440* 0.20 TCGA-FS-A1ZS-06 2 108487225 108487225 G A RGPD4 Missense_Mutation p.G922E 0.38 deleterious(0.02) possibly_damaging(0.573) TCGA-FS-A1ZS-06 2 108488139 108488139 G A RGPD4 Missense_Mutation p.G1227S 0.36 tolerated(0.45) benign(0.027) TCGA-FS-A1ZS-06 2 113496483 113496483 C T CKAP2L Missense_Mutation p.E719K 0.37 deleterious(0.03) benign(0.373) TCGA-FS-A1ZS-06 2 113496484 113496484 T C CKAP2L Silent p.L718L 0.36 TCGA-FS-A1ZS-06 2 130832585 130832585 G A POTEF Silent p.T820T 0.51 TCGA-FS-A1ZS-06 2 158115636 158115636 C T GALNT5 Missense_Mutation p.P348S 0.50 tolerated_low_confidence(0.2) benign(0.007) TCGA-FS-A1ZS-06 2 158977948 158977948 C T UPP2 Missense_Mutation p.T218M 0.36 deleterious(0.05) benign(0.394) TCGA-FS-A1ZS-06 2 160241774 160241774 A G BAZ2B Missense_Mutation p.L1193P 0.35 probably_damaging(0.979) TCGA-FS-A1ZS-06 2 167055770 167055770 C T SCN9A Silent p.A1782A 0.43 TCGA-FS-A1ZS-06 2 179396515 179396515 G A TTN Nonsense_Mutation p.R34943* 0.39 TCGA-FS-A1ZS-06 2 179444752 179444752 C T TTN Missense_Mutation p.G22421E 0.36 TCGA-FS-A1ZS-06 2 179454707 179454707 G A TTN Missense_Mutation p.T20582I 0.45 TCGA-FS-A1ZS-06 2 179475004 179475004 G A TTN Silent p.V17083V 0.41 TCGA-FS-A1ZS-06 2 179604775 179604775 C T TTN Silent p.L4395L 0.51 TCGA-FS-A1ZS-06 2 179635022 179635022 C T TTN Silent p.K2802K 0.34 TCGA-FS-A1ZS-06 2 185801739 185801739 G A ZNF804A Missense_Mutation p.G539E 0.45 tolerated(0.42) probably_damaging(0.998) TCGA-FS-A1ZS-06 2 189850417 189850417 T C COL3A1 Silent p.N120N 0.45 TCGA-FS-A1ZS-06 2 220424197 220424197 G A OBSL1 Silent p.Y992Y 0.40 TCGA-FS-A1ZS-06 2 230223229 230223229 C T DNER 3'UTR 0.37 TCGA-FS-A1ZS-06 2 234681148 234681148 G A UGT1A4 Silent p.R516R 0.53 TCGA-FS-A1ZS-06 2 27455482 27455482 C T CAD Missense_Mutation p.L938F 0.43 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZS-06 2 49190802 49190802 G A FSHR Silent p.I386I 0.46 TCGA-FS-A1ZS-06 2 53943841 53943841 G A ASB3 Missense_Mutation p.P250L 0.46 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZS-06 2 64189210 64189210 T C VPS54 Missense_Mutation p.Q331R 0.36 tolerated(0.17) probably_damaging(0.949) TCGA-FS-A1ZS-06 2 68692015 68692015 C T FBXO48 Missense_Mutation p.R88Q 0.15 tolerated(1) benign(0) TCGA-FS-A1ZS-06 2 73717740 73717740 G C ALMS1 Missense_Mutation p.R2884P 0.37 benign(0.428) TCGA-FS-A1ZS-06 2 74688900 74688900 G A MOGS Silent p.L672L 0.37 TCGA-FS-A1ZS-06 2 85769831 85769831 C T MAT2A Silent p.S304S 0.52 TCGA-FS-A1ZS-06 2 85892780 85892780 G A SFTPB Silent p.V189V 0.47 TCGA-FS-A1ZS-06 2 86979038 86979038 G C RMND5A Missense_Mutation p.S102T 0.40 tolerated(0.93) benign(0.016) TCGA-FS-A1ZS-06 3 101483760 101483760 C T CEP97 Missense_Mutation p.P655S 0.85 tolerated(0.28) benign(0.009) TCGA-FS-A1ZS-06 3 113753789 113753789 C T KIAA1407 Silent p.V267V 0.81 TCGA-FS-A1ZS-06 3 137888984 137888984 G A DBR1 Missense_Mutation p.H152Y 0.83 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZS-06 3 140123409 140123409 C T CLSTN2 Silent p.V146V 0.91 TCGA-FS-A1ZS-06 3 142769880 142769880 C T U2SURP Missense_Mutation p.L882F 0.81 deleterious(0) probably_damaging(0.966) TCGA-FS-A1ZS-06 3 151129185 151129185 A T MED12L Silent p.A1975A 0.94 TCGA-FS-A1ZS-06 3 45127026 45127026 C T CDCP1 3'UTR 0.89 TCGA-FS-A1ZS-06 3 47618694 47618694 G A CSPG5 Silent p.D274D 0.92 TCGA-FS-A1ZS-06 3 48622503 48622503 C T COL7A1 Missense_Mutation p.G1314E 0.81 unknown(0) TCGA-FS-A1ZS-06 3 48626838 48626838 C G COL7A1 Missense_Mutation p.D746H 0.10 unknown(0) TCGA-FS-A1ZS-06 3 50645938 50645938 G A CISH Missense_Mutation p.P53L 0.84 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-FS-A1ZS-06 3 57509322 57509322 C T DNAH12 Missense_Mutation p.M89I 0.88 tolerated(0.22) benign(0) TCGA-FS-A1ZS-06 3 73024140 73024140 G A GXYLT2 Missense_Mutation p.D388N 0.74 deleterious(0.02) possibly_damaging(0.723) TCGA-FS-A1ZS-06 4 114294463 114294463 G A ANK2 Missense_Mutation p.R3906Q 0.17 probably_damaging(0.999) TCGA-FS-A1ZS-06 4 119951551 119951551 G A SYNPO2 Missense_Mutation p.E541K 0.71 deleterious(0.01) benign(0.255) TCGA-FS-A1ZS-06 4 141315179 141315179 C T CLGN Missense_Mutation p.R389Q 0.25 tolerated(0.1) benign(0.266) TCGA-FS-A1ZS-06 4 141484552 141484552 C T UCP1 Missense_Mutation p.G149E 0.21 deleterious(0.04) probably_damaging(0.955) TCGA-FS-A1ZS-06 4 159533492 159533492 G A RXFP1 Missense_Mutation p.G220R 0.15 deleterious(0) probably_damaging(0.936) TCGA-FS-A1ZS-06 4 16760851 16760851 G A LDB2 Silent p.A55A 0.44 TCGA-FS-A1ZS-06 4 187557862 187557862 G A FAT1 Silent p.P1283P 0.61 TCGA-FS-A1ZS-06 4 2492179 2492179 C T RNF4 5'UTR 0.33 TCGA-FS-A1ZS-06 4 69696575 69696575 G A UGT2B10 Missense_Mutation p.G522E 0.61 tolerated(0.15) benign(0.062) TCGA-FS-A1ZS-06 4 70352395 70352395 C T UGT2B4 Missense_Mutation p.G341E 0.53 deleterious(0.01) possibly_damaging(0.731) TCGA-FS-A1ZS-06 4 8383290 8383290 C T ACOX3 Missense_Mutation p.E528K 0.60 tolerated(0.31) benign(0.05) TCGA-FS-A1ZS-06 4 90170412 90170412 C T GPRIN3 Missense_Mutation p.V284M 0.20 tolerated(0.14) benign(0.101) TCGA-FS-A1ZS-06 4 94128596 94128596 C T GRID2 Silent p.I259I 0.14 TCGA-FS-A1ZS-06 5 121187736 121187736 C T FTMT Silent p.F26F 0.39 TCGA-FS-A1ZS-06 5 121761165 121761165 G A SNCAIP Missense_Mutation p.G374E 0.38 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZS-06 5 140248752 140248752 G A PCDHA11 Missense_Mutation p.E22K 0.51 tolerated_low_confidence(0.06) benign(0.002) TCGA-FS-A1ZS-06 5 1403158 1403158 C T SLC6A3 Missense_Mutation p.G549E 0.46 tolerated(0.49) benign(0.053) TCGA-FS-A1ZS-06 5 140346810 140346810 C T PCDHAC2 Silent p.Y153Y 0.34 TCGA-FS-A1ZS-06 5 140503929 140503929 G A PCDHB4 Silent p.K783K 0.33 TCGA-FS-A1ZS-06 5 140515407 140515407 C T PCDHB5 Missense_Mutation p.P131S 0.31 deleterious_low_confidence(0) possibly_damaging(0.595) TCGA-FS-A1ZS-06 5 142526862 142526862 T C ARHGAP26 Missense_Mutation p.L635P 0.35 tolerated(0.24) possibly_damaging(0.766) TCGA-FS-A1ZS-06 5 147286010 147286010 G A C5orf46 Silent p.L19L 0.38 TCGA-FS-A1ZS-06 5 150275613 150275613 C T ZNF300 Silent p.L412L 0.47 TCGA-FS-A1ZS-06 5 150714951 150714951 G A SLC36A2 Missense_Mutation p.S228F 0.38 deleterious(0.01) possibly_damaging(0.896) TCGA-FS-A1ZS-06 5 151239414 151239414 G A GLRA1 Silent p.F136F 0.56 TCGA-FS-A1ZS-06 5 160721238 160721238 C T GABRB2 Silent p.K463K 0.24 TCGA-FS-A1ZS-06 5 180625727 180625727 C T TRIM7 Silent p.K317K 0.26 TCGA-FS-A1ZS-06 5 35921135 35921135 G A CAPSL Nonsense_Mutation p.R30* 0.36 TCGA-FS-A1ZS-06 5 35955882 35955882 C T UGT3A1 Missense_Mutation p.G387E 0.33 deleterious(0.05) possibly_damaging(0.85) TCGA-FS-A1ZS-06 5 43174852 43174852 C A ZNF131 Missense_Mutation p.Q463K 0.22 tolerated(0.12) benign(0.415) TCGA-FS-A1ZS-06 5 55407474 55407474 C T ANKRD55 Silent p.R367R 0.41 TCGA-FS-A1ZS-06 5 89924572 89924572 G A GPR98 Missense_Mutation p.E478K 0.49 possibly_damaging(0.636) TCGA-FS-A1ZS-06 5 96460206 96460206 C T LIX1 Silent p.V70V 0.44 TCGA-FS-A1ZS-06 6 105233061 105233061 G A HACE1 Missense_Mutation p.A403V 0.53 tolerated(0.19) benign(0.006) TCGA-FS-A1ZS-06 6 108502054 108502054 C T NR2E1 Silent p.I261I 0.65 TCGA-FS-A1ZS-06 6 110714493 110714493 C T DDO Missense_Mutation p.E199K 0.51 deleterious(0.01) possibly_damaging(0.749) TCGA-FS-A1ZS-06 6 117237424 117237424 G A RFX6 Missense_Mutation p.E307K 0.57 tolerated(0.15) benign(0.103) TCGA-FS-A1ZS-06 6 128176299 128176299 A G THEMIS Silent p.C42C 0.74 TCGA-FS-A1ZS-06 6 144780342 144780342 C A UTRN Silent p.P853P 0.56 TCGA-FS-A1ZS-06 6 30864588 30864588 C T DDR1 Silent p.F605F 0.46 TCGA-FS-A1ZS-06 6 30864589 30864589 C T DDR1 Missense_Mutation p.P606S 0.45 tolerated(0.06) possibly_damaging(0.461) TCGA-FS-A1ZS-06 6 32159178 32159178 C A GPSM3 Nonsense_Mutation p.E150* 0.46 TCGA-FS-A1ZS-06 6 32940635 32940635 C T BRD2 5'UTR 0.21 TCGA-FS-A1ZS-06 6 38738263 38738263 G A DNAH8 Silent p.G347G 0.66 TCGA-FS-A1ZS-06 6 52052559 52052559 G A IL17A Silent p.R62R 0.22 TCGA-FS-A1ZS-06 6 63990205 63990205 G C LGSN Nonsense_Mutation p.Y417* 0.25 TCGA-FS-A1ZS-06 6 75887636 75887636 C T COL12A1 Missense_Mutation p.R727Q 0.54 probably_damaging(0.998) TCGA-FS-A1ZS-06 6 80635910 80635910 C T ELOVL4 Splice_Site p.X96_splice 0.32 TCGA-FS-A1ZS-06 6 84291985 84291985 C T SNAP91 Missense_Mutation p.G702E 0.51 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZS-06 7 100686664 100686664 G A MUC17 Silent p.K3989K 0.20 TCGA-FS-A1ZS-06 7 1131809 1131809 A T GPER1 Missense_Mutation p.T149S 0.23 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZS-06 7 1131810 1131810 C A GPER1 Missense_Mutation p.T149N 0.24 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZS-06 7 113518267 113518267 G A PPP1R3A Silent p.I960I 0.67 TCGA-FS-A1ZS-06 7 127229612 127229612 T A ARF5 Silent p.I74I 0.17 TCGA-FS-A1ZS-06 7 127229613 127229613 C T ARF5 Missense_Mutation p.R75W 0.18 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-FS-A1ZS-06 7 129098202 129098202 C T STRIP2 Silent p.D395D 0.52 TCGA-FS-A1ZS-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.72 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZS-06 7 141672908 141672908 G T TAS2R38 Silent p.S194S 0.19 TCGA-FS-A1ZS-06 7 141754553 141754553 G A MGAM Splice_Site p.X1054_splice 0.66 TCGA-FS-A1ZS-06 7 142013358 142013358 G A TRBV4-1 Silent p.E71E 0.64 TCGA-FS-A1ZS-06 7 142494282 142494282 C A TRBJ2-2 Missense_Mutation p.L14M 0.17 unknown(0) TCGA-FS-A1ZS-06 7 143140983 143140983 C T TAS2R60 Silent p.F146F 0.18 TCGA-FS-A1ZS-06 7 143141493 143141493 G A TAS2R60 Silent p.G316G 0.13 TCGA-FS-A1ZS-06 7 148514973 148514973 G A EZH2 Silent p.S412S 0.18 TCGA-FS-A1ZS-06 7 1518129 1518129 G A INTS1 Silent p.L1501L 0.31 TCGA-FS-A1ZS-06 7 33392474 33392474 G A BBS9 Missense_Mutation p.R514Q 0.30 tolerated(0.35) benign(0.141) TCGA-FS-A1ZS-06 7 36450695 36450695 C T ANLN Missense_Mutation p.R439C 0.17 tolerated(0.05) probably_damaging(0.993) TCGA-FS-A1ZS-06 7 4152989 4152989 C T SDK1 Missense_Mutation p.T1168I 0.51 deleterious(0) probably_damaging(1) TCGA-FS-A1ZS-06 7 47698873 47698873 G A C7orf65 3'UTR 0.56 TCGA-FS-A1ZS-06 7 50467675 50467675 G A IKZF1 Missense_Mutation p.E262K 0.69 deleterious(0) possibly_damaging(0.738) TCGA-FS-A1ZS-06 7 5104616 5104616 C T RBAK Missense_Mutation p.P510L 0.23 deleterious(0.01) benign(0.002) TCGA-FS-A1ZS-06 7 5104617 5104617 C T RBAK Silent p.P510P 0.22 TCGA-FS-A1ZS-06 7 56006850 56006850 G A ZNF713 Silent p.K148K 0.18 TCGA-FS-A1ZS-06 7 86469140 86469140 C T GRM3 Silent p.F770F 0.62 TCGA-FS-A1ZS-06 7 87516704 87516704 C T DBF4 Missense_Mutation p.H171Y 0.70 tolerated(0.11) possibly_damaging(0.727) TCGA-FS-A1ZS-06 7 92161833 92161833 G A RBM48 Missense_Mutation p.A140T 0.15 tolerated(0.19) benign(0.051) TCGA-FS-A1ZS-06 7 98633348 98633348 G A SMURF1 Intron 0.73 TCGA-FS-A1ZS-06 8 100479687 100479687 A G VPS13B Missense_Mutation p.Y1164C 0.26 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZS-06 8 124359340 124359340 A T ATAD2 Nonsense_Mutation p.L735* 0.24 TCGA-FS-A1ZS-06 8 133045342 133045342 G A OC90 Missense_Mutation p.S268F 0.31 deleterious(0) probably_damaging(0.957) TCGA-FS-A1ZS-06 8 142367699 142367699 G A GPR20 Missense_Mutation p.R109C 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZS-06 8 17401060 17401060 C T SLC7A2 Missense_Mutation p.S111F 0.41 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZS-06 8 24300064 24300064 G A ADAM7 Missense_Mutation p.G44E 0.19 tolerated(1) benign(0.004) TCGA-FS-A1ZS-06 8 27729502 27729502 C A SCARA5 Silent p.V479V 0.38 TCGA-FS-A1ZS-06 8 2813184 2813184 G A CSMD1 Silent p.F3307F 0.47 TCGA-FS-A1ZS-06 8 55538614 55538614 G A RP1 Silent p.G724G 0.36 TCGA-FS-A1ZS-06 8 55539794 55539794 C T RP1 Missense_Mutation p.H1118Y 0.35 deleterious(0) benign(0.021) TCGA-FS-A1ZS-06 8 6302683 6302683 C T MCPH1 Silent p.T480T 0.49 TCGA-FS-A1ZS-06 8 6873426 6873426 G A DEFA3 3'UTR 0.20 TCGA-FS-A1ZS-06 8 72229851 72229851 G A EYA1 Silent p.L164L 0.35 TCGA-FS-A1ZS-06 9 113192706 113192706 C T SVEP1 Missense_Mutation p.G1793E 0.91 benign(0.12) TCGA-FS-A1ZS-06 9 113238568 113238568 C T SVEP1 Missense_Mutation p.D839N 0.86 probably_damaging(0.991) TCGA-FS-A1ZS-06 9 125582800 125582800 T A PDCL Missense_Mutation p.Q157L 0.69 tolerated(0.19) benign(0.006) TCGA-FS-A1ZS-06 9 125582801 125582801 G T PDCL Missense_Mutation p.Q157K 0.69 tolerated(0.65) benign(0.111) TCGA-FS-A1ZS-06 9 136501646 136501646 C T DBH Silent p.I51I 0.69 TCGA-FS-A1ZS-06 9 138713473 138713473 C T CAMSAP1 Missense_Mutation p.G1012R 0.71 deleterious(0.01) possibly_damaging(0.714) TCGA-FS-A1ZS-06 9 5163912 5163912 G A INSL6 3'UTR 0.81 TCGA-FS-A1ZS-06 9 75435973 75435973 C T TMC1 Missense_Mutation p.P660L 0.80 deleterious(0) probably_damaging(1) TCGA-FS-A1ZS-06 9 80336217 80336217 G A GNAQ 3'UTR 0.88 TCGA-FS-A1ZS-06 X 105450147 105450147 C T MUM1L1 Missense_Mutation p.S241L 1.00 tolerated(0.28) unknown(0) TCGA-FS-A1ZS-06 X 107975749 107975749 G A IRS4 3'UTR 0.33 TCGA-FS-A1ZS-06 X 138708441 138708441 C T MCF2 Missense_Mutation p.E260K 0.84 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZS-06 X 140995273 140995273 C T MAGEC1 Missense_Mutation p.P695S 0.84 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FS-A1ZS-06 X 142717680 142717680 C T SLITRK4 Silent p.V415V 0.89 TCGA-FS-A1ZS-06 X 153649022 153649022 C T TAZ Missense_Mutation p.P242L 0.74 deleterious(0) possibly_damaging(0.887) TCGA-FS-A1ZS-06 X 154157053 154157053 C T F8 Missense_Mutation p.R1671H 0.85 tolerated(0.56) benign(0.004) TCGA-FS-A1ZS-06 X 35994002 35994002 G A CXorf22 Silent p.G895G 0.79 TCGA-FS-A1ZS-06 X 37026916 37026916 C T FAM47C Missense_Mutation p.L145F 0.75 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZS-06 X 48214129 48214129 T C SSX3 Missense_Mutation p.K41R 0.88 tolerated(0.44) possibly_damaging(0.689) TCGA-FS-A1ZS-06 X 57405106 57405106 G A FAAH2 Silent p.Q255Q 0.85 TCGA-FS-A1ZS-06 X 69843814 69843814 C T TEX11 Silent p.P594P 0.82 TCGA-FS-A1ZS-06 X 83116186 83116186 G A CYLC1 5'UTR 0.89 TCGA-FS-A1ZT-06 10 116038498 116038498 C G VWA2 Missense_Mutation p.P241A 0.27 tolerated(0.08) possibly_damaging(0.516) TCGA-FS-A1ZT-06 10 118891748 118891748 G A VAX1 3'Flank 0.31 TCGA-FS-A1ZT-06 10 135368917 135368917 C T SYCE1 Missense_Mutation p.G286R 0.38 tolerated(0.12) benign(0.333) TCGA-FS-A1ZT-06 10 28272791 28272791 C T ARMC4 Missense_Mutation p.G267E 0.34 tolerated(0.71) benign(0) TCGA-FS-A1ZT-06 10 50227606 50227606 G A VSTM4 3'UTR 0.29 TCGA-FS-A1ZT-06 10 64977081 64977081 G C JMJD1C Silent p.S188S 0.19 TCGA-FS-A1ZT-06 10 96741004 96741004 G A CYP2C9 Silent p.R342R 0.35 TCGA-FS-A1ZT-06 10 97101161 97101161 G A SORBS1 Missense_Mutation p.P851S 0.23 deleterious(0.01) benign(0.031) TCGA-FS-A1ZT-06 11 1265406 1265406 G A MUC5B Silent p.T2432T 0.30 TCGA-FS-A1ZT-06 11 18956353 18956353 G A MRGPRX1 5'UTR 0.25 TCGA-FS-A1ZT-06 11 31113050 31113050 C T DCDC1 Missense_Mutation p.M709I 0.18 tolerated(0.32) benign(0.006) TCGA-FS-A1ZT-06 11 45949732 45949732 C T GYLTL1B Missense_Mutation p.H587Y 0.46 deleterious(0.04) benign(0.285) TCGA-FS-A1ZT-06 11 50003708 50003708 G A OR4C12 Silent p.I110I 0.30 TCGA-FS-A1ZT-06 11 55703636 55703636 G A OR5I1 Missense_Mutation p.P81S 0.55 deleterious(0.01) benign(0.005) TCGA-FS-A1ZT-06 11 64761963 64761963 C T BATF2 Missense_Mutation p.R33Q 0.40 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZT-06 11 65268581 65268581 T C MALAT1 RNA 0.34 TCGA-FS-A1ZT-06 11 67223588 67223588 C T CABP4 Intron 0.15 TCGA-FS-A1ZT-06 11 67286585 67286585 T C CABP2 3'UTR 0.17 TCGA-FS-A1ZT-06 11 67401726 67401726 C T TBX10 Nonsense_Mutation p.W161* 0.14 TCGA-FS-A1ZT-06 11 68338522 68338522 T A PPP6R3 Nonsense_Mutation p.C431* 0.12 TCGA-FS-A1ZT-06 11 71720190 71720190 C T NUMA1 Silent p.Q1627Q 0.11 TCGA-FS-A1ZT-06 11 7818394 7818394 C T OR5P2 Missense_Mutation p.M32I 0.30 tolerated(0.44) benign(0.001) TCGA-FS-A1ZT-06 12 109186137 109186137 G A SSH1 Silent p.T606T 0.32 TCGA-FS-A1ZT-06 12 12022522 12022522 C T ETV6 Missense_Mutation p.R210C 0.61 deleterious(0.02) possibly_damaging(0.818) TCGA-FS-A1ZT-06 12 40758797 40758797 A T LRRK2 Silent p.I2445I 0.30 TCGA-FS-A1ZT-06 12 4479645 4479645 G A FGF23 Missense_Mutation p.S207L 0.52 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-FS-A1ZT-06 12 47629874 47629874 C T PCED1B Missense_Mutation p.S343F 0.14 tolerated(0.16) possibly_damaging(0.675) TCGA-FS-A1ZT-06 12 54894364 54894364 C T NCKAP1L Silent p.F87F 0.37 TCGA-FS-A1ZT-06 12 5603351 5603351 C T NTF3 Intron 0.46 TCGA-FS-A1ZT-06 12 81647355 81647355 G A ACSS3 Missense_Mutation p.R634Q 0.37 tolerated(0.09) benign(0.01) TCGA-FS-A1ZT-06 12 86199698 86199698 C T RASSF9 Silent p.V30V 0.20 TCGA-FS-A1ZT-06 12 88420773 88420773 C T C12orf50 5'UTR 0.24 TCGA-FS-A1ZT-06 12 93100879 93100879 C T C12orf74 Silent p.L158L 0.11 TCGA-FS-A1ZT-06 13 103698455 103698455 G A SLC10A2 3'UTR 0.35 TCGA-FS-A1ZT-06 13 46287777 46287777 C T SPERT Missense_Mutation p.S206L 0.41 tolerated(0.12) benign(0.103) TCGA-FS-A1ZT-06 13 52971458 52971458 C T THSD1 Missense_Mutation p.M310I 0.38 tolerated(0.42) benign(0.007) TCGA-FS-A1ZT-06 13 78184235 78184235 A G SCEL Missense_Mutation p.N444S 0.28 tolerated(0.1) benign(0.157) TCGA-FS-A1ZT-06 13 92345605 92345605 A G GPC5 Missense_Mutation p.N164D 0.25 tolerated(0.1) possibly_damaging(0.902) TCGA-FS-A1ZT-06 14 101402892 101402892 C T SNORD113-4 RNA 0.39 TCGA-FS-A1ZT-06 14 104174866 104174866 G A XRCC3 Silent p.I62I 0.30 TCGA-FS-A1ZT-06 14 24528870 24528870 C T LRRC16B Intron 0.31 TCGA-FS-A1ZT-06 14 92922945 92922945 C T SLC24A4 Silent p.S416S 0.47 TCGA-FS-A1ZT-06 14 96178600 96178600 C T TCL1A Missense_Mutation p.R85Q 0.18 tolerated(0.08) possibly_damaging(0.836) TCGA-FS-A1ZT-06 15 23932118 23932118 G A NDN Missense_Mutation p.P83S 0.19 tolerated(0.87) benign(0.016) TCGA-FS-A1ZT-06 15 35083365 35083365 G A ACTC1 Missense_Mutation p.R314C 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZT-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.22 deleterious_low_confidence(0.01) benign(0.118) TCGA-FS-A1ZT-06 15 43712773 43712773 G A TP53BP1 Missense_Mutation p.P1471S 0.21 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZT-06 15 51507285 51507285 C T CYP19A1 Missense_Mutation p.E335K 0.43 deleterious(0) possibly_damaging(0.905) TCGA-FS-A1ZT-06 15 53957929 53957929 C T WDR72 Missense_Mutation p.R601Q 0.33 tolerated(0.21) benign(0.008) TCGA-FS-A1ZT-06 15 68500616 68500616 G A CLN6 Silent p.F266F 0.23 TCGA-FS-A1ZT-06 15 72191306 72191306 C T MYO9A Missense_Mutation p.G1180R 0.40 tolerated_low_confidence(0.47) benign(0.001) TCGA-FS-A1ZT-06 15 74364645 74364645 C T GOLGA6A Missense_Mutation p.G503R 0.09 deleterious(0.03) possibly_damaging(0.477) TCGA-FS-A1ZT-06 15 84159532 84159532 C T SH3GL3 Intron 0.46 TCGA-FS-A1ZT-06 16 10721648 10721648 T G TEKT5 Missense_Mutation p.N417T 0.14 tolerated(0.32) benign(0.014) TCGA-FS-A1ZT-06 16 2017795 2017795 G A RNF151 Silent p.R73R 0.69 TCGA-FS-A1ZT-06 16 23700914 23700914 C T PLK1 Missense_Mutation p.P509S 0.15 deleterious(0.04) probably_damaging(0.914) TCGA-FS-A1ZT-06 16 31120614 31120614 G A BCKDK Missense_Mutation p.A24T 0.12 tolerated_low_confidence(0.37) unknown(0) TCGA-FS-A1ZT-06 16 3533560 3533560 C T NAA60 Missense_Mutation p.L179F 0.13 tolerated(0.13) benign(0.031) TCGA-FS-A1ZT-06 16 3613701 3613701 A C NLRC3 Missense_Mutation p.Y460D 0.59 deleterious(0.01) benign(0.275) TCGA-FS-A1ZT-06 16 56485432 56485432 G A OGFOD1 5'UTR 0.41 TCGA-FS-A1ZT-06 16 68961693 68961693 C T TANGO6 Missense_Mutation p.H784Y 0.17 tolerated(0.33) benign(0.001) TCGA-FS-A1ZT-06 16 715626 715626 C T WDR90 Intron 0.40 TCGA-FS-A1ZT-06 16 71604622 71604622 C T TAT Nonsense_Mutation p.W291* 0.14 TCGA-FS-A1ZT-06 16 72830830 72830830 C T ZFHX3 Silent p.E1917E 0.47 TCGA-FS-A1ZT-06 16 74946209 74946209 G A WDR59 Missense_Mutation p.R426C 0.45 tolerated(0.06) benign(0.013) TCGA-FS-A1ZT-06 16 77398242 77398242 C T ADAMTS18 Missense_Mutation p.R272K 0.27 tolerated(0.15) benign(0.039) TCGA-FS-A1ZT-06 16 77401347 77401347 G A ADAMTS18 Missense_Mutation p.R257C 0.36 deleterious(0.03) probably_damaging(0.985) TCGA-FS-A1ZT-06 16 81253771 81253771 C T PKD1L2 Missense_Mutation p.E69K 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-FS-A1ZT-06 17 10351212 10351212 C T MYH4 Missense_Mutation p.E1630K 0.46 deleterious(0) possibly_damaging(0.84) TCGA-FS-A1ZT-06 17 10352194 10352194 C T MYH4 Missense_Mutation p.R1451K 0.25 tolerated(0.15) benign(0.007) TCGA-FS-A1ZT-06 17 11895895 11895895 G A ZNF18 Silent p.L84L 0.15 TCGA-FS-A1ZT-06 17 13980198 13980198 T A COX10 Silent p.S108S 0.31 TCGA-FS-A1ZT-06 17 21319155 21319155 C T KCNJ12 Silent p.I167I 0.06 TCGA-FS-A1ZT-06 17 26684605 26684605 G A TMEM199 5'UTR 0.45 TCGA-FS-A1ZT-06 17 28613904 28613904 G A BLMH Silent p.I160I 0.17 TCGA-FS-A1ZT-06 17 38556559 38556559 A G TOP2A Missense_Mutation p.F968L 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-FS-A1ZT-06 17 48559550 48559550 C T RSAD1 Silent p.R191R 0.17 TCGA-FS-A1ZT-06 17 72916153 72916153 T C USH1G Missense_Mutation p.T260A 0.50 deleterious(0.01) benign(0.04) TCGA-FS-A1ZT-06 17 74309918 74309918 C T PRPSAP1 Missense_Mutation p.R279H 0.08 tolerated(0.07) benign(0.169) TCGA-FS-A1ZT-06 17 76395526 76395526 G A PGS1 Silent p.L203L 0.29 TCGA-FS-A1ZT-06 17 79650840 79650840 C T ARL16 Missense_Mutation p.G6R 0.62 deleterious_low_confidence(0) benign(0) TCGA-FS-A1ZT-06 18 19997039 19997039 C T CTAGE1 Missense_Mutation p.D246N 0.28 deleterious(0.03) benign(0.422) TCGA-FS-A1ZT-06 18 30092590 30092590 G A WBP11P1 RNA 0.35 TCGA-FS-A1ZT-06 18 61471982 61471982 C T SERPINB7 3'UTR 0.44 TCGA-FS-A1ZT-06 18 72345996 72345996 C T ZNF407 Silent p.S1007S 0.28 TCGA-FS-A1ZT-06 18 72346708 72346708 C T ZNF407 Missense_Mutation p.P1245S 0.24 tolerated(0.76) benign(0.004) TCGA-FS-A1ZT-06 18 76752243 76752243 G A SALL3 Silent p.E84E 0.32 TCGA-FS-A1ZT-06 19 17370779 17370779 G A USHBP1 Missense_Mutation p.S232F 0.41 deleterious(0.03) possibly_damaging(0.789) TCGA-FS-A1ZT-06 19 17766723 17766723 G A UNC13A Missense_Mutation p.P418S 0.30 tolerated_low_confidence(0.11) benign(0.005) TCGA-FS-A1ZT-06 19 3011090 3011090 G A TLE2 Silent p.T314T 0.50 TCGA-FS-A1ZT-06 19 31040136 31040136 G A ZNF536 Missense_Mutation p.D1204N 0.19 deleterious_low_confidence(0.03) benign(0.002) TCGA-FS-A1ZT-06 19 36351511 36351511 C T KIRREL2 Silent p.S290S 0.18 TCGA-FS-A1ZT-06 19 39998572 39998572 C T DLL3 Silent p.F592F 0.46 TCGA-FS-A1ZT-06 19 51729081 51729081 C T CD33 Silent p.I147I 0.24 TCGA-FS-A1ZT-06 19 54212013 54212013 C T MIR518C RNA 0.38 TCGA-FS-A1ZT-06 19 56321050 56321050 A C NLRP11 Missense_Mutation p.F309C 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZT-06 19 56549390 56549390 G A NLRP5 Splice_Site p.X872_splice 0.34 TCGA-FS-A1ZT-06 19 8322868 8322868 C G CERS4 Missense_Mutation p.Q283E 0.31 tolerated(0.21) benign(0.012) TCGA-FS-A1ZT-06 19 9075414 9075414 G A MUC16 Missense_Mutation p.S4011F 0.17 unknown(0) TCGA-FS-A1ZT-06 1 11008241 11008241 C T C1orf127 Missense_Mutation p.D651N 0.40 tolerated(0.06) probably_damaging(0.978) TCGA-FS-A1ZT-06 1 115226943 115226943 G A AMPD1 Missense_Mutation p.R175W 0.15 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZT-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.43 tolerated(0.06) benign(0.006) TCGA-FS-A1ZT-06 1 150921738 150921738 C T SETDB1 Nonsense_Mutation p.Q470* 0.59 TCGA-FS-A1ZT-06 1 151733936 151733936 G A MRPL9 Silent p.F193F 0.67 TCGA-FS-A1ZT-06 1 153409535 153409535 C T S100A7L2 Silent p.%3D 0.11 TCGA-FS-A1ZT-06 1 153533897 153533897 G A S100A2 3'UTR 0.59 TCGA-FS-A1ZT-06 1 155920754 155920754 G A ARHGEF2 Nonsense_Mutation p.R857* 0.66 TCGA-FS-A1ZT-06 1 158687447 158687447 G A OR6K3 Silent p.F153F 0.68 TCGA-FS-A1ZT-06 1 159277691 159277691 C T FCER1A Missense_Mutation p.P248L 0.72 tolerated(0.18) unknown(0) TCGA-FS-A1ZT-06 1 160254926 160254926 C T PEX19 5'UTR 0.67 TCGA-FS-A1ZT-06 1 160654542 160654542 G A CD48 Intron 0.61 TCGA-FS-A1ZT-06 1 17046596 17046596 G A ESPNP RNA 0.04 TCGA-FS-A1ZT-06 1 18958057 18958057 G A PAX7 5'UTR 0.25 TCGA-FS-A1ZT-06 1 196683021 196683021 G A CFH Missense_Mutation p.G498E 0.65 deleterious(0) probably_damaging(1) TCGA-FS-A1ZT-06 1 20107099 20107099 G A TMCO4 Silent p.S51S 0.36 TCGA-FS-A1ZT-06 1 201980236 201980236 C T ELF3 5'UTR 0.69 TCGA-FS-A1ZT-06 1 205632162 205632162 G A SLC45A3 Silent p.L253L 0.19 TCGA-FS-A1ZT-06 1 21940545 21940545 C T RAP1GAP Missense_Mutation p.G174D 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1ZT-06 1 228459864 228459864 C T OBSCN Silent p.A1976A 0.51 TCGA-FS-A1ZT-06 1 228596850 228596850 C T TRIM17 Intron 0.08 TCGA-FS-A1ZT-06 1 247027368 247027368 T C AHCTF1 Missense_Mutation p.E1142G 0.10 tolerated(0.48) benign(0.003) TCGA-FS-A1ZT-06 1 247752283 247752283 C T OR2G2 Missense_Mutation p.L208F 0.10 tolerated(0.4) probably_damaging(0.931) TCGA-FS-A1ZT-06 1 247921190 247921190 G A OR1C1 Silent p.I173I 0.63 TCGA-FS-A1ZT-06 1 248637245 248637245 C T OR2T3 Silent p.S198S 0.39 TCGA-FS-A1ZT-06 1 34666393 34666393 G A C1orf94 Missense_Mutation p.E344K 0.06 tolerated_low_confidence(0.06) benign(0.082) TCGA-FS-A1ZT-06 1 38331529 38331529 C T INPP5B Silent p.L806L 0.41 TCGA-FS-A1ZT-06 1 39987111 39987111 C T BMP8A Missense_Mutation p.P246L 0.15 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZT-06 1 43220884 43220884 G A LEPRE1 Missense_Mutation p.S392L 0.44 tolerated(0.66) benign(0.087) TCGA-FS-A1ZT-06 1 43893785 43893785 C T SZT2 Silent p.V1248V 0.46 TCGA-FS-A1ZT-06 20 19955650 19955650 G A RIN2 Silent p.R376R 0.20 TCGA-FS-A1ZT-06 20 32217709 32217709 C T CBFA2T2 Missense_Mutation p.S415F 0.42 deleterious(0.03) benign(0.364) TCGA-FS-A1ZT-06 20 45221138 45221138 G A SLC13A3 Silent p.F275F 0.15 TCGA-FS-A1ZT-06 20 49626128 49626128 G A KCNG1 Missense_Mutation p.P250S 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZT-06 20 60770987 60770987 G A MTG2 Missense_Mutation p.G112R 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZT-06 20 61299158 61299158 C T SLCO4A1 Missense_Mutation p.P512S 0.17 tolerated(0.7) benign(0.06) TCGA-FS-A1ZT-06 20 61299387 61299387 C A SLCO4A1 Silent p.I554I 0.16 TCGA-FS-A1ZT-06 20 61299440 61299440 C T SLCO4A1 Missense_Mutation p.S572L 0.16 deleterious(0.02) benign(0.168) TCGA-FS-A1ZT-06 20 62298843 62298843 C T RTEL1 Silent p.S236S 0.11 TCGA-FS-A1ZT-06 21 34668534 34668534 C T IL10RB Missense_Mutation p.P284S 0.45 tolerated(0.07) benign(0.045) TCGA-FS-A1ZT-06 22 20970673 20970673 C G SMPD4P1 RNA 0.25 TCGA-FS-A1ZT-06 22 21344765 21344765 G A LZTR1 Missense_Mutation p.G248R 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZT-06 22 35689093 35689093 C T HMGXB4 Missense_Mutation p.P583S 0.38 tolerated(0.12) probably_damaging(0.998) TCGA-FS-A1ZT-06 22 39380206 39380206 C T APOBEC3B Silent p.L48L 0.31 TCGA-FS-A1ZT-06 2 100210436 100210436 G A AFF3 Missense_Mutation p.P588S 0.42 tolerated_low_confidence(0.06) benign(0.022) TCGA-FS-A1ZT-06 2 130681236 130681236 C T AC079776.3 Intron 0.29 TCGA-FS-A1ZT-06 2 130792775 130792775 G A FAR2P1 5'Flank 0.29 TCGA-FS-A1ZT-06 2 132235770 132235770 G A TUBA3D Missense_Mutation p.G13S 0.31 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-FS-A1ZT-06 2 137928321 137928321 G A THSD7B Silent p.T512T 0.37 TCGA-FS-A1ZT-06 2 138208522 138208522 C T THSD7B Nonsense_Mutation p.R1023* 0.37 TCGA-FS-A1ZT-06 2 141243044 141243044 C T LRP1B Missense_Mutation p.G3098E 0.24 probably_damaging(0.931) TCGA-FS-A1ZT-06 2 168725727 168725727 C T B3GALT1 Missense_Mutation p.P60S 0.20 tolerated(0.07) benign(0.235) TCGA-FS-A1ZT-06 2 179433525 179433525 C T TTN Silent p.G25778G 0.27 TCGA-FS-A1ZT-06 2 179451422 179451422 G A TTN Silent p.I21402I 0.36 TCGA-FS-A1ZT-06 2 179614557 179614557 T G TTN Intron 0.36 TCGA-FS-A1ZT-06 2 202093959 202093959 C T CASP10 3'UTR 0.44 TCGA-FS-A1ZT-06 2 21225534 21225534 G A APOB Missense_Mutation p.P4254S 0.35 benign(0.007) TCGA-FS-A1ZT-06 2 227914823 227914823 G C COL4A4 Missense_Mutation p.P1059A 0.36 unknown(0) TCGA-FS-A1ZT-06 2 227958912 227958912 C T COL4A4 Missense_Mutation p.G433E 0.31 probably_damaging(0.993) TCGA-FS-A1ZT-06 2 26818053 26818053 G A CIB4 Missense_Mutation p.R107C 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-FS-A1ZT-06 2 36970354 36970354 A T VIT Missense_Mutation p.D77V 0.31 tolerated(0.07) possibly_damaging(0.586) TCGA-FS-A1ZT-06 2 39515377 39515377 A C MAP4K3 Missense_Mutation p.D453E 0.30 tolerated(0.31) benign(0.031) TCGA-FS-A1ZT-06 2 64208967 64208967 C T VPS54 Nonsense_Mutation p.W64* 0.20 TCGA-FS-A1ZT-06 2 80835375 80835375 C A CTNNA2 Missense_Mutation p.Q788K 0.17 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZT-06 3 124826446 124826446 C T SLC12A8 Nonsense_Mutation p.W528* 0.36 TCGA-FS-A1ZT-06 3 12653553 12653553 C A RAF1 Silent p.V72V 0.30 TCGA-FS-A1ZT-06 3 130286982 130286982 G A COL6A6 Missense_Mutation p.M645I 0.36 tolerated(0.05) probably_damaging(0.989) TCGA-FS-A1ZT-06 3 142031492 142031492 G A XRN1 Missense_Mutation p.P1589L 0.34 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-FS-A1ZT-06 3 172472443 172472443 T A ECT2 Nonsense_Mutation p.Y41* 0.35 TCGA-FS-A1ZT-06 3 38663950 38663950 G A SCN5A Silent p.I141I 0.26 TCGA-FS-A1ZT-06 3 38743504 38743504 C T SCN10A Missense_Mutation p.V1495M 0.28 tolerated(0.08) possibly_damaging(0.84) TCGA-FS-A1ZT-06 3 38783935 38783935 C T SCN10A Nonsense_Mutation p.W651* 0.34 TCGA-FS-A1ZT-06 3 38938697 38938697 G A SCN11A Missense_Mutation p.A681V 0.46 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZT-06 3 42299634 42299634 C T CCK Missense_Mutation p.D102N 0.30 deleterious(0) probably_damaging(0.95) TCGA-FS-A1ZT-06 3 49899546 49899546 C T CAMKV Silent p.K53K 0.38 TCGA-FS-A1ZT-06 3 51929003 51929003 C T IQCF1 Missense_Mutation p.R174K 0.34 tolerated(0.14) benign(0.288) TCGA-FS-A1ZT-06 3 53820920 53820920 C T CACNA1D Missense_Mutation p.R1642W 0.19 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZT-06 4 100475031 100475031 G A TRMT10A Missense_Mutation p.L186F 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZT-06 4 142053624 142053624 G A RNF150 Silent p.R113R 0.29 TCGA-FS-A1ZT-06 4 169049311 169049311 G A ANXA10 Missense_Mutation p.G32E 0.45 deleterious(0.01) benign(0.367) TCGA-FS-A1ZT-06 4 169197182 169197182 G A DDX60 Missense_Mutation p.S710F 0.34 deleterious(0.02) benign(0.078) TCGA-FS-A1ZT-06 4 187455191 187455191 C T MTNR1A Silent p.R235R 0.27 TCGA-FS-A1ZT-06 4 188924222 188924222 A T ZFP42 Missense_Mutation p.E87D 0.26 tolerated(0.16) benign(0.023) TCGA-FS-A1ZT-06 4 70505018 70505018 C T UGT2A2 Nonsense_Mutation p.W114* 0.29 TCGA-FS-A1ZT-06 4 71114847 71114847 C T CSN3 Missense_Mutation p.P74S 0.46 tolerated(0.12) possibly_damaging(0.876) TCGA-FS-A1ZT-06 4 84375049 84375049 T C HELQ Missense_Mutation p.E116G 0.31 tolerated_low_confidence(0.27) benign(0.02) TCGA-FS-A1ZT-06 5 13737604 13737604 C T DNAH5 Missense_Mutation p.E3738K 0.36 possibly_damaging(0.621) TCGA-FS-A1ZT-06 5 140176128 140176128 G A PCDHA2 Missense_Mutation p.E527K 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.68) TCGA-FS-A1ZT-06 5 140207820 140207820 C T PCDHA6 Silent p.I48I 0.26 TCGA-FS-A1ZT-06 5 148207303 148207303 C T ADRB2 Silent p.I303I 0.26 TCGA-FS-A1ZT-06 5 16091177 16091177 G A MARCH11 Missense_Mutation p.S236F 0.50 deleterious(0) probably_damaging(0.929) TCGA-FS-A1ZT-06 5 167674680 167674680 T A TENM2 Missense_Mutation p.L2246M 0.33 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZT-06 5 176396235 176396235 T A UIMC1 Missense_Mutation p.N174I 0.13 deleterious(0.02) possibly_damaging(0.857) TCGA-FS-A1ZT-06 5 176820745 176820745 A T SLC34A1 Silent p.G329G 0.32 TCGA-FS-A1ZT-06 5 23527260 23527260 G A PRDM9 Missense_Mutation p.G688E 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-FS-A1ZT-06 5 31294195 31294195 G A CDH6 Missense_Mutation p.E119K 0.23 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZT-06 5 31323076 31323076 G A CDH6 Silent p.R678R 0.24 TCGA-FS-A1ZT-06 5 32074487 32074487 G A PDZD2 Missense_Mutation p.R1092H 0.17 tolerated(0.58) benign(0) TCGA-FS-A1ZT-06 5 36225643 36225643 C T NADK2 Splice_Site p.X187_splice 0.27 TCGA-FS-A1ZT-06 5 61642984 61642984 C T KIF2A Missense_Mutation p.S31F 0.25 deleterious(0.01) benign(0.106) TCGA-FS-A1ZT-06 5 68665386 68665386 G A TAF9 Intron 0.25 TCGA-FS-A1ZT-06 5 80390675 80390675 C T RASGRF2 Missense_Mutation p.S540F 0.20 tolerated(0.14) benign(0.001) TCGA-FS-A1ZT-06 6 116837194 116837194 C T FAM26E 3'UTR 0.40 TCGA-FS-A1ZT-06 6 153296353 153296353 G A FBXO5 Silent p.F169F 0.32 TCGA-FS-A1ZT-06 6 157469765 157469765 C G ARID1B Nonsense_Mutation p.Y853* 0.32 TCGA-FS-A1ZT-06 6 170176106 170176106 C T ERMARD Missense_Mutation p.H489Y 0.23 tolerated(0.71) benign(0.02) TCGA-FS-A1ZT-06 6 42237398 42237398 G C TRERF1 5'UTR 0.61 TCGA-FS-A1ZT-06 6 47682712 47682712 T A GPR115 Silent p.V577V 0.60 TCGA-FS-A1ZT-06 6 56044586 56044586 C T COL21A1 Missense_Mutation p.D144N 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZT-06 6 56047428 56047428 C T COL21A1 5'UTR 0.40 TCGA-FS-A1ZT-06 7 141341105 141341105 C A AGK Missense_Mutation p.P262T 0.19 deleterious(0.03) benign(0.394) TCGA-FS-A1ZT-06 7 44228566 44228566 A C GCK 5'UTR 0.27 TCGA-FS-A1ZT-06 7 44578514 44578514 G A NPC1L1 Silent p.F494F 0.23 TCGA-FS-A1ZT-06 7 81381481 81381481 G A HGF Missense_Mutation p.P194S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1ZT-06 7 82584204 82584204 G A PCLO Missense_Mutation p.S2022F 0.37 unknown(0) TCGA-FS-A1ZT-06 7 82996917 82996917 G T SEMA3E Missense_Mutation p.H771Q 0.22 tolerated(0.34) benign(0.043) TCGA-FS-A1ZT-06 7 86415890 86415890 G A GRM3 Missense_Mutation p.R261Q 0.37 tolerated(0.18) benign(0.016) TCGA-FS-A1ZT-06 8 110493686 110493686 G A PKHD1L1 Missense_Mutation p.E3118K 0.40 deleterious(0.01) probably_damaging(0.95) TCGA-FS-A1ZT-06 8 12958068 12958068 G A DLC1 Missense_Mutation p.S593F 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZT-06 8 39782806 39782806 G A IDO1 Missense_Mutation p.E258K 0.22 tolerated(1) benign(0.001) TCGA-FS-A1ZT-06 8 57228679 57228679 C T SDR16C5 Silent p.G76G 0.72 TCGA-FS-A1ZT-06 8 77616573 77616573 G A ZFHX4 Missense_Mutation p.E84K 0.45 possibly_damaging(0.502) TCGA-FS-A1ZT-06 8 77618318 77618318 G A ZFHX4 Silent p.E665E 0.31 TCGA-FS-A1ZT-06 9 107267485 107267485 C T OR13F1 Silent p.F314F 0.41 TCGA-FS-A1ZT-06 9 116083795 116083795 G A WDR31 Missense_Mutation p.L212F 0.34 deleterious(0) benign(0.071) TCGA-FS-A1ZT-06 9 122075647 122075647 C T BRINP1 5'UTR 0.40 TCGA-FS-A1ZT-06 9 125281684 125281684 G A OR1J4 Missense_Mutation p.D89N 0.31 tolerated_low_confidence(0.32) benign(0.001) TCGA-FS-A1ZT-06 9 125315479 125315479 G A OR1N2 Missense_Mutation p.E11K 0.44 tolerated_low_confidence(0.71) benign(0) TCGA-FS-A1ZT-06 9 134350033 134350034 - GC PRRC2B Frame_Shift_Ins p.G841Qfs*108 0.10 TCGA-FS-A1ZT-06 9 135975748 135975748 G A RALGDS Missense_Mutation p.P826S 0.44 deleterious(0.04) unknown(0) TCGA-FS-A1ZT-06 9 140389554 140389554 G A PNPLA7 Silent p.A686A 0.29 TCGA-FS-A1ZT-06 9 140648681 140648681 C T EHMT1 Missense_Mutation p.P436L 0.27 deleterious(0.03) possibly_damaging(0.662) TCGA-FS-A1ZT-06 9 22447722 22447722 G A DMRTA1 Missense_Mutation p.E220K 0.57 tolerated(0.58) benign(0.002) TCGA-FS-A1ZT-06 9 27169586 27169586 G A TEK Missense_Mutation p.G196E 0.34 tolerated(0.19) benign(0.095) TCGA-FS-A1ZT-06 9 32633798 32633798 G A TAF1L Missense_Mutation p.P594S 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZT-06 9 33280807 33280807 G A CHMP5 Missense_Mutation p.D204N 0.13 tolerated(0.25) benign(0.022) TCGA-FS-A1ZT-06 9 37426560 37426560 G C GRHPR Missense_Mutation p.D105H 0.29 tolerated(0.09) benign(0.081) TCGA-FS-A1ZT-06 9 79320607 79320607 T C PRUNE2 Missense_Mutation p.I2195V 0.26 tolerated(0.29) benign(0.006) TCGA-FS-A1ZT-06 X 105449720 105449720 G A MUM1L1 Missense_Mutation p.E99K 0.69 tolerated(0.22) benign(0.018) TCGA-FS-A1ZT-06 X 24229336 24229336 A G ZFX Missense_Mutation p.Y754C 0.62 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZT-06 X 31196841 31196841 G A DMD Missense_Mutation p.P3390S 0.74 possibly_damaging(0.803) TCGA-FS-A1ZT-06 X 51151078 51151078 G A CXorf67 Missense_Mutation p.V404I 0.68 tolerated(0.1) probably_damaging(0.971) TCGA-FS-A1ZT-06 X 51151079 51151079 T A CXorf67 Missense_Mutation p.V404D 0.69 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZT-06 X 75004445 75004445 C T MAGEE2 Missense_Mutation p.D148N 0.75 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZU-06 10 103917932 103917932 G A NOLC1 Missense_Mutation p.V190M 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.608) TCGA-FS-A1ZU-06 10 33196037 33196037 T C ITGB1 Intron 0.44 TCGA-FS-A1ZU-06 11 65036175 65036175 T A POLA2 Nonsense_Mutation p.L110* 0.47 TCGA-FS-A1ZU-06 11 82879917 82879917 G A PCF11 Missense_Mutation p.R847Q 0.33 tolerated(0.13) probably_damaging(0.945) TCGA-FS-A1ZU-06 12 123482052 123482052 C T PITPNM2 Missense_Mutation p.G431E 0.34 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZU-06 12 14923933 14923933 C A HIST4H4 Missense_Mutation p.G29V 0.16 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZU-06 13 111137367 111137367 C T COL4A2 Silent p.G1006G 0.27 TCGA-FS-A1ZU-06 14 105408731 105408731 C T AHNAK2 Missense_Mutation p.A4353T 0.30 benign(0.436) TCGA-FS-A1ZU-06 14 25043625 25043625 C T CTSG Silent p.T140T 0.28 TCGA-FS-A1ZU-06 14 39648305 39648305 G A PNN Missense_Mutation p.R170H 0.30 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZU-06 15 67073772 67073772 G A SMAD6 Missense_Mutation p.V464I 0.42 tolerated(0.1) possibly_damaging(0.683) TCGA-FS-A1ZU-06 15 75942635 75942635 G C SNX33 Missense_Mutation p.V398L 0.23 deleterious(0.01) benign(0.024) TCGA-FS-A1ZU-06 15 81625347 81625347 C G TMC3 Missense_Mutation p.E906Q 0.28 tolerated_low_confidence(0.26) benign(0.016) TCGA-FS-A1ZU-06 15 83226697 83226697 C T CPEB1 Missense_Mutation p.G140E 0.35 deleterious_low_confidence(0.05) benign(0.056) TCGA-FS-A1ZU-06 16 30794344 30794344 G A ZNF629 Silent p.C435C 0.44 TCGA-FS-A1ZU-06 17 34883406 34883407 CT - MYO19 Frame_Shift_Del p.E92Vfs*19 0.31 TCGA-FS-A1ZU-06 17 51901912 51901912 C T KIF2B Silent p.S506S 0.17 TCGA-FS-A1ZU-06 19 44271811 44271811 G A KCNN4 Missense_Mutation p.R390W 0.15 deleterious(0) possibly_damaging(0.614) TCGA-FS-A1ZU-06 19 55047086 55047086 G A KIR3DX1 Missense_Mutation p.D211N 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZU-06 19 55176302 55176302 T G LILRB4 Splice_Site p.X236_splice 0.55 TCGA-FS-A1ZU-06 1 176709190 176709190 C A PAPPA2 Missense_Mutation p.H1337N 0.16 tolerated(0.2) benign(0.002) TCGA-FS-A1ZU-06 1 180885324 180885324 G A KIAA1614 Missense_Mutation p.V29M 0.20 tolerated(1) benign(0.004) TCGA-FS-A1ZU-06 1 201286702 201286702 C T PKP1 Silent p.V283V 0.12 TCGA-FS-A1ZU-06 1 220777410 220777410 T G MARK1 Silent p.G142G 0.12 TCGA-FS-A1ZU-06 1 38005830 38005830 C T SNIP1 Missense_Mutation p.R285Q 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZU-06 1 55280584 55280584 T C C1orf177 Intron 0.17 TCGA-FS-A1ZU-06 1 75055422 75055422 T G C1orf173 Missense_Mutation p.K690T 0.47 deleterious(0.02) benign(0.275) TCGA-FS-A1ZU-06 22 46654923 46654923 T C PKDREJ Missense_Mutation p.S1433G 0.14 tolerated(0.07) probably_damaging(0.989) TCGA-FS-A1ZU-06 2 219447748 219447748 T C RQCD1 Missense_Mutation p.S87P 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-FS-A1ZU-06 3 101022994 101022994 A T IMPG2 Missense_Mutation p.M166K 0.27 tolerated(0.42) benign(0.018) TCGA-FS-A1ZU-06 3 130405181 130405181 C T PIK3R4 Missense_Mutation p.V1117M 0.24 tolerated(0.08) probably_damaging(0.99) TCGA-FS-A1ZU-06 3 132440872 132440873 AC - NPHP3 Frame_Shift_Del p.L109Ffs*53 0.24 TCGA-FS-A1ZU-06 3 13438970 13438970 C T NUP210 Missense_Mutation p.R108H 0.42 deleterious(0.04) benign(0.391) TCGA-FS-A1ZU-06 3 167183148 167183148 C T SERPINI2 Missense_Mutation p.E238K 0.06 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZU-06 3 189349361 189349361 C A TP63 Silent p.I19I 0.44 TCGA-FS-A1ZU-06 3 42728091 42728091 C T KLHL40 Silent p.G327G 0.26 TCGA-FS-A1ZU-06 4 158059985 158059985 G A GLRB Missense_Mutation p.R212Q 0.15 tolerated(0.07) benign(0.004) TCGA-FS-A1ZU-06 4 188924150 188924150 C T ZFP42 Silent p.L63L 0.22 TCGA-FS-A1ZU-06 5 140590562 140590562 G C PCDHB12 Missense_Mutation p.A695P 0.21 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FS-A1ZU-06 5 80762838 80762838 G T SSBP2 Missense_Mutation p.P198H 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZU-06 6 36288968 36288968 T G C6orf222 Silent p.A544A 0.91 TCGA-FS-A1ZU-06 7 10977742 10977742 T A NDUFA4 Missense_Mutation p.K55I 0.26 deleterious(0) probably_damaging(0.928) TCGA-FS-A1ZU-06 7 122342619 122342619 G A RNF148 Silent p.F62F 0.33 TCGA-FS-A1ZU-06 7 25176283 25176283 G A C7orf31 Missense_Mutation p.P361S 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-FS-A1ZU-06 7 6439807 6439807 T G RAC1 Missense_Mutation p.N111K 0.29 deleterious(0.01) possibly_damaging(0.848) TCGA-FS-A1ZU-06 7 77325804 77325804 C T RSBN1L Silent p.S6S 0.82 TCGA-FS-A1ZU-06 8 1624758 1624758 C T DLGAP2 Silent p.V674V 0.75 TCGA-FS-A1ZU-06 8 3081268 3081268 G A CSMD1 Silent p.I1489I 0.26 TCGA-FS-A1ZU-06 9 109689800 109689800 C T ZNF462 Missense_Mutation p.R1203W 0.57 probably_damaging(0.976) TCGA-FS-A1ZU-06 9 125681625 125681625 T C ZBTB26 Missense_Mutation p.K197E 0.25 tolerated(0.72) benign(0.07) TCGA-FS-A1ZU-06 9 2161877 2161877 C T SMARCA2 Silent p.I1391I 0.36 TCGA-FS-A1ZU-06 9 95072931 95072932 - T NOL8 Frame_Shift_Ins p.L834Afs*3 0.24 TCGA-FS-A1ZU-06 9 95993181 95993181 G T WNK2 Missense_Mutation p.R289L 0.80 unknown(0) TCGA-FS-A1ZU-06 X 1746653 1746653 G A ASMT Silent p.T144T 0.06 TCGA-FS-A1ZU-06 X 84526576 84526576 G T ZNF711 Missense_Mutation p.L676F 0.27 tolerated(1) benign(0.005) TCGA-FS-A1ZW-06 10 100374730 100374730 G A HPSE2 Silent p.V417V 0.32 TCGA-FS-A1ZW-06 10 103988322 103988322 C T ELOVL3 Missense_Mutation p.L128F 0.39 deleterious(0.02) possibly_damaging(0.5) TCGA-FS-A1ZW-06 10 105200065 105200065 C A PDCD11 Missense_Mutation p.N1389K 0.32 tolerated(0.98) benign(0.002) TCGA-FS-A1ZW-06 10 106124613 106124613 G A CCDC147 Missense_Mutation p.R188Q 0.15 tolerated(0.3) benign(0.003) TCGA-FS-A1ZW-06 10 115594905 115594905 G T DCLRE1A 3'UTR 0.30 TCGA-FS-A1ZW-06 10 116225525 116225525 G A ABLIM1 Missense_Mutation p.S458F 0.17 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZW-06 10 119049715 119049715 G A PDZD8 Nonsense_Mutation p.R415* 0.26 TCGA-FS-A1ZW-06 10 124189307 124189307 C T PLEKHA1 Silent p.F356F 0.22 TCGA-FS-A1ZW-06 10 125622149 125622149 C T CPXM2 Missense_Mutation p.R165Q 0.27 deleterious(0) probably_damaging(0.968) TCGA-FS-A1ZW-06 10 12802951 12802951 T A CAMK1D Missense_Mutation p.S102T 0.36 tolerated(0.79) benign(0.004) TCGA-FS-A1ZW-06 10 135025336 135025336 C T KNDC1 Missense_Mutation p.L1404F 0.16 tolerated(0.17) benign(0.013) TCGA-FS-A1ZW-06 10 24669797 24669797 G A KIAA1217 Splice_Site p.X119_splice 0.24 TCGA-FS-A1ZW-06 10 27434373 27434373 G A YME1L1 Silent p.F162F 0.27 TCGA-FS-A1ZW-06 10 28276346 28276346 C T ARMC4 Silent p.G117G 0.24 TCGA-FS-A1ZW-06 10 37442579 37442579 G A ANKRD30A Missense_Mutation p.G540E 0.11 tolerated(0.33) probably_damaging(0.972) TCGA-FS-A1ZW-06 10 43595906 43595906 G A RET Splice_Site p.X25_splice 0.37 TCGA-FS-A1ZW-06 10 44053482 44053482 G A ZNF239 Nonsense_Mutation p.R16* 0.28 TCGA-FS-A1ZW-06 10 46965844 46965844 G A SYT15 Silent p.S231S 0.10 TCGA-FS-A1ZW-06 10 48390452 48390452 C T RBP3 Silent p.E142E 0.28 TCGA-FS-A1ZW-06 10 50594858 50594858 C T DRGX Missense_Mutation p.G99E 0.20 deleterious(0.01) benign(0.053) TCGA-FS-A1ZW-06 10 52086980 52086980 G A SGMS1 Silent p.F242F 0.19 TCGA-FS-A1ZW-06 10 52103795 52103795 G A SGMS1 Missense_Mutation p.P27L 0.27 tolerated(0.91) benign(0.025) TCGA-FS-A1ZW-06 10 61831288 61831288 G A ANK3 Silent p.I3117I 0.25 TCGA-FS-A1ZW-06 10 62149311 62149311 G A ANK3 5'UTR 0.18 TCGA-FS-A1ZW-06 10 64573365 64573365 C T EGR2 Missense_Mutation p.E345K 0.22 deleterious(0) benign(0.299) TCGA-FS-A1ZW-06 10 75003031 75003031 G A DNAJC9 3'UTR 0.29 TCGA-FS-A1ZW-06 10 75634172 75634172 G A CAMK2G Silent p.L16L 0.38 TCGA-FS-A1ZW-06 10 7657990 7657990 G A ITIH5 Silent p.F298F 0.28 TCGA-FS-A1ZW-06 10 84711264 84711264 C T NRG3 Missense_Mutation p.S365L 0.38 deleterious(0.02) possibly_damaging(0.74) TCGA-FS-A1ZW-06 10 89527456 89527456 G A ATAD1 Silent p.L269L 0.18 TCGA-FS-A1ZW-06 10 96454814 96454814 C T CYP2C18 Silent p.L208L 0.31 TCGA-FS-A1ZW-06 10 97990570 97990570 C T BLNK Missense_Mutation p.E62K 0.18 deleterious(0.02) possibly_damaging(0.562) TCGA-FS-A1ZW-06 11 101353770 101353770 C T TRPC6 Missense_Mutation p.E474K 0.30 tolerated(0.66) benign(0.232) TCGA-FS-A1ZW-06 11 104871020 104871020 G A CASP5 Missense_Mutation p.P320L 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 11 113660223 113660223 A G ATF4P4 RNA 0.15 TCGA-FS-A1ZW-06 11 114121302 114121302 G A ZBTB16 3'UTR 0.17 TCGA-FS-A1ZW-06 11 117253607 117253607 A T CEP164 Missense_Mutation p.D558V 0.31 tolerated(0.07) benign(0.029) TCGA-FS-A1ZW-06 11 117310610 117310610 G A DSCAML1 Missense_Mutation p.P1362L 0.32 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZW-06 11 117310611 117310611 G A DSCAML1 Missense_Mutation p.P1362S 0.33 deleterious(0.02) probably_damaging(0.919) TCGA-FS-A1ZW-06 11 118344862 118344877 TAGCACTGTTAAACAT - KMT2A Frame_Shift_Del p.S997Pfs*5 0.24 TCGA-FS-A1ZW-06 11 119545951 119545951 G A PVRL1 Silent p.N307N 0.24 TCGA-FS-A1ZW-06 11 123777788 123777788 C T OR8D4 Missense_Mutation p.S217L 0.27 deleterious(0) possibly_damaging(0.735) TCGA-FS-A1ZW-06 11 123848078 123848078 G A OR10S1 Silent p.S107S 0.31 TCGA-FS-A1ZW-06 11 123886461 123886461 C T OR10G4 Silent p.F60F 0.17 TCGA-FS-A1ZW-06 11 124739925 124739925 G A ROBO3 Missense_Mutation p.G243R 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 11 130011963 130011963 C T APLP2 Silent p.I728I 0.38 TCGA-FS-A1ZW-06 11 134212753 134212753 C T GLB1L2 Silent p.F64F 0.11 TCGA-FS-A1ZW-06 11 134257506 134257506 G A B3GAT1 Silent p.P16P 0.23 TCGA-FS-A1ZW-06 11 17418836 17418836 C T ABCC8 Missense_Mutation p.V1298M 0.28 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZW-06 11 18425337 18425337 T C LDHA Missense_Mutation p.V259A 0.45 deleterious(0.01) possibly_damaging(0.497) TCGA-FS-A1ZW-06 11 27147337 27147337 G A BBOX1 Missense_Mutation p.E325K 0.10 tolerated(0.09) benign(0.021) TCGA-FS-A1ZW-06 11 2924639 2924639 C T SLC22A18 Missense_Mutation p.R22W 0.17 deleterious(0.02) benign(0.033) TCGA-FS-A1ZW-06 11 293704 293704 C T ATHL1 Missense_Mutation p.P531S 0.34 deleterious(0.01) possibly_damaging(0.483) TCGA-FS-A1ZW-06 11 33743976 33743976 C T CD59 Missense_Mutation p.G6R 0.11 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZW-06 11 43283947 43283947 T C HNRNPKP3 RNA 0.17 TCGA-FS-A1ZW-06 11 46689398 46689398 C T ATG13 Silent p.V404V 0.25 TCGA-FS-A1ZW-06 11 48346903 48346903 C T OR4C3 Silent p.I137I 0.12 TCGA-FS-A1ZW-06 11 48510356 48510356 G A OR4A47 Silent p.R4R 0.23 TCGA-FS-A1ZW-06 11 50003119 50003119 C T OR4C12 Missense_Mutation p.D307N 0.38 tolerated_low_confidence(0.15) benign(0) TCGA-FS-A1ZW-06 11 5013258 5013258 G A MMP26 Silent p.G220G 0.39 TCGA-FS-A1ZW-06 11 51412062 51412062 G T OR4A5 Missense_Mutation p.L112I 0.15 tolerated_low_confidence(0.08) benign(0.125) TCGA-FS-A1ZW-06 11 5172693 5172693 G A OR52A1 Missense_Mutation p.R303C 0.13 deleterious(0.02) benign(0.028) TCGA-FS-A1ZW-06 11 5221142 5221142 A G OR51V1 Silent p.P263P 0.15 TCGA-FS-A1ZW-06 11 5269643 5269643 G A HBG1 Silent p.S130S 0.19 TCGA-FS-A1ZW-06 11 5462097 5462097 G A OR51I1 Silent p.I216I 0.09 TCGA-FS-A1ZW-06 11 5537283 5537283 C T UBQLNL Missense_Mutation p.G130E 0.32 tolerated(0.18) benign(0.088) TCGA-FS-A1ZW-06 11 55433515 55433515 G A OR4C6 Silent p.E291E 0.36 TCGA-FS-A1ZW-06 11 55579578 55579578 G A OR5L1 Missense_Mutation p.M212I 0.16 tolerated(0.26) benign(0.001) TCGA-FS-A1ZW-06 11 55890498 55890498 C T OR8H3 Missense_Mutation p.S217F 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZW-06 11 5776576 5776576 G A OR52N4 Silent p.L202L 0.15 TCGA-FS-A1ZW-06 11 58602019 58602019 A G GLYATL2 Silent p.F256F 0.31 TCGA-FS-A1ZW-06 11 5862489 5862489 G A OR52E6 Silent p.L213L 0.26 TCGA-FS-A1ZW-06 11 60059813 60059813 G A MS4A4A Missense_Mutation p.G53R 0.16 tolerated(0.58) benign(0.039) TCGA-FS-A1ZW-06 11 6007836 6007836 C T OR52L1 Missense_Mutation p.E109K 0.38 deleterious(0.03) benign(0.234) TCGA-FS-A1ZW-06 11 60708634 60708634 C T SLC15A3 Silent p.A412A 0.23 TCGA-FS-A1ZW-06 11 61732270 61732270 C T FTH1 Missense_Mutation p.A161T 0.14 deleterious(0.03) benign(0.193) TCGA-FS-A1ZW-06 11 62298653 62298653 G A AHNAK Missense_Mutation p.P1079L 0.30 probably_damaging(1) TCGA-FS-A1ZW-06 11 62747383 62747383 C T SLC22A6 Missense_Mutation p.D359N 0.16 deleterious(0.03) probably_damaging(0.958) TCGA-FS-A1ZW-06 11 62782326 62782326 G A SLC22A8 Silent p.N35N 0.37 TCGA-FS-A1ZW-06 11 62933703 62933703 G A SLC22A25 Silent p.G366G 0.43 TCGA-FS-A1ZW-06 11 64427939 64427939 C T NRXN2 Missense_Mutation p.E752K 0.39 deleterious(0) benign(0.001) TCGA-FS-A1ZW-06 11 6477540 6477540 G A TRIM3 Silent p.L472L 0.37 TCGA-FS-A1ZW-06 11 65304454 65304454 C T SCYL1 Intron 0.43 TCGA-FS-A1ZW-06 11 65715016 65715016 G A TSGA10IP RNA 0.10 TCGA-FS-A1ZW-06 11 66083855 66083855 T C CD248 Missense_Mutation p.K215R 0.19 tolerated(0.27) benign(0.254) TCGA-FS-A1ZW-06 11 66189622 66189622 C T NPAS4 Silent p.L69L 0.30 TCGA-FS-A1ZW-06 11 68125199 68125199 G A LRP5 Silent p.V190V 0.43 TCGA-FS-A1ZW-06 11 68552315 68552315 C T CPT1A Silent p.E377E 0.27 TCGA-FS-A1ZW-06 11 6977075 6977075 C T ZNF215 Silent p.F289F 0.31 TCGA-FS-A1ZW-06 11 70208214 70208214 G A PPFIA1 Missense_Mutation p.E866K 0.28 deleterious(0.01) possibly_damaging(0.75) TCGA-FS-A1ZW-06 11 7064407 7064407 G A NLRP14 Missense_Mutation p.E384K 0.34 tolerated(0.12) benign(0.209) TCGA-FS-A1ZW-06 11 71724032 71724032 T C NUMA1 Missense_Mutation p.E1506G 0.37 probably_damaging(0.999) TCGA-FS-A1ZW-06 11 73824918 73824918 G A C2CD3 Missense_Mutation p.H584Y 0.28 tolerated(0.23) probably_damaging(0.936) TCGA-FS-A1ZW-06 11 7847259 7847259 C T OR5P3 Silent p.R87R 0.18 TCGA-FS-A1ZW-06 11 7960551 7960551 C T OR10A3 Missense_Mutation p.E173K 0.21 tolerated(0.82) benign(0.042) TCGA-FS-A1ZW-06 11 82643115 82643115 C T C11orf82 Silent p.F245F 0.29 TCGA-FS-A1ZW-06 11 92532555 92532555 G A FAT3 Missense_Mutation p.D2126N 0.25 benign(0.05) TCGA-FS-A1ZW-06 11 95712443 95712443 A G MAML2 Missense_Mutation p.L1047P 0.28 unknown(0) TCGA-FS-A1ZW-06 12 108589750 108589750 G A WSCD2 Silent p.G47G 0.24 TCGA-FS-A1ZW-06 12 111951327 111951327 G A ATXN2 Silent p.S624S 0.29 TCGA-FS-A1ZW-06 12 112193538 112193538 C T ACAD10 Missense_Mutation p.R1041C 0.33 tolerated(0.07) possibly_damaging(0.682) TCGA-FS-A1ZW-06 12 118198936 118198936 C T KSR2 Missense_Mutation p.G289E 0.24 tolerated(0.16) possibly_damaging(0.844) TCGA-FS-A1ZW-06 12 120535014 120535014 A C RAB35 3'UTR 0.28 TCGA-FS-A1ZW-06 12 121614989 121614989 G A P2RX7 Missense_Mutation p.G338S 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 12 121986849 121986850 - CTGGA KDM2B Frame_Shift_Ins p.H206Sfs*4 0.20 TCGA-FS-A1ZW-06 12 124421944 124421944 T G CCDC92 Missense_Mutation p.E219D 0.32 tolerated(0.22) benign(0.023) TCGA-FS-A1ZW-06 12 129566350 129566350 C T TMEM132D Missense_Mutation p.G626D 0.40 tolerated(1) benign(0.008) TCGA-FS-A1ZW-06 12 18891276 18891276 G A CAPZA3 Missense_Mutation p.G25E 0.29 tolerated(0.09) probably_damaging(0.973) TCGA-FS-A1ZW-06 12 18891277 18891277 G A CAPZA3 Silent p.G25G 0.29 TCGA-FS-A1ZW-06 12 18891529 18891529 C T CAPZA3 Silent p.I109I 0.34 TCGA-FS-A1ZW-06 12 1943507 1943507 G A LRTM2 Missense_Mutation p.E245K 0.22 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZW-06 12 21008007 21008007 G A LST3 Missense_Mutation p.G44S 0.43 tolerated(0.86) benign(0.158) TCGA-FS-A1ZW-06 12 21446932 21446932 G A SLCO1A2 Silent p.L462L 0.32 TCGA-FS-A1ZW-06 12 21733319 21733319 G A GYS2 Missense_Mutation p.A87V 0.26 tolerated(0.29) benign(0.345) TCGA-FS-A1ZW-06 12 27175511 27175511 A G MED21 5'UTR 0.19 TCGA-FS-A1ZW-06 12 2787022 2787022 G A CACNA1C Missense_Mutation p.D1742N 0.30 tolerated(0.11) benign(0.12) TCGA-FS-A1ZW-06 12 41337963 41337963 G A CNTN1 Silent p.R558R 0.16 TCGA-FS-A1ZW-06 12 43769292 43769292 G A ADAMTS20 Missense_Mutation p.P1779L 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 12 4919429 4919429 C T KCNA6 Silent p.V74V 0.26 TCGA-FS-A1ZW-06 12 4919430 4919430 C T KCNA6 Missense_Mutation p.R75C 0.27 deleterious(0) probably_damaging(0.957) TCGA-FS-A1ZW-06 12 50045849 50045849 G A FMNL3 Silent p.G490G 0.39 TCGA-FS-A1ZW-06 12 5155058 5155058 C T KCNA5 Missense_Mutation p.P582L 0.31 deleterious_low_confidence(0.03) benign(0.002) TCGA-FS-A1ZW-06 12 52910933 52910933 C T KRT5 Missense_Mutation p.M392I 0.24 deleterious(0.04) benign(0.038) TCGA-FS-A1ZW-06 12 55794778 55794778 C T OR6C65 Missense_Mutation p.P156S 0.36 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FS-A1ZW-06 12 57317656 57317656 G A SDR9C7 Silent p.I301I 0.18 TCGA-FS-A1ZW-06 12 65460471 65460471 G A WIF1 Missense_Mutation p.P227L 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A1ZW-06 12 65847568 65847568 C T MSRB3 Missense_Mutation p.S125F 0.23 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZW-06 12 6886536 6886536 A G LAG3 Silent p.P388P 0.31 TCGA-FS-A1ZW-06 12 6954844 6954844 C T GNB3 Missense_Mutation p.S265F 0.29 deleterious(0) benign(0.164) TCGA-FS-A1ZW-06 12 7637841 7637841 G A CD163 Missense_Mutation p.P877L 0.34 tolerated(0.34) benign(0.007) TCGA-FS-A1ZW-06 12 85517990 85517990 C T LRRIQ1 Missense_Mutation p.H1234Y 0.27 deleterious(0.03) possibly_damaging(0.876) TCGA-FS-A1ZW-06 12 91348192 91348192 G A CCER1 Missense_Mutation p.R110W 0.22 tolerated(0.09) possibly_damaging(0.722) TCGA-FS-A1ZW-06 12 91545456 91545456 C T DCN Missense_Mutation p.G287E 0.35 deleterious(0) possibly_damaging(0.812) TCGA-FS-A1ZW-06 12 93100576 93100576 C T C12orf74 Missense_Mutation p.R57C 0.30 tolerated(0.05) possibly_damaging(0.687) TCGA-FS-A1ZW-06 13 101844285 101844285 G A NALCN Missense_Mutation p.H583Y 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 13 110814731 110814731 G A COL4A1 Silent p.P1436P 0.25 TCGA-FS-A1ZW-06 13 114526421 114526421 G A GAS6 Missense_Mutation p.A527V 0.32 tolerated(0.41) benign(0.002) TCGA-FS-A1ZW-06 13 28589742 28589742 C T FLT3 Missense_Mutation p.E880K 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 13 37012209 37012209 C T CCNA1 Missense_Mutation p.P184S 0.23 deleterious(0.04) probably_damaging(0.985) TCGA-FS-A1ZW-06 13 37014168 37014168 G A CCNA1 Missense_Mutation p.D316N 0.37 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZW-06 13 39263503 39263503 C T FREM2 Silent p.V674V 0.27 TCGA-FS-A1ZW-06 13 41705387 41705387 G A KBTBD6 Missense_Mutation p.R421C 0.30 tolerated(0.22) benign(0.009) TCGA-FS-A1ZW-06 13 50589901 50589901 T G KCNRG Missense_Mutation p.L91R 0.22 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZW-06 13 50589914 50589914 T A KCNRG Silent p.V95V 0.23 TCGA-FS-A1ZW-06 13 61986425 61986425 C G PCDH20 Missense_Mutation p.E603Q 0.27 deleterious(0.01) probably_damaging(0.926) TCGA-FS-A1ZW-06 13 95725490 95725490 A C ABCC4 Missense_Mutation p.C996G 0.27 tolerated(0.88) benign(0.001) TCGA-FS-A1ZW-06 13 99515291 99515291 G A DOCK9 Silent p.F1187F 0.16 TCGA-FS-A1ZW-06 14 101452462 101452462 C T SNORD114-25 RNA 0.29 TCGA-FS-A1ZW-06 14 102368210 102368210 C T PPP2R5C Missense_Mutation p.S367F 0.35 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZW-06 14 104124103 104124103 T C KLC1 Missense_Mutation p.I161T 0.38 tolerated(0.59) benign(0.002) TCGA-FS-A1ZW-06 14 104639320 104639320 C T KIF26A Missense_Mutation p.S476L 0.48 deleterious(0) probably_damaging(0.977) TCGA-FS-A1ZW-06 14 106733175 106733175 G A IGHV1-24 Missense_Mutation p.S107F 0.22 deleterious(0.03) benign(0.097) TCGA-FS-A1ZW-06 14 20344665 20344665 A T OR4K2 Missense_Mutation p.K80M 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.32 TCGA-FS-A1ZW-06 14 20926768 20926768 G A TMEM55B Missense_Mutation p.L269F 0.24 tolerated(0.17) benign(0.004) TCGA-FS-A1ZW-06 14 22356561 22356561 C T TRAV12-2 Silent p.S73S 0.29 TCGA-FS-A1ZW-06 14 24114627 24114627 C T DHRS2 3'UTR 0.50 TCGA-FS-A1ZW-06 14 24526176 24526176 C T LRRC16B Silent p.S335S 0.20 TCGA-FS-A1ZW-06 14 38723892 38723892 C T CLEC14A Missense_Mutation p.D446N 0.21 tolerated(0.15) benign(0.006) TCGA-FS-A1ZW-06 14 39645288 39645288 C T PNN Silent p.I40I 0.23 TCGA-FS-A1ZW-06 14 50074628 50074628 C T LRR1 Missense_Mutation p.P265S 0.25 deleterious(0) probably_damaging(0.961) TCGA-FS-A1ZW-06 14 63174948 63174948 C T KCNH5 Missense_Mutation p.G749R 0.36 tolerated(0.28) benign(0.167) TCGA-FS-A1ZW-06 14 70634820 70634820 G A SLC8A3 Missense_Mutation p.S107F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZW-06 14 70924293 70924293 C T ADAM21 Missense_Mutation p.S26F 0.21 tolerated(0.33) benign(0.062) TCGA-FS-A1ZW-06 14 71199523 71199523 C T MAP3K9 Missense_Mutation p.D869N 0.33 deleterious(0) probably_damaging(0.974) TCGA-FS-A1ZW-06 14 77715696 77715696 C T TMEM63C Missense_Mutation p.P645S 0.29 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZW-06 14 77732493 77732493 C T NGB 3'UTR 0.46 TCGA-FS-A1ZW-06 14 90756749 90756749 G A NRDE2 Missense_Mutation p.P682L 0.35 tolerated(0.55) benign(0.001) TCGA-FS-A1ZW-06 14 91701088 91701088 C T GPR68 Missense_Mutation p.E103K 0.26 tolerated(0.14) probably_damaging(0.933) TCGA-FS-A1ZW-06 14 94038393 94038393 C T UNC79 Missense_Mutation p.P460S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZW-06 14 94770782 94770782 G A SERPINA6 Silent p.F397F 0.31 TCGA-FS-A1ZW-06 14 94962888 94962888 G A SERPINA12 Missense_Mutation p.R243C 0.24 deleterious(0) possibly_damaging(0.851) TCGA-FS-A1ZW-06 14 94964660 94964660 G A SERPINA12 Silent p.F25F 0.33 TCGA-FS-A1ZW-06 14 95054272 95054272 C T SERPINA5 Silent p.L191L 0.27 TCGA-FS-A1ZW-06 14 95560482 95560482 G T DICER1 Missense_Mutation p.R1703S 0.20 deleterious(0) possibly_damaging(0.697) TCGA-FS-A1ZW-06 14 95932343 95932343 G A SYNE3 Silent p.I184I 0.28 TCGA-FS-A1ZW-06 15 22473081 22473081 C T IGHV4OR15-8 Missense_Mutation p.G64R 0.08 deleterious(0.03) possibly_damaging(0.699) TCGA-FS-A1ZW-06 15 23811120 23811120 C T MKRN3 Missense_Mutation p.P64L 0.25 deleterious(0.05) benign(0.421) TCGA-FS-A1ZW-06 15 26806142 26806142 C T GABRB3 Silent p.Q339Q 0.28 TCGA-FS-A1ZW-06 15 28391446 28391446 C T HERC2 Missense_Mutation p.E3649K 0.26 probably_damaging(0.999) TCGA-FS-A1ZW-06 15 35083465 35083485 AGTTGTTTCATGGATGCCAGC - ACTC1 In_Frame_Del p.A274_T280del 0.09 TCGA-FS-A1ZW-06 15 38852064 38852064 C T RASGRP1 Missense_Mutation p.A60T 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-FS-A1ZW-06 15 39874765 39874765 C T THBS1 Missense_Mutation p.L147F 0.42 deleterious(0.03) benign(0.018) TCGA-FS-A1ZW-06 15 42132422 42132422 G A PLA2G4B Missense_Mutation p.D257N 0.21 deleterious(0.02) possibly_damaging(0.886) TCGA-FS-A1ZW-06 15 43699539 43699539 C T TP53BP1 3'UTR 0.31 TCGA-FS-A1ZW-06 15 45389470 45389470 C T DUOX2 Silent p.E1271E 0.27 TCGA-FS-A1ZW-06 15 45981393 45981393 C T SQRDL Silent p.L425L 0.25 TCGA-FS-A1ZW-06 15 48057313 48057313 C T SEMA6D Intron 0.40 TCGA-FS-A1ZW-06 15 49882204 49882204 C T FAM227B Missense_Mutation p.D36N 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-FS-A1ZW-06 15 52497174 52497174 C T MYO5C Missense_Mutation p.E1570K 0.31 deleterious(0.01) benign(0.425) TCGA-FS-A1ZW-06 15 52517715 52517715 G A MYO5C Silent p.F1074F 0.31 TCGA-FS-A1ZW-06 15 55912203 55912203 G A PRTG 3'UTR 0.34 TCGA-FS-A1ZW-06 15 65153749 65153749 C T AC069368.3 Missense_Mutation p.P153L 0.25 tolerated(0.2) probably_damaging(1) TCGA-FS-A1ZW-06 15 65892154 65892154 G A VWA9 Silent p.F91F 0.32 TCGA-FS-A1ZW-06 15 68600027 68600027 C T ITGA11 Missense_Mutation p.S1061N 0.26 deleterious(0.03) possibly_damaging(0.862) TCGA-FS-A1ZW-06 15 76496435 76496435 G A C15orf27 Missense_Mutation p.D459N 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.9) TCGA-FS-A1ZW-06 15 85411675 85411675 G A ALPK3 Silent p.Q1904Q 0.31 TCGA-FS-A1ZW-06 15 85411676 85411676 G A ALPK3 Missense_Mutation p.G1905S 0.28 tolerated_low_confidence(0.05) benign(0.327) TCGA-FS-A1ZW-06 15 90892025 90892025 C T GABARAPL3 3'UTR 0.44 TCGA-FS-A1ZW-06 15 91354460 91354460 C T BLM Silent p.S1300S 0.24 TCGA-FS-A1ZW-06 16 1129746 1129746 C T SSTR5 Missense_Mutation p.S293F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 16 1449478 1449478 C T UNKL Missense_Mutation p.E211K 0.32 deleterious(0) possibly_damaging(0.893) TCGA-FS-A1ZW-06 16 19451758 19451758 G A TMC5 Missense_Mutation p.R133Q 0.34 tolerated_low_confidence(0.31) benign(0.005) TCGA-FS-A1ZW-06 16 19580782 19580782 G A C16orf62 Missense_Mutation p.G141R 0.42 deleterious(0.03) possibly_damaging(0.816) TCGA-FS-A1ZW-06 16 20043519 20043519 G A GPR139 Silent p.F200F 0.29 TCGA-FS-A1ZW-06 16 21136654 21136654 T G DNAH3 Missense_Mutation p.K416Q 0.12 deleterious(0.05) benign(0.091) TCGA-FS-A1ZW-06 16 21136655 21136655 C T DNAH3 Silent p.R415R 0.12 TCGA-FS-A1ZW-06 16 22269960 22269960 C T EEF2K Missense_Mutation p.S392F 0.19 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZW-06 16 2285568 2285568 G A E4F1 Missense_Mutation p.V784I 0.42 deleterious(0.04) possibly_damaging(0.556) TCGA-FS-A1ZW-06 16 23722330 23722330 G A ERN2 Missense_Mutation p.L83F 0.14 tolerated(0.25) benign(0.014) TCGA-FS-A1ZW-06 16 24226117 24226117 A T PRKCB Nonsense_Mutation p.K668* 0.33 TCGA-FS-A1ZW-06 16 24268286 24268286 G A CACNG3 Missense_Mutation p.G71R 0.41 deleterious(0.03) probably_damaging(0.982) TCGA-FS-A1ZW-06 16 24372957 24372957 G A CACNG3 Missense_Mutation p.E241K 0.33 tolerated(0.08) benign(0.374) TCGA-FS-A1ZW-06 16 24583080 24583080 C T RBBP6 Missense_Mutation p.P1565S 0.19 tolerated_low_confidence(0.63) unknown(0) TCGA-FS-A1ZW-06 16 26147478 26147478 G A HS3ST4 Missense_Mutation p.R427K 0.34 tolerated(0.17) possibly_damaging(0.523) TCGA-FS-A1ZW-06 16 29923187 29923187 G A KCTD13 Missense_Mutation p.P169L 0.34 deleterious(0) probably_damaging(0.932) TCGA-FS-A1ZW-06 16 30941595 30941595 C T FBXL19 Missense_Mutation p.R351W 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-FS-A1ZW-06 16 3108256 3108256 G A MMP25 Missense_Mutation p.E361K 0.27 tolerated(0.37) probably_damaging(0.912) TCGA-FS-A1ZW-06 16 31427542 31427542 C T ITGAD Silent p.F764F 0.19 TCGA-FS-A1ZW-06 16 31437362 31437362 G A ITGAD Silent p.K1133K 0.28 TCGA-FS-A1ZW-06 16 3639611 3639611 G A SLX4 Missense_Mutation p.P1343L 0.21 tolerated(0.17) benign(0.037) TCGA-FS-A1ZW-06 16 46726457 46726457 G A ORC6 Missense_Mutation p.S120N 0.33 deleterious(0.03) benign(0.423) TCGA-FS-A1ZW-06 16 4872923 4872923 C T GLYR1 Missense_Mutation p.D212N 0.36 tolerated(0.25) benign(0) TCGA-FS-A1ZW-06 16 49670785 49670785 G A ZNF423 Missense_Mutation p.R760C 0.34 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZW-06 16 57552091 57552091 C T CCDC102A Silent p.R379R 0.34 TCGA-FS-A1ZW-06 16 57685239 57685239 C T GPR56 Silent p.A64A 0.29 TCGA-FS-A1ZW-06 16 66436888 66436888 C T CDH5 Missense_Mutation p.P724L 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 16 66946011 66946011 C T CDH16 Silent p.E527E 0.10 TCGA-FS-A1ZW-06 16 67685733 67685733 C T RLTPR Missense_Mutation p.A858V 0.44 tolerated(0.7) benign(0.001) TCGA-FS-A1ZW-06 16 69776383 69776383 G A NOB1 Missense_Mutation p.P364L 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-FS-A1ZW-06 16 69997616 69997616 C T CLEC18A 3'UTR 0.48 TCGA-FS-A1ZW-06 16 70989289 70989289 C T HYDIN Missense_Mutation p.G2102E 0.21 benign(0.012) TCGA-FS-A1ZW-06 16 71065807 71065807 G A HYDIN Missense_Mutation p.S848F 0.10 probably_damaging(0.989) TCGA-FS-A1ZW-06 16 72174407 72174407 C T PMFBP1 Silent p.E237E 0.37 TCGA-FS-A1ZW-06 16 75564126 75564126 G A CHST5 Missense_Mutation p.P53S 0.24 tolerated(0.49) benign(0.007) TCGA-FS-A1ZW-06 16 80638393 80638393 C T CDYL2 Silent p.L471L 0.18 TCGA-FS-A1ZW-06 16 84438821 84438821 G A ATP2C2 Missense_Mutation p.E100K 0.40 deleterious(0.01) possibly_damaging(0.746) TCGA-FS-A1ZW-06 16 9943662 9943662 C T GRIN2A Missense_Mutation p.E427K 0.19 deleterious(0.01) benign(0.12) TCGA-FS-A1ZW-06 17 10223547 10223547 G A MYH13 Missense_Mutation p.L1091F 0.36 tolerated(0.15) benign(0.132) TCGA-FS-A1ZW-06 17 10366196 10366196 G A MYH4 Silent p.L332L 0.21 TCGA-FS-A1ZW-06 17 10429959 10429959 C T MYH2 Missense_Mutation p.E1382K 0.33 deleterious(0) benign(0.323) TCGA-FS-A1ZW-06 17 11622780 11622780 C T DNAH9 Silent p.F1894F 0.18 TCGA-FS-A1ZW-06 17 15492143 15492143 C T CDRT1 3'UTR 0.36 TCGA-FS-A1ZW-06 17 15539401 15539401 C T TRIM16 Silent p.K266K 0.16 TCGA-FS-A1ZW-06 17 16455044 16455044 G A ZNF287 3'UTR 0.50 TCGA-FS-A1ZW-06 17 19316290 19316290 C T RNF112 Missense_Mutation p.R141C 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-FS-A1ZW-06 17 20361578 20361578 G A LGALS9B Missense_Mutation p.P84L 0.35 tolerated(0.13) benign(0.055) TCGA-FS-A1ZW-06 17 21215489 21215489 C T MAP2K3 Silent p.S270S 0.25 TCGA-FS-A1ZW-06 17 25974374 25974374 C T LGALS9 Silent p.R279R 0.18 TCGA-FS-A1ZW-06 17 263944 263944 C T C17orf97 3'UTR 0.25 TCGA-FS-A1ZW-06 17 26671537 26671537 C T TNFAIP1 Silent p.L288L 0.18 TCGA-FS-A1ZW-06 17 26943163 26943163 G A KIAA0100 Missense_Mutation p.S2114F 0.26 deleterious(0.02) possibly_damaging(0.72) TCGA-FS-A1ZW-06 17 27448924 27448924 A C MYO18A Missense_Mutation p.V380G 0.27 deleterious(0) possibly_damaging(0.505) TCGA-FS-A1ZW-06 17 28887652 28887652 C T TBC1D29 Silent p.T32T 0.23 TCGA-FS-A1ZW-06 17 2995652 2995652 G A OR1D2 Silent p.F213F 0.17 TCGA-FS-A1ZW-06 17 3030147 3030147 C T OR1G1 Silent p.G233G 0.20 TCGA-FS-A1ZW-06 17 3594945 3594945 G A P2RX5 Missense_Mutation p.P94L 0.35 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZW-06 17 36485713 36485713 C T GPR179 Missense_Mutation p.E1247K 0.25 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZW-06 17 36499539 36499539 C T GPR179 Missense_Mutation p.G45E 0.10 tolerated(0.15) benign(0.055) TCGA-FS-A1ZW-06 17 38068655 38068655 G A GSDMB Nonsense_Mutation p.Q111* 0.35 TCGA-FS-A1ZW-06 17 38907543 38907543 G C KRT25 Missense_Mutation p.N235K 0.19 deleterious(0.04) probably_damaging(0.982) TCGA-FS-A1ZW-06 17 38907544 38907544 T A KRT25 Missense_Mutation p.N235I 0.20 deleterious(0) probably_damaging(0.97) TCGA-FS-A1ZW-06 17 39643395 39643395 C T KRT36 Missense_Mutation p.E339K 0.34 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZW-06 17 40323852 40323852 G A KCNH4 Silent p.I383I 0.33 TCGA-FS-A1ZW-06 17 41370020 41370020 C T TMEM106A 3'UTR 0.50 TCGA-FS-A1ZW-06 17 41720979 41720979 C A MEOX1 Missense_Mutation p.K173N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 17 41926251 41926251 C T CD300LG Silent p.F123F 0.31 TCGA-FS-A1ZW-06 17 42428479 42428479 C T GRN Silent p.L261L 0.18 TCGA-FS-A1ZW-06 17 42452071 42452071 G A ITGA2B Missense_Mutation p.P967S 0.33 tolerated(0.09) possibly_damaging(0.817) TCGA-FS-A1ZW-06 17 43924223 43924223 C T SPPL2C Missense_Mutation p.H651Y 0.41 deleterious_low_confidence(0.01) benign(0.335) TCGA-FS-A1ZW-06 17 44128027 44128027 G A KANSL1 Missense_Mutation p.P631L 0.37 deleterious(0) benign(0.203) TCGA-FS-A1ZW-06 17 4457109 4457109 G A MYBBP1A Missense_Mutation p.S186F 0.15 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZW-06 17 45221283 45221283 G A CDC27 Missense_Mutation p.S385L 0.32 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZW-06 17 45232057 45232057 G A CDC27 Missense_Mutation p.T313I 0.32 tolerated(0.2) benign(0.017) TCGA-FS-A1ZW-06 17 45369775 45369775 G A ITGB3 Missense_Mutation p.E511K 0.14 tolerated(0.9) benign(0.012) TCGA-FS-A1ZW-06 17 4714154 4714154 C T PLD2 Silent p.I306I 0.15 TCGA-FS-A1ZW-06 17 4872115 4872115 C T CAMTA2 Splice_Site p.X1205_splice 0.18 TCGA-FS-A1ZW-06 17 48768580 48768580 C T ABCC3 3'UTR 0.55 TCGA-FS-A1ZW-06 17 5048705 5048705 G A USP6 Nonsense_Mutation p.W666* 0.18 TCGA-FS-A1ZW-06 17 56291736 56291736 G A MKS1 Silent p.I176I 0.14 TCGA-FS-A1ZW-06 17 62018757 62018757 G A SCN4A Missense_Mutation p.P1629S 0.13 deleterious(0.04) benign(0.225) TCGA-FS-A1ZW-06 17 62081054 62081054 C T ICAM2 Missense_Mutation p.G200D 0.14 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZW-06 17 62504805 62504805 C T CEP95 Missense_Mutation p.L39F 0.15 deleterious(0.01) benign(0.244) TCGA-FS-A1ZW-06 17 62594596 62594596 G A SMURF2 Missense_Mutation p.P35L 0.17 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 17 63206615 63206615 C T RGS9 Silent p.L433L 0.23 TCGA-FS-A1ZW-06 17 63206616 63206616 C T RGS9 Missense_Mutation p.P434S 0.24 tolerated(0.05) benign(0.129) TCGA-FS-A1ZW-06 17 65908241 65908241 C T BPTF Missense_Mutation p.P1414L 0.13 benign(0.012) TCGA-FS-A1ZW-06 17 6606305 6606305 G T SLC13A5 Missense_Mutation p.L234M 0.38 tolerated(0.17) benign(0.039) TCGA-FS-A1ZW-06 17 66980286 66980286 C T ABCA9 Silent p.T1470T 0.19 TCGA-FS-A1ZW-06 17 6928507 6928507 C T BCL6B Missense_Mutation p.R293C 0.22 tolerated(0.06) benign(0) TCGA-FS-A1ZW-06 17 7311998 7311998 C T NLGN2 Silent p.L142L 0.38 TCGA-FS-A1ZW-06 17 7318839 7318839 C T NLGN2 Silent p.I349I 0.15 TCGA-FS-A1ZW-06 17 74328391 74328391 C T PRPSAP1 Missense_Mutation p.R139K 0.15 deleterious(0) probably_damaging(0.974) TCGA-FS-A1ZW-06 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 17 7691218 7691218 C T DNAH2 Missense_Mutation p.S2215F 0.32 probably_damaging(0.998) TCGA-FS-A1ZW-06 17 80121180 80121180 C T CCDC57 Missense_Mutation p.G646R 0.40 tolerated(0.11) probably_damaging(0.961) TCGA-FS-A1ZW-06 17 80274553 80274553 G A CD7 Silent p.V129V 0.14 TCGA-FS-A1ZW-06 17 80274811 80274811 G A CD7 Silent p.S43S 0.39 TCGA-FS-A1ZW-06 17 8739899 8739899 C T PIK3R6 Silent p.Q142Q 0.36 TCGA-FS-A1ZW-06 18 14534953 14534953 C T POTEC Silent p.V288V 0.13 TCGA-FS-A1ZW-06 18 19997471 19997471 C T CTAGE1 Missense_Mutation p.E102K 0.40 deleterious(0.05) benign(0.233) TCGA-FS-A1ZW-06 18 21478738 21478738 C T LAMA3 Missense_Mutation p.H1884Y 0.38 possibly_damaging(0.808) TCGA-FS-A1ZW-06 18 21897151 21897151 G A OSBPL1A Missense_Mutation p.R278C 0.38 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZW-06 18 22057250 22057250 G A HRH4 Silent p.R299R 0.35 TCGA-FS-A1ZW-06 18 24056583 24056583 C T KCTD1 Missense_Mutation p.D69N 0.11 deleterious(0.04) possibly_damaging(0.873) TCGA-FS-A1ZW-06 18 28923481 28923481 G A DSG1 Missense_Mutation p.V586I 0.09 tolerated(0.09) benign(0.174) TCGA-FS-A1ZW-06 18 28934552 28934552 C A DSG1 Missense_Mutation p.P798Q 0.08 tolerated(0.05) benign(0.08) TCGA-FS-A1ZW-06 18 31324855 31324855 G A ASXL3 Missense_Mutation p.M1681I 0.12 benign(0.071) TCGA-FS-A1ZW-06 18 40613800 40613800 G A RIT2 Missense_Mutation p.P46S 0.31 deleterious(0.04) probably_damaging(0.992) TCGA-FS-A1ZW-06 18 66354939 66354939 A C TMX3 Missense_Mutation p.M234R 0.31 deleterious(0) benign(0.039) TCGA-FS-A1ZW-06 18 9258394 9258394 A G ANKRD12 Missense_Mutation p.Y1710C 0.10 tolerated_low_confidence(0.07) benign(0.008) TCGA-FS-A1ZW-06 19 10748390 10748390 C T SLC44A2 Silent p.F554F 0.43 TCGA-FS-A1ZW-06 19 13928164 13928164 C T ZSWIM4 Missense_Mutation p.P439S 0.34 tolerated(0.71) unknown(0) TCGA-FS-A1ZW-06 19 15225981 15225981 G A ILVBL 3'UTR 0.26 TCGA-FS-A1ZW-06 19 16643489 16643489 C T CHERP Silent p.R198R 0.41 TCGA-FS-A1ZW-06 19 20215074 20215074 C T ZNF90 Silent p.A10A 0.42 TCGA-FS-A1ZW-06 19 22940944 22940944 C T ZNF99 Silent p.G589G 0.58 TCGA-FS-A1ZW-06 19 36205566 36205566 G A ZBTB32 Missense_Mutation p.G13D 0.39 deleterious(0) possibly_damaging(0.843) TCGA-FS-A1ZW-06 19 38673332 38673332 G A SIPA1L3 Missense_Mutation p.R1461K 0.46 tolerated(1) benign(0.001) TCGA-FS-A1ZW-06 19 43708061 43708061 C T PSG4 Missense_Mutation p.G136E 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 19 45281419 45281419 G A CBLC Silent p.G77G 0.45 TCGA-FS-A1ZW-06 19 49912493 49912493 G A CCDC155 Missense_Mutation p.E367K 0.32 tolerated(1) benign(0.001) TCGA-FS-A1ZW-06 19 51767249 51767249 G A SIGLECL1 5'UTR 0.47 TCGA-FS-A1ZW-06 19 51958926 51958926 C T SIGLEC8 Missense_Mutation p.G266E 0.32 tolerated(0.74) benign(0.079) TCGA-FS-A1ZW-06 19 54137815 54137815 G A DPRX Missense_Mutation p.R20Q 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A1ZW-06 19 54261542 54261542 C T MIR1283-2 RNA 0.41 TCGA-FS-A1ZW-06 19 55144687 55144687 G A LILRB1 Silent p.G393G 0.28 TCGA-FS-A1ZW-06 19 55351130 55351130 G A KIR2DS4 Silent p.V206V 0.52 TCGA-FS-A1ZW-06 19 56369277 56369277 C T NLRP4 Missense_Mutation p.S173L 0.45 tolerated(0.14) benign(0.09) TCGA-FS-A1ZW-06 19 56443675 56443675 C T NLRP13 Translation_Start_Site p.M1? 0.57 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-FS-A1ZW-06 19 57327691 57327691 G A PEG3 Missense_Mutation p.H707Y 0.52 tolerated(0.3) possibly_damaging(0.863) TCGA-FS-A1ZW-06 19 6418802 6418802 G A KHSRP Nonsense_Mutation p.Q231* 0.49 TCGA-FS-A1ZW-06 19 6454590 6454590 G A SLC25A23 Missense_Mutation p.R208C 0.64 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 19 6750053 6750053 G A TRIP10 Silent p.L401L 0.42 TCGA-FS-A1ZW-06 19 8563167 8563167 C T PRAM1 Missense_Mutation p.R480Q 0.49 tolerated(0.26) benign(0.056) TCGA-FS-A1ZW-06 19 8564341 8564341 C T PRAM1 Silent p.K117K 0.44 TCGA-FS-A1ZW-06 19 8841730 8841730 C T OR2Z1 Silent p.L114L 0.41 TCGA-FS-A1ZW-06 19 9048071 9048071 G A MUC16 Missense_Mutation p.S11187F 0.49 benign(0.039) TCGA-FS-A1ZW-06 19 9049971 9049971 G A MUC16 Missense_Mutation p.P10554S 0.38 possibly_damaging(0.803) TCGA-FS-A1ZW-06 19 9070705 9070705 G A MUC16 Missense_Mutation p.P5581S 0.42 unknown(0) TCGA-FS-A1ZW-06 19 9226256 9226256 G A OR7G1 Missense_Mutation p.L62F 0.41 tolerated(1) benign(0.001) TCGA-FS-A1ZW-06 1 103427818 103427818 C T COL11A1 Missense_Mutation p.D1010N 0.32 unknown(0) TCGA-FS-A1ZW-06 1 10364266 10364266 G A KIF1B Intron 0.29 TCGA-FS-A1ZW-06 1 110593614 110593614 C T STRIP1 Missense_Mutation p.L665F 0.32 deleterious(0.01) benign(0.191) TCGA-FS-A1ZW-06 1 111490704 111490704 G A LRIF1 Silent p.F729F 0.29 TCGA-FS-A1ZW-06 1 112042689 112042689 G A ADORA3 Intron 0.13 TCGA-FS-A1ZW-06 1 114380974 114380974 C T PTPN22 Missense_Mutation p.E350K 0.31 tolerated(0.34) benign(0.02) TCGA-FS-A1ZW-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.31 deleterious(0.01) benign(0.045) TCGA-FS-A1ZW-06 1 115428188 115428188 G A SYCP1 Missense_Mutation p.E315K 0.35 tolerated(0.77) benign(0.21) TCGA-FS-A1ZW-06 1 115527450 115527450 T G SYCP1 Missense_Mutation p.F888L 0.23 tolerated(1) possibly_damaging(0.865) TCGA-FS-A1ZW-06 1 115615589 115615589 G A TSPAN2 Missense_Mutation p.R37W 0.16 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZW-06 1 119958096 119958096 C T HSD3B2 Silent p.I18I 0.33 TCGA-FS-A1ZW-06 1 1262229 1262229 G A GLTPD1 5'UTR 0.38 TCGA-FS-A1ZW-06 1 12854298 12854298 G A PRAMEF1 Silent p.R174R 0.09 TCGA-FS-A1ZW-06 1 12954470 12954470 C T PRAMEF10 Missense_Mutation p.M271I 0.12 tolerated(0.18) benign(0.022) TCGA-FS-A1ZW-06 1 144877207 144877207 C T PDE4DIP Missense_Mutation p.E1494K 0.15 deleterious(0) possibly_damaging(0.582) TCGA-FS-A1ZW-06 1 149916096 149916096 G A OTUD7B Missense_Mutation p.P731L 0.32 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-FS-A1ZW-06 1 151079543 151079543 C T GABPB2 Missense_Mutation p.S256F 0.28 deleterious(0) possibly_damaging(0.602) TCGA-FS-A1ZW-06 1 151384265 151384265 G A POGZ Intron 0.14 TCGA-FS-A1ZW-06 1 152277516 152277516 G A FLG Silent p.S3282S 0.30 TCGA-FS-A1ZW-06 1 153004903 153004903 C T SPRR1B Missense_Mutation p.P28S 0.23 deleterious(0.02) unknown(0) TCGA-FS-A1ZW-06 1 153005062 153005062 C T SPRR1B Missense_Mutation p.P81S 0.26 tolerated(0.12) probably_damaging(0.998) TCGA-FS-A1ZW-06 1 154987719 154987719 C T ZBTB7B Missense_Mutation p.R229W 0.21 deleterious(0.01) possibly_damaging(0.582) TCGA-FS-A1ZW-06 1 156815025 156815025 G A INSRR Silent p.F760F 0.26 TCGA-FS-A1ZW-06 1 156816462 156816462 G A INSRR Silent p.S553S 0.28 TCGA-FS-A1ZW-06 1 157667200 157667200 G A FCRL3 Missense_Mutation p.P192S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 1 157809178 157809178 G A CD5L Silent p.F17F 0.28 TCGA-FS-A1ZW-06 1 158324216 158324216 C T CD1E Silent p.S36S 0.29 TCGA-FS-A1ZW-06 1 158669501 158669501 G A OR6K2 Silent p.S314S 0.21 TCGA-FS-A1ZW-06 1 159505559 159505559 C T OR10J5 Missense_Mutation p.R80Q 0.32 tolerated(0.36) benign(0.029) TCGA-FS-A1ZW-06 1 16258976 16258976 C T SPEN Nonsense_Mutation p.R2081* 0.14 TCGA-FS-A1ZW-06 1 165877061 165877061 C T UCK2 3'UTR 0.24 TCGA-FS-A1ZW-06 1 165877062 165877062 C T UCK2 3'UTR 0.24 TCGA-FS-A1ZW-06 1 168065816 168065816 C T GPR161 Silent p.R363R 0.35 TCGA-FS-A1ZW-06 1 169515828 169515828 C T F5 Silent p.R538R 0.29 TCGA-FS-A1ZW-06 1 173455410 173455410 C T PRDX6 Missense_Mutation p.P139L 0.22 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZW-06 1 176563949 176563949 C A PAPPA2 Nonsense_Mutation p.C403* 0.21 TCGA-FS-A1ZW-06 1 17681136 17681136 G A PADI4 Missense_Mutation p.E422K 0.13 tolerated(0.12) benign(0.015) TCGA-FS-A1ZW-06 1 179363135 179363135 G A AXDND1 Missense_Mutation p.E321K 0.23 deleterious(0.02) possibly_damaging(0.874) TCGA-FS-A1ZW-06 1 182555916 182555916 G A RNASEL Missense_Mutation p.P9L 0.33 tolerated(0.28) benign(0.008) TCGA-FS-A1ZW-06 1 184765070 184765070 C T FAM129A Missense_Mutation p.G610S 0.24 deleterious(0.05) benign(0.005) TCGA-FS-A1ZW-06 1 184765071 184765071 C T FAM129A Silent p.L609L 0.24 TCGA-FS-A1ZW-06 1 185970529 185970529 C T HMCN1 Missense_Mutation p.P1390L 0.18 probably_damaging(0.999) TCGA-FS-A1ZW-06 1 19168222 19168222 C T TAS1R2 Splice_Site p.X531_splice 0.14 TCGA-FS-A1ZW-06 1 19209107 19209107 G A ALDH4A1 Intron 0.35 TCGA-FS-A1ZW-06 1 196928040 196928040 G A CFHR2 Missense_Mutation p.E215K 0.27 tolerated(0.36) benign(0.011) TCGA-FS-A1ZW-06 1 197026195 197026195 C T F13B Silent p.S373S 0.31 TCGA-FS-A1ZW-06 1 205272734 205272734 G A NUAK2 Silent p.L577L 0.30 TCGA-FS-A1ZW-06 1 205272896 205272896 G A NUAK2 Silent p.S523S 0.26 TCGA-FS-A1ZW-06 1 205492292 205492292 C T CDK18 5'UTR 0.26 TCGA-FS-A1ZW-06 1 205740632 205740632 C T RAB7L1 Missense_Mutation p.E116K 0.29 tolerated(0.44) benign(0.003) TCGA-FS-A1ZW-06 1 207851610 207851610 C T CR1L Silent p.F115F 0.35 TCGA-FS-A1ZW-06 1 208061248 208061248 C T CD34 Silent p.T331T 0.21 TCGA-FS-A1ZW-06 1 212965179 212965179 C T TATDN3 5'UTR 0.20 TCGA-FS-A1ZW-06 1 21551784 21551784 C T ECE1 Missense_Mutation p.E667K 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 1 216262415 216262415 C T USH2A Missense_Mutation p.E1609K 0.27 benign(0.292) TCGA-FS-A1ZW-06 1 216462695 216462695 G A USH2A Missense_Mutation p.S633L 0.30 possibly_damaging(0.612) TCGA-FS-A1ZW-06 1 22329551 22329551 G A CELA3A Silent p.E33E 0.36 TCGA-FS-A1ZW-06 1 22852732 22852732 A G ZBTB40 Missense_Mutation p.Q1188R 0.35 deleterious(0.01) benign(0.001) TCGA-FS-A1ZW-06 1 230381829 230381829 A G GALNT2 Silent p.S250S 0.25 TCGA-FS-A1ZW-06 1 237754065 237754065 G A RYR2 Silent p.A1311A 0.27 TCGA-FS-A1ZW-06 1 237774194 237774194 G A RYR2 Missense_Mutation p.V1606I 0.29 possibly_damaging(0.843) TCGA-FS-A1ZW-06 1 237982430 237982430 G A RYR2 Missense_Mutation p.R4843Q 0.27 possibly_damaging(0.857) TCGA-FS-A1ZW-06 1 240939511 240939511 C T RGS7 Silent p.G472G 0.25 TCGA-FS-A1ZW-06 1 24685076 24685076 G A STPG1 Missense_Mutation p.S321F 0.09 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 1 247063765 247063765 G A AHCTF1 Missense_Mutation p.S384L 0.38 deleterious(0) probably_damaging(0.96) TCGA-FS-A1ZW-06 1 247163224 247163224 G A ZNF695 Silent p.F52F 0.37 TCGA-FS-A1ZW-06 1 247588398 247588398 G A NLRP3 Silent p.L551L 0.26 TCGA-FS-A1ZW-06 1 247752184 247752184 C T OR2G2 Missense_Mutation p.R175C 0.22 tolerated(0.08) benign(0.082) TCGA-FS-A1ZW-06 1 248487141 248487141 G A OR2M7 Missense_Mutation p.H244Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZW-06 1 34006190 34006190 G A CSMD2 Missense_Mutation p.S3045F 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 1 34100903 34100903 G A CSMD2 Missense_Mutation p.S1626L 0.11 tolerated(0.08) benign(0.045) TCGA-FS-A1ZW-06 1 34128492 34128492 G A CSMD2 Missense_Mutation p.S1378L 0.15 deleterious(0) benign(0.234) TCGA-FS-A1ZW-06 1 34329957 34329957 T G HMGB4 Missense_Mutation p.H55Q 0.37 deleterious(0.05) benign(0.049) TCGA-FS-A1ZW-06 1 35223285 35223285 G A GJB5 Silent p.L118L 0.28 TCGA-FS-A1ZW-06 1 38331520 38331520 G A INPP5B Silent p.F809F 0.25 TCGA-FS-A1ZW-06 1 40929142 40929142 A G ZFP69B Missense_Mutation p.I496V 0.26 tolerated(1) possibly_damaging(0.598) TCGA-FS-A1ZW-06 1 46497984 46497984 C T MAST2 Missense_Mutation p.H1108Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.531) TCGA-FS-A1ZW-06 1 4772197 4772197 C T AJAP1 Silent p.I89I 0.30 TCGA-FS-A1ZW-06 1 54681876 54681876 C T MRPL37 Silent p.V351V 0.28 TCGA-FS-A1ZW-06 1 60499191 60499191 C T C1orf87 Missense_Mutation p.R329Q 0.24 tolerated(0.5) benign(0.117) TCGA-FS-A1ZW-06 1 6631078 6631078 C T TAS1R1 Nonsense_Mutation p.Q101* 0.30 TCGA-FS-A1ZW-06 1 84403605 84403605 G C TTLL7 Missense_Mutation p.S273C 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 1 94016545 94016545 C T FNBP1L Missense_Mutation p.L565F 0.26 tolerated(0.07) probably_damaging(0.929) TCGA-FS-A1ZW-06 1 982254 982254 G A AGRN Missense_Mutation p.R1102K 0.25 deleterious(0.03) probably_damaging(0.968) TCGA-FS-A1ZW-06 20 1551693 1551693 C T SIRPB1 Missense_Mutation p.G281E 0.25 tolerated(0.65) benign(0.102) TCGA-FS-A1ZW-06 20 17640802 17640802 G A RRBP1 Silent p.I117I 0.26 TCGA-FS-A1ZW-06 20 18022217 18022217 C T OVOL2 Missense_Mutation p.D158N 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 20 18142625 18142625 C T CSRP2BP Missense_Mutation p.L282F 0.27 tolerated(0.05) benign(0.094) TCGA-FS-A1ZW-06 20 19698204 19698204 C T SLC24A3 Silent p.S584S 0.28 TCGA-FS-A1ZW-06 20 23728518 23728518 C T CST1 Missense_Mutation p.E121K 0.29 tolerated(0.42) benign(0.008) TCGA-FS-A1ZW-06 20 30784638 30784638 G A PLAGL2 Silent p.L370L 0.24 TCGA-FS-A1ZW-06 20 30789889 30789889 G A PLAGL2 Silent p.G31G 0.26 TCGA-FS-A1ZW-06 20 31583446 31583446 C T SUN5 Silent p.E171E 0.34 TCGA-FS-A1ZW-06 20 35663762 35663762 G A RBL1 Missense_Mutation p.P685S 0.28 tolerated(0.07) benign(0.004) TCGA-FS-A1ZW-06 20 36385958 36385958 C T CTNNBL1 Intron 0.27 TCGA-FS-A1ZW-06 20 43353579 43353579 G A WISP2 Missense_Mutation p.E160K 0.31 deleterious(0.04) possibly_damaging(0.633) TCGA-FS-A1ZW-06 20 43835644 43835644 G A SEMG1 5'UTR 0.33 TCGA-FS-A1ZW-06 20 44236670 44236670 C T WFDC9 3'UTR 0.30 TCGA-FS-A1ZW-06 20 44236671 44236671 C T WFDC9 3'UTR 0.30 TCGA-FS-A1ZW-06 20 45017681 45017681 G A ELMO2 Missense_Mutation p.S141F 0.27 deleterious(0.04) possibly_damaging(0.56) TCGA-FS-A1ZW-06 20 45700823 45700823 G A EYA2 Splice_Site p.X139_splice 0.48 TCGA-FS-A1ZW-06 20 4776474 4776474 G A RASSF2 Silent p.L92L 0.32 TCGA-FS-A1ZW-06 20 4776475 4776475 G A RASSF2 Silent p.N91N 0.33 TCGA-FS-A1ZW-06 20 50140306 50140306 G A NFATC2 Silent p.F158F 0.26 TCGA-FS-A1ZW-06 20 55745970 55745970 G A BMP7 3'UTR 0.23 TCGA-FS-A1ZW-06 20 57042501 57042501 G A APCDD1L Silent p.I134I 0.19 TCGA-FS-A1ZW-06 20 57089764 57089764 C T APCDD1L 5'UTR 0.28 TCGA-FS-A1ZW-06 20 57429248 57429248 G A GNAS Missense_Mutation p.E310K 0.31 tolerated_low_confidence(0.41) unknown(0) TCGA-FS-A1ZW-06 20 58533712 58533712 C T CDH26 5'UTR 0.30 TCGA-FS-A1ZW-06 20 62120406 62120406 C T EEF1A2 Missense_Mutation p.E377K 0.34 deleterious_low_confidence(0.04) benign(0.129) TCGA-FS-A1ZW-06 20 62729389 62729389 C T OPRL1 Silent p.I156I 0.29 TCGA-FS-A1ZW-06 20 62842672 62842672 A T MYT1 Nonsense_Mutation p.K469* 0.29 TCGA-FS-A1ZW-06 20 76674 76674 G A DEFB125 Silent p.K29K 0.36 TCGA-FS-A1ZW-06 20 9546826 9546826 G A PAK7 Missense_Mutation p.S399F 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-FS-A1ZW-06 21 10906979 10906979 G A TPTE Missense_Mutation p.P528S 0.13 tolerated(0.74) benign(0.03) TCGA-FS-A1ZW-06 21 10998312 10998312 C T TPTE RNA 0.09 TCGA-FS-A1ZW-06 21 15561360 15561360 G A LIPI Missense_Mutation p.L164F 0.21 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZW-06 21 15592040 15592040 C T RBM11 Nonsense_Mutation p.R85* 0.28 TCGA-FS-A1ZW-06 21 18933732 18933732 C T CXADR Silent p.I257I 0.30 TCGA-FS-A1ZW-06 21 30414797 30414797 C T USP16 Missense_Mutation p.S376F 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 21 34897290 34897290 C T GART Missense_Mutation p.A362T 0.19 tolerated(0.3) benign(0.004) TCGA-FS-A1ZW-06 21 37623467 37623467 G A DOPEY2 Missense_Mutation p.R1669K 0.13 tolerated(0.12) benign(0.029) TCGA-FS-A1ZW-06 21 38390367 38390367 G A RIPPLY3 Missense_Mutation p.E145K 0.33 tolerated(0.1) possibly_damaging(0.801) TCGA-FS-A1ZW-06 21 42080586 42080586 G A DSCAM Missense_Mutation p.P52L 0.24 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZW-06 21 43815499 43815499 C T TMPRSS3 Missense_Mutation p.E10K 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.744) TCGA-FS-A1ZW-06 21 45518270 45518270 C T TRAPPC10 Silent p.P1067P 0.28 TCGA-FS-A1ZW-06 21 45518271 45518271 C T TRAPPC10 Missense_Mutation p.P1068S 0.28 tolerated(0.36) possibly_damaging(0.895) TCGA-FS-A1ZW-06 21 45876772 45876772 G A LRRC3 Missense_Mutation p.G82E 0.26 tolerated(0.34) benign(0.101) TCGA-FS-A1ZW-06 21 45959174 45959174 G A KRTAP10-1 3'UTR 0.31 TCGA-FS-A1ZW-06 21 46032202 46032202 C T KRTAP10-8 Missense_Mutation p.T62I 0.30 deleterious(0.02) benign(0.038) TCGA-FS-A1ZW-06 21 46032203 46032203 C T KRTAP10-8 Silent p.T62T 0.30 TCGA-FS-A1ZW-06 21 46066510 46066510 G T KRTAP10-11 Silent p.L45L 0.24 TCGA-FS-A1ZW-06 21 47831639 47831639 G A PCNT Silent p.K1884K 0.18 TCGA-FS-A1ZW-06 22 21742832 21742832 A G RIMBP3B Missense_Mutation p.N1562S 0.15 tolerated(0.3) benign(0.05) TCGA-FS-A1ZW-06 22 24584256 24584256 C T SUSD2 Missense_Mutation p.A802V 0.25 tolerated(0.94) benign(0.003) TCGA-FS-A1ZW-06 22 27021494 27021494 G A CRYBA4 Missense_Mutation p.E70K 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZW-06 22 30035088 30035088 C T NF2 Missense_Mutation p.H84Y 0.43 deleterious(0) possibly_damaging(0.831) TCGA-FS-A1ZW-06 22 30741175 30741175 T G SF3A1 Missense_Mutation p.Q133P 0.34 tolerated(0.25) possibly_damaging(0.84) TCGA-FS-A1ZW-06 22 30976584 30976584 G A PES1 Silent p.P339P 0.23 TCGA-FS-A1ZW-06 22 31324111 31324111 G A MORC2 Silent p.A913A 0.28 TCGA-FS-A1ZW-06 22 31656015 31656015 C T LIMK2 Missense_Mutation p.S147F 0.22 deleterious(0) possibly_damaging(0.883) TCGA-FS-A1ZW-06 22 33255299 33255299 T A TIMP3 Missense_Mutation p.Y191N 0.20 deleterious(0.04) possibly_damaging(0.475) TCGA-FS-A1ZW-06 22 36681727 36681727 G A MYH9 Missense_Mutation p.R1751W 0.24 probably_damaging(0.999) TCGA-FS-A1ZW-06 22 38021897 38021897 C G GGA1 Missense_Mutation p.A345G 0.33 tolerated(0.16) benign(0) TCGA-FS-A1ZW-06 22 38273723 38273723 G A EIF3L Missense_Mutation p.A374T 0.27 deleterious(0.02) benign(0.021) TCGA-FS-A1ZW-06 22 40161320 40161320 C T ENTHD1 Missense_Mutation p.R376Q 0.35 deleterious(0) benign(0.058) TCGA-FS-A1ZW-06 22 40364204 40364204 A C GRAP2 Missense_Mutation p.Q206H 0.36 tolerated(0.21) benign(0) TCGA-FS-A1ZW-06 22 41173251 41173251 A T SLC25A17 Missense_Mutation p.L193H 0.20 tolerated(0.07) benign(0.063) TCGA-FS-A1ZW-06 22 42334979 42334979 C T CENPM 3'UTR 0.40 TCGA-FS-A1ZW-06 22 43821049 43821049 C T MPPED1 Missense_Mutation p.P20S 0.29 deleterious_low_confidence(0) benign(0.243) TCGA-FS-A1ZW-06 22 46594430 46594430 C T PPARA Silent p.G50G 0.29 TCGA-FS-A1ZW-06 22 46655715 46655715 G A PKDREJ Missense_Mutation p.P1169S 0.36 tolerated(0.26) benign(0.062) TCGA-FS-A1ZW-06 22 46930151 46930151 G A CELSR1 Missense_Mutation p.R973W 0.31 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZW-06 22 50615991 50615991 G A PANX2 Missense_Mutation p.V284M 0.18 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZW-06 2 101911607 101911607 G A RNF149 Missense_Mutation p.P166L 0.12 tolerated(0.53) benign(0.358) TCGA-FS-A1ZW-06 2 103149271 103149271 G A SLC9A4 3'UTR 0.40 TCGA-FS-A1ZW-06 2 10560075 10560075 C T HPCAL1 Silent p.F64F 0.35 TCGA-FS-A1ZW-06 2 107040948 107040948 C T RGPD3 Missense_Mutation p.E1159K 0.32 tolerated(0.11) benign(0.065) TCGA-FS-A1ZW-06 2 10717816 10717816 C T NOL10 Silent p.L631L 0.31 TCGA-FS-A1ZW-06 2 113742458 113742458 G A IL36G Silent p.V114V 0.30 TCGA-FS-A1ZW-06 2 113890549 113890549 C T IL1RN 3'UTR 0.31 TCGA-FS-A1ZW-06 2 119735507 119735507 C T MARCO Silent p.L254L 0.21 TCGA-FS-A1ZW-06 2 119735508 119735508 C T MARCO Missense_Mutation p.P255S 0.21 tolerated(0.13) probably_damaging(0.992) TCGA-FS-A1ZW-06 2 119752177 119752177 C T MARCO 3'UTR 0.17 TCGA-FS-A1ZW-06 2 138033594 138033594 G A THSD7B Missense_Mutation p.R833K 0.30 deleterious(0.03) benign(0.14) TCGA-FS-A1ZW-06 2 139428990 139428990 C T NXPH2 Silent p.R99R 0.25 TCGA-FS-A1ZW-06 2 1481010 1481010 G A TPO Silent p.L324L 0.24 TCGA-FS-A1ZW-06 2 149528411 149528411 T A EPC2 Missense_Mutation p.D427E 0.26 tolerated(0.12) benign(0) TCGA-FS-A1ZW-06 2 149528412 149528412 T A EPC2 Missense_Mutation p.L428M 0.26 deleterious(0.05) possibly_damaging(0.707) TCGA-FS-A1ZW-06 2 159312973 159312973 C T CCDC148 5'UTR 0.35 TCGA-FS-A1ZW-06 2 166032796 166032796 G A SCN3A Missense_Mutation p.P37S 0.20 tolerated(0.4) possibly_damaging(0.706) TCGA-FS-A1ZW-06 2 166246326 166246326 A G SCN2A Missense_Mutation p.K2004E 0.32 tolerated_low_confidence(0.19) benign(0.253) TCGA-FS-A1ZW-06 2 166903433 166903433 G A SCN1A Silent p.F408F 0.35 TCGA-FS-A1ZW-06 2 167328849 167328849 C T SCN7A Missense_Mutation p.D184N 0.42 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZW-06 2 169787195 169787195 C T ABCB11 Missense_Mutation p.D1131N 0.24 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZW-06 2 177017469 177017469 C A HOXD4 Missense_Mutation p.H189Q 0.30 deleterious(0) possibly_damaging(0.657) TCGA-FS-A1ZW-06 2 178936809 178936809 T A PDE11A Missense_Mutation p.K119I 0.31 deleterious(0.01) possibly_damaging(0.902) TCGA-FS-A1ZW-06 2 179410659 179410659 G T TTN Silent p.V31768V 0.28 TCGA-FS-A1ZW-06 2 179417166 179417166 G A TTN Missense_Mutation p.P30154L 0.37 TCGA-FS-A1ZW-06 2 179558368 179558368 G A TTN Missense_Mutation p.A10521V 0.14 TCGA-FS-A1ZW-06 2 179606124 179606124 G A TTN Missense_Mutation p.P3946S 0.25 TCGA-FS-A1ZW-06 2 182542604 182542604 G A NEUROD1 Silent p.I328I 0.28 TCGA-FS-A1ZW-06 2 190444572 190444572 G A SLC40A1 Silent p.F26F 0.32 TCGA-FS-A1ZW-06 2 190719571 190719571 C T PMS1 Missense_Mutation p.P525S 0.25 tolerated(0.54) benign(0.001) TCGA-FS-A1ZW-06 2 19553205 19553205 T C OSR1 Missense_Mutation p.N121S 0.31 deleterious(0.03) probably_damaging(0.926) TCGA-FS-A1ZW-06 2 196913019 196913019 C T DNAH7 Splice_Site p.X84_splice 0.22 TCGA-FS-A1ZW-06 2 197777762 197777762 G A PGAP1 Missense_Mutation p.P165S 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-FS-A1ZW-06 2 201467038 201467038 C T AOX1 Silent p.P156P 0.27 TCGA-FS-A1ZW-06 2 20205776 20205776 G A MATN3 Silent p.A173A 0.28 TCGA-FS-A1ZW-06 2 203839116 203839116 C T CARF Missense_Mutation p.S464F 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 2 207173765 207173765 C T ZDBF2 Missense_Mutation p.P1505S 0.25 tolerated(0.47) possibly_damaging(0.641) TCGA-FS-A1ZW-06 2 21229477 21229477 C T APOB Missense_Mutation p.M3421I 0.29 benign(0.016) TCGA-FS-A1ZW-06 2 214794732 214794732 G A SPAG16 Nonsense_Mutation p.W421* 0.21 TCGA-FS-A1ZW-06 2 220037196 220037196 G C CNPPD1 3'UTR 0.31 TCGA-FS-A1ZW-06 2 220432081 220432081 G A OBSL1 Missense_Mutation p.S584F 0.29 tolerated(0.08) benign(0.243) TCGA-FS-A1ZW-06 2 222294835 222294835 G A EPHA4 Missense_Mutation p.P845S 0.19 tolerated(0.12) probably_damaging(0.985) TCGA-FS-A1ZW-06 2 225266236 225266236 G A FAM124B Missense_Mutation p.R84C 0.28 deleterious(0) probably_damaging(0.911) TCGA-FS-A1ZW-06 2 228881884 228881884 C T SPHKAP Missense_Mutation p.R1229Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 2 232262827 232262827 G A B3GNT7 Missense_Mutation p.D133N 0.26 tolerated(0.07) benign(0.006) TCGA-FS-A1ZW-06 2 233344935 233344935 C T ECEL1 Silent p.E752E 0.14 TCGA-FS-A1ZW-06 2 238275613 238275613 C T COL6A3 Silent p.L1739L 0.35 TCGA-FS-A1ZW-06 2 240024505 240024505 T A HDAC4 Missense_Mutation p.N729Y 0.30 deleterious(0) benign(0.117) TCGA-FS-A1ZW-06 2 241463384 241463384 A G ANKMY1 Silent p.L495L 0.37 TCGA-FS-A1ZW-06 2 27604391 27604391 G A PPM1G 3'UTR 0.26 TCGA-FS-A1ZW-06 2 28635280 28635280 G A FOSL2 Missense_Mutation p.D316N 0.37 deleterious(0.01) probably_damaging(0.977) TCGA-FS-A1ZW-06 2 29225560 29225560 G A FAM179A Missense_Mutation p.D196N 0.26 tolerated(0.12) probably_damaging(0.94) TCGA-FS-A1ZW-06 2 46842248 46842248 G A PIGF Missense_Mutation p.S19L 0.28 deleterious(0.05) benign(0.048) TCGA-FS-A1ZW-06 2 50723137 50723137 C T NRXN1 Missense_Mutation p.M1032I 0.15 tolerated(0.19) benign(0.006) TCGA-FS-A1ZW-06 2 54873100 54873100 C T SPTBN1 Silent p.S1510S 0.24 TCGA-FS-A1ZW-06 2 61298824 61298824 G A KIAA1841 Silent p.E78E 0.31 TCGA-FS-A1ZW-06 2 63220725 63220725 C T EHBP1 Missense_Mutation p.P1003S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZW-06 2 7030342 7030342 T G RSAD2 Missense_Mutation p.C258W 0.21 deleterious(0.01) benign(0.185) TCGA-FS-A1ZW-06 2 70923506 70923506 G A ADD2 Silent p.I115I 0.33 TCGA-FS-A1ZW-06 2 73477004 73477004 C T CCT7 Nonsense_Mutation p.R344* 0.31 TCGA-FS-A1ZW-06 2 73784428 73784428 T G ALMS1 Missense_Mutation p.V3386G 0.36 benign(0.007) TCGA-FS-A1ZW-06 2 74783057 74783057 C T DOK1 Missense_Mutation p.A164V 0.26 deleterious(0) probably_damaging(0.94) TCGA-FS-A1ZW-06 2 74783058 74783058 C T DOK1 Silent p.A164A 0.27 TCGA-FS-A1ZW-06 2 75933673 75933673 C T GCFC2 Missense_Mutation p.G124R 0.26 tolerated(0.38) benign(0.429) TCGA-FS-A1ZW-06 2 8871371 8871371 G A KIDINS220 Silent p.L1599L 0.30 TCGA-FS-A1ZW-06 2 89049589 89049589 C T RPIA Silent p.F310F 0.28 TCGA-FS-A1ZW-06 2 89544367 89544367 C T IGKV2-30 Missense_Mutation p.R86K 0.33 tolerated(0.05) benign(0.388) TCGA-FS-A1ZW-06 2 90199187 90199187 C T IGKV1D-12 Silent p.F116F 0.24 TCGA-FS-A1ZW-06 2 95952903 95952903 C T PROM2 Missense_Mutation p.A706V 0.16 tolerated(0.29) benign(0.011) TCGA-FS-A1ZW-06 2 99294786 99294786 A C MGAT4A Missense_Mutation p.D81E 0.24 tolerated(0.22) benign(0.099) TCGA-FS-A1ZW-06 3 100074060 100074060 T A NIT2 Missense_Mutation p.V260D 0.25 deleterious(0) benign(0.299) TCGA-FS-A1ZW-06 3 10089610 10089610 G A FANCD2 Missense_Mutation p.D430N 0.10 tolerated(0.05) benign(0.093) TCGA-FS-A1ZW-06 3 107885736 107885736 G A IFT57 Nonsense_Mutation p.Q316* 0.36 TCGA-FS-A1ZW-06 3 108541726 108541726 C T TRAT1 5'UTR 0.15 TCGA-FS-A1ZW-06 3 108639360 108639360 A T GUCA1C Missense_Mutation p.L93I 0.25 tolerated(0.08) benign(0.2) TCGA-FS-A1ZW-06 3 11076345 11076345 G A SLC6A1 Missense_Mutation p.M552I 0.32 tolerated(0.45) benign(0.081) TCGA-FS-A1ZW-06 3 111658439 111658439 G A PHLDB2 Missense_Mutation p.E750K 0.19 deleterious(0) possibly_damaging(0.682) TCGA-FS-A1ZW-06 3 111901021 111901021 G A SLC9C1 Missense_Mutation p.P870S 0.13 tolerated(0.21) benign(0.11) TCGA-FS-A1ZW-06 3 113378005 113378005 C T KIAA2018 Missense_Mutation p.E842K 0.14 benign(0.146) TCGA-FS-A1ZW-06 3 113724706 113724706 G A KIAA1407 Missense_Mutation p.S506F 0.39 deleterious(0.01) benign(0.309) TCGA-FS-A1ZW-06 3 120054784 120054784 G A LRRC58 Missense_Mutation p.L173F 0.18 deleterious(0) probably_damaging(0.985) TCGA-FS-A1ZW-06 3 120315215 120315215 C T NDUFB4 Silent p.F3F 0.27 TCGA-FS-A1ZW-06 3 121207738 121207738 G A POLQ Missense_Mutation p.T1347I 0.22 tolerated(0.05) benign(0.099) TCGA-FS-A1ZW-06 3 121828111 121828111 G A CD86 Splice_Site p.X235_splice 0.21 TCGA-FS-A1ZW-06 3 12421306 12421306 C T PPARG Silent p.I62I 0.27 TCGA-FS-A1ZW-06 3 124632523 124632523 G A MUC13 Missense_Mutation p.L323F 0.24 tolerated(0.2) benign(0.006) TCGA-FS-A1ZW-06 3 124646508 124646508 C T MUC13 Missense_Mutation p.G128R 0.29 tolerated(0.15) benign(0.202) TCGA-FS-A1ZW-06 3 130095535 130095535 G A COL6A5 Missense_Mutation p.E175K 0.18 tolerated(0.09) benign(0.012) TCGA-FS-A1ZW-06 3 13432750 13432750 G A NUP210 Missense_Mutation p.S165F 0.24 deleterious(0.02) benign(0.012) TCGA-FS-A1ZW-06 3 13613099 13613099 C T FBLN2 Missense_Mutation p.S415F 0.23 tolerated(0.68) benign(0.005) TCGA-FS-A1ZW-06 3 138116269 138116269 C T MRAS Silent p.S99S 0.35 TCGA-FS-A1ZW-06 3 13860792 13860792 G A WNT7A Silent p.N233N 0.40 TCGA-FS-A1ZW-06 3 148459199 148459199 G A AGTR1 Missense_Mutation p.R126Q 0.13 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 3 149087685 149087685 T C TM4SF1 Intron 0.37 TCGA-FS-A1ZW-06 3 158262013 158262013 G A RSRC1 Silent p.K318K 0.29 TCGA-FS-A1ZW-06 3 164714367 164714367 C T SI Missense_Mutation p.A1550T 0.18 deleterious(0) probably_damaging(0.935) TCGA-FS-A1ZW-06 3 167031806 167031806 A G ZBBX Missense_Mutation p.L458P 0.18 tolerated(0.05) probably_damaging(0.957) TCGA-FS-A1ZW-06 3 168834494 168834494 G A MECOM Missense_Mutation p.S266L 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 3 169646316 169646316 G A SAMD7 Missense_Mutation p.D331N 0.25 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZW-06 3 172607327 172607327 G A SPATA16 3'UTR 0.12 TCGA-FS-A1ZW-06 3 190026224 190026224 C T CLDN1 Missense_Mutation p.E160K 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 3 25674191 25674191 G A TOP2B Missense_Mutation p.P369L 0.27 deleterious(0.03) possibly_damaging(0.565) TCGA-FS-A1ZW-06 3 27759217 27759217 G A EOMES Missense_Mutation p.R469W 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 3 3078995 3078995 G A CNTN4 Missense_Mutation p.R692Q 0.19 tolerated(0.11) benign(0.034) TCGA-FS-A1ZW-06 3 32529466 32529466 G A CMTM6 Silent p.S126S 0.32 TCGA-FS-A1ZW-06 3 33552178 33552178 G A CLASP2 Missense_Mutation p.P1405S 0.25 tolerated(0.14) probably_damaging(1) TCGA-FS-A1ZW-06 3 39226199 39226199 C T XIRP1 Missense_Mutation p.D1580N 0.27 deleterious(0.04) benign(0.386) TCGA-FS-A1ZW-06 3 39307278 39307278 G A CX3CR1 Silent p.F273F 0.35 TCGA-FS-A1ZW-06 3 41996125 41996125 T A ULK4 Missense_Mutation p.I43L 0.27 tolerated(0.21) benign(0.107) TCGA-FS-A1ZW-06 3 424225 424225 G A CHL1 Missense_Mutation p.G683R 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 3 45589003 45589003 A T LARS2 Missense_Mutation p.N898I 0.21 deleterious(0) probably_damaging(0.935) TCGA-FS-A1ZW-06 3 45589004 45589004 C T LARS2 Silent p.N898N 0.21 TCGA-FS-A1ZW-06 3 46480832 46480832 C T LTF Silent p.R621R 0.35 TCGA-FS-A1ZW-06 3 46497310 46497310 C T LTF Missense_Mutation p.G159S 0.30 deleterious(0.03) possibly_damaging(0.787) TCGA-FS-A1ZW-06 3 48669505 48669505 G A SLC26A6 Intron 0.34 TCGA-FS-A1ZW-06 3 49897086 49897086 C T CAMKV Missense_Mutation p.D391N 0.34 tolerated(0.33) benign(0.404) TCGA-FS-A1ZW-06 3 53781413 53781413 C T CACNA1D Silent p.F1104F 0.34 TCGA-FS-A1ZW-06 3 53907082 53907082 G A ACTR8 Nonsense_Mutation p.R380* 0.29 TCGA-FS-A1ZW-06 3 58084616 58084616 C T FLNB Silent p.F442F 0.29 TCGA-FS-A1ZW-06 3 58094938 58094938 G A FLNB Missense_Mutation p.M696I 0.33 tolerated(0.57) benign(0.003) TCGA-FS-A1ZW-06 3 7348256 7348256 G A GRM7 Missense_Mutation p.G317E 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 3 88041016 88041016 T A HTR1F 3'UTR 0.20 TCGA-FS-A1ZW-06 3 97868569 97868569 C T OR5H14 Missense_Mutation p.L114F 0.19 deleterious(0) possibly_damaging(0.816) TCGA-FS-A1ZW-06 3 97888369 97888369 C T OR5H15 Silent p.L276L 0.22 TCGA-FS-A1ZW-06 4 100203727 100203727 C T ADH1A Missense_Mutation p.G202R 0.27 deleterious(0) possibly_damaging(0.908) TCGA-FS-A1ZW-06 4 100203746 100203746 G A ADH1A Silent p.T195T 0.35 TCGA-FS-A1ZW-06 4 102994868 102994868 G A BANK1 Missense_Mutation p.E776K 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-FS-A1ZW-06 4 107230030 107230030 G A TBCK Missense_Mutation p.P30S 0.29 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZW-06 4 114260454 114260454 C T ANK2 Missense_Mutation p.S1290F 0.44 probably_damaging(1) TCGA-FS-A1ZW-06 4 124323479 124323479 C T SPRY1 Missense_Mutation p.P245S 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 4 126370225 126370225 G A FAT4 Missense_Mutation p.R2685Q 0.23 benign(0.023) TCGA-FS-A1ZW-06 4 138449647 138449647 C T PCDH18 Missense_Mutation p.G909R 0.26 deleterious(0.03) possibly_damaging(0.736) TCGA-FS-A1ZW-06 4 141578297 141578297 G A TBC1D9 Missense_Mutation p.P764L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZW-06 4 156135760 156135760 C T NPY2R Silent p.S223S 0.29 TCGA-FS-A1ZW-06 4 164534484 164534484 G A MARCH1 Missense_Mutation p.S75F 0.30 deleterious(0.03) benign(0.01) TCGA-FS-A1ZW-06 4 175750003 175750003 C T GLRA3 5'UTR 0.27 TCGA-FS-A1ZW-06 4 175897020 175897020 C T ADAM29 Missense_Mutation p.S115F 0.25 deleterious(0) probably_damaging(0.944) TCGA-FS-A1ZW-06 4 175898831 175898831 G A ADAM29 Missense_Mutation p.E719K 0.25 tolerated(0.86) benign(0.006) TCGA-FS-A1ZW-06 4 177143536 177143536 G A ASB5 Silent p.V104V 0.27 TCGA-FS-A1ZW-06 4 183635324 183635324 G A TENM3 Missense_Mutation p.R769K 0.25 tolerated(0.22) benign(0.364) TCGA-FS-A1ZW-06 4 184431571 184431571 T A ING2 Silent p.I103I 0.30 TCGA-FS-A1ZW-06 4 185038147 185038147 C T ENPP6 Silent p.S239S 0.32 TCGA-FS-A1ZW-06 4 187535406 187535406 A C FAT1 Silent p.A3056A 0.16 TCGA-FS-A1ZW-06 4 20533638 20533638 G A SLIT2 Missense_Mutation p.E549K 0.19 tolerated(0.29) probably_damaging(0.982) TCGA-FS-A1ZW-06 4 27010420 27010420 G A STIM2 Missense_Mutation p.E437K 0.22 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZW-06 4 38933112 38933112 C T FAM114A1 Missense_Mutation p.T401I 0.30 tolerated(0.16) benign(0.104) TCGA-FS-A1ZW-06 4 41262768 41262768 C T UCHL1 Silent p.I93I 0.26 TCGA-FS-A1ZW-06 4 41984425 41984425 C T DCAF4L1 Nonsense_Mutation p.Q206* 0.25 TCGA-FS-A1ZW-06 4 46314709 46314709 G A GABRA2 Nonsense_Mutation p.R94* 0.23 TCGA-FS-A1ZW-06 4 52861191 52861191 G A LRRC66 Missense_Mutation p.P666L 0.25 deleterious(0) possibly_damaging(0.86) TCGA-FS-A1ZW-06 4 52862289 52862289 G A LRRC66 Missense_Mutation p.S300F 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-FS-A1ZW-06 4 628613 628613 G A PDE6B Missense_Mutation p.E206K 0.19 deleterious(0.02) possibly_damaging(0.641) TCGA-FS-A1ZW-06 4 68939691 68939691 G A TMPRSS11F Nonsense_Mutation p.R107* 0.22 TCGA-FS-A1ZW-06 4 69097035 69097035 G A TMPRSS11B Missense_Mutation p.S191F 0.36 deleterious(0) benign(0.432) TCGA-FS-A1ZW-06 4 69203412 69203412 G A YTHDC1 Missense_Mutation p.R113W 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FS-A1ZW-06 4 69431408 69431408 C T UGT2B17 Missense_Mutation p.G252E 0.22 deleterious(0.02) benign(0.183) TCGA-FS-A1ZW-06 4 69433628 69433628 G A UGT2B17 Missense_Mutation p.P192L 0.27 tolerated(0.07) possibly_damaging(0.568) TCGA-FS-A1ZW-06 4 70066197 70066197 C T UGT2B11 Nonsense_Mutation p.W517* 0.28 TCGA-FS-A1ZW-06 4 70080096 70080096 G A UGT2B11 Silent p.I115I 0.12 TCGA-FS-A1ZW-06 4 7026970 7026970 G A TBC1D14 Missense_Mutation p.R666Q 0.22 tolerated(0.1) probably_damaging(0.91) TCGA-FS-A1ZW-06 4 73149274 73149274 G A ADAMTS3 Missense_Mutation p.A1066V 0.35 deleterious_low_confidence(0.03) benign(0.094) TCGA-FS-A1ZW-06 4 73957500 73957500 G A ANKRD17 Missense_Mutation p.H1949Y 0.33 benign(0.183) TCGA-FS-A1ZW-06 4 76785644 76785644 T C PPEF2 Missense_Mutation p.N653D 0.23 tolerated(0.44) probably_damaging(0.997) TCGA-FS-A1ZW-06 4 84230557 84230557 G A HPSE Nonsense_Mutation p.Q328* 0.13 TCGA-FS-A1ZW-06 4 946159 946159 C T TMEM175 Missense_Mutation p.S128L 0.27 tolerated(0.12) benign(0.418) TCGA-FS-A1ZW-06 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.23 tolerated(0.54) benign(0.001) TCGA-FS-A1ZW-06 5 102310099 102310099 C T PAM Missense_Mutation p.P481L 0.20 deleterious(0.01) probably_damaging(0.967) TCGA-FS-A1ZW-06 5 118970375 118970375 G A FAM170A Missense_Mutation p.R311K 0.14 tolerated_low_confidence(1) benign(0.006) TCGA-FS-A1ZW-06 5 121759225 121759225 G A SNCAIP Missense_Mutation p.D265N 0.17 deleterious(0.01) possibly_damaging(0.455) TCGA-FS-A1ZW-06 5 125896808 125896808 G A ALDH7A1 Silent p.L294L 0.33 TCGA-FS-A1ZW-06 5 126172054 126172054 C T LMNB1 3'UTR 0.23 TCGA-FS-A1ZW-06 5 1280441 1280441 C T TERT Silent p.K594K 0.15 TCGA-FS-A1ZW-06 5 128321002 128321002 C T SLC27A6 Missense_Mutation p.L220F 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-FS-A1ZW-06 5 131662987 131662987 C T SLC22A4 Missense_Mutation p.P281L 0.46 deleterious(0) possibly_damaging(0.729) TCGA-FS-A1ZW-06 5 13769624 13769624 C T DNAH5 Missense_Mutation p.D3236N 0.33 benign(0) TCGA-FS-A1ZW-06 5 13920716 13920716 C T DNAH5 Missense_Mutation p.R224Q 0.34 benign(0) TCGA-FS-A1ZW-06 5 140209591 140209591 G A PCDHA6 Missense_Mutation p.E639K 0.17 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FS-A1ZW-06 5 140235856 140235856 G A PCDHA10 Missense_Mutation p.E75K 0.14 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-FS-A1ZW-06 5 140236503 140236503 G A PCDHA10 Silent p.R290R 0.30 TCGA-FS-A1ZW-06 5 140237633 140237633 C T PCDHA10 Missense_Mutation p.S667L 0.25 deleterious_low_confidence(0.04) probably_damaging(0.93) TCGA-FS-A1ZW-06 5 140562409 140562409 G A PCDHB16 Missense_Mutation p.R92Q 0.31 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FS-A1ZW-06 5 140563764 140563764 G A PCDHB16 Missense_Mutation p.E544K 0.55 deleterious_low_confidence(0.01) benign(0.228) TCGA-FS-A1ZW-06 5 140626826 140626826 C T PCDHB15 Silent p.F560F 0.26 TCGA-FS-A1ZW-06 5 140731709 140731709 T C PCDHGB1 Silent p.L628L 0.18 TCGA-FS-A1ZW-06 5 14749414 14749414 C T ANKH Missense_Mutation p.G230E 0.28 tolerated(0.69) probably_damaging(0.985) TCGA-FS-A1ZW-06 5 149495377 149495377 C T PDGFRB Silent p.P1090P 0.30 TCGA-FS-A1ZW-06 5 149501582 149501582 C T PDGFRB Silent p.E735E 0.08 TCGA-FS-A1ZW-06 5 150512090 150512090 G A ANXA6 Missense_Mutation p.A228V 0.46 tolerated(0.07) benign(0.128) TCGA-FS-A1ZW-06 5 153085391 153085391 C T GRIA1 Silent p.F539F 0.14 TCGA-FS-A1ZW-06 5 156675899 156675899 C T ITK Missense_Mutation p.P558L 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 5 169535405 169535405 T G FOXI1 Missense_Mutation p.S309R 0.24 tolerated(0.31) benign(0.045) TCGA-FS-A1ZW-06 5 171533651 171533651 G T STK10 Missense_Mutation p.P254H 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 5 171639076 171639076 G A UBTD2 Missense_Mutation p.R155C 0.20 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZW-06 5 176638794 176638794 G A NSD1 Missense_Mutation p.G1132R 0.10 tolerated_low_confidence(0.76) benign(0.001) TCGA-FS-A1ZW-06 5 176638795 176638795 G A NSD1 Missense_Mutation p.G1132E 0.12 tolerated_low_confidence(0.32) benign(0.001) TCGA-FS-A1ZW-06 5 178408617 178408617 G A GRM6 3'UTR 0.24 TCGA-FS-A1ZW-06 5 179440119 179440119 C T RNF130 Nonsense_Mutation p.W212* 0.32 TCGA-FS-A1ZW-06 5 19747341 19747341 T G CDH18 Missense_Mutation p.H78P 0.32 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZW-06 5 32738972 32738972 G A NPR3 Missense_Mutation p.D299N 0.16 tolerated(0.86) benign(0.002) TCGA-FS-A1ZW-06 5 33881255 33881255 C T ADAMTS12 Missense_Mutation p.G153E 0.13 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZW-06 5 35792480 35792480 G A SPEF2 Missense_Mutation p.D1496N 0.29 tolerated(0.09) probably_damaging(0.996) TCGA-FS-A1ZW-06 5 35910557 35910557 C T CAPSL Missense_Mutation p.E76K 0.27 tolerated(0.72) benign(0.043) TCGA-FS-A1ZW-06 5 39203096 39203096 A G FYB Intron 0.23 TCGA-FS-A1ZW-06 5 52214623 52214623 C T ITGA1 Nonsense_Mutation p.Q684* 0.14 TCGA-FS-A1ZW-06 5 79028741 79028741 C T CMYA5 Missense_Mutation p.R1385C 0.39 benign(0.348) TCGA-FS-A1ZW-06 5 89920996 89920996 G A GPR98 Missense_Mutation p.G203E 0.24 probably_damaging(0.993) TCGA-FS-A1ZW-06 5 89979617 89979617 G A GPR98 Missense_Mutation p.G1960E 0.32 probably_damaging(0.994) TCGA-FS-A1ZW-06 5 96215612 96215612 C T ERAP2 Missense_Mutation p.P75S 0.16 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZW-06 6 112422002 112422002 C T FAM229B 3'UTR 0.30 TCGA-FS-A1ZW-06 6 117150041 117150041 C T GPRC6A Missense_Mutation p.E46K 0.47 tolerated(0.14) benign(0.013) TCGA-FS-A1ZW-06 6 11768493 11768493 G A ADTRP Missense_Mutation p.P111S 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 6 123369856 123369856 G A CLVS2 Silent p.L218L 0.43 TCGA-FS-A1ZW-06 6 136686891 136686891 C T MAP7 Missense_Mutation p.E441K 0.43 tolerated(0.47) benign(0.047) TCGA-FS-A1ZW-06 6 142399800 142399800 G A NMBR Silent p.F221F 0.36 TCGA-FS-A1ZW-06 6 153042931 153042931 G A MYCT1 Missense_Mutation p.G84E 0.31 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZW-06 6 160858233 160858233 C T SLC22A3 Silent p.F426F 0.36 TCGA-FS-A1ZW-06 6 167754237 167754237 A T TTLL2 Missense_Mutation p.E283D 0.38 tolerated(0.11) probably_damaging(0.976) TCGA-FS-A1ZW-06 6 17772169 17772169 G A KIF13A Silent p.A1482A 0.43 TCGA-FS-A1ZW-06 6 22570479 22570479 G A HDGFL1 Silent p.R225R 0.54 TCGA-FS-A1ZW-06 6 24848259 24848259 G A FAM65B Silent p.S357S 0.26 TCGA-FS-A1ZW-06 6 26460007 26460007 C T BTN2A1 Silent p.F127F 0.42 TCGA-FS-A1ZW-06 6 28472256 28472256 G A GPX6 Missense_Mutation p.S160F 0.40 deleterious(0) benign(0.162) TCGA-FS-A1ZW-06 6 28474188 28474188 T G GPX6 Missense_Mutation p.E87A 0.16 tolerated(0.07) benign(0.246) TCGA-FS-A1ZW-06 6 28540229 28540229 C T SCAND3 Missense_Mutation p.R1146K 0.33 tolerated_low_confidence(0.11) probably_damaging(0.931) TCGA-FS-A1ZW-06 6 29012196 29012196 C T OR2W1 Missense_Mutation p.G253R 0.14 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZW-06 6 29079827 29079827 C T OR2J3 Silent p.L54L 0.21 TCGA-FS-A1ZW-06 6 30862382 30862382 C T DDR1 Missense_Mutation p.P483S 0.32 tolerated(0.88) benign(0.062) TCGA-FS-A1ZW-06 6 30862383 30862383 C T DDR1 Missense_Mutation p.P483L 0.32 tolerated(0.32) benign(0.013) TCGA-FS-A1ZW-06 6 31926872 31926872 G A SKIV2L 5'UTR 0.47 TCGA-FS-A1ZW-06 6 32053810 32053810 G A TNXB Silent p.L955L 0.20 TCGA-FS-A1ZW-06 6 32814931 32814931 C A TAP1 Missense_Mutation p.A712S 0.23 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZW-06 6 32918341 32918341 G A HLA-DMA Nonsense_Mutation p.Q110* 0.50 TCGA-FS-A1ZW-06 6 33156871 33156871 G A COL11A2 Silent p.V109V 0.19 TCGA-FS-A1ZW-06 6 33178988 33178988 G T RING1 Missense_Mutation p.S170I 0.47 deleterious(0.01) benign(0.403) TCGA-FS-A1ZW-06 6 33286918 33286918 C T DAXX Silent p.L673L 0.40 TCGA-FS-A1ZW-06 6 33694521 33694521 C T IP6K3 Silent p.E192E 0.58 TCGA-FS-A1ZW-06 6 35716394 35716394 G A ARMC12 Missense_Mutation p.R284Q 0.24 deleterious(0.03) possibly_damaging(0.856) TCGA-FS-A1ZW-06 6 38851680 38851680 G A DNAH8 Missense_Mutation p.R2505Q 0.38 probably_damaging(1) TCGA-FS-A1ZW-06 6 38980014 38980014 G A DNAH8 Missense_Mutation p.M4248I 0.40 benign(0.329) TCGA-FS-A1ZW-06 6 43472767 43472767 C A TJAP1 Missense_Mutation p.P283H 0.21 tolerated(0.06) possibly_damaging(0.902) TCGA-FS-A1ZW-06 6 47847147 47847147 G A PTCHD4 Missense_Mutation p.S478F 0.33 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZW-06 6 49753703 49753703 G A PGK2 Silent p.L400L 0.31 TCGA-FS-A1ZW-06 6 52303138 52303138 C T EFHC1 Missense_Mutation p.P108S 0.28 tolerated(0.44) benign(0.01) TCGA-FS-A1ZW-06 6 55989063 55989063 C T COL21A1 Missense_Mutation p.G560S 0.19 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZW-06 6 6266812 6266812 G A F13A1 Missense_Mutation p.L184F 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 6 73902301 73902301 C T KCNQ5 Missense_Mutation p.L594F 0.36 tolerated(0.17) probably_damaging(0.995) TCGA-FS-A1ZW-06 6 74115538 74115538 C T DDX43 Nonsense_Mutation p.Q263* 0.45 TCGA-FS-A1ZW-06 6 75844525 75844525 T C COL12A1 Missense_Mutation p.K1814R 0.51 benign(0.006) TCGA-FS-A1ZW-06 6 76022244 76022244 C T FILIP1 Missense_Mutation p.E1102K 0.44 tolerated(0.53) possibly_damaging(0.787) TCGA-FS-A1ZW-06 6 76063410 76063410 C T FILIP1 Silent p.Q158Q 0.46 TCGA-FS-A1ZW-06 6 84862679 84862679 G A KIAA1009 Nonsense_Mutation p.Q1072* 0.14 TCGA-FS-A1ZW-06 6 88854075 88854075 G A CNR1 Missense_Mutation p.R307C 0.46 tolerated(0.08) probably_damaging(0.97) TCGA-FS-A1ZW-06 6 97247595 97247595 C T GPR63 Missense_Mutation p.A5T 0.35 tolerated_low_confidence(0.34) benign(0.001) TCGA-FS-A1ZW-06 7 100054486 100054486 G A C7orf61 Silent p.R170R 0.39 TCGA-FS-A1ZW-06 7 100218451 100218451 G A TFR2 3'UTR 0.19 TCGA-FS-A1ZW-06 7 100333342 100333342 G A ZAN Splice_Site p.X18_splice 0.32 TCGA-FS-A1ZW-06 7 100458768 100458768 C T SLC12A9 Silent p.L409L 0.27 TCGA-FS-A1ZW-06 7 100685611 100685611 C T MUC17 Silent p.T3638T 0.19 TCGA-FS-A1ZW-06 7 100685825 100685825 G A MUC17 Missense_Mutation p.E3710K 0.30 benign(0.004) TCGA-FS-A1ZW-06 7 102837652 102837652 G A DPY19L2P2 RNA 0.34 TCGA-FS-A1ZW-06 7 104844195 104844195 G A SRPK2 Missense_Mutation p.P37S 0.27 tolerated(0.37) unknown(0) TCGA-FS-A1ZW-06 7 105662830 105662830 G A CDHR3 Missense_Mutation p.G671E 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 7 105672847 105672847 G A CDHR3 Missense_Mutation p.E788K 0.12 tolerated(1) benign(0.001) TCGA-FS-A1ZW-06 7 119915400 119915400 G A KCND2 Missense_Mutation p.M238I 0.32 tolerated(0.48) benign(0.204) TCGA-FS-A1ZW-06 7 120610780 120610780 C T ING3 Missense_Mutation p.S316F 0.15 deleterious(0.05) possibly_damaging(0.548) TCGA-FS-A1ZW-06 7 121651577 121651577 C T PTPRZ1 Missense_Mutation p.S826F 0.28 deleterious_low_confidence(0) benign(0.016) TCGA-FS-A1ZW-06 7 122768996 122768996 G A SLC13A1 Nonsense_Mutation p.Q346* 0.25 TCGA-FS-A1ZW-06 7 123594436 123594436 C T SPAM1 Missense_Mutation p.P271L 0.33 tolerated(0.15) benign(0.002) TCGA-FS-A1ZW-06 7 131866252 131866252 G A PLXNA4 Missense_Mutation p.S1127F 0.30 deleterious(0) probably_damaging(0.912) TCGA-FS-A1ZW-06 7 139415944 139415944 G A HIPK2 Missense_Mutation p.P297L 0.32 tolerated(0.17) possibly_damaging(0.737) TCGA-FS-A1ZW-06 7 13975376 13975376 G A ETV1 Missense_Mutation p.P171S 0.25 tolerated(0.11) benign(0.01) TCGA-FS-A1ZW-06 7 141424038 141424038 G A WEE2 Missense_Mutation p.G395E 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 7 141708471 141708471 G A MGAM Missense_Mutation p.R98Q 0.24 deleterious(0.01) probably_damaging(0.919) TCGA-FS-A1ZW-06 7 141736669 141736669 C T MGAM Missense_Mutation p.S708F 0.25 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZW-06 7 142198029 142198029 G A TRBV11-2 RNA 0.26 TCGA-FS-A1ZW-06 7 142583348 142583348 G A TRPV6 5'UTR 0.33 TCGA-FS-A1ZW-06 7 143048886 143048886 C T CLCN1 Missense_Mutation p.P932L 0.18 tolerated_low_confidence(0.14) benign(0.009) TCGA-FS-A1ZW-06 7 143270350 143270350 G A CTAGE15 Silent p.R480R 0.32 TCGA-FS-A1ZW-06 7 143633213 143633213 G C OR2F2 Missense_Mutation p.E296D 0.24 tolerated(0.89) benign(0.015) TCGA-FS-A1ZW-06 7 143747507 143747507 C T OR2A5 Nonsense_Mutation p.Q5* 0.26 TCGA-FS-A1ZW-06 7 148701135 148701135 G A PDIA4 Silent p.P563P 0.31 TCGA-FS-A1ZW-06 7 150033880 150033880 C T LRRC61 5'UTR 0.38 TCGA-FS-A1ZW-06 7 150033881 150033881 C T LRRC61 5'UTR 0.39 TCGA-FS-A1ZW-06 7 150269487 150269487 C T GIMAP4 Missense_Mutation p.T110I 0.25 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZW-06 7 150327227 150327227 C T GIMAP6 Missense_Mutation p.E2K 0.30 tolerated(0.1) unknown(0) TCGA-FS-A1ZW-06 7 150648537 150648537 G A KCNH2 Silent p.G648G 0.28 TCGA-FS-A1ZW-06 7 151835979 151835979 G A KMT2C Missense_Mutation p.H4849Y 0.24 probably_damaging(0.999) TCGA-FS-A1ZW-06 7 156754850 156754850 G A NOM1 Silent p.R546R 0.26 TCGA-FS-A1ZW-06 7 1579891 1579891 C T MAFK Silent p.F117F 0.35 TCGA-FS-A1ZW-06 7 18674361 18674361 C T HDAC9 Missense_Mutation p.A303V 0.54 tolerated(0.05) benign(0.087) TCGA-FS-A1ZW-06 7 21723441 21723441 C T DNAH11 Missense_Mutation p.R1841C 0.29 probably_damaging(0.999) TCGA-FS-A1ZW-06 7 31008693 31008693 G A GHRHR Nonsense_Mutation p.W59* 0.29 TCGA-FS-A1ZW-06 7 31862772 31862772 G A PDE1C Silent p.I559I 0.29 TCGA-FS-A1ZW-06 7 37936583 37936583 C T NME8 Silent p.I552I 0.25 TCGA-FS-A1ZW-06 7 41730115 41730115 G A INHBA Silent p.F138F 0.16 TCGA-FS-A1ZW-06 7 48619965 48619965 C T ABCA13 Missense_Mutation p.P4834S 0.47 benign(0.151) TCGA-FS-A1ZW-06 7 73279529 73279529 G A WBSCR28 Silent p.Q93Q 0.37 TCGA-FS-A1ZW-06 7 75155272 75155272 C A PMS2P3 RNA 0.29 TCGA-FS-A1ZW-06 7 76924064 76924064 G A CCDC146 Missense_Mutation p.A917T 0.19 tolerated(0.08) benign(0.012) TCGA-FS-A1ZW-06 7 80427444 80427444 G A SEMA3C Silent p.S365S 0.21 TCGA-FS-A1ZW-06 7 82784281 82784281 C T PCLO Missense_Mutation p.S559N 0.29 unknown(0) TCGA-FS-A1ZW-06 7 84628728 84628728 A C SEMA3D 3'UTR 0.18 TCGA-FS-A1ZW-06 7 91722539 91722539 G T AKAP9 Nonsense_Mutation p.E3163* 0.32 TCGA-FS-A1ZW-06 7 92731662 92731662 A G SAMD9 Missense_Mutation p.L1250P 0.23 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZW-06 7 92731663 92731663 G A SAMD9 Missense_Mutation p.L1250F 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-FS-A1ZW-06 7 96746946 96746946 C T ACN9 5'UTR 0.33 TCGA-FS-A1ZW-06 7 96746947 96746947 C T ACN9 5'UTR 0.35 TCGA-FS-A1ZW-06 7 97862948 97862948 G A TECPR1 Missense_Mutation p.P486L 0.36 deleterious(0.05) possibly_damaging(0.77) TCGA-FS-A1ZW-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.31 probably_damaging(0.984) TCGA-FS-A1ZW-06 7 99097744 99097744 G A ZNF394 5'UTR 0.27 TCGA-FS-A1ZW-06 8 103662565 103662565 G A KLF10 Missense_Mutation p.S413F 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 8 104831679 104831679 G A RIMS2 Intron 0.16 TCGA-FS-A1ZW-06 8 106800990 106800990 G A ZFPM2 Missense_Mutation p.E193K 0.33 deleterious(0.02) probably_damaging(0.917) TCGA-FS-A1ZW-06 8 110437354 110437354 G A PKHD1L1 Missense_Mutation p.G913E 0.25 tolerated(0.12) possibly_damaging(0.489) TCGA-FS-A1ZW-06 8 110457751 110457751 C T PKHD1L1 Missense_Mutation p.P1885S 0.15 deleterious(0.05) probably_damaging(0.983) TCGA-FS-A1ZW-06 8 110509188 110509188 C T PKHD1L1 Silent p.A3456A 0.25 TCGA-FS-A1ZW-06 8 119593128 119593128 G A SAMD12 Silent p.L6L 0.23 TCGA-FS-A1ZW-06 8 121259858 121259858 C T COL14A1 Missense_Mutation p.S829F 0.37 deleterious(0.04) benign(0.089) TCGA-FS-A1ZW-06 8 133885333 133885333 C T TG Missense_Mutation p.R169C 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 8 134107327 134107327 G A TG Missense_Mutation p.E2427K 0.27 tolerated(0.69) benign(0.008) TCGA-FS-A1ZW-06 8 135612558 135612558 G A ZFAT Intron 0.31 TCGA-FS-A1ZW-06 8 140630786 140630786 C T KCNK9 Silent p.R280R 0.20 TCGA-FS-A1ZW-06 8 141742711 141742711 G A PTK2 Intron 0.23 TCGA-FS-A1ZW-06 8 142161759 142161759 C T DENND3 Silent p.F219F 0.21 TCGA-FS-A1ZW-06 8 143996195 143996195 C T CYP11B2 Missense_Mutation p.R242K 0.14 tolerated(0.5) benign(0.052) TCGA-FS-A1ZW-06 8 144940357 144940357 G A EPPK1 Silent p.H2355H 0.05 TCGA-FS-A1ZW-06 8 1575016 1575016 C T DLGAP2 Missense_Mutation p.A438V 0.20 tolerated(0.09) probably_damaging(0.979) TCGA-FS-A1ZW-06 8 21938682 21938682 G A DMTN Missense_Mutation p.G361E 0.18 tolerated(0.19) probably_damaging(0.997) TCGA-FS-A1ZW-06 8 22470634 22470634 C T CCAR2 Missense_Mutation p.P230L 0.27 tolerated(0.14) benign(0.11) TCGA-FS-A1ZW-06 8 23702439 23702439 G A STC1 Silent p.I196I 0.30 TCGA-FS-A1ZW-06 8 24242035 24242035 C T ADAMDEC1 Silent p.S6S 0.31 TCGA-FS-A1ZW-06 8 24333986 24333986 G A ADAM7 Missense_Mutation p.R225Q 0.22 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZW-06 8 27737264 27737264 C T SCARA5 Missense_Mutation p.M391I 0.23 tolerated(0.44) benign(0) TCGA-FS-A1ZW-06 8 2855685 2855685 C T CSMD1 Missense_Mutation p.G2742E 0.33 probably_damaging(1) TCGA-FS-A1ZW-06 8 2964062 2964062 G A CSMD1 Missense_Mutation p.P2313S 0.26 probably_damaging(0.999) TCGA-FS-A1ZW-06 8 36691136 36691136 T C KCNU1 Missense_Mutation p.S391P 0.23 tolerated(0.19) benign(0.445) TCGA-FS-A1ZW-06 8 37691640 37691640 C T GPR124 Silent p.I534I 0.26 TCGA-FS-A1ZW-06 8 38175405 38175405 C T WHSC1L1 Intron 0.22 TCGA-FS-A1ZW-06 8 52322009 52322009 C T PXDNL Silent p.A725A 0.28 TCGA-FS-A1ZW-06 8 52339295 52339295 G A PXDNL Missense_Mutation p.P517S 0.21 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZW-06 8 55541974 55541974 G A RP1 Silent p.K1844K 0.38 TCGA-FS-A1ZW-06 8 57079666 57079666 G A PLAG1 Silent p.F213F 0.27 TCGA-FS-A1ZW-06 8 63985583 63985583 C T TTPA Missense_Mutation p.R90K 0.23 tolerated(0.08) benign(0) TCGA-FS-A1ZW-06 8 67012243 67012243 C T DNAJC5B Nonsense_Mutation p.R193* 0.22 TCGA-FS-A1ZW-06 8 68989661 68989661 G A PREX2 Missense_Mutation p.M533I 0.27 tolerated(0.08) benign(0.002) TCGA-FS-A1ZW-06 8 72229866 72229866 T A EYA1 Silent p.G159G 0.25 TCGA-FS-A1ZW-06 8 77618650 77618650 C T ZFHX4 Missense_Mutation p.T776I 0.34 possibly_damaging(0.702) TCGA-FS-A1ZW-06 8 77768484 77768484 C T ZFHX4 Silent p.L3109L 0.33 TCGA-FS-A1ZW-06 8 92972609 92972609 T A RUNX1T1 Missense_Mutation p.Q570L 0.24 tolerated(0.3) benign(0.041) TCGA-FS-A1ZW-06 8 95768290 95768290 C T DPY19L4 Missense_Mutation p.S213F 0.28 deleterious(0) probably_damaging(0.958) TCGA-FS-A1ZW-06 8 95782750 95782750 C T DPY19L4 Missense_Mutation p.H469Y 0.25 deleterious(0) possibly_damaging(0.811) TCGA-FS-A1ZW-06 8 99208229 99208229 G A NIPAL2 Silent p.I295I 0.31 TCGA-FS-A1ZW-06 9 105767023 105767023 G A CYLC2 Nonsense_Mutation p.W76* 0.40 TCGA-FS-A1ZW-06 9 108467950 108467950 G A TMEM38B Missense_Mutation p.G62E 0.39 tolerated(0.13) possibly_damaging(0.796) TCGA-FS-A1ZW-06 9 116185748 116185748 C T C9orf43 Missense_Mutation p.S209F 0.37 tolerated(0.88) benign(0.003) TCGA-FS-A1ZW-06 9 117014922 117014922 C T COL27A1 Missense_Mutation p.S1028L 0.45 unknown(0) TCGA-FS-A1ZW-06 9 126133213 126133213 C T CRB2 Silent p.F627F 0.47 TCGA-FS-A1ZW-06 9 127912061 127912061 G A PPP6C Missense_Mutation p.S307L 0.47 deleterious(0.02) benign(0.043) TCGA-FS-A1ZW-06 9 13138031 13138031 G A MPDZ Silent p.V1375V 0.63 TCGA-FS-A1ZW-06 9 136650974 136650974 C A VAV2 Nonsense_Mutation p.G486* 0.60 TCGA-FS-A1ZW-06 9 137716702 137716702 G A COL5A1 Splice_Site p.X1652_splice 0.43 TCGA-FS-A1ZW-06 9 137987737 137987737 G T OLFM1 Missense_Mutation p.V92F 0.49 deleterious(0.01) benign(0.117) TCGA-FS-A1ZW-06 9 140218287 140218287 C T EXD3 Missense_Mutation p.G692R 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZW-06 9 14737344 14737344 G A FREM1 3'UTR 0.38 TCGA-FS-A1ZW-06 9 19032933 19032933 C T FAM154A 5'UTR 0.36 TCGA-FS-A1ZW-06 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.48 TCGA-FS-A1ZW-06 9 27556764 27556764 G A C9orf72 Missense_Mutation p.R296W 0.49 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 9 3293183 3293183 G A RFX3 Missense_Mutation p.L209F 0.45 deleterious(0) possibly_damaging(0.646) TCGA-FS-A1ZW-06 9 34517343 34517343 G A DNAI1 Missense_Mutation p.A627T 0.46 tolerated(0.43) benign(0.002) TCGA-FS-A1ZW-06 9 34660720 34660720 C G IL11RA Intron 0.57 TCGA-FS-A1ZW-06 9 35042999 35042999 G A C9orf131 Missense_Mutation p.E125K 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZW-06 9 35842423 35842423 C T TMEM8B 5'UTR 0.38 TCGA-FS-A1ZW-06 9 38586224 38586224 C T ANKRD18A Missense_Mutation p.D735N 0.50 tolerated(0.65) benign(0.094) TCGA-FS-A1ZW-06 9 39177470 39177470 G A CNTNAP3 Missense_Mutation p.P258S 0.38 tolerated(0.82) benign(0.044) TCGA-FS-A1ZW-06 9 77353524 77353524 G A TRPM6 Silent p.L1859L 0.28 TCGA-FS-A1ZW-06 9 78848417 78848417 G A PCSK5 Nonsense_Mutation p.W924* 0.47 TCGA-FS-A1ZW-06 9 80262628 80262628 C T GNA14 Missense_Mutation p.D28N 0.48 deleterious(0.01) benign(0.024) TCGA-FS-A1ZW-06 9 94486143 94486143 G A ROR2 Missense_Mutation p.P878L 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZW-06 9 96428317 96428317 C T PHF2 Missense_Mutation p.P721L 0.36 tolerated(0.16) unknown(0) TCGA-FS-A1ZW-06 X 100601521 100601521 G A TIMM8A Missense_Mutation p.S87F 0.62 tolerated(0.07) benign(0.006) TCGA-FS-A1ZW-06 X 101396105 101396105 C T TCEAL6 Missense_Mutation p.E67K 0.47 tolerated(0.12) benign(0.169) TCGA-FS-A1ZW-06 X 102339406 102339406 G A NXF3 Missense_Mutation p.S72L 0.58 tolerated(0.15) benign(0.005) TCGA-FS-A1ZW-06 X 105279124 105279124 C T SERPINA7 Nonsense_Mutation p.W292* 0.48 TCGA-FS-A1ZW-06 X 105855709 105855709 G A CXorf57 Silent p.R133R 0.46 TCGA-FS-A1ZW-06 X 105855710 105855710 G A CXorf57 Missense_Mutation p.V134I 0.47 deleterious(0.03) possibly_damaging(0.795) TCGA-FS-A1ZW-06 X 117035815 117035815 T A KLHL13 Silent p.G490G 0.53 TCGA-FS-A1ZW-06 X 119500469 119500469 G A ATP1B4 Silent p.S51S 0.54 TCGA-FS-A1ZW-06 X 128887197 128887197 G A XPNPEP2 Silent p.K360K 0.07 TCGA-FS-A1ZW-06 X 132161573 132161573 C T USP26 Missense_Mutation p.E226K 0.59 tolerated(0.65) benign(0.021) TCGA-FS-A1ZW-06 X 140335692 140335692 C T SPANXC Silent p.E84E 0.37 TCGA-FS-A1ZW-06 X 140984580 140984580 C T MAGEC3 Intron 0.67 TCGA-FS-A1ZW-06 X 1422865 1422865 C T CSF2RA Silent p.I366I 0.33 TCGA-FS-A1ZW-06 X 1506175 1506175 C T SLC25A6 Missense_Mutation p.G246R 0.30 tolerated(0.08) benign(0.386) TCGA-FS-A1ZW-06 X 150832698 150832698 G A PASD1 Missense_Mutation p.E317K 0.56 tolerated(0.21) benign(0.047) TCGA-FS-A1ZW-06 X 150889904 150889904 C T FATE1 Missense_Mutation p.S91L 0.45 tolerated(0.56) benign(0.089) TCGA-FS-A1ZW-06 X 151514098 151514098 G A GABRA3 Missense_Mutation p.R73C 0.65 deleterious(0.01) probably_damaging(0.993) TCGA-FS-A1ZW-06 X 151870087 151870087 G A MAGEA6 Silent p.R259R 0.50 TCGA-FS-A1ZW-06 X 23018892 23018892 G A DDX53 Missense_Mutation p.V240I 0.55 tolerated(0.14) benign(0.007) TCGA-FS-A1ZW-06 X 24225549 24225550 - A ZFX Frame_Shift_Ins p.V253Gfs*5 0.41 TCGA-FS-A1ZW-06 X 2951252 2951252 C T ARSH Silent p.S505S 0.62 TCGA-FS-A1ZW-06 X 3241070 3241070 C T MXRA5 Missense_Mutation p.E886K 0.51 tolerated(0.31) benign(0.016) TCGA-FS-A1ZW-06 X 46719518 46719518 C T RP2 Silent p.F288F 0.63 TCGA-FS-A1ZW-06 X 48126356 48126356 G A SSX1 3'UTR 0.54 TCGA-FS-A1ZW-06 X 48858670 48858670 C T GRIPAP1 5'UTR 0.71 TCGA-FS-A1ZW-06 X 48973501 48973501 G T GPKOW Missense_Mutation p.P266T 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1ZW-06 X 51150935 51150935 T A CXorf67 Missense_Mutation p.L356H 0.64 tolerated(0.55) possibly_damaging(0.629) TCGA-FS-A1ZW-06 X 52677369 52677369 C T SSX7 Silent p.G136G 0.58 TCGA-FS-A1ZW-06 X 57473467 57473467 C T FAAH2 Missense_Mutation p.S408F 0.55 deleterious(0) possibly_damaging(0.756) TCGA-FS-A1ZW-06 X 6451786 6451786 C T VCX3A Silent p.%3D 0.43 TCGA-FS-A1ZW-06 X 67283898 67283898 G A OPHN1 Silent p.S652S 0.56 TCGA-FS-A1ZW-06 X 67942407 67942407 C T STARD8 Silent p.D906D 0.38 TCGA-FS-A1ZW-06 X 72667348 72667348 C T CDX4 Missense_Mutation p.P87S 0.49 tolerated(0.4) benign(0.047) TCGA-FS-A1ZW-06 X 73962799 73962799 T C KIAA2022 Silent p.V531V 0.46 TCGA-FS-A1ZW-06 X 7811572 7811572 C T VCX Missense_Mutation p.R46C 0.22 deleterious(0.02) unknown(0) TCGA-FS-A1ZW-06 X 84570718 84570718 C T POF1B Missense_Mutation p.D293N 0.50 tolerated(0.42) benign(0.008) TCGA-FS-A1ZW-06 X 85769311 85769311 C T DACH2 Missense_Mutation p.S186F 0.36 deleterious(0.03) probably_damaging(0.961) TCGA-FS-A1ZW-06 Y 6115472 6115472 G A TSPY2 Missense_Mutation p.E188K 0.82 tolerated(1) benign(0.124) TCGA-FS-A1ZY-06 10 104120107 104120107 C T GBF1 Silent p.T448T 0.40 TCGA-FS-A1ZY-06 11 124439994 124439994 C G OR8A1 Missense_Mutation p.C10W 0.79 tolerated_low_confidence(0.12) benign(0.06) TCGA-FS-A1ZY-06 11 55761975 55761975 G T OR5F1 Missense_Mutation p.L43I 0.29 tolerated(0.14) benign(0.001) TCGA-FS-A1ZY-06 12 105589120 105589120 G A APPL2 Missense_Mutation p.A393V 0.31 deleterious(0.01) possibly_damaging(0.844) TCGA-FS-A1ZY-06 12 107048024 107048024 G A RFX4 Silent p.E79E 0.32 TCGA-FS-A1ZY-06 12 13761663 13761663 G A GRIN2B Silent p.S628S 0.38 TCGA-FS-A1ZY-06 12 20806962 20806962 T G PDE3A Missense_Mutation p.S1003A 0.52 deleterious(0) possibly_damaging(0.803) TCGA-FS-A1ZY-06 12 53009977 53009977 C T KRT73 Missense_Mutation p.R212H 0.27 deleterious(0.04) benign(0.327) TCGA-FS-A1ZY-06 12 7528424 7528424 C T CD163L1 Missense_Mutation p.G853E 0.61 tolerated(0.06) probably_damaging(1) TCGA-FS-A1ZY-06 12 7947804 7947804 G C NANOG 3'UTR 0.25 TCGA-FS-A1ZY-06 13 111289537 111289537 G A CARKD Silent p.S278S 0.39 TCGA-FS-A1ZY-06 13 97638866 97638866 C T OXGR1 3'UTR 0.70 TCGA-FS-A1ZY-06 14 74874582 74874582 C A SYNDIG1L Silent p.L176L 0.21 TCGA-FS-A1ZY-06 15 99669741 99669741 T G SYNM Silent p.G391G 0.43 TCGA-FS-A1ZY-06 17 10428344 10428344 G A MYH2 Silent p.I1567I 0.91 TCGA-FS-A1ZY-06 17 72278045 72278045 A G DNAI2 Missense_Mutation p.D30G 0.23 deleterious(0) benign(0.072) TCGA-FS-A1ZY-06 17 72768379 72768379 G A NAT9 Silent p.A124A 0.25 TCGA-FS-A1ZY-06 17 78882720 78882720 C T RPTOR Silent p.I837I 0.62 TCGA-FS-A1ZY-06 19 52146852 52146852 C A SIGLEC14 Missense_Mutation p.R362S 0.50 deleterious(0.04) possibly_damaging(0.691) TCGA-FS-A1ZY-06 19 52146853 52146853 C T SIGLEC14 Missense_Mutation p.R362K 0.50 tolerated(0.08) benign(0.334) TCGA-FS-A1ZY-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.70 tolerated(0.06) benign(0.006) TCGA-FS-A1ZY-06 1 145558852 145558852 G A ANKRD35 Silent p.L157L 0.22 TCGA-FS-A1ZY-06 1 145560097 145560097 G A ANKRD35 Missense_Mutation p.E195K 0.21 deleterious(0) possibly_damaging(0.874) TCGA-FS-A1ZY-06 1 152191290 152191290 C T HRNR Missense_Mutation p.G939R 0.25 unknown(0) TCGA-FS-A1ZY-06 1 158669743 158669743 C T OR6K2 Missense_Mutation p.G234S 0.39 tolerated(0.12) possibly_damaging(0.718) TCGA-FS-A1ZY-06 1 171250049 171250049 T C FMO1 Missense_Mutation p.I251T 0.21 deleterious(0.04) benign(0.044) TCGA-FS-A1ZY-06 1 180957437 180957437 G A STX6 Silent p.G178G 0.24 TCGA-FS-A1ZY-06 1 3789135 3789135 A T DFFB Missense_Mutation p.I261L 0.11 tolerated(0.31) benign(0.059) TCGA-FS-A1ZY-06 20 1585500 1585500 C A SIRPB1 Intron 0.84 TCGA-FS-A1ZY-06 22 41980568 41980568 G A PMM1 Missense_Mutation p.T82M 0.14 deleterious(0.01) possibly_damaging(0.611) TCGA-FS-A1ZY-06 2 132021477 132021477 G A POTEE Missense_Mutation p.E817K 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.743) TCGA-FS-A1ZY-06 2 158300486 158300486 G A CYTIP Missense_Mutation p.A16V 0.39 tolerated(1) benign(0) TCGA-FS-A1ZY-06 2 185798353 185798353 G A ZNF804A Silent p.R93R 0.43 TCGA-FS-A1ZY-06 2 190541666 190541666 T G ANKAR Missense_Mutation p.I150M 0.39 deleterious(0) benign(0.352) TCGA-FS-A1ZY-06 2 234368894 234368894 C G DGKD Missense_Mutation p.R962G 0.32 deleterious(0.02) benign(0.031) TCGA-FS-A1ZY-06 4 158224758 158224758 A C GRIA2 Missense_Mutation p.K95T 0.33 tolerated(0.15) probably_damaging(0.925) TCGA-FS-A1ZY-06 5 40691977 40691977 C A PTGER4 Missense_Mutation p.P322T 0.38 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZY-06 6 32163258 32163258 G A NOTCH4 Missense_Mutation p.L1990F 0.43 tolerated_low_confidence(0.54) benign(0.006) TCGA-FS-A1ZY-06 6 49753894 49753894 C A PGK2 Missense_Mutation p.W336L 0.21 deleterious(0.01) possibly_damaging(0.897) TCGA-FS-A1ZY-06 7 2583426 2583426 G A BRAT1 Missense_Mutation p.H201Y 0.24 tolerated(0.07) benign(0.015) TCGA-FS-A1ZY-06 8 143846512 143846512 C T LYNX1 Silent p.G67G 0.46 TCGA-FS-A1ZY-06 8 1497675 1497675 G A DLGAP2 Silent p.S272S 0.48 TCGA-FS-A1ZZ-06 10 102238824 102238824 C T WNT8B Silent p.F28F 0.48 TCGA-FS-A1ZZ-06 10 103912119 103912119 C T NOLC1 5'UTR 0.49 TCGA-FS-A1ZZ-06 10 104816573 104816573 C T CNNM2 Missense_Mutation p.S642F 0.47 tolerated(0.11) benign(0.025) TCGA-FS-A1ZZ-06 10 105926332 105926332 C T WDR96 Missense_Mutation p.D985N 0.55 tolerated(0.16) benign(0.059) TCGA-FS-A1ZZ-06 10 106918692 106918692 C T SORCS3 Missense_Mutation p.P558S 0.38 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZZ-06 10 106918693 106918693 C T SORCS3 Missense_Mutation p.P558L 0.41 deleterious(0) possibly_damaging(0.734) TCGA-FS-A1ZZ-06 10 114136033 114136033 G A ACSL5 5'UTR 0.45 TCGA-FS-A1ZZ-06 10 114177625 114177625 C T ACSL5 Missense_Mutation p.R470C 0.44 deleterious(0) probably_damaging(0.924) TCGA-FS-A1ZZ-06 10 115515126 115515126 C T PLEKHS1 5'UTR 0.50 TCGA-FS-A1ZZ-06 10 118306806 118306806 G A PNLIP Missense_Mutation p.G16E 0.46 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZZ-06 10 118320013 118320013 C T PNLIP Silent p.N382N 0.31 TCGA-FS-A1ZZ-06 10 118389458 118389458 G A PNLIPRP2 Silent p.L194L 0.55 TCGA-FS-A1ZZ-06 10 118969431 118969431 G A KCNK18 Missense_Mutation p.G259E 0.51 tolerated(0.11) benign(0.086) TCGA-FS-A1ZZ-06 10 120917536 120917536 G A SFXN4 Silent p.S133S 0.37 TCGA-FS-A1ZZ-06 10 121618633 121618633 G A MCMBP Missense_Mutation p.R69C 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 10 12238185 12238185 C T CDC123 5'UTR 0.45 TCGA-FS-A1ZZ-06 10 122665480 122665480 C T WDR11 Silent p.L1128L 0.52 TCGA-FS-A1ZZ-06 10 123842253 123842253 C T TACC2 Missense_Mutation p.P80S 0.42 probably_damaging(0.931) TCGA-FS-A1ZZ-06 10 123842254 123842254 C T TACC2 Missense_Mutation p.P80L 0.43 benign(0.267) TCGA-FS-A1ZZ-06 10 123844737 123844737 G A TACC2 Missense_Mutation p.G908S 0.35 possibly_damaging(0.717) TCGA-FS-A1ZZ-06 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.43 tolerated(0.27) benign(0.011) TCGA-FS-A1ZZ-06 10 129866536 129866536 C T PTPRE Silent p.I331I 0.44 TCGA-FS-A1ZZ-06 10 129875896 129875896 G A PTPRE Missense_Mutation p.E581K 0.48 deleterious(0.02) benign(0.219) TCGA-FS-A1ZZ-06 10 134218812 134218812 C T PWWP2B Missense_Mutation p.P270S 0.33 tolerated(0.25) probably_damaging(1) TCGA-FS-A1ZZ-06 10 134906629 134906629 G A GPR123 Intron 0.29 TCGA-FS-A1ZZ-06 10 134906696 134906696 C T GPR123 Intron 0.64 TCGA-FS-A1ZZ-06 10 135345210 135345210 C T CYP2E1 Silent p.F153F 0.52 TCGA-FS-A1ZZ-06 10 16882450 16882450 G A CUBN Missense_Mutation p.S3304F 0.44 tolerated(0.41) benign(0.049) TCGA-FS-A1ZZ-06 10 16918924 16918924 G A CUBN Silent p.F3026F 0.47 TCGA-FS-A1ZZ-06 10 17152983 17152983 G A CUBN Missense_Mutation p.S317F 0.51 deleterious(0) probably_damaging(0.972) TCGA-FS-A1ZZ-06 10 24669980 24669980 G A KIAA1217 Silent p.T179T 0.39 TCGA-FS-A1ZZ-06 10 24809118 24809118 G A KIAA1217 Silent p.L748L 0.44 TCGA-FS-A1ZZ-06 10 24816960 24816960 C T KIAA1217 Silent p.I998I 0.47 TCGA-FS-A1ZZ-06 10 25701203 25701203 C T GPR158 Missense_Mutation p.S379L 0.43 tolerated(0.22) benign(0.007) TCGA-FS-A1ZZ-06 10 27499923 27499923 G A ACBD5 Missense_Mutation p.R342C 0.47 tolerated(0.15) benign(0) TCGA-FS-A1ZZ-06 10 28196667 28196667 G A ARMC4 Silent p.S845S 0.45 TCGA-FS-A1ZZ-06 10 28196681 28196681 G A ARMC4 Missense_Mutation p.R841C 0.53 deleterious(0.01) possibly_damaging(0.759) TCGA-FS-A1ZZ-06 10 28225794 28225794 C T ARMC4 Missense_Mutation p.E705K 0.44 tolerated(0.05) possibly_damaging(0.824) TCGA-FS-A1ZZ-06 10 28283985 28283985 C T ARMC4 Silent p.A29A 0.33 TCGA-FS-A1ZZ-06 10 28284003 28284003 G A ARMC4 Silent p.I23I 0.31 TCGA-FS-A1ZZ-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.29 tolerated(0.05) possibly_damaging(0.691) TCGA-FS-A1ZZ-06 10 28897159 28897159 C T WAC Missense_Mutation p.P322S 0.43 tolerated_low_confidence(0.72) benign(0.012) TCGA-FS-A1ZZ-06 10 33502610 33502610 C T NRP1 Missense_Mutation p.G440R 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 10 37507968 37507968 G A ANKRD30A Missense_Mutation p.E1054K 0.50 deleterious(0) possibly_damaging(0.636) TCGA-FS-A1ZZ-06 10 43089079 43089079 G A ZNF33B Missense_Mutation p.P440L 0.56 deleterious(0.04) probably_damaging(1) TCGA-FS-A1ZZ-06 10 43312841 43312841 G A BMS1 Missense_Mutation p.D827N 0.27 tolerated(0.21) benign(0.004) TCGA-FS-A1ZZ-06 10 43596097 43596097 C T RET Silent p.I88I 0.50 TCGA-FS-A1ZZ-06 10 43615600 43615600 C T RET Silent p.F893F 0.37 TCGA-FS-A1ZZ-06 10 44139482 44139482 C T ZNF32 3'UTR 0.52 TCGA-FS-A1ZZ-06 10 45473304 45473304 C T C10orf10 Missense_Mutation p.A59T 0.36 tolerated(0.25) benign(0.025) TCGA-FS-A1ZZ-06 10 46159002 46159002 G A ZFAND4 Nonsense_Mutation p.R58* 0.34 TCGA-FS-A1ZZ-06 10 49400782 49400782 C T FRMPD2 Missense_Mutation p.D704N 0.46 tolerated(0.08) possibly_damaging(0.632) TCGA-FS-A1ZZ-06 10 50121985 50121985 G A LRRC18 Silent p.F72F 0.49 TCGA-FS-A1ZZ-06 10 50531107 50531107 C T C10orf71 Missense_Mutation p.P173S 0.44 tolerated(0.61) possibly_damaging(0.487) TCGA-FS-A1ZZ-06 10 50594888 50594888 C T DRGX Missense_Mutation p.R89K 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 10 50947747 50947747 T A OGDHL Missense_Mutation p.N760I 0.40 deleterious(0.02) benign(0.014) TCGA-FS-A1ZZ-06 10 52005019 52005019 C T ASAH2 Missense_Mutation p.R108Q 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZZ-06 10 5248263 5248263 G A AKR1C4 Missense_Mutation p.G158E 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZZ-06 10 60124590 60124590 C T UBE2D1 Silent p.L86L 0.46 TCGA-FS-A1ZZ-06 10 61552677 61552677 A G CCDC6 Nonstop_Mutation p.*475Qext*6 0.37 TCGA-FS-A1ZZ-06 10 61819725 61819725 C T ANK3 Intron 0.37 TCGA-FS-A1ZZ-06 10 61831521 61831521 C T ANK3 Missense_Mutation p.E3040K 0.45 benign(0.017) TCGA-FS-A1ZZ-06 10 61973199 61973199 G A ANK3 Nonsense_Mutation p.R323* 0.55 TCGA-FS-A1ZZ-06 10 62021678 62021678 C T ANK3 Missense_Mutation p.G246E 0.46 probably_damaging(1) TCGA-FS-A1ZZ-06 10 63188716 63188716 G A TMEM26 Silent p.F191F 0.42 TCGA-FS-A1ZZ-06 10 63852113 63852113 G T ARID5B Missense_Mutation p.G964V 0.55 tolerated(0.12) benign(0.001) TCGA-FS-A1ZZ-06 10 63852711 63852711 C T ARID5B Silent p.Y1163Y 0.42 TCGA-FS-A1ZZ-06 10 64973570 64973570 G A JMJD1C Missense_Mutation p.P786L 0.59 deleterious(0) possibly_damaging(0.694) TCGA-FS-A1ZZ-06 10 6527122 6527122 C T PRKCQ Missense_Mutation p.G337E 0.48 tolerated(0.08) benign(0.006) TCGA-FS-A1ZZ-06 10 70182479 70182479 G A DNA2 Missense_Mutation p.P879S 0.36 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZZ-06 10 70931081 70931081 T C VPS26A 3'UTR 0.56 TCGA-FS-A1ZZ-06 10 71010086 71010086 C T HKDC1 Silent p.N537N 0.40 TCGA-FS-A1ZZ-06 10 71164841 71164841 C T TACR2 Splice_Site p.X313_splice 0.46 TCGA-FS-A1ZZ-06 10 71174875 71174875 G A TACR2 Missense_Mutation p.P138L 0.42 deleterious(0) probably_damaging(0.957) TCGA-FS-A1ZZ-06 10 71689835 71689835 G A COL13A1 Missense_Mutation p.G497R 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 10 72289707 72289707 C T PALD1 Silent p.S117S 0.50 TCGA-FS-A1ZZ-06 10 72324221 72324221 C T PALD1 Silent p.L788L 0.43 TCGA-FS-A1ZZ-06 10 72468448 72468448 G A ADAMTS14 Missense_Mutation p.E262K 0.46 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 10 72498703 72498703 G A ADAMTS14 Missense_Mutation p.G572R 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 10 73055576 73055576 G A UNC5B Silent p.L728L 0.71 TCGA-FS-A1ZZ-06 10 73437276 73437276 C T CDH23 Silent p.I118I 0.25 TCGA-FS-A1ZZ-06 10 7618605 7618605 C T ITIH5 Missense_Mutation p.E597K 0.38 deleterious(0.03) probably_damaging(0.952) TCGA-FS-A1ZZ-06 10 78846346 78846346 G T KCNMA1 Missense_Mutation p.S447Y 0.42 tolerated(0.79) possibly_damaging(0.694) TCGA-FS-A1ZZ-06 10 78850189 78850189 C T KCNMA1 Missense_Mutation p.D435N 0.52 tolerated(0.19) probably_damaging(0.999) TCGA-FS-A1ZZ-06 10 81701771 81701771 G A SFTPD Silent p.G163G 0.38 TCGA-FS-A1ZZ-06 10 82122713 82122713 G A DYDC2 Missense_Mutation p.E66K 0.41 tolerated(0.37) benign(0) TCGA-FS-A1ZZ-06 10 84118499 84118499 G A NRG3 Silent p.T276T 0.55 TCGA-FS-A1ZZ-06 10 85968030 85968030 G A CDHR1 Missense_Mutation p.G355E 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-FS-A1ZZ-06 10 87406911 87406911 C T GRID1 Intron 0.45 TCGA-FS-A1ZZ-06 10 88417789 88417789 G A OPN4 Silent p.Q108Q 0.49 TCGA-FS-A1ZZ-06 10 88476342 88476342 C T LDB3 Missense_Mutation p.S502F 0.38 deleterious(0) probably_damaging(0.974) TCGA-FS-A1ZZ-06 10 89550090 89550090 G A ATAD1 Missense_Mutation p.S120F 0.42 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZZ-06 10 90497538 90497538 G A LIPK Missense_Mutation p.M272I 0.41 deleterious(0.03) benign(0.045) TCGA-FS-A1ZZ-06 10 90591670 90591670 G A ANKRD22 Silent p.I45I 0.46 TCGA-FS-A1ZZ-06 10 95791437 95791437 G A PLCE1 Missense_Mutation p.D212N 0.40 deleterious_low_confidence(0.02) benign(0.01) TCGA-FS-A1ZZ-06 10 95987188 95987188 G A PLCE1 Missense_Mutation p.M645I 0.44 tolerated(0.05) probably_damaging(0.997) TCGA-FS-A1ZZ-06 10 96064324 96064324 G A PLCE1 Silent p.K1848K 0.40 TCGA-FS-A1ZZ-06 10 96495278 96495278 C T CYP2C18 3'UTR 0.59 TCGA-FS-A1ZZ-06 10 96701699 96701699 G A CYP2C9 Missense_Mutation p.E85K 0.46 deleterious(0) probably_damaging(0.95) TCGA-FS-A1ZZ-06 10 97816608 97816608 T C CCNJ Missense_Mutation p.L144P 0.51 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 10 98820540 98820540 C T SLIT1 Silent p.Q266Q 0.64 TCGA-FS-A1ZZ-06 10 99359866 99359866 G A HOGA1 Missense_Mutation p.D216N 0.42 tolerated(0.23) benign(0.004) TCGA-FS-A1ZZ-06 11 100933403 100933403 G A PGR Missense_Mutation p.P663S 0.91 tolerated(0.24) benign(0.032) TCGA-FS-A1ZZ-06 11 101375405 101375405 C T TRPC6 Missense_Mutation p.E99K 0.96 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 11 102595587 102595587 G A MMP8 5'UTR 0.85 TCGA-FS-A1ZZ-06 11 103086451 103086451 C T DYNC2H1 Missense_Mutation p.A2899V 1.00 possibly_damaging(0.599) TCGA-FS-A1ZZ-06 11 105804641 105804641 G A GRIA4 Missense_Mutation p.G747E 0.76 deleterious(0.03) probably_damaging(0.974) TCGA-FS-A1ZZ-06 11 106810605 106810605 G A GUCY1A2 Missense_Mutation p.R263W 0.84 deleterious(0.01) possibly_damaging(0.663) TCGA-FS-A1ZZ-06 11 107431577 107431577 C T ALKBH8 Missense_Mutation p.E15K 0.95 tolerated(0.26) benign(0.042) TCGA-FS-A1ZZ-06 11 108382077 108382077 C T EXPH5 Missense_Mutation p.G1386D 0.88 tolerated(0.05) possibly_damaging(0.81) TCGA-FS-A1ZZ-06 11 1087502 1087502 G A MUC2 Missense_Mutation p.G1085S 0.49 probably_damaging(1) TCGA-FS-A1ZZ-06 11 110035405 110035405 C T ZC3H12C Missense_Mutation p.P532L 0.90 deleterious(0.04) benign(0.219) TCGA-FS-A1ZZ-06 11 110134900 110134900 G A RDX Silent p.F84F 0.96 TCGA-FS-A1ZZ-06 11 116692365 116692365 G A APOA4 Missense_Mutation p.P137S 0.86 deleterious(0.03) possibly_damaging(0.84) TCGA-FS-A1ZZ-06 11 118344107 118344107 C T KMT2A Nonsense_Mutation p.R745* 0.94 TCGA-FS-A1ZZ-06 11 11987475 11987475 C T DKK3 Silent p.E237E 0.44 TCGA-FS-A1ZZ-06 11 121384872 121384872 C T SORL1 Silent p.I351I 0.90 TCGA-FS-A1ZZ-06 11 123814495 123814495 G A OR6T1 Silent p.F17F 0.86 TCGA-FS-A1ZZ-06 11 1270696 1270696 G A MUC5B Missense_Mutation p.D4196N 0.45 possibly_damaging(0.661) TCGA-FS-A1ZZ-06 11 130343277 130343277 G A ADAMTS15 Missense_Mutation p.R805Q 0.89 tolerated(0.22) benign(0.043) TCGA-FS-A1ZZ-06 11 14284316 14284316 G A RP11-21L19.1 3'Flank 0.56 TCGA-FS-A1ZZ-06 11 16812573 16812573 C T PLEKHA7 Silent p.V973V 0.42 TCGA-FS-A1ZZ-06 11 17483175 17483175 G A ABCC8 Silent p.A259A 0.46 TCGA-FS-A1ZZ-06 11 18456337 18456337 C T LDHC Missense_Mutation p.R157C 0.43 tolerated(0.09) probably_damaging(0.964) TCGA-FS-A1ZZ-06 11 18956018 18956018 G A MRGPRX1 Missense_Mutation p.S105F 0.28 tolerated(0.13) benign(0.013) TCGA-FS-A1ZZ-06 11 22257816 22257816 C T ANO5 Silent p.L252L 0.41 TCGA-FS-A1ZZ-06 11 22747927 22747927 G A GAS2 Nonsense_Mutation p.W119* 0.48 TCGA-FS-A1ZZ-06 11 24759789 24759789 G A LUZP2 Missense_Mutation p.E92K 0.53 deleterious(0.01) possibly_damaging(0.616) TCGA-FS-A1ZZ-06 11 26620405 26620405 G A ANO3 Missense_Mutation p.E511K 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 11 26664794 26664794 T G ANO3 Missense_Mutation p.L781V 0.48 tolerated(0.23) possibly_damaging(0.803) TCGA-FS-A1ZZ-06 11 2683068 2683068 G A KCNQ1 Intron 0.35 TCGA-FS-A1ZZ-06 11 2683069 2683069 G A KCNQ1 Intron 0.35 TCGA-FS-A1ZZ-06 11 27016437 27016437 G A FIBIN Missense_Mutation p.E122K 0.46 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FS-A1ZZ-06 11 308250 308250 G A IFITM2 Missense_Mutation p.E20K 0.45 deleterious(0.02) probably_damaging(0.943) TCGA-FS-A1ZZ-06 11 31115658 31115658 C T DCDC1 Missense_Mutation p.S686N 0.45 tolerated(0.05) benign(0.078) TCGA-FS-A1ZZ-06 11 32460426 32460426 G A WT1 5'Flank 0.29 TCGA-FS-A1ZZ-06 11 35456238 35456238 C T PAMR1 Missense_Mutation p.G500E 0.50 deleterious(0.04) possibly_damaging(0.691) TCGA-FS-A1ZZ-06 11 3680495 3680495 G A ART1 Missense_Mutation p.E18K 0.51 tolerated(0.16) benign(0.169) TCGA-FS-A1ZZ-06 11 3781853 3781853 G A NUP98 Silent p.L364L 0.35 TCGA-FS-A1ZZ-06 11 40136969 40136969 G A LRRC4C Missense_Mutation p.H292Y 0.51 tolerated(1) benign(0) TCGA-FS-A1ZZ-06 11 429596 429596 C T ANO9 Missense_Mutation p.D297N 0.43 tolerated(0.21) benign(0.015) TCGA-FS-A1ZZ-06 11 4406957 4406957 G A TRIM21 Missense_Mutation p.P329L 0.56 tolerated(0.06) probably_damaging(1) TCGA-FS-A1ZZ-06 11 4566853 4566853 C T OR52M1 Missense_Mutation p.R145C 0.36 deleterious(0.01) benign(0.009) TCGA-FS-A1ZZ-06 11 45672072 45672072 G A CHST1 Silent p.F134F 0.45 TCGA-FS-A1ZZ-06 11 45924119 45924119 C T MAPK8IP1 Silent p.I267I 0.41 TCGA-FS-A1ZZ-06 11 4608812 4608812 G A OR52I2 Missense_Mutation p.G257D 0.34 tolerated(0.33) benign(0.049) TCGA-FS-A1ZZ-06 11 4661092 4661092 C T OR51D1 Silent p.F24F 0.45 TCGA-FS-A1ZZ-06 11 47364144 47364144 C T MYBPC3 Missense_Mutation p.E537K 0.71 tolerated(0.19) probably_damaging(0.985) TCGA-FS-A1ZZ-06 11 47689234 47689234 C T AGBL2 Silent p.K743K 0.42 TCGA-FS-A1ZZ-06 11 47833673 47833673 G A NUP160 Silent p.F728F 0.45 TCGA-FS-A1ZZ-06 11 4824732 4824732 G A OR52R1 Silent p.I293I 0.40 TCGA-FS-A1ZZ-06 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.44 deleterious(0.04) possibly_damaging(0.776) TCGA-FS-A1ZZ-06 11 4944777 4944777 G A OR51G1 Missense_Mutation p.R265C 0.42 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 11 49597902 49597902 C T RP11-707M1.1 RNA 0.59 TCGA-FS-A1ZZ-06 11 49598031 49598031 G A RP11-707M1.1 RNA 0.50 TCGA-FS-A1ZZ-06 11 4976850 4976850 G A OR51A2 Missense_Mutation p.P32S 0.45 deleterious(0.02) possibly_damaging(0.573) TCGA-FS-A1ZZ-06 11 5068617 5068617 C T OR52J3 Missense_Mutation p.L288F 0.49 deleterious(0.01) possibly_damaging(0.898) TCGA-FS-A1ZZ-06 11 51412363 51412363 G A OR4A5 Silent p.V11V 0.36 TCGA-FS-A1ZZ-06 11 5142614 5142614 G A OR52A4 RNA 0.43 TCGA-FS-A1ZZ-06 11 5372815 5372815 C T OR51B6 Silent p.F26F 0.59 TCGA-FS-A1ZZ-06 11 5443766 5443766 G A OR51Q1 Missense_Mutation p.M112I 0.46 tolerated(0.08) benign(0.049) TCGA-FS-A1ZZ-06 11 5475583 5475583 C T OR51I2 Missense_Mutation p.P289S 0.46 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 11 5510719 5510719 C T OR52D1 Silent p.S261S 0.43 TCGA-FS-A1ZZ-06 11 55703181 55703181 A G OR5I1 Silent p.S232S 0.42 TCGA-FS-A1ZZ-06 11 55703736 55703736 C T OR5I1 Silent p.L47L 0.45 TCGA-FS-A1ZZ-06 11 55735759 55735759 C T OR10AG1 Missense_Mutation p.E61K 0.44 deleterious(0) possibly_damaging(0.857) TCGA-FS-A1ZZ-06 11 56057790 56057790 A T OR8H1 Missense_Mutation p.F250Y 0.55 deleterious(0.04) benign(0.107) TCGA-FS-A1ZZ-06 11 5618102 5618102 G A TRIM6 5'UTR 0.35 TCGA-FS-A1ZZ-06 11 5626672 5626672 G A TRIM6 Missense_Mutation p.E237K 0.41 tolerated(0.27) benign(0.203) TCGA-FS-A1ZZ-06 11 5664584 5664584 C T TRIM34 Missense_Mutation p.S371F 0.47 tolerated(0.07) benign(0.071) TCGA-FS-A1ZZ-06 11 56756472 56756472 C T OR5AK2 Silent p.F28F 0.37 TCGA-FS-A1ZZ-06 11 5776411 5776411 G A OR52N4 Silent p.G147G 0.48 TCGA-FS-A1ZZ-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZZ-06 11 58126218 58126218 C T OR5B17 Missense_Mutation p.E109K 0.51 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FS-A1ZZ-06 11 58602185 58602185 C T GLYATL2 Missense_Mutation p.G201E 0.39 deleterious(0.01) probably_damaging(0.961) TCGA-FS-A1ZZ-06 11 5862509 5862509 G A OR52E6 Missense_Mutation p.L207F 0.37 tolerated(0.37) possibly_damaging(0.784) TCGA-FS-A1ZZ-06 11 58722348 58722348 A G GLYATL1 Missense_Mutation p.K129E 0.33 tolerated(0.19) benign(0.076) TCGA-FS-A1ZZ-06 11 58877098 58877098 C T FAM111B 5'UTR 0.48 TCGA-FS-A1ZZ-06 11 60233401 60233401 G A MS4A1 Missense_Mutation p.G115E 0.45 tolerated(0.06) possibly_damaging(0.606) TCGA-FS-A1ZZ-06 11 60702236 60702236 G A TMEM132A Silent p.E613E 0.44 TCGA-FS-A1ZZ-06 11 618892 618892 C T CDHR5 Missense_Mutation p.G556E 0.49 tolerated(0.27) probably_damaging(0.969) TCGA-FS-A1ZZ-06 11 62285540 62285540 G A AHNAK Missense_Mutation p.P5450L 0.39 probably_damaging(0.991) TCGA-FS-A1ZZ-06 11 62301352 62301352 T A AHNAK Missense_Mutation p.E179D 0.50 probably_damaging(0.997) TCGA-FS-A1ZZ-06 11 6261362 6261362 G A CNGA4 Nonsense_Mutation p.W113* 0.41 TCGA-FS-A1ZZ-06 11 62911098 62911098 G T SLC22A24 Missense_Mutation p.P52T 0.69 tolerated(0.18) benign(0.104) TCGA-FS-A1ZZ-06 11 63486256 63486256 C T RTN3 Silent p.N94N 0.52 TCGA-FS-A1ZZ-06 11 64026159 64026159 C T PLCB3 Silent p.I409I 0.37 TCGA-FS-A1ZZ-06 11 6424402 6424402 G A APBB1 Silent p.P359P 0.38 TCGA-FS-A1ZZ-06 11 64534462 64534462 G A SF1 Missense_Mutation p.P623S 0.56 deleterious_low_confidence(0.04) unknown(0) TCGA-FS-A1ZZ-06 11 65172502 65172502 G A FRMD8 Silent p.R413R 0.41 TCGA-FS-A1ZZ-06 11 65268805 65268805 C T MALAT1 RNA 0.39 TCGA-FS-A1ZZ-06 11 65273927 65273927 G A MALAT1 RNA 0.36 TCGA-FS-A1ZZ-06 11 65385973 65385973 C T PCNXL3 Silent p.V380V 0.42 TCGA-FS-A1ZZ-06 11 65408595 65408595 C T SIPA1 Missense_Mutation p.P68L 0.56 tolerated(0.15) possibly_damaging(0.576) TCGA-FS-A1ZZ-06 11 65714972 65714972 G A TSGA10IP RNA 0.43 TCGA-FS-A1ZZ-06 11 65793332 65793332 G A CATSPER1 Silent p.S173S 0.58 TCGA-FS-A1ZZ-06 11 66190155 66190155 C T NPAS4 Silent p.F147F 0.47 TCGA-FS-A1ZZ-06 11 66192549 66192549 G A NPAS4 Missense_Mutation p.D730N 0.47 tolerated(0.23) benign(0.01) TCGA-FS-A1ZZ-06 11 67079175 67079175 C T SSH3 Silent p.S599S 0.62 TCGA-FS-A1ZZ-06 11 67235031 67235031 G A TMEM134 Silent p.S90S 0.48 TCGA-FS-A1ZZ-06 11 69063750 69063750 G A MYEOV Missense_Mutation p.R278K 0.30 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-FS-A1ZZ-06 11 69625228 69625228 C T FGF3 Missense_Mutation p.E189K 0.69 deleterious(0) probably_damaging(0.922) TCGA-FS-A1ZZ-06 11 7020972 7020972 G A ZNF214 3'UTR 0.62 TCGA-FS-A1ZZ-06 11 7091629 7091629 G C NLRP14 Missense_Mutation p.G1030R 0.31 deleterious(0) possibly_damaging(0.86) TCGA-FS-A1ZZ-06 11 71850928 71850928 C T FOLR3 3'UTR 0.57 TCGA-FS-A1ZZ-06 11 71944134 71944134 C T INPPL1 Missense_Mutation p.S656F 0.52 deleterious(0) possibly_damaging(0.841) TCGA-FS-A1ZZ-06 11 72012885 72012885 G A CLPB Missense_Mutation p.P461S 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZZ-06 11 75152259 75152259 G A GDPD5 Silent p.T474T 0.26 TCGA-FS-A1ZZ-06 11 75153561 75153561 G A GDPD5 Silent p.S338S 0.38 TCGA-FS-A1ZZ-06 11 76062171 76062171 G A PRKRIR Missense_Mutation p.P675S 0.40 deleterious(0.01) possibly_damaging(0.79) TCGA-FS-A1ZZ-06 11 76893486 76893486 G A MYO7A Nonsense_Mutation p.W1042* 0.37 TCGA-FS-A1ZZ-06 11 77728220 77728220 A G KCTD14 Missense_Mutation p.F63L 0.55 tolerated(0.26) benign(0.282) TCGA-FS-A1ZZ-06 11 77921051 77921053 AGA - USP35 In_Frame_Del p.K718del 0.58 TCGA-FS-A1ZZ-06 11 7818403 7818403 G A OR5P2 Silent p.I29I 0.48 TCGA-FS-A1ZZ-06 11 78380168 78380168 C T TENM4 Missense_Mutation p.D2408N 0.40 tolerated(0.08) benign(0.424) TCGA-FS-A1ZZ-06 11 7847181 7847181 G A OR5P3 Silent p.F113F 0.42 TCGA-FS-A1ZZ-06 11 84996306 84996306 G A DLG2 Silent p.S48S 0.94 TCGA-FS-A1ZZ-06 11 85436343 85436343 G A SYTL2 Missense_Mutation p.S386L 0.88 deleterious(0) possibly_damaging(0.889) TCGA-FS-A1ZZ-06 11 93754684 93754684 G A HEPHL1 Silent p.G50G 0.94 TCGA-FS-A1ZZ-06 11 93912790 93912790 C T PANX1 Missense_Mutation p.H190Y 0.91 tolerated(1) benign(0.029) TCGA-FS-A1ZZ-06 11 9446716 9446716 T C IPO7 Silent p.F414F 0.40 TCGA-FS-A1ZZ-06 12 100751249 100751249 A T SLC17A8 Missense_Mutation p.D27V 0.37 tolerated(0.11) possibly_damaging(0.739) TCGA-FS-A1ZZ-06 12 101295595 101295595 G A ANO4 Missense_Mutation p.G11E 0.27 tolerated_low_confidence(0.13) benign(0.017) TCGA-FS-A1ZZ-06 12 101333101 101333101 G A ANO4 Missense_Mutation p.D22N 0.39 deleterious_low_confidence(0.04) benign(0.009) TCGA-FS-A1ZZ-06 12 101750436 101750436 C T UTP20 Silent p.S1833S 0.41 TCGA-FS-A1ZZ-06 12 101880268 101880268 A T SPIC Nonsense_Mutation p.K156* 0.37 TCGA-FS-A1ZZ-06 12 102025435 102025435 G A MYBPC1 Missense_Mutation p.D101N 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A1ZZ-06 12 103696155 103696155 G A C12orf42 Missense_Mutation p.P272S 0.48 tolerated(0.1) possibly_damaging(0.548) TCGA-FS-A1ZZ-06 12 103696160 103696160 C T C12orf42 Missense_Mutation p.G270E 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZZ-06 12 108685969 108685969 C A CMKLR1 Missense_Mutation p.K257N 0.33 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZZ-06 12 109723114 109723114 T C FOXN4 Missense_Mutation p.N299S 0.30 deleterious(0.03) benign(0.375) TCGA-FS-A1ZZ-06 12 10999761 10999761 G A PRR4 Silent p.L102L 0.46 TCGA-FS-A1ZZ-06 12 111321968 111321968 G A CCDC63 Missense_Mutation p.E330K 0.46 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZZ-06 12 111785488 111785488 G A CUX2 Missense_Mutation p.E1274K 0.30 tolerated_low_confidence(0.15) benign(0.103) TCGA-FS-A1ZZ-06 12 111785489 111785489 A T CUX2 Missense_Mutation p.E1274V 0.31 deleterious_low_confidence(0.01) benign(0.045) TCGA-FS-A1ZZ-06 12 112308966 112308966 T C MAPKAPK5 Silent p.P187P 0.45 TCGA-FS-A1ZZ-06 12 112677814 112677814 C T HECTD4 Missense_Mutation p.C1513Y 0.50 probably_damaging(0.964) TCGA-FS-A1ZZ-06 12 113376405 113376405 G A OAS3 Missense_Mutation p.E24K 0.35 tolerated(0.53) benign(0.084) TCGA-FS-A1ZZ-06 12 113553507 113553507 G A RASAL1 Silent p.L312L 0.41 TCGA-FS-A1ZZ-06 12 11420906 11420906 G A PRB3 Missense_Mutation p.P93S 0.45 tolerated(0.05) unknown(0) TCGA-FS-A1ZZ-06 12 117696239 117696239 C T NOS1 Missense_Mutation p.E832K 0.41 tolerated(0.14) probably_damaging(0.928) TCGA-FS-A1ZZ-06 12 118016958 118016958 C T KSR2 Missense_Mutation p.G431R 0.51 deleterious(0.03) possibly_damaging(0.84) TCGA-FS-A1ZZ-06 12 118199276 118199276 C T KSR2 Missense_Mutation p.G176R 0.42 tolerated(1) probably_damaging(0.946) TCGA-FS-A1ZZ-06 12 118627773 118627773 A T TAOK3 Intron 0.42 TCGA-FS-A1ZZ-06 12 120575762 120575762 G A GCN1L1 Silent p.I2112I 0.43 TCGA-FS-A1ZZ-06 12 121014413 121014413 A C RNF10 Silent p.R794R 0.40 TCGA-FS-A1ZZ-06 12 122181600 122181600 T C TMEM120B Silent p.S45S 0.46 TCGA-FS-A1ZZ-06 12 122296848 122296848 G A HPD 5'Flank 0.50 TCGA-FS-A1ZZ-06 12 123214031 123214031 G A HCAR1 Missense_Mutation p.P286S 0.43 tolerated(0.18) probably_damaging(0.998) TCGA-FS-A1ZZ-06 12 123915204 123915204 C T RILPL2 Silent p.V114V 0.42 TCGA-FS-A1ZZ-06 12 124323164 124323164 C T DNAH10 Silent p.F1570F 0.47 TCGA-FS-A1ZZ-06 12 124371737 124371737 G A DNAH10 Missense_Mutation p.E2840K 0.72 probably_damaging(0.956) TCGA-FS-A1ZZ-06 12 124420127 124420127 G A DNAH10 3'UTR 0.56 TCGA-FS-A1ZZ-06 12 124422086 124422086 G A CCDC92 Missense_Mutation p.S172F 0.38 deleterious(0.01) possibly_damaging(0.724) TCGA-FS-A1ZZ-06 12 125834317 125834317 C T TMEM132B Silent p.I124I 0.50 TCGA-FS-A1ZZ-06 12 126138670 126138670 C T TMEM132B Missense_Mutation p.P884L 0.43 tolerated(0.16) probably_damaging(0.979) TCGA-FS-A1ZZ-06 12 130015696 130015696 G A TMEM132D Silent p.S341S 0.45 TCGA-FS-A1ZZ-06 12 130648761 130648761 G A FZD10 Missense_Mutation p.R425K 0.43 tolerated(0.93) benign(0.023) TCGA-FS-A1ZZ-06 12 132394824 132394824 C T ULK1 Silent p.L278L 0.49 TCGA-FS-A1ZZ-06 12 132399011 132399011 C T ULK1 Silent p.F454F 0.44 TCGA-FS-A1ZZ-06 12 132405934 132405934 C T ULK1 3'UTR 0.52 TCGA-FS-A1ZZ-06 12 132491260 132491260 C T EP400 Missense_Mutation p.P1048S 0.38 unknown(0) TCGA-FS-A1ZZ-06 12 18435229 18435229 G A PIK3C2G Missense_Mutation p.D72N 0.45 tolerated_low_confidence(0.24) benign(0.01) TCGA-FS-A1ZZ-06 12 18889170 18889170 C T PLCZ1 Silent p.V40V 0.50 TCGA-FS-A1ZZ-06 12 21693416 21693416 G A GYS2 Silent p.R579R 0.48 TCGA-FS-A1ZZ-06 12 2224556 2224556 C T CACNA1C Silent p.T72T 0.75 TCGA-FS-A1ZZ-06 12 22826574 22826574 C T ETNK1 Nonsense_Mutation p.Q398* 0.49 TCGA-FS-A1ZZ-06 12 27089698 27089706 AACAAACAC T ASUN Frame_Shift_Del p.V11Sfs*18 0.28 TCGA-FS-A1ZZ-06 12 301744 301744 C T SLC6A12 Nonsense_Mutation p.W534* 0.51 TCGA-FS-A1ZZ-06 12 309836 309836 C T SLC6A12 Missense_Mutation p.G231E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 12 32135303 32135303 G T KIAA1551 Missense_Mutation p.V472L 0.39 tolerated(0.13) benign(0.009) TCGA-FS-A1ZZ-06 12 43862493 43862493 C T ADAMTS20 Missense_Mutation p.G378D 0.47 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 12 44142338 44142338 G A PUS7L Missense_Mutation p.P329S 0.43 deleterious(0.02) benign(0.236) TCGA-FS-A1ZZ-06 12 46244715 46244715 C T ARID2 Nonsense_Mutation p.Q937* 0.41 TCGA-FS-A1ZZ-06 12 46244787 46244787 C T ARID2 Nonsense_Mutation p.Q961* 0.44 TCGA-FS-A1ZZ-06 12 47629524 47629524 C T PCED1B Silent p.H226H 0.43 TCGA-FS-A1ZZ-06 12 47629761 47629761 C T PCED1B Silent p.F305F 0.50 TCGA-FS-A1ZZ-06 12 48374376 48374376 G A COL2A1 Silent p.A862A 0.29 TCGA-FS-A1ZZ-06 12 48919622 48919622 G A OR8S1 Missense_Mutation p.D70N 0.57 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 12 49314977 49314977 G A CCDC65 Silent p.E402E 0.46 TCGA-FS-A1ZZ-06 12 49390542 49390542 C T DDN Missense_Mutation p.G706E 0.42 tolerated_low_confidence(0.05) benign(0.018) TCGA-FS-A1ZZ-06 12 49433379 49433379 G A KMT2D Silent p.L2690L 0.57 TCGA-FS-A1ZZ-06 12 49448351 49448351 G A KMT2D Silent p.F120F 0.40 TCGA-FS-A1ZZ-06 12 49690308 49690308 G A PRPH Missense_Mutation p.E234K 0.42 deleterious(0.02) probably_damaging(0.951) TCGA-FS-A1ZZ-06 12 49942799 49942799 G A KCNH3 Silent p.G437G 0.38 TCGA-FS-A1ZZ-06 12 50031265 50031265 G A PRPF40B Missense_Mutation p.E525K 0.56 deleterious(0) possibly_damaging(0.862) TCGA-FS-A1ZZ-06 12 51685437 51685437 C T BIN2 Missense_Mutation p.E485K 0.43 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-FS-A1ZZ-06 12 51888738 51888738 C T SLC4A8 Missense_Mutation p.R927C 0.55 deleterious(0) probably_damaging(0.958) TCGA-FS-A1ZZ-06 12 52566020 52566020 G A KRT80 Silent p.I380I 0.37 TCGA-FS-A1ZZ-06 12 52648149 52648149 C T KRT121P Splice_Site 0.46 TCGA-FS-A1ZZ-06 12 52756740 52756740 C T KRT85 Silent p.V325V 0.44 TCGA-FS-A1ZZ-06 12 52840992 52840992 C T KRT6B Silent p.R559R 0.39 TCGA-FS-A1ZZ-06 12 52845376 52845376 C T KRT6B Missense_Mutation p.E163K 0.16 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZZ-06 12 52867035 52867035 C T KRT6C Missense_Mutation p.E163K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 12 52881690 52881690 G A KRT6A Silent p.V503V 0.46 TCGA-FS-A1ZZ-06 12 52908824 52908824 G A KRT5 Nonsense_Mutation p.R559* 0.47 TCGA-FS-A1ZZ-06 12 52962029 52962029 C T KRT74 Missense_Mutation p.E427K 0.41 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZZ-06 12 52962062 52962062 C T KRT74 Missense_Mutation p.E416K 0.47 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZZ-06 12 53072416 53072416 C T KRT1 Missense_Mutation p.R239Q 0.41 tolerated(0.1) probably_damaging(0.916) TCGA-FS-A1ZZ-06 12 53207559 53207559 C T KRT4 Missense_Mutation p.G95D 0.37 deleterious(0.01) possibly_damaging(0.642) TCGA-FS-A1ZZ-06 12 53594188 53594188 G A ITGB7 Silent p.L14L 0.50 TCGA-FS-A1ZZ-06 12 54107533 54107533 G A CALCOCO1 Silent p.P581P 0.52 TCGA-FS-A1ZZ-06 12 54333195 54333195 G A HOXC13 Missense_Mutation p.A169T 0.40 tolerated(0.08) benign(0.251) TCGA-FS-A1ZZ-06 12 54799659 54799659 C T ITGA5 Missense_Mutation p.E320K 0.38 deleterious(0) benign(0.338) TCGA-FS-A1ZZ-06 12 55250568 55250568 G A MUCL1 Missense_Mutation p.D39N 0.44 tolerated_low_confidence(0.18) unknown(0) TCGA-FS-A1ZZ-06 12 55615027 55615027 C T OR10A7 Silent p.F73F 0.46 TCGA-FS-A1ZZ-06 12 55725661 55725661 C T OR6C3 Silent p.F59F 0.44 TCGA-FS-A1ZZ-06 12 56090680 56090680 C T ITGA7 Intron 0.49 TCGA-FS-A1ZZ-06 12 56231370 56231370 C T MMP19 Nonsense_Mutation p.W386* 0.46 TCGA-FS-A1ZZ-06 12 56232287 56232287 C T MMP19 Intron 0.51 TCGA-FS-A1ZZ-06 12 57976384 57976384 G A KIF5A Splice_Site p.X998_splice 0.45 TCGA-FS-A1ZZ-06 12 58111979 58111979 C T OS9 Silent p.V395V 0.44 TCGA-FS-A1ZZ-06 12 65471619 65471619 C T WIF1 Missense_Mutation p.E102K 0.53 tolerated(0.07) probably_damaging(0.996) TCGA-FS-A1ZZ-06 12 66765699 66765699 G A GRIP1 Silent p.I877I 0.41 TCGA-FS-A1ZZ-06 12 66771023 66771023 C T GRIP1 Silent p.E836E 0.46 TCGA-FS-A1ZZ-06 12 70004284 70004284 T G LRRC10 Missense_Mutation p.D112A 0.51 tolerated(0.69) benign(0.174) TCGA-FS-A1ZZ-06 12 70932012 70932012 C T PTPRB Splice_Site p.X1957_splice 0.63 TCGA-FS-A1ZZ-06 12 70949790 70949790 G A PTPRB Missense_Mutation p.S1618F 0.54 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZZ-06 12 71032839 71032839 C T PTPRR 3'UTR 0.33 TCGA-FS-A1ZZ-06 12 71095033 71095033 G A PTPRR Missense_Mutation p.P360S 0.40 tolerated(0.6) benign(0.003) TCGA-FS-A1ZZ-06 12 7469768 7469768 G A ACSM4 Missense_Mutation p.G219E 0.35 deleterious(0.05) possibly_damaging(0.484) TCGA-FS-A1ZZ-06 12 7475888 7475888 G A ACSM4 Missense_Mutation p.G395E 0.33 deleterious(0.01) benign(0.043) TCGA-FS-A1ZZ-06 12 7632467 7632467 A T CD163 Nonstop_Mutation p.*1157Kext*7 0.40 TCGA-FS-A1ZZ-06 12 7635594 7635594 G A CD163 Missense_Mutation p.S1032L 0.41 tolerated(0.41) benign(0.004) TCGA-FS-A1ZZ-06 12 78574770 78574770 G A NAV3 Silent p.R1857R 0.42 TCGA-FS-A1ZZ-06 12 7869615 7869615 G A DPPA3 Nonsense_Mutation p.W141* 0.48 TCGA-FS-A1ZZ-06 12 82070582 82070582 C G PPFIA2 Silent p.G97G 0.52 TCGA-FS-A1ZZ-06 12 8671720 8671720 G A CLEC4D Silent p.G116G 0.47 TCGA-FS-A1ZZ-06 12 89917457 89917457 G A GALNT4 Silent p.P290P 0.45 TCGA-FS-A1ZZ-06 12 9322148 9322148 G A PZP Missense_Mutation p.P627S 0.28 tolerated(0.44) probably_damaging(0.994) TCGA-FS-A1ZZ-06 12 96106999 96106999 C T NTN4 Missense_Mutation p.E328K 0.47 tolerated(0.14) possibly_damaging(0.845) TCGA-FS-A1ZZ-06 12 96292419 96292419 G A CCDC38 Missense_Mutation p.L154F 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 12 97957657 97957657 G A MIR135A2 RNA 0.45 TCGA-FS-A1ZZ-06 12 99145169 99145169 G A ANKS1B Silent p.P1212P 0.51 TCGA-FS-A1ZZ-06 12 99548279 99548279 G A ANKS1B Intron 0.44 TCGA-FS-A1ZZ-06 12 99640632 99640632 G A ANKS1B Silent p.S589S 0.44 TCGA-FS-A1ZZ-06 12 99898347 99898347 C T ANKS1B Missense_Mutation p.E449K 0.64 tolerated(0.09) benign(0.309) TCGA-FS-A1ZZ-06 12 99898353 99898353 G A ANKS1B Missense_Mutation p.P447S 0.33 tolerated(0.78) benign(0.052) TCGA-FS-A1ZZ-06 13 101721152 101721152 C T NALCN Missense_Mutation p.E1409K 0.41 tolerated(0.4) benign(0.003) TCGA-FS-A1ZZ-06 13 102368069 102368069 G A ITGBL1 3'UTR 0.41 TCGA-FS-A1ZZ-06 13 106124924 106124924 G A DAOA Silent p.R57R 0.34 TCGA-FS-A1ZZ-06 13 108862926 108862926 G A LIG4 Missense_Mutation p.P231S 0.51 deleterious(0) benign(0.258) TCGA-FS-A1ZZ-06 13 109672187 109672187 G A MYO16 Missense_Mutation p.M886I 0.35 tolerated(0.51) benign(0.004) TCGA-FS-A1ZZ-06 13 109707898 109707898 G A MYO16 Missense_Mutation p.R1075Q 0.50 tolerated(0.08) probably_damaging(0.991) TCGA-FS-A1ZZ-06 13 110850904 110850904 G A COL4A1 Missense_Mutation p.P399S 0.49 unknown(0) TCGA-FS-A1ZZ-06 13 111277558 111277558 T C CARKD Missense_Mutation p.F107L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZZ-06 13 111768020 111768020 C T ARHGEF7 Silent p.L49L 0.43 TCGA-FS-A1ZZ-06 13 20000566 20000566 G A TPTE2 Missense_Mutation p.S465L 0.13 tolerated(0.11) benign(0.11) TCGA-FS-A1ZZ-06 13 20222625 20222625 G A MPHOSPH8 Missense_Mutation p.E428K 0.62 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-FS-A1ZZ-06 13 20797386 20797386 G A GJB6 Silent p.A78A 0.42 TCGA-FS-A1ZZ-06 13 21295856 21295856 C T IL17D Silent p.F124F 0.37 TCGA-FS-A1ZZ-06 13 22275471 22275471 G A FGF9 Missense_Mutation p.G175E 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 13 23907395 23907395 G A SACS Silent p.F3540F 0.54 TCGA-FS-A1ZZ-06 13 24433009 24433009 G A MIPEP Missense_Mutation p.R366C 0.46 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZZ-06 13 28539094 28539094 C T CDX2 Silent p.E200E 0.29 TCGA-FS-A1ZZ-06 13 28589385 28589385 G A FLT3 Missense_Mutation p.P888S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 13 28636006 28636006 G C FLT3 Missense_Mutation p.N122K 0.39 tolerated(0.12) benign(0.01) TCGA-FS-A1ZZ-06 13 29933550 29933550 G A MTUS2 Silent p.L1029L 0.53 TCGA-FS-A1ZZ-06 13 31850896 31850896 C T B3GALTL Missense_Mutation p.H280Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 13 32366148 32366148 G A RXFP2 Missense_Mutation p.A451T 0.46 tolerated(0.48) benign(0.044) TCGA-FS-A1ZZ-06 13 32376410 32376410 G A RXFP2 Silent p.R711R 0.44 TCGA-FS-A1ZZ-06 13 32527548 32527548 A G EEF1DP3 RNA 0.44 TCGA-FS-A1ZZ-06 13 36379876 36379876 C T DCLK1 Missense_Mutation p.R635Q 0.45 deleterious(0) benign(0.417) TCGA-FS-A1ZZ-06 13 41134661 41134661 T C FOXO1 Missense_Mutation p.T323A 0.54 deleterious(0) possibly_damaging(0.69) TCGA-FS-A1ZZ-06 13 41766769 41766769 C T KBTBD7 Missense_Mutation p.G542E 0.47 deleterious(0.01) possibly_damaging(0.78) TCGA-FS-A1ZZ-06 13 42179322 42179322 G A VWA8 Silent p.I1656I 0.50 TCGA-FS-A1ZZ-06 13 51936189 51936189 G A SERPINE3 3'UTR 0.38 TCGA-FS-A1ZZ-06 13 52854826 52854826 C T RP11-248G5.8 RNA 0.22 TCGA-FS-A1ZZ-06 13 72255972 72255972 G A DACH1 Missense_Mutation p.H309Y 0.46 probably_damaging(0.989) TCGA-FS-A1ZZ-06 13 75863085 75863085 G A TBC1D4 Silent p.L1216L 0.45 TCGA-FS-A1ZZ-06 13 77642739 77642739 G A MYCBP2 Silent p.F4006F 0.44 TCGA-FS-A1ZZ-06 13 77642939 77642939 G A MYCBP2 Missense_Mutation p.R3940C 0.49 probably_damaging(0.992) TCGA-FS-A1ZZ-06 13 79189831 79189831 G A RNF219 Missense_Mutation p.P689S 0.47 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FS-A1ZZ-06 13 86368512 86368512 C T SLITRK6 Missense_Mutation p.G711E 0.47 tolerated(0.67) benign(0.002) TCGA-FS-A1ZZ-06 13 86369238 86369238 T C SLITRK6 Missense_Mutation p.N469S 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 13 96205164 96205164 T G CLDN10 Missense_Mutation p.C53G 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 13 96553067 96553067 A G UGGT2 Silent p.N876N 0.41 TCGA-FS-A1ZZ-06 13 98671974 98671974 C T IPO5 Silent p.V1010V 0.39 TCGA-FS-A1ZZ-06 13 99037972 99037972 G A FARP1 Silent p.R221R 0.48 TCGA-FS-A1ZZ-06 14 100364580 100364580 C T EML1 Missense_Mutation p.H299Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 14 100615377 100615377 C T DEGS2 Nonsense_Mutation p.W251* 0.49 TCGA-FS-A1ZZ-06 14 100795310 100795310 C T SLC25A47 Missense_Mutation p.S192F 0.49 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 14 100795311 100795311 C T SLC25A47 Silent p.S192S 0.49 TCGA-FS-A1ZZ-06 14 100995455 100995455 C T WDR25 Silent p.F441F 0.39 TCGA-FS-A1ZZ-06 14 101512859 101512859 C T MIR487B RNA 0.40 TCGA-FS-A1ZZ-06 14 101521023 101521023 C T MIR134 RNA 0.45 TCGA-FS-A1ZZ-06 14 101526930 101526930 G A MIR496 RNA 0.32 TCGA-FS-A1ZZ-06 14 102452703 102452703 C T DYNC1H1 Missense_Mutation p.S714L 0.60 possibly_damaging(0.794) TCGA-FS-A1ZZ-06 14 103918266 103918266 G A MARK3 Missense_Mutation p.E120K 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 14 105415687 105415687 G A AHNAK2 Missense_Mutation p.T2034I 0.62 possibly_damaging(0.905) TCGA-FS-A1ZZ-06 14 106092377 106092377 G A IGHG4 Silent p.F9F 0.39 TCGA-FS-A1ZZ-06 14 106236259 106236259 C T IGHG3 Missense_Mutation p.M182I 0.42 tolerated(0.14) benign(0.244) TCGA-FS-A1ZZ-06 14 106321778 106321778 C T IGHM Silent p.G152G 0.39 TCGA-FS-A1ZZ-06 14 106321789 106321789 G A IGHM Silent p.L149L 0.43 TCGA-FS-A1ZZ-06 14 106494244 106494244 G A IGHV2-5 Missense_Mutation p.S83F 0.39 deleterious(0.01) possibly_damaging(0.893) TCGA-FS-A1ZZ-06 14 106733361 106733361 C T IGHV1-24 Missense_Mutation p.G45E 0.43 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 14 106926618 106926618 G A IGHV3-43 Silent p.F9F 0.32 TCGA-FS-A1ZZ-06 14 19377893 19377893 C T OR11H12 Silent p.F100F 0.20 TCGA-FS-A1ZZ-06 14 19553590 19553590 G A POTEG Silent p.R58R 0.13 TCGA-FS-A1ZZ-06 14 19553872 19553872 C T POTEG Silent p.V152V 0.12 TCGA-FS-A1ZZ-06 14 19573107 19573107 C T POTEG Missense_Mutation p.S402F 0.09 deleterious(0) probably_damaging(0.943) TCGA-FS-A1ZZ-06 14 19573109 19573109 C T POTEG Nonsense_Mutation p.Q403* 0.09 TCGA-FS-A1ZZ-06 14 19671088 19671088 T G BMS1P17 RNA 0.17 TCGA-FS-A1ZZ-06 14 20215761 20215761 C T OR4Q3 Missense_Mutation p.P59S 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZZ-06 14 20216380 20216380 G A OR4Q3 Missense_Mutation p.S265N 0.29 tolerated(0.28) possibly_damaging(0.727) TCGA-FS-A1ZZ-06 14 20388892 20388892 C T OR4K5 Missense_Mutation p.L43F 0.29 tolerated(0.18) benign(0.008) TCGA-FS-A1ZZ-06 14 20611898 20611898 G A OR4N5 Missense_Mutation p.E2K 0.48 tolerated(0.17) benign(0.005) TCGA-FS-A1ZZ-06 14 20665809 20665809 C T OR11G2 Silent p.S105S 0.57 TCGA-FS-A1ZZ-06 14 21526300 21526300 G T RNASE8 Missense_Mutation p.Q83H 0.35 tolerated(0.07) benign(0.194) TCGA-FS-A1ZZ-06 14 22038829 22038829 C T OR10G3 Missense_Mutation p.G16E 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 14 22102815 22102815 G A OR10G2 Missense_Mutation p.R62C 0.61 deleterious(0) possibly_damaging(0.847) TCGA-FS-A1ZZ-06 14 22205179 22205179 C T TRAV4 Silent p.I81I 0.54 TCGA-FS-A1ZZ-06 14 22309866 22309866 G A TRAV12-1 Missense_Mutation p.A83T 0.42 deleterious(0.02) benign(0.234) TCGA-FS-A1ZZ-06 14 22320734 22320734 C T TRAV8-3 5'Flank 0.31 TCGA-FS-A1ZZ-06 14 22362919 22362919 G A TRAV8-4 Missense_Mutation p.G17E 0.35 tolerated(0.16) benign(0.082) TCGA-FS-A1ZZ-06 14 22433729 22433729 G A TRAV12-3 5'UTR 0.35 TCGA-FS-A1ZZ-06 14 23313662 23313662 C G MMP14 Missense_Mutation p.P365R 0.43 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 14 23634518 23634518 G A SLC7A8 Missense_Mutation p.R162W 0.34 deleterious(0) benign(0.037) TCGA-FS-A1ZZ-06 14 23870036 23870036 G T MYH6 Missense_Mutation p.A431E 0.42 deleterious(0) possibly_damaging(0.767) TCGA-FS-A1ZZ-06 14 23881960 23881960 G A MYH7 3'UTR 0.50 TCGA-FS-A1ZZ-06 14 24620500 24620500 C T RNF31 Missense_Mutation p.S550F 0.49 deleterious(0) possibly_damaging(0.646) TCGA-FS-A1ZZ-06 14 31762523 31762523 G A RP11-596D21.1 Intron 0.47 TCGA-FS-A1ZZ-06 14 32560773 32560773 C T ARHGAP5 Missense_Mutation p.H300Y 0.35 tolerated(1) benign(0.216) TCGA-FS-A1ZZ-06 14 42356124 42356124 G A LRFN5 Missense_Mutation p.R99Q 0.55 tolerated(0.13) possibly_damaging(0.473) TCGA-FS-A1ZZ-06 14 44974330 44974330 C T FSCB Missense_Mutation p.E621K 0.50 tolerated(0.09) unknown(0) TCGA-FS-A1ZZ-06 14 45633577 45633577 C T FANCM Missense_Mutation p.R533C 0.45 deleterious(0) probably_damaging(0.929) TCGA-FS-A1ZZ-06 14 47311177 47311177 A T MDGA2 Missense_Mutation p.F1012Y 0.34 tolerated_low_confidence(0.32) benign(0.001) TCGA-FS-A1ZZ-06 14 47530677 47530677 G A MDGA2 Missense_Mutation p.P434S 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 14 50789412 50789412 C T ATP5S Silent p.I112I 0.33 TCGA-FS-A1ZZ-06 14 55529629 55529629 C T MAPK1IP1L Silent p.A104A 0.45 TCGA-FS-A1ZZ-06 14 57268564 57268564 G A OTX2 Silent p.T261T 0.47 TCGA-FS-A1ZZ-06 14 61789268 61789268 C T PRKCH Intron 0.56 TCGA-FS-A1ZZ-06 14 64636996 64636996 C T SYNE2 Missense_Mutation p.A5684V 0.41 benign(0.226) TCGA-FS-A1ZZ-06 14 65209875 65209875 C T PLEKHG3 Silent p.P982P 0.42 TCGA-FS-A1ZZ-06 14 65230483 65230483 G A SPTB Intron 0.48 TCGA-FS-A1ZZ-06 14 70459159 70459159 G A SMOC1 Silent p.T184T 0.42 TCGA-FS-A1ZZ-06 14 70713174 70713174 C T ADAM21P1 RNA 0.49 TCGA-FS-A1ZZ-06 14 73198523 73198523 C T DPF3 Missense_Mutation p.E141K 0.71 tolerated(0.06) benign(0.08) TCGA-FS-A1ZZ-06 14 74707911 74707911 C T VSX2 Nonsense_Mutation p.R133* 0.41 TCGA-FS-A1ZZ-06 14 74825517 74825517 C T VRTN Silent p.L677L 0.44 TCGA-FS-A1ZZ-06 14 74975335 74975335 G A LTBP2 Silent p.V1208V 0.34 TCGA-FS-A1ZZ-06 14 77255563 77255563 G A ANGEL1 3'UTR 0.58 TCGA-FS-A1ZZ-06 14 77935417 77935417 C T AHSA1 Intron 0.52 TCGA-FS-A1ZZ-06 14 81422135 81422135 C T TSHR Silent p.F37F 0.51 TCGA-FS-A1ZZ-06 14 86088753 86088753 C T FLRT2 Missense_Mutation p.L299F 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZZ-06 14 86088939 86088939 C T FLRT2 Missense_Mutation p.P361S 0.54 tolerated(0.18) benign(0.017) TCGA-FS-A1ZZ-06 14 92076898 92076898 A C CATSPERB Missense_Mutation p.F842V 0.36 tolerated(0.57) benign(0.001) TCGA-FS-A1ZZ-06 14 92403312 92403312 C T FBLN5 Missense_Mutation p.D120N 0.49 tolerated(0.38) benign(0.058) TCGA-FS-A1ZZ-06 14 94007029 94007029 A G UNC79 Missense_Mutation p.H282R 0.50 tolerated(0.25) probably_damaging(0.945) TCGA-FS-A1ZZ-06 14 94048633 94048633 C T UNC79 Missense_Mutation p.P739S 0.28 tolerated_low_confidence(0.42) benign(0.004) TCGA-FS-A1ZZ-06 14 94053106 94053106 G A UNC79 Missense_Mutation p.E785K 0.40 deleterious(0.05) benign(0.084) TCGA-FS-A1ZZ-06 14 94708700 94708700 C T PPP4R4 Silent p.D407D 0.50 TCGA-FS-A1ZZ-06 14 94752588 94752588 C T SERPINA10 Missense_Mutation p.E334K 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1ZZ-06 14 94912826 94912826 G A SERPINA11 Silent p.F253F 0.50 TCGA-FS-A1ZZ-06 14 94914515 94914515 G A SERPINA11 Silent p.F199F 0.47 TCGA-FS-A1ZZ-06 14 95033575 95033575 G A SERPINA4 Silent p.R306R 0.41 TCGA-FS-A1ZZ-06 14 95080886 95080886 G A SERPINA3 Silent p.Q36Q 0.36 TCGA-FS-A1ZZ-06 14 96706660 96706660 C T BDKRB2 Intron 0.48 TCGA-FS-A1ZZ-06 14 96953373 96953373 G A AK7 Missense_Mutation p.E705K 0.50 deleterious(0.02) benign(0.311) TCGA-FS-A1ZZ-06 15 20658730 20658730 C T HERC2P3 RNA 0.24 TCGA-FS-A1ZZ-06 15 20663149 20663149 G A HERC2P3 RNA 0.33 TCGA-FS-A1ZZ-06 15 22369074 22369074 C T OR4M2 Missense_Mutation p.P167S 0.36 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 15 24923385 24923385 G A NPAP1 Missense_Mutation p.D791N 0.47 tolerated_low_confidence(0.59) benign(0.068) TCGA-FS-A1ZZ-06 15 25336855 25336855 T G SNORD116-23 5'Flank 0.48 TCGA-FS-A1ZZ-06 15 32450759 32450759 C T CHRNA7 Silent p.L278L 0.31 TCGA-FS-A1ZZ-06 15 33822854 33822854 C T RYR3 Missense_Mutation p.S114F 0.38 probably_damaging(1) TCGA-FS-A1ZZ-06 15 33925186 33925186 G A RYR3 Silent p.L968L 0.47 TCGA-FS-A1ZZ-06 15 34536215 34536215 G A SLC12A6 Nonsense_Mutation p.R668* 0.51 TCGA-FS-A1ZZ-06 15 35185944 35185944 C T AQR Missense_Mutation p.D831N 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-FS-A1ZZ-06 15 37110049 37110049 C T CSNK1A1P1 RNA 0.39 TCGA-FS-A1ZZ-06 15 39882038 39882038 G A THBS1 Silent p.G653G 0.38 TCGA-FS-A1ZZ-06 15 41192240 41192240 C T VPS18 Silent p.F408F 0.50 TCGA-FS-A1ZZ-06 15 42858950 42858950 A G HAUS2 Missense_Mutation p.D215G 0.48 deleterious_low_confidence(0.04) probably_damaging(0.946) TCGA-FS-A1ZZ-06 15 44116846 44116846 A G MFAP1 5'UTR 0.40 TCGA-FS-A1ZZ-06 15 45387155 45387155 G A DUOX2 Silent p.F1458F 0.44 TCGA-FS-A1ZZ-06 15 45408347 45408347 C T DUOXA2 Silent p.F77F 0.49 TCGA-FS-A1ZZ-06 15 45433598 45433598 C T DUOX1 Silent p.V558V 0.32 TCGA-FS-A1ZZ-06 15 45554216 45554216 G A SLC28A2 Silent p.R58R 0.36 TCGA-FS-A1ZZ-06 15 45554282 45554282 C T SLC28A2 Silent p.I80I 0.39 TCGA-FS-A1ZZ-06 15 45559899 45559899 G A SLC28A2 Missense_Mutation p.M368I 0.45 deleterious(0.02) possibly_damaging(0.755) TCGA-FS-A1ZZ-06 15 45656084 45656084 T C GATM Intron 0.40 TCGA-FS-A1ZZ-06 15 49118127 49118127 G A SHC4 3'UTR 0.45 TCGA-FS-A1ZZ-06 15 49254922 49254922 G A SHC4 Silent p.N97N 0.43 TCGA-FS-A1ZZ-06 15 49716456 49716456 C T FGF7 5'UTR 0.46 TCGA-FS-A1ZZ-06 15 51791142 51791142 G A DMXL2 Missense_Mutation p.P1427S 0.48 tolerated(0.05) probably_damaging(0.999) TCGA-FS-A1ZZ-06 15 54586243 54586243 G A UNC13C Missense_Mutation p.M1323I 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.813) TCGA-FS-A1ZZ-06 15 57839758 57839758 G A CGNL1 3'UTR 0.37 TCGA-FS-A1ZZ-06 15 58306061 58306061 G A ALDH1A2 Missense_Mutation p.L120F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZZ-06 15 58855711 58855711 G A LIPC Missense_Mutation p.G393R 0.45 tolerated(0.31) benign(0.073) TCGA-FS-A1ZZ-06 15 64506176 64506176 C T CSNK1G1 Missense_Mutation p.E198K 0.46 tolerated(0.36) probably_damaging(0.993) TCGA-FS-A1ZZ-06 15 65772729 65772729 G A DPP8 Missense_Mutation p.S392F 0.33 deleterious(0) possibly_damaging(0.73) TCGA-FS-A1ZZ-06 15 68040913 68040913 C T MAP2K5 Nonsense_Mutation p.Q370* 0.42 TCGA-FS-A1ZZ-06 15 68125544 68125544 G A SKOR1 Missense_Mutation p.E821K 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.502) TCGA-FS-A1ZZ-06 15 68125554 68125554 A C SKOR1 Missense_Mutation p.Q824P 0.37 deleterious_low_confidence(0) benign(0.293) TCGA-FS-A1ZZ-06 15 69652437 69652437 C T PAQR5 Silent p.L6L 0.42 TCGA-FS-A1ZZ-06 15 69652438 69652438 C T PAQR5 Missense_Mutation p.P7S 0.42 deleterious(0) benign(0.356) TCGA-FS-A1ZZ-06 15 72456035 72456035 G A GRAMD2 Missense_Mutation p.P222S 0.41 tolerated(0.13) benign(0.117) TCGA-FS-A1ZZ-06 15 73635981 73635981 G A HCN4 Silent p.I318I 0.47 TCGA-FS-A1ZZ-06 15 74741678 74741678 G A UBL7 Missense_Mutation p.P244L 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-FS-A1ZZ-06 15 75977730 75977730 G A CSPG4 Missense_Mutation p.P1368S 0.38 tolerated(0.2) benign(0.006) TCGA-FS-A1ZZ-06 15 77425774 77425774 G A PEAK1 Missense_Mutation p.S1217F 0.46 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 15 77763375 77763375 C T HMG20A Missense_Mutation p.H192Y 0.52 deleterious(0.03) benign(0.002) TCGA-FS-A1ZZ-06 15 78219158 78219158 G A RP11-114H24.7 3'Flank 0.23 TCGA-FS-A1ZZ-06 15 78322493 78322493 G A TBC1D2B Missense_Mutation p.R235C 0.50 tolerated(0.16) probably_damaging(0.999) TCGA-FS-A1ZZ-06 15 78837985 78837985 C T PSMA4 Missense_Mutation p.P129L 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 15 78837986 78837986 C T PSMA4 Silent p.P129P 0.35 TCGA-FS-A1ZZ-06 15 78873233 78873233 C T CHRNA5 Missense_Mutation p.R63C 0.51 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 15 81654585 81654585 C T TMC3 Missense_Mutation p.E124K 0.54 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZZ-06 15 83933330 83933330 C T BNC1 Missense_Mutation p.G225R 0.42 tolerated(0.61) possibly_damaging(0.736) TCGA-FS-A1ZZ-06 15 85383851 85383851 G A ALPK3 Silent p.K649K 0.48 TCGA-FS-A1ZZ-06 15 89388938 89388938 C T ACAN Silent p.F418F 0.42 TCGA-FS-A1ZZ-06 15 90785030 90785030 C G GDPGP1 Missense_Mutation p.P297R 0.41 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZZ-06 15 92706011 92706011 C T SLCO3A1 Silent p.F593F 0.55 TCGA-FS-A1ZZ-06 15 93609321 93609321 G A RGMA Intron 0.50 TCGA-FS-A1ZZ-06 15 94910902 94910902 G C MCTP2 Missense_Mutation p.C457S 0.09 tolerated(0.31) benign(0) TCGA-FS-A1ZZ-06 15 98995172 98995172 C T FAM169B Silent p.R84R 0.42 TCGA-FS-A1ZZ-06 16 10729726 10729726 C T TEKT5 Missense_Mutation p.R379K 0.45 tolerated(1) benign(0.011) TCGA-FS-A1ZZ-06 16 1391445 1391445 T G BAIAP3 Missense_Mutation p.V264G 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 16 15204599 15204599 G A RP11-1186N24.5 RNA 0.67 TCGA-FS-A1ZZ-06 16 1573573 1573573 G A IFT140 Silent p.F1133F 0.54 TCGA-FS-A1ZZ-06 16 19468246 19468246 C T TMC5 Intron 0.41 TCGA-FS-A1ZZ-06 16 19548169 19548169 C T CCP110 Missense_Mutation p.P393L 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 16 20360449 20360449 G A UMOD Silent p.G58G 0.44 TCGA-FS-A1ZZ-06 16 2161784 2161784 G A PKD1 Silent p.S1128S 0.40 TCGA-FS-A1ZZ-06 16 2258787 2258787 G A MLST8 Nonsense_Mutation p.W297* 0.49 TCGA-FS-A1ZZ-06 16 2258788 2258788 G A MLST8 Nonsense_Mutation p.W297* 0.48 TCGA-FS-A1ZZ-06 16 24268006 24268006 G A CACNG3 5'UTR 0.54 TCGA-FS-A1ZZ-06 16 24801035 24801035 C T TNRC6A Missense_Mutation p.P358S 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A1ZZ-06 16 2732687 2732687 C T KCTD5 Silent p.V46V 0.44 TCGA-FS-A1ZZ-06 16 30515547 30515547 C T ITGAL Missense_Mutation p.L733F 0.34 deleterious(0) possibly_damaging(0.822) TCGA-FS-A1ZZ-06 16 30536828 30536828 G A ZNF768 Silent p.P211P 0.36 TCGA-FS-A1ZZ-06 16 30536829 30536829 G A ZNF768 Missense_Mutation p.P211L 0.36 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-FS-A1ZZ-06 16 30736020 30736020 C T SRCAP Missense_Mutation p.P1759S 0.49 benign(0.078) TCGA-FS-A1ZZ-06 16 3077227 3077227 C T THOC6 Silent p.T252T 0.40 TCGA-FS-A1ZZ-06 16 3079381 3079381 G A CCDC64B Missense_Mutation p.P336L 0.27 tolerated(0.28) benign(0.009) TCGA-FS-A1ZZ-06 16 30976205 30976205 C T SETD1A Missense_Mutation p.S381F 0.39 possibly_damaging(0.831) TCGA-FS-A1ZZ-06 16 3117463 3117463 C T IL32 Intron 0.45 TCGA-FS-A1ZZ-06 16 31374287 31374287 C T ITGAX Missense_Mutation p.S464F 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 16 31391891 31391891 C T ITGAX Silent p.F1074F 0.51 TCGA-FS-A1ZZ-06 16 3406010 3406010 G A OR2C1 Missense_Mutation p.E24K 0.52 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZZ-06 16 34624268 34624268 C T RP11-488I20.3 RNA 0.40 TCGA-FS-A1ZZ-06 16 3602201 3602201 C T NLRC3 Silent p.E828E 0.35 TCGA-FS-A1ZZ-06 16 3639402 3639402 G A SLX4 Missense_Mutation p.P1413S 0.43 tolerated(0.15) probably_damaging(0.998) TCGA-FS-A1ZZ-06 16 3640116 3640116 G A SLX4 Missense_Mutation p.P1175S 0.39 tolerated(0.49) benign(0.047) TCGA-FS-A1ZZ-06 16 3652243 3652243 A G SLX4 Missense_Mutation p.F276L 0.44 tolerated(0.58) benign(0.061) TCGA-FS-A1ZZ-06 16 4164547 4164547 G A ADCY9 Silent p.F299F 0.58 TCGA-FS-A1ZZ-06 16 4253226 4253226 G A SRL Missense_Mutation p.S67F 0.40 deleterious(0) possibly_damaging(0.739) TCGA-FS-A1ZZ-06 16 46991110 46991110 G A DNAJA2 Missense_Mutation p.S357F 0.49 deleterious(0) benign(0.163) TCGA-FS-A1ZZ-06 16 48167670 48167670 G A ABCC12 Silent p.I352I 0.33 TCGA-FS-A1ZZ-06 16 49669970 49669970 G A ZNF423 Silent p.S1031S 0.35 TCGA-FS-A1ZZ-06 16 49672585 49672585 G A ZNF423 Missense_Mutation p.H160Y 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 16 5053432 5053432 G A SEC14L5 Missense_Mutation p.G387E 0.47 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 16 51171368 51171368 G A SALL1 Silent p.P1210P 0.50 TCGA-FS-A1ZZ-06 16 51172696 51172696 G A SALL1 Missense_Mutation p.S1146L 0.43 deleterious(0) possibly_damaging(0.57) TCGA-FS-A1ZZ-06 16 56423199 56423199 C T AMFR Missense_Mutation p.E392K 0.41 tolerated(0.37) benign(0.065) TCGA-FS-A1ZZ-06 16 56423200 56423200 C T AMFR Silent p.R391R 0.41 TCGA-FS-A1ZZ-06 16 56485055 56485055 G A NUDT21 Silent p.F20F 0.44 TCGA-FS-A1ZZ-06 16 56669797 56669797 C T MT1M 3'Flank 0.50 TCGA-FS-A1ZZ-06 16 57755588 57755588 G A CCDC135 Missense_Mutation p.D406N 0.42 tolerated(0.34) benign(0.03) TCGA-FS-A1ZZ-06 16 58314339 58314339 C T PRSS54 Missense_Mutation p.G326E 0.37 tolerated(0.8) benign(0) TCGA-FS-A1ZZ-06 16 66956003 66956003 G A RRAD Silent p.S301S 0.45 TCGA-FS-A1ZZ-06 16 66956004 66956004 G A RRAD Missense_Mutation p.S301F 0.45 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 16 67289375 67289375 G A SLC9A5 Splice_Site p.X245_splice 0.49 TCGA-FS-A1ZZ-06 16 67327786 67327786 G A KCTD19 Missense_Mutation p.P627S 0.50 tolerated_low_confidence(0.09) possibly_damaging(0.718) TCGA-FS-A1ZZ-06 16 67327805 67327805 C T KCTD19 Silent p.Q620Q 0.37 TCGA-FS-A1ZZ-06 16 67470517 67470517 G A HSD11B2 Missense_Mutation p.E277K 0.47 tolerated(0.12) benign(0.298) TCGA-FS-A1ZZ-06 16 68011631 68011631 C T DPEP3 Silent p.V311V 0.55 TCGA-FS-A1ZZ-06 16 70820255 70820255 A G VAC14 Missense_Mutation p.F40L 0.43 tolerated(0.07) benign(0.038) TCGA-FS-A1ZZ-06 16 70923520 70923520 C T HYDIN Silent p.T3248T 0.25 TCGA-FS-A1ZZ-06 16 71163558 71163558 G A HYDIN Silent p.F404F 0.26 TCGA-FS-A1ZZ-06 16 72170606 72170606 C T PMFBP1 Missense_Mutation p.R344K 0.68 tolerated(1) benign(0) TCGA-FS-A1ZZ-06 16 74419270 74419270 C T NPIPB15 Nonsense_Mutation p.R94* 0.12 TCGA-FS-A1ZZ-06 16 74729212 74729212 G A MLKL Silent p.F148F 0.44 TCGA-FS-A1ZZ-06 16 7568146 7568146 C T RBFOX1 Intron 0.45 TCGA-FS-A1ZZ-06 16 81180978 81180978 C T PKD1L2 RNA 0.55 TCGA-FS-A1ZZ-06 16 81279168 81279168 C T BCMO1 Silent p.F51F 0.46 TCGA-FS-A1ZZ-06 16 83251023 83251023 G A CDH13 Missense_Mutation p.G233E 0.42 tolerated(0.36) probably_damaging(1) TCGA-FS-A1ZZ-06 16 84229435 84229435 C T ADAD2 Missense_Mutation p.S438L 0.55 tolerated(0.21) benign(0.04) TCGA-FS-A1ZZ-06 16 84230263 84230263 G A ADAD2 Missense_Mutation p.G595R 0.45 deleterious(0.02) possibly_damaging(0.464) TCGA-FS-A1ZZ-06 16 85024132 85024132 G A ZDHHC7 Silent p.S31S 0.56 TCGA-FS-A1ZZ-06 16 85704609 85704609 C T GSE1 Silent p.L1142L 0.46 TCGA-FS-A1ZZ-06 16 85954808 85954808 C T IRF8 Nonsense_Mutation p.Q401* 0.51 TCGA-FS-A1ZZ-06 16 8996278 8996278 C T USP7 Missense_Mutation p.R634Q 0.42 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 17 10212982 10212982 C T MYH13 Missense_Mutation p.E1608K 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A1ZZ-06 17 10301804 10301804 C T MYH8 Missense_Mutation p.E1379K 0.35 deleterious(0) benign(0.333) TCGA-FS-A1ZZ-06 17 10307703 10307703 C T MYH8 Missense_Mutation p.E878K 0.37 deleterious(0) benign(0.371) TCGA-FS-A1ZZ-06 17 10348156 10348156 C T MYH4 Missense_Mutation p.G1843S 0.41 tolerated(0.06) benign(0.037) TCGA-FS-A1ZZ-06 17 10348605 10348605 G A MYH4 Silent p.I1748I 0.49 TCGA-FS-A1ZZ-06 17 10401113 10401113 C T MYH1 Missense_Mutation p.D1435N 0.46 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZZ-06 17 10431131 10431131 C T MYH2 Missense_Mutation p.E1269K 0.45 tolerated(0.29) benign(0.102) TCGA-FS-A1ZZ-06 17 10432094 10432094 C T MYH2 Silent p.V1219V 0.49 TCGA-FS-A1ZZ-06 17 11608399 11608399 G A DNAH9 Missense_Mutation p.E1817K 0.46 benign(0.005) TCGA-FS-A1ZZ-06 17 11659961 11659961 G A DNAH9 Missense_Mutation p.R2272H 0.52 benign(0.052) TCGA-FS-A1ZZ-06 17 11671865 11671865 C T DNAH9 Silent p.I2422I 0.40 TCGA-FS-A1ZZ-06 17 11784661 11784661 G A DNAH9 Silent p.R3579R 0.56 TCGA-FS-A1ZZ-06 17 12908385 12908385 G A ELAC2 Missense_Mutation p.P302S 0.44 deleterious(0.01) probably_damaging(0.978) TCGA-FS-A1ZZ-06 17 13399989 13399989 G A HS3ST3A1 Missense_Mutation p.A249V 0.14 deleterious(0.03) benign(0.239) TCGA-FS-A1ZZ-06 17 14683469 14683469 T G AC005863.1 RNA 0.48 TCGA-FS-A1ZZ-06 17 16365616 16365616 C T FAM211A Missense_Mutation p.D111N 0.52 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 17 16526300 16526300 G A ZNF624 Missense_Mutation p.H634Y 0.39 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZZ-06 17 18707560 18707560 G A TVP23B Missense_Mutation p.G191E 0.41 tolerated(0.1) benign(0.159) TCGA-FS-A1ZZ-06 17 19641530 19641530 C T ALDH3A1 3'UTR 0.50 TCGA-FS-A1ZZ-06 17 2280013 2280013 C T SGSM2 Intron 0.39 TCGA-FS-A1ZZ-06 17 25974345 25974345 C T LGALS9 Missense_Mutation p.P270S 0.30 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZZ-06 17 26958672 26958672 G A KIAA0100 Missense_Mutation p.S1375F 0.49 deleterious(0) possibly_damaging(0.849) TCGA-FS-A1ZZ-06 17 2868886 2868886 C T RAP1GAP2 Missense_Mutation p.S182F 0.57 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZZ-06 17 29170935 29170935 C T ATAD5 Missense_Mutation p.S749F 0.58 deleterious(0) possibly_damaging(0.894) TCGA-FS-A1ZZ-06 17 2923809 2923809 G A RAP1GAP2 Silent p.R557R 0.70 TCGA-FS-A1ZZ-06 17 29553501 29553501 C T NF1 Nonsense_Mutation p.Q684* 0.40 TCGA-FS-A1ZZ-06 17 29592318 29592318 C T NF1 Missense_Mutation p.S1599F 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 17 29849020 29849020 C T RAB11FIP4 Silent p.N282N 0.44 TCGA-FS-A1ZZ-06 17 2996105 2996105 G A OR1D2 Silent p.F62F 0.36 TCGA-FS-A1ZZ-06 17 3030148 3030148 C T OR1G1 Missense_Mutation p.G233E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 17 30533929 30533929 T C RHOT1 Silent p.L473L 0.45 TCGA-FS-A1ZZ-06 17 31415911 31415911 G A ASIC2 Silent p.F319F 0.54 TCGA-FS-A1ZZ-06 17 32483453 32483453 G A ASIC2 Silent p.F33F 0.55 TCGA-FS-A1ZZ-06 17 33482367 33482367 C T UNC45B Missense_Mutation p.A231V 0.56 deleterious(0.03) benign(0.082) TCGA-FS-A1ZZ-06 17 33482368 33482368 C T UNC45B Silent p.A231A 0.55 TCGA-FS-A1ZZ-06 17 33802058 33802058 C T SLFN12L Missense_Mutation p.D551N 0.68 tolerated(0.52) benign(0.328) TCGA-FS-A1ZZ-06 17 33802148 33802148 G C SLFN12L Missense_Mutation p.P521A 0.43 deleterious(0.04) benign(0.225) TCGA-FS-A1ZZ-06 17 36873715 36873715 C T MLLT6 Missense_Mutation p.S561F 0.36 deleterious(0) unknown(0) TCGA-FS-A1ZZ-06 17 36896663 36896663 G A PCGF2 5'UTR 0.50 TCGA-FS-A1ZZ-06 17 37093532 37093532 C T FBXO47 Missense_Mutation p.E419K 0.45 tolerated(0.08) benign(0.093) TCGA-FS-A1ZZ-06 17 37580986 37580986 G A MED1 Nonsense_Mutation p.R249* 0.43 TCGA-FS-A1ZZ-06 17 37840880 37840880 G A PGAP3 Silent p.P134P 0.62 TCGA-FS-A1ZZ-06 17 37865597 37865597 C T ERBB2 Nonsense_Mutation p.Q156* 0.38 TCGA-FS-A1ZZ-06 17 38568058 38568058 G A TOP2A Missense_Mutation p.R268C 0.30 deleterious(0.02) probably_damaging(0.931) TCGA-FS-A1ZZ-06 17 38954492 38954492 C T KRT28 Missense_Mutation p.E229K 0.41 tolerated(0.08) benign(0.176) TCGA-FS-A1ZZ-06 17 39190932 39190932 G A KRTAP1-3 Missense_Mutation p.P48S 0.49 tolerated(0.1) unknown(0) TCGA-FS-A1ZZ-06 17 39553606 39553606 G A KRT31 Silent p.F62F 0.42 TCGA-FS-A1ZZ-06 17 39643322 39643322 G A KRT36 Missense_Mutation p.S363F 0.50 deleterious(0) benign(0.378) TCGA-FS-A1ZZ-06 17 39768556 39768556 C T KRT16 Missense_Mutation p.A129T 0.40 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZZ-06 17 40271693 40271693 G A KAT2A Missense_Mutation p.P248L 0.61 deleterious(0.02) possibly_damaging(0.507) TCGA-FS-A1ZZ-06 17 43314976 43314976 C T FMNL1 Silent p.I288I 0.42 TCGA-FS-A1ZZ-06 17 4337383 4337383 C T SPNS3 Missense_Mutation p.P41S 0.55 tolerated(0.48) benign(0.007) TCGA-FS-A1ZZ-06 17 45994184 45994184 G A SP2 Silent p.K249K 0.51 TCGA-FS-A1ZZ-06 17 46109536 46109536 C T COPZ2 Silent p.E158E 0.58 TCGA-FS-A1ZZ-06 17 46257444 46257444 T A SKAP1 Missense_Mutation p.E266D 0.40 tolerated(0.19) benign(0.332) TCGA-FS-A1ZZ-06 17 48551589 48551589 C T ACSF2 Silent p.I586I 0.40 TCGA-FS-A1ZZ-06 17 56291646 56291646 G A MKS1 Silent p.I206I 0.51 TCGA-FS-A1ZZ-06 17 56332262 56332262 G A LPO Missense_Mutation p.R399K 0.39 tolerated(0.4) benign(0.004) TCGA-FS-A1ZZ-06 17 56557472 56557472 C T HSF5 Missense_Mutation p.G236E 0.55 deleterious(0.04) probably_damaging(1) TCGA-FS-A1ZZ-06 17 56676453 56676453 G A TEX14 Silent p.I757I 0.42 TCGA-FS-A1ZZ-06 17 56688526 56688526 C T TEX14 Missense_Mutation p.E400K 0.43 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 17 57288300 57288300 C T SMG8 Silent p.P296P 0.47 TCGA-FS-A1ZZ-06 17 57682819 57682819 G T DHX40 Nonsense_Mutation p.E662* 0.55 TCGA-FS-A1ZZ-06 17 58094806 58094806 G A TBC1D3P1-DHX40P1 RNA 0.47 TCGA-FS-A1ZZ-06 17 58235480 58235480 C T CA4 Missense_Mutation p.P191L 0.54 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A1ZZ-06 17 59067440 59067440 C T BCAS3 Missense_Mutation p.R444C 0.41 deleterious(0) probably_damaging(0.912) TCGA-FS-A1ZZ-06 17 60503709 60503709 C T METTL2A Silent p.I84I 0.33 TCGA-FS-A1ZZ-06 17 61574170 61574170 A G ACE Missense_Mutation p.K1172R 0.33 tolerated(0.1) possibly_damaging(0.718) TCGA-FS-A1ZZ-06 17 62750150 62750150 G A hsa-mir-6080 RNA 0.44 TCGA-FS-A1ZZ-06 17 62851980 62851980 C T LRRC37A3 Missense_Mutation p.E1613K 0.42 tolerated(0.1) benign(0.376) TCGA-FS-A1ZZ-06 17 62892119 62892119 G A LRRC37A3 Silent p.L419L 0.39 TCGA-FS-A1ZZ-06 17 63847922 63847922 C A CEP112 Missense_Mutation p.K798N 0.40 deleterious(0) possibly_damaging(0.804) TCGA-FS-A1ZZ-06 17 6531867 6531867 T A KIAA0753 Missense_Mutation p.R96S 0.34 deleterious(0) benign(0.088) TCGA-FS-A1ZZ-06 17 6683602 6683602 C T FBXO39 Silent p.L139L 0.38 TCGA-FS-A1ZZ-06 17 66902247 66902247 G A ABCA8 Missense_Mutation p.S739F 0.47 deleterious(0) probably_damaging(0.966) TCGA-FS-A1ZZ-06 17 66902293 66902293 C T ABCA8 Missense_Mutation p.D724N 0.44 tolerated(0.08) benign(0.049) TCGA-FS-A1ZZ-06 17 6716195 6716195 C T TEKT1 Silent p.K269K 0.47 TCGA-FS-A1ZZ-06 17 6719154 6719154 G A TEKT1 Missense_Mutation p.R162W 0.59 deleterious(0.02) probably_damaging(0.96) TCGA-FS-A1ZZ-06 17 6902131 6902131 G A ALOX12 Missense_Mutation p.D173N 0.33 deleterious(0.03) benign(0.105) TCGA-FS-A1ZZ-06 17 7080604 7080604 C T ASGR1 Missense_Mutation p.G38R 0.59 tolerated(0.5) probably_damaging(0.973) TCGA-FS-A1ZZ-06 17 71193158 71193158 T G COG1 Missense_Mutation p.L227R 0.37 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZZ-06 17 72249960 72249960 C T TTYH2 Silent p.S504S 0.44 TCGA-FS-A1ZZ-06 17 72308292 72308292 G A DNAI2 Missense_Mutation p.E549K 0.53 deleterious(0.03) benign(0.306) TCGA-FS-A1ZZ-06 17 72356380 72356380 C T BTBD17 Silent p.Q30Q 0.47 TCGA-FS-A1ZZ-06 17 7256709 7256709 G A KCTD11 Missense_Mutation p.E150K 0.40 tolerated(0.88) benign(0.079) TCGA-FS-A1ZZ-06 17 7259169 7259169 C T TMEM95 Missense_Mutation p.A80V 0.36 deleterious(0) possibly_damaging(0.682) TCGA-FS-A1ZZ-06 17 73170892 73170892 G A SUMO2 Silent p.F60F 0.56 TCGA-FS-A1ZZ-06 17 7365821 7365821 G A ZBTB4 Missense_Mutation p.S827F 0.41 possibly_damaging(0.879) TCGA-FS-A1ZZ-06 17 73725384 73725384 C T ITGB4 Missense_Mutation p.S202F 0.46 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZZ-06 17 73727450 73727450 G A ITGB4 Splice_Site p.X405_splice 0.41 TCGA-FS-A1ZZ-06 17 74004689 74004689 C T EVPL Missense_Mutation p.E1533K 0.55 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 17 74075808 74075808 C T ZACN Missense_Mutation p.S83F 0.42 deleterious(0) possibly_damaging(0.832) TCGA-FS-A1ZZ-06 17 76423048 76423048 C T DNAH17 Missense_Mutation p.E4267K 0.36 possibly_damaging(0.63) TCGA-FS-A1ZZ-06 17 76475680 76475680 C T DNAH17 Missense_Mutation p.G2582D 0.41 benign(0.109) TCGA-FS-A1ZZ-06 17 77082359 77082359 C T ENGASE Silent p.V720V 0.34 TCGA-FS-A1ZZ-06 17 78162280 78162280 G C CARD14 Silent p.G260G 0.50 TCGA-FS-A1ZZ-06 17 78201712 78201712 C T SLC26A11 Missense_Mutation p.P230L 0.42 tolerated(0.11) benign(0.053) TCGA-FS-A1ZZ-06 17 78327409 78327409 G A RNF213 Missense_Mutation p.M3507I 0.46 benign(0.071) TCGA-FS-A1ZZ-06 17 78327410 78327410 G A RNF213 Missense_Mutation p.E3508K 0.44 possibly_damaging(0.678) TCGA-FS-A1ZZ-06 17 78811795 78811795 C T RPTOR Missense_Mutation p.R404W 0.43 deleterious(0.01) possibly_damaging(0.735) TCGA-FS-A1ZZ-06 17 79225152 79225152 G A SLC38A10 Intron 0.35 TCGA-FS-A1ZZ-06 17 79234139 79234139 G A SLC38A10 Missense_Mutation p.S396F 0.59 deleterious(0.01) possibly_damaging(0.734) TCGA-FS-A1ZZ-06 17 7948223 7948223 C T ALOX15B Silent p.I251I 0.48 TCGA-FS-A1ZZ-06 17 7984452 7984452 C T ALOX12B Missense_Mutation p.E136K 0.29 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 17 80041436 80041436 G A FASN Silent p.F1766F 0.42 TCGA-FS-A1ZZ-06 17 80046411 80046411 G A FASN Silent p.F816F 0.44 TCGA-FS-A1ZZ-06 17 80320057 80320057 G A TEX19 Missense_Mutation p.E11K 0.43 tolerated(0.92) benign(0.023) TCGA-FS-A1ZZ-06 17 80540786 80540786 C T FOXK2 Missense_Mutation p.T360I 0.29 tolerated(0.07) benign(0.318) TCGA-FS-A1ZZ-06 17 80540787 80540787 C T FOXK2 Silent p.T360T 0.29 TCGA-FS-A1ZZ-06 17 9873045 9873045 G A GAS7 Silent p.H140H 0.45 TCGA-FS-A1ZZ-06 18 10671737 10671737 C T PIEZO2 Silent p.G2682G 0.58 TCGA-FS-A1ZZ-06 18 13825911 13825911 C T MC5R Silent p.I49I 0.47 TCGA-FS-A1ZZ-06 18 20516731 20516731 C T RBBP8 5'UTR 0.56 TCGA-FS-A1ZZ-06 18 20606243 20606243 C T RBBP8 3'UTR 0.36 TCGA-FS-A1ZZ-06 18 22805882 22805882 G A ZNF521 Missense_Mutation p.P667L 0.41 deleterious(0) probably_damaging(0.977) TCGA-FS-A1ZZ-06 18 28648096 28648096 G A DSC2 Missense_Mutation p.S864L 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 18 28983388 28983388 G A DSG4 Missense_Mutation p.G476E 0.50 tolerated(0.1) benign(0.015) TCGA-FS-A1ZZ-06 18 29056114 29056114 G A DSG3 Missense_Mutation p.R964K 0.40 deleterious(0.05) benign(0.037) TCGA-FS-A1ZZ-06 18 30804827 30804827 G A CCDC178 Missense_Mutation p.A577V 0.39 tolerated(0.52) benign(0.046) TCGA-FS-A1ZZ-06 18 3129437 3129437 C T MYOM1 Missense_Mutation p.E863K 0.50 tolerated(0.27) benign(0.035) TCGA-FS-A1ZZ-06 18 31324907 31324907 G A ASXL3 Missense_Mutation p.A1699T 0.47 benign(0.005) TCGA-FS-A1ZZ-06 18 31803000 31803000 C T NOL4 Missense_Mutation p.G73E 0.42 tolerated(0.2) benign(0.307) TCGA-FS-A1ZZ-06 18 32954069 32954069 G A ZNF396 Missense_Mutation p.S63L 0.44 deleterious(0) possibly_damaging(0.765) TCGA-FS-A1ZZ-06 18 44549182 44549182 C T TCEB3CL Missense_Mutation p.D373N 0.15 deleterious(0) probably_damaging(0.948) TCGA-FS-A1ZZ-06 18 44561671 44561671 G A TCEB3B 5'UTR 0.51 TCGA-FS-A1ZZ-06 18 47402197 47402197 C T MYO5B Missense_Mutation p.E1133K 0.50 tolerated(0.12) benign(0.26) TCGA-FS-A1ZZ-06 18 47918471 47918471 C T SKA1 Missense_Mutation p.R208C 0.44 tolerated(0.1) benign(0.028) TCGA-FS-A1ZZ-06 18 48190365 48190365 G A MAPK4 Missense_Mutation p.G13R 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZZ-06 18 48190460 48190460 G A MAPK4 Silent p.R44R 0.43 TCGA-FS-A1ZZ-06 18 50278518 50278518 C T DCC Silent p.S62S 0.48 TCGA-FS-A1ZZ-06 18 50912481 50912481 G A DCC Missense_Mutation p.E810K 0.37 deleterious(0) possibly_damaging(0.648) TCGA-FS-A1ZZ-06 18 51025679 51025679 G A DCC Missense_Mutation p.G1304R 0.54 tolerated(0.45) benign(0.288) TCGA-FS-A1ZZ-06 18 52546659 52546659 G A RAB27B Silent p.Q71Q 0.54 TCGA-FS-A1ZZ-06 18 52555255 52555255 A T RAB27B Missense_Mutation p.N125Y 0.52 deleterious(0) possibly_damaging(0.653) TCGA-FS-A1ZZ-06 18 52608288 52608288 C T CCDC68 Silent p.R48R 0.45 TCGA-FS-A1ZZ-06 18 5291185 5291185 G A ZBTB14 Missense_Mutation p.S341L 0.52 tolerated(0.16) possibly_damaging(0.766) TCGA-FS-A1ZZ-06 18 52937091 52937091 G A TCF4 Missense_Mutation p.P400L 0.48 deleterious(0.05) probably_damaging(0.973) TCGA-FS-A1ZZ-06 18 53018134 53018134 C T TCF4 Missense_Mutation p.R259Q 0.58 deleterious(0) benign(0.031) TCGA-FS-A1ZZ-06 18 56191279 56191279 G A ALPK2 Silent p.S1839S 0.58 TCGA-FS-A1ZZ-06 18 60497326 60497326 C T PHLPP1 Silent p.V545V 0.41 TCGA-FS-A1ZZ-06 18 61471868 61471868 G A SERPINB7 Silent p.%3D 0.46 TCGA-FS-A1ZZ-06 18 61564981 61564982 - A SERPINB2 Frame_Shift_Ins p.Y148Ifs*19 0.33 TCGA-FS-A1ZZ-06 18 61570138 61570138 G A SERPINB2 Missense_Mutation p.E283K 0.33 deleterious(0.01) probably_damaging(0.936) TCGA-FS-A1ZZ-06 18 63481762 63481762 C T CDH7 Missense_Mutation p.P183S 0.43 deleterious(0.04) probably_damaging(0.979) TCGA-FS-A1ZZ-06 18 6889985 6889985 C T ARHGAP28 Silent p.F386F 0.45 TCGA-FS-A1ZZ-06 18 72228156 72228156 G A CNDP1 Silent p.T123T 0.47 TCGA-FS-A1ZZ-06 18 74090987 74090987 G A ZNF516 Missense_Mutation p.A1028V 0.64 tolerated(0.16) benign(0.269) TCGA-FS-A1ZZ-06 18 74617298 74617298 C T ZNF236 Missense_Mutation p.P740S 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 18 74968116 74968116 C T GALR1 Silent p.V223V 0.36 TCGA-FS-A1ZZ-06 18 76752241 76752241 G A SALL3 Missense_Mutation p.E84K 0.48 deleterious(0.04) unknown(0) TCGA-FS-A1ZZ-06 18 77137262 77137262 C T ATP9B Missense_Mutation p.T1108I 0.41 tolerated(0.43) benign(0.002) TCGA-FS-A1ZZ-06 19 10078597 10078597 C T COL5A3 Missense_Mutation p.G1463S 0.44 unknown(0) TCGA-FS-A1ZZ-06 19 10116815 10116815 C T COL5A3 Missense_Mutation p.G61S 0.65 unknown(0) TCGA-FS-A1ZZ-06 19 10578119 10578119 C T PDE4A Missense_Mutation p.S828F 0.43 tolerated_low_confidence(0.14) benign(0.003) TCGA-FS-A1ZZ-06 19 11576999 11576999 C T ELAVL3 Silent p.T107T 0.46 TCGA-FS-A1ZZ-06 19 11796589 11796589 G A ZNF833P RNA 0.39 TCGA-FS-A1ZZ-06 19 12385791 12385791 G A ZNF44 Missense_Mutation p.P111L 0.38 tolerated(1) benign(0) TCGA-FS-A1ZZ-06 19 12502508 12502508 G A ZNF799 Missense_Mutation p.S235F 0.44 tolerated(0.07) probably_damaging(0.949) TCGA-FS-A1ZZ-06 19 12692182 12692182 G A ZNF490 Missense_Mutation p.S236F 0.48 deleterious(0.04) possibly_damaging(0.665) TCGA-FS-A1ZZ-06 19 12817279 12817279 G A TNPO2 Intron 0.40 TCGA-FS-A1ZZ-06 19 13015451 13015451 C T SYCE2 Missense_Mutation p.G54E 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 19 14000427 14000427 G A C19orf57 Silent p.G414G 0.48 TCGA-FS-A1ZZ-06 19 14074027 14074027 G A RFX1 Silent p.L877L 0.32 TCGA-FS-A1ZZ-06 19 1489865 1489865 C T PCSK4 Missense_Mutation p.R74Q 0.45 tolerated(0.32) benign(0.044) TCGA-FS-A1ZZ-06 19 14952516 14952516 G A OR7A10 Silent p.P58P 0.30 TCGA-FS-A1ZZ-06 19 15052942 15052942 C T OR7C2 Silent p.I214I 0.40 TCGA-FS-A1ZZ-06 19 15072875 15072875 G A SLC1A6 Missense_Mutation p.L292F 0.51 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.29 TCGA-FS-A1ZZ-06 19 15853087 15853087 G A OR10H3 Silent p.R295R 0.46 TCGA-FS-A1ZZ-06 19 15989525 15989525 C T CYP4F2 3'UTR 0.37 TCGA-FS-A1ZZ-06 19 16038149 16038149 C T CYP4F11 Missense_Mutation p.G133E 0.44 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 19 18285849 18285849 G A IFI30 Splice_Site p.X45_splice 0.43 TCGA-FS-A1ZZ-06 19 18779689 18779689 G A KLHL26 Missense_Mutation p.M494I 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZZ-06 19 19654542 19654542 C T CILP2 Silent p.L396L 0.48 TCGA-FS-A1ZZ-06 19 19655605 19655605 C T CILP2 Missense_Mutation p.P751S 0.25 deleterious(0.03) possibly_damaging(0.728) TCGA-FS-A1ZZ-06 19 19790253 19790253 C T ZNF101 Missense_Mutation p.S152F 0.37 tolerated(0.59) benign(0.016) TCGA-FS-A1ZZ-06 19 20117432 20117432 C A ZNF682 Silent p.A293A 0.40 TCGA-FS-A1ZZ-06 19 21719375 21719375 C T ZNF429 Nonsense_Mutation p.Q174* 0.35 TCGA-FS-A1ZZ-06 19 21990847 21990847 G A ZNF43 Silent p.T664T 0.40 TCGA-FS-A1ZZ-06 19 2216683 2216683 C T DOT1L Missense_Mutation p.P776L 0.54 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 19 2247835 2247835 G A SF3A2 Missense_Mutation p.G229R 0.60 tolerated_low_confidence(0.1) unknown(0) TCGA-FS-A1ZZ-06 19 22784257 22784257 G A AC011467.1 5'Flank 0.33 TCGA-FS-A1ZZ-06 19 22941304 22941304 T G ZNF99 Missense_Mutation p.R469S 0.40 tolerated(0.35) benign(0.17) TCGA-FS-A1ZZ-06 19 23927908 23927908 C T ZNF681 Missense_Mutation p.M148I 0.30 tolerated(0.13) benign(0.107) TCGA-FS-A1ZZ-06 19 2933442 2933442 G A ZNF77 3'UTR 0.40 TCGA-FS-A1ZZ-06 19 35085245 35085245 G A SCGB2B2 Silent p.I27I 0.52 TCGA-FS-A1ZZ-06 19 35642295 35642295 C T FXYD7 Intron 0.41 TCGA-FS-A1ZZ-06 19 3600130 3600130 A T TBXA2R Missense_Mutation p.L168Q 0.35 tolerated(0.08) possibly_damaging(0.805) TCGA-FS-A1ZZ-06 19 36211154 36211154 C T KMT2B Missense_Mutation p.P302L 0.43 unknown(0) TCGA-FS-A1ZZ-06 19 36221660 36221660 C T KMT2B Missense_Mutation p.R1777W 0.29 probably_damaging(0.993) TCGA-FS-A1ZZ-06 19 36230278 36230278 G A IGFLR1 Missense_Mutation p.S324F 0.38 deleterious(0) probably_damaging(0.967) TCGA-FS-A1ZZ-06 19 36236335 36236335 C T PSENEN 5'UTR 0.52 TCGA-FS-A1ZZ-06 19 37118187 37118187 C T ZNF382 Missense_Mutation p.P463L 0.63 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 19 37870132 37870132 G C ZNF527 Missense_Mutation p.R48S 0.43 tolerated(0.1) benign(0.089) TCGA-FS-A1ZZ-06 19 38951133 38951133 G A RYR1 Missense_Mutation p.E827K 0.36 possibly_damaging(0.517) TCGA-FS-A1ZZ-06 19 39877418 39877418 C T PAF1 Silent p.R336R 0.39 TCGA-FS-A1ZZ-06 19 40363084 40363084 C T FCGBP Missense_Mutation p.D4996N 0.27 probably_damaging(0.999) TCGA-FS-A1ZZ-06 19 41257282 41257282 C T SNRPA 5'UTR 0.40 TCGA-FS-A1ZZ-06 19 41594891 41594891 G A CYP2A13 Missense_Mutation p.V80M 0.49 tolerated(0.18) possibly_damaging(0.729) TCGA-FS-A1ZZ-06 19 42181356 42181356 C T CEACAM7 Missense_Mutation p.G261E 0.33 deleterious(0.01) possibly_damaging(0.539) TCGA-FS-A1ZZ-06 19 43097973 43097973 C T CEACAM8 Silent p.G48G 0.34 TCGA-FS-A1ZZ-06 19 43259341 43259341 C T PSG8 Missense_Mutation p.E263K 0.48 tolerated(0.25) possibly_damaging(0.755) TCGA-FS-A1ZZ-06 19 43349212 43349212 C T PSG10P RNA 0.40 TCGA-FS-A1ZZ-06 19 43679591 43679591 G A PSG5 Missense_Mutation p.S247L 0.44 tolerated(0.08) benign(0.254) TCGA-FS-A1ZZ-06 19 43772155 43772155 C T PSG9 Missense_Mutation p.E71K 0.51 tolerated(0.12) benign(0.002) TCGA-FS-A1ZZ-06 19 43772255 43772255 C T PSG9 Silent p.T37T 0.46 TCGA-FS-A1ZZ-06 19 44096028 44096028 G A IRGQ 3'UTR 0.39 TCGA-FS-A1ZZ-06 19 44890838 44890838 C T ZNF285 Silent p.R523R 0.47 TCGA-FS-A1ZZ-06 19 44890960 44890960 G A ZNF285 Missense_Mutation p.P483S 0.48 deleterious(0.03) possibly_damaging(0.848) TCGA-FS-A1ZZ-06 19 45028069 45028069 C T CEACAM20 RNA 0.44 TCGA-FS-A1ZZ-06 19 45207314 45207314 G C CEACAM16 Missense_Mutation p.A137P 0.55 deleterious(0.02) benign(0.133) TCGA-FS-A1ZZ-06 19 46116831 46116831 G A EML2 Missense_Mutation p.H799Y 0.44 deleterious(0.03) possibly_damaging(0.796) TCGA-FS-A1ZZ-06 19 46330784 46330784 G A SYMPK Missense_Mutation p.S722F 0.59 tolerated(0.55) benign(0.429) TCGA-FS-A1ZZ-06 19 46914618 46914618 C T CCDC8 Missense_Mutation p.G484R 0.50 probably_damaging(1) TCGA-FS-A1ZZ-06 19 47151904 47151904 C T DACT3 Nonsense_Mutation p.W575* 0.52 TCGA-FS-A1ZZ-06 19 47422257 47422257 C T ARHGAP35 Nonsense_Mutation p.R109* 0.43 TCGA-FS-A1ZZ-06 19 47823646 47823646 C T C5AR1 Silent p.I204I 0.37 TCGA-FS-A1ZZ-06 19 48253490 48253490 C T GLTSCR2 Silent p.P115P 0.45 TCGA-FS-A1ZZ-06 19 48253491 48253491 C T GLTSCR2 Missense_Mutation p.L116F 0.47 deleterious(0.03) possibly_damaging(0.529) TCGA-FS-A1ZZ-06 19 49129386 49129386 C T SPHK2 Missense_Mutation p.P93L 0.38 tolerated(0.47) benign(0.005) TCGA-FS-A1ZZ-06 19 49309780 49309780 G A BCAT2 Silent p.S98S 0.46 TCGA-FS-A1ZZ-06 19 49348810 49348810 G A PLEKHA4 Missense_Mutation p.P544S 0.45 tolerated(0.06) benign(0.024) TCGA-FS-A1ZZ-06 19 49362198 49362198 G A PLEKHA4 Silent p.P297P 0.42 TCGA-FS-A1ZZ-06 19 49497051 49497051 T C RUVBL2 5'UTR 0.55 TCGA-FS-A1ZZ-06 19 5039969 5039969 C T KDM4B Silent p.I88I 0.37 TCGA-FS-A1ZZ-06 19 50548183 50548183 C T ZNF473 Silent p.T161T 0.44 TCGA-FS-A1ZZ-06 19 51135714 51135714 G A SYT3 Missense_Mutation p.P168L 0.41 tolerated(0.15) probably_damaging(0.997) TCGA-FS-A1ZZ-06 19 51465129 51465129 G A KLK6 Silent p.F151F 0.51 TCGA-FS-A1ZZ-06 19 51729081 51729081 C T CD33 Silent p.I147I 0.47 TCGA-FS-A1ZZ-06 19 51984888 51984888 G A CEACAM18 Silent p.Q275Q 0.42 TCGA-FS-A1ZZ-06 19 5244244 5244244 G A PTPRS Missense_Mutation p.P413L 0.44 deleterious(0.03) probably_damaging(0.978) TCGA-FS-A1ZZ-06 19 5244245 5244245 G A PTPRS Missense_Mutation p.P413S 0.41 deleterious(0.04) probably_damaging(0.967) TCGA-FS-A1ZZ-06 19 52663788 52663788 G A ZNF836 Silent p.S24S 0.46 TCGA-FS-A1ZZ-06 19 52663789 52663789 G A ZNF836 Missense_Mutation p.S24F 0.46 tolerated(0.17) benign(0.214) TCGA-FS-A1ZZ-06 19 52825504 52825504 G A ZNF480 Nonsense_Mutation p.W334* 0.41 TCGA-FS-A1ZZ-06 19 53269487 53269487 G A ZNF600 Missense_Mutation p.R508C 0.45 tolerated(0.07) possibly_damaging(0.828) TCGA-FS-A1ZZ-06 19 53385134 53385134 A G ZNF320 Missense_Mutation p.I82T 0.40 tolerated(0.11) benign(0.01) TCGA-FS-A1ZZ-06 19 53667726 53667726 G A ZNF665 Nonsense_Mutation p.R673* 0.57 TCGA-FS-A1ZZ-06 19 54760034 54760034 G A LILRB5 Missense_Mutation p.S176F 0.47 tolerated(0.78) benign(0.022) TCGA-FS-A1ZZ-06 19 54803190 54803190 C T LILRA3 Missense_Mutation p.E163K 0.50 tolerated(0.95) benign(0.003) TCGA-FS-A1ZZ-06 19 54822648 54822648 C T LILRA5 Intron 0.43 TCGA-FS-A1ZZ-06 19 54822649 54822649 C T LILRA5 Intron 0.42 TCGA-FS-A1ZZ-06 19 54849831 54849831 C T LILRA4 Missense_Mutation p.G64E 0.48 deleterious(0.05) possibly_damaging(0.569) TCGA-FS-A1ZZ-06 19 55146569 55146569 G A LILRB1 Missense_Mutation p.D501N 0.29 deleterious(0.03) benign(0.257) TCGA-FS-A1ZZ-06 19 55221911 55221911 C T AC098784.2 3'Flank 0.47 TCGA-FS-A1ZZ-06 19 55250025 55250025 C T KIR2DL3 Silent p.V5V 0.38 TCGA-FS-A1ZZ-06 19 55294968 55294968 G A KIR2DL1 Missense_Mutation p.G283E 0.93 tolerated(1) probably_damaging(1) TCGA-FS-A1ZZ-06 19 55693499 55693499 C T PTPRH Missense_Mutation p.G1028E 0.41 probably_damaging(0.999) TCGA-FS-A1ZZ-06 19 56244308 56244308 C T NLRP9 Missense_Mutation p.G297R 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 19 56300200 56300200 C T NLRP11 Missense_Mutation p.S943N 0.53 tolerated(0.13) benign(0.004) TCGA-FS-A1ZZ-06 19 56321635 56321635 C T NLRP11 Missense_Mutation p.G114E 0.44 tolerated(1) benign(0.01) TCGA-FS-A1ZZ-06 19 56363466 56363466 C T NLRP4 Missense_Mutation p.S7F 0.39 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 19 56390161 56390161 T C NLRP4 Silent p.L900L 0.40 TCGA-FS-A1ZZ-06 19 56443675 56443675 C T NLRP13 Translation_Start_Site p.M1? 0.54 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-FS-A1ZZ-06 19 56565005 56565005 T C NLRP5 Silent p.L1044L 0.47 TCGA-FS-A1ZZ-06 19 56733044 56733044 C T ZSCAN5A Missense_Mutation p.G464E 0.52 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 19 56918423 56918423 C T ZNF583 5'UTR 0.55 TCGA-FS-A1ZZ-06 19 57088722 57088722 G A ZNF470 Missense_Mutation p.E309K 0.57 tolerated(0.23) probably_damaging(0.997) TCGA-FS-A1ZZ-06 19 57286743 57286743 C T ZIM2 Silent p.K299K 0.43 TCGA-FS-A1ZZ-06 19 57642176 57642176 C T USP29 Silent p.S711S 0.35 TCGA-FS-A1ZZ-06 19 57931662 57931662 C T ZNF17 Missense_Mutation p.H268Y 0.37 deleterious(0.03) possibly_damaging(0.56) TCGA-FS-A1ZZ-06 19 5832373 5832373 C T FUT6 Nonsense_Mutation p.W69* 0.31 TCGA-FS-A1ZZ-06 19 5866939 5866939 G A FUT5 Silent p.P266P 0.36 TCGA-FS-A1ZZ-06 19 5932511 5932511 G A RANBP3 Missense_Mutation p.R173C 0.41 deleterious(0) probably_damaging(0.978) TCGA-FS-A1ZZ-06 19 6677879 6677879 G A C3 3'UTR 0.50 TCGA-FS-A1ZZ-06 19 6986317 6986317 G A EMR4P RNA 0.44 TCGA-FS-A1ZZ-06 19 7595174 7595174 C T MCOLN1 Silent p.F454F 0.43 TCGA-FS-A1ZZ-06 19 7805601 7805601 G A CD209 3'UTR 0.62 TCGA-FS-A1ZZ-06 19 7911465 7911465 C T EVI5L Nonsense_Mutation p.Q13* 0.53 TCGA-FS-A1ZZ-06 19 8468478 8468478 C T RAB11B 3'UTR 0.45 TCGA-FS-A1ZZ-06 19 8650481 8650481 C T ADAMTS10 Silent p.S908S 0.40 TCGA-FS-A1ZZ-06 19 885838 885838 G A MED16 Missense_Mutation p.L271F 0.33 tolerated(0.3) possibly_damaging(0.849) TCGA-FS-A1ZZ-06 19 8953751 8953751 C T MBD3L1 Missense_Mutation p.P133S 0.62 tolerated(0.12) possibly_damaging(0.692) TCGA-FS-A1ZZ-06 19 9047536 9047536 G A MUC16 Silent p.T11365T 0.44 TCGA-FS-A1ZZ-06 19 9065829 9065829 G A MUC16 Missense_Mutation p.S7206F 0.45 unknown(0) TCGA-FS-A1ZZ-06 19 9069395 9069395 C T MUC16 Silent p.G6017G 0.38 TCGA-FS-A1ZZ-06 19 9074546 9074546 C T MUC16 Silent p.E4300E 0.39 TCGA-FS-A1ZZ-06 19 9074547 9074547 T A MUC16 Missense_Mutation p.E4300V 0.37 unknown(0) TCGA-FS-A1ZZ-06 19 9076958 9076958 C T MUC16 Silent p.E3496E 0.45 TCGA-FS-A1ZZ-06 19 9091108 9091108 G A MUC16 Missense_Mutation p.S236F 0.43 unknown(0) TCGA-FS-A1ZZ-06 19 9267342 9267342 C T ZNF317 Missense_Mutation p.S27L 0.45 tolerated_low_confidence(0.11) benign(0.002) TCGA-FS-A1ZZ-06 19 9324610 9324610 C T OR7D4 Missense_Mutation p.E302K 0.59 tolerated(0.76) benign(0.009) TCGA-FS-A1ZZ-06 19 9453349 9453349 C T ZNF559 Missense_Mutation p.P408S 0.31 tolerated(0.08) benign(0.338) TCGA-FS-A1ZZ-06 1 103385916 103385916 G A COL11A1 Missense_Mutation p.P1238L 0.92 unknown(0) TCGA-FS-A1ZZ-06 1 109731707 109731707 A G KIAA1324 Silent p.A413A 0.88 TCGA-FS-A1ZZ-06 1 110086229 110086229 T C GPR61 Silent p.C195C 1.00 TCGA-FS-A1ZZ-06 1 11333829 11333829 C T UBIAD1 Missense_Mutation p.P81S 0.44 deleterious(0.04) benign(0.309) TCGA-FS-A1ZZ-06 1 113662058 113662058 C T LRIG2 Missense_Mutation p.P962S 0.40 tolerated(0.95) benign(0) TCGA-FS-A1ZZ-06 1 114942115 114942115 G A TRIM33 Silent p.V1028V 0.95 TCGA-FS-A1ZZ-06 1 115258681 115258681 G A NRAS Missense_Mutation p.P34L 0.96 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 1 11574475 11574475 G A PTCHD2 Missense_Mutation p.D449N 0.92 tolerated(0.09) possibly_damaging(0.848) TCGA-FS-A1ZZ-06 1 115829023 115829023 C T NGF Missense_Mutation p.E132K 0.98 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 1 116225035 116225035 C T VANGL1 Missense_Mutation p.T288I 0.93 deleterious(0.03) benign(0.329) TCGA-FS-A1ZZ-06 1 118624248 118624248 C T SPAG17 Missense_Mutation p.E594K 0.94 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 1 119427283 119427283 A G TBX15 3'UTR 0.82 TCGA-FS-A1ZZ-06 1 120437687 120437687 G A ADAM30 Missense_Mutation p.R425W 0.93 deleterious(0.02) benign(0.022) TCGA-FS-A1ZZ-06 1 12371954 12371954 A G VPS13D Missense_Mutation p.R2303G 0.47 benign(0) TCGA-FS-A1ZZ-06 1 12855621 12855621 A C PRAMEF1 Missense_Mutation p.T301P 0.79 deleterious(0) possibly_damaging(0.836) TCGA-FS-A1ZZ-06 1 12887231 12887231 G A PRAMEF11 Missense_Mutation p.S209F 0.77 tolerated(0.06) benign(0.009) TCGA-FS-A1ZZ-06 1 13669144 13669144 C T PRAMEF14 Missense_Mutation p.D396N 0.42 tolerated(1) benign(0.004) TCGA-FS-A1ZZ-06 1 147131765 147131765 C T ACP6 Silent p.L115L 0.99 TCGA-FS-A1ZZ-06 1 148932920 148932920 G A RP11-14N7.2 Intron 0.07 TCGA-FS-A1ZZ-06 1 152748928 152748928 G A LCE1F Silent p.P27P 0.95 TCGA-FS-A1ZZ-06 1 152784973 152784973 C G LCE1B Missense_Mutation p.I17M 0.99 tolerated_low_confidence(0.18) unknown(0) TCGA-FS-A1ZZ-06 1 153234258 153234258 G A LOR Missense_Mutation p.G278E 0.94 unknown(0) TCGA-FS-A1ZZ-06 1 153362683 153362683 T G S100A8 Missense_Mutation p.I60L 0.20 tolerated(0.25) benign(0.139) TCGA-FS-A1ZZ-06 1 153362684 153362684 A C S100A8 Missense_Mutation p.D59E 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 1 154090246 154090246 A T NUP210L Silent p.V525V 0.97 TCGA-FS-A1ZZ-06 1 155239408 155239408 G A CLK2 Silent p.Y90Y 0.96 TCGA-FS-A1ZZ-06 1 158390140 158390140 G A OR10K2 Nonsense_Mutation p.Q173* 0.94 TCGA-FS-A1ZZ-06 1 158645977 158645977 G A SPTA1 Missense_Mutation p.R356C 0.96 tolerated(0.06) benign(0.262) TCGA-FS-A1ZZ-06 1 159163743 159163743 G A CADM3 Missense_Mutation p.D236N 0.97 deleterious(0) probably_damaging(0.92) TCGA-FS-A1ZZ-06 1 159505762 159505762 G A OR10J5 Silent p.F12F 0.97 TCGA-FS-A1ZZ-06 1 159778147 159778147 C T FCRL6 Missense_Mutation p.R78C 0.98 deleterious(0) possibly_damaging(0.823) TCGA-FS-A1ZZ-06 1 16064662 16064662 T A SLC25A34 Silent p.A173A 0.95 TCGA-FS-A1ZZ-06 1 161683039 161683039 C T FCRLA Silent p.L340L 0.98 TCGA-FS-A1ZZ-06 1 162372562 162372562 G A SH2D1B Silent p.I55I 0.18 TCGA-FS-A1ZZ-06 1 16474942 16474942 C T EPHA2 Missense_Mutation p.E252K 0.96 deleterious(0.02) benign(0.043) TCGA-FS-A1ZZ-06 1 165218847 165218847 G A LMX1A Silent p.F98F 1.00 TCGA-FS-A1ZZ-06 1 16534707 16534707 C T ARHGEF19 Silent p.R142R 1.00 TCGA-FS-A1ZZ-06 1 165859599 165859599 G A UCK2 Silent p.P86P 0.94 TCGA-FS-A1ZZ-06 1 167096085 167096085 G A DUSP27 Missense_Mutation p.E573K 0.98 deleterious(0.02) benign(0.063) TCGA-FS-A1ZZ-06 1 16736220 16736220 C T SPATA21 Missense_Mutation p.G155R 0.50 deleterious(0.04) possibly_damaging(0.59) TCGA-FS-A1ZZ-06 1 169576202 169576202 G A SELP Missense_Mutation p.P502S 0.97 tolerated(0.14) benign(0.038) TCGA-FS-A1ZZ-06 1 169699697 169699697 C T SELE Silent p.L197L 0.99 TCGA-FS-A1ZZ-06 1 170941020 170941020 G A MROH9 Silent p.Q204Q 0.95 TCGA-FS-A1ZZ-06 1 171604999 171604999 C T MYOC 3'UTR 0.33 TCGA-FS-A1ZZ-06 1 173010752 173010752 T A TNFSF18 Missense_Mutation p.I119F 0.97 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZZ-06 1 173490494 173490494 A C SLC9C2 Missense_Mutation p.C895W 0.95 deleterious(0.03) probably_damaging(1) TCGA-FS-A1ZZ-06 1 175046622 175046622 C T TNN Missense_Mutation p.S23L 0.94 tolerated(0.13) probably_damaging(0.997) TCGA-FS-A1ZZ-06 1 175365852 175365852 C T TNR Silent p.V356V 0.17 TCGA-FS-A1ZZ-06 1 176708800 176708800 T A PAPPA2 Missense_Mutation p.F1279L 0.23 tolerated(0.74) benign(0.003) TCGA-FS-A1ZZ-06 1 177249596 177249596 G A BRINP2 Silent p.G428G 0.98 TCGA-FS-A1ZZ-06 1 177908848 177908848 C T SEC16B Missense_Mutation p.G731E 0.94 tolerated(0.21) benign(0.048) TCGA-FS-A1ZZ-06 1 178820428 178820428 C T ANGPTL1 Missense_Mutation p.G438R 0.16 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 1 181686331 181686331 T G CACNA1E Missense_Mutation p.V473G 0.98 deleterious(0) benign(0.307) TCGA-FS-A1ZZ-06 1 181702848 181702848 C T CACNA1E Missense_Mutation p.P1075L 0.21 deleterious(0.04) benign(0.02) TCGA-FS-A1ZZ-06 1 186062788 186062788 G A HMCN1 Missense_Mutation p.G3395R 0.23 probably_damaging(1) TCGA-FS-A1ZZ-06 1 18692055 18692055 G A IGSF21 Silent p.P293P 0.89 TCGA-FS-A1ZZ-06 1 18809786 18809786 G A KLHDC7A Missense_Mutation p.D771N 0.92 tolerated(0.27) unknown(0) TCGA-FS-A1ZZ-06 1 190067264 190067264 G A BRINP3 Missense_Mutation p.R729C 0.30 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 1 190067595 190067595 C T BRINP3 Nonsense_Mutation p.W618* 0.95 TCGA-FS-A1ZZ-06 1 19168269 19168269 G A TAS1R2 Silent p.F515F 0.96 TCGA-FS-A1ZZ-06 1 192321268 192321268 G A RGS21 Silent p.T60T 0.97 TCGA-FS-A1ZZ-06 1 19445392 19445392 G A UBR4 Silent p.T3505T 0.88 TCGA-FS-A1ZZ-06 1 196309516 196309516 G A KCNT2 Missense_Mutation p.H580Y 0.93 tolerated(0.07) benign(0.175) TCGA-FS-A1ZZ-06 1 197026252 197026252 A G F13B Silent p.Y354Y 0.97 TCGA-FS-A1ZZ-06 1 197159928 197159928 G A ZBTB41 Silent p.S454S 1.00 TCGA-FS-A1ZZ-06 1 197160868 197160868 T A ZBTB41 Missense_Mutation p.N428Y 0.40 deleterious(0.02) possibly_damaging(0.664) TCGA-FS-A1ZZ-06 1 197390648 197390648 G A CRB1 Missense_Mutation p.D564N 0.97 deleterious(0.04) possibly_damaging(0.665) TCGA-FS-A1ZZ-06 1 201060870 201060870 G A CACNA1S Missense_Mutation p.H198Y 0.98 deleterious(0) probably_damaging(0.976) TCGA-FS-A1ZZ-06 1 204093774 204093774 C T SOX13 Missense_Mutation p.R461C 1.00 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZZ-06 1 204943867 204943867 C T NFASC Missense_Mutation p.R492C 0.97 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZZ-06 1 205588962 205588962 G A ELK4 Intron 0.92 TCGA-FS-A1ZZ-06 1 205813229 205813229 C T PM20D1 Silent p.K231K 0.97 TCGA-FS-A1ZZ-06 1 207646436 207646436 T G CR2 Missense_Mutation p.C630W 0.96 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 1 209956583 209956583 G A C1orf74 Nonsense_Mutation p.Q133* 0.45 TCGA-FS-A1ZZ-06 1 213434904 213434904 T C RPS6KC1 Missense_Mutation p.V972A 0.97 deleterious(0.03) possibly_damaging(0.816) TCGA-FS-A1ZZ-06 1 215972453 215972453 G A USH2A Missense_Mutation p.P3252S 0.95 benign(0.175) TCGA-FS-A1ZZ-06 1 216497555 216497555 C T USH2A Missense_Mutation p.G428E 0.98 possibly_damaging(0.651) TCGA-FS-A1ZZ-06 1 216595659 216595659 G A USH2A Missense_Mutation p.S7L 0.94 benign(0.006) TCGA-FS-A1ZZ-06 1 216850662 216850662 C T ESRRG Silent p.Q81Q 0.98 TCGA-FS-A1ZZ-06 1 22168773 22168773 G A HSPG2 Missense_Mutation p.S3004F 0.29 benign(0.021) TCGA-FS-A1ZZ-06 1 224927142 224927142 G A CNIH3 3'UTR 0.98 TCGA-FS-A1ZZ-06 1 225971047 225971047 G C SRP9 Missense_Mutation p.V40L 0.98 tolerated(1) benign(0.001) TCGA-FS-A1ZZ-06 1 226076643 226076643 T G LEFTY1 Missense_Mutation p.T42P 0.95 tolerated(0.17) benign(0.089) TCGA-FS-A1ZZ-06 1 228003849 228003849 G A PRSS38 Silent p.R69R 0.95 TCGA-FS-A1ZZ-06 1 229773816 229773816 C T URB2 Silent p.A1152A 0.95 TCGA-FS-A1ZZ-06 1 231954091 231954091 G A DISC1 Silent p.T603T 0.19 TCGA-FS-A1ZZ-06 1 233134073 233134073 C T PCNXL2 Silent p.Q1905Q 0.98 TCGA-FS-A1ZZ-06 1 236212091 236212091 A G NID1 Missense_Mutation p.F142L 0.48 deleterious(0) benign(0.162) TCGA-FS-A1ZZ-06 1 237995876 237995876 C T RYR2 Nonsense_Mutation p.Q4945* 0.93 TCGA-FS-A1ZZ-06 1 240371124 240371124 C T FMN2 Silent p.P1004P 0.28 TCGA-FS-A1ZZ-06 1 240656347 240656347 G A GREM2 Silent p.P143P 0.99 TCGA-FS-A1ZZ-06 1 241755436 241755436 C T KMO Missense_Mutation p.S481F 0.96 tolerated_low_confidence(0.19) benign(0.008) TCGA-FS-A1ZZ-06 1 24201950 24201950 G A CNR2 Missense_Mutation p.A53V 0.96 tolerated(0.68) benign(0.007) TCGA-FS-A1ZZ-06 1 242271122 242271122 C T PLD5 Missense_Mutation p.D364N 0.12 deleterious(0) probably_damaging(0.981) TCGA-FS-A1ZZ-06 1 24433595 24433595 G A MYOM3 Nonsense_Mutation p.Q124* 1.00 TCGA-FS-A1ZZ-06 1 246903475 246903475 T A SCCPDH Missense_Mutation p.F129Y 0.98 tolerated(0.42) benign(0.152) TCGA-FS-A1ZZ-06 1 247582364 247582364 G A NLRP3 Missense_Mutation p.D90N 0.95 deleterious(0.03) benign(0.004) TCGA-FS-A1ZZ-06 1 247587682 247587682 G A NLRP3 Missense_Mutation p.E313K 0.96 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZZ-06 1 247695083 247695083 G A OR2C3 Missense_Mutation p.S244F 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 1 247695172 247695172 G A OR2C3 Silent p.L214L 0.97 TCGA-FS-A1ZZ-06 1 247737503 247737503 C T GCSAML Missense_Mutation p.P76L 0.99 tolerated(0.33) possibly_damaging(0.451) TCGA-FS-A1ZZ-06 1 247875604 247875604 C A OR6F1 Missense_Mutation p.G152C 0.40 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 1 247875848 247875848 C T OR6F1 Silent p.E70E 0.99 TCGA-FS-A1ZZ-06 1 247921673 247921673 G A OR1C1 Silent p.F12F 0.29 TCGA-FS-A1ZZ-06 1 248039801 248039801 C T TRIM58 3'UTR 0.98 TCGA-FS-A1ZZ-06 1 248224664 248224664 G A OR2L3 Missense_Mutation p.M227I 0.96 deleterious(0.05) benign(0.17) TCGA-FS-A1ZZ-06 1 248402794 248402794 C T OR2M4 Silent p.S188S 0.97 TCGA-FS-A1ZZ-06 1 248487244 248487244 G A OR2M7 Silent p.F209F 0.96 TCGA-FS-A1ZZ-06 1 25573264 25573264 G A C1orf63 Missense_Mutation p.S64F 0.94 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A1ZZ-06 1 26597588 26597588 C T CEP85 Missense_Mutation p.S578L 0.91 tolerated(0.31) benign(0.009) TCGA-FS-A1ZZ-06 1 27680248 27680248 G A SYTL1 Missense_Mutation p.E532K 0.97 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZZ-06 1 33402701 33402701 G A RNF19B Silent p.P635P 0.96 TCGA-FS-A1ZZ-06 1 33985159 33985159 C T CSMD2 Missense_Mutation p.E3475K 0.96 deleterious(0.04) benign(0.402) TCGA-FS-A1ZZ-06 1 34068071 34068071 G A CSMD2 Missense_Mutation p.S2205F 0.93 tolerated(0.24) benign(0.053) TCGA-FS-A1ZZ-06 1 34209078 34209078 G A CSMD2 Missense_Mutation p.A619V 0.92 tolerated(0.48) benign(0.088) TCGA-FS-A1ZZ-06 1 34330057 34330057 G A HMGB4 Missense_Mutation p.D89N 0.91 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A1ZZ-06 1 35365784 35365784 C T DLGAP3 Missense_Mutation p.A400T 0.94 deleterious(0.01) benign(0.307) TCGA-FS-A1ZZ-06 1 40879873 40879873 C T SMAP2 Missense_Mutation p.P178S 0.90 deleterious(0.04) benign(0.007) TCGA-FS-A1ZZ-06 1 41283850 41283850 C T KCNQ4 Silent p.I140I 0.94 TCGA-FS-A1ZZ-06 1 54332570 54332570 G A YIPF1 Missense_Mutation p.A170V 0.97 tolerated(0.14) benign(0.019) TCGA-FS-A1ZZ-06 1 55512301 55512301 G A PCSK9 Missense_Mutation p.D169N 0.93 tolerated(0.37) benign(0.002) TCGA-FS-A1ZZ-06 1 57254736 57254736 G A C1orf168 Missense_Mutation p.P277S 0.96 tolerated(0.13) probably_damaging(0.987) TCGA-FS-A1ZZ-06 1 57258448 57258448 C T C1orf168 Missense_Mutation p.R13Q 0.93 tolerated(0.1) benign(0.266) TCGA-FS-A1ZZ-06 1 57397551 57397551 C T C8B Missense_Mutation p.G518E 0.92 tolerated(0.31) benign(0.154) TCGA-FS-A1ZZ-06 1 57476384 57476384 G A DAB1 Missense_Mutation p.P551L 0.94 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A1ZZ-06 1 57476871 57476871 C T DAB1 Missense_Mutation p.D507N 0.94 tolerated(0.36) probably_damaging(0.937) TCGA-FS-A1ZZ-06 1 6188267 6188267 C T CHD5 Missense_Mutation p.D1248N 0.92 deleterious(0.03) benign(0.005) TCGA-FS-A1ZZ-06 1 6188268 6188268 C T CHD5 Silent p.K1247K 0.90 TCGA-FS-A1ZZ-06 1 67147816 67147816 C T SGIP1 Missense_Mutation p.P360L 0.93 tolerated_low_confidence(0.3) possibly_damaging(0.713) TCGA-FS-A1ZZ-06 1 75036996 75036996 C T C1orf173 Silent p.Q1466Q 0.91 TCGA-FS-A1ZZ-06 1 87043668 87043668 C T CLCA4 Missense_Mutation p.R679W 0.92 tolerated(0.26) benign(0.003) TCGA-FS-A1ZZ-06 1 87043677 87043677 G A CLCA4 Missense_Mutation p.G682R 0.90 tolerated(0.07) benign(0.417) TCGA-FS-A1ZZ-06 1 87043678 87043678 G A CLCA4 Missense_Mutation p.G682E 0.90 deleterious(0.04) probably_damaging(0.931) TCGA-FS-A1ZZ-06 1 87570169 87570169 T C HS2ST1 Silent p.L287L 0.95 TCGA-FS-A1ZZ-06 1 892513 892513 T G NOC2L Missense_Mutation p.E107A 0.40 deleterious(0.01) benign(0.284) TCGA-FS-A1ZZ-06 1 93996314 93996314 C T FNBP1L Silent p.A171A 0.92 TCGA-FS-A1ZZ-06 1 94982685 94982685 G C ABCD3 Nonstop_Mutation p.*660Yext*18 0.95 TCGA-FS-A1ZZ-06 1 95448568 95448568 T C ALG14 3'UTR 0.79 TCGA-FS-A1ZZ-06 1 9713715 9713715 G A C1orf200 3'UTR 0.42 TCGA-FS-A1ZZ-06 20 1963746 1963746 C T PDYN 5'UTR 0.54 TCGA-FS-A1ZZ-06 20 20226842 20226842 G A C20orf26 Silent p.R714R 0.45 TCGA-FS-A1ZZ-06 20 2291059 2291059 G A TGM3 Silent p.L139L 0.50 TCGA-FS-A1ZZ-06 20 2321101 2321101 G A TGM3 Silent p.K652K 0.36 TCGA-FS-A1ZZ-06 20 23472382 23472382 G A CST8 Silent p.K26K 0.46 TCGA-FS-A1ZZ-06 20 23476572 23476572 C T CST8 3'UTR 0.35 TCGA-FS-A1ZZ-06 20 2413358 2413358 C T TGM6 3'UTR 0.37 TCGA-FS-A1ZZ-06 20 2464164 2464164 A G ZNF343 Silent p.L481L 0.33 TCGA-FS-A1ZZ-06 20 2559842 2559842 C T TMC2 Silent p.I232I 0.47 TCGA-FS-A1ZZ-06 20 2592879 2592879 C T TMC2 Silent p.L546L 0.48 TCGA-FS-A1ZZ-06 20 2594002 2594002 G A TMC2 Intron 0.56 TCGA-FS-A1ZZ-06 20 2846048 2846048 C T VPS16 Silent p.L726L 0.41 TCGA-FS-A1ZZ-06 20 29965206 29965206 C T DEFB118 3'Flank 0.45 TCGA-FS-A1ZZ-06 20 3005228 3005228 C T PTPRA Silent p.I525I 0.52 TCGA-FS-A1ZZ-06 20 30803149 30803149 C T POFUT1 Silent p.F108F 0.43 TCGA-FS-A1ZZ-06 20 31577467 31577467 C T SUN5 Missense_Mutation p.G191E 0.38 tolerated(1) probably_damaging(1) TCGA-FS-A1ZZ-06 20 31763300 31763300 G A BPIFA2 Silent p.Q166Q 0.42 TCGA-FS-A1ZZ-06 20 3210416 3210416 C T SLC4A11 Nonsense_Mutation p.W542* 0.47 TCGA-FS-A1ZZ-06 20 32194867 32194867 C T CBFA2T2 Missense_Mutation p.P56L 0.48 tolerated(0.08) benign(0.15) TCGA-FS-A1ZZ-06 20 33440060 33440060 G A GGT7 Silent p.P495P 0.45 TCGA-FS-A1ZZ-06 20 33874741 33874741 G A FAM83C Missense_Mutation p.S614F 0.39 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-FS-A1ZZ-06 20 34572609 34572609 G A CNBD2 Missense_Mutation p.E209K 0.45 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 20 34773072 34773072 C T EPB41L1 Silent p.I200I 0.38 TCGA-FS-A1ZZ-06 20 35547838 35547838 G A SAMHD1 Missense_Mutation p.P261S 0.40 tolerated(0.86) benign(0.403) TCGA-FS-A1ZZ-06 20 35838557 35838557 C T RPN2 Silent p.F325F 0.41 TCGA-FS-A1ZZ-06 20 40033886 40033886 G A CHD6 Missense_Mutation p.P2499S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A1ZZ-06 20 40790031 40790031 C T PTPRT Missense_Mutation p.M881I 0.44 deleterious(0) benign(0.109) TCGA-FS-A1ZZ-06 20 42328579 42328579 C T MYBL2 Silent p.S282S 0.26 TCGA-FS-A1ZZ-06 20 42965979 42965979 G A R3HDML Missense_Mutation p.R61K 0.44 tolerated(0.66) benign(0.003) TCGA-FS-A1ZZ-06 20 43804764 43804764 C T PI3 Silent p.F114F 0.52 TCGA-FS-A1ZZ-06 20 43933247 43933247 G A MATN4 Silent p.L88L 0.44 TCGA-FS-A1ZZ-06 20 44692190 44692190 G A NCOA5 Missense_Mutation p.A320V 0.59 tolerated(0.88) benign(0.227) TCGA-FS-A1ZZ-06 20 47741072 47741072 G A STAU1 Missense_Mutation p.S221L 0.48 tolerated(0.18) benign(0.147) TCGA-FS-A1ZZ-06 20 47859199 47859199 C T DDX27 Silent p.L760L 0.42 TCGA-FS-A1ZZ-06 20 48562680 48562680 C T RNF114 Missense_Mutation p.P136S 0.53 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZZ-06 20 50221426 50221426 G A ATP9A Silent p.L979L 0.44 TCGA-FS-A1ZZ-06 20 5545699 5545699 G A GPCPD1 Silent p.S431S 0.33 TCGA-FS-A1ZZ-06 20 5545700 5545700 G A GPCPD1 Missense_Mutation p.S431F 0.32 tolerated(0.77) benign(0.004) TCGA-FS-A1ZZ-06 20 56140524 56140524 C T PCK1 Silent p.I511I 0.41 TCGA-FS-A1ZZ-06 20 57766581 57766581 G A ZNF831 Silent p.E169E 0.36 TCGA-FS-A1ZZ-06 20 57829327 57829327 G A ZNF831 Silent p.G1521G 0.50 TCGA-FS-A1ZZ-06 20 5903299 5903299 G A CHGB Missense_Mutation p.G170E 0.36 tolerated(0.43) benign(0.075) TCGA-FS-A1ZZ-06 20 60963546 60963546 A T RPS21 3'UTR 0.39 TCGA-FS-A1ZZ-06 20 61167705 61167705 G A C20orf166 Missense_Mutation p.E59K 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-FS-A1ZZ-06 20 62550851 62550851 C T DNAJC5 Intron 0.50 TCGA-FS-A1ZZ-06 20 62592680 62592680 G A ZNF512B Silent p.I803I 0.37 TCGA-FS-A1ZZ-06 20 861886 861886 C T ANGPT4 Silent p.E293E 0.33 TCGA-FS-A1ZZ-06 20 9317854 9317854 G A PLCB4 Splice_Site p.X55_splice 0.44 TCGA-FS-A1ZZ-06 20 9343600 9343600 C T PLCB4 Missense_Mutation p.P143S 0.52 tolerated(0.13) probably_damaging(0.999) TCGA-FS-A1ZZ-06 20 9353693 9353693 G A PLCB4 Splice_Site p.X229_splice 0.47 TCGA-FS-A1ZZ-06 20 9510314 9510314 G A LAMP5 Silent p.R230R 0.43 TCGA-FS-A1ZZ-06 21 10908892 10908892 G A TPTE Missense_Mutation p.L485F 0.09 deleterious(0.04) possibly_damaging(0.464) TCGA-FS-A1ZZ-06 21 10910308 10910308 G A TPTE Missense_Mutation p.S483L 0.12 tolerated(0.11) benign(0.031) TCGA-FS-A1ZZ-06 21 10996107 10996107 G A TPTE RNA 0.15 TCGA-FS-A1ZZ-06 21 11038949 11038949 G A BAGE2 RNA 0.08 TCGA-FS-A1ZZ-06 21 11039337 11039337 G A BAGE2 RNA 0.07 TCGA-FS-A1ZZ-06 21 15561577 15561577 G A LIPI Silent p.F91F 0.58 TCGA-FS-A1ZZ-06 21 28296687 28296687 C T ADAMTS5 Silent p.T826T 0.47 TCGA-FS-A1ZZ-06 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.64 deleterious_low_confidence(0.03) unknown(0) TCGA-FS-A1ZZ-06 21 31709432 31709432 G A KRTAP27-1 Silent p.L185L 0.51 TCGA-FS-A1ZZ-06 21 31744112 31744112 G A KRTAP13-2 Silent p.L140L 0.34 TCGA-FS-A1ZZ-06 21 34072229 34072229 G A SYNJ1 Missense_Mutation p.S172F 0.48 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 21 34911652 34911652 G A GART Intron 0.47 TCGA-FS-A1ZZ-06 21 35275893 35275893 A T ATP5O Nonsense_Mutation p.Y193* 0.56 TCGA-FS-A1ZZ-06 21 37833619 37833619 G A CLDN14 Silent p.F125F 0.41 TCGA-FS-A1ZZ-06 21 41684095 41684095 G A DSCAM Missense_Mutation p.L659F 0.55 deleterious(0) probably_damaging(0.962) TCGA-FS-A1ZZ-06 21 41711215 41711215 C T DSCAM Silent p.P446P 0.40 TCGA-FS-A1ZZ-06 21 41711223 41711223 C T DSCAM Missense_Mutation p.D444N 0.38 tolerated(0.15) possibly_damaging(0.904) TCGA-FS-A1ZZ-06 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.42 tolerated(0.11) probably_damaging(0.993) TCGA-FS-A1ZZ-06 21 43547300 43547300 A G UMODL1 Missense_Mutation p.T1288A 0.55 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZZ-06 21 43711739 43711739 G A ABCG1 Silent p.L554L 0.33 TCGA-FS-A1ZZ-06 21 43833249 43833249 C T UBASH3A Silent p.L157L 0.48 TCGA-FS-A1ZZ-06 21 45173471 45173471 C G PDXK Silent p.P210P 0.33 TCGA-FS-A1ZZ-06 21 45215096 45215096 C T RRP1 Silent p.S129S 0.38 TCGA-FS-A1ZZ-06 21 45941922 45941922 G A TSPEAR Silent p.T470T 0.45 TCGA-FS-A1ZZ-06 21 45994385 45994385 C T KRTAP10-4 Silent p.C250C 0.49 TCGA-FS-A1ZZ-06 21 46927503 46927503 G A COL18A1 Missense_Mutation p.G1262E 0.38 benign(0.07) TCGA-FS-A1ZZ-06 21 47924366 47924366 C T DIP2A Missense_Mutation p.R250W 0.42 deleterious(0) probably_damaging(0.973) TCGA-FS-A1ZZ-06 21 47986563 47986563 C T DIP2A Missense_Mutation p.S1477F 0.39 deleterious(0) probably_damaging(0.99) TCGA-FS-A1ZZ-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.11 TCGA-FS-A1ZZ-06 22 16287490 16287490 C T POTEH Silent p.R132R 0.18 TCGA-FS-A1ZZ-06 22 19776448 19776448 G A GNB1L Silent p.I256I 0.54 TCGA-FS-A1ZZ-06 22 22036806 22036806 C T PPIL2 Silent p.I156I 0.52 TCGA-FS-A1ZZ-06 22 22550398 22550398 G A IGLV6-57 Silent p.Q25Q 0.39 TCGA-FS-A1ZZ-06 22 23214093 23214093 C T IGLV4-3 Missense_Mutation p.R84C 0.44 deleterious(0.02) benign(0.053) TCGA-FS-A1ZZ-06 22 23237936 23237936 C T IGLL5 3'UTR 0.45 TCGA-FS-A1ZZ-06 22 23630295 23630295 C T BCR Silent p.F846F 0.44 TCGA-FS-A1ZZ-06 22 24167437 24167437 C T SMARCB1 Missense_Mutation p.S274F 0.36 deleterious(0) probably_damaging(0.913) TCGA-FS-A1ZZ-06 22 25016896 25016896 G A GGT1 Missense_Mutation p.D198N 0.26 tolerated(0.7) benign(0.02) TCGA-FS-A1ZZ-06 22 26688826 26688826 C T SEZ6L Silent p.P183P 0.53 TCGA-FS-A1ZZ-06 22 26736483 26736483 G A SEZ6L Silent p.G699G 0.48 TCGA-FS-A1ZZ-06 22 26868811 26868811 G A HPS4 Missense_Mutation p.S124F 0.40 deleterious(0.03) probably_damaging(0.926) TCGA-FS-A1ZZ-06 22 31531668 31531668 G A PLA2G3 3'UTR 0.45 TCGA-FS-A1ZZ-06 22 31669485 31669485 C G LIMK2 Missense_Mutation p.L515V 0.55 tolerated(0.11) possibly_damaging(0.679) TCGA-FS-A1ZZ-06 22 32647781 32647781 G A SLC5A4 Silent p.V96V 0.47 TCGA-FS-A1ZZ-06 22 35661066 35661066 C T HMGXB4 Missense_Mutation p.R229W 0.46 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 22 36537752 36537752 G A APOL3 Silent p.I235I 0.41 TCGA-FS-A1ZZ-06 22 36960495 36960495 C T CACNG2 Missense_Mutation p.R292K 0.34 tolerated(0.05) possibly_damaging(0.815) TCGA-FS-A1ZZ-06 22 37334429 37334429 C T CSF2RB Missense_Mutation p.P860L 0.47 tolerated(0.15) benign(0.086) TCGA-FS-A1ZZ-06 22 37334430 37334430 C T CSF2RB Silent p.P860P 0.49 TCGA-FS-A1ZZ-06 22 37769772 37769772 G A ELFN2 Silent p.F601F 0.60 TCGA-FS-A1ZZ-06 22 37771307 37771307 C T ELFN2 Missense_Mutation p.E90K 0.62 tolerated(0.12) probably_damaging(0.993) TCGA-FS-A1ZZ-06 22 37967937 37967938 CC T LGALS2 Frame_Shift_Del p.G3Rfs*10 0.21 TCGA-FS-A1ZZ-06 22 38273863 38273863 C T EIF3L Silent p.F420F 0.51 TCGA-FS-A1ZZ-06 22 39439003 39439003 C T APOBEC3F Missense_Mutation p.L27F 0.44 deleterious(0.03) benign(0.329) TCGA-FS-A1ZZ-06 22 39497339 39497339 G A APOBEC3H Missense_Mutation p.S83N 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 22 40827451 40827451 G A MKL1 Missense_Mutation p.R33W 0.45 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 22 42166941 42166941 C T MEI1 Silent p.I840I 0.46 TCGA-FS-A1ZZ-06 22 42912127 42912127 G A RRP7A Missense_Mutation p.L78F 0.31 deleterious(0) possibly_damaging(0.529) TCGA-FS-A1ZZ-06 22 44022392 44022392 C T EFCAB6 Silent p.R800R 0.49 TCGA-FS-A1ZZ-06 22 44277535 44277535 C T PNPLA5 Missense_Mutation p.D368N 0.45 deleterious(0.01) benign(0.091) TCGA-FS-A1ZZ-06 22 44602346 44602346 C T PARVG 3'UTR 0.54 TCGA-FS-A1ZZ-06 22 45683288 45683288 C T UPK3A Silent p.F148F 0.50 TCGA-FS-A1ZZ-06 22 46726040 46726040 C T GTSE1 3'UTR 0.47 TCGA-FS-A1ZZ-06 22 50704915 50704915 A G MAPK11 Intron 0.50 TCGA-FS-A1ZZ-06 2 100903486 100903486 C T LONRF2 Missense_Mutation p.D654N 0.57 tolerated(0.47) possibly_damaging(0.845) TCGA-FS-A1ZZ-06 2 102835524 102835524 G A IL1RL2 Missense_Mutation p.R279Q 0.35 tolerated(0.08) possibly_damaging(0.519) TCGA-FS-A1ZZ-06 2 107459824 107459824 G A ST6GAL2 Silent p.L204L 0.62 TCGA-FS-A1ZZ-06 2 108881742 108881742 G A SULT1C3 Missense_Mutation p.E284K 0.45 tolerated(0.69) benign(0.003) TCGA-FS-A1ZZ-06 2 112620093 112620093 T A ANAPC1 Nonsense_Mutation p.K379* 0.18 TCGA-FS-A1ZZ-06 2 112777019 112777019 C T MERTK Silent p.F703F 0.52 TCGA-FS-A1ZZ-06 2 113089707 113089707 C T ZC3H6 Missense_Mutation p.S1071L 0.35 tolerated(0.14) benign(0.013) TCGA-FS-A1ZZ-06 2 113330160 113330160 C T POLR1B Missense_Mutation p.P699L 0.44 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 2 113675209 113675209 C T IL37 Intron 0.43 TCGA-FS-A1ZZ-06 2 113940135 113940135 G A PSD4 Silent p.R34R 0.55 TCGA-FS-A1ZZ-06 2 114258185 114258185 G A FOXD4L1 3'UTR 0.35 TCGA-FS-A1ZZ-06 2 116548899 116548899 T G DPP10 Missense_Mutation p.M560R 0.52 tolerated(0.14) benign(0.002) TCGA-FS-A1ZZ-06 2 119739064 119739064 C T MARCO Silent p.F282F 0.47 TCGA-FS-A1ZZ-06 2 120397388 120397388 G A PCDP1 Missense_Mutation p.S722N 0.39 tolerated(0.15) benign(0.015) TCGA-FS-A1ZZ-06 2 125555733 125555733 C T CNTNAP5 Missense_Mutation p.P1017L 0.53 tolerated(0.18) benign(0.049) TCGA-FS-A1ZZ-06 2 1263153 1263153 C T SNTG2 Silent p.F339F 0.46 TCGA-FS-A1ZZ-06 2 130877834 130877834 G A POTEF Silent p.D85D 0.14 TCGA-FS-A1ZZ-06 2 131688536 131688536 C T ARHGEF4 Silent p.P2P 0.60 TCGA-FS-A1ZZ-06 2 131976230 131976230 C T POTEE Silent p.D85D 0.40 TCGA-FS-A1ZZ-06 2 132020967 132020967 G A POTEE Missense_Mutation p.E647K 0.52 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-FS-A1ZZ-06 2 135738810 135738810 C T MAP3K19 Silent p.T1167T 0.45 TCGA-FS-A1ZZ-06 2 135744319 135744319 C T MAP3K19 Missense_Mutation p.R708K 0.44 tolerated(0.31) possibly_damaging(0.725) TCGA-FS-A1ZZ-06 2 136566641 136566641 C T LCT Silent p.R1092R 0.47 TCGA-FS-A1ZZ-06 2 137928483 137928483 G A THSD7B Silent p.L566L 0.40 TCGA-FS-A1ZZ-06 2 141083409 141083409 C T LRP1B Missense_Mutation p.A4088T 0.35 possibly_damaging(0.483) TCGA-FS-A1ZZ-06 2 141299464 141299464 C T LRP1B Missense_Mutation p.G2424E 0.42 probably_damaging(0.931) TCGA-FS-A1ZZ-06 2 141458014 141458014 G A LRP1B Missense_Mutation p.L2202F 0.40 possibly_damaging(0.587) TCGA-FS-A1ZZ-06 2 143685263 143685263 G A KYNU Nonsense_Mutation p.W109* 0.38 TCGA-FS-A1ZZ-06 2 150436117 150436117 G A MMADHC Missense_Mutation p.P67L 0.60 deleterious(0.03) probably_damaging(0.993) TCGA-FS-A1ZZ-06 2 152512466 152512466 C T NEB Silent p.V2189V 0.41 TCGA-FS-A1ZZ-06 2 15519910 15519910 G A NBAS Missense_Mutation p.H1136Y 0.43 tolerated(0.07) benign(0.317) TCGA-FS-A1ZZ-06 2 155307073 155307073 C T GALNT13 3'UTR 0.50 TCGA-FS-A1ZZ-06 2 160136445 160136445 A G WDSUB1 Missense_Mutation p.V137A 0.50 tolerated(0.25) probably_damaging(0.997) TCGA-FS-A1ZZ-06 2 165802238 165802238 C T SLC38A11 Splice_Site p.X21_splice 0.52 TCGA-FS-A1ZZ-06 2 166011151 166011151 C T SCN3A Silent p.G397G 0.44 TCGA-FS-A1ZZ-06 2 166245378 166245378 G A SCN2A Missense_Mutation p.E1688K 0.44 deleterious(0.04) benign(0.041) TCGA-FS-A1ZZ-06 2 166848847 166848847 G A SCN1A Silent p.I1646I 0.42 TCGA-FS-A1ZZ-06 2 166894574 166894574 G A SCN1A Silent p.S886S 0.40 TCGA-FS-A1ZZ-06 2 166929996 166929996 C T SCN1A Missense_Mutation p.E46K 0.42 tolerated(0.07) benign(0.225) TCGA-FS-A1ZZ-06 2 168074691 168074691 G A XIRP2 Missense_Mutation p.E247K 0.46 benign(0.027) TCGA-FS-A1ZZ-06 2 168105205 168105205 G A XIRP2 Missense_Mutation p.D2435N 0.47 benign(0.031) TCGA-FS-A1ZZ-06 2 168106510 168106510 C T XIRP2 Nonsense_Mutation p.Q2870* 0.44 TCGA-FS-A1ZZ-06 2 169938087 169938087 G A DHRS9 5'UTR 0.41 TCGA-FS-A1ZZ-06 2 169997050 169997050 C T LRP2 Missense_Mutation p.E4372K 0.51 possibly_damaging(0.591) TCGA-FS-A1ZZ-06 2 170127566 170127566 G A LRP2 Missense_Mutation p.P723L 0.46 probably_damaging(1) TCGA-FS-A1ZZ-06 2 170150722 170150722 G A LRP2 Silent p.I196I 0.49 TCGA-FS-A1ZZ-06 2 170460756 170460756 C T PPIG Missense_Mutation p.R41C 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 2 174085957 174085957 T A MLTK Intron 0.44 TCGA-FS-A1ZZ-06 2 175326182 175326182 C T GPR155 Missense_Mutation p.G503E 0.52 deleterious(0.01) probably_damaging(0.915) TCGA-FS-A1ZZ-06 2 175677155 175677155 C T CHN1 Silent p.K256K 0.39 TCGA-FS-A1ZZ-06 2 178990712 178990712 C T RBM45 Missense_Mutation p.R412C 0.30 deleterious(0.03) possibly_damaging(0.57) TCGA-FS-A1ZZ-06 2 179247909 179247909 G A OSBPL6 Missense_Mutation p.E619K 0.51 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 2 179393070 179393070 C T TTN Missense_Mutation p.G35770R 0.52 TCGA-FS-A1ZZ-06 2 179396937 179396937 T A TTN Missense_Mutation p.K34802I 0.38 TCGA-FS-A1ZZ-06 2 179400746 179400746 C T TTN Silent p.G33576G 0.48 TCGA-FS-A1ZZ-06 2 179404389 179404389 C T TTN Silent p.G32801G 0.47 TCGA-FS-A1ZZ-06 2 179408344 179408344 C T TTN Missense_Mutation p.R32119K 0.41 TCGA-FS-A1ZZ-06 2 179411970 179411970 G A TTN Missense_Mutation p.R31428C 0.44 TCGA-FS-A1ZZ-06 2 179413538 179413538 C T TTN Missense_Mutation p.A30939T 0.55 TCGA-FS-A1ZZ-06 2 179449136 179449136 G A TTN Silent p.V21714V 0.39 TCGA-FS-A1ZZ-06 2 179459340 179459340 T A TTN Missense_Mutation p.K19294I 0.45 TCGA-FS-A1ZZ-06 2 179478624 179478624 G A TTN Silent p.I16462I 0.39 TCGA-FS-A1ZZ-06 2 179537423 179537423 C T TTN Silent p.K11598K 0.42 TCGA-FS-A1ZZ-06 2 179554265 179554265 C T TTN Missense_Mutation p.R10635K 0.38 TCGA-FS-A1ZZ-06 2 179585251 179585251 C T TTN Silent p.K7746K 0.57 TCGA-FS-A1ZZ-06 2 179588019 179588019 G A TTN Missense_Mutation p.H7239Y 0.39 TCGA-FS-A1ZZ-06 2 179606092 179606092 G A TTN Silent p.I3956I 0.47 TCGA-FS-A1ZZ-06 2 179611041 179611041 C T TTN Intron 0.51 TCGA-FS-A1ZZ-06 2 179648923 179648923 G A TTN Silent p.F883F 0.39 TCGA-FS-A1ZZ-06 2 179658259 179658259 C T TTN Missense_Mutation p.E470K 0.51 TCGA-FS-A1ZZ-06 2 179732790 179732790 G A CCDC141 Missense_Mutation p.S846F 0.53 deleterious(0.01) probably_damaging(0.914) TCGA-FS-A1ZZ-06 2 179742603 179742603 T A CCDC141 Intron 0.57 TCGA-FS-A1ZZ-06 2 183066172 183066172 G A PDE1A Silent p.F389F 0.46 TCGA-FS-A1ZZ-06 2 185801744 185801744 A T ZNF804A Missense_Mutation p.N541Y 0.47 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZZ-06 2 186678426 186678426 G A FSIP2 Missense_Mutation p.R6750Q 0.35 benign(0.067) TCGA-FS-A1ZZ-06 2 188361661 188361661 C T TFPI Missense_Mutation p.G89E 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 2 191897687 191897687 C T STAT4 Missense_Mutation p.E681K 0.42 tolerated(0.19) benign(0.142) TCGA-FS-A1ZZ-06 2 1926650 1926650 C T MYT1L Missense_Mutation p.M297I 0.48 tolerated_low_confidence(0.47) benign(0.003) TCGA-FS-A1ZZ-06 2 192815113 192815113 C T TMEFF2 Missense_Mutation p.R350K 0.54 deleterious(0) benign(0.185) TCGA-FS-A1ZZ-06 2 196722110 196722110 G A DNAH7 Missense_Mutation p.S2802L 0.49 tolerated(0.07) benign(0.209) TCGA-FS-A1ZZ-06 2 196738347 196738347 C T DNAH7 Missense_Mutation p.D2120N 0.40 deleterious(0.04) benign(0.118) TCGA-FS-A1ZZ-06 2 196746611 196746611 G A DNAH7 Nonsense_Mutation p.R1957* 0.34 TCGA-FS-A1ZZ-06 2 197086952 197086952 C T HECW2 Missense_Mutation p.E1377K 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZZ-06 2 197583330 197583330 C T CCDC150 Missense_Mutation p.A657V 0.39 tolerated(0.11) benign(0.238) TCGA-FS-A1ZZ-06 2 198570890 198570890 C T MARS2 Missense_Mutation p.S254F 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 2 198640447 198640447 A G BOLL Silent p.Y110Y 0.42 TCGA-FS-A1ZZ-06 2 200213545 200213545 G A SATB2 Missense_Mutation p.P351L 0.39 deleterious(0) benign(0.013) TCGA-FS-A1ZZ-06 2 204594400 204594400 C T CD28 Missense_Mutation p.P147S 0.47 tolerated(0.19) benign(0.014) TCGA-FS-A1ZZ-06 2 207527702 207527702 C T DYTN Missense_Mutation p.D520N 0.46 tolerated(0.19) benign(0.016) TCGA-FS-A1ZZ-06 2 207611011 207611011 C T MDH1B Silent p.Q452Q 0.36 TCGA-FS-A1ZZ-06 2 209214792 209214792 C T PIKFYVE Missense_Mutation p.P1807S 0.49 deleterious(0.05) possibly_damaging(0.833) TCGA-FS-A1ZZ-06 2 209302345 209302345 C T PTH2R Missense_Mutation p.P88S 0.43 tolerated(0.48) benign(0.005) TCGA-FS-A1ZZ-06 2 211456679 211456679 G A CPS1 Missense_Mutation p.D364N 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 2 21228558 21228558 C T APOB Missense_Mutation p.D3728N 0.46 benign(0.102) TCGA-FS-A1ZZ-06 2 21236264 21236264 G A APOB Silent p.F1328F 0.43 TCGA-FS-A1ZZ-06 2 214204952 214204952 G A SPAG16 Missense_Mutation p.R201Q 0.48 deleterious(0.01) benign(0.371) TCGA-FS-A1ZZ-06 2 215278865 215278865 G A VWC2L 5'UTR 0.38 TCGA-FS-A1ZZ-06 2 219000367 219000367 G A CXCR2 Silent p.V281V 0.39 TCGA-FS-A1ZZ-06 2 219000488 219000488 C T CXCR2 Missense_Mutation p.R322C 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZZ-06 2 219000729 219000729 G A CXCR2 3'UTR 0.64 TCGA-FS-A1ZZ-06 2 219028987 219028987 G A CXCR1 Silent p.F316F 0.47 TCGA-FS-A1ZZ-06 2 219130319 219130319 G A AAMP Silent p.S322S 0.34 TCGA-FS-A1ZZ-06 2 219903137 219903137 C T CCDC108 Missense_Mutation p.S106N 0.37 tolerated_low_confidence(0.08) probably_damaging(0.936) TCGA-FS-A1ZZ-06 2 220354402 220354402 C T SPEG Missense_Mutation p.P2888S 0.49 benign(0.004) TCGA-FS-A1ZZ-06 2 224462720 224462720 T G SCG2 Silent p.L427L 0.49 TCGA-FS-A1ZZ-06 2 224463493 224463493 A G SCG2 Missense_Mutation p.Y170H 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-FS-A1ZZ-06 2 224866633 224866633 G A SERPINE2 Silent p.S7S 0.57 TCGA-FS-A1ZZ-06 2 226446677 226446677 C T NYAP2 Missense_Mutation p.H182Y 0.42 tolerated(0.1) benign(0.38) TCGA-FS-A1ZZ-06 2 227915872 227915872 C T COL4A4 Missense_Mutation p.D991N 0.45 unknown(0) TCGA-FS-A1ZZ-06 2 228135599 228135599 G A COL4A3 Silent p.G563G 0.34 TCGA-FS-A1ZZ-06 2 228884573 228884573 C T SPHKAP Missense_Mutation p.E333K 0.35 tolerated(0.11) benign(0.019) TCGA-FS-A1ZZ-06 2 230911037 230911037 C T SLC16A14 Missense_Mutation p.D269N 0.44 tolerated(0.49) benign(0.111) TCGA-FS-A1ZZ-06 2 231036436 231036436 G A SP110 Silent p.S621S 0.56 TCGA-FS-A1ZZ-06 2 231663564 231663564 C T CAB39 Silent p.V173V 0.47 TCGA-FS-A1ZZ-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.43 TCGA-FS-A1ZZ-06 2 234247329 234247329 G A SAG Missense_Mutation p.E318K 0.41 tolerated(0.06) benign(0.382) TCGA-FS-A1ZZ-06 2 234891807 234891807 C T TRPM8 Silent p.F900F 0.49 TCGA-FS-A1ZZ-06 2 234959421 234959421 G A SPP2 5'UTR 0.42 TCGA-FS-A1ZZ-06 2 26203482 26203482 C T KIF3C Silent p.E435E 0.46 TCGA-FS-A1ZZ-06 2 26691317 26691317 C T OTOF Missense_Mutation p.G1350E 0.44 tolerated(0.32) benign(0.027) TCGA-FS-A1ZZ-06 2 26802166 26802166 C T C2orf70 Missense_Mutation p.P156S 0.33 tolerated(0.09) benign(0.232) TCGA-FS-A1ZZ-06 2 27324299 27324299 C T CGREF1 Missense_Mutation p.G267E 0.38 tolerated_low_confidence(0.87) unknown(0) TCGA-FS-A1ZZ-06 2 27324350 27324350 C T CGREF1 Missense_Mutation p.G250E 0.36 tolerated(0.09) benign(0.28) TCGA-FS-A1ZZ-06 2 27352206 27352206 G A ABHD1 Missense_Mutation p.G161S 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 2 27360137 27360137 G A C2orf53 Missense_Mutation p.P354L 0.51 tolerated(0.8) benign(0.004) TCGA-FS-A1ZZ-06 2 27427440 27427440 G A SLC5A6 Silent p.F298F 0.44 TCGA-FS-A1ZZ-06 2 29295609 29295609 C T C2orf71 Missense_Mutation p.E507K 0.44 tolerated(0.71) benign(0.015) TCGA-FS-A1ZZ-06 2 31147002 31147002 C T GALNT14 Missense_Mutation p.E460K 0.48 tolerated(0.75) benign(0.005) TCGA-FS-A1ZZ-06 2 32323885 32323885 C T SPAST Missense_Mutation p.P203S 0.41 tolerated(0.42) benign(0.01) TCGA-FS-A1ZZ-06 2 33500955 33500955 G A LTBP1 Missense_Mutation p.S986N 0.43 tolerated(0.18) benign(0.049) TCGA-FS-A1ZZ-06 2 37085036 37085036 C T STRN Silent p.E600E 0.46 TCGA-FS-A1ZZ-06 2 37111159 37111159 G A STRN Missense_Mutation p.P368S 0.34 tolerated(0.19) benign(0.009) TCGA-FS-A1ZZ-06 2 38179109 38179109 C T RMDN2 Missense_Mutation p.P251S 0.42 tolerated(0.42) probably_damaging(0.932) TCGA-FS-A1ZZ-06 2 44021977 44021977 C T DYNC2LI1 Intron 0.39 TCGA-FS-A1ZZ-06 2 50282132 50282132 G A NRXN1 Nonsense_Mutation p.R1297* 0.43 TCGA-FS-A1ZZ-06 2 54161830 54161830 G A PSME4 Missense_Mutation p.P290L 0.42 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZZ-06 2 64208941 64208941 G A VPS54 Missense_Mutation p.L73F 0.47 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZZ-06 2 65296935 65296935 G A CEP68 Silent p.Q119Q 0.38 TCGA-FS-A1ZZ-06 2 65540614 65540614 G A SPRED2 3'UTR 0.28 TCGA-FS-A1ZZ-06 2 68621295 68621295 G A PLEK Silent p.E301E 0.42 TCGA-FS-A1ZZ-06 2 68882234 68882234 C T PROKR1 Silent p.I236I 0.49 TCGA-FS-A1ZZ-06 2 70037755 70037755 C T ANXA4 Missense_Mutation p.R143C 0.42 tolerated(0.11) benign(0) TCGA-FS-A1ZZ-06 2 70923465 70923465 C T ADD2 Missense_Mutation p.G129E 0.56 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 2 71046974 71046974 G A CLEC4F Silent p.L37L 0.49 TCGA-FS-A1ZZ-06 2 71062644 71062644 G A CD207 Silent p.S56S 0.57 TCGA-FS-A1ZZ-06 2 71216111 71216111 G A TEX261 Missense_Mutation p.P137S 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 2 74719542 74719542 C T TTC31 Silent p.F377F 0.52 TCGA-FS-A1ZZ-06 2 75101507 75101507 C T HK2 Missense_Mutation p.S269L 0.56 tolerated(0.05) benign(0.004) TCGA-FS-A1ZZ-06 2 79348011 79348011 C T REG1A Silent p.F8F 0.54 TCGA-FS-A1ZZ-06 2 79384251 79384251 G A REG3A 3'UTR 0.52 TCGA-FS-A1ZZ-06 2 79384252 79384252 G A REG3A 3'UTR 0.52 TCGA-FS-A1ZZ-06 2 80085165 80085165 G A CTNNA2 Missense_Mutation p.E109K 0.48 tolerated(0.05) benign(0.272) TCGA-FS-A1ZZ-06 2 88829003 88829003 A T TEX37 3'UTR 0.39 TCGA-FS-A1ZZ-06 2 96809649 96809649 G A DUSP2 Silent p.F286F 0.54 TCGA-FS-A1ZZ-06 2 96809694 96809694 G A DUSP2 Silent p.Y271Y 0.35 TCGA-FS-A1ZZ-06 2 99013074 99013074 C T CNGA3 Missense_Mutation p.R481C 0.37 deleterious(0.02) probably_damaging(0.917) TCGA-FS-A1ZZ-06 2 99860512 99860512 T C LYG2 Missense_Mutation p.K157R 0.33 deleterious(0.03) probably_damaging(0.956) TCGA-FS-A1ZZ-06 3 100438853 100438853 C T TFG Silent p.D73D 0.33 TCGA-FS-A1ZZ-06 3 101384430 101384430 C T ZBTB11 Missense_Mutation p.R334Q 0.43 tolerated(0.16) benign(0) TCGA-FS-A1ZZ-06 3 101540558 101540558 C T NXPE3 Silent p.V480V 0.41 TCGA-FS-A1ZZ-06 3 10157502 10157502 C T BRK1 Silent p.F39F 0.55 TCGA-FS-A1ZZ-06 3 10391874 10391874 C T ATP2B2 Missense_Mutation p.E776K 0.45 tolerated(0.07) possibly_damaging(0.676) TCGA-FS-A1ZZ-06 3 108159925 108159925 G A MYH15 Silent p.I966I 0.48 TCGA-FS-A1ZZ-06 3 108182015 108182015 T G MYH15 Missense_Mutation p.K623Q 0.41 deleterious(0.01) possibly_damaging(0.756) TCGA-FS-A1ZZ-06 3 108572665 108572665 C T TRAT1 Missense_Mutation p.H168Y 0.45 deleterious(0) probably_damaging(0.923) TCGA-FS-A1ZZ-06 3 108626922 108626922 C T GUCA1C Missense_Mutation p.D193N 0.43 tolerated(0.49) benign(0.051) TCGA-FS-A1ZZ-06 3 108672674 108672674 C T GUCA1C 5'UTR 0.39 TCGA-FS-A1ZZ-06 3 111842254 111842254 C T GCSAM 3'UTR 0.49 TCGA-FS-A1ZZ-06 3 115805321 115805321 G A LSAMP Silent p.L80L 0.44 TCGA-FS-A1ZZ-06 3 120673784 120673784 C T STXBP5L Intron 0.42 TCGA-FS-A1ZZ-06 3 120973774 120973774 T G STXBP5L Missense_Mutation p.S492A 0.71 tolerated(1) benign(0.314) TCGA-FS-A1ZZ-06 3 121341303 121341303 G A FBXO40 Missense_Mutation p.E343K 0.51 tolerated(0.16) benign(0.305) TCGA-FS-A1ZZ-06 3 121350950 121350950 C T HCLS1 Missense_Mutation p.G441E 0.32 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZZ-06 3 121353216 121353216 C T HCLS1 Silent p.E247E 0.47 TCGA-FS-A1ZZ-06 3 121774344 121774344 C T CD86 Missense_Mutation p.P3L 0.36 tolerated_low_confidence(1) benign(0.002) TCGA-FS-A1ZZ-06 3 12183413 12183413 T A SYN2 RNA 0.46 TCGA-FS-A1ZZ-06 3 12195141 12195141 C T TIMP4 Silent p.L183L 0.46 TCGA-FS-A1ZZ-06 3 122002959 122002959 G A CASR Missense_Mutation p.G730R 0.59 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 3 122002961 122002961 G A CASR Silent p.G730G 0.59 TCGA-FS-A1ZZ-06 3 122004086 122004086 G A CASR 3'UTR 0.43 TCGA-FS-A1ZZ-06 3 123512533 123512533 G A MYLK Silent p.F52F 0.47 TCGA-FS-A1ZZ-06 3 124215215 124215215 C T KALRN Silent p.I1628I 0.46 TCGA-FS-A1ZZ-06 3 124538681 124538681 C A ITGB5 Missense_Mutation p.D315Y 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 124538682 124538682 C T ITGB5 Splice_Site p.X315_splice 0.35 TCGA-FS-A1ZZ-06 3 124731478 124731478 G T HEG1 Missense_Mutation p.S982Y 0.62 deleterious(0.02) possibly_damaging(0.736) TCGA-FS-A1ZZ-06 3 124731581 124731581 G A HEG1 Missense_Mutation p.P948S 0.67 tolerated(0.06) possibly_damaging(0.651) TCGA-FS-A1ZZ-06 3 126153205 126153205 G A CCDC37 Missense_Mutation p.E537K 0.38 tolerated(0.22) possibly_damaging(0.687) TCGA-FS-A1ZZ-06 3 126291117 126291117 A T TXNRD3NB Silent p.L90L 0.41 TCGA-FS-A1ZZ-06 3 126916203 126916203 C T C3orf56 Silent p.S225S 0.46 TCGA-FS-A1ZZ-06 3 129251558 129251558 C T RHO Silent p.F293F 0.46 TCGA-FS-A1ZZ-06 3 129389208 129389208 G A TMCC1 Silent p.S492S 0.40 TCGA-FS-A1ZZ-06 3 130282324 130282324 G A COL6A6 Silent p.V159V 0.33 TCGA-FS-A1ZZ-06 3 130283963 130283963 G A COL6A6 Missense_Mutation p.E263K 0.42 tolerated(0.3) probably_damaging(0.998) TCGA-FS-A1ZZ-06 3 13363284 13363284 T G NUP210 Missense_Mutation p.K1656T 0.50 deleterious(0.04) benign(0.052) TCGA-FS-A1ZZ-06 3 136035827 136035827 C T PCCB Silent p.A357A 0.46 TCGA-FS-A1ZZ-06 3 137717827 137717827 C T CLDN18 Silent p.P39P 0.31 TCGA-FS-A1ZZ-06 3 138023805 138023805 C T NME9 Missense_Mutation p.R173K 0.43 tolerated(1) benign(0.003) TCGA-FS-A1ZZ-06 3 138170893 138170893 C T ESYT3 Missense_Mutation p.H111Y 0.47 deleterious(0.02) possibly_damaging(0.899) TCGA-FS-A1ZZ-06 3 138669293 138669293 G A C3orf72 Missense_Mutation p.R136Q 0.37 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-FS-A1ZZ-06 3 138762818 138762818 G A PRR23C Silent p.F215F 0.50 TCGA-FS-A1ZZ-06 3 141535598 141535598 G A GRK7 Silent p.T456T 0.40 TCGA-FS-A1ZZ-06 3 148577804 148577804 G A CPB1 3'UTR 0.48 TCGA-FS-A1ZZ-06 3 14939498 14939498 G A FGD5 Missense_Mutation p.D988N 0.48 tolerated(0.66) benign(0.144) TCGA-FS-A1ZZ-06 3 14949198 14949198 G A FGD5 Missense_Mutation p.D1106N 0.30 tolerated(0.29) probably_damaging(0.993) TCGA-FS-A1ZZ-06 3 150876497 150876497 G A MED12L Missense_Mutation p.E250K 0.32 deleterious(0) probably_damaging(0.988) TCGA-FS-A1ZZ-06 3 150877703 150877703 G A MED12L Missense_Mutation p.D308N 0.42 tolerated(0.32) probably_damaging(0.91) TCGA-FS-A1ZZ-06 3 151154763 151154763 C T IGSF10 Missense_Mutation p.R2529Q 0.48 deleterious(0.02) possibly_damaging(0.863) TCGA-FS-A1ZZ-06 3 151599324 151599324 C A SUCNR1 Missense_Mutation p.F331L 0.39 tolerated_low_confidence(1) benign(0.089) TCGA-FS-A1ZZ-06 3 155560404 155560404 G A SLC33A1 Silent p.F260F 0.31 TCGA-FS-A1ZZ-06 3 156183475 156183475 G A KCNAB1 Missense_Mutation p.G191R 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 158415463 158415463 C T RARRES1 3'UTR 0.46 TCGA-FS-A1ZZ-06 3 159609905 159609905 C T IQCJ-SCHIP1 Silent p.V522V 0.47 TCGA-FS-A1ZZ-06 3 160804493 160804493 G A B3GALNT1 Missense_Mutation p.S17F 0.47 tolerated(0.7) possibly_damaging(0.831) TCGA-FS-A1ZZ-06 3 16450977 16450977 C T RFTN1 Missense_Mutation p.D116N 0.39 deleterious(0.01) probably_damaging(0.937) TCGA-FS-A1ZZ-06 3 164780273 164780273 T C SI Splice_Site p.X303_splice 0.34 TCGA-FS-A1ZZ-06 3 164905637 164905637 C T SLITRK3 3'UTR 0.21 TCGA-FS-A1ZZ-06 3 167217983 167217983 C T WDR49 Missense_Mutation p.E645K 0.45 tolerated(0.1) benign(0.016) TCGA-FS-A1ZZ-06 3 168819869 168819869 C T MECOM Missense_Mutation p.G794E 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 168833244 168833244 C T MECOM Missense_Mutation p.E683K 0.54 tolerated(0.19) benign(0.207) TCGA-FS-A1ZZ-06 3 169540261 169540261 C T LRRIQ4 Silent p.L184L 0.47 TCGA-FS-A1ZZ-06 3 169639115 169639115 G A SAMD7 Missense_Mutation p.R67Q 0.49 deleterious(0.05) benign(0.208) TCGA-FS-A1ZZ-06 3 169639116 169639116 G A SAMD7 Silent p.R67R 0.47 TCGA-FS-A1ZZ-06 3 169854299 169854299 G A PHC3 Missense_Mutation p.P276L 0.51 tolerated(0.2) possibly_damaging(0.763) TCGA-FS-A1ZZ-06 3 170244485 170244485 C T SLC7A14 Missense_Mutation p.E81K 0.31 tolerated(0.53) benign(0.048) TCGA-FS-A1ZZ-06 3 17053137 17053137 C T PLCL2 Missense_Mutation p.P641S 0.67 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 17056385 17056385 C T PLCL2 Silent p.I874I 0.41 TCGA-FS-A1ZZ-06 3 170625451 170625451 C G EIF5A2 Missense_Mutation p.G49R 0.47 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 3 172165940 172165940 G A GHSR Silent p.S88S 0.40 TCGA-FS-A1ZZ-06 3 179051528 179051528 C T ZNF639 Missense_Mutation p.P259L 0.45 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 3 179096428 179096428 C T MFN1 Silent p.I496I 0.56 TCGA-FS-A1ZZ-06 3 180349328 180349328 C T CCDC39 Missense_Mutation p.E643K 0.43 deleterious(0.02) probably_damaging(0.982) TCGA-FS-A1ZZ-06 3 182871954 182871954 T A LAMP3 Missense_Mutation p.K92I 0.42 tolerated(0.08) benign(0.169) TCGA-FS-A1ZZ-06 3 183435492 183435492 C T YEATS2 Missense_Mutation p.L52F 0.45 deleterious(0) benign(0.243) TCGA-FS-A1ZZ-06 3 18390985 18390985 C T SATB1 Missense_Mutation p.G689R 0.53 tolerated(0.08) probably_damaging(0.987) TCGA-FS-A1ZZ-06 3 18427891 18427891 C T SATB1 Silent p.Q473Q 0.39 TCGA-FS-A1ZZ-06 3 186395524 186395524 T G HRG Missense_Mutation p.F477C 0.39 deleterious(0) probably_damaging(0.987) TCGA-FS-A1ZZ-06 3 186953993 186953993 G A MASP1 Silent p.L556L 0.53 TCGA-FS-A1ZZ-06 3 189526072 189526072 G A TP63 Silent p.T112T 0.41 TCGA-FS-A1ZZ-06 3 189586378 189586378 C T TP63 Silent p.V334V 0.35 TCGA-FS-A1ZZ-06 3 189612184 189612184 C G TP63 Missense_Mutation p.L646V 0.42 tolerated(1) probably_damaging(0.978) TCGA-FS-A1ZZ-06 3 189612186 189612186 C T TP63 Silent p.L646L 0.42 TCGA-FS-A1ZZ-06 3 191179053 191179053 C T PYDC2 Silent p.S34S 0.36 TCGA-FS-A1ZZ-06 3 191861717 191861717 G A FGF12 3'UTR 0.41 TCGA-FS-A1ZZ-06 3 194063279 194063279 C T CPN2 Silent p.T51T 0.31 TCGA-FS-A1ZZ-06 3 196388621 196388621 C T NRROS 3'UTR 0.39 TCGA-FS-A1ZZ-06 3 196675001 196675001 C T PIGZ Missense_Mutation p.R256Q 0.59 tolerated(0.52) benign(0.007) TCGA-FS-A1ZZ-06 3 26751195 26751195 C T LRRC3B Missense_Mutation p.S11F 0.45 deleterious(0.01) possibly_damaging(0.888) TCGA-FS-A1ZZ-06 3 26751401 26751401 C T LRRC3B Missense_Mutation p.P80S 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 32932587 32932587 C T TRIM71 Nonsense_Mutation p.Q631* 0.38 TCGA-FS-A1ZZ-06 3 36759603 36759603 G A DCLK3 Missense_Mutation p.P551S 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 3 36778708 36778708 T A DCLK3 Missense_Mutation p.E481D 0.58 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 3 36778957 36778957 C T DCLK3 Missense_Mutation p.M398I 0.38 tolerated(0.2) benign(0.026) TCGA-FS-A1ZZ-06 3 36872803 36872803 C T TRANK1 Silent p.G2713G 0.50 TCGA-FS-A1ZZ-06 3 38049241 38049241 G A PLCD1 3'UTR 0.50 TCGA-FS-A1ZZ-06 3 38049305 38049305 G A PLCD1 Missense_Mutation p.P765S 0.38 tolerated(0.75) benign(0.014) TCGA-FS-A1ZZ-06 3 38051222 38051222 G A PLCD1 Silent p.A477A 0.55 TCGA-FS-A1ZZ-06 3 38355425 38355425 C T SLC22A14 Silent p.L457L 0.57 TCGA-FS-A1ZZ-06 3 38355426 38355426 C T SLC22A14 Missense_Mutation p.P458S 0.56 tolerated(0.09) possibly_damaging(0.581) TCGA-FS-A1ZZ-06 3 38592955 38592955 C T SCN5A Silent p.L1636L 0.48 TCGA-FS-A1ZZ-06 3 38674559 38674559 C T SCN5A Silent p.L80L 0.40 TCGA-FS-A1ZZ-06 3 38921480 38921480 G A SCN11A Silent p.F1118F 0.37 TCGA-FS-A1ZZ-06 3 39093506 39093506 C T WDR48 5'UTR 0.40 TCGA-FS-A1ZZ-06 3 391158 391158 G A CHL1 Missense_Mutation p.G322E 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 39226238 39226238 C T XIRP1 Missense_Mutation p.E1567K 0.38 deleterious(0) benign(0.417) TCGA-FS-A1ZZ-06 3 39374688 39374688 C T CCR8 Missense_Mutation p.S289F 0.57 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 3 39449165 39449165 C T RPSA Silent p.V7V 0.35 TCGA-FS-A1ZZ-06 3 39449166 39449166 C T RPSA Silent p.L8L 0.35 TCGA-FS-A1ZZ-06 3 40231918 40231918 C T MYRIP Silent p.S543S 0.34 TCGA-FS-A1ZZ-06 3 44685209 44685209 G A ZNF197 Missense_Mutation p.E863K 0.53 tolerated(0.7) benign(0.004) TCGA-FS-A1ZZ-06 3 44763128 44763128 G C ZNF502 Silent p.G273G 0.41 TCGA-FS-A1ZZ-06 3 44763129 44763129 A G ZNF502 Missense_Mutation p.K274E 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 3 44856487 44856487 C T KIF15 Missense_Mutation p.S823L 0.51 tolerated(0.22) benign(0.002) TCGA-FS-A1ZZ-06 3 45077305 45077305 T A CLEC3B Missense_Mutation p.D166E 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZZ-06 3 47049159 47049159 G A NBEAL2 Silent p.K2493K 0.50 TCGA-FS-A1ZZ-06 3 47371567 47371567 C T KLHL18 Silent p.F176F 0.49 TCGA-FS-A1ZZ-06 3 47385374 47385374 C T KLHL18 Silent p.P556P 0.47 TCGA-FS-A1ZZ-06 3 48414159 48414159 G A FBXW12 Intron 0.35 TCGA-FS-A1ZZ-06 3 4856858 4856858 A G ITPR1 Missense_Mutation p.K2593R 0.38 tolerated(0.06) probably_damaging(0.993) TCGA-FS-A1ZZ-06 3 48607608 48607608 C T COL7A1 Missense_Mutation p.E2482K 0.42 probably_damaging(0.998) TCGA-FS-A1ZZ-06 3 48668507 48668507 G A SLC26A6 Silent p.I351I 0.43 TCGA-FS-A1ZZ-06 3 48691118 48691118 C T CELSR3 Silent p.R1794R 0.53 TCGA-FS-A1ZZ-06 3 49162711 49162711 G A LAMB2 Missense_Mutation p.H899Y 0.40 tolerated(0.35) benign(0.021) TCGA-FS-A1ZZ-06 3 49662657 49662657 C T BSN Silent p.V158V 0.46 TCGA-FS-A1ZZ-06 3 51251646 51251646 G A DOCK3 Missense_Mutation p.R407K 0.52 tolerated(0.18) benign(0.338) TCGA-FS-A1ZZ-06 3 51266125 51266125 C T DOCK3 Silent p.L561L 0.49 TCGA-FS-A1ZZ-06 3 52326770 52326770 C T GLYCTK Silent p.G400G 0.52 TCGA-FS-A1ZZ-06 3 52457355 52457355 C T PHF7 3'UTR 0.58 TCGA-FS-A1ZZ-06 3 52475367 52475367 C T SEMA3G Silent p.K242K 0.26 TCGA-FS-A1ZZ-06 3 52537381 52537381 C T STAB1 Missense_Mutation p.S239L 0.52 deleterious(0.01) possibly_damaging(0.461) TCGA-FS-A1ZZ-06 3 52551991 52551991 G A STAB1 Missense_Mutation p.G1578D 0.40 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 3 52816039 52816039 G A ITIH1 Silent p.K257K 0.37 TCGA-FS-A1ZZ-06 3 52825909 52825909 C T ITIH1 Silent p.I906I 0.29 TCGA-FS-A1ZZ-06 3 53217545 53217545 C T PRKCD Silent p.D245D 0.42 TCGA-FS-A1ZZ-06 3 53783436 53783436 C T CACNA1D Silent p.I1172I 0.40 TCGA-FS-A1ZZ-06 3 53844187 53844187 C T CACNA1D Silent p.S2038S 0.43 TCGA-FS-A1ZZ-06 3 54661835 54661835 A C CACNA2D3 Missense_Mutation p.K329Q 0.50 tolerated(0.06) probably_damaging(0.954) TCGA-FS-A1ZZ-06 3 57138405 57138405 G A IL17RD Missense_Mutation p.L260F 0.44 tolerated(0.08) possibly_damaging(0.894) TCGA-FS-A1ZZ-06 3 57232439 57232439 G A HESX1 Silent p.L147L 0.54 TCGA-FS-A1ZZ-06 3 69990452 69990452 G C MITF Missense_Mutation p.L244F 0.40 tolerated(0.24) possibly_damaging(0.52) TCGA-FS-A1ZZ-06 3 87017746 87017746 C T VGLL3 Missense_Mutation p.D311N 0.49 deleterious(0.03) benign(0.287) TCGA-FS-A1ZZ-06 3 96706553 96706553 G A EPHA6 Missense_Mutation p.G277E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 3 96963191 96963191 C T EPHA6 Intron 0.40 TCGA-FS-A1ZZ-06 3 97356795 97356795 G A EPHA6 Missense_Mutation p.D885N 0.47 tolerated(0.1) probably_damaging(0.957) TCGA-FS-A1ZZ-06 3 9754705 9754705 C T CPNE9 Missense_Mutation p.P198S 0.40 deleterious(0.02) probably_damaging(0.91) TCGA-FS-A1ZZ-06 3 9948474 9948474 C T IL17RE Missense_Mutation p.R151C 0.36 deleterious(0) possibly_damaging(0.808) TCGA-FS-A1ZZ-06 4 100052668 100052668 C T ADH4 Missense_Mutation p.G277E 0.42 tolerated(0.08) probably_damaging(0.951) TCGA-FS-A1ZZ-06 4 100207949 100207949 C T ADH1A Intron 0.48 TCGA-FS-A1ZZ-06 4 100232728 100232728 T C ADH1B Missense_Mutation p.N305S 0.42 tolerated(0.61) benign(0.002) TCGA-FS-A1ZZ-06 4 100529971 100529971 G A MTTP Missense_Mutation p.E536K 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-FS-A1ZZ-06 4 103236961 103236961 G A SLC39A8 Silent p.S82S 0.54 TCGA-FS-A1ZZ-06 4 103534712 103534712 C T NFKB1 Missense_Mutation p.S908L 0.50 tolerated_low_confidence(0.12) benign(0.005) TCGA-FS-A1ZZ-06 4 104577402 104577402 G A TACR3 Silent p.I279I 0.46 TCGA-FS-A1ZZ-06 4 104640528 104640528 C T TACR3 Missense_Mutation p.G102E 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 110925679 110925679 G A EGF Silent p.S1064S 0.42 TCGA-FS-A1ZZ-06 4 110972566 110972566 G A ELOVL6 Silent p.Y242Y 0.41 TCGA-FS-A1ZZ-06 4 113352475 113352475 C T ALPK1 Missense_Mutation p.S591F 0.49 tolerated(0.57) possibly_damaging(0.59) TCGA-FS-A1ZZ-06 4 120214417 120214417 C T USP53 3'UTR 0.54 TCGA-FS-A1ZZ-06 4 122846350 122846350 C T TRPC3 Silent p.R333R 0.43 TCGA-FS-A1ZZ-06 4 126412606 126412606 G A FAT4 Missense_Mutation p.D4877N 0.47 probably_damaging(0.995) TCGA-FS-A1ZZ-06 4 13601364 13601364 G A BOD1L1 Missense_Mutation p.P2387L 0.46 probably_damaging(0.92) TCGA-FS-A1ZZ-06 4 138451272 138451272 G A PCDH18 Silent p.I657I 0.39 TCGA-FS-A1ZZ-06 4 138451460 138451460 C T PCDH18 Missense_Mutation p.E595K 0.46 tolerated(0.17) benign(0.297) TCGA-FS-A1ZZ-06 4 146686844 146686844 G A ZNF827 Silent p.S969S 0.46 TCGA-FS-A1ZZ-06 4 15063816 15063816 C T CPEB2 Nonsense_Mutation p.Q937* 0.44 TCGA-FS-A1ZZ-06 4 151247031 151247031 C T LRBA Missense_Mutation p.R2472Q 0.42 tolerated(0.56) possibly_damaging(0.625) TCGA-FS-A1ZZ-06 4 154624805 154624805 C T TLR2 Missense_Mutation p.S249L 0.48 tolerated(0.32) benign(0.017) TCGA-FS-A1ZZ-06 4 15518298 15518298 C T CC2D2A Silent p.P356P 0.25 TCGA-FS-A1ZZ-06 4 155461949 155461949 G A PLRG1 Silent p.L275L 0.55 TCGA-FS-A1ZZ-06 4 155509998 155509998 G A FGA Missense_Mutation p.S104L 0.46 tolerated(0.17) possibly_damaging(0.546) TCGA-FS-A1ZZ-06 4 156618034 156618034 G A GUCY1A3 Silent p.K5K 0.43 TCGA-FS-A1ZZ-06 4 157771443 157771443 C T PDGFC Missense_Mutation p.E82K 0.45 deleterious(0.05) possibly_damaging(0.747) TCGA-FS-A1ZZ-06 4 158060056 158060056 G A GLRB Missense_Mutation p.E236K 0.40 deleterious(0.02) benign(0.185) TCGA-FS-A1ZZ-06 4 166915560 166915560 G A TLL1 Missense_Mutation p.G130E 0.55 tolerated(0.44) benign(0.001) TCGA-FS-A1ZZ-06 4 166916232 166916232 C T TLL1 Silent p.F178F 0.48 TCGA-FS-A1ZZ-06 4 166929157 166929157 G A TLL1 Missense_Mutation p.D292N 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZZ-06 4 167655994 167655994 G A SPOCK3 3'UTR 0.36 TCGA-FS-A1ZZ-06 4 167675767 167675767 G A SPOCK3 Missense_Mutation p.L278F 0.47 deleterious(0.02) possibly_damaging(0.876) TCGA-FS-A1ZZ-06 4 175413236 175413236 C T HPGD Silent p.L224L 0.42 TCGA-FS-A1ZZ-06 4 175898264 175898264 C T ADAM29 Missense_Mutation p.R530C 0.41 deleterious(0) probably_damaging(0.983) TCGA-FS-A1ZZ-06 4 177605062 177605062 G A VEGFC 3'UTR 0.35 TCGA-FS-A1ZZ-06 4 177608992 177608992 G A VEGFC Missense_Mutation p.S265F 0.50 tolerated(0.12) benign(0.009) TCGA-FS-A1ZZ-06 4 183635383 183635383 G A TENM3 Missense_Mutation p.G789R 0.48 tolerated(0.08) probably_damaging(0.979) TCGA-FS-A1ZZ-06 4 186185657 186185657 G A SNX25 Missense_Mutation p.R102K 0.48 tolerated(0.41) benign(0.005) TCGA-FS-A1ZZ-06 4 186545032 186545032 G A SORBS2 Silent p.F613F 0.49 TCGA-FS-A1ZZ-06 4 187003870 187003870 C T TLR3 Missense_Mutation p.P344S 0.31 tolerated(0.12) probably_damaging(0.978) TCGA-FS-A1ZZ-06 4 187130396 187130396 C T CYP4V2 Missense_Mutation p.P459S 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 187158058 187158058 C T KLKB1 Missense_Mutation p.S151L 0.44 deleterious(0) benign(0.167) TCGA-FS-A1ZZ-06 4 187554955 187554955 G A FAT1 Silent p.F1402F 0.41 TCGA-FS-A1ZZ-06 4 20619147 20619147 G A SLIT2 Missense_Mutation p.E1408K 0.53 tolerated(0.2) benign(0.219) TCGA-FS-A1ZZ-06 4 20715058 20715058 C T PACRGL Missense_Mutation p.H169Y 0.57 tolerated(0.13) benign(0.133) TCGA-FS-A1ZZ-06 4 23830060 23830060 C T PPARGC1A Silent p.K240K 0.48 TCGA-FS-A1ZZ-06 4 24543617 24543617 G A DHX15 Missense_Mutation p.S455F 0.54 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 25028503 25028503 G A LGI2 Missense_Mutation p.H110Y 0.54 deleterious(0.04) possibly_damaging(0.811) TCGA-FS-A1ZZ-06 4 39606742 39606742 G A SMIM14 Silent p.P8P 0.45 TCGA-FS-A1ZZ-06 4 41648538 41648538 G A LIMCH1 Silent p.K431K 0.53 TCGA-FS-A1ZZ-06 4 42964963 42964963 C T GRXCR1 Missense_Mutation p.R147C 0.54 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A1ZZ-06 4 436612 436612 C T ZNF721 Silent p.R548R 0.43 TCGA-FS-A1ZZ-06 4 44450352 44450352 G A KCTD8 Silent p.L63L 0.40 TCGA-FS-A1ZZ-06 4 47644058 47644058 A T CORIN Missense_Mutation p.S693T 0.34 deleterious(0.01) possibly_damaging(0.735) TCGA-FS-A1ZZ-06 4 47765593 47765593 C T CORIN Missense_Mutation p.M140I 0.53 tolerated(0.95) benign(0.002) TCGA-FS-A1ZZ-06 4 49040068 49040068 G A CWH43 Silent p.R558R 0.44 TCGA-FS-A1ZZ-06 4 515512 515512 C T PIGG Missense_Mutation p.P466S 0.49 tolerated(0.16) possibly_damaging(0.601) TCGA-FS-A1ZZ-06 4 57389937 57389937 G A ARL9 Silent p.K89K 0.61 TCGA-FS-A1ZZ-06 4 5811294 5811294 C T EVC Missense_Mutation p.P913L 0.61 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 4 6590804 6590804 C T MAN2B2 Silent p.S199S 0.49 TCGA-FS-A1ZZ-06 4 68379911 68379911 T A CENPC Missense_Mutation p.E442V 0.51 deleterious(0.01) benign(0.291) TCGA-FS-A1ZZ-06 4 68784714 68784714 C T TMPRSS11A Missense_Mutation p.G313E 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 69337307 69337307 C T TMPRSS11E Silent p.P152P 0.38 TCGA-FS-A1ZZ-06 4 69964335 69964335 C T UGT2B7 Missense_Mutation p.P267S 0.32 deleterious(0.01) possibly_damaging(0.858) TCGA-FS-A1ZZ-06 4 70070152 70070152 G A UGT2B11 Missense_Mutation p.P436S 0.39 tolerated(0.16) possibly_damaging(0.875) TCGA-FS-A1ZZ-06 4 70350973 70350973 C T UGT2B4 Silent p.S421S 0.43 TCGA-FS-A1ZZ-06 4 70713508 70713508 G A SULT1E1 Missense_Mutation p.P167S 0.45 tolerated(0.68) benign(0.292) TCGA-FS-A1ZZ-06 4 71232442 71232442 G A SMR3A Missense_Mutation p.G46R 0.29 tolerated_low_confidence(0.92) unknown(0) TCGA-FS-A1ZZ-06 4 71347538 71347538 T C MUC7 Silent p.F359F 0.35 TCGA-FS-A1ZZ-06 4 76782056 76782056 C T PPEF2 Missense_Mutation p.E676K 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 76891466 76891466 G A SDAD1 Silent p.P293P 0.61 TCGA-FS-A1ZZ-06 4 77003456 77003456 T A ART3 Missense_Mutation p.F183L 0.42 deleterious(0.01) benign(0.393) TCGA-FS-A1ZZ-06 4 79204065 79204065 C T FRAS1 Missense_Mutation p.P400L 0.40 probably_damaging(1) TCGA-FS-A1ZZ-06 4 79295332 79295332 C T FRAS1 Silent p.L1026L 0.52 TCGA-FS-A1ZZ-06 4 79369265 79369265 C T FRAS1 Silent p.V2023V 0.50 TCGA-FS-A1ZZ-06 4 79369266 79369266 C T FRAS1 Nonsense_Mutation p.Q2024* 0.52 TCGA-FS-A1ZZ-06 4 79373459 79373460 AA - FRAS1 Frame_Shift_Del p.R2238Sfs*21 0.34 TCGA-FS-A1ZZ-06 4 7994616 7994616 C T ABLIM2 Missense_Mutation p.G553R 0.23 tolerated(0.2) benign(0.036) TCGA-FS-A1ZZ-06 4 80329056 80329056 C T GK2 Nonsense_Mutation p.W100* 0.45 TCGA-FS-A1ZZ-06 4 81207563 81207563 G A FGF5 Missense_Mutation p.E182K 0.41 tolerated(0.72) benign(0.079) TCGA-FS-A1ZZ-06 4 8229215 8229215 C T SH3TC1 Silent p.F598F 0.95 TCGA-FS-A1ZZ-06 4 8294051 8294051 G A HTRA3 Missense_Mutation p.G303R 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 4 83772734 83772734 G A SEC31A Silent p.I726I 0.40 TCGA-FS-A1ZZ-06 4 85663060 85663060 G A WDFY3 Silent p.L2030L 0.42 TCGA-FS-A1ZZ-06 4 8588889 8588889 C T GPR78 Silent p.L297L 0.38 TCGA-FS-A1ZZ-06 4 88732550 88732550 G A IBSP Missense_Mutation p.E148K 0.44 tolerated(0.12) possibly_damaging(0.686) TCGA-FS-A1ZZ-06 4 88766623 88766623 C T MEPE Silent p.S201S 0.46 TCGA-FS-A1ZZ-06 4 88766655 88766655 G A MEPE Missense_Mutation p.S212N 0.42 tolerated(0.14) possibly_damaging(0.532) TCGA-FS-A1ZZ-06 4 94690473 94690473 G A GRID2 Missense_Mutation p.A825T 0.48 deleterious(0.05) possibly_damaging(0.523) TCGA-FS-A1ZZ-06 4 96140146 96140146 C T UNC5C Missense_Mutation p.G540E 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 5 100231438 100231438 G A ST8SIA4 Silent p.I55I 0.45 TCGA-FS-A1ZZ-06 5 101592859 101592859 C T SLCO4C1 Missense_Mutation p.E477K 0.48 tolerated(0.09) benign(0.117) TCGA-FS-A1ZZ-06 5 101627249 101627249 C T SLCO4C1 Missense_Mutation p.M139I 0.39 deleterious(0.04) benign(0.008) TCGA-FS-A1ZZ-06 5 102526558 102526558 C T PPIP5K2 Missense_Mutation p.S1102F 0.29 deleterious_low_confidence(0.04) benign(0.099) TCGA-FS-A1ZZ-06 5 111066575 111066575 C T NREP 3'UTR 0.43 TCGA-FS-A1ZZ-06 5 112770035 112770035 G A TSSK1B Nonsense_Mutation p.R168* 0.48 TCGA-FS-A1ZZ-06 5 11397206 11397206 G T CTNND2 Silent p.T183T 0.42 TCGA-FS-A1ZZ-06 5 121188309 121188309 G A FTMT Silent p.K217K 0.42 TCGA-FS-A1ZZ-06 5 125887820 125887820 G A ALDH7A1 Missense_Mutation p.R404C 0.50 deleterious(0.01) benign(0.03) TCGA-FS-A1ZZ-06 5 132018273 132018273 G A IL4 Silent p.S152S 0.49 TCGA-FS-A1ZZ-06 5 132232341 132232341 G A AFF4 Missense_Mutation p.P661S 0.51 tolerated(0.4) probably_damaging(0.996) TCGA-FS-A1ZZ-06 5 134010889 134010889 A T SEC24A Missense_Mutation p.K378I 0.47 deleterious(0) benign(0.075) TCGA-FS-A1ZZ-06 5 135276297 135276297 T C FBXL21 RNA 0.44 TCGA-FS-A1ZZ-06 5 13766175 13766175 C T DNAH5 Silent p.V3337V 0.36 TCGA-FS-A1ZZ-06 5 13829759 13829759 G A DNAH5 Missense_Mutation p.R2102C 0.46 possibly_damaging(0.898) TCGA-FS-A1ZZ-06 5 13841099 13841099 C T DNAH5 Silent p.T1875T 0.38 TCGA-FS-A1ZZ-06 5 13841969 13841969 C T DNAH5 Silent p.T1772T 0.31 TCGA-FS-A1ZZ-06 5 13901544 13901544 G A DNAH5 Silent p.I623I 0.38 TCGA-FS-A1ZZ-06 5 139781650 139781650 C T ANKHD1 Missense_Mutation p.P33L 0.53 unknown(0) TCGA-FS-A1ZZ-06 5 140174479 140174479 A C PCDHA2 5'Flank 0.33 TCGA-FS-A1ZZ-06 5 140176410 140176410 C T PCDHA2 Missense_Mutation p.P621S 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-FS-A1ZZ-06 5 140182346 140182346 C T PCDHA3 Missense_Mutation p.P522S 0.46 tolerated_low_confidence(0.11) possibly_damaging(0.693) TCGA-FS-A1ZZ-06 5 140216051 140216051 G A PCDHA7 Missense_Mutation p.D695N 0.46 tolerated_low_confidence(0.1) benign(0.035) TCGA-FS-A1ZZ-06 5 140221922 140221922 G A PCDHA8 Missense_Mutation p.R339K 0.35 tolerated_low_confidence(0.37) benign(0) TCGA-FS-A1ZZ-06 5 140236230 140236230 G A PCDHA10 Silent p.L199L 0.41 TCGA-FS-A1ZZ-06 5 140476702 140476702 C T PCDHB2 Silent p.F776F 0.38 TCGA-FS-A1ZZ-06 5 140482344 140482344 C T PCDHB3 Missense_Mutation p.S704L 0.41 deleterious_low_confidence(0) benign(0.209) TCGA-FS-A1ZZ-06 5 140515701 140515701 C T PCDHB5 Missense_Mutation p.R229C 0.47 deleterious_low_confidence(0.04) benign(0.029) TCGA-FS-A1ZZ-06 5 140531002 140531002 C T PCDHB6 Silent p.P388P 0.40 TCGA-FS-A1ZZ-06 5 140536746 140536746 C T PCDHB17 Silent p.L390L 0.50 TCGA-FS-A1ZZ-06 5 140553447 140553447 G A PCDHB7 Missense_Mutation p.R344Q 0.33 deleterious_low_confidence(0.04) benign(0) TCGA-FS-A1ZZ-06 5 140553608 140553608 G A PCDHB7 Missense_Mutation p.E398K 0.46 tolerated_low_confidence(0.54) benign(0.003) TCGA-FS-A1ZZ-06 5 140558185 140558185 G A PCDHB8 Silent p.R190R 0.10 TCGA-FS-A1ZZ-06 5 140558497 140558497 G A PCDHB8 Silent p.K294K 0.15 TCGA-FS-A1ZZ-06 5 140572553 140572553 C T PCDHB10 Missense_Mutation p.S143L 0.38 tolerated_low_confidence(0.82) benign(0.002) TCGA-FS-A1ZZ-06 5 140754840 140754840 C A PCDHGA6 Nonsense_Mutation p.S397* 0.47 TCGA-FS-A1ZZ-06 5 140755352 140755352 C T PCDHGA6 Missense_Mutation p.P568S 0.40 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-FS-A1ZZ-06 5 140810340 140810340 G A PCDHGA12 Missense_Mutation p.R5Q 0.46 tolerated_low_confidence(0.39) benign(0.002) TCGA-FS-A1ZZ-06 5 141248533 141248533 G A PCDH1 Silent p.F168F 0.42 TCGA-FS-A1ZZ-06 5 147027972 147027972 C T JAKMIP2 Silent p.R301R 0.42 TCGA-FS-A1ZZ-06 5 147469114 147469114 G A SPINK5 Missense_Mutation p.E178K 0.37 deleterious(0.03) probably_damaging(0.994) TCGA-FS-A1ZZ-06 5 147830769 147830769 T C HTR4 Silent p.E381E 0.46 TCGA-FS-A1ZZ-06 5 149227206 149227206 A G PPARGC1B 3'UTR 0.47 TCGA-FS-A1ZZ-06 5 149457749 149457749 C G CSF1R Missense_Mutation p.A219P 0.46 tolerated(0.56) benign(0.008) TCGA-FS-A1ZZ-06 5 149457753 149457753 C T CSF1R Silent p.G217G 0.47 TCGA-FS-A1ZZ-06 5 149929308 149929308 C T NDST1 Silent p.F795F 0.47 TCGA-FS-A1ZZ-06 5 150920164 150920164 G A FAT2 Silent p.V3001V 0.44 TCGA-FS-A1ZZ-06 5 150923472 150923472 G A FAT2 Missense_Mutation p.P2406S 0.38 probably_damaging(0.973) TCGA-FS-A1ZZ-06 5 153030056 153030056 C T GRIA1 Silent p.L219L 0.31 TCGA-FS-A1ZZ-06 5 153190778 153190778 G A GRIA1 Missense_Mutation p.G915E 0.64 tolerated_low_confidence(0.09) benign(0.026) TCGA-FS-A1ZZ-06 5 156533826 156533826 C T HAVCR2 Missense_Mutation p.R69K 0.47 tolerated(0.83) benign(0.12) TCGA-FS-A1ZZ-06 5 156592907 156592907 T C FAM71B Silent p.Q91Q 0.47 TCGA-FS-A1ZZ-06 5 156932732 156932732 C T ADAM19 Missense_Mutation p.D359N 0.37 tolerated(0.1) benign(0.005) TCGA-FS-A1ZZ-06 5 161115987 161115987 C T GABRA6 Silent p.T86T 0.37 TCGA-FS-A1ZZ-06 5 167617455 167617455 G A TENM2 Missense_Mutation p.D895N 0.54 tolerated(0.33) benign(0.009) TCGA-FS-A1ZZ-06 5 167689721 167689721 G A TENM2 Missense_Mutation p.G2744E 0.31 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZZ-06 5 168098390 168098390 C T SLIT3 Missense_Mutation p.E1314K 0.45 tolerated(0.42) possibly_damaging(0.574) TCGA-FS-A1ZZ-06 5 169081436 169081436 C T DOCK2 Missense_Mutation p.P25S 0.44 tolerated(0.47) benign(0.003) TCGA-FS-A1ZZ-06 5 169509955 169509955 G A DOCK2 3'UTR 0.60 TCGA-FS-A1ZZ-06 5 169780940 169780940 T C KCNIP1 Silent p.F20F 0.11 TCGA-FS-A1ZZ-06 5 173040185 173040185 G A BOD1 Missense_Mutation p.P104L 0.49 tolerated(0.06) probably_damaging(0.948) TCGA-FS-A1ZZ-06 5 174869875 174869875 C T DRD1 Silent p.L76L 0.44 TCGA-FS-A1ZZ-06 5 176016107 176016107 G C CDHR2 Missense_Mutation p.G978R 0.32 deleterious(0) probably_damaging(0.984) TCGA-FS-A1ZZ-06 5 176024822 176024822 G A GPRIN1 Missense_Mutation p.P672S 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZZ-06 5 176025208 176025208 G A GPRIN1 Missense_Mutation p.A543V 0.35 tolerated(0.19) benign(0.019) TCGA-FS-A1ZZ-06 5 176072429 176072429 G A EIF4E1B Missense_Mutation p.G176R 0.50 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZZ-06 5 176314234 176314234 G A HK3 Missense_Mutation p.P569S 0.20 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZZ-06 5 176638709 176638709 C T NSD1 Silent p.D1103D 0.49 TCGA-FS-A1ZZ-06 5 178392474 178392474 G A ZNF454 Missense_Mutation p.E357K 0.55 tolerated(0.12) possibly_damaging(0.615) TCGA-FS-A1ZZ-06 5 178410150 178410150 C T GRM6 Missense_Mutation p.V733M 0.69 tolerated(0.24) possibly_damaging(0.482) TCGA-FS-A1ZZ-06 5 178634556 178634556 C T ADAMTS2 Silent p.G283G 0.55 TCGA-FS-A1ZZ-06 5 179996264 179996264 C T CNOT6 Silent p.L394L 0.46 TCGA-FS-A1ZZ-06 5 180166214 180166214 G A OR2Y1 Missense_Mutation p.P282L 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZZ-06 5 21842282 21842282 G A CDH12 Nonsense_Mutation p.R268* 0.49 TCGA-FS-A1ZZ-06 5 24488164 24488164 C T CDH10 Missense_Mutation p.D659N 0.46 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZZ-06 5 26890572 26890572 G A CDH9 Missense_Mutation p.P452L 0.34 tolerated(0.15) probably_damaging(0.999) TCGA-FS-A1ZZ-06 5 31317547 31317547 C T CDH6 Silent p.S526S 0.51 TCGA-FS-A1ZZ-06 5 31323152 31323152 C T CDH6 Missense_Mutation p.P704S 0.39 tolerated(0.22) benign(0.175) TCGA-FS-A1ZZ-06 5 34033477 34033477 G A C1QTNF3 Nonsense_Mutation p.R168* 0.44 TCGA-FS-A1ZZ-06 5 35806810 35806810 C T SPEF2 Missense_Mutation p.T1671I 0.44 tolerated(0.05) benign(0.001) TCGA-FS-A1ZZ-06 5 35807313 35807313 T C SPEF2 Silent p.F1779F 0.46 TCGA-FS-A1ZZ-06 5 36049520 36049520 C T UGT3A2 Missense_Mutation p.G105E 0.45 tolerated(1) benign(0.001) TCGA-FS-A1ZZ-06 5 38352305 38352305 C T EGFLAM Silent p.C139C 0.38 TCGA-FS-A1ZZ-06 5 39377290 39377290 C T DAB2 Missense_Mutation p.M533I 0.53 tolerated(0.13) benign(0.001) TCGA-FS-A1ZZ-06 5 41000375 41000375 C T MROH2B Missense_Mutation p.D1477N 0.40 tolerated(0.15) benign(0.043) TCGA-FS-A1ZZ-06 5 41004526 41004526 G A MROH2B Silent p.I1372I 0.49 TCGA-FS-A1ZZ-06 5 41054941 41054941 C T MROH2B Silent p.E345E 0.49 TCGA-FS-A1ZZ-06 5 41065475 41065475 C T MROH2B Missense_Mutation p.E107K 0.48 tolerated(0.26) possibly_damaging(0.754) TCGA-FS-A1ZZ-06 5 41199975 41199975 C T C6 Missense_Mutation p.G114R 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 5 49707186 49707186 G A EMB Silent p.I76I 0.48 TCGA-FS-A1ZZ-06 5 53467730 53467730 G A ARL15 Missense_Mutation p.P26L 0.36 deleterious(0) possibly_damaging(0.717) TCGA-FS-A1ZZ-06 5 55109503 55109503 G A DDX4 Missense_Mutation p.D540N 0.41 tolerated(0.88) benign(0.001) TCGA-FS-A1ZZ-06 5 56778487 56778487 C T ACTBL2 Silent p.G16G 0.39 TCGA-FS-A1ZZ-06 5 58021869 58021869 C T RAB3C Missense_Mutation p.A98V 0.43 deleterious(0) benign(0.389) TCGA-FS-A1ZZ-06 5 58120906 58120906 T G RAB3C Missense_Mutation p.V138G 0.55 deleterious(0.04) possibly_damaging(0.906) TCGA-FS-A1ZZ-06 5 61763082 61763082 C T IPO11 Missense_Mutation p.S254L 0.42 tolerated(0.54) benign(0.015) TCGA-FS-A1ZZ-06 5 63256305 63256305 G A HTR1A Silent p.I414I 0.42 TCGA-FS-A1ZZ-06 5 66479840 66479840 C T CD180 Silent p.E277E 0.51 TCGA-FS-A1ZZ-06 5 68805261 68805261 G A OCLN Missense_Mutation p.G115E 0.43 tolerated(0.26) benign(0.129) TCGA-FS-A1ZZ-06 5 70806623 70806623 C T BDP1 Missense_Mutation p.S1235F 0.51 tolerated(0.14) benign(0.081) TCGA-FS-A1ZZ-06 5 71622474 71622474 C A PTCD2 Missense_Mutation p.Q86K 0.46 tolerated(0.93) benign(0.038) TCGA-FS-A1ZZ-06 5 73168939 73168939 C T ARHGEF28 Silent p.F894F 0.42 TCGA-FS-A1ZZ-06 5 74077563 74077563 G A FAM169A Missense_Mutation p.P579S 0.50 tolerated(1) benign(0.006) TCGA-FS-A1ZZ-06 5 75914364 75914364 C T F2RL2 Silent p.L56L 0.46 TCGA-FS-A1ZZ-06 5 76715632 76715632 G A PDE8B Missense_Mutation p.V724I 0.49 tolerated(0.27) probably_damaging(0.994) TCGA-FS-A1ZZ-06 5 76754909 76754909 G A WDR41 Missense_Mutation p.S130L 0.51 deleterious(0) possibly_damaging(0.616) TCGA-FS-A1ZZ-06 5 79854664 79854664 C T ANKRD34B Missense_Mutation p.G392E 0.39 tolerated(0.67) benign(0.026) TCGA-FS-A1ZZ-06 5 81614135 81614135 C T ATP6AP1L 3'UTR 0.57 TCGA-FS-A1ZZ-06 5 82786188 82786188 C T VCAN Silent p.S114S 0.55 TCGA-FS-A1ZZ-06 5 82817412 82817412 G A VCAN Missense_Mutation p.G1096E 0.55 deleterious(0) possibly_damaging(0.664) TCGA-FS-A1ZZ-06 5 82833076 82833076 C T VCAN Silent p.T1418T 0.65 TCGA-FS-A1ZZ-06 5 82940367 82940367 G A HAPLN1 Missense_Mutation p.A197V 0.41 deleterious(0) probably_damaging(0.991) TCGA-FS-A1ZZ-06 5 82940383 82940383 C T HAPLN1 Missense_Mutation p.D192N 0.45 tolerated(0.19) benign(0.044) TCGA-FS-A1ZZ-06 5 90079760 90079760 C T GPR98 Silent p.P4513P 0.50 TCGA-FS-A1ZZ-06 5 90103553 90103553 C G GPR98 Missense_Mutation p.R4991G 0.47 benign(0) TCGA-FS-A1ZZ-06 5 95728533 95728533 C T PCSK1 3'UTR 0.60 TCGA-FS-A1ZZ-06 5 96215576 96215576 C T ERAP2 Missense_Mutation p.P63S 0.47 deleterious(0) probably_damaging(0.98) TCGA-FS-A1ZZ-06 6 105733416 105733416 G A PREP Silent p.I498I 0.89 TCGA-FS-A1ZZ-06 6 107088727 107088727 C T QRSL1 Missense_Mutation p.P72S 0.89 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 10898272 10898272 G A SYCP2L Missense_Mutation p.G122E 0.24 tolerated(0.52) benign(0.045) TCGA-FS-A1ZZ-06 6 117724305 117724305 C T ROS1 Missense_Mutation p.G192R 0.94 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 118596645 118596645 C T SLC35F1 Missense_Mutation p.L221F 0.89 tolerated(0.05) benign(0.06) TCGA-FS-A1ZZ-06 6 123104999 123104999 C T FABP7 3'UTR 0.79 TCGA-FS-A1ZZ-06 6 129762062 129762062 G A LAMA2 Missense_Mutation p.D2063N 0.84 tolerated(0.55) benign(0.278) TCGA-FS-A1ZZ-06 6 129766881 129766881 C T LAMA2 Missense_Mutation p.P2115L 0.84 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 131199260 131199260 G A EPB41L2 Missense_Mutation p.S676F 0.85 deleterious(0.01) probably_damaging(0.993) TCGA-FS-A1ZZ-06 6 13365137 13365137 G A GFOD1 Silent p.F337F 0.32 TCGA-FS-A1ZZ-06 6 136683601 136683601 C T MAP7 Missense_Mutation p.E527K 0.85 deleterious(0.01) unknown(0) TCGA-FS-A1ZZ-06 6 13697093 13697093 G A RANBP9 Nonsense_Mutation p.R203* 0.24 TCGA-FS-A1ZZ-06 6 137322558 137322558 A T IL20RA 3'UTR 1.00 TCGA-FS-A1ZZ-06 6 139563669 139563669 G A TXLNB Silent p.V683V 0.80 TCGA-FS-A1ZZ-06 6 149699485 149699485 C T TAB2 Missense_Mutation p.S145F 0.89 tolerated(0.07) benign(0.049) TCGA-FS-A1ZZ-06 6 152589264 152589264 G A SYNE1 Missense_Mutation p.L6248F 0.91 probably_damaging(0.999) TCGA-FS-A1ZZ-06 6 152737899 152737899 C T SYNE1 Silent p.V1891V 0.90 TCGA-FS-A1ZZ-06 6 157528792 157528792 C T ARID1B Nonsense_Mutation p.Q2173* 0.83 TCGA-FS-A1ZZ-06 6 158484847 158484847 G A SYNJ2 Missense_Mutation p.M384I 0.86 tolerated(0.29) benign(0.001) TCGA-FS-A1ZZ-06 6 159456927 159456927 C T TAGAP Missense_Mutation p.V710M 0.13 tolerated(0.23) benign(0.053) TCGA-FS-A1ZZ-06 6 161575237 161575237 G A AGPAT4 Missense_Mutation p.R152C 0.84 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZZ-06 6 21595725 21595725 C T SOX4 Silent p.D320D 0.33 TCGA-FS-A1ZZ-06 6 22297228 22297228 G A PRL 5'UTR 0.33 TCGA-FS-A1ZZ-06 6 22297229 22297229 G A PRL 5'UTR 0.32 TCGA-FS-A1ZZ-06 6 24423845 24423845 G A MRS2 Missense_Mutation p.D419N 0.29 tolerated_low_confidence(0.51) benign(0.004) TCGA-FS-A1ZZ-06 6 25849679 25849679 G A SLC17A3 Missense_Mutation p.L429F 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 6 2623697 2623697 C T C6orf195 Silent p.R120R 0.27 TCGA-FS-A1ZZ-06 6 26452373 26452373 C T BTN3A3 Missense_Mutation p.P497S 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 2679665 2679665 G A MYLK4 Intron 0.61 TCGA-FS-A1ZZ-06 6 28327526 28327526 C T ZKSCAN3 Missense_Mutation p.P55S 0.30 tolerated(0.32) probably_damaging(0.977) TCGA-FS-A1ZZ-06 6 28472176 28472176 G A GPX6 Silent p.L187L 0.29 TCGA-FS-A1ZZ-06 6 28540746 28540746 C T SCAND3 Missense_Mutation p.A974T 0.58 tolerated(0.05) probably_damaging(0.996) TCGA-FS-A1ZZ-06 6 28541304 28541304 T C SCAND3 Missense_Mutation p.S788G 0.34 tolerated_low_confidence(0.09) probably_damaging(0.931) TCGA-FS-A1ZZ-06 6 29323340 29323340 G A OR5V1 Silent p.F211F 0.30 TCGA-FS-A1ZZ-06 6 29394864 29394864 G A OR11A1 Silent p.F185F 0.26 TCGA-FS-A1ZZ-06 6 29429826 29429826 G A OR2H1 Missense_Mutation p.G94R 0.30 deleterious(0) probably_damaging(0.916) TCGA-FS-A1ZZ-06 6 29429827 29429827 G A OR2H1 Missense_Mutation p.G94E 0.30 deleterious(0) possibly_damaging(0.807) TCGA-FS-A1ZZ-06 6 29455614 29455614 C T MAS1L Silent p.Q22Q 0.71 TCGA-FS-A1ZZ-06 6 29713501 29713501 G A Y_RNA 5'Flank 0.13 TCGA-FS-A1ZZ-06 6 30075858 30075858 G A TRIM31 Silent p.S285S 0.19 TCGA-FS-A1ZZ-06 6 30652369 30652369 G A PPP1R18 Missense_Mutation p.P476L 0.65 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 6 30670992 30670992 A G MDC1 Silent p.G1918G 0.25 TCGA-FS-A1ZZ-06 6 31138094 31138094 C T POU5F1 Missense_Mutation p.G102R 0.19 tolerated(0.85) benign(0.001) TCGA-FS-A1ZZ-06 6 31556960 31556960 G A NCR3 Intron 0.48 TCGA-FS-A1ZZ-06 6 31847840 31847840 G A EHMT2 3'UTR 0.36 TCGA-FS-A1ZZ-06 6 31911516 31911516 C T CFB Silent p.L402L 0.28 TCGA-FS-A1ZZ-06 6 32013868 32013868 C T TNXB 5'UTR 0.29 TCGA-FS-A1ZZ-06 6 32015758 32015758 C T TNXB 5'Flank 0.28 TCGA-FS-A1ZZ-06 6 32015760 32015760 C T TNXB 5'Flank 0.32 TCGA-FS-A1ZZ-06 6 32021304 32021304 C T TNXB Silent p.Q2882Q 0.30 TCGA-FS-A1ZZ-06 6 32053851 32053851 G A TNXB Missense_Mutation p.P942S 0.31 probably_damaging(0.994) TCGA-FS-A1ZZ-06 6 32169986 32169986 G A NOTCH4 Missense_Mutation p.P1208S 0.62 tolerated(0.22) probably_damaging(0.974) TCGA-FS-A1ZZ-06 6 32169987 32169987 G A NOTCH4 Silent p.V1207V 0.62 TCGA-FS-A1ZZ-06 6 32549447 32549447 C T HLA-DRB1 Missense_Mutation p.G180E 0.11 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 32609835 32609835 C T HLA-DQA1 Missense_Mutation p.P140S 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 32610394 32610394 G A HLA-DQA1 Silent p.E207E 0.17 TCGA-FS-A1ZZ-06 6 32713654 32713654 C T HLA-DQA2 Missense_Mutation p.P140S 0.07 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZZ-06 6 32782215 32782215 C T HLA-DOB Silent p.R175R 0.28 TCGA-FS-A1ZZ-06 6 32905036 32905036 G A HLA-DMB Missense_Mutation p.H179Y 0.38 tolerated(1) benign(0.001) TCGA-FS-A1ZZ-06 6 33240417 33240417 C T RPS18 Missense_Mutation p.P6S 0.25 tolerated(0.13) benign(0.023) TCGA-FS-A1ZZ-06 6 35087959 35087959 G A TCP11 Silent p.S377S 0.32 TCGA-FS-A1ZZ-06 6 36043686 36043686 G A MAPK14 Missense_Mutation p.R186K 0.29 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZZ-06 6 36291943 36291943 G A C6orf222 Missense_Mutation p.S398F 0.31 deleterious(0.02) benign(0.348) TCGA-FS-A1ZZ-06 6 36566699 36566699 C T SRSF3 Missense_Mutation p.P94S 0.30 deleterious(0.02) unknown(0) TCGA-FS-A1ZZ-06 6 36982788 36982788 G A FGD2 Missense_Mutation p.D335N 0.20 tolerated(0.07) benign(0.342) TCGA-FS-A1ZZ-06 6 36993601 36993601 G A FGD2 Missense_Mutation p.E498K 0.22 tolerated(0.1) benign(0.021) TCGA-FS-A1ZZ-06 6 37186253 37186253 G A TMEM217 Missense_Mutation p.S185L 0.33 tolerated(0.91) benign(0) TCGA-FS-A1ZZ-06 6 37186304 37186304 C T TMEM217 Missense_Mutation p.R168Q 0.28 deleterious(0.01) probably_damaging(0.974) TCGA-FS-A1ZZ-06 6 3850681 3850681 C T FAM50B Silent p.F212F 0.30 TCGA-FS-A1ZZ-06 6 38791386 38791386 C T DNAH8 Silent p.L1040L 0.27 TCGA-FS-A1ZZ-06 6 38820989 38820989 C T DNAH8 Missense_Mutation p.P1650S 0.31 benign(0.216) TCGA-FS-A1ZZ-06 6 39162039 39162039 G A KCNK5 Silent p.F180F 0.25 TCGA-FS-A1ZZ-06 6 40400569 40400569 G A LRFN2 Missense_Mutation p.S95F 0.28 deleterious(0) probably_damaging(0.953) TCGA-FS-A1ZZ-06 6 41774027 41774027 G A USP49 Missense_Mutation p.S232L 0.33 tolerated(0.07) benign(0.124) TCGA-FS-A1ZZ-06 6 42036228 42036228 C T TAF8 Silent p.I221I 0.28 TCGA-FS-A1ZZ-06 6 42152462 42152462 G A GUCA1B 3'UTR 0.35 TCGA-FS-A1ZZ-06 6 43111199 43111199 C T PTK7 Missense_Mutation p.P706S 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A1ZZ-06 6 43173928 43173928 C T CUL9 Silent p.F1659F 0.42 TCGA-FS-A1ZZ-06 6 43184184 43184184 C A CUL9 Missense_Mutation p.S2075R 0.18 deleterious(0.04) benign(0.381) TCGA-FS-A1ZZ-06 6 43184185 43184185 C T CUL9 Missense_Mutation p.P2076S 0.18 tolerated(0.07) benign(0.171) TCGA-FS-A1ZZ-06 6 43226840 43226840 G A TTBK1 Missense_Mutation p.G361R 0.29 probably_damaging(0.987) TCGA-FS-A1ZZ-06 6 43267729 43267729 G A SLC22A7 Missense_Mutation p.G251E 0.27 deleterious(0) probably_damaging(0.982) TCGA-FS-A1ZZ-06 6 45514563 45514563 G A RUNX2 Splice_Site p.X363_splice 0.47 TCGA-FS-A1ZZ-06 6 46660568 46660568 C A TDRD6 Missense_Mutation p.P1568H 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-FS-A1ZZ-06 6 46803057 46803057 C T MEP1A Nonsense_Mutation p.Q619* 0.73 TCGA-FS-A1ZZ-06 6 47221100 47221100 G A TNFRSF21 Silent p.T467T 0.52 TCGA-FS-A1ZZ-06 6 47682281 47682281 G A GPR115 Missense_Mutation p.E434K 0.39 deleterious(0.03) possibly_damaging(0.866) TCGA-FS-A1ZZ-06 6 51524449 51524449 G A PKHD1 Missense_Mutation p.S3492F 0.50 deleterious(0) possibly_damaging(0.907) TCGA-FS-A1ZZ-06 6 52303121 52303121 A G EFHC1 Missense_Mutation p.Y102C 0.44 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 6 53373488 53373488 G A GCLC Missense_Mutation p.P284S 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A1ZZ-06 6 54791187 54791187 G A FAM83B Missense_Mutation p.D155N 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 6 54805839 54805839 G A FAM83B Silent p.R690R 0.48 TCGA-FS-A1ZZ-06 6 54805936 54805936 G A FAM83B Missense_Mutation p.E723K 0.40 tolerated(0.54) benign(0.002) TCGA-FS-A1ZZ-06 6 55147023 55147023 G A HCRTR2 Missense_Mutation p.G369E 0.44 deleterious(0) benign(0.387) TCGA-FS-A1ZZ-06 6 55659080 55659080 C T BMP5 Missense_Mutation p.D277N 0.39 deleterious(0.04) benign(0.261) TCGA-FS-A1ZZ-06 6 66044932 66044932 A T EYS Missense_Mutation p.D569E 0.93 tolerated(0.79) benign(0.107) TCGA-FS-A1ZZ-06 6 7247268 7247268 C T RREB1 Missense_Mutation p.P1529S 0.42 tolerated(0.64) benign(0.167) TCGA-FS-A1ZZ-06 6 74516767 74516767 C T CD109 Missense_Mutation p.T1054I 0.83 tolerated(0.46) benign(0.009) TCGA-FS-A1ZZ-06 6 7583110 7583110 C T DSP Missense_Mutation p.S1872F 0.38 probably_damaging(0.996) TCGA-FS-A1ZZ-06 6 76022383 76022383 G A FILIP1 Silent p.S1055S 0.84 TCGA-FS-A1ZZ-06 6 88126407 88126407 C T C6ORF165 Missense_Mutation p.P165S 0.85 deleterious(0) probably_damaging(0.925) TCGA-FS-A1ZZ-06 6 93955132 93955132 G A EPHA7 Silent p.F922F 0.89 TCGA-FS-A1ZZ-06 6 97246852 97246852 G A GPR63 Silent p.F252F 1.00 TCGA-FS-A1ZZ-06 7 100681034 100681034 C T MUC17 Missense_Mutation p.P2113S 0.55 unknown(0) TCGA-FS-A1ZZ-06 7 100681578 100681578 C T MUC17 Missense_Mutation p.S2294F 0.63 unknown(0) TCGA-FS-A1ZZ-06 7 100780314 100780314 G A SERPINE1 Missense_Mutation p.E374K 0.48 tolerated(0.08) possibly_damaging(0.841) TCGA-FS-A1ZZ-06 7 102608513 102608513 G A FBXL13 Missense_Mutation p.H183Y 0.57 deleterious(0.02) benign(0.001) TCGA-FS-A1ZZ-06 7 102669159 102669159 G A FBXL13 Silent p.V35V 0.56 TCGA-FS-A1ZZ-06 7 102850713 102850713 C - DPY19L2P2 Splice_Site 0.28 TCGA-FS-A1ZZ-06 7 103162566 103162566 C T RELN Missense_Mutation p.R2524Q 0.28 tolerated(0.08) probably_damaging(0.951) TCGA-FS-A1ZZ-06 7 103270545 103270545 G A RELN Silent p.S848S 0.33 TCGA-FS-A1ZZ-06 7 103294586 103294586 C T RELN Missense_Mutation p.R503K 0.56 tolerated(0.88) benign(0.003) TCGA-FS-A1ZZ-06 7 103338452 103338452 C T RELN Missense_Mutation p.E331K 0.31 tolerated(0.12) benign(0.022) TCGA-FS-A1ZZ-06 7 106508907 106508907 G A PIK3CG Missense_Mutation p.E301K 0.24 deleterious(0.04) benign(0.314) TCGA-FS-A1ZZ-06 7 107420173 107420173 C T SLC26A3 Silent p.K449K 0.66 TCGA-FS-A1ZZ-06 7 11485733 11485733 C T THSD7A Missense_Mutation p.D1007N 0.27 tolerated(0.12) probably_damaging(0.98) TCGA-FS-A1ZZ-06 7 117067579 117067579 G A ASZ1 5'Flank 0.53 TCGA-FS-A1ZZ-06 7 117232512 117232512 G A CFTR Missense_Mutation p.R764Q 0.32 tolerated(0.75) benign(0.003) TCGA-FS-A1ZZ-06 7 119915232 119915232 G A KCND2 Silent p.T182T 0.64 TCGA-FS-A1ZZ-06 7 120428792 120428792 C T TSPAN12 Missense_Mutation p.D258N 0.60 tolerated(0.21) benign(0.001) TCGA-FS-A1ZZ-06 7 120455792 120455792 C T TSPAN12 Silent p.Q117Q 0.51 TCGA-FS-A1ZZ-06 7 121960193 121960193 C T CADPS2 3'UTR 0.58 TCGA-FS-A1ZZ-06 7 122811882 122811882 C T SLC13A1 Nonsense_Mutation p.W102* 0.60 TCGA-FS-A1ZZ-06 7 122839970 122839970 G A SLC13A1 Missense_Mutation p.R11C 0.32 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 7 123593796 123593796 G A SPAM1 Missense_Mutation p.E58K 0.54 deleterious(0.01) probably_damaging(0.981) TCGA-FS-A1ZZ-06 7 126086241 126086241 T G GRM8 Missense_Mutation p.K872N 0.35 tolerated(0.06) benign(0.343) TCGA-FS-A1ZZ-06 7 128489238 128489238 C T FLNC Missense_Mutation p.S1644F 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 7 129856019 129856019 G A SSMEM1 Silent p.T148T 0.30 TCGA-FS-A1ZZ-06 7 130002769 130002769 G A CPA5 Silent p.L227L 0.35 TCGA-FS-A1ZZ-06 7 131870101 131870101 C T PLXNA4 Missense_Mutation p.D1039N 0.65 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A1ZZ-06 7 136700939 136700939 T A CHRM2 Missense_Mutation p.C443S 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 7 137773491 137773491 G A AKR1D1 Missense_Mutation p.E80K 0.50 tolerated(0.05) benign(0.072) TCGA-FS-A1ZZ-06 7 138764796 138764796 G A ZC3HAV1 Silent p.F297F 0.29 TCGA-FS-A1ZZ-06 7 138946034 138946034 G A UBN2 Silent p.K314K 0.23 TCGA-FS-A1ZZ-06 7 139529152 139529152 C T TBXAS1 5'UTR 0.65 TCGA-FS-A1ZZ-06 7 139818920 139818920 G A KDM7A Silent p.T413T 0.29 TCGA-FS-A1ZZ-06 7 140080110 140080110 A T SLC37A3 Missense_Mutation p.F57Y 0.40 tolerated(1) benign(0.003) TCGA-FS-A1ZZ-06 7 140453193 140453193 T C BRAF Missense_Mutation p.N581S 0.55 deleterious(0.04) benign(0.082) TCGA-FS-A1ZZ-06 7 141540865 141540865 C T PRSS37 5'UTR 0.35 TCGA-FS-A1ZZ-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.38 TCGA-FS-A1ZZ-06 7 141756641 141756641 C T MGAM Nonsense_Mutation p.Q1198* 0.31 TCGA-FS-A1ZZ-06 7 141954960 141954960 C T PRSS58 Silent p.V117V 0.32 TCGA-FS-A1ZZ-06 7 142045721 142045721 C T TRBV4-2 Silent p.F83F 0.40 TCGA-FS-A1ZZ-06 7 142131530 142131530 C T TRBV5-6 Silent p.Q75Q 0.31 TCGA-FS-A1ZZ-06 7 142139554 142139554 G A TRBV7-6 Missense_Mutation p.S24F 0.66 deleterious(0.05) possibly_damaging(0.577) TCGA-FS-A1ZZ-06 7 142206592 142206592 G A TRBV10-2 Missense_Mutation p.S88F 0.59 deleterious(0.02) probably_damaging(0.956) TCGA-FS-A1ZZ-06 7 142498870 142498870 G A TRBC2 Silent p.G49G 0.15 TCGA-FS-A1ZZ-06 7 142640915 142640915 C T KEL Missense_Mutation p.R516Q 0.26 tolerated(0.37) benign(0.005) TCGA-FS-A1ZZ-06 7 142829228 142829228 C T PIP Silent p.L7L 0.59 TCGA-FS-A1ZZ-06 7 143056116 143056116 C T FAM131B Silent p.G90G 0.29 TCGA-FS-A1ZZ-06 7 143140937 143140937 T G TAS2R60 Missense_Mutation p.F131C 0.64 deleterious(0) benign(0.015) TCGA-FS-A1ZZ-06 7 143141325 143141325 C T TAS2R60 Silent p.F260F 0.57 TCGA-FS-A1ZZ-06 7 143175075 143175075 G A TAS2R41 Missense_Mutation p.R37Q 0.26 tolerated(0.32) benign(0.023) TCGA-FS-A1ZZ-06 7 143632354 143632354 G A OR2F2 Missense_Mutation p.R10K 0.50 tolerated(0.32) benign(0.001) TCGA-FS-A1ZZ-06 7 143806811 143806811 G A OR2A2 Missense_Mutation p.G46R 0.32 deleterious(0.02) benign(0.127) TCGA-FS-A1ZZ-06 7 143807322 143807322 C T OR2A2 Missense_Mutation p.S216F 0.64 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 7 146741041 146741041 G A CNTNAP2 Missense_Mutation p.E149K 0.24 tolerated(1) benign(0.006) TCGA-FS-A1ZZ-06 7 147914416 147914416 G A CNTNAP2 Missense_Mutation p.R1016Q 0.26 tolerated(0.18) benign(0.018) TCGA-FS-A1ZZ-06 7 148950696 148950696 C T ZNF212 Silent p.G226G 0.67 TCGA-FS-A1ZZ-06 7 149474858 149474858 C T ZNF467 5'Flank 0.53 TCGA-FS-A1ZZ-06 7 149486319 149486319 C T SSPO RNA 0.60 TCGA-FS-A1ZZ-06 7 149493701 149493701 C T SSPO RNA 0.37 TCGA-FS-A1ZZ-06 7 149545301 149545301 C T ZNF862 Missense_Mutation p.P240L 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 7 150269557 150269557 C T GIMAP4 Silent p.A133A 0.61 TCGA-FS-A1ZZ-06 7 150389491 150389491 G A GIMAP2 Silent p.G39G 0.59 TCGA-FS-A1ZZ-06 7 150649632 150649632 C T KCNH2 Missense_Mutation p.E480K 0.69 deleterious(0) probably_damaging(0.971) TCGA-FS-A1ZZ-06 7 150775013 150775013 C T FASTK Missense_Mutation p.R331K 0.68 tolerated(0.96) benign(0.019) TCGA-FS-A1ZZ-06 7 150845828 150845828 C T GBX1 Missense_Mutation p.A314T 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 7 1513981 1513981 G A INTS1 Silent p.I1884I 0.31 TCGA-FS-A1ZZ-06 7 15652161 15652161 C T MEOX2 Missense_Mutation p.E256K 0.34 tolerated_low_confidence(0.11) possibly_damaging(0.5) TCGA-FS-A1ZZ-06 7 157414156 157414156 C T PTPRN2 Missense_Mutation p.E748K 0.65 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 7 19184566 19184566 G A FERD3L Silent p.I140I 0.49 TCGA-FS-A1ZZ-06 7 20201451 20201451 C T MACC1 Missense_Mutation p.G12E 0.46 tolerated(0.44) benign(0.003) TCGA-FS-A1ZZ-06 7 20441498 20441498 G A ITGB8 Missense_Mutation p.G479E 0.40 tolerated(0.76) benign(0.015) TCGA-FS-A1ZZ-06 7 20725334 20725334 G A ABCB5 Missense_Mutation p.D629N 0.47 tolerated(0.25) benign(0.006) TCGA-FS-A1ZZ-06 7 21628935 21628935 G A DNAH11 Missense_Mutation p.D695N 0.48 benign(0.015) TCGA-FS-A1ZZ-06 7 2302895 2302895 G A SNX8 Silent p.F295F 0.70 TCGA-FS-A1ZZ-06 7 23458423 23458423 C T IGF2BP3 Missense_Mutation p.R86Q 0.58 tolerated(0.05) possibly_damaging(0.899) TCGA-FS-A1ZZ-06 7 23854762 23854762 G A STK31 Splice_Site p.X921_splice 0.38 TCGA-FS-A1ZZ-06 7 2611196 2611196 C T IQCE Missense_Mutation p.S56F 0.29 tolerated(0.06) possibly_damaging(0.862) TCGA-FS-A1ZZ-06 7 2962334 2962334 C T CARD11 Missense_Mutation p.E735K 0.39 tolerated(0.07) benign(0.297) TCGA-FS-A1ZZ-06 7 29944095 29944095 C T WIPF3 Intron 0.47 TCGA-FS-A1ZZ-06 7 31014598 31014598 G A GHRHR Silent p.L275L 0.23 TCGA-FS-A1ZZ-06 7 31867938 31867938 C T PDE1C Missense_Mutation p.R478Q 0.68 deleterious(0) probably_damaging(0.952) TCGA-FS-A1ZZ-06 7 31912913 31912913 G A PDE1C Missense_Mutation p.R261C 0.62 deleterious(0) possibly_damaging(0.853) TCGA-FS-A1ZZ-06 7 35242183 35242183 G A TBX20 Silent p.A401A 0.59 TCGA-FS-A1ZZ-06 7 36633966 36633966 C T AOAH Missense_Mutation p.G306E 0.52 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 7 37901644 37901644 C T NME8 Silent p.I95I 0.59 TCGA-FS-A1ZZ-06 7 37901739 37901739 G A NME8 Missense_Mutation p.R127Q 0.56 deleterious(0) probably_damaging(0.989) TCGA-FS-A1ZZ-06 7 38725482 38725482 G A FAM183B Silent p.L42L 0.28 TCGA-FS-A1ZZ-06 7 45717493 45717493 A C ADCY1 Missense_Mutation p.E544A 0.30 tolerated(0.09) benign(0.128) TCGA-FS-A1ZZ-06 7 45719389 45719389 C T ADCY1 Silent p.V660V 0.35 TCGA-FS-A1ZZ-06 7 47454705 47454705 G A TNS3 Silent p.F191F 0.15 TCGA-FS-A1ZZ-06 7 50450371 50450371 G A IKZF1 Silent p.R185R 0.26 TCGA-FS-A1ZZ-06 7 50531072 50531072 G A DDC Missense_Mutation p.H434Y 0.54 tolerated(0.24) possibly_damaging(0.888) TCGA-FS-A1ZZ-06 7 50671703 50671703 G A GRB10 Silent p.L512L 0.59 TCGA-FS-A1ZZ-06 7 55914298 55914298 C T SEPT14 Silent p.T29T 0.71 TCGA-FS-A1ZZ-06 7 56148708 56148708 C T PHKG1 3'UTR 0.73 TCGA-FS-A1ZZ-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.91 TCGA-FS-A1ZZ-06 7 5754796 5754796 C T RNF216 Missense_Mutation p.C574Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 7 6006693 6006693 G A RSPH10B Missense_Mutation p.P19S 0.26 deleterious(0.02) possibly_damaging(0.798) TCGA-FS-A1ZZ-06 7 62752175 62752175 G A ZNF733P RNA 0.69 TCGA-FS-A1ZZ-06 7 63709527 63709527 G A ZNF679 Missense_Mutation p.R11Q 0.34 tolerated(0.57) benign(0.213) TCGA-FS-A1ZZ-06 7 64389038 64389038 C T ZNF273 Silent p.T444T 0.31 TCGA-FS-A1ZZ-06 7 6624750 6624750 C T ZDHHC4 Silent p.T200T 0.25 TCGA-FS-A1ZZ-06 7 72861688 72861688 A T BAZ1B Silent p.A1250A 0.65 TCGA-FS-A1ZZ-06 7 73474738 73474738 G A ELN Missense_Mutation p.G552R 0.28 unknown(0) TCGA-FS-A1ZZ-06 7 73483040 73483040 G A ELN 3'UTR 0.29 TCGA-FS-A1ZZ-06 7 7457503 7457503 G A COL28A1 Missense_Mutation p.S708L 0.62 tolerated(0.42) benign(0.001) TCGA-FS-A1ZZ-06 7 7571074 7571074 C T COL28A1 Missense_Mutation p.E196K 0.63 tolerated(0.25) possibly_damaging(0.487) TCGA-FS-A1ZZ-06 7 82072779 82072779 C T CACNA2D1 5'UTR 0.63 TCGA-FS-A1ZZ-06 7 82997178 82997178 C T SEMA3E Silent p.K684K 0.62 TCGA-FS-A1ZZ-06 7 86394884 86394884 C T GRM3 Silent p.L141L 0.34 TCGA-FS-A1ZZ-06 7 86415776 86415776 G A GRM3 Missense_Mutation p.G223E 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 7 86569381 86569381 G A KIAA1324L Silent p.I264I 0.65 TCGA-FS-A1ZZ-06 7 87175237 87175237 C T ABCB1 Missense_Mutation p.G610E 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 7 87229503 87229503 C T ABCB1 5'UTR 0.21 TCGA-FS-A1ZZ-06 7 87759722 87759722 C T ADAM22 Missense_Mutation p.S258F 0.36 deleterious(0) probably_damaging(0.996) TCGA-FS-A1ZZ-06 7 88423732 88423732 G A C7orf62 Silent p.L175L 0.31 TCGA-FS-A1ZZ-06 7 89897657 89897657 T A C7orf63 Missense_Mutation p.V164D 0.29 deleterious(0) benign(0.351) TCGA-FS-A1ZZ-06 7 92730535 92730535 G A SAMD9 3'UTR 0.32 TCGA-FS-A1ZZ-06 7 92733781 92733781 G A SAMD9 Silent p.L544L 0.61 TCGA-FS-A1ZZ-06 7 92970754 92970754 C T CCDC132 Missense_Mutation p.P692S 0.46 tolerated(0.78) benign(0.002) TCGA-FS-A1ZZ-06 7 94045765 94045765 C T COL1A2 Missense_Mutation p.P605S 0.62 unknown(0) TCGA-FS-A1ZZ-06 7 94913450 94913450 C T PPP1R9A Silent p.S1139S 0.63 TCGA-FS-A1ZZ-06 7 98256594 98256594 G A NPTX2 Missense_Mutation p.E336K 0.25 deleterious(0.01) possibly_damaging(0.7) TCGA-FS-A1ZZ-06 7 99015269 99015269 T C PTCD1 3'Flank 0.32 TCGA-FS-A1ZZ-06 7 99273791 99273791 T C CYP3A5 Missense_Mutation p.I38V 0.34 tolerated(0.1) benign(0.361) TCGA-FS-A1ZZ-06 7 99425672 99425672 C T CYP3A43 5'Flank 0.58 TCGA-FS-A1ZZ-06 7 99912223 99912223 G A SPDYE3 Missense_Mutation p.E351K 0.56 tolerated(0.08) benign(0.358) TCGA-FS-A1ZZ-06 8 101270989 101270989 G A RNF19A Missense_Mutation p.S771F 0.39 tolerated_low_confidence(0.67) benign(0.001) TCGA-FS-A1ZZ-06 8 101300206 101300206 G A RNF19A Missense_Mutation p.S66L 0.47 deleterious_low_confidence(0) benign(0.133) TCGA-FS-A1ZZ-06 8 102731743 102731743 G A NCALD Missense_Mutation p.P39S 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 8 10464818 10464818 C T RP1L1 Missense_Mutation p.E2264K 0.49 unknown(0) TCGA-FS-A1ZZ-06 8 10465880 10465880 C T RP1L1 Missense_Mutation p.E1910K 0.43 unknown(0) TCGA-FS-A1ZZ-06 8 10467103 10467103 C T RP1L1 Missense_Mutation p.R1502K 0.56 unknown(0) TCGA-FS-A1ZZ-06 8 10557840 10557840 G A C8orf74 Silent p.L248L 0.48 TCGA-FS-A1ZZ-06 8 108970382 108970382 A C RSPO2 Missense_Mutation p.V181G 0.40 tolerated(0.05) benign(0.001) TCGA-FS-A1ZZ-06 8 110598301 110598301 G A SYBU Missense_Mutation p.S173F 0.55 tolerated(0.1) possibly_damaging(0.888) TCGA-FS-A1ZZ-06 8 113316962 113316962 G A CSMD3 Missense_Mutation p.P2752S 0.41 deleterious(0.02) probably_damaging(0.98) TCGA-FS-A1ZZ-06 8 113529451 113529451 G A CSMD3 Missense_Mutation p.S1523F 0.52 deleterious(0.05) probably_damaging(0.982) TCGA-FS-A1ZZ-06 8 117778751 117778751 C T UTP23 5'UTR 0.33 TCGA-FS-A1ZZ-06 8 120233971 120233971 C T MAL2 Nonsense_Mutation p.Q93* 0.50 TCGA-FS-A1ZZ-06 8 124219538 124219538 C T FAM83A Silent p.V305V 0.47 TCGA-FS-A1ZZ-06 8 124243746 124243746 G A C8orf76 Silent p.S203S 0.41 TCGA-FS-A1ZZ-06 8 124253610 124253610 G A C8orf76 5'UTR 0.59 TCGA-FS-A1ZZ-06 8 129061414 129061414 G A MIR1207 RNA 0.44 TCGA-FS-A1ZZ-06 8 133008661 133008661 C T EFR3A Nonsense_Mutation p.R692* 0.57 TCGA-FS-A1ZZ-06 8 133141958 133141958 C T KCNQ3 Missense_Mutation p.G724R 0.45 deleterious(0.04) possibly_damaging(0.642) TCGA-FS-A1ZZ-06 8 133141959 133141959 C T KCNQ3 Silent p.G723G 0.47 TCGA-FS-A1ZZ-06 8 134057307 134057307 G A SLA Missense_Mutation p.R176C 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-FS-A1ZZ-06 8 134225127 134225127 G A WISP1 Silent p.T30T 0.39 TCGA-FS-A1ZZ-06 8 139145022 139145022 C T FAM135B Missense_Mutation p.M1345I 0.40 deleterious(0) probably_damaging(0.945) TCGA-FS-A1ZZ-06 8 139153455 139153455 G A FAM135B Missense_Mutation p.T1259I 0.45 deleterious(0) benign(0.393) TCGA-FS-A1ZZ-06 8 139163757 139163757 G A FAM135B Silent p.P987P 0.41 TCGA-FS-A1ZZ-06 8 139164331 139164331 G T FAM135B Missense_Mutation p.A796D 0.44 tolerated_low_confidence(0.26) benign(0.035) TCGA-FS-A1ZZ-06 8 139164633 139164633 G A FAM135B Silent p.V695V 0.38 TCGA-FS-A1ZZ-06 8 139190910 139190910 G A FAM135B Silent p.I299I 0.21 TCGA-FS-A1ZZ-06 8 13948015 13948015 G A SGCZ Silent p.Y292Y 0.37 TCGA-FS-A1ZZ-06 8 142186849 142186849 G A DENND3 Missense_Mutation p.D819N 0.46 deleterious(0) possibly_damaging(0.796) TCGA-FS-A1ZZ-06 8 143960499 143960499 G A CYP11B1 Missense_Mutation p.P115L 0.47 deleterious(0) probably_damaging(0.969) TCGA-FS-A1ZZ-06 8 144332213 144332213 C T ZFP41 Missense_Mutation p.S67L 0.38 deleterious(0) benign(0.254) TCGA-FS-A1ZZ-06 8 144463858 144463858 C T RHPN1 Silent p.I535I 0.36 TCGA-FS-A1ZZ-06 8 144672304 144672304 G A EEF1D Intron 0.55 TCGA-FS-A1ZZ-06 8 144942083 144942083 C T EPPK1 Missense_Mutation p.R1780K 0.38 benign(0.001) TCGA-FS-A1ZZ-06 8 145101882 145101882 C T SPATC1 3'UTR 0.60 TCGA-FS-A1ZZ-06 8 145998914 145998914 G A ZNF34 Missense_Mutation p.P474S 0.57 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 8 17053075 17053075 G A ZDHHC2 Silent p.Q105Q 0.47 TCGA-FS-A1ZZ-06 8 17228656 17228656 C T MTMR7 Missense_Mutation p.G67E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 8 1998971 1998971 G A MYOM2 Missense_Mutation p.E31K 0.50 deleterious(0.01) benign(0.168) TCGA-FS-A1ZZ-06 8 2040179 2040179 C T MYOM2 Missense_Mutation p.P612S 0.45 deleterious(0.02) possibly_damaging(0.607) TCGA-FS-A1ZZ-06 8 21938320 21938320 G A DMTN Missense_Mutation p.G321E 0.41 deleterious(0) benign(0.146) TCGA-FS-A1ZZ-06 8 21965412 21965412 G A NUDT18 Intron 0.67 TCGA-FS-A1ZZ-06 8 21976782 21976782 G A HR Missense_Mutation p.R998W 0.45 deleterious(0.01) possibly_damaging(0.88) TCGA-FS-A1ZZ-06 8 21976783 21976783 G A HR Silent p.H997H 0.48 TCGA-FS-A1ZZ-06 8 22049630 22049630 C T BMP1 Silent p.V382V 0.43 TCGA-FS-A1ZZ-06 8 24256445 24256445 G A ADAMDEC1 Missense_Mutation p.G274E 0.30 tolerated(0.44) benign(0.345) TCGA-FS-A1ZZ-06 8 24350600 24350600 C T ADAM7 Missense_Mutation p.S567F 0.42 tolerated(0.37) benign(0.076) TCGA-FS-A1ZZ-06 8 2808674 2808674 G A CSMD1 Missense_Mutation p.T3388I 0.43 benign(0.407) TCGA-FS-A1ZZ-06 8 2823397 2823397 G A CSMD1 Silent p.S3060S 0.33 TCGA-FS-A1ZZ-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.46 tolerated(1) benign(0.002) TCGA-FS-A1ZZ-06 8 3141826 3141826 G A CSMD1 Silent p.I1331I 0.50 TCGA-FS-A1ZZ-06 8 35406841 35406841 C T UNC5D Silent p.S45S 0.46 TCGA-FS-A1ZZ-06 8 37797557 37797557 G A GOT1L1 5'UTR 0.44 TCGA-FS-A1ZZ-06 8 38157053 38157053 G A WHSC1L1 Silent p.S889S 0.44 TCGA-FS-A1ZZ-06 8 38808425 38808425 C T PLEKHA2 Missense_Mutation p.P135S 0.41 tolerated(0.26) benign(0.007) TCGA-FS-A1ZZ-06 8 3889560 3889560 C T CSMD1 Silent p.T159T 0.42 TCGA-FS-A1ZZ-06 8 39496010 39496010 G A ADAM18 Missense_Mutation p.G285E 0.45 deleterious(0) probably_damaging(0.993) TCGA-FS-A1ZZ-06 8 41554074 41554074 C T ANK1 Missense_Mutation p.G964S 0.52 deleterious(0) probably_damaging(0.994) TCGA-FS-A1ZZ-06 8 42977840 42977840 C T POMK Silent p.F291F 0.38 TCGA-FS-A1ZZ-06 8 48707049 48707049 G A PRKDC Missense_Mutation p.P3490L 0.37 probably_damaging(0.999) TCGA-FS-A1ZZ-06 8 52284457 52284457 G A PXDNL Nonsense_Mutation p.R1293* 0.33 TCGA-FS-A1ZZ-06 8 52359630 52359630 C T PXDNL Missense_Mutation p.E487K 0.47 tolerated(0.05) probably_damaging(0.911) TCGA-FS-A1ZZ-06 8 53071640 53071640 G A ST18 Missense_Mutation p.P542S 0.43 tolerated(0.76) benign(0.07) TCGA-FS-A1ZZ-06 8 53084939 53084939 C T ST18 Missense_Mutation p.S161N 0.45 tolerated(0.07) benign(0.008) TCGA-FS-A1ZZ-06 8 55370970 55370970 C T SOX17 Missense_Mutation p.P91L 0.46 deleterious(0) probably_damaging(0.995) TCGA-FS-A1ZZ-06 8 55542052 55542052 C T RP1 Silent p.S1870S 0.39 TCGA-FS-A1ZZ-06 8 57221505 57221505 C T SDR16C5 Missense_Mutation p.G183R 0.57 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 8 62289259 62289259 T A CLVS1 Missense_Mutation p.I184K 0.54 deleterious(0.02) probably_damaging(0.986) TCGA-FS-A1ZZ-06 8 69017582 69017582 G A PREX2 Intron 0.52 TCGA-FS-A1ZZ-06 8 69032465 69032465 C T PREX2 Missense_Mutation p.A1180V 0.48 tolerated(1) benign(0.002) TCGA-FS-A1ZZ-06 8 69136846 69136846 C T PREX2 Missense_Mutation p.P1587L 0.42 deleterious(0) benign(0.007) TCGA-FS-A1ZZ-06 8 6914077 6914077 C T DEFA5 Missense_Mutation p.G48E 0.48 tolerated(1) benign(0.01) TCGA-FS-A1ZZ-06 8 69143648 69143648 C T PREX2 3'UTR 0.34 TCGA-FS-A1ZZ-06 8 69351778 69351778 C T C8orf34 Silent p.I124I 0.38 TCGA-FS-A1ZZ-06 8 71646647 71646647 C T XKR9 Silent p.F370F 0.41 TCGA-FS-A1ZZ-06 8 73849880 73849880 G A KCNB2 Missense_Mutation p.G764R 0.42 tolerated_low_confidence(0.09) benign(0.197) TCGA-FS-A1ZZ-06 8 76465357 76465357 G A HNF4G Missense_Mutation p.M180I 0.46 tolerated(0.12) possibly_damaging(0.631) TCGA-FS-A1ZZ-06 8 82356784 82356784 C T PMP2 Missense_Mutation p.G100D 0.25 tolerated(0.07) benign(0.022) TCGA-FS-A1ZZ-06 8 82667641 82667641 C A CHMP4C Silent p.I135I 0.38 TCGA-FS-A1ZZ-06 8 87076231 87076231 C T PSKH2 Missense_Mutation p.R272K 0.51 tolerated(0.18) benign(0.074) TCGA-FS-A1ZZ-06 8 91057136 91057136 T A DECR1 Silent p.I266I 0.42 TCGA-FS-A1ZZ-06 8 92346639 92346639 G A SLC26A7 Silent p.R253R 0.36 TCGA-FS-A1ZZ-06 8 95201490 95201490 C T CDH17 Silent p.G25G 0.42 TCGA-FS-A1ZZ-06 8 99019805 99019805 C T MATN2 Missense_Mutation p.R517C 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A1ZZ-06 9 101796861 101796861 G A COL15A1 Missense_Mutation p.E692K 0.83 tolerated(0.25) probably_damaging(0.989) TCGA-FS-A1ZZ-06 9 104133497 104133497 A G BAAT Missense_Mutation p.S64P 0.84 tolerated(1) benign(0.004) TCGA-FS-A1ZZ-06 9 111624630 111624630 G A ACTL7A Missense_Mutation p.G10R 0.83 tolerated_low_confidence(0.05) benign(0.01) TCGA-FS-A1ZZ-06 9 112015767 112015767 C T EPB41L4B Silent p.R411R 0.82 TCGA-FS-A1ZZ-06 9 113563105 113563105 G A MUSK Missense_Mutation p.R816Q 0.83 tolerated(0.08) probably_damaging(0.999) TCGA-FS-A1ZZ-06 9 114804188 114804188 A C SUSD1 Silent p.A734A 1.00 TCGA-FS-A1ZZ-06 9 116132362 116132362 C T BSPRY Silent p.F383F 0.90 TCGA-FS-A1ZZ-06 9 116132363 116132363 C T BSPRY Missense_Mutation p.P384S 0.92 tolerated(0.95) benign(0.004) TCGA-FS-A1ZZ-06 9 117085966 117085966 C T ORM1 Silent p.I46I 0.43 TCGA-FS-A1ZZ-06 9 119188357 119188357 G A ASTN2 Silent p.L1214L 0.85 TCGA-FS-A1ZZ-06 9 120476810 120476810 C T TLR4 Silent p.L802L 0.85 TCGA-FS-A1ZZ-06 9 125239349 125239349 T C OR1J1 Missense_Mutation p.N286S 0.92 deleterious_low_confidence(0) benign(0.334) TCGA-FS-A1ZZ-06 9 125330715 125330715 G A OR1L8 Silent p.I14I 0.93 TCGA-FS-A1ZZ-06 9 125391515 125391515 C T OR1B1 Silent p.L100L 0.83 TCGA-FS-A1ZZ-06 9 125437783 125437783 C T OR1L3 Silent p.A125A 0.96 TCGA-FS-A1ZZ-06 9 125437934 125437934 C T OR1L3 Missense_Mutation p.H176Y 0.87 deleterious(0.03) probably_damaging(0.984) TCGA-FS-A1ZZ-06 9 126132692 126132692 C T CRB2 Missense_Mutation p.P454S 0.85 deleterious(0.05) possibly_damaging(0.641) TCGA-FS-A1ZZ-06 9 133907434 133907434 G A LAMC3 Silent p.E227E 0.90 TCGA-FS-A1ZZ-06 9 134073006 134073006 T C NUP214 Silent p.T1375T 0.87 TCGA-FS-A1ZZ-06 9 135073983 135073983 G A NTNG2 Missense_Mutation p.E282K 0.85 tolerated(0.82) benign(0.139) TCGA-FS-A1ZZ-06 9 135374155 135374155 G A C9orf171 Missense_Mutation p.R126Q 1.00 tolerated(0.26) benign(0.024) TCGA-FS-A1ZZ-06 9 135942235 135942235 C T CEL Missense_Mutation p.P230L 0.83 deleterious(0.02) probably_damaging(1) TCGA-FS-A1ZZ-06 9 136310129 136310129 C T ADAMTS13 Missense_Mutation p.P856S 0.93 tolerated(0.45) benign(0.002) TCGA-FS-A1ZZ-06 9 136584063 136584063 C T SARDH Silent p.E339E 0.82 TCGA-FS-A1ZZ-06 9 136584065 136584065 C T SARDH Missense_Mutation p.E339K 0.82 tolerated(0.23) benign(0.046) TCGA-FS-A1ZZ-06 9 136584143 136584143 G A SARDH Missense_Mutation p.H313Y 0.83 deleterious(0) probably_damaging(0.992) TCGA-FS-A1ZZ-06 9 14722376 14722376 C T CER1 Missense_Mutation p.D99N 0.59 deleterious(0.05) possibly_damaging(0.536) TCGA-FS-A1ZZ-06 9 14797617 14797617 C T FREM1 Missense_Mutation p.D1240N 0.40 deleterious(0) probably_damaging(0.997) TCGA-FS-A1ZZ-06 9 14857629 14857629 C T FREM1 Silent p.L250L 0.40 TCGA-FS-A1ZZ-06 9 14859410 14859410 G A FREM1 Silent p.I134I 0.39 TCGA-FS-A1ZZ-06 9 19371830 19371830 A G DENND4C Intron 0.48 TCGA-FS-A1ZZ-06 9 20414405 20414405 G A MLLT3 Missense_Mutation p.H147Y 0.29 tolerated(1) benign(0.018) TCGA-FS-A1ZZ-06 9 2088560 2088560 C T SMARCA2 Missense_Mutation p.P944S 0.43 possibly_damaging(0.876) TCGA-FS-A1ZZ-06 9 32419074 32419074 C T ACO1 Nonsense_Mutation p.Q233* 0.50 TCGA-FS-A1ZZ-06 9 32632418 32632418 C T TAF1L Missense_Mutation p.E1054K 0.46 deleterious(0) benign(0.157) TCGA-FS-A1ZZ-06 9 32634574 32634574 G A TAF1L Missense_Mutation p.P335L 0.42 deleterious(0.05) benign(0.279) TCGA-FS-A1ZZ-06 9 32635000 32635000 G A TAF1L Missense_Mutation p.S193F 0.46 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-FS-A1ZZ-06 9 33798477 33798477 C T PRSS3 Intron 0.35 TCGA-FS-A1ZZ-06 9 34978046 34978046 G A KIAA1045 Missense_Mutation p.V381I 0.49 deleterious(0.04) benign(0.005) TCGA-FS-A1ZZ-06 9 35675809 35675809 C T CA9 Missense_Mutation p.S162F 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 9 35680799 35680799 C T CA9 Silent p.V429V 0.40 TCGA-FS-A1ZZ-06 9 35704686 35704686 C A TLN1 Missense_Mutation p.A1954S 0.46 tolerated(0.29) benign(0.393) TCGA-FS-A1ZZ-06 9 37537215 37537215 G A FBXO10 Silent p.F437F 0.46 TCGA-FS-A1ZZ-06 9 38397029 38397029 G C ALDH1B1 Missense_Mutation p.K428N 0.52 deleterious(0.03) benign(0.164) TCGA-FS-A1ZZ-06 9 39171436 39171436 G A CNTNAP3 Silent p.L421L 0.45 TCGA-FS-A1ZZ-06 9 3932396 3932396 C T GLIS3 Silent p.K649K 0.48 TCGA-FS-A1ZZ-06 9 43627116 43627116 G A SPATA31A6 Missense_Mutation p.S524L 0.82 tolerated(0.13) benign(0.006) TCGA-FS-A1ZZ-06 9 4663160 4663160 C T PPAPDC2 Missense_Mutation p.A262V 0.45 tolerated(0.64) benign(0.044) TCGA-FS-A1ZZ-06 9 6329092 6329092 C T TPD52L3 3'UTR 0.47 TCGA-FS-A1ZZ-06 9 77300446 77300446 A G RORB Missense_Mutation p.K431R 0.92 tolerated(1) benign(0.002) TCGA-FS-A1ZZ-06 9 77339641 77339641 G A TRPM6 Missense_Mutation p.S1986F 0.79 deleterious(0.04) benign(0.013) TCGA-FS-A1ZZ-06 9 78938195 78938195 G A PCSK5 Missense_Mutation p.E1417K 0.87 tolerated(0.16) benign(0.002) TCGA-FS-A1ZZ-06 9 82324555 82324555 C T TLE4 Silent p.H427H 0.82 TCGA-FS-A1ZZ-06 9 84532751 84532751 C T SPATA31D5P RNA 1.00 TCGA-FS-A1ZZ-06 9 85863229 85863229 G A FRMD3 Silent p.L466L 0.88 TCGA-FS-A1ZZ-06 9 90534158 90534158 C T SPATA31C1 Intron 0.83 TCGA-FS-A1ZZ-06 9 90534879 90534879 C T SPATA31C1 RNA 0.46 TCGA-FS-A1ZZ-06 9 92002362 92002362 G A SEMA4D Silent p.I423I 0.88 TCGA-FS-A1ZZ-06 9 95043111 95043111 A G IARS Missense_Mutation p.V221A 0.96 deleterious(0.05) benign(0.144) TCGA-FS-A1ZZ-06 9 95227269 95227269 C T ASPN Missense_Mutation p.G215E 0.88 deleterious(0.01) probably_damaging(0.992) TCGA-FS-A1ZZ-06 X 100515075 100515075 C T DRP2 Missense_Mutation p.S889L 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A1ZZ-06 X 100611058 100611058 C T BTK Silent p.Q516Q 0.43 TCGA-FS-A1ZZ-06 X 10084537 10084537 C T WWC3 Nonsense_Mutation p.Q352* 0.44 TCGA-FS-A1ZZ-06 X 100880198 100880198 C T ARMCX3 Missense_Mutation p.P77S 0.46 tolerated(0.84) probably_damaging(0.968) TCGA-FS-A1ZZ-06 X 101408776 101408776 G A BEX5 3'UTR 0.31 TCGA-FS-A1ZZ-06 X 101572245 101572245 C T NXF2 Intron 0.45 TCGA-FS-A1ZZ-06 X 101817561 101817561 G A NXF4 RNA 0.40 TCGA-FS-A1ZZ-06 X 10181893 10181893 C T CLCN4 Silent p.F583F 0.50 TCGA-FS-A1ZZ-06 X 101912384 101912384 G A GPRASP1 Missense_Mutation p.M1181I 0.42 deleterious(0) possibly_damaging(0.481) TCGA-FS-A1ZZ-06 X 102632840 102632840 C G NGFRAP1 3'UTR 0.31 TCGA-FS-A1ZZ-06 X 10463689 10463689 C T MID1 Missense_Mutation p.D267N 0.43 deleterious(0.01) benign(0.371) TCGA-FS-A1ZZ-06 X 105011373 105011373 G A IL1RAPL2 Missense_Mutation p.A594T 0.54 tolerated_low_confidence(0.55) benign(0.025) TCGA-FS-A1ZZ-06 X 105449609 105449609 C T MUM1L1 Nonsense_Mutation p.Q62* 0.48 TCGA-FS-A1ZZ-06 X 106066550 106066550 G A TBC1D8B Silent p.E227E 0.34 TCGA-FS-A1ZZ-06 X 107977900 107977900 C T IRS4 Missense_Mutation p.G559S 0.41 tolerated_low_confidence(0.25) unknown(0) TCGA-FS-A1ZZ-06 X 108631727 108631727 G A GUCY2F Missense_Mutation p.L983F 0.41 deleterious(0) probably_damaging(0.979) TCGA-FS-A1ZZ-06 X 109764816 109764816 G A TDGF1P3 RNA 0.47 TCGA-FS-A1ZZ-06 X 115304719 115304719 C T AGTR2 3'UTR 0.44 TCGA-FS-A1ZZ-06 X 115584228 115584228 C T SLC6A14 Silent p.L402L 0.49 TCGA-FS-A1ZZ-06 X 117529212 117529212 G A WDR44 Missense_Mutation p.E320K 0.40 deleterious(0.05) benign(0.369) TCGA-FS-A1ZZ-06 X 118151559 118151559 G A LONRF3 Missense_Mutation p.R729Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 X 122538605 122538605 G A GRIA3 Missense_Mutation p.G447E 0.29 deleterious(0) possibly_damaging(0.876) TCGA-FS-A1ZZ-06 X 123554651 123554651 C T TENM1 Missense_Mutation p.D1498N 0.27 deleterious(0.03) benign(0.118) TCGA-FS-A1ZZ-06 X 123785911 123785911 C T TENM1 Missense_Mutation p.D478N 0.32 tolerated(0.34) benign(0.001) TCGA-FS-A1ZZ-06 X 123871003 123871003 G A TENM1 Missense_Mutation p.P194S 0.74 tolerated_low_confidence(0.17) possibly_damaging(0.542) TCGA-FS-A1ZZ-06 X 124029937 124029937 C T TENM1 Nonsense_Mutation p.W124* 0.60 TCGA-FS-A1ZZ-06 X 125299834 125299834 G A DCAF12L2 Missense_Mutation p.S25L 0.69 tolerated_low_confidence(0.14) benign(0.003) TCGA-FS-A1ZZ-06 X 12735962 12735962 C T FRMPD4 Missense_Mutation p.S1006L 0.50 deleterious_low_confidence(0.04) probably_damaging(0.941) TCGA-FS-A1ZZ-06 X 12827410 12827410 G A PRPS2 Missense_Mutation p.D125N 0.44 tolerated(0.23) benign(0.075) TCGA-FS-A1ZZ-06 X 129629111 129629111 C T RP1-274L7.1 RNA 0.67 TCGA-FS-A1ZZ-06 X 129790564 129790564 C T ENOX2 Missense_Mutation p.E403K 0.37 tolerated(0.17) benign(0.345) TCGA-FS-A1ZZ-06 X 130678528 130678528 C T OR13H1 Silent p.L161L 0.69 TCGA-FS-A1ZZ-06 X 131212947 131212947 C T FRMD7 Silent p.V366V 0.33 TCGA-FS-A1ZZ-06 X 134030969 134030969 C T MOSPD1 Missense_Mutation p.G109E 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 X 134992691 134992691 C T SAGE1 Missense_Mutation p.S661L 0.62 tolerated(0.14) benign(0.07) TCGA-FS-A1ZZ-06 X 135289978 135289978 C T FHL1 Missense_Mutation p.T120I 0.29 deleterious(0.04) benign(0.261) TCGA-FS-A1ZZ-06 X 135431967 135431967 A G GPR112 Silent p.T2034T 0.26 TCGA-FS-A1ZZ-06 X 135480048 135480048 C T GPR112 Silent p.S2731S 0.30 TCGA-FS-A1ZZ-06 X 137714883 137714883 G A FGF13 3'Flank 0.61 TCGA-FS-A1ZZ-06 X 13834993 13834993 C T GPM6B Missense_Mutation p.E11K 0.50 tolerated_low_confidence(0.06) benign(0.059) TCGA-FS-A1ZZ-06 X 138664631 138664631 C T MCF2 Silent p.%3D 0.32 TCGA-FS-A1ZZ-06 X 138708447 138708447 C T MCF2 Missense_Mutation p.D258N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A1ZZ-06 X 138840015 138840015 G A ATP11C Silent p.F887F 0.46 TCGA-FS-A1ZZ-06 X 139586875 139586875 C T SOX3 Silent p.A117A 0.30 TCGA-FS-A1ZZ-06 X 140335767 140335767 C T SPANXC Silent p.V59V 0.41 TCGA-FS-A1ZZ-06 X 140786577 140786577 C T SPANXD 5'UTR 0.51 TCGA-FS-A1ZZ-06 X 1409240 1409240 G A CSF2RA Missense_Mutation p.E162K 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-FS-A1ZZ-06 X 140983291 140983291 G A MAGEC3 Missense_Mutation p.E357K 0.73 tolerated(0.07) benign(0.292) TCGA-FS-A1ZZ-06 X 140993622 140993622 C T MAGEC1 Silent p.F144F 0.55 TCGA-FS-A1ZZ-06 X 140993630 140993630 C T MAGEC1 Missense_Mutation p.S147F 0.56 tolerated_low_confidence(0.1) possibly_damaging(0.485) TCGA-FS-A1ZZ-06 X 140994252 140994252 C T MAGEC1 Silent p.F354F 0.55 TCGA-FS-A1ZZ-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.33 deleterious_low_confidence(0) benign(0.006) TCGA-FS-A1ZZ-06 X 140995230 140995230 G A MAGEC1 Silent p.E680E 0.64 TCGA-FS-A1ZZ-06 X 140996397 140996397 C T MAGEC1 Silent p.F1069F 0.30 TCGA-FS-A1ZZ-06 X 142795202 142795202 C T SPANXN2 Missense_Mutation p.G159E 0.60 tolerated(0.15) unknown(0) TCGA-FS-A1ZZ-06 X 147088275 147088275 C T FMR1NB Missense_Mutation p.L151F 0.31 tolerated(0.26) benign(0) TCGA-FS-A1ZZ-06 X 14708921 14708921 C T GLRA2 Silent p.F340F 0.51 TCGA-FS-A1ZZ-06 X 148044272 148044272 A C AFF2 Missense_Mutation p.R906S 0.62 tolerated(0.07) probably_damaging(0.994) TCGA-FS-A1ZZ-06 X 151092293 151092293 G A MAGEA4 Missense_Mutation p.E53K 0.63 tolerated(0.18) probably_damaging(0.981) TCGA-FS-A1ZZ-06 X 151336938 151336938 G A GABRA3 Missense_Mutation p.S414F 0.59 tolerated(0.35) benign(0.389) TCGA-FS-A1ZZ-06 X 151997145 151997145 G A CETN2 Missense_Mutation p.S122L 0.61 deleterious(0.02) possibly_damaging(0.717) TCGA-FS-A1ZZ-06 X 152159858 152159858 G A PNMA5 Silent p.P95P 0.59 TCGA-FS-A1ZZ-06 X 152226667 152226667 G A PNMA3 Missense_Mutation p.E419K 0.36 deleterious(0.01) possibly_damaging(0.908) TCGA-FS-A1ZZ-06 X 153043462 153043462 G T PLXNB3 Missense_Mutation p.R1797L 0.13 deleterious(0.01) possibly_damaging(0.511) TCGA-FS-A1ZZ-06 X 153135271 153135271 C T L1CAM Silent p.G370G 0.13 TCGA-FS-A1ZZ-06 X 153186550 153186550 C T ARHGAP4 Silent p.T166T 0.92 TCGA-FS-A1ZZ-06 X 153640454 153640454 G A TAZ Silent p.R47R 0.24 TCGA-FS-A1ZZ-06 X 153648499 153648499 C T TAZ Intron 0.32 TCGA-FS-A1ZZ-06 X 153997502 153997502 G A DKC1 Missense_Mutation p.D278N 0.31 deleterious(0.02) benign(0.406) TCGA-FS-A1ZZ-06 X 154157927 154157927 C T F8 Missense_Mutation p.E1380K 0.29 tolerated(0.59) benign(0.001) TCGA-FS-A1ZZ-06 X 154300608 154300608 G A BRCC3 Missense_Mutation p.D44N 0.25 tolerated(0.2) benign(0.354) TCGA-FS-A1ZZ-06 X 154467184 154467184 C T VBP1 3'UTR 0.32 TCGA-FS-A1ZZ-06 X 17744328 17744328 C T NHS Missense_Mutation p.S680F 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 X 17819275 17819275 C T RAI2 Missense_Mutation p.D286N 0.51 deleterious(0.02) unknown(0) TCGA-FS-A1ZZ-06 X 18209205 18209205 C T BEND2 Missense_Mutation p.G402R 0.47 tolerated(0.09) benign(0.013) TCGA-FS-A1ZZ-06 X 18219951 18219951 G A BEND2 Silent p.F339F 0.41 TCGA-FS-A1ZZ-06 X 19027767 19027767 C T GPR64 Missense_Mutation p.A467T 0.41 deleterious(0.01) possibly_damaging(0.67) TCGA-FS-A1ZZ-06 X 19482481 19482481 G A MAP3K15 Missense_Mutation p.P190L 0.54 deleterious(0) possibly_damaging(0.852) TCGA-FS-A1ZZ-06 X 20034406 20034406 C T MAP7D2 Missense_Mutation p.E484K 0.49 deleterious(0.02) unknown(0) TCGA-FS-A1ZZ-06 X 2139073 2139073 G A DHRSX 3'UTR 0.39 TCGA-FS-A1ZZ-06 X 21874647 21874647 C T YY2 Silent p.I15I 0.48 TCGA-FS-A1ZZ-06 X 2408288 2408288 G A ZBED1 Missense_Mutation p.P158L 0.42 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 X 24226484 24226484 T C ZFX Missense_Mutation p.Y364H 0.39 tolerated(0.05) possibly_damaging(0.899) TCGA-FS-A1ZZ-06 X 24229431 24229431 C T ZFX Nonsense_Mutation p.R786* 0.33 TCGA-FS-A1ZZ-06 X 27997146 27997146 C T DCAF8L1 3'UTR 0.53 TCGA-FS-A1ZZ-06 X 31165473 31165473 C T DMD Silent p.L3572L 0.52 TCGA-FS-A1ZZ-06 X 31190524 31190524 T C DMD Silent p.A3445A 0.42 TCGA-FS-A1ZZ-06 X 31645817 31645817 T A DMD Silent p.G2730G 0.27 TCGA-FS-A1ZZ-06 X 31645819 31645819 C T DMD Missense_Mutation p.G2730R 0.26 probably_damaging(0.979) TCGA-FS-A1ZZ-06 X 3228603 3228603 C T MXRA5 Silent p.P2547P 0.28 TCGA-FS-A1ZZ-06 X 34150189 34150189 G A FAM47A Silent p.L69L 0.40 TCGA-FS-A1ZZ-06 X 34961803 34961803 G A FAM47B Silent p.P285P 0.49 TCGA-FS-A1ZZ-06 X 37026482 37026482 C T FAM47C 5'UTR 0.62 TCGA-FS-A1ZZ-06 X 37028690 37028690 C T FAM47C Missense_Mutation p.S736F 0.37 tolerated(0.07) possibly_damaging(0.683) TCGA-FS-A1ZZ-06 X 37658288 37658288 G A CYBB Missense_Mutation p.G252E 0.53 tolerated(0.28) benign(0.411) TCGA-FS-A1ZZ-06 X 44950036 44950036 C T KDM6A Missense_Mutation p.P1269S 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A1ZZ-06 X 46713160 46713160 C T RP2 Missense_Mutation p.R118C 0.46 deleterious(0) probably_damaging(0.999) TCGA-FS-A1ZZ-06 X 46949287 46949287 C T RGN Silent p.S153S 0.49 TCGA-FS-A1ZZ-06 X 47272621 47272621 G A ZNF157 Silent p.E383E 0.45 TCGA-FS-A1ZZ-06 X 49061740 49061740 G A CACNA1F Silent p.L1931L 0.40 TCGA-FS-A1ZZ-06 X 49105171 49105171 G A CCDC22 Silent p.R469R 0.52 TCGA-FS-A1ZZ-06 X 49143621 49143621 C T PPP1R3F 3'UTR 0.57 TCGA-FS-A1ZZ-06 X 49161358 49161358 C T GAGE10 Missense_Mutation p.S7L 0.42 tolerated(0.13) benign(0.049) TCGA-FS-A1ZZ-06 X 51641707 51641707 G A MAGED1 Silent p.R660R 0.57 TCGA-FS-A1ZZ-06 X 56310850 56310850 C T KLF8 Missense_Mutation p.R335W 0.44 deleterious(0) possibly_damaging(0.761) TCGA-FS-A1ZZ-06 X 57405126 57405126 C T FAAH2 Missense_Mutation p.A262V 0.45 tolerated(0.31) benign(0.008) TCGA-FS-A1ZZ-06 X 57619480 57619480 C T ZXDB Silent p.P333P 0.56 TCGA-FS-A1ZZ-06 X 5950779 5950779 T G NLGN4X Intron 0.36 TCGA-FS-A1ZZ-06 X 6069560 6069560 A T NLGN4X 5'UTR 0.47 TCGA-FS-A1ZZ-06 X 63412503 63412503 G A AMER1 Nonsense_Mutation p.Q222* 0.48 TCGA-FS-A1ZZ-06 X 63574672 63574672 G A MTMR8 Silent p.A151A 0.42 TCGA-FS-A1ZZ-06 X 64708956 64708956 C T ZC3H12B Missense_Mutation p.S92F 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A1ZZ-06 X 67943842 67943842 G A STARD8 Missense_Mutation p.D1025N 0.37 deleterious(0.03) benign(0.098) TCGA-FS-A1ZZ-06 X 68381536 68381536 C T PJA1 Missense_Mutation p.G516R 0.33 tolerated(0.05) probably_damaging(0.985) TCGA-FS-A1ZZ-06 X 69669618 69669618 G A DLG3 Silent p.K204K 0.50 TCGA-FS-A1ZZ-06 X 6968386 6968386 G A HDHD1 Missense_Mutation p.S236F 0.57 deleterious(0) probably_damaging(0.95) TCGA-FS-A1ZZ-06 X 70466457 70466457 C T ZMYM3 Silent p.G800G 0.38 TCGA-FS-A1ZZ-06 X 70586246 70586246 G A TAF1 Missense_Mutation p.E28K 0.47 tolerated_low_confidence(0.08) benign(0.039) TCGA-FS-A1ZZ-06 X 70784462 70784462 G A OGT Silent p.K816K 0.32 TCGA-FS-A1ZZ-06 X 70823746 70823746 G A ACRC Missense_Mutation p.D207N 0.43 unknown(0) TCGA-FS-A1ZZ-06 X 70837017 70837017 A G CXCR3 Missense_Mutation p.L149P 0.32 deleterious(0) probably_damaging(0.998) TCGA-FS-A1ZZ-06 X 72299268 72299268 C T PABPC1L2A 5'UTR 0.20 TCGA-FS-A1ZZ-06 X 72433197 72433197 C T NAP1L2 Missense_Mutation p.G378R 0.50 tolerated(0.48) benign(0.017) TCGA-FS-A1ZZ-06 X 7268244 7268244 C T STS Missense_Mutation p.S565F 0.43 tolerated(0.78) benign(0.401) TCGA-FS-A1ZZ-06 X 73046495 73046495 C T XIST RNA 0.48 TCGA-FS-A1ZZ-06 X 73072336 73072336 C T XIST RNA 0.20 TCGA-FS-A1ZZ-06 X 73524285 73524285 C T ZCCHC13 Missense_Mutation p.L62F 0.37 tolerated(0.26) benign(0.046) TCGA-FS-A1ZZ-06 X 77218332 77218332 C T ATP7A Intron 0.25 TCGA-FS-A1ZZ-06 X 77244104 77244104 C T ATP7A Missense_Mutation p.H163Y 0.47 tolerated(1) benign(0) TCGA-FS-A1ZZ-06 X 78426648 78426648 G A GPR174 Missense_Mutation p.M48I 0.44 tolerated(1) benign(0.012) TCGA-FS-A1ZZ-06 X 79947370 79947370 C T BRWD3 Missense_Mutation p.E1145K 0.42 deleterious(0.03) possibly_damaging(0.781) TCGA-FS-A1ZZ-06 X 79980524 79980524 C T BRWD3 Missense_Mutation p.D477N 0.37 deleterious(0.04) possibly_damaging(0.897) TCGA-FS-A1ZZ-06 X 80370690 80370690 C T HMGN5 Missense_Mutation p.E103K 0.53 tolerated(0.25) unknown(0) TCGA-FS-A1ZZ-06 X 82763472 82763472 C T POU3F4 Missense_Mutation p.P47L 0.48 tolerated(0.08) benign(0.065) TCGA-FS-A1ZZ-06 X 82763704 82763704 C T POU3F4 Silent p.I124I 0.49 TCGA-FS-A1ZZ-06 X 83320119 83320119 C T RPS6KA6 Missense_Mutation p.D658N 0.42 deleterious(0.02) benign(0.042) TCGA-FS-A1ZZ-06 X 84363419 84363419 G A SATL1 Missense_Mutation p.P186S 0.37 tolerated(0.49) possibly_damaging(0.803) TCGA-FS-A1ZZ-06 X 84526400 84526400 C T ZNF711 Missense_Mutation p.P618S 0.42 deleterious(0.01) probably_damaging(1) TCGA-FS-A1ZZ-06 X 84561243 84561243 C T POF1B Missense_Mutation p.E421K 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A1ZZ-06 X 85969711 85969711 C T DACH2 Silent p.T364T 0.47 TCGA-FS-A1ZZ-06 X 8768129 8768129 C T FAM9A Silent p.T28T 0.45 TCGA-FS-A1ZZ-06 X 91723302 91723302 C T PCDH11X Silent p.F1116F 0.67 TCGA-FS-A1ZZ-06 X 96139537 96139537 C T RPA4 Silent p.I76I 0.39 TCGA-FS-A1ZZ-06 X 96502837 96502837 C T DIAPH2 Missense_Mutation p.T948I 0.48 deleterious(0.01) possibly_damaging(0.468) TCGA-FS-A1ZZ-06 X 9659735 9659735 G A TBL1X Missense_Mutation p.D245N 0.34 tolerated(0.31) benign(0.117) TCGA-FS-A1ZZ-06 X 99885846 99885846 G A TSPAN6 Silent p.L229L 0.39 TCGA-FS-A4F0-06 10 103649230 103649230 A T C10orf76 Missense_Mutation p.F600Y 0.45 tolerated(0.07) probably_damaging(0.967) TCGA-FS-A4F0-06 10 105048322 105048322 A G INA Missense_Mutation p.I466V 0.55 tolerated(1) benign(0) TCGA-FS-A4F0-06 10 105194715 105194715 C - PDCD11 Frame_Shift_Del p.Q1278Rfs*16 0.34 TCGA-FS-A4F0-06 10 111881905 111881905 T C ADD3 Missense_Mutation p.L333P 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 10 115411616 115411616 C T NRAP Silent p.V207V 0.32 TCGA-FS-A4F0-06 10 116045812 116045812 G A VWA2 Missense_Mutation p.R371Q 0.46 tolerated(1) benign(0.001) TCGA-FS-A4F0-06 10 116698242 116698242 C T TRUB1 Missense_Mutation p.P77L 0.47 deleterious(0) probably_damaging(0.927) TCGA-FS-A4F0-06 10 118084885 118084885 C T CCDC172 Silent p.I50I 0.32 TCGA-FS-A4F0-06 10 12129700 12129700 T C DHTKD1 Missense_Mutation p.L230S 0.47 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 10 123843107 123843107 G A TACC2 Silent p.K364K 0.44 TCGA-FS-A4F0-06 10 129869092 129869092 C T PTPRE Silent p.I438I 0.43 TCGA-FS-A4F0-06 10 129914759 129914759 G A MKI67 Silent p.D132D 0.38 TCGA-FS-A4F0-06 10 131676055 131676055 G A EBF3 Missense_Mutation p.P205S 0.34 deleterious(0.01) benign(0.291) TCGA-FS-A4F0-06 10 133931028 133931028 G A JAKMIP3 Missense_Mutation p.E195K 0.50 deleterious(0.01) probably_damaging(0.947) TCGA-FS-A4F0-06 10 15879309 15879309 G A FAM188A Missense_Mutation p.S157L 0.43 tolerated(0.22) benign(0.129) TCGA-FS-A4F0-06 10 18828394 18828394 C T CACNB2 Missense_Mutation p.S575F 0.45 tolerated(0.7) benign(0.211) TCGA-FS-A4F0-06 10 24832931 24832931 C T KIAA1217 Missense_Mutation p.P1578S 0.46 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 10 37430843 37430843 C T ANKRD30A Nonsense_Mutation p.Q284* 0.46 TCGA-FS-A4F0-06 10 37505242 37505242 G A ANKRD30A Silent p.K945K 0.42 TCGA-FS-A4F0-06 10 50531240 50531240 G A C10orf71 Missense_Mutation p.G217E 0.44 tolerated(0.75) benign(0.315) TCGA-FS-A4F0-06 10 50531479 50531479 G A C10orf71 Missense_Mutation p.V297I 0.37 tolerated(0.83) benign(0.006) TCGA-FS-A4F0-06 10 50531480 50531480 T A C10orf71 Missense_Mutation p.V297D 0.37 tolerated(0.06) possibly_damaging(0.668) TCGA-FS-A4F0-06 10 5147813 5147813 G C AKR1C3 Missense_Mutation p.E291D 0.47 tolerated(0.06) benign(0.005) TCGA-FS-A4F0-06 10 64573723 64573723 G A EGR2 Silent p.D225D 0.49 TCGA-FS-A4F0-06 10 68280441 68280441 G A CTNNA3 Missense_Mutation p.H489Y 0.49 tolerated(0.05) benign(0.415) TCGA-FS-A4F0-06 10 73122388 73122388 G A SLC29A3 3'UTR 0.36 TCGA-FS-A4F0-06 10 75391900 75391900 C T MYOZ1 Missense_Mutation p.G230R 0.35 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F0-06 10 76855379 76855379 A T DUSP13 Missense_Mutation p.F166L 0.47 deleterious(0.01) probably_damaging(0.937) TCGA-FS-A4F0-06 10 7769001 7769001 G A ITIH2 Nonsense_Mutation p.W358* 0.47 TCGA-FS-A4F0-06 10 81316947 81316947 C T SFTPA2 3'UTR 0.46 TCGA-FS-A4F0-06 10 90983476 90983476 G A LIPA Missense_Mutation p.L263F 0.46 tolerated(0.19) possibly_damaging(0.795) TCGA-FS-A4F0-06 10 93742421 93742421 C T BTAF1 Missense_Mutation p.S709F 0.52 deleterious(0.02) benign(0.066) TCGA-FS-A4F0-06 10 94828205 94828205 C T CYP26C1 Silent p.S440S 0.46 TCGA-FS-A4F0-06 10 95147579 95147579 G A MYOF Missense_Mutation p.S558L 0.46 tolerated(0.08) benign(0.016) TCGA-FS-A4F0-06 10 96796873 96796873 G T CYP2C8 3'UTR 0.32 TCGA-FS-A4F0-06 11 102667484 102667484 C T MMP1 Missense_Mutation p.G179E 0.50 tolerated(0.05) benign(0.061) TCGA-FS-A4F0-06 11 106558200 106558200 C T GUCY1A2 3'UTR 0.51 TCGA-FS-A4F0-06 11 111594560 111594562 CCA - SIK2 In_Frame_Del p.P832del 0.51 TCGA-FS-A4F0-06 11 11470445 11470445 A G GALNT18 Missense_Mutation p.F92L 0.41 tolerated(0.19) benign(0.001) TCGA-FS-A4F0-06 11 117988685 117988685 G A TMPRSS4 3'UTR 0.46 TCGA-FS-A4F0-06 11 120745942 120745942 G A GRIK4 Missense_Mutation p.G385D 0.41 deleterious(0) benign(0.019) TCGA-FS-A4F0-06 11 121023723 121023723 C T TECTA Silent p.V1413V 0.42 TCGA-FS-A4F0-06 11 123508998 123508998 G A SCN3B Silent p.I160I 0.41 TCGA-FS-A4F0-06 11 124252580 124252580 G A OR8B2 Silent p.F220F 0.49 TCGA-FS-A4F0-06 11 124310604 124310604 G A OR8B8 Silent p.I126I 0.53 TCGA-FS-A4F0-06 11 125769686 125769686 G A HYLS1 Silent p.Q141Q 0.51 TCGA-FS-A4F0-06 11 17531289 17531289 G A USH1C Silent p.L543L 0.54 TCGA-FS-A4F0-06 11 19252297 19252297 G A E2F8 Missense_Mutation p.S384F 0.51 deleterious(0) possibly_damaging(0.775) TCGA-FS-A4F0-06 11 26538446 26538446 G A ANO3 Missense_Mutation p.E222K 0.43 deleterious(0) benign(0.297) TCGA-FS-A4F0-06 11 2981038 2981038 G A NAP1L4 Silent p.P236P 0.38 TCGA-FS-A4F0-06 11 30354525 30354525 C T ARL14EP Missense_Mutation p.T180I 0.46 tolerated(0.37) benign(0.003) TCGA-FS-A4F0-06 11 30354526 30354526 C T ARL14EP Silent p.T180T 0.47 TCGA-FS-A4F0-06 11 32413526 32413526 C T WT1 Missense_Mutation p.G475D 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F0-06 11 32636409 32636409 G A CCDC73 Silent p.S485S 0.29 TCGA-FS-A4F0-06 11 34121016 34121016 A C CAPRIN1 3'UTR 0.45 TCGA-FS-A4F0-06 11 36597850 36597850 C T RAG1 Missense_Mutation p.S999F 0.46 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FS-A4F0-06 11 4471472 4471472 C T OR52K2 Silent p.I301I 0.42 TCGA-FS-A4F0-06 11 45672405 45672405 G A CHST1 Silent p.I23I 0.43 TCGA-FS-A4F0-06 11 4608254 4608254 G A OR52I2 Missense_Mutation p.G71E 0.37 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F0-06 11 5020306 5020306 C T OR51L1 Missense_Mutation p.L32F 0.34 deleterious(0.01) benign(0.075) TCGA-FS-A4F0-06 11 51412010 51412010 T G OR4A5 Missense_Mutation p.H129P 0.44 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FS-A4F0-06 11 51515336 51515336 C T OR4C46 Missense_Mutation p.P19S 0.33 deleterious_low_confidence(0.04) benign(0.128) TCGA-FS-A4F0-06 11 51515337 51515337 C T OR4C46 Missense_Mutation p.P19L 0.33 tolerated_low_confidence(0.08) benign(0.049) TCGA-FS-A4F0-06 11 55033125 55033125 A T TRIM48 Missense_Mutation p.N170I 0.86 tolerated(0.18) benign(0.108) TCGA-FS-A4F0-06 11 55136266 55136266 C T OR4A15 Silent p.L303L 0.44 TCGA-FS-A4F0-06 11 55579128 55579128 C T OR5L1 Silent p.F62F 0.48 TCGA-FS-A4F0-06 11 55595173 55595173 C T OR5L2 Missense_Mutation p.S160L 0.49 tolerated(0.9) benign(0) TCGA-FS-A4F0-06 11 55703825 55703825 C T OR5I1 Missense_Mutation p.G18S 0.49 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F0-06 11 55735160 55735160 C T OR10AG1 Silent p.R260R 0.43 TCGA-FS-A4F0-06 11 55735212 55735212 A T OR10AG1 Missense_Mutation p.F243Y 0.46 tolerated(0.64) benign(0.067) TCGA-FS-A4F0-06 11 56309822 56309822 C T OR5M11 Silent p.L304L 0.31 TCGA-FS-A4F0-06 11 56431445 56431445 C T OR5AR1 Missense_Mutation p.S95F 0.49 tolerated(0.66) benign(0.073) TCGA-FS-A4F0-06 11 57379382 57379382 G A SERPING1 Missense_Mutation p.D408N 0.50 tolerated(0.11) benign(0.242) TCGA-FS-A4F0-06 11 57946977 57946977 C T OR9Q1 Missense_Mutation p.P21S 0.49 deleterious(0.02) benign(0.057) TCGA-FS-A4F0-06 11 57958364 57958364 C T OR9Q2 Silent p.T134T 0.52 TCGA-FS-A4F0-06 11 58034558 58034558 T A OR10W1 Missense_Mutation p.N258I 0.44 deleterious(0.01) benign(0.1) TCGA-FS-A4F0-06 11 60565956 60565956 C T MS4A10 Nonsense_Mutation p.Q231* 0.49 TCGA-FS-A4F0-06 11 65341036 65341036 C G FAM89B Missense_Mutation p.P165R 0.52 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A4F0-06 11 65635830 65635830 G A EFEMP2 Missense_Mutation p.H304Y 0.32 tolerated(0.55) benign(0.003) TCGA-FS-A4F0-06 11 66468511 66468511 C T SPTBN2 Missense_Mutation p.R1020Q 0.47 tolerated(0.7) benign(0.001) TCGA-FS-A4F0-06 11 75279845 75279845 C T SERPINH1 Missense_Mutation p.T231I 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 11 78440523 78440523 A G TENM4 Missense_Mutation p.F1102L 0.41 deleterious(0.05) benign(0.02) TCGA-FS-A4F0-06 11 78440650 78440650 C T TENM4 Missense_Mutation p.M1059I 0.41 tolerated(0.23) benign(0) TCGA-FS-A4F0-06 11 7981342 7981342 C G NLRP10 Missense_Mutation p.S606T 0.43 tolerated(1) benign(0) TCGA-FS-A4F0-06 11 85436858 85436858 C T SYTL2 Silent p.E214E 0.44 TCGA-FS-A4F0-06 11 88059601 88059601 C T CTSC Intron 0.37 TCGA-FS-A4F0-06 11 92532310 92532310 G A FAT3 Missense_Mutation p.R2044H 0.07 probably_damaging(1) TCGA-FS-A4F0-06 11 93834405 93834405 T A HEPHL1 Missense_Mutation p.F827I 0.48 deleterious(0) probably_damaging(0.985) TCGA-FS-A4F0-06 12 106632716 106632716 G A CKAP4 3'UTR 0.96 TCGA-FS-A4F0-06 12 108150664 108150664 T G PRDM4 Silent p.S30S 0.36 TCGA-FS-A4F0-06 12 112926910 112926910 G T PTPN11 Missense_Mutation p.Q510H 0.96 deleterious(0) probably_damaging(0.968) TCGA-FS-A4F0-06 12 117768407 117768407 C T NOS1 Silent p.G156G 0.96 TCGA-FS-A4F0-06 12 1702919 1702919 T A FBXL14 Missense_Mutation p.D105V 0.46 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F0-06 12 18854660 18854660 C T PLCZ1 Silent p.K305K 0.64 TCGA-FS-A4F0-06 12 20766634 20766634 G A PDE3A Silent p.K423K 0.34 TCGA-FS-A4F0-06 12 20792884 20792884 T G PDE3A Missense_Mutation p.D748E 0.39 tolerated(0.17) benign(0.002) TCGA-FS-A4F0-06 12 25299953 25299953 T C CASC1 Missense_Mutation p.N224S 0.49 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 12 27553480 27553480 C T ARNTL2 Silent p.F311F 0.34 TCGA-FS-A4F0-06 12 28116538 28116538 C T PTHLH Silent p.K89K 0.42 TCGA-FS-A4F0-06 12 33559744 33559744 C T SYT10 Missense_Mutation p.D353N 0.47 deleterious(0.04) probably_damaging(0.998) TCGA-FS-A4F0-06 12 33559853 33559853 G A SYT10 Silent p.F316F 0.45 TCGA-FS-A4F0-06 12 43777646 43777646 G A ADAMTS20 Silent p.D1529D 0.43 TCGA-FS-A4F0-06 12 45567149 45567149 G A PLEKHA8P1 RNA 0.44 TCGA-FS-A4F0-06 12 48920207 48920207 G A OR8S1 Missense_Mutation p.G265S 0.45 tolerated(0.1) benign(0.393) TCGA-FS-A4F0-06 12 48920208 48920208 G A OR8S1 Missense_Mutation p.G265D 0.45 tolerated(0.09) benign(0.33) TCGA-FS-A4F0-06 12 49391192 49391192 G A DDN Silent p.S489S 0.43 TCGA-FS-A4F0-06 12 49445855 49445855 G A KMT2D Silent p.S537S 0.44 TCGA-FS-A4F0-06 12 52845880 52845880 G C KRT6B 5'UTR 0.44 TCGA-FS-A4F0-06 12 53607979 53607979 A C RARG Missense_Mutation p.L226R 0.52 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F0-06 12 53715228 53715228 G A AAAS Missense_Mutation p.P8S 0.45 tolerated(0.12) possibly_damaging(0.695) TCGA-FS-A4F0-06 12 54106714 54106714 G A CALCOCO1 Intron 0.40 TCGA-FS-A4F0-06 12 55846582 55846582 G A OR6C2 Silent p.Q195Q 0.50 TCGA-FS-A4F0-06 12 56075783 56075783 G A METTL7B Missense_Mutation p.G82E 0.55 deleterious(0.01) probably_damaging(0.993) TCGA-FS-A4F0-06 12 56295778 56295778 C T WIBG Missense_Mutation p.E165K 0.42 deleterious(0) possibly_damaging(0.804) TCGA-FS-A4F0-06 12 6647342 6647342 C T GAPDH 3'UTR 0.53 TCGA-FS-A4F0-06 12 79611462 79611462 C T SYT1 Missense_Mutation p.P55S 0.91 tolerated(0.07) probably_damaging(0.999) TCGA-FS-A4F0-06 12 80615990 80615990 G A OTOGL Missense_Mutation p.D143N 0.91 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4F0-06 12 80752049 80752049 C T OTOGL Missense_Mutation p.P2005L 0.88 deleterious(0.04) benign(0.029) TCGA-FS-A4F0-06 12 8330144 8330144 G A ZNF705A Missense_Mutation p.G290R 0.20 tolerated(0.05) benign(0.005) TCGA-FS-A4F0-06 12 8330145 8330145 G A ZNF705A Missense_Mutation p.G290E 0.20 deleterious(0.03) benign(0.202) TCGA-FS-A4F0-06 12 91546920 91546920 G A DCN Silent p.I233I 0.95 TCGA-FS-A4F0-06 12 9265097 9265097 G A A2M Silent p.F102F 0.51 TCGA-FS-A4F0-06 13 101890181 101890181 G A NALCN Silent p.F453F 0.46 TCGA-FS-A4F0-06 13 32835912 32835912 G T FRY Nonsense_Mutation p.E2526* 0.30 TCGA-FS-A4F0-06 13 33344516 33344516 A C PDS5B Silent p.P1294P 0.49 TCGA-FS-A4F0-06 13 33703873 33703873 G A STARD13 Missense_Mutation p.S314L 0.43 tolerated(0.34) benign(0.001) TCGA-FS-A4F0-06 13 39587014 39587014 G A PROSER1 Missense_Mutation p.S792F 0.39 deleterious(0.04) possibly_damaging(0.851) TCGA-FS-A4F0-06 13 52332429 52332429 T G WDFY2 Missense_Mutation p.V389G 0.55 deleterious(0) possibly_damaging(0.536) TCGA-FS-A4F0-06 13 52676350 52676350 G A NEK5 Missense_Mutation p.R230C 0.39 tolerated(0.14) benign(0.009) TCGA-FS-A4F0-06 14 105054644 105054644 G A C14orf180 Missense_Mutation p.R92K 0.44 tolerated(1) benign(0) TCGA-FS-A4F0-06 14 106805665 106805665 G A IGHV4-31 5'UTR 0.38 TCGA-FS-A4F0-06 14 19378271 19378271 C T OR11H12 Silent p.F226F 0.21 TCGA-FS-A4F0-06 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FS-A4F0-06 14 20020263 20020263 C T POTEM 5'UTR 0.14 TCGA-FS-A4F0-06 14 20612023 20612023 C T OR4N5 Silent p.F43F 0.51 TCGA-FS-A4F0-06 14 20612572 20612572 G A OR4N5 Silent p.R226R 0.49 TCGA-FS-A4F0-06 14 21794020 21794020 G A RPGRIP1 Missense_Mutation p.E800K 0.41 deleterious(0.02) possibly_damaging(0.896) TCGA-FS-A4F0-06 14 21820675 21820675 C T SUPT16H 3'UTR 0.49 TCGA-FS-A4F0-06 14 21820676 21820676 C T SUPT16H 3'UTR 0.49 TCGA-FS-A4F0-06 14 22447294 22447294 C T TRAV8-6 Missense_Mutation p.S92F 0.35 deleterious(0) possibly_damaging(0.876) TCGA-FS-A4F0-06 14 23598974 23598974 T C SLC7A8 Missense_Mutation p.D383G 0.52 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 14 24528521 24528521 C T LRRC16B Missense_Mutation p.R557C 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-FS-A4F0-06 14 33014437 33014437 G A AKAP6 Missense_Mutation p.G193D 0.39 tolerated(0.92) benign(0.082) TCGA-FS-A4F0-06 14 58785519 58785519 C T ARID4A Missense_Mutation p.P149S 0.35 tolerated(0.08) probably_damaging(0.968) TCGA-FS-A4F0-06 14 60193679 60193679 G A RTN1 Missense_Mutation p.P575S 0.61 tolerated(0.24) benign(0.004) TCGA-FS-A4F0-06 14 61439185 61439185 G A TRMT5 3'UTR 0.57 TCGA-FS-A4F0-06 14 68274242 68274242 G A ZFYVE26 Silent p.P253P 0.46 TCGA-FS-A4F0-06 14 68934949 68934949 G A RAD51B Missense_Mutation p.E340K 0.48 tolerated(0.1) possibly_damaging(0.876) TCGA-FS-A4F0-06 14 72054918 72054918 C T SIPA1L1 Missense_Mutation p.S110F 0.41 tolerated(0.22) possibly_damaging(0.687) TCGA-FS-A4F0-06 14 73029232 73029232 C T RGS6 3'Flank 0.56 TCGA-FS-A4F0-06 14 74824579 74824579 C T VRTN Missense_Mutation p.P365S 0.39 tolerated(0.21) benign(0.006) TCGA-FS-A4F0-06 14 88477276 88477276 A C GPR65 Missense_Mutation p.I29L 0.47 tolerated(0.38) benign(0.17) TCGA-FS-A4F0-06 14 99968710 99968710 G A CCNK Missense_Mutation p.E248K 0.59 deleterious(0.03) probably_damaging(1) TCGA-FS-A4F0-06 15 25446284 25446284 C T SNORD115-19 5'Flank 0.29 TCGA-FS-A4F0-06 15 25470229 25470229 C T SNORD115-27 3'Flank 0.47 TCGA-FS-A4F0-06 15 33876638 33876638 C T RYR3 Missense_Mutation p.S539F 0.32 probably_damaging(0.993) TCGA-FS-A4F0-06 15 35083365 35083365 G A ACTC1 Missense_Mutation p.R314C 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F0-06 15 41149304 41149304 C T SPINT1 3'UTR 0.66 TCGA-FS-A4F0-06 15 42171543 42171543 C T SPTBN5 Missense_Mutation p.D1033N 0.33 possibly_damaging(0.57) TCGA-FS-A4F0-06 15 45052046 45052046 G A TRIM69 Missense_Mutation p.E313K 0.34 tolerated(0.06) benign(0.303) TCGA-FS-A4F0-06 15 54025314 54025314 C T WDR72 Nonsense_Mutation p.W11* 0.46 TCGA-FS-A4F0-06 15 54707203 54707203 G A UNC13C Missense_Mutation p.G1624E 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F0-06 15 63349244 63349244 C T TPM1 Missense_Mutation p.R101C 0.40 deleterious(0.02) probably_damaging(1) TCGA-FS-A4F0-06 15 63948502 63948502 G A HERC1 Nonsense_Mutation p.R3219* 0.49 TCGA-FS-A4F0-06 15 63948503 63948503 G A HERC1 Silent p.I3218I 0.50 TCGA-FS-A4F0-06 15 65347222 65347222 C T RASL12 3'UTR 0.48 TCGA-FS-A4F0-06 15 65917410 65917410 G A SLC24A1 Missense_Mutation p.S331N 0.55 possibly_damaging(0.483) TCGA-FS-A4F0-06 15 72252254 72252254 G A MYO9A Missense_Mutation p.H724Y 0.44 deleterious(0.04) benign(0.154) TCGA-FS-A4F0-06 15 74560799 74560799 G A CCDC33 Silent p.E182E 0.60 TCGA-FS-A4F0-06 15 74565197 74565197 G A CCDC33 Missense_Mutation p.D242N 0.48 deleterious(0.04) possibly_damaging(0.908) TCGA-FS-A4F0-06 15 74623549 74623549 C T CCDC33 Silent p.I561I 0.49 TCGA-FS-A4F0-06 15 75693113 75693113 G A SIN3A Silent p.Y565Y 0.42 TCGA-FS-A4F0-06 15 79069913 79069913 C T ADAMTS7 Missense_Mutation p.C447Y 0.46 deleterious(0) possibly_damaging(0.524) TCGA-FS-A4F0-06 15 89400692 89400692 C T ACAN Missense_Mutation p.P1626S 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F0-06 15 90794092 90794092 G A TTLL13 Missense_Mutation p.G77E 0.43 deleterious(0.01) benign(0.318) TCGA-FS-A4F0-06 15 90794093 90794093 G A TTLL13 Silent p.G77G 0.43 TCGA-FS-A4F0-06 15 94899508 94899508 G A MCTP2 Missense_Mutation p.G383E 0.48 deleterious(0) probably_damaging(0.986) TCGA-FS-A4F0-06 16 10032081 10032081 G A GRIN2A Missense_Mutation p.L248F 0.39 deleterious(0) probably_damaging(0.983) TCGA-FS-A4F0-06 16 11363088 11363088 G A TNP2 Missense_Mutation p.T11I 0.47 deleterious(0) possibly_damaging(0.803) TCGA-FS-A4F0-06 16 1261797 1261797 G A CACNA1H Missense_Mutation p.D1520N 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4F0-06 16 14742418 14742418 C T BFAR Missense_Mutation p.S146F 0.43 deleterious(0) possibly_damaging(0.894) TCGA-FS-A4F0-06 16 14742419 14742419 C T BFAR Silent p.S146S 0.43 TCGA-FS-A4F0-06 16 150367 150367 T C NPRL3 Intron 0.47 TCGA-FS-A4F0-06 16 15835403 15835403 C A MYH11 Nonsense_Mutation p.E933* 0.41 TCGA-FS-A4F0-06 16 19451300 19451300 C T TMC5 5'UTR 0.40 TCGA-FS-A4F0-06 16 20043447 20043447 C T GPR139 Silent p.G224G 0.42 TCGA-FS-A4F0-06 16 20975860 20975860 C T DNAH3 Missense_Mutation p.E3116K 0.47 deleterious(0) probably_damaging(0.985) TCGA-FS-A4F0-06 16 21063074 21063074 G A DNAH3 Silent p.I1385I 0.42 TCGA-FS-A4F0-06 16 23080528 23080528 C G USP31 Missense_Mutation p.Q966H 0.47 tolerated_low_confidence(0.55) benign(0.001) TCGA-FS-A4F0-06 16 23702456 23702456 C T ERN2 Silent p.R902R 0.41 TCGA-FS-A4F0-06 16 23706524 23706524 C T ERN2 Silent p.Q647Q 0.42 TCGA-FS-A4F0-06 16 24104109 24104109 C T PRKCB Intron 0.37 TCGA-FS-A4F0-06 16 29820178 29820178 C T MAZ Intron 0.79 TCGA-FS-A4F0-06 16 449673 449673 G A NME4 Missense_Mutation p.G125E 0.53 deleterious(0.01) probably_damaging(0.984) TCGA-FS-A4F0-06 16 48145687 48145687 C T ABCC12 Silent p.K708K 0.44 TCGA-FS-A4F0-06 16 48296726 48296726 C G LONP2 Missense_Mutation p.L309V 0.59 tolerated(0.73) benign(0.221) TCGA-FS-A4F0-06 16 49412388 49412388 G A C16orf78 Missense_Mutation p.G93E 0.53 tolerated(0.29) benign(0.029) TCGA-FS-A4F0-06 16 49671389 49671389 G A ZNF423 Silent p.S558S 0.42 TCGA-FS-A4F0-06 16 49671390 49671390 G A ZNF423 Missense_Mutation p.S558F 0.42 deleterious(0.03) possibly_damaging(0.905) TCGA-FS-A4F0-06 16 51175717 51175717 G A SALL1 Missense_Mutation p.T139I 0.36 tolerated(0.2) benign(0.018) TCGA-FS-A4F0-06 16 56904538 56904538 G A SLC12A3 Missense_Mutation p.E248K 0.32 tolerated(0.06) possibly_damaging(0.885) TCGA-FS-A4F0-06 16 56947240 56947240 C T SLC12A3 Silent p.L1006L 0.47 TCGA-FS-A4F0-06 16 57060214 57060214 C T NLRC5 Silent p.P453P 0.44 TCGA-FS-A4F0-06 16 57075478 57075478 C T NLRC5 Silent p.L1007L 0.39 TCGA-FS-A4F0-06 16 57075479 57075479 C T NLRC5 Missense_Mutation p.H1008Y 0.37 deleterious(0) benign(0.166) TCGA-FS-A4F0-06 16 67304817 67304817 G T SLC9A5 Nonsense_Mutation p.E799* 0.45 TCGA-FS-A4F0-06 16 71019201 71019201 C T HYDIN Missense_Mutation p.E1407K 0.32 probably_damaging(0.953) TCGA-FS-A4F0-06 16 71509888 71509888 G A ZNF19 Missense_Mutation p.P188S 0.44 tolerated(0.07) benign(0.074) TCGA-FS-A4F0-06 16 72055179 72055179 G A DHODH Missense_Mutation p.G225E 0.45 deleterious(0.02) possibly_damaging(0.907) TCGA-FS-A4F0-06 16 7382944 7382944 C T RBFOX1 5'UTR 0.47 TCGA-FS-A4F0-06 16 77759444 77759444 G A NUDT7 Missense_Mutation p.G51E 0.48 tolerated(0.15) probably_damaging(0.932) TCGA-FS-A4F0-06 16 85721084 85721084 G A GINS2 Missense_Mutation p.P63S 0.47 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F0-06 16 8719386 8719386 C T METTL22 5'UTR 0.56 TCGA-FS-A4F0-06 16 89246691 89246691 C T CDH15 Silent p.F95F 0.45 TCGA-FS-A4F0-06 16 920808 920808 T G LMF1 Missense_Mutation p.N385H 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 17 10547980 10547980 G A MYH3 Missense_Mutation p.S394L 0.41 deleterious(0.02) benign(0.105) TCGA-FS-A4F0-06 17 16722584 16722584 G A AC022596.6 RNA 0.28 TCGA-FS-A4F0-06 17 19317818 19317818 G A RNF112 Silent p.Q311Q 0.47 TCGA-FS-A4F0-06 17 21476991 21476991 C T AC138710.1 5'Flank 0.45 TCGA-FS-A4F0-06 17 2278814 2278814 C T SGSM2 Missense_Mutation p.P710L 0.48 tolerated(0.1) benign(0.023) TCGA-FS-A4F0-06 17 2278815 2278815 C T SGSM2 Silent p.P710P 0.47 TCGA-FS-A4F0-06 17 26084238 26084238 C T NOS2 3'UTR 0.50 TCGA-FS-A4F0-06 17 2699828 2699828 G A RAP1GAP2 Missense_Mutation p.G3S 0.58 tolerated(0.56) benign(0.003) TCGA-FS-A4F0-06 17 35346687 35346687 C T AATF Missense_Mutation p.P431S 0.44 tolerated(0.07) benign(0.04) TCGA-FS-A4F0-06 17 39553664 39553664 T C KRT31 Missense_Mutation p.N43S 0.44 tolerated(1) benign(0.002) TCGA-FS-A4F0-06 17 39622142 39622142 G C KRT32 Silent p.A197A 0.50 TCGA-FS-A4F0-06 17 40025766 40025766 G A ACLY Silent p.L1004L 0.43 TCGA-FS-A4F0-06 17 40379652 40379652 G A STAT5B Silent p.L60L 0.46 TCGA-FS-A4F0-06 17 44954055 44954055 G A WNT9B Missense_Mutation p.E349K 0.34 tolerated(0.37) possibly_damaging(0.45) TCGA-FS-A4F0-06 17 45266512 45266512 C T CDC27 Silent p.Q9Q 0.45 TCGA-FS-A4F0-06 17 4536493 4536493 T C ALOX15 Missense_Mutation p.K456E 0.60 tolerated(0.26) benign(0.019) TCGA-FS-A4F0-06 17 45534151 45534151 G A MRPL45P2 RNA 0.20 TCGA-FS-A4F0-06 17 4701364 4701364 G A PSMB6 Missense_Mutation p.G165R 0.44 deleterious(0) probably_damaging(0.979) TCGA-FS-A4F0-06 17 4701365 4701365 G A PSMB6 Missense_Mutation p.G165E 0.45 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F0-06 17 4805556 4805556 G A CHRNE Silent p.V100V 0.45 TCGA-FS-A4F0-06 17 48266759 48266759 G A COL1A1 Silent p.S936S 0.51 TCGA-FS-A4F0-06 17 4842408 4842408 G A SLC25A11 Silent p.F65F 0.50 TCGA-FS-A4F0-06 17 5045411 5045411 G A USP6 Missense_Mutation p.G563R 0.54 tolerated_low_confidence(0.1) probably_damaging(0.968) TCGA-FS-A4F0-06 17 5286422 5286422 G A RABEP1 Silent p.Q831Q 0.39 TCGA-FS-A4F0-06 17 56271403 56271403 C T EPX Missense_Mutation p.P182S 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 17 56386309 56386309 G A BZRAP1 Nonsense_Mutation p.R1442* 0.46 TCGA-FS-A4F0-06 17 57287389 57287389 G A SMG8 5'UTR 0.96 TCGA-FS-A4F0-06 17 61864432 61864432 C T DDX42 Missense_Mutation p.P8L 0.46 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-FS-A4F0-06 17 61988612 61988612 G A CSHL1 5'Flank 0.61 TCGA-FS-A4F0-06 17 6367078 6367078 G A PITPNM3 Silent p.V760V 0.40 TCGA-FS-A4F0-06 17 6493211 6493211 G A KIAA0753 Missense_Mutation p.P892S 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-FS-A4F0-06 17 72773476 72773476 G A TMEM104 Missense_Mutation p.G3S 0.44 tolerated(0.08) benign(0.316) TCGA-FS-A4F0-06 17 76167914 76167914 C T SYNGR2 Missense_Mutation p.A191V 0.48 tolerated(0.07) benign(0.011) TCGA-FS-A4F0-06 17 7661865 7661865 C T DNAH2 Missense_Mutation p.R702W 0.47 probably_damaging(0.987) TCGA-FS-A4F0-06 17 79031757 79031757 C T BAIAP2 Silent p.S69S 0.52 TCGA-FS-A4F0-06 17 80047256 80047256 G A FASN Missense_Mutation p.P657L 0.44 tolerated(0.08) benign(0.001) TCGA-FS-A4F0-06 17 80047257 80047257 G A FASN Missense_Mutation p.P657S 0.42 tolerated(0.6) benign(0) TCGA-FS-A4F0-06 17 8224328 8224328 G A ARHGEF15 3'UTR 0.48 TCGA-FS-A4F0-06 17 9737190 9737190 G A GLP2R Missense_Mutation p.D86N 0.54 tolerated(0.61) possibly_damaging(0.482) TCGA-FS-A4F0-06 18 13826480 13826480 C T MC5R Missense_Mutation p.T239I 0.46 deleterious(0.01) benign(0.192) TCGA-FS-A4F0-06 18 13885332 13885332 G A MC2R Silent p.F62F 0.47 TCGA-FS-A4F0-06 18 21125051 21125051 C G NPC1 Missense_Mutation p.R607P 0.50 deleterious(0) possibly_damaging(0.88) TCGA-FS-A4F0-06 18 22804495 22804495 C A ZNF521 Silent p.G1129G 0.55 TCGA-FS-A4F0-06 18 28725708 28725708 G A DSC1 Missense_Mutation p.L269F 0.46 deleterious(0.01) possibly_damaging(0.78) TCGA-FS-A4F0-06 18 28972252 28972252 C T DSG4 Silent p.F318F 0.47 TCGA-FS-A4F0-06 18 2931394 2931394 G A LPIN2 Missense_Mutation p.S439F 0.51 deleterious(0.01) probably_damaging(0.931) TCGA-FS-A4F0-06 18 59212317 59212317 T A CDH20 Missense_Mutation p.Y530N 0.37 tolerated(0.08) benign(0.435) TCGA-FS-A4F0-06 18 61627405 61627405 C T HMSD Missense_Mutation p.S79F 0.36 deleterious(0) possibly_damaging(0.88) TCGA-FS-A4F0-06 19 10100153 10100153 C T COL5A3 Missense_Mutation p.G680S 0.38 unknown(0) TCGA-FS-A4F0-06 19 10230561 10230561 C T EIF3G 5'UTR 0.48 TCGA-FS-A4F0-06 19 11833391 11833391 G A ZNF823 Nonsense_Mutation p.R320* 0.53 TCGA-FS-A4F0-06 19 11943126 11943126 C T ZNF440 Missense_Mutation p.H379Y 0.46 tolerated(1) benign(0.007) TCGA-FS-A4F0-06 19 1254187 1254187 C T MIDN Missense_Mutation p.R136C 0.45 deleterious(0) probably_damaging(0.988) TCGA-FS-A4F0-06 19 1279077 1279077 C A C19orf24 3'UTR 0.43 TCGA-FS-A4F0-06 19 1279078 1279078 C T C19orf24 3'UTR 0.44 TCGA-FS-A4F0-06 19 14580766 14580772 CGTCAAG TGTC PKN1 In_Frame_Del p.K761del 0.25 TCGA-FS-A4F0-06 19 14581614 14581614 G A PKN1 Missense_Mutation p.G865E 0.46 deleterious(0) probably_damaging(0.982) TCGA-FS-A4F0-06 19 15134029 15134029 C T CCDC105 3'UTR 0.62 TCGA-FS-A4F0-06 19 15234334 15234334 C T ILVBL Silent p.R63R 0.34 TCGA-FS-A4F0-06 19 15234335 15234335 C T ILVBL Missense_Mutation p.R63K 0.34 tolerated(1) benign(0.002) TCGA-FS-A4F0-06 19 16874664 16874664 C T NWD1 Missense_Mutation p.S720L 0.46 deleterious(0) probably_damaging(0.991) TCGA-FS-A4F0-06 19 17132982 17132982 C T CPAMD8 Silent p.L81L 0.44 TCGA-FS-A4F0-06 19 17729310 17729310 C T UNC13A Missense_Mutation p.D1444N 0.27 deleterious(0.02) possibly_damaging(0.612) TCGA-FS-A4F0-06 19 17899181 17899181 C T FCHO1 3'UTR 0.23 TCGA-FS-A4F0-06 19 18304781 18304781 C T MPV17L2 Missense_Mutation p.L99F 0.40 tolerated(0.17) benign(0.03) TCGA-FS-A4F0-06 19 22940573 22940573 G A ZNF99 Missense_Mutation p.A713V 0.39 tolerated(0.14) possibly_damaging(0.55) TCGA-FS-A4F0-06 19 22941785 22941785 C T ZNF99 Missense_Mutation p.G309E 0.47 deleterious(0.02) possibly_damaging(0.829) TCGA-FS-A4F0-06 19 22941786 22941786 C T ZNF99 Missense_Mutation p.G309R 0.46 deleterious(0.03) possibly_damaging(0.879) TCGA-FS-A4F0-06 19 23159244 23159244 G A ZNF728 Missense_Mutation p.L299F 0.41 tolerated(0.08) possibly_damaging(0.491) TCGA-FS-A4F0-06 19 33597613 33597613 C T GPATCH1 Missense_Mutation p.P365S 0.37 deleterious(0) probably_damaging(0.977) TCGA-FS-A4F0-06 19 34981377 34981377 C T WTIP Missense_Mutation p.S255L 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A4F0-06 19 3544627 3544627 G A MFSD12 Intron 0.42 TCGA-FS-A4F0-06 19 36322274 36322274 C T NPHS1 Splice_Site p.X1104_splice 0.46 TCGA-FS-A4F0-06 19 39589226 39589226 G A PAPL Missense_Mutation p.G84R 0.52 deleterious(0.02) probably_damaging(0.98) TCGA-FS-A4F0-06 19 40362890 40362890 G A FCGBP Silent p.F5060F 0.45 TCGA-FS-A4F0-06 19 42265904 42265904 C T CEACAM6 Missense_Mutation p.P244L 0.37 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F0-06 19 43093796 43093796 C T CEACAM8 Silent p.Q172Q 0.49 TCGA-FS-A4F0-06 19 43244628 43244628 C T PSG3 5'UTR 0.56 TCGA-FS-A4F0-06 19 45016928 45016928 G A CEACAM20 Intron 0.30 TCGA-FS-A4F0-06 19 4512428 4512428 C T PLIN4 Missense_Mutation p.G501E 0.49 tolerated(0.1) possibly_damaging(0.607) TCGA-FS-A4F0-06 19 45262921 45262921 C T BCL3 3'UTR 0.45 TCGA-FS-A4F0-06 19 45783846 45783846 G A MARK4 Missense_Mutation p.R377Q 0.54 tolerated(0.14) probably_damaging(0.953) TCGA-FS-A4F0-06 19 4704146 4704146 G T DPP9 Missense_Mutation p.F199L 0.43 tolerated(0.16) benign(0.074) TCGA-FS-A4F0-06 19 50189967 50189967 C T PRMT1 Missense_Mutation p.P339L 0.39 deleterious(0.01) benign(0.146) TCGA-FS-A4F0-06 19 50804961 50804961 C T MYH14 Missense_Mutation p.S1838L 0.46 tolerated(0.35) benign(0.03) TCGA-FS-A4F0-06 19 51728627 51728627 G A CD33 Missense_Mutation p.G64E 0.48 tolerated(0.14) possibly_damaging(0.855) TCGA-FS-A4F0-06 19 51986339 51986339 G A CEACAM18 Missense_Mutation p.G309S 0.45 tolerated(0.05) probably_damaging(0.96) TCGA-FS-A4F0-06 19 51986340 51986340 G A CEACAM18 Missense_Mutation p.G309D 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A4F0-06 19 51986374 51986374 C T CEACAM18 Silent p.S320S 0.49 TCGA-FS-A4F0-06 19 52130747 52130747 C T SIGLEC5 Missense_Mutation p.G417E 0.46 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A4F0-06 19 53644911 53644911 G A ZNF347 Silent p.I391I 0.48 TCGA-FS-A4F0-06 19 53770445 53770445 G A VN1R4 Silent p.I158I 0.45 TCGA-FS-A4F0-06 19 55107288 55107288 C T LILRA1 Silent p.F282F 0.48 TCGA-FS-A4F0-06 19 55220849 55220849 C T AC098784.2 3'Flank 0.40 TCGA-FS-A4F0-06 19 55420723 55420723 G A NCR1 Missense_Mutation p.G159R 0.43 deleterious(0.02) benign(0.21) TCGA-FS-A4F0-06 19 56599507 56599507 G A ZNF787 Missense_Mutation p.S345L 0.42 deleterious(0.04) benign(0.043) TCGA-FS-A4F0-06 19 57334138 57334138 G A PEG3 Missense_Mutation p.T183I 0.43 tolerated(0.08) benign(0.215) TCGA-FS-A4F0-06 19 58153572 58153572 C T ZNF211 3'UTR 0.45 TCGA-FS-A4F0-06 19 6937404 6937404 C T EMR1 Silent p.H844H 0.45 TCGA-FS-A4F0-06 19 7573220 7573220 C T C19orf45 Silent p.F474F 0.35 TCGA-FS-A4F0-06 19 9077822 9077822 G A MUC16 Silent p.I3208I 0.43 TCGA-FS-A4F0-06 19 9677524 9677524 C T ZNF121 Missense_Mutation p.E89K 0.38 tolerated(0.18) benign(0.047) TCGA-FS-A4F0-06 1 1019419 1019419 G A C1orf159 Intron 0.50 TCGA-FS-A4F0-06 1 10684462 10684462 C T PEX14 Nonsense_Mutation p.Q185* 0.45 TCGA-FS-A4F0-06 1 110255296 110255296 G A GSTM5 Silent p.K31K 0.48 TCGA-FS-A4F0-06 1 110255567 110255567 G A GSTM5 Intron 0.38 TCGA-FS-A4F0-06 1 11090879 11090879 G A MASP2 Missense_Mutation p.P383L 0.47 tolerated(0.18) benign(0.153) TCGA-FS-A4F0-06 1 115218614 115218614 G A AMPD1 Missense_Mutation p.R500C 0.47 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 1 117564249 117564249 C T CD101 Missense_Mutation p.S691F 0.54 deleterious(0) benign(0.411) TCGA-FS-A4F0-06 1 120293520 120293520 G A HMGCS2 Missense_Mutation p.P478S 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 1 12887250 12887250 C T PRAMEF11 Missense_Mutation p.D203N 0.42 tolerated(0.11) possibly_damaging(0.703) TCGA-FS-A4F0-06 1 12907643 12907643 C T HNRNPCL1 Missense_Mutation p.R167Q 0.39 tolerated(0.25) benign(0.003) TCGA-FS-A4F0-06 1 12952767 12952767 C T PRAMEF10 Missense_Mutation p.D469N 0.46 tolerated(0.05) possibly_damaging(0.627) TCGA-FS-A4F0-06 1 144873951 144873951 G A PDE4DIP Missense_Mutation p.A1669V 0.18 tolerated(0.15) benign(0.05) TCGA-FS-A4F0-06 1 150620935 150620935 G A GOLPH3L Silent p.S240S 0.61 TCGA-FS-A4F0-06 1 151786020 151786020 C T RORC Missense_Mutation p.R337K 0.29 deleterious(0.01) possibly_damaging(0.864) TCGA-FS-A4F0-06 1 152284339 152284339 G A FLG Missense_Mutation p.P1008L 0.30 possibly_damaging(0.573) TCGA-FS-A4F0-06 1 152287136 152287136 G A FLG Silent p.L76L 0.30 TCGA-FS-A4F0-06 1 155147898 155147898 C T TRIM46 Missense_Mutation p.P34S 0.62 deleterious(0) possibly_damaging(0.822) TCGA-FS-A4F0-06 1 155313166 155313166 G A ASH1L Silent p.I2744I 0.58 TCGA-FS-A4F0-06 1 155630810 155630810 A T YY1AP1 Intron 0.48 TCGA-FS-A4F0-06 1 155989821 155989821 G A SSR2 Silent p.I46I 0.26 TCGA-FS-A4F0-06 1 156877842 156877842 C T PEAR1 Missense_Mutation p.R301W 0.25 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F0-06 1 157497461 157497461 C T FCRL5 Missense_Mutation p.A636T 0.26 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F0-06 1 157497462 157497462 C T FCRL5 Silent p.E635E 0.26 TCGA-FS-A4F0-06 1 157666952 157666952 C T FCRL3 Silent p.L274L 0.44 TCGA-FS-A4F0-06 1 158435982 158435982 C T OR10K1 Silent p.L211L 0.61 TCGA-FS-A4F0-06 1 159284199 159284199 G A OR10J3 Missense_Mutation p.S84F 0.33 tolerated(0.55) benign(0.019) TCGA-FS-A4F0-06 1 160160618 160160618 G A CASQ1 Missense_Mutation p.G26E 0.29 tolerated(0.26) probably_damaging(0.993) TCGA-FS-A4F0-06 1 162337219 162337219 G A NOS1AP Missense_Mutation p.E495K 0.43 tolerated_low_confidence(0.55) benign(0.076) TCGA-FS-A4F0-06 1 1684175 1684175 A G NADK 3'UTR 0.58 TCGA-FS-A4F0-06 1 169388366 169388366 T C CCDC181 Missense_Mutation p.E367G 0.27 tolerated(0.08) possibly_damaging(0.834) TCGA-FS-A4F0-06 1 169576219 169576219 C T SELP Missense_Mutation p.G496E 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 1 172389923 172389923 G A C1orf105 5'UTR 0.36 TCGA-FS-A4F0-06 1 17326773 17326773 G A ATP13A2 Missense_Mutation p.S292F 0.53 tolerated(0.57) possibly_damaging(0.722) TCGA-FS-A4F0-06 1 183521048 183521048 C T SMG7 Intron 0.31 TCGA-FS-A4F0-06 1 18691758 18691758 C T IGSF21 Silent p.P194P 0.43 TCGA-FS-A4F0-06 1 19449393 19449393 G A UBR4 Silent p.F3250F 0.39 TCGA-FS-A4F0-06 1 196648897 196648897 G A CFH Missense_Mutation p.G255E 0.35 deleterious(0.05) probably_damaging(0.943) TCGA-FS-A4F0-06 1 196762513 196762513 G A CFHR3 Missense_Mutation p.R288K 0.41 tolerated(1) benign(0.046) TCGA-FS-A4F0-06 1 196799769 196799769 A C CFHR1 Silent p.I249I 0.44 TCGA-FS-A4F0-06 1 196953113 196953113 G A CFHR5 Silent p.V92V 0.44 TCGA-FS-A4F0-06 1 201453892 201453892 G A CSRP1 Silent p.P177P 0.53 TCGA-FS-A4F0-06 1 201453893 201453893 G A CSRP1 Missense_Mutation p.P177L 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F0-06 1 21071422 21071422 T C HP1BP3 Silent p.R510R 0.49 TCGA-FS-A4F0-06 1 212799742 212799742 C T FAM71A Missense_Mutation p.S508F 0.55 tolerated(0.71) benign(0.018) TCGA-FS-A4F0-06 1 21573804 21573804 G A ECE1 Missense_Mutation p.P358L 0.42 tolerated(0.36) probably_damaging(0.935) TCGA-FS-A4F0-06 1 215844348 215844348 G A USH2A Missense_Mutation p.S4700F 0.43 benign(0.053) TCGA-FS-A4F0-06 1 216074106 216074106 C T USH2A Missense_Mutation p.G2481E 0.52 benign(0.003) TCGA-FS-A4F0-06 1 220300168 220300168 G C IARS2 Missense_Mutation p.W607S 0.44 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 1 223984185 223984185 G A TP53BP2 Missense_Mutation p.P686S 0.44 tolerated(0.67) benign(0.004) TCGA-FS-A4F0-06 1 223990458 223990458 G A TP53BP2 Missense_Mutation p.A324V 0.48 deleterious(0.03) possibly_damaging(0.459) TCGA-FS-A4F0-06 1 227221059 227221059 C T CDC42BPA Silent p.R1143R 0.49 TCGA-FS-A4F0-06 1 232619607 232619607 G T SIPA1L2 Missense_Mutation p.L638I 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A4F0-06 1 233314921 233314921 C T PCNXL2 Missense_Mutation p.E1023K 0.49 deleterious(0.02) benign(0.199) TCGA-FS-A4F0-06 1 233750043 233750043 C T KCNK1 Silent p.S42S 0.26 TCGA-FS-A4F0-06 1 234564992 234564992 G A TARBP1 Nonsense_Mutation p.Q984* 0.40 TCGA-FS-A4F0-06 1 235338498 235338498 C A ARID4B Splice_Site p.X1222_splice 0.43 TCGA-FS-A4F0-06 1 237765349 237765349 C T RYR2 Missense_Mutation p.P1541S 0.40 probably_damaging(1) TCGA-FS-A4F0-06 1 240072268 240072268 C T CHRM3 Missense_Mutation p.P506L 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 1 240975259 240975259 G A RGS7 Silent p.F347F 0.32 TCGA-FS-A4F0-06 1 24460811 24460811 G A IL22RA1 Missense_Mutation p.P141S 0.47 deleterious(0.01) possibly_damaging(0.804) TCGA-FS-A4F0-06 1 247265089 247265089 G A ZNF669 Silent p.S131S 0.23 TCGA-FS-A4F0-06 1 247320566 247320566 C T ZNF124 Intron 0.34 TCGA-FS-A4F0-06 1 247492775 247492775 G A ZNF496 Missense_Mutation p.P36S 0.35 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F0-06 1 247587615 247587615 C T NLRP3 Silent p.I290I 0.31 TCGA-FS-A4F0-06 1 247902144 247902144 C T OR14K1 Silent p.V76V 0.31 TCGA-FS-A4F0-06 1 247902145 247902145 C T OR14K1 Missense_Mutation p.P77S 0.30 deleterious(0.02) probably_damaging(0.934) TCGA-FS-A4F0-06 1 248028006 248028006 G A TRIM58 Splice_Site p.X173_splice 0.31 TCGA-FS-A4F0-06 1 248112944 248112944 G A OR2L8 Missense_Mutation p.R262K 0.29 tolerated(0.92) benign(0.012) TCGA-FS-A4F0-06 1 248224163 248224163 C T OR2L3 Silent p.F60F 0.28 TCGA-FS-A4F0-06 1 33958971 33958971 C T ZSCAN20 Silent p.L543L 0.48 TCGA-FS-A4F0-06 1 36564631 36564631 C T COL8A2 Silent p.G217G 0.35 TCGA-FS-A4F0-06 1 3683112 3683112 G A CCDC27 Missense_Mutation p.R489Q 0.33 deleterious(0) probably_damaging(0.987) TCGA-FS-A4F0-06 1 52903962 52903962 G A ZCCHC11 Missense_Mutation p.P1290S 0.40 deleterious(0) possibly_damaging(0.687) TCGA-FS-A4F0-06 1 56977694 56977694 T C PPAP2B Missense_Mutation p.D255G 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 1 57202788 57202788 C T C1orf168 Missense_Mutation p.D589N 0.43 tolerated(0.12) benign(0.121) TCGA-FS-A4F0-06 1 6204140 6204140 G A CHD5 Silent p.I626I 0.79 TCGA-FS-A4F0-06 1 7723941 7723941 C T CAMTA1 Missense_Mutation p.P445L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A4F0-06 1 7863183 7863183 C T PER3 Missense_Mutation p.R316C 0.34 deleterious(0.02) probably_damaging(0.965) TCGA-FS-A4F0-06 1 91841143 91841143 G A HFM1 Missense_Mutation p.L513F 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 1 91841144 91841144 G A HFM1 Silent p.T512T 0.44 TCGA-FS-A4F0-06 1 94057814 94057814 C T BCAR3 Intron 0.41 TCGA-FS-A4F0-06 20 1514968 1514968 C T SIRPD 3'UTR 0.46 TCGA-FS-A4F0-06 20 25056832 25056832 T G VSX1 3'UTR 0.47 TCGA-FS-A4F0-06 20 30584690 30584690 C T XKR7 Silent p.I390I 0.44 TCGA-FS-A4F0-06 20 3649516 3649516 G A ADAM33 3'UTR 0.50 TCGA-FS-A4F0-06 20 3649517 3649517 G A ADAM33 3'UTR 0.50 TCGA-FS-A4F0-06 20 39992463 39992463 T C EMILIN3 Missense_Mutation p.Y110C 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 20 40743865 40743865 C T PTPRT Missense_Mutation p.V1025I 0.39 tolerated(0.06) benign(0.104) TCGA-FS-A4F0-06 20 45224911 45224911 G A SLC13A3 Missense_Mutation p.R227C 0.38 deleterious(0.01) benign(0.082) TCGA-FS-A4F0-06 20 46268356 46268356 C T NCOA3 Missense_Mutation p.P915S 0.49 tolerated(0.24) benign(0.001) TCGA-FS-A4F0-06 20 47570302 47570302 C T ARFGEF2 Silent p.P271P 0.38 TCGA-FS-A4F0-06 20 48098603 48098603 G A KCNB1 Nonsense_Mutation p.Q139* 0.41 TCGA-FS-A4F0-06 20 50408716 50408716 G A SALL4 Silent p.I102I 0.54 TCGA-FS-A4F0-06 20 55108454 55108454 C T FAM209B Silent p.A19A 0.44 TCGA-FS-A4F0-06 20 61598678 61598678 C T SLC17A9 Intron 0.46 TCGA-FS-A4F0-06 20 62044897 62044897 C T KCNQ2 Missense_Mutation p.E557K 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-FS-A4F0-06 21 10907042 10907042 T A TPTE Splice_Site p.X507_splice 0.43 TCGA-FS-A4F0-06 21 10996046 10996046 G A TPTE RNA 0.23 TCGA-FS-A4F0-06 21 27945292 27945292 G A CYYR1 5'UTR 0.45 TCGA-FS-A4F0-06 21 37418233 37418233 G A SETD4 Missense_Mutation p.L125F 0.41 tolerated(0.13) benign(0.007) TCGA-FS-A4F0-06 21 38525559 38525559 C T TTC3 Nonsense_Mutation p.Q908* 0.42 TCGA-FS-A4F0-06 21 39672192 39672192 C T KCNJ15 Missense_Mutation p.P337S 0.52 tolerated(0.16) benign(0.002) TCGA-FS-A4F0-06 21 42080412 42080412 T A DSCAM Missense_Mutation p.K110I 0.52 deleterious(0.01) possibly_damaging(0.905) TCGA-FS-A4F0-06 21 43412459 43412459 C - ZBTB21 Frame_Shift_Del p.R583Gfs*18 0.32 TCGA-FS-A4F0-06 21 44188337 44188337 G A PDE9A Missense_Mutation p.E466K 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 21 45103231 45103231 G A RRP1B Missense_Mutation p.E290K 0.44 tolerated(0.2) benign(0.004) TCGA-FS-A4F0-06 21 45833926 45833926 C T TRPM2 Silent p.L1039L 0.43 TCGA-FS-A4F0-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.32 deleterious(0.01) possibly_damaging(0.461) TCGA-FS-A4F0-06 22 21150545 21150545 G T PI4KA Missense_Mutation p.D722E 0.86 deleterious(0.04) benign(0.013) TCGA-FS-A4F0-06 22 22599717 22599717 G A VPREB1 Missense_Mutation p.E136K 0.89 tolerated(0.93) benign(0.059) TCGA-FS-A4F0-06 22 38696915 38696915 G A CSNK1E Missense_Mutation p.R127W 0.91 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A4F0-06 22 41257776 41257776 C T DNAJB7 Missense_Mutation p.G75R 0.85 deleterious(0.03) benign(0.03) TCGA-FS-A4F0-06 22 45750966 45750966 G A SMC1B Silent p.A997A 0.88 TCGA-FS-A4F0-06 22 45750967 45750967 G A SMC1B Missense_Mutation p.A997V 0.88 tolerated(0.11) possibly_damaging(0.786) TCGA-FS-A4F0-06 22 50857874 50857874 G A PPP6R2 Silent p.L277L 0.77 TCGA-FS-A4F0-06 22 50857875 50857875 G A PPP6R2 Missense_Mutation p.E278K 0.76 deleterious(0.01) benign(0.307) TCGA-FS-A4F0-06 2 102959999 102959999 T A IL1RL1 Intron 0.38 TCGA-FS-A4F0-06 2 102988441 102988441 G T IL18R1 Missense_Mutation p.V111F 0.36 deleterious(0) probably_damaging(0.951) TCGA-FS-A4F0-06 2 112751971 112751971 C T MERTK Silent p.I480I 0.45 TCGA-FS-A4F0-06 2 128381890 128381890 G A MYO7B Missense_Mutation p.E1322K 0.40 tolerated(0.08) benign(0.007) TCGA-FS-A4F0-06 2 131519914 131519914 G A AMER3 Missense_Mutation p.R90Q 0.38 tolerated(0.11) benign(0.184) TCGA-FS-A4F0-06 2 133403807 133403807 G A LYPD1 Silent p.I79I 0.30 TCGA-FS-A4F0-06 2 135744965 135744965 C T MAP3K19 Missense_Mutation p.G493R 0.54 tolerated(0.09) benign(0.03) TCGA-FS-A4F0-06 2 137917861 137917861 C T THSD7B Missense_Mutation p.T483M 0.40 tolerated(0.17) benign(0.01) TCGA-FS-A4F0-06 2 1418231 1418231 A G TPO Silent p.E17E 0.40 TCGA-FS-A4F0-06 2 158272128 158272128 G A CYTIP 3'UTR 0.46 TCGA-FS-A4F0-06 2 160604775 160604775 A G MARCH7 Missense_Mutation p.Q325R 0.45 tolerated(0.47) probably_damaging(0.983) TCGA-FS-A4F0-06 2 163695108 163695108 C T KCNH7 5'UTR 0.42 TCGA-FS-A4F0-06 2 16746931 16746931 C T FAM49A Missense_Mutation p.G59S 0.36 tolerated(0.25) possibly_damaging(0.483) TCGA-FS-A4F0-06 2 168104261 168104261 C T XIRP2 Missense_Mutation p.T2120I 0.53 benign(0.009) TCGA-FS-A4F0-06 2 168105217 168105217 G A XIRP2 Missense_Mutation p.D2439N 0.49 benign(0.002) TCGA-FS-A4F0-06 2 171258175 171258175 A C MYO3B Silent p.T701T 0.33 TCGA-FS-A4F0-06 2 171819348 171819348 G A GORASP2 Splice_Site p.X304_splice 0.49 TCGA-FS-A4F0-06 2 175624215 175624215 C T CHRNA1 Splice_Site p.X63_splice 0.39 TCGA-FS-A4F0-06 2 179260239 179260239 C T OSBPL6 Nonsense_Mutation p.R945* 0.38 TCGA-FS-A4F0-06 2 179528568 179528568 C T TTN Silent p.E12142E 0.39 TCGA-FS-A4F0-06 2 179587638 179587638 C T TTN Missense_Mutation p.E7330K 0.43 TCGA-FS-A4F0-06 2 179604178 179604178 C T TTN Silent p.Q4594Q 0.61 TCGA-FS-A4F0-06 2 1805525 1805525 C T MYT1L Silent p.K1071K 0.44 TCGA-FS-A4F0-06 2 187712480 187712480 G A ZSWIM2 Missense_Mutation p.P70S 0.48 deleterious(0.03) benign(0.024) TCGA-FS-A4F0-06 2 191845366 191845366 G A STAT1 Missense_Mutation p.P538S 0.35 tolerated(1) benign(0.019) TCGA-FS-A4F0-06 2 196592924 196592924 C T SLC39A10 Nonsense_Mutation p.Q730* 0.42 TCGA-FS-A4F0-06 2 196729702 196729702 C T DNAH7 Missense_Mutation p.R2226K 0.43 tolerated(0.05) benign(0.049) TCGA-FS-A4F0-06 2 207459551 207459551 G A ADAM23 Silent p.R723R 0.44 TCGA-FS-A4F0-06 2 211159129 211159129 C T MYL1 Silent p.K106K 0.48 TCGA-FS-A4F0-06 2 21234789 21234789 C T APOB Missense_Mutation p.G1651R 0.38 benign(0.101) TCGA-FS-A4F0-06 2 214354720 214354720 C T SPAG16 Missense_Mutation p.P326S 0.51 tolerated(0.11) benign(0.39) TCGA-FS-A4F0-06 2 214354721 214354721 C T SPAG16 Missense_Mutation p.P326L 0.51 tolerated(0.15) benign(0.194) TCGA-FS-A4F0-06 2 216903939 216903939 G A PECR 3'UTR 0.46 TCGA-FS-A4F0-06 2 219507792 219507792 G A ZNF142 Silent p.A1149A 0.57 TCGA-FS-A4F0-06 2 219507793 219507793 G A ZNF142 Missense_Mutation p.A1149V 0.57 deleterious(0) possibly_damaging(0.787) TCGA-FS-A4F0-06 2 226378095 226378095 G A NYAP2 Missense_Mutation p.G77E 0.32 tolerated(0.78) benign(0.087) TCGA-FS-A4F0-06 2 228881314 228881314 C T SPHKAP Missense_Mutation p.R1419Q 0.91 tolerated(0.72) benign(0.004) TCGA-FS-A4F0-06 2 231108466 231108466 G A SP140 Missense_Mutation p.E171K 0.84 tolerated(0.2) benign(0.001) TCGA-FS-A4F0-06 2 231118084 231118084 G A SP140 Missense_Mutation p.E371K 0.92 tolerated(0.11) benign(0.064) TCGA-FS-A4F0-06 2 27352463 27352463 C G ABHD1 Missense_Mutation p.P196A 0.44 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F0-06 2 27851919 27851919 G A GPN1 Silent p.R12R 0.47 TCGA-FS-A4F0-06 2 29222195 29222195 C T FAM179A Silent p.A96A 0.52 TCGA-FS-A4F0-06 2 39234270 39234270 G A SOS1 Silent p.L859L 0.45 TCGA-FS-A4F0-06 2 39250247 39250247 C A SOS1 Missense_Mutation p.C441F 0.40 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F0-06 2 43514064 43514064 T C THADA Missense_Mutation p.N1716S 0.44 tolerated(0.52) benign(0.019) TCGA-FS-A4F0-06 2 44508548 44508548 C T SLC3A1 Silent p.F211F 0.38 TCGA-FS-A4F0-06 2 49190277 49190277 G A FSHR Silent p.I561I 0.53 TCGA-FS-A4F0-06 2 51254876 51254876 G A NRXN1 Missense_Mutation p.P179L 0.52 tolerated(0.08) benign(0.063) TCGA-FS-A4F0-06 2 65245773 65245773 A T SLC1A4 Missense_Mutation p.T442S 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4F0-06 2 71753454 71753454 C T DYSF Silent p.F418F 0.44 TCGA-FS-A4F0-06 2 71753455 71753455 C T DYSF Missense_Mutation p.R419W 0.44 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 2 74328187 74328187 G A TET3 Silent p.E1289E 0.45 TCGA-FS-A4F0-06 2 74686871 74686871 G A WBP1 Nonsense_Mutation p.W57* 0.42 TCGA-FS-A4F0-06 2 74751085 74751085 G A DQX1 Missense_Mutation p.P261S 0.53 tolerated(0.22) possibly_damaging(0.854) TCGA-FS-A4F0-06 2 76975811 76975811 G A LRRTM4 3'UTR 0.44 TCGA-FS-A4F0-06 2 77748878 77748878 C T LRRTM4 Intron 0.49 TCGA-FS-A4F0-06 2 84811225 84811225 A G DNAH6 Missense_Mutation p.T778A 0.36 tolerated(0.2) benign(0.015) TCGA-FS-A4F0-06 2 95537633 95537633 G A TEKT4 Silent p.S103S 0.42 TCGA-FS-A4F0-06 2 95537634 95537634 G A TEKT4 Missense_Mutation p.E104K 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A4F0-06 2 99154342 99154342 C T INPP4A Missense_Mutation p.R162C 0.40 deleterious(0) possibly_damaging(0.888) TCGA-FS-A4F0-06 3 107491799 107491799 T C BBX Missense_Mutation p.Y411H 0.49 tolerated(0.43) possibly_damaging(0.828) TCGA-FS-A4F0-06 3 108572734 108572734 G A TRAT1 3'UTR 0.49 TCGA-FS-A4F0-06 3 108626839 108626839 C T GUCA1C 3'UTR 0.39 TCGA-FS-A4F0-06 3 111794183 111794183 C T TMPRSS7 Missense_Mutation p.S474F 0.48 tolerated(0.67) benign(0.017) TCGA-FS-A4F0-06 3 112991981 112991981 A G BOC Missense_Mutation p.T343A 0.39 tolerated(0.14) benign(0.02) TCGA-FS-A4F0-06 3 121190863 121190863 G A POLQ Missense_Mutation p.P2231L 0.46 deleterious(0) possibly_damaging(0.856) TCGA-FS-A4F0-06 3 121208248 121208248 G A POLQ Missense_Mutation p.S1177L 0.45 tolerated_low_confidence(0.14) benign(0.007) TCGA-FS-A4F0-06 3 121575953 121575953 C T EAF2 Missense_Mutation p.P145L 0.47 tolerated(0.05) benign(0.01) TCGA-FS-A4F0-06 3 122004117 122004117 C T CASR 3'UTR 0.50 TCGA-FS-A4F0-06 3 122842984 122842984 C T PDIA5 Silent p.F227F 0.39 TCGA-FS-A4F0-06 3 123452564 123452564 C T MYLK Missense_Mutation p.E427K 0.46 deleterious(0) benign(0.156) TCGA-FS-A4F0-06 3 126062519 126062519 G A KLF15 3'UTR 0.34 TCGA-FS-A4F0-06 3 12645679 12645679 G A RAF1 Missense_Mutation p.H264Y 0.50 tolerated(0.09) possibly_damaging(0.845) TCGA-FS-A4F0-06 3 130159541 130159541 G A COL6A5 Missense_Mutation p.R2120H 0.43 tolerated(0.79) benign(0) TCGA-FS-A4F0-06 3 130368181 130368181 C T COL6A6 Silent p.S1836S 0.48 TCGA-FS-A4F0-06 3 133483724 133483724 G A TF Missense_Mutation p.D435N 0.45 tolerated(0.28) benign(0) TCGA-FS-A4F0-06 3 13395060 13395060 C T NUP210 Silent p.K874K 0.46 TCGA-FS-A4F0-06 3 135722046 135722046 C T PPP2R3A Missense_Mutation p.P569L 0.49 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A4F0-06 3 142281333 142281333 G A ATR Missense_Mutation p.P304L 0.38 tolerated_low_confidence(0.1) benign(0.054) TCGA-FS-A4F0-06 3 142762057 142762057 C T U2SURP Missense_Mutation p.S828F 0.54 tolerated(0.13) benign(0.007) TCGA-FS-A4F0-06 3 150398319 150398319 C T FAM194A Silent p.Q349Q 0.51 TCGA-FS-A4F0-06 3 151164229 151164229 T C IGSF10 Silent p.S1180S 0.45 TCGA-FS-A4F0-06 3 155311920 155311920 G A PLCH1 Missense_Mutation p.H82Y 0.44 deleterious(0.01) possibly_damaging(0.811) TCGA-FS-A4F0-06 3 159711579 159711579 G A IL12A Missense_Mutation p.R185K 0.49 tolerated(0.23) benign(0.154) TCGA-FS-A4F0-06 3 160249302 160249302 T A KPNA4 Missense_Mutation p.I111L 0.50 deleterious(0) possibly_damaging(0.844) TCGA-FS-A4F0-06 3 164741375 164741375 C T SI Missense_Mutation p.D1028N 0.48 tolerated(0.54) benign(0.027) TCGA-FS-A4F0-06 3 16640011 16640011 G A DAZL Missense_Mutation p.P53L 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 3 168833453 168833453 C T MECOM Missense_Mutation p.G613D 0.47 tolerated(0.45) benign(0.059) TCGA-FS-A4F0-06 3 169574607 169574607 T G LRRC31 Missense_Mutation p.S181R 0.50 tolerated(0.11) benign(0.033) TCGA-FS-A4F0-06 3 17051422 17051422 G A PLCL2 Missense_Mutation p.R69K 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-FS-A4F0-06 3 172165900 172165900 G A GHSR Missense_Mutation p.R102C 0.43 deleterious(0.01) probably_damaging(0.969) TCGA-FS-A4F0-06 3 175520927 175520927 C T NAALADL2 Missense_Mutation p.S775L 0.40 deleterious(0.01) possibly_damaging(0.662) TCGA-FS-A4F0-06 3 183469917 183469917 G A YEATS2 Silent p.Q342Q 0.44 TCGA-FS-A4F0-06 3 184017647 184017647 G A PSMD2 Silent p.E48E 0.49 TCGA-FS-A4F0-06 3 184091349 184091349 T G THPO Missense_Mutation p.I84L 0.44 tolerated(0.16) benign(0.045) TCGA-FS-A4F0-06 3 35758831 35758831 A T ARPP21 Missense_Mutation p.K292M 0.53 deleterious(0) benign(0.089) TCGA-FS-A4F0-06 3 35758832 35758832 G A ARPP21 Silent p.K292K 0.53 TCGA-FS-A4F0-06 3 36873589 36873589 C T TRANK1 Silent p.K2451K 0.45 TCGA-FS-A4F0-06 3 36874735 36874735 G A TRANK1 Silent p.C2069C 0.38 TCGA-FS-A4F0-06 3 38307645 38307645 C T SLC22A13 Silent p.I98I 0.53 TCGA-FS-A4F0-06 3 38349109 38349109 G A SLC22A14 Missense_Mutation p.G225S 0.52 deleterious(0.02) probably_damaging(0.969) TCGA-FS-A4F0-06 3 41961208 41961208 C T ULK4 Splice_Site p.X215_splice 0.38 TCGA-FS-A4F0-06 3 48456265 48456265 G A PLXNB1 Silent p.N1384N 0.46 TCGA-FS-A4F0-06 3 48679411 48679411 G A CELSR3 Silent p.S2899S 0.32 TCGA-FS-A4F0-06 3 49568993 49568993 C T DAG1 Missense_Mutation p.P350L 0.39 deleterious(0.04) probably_damaging(0.909) TCGA-FS-A4F0-06 3 50374571 50374571 C T RASSF1 Intron 0.53 TCGA-FS-A4F0-06 3 52456817 52456817 G A PHF7 Missense_Mutation p.G280E 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 3 54537587 54537587 G A CACNA2D3 Silent p.K150K 0.41 TCGA-FS-A4F0-06 3 54952852 54952852 G A LRTM1 Silent p.I224I 0.42 TCGA-FS-A4F0-06 3 57494115 57494115 C T DNAH12 Missense_Mutation p.G232E 0.42 tolerated(0.08) benign(0.008) TCGA-FS-A4F0-06 3 62189459 62189459 C T PTPRG Missense_Mutation p.P664S 0.42 tolerated(0.24) benign(0) TCGA-FS-A4F0-06 3 65344778 65344778 C T MAGI1 Intron 0.42 TCGA-FS-A4F0-06 3 74347288 74347288 G A CNTN3 Missense_Mutation p.R741C 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 3 88205634 88205634 C T C3orf38 Missense_Mutation p.S280F 0.50 deleterious(0) benign(0.033) TCGA-FS-A4F0-06 3 9828998 9828998 G A TADA3 Silent p.S197S 0.46 TCGA-FS-A4F0-06 4 108948914 108948914 G A HADH Missense_Mutation p.R236Q 0.54 deleterious(0) possibly_damaging(0.881) TCGA-FS-A4F0-06 4 109670554 109670554 C T ETNPPL Missense_Mutation p.G256E 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 4 111397773 111397773 C T ENPEP Missense_Mutation p.S68L 0.48 tolerated(0.13) benign(0.033) TCGA-FS-A4F0-06 4 111470996 111470996 C T ENPEP Silent p.L819L 0.43 TCGA-FS-A4F0-06 4 119951914 119951914 G A SYNPO2 Missense_Mutation p.D662N 0.48 tolerated(0.06) possibly_damaging(0.821) TCGA-FS-A4F0-06 4 123268917 123268917 C T KIAA1109 Missense_Mutation p.S4371F 0.50 probably_damaging(0.991) TCGA-FS-A4F0-06 4 129782942 129782942 G A JADE1 Silent p.E355E 0.45 TCGA-FS-A4F0-06 4 145655996 145655996 A T HHIP Nonsense_Mutation p.K622* 0.44 TCGA-FS-A4F0-06 4 155156138 155156138 C T DCHS2 Silent p.T2767T 0.37 TCGA-FS-A4F0-06 4 184595963 184595963 C T TRAPPC11 Nonsense_Mutation p.Q220* 0.59 TCGA-FS-A4F0-06 4 185691476 185691476 G A ACSL1 Intron 0.39 TCGA-FS-A4F0-06 4 187004356 187004356 C T TLR3 Missense_Mutation p.R506C 0.35 tolerated(0.14) benign(0.354) TCGA-FS-A4F0-06 4 188924561 188924561 G A ZFP42 Silent p.R200R 0.41 TCGA-FS-A4F0-06 4 22456510 22456510 C T GPR125 Missense_Mutation p.G151E 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 4 22456511 22456511 C T GPR125 Missense_Mutation p.G151R 0.37 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F0-06 4 265889 265889 C T ZNF732 Missense_Mutation p.E253K 0.57 tolerated(0.12) probably_damaging(0.973) TCGA-FS-A4F0-06 4 2696694 2696694 C T FAM193A Silent p.H747H 0.52 TCGA-FS-A4F0-06 4 38995412 38995412 C T TMEM156 Missense_Mutation p.E189K 0.39 tolerated(0.09) benign(0.076) TCGA-FS-A4F0-06 4 41748105 41748105 C T PHOX2B Missense_Mutation p.G222R 0.62 tolerated_low_confidence(0.28) unknown(0) TCGA-FS-A4F0-06 4 48091678 48091678 G A TXK Intron 0.47 TCGA-FS-A4F0-06 4 48136236 48136236 G A TXK 5'UTR 0.43 TCGA-FS-A4F0-06 4 54343060 54343060 C G LNX1 Silent p.S584S 0.49 TCGA-FS-A4F0-06 4 628567 628567 C T PDE6B Silent p.I190I 0.43 TCGA-FS-A4F0-06 4 7044548 7044548 G A CCDC96 Missense_Mutation p.P40S 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-FS-A4F0-06 4 71508043 71508043 G A ENAM Silent p.Q300Q 0.39 TCGA-FS-A4F0-06 4 73013133 73013133 C T NPFFR2 Silent p.P391P 0.48 TCGA-FS-A4F0-06 4 74281999 74281999 A G ALB Silent p.E406E 0.43 TCGA-FS-A4F0-06 4 755194 755194 C T PCGF3 Missense_Mutation p.S197F 0.40 deleterious(0.01) benign(0.315) TCGA-FS-A4F0-06 4 755195 755195 C T PCGF3 Silent p.S197S 0.40 TCGA-FS-A4F0-06 4 78873829 78873829 A G MRPL1 3'UTR 0.53 TCGA-FS-A4F0-06 4 83582130 83582130 G A SCD5 Intron 0.40 TCGA-FS-A4F0-06 4 95194771 95194771 C T SMARCAD1 Silent p.L526L 0.38 TCGA-FS-A4F0-06 5 101576476 101576476 G A SLCO4C1 Missense_Mutation p.H608Y 0.38 deleterious(0.01) benign(0.008) TCGA-FS-A4F0-06 5 10280619 10280619 G A CMBL Silent p.P228P 0.35 TCGA-FS-A4F0-06 5 10280620 10280620 G A CMBL Missense_Mutation p.P228L 0.34 deleterious(0.02) probably_damaging(0.978) TCGA-FS-A4F0-06 5 110784843 110784843 T C CAMK4 Silent p.S189S 0.44 TCGA-FS-A4F0-06 5 111643179 111643179 C T EPB41L4A Silent p.T36T 0.54 TCGA-FS-A4F0-06 5 115168334 115168334 G A ATG12 Missense_Mutation p.P110S 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 5 123979242 123979242 G A ZNF608 Nonsense_Mutation p.Q1420* 0.97 TCGA-FS-A4F0-06 5 123979243 123979243 G A ZNF608 Silent p.L1419L 0.97 TCGA-FS-A4F0-06 5 127702115 127702115 G A FBN2 Missense_Mutation p.H753Y 1.00 deleterious(0) benign(0.012) TCGA-FS-A4F0-06 5 13809159 13809159 C T DNAH5 Silent p.Q2582Q 0.35 TCGA-FS-A4F0-06 5 13841911 13841911 G A DNAH5 Missense_Mutation p.L1792F 0.54 possibly_damaging(0.849) TCGA-FS-A4F0-06 5 140183076 140183076 C T PCDHA3 Missense_Mutation p.P765L 0.89 deleterious_low_confidence(0.01) benign(0.101) TCGA-FS-A4F0-06 5 140207653 140207653 G A PCDHA6 5'UTR 0.92 TCGA-FS-A4F0-06 5 140230192 140230192 C T PCDHA9 Silent p.I704I 0.89 TCGA-FS-A4F0-06 5 140431133 140431133 G A PCDHB1 Silent p.G26G 0.89 TCGA-FS-A4F0-06 5 147024539 147024539 G A JAKMIP2 Silent p.T319T 0.89 TCGA-FS-A4F0-06 5 147649617 147649617 G A SPINK13 5'UTR 0.85 TCGA-FS-A4F0-06 5 156786157 156786157 G A CYFIP2 Splice_Site p.X913_splice 0.90 TCGA-FS-A4F0-06 5 15936872 15936872 C T FBXL7 Silent p.R351R 0.42 TCGA-FS-A4F0-06 5 168098237 168098237 C T SLIT3 Missense_Mutation p.D1365N 0.86 tolerated(0.06) possibly_damaging(0.471) TCGA-FS-A4F0-06 5 32088112 32088112 C T PDZD2 Silent p.L1520L 0.47 TCGA-FS-A4F0-06 5 3600771 3600771 C T IRX1 Missense_Mutation p.S454L 0.44 deleterious(0) benign(0.068) TCGA-FS-A4F0-06 5 40909682 40909682 C T C7 5'UTR 0.52 TCGA-FS-A4F0-06 5 41149408 41149408 G A C6 Missense_Mutation p.S853L 0.45 deleterious(0) possibly_damaging(0.548) TCGA-FS-A4F0-06 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.38 TCGA-FS-A4F0-06 5 43503849 43503849 C T C5orf34 Missense_Mutation p.D316N 0.47 tolerated(0.13) benign(0.323) TCGA-FS-A4F0-06 5 55192199 55192199 G A IL31RA Nonsense_Mutation p.W265* 0.49 TCGA-FS-A4F0-06 5 66480205 66480205 G A CD180 Missense_Mutation p.L156F 0.45 deleterious(0) probably_damaging(0.925) TCGA-FS-A4F0-06 5 70856009 70856009 C T BDP1 Missense_Mutation p.P2481S 0.51 tolerated(1) benign(0.001) TCGA-FS-A4F0-06 5 89924538 89924538 A G GPR98 Silent p.T466T 0.44 TCGA-FS-A4F0-06 5 93217390 93217390 C T FAM172A Missense_Mutation p.G191E 0.40 tolerated(0.07) probably_damaging(0.976) TCGA-FS-A4F0-06 5 94224666 94224666 C T MCTP1 Silent p.R617R 0.53 TCGA-FS-A4F0-06 6 100390977 100390977 T G MCHR2 Missense_Mutation p.R145S 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 6 100896510 100896510 C T SIM1 Silent p.L196L 0.47 TCGA-FS-A4F0-06 6 105198250 105198250 G A HACE1 Missense_Mutation p.P770L 0.33 deleterious(0.05) benign(0.197) TCGA-FS-A4F0-06 6 105725931 105725931 G A PREP 3'UTR 0.55 TCGA-FS-A4F0-06 6 107475898 107475898 G A PDSS2 Silent p.A375A 0.34 TCGA-FS-A4F0-06 6 112443370 112443370 G A LAMA4 Missense_Mutation p.P1441L 0.38 tolerated(0.25) benign(0.044) TCGA-FS-A4F0-06 6 117127855 117127855 G A GPRC6A Missense_Mutation p.S338F 0.46 deleterious(0.02) benign(0.063) TCGA-FS-A4F0-06 6 119332542 119332542 G A FAM184A Nonsense_Mutation p.Q529* 0.30 TCGA-FS-A4F0-06 6 127898343 127898343 C T C6orf58 Missense_Mutation p.P5S 0.48 tolerated(0.36) benign(0.178) TCGA-FS-A4F0-06 6 129511366 129511366 G A LAMA2 Missense_Mutation p.G495E 0.49 tolerated(1) benign(0.004) TCGA-FS-A4F0-06 6 129712686 129712686 G A LAMA2 Missense_Mutation p.E1708K 0.40 tolerated(0.93) benign(0.001) TCGA-FS-A4F0-06 6 130762664 130762664 G A TMEM200A Missense_Mutation p.G366E 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-FS-A4F0-06 6 134373655 134373655 A C SLC2A12 5'UTR 0.40 TCGA-FS-A4F0-06 6 139094677 139094677 G - CCDC28A 5'UTR 0.23 TCGA-FS-A4F0-06 6 151914356 151914356 C T CCDC170 Missense_Mutation p.R470C 0.42 deleterious(0) probably_damaging(0.924) TCGA-FS-A4F0-06 6 153075413 153075413 G A VIP Missense_Mutation p.D74N 0.41 tolerated(0.07) probably_damaging(0.94) TCGA-FS-A4F0-06 6 160679408 160679408 A T SLC22A2 Missense_Mutation p.Y128N 0.37 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F0-06 6 160679409 160679409 C T SLC22A2 Silent p.V127V 0.38 TCGA-FS-A4F0-06 6 161174038 161174038 A C PLG Missense_Mutation p.Y793S 0.51 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F0-06 6 165715266 165715266 A G C6orf118 Missense_Mutation p.L182S 0.58 deleterious(0) possibly_damaging(0.558) TCGA-FS-A4F0-06 6 166571907 166571907 C T T Missense_Mutation p.E402K 0.49 tolerated(0.11) benign(0.426) TCGA-FS-A4F0-06 6 169628232 169628232 C T THBS2 Missense_Mutation p.D802N 0.45 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F0-06 6 29141953 29141953 G A OR2J2 Missense_Mutation p.E181K 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A4F0-06 6 29581098 29581098 C T GABBR1 Silent p.E496E 0.45 TCGA-FS-A4F0-06 6 3015827 3015827 C T NQO2 Nonsense_Mutation p.Q123* 0.47 TCGA-FS-A4F0-06 6 31656529 31656529 G A ABHD16A Silent p.L407L 0.40 TCGA-FS-A4F0-06 6 33656487 33656487 C T ITPR3 Missense_Mutation p.S2208F 0.52 deleterious(0) possibly_damaging(0.81) TCGA-FS-A4F0-06 6 35480433 35480433 G A TULP1 Missense_Mutation p.P28S 0.47 deleterious_low_confidence(0.01) benign(0.001) TCGA-FS-A4F0-06 6 35773804 35773804 C T LHFPL5 Silent p.F119F 0.59 TCGA-FS-A4F0-06 6 37358692 37358692 C T RNF8 3'UTR 0.57 TCGA-FS-A4F0-06 6 38913243 38913243 G A DNAH8 Missense_Mutation p.G3786E 0.42 probably_damaging(1) TCGA-FS-A4F0-06 6 41318537 41318537 G A NCR2 Missense_Mutation p.E256K 0.56 tolerated_low_confidence(0.21) benign(0.292) TCGA-FS-A4F0-06 6 41652554 41652554 C T TFEB Missense_Mutation p.R405K 0.49 tolerated(0.94) benign(0.112) TCGA-FS-A4F0-06 6 42236210 42236210 G A TRERF1 Silent p.S373S 0.46 TCGA-FS-A4F0-06 6 43041674 43041674 C T KLC4 Silent p.L612L 0.39 TCGA-FS-A4F0-06 6 43752436 43752436 C T VEGFA 3'Flank 0.59 TCGA-FS-A4F0-06 6 51889710 51889710 G A PKHD1 Missense_Mutation p.S1633F 0.48 deleterious(0) probably_damaging(0.932) TCGA-FS-A4F0-06 6 54219401 54219401 G A TINAG Missense_Mutation p.R406Q 0.51 tolerated(0.4) benign(0.011) TCGA-FS-A4F0-06 6 56044493 56044493 C T COL21A1 Missense_Mutation p.E175K 0.37 tolerated(0.09) probably_damaging(0.991) TCGA-FS-A4F0-06 6 70847595 70847595 G A COL19A1 Missense_Mutation p.G468R 0.48 deleterious(0) probably_damaging(0.986) TCGA-FS-A4F0-06 6 74104469 74104469 G A DDX43 5'Flank 0.27 TCGA-FS-A4F0-06 6 90660235 90660235 C T BACH2 Silent p.E530E 0.46 TCGA-FS-A4F0-06 6 9903673 9903673 A C OFCC1 Intron 0.49 TCGA-FS-A4F0-06 7 100403136 100403136 G A EPHB4 Missense_Mutation p.R889W 0.48 deleterious(0.02) possibly_damaging(0.791) TCGA-FS-A4F0-06 7 100403137 100403137 G A EPHB4 Silent p.A888A 0.49 TCGA-FS-A4F0-06 7 102739068 102739068 G A ARMC10 3'UTR 0.27 TCGA-FS-A4F0-06 7 103557622 103557622 T A RELN Silent p.S79S 0.52 TCGA-FS-A4F0-06 7 116739827 116739827 T C ST7 Silent p.L55L 0.42 TCGA-FS-A4F0-06 7 121612723 121612726 GAAG - PTPRZ1 Frame_Shift_Del p.E145Dfs*31 0.38 TCGA-FS-A4F0-06 7 129100212 129100212 T C STRIP2 Missense_Mutation p.L492S 0.56 tolerated(0.46) benign(0.063) TCGA-FS-A4F0-06 7 130145006 130145006 C T MEST 3'UTR 0.47 TCGA-FS-A4F0-06 7 136699960 136699960 C T CHRM2 Silent p.I116I 0.41 TCGA-FS-A4F0-06 7 137237241 137237241 G A DGKI Missense_Mutation p.S674F 0.38 deleterious(0) probably_damaging(0.914) TCGA-FS-A4F0-06 7 137612928 137612928 G A CREB3L2 Missense_Mutation p.T96I 0.54 tolerated(0.39) benign(0) TCGA-FS-A4F0-06 7 138437472 138437472 C T ATP6V0A4 Silent p.L309L 0.48 TCGA-FS-A4F0-06 7 138482856 138482856 C T TMEM213 Missense_Mutation p.R3C 0.27 tolerated_low_confidence(0.1) benign(0.038) TCGA-FS-A4F0-06 7 140221877 140221877 C T DENND2A Missense_Mutation p.E897K 0.46 tolerated(0.16) benign(0.025) TCGA-FS-A4F0-06 7 140301989 140301989 C T DENND2A Missense_Mutation p.G70E 0.51 tolerated(0.26) benign(0.004) TCGA-FS-A4F0-06 7 140301990 140301990 C T DENND2A Missense_Mutation p.G70R 0.51 tolerated(0.12) benign(0.232) TCGA-FS-A4F0-06 7 141747673 141747673 G A MGAM Missense_Mutation p.D863N 0.35 tolerated(0.11) benign(0.024) TCGA-FS-A4F0-06 7 142139747 142139747 C T TRBV7-6 Nonsense_Mutation p.W8* 0.40 TCGA-FS-A4F0-06 7 142176390 142176390 G A TRBV7-4 Silent p.L96L 0.42 TCGA-FS-A4F0-06 7 142479923 142479923 G A PRSS3P2 RNA 0.30 TCGA-FS-A4F0-06 7 143098514 143098514 C T EPHA1 Missense_Mutation p.G112E 0.45 tolerated(1) benign(0.005) TCGA-FS-A4F0-06 7 143556000 143556000 C T FAM115A Missense_Mutation p.E808K 0.28 tolerated(0.55) benign(0.04) TCGA-FS-A4F0-06 7 143771513 143771513 C T OR2A25 Silent p.V67V 0.41 TCGA-FS-A4F0-06 7 150270061 150270061 G A GIMAP4 Silent p.V301V 0.46 TCGA-FS-A4F0-06 7 151845931 151845931 T A KMT2C Missense_Mutation p.S4361C 0.45 probably_damaging(0.95) TCGA-FS-A4F0-06 7 151845993 151845993 C T KMT2C Missense_Mutation p.G4340D 0.43 benign(0.24) TCGA-FS-A4F0-06 7 152551615 152551615 C T ACTR3B Missense_Mutation p.P412S 0.52 tolerated(0.24) possibly_damaging(0.614) TCGA-FS-A4F0-06 7 18801871 18801871 G A HDAC9 Missense_Mutation p.G712E 0.34 deleterious(0) benign(0.202) TCGA-FS-A4F0-06 7 19737924 19737924 C T TWISTNB 3'UTR 0.46 TCGA-FS-A4F0-06 7 33423371 33423371 G A BBS9 Missense_Mutation p.G628E 0.43 tolerated(0.17) probably_damaging(0.979) TCGA-FS-A4F0-06 7 34094807 34094807 C T BMPER Silent p.S273S 0.45 TCGA-FS-A4F0-06 7 47342834 47342834 C G TNS3 Silent p.A1057A 0.45 TCGA-FS-A4F0-06 7 48392023 48392023 G A ABCA13 Missense_Mutation p.E3543K 0.29 possibly_damaging(0.803) TCGA-FS-A4F0-06 7 49842382 49842382 G A VWC2 Missense_Mutation p.E258K 0.41 deleterious(0.02) possibly_damaging(0.766) TCGA-FS-A4F0-06 7 63726438 63726438 G A ZNF679 Missense_Mutation p.E143K 0.63 tolerated(0.37) benign(0.204) TCGA-FS-A4F0-06 7 65552756 65552756 C T ASL Silent p.A232A 0.37 TCGA-FS-A4F0-06 7 75583369 75583369 C T POR Missense_Mutation p.A20V 0.52 tolerated(0.18) benign(0) TCGA-FS-A4F0-06 7 75583370 75583370 C T POR Silent p.A20A 0.50 TCGA-FS-A4F0-06 7 75643104 75643104 T C STYXL1 Missense_Mutation p.T137A 0.37 tolerated(0.36) benign(0.006) TCGA-FS-A4F0-06 7 77824296 77824296 C A MAGI2 Missense_Mutation p.A722S 0.11 tolerated(0.7) benign(0.034) TCGA-FS-A4F0-06 7 82544604 82544604 C T PCLO Missense_Mutation p.R4233K 0.52 unknown(0) TCGA-FS-A4F0-06 7 82580617 82580617 G A PCLO Missense_Mutation p.P3096L 0.40 unknown(0) TCGA-FS-A4F0-06 7 82585473 82585473 C T PCLO Missense_Mutation p.G1599E 0.44 unknown(0) TCGA-FS-A4F0-06 7 86539146 86539146 G A KIAA1324L Silent p.L781L 0.45 TCGA-FS-A4F0-06 7 91632203 91632203 C T AKAP9 Missense_Mutation p.S991L 0.43 benign(0) TCGA-FS-A4F0-06 7 91742934 91742934 T A CYP51A1 3'UTR 0.28 TCGA-FS-A4F0-06 7 94740616 94740616 G A PPP1R9A Missense_Mutation p.E481K 0.43 deleterious(0) possibly_damaging(0.844) TCGA-FS-A4F0-06 7 96746946 96746946 C T ACN9 5'UTR 0.43 TCGA-FS-A4F0-06 7 96746947 96746947 C T ACN9 5'UTR 0.44 TCGA-FS-A4F0-06 7 98574607 98574609 GAA - TRRAP In_Frame_Del p.E2758del 0.37 TCGA-FS-A4F0-06 8 108296969 108296969 C T ANGPT1 Silent p.G382G 0.44 TCGA-FS-A4F0-06 8 10892760 10892760 A G XKR6 Intron 0.52 TCGA-FS-A4F0-06 8 121013890 121013890 G A DEPTOR Missense_Mutation p.S244N 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-FS-A4F0-06 8 126011774 126011774 C T SQLE Silent p.S43S 0.44 TCGA-FS-A4F0-06 8 140631299 140631299 G A KCNK9 Silent p.F109F 0.51 TCGA-FS-A4F0-06 8 143960498 143960498 G A CYP11B1 Silent p.P115P 0.38 TCGA-FS-A4F0-06 8 144103150 144103150 C G LY6E Missense_Mutation p.L114V 0.44 deleterious(0.04) possibly_damaging(0.636) TCGA-FS-A4F0-06 8 144103157 144103157 C T LY6E Missense_Mutation p.A116V 0.43 tolerated(0.14) benign(0.003) TCGA-FS-A4F0-06 8 144943038 144943038 A G EPPK1 Missense_Mutation p.F1462L 0.40 benign(0.002) TCGA-FS-A4F0-06 8 1851497 1851497 G A ARHGEF10 Silent p.Q567Q 0.45 TCGA-FS-A4F0-06 8 24170920 24170920 G A ADAM28 Missense_Mutation p.D135N 0.44 tolerated(0.46) benign(0.059) TCGA-FS-A4F0-06 8 27321203 27321203 G A CHRNA2 Missense_Mutation p.P253S 0.41 tolerated(0.13) probably_damaging(0.96) TCGA-FS-A4F0-06 8 27779539 27779539 C T SCARA5 Silent p.G155G 0.57 TCGA-FS-A4F0-06 8 28384779 28384779 G T FZD3 Nonsense_Mutation p.E168* 0.44 TCGA-FS-A4F0-06 8 39873217 39873217 G A IDO2 3'UTR 0.37 TCGA-FS-A4F0-06 8 41572529 41572529 G A ANK1 Silent p.L589L 0.38 TCGA-FS-A4F0-06 8 43037367 43037367 C T HGSNAT Silent p.L364L 0.46 TCGA-FS-A4F0-06 8 52387609 52387609 G A PXDNL Missense_Mutation p.A206V 0.46 tolerated(0.07) benign(0.318) TCGA-FS-A4F0-06 8 55371774 55371774 T C SOX17 Missense_Mutation p.F155S 0.28 deleterious(0) probably_damaging(0.91) TCGA-FS-A4F0-06 8 55542857 55542857 G A RP1 Missense_Mutation p.E2139K 0.50 deleterious(0.04) benign(0.061) TCGA-FS-A4F0-06 8 57353920 57353920 C T PENK Missense_Mutation p.E239K 0.47 tolerated(0.11) benign(0.251) TCGA-FS-A4F0-06 8 59512394 59512394 A C NSMAF Missense_Mutation p.F487L 0.53 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 8 69445496 69445496 A G C8orf34 Intron 0.43 TCGA-FS-A4F0-06 8 77617473 77617473 G A ZFHX4 Missense_Mutation p.G384R 0.48 probably_damaging(0.979) TCGA-FS-A4F0-06 8 81905492 81905492 G A PAG1 5'UTR 0.38 TCGA-FS-A4F0-06 8 86044157 86044157 C T LRRCC1 Silent p.F643F 0.31 TCGA-FS-A4F0-06 8 87241983 87241983 G A SLC7A13 Missense_Mutation p.S175F 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A4F0-06 8 88885781 88885781 G A DCAF4L2 Missense_Mutation p.S140F 0.44 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 8 9610056 9610056 G T TNKS Missense_Mutation p.A1025S 0.37 tolerated(0.67) benign(0.003) TCGA-FS-A4F0-06 9 104192121 104192121 G A ALDOB Silent p.F80F 0.90 TCGA-FS-A4F0-06 9 104432780 104432780 C T GRIN3A Silent p.R638R 0.94 TCGA-FS-A4F0-06 9 107361542 107361542 C T OR13C5 Silent p.L51L 0.78 TCGA-FS-A4F0-06 9 113704412 113704412 C T LPAR1 Missense_Mutation p.E28K 0.93 tolerated(0.46) benign(0.191) TCGA-FS-A4F0-06 9 120466791 120466791 C T TLR4 Missense_Mutation p.A14V 0.84 tolerated(0.09) possibly_damaging(0.792) TCGA-FS-A4F0-06 9 120470904 120470904 C T TLR4 Missense_Mutation p.P53S 0.84 deleterious(0.02) benign(0.315) TCGA-FS-A4F0-06 9 130495726 130495726 G A TOR2A Silent p.F177F 0.90 TCGA-FS-A4F0-06 9 130674610 130674610 G A ST6GALNAC4 Missense_Mutation p.T183I 0.90 possibly_damaging(0.733) TCGA-FS-A4F0-06 9 136310084 136310084 C T ADAMTS13 Missense_Mutation p.P841S 0.91 tolerated(0.65) benign(0.009) TCGA-FS-A4F0-06 9 137666738 137666738 C T COL5A1 Missense_Mutation p.P789S 1.00 benign(0.126) TCGA-FS-A4F0-06 9 137666739 137666739 C T COL5A1 Missense_Mutation p.P789L 1.00 benign(0.126) TCGA-FS-A4F0-06 9 14759816 14759816 A T FREM1 Missense_Mutation p.I1763N 0.93 deleterious(0) probably_damaging(0.981) TCGA-FS-A4F0-06 9 20346573 20346573 C T MLLT3 Splice_Site p.X526_splice 0.88 TCGA-FS-A4F0-06 9 32784518 32784518 A G TMEM215 Missense_Mutation p.K113E 0.98 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-FS-A4F0-06 9 33248531 33248531 G A SPINK4 3'UTR 1.00 TCGA-FS-A4F0-06 9 34339151 34339151 G A NUDT2 Nonsense_Mutation p.W38* 0.88 TCGA-FS-A4F0-06 9 34517295 34517295 G T DNAI1 Missense_Mutation p.D611Y 0.84 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F0-06 9 38397236 38397236 T A ALDH1B1 Missense_Mutation p.D497E 0.76 tolerated(0.12) benign(0.218) TCGA-FS-A4F0-06 9 70177667 70177667 G A FOXD4L5 Missense_Mutation p.P106L 0.45 tolerated(0.17) benign(0.142) TCGA-FS-A4F0-06 9 79117387 79117387 C T GCNT1 Silent p.S30S 0.91 TCGA-FS-A4F0-06 9 8485926 8485926 G A PTPRD Missense_Mutation p.P964L 0.89 tolerated(0.08) benign(0.081) TCGA-FS-A4F0-06 9 90503012 90503012 G A SPATA31E1 Missense_Mutation p.G1204S 0.89 tolerated(0.07) benign(0.054) TCGA-FS-A4F0-06 X 105150502 105150502 G A NRK Missense_Mutation p.R314Q 0.83 tolerated(0.35) benign(0.001) TCGA-FS-A4F0-06 X 106144090 106144090 C T RIPPLY1 Silent p.G115G 0.92 TCGA-FS-A4F0-06 X 106840891 106840891 C T FRMPD3 Silent p.A627A 0.88 TCGA-FS-A4F0-06 X 107417842 107417842 C T COL4A6 Missense_Mutation p.G990E 0.93 probably_damaging(1) TCGA-FS-A4F0-06 X 109694485 109694485 G A RGAG1 Missense_Mutation p.G214R 0.89 tolerated(0.06) benign(0.117) TCGA-FS-A4F0-06 X 129499411 129499411 C T SLC25A14 Intron 0.96 TCGA-FS-A4F0-06 X 142795241 142795241 C T SPANXN2 Missense_Mutation p.G146E 0.93 deleterious(0.03) unknown(0) TCGA-FS-A4F0-06 X 142795319 142795319 C T SPANXN2 Missense_Mutation p.G120E 0.07 deleterious(0.04) unknown(0) TCGA-FS-A4F0-06 X 148797450 148797450 C T MAGEA11 Missense_Mutation p.R102W 0.93 deleterious(0.04) benign(0) TCGA-FS-A4F0-06 X 152713275 152713275 G A TREX2 5'UTR 0.94 TCGA-FS-A4F0-06 X 152713276 152713276 G A TREX2 5'UTR 0.94 TCGA-FS-A4F0-06 X 16711336 16711336 G A CTPS2 Silent p.T189T 0.93 TCGA-FS-A4F0-06 X 16711337 16711337 G A CTPS2 Missense_Mutation p.T189I 0.93 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A4F0-06 X 19031931 19031931 C T GPR64 Silent p.T324T 0.94 TCGA-FS-A4F0-06 X 26212915 26212915 G A MAGEB6 Missense_Mutation p.D318N 0.92 tolerated(0.14) benign(0.175) TCGA-FS-A4F0-06 X 3030636 3030636 G A ARSF 3'UTR 0.94 TCGA-FS-A4F0-06 X 37312578 37312578 C T PRRG1 Missense_Mutation p.P121S 0.96 tolerated(0.55) benign(0.011) TCGA-FS-A4F0-06 X 48887770 48887770 G A TFE3 Missense_Mutation p.P543S 0.88 deleterious(0) possibly_damaging(0.876) TCGA-FS-A4F0-06 X 54162998 54162998 C T FAM120C Missense_Mutation p.R395Q 0.83 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F0-06 X 73963413 73963413 G A KIAA2022 Missense_Mutation p.L327F 0.93 tolerated(0.07) possibly_damaging(0.668) TCGA-FS-A4F0-06 X 73963687 73963687 A T KIAA2022 Nonsense_Mutation p.Y235* 0.92 TCGA-FS-A4F4-06 10 3189774 3189774 C G PITRM1 Missense_Mutation p.G743A 0.10 deleterious(0) probably_damaging(1) TCGA-FS-A4F4-06 10 48388513 48388513 A T RBP3 Missense_Mutation p.Y789N 0.76 tolerated(0.18) possibly_damaging(0.788) TCGA-FS-A4F4-06 11 47603718 47603718 G C NDUFS3 Missense_Mutation p.E154Q 0.07 tolerated(0.05) benign(0.062) TCGA-FS-A4F4-06 11 49974838 49974838 G A OR4C13 Silent p.R288R 0.29 TCGA-FS-A4F4-06 12 111290678 111290678 C G CCDC63 5'UTR 0.15 TCGA-FS-A4F4-06 12 130015647 130015647 C T TMEM132D Missense_Mutation p.A358T 0.15 tolerated(0.59) benign(0.042) TCGA-FS-A4F4-06 13 110827615 110827615 C A COL4A1 Missense_Mutation p.G1050W 0.15 probably_damaging(1) TCGA-FS-A4F4-06 14 20585751 20585751 C T OR4K17 Silent p.F62F 0.06 TCGA-FS-A4F4-06 15 42632949 42632949 C T GANC Silent p.L717L 0.41 TCGA-FS-A4F4-06 17 29527570 29527571 - T NF1 Frame_Shift_Ins p.V341Cfs*12 0.21 TCGA-FS-A4F4-06 17 29622049 29622049 A G OMG Missense_Mutation p.V434A 0.14 tolerated_low_confidence(1) unknown(0) TCGA-FS-A4F4-06 17 61972375 61972375 C T CSH1 3'UTR 0.38 TCGA-FS-A4F4-06 19 36832163 36832163 G A ZFP14 Nonsense_Mutation p.Q189* 0.11 TCGA-FS-A4F4-06 19 50365526 50365526 G A PNKP Missense_Mutation p.R348C 0.67 tolerated(0.08) benign(0.001) TCGA-FS-A4F4-06 19 55396865 55396865 C T FCAR Missense_Mutation p.R97C 0.33 tolerated(0.11) benign(0.032) TCGA-FS-A4F4-06 19 9059510 9059510 C G MUC16 Silent p.V9312V 0.05 TCGA-FS-A4F4-06 1 175092773 175092773 A C TNN Missense_Mutation p.K963T 0.32 deleterious(0.01) benign(0.1) TCGA-FS-A4F4-06 1 32740400 32740400 G T LCK Silent p.P56P 0.39 TCGA-FS-A4F4-06 1 57002733 57002733 C T PPAP2B Missense_Mutation p.R64Q 0.35 deleterious(0) possibly_damaging(0.791) TCGA-FS-A4F4-06 22 20780311 20780311 C T SCARF2 Missense_Mutation p.R656H 0.10 deleterious(0.01) benign(0.022) TCGA-FS-A4F4-06 22 29688155 29688155 C T EWSR1 Silent p.L353L 0.42 TCGA-FS-A4F4-06 22 36116626 36116626 G C APOL5 Missense_Mutation p.G23R 0.29 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-FS-A4F4-06 22 36116679 36116679 G A APOL5 Silent p.G40G 0.17 TCGA-FS-A4F4-06 22 36124892 36124892 C G APOL5 Missense_Mutation p.P417A 0.06 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-FS-A4F4-06 22 36236283 36236283 G T RBFOX2 Intron 0.45 TCGA-FS-A4F4-06 22 38328584 38328584 G A MICALL1 Missense_Mutation p.E681K 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-FS-A4F4-06 22 38328586 38328586 G A MICALL1 Silent p.E681E 0.29 TCGA-FS-A4F4-06 22 38328608 38328608 G A MICALL1 Missense_Mutation p.D689N 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F4-06 22 38328629 38328629 G A MICALL1 Missense_Mutation p.D696N 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4F4-06 22 38328830 38328830 G A MICALL1 Silent p.V723V 0.28 TCGA-FS-A4F4-06 22 38329058 38329058 G A MICALL1 Silent p.Q749Q 0.36 TCGA-FS-A4F4-06 22 39770401 39770401 C T SYNGR1 Silent p.I60I 0.39 TCGA-FS-A4F4-06 22 43603548 43603548 T A SCUBE1 Missense_Mutation p.I936F 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-FS-A4F4-06 22 44221895 44221895 C T SULT4A1 Missense_Mutation p.D281N 0.34 deleterious(0.01) benign(0.039) TCGA-FS-A4F4-06 22 47022726 47022726 C G GRAMD4 Missense_Mutation p.F10L 0.18 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FS-A4F4-06 2 204154579 204154579 C T CYP20A1 Nonsense_Mutation p.R355* 0.33 TCGA-FS-A4F4-06 2 238245160 238245160 G A COL6A3 Silent p.N2861N 0.58 TCGA-FS-A4F4-06 2 68544407 68544407 A C CNRIP1 Missense_Mutation p.L71R 0.16 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F4-06 3 12224814 12224814 C G SYN2 Intron 0.31 TCGA-FS-A4F4-06 3 170216549 170216549 C T SLC7A14 Silent p.L222L 0.07 TCGA-FS-A4F4-06 3 32994926 32994926 G A CCR4 Silent p.T4T 0.22 TCGA-FS-A4F4-06 3 40468888 40468888 C A ENTPD3 Missense_Mutation p.F493L 0.35 tolerated(0.64) benign(0.008) TCGA-FS-A4F4-06 4 57181813 57181813 C T KIAA1211 Silent p.V715V 0.11 TCGA-FS-A4F4-06 6 117246759 117246759 G T RFX6 Nonsense_Mutation p.G608* 0.21 TCGA-FS-A4F4-06 6 152623200 152623200 T C SYNE1 Splice_Site p.X5783_splice 0.41 TCGA-FS-A4F4-06 6 46679259 46679259 C A PLA2G7 Nonsense_Mutation p.E213* 0.29 TCGA-FS-A4F4-06 6 55147214 55147214 C A HCRTR2 Missense_Mutation p.P433T 0.12 deleterious_low_confidence(0.03) benign(0.018) TCGA-FS-A4F4-06 7 114619817 114619817 G C MDFIC Missense_Mutation p.K267N 0.17 deleterious(0.05) probably_damaging(0.983) TCGA-FS-A4F4-06 7 86416245 86416245 C T GRM3 Silent p.I379I 0.81 TCGA-FS-A4F4-06 7 87810828 87810828 G A ADAM22 Missense_Mutation p.G806E 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F4-06 8 142367699 142367699 G A GPR20 Missense_Mutation p.R109C 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A4F4-06 8 41566384 41566384 G A ANK1 Missense_Mutation p.T670M 0.32 deleterious(0.02) possibly_damaging(0.819) TCGA-FS-A4F4-06 8 56708674 56708674 A - TGS1 Frame_Shift_Del p.K503Nfs*10 0.09 TCGA-FS-A4F4-06 9 101470769 101470769 G T GABBR2 Missense_Mutation p.A84D 0.17 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F4-06 X 118284445 118284445 C T KIAA1210 Missense_Mutation p.R33Q 0.71 tolerated_low_confidence(0.57) benign(0) TCGA-FS-A4F4-06 X 18627601 18627601 A G CDKL5 Missense_Mutation p.D688G 0.92 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-FS-A4F4-06 X 84634218 84634218 G A POF1B Missense_Mutation p.T81I 0.33 deleterious_low_confidence(0.04) benign(0.029) TCGA-FS-A4F4-06 Y 15469761 15469761 A T UTY Nonsense_Mutation p.L425* 0.80 TCGA-FS-A4F5-06 10 1043143 1043143 C T GTPBP4 Intron 0.93 TCGA-FS-A4F5-06 10 115515061 115515061 C T PLEKHS1 Missense_Mutation p.P9S 0.24 tolerated(0.51) benign(0.013) TCGA-FS-A4F5-06 10 115612744 115612744 G A DCLRE1A Silent p.P66P 0.90 TCGA-FS-A4F5-06 10 11963238 11963238 G A UPF2 3'UTR 0.84 TCGA-FS-A4F5-06 10 122625192 122625192 T C WDR11 Silent p.G310G 1.00 TCGA-FS-A4F5-06 10 124591745 124591745 C T CUZD1 3'UTR 0.85 TCGA-FS-A4F5-06 10 124597028 124597028 G A CUZD1 Missense_Mutation p.S164F 0.85 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F5-06 10 125557560 125557560 T C CPXM2 Missense_Mutation p.N274S 0.92 tolerated(0.22) benign(0.329) TCGA-FS-A4F5-06 10 12595230 12595230 C T CAMK1D Silent p.A33A 0.87 TCGA-FS-A4F5-06 10 126716208 126716208 G A CTBP2 Silent p.L41L 0.85 TCGA-FS-A4F5-06 10 14977506 14977506 C T DCLRE1C Silent p.A140A 0.85 TCGA-FS-A4F5-06 10 30318031 30318031 G A KIAA1462 Missense_Mutation p.P349L 0.90 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 10 50227709 50227709 C T VSTM4 Missense_Mutation p.E317K 0.78 deleterious(0) possibly_damaging(0.534) TCGA-FS-A4F5-06 10 5226977 5226977 G A AKR1CL1 Missense_Mutation p.H31Y 1.00 deleterious(0.02) benign(0.369) TCGA-FS-A4F5-06 10 52610567 52610567 C T A1CF Intron 0.72 TCGA-FS-A4F5-06 10 90572917 90572917 A G LIPM Missense_Mutation p.N110S 0.92 deleterious(0.01) probably_damaging(0.984) TCGA-FS-A4F5-06 10 93000322 93000322 C T PCGF5 Missense_Mutation p.P65L 0.29 deleterious(0) possibly_damaging(0.472) TCGA-FS-A4F5-06 10 95110999 95110999 C T MYOF Missense_Mutation p.M1292I 0.93 tolerated(0.09) benign(0.378) TCGA-FS-A4F5-06 10 95259876 95259876 C T CEP55 Missense_Mutation p.S23F 0.81 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A4F5-06 10 96058182 96058182 T G PLCE1 Silent p.P1738P 0.93 TCGA-FS-A4F5-06 10 96748902 96748902 C T CYP2C9 3'UTR 0.90 TCGA-FS-A4F5-06 11 101375063 101375063 C T TRPC6 Missense_Mutation p.G213R 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 11 102743697 102743697 G A MMP12 RNA 0.29 TCGA-FS-A4F5-06 11 102822852 102822852 G A MMP13 Missense_Mutation p.L230F 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 11 1081530 1081530 G A MUC2 Silent p.L516L 0.41 TCGA-FS-A4F5-06 11 110454425 110454425 G A ARHGAP20 Silent p.L484L 0.37 TCGA-FS-A4F5-06 11 111385573 111385573 G A C11orf88 Missense_Mutation p.G22R 0.35 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 11 111749911 111749911 C T FDXACB1 5'Flank 0.41 TCGA-FS-A4F5-06 11 113857486 113857486 G A HTR3A Missense_Mutation p.E324K 0.49 tolerated_low_confidence(0.25) benign(0) TCGA-FS-A4F5-06 11 117859097 117859097 G A IL10RA Missense_Mutation p.G23E 0.45 deleterious(0) probably_damaging(0.983) TCGA-FS-A4F5-06 11 118134909 118134909 G A MPZL2 5'UTR 0.50 TCGA-FS-A4F5-06 11 118425227 118425227 G A IFT46 Missense_Mutation p.P195S 0.43 tolerated(0.11) benign(0.203) TCGA-FS-A4F5-06 11 118771480 118771480 G A BCL9L Missense_Mutation p.S991L 0.52 possibly_damaging(0.621) TCGA-FS-A4F5-06 11 121358839 121358839 C T SORL1 Silent p.L209L 0.34 TCGA-FS-A4F5-06 11 122775078 122775078 G A C11orf63 Missense_Mutation p.G264R 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 11 123676380 123676380 G A OR6M1 Silent p.P226P 0.23 TCGA-FS-A4F5-06 11 123847920 123847920 C T OR10S1 Missense_Mutation p.G160E 0.56 deleterious(0.03) probably_damaging(0.974) TCGA-FS-A4F5-06 11 123909411 123909411 G A OR10G7 Missense_Mutation p.L100F 0.32 deleterious(0.01) benign(0.102) TCGA-FS-A4F5-06 11 128781738 128781738 C T KCNJ5 Silent p.I190I 0.45 TCGA-FS-A4F5-06 11 130319381 130319381 C T ADAMTS15 Silent p.T171T 0.60 TCGA-FS-A4F5-06 11 134126487 134126487 C T ACAD8 Missense_Mutation p.A52V 0.50 deleterious(0.04) probably_damaging(0.995) TCGA-FS-A4F5-06 11 134131190 134131190 C T ACAD8 Missense_Mutation p.A288V 0.33 deleterious(0) probably_damaging(0.988) TCGA-FS-A4F5-06 11 18195692 18195692 G A MRGPRX4 Missense_Mutation p.D297N 0.55 deleterious(0) possibly_damaging(0.56) TCGA-FS-A4F5-06 11 18636167 18636179 TGGACCGGCTAAT - SPTY2D1 Frame_Shift_Del p.I548Afs*5 0.26 TCGA-FS-A4F5-06 11 19172302 19172302 A T ZDHHC13 Missense_Mutation p.Q183L 0.38 tolerated(0.19) benign(0.001) TCGA-FS-A4F5-06 11 1977616 1977616 G T MRPL23 Missense_Mutation p.R143L 0.52 deleterious(0.02) benign(0.022) TCGA-FS-A4F5-06 11 400004 400004 G A PKP3 Silent p.K437K 0.42 TCGA-FS-A4F5-06 11 40137376 40137376 C T LRRC4C Missense_Mutation p.R156Q 0.35 deleterious(0.04) probably_damaging(0.98) TCGA-FS-A4F5-06 11 418967 418967 G A ANO9 Missense_Mutation p.H653Y 0.41 tolerated(0.16) possibly_damaging(0.794) TCGA-FS-A4F5-06 11 4703474 4703474 G A OR51E2 Silent p.F156F 0.34 TCGA-FS-A4F5-06 11 48239033 48239033 G A OR4B1 Silent p.R224R 0.33 TCGA-FS-A4F5-06 11 4825098 4825098 G A OR52R1 Silent p.F171F 0.26 TCGA-FS-A4F5-06 11 4869915 4869915 G A OR51S1 Missense_Mutation p.P175L 0.50 deleterious(0.03) possibly_damaging(0.608) TCGA-FS-A4F5-06 11 5444196 5444196 C T OR51Q1 Missense_Mutation p.P256S 0.45 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F5-06 11 5530463 5530463 G A UBQLN3 Missense_Mutation p.T109I 0.52 tolerated(0.07) benign(0.002) TCGA-FS-A4F5-06 11 55579708 55579708 C T OR5L1 Missense_Mutation p.L256F 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-FS-A4F5-06 11 55587343 55587343 C T OR5D18 Missense_Mutation p.P80S 0.46 deleterious(0.01) probably_damaging(0.957) TCGA-FS-A4F5-06 11 5566690 5566690 G A OR52H1 Silent p.L22L 0.29 TCGA-FS-A4F5-06 11 55872986 55872986 C T OR8H2 Silent p.S156S 0.38 TCGA-FS-A4F5-06 11 55889939 55889939 C G OR8H3 Missense_Mutation p.L31V 0.39 tolerated(0.24) benign(0.077) TCGA-FS-A4F5-06 11 5602845 5602845 C T OR52B6 Missense_Mutation p.L247F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F5-06 11 56258567 56258567 G A OR5M8 Missense_Mutation p.P94S 0.50 tolerated(0.57) benign(0) TCGA-FS-A4F5-06 11 57946956 57946956 C T OR9Q1 Missense_Mutation p.L14F 0.40 tolerated(0.1) benign(0.144) TCGA-FS-A4F5-06 11 57947008 57947008 T A OR9Q1 Missense_Mutation p.F31Y 0.44 deleterious(0) probably_damaging(0.973) TCGA-FS-A4F5-06 11 58275110 58275110 G A OR5B21 Missense_Mutation p.H157Y 0.47 tolerated_low_confidence(0.12) probably_damaging(0.996) TCGA-FS-A4F5-06 11 5968693 5968693 C T OR56A3 Silent p.F39F 0.35 TCGA-FS-A4F5-06 11 6007457 6007457 G A OR52L1 Missense_Mutation p.S235F 0.42 deleterious(0) benign(0.133) TCGA-FS-A4F5-06 11 60164169 60164169 G A MS4A14 Missense_Mutation p.G40R 0.25 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F5-06 11 60164170 60164170 G A MS4A14 Missense_Mutation p.G40E 0.25 deleterious(0) probably_damaging(0.971) TCGA-FS-A4F5-06 11 6129275 6129275 C T OR56B4 Silent p.A89A 0.50 TCGA-FS-A4F5-06 11 6235746 6235746 G A FAM160A2 Missense_Mutation p.P832S 0.46 tolerated(0.08) probably_damaging(0.926) TCGA-FS-A4F5-06 11 62569260 62569260 G A NXF1 Missense_Mutation p.P197L 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-FS-A4F5-06 11 63064783 63064783 G A SLC22A10 Missense_Mutation p.R172Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 11 63230967 63230967 C T HRASLS5 3'UTR 0.43 TCGA-FS-A4F5-06 11 63235895 63235895 G A HRASLS5 Nonsense_Mutation p.R140* 0.44 TCGA-FS-A4F5-06 11 65396095 65396095 C T PCNXL3 Silent p.F1244F 0.44 TCGA-FS-A4F5-06 11 6943201 6943201 A G OR2D3 Silent p.R323R 0.40 TCGA-FS-A4F5-06 11 70332563 70332563 C T SHANK2 Missense_Mutation p.E1280K 0.40 tolerated(0.14) benign(0.292) TCGA-FS-A4F5-06 11 74705593 74705593 C T NEU3 Missense_Mutation p.P45L 0.34 tolerated(0.25) benign(0.071) TCGA-FS-A4F5-06 11 77436740 77436740 G A RSF1 Nonsense_Mutation p.R195* 0.47 TCGA-FS-A4F5-06 11 7981158 7981158 C T NLRP10 3'UTR 0.33 TCGA-FS-A4F5-06 11 92543137 92543137 G A FAT3 Missense_Mutation p.D3126N 0.46 probably_damaging(0.999) TCGA-FS-A4F5-06 11 92600131 92600131 G A FAT3 Silent p.L3961L 0.40 TCGA-FS-A4F5-06 11 95712378 95712378 A G MAML2 Silent p.L1069L 0.44 TCGA-FS-A4F5-06 11 95825586 95825586 G A MAML2 Missense_Mutation p.L537F 0.48 possibly_damaging(0.648) TCGA-FS-A4F5-06 12 101581202 101581202 C T SLC5A8 Missense_Mutation p.D309N 0.87 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 12 108010917 108010917 G A BTBD11 Missense_Mutation p.E685K 0.78 deleterious(0.01) possibly_damaging(0.721) TCGA-FS-A4F5-06 12 108029159 108029159 C T BTBD11 Missense_Mutation p.S910L 0.81 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F5-06 12 109660610 109660610 A T ACACB Missense_Mutation p.I1229F 0.83 deleterious(0) probably_damaging(0.962) TCGA-FS-A4F5-06 12 113346531 113346531 C T OAS1 Missense_Mutation p.P124L 0.89 tolerated(0.08) benign(0.002) TCGA-FS-A4F5-06 12 122398590 122398590 C T WDR66 Nonsense_Mutation p.R745* 0.90 TCGA-FS-A4F5-06 12 124283832 124283832 G A DNAH10 Missense_Mutation p.E617K 0.76 benign(0.026) TCGA-FS-A4F5-06 12 2074765 2074765 T A DCP1B Missense_Mutation p.I161F 0.50 deleterious(0) possibly_damaging(0.452) TCGA-FS-A4F5-06 12 2706446 2706446 T C CACNA1C Silent p.I948I 0.46 TCGA-FS-A4F5-06 12 27078748 27078748 G A ASUN Silent p.I207I 0.72 TCGA-FS-A4F5-06 12 3149415 3149415 C T TEAD4 Missense_Mutation p.T394I 0.38 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F5-06 12 38710566 38710566 C T ALG10B 5'UTR 0.86 TCGA-FS-A4F5-06 12 46245843 46245843 C T ARID2 Nonsense_Mutation p.Q1313* 0.85 TCGA-FS-A4F5-06 12 47471912 47471912 G A AMIGO2 Missense_Mutation p.R292C 0.90 deleterious(0.01) possibly_damaging(0.614) TCGA-FS-A4F5-06 12 51589769 51589769 G A POU6F1 Missense_Mutation p.S78F 0.70 deleterious(0.02) possibly_damaging(0.831) TCGA-FS-A4F5-06 12 52200305 52200305 G A SCN8A Missense_Mutation p.E1679K 0.47 deleterious(0.02) benign(0.105) TCGA-FS-A4F5-06 12 52448454 52448454 C - NR4A1 Frame_Shift_Del p.L129* 0.25 TCGA-FS-A4F5-06 12 52565324 52565324 G A KRT80 Intron 0.43 TCGA-FS-A4F5-06 12 52841668 52841668 C T KRT6B Missense_Mutation p.D440N 0.48 deleterious(0.01) probably_damaging(0.955) TCGA-FS-A4F5-06 12 53819603 53819603 G A AMHR2 Missense_Mutation p.G251D 0.46 tolerated(0.08) probably_damaging(0.982) TCGA-FS-A4F5-06 12 54791158 54791158 G A ITGA5 Silent p.I1019I 0.18 TCGA-FS-A4F5-06 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.40 TCGA-FS-A4F5-06 12 55863590 55863590 G A OR6C70 Silent p.F111F 0.38 TCGA-FS-A4F5-06 12 56086983 56086983 C T ITGA7 Missense_Mutation p.G889D 0.44 deleterious(0.05) possibly_damaging(0.571) TCGA-FS-A4F5-06 12 56437912 56437912 C T RPS26 Missense_Mutation p.P108S 0.20 deleterious(0.03) unknown(0) TCGA-FS-A4F5-06 12 56824744 56824744 C T TIMELESS Missense_Mutation p.R277Q 0.39 deleterious(0.02) possibly_damaging(0.48) TCGA-FS-A4F5-06 12 56848375 56848375 G A MIP Missense_Mutation p.S8F 0.44 tolerated(0.09) possibly_damaging(0.771) TCGA-FS-A4F5-06 12 57037238 57037238 G A ATP5B Silent p.Y247Y 0.53 TCGA-FS-A4F5-06 12 57167846 57167846 G A HSD17B6 Silent p.R70R 0.53 TCGA-FS-A4F5-06 12 62147517 62147517 C T FAM19A2 Silent p.V90V 0.44 TCGA-FS-A4F5-06 12 62261172 62261172 C T FAM19A2 Missense_Mutation p.G12E 0.31 tolerated_low_confidence(0.21) benign(0.441) TCGA-FS-A4F5-06 12 6575313 6575313 G A VAMP1 Intron 0.85 TCGA-FS-A4F5-06 12 70760539 70760539 G A KCNMB4 Missense_Mutation p.E9K 0.08 tolerated(0.12) benign(0.003) TCGA-FS-A4F5-06 12 7188218 7188218 G A C1R Missense_Mutation p.P527L 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 12 75442073 75442073 C T KCNC2 Missense_Mutation p.G547E 0.40 tolerated(0.07) benign(0.045) TCGA-FS-A4F5-06 12 81242078 81242078 C T LIN7A Silent p.T75T 0.65 TCGA-FS-A4F5-06 13 101727002 101727002 C T NALCN Silent p.K1322K 0.37 TCGA-FS-A4F5-06 13 101777034 101777034 T G NALCN Splice_Site p.X707_splice 0.32 TCGA-FS-A4F5-06 13 101944443 101944443 G A NALCN Silent p.N315N 0.55 TCGA-FS-A4F5-06 13 103718360 103718360 G A SLC10A2 Silent p.P80P 0.28 TCGA-FS-A4F5-06 13 114504661 114504661 G C TMEM255B Missense_Mutation p.G182A 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A4F5-06 13 20978163 20978163 G A CRYL1 3'UTR 0.68 TCGA-FS-A4F5-06 13 23778001 23778001 G A SGCG Nonsense_Mutation p.W56* 0.52 TCGA-FS-A4F5-06 13 28562733 28562733 G A URAD Silent p.F14F 0.37 TCGA-FS-A4F5-06 13 29599806 29599806 G A MTUS2 Missense_Mutation p.G334E 0.52 tolerated(1) benign(0.037) TCGA-FS-A4F5-06 13 31850896 31850896 C T B3GALTL Missense_Mutation p.H280Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 13 32836601 32836601 G T FRY Nonsense_Mutation p.E2590* 0.60 TCGA-FS-A4F5-06 13 33681052 33681052 G A STARD13 Missense_Mutation p.P1023S 0.50 deleterious(0.03) possibly_damaging(0.791) TCGA-FS-A4F5-06 13 46357905 46357905 G A SIAH3 Silent p.I141I 0.41 TCGA-FS-A4F5-06 13 60435628 60435628 G A DIAPH3 Missense_Mutation p.H884Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 13 72147103 72147103 G A DACH1 Missense_Mutation p.P392S 0.22 possibly_damaging(0.885) TCGA-FS-A4F5-06 13 84453886 84453886 G A SLITRK1 Missense_Mutation p.S586L 0.47 tolerated(0.46) benign(0.001) TCGA-FS-A4F5-06 13 95829962 95829962 G A ABCC4 Silent p.L576L 0.22 TCGA-FS-A4F5-06 13 96086220 96086220 C T CLDN10 Nonsense_Mutation p.Q45* 0.25 TCGA-FS-A4F5-06 13 96277043 96277043 C T DZIP1 Silent p.S317S 0.36 TCGA-FS-A4F5-06 14 101491960 101491960 G A MIR1197 RNA 0.85 TCGA-FS-A4F5-06 14 104206311 104206311 G T PPP1R13B Silent p.A814A 0.92 TCGA-FS-A4F5-06 14 106471673 106471673 C T IGHV1-3 Nonsense_Mutation p.W3* 0.87 TCGA-FS-A4F5-06 14 106866548 106866548 G A IGHV3-38 Missense_Mutation p.S69F 0.39 tolerated_low_confidence(0.68) benign(0.003) TCGA-FS-A4F5-06 14 20248715 20248715 C T OR4M1 Silent p.A78A 0.44 TCGA-FS-A4F5-06 14 20612188 20612188 C T OR4N5 Silent p.I98I 0.84 TCGA-FS-A4F5-06 14 22337432 22337432 G A TRAV13-1 Missense_Mutation p.E75K 0.86 tolerated(1) benign(0.002) TCGA-FS-A4F5-06 14 23863310 23863310 C T MYH6 Silent p.Q884Q 0.95 TCGA-FS-A4F5-06 14 23863396 23863396 C T MYH6 Missense_Mutation p.E856K 0.93 tolerated(0.07) possibly_damaging(0.611) TCGA-FS-A4F5-06 14 24776628 24776628 C T CIDEB Silent p.R45R 0.87 TCGA-FS-A4F5-06 14 32561666 32561666 C T ARHGAP5 Silent p.N597N 0.85 TCGA-FS-A4F5-06 14 56232973 56232973 T C RP11-813I20.2 Intron 0.78 TCGA-FS-A4F5-06 14 65252493 65252493 C T SPTB Silent p.K1246K 0.35 TCGA-FS-A4F5-06 14 69805411 69805411 C T GALNT16 Silent p.I337I 0.88 TCGA-FS-A4F5-06 14 70634224 70634224 C T SLC8A3 Missense_Mutation p.G306R 1.00 tolerated(0.43) benign(0.359) TCGA-FS-A4F5-06 14 70714062 70714062 G A ADAM21P1 RNA 0.19 TCGA-FS-A4F5-06 14 70924532 70924532 C T ADAM21 Missense_Mutation p.P106S 0.52 tolerated(0.08) benign(0.378) TCGA-FS-A4F5-06 14 75329636 75329636 C T PROX2 Intron 0.89 TCGA-FS-A4F5-06 14 79117567 79117567 C T NRXN3 5'UTR 0.84 TCGA-FS-A4F5-06 14 81251578 81251578 G A CEP128 Silent p.A624A 0.83 TCGA-FS-A4F5-06 14 92265383 92265383 G A TC2N Missense_Mutation p.P196L 0.25 tolerated(0.21) benign(0.038) TCGA-FS-A4F5-06 14 96848745 96848745 C T GSKIP Missense_Mutation p.S54L 0.76 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 15 101024834 101024834 C T CERS3 Missense_Mutation p.E110K 0.58 tolerated(0.84) possibly_damaging(0.761) TCGA-FS-A4F5-06 15 101717755 101717755 G A CHSY1 Silent p.V749V 0.36 TCGA-FS-A4F5-06 15 20496630 20496630 G A CHEK2P2 RNA 0.21 TCGA-FS-A4F5-06 15 24924051 24924051 A G NPAP1 Missense_Mutation p.T1013A 0.22 tolerated(1) benign(0.031) TCGA-FS-A4F5-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.50 TCGA-FS-A4F5-06 15 38229547 38229547 G A TMCO5A Missense_Mutation p.E89K 0.41 deleterious(0.03) probably_damaging(0.928) TCGA-FS-A4F5-06 15 40093616 40093616 G A GPR176 Missense_Mutation p.A422V 0.58 tolerated(0.67) benign(0.001) TCGA-FS-A4F5-06 15 41679741 41679741 G A NDUFAF1 Silent p.F295F 0.47 TCGA-FS-A4F5-06 15 42059304 42059304 C T MGA Silent p.L3008L 0.22 TCGA-FS-A4F5-06 15 42379497 42379497 C T PLA2G4D Splice_Site p.X85_splice 0.27 TCGA-FS-A4F5-06 15 43527730 43527730 C T TGM5 Missense_Mutation p.D551N 0.26 tolerated(0.59) benign(0.21) TCGA-FS-A4F5-06 15 45250611 45250611 G A C15orf43 Missense_Mutation p.V63I 0.65 tolerated(0.09) benign(0.014) TCGA-FS-A4F5-06 15 45545629 45545629 G A SLC28A2 Splice_Site p.X28_splice 0.57 TCGA-FS-A4F5-06 15 51504750 51504750 C G CYP19A1 Missense_Mutation p.D344H 0.64 deleterious(0.01) possibly_damaging(0.882) TCGA-FS-A4F5-06 15 51687050 51687050 G A GLDN Missense_Mutation p.G187E 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-FS-A4F5-06 15 52503971 52503971 A G MYO5C Missense_Mutation p.S1418P 0.56 deleterious(0) probably_damaging(0.982) TCGA-FS-A4F5-06 15 57731656 57731656 C T CGNL1 Missense_Mutation p.L487F 0.61 deleterious(0) possibly_damaging(0.795) TCGA-FS-A4F5-06 15 64686287 64686287 C T TRIP4 Missense_Mutation p.P82S 0.62 tolerated(0.63) benign(0.001) TCGA-FS-A4F5-06 15 72455735 72455735 C T GRAMD2 Silent p.K276K 0.25 TCGA-FS-A4F5-06 15 74623427 74623427 G A CCDC33 Missense_Mutation p.E551K 0.14 deleterious(0) probably_damaging(0.953) TCGA-FS-A4F5-06 15 77406717 77406717 G A PEAK1 Silent p.L1674L 0.27 TCGA-FS-A4F5-06 15 79750313 79750313 G A KIAA1024 Silent p.R608R 0.53 TCGA-FS-A4F5-06 15 83686847 83686847 T C BTBD1 Missense_Mutation p.Q474R 0.68 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 15 85461792 85461792 C T SLC28A1 Missense_Mutation p.S278F 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 15 94841723 94841723 T C MCTP2 Missense_Mutation p.S77P 0.24 tolerated(0.11) possibly_damaging(0.616) TCGA-FS-A4F5-06 16 11362868 11362868 C T TNP2 Silent p.K84K 0.41 TCGA-FS-A4F5-06 16 1291208 1291208 G A TPSAB1 Missense_Mutation p.R39K 0.22 tolerated(0.88) benign(0.001) TCGA-FS-A4F5-06 16 1568274 1568274 G A IFT140 Silent p.I1375I 0.31 TCGA-FS-A4F5-06 16 16253384 16253384 G A ABCC6 Silent p.I1230I 0.41 TCGA-FS-A4F5-06 16 16282829 16282829 G A ABCC6 Silent p.V546V 0.23 TCGA-FS-A4F5-06 16 1816055 1816055 C T MAPK8IP3 Silent p.I846I 0.45 TCGA-FS-A4F5-06 16 18828730 18828730 G A SMG1 Silent p.A3319A 0.44 TCGA-FS-A4F5-06 16 21261887 21261887 G A ANKS4B Missense_Mutation p.D334N 0.46 tolerated(0.28) benign(0.003) TCGA-FS-A4F5-06 16 2163283 2163283 G A PKD1 Missense_Mutation p.P955L 0.40 probably_damaging(0.96) TCGA-FS-A4F5-06 16 23703323 23703323 G A ERN2 Silent p.P827P 0.49 TCGA-FS-A4F5-06 16 23703324 23703324 G A ERN2 Missense_Mutation p.P827L 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 16 24358111 24358111 G A CACNG3 Missense_Mutation p.E90K 0.14 deleterious(0.03) possibly_damaging(0.526) TCGA-FS-A4F5-06 16 2483003 2483003 T G CCNF Missense_Mutation p.S71R 0.33 deleterious(0.02) probably_damaging(0.97) TCGA-FS-A4F5-06 16 2813976 2813976 C T SRRM2 Silent p.D1149D 0.18 TCGA-FS-A4F5-06 16 30036996 30036996 C T FAM57B Intron 0.36 TCGA-FS-A4F5-06 16 30099910 30099910 A T TBX6 Missense_Mutation p.N265K 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 16 30762446 30762446 C T PHKG2 Missense_Mutation p.R39C 0.50 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 16 31374520 31374520 G A ITGAX Missense_Mutation p.G512E 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 16 3299467 3299467 C T MEFV Silent p.R408R 0.36 TCGA-FS-A4F5-06 16 46706386 46706386 T A VPS35 Splice_Site p.X387_splice 0.47 TCGA-FS-A4F5-06 16 48245080 48245080 A T ABCC11 Missense_Mutation p.Y463N 0.44 deleterious(0) probably_damaging(0.948) TCGA-FS-A4F5-06 16 50707515 50707515 C T SNX20 Silent p.E251E 0.48 TCGA-FS-A4F5-06 16 50745703 50745703 A T NOD2 Missense_Mutation p.R627S 0.33 tolerated(0.45) benign(0.011) TCGA-FS-A4F5-06 16 5115824 5115824 G A C16orf89 Missense_Mutation p.A29V 0.38 tolerated(0.18) benign(0.184) TCGA-FS-A4F5-06 16 61747755 61747755 C T CDH8 Silent p.K548K 0.31 TCGA-FS-A4F5-06 16 70897032 70897032 T A HYDIN Missense_Mutation p.E3842V 0.44 possibly_damaging(0.895) TCGA-FS-A4F5-06 16 70972519 70972519 C T HYDIN Silent p.K2331K 0.33 TCGA-FS-A4F5-06 16 71957234 71957234 C T IST1 Missense_Mutation p.P281L 0.34 tolerated(0.19) unknown(0) TCGA-FS-A4F5-06 16 72164554 72164554 C T PMFBP1 Silent p.R505R 0.50 TCGA-FS-A4F5-06 16 74443752 74443752 C T CLEC18B Missense_Mutation p.M412I 0.09 tolerated_low_confidence(0.44) benign(0.001) TCGA-FS-A4F5-06 16 83636071 83636071 C T CDH13 Missense_Mutation p.P372S 0.33 deleterious(0.03) possibly_damaging(0.599) TCGA-FS-A4F5-06 16 84035964 84035964 G A NECAB2 3'UTR 0.43 TCGA-FS-A4F5-06 16 88968044 88968044 T A CBFA2T3 Nonsense_Mutation p.K58* 0.60 TCGA-FS-A4F5-06 16 921242 921242 G A LMF1 Missense_Mutation p.P333S 0.36 tolerated(0.42) benign(0.05) TCGA-FS-A4F5-06 16 9984935 9984935 C T GRIN2A Missense_Mutation p.D344N 0.47 deleterious(0.04) benign(0.002) TCGA-FS-A4F5-06 17 10304634 10304634 G A MYH8 Silent p.I1022I 0.52 TCGA-FS-A4F5-06 17 10354108 10354108 C T MYH4 Missense_Mutation p.E1324K 0.17 deleterious(0) possibly_damaging(0.685) TCGA-FS-A4F5-06 17 10358358 10358358 C T MYH4 Missense_Mutation p.E779K 0.30 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F5-06 17 12639595 12639595 C T MYOCD Missense_Mutation p.S178F 0.30 tolerated(0.08) benign(0.17) TCGA-FS-A4F5-06 17 14063198 14063198 T C COX10 Missense_Mutation p.F210S 0.52 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 17 15231335 15231335 C T TEKT3 Missense_Mutation p.D213N 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A4F5-06 17 15443702 15443702 A G TVP23C Intron 0.44 TCGA-FS-A4F5-06 17 17750954 17750954 G A TOM1L2 Silent p.L507L 0.70 TCGA-FS-A4F5-06 17 2908719 2908719 C T RAP1GAP2 Silent p.P419P 0.20 TCGA-FS-A4F5-06 17 3030711 3030711 G A OR1G1 Silent p.I45I 0.37 TCGA-FS-A4F5-06 17 3119100 3119100 C T OR1A1 Silent p.L62L 0.33 TCGA-FS-A4F5-06 17 3119201 3119201 G A OR1A1 Missense_Mutation p.G96E 0.25 tolerated(0.2) benign(0.048) TCGA-FS-A4F5-06 17 32483253 32483253 G A ASIC2 Missense_Mutation p.S100F 0.67 deleterious(0.02) possibly_damaging(0.908) TCGA-FS-A4F5-06 17 32583799 32583799 G A CCL2 Missense_Mutation p.D85N 0.26 tolerated(0.39) benign(0.06) TCGA-FS-A4F5-06 17 32612690 32612690 G A CCL11 5'UTR 0.23 TCGA-FS-A4F5-06 17 34340219 34340219 C T CCL23 3'UTR 0.26 TCGA-FS-A4F5-06 17 37922621 37922621 C T IKZF3 Missense_Mutation p.E318K 0.25 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 17 38031517 38031517 G A ZPBP2 Missense_Mutation p.R240Q 0.17 tolerated(0.2) benign(0.371) TCGA-FS-A4F5-06 17 38711757 38711757 C T CCR7 Missense_Mutation p.G125D 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A4F5-06 17 39723557 39723557 C T KRT9 Missense_Mutation p.G614R 0.31 unknown(0) TCGA-FS-A4F5-06 17 40354389 40354389 G A STAT5B Missense_Mutation p.P736S 0.60 tolerated(0.2) possibly_damaging(0.857) TCGA-FS-A4F5-06 17 42478219 42478219 G A GPATCH8 Missense_Mutation p.P409L 0.55 tolerated(0.1) possibly_damaging(0.791) TCGA-FS-A4F5-06 17 42828497 42828497 C T DBF4B Missense_Mutation p.T575I 0.23 deleterious_low_confidence(0) benign(0.008) TCGA-FS-A4F5-06 17 42828498 42828498 C T DBF4B Silent p.T575T 0.22 TCGA-FS-A4F5-06 17 4721600 4721600 C T PLD2 Silent p.F643F 0.35 TCGA-FS-A4F5-06 17 47788683 47788683 G A FAM117A Silent p.F432F 0.64 TCGA-FS-A4F5-06 17 49710963 49710963 G A CA10 Silent p.L280L 0.62 TCGA-FS-A4F5-06 17 53798372 53798372 C T TMEM100 Silent p.T20T 0.30 TCGA-FS-A4F5-06 17 56344924 56344924 C T LPO Silent p.F636F 0.22 TCGA-FS-A4F5-06 17 56352921 56352921 G A MPO Silent p.I449I 0.26 TCGA-FS-A4F5-06 17 56355504 56355504 G A MPO Silent p.I296I 0.32 TCGA-FS-A4F5-06 17 62045702 62045702 G A SCN4A Silent p.I239I 0.44 TCGA-FS-A4F5-06 17 62855832 62855832 T C LRRC37A3 Missense_Mutation p.T1478A 0.58 deleterious(0.01) possibly_damaging(0.497) TCGA-FS-A4F5-06 17 63156455 63156455 C T RGS9 Nonsense_Mutation p.Q104* 0.37 TCGA-FS-A4F5-06 17 649279 649279 G A GEMIN4 Silent p.D668D 0.25 TCGA-FS-A4F5-06 17 71232516 71232516 G A C17orf80 Missense_Mutation p.G299R 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-FS-A4F5-06 17 71354291 71354291 G A SDK2 Silent p.I1840I 0.36 TCGA-FS-A4F5-06 17 72937553 72937553 G A OTOP3 Missense_Mutation p.E47K 0.52 tolerated(0.14) benign(0.219) TCGA-FS-A4F5-06 17 72937999 72937999 C T OTOP3 Missense_Mutation p.S165F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F5-06 17 7329866 7329866 G A C17orf74 Missense_Mutation p.E186K 0.67 deleterious(0.02) possibly_damaging(0.801) TCGA-FS-A4F5-06 17 7464253 7464253 G A TNFSF12-TNFSF13 3'UTR 0.74 TCGA-FS-A4F5-06 17 79177318 79177318 G A AZI1 Missense_Mutation p.S202F 0.33 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F5-06 17 80521331 80521331 C T FOXK2 Missense_Mutation p.A174V 0.28 deleterious(0.03) benign(0.342) TCGA-FS-A4F5-06 17 80521332 80521332 C T FOXK2 Silent p.A174A 0.28 TCGA-FS-A4F5-06 18 10680264 10680264 C T PIEZO2 Silent p.Q2515Q 0.60 TCGA-FS-A4F5-06 18 14533088 14533088 C T POTEC Missense_Mutation p.E343K 0.17 deleterious(0.04) possibly_damaging(0.663) TCGA-FS-A4F5-06 18 14763875 14763875 G A ANKRD30B Silent p.R337R 0.31 TCGA-FS-A4F5-06 18 25565092 25565092 G A CDH2 Missense_Mutation p.S694F 0.36 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 18 28986101 28986101 C T DSG4 Silent p.I566I 0.24 TCGA-FS-A4F5-06 18 29867531 29867531 G A GAREM Silent p.V343V 0.59 TCGA-FS-A4F5-06 18 30093396 30093396 C T WBP11P1 RNA 0.53 TCGA-FS-A4F5-06 18 30825328 30825328 C T CCDC178 Missense_Mutation p.D492N 0.63 tolerated(0.93) benign(0.004) TCGA-FS-A4F5-06 18 31323668 31323668 C T ASXL3 Nonsense_Mutation p.Q1286* 0.18 TCGA-FS-A4F5-06 18 32398181 32398181 C T DTNA Missense_Mutation p.R255C 0.63 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F5-06 18 39647477 39647477 G A PIK3C3 Silent p.Q883Q 0.18 TCGA-FS-A4F5-06 18 47769279 47769279 G A CCDC11 Nonsense_Mutation p.Q402* 0.28 TCGA-FS-A4F5-06 18 47917627 47917627 C T SKA1 Missense_Mutation p.H195Y 0.38 tolerated(0.15) benign(0.022) TCGA-FS-A4F5-06 18 52551603 52551603 G A RAB27B Missense_Mutation p.M93I 0.48 deleterious(0) possibly_damaging(0.895) TCGA-FS-A4F5-06 18 52946789 52946789 G A TCF4 Silent p.F318F 0.59 TCGA-FS-A4F5-06 18 54339780 54339780 C T WDR7 Missense_Mutation p.L12F 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 18 59157994 59157994 G A CDH20 Missense_Mutation p.E70K 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 18 59483100 59483100 C T RNF152 Silent p.V199V 0.57 TCGA-FS-A4F5-06 18 61600336 61600336 C T SERPINB10 Missense_Mutation p.H230Y 0.61 tolerated(1) benign(0.015) TCGA-FS-A4F5-06 18 63489391 63489391 G A CDH7 Missense_Mutation p.D234N 0.67 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 18 67231825 67231825 C T DOK6 Missense_Mutation p.H57Y 0.59 tolerated(0.79) benign(0.324) TCGA-FS-A4F5-06 18 76754683 76754683 G A SALL3 Missense_Mutation p.E898K 0.41 deleterious(0) possibly_damaging(0.592) TCGA-FS-A4F5-06 18 9396355 9396355 C T TWSG1 Missense_Mutation p.P101S 0.27 deleterious(0.01) probably_damaging(0.95) TCGA-FS-A4F5-06 19 10227829 10227829 G A EIF3G Silent p.P112P 0.38 TCGA-FS-A4F5-06 19 12691762 12691762 G A ZNF490 Missense_Mutation p.S376F 0.54 deleterious(0.04) possibly_damaging(0.682) TCGA-FS-A4F5-06 19 13192546 13192546 C T NFIX Silent p.I377I 0.28 TCGA-FS-A4F5-06 19 13923946 13923946 C T ZSWIM4 Missense_Mutation p.P383L 0.63 deleterious(0.01) possibly_damaging(0.851) TCGA-FS-A4F5-06 19 13941282 13941282 G A ZSWIM4 Silent p.A796A 0.45 TCGA-FS-A4F5-06 19 14754919 14754919 C T EMR3 Splice_Site p.X350_splice 0.30 TCGA-FS-A4F5-06 19 1486852 1486852 G A PCSK4 Silent p.I356I 0.50 TCGA-FS-A4F5-06 19 15728902 15728902 C T AD000091.2 5'Flank 0.45 TCGA-FS-A4F5-06 19 15769135 15769135 C T CYP4F3 Missense_Mutation p.P393S 0.45 tolerated(0.12) possibly_damaging(0.764) TCGA-FS-A4F5-06 19 1581196 1581196 G A MBD3 Missense_Mutation p.P191L 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 19 16025448 16025448 C T CYP4F11 Silent p.G426G 0.40 TCGA-FS-A4F5-06 19 16535919 16535919 G A EPS15L1 Missense_Mutation p.P256L 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-FS-A4F5-06 19 16535920 16535920 G A EPS15L1 Missense_Mutation p.P256S 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-FS-A4F5-06 19 16883983 16883983 C T NWD1 Silent p.F819F 0.50 TCGA-FS-A4F5-06 19 19656328 19656328 G A CILP2 Missense_Mutation p.E992K 0.51 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 19 19744834 19744834 G A GMIP Silent p.I750I 0.42 TCGA-FS-A4F5-06 19 2111297 2111297 G A AP3D1 Missense_Mutation p.S991F 0.31 deleterious(0.03) probably_damaging(0.919) TCGA-FS-A4F5-06 19 24102081 24102081 C T ZNF726 Intron 0.50 TCGA-FS-A4F5-06 19 2934718 2934718 G A ZNF77 Missense_Mutation p.P136L 0.19 tolerated(0.87) benign(0.025) TCGA-FS-A4F5-06 19 2934719 2934719 G A ZNF77 Missense_Mutation p.P136S 0.20 tolerated(0.49) possibly_damaging(0.543) TCGA-FS-A4F5-06 19 2987189 2987189 G A TLE6 Missense_Mutation p.R165Q 0.48 tolerated(1) benign(0.002) TCGA-FS-A4F5-06 19 31768340 31768340 C T TSHZ3 Missense_Mutation p.D787N 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A4F5-06 19 33706862 33706862 C T SLC7A10 Missense_Mutation p.G57S 0.44 deleterious(0) probably_damaging(0.981) TCGA-FS-A4F5-06 19 35823827 35823827 G A CD22 Missense_Mutation p.E138K 0.28 tolerated(0.45) benign(0.023) TCGA-FS-A4F5-06 19 3589508 3589508 G A GIPC3 Silent p.E220E 0.47 TCGA-FS-A4F5-06 19 36004477 36004477 C T DMKN 5'UTR 0.33 TCGA-FS-A4F5-06 19 37854364 37854364 G A HKR1 Missense_Mutation p.R556K 0.30 tolerated(0.42) benign(0.008) TCGA-FS-A4F5-06 19 38028070 38028070 G A ZNF793 Silent p.G170G 0.53 TCGA-FS-A4F5-06 19 39660384 39660384 C T PAK4 Missense_Mutation p.P64L 0.45 tolerated(1) benign(0.223) TCGA-FS-A4F5-06 19 40376709 40376709 T G FCGBP Missense_Mutation p.S3905R 0.08 possibly_damaging(0.637) TCGA-FS-A4F5-06 19 41206337 41206337 G A ADCK4 Missense_Mutation p.P305S 0.58 tolerated(0.06) possibly_damaging(0.794) TCGA-FS-A4F5-06 19 41522698 41522698 C T CYP2B6 Missense_Mutation p.P481L 0.09 deleterious(0.01) possibly_damaging(0.743) TCGA-FS-A4F5-06 19 43258736 43258736 C A PSG8 Missense_Mutation p.G331V 0.28 tolerated(0.17) probably_damaging(1) TCGA-FS-A4F5-06 19 43382351 43382351 C T PSG1 Silent p.G48G 0.28 TCGA-FS-A4F5-06 19 43674267 43674267 G A PSG5 Missense_Mutation p.P330S 0.55 tolerated(0.3) benign(0.006) TCGA-FS-A4F5-06 19 43690670 43690670 C T PSG5 5'UTR 0.35 TCGA-FS-A4F5-06 19 43998885 43998885 G A PHLDB3 Missense_Mutation p.S373F 0.72 deleterious(0) possibly_damaging(0.86) TCGA-FS-A4F5-06 19 44377519 44377519 G A ZNF404 Missense_Mutation p.R283C 0.88 tolerated(0.1) benign(0.002) TCGA-FS-A4F5-06 19 44570657 44570657 C T ZNF223 Missense_Mutation p.H226Y 0.57 deleterious(0.01) benign(0.283) TCGA-FS-A4F5-06 19 44932917 44932917 C T ZNF229 Missense_Mutation p.G680E 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 19 45179669 45179669 G A CEACAM19 Missense_Mutation p.R184K 0.25 tolerated(0.09) probably_damaging(0.918) TCGA-FS-A4F5-06 19 45179670 45179670 G A CEACAM19 Silent p.R184R 0.24 TCGA-FS-A4F5-06 19 45262726 45262726 C A BCL3 Missense_Mutation p.P407T 0.59 deleterious(0) unknown(0) TCGA-FS-A4F5-06 19 45368754 45368754 C T PVRL2 Silent p.F105F 0.33 TCGA-FS-A4F5-06 19 46733364 46733364 G A IGFL1 Splice_Site p.X9_splice 0.28 TCGA-FS-A4F5-06 19 46832714 46832714 C T HIF3A Missense_Mutation p.P564L 0.33 tolerated_low_confidence(0.13) benign(0.003) TCGA-FS-A4F5-06 19 46915326 46915326 G A CCDC8 Missense_Mutation p.R248C 0.31 possibly_damaging(0.541) TCGA-FS-A4F5-06 19 48601490 48601490 C T PLA2G4C Missense_Mutation p.M168I 0.63 tolerated(0.56) benign(0.006) TCGA-FS-A4F5-06 19 48801292 48801292 C T CCDC114 Silent p.P452P 0.59 TCGA-FS-A4F5-06 19 49129484 49129484 G A SPHK2 Missense_Mutation p.G126R 0.68 tolerated(0.9) benign(0.085) TCGA-FS-A4F5-06 19 49129485 49129485 G A SPHK2 Missense_Mutation p.G126E 0.68 tolerated(0.27) possibly_damaging(0.71) TCGA-FS-A4F5-06 19 49442759 49442759 C T DHDH Silent p.A140A 0.21 TCGA-FS-A4F5-06 19 49557612 49557612 G A CGB7 Missense_Mutation p.P145L 0.25 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A4F5-06 19 50099700 50099700 T C PRR12 Missense_Mutation p.V703A 0.18 benign(0.294) TCGA-FS-A4F5-06 19 50099959 50099959 C G PRR12 Missense_Mutation p.D789E 0.52 possibly_damaging(0.621) TCGA-FS-A4F5-06 19 50099988 50099988 C T PRR12 Missense_Mutation p.P799L 0.43 possibly_damaging(0.851) TCGA-FS-A4F5-06 19 50099989 50099989 C T PRR12 Silent p.P799P 0.43 TCGA-FS-A4F5-06 19 50958778 50958778 G A MYBPC2 Missense_Mutation p.E739K 0.55 deleterious(0.01) possibly_damaging(0.7) TCGA-FS-A4F5-06 19 50958831 50958831 G A MYBPC2 Silent p.K756K 0.34 TCGA-FS-A4F5-06 19 51165484 51165484 G A SHANK1 Missense_Mutation p.S2075F 0.79 unknown(0) TCGA-FS-A4F5-06 19 51411875 51411875 C T KLK4 Silent p.G145G 0.29 TCGA-FS-A4F5-06 19 52272265 52272265 C T FPR2 Silent p.F118F 0.56 TCGA-FS-A4F5-06 19 52785399 52785399 C T ZNF766 Silent p.F18F 0.27 TCGA-FS-A4F5-06 19 54848879 54848879 G A LILRA4 Silent p.V248V 0.66 TCGA-FS-A4F5-06 19 55501547 55501547 C T NLRP2 Silent p.L842L 0.57 TCGA-FS-A4F5-06 19 56321563 56321563 G A NLRP11 Missense_Mutation p.S138F 0.35 tolerated(0.13) benign(0.154) TCGA-FS-A4F5-06 19 56423853 56423853 C T NLRP13 Missense_Mutation p.D444N 0.20 tolerated(0.36) benign(0.024) TCGA-FS-A4F5-06 19 56539576 56539576 G A NLRP5 Silent p.L659L 0.19 TCGA-FS-A4F5-06 19 56701340 56701340 G A ZSCAN5B Silent p.F448F 0.26 TCGA-FS-A4F5-06 19 57175663 57175663 C T ZNF835 Missense_Mutation p.G302S 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 19 6374516 6374516 C T ALKBH7 Missense_Mutation p.P140L 0.52 deleterious(0.03) benign(0.175) TCGA-FS-A4F5-06 19 7122765 7122765 G A INSR Missense_Mutation p.P1130L 0.35 tolerated(0.27) benign(0.353) TCGA-FS-A4F5-06 19 746418 746418 C T PALM Silent p.T256T 0.47 TCGA-FS-A4F5-06 19 7806546 7806546 G T CD209 3'UTR 0.48 TCGA-FS-A4F5-06 19 7977033 7977033 G A MAP2K7 Splice_Site p.X360_splice 0.33 TCGA-FS-A4F5-06 19 9048215 9048215 G A MUC16 Missense_Mutation p.S11139L 0.43 benign(0.003) TCGA-FS-A4F5-06 19 9049492 9049492 G A MUC16 Silent p.A10713A 0.45 TCGA-FS-A4F5-06 19 9057898 9057898 C T MUC16 Missense_Mutation p.D9850N 0.20 unknown(0) TCGA-FS-A4F5-06 19 9059273 9059273 G A MUC16 Silent p.S9391S 0.51 TCGA-FS-A4F5-06 19 9060392 9060392 C T MUC16 Silent p.K9018K 0.40 TCGA-FS-A4F5-06 19 9075252 9075252 G A MUC16 Missense_Mutation p.S4065F 0.32 unknown(0) TCGA-FS-A4F5-06 1 101196777 101196777 G A VCAM1 Missense_Mutation p.E410K 0.75 deleterious(0.04) benign(0.075) TCGA-FS-A4F5-06 1 10431281 10431281 C T KIF1B Missense_Mutation p.P1590L 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-FS-A4F5-06 1 10720328 10720328 G A CASZ1 Silent p.P257P 0.20 TCGA-FS-A4F5-06 1 110465834 110465834 C T CSF1 Silent p.I197I 0.67 TCGA-FS-A4F5-06 1 111060342 111060342 G A KCNA10 Silent p.R356R 0.61 TCGA-FS-A4F5-06 1 113460450 113460450 G A SLC16A1 Missense_Mutation p.A193V 0.31 deleterious(0) possibly_damaging(0.845) TCGA-FS-A4F5-06 1 113642835 113642835 T C LRIG2 Missense_Mutation p.I392T 0.39 tolerated(0.95) benign(0.003) TCGA-FS-A4F5-06 1 114280739 114280739 G A PHTF1 Silent p.F108F 0.79 TCGA-FS-A4F5-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.77 tolerated(0.06) benign(0.006) TCGA-FS-A4F5-06 1 117297465 117297465 C T CD2 Silent p.L92L 0.60 TCGA-FS-A4F5-06 1 12887382 12887382 G A PRAMEF11 Silent p.L159L 0.23 TCGA-FS-A4F5-06 1 12919788 12919788 T C PRAMEF2 Silent p.G176G 0.17 TCGA-FS-A4F5-06 1 1309550 1309550 C A AURKAIP1 Nonsense_Mutation p.E110* 0.69 TCGA-FS-A4F5-06 1 144994716 144994716 G A PDE4DIP Missense_Mutation p.R6C 0.10 deleterious(0) possibly_damaging(0.891) TCGA-FS-A4F5-06 1 145304477 145304477 C T NBPF10 Silent p.V470V 0.20 TCGA-FS-A4F5-06 1 145762276 145762276 A T PDZK1 Nonsense_Mutation p.K485* 0.51 TCGA-FS-A4F5-06 1 152128608 152128608 C T RPTN Missense_Mutation p.D323N 0.44 tolerated(0.08) benign(0.059) TCGA-FS-A4F5-06 1 152278589 152278589 C T FLG Missense_Mutation p.D2925N 0.14 benign(0.095) TCGA-FS-A4F5-06 1 152326311 152326311 C T FLG2 Silent p.Q1317Q 0.42 TCGA-FS-A4F5-06 1 152329028 152329028 C T FLG2 Missense_Mutation p.E412K 0.19 unknown(0) TCGA-FS-A4F5-06 1 152732825 152732825 G A KPRP Missense_Mutation p.R254K 0.52 deleterious(0.02) probably_damaging(0.99) TCGA-FS-A4F5-06 1 154473970 154473970 G A SHE Missense_Mutation p.S178F 0.55 deleterious(0) possibly_damaging(0.491) TCGA-FS-A4F5-06 1 154516517 154516517 G A TDRD10 Silent p.G194G 0.16 TCGA-FS-A4F5-06 1 154516518 154516518 G A TDRD10 Missense_Mutation p.E195K 0.16 deleterious(0.02) possibly_damaging(0.739) TCGA-FS-A4F5-06 1 154516521 154516521 G C TDRD10 Missense_Mutation p.A196P 0.15 tolerated(0.06) possibly_damaging(0.767) TCGA-FS-A4F5-06 1 154920159 154920159 G A PBXIP1 Missense_Mutation p.L233F 0.38 tolerated(1) benign(0.002) TCGA-FS-A4F5-06 1 154962153 154962153 T C FLAD1 Missense_Mutation p.L412P 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 1 155156498 155156498 C T TRIM46 Silent p.F704F 0.41 TCGA-FS-A4F5-06 1 155823530 155823530 G A GON4L Silent p.S14S 0.43 TCGA-FS-A4F5-06 1 155936216 155936216 G - ARHGEF2 Frame_Shift_Del p.R111Efs*36 0.29 TCGA-FS-A4F5-06 1 156263909 156263909 A G C1orf85 Missense_Mutation p.L233P 0.38 tolerated(0.1) possibly_damaging(0.894) TCGA-FS-A4F5-06 1 156622586 156622586 C T BCAN Missense_Mutation p.S615F 0.62 deleterious(0.01) benign(0.413) TCGA-FS-A4F5-06 1 156639980 156639980 G A NES Missense_Mutation p.P1334S 0.47 deleterious(0.02) possibly_damaging(0.46) TCGA-FS-A4F5-06 1 156816326 156816326 G A INSRR Nonsense_Mutation p.R599* 0.42 TCGA-FS-A4F5-06 1 158224882 158224882 G A CD1A Missense_Mutation p.E23K 0.38 tolerated(0.1) benign(0.079) TCGA-FS-A4F5-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.42 deleterious(0.05) benign(0.049) TCGA-FS-A4F5-06 1 158299203 158299203 C T CD1B Silent p.V281V 0.45 TCGA-FS-A4F5-06 1 158908248 158908248 G A PYHIN1 Silent p.Q109Q 0.39 TCGA-FS-A4F5-06 1 160604595 160604595 C T SLAMF1 Missense_Mutation p.D170N 0.60 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 1 161138347 161138347 G A PPOX Silent p.L199L 0.45 TCGA-FS-A4F5-06 1 166891994 166891994 G A ILDR2 Silent p.F349F 0.40 TCGA-FS-A4F5-06 1 167095812 167095812 G A DUSP27 Missense_Mutation p.E482K 0.38 deleterious(0.05) benign(0.107) TCGA-FS-A4F5-06 1 167096661 167096661 G A DUSP27 Missense_Mutation p.D765N 0.58 deleterious(0) possibly_damaging(0.791) TCGA-FS-A4F5-06 1 16748444 16748444 G A SPATA21 Silent p.F19F 0.74 TCGA-FS-A4F5-06 1 167874414 167874414 G A ADCY10 5'UTR 0.53 TCGA-FS-A4F5-06 1 168215769 168215769 C T SFT2D2 3'UTR 0.50 TCGA-FS-A4F5-06 1 169586524 169586524 C T SELP Missense_Mutation p.E75K 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 1 169698418 169698418 G A SELE Silent p.F333F 0.32 TCGA-FS-A4F5-06 1 171080110 171080110 G A FMO3 Missense_Mutation p.E267K 0.47 tolerated(0.14) benign(0.168) TCGA-FS-A4F5-06 1 17266548 17266548 G A CROCC Missense_Mutation p.E590K 0.28 probably_damaging(0.921) TCGA-FS-A4F5-06 1 173506150 173506150 C T SLC9C2 Missense_Mutation p.G529E 0.50 tolerated(0.24) possibly_damaging(0.9) TCGA-FS-A4F5-06 1 173628523 173628523 G A ANKRD45 Missense_Mutation p.S12L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-FS-A4F5-06 1 175063237 175063237 C T TNN Missense_Mutation p.S479F 0.33 deleterious(0) probably_damaging(0.982) TCGA-FS-A4F5-06 1 175328826 175328826 G A TNR Missense_Mutation p.P966S 0.34 tolerated(0.09) possibly_damaging(0.732) TCGA-FS-A4F5-06 1 176564267 176564267 G A PAPPA2 Silent p.L509L 0.11 TCGA-FS-A4F5-06 1 176564298 176564298 C T PAPPA2 Missense_Mutation p.R520W 0.47 deleterious(0.02) probably_damaging(0.912) TCGA-FS-A4F5-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.47 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F5-06 1 185175889 185175889 C T SWT1 Missense_Mutation p.R656C 0.38 tolerated(1) benign(0) TCGA-FS-A4F5-06 1 196643044 196643044 G A CFH Missense_Mutation p.G101E 0.40 tolerated(0.08) possibly_damaging(0.895) TCGA-FS-A4F5-06 1 197029607 197029607 C T F13B Missense_Mutation p.E232K 0.71 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A4F5-06 1 197411474 197411474 C T CRB1 Intron 0.44 TCGA-FS-A4F5-06 1 202702925 202702925 G A KDM5B Silent p.L1171L 0.31 TCGA-FS-A4F5-06 1 203015104 203015104 C T PPFIA4 Silent p.L39L 0.41 TCGA-FS-A4F5-06 1 206821195 206821195 G A DYRK3 Missense_Mutation p.G218R 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 1 211192334 211192334 C T KCNH1 Missense_Mutation p.G275R 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 1 216850658 216850658 C T ESRRG Missense_Mutation p.G83R 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F5-06 1 223438058 223438058 C T SUSD4 Missense_Mutation p.G213E 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 1 223940530 223940530 C T CAPN2 Missense_Mutation p.S336F 0.39 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F5-06 1 223940531 223940531 C T CAPN2 Silent p.S336S 0.39 TCGA-FS-A4F5-06 1 228553785 228553785 C T OBSCN Silent p.S7315S 0.41 TCGA-FS-A4F5-06 1 22965712 22965712 C T C1QA Nonsense_Mutation p.R184* 0.17 TCGA-FS-A4F5-06 1 22987402 22987402 G A C1QB Missense_Mutation p.M95I 0.20 tolerated(0.63) benign(0.001) TCGA-FS-A4F5-06 1 237880530 237880530 G A RYR2 Missense_Mutation p.M3452I 0.56 benign(0.157) TCGA-FS-A4F5-06 1 237994814 237994814 G A RYR2 Silent p.L4919L 0.27 TCGA-FS-A4F5-06 1 238048097 238048097 G A ZP4 Silent p.S454S 0.44 TCGA-FS-A4F5-06 1 242264024 242264024 A T PLD5 Missense_Mutation p.F434I 0.37 tolerated(0.08) benign(0.033) TCGA-FS-A4F5-06 1 242264025 242264025 G T PLD5 Silent p.T433T 0.38 TCGA-FS-A4F5-06 1 243354456 243354456 T A CEP170 Silent p.T324T 0.14 TCGA-FS-A4F5-06 1 24416597 24416597 C T MYOM3 Missense_Mutation p.D482N 0.30 deleterious(0.02) possibly_damaging(0.58) TCGA-FS-A4F5-06 1 248263017 248263017 C T OR2L13 Silent p.L114L 0.43 TCGA-FS-A4F5-06 1 248263646 248263646 C T OR2L13 3'UTR 0.33 TCGA-FS-A4F5-06 1 248344203 248344203 G A OR2M2 Missense_Mutation p.G306R 0.35 tolerated(0.28) benign(0.012) TCGA-FS-A4F5-06 1 2525366 2525366 G A MMEL1 Missense_Mutation p.P585L 0.32 deleterious(0.03) probably_damaging(1) TCGA-FS-A4F5-06 1 25718510 25718510 C T RHCE Silent p.T203T 0.76 TCGA-FS-A4F5-06 1 27106252 27106252 C T ARID1A Silent p.L1955L 0.63 TCGA-FS-A4F5-06 1 32101024 32101024 G A PEF1 Missense_Mutation p.P42S 0.35 tolerated(0.16) unknown(0) TCGA-FS-A4F5-06 1 34118052 34118052 C T CSMD2 Missense_Mutation p.G1446E 0.77 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 1 35852844 35852844 C A ZMYM4 Missense_Mutation p.L693I 0.70 tolerated(0.49) possibly_damaging(0.595) TCGA-FS-A4F5-06 1 40312904 40312904 G T TRIT1 Missense_Mutation p.R332S 0.53 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 1 41990568 41990568 C T HIVEP3 Missense_Mutation p.E1741K 0.20 probably_damaging(0.994) TCGA-FS-A4F5-06 1 43770786 43770786 G A TIE1 Missense_Mutation p.G108D 0.70 tolerated(0.1) possibly_damaging(0.759) TCGA-FS-A4F5-06 1 43895734 43895734 C T SZT2 Missense_Mutation p.P1397L 0.56 tolerated(0.1) probably_damaging(0.999) TCGA-FS-A4F5-06 1 45267295 45267295 C T PLK3 Missense_Mutation p.S146F 0.16 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 1 45267296 45267296 C T PLK3 Silent p.S146S 0.16 TCGA-FS-A4F5-06 1 47402395 47402395 G A CYP4A11 Missense_Mutation p.H151Y 0.23 deleterious(0) probably_damaging(0.989) TCGA-FS-A4F5-06 1 55509519 55509519 C T PCSK9 Missense_Mutation p.P71S 0.83 tolerated(0.12) benign(0) TCGA-FS-A4F5-06 1 6173030 6173030 G A CHD5 Silent p.I1647I 0.12 TCGA-FS-A4F5-06 1 64603126 64603126 C T ROR1 Missense_Mutation p.T186I 0.25 deleterious(0) probably_damaging(0.984) TCGA-FS-A4F5-06 1 67559156 67559156 G A C1orf141 Silent p.F245F 0.21 TCGA-FS-A4F5-06 1 68897194 68897194 G A RPE65 Silent p.I401I 0.74 TCGA-FS-A4F5-06 1 74701796 74701796 G A FPGT-TNNI3K Silent p.K131K 0.35 TCGA-FS-A4F5-06 1 75672358 75672358 G A SLC44A5 Silent p.F698F 0.64 TCGA-FS-A4F5-06 1 75684294 75684294 G A SLC44A5 Silent p.F470F 0.25 TCGA-FS-A4F5-06 1 76877879 76877879 C T ST6GALNAC3 Missense_Mutation p.P134S 0.66 probably_damaging(0.99) TCGA-FS-A4F5-06 1 7723467 7723467 C T CAMTA1 Missense_Mutation p.S287L 0.25 deleterious(0) probably_damaging(0.99) TCGA-FS-A4F5-06 1 77987620 77987620 G T AK5 Nonsense_Mutation p.G474* 0.43 TCGA-FS-A4F5-06 1 7887695 7887695 C T PER3 Silent p.P894P 0.75 TCGA-FS-A4F5-06 1 89579925 89579925 G A GBP2 Missense_Mutation p.P308L 0.25 deleterious(0.02) probably_damaging(0.981) TCGA-FS-A4F5-06 1 89889902 89889902 G A GBP1P1 RNA 0.22 TCGA-FS-A4F5-06 1 91850744 91850744 G A HFM1 Missense_Mutation p.P268S 0.15 deleterious(0.04) probably_damaging(0.916) TCGA-FS-A4F5-06 1 94643191 94643191 C T ARHGAP29 Missense_Mutation p.G961E 0.28 tolerated(1) benign(0.001) TCGA-FS-A4F5-06 1 9662213 9662213 C T TMEM201 Missense_Mutation p.S348L 0.67 tolerated(0.35) benign(0.342) TCGA-FS-A4F5-06 20 2321222 2321222 G A TGM3 Missense_Mutation p.E693K 0.38 tolerated_low_confidence(0.2) benign(0.037) TCGA-FS-A4F5-06 20 2444465 2444465 A G SNRPB Silent p.A116A 0.45 TCGA-FS-A4F5-06 20 29961011 29961011 G A DEFB118 3'UTR 0.73 TCGA-FS-A4F5-06 20 31374421 31374421 C T DNMT3B Silent p.F140F 0.44 TCGA-FS-A4F5-06 20 31656616 31656616 G A BPIFB3 Missense_Mutation p.G329E 0.27 tolerated(0.89) probably_damaging(0.965) TCGA-FS-A4F5-06 20 31760783 31760783 C T BPIFA2 Missense_Mutation p.S68F 0.18 deleterious(0.02) probably_damaging(0.977) TCGA-FS-A4F5-06 20 35766335 35766335 G A MROH8 Silent p.S536S 0.29 TCGA-FS-A4F5-06 20 37058369 37058369 A T SNORA71C RNA 0.46 TCGA-FS-A4F5-06 20 39992502 39992502 C T EMILIN3 Splice_Site p.X97_splice 0.63 TCGA-FS-A4F5-06 20 40033394 40033394 C T CHD6 Missense_Mutation p.D2663N 0.50 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-FS-A4F5-06 20 40126189 40126189 G A CHD6 Intron 0.44 TCGA-FS-A4F5-06 20 44681692 44681692 G A SLC12A5 Missense_Mutation p.S848N 0.66 tolerated(1) benign(0) TCGA-FS-A4F5-06 20 47835926 47835926 G A DDX27 Missense_Mutation p.E12K 0.20 tolerated_low_confidence(0.36) benign(0) TCGA-FS-A4F5-06 20 48741540 48741540 G A TMEM189 Intron 0.52 TCGA-FS-A4F5-06 20 50776748 50776748 G A ZFP64 Missense_Mutation p.S226L 0.46 deleterious(0.03) probably_damaging(0.996) TCGA-FS-A4F5-06 20 9520044 9520044 C T PAK7 3'UTR 0.40 TCGA-FS-A4F5-06 20 9561520 9561520 C T PAK7 Missense_Mutation p.D88N 0.46 tolerated(0.09) benign(0.101) TCGA-FS-A4F5-06 21 10951344 10951344 G A TPTE Missense_Mutation p.P123L 0.09 deleterious(0.04) benign(0.025) TCGA-FS-A4F5-06 21 11021181 11021181 C T BAGE2 RNA 0.12 TCGA-FS-A4F5-06 21 11026805 11026805 G A BAGE2 RNA 0.16 TCGA-FS-A4F5-06 21 30422476 30422476 C T USP16 Missense_Mutation p.P724S 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 21 34018860 34018860 G A SYNJ1 Silent p.L1069L 0.59 TCGA-FS-A4F5-06 21 36080333 36080333 G A CLIC6 Missense_Mutation p.E526K 0.37 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 21 41450653 41450653 C T DSCAM Missense_Mutation p.E1558K 0.50 tolerated(0.15) probably_damaging(0.932) TCGA-FS-A4F5-06 21 41539213 41539213 G A DSCAM Missense_Mutation p.P984S 0.61 deleterious(0.01) probably_damaging(0.918) TCGA-FS-A4F5-06 21 43161378 43161378 G A RIPK4 Missense_Mutation p.R659W 0.68 tolerated(0.18) probably_damaging(0.927) TCGA-FS-A4F5-06 21 43897468 43897468 C T RSPH1 Nonsense_Mutation p.W220* 0.35 TCGA-FS-A4F5-06 21 45076493 45076493 G A HSF2BP Silent p.F54F 0.13 TCGA-FS-A4F5-06 21 45929115 45929115 G A TSPEAR Missense_Mutation p.A574V 0.27 tolerated(0.44) benign(0.026) TCGA-FS-A4F5-06 21 46057511 46057511 C T KRTAP10-10 Silent p.P59P 0.64 TCGA-FS-A4F5-06 22 17119529 17119529 C T TPTEP1 RNA 0.62 TCGA-FS-A4F5-06 22 22040815 22040815 C T PPIL2 Missense_Mutation p.T253I 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 22 24621251 24621251 C T GGT5 Missense_Mutation p.G490R 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 22 24911227 24911227 G A UPB1 Missense_Mutation p.R227K 0.48 tolerated(1) benign(0.008) TCGA-FS-A4F5-06 22 26299688 26299688 G A MYO18B Missense_Mutation p.E1680K 0.35 tolerated(0.14) benign(0.022) TCGA-FS-A4F5-06 22 26351197 26351197 C T MYO18B Missense_Mutation p.S2008L 0.42 deleterious(0.02) benign(0.343) TCGA-FS-A4F5-06 22 26423512 26423512 C T MYO18B Silent p.I2524I 0.37 TCGA-FS-A4F5-06 22 26423596 26423596 G A MYO18B Silent p.R2552R 0.57 TCGA-FS-A4F5-06 22 29704336 29704336 C T GAS2L1 Missense_Mutation p.P81S 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4F5-06 22 29704337 29704337 C T GAS2L1 Missense_Mutation p.P81L 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 22 30659929 30659929 C T OSM Silent p.R234R 0.48 TCGA-FS-A4F5-06 22 31487802 31487802 C T SMTN Missense_Mutation p.P534L 0.32 deleterious(0.04) benign(0.027) TCGA-FS-A4F5-06 22 31656058 31656058 G T LIMK2 Silent p.V161V 0.34 TCGA-FS-A4F5-06 22 32793981 32793981 A C RTCB Missense_Mutation p.V254G 0.39 deleterious(0) probably_damaging(0.915) TCGA-FS-A4F5-06 22 35480375 35480375 G A ISX Splice_Site p.X128_splice 0.50 TCGA-FS-A4F5-06 22 36122381 36122381 C T APOL5 Missense_Mutation p.S89F 0.29 tolerated(0.2) benign(0.114) TCGA-FS-A4F5-06 22 37273838 37273838 C T NCF4 3'UTR 0.19 TCGA-FS-A4F5-06 22 38336918 38336918 C T MICALL1 3'UTR 0.62 TCGA-FS-A4F5-06 22 38336919 38336919 C T MICALL1 3'UTR 0.62 TCGA-FS-A4F5-06 22 39499708 39499708 G A APOBEC3H 3'UTR 0.32 TCGA-FS-A4F5-06 22 41318390 41318390 A G XPNPEP3 Missense_Mutation p.D370G 0.56 tolerated(0.29) benign(0.001) TCGA-FS-A4F5-06 22 42463799 42463799 G A NAGA Silent p.F98F 0.35 TCGA-FS-A4F5-06 22 43926706 43926706 C T EFCAB6 Missense_Mutation p.D1458N 0.46 deleterious(0.02) possibly_damaging(0.647) TCGA-FS-A4F5-06 22 44258218 44258218 G A SULT4A1 Silent p.F15F 0.55 TCGA-FS-A4F5-06 22 46657909 46657909 C T PKDREJ Silent p.K437K 0.42 TCGA-FS-A4F5-06 2 101587519 101587519 C T NPAS2 Missense_Mutation p.H375Y 0.29 tolerated(0.23) benign(0.248) TCGA-FS-A4F5-06 2 102805721 102805721 T A IL1RL2 Missense_Mutation p.F82I 0.31 tolerated(0.09) possibly_damaging(0.467) TCGA-FS-A4F5-06 2 10282434 10282434 C T C2orf48 Missense_Mutation p.P42L 0.64 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FS-A4F5-06 2 102955420 102955420 G A IL1RL1 Missense_Mutation p.R62K 0.42 tolerated(0.72) benign(0.05) TCGA-FS-A4F5-06 2 103121876 103121876 A T SLC9A4 Missense_Mutation p.N382Y 0.46 deleterious(0) possibly_damaging(0.879) TCGA-FS-A4F5-06 2 107040692 107040692 C T RGPD3 Missense_Mutation p.G1244E 0.20 deleterious(0.01) possibly_damaging(0.636) TCGA-FS-A4F5-06 2 108626906 108626906 C T SLC5A7 Silent p.F444F 0.48 TCGA-FS-A4F5-06 2 108868931 108868931 C T SULT1C3 Missense_Mutation p.P95S 0.43 deleterious(0.02) possibly_damaging(0.451) TCGA-FS-A4F5-06 2 109383173 109383173 T G RANBP2 Missense_Mutation p.L2060V 0.22 tolerated(0.36) probably_damaging(0.998) TCGA-FS-A4F5-06 2 110962581 110962581 C T NPHP1 5'UTR 0.16 TCGA-FS-A4F5-06 2 111789271 111789271 C T ACOXL Missense_Mutation p.S450F 0.47 deleterious(0) probably_damaging(0.983) TCGA-FS-A4F5-06 2 130900019 130900019 C T CCDC74B Intron 0.31 TCGA-FS-A4F5-06 2 132021632 132021632 G A POTEE Silent p.G868G 0.16 TCGA-FS-A4F5-06 2 135848596 135848596 A G RAB3GAP1 Missense_Mutation p.E60G 0.52 deleterious(0.02) possibly_damaging(0.58) TCGA-FS-A4F5-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.42 tolerated(0.66) probably_damaging(0.964) TCGA-FS-A4F5-06 2 138330043 138330043 C T THSD7B Missense_Mutation p.P1117S 0.46 deleterious(0) unknown(0) TCGA-FS-A4F5-06 2 1440092 1440092 C T TPO Missense_Mutation p.P140S 0.75 deleterious(0.04) possibly_damaging(0.52) TCGA-FS-A4F5-06 2 1457568 1457568 C T TPO Silent p.F195F 0.57 TCGA-FS-A4F5-06 2 149806890 149806890 G A KIF5C Silent p.G294G 0.51 TCGA-FS-A4F5-06 2 152426748 152426748 C T NEB Silent p.Q5759Q 0.18 TCGA-FS-A4F5-06 2 158182212 158182212 C T ERMN Intron 0.39 TCGA-FS-A4F5-06 2 160825821 160825821 C T PLA2R1 Missense_Mutation p.E904K 0.41 tolerated(0.24) benign(0.12) TCGA-FS-A4F5-06 2 163075597 163075597 C T FAP Missense_Mutation p.G195R 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 2 163374667 163374667 C T KCNH7 Silent p.R155R 0.41 TCGA-FS-A4F5-06 2 166165233 166165233 C T SCN2A Silent p.G178G 0.50 TCGA-FS-A4F5-06 2 166166906 166166906 C T SCN2A Silent p.F257F 0.51 TCGA-FS-A4F5-06 2 168107021 168107021 G A XIRP2 Missense_Mutation p.G3040E 0.46 benign(0.082) TCGA-FS-A4F5-06 2 170857905 170857905 C T UBR3 Missense_Mutation p.S1337F 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A4F5-06 2 171055880 171055880 G A MYO3B Silent p.V55V 0.39 TCGA-FS-A4F5-06 2 179393863 179393863 C T TTN Missense_Mutation p.E35539K 0.18 TCGA-FS-A4F5-06 2 179426007 179426007 G A TTN Silent p.I28284I 0.44 TCGA-FS-A4F5-06 2 179440956 179440956 G A TTN Silent p.F23301F 0.41 TCGA-FS-A4F5-06 2 179495665 179495665 C T TTN Missense_Mutation p.E14674K 0.30 TCGA-FS-A4F5-06 2 179516831 179516831 G A TTN Missense_Mutation p.P13096L 0.21 TCGA-FS-A4F5-06 2 179584982 179584982 C T TTN Missense_Mutation p.R7796Q 0.41 TCGA-FS-A4F5-06 2 179596941 179596941 C T TTN Silent p.K5585K 0.46 TCGA-FS-A4F5-06 2 179598590 179598590 C T TTN Missense_Mutation p.D5176N 0.40 TCGA-FS-A4F5-06 2 179604077 179604077 G A TTN Missense_Mutation p.S4628F 0.49 TCGA-FS-A4F5-06 2 179611175 179611175 C T TTN Intron 0.34 TCGA-FS-A4F5-06 2 179615354 179615354 C T TTN Intron 0.51 TCGA-FS-A4F5-06 2 179615812 179615812 T A TTN Intron 0.59 TCGA-FS-A4F5-06 2 179650650 179650650 C T TTN Silent p.K765K 0.54 TCGA-FS-A4F5-06 2 179654825 179654825 C T TTN Silent p.R606R 0.37 TCGA-FS-A4F5-06 2 179701873 179701873 G A CCDC141 Missense_Mutation p.T1358I 0.55 deleterious(0.04) benign(0.351) TCGA-FS-A4F5-06 2 182359477 182359477 C T ITGA4 Missense_Mutation p.S426L 0.44 tolerated(0.16) possibly_damaging(0.449) TCGA-FS-A4F5-06 2 182542525 182542525 G A NEUROD1 Missense_Mutation p.H355Y 0.17 deleterious(0) probably_damaging(0.942) TCGA-FS-A4F5-06 2 183095762 183095762 C T PDE1A Missense_Mutation p.D188N 0.49 tolerated(0.25) probably_damaging(0.944) TCGA-FS-A4F5-06 2 183951905 183951905 A G DUSP19 Silent p.E137E 0.14 TCGA-FS-A4F5-06 2 188361636 188361636 C T TFPI Silent p.L97L 0.35 TCGA-FS-A4F5-06 2 189873782 189873782 T A COL3A1 Missense_Mutation p.Y1220N 0.39 unknown(0) TCGA-FS-A4F5-06 2 190332266 190332266 C T WDR75 Missense_Mutation p.S507F 0.42 deleterious(0.02) benign(0.082) TCGA-FS-A4F5-06 2 1926121 1926121 G A MYT1L Missense_Mutation p.P474S 0.57 tolerated(0.7) benign(0.004) TCGA-FS-A4F5-06 2 198257053 198257053 G A SF3B1 Missense_Mutation p.R1297C 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 2 198950720 198950720 C T PLCL1 Missense_Mutation p.P827S 0.47 deleterious(0.03) possibly_damaging(0.691) TCGA-FS-A4F5-06 2 201507384 201507384 C T AOX1 Missense_Mutation p.L903F 0.57 tolerated(0.3) benign(0.35) TCGA-FS-A4F5-06 2 204599678 204599678 C T CD28 3'UTR 0.48 TCGA-FS-A4F5-06 2 207173257 207173257 C T ZDBF2 Silent p.I1335I 0.47 TCGA-FS-A4F5-06 2 216298055 216298055 G A FN1 Missense_Mutation p.T136I 0.41 deleterious(0) possibly_damaging(0.816) TCGA-FS-A4F5-06 2 219232510 219232510 C T C2orf62 Silent p.S329S 0.41 TCGA-FS-A4F5-06 2 220500082 220500082 C T SLC4A3 Silent p.P639P 0.24 TCGA-FS-A4F5-06 2 224822160 224822160 G A MRPL44 5'UTR 0.33 TCGA-FS-A4F5-06 2 227896959 227896959 C T COL4A4 Missense_Mutation p.G1204E 0.40 unknown(0) TCGA-FS-A4F5-06 2 229046323 229046323 G A SPHKAP 5'UTR 0.37 TCGA-FS-A4F5-06 2 230456412 230456412 G A DNER Missense_Mutation p.P157S 0.52 tolerated(0.25) benign(0.004) TCGA-FS-A4F5-06 2 232010990 232010990 C T PSMD1 Missense_Mutation p.P679S 0.36 tolerated(0.33) benign(0.145) TCGA-FS-A4F5-06 2 232319893 232319893 G A NCL 3'UTR 0.35 TCGA-FS-A4F5-06 2 234601756 234601756 G A UGT1A6 Missense_Mutation p.G36R 0.52 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 2 237150126 237150126 T C ASB18 Intron 0.38 TCGA-FS-A4F5-06 2 26536765 26536765 G T GPR113 Missense_Mutation p.S380Y 0.71 tolerated(0.81) benign(0.102) TCGA-FS-A4F5-06 2 28004449 28004449 T C RBKS 3'UTR 0.66 TCGA-FS-A4F5-06 2 28762045 28762045 G A PLB1 Missense_Mutation p.S233N 0.58 tolerated(0.35) benign(0.052) TCGA-FS-A4F5-06 2 28828809 28828809 C T PLB1 Silent p.T1017T 0.24 TCGA-FS-A4F5-06 2 31457548 31457548 G A EHD3 Missense_Mutation p.V21M 0.38 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F5-06 2 32475374 32475374 C T NLRC4 Missense_Mutation p.G520E 0.62 tolerated(0.15) benign(0.067) TCGA-FS-A4F5-06 2 40342430 40342430 G A SLC8A1 Missense_Mutation p.S962F 0.60 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F5-06 2 56098217 56098217 C T EFEMP1 Missense_Mutation p.E348K 0.25 deleterious(0.01) possibly_damaging(0.787) TCGA-FS-A4F5-06 2 65316200 65316200 G A RAB1A Missense_Mutation p.S98F 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 2 72719533 72719533 G A EXOC6B Missense_Mutation p.R527W 0.61 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 2 79313546 79313546 C T REG1B Missense_Mutation p.E90K 0.68 tolerated(0.26) benign(0.393) TCGA-FS-A4F5-06 2 90192975 90192975 C T IGKV1D-13 Silent p.L10L 0.23 TCGA-FS-A4F5-06 2 90229425 90229425 C T IGKV1D-42 Missense_Mutation p.S82L 0.61 deleterious(0.03) benign(0.022) TCGA-FS-A4F5-06 2 95947008 95947008 C T PROM2 Silent p.F482F 0.54 TCGA-FS-A4F5-06 3 100569567 100569567 G A ABI3BP Missense_Mutation p.R413C 0.40 deleterious(0.04) benign(0.021) TCGA-FS-A4F5-06 3 100645221 100645221 C T ABI3BP Missense_Mutation p.G69R 0.25 deleterious(0) probably_damaging(0.953) TCGA-FS-A4F5-06 3 10136044 10136044 C T FANCD2 Silent p.H1320H 0.56 TCGA-FS-A4F5-06 3 108073996 108073996 G A HHLA2 Silent p.R151R 0.25 TCGA-FS-A4F5-06 3 108270127 108270127 G A KIAA1524 Missense_Mutation p.R863C 0.24 tolerated(0.09) benign(0) TCGA-FS-A4F5-06 3 108405367 108405367 C T DZIP3 Missense_Mutation p.P1029S 0.59 tolerated(0.22) benign(0.002) TCGA-FS-A4F5-06 3 108475975 108475975 G A RETNLB Missense_Mutation p.P20S 0.29 tolerated(0.23) benign(0.026) TCGA-FS-A4F5-06 3 115395159 115395159 G A GAP43 Silent p.E146E 0.15 TCGA-FS-A4F5-06 3 121518183 121518183 G A IQCB1 Missense_Mutation p.S209L 0.54 deleterious(0.04) benign(0.011) TCGA-FS-A4F5-06 3 121822572 121822572 G A CD86 Nonsense_Mutation p.W93* 0.35 TCGA-FS-A4F5-06 3 122340368 122340368 G A PARP15 Missense_Mutation p.G381R 0.20 tolerated(0.39) benign(0.002) TCGA-FS-A4F5-06 3 122631770 122631770 T C SEMA5B Missense_Mutation p.N936S 0.16 tolerated(0.31) benign(0.03) TCGA-FS-A4F5-06 3 124436232 124436232 G A KALRN Silent p.K1108K 0.13 TCGA-FS-A4F5-06 3 124515335 124515335 G A ITGB5 Silent p.N531N 0.57 TCGA-FS-A4F5-06 3 12623639 12623639 G A MKRN2 Missense_Mutation p.D380N 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 3 127642822 127642822 G A KBTBD12 Silent p.R306R 0.28 TCGA-FS-A4F5-06 3 128181722 128181722 G A DNAJB8 Missense_Mutation p.R123C 0.74 tolerated(0.17) benign(0.003) TCGA-FS-A4F5-06 3 131624167 131624167 G A CPNE4 Missense_Mutation p.L41F 0.43 tolerated(0.95) probably_damaging(0.998) TCGA-FS-A4F5-06 3 132295785 132295785 C T ACAD11 Intron 0.31 TCGA-FS-A4F5-06 3 133473407 133473407 C T TF Nonsense_Mutation p.R132* 0.28 TCGA-FS-A4F5-06 3 133475789 133475789 C T TF Missense_Mutation p.T269I 0.21 deleterious(0.01) benign(0.015) TCGA-FS-A4F5-06 3 139069088 139069088 G A MRPS22 Missense_Mutation p.R191Q 0.25 tolerated(0.07) benign(0.28) TCGA-FS-A4F5-06 3 140406746 140406746 G A TRIM42 Missense_Mutation p.E408K 0.22 deleterious(0.05) possibly_damaging(0.905) TCGA-FS-A4F5-06 3 142511672 142511672 G A TRPC1 Missense_Mutation p.D482N 0.63 tolerated(0.5) benign(0.002) TCGA-FS-A4F5-06 3 150377862 150377862 G A FAM194A Silent p.I603I 0.54 TCGA-FS-A4F5-06 3 151474795 151474795 G A AADACL2 Missense_Mutation p.E207K 0.61 tolerated(0.11) benign(0.053) TCGA-FS-A4F5-06 3 155212010 155212010 C T PLCH1 Missense_Mutation p.R689Q 0.34 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 3 155267673 155267673 C T PLCH1 Missense_Mutation p.G410E 0.17 tolerated(1) benign(0.006) TCGA-FS-A4F5-06 3 169940535 169940535 C T PRKCI Silent p.V26V 0.35 TCGA-FS-A4F5-06 3 171379852 171379852 C T PLD1 Missense_Mutation p.E780K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 3 185161232 185161232 G C MAP3K13 Splice_Site p.X220_splice 0.15 TCGA-FS-A4F5-06 3 185161233 185161233 G T MAP3K13 Missense_Mutation p.K220N 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-FS-A4F5-06 3 194062807 194062807 G A CPN2 Missense_Mutation p.P209S 0.24 tolerated(0.11) possibly_damaging(0.88) TCGA-FS-A4F5-06 3 195491986 195491986 C T MUC4 Nonsense_Mutation p.W4602* 0.50 TCGA-FS-A4F5-06 3 21706454 21706454 G A ZNF385D Missense_Mutation p.S30L 0.26 deleterious(0.04) benign(0.114) TCGA-FS-A4F5-06 3 31661282 31661282 T C STT3B Silent p.L429L 0.20 TCGA-FS-A4F5-06 3 33135663 33135663 G A TMPPE Silent p.L9L 0.60 TCGA-FS-A4F5-06 3 38753883 38753883 G A SCN10A Silent p.L1286L 0.54 TCGA-FS-A4F5-06 3 3886440 3886440 G A LRRN1 Missense_Mutation p.E39K 0.60 deleterious(0) possibly_damaging(0.613) TCGA-FS-A4F5-06 3 38950520 38950520 C T SCN11A Missense_Mutation p.E423K 0.33 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A4F5-06 3 44488909 44488909 G A ZNF445 Missense_Mutation p.P752S 0.33 tolerated(0.48) unknown(0) TCGA-FS-A4F5-06 3 4732873 4732873 C T ITPR1 Nonsense_Mutation p.Q1277* 0.74 TCGA-FS-A4F5-06 3 48501288 48501289 CC - ATRIP Frame_Shift_Del p.L345Afs*22 0.32 TCGA-FS-A4F5-06 3 48613143 48613143 C T COL7A1 Silent p.E1965E 0.36 TCGA-FS-A4F5-06 3 49114342 49114342 T A QRICH1 Nonsense_Mutation p.K37* 0.29 TCGA-FS-A4F5-06 3 49323590 49323590 G A USP4 Missense_Mutation p.S714F 0.27 deleterious(0.01) benign(0.03) TCGA-FS-A4F5-06 3 50334688 50334688 G A NAT6 Silent p.P91P 0.67 TCGA-FS-A4F5-06 3 51266974 51266974 C T DOCK3 Silent p.A617A 0.17 TCGA-FS-A4F5-06 3 52555399 52555399 C T STAB1 Silent p.S1977S 0.50 TCGA-FS-A4F5-06 3 53126614 53126614 G A RFT1 Missense_Mutation p.A410V 0.40 tolerated(0.94) benign(0.011) TCGA-FS-A4F5-06 3 56779338 56779338 G A ARHGEF3 Silent p.F287F 0.60 TCGA-FS-A4F5-06 3 64138933 64138933 C T PRICKLE2 Missense_Mutation p.E238K 0.56 deleterious(0) benign(0.158) TCGA-FS-A4F5-06 3 7494314 7494314 G A GRM7 Missense_Mutation p.D399N 0.67 tolerated(0.06) probably_damaging(0.938) TCGA-FS-A4F5-06 3 8940727 8940727 C T RAD18 Silent p.Q391Q 0.57 TCGA-FS-A4F5-06 3 89480404 89480404 C T EPHA3 Silent p.L747L 0.50 TCGA-FS-A4F5-06 3 93646166 93646166 A G PROS1 Silent p.L54L 0.35 TCGA-FS-A4F5-06 3 96706317 96706317 G A EPHA6 Missense_Mutation p.M198I 0.42 tolerated(0.47) benign(0.074) TCGA-FS-A4F5-06 3 97984035 97984035 C T OR5H6 Missense_Mutation p.P303S 0.50 deleterious(0.01) possibly_damaging(0.458) TCGA-FS-A4F5-06 3 98072733 98072733 C T OR5K4 Silent p.F12F 0.25 TCGA-FS-A4F5-06 3 99509726 99509726 G A COL8A1 Missense_Mutation p.G67D 0.21 deleterious_low_confidence(0) unknown(0) TCGA-FS-A4F5-06 4 110624588 110624588 C T CASP6 5'UTR 0.48 TCGA-FS-A4F5-06 4 110682704 110682704 G A CFI Silent p.F209F 0.36 TCGA-FS-A4F5-06 4 111436534 111436534 G A ENPEP Missense_Mutation p.G482E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 4 115544060 115544060 C T UGT8 Silent p.F8F 0.53 TCGA-FS-A4F5-06 4 119234470 119234470 C T PRSS12 Missense_Mutation p.E459K 0.43 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F5-06 4 126319984 126319984 C T FAT4 Missense_Mutation p.P1741S 0.49 possibly_damaging(0.698) TCGA-FS-A4F5-06 4 126372221 126372221 G A FAT4 Silent p.K3350K 0.54 TCGA-FS-A4F5-06 4 1343462 1343462 C T UVSSA Silent p.F83F 0.40 TCGA-FS-A4F5-06 4 144381609 144381609 C A GAB1 Missense_Mutation p.P621H 0.46 deleterious(0) possibly_damaging(0.754) TCGA-FS-A4F5-06 4 146823838 146823838 C T ZNF827 Nonsense_Mutation p.W191* 0.20 TCGA-FS-A4F5-06 4 148407109 148407109 C T EDNRA Silent p.I92I 0.32 TCGA-FS-A4F5-06 4 151770083 151770083 C T LRBA Missense_Mutation p.R1409K 0.46 deleterious(0.04) probably_damaging(0.977) TCGA-FS-A4F5-06 4 15443999 15443999 C T C1QTNF7 Missense_Mutation p.A156V 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 4 154625664 154625664 C T TLR2 Silent p.F535F 0.36 TCGA-FS-A4F5-06 4 164247268 164247268 C A NPY1R Missense_Mutation p.G147W 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 4 164271441 164271441 G A NPY5R Missense_Mutation p.D6N 0.39 tolerated(0.17) benign(0.009) TCGA-FS-A4F5-06 4 167020663 167020663 G A TLL1 Missense_Mutation p.R964Q 0.41 deleterious(0.05) probably_damaging(0.99) TCGA-FS-A4F5-06 4 169837077 169837077 G A PALLD Missense_Mutation p.E917K 0.32 deleterious(0.01) probably_damaging(0.941) TCGA-FS-A4F5-06 4 17517087 17517087 C T CLRN2 Silent p.F66F 0.52 TCGA-FS-A4F5-06 4 175896957 175896957 C A ADAM29 Missense_Mutation p.P94Q 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 4 175898903 175898903 C T ADAM29 Missense_Mutation p.P743S 0.41 tolerated(0.38) possibly_damaging(0.641) TCGA-FS-A4F5-06 4 177608368 177608368 C T VEGFC Missense_Mutation p.G373E 0.38 deleterious(0) possibly_damaging(0.864) TCGA-FS-A4F5-06 4 1817424 1817424 C T LETM1 Silent p.K679K 0.10 TCGA-FS-A4F5-06 4 187510313 187510313 G A FAT1 Silent p.F4400F 0.49 TCGA-FS-A4F5-06 4 187524477 187524477 G A FAT1 Nonsense_Mutation p.Q3735* 0.42 TCGA-FS-A4F5-06 4 187524478 187524478 G A FAT1 Silent p.F3734F 0.41 TCGA-FS-A4F5-06 4 20544117 20544117 G A SLIT2 Missense_Mutation p.G715E 0.47 tolerated(0.09) probably_damaging(1) TCGA-FS-A4F5-06 4 22820480 22820480 C A GBA3 Silent p.V448V 0.72 TCGA-FS-A4F5-06 4 265490 265490 C T ZNF732 Missense_Mutation p.G386R 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A4F5-06 4 2943383 2943383 G A NOP14 Missense_Mutation p.H709Y 0.23 tolerated(0.29) benign(0.014) TCGA-FS-A4F5-06 4 2943384 2943384 G A NOP14 Silent p.F708F 0.23 TCGA-FS-A4F5-06 4 3127320 3127320 G A HTT Missense_Mutation p.E456K 0.63 benign(0.297) TCGA-FS-A4F5-06 4 3948534 3948534 G A FAM86EP Intron 0.41 TCGA-FS-A4F5-06 4 39865006 39865006 G A PDS5A Missense_Mutation p.H906Y 0.26 tolerated(0.21) probably_damaging(0.915) TCGA-FS-A4F5-06 4 69693184 69693184 G A UGT2B10 Missense_Mutation p.G409R 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 4 70066197 70066197 C T UGT2B11 Nonsense_Mutation p.W517* 0.39 TCGA-FS-A4F5-06 4 70146232 70146232 G A UGT2B28 Nonsense_Mutation p.W5* 0.41 TCGA-FS-A4F5-06 4 70465074 70465074 C T UGT2A1 Missense_Mutation p.E462K 0.31 deleterious(0.01) possibly_damaging(0.876) TCGA-FS-A4F5-06 4 70505031 70505031 G A UGT2A2 Missense_Mutation p.P110S 0.54 tolerated(0.6) probably_damaging(0.98) TCGA-FS-A4F5-06 4 71510647 71510647 C T ENAM 3'UTR 0.62 TCGA-FS-A4F5-06 4 77288693 77288693 C T CCDC158 Silent p.L528L 0.42 TCGA-FS-A4F5-06 4 77324405 77324405 G A CCDC158 5'UTR 0.42 TCGA-FS-A4F5-06 4 80329277 80329277 C T GK2 Silent p.L26L 0.35 TCGA-FS-A4F5-06 4 84502744 84502744 G A AGPAT9 Missense_Mutation p.E80K 0.40 tolerated(0.17) possibly_damaging(0.824) TCGA-FS-A4F5-06 4 87693930 87693930 G A PTPN13 Splice_Site p.X1728_splice 0.20 TCGA-FS-A4F5-06 4 88732565 88732565 G A IBSP Missense_Mutation p.E153K 0.62 deleterious(0.04) possibly_damaging(0.741) TCGA-FS-A4F5-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.56 TCGA-FS-A4F5-06 4 9892241 9892241 G A SLC2A9 Missense_Mutation p.T403I 0.31 tolerated(0.34) benign(0.049) TCGA-FS-A4F5-06 5 101834450 101834450 C T SLCO6A1 Silent p.R33R 0.42 TCGA-FS-A4F5-06 5 1033491 1033491 A C NKD2 Silent p.A69A 0.25 TCGA-FS-A4F5-06 5 1064252 1064252 G A SLC12A7 Silent p.I851I 0.40 TCGA-FS-A4F5-06 5 11732302 11732302 C T CTNND2 Silent p.G40G 0.46 TCGA-FS-A4F5-06 5 11732333 11732333 G A CTNND2 Missense_Mutation p.S30F 0.48 tolerated(0.08) benign(0.174) TCGA-FS-A4F5-06 5 121767700 121767700 G A SNCAIP Missense_Mutation p.E407K 0.25 deleterious(0.02) possibly_damaging(0.658) TCGA-FS-A4F5-06 5 125939354 125939354 G T PHAX Silent p.V63V 0.35 TCGA-FS-A4F5-06 5 13793757 13793757 G A DNAH5 Silent p.I2697I 0.23 TCGA-FS-A4F5-06 5 13839596 13839596 C T DNAH5 Silent p.L1917L 0.35 TCGA-FS-A4F5-06 5 13901535 13901535 C T DNAH5 Silent p.K626K 0.43 TCGA-FS-A4F5-06 5 140255646 140255646 C T PCDHA12 Missense_Mutation p.R197W 1.00 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-FS-A4F5-06 5 140482487 140482487 G A PCDHB3 Missense_Mutation p.E752K 0.79 deleterious_low_confidence(0.02) benign(0.368) TCGA-FS-A4F5-06 5 140531334 140531334 C T PCDHB6 Missense_Mutation p.S499F 0.87 tolerated(0.13) benign(0.006) TCGA-FS-A4F5-06 5 140558444 140558444 G A PCDHB8 Missense_Mutation p.E277K 0.90 tolerated_low_confidence(0.27) benign(0.004) TCGA-FS-A4F5-06 5 140710992 140710992 C T PCDHGA1 Silent p.Y247Y 0.84 TCGA-FS-A4F5-06 5 140762958 140762958 G A PCDHGA7 Silent p.T164T 0.85 TCGA-FS-A4F5-06 5 147889180 147889180 G A HTR4 Silent p.S305S 1.00 TCGA-FS-A4F5-06 5 149772279 149772279 C T TCOF1 Missense_Mutation p.P1176S 0.76 deleterious(0.05) possibly_damaging(0.55) TCGA-FS-A4F5-06 5 156590578 156590578 C T FAM71B Missense_Mutation p.G233E 0.76 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 5 157181871 157181871 C T LSM11 Missense_Mutation p.R228W 0.80 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F5-06 5 159776435 159776435 C T C1QTNF2 Missense_Mutation p.D245N 0.78 tolerated(0.08) probably_damaging(0.991) TCGA-FS-A4F5-06 5 161580234 161580234 G A GABRG2 Missense_Mutation p.E470K 0.80 tolerated(0.21) benign(0.175) TCGA-FS-A4F5-06 5 171544499 171544499 C T STK10 Missense_Mutation p.G169E 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 5 19838948 19838948 G A CDH18 Missense_Mutation p.R50C 0.53 deleterious(0) probably_damaging(0.985) TCGA-FS-A4F5-06 5 31294300 31294300 G A CDH6 Missense_Mutation p.D154N 0.48 deleterious(0) probably_damaging(0.986) TCGA-FS-A4F5-06 5 31313488 31313488 G A CDH6 Silent p.S439S 0.40 TCGA-FS-A4F5-06 5 35065949 35065949 G A PRLR Missense_Mutation p.P371S 0.54 tolerated(0.08) benign(0.062) TCGA-FS-A4F5-06 5 35670372 35670372 C T SPEF2 Intron 0.61 TCGA-FS-A4F5-06 5 35957378 35957378 C T UGT3A1 Nonsense_Mutation p.W329* 0.53 TCGA-FS-A4F5-06 5 35991268 35991268 G A UGT3A1 Silent p.I25I 0.17 TCGA-FS-A4F5-06 5 38950723 38950723 G A RICTOR Missense_Mutation p.S1076F 0.35 tolerated(0.08) benign(0.144) TCGA-FS-A4F5-06 5 40852457 40852457 G A CARD6 Silent p.R341R 0.26 TCGA-FS-A4F5-06 5 41012742 41012742 G A MROH2B Silent p.A1026A 0.37 TCGA-FS-A4F5-06 5 41203247 41203247 C T C6 Nonsense_Mutation p.W29* 0.44 TCGA-FS-A4F5-06 5 45262296 45262296 C T HCN1 Silent p.L800L 0.23 TCGA-FS-A4F5-06 5 49695062 49695062 G A EMB 3'UTR 0.39 TCGA-FS-A4F5-06 5 52344306 52344306 G A ITGA2 Silent p.Q167Q 0.51 TCGA-FS-A4F5-06 5 5242240 5242240 C T ADAMTS16 Silent p.P866P 0.48 TCGA-FS-A4F5-06 5 5242241 5242241 C T ADAMTS16 Missense_Mutation p.P867S 0.47 tolerated(0.92) benign(0.002) TCGA-FS-A4F5-06 5 54405998 54405998 G C GZMA Missense_Mutation p.K259N 0.24 tolerated(0.12) benign(0.213) TCGA-FS-A4F5-06 5 60188383 60188383 C T ERCC8 Intron 0.58 TCGA-FS-A4F5-06 5 63496695 63496695 C T RNF180 Missense_Mutation p.R21C 0.44 tolerated(0.11) benign(0.194) TCGA-FS-A4F5-06 5 68902987 68902987 C T RP11-848G14.2 RNA 0.18 TCGA-FS-A4F5-06 5 76248907 76248907 G A CRHBP 5'UTR 0.36 TCGA-FS-A4F5-06 5 79617301 79617301 A T SPZ1 Missense_Mutation p.M423L 0.38 deleterious(0.01) benign(0.013) TCGA-FS-A4F5-06 5 80382693 80382693 G A RASGRF2 Silent p.R437R 0.49 TCGA-FS-A4F5-06 5 80419517 80419517 G A RASGRF2 Missense_Mutation p.D843N 0.56 tolerated_low_confidence(0.14) possibly_damaging(0.58) TCGA-FS-A4F5-06 5 82876184 82876184 G A VCAN Silent p.K3374K 0.45 TCGA-FS-A4F5-06 5 82969277 82969277 A C HAPLN1 Nonsense_Mutation p.Y22* 0.46 TCGA-FS-A4F5-06 5 89990063 89990063 C T GPR98 Missense_Mutation p.A2497V 0.38 probably_damaging(0.935) TCGA-FS-A4F5-06 5 94756058 94756058 A G FAM81B Missense_Mutation p.N203S 0.54 tolerated(0.22) benign(0.056) TCGA-FS-A4F5-06 6 102069922 102069922 C T GRIK2 Missense_Mutation p.P72S 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-FS-A4F5-06 6 105607652 105607652 G A POPDC3 Silent p.F176F 0.37 TCGA-FS-A4F5-06 6 108067960 108067960 G A SCML4 Silent p.D140D 0.40 TCGA-FS-A4F5-06 6 117632270 117632270 G A ROS1 Missense_Mutation p.P2049L 0.47 deleterious(0.01) benign(0.14) TCGA-FS-A4F5-06 6 123332192 123332192 C T CLVS2 Missense_Mutation p.P151L 0.39 tolerated(0.35) benign(0.042) TCGA-FS-A4F5-06 6 125284017 125284017 G A RP11-510H23.1 RNA 0.20 TCGA-FS-A4F5-06 6 129774250 129774250 C T LAMA2 Missense_Mutation p.L2183F 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 6 132910384 132910384 C T TAAR5 Missense_Mutation p.V148M 0.52 tolerated(0.07) possibly_damaging(0.526) TCGA-FS-A4F5-06 6 135513668 135513668 C T MYB Missense_Mutation p.S245F 0.24 tolerated(0.08) possibly_damaging(0.753) TCGA-FS-A4F5-06 6 137019667 137019667 G A MAP3K5 Missense_Mutation p.R256C 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4F5-06 6 138583857 138583857 G A KIAA1244 Missense_Mutation p.E413K 0.31 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 6 143089673 143089673 T A HIVEP2 Missense_Mutation p.M1730L 0.42 tolerated(0.79) benign(0.013) TCGA-FS-A4F5-06 6 144508265 144508265 C T STX11 Silent p.I167I 0.27 TCGA-FS-A4F5-06 6 144835114 144835114 G A UTRN Missense_Mutation p.E1672K 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 6 152469313 152469313 G A SYNE1 Silent p.I8281I 0.32 TCGA-FS-A4F5-06 6 152748803 152748803 C T SYNE1 Intron 0.49 TCGA-FS-A4F5-06 6 158565372 158565372 G A SERAC1 Missense_Mutation p.R190C 0.23 deleterious(0) probably_damaging(0.994) TCGA-FS-A4F5-06 6 160664772 160664772 G A SLC22A2 Missense_Mutation p.L371F 0.37 deleterious(0.01) possibly_damaging(0.77) TCGA-FS-A4F5-06 6 16143273 16143273 T C MYLIP Silent p.L163L 0.16 TCGA-FS-A4F5-06 6 17637499 17637499 G A NUP153 Silent p.T783T 0.13 TCGA-FS-A4F5-06 6 28501787 28501787 C T GPX5 Missense_Mutation p.S170F 0.14 tolerated(1) benign(0.001) TCGA-FS-A4F5-06 6 28542497 28542497 C T SCAND3 Missense_Mutation p.R662K 0.20 deleterious_low_confidence(0.03) benign(0.025) TCGA-FS-A4F5-06 6 30137031 30137031 A G TRIM15 Missense_Mutation p.N241S 0.35 tolerated(0.15) benign(0.004) TCGA-FS-A4F5-06 6 30529767 30529767 C T PRR3 Missense_Mutation p.P109L 0.76 tolerated_low_confidence(0.08) possibly_damaging(0.879) TCGA-FS-A4F5-06 6 30856766 30856766 C T DDR1 Missense_Mutation p.S56F 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A4F5-06 6 30954281 30954281 C T MUC21 Missense_Mutation p.S110F 0.24 tolerated(0.09) unknown(0) TCGA-FS-A4F5-06 6 30955199 30955199 G A MUC21 Missense_Mutation p.G416E 0.12 tolerated(0.11) unknown(0) TCGA-FS-A4F5-06 6 32017239 32017240 GG A TNXB 5'Flank 0.12 TCGA-FS-A4F5-06 6 32411162 32411162 C T HLA-DRA Missense_Mutation p.P177S 0.69 deleterious(0.05) benign(0.037) TCGA-FS-A4F5-06 6 33134304 33134304 G A COL11A2 Missense_Mutation p.P1374S 0.78 unknown(0) TCGA-FS-A4F5-06 6 33374033 33374033 G A KIFC1 Missense_Mutation p.E533K 0.19 tolerated(0.08) benign(0.17) TCGA-FS-A4F5-06 6 35911657 35911657 C T SLC26A8 3'UTR 0.19 TCGA-FS-A4F5-06 6 36287351 36287351 C T C6orf222 Missense_Mutation p.E569K 0.13 tolerated(0.68) benign(0.001) TCGA-FS-A4F5-06 6 36653556 36653556 C T CDKN1A Silent p.I158I 0.51 TCGA-FS-A4F5-06 6 36730754 36730754 C T CPNE5 Silent p.G265G 0.10 TCGA-FS-A4F5-06 6 37622085 37622085 T C MDGA1 Missense_Mutation p.N316S 0.27 tolerated(0.08) probably_damaging(0.923) TCGA-FS-A4F5-06 6 38690731 38690731 C T DNAH8 5'Flank 0.18 TCGA-FS-A4F5-06 6 39162078 39162078 G A KCNK5 Silent p.I167I 0.21 TCGA-FS-A4F5-06 6 42227424 42227424 G A TRERF1 Missense_Mutation p.A641V 0.51 tolerated(0.22) possibly_damaging(0.483) TCGA-FS-A4F5-06 6 42689706 42689706 G A PRPH2 Missense_Mutation p.R123W 0.63 deleterious(0.02) benign(0.031) TCGA-FS-A4F5-06 6 43307400 43307400 G A ZNF318 Missense_Mutation p.P1446S 0.59 probably_damaging(0.999) TCGA-FS-A4F5-06 6 47686167 47686167 C T GPR115 Missense_Mutation p.R693C 0.50 deleterious_low_confidence(0.04) possibly_damaging(0.802) TCGA-FS-A4F5-06 6 48036238 48036238 G A PTCHD4 Silent p.L52L 0.25 TCGA-FS-A4F5-06 6 54025387 54025387 C T MLIP Missense_Mutation p.S275F 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 6 54806472 54806472 G A FAM83B Silent p.E901E 0.44 TCGA-FS-A4F5-06 6 55638936 55638936 C T BMP5 Missense_Mutation p.R313Q 0.49 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F5-06 6 62611258 62611258 G A KHDRBS2 Missense_Mutation p.R168C 0.36 tolerated(0.18) benign(0.139) TCGA-FS-A4F5-06 6 66204834 66204834 G A EYS Missense_Mutation p.S157L 0.46 tolerated_low_confidence(0.34) probably_damaging(0.943) TCGA-FS-A4F5-06 6 69653823 69653823 G A BAI3 Missense_Mutation p.G378R 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A4F5-06 6 70961825 70961825 G A COL9A1 Missense_Mutation p.P624S 0.45 benign(0.114) TCGA-FS-A4F5-06 6 71003913 71003913 G A COL9A1 Missense_Mutation p.A218V 0.37 unknown(0) TCGA-FS-A4F5-06 6 71004162 71004162 T C COL9A1 Missense_Mutation p.D135G 0.45 unknown(0) TCGA-FS-A4F5-06 6 75840598 75840598 C T COL12A1 Missense_Mutation p.G2013R 0.48 probably_damaging(0.989) TCGA-FS-A4F5-06 6 75893175 75893175 C T COL12A1 Silent p.L494L 0.45 TCGA-FS-A4F5-06 6 76023395 76023395 C T FILIP1 Missense_Mutation p.R718Q 0.46 tolerated(0.2) benign(0.341) TCGA-FS-A4F5-06 6 76023637 76023637 C T FILIP1 Silent p.E637E 0.44 TCGA-FS-A4F5-06 6 76024295 76024295 C T FILIP1 Missense_Mutation p.S418N 0.39 tolerated(0.13) benign(0.008) TCGA-FS-A4F5-06 6 76657030 76657030 C T IMPG1 Splice_Site p.X682_splice 0.38 TCGA-FS-A4F5-06 6 76657031 76657031 C T IMPG1 Missense_Mutation p.A682T 0.38 deleterious(0.04) probably_damaging(0.931) TCGA-FS-A4F5-06 6 79664553 79664553 G A PHIP Missense_Mutation p.P1344L 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 6 80228502 80228502 G A LCA5 Missense_Mutation p.S37L 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-FS-A4F5-06 6 88854317 88854317 C T CNR1 Missense_Mutation p.R226K 0.41 tolerated(0.07) probably_damaging(0.946) TCGA-FS-A4F5-06 6 90661173 90661173 C T BACH2 Missense_Mutation p.E218K 0.46 tolerated(0.58) benign(0.034) TCGA-FS-A4F5-06 6 93979369 93979369 C T EPHA7 Missense_Mutation p.E487K 0.23 deleterious(0.05) benign(0.185) TCGA-FS-A4F5-06 6 93979370 93979370 C T EPHA7 Silent p.R486R 0.23 TCGA-FS-A4F5-06 6 94120377 94120377 G A EPHA7 Missense_Mutation p.S225F 0.63 deleterious(0) possibly_damaging(0.694) TCGA-FS-A4F5-06 6 97051540 97051540 G A FHL5 Silent p.G17G 0.27 TCGA-FS-A4F5-06 7 100238652 100238652 C T TFR2 Missense_Mutation p.G78E 0.10 deleterious(0.01) possibly_damaging(0.717) TCGA-FS-A4F5-06 7 100244709 100244709 C T ACTL6B Splice_Site p.X274_splice 0.33 TCGA-FS-A4F5-06 7 100490111 100490111 G A ACHE Missense_Mutation p.S466F 0.61 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 7 100681847 100681847 G A MUC17 Missense_Mutation p.D2384N 0.21 unknown(0) TCGA-FS-A4F5-06 7 103244871 103244871 G A RELN Missense_Mutation p.A1023V 0.57 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F5-06 7 103338460 103338460 C T RELN Nonsense_Mutation p.W328* 0.34 TCGA-FS-A4F5-06 7 11418775 11418775 G A THSD7A Missense_Mutation p.R1575W 0.40 deleterious(0.03) probably_damaging(0.982) TCGA-FS-A4F5-06 7 114619811 114619811 C T MDFIC Silent p.S265S 0.49 TCGA-FS-A4F5-06 7 114619812 114619812 C T MDFIC Nonsense_Mutation p.Q266* 0.49 TCGA-FS-A4F5-06 7 115581044 115581044 G A TFEC Intron 0.67 TCGA-FS-A4F5-06 7 116381005 116381005 G A MET Missense_Mutation p.D543N 0.13 tolerated(0.72) benign(0.012) TCGA-FS-A4F5-06 7 11676086 11676086 G A THSD7A Silent p.G231G 0.50 TCGA-FS-A4F5-06 7 117180229 117180229 C T CFTR Silent p.F315F 0.32 TCGA-FS-A4F5-06 7 12258113 12258113 C T TMEM106B Missense_Mutation p.P83S 0.47 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 7 123152300 123152300 G A IQUB Missense_Mutation p.P32L 0.31 deleterious_low_confidence(0.01) benign(0.235) TCGA-FS-A4F5-06 7 126882873 126882873 G A GRM8 Missense_Mutation p.S129L 0.62 deleterious(0.01) benign(0.355) TCGA-FS-A4F5-06 7 127239494 127239494 C T FSCN3 Missense_Mutation p.R394C 0.39 deleterious(0) probably_damaging(0.927) TCGA-FS-A4F5-06 7 127255464 127255464 C T PAX4 Silent p.R37R 0.36 TCGA-FS-A4F5-06 7 128851581 128851581 G A SMO Missense_Mutation p.D636N 0.21 deleterious(0) benign(0.397) TCGA-FS-A4F5-06 7 129856385 129856385 A T SSMEM1 3'UTR 0.50 TCGA-FS-A4F5-06 7 140111659 140111659 C T RAB19 Intron 0.25 TCGA-FS-A4F5-06 7 141672725 141672725 G A TAS2R38 Silent p.F255F 0.54 TCGA-FS-A4F5-06 7 141755813 141755813 C T MGAM Missense_Mutation p.S1166F 0.35 tolerated(0.29) possibly_damaging(0.62) TCGA-FS-A4F5-06 7 141762434 141762434 G A MGAM Missense_Mutation p.E1397K 0.53 deleterious(0.04) possibly_damaging(0.807) TCGA-FS-A4F5-06 7 142458485 142458485 C T PRSS1 Silent p.S40S 0.08 TCGA-FS-A4F5-06 7 142459649 142459649 G A PRSS1 Silent p.E75E 0.17 TCGA-FS-A4F5-06 7 142479988 142479988 C T PRSS3P2 RNA 0.59 TCGA-FS-A4F5-06 7 142568095 142568095 G A EPHB6 Silent p.V912V 0.53 TCGA-FS-A4F5-06 7 142622605 142622605 C T TRPV5 Intron 0.18 TCGA-FS-A4F5-06 7 143039598 143039598 G A CLCN1 Missense_Mutation p.D644N 0.54 deleterious(0.01) benign(0.077) TCGA-FS-A4F5-06 7 143056102 143056102 A T FAM131B Missense_Mutation p.M95K 0.63 deleterious(0) possibly_damaging(0.547) TCGA-FS-A4F5-06 7 143088564 143088564 C T EPHA1 Missense_Mutation p.G973R 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 7 143098521 143098521 G A EPHA1 Missense_Mutation p.P110S 0.56 deleterious(0.01) benign(0.32) TCGA-FS-A4F5-06 7 143657556 143657556 C T OR2F1 Nonsense_Mutation p.Q165* 0.39 TCGA-FS-A4F5-06 7 143747584 143747584 C T OR2A5 Silent p.F30F 0.48 TCGA-FS-A4F5-06 7 143807472 143807472 G A OR2A2 Missense_Mutation p.R266Q 0.55 tolerated(0.22) benign(0.044) TCGA-FS-A4F5-06 7 144245694 144245694 C T TPK1 Missense_Mutation p.G168E 0.21 deleterious(0) probably_damaging(0.984) TCGA-FS-A4F5-06 7 146471445 146471445 C T CNTNAP2 Silent p.P60P 0.71 TCGA-FS-A4F5-06 7 149419603 149419603 G A KRBA1 Missense_Mutation p.R186K 0.48 tolerated(0.24) possibly_damaging(0.87) TCGA-FS-A4F5-06 7 150034116 150034116 G A LRRC61 Missense_Mutation p.E56K 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 7 150171666 150171666 G A GIMAP8 Missense_Mutation p.E417K 0.64 tolerated(0.15) benign(0.257) TCGA-FS-A4F5-06 7 150217482 150217482 G A GIMAP7 Silent p.Q140Q 0.33 TCGA-FS-A4F5-06 7 150883937 150883937 C T ASB10 Missense_Mutation p.R94Q 0.40 deleterious(0.04) benign(0.015) TCGA-FS-A4F5-06 7 151846058 151846058 G A KMT2C Silent p.V4318V 0.52 TCGA-FS-A4F5-06 7 154595636 154595636 C T DPP6 Silent p.I490I 0.71 TCGA-FS-A4F5-06 7 17349706 17349706 G A AHR Missense_Mutation p.R71K 0.33 deleterious(0) probably_damaging(0.959) TCGA-FS-A4F5-06 7 17349707 17349707 G T AHR Missense_Mutation p.R71S 0.34 deleterious(0) probably_damaging(0.983) TCGA-FS-A4F5-06 7 2472261 2472261 C T CHST12 5'UTR 0.53 TCGA-FS-A4F5-06 7 2966418 2966418 C T CARD11 Missense_Mutation p.E588K 0.33 tolerated(0.11) benign(0.005) TCGA-FS-A4F5-06 7 30693177 30693177 C T CRHR2 Missense_Mutation p.D406N 0.50 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 7 30963131 30963131 C T AQP1 Missense_Mutation p.P233S 0.45 deleterious(0.02) possibly_damaging(0.617) TCGA-FS-A4F5-06 7 31146210 31146210 T G ADCYAP1R1 Missense_Mutation p.V468G 0.50 tolerated(0.16) benign(0.04) TCGA-FS-A4F5-06 7 31855576 31855576 G A PDE1C Missense_Mutation p.S652F 0.46 deleterious_low_confidence(0.01) benign(0.079) TCGA-FS-A4F5-06 7 35242162 35242162 C T TBX20 Silent p.G408G 0.18 TCGA-FS-A4F5-06 7 38398350 38398350 G A TRGV3 Silent p.I39I 0.22 TCGA-FS-A4F5-06 7 41729237 41729237 G A INHBA 3'UTR 0.53 TCGA-FS-A4F5-06 7 43519324 43519324 G A HECW1 Missense_Mutation p.R1072Q 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A4F5-06 7 45725604 45725604 C T ADCY1 Missense_Mutation p.S706F 0.41 deleterious(0.04) possibly_damaging(0.526) TCGA-FS-A4F5-06 7 47331627 47331627 G A TNS3 Missense_Mutation p.P1285L 0.15 tolerated(0.06) probably_damaging(1) TCGA-FS-A4F5-06 7 53104185 53104185 C T POM121L12 Missense_Mutation p.S274F 0.50 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FS-A4F5-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.42 TCGA-FS-A4F5-06 7 6026709 6026709 G A PMS2 Nonsense_Mutation p.R563* 0.40 TCGA-FS-A4F5-06 7 6628267 6628267 C T ZDHHC4 Missense_Mutation p.P254L 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 7 75145510 75145510 T G Y_RNA 5'Flank 0.34 TCGA-FS-A4F5-06 7 82451874 82451874 C T PCLO Missense_Mutation p.E4910K 0.16 unknown(0) TCGA-FS-A4F5-06 7 82455959 82455959 C T PCLO Silent p.L4787L 0.55 TCGA-FS-A4F5-06 7 82582551 82582551 G A PCLO Missense_Mutation p.S2573F 0.36 unknown(0) TCGA-FS-A4F5-06 7 82585431 82585431 C T PCLO Missense_Mutation p.R1613Q 0.35 unknown(0) TCGA-FS-A4F5-06 7 82763687 82763687 G A PCLO Missense_Mutation p.P1060L 0.47 unknown(0) TCGA-FS-A4F5-06 7 88424217 88424217 G A C7orf62 Missense_Mutation p.P14S 0.56 tolerated_low_confidence(0.35) benign(0.124) TCGA-FS-A4F5-06 7 92734188 92734188 G A SAMD9 Missense_Mutation p.S408L 0.32 deleterious(0) possibly_damaging(0.782) TCGA-FS-A4F5-06 7 92761298 92761298 C T SAMD9L Silent p.R1329R 0.32 TCGA-FS-A4F5-06 7 92762118 92762118 G A SAMD9L Missense_Mutation p.S1056F 0.48 deleterious(0) probably_damaging(0.987) TCGA-FS-A4F5-06 7 94539357 94539357 G A PPP1R9A 5'UTR 0.36 TCGA-FS-A4F5-06 7 94993272 94993272 G A PON3 Missense_Mutation p.R200C 0.36 tolerated(0.07) benign(0.018) TCGA-FS-A4F5-06 7 95115410 95115410 G A ASB4 Missense_Mutation p.D43N 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-FS-A4F5-06 7 97369306 97369306 A G TAC1 3'UTR 0.70 TCGA-FS-A4F5-06 8 10466207 10466207 C T RP1L1 Missense_Mutation p.G1801R 0.26 unknown(0) TCGA-FS-A4F5-06 8 107781836 107781836 C T ABRA Missense_Mutation p.G195S 0.55 tolerated(0.09) probably_damaging(1) TCGA-FS-A4F5-06 8 108297037 108297037 C T ANGPT1 Missense_Mutation p.E360K 0.14 deleterious(0.02) benign(0.227) TCGA-FS-A4F5-06 8 110100524 110100524 G A TRHR Silent p.R261R 0.61 TCGA-FS-A4F5-06 8 113277713 113277713 C T CSMD3 Missense_Mutation p.M3205I 0.37 tolerated(0.05) benign(0.029) TCGA-FS-A4F5-06 8 118184839 118184839 G A SLC30A8 Silent p.T343T 0.37 TCGA-FS-A4F5-06 8 11995136 11995136 C T USP17L2 Nonsense_Mutation p.W378* 0.09 TCGA-FS-A4F5-06 8 125103757 125103757 C T FER1L6 Silent p.H1495H 0.51 TCGA-FS-A4F5-06 8 133152366 133152366 C T KCNQ3 Missense_Mutation p.E509K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 8 134256628 134256628 C T NDRG1 Silent p.A287A 0.55 TCGA-FS-A4F5-06 8 139767407 139767407 C T COL22A1 Missense_Mutation p.G675E 0.17 unknown(0) TCGA-FS-A4F5-06 8 139856381 139856381 G A COL22A1 Missense_Mutation p.R227C 0.39 unknown(0) TCGA-FS-A4F5-06 8 143436032 143436032 G A TSNARE1 Silent p.F18F 0.07 TCGA-FS-A4F5-06 8 16021677 16021677 C T MSR1 Silent p.Q238Q 0.17 TCGA-FS-A4F5-06 8 16026301 16026301 C T MSR1 Missense_Mutation p.G99E 0.54 tolerated(0.11) benign(0.32) TCGA-FS-A4F5-06 8 22884668 22884668 G A TNFRSF10B Missense_Mutation p.P305L 0.46 deleterious(0.01) possibly_damaging(0.799) TCGA-FS-A4F5-06 8 24359010 24359010 G A ADAM7 Missense_Mutation p.G710E 0.21 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F5-06 8 25715926 25715926 C T EBF2 Missense_Mutation p.M479I 0.24 tolerated_low_confidence(0.14) benign(0.007) TCGA-FS-A4F5-06 8 2876014 2876014 C T CSMD1 Missense_Mutation p.E2672K 0.31 probably_damaging(0.996) TCGA-FS-A4F5-06 8 2876145 2876145 G A CSMD1 Missense_Mutation p.P2628L 0.27 probably_damaging(0.999) TCGA-FS-A4F5-06 8 3889456 3889456 G A CSMD1 Missense_Mutation p.S194L 0.67 benign(0.008) TCGA-FS-A4F5-06 8 39695770 39695770 G A ADAM2 5'UTR 0.47 TCGA-FS-A4F5-06 8 56911988 56911988 C T LYN Missense_Mutation p.P406S 0.12 deleterious(0) benign(0.092) TCGA-FS-A4F5-06 8 66992709 66992709 C T DNAJC5B Missense_Mutation p.S144L 0.51 tolerated(0.21) benign(0.097) TCGA-FS-A4F5-06 8 67547092 67547092 G A VCPIP1 Nonsense_Mutation p.Q1105* 0.55 TCGA-FS-A4F5-06 8 69351755 69351755 A G C8orf34 Missense_Mutation p.T117A 0.65 deleterious(0.03) possibly_damaging(0.607) TCGA-FS-A4F5-06 8 7308374 7308374 C T SPAG11B Missense_Mutation p.G88E 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 8 75157198 75157198 C T JPH1 Missense_Mutation p.G491R 0.58 tolerated(0.17) benign(0.003) TCGA-FS-A4F5-06 8 76465400 76465400 C T HNF4G Missense_Mutation p.P195S 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A4F5-06 8 76471196 76471196 G A HNF4G Missense_Mutation p.M339I 0.45 deleterious(0.04) possibly_damaging(0.849) TCGA-FS-A4F5-06 8 77763923 77763923 A T ZFHX4 Missense_Mutation p.D1589V 0.38 possibly_damaging(0.904) TCGA-FS-A4F5-06 8 77767609 77767609 G A ZFHX4 Missense_Mutation p.E2818K 0.55 probably_damaging(0.98) TCGA-FS-A4F5-06 8 92301426 92301426 C T SLC26A7 Missense_Mutation p.P86S 0.53 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 9 101797334 101797334 G A COL15A1 Silent p.G706G 0.80 TCGA-FS-A4F5-06 9 107594984 107594984 G A ABCA1 Silent p.A460A 0.50 TCGA-FS-A4F5-06 9 120475867 120475867 C T TLR4 Silent p.F487F 0.88 TCGA-FS-A4F5-06 9 124111428 124111428 A C STOM Silent p.S165S 0.93 TCGA-FS-A4F5-06 9 138683967 138683967 C T KCNT1 Missense_Mutation p.S1223L 1.00 tolerated_low_confidence(0.1) benign(0.029) TCGA-FS-A4F5-06 9 139906958 139906958 G A ABCA2 Silent p.I1722I 0.82 TCGA-FS-A4F5-06 9 33443839 33443839 C T AQP3 Missense_Mutation p.G54S 0.85 deleterious(0) probably_damaging(0.979) TCGA-FS-A4F5-06 9 79324803 79324803 G A PRUNE2 Missense_Mutation p.P796L 0.90 deleterious(0.01) benign(0.164) TCGA-FS-A4F5-06 X 102612855 102612855 G A WBP5 Silent p.R81R 0.45 TCGA-FS-A4F5-06 X 102632283 102632283 G A NGFRAP1 Intron 0.64 TCGA-FS-A4F5-06 X 106845891 106845891 C T FRMPD3 Missense_Mutation p.T1574I 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F5-06 X 111025246 111025246 G A TRPC5 Missense_Mutation p.L673F 0.42 tolerated(0.06) benign(0.078) TCGA-FS-A4F5-06 X 111698178 111698178 C T ZCCHC16 Silent p.F74F 0.49 TCGA-FS-A4F5-06 X 117531026 117531026 C T WDR44 Missense_Mutation p.P383S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 X 118708942 118708942 C T UBE2A Silent p.F41F 0.47 TCGA-FS-A4F5-06 X 119708453 119708453 C T CUL4B Missense_Mutation p.G7E 0.43 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FS-A4F5-06 X 12734464 12734464 C T FRMPD4 Missense_Mutation p.S629F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-FS-A4F5-06 X 129148820 129148820 C T BCORL1 Missense_Mutation p.P691L 0.36 probably_damaging(0.999) TCGA-FS-A4F5-06 X 130222754 130222754 C T ARHGAP36 Missense_Mutation p.P547S 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A4F5-06 X 131212172 131212172 C T FRMD7 Missense_Mutation p.D625N 0.54 tolerated(0.35) benign(0.013) TCGA-FS-A4F5-06 X 134427838 134427838 A G ZNF75D Missense_Mutation p.W77R 0.42 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F5-06 X 135323391 135323391 G A MAP7D3 Missense_Mutation p.L155F 0.37 tolerated(0.16) possibly_damaging(0.76) TCGA-FS-A4F5-06 X 135430444 135430444 A G GPR112 Missense_Mutation p.K1527E 0.47 deleterious(0.02) benign(0.057) TCGA-FS-A4F5-06 X 138633289 138633289 C T F9 Missense_Mutation p.P197S 0.40 tolerated(0.92) benign(0) TCGA-FS-A4F5-06 X 148037456 148037456 G A AFF2 Silent p.G627G 0.42 TCGA-FS-A4F5-06 X 148059941 148059941 G A AFF2 Missense_Mutation p.D1176N 0.41 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F5-06 X 14883544 14883544 C T FANCB Missense_Mutation p.G30E 0.15 tolerated(0.38) benign(0.409) TCGA-FS-A4F5-06 X 149012990 149012990 G A MAGEA8 5'UTR 0.39 TCGA-FS-A4F5-06 X 149828911 149828911 G A MTM1 Missense_Mutation p.R474Q 0.41 deleterious(0.04) possibly_damaging(0.801) TCGA-FS-A4F5-06 X 150773146 150773146 G A PASD1 Silent p.R19R 0.45 TCGA-FS-A4F5-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.43 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F5-06 X 151900742 151900742 C A MAGEA12 Missense_Mutation p.G20V 0.43 tolerated(0.24) possibly_damaging(0.821) TCGA-FS-A4F5-06 X 151900743 151900743 C T MAGEA12 Missense_Mutation p.G20R 0.43 tolerated(0.78) possibly_damaging(0.589) TCGA-FS-A4F5-06 X 15266923 15266923 G A ASB9 Missense_Mutation p.P235S 0.49 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F5-06 X 153284189 153284189 G A IRAK1 Missense_Mutation p.P197L 0.52 deleterious(0.03) benign(0.028) TCGA-FS-A4F5-06 X 153594725 153594725 G A FLNA Silent p.P393P 0.36 TCGA-FS-A4F5-06 X 15376147 15376147 C T FIGF Missense_Mutation p.S157N 0.38 deleterious(0) probably_damaging(0.979) TCGA-FS-A4F5-06 X 154113378 154113378 G T H2AFB1 Silent p.R18R 0.17 TCGA-FS-A4F5-06 X 154157625 154157625 G A F8 Silent p.S1480S 0.29 TCGA-FS-A4F5-06 X 154282877 154282877 C T FUNDC2 Missense_Mutation p.S167L 0.43 tolerated(0.19) benign(0.008) TCGA-FS-A4F5-06 X 22292036 22292036 C T ZNF645 Missense_Mutation p.R310C 0.34 tolerated(0.19) benign(0) TCGA-FS-A4F5-06 X 24517001 24517001 C T PDK3 Missense_Mutation p.P102S 0.56 tolerated(0.73) benign(0.001) TCGA-FS-A4F5-06 X 2951235 2951235 G A ARSH Missense_Mutation p.E500K 0.43 deleterious(0.04) benign(0.067) TCGA-FS-A4F5-06 X 29973502 29973502 G A IL1RAPL1 Nonsense_Mutation p.W552* 0.44 TCGA-FS-A4F5-06 X 30254886 30254886 A G MAGEB3 Missense_Mutation p.E282G 0.14 deleterious(0) possibly_damaging(0.903) TCGA-FS-A4F5-06 X 31201001 31201001 G A DMD Silent p.I3276I 0.51 TCGA-FS-A4F5-06 X 3238772 3238772 G A MXRA5 Missense_Mutation p.P1652S 0.46 deleterious(0.05) benign(0.141) TCGA-FS-A4F5-06 X 35821177 35821177 G A MAGEB16 Missense_Mutation p.M288I 0.19 deleterious(0.04) probably_damaging(0.974) TCGA-FS-A4F5-06 X 38128990 38128990 G A TM4SF2 Intron 0.43 TCGA-FS-A4F5-06 X 41069821 41069821 C T USP9X Missense_Mutation p.S1692L 0.36 deleterious(0) probably_damaging(0.985) TCGA-FS-A4F5-06 X 41555494 41555494 T G GPR34 Missense_Mutation p.M203R 0.31 tolerated(0.66) benign(0.004) TCGA-FS-A4F5-06 X 43571159 43571159 G A MAOA Nonsense_Mutation p.W116* 0.20 TCGA-FS-A4F5-06 X 47307368 47307368 G A ZNF41 Missense_Mutation p.H601Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-FS-A4F5-06 X 48463292 48463292 G A WDR13 Missense_Mutation p.A444T 0.55 tolerated(0.51) benign(0.292) TCGA-FS-A4F5-06 X 48887379 48887379 G A TFE3 3'UTR 0.50 TCGA-FS-A4F5-06 X 49855099 49855099 C T CLCN5 Missense_Mutation p.P691S 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A4F5-06 X 50031800 50031800 G A CCNB3 Silent p.T39T 0.25 TCGA-FS-A4F5-06 X 51487951 51487951 G A GSPT2 Missense_Mutation p.G410E 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-FS-A4F5-06 X 53284082 53284082 G A IQSEC2 Missense_Mutation p.S344F 0.38 tolerated(0.59) possibly_damaging(0.731) TCGA-FS-A4F5-06 X 54785292 54785292 C T ITIH6 Silent p.T405T 0.37 TCGA-FS-A4F5-06 X 64140043 64140043 C T ZC4H2 Missense_Mutation p.E106K 0.48 tolerated(0.8) benign(0.138) TCGA-FS-A4F5-06 X 67937723 67937723 G A STARD8 Missense_Mutation p.D323N 0.36 tolerated(0.15) benign(0.013) TCGA-FS-A4F5-06 X 68749603 68749603 C T FAM155B Missense_Mutation p.P408L 0.45 tolerated(0.29) probably_damaging(0.991) TCGA-FS-A4F5-06 X 69649858 69649858 G A GDPD2 Missense_Mutation p.E418K 0.46 tolerated(0.17) benign(0.011) TCGA-FS-A4F5-06 X 70472696 70472696 G A ZMYM3 Missense_Mutation p.P137L 0.58 deleterious_low_confidence(0.02) benign(0.001) TCGA-FS-A4F5-06 X 71349823 71349823 G A RGAG4 Missense_Mutation p.S523L 0.48 deleterious_low_confidence(0) unknown(0) TCGA-FS-A4F5-06 X 71360099 71360099 A G NHSL2 Missense_Mutation p.T901A 0.28 tolerated(0.1) benign(0.011) TCGA-FS-A4F5-06 X 71522095 71522095 C T CITED1 Splice_Site p.X47_splice 0.30 TCGA-FS-A4F5-06 X 73046784 73046784 C T XIST RNA 0.51 TCGA-FS-A4F5-06 X 73524277 73524277 A G ZCCHC13 Missense_Mutation p.N59S 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-FS-A4F5-06 X 73962840 73962840 C T KIAA2022 Missense_Mutation p.E518K 0.33 deleterious(0.03) probably_damaging(0.913) TCGA-FS-A4F5-06 X 77301985 77301985 T A ATP7A Missense_Mutation p.L1474Q 0.21 tolerated(0.3) possibly_damaging(0.453) TCGA-FS-A4F5-06 X 84526585 84526585 A T ZNF711 Missense_Mutation p.K679N 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-FS-A4F5-06 X 86068206 86068206 G A DACH2 Missense_Mutation p.R488Q 0.53 deleterious(0.03) benign(0.01) TCGA-FS-A4F5-06 X 86888817 86888817 G T KLHL4 Missense_Mutation p.V540L 0.07 deleterious(0) possibly_damaging(0.907) TCGA-FS-A4F8-06 10 103298056 103298056 T A BTRC Silent p.I528I 0.07 TCGA-FS-A4F8-06 10 121203251 121203251 C T GRK5 Missense_Mutation p.S418F 0.15 deleterious(0) possibly_damaging(0.897) TCGA-FS-A4F8-06 10 123844357 123844357 C T TACC2 Missense_Mutation p.P781L 0.09 benign(0.051) TCGA-FS-A4F8-06 10 124361487 124361487 G A DMBT1 Missense_Mutation p.G1173E 0.24 deleterious(0.03) unknown(0) TCGA-FS-A4F8-06 10 1279761 1279761 G A ADARB2 Missense_Mutation p.S463L 0.15 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 10 28196592 28196592 C T ARMC4 Silent p.K870K 0.16 TCGA-FS-A4F8-06 10 28250509 28250509 C T ARMC4 Silent p.V458V 0.13 TCGA-FS-A4F8-06 10 32560521 32560521 G A EPC1 Missense_Mutation p.S800F 0.17 deleterious(0) benign(0.197) TCGA-FS-A4F8-06 10 37508119 37508119 G A ANKRD30A Missense_Mutation p.R1104K 0.20 tolerated(0.79) benign(0.364) TCGA-FS-A4F8-06 10 49628257 49628257 C T MAPK8 Silent p.F170F 0.10 TCGA-FS-A4F8-06 10 50901947 50901947 C T C10orf53 Intron 0.15 TCGA-FS-A4F8-06 10 61829763 61829763 C T ANK3 Missense_Mutation p.E3626K 0.10 probably_damaging(0.956) TCGA-FS-A4F8-06 10 7262417 7262417 G A SFMBT2 Missense_Mutation p.S429F 0.20 deleterious(0) probably_damaging(0.99) TCGA-FS-A4F8-06 10 88476299 88476299 G A LDB3 Missense_Mutation p.E488K 0.27 tolerated(0.07) probably_damaging(0.931) TCGA-FS-A4F8-06 10 88702692 88702692 C T MMRN2 Missense_Mutation p.E617K 0.27 deleterious(0) probably_damaging(0.929) TCGA-FS-A4F8-06 10 90362398 90362398 G A LIPJ Nonsense_Mutation p.W263* 0.08 TCGA-FS-A4F8-06 10 95719963 95719963 A T PIPSL RNA 0.10 TCGA-FS-A4F8-06 11 10647549 10647549 C T MRVI1 Silent p.Q444Q 0.24 TCGA-FS-A4F8-06 11 108381647 108381647 G A EXPH5 Silent p.N1529N 0.19 TCGA-FS-A4F8-06 11 4661948 4661948 G A OR51D1 Missense_Mutation p.E310K 0.12 deleterious(0.03) benign(0.041) TCGA-FS-A4F8-06 11 46750981 46750981 G A F2 Silent p.K508K 0.07 TCGA-FS-A4F8-06 11 5565961 5565961 A T OR52H1 Missense_Mutation p.F265I 0.12 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F8-06 11 57094314 57094314 A T SSRP1 Missense_Mutation p.S641T 0.13 tolerated(0.3) unknown(0) TCGA-FS-A4F8-06 11 64601265 64601265 C T CDC42BPG Missense_Mutation p.R837K 0.15 tolerated(0.82) benign(0.001) TCGA-FS-A4F8-06 11 65822642 65822642 C T SF3B2 Silent p.G118G 0.30 TCGA-FS-A4F8-06 11 74799858 74799858 C T OR2AT4 Missense_Mutation p.D301N 0.19 deleterious(0.02) probably_damaging(0.928) TCGA-FS-A4F8-06 11 85445603 85445603 G A SYTL2 Missense_Mutation p.P256S 0.06 tolerated(0.09) benign(0.019) TCGA-FS-A4F8-06 12 112194136 112194136 G A ACAD10 Splice_Site p.X1045_splice 0.14 TCGA-FS-A4F8-06 12 121881908 121881908 C T KDM2B Silent p.P786P 0.12 TCGA-FS-A4F8-06 12 123186666 123186666 T A HCAR2 3'UTR 0.07 TCGA-FS-A4F8-06 12 123214542 123214542 G A HCAR1 Silent p.F115F 0.13 TCGA-FS-A4F8-06 12 18891609 18891609 G A CAPZA3 Missense_Mutation p.G136E 0.10 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F8-06 12 49087949 49087949 G A CCNT1 Missense_Mutation p.R350W 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-FS-A4F8-06 12 51685575 51685575 C T BIN2 Missense_Mutation p.A439T 0.19 deleterious_low_confidence(0.03) benign(0.068) TCGA-FS-A4F8-06 12 52961950 52961950 T C KRT74 Intron 0.20 TCGA-FS-A4F8-06 12 7457031 7457031 T C ACSM4 Missense_Mutation p.L35P 0.15 deleterious(0.04) benign(0.003) TCGA-FS-A4F8-06 12 76749711 76749711 G A OSBPL8 Silent p.L876L 0.15 TCGA-FS-A4F8-06 13 103346827 103346827 C T METTL21C Missense_Mutation p.A8T 0.14 tolerated_low_confidence(0.58) benign(0) TCGA-FS-A4F8-06 13 113714963 113714963 C T MCF2L Silent p.F142F 0.08 TCGA-FS-A4F8-06 13 114817546 114817546 G A RASA3 Silent p.F86F 0.14 TCGA-FS-A4F8-06 13 28913433 28913433 G A FLT1 Missense_Mutation p.S787F 0.11 deleterious(0.02) benign(0.024) TCGA-FS-A4F8-06 13 35756497 35756497 G A NBEA Missense_Mutation p.D1555N 0.13 deleterious(0) possibly_damaging(0.889) TCGA-FS-A4F8-06 13 61102941 61102941 T C TDRD3 Missense_Mutation p.Y528H 0.28 tolerated(0.53) benign(0.008) TCGA-FS-A4F8-06 13 72131228 72131228 G A DACH1 Missense_Mutation p.P502S 0.11 benign(0.227) TCGA-FS-A4F8-06 14 104570979 104570979 C T ASPG Silent p.V319V 0.14 TCGA-FS-A4F8-06 14 105859672 105859672 G A PACS2 Missense_Mutation p.V866I 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-FS-A4F8-06 14 51382590 51382590 G A PYGL Missense_Mutation p.P398S 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 14 51382591 51382591 G A PYGL Silent p.L397L 0.12 TCGA-FS-A4F8-06 14 65390803 65390803 C T CHURC1-FNTB Missense_Mutation p.S46F 0.13 tolerated_low_confidence(0.64) benign(0.042) TCGA-FS-A4F8-06 14 71575507 71575507 C T PCNX Missense_Mutation p.S2163L 0.15 deleterious(0.01) benign(0.293) TCGA-FS-A4F8-06 14 74086109 74086109 G A ACOT6 Missense_Mutation p.D64N 0.06 tolerated(0.4) possibly_damaging(0.814) TCGA-FS-A4F8-06 14 76488735 76488735 G A IFT43 Silent p.S71S 0.14 TCGA-FS-A4F8-06 14 93730273 93730273 G A BTBD7 Missense_Mutation p.S410F 0.09 deleterious(0) probably_damaging(0.961) TCGA-FS-A4F8-06 15 28202788 28202788 C A OCA2 Missense_Mutation p.G577V 0.17 tolerated(0.06) possibly_damaging(0.653) TCGA-FS-A4F8-06 15 40582260 40582260 G A PLCB2 Missense_Mutation p.S1078F 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-FS-A4F8-06 15 45397874 45397874 G A DUOX2 Silent p.I767I 0.21 TCGA-FS-A4F8-06 15 50555432 50555432 C T HDC Silent p.G68G 0.09 TCGA-FS-A4F8-06 15 66782785 66782785 G A SNAPC5 3'Flank 0.17 TCGA-FS-A4F8-06 15 80263245 80263245 G T BCL2A1 Missense_Mutation p.Q73K 0.20 tolerated(0.15) benign(0.022) TCGA-FS-A4F8-06 15 90321375 90321375 A T MESP2 Missense_Mutation p.Q335L 0.16 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-FS-A4F8-06 16 11778031 11778031 G A TXNDC11 Missense_Mutation p.P742S 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 16 15831303 15831303 T C MYH11 Intron 0.18 TCGA-FS-A4F8-06 16 16138351 16138351 C T ABCC1 Missense_Mutation p.P285L 0.08 tolerated(0.66) benign(0.002) TCGA-FS-A4F8-06 16 19236121 19236121 C T SYT17 Missense_Mutation p.P397S 0.18 tolerated(0.07) benign(0.1) TCGA-FS-A4F8-06 16 20043605 20043605 C T GPR139 Missense_Mutation p.E172K 0.18 tolerated(0.19) benign(0.022) TCGA-FS-A4F8-06 16 20681305 20681305 C T ACSM1 Silent p.R252R 0.20 TCGA-FS-A4F8-06 16 2905646 2905646 G A PRSS22 Missense_Mutation p.P163L 0.11 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 16 31200457 31200457 A G FUS Silent p.S282S 0.07 TCGA-FS-A4F8-06 16 338047 338047 G A AXIN1 3'UTR 0.18 TCGA-FS-A4F8-06 16 48580158 48580158 G C N4BP1 Missense_Mutation p.Q745E 0.09 deleterious(0) probably_damaging(0.973) TCGA-FS-A4F8-06 16 50373952 50373952 G A BRD7 Missense_Mutation p.P213S 0.12 deleterious(0) probably_damaging(0.983) TCGA-FS-A4F8-06 16 55539276 55539276 C T MMP2 Silent p.A635A 0.19 TCGA-FS-A4F8-06 16 62055094 62055094 C T CDH8 Missense_Mutation p.E72K 0.10 deleterious(0) possibly_damaging(0.888) TCGA-FS-A4F8-06 16 66431973 66431973 C T CDH5 Silent p.Y483Y 0.20 TCGA-FS-A4F8-06 17 3436091 3436091 C T TRPV3 Missense_Mutation p.D309N 0.09 tolerated(1) benign(0.201) TCGA-FS-A4F8-06 17 3436092 3436092 C T TRPV3 Silent p.E308E 0.09 TCGA-FS-A4F8-06 17 3629315 3629315 G A GSG2 Missense_Mutation p.D696N 0.12 deleterious(0.04) benign(0.428) TCGA-FS-A4F8-06 17 38185157 38185157 G A MED24 Missense_Mutation p.S444F 0.15 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F8-06 17 38905539 38905539 C T KRT25 Missense_Mutation p.G405E 0.08 tolerated(0.31) benign(0.004) TCGA-FS-A4F8-06 17 54428221 54428221 C T ANKFN1 Missense_Mutation p.R98C 0.14 deleterious(0) probably_damaging(0.972) TCGA-FS-A4F8-06 17 63173858 63173858 G A RGS9 Missense_Mutation p.M197I 0.09 tolerated(0.13) benign(0.001) TCGA-FS-A4F8-06 17 6683191 6683191 G A FBXO39 Missense_Mutation p.D2N 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.678) TCGA-FS-A4F8-06 17 73623540 73623540 C T RECQL5 Missense_Mutation p.E980K 0.09 deleterious(0) possibly_damaging(0.79) TCGA-FS-A4F8-06 17 74004825 74004825 C T EVPL Silent p.Q1487Q 0.13 TCGA-FS-A4F8-06 17 76799510 76799510 G A USP36 Missense_Mutation p.L923F 0.12 tolerated(0.49) benign(0.032) TCGA-FS-A4F8-06 18 31325379 31325379 G A ASXL3 Missense_Mutation p.G1856E 0.06 possibly_damaging(0.632) TCGA-FS-A4F8-06 18 52901848 52901848 G A TCF4 Missense_Mutation p.P575S 0.20 tolerated(0.14) benign(0.004) TCGA-FS-A4F8-06 18 61328342 61328342 C T SERPINB3 Missense_Mutation p.A37T 0.16 tolerated(0.08) possibly_damaging(0.903) TCGA-FS-A4F8-06 19 13443692 13443692 G A CACNA1A Missense_Mutation p.P416S 0.10 probably_damaging(0.932) TCGA-FS-A4F8-06 19 19626088 19626088 G A TSSK6 Missense_Mutation p.P50L 0.22 tolerated(0.1) benign(0.097) TCGA-FS-A4F8-06 19 19626089 19626089 G A TSSK6 Missense_Mutation p.P50S 0.22 tolerated(0.34) benign(0.062) TCGA-FS-A4F8-06 19 2415763 2415763 G A TMPRSS9 Missense_Mutation p.E523K 0.32 tolerated(0.16) probably_damaging(0.941) TCGA-FS-A4F8-06 19 31039382 31039382 G A ZNF536 Silent p.V952V 0.19 TCGA-FS-A4F8-06 19 3548013 3548013 C A MFSD12 Missense_Mutation p.V224L 0.10 benign(0.431) TCGA-FS-A4F8-06 19 36362522 36362522 C T APLP1 Silent p.S182S 0.19 TCGA-FS-A4F8-06 19 37676149 37676149 G A ZNF585B Missense_Mutation p.H764Y 0.09 deleterious(0.01) benign(0.047) TCGA-FS-A4F8-06 19 37838725 37838725 G A HKR1 Silent p.G88G 0.08 TCGA-FS-A4F8-06 19 4117584 4117584 G A MAP2K2 Missense_Mutation p.L46F 0.13 tolerated(0.07) possibly_damaging(0.842) TCGA-FS-A4F8-06 19 43762228 43762228 G A PSG9 Intron 0.43 TCGA-FS-A4F8-06 19 4902842 4902842 G A ARRDC5 Missense_Mutation p.P13L 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.554) TCGA-FS-A4F8-06 19 55607264 55607264 G A PPP1R12C Missense_Mutation p.P400S 0.25 tolerated(0.26) benign(0.368) TCGA-FS-A4F8-06 19 56934293 56934293 C T ZNF583 Missense_Mutation p.S89L 0.11 tolerated(0.12) benign(0.03) TCGA-FS-A4F8-06 19 758338 758338 G A MISP Silent p.T464T 0.16 TCGA-FS-A4F8-06 19 9069874 9069874 C T MUC16 Missense_Mutation p.E5858K 0.17 unknown(0) TCGA-FS-A4F8-06 1 110607256 110607256 G A ALX3 Missense_Mutation p.R183W 0.20 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 1 110607257 110607257 G A ALX3 Silent p.A182A 0.20 TCGA-FS-A4F8-06 1 118045494 118045494 C T MAN1A2 Silent p.C565C 0.10 TCGA-FS-A4F8-06 1 151141482 151141482 G A SCNM1 Missense_Mutation p.G205E 0.23 tolerated(0.28) probably_damaging(1) TCGA-FS-A4F8-06 1 152280647 152280647 G A FLG Missense_Mutation p.R2239W 0.22 possibly_damaging(0.898) TCGA-FS-A4F8-06 1 16342059 16342059 G A HSPB7 3'UTR 0.25 TCGA-FS-A4F8-06 1 172434464 172434464 C T C1orf105 Nonsense_Mutation p.Q123* 0.26 TCGA-FS-A4F8-06 1 175372465 175372465 C T TNR Missense_Mutation p.E263K 0.20 tolerated(0.44) benign(0.001) TCGA-FS-A4F8-06 1 18691963 18691963 G A IGSF21 Missense_Mutation p.E263K 0.18 tolerated(0.06) benign(0.105) TCGA-FS-A4F8-06 1 214498026 214498026 C T SMYD2 Missense_Mutation p.H193Y 0.18 deleterious(0.01) benign(0.421) TCGA-FS-A4F8-06 1 9323666 9323666 T G H6PD Missense_Mutation p.L372V 0.08 tolerated(0.44) benign(0.005) TCGA-FS-A4F8-06 20 33049960 33049960 C T ITCH Missense_Mutation p.P494L 0.18 tolerated(0.07) benign(0.079) TCGA-FS-A4F8-06 20 5897000 5897000 G A CHGB Silent p.R26R 0.19 TCGA-FS-A4F8-06 20 61959465 61959465 T C COL20A1 Missense_Mutation p.L1200P 0.12 deleterious(0.02) benign(0.32) TCGA-FS-A4F8-06 21 15323568 15323568 T C ANKRD20A11P RNA 0.12 TCGA-FS-A4F8-06 21 31655039 31655039 C A KRTAP24-1 Missense_Mutation p.C71F 0.24 deleterious(0.05) probably_damaging(0.951) TCGA-FS-A4F8-06 21 45563173 45563173 A G C21orf33 Missense_Mutation p.K203R 0.17 tolerated(0.66) benign(0.052) TCGA-FS-A4F8-06 21 46066487 46066487 G A KRTAP10-11 Missense_Mutation p.A38T 0.18 tolerated(0.26) unknown(0) TCGA-FS-A4F8-06 22 31600480 31600480 C T RNF185 Missense_Mutation p.P163S 0.19 tolerated(0.5) benign(0.021) TCGA-FS-A4F8-06 2 103040432 103040432 G A IL18RAP Missense_Mutation p.D78N 0.22 tolerated(0.42) benign(0.006) TCGA-FS-A4F8-06 2 11337309 11337309 G A ROCK2 Missense_Mutation p.P1149S 0.18 tolerated(0.33) benign(0.04) TCGA-FS-A4F8-06 2 165584552 165584552 C T COBLL1 Silent p.Q196Q 0.12 TCGA-FS-A4F8-06 2 179584164 179584164 G A TTN Missense_Mutation p.P7985S 0.12 TCGA-FS-A4F8-06 2 179605802 179605802 G A TTN Missense_Mutation p.P4053L 0.09 TCGA-FS-A4F8-06 2 179632760 179632760 C T TTN Missense_Mutation p.E3096K 0.08 TCGA-FS-A4F8-06 2 192225446 192225446 G A MYO1B Missense_Mutation p.E218K 0.06 tolerated(0.31) benign(0.099) TCGA-FS-A4F8-06 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.15 deleterious(0) possibly_damaging(0.846) TCGA-FS-A4F8-06 2 197990618 197990618 G A ANKRD44 Silent p.V135V 0.17 TCGA-FS-A4F8-06 2 201535459 201535459 C T AOX1 3'UTR 0.10 TCGA-FS-A4F8-06 2 211518789 211518789 G A CPS1 Missense_Mutation p.R1180Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F8-06 2 219110154 219110154 A G ARPC2 Silent p.E187E 0.12 TCGA-FS-A4F8-06 2 220331918 220331918 G A SPEG Silent p.L968L 0.12 TCGA-FS-A4F8-06 2 230654432 230654432 A T TRIP12 Silent p.I1455I 0.11 TCGA-FS-A4F8-06 2 236659084 236659084 G A AGAP1 Missense_Mutation p.E209K 0.11 deleterious(0) benign(0.176) TCGA-FS-A4F8-06 2 27666038 27666038 G A KRTCAP3 Missense_Mutation p.G124D 0.07 tolerated(0.45) probably_damaging(0.976) TCGA-FS-A4F8-06 2 80782973 80782973 T C CTNNA2 Missense_Mutation p.Y566H 0.15 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F8-06 2 88828806 88828806 C T TEX37 Silent p.A119A 0.22 TCGA-FS-A4F8-06 3 112642585 112642585 T C CD200R1 Missense_Mutation p.N329S 0.17 tolerated(0.37) probably_damaging(0.953) TCGA-FS-A4F8-06 3 121353207 121353207 C T HCLS1 Silent p.R250R 0.18 TCGA-FS-A4F8-06 3 169569529 169569529 G A LRRC31 Missense_Mutation p.S346L 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 3 183855532 183855532 C T EIF2B5 Missense_Mutation p.L149F 0.19 deleterious(0.01) benign(0.271) TCGA-FS-A4F8-06 3 194063399 194063399 G A CPN2 Silent p.S11S 0.20 TCGA-FS-A4F8-06 3 42251783 42251783 T A TRAK1 Intron 0.21 TCGA-FS-A4F8-06 3 45153928 45153928 G A CDCP1 Missense_Mutation p.S101L 0.22 deleterious(0) benign(0.171) TCGA-FS-A4F8-06 3 51263088 51263088 C T DOCK3 Missense_Mutation p.R421C 0.24 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F8-06 3 55922487 55922487 C T ERC2 Missense_Mutation p.E832K 0.24 deleterious(0) probably_damaging(0.988) TCGA-FS-A4F8-06 3 9034696 9034696 C T SRGAP3 Missense_Mutation p.E818K 0.12 deleterious(0.04) benign(0.119) TCGA-FS-A4F8-06 4 1244973 1244973 G A CTBP1 5'Flank 0.20 TCGA-FS-A4F8-06 4 126336563 126336563 G A FAT4 Missense_Mutation p.D2149N 0.16 probably_damaging(0.999) TCGA-FS-A4F8-06 4 128814897 128814897 G A PLK4 Missense_Mutation p.G808D 0.10 tolerated(0.05) possibly_damaging(0.768) TCGA-FS-A4F8-06 4 144124642 144124642 A C USP38 Missense_Mutation p.T378P 0.33 deleterious(0.03) benign(0.014) TCGA-FS-A4F8-06 4 153691266 153691266 C T TIGD4 Silent p.K297K 0.19 TCGA-FS-A4F8-06 4 1730378 1730378 C T TACC3 Missense_Mutation p.P417S 0.21 deleterious(0.05) benign(0.321) TCGA-FS-A4F8-06 4 183675897 183675897 C T TENM3 Silent p.Y1459Y 0.32 TCGA-FS-A4F8-06 4 188924340 188924340 G A ZFP42 Missense_Mutation p.V127I 0.06 tolerated(0.25) benign(0.003) TCGA-FS-A4F8-06 4 70455304 70455304 C T UGT2A1 Missense_Mutation p.R623Q 0.22 deleterious(0.03) possibly_damaging(0.782) TCGA-FS-A4F8-06 4 8218844 8218844 C T SH3TC1 Silent p.S263S 0.16 TCGA-FS-A4F8-06 5 13737548 13737548 C T DNAH5 Silent p.R3756R 0.11 TCGA-FS-A4F8-06 5 140208464 140208464 G A PCDHA6 Missense_Mutation p.R263K 0.09 tolerated_low_confidence(1) benign(0.005) TCGA-FS-A4F8-06 5 140255196 140255196 C T PCDHA12 Missense_Mutation p.R47C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-FS-A4F8-06 5 161113333 161113333 C T GABRA6 Missense_Mutation p.R46W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F8-06 5 168216588 168216588 C A SLIT3 Missense_Mutation p.Q352H 0.22 tolerated(0.23) benign(0.001) TCGA-FS-A4F8-06 5 179554673 179554673 C A RASGEF1C Missense_Mutation p.R217L 0.17 deleterious(0.01) benign(0.038) TCGA-FS-A4F8-06 5 50685526 50685526 C T ISL1 Silent p.H175H 0.13 TCGA-FS-A4F8-06 5 56161183 56161183 G A MAP3K1 Missense_Mutation p.R351H 0.11 deleterious(0) possibly_damaging(0.724) TCGA-FS-A4F8-06 5 73205311 73205311 C T ARHGEF28 Silent p.L1412L 0.25 TCGA-FS-A4F8-06 5 79027271 79027271 C T CMYA5 Missense_Mutation p.P895S 0.25 probably_damaging(0.992) TCGA-FS-A4F8-06 5 89986740 89986740 G A GPR98 Missense_Mutation p.G2278E 0.09 probably_damaging(0.972) TCGA-FS-A4F8-06 6 109748297 109748297 C T PPIL6 Silent p.E161E 0.33 TCGA-FS-A4F8-06 6 109748299 109748299 C T PPIL6 Missense_Mutation p.E161K 0.33 deleterious(0) probably_damaging(0.992) TCGA-FS-A4F8-06 6 27215684 27215684 G T PRSS16 Nonsense_Mutation p.E32* 0.17 TCGA-FS-A4F8-06 6 28294491 28294491 T C ZSCAN31 Missense_Mutation p.K225E 0.14 tolerated(0.61) benign(0.004) TCGA-FS-A4F8-06 6 31927100 31927100 C T SKIV2L Silent p.L17L 0.18 TCGA-FS-A4F8-06 6 38690878 38690878 C T DNAH8 5'Flank 0.18 TCGA-FS-A4F8-06 6 39282993 39282993 G A KCNK16 Silent p.L292L 0.18 TCGA-FS-A4F8-06 6 42236589 42236589 C T TRERF1 Missense_Mutation p.G247E 0.10 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-FS-A4F8-06 6 56501426 56501428 GCG CA DST Frame_Shift_Del p.T459Mfs*17 0.13 TCGA-FS-A4F8-06 6 6626623 6626623 C T LY86 Silent p.P107P 0.24 TCGA-FS-A4F8-06 6 75843624 75843624 G A COL12A1 Missense_Mutation p.R1872C 0.07 probably_damaging(0.999) TCGA-FS-A4F8-06 7 100678524 100678524 G A MUC17 Missense_Mutation p.G1276E 0.16 unknown(0) TCGA-FS-A4F8-06 7 103293071 103293071 G A RELN Missense_Mutation p.L564F 0.25 tolerated(0.09) probably_damaging(0.997) TCGA-FS-A4F8-06 7 106509799 106509799 G A PIK3CG Nonsense_Mutation p.W598* 0.13 TCGA-FS-A4F8-06 7 122001057 122001057 A C CADPS2 Missense_Mutation p.V1133G 0.17 deleterious(0) probably_damaging(0.934) TCGA-FS-A4F8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-FS-A4F8-06 7 141722068 141722068 G A MGAM Silent p.L237L 0.11 TCGA-FS-A4F8-06 7 142176756 142176756 C T TRBV7-4 Missense_Mutation p.G12D 0.19 deleterious(0.03) possibly_damaging(0.588) TCGA-FS-A4F8-06 7 142326766 142326766 G A TRBV19 Missense_Mutation p.G22R 0.14 tolerated(0.17) benign(0.011) TCGA-FS-A4F8-06 7 142494712 142494712 G A TRBJ2-4 Silent p.G11G 0.21 TCGA-FS-A4F8-06 7 142626216 142626216 C T TRPV5 Splice_Site p.X163_splice 0.19 TCGA-FS-A4F8-06 7 143175712 143175712 C T TAS2R41 Silent p.S249S 0.12 TCGA-FS-A4F8-06 7 150554789 150554789 C T AOC1 Missense_Mutation p.H411Y 0.18 tolerated(0.19) benign(0.009) TCGA-FS-A4F8-06 7 15652223 15652223 A C MEOX2 Missense_Mutation p.F235C 0.12 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F8-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.18 tolerated(0.19) benign(0.198) TCGA-FS-A4F8-06 7 33312736 33312736 A G BBS9 Missense_Mutation p.K272R 0.10 tolerated(0.19) possibly_damaging(0.493) TCGA-FS-A4F8-06 7 34192733 34192733 G A BMPER Missense_Mutation p.D636N 0.15 deleterious(0.05) possibly_damaging(0.824) TCGA-FS-A4F8-06 7 56140705 56140705 G A SUMF2 Silent p.E99E 0.28 TCGA-FS-A4F8-06 7 70255187 70255187 G A AUTS2 Silent p.E995E 0.21 TCGA-FS-A4F8-06 7 92762896 92762896 G A SAMD9L Missense_Mutation p.P797S 0.12 deleterious(0.01) possibly_damaging(0.819) TCGA-FS-A4F8-06 7 99306869 99306869 C T CYP3A7 Missense_Mutation p.D348N 0.24 tolerated(0.1) possibly_damaging(0.494) TCGA-FS-A4F8-06 8 106813502 106813502 G A ZFPM2 Missense_Mutation p.E398K 0.16 deleterious(0.02) possibly_damaging(0.601) TCGA-FS-A4F8-06 8 10756264 10756264 A G XKR6 Missense_Mutation p.F375S 0.08 deleterious(0) possibly_damaging(0.88) TCGA-FS-A4F8-06 8 130891648 130891648 G A FAM49B Silent p.F20F 0.15 TCGA-FS-A4F8-06 8 141568589 141568589 G A AGO2 Silent p.H291H 0.21 TCGA-FS-A4F8-06 8 2054075 2054075 C T MYOM2 Silent p.I926I 0.16 TCGA-FS-A4F8-06 8 39873121 39873121 G A IDO2 Silent p.%3D 0.16 TCGA-FS-A4F8-06 8 55540842 55540842 C T RP1 Missense_Mutation p.S1467F 0.24 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F8-06 8 69621313 69621313 C T C8orf34 Silent p.F442F 0.12 TCGA-FS-A4F8-06 8 76476288 76476288 C T HNF4G Missense_Mutation p.S432L 0.19 tolerated_low_confidence(0.15) benign(0.002) TCGA-FS-A4F8-06 8 77767909 77767909 C T ZFHX4 Missense_Mutation p.P2918S 0.24 possibly_damaging(0.889) TCGA-FS-A4F8-06 9 119097172 119097172 C T PAPPA Silent p.L1144L 0.25 TCGA-FS-A4F8-06 9 125288801 125288801 G A OR1N1 Silent p.L258L 0.21 TCGA-FS-A4F8-06 9 130473571 130473571 G A C9orf117 Silent p.T217T 0.15 TCGA-FS-A4F8-06 9 130677018 130677018 C T ST6GALNAC4 Missense_Mutation p.D39N 0.37 benign(0.013) TCGA-FS-A4F8-06 9 137688743 137688743 C G COL5A1 Missense_Mutation p.P965R 0.23 unknown(0) TCGA-FS-A4F8-06 9 137688744 137688744 C T COL5A1 Silent p.P965P 0.24 TCGA-FS-A4F8-06 9 14801678 14801678 G A FREM1 Silent p.H1222H 0.47 TCGA-FS-A4F8-06 9 27292343 27292343 T G EQTN Intron 0.08 TCGA-FS-A4F8-06 9 35957967 35957967 A G OR2S2 Silent p.N43N 0.15 TCGA-FS-A4F8-06 9 8518175 8518175 C T PTPRD Missense_Mutation p.E406K 0.36 tolerated(0.24) probably_damaging(0.984) TCGA-FS-A4F8-06 X 129263513 129263513 C T AIFM1 3'UTR 0.06 TCGA-FS-A4F8-06 X 140994732 140994732 C T MAGEC1 Silent p.L514L 0.38 TCGA-FS-A4F8-06 X 141290631 141290631 G A MAGEC2 3'UTR 0.36 TCGA-FS-A4F8-06 X 141290979 141290979 G A MAGEC2 Silent p.F265F 0.34 TCGA-FS-A4F8-06 X 142803816 142803816 C T SPANXN2 5'UTR 0.40 TCGA-FS-A4F8-06 X 150844497 150844497 G A PASD1 Missense_Mutation p.G735E 0.25 tolerated_low_confidence(0.06) probably_damaging(0.969) TCGA-FS-A4F8-06 X 152845623 152845623 C T ATP2B3 Missense_Mutation p.P1177L 0.30 tolerated_low_confidence(0.11) benign(0.018) TCGA-FS-A4F8-06 X 30261045 30261045 C T MAGEB4 Missense_Mutation p.P265S 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A4F8-06 X 35993821 35993821 G A CXorf22 Missense_Mutation p.S835N 0.41 tolerated(0.31) benign(0.208) TCGA-FS-A4F8-06 X 37028583 37028583 C T FAM47C Silent p.S700S 0.29 TCGA-FS-A4F8-06 X 45051207 45051207 G A CXorf36 Missense_Mutation p.S96F 0.20 tolerated(0.53) benign(0.009) TCGA-FS-A4F8-06 X 50089666 50089666 C T CCNB3 Missense_Mutation p.R1224C 0.31 tolerated(1) benign(0.001) TCGA-FS-A4F8-06 X 53965569 53965569 G A PHF8 3'UTR 0.39 TCGA-FS-A4F9-06 10 102057344 102057344 C T PKD2L1 Missense_Mutation p.D251N 0.39 tolerated(0.15) benign(0.02) TCGA-FS-A4F9-06 10 103825818 103825818 C T HPS6 Missense_Mutation p.S196F 0.33 deleterious(0) possibly_damaging(0.855) TCGA-FS-A4F9-06 10 103825819 103825819 C T HPS6 Silent p.S196S 0.32 TCGA-FS-A4F9-06 10 106124574 106124574 C T CCDC147 Missense_Mutation p.S175F 0.44 tolerated(0.06) possibly_damaging(0.482) TCGA-FS-A4F9-06 10 117221504 117221504 C T ATRNL1 Missense_Mutation p.R1126C 0.46 deleterious(0) possibly_damaging(0.634) TCGA-FS-A4F9-06 10 11789463 11789463 A G ECHDC3 Missense_Mutation p.I96V 0.41 tolerated(0.05) benign(0.104) TCGA-FS-A4F9-06 10 120801997 120801997 G A EIF3A Missense_Mutation p.A1012V 0.07 tolerated(0.64) benign(0.228) TCGA-FS-A4F9-06 10 124399788 124399788 C T DMBT1 Missense_Mutation p.S2263L 0.52 tolerated(0.05) probably_damaging(0.987) TCGA-FS-A4F9-06 10 127464290 127464290 G C MMP21 Missense_Mutation p.S34W 0.43 deleterious(0) probably_damaging(0.991) TCGA-FS-A4F9-06 10 13214462 13214462 C T MCM10 Missense_Mutation p.R146C 0.33 tolerated(0.2) benign(0) TCGA-FS-A4F9-06 10 135083963 135083963 C T ADAM8 Silent p.G562G 0.41 TCGA-FS-A4F9-06 10 135083964 135083964 C T ADAM8 Missense_Mutation p.G562E 0.42 tolerated(1) benign(0.003) TCGA-FS-A4F9-06 10 24508588 24508588 C T KIAA1217 Missense_Mutation p.P35L 0.42 tolerated(0.61) benign(0) TCGA-FS-A4F9-06 10 26315366 26315366 C T MYO3A Silent p.F286F 0.27 TCGA-FS-A4F9-06 10 26513471 26513471 C T GAD2 Silent p.F205F 0.45 TCGA-FS-A4F9-06 10 28412977 28412977 C T MPP7 Missense_Mutation p.E200K 0.35 deleterious(0) possibly_damaging(0.844) TCGA-FS-A4F9-06 10 32863422 32863422 G A C10ORF68 Intron 0.56 TCGA-FS-A4F9-06 10 33552608 33552608 G A NRP1 Silent p.Y208Y 0.45 TCGA-FS-A4F9-06 10 52390927 52390927 C T RP11-50E11.3 RNA 0.30 TCGA-FS-A4F9-06 10 54074118 54074118 G A DKK1 5'UTR 0.07 TCGA-FS-A4F9-06 10 71017109 71017109 C T HKDC1 Silent p.V653V 0.41 TCGA-FS-A4F9-06 10 74645530 74645530 G A MCU Missense_Mutation p.D336N 0.39 tolerated(0.12) benign(0.168) TCGA-FS-A4F9-06 10 7621822 7621822 G A ITIH5 Silent p.I438I 0.50 TCGA-FS-A4F9-06 10 7621867 7621867 G A ITIH5 Silent p.T423T 0.45 TCGA-FS-A4F9-06 10 7745459 7745459 T A ITIH2 Missense_Mutation p.I21N 0.39 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-FS-A4F9-06 10 96540267 96540267 G A CYP2C19 Missense_Mutation p.D165N 0.33 tolerated(0.08) benign(0.22) TCGA-FS-A4F9-06 10 97791667 97791667 C T CC2D2B Missense_Mutation p.P370S 0.48 tolerated(0.27) probably_damaging(0.956) TCGA-FS-A4F9-06 10 98155087 98155087 G A TLL2 Missense_Mutation p.P528L 0.42 tolerated(0.79) benign(0.003) TCGA-FS-A4F9-06 10 98376456 98376456 G A PIK3AP1 Missense_Mutation p.R652W 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 10 98778392 98778392 C T SLIT1 Missense_Mutation p.E974K 0.42 tolerated(1) benign(0) TCGA-FS-A4F9-06 11 100221563 100221563 G A CNTN5 Missense_Mutation p.G1054E 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 11 110030200 110030200 C T ZC3H12C Missense_Mutation p.S378L 0.60 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 11 113103073 113103073 G A NCAM1 Silent p.L523L 0.46 TCGA-FS-A4F9-06 11 116729357 116729357 G A SIK3 Silent p.L836L 0.38 TCGA-FS-A4F9-06 11 121340767 121340767 A G SORL1 Missense_Mutation p.K113E 0.49 deleterious(0.05) probably_damaging(0.997) TCGA-FS-A4F9-06 11 123900949 123900949 C T OR10G8 Missense_Mutation p.S207L 0.42 tolerated(1) benign(0.021) TCGA-FS-A4F9-06 11 124189890 124189890 G A OR8D2 Silent p.F68F 0.44 TCGA-FS-A4F9-06 11 24927558 24927558 C T LUZP2 Missense_Mutation p.L140F 0.81 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F9-06 11 36422634 36422634 C T PRR5L 5'UTR 0.88 TCGA-FS-A4F9-06 11 4661314 4661314 C T OR51D1 Silent p.F98F 0.11 TCGA-FS-A4F9-06 11 55136178 55136179 TG - OR4A15 Frame_Shift_Del p.V274Gfs*22 0.25 TCGA-FS-A4F9-06 11 55655605 55655605 G A TRIM51 Missense_Mutation p.R202Q 0.36 tolerated(0.57) benign(0.001) TCGA-FS-A4F9-06 11 55873409 55873409 G A OR8H2 Silent p.V297V 0.46 TCGA-FS-A4F9-06 11 57095270 57095270 C G SSRP1 Missense_Mutation p.K566N 0.45 deleterious(0) possibly_damaging(0.875) TCGA-FS-A4F9-06 11 57958817 57958817 G A OR9Q2 Silent p.L285L 0.56 TCGA-FS-A4F9-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4F9-06 11 58206981 58206981 G A OR5B12 Missense_Mutation p.S215F 0.53 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FS-A4F9-06 11 61405167 61405167 G A RPLP0P2 RNA 0.48 TCGA-FS-A4F9-06 11 6239109 6239109 G A FAM160A2 Silent p.C583C 0.07 TCGA-FS-A4F9-06 11 62503008 62503008 C T TTC9C Silent p.L131L 0.40 TCGA-FS-A4F9-06 11 62985192 62985192 G A SLC22A25 Silent p.F174F 0.35 TCGA-FS-A4F9-06 11 63884924 63884924 G A FLRT1 Silent p.T395T 0.46 TCGA-FS-A4F9-06 11 64054478 64054478 C T GPR137 Silent p.S191S 0.38 TCGA-FS-A4F9-06 11 65714785 65714785 G A TSGA10IP RNA 0.38 TCGA-FS-A4F9-06 11 6913594 6913594 G A OR2D2 Silent p.I46I 0.86 TCGA-FS-A4F9-06 11 70333061 70333061 C T SHANK2 Missense_Mutation p.G1114S 0.52 tolerated(0.28) benign(0.063) TCGA-FS-A4F9-06 11 71249595 71249595 C T KRTAP5-8 Missense_Mutation p.S165F 0.39 deleterious(0.01) unknown(0) TCGA-FS-A4F9-06 11 72397152 72397152 G A ARAP1 Missense_Mutation p.P1424S 0.48 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 11 74058272 74058272 G A PGM2L1 Missense_Mutation p.P287L 0.45 deleterious(0.04) probably_damaging(0.943) TCGA-FS-A4F9-06 11 75160974 75160974 G A GDPD5 Nonsense_Mutation p.Q144* 0.38 TCGA-FS-A4F9-06 11 75160976 75160976 G A GDPD5 Missense_Mutation p.A143V 0.38 tolerated(0.08) benign(0.313) TCGA-FS-A4F9-06 11 76371965 76371965 G A LRRC32 Silent p.D224D 0.44 TCGA-FS-A4F9-06 11 7721945 7721945 G A OVCH2 Nonsense_Mutation p.R267* 0.82 TCGA-FS-A4F9-06 11 85407407 85407407 C T SYTL2 Silent p.R1164R 0.45 TCGA-FS-A4F9-06 11 92086197 92086197 G A FAT3 Missense_Mutation p.D307N 0.48 probably_damaging(0.999) TCGA-FS-A4F9-06 12 104126945 104126945 G A STAB2 Silent p.V1815V 0.85 TCGA-FS-A4F9-06 12 109689873 109689873 T C ACACB Missense_Mutation p.I1938T 0.91 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 12 117963012 117963012 G A KSR2 Missense_Mutation p.H622Y 0.59 tolerated(0.12) benign(0.001) TCGA-FS-A4F9-06 12 120534901 120534901 G A RAB35 3'UTR 1.00 TCGA-FS-A4F9-06 12 14613436 14613436 A G ATF7IP Silent p.S722S 0.35 TCGA-FS-A4F9-06 12 25243107 25243107 C T LRMP Silent p.I194I 0.52 TCGA-FS-A4F9-06 12 26775274 26775274 G A ITPR2 Missense_Mutation p.H1063Y 0.06 deleterious(0.03) possibly_damaging(0.806) TCGA-FS-A4F9-06 12 27234245 27234245 G A C12orf71 Silent p.I224I 0.35 TCGA-FS-A4F9-06 12 30867919 30867919 G A CAPRIN2 Missense_Mutation p.S825F 0.41 deleterious(0.01) possibly_damaging(0.724) TCGA-FS-A4F9-06 12 34179203 34179203 C T ALG10 Missense_Mutation p.L259F 0.41 deleterious(0.02) benign(0.012) TCGA-FS-A4F9-06 12 40626073 40626073 C T LRRK2 Intron 0.86 TCGA-FS-A4F9-06 12 48376369 48376369 G A COL2A1 Silent p.P739P 0.89 TCGA-FS-A4F9-06 12 49164630 49164630 G A ADCY6 Silent p.L1059L 0.77 TCGA-FS-A4F9-06 12 6427486 6427486 C T PLEKHG6 Missense_Mutation p.T392I 0.34 tolerated(0.21) benign(0.009) TCGA-FS-A4F9-06 12 7077150 7077151 CT - PHB2 Frame_Shift_Del p.R171Gfs*10 0.20 TCGA-FS-A4F9-06 12 7169068 7169068 C T C1S Intron 0.42 TCGA-FS-A4F9-06 12 73014888 73014888 G A TRHDE Missense_Mutation p.E779K 0.40 tolerated(0.88) benign(0.001) TCGA-FS-A4F9-06 12 7362692 7362692 C T PEX5 Missense_Mutation p.A613V 0.53 tolerated(0.43) benign(0.005) TCGA-FS-A4F9-06 12 77216280 77216280 C T ZDHHC17 Missense_Mutation p.P289L 0.43 tolerated(0.31) benign(0.073) TCGA-FS-A4F9-06 12 81545553 81545553 G A ACSS3 Intron 0.38 TCGA-FS-A4F9-06 12 8197366 8197366 C T FOXJ2 Missense_Mutation p.S210F 0.53 deleterious(0.03) benign(0.259) TCGA-FS-A4F9-06 13 103301837 103301837 G T TPP2 Splice_Site p.X984_splice 0.42 TCGA-FS-A4F9-06 13 107211953 107211953 C G ARGLU1 Missense_Mutation p.V134L 0.60 deleterious(0.02) benign(0.198) TCGA-FS-A4F9-06 13 110835351 110835351 G A COL4A1 Missense_Mutation p.P695L 1.00 benign(0.085) TCGA-FS-A4F9-06 13 22067309 22067309 G A MICU2 3'UTR 0.35 TCGA-FS-A4F9-06 13 23853608 23853608 C T SGCG Nonsense_Mutation p.R166* 0.38 TCGA-FS-A4F9-06 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.34 tolerated(0.11) benign(0.007) TCGA-FS-A4F9-06 13 25367199 25367199 G A RNF17 Missense_Mutation p.E319K 0.38 tolerated(0.07) benign(0.332) TCGA-FS-A4F9-06 13 25399799 25399799 G A RNF17 Missense_Mutation p.E712K 0.42 deleterious(0) benign(0.178) TCGA-FS-A4F9-06 13 32351582 32351582 C T RXFP2 Silent p.F237F 0.74 TCGA-FS-A4F9-06 13 35630184 35630184 G A NBEA Nonsense_Mutation p.W337* 0.46 TCGA-FS-A4F9-06 13 41341131 41341132 CT - MRPS31 Frame_Shift_Del p.S64Cfs*4 0.10 TCGA-FS-A4F9-06 13 72147133 72147133 G A DACH1 Missense_Mutation p.P382S 0.46 probably_damaging(1) TCGA-FS-A4F9-06 13 86369799 86369799 G A SLITRK6 Missense_Mutation p.S282L 0.44 tolerated(0.23) probably_damaging(0.931) TCGA-FS-A4F9-06 13 99338451 99338451 C T SLC15A1 Missense_Mutation p.S643N 0.65 tolerated(0.13) benign(0.003) TCGA-FS-A4F9-06 14 102515815 102515815 G T DYNC1H1 Missense_Mutation p.A4471S 0.83 benign(0.005) TCGA-FS-A4F9-06 14 105349419 105349419 C G CEP170B Missense_Mutation p.R209G 0.38 tolerated(0.07) benign(0.036) TCGA-FS-A4F9-06 14 107013371 107013371 G A IGHV3-49 Silent p.F9F 0.42 TCGA-FS-A4F9-06 14 20345158 20345158 C T OR4K2 Silent p.F244F 0.25 TCGA-FS-A4F9-06 14 20404268 20404268 C T OR4K1 Missense_Mutation p.S148F 0.17 deleterious(0) probably_damaging(0.962) TCGA-FS-A4F9-06 14 22133748 22133748 G A OR4E2 Missense_Mutation p.G151E 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A4F9-06 14 24030397 24030398 AC - AP1G2 Intron 0.34 TCGA-FS-A4F9-06 14 35002670 35002670 G A EAPP Missense_Mutation p.S111F 0.44 deleterious(0) possibly_damaging(0.827) TCGA-FS-A4F9-06 14 38265500 38265500 G A TTC6 Missense_Mutation p.G1265R 0.92 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 14 64727379 64727379 C T ESR2 Missense_Mutation p.R247K 0.92 tolerated(1) benign(0.001) TCGA-FS-A4F9-06 14 71500648 71500648 C A PCNX Missense_Mutation p.F1223L 0.83 tolerated(0.95) benign(0.001) TCGA-FS-A4F9-06 14 75416246 75416246 G A PGF Silent p.F43F 0.89 TCGA-FS-A4F9-06 14 89068387 89068387 G A ZC3H14 Missense_Mutation p.D492N 0.89 tolerated(0.11) possibly_damaging(0.828) TCGA-FS-A4F9-06 14 92441597 92441597 G A TRIP11 Silent p.F1792F 0.82 TCGA-FS-A4F9-06 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.91 TCGA-FS-A4F9-06 15 22709178 22709178 C T AC116165.1 5'Flank 0.21 TCGA-FS-A4F9-06 15 25223060 25223060 C T SNRPN Missense_Mutation p.P186S 0.74 tolerated(0.15) unknown(0) TCGA-FS-A4F9-06 15 25339020 25339020 C T SNORD116-23 3'Flank 0.28 TCGA-FS-A4F9-06 15 33357275 33357275 G A FMN1 Missense_Mutation p.P459S 0.40 tolerated(0.08) unknown(0) TCGA-FS-A4F9-06 15 34543178 34543178 A G SLC12A6 Silent p.L472L 0.47 TCGA-FS-A4F9-06 15 39885334 39885334 C A THBS1 Silent p.P967P 0.52 TCGA-FS-A4F9-06 15 40675047 40675047 C T KNSTRN Missense_Mutation p.P4L 0.40 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-FS-A4F9-06 15 41146652 41146653 AC - SPINT1 Frame_Shift_Del p.D349Efs*6 0.31 TCGA-FS-A4F9-06 15 43028089 43028090 TC - CDAN1 Frame_Shift_Del p.E252Dfs*8 0.37 TCGA-FS-A4F9-06 15 48522659 48522659 C T SLC12A1 Missense_Mutation p.L312F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F9-06 15 50168720 50168720 C T ATP8B4 Missense_Mutation p.D928N 0.53 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F9-06 15 67636459 67636459 G A IQCH Silent p.Q189Q 0.33 TCGA-FS-A4F9-06 15 90245106 90245106 C T WDR93 Silent p.L43L 0.50 TCGA-FS-A4F9-06 16 1453328 1453328 C T UNKL Missense_Mutation p.R102Q 0.50 deleterious(0) probably_damaging(0.938) TCGA-FS-A4F9-06 16 19475128 19475128 G A TMC5 Missense_Mutation p.E423K 0.47 deleterious(0.01) possibly_damaging(0.589) TCGA-FS-A4F9-06 16 20370503 20370503 C T PDILT 3'UTR 0.45 TCGA-FS-A4F9-06 16 20566706 20566706 C T ACSM2B Missense_Mutation p.D161N 0.47 deleterious(0.03) possibly_damaging(0.788) TCGA-FS-A4F9-06 16 2239441 2239441 G A CASKIN1 Silent p.A123A 0.24 TCGA-FS-A4F9-06 16 23634434 23634434 G A PALB2 Missense_Mutation p.S951F 0.26 deleterious(0) probably_damaging(0.946) TCGA-FS-A4F9-06 16 24583226 24583226 G A RBBP6 Silent p.K1613K 0.44 TCGA-FS-A4F9-06 16 27456005 27456005 G A IL21R Nonsense_Mutation p.W217* 0.44 TCGA-FS-A4F9-06 16 46744675 46744675 C T MYLK3 Missense_Mutation p.G714E 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 16 53679727 53679727 G A RPGRIP1L Silent p.P831P 0.36 TCGA-FS-A4F9-06 16 55886935 55886935 G A CES5A Silent p.I406I 0.41 TCGA-FS-A4F9-06 16 67964690 67964692 ACA - CTRL In_Frame_Del p.V86del 0.43 TCGA-FS-A4F9-06 16 70891709 70891709 G A HYDIN Missense_Mutation p.P4065L 0.49 probably_damaging(0.958) TCGA-FS-A4F9-06 16 70955078 70955078 C T HYDIN Missense_Mutation p.E2401K 0.39 probably_damaging(0.956) TCGA-FS-A4F9-06 16 71318700 71318701 AT - CMTR2 Frame_Shift_Del p.I375Ffs*2 0.37 TCGA-FS-A4F9-06 16 77232127 77232127 T C MON1B Silent p.R522R 0.40 TCGA-FS-A4F9-06 16 78064586 78064586 G C CLEC3A Missense_Mutation p.A157P 0.39 tolerated(0.91) benign(0.01) TCGA-FS-A4F9-06 16 81249962 81249962 A T PKD1L2 Missense_Mutation p.H117Q 0.39 tolerated(0.57) benign(0.002) TCGA-FS-A4F9-06 16 841257 841257 C T CHTF18 Missense_Mutation p.P331S 0.27 tolerated(0.16) benign(0.293) TCGA-FS-A4F9-06 16 84488463 84488463 G A ATP2C2 Missense_Mutation p.D674N 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 16 87445888 87445888 C T ZCCHC14 Silent p.L676L 0.45 TCGA-FS-A4F9-06 16 89351517 89351517 G A ANKRD11 Missense_Mutation p.S478F 0.36 probably_damaging(0.962) TCGA-FS-A4F9-06 16 9892263 9892263 C T GRIN2A Missense_Mutation p.E743K 0.38 deleterious(0.02) benign(0.389) TCGA-FS-A4F9-06 17 10304276 10304276 C T MYH8 Silent p.K1085K 0.77 TCGA-FS-A4F9-06 17 10363347 10363347 G A MYH4 Silent p.I446I 0.88 TCGA-FS-A4F9-06 17 10363534 10363534 G A MYH4 Nonsense_Mutation p.Q418* 0.81 TCGA-FS-A4F9-06 17 19091371 19091371 A G SNORD3A RNA 0.17 TCGA-FS-A4F9-06 17 3324699 3324699 G A OR3A3 Missense_Mutation p.D280N 0.78 deleterious(0.01) benign(0.417) TCGA-FS-A4F9-06 17 39412102 39412102 C T KRTAP9-9 Silent p.F155F 0.83 TCGA-FS-A4F9-06 17 40997726 40997727 GT - AOC2 Frame_Shift_Del p.V363Ifs*18 0.44 TCGA-FS-A4F9-06 17 41960402 41960402 C T MPP2 Missense_Mutation p.D108N 0.74 deleterious(0.01) possibly_damaging(0.825) TCGA-FS-A4F9-06 17 4891810 4891812 CCT - INCA1 In_Frame_Del p.E200del 0.78 TCGA-FS-A4F9-06 17 56082949 56082949 A G SRSF1 Missense_Mutation p.Y189H 0.93 deleterious(0.01) benign(0.06) TCGA-FS-A4F9-06 17 61493003 61493003 C T TANC2 Missense_Mutation p.L1295F 0.80 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4F9-06 17 66526578 66526581 ACTG - PRKAR1A Frame_Shift_Del p.V381Efs*59 0.83 TCGA-FS-A4F9-06 17 7366262 7366262 C T ZBTB4 Missense_Mutation p.G680E 0.86 possibly_damaging(0.829) TCGA-FS-A4F9-06 17 74011656 74011656 C T EVPL Silent p.K588K 1.00 TCGA-FS-A4F9-06 17 7577112 7577113 CA - TP53 Frame_Shift_Del p.A276Lfs*29 0.41 TCGA-FS-A4F9-06 17 76399923 76399923 C T PGS1 Silent p.T385T 0.83 TCGA-FS-A4F9-06 17 80525955 80525955 C T FOXK2 Missense_Mutation p.P214S 0.92 deleterious(0.02) benign(0.209) TCGA-FS-A4F9-06 17 9538850 9538850 G A WDR16 Silent p.G483G 0.81 TCGA-FS-A4F9-06 18 13092489 13092489 C T CEP192 Missense_Mutation p.L2073F 0.08 tolerated(0.35) benign(0.126) TCGA-FS-A4F9-06 18 13387614 13387614 G A LDLRAD4 5'UTR 0.40 TCGA-FS-A4F9-06 18 28993112 28993112 G A DSG4 Missense_Mutation p.E912K 0.38 tolerated(0.57) possibly_damaging(0.839) TCGA-FS-A4F9-06 18 29848706 29848706 G A GAREM Missense_Mutation p.P587S 0.05 tolerated(0.57) benign(0.356) TCGA-FS-A4F9-06 18 40503683 40503683 C T RIT2 Missense_Mutation p.G94S 0.45 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 18 43206999 43206999 C T SLC14A2 Silent p.L136L 0.48 TCGA-FS-A4F9-06 18 50936966 50936966 C T DCC Missense_Mutation p.S1027L 0.43 deleterious(0.01) benign(0.179) TCGA-FS-A4F9-06 18 56246910 56246910 G A ALPK2 Silent p.F366F 0.43 TCGA-FS-A4F9-06 18 67531570 67531570 T G CD226 Silent p.R331R 0.43 TCGA-FS-A4F9-06 18 74672778 74672778 A T ZNF236 Nonsense_Mutation p.K1794* 0.89 TCGA-FS-A4F9-06 18 76752615 76752615 G A SALL3 Silent p.Q208Q 0.50 TCGA-FS-A4F9-06 19 10940894 10940894 C T DNM2 Missense_Mutation p.P795S 0.44 tolerated_low_confidence(0.13) benign(0.154) TCGA-FS-A4F9-06 19 13876864 13876864 C T MRI1 Silent p.A156A 0.26 TCGA-FS-A4F9-06 19 14507996 14507996 C T CD97 Missense_Mutation p.P196S 0.44 tolerated(0.29) benign(0.363) TCGA-FS-A4F9-06 19 14865891 14865891 G A EMR2 Nonsense_Mutation p.Q489* 0.43 TCGA-FS-A4F9-06 19 15853149 15853149 C T OR10H3 Missense_Mutation p.S316F 0.44 deleterious(0) possibly_damaging(0.766) TCGA-FS-A4F9-06 19 16034811 16034811 C T CYP4F11 Silent p.T243T 0.46 TCGA-FS-A4F9-06 19 1612283 1612283 G A TCF3 Intron 0.41 TCGA-FS-A4F9-06 19 1625578 1625578 G A TCF3 Silent p.L166L 0.38 TCGA-FS-A4F9-06 19 17895689 17895689 G T FCHO1 Silent p.V794V 0.35 TCGA-FS-A4F9-06 19 19260221 19260221 C T MEF2B Silent p.R24R 0.05 TCGA-FS-A4F9-06 19 2276361 2276361 C T C19orf35 Nonsense_Mutation p.W247* 0.40 TCGA-FS-A4F9-06 19 31768690 31768690 C T TSHZ3 Missense_Mutation p.S670N 0.46 tolerated(0.23) benign(0.004) TCGA-FS-A4F9-06 19 32843887 32843887 T C ZNF507 Silent p.L51L 0.49 TCGA-FS-A4F9-06 19 33608898 33608898 C T GPATCH1 Silent p.F788F 0.45 TCGA-FS-A4F9-06 19 35791052 35791052 C T MAG Missense_Mutation p.P239S 0.27 tolerated(0.68) benign(0.013) TCGA-FS-A4F9-06 19 36233529 36233529 G A U2AF1L4 Silent p.I193I 0.45 TCGA-FS-A4F9-06 19 36365505 36365505 G A APLP1 Missense_Mutation p.D386N 0.48 tolerated(0.16) probably_damaging(0.992) TCGA-FS-A4F9-06 19 37005633 37005634 CA - ZNF260 Frame_Shift_Del p.C169Wfs*12 0.30 TCGA-FS-A4F9-06 19 3821400 3821400 C T ZFR2 Silent p.R523R 0.36 TCGA-FS-A4F9-06 19 38573548 38573548 C T SIPA1L3 Missense_Mutation p.S448F 0.38 deleterious(0.01) benign(0.238) TCGA-FS-A4F9-06 19 4054105 4054107 TCT - ZBTB7A In_Frame_Del p.K375del 0.40 TCGA-FS-A4F9-06 19 41388024 41388024 C T CYP2A7 Missense_Mutation p.G31E 0.54 tolerated(0.07) benign(0.029) TCGA-FS-A4F9-06 19 41754497 41754497 G A AXL Missense_Mutation p.G539E 0.48 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 19 43699191 43699191 C T PSG4 Missense_Mutation p.R315Q 0.41 tolerated(0.17) possibly_damaging(0.553) TCGA-FS-A4F9-06 19 44111830 44111830 G A ZNF428 Missense_Mutation p.S169F 0.32 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-FS-A4F9-06 19 44679960 44679961 AG - ZNF226 Frame_Shift_Del p.R183Ifs*12 0.26 TCGA-FS-A4F9-06 19 46338455 46338455 G A SYMPK Missense_Mutation p.A425V 0.44 tolerated(0.27) benign(0) TCGA-FS-A4F9-06 19 46543783 46543783 T G IGFL4 Silent p.G21G 0.44 TCGA-FS-A4F9-06 19 4683502 4683502 G A DPP9 Missense_Mutation p.P773L 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 19 48018142 48018142 C T NAPA Missense_Mutation p.R19H 0.35 deleterious(0) possibly_damaging(0.832) TCGA-FS-A4F9-06 19 48220025 48220025 C G EHD2 Missense_Mutation p.D52E 0.41 tolerated(0.12) benign(0.198) TCGA-FS-A4F9-06 19 49232749 49232749 G A RASIP1 Silent p.T426T 0.38 TCGA-FS-A4F9-06 19 49232750 49232750 G A RASIP1 Missense_Mutation p.T426I 0.38 tolerated(0.36) possibly_damaging(0.9) TCGA-FS-A4F9-06 19 51189601 51189601 C T SHANK1 Missense_Mutation p.E824K 0.49 possibly_damaging(0.651) TCGA-FS-A4F9-06 19 52132701 52132701 G A SIGLEC5 Missense_Mutation p.P204S 0.43 deleterious(0.01) possibly_damaging(0.659) TCGA-FS-A4F9-06 19 53473286 53473286 G A ZNF702P RNA 0.47 TCGA-FS-A4F9-06 19 54416194 54416194 G A CACNG7 Missense_Mutation p.E37K 0.36 tolerated(0.1) benign(0.283) TCGA-FS-A4F9-06 19 55147937 55147937 C T LILRB1 Intron 0.46 TCGA-FS-A4F9-06 19 55713462 55713462 C T PTPRH Missense_Mutation p.G372E 0.39 possibly_damaging(0.737) TCGA-FS-A4F9-06 19 57089701 57089701 C T ZNF470 Missense_Mutation p.S635F 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-FS-A4F9-06 19 57325238 57325238 C T PEG3 Silent p.L1524L 0.38 TCGA-FS-A4F9-06 19 58563908 58563908 G A ZSCAN1 Silent p.E172E 0.33 TCGA-FS-A4F9-06 19 6820787 6820787 C T VAV1 Silent p.L93L 0.39 TCGA-FS-A4F9-06 19 7687732 7687732 C T XAB2 Silent p.V429V 0.41 TCGA-FS-A4F9-06 19 9058952 9058952 C T MUC16 Silent p.E9498E 0.41 TCGA-FS-A4F9-06 19 9074280 9074280 G A MUC16 Missense_Mutation p.T4389I 0.45 unknown(0) TCGA-FS-A4F9-06 19 9077007 9077007 C T MUC16 Missense_Mutation p.G3480E 0.29 unknown(0) TCGA-FS-A4F9-06 19 9362181 9362181 G A OR7E24 Missense_Mutation p.M154I 0.34 deleterious(0.03) benign(0.178) TCGA-FS-A4F9-06 19 9801781 9801781 C T ZNF812 Missense_Mutation p.G133E 0.51 tolerated(0.2) probably_damaging(0.953) TCGA-FS-A4F9-06 1 108735237 108735237 A G SLC25A24 Intron 0.42 TCGA-FS-A4F9-06 1 111439345 111439345 G A CD53 Missense_Mutation p.R165Q 0.34 tolerated(0.67) benign(0) TCGA-FS-A4F9-06 1 111781451 111781451 C T CHI3L2 Missense_Mutation p.S272F 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 1 111824267 111824267 C T CHIAP2 RNA 0.34 TCGA-FS-A4F9-06 1 112525151 112525151 C T KCND3 Silent p.L66L 0.50 TCGA-FS-A4F9-06 1 11291001 11291001 G A MTOR Silent p.S920S 0.38 TCGA-FS-A4F9-06 1 112998721 112998721 C T CTTNBP2NL Silent p.L203L 0.41 TCGA-FS-A4F9-06 1 114437848 114437848 C T AP4B1 Missense_Mutation p.D687N 0.49 tolerated(0.1) possibly_damaging(0.809) TCGA-FS-A4F9-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.45 deleterious(0.01) benign(0.045) TCGA-FS-A4F9-06 1 12856020 12856020 C T PRAMEF1 Missense_Mutation p.R434W 0.12 deleterious(0.03) benign(0.005) TCGA-FS-A4F9-06 1 142803770 142803770 C T RP11-423O2.5 RNA 0.29 TCGA-FS-A4F9-06 1 145474476 145474476 C T ANKRD34A Missense_Mutation p.S383F 0.32 deleterious(0.02) probably_damaging(0.962) TCGA-FS-A4F9-06 1 147092545 147092545 C T BCL9 Missense_Mutation p.P862S 0.49 tolerated(0.07) probably_damaging(0.986) TCGA-FS-A4F9-06 1 151779874 151779874 G A RORC 3'UTR 0.74 TCGA-FS-A4F9-06 1 152325685 152325685 C T FLG2 Missense_Mutation p.G1526E 0.39 benign(0.178) TCGA-FS-A4F9-06 1 152732122 152732122 G A KPRP Missense_Mutation p.G20S 0.38 tolerated(0.06) possibly_damaging(0.799) TCGA-FS-A4F9-06 1 153991451 153991451 C T NUP210L Missense_Mutation p.M1537I 0.37 deleterious(0.05) benign(0.01) TCGA-FS-A4F9-06 1 154295826 154295826 C T AQP10 Silent p.F160F 0.39 TCGA-FS-A4F9-06 1 154561920 154561920 C T ADAR Missense_Mutation p.G896E 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 1 154561921 154561921 C T ADAR Missense_Mutation p.G896R 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 1 155025185 155025185 C T ADAM15 Missense_Mutation p.P40S 0.31 tolerated(0.43) benign(0.009) TCGA-FS-A4F9-06 1 155025186 155025186 C T ADAM15 Missense_Mutation p.P40L 0.31 tolerated(0.69) benign(0.002) TCGA-FS-A4F9-06 1 155226534 155226534 G A SCAMP3 Silent p.S276S 0.34 TCGA-FS-A4F9-06 1 1560740 1560740 C T MIB2 Silent p.L381L 0.44 TCGA-FS-A4F9-06 1 156618614 156618614 C T BCAN Missense_Mutation p.P342S 0.38 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F9-06 1 157514862 157514862 G A FCRL5 Silent p.I106I 0.50 TCGA-FS-A4F9-06 1 158669557 158669557 T C OR6K2 Missense_Mutation p.K296E 0.42 deleterious(0) possibly_damaging(0.456) TCGA-FS-A4F9-06 1 158819122 158819122 G A MNDA 3'UTR 0.44 TCGA-FS-A4F9-06 1 159284042 159284042 G A OR10J3 Silent p.I136I 0.58 TCGA-FS-A4F9-06 1 159779256 159779256 G A FCRL6 Missense_Mutation p.M223I 0.49 tolerated(0.22) benign(0.049) TCGA-FS-A4F9-06 1 161642806 161642806 G A FCGR2B Missense_Mutation p.G145R 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 1 16583246 16583246 G A FBXO42 Missense_Mutation p.P171S 0.42 deleterious(0) probably_damaging(0.911) TCGA-FS-A4F9-06 1 167815304 167815304 G A ADCY10 Missense_Mutation p.L879F 0.46 tolerated(0.1) benign(0.302) TCGA-FS-A4F9-06 1 174652663 174652663 T C RABGAP1L Missense_Mutation p.Y610H 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 1 177226461 177226461 G A BRINP2 Missense_Mutation p.D204N 0.58 deleterious(0.02) possibly_damaging(0.617) TCGA-FS-A4F9-06 1 179820240 179820240 C T TOR1AIP2 Missense_Mutation p.G98E 0.41 tolerated_low_confidence(1) benign(0) TCGA-FS-A4F9-06 1 197390533 197390533 C T CRB1 Silent p.F525F 0.40 TCGA-FS-A4F9-06 1 197407909 197407909 G A CRB1 Intron 0.42 TCGA-FS-A4F9-06 1 211452577 211452577 C T RCOR3 Intron 0.44 TCGA-FS-A4F9-06 1 214171138 214171138 C T PROX1 Silent p.P420P 0.39 TCGA-FS-A4F9-06 1 223400943 223400943 G A SUSD4 Missense_Mutation p.P352S 0.38 tolerated(0.2) possibly_damaging(0.512) TCGA-FS-A4F9-06 1 229786999 229786999 C T URB2 Silent p.I1389I 0.44 TCGA-FS-A4F9-06 1 233160982 233160982 G A PCNXL2 Silent p.I1505I 0.47 TCGA-FS-A4F9-06 1 248112339 248112339 C T OR2L8 Silent p.F60F 0.43 TCGA-FS-A4F9-06 1 248458129 248458129 C T OR2T12 Missense_Mutation p.G251E 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 1 248685704 248685704 G A OR2G6 Missense_Mutation p.G253R 0.38 deleterious(0) probably_damaging(0.996) TCGA-FS-A4F9-06 1 28864525 28864525 C T RCC1 3'UTR 0.33 TCGA-FS-A4F9-06 1 29189433 29189433 G A OPRD1 Missense_Mutation p.D253N 0.40 deleterious(0.02) probably_damaging(0.983) TCGA-FS-A4F9-06 1 32259408 32259408 G A SPOCD1 Missense_Mutation p.P825L 0.38 tolerated(0.08) benign(0.017) TCGA-FS-A4F9-06 1 32266186 32266186 C T SPOCD1 Silent p.G486G 0.62 TCGA-FS-A4F9-06 1 33402651 33402651 G A RNF19B Missense_Mutation p.P652L 0.46 deleterious_low_confidence(0.02) benign(0) TCGA-FS-A4F9-06 1 33402652 33402652 G A RNF19B Missense_Mutation p.P652S 0.47 tolerated_low_confidence(0.11) benign(0.01) TCGA-FS-A4F9-06 1 35223722 35223722 C T GJB5 Missense_Mutation p.P264L 0.49 deleterious(0.02) possibly_damaging(0.748) TCGA-FS-A4F9-06 1 35579104 35579104 T A ZMYM1 Missense_Mutation p.I558N 0.27 deleterious(0) probably_damaging(0.975) TCGA-FS-A4F9-06 1 3640009 3640009 C T TP73 Silent p.V236V 0.37 TCGA-FS-A4F9-06 1 3786330 3786330 C T DFFB Silent p.F224F 0.44 TCGA-FS-A4F9-06 1 41976878 41976878 G A HIVEP3 Silent p.S2155S 0.47 TCGA-FS-A4F9-06 1 43652459 43652459 G A WDR65 Missense_Mutation p.E351K 0.39 deleterious(0.01) possibly_damaging(0.828) TCGA-FS-A4F9-06 1 43880800 43880800 C T SZT2 Silent p.F182F 0.40 TCGA-FS-A4F9-06 1 44463367 44463367 G A SLC6A9 Silent p.A657A 0.43 TCGA-FS-A4F9-06 1 45798111 45798111 C T MUTYH Missense_Mutation p.R244Q 0.29 deleterious(0.02) benign(0.155) TCGA-FS-A4F9-06 1 48821391 48821391 C T SPATA6 Missense_Mutation p.R382Q 0.19 deleterious(0) probably_damaging(0.975) TCGA-FS-A4F9-06 1 54474516 54474516 G A LDLRAD1 3'UTR 0.51 TCGA-FS-A4F9-06 1 55076196 55076196 C T FAM151A Missense_Mutation p.G325R 0.41 deleterious(0.03) probably_damaging(1) TCGA-FS-A4F9-06 1 57189301 57189301 C T C1orf168 Missense_Mutation p.R645K 0.40 tolerated(0.41) benign(0.084) TCGA-FS-A4F9-06 1 60505760 60505760 G A C1orf87 Silent p.S192S 0.41 TCGA-FS-A4F9-06 1 74506957 74506957 T C LRRIQ3 Missense_Mutation p.K553R 0.42 tolerated(0.15) benign(0.003) TCGA-FS-A4F9-06 1 85418151 85418153 ATG - MCOLN2 In_Frame_Del p.S209del 0.28 TCGA-FS-A4F9-06 1 87209047 87209047 G C SH3GLB1 3'Flank 0.70 TCGA-FS-A4F9-06 1 89618092 89618092 C T GBP7 Missense_Mutation p.E162K 0.51 tolerated(0.21) benign(0.314) TCGA-FS-A4F9-06 1 89652762 89652762 G A GBP4 Silent p.F478F 0.41 TCGA-FS-A4F9-06 1 9009479 9009479 C T CA6 Silent p.P79P 0.50 TCGA-FS-A4F9-06 1 93299169 93299170 - AAAT RPL5 Frame_Shift_Ins p.Y49* 0.47 TCGA-FS-A4F9-06 1 94505629 94505629 C T ABCA4 Missense_Mutation p.D1193N 0.47 tolerated(0.24) benign(0.001) TCGA-FS-A4F9-06 20 11903859 11903859 C T BTBD3 Missense_Mutation p.P372S 0.53 tolerated(0.47) benign(0.016) TCGA-FS-A4F9-06 20 17489585 17489585 G A BFSP1 Silent p.G228G 0.40 TCGA-FS-A4F9-06 20 23472436 23472436 C T CST8 Silent p.N44N 0.42 TCGA-FS-A4F9-06 20 3090996 3090996 G A UBOX5 Intron 0.61 TCGA-FS-A4F9-06 20 3673741 3673741 C T SIGLEC1 Silent p.E1182E 0.54 TCGA-FS-A4F9-06 20 3675435 3675435 G A SIGLEC1 Missense_Mutation p.S940L 0.42 tolerated(0.29) benign(0.032) TCGA-FS-A4F9-06 20 42679998 42679998 G A TOX2 Missense_Mutation p.G155E 0.44 tolerated(1) probably_damaging(0.999) TCGA-FS-A4F9-06 20 42826004 42826004 G A OSER1 Silent p.S189S 0.43 TCGA-FS-A4F9-06 20 43804653 43804653 C T PI3 Silent p.P77P 0.33 TCGA-FS-A4F9-06 20 44351017 44351017 C T SPINT4 Missense_Mutation p.A4V 0.46 tolerated(0.16) possibly_damaging(0.457) TCGA-FS-A4F9-06 20 50238709 50238709 A G ATP9A Silent p.V673V 0.38 TCGA-FS-A4F9-06 20 50408016 50408016 G A SALL4 Missense_Mutation p.P336S 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A4F9-06 20 55027835 55027835 G A CASS4 Missense_Mutation p.E535K 0.38 deleterious(0.02) benign(0.271) TCGA-FS-A4F9-06 20 57768768 57768768 G A ZNF831 Silent p.G898G 0.36 TCGA-FS-A4F9-06 20 58491601 58491601 G A SYCP2 Silent p.F151F 0.47 TCGA-FS-A4F9-06 20 6068451 6068451 C T FERMT1 Missense_Mutation p.M448I 0.41 tolerated(0.06) benign(0.236) TCGA-FS-A4F9-06 20 62595733 62595734 TC - ZNF512B Frame_Shift_Del p.K425Nfs*25 0.33 TCGA-FS-A4F9-06 20 9546763 9546763 G A PAK7 Missense_Mutation p.S420F 0.48 deleterious(0.01) benign(0.355) TCGA-FS-A4F9-06 21 15747975 15747975 G A HSPA13 Missense_Mutation p.S249F 0.42 deleterious(0) possibly_damaging(0.76) TCGA-FS-A4F9-06 21 19651322 19651322 C T TMPRSS15 Missense_Mutation p.R908K 0.38 tolerated(0.94) benign(0.023) TCGA-FS-A4F9-06 21 19666682 19666682 G A TMPRSS15 Silent p.P797P 0.41 TCGA-FS-A4F9-06 21 38098544 38098544 C T SIM2 Missense_Mutation p.T223I 0.46 tolerated(0.09) benign(0.443) TCGA-FS-A4F9-06 21 38862574 38862574 C T DYRK1A Silent p.F254F 0.44 TCGA-FS-A4F9-06 21 40778455 40778455 C T LCA5L Missense_Mutation p.E456K 0.39 tolerated(0.17) possibly_damaging(0.613) TCGA-FS-A4F9-06 21 41173355 41173355 C T IGSF5 3'UTR 0.50 TCGA-FS-A4F9-06 21 42647392 42647392 C T BACE2 Silent p.P466P 0.46 TCGA-FS-A4F9-06 21 42821111 42821111 C T MX1 Missense_Mutation p.R441C 0.45 deleterious(0.01) possibly_damaging(0.763) TCGA-FS-A4F9-06 22 17309905 17309905 T C HSFY1P1 RNA 0.85 TCGA-FS-A4F9-06 22 21350144 21350144 C T LZTR1 Silent p.I684I 0.48 TCGA-FS-A4F9-06 22 22277365 22277365 G A PPM1F 3'UTR 0.44 TCGA-FS-A4F9-06 22 24472149 24472149 C T CABIN1 Silent p.S888S 0.33 TCGA-FS-A4F9-06 22 37693707 37693707 A T CYTH4 Missense_Mutation p.T113S 0.39 deleterious(0.02) benign(0.005) TCGA-FS-A4F9-06 22 37769984 37769984 C T ELFN2 Missense_Mutation p.A531T 0.41 tolerated(0.19) benign(0.186) TCGA-FS-A4F9-06 22 40069005 40069005 C T CACNA1I Silent p.T1567T 0.38 TCGA-FS-A4F9-06 22 40815382 40815382 C T MKL1 Missense_Mutation p.E354K 0.37 deleterious(0) benign(0.226) TCGA-FS-A4F9-06 22 41752784 41752784 C T ZC3H7B Missense_Mutation p.P885S 0.39 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 22 41969756 41969756 G A CSDC2 Missense_Mutation p.E92K 0.45 tolerated(0.24) possibly_damaging(0.508) TCGA-FS-A4F9-06 22 43088838 43088838 G A A4GALT 3'UTR 0.41 TCGA-FS-A4F9-06 22 44892643 44892643 G A LDOC1L 3'UTR 0.41 TCGA-FS-A4F9-06 22 46860045 46860045 G A CELSR1 Nonsense_Mutation p.Q1248* 0.53 TCGA-FS-A4F9-06 22 50898062 50898062 G A SBF1 Silent p.V1175V 0.54 TCGA-FS-A4F9-06 22 50960172 50960172 A G NCAPH2 Missense_Mutation p.R335G 0.44 deleterious(0) possibly_damaging(0.69) TCGA-FS-A4F9-06 2 102504379 102504380 GA - MAP4K4 Frame_Shift_Del p.E1160Dfs*48 0.19 TCGA-FS-A4F9-06 2 105889341 105889341 G A TGFBRAP1 Missense_Mutation p.S648F 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 2 107459715 107459715 C T ST6GAL2 Missense_Mutation p.G240E 0.85 possibly_damaging(0.901) TCGA-FS-A4F9-06 2 108489172 108489172 G A RGPD4 Missense_Mutation p.G1571E 0.47 deleterious(0.03) probably_damaging(1) TCGA-FS-A4F9-06 2 112620143 112620143 G A ANAPC1 Missense_Mutation p.S362F 0.33 tolerated(0.09) possibly_damaging(0.901) TCGA-FS-A4F9-06 2 11809657 11809657 C T NTSR2 Missense_Mutation p.R200H 0.17 tolerated(0.17) benign(0.027) TCGA-FS-A4F9-06 2 119699814 119699814 G A MARCO 5'UTR 0.56 TCGA-FS-A4F9-06 2 119699815 119699815 G A MARCO 5'UTR 0.56 TCGA-FS-A4F9-06 2 136389537 136389538 TC - R3HDM1 Frame_Shift_Del p.S222Cfs*7 0.25 TCGA-FS-A4F9-06 2 139429169 139429169 G A NXPH2 Missense_Mutation p.P40S 0.49 tolerated_low_confidence(0.34) benign(0.024) TCGA-FS-A4F9-06 2 162719515 162719515 C T SLC4A10 Missense_Mutation p.R237C 0.31 deleterious(0.02) probably_damaging(0.97) TCGA-FS-A4F9-06 2 166234156 166234156 G A SCN2A Missense_Mutation p.R1435Q 0.48 deleterious(0.04) probably_damaging(0.955) TCGA-FS-A4F9-06 2 166868757 166868757 C T SCN1A Silent p.T1247T 0.49 TCGA-FS-A4F9-06 2 167297944 167297944 G A SCN7A Missense_Mutation p.P707S 0.50 tolerated(0.23) benign(0.009) TCGA-FS-A4F9-06 2 168101750 168101750 C T XIRP2 Missense_Mutation p.S1283F 0.33 probably_damaging(1) TCGA-FS-A4F9-06 2 168102351 168102351 G A XIRP2 Silent p.Q1483Q 0.39 TCGA-FS-A4F9-06 2 168105143 168105143 G A XIRP2 Missense_Mutation p.G2414E 0.43 benign(0.258) TCGA-FS-A4F9-06 2 168725348 168725348 G A B3GALT1 5'Flank 0.44 TCGA-FS-A4F9-06 2 172935784 172935784 T C METAP1D Silent p.I230I 0.48 TCGA-FS-A4F9-06 2 176996093 176996094 CT - HOXD8 Frame_Shift_Del p.L210Rfs*9 0.29 TCGA-FS-A4F9-06 2 179259069 179259069 C T OSBPL6 Missense_Mutation p.A893V 0.44 deleterious(0) possibly_damaging(0.906) TCGA-FS-A4F9-06 2 179583644 179583644 G A TTN Missense_Mutation p.L8095F 0.58 TCGA-FS-A4F9-06 2 179586714 179586714 C T TTN Missense_Mutation p.G7559E 0.42 TCGA-FS-A4F9-06 2 179593051 179593051 C T TTN Missense_Mutation p.M6500I 0.38 TCGA-FS-A4F9-06 2 179597691 179597691 C T TTN Silent p.R5404R 0.36 TCGA-FS-A4F9-06 2 179611813 179611813 C T TTN Intron 0.50 TCGA-FS-A4F9-06 2 179701852 179701852 G A CCDC141 Missense_Mutation p.S1365F 0.43 tolerated(0.26) benign(0.029) TCGA-FS-A4F9-06 2 189870933 189870933 G A COL3A1 Missense_Mutation p.G1014E 0.53 probably_damaging(1) TCGA-FS-A4F9-06 2 190719754 190719754 C T PMS1 Missense_Mutation p.R586C 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 2 197298087 197298087 A T HECW2 Missense_Mutation p.Y21N 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.674) TCGA-FS-A4F9-06 2 206480522 206480522 G A PARD3B Missense_Mutation p.M1139I 0.37 deleterious(0.01) possibly_damaging(0.491) TCGA-FS-A4F9-06 2 213872554 213872554 C T IKZF2 Missense_Mutation p.E371K 0.49 tolerated(0.09) probably_damaging(0.991) TCGA-FS-A4F9-06 2 232658990 232658990 C T COPS7B Missense_Mutation p.P86S 0.35 deleterious(0.03) possibly_damaging(0.492) TCGA-FS-A4F9-06 2 233410392 233410392 G A CHRNG Missense_Mutation p.G507E 0.41 deleterious(0) probably_damaging(0.993) TCGA-FS-A4F9-06 2 241631368 241631368 C T AQP12A Missense_Mutation p.A13V 0.19 tolerated(0.23) benign(0.074) TCGA-FS-A4F9-06 2 242289490 242289490 C T SEPT2 Silent p.L329L 0.38 TCGA-FS-A4F9-06 2 29436869 29436869 C T ALK Missense_Mutation p.E1242K 0.34 deleterious(0) probably_damaging(0.986) TCGA-FS-A4F9-06 2 37347186 37347187 TT - EIF2AK2 Frame_Shift_Del p.K388Sfs*8 0.30 TCGA-FS-A4F9-06 2 54483382 54483382 C T TSPYL6 5'UTR 0.27 TCGA-FS-A4F9-06 2 54785944 54785944 C T SPTBN1 Intron 0.45 TCGA-FS-A4F9-06 2 61324857 61324857 C T KIAA1841 Missense_Mutation p.S412L 0.44 deleterious(0.01) benign(0.407) TCGA-FS-A4F9-06 2 669616 669617 TC - TMEM18 Frame_Shift_Del p.R129Kfs*112 0.25 TCGA-FS-A4F9-06 2 86316997 86316997 T C POLR1A Missense_Mutation p.Q163R 0.47 tolerated(0.56) benign(0.005) TCGA-FS-A4F9-06 2 88387541 88387541 C T SMYD1 Missense_Mutation p.P159S 0.06 tolerated(0.35) benign(0.342) TCGA-FS-A4F9-06 2 89513066 89513066 C T IGKV1-27 Missense_Mutation p.V65I 0.23 deleterious(0.01) benign(0.003) TCGA-FS-A4F9-06 2 89953133 89953133 C T IGKV1D-33 Silent p.I43I 0.20 TCGA-FS-A4F9-06 3 100373734 100373734 T C GPR128 Silent p.L479L 0.43 TCGA-FS-A4F9-06 3 100413972 100413972 A T GPR128 3'UTR 0.29 TCGA-FS-A4F9-06 3 108672412 108672412 C T GUCA1C Silent p.T66T 0.48 TCGA-FS-A4F9-06 3 108813861 108813861 C T MORC1 Missense_Mutation p.D160N 0.38 tolerated(0.43) possibly_damaging(0.529) TCGA-FS-A4F9-06 3 118865454 118865454 G A C3orf30 Missense_Mutation p.E140K 0.32 tolerated(0.29) benign(0.002) TCGA-FS-A4F9-06 3 119325752 119325752 G A PLA1A Missense_Mutation p.G69R 0.42 tolerated(0.36) benign(0.043) TCGA-FS-A4F9-06 3 121980881 121980881 C T CASR Silent p.F333F 0.45 TCGA-FS-A4F9-06 3 13383560 13383560 G A NUP210 Missense_Mutation p.L1010F 0.42 deleterious(0.03) benign(0.23) TCGA-FS-A4F9-06 3 138290150 138290150 C T CEP70 Missense_Mutation p.G40S 0.33 deleterious(0) possibly_damaging(0.865) TCGA-FS-A4F9-06 3 138724853 138724853 C T PRR23A Silent p.S86S 0.27 TCGA-FS-A4F9-06 3 140396978 140396978 G A TRIM42 5'UTR 0.57 TCGA-FS-A4F9-06 3 142840604 142840604 C T CHST2 Missense_Mutation p.P316S 0.55 tolerated(0.06) benign(0.212) TCGA-FS-A4F9-06 3 151012015 151012015 G A GPR87 Missense_Mutation p.S340L 0.46 tolerated(0.06) probably_damaging(0.996) TCGA-FS-A4F9-06 3 151155772 151155772 G A IGSF10 Missense_Mutation p.H2193Y 0.42 deleterious(0.02) probably_damaging(1) TCGA-FS-A4F9-06 3 164783091 164783091 C T SI Nonsense_Mutation p.W255* 0.36 TCGA-FS-A4F9-06 3 164906675 164906675 C T SLITRK3 Silent p.G648G 0.39 TCGA-FS-A4F9-06 3 164906676 164906676 C T SLITRK3 Missense_Mutation p.G648E 0.39 tolerated(0.7) benign(0.014) TCGA-FS-A4F9-06 3 17226675 17226675 G A TBC1D5 Missense_Mutation p.S615F 0.39 deleterious(0) probably_damaging(0.993) TCGA-FS-A4F9-06 3 189706783 189706783 C T LEPREL1 Missense_Mutation p.E290K 0.32 deleterious(0.01) benign(0.098) TCGA-FS-A4F9-06 3 193061834 193061834 C T ATP13A5 Silent p.E275E 0.55 TCGA-FS-A4F9-06 3 194062354 194062354 G A CPN2 Silent p.L360L 0.47 TCGA-FS-A4F9-06 3 195490396 195490396 G A MUC4 Nonsense_Mutation p.Q4721* 0.47 TCGA-FS-A4F9-06 3 197680974 197680974 C T RPL35A Nonsense_Mutation p.R89* 0.28 TCGA-FS-A4F9-06 3 27346345 27346345 G A NEK10 Silent p.L307L 0.43 TCGA-FS-A4F9-06 3 32915400 32915400 C T TRIM71 Nonsense_Mutation p.Q315* 0.43 TCGA-FS-A4F9-06 3 38291485 38291485 C T OXSR1 Nonsense_Mutation p.R451* 0.33 TCGA-FS-A4F9-06 3 38793882 38793882 C T SCN10A Missense_Mutation p.G528E 0.35 tolerated(0.28) benign(0.076) TCGA-FS-A4F9-06 3 41266103 41266103 G A CTNNB1 Missense_Mutation p.G34R 0.50 deleterious(0) probably_damaging(0.997) TCGA-FS-A4F9-06 3 48612531 48612531 C T COL7A1 Missense_Mutation p.G2082E 0.46 unknown(0) TCGA-FS-A4F9-06 3 49148196 49148196 G A USP19 Missense_Mutation p.R1214C 0.47 deleterious(0) possibly_damaging(0.698) TCGA-FS-A4F9-06 3 49694346 49694346 G A BSN Missense_Mutation p.E2453K 0.50 unknown(0) TCGA-FS-A4F9-06 3 50256137 50256137 C T SLC38A3 RNA 0.37 TCGA-FS-A4F9-06 3 52020304 52020304 G A ACY1 Silent p.E131E 0.31 TCGA-FS-A4F9-06 3 7620365 7620365 C T GRM7 Missense_Mutation p.A591V 0.45 deleterious(0) probably_damaging(0.989) TCGA-FS-A4F9-06 3 7721804 7721804 A C GRM7 Silent p.L840L 0.52 TCGA-FS-A4F9-06 3 77657042 77657042 C T ROBO2 Missense_Mutation p.P1093L 0.54 deleterious(0.03) possibly_damaging(0.713) TCGA-FS-A4F9-06 3 85961546 85961546 G A CADM2 Missense_Mutation p.D178N 0.39 tolerated(0.43) benign(0.065) TCGA-FS-A4F9-06 3 93768262 93768263 AG - ARL13B Frame_Shift_Del p.K347Nfs*2 0.21 TCGA-FS-A4F9-06 3 97806870 97806870 C T OR5AC2 Missense_Mutation p.P285L 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 4 111397659 111397659 G A ENPEP Missense_Mutation p.G30E 0.42 deleterious(0.01) probably_damaging(0.972) TCGA-FS-A4F9-06 4 111397939 111397939 C T ENPEP Silent p.I123I 0.39 TCGA-FS-A4F9-06 4 113506804 113506815 TATAAAATGATA - C4orf21 In_Frame_Del p.I1328_Y1331del 0.40 TCGA-FS-A4F9-06 4 115544660 115544660 C T UGT8 Silent p.S208S 0.37 TCGA-FS-A4F9-06 4 115754795 115754795 A G NDST4 Missense_Mutation p.V788A 0.44 deleterious(0.05) probably_damaging(0.991) TCGA-FS-A4F9-06 4 125592977 125592977 G A ANKRD50 Silent p.S485S 0.41 TCGA-FS-A4F9-06 4 126370225 126370225 G A FAT4 Missense_Mutation p.R2685Q 0.41 benign(0.023) TCGA-FS-A4F9-06 4 141315071 141315071 T G CLGN Missense_Mutation p.D425A 0.35 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 4 166929186 166929186 G A TLL1 Silent p.R301R 0.40 TCGA-FS-A4F9-06 4 166999063 166999063 G A TLL1 Missense_Mutation p.E775K 0.36 tolerated(0.93) benign(0.021) TCGA-FS-A4F9-06 4 169169387 169169388 CA - DDX60 Frame_Shift_Del p.V1305Gfs*15 0.24 TCGA-FS-A4F9-06 4 178283746 178283746 G A NEIL3 3'UTR 0.82 TCGA-FS-A4F9-06 4 1821173 1821173 G A LETM1 Silent p.I545I 0.43 TCGA-FS-A4F9-06 4 37851831 37851831 C T PGM2 Missense_Mutation p.S480F 0.56 deleterious(0) possibly_damaging(0.779) TCGA-FS-A4F9-06 4 6304153 6304153 C T WFS1 Silent p.F877F 0.61 TCGA-FS-A4F9-06 4 69512998 69512998 C T UGT2B15 Missense_Mutation p.G473R 0.43 deleterious(0.01) possibly_damaging(0.905) TCGA-FS-A4F9-06 4 70355283 70355283 C T UGT2B4 Missense_Mutation p.M292I 0.47 tolerated(0.17) benign(0.03) TCGA-FS-A4F9-06 4 74347571 74347571 C T AFM Missense_Mutation p.R27W 0.43 deleterious(0.01) benign(0.023) TCGA-FS-A4F9-06 4 77660215 77660215 G A SHROOM3 Missense_Mutation p.E297K 0.45 deleterious(0) possibly_damaging(0.826) TCGA-FS-A4F9-06 4 79373405 79373405 C T FRAS1 Silent p.T2220T 0.47 TCGA-FS-A4F9-06 4 85564255 85564255 G A CDS1 Missense_Mutation p.G371S 0.47 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 5 112479058 112479058 C T MCC Splice_Site p.X248_splice 0.48 TCGA-FS-A4F9-06 5 1255463 1255463 G A TERT Silent p.F1032F 0.48 TCGA-FS-A4F9-06 5 128365384 128365384 G A SLC27A6 Missense_Mutation p.R556Q 0.31 deleterious(0.05) benign(0.038) TCGA-FS-A4F9-06 5 133997226 133997228 AAT - SEC24A In_Frame_Del p.Q172_Y173delinsH 0.33 TCGA-FS-A4F9-06 5 134343808 134343808 C T CATSPER3 Silent p.F218F 0.49 TCGA-FS-A4F9-06 5 137284658 137284658 G A FAM13B Missense_Mutation p.P694S 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 5 137593547 137593547 G A GFRA3 Missense_Mutation p.P189L 0.55 tolerated(0.69) benign(0.067) TCGA-FS-A4F9-06 5 137849282 137849282 G A ETF1 Silent p.F172F 0.43 TCGA-FS-A4F9-06 5 139739896 139739896 G A SLC4A9 Silent p.L25L 0.52 TCGA-FS-A4F9-06 5 140481936 140481936 G A PCDHB3 Missense_Mutation p.G568D 0.37 deleterious_low_confidence(0.03) benign(0.082) TCGA-FS-A4F9-06 5 140537261 140537261 C T PCDHB17 Missense_Mutation p.S562L 0.55 tolerated_low_confidence(0.13) benign(0.018) TCGA-FS-A4F9-06 5 140559376 140559376 G A PCDHB8 Silent p.V587V 0.14 TCGA-FS-A4F9-06 5 140734911 140734911 C T PCDHGA4 Silent p.I48I 0.41 TCGA-FS-A4F9-06 5 140751612 140751612 T C PCDHGB3 Silent p.L551L 0.33 TCGA-FS-A4F9-06 5 147594480 147594480 A G SPINK6 Silent p.G70G 0.29 TCGA-FS-A4F9-06 5 149907734 149907734 C T NDST1 Silent p.F294F 0.47 TCGA-FS-A4F9-06 5 156347514 156347514 C T TIMD4 Missense_Mutation p.G338E 0.27 deleterious(0.05) benign(0.285) TCGA-FS-A4F9-06 5 156770374 156770374 C T FNDC9 Silent p.T57T 0.37 TCGA-FS-A4F9-06 5 167894950 167894950 C T WWC1 Missense_Mutation p.P1092S 0.25 tolerated(0.07) benign(0.31) TCGA-FS-A4F9-06 5 17354595 17354595 C G CTD-2139B15.2 RNA 0.53 TCGA-FS-A4F9-06 5 174868996 174868996 C T DRD1 Silent p.A369A 0.45 TCGA-FS-A4F9-06 5 178194175 178194175 C T AACSP1 RNA 0.33 TCGA-FS-A4F9-06 5 178559900 178559900 T G ADAMTS2 Missense_Mutation p.K696T 0.38 tolerated(0.42) probably_damaging(0.987) TCGA-FS-A4F9-06 5 180166378 180166378 C T OR2Y1 Silent p.V227V 0.40 TCGA-FS-A4F9-06 5 19473189 19473189 C T CDH18 3'UTR 0.50 TCGA-FS-A4F9-06 5 21975472 21975472 C T CDH12 Missense_Mutation p.G85E 0.48 deleterious(0.03) possibly_damaging(0.879) TCGA-FS-A4F9-06 5 32087495 32087495 C T PDZD2 Missense_Mutation p.P1314L 0.33 deleterious(0.01) benign(0.282) TCGA-FS-A4F9-06 5 33576247 33576247 G A ADAMTS12 Missense_Mutation p.T1295I 0.46 deleterious(0.03) benign(0.03) TCGA-FS-A4F9-06 5 34020621 34020621 C T C1QTNF3 3'UTR 0.40 TCGA-FS-A4F9-06 5 39315967 39315967 G A C9 Silent p.S260S 0.35 TCGA-FS-A4F9-06 5 41199939 41199939 G C C6 Missense_Mutation p.P126A 0.44 tolerated(0.11) benign(0.076) TCGA-FS-A4F9-06 5 462334 462334 C T EXOC3 Missense_Mutation p.P522L 0.39 tolerated(0.86) benign(0) TCGA-FS-A4F9-06 5 52370278 52370278 G A ITGA2 Missense_Mutation p.G879S 0.47 tolerated(0.16) benign(0.091) TCGA-FS-A4F9-06 5 54603489 54603489 G A DHX29 5'UTR 0.44 TCGA-FS-A4F9-06 5 60050595 60050595 C T ELOVL7 Silent p.Q234Q 0.41 TCGA-FS-A4F9-06 5 70819937 70819937 C T BDP1 Silent p.T1853T 0.46 TCGA-FS-A4F9-06 5 76003025 76003025 G A IQGAP2 Missense_Mutation p.D1539N 0.41 deleterious(0.03) probably_damaging(0.971) TCGA-FS-A4F9-06 5 79026207 79026207 C T CMYA5 Missense_Mutation p.P540L 0.44 possibly_damaging(0.908) TCGA-FS-A4F9-06 5 89981778 89981778 G A GPR98 Silent p.V2152V 0.50 TCGA-FS-A4F9-06 6 10894137 10894137 G A SYCP2L Missense_Mutation p.G39E 0.27 deleterious(0.01) probably_damaging(0.959) TCGA-FS-A4F9-06 6 116949433 116949433 T C RSPH4A Silent p.N521N 0.44 TCGA-FS-A4F9-06 6 117128028 117128028 T A GPRC6A Missense_Mutation p.Q280H 0.41 tolerated(0.11) possibly_damaging(0.726) TCGA-FS-A4F9-06 6 117243293 117243293 G A RFX6 Silent p.V472V 0.36 TCGA-FS-A4F9-06 6 12121702 12121703 AG - HIVEP1 Frame_Shift_Del p.E559Vfs*17 0.18 TCGA-FS-A4F9-06 6 123319270 123319270 G A CLVS2 Silent p.R116R 0.37 TCGA-FS-A4F9-06 6 125232330 125232330 C T RP11-510H23.1 RNA 0.55 TCGA-FS-A4F9-06 6 127901503 127901503 C T C6orf58 Missense_Mutation p.P161L 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 6 128134804 128134804 G A THEMIS Missense_Mutation p.P328S 0.47 tolerated(0.19) benign(0.187) TCGA-FS-A4F9-06 6 128410977 128410977 G A PTPRK Silent p.D441D 0.37 TCGA-FS-A4F9-06 6 138199917 138199917 C T TNFAIP3 Silent p.P445P 0.43 TCGA-FS-A4F9-06 6 146007362 146007362 G A EPM2A Silent p.L124L 0.89 TCGA-FS-A4F9-06 6 148861626 148861626 C T SASH1 Nonsense_Mutation p.Q715* 0.71 TCGA-FS-A4F9-06 6 157517341 157517341 C T ARID1B Missense_Mutation p.P1302L 0.75 probably_damaging(0.939) TCGA-FS-A4F9-06 6 159670097 159670097 C T FNDC1 Missense_Mutation p.P1573S 0.62 deleterious(0.01) probably_damaging(0.98) TCGA-FS-A4F9-06 6 166576055 166576055 G A T Missense_Mutation p.P262S 0.35 tolerated(0.43) benign(0.002) TCGA-FS-A4F9-06 6 170033160 170033160 G A WDR27 Silent p.I702I 0.36 TCGA-FS-A4F9-06 6 25921430 25921430 G A SLC17A2 Missense_Mutation p.R151W 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 6 26413255 26413256 GA - BTN3A1 Intron 0.25 TCGA-FS-A4F9-06 6 26428262 26428262 C T BTN2A3P RNA 0.33 TCGA-FS-A4F9-06 6 28269703 28269703 G A PGBD1 Missense_Mutation p.G691E 0.53 tolerated(0.1) probably_damaging(1) TCGA-FS-A4F9-06 6 30043593 30043593 C T RNF39 5'UTR 0.28 TCGA-FS-A4F9-06 6 30122210 30122210 C T TRIM10 Missense_Mutation p.D328N 0.21 deleterious(0.02) benign(0.172) TCGA-FS-A4F9-06 6 30128370 30128370 G A TRIM10 Missense_Mutation p.S89F 0.73 deleterious(0.03) possibly_damaging(0.553) TCGA-FS-A4F9-06 6 30644910 30644910 G A PPP1R18 3'UTR 0.54 TCGA-FS-A4F9-06 6 32083520 32083520 G A ATF6B Missense_Mutation p.P703L 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A4F9-06 6 32125486 32125486 C T PPT2 Missense_Mutation p.P211L 0.33 deleterious(0.04) benign(0.292) TCGA-FS-A4F9-06 6 33996038 33996038 C T GRM4 Missense_Mutation p.E850K 0.39 deleterious(0.01) benign(0.16) TCGA-FS-A4F9-06 6 36359399 36359399 C T PXT1 3'UTR 0.58 TCGA-FS-A4F9-06 6 38897412 38897412 G A DNAH8 Silent p.K3531K 0.41 TCGA-FS-A4F9-06 6 42832438 42832438 A G GLTSCR1L Missense_Mutation p.K832E 0.42 tolerated(0.62) benign(0.005) TCGA-FS-A4F9-06 6 43008396 43008396 G A CUL7 Missense_Mutation p.R1383C 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 6 43271917 43271917 C T SLC22A7 Silent p.A509A 0.50 TCGA-FS-A4F9-06 6 47680330 47680330 C T GPR115 Nonsense_Mutation p.R180* 0.50 TCGA-FS-A4F9-06 6 49660361 49660361 G A CRISP2 3'UTR 0.58 TCGA-FS-A4F9-06 6 51497448 51497448 G A PKHD1 Silent p.I3860I 0.49 TCGA-FS-A4F9-06 6 70866590 70866590 G T COL19A1 Missense_Mutation p.G756V 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 6 70966482 70966482 G A COL9A1 Missense_Mutation p.P498S 0.25 probably_damaging(0.97) TCGA-FS-A4F9-06 6 7230628 7230628 C T RREB1 Missense_Mutation p.R766C 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 6 72967929 72967929 C T RIMS1 Missense_Mutation p.R958C 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F9-06 6 74183275 74183275 C T MTO1 Silent p.P241P 0.43 TCGA-FS-A4F9-06 6 76023645 76023645 C T FILIP1 Missense_Mutation p.E635K 0.48 deleterious(0) probably_damaging(0.998) TCGA-FS-A4F9-06 6 83869530 83869531 TG - DOPEY1 Frame_Shift_Del p.V2272Gfs*11 0.15 TCGA-FS-A4F9-06 6 84627749 84627750 AG - CYB5R4 Frame_Shift_Del p.D158Yfs*8 0.26 TCGA-FS-A4F9-06 7 100184234 100184234 C T FBXO24 5'Flank 0.43 TCGA-FS-A4F9-06 7 102553481 102553481 C T LRRC17 5'UTR 0.31 TCGA-FS-A4F9-06 7 107752349 107752349 C T LAMB4 Missense_Mutation p.D79N 0.45 tolerated(0.8) benign(0.015) TCGA-FS-A4F9-06 7 110764029 110764029 G A LRRN3 Missense_Mutation p.E401K 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-FS-A4F9-06 7 117008756 117008756 G A ASZ1 Silent p.L357L 0.51 TCGA-FS-A4F9-06 7 136700663 136700663 G A CHRM2 Missense_Mutation p.G351S 0.34 tolerated(1) benign(0.026) TCGA-FS-A4F9-06 7 136912631 136912631 C T PTN 3'UTR 0.30 TCGA-FS-A4F9-06 7 138487772 138487772 G A TMEM213 Silent p.L94L 0.36 TCGA-FS-A4F9-06 7 141755446 141755446 G A MGAM Missense_Mutation p.G1135R 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A4F9-06 7 141799479 141799479 C T MGAM Missense_Mutation p.H1710Y 0.42 deleterious(0.01) possibly_damaging(0.721) TCGA-FS-A4F9-06 7 141954930 141954930 G A PRSS58 Silent p.I127I 0.40 TCGA-FS-A4F9-06 7 142920098 142920098 G A TAS2R40 Silent p.R309R 0.38 TCGA-FS-A4F9-06 7 143556204 143556204 C T FAM115A Missense_Mutation p.E740K 0.24 deleterious(0.05) probably_damaging(0.968) TCGA-FS-A4F9-06 7 144288587 144288587 G A TPK1 Nonsense_Mutation p.Q144* 0.48 TCGA-FS-A4F9-06 7 14517794 14517794 G A DGKB Silent p.F610F 0.58 TCGA-FS-A4F9-06 7 157000165 157000165 C T UBE3C Missense_Mutation p.P498S 0.39 deleterious(0.01) probably_damaging(0.927) TCGA-FS-A4F9-06 7 26232187 26232187 A G HNRNPA2B1 Silent p.G337G 0.37 TCGA-FS-A4F9-06 7 34851444 34851444 C A NPSR1 Silent p.A149A 0.43 TCGA-FS-A4F9-06 7 40041513 40041513 C A CDK13 Missense_Mutation p.P746T 0.36 deleterious(0) probably_damaging(0.999) TCGA-FS-A4F9-06 7 4171979 4171979 C T SDK1 Silent p.L1384L 0.30 TCGA-FS-A4F9-06 7 50566849 50566849 C T DDC Silent p.V291V 0.41 TCGA-FS-A4F9-06 7 5540382 5540382 G A FBXL18 Silent p.I506I 0.44 TCGA-FS-A4F9-06 7 63538926 63538926 A T ZNF727 Nonstop_Mutation p.*500Lext*? 0.44 TCGA-FS-A4F9-06 7 64292605 64292605 T G ZNF138 3'UTR 0.22 TCGA-FS-A4F9-06 7 65705773 65705773 A G TPST1 Missense_Mutation p.K121E 0.46 tolerated(0.14) benign(0.41) TCGA-FS-A4F9-06 7 72411452 72411452 C T POM121 Missense_Mutation p.S323F 0.30 deleterious(0) probably_damaging(0.929) TCGA-FS-A4F9-06 7 73961533 73961533 C T GTF2IRD1 Silent p.S643S 0.50 TCGA-FS-A4F9-06 7 74169868 74169868 C T GTF2I Silent p.N951N 0.32 TCGA-FS-A4F9-06 7 92760908 92760908 G A SAMD9L Silent p.F1459F 0.48 TCGA-FS-A4F9-06 7 935128 935128 G A GET4 3'UTR 0.38 TCGA-FS-A4F9-06 8 11189602 11189602 C T SLC35G5 Silent p.S329S 0.39 TCGA-FS-A4F9-06 8 11995636 11995636 C T USP17L2 Missense_Mutation p.G212R 0.30 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A4F9-06 8 125131980 125131980 C T FER1L6 Silent p.F1841F 0.42 TCGA-FS-A4F9-06 8 12943882 12943882 A - DLC1 Frame_Shift_Del p.N1462Mfs*8 0.38 TCGA-FS-A4F9-06 8 133885437 133885437 G A TG Missense_Mutation p.M203I 0.36 deleterious(0.01) probably_damaging(0.954) TCGA-FS-A4F9-06 8 142476634 142476634 G A MROH5 3'UTR 0.37 TCGA-FS-A4F9-06 8 142506592 142506592 G A MROH5 5'UTR 0.51 TCGA-FS-A4F9-06 8 145542017 145542017 G A DGAT1 Silent p.L195L 0.38 TCGA-FS-A4F9-06 8 145773193 145773193 G A ARHGAP39 Missense_Mutation p.S426L 0.56 deleterious(0.02) possibly_damaging(0.59) TCGA-FS-A4F9-06 8 146156086 146156086 G A ZNF16 3'UTR 0.37 TCGA-FS-A4F9-06 8 16032696 16032696 C T MSR1 Missense_Mutation p.A73T 0.47 tolerated(0.05) possibly_damaging(0.858) TCGA-FS-A4F9-06 8 23155595 23155595 G A LOXL2 Silent p.H762H 0.38 TCGA-FS-A4F9-06 8 23155596 23155596 T A LOXL2 Missense_Mutation p.H762L 0.38 tolerated(0.15) benign(0.027) TCGA-FS-A4F9-06 8 30889911 30889911 C T PURG Missense_Mutation p.G130S 0.40 deleterious(0) probably_damaging(0.985) TCGA-FS-A4F9-06 8 35583897 35583897 C T UNC5D Missense_Mutation p.P511S 0.34 deleterious(0.01) possibly_damaging(0.816) TCGA-FS-A4F9-06 8 39502952 39502952 T A ADAM18 Nonsense_Mutation p.C335* 0.39 TCGA-FS-A4F9-06 8 42275279 42275279 C T SLC20A2 3'UTR 0.49 TCGA-FS-A4F9-06 8 43147866 43147866 G A POTEA RNA 0.38 TCGA-FS-A4F9-06 8 49647833 49647833 C T EFCAB1 5'Flank 0.52 TCGA-FS-A4F9-06 8 53038693 53038693 C A ST18 Nonsense_Mutation p.G892* 0.06 TCGA-FS-A4F9-06 8 53076606 53076606 G A ST18 Missense_Mutation p.S447F 0.52 deleterious(0) possibly_damaging(0.853) TCGA-FS-A4F9-06 8 55534816 55534816 C T RP1 Missense_Mutation p.P252L 0.37 deleterious(0.04) benign(0.104) TCGA-FS-A4F9-06 8 70594480 70594480 C T SLCO5A1 Missense_Mutation p.G574E 0.47 deleterious(0) probably_damaging(0.995) TCGA-FS-A4F9-06 8 86250533 86250533 G A CA1 Silent p.I61I 0.48 TCGA-FS-A4F9-06 8 86354322 86354322 C T CA3 Missense_Mutation p.P85S 0.40 tolerated(0.82) benign(0.001) TCGA-FS-A4F9-06 8 87076754 87076754 C T PSKH2 Missense_Mutation p.E98K 0.48 tolerated(0.35) benign(0) TCGA-FS-A4F9-06 9 107266829 107266829 G A OR13F1 Missense_Mutation p.G96R 0.77 tolerated(0.06) probably_damaging(1) TCGA-FS-A4F9-06 9 107266830 107266830 G A OR13F1 Missense_Mutation p.G96E 0.80 deleterious(0.01) probably_damaging(1) TCGA-FS-A4F9-06 9 123725196 123725196 C T C5 Missense_Mutation p.G1458E 0.40 deleterious(0.02) benign(0.182) TCGA-FS-A4F9-06 9 133760887 133760888 TG - ABL1 Frame_Shift_Del p.V1090Gfs*22 0.28 TCGA-FS-A4F9-06 9 140058465 140058465 G A GRIN1 Intron 0.35 TCGA-FS-A4F9-06 9 14722538 14722538 C T CER1 Missense_Mutation p.G45S 0.84 tolerated(0.13) benign(0.044) TCGA-FS-A4F9-06 9 15472710 15472711 TC - PSIP1 Frame_Shift_Del p.R299Kfs*9 0.45 TCGA-FS-A4F9-06 9 2039611 2039611 C T SMARCA2 Silent p.P167P 0.82 TCGA-FS-A4F9-06 9 21206905 21206905 C T IFNA10 Silent p.E64E 0.37 TCGA-FS-A4F9-06 9 35547211 35547211 C T RUSC2 Silent p.L231L 0.84 TCGA-FS-A4F9-06 9 37707467 37707467 C T FRMPD1 Silent p.I52I 0.85 TCGA-FS-A4F9-06 9 5923268 5923268 T C KIAA2026 Missense_Mutation p.S910G 0.90 tolerated(0.09) benign(0.015) TCGA-FS-A4F9-06 9 72723251 72723251 G A MAMDC2 Silent p.S91S 0.40 TCGA-FS-A4F9-06 9 78774080 78774080 G A PCSK5 Missense_Mutation p.A538T 0.30 deleterious(0.02) possibly_damaging(0.705) TCGA-FS-A4F9-06 9 84607124 84607124 C T SPATA31D1 Missense_Mutation p.S580F 0.47 deleterious(0.04) benign(0.008) TCGA-FS-A4F9-06 9 84607125 84607125 C T SPATA31D1 Silent p.S580S 0.47 TCGA-FS-A4F9-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.91 TCGA-FS-A4F9-06 X 123514862 123514862 C T TENM1 Missense_Mutation p.E2575K 0.87 tolerated(0.06) benign(0.04) TCGA-FS-A4F9-06 X 128649886 128649886 C A SMARCA1 Nonsense_Mutation p.E172* 0.92 TCGA-FS-A4F9-06 X 128926351 128926351 G A SASH3 Missense_Mutation p.E164K 0.87 deleterious(0.02) benign(0.371) TCGA-FS-A4F9-06 X 12939545 12939545 C T TLR8 Missense_Mutation p.P796S 0.91 deleterious(0.03) probably_damaging(0.948) TCGA-FS-A4F9-06 X 130412058 130412058 C T IGSF1 Missense_Mutation p.E703K 0.85 tolerated(0.33) benign(0.072) TCGA-FS-A4F9-06 X 135431960 135431960 C T GPR112 Missense_Mutation p.S2032F 0.93 deleterious(0) probably_damaging(0.98) TCGA-FS-A4F9-06 X 151870209 151870209 C T MAGEA6 Missense_Mutation p.S300F 0.91 deleterious(0.04) benign(0.018) TCGA-FS-A4F9-06 X 154159724 154159724 G A F8 Missense_Mutation p.P781S 0.91 tolerated(0.39) benign(0.017) TCGA-FS-A4F9-06 X 155127820 155127820 G A VAMP7 Silent p.K83K 0.41 TCGA-FS-A4F9-06 X 2139245 2139245 G A DHRSX Missense_Mutation p.S277F 0.46 deleterious(0) possibly_damaging(0.726) TCGA-FS-A4F9-06 X 38262970 38262970 C A OTC Missense_Mutation p.H214N 1.00 tolerated(1) benign(0.027) TCGA-FS-A4F9-06 X 49597218 49597218 C T PAGE4 Missense_Mutation p.P86L 0.89 tolerated(1) possibly_damaging(0.903) TCGA-FS-A4F9-06 X 55650469 55650469 C T FOXR2 Missense_Mutation p.P109S 0.86 tolerated(0.21) benign(0.176) TCGA-FS-A4F9-06 X 63411312 63411312 G A AMER1 Missense_Mutation p.H619Y 0.81 tolerated(0.52) benign(0.001) TCGA-FS-A4F9-06 X 74641751 74641751 G A ZDHHC15 Nonsense_Mutation p.Q271* 0.92 TCGA-FS-A4F9-06 X 77224665 77224665 C T PGAM4 Silent p.K157K 0.92 TCGA-FS-A4F9-06 Y 16952315 16952315 C T NLGN4Y Nonsense_Mutation p.Q542* 0.87 TCGA-FS-A4FB-06 10 115343993 115343993 C T HABP2 Missense_Mutation p.P442S 0.88 deleterious(0.05) possibly_damaging(0.483) TCGA-FS-A4FB-06 10 118424324 118424324 A T C10orf82 Missense_Mutation p.F137I 0.88 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 10 22016848 22016848 T A MLLT10 Missense_Mutation p.L685H 0.50 deleterious(0) possibly_damaging(0.855) TCGA-FS-A4FB-06 10 49457119 49457119 T A FRMPD2 Missense_Mutation p.K85M 0.82 tolerated(0.07) probably_damaging(0.999) TCGA-FS-A4FB-06 10 84738847 84738847 C T NRG3 Silent p.I518I 1.00 TCGA-FS-A4FB-06 10 91061880 91061880 C T IFIT2 5'UTR 0.79 TCGA-FS-A4FB-06 10 95931110 95931110 C T PLCE1 Missense_Mutation p.L556F 0.89 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FB-06 11 111338293 111338293 C T BTG4 3'UTR 0.38 TCGA-FS-A4FB-06 11 117073725 117073725 C T TAGLN 5'UTR 0.20 TCGA-FS-A4FB-06 11 22380960 22380960 G A SLC17A6 Missense_Mutation p.V154I 0.59 tolerated(0.43) benign(0.277) TCGA-FS-A4FB-06 11 2444150 2444150 C T TRPM5 Silent p.K39K 0.23 TCGA-FS-A4FB-06 11 48286261 48286261 G A OR4X1 Silent p.V283V 0.19 TCGA-FS-A4FB-06 11 64878928 64878928 T C VPS51 Missense_Mutation p.W740R 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 11 65792842 65792842 C T CATSPER1 Missense_Mutation p.D337N 0.33 tolerated(0.38) benign(0.271) TCGA-FS-A4FB-06 11 6867321 6867321 C T OR10A5 Silent p.I136I 0.66 TCGA-FS-A4FB-06 11 71259984 71259984 C T KRTAP5-9 Missense_Mutation p.S94L 0.49 tolerated_low_confidence(0.41) unknown(0) TCGA-FS-A4FB-06 11 85375769 85375769 G A CREBZF Missense_Mutation p.P51S 0.35 deleterious_low_confidence(0.05) benign(0.248) TCGA-FS-A4FB-06 12 100041906 100041906 G A FAM71C 5'UTR 0.93 TCGA-FS-A4FB-06 12 101510497 101510497 C T ANO4 Nonsense_Mutation p.R796* 0.82 TCGA-FS-A4FB-06 12 103352363 103352363 A T ASCL1 Missense_Mutation p.Q114L 0.83 tolerated(0.1) possibly_damaging(0.796) TCGA-FS-A4FB-06 12 109704236 109704236 C T ACACB 3'UTR 0.63 TCGA-FS-A4FB-06 12 111348978 111348978 A G MYL2 Missense_Mutation p.V135A 0.43 deleterious(0) benign(0.411) TCGA-FS-A4FB-06 12 113435446 113435446 C T OAS2 Missense_Mutation p.T250I 0.52 deleterious(0) probably_damaging(0.976) TCGA-FS-A4FB-06 12 14836145 14836145 C T GUCY2C Missense_Mutation p.G148R 0.46 tolerated(0.07) probably_damaging(1) TCGA-FS-A4FB-06 12 2786272 2786272 C T CACNA1C Missense_Mutation p.T1662I 0.56 deleterious(0) possibly_damaging(0.908) TCGA-FS-A4FB-06 12 28116412 28116412 C T PTHLH Silent p.G131G 0.40 TCGA-FS-A4FB-06 12 52306193 52306193 C T ACVRL1 Intron 0.54 TCGA-FS-A4FB-06 12 52844240 52844240 C T KRT6B Silent p.L235L 0.38 TCGA-FS-A4FB-06 12 55357630 55357630 C T TESPA1 Missense_Mutation p.R184Q 0.44 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FB-06 12 65639998 65639998 C T LEMD3 Nonsense_Mutation p.Q877* 0.65 TCGA-FS-A4FB-06 12 7654044 7654044 C T CD163 Missense_Mutation p.E50K 0.52 tolerated(0.05) benign(0.018) TCGA-FS-A4FB-06 12 8975169 8975169 C T A2ML1 5'UTR 0.55 TCGA-FS-A4FB-06 13 19753482 19753482 G A TUBA3C Silent p.V75V 0.49 TCGA-FS-A4FB-06 14 100604171 100604171 C T EVL Intron 0.54 TCGA-FS-A4FB-06 14 100604172 100604172 C T EVL Intron 0.56 TCGA-FS-A4FB-06 14 105416167 105416167 G A AHNAK2 Missense_Mutation p.P1874L 0.44 benign(0) TCGA-FS-A4FB-06 14 20389181 20389181 G A OR4K5 Missense_Mutation p.R139K 0.27 tolerated(0.26) benign(0.012) TCGA-FS-A4FB-06 14 20528335 20528335 C T OR4L1 Silent p.L44L 0.52 TCGA-FS-A4FB-06 14 23938908 23938908 G A NGDN 5'UTR 0.31 TCGA-FS-A4FB-06 14 86089610 86089610 G A FLRT2 Silent p.R584R 0.38 TCGA-FS-A4FB-06 15 23810949 23810949 C T MKRN3 Missense_Mutation p.P7L 0.33 tolerated(0.08) unknown(0) TCGA-FS-A4FB-06 15 25326484 25326484 G A SNORD116-15 RNA 0.45 TCGA-FS-A4FB-06 15 25470195 25470195 C T SNORD115-27 3'Flank 0.40 TCGA-FS-A4FB-06 15 44624241 44624241 A - CASC4 Frame_Shift_Del p.K182Sfs*2 0.33 TCGA-FS-A4FB-06 15 45412968 45412968 A G DUOXA1 Missense_Mutation p.Y126H 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 15 49448125 49448125 A - COPS2 5'Flank 0.21 TCGA-FS-A4FB-06 15 50489714 50489714 G A SLC27A2 Missense_Mutation p.E166K 0.46 tolerated(0.06) possibly_damaging(0.532) TCGA-FS-A4FB-06 15 51763533 51763533 G A DMXL2 Missense_Mutation p.P2427S 0.42 tolerated(0.46) benign(0.166) TCGA-FS-A4FB-06 15 58855785 58855785 G C LIPC Missense_Mutation p.K417N 0.11 tolerated(0.07) benign(0.084) TCGA-FS-A4FB-06 15 58855790 58855790 A G LIPC Missense_Mutation p.K419R 0.12 tolerated(0.21) benign(0.029) TCGA-FS-A4FB-06 15 67713708 67713708 A T IQCH Missense_Mutation p.K766N 0.44 deleterious(0.04) benign(0.048) TCGA-FS-A4FB-06 15 73995154 73995154 G A CD276 Missense_Mutation p.D154N 0.38 tolerated(0.44) probably_damaging(0.989) TCGA-FS-A4FB-06 15 75632325 75632325 C T COMMD4 Silent p.T193T 0.17 TCGA-FS-A4FB-06 15 89056264 89056264 G A DET1 Missense_Mutation p.P535L 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 15 89056265 89056265 G A DET1 Missense_Mutation p.P535S 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 16 23200768 23200768 C T SCNN1G Missense_Mutation p.P132S 0.53 tolerated(0.99) benign(0.001) TCGA-FS-A4FB-06 16 23379183 23379183 C T SCNN1B Silent p.F261F 0.32 TCGA-FS-A4FB-06 16 31383009 31383009 C T ITGAX Silent p.P688P 0.40 TCGA-FS-A4FB-06 16 66948194 66948194 C T CDH16 Silent p.E235E 0.45 TCGA-FS-A4FB-06 16 71570893 71570893 G A CHST4 Missense_Mutation p.D105N 0.43 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 16 84203728 84203728 G A DNAAF1 Missense_Mutation p.E432K 0.47 tolerated(0.11) benign(0.017) TCGA-FS-A4FB-06 16 88747884 88747884 G A SNAI3 Silent p.L105L 0.39 TCGA-FS-A4FB-06 16 9857692 9857692 C T GRIN2A Missense_Mutation p.D1237N 0.43 deleterious(0) probably_damaging(0.977) TCGA-FS-A4FB-06 17 10215380 10215380 C T MYH13 Nonsense_Mutation p.W1460* 0.37 TCGA-FS-A4FB-06 17 12661487 12661487 C T MYOCD Missense_Mutation p.S763L 0.49 deleterious(0.04) benign(0.005) TCGA-FS-A4FB-06 17 18025395 18025396 - CAGGGCCC MYO15A Frame_Shift_Ins p.E1098Gfs*30 0.31 TCGA-FS-A4FB-06 17 18025416 18025416 C T MYO15A Missense_Mutation p.P1101L 0.34 unknown(0) TCGA-FS-A4FB-06 17 18025417 18025417 C T MYO15A Silent p.P1101P 0.35 TCGA-FS-A4FB-06 17 33690140 33690140 C T SLFN11 Silent p.R229R 0.30 TCGA-FS-A4FB-06 17 33690141 33690141 C T SLFN11 Missense_Mutation p.R229K 0.30 tolerated(0.22) benign(0.001) TCGA-FS-A4FB-06 17 36495408 36495408 C T GPR179 Silent p.R265R 0.55 TCGA-FS-A4FB-06 17 37840880 37840880 G A PGAP3 Silent p.P134P 0.35 TCGA-FS-A4FB-06 17 38020389 38020389 G T IKZF3 5'UTR 0.34 TCGA-FS-A4FB-06 17 38349179 38349179 C T RAPGEFL1 Silent p.D376D 0.34 TCGA-FS-A4FB-06 17 38416832 38416832 C T WIPF2 Nonsense_Mutation p.R37* 0.33 TCGA-FS-A4FB-06 17 39471947 39471947 C T KRTAP17-1 5'UTR 0.54 TCGA-FS-A4FB-06 17 48600955 48600955 C T MYCBPAP Intron 0.45 TCGA-FS-A4FB-06 17 5461922 5461922 C T NLRP1 Silent p.R698R 0.41 TCGA-FS-A4FB-06 17 60030380 60030380 A G MED13 Silent p.G2021G 0.40 TCGA-FS-A4FB-06 17 74621474 74621474 C T ST6GALNAC1 Missense_Mutation p.D581N 0.34 possibly_damaging(0.474) TCGA-FS-A4FB-06 18 18564360 18564360 A G ROCK1 Missense_Mutation p.L814S 0.44 deleterious(0.01) benign(0.019) TCGA-FS-A4FB-06 18 21501017 21501017 C T LAMA3 Missense_Mutation p.S2681L 0.31 benign(0.004) TCGA-FS-A4FB-06 18 57016392 57016392 G A LMAN1 Missense_Mutation p.P239L 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 18 57016393 57016393 G T LMAN1 Missense_Mutation p.P239T 0.44 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FB-06 18 57147453 57147453 C T CCBE1 Missense_Mutation p.G77E 0.55 deleterious(0) probably_damaging(0.952) TCGA-FS-A4FB-06 19 12774538 12774538 G A MAN2B1 Missense_Mutation p.P248S 0.56 tolerated(0.11) benign(0.424) TCGA-FS-A4FB-06 19 13192528 13192528 C T NFIX Silent p.F371F 0.43 TCGA-FS-A4FB-06 19 15905351 15905351 C T OR10H5 Missense_Mutation p.H165Y 0.36 tolerated(0.19) possibly_damaging(0.723) TCGA-FS-A4FB-06 19 19655285 19655285 C T CILP2 Missense_Mutation p.S644F 0.58 deleterious(0) benign(0.372) TCGA-FS-A4FB-06 19 1980168 1980168 G A CSNK1G2 Missense_Mutation p.R405K 0.43 deleterious_low_confidence(0.05) benign(0.403) TCGA-FS-A4FB-06 19 22574496 22574496 C T ZNF98 Missense_Mutation p.G514E 0.27 tolerated(0.07) benign(0.009) TCGA-FS-A4FB-06 19 31040061 31040061 G A ZNF536 Missense_Mutation p.D1179N 0.40 tolerated_low_confidence(0.22) benign(0.287) TCGA-FS-A4FB-06 19 38951170 38951170 T C RYR1 Missense_Mutation p.V839A 0.48 benign(0.073) TCGA-FS-A4FB-06 19 43920262 43920262 C T TEX101 Silent p.L44L 0.42 TCGA-FS-A4FB-06 19 47569796 47569796 G A ZC3H4 Silent p.P1243P 0.53 TCGA-FS-A4FB-06 19 50099719 50099719 C T PRR12 Silent p.S709S 0.39 TCGA-FS-A4FB-06 19 51135998 51135998 G A SYT3 Silent p.F73F 0.31 TCGA-FS-A4FB-06 19 51501088 51501088 C T KLK8 Silent p.K227K 0.41 TCGA-FS-A4FB-06 19 52130829 52130829 G A SIGLEC5 Missense_Mutation p.P390S 0.54 deleterious(0.03) possibly_damaging(0.896) TCGA-FS-A4FB-06 19 54183195 54183195 C T MIR519E RNA 0.29 TCGA-FS-A4FB-06 19 54308587 54308587 C T NLRP12 Missense_Mutation p.M787I 0.50 tolerated(0.35) benign(0.004) TCGA-FS-A4FB-06 19 55098691 55098691 G A LILRA2 Missense_Mutation p.D444N 0.31 deleterious(0.02) benign(0.343) TCGA-FS-A4FB-06 19 55143585 55143585 C T LILRB1 Silent p.P186P 0.44 TCGA-FS-A4FB-06 19 6467911 6467911 G A DENND1C Silent p.P670P 0.55 TCGA-FS-A4FB-06 19 7168079 7168079 A G INSR Missense_Mutation p.Y504H 0.60 tolerated(0.25) benign(0.003) TCGA-FS-A4FB-06 19 7168080 7168080 A G INSR Silent p.S503S 0.58 TCGA-FS-A4FB-06 19 7267789 7267789 G A INSR Silent p.F73F 0.53 TCGA-FS-A4FB-06 1 100155377 100155377 C T PALMD Missense_Mutation p.P521S 0.45 tolerated(0.72) benign(0.11) TCGA-FS-A4FB-06 1 110768751 110768751 C T KCNC4 Silent p.F590F 0.39 TCGA-FS-A4FB-06 1 115217461 115217461 G A AMPD1 Missense_Mutation p.P604L 0.44 deleterious(0) probably_damaging(0.911) TCGA-FS-A4FB-06 1 115217462 115217462 G A AMPD1 Missense_Mutation p.P604S 0.46 deleterious(0) possibly_damaging(0.803) TCGA-FS-A4FB-06 1 144917888 144917888 G A PDE4DIP Silent p.T466T 0.15 TCGA-FS-A4FB-06 1 152060576 152060576 A G TCHHL1 Missense_Mutation p.F15S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 1 158263018 158263018 G A CD1C Missense_Mutation p.M302I 0.44 tolerated(0.83) benign(0.002) TCGA-FS-A4FB-06 1 161044465 161044465 G A PVRL4 Silent p.I312I 0.31 TCGA-FS-A4FB-06 1 168274382 168274382 C T TBX19 Silent p.H288H 0.47 TCGA-FS-A4FB-06 1 168274383 168274383 C A TBX19 Silent p.R289R 0.47 TCGA-FS-A4FB-06 1 170967454 170967454 C T MROH9 Intron 0.26 TCGA-FS-A4FB-06 1 181684487 181684487 C T CACNA1E Silent p.L395L 0.50 TCGA-FS-A4FB-06 1 181714493 181714493 G A CACNA1E Intron 0.42 TCGA-FS-A4FB-06 1 185963957 185963957 G A HMCN1 Silent p.K1172K 0.60 TCGA-FS-A4FB-06 1 186077644 186077644 G A HMCN1 Missense_Mutation p.R3635Q 0.43 benign(0.042) TCGA-FS-A4FB-06 1 196964938 196964938 G A CFHR5 Silent p.V233V 0.62 TCGA-FS-A4FB-06 1 223285778 223285778 G A TLR5 Missense_Mutation p.S199F 0.47 tolerated(0.33) benign(0.027) TCGA-FS-A4FB-06 1 233134884 233134884 C T PCNXL2 Missense_Mutation p.R1857K 0.33 tolerated(0.58) benign(0.003) TCGA-FS-A4FB-06 1 243328992 243328992 G A CEP170 Missense_Mutation p.A757V 0.18 tolerated(0.21) benign(0.002) TCGA-FS-A4FB-06 1 24426248 24426248 C T MYOM3 Missense_Mutation p.R193Q 0.57 tolerated(0.41) benign(0.023) TCGA-FS-A4FB-06 1 248059147 248059147 G A OR2W3 Missense_Mutation p.G87R 0.40 deleterious(0.03) probably_damaging(0.972) TCGA-FS-A4FB-06 1 248112588 248112588 G A OR2L8 Missense_Mutation p.M143I 0.40 tolerated(0.08) benign(0.288) TCGA-FS-A4FB-06 1 248525018 248525018 C T OR2T4 Silent p.L46L 0.53 TCGA-FS-A4FB-06 1 248551383 248551383 C T OR2T6 Silent p.L158L 0.31 TCGA-FS-A4FB-06 1 57476832 57476832 C T DAB1 Missense_Mutation p.E520K 0.40 tolerated(0.83) benign(0.014) TCGA-FS-A4FB-06 20 33173345 33173345 G A PIGU Silent p.F274F 0.35 TCGA-FS-A4FB-06 20 34763552 34763552 C T EPB41L1 Missense_Mutation p.S86L 0.39 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 20 35749373 35749373 C T MROH8 Missense_Mutation p.M708I 0.53 deleterious(0.05) benign(0.133) TCGA-FS-A4FB-06 20 42168801 42168801 C T L3MBTL1 Silent p.P706P 0.37 TCGA-FS-A4FB-06 20 43247138 43247138 C T PKIG 3'UTR 0.50 TCGA-FS-A4FB-06 20 46256364 46256364 C T NCOA3 Missense_Mutation p.R198C 0.43 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 20 56735928 56735928 C T C20orf85 3'UTR 0.63 TCGA-FS-A4FB-06 20 5935274 5935277 TTGA - MCM8 Frame_Shift_Del p.I93Rfs*22 0.24 TCGA-FS-A4FB-06 20 8862495 8862495 G A PLCB1 Silent p.%3D 0.47 TCGA-FS-A4FB-06 21 10914373 10914373 C T TPTE Missense_Mutation p.G449E 0.16 tolerated(0.55) benign(0.006) TCGA-FS-A4FB-06 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.16 deleterious(0.03) possibly_damaging(0.883) TCGA-FS-A4FB-06 21 11039296 11039296 G A BAGE2 RNA 0.08 TCGA-FS-A4FB-06 21 43862610 43862610 T G UBASH3A Missense_Mutation p.F512C 0.52 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 21 44478320 44478320 G A CBS Silent p.L468L 0.39 TCGA-FS-A4FB-06 22 18072870 18072870 G A SLC25A18 Nonsense_Mutation p.W272* 0.32 TCGA-FS-A4FB-06 22 26423117 26423117 G A MYO18B Missense_Mutation p.D2393N 0.58 deleterious(0) possibly_damaging(0.876) TCGA-FS-A4FB-06 22 30866012 30866012 G A SEC14L3 Silent p.P76P 0.39 TCGA-FS-A4FB-06 22 36708162 36708162 G A MYH9 Missense_Mutation p.P554S 0.38 benign(0.018) TCGA-FS-A4FB-06 22 36962426 36962426 C T CACNG2 Missense_Mutation p.S137N 0.42 tolerated(0.09) benign(0.212) TCGA-FS-A4FB-06 22 38120833 38120833 C T TRIOBP Missense_Mutation p.S757F 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-FS-A4FB-06 22 38878539 38878539 T C KDELR3 3'Flank 0.34 TCGA-FS-A4FB-06 22 41923423 41923423 C A ACO2 Missense_Mutation p.H695Q 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FS-A4FB-06 2 103068572 103068572 G A IL18RAP Silent p.R577R 0.46 TCGA-FS-A4FB-06 2 113832386 113832386 G A IL1F10 Missense_Mutation p.A69T 0.45 deleterious(0) possibly_damaging(0.806) TCGA-FS-A4FB-06 2 141130635 141130635 C T LRP1B Nonsense_Mutation p.W3570* 0.42 TCGA-FS-A4FB-06 2 166011151 166011151 C T SCN3A Silent p.G397G 0.42 TCGA-FS-A4FB-06 2 170031891 170031891 G A LRP2 Missense_Mutation p.P3527L 0.27 probably_damaging(0.999) TCGA-FS-A4FB-06 2 172683359 172683359 G A SLC25A12 Silent p.A293A 0.62 TCGA-FS-A4FB-06 2 179600704 179600704 C T TTN Silent p.V4823V 0.35 TCGA-FS-A4FB-06 2 179621344 179621344 G A TTN Missense_Mutation p.S3620F 0.33 TCGA-FS-A4FB-06 2 200233369 200233369 T G SATB2 Missense_Mutation p.Q220P 0.45 deleterious(0) probably_damaging(0.922) TCGA-FS-A4FB-06 2 202245723 202245723 G A TRAK2 Missense_Mutation p.P763L 0.52 tolerated(0.06) possibly_damaging(0.555) TCGA-FS-A4FB-06 2 20939959 20939959 G A C2orf43 Missense_Mutation p.R159C 0.39 deleterious(0) probably_damaging(0.932) TCGA-FS-A4FB-06 2 21231817 21231817 G A APOB Silent p.I2641I 0.48 TCGA-FS-A4FB-06 2 21245826 21245826 C T APOB Missense_Mutation p.G898E 0.46 probably_damaging(0.916) TCGA-FS-A4FB-06 2 219557366 219557366 C T STK36 Missense_Mutation p.S659F 0.48 tolerated(0.72) benign(0.002) TCGA-FS-A4FB-06 2 228882449 228882449 C T SPHKAP Missense_Mutation p.E1041K 0.45 deleterious(0) probably_damaging(0.945) TCGA-FS-A4FB-06 2 231774658 231774658 G A GPR55 3'UTR 0.50 TCGA-FS-A4FB-06 2 241569971 241569971 G A GPR35 Missense_Mutation p.R232K 0.36 tolerated(0.65) benign(0.076) TCGA-FS-A4FB-06 2 27888056 27888056 G T SLC4A1AP Missense_Mutation p.K305N 0.36 deleterious(0.01) possibly_damaging(0.84) TCGA-FS-A4FB-06 2 69172671 69172671 C T GKN2 Intron 0.40 TCGA-FS-A4FB-06 2 73118628 73118628 T C SPR Missense_Mutation p.F250L 0.46 deleterious(0) possibly_damaging(0.778) TCGA-FS-A4FB-06 2 79971575 79971575 G A CTNNA2 Silent p.K55K 0.53 TCGA-FS-A4FB-06 2 88327862 88327862 G A KRCC1 Missense_Mutation p.S74L 0.47 tolerated(0.06) possibly_damaging(0.849) TCGA-FS-A4FB-06 2 89975729 89975729 G A IGKV2D-30 Missense_Mutation p.G9E 0.29 tolerated(0.16) benign(0.003) TCGA-FS-A4FB-06 3 129821749 129821749 C T FAM86HP RNA 0.37 TCGA-FS-A4FB-06 3 142389898 142389898 G A PLS1 Missense_Mutation p.E100K 0.40 tolerated(0.16) benign(0.003) TCGA-FS-A4FB-06 3 195515520 195515520 A T MUC4 Silent p.L977L 0.33 TCGA-FS-A4FB-06 3 195701333 195701333 G A SDHAP1 RNA 0.11 TCGA-FS-A4FB-06 3 21552450 21552450 C T ZNF385D Missense_Mutation p.M114I 0.42 tolerated(0.37) benign(0.004) TCGA-FS-A4FB-06 3 48696375 48696375 G A CELSR3 Silent p.S1231S 0.47 TCGA-FS-A4FB-06 3 51743354 51743354 C T GRM2 Missense_Mutation p.H119Y 0.49 tolerated(1) benign(0.006) TCGA-FS-A4FB-06 3 52415658 52415658 G A DNAH1 Missense_Mutation p.M2537I 0.41 benign(0.01) TCGA-FS-A4FB-06 3 56763490 56763490 G A ARHGEF3 Silent p.S495S 0.45 TCGA-FS-A4FB-06 3 57143616 57143616 G A IL17RD Missense_Mutation p.P167S 0.47 deleterious(0) probably_damaging(0.937) TCGA-FS-A4FB-06 3 58109342 58109342 C T FLNB Missense_Mutation p.P1217S 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 4 120241839 120241839 C T FABP2 Missense_Mutation p.G76R 0.36 deleterious(0.01) possibly_damaging(0.61) TCGA-FS-A4FB-06 4 158281253 158281253 C T GRIA2 Missense_Mutation p.S750F 0.46 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 4 187454897 187454897 C T MTNR1A Nonsense_Mutation p.W333* 0.36 TCGA-FS-A4FB-06 4 46979124 46979124 C T GABRA4 Silent p.V177V 0.24 TCGA-FS-A4FB-06 4 49063829 49063829 A C CWH43 Missense_Mutation p.R674S 0.38 deleterious(0.04) benign(0.127) TCGA-FS-A4FB-06 4 80329072 80329072 C T GK2 Missense_Mutation p.E95K 0.42 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 4 90816651 90816651 C T MMRN1 Nonsense_Mutation p.R177* 0.39 TCGA-FS-A4FB-06 5 147051353 147051353 C T JAKMIP2 Missense_Mutation p.R6Q 0.86 deleterious(0) probably_damaging(0.964) TCGA-FS-A4FB-06 5 176334117 176334117 G A UIMC1 Missense_Mutation p.S637L 1.00 tolerated(0.06) benign(0.012) TCGA-FS-A4FB-06 5 36035757 36035757 G A UGT3A2 3'UTR 0.93 TCGA-FS-A4FB-06 5 36270060 36270060 T G RANBP3L Silent p.A61A 0.87 TCGA-FS-A4FB-06 5 71495434 71495434 C T MAP1B Silent p.L2084L 0.85 TCGA-FS-A4FB-06 5 95728961 95728961 C T PCSK1 Missense_Mutation p.R669Q 0.95 tolerated_low_confidence(0.12) benign(0.004) TCGA-FS-A4FB-06 6 143759801 143759801 G A ADAT2 Missense_Mutation p.P43S 0.93 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 6 31473468 31473468 G A MICB Missense_Mutation p.G49R 0.42 deleterious(0.02) probably_damaging(0.96) TCGA-FS-A4FB-06 6 47682606 47682606 G A GPR115 Missense_Mutation p.G542D 0.44 deleterious(0) probably_damaging(0.983) TCGA-FS-A4FB-06 6 75829185 75829185 G A COL12A1 Missense_Mutation p.S2364L 0.84 probably_damaging(0.998) TCGA-FS-A4FB-06 7 103368612 103368612 C T RELN Silent p.A233A 0.55 TCGA-FS-A4FB-06 7 113518778 113518778 C T PPP1R3A Missense_Mutation p.R790Q 0.45 tolerated(0.35) benign(0.109) TCGA-FS-A4FB-06 7 119915104 119915104 C T KCND2 Missense_Mutation p.R140C 0.52 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A4FB-06 7 120911459 120911459 G A CPED1 Missense_Mutation p.G948E 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-FS-A4FB-06 7 141536292 141536292 C T PRSS37 Missense_Mutation p.G204E 0.46 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FB-06 7 142724121 142724121 G C OR9A2 Missense_Mutation p.F33L 0.35 tolerated(0.73) benign(0.002) TCGA-FS-A4FB-06 7 14647077 14647077 C T DGKB Missense_Mutation p.G473E 0.52 tolerated(0.1) benign(0.102) TCGA-FS-A4FB-06 7 24874318 24874318 C T OSBPL3 Silent p.R511R 0.35 TCGA-FS-A4FB-06 7 47385827 47385827 G A TNS3 Silent p.A803A 0.43 TCGA-FS-A4FB-06 7 48139293 48139293 C T UPP1 Missense_Mutation p.P24L 0.34 deleterious(0) possibly_damaging(0.897) TCGA-FS-A4FB-06 7 48314172 48314172 G A ABCA13 Missense_Mutation p.D1637N 0.33 probably_damaging(0.962) TCGA-FS-A4FB-06 7 7483255 7483255 G A COL28A1 Silent p.G537G 0.44 TCGA-FS-A4FB-06 7 81372774 81372774 C T HGF Missense_Mutation p.G254S 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-FS-A4FB-06 8 116632264 116632264 G A TRPS1 Missense_Mutation p.P21S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A4FB-06 8 121019091 121019091 C T DEPTOR Missense_Mutation p.P325S 0.70 deleterious(0.03) benign(0.323) TCGA-FS-A4FB-06 8 125562196 125562196 C T NDUFB9 3'UTR 0.73 TCGA-FS-A4FB-06 8 141874461 141874461 G A PTK2 Silent p.L134L 0.68 TCGA-FS-A4FB-06 8 23191094 23191094 G T LOXL2 Silent p.S262S 0.30 TCGA-FS-A4FB-06 8 23191095 23191095 G A LOXL2 Missense_Mutation p.S262F 0.33 deleterious(0) possibly_damaging(0.553) TCGA-FS-A4FB-06 8 24187611 24187611 G A ADAM28 Silent p.V362V 0.56 TCGA-FS-A4FB-06 8 24257733 24257733 G C ADAMDEC1 Silent p.L354L 0.32 TCGA-FS-A4FB-06 8 77765104 77765104 C T ZFHX4 Missense_Mutation p.R1983C 0.28 possibly_damaging(0.835) TCGA-FS-A4FB-06 8 82357090 82357090 C T PMP2 Missense_Mutation p.E70K 0.72 tolerated(0.16) possibly_damaging(0.583) TCGA-FS-A4FB-06 8 86240815 86240815 C T CA1 Missense_Mutation p.G254S 0.75 tolerated(0.08) possibly_damaging(0.452) TCGA-FS-A4FB-06 8 95164286 95164286 G A CDH17 Missense_Mutation p.P536S 0.18 deleterious(0) probably_damaging(0.981) TCGA-FS-A4FB-06 8 97258585 97258585 C T MTERFD1 Missense_Mutation p.D259N 0.67 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 9 125273723 125273723 C T OR1J2 Silent p.L215L 0.82 TCGA-FS-A4FB-06 9 14722348 14722348 C T CER1 Missense_Mutation p.G108E 0.72 tolerated(0.8) benign(0.019) TCGA-FS-A4FB-06 9 4572296 4572296 C G SLC1A1 Silent p.V225V 0.92 TCGA-FS-A4FB-06 9 4572341 4572341 C G SLC1A1 Missense_Mutation p.F240L 0.90 deleterious(0.05) probably_damaging(0.999) TCGA-FS-A4FB-06 X 103495237 103495237 G A ESX1 Missense_Mutation p.P298L 0.47 tolerated_low_confidence(0.13) unknown(0) TCGA-FS-A4FB-06 X 106843842 106843842 G A FRMPD3 Missense_Mutation p.R891K 0.61 tolerated_low_confidence(0.19) benign(0.16) TCGA-FS-A4FB-06 X 109698611 109698611 G A RGAG1 3'UTR 0.44 TCGA-FS-A4FB-06 X 114418999 114418999 C T LRCH2 Missense_Mutation p.G199E 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A4FB-06 X 117758535 117758535 C T DOCK11 Missense_Mutation p.P1169S 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FB-06 X 118151683 118151683 C T LONRF3 3'UTR 0.47 TCGA-FS-A4FB-06 X 120007788 120007788 C T CT47B1 Missense_Mutation p.D288N 0.45 deleterious(0.01) unknown(0) TCGA-FS-A4FB-06 X 123181208 123181208 G A STAG2 Missense_Mutation p.M224I 0.35 deleterious(0) possibly_damaging(0.844) TCGA-FS-A4FB-06 X 134856814 134856814 G A CT45A1 3'UTR 0.07 TCGA-FS-A4FB-06 X 149983391 149983391 G A CD99L2 Missense_Mutation p.A74V 0.50 tolerated(0.16) benign(0.018) TCGA-FS-A4FB-06 X 153694839 153694839 G A PLXNA3 Missense_Mutation p.E974K 0.44 tolerated(0.07) benign(0.098) TCGA-FS-A4FB-06 X 23018769 23018769 G A DDX53 Missense_Mutation p.E199K 0.31 tolerated(0.09) possibly_damaging(0.468) TCGA-FS-A4FB-06 X 3002528 3002528 C T ARSF Silent p.L217L 0.34 TCGA-FS-A4FB-06 X 3030250 3030250 G A ARSF Missense_Mutation p.V476I 0.47 tolerated(0.29) benign(0.008) TCGA-FS-A4FB-06 X 3228497 3228497 C T MXRA5 Missense_Mutation p.D2583N 0.58 deleterious(0.03) benign(0.363) TCGA-FS-A4FB-06 X 53577633 53577633 T C HUWE1 Missense_Mutation p.H3161R 0.52 benign(0.227) TCGA-FS-A4FB-06 X 70326418 70326418 C T CXorf65 5'UTR 0.46 TCGA-FS-A4FB-06 X 74648947 74648947 G A ZDHHC15 Missense_Mutation p.T190M 0.41 deleterious(0) benign(0.166) TCGA-FS-A4FC-06 10 100177399 100177399 G A HPS1 Silent p.I675I 0.17 TCGA-FS-A4FC-06 10 101473296 101473296 C T COX15 3'UTR 0.48 TCGA-FS-A4FC-06 10 113916941 113916941 G A GPAM Intron 0.19 TCGA-FS-A4FC-06 10 119013973 119013973 G A SLC18A2 Missense_Mutation p.G222E 0.22 deleterious(0) probably_damaging(0.986) TCGA-FS-A4FC-06 10 120797766 120797766 G A EIF3A Missense_Mutation p.R1238C 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-FS-A4FC-06 10 123810043 123810043 C T TACC2 Missense_Mutation p.P42S 0.20 benign(0.008) TCGA-FS-A4FC-06 10 124214296 124214296 G A ARMS2 Missense_Mutation p.G18E 0.26 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FS-A4FC-06 10 124345657 124345657 C T DMBT1 Missense_Mutation p.S514F 0.53 deleterious(0) unknown(0) TCGA-FS-A4FC-06 10 124392716 124392716 C T DMBT1 Missense_Mutation p.S2007F 0.29 tolerated(0.07) possibly_damaging(0.862) TCGA-FS-A4FC-06 10 124457349 124457349 G A C10orf120 Missense_Mutation p.S303L 0.24 deleterious(0) probably_damaging(0.975) TCGA-FS-A4FC-06 10 124459225 124459225 C T C10orf120 Missense_Mutation p.E28K 0.34 tolerated(1) benign(0.006) TCGA-FS-A4FC-06 10 1262911 1262911 G A ADARB2 Silent p.S554S 0.24 TCGA-FS-A4FC-06 10 135438806 135438806 G A FRG2B Missense_Mutation p.R212W 0.30 tolerated(0.14) benign(0.001) TCGA-FS-A4FC-06 10 24874743 24874743 G A ARHGAP21 Missense_Mutation p.S1492L 0.26 tolerated(0.19) benign(0.003) TCGA-FS-A4FC-06 10 26463190 26463190 G A MYO3A Missense_Mutation p.E1333K 0.29 tolerated_low_confidence(0.07) benign(0.015) TCGA-FS-A4FC-06 10 26785320 26785320 G A APBB1IP Missense_Mutation p.E54K 0.31 deleterious(0.03) benign(0.065) TCGA-FS-A4FC-06 10 30315607 30315607 G A KIAA1462 Missense_Mutation p.P1157L 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 10 38121734 38121734 G A ZNF248 Silent p.I183I 0.22 TCGA-FS-A4FC-06 10 3823908 3823908 G A KLF6 Missense_Mutation p.R201W 0.25 deleterious(0) unknown(0) TCGA-FS-A4FC-06 10 44052324 44052324 G A ZNF239 Missense_Mutation p.P402S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 10 46965029 46965029 G A SYT15 Missense_Mutation p.R306W 0.17 deleterious(0.04) benign(0.035) TCGA-FS-A4FC-06 10 48370500 48370500 C T ZNF488 5'UTR 0.29 TCGA-FS-A4FC-06 10 5041435 5041435 C T AKR1C2 Missense_Mutation p.G135E 0.18 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 10 50835719 50835719 G A CHAT Silent p.L333L 0.28 TCGA-FS-A4FC-06 10 55591294 55591294 C T PCDH15 Splice_Site p.X1328_splice 0.24 TCGA-FS-A4FC-06 10 61413826 61413826 C T SLC16A9 Missense_Mutation p.G320R 0.30 deleterious(0.04) probably_damaging(0.936) TCGA-FS-A4FC-06 10 61830301 61830301 C T ANK3 Nonsense_Mutation p.W3446* 0.23 TCGA-FS-A4FC-06 10 61847958 61847958 G A ANK3 Nonsense_Mutation p.Q1163* 0.26 TCGA-FS-A4FC-06 10 61946647 61946647 G A ANK3 Silent p.I637I 0.24 TCGA-FS-A4FC-06 10 63520681 63520681 G A C10orf107 Missense_Mutation p.D158N 0.31 tolerated(0.21) possibly_damaging(0.57) TCGA-FS-A4FC-06 10 64949039 64949039 T G JMJD1C Missense_Mutation p.L2153F 0.38 tolerated(0.08) benign(0.003) TCGA-FS-A4FC-06 10 7218091 7218091 G A SFMBT2 Silent p.I615I 0.27 TCGA-FS-A4FC-06 10 85985197 85985197 C T LRIT2 Missense_Mutation p.G27E 0.20 tolerated(0.09) benign(0.263) TCGA-FS-A4FC-06 10 87362404 87362404 C T GRID1 Missense_Mutation p.E886K 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-FS-A4FC-06 10 90585838 90585838 C T ANKRD22 Missense_Mutation p.R119Q 0.21 tolerated(0.2) benign(0.015) TCGA-FS-A4FC-06 10 92509065 92509065 G A HTR7 Missense_Mutation p.P276S 0.25 tolerated(0.61) benign(0.012) TCGA-FS-A4FC-06 10 95066628 95066628 G A MYOF 3'UTR 0.34 TCGA-FS-A4FC-06 11 1013972 1013972 C T MUC6 Missense_Mutation p.E2357K 0.44 unknown(0) TCGA-FS-A4FC-06 11 103124013 103124013 G A DYNC2H1 Splice_Site p.X3355_splice 0.27 TCGA-FS-A4FC-06 11 103306741 103306741 C T DYNC2H1 Missense_Mutation p.A4153V 0.48 benign(0.025) TCGA-FS-A4FC-06 11 10483118 10483118 C T AMPD3 Missense_Mutation p.R27W 0.24 deleterious(0.02) probably_damaging(0.911) TCGA-FS-A4FC-06 11 106680961 106680961 C T GUCY1A2 Missense_Mutation p.E484K 0.22 tolerated(0.07) benign(0.316) TCGA-FS-A4FC-06 11 108385329 108385333 TCCCT - EXPH5 Frame_Shift_Del p.R301Afs*5 0.40 TCGA-FS-A4FC-06 11 108409770 108409770 G A EXPH5 Missense_Mutation p.P142S 0.57 tolerated(0.15) benign(0.242) TCGA-FS-A4FC-06 11 1093735 1093735 C T MUC2 Missense_Mutation p.P1852S 0.27 unknown(0) TCGA-FS-A4FC-06 11 113673986 113673986 G A USP28 Missense_Mutation p.S919F 0.21 deleterious(0.03) benign(0.434) TCGA-FS-A4FC-06 11 116633707 116633707 G A BUD13 Missense_Mutation p.P200S 0.31 tolerated(0.82) benign(0.006) TCGA-FS-A4FC-06 11 119056239 119056239 C T PDZD3 Intron 0.72 TCGA-FS-A4FC-06 11 120322372 120322372 C T ARHGEF12 Silent p.S665S 0.20 TCGA-FS-A4FC-06 11 120769326 120769326 C T GRIK4 Missense_Mutation p.T417I 0.17 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 11 123777273 123777273 G A OR8D4 Missense_Mutation p.M45I 0.28 deleterious(0.04) probably_damaging(0.985) TCGA-FS-A4FC-06 11 124489198 124489198 G A PANX3 Silent p.R182R 0.24 TCGA-FS-A4FC-06 11 130784838 130784838 G A SNX19 Missense_Mutation p.H333Y 0.22 tolerated(0.37) benign(0.002) TCGA-FS-A4FC-06 11 132527054 132527054 C T OPCML Missense_Mutation p.E110K 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 11 134212670 134212670 C T GLB1L2 Missense_Mutation p.P37S 0.27 deleterious(0.04) benign(0.128) TCGA-FS-A4FC-06 11 134253616 134253616 G A B3GAT1 Silent p.F193F 0.57 TCGA-FS-A4FC-06 11 15134028 15134028 C T INSC Missense_Mutation p.P5S 0.40 tolerated_low_confidence(0.25) benign(0) TCGA-FS-A4FC-06 11 1629578 1629578 C T KRTAP5-3 Missense_Mutation p.S13N 0.30 deleterious_low_confidence(0) unknown(0) TCGA-FS-A4FC-06 11 17415849 17415849 G A ABCC8 Silent p.I1503I 0.29 TCGA-FS-A4FC-06 11 17464352 17464352 C T ABCC8 Silent p.E515E 0.25 TCGA-FS-A4FC-06 11 17496568 17496568 C T ABCC8 Missense_Mutation p.G52E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FC-06 11 20005705 20005705 C T NAV2 Missense_Mutation p.R917C 0.25 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 11 22399123 22399123 G A SLC17A6 Missense_Mutation p.G529E 0.19 tolerated(1) benign(0.001) TCGA-FS-A4FC-06 11 22647386 22647386 C T FANCF 5'UTR 0.35 TCGA-FS-A4FC-06 11 233184 233184 G A SIRT3 Nonsense_Mutation p.Q169* 0.29 TCGA-FS-A4FC-06 11 27147251 27147251 G A BBOX1 Missense_Mutation p.R296K 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-FS-A4FC-06 11 27406903 27406903 G A LGR4 Missense_Mutation p.P172S 0.30 tolerated(0.14) benign(0.304) TCGA-FS-A4FC-06 11 31099465 31099465 C T DCDC1 Missense_Mutation p.G749R 0.38 deleterious(0) probably_damaging(0.976) TCGA-FS-A4FC-06 11 33053943 33053943 C T DEPDC7 Silent p.F352F 0.31 TCGA-FS-A4FC-06 11 33768661 33768661 G A FBXO3 Intron 0.23 TCGA-FS-A4FC-06 11 34475465 34475465 C T CAT Missense_Mutation p.H235Y 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-FS-A4FC-06 11 5068238 5068238 G A OR52J3 Missense_Mutation p.M161I 0.17 tolerated(0.25) benign(0.004) TCGA-FS-A4FC-06 11 51516200 51516200 G A OR4C46 Missense_Mutation p.G307S 0.27 tolerated_low_confidence(0.73) benign(0.004) TCGA-FS-A4FC-06 11 533336 533336 G A HRAS Intron 0.24 TCGA-FS-A4FC-06 11 5364133 5364133 C T OR51B5 Missense_Mutation p.D208N 0.25 deleterious(0.02) possibly_damaging(0.896) TCGA-FS-A4FC-06 11 5364783 5364783 C T OR51B5 5'UTR 0.29 TCGA-FS-A4FC-06 11 5462631 5462631 C T OR51I1 Missense_Mutation p.M38I 0.27 tolerated(0.76) benign(0.005) TCGA-FS-A4FC-06 11 56019909 56019909 G A OR5T3 Silent p.L78L 0.28 TCGA-FS-A4FC-06 11 56085954 56085954 C T OR8K3 Missense_Mutation p.P58S 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.524) TCGA-FS-A4FC-06 11 56185601 56185601 C T OR5R1 Silent p.L36L 0.22 TCGA-FS-A4FC-06 11 56344629 56344629 G A OR5M10 Missense_Mutation p.S190F 0.25 deleterious(0) probably_damaging(0.945) TCGA-FS-A4FC-06 11 56409143 56409143 A T OR5AP2 Missense_Mutation p.F258Y 0.27 tolerated(1) probably_damaging(0.999) TCGA-FS-A4FC-06 11 56431178 56431178 G A OR5AR1 Missense_Mutation p.S6N 0.24 tolerated(0.31) benign(0) TCGA-FS-A4FC-06 11 5719637 5719637 G A TRIM22 Silent p.K204K 0.26 TCGA-FS-A4FC-06 11 5799452 5799452 G A OR52N5 Missense_Mutation p.P138L 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 11 5878768 5878768 G A OR52E8 Silent p.I55I 0.33 TCGA-FS-A4FC-06 11 5905804 5905804 C T OR52E4 Silent p.I94I 0.24 TCGA-FS-A4FC-06 11 5905934 5905934 C T OR52E4 Missense_Mutation p.L138F 0.20 deleterious(0.02) probably_damaging(0.974) TCGA-FS-A4FC-06 11 6007701 6007701 G A OR52L1 Silent p.L154L 0.26 TCGA-FS-A4FC-06 11 60704807 60704807 G A SLC15A3 Silent p.L544L 0.38 TCGA-FS-A4FC-06 11 60781435 60781435 C T CD6 Missense_Mutation p.P446S 0.22 deleterious(0.01) benign(0.338) TCGA-FS-A4FC-06 11 61511583 61511583 C T DAGLA Silent p.I917I 0.30 TCGA-FS-A4FC-06 11 617491 617491 C T CDHR5 Missense_Mutation p.E800K 0.24 tolerated(0.09) benign(0.225) TCGA-FS-A4FC-06 11 62010915 62010915 C T SCGB1D2 Silent p.S70S 0.28 TCGA-FS-A4FC-06 11 62302497 62302497 G A AHNAK Missense_Mutation p.S107F 0.29 benign(0.211) TCGA-FS-A4FC-06 11 62327225 62327225 G A EEF1G Nonsense_Mutation p.R414* 0.32 TCGA-FS-A4FC-06 11 63669730 63669730 G T MARK2 Missense_Mutation p.A388S 0.25 tolerated(1) possibly_damaging(0.715) TCGA-FS-A4FC-06 11 64083425 64083425 C T ESRRA Missense_Mutation p.A420V 0.19 deleterious(0) possibly_damaging(0.677) TCGA-FS-A4FC-06 11 64521012 64521012 G A PYGM Missense_Mutation p.S461F 0.22 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FC-06 11 64595015 64595015 G A CDC42BPG Silent p.L1378L 0.30 TCGA-FS-A4FC-06 11 64825364 64825364 G A NAALADL1 Missense_Mutation p.P155S 0.22 deleterious(0.01) possibly_damaging(0.876) TCGA-FS-A4FC-06 11 65294435 65294435 C T SCYL1 Silent p.I232I 0.16 TCGA-FS-A4FC-06 11 65318931 65318931 C T LTBP3 Silent p.E521E 0.23 TCGA-FS-A4FC-06 11 6638550 6638550 C G TPP1 Missense_Mutation p.A164P 0.24 tolerated(0.09) possibly_damaging(0.605) TCGA-FS-A4FC-06 11 68337239 68337239 G A PPP6R3 Nonsense_Mutation p.W384* 0.59 TCGA-FS-A4FC-06 11 69482731 69482731 G A ORAOV1 Missense_Mutation p.P93S 0.32 deleterious(0.03) probably_damaging(0.927) TCGA-FS-A4FC-06 11 70332969 70332969 G A SHANK2 Silent p.S1144S 0.62 TCGA-FS-A4FC-06 11 73066682 73066682 C T ARHGEF17 Silent p.L1186L 0.24 TCGA-FS-A4FC-06 11 7817731 7817731 G A OR5P2 Silent p.F253F 0.33 TCGA-FS-A4FC-06 11 86518920 86518920 G A PRSS23 Missense_Mutation p.E79K 0.29 tolerated(0.3) benign(0.012) TCGA-FS-A4FC-06 11 89537256 89537256 G A TRIM49 Missense_Mutation p.P128S 0.10 tolerated(0.77) possibly_damaging(0.764) TCGA-FS-A4FC-06 11 92088437 92088437 G A FAT3 Silent p.K1053K 0.57 TCGA-FS-A4FC-06 11 92531727 92531727 C T FAT3 Missense_Mutation p.H1850Y 0.33 probably_damaging(0.985) TCGA-FS-A4FC-06 11 92532485 92532485 G A FAT3 Silent p.L2102L 0.67 TCGA-FS-A4FC-06 11 93118658 93118658 G A CCDC67 Missense_Mutation p.R295K 0.22 tolerated(1) benign(0.018) TCGA-FS-A4FC-06 12 101490417 101490417 C T ANO4 Silent p.F579F 0.26 TCGA-FS-A4FC-06 12 104092971 104092971 C T STAB2 Missense_Mutation p.S1227F 0.28 deleterious(0) probably_damaging(0.984) TCGA-FS-A4FC-06 12 107125916 107125916 C T RFX4 Missense_Mutation p.H463Y 0.20 deleterious(0) probably_damaging(0.961) TCGA-FS-A4FC-06 12 108011981 108011981 G A BTBD11 Missense_Mutation p.D760N 0.18 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FC-06 12 109309580 109309580 G A SVOP Silent p.L408L 0.17 TCGA-FS-A4FC-06 12 11090894 11090894 C T TAS2R14 Missense_Mutation p.G305R 0.33 tolerated(0.46) benign(0.008) TCGA-FS-A4FC-06 12 111779807 111779807 C T CUX2 Silent p.F1203F 0.21 TCGA-FS-A4FC-06 12 112926922 112926922 C T PTPN11 Silent p.I514I 0.29 TCGA-FS-A4FC-06 12 113346562 113346562 C T OAS1 Silent p.F134F 0.29 TCGA-FS-A4FC-06 12 1137706 1137706 G A ERC1 Missense_Mutation p.E213K 0.25 deleterious(0) probably_damaging(0.93) TCGA-FS-A4FC-06 12 118517363 118517363 G A VSIG10 Missense_Mutation p.S238L 0.21 tolerated(0.77) benign(0.009) TCGA-FS-A4FC-06 12 121858580 121858580 C T RNF34 Silent p.S310S 0.24 TCGA-FS-A4FC-06 12 123490021 123490021 C T PITPNM2 Missense_Mutation p.E240K 0.24 deleterious(0.01) possibly_damaging(0.559) TCGA-FS-A4FC-06 12 126004025 126004025 G A TMEM132B Missense_Mutation p.G378R 0.31 deleterious(0.01) benign(0.394) TCGA-FS-A4FC-06 12 129373189 129373189 C T GLT1D1 Nonsense_Mutation p.R75* 0.12 TCGA-FS-A4FC-06 12 18876370 18876370 G A PLCZ1 Missense_Mutation p.S81F 0.32 deleterious(0) probably_damaging(0.963) TCGA-FS-A4FC-06 12 18876418 18876418 C T PLCZ1 Missense_Mutation p.R65Q 0.29 tolerated(0.07) possibly_damaging(0.554) TCGA-FS-A4FC-06 12 2229562 2229562 C T CACNA1C Missense_Mutation p.P148L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 12 2690858 2690858 C T CACNA1C Silent p.S666S 0.44 TCGA-FS-A4FC-06 12 31552616 31552616 T G DENND5B Silent p.R1014R 0.18 TCGA-FS-A4FC-06 12 31552617 31552617 G A DENND5B Silent p.V1013V 0.18 TCGA-FS-A4FC-06 12 41330674 41330674 C G CNTN1 Missense_Mutation p.I359M 0.26 tolerated(0.09) possibly_damaging(0.579) TCGA-FS-A4FC-06 12 44917198 44917198 C T NELL2 Missense_Mutation p.G675E 0.26 deleterious(0) probably_damaging(0.987) TCGA-FS-A4FC-06 12 4609466 4609466 G A C12orf4 Silent p.I426I 0.29 TCGA-FS-A4FC-06 12 46230571 46230571 C T ARID2 Nonsense_Mutation p.R274* 0.38 TCGA-FS-A4FC-06 12 46244787 46244787 C T ARID2 Nonsense_Mutation p.Q961* 0.21 TCGA-FS-A4FC-06 12 46245442 46245442 A T ARID2 Missense_Mutation p.N1179I 0.25 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-FS-A4FC-06 12 47186920 47186920 C T SLC38A4 5'UTR 0.22 TCGA-FS-A4FC-06 12 53185099 53185099 C A KRT3 Missense_Mutation p.D476Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 12 53207919 53207919 C T KRT4 5'UTR 0.29 TCGA-FS-A4FC-06 12 55524325 55524325 G A OR9K2 Missense_Mutation p.G258E 0.31 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 12 55795218 55795218 C T OR6C65 Silent p.F302F 0.30 TCGA-FS-A4FC-06 12 55863664 55863664 C T OR6C70 Missense_Mutation p.E87K 0.25 deleterious_low_confidence(0.03) benign(0.003) TCGA-FS-A4FC-06 12 55945062 55945062 C T OR6C4 Nonsense_Mutation p.Q18* 0.25 TCGA-FS-A4FC-06 12 56114942 56114942 C T RDH5 5'UTR 0.38 TCGA-FS-A4FC-06 12 56137491 56137491 G A GDF11 Missense_Mutation p.E131K 0.28 deleterious(0.01) possibly_damaging(0.507) TCGA-FS-A4FC-06 12 56578824 56578824 G A SMARCC2 Missense_Mutation p.S130F 0.29 deleterious(0.01) possibly_damaging(0.485) TCGA-FS-A4FC-06 12 56814369 56814369 G A TIMELESS Missense_Mutation p.P1071L 0.25 deleterious(0) possibly_damaging(0.864) TCGA-FS-A4FC-06 12 57345911 57345911 C T RDH16 Missense_Mutation p.D286N 0.35 deleterious(0.02) probably_damaging(0.979) TCGA-FS-A4FC-06 12 57650227 57650227 G A R3HDM2 Silent p.L825L 0.32 TCGA-FS-A4FC-06 12 64377648 64377648 C T SRGAP1 Intron 0.21 TCGA-FS-A4FC-06 12 66932940 66932940 G A GRIP1 Silent p.F112F 0.27 TCGA-FS-A4FC-06 12 67698438 67698438 G C CAND1 Missense_Mutation p.K449N 0.34 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 12 70946726 70946726 G A PTPRB Missense_Mutation p.R1740W 0.29 deleterious(0) probably_damaging(0.924) TCGA-FS-A4FC-06 12 71950406 71950406 C T LGR5 Missense_Mutation p.H218Y 0.22 deleterious(0) benign(0.153) TCGA-FS-A4FC-06 12 75434908 75434908 C T KCNC2 3'UTR 0.26 TCGA-FS-A4FC-06 12 7640125 7640125 C T CD163 Missense_Mutation p.G627E 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 12 78444801 78444801 C T NAV3 Missense_Mutation p.S797L 0.31 tolerated(0.11) benign(0.167) TCGA-FS-A4FC-06 12 78604228 78604228 A T NAV3 Missense_Mutation p.Q2341H 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4FC-06 12 8374449 8374449 G A FAM90A1 Missense_Mutation p.S455F 0.26 deleterious(0) unknown(0) TCGA-FS-A4FC-06 12 8374849 8374849 C T FAM90A1 Missense_Mutation p.G322R 0.33 tolerated(0.45) benign(0.202) TCGA-FS-A4FC-06 12 9021761 9021761 G A A2ML1 Missense_Mutation p.E1395K 0.27 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 12 9243864 9243864 G A A2M Missense_Mutation p.S801F 0.19 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 12 93100989 93100989 C T C12orf74 Intron 0.25 TCGA-FS-A4FC-06 12 93131273 93131273 G A PLEKHG7 5'UTR 0.25 TCGA-FS-A4FC-06 12 95911898 95911898 A T USP44 3'UTR 0.26 TCGA-FS-A4FC-06 13 111138100 111138100 C T COL4A2 Missense_Mutation p.P1042S 0.33 possibly_damaging(0.876) TCGA-FS-A4FC-06 13 23907842 23907842 G T SACS Missense_Mutation p.F3391L 0.27 probably_damaging(0.965) TCGA-FS-A4FC-06 13 29041173 29041173 G C FLT1 Silent p.G85G 0.26 TCGA-FS-A4FC-06 13 33634975 33634975 G A KL Missense_Mutation p.E587K 0.27 tolerated(0.77) benign(0.006) TCGA-FS-A4FC-06 13 37011993 37011993 C T CCNA1 Silent p.F175F 0.30 TCGA-FS-A4FC-06 13 38154822 38154822 C T POSTN Missense_Mutation p.E469K 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 13 43362867 43362881 CCTGTATCTGTGGTT - FAM216B In_Frame_Del p.P121_V125del 0.18 TCGA-FS-A4FC-06 13 49885024 49885024 C T CAB39L Missense_Mutation p.D314N 0.28 tolerated(0.07) benign(0.159) TCGA-FS-A4FC-06 13 72147103 72147103 G A DACH1 Missense_Mutation p.P392S 0.29 possibly_damaging(0.885) TCGA-FS-A4FC-06 13 76423318 76423318 C T LMO7 Silent p.I1185I 0.33 TCGA-FS-A4FC-06 14 20483063 20483063 C T OR4K14 Missense_Mutation p.G97E 0.29 deleterious(0.01) possibly_damaging(0.482) TCGA-FS-A4FC-06 14 20502829 20502829 C T OR4K13 Missense_Mutation p.G30E 0.36 deleterious(0.04) benign(0.119) TCGA-FS-A4FC-06 14 21796666 21796666 G A RPGRIP1 Silent p.K993K 0.31 TCGA-FS-A4FC-06 14 22134091 22134091 C T OR4E2 Silent p.F265F 0.25 TCGA-FS-A4FC-06 14 22321169 22321169 C T TRAV8-3 Silent p.F109F 0.25 TCGA-FS-A4FC-06 14 23858602 23858602 C T MYH6 Silent p.K1326K 0.23 TCGA-FS-A4FC-06 14 31348049 31348049 G A COCH Missense_Mutation p.R91Q 0.28 tolerated(0.35) benign(0.35) TCGA-FS-A4FC-06 14 55251330 55251330 C T SAMD4A Missense_Mutation p.A707V 0.19 deleterious(0) probably_damaging(0.997) TCGA-FS-A4FC-06 14 56125297 56125297 C T KTN1 Nonsense_Mutation p.Q976* 0.26 TCGA-FS-A4FC-06 14 57114282 57114282 C T TMEM260 3'UTR 0.22 TCGA-FS-A4FC-06 14 62462739 62462739 T G SYT16 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) possibly_damaging(0.47) TCGA-FS-A4FC-06 14 62462784 62462784 C T SYT16 Missense_Mutation p.P16L 0.31 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-FS-A4FC-06 14 65197525 65197525 C T PLEKHG3 Missense_Mutation p.A136V 0.20 deleterious(0) possibly_damaging(0.85) TCGA-FS-A4FC-06 14 65266531 65266531 G A SPTB Missense_Mutation p.S333L 0.21 deleterious(0) probably_damaging(0.99) TCGA-FS-A4FC-06 14 73406578 73406578 C T DCAF4 Missense_Mutation p.S54L 0.47 deleterious(0) possibly_damaging(0.509) TCGA-FS-A4FC-06 14 73721590 73721590 C T PAPLN Silent p.S470S 0.24 TCGA-FS-A4FC-06 14 75375609 75375609 C T RPS6KL1 Missense_Mutation p.E463K 0.27 deleterious(0.01) probably_damaging(0.914) TCGA-FS-A4FC-06 14 88729587 88729587 G A KCNK10 Missense_Mutation p.H121Y 0.33 tolerated(0.27) possibly_damaging(0.719) TCGA-FS-A4FC-06 14 90730042 90730042 C T PSMC1 Missense_Mutation p.P106S 0.23 deleterious(0.02) benign(0.162) TCGA-FS-A4FC-06 14 91774779 91774779 C T CCDC88C Missense_Mutation p.M974I 0.34 tolerated(1) benign(0.001) TCGA-FS-A4FC-06 14 92174530 92174530 G A CATSPERB Silent p.L141L 0.31 TCGA-FS-A4FC-06 14 92922828 92922828 G A SLC24A4 Silent p.G377G 0.26 TCGA-FS-A4FC-06 14 94756472 94756472 G A SERPINA10 Silent p.S153S 0.21 TCGA-FS-A4FC-06 14 94756473 94756473 G A SERPINA10 Missense_Mutation p.S153F 0.20 tolerated(0.06) benign(0.098) TCGA-FS-A4FC-06 14 94844815 94844815 C T SERPINA1 Missense_Mutation p.G410R 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 15 100332276 100332276 G A AC090825.1 5'Flank 0.21 TCGA-FS-A4FC-06 15 20496610 20496610 G A CHEK2P2 RNA 0.15 TCGA-FS-A4FC-06 15 25419986 25419986 C T SNORD115-3 5'Flank 0.30 TCGA-FS-A4FC-06 15 27572012 27572012 C T GABRG3 Silent p.F109F 0.24 TCGA-FS-A4FC-06 15 27778021 27778021 T A GABRG3 Nonsense_Mutation p.Y466* 0.33 TCGA-FS-A4FC-06 15 27778022 27778022 C A GABRG3 Missense_Mutation p.L467I 0.31 deleterious(0) probably_damaging(0.984) TCGA-FS-A4FC-06 15 30009039 30009039 G A TJP1 Silent p.I1326I 0.22 TCGA-FS-A4FC-06 15 30665323 30665323 G A CHRFAM7A Silent p.I62I 0.27 TCGA-FS-A4FC-06 15 34356258 34356258 T C CHRM5 Missense_Mutation p.I447T 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 15 34543105 34543105 A C SLC12A6 Missense_Mutation p.V496G 0.23 deleterious(0) possibly_damaging(0.85) TCGA-FS-A4FC-06 15 35830584 35830584 G A DPH6 Missense_Mutation p.P68L 0.28 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 15 39544514 39544514 G A C15orf54 Missense_Mutation p.E60K 0.29 tolerated_low_confidence(0.17) benign(0.444) TCGA-FS-A4FC-06 15 41571573 41571573 C T CHP1 Nonsense_Mutation p.R192* 0.33 TCGA-FS-A4FC-06 15 42279460 42279460 G A PLA2G4E Missense_Mutation p.R649W 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 15 43269007 43269007 G A UBR1 Missense_Mutation p.P1426L 0.26 tolerated(0.11) probably_damaging(0.995) TCGA-FS-A4FC-06 15 45387155 45387155 G A DUOX2 Silent p.F1458F 0.26 TCGA-FS-A4FC-06 15 49309166 49309166 G A SECISBP2L Missense_Mutation p.P433L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 15 50152238 50152238 G A ATP8B4 3'UTR 0.52 TCGA-FS-A4FC-06 15 51757773 51757773 C T DMXL2 Silent p.L2532L 0.22 TCGA-FS-A4FC-06 15 51778369 51778369 G A DMXL2 Missense_Mutation p.P1795S 0.26 deleterious(0) probably_damaging(0.959) TCGA-FS-A4FC-06 15 58256196 58256196 G A ALDH1A2 Missense_Mutation p.R325C 0.31 deleterious(0) probably_damaging(0.97) TCGA-FS-A4FC-06 15 63125690 63125690 C T TLN2 Intron 0.25 TCGA-FS-A4FC-06 15 65489554 65489554 G A CILP Silent p.L1024L 0.27 TCGA-FS-A4FC-06 15 67553656 67553656 C T IQCH Missense_Mutation p.S33L 0.29 tolerated(0.27) benign(0.295) TCGA-FS-A4FC-06 15 69320665 69320665 G A NOX5 Missense_Mutation p.M95I 0.29 tolerated(0.18) benign(0.017) TCGA-FS-A4FC-06 15 73832829 73832829 G A C15orf60 Missense_Mutation p.G85R 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 15 74836254 74836254 C T ARID3B 5'UTR 0.24 TCGA-FS-A4FC-06 15 76797204 76797204 G A SCAPER Missense_Mutation p.P984S 0.38 tolerated(0.77) benign(0.283) TCGA-FS-A4FC-06 15 78401636 78401636 G A CIB2 Missense_Mutation p.S96F 0.21 deleterious(0) probably_damaging(0.957) TCGA-FS-A4FC-06 15 93563530 93563530 A T CHD2 Intron 0.24 TCGA-FS-A4FC-06 15 94841674 94841674 C T MCTP2 Silent p.A60A 0.25 TCGA-FS-A4FC-06 16 12009902 12009902 C T GSPT1 5'Flank 0.31 TCGA-FS-A4FC-06 16 12009904 12009904 C T GSPT1 5'Flank 0.31 TCGA-FS-A4FC-06 16 14307405 14307405 G A MKL2 Missense_Mutation p.E94K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 16 1820925 1820925 G A NME3 Missense_Mutation p.P117S 0.29 tolerated(0.44) benign(0) TCGA-FS-A4FC-06 16 20476979 20476979 G A ACSM2A Silent p.G106G 0.24 TCGA-FS-A4FC-06 16 20791874 20791874 G A ACSM3 Intron 0.28 TCGA-FS-A4FC-06 16 20810648 20810648 G A ERI2 Silent p.A223A 0.28 TCGA-FS-A4FC-06 16 21038411 21038411 G A DNAH3 Silent p.S1826S 0.24 TCGA-FS-A4FC-06 16 2139840 2139840 C T PKD1 Missense_Mutation p.R4267Q 0.33 benign(0.001) TCGA-FS-A4FC-06 16 22343421 22343421 G A POLR3E Missense_Mutation p.R662Q 0.29 deleterious(0.01) possibly_damaging(0.716) TCGA-FS-A4FC-06 16 22826270 22826270 G A HS3ST2 Silent p.R113R 0.50 TCGA-FS-A4FC-06 16 23713503 23713503 C T ERN2 Silent p.E439E 0.36 TCGA-FS-A4FC-06 16 28843876 28843876 A C ATXN2L Missense_Mutation p.I526L 0.31 tolerated(0.66) benign(0.015) TCGA-FS-A4FC-06 16 29115563 29115563 G T CTB-134H23.3 RNA 0.34 TCGA-FS-A4FC-06 16 29989070 29989070 C T TAOK2 5'UTR 0.21 TCGA-FS-A4FC-06 16 31341880 31341880 C T ITGAM Missense_Mutation p.S1078F 0.32 deleterious(0) probably_damaging(0.955) TCGA-FS-A4FC-06 16 31367975 31367975 C A ITGAX Missense_Mutation p.T58K 0.30 tolerated(1) benign(0) TCGA-FS-A4FC-06 16 3255043 3255043 A C OR1F1 Missense_Mutation p.H266P 0.30 deleterious(0) probably_damaging(0.953) TCGA-FS-A4FC-06 16 3598685 3598685 G T NLRC3 Missense_Mutation p.T937N 0.30 deleterious(0.01) benign(0.13) TCGA-FS-A4FC-06 16 5041932 5041932 G A SEC14L5 Missense_Mutation p.D190N 0.25 tolerated(0.34) benign(0.004) TCGA-FS-A4FC-06 16 57238576 57238576 C T RSPRY1 Silent p.I2I 0.30 TCGA-FS-A4FC-06 16 58542880 58542880 C T NDRG4 Silent p.S300S 0.26 TCGA-FS-A4FC-06 16 58573698 58573698 T A CNOT1 Missense_Mutation p.I1656L 0.33 tolerated(0.42) benign(0.002) TCGA-FS-A4FC-06 16 615050 615050 C A C16orf11 Missense_Mutation p.P487T 0.29 deleterious(0.03) benign(0.284) TCGA-FS-A4FC-06 16 61761046 61761046 G A CDH8 Silent p.F496F 0.30 TCGA-FS-A4FC-06 16 67313980 67313980 C T PLEKHG4 Silent p.S11S 0.26 TCGA-FS-A4FC-06 16 67432757 67432757 G A ZDHHC1 Silent p.N207N 0.11 TCGA-FS-A4FC-06 16 68404800 68404800 C T SMPD3 Missense_Mutation p.D429N 0.29 tolerated(0.05) benign(0.003) TCGA-FS-A4FC-06 16 69493023 69493027 AGGTT - CYB5B Splice_Site p.X121_splice 0.26 TCGA-FS-A4FC-06 16 70551549 70551549 G A COG4 Missense_Mutation p.R117C 0.33 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 16 70908496 70908496 C T HYDIN Splice_Site p.X3554_splice 0.16 TCGA-FS-A4FC-06 16 70954741 70954741 C T HYDIN Missense_Mutation p.R2513K 0.53 possibly_damaging(0.567) TCGA-FS-A4FC-06 16 71065576 71065576 C T HYDIN Intron 0.28 TCGA-FS-A4FC-06 16 716084 716084 C T WDR90 Silent p.P1523P 0.21 TCGA-FS-A4FC-06 16 716085 716085 C T WDR90 Missense_Mutation p.H1524Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-FS-A4FC-06 16 71663283 71663283 G A MARVELD3 Missense_Mutation p.E161K 0.24 deleterious(0.03) benign(0.21) TCGA-FS-A4FC-06 16 72153752 72153752 G A PMFBP1 Missense_Mutation p.P1002L 0.26 deleterious_low_confidence(0.01) benign(0.315) TCGA-FS-A4FC-06 16 736958 736958 C T WDR24 Missense_Mutation p.R373Q 0.38 tolerated(0.06) possibly_damaging(0.86) TCGA-FS-A4FC-06 16 815554 815554 G A MSLN Silent p.T244T 0.13 TCGA-FS-A4FC-06 16 84163956 84163956 C T HSDL1 Missense_Mutation p.E101K 0.27 tolerated(1) benign(0.002) TCGA-FS-A4FC-06 16 85106555 85106555 G A KIAA0513 Missense_Mutation p.E152K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FC-06 16 87960436 87960436 G A CA5A Silent p.S86S 0.28 TCGA-FS-A4FC-06 16 88694027 88694027 C T ZC3H18 Intron 0.29 TCGA-FS-A4FC-06 16 9928059 9928059 C T GRIN2A Missense_Mutation p.M560I 0.24 deleterious(0.01) benign(0.301) TCGA-FS-A4FC-06 17 10261117 10261117 C T MYH13 Missense_Mutation p.A225T 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-FS-A4FC-06 17 10356147 10356147 C T MYH4 Missense_Mutation p.D1072N 0.30 tolerated(0.06) probably_damaging(1) TCGA-FS-A4FC-06 17 10426925 10426925 C T MYH2 Missense_Mutation p.R1787Q 0.25 deleterious(0) probably_damaging(0.969) TCGA-FS-A4FC-06 17 10432554 10432554 G A MYH2 Silent p.I1093I 0.35 TCGA-FS-A4FC-06 17 11666900 11666900 G T DNAH9 Missense_Mutation p.W2380L 0.34 probably_damaging(0.993) TCGA-FS-A4FC-06 17 15516110 15516110 T C RP11-385D13.1 Missense_Mutation p.N653D 0.33 tolerated_low_confidence(0.06) benign(0.418) TCGA-FS-A4FC-06 17 18004859 18004859 C T DRG2 Silent p.F228F 0.36 TCGA-FS-A4FC-06 17 19651669 19651669 G A ALDH3A1 5'Flank 0.16 TCGA-FS-A4FC-06 17 1968969 1968969 G A SMG6 Silent p.I1280I 0.26 TCGA-FS-A4FC-06 17 2894668 2894668 G A RAP1GAP2 Silent p.T297T 0.43 TCGA-FS-A4FC-06 17 3324774 3324774 G A OR3A3 Missense_Mutation p.D305N 0.24 deleterious(0.01) probably_damaging(0.917) TCGA-FS-A4FC-06 17 33477071 33477071 C T UNC45B Silent p.I70I 0.25 TCGA-FS-A4FC-06 17 33680005 33680005 C T SLFN11 Silent p.K692K 0.26 TCGA-FS-A4FC-06 17 35797857 35797857 C T TADA2A Missense_Mutation p.L71F 0.29 tolerated(0.93) benign(0.08) TCGA-FS-A4FC-06 17 3643120 3643120 T A ITGAE Missense_Mutation p.Q834L 0.25 tolerated(0.11) possibly_damaging(0.88) TCGA-FS-A4FC-06 17 36993474 36993474 C T C17orf98 Missense_Mutation p.R76K 0.20 tolerated(0.28) benign(0.273) TCGA-FS-A4FC-06 17 37368603 37368603 C T STAC2 Missense_Mutation p.R393H 0.24 deleterious(0) possibly_damaging(0.542) TCGA-FS-A4FC-06 17 37417768 37417768 G A FBXL20 Missense_Mutation p.P419L 0.28 deleterious(0.02) possibly_damaging(0.583) TCGA-FS-A4FC-06 17 39081698 39081698 C T KRT23 Silent p.Q350Q 0.32 TCGA-FS-A4FC-06 17 39723916 39723916 C T KRT9 Missense_Mutation p.G494E 0.23 tolerated_low_confidence(0.54) unknown(0) TCGA-FS-A4FC-06 17 4047155 4047155 C T CYB5D2 Missense_Mutation p.R36C 0.32 deleterious(0) probably_damaging(0.972) TCGA-FS-A4FC-06 17 41926210 41926210 G A CD300LG Missense_Mutation p.E110K 0.25 tolerated(0.84) benign(0.01) TCGA-FS-A4FC-06 17 4442587 4442587 C A MYBBP1A Intron 0.26 TCGA-FS-A4FC-06 17 45367134 45367134 C T ITGB3 Missense_Mutation p.L343F 0.26 tolerated(0.05) probably_damaging(0.989) TCGA-FS-A4FC-06 17 45369764 45369764 C T ITGB3 Missense_Mutation p.S507F 0.30 deleterious(0.04) possibly_damaging(0.54) TCGA-FS-A4FC-06 17 45419399 45419399 G A EFCAB13 Splice_Site p.X101_splice 0.36 TCGA-FS-A4FC-06 17 46058647 46058647 C T CDK5RAP3 Silent p.L468L 0.30 TCGA-FS-A4FC-06 17 46804144 46804144 G A HOXB13 3'UTR 0.20 TCGA-FS-A4FC-06 17 47246260 47246260 C T B4GALNT2 Missense_Mutation p.S498L 0.19 tolerated(0.4) benign(0.008) TCGA-FS-A4FC-06 17 4841164 4841164 C T SLC25A11 Missense_Mutation p.E273K 0.33 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 17 48628176 48628176 C T SPATA20 Silent p.L427L 0.25 TCGA-FS-A4FC-06 17 48650043 48650043 G A CACNA1G Missense_Mutation p.G292E 0.40 deleterious(0.02) possibly_damaging(0.573) TCGA-FS-A4FC-06 17 55072876 55072876 C T SCPEP1 Silent p.L222L 0.25 TCGA-FS-A4FC-06 17 56342326 56342326 G A LPO Missense_Mutation p.V504I 0.19 tolerated(0.48) benign(0.12) TCGA-FS-A4FC-06 17 56435408 56435408 G A RNF43 Nonsense_Mutation p.Q577* 0.22 TCGA-FS-A4FC-06 17 59668251 59668251 C T NACA2 Nonsense_Mutation p.W97* 0.30 TCGA-FS-A4FC-06 17 60689771 60689771 T C TLK2 Silent p.L700L 0.36 TCGA-FS-A4FC-06 17 61559949 61559949 C T ACE Missense_Mutation p.P414L 0.23 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 17 65908912 65908912 C T BPTF Missense_Mutation p.P1638S 0.27 probably_damaging(0.999) TCGA-FS-A4FC-06 17 7100290 7100290 G A DLG4 Missense_Mutation p.S333F 0.13 deleterious(0.01) benign(0.233) TCGA-FS-A4FC-06 17 74077385 74077385 G A ZACN Missense_Mutation p.V191M 0.31 deleterious(0.04) benign(0.367) TCGA-FS-A4FC-06 17 7658066 7658066 C T DNAH2 Intron 0.26 TCGA-FS-A4FC-06 17 7695570 7695570 G A DNAH2 Missense_Mutation p.D2352N 0.21 probably_damaging(0.983) TCGA-FS-A4FC-06 17 7736843 7736843 G A DNAH2 Missense_Mutation p.D4426N 0.21 probably_damaging(0.998) TCGA-FS-A4FC-06 17 79410080 79410080 C T RP11-1055B8.7 Silent p.L569L 0.36 TCGA-FS-A4FC-06 17 79414164 79414164 C T RP11-1055B8.7 Missense_Mutation p.T1089I 0.21 benign(0.045) TCGA-FS-A4FC-06 17 79556066 79556066 G A NPLOC4 Silent p.V395V 0.24 TCGA-FS-A4FC-06 17 9792763 9792763 G A GLP2R Missense_Mutation p.G468E 0.34 tolerated(0.44) benign(0.01) TCGA-FS-A4FC-06 18 10696118 10696118 C T PIEZO2 Missense_Mutation p.G2269R 0.32 deleterious(0) possibly_damaging(0.74) TCGA-FS-A4FC-06 18 21330956 21330956 C T LAMA3 Silent p.T253T 0.26 TCGA-FS-A4FC-06 18 21501012 21501012 C T LAMA3 Silent p.D2679D 0.25 TCGA-FS-A4FC-06 18 2566951 2566951 G T METTL4 Silent p.R89R 0.26 TCGA-FS-A4FC-06 18 28576937 28576937 C T DSC3 Missense_Mutation p.M771I 0.26 tolerated(0.59) benign(0.001) TCGA-FS-A4FC-06 18 29056140 29056140 C T DSG3 Missense_Mutation p.P973S 0.26 tolerated(0.43) benign(0.004) TCGA-FS-A4FC-06 18 29340039 29340039 G A SLC25A52 Missense_Mutation p.P206S 0.22 tolerated(0.07) benign(0.09) TCGA-FS-A4FC-06 18 31324664 31324664 G A ASXL3 Missense_Mutation p.G1618R 0.46 possibly_damaging(0.55) TCGA-FS-A4FC-06 18 31538286 31538286 C T NOL4 Missense_Mutation p.E385K 0.25 deleterious(0) possibly_damaging(0.646) TCGA-FS-A4FC-06 18 31685104 31685104 G A NOL4 Silent p.F145F 0.32 TCGA-FS-A4FC-06 18 3215171 3215171 G A MYOM1 Silent p.Y17Y 0.25 TCGA-FS-A4FC-06 18 44560390 44560390 C T TCEB3B Missense_Mutation p.E416K 0.29 tolerated(0.34) benign(0) TCGA-FS-A4FC-06 18 44589357 44589357 C T KATNAL2 Silent p.D116D 0.06 TCGA-FS-A4FC-06 18 55361822 55361822 C T ATP8B1 Missense_Mutation p.V341I 0.21 tolerated(0.2) benign(0.036) TCGA-FS-A4FC-06 18 61018162 61018163 - G KDSR Frame_Shift_Ins p.K190Qfs*19 0.25 TCGA-FS-A4FC-06 18 65180989 65180989 G A DSEL Missense_Mutation p.S296F 0.30 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 18 70532107 70532107 G A NETO1 Silent p.I52I 0.13 TCGA-FS-A4FC-06 18 70532143 70532143 C A NETO1 Missense_Mutation p.Q40H 0.23 tolerated(0.16) benign(0.326) TCGA-FS-A4FC-06 19 10085076 10085076 G A COL5A3 Silent p.D1117D 0.30 TCGA-FS-A4FC-06 19 11348193 11348193 G A DOCK6 Missense_Mutation p.P671L 0.27 tolerated(0.07) benign(0.038) TCGA-FS-A4FC-06 19 11725466 11725466 T C ZNF627 Missense_Mutation p.V43A 0.26 deleterious(0) benign(0.082) TCGA-FS-A4FC-06 19 12924349 12924349 G C RNASEH2A 3'UTR 0.33 TCGA-FS-A4FC-06 19 13080430 13080430 C T DAND5 5'UTR 0.37 TCGA-FS-A4FC-06 19 14492223 14492223 C T CD97 5'Flank 0.35 TCGA-FS-A4FC-06 19 14693909 14693909 G A CLEC17A 5'Flank 0.34 TCGA-FS-A4FC-06 19 14693910 14693910 G T CLEC17A 5'Flank 0.34 TCGA-FS-A4FC-06 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.27 TCGA-FS-A4FC-06 19 15198834 15198834 G A OR1I1 Missense_Mutation p.D320N 0.24 tolerated_low_confidence(0.22) possibly_damaging(0.811) TCGA-FS-A4FC-06 19 15376339 15376339 G A BRD4 Silent p.F225F 0.29 TCGA-FS-A4FC-06 19 15739209 15739209 G A CYP4F8 RNA 0.29 TCGA-FS-A4FC-06 19 15905602 15905602 G A OR10H5 Silent p.V248V 0.27 TCGA-FS-A4FC-06 19 16024554 16024554 C T CYP4F11 Silent p.A521A 0.22 TCGA-FS-A4FC-06 19 16601311 16601311 C T CALR3 Silent p.G88G 0.28 TCGA-FS-A4FC-06 19 17163670 17163670 C T HAUS8 Silent p.K298K 0.22 TCGA-FS-A4FC-06 19 1783079 1783079 G A ATP8B3 Missense_Mutation p.S1284F 0.33 tolerated(0.08) benign(0.298) TCGA-FS-A4FC-06 19 17886797 17886797 G A FCHO1 Missense_Mutation p.A337T 0.28 tolerated(0.55) benign(0.002) TCGA-FS-A4FC-06 19 17972151 17972151 A C RPL18A Missense_Mutation p.H23P 0.22 tolerated(1) benign(0) TCGA-FS-A4FC-06 19 18321953 18321953 G A PDE4C Missense_Mutation p.P642L 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 19 19105425 19105425 G A SUGP2 Intron 0.29 TCGA-FS-A4FC-06 19 21606578 21606578 G A ZNF493 Missense_Mutation p.G373R 0.24 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FC-06 19 31770514 31770514 G A TSHZ3 Missense_Mutation p.S62F 0.26 deleterious(0) possibly_damaging(0.77) TCGA-FS-A4FC-06 19 34262985 34262985 C T CHST8 Missense_Mutation p.P98S 0.20 tolerated(0.78) benign(0.005) TCGA-FS-A4FC-06 19 35250778 35250778 G A ZNF599 Missense_Mutation p.P310S 0.22 tolerated(0.17) probably_damaging(1) TCGA-FS-A4FC-06 19 37117984 37117984 C T ZNF382 Silent p.L395L 0.28 TCGA-FS-A4FC-06 19 37680975 37680975 G A ZNF585B Silent p.N50N 0.23 TCGA-FS-A4FC-06 19 38949939 38949939 G A RYR1 Missense_Mutation p.G774E 0.38 probably_damaging(0.996) TCGA-FS-A4FC-06 19 39070699 39070699 C T RYR1 Silent p.L4814L 0.33 TCGA-FS-A4FC-06 19 40228620 40228620 G A CLC 5'UTR 0.25 TCGA-FS-A4FC-06 19 40887038 40887038 G A HIPK4 Missense_Mutation p.S287L 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-FS-A4FC-06 19 42931065 42931065 T A LIPE Missense_Mutation p.Q79H 0.27 deleterious_low_confidence(0.03) benign(0.003) TCGA-FS-A4FC-06 19 43358102 43358102 G A PSG10P Intron 0.27 TCGA-FS-A4FC-06 19 43773628 43773628 G A PSG9 5'UTR 0.38 TCGA-FS-A4FC-06 19 44301849 44301849 G A LYPD5 Missense_Mutation p.S217F 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-FS-A4FC-06 19 44571352 44571352 A T ZNF223 Missense_Mutation p.K457N 0.33 tolerated(0.06) probably_damaging(0.984) TCGA-FS-A4FC-06 19 45175224 45175224 C T CEACAM19 Silent p.T7T 0.41 TCGA-FS-A4FC-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.25 TCGA-FS-A4FC-06 19 46828842 46828842 C T HIF3A Silent p.L462L 0.18 TCGA-FS-A4FC-06 19 47542691 47542691 G A NPAS1 Silent p.R277R 0.33 TCGA-FS-A4FC-06 19 48836424 48836424 G A TMEM143 3'UTR 0.25 TCGA-FS-A4FC-06 19 50027944 50027944 C T FCGRT Missense_Mutation p.S261L 0.23 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 19 51295399 51295399 G A ACPT Missense_Mutation p.E174K 0.33 tolerated(0.1) benign(0.005) TCGA-FS-A4FC-06 19 51869540 51869540 A G CLDND2 3'Flank 0.17 TCGA-FS-A4FC-06 19 52033958 52033958 C T SIGLEC6 Missense_Mutation p.R228K 0.30 tolerated(0.18) benign(0.068) TCGA-FS-A4FC-06 19 52091783 52091783 A C ZNF175 3'UTR 0.21 TCGA-FS-A4FC-06 19 52272868 52272868 C T FPR2 Silent p.T319T 0.30 TCGA-FS-A4FC-06 19 53453437 53453437 G A ZNF816 Missense_Mutation p.H531Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 19 53884616 53884616 C T ZNF525 Missense_Mutation p.R262C 0.24 tolerated(0.07) possibly_damaging(0.502) TCGA-FS-A4FC-06 19 54304614 54304614 C T NLRP12 Missense_Mutation p.E875K 0.30 deleterious(0.03) benign(0.148) TCGA-FS-A4FC-06 19 54754805 54754805 G A LILRB5 Intron 0.27 TCGA-FS-A4FC-06 19 55179361 55179361 C T LILRB4 Missense_Mutation p.A413V 0.29 deleterious(0.04) possibly_damaging(0.813) TCGA-FS-A4FC-06 19 55365366 55365366 G A KIR3DL2 Missense_Mutation p.G174R 0.29 tolerated(0.07) probably_damaging(0.99) TCGA-FS-A4FC-06 19 55494709 55494709 C T NLRP2 Missense_Mutation p.P548L 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 19 56321627 56321627 G A NLRP11 Missense_Mutation p.H117Y 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-FS-A4FC-06 19 56329477 56329477 C T NLRP11 Missense_Mutation p.E22K 0.33 deleterious(0.01) possibly_damaging(0.877) TCGA-FS-A4FC-06 19 56701378 56701378 C T ZSCAN5B Missense_Mutation p.E436K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 19 56704158 56704158 C T ZSCAN5B Silent p.V88V 0.14 TCGA-FS-A4FC-06 19 57330038 57330038 G A PEG3 Silent p.L234L 0.24 TCGA-FS-A4FC-06 19 57646454 57646454 C T ZIM3 Silent p.R417R 0.20 TCGA-FS-A4FC-06 19 57867741 57867741 G A ZNF304 Silent p.T168T 0.24 TCGA-FS-A4FC-06 19 58187680 58187680 C T ZSCAN4 Missense_Mutation p.S56L 0.23 tolerated(0.18) benign(0.069) TCGA-FS-A4FC-06 19 5843700 5843700 G A FUT3 3'UTR 0.27 TCGA-FS-A4FC-06 19 58490716 58490716 C T ZNF606 Silent p.T444T 0.34 TCGA-FS-A4FC-06 19 58773948 58773948 C T ZNF544 Missense_Mutation p.P659L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 19 59010627 59010627 G A SLC27A5 Intron 0.21 TCGA-FS-A4FC-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.22 TCGA-FS-A4FC-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.21 deleterious(0) possibly_damaging(0.891) TCGA-FS-A4FC-06 19 6937554 6937554 G A EMR1 Splice_Site p.X851_splice 0.24 TCGA-FS-A4FC-06 19 7677804 7677804 C T CAMSAP3 Missense_Mutation p.H836Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 19 8670162 8670162 G A ADAMTS10 Missense_Mutation p.S57L 0.37 deleterious(0.04) benign(0.081) TCGA-FS-A4FC-06 19 9012839 9012839 C T MUC16 Missense_Mutation p.E12869K 0.31 probably_damaging(0.959) TCGA-FS-A4FC-06 19 9060020 9060020 G A MUC16 Silent p.S9142S 0.16 TCGA-FS-A4FC-06 19 9062392 9062392 C T MUC16 Missense_Mutation p.A8352T 0.21 unknown(0) TCGA-FS-A4FC-06 19 9068217 9068217 G A MUC16 Missense_Mutation p.S6410F 0.29 unknown(0) TCGA-FS-A4FC-06 19 9076139 9076139 G A MUC16 Silent p.I3769I 0.32 TCGA-FS-A4FC-06 19 9087373 9087373 G A MUC16 Missense_Mutation p.S1481L 0.28 unknown(0) TCGA-FS-A4FC-06 1 100701062 100701062 G A DBT Missense_Mutation p.R61C 0.34 tolerated(0.2) benign(0.005) TCGA-FS-A4FC-06 1 101198081 101198081 C T VCAM1 Silent p.L545L 0.37 TCGA-FS-A4FC-06 1 102302452 102302452 G A OLFM3 Missense_Mutation p.R67C 0.40 deleterious(0) possibly_damaging(0.745) TCGA-FS-A4FC-06 1 109804975 109804975 G A CELSR2 Missense_Mutation p.D1485N 0.57 deleterious(0) probably_damaging(0.967) TCGA-FS-A4FC-06 1 110302390 110302390 G A EPS8L3 Silent p.F55F 0.51 TCGA-FS-A4FC-06 1 11174416 11174416 G A MTOR Missense_Mutation p.A2420V 0.40 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 1 112524905 112524905 C T KCND3 Missense_Mutation p.M148I 0.36 tolerated(0.53) benign(0) TCGA-FS-A4FC-06 1 114397547 114397547 G A PTPN22 Missense_Mutation p.P222L 0.39 deleterious(0) probably_damaging(0.985) TCGA-FS-A4FC-06 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.36 deleterious(0) possibly_damaging(0.534) TCGA-FS-A4FC-06 1 115524038 115524038 C T SYCP1 Nonsense_Mutation p.R822* 0.21 TCGA-FS-A4FC-06 1 117120086 117120086 G A IGSF3 Missense_Mutation p.L1165F 0.41 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FC-06 1 118537066 118537066 A C SPAG17 Missense_Mutation p.L1714R 0.45 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 1 12855638 12855638 G A PRAMEF1 Silent p.L306L 0.46 TCGA-FS-A4FC-06 1 1421570 1421570 C T ATAD3B Silent p.I348I 0.47 TCGA-FS-A4FC-06 1 152057629 152057629 G A TCHHL1 Silent p.I843I 0.27 TCGA-FS-A4FC-06 1 152127833 152127833 G A RPTN Missense_Mutation p.S581F 0.27 tolerated(0.07) benign(0.188) TCGA-FS-A4FC-06 1 152282675 152282675 C T FLG Missense_Mutation p.E1563K 0.29 possibly_damaging(0.621) TCGA-FS-A4FC-06 1 152324797 152324797 C T FLG2 Missense_Mutation p.R1822Q 0.29 benign(0.079) TCGA-FS-A4FC-06 1 152325397 152325397 C T FLG2 Missense_Mutation p.G1622E 0.23 probably_damaging(0.972) TCGA-FS-A4FC-06 1 152538369 152538369 C T LCE3E 3'UTR 0.27 TCGA-FS-A4FC-06 1 153066218 153066218 G A SPRR2E Nonsense_Mutation p.Q4* 0.32 TCGA-FS-A4FC-06 1 153735242 153735242 C T INTS3 Missense_Mutation p.H519Y 0.16 tolerated(0.36) benign(0.134) TCGA-FS-A4FC-06 1 154296092 154296092 G A AQP10 Missense_Mutation p.G173R 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-FS-A4FC-06 1 154320906 154320906 C T ATP8B2 Silent p.A1095A 0.30 TCGA-FS-A4FC-06 1 155823531 155823531 G A GON4L Missense_Mutation p.S14F 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.683) TCGA-FS-A4FC-06 1 156376803 156376803 C T C1orf61 Intron 0.23 TCGA-FS-A4FC-06 1 156811480 156811480 G A INSRR Silent p.I1168I 0.33 TCGA-FS-A4FC-06 1 156812213 156812213 G A INSRR Nonsense_Mutation p.R1072* 0.24 TCGA-FS-A4FC-06 1 156844765 156844765 A G NTRK1 Missense_Mutation p.N440S 0.29 tolerated(0.17) benign(0.009) TCGA-FS-A4FC-06 1 156880118 156880118 G A PEAR1 Missense_Mutation p.E591K 0.25 tolerated(0.17) benign(0.008) TCGA-FS-A4FC-06 1 156928857 156928857 C T ARHGEF11 Missense_Mutation p.E454K 0.32 tolerated(0.17) probably_damaging(0.926) TCGA-FS-A4FC-06 1 157067777 157067777 G A ETV3L Silent p.L164L 0.26 TCGA-FS-A4FC-06 1 158450470 158450470 T G OR10R2 Missense_Mutation p.V268G 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 1 159283829 159283829 G A OR10J3 Silent p.V207V 0.23 TCGA-FS-A4FC-06 1 159283909 159283909 C T OR10J3 Missense_Mutation p.D181N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FC-06 1 160648776 160648776 G A CD48 3'UTR 0.21 TCGA-FS-A4FC-06 1 166039326 166039326 G A FAM78B 3'UTR 0.15 TCGA-FS-A4FC-06 1 167023540 167023540 C T GPA33 3'UTR 0.28 TCGA-FS-A4FC-06 1 167659311 167659311 C T RCSD1 Missense_Mutation p.P75L 0.22 tolerated(0.28) benign(0.059) TCGA-FS-A4FC-06 1 168073917 168073917 G A GPR161 Missense_Mutation p.L78F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 1 169446457 169446457 G A SLC19A2 Missense_Mutation p.P248L 0.29 tolerated(0.07) benign(0.033) TCGA-FS-A4FC-06 1 169586312 169586312 C T SELP Nonsense_Mutation p.W145* 0.29 TCGA-FS-A4FC-06 1 169586332 169586332 G A SELP Missense_Mutation p.P139S 0.28 tolerated(0.68) benign(0.003) TCGA-FS-A4FC-06 1 169698400 169698400 G A SELE Silent p.F339F 0.26 TCGA-FS-A4FC-06 1 17046507 17046507 G A ESPNP RNA 0.30 TCGA-FS-A4FC-06 1 170521662 170521662 A T GORAB 3'UTR 0.29 TCGA-FS-A4FC-06 1 172501885 172501885 C T SUCO 5'Flank 0.35 TCGA-FS-A4FC-06 1 172634809 172634809 G A FASLG Missense_Mutation p.G167R 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 1 176903435 176903435 G A ASTN1 Missense_Mutation p.R842C 0.29 deleterious(0) probably_damaging(0.993) TCGA-FS-A4FC-06 1 179452321 179452321 G A AXDND1 Missense_Mutation p.E686K 0.32 deleterious(0.04) possibly_damaging(0.636) TCGA-FS-A4FC-06 1 179460800 179460800 G A AXDND1 Missense_Mutation p.G740E 0.24 tolerated(0.09) benign(0.186) TCGA-FS-A4FC-06 1 182026400 182026400 G A ZNF648 Missense_Mutation p.P249L 0.41 deleterious(0.02) benign(0.132) TCGA-FS-A4FC-06 1 197073244 197073244 G A ASPM Missense_Mutation p.R1713C 0.30 deleterious(0.04) benign(0.117) TCGA-FS-A4FC-06 1 203467937 203467937 C A OPTC Missense_Mutation p.R167S 0.29 tolerated(0.62) benign(0.337) TCGA-FS-A4FC-06 1 204128724 204128724 C T REN Splice_Site p.X165_splice 0.19 TCGA-FS-A4FC-06 1 204943419 204943419 G T NFASC Splice_Site p.X464_splice 0.29 TCGA-FS-A4FC-06 1 207273196 207273196 G A C4BPB Silent p.K227K 0.29 TCGA-FS-A4FC-06 1 207684981 207684981 G A CR1 Missense_Mutation p.E157K 0.20 tolerated(0.74) benign(0.352) TCGA-FS-A4FC-06 1 214705762 214705762 G A PTPN14 Intron 0.27 TCGA-FS-A4FC-06 1 223177774 223177774 C T DISP1 Missense_Mutation p.A1012V 0.28 tolerated(0.05) probably_damaging(0.951) TCGA-FS-A4FC-06 1 223991036 223991036 G A TP53BP2 Silent p.I256I 0.29 TCGA-FS-A4FC-06 1 226050212 226050212 G A TMEM63A Silent p.L298L 0.25 TCGA-FS-A4FC-06 1 226075716 226075716 G A RP4-559A3.7 Missense_Mutation p.P198S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FS-A4FC-06 1 228033738 228033738 C T PRSS38 Silent p.S270S 0.24 TCGA-FS-A4FC-06 1 228346801 228346801 G A GJC2 3'UTR 0.36 TCGA-FS-A4FC-06 1 228403470 228403470 G A OBSCN Missense_Mutation p.G679R 0.21 probably_damaging(0.997) TCGA-FS-A4FC-06 1 228470836 228470836 G A OBSCN Missense_Mutation p.R3292K 0.38 benign(0.215) TCGA-FS-A4FC-06 1 233482258 233482258 G A MLK4 Silent p.L292L 0.31 TCGA-FS-A4FC-06 1 236732404 236732404 G A HEATR1 Silent p.I1323I 0.22 TCGA-FS-A4FC-06 1 24434540 24434540 G A MYOM3 Missense_Mutation p.A62V 0.36 tolerated(0.11) benign(0.007) TCGA-FS-A4FC-06 1 247737658 247737658 G A GCSAML Missense_Mutation p.D128N 0.41 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 1 247751766 247751766 G A OR2G2 Silent p.L35L 0.34 TCGA-FS-A4FC-06 1 247769800 247769800 C T OR2G3 Missense_Mutation p.L305F 0.21 tolerated(0.08) benign(0.043) TCGA-FS-A4FC-06 1 247921397 247921397 G A OR1C1 Silent p.F104F 0.43 TCGA-FS-A4FC-06 1 248085113 248085113 C T OR2T8 Missense_Mutation p.S265F 0.39 deleterious(0) probably_damaging(0.968) TCGA-FS-A4FC-06 1 248366692 248366692 T C OR2M3 Missense_Mutation p.L108P 0.19 tolerated(0.21) possibly_damaging(0.527) TCGA-FS-A4FC-06 1 248436215 248436215 C T OR2T33 Missense_Mutation p.R301Q 0.45 deleterious(0) benign(0.279) TCGA-FS-A4FC-06 1 248436323 248436323 G A OR2T33 Missense_Mutation p.S265F 0.07 deleterious(0) probably_damaging(0.968) TCGA-FS-A4FC-06 1 27338932 27338932 G A FAM46B Missense_Mutation p.P77L 0.70 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 1 32687990 32687990 G A EIF3I 5'UTR 0.22 TCGA-FS-A4FC-06 1 34666411 34666411 G A C1orf94 Missense_Mutation p.G350R 0.34 deleterious(0.01) benign(0.068) TCGA-FS-A4FC-06 1 35250896 35250896 T A GJB3 Missense_Mutation p.I178N 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-FS-A4FC-06 1 36932124 36932124 G A CSF3R Missense_Mutation p.P809L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 1 38465046 38465046 G A FHL3 Silent p.S13S 0.26 TCGA-FS-A4FC-06 1 43021879 43021879 G A CCDC30 Missense_Mutation p.E160K 0.12 tolerated(0.06) benign(0.429) TCGA-FS-A4FC-06 1 43119576 43119576 G A CCDC30 Silent p.K743K 0.29 TCGA-FS-A4FC-06 1 46877286 46877286 C T FAAH Missense_Mutation p.S440L 0.28 deleterious(0.01) benign(0.31) TCGA-FS-A4FC-06 1 53555537 53555537 G A SLC1A7 Silent p.I432I 0.25 TCGA-FS-A4FC-06 1 57417763 57417763 C T C8B Silent p.T208T 0.26 TCGA-FS-A4FC-06 1 64671363 64671363 G A UBE2U Nonsense_Mutation p.W36* 0.17 TCGA-FS-A4FC-06 1 67148008 67148008 C T SGIP1 Missense_Mutation p.S424L 0.21 deleterious(0) possibly_damaging(0.885) TCGA-FS-A4FC-06 1 70488850 70488850 G A LRRC7 Silent p.G491G 0.36 TCGA-FS-A4FC-06 1 75139211 75139211 G A C1orf173 5'UTR 0.44 TCGA-FS-A4FC-06 1 7700489 7700489 G A CAMTA1 Silent p.L180L 0.37 TCGA-FS-A4FC-06 1 82452714 82452714 G A LPHN2 Intron 0.28 TCGA-FS-A4FC-06 1 91405830 91405830 G A ZNF644 Nonsense_Mutation p.Q361* 0.25 TCGA-FS-A4FC-06 1 91859860 91859860 G A HFM1 Missense_Mutation p.P95L 0.23 tolerated_low_confidence(0.11) benign(0) TCGA-FS-A4FC-06 1 98348912 98348912 G A DPYD Missense_Mutation p.P20S 0.21 deleterious(0) probably_damaging(0.988) TCGA-FS-A4FC-06 20 1290966 1290966 C T SDCBP2 3'UTR 0.29 TCGA-FS-A4FC-06 20 1290967 1290967 C T SDCBP2 3'UTR 0.29 TCGA-FS-A4FC-06 20 13830949 13830949 C T SEL1L2 Missense_Mutation p.R499K 0.24 tolerated_low_confidence(0.3) benign(0.054) TCGA-FS-A4FC-06 20 1592124 1592124 G A SIRPB1 Intron 0.34 TCGA-FS-A4FC-06 20 16348345 16348345 C G KIF16B Missense_Mutation p.V1209L 0.39 tolerated_low_confidence(0.57) benign(0.046) TCGA-FS-A4FC-06 20 2315774 2315774 C T TGM3 Missense_Mutation p.P552L 0.25 deleterious(0.05) probably_damaging(1) TCGA-FS-A4FC-06 20 2604963 2604963 G A TMC2 Missense_Mutation p.D743N 0.23 deleterious(0.01) benign(0.165) TCGA-FS-A4FC-06 20 29976852 29976852 C T DEFB119 Missense_Mutation p.M81I 0.22 tolerated_low_confidence(0.11) benign(0) TCGA-FS-A4FC-06 20 32210981 32210981 C T CBFA2T2 Missense_Mutation p.P200S 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-FS-A4FC-06 20 3678655 3678655 G A SIGLEC1 Missense_Mutation p.H638Y 0.31 deleterious(0.01) possibly_damaging(0.904) TCGA-FS-A4FC-06 20 36932730 36932730 G A BPI Silent p.R39R 0.35 TCGA-FS-A4FC-06 20 40980841 40980841 T A PTPRT Missense_Mutation p.T549S 0.29 tolerated(0.08) probably_damaging(0.96) TCGA-FS-A4FC-06 20 43752477 43752477 G A WFDC12 3'UTR 0.16 TCGA-FS-A4FC-06 20 45131562 45131562 C T ZNF334 Missense_Mutation p.G139E 0.32 tolerated(0.26) benign(0.082) TCGA-FS-A4FC-06 20 45315731 45315731 G A TP53RK Silent p.N141N 0.28 TCGA-FS-A4FC-06 20 50769433 50769433 G A ZFP64 Missense_Mutation p.S433F 0.23 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 20 53171482 53171482 G A DOK5 Missense_Mutation p.R26Q 0.33 deleterious(0) probably_damaging(0.981) TCGA-FS-A4FC-06 20 56137166 56137166 C T PCK1 Silent p.I88I 0.25 TCGA-FS-A4FC-06 20 57769019 57769019 C T ZNF831 Missense_Mutation p.S982L 0.28 tolerated(0.16) benign(0.311) TCGA-FS-A4FC-06 20 5844062 5844062 G A C20orf196 Missense_Mutation p.D191N 0.21 deleterious(0) probably_damaging(0.928) TCGA-FS-A4FC-06 20 60485599 60485599 C T CDH4 Missense_Mutation p.P437L 0.19 deleterious(0.02) possibly_damaging(0.848) TCGA-FS-A4FC-06 20 60511877 60511877 C T CDH4 Missense_Mutation p.T876I 0.25 deleterious(0.01) possibly_damaging(0.908) TCGA-FS-A4FC-06 20 60886298 60886298 G A LAMA5 Silent p.T3336T 0.18 TCGA-FS-A4FC-06 20 60904063 60904063 G A LAMA5 Silent p.S1428S 0.22 TCGA-FS-A4FC-06 20 60926762 60926762 G A LAMA5 Silent p.F318F 0.19 TCGA-FS-A4FC-06 20 7875857 7875857 C T HAO1 Missense_Mutation p.E246K 0.30 tolerated(0.55) benign(0.002) TCGA-FS-A4FC-06 21 10971334 10971334 G A TPTE Missense_Mutation p.T8I 0.10 tolerated_low_confidence(0.12) benign(0.006) TCGA-FS-A4FC-06 21 15561696 15561696 C T LIPI Missense_Mutation p.D52N 0.23 tolerated(0.48) benign(0.329) TCGA-FS-A4FC-06 21 15745920 15745920 C A HSPA13 3'UTR 0.24 TCGA-FS-A4FC-06 21 34635309 34635309 C T IFNAR2 Missense_Mutation p.S351F 0.38 tolerated(0.07) probably_damaging(0.979) TCGA-FS-A4FC-06 21 38309461 38309461 G A HLCS Missense_Mutation p.P95L 0.35 tolerated(0.68) benign(0.001) TCGA-FS-A4FC-06 21 39672267 39672267 G A KCNJ15 Missense_Mutation p.E362K 0.21 tolerated(0.24) unknown(0) TCGA-FS-A4FC-06 21 42748973 42748973 C T MX2 Missense_Mutation p.P47L 0.28 deleterious(0.05) benign(0.026) TCGA-FS-A4FC-06 21 43783428 43783428 G A TFF1 Silent p.F58F 0.26 TCGA-FS-A4FC-06 21 44299652 44299652 C T WDR4 5'UTR 0.34 TCGA-FS-A4FC-06 21 45107923 45107923 G A RRP1B Silent p.E556E 0.39 TCGA-FS-A4FC-06 21 45978609 45978609 G A KRTAP10-3 5'UTR 0.34 TCGA-FS-A4FC-06 21 47616176 47616176 G A LSS Missense_Mutation p.T559I 0.30 tolerated(0.38) probably_damaging(0.94) TCGA-FS-A4FC-06 21 47969775 47969775 C T DIP2A Nonsense_Mutation p.Q872* 0.32 TCGA-FS-A4FC-06 22 17072006 17072006 C T CCT8L2 Missense_Mutation p.G479S 0.27 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FC-06 22 17288903 17288903 C T XKR3 Missense_Mutation p.E21K 0.32 tolerated(0.47) benign(0.035) TCGA-FS-A4FC-06 22 19341013 19341013 G A HIRA Missense_Mutation p.S905F 0.28 tolerated(0.23) probably_damaging(0.951) TCGA-FS-A4FC-06 22 21348405 21348405 G A LZTR1 Missense_Mutation p.E488K 0.21 tolerated(0.32) benign(0.006) TCGA-FS-A4FC-06 22 22891015 22891015 G A PRAME Missense_Mutation p.S335L 0.31 tolerated(0.31) benign(0.012) TCGA-FS-A4FC-06 22 32241212 32241212 C T DEPDC5 Missense_Mutation p.R995C 0.22 deleterious(0) probably_damaging(0.985) TCGA-FS-A4FC-06 22 40139569 40139569 G A ENTHD1 3'UTR 0.15 TCGA-FS-A4FC-06 22 40342949 40342949 C T GRAP2 Intron 0.33 TCGA-FS-A4FC-06 22 43926841 43926841 C T EFCAB6 Missense_Mutation p.E1413K 0.32 deleterious(0.03) benign(0.21) TCGA-FS-A4FC-06 22 46640944 46640944 G A CDPF1 3'UTR 0.21 TCGA-FS-A4FC-06 22 46654550 46654550 G A PKDREJ Missense_Mutation p.S1557F 0.30 tolerated(0.05) benign(0.027) TCGA-FS-A4FC-06 22 50900658 50900658 G C SBF1 Missense_Mutation p.A791G 0.28 tolerated(0.4) benign(0.364) TCGA-FS-A4FC-06 2 103090193 103090193 G A SLC9A4 5'UTR 0.29 TCGA-FS-A4FC-06 2 105924123 105924123 G A TGFBRAP1 Silent p.I212I 0.24 TCGA-FS-A4FC-06 2 10866644 10866644 C T ATP6V1C2 Missense_Mutation p.S49F 0.33 tolerated(0.06) possibly_damaging(0.629) TCGA-FS-A4FC-06 2 113763578 113763578 G A IL36A Missense_Mutation p.G13E 0.22 tolerated(0.21) benign(0.369) TCGA-FS-A4FC-06 2 113763579 113763579 G A IL36A Silent p.G13G 0.25 TCGA-FS-A4FC-06 2 11593908 11593908 C T E2F6 Silent p.K60K 0.38 TCGA-FS-A4FC-06 2 119729076 119729076 G A MARCO Silent p.G142G 0.33 TCGA-FS-A4FC-06 2 119739810 119739810 C A MARCO Missense_Mutation p.A327D 0.17 tolerated(0.6) unknown(0) TCGA-FS-A4FC-06 2 120005756 120005756 G A STEAP3 Missense_Mutation p.D342N 0.22 tolerated(0.39) benign(0.006) TCGA-FS-A4FC-06 2 130832468 130832468 G A POTEF Silent p.V859V 0.25 TCGA-FS-A4FC-06 2 135920396 135920396 C T RAB3GAP1 Missense_Mutation p.P822L 0.23 tolerated(0.52) benign(0.029) TCGA-FS-A4FC-06 2 137814238 137814238 G A THSD7B Missense_Mutation p.E130K 0.26 tolerated(0.25) benign(0.22) TCGA-FS-A4FC-06 2 1507796 1507796 C T TPO Silent p.F821F 0.27 TCGA-FS-A4FC-06 2 158157376 158157376 C T GALNT5 Silent p.I768I 0.11 TCGA-FS-A4FC-06 2 160676315 160676315 C T LY75-CD302 Missense_Mutation p.D1359N 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-FS-A4FC-06 2 160798482 160798482 G A PLA2R1 Missense_Mutation p.P1400L 0.42 tolerated(0.08) possibly_damaging(0.477) TCGA-FS-A4FC-06 2 161056669 161056669 G A ITGB6 5'UTR 0.19 TCGA-FS-A4FC-06 2 163693142 163693142 C T KCNH7 Missense_Mutation p.G71E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 2 165802230 165802230 G A SLC38A11 Silent p.S23S 0.16 TCGA-FS-A4FC-06 2 165997345 165997345 A T SCN3A Missense_Mutation p.F612Y 0.28 tolerated(0.08) probably_damaging(0.992) TCGA-FS-A4FC-06 2 166245514 166245514 C T SCN2A Missense_Mutation p.P1733L 0.24 tolerated(0.08) probably_damaging(1) TCGA-FS-A4FC-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.30 probably_damaging(0.999) TCGA-FS-A4FC-06 2 168106696 168106696 G A XIRP2 Missense_Mutation p.E2932K 0.27 possibly_damaging(0.571) TCGA-FS-A4FC-06 2 172966369 172966369 C T DLX2 Missense_Mutation p.E136K 0.20 deleterious(0.01) possibly_damaging(0.833) TCGA-FS-A4FC-06 2 17698469 17698469 C T RAD51AP2 Missense_Mutation p.R405K 0.20 tolerated(0.55) benign(0.005) TCGA-FS-A4FC-06 2 179501362 179501362 C T TTN Missense_Mutation p.E13698K 0.24 TCGA-FS-A4FC-06 2 179594512 179594512 G A TTN Silent p.F6156F 0.28 TCGA-FS-A4FC-06 2 179594547 179594547 C T TTN Missense_Mutation p.E6145K 0.28 TCGA-FS-A4FC-06 2 179604201 179604201 C T TTN Missense_Mutation p.E4587K 0.20 TCGA-FS-A4FC-06 2 179613743 179613743 C T TTN Intron 0.20 TCGA-FS-A4FC-06 2 182322468 182322468 G A ITGA4 Silent p.P29P 0.46 TCGA-FS-A4FC-06 2 182360570 182360570 G A ITGA4 Silent p.T482T 0.26 TCGA-FS-A4FC-06 2 182363375 182363375 T A ITGA4 Missense_Mutation p.D522E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 2 182400280 182400280 G A ITGA4 3'UTR 0.38 TCGA-FS-A4FC-06 2 185801068 185801068 A G ZNF804A Silent p.Q315Q 0.22 TCGA-FS-A4FC-06 2 188245470 188245470 C T CALCRL Missense_Mutation p.D77N 0.23 deleterious(0) possibly_damaging(0.875) TCGA-FS-A4FC-06 2 1926430 1926430 T C MYT1L Missense_Mutation p.T371A 0.26 tolerated_low_confidence(0.06) benign(0.295) TCGA-FS-A4FC-06 2 196718247 196718247 G A DNAH7 Silent p.D2867D 0.41 TCGA-FS-A4FC-06 2 196799380 196799380 C T DNAH7 Missense_Mutation p.A1136T 0.26 deleterious(0.03) possibly_damaging(0.665) TCGA-FS-A4FC-06 2 196837011 196837011 C T DNAH7 Silent p.R671R 0.19 TCGA-FS-A4FC-06 2 203622097 203622097 C T FAM117B Silent p.S422S 0.37 TCGA-FS-A4FC-06 2 204022527 204022527 A G NBEAL1 Missense_Mutation p.D1869G 0.31 deleterious(0) benign(0.333) TCGA-FS-A4FC-06 2 20458107 20458107 G A PUM2 Missense_Mutation p.A794V 0.36 tolerated(0.08) benign(0.283) TCGA-FS-A4FC-06 2 206641084 206641084 C T NRP2 Intron 0.27 TCGA-FS-A4FC-06 2 215838741 215838741 C T ABCA12 Missense_Mutation p.E1832K 0.29 tolerated(0.21) benign(0.04) TCGA-FS-A4FC-06 2 215884364 215884364 C T ABCA12 Missense_Mutation p.E482K 0.29 tolerated(0.33) benign(0.006) TCGA-FS-A4FC-06 2 219129231 219129231 G A AAMP 3'UTR 0.19 TCGA-FS-A4FC-06 2 220284878 220284878 G A DES Splice_Site p.X213_splice 0.25 TCGA-FS-A4FC-06 2 220494022 220494022 C T SLC4A3 Missense_Mutation p.P125L 0.35 deleterious_low_confidence(0.05) benign(0.306) TCGA-FS-A4FC-06 2 220494144 220494144 G A SLC4A3 Splice_Site p.X165_splice 0.25 TCGA-FS-A4FC-06 2 227729501 227729501 C T RHBDD1 Missense_Mutation p.T31I 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 2 228855733 228855733 C T SPHKAP Missense_Mutation p.E1648K 0.16 deleterious(0) probably_damaging(0.982) TCGA-FS-A4FC-06 2 228881535 228881535 C T SPHKAP Silent p.E1345E 0.22 TCGA-FS-A4FC-06 2 228882796 228882796 C T SPHKAP Missense_Mutation p.C925Y 0.24 deleterious(0.03) benign(0.046) TCGA-FS-A4FC-06 2 231379974 231379974 C T SP100 Intron 0.36 TCGA-FS-A4FC-06 2 234601738 234601738 C A UGT1A6 Missense_Mutation p.L30M 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 2 234602469 234602469 C T UGT1A6 Silent p.F273F 0.30 TCGA-FS-A4FC-06 2 239006844 239006844 C T SCLY Missense_Mutation p.P404S 0.33 deleterious(0.01) possibly_damaging(0.605) TCGA-FS-A4FC-06 2 241569976 241569976 C T GPR35 Missense_Mutation p.P234S 0.32 tolerated(0.57) benign(0.037) TCGA-FS-A4FC-06 2 241622144 241622144 G A AQP12B Silent p.F37F 0.14 TCGA-FS-A4FC-06 2 242572546 242572546 G A THAP4 Silent p.I342I 0.27 TCGA-FS-A4FC-06 2 242755860 242755860 C T NEU4 Missense_Mutation p.T73M 0.36 tolerated(0.12) benign(0.399) TCGA-FS-A4FC-06 2 25016350 25016350 G A CENPO 5'UTR 0.25 TCGA-FS-A4FC-06 2 26806663 26806663 C T CIB4 Silent p.T144T 0.26 TCGA-FS-A4FC-06 2 29606651 29606651 C T ALK Missense_Mutation p.G410E 0.32 tolerated(0.6) possibly_damaging(0.477) TCGA-FS-A4FC-06 2 31133899 31133899 G A GALNT14 Silent p.I514I 0.34 TCGA-FS-A4FC-06 2 32400423 32400423 C T SLC30A6 Missense_Mutation p.L71F 0.31 tolerated(0.15) benign(0.101) TCGA-FS-A4FC-06 2 39406387 39406387 G A CDKL4 Nonsense_Mutation p.Q290* 0.25 TCGA-FS-A4FC-06 2 44032290 44032290 C T DYNC2LI1 Intron 0.28 TCGA-FS-A4FC-06 2 48896967 48896967 G A STON1-GTF2A1L Missense_Mutation p.G1066E 0.22 tolerated(1) benign(0.013) TCGA-FS-A4FC-06 2 54080838 54080838 G A GPR75 Silent p.F352F 0.26 TCGA-FS-A4FC-06 2 55749278 55749278 G A CCDC104 Silent p.E52E 0.28 TCGA-FS-A4FC-06 2 70188423 70188423 G A ASPRV1 Missense_Mutation p.T133I 0.29 deleterious(0.01) possibly_damaging(0.736) TCGA-FS-A4FC-06 2 71046974 71046974 G A CLEC4F Silent p.L37L 0.17 TCGA-FS-A4FC-06 2 74043938 74043938 C T C2orf78 Missense_Mutation p.P863L 0.30 tolerated(0.31) benign(0.081) TCGA-FS-A4FC-06 2 74688400 74688400 C A MOGS 3'UTR 0.29 TCGA-FS-A4FC-06 2 79384275 79384275 C T REG3A 3'UTR 0.34 TCGA-FS-A4FC-06 2 80620348 80620348 G A CTNNA2 Missense_Mutation p.E357K 0.24 deleterious(0.04) benign(0.06) TCGA-FS-A4FC-06 2 85598217 85598217 C T ELMOD3 Silent p.I123I 0.29 TCGA-FS-A4FC-06 2 95481126 95481126 C T ANKRD20A8P RNA 0.21 TCGA-FS-A4FC-06 2 95944469 95944469 G A PROM2 Missense_Mutation p.E351K 0.21 tolerated(0.17) possibly_damaging(0.805) TCGA-FS-A4FC-06 2 96259768 96259768 G A TRIM43 Intron 0.22 TCGA-FS-A4FC-06 2 97532119 97532119 G A SEMA4C Silent p.F53F 0.22 TCGA-FS-A4FC-06 2 99013438 99013438 G A CNGA3 Missense_Mutation p.G602E 0.28 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 2 99980236 99980236 A G EIF5B Missense_Mutation p.K350E 0.19 benign(0.292) TCGA-FS-A4FC-06 3 107885814 107885814 G A IFT57 Missense_Mutation p.H290Y 0.16 tolerated(0.12) benign(0.027) TCGA-FS-A4FC-06 3 107885815 107885815 G A IFT57 Silent p.L289L 0.16 TCGA-FS-A4FC-06 3 111927207 111927207 G A SLC9C1 Missense_Mutation p.R602C 0.27 tolerated(0.06) benign(0.009) TCGA-FS-A4FC-06 3 114014612 114014612 C T TIGIT Silent p.T94T 0.22 TCGA-FS-A4FC-06 3 115395143 115395143 G A GAP43 Missense_Mutation p.G141E 0.38 tolerated(0.09) probably_damaging(0.99) TCGA-FS-A4FC-06 3 119087271 119087271 C T ARHGAP31 Nonsense_Mutation p.Q86* 0.22 TCGA-FS-A4FC-06 3 119462855 119462855 G A MAATS1 Missense_Mutation p.E572K 0.27 tolerated(0.08) possibly_damaging(0.805) TCGA-FS-A4FC-06 3 119634983 119634983 G A GSK3B Silent p.I172I 0.27 TCGA-FS-A4FC-06 3 121643801 121643801 C T SLC15A2 Missense_Mutation p.P349S 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-FS-A4FC-06 3 128204728 128204728 G A GATA2 Missense_Mutation p.T238I 0.28 deleterious(0.01) benign(0.015) TCGA-FS-A4FC-06 3 130871272 130871272 C T NEK11 Missense_Mutation p.H230Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 3 14548331 14548331 G A GRIP2 RNA 0.21 TCGA-FS-A4FC-06 3 145914535 145914535 C T PLSCR4 Missense_Mutation p.E224K 0.35 deleterious(0) possibly_damaging(0.825) TCGA-FS-A4FC-06 3 14862611 14862611 C T FGD5 Missense_Mutation p.S678F 0.32 tolerated(0.06) probably_damaging(0.981) TCGA-FS-A4FC-06 3 14905670 14905670 C T FGD5 Missense_Mutation p.S854L 0.30 tolerated(0.1) benign(0.009) TCGA-FS-A4FC-06 3 150690496 150690496 G A CLRN1 5'Flank 0.23 TCGA-FS-A4FC-06 3 150840688 150840688 G A MED12L Missense_Mutation p.R108Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FC-06 3 15495347 15495347 G A COLQ Silent p.T429T 0.32 TCGA-FS-A4FC-06 3 158541955 158541955 C T MFSD1 Silent p.I455I 0.26 TCGA-FS-A4FC-06 3 164760924 164760924 C T SI Missense_Mutation p.E643K 0.34 deleterious(0) possibly_damaging(0.652) TCGA-FS-A4FC-06 3 164907232 164907232 G A SLITRK3 Missense_Mutation p.L463F 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 3 169525457 169525457 G A LRRC34 Missense_Mutation p.R100C 0.16 deleterious(0.04) benign(0.105) TCGA-FS-A4FC-06 3 182987986 182987986 C T B3GNT5 Missense_Mutation p.P134S 0.31 tolerated(0.22) benign(0.044) TCGA-FS-A4FC-06 3 184008945 184008945 G A ECE2 Missense_Mutation p.G769E 0.32 tolerated(0.08) possibly_damaging(0.851) TCGA-FS-A4FC-06 3 190027972 190027972 G A CLDN1 Silent p.T153T 0.24 TCGA-FS-A4FC-06 3 192516963 192516963 G A MB21D2 Missense_Mutation p.R230C 0.24 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 3 192997197 192997197 G A ATP13A5 Silent p.F1091F 0.30 TCGA-FS-A4FC-06 3 193042716 193042716 G A ATP13A5 Silent p.I537I 0.27 TCGA-FS-A4FC-06 3 193158409 193158409 G A ATP13A4 Silent p.T819T 0.36 TCGA-FS-A4FC-06 3 193220362 193220362 A T ATP13A4 Missense_Mutation p.F101I 0.29 tolerated(0.58) benign(0.016) TCGA-FS-A4FC-06 3 194379860 194379860 T A LSG1 Missense_Mutation p.E195D 0.31 deleterious(0.02) possibly_damaging(0.677) TCGA-FS-A4FC-06 3 195599264 195599264 G A TNK2 Missense_Mutation p.S508F 0.34 deleterious(0.04) probably_damaging(0.964) TCGA-FS-A4FC-06 3 24185190 24185190 C T THRB Silent p.L180L 0.30 TCGA-FS-A4FC-06 3 26751138 26751138 G A LRRC3B 5'UTR 0.23 TCGA-FS-A4FC-06 3 27463243 27463243 G A SLC4A7 Missense_Mutation p.P423S 0.33 deleterious(0) probably_damaging(0.943) TCGA-FS-A4FC-06 3 3137042 3137042 G A IL5RA Missense_Mutation p.P266S 0.30 tolerated(0.07) possibly_damaging(0.688) TCGA-FS-A4FC-06 3 36872551 36872551 G A TRANK1 Silent p.F2797F 0.21 TCGA-FS-A4FC-06 3 38591838 38591838 C T SCN5A Missense_Mutation p.D2009N 0.24 tolerated_low_confidence(0.07) benign(0.366) TCGA-FS-A4FC-06 3 38674523 38674523 C T SCN5A Intron 0.23 TCGA-FS-A4FC-06 3 38888064 38888064 G A SCN11A 3'UTR 0.31 TCGA-FS-A4FC-06 3 39227580 39227580 C T XIRP1 Silent p.K1119K 0.21 TCGA-FS-A4FC-06 3 4461818 4461818 G A SUMF1 Missense_Mutation p.P178S 0.18 deleterious(0) possibly_damaging(0.889) TCGA-FS-A4FC-06 3 47046714 47046714 C T NBEAL2 Missense_Mutation p.H2155Y 0.24 deleterious(0) probably_damaging(0.948) TCGA-FS-A4FC-06 3 48336288 48336288 C A NME6 Missense_Mutation p.V142L 0.20 tolerated(0.29) benign(0.004) TCGA-FS-A4FC-06 3 4854879 4854879 G A ITPR1 Missense_Mutation p.E2493K 0.38 tolerated(0.79) benign(0.061) TCGA-FS-A4FC-06 3 48641066 48641066 G A UQCRC1 Missense_Mutation p.R213C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 3 49017013 49017013 C T ARIH2 Nonsense_Mutation p.Q354* 0.22 TCGA-FS-A4FC-06 3 49568863 49568863 C T DAG1 Missense_Mutation p.P307S 0.28 tolerated(0.45) probably_damaging(0.953) TCGA-FS-A4FC-06 3 50330257 50330257 C T IFRD2 5'Flank 0.23 TCGA-FS-A4FC-06 3 52324696 52324696 C T GLYCTK Missense_Mutation p.P113L 0.25 deleterious(0) probably_damaging(0.987) TCGA-FS-A4FC-06 3 52547738 52547738 C T STAB1 Silent p.V1092V 0.34 TCGA-FS-A4FC-06 3 52554112 52554112 G A STAB1 Silent p.R1796R 0.28 TCGA-FS-A4FC-06 3 65346915 65346915 C G MAGI1 Missense_Mutation p.R1198P 0.23 deleterious(0.03) probably_damaging(0.983) TCGA-FS-A4FC-06 3 68788312 68788312 G A FAM19A4 Missense_Mutation p.P109S 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 3 7494450 7494450 G A GRM7 Missense_Mutation p.G444E 0.15 tolerated(0.14) benign(0.022) TCGA-FS-A4FC-06 3 7494457 7494457 G A GRM7 Silent p.K446K 0.36 TCGA-FS-A4FC-06 3 95374490 95374490 C T MTHFD2P1 RNA 0.25 TCGA-FS-A4FC-06 3 96706813 96706813 G A EPHA6 Missense_Mutation p.E364K 0.27 deleterious(0) possibly_damaging(0.858) TCGA-FS-A4FC-06 3 98188783 98188783 C T OR5K1 Silent p.D121D 0.28 TCGA-FS-A4FC-06 4 106156562 106156562 A G TET2 Missense_Mutation p.N488S 0.29 tolerated(0.43) benign(0.014) TCGA-FS-A4FC-06 4 110790861 110790861 C A LRIT3 Missense_Mutation p.S319Y 0.31 deleterious(0) probably_damaging(0.945) TCGA-FS-A4FC-06 4 11401009 11401009 G A HS3ST1 Silent p.F207F 0.36 TCGA-FS-A4FC-06 4 11401558 11401558 C T HS3ST1 Silent p.E24E 0.40 TCGA-FS-A4FC-06 4 123336636 123336636 G A ADAD1 Missense_Mutation p.R451K 0.23 tolerated(0.1) possibly_damaging(0.734) TCGA-FS-A4FC-06 4 126239578 126239578 C T FAT4 Missense_Mutation p.S671L 0.22 probably_damaging(0.997) TCGA-FS-A4FC-06 4 15444569 15444569 G A C1QTNF7 3'UTR 0.36 TCGA-FS-A4FC-06 4 156864341 156864341 G A CTSO Nonsense_Mutation p.Q71* 0.23 TCGA-FS-A4FC-06 4 157693921 157693921 C T PDGFC Missense_Mutation p.R207K 0.25 tolerated(0.27) possibly_damaging(0.625) TCGA-FS-A4FC-06 4 159154116 159154116 T C TMEM144 Silent p.T159T 0.30 TCGA-FS-A4FC-06 4 162508677 162508677 G A FSTL5 Silent p.H315H 0.25 TCGA-FS-A4FC-06 4 164247611 164247611 A G NPY1R Silent p.D32D 0.26 TCGA-FS-A4FC-06 4 169612443 169612443 G A PALLD Missense_Mutation p.E501K 0.27 deleterious(0.02) benign(0.303) TCGA-FS-A4FC-06 4 183574952 183574952 G A TENM3 Silent p.Q339Q 0.46 TCGA-FS-A4FC-06 4 2195030 2195030 G A POLN Nonsense_Mutation p.Q308* 0.22 TCGA-FS-A4FC-06 4 25005714 25005714 G A LGI2 Nonsense_Mutation p.Q333* 0.30 TCGA-FS-A4FC-06 4 3024175 3024175 C T GRK4 Missense_Mutation p.R323C 0.28 tolerated(0.08) benign(0.082) TCGA-FS-A4FC-06 4 37903742 37903742 G A TBC1D1 Missense_Mutation p.R9K 0.28 tolerated_low_confidence(0.63) benign(0.001) TCGA-FS-A4FC-06 4 38774977 38774977 C T TLR10 Silent p.L745L 0.30 TCGA-FS-A4FC-06 4 41984870 41984870 C T DCAF4L1 Missense_Mutation p.S354F 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-FS-A4FC-06 4 48088624 48088624 G A TXK Missense_Mutation p.A272V 0.26 tolerated(0.2) benign(0.174) TCGA-FS-A4FC-06 4 48530055 48530055 G A FRYL Missense_Mutation p.T2358I 0.37 deleterious(0) probably_damaging(0.989) TCGA-FS-A4FC-06 4 54876273 54876273 G A CHIC2 Nonsense_Mutation p.R163* 0.30 TCGA-FS-A4FC-06 4 55127399 55127399 G A PDGFRA Missense_Mutation p.E63K 0.24 tolerated(0.59) benign(0.102) TCGA-FS-A4FC-06 4 55129947 55129947 T G PDGFRA Missense_Mutation p.L161V 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A4FC-06 4 57514856 57514856 G A HOPX 3'UTR 0.18 TCGA-FS-A4FC-06 4 65165729 65165729 C T TECRL Missense_Mutation p.G246E 0.33 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 4 68930587 68930587 C T TMPRSS11F Silent p.R277R 0.28 TCGA-FS-A4FC-06 4 71201872 71201872 G A CABS1 Silent p.K372K 0.30 TCGA-FS-A4FC-06 4 71347291 71347291 C T MUC7 Missense_Mutation p.P277L 0.23 tolerated_low_confidence(1) unknown(0) TCGA-FS-A4FC-06 4 7436358 7436358 C T PSAPL1 Silent p.T83T 0.26 TCGA-FS-A4FC-06 4 77003191 77003191 G A ART3 Missense_Mutation p.G95E 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 4 8603098 8603098 G A CPZ Missense_Mutation p.G124S 0.46 tolerated(0.43) benign(0.006) TCGA-FS-A4FC-06 4 9784482 9784482 G A DRD5 Missense_Mutation p.A277T 0.20 tolerated(0.53) benign(0.014) TCGA-FS-A4FC-06 4 9784682 9784682 C T DRD5 Silent p.V343V 0.17 TCGA-FS-A4FC-06 5 102338740 102338740 G A PAM Silent p.S539S 0.26 TCGA-FS-A4FC-06 5 102361015 102361015 G A PAM Nonsense_Mutation p.W889* 0.31 TCGA-FS-A4FC-06 5 110428013 110428013 G A WDR36 Silent p.R9R 0.19 TCGA-FS-A4FC-06 5 121758871 121758871 G A SNCAIP Missense_Mutation p.D147N 0.26 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FC-06 5 127640772 127640772 G A FBN2 Missense_Mutation p.R1893C 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-FS-A4FC-06 5 127666379 127666379 C T FBN2 Missense_Mutation p.E1411K 0.21 deleterious(0) possibly_damaging(0.881) TCGA-FS-A4FC-06 5 132159880 132159880 G A SHROOM1 Silent p.P491P 0.21 TCGA-FS-A4FC-06 5 13727712 13727712 C T DNAH5 Silent p.E3979E 0.31 TCGA-FS-A4FC-06 5 13769113 13769113 C T DNAH5 Missense_Mutation p.E3285K 0.26 possibly_damaging(0.621) TCGA-FS-A4FC-06 5 13841188 13841188 G A DNAH5 Missense_Mutation p.L1846F 0.24 possibly_damaging(0.587) TCGA-FS-A4FC-06 5 13871781 13871781 G A DNAH5 Missense_Mutation p.P1164S 0.30 possibly_damaging(0.641) TCGA-FS-A4FC-06 5 13885216 13885216 G A DNAH5 Silent p.A955A 0.27 TCGA-FS-A4FC-06 5 139060330 139060330 C T CXXC5 Silent p.R74R 0.26 TCGA-FS-A4FC-06 5 140175493 140175493 C T PCDHA2 Missense_Mutation p.S315F 0.30 tolerated_low_confidence(0.63) benign(0.002) TCGA-FS-A4FC-06 5 140188228 140188228 G A PCDHA4 Missense_Mutation p.E486K 0.34 deleterious_low_confidence(0) benign(0.182) TCGA-FS-A4FC-06 5 140203743 140203743 C T PCDHA5 Intron 0.23 TCGA-FS-A4FC-06 5 140215098 140215098 G A PCDHA7 Missense_Mutation p.R377Q 0.25 tolerated_low_confidence(0.1) benign(0.055) TCGA-FS-A4FC-06 5 140530097 140530097 G A PCDHB6 Missense_Mutation p.E87K 0.25 deleterious(0.03) benign(0.35) TCGA-FS-A4FC-06 5 140581155 140581155 C T PCDHB11 Missense_Mutation p.S603L 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FS-A4FC-06 5 140712259 140712259 G A PCDHGA1 Missense_Mutation p.D670N 0.24 deleterious_low_confidence(0.01) benign(0.109) TCGA-FS-A4FC-06 5 140719540 140719540 C T PCDHGA2 Silent p.I334I 0.27 TCGA-FS-A4FC-06 5 140866808 140866808 A G PCDHGC4 Missense_Mutation p.T690A 0.27 deleterious(0.02) probably_damaging(0.945) TCGA-FS-A4FC-06 5 145500038 145500038 G A LARS Missense_Mutation p.P1074L 0.30 deleterious(0.01) benign(0.394) TCGA-FS-A4FC-06 5 156381661 156381661 C G TIMD4 Silent p.G55G 0.35 TCGA-FS-A4FC-06 5 156589810 156589810 C T FAM71B Missense_Mutation p.R489K 0.21 tolerated(0.79) benign(0.044) TCGA-FS-A4FC-06 5 156589940 156589940 G A FAM71B Missense_Mutation p.H446Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 5 159680298 159680298 G A CCNJL 3'UTR 0.41 TCGA-FS-A4FC-06 5 160721324 160721324 C T GABRB2 Missense_Mutation p.D435N 0.28 tolerated(0.1) benign(0.071) TCGA-FS-A4FC-06 5 168093455 168093455 G A SLIT3 3'UTR 0.21 TCGA-FS-A4FC-06 5 170814853 170814853 C T NPM1 5'UTR 0.31 TCGA-FS-A4FC-06 5 171520703 171520703 G A STK10 Nonsense_Mutation p.Q423* 0.44 TCGA-FS-A4FC-06 5 172195898 172195898 G A DUSP1 Missense_Mutation p.P324L 0.31 deleterious(0.01) possibly_damaging(0.689) TCGA-FS-A4FC-06 5 174868954 174868954 C T DRD1 Silent p.K383K 0.28 TCGA-FS-A4FC-06 5 180326265 180326265 C T BTNL8 5'UTR 0.23 TCGA-FS-A4FC-06 5 19747261 19747261 C T CDH18 Missense_Mutation p.D105N 0.31 deleterious(0.02) possibly_damaging(0.452) TCGA-FS-A4FC-06 5 32230067 32230067 G A MTMR12 Silent p.A687A 0.21 TCGA-FS-A4FC-06 5 33881304 33881304 G A ADAMTS12 Missense_Mutation p.P137S 0.24 tolerated(0.44) benign(0.018) TCGA-FS-A4FC-06 5 33881305 33881305 G A ADAMTS12 Silent p.A136A 0.25 TCGA-FS-A4FC-06 5 35873639 35873639 G A IL7R Missense_Mutation p.A199T 0.29 tolerated(0.09) benign(0.063) TCGA-FS-A4FC-06 5 38958577 38958577 G A RICTOR Silent p.H796H 0.31 TCGA-FS-A4FC-06 5 41038976 41038976 C T MROH2B Silent p.G692G 0.18 TCGA-FS-A4FC-06 5 45262127 45262127 G A HCN1 Missense_Mutation p.P857S 0.23 tolerated_low_confidence(0.37) benign(0.002) TCGA-FS-A4FC-06 5 52206085 52206085 G A ITGA1 Missense_Mutation p.E565K 0.34 deleterious(0) possibly_damaging(0.611) TCGA-FS-A4FC-06 5 63509920 63509920 C T RNF180 Missense_Mutation p.S256F 0.28 tolerated(0.7) benign(0.026) TCGA-FS-A4FC-06 5 64748621 64748621 C T ADAMTS6 Silent p.V252V 0.19 TCGA-FS-A4FC-06 5 68840766 68840766 C T OCLN Missense_Mutation p.S358L 0.21 tolerated(0.1) benign(0.006) TCGA-FS-A4FC-06 5 76128663 76128663 C T F2RL1 Silent p.F77F 0.23 TCGA-FS-A4FC-06 5 840527 840527 G A ZDHHC11 Intron 0.15 TCGA-FS-A4FC-06 5 876258 876258 G A BRD9 Silent p.I447I 0.33 TCGA-FS-A4FC-06 5 878589 878589 G A BRD9 Silent p.S384S 0.10 TCGA-FS-A4FC-06 5 89953743 89953743 G A GPR98 Missense_Mutation p.G1467E 0.29 probably_damaging(0.993) TCGA-FS-A4FC-06 5 89981753 89981753 G A GPR98 Missense_Mutation p.G2144E 0.30 probably_damaging(0.999) TCGA-FS-A4FC-06 5 90020670 90020670 C T GPR98 Missense_Mutation p.S3257F 0.26 possibly_damaging(0.831) TCGA-FS-A4FC-06 5 95734615 95734615 C T PCSK1 Missense_Mutation p.G519E 0.22 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 6 102503334 102503334 C T GRIK2 Missense_Mutation p.A814V 0.26 deleterious(0) possibly_damaging(0.685) TCGA-FS-A4FC-06 6 105816884 105816884 G A PREP Missense_Mutation p.T204I 0.32 tolerated(0.39) benign(0.007) TCGA-FS-A4FC-06 6 110550068 110550068 A G CDC40 Missense_Mutation p.Q484R 0.22 tolerated(0.29) benign(0.013) TCGA-FS-A4FC-06 6 117114062 117114062 G A GPRC6A Missense_Mutation p.S675F 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 6 117609813 117609813 C T ROS1 Missense_Mutation p.E2296K 0.26 deleterious_low_confidence(0.01) benign(0.242) TCGA-FS-A4FC-06 6 117639383 117639383 C T ROS1 Silent p.K1991K 0.20 TCGA-FS-A4FC-06 6 123319236 123319236 C T CLVS2 Missense_Mutation p.P105L 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 6 129371060 129371060 C T LAMA2 Intron 0.22 TCGA-FS-A4FC-06 6 136582572 136582572 C T BCLAF1 Missense_Mutation p.G863E 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-FS-A4FC-06 6 143081732 143081732 G A HIVEP2 Missense_Mutation p.S1898F 0.22 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 6 144835047 144835047 C T UTRN Silent p.N1649N 0.27 TCGA-FS-A4FC-06 6 148865248 148865248 C T SASH1 Missense_Mutation p.P881L 0.22 deleterious_low_confidence(0.03) benign(0.034) TCGA-FS-A4FC-06 6 148865249 148865249 C T SASH1 Silent p.P881P 0.22 TCGA-FS-A4FC-06 6 150267668 150267668 A T ULBP2 Missense_Mutation p.E170D 0.24 deleterious(0.03) benign(0.067) TCGA-FS-A4FC-06 6 150569882 150569882 G A PPP1R14C Missense_Mutation p.E142K 0.16 tolerated(0.65) possibly_damaging(0.739) TCGA-FS-A4FC-06 6 151894515 151894515 G A CCDC170 Silent p.R327R 0.26 TCGA-FS-A4FC-06 6 155153624 155153624 C T SCAF8 Missense_Mutation p.P971S 0.29 tolerated_low_confidence(0.11) possibly_damaging(0.656) TCGA-FS-A4FC-06 6 158534506 158534506 G A SERAC1 Silent p.L601L 0.25 TCGA-FS-A4FC-06 6 160327991 160327991 G A MAS1 Missense_Mutation p.D2N 0.25 tolerated_low_confidence(0.08) benign(0.193) TCGA-FS-A4FC-06 6 160953678 160953678 G A LPA Missense_Mutation p.T1949I 0.19 tolerated(0.09) benign(0.118) TCGA-FS-A4FC-06 6 168467458 168467458 G A FRMD1 Silent p.Y146Y 0.42 TCGA-FS-A4FC-06 6 26508829 26508829 G A BTN1A1 Silent p.E336E 0.28 TCGA-FS-A4FC-06 6 29323552 29323552 A G OR5V1 Missense_Mutation p.C141R 0.18 deleterious(0.02) possibly_damaging(0.772) TCGA-FS-A4FC-06 6 30658790 30658790 G A NRM 5'UTR 0.40 TCGA-FS-A4FC-06 6 31777717 31777717 G A HSPA1L 3'UTR 0.32 TCGA-FS-A4FC-06 6 31935611 31935611 C T SKIV2L Silent p.L901L 0.33 TCGA-FS-A4FC-06 6 32190365 32190365 G A NOTCH4 Missense_Mutation p.S125F 0.22 tolerated(0.21) benign(0.004) TCGA-FS-A4FC-06 6 32974442 32974442 C T HLA-DOA 3'UTR 0.20 TCGA-FS-A4FC-06 6 33744783 33744783 G A LEMD2 Missense_Mutation p.P437S 0.27 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 6 34499489 34499489 G A PACSIN1 Missense_Mutation p.D384N 0.33 tolerated(0.13) possibly_damaging(0.647) TCGA-FS-A4FC-06 6 37623548 37623548 C T MDGA1 Nonsense_Mutation p.W169* 0.21 TCGA-FS-A4FC-06 6 43414039 43414039 C A ABCC10 Silent p.L1133L 0.27 TCGA-FS-A4FC-06 6 49802907 49802907 C T CRISP1 3'UTR 0.24 TCGA-FS-A4FC-06 6 49825110 49825110 C T CRISP1 Missense_Mutation p.E2K 0.22 tolerated(0.36) benign(0) TCGA-FS-A4FC-06 6 53747712 53747712 G A LRRC1 Silent p.Q128Q 0.20 TCGA-FS-A4FC-06 6 55264214 55264214 C T GFRAL Missense_Mutation p.L366F 0.24 tolerated(0.1) benign(0.086) TCGA-FS-A4FC-06 6 7580990 7580990 G A DSP Missense_Mutation p.E1523K 0.22 probably_damaging(0.986) TCGA-FS-A4FC-06 6 76023211 76023211 G A FILIP1 Silent p.S779S 0.34 TCGA-FS-A4FC-06 6 7845453 7845453 G A BMP6 Missense_Mutation p.E249K 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-FS-A4FC-06 6 80626597 80626597 G A ELOVL4 Nonsense_Mutation p.Q225* 0.30 TCGA-FS-A4FC-06 6 82937003 82937003 A T IBTK Missense_Mutation p.F187Y 0.25 tolerated(0.16) benign(0.239) TCGA-FS-A4FC-06 7 100417334 100417334 G A EPHB4 Missense_Mutation p.P381L 0.26 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 100608232 100608232 C T MUC3A Intron 0.36 TCGA-FS-A4FC-06 7 100687012 100687012 C T MUC17 Silent p.F4105F 0.21 TCGA-FS-A4FC-06 7 107626774 107626774 G A LAMB1 Missense_Mutation p.S153L 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 11076096 11076096 C T PHF14 Nonsense_Mutation p.R552* 0.17 TCGA-FS-A4FC-06 7 116918072 116918072 G A WNT2 3'UTR 0.29 TCGA-FS-A4FC-06 7 117003585 117003585 T C ASZ1 3'UTR 0.41 TCGA-FS-A4FC-06 7 120446608 120446608 G A TSPAN12 Nonsense_Mutation p.Q203* 0.29 TCGA-FS-A4FC-06 7 123097534 123097534 C T IQUB Missense_Mutation p.M698I 0.26 tolerated(0.07) benign(0.04) TCGA-FS-A4FC-06 7 123136850 123136850 C T IQUB Silent p.R378R 0.33 TCGA-FS-A4FC-06 7 123270105 123270105 C T ASB15 Missense_Mutation p.P509L 0.28 tolerated(0.11) benign(0.165) TCGA-FS-A4FC-06 7 127253124 127253124 C T PAX4 Missense_Mutation p.A215T 0.19 deleterious(0) possibly_damaging(0.869) TCGA-FS-A4FC-06 7 130038682 130038682 G A CEP41 3'UTR 0.23 TCGA-FS-A4FC-06 7 132990750 132990750 C T EXOC4 Silent p.H197H 0.31 TCGA-FS-A4FC-06 7 134346437 134346437 C T BPGM Missense_Mutation p.L60F 0.24 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 134871868 134871868 G A WDR91 Silent p.L645L 0.27 TCGA-FS-A4FC-06 7 137206693 137206693 G A DGKI Missense_Mutation p.R723C 0.19 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 7 137237251 137237251 T C DGKI Missense_Mutation p.T671A 0.30 deleterious(0) possibly_damaging(0.765) TCGA-FS-A4FC-06 7 138394392 138394392 G A ATP6V0A4 Silent p.F802F 0.22 TCGA-FS-A4FC-06 7 138946166 138946166 C T UBN2 Silent p.P358P 0.28 TCGA-FS-A4FC-06 7 139086975 139086975 T A LUC7L2 Missense_Mutation p.S182R 0.23 tolerated(0.18) probably_damaging(0.985) TCGA-FS-A4FC-06 7 139741542 139741542 C T PARP12 Missense_Mutation p.A362T 0.32 deleterious(0.04) possibly_damaging(0.776) TCGA-FS-A4FC-06 7 139824491 139824491 G A KDM7A Silent p.F327F 0.29 TCGA-FS-A4FC-06 7 140156416 140156416 G T MKRN1 Intron 0.34 TCGA-FS-A4FC-06 7 141629784 141629784 C T CLEC5A 3'UTR 0.24 TCGA-FS-A4FC-06 7 141672781 141672781 G A TAS2R38 Missense_Mutation p.P237S 0.25 tolerated(0.08) benign(0.403) TCGA-FS-A4FC-06 7 141726990 141726990 G A MGAM Missense_Mutation p.G353E 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 141731573 141731573 G A MGAM Missense_Mutation p.E522K 0.24 tolerated(0.95) benign(0.002) TCGA-FS-A4FC-06 7 141802440 141802440 G A MGAM Silent p.G1762G 0.26 TCGA-FS-A4FC-06 7 142119937 142119937 G A TRBV7-7 Missense_Mutation p.S77L 0.24 deleterious(0.02) possibly_damaging(0.78) TCGA-FS-A4FC-06 7 143747855 143747855 G A OR2A5 Missense_Mutation p.D121N 0.29 deleterious(0) probably_damaging(0.978) TCGA-FS-A4FC-06 7 150171112 150171112 G A GIMAP8 Missense_Mutation p.R232K 0.25 tolerated(0.59) benign(0.012) TCGA-FS-A4FC-06 7 150325056 150325056 G A GIMAP6 Silent p.A210A 0.25 TCGA-FS-A4FC-06 7 150713833 150713833 G A ATG9B Missense_Mutation p.P788L 0.23 tolerated(0.07) possibly_damaging(0.818) TCGA-FS-A4FC-06 7 150721039 150721039 C T ATG9B Missense_Mutation p.D158N 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-FS-A4FC-06 7 150839270 150839270 C G AGAP3 Missense_Mutation p.N660K 0.23 deleterious(0.04) benign(0.421) TCGA-FS-A4FC-06 7 17370472 17370472 C G AHR Missense_Mutation p.R223G 0.31 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 20403340 20403340 C T ITGB8 Nonsense_Mutation p.Q70* 0.38 TCGA-FS-A4FC-06 7 23682576 23682576 C T CCDC126 Missense_Mutation p.L89F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 7 34867067 34867067 C T NPSR1 Missense_Mutation p.S178F 0.23 deleterious(0) probably_damaging(0.967) TCGA-FS-A4FC-06 7 36450141 36450141 C T ANLN Missense_Mutation p.P372L 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-FS-A4FC-06 7 43547663 43547663 G A HECW1 Missense_Mutation p.V1267M 0.31 deleterious(0) probably_damaging(0.91) TCGA-FS-A4FC-06 7 44579069 44579069 G A NPC1L1 Silent p.P309P 0.28 TCGA-FS-A4FC-06 7 47886646 47886646 A T PKD1L1 Missense_Mutation p.L1662I 0.43 tolerated(0.1) possibly_damaging(0.831) TCGA-FS-A4FC-06 7 47886647 47886647 G A PKD1L1 Silent p.S1661S 0.46 TCGA-FS-A4FC-06 7 53103787 53103787 C T POM121L12 Silent p.I141I 0.28 TCGA-FS-A4FC-06 7 6045616 6045616 G A PMS2 Missense_Mutation p.H24Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 7 720202 720202 G A PRKAR1B Silent p.Y113Y 0.42 TCGA-FS-A4FC-06 7 72658175 72658175 G A GTF2IRD2P1 RNA 0.33 TCGA-FS-A4FC-06 7 73638359 73638359 G A LAT2 Missense_Mutation p.E154K 0.23 tolerated(0.82) benign(0) TCGA-FS-A4FC-06 7 74564691 74564691 C T GTF2IRD2B Missense_Mutation p.S813F 0.26 tolerated(0.05) probably_damaging(0.991) TCGA-FS-A4FC-06 7 75053355 75053355 G A POM121C Missense_Mutation p.P342L 0.19 deleterious(0.04) benign(0.058) TCGA-FS-A4FC-06 7 77408509 77408509 C T RSBN1L 3'UTR 0.16 TCGA-FS-A4FC-06 7 80091888 80091888 C T GNAT3 Missense_Mutation p.G217E 0.34 deleterious(0.05) probably_damaging(1) TCGA-FS-A4FC-06 7 8258108 8258108 G A ICA1 Nonsense_Mutation p.R136* 0.29 TCGA-FS-A4FC-06 7 82581373 82581373 G A PCLO Missense_Mutation p.R2966C 0.24 unknown(0) TCGA-FS-A4FC-06 7 82586111 82586111 C T PCLO Silent p.K1386K 0.27 TCGA-FS-A4FC-06 7 84671525 84671525 G A SEMA3D Missense_Mutation p.P313L 0.29 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 7 86415685 86415685 C T GRM3 Missense_Mutation p.P193S 0.22 tolerated(0.09) probably_damaging(1) TCGA-FS-A4FC-06 7 89854874 89854874 G A STEAP2 Missense_Mutation p.D160N 0.32 deleterious(0.03) benign(0.09) TCGA-FS-A4FC-06 7 89861701 89861701 T A STEAP2 Silent p.I412I 0.17 TCGA-FS-A4FC-06 7 92762118 92762118 G A SAMD9L Missense_Mutation p.S1056F 0.30 deleterious(0) probably_damaging(0.987) TCGA-FS-A4FC-06 8 101084398 101084398 C T RGS22 Missense_Mutation p.E134K 0.26 tolerated(0.21) benign(0.399) TCGA-FS-A4FC-06 8 105510108 105510108 G A LRP12 Silent p.S224S 0.29 TCGA-FS-A4FC-06 8 109796603 109796603 C T TMEM74 Missense_Mutation p.G242E 0.28 deleterious(0) probably_damaging(1) TCGA-FS-A4FC-06 8 113316976 113316976 C T CSMD3 Nonsense_Mutation p.W2747* 0.31 TCGA-FS-A4FC-06 8 120118435 120118435 C T COLEC10 3'UTR 0.22 TCGA-FS-A4FC-06 8 121476001 121476001 G A MTBP Silent p.K349K 0.30 TCGA-FS-A4FC-06 8 125989792 125989792 G A ZNF572 Missense_Mutation p.V428M 0.27 deleterious(0.03) benign(0.1) TCGA-FS-A4FC-06 8 133650317 133650317 T A LRRC6 Missense_Mutation p.N98I 0.23 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 8 133923693 133923693 C T TG Silent p.T1358T 0.34 TCGA-FS-A4FC-06 8 139153476 139153476 C T FAM135B Missense_Mutation p.G1252E 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 8 139164489 139164489 G A FAM135B Silent p.I743I 0.27 TCGA-FS-A4FC-06 8 139606407 139606407 C T COL22A1 Missense_Mutation p.A1490T 0.30 unknown(0) TCGA-FS-A4FC-06 8 142445269 142445269 C T PTP4A3 3'Flank 0.22 TCGA-FS-A4FC-06 8 143623447 143623447 C T BAI1 Silent p.S1284S 0.33 TCGA-FS-A4FC-06 8 144124457 144124457 G A C8orf31 Silent p.V13V 0.25 TCGA-FS-A4FC-06 8 144945633 144945633 C T EPPK1 Missense_Mutation p.G597S 0.31 benign(0.006) TCGA-FS-A4FC-06 8 144945634 144945634 C T EPPK1 Silent p.V596V 0.31 TCGA-FS-A4FC-06 8 146156034 146156034 C T ZNF16 3'UTR 0.33 TCGA-FS-A4FC-06 8 16850796 16850796 C T FGF20 Missense_Mutation p.E141K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 8 22006032 22006032 G A LGI3 Missense_Mutation p.R430C 0.22 deleterious(0) possibly_damaging(0.744) TCGA-FS-A4FC-06 8 24254940 24254940 C T ADAMDEC1 Nonsense_Mutation p.R200* 0.33 TCGA-FS-A4FC-06 8 30701991 30701991 G A TEX15 Missense_Mutation p.H1515Y 0.27 tolerated(0.08) benign(0.027) TCGA-FS-A4FC-06 8 36698091 36698091 C T KCNU1 Silent p.A543A 0.21 TCGA-FS-A4FC-06 8 37692835 37692835 C T GPR124 Silent p.P584P 0.32 TCGA-FS-A4FC-06 8 37702335 37702335 G A BRF2 Silent p.A311A 0.26 TCGA-FS-A4FC-06 8 38065149 38065149 C T BAG4 Silent p.S166S 0.32 TCGA-FS-A4FC-06 8 39646194 39646194 C T ADAM2 Silent p.T212T 0.25 TCGA-FS-A4FC-06 8 40011145 40011145 C T C8orf4 Missense_Mutation p.R32C 0.28 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FC-06 8 48713417 48713417 G A PRKDC Silent p.I3350I 0.27 TCGA-FS-A4FC-06 8 53071651 53071651 G A ST18 Missense_Mutation p.P538L 0.18 deleterious(0.01) benign(0.247) TCGA-FS-A4FC-06 8 53853378 53853378 C T NPBWR1 Missense_Mutation p.P304L 0.26 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FC-06 8 53853379 53853379 C T NPBWR1 Silent p.P304P 0.27 TCGA-FS-A4FC-06 8 55538936 55538936 G A RP1 Missense_Mutation p.D832N 0.28 tolerated(0.06) benign(0.034) TCGA-FS-A4FC-06 8 55539605 55539605 G A RP1 Missense_Mutation p.E1055K 0.26 tolerated(0.1) benign(0.027) TCGA-FS-A4FC-06 8 55540286 55540286 C T RP1 Missense_Mutation p.P1282S 0.34 tolerated(0.14) benign(0.01) TCGA-FS-A4FC-06 8 55541830 55541830 G A RP1 Silent p.T1796T 0.36 TCGA-FS-A4FC-06 8 56435906 56435906 G A XKR4 Missense_Mutation p.R358Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-FS-A4FC-06 8 57228802 57228802 C T SDR16C5 Silent p.R35R 0.23 TCGA-FS-A4FC-06 8 67047236 67047236 A T TRIM55 Missense_Mutation p.K118I 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FC-06 8 67049401 67049401 G A TRIM55 Silent p.L193L 0.27 TCGA-FS-A4FC-06 8 70971075 70971075 A C PRDM14 Missense_Mutation p.S396A 0.30 tolerated(0.33) benign(0.005) TCGA-FS-A4FC-06 8 73848865 73848865 G A KCNB2 Silent p.K425K 0.20 TCGA-FS-A4FC-06 8 77764222 77764222 C T ZFHX4 Nonsense_Mutation p.Q1689* 0.24 TCGA-FS-A4FC-06 8 95186442 95186442 G A CDH17 Silent p.A157A 0.26 TCGA-FS-A4FC-06 8 95778881 95778881 C T DPY19L4 Silent p.F381F 0.22 TCGA-FS-A4FC-06 9 104432870 104432870 C T GRIN3A Nonsense_Mutation p.W608* 0.36 TCGA-FS-A4FC-06 9 117552618 117552618 G A TNFSF15 3'UTR 0.37 TCGA-FS-A4FC-06 9 125424836 125424836 C T OR1L1 Missense_Mutation p.T281I 0.39 tolerated(0.06) benign(0.344) TCGA-FS-A4FC-06 9 130941631 130941631 G A CIZ1 Silent p.A285A 0.37 TCGA-FS-A4FC-06 9 132510954 132510954 G A PTGES Silent p.P63P 0.33 TCGA-FS-A4FC-06 9 132510955 132510955 G A PTGES Missense_Mutation p.P63L 0.38 deleterious(0.05) benign(0.186) TCGA-FS-A4FC-06 9 132637876 132637876 G A USP20 Silent p.L752L 0.39 TCGA-FS-A4FC-06 9 135139535 135139535 A C SETX 3'UTR 0.45 TCGA-FS-A4FC-06 9 137688727 137688727 C T COL5A1 Missense_Mutation p.P960S 0.27 unknown(0) TCGA-FS-A4FC-06 9 139905958 139905958 G A ABCA2 Silent p.V1900V 0.36 TCGA-FS-A4FC-06 9 2039706 2039706 C T SMARCA2 Missense_Mutation p.P199L 0.37 probably_damaging(0.996) TCGA-FS-A4FC-06 9 23731084 23731084 G A ELAVL2 Missense_Mutation p.P90L 0.35 tolerated(0.08) possibly_damaging(0.545) TCGA-FS-A4FC-06 9 33464970 33464970 G A NOL6 Missense_Mutation p.P896S 0.40 deleterious(0.02) possibly_damaging(0.883) TCGA-FS-A4FC-06 9 35802771 35802771 C T NPR2 Missense_Mutation p.R620C 0.45 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FC-06 9 7174837 7174837 G A KDM4C 3'UTR 0.46 TCGA-FS-A4FC-06 9 79323881 79323881 G A PRUNE2 Silent p.N1103N 0.42 TCGA-FS-A4FC-06 9 79852917 79852917 G A VPS13A Splice_Site p.X532_splice 0.49 TCGA-FS-A4FC-06 9 8485953 8485953 G A PTPRD Missense_Mutation p.T955I 0.28 tolerated(0.08) probably_damaging(0.996) TCGA-FS-A4FC-06 X 101091804 101091804 C T NXF5 Intron 0.48 TCGA-FS-A4FC-06 X 105189954 105189954 C T NRK Missense_Mutation p.P1385S 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FS-A4FC-06 X 114141766 114141766 G A HTR2C Missense_Mutation p.V389I 0.42 tolerated(0.12) benign(0.001) TCGA-FS-A4FC-06 X 119037502 119037502 G A AKAP14 Missense_Mutation p.E72K 0.35 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FC-06 X 128696421 128696421 C T OCRL Nonsense_Mutation p.R334* 0.40 TCGA-FS-A4FC-06 X 129162698 129162698 C T BCORL1 Silent p.V1389V 0.42 TCGA-FS-A4FC-06 X 134856771 134856771 G A CT45A1 Silent p.K182K 0.05 TCGA-FS-A4FC-06 X 135429699 135429699 C T GPR112 Silent p.S1278S 0.35 TCGA-FS-A4FC-06 X 135429708 135429708 G A GPR112 Silent p.K1281K 0.36 TCGA-FS-A4FC-06 X 138857016 138857016 G A ATP11C Silent p.S686S 0.43 TCGA-FS-A4FC-06 X 139038760 139038760 C T CXorf66 Silent p.R127R 0.42 TCGA-FS-A4FC-06 X 140785745 140785745 C T SPANXD Silent p.R57R 0.37 TCGA-FS-A4FC-06 X 140995047 140995047 G A MAGEC1 Silent p.E619E 0.39 TCGA-FS-A4FC-06 X 141290528 141290528 C T MAGEC2 3'UTR 0.50 TCGA-FS-A4FC-06 X 150841035 150841035 G A PASD1 Silent p.Q606Q 0.38 TCGA-FS-A4FC-06 X 150868628 150868628 G A PRRG3 Silent p.T56T 0.42 TCGA-FS-A4FC-06 X 154159268 154159268 C T F8 Missense_Mutation p.D933N 0.47 tolerated(0.47) benign(0) TCGA-FS-A4FC-06 X 20030588 20030588 G A MAP7D2 Missense_Mutation p.P651S 0.05 tolerated(0.2) unknown(0) TCGA-FS-A4FC-06 X 34148806 34148806 G A FAM47A Silent p.L530L 0.32 TCGA-FS-A4FC-06 X 34962223 34962223 G A FAM47B Silent p.P425P 0.39 TCGA-FS-A4FC-06 X 38146056 38146056 C T RPGR Silent p.E732E 0.27 TCGA-FS-A4FC-06 X 39933057 39933057 T C BCOR Silent p.P514P 0.30 TCGA-FS-A4FC-06 X 47269705 47269705 G A ZNF157 Missense_Mutation p.D35N 0.34 tolerated(0.06) probably_damaging(0.95) TCGA-FS-A4FC-06 X 48318136 48318136 C T SLC38A5 Missense_Mutation p.D399N 0.23 tolerated(0.31) probably_damaging(0.952) TCGA-FS-A4FC-06 X 50053842 50053842 C T CCNB3 Silent p.I891I 0.50 TCGA-FS-A4FC-06 X 50054462 50054462 C T CCNB3 Missense_Mutation p.P1098L 0.49 tolerated(0.36) benign(0.01) TCGA-FS-A4FC-06 X 52825254 52825254 C T SPANXN5 3'UTR 0.42 TCGA-FS-A4FC-06 X 55650710 55650710 C T FOXR2 Missense_Mutation p.S189F 0.45 tolerated(0.26) possibly_damaging(0.691) TCGA-FS-A4FC-06 X 65486494 65486494 C T HEPH Missense_Mutation p.L1207F 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A4FC-06 X 69722078 69722078 T C DLG3 Missense_Mutation p.S805P 0.30 deleterious(0) benign(0.148) TCGA-FS-A4FC-06 X 99917271 99917271 G A SRPX2 Missense_Mutation p.E88K 0.52 tolerated(0.44) benign(0.266) TCGA-FS-A4FD-06 10 105939630 105939630 C T WDR96 Missense_Mutation p.E784K 0.28 tolerated(0.08) benign(0.044) TCGA-FS-A4FD-06 10 115973754 115973754 G A TDRD1 Missense_Mutation p.G698E 0.38 tolerated(0.98) benign(0.362) TCGA-FS-A4FD-06 10 126448969 126448969 G A METTL10 3'UTR 0.75 TCGA-FS-A4FD-06 10 18837064 18837064 G A NSUN6 Missense_Mutation p.P392S 0.24 tolerated(0.05) probably_damaging(0.994) TCGA-FS-A4FD-06 10 22653927 22653927 T A SPAG6 Silent p.V89V 0.28 TCGA-FS-A4FD-06 10 24835102 24835102 C T KIAA1217 Missense_Mutation p.S1894F 0.15 deleterious(0) possibly_damaging(0.713) TCGA-FS-A4FD-06 10 26508081 26508081 G A GAD2 Silent p.V132V 0.15 TCGA-FS-A4FD-06 10 30318511 30318511 C T KIAA1462 Nonsense_Mutation p.W189* 0.33 TCGA-FS-A4FD-06 10 31809369 31809369 C T ZEB1 Missense_Mutation p.P370L 0.11 deleterious(0.01) possibly_damaging(0.54) TCGA-FS-A4FD-06 10 37505144 37505144 C T ANKRD30A Missense_Mutation p.H913Y 0.45 tolerated(1) benign(0.043) TCGA-FS-A4FD-06 10 46999107 46999107 G A GPRIN2 Missense_Mutation p.R76Q 0.16 tolerated(1) benign(0.001) TCGA-FS-A4FD-06 10 5567478 5567478 C T CALML3 Missense_Mutation p.R144C 0.39 deleterious_low_confidence(0.01) benign(0.045) TCGA-FS-A4FD-06 10 61432545 61432545 G A SLC16A9 Missense_Mutation p.S108F 0.10 deleterious(0) probably_damaging(0.987) TCGA-FS-A4FD-06 10 61835312 61835312 G A ANK3 Missense_Mutation p.S1776F 0.57 probably_damaging(0.979) TCGA-FS-A4FD-06 10 69921574 69921574 A T MYPN Intron 0.40 TCGA-FS-A4FD-06 10 75113453 75113453 G A TTC18 Silent p.F37F 0.17 TCGA-FS-A4FD-06 10 75408266 75408266 C T SYNPO2L Missense_Mutation p.E382K 0.24 deleterious(0.01) benign(0.242) TCGA-FS-A4FD-06 10 75434712 75434712 G A AGAP5 Missense_Mutation p.S569F 0.42 deleterious(0) possibly_damaging(0.637) TCGA-FS-A4FD-06 10 75607804 75607804 G A CAMK2G Missense_Mutation p.P213L 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4FD-06 10 84745299 84745299 G A NRG3 Missense_Mutation p.E677K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.758) TCGA-FS-A4FD-06 10 88717135 88717135 C T MMRN2 Missense_Mutation p.R55H 0.39 tolerated(0.07) possibly_damaging(0.543) TCGA-FS-A4FD-06 10 90490795 90490795 G A LIPK Nonsense_Mutation p.W93* 0.92 TCGA-FS-A4FD-06 10 90695113 90695113 G A ACTA2 Missense_Mutation p.P334L 0.33 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-FS-A4FD-06 10 96447882 96447882 G A CYP2C18 Missense_Mutation p.G111E 0.19 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 10 99995227 99995227 C T R3HCC1L Missense_Mutation p.P693L 0.21 deleterious(0.02) probably_damaging(0.924) TCGA-FS-A4FD-06 11 102709320 102709320 C T MMP3 Silent p.K397K 0.71 TCGA-FS-A4FD-06 11 102995975 102995975 T C DYNC2H1 Missense_Mutation p.V603A 0.56 benign(0.003) TCGA-FS-A4FD-06 11 108384754 108384754 G A EXPH5 Missense_Mutation p.H494Y 0.59 tolerated(0.38) benign(0.014) TCGA-FS-A4FD-06 11 108464184 108464184 C T EXPH5 Missense_Mutation p.R27K 0.62 deleterious(0.02) probably_damaging(0.986) TCGA-FS-A4FD-06 11 113288814 113288814 G A DRD2 Silent p.F110F 0.79 TCGA-FS-A4FD-06 11 12248673 12248673 C T MICAL2 Missense_Mutation p.P664S 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 11 122720899 122720899 C T CRTAM Missense_Mutation p.T57I 0.81 deleterious(0.04) probably_damaging(1) TCGA-FS-A4FD-06 11 123777605 123777605 C T OR8D4 Missense_Mutation p.A156V 0.69 deleterious(0) possibly_damaging(0.744) TCGA-FS-A4FD-06 11 128709905 128709905 G A KCNJ1 Silent p.L97L 0.61 TCGA-FS-A4FD-06 11 16760352 16760352 G A C11orf58 Silent p.P9P 0.07 TCGA-FS-A4FD-06 11 18478155 18478155 G A LDHAL6A 5'UTR 0.24 TCGA-FS-A4FD-06 11 18955522 18955522 G A MRGPRX1 Silent p.I270I 0.23 TCGA-FS-A4FD-06 11 31349771 31349771 G A DCDC1 Silent p.S19S 0.46 TCGA-FS-A4FD-06 11 32657337 32657337 C T CCDC73 Missense_Mutation p.E364K 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-FS-A4FD-06 11 34101304 34101304 C G CAPRIN1 Missense_Mutation p.P273R 0.27 tolerated(0.42) benign(0.035) TCGA-FS-A4FD-06 11 35454097 35454097 G A PAMR1 Missense_Mutation p.P674L 0.46 tolerated(0.78) benign(0.007) TCGA-FS-A4FD-06 11 40137207 40137207 G A LRRC4C Silent p.I212I 0.40 TCGA-FS-A4FD-06 11 46797828 46797828 C T CKAP5 Missense_Mutation p.E990K 0.52 tolerated(0.1) probably_damaging(0.934) TCGA-FS-A4FD-06 11 46880825 46880825 G A LRP4 Silent p.I1809I 0.37 TCGA-FS-A4FD-06 11 4825340 4825340 G A OR52R1 Missense_Mutation p.H91Y 0.32 deleterious(0.01) benign(0.303) TCGA-FS-A4FD-06 11 49178339 49178339 C T FOLH1 Missense_Mutation p.G518E 0.22 deleterious(0) probably_damaging(0.99) TCGA-FS-A4FD-06 11 5474874 5474874 G A OR51I2 Silent p.E52E 0.39 TCGA-FS-A4FD-06 11 55135474 55135474 G A OR4A15 Missense_Mutation p.E39K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-FS-A4FD-06 11 55135615 55135615 C T OR4A15 Missense_Mutation p.P86S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FS-A4FD-06 11 55418737 55418737 C T OR4S2 Missense_Mutation p.R120C 0.42 deleterious(0.01) benign(0.01) TCGA-FS-A4FD-06 11 55579578 55579578 G A OR5L1 Missense_Mutation p.M212I 0.48 tolerated(0.26) benign(0.001) TCGA-FS-A4FD-06 11 55579695 55579695 C T OR5L1 Silent p.F251F 0.51 TCGA-FS-A4FD-06 11 55873332 55873332 C T OR8H2 Nonsense_Mutation p.Q272* 0.45 TCGA-FS-A4FD-06 11 56043566 56043566 G A OR5T1 Missense_Mutation p.R151K 0.59 tolerated(0.12) benign(0.05) TCGA-FS-A4FD-06 11 56185463 56185463 C T OR5R1 Missense_Mutation p.M82I 0.14 deleterious(0.02) benign(0.02) TCGA-FS-A4FD-06 11 58126510 58126510 G A OR5B17 Silent p.I11I 0.26 TCGA-FS-A4FD-06 11 58207445 58207445 G A OR5B12 Silent p.F60F 0.33 TCGA-FS-A4FD-06 11 5862627 5862627 C T OR52E6 Silent p.R167R 0.39 TCGA-FS-A4FD-06 11 61897855 61897855 C T INCENP Silent p.L286L 0.46 TCGA-FS-A4FD-06 11 62948146 62948146 G A SLC22A25 Silent p.F352F 0.25 TCGA-FS-A4FD-06 11 66001405 66001405 C T PACS1 Missense_Mutation p.P663L 0.45 tolerated(0.06) probably_damaging(1) TCGA-FS-A4FD-06 11 66083116 66083116 A T CD248 Silent p.P461P 0.36 TCGA-FS-A4FD-06 11 67225864 67225864 G A CABP4 Missense_Mutation p.R225Q 0.24 tolerated(0.37) benign(0.125) TCGA-FS-A4FD-06 11 6912891 6912891 G A OR2D2 Missense_Mutation p.P281S 0.39 tolerated(0.16) possibly_damaging(0.51) TCGA-FS-A4FD-06 11 70333197 70333197 C T SHANK2 Silent p.R1068R 0.31 TCGA-FS-A4FD-06 11 71946393 71946393 C T INPPL1 Silent p.L853L 0.56 TCGA-FS-A4FD-06 11 7818330 7818330 G A OR5P2 Missense_Mutation p.P54S 0.39 deleterious(0.01) possibly_damaging(0.601) TCGA-FS-A4FD-06 11 8159983 8159983 G A RIC3 Intron 0.38 TCGA-FS-A4FD-06 12 104698747 104698747 T A EID3 3'UTR 0.40 TCGA-FS-A4FD-06 12 105282900 105282900 C T SLC41A2 Nonsense_Mutation p.W264* 0.39 TCGA-FS-A4FD-06 12 109702050 109702050 C T ACACB Silent p.L2267L 0.33 TCGA-FS-A4FD-06 12 11149991 11149991 C T TAS2R20 Missense_Mutation p.V162I 0.07 tolerated(0.55) benign(0.027) TCGA-FS-A4FD-06 12 11461398 11461398 G A PRB4 Silent p.S173S 0.39 TCGA-FS-A4FD-06 12 11546518 11546518 T G PRB2 Missense_Mutation p.Q165P 0.17 tolerated(0.21) unknown(0) TCGA-FS-A4FD-06 12 117723046 117723046 C T NOS1 Missense_Mutation p.R461K 0.28 deleterious(0.02) benign(0.067) TCGA-FS-A4FD-06 12 120572431 120572431 C T GCN1L1 Missense_Mutation p.A2370T 0.40 possibly_damaging(0.722) TCGA-FS-A4FD-06 12 123262141 123262141 T A CCDC62 Missense_Mutation p.M47K 0.35 deleterious(0) probably_damaging(0.981) TCGA-FS-A4FD-06 12 126137093 126137093 C T TMEM132B Missense_Mutation p.S669F 0.38 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FD-06 12 130184379 130184379 G A TMEM132D Missense_Mutation p.S315F 0.48 deleterious(0) possibly_damaging(0.492) TCGA-FS-A4FD-06 12 14959305 14959305 C A SMCO3 Nonsense_Mutation p.E104* 0.36 TCGA-FS-A4FD-06 12 18716344 18716344 G A PIK3C2G Missense_Mutation p.E1231K 0.50 tolerated(0.13) benign(0.008) TCGA-FS-A4FD-06 12 20874950 20874950 G A SLCO1C1 Missense_Mutation p.G330R 0.41 tolerated(0.48) benign(0.005) TCGA-FS-A4FD-06 12 21196326 21196326 C T SLCO1B7 Silent p.F215F 0.34 TCGA-FS-A4FD-06 12 41831811 41831811 C T PDZRN4 Intron 0.39 TCGA-FS-A4FD-06 12 5154539 5154539 G A KCNA5 Missense_Mutation p.R409H 0.30 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 12 52200486 52200486 C T SCN8A Missense_Mutation p.P1739L 0.40 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 12 54070023 54070023 C T ATP5G2 5'UTR 0.34 TCGA-FS-A4FD-06 12 55759103 55759103 C T OR6C75 Missense_Mutation p.S70L 0.41 tolerated_low_confidence(0.11) benign(0.002) TCGA-FS-A4FD-06 12 56082633 56082633 G T ITGA7 Missense_Mutation p.L989M 0.43 deleterious(0) probably_damaging(0.99) TCGA-FS-A4FD-06 12 6749334 6749334 C T ACRBP Missense_Mutation p.M439I 0.32 deleterious(0.02) benign(0.032) TCGA-FS-A4FD-06 12 7064610 7064610 G A PTPN6 Missense_Mutation p.E237K 0.38 tolerated(0.3) benign(0.135) TCGA-FS-A4FD-06 13 110850868 110850868 C T COL4A1 Missense_Mutation p.G411R 0.46 unknown(0) TCGA-FS-A4FD-06 13 23911927 23911927 G A SACS Missense_Mutation p.P2030S 0.61 probably_damaging(0.998) TCGA-FS-A4FD-06 13 24895991 24895991 C T C1QTNF9 3'UTR 0.32 TCGA-FS-A4FD-06 13 26402291 26402291 G A ATP8A2 Silent p.Q905Q 0.48 TCGA-FS-A4FD-06 13 28919596 28919596 G A FLT1 Nonsense_Mutation p.R781* 0.54 TCGA-FS-A4FD-06 13 28979973 28979973 C T FLT1 Missense_Mutation p.G499R 0.55 tolerated(0.35) benign(0.424) TCGA-FS-A4FD-06 13 29600779 29600779 C T MTUS2 Silent p.I658I 0.55 TCGA-FS-A4FD-06 13 41932627 41932627 T C NAA16 Intron 0.55 TCGA-FS-A4FD-06 13 49076948 49076948 G A RCBTB2 Silent p.I343I 0.43 TCGA-FS-A4FD-06 13 49765344 49765344 G A FNDC3A Splice_Site p.X684_splice 0.57 TCGA-FS-A4FD-06 13 58207257 58207257 C T PCDH17 Missense_Mutation p.P193S 0.42 deleterious(0.05) possibly_damaging(0.876) TCGA-FS-A4FD-06 13 72063191 72063191 G A DACH1 Missense_Mutation p.P556S 0.31 benign(0.32) TCGA-FS-A4FD-06 13 78165574 78165574 G A SCEL Missense_Mutation p.R224K 0.45 tolerated(0.09) benign(0.012) TCGA-FS-A4FD-06 13 79189818 79189818 G A RNF219 Missense_Mutation p.S693F 0.20 deleterious(0) possibly_damaging(0.657) TCGA-FS-A4FD-06 13 80122489 80122489 C T NDFIP2 Silent p.F289F 0.44 TCGA-FS-A4FD-06 13 84454874 84454874 C T SLITRK1 Missense_Mutation p.E257K 0.28 tolerated(1) benign(0.002) TCGA-FS-A4FD-06 13 86370291 86370291 T G SLITRK6 Missense_Mutation p.H118P 0.47 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FD-06 13 88329002 88329002 C T SLITRK5 Silent p.F453F 0.37 TCGA-FS-A4FD-06 14 100615720 100615720 C T DEGS2 Missense_Mutation p.G137D 0.50 tolerated(0.66) probably_damaging(0.998) TCGA-FS-A4FD-06 14 106174432 106174432 A G IGHA1 Silent p.S119S 0.40 TCGA-FS-A4FD-06 14 106406096 106406096 C T IGHV6-1 5'UTR 0.45 TCGA-FS-A4FD-06 14 106494419 106494419 C T IGHV2-5 Missense_Mutation p.E25K 0.39 deleterious(0.01) probably_damaging(0.956) TCGA-FS-A4FD-06 14 107218852 107218852 C T IGHV3-74 Missense_Mutation p.A59T 0.35 tolerated_low_confidence(0.06) benign(0.32) TCGA-FS-A4FD-06 14 20692327 20692327 C T OR11H6 Silent p.I153I 0.44 TCGA-FS-A4FD-06 14 20842691 20842691 G A TEP1 Missense_Mutation p.S2123F 0.56 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 14 21108970 21108970 G A OR6S1 Missense_Mutation p.A294V 0.39 deleterious(0) benign(0.166) TCGA-FS-A4FD-06 14 21798502 21798502 C T RPGRIP1 Missense_Mutation p.S1065F 0.39 tolerated(0.13) benign(0.035) TCGA-FS-A4FD-06 14 22458764 22458764 G A TRAV16 Silent p.V10V 0.74 TCGA-FS-A4FD-06 14 42373443 42373443 C T LRFN5 3'UTR 0.30 TCGA-FS-A4FD-06 14 52194488 52194488 C T FRMD6 Missense_Mutation p.S537F 0.23 tolerated(0.45) probably_damaging(0.935) TCGA-FS-A4FD-06 14 70712784 70712784 C T ADAM21P1 RNA 0.21 TCGA-FS-A4FD-06 14 71199336 71199336 G A MAP3K9 Missense_Mutation p.S931F 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 14 74535579 74535579 C T ALDH6A1 Missense_Mutation p.R279K 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A4FD-06 14 74876061 74876061 C T SYNDIG1L Silent p.R129R 0.38 TCGA-FS-A4FD-06 14 75530213 75530213 A C ACYP1 Missense_Mutation p.F15C 0.32 deleterious(0.04) possibly_damaging(0.843) TCGA-FS-A4FD-06 14 75587221 75587221 G A NEK9 Silent p.I172I 0.32 TCGA-FS-A4FD-06 14 92488016 92488016 G A TRIP11 Missense_Mutation p.H158Y 0.35 tolerated(0.12) benign(0.005) TCGA-FS-A4FD-06 15 22368758 22368758 C T OR4M2 Silent p.F61F 0.34 TCGA-FS-A4FD-06 15 35083365 35083365 G A ACTC1 Missense_Mutation p.R314C 0.67 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4FD-06 15 45394164 45394164 T C DUOX2 Missense_Mutation p.N893S 0.60 tolerated(0.27) benign(0.043) TCGA-FS-A4FD-06 15 45396414 45396414 G A DUOX2 Silent p.F828F 0.64 TCGA-FS-A4FD-06 15 50168605 50168605 G A ATP8B4 Missense_Mutation p.S966L 0.28 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FD-06 15 50264974 50264974 G A ATP8B4 Missense_Mutation p.R350C 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 15 52553077 52553077 C T MYO5C Missense_Mutation p.G432D 0.36 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FD-06 15 63047810 63047810 C T TLN2 Missense_Mutation p.A1519V 0.22 deleterious(0.01) benign(0.002) TCGA-FS-A4FD-06 15 65622636 65622636 C T IGDCC3 Missense_Mutation p.R618K 0.15 tolerated(0.43) benign(0.003) TCGA-FS-A4FD-06 15 68642965 68642965 G A ITGA11 Silent p.F350F 0.18 TCGA-FS-A4FD-06 15 74241841 74241841 C T LOXL1 Silent p.F548F 0.28 TCGA-FS-A4FD-06 15 74472546 74472546 C T STRA6 Missense_Mutation p.G666R 0.37 tolerated(0.57) benign(0.013) TCGA-FS-A4FD-06 15 78882154 78882154 G A CHRNA5 Missense_Mutation p.G141R 0.39 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FD-06 15 81592112 81592112 C T IL16 Silent p.S815S 0.14 TCGA-FS-A4FD-06 15 83332700 83332700 C T AP3B2 Silent p.R744R 0.30 TCGA-FS-A4FD-06 15 83335674 83335674 C T AP3B2 Silent p.L559L 0.12 TCGA-FS-A4FD-06 15 89070914 89070914 A C DET1 Missense_Mutation p.L407R 0.31 tolerated(0.34) benign(0.446) TCGA-FS-A4FD-06 15 95013582 95013582 C T MCTP2 Missense_Mutation p.P794L 0.20 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 15 95013583 95013583 C T MCTP2 Silent p.P794P 0.20 TCGA-FS-A4FD-06 16 1261531 1261531 C T CACNA1H Silent p.I1467I 0.29 TCGA-FS-A4FD-06 16 2024990 2024990 G C TBL3 Missense_Mutation p.A176P 0.23 tolerated(0.18) benign(0.384) TCGA-FS-A4FD-06 16 20966172 20966172 G T DNAH3 Missense_Mutation p.H3678Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 16 21053352 21053352 G A DNAH3 Silent p.L1545L 0.28 TCGA-FS-A4FD-06 16 21698751 21698751 C T OTOA Silent p.I139I 0.31 TCGA-FS-A4FD-06 16 21995641 21995641 C T PDZD9 Missense_Mutation p.D188N 0.25 tolerated(0.06) probably_damaging(0.988) TCGA-FS-A4FD-06 16 24372804 24372804 G A CACNG3 Missense_Mutation p.E190K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FD-06 16 31418959 31418959 G A ITGAD Silent p.E276E 0.26 TCGA-FS-A4FD-06 16 31487389 31487389 T C TGFB1I1 Silent p.C257C 0.32 TCGA-FS-A4FD-06 16 56936328 56936328 G A SLC12A3 Missense_Mutation p.D931N 0.43 deleterious(0.02) possibly_damaging(0.9) TCGA-FS-A4FD-06 16 624743 624743 C T PIGQ Silent p.V223V 0.22 TCGA-FS-A4FD-06 16 69778902 69778902 G A NOB1 Silent p.S281S 0.41 TCGA-FS-A4FD-06 16 71483540 71483540 G A ZNF23 Nonsense_Mutation p.Q130* 0.47 TCGA-FS-A4FD-06 16 77465388 77465388 C T ADAMTS18 Missense_Mutation p.R100Q 0.36 tolerated(0.08) benign(0.056) TCGA-FS-A4FD-06 16 7760779 7760779 G A RBFOX1 3'UTR 0.33 TCGA-FS-A4FD-06 16 81929430 81929430 C A PLCG2 Missense_Mutation p.P364H 0.49 deleterious(0) probably_damaging(0.99) TCGA-FS-A4FD-06 16 87445429 87445429 G A ZCCHC14 Silent p.P829P 0.50 TCGA-FS-A4FD-06 17 10299931 10299931 A C MYH8 Missense_Mutation p.N1489K 0.42 deleterious(0.04) probably_damaging(1) TCGA-FS-A4FD-06 17 16004691 16004691 G A NCOR1 Missense_Mutation p.P855S 0.37 benign(0.031) TCGA-FS-A4FD-06 17 17699760 17699760 C T RAI1 Silent p.G1166G 0.47 TCGA-FS-A4FD-06 17 27240003 27240003 G A PHF12 Missense_Mutation p.S529F 0.40 tolerated(0.69) benign(0.36) TCGA-FS-A4FD-06 17 28386575 28386575 G A EFCAB5 Missense_Mutation p.A865T 0.49 tolerated(0.22) benign(0.046) TCGA-FS-A4FD-06 17 3493667 3493667 G A SHPK Silent p.I208I 0.41 TCGA-FS-A4FD-06 17 39118815 39118815 C T KRT39 Missense_Mutation p.E237K 0.42 deleterious(0) probably_damaging(0.961) TCGA-FS-A4FD-06 17 39334462 39334462 T A KRTAP4-2 5'Flank 0.47 TCGA-FS-A4FD-06 17 39658952 39658952 G A KRT13 Missense_Mutation p.S337F 0.34 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FD-06 17 39723941 39723941 C T KRT9 Missense_Mutation p.G486R 0.26 tolerated_low_confidence(0.21) unknown(0) TCGA-FS-A4FD-06 17 42828442 42828442 C T DBF4B Missense_Mutation p.R557W 0.59 deleterious_low_confidence(0) benign(0.025) TCGA-FS-A4FD-06 17 45360729 45360729 C T ITGB3 Silent p.L59L 0.63 TCGA-FS-A4FD-06 17 4646609 4646609 G A ZMYND15 Missense_Mutation p.E386K 0.37 tolerated(0.17) possibly_damaging(0.886) TCGA-FS-A4FD-06 17 46919095 46919095 C T CALCOCO2 Missense_Mutation p.P9L 0.59 deleterious(0) probably_damaging(0.951) TCGA-FS-A4FD-06 17 47656351 47656351 C T NXPH3 Missense_Mutation p.P150S 0.25 deleterious(0) probably_damaging(0.996) TCGA-FS-A4FD-06 17 47656352 47656352 C T NXPH3 Missense_Mutation p.P150L 0.26 deleterious(0) probably_damaging(0.997) TCGA-FS-A4FD-06 17 48435787 48435787 C T XYLT2 Missense_Mutation p.P721S 0.26 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 17 48435788 48435788 C T XYLT2 Missense_Mutation p.P721L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 17 50008395 50008395 G A CA10 Silent p.F78F 0.26 TCGA-FS-A4FD-06 17 62793412 62793412 G A PLEKHM1P RNA 0.19 TCGA-FS-A4FD-06 17 65909184 65909184 A G BPTF Silent p.L1728L 0.14 TCGA-FS-A4FD-06 17 67149467 67149467 G A ABCA10 Missense_Mutation p.P1372L 0.31 tolerated(0.1) possibly_damaging(0.589) TCGA-FS-A4FD-06 17 7724582 7724582 C T DNAH2 Silent p.F3679F 0.31 TCGA-FS-A4FD-06 17 79428477 79428477 C T RP11-1055B8.7 Missense_Mutation p.P2263L 0.71 benign(0.204) TCGA-FS-A4FD-06 17 8349084 8349084 G A NDEL1 Missense_Mutation p.E48K 0.51 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FD-06 17 9632217 9632217 G A USP43 Silent p.G1094G 0.40 TCGA-FS-A4FD-06 18 14752647 14752647 C T ANKRD30B Missense_Mutation p.L102F 0.44 tolerated(0.12) possibly_damaging(0.759) TCGA-FS-A4FD-06 18 19997320 19997320 G A CTAGE1 Missense_Mutation p.S152F 0.34 tolerated(0.11) benign(0.222) TCGA-FS-A4FD-06 18 28989531 28989531 G A DSG4 Missense_Mutation p.E684K 0.31 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FD-06 18 29044325 29044325 C A DSG3 Missense_Mutation p.N417K 0.22 deleterious(0.01) benign(0.008) TCGA-FS-A4FD-06 18 31318776 31318776 C T ASXL3 Missense_Mutation p.H470Y 0.53 benign(0.432) TCGA-FS-A4FD-06 18 31323343 31323343 G A ASXL3 Silent p.E1177E 0.37 TCGA-FS-A4FD-06 18 32833734 32833734 C T ZSCAN30 Missense_Mutation p.E389K 0.52 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FD-06 18 40850524 40850524 A G SYT4 Missense_Mutation p.F354L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 18 43479518 43479518 G A EPG5 Missense_Mutation p.R1554W 0.46 tolerated(0.2) probably_damaging(0.988) TCGA-FS-A4FD-06 18 61308142 61308142 C T SERPINB4 Silent p.K145K 0.22 TCGA-FS-A4FD-06 18 61570174 61570174 A C SERPINB2 Missense_Mutation p.T295P 0.29 deleterious(0.01) probably_damaging(0.95) TCGA-FS-A4FD-06 18 63511135 63511135 C T CDH7 Missense_Mutation p.P357S 0.51 tolerated(0.11) probably_damaging(0.979) TCGA-FS-A4FD-06 18 65178404 65178404 G A DSEL Missense_Mutation p.P1158S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FD-06 18 6859892 6859892 C T ARHGAP28 Missense_Mutation p.S82F 0.41 deleterious(0.01) possibly_damaging(0.553) TCGA-FS-A4FD-06 18 72998520 72998520 G A TSHZ1 Silent p.A341A 0.40 TCGA-FS-A4FD-06 19 11097649 11097649 C T SMARCA4 Missense_Mutation p.P277S 0.31 benign(0.027) TCGA-FS-A4FD-06 19 11657690 11657690 G A CNN1 Missense_Mutation p.G99E 0.42 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FD-06 19 15636250 15636250 C T CYP4F22 Silent p.L35L 0.38 TCGA-FS-A4FD-06 19 15791071 15791071 G A CYP4F12 Missense_Mutation p.D121N 0.40 tolerated(0.06) benign(0.182) TCGA-FS-A4FD-06 19 17091474 17091474 G A CPAMD8 Missense_Mutation p.S520F 0.40 tolerated(0.09) benign(0.008) TCGA-FS-A4FD-06 19 17865973 17865973 G A FCHO1 5'UTR 0.35 TCGA-FS-A4FD-06 19 22783080 22783080 C T AC011467.1 5'Flank 0.50 TCGA-FS-A4FD-06 19 3532524 3532525 - G FZR1 Frame_Shift_Ins p.G376Rfs*4 0.29 TCGA-FS-A4FD-06 19 35832286 35832286 T A CD22 Silent p.L516L 0.44 TCGA-FS-A4FD-06 19 38877842 38877842 C T GGN Silent p.S20S 0.67 TCGA-FS-A4FD-06 19 40698476 40698476 G A MAP3K10 Missense_Mutation p.G180S 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 19 40698477 40698477 G A MAP3K10 Missense_Mutation p.G180D 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 19 42730352 42730352 G A ZNF526 Silent p.R599R 0.47 TCGA-FS-A4FD-06 19 42848596 42848596 C T MEGF8 Missense_Mutation p.P598S 0.43 tolerated(0.56) benign(0.068) TCGA-FS-A4FD-06 19 43087474 43087474 C T CEACAM8 Missense_Mutation p.G325E 0.21 tolerated(1) benign(0.055) TCGA-FS-A4FD-06 19 43674267 43674267 G A PSG5 Missense_Mutation p.P330S 0.36 tolerated(0.3) benign(0.006) TCGA-FS-A4FD-06 19 44223002 44223002 C T IRGC Missense_Mutation p.P98S 0.45 tolerated(0.22) benign(0.009) TCGA-FS-A4FD-06 19 4538053 4538053 G A LRG1 Nonsense_Mutation p.Q315* 0.53 TCGA-FS-A4FD-06 19 45381726 45381726 C T PVRL2 Intron 0.38 TCGA-FS-A4FD-06 19 45381727 45381727 C T PVRL2 Intron 0.38 TCGA-FS-A4FD-06 19 45767988 45767988 G A MARK4 Silent p.V134V 0.36 TCGA-FS-A4FD-06 19 49261274 49261274 C T FGF21 Missense_Mutation p.P143S 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-FS-A4FD-06 19 50099914 50099914 C T PRR12 Silent p.T774T 0.36 TCGA-FS-A4FD-06 19 51517974 51517974 G A KLK10 3'UTR 0.29 TCGA-FS-A4FD-06 19 51875258 51875258 G A NKG7 Silent p.I125I 0.50 TCGA-FS-A4FD-06 19 51920058 51920058 T C SIGLEC10 Missense_Mutation p.T190A 0.23 tolerated(0.5) benign(0.058) TCGA-FS-A4FD-06 19 52133153 52133153 G A SIGLEC5 Silent p.F118F 0.21 TCGA-FS-A4FD-06 19 52196011 52196011 C T SPACA6P-AS RNA 0.45 TCGA-FS-A4FD-06 19 52327383 52327383 C T FPR3 Silent p.L128L 0.23 TCGA-FS-A4FD-06 19 54175244 54175244 G A MIR1323 RNA 0.45 TCGA-FS-A4FD-06 19 54255649 54255649 A C MIR527 5'Flank 0.38 TCGA-FS-A4FD-06 19 55112225 55112225 C T LILRA1 Silent p.V471V 0.35 TCGA-FS-A4FD-06 19 55285036 55285036 C T KIR2DL1 Missense_Mutation p.P108S 0.71 tolerated(0.11) probably_damaging(0.991) TCGA-FS-A4FD-06 19 57326134 57326134 G A PEG3 Nonsense_Mutation p.R1226* 0.51 TCGA-FS-A4FD-06 19 618551 618551 G T POLRMT Missense_Mutation p.P1120Q 0.21 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 19 618552 618552 G A POLRMT Missense_Mutation p.P1120S 0.22 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FD-06 19 6854071 6854071 G A VAV1 Missense_Mutation p.G816R 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 19 8808815 8808815 C T ACTL9 Silent p.L79L 0.57 TCGA-FS-A4FD-06 19 9056625 9056625 G A MUC16 Missense_Mutation p.S10274F 0.44 possibly_damaging(0.683) TCGA-FS-A4FD-06 19 9060785 9060785 G A MUC16 Silent p.F8887F 0.43 TCGA-FS-A4FD-06 19 9069045 9069045 G A MUC16 Missense_Mutation p.S6134L 0.36 unknown(0) TCGA-FS-A4FD-06 19 9524382 9524382 G A ZNF266 Missense_Mutation p.P407S 0.34 deleterious(0) probably_damaging(0.974) TCGA-FS-A4FD-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.48 tolerated(0.06) benign(0.006) TCGA-FS-A4FD-06 1 11574556 11574556 C T PTCHD2 Silent p.L476L 0.35 TCGA-FS-A4FD-06 1 11580881 11580881 G A PTCHD2 Missense_Mutation p.G780S 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-FS-A4FD-06 1 12721840 12721840 A G AADACL4 Missense_Mutation p.T142A 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-FS-A4FD-06 1 13036411 13036411 C T PRAMEF22 Silent p.F161F 0.23 TCGA-FS-A4FD-06 1 14057584 14057584 C T PRDM2 Silent p.F33F 0.37 TCGA-FS-A4FD-06 1 145273408 145273408 G A NOTCH2NL Missense_Mutation p.D88N 0.06 tolerated(0.1) probably_damaging(0.957) TCGA-FS-A4FD-06 1 147231310 147231310 C T GJA5 Missense_Mutation p.E13K 0.57 tolerated(0.09) benign(0.085) TCGA-FS-A4FD-06 1 147380982 147380982 C T GJA8 Silent p.F300F 0.68 TCGA-FS-A4FD-06 1 150960657 150960657 G A ANXA9 Missense_Mutation p.G263D 0.16 tolerated(0.16) benign(0.186) TCGA-FS-A4FD-06 1 152058866 152058866 C T TCHHL1 Missense_Mutation p.G431E 0.24 tolerated(1) benign(0.005) TCGA-FS-A4FD-06 1 152975751 152975751 C T SPRR3 Silent p.V85V 0.34 TCGA-FS-A4FD-06 1 153043226 153043226 C T SPRR2B Silent p.P30P 0.40 TCGA-FS-A4FD-06 1 153752344 153752344 C T SLC27A3 Missense_Mutation p.R687W 0.62 deleterious(0.01) probably_damaging(0.983) TCGA-FS-A4FD-06 1 155239494 155239494 G A CLK2 Missense_Mutation p.R62C 0.27 tolerated(0.05) unknown(0) TCGA-FS-A4FD-06 1 158449856 158449856 C T OR10R2 Silent p.V63V 0.50 TCGA-FS-A4FD-06 1 158596732 158596732 G T SPTA1 Silent p.T1910T 0.28 TCGA-FS-A4FD-06 1 158687447 158687447 G A OR6K3 Silent p.F153F 0.47 TCGA-FS-A4FD-06 1 158724851 158724851 C T OR6K6 Silent p.A82A 0.26 TCGA-FS-A4FD-06 1 159272175 159272175 C T FCER1A Silent p.S7S 0.24 TCGA-FS-A4FD-06 1 160769763 160769763 C T LY9 Silent p.S115S 0.61 TCGA-FS-A4FD-06 1 161059076 161059076 G A PVRL4 Missense_Mutation p.S4F 0.21 deleterious_low_confidence(0.01) benign(0.1) TCGA-FS-A4FD-06 1 167666602 167666602 G A RCSD1 Silent p.E247E 0.18 TCGA-FS-A4FD-06 1 167780011 167780011 G A ADCY10 Missense_Mutation p.S1541F 0.52 deleterious(0.04) possibly_damaging(0.775) TCGA-FS-A4FD-06 1 167791329 167791329 C T ADCY10 Missense_Mutation p.E1407K 0.50 deleterious(0.03) benign(0.127) TCGA-FS-A4FD-06 1 17395457 17395457 C T PADI2 3'UTR 0.29 TCGA-FS-A4FD-06 1 17409124 17409124 G A PADI2 Silent p.I358I 0.49 TCGA-FS-A4FD-06 1 179363152 179363152 C T AXDND1 Silent p.F326F 0.33 TCGA-FS-A4FD-06 1 183895276 183895276 C T RGL1 Silent p.A754A 0.27 TCGA-FS-A4FD-06 1 186643772 186643772 C T PTGS2 Missense_Mutation p.E510K 0.51 deleterious(0.01) possibly_damaging(0.745) TCGA-FS-A4FD-06 1 186643773 186643773 T G PTGS2 Silent p.V509V 0.51 TCGA-FS-A4FD-06 1 19029785 19029785 C T PAX7 Missense_Mutation p.P384S 0.48 tolerated_low_confidence(0.19) benign(0.158) TCGA-FS-A4FD-06 1 197024887 197024887 G A F13B Missense_Mutation p.R438C 0.23 tolerated(0.1) possibly_damaging(0.849) TCGA-FS-A4FD-06 1 201970858 201970858 C T RNPEP Silent p.F463F 0.23 TCGA-FS-A4FD-06 1 202574757 202574757 C T SYT2 Silent p.K48K 0.14 TCGA-FS-A4FD-06 1 20517807 20517807 T A UBXN10 Missense_Mutation p.F251L 0.44 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 1 206225313 206225313 C T AVPR1B Silent p.I291I 0.25 TCGA-FS-A4FD-06 1 206328781 206328781 G A CTSE Missense_Mutation p.G283E 0.22 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 1 207753659 207753659 G A CR1 Missense_Mutation p.E1671K 0.25 deleterious(0.01) possibly_damaging(0.892) TCGA-FS-A4FD-06 1 209796416 209796416 G A LAMB3 Missense_Mutation p.P823S 0.60 tolerated(0.07) benign(0.142) TCGA-FS-A4FD-06 1 209935905 209935905 C T TRAF3IP3 Missense_Mutation p.P131S 0.60 tolerated(0.41) benign(0.033) TCGA-FS-A4FD-06 1 210273361 210273361 T G SYT14 Missense_Mutation p.M285R 0.24 tolerated(0.69) benign(0.015) TCGA-FS-A4FD-06 1 216019187 216019187 G A USH2A Missense_Mutation p.H3012Y 0.27 benign(0.001) TCGA-FS-A4FD-06 1 240072138 240072138 C A CHRM3 Missense_Mutation p.L463M 0.58 tolerated(0.46) benign(0.316) TCGA-FS-A4FD-06 1 240371808 240371808 C T FMN2 Silent p.I1232I 0.58 TCGA-FS-A4FD-06 1 247769807 247769807 G A OR2G3 Missense_Mutation p.G307E 0.26 tolerated(0.36) benign(0.014) TCGA-FS-A4FD-06 1 248308943 248308943 C T OR2M5 Missense_Mutation p.S165F 0.24 deleterious(0.03) benign(0.075) TCGA-FS-A4FD-06 1 248616475 248616475 C T OR2T2 Missense_Mutation p.A126V 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-FS-A4FD-06 1 27480565 27480565 C A SLC9A1 Missense_Mutation p.K87N 0.34 deleterious(0.04) possibly_damaging(0.893) TCGA-FS-A4FD-06 1 33236500 33236500 C A KIAA1522 Missense_Mutation p.P574T 0.54 tolerated(0.4) unknown(0) TCGA-FS-A4FD-06 1 34180292 34180292 A G CSMD2 Silent p.L1061L 0.39 TCGA-FS-A4FD-06 1 44437836 44437836 C T DPH2 Missense_Mutation p.P392L 0.33 tolerated(0.28) benign(0.018) TCGA-FS-A4FD-06 1 62455863 62455863 G A INADL Missense_Mutation p.D1232N 0.35 deleterious(0.03) probably_damaging(0.932) TCGA-FS-A4FD-06 1 6537604 6537604 C T PLEKHG5 Missense_Mutation p.D89N 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-FS-A4FD-06 1 75009635 75009635 G A TNNI3K Missense_Mutation p.R927Q 0.21 tolerated_low_confidence(0.57) benign(0) TCGA-FS-A4FD-06 1 78162965 78162965 A C USP33 3'UTR 0.53 TCGA-FS-A4FD-06 1 90475708 90475708 C T ZNF326 Missense_Mutation p.S226F 0.30 tolerated(0.07) benign(0.271) TCGA-FS-A4FD-06 20 10030498 10030498 G A ANKEF1 Silent p.G427G 0.56 TCGA-FS-A4FD-06 20 139680 139680 C T DEFB127 3'UTR 0.14 TCGA-FS-A4FD-06 20 24646003 24646003 G A SYNDIG1 Missense_Mutation p.G214R 0.23 deleterious(0) probably_damaging(0.982) TCGA-FS-A4FD-06 20 2774947 2774947 G A CPXM1 Silent p.F698F 0.26 TCGA-FS-A4FD-06 20 37194011 37194011 C T RALGAPB Missense_Mutation p.S1236F 0.26 tolerated(0.13) benign(0.043) TCGA-FS-A4FD-06 20 47317392 47317392 G A PREX1 Silent p.L272L 0.72 TCGA-FS-A4FD-06 20 51872839 51872839 C T TSHZ2 Missense_Mutation p.H948Y 0.84 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FD-06 20 5282949 5282949 G A PROKR2 Missense_Mutation p.R298C 0.25 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 20 54573540 54573540 G A CBLN4 3'UTR 0.26 TCGA-FS-A4FD-06 20 60908184 60908184 G A LAMA5 Missense_Mutation p.P1082S 0.12 possibly_damaging(0.78) TCGA-FS-A4FD-06 20 744446 744446 T A SLC52A3 Missense_Mutation p.N257Y 0.54 tolerated(0.1) benign(0.007) TCGA-FS-A4FD-06 20 9402034 9402034 G A PLCB4 Missense_Mutation p.E737K 0.27 tolerated(0.16) probably_damaging(0.999) TCGA-FS-A4FD-06 20 9525110 9525110 T G PAK7 Missense_Mutation p.Q592P 0.28 deleterious(0) probably_damaging(0.995) TCGA-FS-A4FD-06 21 11038783 11038783 C T BAGE2 RNA 0.06 TCGA-FS-A4FD-06 21 30254508 30254508 G A N6AMT1 Missense_Mutation p.H96Y 0.25 benign(0.027) TCGA-FS-A4FD-06 21 31986066 31986066 G A KRTAP6-1 Missense_Mutation p.S53F 0.32 unknown(0) TCGA-FS-A4FD-06 21 32253710 32253710 G A KRTAP11-1 Missense_Mutation p.S45F 0.33 deleterious(0) probably_damaging(0.983) TCGA-FS-A4FD-06 21 43241437 43241437 G C PRDM15 Missense_Mutation p.D1048E 0.35 deleterious(0.01) possibly_damaging(0.877) TCGA-FS-A4FD-06 21 46101837 46101837 G A KRTAP12-1 Missense_Mutation p.P68S 0.39 tolerated(0.3) possibly_damaging(0.876) TCGA-FS-A4FD-06 21 46900640 46900640 C T COL18A1 Silent p.P673P 0.05 TCGA-FS-A4FD-06 22 17072956 17072956 G A CCT8L2 Missense_Mutation p.S162F 0.43 tolerated(0.34) benign(0.007) TCGA-FS-A4FD-06 22 22277304 22277304 G A PPM1F 3'UTR 0.18 TCGA-FS-A4FD-06 22 22890520 22890520 G A PRAME Missense_Mutation p.P500L 0.46 deleterious(0.04) probably_damaging(0.989) TCGA-FS-A4FD-06 22 24621539 24621539 C T GGT5 Silent p.R437R 0.20 TCGA-FS-A4FD-06 22 30639670 30639670 C T LIF Silent p.Q193Q 0.26 TCGA-FS-A4FD-06 22 37528434 37528434 C T IL2RB Missense_Mutation p.G298E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 22 42166927 42166927 T C MEI1 Silent p.L836L 0.34 TCGA-FS-A4FD-06 22 43926743 43926743 G A EFCAB6 Silent p.S1445S 0.40 TCGA-FS-A4FD-06 22 45813576 45813576 C T RIBC2 Silent p.F97F 0.65 TCGA-FS-A4FD-06 2 103061668 103061668 G A IL18RAP Missense_Mutation p.D314N 0.43 tolerated(0.56) benign(0.013) TCGA-FS-A4FD-06 2 103067476 103067476 G A IL18RAP Missense_Mutation p.G460E 0.36 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 2 108999931 108999931 C T SULT1C4 Missense_Mutation p.R194C 0.22 tolerated(0.07) benign(0.065) TCGA-FS-A4FD-06 2 113593146 113593146 C T IL1B Missense_Mutation p.M32I 0.57 tolerated(0.3) benign(0.05) TCGA-FS-A4FD-06 2 119699888 119699888 G A MARCO Silent p.K4K 0.39 TCGA-FS-A4FD-06 2 119750014 119750014 C T MARCO Missense_Mutation p.S405F 0.43 deleterious(0.01) unknown(0) TCGA-FS-A4FD-06 2 128066208 128066208 G A MAP3K2 Silent p.S529S 0.41 TCGA-FS-A4FD-06 2 131520746 131520746 C T AMER3 Silent p.I367I 0.42 TCGA-FS-A4FD-06 2 131976345 131976345 G A POTEE Missense_Mutation p.D124N 0.28 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-FS-A4FD-06 2 132289353 132289353 C T CCDC74A Missense_Mutation p.P221S 0.31 tolerated(0.32) benign(0.227) TCGA-FS-A4FD-06 2 132558534 132558534 C T C2orf27B 5'UTR 0.31 TCGA-FS-A4FD-06 2 135848614 135848614 C T RAB3GAP1 Missense_Mutation p.S66F 0.36 tolerated(0.64) benign(0.001) TCGA-FS-A4FD-06 2 139428891 139428891 C T NXPH2 Silent p.G132G 0.37 TCGA-FS-A4FD-06 2 154335006 154335006 C T RPRM Missense_Mutation p.R25Q 0.32 tolerated_low_confidence(0.66) benign(0.037) TCGA-FS-A4FD-06 2 155102424 155102424 G A GALNT13 Silent p.L262L 0.47 TCGA-FS-A4FD-06 2 158272256 158272256 C T CYTIP Missense_Mutation p.R338Q 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-FS-A4FD-06 2 161056649 161056649 C T ITGB6 5'UTR 0.25 TCGA-FS-A4FD-06 2 163291742 163291742 C T KCNH7 Silent p.E640E 0.53 TCGA-FS-A4FD-06 2 163291743 163291743 T C KCNH7 Missense_Mutation p.E640G 0.53 deleterious(0) probably_damaging(0.956) TCGA-FS-A4FD-06 2 1652918 1652918 G A PXDN Silent p.F878F 0.37 TCGA-FS-A4FD-06 2 166246121 166246121 C G SCN2A Missense_Mutation p.D1935E 0.42 tolerated(0.67) benign(0.005) TCGA-FS-A4FD-06 2 166892867 166892867 C T SCN1A Silent p.R1040R 0.39 TCGA-FS-A4FD-06 2 167138232 167138232 C T SCN9A Silent p.Q676Q 0.35 TCGA-FS-A4FD-06 2 168103347 168103347 C A XIRP2 Missense_Mutation p.N1815K 0.37 benign(0.444) TCGA-FS-A4FD-06 2 168104846 168104846 C T XIRP2 Missense_Mutation p.P2315L 0.36 possibly_damaging(0.449) TCGA-FS-A4FD-06 2 168106016 168106016 C T XIRP2 Missense_Mutation p.S2705F 0.37 benign(0.045) TCGA-FS-A4FD-06 2 169681219 169681219 G A NOSTRIN Silent p.T63T 0.62 TCGA-FS-A4FD-06 2 179596871 179596871 C T TTN Missense_Mutation p.E5609K 0.39 TCGA-FS-A4FD-06 2 179642031 179642031 C T TTN Silent p.Q1553Q 0.38 TCGA-FS-A4FD-06 2 186670594 186670594 G A FSIP2 Missense_Mutation p.D5610N 0.37 benign(0.011) TCGA-FS-A4FD-06 2 188361702 188361702 G A TFPI Silent p.F75F 0.34 TCGA-FS-A4FD-06 2 189899766 189899766 C T COL5A2 Missense_Mutation p.G1410E 0.35 unknown(0) TCGA-FS-A4FD-06 2 189948717 189948717 C T COL5A2 Missense_Mutation p.G282E 0.44 probably_damaging(0.939) TCGA-FS-A4FD-06 2 190541511 190541511 G C ANKAR Missense_Mutation p.E99Q 0.35 deleterious(0.01) possibly_damaging(0.634) TCGA-FS-A4FD-06 2 191354495 191354495 G A MFSD6 Silent p.G598G 0.44 TCGA-FS-A4FD-06 2 207172439 207172439 G A ZDBF2 Missense_Mutation p.E1063K 0.57 tolerated(0.16) possibly_damaging(0.678) TCGA-FS-A4FD-06 2 21231489 21231489 C T APOB Missense_Mutation p.E2751K 0.36 benign(0.004) TCGA-FS-A4FD-06 2 21232371 21232371 G A APOB Silent p.L2457L 0.34 TCGA-FS-A4FD-06 2 21234799 21234799 A C APOB Missense_Mutation p.I1647M 0.39 probably_damaging(0.994) TCGA-FS-A4FD-06 2 215845251 215845251 C T ABCA12 Missense_Mutation p.E1566K 0.24 deleterious(0) possibly_damaging(0.642) TCGA-FS-A4FD-06 2 218837 218837 G A SH3YL1 Missense_Mutation p.P335S 0.41 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 2 231176281 231176281 A C SP140 Missense_Mutation p.I826L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 2 231256835 231256835 G A SP140L Missense_Mutation p.G333E 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-FS-A4FD-06 2 237029028 237029028 C T AGAP1 Silent p.G769G 0.46 TCGA-FS-A4FD-06 2 239140992 239140992 G A AC016757.3 5'Flank 0.25 TCGA-FS-A4FD-06 2 239140993 239140993 G A AC016757.3 5'Flank 0.26 TCGA-FS-A4FD-06 2 239155103 239155103 A T PER2 Silent p.I1227I 0.36 TCGA-FS-A4FD-06 2 29294300 29294300 T C C2orf71 Missense_Mutation p.Q943R 0.41 tolerated(0.39) benign(0.004) TCGA-FS-A4FD-06 2 30953616 30953616 C T CAPN13 3'UTR 0.38 TCGA-FS-A4FD-06 2 31589778 31589778 C T XDH Silent p.E760E 0.36 TCGA-FS-A4FD-06 2 49190018 49190018 C T FSHR Missense_Mutation p.E648K 0.31 tolerated(0.9) benign(0.002) TCGA-FS-A4FD-06 2 84804416 84804416 C T DNAH6 Missense_Mutation p.H654Y 0.24 tolerated(0.5) benign(0.37) TCGA-FS-A4FD-06 2 8938348 8938348 G T KIDINS220 Missense_Mutation p.T328N 0.24 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FD-06 2 97531468 97531468 G A SEMA4C Missense_Mutation p.P119S 0.32 tolerated(0.96) benign(0.093) TCGA-FS-A4FD-06 2 99013458 99013458 G A CNGA3 Missense_Mutation p.D609N 0.42 deleterious(0) possibly_damaging(0.829) TCGA-FS-A4FD-06 3 108836900 108836900 C T MORC1 Missense_Mutation p.D3N 0.56 tolerated(0.1) benign(0.042) TCGA-FS-A4FD-06 3 119469801 119469801 A G MAATS1 Missense_Mutation p.K721E 0.67 deleterious(0) probably_damaging(0.976) TCGA-FS-A4FD-06 3 124413298 124413298 C T AC080008.1 3'Flank 0.77 TCGA-FS-A4FD-06 3 130162387 130162387 G A COL6A5 Silent p.E2185E 0.52 TCGA-FS-A4FD-06 3 140695246 140695246 C T SLC25A36 Missense_Mutation p.A296V 0.68 deleterious(0.05) possibly_damaging(0.513) TCGA-FS-A4FD-06 3 15457401 15457401 G A METTL6 Silent p.L137L 0.47 TCGA-FS-A4FD-06 3 154859807 154859807 G A MME Missense_Mutation p.E329K 0.76 tolerated(0.92) benign(0.002) TCGA-FS-A4FD-06 3 15631096 15631096 G A HACL1 Missense_Mutation p.S111F 0.31 deleterious(0) probably_damaging(0.934) TCGA-FS-A4FD-06 3 17053544 17053544 C T PLCL2 Silent p.S776S 0.30 TCGA-FS-A4FD-06 3 17255700 17255700 G A TBC1D5 Missense_Mutation p.S606F 0.57 deleterious(0.01) possibly_damaging(0.635) TCGA-FS-A4FD-06 3 184073219 184073219 G A CLCN2 Silent p.A423A 0.58 TCGA-FS-A4FD-06 3 191888430 191888430 C T FGF12 Missense_Mutation p.E144K 0.75 deleterious(0) possibly_damaging(0.831) TCGA-FS-A4FD-06 3 2967441 2967441 G A CNTN4 Missense_Mutation p.D446N 0.39 tolerated(0.07) benign(0.021) TCGA-FS-A4FD-06 3 3137081 3137081 G A IL5RA Missense_Mutation p.R253C 0.26 tolerated(0.09) benign(0.002) TCGA-FS-A4FD-06 3 36873142 36873142 C T TRANK1 Missense_Mutation p.M2600I 0.21 tolerated(0.21) benign(0.011) TCGA-FS-A4FD-06 3 38764993 38764993 G A SCN10A Missense_Mutation p.P1094S 0.48 tolerated(0.07) possibly_damaging(0.861) TCGA-FS-A4FD-06 3 38892219 38892219 G A SCN11A Silent p.F1360F 0.27 TCGA-FS-A4FD-06 3 48623015 48623015 C T COL7A1 Missense_Mutation p.G1290E 0.40 unknown(0) TCGA-FS-A4FD-06 3 49568307 49568307 C T DAG1 Silent p.P121P 0.48 TCGA-FS-A4FD-06 3 49689773 49689773 C T BSN Silent p.L928L 0.33 TCGA-FS-A4FD-06 3 51968672 51968672 G A RRP9 Silent p.L385L 0.52 TCGA-FS-A4FD-06 3 52442559 52442559 G A BAP1 Silent p.V62V 0.36 TCGA-FS-A4FD-06 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.33 deleterious(0) possibly_damaging(0.841) TCGA-FS-A4FD-06 3 9799438 9799438 C T CAMK1 Silent p.G335G 0.33 TCGA-FS-A4FD-06 4 10086141 10086141 G A WDR1 Missense_Mutation p.S322L 0.40 tolerated(0.13) probably_damaging(0.969) TCGA-FS-A4FD-06 4 120528372 120528372 G A PDE5A Missense_Mutation p.S78F 0.32 deleterious(0.02) benign(0.001) TCGA-FS-A4FD-06 4 121957595 121957595 C T NDNF Missense_Mutation p.E511K 0.43 deleterious(0) benign(0.376) TCGA-FS-A4FD-06 4 123377512 123377512 C T IL2 Silent p.K28K 0.50 TCGA-FS-A4FD-06 4 126370910 126370910 C T FAT4 Silent p.S2913S 0.36 TCGA-FS-A4FD-06 4 162307300 162307300 G A FSTL5 Missense_Mutation p.L715F 0.38 tolerated(0.6) benign(0.046) TCGA-FS-A4FD-06 4 38798354 38798354 T C TLR1 Missense_Mutation p.N700S 0.42 tolerated(0.1) benign(0.182) TCGA-FS-A4FD-06 4 39839615 39839615 G A PDS5A Missense_Mutation p.P1291S 0.26 tolerated_low_confidence(0.58) benign(0.008) TCGA-FS-A4FD-06 4 40351271 40351271 C T CHRNA9 Silent p.I246I 0.34 TCGA-FS-A4FD-06 4 41691629 41691629 T A LIMCH1 Missense_Mutation p.Y1034N 0.35 deleterious(0) possibly_damaging(0.673) TCGA-FS-A4FD-06 4 42122270 42122270 C T BEND4 Silent p.T396T 0.30 TCGA-FS-A4FD-06 4 42554606 42554606 C T ATP8A1 Missense_Mutation p.E479K 0.52 deleterious(0.01) possibly_damaging(0.735) TCGA-FS-A4FD-06 4 46252399 46252399 A T GABRA2 Missense_Mutation p.L428M 0.38 tolerated(0.07) possibly_damaging(0.901) TCGA-FS-A4FD-06 4 48037960 48037960 G C NIPAL1 Missense_Mutation p.G335A 0.38 tolerated(0.75) benign(0.014) TCGA-FS-A4FD-06 4 49030720 49030720 A G CWH43 Silent p.L447L 0.32 TCGA-FS-A4FD-06 4 68797746 68797746 C T TMPRSS11A Silent p.K98K 0.37 TCGA-FS-A4FD-06 4 70719967 70719967 G T SULT1E1 Missense_Mutation p.L113I 0.27 tolerated(0.12) possibly_damaging(0.905) TCGA-FS-A4FD-06 4 73013426 73013426 A C NPFFR2 Missense_Mutation p.N489T 0.06 tolerated(0.16) benign(0.016) TCGA-FS-A4FD-06 4 81207815 81207815 C T FGF5 Missense_Mutation p.R266C 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A4FD-06 4 85525445 85525445 C T CDS1 Missense_Mutation p.S56F 0.50 deleterious(0.03) benign(0.002) TCGA-FS-A4FD-06 5 101597715 101597715 G A SLCO4C1 Missense_Mutation p.P308S 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-FS-A4FD-06 5 129037271 129037271 G A ADAMTS19 Missense_Mutation p.G1043R 0.30 tolerated(0.21) possibly_damaging(0.47) TCGA-FS-A4FD-06 5 133634294 133634294 G A CDKL3 3'UTR 0.34 TCGA-FS-A4FD-06 5 135290545 135290545 C T LECT2 5'UTR 0.46 TCGA-FS-A4FD-06 5 136328179 136328179 G A SPOCK1 Nonsense_Mutation p.Q234* 0.44 TCGA-FS-A4FD-06 5 13920625 13920625 C T DNAH5 Silent p.E254E 0.42 TCGA-FS-A4FD-06 5 140168308 140168308 C T PCDHA1 Intron 0.64 TCGA-FS-A4FD-06 5 140187316 140187316 A G PCDHA4 Missense_Mutation p.K182E 0.29 deleterious_low_confidence(0.04) benign(0.395) TCGA-FS-A4FD-06 5 140187999 140187999 G A PCDHA4 Silent p.L409L 0.37 TCGA-FS-A4FD-06 5 140531385 140531385 C T PCDHB6 Missense_Mutation p.S516L 0.33 deleterious(0) benign(0.442) TCGA-FS-A4FD-06 5 140773387 140773387 C T PCDHGA8 Missense_Mutation p.S336L 0.41 deleterious_low_confidence(0.01) benign(0.018) TCGA-FS-A4FD-06 5 140784826 140784826 C T PCDHGA9 Silent p.I769I 0.33 TCGA-FS-A4FD-06 5 140788276 140788276 T A PCDHGB6 Missense_Mutation p.D169E 0.50 tolerated(0.29) benign(0.014) TCGA-FS-A4FD-06 5 145843328 145843328 C T TCERG1 Silent p.P369P 0.41 TCGA-FS-A4FD-06 5 149497329 149497329 C T PDGFRB Missense_Mutation p.G997S 0.42 tolerated(0.34) benign(0.005) TCGA-FS-A4FD-06 5 154395735 154395735 G A KIF4B Silent p.K772K 0.42 TCGA-FS-A4FD-06 5 156679782 156679782 G A ITK 3'UTR 0.50 TCGA-FS-A4FD-06 5 156679783 156679783 G A ITK 3'UTR 0.50 TCGA-FS-A4FD-06 5 156915334 156915334 G A ADAM19 Missense_Mutation p.S830L 0.39 tolerated(0.23) benign(0.014) TCGA-FS-A4FD-06 5 159821052 159821052 G A C5orf54 Silent p.I482I 0.76 TCGA-FS-A4FD-06 5 160115038 160115038 C T ATP10B Missense_Mutation p.R15K 0.88 tolerated(0.13) benign(0.257) TCGA-FS-A4FD-06 5 167891788 167891788 C T WWC1 Silent p.L997L 0.35 TCGA-FS-A4FD-06 5 17354348 17354348 C T CTD-2139B15.2 RNA 0.39 TCGA-FS-A4FD-06 5 176764725 176764725 G A LMAN2 Silent p.P165P 0.32 TCGA-FS-A4FD-06 5 33881228 33881228 C A ADAMTS12 Missense_Mutation p.G162V 0.38 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 5 35070254 35070254 A T PRLR Missense_Mutation p.S219R 0.42 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 5 37396597 37396597 C T WDR70 Silent p.L139L 0.32 TCGA-FS-A4FD-06 5 38493841 38493841 G A LIFR Silent p.L644L 0.49 TCGA-FS-A4FD-06 5 39202988 39202988 C T FYB Silent p.G35G 0.49 TCGA-FS-A4FD-06 5 52189567 52189567 C T ITGA1 Missense_Mutation p.S329L 0.31 tolerated(0.06) probably_damaging(0.983) TCGA-FS-A4FD-06 5 666175 666175 C T TPPP Silent p.K125K 0.30 TCGA-FS-A4FD-06 5 71739688 71739688 C T ZNF366 Silent p.R710R 0.30 TCGA-FS-A4FD-06 5 75596704 75596704 G A SV2C Missense_Mutation p.G596E 0.32 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 5 96430490 96430490 C T LIX1 Missense_Mutation p.D271N 0.40 tolerated_low_confidence(0.54) probably_damaging(0.981) TCGA-FS-A4FD-06 6 106552789 106552789 G A PRDM1 Missense_Mutation p.E252K 0.43 tolerated(0.07) possibly_damaging(0.867) TCGA-FS-A4FD-06 6 112671175 112671175 G A RFPL4B Missense_Mutation p.E89K 0.46 tolerated(0.14) benign(0.073) TCGA-FS-A4FD-06 6 117609578 117609578 C T ROS1 3'UTR 0.36 TCGA-FS-A4FD-06 6 12121893 12121893 C T HIVEP1 Missense_Mutation p.S622F 0.26 tolerated(0.08) benign(0.008) TCGA-FS-A4FD-06 6 126176261 126176261 T C NCOA7 Missense_Mutation p.V49A 0.39 deleterious_low_confidence(0.04) benign(0.017) TCGA-FS-A4FD-06 6 128040875 128040875 C T THEMIS Missense_Mutation p.E657K 0.38 tolerated_low_confidence(0.93) benign(0.029) TCGA-FS-A4FD-06 6 128330304 128330304 G A PTPRK Silent p.L768L 0.44 TCGA-FS-A4FD-06 6 129712753 129712753 G A LAMA2 Missense_Mutation p.R1730K 0.42 tolerated(1) benign(0.004) TCGA-FS-A4FD-06 6 130763037 130763037 G A TMEM200A Silent p.R490R 0.34 TCGA-FS-A4FD-06 6 130763105 130763105 C T TMEM200A 3'UTR 0.45 TCGA-FS-A4FD-06 6 132693821 132693821 G A MOXD1 Missense_Mutation p.P197S 0.36 deleterious(0.01) benign(0.281) TCGA-FS-A4FD-06 6 132695931 132695931 G A MOXD1 Intron 0.21 TCGA-FS-A4FD-06 6 146127122 146127122 G A FBXO30 Silent p.T140T 0.41 TCGA-FS-A4FD-06 6 151152311 151152311 G A PLEKHG1 Silent p.R688R 0.52 TCGA-FS-A4FD-06 6 151671190 151671190 C T AKAP12 Missense_Mutation p.P555L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FS-A4FD-06 6 152443613 152443613 G A SYNE1 Silent p.F8784F 0.29 TCGA-FS-A4FD-06 6 152536165 152536165 G A SYNE1 Missense_Mutation p.P7408S 0.37 possibly_damaging(0.809) TCGA-FS-A4FD-06 6 16327573 16327573 G A ATXN1 Silent p.V323V 0.29 TCGA-FS-A4FD-06 6 169648954 169648954 C T THBS2 Missense_Mutation p.R56H 0.38 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 6 24596495 24596495 T A KIAA0319 Missense_Mutation p.D136V 0.19 deleterious(0.05) possibly_damaging(0.703) TCGA-FS-A4FD-06 6 24596497 24596497 C T KIAA0319 Silent p.E135E 0.18 TCGA-FS-A4FD-06 6 31868050 31868050 C T ZBTB12 Missense_Mutation p.V345M 0.26 deleterious(0.01) possibly_damaging(0.623) TCGA-FS-A4FD-06 6 32188241 32188241 C T NOTCH4 Missense_Mutation p.G367E 0.28 deleterious(0.01) probably_damaging(1) TCGA-FS-A4FD-06 6 32522555 32522555 C T RNU1-61P 5'Flank 0.12 TCGA-FS-A4FD-06 6 35960399 35960399 G A SLC26A8 Missense_Mutation p.S227F 0.26 deleterious(0) probably_damaging(0.934) TCGA-FS-A4FD-06 6 36168091 36168091 C T BRPF3 5'UTR 0.19 TCGA-FS-A4FD-06 6 36168151 36168151 C T BRPF3 Missense_Mutation p.P18S 0.18 tolerated(0.3) probably_damaging(0.998) TCGA-FS-A4FD-06 6 36891195 36891195 G A C6orf89 Missense_Mutation p.G348E 0.26 deleterious(0) probably_damaging(0.978) TCGA-FS-A4FD-06 6 36922607 36922607 C T PI16 Missense_Mutation p.P24L 0.17 tolerated(0.16) benign(0.339) TCGA-FS-A4FD-06 6 36922608 36922608 C T PI16 Silent p.P24P 0.17 TCGA-FS-A4FD-06 6 38743715 38743715 C T DNAH8 Silent p.I433I 0.31 TCGA-FS-A4FD-06 6 38957941 38957941 G A DNAH8 Missense_Mutation p.D4186N 0.28 probably_damaging(0.999) TCGA-FS-A4FD-06 6 42175906 42175906 G A MRPS10 3'UTR 0.17 TCGA-FS-A4FD-06 6 43128564 43128564 C T PTK7 Missense_Mutation p.S1061F 0.30 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 6 43477258 43477258 G A LRRC73 Missense_Mutation p.S89F 0.12 deleterious(0.03) benign(0.278) TCGA-FS-A4FD-06 6 44145024 44145024 G A CAPN11 Missense_Mutation p.G428E 0.30 tolerated(1) benign(0.006) TCGA-FS-A4FD-06 6 47202453 47202453 G A TNFRSF21 Missense_Mutation p.S564F 0.64 deleterious(0.03) benign(0.32) TCGA-FS-A4FD-06 6 49986630 49986630 G A DEFB110 3'UTR 0.45 TCGA-FS-A4FD-06 6 50807984 50807984 C T TFAP2B Silent p.S352S 0.51 TCGA-FS-A4FD-06 6 52054140 52054140 G A IL17A 3'UTR 0.41 TCGA-FS-A4FD-06 6 54805092 54805092 C T FAM83B Silent p.A441A 0.29 TCGA-FS-A4FD-06 6 54805093 54805093 C T FAM83B Nonsense_Mutation p.Q442* 0.29 TCGA-FS-A4FD-06 6 55406588 55406588 G A HMGCLL1 Missense_Mutation p.S109F 0.27 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 6 56500490 56500490 G C DST Missense_Mutation p.A491G 0.09 possibly_damaging(0.517) TCGA-FS-A4FD-06 6 71665808 71665808 C T B3GAT2 Missense_Mutation p.A109T 0.32 deleterious(0.02) benign(0.098) TCGA-FS-A4FD-06 6 73879568 73879568 G A KCNQ5 Missense_Mutation p.R542Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 6 74117703 74117703 G A DDX43 Missense_Mutation p.G353E 0.47 deleterious(0.01) possibly_damaging(0.896) TCGA-FS-A4FD-06 6 84234127 84234127 C T PRSS35 Missense_Mutation p.R323W 0.35 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 7 100275731 100275731 G A GNB2 Missense_Mutation p.D170N 0.41 deleterious(0.01) probably_damaging(0.944) TCGA-FS-A4FD-06 7 103175769 103175769 T A RELN Missense_Mutation p.Y2448F 0.35 tolerated(0.11) possibly_damaging(0.79) TCGA-FS-A4FD-06 7 119914770 119914770 G A KCND2 Silent p.P28P 0.42 TCGA-FS-A4FD-06 7 122635433 122635433 C T TAS2R16 Missense_Mutation p.E86K 0.38 tolerated(0.09) benign(0.243) TCGA-FS-A4FD-06 7 123593966 123593966 C T SPAM1 Silent p.I114I 0.35 TCGA-FS-A4FD-06 7 126746621 126746621 G A GRM8 Missense_Mutation p.S219L 0.33 deleterious(0) probably_damaging(0.998) TCGA-FS-A4FD-06 7 137271863 137271863 G A DGKI Nonsense_Mutation p.R469* 0.45 TCGA-FS-A4FD-06 7 142149026 142149026 C T TRBV5-5 Missense_Mutation p.R82Q 0.31 deleterious(0.01) benign(0.222) TCGA-FS-A4FD-06 7 142149356 142149356 G A TRBV5-5 Missense_Mutation p.L13F 0.41 tolerated(0.11) benign(0.05) TCGA-FS-A4FD-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.36 deleterious(0.03) benign(0.003) TCGA-FS-A4FD-06 7 146997262 146997262 G A CNTNAP2 Missense_Mutation p.E460K 0.31 deleterious(0.01) benign(0.092) TCGA-FS-A4FD-06 7 150269905 150269905 G A GIMAP4 Silent p.E249E 0.30 TCGA-FS-A4FD-06 7 150324684 150324684 C T GIMAP6 3'UTR 0.50 TCGA-FS-A4FD-06 7 150417378 150417378 C T GIMAP1 Missense_Mutation p.P96S 0.29 tolerated(0.22) benign(0.063) TCGA-FS-A4FD-06 7 150439623 150439623 G A GIMAP5 Silent p.R132R 0.40 TCGA-FS-A4FD-06 7 150498776 150498776 G A TMEM176A Silent p.Q46Q 0.27 TCGA-FS-A4FD-06 7 24749885 24749885 C T DFNA5 Missense_Mutation p.G274R 0.43 tolerated(0.1) benign(0.055) TCGA-FS-A4FD-06 7 2740153 2740153 C T AMZ1 Missense_Mutation p.S23F 0.39 deleterious(0) probably_damaging(0.997) TCGA-FS-A4FD-06 7 37780110 37780110 C T GPR141 Missense_Mutation p.L39F 0.39 tolerated(0.18) possibly_damaging(0.765) TCGA-FS-A4FD-06 7 40087455 40087455 G A CDK13 Missense_Mutation p.R860Q 0.44 deleterious(0) probably_damaging(0.994) TCGA-FS-A4FD-06 7 45744141 45744141 G A ADCY1 Missense_Mutation p.D915N 0.29 tolerated(0.16) probably_damaging(0.997) TCGA-FS-A4FD-06 7 50530945 50530945 C T DDC Missense_Mutation p.R476Q 0.27 tolerated(1) benign(0.001) TCGA-FS-A4FD-06 7 64643482 64643482 A C INTS4L1 RNA 0.23 TCGA-FS-A4FD-06 7 70800608 70800608 C T WBSCR17 Missense_Mutation p.S104F 0.41 deleterious(0) benign(0.235) TCGA-FS-A4FD-06 7 75053411 75053411 G A POM121C Silent p.S323S 0.43 TCGA-FS-A4FD-06 7 8167595 8167595 C T ICA1 Missense_Mutation p.G413E 0.36 tolerated(0.11) benign(0.061) TCGA-FS-A4FD-06 7 82585753 82585753 T G PCLO Silent p.R1506R 0.30 TCGA-FS-A4FD-06 7 89791381 89791381 C T STEAP1 Missense_Mutation p.H251Y 0.45 tolerated(0.09) possibly_damaging(0.664) TCGA-FS-A4FD-06 7 92734832 92734832 C T SAMD9 Silent p.P193P 0.39 TCGA-FS-A4FD-06 7 97487704 97487704 G A ASNS Silent p.S263S 0.55 TCGA-FS-A4FD-06 8 104081004 104081004 C T ATP6V1C1 3'UTR 0.09 TCGA-FS-A4FD-06 8 104943611 104943611 C T RIMS2 Missense_Mutation p.P789S 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FS-A4FD-06 8 104943612 104943612 C T RIMS2 Missense_Mutation p.P789L 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4FD-06 8 105257282 105257282 G A RIMS2 Missense_Mutation p.G1158E 0.73 deleterious_low_confidence(0) probably_damaging(1) TCGA-FS-A4FD-06 8 106813565 106813565 G A ZFPM2 Missense_Mutation p.E419K 0.20 tolerated(0.17) benign(0.033) TCGA-FS-A4FD-06 8 107782025 107782025 C T ABRA Missense_Mutation p.E132K 0.67 tolerated(0.31) benign(0.026) TCGA-FS-A4FD-06 8 107782308 107782308 C T ABRA Silent p.A37A 0.68 TCGA-FS-A4FD-06 8 113694808 113694808 C T CSMD3 Missense_Mutation p.G847E 0.12 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 8 119391806 119391806 G A SAMD12 Silent p.L152L 0.15 TCGA-FS-A4FD-06 8 124221819 124221819 G A FAM83A 3'UTR 0.25 TCGA-FS-A4FD-06 8 131861957 131861957 G A ADCY8 Missense_Mutation p.P768L 0.14 deleterious(0) benign(0) TCGA-FS-A4FD-06 8 135613761 135613761 C T ZFAT Missense_Mutation p.R734Q 0.26 tolerated(0.1) possibly_damaging(0.754) TCGA-FS-A4FD-06 8 24261599 24261599 C T ADAMDEC1 Silent p.T468T 0.73 TCGA-FS-A4FD-06 8 39776358 39776358 C T IDO1 Missense_Mutation p.P110S 0.67 deleterious(0.02) probably_damaging(1) TCGA-FS-A4FD-06 8 42611578 42611578 G A CHRNA6 Missense_Mutation p.S255L 0.57 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 8 53084474 53084474 C T ST18 Missense_Mutation p.R316Q 0.70 tolerated(1) benign(0.003) TCGA-FS-A4FD-06 8 55541288 55541288 G A RP1 Missense_Mutation p.E1616K 0.70 deleterious(0) possibly_damaging(0.651) TCGA-FS-A4FD-06 8 76470899 76470899 G A HNF4G Missense_Mutation p.D284N 0.17 tolerated(0.09) probably_damaging(0.924) TCGA-FS-A4FD-06 8 77616449 77616449 G A ZFHX4 Silent p.R42R 0.17 TCGA-FS-A4FD-06 8 77616957 77616957 C T ZFHX4 Missense_Mutation p.P212S 0.13 possibly_damaging(0.803) TCGA-FS-A4FD-06 8 77766226 77766226 G T ZFHX4 Missense_Mutation p.D2357Y 0.67 probably_damaging(0.991) TCGA-FS-A4FD-06 8 77766228 77766228 T A ZFHX4 Missense_Mutation p.D2357E 0.67 possibly_damaging(0.523) TCGA-FS-A4FD-06 8 87076256 87076256 C T PSKH2 Missense_Mutation p.D264N 0.17 deleterious(0) probably_damaging(0.991) TCGA-FS-A4FD-06 8 95423532 95423532 G A RAD54B Missense_Mutation p.P106S 0.69 tolerated(0.42) benign(0.004) TCGA-FS-A4FD-06 8 97621790 97621790 T G SDC2 3'UTR 0.14 TCGA-FS-A4FD-06 8 99441030 99441030 C T KCNS2 Silent p.L275L 0.74 TCGA-FS-A4FD-06 9 101061633 101061633 C T GABBR2 Silent p.L805L 0.41 TCGA-FS-A4FD-06 9 109689509 109689509 C T ZNF462 Missense_Mutation p.P1106S 0.59 probably_damaging(0.996) TCGA-FS-A4FD-06 9 114305358 114305358 G A ZNF483 Missense_Mutation p.G715R 0.45 tolerated(0.17) probably_damaging(0.991) TCGA-FS-A4FD-06 9 114500710 114500710 C T C9orf84 Missense_Mutation p.E359K 0.31 deleterious(0.04) benign(0.008) TCGA-FS-A4FD-06 9 119188125 119188125 C A ASTN2 3'UTR 0.21 TCGA-FS-A4FD-06 9 126125273 126125273 C T CRB2 Missense_Mutation p.P75L 0.52 deleterious(0) unknown(0) TCGA-FS-A4FD-06 9 127566401 127566401 G A OLFML2A Silent p.L316L 0.38 TCGA-FS-A4FD-06 9 127566402 127566402 G A OLFML2A Missense_Mutation p.E317K 0.39 tolerated(0.17) benign(0.004) TCGA-FS-A4FD-06 9 130502597 130502597 C T SH2D3C Missense_Mutation p.G714S 0.46 tolerated(0.11) probably_damaging(1) TCGA-FS-A4FD-06 9 131219590 131219590 C T ODF2 5'UTR 0.43 TCGA-FS-A4FD-06 9 133805028 133805028 C T FIBCD1 Missense_Mutation p.G160R 0.31 deleterious(0.03) benign(0.288) TCGA-FS-A4FD-06 9 133936604 133936604 C T LAMC3 Nonsense_Mutation p.Q781* 0.46 TCGA-FS-A4FD-06 9 133961052 133961052 C T LAMC3 Missense_Mutation p.S1391F 0.47 deleterious(0.01) benign(0.12) TCGA-FS-A4FD-06 9 137716622 137716622 G A COL5A1 Missense_Mutation p.M1625I 0.29 unknown(0) TCGA-FS-A4FD-06 9 138670531 138670531 C T KCNT1 Intron 0.61 TCGA-FS-A4FD-06 9 140136473 140136473 G A TUBB4B Missense_Mutation p.G93S 0.29 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-FS-A4FD-06 9 14805142 14805142 G A FREM1 Nonsense_Mutation p.Q1095* 0.40 TCGA-FS-A4FD-06 9 27949342 27949342 G A LINGO2 Missense_Mutation p.S443F 0.35 tolerated(0.72) benign(0.007) TCGA-FS-A4FD-06 9 37745577 37745577 G A FRMPD1 Missense_Mutation p.G1183E 0.31 tolerated_low_confidence(0.55) benign(0.003) TCGA-FS-A4FD-06 9 78907154 78907154 C T PCSK5 Missense_Mutation p.P1050S 0.44 tolerated(0.19) possibly_damaging(0.707) TCGA-FS-A4FD-06 9 80144169 80144169 C T GNA14 Missense_Mutation p.G42E 0.44 deleterious(0) probably_damaging(1) TCGA-FS-A4FD-06 9 8499713 8499713 C T PTPRD Silent p.V752V 0.24 TCGA-FS-A4FD-06 9 8525035 8525035 C T PTPRD Missense_Mutation p.G190E 0.33 deleterious(0) probably_damaging(0.999) TCGA-FS-A4FD-06 9 95021281 95021281 C T IARS Splice_Site p.X624_splice 0.25 TCGA-FS-A4FD-06 X 109764519 109764519 G A TDGF1P3 RNA 0.94 TCGA-FS-A4FD-06 X 115304211 115304211 C T AGTR2 Silent p.F226F 0.70 TCGA-FS-A4FD-06 X 130419966 130419966 C T IGSF1 Missense_Mutation p.E52K 0.73 tolerated(0.26) benign(0.018) TCGA-FS-A4FD-06 X 135593319 135593319 C T HTATSF1 Missense_Mutation p.P472L 0.69 tolerated_low_confidence(0.59) benign(0.001) TCGA-FS-A4FD-06 X 145075816 145075816 G A MIR890 RNA 0.86 TCGA-FS-A4FD-06 X 150832776 150832776 C T PASD1 Missense_Mutation p.P343S 0.50 tolerated(0.68) benign(0.233) TCGA-FS-A4FD-06 X 150842480 150842480 C T PASD1 Missense_Mutation p.S666F 0.69 deleterious(0) possibly_damaging(0.683) TCGA-FS-A4FD-06 X 151899845 151899845 C T MAGEA12 3'UTR 0.88 TCGA-FS-A4FD-06 X 3241356 3241356 G A MXRA5 Silent p.V790V 0.76 TCGA-FS-A4FD-06 X 34148475 34148475 C T FAM47A Missense_Mutation p.D641N 0.88 tolerated(0.08) probably_damaging(0.981) TCGA-FS-A4FD-06 X 47774919 47774919 C T ZNF81 Missense_Mutation p.P292S 0.71 tolerated(0.11) benign(0.006) TCGA-FS-A4FD-06 X 54037695 54037695 A G PHF8 Missense_Mutation p.I305T 0.55 deleterious(0) possibly_damaging(0.872) TCGA-FS-A4FD-06 X 5811248 5811248 G A NLGN4X Silent p.F687F 0.75 TCGA-FS-A4FD-06 X 84563207 84563207 C T POF1B Missense_Mutation p.D325N 0.67 deleterious(0.03) benign(0.019) TCGA-FS-A4FD-06 X 99849348 99849348 G A TNMD Missense_Mutation p.E138K 0.79 tolerated(0.31) benign(0.138) TCGA-FW-A3I3-06 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.45 TCGA-FW-A3I3-06 10 91198576 91198576 C T SLC16A12 Silent p.L271L 0.82 TCGA-FW-A3I3-06 11 63278567 63278567 G A LGALS12 Missense_Mutation p.S206N 0.07 tolerated(0.27) benign(0.014) TCGA-FW-A3I3-06 11 65983735 65983735 G A PACS1 Splice_Site p.X269_splice 0.11 TCGA-FW-A3I3-06 12 64383741 64383741 C A SRGAP1 Missense_Mutation p.N105K 0.53 tolerated(0.09) benign(0.439) TCGA-FW-A3I3-06 12 64383742 64383742 C A SRGAP1 Missense_Mutation p.Q106K 0.50 deleterious(0) benign(0.41) TCGA-FW-A3I3-06 12 64383743 64383743 A C SRGAP1 Missense_Mutation p.Q106P 0.51 deleterious(0) possibly_damaging(0.756) TCGA-FW-A3I3-06 12 70953095 70953095 G T PTPRB Intron 0.27 TCGA-FW-A3I3-06 13 110839549 110839549 G T COL4A1 Missense_Mutation p.T555K 0.05 benign(0.012) TCGA-FW-A3I3-06 13 46721149 46721149 G A LCP1 Silent p.V356V 0.52 TCGA-FW-A3I3-06 14 24839702 24839702 A G NFATC4 Silent p.G429G 0.33 TCGA-FW-A3I3-06 14 74059007 74059007 A G ACOT4 Missense_Mutation p.E115G 0.26 tolerated(0.24) benign(0.004) TCGA-FW-A3I3-06 14 88442747 88442747 G T GALC Missense_Mutation p.S236Y 0.58 tolerated(0.63) benign(0.425) TCGA-FW-A3I3-06 14 88477718 88477718 T A GPR65 Nonsense_Mutation p.L176* 0.28 TCGA-FW-A3I3-06 15 64499781 64499781 C G CSNK1G1 Missense_Mutation p.R231T 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3I3-06 15 83346082 83346082 G C AP3B2 Missense_Mutation p.P478A 0.15 tolerated(0.09) benign(0.241) TCGA-FW-A3I3-06 15 86123866 86123866 T G AKAP13 Missense_Mutation p.L856R 0.29 deleterious_low_confidence(0.03) benign(0.016) TCGA-FW-A3I3-06 16 76528954 76528954 G A CNTNAP4 Missense_Mutation p.R670Q 0.35 tolerated(0.15) benign(0.015) TCGA-FW-A3I3-06 16 87445976 87445979 GCAG - ZCCHC14 Frame_Shift_Del p.P646Lfs*17 0.21 TCGA-FW-A3I3-06 16 89806404 89806405 CT - FANCA Frame_Shift_Del p.S1311* 0.27 TCGA-FW-A3I3-06 17 11837333 11837333 C - DNAH9 Frame_Shift_Del p.S4145Ffs*44 0.26 TCGA-FW-A3I3-06 17 29553542 29553542 C - NF1 Frame_Shift_Del p.P698Lfs*50 0.43 TCGA-FW-A3I3-06 17 35348139 35348139 G A AATF Missense_Mutation p.D461N 0.35 tolerated(0.05) possibly_damaging(0.766) TCGA-FW-A3I3-06 17 48246488 48246488 C G SGCA Missense_Mutation p.S207C 0.43 deleterious(0) probably_damaging(0.997) TCGA-FW-A3I3-06 17 58282820 58282820 G A USP32 Silent p.V1079V 0.10 TCGA-FW-A3I3-06 17 62290231 62290231 G A TEX2 Silent p.L449L 0.21 TCGA-FW-A3I3-06 17 72863050 72863050 C T FDXR Silent p.A85A 0.27 TCGA-FW-A3I3-06 17 79985969 79985969 G A LRRC45 Missense_Mutation p.E332K 0.33 deleterious(0.03) probably_damaging(0.917) TCGA-FW-A3I3-06 19 18120412 18120412 G A ARRDC2 Silent p.A167A 0.22 TCGA-FW-A3I3-06 19 49398288 49398288 G A TULP2 Nonsense_Mutation p.R161* 0.19 TCGA-FW-A3I3-06 19 54849692 54849692 G A LILRA4 Silent p.S110S 0.30 TCGA-FW-A3I3-06 19 57132975 57132975 G A ZNF71 Missense_Mutation p.R107H 0.17 tolerated(0.62) benign(0.001) TCGA-FW-A3I3-06 1 109734382 109734382 C T KIAA1324 Missense_Mutation p.T527M 0.84 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3I3-06 1 149783741 149783741 C G HIST2H2BF Silent p.L46L 0.41 TCGA-FW-A3I3-06 1 150527966 150527966 T C ADAMTSL4 Silent p.R432R 0.13 TCGA-FW-A3I3-06 1 186277987 186277987 C T PRG4 Missense_Mutation p.P1046S 0.64 unknown(0) TCGA-FW-A3I3-06 1 201195105 201195105 C T IGFN1 Missense_Mutation p.A3547V 0.17 benign(0.076) TCGA-FW-A3I3-06 1 94884036 94884036 T A ABCD3 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-FW-A3I3-06 20 43933112 43933112 C T MATN4 Silent p.P133P 0.38 TCGA-FW-A3I3-06 20 9496748 9496748 C G LAMP5 Silent p.R113R 0.21 TCGA-FW-A3I3-06 22 44178123 44178123 G T EFCAB6 Missense_Mutation p.H26N 0.06 deleterious(0.02) benign(0.28) TCGA-FW-A3I3-06 2 163059576 163059576 T C FAP Missense_Mutation p.H376R 0.42 deleterious(0) benign(0.068) TCGA-FW-A3I3-06 2 166892972 166892972 A G SCN1A Silent p.D1005D 0.41 TCGA-FW-A3I3-06 2 60688844 60688844 G A BCL11A Silent p.G401G 0.51 TCGA-FW-A3I3-06 2 74058084 74058084 G A STAMBP Missense_Mutation p.R34H 0.50 deleterious(0.01) probably_damaging(0.928) TCGA-FW-A3I3-06 3 139236375 139236375 G T RBP1 3'UTR 0.12 TCGA-FW-A3I3-06 3 164733006 164733006 C A SI Nonsense_Mutation p.G1302* 0.50 TCGA-FW-A3I3-06 3 195102638 195102638 G A ACAP2 Silent p.V75V 0.11 TCGA-FW-A3I3-06 4 126329750 126329750 A G FAT4 Silent p.E1907E 0.61 TCGA-FW-A3I3-06 4 85639647 85639647 T C WDFY3 Missense_Mutation p.H2561R 0.55 deleterious(0.01) probably_damaging(0.991) TCGA-FW-A3I3-06 5 1232963 1232963 G A SLC6A18 Silent p.P133P 0.18 TCGA-FW-A3I3-06 5 147820746 147820746 C T FBXO38 Nonsense_Mutation p.R1037* 0.30 TCGA-FW-A3I3-06 5 15936915 15936915 G A FBXL7 Missense_Mutation p.V366M 0.11 tolerated(0.12) probably_damaging(0.962) TCGA-FW-A3I3-06 5 169111328 169111328 C T DOCK2 Silent p.Y245Y 0.25 TCGA-FW-A3I3-06 5 178413398 178413398 C G GRM6 Silent p.S619S 0.12 TCGA-FW-A3I3-06 5 24537572 24537572 A T CDH10 Missense_Mutation p.I148N 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3I3-06 5 38407208 38407208 C T EGFLAM Silent p.C369C 0.28 TCGA-FW-A3I3-06 5 55088554 55088554 T A DDX4 Nonsense_Mutation p.L463* 0.09 TCGA-FW-A3I3-06 5 74072447 74072447 C T NSA2 Missense_Mutation p.T245I 0.43 deleterious(0) benign(0.028) TCGA-FW-A3I3-06 6 90578514 90578514 G A CASP8AP2 RNA 0.41 TCGA-FW-A3I3-06 7 100883078 100883078 G A FIS1 3'UTR 0.19 TCGA-FW-A3I3-06 7 102614122 102614122 G A FBXL13 Intron 0.24 TCGA-FW-A3I3-06 7 144288534 144288534 C T TPK1 Silent p.L161L 0.45 TCGA-FW-A3I3-06 7 156762477 156762477 G A NOM1 3'UTR 0.36 TCGA-FW-A3I3-06 7 34997678 34997678 G A DPY19L1 Missense_Mutation p.S293F 0.55 deleterious(0) probably_damaging(0.964) TCGA-FW-A3I3-06 8 139164785 139164785 T G FAM135B Missense_Mutation p.S645R 0.27 tolerated(0.13) benign(0.303) TCGA-FW-A3I3-06 8 142451278 142451278 G A CTD-3064M3.7 3'Flank 0.52 TCGA-FW-A3I3-06 8 16021583 16021583 A T MSR1 Missense_Mutation p.L270I 0.34 tolerated(0.09) possibly_damaging(0.76) TCGA-FW-A3I3-06 8 17406213 17406213 T C SLC7A2 Missense_Mutation p.S227P 0.32 deleterious(0) probably_damaging(0.985) TCGA-FW-A3I3-06 8 95262715 95262715 C A GEM Missense_Mutation p.Q238H 0.47 deleterious(0) probably_damaging(0.998) TCGA-FW-A3I3-06 9 129595533 129595533 G A ZBTB43 Missense_Mutation p.E249K 0.71 deleterious(0.01) probably_damaging(0.98) TCGA-FW-A3I3-06 9 137650106 137650106 C T COL5A1 Silent p.D633D 0.86 TCGA-FW-A3I3-06 9 21217066 21217066 A T IFNA16 Missense_Mutation p.F80Y 0.87 deleterious(0.01) benign(0.063) TCGA-FW-A3I3-06 9 23701589 23701589 A G ELAVL2 Silent p.G167G 0.04 TCGA-FW-A3I3-06 9 38396134 38396134 C A ALDH1B1 Missense_Mutation p.P130H 0.24 deleterious(0) possibly_damaging(0.877) TCGA-FW-A3I3-06 9 39888270 39888270 C T SPATA31A2 Silent p.L419L 0.26 TCGA-FW-A3I3-06 9 90321631 90321631 G A DAPK1 Silent p.V1215V 0.07 TCGA-FW-A3I3-06 X 46466517 46466517 G A SLC9A7 Missense_Mutation p.T683M 0.94 tolerated(0.2) benign(0.002) TCGA-FW-A3R5-06 10 100144721 100144721 C T PYROXD2 Missense_Mutation p.G553E 0.24 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 100148243 100148243 G A PYROXD2 Missense_Mutation p.P439S 0.41 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 10 100157211 100157211 G A PYROXD2 Silent p.A172A 0.27 TCGA-FW-A3R5-06 10 100159990 100159990 G A PYROXD2 Nonsense_Mutation p.R114* 0.30 TCGA-FW-A3R5-06 10 101147941 101147941 G A CNNM1 Missense_Mutation p.E853K 0.20 deleterious_low_confidence(0.01) benign(0.318) TCGA-FW-A3R5-06 10 101180539 101180539 G A GOT1 Missense_Mutation p.P48S 0.18 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 10 101510123 101510123 C T CUTC Intron 0.29 TCGA-FW-A3R5-06 10 101567960 101567960 C T ABCC2 Missense_Mutation p.P597S 0.25 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 10 101590503 101590503 C T ABCC2 Silent p.S926S 0.34 TCGA-FW-A3R5-06 10 101606801 101606801 G A ABCC2 Silent p.L1410L 0.25 TCGA-FW-A3R5-06 10 101715232 101715232 G A DNMBP Missense_Mutation p.R667C 0.24 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 10 101715887 101715887 G A DNMBP Silent p.P448P 0.20 TCGA-FW-A3R5-06 10 101816796 101816796 C T CPN1 Missense_Mutation p.E329K 0.24 deleterious(0.02) possibly_damaging(0.783) TCGA-FW-A3R5-06 10 101835746 101835746 G A CPN1 Silent p.I114I 0.26 TCGA-FW-A3R5-06 10 101912014 101912014 G A ERLIN1 Silent p.F307F 0.19 TCGA-FW-A3R5-06 10 102051118 102051118 C T PKD2L1 Silent p.G649G 0.42 TCGA-FW-A3R5-06 10 102056928 102056928 G A PKD2L1 Missense_Mutation p.P332S 0.23 tolerated(0.06) possibly_damaging(0.562) TCGA-FW-A3R5-06 10 102057327 102057327 G A PKD2L1 Silent p.F256F 0.16 TCGA-FW-A3R5-06 10 102089764 102089764 C T PKD2L1 Missense_Mutation p.G33R 0.33 tolerated(0.14) benign(0.007) TCGA-FW-A3R5-06 10 102120778 102120778 G C SCD 3'UTR 0.23 TCGA-FW-A3R5-06 10 102240871 102240871 G A WNT8B Missense_Mutation p.G120R 0.36 deleterious(0.03) possibly_damaging(0.881) TCGA-FW-A3R5-06 10 102250605 102250605 G A SEC31B Silent p.T836T 0.17 TCGA-FW-A3R5-06 10 102269264 102269264 G A SEC31B Missense_Mutation p.H70Y 0.38 deleterious(0.05) benign(0.078) TCGA-FW-A3R5-06 10 102283522 102283522 G A NDUFB8 3'UTR 0.44 TCGA-FW-A3R5-06 10 102584444 102584444 C T PAX2 Missense_Mutation p.P343L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 102584704 102584704 G A PAX2 Intron 0.33 TCGA-FW-A3R5-06 10 102584735 102584735 A G PAX2 Intron 0.19 TCGA-FW-A3R5-06 10 102676652 102676652 C T FAM178A Silent p.S170S 0.29 TCGA-FW-A3R5-06 10 102732570 102732570 G A SEMA4G 5'Flank 0.18 TCGA-FW-A3R5-06 10 102743580 102743580 G A SEMA4G Missense_Mutation p.E742K 0.36 tolerated(0.86) possibly_damaging(0.574) TCGA-FW-A3R5-06 10 102789950 102789950 G A PDZD7 Silent p.F9F 0.20 TCGA-FW-A3R5-06 10 102822738 102822738 C T KAZALD1 Missense_Mutation p.S130L 0.25 deleterious(0) benign(0.124) TCGA-FW-A3R5-06 10 102849587 102849587 C T TLX1NB Missense_Mutation p.E26K 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.801) TCGA-FW-A3R5-06 10 102849714 102849714 G A TLX1NB 5'UTR 0.33 TCGA-FW-A3R5-06 10 102987154 102987154 C T LBX1 Missense_Mutation p.G240D 0.26 tolerated_low_confidence(0.41) benign(0.081) TCGA-FW-A3R5-06 10 103339570 103339570 G A POLL Silent p.F456F 0.13 TCGA-FW-A3R5-06 10 103345861 103345861 G A POLL Silent p.A56A 0.27 TCGA-FW-A3R5-06 10 103433321 103433321 G A FBXW4 Silent p.L156L 0.20 TCGA-FW-A3R5-06 10 103541351 103541351 G A NPM3 3'UTR 0.32 TCGA-FW-A3R5-06 10 103550824 103550824 G A MGEA5 Silent p.S761S 0.32 TCGA-FW-A3R5-06 10 103587032 103587032 G A KCNIP2 3'Flank 0.32 TCGA-FW-A3R5-06 10 103603287 103603287 G A KCNIP2 Silent p.S13S 0.33 TCGA-FW-A3R5-06 10 103755098 103755098 G A C10orf76 Missense_Mutation p.H389Y 0.08 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 10 1038576 1038576 C T GTPBP4 Silent p.L66L 0.29 TCGA-FW-A3R5-06 10 103897786 103897786 C T PPRC1 Silent p.S111S 0.37 TCGA-FW-A3R5-06 10 103898452 103898452 C T PPRC1 Missense_Mutation p.S140F 0.30 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 10 103900460 103900460 C T PPRC1 Missense_Mutation p.S732F 0.32 deleterious_low_confidence(0) benign(0.26) TCGA-FW-A3R5-06 10 103908594 103908594 C T PPRC1 Silent p.F1546F 0.34 TCGA-FW-A3R5-06 10 103908622 103908622 C T PPRC1 Nonsense_Mutation p.R1556* 0.33 TCGA-FW-A3R5-06 10 103912198 103912198 C T NOLC1 Missense_Mutation p.P11S 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-FW-A3R5-06 10 103989043 103989043 C T ELOVL3 3'UTR 0.19 TCGA-FW-A3R5-06 10 103989062 103989062 G A ELOVL3 3'UTR 0.18 TCGA-FW-A3R5-06 10 104129725 104129725 C T GBF1 Missense_Mutation p.A1107V 0.29 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 10 104136527 104136527 C T GBF1 Missense_Mutation p.R1419W 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 104159900 104159900 C T NFKB2 Silent p.I511I 0.09 TCGA-FW-A3R5-06 10 104164482 104164482 C T PSD Missense_Mutation p.S853N 0.21 tolerated(0.8) benign(0.151) TCGA-FW-A3R5-06 10 104164979 104164979 G A PSD Silent p.F786F 0.41 TCGA-FW-A3R5-06 10 104170845 104170845 G A PSD Silent p.L657L 0.15 TCGA-FW-A3R5-06 10 104174648 104174648 C T PSD Missense_Mutation p.E366K 0.28 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 10 104174892 104174892 G A PSD Silent p.S284S 0.26 TCGA-FW-A3R5-06 10 104176567 104176567 G A PSD Missense_Mutation p.R77C 0.30 tolerated_low_confidence(0.1) benign(0) TCGA-FW-A3R5-06 10 104176568 104176568 G T PSD Silent p.P76P 0.28 TCGA-FW-A3R5-06 10 104182012 104182012 C T FBXL15 Missense_Mutation p.L226F 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 10 104230440 104230440 C T TMEM180 Silent p.S90S 0.24 TCGA-FW-A3R5-06 10 104230740 104230740 C T TMEM180 Silent p.S190S 0.29 TCGA-FW-A3R5-06 10 104235581 104235581 A C TMEM180 Missense_Mutation p.Q465P 0.27 tolerated(0.2) possibly_damaging(0.861) TCGA-FW-A3R5-06 10 104241922 104241922 G A ACTR1A Missense_Mutation p.S254F 0.22 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 10 104404680 104404680 C T TRIM8 Silent p.P102P 0.29 TCGA-FW-A3R5-06 10 104488271 104488271 C T SFXN2 Missense_Mutation p.S139F 0.34 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 10 104495636 104495636 C T SFXN2 Missense_Mutation p.P280L 0.07 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 10 104572539 104572539 C T WBP1L Silent p.P181P 0.42 TCGA-FW-A3R5-06 10 104592419 104592419 C T CYP17A1 Missense_Mutation p.E330K 0.30 tolerated(0.25) benign(0.025) TCGA-FW-A3R5-06 10 104596855 104596855 C T CYP17A1 Silent p.K88K 0.30 TCGA-FW-A3R5-06 10 104597133 104597133 G A CYP17A1 5'UTR 0.22 TCGA-FW-A3R5-06 10 104679800 104679800 C T CNNM2 Silent p.P521P 0.30 TCGA-FW-A3R5-06 10 104835967 104835967 C T CNNM2 Silent p.L786L 0.32 TCGA-FW-A3R5-06 10 105005945 105005945 C T RPEL1 Silent p.D64D 0.27 TCGA-FW-A3R5-06 10 105006081 105006081 G A RPEL1 Missense_Mutation p.E110K 0.07 tolerated(0.26) possibly_damaging(0.709) TCGA-FW-A3R5-06 10 105174066 105174066 C T PDCD11 Silent p.I450I 0.30 TCGA-FW-A3R5-06 10 105174832 105174832 C T PDCD11 Missense_Mutation p.P481L 0.34 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 10 105215200 105215200 C T CALHM1 Missense_Mutation p.R287K 0.33 tolerated(1) benign(0) TCGA-FW-A3R5-06 10 105215432 105215432 T A CALHM1 Missense_Mutation p.T210S 0.11 tolerated(0.33) benign(0.103) TCGA-FW-A3R5-06 10 105218356 105218356 G A CALHM1 Silent p.A51A 0.22 TCGA-FW-A3R5-06 10 105330779 105330779 G A NEURL1 Missense_Mutation p.S79N 0.12 tolerated(0.33) possibly_damaging(0.497) TCGA-FW-A3R5-06 10 105330819 105330819 C T NEURL1 Silent p.A92A 0.28 TCGA-FW-A3R5-06 10 105331392 105331392 C T NEURL1 Silent p.A154A 0.33 TCGA-FW-A3R5-06 10 105344435 105344435 G A NEURL1 Silent p.E264E 0.27 TCGA-FW-A3R5-06 10 105349891 105349891 G A NEURL1 Missense_Mutation p.G496E 0.21 tolerated(0.12) benign(0.086) TCGA-FW-A3R5-06 10 105361807 105361807 G A SH3PXD2A Silent p.S1028S 0.30 TCGA-FW-A3R5-06 10 105386875 105386875 G A SH3PXD2A Missense_Mutation p.S230F 0.25 tolerated(0.79) benign(0.361) TCGA-FW-A3R5-06 10 105484080 105484080 C T SH3PXD2A Missense_Mutation p.E116K 0.37 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 10 105763016 105763016 C T SLK Missense_Mutation p.P694S 0.24 tolerated(0.85) benign(0.006) TCGA-FW-A3R5-06 10 105803263 105803263 G A COL17A1 Silent p.A837A 0.31 TCGA-FW-A3R5-06 10 105831820 105831820 G A COL17A1 Nonsense_Mutation p.R145* 0.40 TCGA-FW-A3R5-06 10 105833949 105833949 C T COL17A1 Silent p.K124K 0.30 TCGA-FW-A3R5-06 10 105840406 105840406 C T COL17A1 Missense_Mutation p.R9Q 0.27 unknown(0) TCGA-FW-A3R5-06 10 105905303 105905303 T C WDR96 Missense_Mutation p.K1292R 0.17 tolerated(0.58) benign(0.065) TCGA-FW-A3R5-06 10 105905313 105905313 G A WDR96 Missense_Mutation p.R1289C 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-FW-A3R5-06 10 105920842 105920842 C T WDR96 Missense_Mutation p.E1165K 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 105923959 105923959 G A WDR96 Nonsense_Mutation p.R1047* 0.24 TCGA-FW-A3R5-06 10 105947179 105947179 C T WDR96 Missense_Mutation p.E587K 0.33 deleterious(0.04) possibly_damaging(0.572) TCGA-FW-A3R5-06 10 105963467 105963467 G A WDR96 Missense_Mutation p.S353F 0.32 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 105965741 105965741 C T WDR96 Missense_Mutation p.G315S 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 10 105990440 105990440 G A WDR96 Missense_Mutation p.P76L 0.24 tolerated(0.14) benign(0.099) TCGA-FW-A3R5-06 10 106074105 106074105 G A ITPRIP 3'UTR 0.31 TCGA-FW-A3R5-06 10 106074292 106074292 G A ITPRIP Silent p.F506F 0.22 TCGA-FW-A3R5-06 10 106074624 106074624 G A ITPRIP Silent p.L396L 0.20 TCGA-FW-A3R5-06 10 106074935 106074935 G A ITPRIP Missense_Mutation p.S292F 0.26 deleterious(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 10 106075049 106075049 C T ITPRIP Missense_Mutation p.S254N 0.30 deleterious(0.01) benign(0.007) TCGA-FW-A3R5-06 10 106075177 106075177 G A ITPRIP Silent p.F211F 0.33 TCGA-FW-A3R5-06 10 106075309 106075309 G A ITPRIP Silent p.F167F 0.28 TCGA-FW-A3R5-06 10 106118213 106118213 G A CCDC147 Missense_Mutation p.E42K 0.23 deleterious(0.03) possibly_damaging(0.767) TCGA-FW-A3R5-06 10 106121808 106121808 G A CCDC147 Missense_Mutation p.D107N 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-FW-A3R5-06 10 106121904 106121904 G A CCDC147 Missense_Mutation p.G139R 0.36 deleterious(0.02) benign(0.188) TCGA-FW-A3R5-06 10 106124535 106124535 G A CCDC147 Missense_Mutation p.R162K 0.26 tolerated(0.06) possibly_damaging(0.828) TCGA-FW-A3R5-06 10 106124613 106124613 G A CCDC147 Missense_Mutation p.R188Q 0.36 tolerated(0.3) benign(0.003) TCGA-FW-A3R5-06 10 106124630 106124630 G A CCDC147 Missense_Mutation p.E194K 0.32 tolerated(0.13) benign(0.343) TCGA-FW-A3R5-06 10 106153205 106153205 G A CCDC147 Missense_Mutation p.R549Q 0.30 tolerated(0.33) benign(0.039) TCGA-FW-A3R5-06 10 106163486 106163486 G A CCDC147 Splice_Site p.X680_splice 0.14 TCGA-FW-A3R5-06 10 1063098 1063100 CGT TG GTPBP4 Frame_Shift_Del p.V613Gfs*4 0.23 TCGA-FW-A3R5-06 10 106602608 106602608 C T SORCS3 Missense_Mutation p.S229L 0.19 deleterious(0) possibly_damaging(0.703) TCGA-FW-A3R5-06 10 106675690 106675690 G A SORCS3 Silent p.K265K 0.24 TCGA-FW-A3R5-06 10 106865267 106865267 C T SORCS3 Silent p.F402F 0.20 TCGA-FW-A3R5-06 10 106899194 106899194 C T SORCS3 Nonsense_Mutation p.R418* 0.30 TCGA-FW-A3R5-06 10 106907399 106907399 G A SORCS3 Missense_Mutation p.E443K 0.26 deleterious(0) possibly_damaging(0.728) TCGA-FW-A3R5-06 10 106917009 106917009 G A SORCS3 Silent p.V532V 0.08 TCGA-FW-A3R5-06 10 106917017 106917017 G A SORCS3 Missense_Mutation p.R535K 0.15 tolerated(0.19) benign(0.023) TCGA-FW-A3R5-06 10 106917020 106917020 G A SORCS3 Missense_Mutation p.G536E 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 10 106918652 106918652 C T SORCS3 Silent p.P544P 0.23 TCGA-FW-A3R5-06 10 106918708 106918708 G A SORCS3 Missense_Mutation p.R563K 0.35 tolerated(0.06) benign(0.041) TCGA-FW-A3R5-06 10 106924104 106924104 C T SORCS3 Silent p.F592F 0.33 TCGA-FW-A3R5-06 10 106960963 106960963 G A SORCS3 Missense_Mutation p.G738E 0.17 tolerated(0.9) benign(0.027) TCGA-FW-A3R5-06 10 106970943 106970943 C T SORCS3 Silent p.F770F 0.33 TCGA-FW-A3R5-06 10 106976817 106976817 G A SORCS3 Missense_Mutation p.V891M 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 107012559 107012559 C T SORCS3 Silent p.I1044I 0.31 TCGA-FW-A3R5-06 10 107022146 107022146 G A SORCS3 Missense_Mutation p.M1167I 0.31 deleterious(0) benign(0.313) TCGA-FW-A3R5-06 10 107022182 107022182 A T SORCS3 Missense_Mutation p.K1179N 0.28 tolerated(0.51) benign(0.015) TCGA-FW-A3R5-06 10 108339003 108339003 G A SORCS1 Silent p.I1126I 0.19 TCGA-FW-A3R5-06 10 108377998 108377998 G A SORCS1 Silent p.F943F 0.21 TCGA-FW-A3R5-06 10 108389018 108389018 G A SORCS1 Silent p.T868T 0.44 TCGA-FW-A3R5-06 10 111872536 111872536 C T ADD3 Missense_Mutation p.A66V 0.26 tolerated(0.28) benign(0.348) TCGA-FW-A3R5-06 10 112838180 112838180 C A ADRA2A Silent p.I142I 0.23 TCGA-FW-A3R5-06 10 112838960 112838960 G A ADRA2A Nonsense_Mutation p.W402* 0.26 TCGA-FW-A3R5-06 10 112838991 112838991 G A ADRA2A Missense_Mutation p.A413T 0.27 deleterious(0.05) possibly_damaging(0.883) TCGA-FW-A3R5-06 10 11363309 11363309 C T CELF2 Silent p.S418S 0.32 TCGA-FW-A3R5-06 10 113920566 113920566 G A GPAM Missense_Mutation p.R519C 0.18 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 10 113924290 113924290 G A GPAM Missense_Mutation p.P434S 0.23 tolerated(0.76) benign(0.004) TCGA-FW-A3R5-06 10 113935433 113935433 A T GPAM Missense_Mutation p.L113H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 10 114053792 114053792 C T TECTB Missense_Mutation p.P215L 0.23 tolerated(0.2) benign(0.324) TCGA-FW-A3R5-06 10 114061871 114061871 C T TECTB Missense_Mutation p.S307F 0.29 tolerated(0.44) benign(0.049) TCGA-FW-A3R5-06 10 114136107 114136107 G A ACSL5 Missense_Mutation p.E14K 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.502) TCGA-FW-A3R5-06 10 114136163 114136163 C T ACSL5 Silent p.S32S 0.11 TCGA-FW-A3R5-06 10 114154743 114154743 G A ACSL5 Silent p.P69P 0.32 TCGA-FW-A3R5-06 10 114154814 114154814 C T ACSL5 Missense_Mutation p.P93L 0.26 deleterious(0.05) possibly_damaging(0.662) TCGA-FW-A3R5-06 10 114181785 114181785 G A ACSL5 Missense_Mutation p.E546K 0.32 tolerated(0.27) probably_damaging(0.994) TCGA-FW-A3R5-06 10 114903687 114903687 C T TCF7L2 Missense_Mutation p.P231S 0.22 tolerated(0.35) probably_damaging(0.999) TCGA-FW-A3R5-06 10 1149546 1149546 C T WDR37 Missense_Mutation p.S244F 0.25 deleterious(0) benign(0.039) TCGA-FW-A3R5-06 10 11504555 11504555 G A USP6NL Missense_Mutation p.S808L 0.22 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-FW-A3R5-06 10 11504573 11504573 G A USP6NL Missense_Mutation p.P802L 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 11504574 11504574 G A USP6NL Missense_Mutation p.P802S 0.25 tolerated_low_confidence(0.1) probably_damaging(0.919) TCGA-FW-A3R5-06 10 11505674 11505674 G A USP6NL Missense_Mutation p.P435L 0.28 tolerated(0.34) benign(0.001) TCGA-FW-A3R5-06 10 115312813 115312813 C T HABP2 5'UTR 0.24 TCGA-FW-A3R5-06 10 115335717 115335717 C T HABP2 Silent p.F95F 0.22 TCGA-FW-A3R5-06 10 115341664 115341664 G A HABP2 Missense_Mutation p.E290K 0.26 tolerated(0.45) benign(0.011) TCGA-FW-A3R5-06 10 115341719 115341719 A T HABP2 Missense_Mutation p.E308V 0.26 deleterious(0.03) benign(0.067) TCGA-FW-A3R5-06 10 115341723 115341723 G A HABP2 Silent p.R309R 0.26 TCGA-FW-A3R5-06 10 115341822 115341822 C T HABP2 Silent p.P342P 0.32 TCGA-FW-A3R5-06 10 115348223 115348223 G A HABP2 3'UTR 0.31 TCGA-FW-A3R5-06 10 115348955 115348955 C T HABP2 3'UTR 0.38 TCGA-FW-A3R5-06 10 115349528 115349528 G A NRAP Missense_Mutation p.T1662I 0.23 tolerated(0.86) benign(0.029) TCGA-FW-A3R5-06 10 115350393 115350393 C T NRAP Missense_Mutation p.D1634N 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-FW-A3R5-06 10 115371995 115371995 C T NRAP Missense_Mutation p.E1166K 0.28 deleterious(0.01) possibly_damaging(0.643) TCGA-FW-A3R5-06 10 115375563 115375563 C T NRAP Missense_Mutation p.E996K 0.31 deleterious(0.04) probably_damaging(0.942) TCGA-FW-A3R5-06 10 115391684 115391684 C A NRAP Nonsense_Mutation p.G558* 0.24 TCGA-FW-A3R5-06 10 115406706 115406706 C T NRAP Silent p.K323K 0.28 TCGA-FW-A3R5-06 10 115409800 115409800 C T NRAP Missense_Mutation p.G295D 0.15 tolerated(0.14) benign(0.03) TCGA-FW-A3R5-06 10 115412772 115412772 G A NRAP Silent p.P164P 0.25 TCGA-FW-A3R5-06 10 115526413 115526413 G A PLEKHS1 Missense_Mutation p.E48K 0.33 tolerated(0.79) benign(0.039) TCGA-FW-A3R5-06 10 115526432 115526432 C T PLEKHS1 Missense_Mutation p.S54F 0.27 deleterious(0.01) probably_damaging(0.938) TCGA-FW-A3R5-06 10 115529650 115529650 C T PLEKHS1 Silent p.L175L 0.29 TCGA-FW-A3R5-06 10 115594902 115594902 G A DCLRE1A 3'UTR 0.15 TCGA-FW-A3R5-06 10 115607039 115607039 G A DCLRE1A Silent p.A727A 0.27 TCGA-FW-A3R5-06 10 115804214 115804214 G A ADRB1 Missense_Mutation p.G108E 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 115804545 115804545 C T ADRB1 Silent p.F218F 0.17 TCGA-FW-A3R5-06 10 115804617 115804617 C T ADRB1 Silent p.F242F 0.08 TCGA-FW-A3R5-06 10 115805057 115805057 G A ADRB1 Missense_Mutation p.G389E 0.48 tolerated(0.97) benign(0.001) TCGA-FW-A3R5-06 10 115889665 115889665 G A C10orf118 Missense_Mutation p.R723C 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 115947732 115947732 C T TDRD1 Missense_Mutation p.P48S 0.23 tolerated_low_confidence(0.22) probably_damaging(0.932) TCGA-FW-A3R5-06 10 115947782 115947782 G A TDRD1 Silent p.K64K 0.27 TCGA-FW-A3R5-06 10 115963932 115963932 G A TDRD1 Missense_Mutation p.R361K 0.22 tolerated(0.8) possibly_damaging(0.87) TCGA-FW-A3R5-06 10 115964478 115964478 C T TDRD1 Intron 0.30 TCGA-FW-A3R5-06 10 115964637 115964637 G A TDRD1 Missense_Mutation p.E428K 0.27 tolerated(0.19) benign(0.035) TCGA-FW-A3R5-06 10 115973129 115973129 G A TDRD1 Nonsense_Mutation p.W619* 0.17 TCGA-FW-A3R5-06 10 115986838 115986838 G A TDRD1 Missense_Mutation p.M1061I 0.24 tolerated(0.47) benign(0.216) TCGA-FW-A3R5-06 10 116037711 116037711 G A VWA2 Missense_Mutation p.G202E 0.33 tolerated(1) benign(0) TCGA-FW-A3R5-06 10 116037787 116037787 C T VWA2 Silent p.I227I 0.10 TCGA-FW-A3R5-06 10 116045904 116045904 G A VWA2 Missense_Mutation p.D402N 0.21 tolerated(0.09) benign(0.073) TCGA-FW-A3R5-06 10 116046221 116046221 C T VWA2 Silent p.F507F 0.20 TCGA-FW-A3R5-06 10 116049258 116049258 G A VWA2 Missense_Mutation p.G711E 0.19 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 10 116049295 116049295 C T VWA2 Silent p.P723P 0.29 TCGA-FW-A3R5-06 10 116055828 116055828 C T AFAP1L2 Splice_Site p.X811_splice 0.09 TCGA-FW-A3R5-06 10 116064542 116064542 G A AFAP1L2 Missense_Mutation p.P407L 0.11 tolerated(1) probably_damaging(0.994) TCGA-FW-A3R5-06 10 116067573 116067573 C T AFAP1L2 Missense_Mutation p.E355K 0.21 tolerated(0.07) possibly_damaging(0.862) TCGA-FW-A3R5-06 10 116073723 116073723 C T AFAP1L2 Silent p.R233R 0.17 TCGA-FW-A3R5-06 10 116073768 116073768 C T AFAP1L2 Silent p.V218V 0.24 TCGA-FW-A3R5-06 10 116198974 116198974 C T ABLIM1 Missense_Mutation p.M701I 0.23 tolerated(0.07) benign(0.003) TCGA-FW-A3R5-06 10 116205144 116205144 C T ABLIM1 Missense_Mutation p.R585K 0.31 tolerated(0.19) benign(0.027) TCGA-FW-A3R5-06 10 116335236 116335236 C T ABLIM1 Missense_Mutation p.E168K 0.25 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 10 116605158 116605158 C T FAM160B1 Missense_Mutation p.S349L 0.28 tolerated(0.14) benign(0.034) TCGA-FW-A3R5-06 10 116605816 116605816 C T FAM160B1 Silent p.F391F 0.19 TCGA-FW-A3R5-06 10 116605974 116605974 C T FAM160B1 Missense_Mutation p.R416C 0.30 tolerated(0.07) benign(0.151) TCGA-FW-A3R5-06 10 116889168 116889168 G A ATRNL1 Missense_Mutation p.E234K 0.11 tolerated(0.12) benign(0.437) TCGA-FW-A3R5-06 10 116975543 116975543 G A ATRNL1 Silent p.K479K 0.29 TCGA-FW-A3R5-06 10 117221501 117221501 G A ATRNL1 Missense_Mutation p.D1125N 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 10 117278829 117278829 C T ATRNL1 Silent p.F1237F 0.18 TCGA-FW-A3R5-06 10 117308979 117308979 C T ATRNL1 Missense_Mutation p.S1243F 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 10 117884974 117884974 G A GFRA1 Silent p.T176T 0.09 TCGA-FW-A3R5-06 10 117885049 117885049 C T GFRA1 Silent p.G151G 0.25 TCGA-FW-A3R5-06 10 117885050 117885050 C T GFRA1 Missense_Mutation p.G151E 0.25 tolerated(0.89) benign(0.002) TCGA-FW-A3R5-06 10 118084493 118084493 G A CCDC172 5'UTR 0.30 TCGA-FW-A3R5-06 10 118084563 118084563 G A CCDC172 Missense_Mutation p.E14K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 118196347 118196347 C T PNLIPRP3 Silent p.L58L 0.10 TCGA-FW-A3R5-06 10 118203949 118203949 C T PNLIPRP3 Missense_Mutation p.S127L 0.38 deleterious(0.04) possibly_damaging(0.858) TCGA-FW-A3R5-06 10 118306879 118306879 C T PNLIP Silent p.P40P 0.18 TCGA-FW-A3R5-06 10 118307871 118307871 G A PNLIP Splice_Site p.X68_splice 0.28 TCGA-FW-A3R5-06 10 118310689 118310689 C T PNLIP Missense_Mutation p.S135L 0.17 tolerated(0.09) possibly_damaging(0.868) TCGA-FW-A3R5-06 10 118314941 118314941 C T PNLIP Missense_Mutation p.P245S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 118351283 118351283 G A PNLIPRP1 Missense_Mutation p.G17E 0.26 deleterious(0) possibly_damaging(0.782) TCGA-FW-A3R5-06 10 118351390 118351390 G C PNLIPRP1 Missense_Mutation p.G53R 0.10 deleterious(0.01) benign(0.033) TCGA-FW-A3R5-06 10 118357408 118357408 G A PNLIPRP1 Missense_Mutation p.D215N 0.32 tolerated(0.5) benign(0.001) TCGA-FW-A3R5-06 10 118423571 118423571 G A C10orf82 3'UTR 0.32 TCGA-FW-A3R5-06 10 118957062 118957062 C T KCNK18 Silent p.F21F 0.32 TCGA-FW-A3R5-06 10 118957063 118957063 C T KCNK18 Missense_Mutation p.P22S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 118960710 118960710 G A KCNK18 Silent p.Q88Q 0.28 TCGA-FW-A3R5-06 10 119014811 119014811 C T SLC18A2 Missense_Mutation p.L242F 0.20 deleterious(0.02) benign(0.163) TCGA-FW-A3R5-06 10 119029946 119029946 G A SLC18A2 Missense_Mutation p.R471Q 0.14 deleterious(0.02) possibly_damaging(0.474) TCGA-FW-A3R5-06 10 11911485 11911485 C T PROSER2 Intron 0.30 TCGA-FW-A3R5-06 10 11911536 11911536 C T PROSER2 Missense_Mutation p.P147S 0.27 tolerated(1) benign(0.022) TCGA-FW-A3R5-06 10 11911718 11911718 G A PROSER2 Silent p.G207G 0.44 TCGA-FW-A3R5-06 10 11911750 11911750 G A PROSER2 Missense_Mutation p.R218K 0.30 tolerated(1) benign(0.012) TCGA-FW-A3R5-06 10 11978629 11978629 G A UPF2 Missense_Mutation p.P1154L 0.38 tolerated(0.28) benign(0.106) TCGA-FW-A3R5-06 10 120354453 120354453 G A PRLHR Silent p.L102L 0.33 TCGA-FW-A3R5-06 10 120795706 120795706 G A EIF3A Missense_Mutation p.P1332S 0.15 tolerated_low_confidence(0.14) unknown(0) TCGA-FW-A3R5-06 10 120801536 120801536 G A EIF3A Missense_Mutation p.P1166S 0.24 tolerated_low_confidence(0.13) possibly_damaging(0.641) TCGA-FW-A3R5-06 10 120802039 120802039 G A EIF3A Missense_Mutation p.P998L 0.08 deleterious(0.01) benign(0.312) TCGA-FW-A3R5-06 10 120809324 120809324 G A EIF3A Missense_Mutation p.L883F 0.27 tolerated(0.77) probably_damaging(0.986) TCGA-FW-A3R5-06 10 120817749 120817749 G A EIF3A Nonsense_Mutation p.Q566* 0.25 TCGA-FW-A3R5-06 10 120824973 120824973 G A EIF3A Missense_Mutation p.R354C 0.22 deleterious(0) unknown(0) TCGA-FW-A3R5-06 10 121189921 121189921 C T GRK5 Nonsense_Mutation p.R190* 0.30 TCGA-FW-A3R5-06 10 121335004 121335004 G A TIAL1 3'UTR 0.46 TCGA-FW-A3R5-06 10 121336989 121336989 G A TIAL1 Silent p.F254F 0.34 TCGA-FW-A3R5-06 10 121337200 121337200 G A TIAL1 Missense_Mutation p.P219L 0.28 deleterious(0.03) benign(0.007) TCGA-FW-A3R5-06 10 121652342 121652342 C T SEC23IP Silent p.S16S 0.20 TCGA-FW-A3R5-06 10 122626202 122626202 C T WDR11 Silent p.A372A 0.30 TCGA-FW-A3R5-06 10 122664263 122664263 C T WDR11 Missense_Mutation p.P1045S 0.24 tolerated(0.15) benign(0.05) TCGA-FW-A3R5-06 10 122664264 122664264 C T WDR11 Missense_Mutation p.P1045L 0.33 deleterious(0.02) benign(0.038) TCGA-FW-A3R5-06 10 12279228 12279228 C T CDC123 Silent p.F217F 0.29 TCGA-FW-A3R5-06 10 1230951 1230951 C T ADARB2 Silent p.P631P 0.15 TCGA-FW-A3R5-06 10 123239279 123239279 G A FGFR2 3'Flank 0.30 TCGA-FW-A3R5-06 10 123239513 123239513 G A FGFR2 Missense_Mutation p.P776L 0.31 deleterious(0) benign(0.017) TCGA-FW-A3R5-06 10 123244952 123244952 C T FGFR2 Missense_Mutation p.E719K 0.28 deleterious(0.02) benign(0.109) TCGA-FW-A3R5-06 10 123256123 123256123 C T FGFR2 Missense_Mutation p.E597K 0.29 tolerated(0.11) benign(0.255) TCGA-FW-A3R5-06 10 123279501 123279501 C T FGFR2 Missense_Mutation p.V311I 0.33 tolerated(0.19) possibly_damaging(0.652) TCGA-FW-A3R5-06 10 123298188 123298188 G A FGFR2 Silent p.V222V 0.10 TCGA-FW-A3R5-06 10 123629551 123629551 G A ATE1 Silent p.F315F 0.32 TCGA-FW-A3R5-06 10 123730536 123730536 G A NSMCE4A Missense_Mutation p.A140V 0.28 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 10 123842272 123842272 G A TACC2 Missense_Mutation p.G86E 0.26 benign(0.001) TCGA-FW-A3R5-06 10 123842627 123842627 C T TACC2 Silent p.P204P 0.08 TCGA-FW-A3R5-06 10 123843062 123843062 C T TACC2 Silent p.G349G 0.25 TCGA-FW-A3R5-06 10 123844591 123844591 C T TACC2 Missense_Mutation p.S859F 0.32 benign(0.002) TCGA-FW-A3R5-06 10 123845774 123845774 G A TACC2 Silent p.V1253V 0.10 TCGA-FW-A3R5-06 10 123846092 123846092 G A TACC2 Silent p.G1359G 0.35 TCGA-FW-A3R5-06 10 123970966 123970966 G A TACC2 Nonsense_Mutation p.W2342* 0.31 TCGA-FW-A3R5-06 10 123971140 123971140 C T TACC2 Silent p.I2400I 0.21 TCGA-FW-A3R5-06 10 123971151 123971151 C T TACC2 Missense_Mutation p.A2404V 0.21 possibly_damaging(0.573) TCGA-FW-A3R5-06 10 123971180 123971180 G A TACC2 Missense_Mutation p.G2414R 0.19 probably_damaging(0.98) TCGA-FW-A3R5-06 10 123987394 123987394 G A TACC2 Silent p.A2589A 0.33 TCGA-FW-A3R5-06 10 123989933 123989933 C T TACC2 Missense_Mutation p.S2702F 0.31 probably_damaging(0.927) TCGA-FW-A3R5-06 10 124034596 124034596 C T BTBD16 5'UTR 0.28 TCGA-FW-A3R5-06 10 124045712 124045712 C T BTBD16 Silent p.L112L 0.31 TCGA-FW-A3R5-06 10 124045738 124045738 G C BTBD16 Silent p.L120L 0.27 TCGA-FW-A3R5-06 10 124050683 124050683 C T BTBD16 Silent p.I188I 0.25 TCGA-FW-A3R5-06 10 124189150 124189150 C T PLEKHA1 Missense_Mutation p.P304L 0.22 tolerated(0.1) benign(0.004) TCGA-FW-A3R5-06 10 124248484 124248484 C T HTRA1 Missense_Mutation p.A180V 0.24 deleterious(0.02) possibly_damaging(0.451) TCGA-FW-A3R5-06 10 124266334 124266334 G A HTRA1 Missense_Mutation p.R302Q 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 124330411 124330411 C T DMBT1 Missense_Mutation p.P49S 0.31 tolerated_low_confidence(0.12) benign(0.006) TCGA-FW-A3R5-06 10 124345586 124345586 C T DMBT1 Silent p.S490S 0.27 TCGA-FW-A3R5-06 10 124345685 124345685 G A DMBT1 Nonsense_Mutation p.W523* 0.29 TCGA-FW-A3R5-06 10 124348598 124348598 G A DMBT1 Missense_Mutation p.R641K 0.08 deleterious(0.02) unknown(0) TCGA-FW-A3R5-06 10 124352006 124352006 G A DMBT1 Missense_Mutation p.D799N 0.10 tolerated(0.28) unknown(0) TCGA-FW-A3R5-06 10 124358351 124358351 G A DMBT1 Silent p.V1006V 0.24 TCGA-FW-A3R5-06 10 124377772 124377772 G A DMBT1 Missense_Mutation p.E1582K 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 124380660 124380660 G A DMBT1 Missense_Mutation p.G1662E 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 124389907 124389907 A G DMBT1 Missense_Mutation p.I1847V 0.32 tolerated(0.3) probably_damaging(0.927) TCGA-FW-A3R5-06 10 124390561 124390561 G A DMBT1 Missense_Mutation p.G1908E 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 124390562 124390562 G A DMBT1 Silent p.G1908G 0.29 TCGA-FW-A3R5-06 10 124392769 124392769 C T DMBT1 Missense_Mutation p.P2025S 0.26 deleterious(0) possibly_damaging(0.85) TCGA-FW-A3R5-06 10 124395538 124395538 G A DMBT1 Missense_Mutation p.E2065K 0.27 deleterious(0.01) possibly_damaging(0.748) TCGA-FW-A3R5-06 10 124399574 124399574 G A DMBT1 Missense_Mutation p.D2192N 0.32 tolerated(0.45) benign(0.023) TCGA-FW-A3R5-06 10 124402853 124402853 A G DMBT1 Missense_Mutation p.D2394G 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-FW-A3R5-06 10 124402857 124402857 C T DMBT1 Silent p.V2395V 0.16 TCGA-FW-A3R5-06 10 124459232 124459232 C T C10orf120 Silent p.R25R 0.26 TCGA-FW-A3R5-06 10 124459274 124459274 C T C10orf120 Silent p.R11R 0.24 TCGA-FW-A3R5-06 10 124591827 124591827 T C CUZD1 Silent p.A597A 0.09 TCGA-FW-A3R5-06 10 124593205 124593205 C T CUZD1 Missense_Mutation p.S545N 0.27 tolerated(0.31) benign(0.003) TCGA-FW-A3R5-06 10 124594501 124594501 C T CUZD1 Missense_Mutation p.G368E 0.19 tolerated(1) benign(0) TCGA-FW-A3R5-06 10 124594553 124594553 C T CUZD1 Missense_Mutation p.E351K 0.30 tolerated(0.75) benign(0.186) TCGA-FW-A3R5-06 10 124596525 124596525 G A CUZD1 Silent p.A213A 0.27 TCGA-FW-A3R5-06 10 124608753 124608753 C T CUZD1 Intron 0.27 TCGA-FW-A3R5-06 10 124692119 124692119 G A C10orf88 Silent p.L388L 0.17 TCGA-FW-A3R5-06 10 124713750 124713750 A T C10orf88 5'UTR 0.33 TCGA-FW-A3R5-06 10 124755623 124755623 C T IKZF5 Missense_Mutation p.G68E 0.28 tolerated(0.73) benign(0.018) TCGA-FW-A3R5-06 10 124793927 124793927 C T ACADSB Missense_Mutation p.S33L 0.07 tolerated(0.9) benign(0) TCGA-FW-A3R5-06 10 124802595 124802595 C T ACADSB Missense_Mutation p.R239C 0.28 deleterious(0) possibly_damaging(0.895) TCGA-FW-A3R5-06 10 125516860 125516860 C T CPXM2 Missense_Mutation p.D596N 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 125528104 125528104 C T CPXM2 Missense_Mutation p.E413K 0.33 deleterious(0.02) possibly_damaging(0.699) TCGA-FW-A3R5-06 10 125769590 125769590 C T CHST15 3'UTR 0.20 TCGA-FW-A3R5-06 10 125769852 125769852 G A CHST15 Missense_Mutation p.P500L 0.56 deleterious(0) possibly_damaging(0.783) TCGA-FW-A3R5-06 10 125805234 125805234 G A CHST15 Silent p.F165F 0.27 TCGA-FW-A3R5-06 10 125805353 125805353 C T CHST15 Missense_Mutation p.E126K 0.30 tolerated(0.31) benign(0.234) TCGA-FW-A3R5-06 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.10 tolerated(0.27) benign(0.011) TCGA-FW-A3R5-06 10 12595318 12595318 G A CAMK1D Missense_Mutation p.E63K 0.27 tolerated(0.05) benign(0.063) TCGA-FW-A3R5-06 10 126092381 126092381 A G OAT Missense_Mutation p.C253R 0.27 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 10 126370409 126370409 G A FAM53B Silent p.L225L 0.30 TCGA-FW-A3R5-06 10 126715450 126715450 G A CTBP2 Silent p.F293F 0.09 TCGA-FW-A3R5-06 10 126715662 126715662 G A CTBP2 Missense_Mutation p.P223S 0.26 tolerated_low_confidence(0.39) benign(0.001) TCGA-FW-A3R5-06 10 127409777 127409777 C T EDRF1 Missense_Mutation p.S38L 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 10 127668815 127668815 G A FANK1 Silent p.K33K 0.40 TCGA-FW-A3R5-06 10 127967522 127967522 C T ADAM12 Silent p.R74R 0.14 TCGA-FW-A3R5-06 10 12867821 12867821 G A CAMK1D Intron 0.32 TCGA-FW-A3R5-06 10 128829926 128829926 C T DOCK1 Missense_Mutation p.S525F 0.29 deleterious(0) possibly_damaging(0.573) TCGA-FW-A3R5-06 10 129209148 129209148 C T DOCK1 Missense_Mutation p.P1442L 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-FW-A3R5-06 10 129231625 129231625 C T DOCK1 Missense_Mutation p.P1644S 0.37 tolerated(0.93) possibly_damaging(0.857) TCGA-FW-A3R5-06 10 129347818 129347818 C T NPS Missense_Mutation p.P25L 0.23 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 10 129350866 129350866 G A NPS Missense_Mutation p.G78E 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 129536850 129536850 G A FOXI2 Missense_Mutation p.R193K 0.27 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 10 129536979 129536979 C T FOXI2 Missense_Mutation p.P236L 0.19 tolerated(0.06) benign(0.003) TCGA-FW-A3R5-06 10 129681992 129681992 G A CLRN3 Missense_Mutation p.P126L 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 129682033 129682033 G A CLRN3 Silent p.F112F 0.32 TCGA-FW-A3R5-06 10 129847804 129847804 G A PTPRE Silent p.R98R 0.26 TCGA-FW-A3R5-06 10 129875931 129875931 C T PTPRE Silent p.F592F 0.11 TCGA-FW-A3R5-06 10 129901135 129901135 G A MKI67 Missense_Mutation p.S2990F 0.31 tolerated(0.49) probably_damaging(0.928) TCGA-FW-A3R5-06 10 129902393 129902393 G A MKI67 Missense_Mutation p.H2571Y 0.21 tolerated(0.35) benign(0.057) TCGA-FW-A3R5-06 10 129905716 129905716 G A MKI67 Missense_Mutation p.P1463L 0.20 deleterious(0.02) benign(0.065) TCGA-FW-A3R5-06 10 129906709 129906709 G A MKI67 Missense_Mutation p.P1132L 0.28 tolerated(0.08) benign(0.15) TCGA-FW-A3R5-06 10 129913387 129913387 C T MKI67 Missense_Mutation p.D429N 0.28 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 10 129921147 129921147 G A MKI67 Silent p.F95F 0.14 TCGA-FW-A3R5-06 10 131666102 131666102 C T EBF3 Missense_Mutation p.D277N 0.47 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 10 131671830 131671830 C T EBF3 Missense_Mutation p.G223S 0.24 deleterious(0.02) probably_damaging(0.916) TCGA-FW-A3R5-06 10 131755565 131755565 C T EBF3 Missense_Mutation p.G171S 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 10 13251216 13251216 C T MCM10 Intron 0.27 TCGA-FW-A3R5-06 10 133058644 133058644 G A TCERG1L Missense_Mutation p.A245V 0.39 deleterious(0.01) benign(0.421) TCGA-FW-A3R5-06 10 13325819 13325819 G A PHYH Silent p.F233F 0.08 TCGA-FW-A3R5-06 10 133953998 133953998 C T JAKMIP3 Missense_Mutation p.S463F 0.23 tolerated(0.06) benign(0.005) TCGA-FW-A3R5-06 10 134188770 134188770 G A LRRC27 3'UTR 0.24 TCGA-FW-A3R5-06 10 134218356 134218356 C T PWWP2B Missense_Mutation p.P118S 0.45 deleterious(0) benign(0.137) TCGA-FW-A3R5-06 10 134261597 134261597 G A C10orf91 3'UTR 0.27 TCGA-FW-A3R5-06 10 134579348 134579348 C T INPP5A Silent p.P325P 0.23 TCGA-FW-A3R5-06 10 134621897 134621897 G A TTC40 3'UTR 0.26 TCGA-FW-A3R5-06 10 134627674 134627674 C T TTC40 Missense_Mutation p.G2457E 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 134627736 134627736 G A TTC40 Silent p.I2436I 0.36 TCGA-FW-A3R5-06 10 134886335 134886335 C T GPR123 Silent p.F123F 0.32 TCGA-FW-A3R5-06 10 134896036 134896036 C T GPR123-AS1 3'Flank 0.28 TCGA-FW-A3R5-06 10 134896090 134896090 G A GPR123-AS1 3'Flank 0.18 TCGA-FW-A3R5-06 10 134896158 134896158 C T GPR123-AS1 3'Flank 0.28 TCGA-FW-A3R5-06 10 134916263 134916263 G A GPR123 Silent p.R106R 0.12 TCGA-FW-A3R5-06 10 134973999 134973999 G A KNDC1 Missense_Mutation p.D10N 0.28 tolerated(0.34) benign(0.01) TCGA-FW-A3R5-06 10 134980930 134980930 C T KNDC1 Missense_Mutation p.L50F 0.27 deleterious(0.02) benign(0.001) TCGA-FW-A3R5-06 10 135003268 135003268 C T KNDC1 Missense_Mutation p.S509L 0.29 tolerated(0.11) benign(0.084) TCGA-FW-A3R5-06 10 135015029 135015029 G A KNDC1 Missense_Mutation p.R1005K 0.30 tolerated(0.96) benign(0.179) TCGA-FW-A3R5-06 10 135086808 135086808 C T ADAM8 Missense_Mutation p.G175S 0.33 tolerated(0.15) benign(0.089) TCGA-FW-A3R5-06 10 135193892 135193892 G A PAOX Missense_Mutation p.E191K 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 135197711 135197711 C T PAOX Silent p.A372A 0.30 TCGA-FW-A3R5-06 10 135346307 135346307 C T CYP2E1 Missense_Mutation p.H254Y 0.27 deleterious(0.05) benign(0) TCGA-FW-A3R5-06 10 135347379 135347379 C T CYP2E1 Silent p.L315L 0.31 TCGA-FW-A3R5-06 10 13534810 13534810 C T BEND7 Missense_Mutation p.R161Q 0.20 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-FW-A3R5-06 10 135369385 135369385 C T SYCE1 Silent p.L206L 0.36 TCGA-FW-A3R5-06 10 13538855 13538855 G A BEND7 Missense_Mutation p.S109L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-FW-A3R5-06 10 1421334 1421334 G A ADARB2 Missense_Mutation p.T41I 0.27 deleterious(0) benign(0.398) TCGA-FW-A3R5-06 10 14950960 14950960 G A DCLRE1C Missense_Mutation p.S509F 0.27 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-FW-A3R5-06 10 14996092 14996092 A C DCLRE1C 5'Flank 0.50 TCGA-FW-A3R5-06 10 15107640 15107640 C T OLAH Missense_Mutation p.H207Y 0.23 tolerated(1) benign(0.03) TCGA-FW-A3R5-06 10 15113846 15113846 G A OLAH Missense_Mutation p.G262R 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 15115135 15115135 G A OLAH Silent p.G288G 0.31 TCGA-FW-A3R5-06 10 15255006 15255006 C T FAM171A1 Missense_Mutation p.E861K 0.26 tolerated(0.12) benign(0.43) TCGA-FW-A3R5-06 10 15255045 15255045 C T FAM171A1 Missense_Mutation p.A848T 0.34 tolerated(0.6) benign(0.02) TCGA-FW-A3R5-06 10 15255485 15255485 G A FAM171A1 Missense_Mutation p.P701L 0.25 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 10 15255505 15255505 C T FAM171A1 Missense_Mutation p.M694I 0.27 deleterious(0.05) benign(0.069) TCGA-FW-A3R5-06 10 15255615 15255615 G A FAM171A1 Missense_Mutation p.P658S 0.21 tolerated(0.69) benign(0.009) TCGA-FW-A3R5-06 10 15255668 15255668 G A FAM171A1 Missense_Mutation p.S640F 0.22 deleterious(0.03) possibly_damaging(0.639) TCGA-FW-A3R5-06 10 15255810 15255810 C T FAM171A1 Missense_Mutation p.D593N 0.49 deleterious(0.01) possibly_damaging(0.734) TCGA-FW-A3R5-06 10 15256006 15256006 C T FAM171A1 Silent p.E527E 0.11 TCGA-FW-A3R5-06 10 15256171 15256171 C T FAM171A1 Missense_Mutation p.M472I 0.33 tolerated(0.56) benign(0.001) TCGA-FW-A3R5-06 10 15256254 15256254 C T FAM171A1 Missense_Mutation p.D445N 0.30 tolerated(0.12) possibly_damaging(0.715) TCGA-FW-A3R5-06 10 15290645 15290645 C T FAM171A1 Silent p.Q249Q 0.27 TCGA-FW-A3R5-06 10 15290705 15290705 G A FAM171A1 Silent p.P229P 0.22 TCGA-FW-A3R5-06 10 15326031 15326031 G A FAM171A1 Silent p.F57F 0.31 TCGA-FW-A3R5-06 10 15600105 15600105 C T ITGA8 Missense_Mutation p.E912K 0.25 tolerated(0.1) benign(0.117) TCGA-FW-A3R5-06 10 15600127 15600127 C T ITGA8 Silent p.R904R 0.26 TCGA-FW-A3R5-06 10 15614330 15614330 G A ITGA8 Silent p.I839I 0.29 TCGA-FW-A3R5-06 10 15646221 15646221 C T ITGA8 Missense_Mutation p.E702K 0.31 tolerated(0.59) possibly_damaging(0.514) TCGA-FW-A3R5-06 10 15646222 15646222 G A ITGA8 Silent p.I701I 0.27 TCGA-FW-A3R5-06 10 15646284 15646284 C T ITGA8 Missense_Mutation p.E681K 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 15686188 15686188 C T ITGA8 Missense_Mutation p.D414N 0.39 tolerated(0.12) benign(0.062) TCGA-FW-A3R5-06 10 15688901 15688901 C T ITGA8 Missense_Mutation p.G384E 0.22 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 10 15688980 15688980 C T ITGA8 Missense_Mutation p.G358R 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 15713626 15713626 C T ITGA8 Missense_Mutation p.E275K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 15729966 15729966 T A ITGA8 Missense_Mutation p.T139S 0.13 tolerated(0.53) benign(0.038) TCGA-FW-A3R5-06 10 15828640 15828640 G A FAM188A Missense_Mutation p.L346F 0.16 tolerated(0.08) benign(0.024) TCGA-FW-A3R5-06 10 16878310 16878310 C T CUBN Missense_Mutation p.M3368I 0.35 tolerated(0.3) benign(0.039) TCGA-FW-A3R5-06 10 16878368 16878368 G A CUBN Missense_Mutation p.S3349L 0.25 tolerated(0.86) benign(0.008) TCGA-FW-A3R5-06 10 16882980 16882980 G A CUBN Missense_Mutation p.P3244S 0.27 tolerated(0.12) probably_damaging(0.951) TCGA-FW-A3R5-06 10 16955966 16955966 A T CUBN Silent p.S2459S 0.27 TCGA-FW-A3R5-06 10 16955967 16955967 G A CUBN Missense_Mutation p.S2459F 0.27 deleterious(0.01) benign(0) TCGA-FW-A3R5-06 10 16967672 16967672 G A CUBN Nonsense_Mutation p.Q2125* 0.29 TCGA-FW-A3R5-06 10 16992006 16992006 G A CUBN Missense_Mutation p.L1692F 0.18 tolerated(0.17) possibly_damaging(0.831) TCGA-FW-A3R5-06 10 17171809 17171809 C T CUBN 5'UTR 0.27 TCGA-FW-A3R5-06 10 17369021 17369021 G A ST8SIA6 Silent p.F209F 0.37 TCGA-FW-A3R5-06 10 17730032 17730032 C T STAM Missense_Mutation p.P102S 0.25 deleterious(0.02) possibly_damaging(0.668) TCGA-FW-A3R5-06 10 1779380 1779380 C T ADARB2 5'UTR 0.30 TCGA-FW-A3R5-06 10 18242145 18242145 C T SLC39A12 5'UTR 0.33 TCGA-FW-A3R5-06 10 18250623 18250623 G C SLC39A12 Missense_Mutation p.Q125H 0.27 tolerated(0.33) benign(0.046) TCGA-FW-A3R5-06 10 18276413 18276413 G A SLC39A12 Missense_Mutation p.G368S 0.33 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 10 18629727 18629727 G A CACNB2 Intron 0.22 TCGA-FW-A3R5-06 10 18828563 18828563 G A CACNB2 Silent p.K631K 0.09 TCGA-FW-A3R5-06 10 18964126 18964126 C T ARL5B Missense_Mutation p.S174F 0.11 deleterious(0) possibly_damaging(0.821) TCGA-FW-A3R5-06 10 20432301 20432301 G A PLXDC2 Missense_Mutation p.D207N 0.30 tolerated(0.44) probably_damaging(0.995) TCGA-FW-A3R5-06 10 20466293 20466293 C T PLXDC2 Missense_Mutation p.S339F 0.27 deleterious(0) possibly_damaging(0.812) TCGA-FW-A3R5-06 10 20534356 20534356 C T PLXDC2 Silent p.L465L 0.28 TCGA-FW-A3R5-06 10 21074807 21074807 C T NEBL Missense_Mutation p.E972K 0.48 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 21102957 21102957 C T NEBL Missense_Mutation p.D753N 0.19 tolerated(0.26) possibly_damaging(0.861) TCGA-FW-A3R5-06 10 21108367 21108367 C T NEBL Missense_Mutation p.E681K 0.35 tolerated(0.18) possibly_damaging(0.724) TCGA-FW-A3R5-06 10 21120147 21120147 C T NEBL Missense_Mutation p.R550K 0.16 tolerated(0.2) benign(0.074) TCGA-FW-A3R5-06 10 21120193 21120193 C T NEBL Missense_Mutation p.G535R 0.07 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 10 21120489 21120489 C T NEBL Silent p.E491E 0.34 TCGA-FW-A3R5-06 10 21157616 21157616 C T NEBL Missense_Mutation p.E221K 0.10 tolerated(0.34) benign(0.077) TCGA-FW-A3R5-06 10 21158759 21158759 C T NEBL Silent p.R164R 0.18 TCGA-FW-A3R5-06 10 21178778 21178778 G A NEBL Missense_Mutation p.S85F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 21186092 21186092 C T NEBL Missense_Mutation p.E15K 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.784) TCGA-FW-A3R5-06 10 21414770 21414770 C T C10orf113 Silent p.L150L 0.23 TCGA-FW-A3R5-06 10 21414830 21414830 C T C10orf113 Silent p.G130G 0.31 TCGA-FW-A3R5-06 10 22048148 22048148 G A DNAJC1 Missense_Mutation p.S516F 0.21 deleterious(0) possibly_damaging(0.683) TCGA-FW-A3R5-06 10 22616968 22616968 G A BMI1 Missense_Mutation p.E136K 0.26 deleterious(0.02) benign(0.41) TCGA-FW-A3R5-06 10 22675776 22675776 C T SPAG6 Missense_Mutation p.S189L 0.15 tolerated(0.05) benign(0.117) TCGA-FW-A3R5-06 10 22676877 22676877 G A SPAG6 Silent p.K268K 0.31 TCGA-FW-A3R5-06 10 22700095 22700095 G A SPAG6 Missense_Mutation p.E484K 0.27 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 10 22705588 22705588 G A SPAG6 Missense_Mutation p.V501M 0.26 tolerated(0.1) benign(0.015) TCGA-FW-A3R5-06 10 22839618 22839618 G A PIP4K2A Silent p.V254V 0.13 TCGA-FW-A3R5-06 10 23250889 23250889 C T ARMC3 Missense_Mutation p.P205L 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 23482809 23482809 G A PTF1A Missense_Mutation p.E321K 0.21 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 10 24669876 24669876 G A KIAA1217 Missense_Mutation p.A145T 0.21 tolerated(0.07) benign(0.207) TCGA-FW-A3R5-06 10 24762606 24762606 G A KIAA1217 Silent p.A432A 0.23 TCGA-FW-A3R5-06 10 24762729 24762729 C T KIAA1217 Silent p.A473A 0.30 TCGA-FW-A3R5-06 10 24762896 24762896 G A KIAA1217 Missense_Mutation p.G529E 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 24813411 24813411 G A KIAA1217 Silent p.A872A 0.27 TCGA-FW-A3R5-06 10 24822131 24822131 G A KIAA1217 Missense_Mutation p.E1127K 0.18 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 24832642 24832642 G A KIAA1217 Silent p.E1481E 0.11 TCGA-FW-A3R5-06 10 24832666 24832666 G A KIAA1217 Silent p.G1489G 0.27 TCGA-FW-A3R5-06 10 24833228 24833228 G A KIAA1217 Missense_Mutation p.E1677K 0.30 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 24833351 24833351 C T KIAA1217 Missense_Mutation p.P1718S 0.40 tolerated(0.19) benign(0.301) TCGA-FW-A3R5-06 10 24833950 24833950 C T KIAA1217 Missense_Mutation p.P1751L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 24834974 24834974 C T KIAA1217 Silent p.A1851A 0.17 TCGA-FW-A3R5-06 10 24835007 24835007 G A KIAA1217 Silent p.L1862L 0.31 TCGA-FW-A3R5-06 10 24835206 24835206 G A KIAA1217 Missense_Mutation p.G1929R 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 24873522 24873522 G A ARHGAP21 Missense_Mutation p.S1899F 0.30 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 10 24884069 24884069 G A ARHGAP21 Missense_Mutation p.R1255C 0.26 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 10 24959159 24959159 T A ARHGAP21 Missense_Mutation p.Q77H 0.34 tolerated(1) benign(0.016) TCGA-FW-A3R5-06 10 25160960 25160960 G A PRTFDC1 Silent p.I124I 0.32 TCGA-FW-A3R5-06 10 25226182 25226182 C T PRTFDC1 Silent p.K90K 0.29 TCGA-FW-A3R5-06 10 25273813 25273813 C T ENKUR Missense_Mutation p.E206K 0.28 tolerated(0.11) benign(0.033) TCGA-FW-A3R5-06 10 25279504 25279504 C T ENKUR Missense_Mutation p.R161Q 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 10 25279520 25279520 C T ENKUR Missense_Mutation p.E156K 0.09 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 10 25312259 25312259 C T THNSL1 Missense_Mutation p.T36I 0.26 tolerated_low_confidence(0.21) benign(0.004) TCGA-FW-A3R5-06 10 25313252 25313252 C T THNSL1 Missense_Mutation p.P367L 0.23 deleterious(0.02) benign(0.172) TCGA-FW-A3R5-06 10 25684929 25684929 G A GPR158 Silent p.V366V 0.25 TCGA-FW-A3R5-06 10 25684939 25684939 C T GPR158 Missense_Mutation p.R370W 0.24 deleterious(0.01) benign(0.093) TCGA-FW-A3R5-06 10 25839905 25839905 G A GPR158 Missense_Mutation p.V469I 0.25 deleterious(0.03) possibly_damaging(0.893) TCGA-FW-A3R5-06 10 25861613 25861613 G A GPR158 Missense_Mutation p.R517Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 10 25885707 25885707 G A GPR158 Missense_Mutation p.E712K 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-FW-A3R5-06 10 25886970 25886970 G A GPR158 Silent p.E805E 0.26 TCGA-FW-A3R5-06 10 25887578 25887578 C T GPR158 Missense_Mutation p.P1008L 0.36 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 10 25888232 25888232 G A GPR158 3'UTR 0.30 TCGA-FW-A3R5-06 10 25888266 25888266 G A GPR158 3'UTR 0.27 TCGA-FW-A3R5-06 10 26241088 26241088 C T MYO3A Missense_Mutation p.P17S 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 26312975 26312975 G A MYO3A Silent p.Q252Q 0.29 TCGA-FW-A3R5-06 10 26414504 26414504 T A MYO3A Missense_Mutation p.I694N 0.09 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 26434399 26434399 C T MYO3A Missense_Mutation p.S814L 0.18 deleterious(0.01) possibly_damaging(0.716) TCGA-FW-A3R5-06 10 26446395 26446395 C T MYO3A Nonsense_Mutation p.R984* 0.28 TCGA-FW-A3R5-06 10 26462936 26462936 G A MYO3A Missense_Mutation p.R1248K 0.18 tolerated_low_confidence(0.85) benign(0.001) TCGA-FW-A3R5-06 10 26463032 26463032 C T MYO3A Missense_Mutation p.S1280F 0.27 deleterious_low_confidence(0.02) benign(0.01) TCGA-FW-A3R5-06 10 26465770 26465770 C T MYO3A Silent p.L1478L 0.21 TCGA-FW-A3R5-06 10 26482151 26482151 G A MYO3A Missense_Mutation p.E1486K 0.27 deleterious_low_confidence(0.05) benign(0.14) TCGA-FW-A3R5-06 10 26589954 26589954 G A GAD2 3'UTR 0.36 TCGA-FW-A3R5-06 10 26781309 26781309 G A APBB1IP Silent p.E18E 0.30 TCGA-FW-A3R5-06 10 26802488 26802488 G A APBB1IP Missense_Mutation p.E238K 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 26802553 26802553 G A APBB1IP Silent p.E259E 0.26 TCGA-FW-A3R5-06 10 26822398 26822398 G A APBB1IP Missense_Mutation p.E282K 0.14 tolerated(0.08) benign(0.115) TCGA-FW-A3R5-06 10 26849116 26849116 G A APBB1IP Missense_Mutation p.G413E 0.17 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 26994270 26994270 C T PDSS1 Missense_Mutation p.P95S 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 27375502 27375502 C T ANKRD26 Silent p.R225R 0.24 TCGA-FW-A3R5-06 10 27411786 27411786 G A YME1L1 Missense_Mutation p.L464F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 27499923 27499923 G A ACBD5 Missense_Mutation p.R342C 0.28 tolerated(0.15) benign(0) TCGA-FW-A3R5-06 10 27537457 27537457 C T RP11-85G18.6 Intron 0.21 TCGA-FW-A3R5-06 10 27552006 27552006 G A ARMC4P1 RNA 0.33 TCGA-FW-A3R5-06 10 27577691 27577691 G A ARMC4P1 RNA 0.12 TCGA-FW-A3R5-06 10 27687295 27687295 G A PTCHD3 Silent p.I744I 0.27 TCGA-FW-A3R5-06 10 27692272 27692272 C T PTCHD3 Missense_Mutation p.R409Q 0.38 tolerated(0.18) possibly_damaging(0.476) TCGA-FW-A3R5-06 10 27702757 27702757 G A PTCHD3 Silent p.F141F 0.26 TCGA-FW-A3R5-06 10 27703020 27703020 G A PTCHD3 Missense_Mutation p.P54S 0.30 tolerated_low_confidence(0.16) possibly_damaging(0.803) TCGA-FW-A3R5-06 10 27703021 27703021 G A PTCHD3 Silent p.S53S 0.30 TCGA-FW-A3R5-06 10 28024255 28024255 G A MKX Nonsense_Mutation p.R133* 0.33 TCGA-FW-A3R5-06 10 28101306 28101306 T C ARMC4 3'UTR 0.33 TCGA-FW-A3R5-06 10 28101323 28101323 C T ARMC4 3'UTR 0.53 TCGA-FW-A3R5-06 10 28149675 28149675 G A ARMC4 Missense_Mutation p.P967L 0.29 deleterious(0.01) possibly_damaging(0.861) TCGA-FW-A3R5-06 10 28229561 28229561 C T ARMC4 Silent p.R639R 0.28 TCGA-FW-A3R5-06 10 28229733 28229733 A G ARMC4 Missense_Mutation p.V582A 0.32 deleterious(0.03) possibly_damaging(0.905) TCGA-FW-A3R5-06 10 28233854 28233854 G A ARMC4 Missense_Mutation p.S475L 0.34 tolerated(0.11) benign(0.02) TCGA-FW-A3R5-06 10 28260212 28260212 C T ARMC4 Missense_Mutation p.E323K 0.28 tolerated(0.35) benign(0.001) TCGA-FW-A3R5-06 10 28272835 28272835 C T ARMC4 Silent p.V252V 0.32 TCGA-FW-A3R5-06 10 28273125 28273125 C T ARMC4 Missense_Mutation p.E224K 0.31 tolerated(0.09) benign(0.003) TCGA-FW-A3R5-06 10 28273189 28273189 C T ARMC4 Silent p.K202K 0.31 TCGA-FW-A3R5-06 10 28273976 28273976 G A ARMC4 Missense_Mutation p.L183F 0.16 deleterious(0) probably_damaging(0.917) TCGA-FW-A3R5-06 10 28284008 28284008 C T ARMC4 Missense_Mutation p.E22K 0.25 tolerated(0.05) possibly_damaging(0.691) TCGA-FW-A3R5-06 10 28343065 28343065 C T MPP7 Missense_Mutation p.E554K 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 10 28348673 28348673 C T MPP7 Splice_Site p.X402_splice 0.23 TCGA-FW-A3R5-06 10 28378638 28378638 C T MPP7 Missense_Mutation p.R362Q 0.25 tolerated(0.27) benign(0.11) TCGA-FW-A3R5-06 10 28409123 28409123 C T MPP7 Missense_Mutation p.R296K 0.17 tolerated(0.06) possibly_damaging(0.559) TCGA-FW-A3R5-06 10 29580895 29580895 G A LYZL1 Silent p.R79R 0.44 TCGA-FW-A3R5-06 10 29782300 29782300 C T SVIL Missense_Mutation p.V1288M 0.32 deleterious(0) possibly_damaging(0.708) TCGA-FW-A3R5-06 10 29821054 29821054 C T SVIL Missense_Mutation p.G629D 0.29 tolerated(0.27) benign(0.04) TCGA-FW-A3R5-06 10 29840139 29840139 G A SVIL Nonsense_Mutation p.R72* 0.32 TCGA-FW-A3R5-06 10 29891190 29891190 C T SVIL Intron 0.17 TCGA-FW-A3R5-06 10 30316036 30316036 G A KIAA1462 Missense_Mutation p.P1014L 0.32 tolerated(0.86) benign(0.006) TCGA-FW-A3R5-06 10 30316279 30316279 C T KIAA1462 Missense_Mutation p.G933D 0.12 tolerated(0.06) benign(0.178) TCGA-FW-A3R5-06 10 30316938 30316938 C T KIAA1462 Silent p.P713P 0.26 TCGA-FW-A3R5-06 10 30316985 30316985 C T KIAA1462 Missense_Mutation p.E698K 0.23 deleterious(0.01) possibly_damaging(0.888) TCGA-FW-A3R5-06 10 30317513 30317513 C T KIAA1462 Missense_Mutation p.A522T 0.26 tolerated(0.8) benign(0.004) TCGA-FW-A3R5-06 10 30317795 30317795 C T KIAA1462 Missense_Mutation p.D428N 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 30318780 30318780 G A KIAA1462 Silent p.P99P 0.15 TCGA-FW-A3R5-06 10 30602580 30602580 G A MTPAP Silent p.F569F 0.29 TCGA-FW-A3R5-06 10 30605092 30605092 G A MTPAP Missense_Mutation p.R423C 0.21 tolerated(0.1) benign(0.006) TCGA-FW-A3R5-06 10 30918621 30918621 G C LYZL2 Missense_Mutation p.P5R 0.14 deleterious_low_confidence(0) benign(0) TCGA-FW-A3R5-06 10 31139024 31139024 G A ZNF438 Nonsense_Mutation p.Q104* 0.22 TCGA-FW-A3R5-06 10 31610336 31610336 G A ZEB1 Intron 0.22 TCGA-FW-A3R5-06 10 31750138 31750138 G A ZEB1 Silent p.G77G 0.24 TCGA-FW-A3R5-06 10 31810494 31810494 G A ZEB1 Missense_Mutation p.G745E 0.19 tolerated(0.45) possibly_damaging(0.839) TCGA-FW-A3R5-06 10 31810843 31810843 G A ZEB1 Silent p.V861V 0.30 TCGA-FW-A3R5-06 10 31815971 31815971 G A ZEB1 Missense_Mutation p.E1053K 0.25 deleterious_low_confidence(0.04) benign(0) TCGA-FW-A3R5-06 10 31816128 31816128 G A ZEB1 Missense_Mutation p.S1105N 0.29 tolerated_low_confidence(0.3) benign(0.213) TCGA-FW-A3R5-06 10 32320161 32320161 A G KIF5B Missense_Mutation p.L474P 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 32800623 32800623 C T CCDC7 Intron 0.17 TCGA-FW-A3R5-06 10 33143334 33143334 C T C10ORF68 Missense_Mutation p.S586L 0.23 tolerated(0.13) possibly_damaging(0.793) TCGA-FW-A3R5-06 10 33468858 33468858 C T NRP1 3'UTR 0.38 TCGA-FW-A3R5-06 10 33475234 33475234 C T NRP1 Missense_Mutation p.D749N 0.28 tolerated(0.19) possibly_damaging(0.836) TCGA-FW-A3R5-06 10 33552743 33552743 G A NRP1 Silent p.F163F 0.23 TCGA-FW-A3R5-06 10 33559689 33559689 G A NRP1 Missense_Mutation p.S115L 0.27 deleterious(0) possibly_damaging(0.495) TCGA-FW-A3R5-06 10 34400213 34400213 G A PARD3 Missense_Mutation p.P1319S 0.19 deleterious_low_confidence(0.01) benign(0.005) TCGA-FW-A3R5-06 10 37430806 37430806 G A ANKRD30A Silent p.E271E 0.24 TCGA-FW-A3R5-06 10 37433933 37433933 C T ANKRD30A Silent p.F412F 0.33 TCGA-FW-A3R5-06 10 37441019 37441019 G A ANKRD30A Silent p.K503K 0.18 TCGA-FW-A3R5-06 10 37447489 37447489 G A ANKRD30A Silent p.L569L 0.23 TCGA-FW-A3R5-06 10 37451769 37451769 G A ANKRD30A Silent p.L609L 0.32 TCGA-FW-A3R5-06 10 37454063 37454063 G A ANKRD30A Missense_Mutation p.E626K 0.38 tolerated(0.56) benign(0.032) TCGA-FW-A3R5-06 10 37482128 37482128 G A ANKRD30A Missense_Mutation p.M796I 0.30 tolerated(0.16) benign(0.001) TCGA-FW-A3R5-06 10 37486340 37486340 C T ANKRD30A Missense_Mutation p.A827V 0.23 tolerated(0.1) probably_damaging(0.935) TCGA-FW-A3R5-06 10 37486341 37486341 C T ANKRD30A Silent p.A827A 0.23 TCGA-FW-A3R5-06 10 37505206 37505206 G A ANKRD30A Missense_Mutation p.M933I 0.29 tolerated(1) benign(0.107) TCGA-FW-A3R5-06 10 37505221 37505221 G A ANKRD30A Silent p.K938K 0.17 TCGA-FW-A3R5-06 10 37506752 37506752 G A ANKRD30A Silent p.Q1015Q 0.49 TCGA-FW-A3R5-06 10 37506753 37506753 G A ANKRD30A Missense_Mutation p.A1016T 0.16 tolerated(0.31) possibly_damaging(0.811) TCGA-FW-A3R5-06 10 37508103 37508103 G A ANKRD30A Missense_Mutation p.E1099K 0.30 tolerated(0.4) benign(0.001) TCGA-FW-A3R5-06 10 37508120 37508120 G A ANKRD30A Silent p.R1104R 0.21 TCGA-FW-A3R5-06 10 37508190 37508190 G A ANKRD30A Missense_Mutation p.E1128K 0.06 deleterious(0.01) possibly_damaging(0.636) TCGA-FW-A3R5-06 10 37508413 37508413 G A ANKRD30A Missense_Mutation p.R1202K 0.18 tolerated(0.13) benign(0.009) TCGA-FW-A3R5-06 10 37508751 37508751 G A ANKRD30A Missense_Mutation p.E1315K 0.21 tolerated(1) possibly_damaging(0.636) TCGA-FW-A3R5-06 10 38121119 38121119 G A ZNF248 Silent p.T388T 0.18 TCGA-FW-A3R5-06 10 38127004 38127004 G A ZNF248 Silent p.F17F 0.22 TCGA-FW-A3R5-06 10 38345344 38345344 C T ZNF33A Silent p.L764L 0.25 TCGA-FW-A3R5-06 10 38353019 38353019 C T ZNF33A 3'Flank 0.31 TCGA-FW-A3R5-06 10 38652442 38652442 C T HSD17B7P2 RNA 0.25 TCGA-FW-A3R5-06 10 394645 394645 G A DIP2C Missense_Mutation p.T1056I 0.26 deleterious(0.04) possibly_damaging(0.903) TCGA-FW-A3R5-06 10 408507 408507 G A DIP2C Missense_Mutation p.S906F 0.15 deleterious(0) benign(0.365) TCGA-FW-A3R5-06 10 409209 409209 G A DIP2C Silent p.I840I 0.27 TCGA-FW-A3R5-06 10 410451 410451 G A DIP2C Silent p.F780F 0.22 TCGA-FW-A3R5-06 10 42928724 42928724 G A CCNYL2 RNA 0.33 TCGA-FW-A3R5-06 10 43279991 43279991 C T BMS1 Missense_Mutation p.A50V 0.22 deleterious(0.05) probably_damaging(0.942) TCGA-FW-A3R5-06 10 43285837 43285837 C T BMS1 Nonsense_Mutation p.Q172* 0.22 TCGA-FW-A3R5-06 10 43596087 43596087 G A RET Nonsense_Mutation p.W85* 0.19 TCGA-FW-A3R5-06 10 43678790 43678790 C T CSGALNACT2 Missense_Mutation p.P477S 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-FW-A3R5-06 10 43694429 43694429 C T RASGEF1A Silent p.L328L 0.35 TCGA-FW-A3R5-06 10 44052332 44052332 C T ZNF239 Missense_Mutation p.G399E 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 44052360 44052360 G A ZNF239 Missense_Mutation p.L390F 0.09 tolerated(0.19) probably_damaging(1) TCGA-FW-A3R5-06 10 44052376 44052376 G A ZNF239 Silent p.F384F 0.26 TCGA-FW-A3R5-06 10 44052906 44052906 C T ZNF239 Missense_Mutation p.E208K 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 10 44053363 44053363 G A ZNF239 Silent p.F55F 0.29 TCGA-FW-A3R5-06 10 44871439 44871439 C T CXCL12 3'Flank 0.22 TCGA-FW-A3R5-06 10 44873247 44873247 G A CXCL12 Missense_Mutation p.R125C 0.29 deleterious_low_confidence(0.03) probably_damaging(0.941) TCGA-FW-A3R5-06 10 45478097 45478097 G A RASSF4 Silent p.R89R 0.19 TCGA-FW-A3R5-06 10 45479473 45479473 G A RASSF4 Silent p.K95K 0.30 TCGA-FW-A3R5-06 10 45484726 45484726 C T RASSF4 Missense_Mutation p.S179F 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 45484823 45484823 G A RASSF4 Silent p.R211R 0.30 TCGA-FW-A3R5-06 10 45644317 45644317 G A RP11-445N18.7 RNA 0.23 TCGA-FW-A3R5-06 10 45652289 45652289 C T RP11-445N18.7 RNA 0.24 TCGA-FW-A3R5-06 10 45799175 45799175 G A OR13A1 Silent p.T232T 0.22 TCGA-FW-A3R5-06 10 45799190 45799190 C T OR13A1 Silent p.V227V 0.18 TCGA-FW-A3R5-06 10 45799331 45799331 C T OR13A1 Silent p.L180L 0.31 TCGA-FW-A3R5-06 10 45799376 45799376 G A OR13A1 Silent p.A165A 0.22 TCGA-FW-A3R5-06 10 45799873 45799873 G A OR13A1 5'UTR 0.34 TCGA-FW-A3R5-06 10 45877960 45877960 G A ALOX5 Silent p.E60E 0.24 TCGA-FW-A3R5-06 10 45878105 45878105 G A ALOX5 Missense_Mutation p.E109K 0.19 tolerated(0.4) benign(0.296) TCGA-FW-A3R5-06 10 45936027 45936027 G A ALOX5 Silent p.E377E 0.32 TCGA-FW-A3R5-06 10 45956872 45956872 G A MARCH8 Intron 0.20 TCGA-FW-A3R5-06 10 46122066 46122066 G A ZFAND4 Missense_Mutation p.A402V 0.31 tolerated(0.18) benign(0.219) TCGA-FW-A3R5-06 10 46143848 46143848 G A ZFAND4 Missense_Mutation p.P155S 0.11 deleterious(0.01) benign(0.044) TCGA-FW-A3R5-06 10 46148504 46148504 A G ZFAND4 Missense_Mutation p.I63T 0.24 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 10 46999077 46999077 G A GPRIN2 Missense_Mutation p.G66E 0.12 tolerated(0.2) benign(0.012) TCGA-FW-A3R5-06 10 46999214 46999214 C T GPRIN2 Missense_Mutation p.P112S 0.12 deleterious(0.05) benign(0.348) TCGA-FW-A3R5-06 10 46999549 46999549 C T GPRIN2 Silent p.T223T 0.23 TCGA-FW-A3R5-06 10 46999572 46999572 C T GPRIN2 Missense_Mutation p.P231L 0.22 deleterious(0.02) possibly_damaging(0.898) TCGA-FW-A3R5-06 10 46999578 46999578 C T GPRIN2 Missense_Mutation p.A233V 0.09 tolerated(0.11) possibly_damaging(0.743) TCGA-FW-A3R5-06 10 46999996 46999996 G A GPRIN2 Silent p.L372L 0.13 TCGA-FW-A3R5-06 10 47087792 47087792 G A NPY4R Missense_Mutation p.V337M 0.14 tolerated(0.05) benign(0.271) TCGA-FW-A3R5-06 10 47087825 47087825 G A NPY4R Missense_Mutation p.E348K 0.11 tolerated(0.21) benign(0.005) TCGA-FW-A3R5-06 10 48370524 48370524 G A ZNF488 5'UTR 0.23 TCGA-FW-A3R5-06 10 48370644 48370644 G A ZNF488 Missense_Mutation p.E38K 0.29 tolerated(0.07) benign(0.059) TCGA-FW-A3R5-06 10 48370691 48370691 G A ZNF488 Silent p.T53T 0.29 TCGA-FW-A3R5-06 10 48370707 48370707 G A ZNF488 Missense_Mutation p.E59K 0.33 tolerated(0.36) benign(0.303) TCGA-FW-A3R5-06 10 48370805 48370805 G A ZNF488 Silent p.P91P 0.23 TCGA-FW-A3R5-06 10 48371472 48371472 G A ZNF488 Missense_Mutation p.E314K 0.29 deleterious(0.01) benign(0.157) TCGA-FW-A3R5-06 10 48381938 48381938 C T RBP3 Silent p.V1237V 0.16 TCGA-FW-A3R5-06 10 48382030 48382030 C T RBP3 Missense_Mutation p.E1207K 0.36 deleterious(0.02) possibly_damaging(0.621) TCGA-FW-A3R5-06 10 48385910 48385910 C T RBP3 Missense_Mutation p.R1061K 0.25 tolerated(0.22) benign(0) TCGA-FW-A3R5-06 10 48388446 48388446 G A RBP3 Missense_Mutation p.S811F 0.35 deleterious(0) possibly_damaging(0.788) TCGA-FW-A3R5-06 10 48388705 48388705 C T RBP3 Missense_Mutation p.E725K 0.39 deleterious(0.02) benign(0.292) TCGA-FW-A3R5-06 10 48388862 48388862 G A RBP3 Silent p.A672A 0.34 TCGA-FW-A3R5-06 10 48389216 48389216 G A RBP3 Silent p.F554F 0.35 TCGA-FW-A3R5-06 10 48390061 48390061 C T RBP3 Missense_Mutation p.E273K 0.28 tolerated(0.41) benign(0.426) TCGA-FW-A3R5-06 10 48390632 48390632 C T RBP3 Silent p.L82L 0.33 TCGA-FW-A3R5-06 10 48413558 48413558 C T GDF2 3'UTR 0.46 TCGA-FW-A3R5-06 10 48413716 48413716 G A GDF2 Silent p.F384F 0.13 TCGA-FW-A3R5-06 10 48413782 48413782 G A GDF2 Silent p.F362F 0.26 TCGA-FW-A3R5-06 10 48413859 48413859 C T GDF2 Missense_Mutation p.E337K 0.26 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 10 48414342 48414342 G A GDF2 Silent p.L176L 0.27 TCGA-FW-A3R5-06 10 48416519 48416519 G A GDF2 Silent p.L59L 0.10 TCGA-FW-A3R5-06 10 48428731 48428731 G A GDF10 Silent p.F385F 0.40 TCGA-FW-A3R5-06 10 48428946 48428946 G A GDF10 Missense_Mutation p.H314Y 0.35 tolerated(0.24) benign(0.189) TCGA-FW-A3R5-06 10 48429349 48429349 C T GDF10 Silent p.Q179Q 0.12 TCGA-FW-A3R5-06 10 48429431 48429431 G A GDF10 Missense_Mutation p.P152L 0.14 tolerated(0.09) benign(0.003) TCGA-FW-A3R5-06 10 48438674 48438674 C T GDF10 Missense_Mutation p.G13R 0.16 tolerated_low_confidence(0.75) benign(0.001) TCGA-FW-A3R5-06 10 4879714 4879714 G A AKR1E2 Missense_Mutation p.E175K 0.30 tolerated(0.56) benign(0.173) TCGA-FW-A3R5-06 10 4883992 4883992 G A AKR1E2 Silent p.L232L 0.27 TCGA-FW-A3R5-06 10 49386169 49386169 G A FRMPD2 Missense_Mutation p.S939L 0.28 tolerated(0.16) benign(0.007) TCGA-FW-A3R5-06 10 49400782 49400782 C T FRMPD2 Missense_Mutation p.D704N 0.17 tolerated(0.08) possibly_damaging(0.632) TCGA-FW-A3R5-06 10 49420128 49420128 G A FRMPD2 Missense_Mutation p.H494Y 0.35 deleterious(0) benign(0.359) TCGA-FW-A3R5-06 10 49440321 49440321 C T FRMPD2 Silent p.G335G 0.35 TCGA-FW-A3R5-06 10 49446098 49446098 G A FRMPD2 Missense_Mutation p.S286L 0.33 tolerated(0.25) benign(0.002) TCGA-FW-A3R5-06 10 49446130 49446130 C T FRMPD2 Silent p.A275A 0.25 TCGA-FW-A3R5-06 10 49459684 49459684 C T FRMPD2 Missense_Mutation p.E26K 0.30 tolerated(0.53) benign(0.022) TCGA-FW-A3R5-06 10 49654453 49654453 C T ARHGAP22 Missense_Mutation p.G709D 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-FW-A3R5-06 10 49654524 49654524 C T ARHGAP22 Silent p.R685R 0.34 TCGA-FW-A3R5-06 10 49663097 49663097 C T ARHGAP22 Missense_Mutation p.R263K 0.21 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 10 49663135 49663135 G A ARHGAP22 Silent p.Y250Y 0.19 TCGA-FW-A3R5-06 10 49687661 49687662 - ATGATTACCTGGAGGCAAGGGTTCTAGAGGGTGGGCATGCGATCT ARHGAP22 In_Frame_Ins p.S156_H157insRSHAHPLEPLPPGNH 0.10 TCGA-FW-A3R5-06 10 49812809 49812809 C T ARHGAP22 Silent p.R11R 0.20 TCGA-FW-A3R5-06 10 49812813 49812813 C T ARHGAP22 Missense_Mutation p.R10K 0.25 tolerated(0.32) benign(0.047) TCGA-FW-A3R5-06 10 5006069 5006069 G A AKR1C1 Intron 0.17 TCGA-FW-A3R5-06 10 5011070 5011070 C T AKR1C1 Silent p.F168F 0.35 TCGA-FW-A3R5-06 10 50121372 50121372 T G LRRC18 Intron 0.25 TCGA-FW-A3R5-06 10 50121384 50121384 C T LRRC18 Intron 0.15 TCGA-FW-A3R5-06 10 50121439 50121439 C T LRRC18 Nonsense_Mutation p.W254* 0.26 TCGA-FW-A3R5-06 10 50121447 50121447 C T LRRC18 Missense_Mutation p.E252K 0.32 tolerated(0.06) benign(0.118) TCGA-FW-A3R5-06 10 50121613 50121613 C T LRRC18 Silent p.E196E 0.30 TCGA-FW-A3R5-06 10 50121997 50121997 G A LRRC18 Silent p.S68S 0.19 TCGA-FW-A3R5-06 10 5014844 5014844 G A AKR1C1 Missense_Mutation p.R250Q 0.19 tolerated(0.23) benign(0.012) TCGA-FW-A3R5-06 10 50227672 50227672 G A VSTM4 3'UTR 0.23 TCGA-FW-A3R5-06 10 50294041 50294041 G A VSTM4 Missense_Mutation p.S162L 0.19 tolerated(0.21) benign(0.118) TCGA-FW-A3R5-06 10 50311713 50311713 G A VSTM4 Intron 0.29 TCGA-FW-A3R5-06 10 50315887 50315887 G A VSTM4 Missense_Mutation p.S70F 0.28 deleterious(0.02) possibly_damaging(0.794) TCGA-FW-A3R5-06 10 5037642 5037642 G A AKR1C2 Missense_Mutation p.P239S 0.23 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 10 50396355 50396355 C T C10orf128 Silent p.R9R 0.23 TCGA-FW-A3R5-06 10 50530560 50530560 C T C10orf71 5'UTR 0.40 TCGA-FW-A3R5-06 10 50530608 50530608 G A C10orf71 Silent p.K6K 0.24 TCGA-FW-A3R5-06 10 50531100 50531100 G A C10orf71 Silent p.L170L 0.21 TCGA-FW-A3R5-06 10 50531154 50531154 C T C10orf71 Silent p.F188F 0.21 TCGA-FW-A3R5-06 10 50531463 50531463 G A C10orf71 Silent p.K291K 0.32 TCGA-FW-A3R5-06 10 50531592 50531592 A T C10orf71 Missense_Mutation p.E334D 0.19 deleterious(0.04) benign(0.031) TCGA-FW-A3R5-06 10 50531646 50531646 G A C10orf71 Silent p.R352R 0.36 TCGA-FW-A3R5-06 10 50531707 50531707 C T C10orf71 Nonsense_Mutation p.Q373* 0.18 TCGA-FW-A3R5-06 10 50531760 50531760 G A C10orf71 Silent p.G390G 0.24 TCGA-FW-A3R5-06 10 50531893 50531893 G A C10orf71 Missense_Mutation p.E435K 0.23 tolerated(0.16) benign(0.037) TCGA-FW-A3R5-06 10 50532019 50532019 G A C10orf71 Missense_Mutation p.G477R 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 50532053 50532053 C T C10orf71 Missense_Mutation p.S488F 0.13 deleterious(0.05) possibly_damaging(0.879) TCGA-FW-A3R5-06 10 50532391 50532391 C T C10orf71 Missense_Mutation p.P601S 0.31 tolerated(0.76) benign(0.106) TCGA-FW-A3R5-06 10 50535063 50535063 G A C10orf71 3'UTR 0.20 TCGA-FW-A3R5-06 10 50574376 50574376 G A DRGX Missense_Mutation p.L198F 0.27 tolerated(0.19) possibly_damaging(0.714) TCGA-FW-A3R5-06 10 50666730 50666730 G A ERCC6 3'UTR 0.36 TCGA-FW-A3R5-06 10 50679123 50679123 G A ERCC6 Missense_Mutation p.P990S 0.17 deleterious(0) possibly_damaging(0.667) TCGA-FW-A3R5-06 10 50684298 50684298 G A ERCC6 Missense_Mutation p.S782F 0.21 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 10 50701195 50701195 G A ERCC6 Silent p.L597L 0.21 TCGA-FW-A3R5-06 10 50736487 50736487 G A ERCC6-PGBD3 Missense_Mutation p.H210Y 0.25 deleterious_low_confidence(0) benign(0.145) TCGA-FW-A3R5-06 10 50819612 50819612 C T SLC18A3 Silent p.L276L 0.34 TCGA-FW-A3R5-06 10 50819707 50819707 C T SLC18A3 Silent p.F307F 0.38 TCGA-FW-A3R5-06 10 50857597 50857597 G A CHAT Missense_Mutation p.E476K 0.17 tolerated(0.08) benign(0.126) TCGA-FW-A3R5-06 10 50902023 50902023 C T C10orf53 Intron 0.43 TCGA-FW-A3R5-06 10 50902647 50902647 G A C10orf53 Intron 0.29 TCGA-FW-A3R5-06 10 50902676 50902676 C T C10orf53 Intron 0.32 TCGA-FW-A3R5-06 10 50946288 50946288 C T OGDHL Silent p.A780A 0.21 TCGA-FW-A3R5-06 10 50947861 50947861 G A OGDHL Missense_Mutation p.A722V 0.30 tolerated(0.76) benign(0.084) TCGA-FW-A3R5-06 10 50957857 50957857 C T OGDHL Missense_Mutation p.R301K 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 50958925 50958925 C T OGDHL Missense_Mutation p.E286K 0.16 tolerated(0.11) benign(0.086) TCGA-FW-A3R5-06 10 50959005 50959005 C T OGDHL Nonsense_Mutation p.W259* 0.23 TCGA-FW-A3R5-06 10 50959019 50959019 G A OGDHL Silent p.F254F 0.29 TCGA-FW-A3R5-06 10 50964978 50964978 G A OGDHL Silent p.F73F 0.22 TCGA-FW-A3R5-06 10 5136565 5136565 C T AKR1C3 5'UTR 0.27 TCGA-FW-A3R5-06 10 5141002 5141002 G A AKR1C3 Silent p.E126E 0.25 TCGA-FW-A3R5-06 10 51465237 51465237 C T AGAP7 Missense_Mutation p.E407K 0.24 deleterious(0.05) possibly_damaging(0.666) TCGA-FW-A3R5-06 10 51465313 51465313 C T AGAP7 Silent p.K381K 0.20 TCGA-FW-A3R5-06 10 5147850 5147850 C T AKR1C3 Missense_Mutation p.H304Y 0.25 deleterious(0) benign(0.076) TCGA-FW-A3R5-06 10 51555737 51555737 C T MSMB Missense_Mutation p.L4F 0.28 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A3R5-06 10 51556768 51556768 G A MSMB Missense_Mutation p.G43R 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 51562352 51562352 G A MSMB Silent p.E99E 0.31 TCGA-FW-A3R5-06 10 51562358 51562358 G A MSMB Silent p.K101K 0.09 TCGA-FW-A3R5-06 10 51751483 51751483 C T AGAP6 Nonsense_Mutation p.Q114* 0.08 TCGA-FW-A3R5-06 10 51818892 51818892 G A RP11-324H6.5 RNA 0.32 TCGA-FW-A3R5-06 10 52003004 52003004 G A ASAH2 Silent p.V156V 0.27 TCGA-FW-A3R5-06 10 5203915 5203915 C T AKR1CL1 Silent p.R94R 0.28 TCGA-FW-A3R5-06 10 5204841 5204841 C T AKR1CL1 Missense_Mutation p.R79K 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 52066884 52066884 C T SGMS1 3'UTR 0.18 TCGA-FW-A3R5-06 10 52103484 52103484 C T SGMS1 Missense_Mutation p.E131K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 10 52103717 52103717 G A SGMS1 Missense_Mutation p.S53F 0.37 deleterious(0.03) possibly_damaging(0.828) TCGA-FW-A3R5-06 10 52103772 52103772 C T SGMS1 Missense_Mutation p.D35N 0.34 tolerated(0.12) possibly_damaging(0.493) TCGA-FW-A3R5-06 10 5227059 5227059 C T AKR1CL1 Silent p.T3T 0.31 TCGA-FW-A3R5-06 10 52389396 52389396 C T RP11-50E11.3 RNA 0.33 TCGA-FW-A3R5-06 10 52502754 52502754 C T ASAH2B Silent p.L24L 0.08 TCGA-FW-A3R5-06 10 52573812 52573812 C T A1CF Intron 0.27 TCGA-FW-A3R5-06 10 52580396 52580396 C T A1CF Silent p.R269R 0.11 TCGA-FW-A3R5-06 10 5258737 5258737 C T AKR1C4 Nonsense_Mutation p.R304* 0.29 TCGA-FW-A3R5-06 10 52587970 52587970 C T A1CF Silent p.V238V 0.24 TCGA-FW-A3R5-06 10 52595973 52595973 C T A1CF Silent p.E163E 0.18 TCGA-FW-A3R5-06 10 52596062 52596062 G A A1CF Missense_Mutation p.L134F 0.36 tolerated(0.61) probably_damaging(0.999) TCGA-FW-A3R5-06 10 52603771 52603771 C T A1CF Missense_Mutation p.E79K 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 10 52603784 52603784 G A A1CF Silent p.D74D 0.22 TCGA-FW-A3R5-06 10 52603813 52603813 C T A1CF Missense_Mutation p.E65K 0.20 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 10 52619652 52619652 C T A1CF 5'UTR 0.38 TCGA-FW-A3R5-06 10 53459007 53459007 T A CSTF2T Missense_Mutation p.L101F 0.30 tolerated(0.06) probably_damaging(0.943) TCGA-FW-A3R5-06 10 54031199 54031199 C T PRKG1 Silent p.I421I 0.20 TCGA-FW-A3R5-06 10 54040554 54040554 C T PRKG1 Missense_Mutation p.S470L 0.22 tolerated(0.61) benign(0.147) TCGA-FW-A3R5-06 10 54074332 54074332 C T DKK1 Silent p.P46P 0.22 TCGA-FW-A3R5-06 10 5435776 5435776 G A TUBAL3 Nonsense_Mutation p.Q349* 0.37 TCGA-FW-A3R5-06 10 5435978 5435978 G A TUBAL3 Silent p.P281P 0.27 TCGA-FW-A3R5-06 10 54530490 54530490 G A MBL2 Missense_Mutation p.P82S 0.17 tolerated(0.18) benign(0.196) TCGA-FW-A3R5-06 10 55566490 55566490 C T PCDH15 Missense_Mutation p.R1632K 0.30 tolerated_low_confidence(1) benign(0.071) TCGA-FW-A3R5-06 10 55566682 55566682 G A PCDH15 Missense_Mutation p.S1568F 0.18 deleterious_low_confidence(0) benign(0.067) TCGA-FW-A3R5-06 10 55568937 55568937 C T PCDH15 Missense_Mutation p.E559K 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 10 55569084 55569084 C T PCDH15 Missense_Mutation p.E510K 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 10 55569295 55569295 C T PCDH15 Missense_Mutation p.R1522K 0.16 benign(0) TCGA-FW-A3R5-06 10 55581519 55581519 G A PCDH15 3'UTR 0.28 TCGA-FW-A3R5-06 10 55582700 55582700 C T PCDH15 Missense_Mutation p.D1598N 0.08 tolerated_low_confidence(0.19) benign(0.049) TCGA-FW-A3R5-06 10 5567368 5567368 G A CALML3 Missense_Mutation p.R107Q 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.729) TCGA-FW-A3R5-06 10 55719575 55719575 C T PCDH15 Silent p.E1013E 0.29 TCGA-FW-A3R5-06 10 55912872 55912872 G A PCDH15 Missense_Mutation p.P591L 0.21 tolerated(0.48) benign(0.062) TCGA-FW-A3R5-06 10 55913032 55913032 C T PCDH15 Missense_Mutation p.E538K 0.08 deleterious(0.04) possibly_damaging(0.781) TCGA-FW-A3R5-06 10 55955503 55955503 C T PCDH15 Silent p.S415S 0.27 TCGA-FW-A3R5-06 10 56089453 56089453 G A PCDH15 Missense_Mutation p.T203I 0.32 tolerated(0.08) probably_damaging(0.989) TCGA-FW-A3R5-06 10 56424026 56424026 C T PCDH15 5'UTR 0.14 TCGA-FW-A3R5-06 10 59956189 59956189 G A IPMK Missense_Mutation p.S300F 0.18 tolerated(0.21) benign(0.396) TCGA-FW-A3R5-06 10 6002493 6002493 C T IL15RA Silent p.A140A 0.33 TCGA-FW-A3R5-06 10 6008124 6008124 G A IL15RA Silent p.P89P 0.16 TCGA-FW-A3R5-06 10 6008179 6008179 C T IL15RA Missense_Mutation p.S71N 0.33 deleterious(0) probably_damaging(0.943) TCGA-FW-A3R5-06 10 60549101 60549101 C T BICC1 Missense_Mutation p.S227F 0.31 tolerated(0.65) benign(0.081) TCGA-FW-A3R5-06 10 60549102 60549102 T C BICC1 Silent p.S227S 0.31 TCGA-FW-A3R5-06 10 60558971 60558971 G A BICC1 Missense_Mutation p.E562K 0.23 tolerated(0.43) possibly_damaging(0.53) TCGA-FW-A3R5-06 10 60562911 60562911 G A BICC1 Missense_Mutation p.G697E 0.13 tolerated(0.06) probably_damaging(1) TCGA-FW-A3R5-06 10 60562913 60562913 A T BICC1 Missense_Mutation p.S698C 0.13 tolerated(0.15) probably_damaging(0.998) TCGA-FW-A3R5-06 10 6061852 6061852 G A IL2RA Silent p.S212S 0.28 TCGA-FW-A3R5-06 10 6063514 6063514 C T IL2RA Missense_Mutation p.M170I 0.27 tolerated(0.23) benign(0.273) TCGA-FW-A3R5-06 10 6063645 6063645 C T IL2RA Missense_Mutation p.E127K 0.24 deleterious(0.02) probably_damaging(0.96) TCGA-FW-A3R5-06 10 60994167 60994167 G A PHYHIPL Nonsense_Mutation p.W70* 0.18 TCGA-FW-A3R5-06 10 61028342 61028342 C T FAM13C Missense_Mutation p.E305K 0.25 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 10 61028352 61028352 C T FAM13C Silent p.R301R 0.31 TCGA-FW-A3R5-06 10 61115696 61115696 C T FAM13C Missense_Mutation p.E24K 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.629) TCGA-FW-A3R5-06 10 61413644 61413644 G A SLC16A9 Silent p.I380I 0.33 TCGA-FW-A3R5-06 10 61414214 61414214 G A SLC16A9 Silent p.P190P 0.27 TCGA-FW-A3R5-06 10 61414215 61414215 G A SLC16A9 Missense_Mutation p.P190L 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 61424021 61424021 C T SLC16A9 Missense_Mutation p.D134N 0.33 deleterious(0.03) benign(0) TCGA-FW-A3R5-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.25 TCGA-FW-A3R5-06 10 61819614 61819614 G A ANK3 Intron 0.18 TCGA-FW-A3R5-06 10 61819654 61819654 G A ANK3 Intron 0.24 TCGA-FW-A3R5-06 10 61822884 61822884 G A ANK3 Missense_Mutation p.H4194Y 0.21 probably_damaging(0.968) TCGA-FW-A3R5-06 10 61828486 61828486 C T ANK3 Silent p.T4051T 0.28 TCGA-FW-A3R5-06 10 61828635 61828635 C T ANK3 Missense_Mutation p.G4002R 0.30 probably_damaging(0.998) TCGA-FW-A3R5-06 10 61829395 61829395 C T ANK3 Silent p.V3748V 0.28 TCGA-FW-A3R5-06 10 61831246 61831246 G A ANK3 Silent p.T3131T 0.18 TCGA-FW-A3R5-06 10 61831429 61831429 G A ANK3 Silent p.P3070P 0.23 TCGA-FW-A3R5-06 10 61831698 61831698 C T ANK3 Missense_Mutation p.E2981K 0.31 benign(0) TCGA-FW-A3R5-06 10 61831800 61831800 G A ANK3 Nonsense_Mutation p.Q2947* 0.29 TCGA-FW-A3R5-06 10 61832027 61832027 G A ANK3 Missense_Mutation p.S2871L 0.26 benign(0.216) TCGA-FW-A3R5-06 10 61832220 61832220 C T ANK3 Missense_Mutation p.D2807N 0.31 benign(0.041) TCGA-FW-A3R5-06 10 61832380 61832380 C T ANK3 Silent p.E2753E 0.26 TCGA-FW-A3R5-06 10 61832614 61832614 C T ANK3 Silent p.K2675K 0.22 TCGA-FW-A3R5-06 10 61832883 61832883 C T ANK3 Missense_Mutation p.E2586K 0.31 probably_damaging(0.956) TCGA-FW-A3R5-06 10 61833477 61833477 C T ANK3 Missense_Mutation p.E2388K 0.71 probably_damaging(0.956) TCGA-FW-A3R5-06 10 61833794 61833794 G A ANK3 Missense_Mutation p.S2282F 0.06 probably_damaging(0.979) TCGA-FW-A3R5-06 10 61833963 61833963 C T ANK3 Missense_Mutation p.E2226K 0.17 benign(0.023) TCGA-FW-A3R5-06 10 61834025 61834025 G A ANK3 Missense_Mutation p.P2205L 0.26 benign(0.016) TCGA-FW-A3R5-06 10 61834329 61834329 C T ANK3 Missense_Mutation p.G2104R 0.25 probably_damaging(0.998) TCGA-FW-A3R5-06 10 61834595 61834595 C T ANK3 Missense_Mutation p.R2015K 0.19 benign(0) TCGA-FW-A3R5-06 10 61835772 61835772 G A ANK3 Nonsense_Mutation p.R1623* 0.24 TCGA-FW-A3R5-06 10 61843269 61843269 C T ANK3 Missense_Mutation p.R1394K 0.18 probably_damaging(0.989) TCGA-FW-A3R5-06 10 61843365 61843365 C T ANK3 Missense_Mutation p.G1362E 0.26 probably_damaging(1) TCGA-FW-A3R5-06 10 61843366 61843366 C T ANK3 Missense_Mutation p.G1362R 0.26 probably_damaging(1) TCGA-FW-A3R5-06 10 61844389 61844389 C T ANK3 Missense_Mutation p.E1349K 0.26 possibly_damaging(0.766) TCGA-FW-A3R5-06 10 61844941 61844941 G A ANK3 Silent p.V1273V 0.24 TCGA-FW-A3R5-06 10 61847951 61847951 G A ANK3 Missense_Mutation p.S1165F 0.18 probably_damaging(0.963) TCGA-FW-A3R5-06 10 61848064 61848064 C T ANK3 Silent p.T1127T 0.21 TCGA-FW-A3R5-06 10 61848091 61848091 C T ANK3 Silent p.G1118G 0.08 TCGA-FW-A3R5-06 10 61865750 61865750 G A ANK3 Nonsense_Mutation p.R1081* 0.19 TCGA-FW-A3R5-06 10 61868589 61868589 C T ANK3 Missense_Mutation p.G1058S 0.13 probably_damaging(1) TCGA-FW-A3R5-06 10 61873986 61873986 G A ANK3 Missense_Mutation p.S982F 0.25 probably_damaging(0.995) TCGA-FW-A3R5-06 10 61894123 61894123 G A ANK3 Missense_Mutation p.S916F 0.29 probably_damaging(0.962) TCGA-FW-A3R5-06 10 61932087 61932087 G A ANK3 Silent p.T819T 0.19 TCGA-FW-A3R5-06 10 61941113 61941113 C T ANK3 Missense_Mutation p.G720R 0.19 probably_damaging(0.984) TCGA-FW-A3R5-06 10 61941141 61941141 C T ANK3 Silent p.V710V 0.32 TCGA-FW-A3R5-06 10 61962822 61962822 C T ANK3 Missense_Mutation p.G444R 0.22 probably_damaging(1) TCGA-FW-A3R5-06 10 61962829 61962829 G A ANK3 Silent p.A441A 0.38 TCGA-FW-A3R5-06 10 62029974 62029974 G A ANK3 Missense_Mutation p.P143L 0.24 probably_damaging(1) TCGA-FW-A3R5-06 10 62038627 62038627 C T ANK3 Missense_Mutation p.G107R 0.24 probably_damaging(1) TCGA-FW-A3R5-06 10 62552004 62552004 C T CDK1 Missense_Mutation p.S251F 0.33 deleterious(0.03) benign(0.012) TCGA-FW-A3R5-06 10 6261655 6261655 A G PFKFB3 Missense_Mutation p.R208G 0.19 possibly_damaging(0.569) TCGA-FW-A3R5-06 10 62647983 62647983 C T RHOBTB1 Silent p.K481K 0.32 TCGA-FW-A3R5-06 10 62648700 62648700 G A RHOBTB1 Silent p.V242V 0.10 TCGA-FW-A3R5-06 10 62652709 62652709 G A RHOBTB1 Missense_Mutation p.S114F 0.22 deleterious(0) benign(0.036) TCGA-FW-A3R5-06 10 63173294 63173294 C T TMEM26 Splice_Site p.X202_splice 0.30 TCGA-FW-A3R5-06 10 63440980 63440980 G A C10orf107 5'UTR 0.20 TCGA-FW-A3R5-06 10 63519931 63519931 G A C10orf107 Missense_Mutation p.E135K 0.18 deleterious(0.04) benign(0.365) TCGA-FW-A3R5-06 10 63700140 63700140 G A ARID5B Missense_Mutation p.D159N 0.16 deleterious(0) possibly_damaging(0.901) TCGA-FW-A3R5-06 10 63851848 63851848 C T ARID5B Nonsense_Mutation p.Q876* 0.24 TCGA-FW-A3R5-06 10 63852307 63852307 C T ARID5B Missense_Mutation p.R1029W 0.20 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 10 64136112 64136112 G A ZNF365 Missense_Mutation p.E54K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.64) TCGA-FW-A3R5-06 10 64159417 64159417 G A ZNF365 Intron 0.10 TCGA-FW-A3R5-06 10 64573977 64573977 G A EGR2 Missense_Mutation p.P141S 0.19 tolerated(0.62) probably_damaging(0.992) TCGA-FW-A3R5-06 10 6470088 6470088 G A PRKCQ 3'UTR 0.38 TCGA-FW-A3R5-06 10 6472810 6472810 C T PRKCQ Missense_Mutation p.E643K 0.25 deleterious(0) benign(0.068) TCGA-FW-A3R5-06 10 6483972 6483972 C T PRKCQ Silent p.L573L 0.29 TCGA-FW-A3R5-06 10 6484041 6484041 G A PRKCQ Silent p.I550I 0.22 TCGA-FW-A3R5-06 10 64893181 64893181 C T NRBF2 5'UTR 0.37 TCGA-FW-A3R5-06 10 64973550 64973550 G A JMJD1C Missense_Mutation p.P793S 0.31 tolerated(0.06) probably_damaging(0.995) TCGA-FW-A3R5-06 10 64974679 64974679 G A JMJD1C Silent p.P416P 0.24 TCGA-FW-A3R5-06 10 6527210 6527210 C T PRKCQ Missense_Mutation p.E308K 0.19 tolerated(0.48) benign(0.039) TCGA-FW-A3R5-06 10 65379551 65379551 C T REEP3 Silent p.G234G 0.21 TCGA-FW-A3R5-06 10 65379552 65379552 C T REEP3 Missense_Mutation p.R235C 0.24 deleterious(0.02) possibly_damaging(0.586) TCGA-FW-A3R5-06 10 6553068 6553068 G A PRKCQ Silent p.V69V 0.32 TCGA-FW-A3R5-06 10 67726390 67726390 C T CTNNA3 Missense_Mutation p.G794R 0.29 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 10 68280418 68280418 G A CTNNA3 Silent p.A496A 0.35 TCGA-FW-A3R5-06 10 68686806 68686806 G A LRRTM3 Missense_Mutation p.M44I 0.31 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 10 68686993 68686993 G A LRRTM3 Missense_Mutation p.G107R 0.19 tolerated(0.14) probably_damaging(1) TCGA-FW-A3R5-06 10 68687851 68687851 C T LRRTM3 Missense_Mutation p.P393S 0.22 tolerated(0.71) benign(0.004) TCGA-FW-A3R5-06 10 68940104 68940104 G A CTNNA3 Nonsense_Mutation p.Q340* 0.21 TCGA-FW-A3R5-06 10 68940198 68940198 G A CTNNA3 Silent p.I308I 0.30 TCGA-FW-A3R5-06 10 69281668 69281668 G A CTNNA3 Nonsense_Mutation p.Q171* 0.28 TCGA-FW-A3R5-06 10 69881562 69881562 C T MYPN Nonsense_Mutation p.R123* 0.08 TCGA-FW-A3R5-06 10 69881775 69881775 G A MYPN Missense_Mutation p.E194K 0.21 tolerated(0.46) benign(0.004) TCGA-FW-A3R5-06 10 69921589 69921589 G A MYPN Intron 0.24 TCGA-FW-A3R5-06 10 69921607 69921607 A T MYPN Intron 0.47 TCGA-FW-A3R5-06 10 69935090 69935090 G A MYPN Missense_Mutation p.G859R 0.37 deleterious(0) possibly_damaging(0.8) TCGA-FW-A3R5-06 10 69961741 69961741 G A MYPN Missense_Mutation p.E1217K 0.29 deleterious(0.02) benign(0.217) TCGA-FW-A3R5-06 10 70051922 70051922 G A PBLD Silent p.I119I 0.32 TCGA-FW-A3R5-06 10 70446398 70446398 C T TET1 Nonsense_Mutation p.R1780* 0.18 TCGA-FW-A3R5-06 10 70516049 70516049 C T CCAR1 Missense_Mutation p.R549C 0.35 tolerated(0.2) probably_damaging(0.993) TCGA-FW-A3R5-06 10 70644918 70644918 C T STOX1 Missense_Mutation p.P456S 0.34 tolerated(0.21) benign(0.04) TCGA-FW-A3R5-06 10 70645617 70645628 AAAGACTCAGAA - STOX1 In_Frame_Del p.K689_E692del 0.08 TCGA-FW-A3R5-06 10 70968663 70968663 C T SUPV3L1 Missense_Mutation p.P745S 0.25 deleterious(0.01) benign(0.158) TCGA-FW-A3R5-06 10 70986992 70986992 C T HKDC1 Silent p.L31L 0.11 TCGA-FW-A3R5-06 10 70987031 70987031 G A HKDC1 Silent p.R44R 0.30 TCGA-FW-A3R5-06 10 70987106 70987106 G A HKDC1 Silent p.R69R 0.21 TCGA-FW-A3R5-06 10 70992650 70992650 C T HKDC1 Silent p.I119I 0.23 TCGA-FW-A3R5-06 10 70998852 70998852 G A HKDC1 Missense_Mutation p.D184N 0.22 tolerated(0.17) possibly_damaging(0.786) TCGA-FW-A3R5-06 10 71008381 71008381 C T HKDC1 Silent p.A489A 0.23 TCGA-FW-A3R5-06 10 71103627 71103627 C T HK1 Silent p.L40L 0.30 TCGA-FW-A3R5-06 10 71176122 71176122 C T TACR2 5'UTR 0.35 TCGA-FW-A3R5-06 10 71332600 71332600 C T NEUROG3 Missense_Mutation p.G67E 0.29 deleterious(0.03) probably_damaging(0.989) TCGA-FW-A3R5-06 10 71332737 71332737 G A NEUROG3 Silent p.F21F 0.27 TCGA-FW-A3R5-06 10 71332740 71332740 G A NEUROG3 Silent p.S20S 0.29 TCGA-FW-A3R5-06 10 71631932 71631932 C T COL13A1 Intron 0.26 TCGA-FW-A3R5-06 10 71634886 71634886 G A COL13A1 Silent p.G134G 0.27 TCGA-FW-A3R5-06 10 71665544 71665544 G A COL13A1 Missense_Mutation p.G306E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 71690162 71690162 C T COL13A1 Missense_Mutation p.R502C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 71692349 71692349 C T COL13A1 Missense_Mutation p.P562S 0.18 tolerated(0.33) probably_damaging(0.997) TCGA-FW-A3R5-06 10 71705447 71705447 G A COL13A1 Silent p.G652G 0.29 TCGA-FW-A3R5-06 10 71707097 71707097 G A COL13A1 Missense_Mutation p.R675Q 0.19 tolerated(0.06) probably_damaging(0.993) TCGA-FW-A3R5-06 10 71707098 71707098 G C COL13A1 Silent p.R675R 0.19 TCGA-FW-A3R5-06 10 71712665 71712665 G A COL13A1 Missense_Mutation p.G685R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 71851671 71851671 G A H2AFY2 Silent p.G146G 0.23 TCGA-FW-A3R5-06 10 71853601 71853601 G A H2AFY2 Silent p.K196K 0.24 TCGA-FW-A3R5-06 10 72026113 72026113 G A NPFFR1 Silent p.P14P 0.33 TCGA-FW-A3R5-06 10 72061139 72061139 G A LRRC20 Missense_Mutation p.P176S 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-FW-A3R5-06 10 72297607 72297607 G A PALD1 Nonsense_Mutation p.W423* 0.20 TCGA-FW-A3R5-06 10 72299375 72299375 C T PALD1 Missense_Mutation p.P589S 0.27 tolerated(0.76) benign(0.004) TCGA-FW-A3R5-06 10 72299376 72299376 C T PALD1 Missense_Mutation p.P589L 0.28 tolerated(0.31) benign(0.002) TCGA-FW-A3R5-06 10 72299495 72299495 G A PALD1 Missense_Mutation p.D629N 0.24 tolerated(0.08) benign(0.248) TCGA-FW-A3R5-06 10 72301234 72301234 G A PALD1 Missense_Mutation p.G689S 0.23 tolerated(0.48) benign(0.078) TCGA-FW-A3R5-06 10 72324234 72324234 G A PALD1 Missense_Mutation p.A793T 0.28 tolerated(0.45) benign(0.008) TCGA-FW-A3R5-06 10 72358659 72358659 G A PRF1 Missense_Mutation p.S273F 0.21 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 10 72358893 72358893 C T PRF1 Missense_Mutation p.R195K 0.14 tolerated(0.57) benign(0.009) TCGA-FW-A3R5-06 10 72360381 72360381 G A PRF1 Missense_Mutation p.T93I 0.31 tolerated(0.09) benign(0.053) TCGA-FW-A3R5-06 10 72360523 72360523 C T PRF1 Missense_Mutation p.E46K 0.11 tolerated(0.06) possibly_damaging(0.556) TCGA-FW-A3R5-06 10 72360605 72360605 G A PRF1 Silent p.P18P 0.17 TCGA-FW-A3R5-06 10 72498746 72498746 C T ADAMTS14 Missense_Mutation p.S586F 0.36 tolerated(0.71) benign(0.003) TCGA-FW-A3R5-06 10 72509681 72509681 G A ADAMTS14 Silent p.V792V 0.20 TCGA-FW-A3R5-06 10 72509694 72509694 G A ADAMTS14 Missense_Mutation p.E797K 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-FW-A3R5-06 10 72509738 72509738 C T ADAMTS14 Silent p.I811I 0.15 TCGA-FW-A3R5-06 10 72511377 72511377 C T ADAMTS14 Silent p.A860A 0.27 TCGA-FW-A3R5-06 10 72520464 72520464 C T ADAMTS14 Missense_Mutation p.S1179F 0.29 tolerated_low_confidence(0.74) benign(0.001) TCGA-FW-A3R5-06 10 72538330 72538330 C T TBATA Missense_Mutation p.E164K 0.30 tolerated(0.15) benign(0.169) TCGA-FW-A3R5-06 10 72538358 72538358 G A TBATA Silent p.S154S 0.28 TCGA-FW-A3R5-06 10 72539488 72539488 C T TBATA Silent p.G96G 0.28 TCGA-FW-A3R5-06 10 7262416 7262416 G A SFMBT2 Silent p.S429S 0.31 TCGA-FW-A3R5-06 10 73044544 73044544 G A UNC5B Silent p.E124E 0.35 TCGA-FW-A3R5-06 10 73059093 73059093 G A UNC5B 3'UTR 0.32 TCGA-FW-A3R5-06 10 73104007 73104007 C A SLC29A3 Silent p.P114P 0.27 TCGA-FW-A3R5-06 10 73122030 73122030 C T SLC29A3 Missense_Mutation p.L365F 0.24 deleterious(0.01) possibly_damaging(0.601) TCGA-FW-A3R5-06 10 73122195 73122195 T G SLC29A3 Missense_Mutation p.S420A 0.26 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 10 73206137 73206137 G A CDH23 Missense_Mutation p.E44K 0.35 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 10 73405711 73405711 G A CDH23 Missense_Mutation p.E14K 0.29 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 73434899 73434899 G A CDH23 Missense_Mutation p.E86K 0.23 tolerated(0.58) benign(0.006) TCGA-FW-A3R5-06 10 73447448 73447448 C T CDH23 Silent p.F269F 0.56 TCGA-FW-A3R5-06 10 73462316 73462316 C T CDH23 Silent p.P458P 0.24 TCGA-FW-A3R5-06 10 73464772 73464772 G A CDH23 Silent p.V538V 0.29 TCGA-FW-A3R5-06 10 73464826 73464826 G A CDH23 Silent p.R556R 0.29 TCGA-FW-A3R5-06 10 73464832 73464832 G A CDH23 Silent p.V558V 0.40 TCGA-FW-A3R5-06 10 73464833 73464833 G A CDH23 Missense_Mutation p.A559T 0.39 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 73472451 73472451 G A C10orf105 3'UTR 0.20 TCGA-FW-A3R5-06 10 73485203 73485203 G A CDH23 Missense_Mutation p.E1174K 0.23 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 10 73490351 73490351 C T CDH23 Silent p.D1240D 0.15 TCGA-FW-A3R5-06 10 73544822 73544822 G A CDH23 Missense_Mutation p.G1898S 0.31 deleterious(0.02) benign(0.135) TCGA-FW-A3R5-06 10 73544831 73544831 G A CDH23 Missense_Mutation p.E1901K 0.14 tolerated(0.35) benign(0.025) TCGA-FW-A3R5-06 10 73545474 73545474 G A CDH23 Silent p.E1938E 0.19 TCGA-FW-A3R5-06 10 73558989 73558989 C T CDH23 Silent p.I152I 0.10 TCGA-FW-A3R5-06 10 73563112 73563112 G A CDH23 Missense_Mutation p.D363N 0.20 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 10 73574719 73574719 C T CDH23 Missense_Mutation p.T1010I 0.21 deleterious_low_confidence(0.02) benign(0.002) TCGA-FW-A3R5-06 10 73591668 73591668 G A PSAP Missense_Mutation p.P62S 0.27 deleterious(0.03) possibly_damaging(0.687) TCGA-FW-A3R5-06 10 73768064 73768064 C T CHST3 Silent p.F425F 0.50 TCGA-FW-A3R5-06 10 73822580 73822580 C T SPOCK2 Missense_Mutation p.E405K 0.25 tolerated(0.64) unknown(0) TCGA-FW-A3R5-06 10 73983730 73983730 G T ANAPC16 Nonsense_Mutation p.G20* 0.30 TCGA-FW-A3R5-06 10 74167714 74167714 G A MICU1 Missense_Mutation p.H385Y 0.21 tolerated(0.09) benign(0.222) TCGA-FW-A3R5-06 10 74619011 74619011 C T MCU Silent p.F99F 0.28 TCGA-FW-A3R5-06 10 74658705 74658705 G A OIT3 Nonsense_Mutation p.W115* 0.29 TCGA-FW-A3R5-06 10 74673193 74673193 C T OIT3 Silent p.L306L 0.32 TCGA-FW-A3R5-06 10 74684153 74684153 G A OIT3 Missense_Mutation p.R373Q 0.27 tolerated(0.37) benign(0.105) TCGA-FW-A3R5-06 10 74692164 74692164 C T OIT3 Missense_Mutation p.S507F 0.25 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 10 74695247 74695247 C T PLA2G12B 3'UTR 0.57 TCGA-FW-A3R5-06 10 74695422 74695422 G A PLA2G12B Nonsense_Mutation p.Q181* 0.32 TCGA-FW-A3R5-06 10 74700994 74700994 G A PLA2G12B Silent p.F133F 0.20 TCGA-FW-A3R5-06 10 74714293 74714293 C T PLA2G12B Missense_Mutation p.D51N 0.28 tolerated(0.8) possibly_damaging(0.572) TCGA-FW-A3R5-06 10 74714335 74714335 G A PLA2G12B Missense_Mutation p.R37W 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-FW-A3R5-06 10 74831805 74831805 G A P4HA1 Missense_Mutation p.L103F 0.24 tolerated(0.07) possibly_damaging(0.521) TCGA-FW-A3R5-06 10 75051124 75051124 C T TTC18 Missense_Mutation p.R770Q 0.33 tolerated(0.77) benign(0.001) TCGA-FW-A3R5-06 10 75051446 75051446 C T TTC18 Missense_Mutation p.D728N 0.29 tolerated(0.15) probably_damaging(0.994) TCGA-FW-A3R5-06 10 75056732 75056732 G A TTC18 Intron 0.16 TCGA-FW-A3R5-06 10 75069974 75069974 C T TTC18 Missense_Mutation p.E470K 0.28 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 10 75113409 75113409 G A TTC18 Missense_Mutation p.P52L 0.18 tolerated(0.07) benign(0.128) TCGA-FW-A3R5-06 10 75184446 75184446 G A MSS51 Silent p.S416S 0.09 TCGA-FW-A3R5-06 10 75289544 75289544 G A USP54 Missense_Mutation p.P652S 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 10 75290181 75290181 G A USP54 Silent p.I516I 0.20 TCGA-FW-A3R5-06 10 75391677 75391677 G A MYOZ1 3'UTR 0.22 TCGA-FW-A3R5-06 10 75399765 75399765 G A MYOZ1 Missense_Mutation p.S4L 0.12 tolerated(0.15) possibly_damaging(0.739) TCGA-FW-A3R5-06 10 75406808 75406808 G A SYNPO2L Missense_Mutation p.P868S 0.26 tolerated(0.15) benign(0.027) TCGA-FW-A3R5-06 10 75408259 75408259 G A SYNPO2L Missense_Mutation p.S384F 0.17 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 75408264 75408264 C T SYNPO2L Silent p.E382E 0.25 TCGA-FW-A3R5-06 10 75408412 75408412 G A SYNPO2L Missense_Mutation p.S333F 0.21 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 75408420 75408420 C T SYNPO2L Silent p.T330T 0.30 TCGA-FW-A3R5-06 10 75550745 75550745 C T ZSWIM8 Silent p.S318S 0.27 TCGA-FW-A3R5-06 10 75567892 75567892 G A NDST2 Silent p.P85P 0.36 TCGA-FW-A3R5-06 10 75673453 75673453 C T PLAU Missense_Mutation p.T206I 0.23 tolerated(0.4) benign(0.079) TCGA-FW-A3R5-06 10 75674610 75674610 G A PLAU Silent p.S302S 0.29 TCGA-FW-A3R5-06 10 75676148 75676148 G A PLAU Missense_Mutation p.G374E 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 7611736 7611736 G A ITIH5 Missense_Mutation p.P682S 0.21 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 10 7618552 7618552 G A ITIH5 Silent p.F614F 0.28 TCGA-FW-A3R5-06 10 7621800 7621800 G A ITIH5 Silent p.L446L 0.26 TCGA-FW-A3R5-06 10 7621837 7621837 G A ITIH5 Silent p.I433I 0.27 TCGA-FW-A3R5-06 10 7621969 7621969 G A ITIH5 Silent p.A389A 0.21 TCGA-FW-A3R5-06 10 76468256 76468256 C T ADK 3'Flank 0.33 TCGA-FW-A3R5-06 10 76732370 76732370 C T KAT6B Missense_Mutation p.P345L 0.25 probably_damaging(0.999) TCGA-FW-A3R5-06 10 76735651 76735651 C T KAT6B Missense_Mutation p.P519L 0.28 benign(0.217) TCGA-FW-A3R5-06 10 76739023 76739023 C T KAT6B Silent p.Y719Y 0.26 TCGA-FW-A3R5-06 10 76744936 76744936 C T KAT6B Silent p.F824F 0.14 TCGA-FW-A3R5-06 10 76790259 76790259 C T KAT6B Missense_Mutation p.P1893S 0.28 probably_damaging(0.998) TCGA-FW-A3R5-06 10 76790610 76790610 C T KAT6B Missense_Mutation p.H2010Y 0.07 probably_damaging(0.943) TCGA-FW-A3R5-06 10 7679435 7679435 C T ITIH5 Silent p.K136K 0.07 TCGA-FW-A3R5-06 10 76797674 76797674 C T DUPD1 Missense_Mutation p.E195K 0.38 tolerated(0.16) possibly_damaging(0.757) TCGA-FW-A3R5-06 10 76803681 76803681 C T DUPD1 Missense_Mutation p.D99N 0.35 tolerated(0.26) benign(0.004) TCGA-FW-A3R5-06 10 7683931 7683931 C T ITIH5 Silent p.Q86Q 0.36 TCGA-FW-A3R5-06 10 76868887 76868887 C T DUSP13 Missense_Mutation p.G10E 0.37 tolerated_low_confidence(0.62) benign(0) TCGA-FW-A3R5-06 10 76910586 76910586 C T SAMD8 Silent p.F100F 0.27 TCGA-FW-A3R5-06 10 77159218 77159218 G A ZNF503 Silent p.S410S 0.50 TCGA-FW-A3R5-06 10 7759687 7759687 G A ITIH2 Missense_Mutation p.R189K 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 10 7762923 7762923 G A ITIH2 Silent p.Q245Q 0.22 TCGA-FW-A3R5-06 10 7769021 7769021 G A ITIH2 Missense_Mutation p.A365T 0.23 deleterious(0) possibly_damaging(0.878) TCGA-FW-A3R5-06 10 7773905 7773905 A T ITIH2 Silent p.G531G 0.33 TCGA-FW-A3R5-06 10 7776939 7776939 G A ITIH2 Silent p.Q614Q 0.25 TCGA-FW-A3R5-06 10 78647111 78647111 G A KCNMA1 Silent p.S1191S 0.16 TCGA-FW-A3R5-06 10 78647157 78647157 G A KCNMA1 Missense_Mutation p.S1176F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 10 78647165 78647165 G A KCNMA1 Silent p.S1173S 0.27 TCGA-FW-A3R5-06 10 78846279 78846279 G A KCNMA1 Silent p.S469S 0.25 TCGA-FW-A3R5-06 10 78846280 78846280 G A KCNMA1 Missense_Mutation p.S469F 0.25 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 10 78943275 78943275 C T KCNMA1 Missense_Mutation p.D238N 0.21 tolerated(0.05) possibly_damaging(0.793) TCGA-FW-A3R5-06 10 78944602 78944602 G A KCNMA1 Silent p.F225F 0.25 TCGA-FW-A3R5-06 10 79572069 79572069 G A DLG5 Silent p.I1364I 0.20 TCGA-FW-A3R5-06 10 79579213 79579213 G A DLG5 Silent p.P1179P 0.12 TCGA-FW-A3R5-06 10 79579761 79579761 G A DLG5 Missense_Mutation p.P1140S 0.19 tolerated(0.43) benign(0.006) TCGA-FW-A3R5-06 10 79793556 79793556 C T RPS24 5'UTR 0.26 TCGA-FW-A3R5-06 10 79795386 79795386 C T RPS24 Missense_Mutation p.H63Y 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.566) TCGA-FW-A3R5-06 10 8006979 8006979 C T TAF3 Silent p.P502P 0.28 TCGA-FW-A3R5-06 10 8051146 8051146 C T TAF3 Silent p.L807L 0.42 TCGA-FW-A3R5-06 10 8097852 8097852 C T GATA3 Silent p.T78T 0.40 TCGA-FW-A3R5-06 10 8100268 8100268 G A GATA3 Missense_Mutation p.G81E 0.35 deleterious(0.02) possibly_damaging(0.53) TCGA-FW-A3R5-06 10 8100330 8100330 G A GATA3 Missense_Mutation p.A102T 0.21 deleterious(0.01) benign(0.087) TCGA-FW-A3R5-06 10 8100754 8100754 C T GATA3 Missense_Mutation p.S243F 0.30 deleterious(0.01) possibly_damaging(0.837) TCGA-FW-A3R5-06 10 81050844 81050844 C T ZMIZ1 Silent p.F223F 0.35 TCGA-FW-A3R5-06 10 81053203 81053203 C T ZMIZ1 Silent p.S341S 0.18 TCGA-FW-A3R5-06 10 81056306 81056306 C T ZMIZ1 Missense_Mutation p.P437S 0.34 benign(0.002) TCGA-FW-A3R5-06 10 81065942 81065942 C T ZMIZ1 Missense_Mutation p.P837S 0.31 benign(0.404) TCGA-FW-A3R5-06 10 81113656 81113656 C T PPIF 3'UTR 0.32 TCGA-FW-A3R5-06 10 8111504 8111504 G A GATA3 Silent p.R331R 0.35 TCGA-FW-A3R5-06 10 8115917 8115917 G A GATA3 Silent p.P422P 0.26 TCGA-FW-A3R5-06 10 8116018 8116018 G A GATA3 3'UTR 0.25 TCGA-FW-A3R5-06 10 8116086 8116086 G A GATA3 3'UTR 0.55 TCGA-FW-A3R5-06 10 81192318 81192318 G A ZCCHC24 Missense_Mutation p.P148L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 81272723 81272723 G A EIF5AL1 Silent p.G106G 0.10 TCGA-FW-A3R5-06 10 81272724 81272724 G A EIF5AL1 Missense_Mutation p.E107K 0.10 tolerated(0.11) benign(0.14) TCGA-FW-A3R5-06 10 81272747 81272747 C T EIF5AL1 Silent p.L114L 0.14 TCGA-FW-A3R5-06 10 81272760 81272760 C T EIF5AL1 Missense_Mutation p.L119F 0.08 deleterious(0.02) benign(0.139) TCGA-FW-A3R5-06 10 81272973 81272973 C T EIF5AL1 3'UTR 0.23 TCGA-FW-A3R5-06 10 81372163 81372163 G A SFTPA1 Missense_Mutation p.E105K 0.06 tolerated(0.06) benign(0.019) TCGA-FW-A3R5-06 10 81372178 81372178 G A SFTPA1 Missense_Mutation p.G110S 0.58 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 10 81373758 81373758 C T SFTPA1 Silent p.Y227Y 0.33 TCGA-FW-A3R5-06 10 81373870 81373870 G A SFTPA1 3'UTR 0.17 TCGA-FW-A3R5-06 10 81680793 81680793 G A MBL1P RNA 0.38 TCGA-FW-A3R5-06 10 81697498 81697498 C T SFTPD 3'UTR 0.25 TCGA-FW-A3R5-06 10 81697726 81697726 C T SFTPD Nonsense_Mutation p.W337* 0.27 TCGA-FW-A3R5-06 10 81697756 81697756 G A SFTPD Missense_Mutation p.P327L 0.27 tolerated(0.39) benign(0.068) TCGA-FW-A3R5-06 10 81697929 81697929 G A SFTPD Silent p.G269G 0.27 TCGA-FW-A3R5-06 10 81700458 81700458 C T SFTPD Intron 0.13 TCGA-FW-A3R5-06 10 81702170 81702170 C T SFTPD Missense_Mutation p.G136D 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 10 81702197 81702197 C T SFTPD Missense_Mutation p.G127E 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 10 81702588 81702588 G A SFTPD Missense_Mutation p.P83S 0.31 tolerated(0.08) probably_damaging(0.96) TCGA-FW-A3R5-06 10 81706230 81706230 C T SFTPD Silent p.E62E 0.34 TCGA-FW-A3R5-06 10 81903997 81903997 G A PLAC9 Missense_Mutation p.D61N 0.26 deleterious(0) benign(0.047) TCGA-FW-A3R5-06 10 82043754 82043754 C T MAT1A Silent p.E70E 0.22 TCGA-FW-A3R5-06 10 82098192 82098192 G A DYDC1 Intron 0.24 TCGA-FW-A3R5-06 10 82122265 82122265 G A DYDC2 Silent p.A36A 0.32 TCGA-FW-A3R5-06 10 82122300 82122300 C T DYDC2 Missense_Mutation p.A48V 0.19 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 82126582 82126582 C T DYDC2 Missense_Mutation p.P151S 0.28 tolerated(0.25) benign(0.11) TCGA-FW-A3R5-06 10 82280460 82280460 C T TSPAN14 3'UTR 0.30 TCGA-FW-A3R5-06 10 82363438 82363438 C T SH2D4B Silent p.V249V 0.24 TCGA-FW-A3R5-06 10 82403924 82403924 C T SH2D4B 3'UTR 0.23 TCGA-FW-A3R5-06 10 84745414 84745414 G A NRG3 3'Flank 0.21 TCGA-FW-A3R5-06 10 85904638 85904638 C T GHITM Missense_Mutation p.P117S 0.10 deleterious(0.03) possibly_damaging(0.831) TCGA-FW-A3R5-06 10 85970858 85970858 C T CDHR1 Silent p.S474S 0.31 TCGA-FW-A3R5-06 10 85971439 85971439 G A CDHR1 Silent p.V507V 0.31 TCGA-FW-A3R5-06 10 85973846 85973846 C T CDHR1 Silent p.S683S 0.31 TCGA-FW-A3R5-06 10 85974125 85974125 G A CDHR1 Silent p.E776E 0.31 TCGA-FW-A3R5-06 10 85981656 85981656 C T LRIT2 3'UTR 0.15 TCGA-FW-A3R5-06 10 85981972 85981972 C T LRIT2 Missense_Mutation p.D453N 0.27 deleterious(0.04) benign(0.178) TCGA-FW-A3R5-06 10 85984100 85984100 C T LRIT2 Missense_Mutation p.R294K 0.11 tolerated(0.14) possibly_damaging(0.823) TCGA-FW-A3R5-06 10 85984115 85984115 G A LRIT2 Missense_Mutation p.P289L 0.30 deleterious(0.04) benign(0.071) TCGA-FW-A3R5-06 10 85984557 85984557 G A LRIT2 Missense_Mutation p.L142F 0.15 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 10 85984599 85984599 G A LRIT2 Missense_Mutation p.L128F 0.25 tolerated(0.38) benign(0.005) TCGA-FW-A3R5-06 10 85984756 85984756 G A LRIT2 Silent p.F75F 0.10 TCGA-FW-A3R5-06 10 85985238 85985238 G T LRIT2 Silent p.V13V 0.26 TCGA-FW-A3R5-06 10 85992412 85992412 C T LRIT1 Silent p.R381R 0.25 TCGA-FW-A3R5-06 10 85992447 85992447 C T LRIT1 Missense_Mutation p.E370K 0.30 tolerated(0.2) benign(0.137) TCGA-FW-A3R5-06 10 85997276 85997276 C T LRIT1 Missense_Mutation p.E97K 0.39 tolerated(0.25) benign(0.107) TCGA-FW-A3R5-06 10 85997426 85997426 C T LRIT1 Missense_Mutation p.D47N 0.24 deleterious(0.04) probably_damaging(0.975) TCGA-FW-A3R5-06 10 86008723 86008723 G A RGR Silent p.Q98Q 0.15 TCGA-FW-A3R5-06 10 861007 861007 G A LARP4B Missense_Mutation p.L567F 0.30 deleterious(0.05) benign(0.344) TCGA-FW-A3R5-06 10 871741 871741 G A LARP4B Missense_Mutation p.P399S 0.17 tolerated(0.22) probably_damaging(0.971) TCGA-FW-A3R5-06 10 87362036 87362036 G A GRID1 Silent p.S1008S 0.35 TCGA-FW-A3R5-06 10 87373167 87373167 C T GRID1 Silent p.K866K 0.29 TCGA-FW-A3R5-06 10 87373272 87373272 G A GRID1 Silent p.F831F 0.28 TCGA-FW-A3R5-06 10 87407230 87407230 G A GRID1 Intron 0.46 TCGA-FW-A3R5-06 10 87487623 87487623 G A GRID1 Missense_Mutation p.L508F 0.20 deleterious(0.03) benign(0.428) TCGA-FW-A3R5-06 10 87487747 87487747 G A GRID1 Silent p.F466F 0.14 TCGA-FW-A3R5-06 10 87487804 87487804 C T GRID1 Silent p.E447E 0.28 TCGA-FW-A3R5-06 10 87489305 87489305 G A GRID1 Missense_Mutation p.L434F 0.28 tolerated(0.17) benign(0.319) TCGA-FW-A3R5-06 10 87614323 87614323 G A GRID1 Missense_Mutation p.S388L 0.29 tolerated(0.19) benign(0.419) TCGA-FW-A3R5-06 10 87615822 87615822 C T GRID1 Nonsense_Mutation p.W359* 0.10 TCGA-FW-A3R5-06 10 87966146 87966146 G A GRID1 Silent p.F165F 0.09 TCGA-FW-A3R5-06 10 88123744 88123744 G A GRID1 Silent p.S63S 0.28 TCGA-FW-A3R5-06 10 88211809 88211809 G A WAPAL Missense_Mutation p.S1010F 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 10 88418324 88418324 C T OPN4 Silent p.L181L 0.15 TCGA-FW-A3R5-06 10 88761427 88761427 C T RP11-96C23.14 RNA 0.33 TCGA-FW-A3R5-06 10 88761443 88761443 C T RP11-96C23.14 RNA 0.31 TCGA-FW-A3R5-06 10 88761493 88761493 C T RP11-96C23.14 Intron 0.31 TCGA-FW-A3R5-06 10 88764104 88764104 C T RP11-96C23.14 RNA 0.29 TCGA-FW-A3R5-06 10 88768356 88768356 G A RP11-96C23.10 3'Flank 0.27 TCGA-FW-A3R5-06 10 88769257 88769257 G A RP11-96C23.10 3'Flank 0.27 TCGA-FW-A3R5-06 10 88769450 88769450 G A RP11-96C23.10 3'Flank 0.30 TCGA-FW-A3R5-06 10 88818945 88818945 G A GLUD1 Missense_Mutation p.T455I 0.26 deleterious(0.02) benign(0.216) TCGA-FW-A3R5-06 10 88988177 88988177 C T NUTM2A Silent p.T180T 0.13 TCGA-FW-A3R5-06 10 89127097 89127097 C T NUTM2D Missense_Mutation p.P548S 0.26 tolerated_low_confidence(0.17) possibly_damaging(0.483) TCGA-FW-A3R5-06 10 89127142 89127142 C T NUTM2D 3'UTR 0.29 TCGA-FW-A3R5-06 10 90356112 90356112 C T LIPJ Missense_Mutation p.S172F 0.28 deleterious(0.01) benign(0.104) TCGA-FW-A3R5-06 10 90427414 90427414 C T LIPF Missense_Mutation p.P75L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 90431583 90431583 C T LIPF Intron 0.09 TCGA-FW-A3R5-06 10 90433383 90433383 C T LIPF Silent p.F246F 0.35 TCGA-FW-A3R5-06 10 90435980 90435980 G A LIPF Silent p.G311G 0.18 TCGA-FW-A3R5-06 10 90492287 90492287 C T LIPK Silent p.T216T 0.21 TCGA-FW-A3R5-06 10 90582641 90582641 G A ANKRD22 3'UTR 0.36 TCGA-FW-A3R5-06 10 90588376 90588376 G A ANKRD22 Silent p.F87F 0.29 TCGA-FW-A3R5-06 10 90673158 90673158 C T STAMBPL1 Missense_Mutation p.H241Y 0.33 deleterious(0.04) benign(0.001) TCGA-FW-A3R5-06 10 90695041 90695041 C T ACTA2 Nonsense_Mutation p.W358* 0.06 TCGA-FW-A3R5-06 10 90762815 90762815 C T FAS Silent p.S20S 0.25 TCGA-FW-A3R5-06 10 90770529 90770529 G A FAS Silent p.G175G 0.19 TCGA-FW-A3R5-06 10 90966300 90966300 G A CH25H Silent p.F250F 0.54 TCGA-FW-A3R5-06 10 90966983 90966983 G A CH25H Missense_Mutation p.L23F 0.50 tolerated(0.21) benign(0.055) TCGA-FW-A3R5-06 10 91143629 91143629 C T IFIT1B Missense_Mutation p.R187C 0.33 deleterious(0) benign(0.337) TCGA-FW-A3R5-06 10 91144246 91144246 G A IFIT1B Silent p.G392G 0.27 TCGA-FW-A3R5-06 10 91198420 91198420 G A SLC16A12 Silent p.S323S 0.17 TCGA-FW-A3R5-06 10 91198523 91198523 G A SLC16A12 Missense_Mutation p.S289F 0.30 tolerated(0.22) probably_damaging(1) TCGA-FW-A3R5-06 10 91469768 91469768 C T KIF20B Missense_Mutation p.R146C 0.34 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 10 92680829 92680829 C T ANKRD1 5'UTR 0.28 TCGA-FW-A3R5-06 10 93390138 93390138 C T PPP1R3C Missense_Mutation p.R167Q 0.26 tolerated(0.05) probably_damaging(0.943) TCGA-FW-A3R5-06 10 93742422 93742422 C T BTAF1 Silent p.S709S 0.30 TCGA-FW-A3R5-06 10 93902842 93902842 G A CPEB3 Missense_Mutation p.P466L 0.28 tolerated(0.06) possibly_damaging(0.772) TCGA-FW-A3R5-06 10 93902843 93902843 G A CPEB3 Missense_Mutation p.P466S 0.29 tolerated(0.33) benign(0.247) TCGA-FW-A3R5-06 10 93902868 93902868 G A CPEB3 Silent p.I457I 0.27 TCGA-FW-A3R5-06 10 94109519 94109519 C T MARCH5 Silent p.V215V 0.35 TCGA-FW-A3R5-06 10 94297234 94297234 G A IDE Missense_Mutation p.P58S 0.07 tolerated(0.39) benign(0.003) TCGA-FW-A3R5-06 10 94653169 94653169 C T EXOC6 Silent p.I55I 0.30 TCGA-FW-A3R5-06 10 94708030 94708030 G A EXOC6 Splice_Site p.X437_splice 0.41 TCGA-FW-A3R5-06 10 94797 94797 C T TUBB8 Missense_Mutation p.G38E 0.33 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-FW-A3R5-06 10 95069791 95069791 G A MYOF Missense_Mutation p.L2045F 0.37 tolerated(0.18) benign(0.047) TCGA-FW-A3R5-06 10 95132727 95132727 G A MYOF Missense_Mutation p.S806F 0.06 deleterious(0) benign(0.427) TCGA-FW-A3R5-06 10 95159188 95159188 G A MYOF Silent p.L394L 0.31 TCGA-FW-A3R5-06 10 95335847 95335847 G A FFAR4 Splice_Site p.X190_splice 0.32 TCGA-FW-A3R5-06 10 95347003 95347003 C T FFAR4 Silent p.L257L 0.32 TCGA-FW-A3R5-06 10 95347184 95347184 C T FFAR4 Missense_Mutation p.L318F 0.19 tolerated(0.18) benign(0.013) TCGA-FW-A3R5-06 10 95372364 95372364 G A PDE6C 5'UTR 0.24 TCGA-FW-A3R5-06 10 95372892 95372892 C T PDE6C Missense_Mutation p.P137L 0.15 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 10 95380460 95380460 C T PDE6C Silent p.I184I 0.28 TCGA-FW-A3R5-06 10 95422344 95422344 G A PDE6C Missense_Mutation p.E771K 0.21 deleterious(0) benign(0.422) TCGA-FW-A3R5-06 10 95518576 95518576 C T LGI1 Missense_Mutation p.S92L 0.35 tolerated(0.33) benign(0.009) TCGA-FW-A3R5-06 10 95549901 95549901 C T LGI1 Silent p.F159F 0.26 TCGA-FW-A3R5-06 10 95552654 95552654 G A LGI1 Missense_Mutation p.D220N 0.29 tolerated(0.25) benign(0.134) TCGA-FW-A3R5-06 10 95557267 95557267 G A LGI1 Missense_Mutation p.G461R 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-FW-A3R5-06 10 95557662 95557662 C T LGI1 3'UTR 0.25 TCGA-FW-A3R5-06 10 95660749 95660749 C T SLC35G1 Silent p.I200I 0.29 TCGA-FW-A3R5-06 10 95660812 95660812 C T SLC35G1 Silent p.H221H 0.38 TCGA-FW-A3R5-06 10 95718849 95718849 C T PIPSL RNA 0.30 TCGA-FW-A3R5-06 10 95719456 95719456 C T PIPSL RNA 0.32 TCGA-FW-A3R5-06 10 95790940 95790940 G A PLCE1 Missense_Mutation p.R46Q 0.28 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 10 95791225 95791225 C T PLCE1 Missense_Mutation p.P141L 0.29 tolerated_low_confidence(0.09) benign(0.005) TCGA-FW-A3R5-06 10 95791484 95791484 G A PLCE1 Silent p.K227K 0.19 TCGA-FW-A3R5-06 10 95791659 95791659 G A PLCE1 Missense_Mutation p.D286N 0.19 tolerated_low_confidence(0.82) benign(0.002) TCGA-FW-A3R5-06 10 95791924 95791924 C T PLCE1 Missense_Mutation p.P374L 0.22 tolerated_low_confidence(0.06) benign(0.075) TCGA-FW-A3R5-06 10 96014663 96014663 C T PLCE1 Silent p.I1137I 0.29 TCGA-FW-A3R5-06 10 96025687 96025687 G A PLCE1 Missense_Mutation p.G1418E 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 10 96028737 96028737 G A PLCE1 Missense_Mutation p.D1445N 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 10 96039715 96039715 G A PLCE1 Intron 0.12 TCGA-FW-A3R5-06 10 96267073 96267073 C T TBC1D12 Silent p.F523F 0.15 TCGA-FW-A3R5-06 10 96447569 96447569 C T CYP2C18 Silent p.L71L 0.10 TCGA-FW-A3R5-06 10 96466679 96466679 C T CYP2C18 Missense_Mutation p.R261W 0.32 deleterious(0.02) benign(0.255) TCGA-FW-A3R5-06 10 96495170 96495170 C T CYP2C18 Missense_Mutation p.P481L 0.11 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 10 96522620 96522620 C T CYP2C19 Missense_Mutation p.S53F 0.31 deleterious(0.02) possibly_damaging(0.502) TCGA-FW-A3R5-06 10 96602718 96602718 C T CYP2C19 Silent p.I362I 0.23 TCGA-FW-A3R5-06 10 96602719 96602719 C T CYP2C19 Missense_Mutation p.P363S 0.22 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 10 96602760 96602760 C T CYP2C19 Silent p.F376F 0.22 TCGA-FW-A3R5-06 10 96609693 96609693 C T CYP2C19 Missense_Mutation p.S390F 0.30 tolerated(0.4) possibly_damaging(0.86) TCGA-FW-A3R5-06 10 96612497 96612497 G A CYP2C19 Silent p.R433R 0.26 TCGA-FW-A3R5-06 10 96698454 96698454 G A CYP2C9 Silent p.V5V 0.28 TCGA-FW-A3R5-06 10 96698514 96698514 G A CYP2C9 Silent p.G25G 0.06 TCGA-FW-A3R5-06 10 96698548 96698548 C T CYP2C9 Missense_Mutation p.P37S 0.26 deleterious(0) possibly_damaging(0.894) TCGA-FW-A3R5-06 10 96701966 96701966 G A CYP2C9 Missense_Mutation p.G117R 0.34 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 10 96702033 96702033 G A CYP2C9 Missense_Mutation p.R139K 0.30 tolerated(0.38) benign(0.096) TCGA-FW-A3R5-06 10 96702058 96702058 G A CYP2C9 Silent p.E147E 0.17 TCGA-FW-A3R5-06 10 96745809 96745809 C T CYP2C9 Missense_Mutation p.S390F 0.25 tolerated(0.39) possibly_damaging(0.895) TCGA-FW-A3R5-06 10 96745889 96745889 G A CYP2C9 Missense_Mutation p.G417S 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-FW-A3R5-06 10 96824616 96824616 G A CYP2C8 Missense_Mutation p.L195F 0.20 deleterious(0.01) benign(0.302) TCGA-FW-A3R5-06 10 96827076 96827076 G A CYP2C8 Missense_Mutation p.R124W 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-FW-A3R5-06 10 96827087 96827087 C T CYP2C8 Nonsense_Mutation p.W120* 0.36 TCGA-FW-A3R5-06 10 96827096 96827096 C T CYP2C8 Missense_Mutation p.G117E 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 10 96827110 96827110 G A CYP2C8 Silent p.I112I 0.29 TCGA-FW-A3R5-06 10 96827222 96827222 G A CYP2C8 Intron 0.27 TCGA-FW-A3R5-06 10 96967005 96967005 G A C10orf129 Silent p.K148K 0.12 TCGA-FW-A3R5-06 10 96967012 96967012 C T C10orf129 Missense_Mutation p.R151C 0.19 deleterious(0.04) benign(0.263) TCGA-FW-A3R5-06 10 96970493 96970493 C T C10orf129 Missense_Mutation p.P233L 0.29 deleterious(0.03) probably_damaging(0.97) TCGA-FW-A3R5-06 10 96970536 96970536 C T C10orf129 Silent p.F247F 0.25 TCGA-FW-A3R5-06 10 96971644 96971644 G A C10orf129 Missense_Mutation p.M255I 0.21 deleterious(0.03) benign(0.163) TCGA-FW-A3R5-06 10 96971650 96971650 C T C10orf129 Silent p.L257L 0.35 TCGA-FW-A3R5-06 10 96971770 96971770 C T C10orf129 Silent p.F297F 0.29 TCGA-FW-A3R5-06 10 97006991 97006991 G A PDLIM1 Silent p.I222I 0.33 TCGA-FW-A3R5-06 10 97143773 97143773 G A SORBS1 Missense_Mutation p.R503C 0.28 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 10 97170471 97170471 G A SORBS1 Missense_Mutation p.P292S 0.20 tolerated_low_confidence(0.34) benign(0.002) TCGA-FW-A3R5-06 10 97192238 97192238 G A SORBS1 Missense_Mutation p.P90S 0.17 tolerated_low_confidence(0.15) probably_damaging(0.999) TCGA-FW-A3R5-06 10 97192281 97192281 G A SORBS1 Silent p.A75A 0.39 TCGA-FW-A3R5-06 10 97604280 97604280 G A ENTPD1 Missense_Mutation p.R166K 0.08 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 10 97620289 97620289 G A ENTPD1 Missense_Mutation p.E392K 0.28 tolerated(0.2) benign(0.002) TCGA-FW-A3R5-06 10 97779519 97779519 G A CC2D2B Missense_Mutation p.E240K 0.27 tolerated(0.19) probably_damaging(0.981) TCGA-FW-A3R5-06 10 97779603 97779603 G A CC2D2B Intron 0.18 TCGA-FW-A3R5-06 10 97918838 97918838 C T ZNF518A RNA 0.09 TCGA-FW-A3R5-06 10 97919993 97919993 C T ZNF518A RNA 0.32 TCGA-FW-A3R5-06 10 97920070 97920070 C T ZNF518A RNA 0.33 TCGA-FW-A3R5-06 10 97920544 97920544 C T ZNF518A RNA 0.47 TCGA-FW-A3R5-06 10 97987291 97987291 G A BLNK Missense_Mutation p.S79L 0.10 deleterious(0.02) benign(0.051) TCGA-FW-A3R5-06 10 97990571 97990571 C T BLNK Silent p.E61E 0.22 TCGA-FW-A3R5-06 10 98002508 98002508 C T BLNK Missense_Mutation p.R49Q 0.36 tolerated(0.79) benign(0.003) TCGA-FW-A3R5-06 10 98006765 98006765 C T BLNK Missense_Mutation p.G30S 0.15 tolerated(0.22) possibly_damaging(0.883) TCGA-FW-A3R5-06 10 98006768 98006768 C T BLNK Missense_Mutation p.E29K 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 10 98084132 98084132 G A DNTT Missense_Mutation p.R287Q 0.23 tolerated(0.48) benign(0.015) TCGA-FW-A3R5-06 10 98105809 98105809 C T OPALIN Silent p.V105V 0.26 TCGA-FW-A3R5-06 10 98108055 98108055 C T OPALIN Silent p.K80K 0.20 TCGA-FW-A3R5-06 10 98144361 98144361 C T TLL2 Missense_Mutation p.R726K 0.29 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 10 98146820 98146820 G A TLL2 Missense_Mutation p.S581F 0.27 deleterious(0.01) possibly_damaging(0.828) TCGA-FW-A3R5-06 10 98155083 98155083 C T TLL2 Silent p.T529T 0.29 TCGA-FW-A3R5-06 10 98155765 98155765 C T TLL2 Missense_Mutation p.G466E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 98155766 98155766 C T TLL2 Missense_Mutation p.G466R 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 98192614 98192614 C T TLL2 Missense_Mutation p.R157K 0.25 deleterious(0.03) possibly_damaging(0.516) TCGA-FW-A3R5-06 10 98355350 98355350 G A PIK3AP1 Missense_Mutation p.P801L 0.29 deleterious(0) benign(0) TCGA-FW-A3R5-06 10 98363806 98363806 C T PIK3AP1 Missense_Mutation p.S724N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 10 98369528 98369528 G A PIK3AP1 Missense_Mutation p.P704L 0.29 tolerated(0.19) probably_damaging(0.999) TCGA-FW-A3R5-06 10 98408551 98408551 G A PIK3AP1 Silent p.N350N 0.18 TCGA-FW-A3R5-06 10 98715483 98715483 C T LCOR Missense_Mutation p.S369F 0.38 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 10 98743903 98743903 C T C10orf12 Missense_Mutation p.S919L 0.31 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 10 98744436 98744436 C T C10orf12 Missense_Mutation p.P1097S 0.13 tolerated(0.8) benign(0.003) TCGA-FW-A3R5-06 10 98763931 98763931 G A SLIT1 Silent p.A1253A 0.18 TCGA-FW-A3R5-06 10 98764462 98764462 G A SLIT1 Missense_Mutation p.S1233F 0.21 deleterious(0) possibly_damaging(0.776) TCGA-FW-A3R5-06 10 98807467 98807467 G A SLIT1 Silent p.I538I 0.28 TCGA-FW-A3R5-06 10 98808818 98808818 G A SLIT1 Silent p.F453F 0.25 TCGA-FW-A3R5-06 10 98819884 98819884 G A SLIT1 Missense_Mutation p.P325S 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 10 98995059 98995059 G A ARHGAP19 Missense_Mutation p.S400L 0.28 deleterious(0.04) benign(0.044) TCGA-FW-A3R5-06 10 99052412 99052412 C T ARHGAP19 5'UTR 0.32 TCGA-FW-A3R5-06 10 99153491 99153491 G A RRP12 Silent p.S160S 0.23 TCGA-FW-A3R5-06 10 99343372 99343372 G A ANKRD2 Missense_Mutation p.A325T 0.38 tolerated(0.67) benign(0.005) TCGA-FW-A3R5-06 10 99349560 99349560 G A C10orf62 5'UTR 0.13 TCGA-FW-A3R5-06 10 99350007 99350007 C T C10orf62 Missense_Mutation p.S118F 0.37 deleterious(0) probably_damaging(0.943) TCGA-FW-A3R5-06 10 99512938 99512938 C T ZFYVE27 Silent p.F352F 0.32 TCGA-FW-A3R5-06 10 99527202 99527202 C T SFRP5 3'UTR 0.20 TCGA-FW-A3R5-06 10 99625472 99625472 C T CRTAC1 Splice_Site p.X607_splice 0.35 TCGA-FW-A3R5-06 10 99655718 99655718 C T CRTAC1 Missense_Mutation p.G414E 0.08 tolerated(0.05) possibly_damaging(0.894) TCGA-FW-A3R5-06 10 99655719 99655719 C T CRTAC1 Missense_Mutation p.G414R 0.08 deleterious(0.02) probably_damaging(0.925) TCGA-FW-A3R5-06 10 99968552 99968552 C T R3HCC1L Silent p.V227V 0.35 TCGA-FW-A3R5-06 11 100126602 100126602 C T CNTN5 Missense_Mutation p.L706F 0.36 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 11 100141898 100141898 C T CNTN5 Nonsense_Mutation p.R747* 0.27 TCGA-FW-A3R5-06 11 100169943 100169943 C T CNTN5 Missense_Mutation p.A812V 0.27 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 11 100226899 100226899 C T CNTN5 Missense_Mutation p.S1084L 0.21 tolerated(0.74) benign(0) TCGA-FW-A3R5-06 11 100226909 100226909 C G CNTN5 Silent p.V1087V 0.21 TCGA-FW-A3R5-06 11 100863137 100863137 C T TMEM133 Missense_Mutation p.P33L 0.24 tolerated_low_confidence(1) possibly_damaging(0.851) TCGA-FW-A3R5-06 11 100863138 100863138 C T TMEM133 Silent p.P33P 0.24 TCGA-FW-A3R5-06 11 100863262 100863262 C T TMEM133 Missense_Mutation p.P75S 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-FW-A3R5-06 11 100933186 100933186 G A PGR Missense_Mutation p.S735L 0.20 tolerated(0.15) benign(0.029) TCGA-FW-A3R5-06 11 100999520 100999520 C T PGR Silent p.R94R 0.22 TCGA-FW-A3R5-06 11 1011142 1011142 C T AP2A2 3'UTR 0.23 TCGA-FW-A3R5-06 11 101344485 101344485 G A TRPC6 Silent p.P588P 0.34 TCGA-FW-A3R5-06 11 101375429 101375429 G A TRPC6 Missense_Mutation p.R91C 0.28 deleterious(0.02) benign(0.003) TCGA-FW-A3R5-06 11 101765653 101765653 C T ANGPTL5 Silent p.T268T 0.26 TCGA-FW-A3R5-06 11 101765751 101765751 G A ANGPTL5 Nonsense_Mutation p.Q236* 0.23 TCGA-FW-A3R5-06 11 1017688 1017688 C T MUC6 Missense_Mutation p.E1705K 0.10 unknown(0) TCGA-FW-A3R5-06 11 101773360 101773360 G A ANGPTL5 Missense_Mutation p.P178S 0.31 tolerated(0.36) benign(0.095) TCGA-FW-A3R5-06 11 101776545 101776545 C T ANGPTL5 Missense_Mutation p.R92K 0.21 deleterious_low_confidence(0.05) benign(0.341) TCGA-FW-A3R5-06 11 101777979 101777979 C T ANGPTL5 Splice_Site p.X33_splice 0.38 TCGA-FW-A3R5-06 11 101815074 101815074 G A KIAA1377 Silent p.Q109Q 0.28 TCGA-FW-A3R5-06 11 101818765 101818765 C T KIAA1377 Missense_Mutation p.S133F 0.13 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 101834561 101834561 C T KIAA1377 Missense_Mutation p.P932L 0.30 tolerated(0.76) benign(0.02) TCGA-FW-A3R5-06 11 101868335 101868335 G A KIAA1377 Silent p.K1105K 0.08 TCGA-FW-A3R5-06 11 101951951 101951951 G A C11orf70 Missense_Mutation p.R205Q 0.20 tolerated(1) benign(0.013) TCGA-FW-A3R5-06 11 102201741 102201741 G A BIRC3 Missense_Mutation p.E365K 0.32 deleterious(0.02) benign(0.028) TCGA-FW-A3R5-06 11 102220766 102220766 C T BIRC2 Missense_Mutation p.P61S 0.17 tolerated(0.19) possibly_damaging(0.904) TCGA-FW-A3R5-06 11 102221052 102221052 T A BIRC2 Missense_Mutation p.L156H 0.17 deleterious(0.01) possibly_damaging(0.469) TCGA-FW-A3R5-06 11 102398304 102398304 C T MMP7 Silent p.R145R 0.29 TCGA-FW-A3R5-06 11 1023983 1023983 C T MUC6 Missense_Mutation p.G1116S 0.30 unknown(0) TCGA-FW-A3R5-06 11 102464199 102464199 G A MMP20 Silent p.T406T 0.41 TCGA-FW-A3R5-06 11 102477362 102477362 G A MMP20 Missense_Mutation p.P286L 0.24 deleterious(0.04) benign(0.101) TCGA-FW-A3R5-06 11 102480727 102480727 C T MMP20 Silent p.R186R 0.28 TCGA-FW-A3R5-06 11 102495961 102495961 G A MMP20 Silent p.S30S 0.29 TCGA-FW-A3R5-06 11 102495982 102495982 G A MMP20 Silent p.A23A 0.26 TCGA-FW-A3R5-06 11 102496012 102496012 G A MMP20 Silent p.L13L 0.26 TCGA-FW-A3R5-06 11 102496039 102496039 G A MMP20 Silent p.L4L 0.28 TCGA-FW-A3R5-06 11 102567208 102567208 C T MMP27 Missense_Mutation p.E266K 0.28 tolerated(0.6) benign(0) TCGA-FW-A3R5-06 11 102641523 102641523 C T MMP10 3'UTR 0.25 TCGA-FW-A3R5-06 11 102667464 102667464 G A MMP1 Nonsense_Mutation p.Q186* 0.31 TCGA-FW-A3R5-06 11 102668758 102668758 C T MMP1 Silent p.A22A 0.36 TCGA-FW-A3R5-06 11 102706710 102706710 G A MMP3 3'UTR 0.38 TCGA-FW-A3R5-06 11 102706733 102706733 C T MMP3 3'UTR 0.46 TCGA-FW-A3R5-06 11 102709863 102709863 C T MMP3 Silent p.K349K 0.41 TCGA-FW-A3R5-06 11 102709877 102709877 C T MMP3 Missense_Mutation p.E345K 0.26 deleterious(0) possibly_damaging(0.626) TCGA-FW-A3R5-06 11 102711167 102711167 G A MMP3 Silent p.S261S 0.34 TCGA-FW-A3R5-06 11 102711298 102711298 G A MMP3 Missense_Mutation p.H218Y 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 102712909 102712909 C T MMP3 Missense_Mutation p.E201K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 11 102713470 102713470 G A MMP3 Missense_Mutation p.P95S 0.30 deleterious(0.05) possibly_damaging(0.651) TCGA-FW-A3R5-06 11 102714185 102714185 C T MMP3 Missense_Mutation p.M31I 0.30 tolerated(0.27) benign(0.026) TCGA-FW-A3R5-06 11 102737049 102737049 T C MMP12 RNA 0.20 TCGA-FW-A3R5-06 11 102737123 102737123 G A MMP12 RNA 0.30 TCGA-FW-A3R5-06 11 102742443 102742443 C T MMP12 RNA 0.26 TCGA-FW-A3R5-06 11 102742658 102742658 C T MMP12 RNA 0.26 TCGA-FW-A3R5-06 11 102814921 102814921 C T MMP13 3'UTR 0.26 TCGA-FW-A3R5-06 11 102824912 102824912 C T MMP13 Missense_Mutation p.D204N 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 102825195 102825195 C T MMP13 Missense_Mutation p.G168E 0.24 tolerated(0.09) probably_damaging(1) TCGA-FW-A3R5-06 11 102826412 102826412 G A MMP13 Missense_Mutation p.A8V 0.19 tolerated(0.56) benign(0.002) TCGA-FW-A3R5-06 11 102992208 102992208 C T DYNC2H1 Missense_Mutation p.R490C 0.26 possibly_damaging(0.858) TCGA-FW-A3R5-06 11 103055700 103055700 C T DYNC2H1 Missense_Mutation p.H2185Y 0.25 benign(0.02) TCGA-FW-A3R5-06 11 103057133 103057133 C T DYNC2H1 Missense_Mutation p.P2266S 0.45 benign(0.085) TCGA-FW-A3R5-06 11 103057146 103057146 G A DYNC2H1 Missense_Mutation p.R2270Q 0.27 possibly_damaging(0.742) TCGA-FW-A3R5-06 11 103091352 103091352 C T DYNC2H1 Missense_Mutation p.P2983S 0.29 probably_damaging(0.998) TCGA-FW-A3R5-06 11 103173923 103173923 C T DYNC2H1 Missense_Mutation p.P3740S 0.20 probably_damaging(0.999) TCGA-FW-A3R5-06 11 1032042 1032042 C T MUC6 Missense_Mutation p.G43S 0.23 unknown(0) TCGA-FW-A3R5-06 11 103814264 103814264 C T PDGFD Missense_Mutation p.E230K 0.10 tolerated(0.08) benign(0.017) TCGA-FW-A3R5-06 11 103907979 103907979 C T DDI1 Silent p.P143P 0.30 TCGA-FW-A3R5-06 11 103908168 103908168 G A DDI1 Silent p.L206L 0.18 TCGA-FW-A3R5-06 11 103908370 103908370 G A DDI1 Missense_Mutation p.E274K 0.28 tolerated(0.05) benign(0.224) TCGA-FW-A3R5-06 11 103908686 103908686 C T DDI1 Missense_Mutation p.S379F 0.22 tolerated(0.06) benign(0.001) TCGA-FW-A3R5-06 11 103908728 103908728 G A DDI1 Missense_Mutation p.R393Q 0.14 tolerated_low_confidence(0.16) benign(0.003) TCGA-FW-A3R5-06 11 104774135 104774135 C T CASP12 5'Flank 0.23 TCGA-FW-A3R5-06 11 104817824 104817824 C T CASP4 Missense_Mutation p.E341K 0.26 deleterious(0.04) possibly_damaging(0.714) TCGA-FW-A3R5-06 11 104897581 104897581 T G CASP1 Missense_Mutation p.E368D 0.25 tolerated(0.16) benign(0.351) TCGA-FW-A3R5-06 11 104902005 104902005 G A CASP1 Missense_Mutation p.P114S 0.24 tolerated(0.6) benign(0.002) TCGA-FW-A3R5-06 11 104905297 104905297 G A CASP1 Intron 0.20 TCGA-FW-A3R5-06 11 104912255 104912255 G A CARD16 Missense_Mutation p.L156F 0.33 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-FW-A3R5-06 11 10514928 10514928 G A AMPD3 Missense_Mutation p.M333I 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 10555624 10555624 G A RNF141 Nonsense_Mutation p.R28* 0.33 TCGA-FW-A3R5-06 11 105769081 105769081 G A GRIA4 Missense_Mutation p.M271I 0.27 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 105774679 105774679 G A GRIA4 Missense_Mutation p.G342E 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 105797580 105797580 C T GRIA4 Missense_Mutation p.P654L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 105842748 105842748 G A GRIA4 Missense_Mutation p.G801E 0.26 tolerated(0.24) benign(0.085) TCGA-FW-A3R5-06 11 10602129 10602129 C T MRVI1 Missense_Mutation p.E790K 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 10615137 10615137 G A MRVI1 Missense_Mutation p.R693C 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 10615669 10615669 C T MRVI1 Intron 0.33 TCGA-FW-A3R5-06 11 10645331 10645331 C T MRVI1 Missense_Mutation p.E481K 0.20 deleterious(0.01) possibly_damaging(0.874) TCGA-FW-A3R5-06 11 10647978 10647978 G A MRVI1 Silent p.T301T 0.15 TCGA-FW-A3R5-06 11 10648094 10648094 C T MRVI1 Missense_Mutation p.D263N 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 106680917 106680917 G A GUCY1A2 Silent p.F498F 0.20 TCGA-FW-A3R5-06 11 106810341 106810341 G A GUCY1A2 Nonsense_Mutation p.R351* 0.38 TCGA-FW-A3R5-06 11 107506466 107506466 C T ELMOD1 Missense_Mutation p.P132L 0.23 tolerated(0.35) benign(0.009) TCGA-FW-A3R5-06 11 107673741 107673741 G A SLC35F2 Silent p.L309L 0.26 TCGA-FW-A3R5-06 11 1077677 1077677 C T MUC2 Missense_Mutation p.L143F 0.29 possibly_damaging(0.796) TCGA-FW-A3R5-06 11 10781819 10781819 G T CTR9 Missense_Mutation p.C231F 0.29 deleterious(0.01) benign(0.018) TCGA-FW-A3R5-06 11 108032498 108032498 G A NPAT Silent p.S1105S 0.28 TCGA-FW-A3R5-06 11 1081113 1081113 A G MUC2 Missense_Mutation p.E470G 0.14 probably_damaging(0.993) TCGA-FW-A3R5-06 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 108138014 108138014 C T ATM Silent p.Y861Y 0.24 TCGA-FW-A3R5-06 11 108202275 108202275 C T ATM Silent p.V2540V 0.22 TCGA-FW-A3R5-06 11 108256663 108256663 A G C11orf65 Silent p.S257S 0.07 TCGA-FW-A3R5-06 11 108256664 108256664 G A C11orf65 Missense_Mutation p.S257F 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 11 108380669 108380669 G A EXPH5 Silent p.L1855L 0.21 TCGA-FW-A3R5-06 11 108380691 108380691 C T EXPH5 Missense_Mutation p.R1848K 0.35 tolerated(0.14) benign(0.194) TCGA-FW-A3R5-06 11 108382640 108382640 G A EXPH5 Silent p.S1198S 0.29 TCGA-FW-A3R5-06 11 108383124 108383124 C T EXPH5 Missense_Mutation p.G1037E 0.29 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 11 108383284 108383284 C T EXPH5 Missense_Mutation p.E984K 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 108383741 108383741 C T EXPH5 Silent p.Q831Q 0.28 TCGA-FW-A3R5-06 11 108383934 108383934 T A EXPH5 Missense_Mutation p.K767I 0.30 deleterious(0.03) probably_damaging(0.935) TCGA-FW-A3R5-06 11 108383994 108383994 G A EXPH5 Missense_Mutation p.S747F 0.31 deleterious(0.03) benign(0.079) TCGA-FW-A3R5-06 11 108385508 108385508 G A EXPH5 Silent p.F242F 0.29 TCGA-FW-A3R5-06 11 1086331 1086331 G A MUC2 Missense_Mutation p.E1014K 0.41 possibly_damaging(0.73) TCGA-FW-A3R5-06 11 1092112 1092112 G A MUC2 Missense_Mutation p.E1311K 0.34 benign(0.145) TCGA-FW-A3R5-06 11 1092130 1092130 G A MUC2 Missense_Mutation p.G1317S 0.28 benign(0.158) TCGA-FW-A3R5-06 11 1092165 1092165 G A MUC2 Silent p.G1328G 0.29 TCGA-FW-A3R5-06 11 109294955 109294955 C T C11orf87 3'UTR 0.11 TCGA-FW-A3R5-06 11 1095219 1095219 C T MUC2 Silent p.S2013S 0.11 TCGA-FW-A3R5-06 11 1095344 1095344 C T MUC2 Missense_Mutation p.P2055L 0.23 unknown(0) TCGA-FW-A3R5-06 11 1096345 1096345 G A MUC2 Missense_Mutation p.D2124N 0.20 unknown(0) TCGA-FW-A3R5-06 11 1103314 1103314 C T MUC2 Silent p.I2688I 0.08 TCGA-FW-A3R5-06 11 110451248 110451248 G A ARHGAP20 Missense_Mutation p.P808S 0.29 tolerated(0.61) benign(0.005) TCGA-FW-A3R5-06 11 110477348 110477348 G A ARHGAP20 Nonsense_Mutation p.R301* 0.31 TCGA-FW-A3R5-06 11 110477352 110477352 G A ARHGAP20 Silent p.L299L 0.32 TCGA-FW-A3R5-06 11 111154921 111154921 C T C11orf53 Missense_Mutation p.P43L 0.27 tolerated(0.1) benign(0.167) TCGA-FW-A3R5-06 11 111154973 111154973 C T C11orf53 Silent p.F60F 0.33 TCGA-FW-A3R5-06 11 111154975 111154975 C T C11orf53 Missense_Mutation p.P61L 0.32 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 11 111156379 111156379 G A C11orf53 Missense_Mutation p.R104K 0.12 deleterious(0.04) benign(0.199) TCGA-FW-A3R5-06 11 111156421 111156421 C T C11orf53 Missense_Mutation p.P118L 0.36 tolerated(0.66) benign(0.023) TCGA-FW-A3R5-06 11 111166744 111166744 C T COLCA1 3'UTR 0.27 TCGA-FW-A3R5-06 11 111229584 111229584 C T POU2AF1 Missense_Mutation p.E26K 0.22 deleterious(0.05) possibly_damaging(0.876) TCGA-FW-A3R5-06 11 111385654 111385654 C T C11orf88 Missense_Mutation p.P49S 0.18 tolerated(0.26) benign(0.421) TCGA-FW-A3R5-06 11 111407393 111407393 G A C11orf88 Intron 0.21 TCGA-FW-A3R5-06 11 111425979 111425979 G A LAYN Missense_Mutation p.E216K 0.33 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 11 111572220 111572220 C T SIK2 Silent p.P216P 0.09 TCGA-FW-A3R5-06 11 111626048 111626048 G A PPP2R1B Missense_Mutation p.R272C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 111708198 111708198 G A ALG9 Missense_Mutation p.P318S 0.33 deleterious(0.02) possibly_damaging(0.821) TCGA-FW-A3R5-06 11 111749878 111749878 C T FDXACB1 5'UTR 0.22 TCGA-FW-A3R5-06 11 111779446 111779446 G A CRYAB 3'UTR 0.40 TCGA-FW-A3R5-06 11 111796863 111796863 G A C11orf52 Silent p.A104A 0.18 TCGA-FW-A3R5-06 11 111866190 111866190 G A DIXDC1 Missense_Mutation p.D530N 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 11 111887485 111887485 G A DIXDC1 Silent p.R608R 0.43 TCGA-FW-A3R5-06 11 111889718 111889718 G A DIXDC1 Silent p.G669G 0.29 TCGA-FW-A3R5-06 11 111941025 111941025 G A PIH1D2 Intron 0.40 TCGA-FW-A3R5-06 11 112070448 112070448 C T BCO2 Missense_Mutation p.P255S 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 11 113075045 113075045 C T NCAM1 Silent p.F114F 0.23 TCGA-FW-A3R5-06 11 113075226 113075226 C T NCAM1 Nonsense_Mutation p.Q175* 0.24 TCGA-FW-A3R5-06 11 113085140 113085140 G A NCAM1 Silent p.E381E 0.28 TCGA-FW-A3R5-06 11 113085149 113085149 C T NCAM1 Silent p.V384V 0.29 TCGA-FW-A3R5-06 11 113102448 113102448 G A NCAM1 Missense_Mutation p.G440R 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 113102449 113102449 G A NCAM1 Missense_Mutation p.G440E 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 11 113105810 113105810 C G NCAM1 Silent p.A632A 0.35 TCGA-FW-A3R5-06 11 113140899 113140899 T G NCAM1 Intron 0.22 TCGA-FW-A3R5-06 11 113146034 113146034 G A NCAM1 Silent p.T883T 0.30 TCGA-FW-A3R5-06 11 113221964 113221964 C T TTC12 Silent p.F417F 0.23 TCGA-FW-A3R5-06 11 113233182 113233182 C T TTC12 Silent p.A558A 0.31 TCGA-FW-A3R5-06 11 113234613 113234613 C T TTC12 Missense_Mutation p.H594Y 0.29 tolerated(0.52) benign(0.002) TCGA-FW-A3R5-06 11 113270348 113270348 C T ANKK1 Missense_Mutation p.P553S 0.43 tolerated(0.05) benign(0.219) TCGA-FW-A3R5-06 11 113283288 113283288 G A DRD2 Silent p.A376A 0.22 TCGA-FW-A3R5-06 11 113283333 113283333 C T DRD2 Silent p.R361R 0.31 TCGA-FW-A3R5-06 11 113286201 113286201 C T DRD2 Missense_Mutation p.R222Q 0.24 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 11 113287617 113287617 G A DRD2 Missense_Mutation p.S167F 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 113288760 113288760 G A DRD2 Silent p.I128I 0.18 TCGA-FW-A3R5-06 11 113295194 113295194 G A DRD2 Silent p.S60S 0.27 TCGA-FW-A3R5-06 11 113295420 113295420 G A DRD2 Intron 0.20 TCGA-FW-A3R5-06 11 113563947 113563947 G A TMPRSS5 Silent p.S270S 0.21 TCGA-FW-A3R5-06 11 113614568 113614568 G A ZW10 Silent p.L489L 0.21 TCGA-FW-A3R5-06 11 113661321 113661321 C T ATF4P4 RNA 0.46 TCGA-FW-A3R5-06 11 113661535 113661535 C T ATF4P4 RNA 0.07 TCGA-FW-A3R5-06 11 113679831 113679831 C T USP28 Missense_Mutation p.M706I 0.29 tolerated(0.22) benign(0.001) TCGA-FW-A3R5-06 11 113679953 113679953 G A USP28 Nonsense_Mutation p.Q666* 0.28 TCGA-FW-A3R5-06 11 113694393 113694393 C T USP28 Missense_Mutation p.R406Q 0.20 tolerated(0.35) benign(0.016) TCGA-FW-A3R5-06 11 11373680 11373680 C T CSNK2A3 Silent p.K329K 0.21 TCGA-FW-A3R5-06 11 113802129 113802129 G A HTR3B Silent p.K79K 0.27 TCGA-FW-A3R5-06 11 113803686 113803686 G A HTR3B Silent p.R189R 0.31 TCGA-FW-A3R5-06 11 113803741 113803741 G A HTR3B Missense_Mutation p.E208K 0.11 deleterious(0) possibly_damaging(0.874) TCGA-FW-A3R5-06 11 113815359 113815359 C T HTR3B Silent p.V324V 0.10 TCGA-FW-A3R5-06 11 113857486 113857486 G A HTR3A Missense_Mutation p.E324K 0.16 tolerated_low_confidence(0.25) benign(0) TCGA-FW-A3R5-06 11 113934796 113934796 G A ZBTB16 Silent p.G258G 0.45 TCGA-FW-A3R5-06 11 113934842 113934842 G A ZBTB16 Missense_Mutation p.E274K 0.39 tolerated(0.36) benign(0.024) TCGA-FW-A3R5-06 11 114121302 114121302 G A ZBTB16 3'UTR 0.40 TCGA-FW-A3R5-06 11 114167333 114167333 G A NNMT Missense_Mutation p.D19N 0.31 tolerated(0.19) benign(0.013) TCGA-FW-A3R5-06 11 114168706 114168706 G A NNMT Missense_Mutation p.G63D 0.34 deleterious(0.02) probably_damaging(0.989) TCGA-FW-A3R5-06 11 114183227 114183227 C T NNMT 3'UTR 0.12 TCGA-FW-A3R5-06 11 114270917 114270917 G A C11orf71 Missense_Mutation p.P46L 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.824) TCGA-FW-A3R5-06 11 114393141 114393141 C T NXPE1 Nonsense_Mutation p.W256* 0.30 TCGA-FW-A3R5-06 11 114451014 114451014 G A NXPE4 Silent p.S313S 0.24 TCGA-FW-A3R5-06 11 114569186 114569186 G A NXPE2 Silent p.E184E 0.19 TCGA-FW-A3R5-06 11 1162237 1162237 C T MUC5AC Silent p.F582F 0.29 TCGA-FW-A3R5-06 11 116633463 116633463 G A BUD13 Missense_Mutation p.S281F 0.36 deleterious(0) benign(0.316) TCGA-FW-A3R5-06 11 116633707 116633707 G A BUD13 Missense_Mutation p.P200S 0.25 tolerated(0.82) benign(0.006) TCGA-FW-A3R5-06 11 116661443 116661443 C T APOA5 Missense_Mutation p.E168K 0.27 deleterious(0.01) possibly_damaging(0.892) TCGA-FW-A3R5-06 11 116661629 116661629 G A APOA5 Missense_Mutation p.R106C 0.25 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 11 116692388 116692388 C T APOA4 Missense_Mutation p.R129Q 0.20 tolerated(0.78) benign(0.017) TCGA-FW-A3R5-06 11 116744716 116744716 G A SIK3 Missense_Mutation p.P437L 0.24 deleterious_low_confidence(0.02) benign(0.007) TCGA-FW-A3R5-06 11 117038270 117038270 C T PAFAH1B2 Missense_Mutation p.S182L 0.12 deleterious(0.01) possibly_damaging(0.554) TCGA-FW-A3R5-06 11 117100449 117100449 G A PCSK7 Silent p.L38L 0.25 TCGA-FW-A3R5-06 11 117152902 117152902 C T RNF214 Missense_Mutation p.S543F 0.12 deleterious(0) possibly_damaging(0.861) TCGA-FW-A3R5-06 11 117299059 117299059 G A DSCAML1 Silent p.S2109S 0.26 TCGA-FW-A3R5-06 11 117306422 117306422 C T DSCAML1 Missense_Mutation p.G1665E 0.33 tolerated(0.06) possibly_damaging(0.775) TCGA-FW-A3R5-06 11 117310547 117310547 C T DSCAML1 Nonsense_Mutation p.W1383* 0.18 TCGA-FW-A3R5-06 11 117352753 117352753 G A DSCAML1 Silent p.V888V 0.27 TCGA-FW-A3R5-06 11 117403125 117403125 G A DSCAML1 Silent p.T268T 0.10 TCGA-FW-A3R5-06 11 117695409 117695409 G A FXYD2 5'UTR 0.28 TCGA-FW-A3R5-06 11 117774392 117774392 G A TMPRSS13 Missense_Mutation p.P552L 0.31 deleterious(0.03) benign(0.211) TCGA-FW-A3R5-06 11 117870052 117870052 G A IL10RA Missense_Mutation p.G478E 0.21 tolerated(0.15) benign(0.021) TCGA-FW-A3R5-06 11 118007795 118007795 C T SCN4B Missense_Mutation p.E212K 0.21 deleterious(0) possibly_damaging(0.728) TCGA-FW-A3R5-06 11 118015828 118015828 C T SCN4B Missense_Mutation p.G60S 0.27 deleterious(0) possibly_damaging(0.888) TCGA-FW-A3R5-06 11 118015844 118015844 G A SCN4B Silent p.T54T 0.22 TCGA-FW-A3R5-06 11 118037788 118037788 C T SCN2B Silent p.R154R 0.32 TCGA-FW-A3R5-06 11 118039326 118039326 C T SCN2B Missense_Mutation p.E71K 0.28 tolerated(0.53) benign(0.09) TCGA-FW-A3R5-06 11 118071269 118071269 G A AMICA1 Silent p.I277I 0.32 TCGA-FW-A3R5-06 11 118083732 118083732 C T AMICA1 Intron 0.35 TCGA-FW-A3R5-06 11 118183390 118183390 G A CD3E Missense_Mutation p.G54E 0.33 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 11 118183534 118183534 G A CD3E Missense_Mutation p.G102E 0.11 tolerated(0.48) benign(0.001) TCGA-FW-A3R5-06 11 118209855 118209855 C T CD3D 3'UTR 0.34 TCGA-FW-A3R5-06 11 118211092 118211092 C T CD3D Missense_Mutation p.R91Q 0.19 deleterious(0.02) possibly_damaging(0.691) TCGA-FW-A3R5-06 11 118211307 118211307 C T CD3D Silent p.V19V 0.23 TCGA-FW-A3R5-06 11 118343602 118343602 C T KMT2A Silent p.S576S 0.32 TCGA-FW-A3R5-06 11 118360862 118360862 C T KMT2A Missense_Mutation p.R1532C 0.18 probably_damaging(0.983) TCGA-FW-A3R5-06 11 118372518 118372518 C T KMT2A Missense_Mutation p.P2151S 0.26 probably_damaging(0.998) TCGA-FW-A3R5-06 11 118374328 118374328 C T KMT2A Missense_Mutation p.A2574V 0.22 benign(0.001) TCGA-FW-A3R5-06 11 118375153 118375153 C A KMT2A Missense_Mutation p.P2849H 0.23 probably_damaging(0.999) TCGA-FW-A3R5-06 11 118375399 118375399 C T KMT2A Missense_Mutation p.P2931L 0.27 probably_damaging(0.999) TCGA-FW-A3R5-06 11 118399470 118399470 C T TTC36 Missense_Mutation p.R91C 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 118514600 118514600 C T PHLDB1 Missense_Mutation p.S987F 0.41 tolerated(0.06) possibly_damaging(0.707) TCGA-FW-A3R5-06 11 118516191 118516191 C T PHLDB1 Missense_Mutation p.P1080L 0.20 deleterious(0.01) benign(0.125) TCGA-FW-A3R5-06 11 118529660 118529660 C T TREH Missense_Mutation p.R500Q 0.32 tolerated(0.15) benign(0.016) TCGA-FW-A3R5-06 11 118764380 118764380 G A CXCR5 Missense_Mutation p.G43R 0.23 tolerated(0.27) possibly_damaging(0.856) TCGA-FW-A3R5-06 11 118764585 118764585 G A CXCR5 Missense_Mutation p.G111D 0.32 deleterious(0.03) benign(0.41) TCGA-FW-A3R5-06 11 118764606 118764606 G A CXCR5 Missense_Mutation p.G118E 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 118779085 118779085 G A BCL9L Silent p.P102P 0.28 TCGA-FW-A3R5-06 11 118849510 118849510 G A FOXR1 Missense_Mutation p.R27Q 0.26 tolerated(0.79) benign(0.015) TCGA-FW-A3R5-06 11 118850327 118850327 G A FOXR1 Missense_Mutation p.R187K 0.29 tolerated(0.22) possibly_damaging(0.832) TCGA-FW-A3R5-06 11 118886335 118886335 G A CCDC84 3'UTR 0.27 TCGA-FW-A3R5-06 11 118967876 118967876 G A DPAGT1 Silent p.L379L 0.32 TCGA-FW-A3R5-06 11 118978441 118978441 C T C2CD2L 5'UTR 0.44 TCGA-FW-A3R5-06 11 118986957 118986957 C T C2CD2L Silent p.P705P 0.20 TCGA-FW-A3R5-06 11 119003883 119003883 C T HINFP Missense_Mutation p.R365C 0.23 deleterious(0) benign(0.329) TCGA-FW-A3R5-06 11 119025267 119025267 G A ABCG4 Silent p.Q174Q 0.24 TCGA-FW-A3R5-06 11 119025518 119025518 C T ABCG4 Silent p.C193C 0.24 TCGA-FW-A3R5-06 11 119027100 119027100 G A ABCG4 Missense_Mutation p.G250S 0.28 deleterious(0.01) possibly_damaging(0.872) TCGA-FW-A3R5-06 11 119031618 119031618 G A ABCG4 Silent p.T581T 0.33 TCGA-FW-A3R5-06 11 119045960 119045960 C T NLRX1 Missense_Mutation p.P550S 0.34 tolerated(0.28) probably_damaging(0.998) TCGA-FW-A3R5-06 11 119053036 119053036 C T NLRX1 Missense_Mutation p.P863L 0.18 deleterious(0) benign(0.059) TCGA-FW-A3R5-06 11 119053962 119053962 C T NLRX1 Silent p.L914L 0.10 TCGA-FW-A3R5-06 11 119058284 119058284 C T PDZD3 Missense_Mutation p.P178S 0.27 tolerated(0.71) benign(0.004) TCGA-FW-A3R5-06 11 119156009 119156009 C T CBL Silent p.S558S 0.27 TCGA-FW-A3R5-06 11 119216557 119216557 G A MFRP Missense_Mutation p.T118I 0.31 tolerated(0.16) benign(0.002) TCGA-FW-A3R5-06 11 119216622 119216622 G A MFRP Silent p.P96P 0.31 TCGA-FW-A3R5-06 11 119228486 119228486 G A USP2 Silent p.F494F 0.30 TCGA-FW-A3R5-06 11 119229819 119229819 G A USP2 Missense_Mutation p.R363C 0.63 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 119290028 119290028 G A THY1 3'UTR 0.50 TCGA-FW-A3R5-06 11 11951662 11951662 C T USP47 Silent p.F462F 0.14 TCGA-FW-A3R5-06 11 11971966 11971966 C T USP47 Missense_Mutation p.H1106Y 0.28 deleterious(0.02) probably_damaging(0.927) TCGA-FW-A3R5-06 11 11985832 11985832 C T DKK3 3'UTR 0.23 TCGA-FW-A3R5-06 11 119986065 119986065 G A TRIM29 Missense_Mutation p.S562F 0.31 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FW-A3R5-06 11 119996563 119996563 G A TRIM29 Missense_Mutation p.P390L 0.27 deleterious(0.02) possibly_damaging(0.698) TCGA-FW-A3R5-06 11 120008510 120008510 C T TRIM29 Missense_Mutation p.R77Q 0.30 deleterious_low_confidence(0.01) benign(0.44) TCGA-FW-A3R5-06 11 120008530 120008530 G A TRIM29 Silent p.F70F 0.16 TCGA-FW-A3R5-06 11 120008550 120008550 C T TRIM29 Missense_Mutation p.E64K 0.26 tolerated_low_confidence(0.16) benign(0.005) TCGA-FW-A3R5-06 11 120169044 120169044 G A POU2F3 Missense_Mutation p.G70E 0.38 deleterious(0) possibly_damaging(0.776) TCGA-FW-A3R5-06 11 120188070 120188070 C T POU2F3 Missense_Mutation p.S425L 0.27 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 120189154 120189154 G A POU2F3 3'UTR 0.33 TCGA-FW-A3R5-06 11 120349057 120349057 C T ARHGEF12 Missense_Mutation p.P1242L 0.33 deleterious_low_confidence(0.05) benign(0.003) TCGA-FW-A3R5-06 11 120690526 120690526 C T GRIK4 Silent p.T136T 0.28 TCGA-FW-A3R5-06 11 120702688 120702688 C T GRIK4 Silent p.A213A 0.07 TCGA-FW-A3R5-06 11 120732746 120732746 C T GRIK4 Missense_Mutation p.H275Y 0.29 deleterious(0.03) benign(0.412) TCGA-FW-A3R5-06 11 120925967 120925967 C T TBCEL Missense_Mutation p.S221L 0.35 tolerated(0.24) benign(0.006) TCGA-FW-A3R5-06 11 120980043 120980043 C T TECTA Nonsense_Mutation p.R108* 0.32 TCGA-FW-A3R5-06 11 120984322 120984322 G A TECTA Missense_Mutation p.E229K 0.12 deleterious(0.03) benign(0.118) TCGA-FW-A3R5-06 11 120989131 120989131 G A TECTA Missense_Mutation p.E303K 0.28 tolerated(0.08) benign(0.217) TCGA-FW-A3R5-06 11 120989342 120989342 C T TECTA Missense_Mutation p.S373L 0.09 tolerated(0.18) benign(0.098) TCGA-FW-A3R5-06 11 120996131 120996131 C T TECTA Nonsense_Mutation p.Q442* 0.19 TCGA-FW-A3R5-06 11 120998597 120998597 C T TECTA Silent p.F637F 0.25 TCGA-FW-A3R5-06 11 121000554 121000554 G A TECTA Missense_Mutation p.E859K 0.26 deleterious(0.03) possibly_damaging(0.679) TCGA-FW-A3R5-06 11 121008394 121008394 G A TECTA Missense_Mutation p.R1069K 0.16 tolerated(0.13) benign(0.008) TCGA-FW-A3R5-06 11 121008491 121008491 C T TECTA Silent p.I1101I 0.42 TCGA-FW-A3R5-06 11 121016411 121016411 C T TECTA Missense_Mutation p.R1231W 0.36 deleterious(0.01) probably_damaging(0.914) TCGA-FW-A3R5-06 11 121016536 121016536 G A TECTA Silent p.K1272K 0.19 TCGA-FW-A3R5-06 11 121061450 121061450 C T TECTA Missense_Mutation p.L2135F 0.32 tolerated_low_confidence(0.49) benign(0.012) TCGA-FW-A3R5-06 11 1213316 1213316 G A MUC5AC RNA 0.09 TCGA-FW-A3R5-06 11 1213346 1213346 G A MUC5AC RNA 0.07 TCGA-FW-A3R5-06 11 121358776 121358776 G A SORL1 Nonsense_Mutation p.W188* 0.29 TCGA-FW-A3R5-06 11 121384967 121384967 C T SORL1 Missense_Mutation p.S383F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 121391559 121391559 G A SORL1 Splice_Site p.X468_splice 0.33 TCGA-FW-A3R5-06 11 121393311 121393311 C T SORL1 Missense_Mutation p.S474F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 1214122 1214122 C T MUC5AC RNA 0.24 TCGA-FW-A3R5-06 11 121414256 121414256 G A SORL1 Splice_Site p.X562_splice 0.25 TCGA-FW-A3R5-06 11 121414281 121414281 C T SORL1 Silent p.T570T 0.19 TCGA-FW-A3R5-06 11 121414362 121414362 C T SORL1 Silent p.F597F 0.31 TCGA-FW-A3R5-06 11 121420752 121420752 C T SORL1 Missense_Mutation p.P712L 0.22 tolerated(0.3) benign(0.003) TCGA-FW-A3R5-06 11 121420796 121420796 G A SORL1 Missense_Mutation p.G727S 0.29 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 121428052 121428052 C T SORL1 Silent p.L867L 0.24 TCGA-FW-A3R5-06 11 121430236 121430236 C T SORL1 Silent p.I973I 0.23 TCGA-FW-A3R5-06 11 121440964 121440964 G A SORL1 Missense_Mutation p.D1108N 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-FW-A3R5-06 11 121478834 121478834 G A SORL1 Missense_Mutation p.G1730R 0.28 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 11 121485641 121485641 G A SORL1 Silent p.G1827G 0.30 TCGA-FW-A3R5-06 11 121485642 121485642 G A SORL1 Missense_Mutation p.D1828N 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 11 121492935 121492935 G A SORL1 Nonsense_Mutation p.W2043* 0.26 TCGA-FW-A3R5-06 11 121498412 121498412 C T SORL1 Silent p.A2171A 0.25 TCGA-FW-A3R5-06 11 121498457 121498457 C T SORL1 Silent p.F2186F 0.15 TCGA-FW-A3R5-06 11 1217130 1217130 C T MUC5AC RNA 0.16 TCGA-FW-A3R5-06 11 121986228 121986228 C T BLID 3'UTR 0.27 TCGA-FW-A3R5-06 11 122023001 122023001 G A MIR100 RNA 0.31 TCGA-FW-A3R5-06 11 12225853 12225853 C T MICAL2 Silent p.Y107Y 0.15 TCGA-FW-A3R5-06 11 12225854 12225854 C T MICAL2 Silent p.L108L 0.13 TCGA-FW-A3R5-06 11 12247800 12247800 C T MICAL2 Missense_Mutation p.P591S 0.30 tolerated(1) benign(0.319) TCGA-FW-A3R5-06 11 12270755 12270755 C T MICAL2 Missense_Mutation p.H937Y 0.34 tolerated(0.09) benign(0.016) TCGA-FW-A3R5-06 11 122720888 122720888 C T CRTAM Silent p.P53P 0.23 TCGA-FW-A3R5-06 11 122738187 122738187 C T CRTAM Silent p.F296F 0.21 TCGA-FW-A3R5-06 11 122756816 122756816 G A C11orf63 Missense_Mutation p.E87K 0.23 tolerated(0.06) possibly_damaging(0.619) TCGA-FW-A3R5-06 11 122774731 122774731 C T C11orf63 Missense_Mutation p.P148L 0.25 tolerated(0.1) benign(0.012) TCGA-FW-A3R5-06 11 122774735 122774735 G A C11orf63 Silent p.E149E 0.28 TCGA-FW-A3R5-06 11 122795646 122795646 G A C11orf63 Silent p.Q302Q 0.16 TCGA-FW-A3R5-06 11 122805572 122805572 C T C11orf63 Nonsense_Mutation p.Q475* 0.27 TCGA-FW-A3R5-06 11 12284209 12284209 C T MICAL2 Intron 0.21 TCGA-FW-A3R5-06 11 122928380 122928380 G A HSPA8 3'UTR 0.25 TCGA-FW-A3R5-06 11 12313759 12313759 C T MICALCL Missense_Mutation p.S15L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 11 12315809 12315809 C T MICALCL Silent p.I277I 0.26 TCGA-FW-A3R5-06 11 12316366 12316366 C T MICALCL Missense_Mutation p.P463L 0.45 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 11 12341345 12341345 C T MICALCL Missense_Mutation p.S510F 0.29 deleterious(0) possibly_damaging(0.895) TCGA-FW-A3R5-06 11 123484269 123484269 C T GRAMD1B Silent p.P567P 0.30 TCGA-FW-A3R5-06 11 123485474 123485474 T A GRAMD1B Missense_Mutation p.I607N 0.27 tolerated(0.28) benign(0.157) TCGA-FW-A3R5-06 11 123504887 123504887 C T SCN3B Silent p.E204E 0.30 TCGA-FW-A3R5-06 11 123508947 123508947 C T SCN3B Missense_Mutation p.M177I 0.21 deleterious(0.01) benign(0.176) TCGA-FW-A3R5-06 11 123513287 123513287 G A SCN3B Silent p.S104S 0.24 TCGA-FW-A3R5-06 11 123516367 123516367 C T SCN3B Missense_Mutation p.M49I 0.17 tolerated(0.42) benign(0.175) TCGA-FW-A3R5-06 11 123524485 123524485 G A SCN3B Missense_Mutation p.P9S 0.19 tolerated(0.4) benign(0) TCGA-FW-A3R5-06 11 123596828 123596828 G A ZNF202 Silent p.L608L 0.25 TCGA-FW-A3R5-06 11 123600430 123600430 G A ZNF202 Missense_Mutation p.S169L 0.16 tolerated(0.87) benign(0.001) TCGA-FW-A3R5-06 11 123624347 123624347 C T OR6X1 Missense_Mutation p.E294K 0.29 tolerated(1) probably_damaging(0.992) TCGA-FW-A3R5-06 11 123624387 123624387 G A OR6X1 Silent p.T280T 0.27 TCGA-FW-A3R5-06 11 123624451 123624451 C T OR6X1 Missense_Mutation p.R259K 0.23 tolerated(0.07) possibly_damaging(0.53) TCGA-FW-A3R5-06 11 123624786 123624786 C T OR6X1 Nonsense_Mutation p.W147* 0.19 TCGA-FW-A3R5-06 11 123676126 123676126 C T OR6M1 Missense_Mutation p.R311K 0.07 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 11 123676172 123676172 C T OR6M1 Missense_Mutation p.E296K 0.23 tolerated(0.1) benign(0.013) TCGA-FW-A3R5-06 11 123676399 123676399 G A OR6M1 Missense_Mutation p.S220F 0.29 tolerated(0.7) benign(0.088) TCGA-FW-A3R5-06 11 123754798 123754798 G A TMEM225 Silent p.F149F 0.14 TCGA-FW-A3R5-06 11 123755273 123755273 C T TMEM225 Silent p.L84L 0.34 TCGA-FW-A3R5-06 11 123756262 123756262 G A TMEM225 5'UTR 0.27 TCGA-FW-A3R5-06 11 123777308 123777308 C T OR8D4 Missense_Mutation p.T57I 0.21 deleterious(0.05) benign(0.002) TCGA-FW-A3R5-06 11 123777309 123777309 C T OR8D4 Silent p.T57T 0.21 TCGA-FW-A3R5-06 11 123810368 123810368 G A OR4D5 Silent p.L15L 0.25 TCGA-FW-A3R5-06 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-FW-A3R5-06 11 123813687 123813687 G A OR6T1 Missense_Mutation p.P287S 0.10 deleterious(0.03) possibly_damaging(0.808) TCGA-FW-A3R5-06 11 123813752 123813752 G A OR6T1 Missense_Mutation p.A265V 0.24 tolerated(0.1) benign(0.139) TCGA-FW-A3R5-06 11 123813799 123813799 G A OR6T1 Silent p.V249V 0.26 TCGA-FW-A3R5-06 11 123814126 123814126 G A OR6T1 Silent p.V140V 0.39 TCGA-FW-A3R5-06 11 123847485 123847485 C T OR10S1 Missense_Mutation p.R305Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 11 123847868 123847868 G A OR10S1 Silent p.T177T 0.09 TCGA-FW-A3R5-06 11 123847869 123847869 G A OR10S1 Missense_Mutation p.T177I 0.10 tolerated(0.12) probably_damaging(1) TCGA-FW-A3R5-06 11 123848171 123848171 C T OR10S1 Silent p.L76L 0.26 TCGA-FW-A3R5-06 11 123848336 123848336 C T OR10S1 Silent p.V21V 0.28 TCGA-FW-A3R5-06 11 123848369 123848369 C T OR10S1 Missense_Mutation p.M10I 0.33 tolerated(0.06) benign(0.039) TCGA-FW-A3R5-06 11 123886279 123886279 G A OR10G4 5'Flank 0.36 TCGA-FW-A3R5-06 11 123886286 123886286 C T OR10G4 Missense_Mutation p.S2F 0.19 deleterious(0.02) benign(0.142) TCGA-FW-A3R5-06 11 123886590 123886590 C T OR10G4 Silent p.F103F 0.24 TCGA-FW-A3R5-06 11 123886858 123886858 G A OR10G4 Missense_Mutation p.A193T 0.38 tolerated(0.27) benign(0.012) TCGA-FW-A3R5-06 11 123887067 123887067 C T OR10G4 Silent p.G262G 0.20 TCGA-FW-A3R5-06 11 123887120 123887120 C T OR10G4 Missense_Mutation p.P280L 0.19 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 123894517 123894517 C T OR10G9 Silent p.V266V 0.32 TCGA-FW-A3R5-06 11 123901221 123901221 C T OR10G8 Silent p.L298L 0.32 TCGA-FW-A3R5-06 11 123901226 123901226 G A OR10G8 Silent p.L299L 0.25 TCGA-FW-A3R5-06 11 123908902 123908902 C T OR10G7 Silent p.G269G 0.30 TCGA-FW-A3R5-06 11 123909307 123909307 C T OR10G7 Missense_Mutation p.M134I 0.25 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 11 123909381 123909381 C T OR10G7 Missense_Mutation p.E110K 0.37 deleterious(0) benign(0.172) TCGA-FW-A3R5-06 11 123988176 123988176 C T VWA5A Intron 0.09 TCGA-FW-A3R5-06 11 123989367 123989367 C T VWA5A Silent p.C199C 0.18 TCGA-FW-A3R5-06 11 124007847 124007847 C T VWA5A Missense_Mutation p.S584F 0.22 deleterious(0.01) possibly_damaging(0.873) TCGA-FW-A3R5-06 11 124012331 124012331 C T VWA5A Missense_Mutation p.R636C 0.32 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 11 124120608 124120608 C T OR8G1 Silent p.F62F 0.36 TCGA-FW-A3R5-06 11 124121172 124121172 C T OR8G1 Silent p.I250I 0.08 TCGA-FW-A3R5-06 11 124121217 124121217 C T OR8G1 Intron 0.27 TCGA-FW-A3R5-06 11 124134801 124134801 C T OR8G5 Missense_Mutation p.L27F 0.14 tolerated_low_confidence(0.38) benign(0.053) TCGA-FW-A3R5-06 11 124134911 124134911 C T OR8G5 Silent p.F63F 0.18 TCGA-FW-A3R5-06 11 124135031 124135031 C T OR8G5 Silent p.F103F 0.39 TCGA-FW-A3R5-06 11 124135110 124135110 C T OR8G5 Missense_Mutation p.P130S 0.27 tolerated(0.22) benign(0.023) TCGA-FW-A3R5-06 11 124135375 124135375 C T OR8G5 Missense_Mutation p.S218F 0.27 deleterious(0) possibly_damaging(0.593) TCGA-FW-A3R5-06 11 124135469 124135469 C T OR8G5 Silent p.I249I 0.08 TCGA-FW-A3R5-06 11 124135510 124135510 T C OR8G5 Missense_Mutation p.I263T 0.33 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 11 124180003 124180003 G A OR8D1 Silent p.F220F 0.33 TCGA-FW-A3R5-06 11 124180280 124180280 C T OR8D1 Missense_Mutation p.S128N 0.19 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 11 124180489 124180489 G A OR8D1 Silent p.P58P 0.19 TCGA-FW-A3R5-06 11 124180566 124180566 C T OR8D1 Missense_Mutation p.G33R 0.28 deleterious(0.02) possibly_damaging(0.779) TCGA-FW-A3R5-06 11 124180569 124180569 G A OR8D1 Silent p.L32L 0.11 TCGA-FW-A3R5-06 11 124180579 124180579 G A OR8D1 Silent p.F28F 0.19 TCGA-FW-A3R5-06 11 124189733 124189733 C T OR8D2 Missense_Mutation p.D121N 0.33 deleterious(0) possibly_damaging(0.722) TCGA-FW-A3R5-06 11 124189830 124189830 C T OR8D2 Silent p.E88E 0.30 TCGA-FW-A3R5-06 11 124189996 124189996 C T OR8D2 Missense_Mutation p.G33E 0.22 deleterious(0.02) possibly_damaging(0.66) TCGA-FW-A3R5-06 11 124252337 124252337 C T OR8B2 Silent p.R301R 0.28 TCGA-FW-A3R5-06 11 124253009 124253009 G A OR8B2 Silent p.F77F 0.29 TCGA-FW-A3R5-06 11 124253036 124253036 G A OR8B2 Silent p.F68F 0.26 TCGA-FW-A3R5-06 11 124294023 124294023 G A OR8B4 Silent p.L249L 0.09 TCGA-FW-A3R5-06 11 124294075 124294075 C T OR8B4 Silent p.E231E 0.10 TCGA-FW-A3R5-06 11 124294729 124294729 G A OR8B4 Silent p.I13I 0.19 TCGA-FW-A3R5-06 11 124294748 124294748 G A OR8B4 Missense_Mutation p.S7F 0.17 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-FW-A3R5-06 11 124310178 124310178 C T OR8B8 Missense_Mutation p.M268I 0.35 deleterious_low_confidence(0.04) benign(0.061) TCGA-FW-A3R5-06 11 124412747 124412747 C T OR8B12 Silent p.E268E 0.25 TCGA-FW-A3R5-06 11 124413062 124413062 C T OR8B12 Missense_Mutation p.M163I 0.30 tolerated_low_confidence(0.07) benign(0.005) TCGA-FW-A3R5-06 11 124413290 124413290 C T OR8B12 Silent p.R87R 0.24 TCGA-FW-A3R5-06 11 124413483 124413483 C T OR8B12 Missense_Mutation p.R23Q 0.08 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 11 124439967 124439967 G A OR8A1 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) benign(0) TCGA-FW-A3R5-06 11 124440076 124440076 G A OR8A1 Missense_Mutation p.A38T 0.23 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 11 124440515 124440515 C T OR8A1 Missense_Mutation p.P184L 0.27 tolerated(0.73) benign(0.219) TCGA-FW-A3R5-06 11 124440711 124440711 G A OR8A1 Silent p.G249G 0.23 TCGA-FW-A3R5-06 11 124489364 124489364 G A PANX3 Missense_Mutation p.E238K 0.30 deleterious(0.01) benign(0.008) TCGA-FW-A3R5-06 11 124489501 124489501 G A PANX3 Silent p.L283L 0.26 TCGA-FW-A3R5-06 11 124530644 124530644 G A SIAE Silent p.F95F 0.30 TCGA-FW-A3R5-06 11 124551353 124551353 G A SPA17 Missense_Mutation p.E75K 0.35 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 124619760 124619760 G A VSIG2 Missense_Mutation p.P144S 0.39 deleterious(0.01) probably_damaging(0.964) TCGA-FW-A3R5-06 11 124623472 124623472 C T ESAM 3'UTR 0.38 TCGA-FW-A3R5-06 11 124623552 124623552 G A ESAM Missense_Mutation p.S388F 0.33 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 11 124624623 124624623 G A ESAM Missense_Mutation p.S215L 0.28 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 11 124626255 124626255 G A ESAM Missense_Mutation p.P152L 0.20 deleterious(0.03) possibly_damaging(0.739) TCGA-FW-A3R5-06 11 124637184 124637184 G A MSANTD2 Missense_Mutation p.P471L 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.741) TCGA-FW-A3R5-06 11 124637768 124637768 G A MSANTD2 Silent p.I276I 0.25 TCGA-FW-A3R5-06 11 124740999 124740999 C T ROBO3 Missense_Mutation p.P375S 0.16 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 11 124743205 124743205 G A ROBO3 Splice_Site p.X513_splice 0.47 TCGA-FW-A3R5-06 11 124745472 124745472 C T ROBO3 Missense_Mutation p.P771L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 124750348 124750348 C T ROBO3 Silent p.F1331F 0.26 TCGA-FW-A3R5-06 11 124756397 124756397 G A ROBO4 Silent p.F919F 0.35 TCGA-FW-A3R5-06 11 124756615 124756615 C T ROBO4 Missense_Mutation p.G847R 0.28 tolerated(0.11) probably_damaging(0.953) TCGA-FW-A3R5-06 11 124756633 124756633 C T ROBO4 Missense_Mutation p.D841N 0.25 deleterious(0.05) benign(0.002) TCGA-FW-A3R5-06 11 124757009 124757009 G A ROBO4 Missense_Mutation p.L767F 0.19 deleterious(0.02) possibly_damaging(0.587) TCGA-FW-A3R5-06 11 124761637 124761637 C T ROBO4 Missense_Mutation p.D537N 0.33 tolerated(0.53) probably_damaging(0.998) TCGA-FW-A3R5-06 11 124766906 124766906 C T ROBO4 Missense_Mutation p.D108N 0.26 tolerated(0.07) benign(0.044) TCGA-FW-A3R5-06 11 1247914 1247914 G A MUC5B Missense_Mutation p.G90D 0.20 unknown(0) TCGA-FW-A3R5-06 11 124967604 124967604 G A TMEM218 Silent p.V82V 0.14 TCGA-FW-A3R5-06 11 12539227 12539227 T C PARVA Missense_Mutation p.F353S 0.18 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 11 125513759 125513759 C T CHEK1 Missense_Mutation p.S296F 0.23 deleterious(0) benign(0.013) TCGA-FW-A3R5-06 11 125525298 125525298 C T CHEK1 3'UTR 0.25 TCGA-FW-A3R5-06 11 125780323 125780323 G A DDX25 Missense_Mutation p.G191E 0.09 deleterious(0.02) possibly_damaging(0.554) TCGA-FW-A3R5-06 11 125787074 125787074 G A DDX25 Silent p.R322R 0.33 TCGA-FW-A3R5-06 11 1258188 1258188 G A MUC5B Missense_Mutation p.D1031N 0.23 unknown(0) TCGA-FW-A3R5-06 11 125875776 125875776 G A CDON Missense_Mutation p.P577S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 126074205 126074205 C T RPUSD4 Missense_Mutation p.R272Q 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 126143269 126143269 C T FOXRED1 Silent p.L152L 0.20 TCGA-FW-A3R5-06 11 1262685 1262685 G A MUC5B Silent p.G1525G 0.38 TCGA-FW-A3R5-06 11 1266909 1266909 C T MUC5B Silent p.V2933V 0.18 TCGA-FW-A3R5-06 11 1268686 1268686 G A MUC5B Missense_Mutation p.G3526R 0.20 unknown(0) TCGA-FW-A3R5-06 11 128628034 128628034 G A FLI1 Missense_Mutation p.D15N 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 128642808 128642808 G A FLI1 Missense_Mutation p.E173K 0.25 tolerated(0.12) benign(0.026) TCGA-FW-A3R5-06 11 128651888 128651888 G A FLI1 Missense_Mutation p.D209N 0.26 tolerated(0.38) benign(0.001) TCGA-FW-A3R5-06 11 128677123 128677123 G A FLI1 Missense_Mutation p.R257Q 0.22 deleterious(0.05) benign(0.095) TCGA-FW-A3R5-06 11 128680491 128680491 G A FLI1 Missense_Mutation p.E323K 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 128680643 128680643 G A FLI1 Silent p.P373P 0.19 TCGA-FW-A3R5-06 11 128709191 128709191 C T KCNJ1 Silent p.G335G 0.29 TCGA-FW-A3R5-06 11 128781494 128781494 G A KCNJ5 Nonsense_Mutation p.W109* 0.32 TCGA-FW-A3R5-06 11 128781919 128781919 C T KCNJ5 Missense_Mutation p.P251S 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 128781930 128781930 G A KCNJ5 Silent p.Q254Q 0.13 TCGA-FW-A3R5-06 11 128786428 128786428 C T KCNJ5 Silent p.T354T 0.28 TCGA-FW-A3R5-06 11 128840283 128840283 G A ARHGAP32 Missense_Mutation p.R1595C 0.32 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 128840353 128840353 G A ARHGAP32 Silent p.P1571P 0.26 TCGA-FW-A3R5-06 11 128841060 128841060 G A ARHGAP32 Intron 0.33 TCGA-FW-A3R5-06 11 128855915 128855915 G A ARHGAP32 Silent p.L489L 0.19 TCGA-FW-A3R5-06 11 128856489 128856489 G A ARHGAP32 Missense_Mutation p.S444F 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 129321287 129321287 C T BARX2 Missense_Mutation p.P277L 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 11 129321314 129321314 G A BARX2 3'UTR 0.42 TCGA-FW-A3R5-06 11 129321339 129321339 G A BARX2 3'UTR 0.24 TCGA-FW-A3R5-06 11 129744079 129744079 G A NFRKB Silent p.S761S 0.24 TCGA-FW-A3R5-06 11 129752087 129752087 G A NFRKB Missense_Mutation p.P387L 0.28 deleterious(0) unknown(0) TCGA-FW-A3R5-06 11 129781995 129781995 G A PRDM10 Silent p.A993A 0.24 TCGA-FW-A3R5-06 11 129817346 129817346 G A PRDM10 Intron 0.28 TCGA-FW-A3R5-06 11 130011906 130011906 C T APLP2 Silent p.I709I 0.33 TCGA-FW-A3R5-06 11 130059685 130059685 C T ST14 Silent p.H164H 0.31 TCGA-FW-A3R5-06 11 130060506 130060506 C T ST14 Silent p.D264D 0.28 TCGA-FW-A3R5-06 11 130060507 130060507 C T ST14 Missense_Mutation p.L265F 0.26 deleterious(0.01) possibly_damaging(0.892) TCGA-FW-A3R5-06 11 130275440 130275440 C T ADAMTS8 3'UTR 0.25 TCGA-FW-A3R5-06 11 130275666 130275666 G T ADAMTS8 Missense_Mutation p.S819R 0.23 tolerated(0.44) benign(0.008) TCGA-FW-A3R5-06 11 130275789 130275789 G A ADAMTS8 Silent p.S778S 0.37 TCGA-FW-A3R5-06 11 130281490 130281490 C T ADAMTS8 Silent p.V524V 0.25 TCGA-FW-A3R5-06 11 130286178 130286178 G A ADAMTS8 Missense_Mutation p.L382F 0.33 tolerated(0.07) possibly_damaging(0.574) TCGA-FW-A3R5-06 11 130286841 130286841 C T ADAMTS8 Missense_Mutation p.E364K 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 130319437 130319437 C T ADAMTS15 Missense_Mutation p.P190L 0.54 tolerated(0.25) benign(0.027) TCGA-FW-A3R5-06 11 130319507 130319507 C T ADAMTS15 Silent p.F213F 0.54 TCGA-FW-A3R5-06 11 130341178 130341178 G A ADAMTS15 Missense_Mutation p.D660N 0.14 deleterious(0) possibly_damaging(0.873) TCGA-FW-A3R5-06 11 130343086 130343086 C T ADAMTS15 Silent p.F741F 0.34 TCGA-FW-A3R5-06 11 130777984 130777984 G A SNX19 Intron 0.24 TCGA-FW-A3R5-06 11 131781525 131781525 G A NTM Silent p.G50G 0.26 TCGA-FW-A3R5-06 11 132016264 132016264 C T NTM Missense_Mutation p.P86S 0.26 tolerated(0.08) possibly_damaging(0.897) TCGA-FW-A3R5-06 11 132177606 132177606 G A NTM Missense_Mutation p.E184K 0.26 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 11 132184637 132184637 G A NTM Intron 0.19 TCGA-FW-A3R5-06 11 132205063 132205063 G A NTM 3'UTR 0.32 TCGA-FW-A3R5-06 11 132205064 132205064 G A NTM 3'UTR 0.34 TCGA-FW-A3R5-06 11 132307179 132307179 C T OPCML Missense_Mutation p.E201K 0.13 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 11 132399036 132399036 C T OPCML Missense_Mutation p.E149K 0.29 deleterious(0) possibly_damaging(0.895) TCGA-FW-A3R5-06 11 132527047 132527047 G A OPCML Missense_Mutation p.P112L 0.18 tolerated(0.17) probably_damaging(0.984) TCGA-FW-A3R5-06 11 133712390 133712390 C T SPATA19 Missense_Mutation p.V143M 0.30 tolerated(0.14) probably_damaging(0.934) TCGA-FW-A3R5-06 11 133714141 133714141 C T SPATA19 Missense_Mutation p.S120N 0.23 deleterious(0) possibly_damaging(0.682) TCGA-FW-A3R5-06 11 133714162 133714162 C T SPATA19 Missense_Mutation p.R113Q 0.24 deleterious(0.01) possibly_damaging(0.776) TCGA-FW-A3R5-06 11 133795854 133795854 G A IGSF9B Missense_Mutation p.P605L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 134163082 134163082 C T GLB1L3 Silent p.F285F 0.27 TCGA-FW-A3R5-06 11 134179608 134179608 G A GLB1L3 Missense_Mutation p.M350I 0.16 tolerated(0.42) benign(0.044) TCGA-FW-A3R5-06 11 134179613 134179613 G A GLB1L3 Missense_Mutation p.G352E 0.24 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 134183896 134183896 G A GLB1L3 Silent p.L547L 0.15 TCGA-FW-A3R5-06 11 134188628 134188628 C T GLB1L3 Missense_Mutation p.P628L 0.20 deleterious(0.02) benign(0.106) TCGA-FW-A3R5-06 11 13513947 13513947 C T PTH 3'UTR 0.29 TCGA-FW-A3R5-06 11 13514323 13514323 G A PTH Missense_Mutation p.S27F 0.23 deleterious(0) benign(0.188) TCGA-FW-A3R5-06 11 13729486 13729486 T C FAR1 Silent p.L135L 0.29 TCGA-FW-A3R5-06 11 13749204 13749204 C T FAR1 Silent p.L453L 0.20 TCGA-FW-A3R5-06 11 13984545 13984545 G A SPON1 RNA 0.44 TCGA-FW-A3R5-06 11 14156999 14156999 G A RNA5SP332 3'Flank 0.23 TCGA-FW-A3R5-06 11 14284333 14284333 G A RP11-21L19.1 3'Flank 0.12 TCGA-FW-A3R5-06 11 14284465 14284465 G A RP11-21L19.1 RNA 0.28 TCGA-FW-A3R5-06 11 14287146 14287146 G A RP11-21L19.1 Intron 0.39 TCGA-FW-A3R5-06 11 14300825 14300825 G A RRAS2 3'UTR 0.40 TCGA-FW-A3R5-06 11 14504625 14504625 G A COPB1 Missense_Mutation p.R304C 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 14990185 14990185 G A CALCA 3'UTR 0.20 TCGA-FW-A3R5-06 11 15267502 15267502 G A INSC Silent p.Q552Q 0.10 TCGA-FW-A3R5-06 11 1619373 1619373 C T KRTAP5-2 Silent p.G36G 0.31 TCGA-FW-A3R5-06 11 1629548 1629548 C T KRTAP5-3 Missense_Mutation p.G23D 0.31 tolerated(1) unknown(0) TCGA-FW-A3R5-06 11 1642706 1642706 G A KRTAP5-4 Silent p.S206S 0.33 TCGA-FW-A3R5-06 11 1651391 1651391 G A KRTAP5-5 Silent p.G107G 0.30 TCGA-FW-A3R5-06 11 1651392 1651392 G A KRTAP5-5 Missense_Mutation p.A108T 0.30 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 11 1651679 1651679 C T KRTAP5-5 Silent p.S203S 0.25 TCGA-FW-A3R5-06 11 16816494 16816494 C T PLEKHA7 Silent p.E827E 0.29 TCGA-FW-A3R5-06 11 16822601 16822601 C T PLEKHA7 Missense_Mutation p.E777K 0.22 deleterious(0.01) possibly_damaging(0.906) TCGA-FW-A3R5-06 11 16877459 16877459 G A PLEKHA7 Missense_Mutation p.P103L 0.25 tolerated(0.33) benign(0.002) TCGA-FW-A3R5-06 11 16877460 16877460 G A PLEKHA7 Missense_Mutation p.P103S 0.25 tolerated(1) benign(0.044) TCGA-FW-A3R5-06 11 16892697 16892697 G A PLEKHA7 Missense_Mutation p.P85L 0.17 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 11 17190305 17190305 A G PIK3C2A Silent p.L328L 0.16 TCGA-FW-A3R5-06 11 17323410 17323410 C T NUCB2 Silent p.S124S 0.26 TCGA-FW-A3R5-06 11 17332408 17332408 C A NUCB2 Missense_Mutation p.H174N 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 17408585 17408585 C T KCNJ11 Missense_Mutation p.D352N 0.18 tolerated(0.52) benign(0.002) TCGA-FW-A3R5-06 11 17408842 17408842 G A KCNJ11 Missense_Mutation p.P266L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 17415923 17415923 C T ABCC8 Missense_Mutation p.E1479K 0.27 deleterious(0.02) benign(0.094) TCGA-FW-A3R5-06 11 17418749 17418749 C T ABCC8 Missense_Mutation p.G1327R 0.16 deleterious(0.04) benign(0.003) TCGA-FW-A3R5-06 11 17419886 17419886 C T ABCC8 Missense_Mutation p.M1251I 0.21 tolerated(0.06) benign(0.063) TCGA-FW-A3R5-06 11 17449880 17449880 G A ABCC8 Silent p.L666L 0.17 TCGA-FW-A3R5-06 11 17449891 17449891 G A ABCC8 Missense_Mutation p.P662L 0.24 deleterious(0.03) benign(0.026) TCGA-FW-A3R5-06 11 17474704 17474704 C T ABCC8 Missense_Mutation p.A380T 0.22 tolerated(1) benign(0.05) TCGA-FW-A3R5-06 11 17482038 17482038 G A ABCC8 Silent p.P336P 0.29 TCGA-FW-A3R5-06 11 17483289 17483289 G A ABCC8 Silent p.F221F 0.26 TCGA-FW-A3R5-06 11 17496474 17496474 G A ABCC8 Silent p.F83F 0.27 TCGA-FW-A3R5-06 11 17498204 17498204 G A ABCC8 Silent p.L40L 0.19 TCGA-FW-A3R5-06 11 17522690 17522690 G A USH1C Missense_Mutation p.S763F 0.32 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-FW-A3R5-06 11 17531111 17531111 G A USH1C Missense_Mutation p.P602L 0.38 tolerated_low_confidence(0.21) benign(0.009) TCGA-FW-A3R5-06 11 17531255 17531255 G A USH1C Missense_Mutation p.P554L 0.23 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 11 17548851 17548851 C T USH1C Missense_Mutation p.G139R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 17554814 17554814 C T USH1C Missense_Mutation p.R31Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 11 1774598 1774598 G A CTSD 3'UTR 0.29 TCGA-FW-A3R5-06 11 1775232 1775232 G A CTSD Nonsense_Mutation p.Q322* 0.47 TCGA-FW-A3R5-06 11 17757553 17757553 G A KCNC1 Missense_Mutation p.G2S 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.847) TCGA-FW-A3R5-06 11 17793286 17793286 C T KCNC1 Silent p.F215F 0.31 TCGA-FW-A3R5-06 11 17793740 17793740 G A KCNC1 Missense_Mutation p.E367K 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 17793946 17793946 C T KCNC1 Silent p.I435I 0.24 TCGA-FW-A3R5-06 11 17794296 17794296 G A KCNC1 Intron 0.21 TCGA-FW-A3R5-06 11 18026017 18026017 G A SERGEF Nonsense_Mutation p.R140* 0.29 TCGA-FW-A3R5-06 11 18159409 18159409 C T MRGPRX3 Silent p.L220L 0.27 TCGA-FW-A3R5-06 11 18159571 18159571 C T MRGPRX3 Silent p.F274F 0.31 TCGA-FW-A3R5-06 11 18252957 18252957 G A SAA4 3'UTR 0.32 TCGA-FW-A3R5-06 11 18266913 18266913 G A SAA2 3'UTR 0.34 TCGA-FW-A3R5-06 11 18320445 18320445 G A HPS5 Missense_Mutation p.S353F 0.26 tolerated(0.17) benign(0.315) TCGA-FW-A3R5-06 11 18425294 18425294 C T LDHA Missense_Mutation p.P245S 0.09 tolerated(0.18) benign(0.153) TCGA-FW-A3R5-06 11 1855798 1855798 G A SYT8 5'UTR 0.36 TCGA-FW-A3R5-06 11 1856416 1856416 C T SYT8 Silent p.V41V 0.36 TCGA-FW-A3R5-06 11 18610254 18610254 C T UEVLD 5'Flank 0.35 TCGA-FW-A3R5-06 11 1862398 1862398 G A TNNI2 Silent p.R138R 0.40 TCGA-FW-A3R5-06 11 1862727 1862727 C T TNNI2 Silent p.I165I 0.24 TCGA-FW-A3R5-06 11 18735519 18735519 C T IGSF22 Missense_Mutation p.G659R 0.27 tolerated(0.53) benign(0.017) TCGA-FW-A3R5-06 11 18736157 18736157 C T IGSF22 Missense_Mutation p.V516M 0.28 deleterious(0.04) benign(0.133) TCGA-FW-A3R5-06 11 1874370 1874370 G A LSP1 5'UTR 0.27 TCGA-FW-A3R5-06 11 18751216 18751216 G A PTPN5 Silent p.I493I 0.24 TCGA-FW-A3R5-06 11 18754784 18754784 C T PTPN5 Missense_Mutation p.E406K 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-FW-A3R5-06 11 18762339 18762339 C T PTPN5 Silent p.R242R 0.21 TCGA-FW-A3R5-06 11 18763838 18763838 G A PTPN5 Silent p.L232L 0.30 TCGA-FW-A3R5-06 11 18764911 18764911 G A PTPN5 Silent p.L119L 0.61 TCGA-FW-A3R5-06 11 18793507 18793507 C T PTPN5 5'UTR 0.11 TCGA-FW-A3R5-06 11 18955590 18955590 C T MRGPRX1 Missense_Mutation p.V248I 0.28 tolerated(0.44) benign(0.026) TCGA-FW-A3R5-06 11 18955629 18955629 G A MRGPRX1 Nonsense_Mutation p.Q235* 0.31 TCGA-FW-A3R5-06 11 18955761 18955761 G A MRGPRX1 Missense_Mutation p.L191F 0.27 deleterious(0.03) possibly_damaging(0.744) TCGA-FW-A3R5-06 11 18956040 18956040 G A MRGPRX1 Missense_Mutation p.L98F 0.27 tolerated(0.72) benign(0.042) TCGA-FW-A3R5-06 11 18956173 18956173 G A MRGPRX1 Silent p.G53G 0.30 TCGA-FW-A3R5-06 11 18956201 18956201 C T MRGPRX1 Missense_Mutation p.G44E 0.29 deleterious(0.02) probably_damaging(0.989) TCGA-FW-A3R5-06 11 18956366 18956366 G A MRGPRX1 5'UTR 0.28 TCGA-FW-A3R5-06 11 18956481 18956481 C T MRGPRX1 5'UTR 0.24 TCGA-FW-A3R5-06 11 19076946 19076946 G A MRGPRX2 3'UTR 0.27 TCGA-FW-A3R5-06 11 19077169 19077169 G A MRGPRX2 Missense_Mutation p.H261Y 0.26 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 11 19077314 19077314 G A MRGPRX2 Silent p.G212G 0.36 TCGA-FW-A3R5-06 11 19207763 19207763 C T CSRP3 Silent p.K138K 0.19 TCGA-FW-A3R5-06 11 19253875 19253875 G A E2F8 Silent p.S324S 0.29 TCGA-FW-A3R5-06 11 193729 193729 G A SCGB1C1 Missense_Mutation p.D25N 0.19 tolerated(0.34) probably_damaging(0.996) TCGA-FW-A3R5-06 11 1955049 1955049 C T TNNT3 Silent p.V90V 0.20 TCGA-FW-A3R5-06 11 19955098 19955098 C T NAV2 Silent p.F459F 0.31 TCGA-FW-A3R5-06 11 20129252 20129252 C T NAV2 Missense_Mutation p.S2354L 0.29 tolerated(0.08) probably_damaging(0.98) TCGA-FW-A3R5-06 11 20181561 20181561 C T DBX1 Missense_Mutation p.E104K 0.29 tolerated(0.11) benign(0.093) TCGA-FW-A3R5-06 11 20181577 20181577 G A DBX1 Silent p.A98A 0.38 TCGA-FW-A3R5-06 11 20403763 20403763 C T HTATIP2 Missense_Mutation p.R195C 0.33 tolerated(0.05) probably_damaging(0.993) TCGA-FW-A3R5-06 11 20404709 20404709 C T HTATIP2 Silent p.A263A 0.21 TCGA-FW-A3R5-06 11 20483679 20483679 C T PRMT3 Missense_Mutation p.P409L 0.28 benign(0.052) TCGA-FW-A3R5-06 11 20623038 20623038 C T SLC6A5 Missense_Mutation p.P123S 0.24 deleterious_low_confidence(0.03) benign(0.014) TCGA-FW-A3R5-06 11 20625847 20625847 G A SLC6A5 Missense_Mutation p.D186N 0.28 deleterious(0.02) probably_damaging(0.954) TCGA-FW-A3R5-06 11 20636224 20636224 G A SLC6A5 Splice_Site p.X329_splice 0.26 TCGA-FW-A3R5-06 11 20649578 20649578 G A SLC6A5 Missense_Mutation p.G483E 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 20652291 20652291 C T SLC6A5 Silent p.F518F 0.25 TCGA-FW-A3R5-06 11 20658726 20658726 C T SLC6A5 Silent p.T582T 0.21 TCGA-FW-A3R5-06 11 20676384 20676384 G A SLC6A5 Silent p.V788V 0.31 TCGA-FW-A3R5-06 11 20959375 20959375 G A NELL1 Silent p.R347R 0.27 TCGA-FW-A3R5-06 11 2154111 2154111 G A IGF2 3'UTR 0.23 TCGA-FW-A3R5-06 11 2170415 2170415 G A INS-IGF2 Silent p.S116S 0.32 TCGA-FW-A3R5-06 11 2191098 2191098 G A TH Missense_Mutation p.P63S 0.24 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-FW-A3R5-06 11 2193006 2193006 G A TH Missense_Mutation p.P4L 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FW-A3R5-06 11 22291883 22291883 C T ANO5 Nonsense_Mutation p.R642* 0.22 TCGA-FW-A3R5-06 11 22759280 22759280 C T GAS2 Missense_Mutation p.L147F 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 2323348 2323348 G A TSPAN32 5'UTR 0.24 TCGA-FW-A3R5-06 11 2334931 2334931 G A TSPAN32 Silent p.A134A 0.40 TCGA-FW-A3R5-06 11 2335756 2335756 G A TSPAN32 Silent p.G166G 0.40 TCGA-FW-A3R5-06 11 2415372 2415372 T G CD81 Missense_Mutation p.F77V 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 2415403 2415403 C T CD81 Missense_Mutation p.S87F 0.16 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 11 2416230 2416230 C T CD81 Missense_Mutation p.A103V 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 11 2426252 2426252 C T TRPM5 Missense_Mutation p.G1138E 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.676) TCGA-FW-A3R5-06 11 2432910 2432910 G A TRPM5 Silent p.A854A 0.35 TCGA-FW-A3R5-06 11 2436207 2436207 G A TRPM5 Missense_Mutation p.P517L 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 2437145 2437145 C T TRPM5 Silent p.V373V 0.27 TCGA-FW-A3R5-06 11 2444192 2444192 C T TRPM5 Silent p.R25R 0.09 TCGA-FW-A3R5-06 11 24759824 24759824 G A LUZP2 Silent p.E103E 0.28 TCGA-FW-A3R5-06 11 25004683 25004683 G A LUZP2 Missense_Mutation p.M203I 0.29 tolerated(0.06) benign(0) TCGA-FW-A3R5-06 11 2592604 2592604 G A KCNQ1 Silent p.K218K 0.28 TCGA-FW-A3R5-06 11 2608837 2608837 C T KCNQ1 Missense_Mutation p.S389F 0.31 deleterious(0.01) probably_damaging(0.921) TCGA-FW-A3R5-06 11 2610032 2610032 C T KCNQ1 Silent p.P447P 0.20 TCGA-FW-A3R5-06 11 26586715 26586715 T A MUC15 Nonsense_Mutation p.K258* 0.17 TCGA-FW-A3R5-06 11 26586932 26586932 C T MUC15 Silent p.V185V 0.28 TCGA-FW-A3R5-06 11 26619945 26619945 G A ANO3 Missense_Mutation p.R494K 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 11 26655803 26655803 C T ANO3 Silent p.F642F 0.10 TCGA-FW-A3R5-06 11 26663466 26663466 G A ANO3 Missense_Mutation p.R722Q 0.19 deleterious(0.02) benign(0.021) TCGA-FW-A3R5-06 11 26681985 26681985 G A ANO3 Nonsense_Mutation p.W980* 0.23 TCGA-FW-A3R5-06 11 26682014 26682014 G A ANO3 3'UTR 0.16 TCGA-FW-A3R5-06 11 26692634 26692634 C T SLC5A12 3'UTR 0.08 TCGA-FW-A3R5-06 11 26695000 26695000 C T SLC5A12 Silent p.K552K 0.29 TCGA-FW-A3R5-06 11 26695003 26695003 C T SLC5A12 Silent p.K551K 0.26 TCGA-FW-A3R5-06 11 26718782 26718782 G A SLC5A12 Silent p.V323V 0.33 TCGA-FW-A3R5-06 11 26725395 26725395 C T SLC5A12 Missense_Mutation p.G209R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 26725472 26725472 C T SLC5A12 Nonsense_Mutation p.W183* 0.23 TCGA-FW-A3R5-06 11 26743007 26743007 G A SLC5A12 Silent p.F85F 0.23 TCGA-FW-A3R5-06 11 26743045 26743045 C T SLC5A12 Missense_Mutation p.E73K 0.27 deleterious(0) possibly_damaging(0.741) TCGA-FW-A3R5-06 11 26743049 26743049 A G SLC5A12 Silent p.P71P 0.27 TCGA-FW-A3R5-06 11 26743056 26743056 C T SLC5A12 Missense_Mutation p.G69E 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 26743149 26743149 G A SLC5A12 Missense_Mutation p.S38F 0.66 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 27016596 27016596 G A FIBIN Missense_Mutation p.E175K 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.561) TCGA-FW-A3R5-06 11 27077035 27077035 C T BBOX1 Missense_Mutation p.L20F 0.29 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 11 27389935 27389935 G A LGR4 Missense_Mutation p.P779S 0.22 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 11 27390186 27390186 G A LGR4 Missense_Mutation p.P695L 0.18 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 11 280753 280753 C T NLRP6 Missense_Mutation p.S340F 0.34 tolerated(0.63) probably_damaging(0.953) TCGA-FW-A3R5-06 11 284265 284265 G A NLRP6 Missense_Mutation p.R746Q 0.27 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 11 2869055 2869055 C T KCNQ1 Missense_Mutation p.S618F 0.45 tolerated(0.07) possibly_damaging(0.58) TCGA-FW-A3R5-06 11 291051 291051 C T ATHL1 Missense_Mutation p.P282S 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 11 2924572 2924572 C T SLC22A18 5'UTR 0.26 TCGA-FW-A3R5-06 11 298534 298534 G A IFITM5 Silent p.F122F 0.35 TCGA-FW-A3R5-06 11 30032327 30032327 C T KCNA4 Silent p.G633G 0.18 TCGA-FW-A3R5-06 11 30032408 30032408 C T KCNA4 Silent p.G606G 0.33 TCGA-FW-A3R5-06 11 30032457 30032457 G A KCNA4 Missense_Mutation p.P590L 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-FW-A3R5-06 11 30032617 30032617 C T KCNA4 Missense_Mutation p.G537S 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 30034149 30034149 C T KCNA4 Missense_Mutation p.R26Q 0.16 tolerated_low_confidence(0.08) unknown(0) TCGA-FW-A3R5-06 11 30255248 30255248 C T FSHB Silent p.A97A 0.33 TCGA-FW-A3R5-06 11 3040465 3040465 G A CARS Silent p.A433A 0.21 TCGA-FW-A3R5-06 11 30432985 30432985 C T MPPED2 3'UTR 0.36 TCGA-FW-A3R5-06 11 3078639 3078639 C T CARS 5'UTR 0.24 TCGA-FW-A3R5-06 11 30938508 30938508 C T DCDC1 Missense_Mutation p.E1121K 0.27 tolerated(0.43) possibly_damaging(0.486) TCGA-FW-A3R5-06 11 30938550 30938550 G A DCDC1 Nonsense_Mutation p.R1107* 0.37 TCGA-FW-A3R5-06 11 31086160 31086160 C T DCDC1 Missense_Mutation p.S816N 0.48 tolerated_low_confidence(0.3) benign(0.01) TCGA-FW-A3R5-06 11 3122903 3122903 G A OSBPL5 Silent p.A484A 0.29 TCGA-FW-A3R5-06 11 3140824 3140824 G A OSBPL5 Missense_Mutation p.P215L 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 314350 314350 C T IFITM1 Silent p.S60S 0.07 TCGA-FW-A3R5-06 11 3147762 3147762 G A OSBPL5 Missense_Mutation p.P54S 0.28 tolerated(0.63) benign(0.044) TCGA-FW-A3R5-06 11 31653928 31653928 C T ELP4 Silent p.I301I 0.35 TCGA-FW-A3R5-06 11 32125929 32125929 G A RCN1 Missense_Mutation p.E303K 0.34 tolerated(0.16) benign(0.015) TCGA-FW-A3R5-06 11 32460452 32460452 G A WT1 5'Flank 0.31 TCGA-FW-A3R5-06 11 32636038 32636038 C T CCDC73 Missense_Mutation p.G609E 0.28 tolerated(0.19) benign(0.117) TCGA-FW-A3R5-06 11 32636195 32636195 C T CCDC73 Missense_Mutation p.G557R 0.26 tolerated(0.16) benign(0.046) TCGA-FW-A3R5-06 11 32657319 32657319 C T CCDC73 Missense_Mutation p.E370K 0.27 tolerated(0.15) benign(0.084) TCGA-FW-A3R5-06 11 32705074 32705074 T A CCDC73 Intron 0.24 TCGA-FW-A3R5-06 11 32955532 32955532 C T QSER1 Missense_Mutation p.H781Y 0.23 deleterious(0.01) benign(0.424) TCGA-FW-A3R5-06 11 33374802 33374802 C T HIPK3 Silent p.L1112L 0.16 TCGA-FW-A3R5-06 11 33777415 33777415 G A FBXO3 Missense_Mutation p.L194F 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 11 33880946 33880946 C T LMO2 Missense_Mutation p.E214K 0.24 deleterious(0) possibly_damaging(0.737) TCGA-FW-A3R5-06 11 34218898 34218898 G A ABTB2 Silent p.P406P 0.46 TCGA-FW-A3R5-06 11 34668007 34668007 G A EHF Missense_Mutation p.G62D 0.45 tolerated(0.51) possibly_damaging(0.486) TCGA-FW-A3R5-06 11 34680082 34680082 C T EHF Missense_Mutation p.P226S 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 11 35336622 35336622 C T SLC1A2 Missense_Mutation p.M86I 0.47 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 35339031 35339031 C T SLC1A2 Missense_Mutation p.R17Q 0.42 tolerated(0.23) benign(0.162) TCGA-FW-A3R5-06 11 35463233 35463233 C T PAMR1 Missense_Mutation p.E294K 0.36 tolerated(0.1) possibly_damaging(0.769) TCGA-FW-A3R5-06 11 36422648 36422648 G A PRR5L 5'UTR 0.39 TCGA-FW-A3R5-06 11 36596150 36596150 C T RAG1 Silent p.S432S 0.30 TCGA-FW-A3R5-06 11 36598028 36598028 C T RAG1 3'UTR 0.10 TCGA-FW-A3R5-06 11 36598029 36598029 C T RAG1 3'UTR 0.10 TCGA-FW-A3R5-06 11 3661201 3661201 C T ART5 Missense_Mutation p.G153E 0.39 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 11 36615272 36615272 C T RAG2 Silent p.G149G 0.38 TCGA-FW-A3R5-06 11 36654959 36654959 C T C11orf74 Missense_Mutation p.R88C 0.20 tolerated(0.25) benign(0.001) TCGA-FW-A3R5-06 11 3681174 3681174 G A ART1 Missense_Mutation p.R142Q 0.34 deleterious(0.02) benign(0.327) TCGA-FW-A3R5-06 11 3681454 3681454 C T ART1 Silent p.F235F 0.33 TCGA-FW-A3R5-06 11 3682615 3682615 G A ART1 Silent p.K286K 0.31 TCGA-FW-A3R5-06 11 3712680 3712680 G A NUP98 Missense_Mutation p.P1451S 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 3721927 3721927 G A NUP98 Missense_Mutation p.L1219F 0.19 tolerated(0.18) benign(0.035) TCGA-FW-A3R5-06 11 3723942 3723942 G C NUP98 Missense_Mutation p.P1088R 0.25 tolerated(0.31) benign(0.186) TCGA-FW-A3R5-06 11 397183 397183 G A PKP3 Missense_Mutation p.G228R 0.40 deleterious(0) benign(0.247) TCGA-FW-A3R5-06 11 40136113 40136113 C T LRRC4C Missense_Mutation p.G577E 0.50 tolerated_low_confidence(0.16) benign(0.028) TCGA-FW-A3R5-06 11 40136294 40136294 G A LRRC4C Missense_Mutation p.P517S 0.42 tolerated_low_confidence(0.33) benign(0.011) TCGA-FW-A3R5-06 11 4107730 4107730 C T STIM1 Missense_Mutation p.R500W 0.19 deleterious(0.01) possibly_damaging(0.849) TCGA-FW-A3R5-06 11 431895 431895 C T ANO9 Missense_Mutation p.D140N 0.14 tolerated(0.08) benign(0.02) TCGA-FW-A3R5-06 11 43342980 43342980 C T API5 Silent p.N115N 0.30 TCGA-FW-A3R5-06 11 43852435 43852435 C T HSD17B12 Intron 0.48 TCGA-FW-A3R5-06 11 4389379 4389379 G A OR52B4 Silent p.F49F 0.29 TCGA-FW-A3R5-06 11 4389390 4389390 G A OR52B4 Silent p.L46L 0.32 TCGA-FW-A3R5-06 11 4389397 4389397 C T OR52B4 Silent p.G43G 0.29 TCGA-FW-A3R5-06 11 4389456 4389456 C T OR52B4 Missense_Mutation p.D24N 0.43 tolerated(0.07) benign(0.049) TCGA-FW-A3R5-06 11 43923211 43923211 C T ALKBH3 Missense_Mutation p.P202L 0.41 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 44148446 44148446 C T EXT2 Silent p.V373V 0.24 TCGA-FW-A3R5-06 11 44289073 44289073 G A ALX4 Missense_Mutation p.L293F 0.51 deleterious(0.01) probably_damaging(0.915) TCGA-FW-A3R5-06 11 45204610 45204610 T G PRDM11 Missense_Mutation p.I141S 0.33 tolerated(0.05) possibly_damaging(0.827) TCGA-FW-A3R5-06 11 45265663 45265663 C T SYT13 Nonsense_Mutation p.W407* 0.10 TCGA-FW-A3R5-06 11 45277287 45277287 G A SYT13 Silent p.S113S 0.30 TCGA-FW-A3R5-06 11 4566681 4566681 C T OR52M1 Silent p.F87F 0.22 TCGA-FW-A3R5-06 11 45671526 45671526 G A CHST1 Silent p.I316I 0.38 TCGA-FW-A3R5-06 11 45671761 45671761 C T CHST1 Missense_Mutation p.G238D 0.20 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 11 45671842 45671842 G A CHST1 Missense_Mutation p.P211L 0.53 tolerated(0.06) probably_damaging(0.976) TCGA-FW-A3R5-06 11 4567312 4567312 C T OR52M1 Missense_Mutation p.R298C 0.36 deleterious(0) benign(0.03) TCGA-FW-A3R5-06 11 45832766 45832766 G A SLC35C1 Silent p.T325T 0.58 TCGA-FW-A3R5-06 11 45923603 45923603 C T MAPK8IP1 Silent p.L199L 0.42 TCGA-FW-A3R5-06 11 4608361 4608361 G A OR52I2 Missense_Mutation p.V107M 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 11 4608595 4608595 G A OR52I2 Missense_Mutation p.A185T 0.29 tolerated(0.1) benign(0.01) TCGA-FW-A3R5-06 11 4615509 4615509 G A OR52I1 Missense_Mutation p.V81M 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 11 46334007 46334007 G A CREB3L1 Silent p.R295R 0.44 TCGA-FW-A3R5-06 11 46342292 46342292 C T CREB3L1 Missense_Mutation p.S519F 0.38 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FW-A3R5-06 11 46398761 46398761 C T DGKZ Missense_Mutation p.R969W 0.45 deleterious(0) benign(0.339) TCGA-FW-A3R5-06 11 46403895 46403895 G A MDK Missense_Mutation p.G43E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 46407393 46407393 C T CHRM4 Missense_Mutation p.A239T 0.50 tolerated(1) benign(0.021) TCGA-FW-A3R5-06 11 4661107 4661107 C T OR51D1 Silent p.I29I 0.27 TCGA-FW-A3R5-06 11 4661207 4661207 C T OR51D1 Missense_Mutation p.R63C 0.14 deleterious(0.04) possibly_damaging(0.577) TCGA-FW-A3R5-06 11 46686987 46686987 C T ATG13 Missense_Mutation p.H352Y 0.35 deleterious_low_confidence(0) benign(0.084) TCGA-FW-A3R5-06 11 4673781 4673781 G A OR51E1 Missense_Mutation p.E9K 0.27 tolerated(1) benign(0.038) TCGA-FW-A3R5-06 11 4674183 4674183 C T OR51E1 Missense_Mutation p.R143C 0.31 tolerated(0.09) possibly_damaging(0.827) TCGA-FW-A3R5-06 11 4674254 4674254 C T OR51E1 Silent p.I166I 0.25 TCGA-FW-A3R5-06 11 4674333 4674333 G A OR51E1 Missense_Mutation p.D193N 0.37 deleterious(0) benign(0.053) TCGA-FW-A3R5-06 11 46898811 46898811 C T LRP4 Silent p.V1072V 0.21 TCGA-FW-A3R5-06 11 46903410 46903410 C T LRP4 Missense_Mutation p.R886Q 0.12 tolerated(0.06) probably_damaging(0.943) TCGA-FW-A3R5-06 11 4703087 4703087 G A OR51E2 Silent p.V285V 0.30 TCGA-FW-A3R5-06 11 4703277 4703277 C T OR51E2 Missense_Mutation p.R222Q 0.33 tolerated(0.14) benign(0.017) TCGA-FW-A3R5-06 11 4703417 4703417 G A OR51E2 Silent p.H175H 0.28 TCGA-FW-A3R5-06 11 4703603 4703603 G A OR51E2 Silent p.I113I 0.24 TCGA-FW-A3R5-06 11 4703632 4703632 G A OR51E2 Missense_Mutation p.H104Y 0.28 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 11 4703723 4703723 G A OR51E2 Silent p.S73S 0.24 TCGA-FW-A3R5-06 11 4703934 4703934 G A OR51E2 Missense_Mutation p.S3F 0.33 deleterious(0.01) benign(0.224) TCGA-FW-A3R5-06 11 47256474 47256474 C T DDB2 Missense_Mutation p.P290L 0.46 deleterious(0.01) possibly_damaging(0.888) TCGA-FW-A3R5-06 11 47256923 47256923 C T DDB2 Missense_Mutation p.P328L 0.39 tolerated(0.43) benign(0.006) TCGA-FW-A3R5-06 11 47283522 47283522 C T NR1H3 Missense_Mutation p.T314I 0.42 tolerated(0.85) probably_damaging(0.934) TCGA-FW-A3R5-06 11 47350748 47350748 C T MADD 3'UTR 0.46 TCGA-FW-A3R5-06 11 47350749 47350749 C T MADD 3'UTR 0.47 TCGA-FW-A3R5-06 11 47358979 47358979 G A MYBPC3 Silent p.S855S 0.37 TCGA-FW-A3R5-06 11 47363609 47363609 C T MYBPC3 Missense_Mutation p.G575S 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 11 47380496 47380496 G A SPI1 Missense_Mutation p.S132L 0.56 tolerated(0.31) benign(0.2) TCGA-FW-A3R5-06 11 47436453 47436453 G A SLC39A13 Silent p.K304K 0.28 TCGA-FW-A3R5-06 11 47447451 47447451 G A PSMC3 Silent p.I42I 0.30 TCGA-FW-A3R5-06 11 47605940 47605940 C T NDUFS3 Silent p.D234D 0.40 TCGA-FW-A3R5-06 11 47605951 47605951 C T NDUFS3 Missense_Mutation p.P238L 0.30 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 11 47681694 47681694 G A AGBL2 3'UTR 0.61 TCGA-FW-A3R5-06 11 47707561 47707561 G A AGBL2 Missense_Mutation p.H558Y 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 47721096 47721096 G A AGBL2 Missense_Mutation p.P199L 0.34 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 11 4790452 4790452 G A OR51F1 Silent p.S232S 0.33 TCGA-FW-A3R5-06 11 4790832 4790833 - A OR51F1 Frame_Shift_Ins p.L106Sfs*18 0.09 TCGA-FW-A3R5-06 11 48157768 48157768 C T PTPRJ Missense_Mutation p.P598L 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 4825119 4825119 G A OR52R1 Silent p.F164F 0.12 TCGA-FW-A3R5-06 11 4825276 4825276 G A OR52R1 Missense_Mutation p.S112F 0.21 tolerated(0.12) possibly_damaging(0.897) TCGA-FW-A3R5-06 11 4825532 4825532 G A OR52R1 Nonsense_Mutation p.Q27* 0.23 TCGA-FW-A3R5-06 11 48266805 48266805 C T OR4X2 Silent p.P50P 0.37 TCGA-FW-A3R5-06 11 48285448 48285448 C T OR4X1 Silent p.F12F 0.44 TCGA-FW-A3R5-06 11 48285576 48285576 C T OR4X1 Missense_Mutation p.S55F 0.36 deleterious(0) benign(0.26) TCGA-FW-A3R5-06 11 48286021 48286021 C T OR4X1 Silent p.S203S 0.36 TCGA-FW-A3R5-06 11 48286023 48286023 T A OR4X1 Missense_Mutation p.I204N 0.37 deleterious(0) probably_damaging(0.934) TCGA-FW-A3R5-06 11 48286115 48286115 C T OR4X1 Missense_Mutation p.L235F 0.51 deleterious(0.02) possibly_damaging(0.766) TCGA-FW-A3R5-06 11 48328209 48328209 C T OR4S1 Silent p.A145A 0.47 TCGA-FW-A3R5-06 11 48328312 48328312 C T OR4S1 Missense_Mutation p.H180Y 0.52 tolerated(0.54) possibly_damaging(0.782) TCGA-FW-A3R5-06 11 48346900 48346900 G A OR4C3 Silent p.E136E 0.14 TCGA-FW-A3R5-06 11 48347430 48347430 C T OR4C3 Missense_Mutation p.T313I 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3R5-06 11 48347431 48347431 C T OR4C3 Silent p.T313T 0.18 TCGA-FW-A3R5-06 11 4842683 4842683 C T OR51F2 Missense_Mutation p.P23L 0.29 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 11 4869840 4869840 G C OR51S1 Missense_Mutation p.A200G 0.26 deleterious(0.02) benign(0.039) TCGA-FW-A3R5-06 11 4870051 4870051 G A OR51S1 Missense_Mutation p.R130W 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 4870120 4870120 G A OR51S1 Silent p.L107L 0.18 TCGA-FW-A3R5-06 11 4870387 4870387 G A OR51S1 Missense_Mutation p.P18S 0.32 tolerated(0.25) benign(0.103) TCGA-FW-A3R5-06 11 4903121 4903121 C T OR51T1 Nonsense_Mutation p.Q25* 0.27 TCGA-FW-A3R5-06 11 4903186 4903186 C T OR51T1 Silent p.F46F 0.30 TCGA-FW-A3R5-06 11 49168441 49168441 C T FOLH1 Missense_Mutation p.G707E 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 4928848 4928848 G A OR51A7 Silent p.R83R 0.22 TCGA-FW-A3R5-06 11 4929324 4929324 C T OR51A7 Missense_Mutation p.S242F 0.30 deleterious(0.01) possibly_damaging(0.488) TCGA-FW-A3R5-06 11 4935978 4935978 C T OR51G2 Missense_Mutation p.D306N 0.19 tolerated(0.49) possibly_damaging(0.468) TCGA-FW-A3R5-06 11 4936471 4936471 G A OR51G2 Silent p.L141L 0.18 TCGA-FW-A3R5-06 11 4936693 4936693 G A OR51G2 Silent p.F67F 0.31 TCGA-FW-A3R5-06 11 4936761 4936761 G A OR51G2 Missense_Mutation p.P45S 0.16 tolerated(0.16) benign(0) TCGA-FW-A3R5-06 11 4945091 4945091 G A OR51G1 Missense_Mutation p.P160L 0.30 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 4945447 4945447 G A OR51G1 Silent p.I41I 0.22 TCGA-FW-A3R5-06 11 49598400 49598400 C T RP11-707M1.1 RNA 0.56 TCGA-FW-A3R5-06 11 4967979 4967979 G A OR51A4 Silent p.L118L 0.14 TCGA-FW-A3R5-06 11 4968016 4968016 G A OR51A4 Silent p.F105F 0.25 TCGA-FW-A3R5-06 11 4968027 4968027 G A OR51A4 Nonsense_Mutation p.Q102* 0.29 TCGA-FW-A3R5-06 11 4976080 4976080 C T OR51A2 Missense_Mutation p.M288I 0.38 tolerated(0.13) benign(0.158) TCGA-FW-A3R5-06 11 4976592 4976592 G A OR51A2 Silent p.L118L 0.45 TCGA-FW-A3R5-06 11 49831551 49831551 G A RP11-707M1.1 RNA 0.44 TCGA-FW-A3R5-06 11 49831696 49831696 G A RP11-707M1.1 RNA 0.34 TCGA-FW-A3R5-06 11 49831842 49831842 C T RP11-707M1.1 RNA 0.39 TCGA-FW-A3R5-06 11 49974138 49974138 C T OR4C13 Missense_Mutation p.S55F 0.39 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-FW-A3R5-06 11 49974674 49974674 G A OR4C13 Missense_Mutation p.A234T 0.43 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 11 49974693 49974693 C T OR4C13 Missense_Mutation p.S240F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-FW-A3R5-06 11 49974783 49974783 C T OR4C13 Missense_Mutation p.A270V 0.22 deleterious_low_confidence(0.01) benign(0.247) TCGA-FW-A3R5-06 11 50003147 50003147 C T OR4C12 Silent p.R297R 0.23 TCGA-FW-A3R5-06 11 5009434 5009434 G A MMP26 5'UTR 0.26 TCGA-FW-A3R5-06 11 5011051 5011051 C T MMP26 Silent p.S91S 0.27 TCGA-FW-A3R5-06 11 5011861 5011861 C T MMP26 Silent p.S118S 0.36 TCGA-FW-A3R5-06 11 5013298 5013298 G A MMP26 Missense_Mutation p.D234N 0.28 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 11 5013342 5013342 C T MMP26 Silent p.I248I 0.32 TCGA-FW-A3R5-06 11 5020566 5020566 G A OR51L1 Silent p.L118L 0.31 TCGA-FW-A3R5-06 11 5020752 5020752 C T OR51L1 Silent p.F180F 0.15 TCGA-FW-A3R5-06 11 5068338 5068338 C T OR52J3 Missense_Mutation p.R195C 0.26 deleterious(0.01) benign(0.047) TCGA-FW-A3R5-06 11 5068408 5068408 C T OR52J3 Missense_Mutation p.S218L 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 5068442 5068442 C T OR52J3 Silent p.L229L 0.33 TCGA-FW-A3R5-06 11 5080338 5080338 G A OR52E2 Missense_Mutation p.H174Y 0.25 tolerated(0.27) benign(0.026) TCGA-FW-A3R5-06 11 5080361 5080361 A C OR52E2 Missense_Mutation p.L166W 0.21 tolerated(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 11 5080723 5080723 G A OR52E2 Silent p.F45F 0.14 TCGA-FW-A3R5-06 11 51411603 51411603 C T OR4A5 Missense_Mutation p.D265N 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 51411827 51411827 T G OR4A5 Missense_Mutation p.Y190S 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.612) TCGA-FW-A3R5-06 11 51412231 51412231 G A OR4A5 Silent p.S55S 0.23 TCGA-FW-A3R5-06 11 51412344 51412344 C T OR4A5 Missense_Mutation p.D18N 0.27 tolerated_low_confidence(0.8) benign(0.32) TCGA-FW-A3R5-06 11 51516198 51516198 C T OR4C46 Missense_Mutation p.S306L 0.32 tolerated_low_confidence(0.25) benign(0.009) TCGA-FW-A3R5-06 11 5153219 5153219 G A OR52A5 Silent p.T218T 0.34 TCGA-FW-A3R5-06 11 5153546 5153546 G A OR52A5 Silent p.F109F 0.22 TCGA-FW-A3R5-06 11 5153554 5153554 G A OR52A5 Missense_Mutation p.H107Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 5172952 5172952 G A OR52A1 Silent p.F216F 0.33 TCGA-FW-A3R5-06 11 5173285 5173285 G A OR52A1 Silent p.F105F 0.27 TCGA-FW-A3R5-06 11 5221755 5221755 C T OR51V1 Nonsense_Mutation p.W59* 0.25 TCGA-FW-A3R5-06 11 5247821 5247821 G A HBB Missense_Mutation p.P101S 0.22 deleterious(0.03) probably_damaging(0.949) TCGA-FW-A3R5-06 11 5247885 5247885 C T HBB Silent p.L79L 0.19 TCGA-FW-A3R5-06 11 5247968 5247968 G A HBB Missense_Mutation p.P52S 0.23 tolerated(0.22) benign(0.007) TCGA-FW-A3R5-06 11 5254020 5254020 C T HBD 3'Flank 0.42 TCGA-FW-A3R5-06 11 5264417 5264417 G A HBG1 3'Flank 0.21 TCGA-FW-A3R5-06 11 5275566 5275566 C T HBG2 Missense_Mutation p.E91K 0.17 tolerated(0.21) possibly_damaging(0.822) TCGA-FW-A3R5-06 11 5275656 5275656 C T HBG2 Missense_Mutation p.V61I 0.20 tolerated(0.1) benign(0.06) TCGA-FW-A3R5-06 11 5291142 5291142 C T HBE1 5'UTR 0.15 TCGA-FW-A3R5-06 11 5322321 5322321 G A OR51B4 Missense_Mutation p.P286S 0.16 deleterious(0.02) probably_damaging(0.97) TCGA-FW-A3R5-06 11 5323135 5323135 G A OR51B4 Silent p.G14G 0.23 TCGA-FW-A3R5-06 11 5344754 5344754 G A OR51B2 Silent p.F258F 0.17 TCGA-FW-A3R5-06 11 5344952 5344952 G A OR51B2 Silent p.F192F 0.30 TCGA-FW-A3R5-06 11 5363817 5363817 C T OR51B5 Silent p.%3D 0.09 TCGA-FW-A3R5-06 11 5363912 5363912 G A OR51B5 Silent p.F281F 0.30 TCGA-FW-A3R5-06 11 5364116 5364116 G A OR51B5 Silent p.F213F 0.31 TCGA-FW-A3R5-06 11 5364297 5364297 G A OR51B5 Missense_Mutation p.S153F 0.22 tolerated(0.71) benign(0.031) TCGA-FW-A3R5-06 11 5364688 5364688 G A OR51B5 Missense_Mutation p.H23Y 0.20 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 11 5411015 5411015 G A OR51M1 Missense_Mutation p.M129I 0.24 deleterious(0.05) benign(0) TCGA-FW-A3R5-06 11 5443492 5443492 G A OR51Q1 Missense_Mutation p.G21E 0.22 deleterious(0.01) possibly_damaging(0.839) TCGA-FW-A3R5-06 11 5443930 5443930 G A OR51Q1 Missense_Mutation p.R167Q 0.32 tolerated(0.08) benign(0.229) TCGA-FW-A3R5-06 11 5444075 5444075 C T OR51Q1 Silent p.L215L 0.23 TCGA-FW-A3R5-06 11 5461798 5461798 C T HBE1 Intron 0.27 TCGA-FW-A3R5-06 11 5462037 5462037 C T OR51I1 Silent p.R236R 0.27 TCGA-FW-A3R5-06 11 5474840 5474840 G A OR51I2 Missense_Mutation p.G41E 0.34 deleterious(0) possibly_damaging(0.543) TCGA-FW-A3R5-06 11 5475583 5475583 C T OR51I2 Missense_Mutation p.P289S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 55032413 55032413 G A TRIM48 Missense_Mutation p.E28K 0.57 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 11 55032589 55032589 G A TRIM48 Silent p.L86L 0.53 TCGA-FW-A3R5-06 11 55065577 55065577 C T TRIM51HP RNA 0.29 TCGA-FW-A3R5-06 11 55065578 55065578 C T TRIM51HP RNA 0.29 TCGA-FW-A3R5-06 11 55065620 55065620 G C TRIM51HP RNA 0.23 TCGA-FW-A3R5-06 11 55065679 55065679 G A TRIM51HP RNA 0.35 TCGA-FW-A3R5-06 11 55110892 55110892 C T OR4A16 Silent p.S72S 0.26 TCGA-FW-A3R5-06 11 55111096 55111096 C T OR4A16 Silent p.I140I 0.31 TCGA-FW-A3R5-06 11 55111166 55111166 C T OR4A16 Silent p.L164L 0.17 TCGA-FW-A3R5-06 11 55135647 55135647 C T OR4A15 Silent p.F96F 0.25 TCGA-FW-A3R5-06 11 55135705 55135705 G A OR4A15 Missense_Mutation p.E116K 0.32 tolerated_low_confidence(0.12) benign(0.023) TCGA-FW-A3R5-06 11 55136093 55136093 C T OR4A15 Missense_Mutation p.S245F 0.28 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-FW-A3R5-06 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.31 tolerated_low_confidence(0.06) benign(0.19) TCGA-FW-A3R5-06 11 55136211 55136211 C T OR4A15 Silent p.F284F 0.24 TCGA-FW-A3R5-06 11 5529496 5529496 C T UBQLN3 Silent p.G431G 0.32 TCGA-FW-A3R5-06 11 5529732 5529732 G A UBQLN3 Missense_Mutation p.P353S 0.32 tolerated(0.12) benign(0.063) TCGA-FW-A3R5-06 11 55322440 55322440 C T OR4C15 Missense_Mutation p.P220S 0.16 deleterious_low_confidence(0.03) benign(0.155) TCGA-FW-A3R5-06 11 55322479 55322479 G A OR4C15 Missense_Mutation p.D233N 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 55322559 55322559 C T OR4C15 Silent p.I259I 0.35 TCGA-FW-A3R5-06 11 55322672 55322672 T C OR4C15 Missense_Mutation p.I297T 0.26 deleterious_low_confidence(0) benign(0.065) TCGA-FW-A3R5-06 11 55322829 55322829 G A OR4C15 Silent p.Q349Q 0.29 TCGA-FW-A3R5-06 11 55339669 55339669 G A OR4C16 Silent p.K22K 0.13 TCGA-FW-A3R5-06 11 55340173 55340173 C T OR4C16 Silent p.T190T 0.19 TCGA-FW-A3R5-06 11 55340191 55340191 C T OR4C16 Silent p.L196L 0.31 TCGA-FW-A3R5-06 11 5537083 5537083 C T UBQLNL Missense_Mutation p.E197K 0.27 tolerated(0.08) benign(0.019) TCGA-FW-A3R5-06 11 5537102 5537102 G A UBQLNL Silent p.F190F 0.39 TCGA-FW-A3R5-06 11 55371088 55371088 G A OR4C11 Silent p.F254F 0.09 TCGA-FW-A3R5-06 11 55371562 55371562 C T OR4C11 Missense_Mutation p.M96I 0.36 tolerated(0.19) benign(0.014) TCGA-FW-A3R5-06 11 5537224 5537224 G A UBQLNL Missense_Mutation p.H150Y 0.09 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 5537225 5537225 G A UBQLNL Silent p.A149A 0.08 TCGA-FW-A3R5-06 11 5537337 5537337 G A UBQLNL Missense_Mutation p.S112F 0.20 deleterious(0.04) possibly_damaging(0.888) TCGA-FW-A3R5-06 11 55406212 55406212 C T OR4P4 Missense_Mutation p.P127S 0.22 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 11 55406213 55406213 C T OR4P4 Missense_Mutation p.P127L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 11 55406335 55406335 G A OR4P4 Missense_Mutation p.G168S 0.29 deleterious(0.02) possibly_damaging(0.831) TCGA-FW-A3R5-06 11 55418468 55418468 C T OR4S2 Missense_Mutation p.S30F 0.18 deleterious(0.04) benign(0.006) TCGA-FW-A3R5-06 11 55419267 55419267 G A OR4S2 Missense_Mutation p.M296I 0.26 tolerated(0.13) benign(0.002) TCGA-FW-A3R5-06 11 55419298 55419298 G A OR4S2 Missense_Mutation p.E307K 0.25 tolerated(0.48) benign(0.001) TCGA-FW-A3R5-06 11 55432786 55432786 C T OR4C6 Silent p.I48I 0.09 TCGA-FW-A3R5-06 11 55433090 55433090 G A OR4C6 Missense_Mutation p.G150R 0.20 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-FW-A3R5-06 11 55541132 55541132 C T OR5D13 Silent p.F73F 0.25 TCGA-FW-A3R5-06 11 55541273 55541273 G A OR5D13 Missense_Mutation p.M120I 0.26 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 11 55541538 55541538 G A OR5D13 Missense_Mutation p.E209K 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-FW-A3R5-06 11 55563286 55563286 G A OR5D14 Silent p.E85E 0.21 TCGA-FW-A3R5-06 11 55578978 55578978 C T OR5L1 Silent p.F12F 0.26 TCGA-FW-A3R5-06 11 55579461 55579461 G A OR5L1 Silent p.V173V 0.27 TCGA-FW-A3R5-06 11 55579837 55579837 G A OR5L1 Missense_Mutation p.E299K 0.28 tolerated(0.14) benign(0.005) TCGA-FW-A3R5-06 11 55587557 55587557 C T OR5D18 Missense_Mutation p.A151V 0.19 tolerated(0.39) benign(0.008) TCGA-FW-A3R5-06 11 55587558 55587558 C T OR5D18 Silent p.A151A 0.19 TCGA-FW-A3R5-06 11 55587646 55587646 G A OR5D18 Missense_Mutation p.E181K 0.24 deleterious(0.01) benign(0.182) TCGA-FW-A3R5-06 11 55587768 55587768 C T OR5D18 Silent p.F221F 0.24 TCGA-FW-A3R5-06 11 55587930 55587930 C T OR5D18 Silent p.A275A 0.12 TCGA-FW-A3R5-06 11 55594959 55594959 G A OR5L2 Missense_Mutation p.D89N 0.27 tolerated(0.25) benign(0.037) TCGA-FW-A3R5-06 11 55595213 55595213 G A OR5L2 Silent p.V173V 0.25 TCGA-FW-A3R5-06 11 55595313 55595313 G A OR5L2 Missense_Mutation p.E207K 0.28 tolerated(0.06) benign(0.025) TCGA-FW-A3R5-06 11 55595369 55595369 C T OR5L2 Silent p.I225I 0.29 TCGA-FW-A3R5-06 11 556039 556039 G A C11orf35 Missense_Mutation p.S445F 0.28 deleterious(0.04) probably_damaging(0.972) TCGA-FW-A3R5-06 11 55606458 55606458 C T OR5D16 Silent p.S77S 0.28 TCGA-FW-A3R5-06 11 55606482 55606482 G A OR5D16 Silent p.V85V 0.31 TCGA-FW-A3R5-06 11 55606647 55606647 G A OR5D16 Silent p.Q140Q 0.33 TCGA-FW-A3R5-06 11 55606746 55606746 C T OR5D16 Silent p.F173F 0.11 TCGA-FW-A3R5-06 11 55606842 55606842 C T OR5D16 Silent p.A205A 0.23 TCGA-FW-A3R5-06 11 55652907 55652907 G A TRIM51 Translation_Start_Site p.M1? 0.22 deleterious(0.01) possibly_damaging(0.578) TCGA-FW-A3R5-06 11 55652961 55652961 G A TRIM51 Missense_Mutation p.M19I 0.28 deleterious(0.03) possibly_damaging(0.61) TCGA-FW-A3R5-06 11 55653197 55653197 A T TRIM51 Missense_Mutation p.E98V 0.23 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 11 55655605 55655605 G A TRIM51 Missense_Mutation p.R202Q 0.19 tolerated(0.57) benign(0.001) TCGA-FW-A3R5-06 11 55655610 55655610 G A TRIM51 Missense_Mutation p.E204K 0.31 tolerated(0.2) benign(0.029) TCGA-FW-A3R5-06 11 55658779 55658779 G A TRIM51 Missense_Mutation p.E344K 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-FW-A3R5-06 11 5566086 5566086 G A OR52H1 Missense_Mutation p.A223V 0.32 tolerated(0.17) benign(0.12) TCGA-FW-A3R5-06 11 5566226 5566226 G A OR52H1 Silent p.F176F 0.32 TCGA-FW-A3R5-06 11 5566459 5566459 C T OR52H1 Missense_Mutation p.E99K 0.38 tolerated(0.11) benign(0.002) TCGA-FW-A3R5-06 11 5566641 5566641 G A OR52H1 Missense_Mutation p.P38L 0.33 deleterious(0.02) benign(0.02) TCGA-FW-A3R5-06 11 55681549 55681549 C T OR5W2 Silent p.G170G 0.10 TCGA-FW-A3R5-06 11 55681681 55681681 G A OR5W2 Silent p.I126I 0.38 TCGA-FW-A3R5-06 11 55703333 55703333 C T OR5I1 Missense_Mutation p.D182N 0.19 deleterious(0.01) possibly_damaging(0.657) TCGA-FW-A3R5-06 11 55703443 55703443 C T OR5I1 Missense_Mutation p.R145Q 0.29 tolerated(0.88) benign(0.261) TCGA-FW-A3R5-06 11 55703507 55703507 G A OR5I1 Missense_Mutation p.R124C 0.22 deleterious(0.01) benign(0.003) TCGA-FW-A3R5-06 11 55703819 55703819 G A OR5I1 Missense_Mutation p.P20S 0.23 tolerated(0.62) benign(0.007) TCGA-FW-A3R5-06 11 55735076 55735076 G A OR10AG1 Silent p.I288I 0.17 TCGA-FW-A3R5-06 11 55735154 55735154 C T OR10AG1 Silent p.G262G 0.24 TCGA-FW-A3R5-06 11 55735176 55735176 G A OR10AG1 Missense_Mutation p.P255L 0.32 deleterious(0.01) benign(0.245) TCGA-FW-A3R5-06 11 55761311 55761311 G A OR5F1 Missense_Mutation p.S264F 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-FW-A3R5-06 11 55761363 55761363 C T OR5F1 Missense_Mutation p.A247T 0.11 tolerated(0.07) possibly_damaging(0.654) TCGA-FW-A3R5-06 11 55761768 55761768 A G OR5F1 Missense_Mutation p.C112R 0.27 deleterious(0) possibly_damaging(0.873) TCGA-FW-A3R5-06 11 55762066 55762066 G A OR5F1 Silent p.F12F 0.25 TCGA-FW-A3R5-06 11 55798094 55798094 C T OR5AS1 Missense_Mutation p.S67F 0.33 deleterious(0) possibly_damaging(0.907) TCGA-FW-A3R5-06 11 55798442 55798442 C T OR5AS1 Missense_Mutation p.P183L 0.22 deleterious(0.03) probably_damaging(0.92) TCGA-FW-A3R5-06 11 55860969 55860969 C T OR8I2 Silent p.F62F 0.16 TCGA-FW-A3R5-06 11 55861330 55861330 C T OR8I2 Missense_Mutation p.L183F 0.23 deleterious(0.01) possibly_damaging(0.862) TCGA-FW-A3R5-06 11 55861395 55861395 C T OR8I2 Silent p.F204F 0.20 TCGA-FW-A3R5-06 11 55872836 55872836 C T OR8H2 Silent p.F106F 0.28 TCGA-FW-A3R5-06 11 55872865 55872865 C T OR8H2 Missense_Mutation p.S116F 0.26 deleterious(0) probably_damaging(0.966) TCGA-FW-A3R5-06 11 55872882 55872882 C T OR8H2 Missense_Mutation p.R122C 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-FW-A3R5-06 11 55872953 55872953 C T OR8H2 Silent p.I145I 0.26 TCGA-FW-A3R5-06 11 55873178 55873178 C T OR8H2 Silent p.F220F 0.31 TCGA-FW-A3R5-06 11 55873207 55873207 C T OR8H2 Missense_Mutation p.S230F 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 55873228 55873228 C T OR8H2 Missense_Mutation p.A237V 0.20 deleterious(0.01) possibly_damaging(0.764) TCGA-FW-A3R5-06 11 55873438 55873438 G A OR8H2 Missense_Mutation p.R307K 0.25 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 55890739 55890739 G A OR8H3 Silent p.V297V 0.33 TCGA-FW-A3R5-06 11 55904562 55904562 C T OR8J3 Missense_Mutation p.M211I 0.15 tolerated(0.09) benign(0.004) TCGA-FW-A3R5-06 11 55904769 55904769 G A OR8J3 Silent p.L142L 0.20 TCGA-FW-A3R5-06 11 55904960 55904960 G A OR8J3 Missense_Mutation p.P79S 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 55905119 55905119 G A OR8J3 Missense_Mutation p.P26S 0.23 deleterious(0.02) possibly_damaging(0.838) TCGA-FW-A3R5-06 11 55926894 55926894 G T OR8K5 Silent p.A300A 0.16 TCGA-FW-A3R5-06 11 55927463 55927463 C T OR8K5 Missense_Mutation p.E111K 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 56000536 56000536 C T OR5T2 Missense_Mutation p.M42I 0.31 deleterious(0.03) benign(0.032) TCGA-FW-A3R5-06 11 56020050 56020050 C T OR5T3 Silent p.I125I 0.26 TCGA-FW-A3R5-06 11 56020463 56020463 G A OR5T3 Missense_Mutation p.G263E 0.28 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 11 56020498 56020498 C T OR5T3 Silent p.L275L 0.27 TCGA-FW-A3R5-06 11 5602104 5602104 C T HBG2 Intron 0.28 TCGA-FW-A3R5-06 11 5602589 5602589 G A OR52B6 Silent p.G161G 0.25 TCGA-FW-A3R5-06 11 56043528 56043528 C T OR5T1 Silent p.I138I 0.34 TCGA-FW-A3R5-06 11 56043908 56043908 G A OR5T1 Missense_Mutation p.G265E 0.28 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 56057736 56057736 C T OR8H1 Missense_Mutation p.G268E 0.27 deleterious(0.03) probably_damaging(0.954) TCGA-FW-A3R5-06 11 56057844 56057844 C T OR8H1 Missense_Mutation p.G232E 0.33 deleterious(0) possibly_damaging(0.539) TCGA-FW-A3R5-06 11 56058019 56058019 G A OR8H1 Missense_Mutation p.R174C 0.27 deleterious(0.01) possibly_damaging(0.601) TCGA-FW-A3R5-06 11 56058286 56058286 A C OR8H1 Missense_Mutation p.L85V 0.27 deleterious(0.02) possibly_damaging(0.685) TCGA-FW-A3R5-06 11 56085986 56085986 C T OR8K3 Silent p.F68F 0.28 TCGA-FW-A3R5-06 11 56086308 56086308 C T OR8K3 Missense_Mutation p.H176Y 0.24 tolerated_low_confidence(0.09) benign(0.396) TCGA-FW-A3R5-06 11 56113718 56113718 C T OR8K1 Silent p.F68F 0.23 TCGA-FW-A3R5-06 11 56114291 56114291 G A OR8K1 Silent p.G259G 0.11 TCGA-FW-A3R5-06 11 56127839 56127839 G A OR8J1 Missense_Mutation p.M39I 0.29 deleterious(0.03) benign(0.001) TCGA-FW-A3R5-06 11 56127840 56127840 G A OR8J1 Missense_Mutation p.A40T 0.31 tolerated(0.19) benign(0.003) TCGA-FW-A3R5-06 11 56127844 56127844 G A OR8J1 Missense_Mutation p.G41E 0.29 deleterious(0) benign(0.242) TCGA-FW-A3R5-06 11 56128269 56128269 C T OR8J1 Missense_Mutation p.P183S 0.30 deleterious(0.02) possibly_damaging(0.483) TCGA-FW-A3R5-06 11 56143959 56143959 C T OR8U1 Missense_Mutation p.P287L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 11 56230224 56230224 G A OR5M9 Silent p.L218L 0.22 TCGA-FW-A3R5-06 11 56230746 56230746 G A OR5M9 Silent p.I44I 0.24 TCGA-FW-A3R5-06 11 56237167 56237167 C T OR5M3 Silent p.G269G 0.15 TCGA-FW-A3R5-06 11 56237279 56237279 C T OR5M3 Missense_Mutation p.R232K 0.27 tolerated(0.06) possibly_damaging(0.856) TCGA-FW-A3R5-06 11 56237944 56237944 G A OR5M3 Silent p.F10F 0.21 TCGA-FW-A3R5-06 11 56258156 56258156 C T OR5M8 Missense_Mutation p.E231K 0.10 tolerated(0.07) benign(0.236) TCGA-FW-A3R5-06 11 56258362 56258362 G A OR5M8 Missense_Mutation p.T162I 0.23 deleterious(0.01) possibly_damaging(0.517) TCGA-FW-A3R5-06 11 56258375 56258375 C T OR5M8 Missense_Mutation p.E158K 0.27 deleterious(0.02) benign(0.081) TCGA-FW-A3R5-06 11 5625954 5625954 G A TRIM6 Intron 0.25 TCGA-FW-A3R5-06 11 5626711 5626711 G A TRIM6 Missense_Mutation p.D250N 0.27 deleterious(0.03) benign(0.041) TCGA-FW-A3R5-06 11 5626743 5626743 G A TRIM6 Silent p.E260E 0.21 TCGA-FW-A3R5-06 11 56310108 56310108 G A OR5M11 Missense_Mutation p.S209F 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 56344279 56344279 C T OR5M10 Missense_Mutation p.G307R 0.26 tolerated(0.78) benign(0.002) TCGA-FW-A3R5-06 11 56344390 56344390 C T OR5M10 Missense_Mutation p.E270K 0.25 tolerated(0.14) possibly_damaging(0.771) TCGA-FW-A3R5-06 11 56344463 56344463 C T OR5M10 Silent p.L245L 0.07 TCGA-FW-A3R5-06 11 56380062 56380062 C A OR5M1 Missense_Mutation p.R306M 0.12 deleterious(0.04) benign(0.013) TCGA-FW-A3R5-06 11 56380251 56380251 G A OR5M1 Missense_Mutation p.S243F 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 56380453 56380453 G A OR5M1 Missense_Mutation p.H176Y 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 11 56380486 56380486 G A OR5M1 Missense_Mutation p.H165Y 0.25 tolerated(0.08) possibly_damaging(0.723) TCGA-FW-A3R5-06 11 56380880 56380880 C T OR5M1 Silent p.A33A 0.37 TCGA-FW-A3R5-06 11 56409163 56409163 G A OR5AP2 Silent p.L251L 0.27 TCGA-FW-A3R5-06 11 56409824 56409824 C T OR5AP2 Missense_Mutation p.G31E 0.08 tolerated(0.06) benign(0.021) TCGA-FW-A3R5-06 11 56431164 56431164 G A OR5AR1 Translation_Start_Site p.M1? 0.21 deleterious(0.04) probably_damaging(0.937) TCGA-FW-A3R5-06 11 56431918 56431918 G A OR5AR1 Missense_Mutation p.G253S 0.07 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 56468244 56468244 G A OR9G1 Silent p.K127K 0.15 TCGA-FW-A3R5-06 11 56468488 56468488 C T OR9G1 Missense_Mutation p.P209S 0.07 tolerated(0.81) benign(0.088) TCGA-FW-A3R5-06 11 56468546 56468546 C T OR9G1 Missense_Mutation p.S228F 0.15 deleterious(0) benign(0.285) TCGA-FW-A3R5-06 11 56510379 56510379 G A OR9G4 Silent p.L303L 0.28 TCGA-FW-A3R5-06 11 56510452 56510452 G A OR9G4 Missense_Mutation p.S279F 0.29 deleterious(0.01) benign(0.076) TCGA-FW-A3R5-06 11 56510576 56510576 G A OR9G4 Silent p.L238L 0.09 TCGA-FW-A3R5-06 11 56511246 56511246 C T OR9G4 Silent p.V14V 0.24 TCGA-FW-A3R5-06 11 5655066 5655066 G A TRIM34 Silent p.K152K 0.15 TCGA-FW-A3R5-06 11 5664387 5664387 G A TRIM34 Silent p.L305L 0.29 TCGA-FW-A3R5-06 11 5664531 5664531 G A TRIM34 Silent p.V353V 0.27 TCGA-FW-A3R5-06 11 56756466 56756466 C T OR5AK2 Silent p.I26I 0.19 TCGA-FW-A3R5-06 11 56756742 56756742 G A OR5AK2 Missense_Mutation p.M118I 0.37 deleterious(0) possibly_damaging(0.459) TCGA-FW-A3R5-06 11 56757189 56757189 C T OR5AK2 Silent p.S267S 0.31 TCGA-FW-A3R5-06 11 56757193 56757193 G A OR5AK2 Missense_Mutation p.E269K 0.34 deleterious(0.05) possibly_damaging(0.654) TCGA-FW-A3R5-06 11 5686003 5686003 G A TRIM5 3'UTR 0.34 TCGA-FW-A3R5-06 11 5687273 5687273 G A TRIM5 Missense_Mutation p.P269L 0.25 tolerated(0.09) benign(0.012) TCGA-FW-A3R5-06 11 56949299 56949299 C T LRRC55 5'UTR 0.26 TCGA-FW-A3R5-06 11 56949917 56949917 C T LRRC55 Missense_Mutation p.H184Y 0.34 deleterious(0.03) benign(0.359) TCGA-FW-A3R5-06 11 56950108 56950108 G A LRRC55 Missense_Mutation p.M247I 0.25 tolerated(0.14) benign(0.121) TCGA-FW-A3R5-06 11 56954746 56954746 C T LRRC55 Missense_Mutation p.P273L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 56954855 56954855 C T LRRC55 Silent p.F309F 0.22 TCGA-FW-A3R5-06 11 57003330 57003330 C T APLNR 3'UTR 0.21 TCGA-FW-A3R5-06 11 57003331 57003331 C T APLNR 3'UTR 0.21 TCGA-FW-A3R5-06 11 57003639 57003639 G A APLNR Silent p.P280P 0.27 TCGA-FW-A3R5-06 11 57003810 57003810 G A APLNR Silent p.F223F 0.23 TCGA-FW-A3R5-06 11 57003966 57003966 C T APLNR Silent p.G171G 0.28 TCGA-FW-A3R5-06 11 57004472 57004472 C T APLNR Missense_Mutation p.E3K 0.36 tolerated_low_confidence(0.23) benign(0.046) TCGA-FW-A3R5-06 11 57004511 57004511 C T APLNR 5'UTR 0.15 TCGA-FW-A3R5-06 11 57069596 57069596 G A TNKS1BP1 Silent p.L1596L 0.28 TCGA-FW-A3R5-06 11 57070091 57070091 G A TNKS1BP1 Missense_Mutation p.P1509S 0.13 deleterious(0.04) benign(0.075) TCGA-FW-A3R5-06 11 57080136 57080136 G A TNKS1BP1 Missense_Mutation p.P676S 0.28 tolerated(0.67) benign(0.001) TCGA-FW-A3R5-06 11 57117372 57117372 G A P2RX3 Silent p.T235T 0.30 TCGA-FW-A3R5-06 11 57117373 57117373 G A P2RX3 Splice_Site p.X235_splice 0.30 TCGA-FW-A3R5-06 11 57118354 57118354 C T P2RX3 Missense_Mutation p.S275F 0.19 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 57135874 57135874 C T P2RX3 Silent p.I322I 0.20 TCGA-FW-A3R5-06 11 57137380 57137380 C T P2RX3 Silent p.I368I 0.09 TCGA-FW-A3R5-06 11 57137481 57137481 C T P2RX3 3'UTR 0.23 TCGA-FW-A3R5-06 11 57146261 57146261 C T PRG3 Missense_Mutation p.G134S 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-FW-A3R5-06 11 57235131 57235131 G A RTN4RL2 Silent p.A27A 0.20 TCGA-FW-A3R5-06 11 57256424 57256424 G A SLC43A1 Silent p.F458F 0.15 TCGA-FW-A3R5-06 11 57261486 57261486 G A SLC43A1 Missense_Mutation p.T284I 0.33 tolerated(0.24) benign(0.003) TCGA-FW-A3R5-06 11 57268309 57268309 G A SLC43A1 Silent p.F136F 0.30 TCGA-FW-A3R5-06 11 5730807 5730807 C T TRIM22 Nonsense_Mutation p.R476* 0.23 TCGA-FW-A3R5-06 11 5730827 5730827 C T TRIM22 Silent p.F482F 0.16 TCGA-FW-A3R5-06 11 57310132 57310132 G A SMTNL1 Missense_Mutation p.G24E 0.17 tolerated(0.26) benign(0.007) TCGA-FW-A3R5-06 11 57310133 57310133 G A SMTNL1 Silent p.G24G 0.17 TCGA-FW-A3R5-06 11 57310209 57310209 G A SMTNL1 Missense_Mutation p.E50K 0.17 deleterious(0.04) benign(0.012) TCGA-FW-A3R5-06 11 57313798 57313798 G A SMTNL1 Missense_Mutation p.R407Q 0.23 deleterious(0.04) possibly_damaging(0.678) TCGA-FW-A3R5-06 11 57317578 57317578 A T SMTNL1 Missense_Mutation p.K511M 0.35 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 11 57367553 57367553 G A SERPING1 Missense_Mutation p.E85K 0.16 tolerated(0.25) benign(0.292) TCGA-FW-A3R5-06 11 57379309 57379309 G A SERPING1 Missense_Mutation p.M383I 0.26 deleterious(0.05) benign(0.148) TCGA-FW-A3R5-06 11 57413472 57413472 C T YPEL4 Silent p.K122K 0.33 TCGA-FW-A3R5-06 11 57427291 57427291 C T CLP1 Missense_Mutation p.P115S 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 5757959 5757959 C T OR56B1 Silent p.F71F 0.22 TCGA-FW-A3R5-06 11 5758549 5758549 C T OR56B1 Missense_Mutation p.S268L 0.28 tolerated(0.28) possibly_damaging(0.864) TCGA-FW-A3R5-06 11 5758568 5758568 G A OR56B1 Silent p.E274E 0.19 TCGA-FW-A3R5-06 11 5776016 5776016 C T OR52N4 Silent p.L16L 0.31 TCGA-FW-A3R5-06 11 5776054 5776054 G A OR52N4 Nonsense_Mutation p.W28* 0.29 TCGA-FW-A3R5-06 11 5776262 5776262 G A OR52N4 Missense_Mutation p.E98K 0.24 deleterious(0.01) benign(0.097) TCGA-FW-A3R5-06 11 5776758 5776758 C T OR52N4 Missense_Mutation p.S263F 0.24 deleterious(0.04) benign(0.013) TCGA-FW-A3R5-06 11 57947100 57947100 C T OR9Q1 Missense_Mutation p.L62F 0.16 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 11 57970781 57970781 G A OR1S2 Silent p.F291F 0.32 TCGA-FW-A3R5-06 11 57970952 57970952 G A OR1S2 Silent p.I234I 0.27 TCGA-FW-A3R5-06 11 57982295 57982295 C T OR1S1 Missense_Mutation p.L27F 0.29 deleterious(0.01) possibly_damaging(0.728) TCGA-FW-A3R5-06 11 5798909 5798909 C T OR52N5 Missense_Mutation p.G319D 0.61 tolerated(0.2) benign(0.104) TCGA-FW-A3R5-06 11 5799018 5799018 G A OR52N5 Missense_Mutation p.H283Y 0.64 deleterious(0) benign(0.4) TCGA-FW-A3R5-06 11 57995648 57995648 G A OR10Q1 Missense_Mutation p.R234C 0.29 tolerated(0.08) benign(0.02) TCGA-FW-A3R5-06 11 58034458 58034458 G A OR10W1 Silent p.A291A 0.28 TCGA-FW-A3R5-06 11 58035215 58035215 G A OR10W1 Missense_Mutation p.S39F 0.27 deleterious(0.04) possibly_damaging(0.553) TCGA-FW-A3R5-06 11 58125676 58125676 G A OR5B17 Silent p.T289T 0.31 TCGA-FW-A3R5-06 11 58170118 58170118 G A OR5B3 Silent p.F255F 0.18 TCGA-FW-A3R5-06 11 58170406 58170406 C T OR5B3 Silent p.G159G 0.17 TCGA-FW-A3R5-06 11 58170503 58170503 G A OR5B3 Missense_Mutation p.P127L 0.31 deleterious_low_confidence(0) benign(0.417) TCGA-FW-A3R5-06 11 58189862 58189862 C T OR5B2 Silent p.R291R 0.33 TCGA-FW-A3R5-06 11 58190468 58190468 G A OR5B2 Silent p.V89V 0.28 TCGA-FW-A3R5-06 11 58207358 58207358 G A OR5B12 Silent p.F89F 0.28 TCGA-FW-A3R5-06 11 58207538 58207538 G A OR5B12 Silent p.F29F 0.20 TCGA-FW-A3R5-06 11 5841610 5841610 C T OR52N2 Silent p.I15I 0.15 TCGA-FW-A3R5-06 11 5841957 5841957 C T OR52N2 Missense_Mutation p.P131L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 5842090 5842090 C T OR52N2 Silent p.F175F 0.25 TCGA-FW-A3R5-06 11 5842129 5842129 G A OR52N2 Silent p.K188K 0.19 TCGA-FW-A3R5-06 11 5842169 5842169 C T OR52N2 Silent p.L202L 0.26 TCGA-FW-A3R5-06 11 5842311 5842311 C T OR52N2 Missense_Mutation p.S249F 0.09 deleterious(0) benign(0.013) TCGA-FW-A3R5-06 11 58477137 58477137 C T GLYAT 3'UTR 0.28 TCGA-FW-A3R5-06 11 58604639 58604639 C T GLYATL2 Missense_Mutation p.G109S 0.28 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 11 5862608 5862608 G A OR52E6 Missense_Mutation p.R174C 0.27 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 11 5863040 5863040 C T OR52E6 Missense_Mutation p.G30R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 58711073 58711073 G A GLYATL1 Missense_Mutation p.E28K 0.22 tolerated_low_confidence(0.84) benign(0.001) TCGA-FW-A3R5-06 11 58711093 58711093 G A GLYATL1 Silent p.Q34Q 0.24 TCGA-FW-A3R5-06 11 58711094 58711094 G A GLYATL1 Missense_Mutation p.D35N 0.25 tolerated(0.45) possibly_damaging(0.629) TCGA-FW-A3R5-06 11 58722323 58722323 G A GLYATL1 Silent p.L120L 0.32 TCGA-FW-A3R5-06 11 58723158 58723158 G A GLYATL1 Silent p.G220G 0.17 TCGA-FW-A3R5-06 11 58723410 58723410 C T GLYATL1 Silent p.S304S 0.20 TCGA-FW-A3R5-06 11 58723613 58723613 G A GLYATL1 3'UTR 0.23 TCGA-FW-A3R5-06 11 5878886 5878886 G A OR52E8 Missense_Mutation p.S16F 0.26 tolerated(0.21) benign(0.046) TCGA-FW-A3R5-06 11 58920793 58920793 C T FAM111A Missense_Mutation p.S551L 0.31 deleterious(0.02) probably_damaging(0.914) TCGA-FW-A3R5-06 11 58978287 58978287 C T MPEG1 Silent p.K684K 0.23 TCGA-FW-A3R5-06 11 58980191 58980191 C T MPEG1 Missense_Mutation p.G50S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 58980192 58980192 C T MPEG1 Silent p.G49G 0.31 TCGA-FW-A3R5-06 11 5906301 5906301 T A OR52E4 Missense_Mutation p.F260Y 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 11 59131945 59131945 G A OR5AN1 Missense_Mutation p.G5E 0.25 tolerated(0.83) benign(0.002) TCGA-FW-A3R5-06 11 59132522 59132522 G A OR5AN1 Silent p.Q197Q 0.33 TCGA-FW-A3R5-06 11 59189495 59189495 C T OR5A2 Missense_Mutation p.G311E 0.30 tolerated(0.36) benign(0.013) TCGA-FW-A3R5-06 11 59189838 59189838 C T OR5A2 Missense_Mutation p.E197K 0.43 tolerated(0.1) benign(0.003) TCGA-FW-A3R5-06 11 59190271 59190271 C T OR5A2 Missense_Mutation p.M52I 0.12 tolerated(0.34) benign(0.001) TCGA-FW-A3R5-06 11 59210841 59210841 G A OR5A1 Missense_Mutation p.S67N 0.28 tolerated(0.06) benign(0.342) TCGA-FW-A3R5-06 11 59211041 59211041 C T OR5A1 Missense_Mutation p.L134F 0.21 deleterious(0.02) benign(0.167) TCGA-FW-A3R5-06 11 59211264 59211264 C T OR5A1 Missense_Mutation p.T208I 0.24 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 11 59224523 59224523 C T OR4D6 Silent p.V30V 0.25 TCGA-FW-A3R5-06 11 59245655 59245655 C T OR4D10 Silent p.F251F 0.29 TCGA-FW-A3R5-06 11 59271300 59271300 C T OR4D11 Silent p.D84D 0.27 TCGA-FW-A3R5-06 11 59271747 59271747 G A OR4D11 Silent p.R233R 0.32 TCGA-FW-A3R5-06 11 59271775 59271775 C T OR4D11 Missense_Mutation p.H243Y 0.27 deleterious(0.02) possibly_damaging(0.734) TCGA-FW-A3R5-06 11 59282416 59282416 G A OR4D9 Missense_Mutation p.E11K 0.28 deleterious(0.03) benign(0.077) TCGA-FW-A3R5-06 11 59282609 59282609 C T OR4D9 Missense_Mutation p.S75F 0.08 deleterious(0.04) benign(0.078) TCGA-FW-A3R5-06 11 59283076 59283076 G A OR4D9 Missense_Mutation p.E231K 0.09 tolerated(0.06) benign(0.17) TCGA-FW-A3R5-06 11 59406585 59406585 G A PATL1 Silent p.L743L 0.22 TCGA-FW-A3R5-06 11 59423479 59423479 G A PATL1 Missense_Mutation p.P255S 0.21 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 11 59480873 59480873 G A OR10V1 Missense_Mutation p.S149F 0.33 deleterious(0.02) probably_damaging(0.948) TCGA-FW-A3R5-06 11 59610056 59610056 C T GIF Missense_Mutation p.S124N 0.32 tolerated(0.15) benign(0.003) TCGA-FW-A3R5-06 11 59612937 59612937 C T GIF 5'UTR 0.25 TCGA-FW-A3R5-06 11 59630139 59630139 G A TCN1 Missense_Mutation p.R106C 0.24 tolerated(0.13) benign(0.006) TCGA-FW-A3R5-06 11 59814632 59814632 G A OOSP2 3'UTR 0.31 TCGA-FW-A3R5-06 11 59828646 59828646 G A MS4A3 Missense_Mutation p.E5K 0.28 tolerated(0.15) benign(0.063) TCGA-FW-A3R5-06 11 59829943 59829943 C T MS4A3 Silent p.A53A 0.29 TCGA-FW-A3R5-06 11 59830030 59830030 C T MS4A3 Silent p.F82F 0.32 TCGA-FW-A3R5-06 11 59857212 59857212 C T MS4A2 Missense_Mutation p.S35L 0.31 tolerated(0.37) possibly_damaging(0.587) TCGA-FW-A3R5-06 11 59940507 59940507 G A MS4A6A Silent p.F243F 0.15 TCGA-FW-A3R5-06 11 59949119 59949119 C T MS4A6A Missense_Mutation p.E56K 0.29 tolerated(0.99) benign(0.004) TCGA-FW-A3R5-06 11 60105304 60105304 C T MS4A6E Missense_Mutation p.P80S 0.21 tolerated(0.39) possibly_damaging(0.904) TCGA-FW-A3R5-06 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.35 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 60105379 60105379 C T MS4A6E Missense_Mutation p.P105S 0.24 tolerated(0.42) benign(0.022) TCGA-FW-A3R5-06 11 60164109 60164109 G A MS4A14 Missense_Mutation p.E20K 0.25 deleterious(0.01) possibly_damaging(0.487) TCGA-FW-A3R5-06 11 60183867 60183867 G A MS4A14 Missense_Mutation p.E509K 0.10 tolerated(0.24) benign(0.007) TCGA-FW-A3R5-06 11 60184221 60184221 G A MS4A14 Missense_Mutation p.E627K 0.30 tolerated(0.36) benign(0.004) TCGA-FW-A3R5-06 11 6023314 6023314 C T OR56A4 Silent p.K355K 0.35 TCGA-FW-A3R5-06 11 6023414 6023414 C T OR56A4 Missense_Mutation p.R322K 0.23 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 11 6048030 6048030 C T OR56A1 Missense_Mutation p.R302Q 0.09 deleterious(0.02) benign(0.002) TCGA-FW-A3R5-06 11 6048319 6048319 G A OR56A1 Nonsense_Mutation p.Q206* 0.23 TCGA-FW-A3R5-06 11 6048773 6048773 G A OR56A1 Silent p.I54I 0.33 TCGA-FW-A3R5-06 11 60557857 60557857 C T MS4A10 Missense_Mutation p.P17S 0.24 tolerated(0.17) benign(0.014) TCGA-FW-A3R5-06 11 60557969 60557969 G A MS4A10 Missense_Mutation p.S54N 0.27 tolerated(0.2) benign(0.017) TCGA-FW-A3R5-06 11 60635212 60635212 C T ZP1 Missense_Mutation p.L60F 0.46 deleterious(0) benign(0.105) TCGA-FW-A3R5-06 11 60637186 60637186 C T ZP1 Silent p.L165L 0.30 TCGA-FW-A3R5-06 11 60643116 60643116 G A ZP1 Missense_Mutation p.S635N 0.27 tolerated_low_confidence(0.33) benign(0) TCGA-FW-A3R5-06 11 60689298 60689298 C T TMEM109 Silent p.F131F 0.33 TCGA-FW-A3R5-06 11 60695126 60695126 G A TMEM132A Missense_Mutation p.R110Q 0.31 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 11 60696259 60696259 C T TMEM132A Silent p.A231A 0.35 TCGA-FW-A3R5-06 11 60696263 60696263 C T TMEM132A Missense_Mutation p.P233S 0.33 tolerated(0.52) benign(0.275) TCGA-FW-A3R5-06 11 60696318 60696318 C T TMEM132A Missense_Mutation p.P251L 0.09 tolerated(0.12) benign(0.108) TCGA-FW-A3R5-06 11 60699279 60699279 G A TMEM132A Missense_Mutation p.E380K 0.32 deleterious(0.01) benign(0.341) TCGA-FW-A3R5-06 11 60702830 60702830 C T TMEM132A Missense_Mutation p.S649L 0.21 deleterious(0) possibly_damaging(0.852) TCGA-FW-A3R5-06 11 60703555 60703555 C T TMEM132A Missense_Mutation p.R751W 0.14 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 11 60708742 60708742 G A SLC15A3 Silent p.L376L 0.32 TCGA-FW-A3R5-06 11 60711204 60711204 G A SLC15A3 Missense_Mutation p.P318L 0.23 tolerated(0.05) probably_damaging(1) TCGA-FW-A3R5-06 11 60711215 60711215 C T SLC15A3 Silent p.V314V 0.26 TCGA-FW-A3R5-06 11 60785320 60785320 C T CD6 Missense_Mutation p.P558S 0.28 tolerated(0.11) benign(0.15) TCGA-FW-A3R5-06 11 60785797 60785797 C T CD6 Missense_Mutation p.S625F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 60785798 60785798 C T CD6 Silent p.S625S 0.26 TCGA-FW-A3R5-06 11 60886927 60886927 G A CD5 Missense_Mutation p.E229K 0.24 tolerated(0.83) benign(0.002) TCGA-FW-A3R5-06 11 609451 609451 C T PHRF1 Missense_Mutation p.S1331L 0.19 tolerated(0.41) benign(0.008) TCGA-FW-A3R5-06 11 60970992 60970992 C T PGA3 5'UTR 0.33 TCGA-FW-A3R5-06 11 61015963 61015963 G A PGA5 Nonsense_Mutation p.W243* 0.27 TCGA-FW-A3R5-06 11 61018860 61018860 C T PGA5 3'UTR 0.28 TCGA-FW-A3R5-06 11 61034973 61034973 G A VWCE Silent p.F642F 0.22 TCGA-FW-A3R5-06 11 61053825 61053825 G A VWCE Missense_Mutation p.P168S 0.35 deleterious(0.04) possibly_damaging(0.562) TCGA-FW-A3R5-06 11 61106811 61106811 C T DAK Silent p.I130I 0.10 TCGA-FW-A3R5-06 11 61213508 61213508 C T SDHAF2 Missense_Mutation p.P156S 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 61249308 61249308 C T PPP1R32 Silent p.V9V 0.14 TCGA-FW-A3R5-06 11 61257301 61257301 G A PPP1R32 Missense_Mutation p.R364Q 0.31 tolerated(0.05) probably_damaging(0.99) TCGA-FW-A3R5-06 11 61290624 61290624 C T SYT7 Missense_Mutation p.E419K 0.23 deleterious(0) possibly_damaging(0.686) TCGA-FW-A3R5-06 11 6129180 6129180 G A OR56B4 Missense_Mutation p.E58K 0.34 deleterious(0.01) benign(0.344) TCGA-FW-A3R5-06 11 61291930 61291930 C T SYT7 Missense_Mutation p.D308N 0.21 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 11 61291963 61291963 G A SYT7 Nonsense_Mutation p.Q297* 0.09 TCGA-FW-A3R5-06 11 61511339 61511339 C T DAGLA Missense_Mutation p.S836L 0.28 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FW-A3R5-06 11 61533562 61533562 C T MYRF Silent p.P89P 0.18 TCGA-FW-A3R5-06 11 61533565 61533565 C T MYRF Silent p.L90L 0.29 TCGA-FW-A3R5-06 11 61533631 61533631 G A MYRF Silent p.K112K 0.29 TCGA-FW-A3R5-06 11 61596039 61596039 C T FADS2 Silent p.V59V 0.30 TCGA-FW-A3R5-06 11 61633172 61633172 C T FADS2 3'UTR 0.26 TCGA-FW-A3R5-06 11 61669974 61669974 G A RAB3IL1 Silent p.H313H 0.36 TCGA-FW-A3R5-06 11 61672252 61672252 G A RAB3IL1 Missense_Mutation p.P254S 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 11 618098 618098 C T CDHR5 Silent p.S658S 0.09 TCGA-FW-A3R5-06 11 6191187 6191187 G A OR52B2 Missense_Mutation p.R124C 0.31 deleterious(0.01) benign(0.027) TCGA-FW-A3R5-06 11 6191299 6191299 G A OR52B2 Silent p.I86I 0.28 TCGA-FW-A3R5-06 11 61960939 61960939 C T SCGB1D1 3'UTR 0.36 TCGA-FW-A3R5-06 11 61981320 61981320 C T SCGB2A1 3'UTR 0.20 TCGA-FW-A3R5-06 11 62065000 62065000 C T SCGB1D4 Silent p.V62V 0.27 TCGA-FW-A3R5-06 11 62123837 62123837 G A ASRGL1 Missense_Mutation p.M77I 0.26 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 11 62286062 62286062 G A AHNAK Missense_Mutation p.P5276L 0.22 benign(0.043) TCGA-FW-A3R5-06 11 62286063 62286063 G A AHNAK Missense_Mutation p.P5276S 0.21 benign(0.126) TCGA-FW-A3R5-06 11 62288674 62288674 G A AHNAK Silent p.V4405V 0.30 TCGA-FW-A3R5-06 11 62288742 62288742 G A AHNAK Missense_Mutation p.P4383S 0.27 probably_damaging(0.999) TCGA-FW-A3R5-06 11 62293078 62293078 A G AHNAK Silent p.V2937V 0.33 TCGA-FW-A3R5-06 11 62298879 62298879 G A AHNAK Missense_Mutation p.P1004S 0.26 probably_damaging(0.999) TCGA-FW-A3R5-06 11 62299256 62299256 G A AHNAK Missense_Mutation p.P878L 0.28 probably_damaging(1) TCGA-FW-A3R5-06 11 6231270 6231270 G A C11orf42 Missense_Mutation p.G88E 0.33 tolerated(1) benign(0.283) TCGA-FW-A3R5-06 11 6231278 6231278 G A C11orf42 Missense_Mutation p.G91S 0.29 tolerated(0.37) benign(0.059) TCGA-FW-A3R5-06 11 62359062 62359062 G A TUT1 Missense_Mutation p.P4S 0.36 deleterious_low_confidence(0) benign(0.032) TCGA-FW-A3R5-06 11 62372641 62372641 G A EML3 Silent p.L642L 0.34 TCGA-FW-A3R5-06 11 62373637 62373637 G A EML3 Silent p.F518F 0.34 TCGA-FW-A3R5-06 11 62376529 62376529 G A EML3 Silent p.A278A 0.27 TCGA-FW-A3R5-06 11 6238577 6238577 G A FAM160A2 Intron 0.40 TCGA-FW-A3R5-06 11 62398280 62398280 G A GANAB Silent p.S415S 0.23 TCGA-FW-A3R5-06 11 62398281 62398281 G A GANAB Missense_Mutation p.S415F 0.24 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 11 62398592 62398592 G A GANAB Missense_Mutation p.R376C 0.21 deleterious(0.05) probably_damaging(0.944) TCGA-FW-A3R5-06 11 62415387 62415387 G A INTS5 Missense_Mutation p.S722F 0.12 deleterious(0.03) benign(0.081) TCGA-FW-A3R5-06 11 62417456 62417456 G A RP11-831H9.11 Missense_Mutation p.P93L 0.22 deleterious_low_confidence(0.01) benign(0) TCGA-FW-A3R5-06 11 6245348 6245348 G A FAM160A2 Missense_Mutation p.P90L 0.29 tolerated(0.26) benign(0.033) TCGA-FW-A3R5-06 11 62502996 62502996 C T TTC9C Silent p.A127A 0.28 TCGA-FW-A3R5-06 11 62572876 62572876 G A NXF1 5'UTR 0.20 TCGA-FW-A3R5-06 11 62574950 62574950 G A STX5 Silent p.F353F 0.14 TCGA-FW-A3R5-06 11 6260441 6260441 G A CNGA4 Missense_Mutation p.S2N 0.30 tolerated_low_confidence(0.09) benign(0.001) TCGA-FW-A3R5-06 11 6262747 6262747 C T CNGA4 Missense_Mutation p.A335V 0.31 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 11 6262879 6262879 G A CNGA4 Missense_Mutation p.G379E 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 62655996 62655996 C T SLC3A2 Missense_Mutation p.S576L 0.28 tolerated(0.16) benign(0.004) TCGA-FW-A3R5-06 11 62677322 62677322 G A CHRM1 Silent p.C417C 0.21 TCGA-FW-A3R5-06 11 62677518 62677518 C T CHRM1 Missense_Mutation p.R352Q 0.25 deleterious(0.04) benign(0.114) TCGA-FW-A3R5-06 11 62677545 62677545 G A CHRM1 Missense_Mutation p.P343L 0.25 tolerated(0.15) benign(0.004) TCGA-FW-A3R5-06 11 62678637 62678637 G A CHRM1 5'UTR 0.33 TCGA-FW-A3R5-06 11 62678638 62678638 G A CHRM1 5'UTR 0.33 TCGA-FW-A3R5-06 11 62744636 62744636 C T SLC22A6 Missense_Mutation p.E529K 0.10 tolerated(0.55) benign(0.005) TCGA-FW-A3R5-06 11 62748477 62748477 G A SLC22A6 Silent p.F339F 0.27 TCGA-FW-A3R5-06 11 62751905 62751905 C T SLC22A6 Nonsense_Mutation p.W86* 0.14 TCGA-FW-A3R5-06 11 62760693 62760693 G A SLC22A8 3'UTR 0.31 TCGA-FW-A3R5-06 11 62760833 62760833 G A SLC22A8 Intron 0.27 TCGA-FW-A3R5-06 11 62760970 62760970 C T SLC22A8 Silent p.G485G 0.10 TCGA-FW-A3R5-06 11 62763514 62763514 C T SLC22A8 Missense_Mutation p.R291K 0.07 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 11 62763577 62763577 G A SLC22A8 Missense_Mutation p.S270L 0.26 deleterious(0.02) benign(0.09) TCGA-FW-A3R5-06 11 62768205 62768205 C T SLC22A8 Missense_Mutation p.D142N 0.29 tolerated(0.41) benign(0.01) TCGA-FW-A3R5-06 11 62782276 62782276 G A SLC22A8 Missense_Mutation p.P52L 0.37 tolerated(0.05) possibly_damaging(0.662) TCGA-FW-A3R5-06 11 6290997 6290997 C T CCKBR Missense_Mutation p.R84C 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 6291949 6291949 C T CCKBR Missense_Mutation p.R243C 0.36 tolerated(0.06) probably_damaging(0.985) TCGA-FW-A3R5-06 11 6292196 6292196 G - CCKBR Intron 0.08 TCGA-FW-A3R5-06 11 62933664 62933664 G A SLC22A25 Silent p.F379F 0.28 TCGA-FW-A3R5-06 11 62995958 62995958 T G SLC22A25 Missense_Mutation p.N161H 0.28 deleterious(0.02) benign(0.381) TCGA-FW-A3R5-06 11 62995971 62995971 C T SLC22A25 Missense_Mutation p.M156I 0.16 tolerated(0.5) benign(0.01) TCGA-FW-A3R5-06 11 62996844 62996844 G A SLC22A25 Missense_Mutation p.P94L 0.14 deleterious(0.02) benign(0.216) TCGA-FW-A3R5-06 11 63057714 63057714 C T SLC22A10 Missense_Mutation p.P26L 0.33 tolerated(0.27) benign(0) TCGA-FW-A3R5-06 11 63057770 63057770 C T SLC22A10 Missense_Mutation p.P45S 0.32 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 11 63057917 63057917 C T SLC22A10 Missense_Mutation p.P94S 0.33 deleterious(0.02) benign(0.391) TCGA-FW-A3R5-06 11 63059013 63059013 G A SLC22A10 Nonsense_Mutation p.W135* 0.26 TCGA-FW-A3R5-06 11 63059015 63059015 G A SLC22A10 Missense_Mutation p.D136N 0.25 tolerated(0.1) possibly_damaging(0.572) TCGA-FW-A3R5-06 11 63064844 63064844 C T SLC22A10 Silent p.F192F 0.18 TCGA-FW-A3R5-06 11 63078567 63078567 G A SLC22A10 3'UTR 0.27 TCGA-FW-A3R5-06 11 63129901 63129901 G A SLC22A10 3'UTR 0.31 TCGA-FW-A3R5-06 11 63137657 63137657 C T SLC22A9 Silent p.F43F 0.31 TCGA-FW-A3R5-06 11 63141473 63141473 G A SLC22A9 Missense_Mutation p.D257N 0.17 tolerated(0.35) benign(0.123) TCGA-FW-A3R5-06 11 63141520 63141520 C T SLC22A9 Silent p.I272I 0.21 TCGA-FW-A3R5-06 11 63149660 63149660 G A SLC22A9 Silent p.L328L 0.31 TCGA-FW-A3R5-06 11 63149732 63149732 C T SLC22A9 Silent p.S352S 0.27 TCGA-FW-A3R5-06 11 63149733 63149733 C T SLC22A9 Missense_Mutation p.L353F 0.26 tolerated(0.17) benign(0.16) TCGA-FW-A3R5-06 11 63174098 63174098 G A SLC22A9 Silent p.L401L 0.09 TCGA-FW-A3R5-06 11 63177345 63177345 G A SLC22A9 3'UTR 0.29 TCGA-FW-A3R5-06 11 63230914 63230914 G A HRASLS5 3'UTR 0.26 TCGA-FW-A3R5-06 11 63230915 63230915 G A HRASLS5 3'UTR 0.26 TCGA-FW-A3R5-06 11 63230951 63230951 C T HRASLS5 3'UTR 0.23 TCGA-FW-A3R5-06 11 63235883 63235883 C T HRASLS5 Missense_Mutation p.E144K 0.29 deleterious(0.03) probably_damaging(0.969) TCGA-FW-A3R5-06 11 63276393 63276393 G A LGALS12 Nonsense_Mutation p.W124* 0.21 TCGA-FW-A3R5-06 11 63276414 63276414 G A LGALS12 Missense_Mutation p.R131K 0.24 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 11 63277357 63277357 C T LGALS12 Silent p.F183F 0.16 TCGA-FW-A3R5-06 11 63283879 63283879 G A LGALS12 3'UTR 0.24 TCGA-FW-A3R5-06 11 63313703 63313703 G A RARRES3 Missense_Mutation p.R157K 0.29 tolerated(0.5) benign(0.001) TCGA-FW-A3R5-06 11 63320447 63320447 C T HRASLS2 Missense_Mutation p.E160K 0.18 tolerated(0.2) benign(0.192) TCGA-FW-A3R5-06 11 63325900 63325900 C T HRASLS2 Silent p.V117V 0.26 TCGA-FW-A3R5-06 11 63487353 63487353 C T RTN3 Missense_Mutation p.S460F 0.30 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 11 63517538 63517538 C T RTN3 Missense_Mutation p.S869F 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 63517664 63517664 C T RTN3 Missense_Mutation p.P911L 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 63656421 63656421 C T MARK2 Intron 0.21 TCGA-FW-A3R5-06 11 63668267 63668267 C T MARK2 Nonsense_Mutation p.R302* 0.08 TCGA-FW-A3R5-06 11 63676695 63676695 G A MARK2 Missense_Mutation p.E785K 0.28 deleterious(0) possibly_damaging(0.826) TCGA-FW-A3R5-06 11 63883877 63883877 G A FLRT1 Silent p.T46T 0.20 TCGA-FW-A3R5-06 11 63883878 63883878 G A FLRT1 Missense_Mutation p.E47K 0.23 tolerated(0.5) benign(0.013) TCGA-FW-A3R5-06 11 63883944 63883944 G A FLRT1 Missense_Mutation p.D69N 0.35 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 64010707 64010707 C T FKBP2 Silent p.L70L 0.10 TCGA-FW-A3R5-06 11 64010708 64010708 T C FKBP2 Missense_Mutation p.L70P 0.10 tolerated(0.07) possibly_damaging(0.808) TCGA-FW-A3R5-06 11 64026164 64026164 C T PLCB3 Missense_Mutation p.S411F 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 64053969 64053969 C T GPR137 Intron 0.42 TCGA-FW-A3R5-06 11 64053971 64053971 C T GPR137 Intron 0.41 TCGA-FW-A3R5-06 11 64055334 64055334 C T GPR137 Silent p.F241F 0.30 TCGA-FW-A3R5-06 11 64056670 64056670 C T GPR137 Missense_Mutation p.P421S 0.26 tolerated_low_confidence(0.11) benign(0.047) TCGA-FW-A3R5-06 11 64056769 64056769 C T GPR137 Missense_Mutation p.R454C 0.29 deleterious_low_confidence(0.02) benign(0) TCGA-FW-A3R5-06 11 64074765 64074765 C T ESRRA Silent p.A38A 0.29 TCGA-FW-A3R5-06 11 64085596 64085596 C T PRDX5 5'UTR 0.67 TCGA-FW-A3R5-06 11 64111644 64111644 C T CCDC88B Missense_Mutation p.S544L 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 11 64111715 64111715 G A CCDC88B Missense_Mutation p.D568N 0.39 tolerated_low_confidence(0.34) benign(0.081) TCGA-FW-A3R5-06 11 64116835 64116835 G A CCDC88B Silent p.E883E 0.29 TCGA-FW-A3R5-06 11 6415891 6415891 C G SMPD1 3'UTR 0.35 TCGA-FW-A3R5-06 11 6415893 6415893 C T SMPD1 3'UTR 0.35 TCGA-FW-A3R5-06 11 6432347 6432347 G A APBB1 Silent p.L77L 0.27 TCGA-FW-A3R5-06 11 64331852 64331852 G A SLC22A11 Silent p.K298K 0.29 TCGA-FW-A3R5-06 11 64335111 64335111 C T SLC22A11 Silent p.L367L 0.32 TCGA-FW-A3R5-06 11 64368270 64368270 C T SLC22A12 Silent p.V486V 0.31 TCGA-FW-A3R5-06 11 64390363 64390363 G A NRXN2 Silent p.S1345S 0.38 TCGA-FW-A3R5-06 11 64397937 64397937 G A NRXN2 Nonsense_Mutation p.R1232* 0.23 TCGA-FW-A3R5-06 11 64417930 64417930 G A NRXN2 Silent p.L1033L 0.20 TCGA-FW-A3R5-06 11 64418966 64418966 C T NRXN2 Missense_Mutation p.M893I 0.25 tolerated(1) possibly_damaging(0.535) TCGA-FW-A3R5-06 11 64427844 64427844 C T NRXN2 Silent p.L783L 0.12 TCGA-FW-A3R5-06 11 64428396 64428396 C T NRXN2 Missense_Mutation p.G672S 0.40 tolerated(0.55) benign(0.001) TCGA-FW-A3R5-06 11 64504407 64504407 C T RASGRP2 Missense_Mutation p.G305S 0.26 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 11 64504414 64504414 C T RASGRP2 Silent p.P302P 0.18 TCGA-FW-A3R5-06 11 64507629 64507629 G A RASGRP2 Silent p.T126T 0.31 TCGA-FW-A3R5-06 11 64514191 64514191 C T PYGM Silent p.R823R 0.23 TCGA-FW-A3R5-06 11 64517912 64517912 C T PYGM Missense_Mutation p.G705R 0.06 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 64535070 64535070 G A SF1 Missense_Mutation p.P564S 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-FW-A3R5-06 11 64535205 64535205 G A SF1 Missense_Mutation p.P519S 0.35 tolerated_low_confidence(0.16) possibly_damaging(0.803) TCGA-FW-A3R5-06 11 64591999 64591999 G A CDC42BPG Silent p.V1534V 0.12 TCGA-FW-A3R5-06 11 64594815 64594815 G A CDC42BPG Silent p.F1402F 0.18 TCGA-FW-A3R5-06 11 64603064 64603064 C T CDC42BPG Silent p.G596G 0.18 TCGA-FW-A3R5-06 11 64607671 64607671 G A CDC42BPG Missense_Mutation p.P168S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 64622825 64622825 G A EHD1 Missense_Mutation p.P350L 0.29 tolerated(0.16) benign(0.005) TCGA-FW-A3R5-06 11 64627777 64627777 G A EHD1 Silent p.F178F 0.34 TCGA-FW-A3R5-06 11 64662882 64662882 G A ATG2A Silent p.S1820S 0.31 TCGA-FW-A3R5-06 11 64664000 64664000 G A ATG2A Silent p.A1787A 0.30 TCGA-FW-A3R5-06 11 64669638 64669638 G A ATG2A Silent p.L1305L 0.31 TCGA-FW-A3R5-06 11 64675261 64675261 G A ATG2A Silent p.I822I 0.21 TCGA-FW-A3R5-06 11 64698931 64698931 C T PPP2R5B Silent p.F305F 0.34 TCGA-FW-A3R5-06 11 64756878 64756878 G A BATF2 Missense_Mutation p.S183F 0.28 deleterious(0) benign(0.024) TCGA-FW-A3R5-06 11 6477676 6477676 G A TRIM3 Missense_Mutation p.S427F 0.37 deleterious(0) possibly_damaging(0.878) TCGA-FW-A3R5-06 11 6477836 6477836 G A TRIM3 Missense_Mutation p.L374F 0.24 tolerated(0.62) benign(0.368) TCGA-FW-A3R5-06 11 64803081 64803081 C T SNX15 Nonsense_Mutation p.R204* 0.26 TCGA-FW-A3R5-06 11 64815823 64815823 C T NAALADL1 Silent p.A411A 0.10 TCGA-FW-A3R5-06 11 64821816 64821816 C T NAALADL1 Missense_Mutation p.G300R 0.25 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 11 64824920 64824920 C T NAALADL1 Missense_Mutation p.E176K 0.31 tolerated(0.52) benign(0.005) TCGA-FW-A3R5-06 11 64825409 64825409 C T NAALADL1 Missense_Mutation p.E140K 0.30 tolerated(0.14) benign(0.197) TCGA-FW-A3R5-06 11 64825982 64825982 C T NAALADL1 Silent p.T4T 0.30 TCGA-FW-A3R5-06 11 64876153 64876153 C T VPS51 Missense_Mutation p.R404C 0.50 deleterious(0.04) possibly_damaging(0.551) TCGA-FW-A3R5-06 11 64876880 64876880 C T VPS51 Silent p.L524L 0.11 TCGA-FW-A3R5-06 11 64882811 64882811 G A TM7SF2 Silent p.G306G 0.29 TCGA-FW-A3R5-06 11 64883614 64883614 G A TM7SF2 3'UTR 0.40 TCGA-FW-A3R5-06 11 64893018 64893018 C T MRPL49 Silent p.V96V 0.23 TCGA-FW-A3R5-06 11 64899785 64899785 G A SYVN1 Silent p.F155F 0.29 TCGA-FW-A3R5-06 11 64981483 64981483 C T CAPN1 3'Flank 0.26 TCGA-FW-A3R5-06 11 65000786 65000786 C T SLC22A20 RNA 0.11 TCGA-FW-A3R5-06 11 65088288 65088288 C T CDC42EP2 5'UTR 0.36 TCGA-FW-A3R5-06 11 65107856 65107856 C T DPF2 Silent p.L11L 0.17 TCGA-FW-A3R5-06 11 65113244 65113244 C T DPF2 Missense_Mutation p.P249S 0.31 tolerated(0.2) benign(0.008) TCGA-FW-A3R5-06 11 65124002 65124002 C T TIGD3 Silent p.I241I 0.21 TCGA-FW-A3R5-06 11 65272664 65272664 C T MALAT1 RNA 0.32 TCGA-FW-A3R5-06 11 65293661 65293661 T C SCYL1 Missense_Mutation p.F148L 0.30 tolerated(0.06) possibly_damaging(0.734) TCGA-FW-A3R5-06 11 65319621 65319621 G A LTBP3 Silent p.F451F 0.26 TCGA-FW-A3R5-06 11 6532654 6532654 C T DNHD1 Nonsense_Mutation p.R463* 0.32 TCGA-FW-A3R5-06 11 65373509 65373509 G A MAP3K11 Silent p.P549P 0.27 TCGA-FW-A3R5-06 11 65396365 65396365 C T PCNXL3 Missense_Mutation p.A1296V 0.29 tolerated(0.44) probably_damaging(0.954) TCGA-FW-A3R5-06 11 65396366 65396366 C T PCNXL3 Silent p.A1296A 0.29 TCGA-FW-A3R5-06 11 65413779 65413779 C T SIPA1 Missense_Mutation p.R451C 0.28 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 11 65417935 65417935 G A SIPA1 Silent p.Q989Q 0.22 TCGA-FW-A3R5-06 11 65423223 65423223 G A RELA Silent p.D323D 0.29 TCGA-FW-A3R5-06 11 65545600 65545600 G A AP5B1 Silent p.S788S 0.30 TCGA-FW-A3R5-06 11 65562597 65562597 C T OVOL1 Missense_Mutation p.H197Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 11 65632592 65632592 C T MUS81 Silent p.F459F 0.31 TCGA-FW-A3R5-06 11 65714447 65714447 G A TSGA10IP RNA 0.28 TCGA-FW-A3R5-06 11 65715015 65715015 G A TSGA10IP RNA 0.26 TCGA-FW-A3R5-06 11 65788286 65788286 G A CATSPER1 Silent p.A641A 0.20 TCGA-FW-A3R5-06 11 65789011 65789011 C T CATSPER1 Silent p.K549K 0.19 TCGA-FW-A3R5-06 11 65789247 65789247 C T CATSPER1 Nonsense_Mutation p.W511* 0.15 TCGA-FW-A3R5-06 11 65789296 65789296 G A CATSPER1 Missense_Mutation p.A495V 0.11 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 11 65793010 65793010 C T CATSPER1 Missense_Mutation p.D281N 0.21 tolerated(0.37) benign(0.001) TCGA-FW-A3R5-06 11 65810712 65810712 C T GAL3ST3 Missense_Mutation p.E188K 0.22 tolerated(0.29) benign(0.06) TCGA-FW-A3R5-06 11 65810761 65810761 G A GAL3ST3 Silent p.A171A 0.18 TCGA-FW-A3R5-06 11 65810929 65810929 G A GAL3ST3 Silent p.F115F 0.11 TCGA-FW-A3R5-06 11 65810959 65810959 G A GAL3ST3 Silent p.F105F 0.29 TCGA-FW-A3R5-06 11 65811104 65811104 G A GAL3ST3 Missense_Mutation p.S57L 0.27 tolerated(0.05) possibly_damaging(0.469) TCGA-FW-A3R5-06 11 65829159 65829159 G A SF3B2 Silent p.G594G 0.26 TCGA-FW-A3R5-06 11 66026257 66026257 C T KLC2 Silent p.S64S 0.24 TCGA-FW-A3R5-06 11 66062685 66062685 C T TMEM151A Missense_Mutation p.S323L 0.28 tolerated(0.64) benign(0.169) TCGA-FW-A3R5-06 11 66063186 66063186 G A TMEM151A 3'UTR 0.56 TCGA-FW-A3R5-06 11 66082657 66082657 G A CD248 Silent p.P614P 0.40 TCGA-FW-A3R5-06 11 66083207 66083207 G A CD248 Missense_Mutation p.P431L 0.39 deleterious(0) benign(0.439) TCGA-FW-A3R5-06 11 66083828 66083828 G A CD248 Missense_Mutation p.S224L 0.21 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 66084128 66084128 C T CD248 Missense_Mutation p.G124D 0.29 tolerated(0.25) probably_damaging(0.935) TCGA-FW-A3R5-06 11 66136562 66136562 G A SLC29A2 Silent p.S128S 0.38 TCGA-FW-A3R5-06 11 66189691 66189691 G A NPAS4 Silent p.G92G 0.26 TCGA-FW-A3R5-06 11 66190265 66190265 G A NPAS4 Missense_Mutation p.G184E 0.29 tolerated(0.07) possibly_damaging(0.635) TCGA-FW-A3R5-06 11 66190294 66190294 C T NPAS4 Missense_Mutation p.P194S 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 66191487 66191487 C T NPAS4 Missense_Mutation p.P376S 0.29 tolerated(0.57) benign(0) TCGA-FW-A3R5-06 11 66191710 66191710 C T NPAS4 Missense_Mutation p.T450I 0.30 deleterious_low_confidence(0.01) benign(0) TCGA-FW-A3R5-06 11 66192132 66192132 C T NPAS4 Silent p.L591L 0.20 TCGA-FW-A3R5-06 11 66192507 66192507 G A NPAS4 Missense_Mutation p.D716N 0.38 deleterious(0.02) possibly_damaging(0.479) TCGA-FW-A3R5-06 11 6624662 6624662 G A RRP8 Missense_Mutation p.P24L 0.25 deleterious_low_confidence(0.05) benign(0.003) TCGA-FW-A3R5-06 11 66254783 66254783 C T DPP3 Silent p.A181A 0.25 TCGA-FW-A3R5-06 11 66258726 66258726 C T DPP3 Missense_Mutation p.P224S 0.08 tolerated(0.51) benign(0.008) TCGA-FW-A3R5-06 11 66259201 66259201 C T DPP3 Missense_Mutation p.P321L 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 66322807 66322807 C T CTD-3074O7.2 3'Flank 0.18 TCGA-FW-A3R5-06 11 66358116 66358116 C G CCDC87 Missense_Mutation p.E791Q 0.29 tolerated(0.1) possibly_damaging(0.624) TCGA-FW-A3R5-06 11 6635912 6635912 G A TPP1 Silent p.T519T 0.22 TCGA-FW-A3R5-06 11 66359505 66359505 G A CCDC87 Missense_Mutation p.P328S 0.15 tolerated(0.69) benign(0.017) TCGA-FW-A3R5-06 11 66359609 66359609 G A CCDC87 Missense_Mutation p.P293L 0.33 tolerated(0.08) possibly_damaging(0.808) TCGA-FW-A3R5-06 11 66359610 66359610 G A CCDC87 Missense_Mutation p.P293S 0.34 tolerated(0.32) possibly_damaging(0.672) TCGA-FW-A3R5-06 11 66392364 66392364 C T RBM14 Silent p.A339A 0.28 TCGA-FW-A3R5-06 11 6650760 6650760 G A DCHS1 Missense_Mutation p.S1695F 0.26 deleterious(0.01) benign(0.049) TCGA-FW-A3R5-06 11 6661841 6661841 C T DCHS1 Missense_Mutation p.R335Q 0.37 tolerated(0.23) benign(0.131) TCGA-FW-A3R5-06 11 66638892 66638892 G A PC Silent p.F127F 0.11 TCGA-FW-A3R5-06 11 66802194 66802194 G A SYT12 Missense_Mutation p.S38N 0.26 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 11 66811158 66811158 C T SYT12 Missense_Mutation p.P224L 0.29 deleterious(0.05) benign(0.309) TCGA-FW-A3R5-06 11 66811188 66811188 G A SYT12 Missense_Mutation p.S234N 0.32 deleterious(0.01) benign(0.42) TCGA-FW-A3R5-06 11 66816097 66816097 G A SYT12 Missense_Mutation p.G379S 0.38 tolerated(0.07) possibly_damaging(0.602) TCGA-FW-A3R5-06 11 66834233 66834233 G A RHOD Missense_Mutation p.R82Q 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 67017891 67017891 C T KDM2A Missense_Mutation p.S797L 0.27 tolerated(0.14) benign(0.11) TCGA-FW-A3R5-06 11 67022482 67022482 C T KDM2A Missense_Mutation p.L1149F 0.20 tolerated(0.06) probably_damaging(0.96) TCGA-FW-A3R5-06 11 67051805 67051805 C T ADRBK1 Missense_Mutation p.R539C 0.13 deleterious(0) possibly_damaging(0.745) TCGA-FW-A3R5-06 11 67133074 67133074 C T CLCF1 Missense_Mutation p.E71K 0.27 tolerated(0.08) possibly_damaging(0.778) TCGA-FW-A3R5-06 11 67161231 67161231 C T RAD9A Missense_Mutation p.S140L 0.30 tolerated(0.33) benign(0.002) TCGA-FW-A3R5-06 11 67166500 67166500 C T PPP1CA Missense_Mutation p.D231N 0.21 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-FW-A3R5-06 11 67174477 67174477 C T TBC1D10C Silent p.F276F 0.28 TCGA-FW-A3R5-06 11 67192079 67192079 G A CARNS1 3'UTR 0.42 TCGA-FW-A3R5-06 11 67201482 67201482 C T RPS6KB2 Missense_Mutation p.P308L 0.11 deleterious(0.02) possibly_damaging(0.609) TCGA-FW-A3R5-06 11 67219123 67219123 G A GPR152 Missense_Mutation p.P358L 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.521) TCGA-FW-A3R5-06 11 67219300 67219300 C T GPR152 Missense_Mutation p.S299N 0.12 tolerated(0.07) probably_damaging(0.997) TCGA-FW-A3R5-06 11 67219664 67219664 C T GPR152 Missense_Mutation p.D178N 0.36 tolerated(0.16) probably_damaging(1) TCGA-FW-A3R5-06 11 67219760 67219760 G A GPR152 Missense_Mutation p.R146C 0.29 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 11 67220115 67220115 G A GPR152 Silent p.P27P 0.10 TCGA-FW-A3R5-06 11 67222840 67222840 G A CABP4 5'UTR 0.25 TCGA-FW-A3R5-06 11 67288529 67288529 C T CABP2 Missense_Mutation p.E116K 0.33 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 11 67379625 67379625 C T NDUFV1 Silent p.F399F 0.33 TCGA-FW-A3R5-06 11 67399174 67399174 G A TBX10 Missense_Mutation p.R354W 0.15 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-FW-A3R5-06 11 67402484 67402484 G A TBX10 Silent p.I86I 0.30 TCGA-FW-A3R5-06 11 67410302 67410302 C T ACY3 Missense_Mutation p.E285K 0.39 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 11 67430791 67430791 G A ALDH3B2 Silent p.P351P 0.30 TCGA-FW-A3R5-06 11 67430797 67430797 G A ALDH3B2 Silent p.L349L 0.24 TCGA-FW-A3R5-06 11 67431935 67431935 C T ALDH3B2 Missense_Mutation p.E269K 0.33 deleterious(0.01) possibly_damaging(0.619) TCGA-FW-A3R5-06 11 67766748 67766748 G A UNC93B1 Silent p.S194S 0.37 TCGA-FW-A3R5-06 11 67815433 67815433 C T TCIRG1 Silent p.I516I 0.31 TCGA-FW-A3R5-06 11 6790008 6790008 G A OR2AG2 Missense_Mutation p.L61F 0.06 tolerated(1) benign(0.014) TCGA-FW-A3R5-06 11 67933496 67933496 G A SUV420H1 Intron 0.19 TCGA-FW-A3R5-06 11 68029081 68029081 G A C11orf24 3'UTR 0.37 TCGA-FW-A3R5-06 11 6806670 6806670 C T OR2AG1 Silent p.T134T 0.25 TCGA-FW-A3R5-06 11 68115441 68115441 C T LRP5 Missense_Mutation p.S73F 0.18 tolerated(0.07) benign(0.003) TCGA-FW-A3R5-06 11 68192613 68192613 G A LRP5 Missense_Mutation p.E1094K 0.16 tolerated(0.06) probably_damaging(0.992) TCGA-FW-A3R5-06 11 68343463 68343463 C T PPP6R3 Silent p.F499F 0.31 TCGA-FW-A3R5-06 11 68475624 68475624 C T MTL5 3'UTR 0.50 TCGA-FW-A3R5-06 11 68478463 68478463 C T MTL5 Missense_Mutation p.E405K 0.27 deleterious(0.02) probably_damaging(0.96) TCGA-FW-A3R5-06 11 68571514 68571514 G A CPT1A Missense_Mutation p.S170L 0.33 deleterious(0) benign(0.231) TCGA-FW-A3R5-06 11 68658759 68658759 G A MRPL21 3'UTR 0.27 TCGA-FW-A3R5-06 11 68664142 68664142 G A MRPL21 Silent p.V79V 0.20 TCGA-FW-A3R5-06 11 6866924 6866924 G A OR10A5 Missense_Mutation p.G4E 0.24 tolerated(0.32) benign(0.004) TCGA-FW-A3R5-06 11 6867339 6867339 G A OR10A5 Silent p.R142R 0.22 TCGA-FW-A3R5-06 11 6867615 6867615 G A OR10A5 Silent p.G234G 0.27 TCGA-FW-A3R5-06 11 68696733 68696733 C T IGHMBP2 Silent p.L381L 0.22 TCGA-FW-A3R5-06 11 68701305 68701305 C T IGHMBP2 Silent p.P487P 0.33 TCGA-FW-A3R5-06 11 68702871 68702871 C T IGHMBP2 Silent p.F579F 0.10 TCGA-FW-A3R5-06 11 68704332 68704332 C T IGHMBP2 Missense_Mutation p.P795L 0.32 tolerated(0.28) benign(0.003) TCGA-FW-A3R5-06 11 68707096 68707096 C T IGHMBP2 Missense_Mutation p.S960F 0.14 deleterious(0) possibly_damaging(0.463) TCGA-FW-A3R5-06 11 68747534 68747534 C T MRGPRD Missense_Mutation p.G308S 0.22 tolerated(0.22) benign(0.014) TCGA-FW-A3R5-06 11 68747555 68747555 G A MRGPRD Missense_Mutation p.R301C 0.35 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 11 68748123 68748123 C T MRGPRD Silent p.V111V 0.11 TCGA-FW-A3R5-06 11 68748346 68748346 G A MRGPRD Missense_Mutation p.T37I 0.35 tolerated(0.2) benign(0.01) TCGA-FW-A3R5-06 11 688045 688045 G A DEAF1 Missense_Mutation p.P177L 0.32 tolerated(0.07) possibly_damaging(0.776) TCGA-FW-A3R5-06 11 68835021 68835021 T C TPCN2 Silent p.P259P 0.28 TCGA-FW-A3R5-06 11 68839451 68839451 C T TPCN2 Silent p.L341L 0.22 TCGA-FW-A3R5-06 11 6891435 6891435 C T OR10A2 Silent p.L150L 0.28 TCGA-FW-A3R5-06 11 6898505 6898505 C T OR10A4 Silent p.L209L 0.33 TCGA-FW-A3R5-06 11 69063588 69063588 C T MYEOV Missense_Mutation p.S224L 0.40 tolerated_low_confidence(1) possibly_damaging(0.776) TCGA-FW-A3R5-06 11 6912853 6912853 C T OR2D2 Silent p.K293K 0.26 TCGA-FW-A3R5-06 11 6913201 6913201 G A OR2D2 Silent p.F177F 0.12 TCGA-FW-A3R5-06 11 6913368 6913368 G A OR2D2 Missense_Mutation p.R122C 0.60 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 11 6913431 6913431 G A OR2D2 Missense_Mutation p.L101F 0.24 deleterious(0.02) possibly_damaging(0.729) TCGA-FW-A3R5-06 11 69514115 69514115 G A FGF19 Missense_Mutation p.S189F 0.26 deleterious(0.01) possibly_damaging(0.778) TCGA-FW-A3R5-06 11 6953543 6953543 C T ZNF215 Nonsense_Mutation p.R14* 0.30 TCGA-FW-A3R5-06 11 69587967 69587967 T C FGF4 3'UTR 0.25 TCGA-FW-A3R5-06 11 69625426 69625426 C T FGF3 Missense_Mutation p.E123K 0.22 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 11 6964814 6964814 G A ZNF215 Silent p.L218L 0.32 TCGA-FW-A3R5-06 11 6977581 6977581 G A ZNF215 Missense_Mutation p.G458E 0.19 tolerated(0.07) benign(0.07) TCGA-FW-A3R5-06 11 69978115 69978115 C T ANO1 Silent p.A396A 0.40 TCGA-FW-A3R5-06 11 70007780 70007780 C T ANO1 Silent p.F611F 0.13 TCGA-FW-A3R5-06 11 70007795 70007795 G A ANO1 Silent p.V616V 0.23 TCGA-FW-A3R5-06 11 70017033 70017033 C T ANO1 Silent p.F746F 0.26 TCGA-FW-A3R5-06 11 70017060 70017060 G A ANO1 Silent p.L755L 0.17 TCGA-FW-A3R5-06 11 70031747 70031747 C T ANO1 Silent p.S880S 0.16 TCGA-FW-A3R5-06 11 70118404 70118404 C T PPFIA1 Silent p.S42S 0.16 TCGA-FW-A3R5-06 11 70189923 70189923 C T PPFIA1 Missense_Mutation p.P619L 0.13 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 11 7021048 7021048 G A ZNF214 3'UTR 0.26 TCGA-FW-A3R5-06 11 7022292 7022292 C T ZNF214 Missense_Mutation p.D208N 0.18 tolerated(0.26) benign(0.351) TCGA-FW-A3R5-06 11 70260694 70260694 C T CTTN Missense_Mutation p.S113L 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 11 70260710 70260710 C T CTTN Silent p.V118V 0.17 TCGA-FW-A3R5-06 11 70319451 70319451 C T SHANK2 Silent p.Q1692Q 0.16 TCGA-FW-A3R5-06 11 70331568 70331568 C T SHANK2 Silent p.E1611E 0.15 TCGA-FW-A3R5-06 11 70331606 70331606 G A SHANK2 Nonsense_Mutation p.Q1599* 0.24 TCGA-FW-A3R5-06 11 70331666 70331666 G A SHANK2 Missense_Mutation p.P1579S 0.41 tolerated(0.11) possibly_damaging(0.641) TCGA-FW-A3R5-06 11 70331697 70331697 G A SHANK2 Silent p.L1568L 0.26 TCGA-FW-A3R5-06 11 70331897 70331897 C T SHANK2 Missense_Mutation p.D1502N 0.62 deleterious(0) possibly_damaging(0.555) TCGA-FW-A3R5-06 11 70332205 70332205 G A SHANK2 Missense_Mutation p.S1399F 0.29 deleterious(0) possibly_damaging(0.485) TCGA-FW-A3R5-06 11 70332299 70332299 G A SHANK2 Missense_Mutation p.P1368S 0.38 deleterious(0.02) possibly_damaging(0.641) TCGA-FW-A3R5-06 11 70332700 70332700 C T SHANK2 Missense_Mutation p.G1234E 0.37 tolerated(0.29) probably_damaging(0.931) TCGA-FW-A3R5-06 11 70332825 70332825 C T SHANK2 Silent p.A1192A 0.22 TCGA-FW-A3R5-06 11 70332847 70332847 C T SHANK2 Missense_Mutation p.S1185N 0.28 tolerated(0.33) benign(0.005) TCGA-FW-A3R5-06 11 70332873 70332873 G A SHANK2 Silent p.S1176S 0.10 TCGA-FW-A3R5-06 11 70332927 70332927 G A SHANK2 Silent p.F1158F 0.29 TCGA-FW-A3R5-06 11 70333020 70333020 G A SHANK2 Silent p.F1127F 0.23 TCGA-FW-A3R5-06 11 70333073 70333073 C T SHANK2 Missense_Mutation p.D1110N 0.30 deleterious(0) benign(0.063) TCGA-FW-A3R5-06 11 70333092 70333092 G T SHANK2 Missense_Mutation p.F1103L 0.31 deleterious(0.04) benign(0.055) TCGA-FW-A3R5-06 11 70333310 70333310 G A SHANK2 Missense_Mutation p.P1031S 0.29 deleterious(0.03) benign(0.001) TCGA-FW-A3R5-06 11 70333557 70333557 C T SHANK2 Silent p.E948E 0.37 TCGA-FW-A3R5-06 11 70333646 70333646 C T SHANK2 Missense_Mutation p.G919R 0.38 deleterious(0) benign(0.273) TCGA-FW-A3R5-06 11 70349006 70349006 G A SHANK2 Missense_Mutation p.H699Y 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 7059991 7059991 G A NLRP14 Silent p.L58L 0.17 TCGA-FW-A3R5-06 11 7064557 7064557 G A NLRP14 Missense_Mutation p.G434R 0.29 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 11 7064875 7064875 C T NLRP14 Nonsense_Mutation p.R540* 0.24 TCGA-FW-A3R5-06 11 7091658 7091658 G A NLRP14 Silent p.K1039K 0.36 TCGA-FW-A3R5-06 11 7110373 7110373 G A RBMXL2 Missense_Mutation p.G8R 0.17 deleterious(0.04) possibly_damaging(0.534) TCGA-FW-A3R5-06 11 7110510 7110510 C T RBMXL2 Silent p.F53F 0.23 TCGA-FW-A3R5-06 11 7111037 7111037 G A RBMXL2 Missense_Mutation p.R229Q 0.41 tolerated(0.05) benign(0.238) TCGA-FW-A3R5-06 11 7111184 7111184 C T RBMXL2 Missense_Mutation p.S278F 0.36 deleterious(0.03) benign(0.027) TCGA-FW-A3R5-06 11 7111239 7111239 G A RBMXL2 Silent p.R296R 0.30 TCGA-FW-A3R5-06 11 71150068 71150068 C T DHCR7 Missense_Mutation p.G230R 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 11 71152304 71152304 C T DHCR7 Missense_Mutation p.G199S 0.28 deleterious(0.04) benign(0.072) TCGA-FW-A3R5-06 11 71153328 71153328 C T DHCR7 Silent p.E131E 0.25 TCGA-FW-A3R5-06 11 71238552 71238552 C T KRTAP5-7 Missense_Mutation p.S69F 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 11 71239017 71239017 C T KRTAP5-7 3'UTR 0.21 TCGA-FW-A3R5-06 11 71260054 71260054 C T KRTAP5-9 Silent p.S117S 0.27 TCGA-FW-A3R5-06 11 71276978 71276978 C T KRTAP5-10 Silent p.G115G 0.26 TCGA-FW-A3R5-06 11 71277022 71277022 C T KRTAP5-10 Missense_Mutation p.S130F 0.22 unknown(0) TCGA-FW-A3R5-06 11 71293708 71293708 G A KRTAP5-11 Missense_Mutation p.S59F 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 11 71711488 71711488 C T IL18BP Silent p.A40A 0.26 TCGA-FW-A3R5-06 11 71850684 71850684 C T FOLR3 Missense_Mutation p.P225S 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-FW-A3R5-06 11 71850804 71850804 G A FOLR3 Missense_Mutation p.E265K 0.30 tolerated(0.45) probably_damaging(0.925) TCGA-FW-A3R5-06 11 71903228 71903228 G A FOLR1 Missense_Mutation p.R4Q 0.25 tolerated_low_confidence(0.66) benign(0.001) TCGA-FW-A3R5-06 11 71906994 71906994 C T FOLR1 Missense_Mutation p.P183S 0.08 deleterious(0.03) benign(0.168) TCGA-FW-A3R5-06 11 71907116 71907116 G A FOLR1 Silent p.E223E 0.15 TCGA-FW-A3R5-06 11 71907125 71907125 G A FOLR1 Silent p.A226A 0.33 TCGA-FW-A3R5-06 11 71932855 71932855 G A FOLR2 3'UTR 0.27 TCGA-FW-A3R5-06 11 71940997 71940997 C T INPPL1 Silent p.S291S 0.13 TCGA-FW-A3R5-06 11 71942074 71942074 C T INPPL1 Silent p.F446F 0.19 TCGA-FW-A3R5-06 11 72004417 72004417 G A CLPB Silent p.T706T 0.40 TCGA-FW-A3R5-06 11 72005678 72005678 G A CLPB Missense_Mutation p.R546C 0.29 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 11 721583 721583 C T EPS8L2 Silent p.L263L 0.35 TCGA-FW-A3R5-06 11 722721 722721 C T EPS8L2 Silent p.F419F 0.24 TCGA-FW-A3R5-06 11 72288403 72288403 G A PDE2A 3'UTR 0.27 TCGA-FW-A3R5-06 11 72290353 72290353 G A PDE2A Silent p.F777F 0.36 TCGA-FW-A3R5-06 11 72300277 72300277 C T PDE2A Missense_Mutation p.G294E 0.25 tolerated(0.07) benign(0.113) TCGA-FW-A3R5-06 11 72307659 72307659 C T PDE2A Missense_Mutation p.G156E 0.26 deleterious_low_confidence(0.01) benign(0.007) TCGA-FW-A3R5-06 11 723306 723306 C T EPS8L2 Silent p.T469T 0.22 TCGA-FW-A3R5-06 11 72407608 72407608 G A ARAP1 Silent p.I1086I 0.27 TCGA-FW-A3R5-06 11 72423500 72423500 G A ARAP1 Silent p.A287A 0.40 TCGA-FW-A3R5-06 11 72424106 72424106 G A ARAP1 Intron 0.32 TCGA-FW-A3R5-06 11 724744 724744 C T EPS8L2 Missense_Mutation p.A492V 0.31 tolerated(0.14) benign(0.01) TCGA-FW-A3R5-06 11 72945147 72945147 C T P2RY2 5'UTR 0.27 TCGA-FW-A3R5-06 11 72945666 72945666 C T P2RY2 Silent p.A154A 0.17 TCGA-FW-A3R5-06 11 72945668 72945668 G A P2RY2 Missense_Mutation p.G155E 0.17 deleterious(0.02) benign(0.088) TCGA-FW-A3R5-06 11 72946126 72946126 C T P2RY2 Silent p.L308L 0.23 TCGA-FW-A3R5-06 11 72946451 72946451 G A P2RY2 3'UTR 0.21 TCGA-FW-A3R5-06 11 73007962 73007962 C T P2RY6 Silent p.A133A 0.08 TCGA-FW-A3R5-06 11 7324365 7324365 C T SYT9 Missense_Mutation p.P81S 0.31 deleterious(0.05) possibly_damaging(0.804) TCGA-FW-A3R5-06 11 7334709 7334709 G A SYT9 Missense_Mutation p.G194E 0.09 tolerated(0.35) probably_damaging(0.911) TCGA-FW-A3R5-06 11 7334968 7334968 C T SYT9 Silent p.T280T 0.09 TCGA-FW-A3R5-06 11 73638408 73638408 C T PAAF1 3'UTR 0.24 TCGA-FW-A3R5-06 11 73662134 73662134 C T DNAJB13 Missense_Mutation p.S7F 0.36 deleterious(0.01) benign(0.148) TCGA-FW-A3R5-06 11 73676009 73676009 G A DNAJB13 Missense_Mutation p.E141K 0.28 tolerated(0.22) benign(0.364) TCGA-FW-A3R5-06 11 73677285 73677285 G A DNAJB13 Missense_Mutation p.E199K 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-FW-A3R5-06 11 73679447 73679447 C T DNAJB13 Missense_Mutation p.R222C 0.36 tolerated(0.17) possibly_damaging(0.453) TCGA-FW-A3R5-06 11 73679476 73679476 C T DNAJB13 Silent p.F231F 0.33 TCGA-FW-A3R5-06 11 73681055 73681055 G A DNAJB13 Missense_Mutation p.D283N 0.31 tolerated(0.38) benign(0.007) TCGA-FW-A3R5-06 11 73715533 73715533 G A UCP3 Silent p.L213L 0.22 TCGA-FW-A3R5-06 11 73834126 73834126 G A C2CD3 Silent p.S424S 0.24 TCGA-FW-A3R5-06 11 73844510 73844510 G A C2CD3 Missense_Mutation p.H350Y 0.19 tolerated(1) possibly_damaging(0.713) TCGA-FW-A3R5-06 11 73980758 73980758 G A P4HA3 Missense_Mutation p.S469L 0.30 tolerated(0.09) benign(0.151) TCGA-FW-A3R5-06 11 74009390 74009390 C T P4HA3 Missense_Mutation p.G195E 0.28 tolerated(0.57) benign(0.006) TCGA-FW-A3R5-06 11 74168606 74168606 C T KCNE3 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FW-A3R5-06 11 7439304 7439304 C T SYT9 Missense_Mutation p.P428S 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 11 74429805 74429805 G A CHRDL2 Missense_Mutation p.P52L 0.22 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 11 74429817 74429817 G A CHRDL2 Missense_Mutation p.P48L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 74500681 74500681 C T RNF169 Silent p.F171F 0.07 TCGA-FW-A3R5-06 11 74559185 74559185 C T XRRA1 Missense_Mutation p.S560N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 11 74800531 74800531 G A OR2AT4 Silent p.I76I 0.26 TCGA-FW-A3R5-06 11 74880283 74880283 C T SLCO2B1 Missense_Mutation p.P172S 0.32 tolerated(0.52) benign(0.018) TCGA-FW-A3R5-06 11 74880393 74880393 C T SLCO2B1 Silent p.P208P 0.20 TCGA-FW-A3R5-06 11 74880394 74880394 T C SLCO2B1 Missense_Mutation p.F209L 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 11 74883533 74883533 C T SLCO2B1 Silent p.F297F 0.33 TCGA-FW-A3R5-06 11 74904519 74904519 C T SLCO2B1 Silent p.A444A 0.22 TCGA-FW-A3R5-06 11 75316765 75316765 G A MAP6 Intron 0.39 TCGA-FW-A3R5-06 11 75319244 75319244 C T MAP6 Silent p.E343E 0.09 TCGA-FW-A3R5-06 11 75431059 75431059 C T MOGAT2 Silent p.F38F 0.31 TCGA-FW-A3R5-06 11 75439890 75439890 C T MOGAT2 Missense_Mutation p.P236S 0.32 tolerated(0.67) benign(0.009) TCGA-FW-A3R5-06 11 75442214 75442214 C T MOGAT2 Silent p.P296P 0.28 TCGA-FW-A3R5-06 11 75508211 75508211 C T DGAT2 Missense_Mutation p.P215S 0.31 tolerated(0.31) benign(0.055) TCGA-FW-A3R5-06 11 75509332 75509332 C T DGAT2 Silent p.F290F 0.30 TCGA-FW-A3R5-06 11 75852018 75852018 C T UVRAG Missense_Mutation p.S554F 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.541) TCGA-FW-A3R5-06 11 75898246 75898246 C T WNT11 Missense_Mutation p.D310N 0.34 tolerated(0.54) probably_damaging(0.997) TCGA-FW-A3R5-06 11 75902850 75902850 G A WNT11 Silent p.G216G 0.26 TCGA-FW-A3R5-06 11 76257129 76257129 C T C11orf30 Missense_Mutation p.P1188S 0.28 tolerated_low_confidence(0.14) possibly_damaging(0.901) TCGA-FW-A3R5-06 11 76372213 76372213 C T LRRC32 Missense_Mutation p.E142K 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-FW-A3R5-06 11 76372279 76372279 G A LRRC32 Silent p.L120L 0.29 TCGA-FW-A3R5-06 11 7647019 7647019 C T PPFIBP2 Silent p.A241A 0.32 TCGA-FW-A3R5-06 11 76506753 76506753 C T TSKU Silent p.F31F 0.10 TCGA-FW-A3R5-06 11 76507492 76507492 C T TSKU Silent p.L278L 0.24 TCGA-FW-A3R5-06 11 7656797 7656797 C G PPFIBP2 Missense_Mutation p.N403K 0.14 tolerated(0.92) benign(0.002) TCGA-FW-A3R5-06 11 7661052 7661052 T G PPFIBP2 Silent p.P442P 0.23 TCGA-FW-A3R5-06 11 76709843 76709843 C T ACER3 Nonsense_Mutation p.R159* 0.19 TCGA-FW-A3R5-06 11 76750727 76750727 G A B3GNT6 Silent p.Q44Q 0.36 TCGA-FW-A3R5-06 11 76751273 76751273 C T B3GNT6 Silent p.F226F 0.14 TCGA-FW-A3R5-06 11 76868005 76868005 G A MYO7A Silent p.A230A 0.31 TCGA-FW-A3R5-06 11 76891507 76891507 G A MYO7A Missense_Mutation p.E892K 0.21 tolerated(0.38) possibly_damaging(0.458) TCGA-FW-A3R5-06 11 76900393 76900393 G A MYO7A Missense_Mutation p.E1170K 0.12 deleterious(0) possibly_damaging(0.706) TCGA-FW-A3R5-06 11 76900452 76900452 C T MYO7A Silent p.A1189A 0.36 TCGA-FW-A3R5-06 11 76900491 76900491 C T MYO7A Silent p.F1202F 0.28 TCGA-FW-A3R5-06 11 76912528 76912528 G A MYO7A Missense_Mutation p.G1630R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 76918288 76918288 C T MYO7A Intron 0.38 TCGA-FW-A3R5-06 11 76924069 76924069 C T MYO7A Missense_Mutation p.P2143S 0.58 deleterious(0.03) possibly_damaging(0.678) TCGA-FW-A3R5-06 11 76928222 76928222 C T GDPD4 3'UTR 0.19 TCGA-FW-A3R5-06 11 7694087 7694087 C T CYB5R2 5'UTR 0.30 TCGA-FW-A3R5-06 11 76980019 76980019 C T GDPD4 Missense_Mutation p.E192K 0.26 tolerated(0.42) benign(0.03) TCGA-FW-A3R5-06 11 76980987 76980987 C T GDPD4 Missense_Mutation p.R140K 0.21 tolerated(0.54) benign(0.013) TCGA-FW-A3R5-06 11 76990361 76990361 G A GDPD4 Missense_Mutation p.S46L 0.26 tolerated(0.17) benign(0.017) TCGA-FW-A3R5-06 11 76996199 76996199 G A GDPD4 5'UTR 0.35 TCGA-FW-A3R5-06 11 7723765 7723765 G A OVCH2 Silent p.S134S 0.46 TCGA-FW-A3R5-06 11 77409717 77409717 G A RSF1 Nonsense_Mutation p.R844* 0.19 TCGA-FW-A3R5-06 11 77639588 77639588 G A INTS4 Missense_Mutation p.R391C 0.17 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 11 77702315 77702315 G A INTS4 Nonsense_Mutation p.R29* 0.30 TCGA-FW-A3R5-06 11 77702316 77702316 G A INTS4 Silent p.L28L 0.30 TCGA-FW-A3R5-06 11 77727683 77727683 C T KCTD14 Missense_Mutation p.E242K 0.31 tolerated(1) benign(0) TCGA-FW-A3R5-06 11 77784157 77784157 G A NDUFC2 Missense_Mutation p.A66V 0.23 tolerated(0.98) possibly_damaging(0.524) TCGA-FW-A3R5-06 11 77812146 77812146 G A ALG8 Missense_Mutation p.S482F 0.23 tolerated(0.06) benign(0.192) TCGA-FW-A3R5-06 11 78147847 78147847 G A NARS2 Missense_Mutation p.R435C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 7817655 7817655 G A OR5P2 Missense_Mutation p.P279S 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 7817892 7817892 C T OR5P2 Missense_Mutation p.G200R 0.09 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 11 78369177 78369177 C T TENM4 Missense_Mutation p.E2746K 0.28 deleterious(0) benign(0.158) TCGA-FW-A3R5-06 11 78369603 78369603 G A TENM4 Silent p.L2604L 0.28 TCGA-FW-A3R5-06 11 78372553 78372553 C T TENM4 Missense_Mutation p.E2498K 0.45 deleterious(0.03) benign(0.109) TCGA-FW-A3R5-06 11 78380231 78380231 C T TENM4 Missense_Mutation p.E2387K 0.11 tolerated(0.09) possibly_damaging(0.837) TCGA-FW-A3R5-06 11 78380676 78380676 C T TENM4 Silent p.R2238R 0.35 TCGA-FW-A3R5-06 11 78383099 78383099 C T TENM4 Nonsense_Mutation p.W1924* 0.26 TCGA-FW-A3R5-06 11 78413252 78413252 G A TENM4 Missense_Mutation p.S1469L 0.29 deleterious(0.03) benign(0.15) TCGA-FW-A3R5-06 11 78433820 78433820 G A TENM4 Silent p.A1231A 0.11 TCGA-FW-A3R5-06 11 78440509 78440509 G A TENM4 Silent p.F1106F 0.40 TCGA-FW-A3R5-06 11 78440599 78440599 C T TENM4 Silent p.R1076R 0.29 TCGA-FW-A3R5-06 11 78443370 78443370 C T TENM4 Silent p.P1043P 0.27 TCGA-FW-A3R5-06 11 7846791 7846791 G A OR5P3 Silent p.S243S 0.19 TCGA-FW-A3R5-06 11 7846792 7846792 G A OR5P3 Missense_Mutation p.S243F 0.18 deleterious(0) possibly_damaging(0.651) TCGA-FW-A3R5-06 11 7847058 7847058 C T OR5P3 Silent p.V154V 0.33 TCGA-FW-A3R5-06 11 7847181 7847181 G A OR5P3 Silent p.F113F 0.25 TCGA-FW-A3R5-06 11 7847480 7847480 G A OR5P3 Missense_Mutation p.L14F 0.14 deleterious(0.01) benign(0.027) TCGA-FW-A3R5-06 11 78497958 78497958 C T TENM4 Missense_Mutation p.E784K 0.19 tolerated(0.17) benign(0.31) TCGA-FW-A3R5-06 11 78516338 78516338 G A TENM4 Silent p.I726I 0.23 TCGA-FW-A3R5-06 11 79113073 79113073 C T TENM4 Intron 0.19 TCGA-FW-A3R5-06 11 7949293 7949293 C T OR10A6 Missense_Mutation p.R306Q 0.29 tolerated(0.9) benign(0.004) TCGA-FW-A3R5-06 11 7950045 7950045 G A OR10A6 Silent p.L55L 0.24 TCGA-FW-A3R5-06 11 7950069 7950069 G A OR10A6 Silent p.V47V 0.29 TCGA-FW-A3R5-06 11 7981225 7981225 C T NLRP10 Missense_Mutation p.G645E 0.23 tolerated(0.68) benign(0.006) TCGA-FW-A3R5-06 11 7981739 7981739 G A NLRP10 Missense_Mutation p.H474Y 0.09 tolerated(0.72) benign(0.001) TCGA-FW-A3R5-06 11 7981915 7981915 G A NLRP10 Missense_Mutation p.S415F 0.27 tolerated(0.08) benign(0.055) TCGA-FW-A3R5-06 11 7982054 7982054 C T NLRP10 Missense_Mutation p.E369K 0.30 tolerated(0.1) benign(0.22) TCGA-FW-A3R5-06 11 7982196 7982196 C T NLRP10 Silent p.A321A 0.30 TCGA-FW-A3R5-06 11 7985055 7985055 G A NLRP10 5'UTR 0.19 TCGA-FW-A3R5-06 11 8008845 8008845 C T EIF3F 5'UTR 0.21 TCGA-FW-A3R5-06 11 8008852 8008852 T A EIF3F 5'UTR 0.21 TCGA-FW-A3R5-06 11 8014500 8014500 C T EIF3F Silent p.A194A 0.18 TCGA-FW-A3R5-06 11 8060299 8060299 G A TUB 5'UTR 0.10 TCGA-FW-A3R5-06 11 8118269 8118269 G A TUB Silent p.E256E 0.19 TCGA-FW-A3R5-06 11 8122528 8122528 C T TUB Silent p.I512I 0.18 TCGA-FW-A3R5-06 11 8132205 8132205 C T RIC3 3'UTR 0.35 TCGA-FW-A3R5-06 11 8132554 8132554 C T RIC3 Missense_Mutation p.M267I 0.20 tolerated(0.4) benign(0.009) TCGA-FW-A3R5-06 11 8148302 8148302 G A RIC3 Nonsense_Mutation p.R192* 0.23 TCGA-FW-A3R5-06 11 82625885 82625885 C T C11orf82 Silent p.V35V 0.24 TCGA-FW-A3R5-06 11 82643420 82643420 C T C11orf82 Missense_Mutation p.P347L 0.22 tolerated(0.29) benign(0.012) TCGA-FW-A3R5-06 11 82644405 82644405 C T C11orf82 Silent p.A675A 0.23 TCGA-FW-A3R5-06 11 82644788 82644788 G A C11orf82 Missense_Mutation p.G803D 0.31 tolerated(0.06) benign(0.018) TCGA-FW-A3R5-06 11 82644813 82644813 C T C11orf82 Silent p.F811F 0.30 TCGA-FW-A3R5-06 11 82693265 82693265 G A RAB30 Missense_Mutation p.S185L 0.34 tolerated(0.11) benign(0.016) TCGA-FW-A3R5-06 11 828658 828658 G A EFCAB4A Silent p.G17G 0.22 TCGA-FW-A3R5-06 11 82880378 82880378 C T PCF11 Nonsense_Mutation p.Q1001* 0.26 TCGA-FW-A3R5-06 11 83180398 83180398 C T DLG2 Missense_Mutation p.R822Q 0.18 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 11 83182714 83182714 C T DLG2 Missense_Mutation p.D801N 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 11 83182733 83182733 C T DLG2 Missense_Mutation p.M794I 0.40 deleterious(0) benign(0.003) TCGA-FW-A3R5-06 11 83195246 83195246 C T DLG2 Missense_Mutation p.S740N 0.24 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 11 83770408 83770408 C T DLG2 Missense_Mutation p.R290Q 0.19 tolerated(0.45) probably_damaging(0.988) TCGA-FW-A3R5-06 11 8413987 8413987 C T STK33 3'UTR 0.30 TCGA-FW-A3R5-06 11 8435173 8435173 G A STK33 Missense_Mutation p.P405S 0.31 tolerated(0.16) benign(0.025) TCGA-FW-A3R5-06 11 84634265 84634265 C T DLG2 Intron 0.43 TCGA-FW-A3R5-06 11 8476354 8476354 C T STK33 Silent p.L241L 0.15 TCGA-FW-A3R5-06 11 8478937 8478937 C T STK33 Silent p.R216R 0.26 TCGA-FW-A3R5-06 11 8483425 8483425 C T STK33 Missense_Mutation p.R162Q 0.29 tolerated(0.07) possibly_damaging(0.477) TCGA-FW-A3R5-06 11 8486289 8486289 C T STK33 Silent p.T140T 0.38 TCGA-FW-A3R5-06 11 85436463 85436463 G A SYTL2 Missense_Mutation p.S346F 0.30 deleterious(0) possibly_damaging(0.748) TCGA-FW-A3R5-06 11 85448657 85448657 G A SYTL2 Silent p.S144S 0.15 TCGA-FW-A3R5-06 11 85606413 85606413 G A CCDC83 Missense_Mutation p.E197K 0.27 deleterious(0.04) benign(0.392) TCGA-FW-A3R5-06 11 85627240 85627240 G A CCDC83 Missense_Mutation p.M379I 0.38 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 11 85967484 85967484 C T EED Missense_Mutation p.P161L 0.12 deleterious(0.04) possibly_damaging(0.541) TCGA-FW-A3R5-06 11 85989562 85989562 C T EED Nonsense_Mutation p.R441* 0.27 TCGA-FW-A3R5-06 11 86086067 86086067 C T CCDC81 5'UTR 0.15 TCGA-FW-A3R5-06 11 86126188 86126188 C T CCDC81 Silent p.P508P 0.21 TCGA-FW-A3R5-06 11 86209145 86209145 C T ME3 Missense_Mutation p.E189K 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 86382822 86382822 C T ME3 Silent p.R55R 0.30 TCGA-FW-A3R5-06 11 8704300 8704300 C T RPL27A 5'UTR 0.23 TCGA-FW-A3R5-06 11 8704301 8704301 C T RPL27A 5'UTR 0.22 TCGA-FW-A3R5-06 11 8752443 8752443 G A ST5 Missense_Mutation p.L132F 0.15 tolerated_low_confidence(0.71) benign(0.029) TCGA-FW-A3R5-06 11 87847224 87847224 G A RAB38 Missense_Mutation p.P190S 0.23 tolerated(0.41) benign(0.019) TCGA-FW-A3R5-06 11 88027354 88027354 A G CTSC Silent p.N404N 0.21 TCGA-FW-A3R5-06 11 88027614 88027614 C T CTSC Missense_Mutation p.E318K 0.18 deleterious(0.03) possibly_damaging(0.733) TCGA-FW-A3R5-06 11 88027630 88027630 T C CTSC Silent p.Q312Q 0.27 TCGA-FW-A3R5-06 11 88241775 88241775 G A GRM5 Silent p.S1208S 0.30 TCGA-FW-A3R5-06 11 88258513 88258513 C T GRM5 Missense_Mutation p.G897E 0.27 tolerated_low_confidence(0.55) benign(0.001) TCGA-FW-A3R5-06 11 88300558 88300558 G A GRM5 Missense_Mutation p.P765S 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 88300912 88300912 G A GRM5 Nonsense_Mutation p.Q647* 0.13 TCGA-FW-A3R5-06 11 88583166 88583166 C T GRM5 Silent p.V273V 0.29 TCGA-FW-A3R5-06 11 88583259 88583259 G A GRM5 Silent p.I242I 0.24 TCGA-FW-A3R5-06 11 88780705 88780705 G A GRM5 Silent p.F112F 0.43 TCGA-FW-A3R5-06 11 88780987 88780987 C T GRM5 Silent p.G18G 0.30 TCGA-FW-A3R5-06 11 89028445 89028445 C T TYR Missense_Mutation p.R501C 0.26 deleterious(0.01) benign(0.004) TCGA-FW-A3R5-06 11 89166025 89166025 C T NOX4 Splice_Site p.X159_splice 0.16 TCGA-FW-A3R5-06 11 89391820 89391820 G A FOLH1B 5'Flank 0.33 TCGA-FW-A3R5-06 11 8947545 8947545 C T C11orf16 Silent p.E223E 0.24 TCGA-FW-A3R5-06 11 89531449 89531449 G A TRIM49 Missense_Mutation p.P403L 0.09 deleterious(0.01) benign(0.062) TCGA-FW-A3R5-06 11 89531571 89531571 C T TRIM49 Silent p.R362R 0.21 TCGA-FW-A3R5-06 11 89531723 89531723 C T TRIM49 Missense_Mutation p.G312R 0.21 tolerated(0.78) benign(0.049) TCGA-FW-A3R5-06 11 89537460 89537460 C T TRIM49 Missense_Mutation p.E60K 0.20 tolerated(0.58) benign(0.003) TCGA-FW-A3R5-06 11 89537604 89537604 C T TRIM49 Missense_Mutation p.E12K 0.32 deleterious(0.02) probably_damaging(0.981) TCGA-FW-A3R5-06 11 9042507 9042507 G A SCUBE2 3'UTR 0.29 TCGA-FW-A3R5-06 11 9047337 9047337 G A SCUBE2 Silent p.T865T 0.26 TCGA-FW-A3R5-06 11 9199886 9199886 G A DENND5A Missense_Mutation p.P567S 0.28 tolerated(0.3) benign(0.348) TCGA-FW-A3R5-06 11 92085731 92085731 G A FAT3 Missense_Mutation p.M151I 0.32 benign(0.04) TCGA-FW-A3R5-06 11 92086197 92086197 G A FAT3 Missense_Mutation p.D307N 0.27 probably_damaging(0.999) TCGA-FW-A3R5-06 11 92086445 92086445 C T FAT3 Silent p.S389S 0.35 TCGA-FW-A3R5-06 11 92086447 92086447 C T FAT3 Missense_Mutation p.P390L 0.33 probably_damaging(0.999) TCGA-FW-A3R5-06 11 92086734 92086734 C T FAT3 Missense_Mutation p.P486S 0.10 possibly_damaging(0.794) TCGA-FW-A3R5-06 11 92087032 92087032 G A FAT3 Missense_Mutation p.G585E 0.27 probably_damaging(1) TCGA-FW-A3R5-06 11 92087069 92087069 C T FAT3 Silent p.I597I 0.33 TCGA-FW-A3R5-06 11 92087253 92087253 G A FAT3 Missense_Mutation p.E659K 0.15 probably_damaging(0.998) TCGA-FW-A3R5-06 11 92087396 92087396 G A FAT3 Silent p.L706L 0.22 TCGA-FW-A3R5-06 11 92087437 92087437 G A FAT3 Missense_Mutation p.R720K 0.26 benign(0.109) TCGA-FW-A3R5-06 11 92088157 92088157 C T FAT3 Missense_Mutation p.T960I 0.27 probably_damaging(0.988) TCGA-FW-A3R5-06 11 92088158 92088158 C T FAT3 Silent p.T960T 0.27 TCGA-FW-A3R5-06 11 92495284 92495284 G A FAT3 Missense_Mutation p.G1311E 0.14 probably_damaging(0.987) TCGA-FW-A3R5-06 11 92523184 92523184 G A FAT3 Missense_Mutation p.E1471K 0.17 probably_damaging(1) TCGA-FW-A3R5-06 11 92523361 92523361 G A FAT3 Missense_Mutation p.D1530N 0.26 benign(0.191) TCGA-FW-A3R5-06 11 92531165 92531165 C T FAT3 Silent p.T1662T 0.35 TCGA-FW-A3R5-06 11 92531517 92531517 G A FAT3 Missense_Mutation p.E1780K 0.41 probably_damaging(1) TCGA-FW-A3R5-06 11 92531727 92531727 C T FAT3 Missense_Mutation p.H1850Y 0.25 probably_damaging(0.985) TCGA-FW-A3R5-06 11 92531888 92531888 G A FAT3 Silent p.L1903L 0.20 TCGA-FW-A3R5-06 11 92532058 92532058 G A FAT3 Missense_Mutation p.G1960E 0.35 probably_damaging(1) TCGA-FW-A3R5-06 11 92532279 92532279 G A FAT3 Missense_Mutation p.V2034I 0.29 possibly_damaging(0.517) TCGA-FW-A3R5-06 11 92533858 92533858 G A FAT3 Missense_Mutation p.R2560Q 0.28 probably_damaging(1) TCGA-FW-A3R5-06 11 92533860 92533860 G A FAT3 Missense_Mutation p.E2561K 0.28 probably_damaging(1) TCGA-FW-A3R5-06 11 92534203 92534203 C T FAT3 Missense_Mutation p.S2675L 0.30 probably_damaging(0.966) TCGA-FW-A3R5-06 11 92534248 92534248 C T FAT3 Missense_Mutation p.S2690F 0.28 probably_damaging(0.926) TCGA-FW-A3R5-06 11 92543146 92543146 C T FAT3 Missense_Mutation p.P3129S 0.29 probably_damaging(0.999) TCGA-FW-A3R5-06 11 92564840 92564840 C T FAT3 Silent p.F3178F 0.11 TCGA-FW-A3R5-06 11 92577409 92577409 C T FAT3 Missense_Mutation p.R3626C 0.34 probably_damaging(1) TCGA-FW-A3R5-06 11 92590421 92590421 C T FAT3 Missense_Mutation p.P3803S 0.25 benign(0.083) TCGA-FW-A3R5-06 11 92590422 92590422 C T FAT3 Missense_Mutation p.P3803L 0.23 benign(0.048) TCGA-FW-A3R5-06 11 92600089 92600089 C T FAT3 Silent p.F3947F 0.17 TCGA-FW-A3R5-06 11 92600189 92600189 G A FAT3 Missense_Mutation p.G3981S 0.40 possibly_damaging(0.867) TCGA-FW-A3R5-06 11 92600263 92600263 C T FAT3 Silent p.F4005F 0.33 TCGA-FW-A3R5-06 11 92616111 92616111 C T FAT3 Silent p.F4163F 0.38 TCGA-FW-A3R5-06 11 92616397 92616397 G A FAT3 Missense_Mutation p.E4259K 0.24 benign(0.205) TCGA-FW-A3R5-06 11 92624013 92624013 G A FAT3 Missense_Mutation p.E4502K 0.31 benign(0.014) TCGA-FW-A3R5-06 11 92702991 92702991 C T MTNR1B Missense_Mutation p.P34S 0.36 tolerated(0.15) benign(0.011) TCGA-FW-A3R5-06 11 92714929 92714929 C T MTNR1B Silent p.S180S 0.11 TCGA-FW-A3R5-06 11 92715464 92715464 G A MTNR1B Missense_Mutation p.A359T 0.31 tolerated_low_confidence(0.16) benign(0.018) TCGA-FW-A3R5-06 11 93104242 93104242 A T CCDC67 Missense_Mutation p.K195N 0.38 deleterious(0.03) benign(0.106) TCGA-FW-A3R5-06 11 93104332 93104332 C T CCDC67 Silent p.F225F 0.31 TCGA-FW-A3R5-06 11 93148206 93148206 C T CCDC67 Missense_Mutation p.P522S 0.19 tolerated(0.11) benign(0.024) TCGA-FW-A3R5-06 11 93148220 93148220 G A CCDC67 Silent p.S526S 0.21 TCGA-FW-A3R5-06 11 93170762 93170762 G A CCDC67 Silent p.L564L 0.31 TCGA-FW-A3R5-06 11 93797595 93797595 G A HEPHL1 Missense_Mutation p.E243K 0.27 deleterious(0.03) possibly_damaging(0.7) TCGA-FW-A3R5-06 11 93819207 93819207 C T HEPHL1 Silent p.S644S 0.23 TCGA-FW-A3R5-06 11 93839179 93839179 G A HEPHL1 Silent p.G976G 0.28 TCGA-FW-A3R5-06 11 93911540 93911540 C T PANX1 Silent p.F109F 0.18 TCGA-FW-A3R5-06 11 93912938 93912938 C T PANX1 Missense_Mutation p.S239L 0.23 tolerated(0.4) probably_damaging(0.954) TCGA-FW-A3R5-06 11 94113833 94113833 G A GPR83 Missense_Mutation p.L252F 0.23 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 11 94113920 94113920 G A GPR83 Missense_Mutation p.L223F 0.23 tolerated(0.17) benign(0.169) TCGA-FW-A3R5-06 11 94129588 94129588 C T GPR83 Missense_Mutation p.A164T 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 11 94134036 94134036 G A GPR83 Silent p.P126P 0.34 TCGA-FW-A3R5-06 11 94134256 94134256 T G GPR83 Missense_Mutation p.Q53P 0.19 tolerated(0.2) benign(0.005) TCGA-FW-A3R5-06 11 94153197 94153197 G A MRE11A 3'UTR 0.27 TCGA-FW-A3R5-06 11 94180480 94180480 G A MRE11A Missense_Mutation p.S563L 0.27 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 11 94277910 94277910 C T FUT4 Missense_Mutation p.A204V 0.27 tolerated(0.51) benign(0.002) TCGA-FW-A3R5-06 11 94277911 94277911 C T FUT4 Silent p.A204A 0.27 TCGA-FW-A3R5-06 11 94341758 94341758 C T PIWIL4 Silent p.L617L 0.09 TCGA-FW-A3R5-06 11 94354193 94354193 C T PIWIL4 3'UTR 0.32 TCGA-FW-A3R5-06 11 94731667 94731667 C T KDM4D Silent p.L377L 0.12 TCGA-FW-A3R5-06 11 95521709 95521709 G A FAM76B Missense_Mutation p.P36S 0.12 tolerated(0.13) probably_damaging(0.931) TCGA-FW-A3R5-06 11 9715787 9715787 C T SWAP70 Missense_Mutation p.S65F 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 11 99690308 99690308 C T CNTN5 Missense_Mutation p.S30L 0.09 deleterious_low_confidence(0.01) benign(0.024) TCGA-FW-A3R5-06 11 99690377 99690377 G A CNTN5 Missense_Mutation p.R53Q 0.15 tolerated_low_confidence(0.06) benign(0.002) TCGA-FW-A3R5-06 11 99827539 99827539 G A CNTN5 Silent p.E225E 0.25 TCGA-FW-A3R5-06 11 99827651 99827651 G A CNTN5 Missense_Mutation p.D263N 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 9983625 9983625 T C SBF2 Missense_Mutation p.K580R 0.30 deleterious(0.04) possibly_damaging(0.609) TCGA-FW-A3R5-06 11 9990017 9990017 G A SBF2 Missense_Mutation p.L491F 0.18 tolerated(0.07) benign(0.174) TCGA-FW-A3R5-06 11 99932090 99932090 G A CNTN5 Missense_Mutation p.G376E 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 11 99944898 99944898 G A CNTN5 Silent p.L484L 0.12 TCGA-FW-A3R5-06 12 10010183 10010183 G A CLEC2B Nonsense_Mutation p.Q43* 0.20 TCGA-FW-A3R5-06 12 100200274 100200274 G A ANKS1B Missense_Mutation p.R193C 0.19 deleterious(0) possibly_damaging(0.892) TCGA-FW-A3R5-06 12 100433464 100433464 G A UHRF1BP1L Silent p.V1395V 0.23 TCGA-FW-A3R5-06 12 100451917 100451917 G A UHRF1BP1L Silent p.I1046I 0.27 TCGA-FW-A3R5-06 12 100451918 100451918 A T UHRF1BP1L Missense_Mutation p.I1046N 0.27 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 12 100564756 100564756 C T RP11-175P13.3 3'Flank 0.20 TCGA-FW-A3R5-06 12 100708387 100708387 C T SCYL2 Missense_Mutation p.P364S 0.13 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 12 100774643 100774643 C T SLC17A8 Missense_Mutation p.S89F 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 100813667 100813667 C T SLC17A8 Silent p.V500V 0.27 TCGA-FW-A3R5-06 12 100904848 100904852 TGAGC - NR1H4 Frame_Shift_Del p.E135Vfs*14 0.36 TCGA-FW-A3R5-06 12 100926317 100926317 G A NR1H4 Missense_Mutation p.R186Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 101295475 101295475 G A ANO4 5'UTR 0.12 TCGA-FW-A3R5-06 12 101295478 101295478 G A ANO4 5'UTR 0.34 TCGA-FW-A3R5-06 12 101336183 101336183 G A ANO4 Missense_Mutation p.G74E 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-FW-A3R5-06 12 101365178 101365178 C T ANO4 Missense_Mutation p.P149L 0.24 deleterious(0) possibly_damaging(0.68) TCGA-FW-A3R5-06 12 101413856 101413856 G A ANO4 Missense_Mutation p.R225K 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 12 101480449 101480449 G A ANO4 Silent p.V481V 0.31 TCGA-FW-A3R5-06 12 101488063 101488063 G A ANO4 Silent p.T542T 0.31 TCGA-FW-A3R5-06 12 101491710 101491710 G A ANO4 Missense_Mutation p.E630K 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 12 101493479 101493479 C T ANO4 Silent p.F675F 0.62 TCGA-FW-A3R5-06 12 101510475 101510475 G A ANO4 Silent p.V788V 0.27 TCGA-FW-A3R5-06 12 101510519 101510519 G A ANO4 Missense_Mutation p.R803Q 0.31 tolerated(0.26) benign(0.082) TCGA-FW-A3R5-06 12 101551035 101551035 G A SLC5A8 3'UTR 0.29 TCGA-FW-A3R5-06 12 101551177 101551177 C T SLC5A8 Silent p.K571K 0.21 TCGA-FW-A3R5-06 12 101587521 101587521 G A SLC5A8 Nonsense_Mutation p.Q192* 0.13 TCGA-FW-A3R5-06 12 101679563 101679563 C T UTP20 Missense_Mutation p.S77L 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 12 101680176 101680176 C T UTP20 Missense_Mutation p.S135L 0.30 deleterious(0.03) benign(0.102) TCGA-FW-A3R5-06 12 101684039 101684039 C T UTP20 Missense_Mutation p.S241F 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 101720918 101720918 C T UTP20 Missense_Mutation p.S1034L 0.28 deleterious(0.01) benign(0.309) TCGA-FW-A3R5-06 12 101739389 101739389 C T UTP20 Nonsense_Mutation p.Q1555* 0.24 TCGA-FW-A3R5-06 12 101739420 101739420 C T UTP20 Missense_Mutation p.T1565I 0.21 deleterious(0.01) possibly_damaging(0.558) TCGA-FW-A3R5-06 12 10194154 10194154 G A CLEC9A 5'UTR 0.26 TCGA-FW-A3R5-06 12 102036332 102036332 G A MYBPC1 Silent p.K242K 0.30 TCGA-FW-A3R5-06 12 102045066 102045066 A C MYBPC1 Missense_Mutation p.E449A 0.22 tolerated(0.05) benign(0.1) TCGA-FW-A3R5-06 12 102067320 102067320 G A MYBPC1 Missense_Mutation p.R903K 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-FW-A3R5-06 12 102071146 102071146 A T MYBPC1 Missense_Mutation p.K1021I 0.30 deleterious(0.01) benign(0.146) TCGA-FW-A3R5-06 12 102078195 102078195 C T MYBPC1 Intron 0.25 TCGA-FW-A3R5-06 12 102302023 102302023 C T DRAM1 Silent p.V134V 0.12 TCGA-FW-A3R5-06 12 102315169 102315169 C T DRAM1 3'UTR 0.30 TCGA-FW-A3R5-06 12 10241809 10241809 G A CLEC1A Missense_Mutation p.P43L 0.16 tolerated(0.09) benign(0.007) TCGA-FW-A3R5-06 12 102471194 102471194 G A NUP37 Missense_Mutation p.P210S 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-FW-A3R5-06 12 102569432 102569432 C T PARPBP Silent p.I331I 0.30 TCGA-FW-A3R5-06 12 102591253 102591253 C T PARPBP 3'Flank 0.24 TCGA-FW-A3R5-06 12 102591323 102591323 C T PMCH Missense_Mutation p.E76K 0.21 tolerated(0.1) benign(0.008) TCGA-FW-A3R5-06 12 10279938 10279938 G A CLEC7A Intron 0.30 TCGA-FW-A3R5-06 12 102811671 102811671 G A IGF1 Silent p.I171I 0.34 TCGA-FW-A3R5-06 12 102869433 102869433 C T IGF1 Missense_Mutation p.G70S 0.18 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 12 102869555 102869555 G A IGF1 Missense_Mutation p.S29F 0.14 tolerated(0.48) benign(0.003) TCGA-FW-A3R5-06 12 102872337 102872337 G A IGF1 Intron 0.50 TCGA-FW-A3R5-06 12 10312586 10312586 G A OLR1 Missense_Mutation p.P239S 0.20 tolerated(0.79) benign(0.018) TCGA-FW-A3R5-06 12 103249038 103249038 C T PAH Silent p.L194L 0.16 TCGA-FW-A3R5-06 12 103260388 103260388 G A PAH Silent p.A165A 0.11 TCGA-FW-A3R5-06 12 103352675 103352675 C T ASCL1 Missense_Mutation p.S218F 0.24 deleterious(0) possibly_damaging(0.862) TCGA-FW-A3R5-06 12 104025408 104025408 G A STAB2 Missense_Mutation p.G174R 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 104031893 104031893 G A STAB2 Missense_Mutation p.G270E 0.25 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 12 104031898 104031898 G A STAB2 Missense_Mutation p.G272S 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 104042572 104042572 G A STAB2 Missense_Mutation p.G382E 0.31 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 104044282 104044282 T C STAB2 Missense_Mutation p.Y395H 0.22 tolerated(0.16) benign(0.107) TCGA-FW-A3R5-06 12 104048474 104048474 G A STAB2 Missense_Mutation p.E517K 0.25 tolerated(0.17) benign(0.011) TCGA-FW-A3R5-06 12 104064570 104064570 C T STAB2 Missense_Mutation p.P786S 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-FW-A3R5-06 12 104067702 104067702 G A STAB2 Missense_Mutation p.G797R 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 104071293 104071293 G A STAB2 Silent p.G903G 0.21 TCGA-FW-A3R5-06 12 104081960 104081960 C T STAB2 Silent p.L1004L 0.34 TCGA-FW-A3R5-06 12 104099448 104099448 C T STAB2 Silent p.F1313F 0.25 TCGA-FW-A3R5-06 12 104122736 104122736 C T STAB2 Missense_Mutation p.S1682F 0.26 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 12 104144428 104144428 C T STAB2 Silent p.P2170P 0.26 TCGA-FW-A3R5-06 12 104190698 104190698 G A NT5DC3 Missense_Mutation p.P243S 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-FW-A3R5-06 12 104370702 104370702 C T TDG Silent p.S10S 0.25 TCGA-FW-A3R5-06 12 104376924 104376924 C T TDG Missense_Mutation p.R209C 0.21 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 12 104387256 104387256 C T GLT8D2 Missense_Mutation p.G265E 0.10 deleterious(0) possibly_damaging(0.872) TCGA-FW-A3R5-06 12 104387281 104387281 C T GLT8D2 Missense_Mutation p.E257K 0.26 deleterious(0.01) possibly_damaging(0.622) TCGA-FW-A3R5-06 12 10462072 10462072 G A KLRD1 Silent p.L31L 0.37 TCGA-FW-A3R5-06 12 10462275 10462275 G A KLRD1 Missense_Mutation p.E51K 0.10 deleterious(0.05) benign(0.382) TCGA-FW-A3R5-06 12 10464155 10464155 C T KLRD1 Missense_Mutation p.R86W 0.19 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 12 105151002 105151002 C T CHST11 Silent p.N160N 0.24 TCGA-FW-A3R5-06 12 105199034 105199034 G A SLC41A2 Missense_Mutation p.P540S 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 10531183 10531183 G A KLRK1 Silent p.S133S 0.39 TCGA-FW-A3R5-06 12 10560269 10560269 G A KLRC4 Silent p.L154L 0.10 TCGA-FW-A3R5-06 12 10560278 10560278 G A KLRC4 Nonsense_Mutation p.R151* 0.30 TCGA-FW-A3R5-06 12 10560951 10560951 G A KLRC4 Missense_Mutation p.S106F 0.29 tolerated(0.16) benign(0.026) TCGA-FW-A3R5-06 12 10569274 10569274 G A KLRC3 Silent p.F193F 0.18 TCGA-FW-A3R5-06 12 10583743 10583743 C T KLRC2 Missense_Mutation p.M223I 0.51 tolerated(0.28) benign(0) TCGA-FW-A3R5-06 12 10584713 10584713 G A KLRC2 Silent p.F192F 0.19 TCGA-FW-A3R5-06 12 10603085 10603085 G A KLRC1 Missense_Mutation p.P94L 0.19 tolerated(0.08) possibly_damaging(0.891) TCGA-FW-A3R5-06 12 106460543 106460543 C T NUAK1 3'UTR 0.19 TCGA-FW-A3R5-06 12 106460571 106460571 C T NUAK1 3'UTR 0.22 TCGA-FW-A3R5-06 12 106460850 106460850 G A NUAK1 Silent p.I572I 0.38 TCGA-FW-A3R5-06 12 106461006 106461006 C T NUAK1 Silent p.R520R 0.23 TCGA-FW-A3R5-06 12 106632667 106632667 G A CKAP4 3'UTR 0.30 TCGA-FW-A3R5-06 12 106632699 106632699 G A CKAP4 3'UTR 0.19 TCGA-FW-A3R5-06 12 106633295 106633295 G A CKAP4 Missense_Mutation p.S439F 0.09 tolerated(0.1) possibly_damaging(0.865) TCGA-FW-A3R5-06 12 106704939 106704939 C T TCP11L2 Missense_Mutation p.S29L 0.09 tolerated(0.08) benign(0.416) TCGA-FW-A3R5-06 12 106729593 106729593 G A TCP11L2 Missense_Mutation p.E317K 0.15 tolerated(0.2) benign(0.102) TCGA-FW-A3R5-06 12 106740156 106740156 C T TCP11L2 Nonsense_Mutation p.Q470* 0.23 TCGA-FW-A3R5-06 12 106772153 106772153 C T POLR3B Missense_Mutation p.S202L 0.32 deleterious(0.01) possibly_damaging(0.783) TCGA-FW-A3R5-06 12 106824192 106824192 C T POLR3B Missense_Mutation p.R469C 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 107078653 107078653 C T RFX4 Intron 0.67 TCGA-FW-A3R5-06 12 107113782 107113782 G A RFX4 Missense_Mutation p.E404K 0.28 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3R5-06 12 107125991 107125991 G A RFX4 Missense_Mutation p.E488K 0.19 deleterious(0.05) benign(0.359) TCGA-FW-A3R5-06 12 107393622 107393622 G A CRY1 Missense_Mutation p.P282S 0.34 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 107395596 107395596 G A CRY1 Missense_Mutation p.P181S 0.25 deleterious(0.04) probably_damaging(0.949) TCGA-FW-A3R5-06 12 10772649 10772649 C T STYK1 3'UTR 0.29 TCGA-FW-A3R5-06 12 10772675 10772675 C T STYK1 3'UTR 0.33 TCGA-FW-A3R5-06 12 107914285 107914285 G A BTBD11 Missense_Mutation p.S386N 0.20 tolerated(0.3) benign(0.256) TCGA-FW-A3R5-06 12 107914328 107914328 G A BTBD11 Silent p.G400G 0.12 TCGA-FW-A3R5-06 12 107914329 107914329 G A BTBD11 Missense_Mutation p.E401K 0.12 tolerated(0.32) benign(0.017) TCGA-FW-A3R5-06 12 107914337 107914337 C T BTBD11 Silent p.P403P 0.11 TCGA-FW-A3R5-06 12 108006601 108006601 G A BTBD11 Silent p.A618A 0.22 TCGA-FW-A3R5-06 12 108010940 108010940 C T BTBD11 Silent p.L692L 0.14 TCGA-FW-A3R5-06 12 108012092 108012092 G A BTBD11 Missense_Mutation p.E797K 0.26 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 12 108013806 108013806 C T BTBD11 Silent p.I832I 0.14 TCGA-FW-A3R5-06 12 108013935 108013935 G A BTBD11 Silent p.A875A 0.10 TCGA-FW-A3R5-06 12 108043134 108043134 G A BTBD11 Intron 0.15 TCGA-FW-A3R5-06 12 108051462 108051462 C T BTBD11 Silent p.I1094I 0.29 TCGA-FW-A3R5-06 12 108168886 108168886 C T ASCL4 5'UTR 0.32 TCGA-FW-A3R5-06 12 108168887 108168887 C T ASCL4 5'UTR 0.31 TCGA-FW-A3R5-06 12 10856655 10856655 G A YBX3 Silent p.Y291Y 0.12 TCGA-FW-A3R5-06 12 108618544 108618544 C T WSCD2 Silent p.F237F 0.24 TCGA-FW-A3R5-06 12 108626548 108626548 C T WSCD2 Silent p.S340S 0.30 TCGA-FW-A3R5-06 12 108686626 108686626 C T CMKLR1 Silent p.V38V 0.29 TCGA-FW-A3R5-06 12 108919251 108919251 G A SART3 Missense_Mutation p.R836W 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 108919967 108919967 A G SART3 Missense_Mutation p.L760P 0.10 tolerated(0.28) benign(0.008) TCGA-FW-A3R5-06 12 108985207 108985207 G A TMEM119 3'UTR 0.28 TCGA-FW-A3R5-06 12 108985231 108985231 G A TMEM119 3'UTR 0.16 TCGA-FW-A3R5-06 12 108985509 108985509 C T TMEM119 Silent p.Q217Q 0.13 TCGA-FW-A3R5-06 12 108985516 108985516 C T TMEM119 Missense_Mutation p.G215E 0.28 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 12 108985517 108985517 C T TMEM119 Missense_Mutation p.G215R 0.28 tolerated(0.34) benign(0.276) TCGA-FW-A3R5-06 12 109017754 109017754 C T SELPLG Silent p.G126G 0.36 TCGA-FW-A3R5-06 12 109182393 109182393 G A SSH1 Missense_Mutation p.P841S 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 12 109283259 109283259 G A DAO Silent p.K108K 0.21 TCGA-FW-A3R5-06 12 109293228 109293228 C T DAO Missense_Mutation p.R297C 0.33 tolerated(0.2) benign(0.005) TCGA-FW-A3R5-06 12 109306305 109306305 C T SVOP 3'UTR 0.36 TCGA-FW-A3R5-06 12 109309618 109309618 G A SVOP Silent p.L396L 0.16 TCGA-FW-A3R5-06 12 109509423 109509423 C T USP30 Missense_Mutation p.H163Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 109511303 109511303 C T USP30 Missense_Mutation p.T229I 0.18 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 12 10954432 10954432 G A TAS2R7 Silent p.A246A 0.21 TCGA-FW-A3R5-06 12 10958981 10958981 G A TAS2R8 Missense_Mutation p.S200L 0.39 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 12 10962038 10962038 G A TAS2R9 Nonsense_Mutation p.R213* 0.27 TCGA-FW-A3R5-06 12 109629448 109629448 C T ACACB Silent p.S725S 0.17 TCGA-FW-A3R5-06 12 109677760 109677760 C T ACACB Silent p.F1596F 0.42 TCGA-FW-A3R5-06 12 109683539 109683539 C T ACACB Missense_Mutation p.P1763S 0.27 deleterious(0.01) possibly_damaging(0.843) TCGA-FW-A3R5-06 12 109685438 109685438 C T ACACB Nonsense_Mutation p.Q1867* 0.26 TCGA-FW-A3R5-06 12 109717725 109717725 C T FOXN4 Nonsense_Mutation p.W435* 0.19 TCGA-FW-A3R5-06 12 109723224 109723224 G A FOXN4 Silent p.S262S 0.26 TCGA-FW-A3R5-06 12 10978303 10978303 G A TAS2R10 Missense_Mutation p.S189F 0.33 tolerated(0.1) benign(0.16) TCGA-FW-A3R5-06 12 10978476 10978476 G A TAS2R10 Silent p.F131F 0.31 TCGA-FW-A3R5-06 12 10978659 10978659 G A TAS2R10 Silent p.F70F 0.29 TCGA-FW-A3R5-06 12 109844602 109844602 G A MYO1H Silent p.G308G 0.25 TCGA-FW-A3R5-06 12 109865299 109865299 G A MYO1H Silent p.R603R 0.27 TCGA-FW-A3R5-06 12 109881406 109881406 G A MYO1H Missense_Mutation p.V910M 0.33 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 12 109935691 109935691 C T UBE3B Missense_Mutation p.P261L 0.25 deleterious(0) benign(0.243) TCGA-FW-A3R5-06 12 109937499 109937499 C T UBE3B Silent p.F334F 0.18 TCGA-FW-A3R5-06 12 110009504 110009504 G A MMAB Missense_Mutation p.S49F 0.21 deleterious(0.02) possibly_damaging(0.707) TCGA-FW-A3R5-06 12 110226283 110226283 G A TRPV4 Silent p.L710L 0.24 TCGA-FW-A3R5-06 12 110232227 110232227 G A TRPV4 Silent p.F466F 0.30 TCGA-FW-A3R5-06 12 110399131 110399131 G A GIT2 Silent p.V313V 0.34 TCGA-FW-A3R5-06 12 110418764 110418764 C T GIT2 Silent p.R237R 0.20 TCGA-FW-A3R5-06 12 110463606 110463606 G A ANKRD13A Silent p.E287E 0.30 TCGA-FW-A3R5-06 12 110463607 110463607 G A ANKRD13A Missense_Mutation p.E288K 0.30 tolerated(0.08) possibly_damaging(0.676) TCGA-FW-A3R5-06 12 110495058 110495058 G A C12orf76 Missense_Mutation p.P79S 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FW-A3R5-06 12 11083393 11083393 G A PRH2 Missense_Mutation p.G78D 0.20 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 11083528 11083528 G A PRH2 Missense_Mutation p.G123E 0.27 tolerated_low_confidence(0.12) unknown(0) TCGA-FW-A3R5-06 12 110895368 110895368 G A GPN3 Nonsense_Mutation p.R172* 0.30 TCGA-FW-A3R5-06 12 110895370 110895370 A G GPN3 Missense_Mutation p.F171S 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 12 11091012 11091012 G A TAS2R14 Silent p.S265S 0.08 TCGA-FW-A3R5-06 12 11091013 11091013 G A TAS2R14 Missense_Mutation p.S265F 0.08 tolerated(0.77) benign(0.021) TCGA-FW-A3R5-06 12 111057732 111057732 C T TCTN1 Silent p.V104V 0.24 TCGA-FW-A3R5-06 12 111066773 111066773 C T TCTN1 Intron 0.33 TCGA-FW-A3R5-06 12 111078277 111078277 C T TCTN1 Silent p.L311L 0.36 TCGA-FW-A3R5-06 12 111317719 111317719 C T CCDC63 Missense_Mutation p.H167Y 0.26 deleterious(0.01) possibly_damaging(0.653) TCGA-FW-A3R5-06 12 111319010 111319010 C T CCDC63 Missense_Mutation p.L255F 0.26 deleterious(0.03) benign(0.413) TCGA-FW-A3R5-06 12 111342415 111342415 G A CCDC63 Missense_Mutation p.D456N 0.27 deleterious(0.02) probably_damaging(0.935) TCGA-FW-A3R5-06 12 111348757 111348757 G A MYL2 3'UTR 0.42 TCGA-FW-A3R5-06 12 111353546 111353546 C T MYL2 Missense_Mutation p.D48N 0.32 deleterious(0.04) benign(0.395) TCGA-FW-A3R5-06 12 11149461 11149461 G A TAS2R20 3'UTR 0.15 TCGA-FW-A3R5-06 12 11150314 11150314 G A TAS2R20 Missense_Mutation p.S54F 0.32 deleterious(0.05) benign(0.327) TCGA-FW-A3R5-06 12 111744784 111744784 G T CUX2 Missense_Mutation p.K306N 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 111748007 111748007 G A CUX2 Missense_Mutation p.R474Q 0.22 tolerated(0.08) benign(0.187) TCGA-FW-A3R5-06 12 111748180 111748180 G C CUX2 Missense_Mutation p.G532R 0.17 tolerated(0.07) benign(0.021) TCGA-FW-A3R5-06 12 111748289 111748289 A T CUX2 Missense_Mutation p.K568I 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 12 111772339 111772339 G A CUX2 Silent p.E1007E 0.27 TCGA-FW-A3R5-06 12 111779604 111779604 G A CUX2 Missense_Mutation p.G1136S 0.34 tolerated(0.45) possibly_damaging(0.862) TCGA-FW-A3R5-06 12 111785346 111785346 G A CUX2 Silent p.E1226E 0.22 TCGA-FW-A3R5-06 12 111801115 111801115 G A FAM109A Silent p.F52F 0.16 TCGA-FW-A3R5-06 12 111923659 111923659 G A ATXN2 Missense_Mutation p.S932F 0.22 possibly_damaging(0.862) TCGA-FW-A3R5-06 12 112167654 112167654 C T ACAD10 Nonsense_Mutation p.R461* 0.23 TCGA-FW-A3R5-06 12 112185104 112185104 C T ACAD10 Silent p.A831A 0.41 TCGA-FW-A3R5-06 12 112194227 112194227 G A ACAD10 Missense_Mutation p.E1075K 0.25 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 12 112219820 112219820 G A ALDH2 Silent p.G71G 0.25 TCGA-FW-A3R5-06 12 113285537 113285537 G A RPH3A Silent p.Q40Q 0.34 TCGA-FW-A3R5-06 12 113285641 113285641 G A RPH3A Missense_Mutation p.R75Q 0.29 deleterious(0) benign(0.396) TCGA-FW-A3R5-06 12 113306497 113306497 C T RPH3A Intron 0.20 TCGA-FW-A3R5-06 12 113307484 113307484 C T RPH3A Intron 0.18 TCGA-FW-A3R5-06 12 113346348 113346348 C T OAS1 Missense_Mutation p.S63F 0.32 deleterious(0.01) probably_damaging(0.94) TCGA-FW-A3R5-06 12 113346511 113346511 G A OAS1 Silent p.V117V 0.21 TCGA-FW-A3R5-06 12 11338854 11338854 C T TAS2R42 Silent p.R230R 0.17 TCGA-FW-A3R5-06 12 113388681 113388681 C T OAS3 Missense_Mutation p.P520S 0.25 tolerated(0.46) benign(0.009) TCGA-FW-A3R5-06 12 113388725 113388725 C T OAS3 Silent p.S534S 0.34 TCGA-FW-A3R5-06 12 113388767 113388767 C T OAS3 Silent p.A548A 0.10 TCGA-FW-A3R5-06 12 113403696 113403696 C T OAS3 Nonsense_Mutation p.Q851* 0.23 TCGA-FW-A3R5-06 12 113405329 113405329 G A OAS3 Silent p.R932R 0.26 TCGA-FW-A3R5-06 12 113442792 113442792 C T OAS2 Silent p.L411L 0.27 TCGA-FW-A3R5-06 12 113447007 113447007 G A OAS2 Missense_Mutation p.D671N 0.25 tolerated(0.45) benign(0.05) TCGA-FW-A3R5-06 12 113447062 113447062 G A OAS2 Intron 0.24 TCGA-FW-A3R5-06 12 113448382 113448382 C T OAS2 3'UTR 0.17 TCGA-FW-A3R5-06 12 113532957 113532957 C T DTX1 Silent p.F499F 0.19 TCGA-FW-A3R5-06 12 113544905 113544905 C T RASAL1 Missense_Mutation p.E553K 0.29 tolerated(0.12) benign(0.009) TCGA-FW-A3R5-06 12 113565931 113565931 C T RASAL1 Missense_Mutation p.V59M 0.28 deleterious(0) possibly_damaging(0.717) TCGA-FW-A3R5-06 12 113603608 113603608 G A DDX54 Silent p.F548F 0.25 TCGA-FW-A3R5-06 12 113612944 113612944 G A DDX54 Silent p.F257F 0.10 TCGA-FW-A3R5-06 12 113704138 113704138 C T TPCN1 Missense_Mutation p.P203S 0.34 tolerated(0.06) probably_damaging(1) TCGA-FW-A3R5-06 12 113754419 113754419 G A SLC8B1 Missense_Mutation p.A302V 0.10 tolerated(0.63) benign(0.003) TCGA-FW-A3R5-06 12 113759020 113759020 G A SLC8B1 Missense_Mutation p.P97L 0.14 deleterious(0.02) benign(0.242) TCGA-FW-A3R5-06 12 113825664 113825664 C T PLBD2 Missense_Mutation p.P519S 0.22 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 12 113875773 113875773 C T SDSL Silent p.A293A 0.22 TCGA-FW-A3R5-06 12 113907014 113907014 C T LHX5 Missense_Mutation p.E104K 0.30 deleterious(0.01) possibly_damaging(0.867) TCGA-FW-A3R5-06 12 11420567 11420567 C T PRB3 Intron 0.07 TCGA-FW-A3R5-06 12 114261086 114261086 G A RBM19 Silent p.I942I 0.13 TCGA-FW-A3R5-06 12 114282476 114282476 G A RBM19 Missense_Mutation p.H928Y 0.27 tolerated(0.06) benign(0.027) TCGA-FW-A3R5-06 12 114386804 114386804 G A RBM19 Silent p.V370V 0.11 TCGA-FW-A3R5-06 12 11461349 11461349 C T PRB4 Missense_Mutation p.E190K 0.25 tolerated_low_confidence(0.17) unknown(0) TCGA-FW-A3R5-06 12 11461789 11461789 C T PRB4 Missense_Mutation p.G43E 0.27 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 11461804 11461804 C T PRB4 Missense_Mutation p.G38E 0.14 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 114841688 114841688 C T TBX5 Missense_Mutation p.E6K 0.18 deleterious(0) possibly_damaging(0.454) TCGA-FW-A3R5-06 12 115109849 115109849 G A TBX3 Silent p.L677L 0.44 TCGA-FW-A3R5-06 12 11545877 11545877 C T PRB2 Missense_Mutation p.G379S 0.25 tolerated_low_confidence(0.47) unknown(0) TCGA-FW-A3R5-06 12 11546350 11546350 G A PRB2 Missense_Mutation p.P221L 0.10 tolerated(0.81) unknown(0) TCGA-FW-A3R5-06 12 116429355 116429355 G A MED13L Missense_Mutation p.A1135V 0.36 tolerated(1) unknown(0) TCGA-FW-A3R5-06 12 116429583 116429583 G A MED13L Missense_Mutation p.T1059I 0.23 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 12 117191865 117191865 G A RNFT2 Silent p.K209K 0.27 TCGA-FW-A3R5-06 12 117271695 117271695 C T RNFT2 Silent p.S327S 0.24 TCGA-FW-A3R5-06 12 117290398 117290398 G A RNFT2 3'Flank 0.29 TCGA-FW-A3R5-06 12 117486949 117486949 C T TESC Missense_Mutation p.G75E 0.18 tolerated(0.14) benign(0.004) TCGA-FW-A3R5-06 12 117494630 117494630 G A TESC Missense_Mutation p.R64C 0.65 deleterious(0) possibly_damaging(0.513) TCGA-FW-A3R5-06 12 117655926 117655926 C T NOS1 Missense_Mutation p.R1439Q 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 12 117662894 117662894 G A NOS1 Silent p.L1285L 0.29 TCGA-FW-A3R5-06 12 117665278 117665278 C T NOS1 Missense_Mutation p.E1226K 0.32 deleterious(0.03) possibly_damaging(0.67) TCGA-FW-A3R5-06 12 117665424 117665424 C T NOS1 Nonsense_Mutation p.W1177* 0.24 TCGA-FW-A3R5-06 12 117669776 117669776 G A NOS1 Silent p.V1166V 0.37 TCGA-FW-A3R5-06 12 117681165 117681165 G A NOS1 Missense_Mutation p.R1001C 0.24 tolerated(0.19) probably_damaging(0.991) TCGA-FW-A3R5-06 12 117685228 117685228 G A NOS1 Silent p.I950I 0.32 TCGA-FW-A3R5-06 12 117691445 117691445 C T NOS1 Silent p.V916V 0.21 TCGA-FW-A3R5-06 12 117691541 117691541 G A NOS1 Silent p.F884F 0.12 TCGA-FW-A3R5-06 12 117696924 117696924 C T NOS1 Missense_Mutation p.M793I 0.22 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 12 117710337 117710337 C T NOS1 Silent p.L564L 0.18 TCGA-FW-A3R5-06 12 117728230 117728230 G A NOS1 Missense_Mutation p.P285L 0.27 tolerated(0.09) benign(0.024) TCGA-FW-A3R5-06 12 117768165 117768165 C T NOS1 Missense_Mutation p.G237E 0.22 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 12 117768403 117768403 C T NOS1 Missense_Mutation p.G158R 0.17 tolerated_low_confidence(0.12) benign(0.002) TCGA-FW-A3R5-06 12 117768532 117768532 C T NOS1 Missense_Mutation p.G115R 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 12 117768756 117768756 G A NOS1 Missense_Mutation p.P40L 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-FW-A3R5-06 12 117922301 117922301 C T KSR2 Silent p.K790K 0.25 TCGA-FW-A3R5-06 12 117962654 117962654 G A KSR2 Intron 0.28 TCGA-FW-A3R5-06 12 117968808 117968808 C T KSR2 Silent p.P580P 0.28 TCGA-FW-A3R5-06 12 117977565 117977565 G A KSR2 Missense_Mutation p.S549F 0.13 deleterious(0.02) probably_damaging(0.985) TCGA-FW-A3R5-06 12 117993041 117993041 C T KSR2 Missense_Mutation p.R484Q 0.36 tolerated(0.16) possibly_damaging(0.781) TCGA-FW-A3R5-06 12 117993048 117993048 G A KSR2 Missense_Mutation p.P482S 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 12 117996324 117996324 G A KSR2 Silent p.I460I 0.12 TCGA-FW-A3R5-06 12 118020103 118020103 G A KSR2 Silent p.I411I 0.14 TCGA-FW-A3R5-06 12 118105316 118105316 G A KSR2 Silent p.S378S 0.18 TCGA-FW-A3R5-06 12 118199156 118199156 G A KSR2 Missense_Mutation p.P216S 0.33 tolerated(0.47) benign(0.002) TCGA-FW-A3R5-06 12 118293378 118293378 G A KSR2 Silent p.I109I 0.23 TCGA-FW-A3R5-06 12 118504333 118504333 A T VSIG10 3'UTR 0.29 TCGA-FW-A3R5-06 12 118504350 118504350 G A VSIG10 3'UTR 0.09 TCGA-FW-A3R5-06 12 118511610 118511610 G A VSIG10 Silent p.T371T 0.14 TCGA-FW-A3R5-06 12 118520021 118520021 G A VSIG10 Missense_Mutation p.S192L 0.20 deleterious(0.02) benign(0.418) TCGA-FW-A3R5-06 12 11905494 11905494 C T ETV6 Silent p.I48I 0.26 TCGA-FW-A3R5-06 12 119540121 119540121 C T SRRM4 Missense_Mutation p.P71L 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 12 119583407 119583407 G A SRRM4 Silent p.G331G 0.16 TCGA-FW-A3R5-06 12 119631578 119631578 C T HSPB8 Missense_Mutation p.P169L 0.30 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 12 119926576 119926576 C T CCDC60 Silent p.F154F 0.30 TCGA-FW-A3R5-06 12 119926647 119926647 C T CCDC60 Missense_Mutation p.P178L 0.30 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 12 119942902 119942902 G A CCDC60 Missense_Mutation p.R226Q 0.21 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 12 119942978 119942978 G A CCDC60 Silent p.Q251Q 0.31 TCGA-FW-A3R5-06 12 119943026 119943026 G A CCDC60 Silent p.V267V 0.21 TCGA-FW-A3R5-06 12 119954500 119954500 G A CCDC60 Missense_Mutation p.R319K 0.21 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 12 119961497 119961497 G A CCDC60 Splice_Site p.X368_splice 0.09 TCGA-FW-A3R5-06 12 119966478 119966478 C T CCDC60 Nonsense_Mutation p.Q430* 0.30 TCGA-FW-A3R5-06 12 119978577 119978577 C T CCDC60 3'UTR 0.38 TCGA-FW-A3R5-06 12 12006381 12006381 C T ETV6 Missense_Mutation p.L117F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 120106035 120106035 C T PRKAB1 5'UTR 0.31 TCGA-FW-A3R5-06 12 120135468 120135468 G A CIT Missense_Mutation p.R1960C 0.19 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-FW-A3R5-06 12 120138561 120138561 G A CIT Missense_Mutation p.P1871L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 120148155 120148155 G A CIT Silent p.L1658L 0.39 TCGA-FW-A3R5-06 12 120150415 120150415 G A CIT Silent p.L1555L 0.14 TCGA-FW-A3R5-06 12 120172084 120172084 G A CIT Silent p.L1079L 0.24 TCGA-FW-A3R5-06 12 120241121 120241121 G A CIT Missense_Mutation p.S395L 0.30 tolerated(0.39) benign(0.009) TCGA-FW-A3R5-06 12 120263021 120263021 G A CIT Missense_Mutation p.P302L 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 120502576 120502576 C T CCDC64 Missense_Mutation p.R268C 0.12 tolerated(0.06) benign(0.116) TCGA-FW-A3R5-06 12 120510351 120510351 C T CCDC64 Missense_Mutation p.R376C 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 120530855 120530855 G A CCDC64 Missense_Mutation p.E538K 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-FW-A3R5-06 12 120572392 120572392 G A GCN1L1 Missense_Mutation p.P2383S 0.35 probably_damaging(0.931) TCGA-FW-A3R5-06 12 120582833 120582833 G A GCN1L1 Silent p.A1683A 0.26 TCGA-FW-A3R5-06 12 120598020 120598020 G A GCN1L1 Silent p.L826L 0.23 TCGA-FW-A3R5-06 12 120601056 120601056 G A GCN1L1 Missense_Mutation p.P619L 0.30 benign(0.229) TCGA-FW-A3R5-06 12 120992561 120992561 C T RNF10 Missense_Mutation p.H199Y 0.20 tolerated(0.05) benign(0.006) TCGA-FW-A3R5-06 12 121002954 121002954 C T RNF10 Missense_Mutation p.P582L 0.10 deleterious(0) benign(0.211) TCGA-FW-A3R5-06 12 121434128 121434128 C T HNF1A Missense_Mutation p.P340L 0.27 tolerated(0.1) benign(0.116) TCGA-FW-A3R5-06 12 121458439 121458439 C T OASL Silent p.G490G 0.28 TCGA-FW-A3R5-06 12 121469298 121469298 G A OASL Missense_Mutation p.R202W 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-FW-A3R5-06 12 121593886 121593886 A T P2RX7 Missense_Mutation p.N100I 0.29 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 12 121593887 121593887 C T P2RX7 Silent p.N100N 0.29 TCGA-FW-A3R5-06 12 121683011 121683011 G A CAMKK2 Silent p.S495S 0.44 TCGA-FW-A3R5-06 12 121790166 121790166 G A ANAPC5 5'UTR 0.22 TCGA-FW-A3R5-06 12 121932424 121932424 G A KDM2B Silent p.I564I 0.24 TCGA-FW-A3R5-06 12 121947613 121947613 G A KDM2B Silent p.F468F 0.16 TCGA-FW-A3R5-06 12 122018775 122018775 G A KDM2B Silent p.P14P 0.21 TCGA-FW-A3R5-06 12 122209422 122209422 C T TMEM120B Missense_Mutation p.R216C 0.23 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 122218831 122218831 C T RHOF Missense_Mutation p.E140K 0.29 tolerated(0.51) probably_damaging(0.989) TCGA-FW-A3R5-06 12 122277548 122277548 G A HPD 3'UTR 0.36 TCGA-FW-A3R5-06 12 122281721 122281721 C T HPD Silent p.E283E 0.36 TCGA-FW-A3R5-06 12 122292683 122292683 C T HPD Missense_Mutation p.G114S 0.12 deleterious(0.01) possibly_damaging(0.785) TCGA-FW-A3R5-06 12 122353804 122353804 C T PSMD9 Nonsense_Mutation p.Q200* 0.12 TCGA-FW-A3R5-06 12 122481924 122481924 C T BCL7A Missense_Mutation p.A135V 0.10 tolerated(0.16) benign(0.004) TCGA-FW-A3R5-06 12 122618396 122618396 C T MLXIP Missense_Mutation p.P532S 0.21 tolerated(0.25) benign(0.009) TCGA-FW-A3R5-06 12 122677421 122677421 G A LRRC43 Missense_Mutation p.E407K 0.31 tolerated(0.71) benign(0.023) TCGA-FW-A3R5-06 12 122702927 122702927 G A DIABLO Silent p.S67S 0.13 TCGA-FW-A3R5-06 12 122958467 122958467 G A ZCCHC8 Silent p.V567V 0.26 TCGA-FW-A3R5-06 12 12300456 12300456 G A LRP6 Missense_Mutation p.P1081S 0.22 tolerated(0.08) possibly_damaging(0.684) TCGA-FW-A3R5-06 12 123187023 123187023 G A HCAR2 Missense_Mutation p.R270C 0.13 deleterious(0.01) possibly_damaging(0.67) TCGA-FW-A3R5-06 12 123187024 123187024 G A HCAR2 Silent p.Y269Y 0.14 TCGA-FW-A3R5-06 12 123187333 123187333 C T HCAR2 Silent p.K166K 0.25 TCGA-FW-A3R5-06 12 123187479 123187479 G A HCAR2 Missense_Mutation p.L118F 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 123187618 123187618 C T HCAR2 Silent p.V71V 0.33 TCGA-FW-A3R5-06 12 123200699 123200699 C T HCAR3 Missense_Mutation p.E196K 0.21 tolerated(0.05) probably_damaging(0.985) TCGA-FW-A3R5-06 12 123200717 123200717 C T HCAR3 Missense_Mutation p.E190K 0.22 tolerated(0.21) benign(0.443) TCGA-FW-A3R5-06 12 123214634 123214634 C T HCAR1 Missense_Mutation p.D85N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 12 123214755 123214755 C T HCAR1 Missense_Mutation p.M44I 0.25 tolerated(0.09) benign(0.126) TCGA-FW-A3R5-06 12 123285917 123285917 C T CCDC62 Silent p.N408N 0.18 TCGA-FW-A3R5-06 12 123444423 123444423 G A ABCB9 Silent p.F120F 0.31 TCGA-FW-A3R5-06 12 123481366 123481366 G A PITPNM2 Missense_Mutation p.P522S 0.23 tolerated(0.2) probably_damaging(0.998) TCGA-FW-A3R5-06 12 123481976 123481976 G A PITPNM2 Silent p.F456F 0.27 TCGA-FW-A3R5-06 12 123489863 123489863 C T PITPNM2 Silent p.G292G 0.32 TCGA-FW-A3R5-06 12 123494522 123494522 G A PITPNM2 Missense_Mutation p.S173F 0.34 deleterious(0.01) possibly_damaging(0.789) TCGA-FW-A3R5-06 12 123498383 123498383 G A PITPNM2 Silent p.T95T 0.17 TCGA-FW-A3R5-06 12 123751787 123751787 G A CDK2AP1 Missense_Mutation p.S33L 0.22 deleterious(0.01) benign(0.328) TCGA-FW-A3R5-06 12 123821032 123821032 G A SBNO1 Missense_Mutation p.P220S 0.25 tolerated(0.14) benign(0.114) TCGA-FW-A3R5-06 12 123900267 123900267 G A RILPL2 3'UTR 0.26 TCGA-FW-A3R5-06 12 124090660 124090660 T A DDX55 Missense_Mutation p.I67N 0.22 deleterious(0) possibly_damaging(0.781) TCGA-FW-A3R5-06 12 124094582 124094582 C T DDX55 Silent p.G216G 0.31 TCGA-FW-A3R5-06 12 124135583 124135583 C T GTF2H3 Missense_Mutation p.S136F 0.34 deleterious(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 12 124172600 124172600 C T TCTN2 Missense_Mutation p.S256F 0.22 deleterious(0.02) probably_damaging(0.943) TCGA-FW-A3R5-06 12 124229290 124229290 C T ATP6V0A2 Silent p.S491S 0.26 TCGA-FW-A3R5-06 12 124239059 124239059 C T ATP6V0A2 Silent p.L756L 0.18 TCGA-FW-A3R5-06 12 124258721 124258721 G A DNAH10 Missense_Mutation p.M116I 0.19 benign(0.004) TCGA-FW-A3R5-06 12 124268560 124268560 G A DNAH10 Missense_Mutation p.E295K 0.31 possibly_damaging(0.718) TCGA-FW-A3R5-06 12 124283841 124283841 G A DNAH10 Missense_Mutation p.D620N 0.16 benign(0.008) TCGA-FW-A3R5-06 12 124305219 124305219 C T DNAH10 Missense_Mutation p.P1247S 0.21 benign(0.285) TCGA-FW-A3R5-06 12 124311371 124311371 G A DNAH10 Silent p.L1321L 0.40 TCGA-FW-A3R5-06 12 124317829 124317829 G C DNAH10 Missense_Mutation p.G1454R 0.08 benign(0.314) TCGA-FW-A3R5-06 12 124317830 124317830 G A DNAH10 Missense_Mutation p.G1454E 0.08 possibly_damaging(0.833) TCGA-FW-A3R5-06 12 124325875 124325875 G A DNAH10 Missense_Mutation p.D1597N 0.11 probably_damaging(0.999) TCGA-FW-A3R5-06 12 124333366 124333366 C T DNAH10 Silent p.S1895S 0.22 TCGA-FW-A3R5-06 12 124345682 124345682 G A DNAH10 Silent p.R2173R 0.38 TCGA-FW-A3R5-06 12 124355019 124355019 C T DNAH10 Silent p.F2424F 0.24 TCGA-FW-A3R5-06 12 124359953 124359953 C T DNAH10 Missense_Mutation p.S2587L 0.22 probably_damaging(0.996) TCGA-FW-A3R5-06 12 124360020 124360020 C T DNAH10 Silent p.I2609I 0.23 TCGA-FW-A3R5-06 12 124371784 124371784 G A DNAH10 Silent p.A2855A 0.34 TCGA-FW-A3R5-06 12 124393810 124393810 C T DNAH10 Missense_Mutation p.S3155L 0.41 probably_damaging(0.983) TCGA-FW-A3R5-06 12 124401062 124401062 G A DNAH10 Missense_Mutation p.G3476E 0.11 probably_damaging(1) TCGA-FW-A3R5-06 12 124401103 124401103 C T DNAH10 Missense_Mutation p.P3490S 0.16 probably_damaging(0.996) TCGA-FW-A3R5-06 12 124413966 124413966 G A DNAH10 Missense_Mutation p.E4033K 0.22 probably_damaging(0.999) TCGA-FW-A3R5-06 12 124421994 124421994 G A CCDC92 Missense_Mutation p.R203C 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 124428909 124428909 A C CCDC92 Intron 0.41 TCGA-FW-A3R5-06 12 12482917 12482917 G A MANSC1 3'UTR 0.57 TCGA-FW-A3R5-06 12 12482918 12482918 G A MANSC1 3'UTR 0.53 TCGA-FW-A3R5-06 12 12483637 12483637 G A MANSC1 Missense_Mutation p.S207L 0.29 tolerated(0.35) benign(0.008) TCGA-FW-A3R5-06 12 124840115 124840115 G A NCOR2 Missense_Mutation p.H1082Y 0.46 probably_damaging(0.984) TCGA-FW-A3R5-06 12 124846820 124846820 G A NCOR2 Silent p.P984P 0.35 TCGA-FW-A3R5-06 12 124848315 124848315 G A NCOR2 Silent p.T946T 0.34 TCGA-FW-A3R5-06 12 124856640 124856640 G A NCOR2 Missense_Mutation p.P912L 0.21 possibly_damaging(0.596) TCGA-FW-A3R5-06 12 124915205 124915205 G A NCOR2 Silent p.F337F 0.23 TCGA-FW-A3R5-06 12 12496026 12496026 C T MANSC1 Missense_Mutation p.G75R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 125270724 125270724 G A SCARB1 Intron 0.41 TCGA-FW-A3R5-06 12 125396438 125396438 G A UBC Missense_Mutation p.P627L 0.26 tolerated(0.14) benign(0.094) TCGA-FW-A3R5-06 12 125397806 125397806 G A UBC Missense_Mutation p.P171L 0.10 tolerated(0.09) possibly_damaging(0.864) TCGA-FW-A3R5-06 12 125435305 125435305 G A DHX37 Missense_Mutation p.L972F 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 125591686 125591686 C T AACS Missense_Mutation p.L263F 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-FW-A3R5-06 12 125599088 125599088 C T AACS Silent p.L327L 0.21 TCGA-FW-A3R5-06 12 125621339 125621339 C T AACS Missense_Mutation p.R604C 0.19 tolerated(0.13) benign(0.006) TCGA-FW-A3R5-06 12 125621386 125621386 C T AACS Silent p.L619L 0.31 TCGA-FW-A3R5-06 12 125834479 125834479 G A TMEM132B Silent p.G178G 0.26 TCGA-FW-A3R5-06 12 125834783 125834783 G A TMEM132B Missense_Mutation p.E280K 0.27 tolerated(0.18) benign(0.071) TCGA-FW-A3R5-06 12 126128661 126128661 G A TMEM132B Missense_Mutation p.E488K 0.25 deleterious(0) possibly_damaging(0.886) TCGA-FW-A3R5-06 12 126137028 126137028 G A TMEM132B Silent p.T647T 0.31 TCGA-FW-A3R5-06 12 126137038 126137038 C T TMEM132B Silent p.L651L 0.18 TCGA-FW-A3R5-06 12 126138293 126138293 G A TMEM132B Silent p.L758L 0.14 TCGA-FW-A3R5-06 12 126138578 126138578 C T TMEM132B Silent p.P853P 0.18 TCGA-FW-A3R5-06 12 126138985 126138985 C T TMEM132B Missense_Mutation p.S989F 0.41 deleterious(0.02) probably_damaging(0.982) TCGA-FW-A3R5-06 12 126138999 126138999 C T TMEM132B Missense_Mutation p.H994Y 0.31 tolerated(0.3) benign(0.039) TCGA-FW-A3R5-06 12 12814457 12814457 G A GPR19 Missense_Mutation p.S309F 0.28 deleterious(0.02) benign(0.025) TCGA-FW-A3R5-06 12 130831552 130831552 G A PIWIL1 Missense_Mutation p.E200K 0.10 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 12 130841476 130841476 C T PIWIL1 Missense_Mutation p.P473L 0.49 tolerated(0.08) possibly_damaging(0.662) TCGA-FW-A3R5-06 12 130845791 130845791 G A PIWIL1 Missense_Mutation p.D578N 0.43 tolerated(0.08) probably_damaging(0.975) TCGA-FW-A3R5-06 12 130846099 130846099 G A PIWIL1 Silent p.R641R 0.12 TCGA-FW-A3R5-06 12 130855747 130855747 C T PIWIL1 Missense_Mutation p.A783V 0.37 tolerated(0.38) possibly_damaging(0.811) TCGA-FW-A3R5-06 12 130919328 130919328 C T RIMBP2 Missense_Mutation p.R718K 0.39 tolerated(0.08) benign(0.101) TCGA-FW-A3R5-06 12 130926778 130926778 C T RIMBP2 Silent p.K356K 0.31 TCGA-FW-A3R5-06 12 130927205 130927205 C T RIMBP2 Missense_Mutation p.G214E 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 130934774 130934774 C T RIMBP2 Silent p.G167G 0.12 TCGA-FW-A3R5-06 12 131466464 131466464 G A GPR133 Missense_Mutation p.E116K 0.15 tolerated_low_confidence(0.17) benign(0.232) TCGA-FW-A3R5-06 12 131487353 131487353 G A GPR133 Intron 0.23 TCGA-FW-A3R5-06 12 132212883 132212883 C T SFSWAP Missense_Mutation p.R331C 0.34 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 12 132334539 132334539 C T MMP17 Missense_Mutation p.P466L 0.41 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 12 132400950 132400950 C T ULK1 Missense_Mutation p.P629L 0.14 deleterious(0) benign(0.424) TCGA-FW-A3R5-06 12 132445295 132445295 C T EP400 Missense_Mutation p.P44L 0.42 unknown(0) TCGA-FW-A3R5-06 12 132471079 132471079 C T EP400 Silent p.L650L 0.37 TCGA-FW-A3R5-06 12 132471171 132471171 C T EP400 Missense_Mutation p.S681F 0.42 unknown(0) TCGA-FW-A3R5-06 12 132529451 132529451 C T EP400 Missense_Mutation p.P2246L 0.35 unknown(0) TCGA-FW-A3R5-06 12 133208969 133208969 G A POLE Missense_Mutation p.P2088S 0.12 deleterious(0.03) probably_damaging(0.987) TCGA-FW-A3R5-06 12 133272542 133272542 C T PXMP2 Silent p.P103P 0.10 TCGA-FW-A3R5-06 12 133306681 133306681 G A ANKLE2 Silent p.A689A 0.10 TCGA-FW-A3R5-06 12 133389993 133389993 G A GOLGA3 Missense_Mutation p.S140F 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.739) TCGA-FW-A3R5-06 12 133428221 133428221 C G CHFR Missense_Mutation p.R504P 0.39 tolerated(0.1) possibly_damaging(0.572) TCGA-FW-A3R5-06 12 133502373 133502373 G A ZNF605 Silent p.P535P 0.40 TCGA-FW-A3R5-06 12 133780482 133780482 C T ZNF268 Missense_Mutation p.S737L 0.16 deleterious(0.03) benign(0.387) TCGA-FW-A3R5-06 12 13529186 13529186 G A C12orf36 Silent p.L52L 0.20 TCGA-FW-A3R5-06 12 13715631 13715631 C T GRIN2B 3'UTR 0.35 TCGA-FW-A3R5-06 12 13715710 13715710 C T GRIN2B 3'UTR 0.23 TCGA-FW-A3R5-06 12 13715712 13715712 C T GRIN2B 3'UTR 0.29 TCGA-FW-A3R5-06 12 13715998 13715998 C T GRIN2B Missense_Mutation p.G1392R 0.28 tolerated(0.5) probably_damaging(0.97) TCGA-FW-A3R5-06 12 13716045 13716045 G A GRIN2B Missense_Mutation p.S1376L 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 13716551 13716551 C T GRIN2B Silent p.E1207E 0.28 TCGA-FW-A3R5-06 12 13716834 13716834 G A GRIN2B Missense_Mutation p.P1113L 0.31 tolerated(0.1) possibly_damaging(0.738) TCGA-FW-A3R5-06 12 13716952 13716952 C T GRIN2B Missense_Mutation p.E1074K 0.41 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 13717239 13717239 C T GRIN2B Missense_Mutation p.S978N 0.15 tolerated(0.49) benign(0.272) TCGA-FW-A3R5-06 12 13717552 13717552 C T GRIN2B Missense_Mutation p.G874R 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 13720097 13720097 C T GRIN2B Silent p.G820G 0.22 TCGA-FW-A3R5-06 12 13764672 13764672 G A GRIN2B Silent p.L589L 0.17 TCGA-FW-A3R5-06 12 13906452 13906452 G A GRIN2B Missense_Mutation p.P270L 0.18 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 12 13906819 13906819 G A GRIN2B Missense_Mutation p.P148S 0.10 tolerated(0.5) probably_damaging(1) TCGA-FW-A3R5-06 12 14018779 14018779 G A GRIN2B Missense_Mutation p.P122S 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 14018946 14018946 G A GRIN2B Missense_Mutation p.P66L 0.21 tolerated(0.26) probably_damaging(1) TCGA-FW-A3R5-06 12 14577226 14577226 C T ATF7IP Missense_Mutation p.P126L 0.15 deleterious_low_confidence(0) benign(0.004) TCGA-FW-A3R5-06 12 14577496 14577496 C T ATF7IP Missense_Mutation p.P216L 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-FW-A3R5-06 12 14613922 14613922 C T ATF7IP Silent p.A884A 0.13 TCGA-FW-A3R5-06 12 14650966 14650966 C T ATF7IP Missense_Mutation p.P1258S 0.15 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 14664469 14664469 C T PLBD1 Missense_Mutation p.D341N 0.30 tolerated(0.16) benign(0.006) TCGA-FW-A3R5-06 12 14706282 14706282 C T PLBD1 Missense_Mutation p.M60I 0.15 tolerated(0.17) benign(0.003) TCGA-FW-A3R5-06 12 14706316 14706316 G A PLBD1 Missense_Mutation p.P49L 0.16 deleterious(0.02) benign(0.428) TCGA-FW-A3R5-06 12 14766126 14766126 C T GUCY2C Silent p.R1049R 0.21 TCGA-FW-A3R5-06 12 14766127 14766127 C T GUCY2C Missense_Mutation p.R1049Q 0.21 tolerated(0.09) benign(0.077) TCGA-FW-A3R5-06 12 14772190 14772190 C T GUCY2C Missense_Mutation p.G944R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 14781671 14781671 C T GUCY2C Missense_Mutation p.V720M 0.16 deleterious(0.03) probably_damaging(0.936) TCGA-FW-A3R5-06 12 14809496 14809496 C T GUCY2C Missense_Mutation p.E474K 0.24 deleterious(0.03) benign(0.284) TCGA-FW-A3R5-06 12 14832636 14832636 C T GUCY2C Missense_Mutation p.R262Q 0.29 tolerated(0.6) benign(0.009) TCGA-FW-A3R5-06 12 14834375 14834375 G A GUCY2C Silent p.F216F 0.19 TCGA-FW-A3R5-06 12 14942001 14942001 G A WBP11 Missense_Mutation p.P459L 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 12 15038731 15038731 C T MGP 5'UTR 0.26 TCGA-FW-A3R5-06 12 15090909 15090909 C T ERP27 Missense_Mutation p.V58M 0.18 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 12 15090925 15090925 G A ERP27 Silent p.F52F 0.07 TCGA-FW-A3R5-06 12 15262412 15262412 C T RERG Missense_Mutation p.E78K 0.10 deleterious(0.01) benign(0.159) TCGA-FW-A3R5-06 12 15262433 15262433 C T RERG Missense_Mutation p.E71K 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 15262451 15262451 C T RERG Missense_Mutation p.E65K 0.20 deleterious(0.01) benign(0.147) TCGA-FW-A3R5-06 12 15370549 15370549 G A RERG Intron 0.27 TCGA-FW-A3R5-06 12 15637062 15637062 C T PTPRO Missense_Mutation p.T77I 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 15677785 15677785 C T PTPRO Silent p.F643F 0.28 TCGA-FW-A3R5-06 12 15702076 15702076 C T PTPRO Missense_Mutation p.P785S 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-FW-A3R5-06 12 15734690 15734690 G A PTPRO Silent p.E1070E 0.30 TCGA-FW-A3R5-06 12 16757809 16757809 C T LMO3 Intron 0.26 TCGA-FW-A3R5-06 12 1755004 1755004 C T WNT5B Silent p.V222V 0.19 TCGA-FW-A3R5-06 12 1755118 1755118 G A WNT5B Silent p.K260K 0.34 TCGA-FW-A3R5-06 12 176580 176580 G A IQSEC3 Missense_Mutation p.G178S 0.12 tolerated(0.36) benign(0.235) TCGA-FW-A3R5-06 12 18234369 18234369 C T RERGL Missense_Mutation p.R125Q 0.28 tolerated(0.81) benign(0.004) TCGA-FW-A3R5-06 12 18435305 18435305 C T PIK3C2G Missense_Mutation p.S97F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.534) TCGA-FW-A3R5-06 12 18435407 18435407 G A PIK3C2G Missense_Mutation p.G131E 0.25 tolerated_low_confidence(0.54) benign(0.025) TCGA-FW-A3R5-06 12 18524140 18524140 C T PIK3C2G Missense_Mutation p.S551L 0.30 deleterious(0.04) possibly_damaging(0.672) TCGA-FW-A3R5-06 12 18524229 18524229 C T PIK3C2G Missense_Mutation p.P581S 0.22 deleterious(0.02) probably_damaging(0.98) TCGA-FW-A3R5-06 12 18691100 18691100 C T PIK3C2G Missense_Mutation p.P1071S 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-FW-A3R5-06 12 18715676 18715676 G A PIK3C2G Silent p.L1169L 0.17 TCGA-FW-A3R5-06 12 18715720 18715720 C T PIK3C2G Missense_Mutation p.P1184L 0.24 tolerated(0.13) benign(0.008) TCGA-FW-A3R5-06 12 18865907 18865907 C T PLCZ1 Missense_Mutation p.G195R 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 18865911 18865911 C T PLCZ1 Silent p.V193V 0.28 TCGA-FW-A3R5-06 12 18876381 18876381 G A PLCZ1 Silent p.F77F 0.29 TCGA-FW-A3R5-06 12 18890415 18890415 C T PLCZ1 5'UTR 0.19 TCGA-FW-A3R5-06 12 18891226 18891226 G A CAPZA3 Silent p.R8R 0.24 TCGA-FW-A3R5-06 12 18891236 18891236 G A CAPZA3 Missense_Mutation p.E12K 0.08 tolerated(0.06) possibly_damaging(0.747) TCGA-FW-A3R5-06 12 1943501 1943501 C T LRTM2 Missense_Mutation p.P243S 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 1943503 1943503 C T LRTM2 Silent p.P243P 0.22 TCGA-FW-A3R5-06 12 1953644 1953644 G A CACNA2D4 Silent p.F798F 0.34 TCGA-FW-A3R5-06 12 1953695 1953695 C T CACNA2D4 Silent p.R781R 0.18 TCGA-FW-A3R5-06 12 1987498 1987498 G A CACNA2D4 Missense_Mutation p.P568S 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 1993972 1993972 C T CACNA2D4 Missense_Mutation p.E412K 0.27 tolerated(0.42) benign(0.013) TCGA-FW-A3R5-06 12 1994036 1994036 G A CACNA2D4 Silent p.A390A 0.26 TCGA-FW-A3R5-06 12 1996215 1996215 C T CACNA2D4 Missense_Mutation p.E268K 0.24 deleterious(0.05) benign(0.043) TCGA-FW-A3R5-06 12 1996226 1996226 C T CACNA2D4 Nonsense_Mutation p.W264* 0.20 TCGA-FW-A3R5-06 12 2017126 2017126 G A CACNA2D4 Silent p.L188L 0.15 TCGA-FW-A3R5-06 12 2022194 2022194 C T CACNA2D4 Missense_Mutation p.V141I 0.17 tolerated(0.26) benign(0.066) TCGA-FW-A3R5-06 12 2022195 2022195 C T CACNA2D4 Silent p.A140A 0.17 TCGA-FW-A3R5-06 12 20522568 20522568 G A PDE3A Missense_Mutation p.G117E 0.33 tolerated_low_confidence(0.22) probably_damaging(0.998) TCGA-FW-A3R5-06 12 2062038 2062038 G A DCP1B Silent p.F356F 0.20 TCGA-FW-A3R5-06 12 20709625 20709625 G A PDE3A Missense_Mutation p.R331Q 0.10 tolerated(1) probably_damaging(0.923) TCGA-FW-A3R5-06 12 20782849 20782849 C T PDE3A Silent p.L516L 0.27 TCGA-FW-A3R5-06 12 20782881 20782881 C T PDE3A Missense_Mutation p.S527F 0.28 tolerated(0.35) benign(0.022) TCGA-FW-A3R5-06 12 20790053 20790053 C T PDE3A Missense_Mutation p.P674L 0.33 tolerated(0.13) benign(0.244) TCGA-FW-A3R5-06 12 20790154 20790154 G A PDE3A Missense_Mutation p.G708S 0.22 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 12 20801637 20801637 G A PDE3A Missense_Mutation p.D861N 0.26 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 12 20801753 20801753 C T PDE3A Silent p.F899F 0.19 TCGA-FW-A3R5-06 12 20806929 20806929 C T PDE3A Missense_Mutation p.R992C 0.25 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 12 20874894 20874894 C T SLCO1C1 Missense_Mutation p.S311F 0.10 deleterious(0.02) possibly_damaging(0.492) TCGA-FW-A3R5-06 12 20893163 20893163 G A SLCO1C1 Missense_Mutation p.G532R 0.21 tolerated(0.17) benign(0.168) TCGA-FW-A3R5-06 12 20968613 20968613 C T LST3 5'UTR 0.41 TCGA-FW-A3R5-06 12 21015720 21015720 C T SLCO1B3 Missense_Mutation p.P220L 0.13 tolerated(0.09) benign(0.084) TCGA-FW-A3R5-06 12 21028279 21028279 C T SLCO1B3 Missense_Mutation p.P280S 0.22 deleterious(0.02) possibly_damaging(0.58) TCGA-FW-A3R5-06 12 21032513 21032513 C T SLCO1B3 Missense_Mutation p.P427S 0.28 tolerated(0.48) benign(0.006) TCGA-FW-A3R5-06 12 21033937 21033937 G A SLCO1B3 Missense_Mutation p.G494S 0.28 tolerated(0.08) possibly_damaging(0.856) TCGA-FW-A3R5-06 12 21036508 21036508 G A SLCO1B3 Missense_Mutation p.G552S 0.10 tolerated(0.42) benign(0.034) TCGA-FW-A3R5-06 12 21051370 21051370 G A SLCO1B3 Silent p.K561K 0.18 TCGA-FW-A3R5-06 12 21069001 21069001 C T SLCO1B3 Silent p.F643F 0.22 TCGA-FW-A3R5-06 12 21069026 21069026 C T SLCO1B3 Nonsense_Mutation p.Q652* 0.33 TCGA-FW-A3R5-06 12 21175852 21175852 G A SLCO1B7 Missense_Mutation p.G137R 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 21175855 21175855 G A SLCO1B7 Missense_Mutation p.E138K 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 21196326 21196326 C T SLCO1B7 Silent p.F215F 0.24 TCGA-FW-A3R5-06 12 21205029 21205029 G A SLCO1B7 Splice_Site p.X397_splice 0.24 TCGA-FW-A3R5-06 12 21205122 21205122 G A SLCO1B7 Missense_Mutation p.G428E 0.28 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 12 21294504 21294504 C T SLCO1B1 5'UTR 0.22 TCGA-FW-A3R5-06 12 21327590 21327590 C T SLCO1B1 Silent p.F102F 0.15 TCGA-FW-A3R5-06 12 21329770 21329770 C T SLCO1B1 Silent p.S140S 0.19 TCGA-FW-A3R5-06 12 21331581 21331581 G A SLCO1B1 Missense_Mutation p.E185K 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 21370127 21370127 C T SLCO1B1 Silent p.C524C 0.32 TCGA-FW-A3R5-06 12 21422680 21422680 C T SLCO1A2 Silent p.P605P 0.23 TCGA-FW-A3R5-06 12 21453372 21453372 C T SLCO1A2 Missense_Mutation p.G274R 0.19 tolerated(0.1) probably_damaging(0.955) TCGA-FW-A3R5-06 12 21459852 21459852 C T SLCO1A2 Missense_Mutation p.G136R 0.18 tolerated(0.69) benign(0.004) TCGA-FW-A3R5-06 12 21531435 21531435 C T IAPP 3'UTR 0.17 TCGA-FW-A3R5-06 12 21598304 21598304 C T PYROXD1 Silent p.F63F 0.11 TCGA-FW-A3R5-06 12 21614955 21614955 C T PYROXD1 Silent p.V298V 0.36 TCGA-FW-A3R5-06 12 21624011 21624011 A G RECQL Silent p.A563A 0.28 TCGA-FW-A3R5-06 12 21639498 21639498 G A RECQL Missense_Mutation p.P139L 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 21652496 21652496 G A RECQL Silent p.S3S 0.24 TCGA-FW-A3R5-06 12 21690081 21690081 G A GYS2 Missense_Mutation p.S640F 0.25 tolerated(0.73) benign(0.206) TCGA-FW-A3R5-06 12 21695445 21695445 C T GYS2 Missense_Mutation p.D544N 0.19 tolerated(0.32) probably_damaging(0.988) TCGA-FW-A3R5-06 12 21715852 21715852 C T GYS2 Silent p.R354R 0.12 TCGA-FW-A3R5-06 12 21727167 21727167 G A GYS2 Missense_Mutation p.P197S 0.13 tolerated(0.12) possibly_damaging(0.612) TCGA-FW-A3R5-06 12 21919003 21919003 C T KCNJ8 Missense_Mutation p.R310Q 0.21 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 12 21926377 21926377 C T KCNJ8 Silent p.Q58Q 0.34 TCGA-FW-A3R5-06 12 21954013 21954013 C T ABCC9 Missense_Mutation p.G1539R 0.22 deleterious(0.02) possibly_damaging(0.717) TCGA-FW-A3R5-06 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 21958140 21958140 G A ABCC9 Intron 0.34 TCGA-FW-A3R5-06 12 21965021 21965021 G A ABCC9 Silent p.I1391I 0.09 TCGA-FW-A3R5-06 12 21967619 21967619 G A ABCC9 Missense_Mutation p.S1354L 0.09 deleterious(0) possibly_damaging(0.89) TCGA-FW-A3R5-06 12 22025612 22025612 G A ABCC9 Silent p.L715L 0.30 TCGA-FW-A3R5-06 12 22040797 22040797 G A ABCC9 Missense_Mutation p.S625L 0.19 tolerated(0.07) benign(0.01) TCGA-FW-A3R5-06 12 22047044 22047044 A T ABCC9 Missense_Mutation p.L575Q 0.11 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 12 22061092 22061092 G A ABCC9 Silent p.V458V 0.35 TCGA-FW-A3R5-06 12 22063225 22063225 G A ABCC9 Missense_Mutation p.L396F 0.36 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 12 22089606 22089606 C T ABCC9 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 2229538 2229538 C T CACNA1C Missense_Mutation p.A140V 0.20 deleterious(0.01) probably_damaging(0.957) TCGA-FW-A3R5-06 12 22624383 22624383 G A C2CD5 Missense_Mutation p.L770F 0.34 deleterious(0) possibly_damaging(0.682) TCGA-FW-A3R5-06 12 23818459 23818459 G A SOX5 Missense_Mutation p.P284S 0.11 deleterious(0.01) probably_damaging(0.926) TCGA-FW-A3R5-06 12 24736816 24736816 G A LINC00477 RNA 0.10 TCGA-FW-A3R5-06 12 25147208 25147208 C T C12orf77 3'UTR 0.24 TCGA-FW-A3R5-06 12 25148783 25148783 T A C12orf77 Missense_Mutation p.K122I 0.32 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-FW-A3R5-06 12 25243010 25243010 C T LRMP Missense_Mutation p.S162F 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 25257389 25257389 G A LRMP Missense_Mutation p.E381K 0.14 tolerated(0.06) benign(0.446) TCGA-FW-A3R5-06 12 25260919 25260919 G A LRMP Silent p.E475E 0.21 TCGA-FW-A3R5-06 12 25261739 25261739 C T CASC1 Missense_Mutation p.E638K 0.25 tolerated(0.62) benign(0.053) TCGA-FW-A3R5-06 12 25311436 25311436 C T CASC1 Silent p.E56E 0.45 TCGA-FW-A3R5-06 12 25343562 25343562 G A CASC1 Missense_Mutation p.P3S 0.28 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 12 25679772 25679772 C T IFLTD1 Silent p.V203V 0.34 TCGA-FW-A3R5-06 12 25699359 25699359 G A IFLTD1 Missense_Mutation p.T147I 0.26 tolerated(0.27) benign(0.004) TCGA-FW-A3R5-06 12 25702421 25702421 G A IFLTD1 Missense_Mutation p.S50L 0.22 tolerated(0.21) benign(0.084) TCGA-FW-A3R5-06 12 2595295 2595295 C T CACNA1C Silent p.I261I 0.14 TCGA-FW-A3R5-06 12 2595311 2595311 C T CACNA1C Missense_Mutation p.P267S 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 2614040 2614040 G A CACNA1C Nonsense_Mutation p.W382* 0.18 TCGA-FW-A3R5-06 12 26208199 26208199 C T RASSF8 5'UTR 0.14 TCGA-FW-A3R5-06 12 26217491 26217491 C T RASSF8 Missense_Mutation p.P55L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 2622075 2622075 G T CACNA1C Missense_Mutation p.D439Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 2622120 2622120 G A CACNA1C Missense_Mutation p.E454K 0.38 tolerated(0.14) benign(0.302) TCGA-FW-A3R5-06 12 26572089 26572089 G A ITPR2 Missense_Mutation p.R2335C 0.37 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 12 2659792 2659792 G A CACNA1C Intron 0.16 TCGA-FW-A3R5-06 12 26636735 26636735 G A ITPR2 Silent p.L1970L 0.11 TCGA-FW-A3R5-06 12 26839553 26839553 G A ITPR2 Missense_Mutation p.P337S 0.17 tolerated(0.75) benign(0) TCGA-FW-A3R5-06 12 26868297 26868297 G A ITPR2 Missense_Mutation p.L264F 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 2690852 2690852 C T CACNA1C Silent p.I664I 0.31 TCGA-FW-A3R5-06 12 2705044 2705044 C T CACNA1C Missense_Mutation p.R890C 0.29 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 12 2705137 2705137 G A CACNA1C Missense_Mutation p.D921N 0.22 deleterious(0.02) possibly_damaging(0.791) TCGA-FW-A3R5-06 12 27081176 27081176 C T ASUN Silent p.T182T 0.12 TCGA-FW-A3R5-06 12 2711054 2711054 C T CACNA1C Missense_Mutation p.S983F 0.29 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 12 271138 271138 C T IQSEC3 Silent p.I830I 0.22 TCGA-FW-A3R5-06 12 2714298 2714298 G A CACNA1C Silent p.R1024R 0.15 TCGA-FW-A3R5-06 12 27143469 27143469 G A TM7SF3 Missense_Mutation p.P261L 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 12 2716282 2716282 C T CACNA1C Silent p.F1134F 0.25 TCGA-FW-A3R5-06 12 2716283 2716283 G A CACNA1C Missense_Mutation p.E1135K 0.30 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 12 2717815 2717815 C T CACNA1C Silent p.V1185V 0.23 TCGA-FW-A3R5-06 12 27235271 27235271 G A C12orf71 Missense_Mutation p.P49L 0.18 tolerated(0.21) benign(0.051) TCGA-FW-A3R5-06 12 27542960 27542960 G A ARNTL2 Intron 0.24 TCGA-FW-A3R5-06 12 27553473 27553473 G A ARNTL2 Missense_Mutation p.R309K 0.30 tolerated(0.24) benign(0.081) TCGA-FW-A3R5-06 12 2778188 2778188 G A CACNA1C Silent p.R1619R 0.34 TCGA-FW-A3R5-06 12 2786312 2786312 C T CACNA1C Silent p.Y1675Y 0.32 TCGA-FW-A3R5-06 12 2786979 2786979 G A CACNA1C Silent p.L1727L 0.26 TCGA-FW-A3R5-06 12 27872744 27872744 C T MRPS35 Missense_Mutation p.P109S 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 2795344 2795344 C T CACNA1C Missense_Mutation p.S1946F 0.29 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-FW-A3R5-06 12 280286 280286 G A IQSEC3 Missense_Mutation p.E1025K 0.19 tolerated(0.08) benign(0.027) TCGA-FW-A3R5-06 12 28116336 28116336 G A PTHLH Silent p.L157L 0.32 TCGA-FW-A3R5-06 12 28116375 28116375 G A PTHLH Missense_Mutation p.R144C 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 2936346 2936346 C T NRIP2 3'UTR 0.36 TCGA-FW-A3R5-06 12 2936434 2936434 C T NRIP2 Missense_Mutation p.R262Q 0.32 tolerated(0.12) possibly_damaging(0.678) TCGA-FW-A3R5-06 12 29650615 29650615 C T OVCH1 Missense_Mutation p.G2D 0.13 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 2983188 2983188 G A FOXM1 Missense_Mutation p.P153S 0.11 tolerated(0.17) benign(0.012) TCGA-FW-A3R5-06 12 2983282 2983282 G A FOXM1 Silent p.L121L 0.27 TCGA-FW-A3R5-06 12 3040254 3040254 C T TULP3 Silent p.L182L 0.30 TCGA-FW-A3R5-06 12 30790020 30790020 G A IPO8 Missense_Mutation p.S864L 0.33 deleterious(0) benign(0.318) TCGA-FW-A3R5-06 12 30876227 30876227 G A CAPRIN2 Missense_Mutation p.S670F 0.20 tolerated(0.06) possibly_damaging(0.632) TCGA-FW-A3R5-06 12 30881934 30881934 G A CAPRIN2 Missense_Mutation p.P477L 0.33 tolerated_low_confidence(0.07) benign(0.005) TCGA-FW-A3R5-06 12 31236828 31236828 C T DDX11 Missense_Mutation p.L76F 0.10 deleterious(0.03) probably_damaging(0.917) TCGA-FW-A3R5-06 12 31256287 31256287 C T DDX11 Missense_Mutation p.S830F 0.29 deleterious_low_confidence(0.02) benign(0.291) TCGA-FW-A3R5-06 12 313789 313789 C T SLC6A12 Missense_Mutation p.G97D 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 31850770 31850770 G A AMN1 Silent p.I146I 0.12 TCGA-FW-A3R5-06 12 318966 318966 G A SLC6A12 Missense_Mutation p.P63S 0.20 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 12 32137577 32137577 C T KIAA1551 Nonsense_Mutation p.Q1230* 0.31 TCGA-FW-A3R5-06 12 32137827 32137827 C T KIAA1551 Missense_Mutation p.S1313F 0.18 tolerated(1) benign(0) TCGA-FW-A3R5-06 12 32138307 32138307 C T KIAA1551 Missense_Mutation p.P1473L 0.30 tolerated(0.17) benign(0.054) TCGA-FW-A3R5-06 12 32760940 32760940 C T FGD4 Missense_Mutation p.P348L 0.32 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 32945323 32945323 G A PKP2 3'UTR 0.15 TCGA-FW-A3R5-06 12 32945427 32945427 C T PKP2 Splice_Site p.X860_splice 0.17 TCGA-FW-A3R5-06 12 32955366 32955366 G A PKP2 Missense_Mutation p.S757F 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 12 32975413 32975413 C T PKP2 Silent p.R653R 0.17 TCGA-FW-A3R5-06 12 32977057 32977057 C T PKP2 Missense_Mutation p.M576I 0.30 deleterious(0.02) benign(0.03) TCGA-FW-A3R5-06 12 32996178 32996178 G A PKP2 Missense_Mutation p.T483I 0.50 tolerated_low_confidence(0.4) benign(0.001) TCGA-FW-A3R5-06 12 33003898 33003898 G A PKP2 Missense_Mutation p.L394F 0.30 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 12 33030907 33030907 C T PKP2 Missense_Mutation p.E303K 0.09 tolerated(0.15) possibly_damaging(0.52) TCGA-FW-A3R5-06 12 33031217 33031217 G A PKP2 Silent p.I199I 0.25 TCGA-FW-A3R5-06 12 33031966 33031966 C T PKP2 Missense_Mutation p.G75E 0.10 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 12 333251 333251 G A SLC6A13 Silent p.Y406Y 0.24 TCGA-FW-A3R5-06 12 333603 333603 G A SLC6A13 Silent p.F379F 0.14 TCGA-FW-A3R5-06 12 33529688 33529688 C T SYT10 3'UTR 0.40 TCGA-FW-A3R5-06 12 33560122 33560122 C T SYT10 Missense_Mutation p.E227K 0.26 tolerated(0.26) benign(0.073) TCGA-FW-A3R5-06 12 33579405 33579405 G A SYT10 Silent p.V59V 0.48 TCGA-FW-A3R5-06 12 33592492 33592492 C T SYT10 5'UTR 0.25 TCGA-FW-A3R5-06 12 336757 336757 G C SLC6A13 Nonsense_Mutation p.Y303* 0.30 TCGA-FW-A3R5-06 12 336800 336800 G A SLC6A13 Missense_Mutation p.S289F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 3387589 3387589 C T TSPAN9 Silent p.L22L 0.26 TCGA-FW-A3R5-06 12 344285 344285 G A SLC6A13 Missense_Mutation p.P268S 0.19 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 12 344305 344305 C T SLC6A13 Missense_Mutation p.G261E 0.14 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 12 352969 352969 G A SLC6A13 Silent p.F71F 0.32 TCGA-FW-A3R5-06 12 3659212 3659212 C T PRMT8 Silent p.I124I 0.35 TCGA-FW-A3R5-06 12 3661925 3661925 C T PRMT8 Intron 0.44 TCGA-FW-A3R5-06 12 368900 368900 C T SLC6A13 Intron 0.39 TCGA-FW-A3R5-06 12 3757657 3757657 C T EFCAB4B Intron 0.24 TCGA-FW-A3R5-06 12 3782725 3782725 C T EFCAB4B Silent p.L186L 0.31 TCGA-FW-A3R5-06 12 3788206 3788206 G A EFCAB4B Silent p.A133A 0.13 TCGA-FW-A3R5-06 12 3806148 3806148 C T EFCAB4B Silent p.G6G 0.38 TCGA-FW-A3R5-06 12 38714175 38714175 C T ALG10B Silent p.V194V 0.13 TCGA-FW-A3R5-06 12 39064597 39064597 G A CPNE8 Silent p.V480V 0.26 TCGA-FW-A3R5-06 12 39087490 39087490 G A CPNE8 Missense_Mutation p.P371L 0.12 deleterious(0) benign(0.054) TCGA-FW-A3R5-06 12 39696876 39696876 G A KIF21A Missense_Mutation p.P1541L 0.07 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 12 39980049 39980049 G A ABCD2 Missense_Mutation p.S566L 0.39 deleterious(0.02) benign(0.013) TCGA-FW-A3R5-06 12 40020117 40020117 C T C12orf40 5'UTR 0.14 TCGA-FW-A3R5-06 12 40076552 40076552 G A C12orf40 Missense_Mutation p.E276K 0.23 tolerated(0.35) benign(0.011) TCGA-FW-A3R5-06 12 40076668 40076668 G A C12orf40 Silent p.R314R 0.23 TCGA-FW-A3R5-06 12 40114658 40114658 G A C12orf40 Missense_Mutation p.E522K 0.20 deleterious(0.02) benign(0.187) TCGA-FW-A3R5-06 12 40114687 40114687 G A C12orf40 Silent p.R531R 0.24 TCGA-FW-A3R5-06 12 40345098 40345098 A G SLC2A13 Missense_Mutation p.L332P 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 404911 404911 C T KDM5A Missense_Mutation p.R1428Q 0.31 tolerated(0.21) benign(0.058) TCGA-FW-A3R5-06 12 40677882 40677882 C T LRRK2 Missense_Mutation p.S816F 0.09 deleterious(0.01) possibly_damaging(0.495) TCGA-FW-A3R5-06 12 40689277 40689277 C T LRRK2 Missense_Mutation p.S976F 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-FW-A3R5-06 12 40689437 40689437 G A LRRK2 Silent p.Q1029Q 0.40 TCGA-FW-A3R5-06 12 40717020 40717020 C T LRRK2 Silent p.A1856A 0.26 TCGA-FW-A3R5-06 12 40728919 40728919 C T LRRK2 Silent p.L1970L 0.22 TCGA-FW-A3R5-06 12 41316121 41316121 C T CNTN1 Silent p.N97N 0.18 TCGA-FW-A3R5-06 12 41318367 41318367 C T CNTN1 Missense_Mutation p.P137S 0.33 tolerated(0.51) benign(0.021) TCGA-FW-A3R5-06 12 41318429 41318429 C T CNTN1 Silent p.L157L 0.23 TCGA-FW-A3R5-06 12 41323603 41323603 C T CNTN1 Missense_Mutation p.L168F 0.12 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 41327598 41327598 G A CNTN1 Silent p.Q301Q 0.21 TCGA-FW-A3R5-06 12 41333221 41333221 C T CNTN1 Missense_Mutation p.P438L 0.35 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 12 41419023 41419023 G A CNTN1 Silent p.S865S 0.25 TCGA-FW-A3R5-06 12 41585335 41585335 C T PDZRN4 Nonsense_Mutation p.R242* 0.26 TCGA-FW-A3R5-06 12 41900269 41900269 G A PDZRN4 Silent p.K285K 0.15 TCGA-FW-A3R5-06 12 41900474 41900474 C T PDZRN4 Missense_Mutation p.P354S 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-FW-A3R5-06 12 41949551 41949551 C T PDZRN4 Missense_Mutation p.R452W 0.14 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 12 41961632 41961632 G A PDZRN4 Silent p.E505E 0.19 TCGA-FW-A3R5-06 12 41967191 41967191 C T PDZRN4 Silent p.L870L 0.33 TCGA-FW-A3R5-06 12 41967301 41967301 G A PDZRN4 Missense_Mutation p.R907Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 12 41967584 41967584 G A PDZRN4 Silent p.K1001K 0.20 TCGA-FW-A3R5-06 12 42853634 42853634 C T PRICKLE1 Missense_Mutation p.G825S 0.19 tolerated(1) possibly_damaging(0.55) TCGA-FW-A3R5-06 12 42858582 42858582 G A PRICKLE1 Silent p.L418L 0.13 TCGA-FW-A3R5-06 12 43763125 43763125 C T ADAMTS20 Missense_Mutation p.G1836R 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 43771241 43771241 G A ADAMTS20 Missense_Mutation p.P1641L 0.12 tolerated(0.09) benign(0.029) TCGA-FW-A3R5-06 12 43771281 43771281 G A ADAMTS20 Nonsense_Mutation p.R1628* 0.22 TCGA-FW-A3R5-06 12 43777406 43777406 C T ADAMTS20 Silent p.R1584R 0.18 TCGA-FW-A3R5-06 12 43777460 43777460 C T ADAMTS20 Silent p.V1566V 0.19 TCGA-FW-A3R5-06 12 43821218 43821218 C T ADAMTS20 Missense_Mutation p.E1334K 0.31 tolerated(0.08) possibly_damaging(0.772) TCGA-FW-A3R5-06 12 43822140 43822140 C T ADAMTS20 Silent p.T1283T 0.21 TCGA-FW-A3R5-06 12 43826190 43826190 C T ADAMTS20 Missense_Mutation p.E1005K 0.41 tolerated(0.72) possibly_damaging(0.879) TCGA-FW-A3R5-06 12 43826247 43826247 C T ADAMTS20 Missense_Mutation p.E986K 0.18 tolerated(0.39) benign(0.205) TCGA-FW-A3R5-06 12 43846452 43846452 G A ADAMTS20 Nonsense_Mutation p.R603* 0.35 TCGA-FW-A3R5-06 12 43846459 43846459 C T ADAMTS20 Missense_Mutation p.M600I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 12 43847746 43847746 C T ADAMTS20 Missense_Mutation p.G575E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 43847747 43847747 C T ADAMTS20 Missense_Mutation p.G575R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 43858479 43858479 G A ADAMTS20 Missense_Mutation p.P475L 0.12 deleterious(0.04) benign(0.03) TCGA-FW-A3R5-06 12 4387925 4387925 G A CCND2 Splice_Site p.X138_splice 0.11 TCGA-FW-A3R5-06 12 43944846 43944846 C T ADAMTS20 Missense_Mutation p.V107M 0.16 deleterious(0.04) benign(0.373) TCGA-FW-A3R5-06 12 43945658 43945658 C T ADAMTS20 Missense_Mutation p.E23K 0.20 tolerated(0.17) benign(0.311) TCGA-FW-A3R5-06 12 44148716 44148716 G A PUS7L Silent p.I111I 0.28 TCGA-FW-A3R5-06 12 44191132 44191132 G A TWF1 Missense_Mutation p.H252Y 0.09 tolerated(0.12) benign(0.136) TCGA-FW-A3R5-06 12 44199727 44199727 G A TWF1 Intron 0.10 TCGA-FW-A3R5-06 12 44770423 44770423 C T TMEM117 Missense_Mutation p.P272S 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 44782277 44782277 C T TMEM117 Missense_Mutation p.S456L 0.37 tolerated_low_confidence(0.4) benign(0.001) TCGA-FW-A3R5-06 12 4479590 4479590 C T FGF23 Silent p.G225G 0.23 TCGA-FW-A3R5-06 12 4479935 4479935 C T FGF23 Silent p.P110P 0.15 TCGA-FW-A3R5-06 12 44913862 44913862 C T NELL2 Missense_Mutation p.E826K 0.21 tolerated(0.27) probably_damaging(0.988) TCGA-FW-A3R5-06 12 45059290 45059290 C T NELL2 Missense_Mutation p.R524K 0.38 tolerated(0.07) benign(0.034) TCGA-FW-A3R5-06 12 45108503 45108503 C T NELL2 Missense_Mutation p.R389Q 0.24 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 12 45409962 45409962 C T DBX2 3'UTR 0.19 TCGA-FW-A3R5-06 12 45410157 45410157 G A DBX2 Missense_Mutation p.P311L 0.31 tolerated_low_confidence(0.3) benign(0.004) TCGA-FW-A3R5-06 12 45410212 45410212 C T DBX2 Missense_Mutation p.E293K 0.30 tolerated_low_confidence(0.14) benign(0.079) TCGA-FW-A3R5-06 12 45410266 45410266 G A DBX2 Missense_Mutation p.P275S 0.30 tolerated(0.13) benign(0.014) TCGA-FW-A3R5-06 12 45410347 45410347 C T DBX2 Missense_Mutation p.E248K 0.30 deleterious(0) benign(0.339) TCGA-FW-A3R5-06 12 4543368 4543368 C T FGF6 3'UTR 0.27 TCGA-FW-A3R5-06 12 4553315 4553315 C T FGF6 Missense_Mutation p.G145E 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 45742408 45742408 C T ANO6 Silent p.L268L 0.15 TCGA-FW-A3R5-06 12 46230641 46230641 C T ARID2 Missense_Mutation p.S297F 0.33 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 46243472 46243472 C T ARID2 Nonsense_Mutation p.Q609* 0.28 TCGA-FW-A3R5-06 12 46243823 46243823 C T ARID2 Silent p.I639I 0.39 TCGA-FW-A3R5-06 12 46246393 46246393 C T ARID2 Missense_Mutation p.S1496F 0.23 deleterious_low_confidence(0.04) benign(0.352) TCGA-FW-A3R5-06 12 46598182 46598182 G A SLC38A1 Nonsense_Mutation p.Q242* 0.09 TCGA-FW-A3R5-06 12 4662197 4662197 A T RAD51AP1 Missense_Mutation p.D219V 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 12 4662198 4662198 C T RAD51AP1 Silent p.D219D 0.32 TCGA-FW-A3R5-06 12 46633526 46633526 C T SLC38A1 Missense_Mutation p.E20K 0.22 tolerated(0.09) probably_damaging(0.972) TCGA-FW-A3R5-06 12 4705365 4705365 G A DYRK4 Silent p.G111G 0.35 TCGA-FW-A3R5-06 12 4705767 4705767 G A DYRK4 Silent p.Q144Q 0.42 TCGA-FW-A3R5-06 12 47173598 47173598 C T SLC38A4 Missense_Mutation p.G208E 0.25 tolerated(0.28) benign(0.248) TCGA-FW-A3R5-06 12 4736418 4736418 G A AKAP3 Silent p.F550F 0.29 TCGA-FW-A3R5-06 12 47471412 47471412 C T AMIGO2 Silent p.R458R 0.20 TCGA-FW-A3R5-06 12 47471756 47471756 G A AMIGO2 Missense_Mutation p.H344Y 0.37 tolerated(0.71) benign(0.001) TCGA-FW-A3R5-06 12 47628806 47628806 C T PCED1B 5'UTR 0.34 TCGA-FW-A3R5-06 12 47628897 47628897 C T PCED1B Silent p.F17F 0.57 TCGA-FW-A3R5-06 12 47628967 47628967 C T PCED1B Missense_Mutation p.R41C 0.11 tolerated(1) benign(0) TCGA-FW-A3R5-06 12 47629474 47629474 G A PCED1B Missense_Mutation p.D210N 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 47630061 47630061 C T PCED1B Silent p.P405P 0.34 TCGA-FW-A3R5-06 12 4796131 4796131 C T NDUFA9 Missense_Mutation p.H331Y 0.30 tolerated(0.08) possibly_damaging(0.515) TCGA-FW-A3R5-06 12 48133933 48133933 C T RAPGEF3 Silent p.E788E 0.15 TCGA-FW-A3R5-06 12 48134385 48134386 GG A RAPGEF3 Intron 0.19 TCGA-FW-A3R5-06 12 48134543 48134543 C T RAPGEF3 Missense_Mutation p.E705K 0.23 deleterious(0) probably_damaging(0.919) TCGA-FW-A3R5-06 12 48142633 48142633 G A RAPGEF3 Missense_Mutation p.P375S 0.27 tolerated(0.81) benign(0) TCGA-FW-A3R5-06 12 48142634 48142634 G A RAPGEF3 Silent p.G374G 0.26 TCGA-FW-A3R5-06 12 48145556 48145556 G A RAPGEF3 Silent p.A110A 0.22 TCGA-FW-A3R5-06 12 48181838 48181838 G A HDAC7 Missense_Mutation p.A782V 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 48190922 48190922 G A HDAC7 Missense_Mutation p.S194F 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 48240510 48240510 G A VDR Silent p.F329F 0.29 TCGA-FW-A3R5-06 12 48240513 48240513 G A VDR Silent p.S328S 0.28 TCGA-FW-A3R5-06 12 4835838 4835838 C T GALNT8 Missense_Mutation p.L118F 0.31 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 12 4835910 4835910 G A GALNT8 Missense_Mutation p.D142N 0.29 tolerated(0.37) benign(0.015) TCGA-FW-A3R5-06 12 4835915 4835915 C T GALNT8 Silent p.L143L 0.18 TCGA-FW-A3R5-06 12 48372493 48372493 G A COL2A1 Missense_Mutation p.P928S 0.22 unknown(0) TCGA-FW-A3R5-06 12 48389692 48389692 C T COL2A1 Missense_Mutation p.G207E 0.33 unknown(0) TCGA-FW-A3R5-06 12 48391447 48391447 G A COL2A1 Missense_Mutation p.P158L 0.24 unknown(0) TCGA-FW-A3R5-06 12 48457594 48457594 G A SENP1 Missense_Mutation p.R436C 0.20 tolerated(0.05) probably_damaging(0.941) TCGA-FW-A3R5-06 12 48477508 48477508 G A SENP1 Missense_Mutation p.H140Y 0.30 deleterious(0.04) benign(0.435) TCGA-FW-A3R5-06 12 4854665 4854665 C T GALNT8 Missense_Mutation p.R311C 0.38 tolerated(0.06) benign(0.027) TCGA-FW-A3R5-06 12 48578415 48578415 G A C12orf68 Silent p.G170G 0.36 TCGA-FW-A3R5-06 12 48723446 48723446 G A H1FNT Silent p.K124K 0.38 TCGA-FW-A3R5-06 12 48723492 48723492 G A H1FNT Missense_Mutation p.G140S 0.23 tolerated(0.28) probably_damaging(0.97) TCGA-FW-A3R5-06 12 48723505 48723505 C T H1FNT Missense_Mutation p.P144L 0.29 tolerated(0.11) benign(0.011) TCGA-FW-A3R5-06 12 4872438 4872438 G A GALNT8 Missense_Mutation p.G460E 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 4873157 4873157 G A GALNT8 Missense_Mutation p.G513R 0.34 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 12 4881783 4881783 C T GALNT8 3'UTR 0.14 TCGA-FW-A3R5-06 12 48877042 48877042 C T C12orf54 5'UTR 0.19 TCGA-FW-A3R5-06 12 48884612 48884612 G A C12orf54 Silent p.R62R 0.32 TCGA-FW-A3R5-06 12 48921756 48921756 G A OR8S1 Nonsense_Mutation p.W317* 0.19 TCGA-FW-A3R5-06 12 48961662 48961662 G A LALBA 3'UTR 0.38 TCGA-FW-A3R5-06 12 48963801 48963801 C T LALBA Translation_Start_Site p.M1? 0.33 tolerated(0.05) benign(0.437) TCGA-FW-A3R5-06 12 49047785 49047785 G A KANSL2 3'UTR 0.25 TCGA-FW-A3R5-06 12 49087283 49087283 G A CCNT1 Missense_Mutation p.R572C 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 49087963 49087963 G A CCNT1 Missense_Mutation p.P345L 0.31 tolerated(0.51) benign(0.008) TCGA-FW-A3R5-06 12 49166090 49166090 G A ADCY6 Silent p.L925L 0.12 TCGA-FW-A3R5-06 12 49166321 49166321 G A ADCY6 Missense_Mutation p.S876F 0.14 tolerated(0.76) benign(0.11) TCGA-FW-A3R5-06 12 49169754 49169754 G A ADCY6 Missense_Mutation p.R600C 0.27 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 12 4919366 4919366 G A KCNA6 Silent p.E53E 0.39 TCGA-FW-A3R5-06 12 4919520 4919520 C T KCNA6 Missense_Mutation p.R105C 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 4919910 4919910 C T KCNA6 Missense_Mutation p.H235Y 0.18 tolerated(0.52) benign(0.002) TCGA-FW-A3R5-06 12 4920274 4920274 C T KCNA6 Missense_Mutation p.S356F 0.15 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 4920518 4920518 C T KCNA6 Silent p.I437I 0.25 TCGA-FW-A3R5-06 12 4920824 4920824 G A KCNA6 3'UTR 0.33 TCGA-FW-A3R5-06 12 49228277 49228277 G A DDX23 Silent p.I462I 0.40 TCGA-FW-A3R5-06 12 49259590 49259590 G A RND1 5'UTR 0.16 TCGA-FW-A3R5-06 12 49359827 49359827 G A WNT10B 3'UTR 0.35 TCGA-FW-A3R5-06 12 49359849 49359849 C T WNT10B 3'UTR 0.28 TCGA-FW-A3R5-06 12 49373260 49373260 G A WNT1 Silent p.V38V 0.28 TCGA-FW-A3R5-06 12 49390836 49390836 G A DDN Missense_Mutation p.A608V 0.24 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 12 49412666 49412666 C T PRKAG1 5'Flank 0.40 TCGA-FW-A3R5-06 12 49425842 49425842 G A KMT2D Missense_Mutation p.P4216S 0.10 unknown(0) TCGA-FW-A3R5-06 12 49427388 49427388 G A KMT2D Silent p.F3700F 0.21 TCGA-FW-A3R5-06 12 49428229 49428229 G A KMT2D Missense_Mutation p.R3491C 0.41 probably_damaging(0.988) TCGA-FW-A3R5-06 12 49433990 49433990 G A KMT2D Silent p.S2521S 0.11 TCGA-FW-A3R5-06 12 49444380 49444380 G A KMT2D Silent p.P997P 0.24 TCGA-FW-A3R5-06 12 49445109 49445109 G A KMT2D Missense_Mutation p.P786L 0.33 unknown(0) TCGA-FW-A3R5-06 12 49445619 49445619 G A KMT2D Missense_Mutation p.P616L 0.18 unknown(0) TCGA-FW-A3R5-06 12 49483723 49483723 G A DHH Silent p.L370L 0.33 TCGA-FW-A3R5-06 12 49523142 49523142 G A TUBA1B Silent p.L86L 0.31 TCGA-FW-A3R5-06 12 49579395 49579395 G A TUBA1A Silent p.L252L 0.26 TCGA-FW-A3R5-06 12 49692213 49692213 C T PRPH 3'UTR 0.23 TCGA-FW-A3R5-06 12 49724711 49724711 C T TROAP Missense_Mutation p.P695S 0.21 tolerated(0.17) benign(0.006) TCGA-FW-A3R5-06 12 49724857 49724857 C T TROAP Intron 0.25 TCGA-FW-A3R5-06 12 49724971 49724971 C A TROAP Intron 0.27 TCGA-FW-A3R5-06 12 49724972 49724972 C T TROAP Intron 0.29 TCGA-FW-A3R5-06 12 5020937 5020937 G A KCNA1 Silent p.R131R 0.36 TCGA-FW-A3R5-06 12 5021113 5021113 C T KCNA1 Missense_Mutation p.P190L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 12 5021806 5021806 G A KCNA1 Missense_Mutation p.G421E 0.29 tolerated(0.54) probably_damaging(1) TCGA-FW-A3R5-06 12 5021916 5021916 G A KCNA1 Missense_Mutation p.E458K 0.32 deleterious_low_confidence(0.05) benign(0.075) TCGA-FW-A3R5-06 12 50264264 50264264 G A FAIM2 3'UTR 0.17 TCGA-FW-A3R5-06 12 50283911 50283911 C A FAIM2 Silent p.G184G 0.10 TCGA-FW-A3R5-06 12 50295006 50295006 C T FAIM2 Missense_Mutation p.E40K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 12 50295082 50295082 C T FAIM2 Silent p.G14G 0.19 TCGA-FW-A3R5-06 12 50344655 50344655 C T AQP2 Silent p.F14F 0.37 TCGA-FW-A3R5-06 12 50366976 50366976 G A AQP6 Missense_Mutation p.G7E 0.16 tolerated_low_confidence(0.25) benign(0.006) TCGA-FW-A3R5-06 12 50366977 50366977 G A AQP6 Silent p.G7G 0.16 TCGA-FW-A3R5-06 12 50367226 50367226 C T AQP6 Silent p.L90L 0.29 TCGA-FW-A3R5-06 12 50497861 50497861 G A GPD1 Missense_Mutation p.G10S 0.20 deleterious(0.02) probably_damaging(0.974) TCGA-FW-A3R5-06 12 50500108 50500108 C T GPD1 Missense_Mutation p.S133L 0.39 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 50501529 50501529 C T GPD1 Silent p.T264T 0.09 TCGA-FW-A3R5-06 12 50503243 50503243 G A GPD1 Missense_Mutation p.E331K 0.13 tolerated(0.23) benign(0.016) TCGA-FW-A3R5-06 12 50561058 50561058 G A CERS5 Missense_Mutation p.P8L 0.35 tolerated_low_confidence(0.36) benign(0.003) TCGA-FW-A3R5-06 12 51100335 51100335 C T DIP2B Silent p.F807F 0.28 TCGA-FW-A3R5-06 12 51237684 51237684 G A TMPRSS12 Missense_Mutation p.E83K 0.50 tolerated(0.08) benign(0.418) TCGA-FW-A3R5-06 12 51442255 51442255 C T LETMD1 Missense_Mutation p.A39V 0.34 tolerated(0.13) benign(0.089) TCGA-FW-A3R5-06 12 51504689 51504689 G A TFCP2 Missense_Mutation p.P179S 0.23 deleterious(0) possibly_damaging(0.791) TCGA-FW-A3R5-06 12 51512411 51512411 G A TFCP2 Silent p.L89L 0.09 TCGA-FW-A3R5-06 12 5153839 5153839 C T KCNA5 Missense_Mutation p.L176F 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 5154105 5154105 C T KCNA5 Silent p.I264I 0.11 TCGA-FW-A3R5-06 12 51566258 51566258 G A TFCP2 5'UTR 0.28 TCGA-FW-A3R5-06 12 51685950 51685950 C T BIN2 Missense_Mutation p.E314K 0.29 tolerated(0.13) benign(0.059) TCGA-FW-A3R5-06 12 51693482 51693482 C T BIN2 Missense_Mutation p.R142Q 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 51696508 51696508 C T BIN2 Missense_Mutation p.E92K 0.27 tolerated(0.08) benign(0.024) TCGA-FW-A3R5-06 12 51696896 51696896 C T BIN2 Silent p.L64L 0.17 TCGA-FW-A3R5-06 12 51736476 51736476 G A CELA1 Missense_Mutation p.T70I 0.21 tolerated(0.1) benign(0.139) TCGA-FW-A3R5-06 12 51752006 51752006 C T GALNT6 Missense_Mutation p.E470K 0.31 tolerated(0.15) benign(0.219) TCGA-FW-A3R5-06 12 51752037 51752037 G A GALNT6 Silent p.F459F 0.28 TCGA-FW-A3R5-06 12 51753026 51753026 C T GALNT6 Missense_Mutation p.G420S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 51757907 51757907 G A GALNT6 Silent p.I349I 0.36 TCGA-FW-A3R5-06 12 51758030 51758030 G A GALNT6 Silent p.F308F 0.32 TCGA-FW-A3R5-06 12 51759245 51759245 C T GALNT6 Silent p.Q261Q 0.29 TCGA-FW-A3R5-06 12 51851266 51851266 C T SLC4A8 Missense_Mutation p.R236C 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-FW-A3R5-06 12 51852422 51852422 G A SLC4A8 Silent p.V281V 0.15 TCGA-FW-A3R5-06 12 51853778 51853778 C T SLC4A8 Missense_Mutation p.A300V 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 12 51863539 51863539 G A SLC4A8 Silent p.G497G 0.11 TCGA-FW-A3R5-06 12 51864298 51864298 C T SLC4A8 Silent p.F549F 0.19 TCGA-FW-A3R5-06 12 51887531 51887531 G A SLC4A8 Missense_Mutation p.G915E 0.16 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 12 51901268 51901268 G A SLC4A8 3'UTR 0.20 TCGA-FW-A3R5-06 12 52159647 52159647 G A SCN8A Missense_Mutation p.E913K 0.36 tolerated(0.39) benign(0.013) TCGA-FW-A3R5-06 12 52174539 52174539 G A SCN8A Missense_Mutation p.R1309Q 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 12 52200089 52200089 G A SCN8A Missense_Mutation p.E1607K 0.28 tolerated(0.17) possibly_damaging(0.528) TCGA-FW-A3R5-06 12 52200481 52200481 G A SCN8A Silent p.G1737G 0.32 TCGA-FW-A3R5-06 12 52282107 52282107 G A ANKRD33 Missense_Mutation p.R46Q 0.30 tolerated_low_confidence(0.33) benign(0.001) TCGA-FW-A3R5-06 12 52282435 52282435 G A ANKRD33 Missense_Mutation p.D77N 0.09 tolerated_low_confidence(0.06) benign(0.032) TCGA-FW-A3R5-06 12 52284387 52284387 G A ANKRD33 Silent p.V219V 0.32 TCGA-FW-A3R5-06 12 52284411 52284411 C T ANKRD33 Silent p.A227A 0.22 TCGA-FW-A3R5-06 12 52284537 52284537 C T ANKRD33 Silent p.L269L 0.24 TCGA-FW-A3R5-06 12 52284752 52284752 C T ANKRD33 Missense_Mutation p.S341F 0.26 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 12 52284753 52284753 C T ANKRD33 Silent p.S341S 0.26 TCGA-FW-A3R5-06 12 52306174 52306174 C T ACVRL1 Intron 0.32 TCGA-FW-A3R5-06 12 52306893 52306893 G A ACVRL1 Silent p.V24V 0.47 TCGA-FW-A3R5-06 12 52308303 52308303 G A ACVRL1 Missense_Mutation p.E236K 0.32 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 12 52370317 52370317 C T ACVR1B Nonsense_Mutation p.Q180* 0.12 TCGA-FW-A3R5-06 12 52451238 52451238 C T NR4A1 Silent p.A501A 0.17 TCGA-FW-A3R5-06 12 52451249 52451249 C T NR4A1 Missense_Mutation p.S505F 0.14 deleterious(0) possibly_damaging(0.773) TCGA-FW-A3R5-06 12 52565264 52565264 T G KRT80 Missense_Mutation p.K426T 0.28 tolerated(0.11) benign(0.02) TCGA-FW-A3R5-06 12 52567414 52567414 C T KRT80 Silent p.L267L 0.26 TCGA-FW-A3R5-06 12 52579321 52579321 G A KRT80 Silent p.F117F 0.13 TCGA-FW-A3R5-06 12 52636807 52636807 C T KRT7 Silent p.L290L 0.19 TCGA-FW-A3R5-06 12 52648068 52648068 C T KRT121P RNA 0.26 TCGA-FW-A3R5-06 12 52649870 52649870 G A KRT121P RNA 0.12 TCGA-FW-A3R5-06 12 52685159 52685159 G A KRT81 Missense_Mutation p.P31S 0.22 tolerated(0.2) benign(0.196) TCGA-FW-A3R5-06 12 52698736 52698736 C T KRT86 Silent p.L220L 0.19 TCGA-FW-A3R5-06 12 52699043 52699043 C T KRT86 Missense_Mutation p.S252F 0.13 deleterious(0) possibly_damaging(0.657) TCGA-FW-A3R5-06 12 52710324 52710324 G A KRT83 Silent p.T323T 0.09 TCGA-FW-A3R5-06 12 52714852 52714852 C T KRT83 Missense_Mutation p.E90K 0.23 tolerated(0.08) benign(0.135) TCGA-FW-A3R5-06 12 52754805 52754805 G A KRT85 Silent p.V452V 0.27 TCGA-FW-A3R5-06 12 52756698 52756698 G A KRT85 Silent p.I339I 0.30 TCGA-FW-A3R5-06 12 52775175 52775175 C T KRT84 Silent p.R349R 0.16 TCGA-FW-A3R5-06 12 52775247 52775247 G A KRT84 Silent p.S325S 0.35 TCGA-FW-A3R5-06 12 52790732 52790732 C T KRT82 Missense_Mutation p.E335K 0.27 deleterious(0.01) possibly_damaging(0.589) TCGA-FW-A3R5-06 12 52799986 52799986 G A KRT82 Missense_Mutation p.R26W 0.11 deleterious(0) possibly_damaging(0.609) TCGA-FW-A3R5-06 12 52822170 52822170 C T KRT75 Missense_Mutation p.E418K 0.16 tolerated(0.3) benign(0.098) TCGA-FW-A3R5-06 12 52822481 52822481 C T KRT75 Missense_Mutation p.R361Q 0.14 tolerated(0.05) probably_damaging(0.951) TCGA-FW-A3R5-06 12 52826857 52826857 C T KRT75 Silent p.R226R 0.30 TCGA-FW-A3R5-06 12 52827674 52827674 C T KRT75 Missense_Mutation p.D139N 0.34 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 52827873 52827873 G A KRT75 Silent p.S72S 0.32 TCGA-FW-A3R5-06 12 52844213 52844213 G A KRT6B Silent p.D244D 0.08 TCGA-FW-A3R5-06 12 52845656 52845656 C T KRT6B Silent p.R69R 0.25 TCGA-FW-A3R5-06 12 52862934 52862934 C T KRT6C Missense_Mutation p.G536E 0.25 tolerated(0.19) unknown(0) TCGA-FW-A3R5-06 12 52865921 52865921 G A KRT6C Silent p.I228I 0.24 TCGA-FW-A3R5-06 12 52883813 52883813 C T KRT6A Missense_Mutation p.D373N 0.28 tolerated(0.21) possibly_damaging(0.615) TCGA-FW-A3R5-06 12 52884373 52884373 C T KRT6A Missense_Mutation p.E353K 0.35 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 12 52886564 52886564 C T KRT6A Missense_Mutation p.E137K 0.25 deleterious(0) benign(0.134) TCGA-FW-A3R5-06 12 52908793 52908793 C T KRT5 Missense_Mutation p.G569E 0.35 tolerated(0.08) unknown(0) TCGA-FW-A3R5-06 12 52912727 52912727 C T KRT5 Intron 0.20 TCGA-FW-A3R5-06 12 52940209 52940209 C T KRT71 Missense_Mutation p.E396K 0.26 deleterious(0.01) possibly_damaging(0.804) TCGA-FW-A3R5-06 12 52946817 52946817 C T KRT71 Silent p.G15G 0.28 TCGA-FW-A3R5-06 12 52962009 52962009 C T KRT74 Silent p.L433L 0.31 TCGA-FW-A3R5-06 12 52965784 52965784 C T KRT74 Missense_Mutation p.E231K 0.21 deleterious(0.03) possibly_damaging(0.576) TCGA-FW-A3R5-06 12 52967192 52967192 G A KRT74 Missense_Mutation p.P124S 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-FW-A3R5-06 12 52979922 52979922 C T KRT72 Silent p.G460G 0.14 TCGA-FW-A3R5-06 12 53001898 53001898 G A KRT73 3'UTR 0.34 TCGA-FW-A3R5-06 12 53007517 53007517 G A KRT73 Silent p.I313I 0.29 TCGA-FW-A3R5-06 12 53007622 53007622 G A KRT73 Silent p.I278I 0.24 TCGA-FW-A3R5-06 12 53009975 53009975 C T KRT73 Missense_Mutation p.E213K 0.17 deleterious(0) benign(0.105) TCGA-FW-A3R5-06 12 53012211 53012211 C T KRT73 Missense_Mutation p.R33Q 0.27 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 12 53012265 53012265 C T KRT73 Missense_Mutation p.G15E 0.20 tolerated(0.27) benign(0.343) TCGA-FW-A3R5-06 12 53012266 53012266 C T KRT73 Missense_Mutation p.G15R 0.20 tolerated(0.36) benign(0.017) TCGA-FW-A3R5-06 12 53040680 53040680 G A KRT2 Missense_Mutation p.A438V 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 12 53041993 53041993 C T KRT2 Silent p.R362R 0.31 TCGA-FW-A3R5-06 12 53045554 53045554 C T KRT2 Missense_Mutation p.G125S 0.23 tolerated(0.26) unknown(0) TCGA-FW-A3R5-06 12 53045593 53045593 C T KRT2 Missense_Mutation p.G112S 0.21 tolerated(0.48) unknown(0) TCGA-FW-A3R5-06 12 53069372 53069372 C T KRT1 Missense_Mutation p.G514R 0.27 tolerated(0.09) unknown(0) TCGA-FW-A3R5-06 12 53070220 53070220 C T KRT1 Silent p.K438K 0.25 TCGA-FW-A3R5-06 12 53070861 53070861 G A KRT1 Silent p.I412I 0.45 TCGA-FW-A3R5-06 12 53072390 53072390 C T KRT1 Missense_Mutation p.D248N 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-FW-A3R5-06 12 53072446 53072446 G A KRT1 Missense_Mutation p.P229L 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 53086630 53086630 C T KRT77 Missense_Mutation p.G372E 0.24 deleterious(0.01) probably_damaging(0.934) TCGA-FW-A3R5-06 12 53096708 53096708 G A KRT77 Missense_Mutation p.L171F 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 53097069 53097069 C T KRT77 Silent p.G50G 0.30 TCGA-FW-A3R5-06 12 53165672 53165672 C T KRT76 Missense_Mutation p.E416K 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 53165751 53165751 C T KRT76 Silent p.R389R 0.35 TCGA-FW-A3R5-06 12 53170910 53170910 G A KRT76 Missense_Mutation p.R56C 0.29 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 12 53185105 53185105 C T KRT3 Missense_Mutation p.A474T 0.35 deleterious(0.01) possibly_damaging(0.836) TCGA-FW-A3R5-06 12 53201524 53201524 C T KRT4 Missense_Mutation p.R417Q 0.43 deleterious(0.05) benign(0.098) TCGA-FW-A3R5-06 12 53201637 53201637 A G KRT4 Silent p.L379L 0.10 TCGA-FW-A3R5-06 12 53207919 53207919 C T KRT4 5'UTR 0.12 TCGA-FW-A3R5-06 12 53208027 53208027 C T KRT4 5'UTR 0.32 TCGA-FW-A3R5-06 12 53215634 53215634 G A KRT79 3'UTR 0.21 TCGA-FW-A3R5-06 12 53215798 53215798 G A KRT79 Missense_Mutation p.S489F 0.16 deleterious(0) possibly_damaging(0.87) TCGA-FW-A3R5-06 12 53216853 53216853 G A KRT79 Silent p.A438A 0.29 TCGA-FW-A3R5-06 12 53223903 53223903 C T KRT79 Splice_Site p.X254_splice 0.26 TCGA-FW-A3R5-06 12 53225195 53225195 C T KRT79 Silent p.K231K 0.24 TCGA-FW-A3R5-06 12 53225270 53225270 C T KRT79 Silent p.L206L 0.23 TCGA-FW-A3R5-06 12 53227577 53227577 G A KRT79 Silent p.F156F 0.11 TCGA-FW-A3R5-06 12 53227586 53227586 G A KRT79 Silent p.F153F 0.26 TCGA-FW-A3R5-06 12 53232880 53232880 G A KRT78 3'UTR 0.21 TCGA-FW-A3R5-06 12 53232924 53232924 C T KRT78 Silent p.S512S 0.33 TCGA-FW-A3R5-06 12 53233753 53233753 C T KRT78 Missense_Mutation p.A355T 0.35 tolerated(1) benign(0.038) TCGA-FW-A3R5-06 12 53241751 53241751 C T KRT78 Missense_Mutation p.R180Q 0.11 tolerated(0.06) possibly_damaging(0.557) TCGA-FW-A3R5-06 12 53242382 53242382 C T KRT78 Silent p.E111E 0.11 TCGA-FW-A3R5-06 12 53295761 53295761 G A KRT8 Silent p.F168F 0.19 TCGA-FW-A3R5-06 12 53298740 53298740 G A KRT8 Missense_Mutation p.S37F 0.34 deleterious(0.04) benign(0.176) TCGA-FW-A3R5-06 12 53342937 53342937 C T KRT18 5'UTR 0.25 TCGA-FW-A3R5-06 12 53343040 53343040 C T KRT18 Missense_Mutation p.P28L 0.32 tolerated(0.11) benign(0.007) TCGA-FW-A3R5-06 12 53343388 53343388 G A KRT18 Intron 0.26 TCGA-FW-A3R5-06 12 53421577 53421577 C T EIF4B Missense_Mutation p.R227C 0.14 tolerated(0.09) possibly_damaging(0.689) TCGA-FW-A3R5-06 12 53459534 53459534 G A SPRYD3 3'UTR 0.23 TCGA-FW-A3R5-06 12 53461987 53461987 G A SPRYD3 Silent p.I265I 0.28 TCGA-FW-A3R5-06 12 53495988 53495988 G A IGFBP6 3'UTR 0.18 TCGA-FW-A3R5-06 12 53515095 53515095 G A SOAT2 Nonsense_Mutation p.W382* 0.34 TCGA-FW-A3R5-06 12 53515147 53515147 G A SOAT2 Missense_Mutation p.D400N 0.08 deleterious(0.01) possibly_damaging(0.903) TCGA-FW-A3R5-06 12 53516948 53516948 C T SOAT2 Silent p.F440F 0.23 TCGA-FW-A3R5-06 12 53552405 53552405 G A CSAD Missense_Mutation p.H485Y 0.24 tolerated(1) benign(0.165) TCGA-FW-A3R5-06 12 53607910 53607910 G A RARG Missense_Mutation p.P249L 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 53663157 53663157 C T ESPL1 Missense_Mutation p.A144V 0.41 deleterious(0.02) benign(0.011) TCGA-FW-A3R5-06 12 53664532 53664532 C T ESPL1 Missense_Mutation p.A440V 0.29 tolerated(0.06) benign(0.043) TCGA-FW-A3R5-06 12 53666508 53666508 C T ESPL1 Missense_Mutation p.S458F 0.24 tolerated(0.34) benign(0.03) TCGA-FW-A3R5-06 12 53671347 53671347 C T ESPL1 Missense_Mutation p.R727C 0.20 deleterious(0.03) benign(0.009) TCGA-FW-A3R5-06 12 53683068 53683068 C T ESPL1 Missense_Mutation p.H1635Y 0.06 tolerated(1) benign(0.15) TCGA-FW-A3R5-06 12 53702957 53702957 G A AAAS Missense_Mutation p.P307S 0.33 deleterious(0.02) possibly_damaging(0.721) TCGA-FW-A3R5-06 12 53708591 53708591 G A AAAS Silent p.T163T 0.27 TCGA-FW-A3R5-06 12 53723042 53723042 C T SP7 Missense_Mutation p.D62N 0.24 tolerated(0.35) probably_damaging(0.977) TCGA-FW-A3R5-06 12 53774034 53774034 C T SP1 5'UTR 0.30 TCGA-FW-A3R5-06 12 53775537 53775537 C T SP1 Silent p.A34A 0.12 TCGA-FW-A3R5-06 12 53776654 53776666 CCAGCTTGGTATC - SP1 Frame_Shift_Del p.A308Dfs*28 0.08 TCGA-FW-A3R5-06 12 53823694 53823694 G A AMHR2 Missense_Mutation p.R407Q 0.26 tolerated(1) benign(0) TCGA-FW-A3R5-06 12 53853075 53853075 C T PCBP2 Missense_Mutation p.T88I 0.24 deleterious(0.03) possibly_damaging(0.578) TCGA-FW-A3R5-06 12 53856349 53856349 C T PCBP2 Nonsense_Mutation p.Q197* 0.15 TCGA-FW-A3R5-06 12 54107574 54107574 G A CALCOCO1 Nonsense_Mutation p.R568* 0.07 TCGA-FW-A3R5-06 12 54379110 54379110 G A HOXC10 Missense_Mutation p.E23K 0.31 deleterious(0.03) benign(0.125) TCGA-FW-A3R5-06 12 54379177 54379177 G A HOXC10 Missense_Mutation p.R45K 0.16 tolerated(0.16) benign(0.056) TCGA-FW-A3R5-06 12 54405148 54405148 G A HOXC8 Missense_Mutation p.E238K 0.26 tolerated_low_confidence(0.08) unknown(0) TCGA-FW-A3R5-06 12 54422220 54422220 C T HOXC6 5'UTR 0.31 TCGA-FW-A3R5-06 12 54423774 54423774 C T HOXC6 3'UTR 0.50 TCGA-FW-A3R5-06 12 54423775 54423775 C T HOXC6 3'UTR 0.50 TCGA-FW-A3R5-06 12 54448070 54448070 C T HOXC4 Missense_Mutation p.P122S 0.26 tolerated(0.66) benign(0.004) TCGA-FW-A3R5-06 12 54448806 54448806 C T HOXC4 Silent p.F204F 0.39 TCGA-FW-A3R5-06 12 54686601 54686601 C T NFE2 Missense_Mutation p.E227K 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-FW-A3R5-06 12 54686769 54686769 C T NFE2 Missense_Mutation p.E171K 0.13 tolerated(0.1) benign(0.18) TCGA-FW-A3R5-06 12 54756288 54756288 G A GPR84 3'UTR 0.29 TCGA-FW-A3R5-06 12 54756536 54756536 G T GPR84 Missense_Mutation p.P367H 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 54791248 54791248 G A ITGA5 Silent p.T989T 0.22 TCGA-FW-A3R5-06 12 54792418 54792418 C T ITGA5 Missense_Mutation p.R969Q 0.24 tolerated(0.09) benign(0.003) TCGA-FW-A3R5-06 12 54793667 54793667 G A ITGA5 Missense_Mutation p.S903F 0.24 deleterious(0.04) possibly_damaging(0.748) TCGA-FW-A3R5-06 12 54797988 54797988 G A ITGA5 Silent p.F502F 0.16 TCGA-FW-A3R5-06 12 54798615 54798615 C T ITGA5 Missense_Mutation p.G430E 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 54805731 54805731 C T ITGA5 Missense_Mutation p.G79E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 54893190 54893190 G A NCKAP1L Missense_Mutation p.E52K 0.31 deleterious(0) possibly_damaging(0.514) TCGA-FW-A3R5-06 12 54894327 54894327 G A NCKAP1L Missense_Mutation p.G75E 0.28 tolerated(1) benign(0.405) TCGA-FW-A3R5-06 12 54894350 54894350 G A NCKAP1L Missense_Mutation p.E83K 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-FW-A3R5-06 12 54901636 54901636 G A NCKAP1L Splice_Site p.X103_splice 0.23 TCGA-FW-A3R5-06 12 54902260 54902260 C T NCKAP1L Missense_Mutation p.R151W 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 54903535 54903535 C T NCKAP1L Missense_Mutation p.H197Y 0.10 deleterious(0.01) probably_damaging(0.944) TCGA-FW-A3R5-06 12 54903692 54903692 G A NCKAP1L Missense_Mutation p.E220K 0.35 deleterious(0.02) benign(0.349) TCGA-FW-A3R5-06 12 54905628 54905628 G A NCKAP1L Nonsense_Mutation p.W259* 0.34 TCGA-FW-A3R5-06 12 54913107 54913107 C T NCKAP1L Missense_Mutation p.S539F 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 54914924 54914924 G A NCKAP1L Missense_Mutation p.G594S 0.10 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 12 54925084 54925084 G A NCKAP1L Missense_Mutation p.M849I 0.08 tolerated(0.23) benign(0.074) TCGA-FW-A3R5-06 12 54925570 54925570 C T NCKAP1L Silent p.I914I 0.28 TCGA-FW-A3R5-06 12 54943668 54943668 C T PDE1B Silent p.S4S 0.25 TCGA-FW-A3R5-06 12 54967229 54967229 G A PDE1B Missense_Mutation p.M309I 0.18 tolerated(0.05) benign(0.258) TCGA-FW-A3R5-06 12 54971043 54971043 C T PDE1B Silent p.S514S 0.19 TCGA-FW-A3R5-06 12 54971065 54971065 C T PDE1B Missense_Mutation p.P522S 0.33 tolerated(0.61) benign(0) TCGA-FW-A3R5-06 12 54971195 54971195 C T PPP1R1A 3'Flank 0.29 TCGA-FW-A3R5-06 12 54976578 54976578 G A PPP1R1A Missense_Mutation p.S62F 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 12 549866 549866 C T CCDC77 Silent p.A375A 0.22 TCGA-FW-A3R5-06 12 550076 550076 C T CCDC77 Nonsense_Mutation p.R412* 0.20 TCGA-FW-A3R5-06 12 55025539 55025539 C T LACRT Missense_Mutation p.G113E 0.26 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FW-A3R5-06 12 55038536 55038536 G A DCD Silent p.A98A 0.32 TCGA-FW-A3R5-06 12 55039011 55039011 C T DCD Missense_Mutation p.G79R 0.27 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FW-A3R5-06 12 55356487 55356487 C T TESPA1 Missense_Mutation p.D399N 0.21 tolerated_low_confidence(0.22) benign(0.009) TCGA-FW-A3R5-06 12 55368262 55368262 G A TESPA1 Silent p.L29L 0.35 TCGA-FW-A3R5-06 12 55420360 55420360 G A NEUROD4 Missense_Mutation p.S46N 0.27 tolerated(0.28) benign(0.001) TCGA-FW-A3R5-06 12 55420389 55420389 G A NEUROD4 Missense_Mutation p.E56K 0.25 tolerated(0.18) possibly_damaging(0.678) TCGA-FW-A3R5-06 12 55420437 55420437 C T NEUROD4 Missense_Mutation p.P72S 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 12 55420498 55420498 C T NEUROD4 Missense_Mutation p.A92V 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 55420762 55420762 C T NEUROD4 Missense_Mutation p.S180F 0.27 deleterious(0.02) possibly_damaging(0.639) TCGA-FW-A3R5-06 12 55420887 55420887 C T NEUROD4 Missense_Mutation p.L222F 0.28 tolerated(0.58) benign(0.045) TCGA-FW-A3R5-06 12 55421032 55421032 C T NEUROD4 Missense_Mutation p.S270F 0.22 deleterious(0) probably_damaging(0.914) TCGA-FW-A3R5-06 12 55421210 55421210 C T NEUROD4 Silent p.F329F 0.35 TCGA-FW-A3R5-06 12 55523928 55523928 C T OR9K2 Missense_Mutation p.L126F 0.10 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 12 55614818 55614818 G A OR10A7 Missense_Mutation p.E4K 0.14 tolerated(0.22) benign(0.025) TCGA-FW-A3R5-06 12 55614869 55614869 C T OR10A7 Missense_Mutation p.P21S 0.12 tolerated(0.07) benign(0.037) TCGA-FW-A3R5-06 12 55615680 55615680 G A OR10A7 Missense_Mutation p.G291D 0.30 deleterious(0) benign(0.033) TCGA-FW-A3R5-06 12 55641666 55641666 C T OR6C74 Missense_Mutation p.L199F 0.26 tolerated_low_confidence(0.4) benign(0.01) TCGA-FW-A3R5-06 12 55688082 55688082 C T OR6C6 Missense_Mutation p.R312K 0.38 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 12 55688681 55688681 G A OR6C6 Silent p.L112L 0.34 TCGA-FW-A3R5-06 12 55714563 55714563 C T OR6C1 Silent p.F60F 0.31 TCGA-FW-A3R5-06 12 55726102 55726102 C T OR6C3 Silent p.F206F 0.22 TCGA-FW-A3R5-06 12 55758950 55758950 C T OR6C75 Missense_Mutation p.P19L 0.23 deleterious_low_confidence(0.01) benign(0.002) TCGA-FW-A3R5-06 12 55759599 55759599 C G OR6C75 Silent p.A235A 0.33 TCGA-FW-A3R5-06 12 55794837 55794837 C T OR6C65 Silent p.F175F 0.21 TCGA-FW-A3R5-06 12 55820223 55820223 G A OR6C76 Silent p.R62R 0.27 TCGA-FW-A3R5-06 12 55820243 55820243 C T OR6C76 Missense_Mutation p.S69L 0.19 tolerated_low_confidence(0.11) benign(0.021) TCGA-FW-A3R5-06 12 55863470 55863470 G A OR6C70 Silent p.F151F 0.29 TCGA-FW-A3R5-06 12 55945863 55945863 C T OR6C4 Missense_Mutation p.P285S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 12 56030715 56030715 C T OR10P1 Missense_Mutation p.L14F 0.30 tolerated(0.09) benign(0.416) TCGA-FW-A3R5-06 12 56031306 56031306 C T OR10P1 Missense_Mutation p.P211S 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 56031521 56031521 C T OR10P1 Silent p.I282I 0.20 TCGA-FW-A3R5-06 12 5603410 5603410 C T NTF3 Silent p.L23L 0.25 TCGA-FW-A3R5-06 12 5603722 5603722 C T NTF3 Silent p.P127P 0.22 TCGA-FW-A3R5-06 12 5603770 5603770 G A NTF3 Silent p.A143A 0.19 TCGA-FW-A3R5-06 12 5603793 5603793 G A NTF3 Missense_Mutation p.R151Q 0.32 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 12 56075728 56075728 G A METTL7B Missense_Mutation p.G64R 0.25 tolerated(0.21) benign(0.002) TCGA-FW-A3R5-06 12 56081758 56081758 C T ITGA7 Nonsense_Mutation p.W1064* 0.24 TCGA-FW-A3R5-06 12 56088753 56088753 C T ITGA7 Missense_Mutation p.D673N 0.30 tolerated(0.15) possibly_damaging(0.549) TCGA-FW-A3R5-06 12 56089407 56089407 C A ITGA7 Missense_Mutation p.K638N 0.27 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 12 56090698 56090698 G A ITGA7 Silent p.A578A 0.23 TCGA-FW-A3R5-06 12 56092314 56092314 C T ITGA7 Missense_Mutation p.E353K 0.35 tolerated(0.75) benign(0.067) TCGA-FW-A3R5-06 12 56096685 56096685 G A ITGA7 Missense_Mutation p.R129W 0.15 deleterious(0) possibly_damaging(0.742) TCGA-FW-A3R5-06 12 56121019 56121019 G A CD63 Silent p.I57I 0.21 TCGA-FW-A3R5-06 12 56137461 56137461 G A GDF11 Missense_Mutation p.G121S 0.43 tolerated(0.24) possibly_damaging(0.516) TCGA-FW-A3R5-06 12 56235010 56235010 C T MMP19 Missense_Mutation p.E62K 0.28 tolerated(1) possibly_damaging(0.755) TCGA-FW-A3R5-06 12 56235011 56235011 C T MMP19 Silent p.Q61Q 0.28 TCGA-FW-A3R5-06 12 56236591 56236591 C T MMP19 Silent p.L8L 0.20 TCGA-FW-A3R5-06 12 56295662 56295662 G A WIBG Silent p.G203G 0.24 TCGA-FW-A3R5-06 12 56334725 56334725 C T DGKA Silent p.T354T 0.17 TCGA-FW-A3R5-06 12 56345462 56345462 G A DGKA Silent p.V494V 0.09 TCGA-FW-A3R5-06 12 56396389 56396389 C T SUOX Missense_Mutation p.P38L 0.28 tolerated_low_confidence(0.76) benign(0.001) TCGA-FW-A3R5-06 12 56417497 56417497 C T IKZF4 Missense_Mutation p.P44S 0.25 tolerated_low_confidence(0.52) benign(0) TCGA-FW-A3R5-06 12 56504236 56504236 T C PA2G4 Missense_Mutation p.V228A 0.36 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 12 56504387 56504387 C T PA2G4 Silent p.P251P 0.29 TCGA-FW-A3R5-06 12 56524877 56524877 C T ESYT1 Silent p.I207I 0.10 TCGA-FW-A3R5-06 12 56525338 56525338 C T ESYT1 Silent p.F264F 0.26 TCGA-FW-A3R5-06 12 56531834 56531834 C T ESYT1 Silent p.V751V 0.15 TCGA-FW-A3R5-06 12 56574793 56574793 G A SMARCC2 Missense_Mutation p.P350L 0.14 deleterious(0.03) possibly_damaging(0.713) TCGA-FW-A3R5-06 12 56638911 56638911 G A ANKRD52 Missense_Mutation p.P823L 0.07 tolerated(0.15) benign(0.015) TCGA-FW-A3R5-06 12 56638912 56638912 G A ANKRD52 Missense_Mutation p.P823S 0.06 tolerated(0.73) benign(0.021) TCGA-FW-A3R5-06 12 56639294 56639294 G A ANKRD52 Silent p.P757P 0.32 TCGA-FW-A3R5-06 12 56646657 56646657 G A ANKRD52 Missense_Mutation p.S403L 0.32 tolerated(0.26) benign(0.001) TCGA-FW-A3R5-06 12 56650809 56650809 G A ANKRD52 Missense_Mutation p.S84F 0.10 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 12 56712110 56712110 G A PAN2 Missense_Mutation p.S1162F 0.19 tolerated(0.08) benign(0.232) TCGA-FW-A3R5-06 12 5672668 5672668 C T ANO2 Missense_Mutation p.D932N 0.15 tolerated(0.07) benign(0.219) TCGA-FW-A3R5-06 12 56733246 56733246 G A IL23A Missense_Mutation p.D67N 0.22 tolerated(0.36) benign(0.055) TCGA-FW-A3R5-06 12 56737280 56737280 G A STAT2 Missense_Mutation p.P817S 0.37 tolerated_low_confidence(0.07) benign(0.345) TCGA-FW-A3R5-06 12 56742738 56742738 G A STAT2 Nonsense_Mutation p.Q516* 0.19 TCGA-FW-A3R5-06 12 56742819 56742819 G A STAT2 Missense_Mutation p.P489S 0.24 tolerated(0.05) possibly_damaging(0.639) TCGA-FW-A3R5-06 12 5674779 5674779 G A ANO2 Missense_Mutation p.S891L 0.33 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 56755842 56755842 G A APOF Missense_Mutation p.P50S 0.16 tolerated(0.08) benign(0.21) TCGA-FW-A3R5-06 12 56822682 56822682 G A TIMELESS Missense_Mutation p.A430V 0.38 tolerated(0.5) benign(0.001) TCGA-FW-A3R5-06 12 56845014 56845014 C T MIP 3'UTR 0.21 TCGA-FW-A3R5-06 12 56847402 56847402 G A MIP Silent p.F166F 0.29 TCGA-FW-A3R5-06 12 56847477 56847477 G A MIP Silent p.F141F 0.41 TCGA-FW-A3R5-06 12 56868895 56868895 C T GLS2 Splice_Site p.X310_splice 0.34 TCGA-FW-A3R5-06 12 5687648 5687648 G A ANO2 Missense_Mutation p.S757F 0.14 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 12 57005376 57005376 G A BAZ2A Missense_Mutation p.R553C 0.28 tolerated(0.11) possibly_damaging(0.888) TCGA-FW-A3R5-06 12 57032176 57032176 G A ATP5B Silent p.F507F 0.35 TCGA-FW-A3R5-06 12 57032929 57032929 G A ATP5B Silent p.L484L 0.39 TCGA-FW-A3R5-06 12 5708755 5708755 C T ANO2 Missense_Mutation p.E710K 0.30 tolerated(0.26) benign(0.399) TCGA-FW-A3R5-06 12 57112020 57112020 G A NACA Intron 0.28 TCGA-FW-A3R5-06 12 57112534 57112534 G A NACA Intron 0.31 TCGA-FW-A3R5-06 12 57112535 57112535 G A NACA Intron 0.33 TCGA-FW-A3R5-06 12 57112813 57112813 G A NACA Intron 0.18 TCGA-FW-A3R5-06 12 57113848 57113848 G A NACA Missense_Mutation p.A489V 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.682) TCGA-FW-A3R5-06 12 5724456 5724456 C T ANO2 Silent p.P608P 0.24 TCGA-FW-A3R5-06 12 57324024 57324024 G A SDR9C7 Silent p.F182F 0.28 TCGA-FW-A3R5-06 12 57345840 57345840 G A RDH16 Silent p.V309V 0.24 TCGA-FW-A3R5-06 12 57348915 57348915 G A RDH16 Missense_Mutation p.S116F 0.42 tolerated(0.52) benign(0.013) TCGA-FW-A3R5-06 12 57409509 57409509 C T TAC3 Missense_Mutation p.E25K 0.21 tolerated(0.07) probably_damaging(0.989) TCGA-FW-A3R5-06 12 57423014 57423014 G A MYO1A Silent p.F969F 0.32 TCGA-FW-A3R5-06 12 57430866 57430866 G A MYO1A Missense_Mutation p.L689F 0.20 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 12 57432321 57432321 G A MYO1A Silent p.S545S 0.21 TCGA-FW-A3R5-06 12 57437680 57437680 C T MYO1A Silent p.Q284Q 0.29 TCGA-FW-A3R5-06 12 57437748 57437748 G A MYO1A Nonsense_Mutation p.R262* 0.31 TCGA-FW-A3R5-06 12 5744379 5744379 G A ANO2 Silent p.L585L 0.21 TCGA-FW-A3R5-06 12 57453726 57453726 G A TMEM194A Missense_Mutation p.S424F 0.35 tolerated(0.06) benign(0) TCGA-FW-A3R5-06 12 57496103 57496103 G A STAT6 Silent p.H494H 0.29 TCGA-FW-A3R5-06 12 57535160 57535160 C T LRP1 Missense_Mutation p.P65L 0.25 benign(0.079) TCGA-FW-A3R5-06 12 57553764 57553764 C T LRP1 Missense_Mutation p.A652V 0.22 possibly_damaging(0.617) TCGA-FW-A3R5-06 12 57569316 57569316 C T LRP1 Silent p.S1207S 0.26 TCGA-FW-A3R5-06 12 57587458 57587458 C T LRP1 Silent p.I2598I 0.16 TCGA-FW-A3R5-06 12 57596994 57596994 C T LRP1 Missense_Mutation p.S3581F 0.37 possibly_damaging(0.878) TCGA-FW-A3R5-06 12 57597283 57597283 G A LRP1 Missense_Mutation p.E3644K 0.36 possibly_damaging(0.864) TCGA-FW-A3R5-06 12 57598915 57598915 C T LRP1 Missense_Mutation p.H3740Y 0.24 benign(0.036) TCGA-FW-A3R5-06 12 57619175 57619175 C T NXPH4 Missense_Mutation p.P191L 0.35 deleterious_low_confidence(0.03) benign(0.011) TCGA-FW-A3R5-06 12 57619434 57619434 C T NXPH4 Silent p.I277I 0.18 TCGA-FW-A3R5-06 12 57619443 57619443 C T NXPH4 Silent p.F280F 0.18 TCGA-FW-A3R5-06 12 57642935 57642935 C T STAC3 Missense_Mutation p.E75K 0.31 tolerated(0.26) benign(0.007) TCGA-FW-A3R5-06 12 57643365 57643365 G A STAC3 Missense_Mutation p.R19W 0.28 deleterious(0.02) benign(0.04) TCGA-FW-A3R5-06 12 57828693 57828693 C T INHBC Silent p.A8A 0.12 TCGA-FW-A3R5-06 12 57828873 57828873 C T INHBC Silent p.S68S 0.13 TCGA-FW-A3R5-06 12 57843461 57843461 G A INHBC Missense_Mutation p.D239N 0.38 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 12 57843625 57843625 C T INHBC Silent p.S293S 0.08 TCGA-FW-A3R5-06 12 57849343 57849343 C T INHBE Silent p.L8L 0.16 TCGA-FW-A3R5-06 12 57859574 57859574 C T GLI1 Missense_Mutation p.P210S 0.27 tolerated(0.05) benign(0.003) TCGA-FW-A3R5-06 12 57863320 57863320 G A GLI1 Missense_Mutation p.G472E 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 57864435 57864435 A G GLI1 Missense_Mutation p.R638G 0.26 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 12 57865164 57865164 C T GLI1 Silent p.L881L 0.12 TCGA-FW-A3R5-06 12 57865728 57865728 G A GLI1 Missense_Mutation p.G1069S 0.07 tolerated_low_confidence(0.77) benign(0.002) TCGA-FW-A3R5-06 12 57865804 57865804 C T GLI1 Missense_Mutation p.S1094F 0.23 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 57868667 57868667 C T ARHGAP9 Missense_Mutation p.D548N 0.21 tolerated(0.07) probably_damaging(0.983) TCGA-FW-A3R5-06 12 57871033 57871033 C T ARHGAP9 Missense_Mutation p.G259E 0.12 tolerated(0.25) benign(0.016) TCGA-FW-A3R5-06 12 57872937 57872937 C T ARHGAP9 Missense_Mutation p.E85K 0.08 deleterious(0) possibly_damaging(0.547) TCGA-FW-A3R5-06 12 57881765 57881765 G A MARS 5'UTR 0.10 TCGA-FW-A3R5-06 12 57881788 57881788 C T MARS 5'UTR 0.25 TCGA-FW-A3R5-06 12 57883740 57883740 C T MARS Missense_Mutation p.P159L 0.21 tolerated(0.17) benign(0.002) TCGA-FW-A3R5-06 12 57944033 57944033 C T KIF5A 5'UTR 0.35 TCGA-FW-A3R5-06 12 57963926 57963926 A T KIF5A Missense_Mutation p.Y425F 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 12 58000277 58000277 C T DTX3 5'UTR 0.28 TCGA-FW-A3R5-06 12 58000757 58000757 G A DTX3 Silent p.L37L 0.12 TCGA-FW-A3R5-06 12 58002957 58002957 C T DTX3 3'UTR 0.38 TCGA-FW-A3R5-06 12 58002958 58002958 C T DTX3 3'UTR 0.36 TCGA-FW-A3R5-06 12 58014179 58014179 C T SLC26A10 Missense_Mutation p.S59F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 58125397 58125397 C T AGAP2 Missense_Mutation p.R661Q 0.09 tolerated(0.07) probably_damaging(0.962) TCGA-FW-A3R5-06 12 58131029 58131029 C T AGAP2 Missense_Mutation p.G334E 0.21 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-FW-A3R5-06 12 58135860 58135860 C T AGAP2 5'Flank 0.25 TCGA-FW-A3R5-06 12 58163367 58163367 G A METTL1 Missense_Mutation p.A185V 0.31 deleterious(0) possibly_damaging(0.902) TCGA-FW-A3R5-06 12 58196037 58196037 C T AVIL Missense_Mutation p.R686Q 0.43 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 58197165 58197165 C T AVIL Silent p.Q609Q 0.35 TCGA-FW-A3R5-06 12 5841704 5841704 C T ANO2 Silent p.T509T 0.26 TCGA-FW-A3R5-06 12 5860039 5860039 G A ANO2 Missense_Mutation p.L381F 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 12 59271314 59271314 C T LRIG3 Missense_Mutation p.D802N 0.35 deleterious(0.02) benign(0.008) TCGA-FW-A3R5-06 12 59272864 59272864 G A LRIG3 Missense_Mutation p.P609S 0.41 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 5941682 5941682 G A ANO2 Missense_Mutation p.P237S 0.28 tolerated(0.09) probably_damaging(0.969) TCGA-FW-A3R5-06 12 60165033 60165033 G A SLC16A7 Missense_Mutation p.G84D 0.12 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 6030491 6030491 C T ANO2 Silent p.L79L 0.19 TCGA-FW-A3R5-06 12 6031893 6031893 C T ANO2 Missense_Mutation p.G30R 0.24 deleterious_low_confidence(0.01) benign(0.431) TCGA-FW-A3R5-06 12 6058963 6058963 G A VWF Missense_Mutation p.H2748Y 0.21 tolerated(0.08) benign(0.403) TCGA-FW-A3R5-06 12 6078444 6078444 G A VWF Silent p.V2554V 0.20 TCGA-FW-A3R5-06 12 6125769 6125769 C T VWF Missense_Mutation p.D1742N 0.38 deleterious(0.01) probably_damaging(0.945) TCGA-FW-A3R5-06 12 6125817 6125817 G A VWF Missense_Mutation p.R1726C 0.23 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 12 6128044 6128044 A G VWF Missense_Mutation p.F1514L 0.15 deleterious(0) possibly_damaging(0.796) TCGA-FW-A3R5-06 12 6128444 6128444 G A VWF Silent p.I1380I 0.20 TCGA-FW-A3R5-06 12 6128845 6128845 G A VWF Missense_Mutation p.P1247S 0.35 tolerated(0.07) possibly_damaging(0.857) TCGA-FW-A3R5-06 12 6167147 6167147 C T VWF Missense_Mutation p.D533N 0.29 tolerated(0.16) possibly_damaging(0.861) TCGA-FW-A3R5-06 12 6180466 6180466 G A VWF Missense_Mutation p.P385S 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-FW-A3R5-06 12 6181520 6181520 G A VWF Silent p.S362S 0.28 TCGA-FW-A3R5-06 12 6184597 6184597 C T VWF Missense_Mutation p.G260R 0.12 tolerated(0.09) probably_damaging(0.981) TCGA-FW-A3R5-06 12 62104181 62104181 C T FAM19A2 3'UTR 0.26 TCGA-FW-A3R5-06 12 62798036 62798036 C T USP15 Missense_Mutation p.P943S 0.19 tolerated(0.19) benign(0.003) TCGA-FW-A3R5-06 12 62943454 62943454 C A MON2 Silent p.S920S 0.12 TCGA-FW-A3R5-06 12 62954404 62954404 C T MON2 Silent p.D1181D 0.36 TCGA-FW-A3R5-06 12 63541245 63541245 C T AVPR1A Missense_Mutation p.R384K 0.16 tolerated(0.26) benign(0.015) TCGA-FW-A3R5-06 12 63963095 63963095 G A DPY19L2 Nonsense_Mutation p.R679* 0.22 TCGA-FW-A3R5-06 12 63974589 63974589 G A DPY19L2 Missense_Mutation p.R585C 0.17 deleterious(0.01) benign(0.035) TCGA-FW-A3R5-06 12 64173857 64173857 C T TMEM5 Silent p.S39S 0.26 TCGA-FW-A3R5-06 12 64202844 64202844 G A TMEM5 Missense_Mutation p.S435N 0.18 tolerated(0.5) benign(0.004) TCGA-FW-A3R5-06 12 6422854 6422854 C T PLEKHG6 Silent p.A66A 0.31 TCGA-FW-A3R5-06 12 6422908 6422908 G A PLEKHG6 Silent p.G84G 0.09 TCGA-FW-A3R5-06 12 6428018 6428018 C T PLEKHG6 Silent p.L461L 0.19 TCGA-FW-A3R5-06 12 6435711 6435711 G A PLEKHG6 Missense_Mutation p.E548K 0.21 deleterious(0.01) benign(0.424) TCGA-FW-A3R5-06 12 6439002 6439002 G A TNFRSF1A Silent p.P333P 0.45 TCGA-FW-A3R5-06 12 6440044 6440044 C T TNFRSF1A Silent p.E200E 0.25 TCGA-FW-A3R5-06 12 6442295 6442295 G A TNFRSF1A Missense_Mutation p.T164I 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 6457306 6457306 G A SCNN1A Silent p.F640F 0.37 TCGA-FW-A3R5-06 12 6458118 6458118 C T SCNN1A Silent p.K576K 0.28 TCGA-FW-A3R5-06 12 64668681 64668681 G A C12orf56 Silent p.I368I 0.26 TCGA-FW-A3R5-06 12 64668705 64668705 G A C12orf56 Silent p.S360S 0.21 TCGA-FW-A3R5-06 12 6472692 6472692 G A SCNN1A Missense_Mutation p.R260C 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-FW-A3R5-06 12 64746706 64746706 G A C12orf56 Missense_Mutation p.P128L 0.26 tolerated_low_confidence(1) probably_damaging(0.999) TCGA-FW-A3R5-06 12 64746713 64746713 G A C12orf56 Silent p.L126L 0.09 TCGA-FW-A3R5-06 12 6483644 6483644 G A SCNN1A Silent p.F161F 0.11 TCGA-FW-A3R5-06 12 64854024 64854024 C T TBK1 Missense_Mutation p.P48L 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 6500152 6500152 C T LTBR 3'UTR 0.30 TCGA-FW-A3R5-06 12 6554368 6554368 G A CD27 Missense_Mutation p.G36E 0.20 tolerated(0.3) benign(0.04) TCGA-FW-A3R5-06 12 6554699 6554699 G A CD27 Silent p.E82E 0.12 TCGA-FW-A3R5-06 12 657217 657217 C T B4GALNT3 Silent p.F245F 0.36 TCGA-FW-A3R5-06 12 65847522 65847522 C T MSRB3 Missense_Mutation p.H110Y 0.30 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 12 65857063 65857063 G A MSRB3 Silent p.G180G 0.25 TCGA-FW-A3R5-06 12 6601548 6601548 G A MRPL51 Silent p.I92I 0.24 TCGA-FW-A3R5-06 12 6601615 6601615 G A MRPL51 Missense_Mutation p.P70L 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 12 6623959 6623959 C T NCAPD2 Missense_Mutation p.P287L 0.26 tolerated(0.07) benign(0.078) TCGA-FW-A3R5-06 12 662562 662562 C T B4GALNT3 Silent p.S491S 0.09 TCGA-FW-A3R5-06 12 6635479 6635479 C T NCAPD2 Silent p.P836P 0.31 TCGA-FW-A3R5-06 12 666022 666022 C T B4GALNT3 Silent p.F790F 0.19 TCGA-FW-A3R5-06 12 66611005 66611005 G A IRAK3 Missense_Mutation p.V215I 0.20 tolerated(0.2) benign(0.143) TCGA-FW-A3R5-06 12 66641931 66641931 G A IRAK3 Missense_Mutation p.E591K 0.32 deleterious_low_confidence(0.04) benign(0.129) TCGA-FW-A3R5-06 12 66859118 66859118 G A GRIP1 Missense_Mutation p.S270L 0.33 tolerated(0.14) benign(0.394) TCGA-FW-A3R5-06 12 6692287 6692287 G A CHD4 Intron 0.09 TCGA-FW-A3R5-06 12 670560 670560 C T B4GALNT3 Silent p.F980F 0.18 TCGA-FW-A3R5-06 12 6729468 6729468 C T LPAR5 Missense_Mutation p.R316Q 0.31 tolerated(0.27) benign(0.001) TCGA-FW-A3R5-06 12 6730144 6730144 C T LPAR5 Missense_Mutation p.D91N 0.20 tolerated(0.46) benign(0.007) TCGA-FW-A3R5-06 12 6730183 6730183 G A LPAR5 Missense_Mutation p.R78C 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 6730251 6730251 G A LPAR5 Missense_Mutation p.S55L 0.14 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 12 6747434 6747434 G A ACRBP 3'UTR 0.37 TCGA-FW-A3R5-06 12 6748162 6748162 G A ACRBP Silent p.S489S 0.08 TCGA-FW-A3R5-06 12 6749241 6749241 C T ACRBP Silent p.G470G 0.20 TCGA-FW-A3R5-06 12 6749668 6749668 C T ACRBP Silent p.R366R 0.22 TCGA-FW-A3R5-06 12 6752821 6752821 G A ACRBP Missense_Mutation p.H321Y 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-FW-A3R5-06 12 6752834 6752834 G A ACRBP Silent p.L316L 0.23 TCGA-FW-A3R5-06 12 6756023 6756023 C T ACRBP Missense_Mutation p.G67S 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 6761495 6761495 G A ING4 Missense_Mutation p.T197I 0.25 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 12 67691229 67691229 C T CAND1 Silent p.T178T 0.28 TCGA-FW-A3R5-06 12 67703945 67703945 C T CAND1 Missense_Mutation p.P1070L 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 6781694 6781694 G A ZNF384 Missense_Mutation p.H306Y 0.32 deleterious(0.02) benign(0.415) TCGA-FW-A3R5-06 12 68552030 68552030 G A IFNG Missense_Mutation p.H42Y 0.30 tolerated(0.07) benign(0.013) TCGA-FW-A3R5-06 12 68595531 68595531 A T IL26 3'UTR 0.50 TCGA-FW-A3R5-06 12 68619245 68619245 C T IL26 Silent p.K69K 0.20 TCGA-FW-A3R5-06 12 68619438 68619438 G T IL26 Nonsense_Mutation p.Y33* 0.09 TCGA-FW-A3R5-06 12 6881920 6881920 C T LAG3 5'UTR 0.33 TCGA-FW-A3R5-06 12 6909240 6909240 C T CD4 Intron 0.18 TCGA-FW-A3R5-06 12 6909241 6909241 C T CD4 5'UTR 0.18 TCGA-FW-A3R5-06 12 69109411 69109411 C T NUP107 Missense_Mutation p.P325L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 69145889 69145889 C T SLC35E3 Silent p.A197A 0.29 TCGA-FW-A3R5-06 12 69158684 69158684 G A SLC35E3 3'UTR 0.26 TCGA-FW-A3R5-06 12 6924073 6924073 G A CD4 Silent p.L174L 0.30 TCGA-FW-A3R5-06 12 6924124 6924124 G A CD4 Silent p.K191K 0.16 TCGA-FW-A3R5-06 12 6925289 6925289 C T CD4 Silent p.L225L 0.35 TCGA-FW-A3R5-06 12 6925421 6925421 C T CD4 Silent p.D269D 0.21 TCGA-FW-A3R5-06 12 6926366 6926366 G A CD4 Silent p.L342L 0.24 TCGA-FW-A3R5-06 12 69264178 69264178 C T CPM Missense_Mutation p.E145K 0.20 tolerated(0.5) benign(0.014) TCGA-FW-A3R5-06 12 69265641 69265641 C T CPM Silent p.R118R 0.23 TCGA-FW-A3R5-06 12 6928611 6928611 C T CD4 3'UTR 0.31 TCGA-FW-A3R5-06 12 6933226 6933226 C T GPR162 Silent p.F54F 0.14 TCGA-FW-A3R5-06 12 6936037 6936037 C T GPR162 Missense_Mutation p.L479F 0.19 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 12 6939120 6939120 G A GPR162 3'Flank 0.13 TCGA-FW-A3R5-06 12 6941024 6941024 G A LEPREL2 Silent p.E385E 0.33 TCGA-FW-A3R5-06 12 6943094 6943094 C T LEPREL2 Missense_Mutation p.L446F 0.22 deleterious(0) benign(0.397) TCGA-FW-A3R5-06 12 6946681 6946681 C T LEPREL2 Missense_Mutation p.P551L 0.24 tolerated(1) probably_damaging(0.989) TCGA-FW-A3R5-06 12 6948179 6948179 C T LEPREL2 Missense_Mutation p.R640C 0.26 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 12 6952194 6952194 G A GNB3 Missense_Mutation p.G53R 0.22 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 12 6953077 6953077 G A GNB3 Missense_Mutation p.D212N 0.25 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 6958151 6958151 G A CDCA3 3'UTR 0.31 TCGA-FW-A3R5-06 12 69652691 69652691 C T CPSF6 Missense_Mutation p.P339L 0.19 tolerated(0.32) unknown(0) TCGA-FW-A3R5-06 12 69652866 69652866 C T CPSF6 Silent p.P397P 0.11 TCGA-FW-A3R5-06 12 6966849 6966849 C T USP5 Silent p.L276L 0.29 TCGA-FW-A3R5-06 12 69756579 69756579 C T YEATS4 Silent p.I21I 0.25 TCGA-FW-A3R5-06 12 69965947 69965947 C T FRS2 Silent p.P154P 0.24 TCGA-FW-A3R5-06 12 70003892 70003892 C T LRRC10 Missense_Mutation p.E243K 0.18 deleterious(0.01) benign(0.169) TCGA-FW-A3R5-06 12 70048889 70048889 G A BEST3 Missense_Mutation p.S602F 0.39 deleterious_low_confidence(0) benign(0.013) TCGA-FW-A3R5-06 12 70049038 70049038 G A BEST3 Silent p.P552P 0.20 TCGA-FW-A3R5-06 12 70049412 70049412 C T BEST3 Missense_Mutation p.D428N 0.20 tolerated(0.13) benign(0.01) TCGA-FW-A3R5-06 12 70087514 70087514 G A BEST3 Missense_Mutation p.R141C 0.34 deleterious(0.01) probably_damaging(0.945) TCGA-FW-A3R5-06 12 7064026 7064026 G A PTPN6 Missense_Mutation p.E129K 0.09 tolerated(1) probably_damaging(0.976) TCGA-FW-A3R5-06 12 70933619 70933619 C T PTPRB Missense_Mutation p.R1895Q 0.20 deleterious(0.01) benign(0.216) TCGA-FW-A3R5-06 12 70933760 70933760 C T PTPRB Silent p.R1879R 0.30 TCGA-FW-A3R5-06 12 70933777 70933777 G A PTPRB Missense_Mutation p.R1874C 0.28 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 12 70938397 70938397 C T PTPRB Missense_Mutation p.E1812K 0.20 deleterious(0.01) probably_damaging(0.918) TCGA-FW-A3R5-06 12 70946574 70946574 C T PTPRB Silent p.K1790K 0.22 TCGA-FW-A3R5-06 12 70946680 70946680 G A PTPRB Missense_Mutation p.P1755L 0.22 tolerated(0.15) benign(0.03) TCGA-FW-A3R5-06 12 70946800 70946800 C T PTPRB Missense_Mutation p.G1715D 0.22 tolerated(0.16) benign(0.329) TCGA-FW-A3R5-06 12 70949081 70949081 G A PTPRB Missense_Mutation p.P1668S 0.22 tolerated(0.55) possibly_damaging(0.559) TCGA-FW-A3R5-06 12 70953127 70953127 C T PTPRB Silent p.R1570R 0.34 TCGA-FW-A3R5-06 12 70953128 70953128 C T PTPRB Missense_Mutation p.R1570K 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 70954525 70954525 C T PTPRB Missense_Mutation p.G1453E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 70954694 70954694 G A PTPRB Missense_Mutation p.L1397F 0.36 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 12 70956739 70956739 G A PTPRB Silent p.D1351D 0.17 TCGA-FW-A3R5-06 12 70960308 70960308 C T PTPRB Missense_Mutation p.E1271K 0.53 tolerated(0.06) benign(0.379) TCGA-FW-A3R5-06 12 70974910 70974910 G A PTPRB Silent p.F828F 0.29 TCGA-FW-A3R5-06 12 70974966 70974966 C T PTPRB Missense_Mutation p.E810K 0.23 tolerated(0.1) possibly_damaging(0.543) TCGA-FW-A3R5-06 12 71003055 71003055 G A PTPRB Missense_Mutation p.S258F 0.17 tolerated_low_confidence(0.1) benign(0.138) TCGA-FW-A3R5-06 12 71016297 71016297 C T PTPRB Missense_Mutation p.R194K 0.23 tolerated_low_confidence(0.22) benign(0.006) TCGA-FW-A3R5-06 12 71032901 71032901 C T PTPRR 3'UTR 0.20 TCGA-FW-A3R5-06 12 71054852 71054852 T A PTPRR Missense_Mutation p.K545M 0.31 deleterious(0) possibly_damaging(0.478) TCGA-FW-A3R5-06 12 71056346 71056346 C T PTPRR Missense_Mutation p.G513R 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 12 71092118 71092118 C T PTPRR Missense_Mutation p.M402I 0.24 deleterious(0.04) benign(0.017) TCGA-FW-A3R5-06 12 71095058 71095058 C T PTPRR Silent p.G351G 0.19 TCGA-FW-A3R5-06 12 71139691 71139691 G A PTPRR Missense_Mutation p.P305L 0.40 deleterious(0) benign(0.089) TCGA-FW-A3R5-06 12 71148051 71148051 C T PTPRR Missense_Mutation p.D220N 0.34 tolerated(0.05) benign(0.21) TCGA-FW-A3R5-06 12 71148406 71148406 G A PTPRR Intron 0.08 TCGA-FW-A3R5-06 12 71155355 71155355 C T PTPRR Missense_Mutation p.G175R 0.19 deleterious(0) possibly_damaging(0.717) TCGA-FW-A3R5-06 12 71531781 71531781 C T TSPAN8 Silent p.G132G 0.23 TCGA-FW-A3R5-06 12 7169850 7169850 C T C1S Missense_Mutation p.P26L 0.16 deleterious(0.04) probably_damaging(0.968) TCGA-FW-A3R5-06 12 7170372 7170372 G A C1S Splice_Site p.X131_splice 0.29 TCGA-FW-A3R5-06 12 7173259 7173259 C T C1S Missense_Mutation p.R286C 0.23 deleterious(0.04) probably_damaging(0.987) TCGA-FW-A3R5-06 12 7175787 7175787 G A C1S Missense_Mutation p.S408N 0.36 tolerated(0.47) possibly_damaging(0.593) TCGA-FW-A3R5-06 12 7188077 7188077 C T C1R Missense_Mutation p.G574E 0.31 tolerated(0.75) benign(0.002) TCGA-FW-A3R5-06 12 7188219 7188219 G A C1R Missense_Mutation p.P527S 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 7188426 7188426 C T C1R Missense_Mutation p.E458K 0.17 tolerated(0.82) benign(0.034) TCGA-FW-A3R5-06 12 71976274 71976274 G A LGR5 Missense_Mutation p.E531K 0.10 deleterious(0.03) possibly_damaging(0.573) TCGA-FW-A3R5-06 12 71977544 71977544 C T LGR5 Missense_Mutation p.S585F 0.23 deleterious(0.03) benign(0.018) TCGA-FW-A3R5-06 12 71977812 71977812 G A LGR5 Silent p.T674T 0.20 TCGA-FW-A3R5-06 12 71978050 71978050 G A LGR5 Missense_Mutation p.G754R 0.12 deleterious(0.05) benign(0.05) TCGA-FW-A3R5-06 12 71978595 71978595 G A LGR5 3'UTR 0.24 TCGA-FW-A3R5-06 12 72022776 72022776 G A ZFC3H1 Missense_Mutation p.P1290S 0.18 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 72036313 72036313 G A ZFC3H1 Silent p.S510S 0.23 TCGA-FW-A3R5-06 12 72092736 72092736 T C TMEM19 Missense_Mutation p.F232L 0.38 tolerated(0.59) possibly_damaging(0.787) TCGA-FW-A3R5-06 12 72092798 72092798 C T TMEM19 Silent p.A252A 0.36 TCGA-FW-A3R5-06 12 72316862 72316862 C T TBC1D15 Missense_Mutation p.P652S 0.29 tolerated(0.87) benign(0) TCGA-FW-A3R5-06 12 72338188 72338188 C T TPH2 Nonsense_Mutation p.Q124* 0.19 TCGA-FW-A3R5-06 12 72355337 72355337 C T TPH2 Intron 0.16 TCGA-FW-A3R5-06 12 72355338 72355338 C T TPH2 Intron 0.15 TCGA-FW-A3R5-06 12 72355367 72355367 G A TPH2 Intron 0.31 TCGA-FW-A3R5-06 12 7242035 7242035 G A C1R Silent p.L207L 0.59 TCGA-FW-A3R5-06 12 7242219 7242219 C T C1R Missense_Mutation p.G178S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 7242285 7242285 G A C1R Missense_Mutation p.P156S 0.34 tolerated(0.86) benign(0.003) TCGA-FW-A3R5-06 12 7248931 7248931 C T C1RL 3'UTR 0.10 TCGA-FW-A3R5-06 12 7249425 7249425 G A C1RL Silent p.L342L 0.34 TCGA-FW-A3R5-06 12 7254553 7254553 G A C1RL Missense_Mutation p.S144F 0.25 deleterious(0) possibly_damaging(0.738) TCGA-FW-A3R5-06 12 7254675 7254675 G A C1RL Silent p.F103F 0.33 TCGA-FW-A3R5-06 12 7260984 7260984 G A C1RL Missense_Mutation p.P55S 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 72667227 72667227 G A TRHDE Silent p.R223R 0.17 TCGA-FW-A3R5-06 12 72680646 72680646 C T TRHDE Missense_Mutation p.S322L 0.26 tolerated(0.1) possibly_damaging(0.659) TCGA-FW-A3R5-06 12 7280952 7280952 G A RBP5 Nonsense_Mutation p.Q46* 0.12 TCGA-FW-A3R5-06 12 7280989 7280989 G A RBP5 Silent p.I33I 0.21 TCGA-FW-A3R5-06 12 7287995 7287995 G A CLSTN3 Silent p.A152A 0.32 TCGA-FW-A3R5-06 12 7287996 7287996 G A CLSTN3 Missense_Mutation p.A153T 0.32 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 12 7289621 7289621 C T CLSTN3 Silent p.T375T 0.37 TCGA-FW-A3R5-06 12 7295530 7295530 C T CLSTN3 Missense_Mutation p.R536C 0.27 deleterious(0) possibly_damaging(0.849) TCGA-FW-A3R5-06 12 72969065 72969065 G A TRHDE Missense_Mutation p.G676E 0.31 tolerated(0.47) benign(0.001) TCGA-FW-A3R5-06 12 73046169 73046169 G A TRHDE Missense_Mutation p.E870K 0.24 deleterious(0.01) possibly_damaging(0.767) TCGA-FW-A3R5-06 12 73056937 73056937 G A TRHDE Missense_Mutation p.E1013K 0.25 tolerated(0.46) benign(0.135) TCGA-FW-A3R5-06 12 73056942 73056942 T C TRHDE Silent p.L1014L 0.31 TCGA-FW-A3R5-06 12 7310146 7310146 C T CLSTN3 Silent p.V863V 0.29 TCGA-FW-A3R5-06 12 7310207 7310207 C T CLSTN3 Missense_Mutation p.P884S 0.33 tolerated(0.73) benign(0) TCGA-FW-A3R5-06 12 7351705 7351705 C T PEX5 Missense_Mutation p.R198C 0.33 deleterious(0.01) benign(0.001) TCGA-FW-A3R5-06 12 7457122 7457122 G A ACSM4 Silent p.K65K 0.12 TCGA-FW-A3R5-06 12 7473344 7473344 G A ACSM4 Silent p.T315T 0.21 TCGA-FW-A3R5-06 12 7526061 7526061 G A CD163L1 Silent p.A1195A 0.10 TCGA-FW-A3R5-06 12 7527128 7527128 C T CD163L1 Missense_Mutation p.G1107R 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 7528297 7528297 G A CD163L1 Silent p.S895S 0.24 TCGA-FW-A3R5-06 12 7531715 7531715 G A CD163L1 Missense_Mutation p.H744Y 0.18 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 12 75442037 75442037 G A KCNC2 Missense_Mutation p.P559L 0.41 deleterious_low_confidence(0.04) benign(0.049) TCGA-FW-A3R5-06 12 75444658 75444658 C T KCNC2 Missense_Mutation p.R376Q 0.10 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 12 75601331 75601331 C T KCNC2 Missense_Mutation p.E145K 0.31 deleterious(0.02) probably_damaging(0.969) TCGA-FW-A3R5-06 12 75601358 75601358 C T KCNC2 Missense_Mutation p.E136K 0.31 deleterious(0) possibly_damaging(0.877) TCGA-FW-A3R5-06 12 75683475 75683475 C T CAPS2 Missense_Mutation p.E460K 0.07 tolerated(0.44) benign(0.02) TCGA-FW-A3R5-06 12 75728596 75728596 G A GLIPR1L1 Missense_Mutation p.D30N 0.34 tolerated(0.05) benign(0.261) TCGA-FW-A3R5-06 12 75874745 75874745 G A GLIPR1 Missense_Mutation p.E29K 0.15 tolerated(0.34) benign(0.001) TCGA-FW-A3R5-06 12 75897712 75897712 G A KRR1 Missense_Mutation p.P268L 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 12 7636110 7636110 C T CD163 Missense_Mutation p.E981K 0.32 tolerated(0.24) probably_damaging(0.948) TCGA-FW-A3R5-06 12 7639174 7639174 G A CD163 Silent p.S793S 0.28 TCGA-FW-A3R5-06 12 7639261 7639261 C T CD163 Silent p.E764E 0.24 TCGA-FW-A3R5-06 12 7639996 7639996 G A CD163 Missense_Mutation p.S670L 0.35 tolerated(0.06) benign(0.02) TCGA-FW-A3R5-06 12 7649458 7649458 C T CD163 Nonsense_Mutation p.W350* 0.19 TCGA-FW-A3R5-06 12 7651534 7651534 C T CD163 Nonsense_Mutation p.W236* 0.24 TCGA-FW-A3R5-06 12 7655151 7655151 C T CD163 Missense_Mutation p.R19K 0.25 tolerated_low_confidence(0.14) possibly_damaging(0.601) TCGA-FW-A3R5-06 12 7656313 7656313 C T CD163 5'UTR 0.26 TCGA-FW-A3R5-06 12 7656339 7656339 G A CD163 5'UTR 0.30 TCGA-FW-A3R5-06 12 76780412 76780412 G A OSBPL8 Missense_Mutation p.R461C 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 77419463 77419463 G A E2F7 Missense_Mutation p.P814S 0.36 tolerated(0.07) benign(0.027) TCGA-FW-A3R5-06 12 7802049 7802049 C T APOBEC1 3'UTR 0.33 TCGA-FW-A3R5-06 12 7805044 7805044 C T APOBEC1 Missense_Mutation p.M144I 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 78400326 78400326 C T NAV3 Silent p.S336S 0.30 TCGA-FW-A3R5-06 12 78401191 78401191 C T NAV3 Missense_Mutation p.P625S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 7848085 7848085 C T GDF3 Silent p.G80G 0.35 TCGA-FW-A3R5-06 12 78513626 78513626 C T NAV3 Missense_Mutation p.S1217F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 78513721 78513721 C T NAV3 Nonsense_Mutation p.R1249* 0.11 TCGA-FW-A3R5-06 12 78513722 78513722 G A NAV3 Missense_Mutation p.R1249Q 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 12 78571017 78571017 C T NAV3 Missense_Mutation p.P1741S 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 78594328 78594328 C T NAV3 Missense_Mutation p.S2242F 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 7864234 7864234 C T DPPA3 Missense_Mutation p.S23F 0.36 tolerated(0.11) benign(0.003) TCGA-FW-A3R5-06 12 7867834 7867834 C T DPPA3 Silent p.I46I 0.12 TCGA-FW-A3R5-06 12 7945794 7945794 C T NANOG Missense_Mutation p.L134F 0.09 deleterious(0.02) probably_damaging(0.934) TCGA-FW-A3R5-06 12 7966949 7966949 C T SLC2A14 Missense_Mutation p.S509N 0.10 tolerated(0.12) benign(0.013) TCGA-FW-A3R5-06 12 79693265 79693265 G A SYT1 Missense_Mutation p.M248I 0.23 deleterious(0.01) benign(0.295) TCGA-FW-A3R5-06 12 79747293 79747293 G A SYT1 Silent p.L274L 0.34 TCGA-FW-A3R5-06 12 79842818 79842818 C T SYT1 Silent p.L395L 0.30 TCGA-FW-A3R5-06 12 80182511 80182511 G A PPP1R12A Missense_Mutation p.R907C 0.23 deleterious(0) possibly_damaging(0.886) TCGA-FW-A3R5-06 12 8023653 8023653 G A SLC2A14 5'UTR 0.19 TCGA-FW-A3R5-06 12 8051682 8051682 C T NANOGP1 RNA 0.33 TCGA-FW-A3R5-06 12 80615938 80615938 C T OTOGL Silent p.F125F 0.25 TCGA-FW-A3R5-06 12 80623121 80623121 C T OTOGL Nonsense_Mutation p.R183* 0.34 TCGA-FW-A3R5-06 12 80633209 80633209 G A OTOGL Missense_Mutation p.D339N 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 80655837 80655837 C T OTOGL Missense_Mutation p.P651S 0.42 tolerated(0.55) probably_damaging(0.986) TCGA-FW-A3R5-06 12 80714267 80714267 G A OTOGL Missense_Mutation p.D1281N 0.17 tolerated(0.67) benign(0.01) TCGA-FW-A3R5-06 12 80722519 80722519 G A OTOGL Missense_Mutation p.R1416Q 0.34 deleterious(0.01) benign(0.001) TCGA-FW-A3R5-06 12 80729743 80729743 C T OTOGL Missense_Mutation p.P1466S 0.13 deleterious(0.02) probably_damaging(0.932) TCGA-FW-A3R5-06 12 80746087 80746087 G A OTOGL Missense_Mutation p.D1751N 0.33 tolerated(0.48) benign(0.004) TCGA-FW-A3R5-06 12 80750645 80750645 C T OTOGL Silent p.F1981F 0.41 TCGA-FW-A3R5-06 12 80752498 80752498 G A OTOGL Missense_Mutation p.D2048N 0.18 deleterious(0.01) possibly_damaging(0.798) TCGA-FW-A3R5-06 12 80770937 80770937 C T OTOGL Silent p.I2263I 0.23 TCGA-FW-A3R5-06 12 81101534 81101534 C T MYF6 Silent p.F12F 0.30 TCGA-FW-A3R5-06 12 81110910 81110910 C T MYF5 Missense_Mutation p.S23F 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 81110911 81110911 C T MYF5 Silent p.S23S 0.46 TCGA-FW-A3R5-06 12 81110977 81110977 G A MYF5 Silent p.E45E 0.43 TCGA-FW-A3R5-06 12 81111096 81111096 G A MYF5 Missense_Mutation p.R85Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 12 81205386 81205386 C T LIN7A Missense_Mutation p.R187Q 0.08 tolerated(0.45) possibly_damaging(0.857) TCGA-FW-A3R5-06 12 81239586 81239586 G A LIN7A Missense_Mutation p.R136C 0.22 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 12 81239646 81239646 C T LIN7A Missense_Mutation p.E116K 0.39 deleterious(0) possibly_damaging(0.874) TCGA-FW-A3R5-06 12 81472121 81472121 G A ACSS3 Silent p.E74E 0.08 TCGA-FW-A3R5-06 12 81532943 81532943 G A ACSS3 Missense_Mutation p.E227K 0.24 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 12 81545644 81545644 G A ACSS3 Missense_Mutation p.G315R 0.15 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 12 81568677 81568677 G A ACSS3 Silent p.Q403Q 0.19 TCGA-FW-A3R5-06 12 81647096 81647096 C T ACSS3 Missense_Mutation p.S577F 0.11 tolerated(0.1) benign(0.006) TCGA-FW-A3R5-06 12 81647141 81647141 C T ACSS3 Missense_Mutation p.P592L 0.20 tolerated(0.24) benign(0.021) TCGA-FW-A3R5-06 12 81647354 81647354 C T ACSS3 Nonsense_Mutation p.R634* 0.18 TCGA-FW-A3R5-06 12 81648681 81648681 G A ACSS3 Missense_Mutation p.E681K 0.21 tolerated(0.32) benign(0.002) TCGA-FW-A3R5-06 12 81648703 81648703 G A ACSS3 3'UTR 0.22 TCGA-FW-A3R5-06 12 81657081 81657081 G A PPFIA2 Missense_Mutation p.S1215F 0.36 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 12 81661830 81661830 C T PPFIA2 Nonsense_Mutation p.W1116* 0.46 TCGA-FW-A3R5-06 12 81675169 81675169 C T PPFIA2 Missense_Mutation p.E1027K 0.25 deleterious(0.01) possibly_damaging(0.456) TCGA-FW-A3R5-06 12 81675180 81675180 C T PPFIA2 Nonsense_Mutation p.W1023* 0.24 TCGA-FW-A3R5-06 12 81719638 81719638 C T PPFIA2 Missense_Mutation p.E854K 0.22 deleterious(0.02) benign(0.197) TCGA-FW-A3R5-06 12 81769583 81769583 G A PPFIA2 Silent p.L375L 0.26 TCGA-FW-A3R5-06 12 8196618 8196618 C T FOXJ2 Silent p.A183A 0.25 TCGA-FW-A3R5-06 12 82147756 82147756 G A PPFIA2 Missense_Mutation p.P82L 0.30 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 12 82147811 82147811 G A PPFIA2 Nonsense_Mutation p.Q64* 0.10 TCGA-FW-A3R5-06 12 8234961 8234961 C T NECAP1 Missense_Mutation p.A26V 0.21 deleterious(0.01) benign(0.119) TCGA-FW-A3R5-06 12 8234962 8234962 C T NECAP1 Silent p.A26A 0.19 TCGA-FW-A3R5-06 12 8245339 8245339 C T NECAP1 Silent p.L151L 0.30 TCGA-FW-A3R5-06 12 8374541 8374541 G A FAM90A1 Silent p.L424L 0.19 TCGA-FW-A3R5-06 12 8374623 8374623 C T FAM90A1 Missense_Mutation p.R397Q 0.15 tolerated(0.22) possibly_damaging(0.791) TCGA-FW-A3R5-06 12 8375235 8375235 G A FAM90A1 Missense_Mutation p.S193F 0.20 tolerated(0.55) possibly_damaging(0.898) TCGA-FW-A3R5-06 12 8376633 8376633 C T FAM90A1 Missense_Mutation p.G101E 0.29 tolerated(0.32) possibly_damaging(0.736) TCGA-FW-A3R5-06 12 8376712 8376712 C T FAM90A1 Missense_Mutation p.E75K 0.16 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 12 8386984 8386984 G A RP11-266K4.9 5'Flank 0.15 TCGA-FW-A3R5-06 12 85260961 85260961 G A SLC6A15 Missense_Mutation p.L503F 0.28 tolerated(0.2) benign(0.021) TCGA-FW-A3R5-06 12 85266876 85266876 A T SLC6A15 Missense_Mutation p.C367S 0.26 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 12 85432029 85432029 A C LRRIQ1 Missense_Mutation p.E25D 0.10 deleterious(0.02) benign(0.113) TCGA-FW-A3R5-06 12 85434298 85434298 C T LRRIQ1 Missense_Mutation p.H55Y 0.19 tolerated(0.28) benign(0.037) TCGA-FW-A3R5-06 12 85449568 85449568 G A LRRIQ1 Missense_Mutation p.E333K 0.48 tolerated(0.06) possibly_damaging(0.823) TCGA-FW-A3R5-06 12 85450471 85450471 G A LRRIQ1 Missense_Mutation p.E634K 0.18 deleterious(0.05) benign(0.293) TCGA-FW-A3R5-06 12 85500354 85500354 C T LRRIQ1 Missense_Mutation p.S1113F 0.23 deleterious(0.03) benign(0.012) TCGA-FW-A3R5-06 12 85518140 85518140 G A LRRIQ1 Missense_Mutation p.E1284K 0.35 tolerated(0.18) benign(0.063) TCGA-FW-A3R5-06 12 8610502 8610502 G A CLEC6A Missense_Mutation p.G14S 0.22 tolerated(0.61) benign(0.039) TCGA-FW-A3R5-06 12 8610536 8610536 G A CLEC6A Missense_Mutation p.G25E 0.33 deleterious(0.01) benign(0.105) TCGA-FW-A3R5-06 12 8612237 8612237 G A CLEC6A Missense_Mutation p.E56K 0.12 tolerated(0.61) possibly_damaging(0.631) TCGA-FW-A3R5-06 12 86198601 86198601 G A RASSF9 Missense_Mutation p.P396L 0.12 tolerated(0.28) benign(0.002) TCGA-FW-A3R5-06 12 86276287 86276287 T A NTS 3'UTR 0.44 TCGA-FW-A3R5-06 12 86373155 86373155 G A MGAT4C Missense_Mutation p.P450L 0.17 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 12 86373732 86373732 C T MGAT4C Missense_Mutation p.G258S 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 8666216 8666216 C T CLEC4D 5'UTR 0.22 TCGA-FW-A3R5-06 12 8673861 8673861 G A CLEC4D Silent p.L214L 0.35 TCGA-FW-A3R5-06 12 8687402 8687402 G A CLEC4E Silent p.F164F 0.25 TCGA-FW-A3R5-06 12 8692525 8692525 G A CLEC4E Missense_Mutation p.S19F 0.21 tolerated(0.16) benign(0.01) TCGA-FW-A3R5-06 12 8692540 8692540 C T CLEC4E Missense_Mutation p.R14K 0.19 tolerated(0.63) benign(0.006) TCGA-FW-A3R5-06 12 8757435 8757435 G A AICDA Missense_Mutation p.R171C 0.18 tolerated(0.12) probably_damaging(0.946) TCGA-FW-A3R5-06 12 8757480 8757480 C T AICDA Missense_Mutation p.E156K 0.33 tolerated(0.78) benign(0.018) TCGA-FW-A3R5-06 12 8757986 8757986 C T AICDA Nonsense_Mutation p.W84* 0.29 TCGA-FW-A3R5-06 12 8758078 8758078 C T AICDA Missense_Mutation p.G54S 0.24 deleterious(0.04) probably_damaging(0.98) TCGA-FW-A3R5-06 12 8800731 8800731 G A MFAP5 Missense_Mutation p.P160S 0.19 deleterious(0.03) possibly_damaging(0.821) TCGA-FW-A3R5-06 12 8802109 8802109 C T MFAP5 Missense_Mutation p.E133K 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 12 8814653 8814653 G A MFAP5 Silent p.I16I 0.29 TCGA-FW-A3R5-06 12 88376921 88376921 G A C12orf50 Missense_Mutation p.P393L 0.14 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 12 88379651 88379651 C T C12orf50 Missense_Mutation p.E368K 0.23 tolerated(0.11) possibly_damaging(0.628) TCGA-FW-A3R5-06 12 88379792 88379792 G A C12orf50 Missense_Mutation p.H321Y 0.07 deleterious(0.02) benign(0.009) TCGA-FW-A3R5-06 12 88380164 88380164 G A C12orf50 Missense_Mutation p.H283Y 0.30 deleterious(0) possibly_damaging(0.854) TCGA-FW-A3R5-06 12 88420335 88420335 C T C12orf50 Silent p.V21V 0.08 TCGA-FW-A3R5-06 12 88910190 88910190 G A KITLG Silent p.S147S 0.23 TCGA-FW-A3R5-06 12 88910219 88910219 C T KITLG Missense_Mutation p.E138K 0.15 tolerated(0.18) possibly_damaging(0.691) TCGA-FW-A3R5-06 12 88926235 88926235 G A KITLG Missense_Mutation p.P59S 0.23 deleterious(0.01) benign(0.186) TCGA-FW-A3R5-06 12 89916703 89916703 G A GALNT4 Missense_Mutation p.P542S 0.10 tolerated(0.41) benign(0.284) TCGA-FW-A3R5-06 12 89998001 89998001 G A ATP2B1 Silent p.F855F 0.29 TCGA-FW-A3R5-06 12 90010762 90010762 G A ATP2B1 Silent p.D628D 0.13 TCGA-FW-A3R5-06 12 9001395 9001395 C T A2ML1 Missense_Mutation p.P638L 0.16 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 12 91347469 91347469 C T CCER1 Missense_Mutation p.E351K 0.23 tolerated(0.35) unknown(0) TCGA-FW-A3R5-06 12 91347554 91347554 G A CCER1 Silent p.V322V 0.21 TCGA-FW-A3R5-06 12 91347850 91347850 C T CCER1 Missense_Mutation p.E224K 0.21 tolerated(0.85) benign(0.202) TCGA-FW-A3R5-06 12 91348352 91348352 G A CCER1 Silent p.P56P 0.28 TCGA-FW-A3R5-06 12 91371958 91371958 C T EPYC Missense_Mutation p.E83K 0.26 tolerated(0.83) benign(0.008) TCGA-FW-A3R5-06 12 9144893 9144893 G A KLRG1 Nonsense_Mutation p.W58* 0.32 TCGA-FW-A3R5-06 12 91449884 91449884 C T KERA Missense_Mutation p.E59K 0.27 deleterious(0) benign(0.158) TCGA-FW-A3R5-06 12 91498068 91498068 G A LUM Silent p.I297I 0.26 TCGA-FW-A3R5-06 12 91502456 91502456 G A LUM Missense_Mutation p.L101F 0.28 deleterious(0.02) benign(0.436) TCGA-FW-A3R5-06 12 91502502 91502502 G A LUM Silent p.A85A 0.32 TCGA-FW-A3R5-06 12 91539734 91539734 C T DCN 3'UTR 0.19 TCGA-FW-A3R5-06 12 91539941 91539941 G A DCN Missense_Mutation p.S325L 0.33 deleterious(0) possibly_damaging(0.578) TCGA-FW-A3R5-06 12 91572281 91572281 C T DCN Missense_Mutation p.G17R 0.39 tolerated(0.76) benign(0.13) TCGA-FW-A3R5-06 12 9161639 9161639 G A KLRG1 Silent p.R142R 0.12 TCGA-FW-A3R5-06 12 9225293 9225293 C T A2M Missense_Mutation p.E1311K 0.34 tolerated(0.17) benign(0.001) TCGA-FW-A3R5-06 12 9258912 9258912 C T A2M Missense_Mutation p.E342K 0.37 tolerated(0.28) benign(0.005) TCGA-FW-A3R5-06 12 9264799 9264799 G A A2M Missense_Mutation p.R147C 0.17 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 12 92814813 92814813 C T CLLU1OS Silent p.G93G 0.18 TCGA-FW-A3R5-06 12 92818597 92818597 G A CLLU1 Silent p.L47L 0.26 TCGA-FW-A3R5-06 12 9307218 9307218 G A PZP Silent p.S1256S 0.30 TCGA-FW-A3R5-06 12 93100502 93100502 G A C12orf74 Missense_Mutation p.G32E 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 93100657 93100657 C T C12orf74 Missense_Mutation p.L84F 0.31 tolerated(0.15) benign(0.232) TCGA-FW-A3R5-06 12 93100687 93100687 G A C12orf74 Missense_Mutation p.D94N 0.28 tolerated(0.24) benign(0.063) TCGA-FW-A3R5-06 12 93100831 93100831 G A C12orf74 Missense_Mutation p.E142K 0.35 tolerated(0.19) benign(0.111) TCGA-FW-A3R5-06 12 93100888 93100888 C T C12orf74 Missense_Mutation p.P161S 0.13 tolerated(0.49) benign(0.368) TCGA-FW-A3R5-06 12 93134671 93134671 C T PLEKHG7 Missense_Mutation p.L16F 0.24 deleterious(0.02) probably_damaging(0.976) TCGA-FW-A3R5-06 12 9321515 9321515 G A PZP Missense_Mutation p.S686L 0.28 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 12 93244932 93244932 G A EEA1 Silent p.L251L 0.21 TCGA-FW-A3R5-06 12 9333638 9333638 G A PZP Missense_Mutation p.R594C 0.25 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 12 9333729 9333729 C T PZP Splice_Site p.X564_splice 0.14 TCGA-FW-A3R5-06 12 93968856 93968856 C T SOCS2 Silent p.L166L 0.35 TCGA-FW-A3R5-06 12 94580218 94580218 C T PLXNC1 Missense_Mutation p.P470S 0.20 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 12 94965318 94965318 G A TMCC3 Missense_Mutation p.R443C 0.38 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 12 94975597 94975597 C T TMCC3 Missense_Mutation p.D266N 0.24 tolerated(0.09) probably_damaging(0.921) TCGA-FW-A3R5-06 12 95228202 95228202 G A MIR492 RNA 0.24 TCGA-FW-A3R5-06 12 95397478 95397478 C T NDUFA12 5'UTR 0.18 TCGA-FW-A3R5-06 12 95419008 95419008 C T NR2C1 Missense_Mutation p.E519K 0.21 tolerated(0.91) benign(0.079) TCGA-FW-A3R5-06 12 95502186 95502186 G A FGD6 Nonsense_Mutation p.Q1068* 0.20 TCGA-FW-A3R5-06 12 95602890 95602890 C A FGD6 Missense_Mutation p.D724Y 0.16 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 12 95603935 95603935 C T FGD6 Silent p.V375V 0.27 TCGA-FW-A3R5-06 12 95604162 95604162 G A FGD6 Missense_Mutation p.P300S 0.27 tolerated_low_confidence(0.28) benign(0.145) TCGA-FW-A3R5-06 12 95604975 95604975 G A FGD6 Missense_Mutation p.P29S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 12 95694267 95694267 C T VEZT Missense_Mutation p.P720S 0.25 tolerated(0.91) benign(0.05) TCGA-FW-A3R5-06 12 95927254 95927254 G A USP44 Missense_Mutation p.S260F 0.17 tolerated(0.17) benign(0.008) TCGA-FW-A3R5-06 12 96059665 96059665 C T NTN4 Silent p.L557L 0.21 TCGA-FW-A3R5-06 12 96076520 96076520 C T NTN4 Nonsense_Mutation p.W491* 0.21 TCGA-FW-A3R5-06 12 96106999 96106999 C T NTN4 Missense_Mutation p.E328K 0.22 tolerated(0.14) possibly_damaging(0.845) TCGA-FW-A3R5-06 12 96180974 96180974 C T NTN4 Missense_Mutation p.E110K 0.28 tolerated(0.36) benign(0.155) TCGA-FW-A3R5-06 12 96282260 96282260 C - CCDC38 Frame_Shift_Del p.R299Pfs*24 0.30 TCGA-FW-A3R5-06 12 96354255 96354255 G A AMDHD1 Missense_Mutation p.E223K 0.09 tolerated(0.29) benign(0.005) TCGA-FW-A3R5-06 12 96389457 96389457 C T HAL Missense_Mutation p.E78K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.594) TCGA-FW-A3R5-06 12 96421285 96421285 G A LTA4H Silent p.L116L 0.15 TCGA-FW-A3R5-06 12 97045391 97045391 G A C12orf55 Nonsense_Mutation p.W1633* 0.42 TCGA-FW-A3R5-06 12 97051876 97051876 G A C12orf55 Missense_Mutation p.V1773I 0.23 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 12 97078893 97078893 C T C12orf55 Missense_Mutation p.S1964L 0.29 tolerated(0.62) benign(0.016) TCGA-FW-A3R5-06 12 97137245 97137245 G A C12orf55 Missense_Mutation p.D2429N 0.30 deleterious(0.01) benign(0.002) TCGA-FW-A3R5-06 12 97150338 97150338 C T C12orf55 Missense_Mutation p.S2648L 0.24 tolerated(0.65) benign(0) TCGA-FW-A3R5-06 12 97158976 97158976 C T C12orf55 Missense_Mutation p.S2754L 0.26 deleterious(0.01) benign(0) TCGA-FW-A3R5-06 12 97339584 97339584 C T NEDD1 Missense_Mutation p.R597C 0.38 deleterious(0.01) possibly_damaging(0.707) TCGA-FW-A3R5-06 12 98126997 98126997 C T RP11-1016B18.1 RNA 0.41 TCGA-FW-A3R5-06 12 98849373 98849373 G A SLC9A7P1 RNA 0.31 TCGA-FW-A3R5-06 12 98849634 98849634 C T SLC9A7P1 RNA 0.16 TCGA-FW-A3R5-06 12 98849739 98849739 G A SLC9A7P1 RNA 0.11 TCGA-FW-A3R5-06 12 98850360 98850360 G A SLC9A7P1 RNA 0.27 TCGA-FW-A3R5-06 12 98941610 98941610 C T TMPO Missense_Mutation p.H338Y 0.31 tolerated_low_confidence(0.07) benign(0.02) TCGA-FW-A3R5-06 12 99007635 99007635 G A IKBIP Silent p.L261L 0.20 TCGA-FW-A3R5-06 12 99060038 99060038 C T APAF1 Missense_Mutation p.S422F 0.30 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 12 9907256 9907256 C T CD69 Missense_Mutation p.E140K 0.30 tolerated(0.2) benign(0.132) TCGA-FW-A3R5-06 12 993927 993927 C T WNK1 Silent p.P1319P 0.29 TCGA-FW-A3R5-06 12 99446978 99446978 G A ANKS1B Missense_Mutation p.S912L 0.23 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 12 994600 994600 C T WNK1 Missense_Mutation p.L1544F 0.20 tolerated_low_confidence(0.4) benign(0.013) TCGA-FW-A3R5-06 12 994959 994959 C T WNK1 Silent p.F1663F 0.25 TCGA-FW-A3R5-06 12 99640355 99640355 C T ANKS1B Missense_Mutation p.E682K 0.12 tolerated(0.18) benign(0.174) TCGA-FW-A3R5-06 12 99898318 99898318 C T ANKS1B Missense_Mutation p.M458I 0.42 tolerated(0.25) benign(0) TCGA-FW-A3R5-06 13 101710325 101710325 G A NALCN Silent p.P1663P 0.25 TCGA-FW-A3R5-06 13 101720309 101720309 G A NALCN Silent p.H1469H 0.23 TCGA-FW-A3R5-06 13 101748028 101748028 C T NALCN Missense_Mutation p.D1056N 0.25 tolerated(0.54) benign(0.01) TCGA-FW-A3R5-06 13 101759873 101759873 G A NALCN Silent p.N848N 0.17 TCGA-FW-A3R5-06 13 101776985 101776985 C T NALCN Silent p.K722K 0.33 TCGA-FW-A3R5-06 13 102250508 102250508 G A ITGBL1 Missense_Mutation p.G292R 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 102378965 102378965 C T FGF14 Missense_Mutation p.E207K 0.09 tolerated(0.12) benign(0.18) TCGA-FW-A3R5-06 13 103326685 103326685 T A TPP2 Missense_Mutation p.C1129S 0.30 tolerated(0.22) benign(0.004) TCGA-FW-A3R5-06 13 103339317 103339317 G A METTL21C Missense_Mutation p.L125F 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 103443710 103443710 G A KDELC1 Missense_Mutation p.S248L 0.35 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 13 103510682 103510682 C T BIVM-ERCC5 Silent p.L622L 0.31 TCGA-FW-A3R5-06 13 103698508 103698508 C T SLC10A2 Missense_Mutation p.G341E 0.27 tolerated(0.51) benign(0.002) TCGA-FW-A3R5-06 13 103701746 103701746 G A SLC10A2 Missense_Mutation p.S271F 0.24 tolerated(0.09) benign(0.022) TCGA-FW-A3R5-06 13 103705025 103705025 G A SLC10A2 Missense_Mutation p.S177F 0.25 deleterious(0.03) benign(0.038) TCGA-FW-A3R5-06 13 106119365 106119365 G A DAOA Intron 0.24 TCGA-FW-A3R5-06 13 107220265 107220265 C A ARGLU1 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 13 107823108 107823108 C T FAM155A Missense_Mutation p.D372N 0.29 tolerated(0.44) possibly_damaging(0.521) TCGA-FW-A3R5-06 13 108518107 108518107 C T FAM155A Missense_Mutation p.E280K 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 13 108518795 108518795 G A FAM155A Silent p.V50V 0.26 TCGA-FW-A3R5-06 13 108861132 108861132 G A LIG4 Silent p.L829L 0.17 TCGA-FW-A3R5-06 13 108863374 108863374 G A LIG4 Silent p.A81A 0.23 TCGA-FW-A3R5-06 13 109318260 109318260 C T MYO16 5'UTR 0.12 TCGA-FW-A3R5-06 13 109318451 109318451 C T MYO16 Silent p.L60L 0.23 TCGA-FW-A3R5-06 13 109365066 109365066 C T MYO16 Missense_Mutation p.S95F 0.26 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 13 109672146 109672146 C T MYO16 Missense_Mutation p.L873F 0.17 tolerated(0.51) possibly_damaging(0.747) TCGA-FW-A3R5-06 13 109704794 109704794 G A MYO16 Missense_Mutation p.E985K 0.28 tolerated(0.21) benign(0.199) TCGA-FW-A3R5-06 13 109707875 109707875 C T MYO16 Silent p.V1067V 0.20 TCGA-FW-A3R5-06 13 109707915 109707915 C T MYO16 Missense_Mutation p.R1081C 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 109779736 109779736 C T MYO16 Missense_Mutation p.P1275S 0.32 deleterious(0.01) benign(0.434) TCGA-FW-A3R5-06 13 109793637 109793637 C T MYO16 Missense_Mutation p.P1671S 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 13 109817360 109817360 C T MYO16 Missense_Mutation p.S1737L 0.28 deleterious_low_confidence(0.02) benign(0.115) TCGA-FW-A3R5-06 13 110804801 110804801 G A COL4A1 Missense_Mutation p.S1603F 0.29 unknown(0) TCGA-FW-A3R5-06 13 110819517 110819517 G A COL4A1 Missense_Mutation p.P1313S 0.25 probably_damaging(0.99) TCGA-FW-A3R5-06 13 110826298 110826298 C T COL4A1 Missense_Mutation p.E1152K 0.25 probably_damaging(0.987) TCGA-FW-A3R5-06 13 110826801 110826801 C T COL4A1 Missense_Mutation p.G1133E 0.28 probably_damaging(1) TCGA-FW-A3R5-06 13 110826853 110826853 C T COL4A1 Missense_Mutation p.E1116K 0.33 probably_damaging(0.991) TCGA-FW-A3R5-06 13 110827704 110827704 C T COL4A1 Missense_Mutation p.G1020E 0.28 probably_damaging(1) TCGA-FW-A3R5-06 13 110829374 110829374 G A COL4A1 Silent p.G909G 0.26 TCGA-FW-A3R5-06 13 110830538 110830538 G A COL4A1 Silent p.F833F 0.23 TCGA-FW-A3R5-06 13 110831287 110831287 C T COL4A1 Missense_Mutation p.G814E 0.36 benign(0.059) TCGA-FW-A3R5-06 13 110831353 110831353 G A COL4A1 Missense_Mutation p.S792F 0.20 possibly_damaging(0.652) TCGA-FW-A3R5-06 13 110831646 110831646 G A COL4A1 Silent p.I772I 0.27 TCGA-FW-A3R5-06 13 110833706 110833706 G A COL4A1 Missense_Mutation p.P709L 0.33 benign(0.085) TCGA-FW-A3R5-06 13 110835594 110835594 G A COL4A1 Missense_Mutation p.P643S 0.16 benign(0.001) TCGA-FW-A3R5-06 13 110855942 110855942 C T COL4A1 Missense_Mutation p.E324K 0.22 unknown(0) TCGA-FW-A3R5-06 13 110857886 110857886 C T COL4A1 Splice_Site p.X287_splice 0.19 TCGA-FW-A3R5-06 13 111077171 111077171 G A COL4A2 Missense_Mutation p.G91S 0.27 probably_damaging(1) TCGA-FW-A3R5-06 13 111080842 111080842 G A COL4A2 Missense_Mutation p.G130E 0.18 probably_damaging(1) TCGA-FW-A3R5-06 13 111109730 111109730 C T COL4A2 Silent p.G460G 0.21 TCGA-FW-A3R5-06 13 111138100 111138100 C T COL4A2 Missense_Mutation p.P1042S 0.31 possibly_damaging(0.876) TCGA-FW-A3R5-06 13 111141854 111141854 C T COL4A2 Silent p.F1090F 0.22 TCGA-FW-A3R5-06 13 111156206 111156206 C T COL4A2 Missense_Mutation p.T1384I 0.21 possibly_damaging(0.803) TCGA-FW-A3R5-06 13 111156291 111156291 C T COL4A2 Silent p.P1412P 0.08 TCGA-FW-A3R5-06 13 111158873 111158873 C T COL4A2 Missense_Mutation p.P1505L 0.12 unknown(0) TCGA-FW-A3R5-06 13 111158883 111158883 G A COL4A2 Missense_Mutation p.M1508I 0.46 unknown(0) TCGA-FW-A3R5-06 13 111164350 111164350 C T COL4A2 Missense_Mutation p.R1651C 0.30 unknown(0) TCGA-FW-A3R5-06 13 111164364 111164364 C T COL4A2 Silent p.F1655F 0.26 TCGA-FW-A3R5-06 13 111164437 111164437 C T COL4A2 Missense_Mutation p.P1680S 0.15 unknown(0) TCGA-FW-A3R5-06 13 111176459 111176459 C T RAB20 Silent p.Q86Q 0.18 TCGA-FW-A3R5-06 13 111277611 111277611 C T CARKD Silent p.I124I 0.21 TCGA-FW-A3R5-06 13 111546503 111546503 G A ANKRD10 Intron 0.29 TCGA-FW-A3R5-06 13 113153168 113153168 G A TUBGCP3 Intron 0.36 TCGA-FW-A3R5-06 13 113202003 113202003 G A TUBGCP3 Missense_Mutation p.L367F 0.15 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3R5-06 13 113464984 113464984 C T ATP11A Missense_Mutation p.P129S 0.10 tolerated(0.14) benign(0.014) TCGA-FW-A3R5-06 13 113512583 113512583 C T ATP11A Silent p.L882L 0.17 TCGA-FW-A3R5-06 13 113740500 113740500 C T MCF2L Silent p.S770S 0.33 TCGA-FW-A3R5-06 13 113783888 113783888 G A F10 Missense_Mutation p.E65K 0.24 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 13 113814419 113814419 G A PROZ Silent p.L76L 0.29 TCGA-FW-A3R5-06 13 113909298 113909298 C T CUL4A Silent p.S630S 0.28 TCGA-FW-A3R5-06 13 113973849 113973849 C T LAMP1 Missense_Mutation p.P210S 0.22 tolerated(0.13) probably_damaging(0.969) TCGA-FW-A3R5-06 13 113973850 113973850 C T LAMP1 Missense_Mutation p.P210L 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 13 114078548 114078548 C T ADPRHL1 Silent p.R297R 0.09 TCGA-FW-A3R5-06 13 114107626 114107626 G A ADPRHL1 Silent p.L43L 0.26 TCGA-FW-A3R5-06 13 114202624 114202624 C T TMCO3 Silent p.L593L 0.22 TCGA-FW-A3R5-06 13 114498180 114498180 C T TMEM255B Silent p.I104I 0.20 TCGA-FW-A3R5-06 13 114773083 114773083 C T RASA3 Splice_Site p.X557_splice 0.08 TCGA-FW-A3R5-06 13 19748171 19748171 G A TUBA3C Silent p.F395F 0.26 TCGA-FW-A3R5-06 13 19752519 19752519 C T TUBA3C Missense_Mutation p.G81E 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FW-A3R5-06 13 19753537 19753537 C T TUBA3C Missense_Mutation p.G57E 0.20 tolerated_low_confidence(0.06) probably_damaging(0.909) TCGA-FW-A3R5-06 13 19997160 19997160 G A TPTE2 3'UTR 0.25 TCGA-FW-A3R5-06 13 20024478 20024478 C T TPTE2 Missense_Mutation p.R270K 0.28 tolerated(0.63) benign(0.027) TCGA-FW-A3R5-06 13 20048142 20048142 G A TPTE2 Missense_Mutation p.L102F 0.27 tolerated(0.35) benign(0.004) TCGA-FW-A3R5-06 13 20763336 20763336 C T GJB2 Missense_Mutation p.E129K 0.21 tolerated(0.34) benign(0.007) TCGA-FW-A3R5-06 13 20763615 20763615 G A GJB2 Missense_Mutation p.L36F 0.25 tolerated(0.35) probably_damaging(1) TCGA-FW-A3R5-06 13 20796788 20796788 A G GJB6 3'UTR 0.23 TCGA-FW-A3R5-06 13 20797319 20797319 C T GJB6 Missense_Mutation p.E101K 0.21 tolerated(0.33) benign(0.009) TCGA-FW-A3R5-06 13 21396000 21396000 G A XPO4 Missense_Mutation p.S339F 0.27 tolerated(0.69) benign(0.269) TCGA-FW-A3R5-06 13 21557827 21557827 G A LATS2 Missense_Mutation p.T673I 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 13 21563423 21563423 G A LATS2 Missense_Mutation p.P166S 0.34 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 13 21732064 21732064 G A SKA3 Silent p.L372L 0.25 TCGA-FW-A3R5-06 13 22275367 22275367 C T FGF9 Silent p.F140F 0.30 TCGA-FW-A3R5-06 13 23894882 23894882 C T SGCG Missense_Mutation p.H229Y 0.26 deleterious(0.03) benign(0.384) TCGA-FW-A3R5-06 13 23906980 23906980 G A SACS Missense_Mutation p.L3679F 0.27 probably_damaging(0.995) TCGA-FW-A3R5-06 13 23912862 23912862 G A SACS Missense_Mutation p.S1718F 0.58 benign(0.001) TCGA-FW-A3R5-06 13 23915544 23915544 G A SACS Missense_Mutation p.S824L 0.31 benign(0.364) TCGA-FW-A3R5-06 13 24455909 24455909 G A MIPEP Silent p.I127I 0.25 TCGA-FW-A3R5-06 13 24465472 24465472 C T C1QTNF9B Missense_Mutation p.D320N 0.22 tolerated(0.42) benign(0.416) TCGA-FW-A3R5-06 13 24823824 24823824 C T SPATA13 Silent p.D621D 0.21 TCGA-FW-A3R5-06 13 24858320 24858320 G A SPATA13 Missense_Mutation p.G738S 0.37 tolerated(0.05) benign(0.411) TCGA-FW-A3R5-06 13 24861028 24861028 C T SPATA13 Silent p.V869V 0.28 TCGA-FW-A3R5-06 13 24896029 24896029 G A C1QTNF9 3'UTR 0.18 TCGA-FW-A3R5-06 13 25264840 25264840 T A ATP12A Nonsense_Mutation p.Y260* 0.29 TCGA-FW-A3R5-06 13 25266961 25266961 C T ATP12A Missense_Mutation p.S441F 0.18 deleterious(0.03) possibly_damaging(0.828) TCGA-FW-A3R5-06 13 25272796 25272796 C T ATP12A Missense_Mutation p.L511F 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-FW-A3R5-06 13 25272862 25272862 G A ATP12A Missense_Mutation p.E533K 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 13 25280503 25280503 G A ATP12A Missense_Mutation p.E697K 0.28 tolerated(0.13) benign(0.204) TCGA-FW-A3R5-06 13 25281188 25281188 G A ATP12A Missense_Mutation p.G739R 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 25281301 25281301 C T ATP12A Silent p.F776F 0.27 TCGA-FW-A3R5-06 13 25283504 25283504 C T ATP12A Silent p.I838I 0.14 TCGA-FW-A3R5-06 13 25284986 25284986 C T ATP12A Missense_Mutation p.S991F 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-FW-A3R5-06 13 25341421 25341421 G A RNF17 Missense_Mutation p.E48K 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.899) TCGA-FW-A3R5-06 13 25376587 25376587 G A RNF17 Missense_Mutation p.M609I 0.30 deleterious(0) benign(0.38) TCGA-FW-A3R5-06 13 25399814 25399814 G A RNF17 Missense_Mutation p.E717K 0.27 deleterious(0.04) probably_damaging(0.973) TCGA-FW-A3R5-06 13 25406065 25406065 G A RNF17 Missense_Mutation p.E811K 0.34 deleterious(0.04) possibly_damaging(0.899) TCGA-FW-A3R5-06 13 25416232 25416232 C T RNF17 Missense_Mutation p.P846S 0.25 tolerated(0.64) benign(0.054) TCGA-FW-A3R5-06 13 25451229 25451229 G A RNF17 Missense_Mutation p.E1560K 0.32 tolerated(0.49) benign(0) TCGA-FW-A3R5-06 13 25670448 25670448 C T PABPC3 Missense_Mutation p.L38F 0.28 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 13 25671151 25671151 G A PABPC3 Missense_Mutation p.R272Q 0.27 deleterious(0.01) probably_damaging(0.952) TCGA-FW-A3R5-06 13 25671518 25671518 C T PABPC3 Silent p.N394N 0.26 TCGA-FW-A3R5-06 13 25744230 25744230 C T AMER2 Missense_Mutation p.E510K 0.21 tolerated(0.07) possibly_damaging(0.519) TCGA-FW-A3R5-06 13 26112152 26112152 C T ATP8A2 Silent p.V178V 0.22 TCGA-FW-A3R5-06 13 26128028 26128028 G A ATP8A2 Silent p.V385V 0.31 TCGA-FW-A3R5-06 13 26163834 26163834 G A ATP8A2 Silent p.L736L 0.25 TCGA-FW-A3R5-06 13 26273425 26273425 G A ATP8A2 Missense_Mutation p.E776K 0.23 deleterious(0.04) benign(0.244) TCGA-FW-A3R5-06 13 26789042 26789042 G A RNF6 Missense_Mutation p.S326F 0.32 deleterious(0.01) benign(0.425) TCGA-FW-A3R5-06 13 26789453 26789453 G A RNF6 Missense_Mutation p.S189L 0.06 deleterious(0.02) benign(0.202) TCGA-FW-A3R5-06 13 26974631 26974631 C T CDK8 Silent p.T325T 0.07 TCGA-FW-A3R5-06 13 27847178 27847178 C T RASL11A Silent p.L92L 0.26 TCGA-FW-A3R5-06 13 27847352 27847352 C T RASL11A Silent p.D150D 0.31 TCGA-FW-A3R5-06 13 28127349 28127349 G A LNX2 Missense_Mutation p.P592S 0.10 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 13 28136759 28136759 G A LNX2 Nonsense_Mutation p.Q339* 0.24 TCGA-FW-A3R5-06 13 28136760 28136760 G A LNX2 Silent p.F338F 0.23 TCGA-FW-A3R5-06 13 28136867 28136867 G A LNX2 Missense_Mutation p.L303F 0.06 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 13 28537182 28537182 G A CDX2 3'UTR 0.18 TCGA-FW-A3R5-06 13 28542661 28542661 C T CDX2 Silent p.Q161Q 0.15 TCGA-FW-A3R5-06 13 28562602 28562602 G A URAD Missense_Mutation p.S58L 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-FW-A3R5-06 13 28608057 28608057 C T FLT3 Missense_Mutation p.V637I 0.08 tolerated(0.46) benign(0.263) TCGA-FW-A3R5-06 13 28610179 28610179 C T FLT3 Silent p.R437R 0.32 TCGA-FW-A3R5-06 13 28877480 28877480 C T FLT1 Missense_Mutation p.E1281K 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 13 28883029 28883029 C T FLT1 Missense_Mutation p.R1224K 0.35 deleterious(0.03) benign(0.008) TCGA-FW-A3R5-06 13 28895627 28895627 C T FLT1 Silent p.K1049K 0.31 TCGA-FW-A3R5-06 13 29002037 29002037 C T FLT1 Silent p.A376A 0.20 TCGA-FW-A3R5-06 13 29005439 29005439 C T FLT1 Silent p.K274K 0.35 TCGA-FW-A3R5-06 13 29008201 29008201 G A FLT1 Nonsense_Mutation p.R224* 0.25 TCGA-FW-A3R5-06 13 29012409 29012409 G A FLT1 Silent p.L154L 0.66 TCGA-FW-A3R5-06 13 29012441 29012441 C T FLT1 Missense_Mutation p.E144K 0.16 tolerated(0.41) benign(0.021) TCGA-FW-A3R5-06 13 29012450 29012450 C T FLT1 Missense_Mutation p.E141K 0.25 tolerated(0.31) benign(0.232) TCGA-FW-A3R5-06 13 29278138 29278138 G A SLC46A3 Missense_Mutation p.P415S 0.25 tolerated(0.4) benign(0.026) TCGA-FW-A3R5-06 13 29284912 29284912 G A SLC46A3 Missense_Mutation p.R377C 0.25 tolerated(0.2) benign(0.002) TCGA-FW-A3R5-06 13 29284944 29284944 G A SLC46A3 Missense_Mutation p.S366F 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 13 29287358 29287358 G A SLC46A3 Silent p.D173D 0.37 TCGA-FW-A3R5-06 13 29598784 29598784 C T MTUS2 5'UTR 0.32 TCGA-FW-A3R5-06 13 29598859 29598859 G A MTUS2 Silent p.K18K 0.19 TCGA-FW-A3R5-06 13 29599756 29599756 G A MTUS2 Silent p.E317E 0.38 TCGA-FW-A3R5-06 13 29599804 29599804 G A MTUS2 Silent p.E333E 0.23 TCGA-FW-A3R5-06 13 29599939 29599939 C T MTUS2 Silent p.L378L 0.19 TCGA-FW-A3R5-06 13 29600079 29600079 C T MTUS2 Missense_Mutation p.S425L 0.38 deleterious(0.05) benign(0.021) TCGA-FW-A3R5-06 13 29600269 29600269 G A MTUS2 Silent p.E488E 0.26 TCGA-FW-A3R5-06 13 29600924 29600924 G A MTUS2 Missense_Mutation p.E707K 0.38 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 13 29608128 29608128 G A MTUS2 Missense_Mutation p.G781E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 30351346 30351346 G A UBL3 Missense_Mutation p.P28S 0.10 tolerated(0.11) benign(0.043) TCGA-FW-A3R5-06 13 30801654 30801654 G A KATNAL1 Missense_Mutation p.P348S 0.10 tolerated(0.16) possibly_damaging(0.513) TCGA-FW-A3R5-06 13 30854256 30854256 T A KATNAL1 Missense_Mutation p.Q89H 0.29 tolerated(0.73) benign(0.002) TCGA-FW-A3R5-06 13 31232685 31232685 C T USPL1 Missense_Mutation p.P824L 0.26 tolerated(0.22) benign(0.013) TCGA-FW-A3R5-06 13 31318223 31318223 G A ALOX5AP Missense_Mutation p.E33K 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-FW-A3R5-06 13 31318246 31318246 G A ALOX5AP Silent p.R40R 0.16 TCGA-FW-A3R5-06 13 31495738 31495738 G A MEDAG Missense_Mutation p.G181E 0.29 tolerated(0.13) probably_damaging(0.999) TCGA-FW-A3R5-06 13 31498636 31498636 G A MEDAG 3'UTR 0.31 TCGA-FW-A3R5-06 13 31531050 31531050 G A TEX26 Missense_Mutation p.G118E 0.24 tolerated(0.46) benign(0) TCGA-FW-A3R5-06 13 31835147 31835147 C T B3GALTL Missense_Mutation p.S175F 0.19 tolerated(0.19) benign(0.057) TCGA-FW-A3R5-06 13 32332505 32332505 G A RXFP2 Missense_Mutation p.D69N 0.26 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 13 32355867 32355867 C T RXFP2 Missense_Mutation p.S282L 0.09 tolerated(0.1) benign(0.098) TCGA-FW-A3R5-06 13 32376538 32376538 C T RXFP2 Missense_Mutation p.S754F 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 13 32526950 32526950 C T EEF1DP3 RNA 0.27 TCGA-FW-A3R5-06 13 32698944 32698944 C T FRY Silent p.P216P 0.08 TCGA-FW-A3R5-06 13 32705812 32705812 C T FRY Silent p.F240F 0.16 TCGA-FW-A3R5-06 13 32752402 32752402 G A FRY Missense_Mutation p.S837N 0.09 tolerated(0.07) probably_damaging(0.978) TCGA-FW-A3R5-06 13 32752500 32752500 C T FRY Missense_Mutation p.P870S 0.25 tolerated(0.15) benign(0.034) TCGA-FW-A3R5-06 13 32752501 32752501 C T FRY Missense_Mutation p.P870L 0.24 deleterious(0.03) benign(0.216) TCGA-FW-A3R5-06 13 32792919 32792919 C T FRY Silent p.L1572L 0.17 TCGA-FW-A3R5-06 13 32800019 32800019 C T FRY Missense_Mutation p.S1705F 0.34 tolerated(0.31) benign(0.035) TCGA-FW-A3R5-06 13 32810233 32810233 C T FRY Missense_Mutation p.L1912F 0.18 deleterious(0.01) benign(0.26) TCGA-FW-A3R5-06 13 32811801 32811801 C T FRY Silent p.S2032S 0.20 TCGA-FW-A3R5-06 13 32812098 32812098 C T FRY Silent p.S2131S 0.17 TCGA-FW-A3R5-06 13 32813968 32813968 C T FRY Missense_Mutation p.H2213Y 0.16 tolerated(0.33) probably_damaging(0.985) TCGA-FW-A3R5-06 13 32818262 32818262 C T FRY Silent p.V2257V 0.22 TCGA-FW-A3R5-06 13 32821520 32821520 C T FRY Missense_Mutation p.L2297F 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 13 32868615 32868615 C T FRY Silent p.T2897T 0.26 TCGA-FW-A3R5-06 13 32907432 32907432 C T BRCA2 Missense_Mutation p.P606L 0.24 tolerated(0.07) benign(0.003) TCGA-FW-A3R5-06 13 32913745 32913745 C T BRCA2 Silent p.Y1751Y 0.32 TCGA-FW-A3R5-06 13 32913746 32913746 C T BRCA2 Missense_Mutation p.H1752Y 0.33 tolerated(0.12) benign(0.022) TCGA-FW-A3R5-06 13 32972621 32972621 C T BRCA2 Missense_Mutation p.P3324L 0.28 deleterious(0.02) probably_damaging(0.97) TCGA-FW-A3R5-06 13 33016598 33016598 G A N4BP2L2 Silent p.S692S 0.24 TCGA-FW-A3R5-06 13 33327494 33327494 G A PDS5B Missense_Mutation p.V921M 0.30 tolerated(0.26) benign(0.149) TCGA-FW-A3R5-06 13 33590868 33590868 C T KL Missense_Mutation p.P97L 0.21 tolerated(0.75) benign(0.005) TCGA-FW-A3R5-06 13 33591242 33591242 C T KL Missense_Mutation p.L222F 0.11 tolerated(1) benign(0.017) TCGA-FW-A3R5-06 13 33628011 33628011 C T KL Silent p.T309T 0.23 TCGA-FW-A3R5-06 13 33635089 33635089 G A KL Missense_Mutation p.E625K 0.14 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 13 33635294 33635294 G A KL Missense_Mutation p.R693K 0.09 tolerated(0.54) benign(0.014) TCGA-FW-A3R5-06 13 33635402 33635402 C T KL Missense_Mutation p.A729V 0.09 tolerated(0.06) possibly_damaging(0.693) TCGA-FW-A3R5-06 13 33700343 33700343 G A STARD13 Missense_Mutation p.P653S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 33703274 33703274 G A STARD13 Missense_Mutation p.H514Y 0.26 deleterious(0.01) benign(0.065) TCGA-FW-A3R5-06 13 33703677 33703677 C T STARD13 Silent p.G379G 0.17 TCGA-FW-A3R5-06 13 33704144 33704144 C T STARD13 Missense_Mutation p.D224N 0.34 tolerated(0.21) benign(0.367) TCGA-FW-A3R5-06 13 34409298 34409298 C T RFC3 Missense_Mutation p.R275C 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 35619167 35619167 G A NBEA Missense_Mutation p.G204R 0.21 deleterious(0) possibly_damaging(0.842) TCGA-FW-A3R5-06 13 35644168 35644168 C T NBEA Nonsense_Mutation p.Q455* 0.42 TCGA-FW-A3R5-06 13 35716442 35716442 C T NBEA Silent p.F791F 0.22 TCGA-FW-A3R5-06 13 35756549 35756549 C T NBEA Missense_Mutation p.S1572L 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 13 36049679 36049679 C T MAB21L1 Silent p.R199R 0.19 TCGA-FW-A3R5-06 13 36129141 36129141 C T NBEA Missense_Mutation p.T2275I 0.32 deleterious(0) benign(0.101) TCGA-FW-A3R5-06 13 36158063 36158063 C T NBEA Missense_Mutation p.A2355V 0.18 deleterious(0.04) benign(0.243) TCGA-FW-A3R5-06 13 36167443 36167443 C T NBEA Intron 0.43 TCGA-FW-A3R5-06 13 36241637 36241637 G A NBEA Missense_Mutation p.R2843Q 0.27 tolerated(0.26) benign(0.259) TCGA-FW-A3R5-06 13 36348748 36348748 G A DCLK1 3'UTR 0.38 TCGA-FW-A3R5-06 13 36348818 36348818 C T DCLK1 Silent p.R717R 0.25 TCGA-FW-A3R5-06 13 36402445 36402445 C T DCLK1 Splice_Site p.X410_splice 0.32 TCGA-FW-A3R5-06 13 36776042 36776042 C T SOHLH2 Silent p.E156E 0.28 TCGA-FW-A3R5-06 13 36788653 36788653 G A SOHLH2 Intron 0.36 TCGA-FW-A3R5-06 13 37007241 37007241 C T CCNA1 Silent p.A60A 0.13 TCGA-FW-A3R5-06 13 37269565 37269565 G A SERTM1 3'UTR 0.33 TCGA-FW-A3R5-06 13 37453613 37453613 G A SMAD9 Missense_Mutation p.P72S 0.17 tolerated(0.06) probably_damaging(0.911) TCGA-FW-A3R5-06 13 37679361 37679361 G A CSNK1A1L Silent p.L11L 0.30 TCGA-FW-A3R5-06 13 38137471 38137471 C T POSTN Silent p.%3D 0.32 TCGA-FW-A3R5-06 13 38144728 38144728 C T POSTN Missense_Mutation p.R753Q 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.669) TCGA-FW-A3R5-06 13 38156645 38156645 G A POSTN Missense_Mutation p.T417I 0.22 tolerated(0.24) benign(0.1) TCGA-FW-A3R5-06 13 38211624 38211624 C T TRPC4 Missense_Mutation p.E789K 0.29 tolerated(0.73) benign(0.065) TCGA-FW-A3R5-06 13 38211639 38211639 C T TRPC4 Missense_Mutation p.E784K 0.21 tolerated(0.14) benign(0.341) TCGA-FW-A3R5-06 13 38211735 38211735 G A TRPC4 Missense_Mutation p.R752C 0.24 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 13 38237609 38237609 C T TRPC4 Silent p.T544T 0.24 TCGA-FW-A3R5-06 13 38237701 38237701 G A TRPC4 Silent p.L514L 0.28 TCGA-FW-A3R5-06 13 38357230 38357230 C T TRPC4 Missense_Mutation p.E81K 0.31 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 13 39263555 39263555 C T FREM2 Missense_Mutation p.R692C 0.23 deleterious(0.01) possibly_damaging(0.613) TCGA-FW-A3R5-06 13 39263760 39263760 C T FREM2 Missense_Mutation p.T760I 0.24 tolerated(0.1) benign(0.005) TCGA-FW-A3R5-06 13 39265290 39265290 C T FREM2 Missense_Mutation p.S1270F 0.29 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 13 39265901 39265901 C T FREM2 Nonsense_Mutation p.Q1474* 0.25 TCGA-FW-A3R5-06 13 39358846 39358846 G A FREM2 Missense_Mutation p.E1974K 0.36 deleterious(0.02) benign(0.015) TCGA-FW-A3R5-06 13 39425938 39425938 C T FREM2 Silent p.S2286S 0.27 TCGA-FW-A3R5-06 13 39425979 39425979 G A FREM2 Missense_Mutation p.G2300E 0.27 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 13 39432079 39432079 C T FREM2 Missense_Mutation p.P2375L 0.18 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 13 39447062 39447062 G A FREM2 Missense_Mutation p.E2723K 0.24 deleterious(0.03) possibly_damaging(0.628) TCGA-FW-A3R5-06 13 39452309 39452309 C T FREM2 Nonsense_Mutation p.Q2904* 0.21 TCGA-FW-A3R5-06 13 39454590 39454590 C T FREM2 Missense_Mutation p.P3059L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-FW-A3R5-06 13 39542580 39542580 G A STOML3 Missense_Mutation p.S203F 0.27 deleterious(0) possibly_damaging(0.839) TCGA-FW-A3R5-06 13 39597240 39597240 G A PROSER1 Missense_Mutation p.P198S 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 13 39602432 39602432 G A PROSER1 Missense_Mutation p.R101C 0.34 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 13 40239278 40239278 C T COG6 Missense_Mutation p.L139F 0.27 deleterious(0.05) possibly_damaging(0.585) TCGA-FW-A3R5-06 13 41134284 41134284 A C FOXO1 Missense_Mutation p.S448R 0.34 tolerated(0.05) benign(0.198) TCGA-FW-A3R5-06 13 41331094 41331094 G A MRPS31 Missense_Mutation p.R219C 0.25 deleterious(0.04) possibly_damaging(0.526) TCGA-FW-A3R5-06 13 41379284 41379284 C T SLC25A15 Silent p.F115F 0.09 TCGA-FW-A3R5-06 13 41508052 41508052 G A ELF1 Missense_Mutation p.P457S 0.08 tolerated(0.22) probably_damaging(0.999) TCGA-FW-A3R5-06 13 41814411 41814411 G A MTRF1 Missense_Mutation p.P286S 0.23 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 13 41826864 41826864 C T MTRF1 Missense_Mutation p.R205Q 0.21 tolerated(0.22) possibly_damaging(0.544) TCGA-FW-A3R5-06 13 42185719 42185719 G A VWA8 Nonsense_Mutation p.Q1624* 0.21 TCGA-FW-A3R5-06 13 42295569 42295569 G A VWA8 Silent p.D967D 0.27 TCGA-FW-A3R5-06 13 42306227 42306227 C T VWA8 Missense_Mutation p.D831N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 13 42875928 42875928 C T AKAP11 Missense_Mutation p.H1016Y 0.20 tolerated(0.51) benign(0.005) TCGA-FW-A3R5-06 13 43181040 43181040 C T TNFSF11 Nonsense_Mutation p.R314* 0.30 TCGA-FW-A3R5-06 13 43463358 43463358 C T EPSTI1 Silent p.S323S 0.32 TCGA-FW-A3R5-06 13 43788174 43788174 C T ENOX1 Silent p.L628L 0.24 TCGA-FW-A3R5-06 13 43788217 43788217 G A ENOX1 Missense_Mutation p.P614L 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 13 43872552 43872552 C T ENOX1 Missense_Mutation p.R459Q 0.27 tolerated(0.05) benign(0.437) TCGA-FW-A3R5-06 13 43872643 43872643 G A ENOX1 Silent p.L429L 0.30 TCGA-FW-A3R5-06 13 43896592 43896592 C T ENOX1 Missense_Mutation p.E397K 0.32 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 13 43918846 43918846 G A ENOX1 Silent p.S288S 0.15 TCGA-FW-A3R5-06 13 43930230 43930230 C T ENOX1 Silent p.V216V 0.21 TCGA-FW-A3R5-06 13 44464388 44464388 C T LACC1 Silent p.G424G 0.23 TCGA-FW-A3R5-06 13 45149450 45149450 G A TSC22D1 Missense_Mutation p.P254L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 13 45563333 45563333 G A NUFIP1 Missense_Mutation p.P80L 0.37 deleterious_low_confidence(0) benign(0.314) TCGA-FW-A3R5-06 13 45563691 45563691 G A GPALPP1 5'Flank 0.35 TCGA-FW-A3R5-06 13 45580398 45580398 C T GPALPP1 Missense_Mutation p.L95F 0.20 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 13 45725907 45725907 C T GTF2F2 Missense_Mutation p.P82L 0.26 tolerated(0.07) benign(0.358) TCGA-FW-A3R5-06 13 45768148 45768148 C T KCTD4 Silent p.E185E 0.32 TCGA-FW-A3R5-06 13 46276488 46276488 G A SPERT 5'UTR 0.31 TCGA-FW-A3R5-06 13 46287520 46287520 G A SPERT Silent p.R120R 0.27 TCGA-FW-A3R5-06 13 46358047 46358047 T A SIAH3 Missense_Mutation p.E94V 0.31 deleterious(0) possibly_damaging(0.773) TCGA-FW-A3R5-06 13 46563104 46563104 G A ZC3H13 Missense_Mutation p.S358F 0.26 unknown(0) TCGA-FW-A3R5-06 13 46937265 46937265 C T KIAA0226L Missense_Mutation p.E304K 0.17 tolerated(0.13) benign(0.016) TCGA-FW-A3R5-06 13 46942907 46942907 G A KIAA0226L Silent p.F193F 0.25 TCGA-FW-A3R5-06 13 46946124 46946124 C T KIAA0226L Missense_Mutation p.D163N 0.21 deleterious(0.04) benign(0.215) TCGA-FW-A3R5-06 13 46946318 46946318 G A KIAA0226L Missense_Mutation p.S98F 0.32 deleterious(0.02) possibly_damaging(0.729) TCGA-FW-A3R5-06 13 46946496 46946496 G A KIAA0226L Missense_Mutation p.P39S 0.21 tolerated(0.65) benign(0.01) TCGA-FW-A3R5-06 13 47012087 47012087 C T PPP1R2P4 RNA 0.55 TCGA-FW-A3R5-06 13 47260154 47260154 C T LRCH1 Missense_Mutation p.P267L 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 47286726 47286726 C T LRCH1 Nonsense_Mutation p.R550* 0.32 TCGA-FW-A3R5-06 13 47345467 47345467 G A ESD 3'UTR 0.24 TCGA-FW-A3R5-06 13 47355713 47355713 G A ESD Missense_Mutation p.P140L 0.25 tolerated(0.14) benign(0.029) TCGA-FW-A3R5-06 13 48571090 48571090 G A SUCLA2 Silent p.L53L 0.34 TCGA-FW-A3R5-06 13 49281254 49281254 G A CYSLTR2 Missense_Mutation p.G101S 0.34 tolerated(0.1) benign(0.284) TCGA-FW-A3R5-06 13 49281283 49281283 C T CYSLTR2 Silent p.A110A 0.38 TCGA-FW-A3R5-06 13 49281892 49281892 G A CYSLTR2 Silent p.K313K 0.34 TCGA-FW-A3R5-06 13 49742868 49742868 C T FNDC3A Missense_Mutation p.S386L 0.25 deleterious(0) possibly_damaging(0.856) TCGA-FW-A3R5-06 13 49776046 49776046 C T FNDC3A Missense_Mutation p.P1033L 0.24 deleterious(0.01) possibly_damaging(0.798) TCGA-FW-A3R5-06 13 49796481 49796481 G A MLNR Missense_Mutation p.E403K 0.19 deleterious(0.04) benign(0.228) TCGA-FW-A3R5-06 13 50115837 50115837 G A RCBTB1 Silent p.V433V 0.39 TCGA-FW-A3R5-06 13 50505152 50505152 A G SPRYD7 Splice_Site p.X75_splice 0.22 TCGA-FW-A3R5-06 13 51522143 51522143 C A RNASEH2B Missense_Mutation p.H213N 0.19 deleterious(0) possibly_damaging(0.892) TCGA-FW-A3R5-06 13 51943380 51943380 G A INTS6 Missense_Mutation p.S724L 0.12 tolerated(0.26) benign(0.039) TCGA-FW-A3R5-06 13 51948359 51948359 G A INTS6 Missense_Mutation p.L697F 0.27 tolerated(0.26) benign(0.001) TCGA-FW-A3R5-06 13 52439538 52439538 G A CCDC70 Silent p.L8L 0.35 TCGA-FW-A3R5-06 13 52439631 52439631 G A CCDC70 Silent p.K39K 0.22 TCGA-FW-A3R5-06 13 52439799 52439799 A G CCDC70 Silent p.E95E 0.11 TCGA-FW-A3R5-06 13 52509050 52509050 G A ATP7B Missense_Mutation p.P1414S 0.28 tolerated(0.1) benign(0.013) TCGA-FW-A3R5-06 13 52520529 52520529 G A ATP7B Missense_Mutation p.P984L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 52539139 52539139 G A ATP7B Missense_Mutation p.H580Y 0.35 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 13 52549277 52549277 G A ATP7B Missense_Mutation p.R27C 0.25 tolerated_low_confidence(0.18) benign(0.001) TCGA-FW-A3R5-06 13 52604148 52604148 C T UTP14C Missense_Mutation p.S403F 0.24 deleterious(0) possibly_damaging(0.877) TCGA-FW-A3R5-06 13 52604519 52604519 C T UTP14C Missense_Mutation p.P527S 0.33 tolerated(0.21) benign(0.032) TCGA-FW-A3R5-06 13 52660491 52660491 C T NEK5 Nonsense_Mutation p.W467* 0.18 TCGA-FW-A3R5-06 13 52682524 52682524 G A NEK5 Nonsense_Mutation p.R162* 0.34 TCGA-FW-A3R5-06 13 52718862 52718862 G A NEK3 Silent p.I256I 0.20 TCGA-FW-A3R5-06 13 52952628 52952628 C T THSD1 Missense_Mutation p.G493S 0.23 tolerated(0.16) benign(0.056) TCGA-FW-A3R5-06 13 53286957 53286957 C T LECT1 Nonsense_Mutation p.W172* 0.28 TCGA-FW-A3R5-06 13 53418996 53418996 C T PCDH8 Missense_Mutation p.G971E 0.20 tolerated(0.21) possibly_damaging(0.841) TCGA-FW-A3R5-06 13 53418997 53418997 C T PCDH8 Missense_Mutation p.G971R 0.21 tolerated(1) benign(0.05) TCGA-FW-A3R5-06 13 53420603 53420603 C T PCDH8 Missense_Mutation p.E657K 0.34 tolerated(0.08) benign(0.046) TCGA-FW-A3R5-06 13 53420813 53420813 G A PCDH8 Missense_Mutation p.P587S 0.21 deleterious(0) possibly_damaging(0.657) TCGA-FW-A3R5-06 13 53422606 53422606 G A PCDH8 5'UTR 0.24 TCGA-FW-A3R5-06 13 53603060 53603060 C T OLFM4 Missense_Mutation p.P30L 0.19 tolerated_low_confidence(0.28) unknown(0) TCGA-FW-A3R5-06 13 58206895 58206895 C T PCDH17 Missense_Mutation p.P72L 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 13 58207025 58207025 C T PCDH17 Silent p.I115I 0.34 TCGA-FW-A3R5-06 13 58207133 58207133 C T PCDH17 Silent p.F151F 0.26 TCGA-FW-A3R5-06 13 58207590 58207590 C T PCDH17 Missense_Mutation p.R304C 0.29 deleterious(0) possibly_damaging(0.849) TCGA-FW-A3R5-06 13 58207767 58207767 G A PCDH17 Missense_Mutation p.E363K 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 58208270 58208270 G A PCDH17 Silent p.T530T 0.18 TCGA-FW-A3R5-06 13 58208804 58208804 C T PCDH17 Silent p.L708L 0.27 TCGA-FW-A3R5-06 13 58208835 58208835 C T PCDH17 Missense_Mutation p.L719F 0.22 tolerated(0.77) probably_damaging(0.999) TCGA-FW-A3R5-06 13 58209029 58209029 G A PCDH17 Missense_Mutation p.M783I 0.13 deleterious(0.03) benign(0.119) TCGA-FW-A3R5-06 13 58209161 58209161 G A PCDH17 Silent p.Q827Q 0.28 TCGA-FW-A3R5-06 13 58240849 58240849 G A PCDH17 Silent p.G893G 0.16 TCGA-FW-A3R5-06 13 58299207 58299207 G A PCDH17 Missense_Mutation p.D1087N 0.27 deleterious_low_confidence(0.02) benign(0.212) TCGA-FW-A3R5-06 13 58299274 58299274 G T PCDH17 Missense_Mutation p.R1109L 0.20 deleterious_low_confidence(0.01) benign(0.082) TCGA-FW-A3R5-06 13 58299276 58299276 G A PCDH17 Missense_Mutation p.D1110N 0.23 deleterious_low_confidence(0.01) benign(0.212) TCGA-FW-A3R5-06 13 58299400 58299400 G A PCDH17 Missense_Mutation p.G1151E 0.08 tolerated_low_confidence(0.39) benign(0.152) TCGA-FW-A3R5-06 13 58299405 58299405 G A PCDH17 Missense_Mutation p.D1153N 0.24 deleterious_low_confidence(0) benign(0.34) TCGA-FW-A3R5-06 13 60737753 60737753 G A DIAPH3 Missense_Mutation p.P50S 0.25 tolerated_low_confidence(1) benign(0.003) TCGA-FW-A3R5-06 13 61102816 61102816 C T TDRD3 Missense_Mutation p.P486L 0.18 tolerated(0.1) benign(0.004) TCGA-FW-A3R5-06 13 61986905 61986905 C T PCDH20 Missense_Mutation p.E443K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 13 61987410 61987410 G A PCDH20 Silent p.V274V 0.41 TCGA-FW-A3R5-06 13 61988009 61988009 C T PCDH20 Missense_Mutation p.G75R 0.15 tolerated(0.14) probably_damaging(0.981) TCGA-FW-A3R5-06 13 64321066 64321066 G A AL445989.1 Missense_Mutation p.G45S 0.28 unknown(0) TCGA-FW-A3R5-06 13 66878773 66878773 C T PCDH9 3'UTR 0.22 TCGA-FW-A3R5-06 13 66878844 66878844 C T PCDH9 Silent p.L1219L 0.23 TCGA-FW-A3R5-06 13 67205501 67205501 C T PCDH9 Missense_Mutation p.E1061K 0.40 deleterious(0.03) benign(0.108) TCGA-FW-A3R5-06 13 67801997 67801997 G A PCDH9 Silent p.I192I 0.24 TCGA-FW-A3R5-06 13 70275748 70275748 C T KLHL1 3'UTR 0.25 TCGA-FW-A3R5-06 13 70281924 70281924 C T KLHL1 Missense_Mutation p.D674N 0.19 tolerated(0.14) possibly_damaging(0.85) TCGA-FW-A3R5-06 13 70514339 70514339 C T KLHL1 Missense_Mutation p.E283K 0.32 deleterious(0.03) probably_damaging(0.992) TCGA-FW-A3R5-06 13 70535554 70535554 C T KLHL1 Missense_Mutation p.D235N 0.11 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 13 70681510 70681510 G A KLHL1 Missense_Mutation p.P108S 0.35 tolerated_low_confidence(0.3) benign(0.001) TCGA-FW-A3R5-06 13 72014723 72014723 C T DACH1 3'UTR 0.26 TCGA-FW-A3R5-06 13 72049908 72049908 C T DACH1 Silent p.T650T 0.30 TCGA-FW-A3R5-06 13 72049968 72049968 C T DACH1 Silent p.K630K 0.16 TCGA-FW-A3R5-06 13 72063173 72063173 G A DACH1 Missense_Mutation p.P562S 0.23 possibly_damaging(0.804) TCGA-FW-A3R5-06 13 73346025 73346025 G A DIS3 Missense_Mutation p.H505Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 13 73636582 73636582 C T KLF5 Missense_Mutation p.P282L 0.37 tolerated(0.14) benign(0.081) TCGA-FW-A3R5-06 13 73636695 73636695 C T KLF5 Nonsense_Mutation p.Q320* 0.20 TCGA-FW-A3R5-06 13 75869049 75869049 G A TBC1D4 Missense_Mutation p.P1086L 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 75898440 75898440 G A TBC1D4 Missense_Mutation p.P711S 0.23 tolerated(0.07) benign(0.052) TCGA-FW-A3R5-06 13 75900467 75900467 G A TBC1D4 Silent p.S633S 0.25 TCGA-FW-A3R5-06 13 75900468 75900468 G A TBC1D4 Missense_Mutation p.S633F 0.25 deleterious(0) possibly_damaging(0.691) TCGA-FW-A3R5-06 13 76055823 76055823 G A TBC1D4 Silent p.G27G 0.21 TCGA-FW-A3R5-06 13 76381981 76381981 G A LMO7 Missense_Mutation p.R288Q 0.08 deleterious(0) probably_damaging(0.941) TCGA-FW-A3R5-06 13 76382131 76382131 G A LMO7 Missense_Mutation p.S338N 0.31 tolerated(0.13) benign(0.142) TCGA-FW-A3R5-06 13 76382154 76382154 C T LMO7 Missense_Mutation p.P346S 0.10 deleterious(0.01) benign(0.244) TCGA-FW-A3R5-06 13 76395319 76395319 C T LMO7 Silent p.S505S 0.27 TCGA-FW-A3R5-06 13 76395507 76395507 G A LMO7 Missense_Mutation p.R568K 0.27 tolerated(0.26) benign(0.071) TCGA-FW-A3R5-06 13 76397896 76397896 C T LMO7 Nonsense_Mutation p.Q713* 0.29 TCGA-FW-A3R5-06 13 76397922 76397922 C T LMO7 Silent p.A721A 0.10 TCGA-FW-A3R5-06 13 76412312 76412312 G A LMO7 Missense_Mutation p.R911Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 13 76414572 76414572 C T LMO7 Nonsense_Mutation p.Q942* 0.31 TCGA-FW-A3R5-06 13 76417042 76417042 C T LMO7 Missense_Mutation p.P1130S 0.28 tolerated(0.18) benign(0.009) TCGA-FW-A3R5-06 13 76427474 76427474 G A LMO7 Silent p.P1304P 0.19 TCGA-FW-A3R5-06 13 77642739 77642739 G A MYCBP2 Silent p.F4006F 0.26 TCGA-FW-A3R5-06 13 77748454 77748454 G A MYCBP2 Silent p.L1843L 0.20 TCGA-FW-A3R5-06 13 77779516 77779516 G A MYCBP2 Missense_Mutation p.H1202Y 0.31 probably_damaging(0.948) TCGA-FW-A3R5-06 13 77799640 77799640 G A MYCBP2 Silent p.Y891Y 0.30 TCGA-FW-A3R5-06 13 78335025 78335025 C T SLAIN1 Nonsense_Mutation p.R329* 0.25 TCGA-FW-A3R5-06 13 79190701 79190701 G A RNF219 Nonsense_Mutation p.Q399* 0.24 TCGA-FW-A3R5-06 13 80911411 80911411 G A SPRY2 Missense_Mutation p.P144S 0.26 tolerated(0.78) benign(0.014) TCGA-FW-A3R5-06 13 84453654 84453654 G A SLITRK1 Silent p.S663S 0.12 TCGA-FW-A3R5-06 13 84454371 84454371 G A SLITRK1 Silent p.D424D 0.10 TCGA-FW-A3R5-06 13 84454440 84454440 G A SLITRK1 Silent p.L401L 0.25 TCGA-FW-A3R5-06 13 84454619 84454619 G A SLITRK1 Missense_Mutation p.P342S 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 84454751 84454751 G A SLITRK1 Missense_Mutation p.H298Y 0.24 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 13 84455093 84455093 G A SLITRK1 Missense_Mutation p.L184F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 13 84455121 84455121 G A SLITRK1 Silent p.F174F 0.24 TCGA-FW-A3R5-06 13 84455470 84455470 G A SLITRK1 Missense_Mutation p.S58F 0.18 tolerated(0.76) benign(0.127) TCGA-FW-A3R5-06 13 84455670 84455670 C T SLITRK1 5'UTR 0.28 TCGA-FW-A3R5-06 13 86368424 86368424 C T SLITRK6 Silent p.T740T 0.21 TCGA-FW-A3R5-06 13 86368848 86368848 C T SLITRK6 Missense_Mutation p.R599Q 0.25 tolerated(0.6) benign(0.003) TCGA-FW-A3R5-06 13 86370031 86370031 C T SLITRK6 Missense_Mutation p.E205K 0.16 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 13 86370307 86370307 G A SLITRK6 Missense_Mutation p.L113F 0.34 tolerated(0.51) benign(0.038) TCGA-FW-A3R5-06 13 86370529 86370529 C T SLITRK6 Missense_Mutation p.E39K 0.18 deleterious(0.02) benign(0.11) TCGA-FW-A3R5-06 13 88328747 88328747 C T SLITRK5 Silent p.S368S 0.18 TCGA-FW-A3R5-06 13 88328875 88328875 C T SLITRK5 Missense_Mutation p.P411L 0.30 deleterious(0) possibly_damaging(0.876) TCGA-FW-A3R5-06 13 92345534 92345534 C T GPC5 Missense_Mutation p.S140L 0.48 tolerated(0.66) benign(0.426) TCGA-FW-A3R5-06 13 92345675 92345675 C T GPC5 Missense_Mutation p.S187F 0.42 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 13 92346066 92346066 G A GPC5 Silent p.L317L 0.22 TCGA-FW-A3R5-06 13 92560267 92560267 C T GPC5 Missense_Mutation p.P453S 0.20 deleterious(0.03) probably_damaging(0.933) TCGA-FW-A3R5-06 13 92797198 92797198 G A GPC5 Missense_Mutation p.G506E 0.42 deleterious(0.01) possibly_damaging(0.71) TCGA-FW-A3R5-06 13 93879776 93879776 G A GPC6 Missense_Mutation p.A23T 0.24 tolerated(0.07) possibly_damaging(0.787) TCGA-FW-A3R5-06 13 95092141 95092141 G A DCT 3'UTR 0.25 TCGA-FW-A3R5-06 13 96205054 96205054 C T CLDN10 Missense_Mutation p.S16L 0.27 tolerated(0.25) benign(0.006) TCGA-FW-A3R5-06 13 96239829 96239829 C T DZIP1 Missense_Mutation p.E728K 0.28 tolerated(0.12) benign(0.011) TCGA-FW-A3R5-06 13 96239919 96239919 G A DZIP1 Missense_Mutation p.P698S 0.29 tolerated(0.05) possibly_damaging(0.821) TCGA-FW-A3R5-06 13 96264406 96264406 C T DZIP1 Missense_Mutation p.R400Q 0.27 tolerated(0.34) benign(0.007) TCGA-FW-A3R5-06 13 96361519 96361519 C T DNAJC3 Missense_Mutation p.L41F 0.25 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 13 96555182 96555182 G A UGGT2 Missense_Mutation p.L810F 0.10 tolerated(0.05) benign(0.384) TCGA-FW-A3R5-06 13 97484836 97484836 C T HS6ST3 Missense_Mutation p.S267F 0.26 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 13 97484999 97484999 C T HS6ST3 Silent p.G321G 0.28 TCGA-FW-A3R5-06 13 97485045 97485045 C T HS6ST3 Silent p.L337L 0.25 TCGA-FW-A3R5-06 13 97485093 97485093 C T HS6ST3 Missense_Mutation p.L353F 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 97485261 97485261 G A HS6ST3 Missense_Mutation p.E409K 0.28 tolerated(0.09) probably_damaging(0.918) TCGA-FW-A3R5-06 13 97639219 97639219 G A OXGR1 Silent p.I265I 0.22 TCGA-FW-A3R5-06 13 98018783 98018783 C T MBNL2 Silent p.F355F 0.18 TCGA-FW-A3R5-06 13 98666301 98666301 C T IPO5 Nonsense_Mutation p.R738* 0.22 TCGA-FW-A3R5-06 13 98674131 98674131 C T IPO5 3'UTR 0.31 TCGA-FW-A3R5-06 13 99378490 99378490 G A SLC15A1 Silent p.F44F 0.25 TCGA-FW-A3R5-06 13 99446979 99446979 C T DOCK9 3'UTR 0.25 TCGA-FW-A3R5-06 13 99582506 99582506 G A DOCK9 Silent p.A83A 0.33 TCGA-FW-A3R5-06 13 99947438 99947438 C T GPR183 Missense_Mutation p.R321K 0.13 tolerated(1) benign(0) TCGA-FW-A3R5-06 13 99948140 99948140 C T GPR183 Missense_Mutation p.R87Q 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 13 99992680 99992680 C T UBAC2 Missense_Mutation p.S223F 0.10 deleterious(0.01) benign(0.304) TCGA-FW-A3R5-06 14 100118719 100118719 G A HHIPL1 Silent p.L138L 0.16 TCGA-FW-A3R5-06 14 100123421 100123421 C T HHIPL1 Silent p.F329F 0.29 TCGA-FW-A3R5-06 14 100129237 100129237 C T HHIPL1 Silent p.N509N 0.13 TCGA-FW-A3R5-06 14 100182195 100182195 C T CYP46A1 Missense_Mutation p.R248C 0.37 tolerated(0.06) possibly_damaging(0.853) TCGA-FW-A3R5-06 14 100182497 100182497 G A CYP46A1 Missense_Mutation p.E290K 0.19 deleterious(0.02) benign(0.236) TCGA-FW-A3R5-06 14 100182517 100182517 C T CYP46A1 Silent p.F296F 0.33 TCGA-FW-A3R5-06 14 100191794 100191794 C T CYP46A1 Missense_Mutation p.R415C 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 100192536 100192536 C T CYP46A1 Silent p.F425F 0.22 TCGA-FW-A3R5-06 14 100341315 100341315 C T EML1 Missense_Mutation p.S144L 0.22 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 14 100376662 100376662 C T EML1 Silent p.I460I 0.27 TCGA-FW-A3R5-06 14 100380631 100380631 C T EML1 Missense_Mutation p.P556L 0.28 tolerated(0.4) benign(0.419) TCGA-FW-A3R5-06 14 100380924 100380924 G A EML1 Missense_Mutation p.G567R 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 100551165 100551165 C T EVL Silent p.V51V 0.10 TCGA-FW-A3R5-06 14 100563966 100563966 C T EVL Missense_Mutation p.A110V 0.13 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.29 TCGA-FW-A3R5-06 14 100615658 100615658 G A DEGS2 Missense_Mutation p.R158C 0.32 tolerated(0.12) benign(0.159) TCGA-FW-A3R5-06 14 100813129 100813129 G A WARS Silent p.F260F 0.15 TCGA-FW-A3R5-06 14 100847882 100847882 C T WDR25 Silent p.A207A 0.28 TCGA-FW-A3R5-06 14 100950384 100950384 C T WDR25 Missense_Mutation p.H342Y 0.27 tolerated(0.08) benign(0.059) TCGA-FW-A3R5-06 14 101348054 101348054 C T RTL1 Silent p.R1024R 0.21 TCGA-FW-A3R5-06 14 101348213 101348213 G A RTL1 Silent p.V971V 0.21 TCGA-FW-A3R5-06 14 101350846 101350846 C T RTL1 Missense_Mutation p.D94N 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 14 101351026 101351026 C T RTL1 Missense_Mutation p.E34K 0.32 tolerated_low_confidence(0.09) benign(0.052) TCGA-FW-A3R5-06 14 101351153 101351153 G A RTL1 5'UTR 0.19 TCGA-FW-A3R5-06 14 101405917 101405917 G A SNORD113-6 RNA 0.28 TCGA-FW-A3R5-06 14 101419695 101419695 G A SNORD114-3 RNA 0.13 TCGA-FW-A3R5-06 14 101450256 101450256 G A SNORD114-23 RNA 0.22 TCGA-FW-A3R5-06 14 101490176 101490176 G A MIR299 RNA 0.24 TCGA-FW-A3R5-06 14 101493187 101493187 C T MIR329-1 RNA 0.31 TCGA-FW-A3R5-06 14 101493518 101493518 C T MIR329-2 RNA 0.23 TCGA-FW-A3R5-06 14 101498367 101498367 A C MIR543 RNA 0.20 TCGA-FW-A3R5-06 14 101506599 101506599 C T MIR654 RNA 0.25 TCGA-FW-A3R5-06 14 101531683 101531683 G A MIR409 RNA 0.45 TCGA-FW-A3R5-06 14 102027848 102027848 C T DIO3 Silent p.A5A 0.43 TCGA-FW-A3R5-06 14 102028226 102028226 G A DIO3 Silent p.E131E 0.39 TCGA-FW-A3R5-06 14 102469297 102469297 C T DYNC1H1 Silent p.F1626F 0.33 TCGA-FW-A3R5-06 14 102470966 102470966 C T DYNC1H1 Silent p.I1665I 0.33 TCGA-FW-A3R5-06 14 102476636 102476636 C T DYNC1H1 Missense_Mutation p.S2082F 0.16 possibly_damaging(0.793) TCGA-FW-A3R5-06 14 102477166 102477166 C T DYNC1H1 Silent p.F2165F 0.18 TCGA-FW-A3R5-06 14 102494353 102494353 C T DYNC1H1 Silent p.L3115L 0.06 TCGA-FW-A3R5-06 14 102500749 102500749 C T DYNC1H1 Missense_Mutation p.L3572F 0.17 probably_damaging(1) TCGA-FW-A3R5-06 14 102508054 102508054 C T DYNC1H1 Missense_Mutation p.H4029Y 0.10 benign(0) TCGA-FW-A3R5-06 14 102548620 102548620 G A HSP90AA1 Silent p.D761D 0.29 TCGA-FW-A3R5-06 14 102802155 102802155 C T ZNF839 Silent p.L547L 0.33 TCGA-FW-A3R5-06 14 102808592 102808592 C T ZNF839 3'UTR 0.17 TCGA-FW-A3R5-06 14 102816294 102816294 C T CINP Missense_Mutation p.R148Q 0.29 tolerated(0.25) benign(0.024) TCGA-FW-A3R5-06 14 102900631 102900631 C T TECPR2 Missense_Mutation p.P493S 0.27 tolerated(0.37) benign(0.005) TCGA-FW-A3R5-06 14 102904439 102904439 C T TECPR2 Silent p.C825C 0.26 TCGA-FW-A3R5-06 14 102964006 102964006 C T TECPR2 Missense_Mutation p.P1344L 0.25 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 14 103371731 103371731 C T TRAF3 Silent p.S439S 0.37 TCGA-FW-A3R5-06 14 103396997 103396997 G A AMN Missense_Mutation p.G448R 0.35 tolerated(0.05) benign(0.439) TCGA-FW-A3R5-06 14 103410325 103410325 G A CDC42BPB Silent p.Y1437Y 0.35 TCGA-FW-A3R5-06 14 103442096 103442096 G A CDC42BPB Missense_Mutation p.L478F 0.06 tolerated(0.25) benign(0.397) TCGA-FW-A3R5-06 14 103566713 103566713 C T EXOC3L4 Silent p.L53L 0.35 TCGA-FW-A3R5-06 14 103566796 103566796 C T EXOC3L4 Silent p.S80S 0.31 TCGA-FW-A3R5-06 14 103568561 103568561 C T EXOC3L4 Silent p.T167T 0.36 TCGA-FW-A3R5-06 14 103568562 103568562 T C EXOC3L4 Missense_Mutation p.F168L 0.38 deleterious(0.05) benign(0.019) TCGA-FW-A3R5-06 14 103571339 103571339 G A EXOC3L4 Missense_Mutation p.A466T 0.24 tolerated(0.16) benign(0.297) TCGA-FW-A3R5-06 14 103599731 103599731 G A TNFAIP2 Silent p.V526V 0.20 TCGA-FW-A3R5-06 14 103599776 103599776 G A TNFAIP2 Silent p.K541K 0.28 TCGA-FW-A3R5-06 14 103601679 103601679 C T TNFAIP2 Silent p.S649S 0.30 TCGA-FW-A3R5-06 14 104026041 104026041 T C BAG5 3'UTR 0.47 TCGA-FW-A3R5-06 14 104056663 104056663 G A APOPT1 3'UTR 0.24 TCGA-FW-A3R5-06 14 104472813 104472813 C T TDRD9 Missense_Mutation p.L601F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 104472984 104472984 G A TDRD9 Silent p.A627A 0.11 TCGA-FW-A3R5-06 14 104493142 104493142 G A TDRD9 Missense_Mutation p.V1050I 0.27 tolerated(0.16) possibly_damaging(0.488) TCGA-FW-A3R5-06 14 104508525 104508525 G A TDRD9 Splice_Site p.X1325_splice 0.38 TCGA-FW-A3R5-06 14 104516006 104516006 G A TDRD9 Missense_Mutation p.E1346K 0.28 tolerated(0.59) benign(0.017) TCGA-FW-A3R5-06 14 104565220 104565220 C T ASPG Missense_Mutation p.R182W 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 104571689 104571689 G A ASPG Missense_Mutation p.E359K 0.12 deleterious(0.02) benign(0.059) TCGA-FW-A3R5-06 14 104575594 104575594 G A ASPG Missense_Mutation p.E488K 0.24 tolerated(0.87) benign(0.005) TCGA-FW-A3R5-06 14 104638985 104638985 C T KIF26A Missense_Mutation p.S467F 0.40 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 14 104640107 104640107 G A KIF26A Silent p.R644R 0.33 TCGA-FW-A3R5-06 14 104641424 104641424 G A KIF26A Missense_Mutation p.D767N 0.20 deleterious(0.02) benign(0.002) TCGA-FW-A3R5-06 14 104641701 104641701 G A KIF26A Missense_Mutation p.G859E 0.30 tolerated(0.35) benign(0.357) TCGA-FW-A3R5-06 14 104642395 104642395 C T KIF26A Silent p.A1090A 0.32 TCGA-FW-A3R5-06 14 104642755 104642755 C T KIF26A Silent p.L1210L 0.36 TCGA-FW-A3R5-06 14 104643604 104643604 C T KIF26A Silent p.P1493P 0.33 TCGA-FW-A3R5-06 14 105169497 105169497 C T INF2 Silent p.A149A 0.23 TCGA-FW-A3R5-06 14 105173304 105173304 C T INF2 Silent p.L301L 0.27 TCGA-FW-A3R5-06 14 105207212 105207212 C T ADSSL1 Silent p.F250F 0.05 TCGA-FW-A3R5-06 14 105239822 105239822 C T AKT1 Silent p.S266S 0.11 TCGA-FW-A3R5-06 14 105353206 105353206 C T CEP170B Missense_Mutation p.P877L 0.22 tolerated(0.13) benign(0.149) TCGA-FW-A3R5-06 14 105353296 105353296 C T CEP170B Missense_Mutation p.S907F 0.26 deleterious(0.01) possibly_damaging(0.789) TCGA-FW-A3R5-06 14 105396385 105396385 G A PLD4 Silent p.V220V 0.24 TCGA-FW-A3R5-06 14 105398476 105398476 G A PLD4 Missense_Mutation p.A396T 0.23 deleterious(0) probably_damaging(0.93) TCGA-FW-A3R5-06 14 105404490 105404490 G A AHNAK2 Silent p.S5766S 0.34 TCGA-FW-A3R5-06 14 105405844 105405844 A G AHNAK2 Missense_Mutation p.L5315P 0.37 benign(0.019) TCGA-FW-A3R5-06 14 105407933 105407933 C T AHNAK2 Missense_Mutation p.E4619K 0.28 benign(0.019) TCGA-FW-A3R5-06 14 105409091 105409091 C T AHNAK2 Missense_Mutation p.G4233S 0.26 probably_damaging(0.988) TCGA-FW-A3R5-06 14 105409179 105409179 C T AHNAK2 Silent p.E4203E 0.30 TCGA-FW-A3R5-06 14 105409275 105409275 G A AHNAK2 Silent p.S4171S 0.29 TCGA-FW-A3R5-06 14 105409973 105409973 C T AHNAK2 Missense_Mutation p.E3939K 0.24 benign(0.254) TCGA-FW-A3R5-06 14 105410237 105410237 G A AHNAK2 Missense_Mutation p.L3851F 0.32 probably_damaging(0.997) TCGA-FW-A3R5-06 14 105414114 105414114 C T AHNAK2 Silent p.E2558E 0.31 TCGA-FW-A3R5-06 14 105414808 105414808 G A AHNAK2 Missense_Mutation p.S2327L 0.17 benign(0.04) TCGA-FW-A3R5-06 14 105415701 105415701 C T AHNAK2 Silent p.G2029G 0.46 TCGA-FW-A3R5-06 14 105415962 105415962 C T AHNAK2 Silent p.V1942V 0.28 TCGA-FW-A3R5-06 14 105417246 105417246 G A AHNAK2 Silent p.A1514A 0.49 TCGA-FW-A3R5-06 14 105417287 105417287 G A AHNAK2 Missense_Mutation p.P1501S 0.13 probably_damaging(0.996) TCGA-FW-A3R5-06 14 105421084 105421084 C T AHNAK2 Missense_Mutation p.G235E 0.37 benign(0.091) TCGA-FW-A3R5-06 14 105421934 105421934 C T AHNAK2 Missense_Mutation p.E118K 0.30 benign(0.045) TCGA-FW-A3R5-06 14 105423001 105423001 G A AHNAK2 Missense_Mutation p.S80F 0.26 possibly_damaging(0.904) TCGA-FW-A3R5-06 14 105609479 105609479 G A JAG2 Silent p.A1090A 0.31 TCGA-FW-A3R5-06 14 105843141 105843141 C T PACS2 Missense_Mutation p.P280S 0.17 tolerated(0.37) benign(0.281) TCGA-FW-A3R5-06 14 105936526 105936526 G A MTA1 Missense_Mutation p.D708N 0.41 tolerated(0.36) benign(0.413) TCGA-FW-A3R5-06 14 105954825 105954825 G A CRIP1 Missense_Mutation p.A71T 0.23 tolerated(0.39) benign(0.003) TCGA-FW-A3R5-06 14 106053911 106053911 G A IGHA2 Missense_Mutation p.T203I 0.30 deleterious(0.01) possibly_damaging(0.826) TCGA-FW-A3R5-06 14 106054664 106054664 G A IGHA2 Silent p.V23V 0.31 TCGA-FW-A3R5-06 14 106066431 106066431 C T IGHE Missense_Mutation p.R420Q 0.25 tolerated(0.16) benign(0.002) TCGA-FW-A3R5-06 14 106091547 106091547 C T IGHG4 Missense_Mutation p.G116E 0.31 deleterious(0.01) possibly_damaging(0.703) TCGA-FW-A3R5-06 14 106091705 106091705 C T IGHG4 Missense_Mutation p.G103S 0.30 tolerated(0.71) benign(0.003) TCGA-FW-A3R5-06 14 106109697 106109697 G A IGHG2 Missense_Mutation p.P275L 0.27 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 106110258 106110258 G A IGHG2 Silent p.F120F 0.21 TCGA-FW-A3R5-06 14 106173691 106173691 G A IGHA1 Silent p.F292F 0.17 TCGA-FW-A3R5-06 14 106174793 106174793 C T IGHA1 Silent p.L70L 0.17 TCGA-FW-A3R5-06 14 106207896 106207896 C T IGHG1 Missense_Mutation p.G303R 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 14 106208133 106208133 C T IGHG1 Splice_Site p.X224_splice 0.25 TCGA-FW-A3R5-06 14 106208522 106208522 G A IGHG1 Silent p.F126F 0.37 TCGA-FW-A3R5-06 14 106307412 106307412 C T IGHD Silent p.K209K 0.29 TCGA-FW-A3R5-06 14 106311229 106311229 G A IGHD Missense_Mutation p.P112L 0.28 deleterious(0.01) benign(0.039) TCGA-FW-A3R5-06 14 106320527 106320527 G A IGHM Missense_Mutation p.T428I 0.27 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 14 106321130 106321130 C T IGHM Missense_Mutation p.E287K 0.23 tolerated(0.49) benign(0.039) TCGA-FW-A3R5-06 14 106321778 106321778 C T IGHM Silent p.G152G 0.23 TCGA-FW-A3R5-06 14 106322213 106322213 G A IGHM Silent p.S37S 0.19 TCGA-FW-A3R5-06 14 106405642 106405642 G A IGHV6-1 Missense_Mutation p.P111L 0.33 deleterious(0.01) benign(0.006) TCGA-FW-A3R5-06 14 106478215 106478215 G A IGHV4-4 Silent p.S81S 0.09 TCGA-FW-A3R5-06 14 106478263 106478263 C T IGHV4-4 Silent p.E65E 0.17 TCGA-FW-A3R5-06 14 106494237 106494237 C T IGHV2-5 Silent p.K85K 0.13 TCGA-FW-A3R5-06 14 106518487 106518487 G A IGHV3-7 Silent p.T88T 0.30 TCGA-FW-A3R5-06 14 106539304 106539304 C T IGHV1-8 Silent p.K42K 0.64 TCGA-FW-A3R5-06 14 106610738 106610738 G A IGHV3-15 Missense_Mutation p.A12V 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.697) TCGA-FW-A3R5-06 14 106641605 106641605 C T IGHV1-18 Silent p.R103R 0.35 TCGA-FW-A3R5-06 14 106692098 106692098 G A IGHV3-21 Silent p.F9F 0.25 TCGA-FW-A3R5-06 14 106692191 106692191 C T IGHV3-21 5'UTR 0.24 TCGA-FW-A3R5-06 14 106725366 106725366 C T IGHV3-23 Silent p.K62K 0.09 TCGA-FW-A3R5-06 14 106725467 106725467 C T IGHV3-23 Missense_Mutation p.G29S 0.20 deleterious_low_confidence(0.01) benign(0.17) TCGA-FW-A3R5-06 14 106757818 106757818 C T IGHV2-26 Silent p.G63G 0.31 TCGA-FW-A3R5-06 14 106780570 106780570 G A IGHV4-28 Silent p.F98F 0.24 TCGA-FW-A3R5-06 14 106791008 106791008 C T IGHV3-30 Silent p.A116A 0.12 TCGA-FW-A3R5-06 14 106815979 106815979 G A IGHV3-33 Nonsense_Mutation p.Q32* 0.18 TCGA-FW-A3R5-06 14 106829885 106829885 G A IGHV4-34 Silent p.S26S 0.31 TCGA-FW-A3R5-06 14 106845368 106845368 C T IGHV3-35 Silent p.T102T 0.19 TCGA-FW-A3R5-06 14 106926359 106926359 C T IGHV3-43 Silent p.G61G 0.30 TCGA-FW-A3R5-06 14 106963149 106963149 C T IGHV1-45 Missense_Mutation p.G45R 0.33 deleterious(0.02) possibly_damaging(0.887) TCGA-FW-A3R5-06 14 107013088 107013088 G A IGHV3-49 Silent p.F69F 0.29 TCGA-FW-A3R5-06 14 107013108 107013108 C T IGHV3-49 Missense_Mutation p.G63R 0.19 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-FW-A3R5-06 14 107013176 107013176 G A IGHV3-49 Missense_Mutation p.S40F 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 14 107013381 107013381 C T IGHV3-49 Missense_Mutation p.S6N 0.14 tolerated_low_confidence(0.19) possibly_damaging(0.555) TCGA-FW-A3R5-06 14 107034732 107034732 C T IGHV5-51 Silent p.A116A 0.10 TCGA-FW-A3R5-06 14 107034953 107034953 C T IGHV5-51 Missense_Mutation p.G43S 0.24 deleterious(0.02) benign(0.003) TCGA-FW-A3R5-06 14 107048762 107048762 G A IGHV3-53 Silent p.F86F 0.12 TCGA-FW-A3R5-06 14 107048774 107048774 C T IGHV3-53 Silent p.V82V 0.12 TCGA-FW-A3R5-06 14 107078517 107078517 C T IGHV1-58 Nonsense_Mutation p.W69* 0.14 TCGA-FW-A3R5-06 14 107083658 107083658 G A IGHV4-59 Silent p.L10L 0.21 TCGA-FW-A3R5-06 14 107131123 107131123 G A IGHV3-66 Silent p.F86F 0.11 TCGA-FW-A3R5-06 14 107131135 107131135 C T IGHV3-66 Silent p.V82V 0.08 TCGA-FW-A3R5-06 14 107178880 107178880 C T IGHV2-70 Silent p.V99V 0.29 TCGA-FW-A3R5-06 14 107211030 107211030 C T IGHV3-73 Missense_Mutation p.G87S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-FW-A3R5-06 14 107218706 107218706 G A IGHV3-74 Silent p.A107A 0.30 TCGA-FW-A3R5-06 14 107283249 107283249 G A IGHV7-81 5'UTR 0.33 TCGA-FW-A3R5-06 14 19378024 19378024 C T OR11H12 Missense_Mutation p.P144L 0.23 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 14 19378100 19378100 G T OR11H12 Silent p.L169L 0.14 TCGA-FW-A3R5-06 14 19553749 19553749 G A POTEG Silent p.G111G 0.26 TCGA-FW-A3R5-06 14 19553778 19553778 G A POTEG Missense_Mutation p.G121E 0.13 tolerated(0.42) benign(0.008) TCGA-FW-A3R5-06 14 19553850 19553850 G A POTEG Missense_Mutation p.R145K 0.13 tolerated(0.57) possibly_damaging(0.728) TCGA-FW-A3R5-06 14 19559102 19559102 G A POTEG Missense_Mutation p.E250K 0.38 tolerated(0.1) probably_damaging(0.952) TCGA-FW-A3R5-06 14 19566052 19566052 C T POTEG Silent p.L366L 0.07 TCGA-FW-A3R5-06 14 19988146 19988146 G A POTEM 3'UTR 0.19 TCGA-FW-A3R5-06 14 19988197 19988197 C T POTEM 3'UTR 0.26 TCGA-FW-A3R5-06 14 19988297 19988297 G A POTEM 3'UTR 0.17 TCGA-FW-A3R5-06 14 20215667 20215667 C T OR4Q3 Silent p.L27L 0.31 TCGA-FW-A3R5-06 14 20248731 20248731 G A OR4M1 Missense_Mutation p.D84N 0.28 deleterious(0.02) possibly_damaging(0.456) TCGA-FW-A3R5-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.25 deleterious(0.01) benign(0.048) TCGA-FW-A3R5-06 14 20249310 20249310 C T OR4M1 Missense_Mutation p.H277Y 0.28 tolerated(1) possibly_damaging(0.883) TCGA-FW-A3R5-06 14 20296056 20296056 T C OR4N2 Missense_Mutation p.L150P 0.30 deleterious(0.03) benign(0.033) TCGA-FW-A3R5-06 14 20344598 20344598 C T OR4K2 Missense_Mutation p.P58S 0.31 deleterious(0) benign(0.057) TCGA-FW-A3R5-06 14 20344970 20344970 C T OR4K2 Missense_Mutation p.P182S 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 20345121 20345121 G A OR4K2 Missense_Mutation p.G232E 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 14 20345124 20345124 C T OR4K2 Missense_Mutation p.S233L 0.27 tolerated(0.53) possibly_damaging(0.794) TCGA-FW-A3R5-06 14 20345295 20345295 G A OR4K2 Missense_Mutation p.R290K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 14 20389047 20389047 C T OR4K5 Silent p.F94F 0.33 TCGA-FW-A3R5-06 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.29 TCGA-FW-A3R5-06 14 20404029 20404029 C T OR4K1 Silent p.F68F 0.29 TCGA-FW-A3R5-06 14 20404038 20404038 C T OR4K1 Silent p.I71I 0.29 TCGA-FW-A3R5-06 14 20404233 20404233 G A OR4K1 Missense_Mutation p.M136I 0.29 tolerated(0.06) benign(0.005) TCGA-FW-A3R5-06 14 20443765 20443765 C T OR4K15 Missense_Mutation p.H30Y 0.33 tolerated(0.72) benign(0.001) TCGA-FW-A3R5-06 14 20444290 20444290 C T OR4K15 Missense_Mutation p.L205F 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-FW-A3R5-06 14 20482730 20482730 G A OR4K14 Missense_Mutation p.S208F 0.34 deleterious(0) probably_damaging(0.924) TCGA-FW-A3R5-06 14 20502631 20502631 C T OR4K13 Missense_Mutation p.G96E 0.33 deleterious(0.01) possibly_damaging(0.589) TCGA-FW-A3R5-06 14 20528284 20528284 C T OR4L1 Silent p.F27F 0.30 TCGA-FW-A3R5-06 14 20528889 20528889 C T OR4L1 Missense_Mutation p.S229L 0.26 deleterious(0.01) probably_damaging(0.911) TCGA-FW-A3R5-06 14 20585753 20585753 C T OR4K17 Missense_Mutation p.S63L 0.25 tolerated(0.1) benign(0.046) TCGA-FW-A3R5-06 14 20586117 20586117 C T OR4K17 Silent p.L184L 0.32 TCGA-FW-A3R5-06 14 20586118 20586118 C T OR4K17 Missense_Mutation p.L185F 0.34 tolerated(0.07) benign(0.042) TCGA-FW-A3R5-06 14 20586169 20586169 C T OR4K17 Missense_Mutation p.P202S 0.30 deleterious(0.03) benign(0.444) TCGA-FW-A3R5-06 14 20612740 20612740 G A OR4N5 Missense_Mutation p.M282I 0.30 deleterious(0) benign(0.04) TCGA-FW-A3R5-06 14 20665616 20665616 C T OR11G2 Missense_Mutation p.P41L 0.14 tolerated(0.14) benign(0.001) TCGA-FW-A3R5-06 14 20665659 20665659 C T OR11G2 Silent p.F55F 0.24 TCGA-FW-A3R5-06 14 20666274 20666274 G A OR11G2 Silent p.V260V 0.17 TCGA-FW-A3R5-06 14 20691984 20691984 G A OR11H6 Missense_Mutation p.R39K 0.24 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 14 20711110 20711110 G A OR11H4 Missense_Mutation p.A54T 0.26 tolerated(0.12) benign(0.021) TCGA-FW-A3R5-06 14 20711301 20711301 G A OR11H4 Silent p.L117L 0.17 TCGA-FW-A3R5-06 14 20711559 20711559 C T OR11H4 Silent p.P203P 0.29 TCGA-FW-A3R5-06 14 20711684 20711684 G A OR11H4 Missense_Mutation p.R245K 0.10 tolerated(0.33) benign(0.008) TCGA-FW-A3R5-06 14 20711904 20711904 G A OR11H4 Missense_Mutation p.M318I 0.35 tolerated(0.41) benign(0.001) TCGA-FW-A3R5-06 14 20767011 20767011 G A TTC5 Missense_Mutation p.S195F 0.35 tolerated(0.5) benign(0.003) TCGA-FW-A3R5-06 14 20781668 20781668 G A CCNB1IP1 Missense_Mutation p.P197L 0.19 tolerated_low_confidence(0.22) benign(0.002) TCGA-FW-A3R5-06 14 20846357 20846357 G A TEP1 Silent p.A1849A 0.28 TCGA-FW-A3R5-06 14 20848472 20848472 G A TEP1 Missense_Mutation p.S1642L 0.31 tolerated(0.05) benign(0.019) TCGA-FW-A3R5-06 14 20849204 20849204 G A TEP1 Missense_Mutation p.L1550F 0.22 deleterious(0.03) benign(0.033) TCGA-FW-A3R5-06 14 20850797 20850797 G A TEP1 Silent p.F1375F 0.28 TCGA-FW-A3R5-06 14 20851952 20851952 G A TEP1 Silent p.T1220T 0.30 TCGA-FW-A3R5-06 14 20856143 20856143 G A TEP1 Missense_Mutation p.P869S 0.25 tolerated(0.2) benign(0.282) TCGA-FW-A3R5-06 14 20943236 20943236 C T PNP Silent p.F159F 0.32 TCGA-FW-A3R5-06 14 20943237 20943237 C T PNP Missense_Mutation p.P160S 0.32 deleterious(0.02) possibly_damaging(0.553) TCGA-FW-A3R5-06 14 20978633 20978633 G A RNASE10 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FW-A3R5-06 14 20979118 20979118 G A RNASE10 Missense_Mutation p.G163E 0.28 tolerated(0.13) possibly_damaging(0.503) TCGA-FW-A3R5-06 14 21052444 21052444 G A RNASE11 Missense_Mutation p.L64F 0.25 tolerated(0.06) benign(0.012) TCGA-FW-A3R5-06 14 21058675 21058675 G A RNASE12 Missense_Mutation p.H70Y 0.08 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 14 21058901 21058901 C T RNASE12 5'UTR 0.31 TCGA-FW-A3R5-06 14 21216087 21216087 G A EDDM3A Silent p.E116E 0.23 TCGA-FW-A3R5-06 14 21238538 21238538 G A EDDM3B Missense_Mutation p.E77K 0.25 deleterious(0.04) benign(0.07) TCGA-FW-A3R5-06 14 21238679 21238679 G A EDDM3B Missense_Mutation p.E124K 0.11 tolerated(0.09) probably_damaging(0.989) TCGA-FW-A3R5-06 14 21269835 21269835 C T RNASE1 Silent p.E131E 0.34 TCGA-FW-A3R5-06 14 21359902 21359902 G A RNASE3 Missense_Mutation p.M19I 0.29 tolerated(0.11) benign(0.01) TCGA-FW-A3R5-06 14 21359980 21359980 G A RNASE3 Silent p.L45L 0.29 TCGA-FW-A3R5-06 14 21464991 21464991 C T METTL17 Silent p.T462T 0.27 TCGA-FW-A3R5-06 14 21499223 21499223 G A TPPP2 Missense_Mutation p.E76K 0.31 tolerated(0.06) possibly_damaging(0.711) TCGA-FW-A3R5-06 14 21542995 21542995 C T ARHGEF40 Missense_Mutation p.P369L 0.17 deleterious(0.02) benign(0.037) TCGA-FW-A3R5-06 14 21624046 21624046 C T OR5AU1 Missense_Mutation p.E47K 0.29 tolerated(0.68) benign(0.015) TCGA-FW-A3R5-06 14 21771626 21771626 G A RPGRIP1 Missense_Mutation p.E242K 0.42 deleterious(0.03) probably_damaging(0.985) TCGA-FW-A3R5-06 14 21793123 21793123 A C RPGRIP1 Silent p.I703I 0.27 TCGA-FW-A3R5-06 14 21793124 21793124 C A RPGRIP1 Missense_Mutation p.H704N 0.28 deleterious(0) possibly_damaging(0.872) TCGA-FW-A3R5-06 14 21795948 21795948 G A RPGRIP1 Silent p.K959K 0.13 TCGA-FW-A3R5-06 14 21840062 21840062 G A SUPT16H Missense_Mutation p.P101S 0.21 tolerated(0.07) probably_damaging(0.98) TCGA-FW-A3R5-06 14 21840063 21840063 G A SUPT16H Silent p.A100A 0.22 TCGA-FW-A3R5-06 14 21852211 21852211 C T SUPT16H 5'UTR 0.50 TCGA-FW-A3R5-06 14 21860965 21860965 G A CHD8 Missense_Mutation p.R2158C 0.08 deleterious(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 14 21866051 21866051 C G CHD8 Missense_Mutation p.G1661A 0.19 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 21876619 21876619 G A CHD8 Missense_Mutation p.P861L 0.12 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 21876620 21876620 G A CHD8 Missense_Mutation p.P861S 0.12 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 21896403 21896403 G A CHD8 Missense_Mutation p.S409F 0.10 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-FW-A3R5-06 14 21899156 21899156 G A CHD8 Missense_Mutation p.S216F 0.17 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-FW-A3R5-06 14 21930572 21930572 G A RAB2B Silent p.F160F 0.28 TCGA-FW-A3R5-06 14 21945658 21945658 C T TOX4 Missense_Mutation p.P4S 0.22 tolerated(0.26) possibly_damaging(0.877) TCGA-FW-A3R5-06 14 21967278 21967278 G A METTL3 Missense_Mutation p.R508C 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 21990920 21990920 G A SALL2 Missense_Mutation p.S981F 0.27 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-FW-A3R5-06 14 21991358 21991358 G A SALL2 Missense_Mutation p.S835F 0.15 tolerated(0.05) benign(0.001) TCGA-FW-A3R5-06 14 21992264 21992264 C T SALL2 Missense_Mutation p.G533D 0.11 deleterious(0.01) possibly_damaging(0.739) TCGA-FW-A3R5-06 14 21992265 21992265 C T SALL2 Missense_Mutation p.G533S 0.09 tolerated(0.08) benign(0.37) TCGA-FW-A3R5-06 14 21992957 21992957 G A SALL2 Missense_Mutation p.P302L 0.34 tolerated(0.07) benign(0.424) TCGA-FW-A3R5-06 14 22005007 22005007 C T SALL2 Missense_Mutation p.E17K 0.37 deleterious(0.04) benign(0.015) TCGA-FW-A3R5-06 14 22038877 22038877 T A OR10G3 5'Flank 0.40 TCGA-FW-A3R5-06 14 22090554 22090555 - A TRAV1-1 Frame_Shift_Ins p.H55Tfs*2 0.24 TCGA-FW-A3R5-06 14 22102441 22102441 G A OR10G2 Silent p.I186I 0.11 TCGA-FW-A3R5-06 14 22102645 22102645 G A OR10G2 Silent p.F118F 0.32 TCGA-FW-A3R5-06 14 22102707 22102707 G A OR10G2 Missense_Mutation p.P98S 0.33 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 14 22102815 22102815 G A OR10G2 Missense_Mutation p.R62C 0.30 deleterious(0) possibly_damaging(0.847) TCGA-FW-A3R5-06 14 22102995 22102995 C T OR10G2 Missense_Mutation p.G2R 0.21 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 14 22111137 22111137 C T TRAV1-2 5'UTR 0.19 TCGA-FW-A3R5-06 14 22133704 22133704 G A OR4E2 Missense_Mutation p.M136I 0.34 tolerated(0.05) benign(0.012) TCGA-FW-A3R5-06 14 22133973 22133973 G A OR4E2 Missense_Mutation p.R226Q 0.33 deleterious(0.04) benign(0.202) TCGA-FW-A3R5-06 14 22134064 22134064 C T OR4E2 Silent p.F256F 0.33 TCGA-FW-A3R5-06 14 22134094 22134094 C T OR4E2 Silent p.S266S 0.21 TCGA-FW-A3R5-06 14 22134151 22134151 C T OR4E2 Silent p.F285F 0.19 TCGA-FW-A3R5-06 14 22180969 22180969 G A TRAV2 Missense_Mutation p.G81R 0.27 deleterious(0) possibly_damaging(0.789) TCGA-FW-A3R5-06 14 22192542 22192542 C T TRAV3 Missense_Mutation p.A106V 0.40 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 14 22204515 22204515 G A TRAV4 Silent p.A5A 0.29 TCGA-FW-A3R5-06 14 22205179 22205179 C T TRAV4 Silent p.I81I 0.46 TCGA-FW-A3R5-06 14 22217766 22217766 C T TRAV5 Silent p.S39S 0.23 TCGA-FW-A3R5-06 14 22237033 22237033 G A TRAV6 Nonsense_Mutation p.W37* 0.27 TCGA-FW-A3R5-06 14 22237162 22237162 G A TRAV6 Missense_Mutation p.G80E 0.29 deleterious(0) probably_damaging(0.909) TCGA-FW-A3R5-06 14 22265829 22265829 C T TRAV8-1 Silent p.L38L 0.11 TCGA-FW-A3R5-06 14 22265871 22265871 C T TRAV8-1 Missense_Mutation p.L52F 0.08 deleterious(0.02) possibly_damaging(0.742) TCGA-FW-A3R5-06 14 22294096 22294096 C T TRAV10 Missense_Mutation p.S67F 0.35 tolerated(0.7) benign(0.002) TCGA-FW-A3R5-06 14 22309848 22309848 G A TRAV12-1 Missense_Mutation p.E77K 0.23 tolerated(0.29) benign(0.219) TCGA-FW-A3R5-06 14 22315315 22315315 G A TRAV8-2 Missense_Mutation p.E85K 0.29 tolerated(0.09) benign(0.039) TCGA-FW-A3R5-06 14 22321054 22321054 C T TRAV8-3 Missense_Mutation p.S71L 0.25 deleterious(0.03) benign(0.149) TCGA-FW-A3R5-06 14 22337041 22337041 G A TRAV13-1 5'UTR 0.33 TCGA-FW-A3R5-06 14 22337337 22337337 C T TRAV13-1 Missense_Mutation p.T43I 0.33 deleterious(0.01) probably_damaging(0.94) TCGA-FW-A3R5-06 14 22337365 22337365 C T TRAV13-1 Silent p.F52F 0.27 TCGA-FW-A3R5-06 14 22356412 22356412 G A TRAV12-2 Missense_Mutation p.E24K 0.23 tolerated(0.32) benign(0.009) TCGA-FW-A3R5-06 14 22363169 22363169 C T TRAV8-4 Silent p.A100A 0.22 TCGA-FW-A3R5-06 14 22409569 22409569 G A TRAV9-2 Missense_Mutation p.G20E 0.31 deleterious(0.01) possibly_damaging(0.868) TCGA-FW-A3R5-06 14 22447294 22447294 C T TRAV8-6 Missense_Mutation p.S92F 0.24 deleterious(0) possibly_damaging(0.876) TCGA-FW-A3R5-06 14 22580921 22580921 G A TRAV25 Silent p.K88K 0.39 TCGA-FW-A3R5-06 14 22616535 22616535 C T TRAV27 Silent p.L92L 0.29 TCGA-FW-A3R5-06 14 22636798 22636798 C T TRAV30 Missense_Mutation p.S84L 0.30 benign(0.023) TCGA-FW-A3R5-06 14 22671253 22671253 C T TRAV26-2 Silent p.I106I 0.10 TCGA-FW-A3R5-06 14 22740410 22740410 G A TRAV38-1 Missense_Mutation p.G105E 0.25 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 14 22749075 22749075 C T TRAV38-2DV8 Silent p.T14T 0.32 TCGA-FW-A3R5-06 14 22749540 22749540 G A TRAV38-2DV8 Silent p.V86V 0.35 TCGA-FW-A3R5-06 14 22783078 22783078 G A TRAV40 Missense_Mutation p.G15E 0.46 tolerated(0.08) possibly_damaging(0.747) TCGA-FW-A3R5-06 14 22788875 22788875 C T TRAV41 Missense_Mutation p.P30S 0.44 deleterious(0) benign(0.363) TCGA-FW-A3R5-06 14 22974135 22974135 G A TRAJ36 Silent p.T14T 0.28 TCGA-FW-A3R5-06 14 23004532 23004532 G A TRAJ9 Missense_Mutation p.G11R 0.17 unknown(0) TCGA-FW-A3R5-06 14 23235850 23235850 C T OXA1L Silent p.F40F 0.30 TCGA-FW-A3R5-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.30 tolerated_low_confidence(0.11) benign(0.004) TCGA-FW-A3R5-06 14 23344336 23344336 C T LRP10 Silent p.S96S 0.19 TCGA-FW-A3R5-06 14 23353973 23353973 G A REM2 Missense_Mutation p.R65Q 0.37 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 14 23380554 23380554 G A RBM23 Missense_Mutation p.P17S 0.19 deleterious(0.04) possibly_damaging(0.857) TCGA-FW-A3R5-06 14 23396742 23396742 G A PRMT5 Missense_Mutation p.S148F 0.29 tolerated(0.64) benign(0.004) TCGA-FW-A3R5-06 14 23416931 23416931 G A HAUS4 Missense_Mutation p.R240C 0.25 tolerated(0.05) benign(0.287) TCGA-FW-A3R5-06 14 23443310 23443310 G A AJUBA Silent p.I479I 0.29 TCGA-FW-A3R5-06 14 23451518 23451518 C T AJUBA 5'UTR 0.36 TCGA-FW-A3R5-06 14 23511881 23511881 C T PSMB11 Silent p.A149A 0.34 TCGA-FW-A3R5-06 14 23517527 23517527 C T CDH24 Missense_Mutation p.G708R 0.33 tolerated(0.1) possibly_damaging(0.769) TCGA-FW-A3R5-06 14 23517687 23517687 G A CDH24 Silent p.A654A 0.24 TCGA-FW-A3R5-06 14 23549177 23549177 G A ACIN1 Missense_Mutation p.A514V 0.39 benign(0.003) TCGA-FW-A3R5-06 14 23566952 23566952 C T C14orf119 Missense_Mutation p.P29S 0.27 tolerated(0.2) benign(0.089) TCGA-FW-A3R5-06 14 23566953 23566953 C T C14orf119 Missense_Mutation p.P29L 0.27 tolerated(0.38) benign(0.03) TCGA-FW-A3R5-06 14 23588189 23588189 C T CEBPE Missense_Mutation p.A38T 0.17 tolerated(1) benign(0) TCGA-FW-A3R5-06 14 23600749 23600749 G A SLC7A8 Missense_Mutation p.A345V 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 23635600 23635600 G A SLC7A8 Missense_Mutation p.P101S 0.32 tolerated(0.22) probably_damaging(1) TCGA-FW-A3R5-06 14 23793584 23793584 C T PABPN1 Intron 0.29 TCGA-FW-A3R5-06 14 23816749 23816749 G A SLC22A17 Missense_Mutation p.S379F 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 23817773 23817773 C T SLC22A17 Missense_Mutation p.D212N 0.27 tolerated(0.06) probably_damaging(0.977) TCGA-FW-A3R5-06 14 23817804 23817804 G A SLC22A17 Silent p.F201F 0.18 TCGA-FW-A3R5-06 14 23828896 23828896 G A EFS Missense_Mutation p.P264L 0.33 deleterious(0.02) benign(0.077) TCGA-FW-A3R5-06 14 23845239 23845239 G A IL25 3'UTR 0.33 TCGA-FW-A3R5-06 14 23846556 23846556 C T CMTM5 Silent p.S32S 0.20 TCGA-FW-A3R5-06 14 23846557 23846557 C T CMTM5 Missense_Mutation p.H33Y 0.20 tolerated(1) benign(0.023) TCGA-FW-A3R5-06 14 23848713 23848713 C T CMTM5 3'UTR 0.17 TCGA-FW-A3R5-06 14 23851691 23851691 G A MYH6 Silent p.I1914I 0.30 TCGA-FW-A3R5-06 14 23855800 23855800 G A MYH6 Silent p.L1561L 0.29 TCGA-FW-A3R5-06 14 23857825 23857825 C T MYH6 Intron 0.20 TCGA-FW-A3R5-06 14 23859508 23859508 C T MYH6 Missense_Mutation p.E1164K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 14 23862712 23862712 C T MYH6 Missense_Mutation p.E982K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 14 23865591 23865591 C T MYH6 Silent p.E777E 0.08 TCGA-FW-A3R5-06 14 23865624 23865624 G A MYH6 Silent p.F766F 0.27 TCGA-FW-A3R5-06 14 23866398 23866398 G A MYH6 Silent p.P677P 0.30 TCGA-FW-A3R5-06 14 23872985 23872985 C T MYH6 Silent p.G246G 0.21 TCGA-FW-A3R5-06 14 23874889 23874889 C T MYH6 Missense_Mutation p.E98K 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-FW-A3R5-06 14 23884842 23884842 G A MYH7 Missense_Mutation p.S1718F 0.29 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 14 23885428 23885428 C T MYH7 Missense_Mutation p.D1580N 0.27 deleterious(0.04) possibly_damaging(0.796) TCGA-FW-A3R5-06 14 23886094 23886094 C T MYH7 Missense_Mutation p.A1543T 0.28 tolerated(0.09) probably_damaging(0.971) TCGA-FW-A3R5-06 14 23886741 23886741 G A MYH7 Silent p.L1442L 0.25 TCGA-FW-A3R5-06 14 23886742 23886742 G A MYH7 Silent p.A1441A 0.25 TCGA-FW-A3R5-06 14 23886856 23886856 G A MYH7 Silent p.A1403A 0.38 TCGA-FW-A3R5-06 14 23886857 23886857 G A MYH7 Missense_Mutation p.A1403V 0.40 tolerated(0.1) benign(0.143) TCGA-FW-A3R5-06 14 23889251 23889251 C T MYH7 Missense_Mutation p.D1177N 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 14 23892849 23892849 G A MYH7 Silent p.A1002A 0.27 TCGA-FW-A3R5-06 14 23893247 23893247 C T MYH7 Missense_Mutation p.E931K 0.22 deleterious(0.01) possibly_damaging(0.871) TCGA-FW-A3R5-06 14 23895187 23895187 C T MYH7 Silent p.G716G 0.20 TCGA-FW-A3R5-06 14 23896011 23896011 G A MYH7 Silent p.I673I 0.25 TCGA-FW-A3R5-06 14 23896924 23896924 C T MYH7 Silent p.V586V 0.27 TCGA-FW-A3R5-06 14 23897778 23897778 C T MYH7 Silent p.K503K 0.22 TCGA-FW-A3R5-06 14 23898557 23898557 C T MYH7 Splice_Site p.X380_splice 0.34 TCGA-FW-A3R5-06 14 23899062 23899062 C T MYH7 Missense_Mutation p.G354S 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 14 23901876 23901876 G A MYH7 Silent p.S158S 0.34 TCGA-FW-A3R5-06 14 23944473 23944473 C T NGDN Missense_Mutation p.L80F 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-FW-A3R5-06 14 23947309 23947309 C T NGDN 3'UTR 0.22 TCGA-FW-A3R5-06 14 24108096 24108096 G C DHRS2 Missense_Mutation p.G8A 0.30 tolerated_low_confidence(0.86) benign(0.005) TCGA-FW-A3R5-06 14 24108541 24108541 G A DHRS2 Silent p.E98E 0.23 TCGA-FW-A3R5-06 14 24527904 24527904 G A LRRC16B Missense_Mutation p.A470T 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 24528491 24528491 C T LRRC16B Silent p.L547L 0.30 TCGA-FW-A3R5-06 14 24528509 24528509 C T LRRC16B Missense_Mutation p.R553W 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 24529224 24529224 C T LRRC16B Silent p.S638S 0.20 TCGA-FW-A3R5-06 14 24538596 24538596 G A LRRC16B Missense_Mutation p.E1368K 0.39 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 14 24543416 24543416 G A CPNE6 Intron 0.26 TCGA-FW-A3R5-06 14 24544463 24544463 G A CPNE6 Missense_Mutation p.G252E 0.26 deleterious(0) benign(0.147) TCGA-FW-A3R5-06 14 24546362 24546362 G A CPNE6 Splice_Site p.X434_splice 0.17 TCGA-FW-A3R5-06 14 24551935 24551935 G A NRL Silent p.S41S 0.20 TCGA-FW-A3R5-06 14 24552051 24552051 G A NRL Silent p.L3L 0.19 TCGA-FW-A3R5-06 14 24552052 24552052 G A NRL Silent p.A2A 0.18 TCGA-FW-A3R5-06 14 24590594 24590594 C T DCAF11 Missense_Mutation p.P423S 0.29 tolerated(0.4) benign(0.017) TCGA-FW-A3R5-06 14 24592585 24592585 C T DCAF11 3'UTR 0.30 TCGA-FW-A3R5-06 14 24600934 24600934 C T RP11-468E2.6 Silent p.R242R 0.28 TCGA-FW-A3R5-06 14 24601911 24601911 C T FITM1 Missense_Mutation p.A253V 0.30 tolerated(0.19) probably_damaging(0.932) TCGA-FW-A3R5-06 14 24613611 24613611 G A PSME2 Nonsense_Mutation p.Q143* 0.08 TCGA-FW-A3R5-06 14 24653942 24653942 G A IPO4 Missense_Mutation p.P517L 0.37 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 14 24654769 24654769 G A IPO4 Silent p.L392L 0.32 TCGA-FW-A3R5-06 14 24675162 24675162 A G TSSK4 Silent p.P11P 0.19 TCGA-FW-A3R5-06 14 24702446 24702446 C T GMPR2 Missense_Mutation p.P14L 0.29 deleterious_low_confidence(0.01) benign(0) TCGA-FW-A3R5-06 14 24730968 24730968 G A TGM1 Silent p.F147F 0.09 TCGA-FW-A3R5-06 14 24789026 24789026 G A ADCY4 Silent p.F885F 0.28 TCGA-FW-A3R5-06 14 24805461 24805461 G A RIPK3 Missense_Mutation p.P493S 0.08 tolerated_low_confidence(0.15) benign(0.037) TCGA-FW-A3R5-06 14 24808358 24808358 G A RIPK3 Missense_Mutation p.R112W 0.34 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 14 24839717 24839717 G A NFATC4 Silent p.E434E 0.15 TCGA-FW-A3R5-06 14 24842338 24842338 G A NFATC4 Intron 0.16 TCGA-FW-A3R5-06 14 24843508 24843508 C T NFATC4 Intron 0.33 TCGA-FW-A3R5-06 14 24845205 24845205 G A NFATC4 Missense_Mutation p.E715K 0.09 deleterious(0.01) benign(0.442) TCGA-FW-A3R5-06 14 24877584 24877584 C T NYNRIN Silent p.S236S 0.18 TCGA-FW-A3R5-06 14 24878113 24878113 C T NYNRIN Silent p.I371I 0.46 TCGA-FW-A3R5-06 14 24878721 24878721 G A NYNRIN Missense_Mutation p.R574Q 0.25 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 14 24878874 24878874 C T NYNRIN Missense_Mutation p.P625L 0.25 tolerated_low_confidence(0.06) benign(0.001) TCGA-FW-A3R5-06 14 24878979 24878979 C T NYNRIN Missense_Mutation p.S660F 0.14 deleterious_low_confidence(0) benign(0.34) TCGA-FW-A3R5-06 14 24880576 24880576 G A NYNRIN Silent p.T854T 0.33 TCGA-FW-A3R5-06 14 24884436 24884436 C T NYNRIN Missense_Mutation p.R1161C 0.29 tolerated(0.14) benign(0.416) TCGA-FW-A3R5-06 14 24885322 24885322 G A NYNRIN Nonsense_Mutation p.W1456* 0.38 TCGA-FW-A3R5-06 14 24885581 24885581 G A NYNRIN Silent p.R1542R 0.48 TCGA-FW-A3R5-06 14 24885902 24885902 C T NYNRIN Silent p.F1649F 0.19 TCGA-FW-A3R5-06 14 24886121 24886121 C T NYNRIN Silent p.F1722F 0.27 TCGA-FW-A3R5-06 14 24898065 24898065 C T CBLN3 Missense_Mutation p.E66K 0.18 deleterious(0.02) benign(0.131) TCGA-FW-A3R5-06 14 25042867 25042867 C T CTSG Silent p.L248L 0.18 TCGA-FW-A3R5-06 14 25043497 25043497 C T CTSG Missense_Mutation p.R183K 0.31 deleterious(0.02) benign(0.003) TCGA-FW-A3R5-06 14 25043589 25043589 C T CTSG Missense_Mutation p.M152I 0.29 tolerated(0.44) benign(0.011) TCGA-FW-A3R5-06 14 25076911 25076911 C T GZMH Silent p.Q82Q 0.26 TCGA-FW-A3R5-06 14 25101071 25101071 G A GZMB Missense_Mutation p.S198F 0.26 tolerated(0.06) possibly_damaging(0.511) TCGA-FW-A3R5-06 14 26917478 26917478 G A NOVA1 Missense_Mutation p.P404L 0.27 tolerated(0.07) benign(0.378) TCGA-FW-A3R5-06 14 27066599 27066599 C T NOVA1 Missense_Mutation p.G15E 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A3R5-06 14 28733809 28733809 C T BNIP3P1 RNA 0.12 TCGA-FW-A3R5-06 14 29237400 29237400 C T FOXG1 Silent p.S305S 0.23 TCGA-FW-A3R5-06 14 30066932 30066932 G A PRKD1 Silent p.I733I 0.31 TCGA-FW-A3R5-06 14 31354932 31354932 G A COCH Intron 0.28 TCGA-FW-A3R5-06 14 32562460 32562460 C T ARHGAP5 Missense_Mutation p.S862L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 33015577 33015577 C T AKAP6 Missense_Mutation p.S573F 0.28 tolerated(0.33) possibly_damaging(0.828) TCGA-FW-A3R5-06 14 33165256 33165256 C T AKAP6 Silent p.S980S 0.31 TCGA-FW-A3R5-06 14 33291034 33291034 C T AKAP6 Missense_Mutation p.L1339F 0.24 deleterious(0) possibly_damaging(0.642) TCGA-FW-A3R5-06 14 33291424 33291424 G A AKAP6 Missense_Mutation p.D1469N 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 33291465 33291465 G A AKAP6 Missense_Mutation p.M1482I 0.28 deleterious_low_confidence(0.03) benign(0.03) TCGA-FW-A3R5-06 14 33291974 33291974 G A AKAP6 Missense_Mutation p.R1652Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 33292591 33292591 G A AKAP6 Missense_Mutation p.E1858K 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-FW-A3R5-06 14 33293903 33293903 C T AKAP6 Missense_Mutation p.P2295L 0.26 deleterious_low_confidence(0.04) benign(0.016) TCGA-FW-A3R5-06 14 33684385 33684385 C T NPAS3 Intron 0.30 TCGA-FW-A3R5-06 14 34029359 34029359 G A NPAS3 Silent p.Q167Q 0.28 TCGA-FW-A3R5-06 14 34247714 34247714 G A NPAS3 Silent p.G363G 0.31 TCGA-FW-A3R5-06 14 34269257 34269257 G A NPAS3 Missense_Mutation p.D582N 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-FW-A3R5-06 14 35005444 35005444 G A EAPP Missense_Mutation p.P38S 0.32 tolerated(0.06) possibly_damaging(0.764) TCGA-FW-A3R5-06 14 35224069 35224069 G A BAZ1A Missense_Mutation p.R1480C 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 35245491 35245491 G A BAZ1A Missense_Mutation p.L823F 0.33 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 14 35255033 35255033 G A BAZ1A Missense_Mutation p.P594L 0.08 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 14 35255046 35255046 G A BAZ1A Missense_Mutation p.R590C 0.34 deleterious(0) probably_damaging(0.919) TCGA-FW-A3R5-06 14 35649969 35649969 C T KIAA0391 Missense_Mutation p.R421C 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 14 36840769 36840769 G A DPPA3P2 RNA 0.34 TCGA-FW-A3R5-06 14 36987098 36987098 G A NKX2-1 Silent p.L197L 0.32 TCGA-FW-A3R5-06 14 36989255 36989255 C T NKX2-1 Intron 0.15 TCGA-FW-A3R5-06 14 37145742 37145742 C T PAX9 3'UTR 0.33 TCGA-FW-A3R5-06 14 37149760 37149760 C T SLC25A21 3'UTR 0.22 TCGA-FW-A3R5-06 14 37180580 37180580 G A SLC25A21 Silent p.F182F 0.32 TCGA-FW-A3R5-06 14 37969339 37969339 C T MIPOL1 Nonsense_Mutation p.Q420* 0.17 TCGA-FW-A3R5-06 14 38281580 38281580 C T TTC6 Missense_Mutation p.T1544I 0.26 tolerated(0.12) probably_damaging(0.991) TCGA-FW-A3R5-06 14 38296443 38296443 C T TTC6 Missense_Mutation p.H1724Y 0.32 tolerated(0.15) probably_damaging(0.999) TCGA-FW-A3R5-06 14 38311470 38311470 C T TTC6 Missense_Mutation p.L1879F 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 14 38678583 38678583 C T SSTR1 5'UTR 0.33 TCGA-FW-A3R5-06 14 38678933 38678933 C T SSTR1 Silent p.F113F 0.19 TCGA-FW-A3R5-06 14 38679711 38679711 C T SSTR1 Silent p.L373L 0.14 TCGA-FW-A3R5-06 14 38679819 38679819 G A SSTR1 3'UTR 0.20 TCGA-FW-A3R5-06 14 38723952 38723952 G A CLEC14A Missense_Mutation p.H426Y 0.41 deleterious(0) possibly_damaging(0.635) TCGA-FW-A3R5-06 14 38724262 38724262 C T CLEC14A Silent p.R322R 0.27 TCGA-FW-A3R5-06 14 39304870 39304870 G A LINC00639 RNA 0.34 TCGA-FW-A3R5-06 14 39304962 39304962 C T LINC00639 RNA 0.18 TCGA-FW-A3R5-06 14 39510025 39510025 G A SEC23A Silent p.L685L 0.19 TCGA-FW-A3R5-06 14 39703296 39703296 G A MIA2 5'UTR 0.22 TCGA-FW-A3R5-06 14 39717177 39717177 C T MIA2 Missense_Mutation p.P467S 0.31 tolerated(0.15) benign(0.377) TCGA-FW-A3R5-06 14 39721990 39721990 G A MIA2 Missense_Mutation p.E536K 0.24 tolerated(0.08) benign(0.039) TCGA-FW-A3R5-06 14 39796071 39796071 C T CTAGE5 Missense_Mutation p.S564L 0.19 tolerated(0.22) benign(0.037) TCGA-FW-A3R5-06 14 39817998 39817998 C T CTAGE5 Missense_Mutation p.P694S 0.11 tolerated(0.4) benign(0.02) TCGA-FW-A3R5-06 14 42356729 42356729 G A LRFN5 Missense_Mutation p.G301R 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 42356895 42356895 C T LRFN5 Missense_Mutation p.T356I 0.31 tolerated(0.05) probably_damaging(0.949) TCGA-FW-A3R5-06 14 42368140 42368140 G A LRFN5 Missense_Mutation p.D707N 0.13 tolerated_low_confidence(0.34) benign(0.006) TCGA-FW-A3R5-06 14 44974300 44974300 G A FSCB Missense_Mutation p.P631S 0.15 tolerated(0.11) unknown(0) TCGA-FW-A3R5-06 14 44974301 44974301 G A FSCB Silent p.A630A 0.15 TCGA-FW-A3R5-06 14 44974582 44974582 C T FSCB Missense_Mutation p.E537K 0.38 tolerated(0.14) benign(0.053) TCGA-FW-A3R5-06 14 44975176 44975176 C T FSCB Missense_Mutation p.E339K 0.22 deleterious(0.01) possibly_damaging(0.486) TCGA-FW-A3R5-06 14 44975656 44975656 C T FSCB Missense_Mutation p.E179K 0.28 tolerated(0.13) possibly_damaging(0.699) TCGA-FW-A3R5-06 14 45475275 45475275 C T FAM179B Silent p.S903S 0.20 TCGA-FW-A3R5-06 14 45475276 45475276 C A FAM179B Silent p.R904R 0.20 TCGA-FW-A3R5-06 14 45478136 45478136 C T FAM179B Silent p.S975S 0.27 TCGA-FW-A3R5-06 14 45603624 45603624 C T FKBP3 Silent p.V12V 0.21 TCGA-FW-A3R5-06 14 47120366 47120366 G A RPL10L Missense_Mutation p.P192S 0.33 tolerated(0.15) benign(0.045) TCGA-FW-A3R5-06 14 47121024 47121024 C T RPL10L 5'UTR 0.17 TCGA-FW-A3R5-06 14 47601016 47601016 G A MDGA2 Nonsense_Mutation p.R276* 0.30 TCGA-FW-A3R5-06 14 50210498 50210498 C T KLHDC1 Nonsense_Mutation p.Q337* 0.21 TCGA-FW-A3R5-06 14 50600952 50600952 G A SOS2 Silent p.F988F 0.28 TCGA-FW-A3R5-06 14 50789441 50789441 A T ATP5S Intron 0.08 TCGA-FW-A3R5-06 14 50844978 50844978 C T CDKL1 Intron 0.50 TCGA-FW-A3R5-06 14 50912805 50912805 G A MAP4K5 Missense_Mutation p.P393S 0.12 tolerated(0.1) benign(0.373) TCGA-FW-A3R5-06 14 51054558 51054558 C T ATL1 Missense_Mutation p.S15L 0.28 tolerated_low_confidence(0.23) benign(0.01) TCGA-FW-A3R5-06 14 51054653 51054653 G A ATL1 Missense_Mutation p.E47K 0.28 tolerated(0.14) benign(0.04) TCGA-FW-A3R5-06 14 51132005 51132005 G A SAV1 Nonsense_Mutation p.Q143* 0.30 TCGA-FW-A3R5-06 14 51224954 51224954 G A NIN Silent p.L932L 0.28 TCGA-FW-A3R5-06 14 51243806 51243806 G A NIN Missense_Mutation p.S176F 0.23 tolerated(0.31) possibly_damaging(0.786) TCGA-FW-A3R5-06 14 51375642 51375642 G A PYGL Missense_Mutation p.P737S 0.24 tolerated(0.07) benign(0.033) TCGA-FW-A3R5-06 14 51376660 51376660 G A PYGL Silent p.F710F 0.29 TCGA-FW-A3R5-06 14 51379771 51379771 G A PYGL Silent p.L532L 0.30 TCGA-FW-A3R5-06 14 51382068 51382068 G A PYGL Silent p.I463I 0.08 TCGA-FW-A3R5-06 14 51382209 51382209 C T PYGL Silent p.V416V 0.27 TCGA-FW-A3R5-06 14 51382663 51382663 G A PYGL Silent p.F373F 0.14 TCGA-FW-A3R5-06 14 51383417 51383417 G A PYGL Silent p.L345L 0.35 TCGA-FW-A3R5-06 14 51446170 51446170 G A TRIM9 Missense_Mutation p.P669S 0.30 tolerated(0.08) possibly_damaging(0.714) TCGA-FW-A3R5-06 14 51448530 51448530 G A TRIM9 Missense_Mutation p.S632L 0.28 tolerated(0.07) possibly_damaging(0.49) TCGA-FW-A3R5-06 14 51464813 51464813 C T TRIM9 Missense_Mutation p.G520R 0.16 deleterious(0) possibly_damaging(0.616) TCGA-FW-A3R5-06 14 51464870 51464870 C T TRIM9 Missense_Mutation p.D501N 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-FW-A3R5-06 14 51464871 51464871 C T TRIM9 Silent p.V500V 0.24 TCGA-FW-A3R5-06 14 51706911 51706911 G A TMX1 5'UTR 0.62 TCGA-FW-A3R5-06 14 52433336 52433336 C T GNG2 Silent p.P49P 0.22 TCGA-FW-A3R5-06 14 52460467 52460467 C T C14orf166 Silent p.F71F 0.24 TCGA-FW-A3R5-06 14 52495482 52495482 G A NID2 Missense_Mutation p.R830W 0.38 deleterious(0.02) benign(0.097) TCGA-FW-A3R5-06 14 52496389 52496389 C T NID2 Silent p.P759P 0.16 TCGA-FW-A3R5-06 14 52508883 52508883 G A NID2 Silent p.L589L 0.38 TCGA-FW-A3R5-06 14 52520434 52520434 G A NID2 Missense_Mutation p.S431L 0.32 tolerated(0.11) possibly_damaging(0.477) TCGA-FW-A3R5-06 14 52521021 52521021 G A NID2 Silent p.I262I 0.15 TCGA-FW-A3R5-06 14 52534629 52534629 C T NID2 Missense_Mutation p.E161K 0.18 tolerated(0.21) benign(0.033) TCGA-FW-A3R5-06 14 52781635 52781635 G A PTGER2 Silent p.T123T 0.24 TCGA-FW-A3R5-06 14 52781677 52781677 G A PTGER2 Silent p.S137S 0.10 TCGA-FW-A3R5-06 14 53149110 53149110 G A ERO1L Missense_Mutation p.P84L 0.25 deleterious(0) probably_damaging(0.915) TCGA-FW-A3R5-06 14 53326422 53326422 C T FERMT2 Missense_Mutation p.G587S 0.20 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 14 53327118 53327118 C T FERMT2 Missense_Mutation p.M563I 0.13 deleterious(0.01) benign(0.029) TCGA-FW-A3R5-06 14 53347812 53347812 T C FERMT2 Missense_Mutation p.E266G 0.24 deleterious(0.01) possibly_damaging(0.739) TCGA-FW-A3R5-06 14 53560056 53560056 G A DDHD1 Silent p.T373T 0.13 TCGA-FW-A3R5-06 14 54418878 54418878 C T BMP4 Silent p.A21A 0.25 TCGA-FW-A3R5-06 14 55168827 55168827 C T SAMD4A Missense_Mutation p.L82F 0.17 deleterious(0.02) probably_damaging(0.921) TCGA-FW-A3R5-06 14 55903341 55903341 G A TBPL2 Silent p.S182S 0.36 TCGA-FW-A3R5-06 14 55903639 55903639 G A TBPL2 Missense_Mutation p.S83L 0.22 tolerated_low_confidence(0.11) benign(0.023) TCGA-FW-A3R5-06 14 56233097 56233097 G A RP11-813I20.2 Intron 0.28 TCGA-FW-A3R5-06 14 56763866 56763866 C T PELI2 Silent p.F415F 0.14 TCGA-FW-A3R5-06 14 57268695 57268695 G A OTX2 Missense_Mutation p.H218Y 0.27 tolerated(0.89) benign(0.063) TCGA-FW-A3R5-06 14 57270922 57270922 G A OTX2 Missense_Mutation p.P86L 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-FW-A3R5-06 14 57947410 57947410 C T C14orf105 Silent p.R186R 0.28 TCGA-FW-A3R5-06 14 58036612 58036612 G A SLC35F4 Silent p.F376F 0.19 TCGA-FW-A3R5-06 14 58055936 58055936 G A SLC35F4 Silent p.F231F 0.27 TCGA-FW-A3R5-06 14 58063569 58063569 C T SLC35F4 Missense_Mutation p.R16K 0.29 deleterious_low_confidence(0) benign(0.364) TCGA-FW-A3R5-06 14 58563491 58563491 G A C14orf37 Silent p.T680T 0.36 TCGA-FW-A3R5-06 14 58604792 58604792 C T C14orf37 Missense_Mutation p.D429N 0.15 tolerated(0.49) benign(0) TCGA-FW-A3R5-06 14 58606038 58606038 G A C14orf37 Silent p.F13F 0.35 TCGA-FW-A3R5-06 14 58954710 58954710 C T KIAA0586 Missense_Mutation p.S1190F 0.39 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 14 59112786 59112786 C T DACT1 Missense_Mutation p.S482L 0.28 tolerated(0.72) benign(0.007) TCGA-FW-A3R5-06 14 59113078 59113078 G A DACT1 Silent p.V579V 0.24 TCGA-FW-A3R5-06 14 59113756 59113756 C T DACT1 Silent p.P805P 0.24 TCGA-FW-A3R5-06 14 59954436 59954436 G A JKAMP Silent p.Q47Q 0.31 TCGA-FW-A3R5-06 14 59970692 59970692 C T JKAMP Missense_Mutation p.L280F 0.31 tolerated(0.08) benign(0.429) TCGA-FW-A3R5-06 14 60063307 60063307 G A RTN1 3'UTR 0.29 TCGA-FW-A3R5-06 14 60063429 60063429 C T RTN1 3'UTR 0.28 TCGA-FW-A3R5-06 14 60063501 60063501 G A RTN1 Nonsense_Mutation p.Q765* 0.26 TCGA-FW-A3R5-06 14 60069930 60069930 C T RTN1 Silent p.Q743Q 0.32 TCGA-FW-A3R5-06 14 60074101 60074101 G A RTN1 Silent p.A625A 0.09 TCGA-FW-A3R5-06 14 60193679 60193679 G A RTN1 Missense_Mutation p.P575S 0.54 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 14 60212997 60212997 G A RTN1 Silent p.P148P 0.24 TCGA-FW-A3R5-06 14 60591609 60591609 C T PCNXL4 Missense_Mutation p.S673F 0.06 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 14 60592362 60592362 C T PCNXL4 Silent p.L796L 0.56 TCGA-FW-A3R5-06 14 61115508 61115508 T C SIX1 Missense_Mutation p.K134E 0.37 deleterious(0) possibly_damaging(0.85) TCGA-FW-A3R5-06 14 61187102 61187102 G A SIX4 Missense_Mutation p.P309S 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 14 62462974 62462974 G A SYT16 Silent p.E79E 0.09 TCGA-FW-A3R5-06 14 62536530 62536530 G A SYT16 Missense_Mutation p.E245K 0.19 tolerated(0.15) benign(0.012) TCGA-FW-A3R5-06 14 62542072 62542072 C T SYT16 Missense_Mutation p.S319F 0.22 deleterious(0) benign(0.289) TCGA-FW-A3R5-06 14 62547779 62547779 G A SYT16 Silent p.Q407Q 0.23 TCGA-FW-A3R5-06 14 62547881 62547881 G A SYT16 Silent p.R441R 0.23 TCGA-FW-A3R5-06 14 63179424 63179424 G A KCNH5 Intron 0.33 TCGA-FW-A3R5-06 14 63316460 63316460 G A KCNH5 Missense_Mutation p.L494F 0.27 tolerated(0.3) probably_damaging(0.998) TCGA-FW-A3R5-06 14 63416772 63416772 C T KCNH5 Intron 0.40 TCGA-FW-A3R5-06 14 63447955 63447955 G A KCNH5 Missense_Mutation p.P193S 0.37 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 14 64461881 64461881 C T SYNE2 Silent p.I967I 0.19 TCGA-FW-A3R5-06 14 64556357 64556357 C T SYNE2 Silent p.I3912I 0.30 TCGA-FW-A3R5-06 14 64608117 64608117 G A SYNE2 Missense_Mutation p.G5012E 0.21 probably_damaging(1) TCGA-FW-A3R5-06 14 64630177 64630177 C T SYNE2 Silent p.L5453L 0.18 TCGA-FW-A3R5-06 14 64892501 64892501 G A MTHFD1 Nonsense_Mutation p.W303* 0.31 TCGA-FW-A3R5-06 14 65008433 65008433 C T HSPA2 Missense_Mutation p.S289L 0.29 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-FW-A3R5-06 14 65053926 65053926 C T PPP1R36 Silent p.F242F 0.10 TCGA-FW-A3R5-06 14 65055925 65055925 C T PPP1R36 Missense_Mutation p.L380F 0.21 tolerated(0.07) benign(0.021) TCGA-FW-A3R5-06 14 65220510 65220510 C T SPTB Missense_Mutation p.G2116E 0.22 tolerated(0.95) benign(0.001) TCGA-FW-A3R5-06 14 65233350 65233350 C T SPTB Intron 0.23 TCGA-FW-A3R5-06 14 65234028 65234028 C T SPTB Missense_Mutation p.E2088K 0.19 tolerated(0.35) benign(0.014) TCGA-FW-A3R5-06 14 65239396 65239396 C T SPTB Missense_Mutation p.E1819K 0.29 tolerated(0.46) possibly_damaging(0.464) TCGA-FW-A3R5-06 14 65239505 65239505 G A SPTB Silent p.L1782L 0.39 TCGA-FW-A3R5-06 14 65239971 65239971 G A SPTB Silent p.S1715S 0.17 TCGA-FW-A3R5-06 14 65239996 65239996 G A SPTB Missense_Mutation p.S1707L 0.28 deleterious(0.02) benign(0.006) TCGA-FW-A3R5-06 14 65241864 65241864 G A SPTB Silent p.V1607V 0.09 TCGA-FW-A3R5-06 14 65245923 65245923 G A SPTB Silent p.D1505D 0.25 TCGA-FW-A3R5-06 14 65252522 65252522 C T SPTB Missense_Mutation p.E1237K 0.06 tolerated(0.13) benign(0.023) TCGA-FW-A3R5-06 14 65253461 65253461 C T SPTB Silent p.Q1074Q 0.30 TCGA-FW-A3R5-06 14 65253698 65253698 C T SPTB Silent p.R995R 0.34 TCGA-FW-A3R5-06 14 65260194 65260194 C T SPTB Silent p.K729K 0.24 TCGA-FW-A3R5-06 14 65260293 65260293 G A SPTB Silent p.I696I 0.43 TCGA-FW-A3R5-06 14 65262303 65262303 C T SPTB Missense_Mutation p.A466T 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 65263284 65263284 G A SPTB Silent p.L444L 0.16 TCGA-FW-A3R5-06 14 65263330 65263330 C T SPTB Missense_Mutation p.R429Q 0.26 deleterious(0.03) possibly_damaging(0.826) TCGA-FW-A3R5-06 14 65263415 65263415 C T SPTB Missense_Mutation p.E401K 0.20 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 14 65264471 65264471 C T SPTB Silent p.G386G 0.20 TCGA-FW-A3R5-06 14 65264525 65264525 G A SPTB Silent p.T368T 0.10 TCGA-FW-A3R5-06 14 65544090 65544090 G A MAX Intron 0.26 TCGA-FW-A3R5-06 14 65550981 65550981 G A MAX Intron 0.39 TCGA-FW-A3R5-06 14 66209075 66209075 C T FUT8 Nonsense_Mutation p.R559* 0.26 TCGA-FW-A3R5-06 14 67664956 67664956 G A FAM71D Silent p.P26P 0.32 TCGA-FW-A3R5-06 14 67671359 67671359 C T FAM71D Silent p.T155T 0.29 TCGA-FW-A3R5-06 14 67864445 67864445 G A PLEK2 Silent p.P47P 0.22 TCGA-FW-A3R5-06 14 67940062 67940062 G A TMEM229B 3'UTR 0.32 TCGA-FW-A3R5-06 14 67940217 67940217 G A TMEM229B Missense_Mutation p.L142F 0.28 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 14 67940337 67940337 G A TMEM229B Missense_Mutation p.P102S 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 67940338 67940338 G A TMEM229B Silent p.C101C 0.36 TCGA-FW-A3R5-06 14 67940552 67940552 G A TMEM229B Missense_Mutation p.A30V 0.30 tolerated(0.23) benign(0.235) TCGA-FW-A3R5-06 14 68117433 68117433 G C ARG2 Silent p.G287G 0.11 TCGA-FW-A3R5-06 14 68250149 68250149 G A ZFYVE26 Silent p.S1240S 0.38 TCGA-FW-A3R5-06 14 69256436 69256436 G A ZFP36L1 Silent p.F277F 0.25 TCGA-FW-A3R5-06 14 69352210 69352210 G A ACTN1 Silent p.A439A 0.22 TCGA-FW-A3R5-06 14 69376695 69376695 G A ACTN1 Silent p.V164V 0.29 TCGA-FW-A3R5-06 14 69387775 69387775 G A ACTN1 Silent p.A96A 0.23 TCGA-FW-A3R5-06 14 69558597 69558597 G A DCAF5 Silent p.L225L 0.24 TCGA-FW-A3R5-06 14 69814677 69814677 C T GALNT16 Silent p.S499S 0.16 TCGA-FW-A3R5-06 14 69818888 69818888 G A GALNT16 Splice_Site 0.25 TCGA-FW-A3R5-06 14 70238135 70238135 C T SRSF5 Missense_Mutation p.S259F 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 14 70418945 70418945 G A SMOC1 Missense_Mutation p.E64K 0.27 tolerated(0.65) possibly_damaging(0.786) TCGA-FW-A3R5-06 14 70420231 70420231 G A SMOC1 Silent p.E120E 0.13 TCGA-FW-A3R5-06 14 70530546 70530546 G A SLC8A3 Intron 0.09 TCGA-FW-A3R5-06 14 70530586 70530586 G A SLC8A3 Intron 0.24 TCGA-FW-A3R5-06 14 70634006 70634006 C T SLC8A3 Silent p.K378K 0.32 TCGA-FW-A3R5-06 14 70634267 70634267 C T SLC8A3 Missense_Mutation p.M291I 0.36 tolerated(0.33) benign(0.003) TCGA-FW-A3R5-06 14 70634419 70634419 A G SLC8A3 Missense_Mutation p.F241L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 70634749 70634749 C T SLC8A3 Missense_Mutation p.E131K 0.38 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 70635015 70635015 C T SLC8A3 Missense_Mutation p.G42E 0.25 tolerated(0.19) benign(0.06) TCGA-FW-A3R5-06 14 70635117 70635117 G A SLC8A3 Missense_Mutation p.P8L 0.29 deleterious_low_confidence(0.04) benign(0.341) TCGA-FW-A3R5-06 14 70713148 70713148 C T ADAM21P1 RNA 0.24 TCGA-FW-A3R5-06 14 70713226 70713226 C T ADAM21P1 RNA 0.29 TCGA-FW-A3R5-06 14 70713515 70713515 G A ADAM21P1 RNA 0.32 TCGA-FW-A3R5-06 14 70714363 70714363 C T ADAM21P1 RNA 0.32 TCGA-FW-A3R5-06 14 70842434 70842434 G A SYNJ2BP Missense_Mutation p.R86C 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 14 70924276 70924276 G A ADAM21 Silent p.G20G 0.30 TCGA-FW-A3R5-06 14 70924606 70924606 G A ADAM21 Silent p.G130G 0.27 TCGA-FW-A3R5-06 14 70926082 70926082 G A ADAM21 Silent p.K622K 0.12 TCGA-FW-A3R5-06 14 70926127 70926127 G A ADAM21 Silent p.E637E 0.28 TCGA-FW-A3R5-06 14 70926258 70926258 G A ADAM21 Missense_Mutation p.G681E 0.41 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 14 70991276 70991276 A G ADAM20 Missense_Mutation p.F117L 0.27 tolerated(0.07) benign(0.009) TCGA-FW-A3R5-06 14 70991597 70991597 G A ADAM20 Missense_Mutation p.P10S 0.30 tolerated_low_confidence(0.14) benign(0.009) TCGA-FW-A3R5-06 14 71200008 71200008 G A MAP3K9 Missense_Mutation p.S707L 0.29 tolerated(0.76) possibly_damaging(0.487) TCGA-FW-A3R5-06 14 71267481 71267481 G A MAP3K9 Silent p.I241I 0.12 TCGA-FW-A3R5-06 14 71267675 71267675 G A MAP3K9 Missense_Mutation p.P177S 0.09 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 14 71267772 71267772 G A MAP3K9 Silent p.L144L 0.28 TCGA-FW-A3R5-06 14 71444949 71444949 C T PCNX Missense_Mutation p.S632F 0.17 deleterious(0) benign(0.439) TCGA-FW-A3R5-06 14 71485759 71485759 C T PCNX Silent p.V1010V 0.26 TCGA-FW-A3R5-06 14 71511997 71511997 C T PCNX Nonsense_Mutation p.R1339* 0.28 TCGA-FW-A3R5-06 14 71575494 71575494 C T PCNX Nonsense_Mutation p.R2159* 0.14 TCGA-FW-A3R5-06 14 72085567 72085567 C T SIPA1L1 Missense_Mutation p.S531F 0.26 tolerated(0.06) benign(0.235) TCGA-FW-A3R5-06 14 72152307 72152307 C T SIPA1L1 Silent p.I1111I 0.27 TCGA-FW-A3R5-06 14 72169145 72169145 C T SIPA1L1 Missense_Mutation p.T1190I 0.36 tolerated(0.4) benign(0.057) TCGA-FW-A3R5-06 14 72176258 72176258 G A SIPA1L1 Missense_Mutation p.G1383D 0.32 tolerated(0.14) benign(0.044) TCGA-FW-A3R5-06 14 72190375 72190375 C T SIPA1L1 Missense_Mutation p.S1428F 0.26 tolerated(0.36) probably_damaging(0.982) TCGA-FW-A3R5-06 14 72431580 72431580 C T RGS6 Silent p.I24I 0.28 TCGA-FW-A3R5-06 14 72926360 72926360 G A RGS6 Silent p.S121S 0.21 TCGA-FW-A3R5-06 14 72941367 72941367 G A RGS6 Missense_Mutation p.R218Q 0.32 deleterious(0.05) benign(0.011) TCGA-FW-A3R5-06 14 73159785 73159785 C T DPF3 Silent p.R247R 0.10 TCGA-FW-A3R5-06 14 73490866 73490866 A C ZFYVE1 Silent p.P117P 0.28 TCGA-FW-A3R5-06 14 73721613 73721613 G A PAPLN Missense_Mutation p.R478Q 0.20 deleterious(0) benign(0.394) TCGA-FW-A3R5-06 14 73731423 73731423 G A PAPLN Silent p.Q1011Q 0.30 TCGA-FW-A3R5-06 14 73735384 73735384 G A PAPLN Missense_Mutation p.G1180E 0.30 deleterious(0.01) possibly_damaging(0.888) TCGA-FW-A3R5-06 14 73959880 73959880 C T HEATR4 Intron 0.18 TCGA-FW-A3R5-06 14 74180469 74180469 T G PNMA1 5'UTR 0.22 TCGA-FW-A3R5-06 14 74562682 74562682 C T LIN52 Silent p.F46F 0.25 TCGA-FW-A3R5-06 14 74711967 74711967 G A VSX2 Silent p.T185T 0.21 TCGA-FW-A3R5-06 14 74711968 74711968 G A VSX2 Missense_Mutation p.E186K 0.21 deleterious(0.03) benign(0.371) TCGA-FW-A3R5-06 14 74726416 74726416 C T VSX2 Missense_Mutation p.P231S 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 74823635 74823635 G A VRTN Missense_Mutation p.G50D 0.09 tolerated(0.37) benign(0.009) TCGA-FW-A3R5-06 14 74824431 74824431 C T VRTN Silent p.S315S 0.23 TCGA-FW-A3R5-06 14 74824584 74824584 G A VRTN Silent p.R366R 0.36 TCGA-FW-A3R5-06 14 74825080 74825080 C T VRTN Missense_Mutation p.R532C 0.24 deleterious(0) possibly_damaging(0.87) TCGA-FW-A3R5-06 14 74825147 74825147 G A VRTN Missense_Mutation p.G554D 0.28 tolerated(0.51) benign(0.054) TCGA-FW-A3R5-06 14 74825433 74825433 G A VRTN Silent p.T649T 0.30 TCGA-FW-A3R5-06 14 74825599 74825599 G A VRTN 3'UTR 0.24 TCGA-FW-A3R5-06 14 74874107 74874107 G A SYNDIG1L 3'UTR 0.30 TCGA-FW-A3R5-06 14 74874255 74874255 G A SYNDIG1L Nonsense_Mutation p.Q234* 0.28 TCGA-FW-A3R5-06 14 74876271 74876271 G A SYNDIG1L Silent p.S59S 0.22 TCGA-FW-A3R5-06 14 74876456 74876456 G A SYNDIG1L 5'UTR 0.27 TCGA-FW-A3R5-06 14 74973960 74973960 C T LTBP2 Missense_Mutation p.E1277K 0.24 tolerated(0.1) probably_damaging(0.999) TCGA-FW-A3R5-06 14 74975996 74975996 G A LTBP2 Silent p.S1116S 0.24 TCGA-FW-A3R5-06 14 74976528 74976528 G A LTBP2 Silent p.P1062P 0.07 TCGA-FW-A3R5-06 14 74978059 74978059 C T LTBP2 Missense_Mutation p.E973K 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 75017841 75017841 G A LTBP2 Missense_Mutation p.R538W 0.23 deleterious(0) possibly_damaging(0.708) TCGA-FW-A3R5-06 14 75019754 75019754 T A LTBP2 Missense_Mutation p.T345S 0.16 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 75022211 75022211 G A LTBP2 Missense_Mutation p.P339L 0.14 tolerated(0.09) benign(0.004) TCGA-FW-A3R5-06 14 75022292 75022292 G A LTBP2 Missense_Mutation p.S312F 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-FW-A3R5-06 14 75136681 75136681 G A AREL1 Missense_Mutation p.A586V 0.27 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 75136738 75136738 G A AREL1 Missense_Mutation p.S567F 0.07 deleterious(0) possibly_damaging(0.828) TCGA-FW-A3R5-06 14 75150111 75150111 G A AREL1 Silent p.S123S 0.17 TCGA-FW-A3R5-06 14 75230628 75230628 C T YLPM1 Missense_Mutation p.P146S 0.45 unknown(0) TCGA-FW-A3R5-06 14 75248565 75248565 C T YLPM1 Missense_Mutation p.P607S 0.35 unknown(0) TCGA-FW-A3R5-06 14 75248676 75248676 C T YLPM1 Missense_Mutation p.P644S 0.29 possibly_damaging(0.803) TCGA-FW-A3R5-06 14 75265490 75265490 C T YLPM1 Missense_Mutation p.R1164C 0.12 probably_damaging(0.917) TCGA-FW-A3R5-06 14 75266120 75266120 C T YLPM1 Nonsense_Mutation p.R1374* 0.18 TCGA-FW-A3R5-06 14 75276414 75276414 C T YLPM1 Missense_Mutation p.P1618L 0.17 benign(0.13) TCGA-FW-A3R5-06 14 75325210 75325210 T G PROX2 Intron 0.50 TCGA-FW-A3R5-06 14 75329450 75329450 G A PROX2 Intron 0.33 TCGA-FW-A3R5-06 14 75388145 75388145 G A RPS6KL1 Missense_Mutation p.R34C 0.09 tolerated(0.06) benign(0.035) TCGA-FW-A3R5-06 14 75416173 75416173 C T PGF Missense_Mutation p.E68K 0.23 deleterious(0.02) benign(0.079) TCGA-FW-A3R5-06 14 75500155 75500155 G A MLH3 Missense_Mutation p.H1228Y 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 75514208 75514208 G A MLH3 Silent p.F717F 0.27 TCGA-FW-A3R5-06 14 75563921 75563921 G A NEK9 Silent p.T685T 0.37 TCGA-FW-A3R5-06 14 75928233 75928233 G A JDP2 Silent p.R113R 0.20 TCGA-FW-A3R5-06 14 76013005 76013005 C G BATF Missense_Mutation p.F123L 0.33 tolerated_low_confidence(0.11) benign(0.369) TCGA-FW-A3R5-06 14 76013010 76013010 C T BATF Missense_Mutation p.P125L 0.30 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 14 76149896 76149896 C T TTLL5 Missense_Mutation p.H90Y 0.25 deleterious(0.01) benign(0.35) TCGA-FW-A3R5-06 14 76232504 76232504 C T TTLL5 Missense_Mutation p.S603F 0.33 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 14 76368516 76368516 C T TTLL5 Missense_Mutation p.L1258F 0.17 tolerated_low_confidence(1) benign(0.002) TCGA-FW-A3R5-06 14 76647109 76647109 C T GPATCH2L Silent p.F370F 0.09 TCGA-FW-A3R5-06 14 76928970 76928970 C T ESRRB Silent p.F160F 0.31 TCGA-FW-A3R5-06 14 76957805 76957805 C T ESRRB Missense_Mutation p.S268F 0.23 deleterious(0.03) benign(0.177) TCGA-FW-A3R5-06 14 76965231 76965231 G A ESRRB Intron 0.31 TCGA-FW-A3R5-06 14 76967114 76967114 C T ESRRB 3'UTR 0.35 TCGA-FW-A3R5-06 14 77229182 77229182 G A VASH1 Silent p.K6K 0.60 TCGA-FW-A3R5-06 14 77245439 77245439 G A VASH1 3'UTR 0.32 TCGA-FW-A3R5-06 14 77255465 77255465 G A ANGEL1 3'UTR 0.38 TCGA-FW-A3R5-06 14 77270191 77270191 G A ANGEL1 Missense_Mutation p.P482L 0.28 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 14 77274304 77274304 G A ANGEL1 Silent p.F279F 0.28 TCGA-FW-A3R5-06 14 77292955 77292955 G A C14orf166B Intron 0.23 TCGA-FW-A3R5-06 14 77336513 77336513 G A C14orf166B 3'UTR 0.46 TCGA-FW-A3R5-06 14 77492582 77492582 G A IRF2BPL Silent p.P518P 0.56 TCGA-FW-A3R5-06 14 77600103 77600103 C T ZDHHC22 Missense_Mutation p.G239R 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 77715711 77715711 G A TMEM63C Missense_Mutation p.E650K 0.28 tolerated(1) possibly_damaging(0.531) TCGA-FW-A3R5-06 14 77719701 77719701 C T TMEM63C Silent p.S734S 0.24 TCGA-FW-A3R5-06 14 77723119 77723119 C T TMEM63C 3'UTR 0.36 TCGA-FW-A3R5-06 14 77732710 77732710 C T NGB 3'UTR 0.29 TCGA-FW-A3R5-06 14 77732796 77732796 G A NGB 3'UTR 0.13 TCGA-FW-A3R5-06 14 77732806 77732806 G A NGB 3'UTR 0.22 TCGA-FW-A3R5-06 14 77732837 77732837 G A NGB 3'UTR 0.29 TCGA-FW-A3R5-06 14 77750178 77750178 G A POMT2 Missense_Mutation p.P539S 0.29 tolerated(0.32) benign(0.001) TCGA-FW-A3R5-06 14 77778331 77778331 G A POMT2 Silent p.N98N 0.13 TCGA-FW-A3R5-06 14 77861022 77861022 G A NOXRED1 Silent p.S344S 0.33 TCGA-FW-A3R5-06 14 77910637 77910637 G A VIPAS39 Silent p.L184L 0.25 TCGA-FW-A3R5-06 14 77944600 77944600 C T ISM2 Missense_Mutation p.D395N 0.16 deleterious(0.01) possibly_damaging(0.811) TCGA-FW-A3R5-06 14 77945045 77945045 C T ISM2 Silent p.Q329Q 0.35 TCGA-FW-A3R5-06 14 77948989 77948989 C T ISM2 Missense_Mutation p.D217N 0.30 deleterious(0.01) possibly_damaging(0.811) TCGA-FW-A3R5-06 14 77950759 77950759 G A ISM2 Silent p.P178P 0.08 TCGA-FW-A3R5-06 14 77951244 77951244 G A ISM2 Missense_Mutation p.P54S 0.08 tolerated_low_confidence(0.15) possibly_damaging(0.699) TCGA-FW-A3R5-06 14 78021720 78021720 G A SPTLC2 Missense_Mutation p.P367S 0.35 deleterious(0.02) possibly_damaging(0.654) TCGA-FW-A3R5-06 14 78142163 78142163 G A ALKBH1 Silent p.F192F 0.21 TCGA-FW-A3R5-06 14 78353570 78353570 C T ADCK1 Missense_Mutation p.S187L 0.25 tolerated(0.65) benign(0.002) TCGA-FW-A3R5-06 14 79434665 79434665 G A NRXN3 Missense_Mutation p.G667R 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 14 79434686 79434686 G A NRXN3 Missense_Mutation p.E674K 0.32 tolerated(0.11) possibly_damaging(0.797) TCGA-FW-A3R5-06 14 79454396 79454396 T G NRXN3 Missense_Mutation p.C685W 0.31 deleterious(0) benign(0.023) TCGA-FW-A3R5-06 14 80668670 80668670 C T DIO2 3'Flank 0.16 TCGA-FW-A3R5-06 14 80668791 80668791 C T DIO2 3'Flank 0.26 TCGA-FW-A3R5-06 14 80669017 80669017 C T DIO2 3'UTR 0.36 TCGA-FW-A3R5-06 14 80669428 80669428 G A DIO2 Silent p.A178A 0.19 TCGA-FW-A3R5-06 14 80993272 80993272 G A CEP128 Missense_Mutation p.R1005C 0.19 tolerated(0.18) benign(0.417) TCGA-FW-A3R5-06 14 81251698 81251698 G A CEP128 Silent p.S584S 0.23 TCGA-FW-A3R5-06 14 81251861 81251861 G A CEP128 Missense_Mutation p.T530I 0.25 deleterious(0.02) benign(0.029) TCGA-FW-A3R5-06 14 81304583 81304583 G A CEP128 Nonsense_Mutation p.Q297* 0.10 TCGA-FW-A3R5-06 14 81422098 81422098 C T TSHR Missense_Mutation p.S25L 0.29 tolerated(0.79) benign(0.001) TCGA-FW-A3R5-06 14 81610660 81610660 G A TSHR Missense_Mutation p.G753D 0.25 tolerated_low_confidence(0.52) benign(0.005) TCGA-FW-A3R5-06 14 81743479 81743479 C T STON2 Missense_Mutation p.E726K 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 81743738 81743738 C T STON2 Nonsense_Mutation p.W639* 0.27 TCGA-FW-A3R5-06 14 81743739 81743739 C T STON2 Nonsense_Mutation p.W639* 0.26 TCGA-FW-A3R5-06 14 81744902 81744902 C T STON2 Silent p.L251L 0.10 TCGA-FW-A3R5-06 14 81744996 81744996 G A STON2 Missense_Mutation p.P220L 0.33 tolerated_low_confidence(0.06) benign(0.005) TCGA-FW-A3R5-06 14 81864669 81864669 C T STON2 Missense_Mutation p.E20K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-FW-A3R5-06 14 81864696 81864696 G A STON2 Missense_Mutation p.H11Y 0.24 deleterious_low_confidence(0) benign(0.005) TCGA-FW-A3R5-06 14 81864769 81864769 G A STON2 5'UTR 0.19 TCGA-FW-A3R5-06 14 86088013 86088013 G A FLRT2 Missense_Mutation p.R52Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 14 86088044 86088044 G A FLRT2 Silent p.P62P 0.18 TCGA-FW-A3R5-06 14 86088099 86088099 C T FLRT2 Missense_Mutation p.P81S 0.25 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3R5-06 14 86089439 86089439 C T FLRT2 Silent p.S527S 0.28 TCGA-FW-A3R5-06 14 86089930 86089930 G A FLRT2 3'UTR 0.25 TCGA-FW-A3R5-06 14 88414169 88414169 G A GALC Silent p.F464F 0.24 TCGA-FW-A3R5-06 14 88429746 88429746 G A GALC Silent p.T381T 0.25 TCGA-FW-A3R5-06 14 88477323 88477323 G A GPR65 Silent p.K44K 0.08 TCGA-FW-A3R5-06 14 88477672 88477672 G A GPR65 Missense_Mutation p.D161N 0.22 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 14 88477849 88477849 G A GPR65 Missense_Mutation p.E220K 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 14 88478074 88478074 G A GPR65 Missense_Mutation p.E295K 0.15 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 14 88658671 88658671 G A KCNK10 Silent p.I255I 0.23 TCGA-FW-A3R5-06 14 89078086 89078086 C T ZC3H14 Intron 0.22 TCGA-FW-A3R5-06 14 89878700 89878700 G A FOXN3 Missense_Mutation p.L41F 0.35 tolerated(0.1) possibly_damaging(0.754) TCGA-FW-A3R5-06 14 90397920 90397920 G A EFCAB11 Silent p.P125P 0.30 TCGA-FW-A3R5-06 14 90450874 90450874 C T TDP1 Missense_Mutation p.P300L 0.19 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 14 90485726 90485726 C T TDP1 Silent p.S536S 0.16 TCGA-FW-A3R5-06 14 90509483 90509483 C T TDP1 Missense_Mutation p.S608F 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 90650927 90650927 C T KCNK13 Silent p.V269V 0.29 TCGA-FW-A3R5-06 14 90651043 90651043 G A KCNK13 Missense_Mutation p.R308Q 0.32 tolerated(0.13) benign(0.01) TCGA-FW-A3R5-06 14 90651116 90651116 G A KCNK13 Silent p.V332V 0.33 TCGA-FW-A3R5-06 14 90770546 90770546 G A NRDE2 Silent p.P246P 0.26 TCGA-FW-A3R5-06 14 90770548 90770548 G A NRDE2 Missense_Mutation p.P246S 0.26 tolerated(0.47) benign(0.001) TCGA-FW-A3R5-06 14 91113270 91113270 T C TTC7B Intron 0.31 TCGA-FW-A3R5-06 14 91444808 91444808 G A RPS6KA5 Missense_Mutation p.A79V 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 91647573 91647573 G A C14orf159 Missense_Mutation p.M258I 0.37 tolerated(0.65) benign(0.002) TCGA-FW-A3R5-06 14 91701504 91701504 C T GPR68 5'UTR 0.55 TCGA-FW-A3R5-06 14 91738855 91738855 C T CCDC88C 3'UTR 0.36 TCGA-FW-A3R5-06 14 91739116 91739116 C T CCDC88C Silent p.K1980K 0.35 TCGA-FW-A3R5-06 14 91739130 91739130 C T CCDC88C Missense_Mutation p.G1976R 0.17 tolerated(0.08) probably_damaging(0.966) TCGA-FW-A3R5-06 14 91744422 91744422 G A CCDC88C Silent p.P1634P 0.32 TCGA-FW-A3R5-06 14 91755509 91755509 G A CCDC88C Missense_Mutation p.P1461S 0.33 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 14 91766302 91766302 C T CCDC88C Missense_Mutation p.E1250K 0.25 deleterious(0.02) possibly_damaging(0.842) TCGA-FW-A3R5-06 14 91779643 91779643 C T CCDC88C Silent p.K839K 0.25 TCGA-FW-A3R5-06 14 91779837 91779837 G A CCDC88C Silent p.L775L 0.35 TCGA-FW-A3R5-06 14 91780176 91780176 C T CCDC88C Missense_Mutation p.E662K 0.18 tolerated(0.06) benign(0.026) TCGA-FW-A3R5-06 14 91805699 91805699 G A CCDC88C Silent p.L244L 0.24 TCGA-FW-A3R5-06 14 92102845 92102845 G A CATSPERB Missense_Mutation p.P556S 0.16 tolerated(0.1) benign(0.319) TCGA-FW-A3R5-06 14 92102891 92102891 G A CATSPERB Silent p.A540A 0.23 TCGA-FW-A3R5-06 14 92150276 92150276 C T CATSPERB Silent p.V292V 0.25 TCGA-FW-A3R5-06 14 92191472 92191472 G A CATSPERB Silent p.F40F 0.30 TCGA-FW-A3R5-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.28 TCGA-FW-A3R5-06 14 92278668 92278668 C T TC2N Missense_Mutation p.E97K 0.27 tolerated(0.58) benign(0.097) TCGA-FW-A3R5-06 14 92347740 92347740 C T FBLN5 Silent p.R295R 0.29 TCGA-FW-A3R5-06 14 92353616 92353616 G A FBLN5 Silent p.T220T 0.33 TCGA-FW-A3R5-06 14 92435910 92435910 G A TRIP11 3'UTR 0.33 TCGA-FW-A3R5-06 14 92470193 92470193 G A TRIP11 Missense_Mutation p.S1376L 0.32 deleterious(0.02) benign(0.238) TCGA-FW-A3R5-06 14 92484090 92484090 G A TRIP11 Missense_Mutation p.S198F 0.17 deleterious(0.04) possibly_damaging(0.672) TCGA-FW-A3R5-06 14 92488054 92488054 G A TRIP11 Missense_Mutation p.S145L 0.34 deleterious(0.03) benign(0.281) TCGA-FW-A3R5-06 14 92905734 92905734 C T SLC24A4 Missense_Mutation p.S125F 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 92915537 92915537 C T SLC24A4 Missense_Mutation p.P286L 0.28 tolerated(0.32) benign(0.008) TCGA-FW-A3R5-06 14 93119327 93119327 C T RIN3 Missense_Mutation p.R645C 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 93125602 93125602 C T RIN3 Missense_Mutation p.S708L 0.22 deleterious(0) possibly_damaging(0.862) TCGA-FW-A3R5-06 14 93125795 93125795 C T RIN3 Silent p.S772S 0.23 TCGA-FW-A3R5-06 14 93142930 93142930 C T RIN3 Missense_Mutation p.P816S 0.18 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 14 93179168 93179168 G A LGMN Silent p.L198L 0.13 TCGA-FW-A3R5-06 14 93185157 93185157 G A LGMN Silent p.H57H 0.24 TCGA-FW-A3R5-06 14 93390581 93390581 G A CHGA Silent p.G28G 0.30 TCGA-FW-A3R5-06 14 93398965 93398965 G A CHGA Silent p.T353T 0.31 TCGA-FW-A3R5-06 14 93408217 93408217 G A ITPK1 Missense_Mutation p.L312F 0.15 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 14 93483112 93483112 G A ITPK1 Missense_Mutation p.P52L 0.21 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 14 93483113 93483113 G A ITPK1 Missense_Mutation p.P52S 0.21 deleterious(0) possibly_damaging(0.659) TCGA-FW-A3R5-06 14 93943946 93943946 C T UNC79 5'UTR 0.30 TCGA-FW-A3R5-06 14 94044314 94044314 G A UNC79 Missense_Mutation p.G603R 0.32 tolerated(0.13) possibly_damaging(0.802) TCGA-FW-A3R5-06 14 94069757 94069757 C T UNC79 Silent p.S1072S 0.16 TCGA-FW-A3R5-06 14 94083510 94083510 T G UNC79 Missense_Mutation p.L1185V 0.15 tolerated(0.14) probably_damaging(0.995) TCGA-FW-A3R5-06 14 94083536 94083536 C T UNC79 Silent p.C1193C 0.27 TCGA-FW-A3R5-06 14 94088494 94088494 C T UNC79 Missense_Mutation p.P1462S 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 14 94088532 94088532 G A UNC79 Silent p.T1474T 0.26 TCGA-FW-A3R5-06 14 94100891 94100891 G A UNC79 Missense_Mutation p.G1737E 0.29 deleterious_low_confidence(0) possibly_damaging(0.597) TCGA-FW-A3R5-06 14 94109943 94109943 G A UNC79 Missense_Mutation p.E1844K 0.32 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 14 94112962 94112962 C T UNC79 Missense_Mutation p.S1880F 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 14 94156635 94156635 C T UNC79 Missense_Mutation p.P2282S 0.15 tolerated(0.13) benign(0.094) TCGA-FW-A3R5-06 14 94158125 94158125 C T UNC79 Missense_Mutation p.H2297Y 0.27 deleterious(0.01) possibly_damaging(0.563) TCGA-FW-A3R5-06 14 94173221 94173221 G A UNC79 Missense_Mutation p.E2450K 0.22 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 14 94187839 94187839 C T PRIMA1 Missense_Mutation p.S138N 0.15 deleterious(0.01) benign(0.026) TCGA-FW-A3R5-06 14 94203587 94203587 C T PRIMA1 Missense_Mutation p.R120K 0.26 deleterious(0) possibly_damaging(0.742) TCGA-FW-A3R5-06 14 94203637 94203637 G A PRIMA1 Silent p.S103S 0.23 TCGA-FW-A3R5-06 14 94394620 94394620 G A FAM181A Missense_Mutation p.G59S 0.31 deleterious_low_confidence(0.02) benign(0.357) TCGA-FW-A3R5-06 14 94394743 94394743 C T FAM181A Missense_Mutation p.R100C 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 94395108 94395108 C T FAM181A Silent p.P221P 0.28 TCGA-FW-A3R5-06 14 94395551 94395551 G A FAM181A 3'UTR 0.32 TCGA-FW-A3R5-06 14 94395585 94395585 G A FAM181A 3'UTR 0.26 TCGA-FW-A3R5-06 14 94467737 94467737 C T LINC00521 RNA 0.56 TCGA-FW-A3R5-06 14 94510998 94510998 G A OTUB2 Missense_Mutation p.D124N 0.24 deleterious(0.02) benign(0.145) TCGA-FW-A3R5-06 14 94527347 94527347 G A DDX24 Missense_Mutation p.R437C 0.29 tolerated(0.14) benign(0.004) TCGA-FW-A3R5-06 14 94563264 94563264 C T IFI27L1 5'UTR 0.21 TCGA-FW-A3R5-06 14 94578046 94578046 C T IFI27 Silent p.L6L 0.14 TCGA-FW-A3R5-06 14 94578120 94578120 G A IFI27 Splice_Site p.X31_splice 0.21 TCGA-FW-A3R5-06 14 94594116 94594116 G A IFI27L2 3'Flank 0.25 TCGA-FW-A3R5-06 14 94674845 94674845 C T PPP4R4 Missense_Mutation p.P79L 0.22 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 14 94696948 94696948 G A PPP4R4 Missense_Mutation p.E107K 0.19 deleterious(0.01) possibly_damaging(0.894) TCGA-FW-A3R5-06 14 94697645 94697645 G A PPP4R4 Missense_Mutation p.R170Q 0.29 deleterious(0.01) benign(0.046) TCGA-FW-A3R5-06 14 94700010 94700010 C T PPP4R4 Silent p.S179S 0.22 TCGA-FW-A3R5-06 14 94700041 94700041 C T PPP4R4 Missense_Mutation p.R190C 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 94703957 94703957 G A PPP4R4 Missense_Mutation p.E263K 0.28 deleterious(0.01) possibly_damaging(0.86) TCGA-FW-A3R5-06 14 94707034 94707034 C T PPP4R4 Missense_Mutation p.P293L 0.23 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 14 94711930 94711930 G A PPP4R4 Missense_Mutation p.D451N 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-FW-A3R5-06 14 94716543 94716543 C T PPP4R4 Missense_Mutation p.T549I 0.33 deleterious(0) possibly_damaging(0.868) TCGA-FW-A3R5-06 14 94718186 94718186 C T PPP4R4 Silent p.F606F 0.31 TCGA-FW-A3R5-06 14 94722800 94722800 G A PPP4R4 Missense_Mutation p.M623I 0.38 tolerated(0.29) benign(0.002) TCGA-FW-A3R5-06 14 94731275 94731275 G A PPP4R4 Missense_Mutation p.E730K 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-FW-A3R5-06 14 94750236 94750236 C T SERPINA10 3'UTR 0.43 TCGA-FW-A3R5-06 14 94754660 94754660 C T SERPINA10 Missense_Mutation p.D319N 0.10 deleterious(0) benign(0.29) TCGA-FW-A3R5-06 14 94756444 94756444 C T SERPINA10 Missense_Mutation p.G163R 0.29 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 14 94776126 94776126 G A SERPINA6 Silent p.I277I 0.27 TCGA-FW-A3R5-06 14 94844781 94844781 G A SERPINA1 3'UTR 0.27 TCGA-FW-A3R5-06 14 94845910 94845910 C T SERPINA1 Missense_Mutation p.G319E 0.09 deleterious(0.03) probably_damaging(0.97) TCGA-FW-A3R5-06 14 94847297 94847297 G A SERPINA1 Silent p.F276F 0.34 TCGA-FW-A3R5-06 14 94847393 94847393 C T SERPINA1 Missense_Mutation p.M244I 0.13 deleterious(0.03) possibly_damaging(0.825) TCGA-FW-A3R5-06 14 94849449 94849449 C T SERPINA1 Silent p.Q42Q 0.17 TCGA-FW-A3R5-06 14 94909498 94909498 G A SERPINA11 Missense_Mutation p.P328S 0.27 tolerated(0.12) benign(0.385) TCGA-FW-A3R5-06 14 94914801 94914801 C T SERPINA11 Missense_Mutation p.G104E 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 14 94915077 94915077 C T SERPINA11 Missense_Mutation p.G12E 0.25 tolerated(0.11) benign(0.027) TCGA-FW-A3R5-06 14 94929538 94929538 G A SERPINA9 Silent p.P400P 0.20 TCGA-FW-A3R5-06 14 94933565 94933565 C T SERPINA9 Missense_Mutation p.M279I 0.27 tolerated(0.64) probably_damaging(0.993) TCGA-FW-A3R5-06 14 94933697 94933697 G A SERPINA9 Silent p.H235H 0.28 TCGA-FW-A3R5-06 14 94935629 94935629 G A SERPINA9 Silent p.T201T 0.25 TCGA-FW-A3R5-06 14 94935757 94935757 C T SERPINA9 Missense_Mutation p.E159K 0.10 tolerated(0.28) possibly_damaging(0.461) TCGA-FW-A3R5-06 14 94962931 94962931 G A SERPINA12 Silent p.F228F 0.32 TCGA-FW-A3R5-06 14 95030026 95030026 G A SERPINA4 Silent p.E69E 0.30 TCGA-FW-A3R5-06 14 95030033 95030033 G A SERPINA4 Missense_Mutation p.G72R 0.30 tolerated(0.21) benign(0.05) TCGA-FW-A3R5-06 14 95033491 95033491 C T SERPINA4 Silent p.F278F 0.38 TCGA-FW-A3R5-06 14 95033554 95033554 G A SERPINA4 Missense_Mutation p.M299I 0.25 tolerated(0.18) benign(0.005) TCGA-FW-A3R5-06 14 95035980 95035980 G A SERPINA4 3'UTR 0.24 TCGA-FW-A3R5-06 14 95053750 95053750 C T SERPINA5 Silent p.A17A 0.29 TCGA-FW-A3R5-06 14 95056388 95056388 G A SERPINA5 Silent p.E210E 0.40 TCGA-FW-A3R5-06 14 95057176 95057176 C T SERPINA5 Silent p.F327F 0.26 TCGA-FW-A3R5-06 14 95058564 95058564 G A SERPINA5 Silent p.V403V 0.32 TCGA-FW-A3R5-06 14 95085657 95085657 G A SERPINA3 Missense_Mutation p.E257K 0.37 tolerated(0.16) benign(0.297) TCGA-FW-A3R5-06 14 95085787 95085787 G A SERPINA3 Missense_Mutation p.R300K 0.18 tolerated(0.53) benign(0.014) TCGA-FW-A3R5-06 14 95088716 95088716 C T SERPINA3 Missense_Mutation p.S319L 0.19 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 14 95090041 95090041 G A SERPINA3 Missense_Mutation p.E388K 0.26 tolerated(0.97) benign(0) TCGA-FW-A3R5-06 14 95107144 95107144 C T SERPINA13P RNA 0.31 TCGA-FW-A3R5-06 14 95107644 95107644 G A SERPINA13P RNA 0.25 TCGA-FW-A3R5-06 14 95108164 95108164 G A SERPINA13P RNA 0.24 TCGA-FW-A3R5-06 14 95109994 95109994 C T SERPINA13P RNA 0.26 TCGA-FW-A3R5-06 14 95111341 95111341 G A SERPINA13P RNA 0.21 TCGA-FW-A3R5-06 14 95670166 95670166 G A CLMN Missense_Mutation p.S507F 0.27 tolerated_low_confidence(0.15) benign(0.004) TCGA-FW-A3R5-06 14 95921884 95921884 G A SYNE3 Silent p.L323L 0.27 TCGA-FW-A3R5-06 14 95932532 95932532 G A SYNE3 Silent p.A121A 0.14 TCGA-FW-A3R5-06 14 96134618 96134618 C T TCL6 Intron 0.26 TCGA-FW-A3R5-06 14 96134679 96134679 C T TCL6 Intron 0.17 TCGA-FW-A3R5-06 14 96157628 96157628 C T TCL1B Silent p.V119V 0.26 TCGA-FW-A3R5-06 14 96178115 96178115 G A TCL1A Missense_Mutation p.L108F 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 14 96707226 96707226 C T BDKRB2 Silent p.L187L 0.22 TCGA-FW-A3R5-06 14 96730073 96730073 C T BDKRB1 Silent p.L18L 0.35 TCGA-FW-A3R5-06 14 96730546 96730546 G A BDKRB1 Missense_Mutation p.R176Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 14 96730673 96730673 C T BDKRB1 Silent p.I218I 0.22 TCGA-FW-A3R5-06 14 96731038 96731038 C T BDKRB1 Missense_Mutation p.S340L 0.30 tolerated(0.67) benign(0.001) TCGA-FW-A3R5-06 14 96777479 96777479 G A ATG2B Missense_Mutation p.P1379L 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-FW-A3R5-06 14 96781867 96781867 G T ATG2B Missense_Mutation p.R1139S 0.15 tolerated(0.18) possibly_damaging(0.906) TCGA-FW-A3R5-06 14 96788538 96788538 G A ATG2B Silent p.I930I 0.36 TCGA-FW-A3R5-06 14 96790332 96790332 G A ATG2B Missense_Mutation p.S814L 0.21 tolerated(0.52) probably_damaging(0.921) TCGA-FW-A3R5-06 14 96792160 96792160 G A ATG2B Missense_Mutation p.R755C 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-FW-A3R5-06 14 96875242 96875242 G A AK7 Silent p.T154T 0.20 TCGA-FW-A3R5-06 14 96904252 96904252 G A AK7 Silent p.K230K 0.08 TCGA-FW-A3R5-06 14 96909112 96909112 G A AK7 Missense_Mutation p.G246R 0.30 deleterious(0) possibly_damaging(0.621) TCGA-FW-A3R5-06 14 96916161 96916161 C T AK7 Missense_Mutation p.P298L 0.33 deleterious(0) possibly_damaging(0.615) TCGA-FW-A3R5-06 14 96937826 96937826 G A AK7 Missense_Mutation p.D457N 0.14 tolerated(0.07) probably_damaging(0.945) TCGA-FW-A3R5-06 14 96937849 96937849 G A AK7 Missense_Mutation p.M464I 0.28 tolerated(0.46) benign(0.004) TCGA-FW-A3R5-06 14 96944880 96944880 G A AK7 Missense_Mutation p.G545E 0.24 tolerated(0.28) probably_damaging(0.945) TCGA-FW-A3R5-06 14 97002296 97002296 C T PAPOLA Silent p.S330S 0.34 TCGA-FW-A3R5-06 14 97009108 97009108 C T PAPOLA Intron 0.23 TCGA-FW-A3R5-06 14 99640764 99640764 C T BCL11B Silent p.K803K 0.17 TCGA-FW-A3R5-06 14 99640962 99640962 G A BCL11B Silent p.F737F 0.48 TCGA-FW-A3R5-06 14 99724046 99724046 C T BCL11B Missense_Mutation p.M63I 0.33 deleterious(0.02) benign(0.001) TCGA-FW-A3R5-06 15 100214787 100214787 C T MEF2A Missense_Mutation p.P196S 0.07 tolerated(0.09) probably_damaging(0.986) TCGA-FW-A3R5-06 15 100332550 100332550 G A AC090825.1 RNA 0.09 TCGA-FW-A3R5-06 15 100332551 100332551 G A AC090825.1 RNA 0.10 TCGA-FW-A3R5-06 15 100332827 100332827 G A AC090825.1 3'Flank 0.11 TCGA-FW-A3R5-06 15 100514540 100514540 G A ADAMTS17 3'UTR 0.19 TCGA-FW-A3R5-06 15 100996191 100996191 G A CERS3 Silent p.I302I 0.17 TCGA-FW-A3R5-06 15 101013182 101013182 G A CERS3 Missense_Mutation p.R229C 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 101031041 101031041 G A CERS3 Missense_Mutation p.S90F 0.17 tolerated(0.23) possibly_damaging(0.882) TCGA-FW-A3R5-06 15 101434167 101434167 C T ALDH1A3 Silent p.F182F 0.14 TCGA-FW-A3R5-06 15 101436147 101436147 C T ALDH1A3 Missense_Mutation p.P226S 0.23 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 15 101523896 101523896 C T LRRK1 Missense_Mutation p.S142F 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 15 101529561 101529561 C T LRRK1 Silent p.F240F 0.15 TCGA-FW-A3R5-06 15 101565044 101565044 G A LRRK1 Missense_Mutation p.G702R 0.15 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 15 101566311 101566311 G A LRRK1 Missense_Mutation p.G792S 0.15 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 15 101592065 101592065 G A LRRK1 Missense_Mutation p.A1197T 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 15 101606018 101606018 G A LRRK1 Silent p.L1792L 0.14 TCGA-FW-A3R5-06 15 101718571 101718571 G A CHSY1 Silent p.F477F 0.53 TCGA-FW-A3R5-06 15 101865215 101865215 C T PCSK6 Silent p.G738G 0.53 TCGA-FW-A3R5-06 15 101865230 101865230 G A PCSK6 Silent p.P733P 0.11 TCGA-FW-A3R5-06 15 101887979 101887979 T A PCSK6 Intron 0.26 TCGA-FW-A3R5-06 15 101906464 101906464 C T PCSK6 Missense_Mutation p.E598K 0.49 tolerated(0.38) benign(0.009) TCGA-FW-A3R5-06 15 101971537 101971537 C T PCSK6 Silent p.L214L 0.21 TCGA-FW-A3R5-06 15 102241367 102241367 G A TARSL2 Silent p.F414F 0.49 TCGA-FW-A3R5-06 15 102346532 102346532 G A OR4F6 Missense_Mutation p.G204R 0.19 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-FW-A3R5-06 15 102358521 102358521 C T OR4F15 Silent p.V44V 0.06 TCGA-FW-A3R5-06 15 102358832 102358832 C T OR4F15 Missense_Mutation p.S148F 0.24 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-FW-A3R5-06 15 20170165 20170165 G A IGHV1OR15-9 Missense_Mutation p.S36L 0.35 deleterious(0.03) possibly_damaging(0.719) TCGA-FW-A3R5-06 15 20170315 20170315 C T IGHV1OR15-9 Missense_Mutation p.A14T 0.23 tolerated(0.33) benign(0.121) TCGA-FW-A3R5-06 15 20488791 20488791 C T CHEK2P2 RNA 0.16 TCGA-FW-A3R5-06 15 20488815 20488815 C T CHEK2P2 RNA 0.11 TCGA-FW-A3R5-06 15 20490535 20490535 G A CHEK2P2 RNA 0.12 TCGA-FW-A3R5-06 15 20495414 20495414 G A CHEK2P2 RNA 0.17 TCGA-FW-A3R5-06 15 20588480 20588480 G A HERC2P3 RNA 0.21 TCGA-FW-A3R5-06 15 20588639 20588639 C T HERC2P3 RNA 0.27 TCGA-FW-A3R5-06 15 20636398 20636398 G A HERC2P3 RNA 0.60 TCGA-FW-A3R5-06 15 20642674 20642674 C T HERC2P3 RNA 0.20 TCGA-FW-A3R5-06 15 20644229 20644229 G A HERC2P3 RNA 0.19 TCGA-FW-A3R5-06 15 20649564 20649564 C T HERC2P3 RNA 0.29 TCGA-FW-A3R5-06 15 20651245 20651245 G A HERC2P3 RNA 0.27 TCGA-FW-A3R5-06 15 20662890 20662890 C T HERC2P3 RNA 0.09 TCGA-FW-A3R5-06 15 20663149 20663149 G A HERC2P3 RNA 0.21 TCGA-FW-A3R5-06 15 21071265 21071265 G A POTEB2 Missense_Mutation p.P116S 0.16 tolerated(0.43) possibly_damaging(0.7) TCGA-FW-A3R5-06 15 21071307 21071307 C T POTEB2 Missense_Mutation p.D102N 0.17 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 15 22062320 22062320 G A POTEB Missense_Mutation p.H432Y 0.51 deleterious_low_confidence(0.01) benign(0.031) TCGA-FW-A3R5-06 15 22332734 22332734 G A RP11-69H14.6 RNA 0.19 TCGA-FW-A3R5-06 15 22369068 22369068 C T OR4M2 Nonsense_Mutation p.R165* 0.16 TCGA-FW-A3R5-06 15 22369238 22369238 T G OR4M2 Silent p.L221L 0.32 TCGA-FW-A3R5-06 15 22382613 22382613 C T OR4N4 Silent p.F47F 0.24 TCGA-FW-A3R5-06 15 22382676 22382676 C T OR4N4 Silent p.F68F 0.10 TCGA-FW-A3R5-06 15 22382697 22382697 C T OR4N4 Silent p.F75F 0.19 TCGA-FW-A3R5-06 15 22383057 22383057 G A OR4N4 Silent p.V195V 0.18 TCGA-FW-A3R5-06 15 22383132 22383132 C T OR4N4 Silent p.V220V 0.25 TCGA-FW-A3R5-06 15 22383180 22383180 C T OR4N4 Silent p.A236A 0.27 TCGA-FW-A3R5-06 15 22473014 22473014 C T IGHV4OR15-8 Missense_Mutation p.R86Q 0.10 deleterious(0.03) probably_damaging(0.953) TCGA-FW-A3R5-06 15 22473075 22473075 C T IGHV4OR15-8 Missense_Mutation p.E66K 0.10 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 15 22709155 22709155 C T AC116165.1 5'Flank 0.17 TCGA-FW-A3R5-06 15 22709166 22709166 C T AC116165.1 5'Flank 0.18 TCGA-FW-A3R5-06 15 22846939 22846939 C T TUBGCP5 Missense_Mutation p.R272W 0.20 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 15 22855192 22855192 C T TUBGCP5 Silent p.F551F 0.23 TCGA-FW-A3R5-06 15 22864223 22864223 C T TUBGCP5 Silent p.F727F 0.27 TCGA-FW-A3R5-06 15 22872489 22872489 C T TUBGCP5 Silent p.S1006S 0.18 TCGA-FW-A3R5-06 15 22945069 22945069 C T CYFIP1 Silent p.A380A 0.40 TCGA-FW-A3R5-06 15 23261824 23261824 G A GOLGA8I Silent p.R312R 0.16 TCGA-FW-A3R5-06 15 23262319 23262319 G A GOLGA8I Silent p.K392K 0.22 TCGA-FW-A3R5-06 15 23299694 23299694 G A HERC2P2 RNA 0.15 TCGA-FW-A3R5-06 15 23444016 23444016 G A AC100757.1 5'Flank 0.12 TCGA-FW-A3R5-06 15 23811088 23811088 G A MKRN3 Silent p.R53R 0.20 TCGA-FW-A3R5-06 15 23890849 23890849 G A MAGEL2 Missense_Mutation p.P78S 0.17 deleterious_low_confidence(0) benign(0.01) TCGA-FW-A3R5-06 15 23890862 23890862 C T MAGEL2 Silent p.E73E 0.31 TCGA-FW-A3R5-06 15 23931438 23931438 G A NDN Silent p.P309P 0.30 TCGA-FW-A3R5-06 15 24921209 24921209 C T NPAP1 Silent p.F65F 0.24 TCGA-FW-A3R5-06 15 24921215 24921215 C T NPAP1 Silent p.A67A 0.15 TCGA-FW-A3R5-06 15 24921236 24921236 C T NPAP1 Silent p.L74L 0.26 TCGA-FW-A3R5-06 15 24921362 24921362 C T NPAP1 Silent p.I116I 0.32 TCGA-FW-A3R5-06 15 24921425 24921425 C T NPAP1 Silent p.A137A 0.21 TCGA-FW-A3R5-06 15 24921487 24921487 G A NPAP1 Missense_Mutation p.R158K 0.24 tolerated(0.83) benign(0.122) TCGA-FW-A3R5-06 15 24921522 24921522 G A NPAP1 Missense_Mutation p.E170K 0.32 tolerated(0.38) benign(0.004) TCGA-FW-A3R5-06 15 24921933 24921933 C T NPAP1 Missense_Mutation p.P307S 0.23 tolerated(0.11) benign(0.098) TCGA-FW-A3R5-06 15 24922012 24922012 C T NPAP1 Missense_Mutation p.P333L 0.41 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 24922292 24922292 C T NPAP1 Silent p.I426I 0.25 TCGA-FW-A3R5-06 15 24922361 24922361 A G NPAP1 Silent p.K449K 0.31 TCGA-FW-A3R5-06 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.29 tolerated(0.56) benign(0.041) TCGA-FW-A3R5-06 15 24922679 24922679 C T NPAP1 Silent p.S555S 0.21 TCGA-FW-A3R5-06 15 24922731 24922731 C T NPAP1 Missense_Mutation p.P573S 0.30 tolerated(0.36) benign(0.07) TCGA-FW-A3R5-06 15 24922862 24922862 G A NPAP1 Silent p.K616K 0.34 TCGA-FW-A3R5-06 15 24922879 24922879 C T NPAP1 Missense_Mutation p.S622F 0.33 deleterious(0.01) possibly_damaging(0.862) TCGA-FW-A3R5-06 15 24922993 24922993 C T NPAP1 Missense_Mutation p.S660F 0.12 tolerated(0.71) benign(0.006) TCGA-FW-A3R5-06 15 24923060 24923060 G A NPAP1 Silent p.V682V 0.25 TCGA-FW-A3R5-06 15 24923706 24923706 C T NPAP1 Missense_Mutation p.H898Y 0.25 deleterious(0.03) benign(0.261) TCGA-FW-A3R5-06 15 24923865 24923865 C T NPAP1 Missense_Mutation p.P951S 0.26 tolerated(0.11) possibly_damaging(0.598) TCGA-FW-A3R5-06 15 24924372 24924372 C T NPAP1 Nonsense_Mutation p.Q1120* 0.40 TCGA-FW-A3R5-06 15 25220525 25220525 G A SNRPN Silent p.K8K 0.22 TCGA-FW-A3R5-06 15 25223432 25223432 C T SNRPN Missense_Mutation p.P218S 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 15 25223551 25223551 C T SNRPN Intron 0.27 TCGA-FW-A3R5-06 15 25287187 25287187 C T SNORD109A RNA 0.20 TCGA-FW-A3R5-06 15 25296628 25296628 C T SNORD116-1 RNA 0.30 TCGA-FW-A3R5-06 15 25299361 25299361 C T SNORD116-2 RNA 0.27 TCGA-FW-A3R5-06 15 25304717 25304717 C T SNORD116-3 3'Flank 0.25 TCGA-FW-A3R5-06 15 25307511 25307511 C T SNORD116-5 RNA 0.16 TCGA-FW-A3R5-06 15 25322252 25322252 G A SNORD116-12 RNA 0.19 TCGA-FW-A3R5-06 15 25326342 25326342 C T SNORD116-12 3'Flank 0.41 TCGA-FW-A3R5-06 15 25326366 25326366 C T SNORD116-12 3'Flank 0.30 TCGA-FW-A3R5-06 15 25326463 25326463 C T SNORD116-15 RNA 0.27 TCGA-FW-A3R5-06 15 25336839 25336839 C T SNORD116-23 5'Flank 0.29 TCGA-FW-A3R5-06 15 25349830 25349830 G A SNHG14 RNA 0.17 TCGA-FW-A3R5-06 15 25419959 25419959 G A SNORD115-3 5'Flank 0.30 TCGA-FW-A3R5-06 15 25423794 25423794 C T SNORD115-6 5'Flank 0.54 TCGA-FW-A3R5-06 15 25430789 25430789 G A SNORD115-9 RNA 0.28 TCGA-FW-A3R5-06 15 25440076 25440076 G A SNORD115-14 RNA 0.30 TCGA-FW-A3R5-06 15 25448201 25448201 G A SNORD115-20 5'Flank 0.13 TCGA-FW-A3R5-06 15 25448272 25448272 G A SNORD115-20 5'Flank 0.33 TCGA-FW-A3R5-06 15 25449508 25449508 C T SNORD115-19 RNA 0.18 TCGA-FW-A3R5-06 15 25451449 25451449 G A SNORD115-20 RNA 0.18 TCGA-FW-A3R5-06 15 25458674 25458674 C T SNORD115-22 3'Flank 0.33 TCGA-FW-A3R5-06 15 25463744 25463744 G A SNORD115-27 5'Flank 0.32 TCGA-FW-A3R5-06 15 25463882 25463882 C T SNORD115-28 5'Flank 0.30 TCGA-FW-A3R5-06 15 25467363 25467363 C T SNORD115-27 3'Flank 0.24 TCGA-FW-A3R5-06 15 25479220 25479220 G A SNORD115-33 3'Flank 0.43 TCGA-FW-A3R5-06 15 25479434 25479434 G A SNORD115-35 RNA 0.24 TCGA-FW-A3R5-06 15 25488690 25488690 C T SNORD115-40 5'Flank 0.28 TCGA-FW-A3R5-06 15 25490468 25490468 C T SNORD115-40 3'Flank 0.21 TCGA-FW-A3R5-06 15 25514967 25514967 G A SNORD115-48 RNA 0.29 TCGA-FW-A3R5-06 15 25585324 25585324 G A UBE3A Silent p.F805F 0.19 TCGA-FW-A3R5-06 15 25585356 25585356 G A UBE3A Missense_Mutation p.H795Y 0.26 deleterious(0) benign(0.374) TCGA-FW-A3R5-06 15 25652328 25652328 G A UBE3A Intron 0.36 TCGA-FW-A3R5-06 15 25652329 25652329 A T UBE3A Intron 0.33 TCGA-FW-A3R5-06 15 25959211 25959211 G A ATP10A Missense_Mutation p.L652F 0.23 tolerated(0.66) benign(0.014) TCGA-FW-A3R5-06 15 25961910 25961910 G A ATP10A Silent p.V581V 0.08 TCGA-FW-A3R5-06 15 26825473 26825473 G A GABRB3 Silent p.F225F 0.32 TCGA-FW-A3R5-06 15 26825586 26825586 C T GABRB3 Missense_Mutation p.D188N 0.24 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 15 26866495 26866495 G A GABRB3 Missense_Mutation p.L143F 0.23 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 15 27128577 27128577 C T GABRA5 Missense_Mutation p.L124F 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 27184586 27184586 C T GABRA5 Intron 0.61 TCGA-FW-A3R5-06 15 27571983 27571983 C T GABRG3 Nonsense_Mutation p.Q100* 0.33 TCGA-FW-A3R5-06 15 28116381 28116381 G A OCA2 Silent p.L721L 0.26 TCGA-FW-A3R5-06 15 28362215 28362215 G A HERC2 Missense_Mutation p.S4453L 0.11 benign(0.013) TCGA-FW-A3R5-06 15 28436193 28436193 G A HERC2 Missense_Mutation p.S2856F 0.19 probably_damaging(0.912) TCGA-FW-A3R5-06 15 28441679 28441679 A T HERC2 Missense_Mutation p.F2683Y 0.14 probably_damaging(0.96) TCGA-FW-A3R5-06 15 28465784 28465784 G A HERC2 Missense_Mutation p.P1887S 0.28 possibly_damaging(0.87) TCGA-FW-A3R5-06 15 28467325 28467325 G A HERC2 Missense_Mutation p.A1834V 0.21 benign(0.002) TCGA-FW-A3R5-06 15 28474625 28474625 G A HERC2 Missense_Mutation p.P1701S 0.29 benign(0.006) TCGA-FW-A3R5-06 15 28478684 28478684 G A HERC2 Missense_Mutation p.H1459Y 0.23 benign(0.139) TCGA-FW-A3R5-06 15 28478849 28478849 G A HERC2 Missense_Mutation p.R1438C 0.29 possibly_damaging(0.899) TCGA-FW-A3R5-06 15 28501425 28501425 G A HERC2 Silent p.F852F 0.36 TCGA-FW-A3R5-06 15 28519449 28519449 G A HERC2 Missense_Mutation p.S263F 0.34 benign(0) TCGA-FW-A3R5-06 15 28600112 28600112 C T RP11-483E23.2 RNA 0.11 TCGA-FW-A3R5-06 15 29346369 29346369 G C APBA2 Missense_Mutation p.E94D 0.15 tolerated_low_confidence(0.42) benign(0.047) TCGA-FW-A3R5-06 15 29390737 29390737 C T APBA2 Silent p.F432F 0.24 TCGA-FW-A3R5-06 15 29409410 29409410 C T APBA2 3'UTR 0.45 TCGA-FW-A3R5-06 15 30024717 30024717 G A TJP1 Missense_Mutation p.P646L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 30024934 30024934 G A TJP1 Missense_Mutation p.R608C 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 15 30026560 30026560 G A TJP1 Silent p.I478I 0.27 TCGA-FW-A3R5-06 15 31206141 31206141 C T FAN1 Missense_Mutation p.S553L 0.16 deleterious(0) possibly_damaging(0.755) TCGA-FW-A3R5-06 15 31294508 31294508 G A TRPM1 Silent p.S1482S 0.35 TCGA-FW-A3R5-06 15 31294509 31294509 G A TRPM1 Missense_Mutation p.S1482F 0.34 deleterious_low_confidence(0) benign(0.282) TCGA-FW-A3R5-06 15 31323334 31323334 G A TRPM1 Silent p.V1010V 0.30 TCGA-FW-A3R5-06 15 31355448 31355448 G A TRPM1 Missense_Mutation p.P297S 0.27 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 15 32404046 32404046 C T CHRNA7 Missense_Mutation p.T128I 0.27 deleterious(0.01) benign(0.145) TCGA-FW-A3R5-06 15 33023078 33023078 G A GREM1 Missense_Mutation p.G63R 0.19 tolerated(0.49) benign(0.006) TCGA-FW-A3R5-06 15 33840369 33840369 C T RYR3 Missense_Mutation p.A260V 0.13 probably_damaging(0.975) TCGA-FW-A3R5-06 15 33840370 33840370 C T RYR3 Silent p.A260A 0.13 TCGA-FW-A3R5-06 15 33840377 33840377 C T RYR3 Missense_Mutation p.L263F 0.37 probably_damaging(0.994) TCGA-FW-A3R5-06 15 33855038 33855038 G A RYR3 Missense_Mutation p.E325K 0.26 benign(0.001) TCGA-FW-A3R5-06 15 33855092 33855092 G - RYR3 Frame_Shift_Del p.V343Ffs*16 0.33 TCGA-FW-A3R5-06 15 33873829 33873829 C T RYR3 Missense_Mutation p.L520F 0.22 benign(0.199) TCGA-FW-A3R5-06 15 33895342 33895342 C T RYR3 Silent p.F647F 0.16 TCGA-FW-A3R5-06 15 33895456 33895456 C T RYR3 Silent p.A685A 0.24 TCGA-FW-A3R5-06 15 33916036 33916036 G A RYR3 Missense_Mutation p.G796R 0.10 probably_damaging(1) TCGA-FW-A3R5-06 15 33920725 33920725 C T RYR3 Silent p.I876I 0.19 TCGA-FW-A3R5-06 15 33941323 33941323 C T RYR3 Silent p.V1343V 0.27 TCGA-FW-A3R5-06 15 33954784 33954784 G A RYR3 Missense_Mutation p.E1685K 0.28 benign(0.102) TCGA-FW-A3R5-06 15 33991943 33991943 C T RYR3 Silent p.F2096F 0.18 TCGA-FW-A3R5-06 15 34014926 34014926 G A RYR3 Silent p.V2210V 0.28 TCGA-FW-A3R5-06 15 34018600 34018600 G A RYR3 Missense_Mutation p.G2309E 0.13 probably_damaging(0.995) TCGA-FW-A3R5-06 15 34030707 34030707 G A RYR3 Nonsense_Mutation p.W2524* 0.32 TCGA-FW-A3R5-06 15 34040696 34040696 G A RYR3 Missense_Mutation p.D2722N 0.36 possibly_damaging(0.805) TCGA-FW-A3R5-06 15 34064165 34064165 G A RYR3 Missense_Mutation p.R2954Q 0.24 benign(0.155) TCGA-FW-A3R5-06 15 34064204 34064204 C T RYR3 Missense_Mutation p.T2967I 0.14 possibly_damaging(0.792) TCGA-FW-A3R5-06 15 34077940 34077940 G A RYR3 Missense_Mutation p.D3116N 0.26 benign(0.002) TCGA-FW-A3R5-06 15 34078170 34078170 G A RYR3 Missense_Mutation p.M3192I 0.26 probably_damaging(0.993) TCGA-FW-A3R5-06 15 34109088 34109088 C T RYR3 Missense_Mutation p.H3510Y 0.28 benign(0.053) TCGA-FW-A3R5-06 15 34111984 34111984 C T RYR3 Silent p.T3578T 0.29 TCGA-FW-A3R5-06 15 34129178 34129178 C T RYR3 Silent p.S3880S 0.43 TCGA-FW-A3R5-06 15 34129929 34129929 C T RYR3 Silent p.F3916F 0.36 TCGA-FW-A3R5-06 15 34159851 34159851 G A AVEN Missense_Mutation p.S273F 0.37 tolerated(0.05) benign(0.055) TCGA-FW-A3R5-06 15 34160047 34160047 G A AVEN Missense_Mutation p.P208S 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 34356343 34356343 C T CHRM5 Silent p.T475T 0.30 TCGA-FW-A3R5-06 15 34356394 34356394 C T CHRM5 Silent p.P492P 0.24 TCGA-FW-A3R5-06 15 34549924 34549924 G A SLC12A6 Silent p.I203I 0.21 TCGA-FW-A3R5-06 15 34634120 34634120 G A NOP10 3'UTR 0.29 TCGA-FW-A3R5-06 15 34638112 34638112 C T NUTM1 5'UTR 0.30 TCGA-FW-A3R5-06 15 34640205 34640205 C T NUTM1 Missense_Mutation p.P18S 0.16 tolerated(0.1) benign(0.393) TCGA-FW-A3R5-06 15 34640283 34640283 G A NUTM1 Missense_Mutation p.E44K 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-FW-A3R5-06 15 34640458 34640458 C T NUTM1 Missense_Mutation p.S102F 0.37 tolerated(0.75) benign(0.071) TCGA-FW-A3R5-06 15 34640665 34640665 C T NUTM1 Missense_Mutation p.P171L 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-FW-A3R5-06 15 34646010 34646010 C T NUTM1 Missense_Mutation p.P310S 0.30 deleterious(0.04) possibly_damaging(0.661) TCGA-FW-A3R5-06 15 34656261 34656261 G A LPCAT4 Missense_Mutation p.P202L 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 35083487 35083487 G A ACTC1 Missense_Mutation p.S273F 0.20 tolerated_low_confidence(0.1) probably_damaging(0.937) TCGA-FW-A3R5-06 15 35084718 35084718 C T ACTC1 Silent p.E169E 0.11 TCGA-FW-A3R5-06 15 35529621 35529621 G A ANP32AP1 RNA 0.30 TCGA-FW-A3R5-06 15 35742927 35742927 G A DPH6 Missense_Mutation p.S155L 0.27 tolerated(0.12) benign(0.003) TCGA-FW-A3R5-06 15 37109956 37109956 C T CSNK1A1P1 RNA 0.24 TCGA-FW-A3R5-06 15 38230404 38230404 C T TMCO5A Missense_Mutation p.P121S 0.44 tolerated(0.3) benign(0.009) TCGA-FW-A3R5-06 15 38234401 38234401 G A TMCO5A Missense_Mutation p.E172K 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 15 38591722 38591722 C T SPRED1 Missense_Mutation p.R61C 0.29 tolerated(0.09) benign(0.029) TCGA-FW-A3R5-06 15 38803830 38803830 G A RASGRP1 Missense_Mutation p.S314L 0.10 deleterious(0.02) possibly_damaging(0.625) TCGA-FW-A3R5-06 15 38990420 38990420 G A C15orf53 Missense_Mutation p.D72N 0.33 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 15 38990427 38990427 C T C15orf53 Missense_Mutation p.S74F 0.28 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FW-A3R5-06 15 38990708 38990708 C T C15orf53 Missense_Mutation p.P168S 0.48 tolerated_low_confidence(0.38) benign(0.017) TCGA-FW-A3R5-06 15 39544521 39544521 C T C15orf54 Missense_Mutation p.P62L 0.27 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-FW-A3R5-06 15 39544722 39544722 G A C15orf54 Nonsense_Mutation p.W129* 0.25 TCGA-FW-A3R5-06 15 39879646 39879646 G A THBS1 Missense_Mutation p.D407N 0.30 tolerated(0.08) probably_damaging(0.969) TCGA-FW-A3R5-06 15 39879654 39879654 C T THBS1 Silent p.L409L 0.20 TCGA-FW-A3R5-06 15 39880361 39880361 G A THBS1 Silent p.G471G 0.09 TCGA-FW-A3R5-06 15 39880407 39880407 G C THBS1 Missense_Mutation p.D487H 0.33 tolerated(0.11) possibly_damaging(0.607) TCGA-FW-A3R5-06 15 39884771 39884771 G A THBS1 Silent p.L845L 0.26 TCGA-FW-A3R5-06 15 39884993 39884993 G A THBS1 Silent p.K919K 0.16 TCGA-FW-A3R5-06 15 39885298 39885298 C T THBS1 Silent p.T955T 0.22 TCGA-FW-A3R5-06 15 39885739 39885739 C T THBS1 Missense_Mutation p.S1046F 0.28 deleterious(0) possibly_damaging(0.647) TCGA-FW-A3R5-06 15 39910311 39910311 G A FSIP1 Missense_Mutation p.P442S 0.32 tolerated(0.19) benign(0.195) TCGA-FW-A3R5-06 15 40034005 40034005 C T FSIP1 Splice_Site p.X219_splice 0.29 TCGA-FW-A3R5-06 15 40068723 40068723 C T FSIP1 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 15 40099395 40099395 G A GPR176 Silent p.F79F 0.30 TCGA-FW-A3R5-06 15 40254023 40254023 C T EIF2AK4 Missense_Mutation p.S261F 0.30 deleterious(0) possibly_damaging(0.805) TCGA-FW-A3R5-06 15 40300277 40300277 C T EIF2AK4 Missense_Mutation p.P1153S 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 40301883 40301883 C T EIF2AK4 Silent p.I1215I 0.34 TCGA-FW-A3R5-06 15 40313113 40313113 C T EIF2AK4 Missense_Mutation p.S1396F 0.25 tolerated(0.69) benign(0.125) TCGA-FW-A3R5-06 15 40328545 40328545 C T SRP14 Missense_Mutation p.A134T 0.22 unknown(0) TCGA-FW-A3R5-06 15 40398107 40398107 G A BMF Nonsense_Mutation p.R61* 0.29 TCGA-FW-A3R5-06 15 40494791 40494791 C T BUB1B Missense_Mutation p.P544S 0.17 tolerated(0.44) benign(0.002) TCGA-FW-A3R5-06 15 40564524 40564524 C T PAK6 Missense_Mutation p.P320S 0.33 tolerated(0.11) benign(0.009) TCGA-FW-A3R5-06 15 40566414 40566414 C T PAK6 Silent p.S605S 0.29 TCGA-FW-A3R5-06 15 40568406 40568406 G A PAK6 3'UTR 0.13 TCGA-FW-A3R5-06 15 40585181 40585181 C T PLCB2 Missense_Mutation p.E758K 0.22 deleterious(0) possibly_damaging(0.852) TCGA-FW-A3R5-06 15 40594355 40594355 C T PLCB2 Missense_Mutation p.G163E 0.07 deleterious(0.04) benign(0.381) TCGA-FW-A3R5-06 15 40599853 40599853 G A PLCB2 Silent p.V7V 0.16 TCGA-FW-A3R5-06 15 40655966 40655966 C T DISP2 Missense_Mutation p.P87L 0.20 deleterious_low_confidence(0.01) benign(0.283) TCGA-FW-A3R5-06 15 40685440 40685440 C T KNSTRN Intron 0.32 TCGA-FW-A3R5-06 15 40754416 40754416 C T BAHD1 Missense_Mutation p.P580S 0.30 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-FW-A3R5-06 15 40764056 40764056 C T CHST14 Missense_Mutation p.P215L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 40866204 40866204 C T RPUSD2 Missense_Mutation p.A461V 0.24 tolerated(0.24) benign(0.006) TCGA-FW-A3R5-06 15 40913356 40913356 C T CASC5 Silent p.S324S 0.23 TCGA-FW-A3R5-06 15 40916996 40916996 C T CASC5 Nonsense_Mutation p.Q1538* 0.33 TCGA-FW-A3R5-06 15 40944253 40944253 C T CASC5 Missense_Mutation p.T2148I 0.16 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 15 41108451 41108451 C T PPP1R14D Silent p.G124G 0.11 TCGA-FW-A3R5-06 15 41145444 41145444 G A SPINT1 Missense_Mutation p.V200I 0.24 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 15 41148164 41148164 G A SPINT1 Missense_Mutation p.E414K 0.61 tolerated(0.07) possibly_damaging(0.743) TCGA-FW-A3R5-06 15 41149210 41149210 C T SPINT1 3'UTR 0.26 TCGA-FW-A3R5-06 15 41165381 41165381 C T RHOV Missense_Mutation p.E196K 0.32 deleterious(0.02) possibly_damaging(0.832) TCGA-FW-A3R5-06 15 41276491 41276491 G A INO80 Silent p.I1327I 0.25 TCGA-FW-A3R5-06 15 41476198 41476198 G A EXD1 Silent p.S492S 0.28 TCGA-FW-A3R5-06 15 41476499 41476499 G A EXD1 Missense_Mutation p.P392L 0.08 tolerated(0.75) benign(0.003) TCGA-FW-A3R5-06 15 41476767 41476767 C T EXD1 Missense_Mutation p.E303K 0.30 deleterious(0.01) probably_damaging(0.927) TCGA-FW-A3R5-06 15 41482155 41482155 C T EXD1 Missense_Mutation p.D288N 0.27 tolerated(0.08) benign(0.111) TCGA-FW-A3R5-06 15 41643234 41643234 C T NUSAP1 Missense_Mutation p.H119Y 0.32 tolerated(0.07) benign(0.002) TCGA-FW-A3R5-06 15 41679779 41679779 C T NDUFAF1 Missense_Mutation p.G283R 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 41769408 41769408 C T RTF1 Nonsense_Mutation p.Q536* 0.20 TCGA-FW-A3R5-06 15 41796986 41796986 G A LTK Missense_Mutation p.S702F 0.27 tolerated_low_confidence(0.05) probably_damaging(0.926) TCGA-FW-A3R5-06 15 41797425 41797425 C T LTK Missense_Mutation p.E636K 0.61 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FW-A3R5-06 15 41797462 41797462 C T LTK Silent p.L623L 0.31 TCGA-FW-A3R5-06 15 41804342 41804342 C T LTK Missense_Mutation p.G161R 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 15 41819639 41819639 G A RPAP1 Silent p.A531A 0.21 TCGA-FW-A3R5-06 15 41853402 41853402 G A TYRO3 Missense_Mutation p.G68R 0.10 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 15 42028729 42028729 C T MGA Missense_Mutation p.P1423S 0.28 tolerated(0.37) benign(0.082) TCGA-FW-A3R5-06 15 42059249 42059249 C T MGA Missense_Mutation p.A2990V 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 42113041 42113041 C T MAPKBP1 Silent p.S837S 0.28 TCGA-FW-A3R5-06 15 42113243 42113243 C T MAPKBP1 Missense_Mutation p.L905F 0.15 tolerated(0.32) benign(0.006) TCGA-FW-A3R5-06 15 42116018 42116018 C T MAPKBP1 Silent p.F1330F 0.34 TCGA-FW-A3R5-06 15 42127077 42127077 C T JMJD7-PLA2G4B Silent p.S68S 0.25 TCGA-FW-A3R5-06 15 42127274 42127274 C T JMJD7-PLA2G4B Silent p.L109L 0.32 TCGA-FW-A3R5-06 15 42154381 42154381 G A SPTBN5 Missense_Mutation p.P2499S 0.25 probably_damaging(1) TCGA-FW-A3R5-06 15 42173354 42173354 G A SPTBN5 Missense_Mutation p.P846S 0.37 possibly_damaging(0.876) TCGA-FW-A3R5-06 15 42279563 42279563 C T PLA2G4E Silent p.P614P 0.27 TCGA-FW-A3R5-06 15 42285037 42285037 G A PLA2G4E Silent p.L456L 0.37 TCGA-FW-A3R5-06 15 42297140 42297140 C T PLA2G4E Missense_Mutation p.E188K 0.14 tolerated(0.55) benign(0.011) TCGA-FW-A3R5-06 15 42298192 42298192 G A PLA2G4E Missense_Mutation p.P174L 0.19 deleterious(0.03) benign(0.011) TCGA-FW-A3R5-06 15 42375933 42375933 C T PLA2G4D Silent p.G172G 0.34 TCGA-FW-A3R5-06 15 42375973 42375973 C T PLA2G4D Missense_Mutation p.R159Q 0.31 deleterious(0.01) possibly_damaging(0.867) TCGA-FW-A3R5-06 15 42379582 42379582 C T PLA2G4D Missense_Mutation p.M57I 0.27 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 15 42379884 42379884 G A PLA2G4D Silent p.T20T 0.22 TCGA-FW-A3R5-06 15 42434764 42434764 G A PLA2G4F Missense_Mutation p.P764L 0.26 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 15 42437980 42437980 C T PLA2G4F Silent p.R552R 0.12 TCGA-FW-A3R5-06 15 42439523 42439523 C T PLA2G4F Silent p.R406R 0.31 TCGA-FW-A3R5-06 15 42458405 42458405 G A VPS39 Silent p.F544F 0.26 TCGA-FW-A3R5-06 15 42458807 42458807 G A VPS39 Silent p.S520S 0.29 TCGA-FW-A3R5-06 15 42459061 42459061 G A VPS39 Silent p.C476C 0.30 TCGA-FW-A3R5-06 15 42651939 42651939 C T CAPN3 5'UTR 0.33 TCGA-FW-A3R5-06 15 42678454 42678454 G A CAPN3 Missense_Mutation p.E157K 0.29 tolerated(0.4) benign(0.014) TCGA-FW-A3R5-06 15 42837368 42837368 C T LRRC57 Silent p.Q195Q 0.30 TCGA-FW-A3R5-06 15 43026533 43026533 T C CDAN1 Missense_Mutation p.N383S 0.24 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 15 43038186 43038186 G A TTBK2 Missense_Mutation p.S1181L 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 15 43045247 43045247 G A TTBK2 Nonsense_Mutation p.Q733* 0.08 TCGA-FW-A3R5-06 15 43067772 43067772 G A TTBK2 Missense_Mutation p.S520F 0.27 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 15 43075811 43075811 G A TTBK2 Missense_Mutation p.P335S 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 15 43086883 43086883 G A TTBK2 Silent p.T313T 0.06 TCGA-FW-A3R5-06 15 43120225 43120225 G A TTBK2 Silent p.N146N 0.13 TCGA-FW-A3R5-06 15 43299342 43299342 G A UBR1 Missense_Mutation p.S1117L 0.24 deleterious(0) benign(0.098) TCGA-FW-A3R5-06 15 43351929 43351929 G A UBR1 Missense_Mutation p.S319F 0.12 deleterious(0.01) possibly_damaging(0.453) TCGA-FW-A3R5-06 15 43495431 43495431 C T EPB42 Missense_Mutation p.R584Q 0.23 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 15 43500853 43500853 C T EPB42 Missense_Mutation p.G348D 0.08 tolerated(0.92) benign(0.044) TCGA-FW-A3R5-06 15 43501528 43501528 C T EPB42 Missense_Mutation p.R289Q 0.09 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 15 43503703 43503703 G A EPB42 Nonsense_Mutation p.Q184* 0.23 TCGA-FW-A3R5-06 15 43507295 43507295 C T EPB42 Missense_Mutation p.R173K 0.21 tolerated(0.27) benign(0.007) TCGA-FW-A3R5-06 15 43507420 43507420 G A EPB42 Silent p.S131S 0.28 TCGA-FW-A3R5-06 15 43508587 43508587 G A EPB42 Silent p.A55A 0.08 TCGA-FW-A3R5-06 15 43531170 43531170 G A TGM5 Missense_Mutation p.S397L 0.19 deleterious(0) benign(0.439) TCGA-FW-A3R5-06 15 43552311 43552311 C T TGM5 Silent p.Q125Q 0.40 TCGA-FW-A3R5-06 15 43552318 43552318 G A TGM5 Missense_Mutation p.S123F 0.16 deleterious(0) possibly_damaging(0.882) TCGA-FW-A3R5-06 15 43552380 43552380 C T TGM5 Silent p.V102V 0.27 TCGA-FW-A3R5-06 15 43569108 43569108 G C TGM7 Missense_Mutation p.T642R 0.32 deleterious(0) possibly_damaging(0.814) TCGA-FW-A3R5-06 15 43579608 43579608 C T TGM7 Silent p.E245E 0.24 TCGA-FW-A3R5-06 15 43585109 43585109 G A TGM7 Silent p.F79F 0.22 TCGA-FW-A3R5-06 15 43641199 43641199 C T ADAL Missense_Mutation p.S216F 0.35 tolerated(0.05) benign(0.049) TCGA-FW-A3R5-06 15 43668391 43668391 C T TUBGCP4 Silent p.F58F 0.32 TCGA-FW-A3R5-06 15 43670062 43670062 C T TUBGCP4 Silent p.P134P 0.22 TCGA-FW-A3R5-06 15 43749275 43749275 G A TP53BP1 Silent p.L511L 0.27 TCGA-FW-A3R5-06 15 43813609 43813609 G A MAP1A 5'UTR 0.16 TCGA-FW-A3R5-06 15 43813610 43813610 G A MAP1A 5'UTR 0.16 TCGA-FW-A3R5-06 15 43814059 43814059 C T MAP1A Missense_Mutation p.P130S 0.31 probably_damaging(0.998) TCGA-FW-A3R5-06 15 43814503 43814503 G A MAP1A Missense_Mutation p.E278K 0.17 probably_damaging(0.993) TCGA-FW-A3R5-06 15 43815292 43815292 G A MAP1A Missense_Mutation p.E541K 0.21 possibly_damaging(0.742) TCGA-FW-A3R5-06 15 43815940 43815940 G A MAP1A Missense_Mutation p.D757N 0.26 possibly_damaging(0.864) TCGA-FW-A3R5-06 15 43816702 43816702 C T MAP1A Missense_Mutation p.H1011Y 0.30 probably_damaging(0.997) TCGA-FW-A3R5-06 15 43819304 43819304 G A MAP1A Nonsense_Mutation p.W1878* 0.26 TCGA-FW-A3R5-06 15 43819408 43819408 G A MAP1A Missense_Mutation p.E1913K 0.22 probably_damaging(0.997) TCGA-FW-A3R5-06 15 43819490 43819490 G A MAP1A Missense_Mutation p.S1940N 0.32 probably_damaging(0.997) TCGA-FW-A3R5-06 15 43821264 43821264 C T MAP1A Silent p.L2531L 0.32 TCGA-FW-A3R5-06 15 43821548 43821548 G A MAP1A Missense_Mutation p.G2626E 0.31 probably_damaging(1) TCGA-FW-A3R5-06 15 43827047 43827047 G A PPIP5K1 Missense_Mutation p.P1376L 0.35 deleterious_low_confidence(0.01) benign(0.002) TCGA-FW-A3R5-06 15 43893150 43893150 G A STRC Silent p.F1588F 0.27 TCGA-FW-A3R5-06 15 43893672 43893672 C T STRC Silent p.R1541R 0.30 TCGA-FW-A3R5-06 15 43893738 43893738 G A STRC Silent p.P1519P 0.27 TCGA-FW-A3R5-06 15 43900332 43900332 G A STRC Silent p.F1209F 0.23 TCGA-FW-A3R5-06 15 43928263 43928263 G A CATSPER2 Nonsense_Mutation p.R333* 0.17 TCGA-FW-A3R5-06 15 43988505 43988505 G A CKMT1A Missense_Mutation p.E274K 0.26 deleterious(0) possibly_damaging(0.768) TCGA-FW-A3R5-06 15 43990917 43990917 G A CKMT1A Missense_Mutation p.G364S 0.35 deleterious(0.01) possibly_damaging(0.579) TCGA-FW-A3R5-06 15 44028550 44028550 G A RNU6-354P 5'Flank 0.28 TCGA-FW-A3R5-06 15 45050878 45050878 C T TRIM69 Silent p.F213F 0.26 TCGA-FW-A3R5-06 15 45248981 45248981 G A C15orf43 Splice_Site p.X22_splice 0.27 TCGA-FW-A3R5-06 15 45249110 45249110 G A C15orf43 Silent p.T27T 0.11 TCGA-FW-A3R5-06 15 45387220 45387220 C T DUOX2 Missense_Mutation p.E1437K 0.32 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 45387767 45387767 C T DUOX2 Silent p.E1369E 0.28 TCGA-FW-A3R5-06 15 45388060 45388060 G A DUOX2 Missense_Mutation p.S1349F 0.12 deleterious(0.03) benign(0.098) TCGA-FW-A3R5-06 15 45391578 45391578 G A DUOX2 Intron 0.30 TCGA-FW-A3R5-06 15 45392370 45392370 C T DUOX2 Missense_Mutation p.R1021Q 0.16 deleterious(0.03) possibly_damaging(0.572) TCGA-FW-A3R5-06 15 45396248 45396248 G A DUOX2 Missense_Mutation p.S855F 0.27 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 15 45399639 45399639 C T DUOX2 Missense_Mutation p.E533K 0.29 tolerated(0.75) benign(0.05) TCGA-FW-A3R5-06 15 45411507 45411507 G A DUOXA1 Missense_Mutation p.H277Y 0.20 deleterious(0) probably_damaging(0.916) TCGA-FW-A3R5-06 15 45430210 45430210 G A DUOX1 Missense_Mutation p.E371K 0.18 tolerated(0.17) benign(0.003) TCGA-FW-A3R5-06 15 45444226 45444226 G A DUOX1 Missense_Mutation p.G1057R 0.22 deleterious(0) possibly_damaging(0.695) TCGA-FW-A3R5-06 15 45491118 45491118 G A SHF Missense_Mutation p.P52L 0.27 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 15 45656180 45656180 G A GATM Silent p.S359S 0.33 TCGA-FW-A3R5-06 15 45669010 45669010 C T GATM Missense_Mutation p.R26Q 0.22 tolerated_low_confidence(0.24) benign(0.008) TCGA-FW-A3R5-06 15 45695524 45695524 C T SPATA5L1 Silent p.L299L 0.28 TCGA-FW-A3R5-06 15 45724270 45724270 C T C15orf48 Silent p.I41I 0.21 TCGA-FW-A3R5-06 15 45968358 45968358 G A SQRDL Silent p.G238G 0.33 TCGA-FW-A3R5-06 15 48055274 48055274 C T SEMA6D Silent p.I240I 0.10 TCGA-FW-A3R5-06 15 48431226 48431226 C A SLC24A5 Missense_Mutation p.S311Y 0.28 tolerated(0.2) benign(0.017) TCGA-FW-A3R5-06 15 48624484 48624484 C T DUT Silent p.P100P 0.18 TCGA-FW-A3R5-06 15 48704860 48704860 G A FBN1 Missense_Mutation p.S2711F 0.28 probably_damaging(0.997) TCGA-FW-A3R5-06 15 48719832 48719832 G A FBN1 Missense_Mutation p.P2379L 0.09 probably_damaging(1) TCGA-FW-A3R5-06 15 48729211 48729211 G A FBN1 Missense_Mutation p.S2148F 0.26 probably_damaging(0.995) TCGA-FW-A3R5-06 15 48729266 48729266 C T FBN1 Missense_Mutation p.E2130K 0.25 probably_damaging(0.979) TCGA-FW-A3R5-06 15 48736816 48736816 C T FBN1 Missense_Mutation p.G1987S 0.20 probably_damaging(0.938) TCGA-FW-A3R5-06 15 48736830 48736830 C T FBN1 Missense_Mutation p.R1982K 0.30 benign(0.003) TCGA-FW-A3R5-06 15 48741088 48741088 G A FBN1 Missense_Mutation p.R1850C 0.32 probably_damaging(0.984) TCGA-FW-A3R5-06 15 48762861 48762861 C T FBN1 Missense_Mutation p.E1477K 0.32 probably_damaging(0.998) TCGA-FW-A3R5-06 15 48764779 48764779 G A FBN1 Silent p.F1435F 0.33 TCGA-FW-A3R5-06 15 48796017 48796017 C T FBN1 Missense_Mutation p.E694K 0.27 probably_damaging(0.998) TCGA-FW-A3R5-06 15 48797262 48797262 G A FBN1 Silent p.F640F 0.28 TCGA-FW-A3R5-06 15 48802271 48802271 G A FBN1 Missense_Mutation p.H562Y 0.27 benign(0.004) TCGA-FW-A3R5-06 15 48813009 48813009 G A FBN1 Missense_Mutation p.R332C 0.31 benign(0.028) TCGA-FW-A3R5-06 15 49031038 49031038 G A CEP152 Missense_Mutation p.P1514L 0.28 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 15 49033695 49033695 T A CEP152 Intron 0.36 TCGA-FW-A3R5-06 15 49160046 49160046 G A SHC4 Silent p.A305A 0.14 TCGA-FW-A3R5-06 15 49431756 49431756 G A COPS2 Missense_Mutation p.S114F 0.27 deleterious(0) benign(0.291) TCGA-FW-A3R5-06 15 49716709 49716709 G A FGF7 Missense_Mutation p.R72Q 0.30 tolerated(0.29) possibly_damaging(0.805) TCGA-FW-A3R5-06 15 50158630 50158630 C T ATP8B4 Missense_Mutation p.G1027R 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 50223468 50223468 C T ATP8B4 Missense_Mutation p.G497E 0.20 tolerated(0.28) probably_damaging(0.981) TCGA-FW-A3R5-06 15 50264894 50264894 C T ATP8B4 Silent p.T376T 0.27 TCGA-FW-A3R5-06 15 50279643 50279643 C T ATP8B4 Silent p.L231L 0.23 TCGA-FW-A3R5-06 15 50528136 50528136 G A SLC27A2 Missense_Mutation p.G569E 0.10 tolerated(0.12) benign(0.244) TCGA-FW-A3R5-06 15 50534694 50534694 G A HDC Silent p.S584S 0.24 TCGA-FW-A3R5-06 15 50534736 50534736 G A HDC Silent p.F570F 0.25 TCGA-FW-A3R5-06 15 50534962 50534962 C T HDC Missense_Mutation p.R495K 0.28 tolerated_low_confidence(0.49) benign(0.001) TCGA-FW-A3R5-06 15 50546780 50546780 C T HDC Missense_Mutation p.D175N 0.32 tolerated(0.25) benign(0.02) TCGA-FW-A3R5-06 15 50557805 50557805 C T HDC Missense_Mutation p.E6K 0.33 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 15 50785001 50785001 C T USP8 Missense_Mutation p.R780C 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 15 50833302 50833302 C T USP50 Missense_Mutation p.E202K 0.29 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 15 50884459 50884459 G A TRPM7 Missense_Mutation p.P1325S 0.31 tolerated_low_confidence(0.81) benign(0.001) TCGA-FW-A3R5-06 15 51289566 51289566 C T AP4E1 Missense_Mutation p.S797L 0.41 deleterious(0.03) benign(0.19) TCGA-FW-A3R5-06 15 51294740 51294740 C T AP4E1 Missense_Mutation p.P1099S 0.28 tolerated(0.09) possibly_damaging(0.687) TCGA-FW-A3R5-06 15 51349974 51349974 G A TNFAIP8L3 3'UTR 0.36 TCGA-FW-A3R5-06 15 51350174 51350174 G A TNFAIP8L3 Silent p.F261F 0.29 TCGA-FW-A3R5-06 15 51350254 51350254 C T TNFAIP8L3 Missense_Mutation p.E235K 0.32 tolerated(0.18) benign(0.281) TCGA-FW-A3R5-06 15 51350363 51350363 C T TNFAIP8L3 Silent p.K198K 0.10 TCGA-FW-A3R5-06 15 51350414 51350414 C T TNFAIP8L3 Silent p.R181R 0.30 TCGA-FW-A3R5-06 15 51397441 51397441 C T TNFAIP8L3 5'UTR 0.33 TCGA-FW-A3R5-06 15 51503250 51503250 G A CYP19A1 Missense_Mutation p.P423S 0.23 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 15 51507373 51507373 G A CYP19A1 Silent p.I305I 0.20 TCGA-FW-A3R5-06 15 51687149 51687149 G A GLDN Missense_Mutation p.G220E 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-FW-A3R5-06 15 51696586 51696586 G A GLDN Missense_Mutation p.E431K 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 51758498 51758498 G A DMXL2 Missense_Mutation p.P2468L 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 51758499 51758499 G A DMXL2 Missense_Mutation p.P2468S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 15 51792266 51792266 G A DMXL2 Missense_Mutation p.P1052L 0.23 deleterious(0.01) benign(0.373) TCGA-FW-A3R5-06 15 51795149 51795149 G A DMXL2 Missense_Mutation p.S949F 0.15 deleterious(0.04) possibly_damaging(0.674) TCGA-FW-A3R5-06 15 51839476 51839476 G A DMXL2 Nonsense_Mutation p.R233* 0.25 TCGA-FW-A3R5-06 15 51974720 51974720 C T SCG3 Missense_Mutation p.S30F 0.29 deleterious_low_confidence(0.01) benign(0.277) TCGA-FW-A3R5-06 15 51975321 51975321 G A SCG3 Missense_Mutation p.E61K 0.33 tolerated_low_confidence(0.11) benign(0.383) TCGA-FW-A3R5-06 15 51975425 51975425 C T SCG3 Missense_Mutation p.P64L 0.28 tolerated_low_confidence(0.05) benign(0.068) TCGA-FW-A3R5-06 15 51984482 51984482 G A SCG3 Missense_Mutation p.E273K 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-FW-A3R5-06 15 51993386 51993386 G A SCG3 Silent p.K384K 0.29 TCGA-FW-A3R5-06 15 52100691 52100691 C T TMOD2 3'UTR 0.34 TCGA-FW-A3R5-06 15 52338584 52338584 C T MAPK6 5'UTR 0.27 TCGA-FW-A3R5-06 15 52356461 52356461 C T MAPK6 Missense_Mutation p.S477F 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 15 52404827 52404827 C T BCL2L10 Missense_Mutation p.E33K 0.38 deleterious(0.03) possibly_damaging(0.67) TCGA-FW-A3R5-06 15 52414814 52414814 G A GNB5 3'UTR 0.41 TCGA-FW-A3R5-06 15 52498066 52498066 C T MYO5C Missense_Mutation p.R1495Q 0.21 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 15 52539740 52539740 G A MYO5C Missense_Mutation p.P599L 0.27 tolerated(0.07) benign(0.007) TCGA-FW-A3R5-06 15 52556489 52556489 G A MYO5C Silent p.F315F 0.26 TCGA-FW-A3R5-06 15 52571156 52571156 G A MYO5C Silent p.I121I 0.33 TCGA-FW-A3R5-06 15 52708472 52708472 A G MYO5A Missense_Mutation p.V161A 0.28 deleterious(0) possibly_damaging(0.796) TCGA-FW-A3R5-06 15 52897398 52897398 G A FAM214A Missense_Mutation p.H798Y 0.27 tolerated(0.06) benign(0.016) TCGA-FW-A3R5-06 15 53809900 53809900 G A WDR72 Missense_Mutation p.S1102F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 15 53907746 53907746 C T WDR72 Missense_Mutation p.R886K 0.17 tolerated(0.63) benign(0.003) TCGA-FW-A3R5-06 15 53907760 53907760 C T WDR72 Silent p.Q881Q 0.24 TCGA-FW-A3R5-06 15 53908220 53908220 C T WDR72 Missense_Mutation p.R728K 0.25 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 15 53992099 53992099 G A WDR72 Missense_Mutation p.S538F 0.09 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 15 53997401 53997401 G A WDR72 Nonsense_Mutation p.Q378* 0.23 TCGA-FW-A3R5-06 15 54015097 54015097 C T WDR72 Silent p.A54A 0.10 TCGA-FW-A3R5-06 15 54025254 54025254 C T WDR72 Silent p.T31T 0.28 TCGA-FW-A3R5-06 15 54305292 54305292 G A UNC13C Silent p.K64K 0.18 TCGA-FW-A3R5-06 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.28 deleterious_low_confidence(0) benign(0.44) TCGA-FW-A3R5-06 15 54305718 54305718 C T UNC13C Silent p.S206S 0.25 TCGA-FW-A3R5-06 15 54306010 54306010 G A UNC13C Missense_Mutation p.D304N 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 54306412 54306412 G A UNC13C Missense_Mutation p.E438K 0.35 deleterious_low_confidence(0) benign(0.427) TCGA-FW-A3R5-06 15 54306867 54306867 G A UNC13C Silent p.R589R 0.31 TCGA-FW-A3R5-06 15 54306918 54306918 G A UNC13C Silent p.L606L 0.13 TCGA-FW-A3R5-06 15 54307109 54307109 C T UNC13C Missense_Mutation p.S670L 0.31 deleterious_low_confidence(0) benign(0.001) TCGA-FW-A3R5-06 15 54307795 54307795 G A UNC13C Missense_Mutation p.D899N 0.24 deleterious_low_confidence(0.04) benign(0.002) TCGA-FW-A3R5-06 15 54308037 54308037 C T UNC13C Silent p.A979A 0.25 TCGA-FW-A3R5-06 15 54435228 54435228 G A UNC13C Silent p.V999V 0.21 TCGA-FW-A3R5-06 15 54556509 54556509 G A UNC13C Missense_Mutation p.E1198K 0.35 tolerated_low_confidence(0.31) benign(0.21) TCGA-FW-A3R5-06 15 54586243 54586243 G A UNC13C Missense_Mutation p.M1323I 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.813) TCGA-FW-A3R5-06 15 54792345 54792345 G A UNC13C Missense_Mutation p.G1710E 0.19 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-FW-A3R5-06 15 54817803 54817803 C T UNC13C Silent p.V1838V 0.13 TCGA-FW-A3R5-06 15 54841886 54841886 G A UNC13C Silent p.L1958L 0.33 TCGA-FW-A3R5-06 15 54914569 54914569 G A UNC13C Missense_Mutation p.D2051N 0.33 tolerated_low_confidence(0.11) benign(0.012) TCGA-FW-A3R5-06 15 54919034 54919034 G A UNC13C Missense_Mutation p.G2123E 0.20 deleterious_low_confidence(0) possibly_damaging(0.538) TCGA-FW-A3R5-06 15 55727241 55727241 C T DYX1C1 Silent p.T303T 0.20 TCGA-FW-A3R5-06 15 55838477 55838477 G A PYGO1 Missense_Mutation p.S335L 0.32 tolerated(0.15) benign(0.004) TCGA-FW-A3R5-06 15 55838615 55838615 G A PYGO1 Missense_Mutation p.S289L 0.16 tolerated(0.05) benign(0.194) TCGA-FW-A3R5-06 15 55839150 55839150 G A PYGO1 Missense_Mutation p.P111S 0.10 tolerated(0.75) possibly_damaging(0.598) TCGA-FW-A3R5-06 15 55839201 55839201 C T PYGO1 Missense_Mutation p.G94S 0.19 tolerated(0.42) benign(0.382) TCGA-FW-A3R5-06 15 55839341 55839341 G A PYGO1 Missense_Mutation p.P47L 0.15 deleterious(0) benign(0.086) TCGA-FW-A3R5-06 15 55912417 55912417 G A PRTG Silent p.T1082T 0.26 TCGA-FW-A3R5-06 15 56207630 56207630 G A NEDD4 Missense_Mutation p.S467F 0.26 deleterious_low_confidence(0.04) benign(0.444) TCGA-FW-A3R5-06 15 56385698 56385698 G A RFX7 Missense_Mutation p.R1410C 0.23 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 15 56388240 56388240 G A RFX7 Silent p.P562P 0.26 TCGA-FW-A3R5-06 15 56390337 56390337 G A RFX7 Missense_Mutation p.S350L 0.32 deleterious(0) benign(0.007) TCGA-FW-A3R5-06 15 56726525 56726525 C T MNS1 Silent p.L360L 0.23 TCGA-FW-A3R5-06 15 56961140 56961140 G A ZNF280D Missense_Mutation p.R476C 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 15 57523364 57523364 C T TCF12 Silent p.S198S 0.27 TCGA-FW-A3R5-06 15 57730213 57730213 G A CGNL1 Missense_Mutation p.G6S 0.33 deleterious_low_confidence(0.02) benign(0.066) TCGA-FW-A3R5-06 15 57730674 57730674 G A CGNL1 Silent p.K159K 0.16 TCGA-FW-A3R5-06 15 57731603 57731603 A T CGNL1 Missense_Mutation p.K469I 0.25 tolerated(0.05) benign(0.429) TCGA-FW-A3R5-06 15 57745893 57745893 G A CGNL1 Silent p.V689V 0.39 TCGA-FW-A3R5-06 15 57745930 57745930 G A CGNL1 Missense_Mutation p.D702N 0.18 deleterious(0.01) possibly_damaging(0.831) TCGA-FW-A3R5-06 15 57745960 57745960 G A CGNL1 Missense_Mutation p.D712N 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 57754021 57754021 G A CGNL1 Missense_Mutation p.M778I 0.27 tolerated(0.27) benign(0.013) TCGA-FW-A3R5-06 15 57809130 57809130 C T CGNL1 Silent p.I852I 0.16 TCGA-FW-A3R5-06 15 57815731 57815731 G A CGNL1 Silent p.E920E 0.33 TCGA-FW-A3R5-06 15 57839758 57839758 G A CGNL1 3'UTR 0.32 TCGA-FW-A3R5-06 15 57910260 57910260 C T MYZAP Silent p.T64T 0.20 TCGA-FW-A3R5-06 15 57918040 57918040 C T GCOM1 Missense_Mutation p.R159C 0.35 deleterious(0) possibly_damaging(0.498) TCGA-FW-A3R5-06 15 57924639 57924639 C T GCOM1 Missense_Mutation p.S229L 0.27 deleterious(0) benign(0.355) TCGA-FW-A3R5-06 15 57929968 57929968 G A GCOM1 Missense_Mutation p.E337K 0.27 tolerated(0.64) benign(0.008) TCGA-FW-A3R5-06 15 57931689 57931689 C T GCOM1 Silent p.H355H 0.14 TCGA-FW-A3R5-06 15 57931719 57931719 G A GCOM1 Silent p.K365K 0.20 TCGA-FW-A3R5-06 15 57967220 57967220 G A GCOM1 Missense_Mutation p.E420K 0.10 tolerated(0.11) benign(0.197) TCGA-FW-A3R5-06 15 58247295 58247295 G A ALDH1A2 3'UTR 0.26 TCGA-FW-A3R5-06 15 58247330 58247330 G A ALDH1A2 3'UTR 0.26 TCGA-FW-A3R5-06 15 58247352 58247352 G A ALDH1A2 3'UTR 0.28 TCGA-FW-A3R5-06 15 58285269 58285269 C T ALDH1A2 Nonsense_Mutation p.W186* 0.22 TCGA-FW-A3R5-06 15 58302915 58302915 C T ALDH1A2 Missense_Mutation p.G142D 0.29 tolerated(0.21) probably_damaging(0.982) TCGA-FW-A3R5-06 15 58302916 58302916 C T ALDH1A2 Missense_Mutation p.G142S 0.30 tolerated(0.41) probably_damaging(0.92) TCGA-FW-A3R5-06 15 58306080 58306080 C T ALDH1A2 Silent p.V113V 0.27 TCGA-FW-A3R5-06 15 58430764 58430764 G A AQP9 5'UTR 0.26 TCGA-FW-A3R5-06 15 58430866 58430866 C T AQP9 Silent p.F34F 0.11 TCGA-FW-A3R5-06 15 59182605 59182605 G A SLTM Missense_Mutation p.R652C 0.32 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 59323895 59323895 C T RNF111 Missense_Mutation p.P292S 0.27 deleterious(0.01) possibly_damaging(0.641) TCGA-FW-A3R5-06 15 59373179 59373179 C T RNF111 Missense_Mutation p.P665S 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-FW-A3R5-06 15 59373296 59373296 C T RNF111 Missense_Mutation p.P704S 0.11 tolerated_low_confidence(0.47) probably_damaging(0.999) TCGA-FW-A3R5-06 15 59799517 59799517 G A FAM81A Silent p.T173T 0.18 TCGA-FW-A3R5-06 15 59910953 59910953 C T GCNT3 Silent p.F172F 0.18 TCGA-FW-A3R5-06 15 59911343 59911343 C T GCNT3 Silent p.S302S 0.29 TCGA-FW-A3R5-06 15 62239438 62239438 G A VPS13C Silent p.V1610V 0.24 TCGA-FW-A3R5-06 15 62359880 62359880 C T C2CD4A Missense_Mutation p.P23L 0.47 tolerated(0.53) benign(0.002) TCGA-FW-A3R5-06 15 62539564 62539564 C T AC126323.1 5'Flank 0.30 TCGA-FW-A3R5-06 15 62539576 62539576 C T AC126323.1 5'Flank 0.43 TCGA-FW-A3R5-06 15 63011984 63011984 C T TLN2 Missense_Mutation p.P966S 0.61 tolerated(0.06) possibly_damaging(0.566) TCGA-FW-A3R5-06 15 63019376 63019376 G A TLN2 Missense_Mutation p.E1116K 0.12 tolerated(0.08) benign(0.126) TCGA-FW-A3R5-06 15 63047835 63047835 C T TLN2 Silent p.F1527F 0.16 TCGA-FW-A3R5-06 15 63125570 63125570 C T TLN2 Intron 0.47 TCGA-FW-A3R5-06 15 63354877 63354877 C T TPM1 Intron 0.13 TCGA-FW-A3R5-06 15 63955210 63955210 G A HERC1 Silent p.I2958I 0.11 TCGA-FW-A3R5-06 15 63966615 63966615 C T HERC1 Missense_Mutation p.R2591Q 0.14 probably_damaging(0.996) TCGA-FW-A3R5-06 15 64263654 64263654 G A DAPK2 Missense_Mutation p.H141Y 0.06 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 64275848 64275848 C T DAPK2 Silent p.V66V 0.15 TCGA-FW-A3R5-06 15 64275924 64275924 C T DAPK2 Missense_Mutation p.R41Q 0.12 tolerated(0.25) benign(0.191) TCGA-FW-A3R5-06 15 64429925 64429925 C T SNX1 Intron 0.26 TCGA-FW-A3R5-06 15 64448887 64448887 G A SNX22 3'UTR 0.21 TCGA-FW-A3R5-06 15 64592699 64592699 G A CSNK1G1 5'UTR 0.09 TCGA-FW-A3R5-06 15 64967823 64967823 C G ZNF609 Missense_Mutation p.L924V 0.07 tolerated(0.48) benign(0.01) TCGA-FW-A3R5-06 15 65042566 65042566 G A RBPMS2 Silent p.S60S 0.25 TCGA-FW-A3R5-06 15 65108826 65108826 G A PIF1 Missense_Mutation p.P605S 0.21 tolerated(0.06) benign(0.034) TCGA-FW-A3R5-06 15 65108835 65108835 G A PIF1 Missense_Mutation p.R602C 0.16 deleterious(0.05) benign(0.025) TCGA-FW-A3R5-06 15 65157266 65157266 C T PLEKHO2 Missense_Mutation p.P218S 0.10 tolerated(0.82) benign(0.005) TCGA-FW-A3R5-06 15 65157267 65157267 C T PLEKHO2 Missense_Mutation p.P218L 0.10 tolerated(0.69) benign(0) TCGA-FW-A3R5-06 15 65209693 65209693 C T ANKDD1A Missense_Mutation p.L83F 0.25 tolerated(0.07) benign(0.309) TCGA-FW-A3R5-06 15 65347440 65347440 C T RASL12 Missense_Mutation p.E200K 0.38 deleterious(0.02) possibly_damaging(0.859) TCGA-FW-A3R5-06 15 65370117 65370117 G A KBTBD13 Missense_Mutation p.E322K 0.40 deleterious(0.04) probably_damaging(0.945) TCGA-FW-A3R5-06 15 65370431 65370431 G A KBTBD13 Silent p.E426E 0.23 TCGA-FW-A3R5-06 15 65410940 65410940 G A PDCD7 3'UTR 0.18 TCGA-FW-A3R5-06 15 65411101 65411101 G A PDCD7 Missense_Mutation p.P471L 0.21 tolerated(0.31) benign(0.011) TCGA-FW-A3R5-06 15 65489537 65489537 G A CILP Silent p.P1029P 0.16 TCGA-FW-A3R5-06 15 65489842 65489842 G A CILP Missense_Mutation p.P928S 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 15 65490231 65490231 C T CILP Missense_Mutation p.S798N 0.10 tolerated(0.05) probably_damaging(0.985) TCGA-FW-A3R5-06 15 65499330 65499330 C T CILP Missense_Mutation p.E72K 0.49 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 65500011 65500011 C T CILP Silent p.E51E 0.49 TCGA-FW-A3R5-06 15 65502113 65502113 G A CILP 5'UTR 0.28 TCGA-FW-A3R5-06 15 65502172 65502172 C T CILP 5'UTR 0.24 TCGA-FW-A3R5-06 15 65559098 65559098 C T PARP16 Silent p.K107K 0.14 TCGA-FW-A3R5-06 15 65621371 65621371 G A IGDCC3 Missense_Mutation p.A774V 0.52 tolerated_low_confidence(0.16) benign(0.01) TCGA-FW-A3R5-06 15 65621418 65621418 G A IGDCC3 Silent p.G758G 0.80 TCGA-FW-A3R5-06 15 65621788 65621788 C T IGDCC3 Silent p.K715K 0.41 TCGA-FW-A3R5-06 15 65623883 65623883 C T IGDCC3 Silent p.E421E 0.26 TCGA-FW-A3R5-06 15 65623988 65623988 G A IGDCC3 Silent p.T386T 0.33 TCGA-FW-A3R5-06 15 65627693 65627693 G A IGDCC3 Silent p.F207F 0.49 TCGA-FW-A3R5-06 15 65676400 65676400 G A IGDCC4 Missense_Mutation p.P1234S 0.23 tolerated_low_confidence(0.1) benign(0.009) TCGA-FW-A3R5-06 15 65678963 65678963 G A IGDCC4 Silent p.I959I 0.49 TCGA-FW-A3R5-06 15 65684548 65684548 G A IGDCC4 Silent p.G682G 0.21 TCGA-FW-A3R5-06 15 65968957 65968957 G A DENND4A Missense_Mutation p.R1398C 0.21 deleterious(0) possibly_damaging(0.677) TCGA-FW-A3R5-06 15 66048628 66048628 G A DENND4A Missense_Mutation p.S54F 0.17 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 15 66223165 66223165 C T MEGF11 Silent p.K468K 0.41 TCGA-FW-A3R5-06 15 66416266 66416266 G A MEGF11 Silent p.I57I 0.14 TCGA-FW-A3R5-06 15 66795835 66795835 G A RPL4 Silent p.S12S 0.19 TCGA-FW-A3R5-06 15 66795836 66795836 G A RPL4 Missense_Mutation p.S12F 0.19 deleterious(0) possibly_damaging(0.835) TCGA-FW-A3R5-06 15 67073660 67073660 C T SMAD6 Silent p.V426V 0.18 TCGA-FW-A3R5-06 15 67073803 67073803 C T SMAD6 Missense_Mutation p.P474L 0.15 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 67555523 67555523 G A IQCH Missense_Mutation p.E80K 0.20 tolerated(0.95) benign(0.004) TCGA-FW-A3R5-06 15 67629324 67629324 G A IQCH Silent p.S133S 0.36 TCGA-FW-A3R5-06 15 67664986 67664986 C T IQCH Missense_Mutation p.R431C 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-FW-A3R5-06 15 67713779 67713779 C T IQCH Missense_Mutation p.P790L 0.18 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 15 67995676 67995676 C T MAP2K5 Missense_Mutation p.P325L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 68099143 68099143 C T MAP2K5 3'UTR 0.16 TCGA-FW-A3R5-06 15 68445979 68445979 C T PIAS1 Missense_Mutation p.L294F 0.43 deleterious(0.04) probably_damaging(0.994) TCGA-FW-A3R5-06 15 68606139 68606139 C T ITGA11 Missense_Mutation p.E954K 0.16 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 15 68617472 68617472 G A ITGA11 Silent p.V773V 0.41 TCGA-FW-A3R5-06 15 68631940 68631940 C T ITGA11 Missense_Mutation p.G392R 0.44 deleterious(0) benign(0.416) TCGA-FW-A3R5-06 15 68641181 68641181 G A ITGA11 Missense_Mutation p.S373L 0.25 deleterious(0.03) possibly_damaging(0.631) TCGA-FW-A3R5-06 15 68643118 68643118 G A ITGA11 Silent p.V299V 0.41 TCGA-FW-A3R5-06 15 68649559 68649559 C T ITGA11 Missense_Mutation p.E227K 0.46 tolerated(0.46) benign(0.113) TCGA-FW-A3R5-06 15 68650889 68650889 C T ITGA11 Silent p.L169L 0.43 TCGA-FW-A3R5-06 15 68661616 68661616 G A ITGA11 Silent p.V57V 0.19 TCGA-FW-A3R5-06 15 68695364 68695364 G A ITGA11 Silent p.F19F 0.15 TCGA-FW-A3R5-06 15 69011137 69011137 C T CORO2B Silent p.I356I 0.18 TCGA-FW-A3R5-06 15 69011140 69011140 G T CORO2B Silent p.V357V 0.22 TCGA-FW-A3R5-06 15 69018352 69018352 C T CORO2B 3'UTR 0.24 TCGA-FW-A3R5-06 15 69320593 69320593 C T NOX5 Silent p.S71S 0.14 TCGA-FW-A3R5-06 15 69320749 69320749 G A NOX5 Intron 0.19 TCGA-FW-A3R5-06 15 69320750 69320750 G A NOX5 Intron 0.19 TCGA-FW-A3R5-06 15 69324005 69324005 C T NOX5 Missense_Mutation p.A158V 0.21 deleterious(0) possibly_damaging(0.58) TCGA-FW-A3R5-06 15 69329379 69329379 G A NOX5 Nonsense_Mutation p.W400* 0.41 TCGA-FW-A3R5-06 15 69329483 69329483 C T NOX5 Missense_Mutation p.A435V 0.26 tolerated(0.76) benign(0.002) TCGA-FW-A3R5-06 15 69329484 69329484 C T NOX5 Silent p.A435A 0.26 TCGA-FW-A3R5-06 15 69335027 69335027 C T NOX5 Missense_Mutation p.S510F 0.13 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 15 69348988 69348988 G A NOX5 Silent p.K750K 0.46 TCGA-FW-A3R5-06 15 69689814 69689814 G A PAQR5 Missense_Mutation p.E174K 0.43 tolerated(0.07) possibly_damaging(0.592) TCGA-FW-A3R5-06 15 71124303 71124303 G A LARP6 3'UTR 0.10 TCGA-FW-A3R5-06 15 71125403 71125403 G A LARP6 Missense_Mutation p.S155L 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 15 71125438 71125438 C T LARP6 Silent p.R143R 0.23 TCGA-FW-A3R5-06 15 71128715 71128715 C T LARP6 Silent p.E110E 0.44 TCGA-FW-A3R5-06 15 71144021 71144021 G A LARP6 Intron 0.37 TCGA-FW-A3R5-06 15 71174729 71174729 G A THAP10 3'UTR 0.19 TCGA-FW-A3R5-06 15 71256160 71256160 C T LRRC49 Silent p.S275S 0.13 TCGA-FW-A3R5-06 15 71329576 71329576 G A LRRC49 Missense_Mutation p.E593K 0.22 tolerated(0.07) probably_damaging(0.987) TCGA-FW-A3R5-06 15 71535177 71535177 C T THSD4 Silent p.V218V 0.28 TCGA-FW-A3R5-06 15 71535217 71535217 C T THSD4 Missense_Mutation p.R232C 0.19 tolerated(0.08) benign(0.28) TCGA-FW-A3R5-06 15 72020966 72020966 G A THSD4 Missense_Mutation p.G479E 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 72023549 72023549 G A THSD4 Silent p.R541R 0.20 TCGA-FW-A3R5-06 15 72039235 72039235 C T THSD4 Missense_Mutation p.R699C 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 72040764 72040764 C T THSD4 Missense_Mutation p.S749L 0.16 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 15 72050250 72050250 G A THSD4 Missense_Mutation p.E809K 0.22 deleterious(0) benign(0.097) TCGA-FW-A3R5-06 15 72104690 72104690 G A NR2E3 RNA 0.25 TCGA-FW-A3R5-06 15 72105971 72105971 A G CTD-2524L6.3 5'Flank 0.15 TCGA-FW-A3R5-06 15 72146759 72146759 G A MYO9A Missense_Mutation p.S2102L 0.24 deleterious(0.04) benign(0.034) TCGA-FW-A3R5-06 15 72286851 72286851 G A MYO9A Missense_Mutation p.H516Y 0.29 deleterious(0) possibly_damaging(0.573) TCGA-FW-A3R5-06 15 72324887 72324887 G A MYO9A Missense_Mutation p.R295C 0.12 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 15 72432043 72432043 C T SENP8 Missense_Mutation p.L27F 0.24 deleterious(0.05) possibly_damaging(0.867) TCGA-FW-A3R5-06 15 72432138 72432138 C T SENP8 Silent p.V58V 0.41 TCGA-FW-A3R5-06 15 72432292 72432292 C T SENP8 Nonsense_Mutation p.Q110* 0.18 TCGA-FW-A3R5-06 15 72458995 72458995 C T GRAMD2 Missense_Mutation p.R174K 0.11 tolerated(0.37) probably_damaging(0.997) TCGA-FW-A3R5-06 15 72462204 72462204 C T GRAMD2 Missense_Mutation p.E40K 0.51 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 15 72491969 72491969 G A PKM 3'UTR 0.23 TCGA-FW-A3R5-06 15 72492920 72492920 G A PKM Nonsense_Mutation p.Q462* 0.08 TCGA-FW-A3R5-06 15 72509755 72509755 G A PKM Missense_Mutation p.H81Y 0.31 tolerated(0.48) benign(0.053) TCGA-FW-A3R5-06 15 72548855 72548855 G A PARP6 Missense_Mutation p.P359L 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 15 72581617 72581617 G A CELF6 Missense_Mutation p.P298S 0.33 tolerated(0.1) benign(0) TCGA-FW-A3R5-06 15 72638913 72638913 G A HEXA Missense_Mutation p.P429S 0.40 tolerated(0.32) possibly_damaging(0.451) TCGA-FW-A3R5-06 15 72638914 72638914 G A HEXA Silent p.G428G 0.40 TCGA-FW-A3R5-06 15 72640430 72640430 G A HEXA Silent p.F344F 0.20 TCGA-FW-A3R5-06 15 72698948 72698948 C T TMEM202 Missense_Mutation p.L115F 0.12 tolerated(0.06) probably_damaging(0.956) TCGA-FW-A3R5-06 15 72958208 72958208 G A GOLGA6B Silent p.Q594Q 0.13 TCGA-FW-A3R5-06 15 72958220 72958220 G A GOLGA6B Silent p.E598E 0.08 TCGA-FW-A3R5-06 15 72968724 72968724 C T HIGD2B 5'UTR 0.19 TCGA-FW-A3R5-06 15 73615104 73615104 C T HCN4 Silent p.G1110G 0.50 TCGA-FW-A3R5-06 15 73615396 73615396 C T HCN4 Missense_Mutation p.G1013E 0.33 tolerated_low_confidence(1) unknown(0) TCGA-FW-A3R5-06 15 73616252 73616252 C T HCN4 Missense_Mutation p.D728N 0.08 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 15 73616427 73616427 C T HCN4 Intron 0.21 TCGA-FW-A3R5-06 15 73617662 73617662 C T HCN4 Missense_Mutation p.E572K 0.21 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 73635884 73635884 G A HCN4 Missense_Mutation p.P351S 0.12 deleterious(0) benign(0.126) TCGA-FW-A3R5-06 15 73635892 73635892 G A HCN4 Missense_Mutation p.S348F 0.26 deleterious(0) possibly_damaging(0.472) TCGA-FW-A3R5-06 15 73636011 73636011 G A HCN4 Silent p.I308I 0.14 TCGA-FW-A3R5-06 15 73659854 73659854 C T HCN4 Nonsense_Mutation p.W253* 0.18 TCGA-FW-A3R5-06 15 73862580 73862580 G A NPTN Missense_Mutation p.P342L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 73996202 73996202 C T CD276 Silent p.A312A 0.24 TCGA-FW-A3R5-06 15 73996519 73996519 C T CD276 Missense_Mutation p.P359S 0.19 tolerated(0.09) benign(0.003) TCGA-FW-A3R5-06 15 74174023 74174023 C T TBC1D21 Silent p.F69F 0.19 TCGA-FW-A3R5-06 15 74177154 74177154 C T TBC1D21 Missense_Mutation p.P134S 0.27 tolerated(0.48) benign(0.174) TCGA-FW-A3R5-06 15 74238812 74238812 C T LOXL1 Silent p.F422F 0.15 TCGA-FW-A3R5-06 15 74276274 74276274 G A STOML1 3'UTR 0.54 TCGA-FW-A3R5-06 15 74281509 74281509 G A STOML1 Silent p.F110F 0.30 TCGA-FW-A3R5-06 15 74363312 74363312 G A GOLGA6A Missense_Mutation p.P674L 0.16 tolerated(0.12) possibly_damaging(0.621) TCGA-FW-A3R5-06 15 74364604 74364604 C T GOLGA6A Silent p.R516R 0.10 TCGA-FW-A3R5-06 15 74367329 74367329 G A GOLGA6A Silent p.S287S 0.20 TCGA-FW-A3R5-06 15 74427408 74427408 G A ISLR2 3'UTR 0.44 TCGA-FW-A3R5-06 15 74467317 74467317 G A ISLR Missense_Mutation p.D40N 0.21 tolerated(0.07) possibly_damaging(0.627) TCGA-FW-A3R5-06 15 74467432 74467432 C T ISLR Missense_Mutation p.S78L 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 74467511 74467511 C T ISLR Silent p.D104D 0.24 TCGA-FW-A3R5-06 15 74467808 74467808 G A ISLR Silent p.P203P 0.21 TCGA-FW-A3R5-06 15 74468459 74468459 C A ISLR Silent p.L420L 0.48 TCGA-FW-A3R5-06 15 74472302 74472302 G A STRA6 3'Flank 0.36 TCGA-FW-A3R5-06 15 74487558 74487558 G A STRA6 Intron 0.38 TCGA-FW-A3R5-06 15 74536339 74536339 C T CCDC33 Missense_Mutation p.P12L 0.12 deleterious(0) benign(0.044) TCGA-FW-A3R5-06 15 74536357 74536357 C T CCDC33 Missense_Mutation p.A18V 0.18 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 15 74536434 74536434 G A CCDC33 Missense_Mutation p.A44T 0.16 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 15 74565190 74565190 G A CCDC33 Missense_Mutation p.M239I 0.18 tolerated(0.1) benign(0.216) TCGA-FW-A3R5-06 15 74622633 74622633 G A CCDC33 Missense_Mutation p.S465N 0.13 tolerated(0.09) probably_damaging(0.916) TCGA-FW-A3R5-06 15 74623563 74623563 G A CCDC33 Missense_Mutation p.R566Q 0.15 tolerated(0.78) benign(0.003) TCGA-FW-A3R5-06 15 74625024 74625024 C T CCDC33 Silent p.F592F 0.22 TCGA-FW-A3R5-06 15 74627479 74627479 G A CCDC33 Intron 0.17 TCGA-FW-A3R5-06 15 74630995 74630995 G A CYP11A1 Missense_Mutation p.R451W 0.46 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 74631996 74631996 G A CYP11A1 Silent p.A363A 0.49 TCGA-FW-A3R5-06 15 74635414 74635414 G A CYP11A1 Silent p.Y298Y 0.49 TCGA-FW-A3R5-06 15 74635433 74635433 C T CYP11A1 Missense_Mutation p.G292E 0.46 tolerated(1) benign(0.027) TCGA-FW-A3R5-06 15 74640336 74640336 G A CYP11A1 Silent p.L110L 0.16 TCGA-FW-A3R5-06 15 74654449 74654449 C T CYP11A1 Intron 0.23 TCGA-FW-A3R5-06 15 74659801 74659801 G A CYP11A1 Silent p.T42T 0.46 TCGA-FW-A3R5-06 15 74740913 74740913 G A UBL7 Missense_Mutation p.S304F 0.20 tolerated(0.09) benign(0.271) TCGA-FW-A3R5-06 15 74883703 74883703 C T ARID3B Missense_Mutation p.L365F 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-FW-A3R5-06 15 74888133 74888133 C T ARID3B 3'UTR 0.17 TCGA-FW-A3R5-06 15 75013558 75013558 G A CYP1A1 Missense_Mutation p.P383L 0.23 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 15 75015177 75015177 C T CYP1A1 Missense_Mutation p.G88S 0.22 deleterious(0.01) possibly_damaging(0.864) TCGA-FW-A3R5-06 15 75042352 75042352 G A CYP1A2 Silent p.L91L 0.13 TCGA-FW-A3R5-06 15 75042757 75042757 C T CYP1A2 Silent p.F226F 0.13 TCGA-FW-A3R5-06 15 75108826 75108826 C T LMAN1L Missense_Mutation p.S130L 0.60 tolerated(0.28) benign(0.059) TCGA-FW-A3R5-06 15 75111616 75111616 G A LMAN1L Intron 0.20 TCGA-FW-A3R5-06 15 75111623 75111623 C T LMAN1L Intron 0.21 TCGA-FW-A3R5-06 15 75112979 75112979 C T LMAN1L Missense_Mutation p.P260S 0.17 tolerated(0.07) benign(0.017) TCGA-FW-A3R5-06 15 75122494 75122494 C T CPLX3 Silent p.I92I 0.21 TCGA-FW-A3R5-06 15 75122542 75122542 G A CPLX3 Missense_Mutation p.M108I 0.18 deleterious(0.04) possibly_damaging(0.754) TCGA-FW-A3R5-06 15 75122545 75122545 C T CPLX3 Silent p.I109I 0.14 TCGA-FW-A3R5-06 15 75311421 75311421 C T SCAMP5 3'UTR 0.31 TCGA-FW-A3R5-06 15 75499524 75499524 C T C15orf39 Missense_Mutation p.P379S 0.43 deleterious(0.05) possibly_damaging(0.803) TCGA-FW-A3R5-06 15 75557688 75557688 G A GOLGA6C Missense_Mutation p.E228K 0.12 deleterious(0.04) benign(0.051) TCGA-FW-A3R5-06 15 75586106 75586106 G A GOLGA6D Missense_Mutation p.G544R 0.23 tolerated(0.16) benign(0.138) TCGA-FW-A3R5-06 15 75586276 75586276 G A GOLGA6D Missense_Mutation p.E573K 0.17 tolerated(0.06) possibly_damaging(0.563) TCGA-FW-A3R5-06 15 75586345 75586345 G A GOLGA6D Missense_Mutation p.E596K 0.24 tolerated(0.7) benign(0.014) TCGA-FW-A3R5-06 15 75595057 75595057 C T DNM1P34 RNA 0.27 TCGA-FW-A3R5-06 15 75651681 75651681 G A MAN2C1 Missense_Mutation p.R683C 0.19 tolerated(0.22) benign(0) TCGA-FW-A3R5-06 15 75761073 75761073 G A PTPN9 3'UTR 0.13 TCGA-FW-A3R5-06 15 75761074 75761074 G T PTPN9 3'UTR 0.13 TCGA-FW-A3R5-06 15 75761170 75761170 G A PTPN9 Silent p.F574F 0.20 TCGA-FW-A3R5-06 15 75949573 75949573 C T SNX33 3'UTR 0.20 TCGA-FW-A3R5-06 15 75949574 75949574 C T SNX33 3'UTR 0.19 TCGA-FW-A3R5-06 15 75968884 75968884 C T CSPG4 Silent p.V1992V 0.11 TCGA-FW-A3R5-06 15 75977862 75977862 G A CSPG4 Missense_Mutation p.R1324C 0.19 deleterious(0.01) possibly_damaging(0.462) TCGA-FW-A3R5-06 15 75983031 75983031 G A CSPG4 Silent p.V125V 0.28 TCGA-FW-A3R5-06 15 76073015 76073015 G A RN7SL319P 5'Flank 0.11 TCGA-FW-A3R5-06 15 76075259 76075259 G A RN7SL319P 5'Flank 0.25 TCGA-FW-A3R5-06 15 76075418 76075418 G A RN7SL319P 5'Flank 0.45 TCGA-FW-A3R5-06 15 76175737 76175737 C T UBE2Q2 Nonsense_Mutation p.R286* 0.25 TCGA-FW-A3R5-06 15 76205550 76205550 C T FBXO22 Missense_Mutation p.R96C 0.15 tolerated(0.1) benign(0.226) TCGA-FW-A3R5-06 15 76254290 76254290 G A NRG4 Missense_Mutation p.R44C 0.48 deleterious(0.02) benign(0.187) TCGA-FW-A3R5-06 15 76426617 76426617 C T C15orf27 Missense_Mutation p.P5S 0.49 tolerated_low_confidence(0.07) benign(0) TCGA-FW-A3R5-06 15 77134191 77134191 G A SCAPER Missense_Mutation p.P93S 0.07 tolerated(0.16) possibly_damaging(0.802) TCGA-FW-A3R5-06 15 77310494 77310494 G A PSTPIP1 Silent p.R14R 0.30 TCGA-FW-A3R5-06 15 77317640 77317640 C T PSTPIP1 Silent p.S76S 0.22 TCGA-FW-A3R5-06 15 77406534 77406534 G A PEAK1 Silent p.S1735S 0.18 TCGA-FW-A3R5-06 15 77406945 77406945 G A PEAK1 Silent p.L1598L 0.27 TCGA-FW-A3R5-06 15 77407037 77407037 G A PEAK1 Missense_Mutation p.P1568S 0.22 tolerated(0.12) probably_damaging(1) TCGA-FW-A3R5-06 15 77407038 77407038 G A PEAK1 Silent p.D1567D 0.22 TCGA-FW-A3R5-06 15 77425644 77425644 G A PEAK1 Silent p.P1260P 0.24 TCGA-FW-A3R5-06 15 77471795 77471795 G A PEAK1 Missense_Mutation p.P825L 0.21 deleterious_low_confidence(0.04) benign(0.001) TCGA-FW-A3R5-06 15 77756657 77756657 C T HMG20A Silent p.L55L 0.25 TCGA-FW-A3R5-06 15 77907015 77907015 C T LINGO1 Missense_Mutation p.D412N 0.11 deleterious(0.03) benign(0.326) TCGA-FW-A3R5-06 15 78212139 78212139 C T RP11-114H24.7 Intron 0.13 TCGA-FW-A3R5-06 15 78316640 78316640 A C TBC1D2B Missense_Mutation p.L443R 0.25 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 15 78393354 78393354 G A SH2D7 Silent p.R253R 0.21 TCGA-FW-A3R5-06 15 78393515 78393515 G A SH2D7 Missense_Mutation p.G307D 0.17 deleterious(0.02) possibly_damaging(0.826) TCGA-FW-A3R5-06 15 78393813 78393813 C T SH2D7 Silent p.I406I 0.20 TCGA-FW-A3R5-06 15 78401619 78401619 C T CIB2 Missense_Mutation p.A102T 0.23 deleterious(0.02) possibly_damaging(0.487) TCGA-FW-A3R5-06 15 78452397 78452397 C T IDH3A Intron 0.24 TCGA-FW-A3R5-06 15 78466040 78466040 C T ACSBG1 Missense_Mutation p.E662K 0.09 deleterious(0.02) benign(0.194) TCGA-FW-A3R5-06 15 78471031 78471031 C T ACSBG1 Missense_Mutation p.E543K 0.11 deleterious(0.01) possibly_damaging(0.472) TCGA-FW-A3R5-06 15 78474955 78474955 C T ACSBG1 Missense_Mutation p.M249I 0.20 deleterious(0.01) probably_damaging(0.934) TCGA-FW-A3R5-06 15 78758726 78758726 G A IREB2 Missense_Mutation p.R175Q 0.42 tolerated(0.6) benign(0.011) TCGA-FW-A3R5-06 15 78778131 78778131 T C IREB2 Missense_Mutation p.V553A 0.50 deleterious(0.01) benign(0.408) TCGA-FW-A3R5-06 15 78888958 78888958 C T CHRNA3 Silent p.R502R 0.23 TCGA-FW-A3R5-06 15 78894012 78894012 G A CHRNA3 Silent p.F324F 0.40 TCGA-FW-A3R5-06 15 78911186 78911186 G A CHRNA3 Missense_Mutation p.P52S 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 78917448 78917448 C T CHRNB4 3'UTR 0.21 TCGA-FW-A3R5-06 15 78921783 78921783 G A CHRNB4 Silent p.T288T 0.22 TCGA-FW-A3R5-06 15 78921784 78921784 G A CHRNB4 Missense_Mutation p.T288I 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 78922032 78922032 G A CHRNB4 Silent p.A205A 0.44 TCGA-FW-A3R5-06 15 78933433 78933433 G A CHRNB4 Missense_Mutation p.L15F 0.28 tolerated(0.18) benign(0.003) TCGA-FW-A3R5-06 15 79051844 79051844 G A ADAMTS7 Silent p.I1660I 0.25 TCGA-FW-A3R5-06 15 79058002 79058002 C T ADAMTS7 Silent p.A1417A 0.28 TCGA-FW-A3R5-06 15 79058091 79058091 C T ADAMTS7 Missense_Mutation p.V1388I 0.08 tolerated(0.42) benign(0.002) TCGA-FW-A3R5-06 15 79058160 79058160 G A ADAMTS7 Missense_Mutation p.P1365S 0.38 tolerated(0.32) benign(0.014) TCGA-FW-A3R5-06 15 79059007 79059007 C T ADAMTS7 Silent p.E1082E 0.11 TCGA-FW-A3R5-06 15 79060533 79060533 G A ADAMTS7 Missense_Mutation p.P863S 0.45 tolerated(0.15) benign(0.142) TCGA-FW-A3R5-06 15 79066542 79066542 G A ADAMTS7 Silent p.A659A 0.25 TCGA-FW-A3R5-06 15 79067090 79067090 G A ADAMTS7 Silent p.F584F 0.16 TCGA-FW-A3R5-06 15 79069905 79069905 C T ADAMTS7 Missense_Mutation p.D450N 0.67 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 15 79092621 79092621 G A ADAMTS7 Silent p.A123A 0.21 TCGA-FW-A3R5-06 15 79092829 79092829 C T ADAMTS7 Missense_Mutation p.G54E 0.30 tolerated(0.52) possibly_damaging(0.665) TCGA-FW-A3R5-06 15 79092842 79092842 G A ADAMTS7 Nonsense_Mutation p.R50* 0.16 TCGA-FW-A3R5-06 15 79254511 79254511 C T RASGRF1 Missense_Mutation p.R1266Q 0.18 tolerated(0.21) benign(0.012) TCGA-FW-A3R5-06 15 79277285 79277285 G A RASGRF1 Intron 0.30 TCGA-FW-A3R5-06 15 79277318 79277318 G A RASGRF1 Intron 0.51 TCGA-FW-A3R5-06 15 79284109 79284109 C T RASGRF1 Missense_Mutation p.E1035K 0.17 deleterious(0.02) possibly_damaging(0.508) TCGA-FW-A3R5-06 15 79290481 79290481 C T RASGRF1 Missense_Mutation p.E991K 0.15 tolerated(0.08) benign(0.026) TCGA-FW-A3R5-06 15 79341864 79341864 C T RASGRF1 Missense_Mutation p.D200N 0.17 deleterious(0.02) benign(0.211) TCGA-FW-A3R5-06 15 79341870 79341870 C T RASGRF1 Missense_Mutation p.D198N 0.17 tolerated(0.09) benign(0.013) TCGA-FW-A3R5-06 15 79382659 79382659 C T RASGRF1 Missense_Mutation p.R61Q 0.48 deleterious(0) possibly_damaging(0.847) TCGA-FW-A3R5-06 15 79748963 79748963 C T KIAA1024 Silent p.C158C 0.22 TCGA-FW-A3R5-06 15 79750470 79750470 C T KIAA1024 Missense_Mutation p.P661S 0.45 deleterious(0.03) benign(0.049) TCGA-FW-A3R5-06 15 79760663 79760663 C T KIAA1024 Silent p.I896I 0.18 TCGA-FW-A3R5-06 15 80460615 80460615 C T FAH Missense_Mutation p.P188L 0.12 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 15 80889619 80889619 C T ARNT2 3'UTR 0.28 TCGA-FW-A3R5-06 15 81172151 81172151 C T KIAA1199 Silent p.A112A 0.10 TCGA-FW-A3R5-06 15 81173324 81173324 G A KIAA1199 Missense_Mutation p.G155E 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 81181868 81181868 G A KIAA1199 Missense_Mutation p.E341K 0.41 deleterious(0.01) possibly_damaging(0.7) TCGA-FW-A3R5-06 15 81201555 81201555 G A KIAA1199 Missense_Mutation p.G569R 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 15 81212437 81212437 C T KIAA1199 Silent p.I600I 0.48 TCGA-FW-A3R5-06 15 81427637 81427637 G A C15orf26 Silent p.K32K 0.14 TCGA-FW-A3R5-06 15 81585035 81585035 C T IL16 Missense_Mutation p.S520F 0.11 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 15 81592522 81592522 C T IL16 Missense_Mutation p.S952F 0.52 deleterious(0.02) benign(0.342) TCGA-FW-A3R5-06 15 81648080 81648080 C T TMC3 Silent p.K307K 0.17 TCGA-FW-A3R5-06 15 81654595 81654595 G A TMC3 Silent p.F120F 0.38 TCGA-FW-A3R5-06 15 81654598 81654598 G A TMC3 Silent p.I119I 0.40 TCGA-FW-A3R5-06 15 81664975 81664975 G A TMC3 Missense_Mutation p.R65C 0.20 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 15 81666408 81666408 G A TMC3 Missense_Mutation p.S4L 0.16 deleterious_low_confidence(0.05) benign(0.011) TCGA-FW-A3R5-06 15 82335978 82335978 G A MEX3B Silent p.F411F 0.27 TCGA-FW-A3R5-06 15 82444475 82444475 G A EFTUD1 Missense_Mutation p.R774C 0.23 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 15 82507161 82507161 G A EFTUD1 Silent p.L549L 0.24 TCGA-FW-A3R5-06 15 82574877 82574877 C T FAM154B Missense_Mutation p.P224L 0.21 tolerated(0.05) benign(0.41) TCGA-FW-A3R5-06 15 83218214 83218214 G A CPEB1 Silent p.P465P 0.23 TCGA-FW-A3R5-06 15 83218215 83218215 G A CPEB1 Missense_Mutation p.P465L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 83221249 83221249 C T CPEB1 Missense_Mutation p.R394Q 0.08 tolerated(0.05) probably_damaging(0.991) TCGA-FW-A3R5-06 15 83224840 83224840 G A CPEB1 Silent p.F213F 0.17 TCGA-FW-A3R5-06 15 83331569 83331569 C T AP3B2 Missense_Mutation p.D885N 0.55 tolerated(0.65) possibly_damaging(0.539) TCGA-FW-A3R5-06 15 83348509 83348509 G A AP3B2 Missense_Mutation p.T385I 0.39 deleterious(0) possibly_damaging(0.658) TCGA-FW-A3R5-06 15 83350314 83350314 G A AP3B2 Missense_Mutation p.R127C 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 83395078 83395078 A G AC105339.2 3'Flank 0.21 TCGA-FW-A3R5-06 15 83437738 83437738 C T FSD2 Missense_Mutation p.E483K 0.18 tolerated(0.26) possibly_damaging(0.824) TCGA-FW-A3R5-06 15 83456104 83456104 C T FSD2 Silent p.R13R 0.49 TCGA-FW-A3R5-06 15 83456109 83456109 C T FSD2 Missense_Mutation p.D12N 0.50 tolerated_low_confidence(0.34) benign(0.015) TCGA-FW-A3R5-06 15 83499448 83499448 C T WHAMM Missense_Mutation p.S580F 0.07 deleterious(0.01) possibly_damaging(0.66) TCGA-FW-A3R5-06 15 83499498 83499498 C T WHAMM Missense_Mutation p.P597S 0.25 tolerated(0.34) benign(0.048) TCGA-FW-A3R5-06 15 83518433 83518433 G A HOMER2 3'UTR 0.25 TCGA-FW-A3R5-06 15 83781639 83781639 C T TM6SF1 Silent p.D61D 0.13 TCGA-FW-A3R5-06 15 83784673 83784673 C T TM6SF1 Silent p.F91F 0.25 TCGA-FW-A3R5-06 15 83793490 83793490 C T TM6SF1 Missense_Mutation p.L224F 0.13 deleterious(0.04) benign(0.167) TCGA-FW-A3R5-06 15 83808025 83808025 G A HDGFRP3 Silent p.T203T 0.09 TCGA-FW-A3R5-06 15 83820065 83820065 C T HDGFRP3 Missense_Mutation p.D170N 0.11 deleterious(0.02) possibly_damaging(0.892) TCGA-FW-A3R5-06 15 83926059 83926059 G A BNC1 3'UTR 0.30 TCGA-FW-A3R5-06 15 83926145 83926145 C T BNC1 3'UTR 0.12 TCGA-FW-A3R5-06 15 83931724 83931724 G A BNC1 Missense_Mutation p.P760L 0.39 deleterious(0) benign(0.255) TCGA-FW-A3R5-06 15 83932393 83932393 G A BNC1 Missense_Mutation p.S537F 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 15 83932503 83932503 C T BNC1 Silent p.E500E 0.31 TCGA-FW-A3R5-06 15 83933329 83933329 C T BNC1 Missense_Mutation p.G225E 0.25 tolerated(1) possibly_damaging(0.572) TCGA-FW-A3R5-06 15 83935804 83935804 G A BNC1 Silent p.I73I 0.22 TCGA-FW-A3R5-06 15 84237342 84237342 C T SH3GL3 Silent p.T83T 0.18 TCGA-FW-A3R5-06 15 84257443 84257443 G A SH3GL3 Missense_Mutation p.R253Q 0.14 tolerated(0.29) benign(0.003) TCGA-FW-A3R5-06 15 84488747 84488747 G A ADAMTSL3 Missense_Mutation p.G183E 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 84527518 84527518 G A ADAMTSL3 Missense_Mutation p.R243K 0.14 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 15 84553916 84553916 C T ADAMTSL3 Nonsense_Mutation p.Q342* 0.20 TCGA-FW-A3R5-06 15 84582010 84582010 G A ADAMTSL3 Missense_Mutation p.E623K 0.25 tolerated(0.68) benign(0.005) TCGA-FW-A3R5-06 15 84592779 84592779 C T ADAMTSL3 Missense_Mutation p.P704L 0.17 deleterious(0.04) benign(0.067) TCGA-FW-A3R5-06 15 84651583 84651583 G A ADAMTSL3 Missense_Mutation p.G1068E 0.22 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 15 84651838 84651838 G T ADAMTSL3 Missense_Mutation p.G1153V 0.23 tolerated(0.1) possibly_damaging(0.461) TCGA-FW-A3R5-06 15 84683354 84683354 C T ADAMTSL3 Missense_Mutation p.S1345F 0.23 tolerated(0.71) benign(0.029) TCGA-FW-A3R5-06 15 84690161 84690161 G A ADAMTSL3 Splice_Site p.X1425_splice 0.06 TCGA-FW-A3R5-06 15 84700164 84700164 C T ADAMTSL3 Silent p.S1578S 0.19 TCGA-FW-A3R5-06 15 85327597 85327597 C T ZNF592 Missense_Mutation p.P564L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 15 85327598 85327598 C T ZNF592 Silent p.P564P 0.22 TCGA-FW-A3R5-06 15 85327800 85327800 C T ZNF592 Silent p.L632L 0.29 TCGA-FW-A3R5-06 15 85327814 85327814 C T ZNF592 Silent p.A636A 0.18 TCGA-FW-A3R5-06 15 85382937 85382937 C T ALPK3 Nonsense_Mutation p.R345* 0.21 TCGA-FW-A3R5-06 15 85399759 85399759 G A ALPK3 Missense_Mutation p.R799K 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.561) TCGA-FW-A3R5-06 15 85399823 85399823 G A ALPK3 Silent p.V820V 0.18 TCGA-FW-A3R5-06 15 85400298 85400298 G A ALPK3 Missense_Mutation p.E979K 0.24 tolerated_low_confidence(0.12) benign(0.015) TCGA-FW-A3R5-06 15 85400660 85400660 C T ALPK3 Silent p.F1099F 0.22 TCGA-FW-A3R5-06 15 85400661 85400661 C T ALPK3 Silent p.L1100L 0.21 TCGA-FW-A3R5-06 15 85401165 85401165 C T ALPK3 Missense_Mutation p.P1268S 0.22 tolerated(0.07) benign(0.09) TCGA-FW-A3R5-06 15 85447412 85447412 C T SLC28A1 Silent p.F182F 0.26 TCGA-FW-A3R5-06 15 85478726 85478726 G A SLC28A1 Missense_Mutation p.G520S 0.10 deleterious(0.04) possibly_damaging(0.881) TCGA-FW-A3R5-06 15 85486685 85486685 G A SLC28A1 Missense_Mutation p.E531K 0.19 deleterious(0) possibly_damaging(0.814) TCGA-FW-A3R5-06 15 85488477 85488477 C T SLC28A1 3'UTR 0.38 TCGA-FW-A3R5-06 15 86124487 86124487 C T AKAP13 Missense_Mutation p.S1063F 0.13 tolerated_low_confidence(0.46) benign(0.001) TCGA-FW-A3R5-06 15 86124798 86124798 C T AKAP13 Missense_Mutation p.H1167Y 0.45 tolerated_low_confidence(1) benign(0.187) TCGA-FW-A3R5-06 15 86124923 86124923 C T AKAP13 Silent p.A1208A 0.19 TCGA-FW-A3R5-06 15 86270294 86270294 C T AKAP13 Intron 0.09 TCGA-FW-A3R5-06 15 86270675 86270675 C T AKAP13 Silent p.T2360T 0.19 TCGA-FW-A3R5-06 15 86697680 86697680 G A AGBL1 Silent p.K48K 0.37 TCGA-FW-A3R5-06 15 86697752 86697752 C T AGBL1 Silent p.L72L 0.45 TCGA-FW-A3R5-06 15 86702171 86702171 G A AGBL1 Missense_Mutation p.M88I 0.22 tolerated(0.25) benign(0) TCGA-FW-A3R5-06 15 86790910 86790910 G A AGBL1 Missense_Mutation p.G133S 0.15 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.37 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 15 86813153 86813153 C T AGBL1 Silent p.F568F 0.19 TCGA-FW-A3R5-06 15 86814879 86814879 G A AGBL1 Missense_Mutation p.E627K 0.15 deleterious(0) possibly_damaging(0.798) TCGA-FW-A3R5-06 15 86940712 86940712 C T AGBL1 Silent p.L784L 0.18 TCGA-FW-A3R5-06 15 88420241 88420241 C T NTRK3 Silent p.L815L 0.17 TCGA-FW-A3R5-06 15 88423632 88423632 G A NTRK3 Missense_Mutation p.R735C 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 88472275 88472275 G A NTRK3 Intron 0.41 TCGA-FW-A3R5-06 15 88472476 88472476 C T NTRK3 Silent p.V693V 0.07 TCGA-FW-A3R5-06 15 88476368 88476368 C T NTRK3 Silent p.E588E 0.12 TCGA-FW-A3R5-06 15 88476386 88476386 C T NTRK3 Silent p.R582R 0.51 TCGA-FW-A3R5-06 15 88669548 88669548 G A NTRK3 Silent p.F450F 0.28 TCGA-FW-A3R5-06 15 88678498 88678498 C T NTRK3 Silent p.K346K 0.07 TCGA-FW-A3R5-06 15 88678521 88678521 C T NTRK3 Missense_Mutation p.G339R 0.12 deleterious(0.03) benign(0.168) TCGA-FW-A3R5-06 15 88690576 88690576 G A NTRK3 Missense_Mutation p.L152F 0.24 deleterious(0.01) benign(0.316) TCGA-FW-A3R5-06 15 89381953 89381953 G A ACAN Missense_Mutation p.G44R 0.51 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 89381960 89381960 C T ACAN Missense_Mutation p.S46F 0.24 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 89385059 89385059 G A ACAN Missense_Mutation p.E240K 0.21 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 89388756 89388756 C T ACAN Missense_Mutation p.P358S 0.40 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 15 89388907 89388907 C T ACAN Missense_Mutation p.S408F 0.22 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 89391179 89391179 G A ACAN Missense_Mutation p.D548N 0.25 tolerated(0.05) unknown(0) TCGA-FW-A3R5-06 15 89392839 89392839 C T ACAN Missense_Mutation p.P635S 0.21 deleterious(0) unknown(0) TCGA-FW-A3R5-06 15 89398297 89398297 G A ACAN Silent p.K827K 0.25 TCGA-FW-A3R5-06 15 89398393 89398393 G A ACAN Silent p.E859E 0.17 TCGA-FW-A3R5-06 15 89398577 89398577 G A ACAN Missense_Mutation p.G921R 0.46 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 15 89398676 89398676 C T ACAN Missense_Mutation p.L954F 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-FW-A3R5-06 15 89398802 89398802 C T ACAN Missense_Mutation p.P996S 0.21 tolerated(0.06) possibly_damaging(0.474) TCGA-FW-A3R5-06 15 89399989 89399989 C T ACAN Silent p.I1391I 0.34 TCGA-FW-A3R5-06 15 89400019 89400019 G A ACAN Silent p.E1401E 0.37 TCGA-FW-A3R5-06 15 89400585 89400585 C T ACAN Missense_Mutation p.P1590L 0.09 deleterious(0.02) benign(0.1) TCGA-FW-A3R5-06 15 89400656 89400656 C T ACAN Silent p.L1614L 0.19 TCGA-FW-A3R5-06 15 89401262 89401262 G A ACAN Missense_Mutation p.V1816I 0.27 tolerated(0.61) possibly_damaging(0.695) TCGA-FW-A3R5-06 15 89401599 89401599 C T ACAN Missense_Mutation p.P1928L 0.25 tolerated(0.15) benign(0.074) TCGA-FW-A3R5-06 15 89401879 89401879 C T ACAN Silent p.A2021A 0.41 TCGA-FW-A3R5-06 15 89402151 89402151 G A ACAN Missense_Mutation p.G2112E 0.21 tolerated(1) benign(0.074) TCGA-FW-A3R5-06 15 89402193 89402193 C T ACAN Missense_Mutation p.S2126F 0.22 tolerated(0.72) benign(0.042) TCGA-FW-A3R5-06 15 89402247 89402247 C T ACAN Missense_Mutation p.S2144F 0.16 deleterious(0) possibly_damaging(0.837) TCGA-FW-A3R5-06 15 89402436 89402436 C T ACAN Missense_Mutation p.S2207L 0.42 deleterious(0.04) benign(0.066) TCGA-FW-A3R5-06 15 89424951 89424951 G A HAPLN3 Missense_Mutation p.L44F 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 15 89430486 89430486 G A HAPLN3 Missense_Mutation p.S15F 0.42 tolerated(0.71) unknown(0) TCGA-FW-A3R5-06 15 89442993 89442993 G A MFGE8 Missense_Mutation p.A307V 0.40 tolerated(0.09) benign(0.143) TCGA-FW-A3R5-06 15 89738534 89738534 C T ABHD2 Silent p.F386F 0.20 TCGA-FW-A3R5-06 15 90129102 90129102 C T TICRR Missense_Mutation p.S447F 0.52 tolerated(0.5) benign(0.187) TCGA-FW-A3R5-06 15 90129103 90129103 C T TICRR Silent p.S447S 0.09 TCGA-FW-A3R5-06 15 90167845 90167845 C T TICRR Missense_Mutation p.P1435L 0.45 deleterious(0.01) possibly_damaging(0.853) TCGA-FW-A3R5-06 15 90177088 90177088 C T KIF7 Silent p.T807T 0.15 TCGA-FW-A3R5-06 15 90214766 90214766 C T PLIN1 Missense_Mutation p.G94S 0.78 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 90255328 90255328 C T WDR93 Silent p.L211L 0.33 TCGA-FW-A3R5-06 15 90276307 90276307 C T WDR93 Silent p.F467F 0.06 TCGA-FW-A3R5-06 15 90286605 90286605 G C WDR93 Missense_Mutation p.E682Q 0.16 deleterious(0.02) possibly_damaging(0.549) TCGA-FW-A3R5-06 15 90293986 90293986 G A MESP1 Silent p.S159S 0.22 TCGA-FW-A3R5-06 15 90347765 90347765 G C ANPEP Missense_Mutation p.F327L 0.06 deleterious(0.01) possibly_damaging(0.474) TCGA-FW-A3R5-06 15 90349346 90349346 C T ANPEP Missense_Mutation p.E157K 0.17 tolerated(0.77) benign(0.014) TCGA-FW-A3R5-06 15 90768248 90768248 C T SEMA4B Missense_Mutation p.L415F 0.21 tolerated(0.07) probably_damaging(0.925) TCGA-FW-A3R5-06 15 90775465 90775465 G A CIB1 Missense_Mutation p.L61F 0.18 deleterious(0.02) benign(0.04) TCGA-FW-A3R5-06 15 90784905 90784905 C T GDPGP1 Silent p.F255F 0.14 TCGA-FW-A3R5-06 15 90793899 90793899 G A TTLL13 Missense_Mutation p.E13K 0.39 tolerated_low_confidence(0.12) benign(0.024) TCGA-FW-A3R5-06 15 90794047 90794047 C T TTLL13 Missense_Mutation p.P62L 0.43 deleterious_low_confidence(0) benign(0.016) TCGA-FW-A3R5-06 15 90799405 90799405 G A TTLL13 Missense_Mutation p.R194Q 0.17 deleterious(0.02) benign(0.109) TCGA-FW-A3R5-06 15 90814604 90814604 C T NGRN Missense_Mutation p.R154W 0.17 deleterious(0.02) possibly_damaging(0.809) TCGA-FW-A3R5-06 15 90892024 90892024 C T GABARAPL3 3'UTR 0.44 TCGA-FW-A3R5-06 15 90897934 90897934 C T ZNF774 Silent p.H14H 0.21 TCGA-FW-A3R5-06 15 90897947 90897947 C T ZNF774 Missense_Mutation p.P19S 0.26 tolerated_low_confidence(0.43) benign(0.003) TCGA-FW-A3R5-06 15 90904247 90904247 G A ZNF774 Missense_Mutation p.R395Q 0.19 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 15 91169121 91169121 C T CRTC3 Missense_Mutation p.A288V 0.12 deleterious(0.04) benign(0.145) TCGA-FW-A3R5-06 15 91169122 91169122 C T CRTC3 Silent p.A288A 0.12 TCGA-FW-A3R5-06 15 91292892 91292892 C T BLM Missense_Mutation p.R132W 0.11 deleterious(0.03) benign(0.306) TCGA-FW-A3R5-06 15 91312713 91312713 C T BLM Missense_Mutation p.R818C 0.41 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 91425128 91425128 C T FURIN 3'UTR 0.27 TCGA-FW-A3R5-06 15 91433170 91433170 G A FES Missense_Mutation p.E343K 0.19 tolerated(0.53) benign(0.001) TCGA-FW-A3R5-06 15 91436511 91436511 C T FES Intron 0.21 TCGA-FW-A3R5-06 15 91449187 91449187 C T MAN2A2 Silent p.V216V 0.30 TCGA-FW-A3R5-06 15 91492021 91492021 C T UNC45A Silent p.P625P 0.28 TCGA-FW-A3R5-06 15 91795141 91795141 C T SV2B Silent p.L182L 0.06 TCGA-FW-A3R5-06 15 91795689 91795689 C T SV2B Silent p.I241I 0.27 TCGA-FW-A3R5-06 15 91795728 91795728 C T SV2B Silent p.A254A 0.17 TCGA-FW-A3R5-06 15 91809811 91809811 G A SV2B Splice_Site p.X337_splice 0.21 TCGA-FW-A3R5-06 15 91811697 91811697 C T SV2B Missense_Mutation p.P412L 0.22 deleterious(0.01) possibly_damaging(0.859) TCGA-FW-A3R5-06 15 91827259 91827259 G A SV2B Missense_Mutation p.E506K 0.09 tolerated(0.45) benign(0.008) TCGA-FW-A3R5-06 15 92459677 92459677 C T SLCO3A1 Missense_Mutation p.S212L 0.11 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 15 92638150 92638150 G T SLCO3A1 Missense_Mutation p.G229V 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 15 92647599 92647599 C G SLCO3A1 Missense_Mutation p.S279C 0.07 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 15 92647601 92647601 C T SLCO3A1 Missense_Mutation p.L280F 0.07 tolerated(0.13) benign(0.098) TCGA-FW-A3R5-06 15 92988086 92988086 G A ST8SIA2 Missense_Mutation p.E257K 0.33 benign(0.244) TCGA-FW-A3R5-06 15 93015448 93015448 G A C15orf32 Missense_Mutation p.G24R 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FW-A3R5-06 15 93015449 93015449 G A C15orf32 Missense_Mutation p.G24E 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FW-A3R5-06 15 93015479 93015479 C T C15orf32 Missense_Mutation p.T34I 0.44 tolerated_low_confidence(0.55) benign(0) TCGA-FW-A3R5-06 15 93016251 93016251 G A C15orf32 Missense_Mutation p.G148E 0.47 tolerated_low_confidence(0.67) benign(0.019) TCGA-FW-A3R5-06 15 93499834 93499834 C T CHD2 Missense_Mutation p.S652F 0.26 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 15 93518142 93518142 A T CHD2 Nonsense_Mutation p.K847* 0.23 TCGA-FW-A3R5-06 15 93528871 93528871 C T CHD2 Silent p.L1127L 0.37 TCGA-FW-A3R5-06 15 93588254 93588254 G A RGMA Silent p.L451L 0.53 TCGA-FW-A3R5-06 15 93588319 93588319 G A RGMA Missense_Mutation p.P429L 0.50 tolerated(0.18) unknown(0) TCGA-FW-A3R5-06 15 94841843 94841843 G A MCTP2 Missense_Mutation p.E117K 0.14 tolerated(0.34) benign(0.044) TCGA-FW-A3R5-06 15 94841951 94841951 G A MCTP2 Missense_Mutation p.E153K 0.22 tolerated(0.22) benign(0.002) TCGA-FW-A3R5-06 15 94882608 94882608 G A MCTP2 Missense_Mutation p.D243N 0.22 tolerated(0.68) benign(0.23) TCGA-FW-A3R5-06 15 94884136 94884136 G A MCTP2 Missense_Mutation p.G318S 0.16 tolerated(0.15) benign(0.028) TCGA-FW-A3R5-06 15 94884139 94884139 G A MCTP2 Missense_Mutation p.D319N 0.17 tolerated(0.06) benign(0.005) TCGA-FW-A3R5-06 15 94888377 94888377 G A MCTP2 Missense_Mutation p.R330Q 0.08 tolerated(0.17) benign(0.004) TCGA-FW-A3R5-06 15 94888394 94888394 G A MCTP2 Splice_Site p.X335_splice 0.13 TCGA-FW-A3R5-06 15 94899510 94899510 G A MCTP2 Missense_Mutation p.D384N 0.45 tolerated(0.18) benign(0.026) TCGA-FW-A3R5-06 15 94927321 94927321 C T MCTP2 Silent p.N551N 0.43 TCGA-FW-A3R5-06 15 94945194 94945194 C T MCTP2 Silent p.F677F 0.15 TCGA-FW-A3R5-06 15 94983447 94983447 C T MCTP2 Missense_Mutation p.P710S 0.11 deleterious(0.01) possibly_damaging(0.816) TCGA-FW-A3R5-06 15 94983448 94983448 C T MCTP2 Missense_Mutation p.P710L 0.11 deleterious(0) benign(0.248) TCGA-FW-A3R5-06 15 97327486 97327486 G A SPATA8 Missense_Mutation p.E65K 0.17 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-FW-A3R5-06 15 98512567 98512567 C T ARRDC4 Silent p.S280S 0.50 TCGA-FW-A3R5-06 15 98513881 98513881 C T ARRDC4 Missense_Mutation p.P370S 0.51 tolerated(0.23) benign(0.11) TCGA-FW-A3R5-06 15 98514412 98514412 C T ARRDC4 Missense_Mutation p.L418F 0.07 deleterious_low_confidence(0) benign(0.037) TCGA-FW-A3R5-06 15 98995178 98995178 G A FAM169B Silent p.F82F 0.11 TCGA-FW-A3R5-06 15 99456460 99456460 C T IGF1R Missense_Mutation p.H593Y 0.15 tolerated(0.09) benign(0.266) TCGA-FW-A3R5-06 15 99500804 99500804 C T IGF1R 3'UTR 0.31 TCGA-FW-A3R5-06 15 99670140 99670140 C T SYNM Silent p.F524F 0.51 TCGA-FW-A3R5-06 15 99740154 99740154 G A TTC23 Silent p.L243L 0.41 TCGA-FW-A3R5-06 15 99759112 99759112 G A TTC23 Missense_Mutation p.S149F 0.42 deleterious(0.02) possibly_damaging(0.78) TCGA-FW-A3R5-06 15 99828126 99828126 G A LRRC28 Missense_Mutation p.A119T 0.14 tolerated(0.28) benign(0.023) TCGA-FW-A3R5-06 16 10031943 10031943 C T GRIN2A Missense_Mutation p.D294N 0.27 tolerated(0.06) probably_damaging(0.975) TCGA-FW-A3R5-06 16 10273996 10273996 G A GRIN2A Silent p.S91S 0.20 TCGA-FW-A3R5-06 16 10274034 10274034 G A GRIN2A Missense_Mutation p.P79S 0.19 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 16 10274047 10274047 C T GRIN2A Missense_Mutation p.M74I 0.34 tolerated(0.15) benign(0.006) TCGA-FW-A3R5-06 16 10524919 10524919 C T ATF7IP2 Nonsense_Mutation p.Q148* 0.15 TCGA-FW-A3R5-06 16 10525053 10525053 G A ATF7IP2 Silent p.K192K 0.09 TCGA-FW-A3R5-06 16 10534239 10534239 C T ATF7IP2 Nonsense_Mutation p.Q372* 0.11 TCGA-FW-A3R5-06 16 10551334 10551334 G A ATF7IP2 Missense_Mutation p.G434R 0.27 deleterious(0.02) benign(0.111) TCGA-FW-A3R5-06 16 10576035 10576035 G A ATF7IP2 Missense_Mutation p.D660N 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 10721541 10721541 C T TEKT5 Missense_Mutation p.E453K 0.18 deleterious(0) possibly_damaging(0.883) TCGA-FW-A3R5-06 16 10769819 10769819 C T TEKT5 Silent p.A361A 0.09 TCGA-FW-A3R5-06 16 10788459 10788459 G A TEKT5 Missense_Mutation p.P91L 0.19 deleterious(0.04) benign(0.033) TCGA-FW-A3R5-06 16 10788473 10788473 G A TEKT5 Silent p.F86F 0.31 TCGA-FW-A3R5-06 16 11000810 11000810 C T CIITA Silent p.I487I 0.30 TCGA-FW-A3R5-06 16 11004048 11004048 G A CIITA Silent p.T940T 0.16 TCGA-FW-A3R5-06 16 11009471 11009471 G A CIITA Missense_Mutation p.R978Q 0.15 tolerated(0.13) benign(0.048) TCGA-FW-A3R5-06 16 11154776 11154776 C T CLEC16A Silent p.F671F 0.21 TCGA-FW-A3R5-06 16 1128847 1128847 G A SSTR5 5'UTR 0.30 TCGA-FW-A3R5-06 16 1129702 1129702 G A SSTR5 Silent p.Q278Q 0.18 TCGA-FW-A3R5-06 16 11361859 11361859 G A TNP2 Silent p.S137S 0.39 TCGA-FW-A3R5-06 16 11363045 11363045 G A TNP2 Silent p.T25T 0.20 TCGA-FW-A3R5-06 16 11370248 11370248 C T PRM2 5'UTR 0.40 TCGA-FW-A3R5-06 16 11374696 11374696 G A PRM1 3'UTR 0.36 TCGA-FW-A3R5-06 16 11862215 11862215 G A ZC3H7A Missense_Mutation p.T439I 0.30 deleterious(0) possibly_damaging(0.703) TCGA-FW-A3R5-06 16 11931783 11931783 G A RSL1D1 Missense_Mutation p.S445L 0.35 tolerated(0.21) benign(0.006) TCGA-FW-A3R5-06 16 11941590 11941590 G A RSL1D1 Missense_Mutation p.P107S 0.19 tolerated(0.25) benign(0.145) TCGA-FW-A3R5-06 16 12060155 12060155 G A TNFRSF17 Silent p.R78R 0.23 TCGA-FW-A3R5-06 16 12145944 12145944 C T SNX29 Missense_Mutation p.S330F 0.21 tolerated_low_confidence(0.76) benign(0.015) TCGA-FW-A3R5-06 16 1248754 1248754 C T CACNA1H Silent p.F261F 0.15 TCGA-FW-A3R5-06 16 1254125 1254125 C T CACNA1H Silent p.A706A 0.22 TCGA-FW-A3R5-06 16 1258015 1258015 C T CACNA1H Silent p.L1053L 0.33 TCGA-FW-A3R5-06 16 1260591 1260591 C T CACNA1H Silent p.V1326V 0.19 TCGA-FW-A3R5-06 16 1262101 1262101 G A CACNA1H Silent p.E1574E 0.14 TCGA-FW-A3R5-06 16 1270553 1270553 C T CACNA1H Silent p.S2207S 0.38 TCGA-FW-A3R5-06 16 1270770 1270770 C T CACNA1H Missense_Mutation p.P2280S 0.26 tolerated_low_confidence(0.85) benign(0.001) TCGA-FW-A3R5-06 16 1272059 1272059 C T TPSG1 Missense_Mutation p.G232D 0.30 tolerated(0.21) benign(0.027) TCGA-FW-A3R5-06 16 1272244 1272244 G A TPSG1 Silent p.I203I 0.16 TCGA-FW-A3R5-06 16 1279235 1279235 C T TPSB2 Missense_Mutation 0.38 TCGA-FW-A3R5-06 16 1279691 1279691 C T TPSB2 Missense_Mutation p.A37T 0.19 deleterious(0.02) possibly_damaging(0.587) TCGA-FW-A3R5-06 16 12798716 12798716 G A CPPED1 Silent p.F160F 0.24 TCGA-FW-A3R5-06 16 1389508 1389508 C T BAIAP3 Silent p.L139L 0.32 TCGA-FW-A3R5-06 16 1395328 1395328 G A BAIAP3 Silent p.R708R 0.39 TCGA-FW-A3R5-06 16 1396269 1396269 G A BAIAP3 Silent p.G835G 0.20 TCGA-FW-A3R5-06 16 14339441 14339441 C T MKL2 Missense_Mutation p.P379L 0.20 deleterious(0) possibly_damaging(0.679) TCGA-FW-A3R5-06 16 14341131 14341131 C T MKL2 Missense_Mutation p.L672F 0.35 tolerated(0.72) possibly_damaging(0.877) TCGA-FW-A3R5-06 16 14355033 14355033 T C MKL2 Missense_Mutation p.L961P 0.09 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 16 14711453 14711453 G A PARN Nonsense_Mutation p.R128* 0.19 TCGA-FW-A3R5-06 16 14738443 14738443 C T BFAR Silent p.F80F 0.25 TCGA-FW-A3R5-06 16 1497080 1497080 G A CLCN7 Missense_Mutation p.S753L 0.33 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 16 14988857 14988857 G A NOMO1 Silent p.R1149R 0.07 TCGA-FW-A3R5-06 16 14989431 14989431 G A NOMO1 Missense_Mutation p.A1200T 0.09 tolerated(0.85) benign(0.003) TCGA-FW-A3R5-06 16 14989915 14989915 C T NOMO1 3'UTR 0.14 TCGA-FW-A3R5-06 16 15122865 15122865 C T PDXDC1 Intron 0.19 TCGA-FW-A3R5-06 16 1536177 1536177 G A PTX4 Silent p.S395S 0.27 TCGA-FW-A3R5-06 16 1537698 1537698 C T PTX4 Missense_Mutation p.E134K 0.28 tolerated(0.08) benign(0.126) TCGA-FW-A3R5-06 16 1556972 1556972 C T TELO2 Missense_Mutation p.L716F 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 16 15706608 15706608 G A KIAA0430 Missense_Mutation p.P1094S 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 16 15793636 15793636 C T NDE1 Intron 0.29 TCGA-FW-A3R5-06 16 15809077 15809077 C T MYH11 Missense_Mutation p.E1860K 0.31 benign(0.403) TCGA-FW-A3R5-06 16 15815444 15815444 C T MYH11 Silent p.R1478R 0.13 TCGA-FW-A3R5-06 16 15818899 15818899 C T NDE1 3'UTR 0.39 TCGA-FW-A3R5-06 16 15826454 15826454 C T MYH11 Silent p.E1213E 0.20 TCGA-FW-A3R5-06 16 15829321 15829321 C T MYH11 Silent p.K1143K 0.32 TCGA-FW-A3R5-06 16 15831419 15831419 C T MYH11 Silent p.L1067L 0.20 TCGA-FW-A3R5-06 16 15917200 15917200 G A MYH11 Silent p.I138I 0.31 TCGA-FW-A3R5-06 16 15931994 15931994 G A MYH11 Missense_Mutation p.P39L 0.13 possibly_damaging(0.881) TCGA-FW-A3R5-06 16 16126970 16126970 C T ABCC1 Missense_Mutation p.P207L 0.17 deleterious(0.03) probably_damaging(0.973) TCGA-FW-A3R5-06 16 16138400 16138400 C T ABCC1 Silent p.I301I 0.27 TCGA-FW-A3R5-06 16 16205242 16205242 C T ABCC1 Missense_Mutation p.S961F 0.27 deleterious(0) possibly_damaging(0.841) TCGA-FW-A3R5-06 16 16230351 16230351 C T ABCC1 Missense_Mutation p.S1381L 0.17 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 16 16272764 16272764 C T ABCC6 Missense_Mutation p.R769K 0.25 tolerated(0.77) benign(0.008) TCGA-FW-A3R5-06 16 16276673 16276673 G A ABCC6 Silent p.F686F 0.26 TCGA-FW-A3R5-06 16 16276744 16276744 C T ABCC6 Missense_Mutation p.G663S 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 16282772 16282772 C T ABCC6 Silent p.E565E 0.26 TCGA-FW-A3R5-06 16 16315466 16315466 G A ABCC6 Intron 0.26 TCGA-FW-A3R5-06 16 16315656 16315656 G A ABCC6 Silent p.A23A 0.33 TCGA-FW-A3R5-06 16 1634338 1634338 G A IFT140 Silent p.F413F 0.30 TCGA-FW-A3R5-06 16 16345917 16345917 C T NOMO3 Missense_Mutation p.S278L 0.26 deleterious(0.04) benign(0.014) TCGA-FW-A3R5-06 16 16349589 16349589 G A NOMO3 Missense_Mutation p.V326I 0.25 tolerated(0.11) benign(0.009) TCGA-FW-A3R5-06 16 1657262 1657262 G A IFT140 Silent p.A2A 0.25 TCGA-FW-A3R5-06 16 17228395 17228395 G A XYLT1 Silent p.S654S 0.25 TCGA-FW-A3R5-06 16 17235031 17235031 G A XYLT1 Silent p.S522S 0.10 TCGA-FW-A3R5-06 16 17235032 17235032 G A XYLT1 Missense_Mutation p.S522F 0.10 deleterious(0.01) possibly_damaging(0.866) TCGA-FW-A3R5-06 16 17294426 17294426 C T XYLT1 Silent p.V333V 0.27 TCGA-FW-A3R5-06 16 17353254 17353254 G A XYLT1 Silent p.F168F 0.22 TCGA-FW-A3R5-06 16 17353332 17353332 C T XYLT1 Silent p.P142P 0.21 TCGA-FW-A3R5-06 16 1838710 1838710 C T NUBP2 Missense_Mutation p.P271S 0.16 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 16 18434320 18434320 C T NPIPA8 5'Flank 0.15 TCGA-FW-A3R5-06 16 18532111 18532111 G A NOMO2 Missense_Mutation p.S750L 0.10 tolerated(0.73) benign(0) TCGA-FW-A3R5-06 16 18544465 18544465 G A NOMO2 Silent p.F419F 0.18 TCGA-FW-A3R5-06 16 18603886 18603886 C T ABCC6P1 RNA 0.38 TCGA-FW-A3R5-06 16 18871008 18871008 G A SMG1 Missense_Mutation p.P1275S 0.34 tolerated(0.3) probably_damaging(0.986) TCGA-FW-A3R5-06 16 19047005 19047005 G A TMC7 Missense_Mutation p.E289K 0.16 tolerated(0.49) benign(0.003) TCGA-FW-A3R5-06 16 19067962 19067962 C T TMC7 Missense_Mutation p.S657F 0.29 deleterious(0.02) benign(0.322) TCGA-FW-A3R5-06 16 19070842 19070842 C T TMC7 Intron 0.31 TCGA-FW-A3R5-06 16 19070876 19070876 G A TMC7 Intron 0.24 TCGA-FW-A3R5-06 16 19184088 19184088 C T SYT17 Missense_Mutation p.P8S 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FW-A3R5-06 16 19184157 19184157 C T SYT17 Intron 0.18 TCGA-FW-A3R5-06 16 19191795 19191795 C T SYT17 Missense_Mutation p.P89S 0.22 tolerated(0.17) benign(0.205) TCGA-FW-A3R5-06 16 19194885 19194885 G A SYT17 Missense_Mutation p.D123N 0.10 deleterious(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 16 19195023 19195023 G A SYT17 Missense_Mutation p.D169N 0.22 tolerated(0.08) benign(0.009) TCGA-FW-A3R5-06 16 19195292 19195292 G A SYT17 Silent p.E258E 0.12 TCGA-FW-A3R5-06 16 19195304 19195304 C T SYT17 Silent p.F262F 0.35 TCGA-FW-A3R5-06 16 19236122 19236122 C T SYT17 Missense_Mutation p.P397L 0.24 deleterious(0) possibly_damaging(0.6) TCGA-FW-A3R5-06 16 19451867 19451867 C T TMC5 Silent p.N169N 0.24 TCGA-FW-A3R5-06 16 19451950 19451950 C T TMC5 Missense_Mutation p.P197L 0.14 deleterious_low_confidence(0) benign(0.118) TCGA-FW-A3R5-06 16 19460865 19460865 G A TMC5 Silent p.V320V 0.19 TCGA-FW-A3R5-06 16 19468081 19468081 C T TMC5 Intron 0.34 TCGA-FW-A3R5-06 16 19471629 19471629 G A TMC5 Missense_Mutation p.R374K 0.28 tolerated(0.52) benign(0.002) TCGA-FW-A3R5-06 16 19483433 19483433 G A TMC5 Silent p.Q602Q 0.18 TCGA-FW-A3R5-06 16 19483563 19483563 G A TMC5 Missense_Mutation p.E646K 0.32 tolerated(0.6) benign(0.003) TCGA-FW-A3R5-06 16 19492695 19492695 C T TMC5 Silent p.I757I 0.11 TCGA-FW-A3R5-06 16 19498517 19498517 C T TMC5 Silent p.I814I 0.22 TCGA-FW-A3R5-06 16 19547601 19547601 C T CCP110 Missense_Mutation p.P204S 0.33 tolerated(0.45) benign(0) TCGA-FW-A3R5-06 16 19547602 19547602 C T CCP110 Missense_Mutation p.P204L 0.34 tolerated(0.72) benign(0) TCGA-FW-A3R5-06 16 19580865 19580865 C T C16orf62 Silent p.L168L 0.11 TCGA-FW-A3R5-06 16 19592859 19592859 G A C16orf62 Missense_Mutation p.E264K 0.19 tolerated(0.06) benign(0.047) TCGA-FW-A3R5-06 16 1962130 1962130 G A HS3ST6 Missense_Mutation p.P133S 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 16 20043700 20043700 G A GPR139 Missense_Mutation p.S140L 0.26 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 16 20043735 20043735 G A GPR139 Silent p.I128I 0.23 TCGA-FW-A3R5-06 16 20043742 20043742 C T GPR139 Missense_Mutation p.R126K 0.23 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 16 20043912 20043912 G A GPR139 Silent p.L69L 0.35 TCGA-FW-A3R5-06 16 2004666 2004666 C T RPL3L 5'UTR 0.17 TCGA-FW-A3R5-06 16 2024083 2024083 C T TBL3 Missense_Mutation p.P23L 0.19 deleterious(0) possibly_damaging(0.855) TCGA-FW-A3R5-06 16 2025692 2025692 C T TBL3 Missense_Mutation p.S323F 0.21 deleterious(0.04) possibly_damaging(0.615) TCGA-FW-A3R5-06 16 2026061 2026061 C T TBL3 Silent p.I378I 0.30 TCGA-FW-A3R5-06 16 202971 202971 G A HBZ Silent p.Q21Q 0.13 TCGA-FW-A3R5-06 16 20328616 20328616 G A GP2 Silent p.F448F 0.10 TCGA-FW-A3R5-06 16 20328687 20328687 G A GP2 Nonsense_Mutation p.Q425* 0.18 TCGA-FW-A3R5-06 16 20329572 20329572 C T GP2 Silent p.R399R 0.16 TCGA-FW-A3R5-06 16 20329723 20329723 C T GP2 Missense_Mutation p.G349E 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 20329750 20329750 G A GP2 Missense_Mutation p.S340F 0.26 deleterious(0) benign(0.045) TCGA-FW-A3R5-06 16 20335524 20335524 G A GP2 Missense_Mutation p.A50V 0.15 tolerated(0.3) benign(0.027) TCGA-FW-A3R5-06 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.40 deleterious(0) possibly_damaging(0.505) TCGA-FW-A3R5-06 16 20337703 20337703 G A GP2 Silent p.A17A 0.29 TCGA-FW-A3R5-06 16 20376776 20376776 G A PDILT Silent p.V401V 0.10 TCGA-FW-A3R5-06 16 20387405 20387405 G A PDILT Silent p.I176I 0.22 TCGA-FW-A3R5-06 16 20422911 20422911 C T ACSM5 Silent p.I35I 0.28 TCGA-FW-A3R5-06 16 2042728 2042728 G A SYNGR3 Silent p.G143G 0.39 TCGA-FW-A3R5-06 16 20430791 20430791 G A ACSM5 Intron 0.26 TCGA-FW-A3R5-06 16 20442548 20442548 G A ACSM5 Missense_Mutation p.D405N 0.09 deleterious(0.02) possibly_damaging(0.794) TCGA-FW-A3R5-06 16 20448675 20448675 C T ACSM5 Missense_Mutation p.P508S 0.15 deleterious(0.03) benign(0.181) TCGA-FW-A3R5-06 16 20476860 20476860 C T ACSM2A Missense_Mutation p.P67S 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 20476983 20476983 C T ACSM2A Missense_Mutation p.R108C 0.29 deleterious(0.02) benign(0.41) TCGA-FW-A3R5-06 16 20480926 20480926 G A ACSM2A Missense_Mutation p.D161N 0.21 deleterious(0.03) possibly_damaging(0.794) TCGA-FW-A3R5-06 16 20482500 20482500 C T ACSM2A Silent p.S234S 0.16 TCGA-FW-A3R5-06 16 20486717 20486717 G A ACSM2A Missense_Mutation p.G310S 0.25 tolerated(0.78) benign(0.042) TCGA-FW-A3R5-06 16 20488720 20488720 G A ACSM2A Missense_Mutation p.M376I 0.20 tolerated(0.09) benign(0.375) TCGA-FW-A3R5-06 16 20489922 20489922 C T ACSM2A Silent p.L402L 0.09 TCGA-FW-A3R5-06 16 20491956 20491956 G A ACSM2A Missense_Mutation p.G448E 0.09 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 16 20492183 20492183 G A ACSM2A Missense_Mutation p.M483I 0.32 tolerated(1) benign(0.119) TCGA-FW-A3R5-06 16 20492235 20492235 C T ACSM2A Nonsense_Mutation p.R501* 0.23 TCGA-FW-A3R5-06 16 2049525 2049525 G A ZNF598 Silent p.P675P 0.24 TCGA-FW-A3R5-06 16 20497945 20497945 G A ACSM2A Missense_Mutation p.R560Q 0.23 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 16 20498006 20498006 C T ACSM2A 3'UTR 0.33 TCGA-FW-A3R5-06 16 20548474 20548474 C T ACSM2B 3'UTR 0.38 TCGA-FW-A3R5-06 16 20548484 20548484 C T ACSM2B 3'UTR 0.16 TCGA-FW-A3R5-06 16 20548670 20548670 C T ACSM2B Silent p.L548L 0.33 TCGA-FW-A3R5-06 16 20554463 20554463 G A ACSM2B Missense_Mutation p.S468F 0.14 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 16 20554523 20554523 C T ACSM2B Missense_Mutation p.G448E 0.05 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 16 20556494 20556494 G A ACSM2B Silent p.I422I 0.21 TCGA-FW-A3R5-06 16 20559433 20559433 C T ACSM2B Missense_Mutation p.R350K 0.17 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 16 20565115 20565115 C T ACSM2B Missense_Mutation p.A242T 0.32 tolerated(0.39) possibly_damaging(0.514) TCGA-FW-A3R5-06 16 20565171 20565171 C T ACSM2B Missense_Mutation p.G223E 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 20565172 20565172 C T ACSM2B Missense_Mutation p.G223R 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 20576124 20576124 C T ACSM2B Missense_Mutation p.G15D 0.20 tolerated(0.12) benign(0.128) TCGA-FW-A3R5-06 16 20634826 20634826 C T ACSM1 Silent p.K572K 0.20 TCGA-FW-A3R5-06 16 20634834 20634834 G A ACSM1 Missense_Mutation p.R570W 0.31 deleterious(0.01) benign(0.115) TCGA-FW-A3R5-06 16 20636757 20636757 C T ACSM1 Silent p.P505P 0.59 TCGA-FW-A3R5-06 16 20648554 20648554 G A ACSM1 Intron 0.22 TCGA-FW-A3R5-06 16 20702496 20702496 C T ACSM1 Missense_Mutation p.M5I 0.27 tolerated(0.28) benign(0.01) TCGA-FW-A3R5-06 16 20702523 20702523 C T ACSM1 5'UTR 0.28 TCGA-FW-A3R5-06 16 20702527 20702527 G A ACSM1 5'UTR 0.28 TCGA-FW-A3R5-06 16 20803324 20803324 G A ACSM3 Missense_Mutation p.D443N 0.36 tolerated(0.35) benign(0.055) TCGA-FW-A3R5-06 16 20871407 20871407 G A DCUN1D3 Missense_Mutation p.S239F 0.17 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 16 20873685 20873685 G A DCUN1D3 Missense_Mutation p.A59V 0.34 tolerated(0.52) benign(0.001) TCGA-FW-A3R5-06 16 20955880 20955880 G A DNAH3 Silent p.L3817L 0.31 TCGA-FW-A3R5-06 16 20966148 20966148 G A DNAH3 Silent p.N3686N 0.20 TCGA-FW-A3R5-06 16 20974824 20974824 G A DNAH3 Missense_Mutation p.P3461L 0.14 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 16 20975341 20975341 C T DNAH3 Missense_Mutation p.E3289K 0.29 tolerated(0.31) benign(0.002) TCGA-FW-A3R5-06 16 20975383 20975383 C T DNAH3 Missense_Mutation p.E3275K 0.26 tolerated(0.42) benign(0.086) TCGA-FW-A3R5-06 16 20975411 20975411 G A DNAH3 Silent p.S3265S 0.23 TCGA-FW-A3R5-06 16 20975912 20975912 C T DNAH3 Silent p.A3098A 0.29 TCGA-FW-A3R5-06 16 20976098 20976098 G A DNAH3 Silent p.F3036F 0.28 TCGA-FW-A3R5-06 16 20976196 20976196 C T DNAH3 Missense_Mutation p.G3004R 0.28 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 16 20976700 20976700 C T DNAH3 Missense_Mutation p.D2836N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 16 20990669 20990669 C T DNAH3 Missense_Mutation p.D2687N 0.23 tolerated(0.13) benign(0.103) TCGA-FW-A3R5-06 16 20990797 20990797 C T DNAH3 Missense_Mutation p.R2644Q 0.32 tolerated(0.63) benign(0.037) TCGA-FW-A3R5-06 16 20994161 20994161 G A DNAH3 Missense_Mutation p.P2581S 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 16 20996624 20996624 G A DNAH3 Silent p.V2480V 0.57 TCGA-FW-A3R5-06 16 20996782 20996782 C T DNAH3 Missense_Mutation p.G2428S 0.40 tolerated(0.4) probably_damaging(1) TCGA-FW-A3R5-06 16 20999045 20999045 C T DNAH3 Silent p.G2284G 0.19 TCGA-FW-A3R5-06 16 21035984 21035984 C T DNAH3 Nonsense_Mutation p.W1860* 0.09 TCGA-FW-A3R5-06 16 21042517 21042517 C T DNAH3 Silent p.V1763V 0.23 TCGA-FW-A3R5-06 16 21063133 21063133 G A DNAH3 Nonsense_Mutation p.Q1366* 0.32 TCGA-FW-A3R5-06 16 21086851 21086851 C T DNAH3 Missense_Mutation p.E1001K 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 21098223 21098223 G A DNAH3 Missense_Mutation p.P942S 0.20 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 16 21122984 21122984 G A DNAH3 Nonsense_Mutation p.Q688* 0.22 TCGA-FW-A3R5-06 16 21132126 21132126 C T DNAH3 Missense_Mutation p.R545Q 0.24 tolerated(0.53) benign(0) TCGA-FW-A3R5-06 16 21136525 21136525 C T DNAH3 Missense_Mutation p.D459N 0.13 deleterious(0.04) benign(0.056) TCGA-FW-A3R5-06 16 21145600 21145600 C T DNAH3 Silent p.L354L 0.21 TCGA-FW-A3R5-06 16 21145707 21145707 G A DNAH3 Missense_Mutation p.P319S 0.20 tolerated(0.16) benign(0.126) TCGA-FW-A3R5-06 16 21208825 21208825 C T ZP2 Silent p.E738E 0.11 TCGA-FW-A3R5-06 16 21211172 21211172 C T ZP2 Silent p.Q574Q 0.18 TCGA-FW-A3R5-06 16 21213314 21213314 C T ZP2 Missense_Mutation p.E440K 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 21213507 21213507 G T ZP2 Missense_Mutation p.S402Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 16 21214532 21214532 G A ZP2 Missense_Mutation p.S338L 0.21 deleterious(0.02) benign(0.111) TCGA-FW-A3R5-06 16 21215530 21215530 G A ZP2 Missense_Mutation p.P265S 0.22 tolerated(0.32) benign(0.011) TCGA-FW-A3R5-06 16 21221496 21221496 C T ZP2 Missense_Mutation p.E57K 0.25 tolerated(0.18) benign(0.021) TCGA-FW-A3R5-06 16 21261887 21261887 G A ANKS4B Missense_Mutation p.D334N 0.32 tolerated(0.28) benign(0.003) TCGA-FW-A3R5-06 16 2129298 2129298 C T TSC2 Silent p.L1051L 0.37 TCGA-FW-A3R5-06 16 2138110 2138110 C T TSC2 Silent p.F1710F 0.15 TCGA-FW-A3R5-06 16 2150448 2150448 G A PKD1 Missense_Mutation p.P3173S 0.09 benign(0.087) TCGA-FW-A3R5-06 16 2153339 2153339 C A PKD1 Missense_Mutation p.A2907S 0.14 benign(0.066) TCGA-FW-A3R5-06 16 2164218 2164218 G A PKD1 Missense_Mutation p.R936C 0.20 possibly_damaging(0.776) TCGA-FW-A3R5-06 16 216426 216426 G A HBM Silent p.A84A 0.36 TCGA-FW-A3R5-06 16 21690356 21690356 G A OTOA Splice_Site p.X41_splice 0.11 TCGA-FW-A3R5-06 16 21702955 21702955 G A OTOA Missense_Mutation p.R229K 0.15 tolerated(0.23) benign(0.068) TCGA-FW-A3R5-06 16 21709108 21709108 C T OTOA Missense_Mutation p.S251L 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 16 21712328 21712328 G A OTOA Silent p.R320R 0.28 TCGA-FW-A3R5-06 16 21716443 21716443 G A OTOA Intron 0.28 TCGA-FW-A3R5-06 16 21739650 21739650 C T OTOA Missense_Mutation p.S702F 0.23 deleterious(0) possibly_damaging(0.851) TCGA-FW-A3R5-06 16 21858755 21858755 G A NPIPB4 Silent p.T76T 0.14 TCGA-FW-A3R5-06 16 22130333 22130333 C T VWA3A Silent p.T367T 0.33 TCGA-FW-A3R5-06 16 22132409 22132409 G A VWA3A Missense_Mutation p.V413I 0.11 tolerated(0.55) benign(0.001) TCGA-FW-A3R5-06 16 22149821 22149821 G A VWA3A Silent p.L760L 0.10 TCGA-FW-A3R5-06 16 22163861 22163861 C T VWA3A Missense_Mutation p.A1104V 0.32 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 16 2222201 2222201 C T TRAF7 Missense_Mutation p.P162L 0.17 deleterious(0.02) probably_damaging(0.941) TCGA-FW-A3R5-06 16 22358533 22358533 G A CDR2 Missense_Mutation p.S373F 0.15 deleterious(0.03) possibly_damaging(0.514) TCGA-FW-A3R5-06 16 223651 223651 C T HBA2 3'UTR 0.33 TCGA-FW-A3R5-06 16 22558274 22558274 C T RP11-368J21.3 RNA 0.10 TCGA-FW-A3R5-06 16 22588008 22588008 C T RP11-368J21.3 RNA 0.14 TCGA-FW-A3R5-06 16 22926942 22926942 C T HS3ST2 3'UTR 0.33 TCGA-FW-A3R5-06 16 22926961 22926961 C T HS3ST2 3'UTR 0.34 TCGA-FW-A3R5-06 16 23079830 23079830 G A USP31 Missense_Mutation p.S1199F 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 16 23080255 23080255 G A USP31 Silent p.S1057S 0.22 TCGA-FW-A3R5-06 16 23080766 23080766 G A USP31 Missense_Mutation p.S887L 0.11 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-FW-A3R5-06 16 23083503 23083503 G A USP31 Missense_Mutation p.S784F 0.25 deleterious(0.01) benign(0.143) TCGA-FW-A3R5-06 16 23117572 23117572 G A USP31 Silent p.F305F 0.24 TCGA-FW-A3R5-06 16 23197734 23197734 C T SCNN1G Missense_Mutation p.R48C 0.15 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 16 23203759 23203759 G A SCNN1G Missense_Mutation p.M235I 0.10 tolerated(0.3) benign(0.021) TCGA-FW-A3R5-06 16 23208684 23208684 C T SCNN1G Missense_Mutation p.P338L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 23224167 23224167 G T SCNN1G Missense_Mutation p.E461D 0.11 tolerated(0.13) possibly_damaging(0.788) TCGA-FW-A3R5-06 16 23226080 23226080 G A SCNN1G Missense_Mutation p.R514K 0.33 tolerated(0.08) possibly_damaging(0.524) TCGA-FW-A3R5-06 16 23226490 23226490 C T SCNN1G Silent p.I550I 0.19 TCGA-FW-A3R5-06 16 23226608 23226608 G A SCNN1G Missense_Mutation p.G590S 0.24 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 16 2336706 2336706 G A ABCA3 Silent p.D1089D 0.22 TCGA-FW-A3R5-06 16 23379202 23379202 C T SCNN1B Missense_Mutation p.H268Y 0.21 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 16 23391470 23391470 G A SCNN1B Missense_Mutation p.E508K 0.19 tolerated(0.21) benign(0.41) TCGA-FW-A3R5-06 16 23409421 23409421 G A COG7 Silent p.T611T 0.25 TCGA-FW-A3R5-06 16 23428365 23428365 G A COG7 Silent p.A405A 0.22 TCGA-FW-A3R5-06 16 23492068 23492068 G A GGA2 Missense_Mutation p.L302F 0.32 deleterious(0.04) possibly_damaging(0.752) TCGA-FW-A3R5-06 16 2350132 2350132 C T ABCA3 Silent p.G495G 0.33 TCGA-FW-A3R5-06 16 23619259 23619259 G A PALB2 Silent p.L1092L 0.21 TCGA-FW-A3R5-06 16 23647609 23647609 G A PALB2 Silent p.T86T 0.36 TCGA-FW-A3R5-06 16 23713758 23713758 C T ERN2 Missense_Mutation p.R393K 0.26 tolerated(0.79) benign(0.016) TCGA-FW-A3R5-06 16 23716293 23716293 G A ERN2 Silent p.F303F 0.19 TCGA-FW-A3R5-06 16 2376115 2376115 G A ABCA3 Missense_Mutation p.P72L 0.16 tolerated(0.6) benign(0.009) TCGA-FW-A3R5-06 16 24268037 24268037 C T CACNG3 5'UTR 0.19 TCGA-FW-A3R5-06 16 24366209 24366209 C T CACNG3 Silent p.F117F 0.27 TCGA-FW-A3R5-06 16 24372859 24372859 G A CACNG3 Missense_Mutation p.R208Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 16 24373028 24373028 G A CACNG3 Missense_Mutation p.M264I 0.16 tolerated(0.06) benign(0.064) TCGA-FW-A3R5-06 16 24578591 24578591 C T RBBP6 Missense_Mutation p.P573S 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.641) TCGA-FW-A3R5-06 16 24578598 24578598 C T RBBP6 Missense_Mutation p.P575L 0.20 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 16 24802755 24802755 C T TNRC6A Missense_Mutation p.S931F 0.30 deleterious(0.04) benign(0.352) TCGA-FW-A3R5-06 16 24902212 24902212 G A SLC5A11 Missense_Mutation p.M229I 0.24 tolerated(0.05) benign(0.005) TCGA-FW-A3R5-06 16 24909430 24909430 G A SLC5A11 Missense_Mutation p.D336N 0.10 tolerated(0.08) benign(0.258) TCGA-FW-A3R5-06 16 24918476 24918476 G A SLC5A11 Silent p.K415K 0.15 TCGA-FW-A3R5-06 16 2498891 2498891 C T CCNF Missense_Mutation p.A377V 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 2511077 2511077 C T C16orf59 Missense_Mutation p.P153S 0.11 tolerated(0.22) benign(0.044) TCGA-FW-A3R5-06 16 2511789 2511789 C T C16orf59 Missense_Mutation p.S216F 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 16 25151534 25151534 C T LCMT1 Missense_Mutation p.P124S 0.33 deleterious(0) benign(0.405) TCGA-FW-A3R5-06 16 25235776 25235776 G A AQP8 Missense_Mutation p.E161K 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 25251424 25251424 G A ZKSCAN2 Missense_Mutation p.H873Y 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 25251824 25251824 C T ZKSCAN2 Silent p.Q739Q 0.22 TCGA-FW-A3R5-06 16 25258636 25258636 G A ZKSCAN2 Missense_Mutation p.S294F 0.08 tolerated(0.13) benign(0.099) TCGA-FW-A3R5-06 16 2546536 2546536 C T RP11-20I23.1 Silent p.S129S 0.32 TCGA-FW-A3R5-06 16 2546846 2546846 C T RP11-20I23.1 Silent p.L233L 0.18 TCGA-FW-A3R5-06 16 26147203 26147203 C T HS3ST4 Silent p.I335I 0.31 TCGA-FW-A3R5-06 16 26147236 26147236 T A HS3ST4 Nonsense_Mutation p.Y346* 0.32 TCGA-FW-A3R5-06 16 26147540 26147540 C T HS3ST4 Nonsense_Mutation p.Q448* 0.25 TCGA-FW-A3R5-06 16 27078298 27078298 C T C16orf82 RNA 0.30 TCGA-FW-A3R5-06 16 27374045 27374045 C T IL4R Missense_Mutation p.P458S 0.18 tolerated(0.76) benign(0.007) TCGA-FW-A3R5-06 16 27374046 27374046 C T IL4R Missense_Mutation p.P458L 0.18 tolerated(0.38) benign(0.002) TCGA-FW-A3R5-06 16 27448833 27448833 G A IL21R Silent p.K59K 0.27 TCGA-FW-A3R5-06 16 27455990 27455990 G A IL21R Missense_Mutation p.G212E 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 27455991 27455991 G A IL21R Silent p.G212G 0.19 TCGA-FW-A3R5-06 16 27460569 27460569 C T IL21R Missense_Mutation p.P528S 0.22 tolerated(0.21) probably_damaging(0.992) TCGA-FW-A3R5-06 16 27506194 27506194 G A GTF3C1 Missense_Mutation p.P890S 0.15 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 16 27517295 27517295 G T GTF3C1 Silent p.S565S 0.36 TCGA-FW-A3R5-06 16 27517296 27517296 G A GTF3C1 Missense_Mutation p.S565F 0.36 deleterious(0.01) possibly_damaging(0.58) TCGA-FW-A3R5-06 16 27660021 27660021 C T KIAA0556 Missense_Mutation p.L169F 0.19 tolerated(0.25) benign(0.166) TCGA-FW-A3R5-06 16 27781201 27781201 C T KIAA0556 Missense_Mutation p.S1332F 0.32 tolerated(0.75) benign(0.03) TCGA-FW-A3R5-06 16 27789904 27789904 C T KIAA0556 Missense_Mutation p.P1604L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 27895874 27895874 G A GSG1L Silent p.F161F 0.21 TCGA-FW-A3R5-06 16 28118871 28118871 G A XPO6 Silent p.A823A 0.27 TCGA-FW-A3R5-06 16 2812786 2812786 C T SRRM2 Missense_Mutation p.R753C 0.24 unknown(0) TCGA-FW-A3R5-06 16 28328886 28328886 G A SBK1 Silent p.E58E 0.19 TCGA-FW-A3R5-06 16 28331753 28331753 C T SBK1 Silent p.F262F 0.33 TCGA-FW-A3R5-06 16 28354373 28354373 G A NPIPB6 Missense_Mutation p.S278F 0.25 tolerated_low_confidence(0.38) probably_damaging(0.975) TCGA-FW-A3R5-06 16 28508889 28508889 G A APOBR Missense_Mutation p.A843T 0.29 tolerated(0.08) possibly_damaging(0.682) TCGA-FW-A3R5-06 16 28513323 28513323 C T IL27 Missense_Mutation p.D146N 0.25 deleterious(0.01) possibly_damaging(0.482) TCGA-FW-A3R5-06 16 28603583 28603583 C T SULT1A2 Splice_Site p.X259_splice 0.17 TCGA-FW-A3R5-06 16 28617391 28617391 G A SULT1A1 Missense_Mutation p.P254L 0.19 deleterious(0) possibly_damaging(0.836) TCGA-FW-A3R5-06 16 28617510 28617510 G A SULT1A1 Silent p.S214S 0.17 TCGA-FW-A3R5-06 16 28618127 28618127 G A SULT1A1 Silent p.S183S 0.08 TCGA-FW-A3R5-06 16 28618371 28618371 C T SULT1A1 Missense_Mutation p.D134N 0.19 deleterious(0.01) possibly_damaging(0.6) TCGA-FW-A3R5-06 16 28619626 28619626 C T SULT1A1 Missense_Mutation p.D120N 0.19 deleterious(0) possibly_damaging(0.884) TCGA-FW-A3R5-06 16 28620128 28620128 C T SULT1A1 Missense_Mutation p.G17R 0.12 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 16 2880270 2880270 G A ZG16B Missense_Mutation p.E8K 0.38 tolerated(0.11) benign(0.096) TCGA-FW-A3R5-06 16 28841284 28841284 C T ATXN2L Silent p.I313I 0.18 TCGA-FW-A3R5-06 16 28843514 28843514 C T ATXN2L Intron 0.15 TCGA-FW-A3R5-06 16 28848076 28848076 C T ATXN2L 3'UTR 0.18 TCGA-FW-A3R5-06 16 28877316 28877316 C T SH2B1 Intron 0.19 TCGA-FW-A3R5-06 16 28944296 28944296 C T CD19 Silent p.S140S 0.18 TCGA-FW-A3R5-06 16 28944640 28944640 C T CD19 Silent p.T215T 0.33 TCGA-FW-A3R5-06 16 2903927 2903927 C T PRSS22 Missense_Mutation p.G219E 0.27 tolerated(0.55) benign(0.015) TCGA-FW-A3R5-06 16 2946512 2946512 C T FLYWCH2 Missense_Mutation p.S21F 0.14 deleterious(0) possibly_damaging(0.66) TCGA-FW-A3R5-06 16 29675707 29675707 G A SPN Missense_Mutation p.G220R 0.10 deleterious(0.01) benign(0.057) TCGA-FW-A3R5-06 16 29706093 29706093 C T QPRT Missense_Mutation p.P41L 0.20 tolerated(0.25) benign(0.053) TCGA-FW-A3R5-06 16 29755585 29755585 G A C16orf54 3'UTR 0.41 TCGA-FW-A3R5-06 16 29755651 29755651 C T C16orf54 Missense_Mutation p.E208K 0.16 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-FW-A3R5-06 16 29824855 29824855 C T PRRT2 Silent p.L160L 0.30 TCGA-FW-A3R5-06 16 29824999 29824999 C T PRRT2 Silent p.S208S 0.19 TCGA-FW-A3R5-06 16 29856018 29856018 C T MVP Silent p.G613G 0.30 TCGA-FW-A3R5-06 16 29856019 29856019 C T MVP Missense_Mutation p.P614S 0.31 tolerated(0.34) benign(0.008) TCGA-FW-A3R5-06 16 29856066 29856066 C T MVP Silent p.P629P 0.08 TCGA-FW-A3R5-06 16 2988351 2988351 C T FLYWCH1 Silent p.H647H 0.31 TCGA-FW-A3R5-06 16 29997796 29997796 C T TAOK2 Nonsense_Mutation p.Q735* 0.23 TCGA-FW-A3R5-06 16 29998372 29998372 C T TAOK2 Missense_Mutation p.P927S 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FW-A3R5-06 16 30012298 30012298 C T INO80E Silent p.S111S 0.21 TCGA-FW-A3R5-06 16 30016748 30016748 C T INO80E Silent p.I240I 0.29 TCGA-FW-A3R5-06 16 30018572 30018572 C T DOC2A Silent p.G192G 0.32 TCGA-FW-A3R5-06 16 30020383 30020383 G A DOC2A Missense_Mutation p.P154L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 30020409 30020409 C T DOC2A Silent p.T145T 0.16 TCGA-FW-A3R5-06 16 30035190 30035190 C T C16orf92 Silent p.I91I 0.10 TCGA-FW-A3R5-06 16 30035571 30035571 C T C16orf92 3'UTR 0.42 TCGA-FW-A3R5-06 16 30081507 30081507 C T ALDOA Missense_Mutation p.L411F 0.20 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 16 30094997 30094997 C T PPP4C Missense_Mutation p.L167F 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 30097955 30097955 T C TBX6 Silent p.E325E 0.20 TCGA-FW-A3R5-06 16 30100386 30100386 G A TBX6 Missense_Mutation p.R167C 0.09 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 16 30133195 30133195 G A MAPK3 Silent p.I101I 0.47 TCGA-FW-A3R5-06 16 30199825 30199825 G A CORO1A Silent p.E403E 0.36 TCGA-FW-A3R5-06 16 30387211 30387211 C T MYLPF Missense_Mutation p.T25I 0.15 deleterious(0) possibly_damaging(0.504) TCGA-FW-A3R5-06 16 30495221 30495221 G A ITGAL Missense_Mutation p.E266K 0.12 deleterious(0.01) benign(0.161) TCGA-FW-A3R5-06 16 30495438 30495438 G A ITGAL Missense_Mutation p.G287E 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 30507767 30507767 G A ITGAL Missense_Mutation p.G571E 0.09 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 16 30510707 30510707 G A ITGAL Missense_Mutation p.R681Q 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 16 30510708 30510708 G A ITGAL Silent p.R681R 0.07 TCGA-FW-A3R5-06 16 30531273 30531273 C T ITGAL Silent p.F1108F 0.10 TCGA-FW-A3R5-06 16 30532907 30532907 C T ITGAL Missense_Mutation p.S1145F 0.32 deleterious_low_confidence(0.01) benign(0.379) TCGA-FW-A3R5-06 16 30581396 30581396 G A ZNF688 Silent p.F224F 0.25 TCGA-FW-A3R5-06 16 3065685 3065685 G A CLDN6 Missense_Mutation p.S113F 0.26 tolerated(0.1) benign(0.008) TCGA-FW-A3R5-06 16 3065728 3065728 G A CLDN6 Missense_Mutation p.L99F 0.27 tolerated(0.14) possibly_damaging(0.673) TCGA-FW-A3R5-06 16 30724604 30724604 C T SRCAP Missense_Mutation p.R736C 0.23 unknown(0) TCGA-FW-A3R5-06 16 30724930 30724930 C T SRCAP Silent p.F797F 0.22 TCGA-FW-A3R5-06 16 30740440 30740440 C T SRCAP Missense_Mutation p.P1938S 0.28 probably_damaging(0.968) TCGA-FW-A3R5-06 16 30740710 30740710 C T SRCAP Missense_Mutation p.P1982S 0.30 possibly_damaging(0.901) TCGA-FW-A3R5-06 16 3077236 3077236 C T THOC6 Silent p.F255F 0.20 TCGA-FW-A3R5-06 16 30794044 30794044 G A ZNF629 Silent p.I535I 0.30 TCGA-FW-A3R5-06 16 3080783 3080783 C T CCDC64B Missense_Mutation p.E177K 0.25 deleterious(0.01) possibly_damaging(0.858) TCGA-FW-A3R5-06 16 30982993 30982993 C T SETD1A Missense_Mutation p.P1104L 0.24 unknown(0) TCGA-FW-A3R5-06 16 31045633 31045633 C T STX4 Silent p.P73P 0.35 TCGA-FW-A3R5-06 16 3108551 3108551 G A MMP25 Missense_Mutation p.G433D 0.32 tolerated(0.88) probably_damaging(0.959) TCGA-FW-A3R5-06 16 31131550 31131550 C T KAT8 Silent p.G85G 0.27 TCGA-FW-A3R5-06 16 31144657 31144657 G A PRSS8 Silent p.V52V 0.12 TCGA-FW-A3R5-06 16 31150654 31150654 C T PRSS36 Silent p.E791E 0.12 TCGA-FW-A3R5-06 16 31155072 31155072 C T PRSS36 Silent p.R269R 0.21 TCGA-FW-A3R5-06 16 31155153 31155153 G A PRSS36 Silent p.D242D 0.10 TCGA-FW-A3R5-06 16 31159911 31159911 G A PRSS36 Missense_Mutation p.R120C 0.33 tolerated(0.05) benign(0.082) TCGA-FW-A3R5-06 16 3119049 3119049 C T IL32 Missense_Mutation p.S87F 0.17 tolerated(0.05) possibly_damaging(0.827) TCGA-FW-A3R5-06 16 3119069 3119069 G A IL32 Missense_Mutation p.D94N 0.29 tolerated(0.26) possibly_damaging(0.763) TCGA-FW-A3R5-06 16 3119116 3119116 G A IL32 Missense_Mutation p.M109I 0.28 tolerated(0.06) benign(0.346) TCGA-FW-A3R5-06 16 3119355 3119355 G A IL32 Silent p.%3D 0.10 TCGA-FW-A3R5-06 16 31230642 31230642 G A TRIM72 Silent p.G173G 0.19 TCGA-FW-A3R5-06 16 31232216 31232216 G A TRIM72 Splice_Site p.X240_splice 0.28 TCGA-FW-A3R5-06 16 31235609 31235609 G A TRIM72 Missense_Mutation p.E323K 0.28 tolerated(0.17) benign(0.138) TCGA-FW-A3R5-06 16 31282318 31282318 C T ITGAM Silent p.G157G 0.22 TCGA-FW-A3R5-06 16 31284752 31284752 G A ITGAM Silent p.T257T 0.40 TCGA-FW-A3R5-06 16 31332622 31332622 G A ITGAM Missense_Mutation p.G591S 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 31332892 31332892 G A ITGAM Missense_Mutation p.G650E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 31341692 31341692 G A ITGAM Missense_Mutation p.E1043K 0.30 tolerated(0.11) benign(0.01) TCGA-FW-A3R5-06 16 31341840 31341840 C T ITGAM Missense_Mutation p.L1065F 0.19 deleterious(0.02) benign(0.315) TCGA-FW-A3R5-06 16 31342524 31342524 C T ITGAM Silent p.P1106P 0.39 TCGA-FW-A3R5-06 16 31342525 31342525 C T ITGAM Silent p.L1107L 0.37 TCGA-FW-A3R5-06 16 31374055 31374055 C T ITGAX Missense_Mutation p.A447V 0.23 deleterious(0.03) benign(0.104) TCGA-FW-A3R5-06 16 31374056 31374056 C T ITGAX Silent p.A447A 0.23 TCGA-FW-A3R5-06 16 31374337 31374337 C T ITGAX Missense_Mutation p.P481S 0.15 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 16 31374539 31374539 G A ITGAX Nonsense_Mutation p.W518* 0.35 TCGA-FW-A3R5-06 16 31374540 31374540 G A ITGAX Missense_Mutation p.G519S 0.36 tolerated(0.16) benign(0.077) TCGA-FW-A3R5-06 16 3139136 3139136 G A ZSCAN10 Silent p.L712L 0.31 TCGA-FW-A3R5-06 16 31391694 31391694 C T ITGAX Silent p.V1056V 0.23 TCGA-FW-A3R5-06 16 3139548 3139548 C T ZSCAN10 Silent p.T574T 0.23 TCGA-FW-A3R5-06 16 31404690 31404690 C T ITGAD Silent p.F3F 0.29 TCGA-FW-A3R5-06 16 31405603 31405603 G A ITGAD Silent p.T26T 0.23 TCGA-FW-A3R5-06 16 314141 314141 C T ITFG3 Missense_Mutation p.L439F 0.17 tolerated(0.26) benign(0.072) TCGA-FW-A3R5-06 16 3142167 3142167 G A ZSCAN10 Nonsense_Mutation p.R128* 0.25 TCGA-FW-A3R5-06 16 31421725 31421725 T C ITGAD Missense_Mutation p.F365L 0.34 tolerated(0.35) benign(0) TCGA-FW-A3R5-06 16 31422419 31422419 C T ITGAD Missense_Mutation p.S460F 0.14 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 16 31422420 31422420 C T ITGAD Silent p.S460S 0.15 TCGA-FW-A3R5-06 16 31424182 31424182 C T ITGAD Silent p.S577S 0.36 TCGA-FW-A3R5-06 16 31424183 31424183 C T ITGAD Missense_Mutation p.P578S 0.36 tolerated(0.31) benign(0.01) TCGA-FW-A3R5-06 16 31434475 31434475 G A ITGAD Missense_Mutation p.D941N 0.20 tolerated(0.06) benign(0.354) TCGA-FW-A3R5-06 16 31434773 31434773 C T ITGAD Missense_Mutation p.P987L 0.22 tolerated(0.12) probably_damaging(0.924) TCGA-FW-A3R5-06 16 31439177 31439177 G A COX6A2 Missense_Mutation p.P71L 0.14 deleterious(0.02) possibly_damaging(0.575) TCGA-FW-A3R5-06 16 31475943 31475943 C T ARMC5 Silent p.S533S 0.42 TCGA-FW-A3R5-06 16 31477646 31477646 C T ARMC5 Silent p.P748P 0.29 TCGA-FW-A3R5-06 16 31487875 31487875 G A TGFB1I1 Missense_Mutation p.G321E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 31488639 31488639 C T TGFB1I1 Silent p.F376F 0.38 TCGA-FW-A3R5-06 16 31494449 31494449 C T SLC5A2 5'UTR 0.10 TCGA-FW-A3R5-06 16 31497190 31497190 C T SLC5A2 Silent p.F148F 0.19 TCGA-FW-A3R5-06 16 31498855 31498855 C T SLC5A2 Silent p.F220F 0.24 TCGA-FW-A3R5-06 16 31501384 31501384 G A C16orf58 3'UTR 0.33 TCGA-FW-A3R5-06 16 31539877 31539877 G A AHSP Silent p.G58G 0.17 TCGA-FW-A3R5-06 16 31539891 31539891 G A AHSP Missense_Mutation p.R63Q 0.41 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 16 32264999 32264999 C T TP53TG3D Missense_Mutation p.R109W 0.16 tolerated_low_confidence(0.1) benign(0) TCGA-FW-A3R5-06 16 3255061 3255061 C T OR1F1 Missense_Mutation p.T272I 0.21 tolerated(0.55) benign(0.02) TCGA-FW-A3R5-06 16 3273754 3273754 G A ZNF200 3'UTR 0.22 TCGA-FW-A3R5-06 16 3274129 3274129 G A ZNF200 Silent p.F317F 0.59 TCGA-FW-A3R5-06 16 3274282 3274282 G A ZNF200 Silent p.Y266Y 0.38 TCGA-FW-A3R5-06 16 3274511 3274511 G A ZNF200 Missense_Mutation p.S190F 0.35 tolerated(0.13) benign(0.006) TCGA-FW-A3R5-06 16 32890777 32890777 G A SLC6A10P RNA 0.28 TCGA-FW-A3R5-06 16 32891041 32891041 C T SLC6A10P Intron 0.24 TCGA-FW-A3R5-06 16 32891829 32891829 C T SLC6A10P RNA 0.24 TCGA-FW-A3R5-06 16 3293298 3293298 G A MEFV Missense_Mutation p.S730F 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 33020498 33020498 G A IGHV3OR16-8 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.529) TCGA-FW-A3R5-06 16 3304454 3304454 C T MEFV Missense_Mutation p.R205K 0.27 deleterious(0.03) possibly_damaging(0.725) TCGA-FW-A3R5-06 16 332780 332780 G A ARHGDIG Nonsense_Mutation p.W215* 0.29 TCGA-FW-A3R5-06 16 335186 335186 G A PDIA2 Missense_Mutation p.E261K 0.10 deleterious(0.01) possibly_damaging(0.61) TCGA-FW-A3R5-06 16 33965525 33965525 C T RNA5-8SP2 RNA 0.16 TCGA-FW-A3R5-06 16 3454458 3454458 C T ZNF174 Silent p.L145L 0.35 TCGA-FW-A3R5-06 16 3454615 3454615 C T ZNF174 Missense_Mutation p.L198F 0.20 tolerated(0.28) benign(0.001) TCGA-FW-A3R5-06 16 3486680 3486680 G A ZNF597 Missense_Mutation p.P340L 0.40 tolerated(0.12) probably_damaging(0.999) TCGA-FW-A3R5-06 16 3486894 3486894 C T ZNF597 Missense_Mutation p.E269K 0.18 tolerated(0.33) benign(0.126) TCGA-FW-A3R5-06 16 3487274 3487274 G A ZNF597 Missense_Mutation p.S142F 0.19 tolerated(0.09) possibly_damaging(0.897) TCGA-FW-A3R5-06 16 3533403 3533403 C T NAA60 Silent p.T126T 0.30 TCGA-FW-A3R5-06 16 354414 354414 G A AXIN1 Missense_Mutation p.R382C 0.14 tolerated(0.06) possibly_damaging(0.836) TCGA-FW-A3R5-06 16 3544772 3544772 C T C16orf90 Missense_Mutation p.G51E 0.40 deleterious_low_confidence(0) benign(0.155) TCGA-FW-A3R5-06 16 3607626 3607626 G A NLRC3 Silent p.S736S 0.21 TCGA-FW-A3R5-06 16 3614464 3614464 G A NLRC3 Silent p.F205F 0.22 TCGA-FW-A3R5-06 16 3614674 3614674 G A NLRC3 Silent p.A135A 0.19 TCGA-FW-A3R5-06 16 3633209 3633209 G A SLX4 Missense_Mutation p.S1681L 0.37 tolerated(0.12) benign(0.011) TCGA-FW-A3R5-06 16 3639790 3639790 G A SLX4 Silent p.A1283A 0.33 TCGA-FW-A3R5-06 16 3640889 3640889 G A SLX4 Missense_Mutation p.A917V 0.19 tolerated(0.31) benign(0.008) TCGA-FW-A3R5-06 16 3645678 3645678 G A SLX4 Silent p.P647P 0.26 TCGA-FW-A3R5-06 16 3725373 3725373 G A TRAP1 Silent p.F280F 0.12 TCGA-FW-A3R5-06 16 3777936 3777936 G A CREBBP Missense_Mutation p.P2371L 0.11 unknown(0) TCGA-FW-A3R5-06 16 3790455 3790455 G A CREBBP Nonsense_Mutation p.R1360* 0.10 TCGA-FW-A3R5-06 16 3795352 3795352 G A CREBBP Silent p.F1280F 0.31 TCGA-FW-A3R5-06 16 4242186 4242186 C T SRL Missense_Mutation p.E464K 0.36 tolerated_low_confidence(0.07) probably_damaging(0.923) TCGA-FW-A3R5-06 16 4245738 4245738 C T SRL Silent p.K142K 0.14 TCGA-FW-A3R5-06 16 4247875 4247875 G A SRL Missense_Mutation p.P101S 0.39 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 16 426755 426755 G A TMEM8A Silent p.S231S 0.12 TCGA-FW-A3R5-06 16 427062 427062 G A TMEM8A Missense_Mutation p.L204F 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 16 4311934 4311934 G A TFAP4 Missense_Mutation p.S124F 0.29 deleterious(0.02) probably_damaging(0.929) TCGA-FW-A3R5-06 16 4491432 4491432 C T DNAJA3 Silent p.F162F 0.09 TCGA-FW-A3R5-06 16 461033 461033 C T DECR2 Silent p.L206L 0.24 TCGA-FW-A3R5-06 16 46716030 46716030 G A VPS35 Missense_Mutation p.R54W 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-FW-A3R5-06 16 46717501 46717501 G A VPS35 Silent p.S7S 0.14 TCGA-FW-A3R5-06 16 46746655 46746655 G A MYLK3 Silent p.F673F 0.23 TCGA-FW-A3R5-06 16 46755035 46755035 C T MYLK3 Missense_Mutation p.R662K 0.10 tolerated(0.08) probably_damaging(0.972) TCGA-FW-A3R5-06 16 46771680 46771680 G A MYLK3 Missense_Mutation p.P315L 0.37 tolerated(0.76) benign(0.006) TCGA-FW-A3R5-06 16 46771889 46771889 C T MYLK3 Silent p.K245K 0.08 TCGA-FW-A3R5-06 16 46772028 46772028 C T MYLK3 Missense_Mutation p.G199E 0.23 tolerated(0.24) benign(0.263) TCGA-FW-A3R5-06 16 46781659 46781659 C T MYLK3 Silent p.R149R 0.19 TCGA-FW-A3R5-06 16 46782126 46782126 G A MYLK3 5'UTR 0.23 TCGA-FW-A3R5-06 16 46931640 46931640 C T GPT2 Silent p.F108F 0.20 TCGA-FW-A3R5-06 16 46943652 46943652 C T GPT2 Silent p.I211I 0.22 TCGA-FW-A3R5-06 16 47117421 47117421 G A NETO2 Missense_Mutation p.T430I 0.24 deleterious_low_confidence(0.02) benign(0.028) TCGA-FW-A3R5-06 16 47628107 47628107 C T PHKB Missense_Mutation p.L396F 0.10 deleterious(0.01) possibly_damaging(0.878) TCGA-FW-A3R5-06 16 4776692 4776692 G A ANKS3 Silent p.F153F 0.36 TCGA-FW-A3R5-06 16 4787833 4787833 C T C16orf71 Silent p.F54F 0.29 TCGA-FW-A3R5-06 16 4797517 4797517 G A C16orf71 Missense_Mutation p.G485E 0.23 tolerated(0.77) benign(0.007) TCGA-FW-A3R5-06 16 48117519 48117519 G A ABCC12 3'UTR 0.37 TCGA-FW-A3R5-06 16 48117520 48117520 G A ABCC12 3'UTR 0.37 TCGA-FW-A3R5-06 16 48117823 48117823 C T ABCC12 Silent p.G1330G 0.23 TCGA-FW-A3R5-06 16 48119606 48119606 G A ABCC12 Silent p.L1242L 0.17 TCGA-FW-A3R5-06 16 48139140 48139140 G A ABCC12 Silent p.F861F 0.31 TCGA-FW-A3R5-06 16 48145489 48145489 C T ABCC12 Missense_Mutation p.V737I 0.20 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 16 48164723 48164723 C T ABCC12 Silent p.A404A 0.34 TCGA-FW-A3R5-06 16 48167728 48167728 C T ABCC12 Missense_Mutation p.R333K 0.27 tolerated(0.33) benign(0.009) TCGA-FW-A3R5-06 16 48201105 48201105 C T ABCC11 3'UTR 0.31 TCGA-FW-A3R5-06 16 48201473 48201473 G A ABCC11 Silent p.L1330L 0.29 TCGA-FW-A3R5-06 16 48248804 48248804 G A ABCC11 Silent p.L412L 0.33 TCGA-FW-A3R5-06 16 48258241 48258241 G A ABCC11 Silent p.F165F 0.32 TCGA-FW-A3R5-06 16 48261760 48261760 G A ABCC11 Missense_Mutation p.P118S 0.25 tolerated(0.14) possibly_damaging(0.831) TCGA-FW-A3R5-06 16 4827818 4827818 C T SEPT12 Missense_Mutation p.D353N 0.38 tolerated_low_confidence(0.44) benign(0.004) TCGA-FW-A3R5-06 16 4827821 4827821 C T SEPT12 Missense_Mutation p.D352N 0.38 deleterious_low_confidence(0.01) benign(0.159) TCGA-FW-A3R5-06 16 4833673 4833673 C T SEPT12 Missense_Mutation p.E203K 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 4834032 4834032 C T SEPT12 Missense_Mutation p.E138K 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 16 4861673 4861673 G A GLYR1 Silent p.I471I 0.18 TCGA-FW-A3R5-06 16 4881996 4881996 G A GLYR1 Missense_Mutation p.P174L 0.29 tolerated(0.06) benign(0.005) TCGA-FW-A3R5-06 16 4909091 4909091 C T UBN1 Silent p.T166T 0.11 TCGA-FW-A3R5-06 16 4933850 4933850 C T PPL Silent p.A1602A 0.33 TCGA-FW-A3R5-06 16 49407996 49407996 C T C16orf78 Missense_Mutation p.P49L 0.22 tolerated(0.72) benign(0) TCGA-FW-A3R5-06 16 49411641 49411641 G A C16orf78 Splice_Site p.X51_splice 0.37 TCGA-FW-A3R5-06 16 49411662 49411662 G C C16orf78 Silent p.V57V 0.36 TCGA-FW-A3R5-06 16 49433061 49433061 G A C16orf78 Missense_Mutation p.E224K 0.12 deleterious(0) benign(0.092) TCGA-FW-A3R5-06 16 4945269 4945269 C T PPL Missense_Mutation p.G412E 0.22 tolerated(0.22) benign(0.097) TCGA-FW-A3R5-06 16 4947742 4947742 C T PPL Nonsense_Mutation p.W302* 0.37 TCGA-FW-A3R5-06 16 4947743 4947743 C T PPL Nonsense_Mutation p.W302* 0.35 TCGA-FW-A3R5-06 16 4950860 4950860 C T PPL Missense_Mutation p.E193K 0.21 tolerated(0.28) benign(0.102) TCGA-FW-A3R5-06 16 49557646 49557646 G A ZNF423 Silent p.F1238F 0.21 TCGA-FW-A3R5-06 16 49670531 49670531 C T ZNF423 Silent p.G844G 0.26 TCGA-FW-A3R5-06 16 49671965 49671965 G A ZNF423 Silent p.S366S 0.12 TCGA-FW-A3R5-06 16 49823408 49823408 C T ZNF423 Silent p.V22V 0.09 TCGA-FW-A3R5-06 16 49823439 49823439 G A ZNF423 Missense_Mutation p.S12L 0.41 deleterious_low_confidence(0.02) benign(0.01) TCGA-FW-A3R5-06 16 50324451 50324451 C T ADCY7 Silent p.V85V 0.35 TCGA-FW-A3R5-06 16 50332845 50332845 G A ADCY7 Missense_Mutation p.G327S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 50388763 50388763 G A BRD7 Missense_Mutation p.P110L 0.19 deleterious(0) possibly_damaging(0.653) TCGA-FW-A3R5-06 16 5040786 5040786 G A SEC14L5 Missense_Mutation p.D122N 0.20 tolerated(0.25) benign(0.031) TCGA-FW-A3R5-06 16 5041989 5041989 C T SEC14L5 Missense_Mutation p.R209C 0.45 tolerated(0.05) benign(0.001) TCGA-FW-A3R5-06 16 5047039 5047039 G A SEC14L5 Missense_Mutation p.D322N 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 5058617 5058617 C T SEC14L5 Missense_Mutation p.P590S 0.26 tolerated(0.32) benign(0.039) TCGA-FW-A3R5-06 16 50667106 50667106 C T NKD1 Missense_Mutation p.S276F 0.32 deleterious(0) possibly_damaging(0.82) TCGA-FW-A3R5-06 16 50667441 50667441 C T NKD1 Missense_Mutation p.P388S 0.14 tolerated(0.06) possibly_damaging(0.544) TCGA-FW-A3R5-06 16 50707809 50707809 C T SNX20 Missense_Mutation p.M153I 0.23 tolerated(0.59) benign(0.017) TCGA-FW-A3R5-06 16 50707821 50707821 G A SNX20 Silent p.F149F 0.14 TCGA-FW-A3R5-06 16 50707846 50707846 G A SNX20 Missense_Mutation p.P141L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 50733414 50733414 C T NOD2 Missense_Mutation p.S30L 0.34 deleterious(0.01) benign(0.075) TCGA-FW-A3R5-06 16 50733542 50733542 G A NOD2 Missense_Mutation p.G73S 0.31 tolerated(0.64) benign(0.052) TCGA-FW-A3R5-06 16 50733833 50733833 A T NOD2 Missense_Mutation p.I170F 0.16 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 16 50741774 50741774 G A NOD2 Silent p.R183R 0.30 TCGA-FW-A3R5-06 16 50744591 50744591 C T NOD2 Silent p.L257L 0.15 TCGA-FW-A3R5-06 16 50744969 50744969 G A NOD2 Missense_Mutation p.E383K 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 50750524 50750524 G A NOD2 Missense_Mutation p.R830Q 0.39 tolerated(0.28) benign(0.019) TCGA-FW-A3R5-06 16 50756563 50756563 G A NOD2 Silent p.G915G 0.32 TCGA-FW-A3R5-06 16 50757272 50757272 G A NOD2 Silent p.K953K 0.18 TCGA-FW-A3R5-06 16 50759407 50759407 G A NOD2 Missense_Mutation p.E964K 0.23 tolerated(0.82) possibly_damaging(0.845) TCGA-FW-A3R5-06 16 50783766 50783766 C T CYLD Missense_Mutation p.R53C 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 16 50813813 50813813 C T CYLD Missense_Mutation p.P459L 0.16 tolerated(0.06) benign(0.02) TCGA-FW-A3R5-06 16 51171299 51171299 G A SALL1 Silent p.F1233F 0.31 TCGA-FW-A3R5-06 16 51172764 51172764 G A SALL1 Silent p.L1123L 0.20 TCGA-FW-A3R5-06 16 51173332 51173332 C T SALL1 Missense_Mutation p.S934N 0.11 deleterious(0.03) possibly_damaging(0.603) TCGA-FW-A3R5-06 16 51173447 51173447 C T SALL1 Missense_Mutation p.D896N 0.24 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 16 51174230 51174230 G A SALL1 Missense_Mutation p.P635S 0.33 tolerated(0.73) benign(0.002) TCGA-FW-A3R5-06 16 51174243 51174243 G A SALL1 Silent p.V630V 0.25 TCGA-FW-A3R5-06 16 51174260 51174260 C T SALL1 Missense_Mutation p.E625K 0.17 tolerated(0.48) benign(0.047) TCGA-FW-A3R5-06 16 51174630 51174630 C T SALL1 Silent p.E501E 0.25 TCGA-FW-A3R5-06 16 51174768 51174768 C T SALL1 Silent p.A455A 0.34 TCGA-FW-A3R5-06 16 51174906 51174906 G A SALL1 Silent p.I409I 0.25 TCGA-FW-A3R5-06 16 51174964 51174964 G A SALL1 Missense_Mutation p.P390L 0.27 deleterious(0.03) possibly_damaging(0.71) TCGA-FW-A3R5-06 16 51175409 51175409 G A SALL1 Missense_Mutation p.H242Y 0.16 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 16 51175977 51175977 G A SALL1 Silent p.F52F 0.26 TCGA-FW-A3R5-06 16 5125427 5125427 C T ALG1 Silent p.F143F 0.26 TCGA-FW-A3R5-06 16 521377 521377 C T RAB11FIP3 Silent p.F297F 0.41 TCGA-FW-A3R5-06 16 52473641 52473641 C T TOX3 Silent p.S409S 0.31 TCGA-FW-A3R5-06 16 52473859 52473859 C T TOX3 Missense_Mutation p.A337T 0.23 tolerated(0.3) probably_damaging(0.98) TCGA-FW-A3R5-06 16 52502448 52502448 C T TOX3 Silent p.A42A 0.21 TCGA-FW-A3R5-06 16 53190843 53190843 T G CHD9 Missense_Mutation p.I281R 0.30 possibly_damaging(0.8) TCGA-FW-A3R5-06 16 53340208 53340208 C T CHD9 Nonsense_Mutation p.Q2227* 0.33 TCGA-FW-A3R5-06 16 53679563 53679563 G A RPGRIP1L Missense_Mutation p.S886L 0.25 deleterious(0.02) probably_damaging(0.941) TCGA-FW-A3R5-06 16 53686563 53686563 G A RPGRIP1L Missense_Mutation p.T679I 0.15 deleterious(0) possibly_damaging(0.565) TCGA-FW-A3R5-06 16 53721836 53721836 G A RPGRIP1L Missense_Mutation p.P191S 0.09 tolerated(0.61) benign(0.005) TCGA-FW-A3R5-06 16 55523612 55523612 C T MMP2 Silent p.P352P 0.30 TCGA-FW-A3R5-06 16 55525834 55525834 C T MMP2 Silent p.S434S 0.30 TCGA-FW-A3R5-06 16 55539335 55539335 C T MMP2 Missense_Mutation p.S655F 0.38 tolerated(0.48) benign(0.126) TCGA-FW-A3R5-06 16 55690819 55690819 C T SLC6A2 Silent p.G71G 0.21 TCGA-FW-A3R5-06 16 55705875 55705875 C T SLC6A2 Silent p.I144I 0.30 TCGA-FW-A3R5-06 16 55733486 55733486 G A SLC6A2 Missense_Mutation p.D504N 0.10 deleterious(0.04) benign(0.176) TCGA-FW-A3R5-06 16 55736349 55736349 C T SLC6A2 Intron 0.52 TCGA-FW-A3R5-06 16 55862776 55862776 G A CES1 Missense_Mutation p.P55S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 16 55880415 55880415 G A CES5A Missense_Mutation p.S588F 0.25 tolerated_low_confidence(0.17) possibly_damaging(0.485) TCGA-FW-A3R5-06 16 55907804 55907804 C T CES5A Silent p.T102T 0.35 TCGA-FW-A3R5-06 16 55909079 55909079 G A CES5A Intron 0.19 TCGA-FW-A3R5-06 16 56480599 56480599 G A NUDT21 Missense_Mutation p.P107L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 56481894 56481894 G A NUDT21 Missense_Mutation p.L42F 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-FW-A3R5-06 16 56519580 56519580 G A BBS2 Missense_Mutation p.R661C 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 56651395 56651395 G A MT1L RNA 0.33 TCGA-FW-A3R5-06 16 56670357 56670357 C T MT1M 3'Flank 0.12 TCGA-FW-A3R5-06 16 56672628 56672628 C T MT1A 5'UTR 0.27 TCGA-FW-A3R5-06 16 56693046 56693046 G A MT1F Silent p.G52G 0.06 TCGA-FW-A3R5-06 16 56899349 56899349 G A SLC12A3 Missense_Mutation p.E68K 0.25 deleterious(0) possibly_damaging(0.691) TCGA-FW-A3R5-06 16 56917978 56917978 C T SLC12A3 Nonsense_Mutation p.Q563* 0.20 TCGA-FW-A3R5-06 16 56995861 56995861 C T CETP 5'UTR 0.23 TCGA-FW-A3R5-06 16 56996002 56996002 C T CETP Silent p.L37L 0.21 TCGA-FW-A3R5-06 16 57003538 57003538 G A CETP Silent p.Q128Q 0.11 TCGA-FW-A3R5-06 16 57009030 57009030 G A CETP Nonsense_Mutation p.W316* 0.28 TCGA-FW-A3R5-06 16 57016149 57016149 C T CETP Missense_Mutation p.R441W 0.22 tolerated(0.12) benign(0.188) TCGA-FW-A3R5-06 16 57017604 57017604 G A CETP 3'UTR 0.28 TCGA-FW-A3R5-06 16 57060874 57060874 C T NLRC5 Silent p.P673P 0.34 TCGA-FW-A3R5-06 16 57447836 57447836 C T CCL17 5'UTR 0.23 TCGA-FW-A3R5-06 16 57494634 57494634 C T COQ9 3'UTR 0.25 TCGA-FW-A3R5-06 16 57507918 57507918 G A DOK4 Silent p.F211F 0.13 TCGA-FW-A3R5-06 16 57546563 57546563 G A CCDC102A 3'UTR 0.30 TCGA-FW-A3R5-06 16 57552561 57552561 C T CCDC102A Silent p.R338R 0.20 TCGA-FW-A3R5-06 16 57604336 57604336 C T GPR114 Missense_Mutation p.P366L 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 16 57685473 57685473 C T GPR56 Silent p.S142S 0.13 TCGA-FW-A3R5-06 16 57713104 57713104 C T GPR97 Silent p.L170L 0.19 TCGA-FW-A3R5-06 16 57714214 57714214 G A GPR97 Silent p.T235T 0.17 TCGA-FW-A3R5-06 16 57719769 57719769 G A GPR97 Missense_Mutation p.G491R 0.26 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 16 57719770 57719770 G A GPR97 Missense_Mutation p.G491E 0.25 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 16 57732829 57732829 G A CCDC135 Missense_Mutation p.E91K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 16 57734081 57734081 C T CCDC135 Missense_Mutation p.P135S 0.31 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 16 57757027 57757027 C T CCDC135 Missense_Mutation p.P508S 0.17 tolerated(0.94) benign(0.02) TCGA-FW-A3R5-06 16 57761270 57761270 C T CCDC135 Silent p.S715S 0.33 TCGA-FW-A3R5-06 16 57762304 57762304 G A CCDC135 Silent p.E733E 0.30 TCGA-FW-A3R5-06 16 57917981 57917981 G A CNGB1 3'UTR 0.39 TCGA-FW-A3R5-06 16 57938654 57938654 G A CNGB1 Missense_Mutation p.S873F 0.10 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 16 57945727 57945727 G A CNGB1 Missense_Mutation p.L808F 0.25 deleterious(0.04) benign(0.046) TCGA-FW-A3R5-06 16 57950064 57950064 C T CNGB1 Missense_Mutation p.R729Q 0.31 deleterious(0) possibly_damaging(0.534) TCGA-FW-A3R5-06 16 58019364 58019364 C T TEPP Silent p.P249P 0.33 TCGA-FW-A3R5-06 16 58044008 58044008 C T USB1 Silent p.S147S 0.11 TCGA-FW-A3R5-06 16 58074568 58074568 C T MMP15 Silent p.P292P 0.28 TCGA-FW-A3R5-06 16 58077194 58077194 C T MMP15 Missense_Mutation p.P462S 0.23 deleterious(0.01) possibly_damaging(0.611) TCGA-FW-A3R5-06 16 58078924 58078924 C T MMP15 Silent p.F528F 0.26 TCGA-FW-A3R5-06 16 58312481 58312481 C T CCDC113 Silent p.I329I 0.28 TCGA-FW-A3R5-06 16 58314292 58314292 C T PRSS54 Missense_Mutation p.E342K 0.25 deleterious(0.05) benign(0.149) TCGA-FW-A3R5-06 16 58538273 58538273 C T NDRG4 Missense_Mutation p.P139S 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-FW-A3R5-06 16 58583660 58583660 T G CNOT1 Missense_Mutation p.N1162T 0.26 tolerated(0.44) benign(0.001) TCGA-FW-A3R5-06 16 58713945 58713945 G A SLC38A7 Missense_Mutation p.P29L 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 16 58750625 58750625 G A GOT2 Silent p.I265I 0.22 TCGA-FW-A3R5-06 16 58757655 58757655 G A GOT2 Missense_Mutation p.R81C 0.17 deleterious(0) probably_damaging(0.92) TCGA-FW-A3R5-06 16 598008 598008 C T CAPN15 Silent p.S390S 0.27 TCGA-FW-A3R5-06 16 601380 601380 C T CAPN15 Silent p.P715P 0.32 TCGA-FW-A3R5-06 16 601394 601394 C T CAPN15 Missense_Mutation p.S720F 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 61687488 61687488 C T CDH8 3'UTR 0.25 TCGA-FW-A3R5-06 16 61687892 61687892 C T CDH8 Missense_Mutation p.E674K 0.30 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 16 61747817 61747817 C T CDH8 Missense_Mutation p.G528R 0.56 tolerated(0.07) probably_damaging(0.987) TCGA-FW-A3R5-06 16 61760899 61760899 G A CDH8 Intron 0.37 TCGA-FW-A3R5-06 16 61761051 61761051 C T CDH8 Missense_Mutation p.E495K 0.31 deleterious(0.03) possibly_damaging(0.757) TCGA-FW-A3R5-06 16 62055312 62055312 C A CDH8 5'UTR 0.23 TCGA-FW-A3R5-06 16 62055438 62055438 G A CDH8 5'UTR 0.36 TCGA-FW-A3R5-06 16 62055465 62055465 C T CDH8 5'UTR 0.33 TCGA-FW-A3R5-06 16 628806 628806 C T PIGQ Missense_Mutation p.P364L 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-FW-A3R5-06 16 633625 633625 C T PIGQ Silent p.V758V 0.31 TCGA-FW-A3R5-06 16 64981565 64981565 G A CDH11 Missense_Mutation p.R778C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 16 64981737 64981737 G A CDH11 Silent p.F720F 0.30 TCGA-FW-A3R5-06 16 64984868 64984868 C T CDH11 Missense_Mutation p.D566N 0.16 tolerated(0.33) benign(0.172) TCGA-FW-A3R5-06 16 65016033 65016033 C T CDH11 Missense_Mutation p.E391K 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 16 65016088 65016088 G A CDH11 Silent p.I372I 0.24 TCGA-FW-A3R5-06 16 65345360 65345360 G A LINC00922 RNA 0.26 TCGA-FW-A3R5-06 16 66423280 66423280 G A CDH5 Silent p.T212T 0.30 TCGA-FW-A3R5-06 16 66426077 66426077 C T CDH5 Silent p.I336I 0.22 TCGA-FW-A3R5-06 16 66434820 66434820 G A CDH5 Missense_Mutation p.E580K 0.19 tolerated(0.27) benign(0.296) TCGA-FW-A3R5-06 16 66436970 66436970 C T CDH5 Silent p.S751S 0.25 TCGA-FW-A3R5-06 16 66599833 66599833 C T CKLF Silent p.A126A 0.21 TCGA-FW-A3R5-06 16 66887504 66887504 G A CA7 3'UTR 0.20 TCGA-FW-A3R5-06 16 66919186 66919186 C T PDP2 Silent p.I333I 0.11 TCGA-FW-A3R5-06 16 66944318 66944318 G A CDH16 Missense_Mutation p.P671L 0.24 tolerated(0.12) benign(0.027) TCGA-FW-A3R5-06 16 66947101 66947101 C T CDH16 Silent p.E329E 0.09 TCGA-FW-A3R5-06 16 66955899 66955899 C T RRAD 3'UTR 0.50 TCGA-FW-A3R5-06 16 66969266 66969266 C T CES2 5'UTR 0.25 TCGA-FW-A3R5-06 16 66969267 66969267 C T CES2 5'UTR 0.23 TCGA-FW-A3R5-06 16 66975410 66975410 C T CES2 Missense_Mutation p.P370L 0.29 tolerated(0.3) benign(0.007) TCGA-FW-A3R5-06 16 66998585 66998585 C T CES3 Silent p.I258I 0.22 TCGA-FW-A3R5-06 16 67007024 67007024 C T CES3 3'UTR 0.40 TCGA-FW-A3R5-06 16 67221470 67221470 C T EXOC3L1 Missense_Mutation p.R233Q 0.17 tolerated(0.08) benign(0.375) TCGA-FW-A3R5-06 16 67223019 67223019 G A EXOC3L1 Silent p.A37A 0.26 TCGA-FW-A3R5-06 16 67223077 67223077 T C EXOC3L1 Missense_Mutation p.E18G 0.47 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 16 67290926 67290926 C T SLC9A5 Silent p.L415L 0.32 TCGA-FW-A3R5-06 16 67304727 67304727 G A SLC9A5 Missense_Mutation p.G769R 0.24 deleterious(0.01) possibly_damaging(0.796) TCGA-FW-A3R5-06 16 67314090 67314090 C T PLEKHG4 Missense_Mutation p.P48L 0.10 tolerated_low_confidence(0.12) benign(0.002) TCGA-FW-A3R5-06 16 67333348 67333348 G A KCTD19 Silent p.L302L 0.28 TCGA-FW-A3R5-06 16 67354558 67354558 G A KCTD19 Silent p.S78S 0.08 TCGA-FW-A3R5-06 16 67380159 67380159 G A LRRC36 Missense_Mutation p.G67R 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 67380160 67380160 G A LRRC36 Missense_Mutation p.G67E 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 67424131 67424131 G A TPPP3 Silent p.G159G 0.16 TCGA-FW-A3R5-06 16 67429105 67429105 G A ZDHHC1 Missense_Mutation p.P344S 0.40 tolerated(0.16) benign(0.026) TCGA-FW-A3R5-06 16 67440214 67440214 G A ZDHHC1 Silent p.P47P 0.33 TCGA-FW-A3R5-06 16 67577114 67577114 C T FAM65A Missense_Mutation p.P829S 0.47 deleterious(0.05) possibly_damaging(0.641) TCGA-FW-A3R5-06 16 67680152 67680152 G A RLTPR Missense_Mutation p.E105K 0.38 deleterious(0.01) benign(0.164) TCGA-FW-A3R5-06 16 67681486 67681486 G A RLTPR Silent p.G284G 0.62 TCGA-FW-A3R5-06 16 67685211 67685211 C T RLTPR Missense_Mutation p.S769F 0.30 tolerated(0.05) benign(0.013) TCGA-FW-A3R5-06 16 67686146 67686146 C T RLTPR Silent p.A907A 0.16 TCGA-FW-A3R5-06 16 67694195 67694195 G A ACD Missense_Mutation p.P63S 0.14 tolerated_low_confidence(0.35) possibly_damaging(0.857) TCGA-FW-A3R5-06 16 67694215 67694215 G A ACD Missense_Mutation p.P56L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-FW-A3R5-06 16 67709604 67709604 G A GFOD2 Silent p.F204F 0.09 TCGA-FW-A3R5-06 16 67763633 67763633 G A RANBP10 Missense_Mutation p.P366L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 16 67763634 67763634 G A RANBP10 Missense_Mutation p.P366S 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-FW-A3R5-06 16 67854817 67854817 C T TSNAXIP1 Nonsense_Mutation p.R21* 0.24 TCGA-FW-A3R5-06 16 67912442 67912442 C T EDC4 Silent p.V364V 0.29 TCGA-FW-A3R5-06 16 67912443 67912443 C T EDC4 Missense_Mutation p.P365S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 16 67915583 67915583 C T EDC4 Missense_Mutation p.P947S 0.25 tolerated(0.27) benign(0.08) TCGA-FW-A3R5-06 16 67920138 67920138 C T NRN1L Silent p.A158A 0.23 TCGA-FW-A3R5-06 16 67942812 67942812 G A PSKH1 Missense_Mutation p.A54T 0.26 tolerated_low_confidence(0.53) benign(0) TCGA-FW-A3R5-06 16 68011711 68011711 G A DPEP3 Missense_Mutation p.R285C 0.43 deleterious(0.02) benign(0.347) TCGA-FW-A3R5-06 16 68021300 68021300 C T DPEP2 3'UTR 0.32 TCGA-FW-A3R5-06 16 68021426 68021426 G A DPEP2 Missense_Mutation p.L482F 0.11 tolerated_low_confidence(0.16) benign(0.049) TCGA-FW-A3R5-06 16 68021793 68021793 G A DPEP2 Missense_Mutation p.R390C 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 68110572 68110572 C T DUS2 Silent p.L374L 0.18 TCGA-FW-A3R5-06 16 68156997 68156997 C T NFATC3 Missense_Mutation p.P404L 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-FW-A3R5-06 16 68160436 68160436 C T NFATC3 Missense_Mutation p.H442Y 0.35 tolerated(0.07) probably_damaging(0.998) TCGA-FW-A3R5-06 16 68266310 68266310 C T ESRP2 Silent p.Q306Q 0.17 TCGA-FW-A3R5-06 16 68398989 68398989 C T SMPD3 Missense_Mutation p.V444M 0.25 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 16 68405072 68405072 C T SMPD3 Missense_Mutation p.R338K 0.34 tolerated(0.3) benign(0.013) TCGA-FW-A3R5-06 16 68405281 68405281 C T SMPD3 Silent p.R268R 0.40 TCGA-FW-A3R5-06 16 68405287 68405287 C T SMPD3 Silent p.Q266Q 0.11 TCGA-FW-A3R5-06 16 68597661 68597661 C T ZFP90 Missense_Mutation p.S324F 0.30 tolerated(0.72) probably_damaging(0.989) TCGA-FW-A3R5-06 16 68597784 68597784 C T ZFP90 Missense_Mutation p.P365L 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 68598372 68598372 C T ZFP90 Missense_Mutation p.A561V 0.20 tolerated(0.07) probably_damaging(0.99) TCGA-FW-A3R5-06 16 68598648 68598648 C T ZFP90 3'UTR 0.24 TCGA-FW-A3R5-06 16 68598649 68598649 T A ZFP90 3'UTR 0.23 TCGA-FW-A3R5-06 16 68732150 68732150 G T CDH3 Silent p.V779V 0.28 TCGA-FW-A3R5-06 16 68842665 68842665 C T CDH1 Missense_Mutation p.P201S 0.22 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 16 68893950 68893950 C T TANGO6 Silent p.N86N 0.24 TCGA-FW-A3R5-06 16 69143776 69143776 G A HAS3 Missense_Mutation p.E160K 0.18 tolerated(0.68) benign(0.009) TCGA-FW-A3R5-06 16 69184802 69184802 C T CIRH1A Missense_Mutation p.P333S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 16 69317986 69317986 C T SNTB2 Missense_Mutation p.S395F 0.18 tolerated(0.2) benign(0.271) TCGA-FW-A3R5-06 16 69727233 69727233 C T NFAT5 Nonsense_Mutation p.Q1169* 0.31 TCGA-FW-A3R5-06 16 69959346 69959346 C T WWP2 Missense_Mutation p.S398L 0.31 tolerated(0.35) benign(0.001) TCGA-FW-A3R5-06 16 69969797 69969797 C T WWP2 Silent p.L628L 0.25 TCGA-FW-A3R5-06 16 70154372 70154372 C T PDPR 5'UTR 0.33 TCGA-FW-A3R5-06 16 70190728 70190728 C T PDPR Silent p.F862F 0.13 TCGA-FW-A3R5-06 16 70220507 70220507 G A CLEC18C 3'UTR 0.24 TCGA-FW-A3R5-06 16 70298899 70298899 G A AARS Missense_Mutation p.P485L 0.37 tolerated(0.21) benign(0.017) TCGA-FW-A3R5-06 16 70500887 70500887 C T FUK Intron 0.27 TCGA-FW-A3R5-06 16 70500891 70500891 C T FUK Intron 0.25 TCGA-FW-A3R5-06 16 705079 705079 C T WDR90 Silent p.V496V 0.16 TCGA-FW-A3R5-06 16 70543268 70543268 G A COG4 Missense_Mutation p.H290Y 0.20 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 16 70605012 70605012 C T SF3B3 Silent p.F1141F 0.26 TCGA-FW-A3R5-06 16 70693520 70693520 G A IL34 Splice_Site p.X135_splice 0.24 TCGA-FW-A3R5-06 16 70778438 70778438 G A VAC14 Silent p.S472S 0.15 TCGA-FW-A3R5-06 16 70820186 70820186 A C VAC14 Missense_Mutation p.S63A 0.29 deleterious(0.03) possibly_damaging(0.786) TCGA-FW-A3R5-06 16 70841800 70841800 G A HYDIN Missense_Mutation p.L5017F 0.30 probably_damaging(0.934) TCGA-FW-A3R5-06 16 70841825 70841825 G A HYDIN Silent p.L5008L 0.16 TCGA-FW-A3R5-06 16 70863576 70863576 G A HYDIN Missense_Mutation p.P4686L 0.24 probably_damaging(0.958) TCGA-FW-A3R5-06 16 708645 708645 G A WDR90 Missense_Mutation p.G963S 0.30 tolerated(0.63) benign(0.047) TCGA-FW-A3R5-06 16 70871758 70871758 G A HYDIN Silent p.L4359L 0.34 TCGA-FW-A3R5-06 16 70889056 70889056 C T HYDIN Missense_Mutation p.E4140K 0.47 possibly_damaging(0.801) TCGA-FW-A3R5-06 16 70913230 70913230 G A HYDIN Silent p.I3509I 0.33 TCGA-FW-A3R5-06 16 70928354 70928354 G A HYDIN Silent p.F3082F 0.19 TCGA-FW-A3R5-06 16 70929903 70929903 C A HYDIN Missense_Mutation p.L3043F 0.15 probably_damaging(0.934) TCGA-FW-A3R5-06 16 70934981 70934981 C T HYDIN Missense_Mutation p.E2992K 0.10 benign(0) TCGA-FW-A3R5-06 16 70954625 70954625 C T HYDIN Missense_Mutation p.G2552R 0.30 benign(0.016) TCGA-FW-A3R5-06 16 70954982 70954982 G A HYDIN Missense_Mutation p.P2433S 0.19 probably_damaging(0.986) TCGA-FW-A3R5-06 16 70986416 70986416 G A HYDIN Missense_Mutation p.R2147C 0.26 probably_damaging(0.988) TCGA-FW-A3R5-06 16 71015363 71015363 C T HYDIN Missense_Mutation p.E1481K 0.29 probably_damaging(0.953) TCGA-FW-A3R5-06 16 71025230 71025230 C T HYDIN Silent p.V1285V 0.23 TCGA-FW-A3R5-06 16 71025259 71025259 C A HYDIN Nonsense_Mutation p.E1276* 0.28 TCGA-FW-A3R5-06 16 71101166 71101166 G A HYDIN Intron 0.44 TCGA-FW-A3R5-06 16 71103356 71103356 G A HYDIN Silent p.P596P 0.20 TCGA-FW-A3R5-06 16 71149660 71149660 G A HYDIN Silent p.T422T 0.37 TCGA-FW-A3R5-06 16 71163622 71163622 C T HYDIN Missense_Mutation p.R383Q 0.31 benign(0.002) TCGA-FW-A3R5-06 16 71163629 71163629 G A HYDIN Silent p.L381L 0.33 TCGA-FW-A3R5-06 16 71209547 71209547 G A HYDIN Missense_Mutation p.S160F 0.17 possibly_damaging(0.658) TCGA-FW-A3R5-06 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.20 probably_damaging(0.953) TCGA-FW-A3R5-06 16 71317926 71317926 G A CMTR2 Missense_Mutation p.S633L 0.09 tolerated(0.22) benign(0.005) TCGA-FW-A3R5-06 16 71319397 71319397 G T CMTR2 Missense_Mutation p.L143I 0.16 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 16 71408680 71408680 G A CALB2 Missense_Mutation p.M68I 0.25 tolerated(0.27) benign(0.13) TCGA-FW-A3R5-06 16 71411594 71411594 G A CALB2 Missense_Mutation p.E96K 0.22 deleterious(0) benign(0.006) TCGA-FW-A3R5-06 16 71423699 71423699 C T CALB2 Silent p.S249S 0.16 TCGA-FW-A3R5-06 16 71423798 71423798 C T CALB2 3'UTR 0.26 TCGA-FW-A3R5-06 16 71483463 71483463 G A ZNF23 Silent p.L155L 0.23 TCGA-FW-A3R5-06 16 71483628 71483628 C T ZNF23 Silent p.K100K 0.22 TCGA-FW-A3R5-06 16 71488009 71488009 G A ZNF23 5'UTR 0.18 TCGA-FW-A3R5-06 16 71488010 71488010 G A ZNF23 5'UTR 0.18 TCGA-FW-A3R5-06 16 71571673 71571673 G A CHST4 Missense_Mutation p.E365K 0.29 tolerated(0.06) benign(0.012) TCGA-FW-A3R5-06 16 71602047 71602047 C T TAT Silent p.%3D 0.22 TCGA-FW-A3R5-06 16 71602144 71602144 G A TAT Missense_Mutation p.P423L 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 71602146 71602146 G A TAT Silent p.V422V 0.09 TCGA-FW-A3R5-06 16 71604216 71604216 G A TAT Missense_Mutation p.R333C 0.29 deleterious(0.04) possibly_damaging(0.762) TCGA-FW-A3R5-06 16 71604579 71604579 C T TAT Intron 0.24 TCGA-FW-A3R5-06 16 71604584 71604584 C T TAT Missense_Mutation p.E304K 0.23 tolerated(0.07) benign(0.055) TCGA-FW-A3R5-06 16 71610209 71610209 C T TAT Missense_Mutation p.R37K 0.28 tolerated(0.4) benign(0.006) TCGA-FW-A3R5-06 16 72094210 72094210 G A HP Silent p.A214A 0.31 TCGA-FW-A3R5-06 16 72110569 72110569 G A HPR Silent p.K212K 0.30 TCGA-FW-A3R5-06 16 72146332 72146332 C T DHX38 Missense_Mutation p.P1207L 0.37 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 16 72156856 72156856 G A PMFBP1 Nonsense_Mutation p.R909* 0.29 TCGA-FW-A3R5-06 16 72164243 72164243 C T PMFBP1 Missense_Mutation p.E551K 0.38 tolerated(0.4) benign(0.324) TCGA-FW-A3R5-06 16 72198665 72198665 G A PMFBP1 Missense_Mutation p.H55Y 0.09 tolerated(0.13) possibly_damaging(0.886) TCGA-FW-A3R5-06 16 72992610 72992610 C T ZFHX3 Missense_Mutation p.E479K 0.17 possibly_damaging(0.899) TCGA-FW-A3R5-06 16 72992819 72992819 G A ZFHX3 Missense_Mutation p.S409L 0.12 possibly_damaging(0.885) TCGA-FW-A3R5-06 16 72992967 72992967 G A ZFHX3 Missense_Mutation p.P360S 0.39 probably_damaging(0.968) TCGA-FW-A3R5-06 16 72993643 72993643 G A ZFHX3 Silent p.V134V 0.22 TCGA-FW-A3R5-06 16 72993646 72993646 G A ZFHX3 Silent p.I133I 0.26 TCGA-FW-A3R5-06 16 74394620 74394620 G A RP11-252A24.2 RNA 0.17 TCGA-FW-A3R5-06 16 74425514 74425514 C A NPIPB15 Missense_Mutation p.L290I 0.08 tolerated_low_confidence(0.06) possibly_damaging(0.688) TCGA-FW-A3R5-06 16 74445633 74445633 G A CLEC18B Silent p.I306I 0.09 TCGA-FW-A3R5-06 16 74445657 74445657 G A CLEC18B Silent p.P298P 0.12 TCGA-FW-A3R5-06 16 74445659 74445659 G A CLEC18B Missense_Mutation p.P298S 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 16 74662525 74662525 G A RFWD3 Silent p.A598A 0.26 TCGA-FW-A3R5-06 16 74708868 74708868 G A MLKL Silent p.P457P 0.31 TCGA-FW-A3R5-06 16 747111 747111 C T FBXL16 Missense_Mutation p.E99K 0.13 tolerated(0.07) benign(0.233) TCGA-FW-A3R5-06 16 74729435 74729435 C T MLKL Missense_Mutation p.G74E 0.12 tolerated(0.57) benign(0) TCGA-FW-A3R5-06 16 74750319 74750319 G A FA2H Missense_Mutation p.S322L 0.41 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 16 75146170 75146170 C T LDHD 3'UTR 0.46 TCGA-FW-A3R5-06 16 75146541 75146541 C T LDHD Silent p.E439E 0.29 TCGA-FW-A3R5-06 16 75203605 75203605 C T ZFP1 Silent p.L199L 0.22 TCGA-FW-A3R5-06 16 75238022 75238022 G A CTRB2 3'UTR 0.13 TCGA-FW-A3R5-06 16 75258657 75258657 G A CTRB1 Missense_Mutation p.G229S 0.19 deleterious(0.02) probably_damaging(0.914) TCGA-FW-A3R5-06 16 75258772 75258772 G A CTRB1 3'UTR 0.36 TCGA-FW-A3R5-06 16 75513171 75513171 G A CHST6 Missense_Mutation p.P186S 0.23 tolerated(0.06) benign(0.126) TCGA-FW-A3R5-06 16 75563854 75563854 G A CHST5 Silent p.F143F 0.31 TCGA-FW-A3R5-06 16 75634067 75634067 G A ADAT1 3'UTR 0.22 TCGA-FW-A3R5-06 16 75675519 75675519 G A KARS Silent p.A83A 0.19 TCGA-FW-A3R5-06 16 7629892 7629892 C T RBFOX1 Silent p.F148F 0.31 TCGA-FW-A3R5-06 16 7645572 7645572 G A RBFOX1 Missense_Mutation p.E184K 0.31 deleterious(0) benign(0.28) TCGA-FW-A3R5-06 16 76482830 76482830 C T CNTNAP4 Silent p.L278L 0.43 TCGA-FW-A3R5-06 16 76556101 76556101 C T CNTNAP4 Missense_Mutation p.P828L 0.09 tolerated(0.18) benign(0.098) TCGA-FW-A3R5-06 16 76569600 76569600 G A CNTNAP4 Missense_Mutation p.G899R 0.30 tolerated(0.24) probably_damaging(0.967) TCGA-FW-A3R5-06 16 76572088 76572088 C T CNTNAP4 Missense_Mutation p.S951F 0.18 tolerated(0.15) benign(0.031) TCGA-FW-A3R5-06 16 76573651 76573651 C T CNTNAP4 Nonsense_Mutation p.Q1013* 0.35 TCGA-FW-A3R5-06 16 76573658 76573658 C T CNTNAP4 Missense_Mutation p.P1015L 0.22 deleterious(0.03) possibly_damaging(0.904) TCGA-FW-A3R5-06 16 76573717 76573717 A C CNTNAP4 Missense_Mutation p.I1035L 0.24 deleterious(0.05) possibly_damaging(0.702) TCGA-FW-A3R5-06 16 76587742 76587742 G A RP11-58C22.1 Missense_Mutation p.G32E 0.15 deleterious(0) benign(0.323) TCGA-FW-A3R5-06 16 7703877 7703877 G A RBFOX1 Missense_Mutation p.R293Q 0.40 tolerated(0.06) possibly_damaging(0.892) TCGA-FW-A3R5-06 16 77327083 77327083 G A ADAMTS18 Missense_Mutation p.P1027S 0.34 tolerated(0.11) benign(0.362) TCGA-FW-A3R5-06 16 77353831 77353831 C T ADAMTS18 Missense_Mutation p.G816E 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 77353842 77353842 G A ADAMTS18 Silent p.F812F 0.14 TCGA-FW-A3R5-06 16 77353848 77353848 C T ADAMTS18 Silent p.G810G 0.28 TCGA-FW-A3R5-06 16 77359766 77359766 C T ADAMTS18 Missense_Mutation p.E677K 0.14 tolerated(0.16) benign(0.029) TCGA-FW-A3R5-06 16 77369707 77369707 G A ADAMTS18 Missense_Mutation p.S602F 0.31 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 16 77387698 77387698 C T ADAMTS18 Missense_Mutation p.D516N 0.27 tolerated(0.05) possibly_damaging(0.456) TCGA-FW-A3R5-06 16 77389848 77389848 C T ADAMTS18 Silent p.K483K 0.09 TCGA-FW-A3R5-06 16 77389943 77389943 G A ADAMTS18 Missense_Mutation p.P452S 0.39 tolerated(0.46) benign(0.309) TCGA-FW-A3R5-06 16 77401379 77401379 C T ADAMTS18 Missense_Mutation p.R246Q 0.29 tolerated(0.6) benign(0.012) TCGA-FW-A3R5-06 16 77401432 77401432 G A ADAMTS18 Silent p.S228S 0.29 TCGA-FW-A3R5-06 16 77401535 77401535 G A ADAMTS18 Missense_Mutation p.P194L 0.33 tolerated(0.2) possibly_damaging(0.867) TCGA-FW-A3R5-06 16 77401587 77401587 G A ADAMTS18 Missense_Mutation p.L177F 0.21 tolerated(0.83) benign(0.101) TCGA-FW-A3R5-06 16 77465424 77465424 C T ADAMTS18 Missense_Mutation p.R88Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 7760787 7760787 G A RBFOX1 3'UTR 0.21 TCGA-FW-A3R5-06 16 77775902 77775902 C T NUDT7 3'UTR 0.12 TCGA-FW-A3R5-06 16 77910348 77910348 C T VAT1L Silent p.P268P 0.17 TCGA-FW-A3R5-06 16 77918525 77918525 G A VAT1L Silent p.V301V 0.37 TCGA-FW-A3R5-06 16 78005818 78005818 C T VAT1L Silent p.T383T 0.22 TCGA-FW-A3R5-06 16 78056580 78056580 G A CLEC3A Silent p.Q28Q 0.08 TCGA-FW-A3R5-06 16 78062033 78062033 G A CLEC3A Missense_Mutation p.E58K 0.37 deleterious(0.03) possibly_damaging(0.487) TCGA-FW-A3R5-06 16 78064729 78064729 C T CLEC3A Silent p.I204I 0.10 TCGA-FW-A3R5-06 16 782336 782336 G A NARFL Silent p.S287S 0.28 TCGA-FW-A3R5-06 16 782337 782337 G A NARFL Missense_Mutation p.S287F 0.28 deleterious(0.02) possibly_damaging(0.806) TCGA-FW-A3R5-06 16 78458811 78458811 C T WWOX Missense_Mutation p.P217L 0.31 deleterious(0) probably_damaging(0.931) TCGA-FW-A3R5-06 16 78458888 78458888 C T WWOX Missense_Mutation p.L243F 0.25 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 16 78458947 78458947 C T WWOX Silent p.S262S 0.20 TCGA-FW-A3R5-06 16 80583494 80583494 G A DYNLRB2 Missense_Mutation p.D65N 0.29 deleterious(0.04) possibly_damaging(0.821) TCGA-FW-A3R5-06 16 80667094 80667094 G A CDYL2 Missense_Mutation p.P219L 0.24 deleterious(0) benign(0.021) TCGA-FW-A3R5-06 16 80718764 80718764 G A CDYL2 Missense_Mutation p.P96L 0.12 tolerated(0.27) benign(0.013) TCGA-FW-A3R5-06 16 81095106 81095106 G A C16orf46 Missense_Mutation p.S283F 0.18 tolerated(0.07) possibly_damaging(0.663) TCGA-FW-A3R5-06 16 81095509 81095509 C T C16orf46 Missense_Mutation p.D149N 0.19 tolerated(0.2) benign(0) TCGA-FW-A3R5-06 16 81134856 81134856 G A GCSH 5'Flank 0.27 TCGA-FW-A3R5-06 16 81167172 81167172 G A PKD1L2 RNA 0.15 TCGA-FW-A3R5-06 16 81181901 81181901 G A PKD1L2 RNA 0.26 TCGA-FW-A3R5-06 16 81236166 81236166 G A PKD1L2 Missense_Mutation p.P361L 0.11 tolerated(0.36) benign(0.005) TCGA-FW-A3R5-06 16 81242165 81242165 C T PKD1L2 Missense_Mutation p.E231K 0.16 tolerated(0.13) benign(0.046) TCGA-FW-A3R5-06 16 81319226 81319226 C T BCMO1 Missense_Mutation p.P430L 0.11 tolerated(1) benign(0.33) TCGA-FW-A3R5-06 16 81324210 81324210 G A BCMO1 3'UTR 0.27 TCGA-FW-A3R5-06 16 817443 817443 C T MSLN Silent p.F531F 0.26 TCGA-FW-A3R5-06 16 818396 818396 G A MSLN Silent p.E546E 0.30 TCGA-FW-A3R5-06 16 818660 818660 G A MSLN Missense_Mutation p.G607E 0.15 deleterious(0.02) unknown(0) TCGA-FW-A3R5-06 16 81914540 81914540 C T PLCG2 Missense_Mutation p.S225L 0.20 tolerated(0.08) benign(0.073) TCGA-FW-A3R5-06 16 81929530 81929530 G A PLCG2 Silent p.S397S 0.45 TCGA-FW-A3R5-06 16 819602 819602 G A MSLNL Silent p.P996P 0.30 TCGA-FW-A3R5-06 16 81969801 81969801 C T PLCG2 Missense_Mutation p.S957F 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 81969958 81969958 G A PLCG2 Missense_Mutation p.M1009I 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 16 82032687 82032687 C T SDR42E1 3'UTR 0.17 TCGA-FW-A3R5-06 16 82033245 82033245 C T SDR42E1 Missense_Mutation p.S218N 0.26 tolerated(0.06) benign(0.12) TCGA-FW-A3R5-06 16 82033447 82033447 G A SDR42E1 Missense_Mutation p.H151Y 0.40 deleterious(0.03) possibly_damaging(0.479) TCGA-FW-A3R5-06 16 82033513 82033513 C T SDR42E1 Missense_Mutation p.G129R 0.11 deleterious(0.02) possibly_damaging(0.739) TCGA-FW-A3R5-06 16 82033732 82033732 C T SDR42E1 Missense_Mutation p.G56R 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 16 82033749 82033749 C T SDR42E1 Missense_Mutation p.G50E 0.22 deleterious(0.03) probably_damaging(0.982) TCGA-FW-A3R5-06 16 82131753 82131753 G A HSD17B2 Silent p.Q292Q 0.25 TCGA-FW-A3R5-06 16 82131918 82131918 G A HSD17B2 Nonsense_Mutation p.W347* 0.30 TCGA-FW-A3R5-06 16 825075 825075 C T MSLNL Silent p.R499R 0.20 TCGA-FW-A3R5-06 16 825636 825636 C T MSLNL Silent p.G375G 0.59 TCGA-FW-A3R5-06 16 828709 828709 G A MSLNL Missense_Mutation p.P338L 0.38 possibly_damaging(0.652) TCGA-FW-A3R5-06 16 83711968 83711968 C T CDH13 Silent p.D527D 0.14 TCGA-FW-A3R5-06 16 83817025 83817025 C T CDH13 Silent p.A741A 0.08 TCGA-FW-A3R5-06 16 83948952 83948952 C T MLYCD Missense_Mutation p.S447F 0.29 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 16 839621 839621 C T CHTF18 Missense_Mutation p.P171L 0.30 tolerated(0.06) possibly_damaging(0.878) TCGA-FW-A3R5-06 16 83999347 83999347 C T OSGIN1 Missense_Mutation p.S390F 0.10 deleterious(0.02) probably_damaging(0.914) TCGA-FW-A3R5-06 16 84024144 84024144 C T NECAB2 Missense_Mutation p.L169F 0.33 deleterious(0.03) possibly_damaging(0.894) TCGA-FW-A3R5-06 16 84024221 84024221 G A NECAB2 Silent p.Q194Q 0.33 TCGA-FW-A3R5-06 16 84050127 84050127 G A SLC38A8 Missense_Mutation p.P387S 0.26 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 16 84070370 84070370 G A SLC38A8 Missense_Mutation p.L109F 0.21 deleterious(0.01) possibly_damaging(0.493) TCGA-FW-A3R5-06 16 84075595 84075595 G A SLC38A8 Silent p.V56V 0.32 TCGA-FW-A3R5-06 16 84089651 84089651 G A MBTPS1 Missense_Mutation p.P974L 0.27 deleterious_low_confidence(0.01) benign(0.326) TCGA-FW-A3R5-06 16 84118695 84118695 G A MBTPS1 Silent p.T393T 0.10 TCGA-FW-A3R5-06 16 84188309 84188309 G A DNAAF1 Missense_Mutation p.M160I 0.30 tolerated(0.07) benign(0.002) TCGA-FW-A3R5-06 16 84199570 84199570 G A DNAAF1 Intron 0.26 TCGA-FW-A3R5-06 16 84213612 84213612 G A TAF1C Missense_Mutation p.P547S 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 84224922 84224922 C T ADAD2 Missense_Mutation p.P29L 0.37 deleterious_low_confidence(0.01) benign(0.086) TCGA-FW-A3R5-06 16 84228059 84228059 C T ADAD2 Missense_Mutation p.P216S 0.35 tolerated(0.19) benign(0.019) TCGA-FW-A3R5-06 16 84256408 84256408 C T KCNG4 Silent p.G325G 0.20 TCGA-FW-A3R5-06 16 84270552 84270552 C T KCNG4 Silent p.R180R 0.32 TCGA-FW-A3R5-06 16 84270630 84270630 C T KCNG4 Silent p.E154E 0.30 TCGA-FW-A3R5-06 16 84270886 84270886 C T KCNG4 Missense_Mutation p.R69K 0.13 tolerated(0.6) probably_damaging(0.994) TCGA-FW-A3R5-06 16 84438821 84438821 G A ATP2C2 Missense_Mutation p.E100K 0.10 deleterious(0.01) possibly_damaging(0.746) TCGA-FW-A3R5-06 16 84456240 84456240 C T ATP2C2 Silent p.V260V 0.16 TCGA-FW-A3R5-06 16 84473122 84473122 C T ATP2C2 Missense_Mutation p.R401C 0.29 tolerated(0.16) benign(0.003) TCGA-FW-A3R5-06 16 84474551 84474551 G A ATP2C2 Missense_Mutation p.G433E 0.27 tolerated(0.17) probably_damaging(1) TCGA-FW-A3R5-06 16 84520383 84520383 G A TLDC1 Missense_Mutation p.S271L 0.30 deleterious(0) possibly_damaging(0.701) TCGA-FW-A3R5-06 16 84600675 84600675 G A COTL1 Intron 0.47 TCGA-FW-A3R5-06 16 84778340 84778340 C T USP10 Missense_Mutation p.P85S 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 16 84796646 84796646 C T USP10 Missense_Mutation p.H536Y 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 84872160 84872160 C T CRISPLD2 Missense_Mutation p.S20F 0.26 deleterious(0.01) benign(0.24) TCGA-FW-A3R5-06 16 85840354 85840354 C T COX4I1 Silent p.P128P 0.26 TCGA-FW-A3R5-06 16 85936559 85936559 G A IRF8 Intron 0.19 TCGA-FW-A3R5-06 16 85952165 85952165 G A IRF8 Silent p.E248E 0.35 TCGA-FW-A3R5-06 16 85954923 85954923 C T IRF8 3'UTR 0.25 TCGA-FW-A3R5-06 16 86575416 86575416 G A MTHFSD Missense_Mutation p.P190S 0.14 deleterious(0.05) possibly_damaging(0.764) TCGA-FW-A3R5-06 16 86601587 86601587 G A FOXC2 Missense_Mutation p.E216K 0.37 tolerated(0.23) probably_damaging(0.981) TCGA-FW-A3R5-06 16 86612425 86612425 C T FOXL1 Silent p.F32F 0.19 TCGA-FW-A3R5-06 16 8736037 8736037 C T METTL22 Missense_Mutation p.H294Y 0.10 tolerated(0.07) benign(0.12) TCGA-FW-A3R5-06 16 87377322 87377322 G A FBXO31 Missense_Mutation p.P180L 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 16 8738571 8738571 C T METTL22 Missense_Mutation p.L390F 0.27 deleterious(0.01) benign(0.056) TCGA-FW-A3R5-06 16 87445462 87445462 G A ZCCHC14 Silent p.S818S 0.20 TCGA-FW-A3R5-06 16 87448052 87448052 G A ZCCHC14 Missense_Mutation p.P387L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 16 87457444 87457444 G A ZCCHC14 Missense_Mutation p.S134F 0.32 tolerated(0.55) benign(0.038) TCGA-FW-A3R5-06 16 87636987 87636987 G A JPH3 Missense_Mutation p.G79R 0.56 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 16 87678058 87678058 C T JPH3 Missense_Mutation p.R193C 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 87678484 87678484 G A JPH3 Missense_Mutation p.E335K 0.21 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 16 87866494 87866494 G A SLC7A5 3'UTR 0.11 TCGA-FW-A3R5-06 16 87936081 87936081 C T CA5A Missense_Mutation p.E169K 0.33 tolerated(0.13) possibly_damaging(0.461) TCGA-FW-A3R5-06 16 88066771 88066771 C T BANP Missense_Mutation p.P366S 0.22 tolerated_low_confidence(0.12) benign(0.097) TCGA-FW-A3R5-06 16 8862729 8862729 C T ABAT Missense_Mutation p.P239S 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 88695234 88695234 C T ZC3H18 Silent p.A846A 0.22 TCGA-FW-A3R5-06 16 88706628 88706628 C T IL17C 3'UTR 0.56 TCGA-FW-A3R5-06 16 88723893 88723893 G A MVD Silent p.F118F 0.30 TCGA-FW-A3R5-06 16 88873061 88873061 C T CDT1 Silent p.A367A 0.21 TCGA-FW-A3R5-06 16 88925146 88925146 C T TRAPPC2L Silent p.V51V 0.20 TCGA-FW-A3R5-06 16 88945680 88945680 C T CBFA2T3 Missense_Mutation p.E554K 0.26 deleterious(0.03) benign(0.296) TCGA-FW-A3R5-06 16 88958337 88958337 C T CBFA2T3 Missense_Mutation p.E222K 0.23 deleterious(0) possibly_damaging(0.892) TCGA-FW-A3R5-06 16 88967948 88967948 C T CBFA2T3 Missense_Mutation p.G90R 0.22 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-FW-A3R5-06 16 89251666 89251666 G A CDH15 Silent p.Q196Q 0.30 TCGA-FW-A3R5-06 16 89251712 89251712 C T CDH15 Missense_Mutation p.R212C 0.60 tolerated(0.18) benign(0.329) TCGA-FW-A3R5-06 16 89256747 89256747 C T CDH15 Nonsense_Mutation p.Q359* 0.29 TCGA-FW-A3R5-06 16 89256788 89256788 C T CDH15 Silent p.P372P 0.19 TCGA-FW-A3R5-06 16 89259965 89259965 G A CDH15 Missense_Mutation p.R648Q 0.41 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 16 89261523 89261523 C T CDH15 Missense_Mutation p.P802L 0.41 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 16 89293398 89293398 C T ZNF778 Silent p.F206F 0.23 TCGA-FW-A3R5-06 16 89346952 89346952 G A ANKRD11 Missense_Mutation p.L2000F 0.25 possibly_damaging(0.798) TCGA-FW-A3R5-06 16 89347138 89347138 G A ANKRD11 Missense_Mutation p.P1938S 0.30 benign(0.057) TCGA-FW-A3R5-06 16 89347331 89347331 G A ANKRD11 Silent p.V1873V 0.26 TCGA-FW-A3R5-06 16 89348928 89348928 G A ANKRD11 Missense_Mutation p.P1341L 0.29 benign(0.021) TCGA-FW-A3R5-06 16 89351410 89351410 G A ANKRD11 Silent p.L514L 0.29 TCGA-FW-A3R5-06 16 89619494 89619494 C T SPG7 Silent p.A629A 0.24 TCGA-FW-A3R5-06 16 89619495 89619495 C T SPG7 Silent p.L630L 0.24 TCGA-FW-A3R5-06 16 89650480 89650480 C T CPNE7 Silent p.L234L 0.17 TCGA-FW-A3R5-06 16 89650505 89650505 G A CPNE7 Missense_Mutation p.D243N 0.12 tolerated(0.69) possibly_damaging(0.867) TCGA-FW-A3R5-06 16 89651233 89651233 G A CPNE7 Missense_Mutation p.D262N 0.21 tolerated(0.1) possibly_damaging(0.846) TCGA-FW-A3R5-06 16 89789189 89789189 C T ZNF276 Silent p.S152S 0.33 TCGA-FW-A3R5-06 16 89790008 89790008 C T ZNF276 Silent p.T299T 0.31 TCGA-FW-A3R5-06 16 8987935 8987935 G A USP7 Silent p.L1077L 0.22 TCGA-FW-A3R5-06 16 90001895 90001895 C T TUBB3 Missense_Mutation p.P346S 0.22 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-FW-A3R5-06 16 9010979 9010979 G A USP7 Missense_Mutation p.S252L 0.32 tolerated(0.13) benign(0.158) TCGA-FW-A3R5-06 16 90124389 90124389 G A PRDM7 3'UTR 0.19 TCGA-FW-A3R5-06 16 90161013 90161013 C T TUBB8P7 Intron 0.29 TCGA-FW-A3R5-06 16 90162497 90162497 C T TUBB8P7 RNA 0.30 TCGA-FW-A3R5-06 16 961030 961030 G A LMF1 Silent p.C188C 0.30 TCGA-FW-A3R5-06 16 9856977 9856977 C T GRIN2A 3'UTR 0.20 TCGA-FW-A3R5-06 16 9857197 9857197 G A GRIN2A Missense_Mutation p.R1402W 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-FW-A3R5-06 16 9857232 9857232 G A GRIN2A Missense_Mutation p.S1390L 0.20 tolerated(0.36) benign(0.006) TCGA-FW-A3R5-06 16 9857389 9857389 C T GRIN2A Missense_Mutation p.G1338R 0.16 tolerated(0.33) possibly_damaging(0.762) TCGA-FW-A3R5-06 16 9857825 9857825 G A GRIN2A Silent p.T1192T 0.33 TCGA-FW-A3R5-06 16 9857927 9857927 G A GRIN2A Silent p.F1158F 0.08 TCGA-FW-A3R5-06 16 9857960 9857960 G A GRIN2A Silent p.F1147F 0.22 TCGA-FW-A3R5-06 16 9858068 9858068 G A GRIN2A Silent p.S1111S 0.30 TCGA-FW-A3R5-06 16 9858321 9858321 G A GRIN2A Missense_Mutation p.S1027F 0.12 tolerated(0.28) benign(0.153) TCGA-FW-A3R5-06 16 9858356 9858356 C T GRIN2A Silent p.K1015K 0.34 TCGA-FW-A3R5-06 16 9858500 9858500 C T GRIN2A Silent p.V967V 0.33 TCGA-FW-A3R5-06 16 9858544 9858544 C G GRIN2A Missense_Mutation p.E953Q 0.07 deleterious(0.03) benign(0.197) TCGA-FW-A3R5-06 16 9916206 9916206 G A GRIN2A Missense_Mutation p.R695W 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 16 9934828 9934828 T A GRIN2A Nonsense_Mutation p.K488* 0.33 TCGA-FW-A3R5-06 16 9943624 9943624 G A GRIN2A Silent p.F439F 0.29 TCGA-FW-A3R5-06 17 10204902 10204902 C T MYH13 Missense_Mutation p.R1929Q 0.10 deleterious(0.02) benign(0.011) TCGA-FW-A3R5-06 17 10209890 10209890 C T MYH13 Silent p.E1784E 0.43 TCGA-FW-A3R5-06 17 10222127 10222127 C T MYH13 Missense_Mutation p.E1240K 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 17 10222305 10222305 C T MYH13 Silent p.R1180R 0.54 TCGA-FW-A3R5-06 17 10223741 10223741 C T MYH13 Missense_Mutation p.D1062N 0.53 deleterious(0.01) benign(0.322) TCGA-FW-A3R5-06 17 10235458 10235458 G A MYH13 Silent p.S752S 0.42 TCGA-FW-A3R5-06 17 10243554 10243554 C T MYH13 Missense_Mutation p.E657K 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 17 10250079 10250079 G A MYH13 Missense_Mutation p.S394F 0.41 deleterious(0) possibly_damaging(0.81) TCGA-FW-A3R5-06 17 10263371 10263371 C T MYH13 Missense_Mutation p.G184E 0.46 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 10265703 10265703 C T MYH13 Missense_Mutation p.E108K 0.42 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 17 10265791 10265791 G A MYH13 Silent p.F78F 0.36 TCGA-FW-A3R5-06 17 10293918 10293918 C T MYH8 Silent p.E1889E 0.40 TCGA-FW-A3R5-06 17 10304075 10304075 C T MYH8 Missense_Mutation p.E1123K 0.52 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 10304276 10304276 C T MYH8 Silent p.K1085K 0.40 TCGA-FW-A3R5-06 17 10304663 10304663 G A MYH8 Silent p.L1013L 0.42 TCGA-FW-A3R5-06 17 10312885 10312885 G A MYH8 Silent p.I536I 0.34 TCGA-FW-A3R5-06 17 10315987 10315987 G A MYH8 Silent p.L402L 0.40 TCGA-FW-A3R5-06 17 10315990 10315990 G A MYH8 Silent p.A401A 0.41 TCGA-FW-A3R5-06 17 10323457 10323457 G A MYH8 Nonsense_Mutation p.Q30* 0.42 TCGA-FW-A3R5-06 17 10348598 10348598 C T MYH4 Missense_Mutation p.E1751K 0.29 deleterious(0.01) benign(0.015) TCGA-FW-A3R5-06 17 10353916 10353916 G A MYH4 Silent p.D1345D 0.46 TCGA-FW-A3R5-06 17 10356180 10356180 C T MYH4 Missense_Mutation p.G1061S 0.40 deleterious(0.03) possibly_damaging(0.896) TCGA-FW-A3R5-06 17 10357094 10357094 C T MYH4 Missense_Mutation p.E934K 0.30 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 17 10357980 10357980 C T MYH4 Silent p.E861E 0.28 TCGA-FW-A3R5-06 17 10358346 10358346 C T MYH4 Missense_Mutation p.E783K 0.39 deleterious(0.02) benign(0.065) TCGA-FW-A3R5-06 17 10358358 10358358 C T MYH4 Missense_Mutation p.E779K 0.39 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 17 10363550 10363550 C T MYH4 Silent p.E412E 0.46 TCGA-FW-A3R5-06 17 10369690 10369690 G A MYH4 Missense_Mutation p.P83L 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 10401081 10401081 G A MYH1 Silent p.A1445A 0.40 TCGA-FW-A3R5-06 17 10401959 10401959 C T MYH1 Missense_Mutation p.E1389K 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 17 10404786 10404786 C T MYH1 Missense_Mutation p.E1127K 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 17 10408483 10408483 C T MYH1 Missense_Mutation p.R811K 0.25 deleterious(0.05) benign(0.003) TCGA-FW-A3R5-06 17 10408708 10408708 G A MYH1 Silent p.T765T 0.34 TCGA-FW-A3R5-06 17 10415830 10415830 C T MYH1 Missense_Mutation p.E348K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 10416277 10416277 G A MYH1 Silent p.L271L 0.38 TCGA-FW-A3R5-06 17 10419245 10419245 G A MYH1 Missense_Mutation p.T168I 0.44 tolerated(0.07) possibly_damaging(0.795) TCGA-FW-A3R5-06 17 10419850 10419850 G A MYH1 Missense_Mutation p.S37L 0.10 tolerated(0.07) benign(0.325) TCGA-FW-A3R5-06 17 10419894 10419894 C T MYH1 Silent p.R22R 0.33 TCGA-FW-A3R5-06 17 10427852 10427852 C T MYH2 Silent p.E1702E 0.41 TCGA-FW-A3R5-06 17 10433021 10433021 C T MYH2 Missense_Mutation p.E993K 0.43 deleterious(0.01) possibly_damaging(0.786) TCGA-FW-A3R5-06 17 10435015 10435015 C T MYH2 Missense_Mutation p.E878K 0.49 deleterious(0.03) possibly_damaging(0.562) TCGA-FW-A3R5-06 17 10435073 10435073 C T MYH2 Missense_Mutation p.M858I 0.41 deleterious(0.01) benign(0.018) TCGA-FW-A3R5-06 17 10436605 10436605 C T MYH2 Missense_Mutation p.R813K 0.45 tolerated(0.06) benign(0.026) TCGA-FW-A3R5-06 17 10440650 10440650 C T MYH2 Silent p.K599K 0.43 TCGA-FW-A3R5-06 17 10443963 10443963 C T MYH2 Missense_Mutation p.G319E 0.18 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 17 10448673 10448673 G A MYH2 Silent p.F165F 0.30 TCGA-FW-A3R5-06 17 10538689 10538689 C T MYH3 Silent p.E1389E 0.44 TCGA-FW-A3R5-06 17 10545925 10545925 T C MYH3 Missense_Mutation p.K566R 0.41 deleterious(0.04) probably_damaging(0.979) TCGA-FW-A3R5-06 17 10545978 10545978 G A MYH3 Silent p.S548S 0.37 TCGA-FW-A3R5-06 17 10550730 10550730 C T MYH3 Missense_Mutation p.R250Q 0.39 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 17 10554890 10554890 G A MYH3 Silent p.R148R 0.46 TCGA-FW-A3R5-06 17 10555862 10555862 C T MYH3 Missense_Mutation p.E75K 0.40 deleterious(0.01) benign(0.093) TCGA-FW-A3R5-06 17 11532847 11532847 G A DNAH9 Silent p.E488E 0.41 TCGA-FW-A3R5-06 17 11535948 11535948 T A DNAH9 Missense_Mutation p.D521E 0.31 benign(0.163) TCGA-FW-A3R5-06 17 11572916 11572916 C T DNAH9 Missense_Mutation p.P1053L 0.31 benign(0.287) TCGA-FW-A3R5-06 17 11583189 11583189 G A DNAH9 Missense_Mutation p.E1157K 0.34 benign(0.005) TCGA-FW-A3R5-06 17 11607595 11607595 G A DNAH9 Missense_Mutation p.E1743K 0.38 benign(0.403) TCGA-FW-A3R5-06 17 11631189 11631189 G A DNAH9 Missense_Mutation p.D1922N 0.47 probably_damaging(0.994) TCGA-FW-A3R5-06 17 11631223 11631223 C T DNAH9 Missense_Mutation p.S1933L 0.48 probably_damaging(0.994) TCGA-FW-A3R5-06 17 11642314 11642314 G A DNAH9 Missense_Mutation p.G1978S 0.20 probably_damaging(0.986) TCGA-FW-A3R5-06 17 11648272 11648272 C T DNAH9 Silent p.F2090F 0.47 TCGA-FW-A3R5-06 17 11650885 11650885 G A DNAH9 Missense_Mutation p.E2138K 0.57 benign(0.03) TCGA-FW-A3R5-06 17 11651035 11651035 G A DNAH9 Missense_Mutation p.D2188N 0.33 benign(0.074) TCGA-FW-A3R5-06 17 11666769 11666769 C T DNAH9 Silent p.I2336I 0.33 TCGA-FW-A3R5-06 17 11684402 11684402 C T DNAH9 Silent p.F2543F 0.33 TCGA-FW-A3R5-06 17 11700964 11700964 C T DNAH9 Silent p.H2758H 0.33 TCGA-FW-A3R5-06 17 11725334 11725334 G A DNAH9 Silent p.E2935E 0.41 TCGA-FW-A3R5-06 17 11725780 11725780 G A DNAH9 Missense_Mutation p.G2959E 0.12 probably_damaging(0.997) TCGA-FW-A3R5-06 17 11725817 11725817 C T DNAH9 Silent p.A2971A 0.41 TCGA-FW-A3R5-06 17 11738216 11738216 G A DNAH9 Splice_Site p.X3169_splice 0.46 TCGA-FW-A3R5-06 17 11835445 11835445 C T DNAH9 Missense_Mutation p.R4074C 0.43 possibly_damaging(0.668) TCGA-FW-A3R5-06 17 11881712 11881712 G A ZNF18 Silent p.A404A 0.09 TCGA-FW-A3R5-06 17 11881772 11881772 G A ZNF18 Silent p.T384T 0.23 TCGA-FW-A3R5-06 17 12618853 12618853 G A MYOCD Missense_Mutation p.E47K 0.45 tolerated(0.14) benign(0.075) TCGA-FW-A3R5-06 17 12639525 12639525 G A MYOCD Missense_Mutation p.E155K 0.40 deleterious(0) possibly_damaging(0.785) TCGA-FW-A3R5-06 17 12649361 12649361 C T MYOCD Missense_Mutation p.P366L 0.11 tolerated(0.05) benign(0.113) TCGA-FW-A3R5-06 17 12656327 12656327 G A MYOCD Silent p.E574E 0.52 TCGA-FW-A3R5-06 17 12661513 12661513 G A MYOCD Missense_Mutation p.E772K 0.34 deleterious(0) benign(0.381) TCGA-FW-A3R5-06 17 12661581 12661581 G A MYOCD Intron 0.29 TCGA-FW-A3R5-06 17 12666901 12666901 C T MYOCD Silent p.F967F 0.40 TCGA-FW-A3R5-06 17 12666919 12666919 C T MYOCD Silent p.L973L 0.30 TCGA-FW-A3R5-06 17 12832322 12832322 G A ARHGAP44 Missense_Mutation p.E181K 0.44 deleterious(0.03) probably_damaging(0.978) TCGA-FW-A3R5-06 17 12903528 12903528 G A ELAC2 Silent p.F456F 0.32 TCGA-FW-A3R5-06 17 13503904 13503904 C T HS3ST3A1 Silent p.V181V 0.30 TCGA-FW-A3R5-06 17 1371776 1371776 G A MYO1C Silent p.A875A 0.39 TCGA-FW-A3R5-06 17 15234464 15234464 C T TEKT3 Missense_Mutation p.G147R 0.34 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 17 15234791 15234791 G A TEKT3 Missense_Mutation p.P38S 0.32 deleterious(0.04) benign(0.411) TCGA-FW-A3R5-06 17 15492462 15492462 G A CDRT1 Nonsense_Mutation p.Q696* 0.43 TCGA-FW-A3R5-06 17 1549859 1549859 G A RILP Silent p.S361S 0.48 TCGA-FW-A3R5-06 17 1558805 1558805 G A PRPF8 Silent p.A1942A 0.41 TCGA-FW-A3R5-06 17 1562025 1562025 G A PRPF8 Missense_Mutation p.P1724L 0.50 tolerated(0.09) benign(0.005) TCGA-FW-A3R5-06 17 15964870 15964870 G A NCOR1 Missense_Mutation p.P1909L 0.12 benign(0.11) TCGA-FW-A3R5-06 17 15973617 15973617 G A NCOR1 Missense_Mutation p.L1459F 0.29 probably_damaging(0.997) TCGA-FW-A3R5-06 17 16466515 16466515 G A ZNF287 Silent p.P220P 0.18 TCGA-FW-A3R5-06 17 1650748 1650748 C T SERPINF2 Silent p.F219F 0.44 TCGA-FW-A3R5-06 17 16612290 16612290 G A CCDC144A Missense_Mutation p.E307K 0.28 deleterious(0.01) possibly_damaging(0.636) TCGA-FW-A3R5-06 17 16638370 16638370 C T CCDC144A Nonsense_Mutation p.Q929* 0.50 TCGA-FW-A3R5-06 17 16701712 16701712 G A CCDC144A 3'UTR 0.31 TCGA-FW-A3R5-06 17 16725302 16725302 C T AC022596.6 RNA 0.29 TCGA-FW-A3R5-06 17 1674335 1674335 G A SERPINF1 Missense_Mutation p.R99Q 0.52 tolerated(0.24) benign(0.007) TCGA-FW-A3R5-06 17 16842839 16842839 C T TNFRSF13B 3'UTR 0.39 TCGA-FW-A3R5-06 17 16852153 16852153 G A TNFRSF13B Missense_Mutation p.P115L 0.47 tolerated(0.31) benign(0.021) TCGA-FW-A3R5-06 17 16855835 16855835 G A TNFRSF13B Missense_Mutation p.P42S 0.41 tolerated(0.53) benign(0.161) TCGA-FW-A3R5-06 17 17250254 17250254 C T NT5M Missense_Mutation p.P227L 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.696) TCGA-FW-A3R5-06 17 17394729 17394729 C T MED9 Missense_Mutation p.L121F 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 17697186 17697186 C T RAI1 Silent p.L308L 0.32 TCGA-FW-A3R5-06 17 17699041 17699041 C T RAI1 Silent p.L927L 0.30 TCGA-FW-A3R5-06 17 17891358 17891358 C T LRRC48 Silent p.L130L 0.31 TCGA-FW-A3R5-06 17 18022300 18022300 C T MYO15A Silent p.G62G 0.41 TCGA-FW-A3R5-06 17 18030129 18030129 C T MYO15A Silent p.L1297L 0.47 TCGA-FW-A3R5-06 17 18039118 18039118 G A MYO15A Missense_Mutation p.A1526T 0.14 unknown(0) TCGA-FW-A3R5-06 17 18044404 18044404 G A MYO15A Silent p.R1826R 0.37 TCGA-FW-A3R5-06 17 18062264 18062264 G A MYO15A Missense_Mutation p.E3037K 0.26 unknown(0) TCGA-FW-A3R5-06 17 18075548 18075548 C T MYO15A Missense_Mutation p.P3432S 0.41 unknown(0) TCGA-FW-A3R5-06 17 18156698 18156698 G A FLII Silent p.P310P 0.14 TCGA-FW-A3R5-06 17 18167217 18167217 C T MIEF2 Silent p.F179F 0.54 TCGA-FW-A3R5-06 17 18181530 18181530 G A TOP3A Silent p.P762P 0.39 TCGA-FW-A3R5-06 17 18219086 18219086 C T SMCR8 5'UTR 0.42 TCGA-FW-A3R5-06 17 18333049 18333049 G A KRT17P2 RNA 0.56 TCGA-FW-A3R5-06 17 18565296 18565296 G A ZNF286B Missense_Mutation p.S508L 0.35 deleterious(0.02) benign(0.062) TCGA-FW-A3R5-06 17 18638769 18638769 C T TRIM16L Missense_Mutation p.P348L 0.21 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-FW-A3R5-06 17 18648044 18648044 G A FBXW10 Missense_Mutation p.E163K 0.26 deleterious(0.03) benign(0.037) TCGA-FW-A3R5-06 17 18668094 18668094 C T FBXW10 Silent p.F491F 0.43 TCGA-FW-A3R5-06 17 18671986 18671986 C T FBXW10 Missense_Mutation p.P615L 0.53 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 17 18671987 18671987 C T FBXW10 Silent p.P615P 0.52 TCGA-FW-A3R5-06 17 18863935 18863935 C T SLC5A10 Silent p.S141S 0.38 TCGA-FW-A3R5-06 17 19286458 19286458 C T MAPK7 Missense_Mutation p.P789S 0.45 tolerated(0.09) probably_damaging(0.994) TCGA-FW-A3R5-06 17 19317917 19317917 C T RNF112 Missense_Mutation p.R318C 0.41 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 17 19319212 19319212 G A RNF112 Silent p.T540T 0.51 TCGA-FW-A3R5-06 17 19319266 19319266 C T RNF112 Silent p.L558L 0.64 TCGA-FW-A3R5-06 17 19470440 19470440 G A SLC47A1 Missense_Mutation p.G403E 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 19480671 19480671 G A SLC47A1 Silent p.T506T 0.26 TCGA-FW-A3R5-06 17 19480832 19480832 G A SLC47A1 Missense_Mutation p.G560E 0.33 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 1961664 1961664 G A HIC1 Silent p.T579T 0.44 TCGA-FW-A3R5-06 17 19642357 19642357 C T ALDH3A1 Missense_Mutation p.D390N 0.56 deleterious(0.04) benign(0.362) TCGA-FW-A3R5-06 17 20135715 20135715 C T SPECC1 Missense_Mutation p.P783L 0.42 tolerated(0.82) benign(0) TCGA-FW-A3R5-06 17 20149272 20149272 C T SPECC1 Silent p.V795V 0.36 TCGA-FW-A3R5-06 17 21318838 21318838 G A KCNJ12 Missense_Mutation p.E62K 0.25 tolerated(0.44) benign(0.028) TCGA-FW-A3R5-06 17 21319378 21319378 G A KCNJ12 Missense_Mutation p.E242K 0.10 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 17 21731166 21731166 C T UBBP4 Silent p.F156F 0.43 TCGA-FW-A3R5-06 17 25630396 25630396 C T WSB1 Silent p.L71L 0.42 TCGA-FW-A3R5-06 17 25936266 25936266 C T KSR1 Silent p.L597L 0.53 TCGA-FW-A3R5-06 17 25937060 25937060 C T KSR1 Intron 0.43 TCGA-FW-A3R5-06 17 25967717 25967717 C T LGALS9 Missense_Mutation p.P84L 0.46 tolerated(0.14) benign(0.091) TCGA-FW-A3R5-06 17 25976086 25976086 C T LGALS9 3'UTR 0.50 TCGA-FW-A3R5-06 17 26084262 26084262 C T NOS2 3'UTR 0.45 TCGA-FW-A3R5-06 17 26085934 26085934 C T NOS2 Silent p.Q1109Q 0.42 TCGA-FW-A3R5-06 17 26089961 26089961 G A NOS2 Missense_Mutation p.S888F 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 26093564 26093564 G A NOS2 Missense_Mutation p.R740W 0.24 deleterious(0) possibly_damaging(0.893) TCGA-FW-A3R5-06 17 26096140 26096140 G A NOS2 Missense_Mutation p.R633W 0.17 deleterious(0) possibly_damaging(0.773) TCGA-FW-A3R5-06 17 26108068 26108068 G A NOS2 Silent p.F286F 0.32 TCGA-FW-A3R5-06 17 26115882 26115882 C T NOS2 Missense_Mutation p.G91S 0.45 tolerated(0.5) benign(0.112) TCGA-FW-A3R5-06 17 26115908 26115908 G A NOS2 Missense_Mutation p.P82L 0.47 deleterious(0) possibly_damaging(0.616) TCGA-FW-A3R5-06 17 26821441 26821441 C T SLC13A2 Missense_Mutation p.L456F 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 17 26918769 26918769 G A SPAG5 Missense_Mutation p.P462S 0.38 tolerated(0.15) benign(0.201) TCGA-FW-A3R5-06 17 26966471 26966471 G A KIAA0100 Missense_Mutation p.T364I 0.51 tolerated(0.22) benign(0.331) TCGA-FW-A3R5-06 17 27225649 27225649 G A DHRS13 Missense_Mutation p.P315L 0.44 tolerated(0.1) benign(0.005) TCGA-FW-A3R5-06 17 27493257 27493257 G A MYO18A Silent p.S234S 0.42 TCGA-FW-A3R5-06 17 27857437 27857437 C T TAOK1 Nonsense_Mutation p.Q721* 0.48 TCGA-FW-A3R5-06 17 27889807 27889807 G A ABHD15 Silent p.G393G 0.44 TCGA-FW-A3R5-06 17 27909760 27909760 G A GIT1 Missense_Mutation p.P121S 0.39 tolerated(0.13) benign(0.311) TCGA-FW-A3R5-06 17 27935057 27935057 C T ANKRD13B Missense_Mutation p.R102W 0.40 deleterious(0.01) probably_damaging(0.912) TCGA-FW-A3R5-06 17 27943157 27943157 G A CORO6 Missense_Mutation p.P367S 0.53 tolerated(0.15) benign(0.022) TCGA-FW-A3R5-06 17 27963289 27963289 G A SSH2 Silent p.S626S 0.11 TCGA-FW-A3R5-06 17 2808585 2808585 G A RAP1GAP2 Missense_Mutation p.E30K 0.44 deleterious(0.04) benign(0.097) TCGA-FW-A3R5-06 17 28414151 28414151 C T EFCAB5 Missense_Mutation p.P1217L 0.46 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 17 28534796 28534796 C T SLC6A4 Nonsense_Mutation p.W535* 0.10 TCGA-FW-A3R5-06 17 28537605 28537605 G A SLC6A4 Silent p.A459A 0.09 TCGA-FW-A3R5-06 17 28537606 28537606 G A SLC6A4 Missense_Mutation p.A459V 0.10 tolerated(0.16) benign(0.021) TCGA-FW-A3R5-06 17 28548732 28548732 C T SLC6A4 Nonsense_Mutation p.W82* 0.46 TCGA-FW-A3R5-06 17 2865964 2865964 G A RAP1GAP2 Missense_Mutation p.G68R 0.19 tolerated(0.06) benign(0.094) TCGA-FW-A3R5-06 17 28788251 28788251 C T CPD Silent p.C1184C 0.40 TCGA-FW-A3R5-06 17 2884530 2884530 C T RAP1GAP2 Silent p.V239V 0.44 TCGA-FW-A3R5-06 17 28886654 28886654 C T TBC1D29 5'UTR 0.51 TCGA-FW-A3R5-06 17 2898716 2898716 C T RAP1GAP2 Missense_Mutation p.H334Y 0.53 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 17 2908728 2908728 C T RAP1GAP2 Silent p.F422F 0.14 TCGA-FW-A3R5-06 17 29527590 29527590 C T NF1 Nonsense_Mutation p.Q347* 0.38 TCGA-FW-A3R5-06 17 29562632 29562632 G T NF1 Nonsense_Mutation p.E1238* 0.39 TCGA-FW-A3R5-06 17 29562639 29562639 C T NF1 Missense_Mutation p.A1240V 0.08 deleterious(0) possibly_damaging(0.604) TCGA-FW-A3R5-06 17 2966227 2966227 G A OR1D5 Silent p.I225I 0.28 TCGA-FW-A3R5-06 17 2966524 2966524 G A OR1D5 Silent p.T126T 0.37 TCGA-FW-A3R5-06 17 2995949 2995949 G A OR1D2 Silent p.I114I 0.43 TCGA-FW-A3R5-06 17 3030699 3030699 G A OR1G1 Silent p.I49I 0.38 TCGA-FW-A3R5-06 17 30348996 30348996 C T LRRC37B Silent p.S277S 0.52 TCGA-FW-A3R5-06 17 30503006 30503006 C T RHOT1 Missense_Mutation p.A83V 0.22 tolerated(0.09) possibly_damaging(0.848) TCGA-FW-A3R5-06 17 30526555 30526555 C T RHOT1 Silent p.F362F 0.39 TCGA-FW-A3R5-06 17 30648242 30648242 C T RHBDL3 Silent p.P403P 0.51 TCGA-FW-A3R5-06 17 30648243 30648243 C T RHBDL3 Missense_Mutation p.P404S 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 30688494 30688494 C T ZNF207 Missense_Mutation p.H187Y 0.45 tolerated(1) possibly_damaging(0.607) TCGA-FW-A3R5-06 17 31261321 31261321 C T TMEM98 Silent p.S92S 0.12 TCGA-FW-A3R5-06 17 31324017 31324017 C T SPACA3 Missense_Mutation p.S167L 0.40 deleterious(0) benign(0.2) TCGA-FW-A3R5-06 17 3144180 3144180 C T OR1D4 RNA 0.28 TCGA-FW-A3R5-06 17 3181574 3181574 G A OR3A2 Missense_Mutation p.P219L 0.16 deleterious(0.03) possibly_damaging(0.673) TCGA-FW-A3R5-06 17 3182142 3182142 C T OR3A2 Missense_Mutation p.E30K 0.38 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 17 32483179 32483179 C T ASIC2 Missense_Mutation p.D125N 0.37 tolerated(0.52) benign(0) TCGA-FW-A3R5-06 17 32483453 32483453 G A ASIC2 Silent p.F33F 0.43 TCGA-FW-A3R5-06 17 32583890 32583890 C T CCL2 3'UTR 0.33 TCGA-FW-A3R5-06 17 32647341 32647341 C T CCL8 Missense_Mutation p.P44S 0.17 tolerated(0.3) benign(0.018) TCGA-FW-A3R5-06 17 32954042 32954042 C T TMEM132E Missense_Mutation p.P232S 0.20 tolerated(0.34) benign(0.001) TCGA-FW-A3R5-06 17 33266229 33266229 G A CCT6B Missense_Mutation p.R396C 0.39 deleterious(0.02) possibly_damaging(0.893) TCGA-FW-A3R5-06 17 3336350 3336350 C T OR1E2 Silent p.G262G 0.16 TCGA-FW-A3R5-06 17 3346535 3346535 G A SPATA22 Missense_Mutation p.P278L 0.38 tolerated(0.07) benign(0.244) TCGA-FW-A3R5-06 17 33495271 33495271 C T UNC45B Missense_Mutation p.A448V 0.54 deleterious(0.02) probably_damaging(0.948) TCGA-FW-A3R5-06 17 33507692 33507692 G A UNC45B Silent p.K792K 0.31 TCGA-FW-A3R5-06 17 33520385 33520385 C T SLC35G3 Silent p.G314G 0.39 TCGA-FW-A3R5-06 17 33520541 33520541 G A SLC35G3 Silent p.L262L 0.29 TCGA-FW-A3R5-06 17 33521168 33521168 G A SLC35G3 Silent p.F53F 0.42 TCGA-FW-A3R5-06 17 33679260 33679260 C T SLFN11 3'UTR 0.57 TCGA-FW-A3R5-06 17 33690158 33690158 G A SLFN11 Silent p.F223F 0.15 TCGA-FW-A3R5-06 17 33690487 33690487 G A SLFN11 Missense_Mutation p.P114S 0.14 tolerated(0.44) benign(0.005) TCGA-FW-A3R5-06 17 33690528 33690528 C T SLFN11 Missense_Mutation p.G100E 0.24 tolerated(0.18) benign(0.181) TCGA-FW-A3R5-06 17 33690654 33690654 C T SLFN11 Missense_Mutation p.G58E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 33768033 33768033 C T SLFN13 Missense_Mutation p.G759R 0.38 tolerated(0.48) benign(0.408) TCGA-FW-A3R5-06 17 34067503 34067503 G A RASL10B Missense_Mutation p.D98N 0.37 deleterious(0.01) probably_damaging(0.949) TCGA-FW-A3R5-06 17 34068188 34068188 C T RASL10B Missense_Mutation p.S159L 0.36 deleterious(0) benign(0.373) TCGA-FW-A3R5-06 17 34079764 34079764 C T GAS2L2 Missense_Mutation p.E36K 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 34235552 34235552 G A AC015849.16 RNA 0.34 TCGA-FW-A3R5-06 17 34235964 34235964 G A AC015849.16 RNA 0.41 TCGA-FW-A3R5-06 17 3430213 3430213 G A TRPV3 Silent p.A504A 0.62 TCGA-FW-A3R5-06 17 34328476 34328476 G A CCL15 Missense_Mutation p.S19F 0.12 deleterious(0.04) benign(0.263) TCGA-FW-A3R5-06 17 34340942 34340942 C T CCL23 Nonsense_Mutation p.W48* 0.39 TCGA-FW-A3R5-06 17 34493311 34493311 G A TBC1D3B 3'UTR 0.18 TCGA-FW-A3R5-06 17 34493626 34493626 G A TBC1D3B Missense_Mutation p.P467S 0.48 deleterious_low_confidence(0.02) benign(0.417) TCGA-FW-A3R5-06 17 34497367 34497367 C T TBC1D3B Silent p.E183E 0.16 TCGA-FW-A3R5-06 17 34499318 34499318 C T TBC1D3B Missense_Mutation p.M131I 0.26 deleterious(0.01) possibly_damaging(0.61) TCGA-FW-A3R5-06 17 3458126 3458126 C T TRPV3 Missense_Mutation p.E7K 0.34 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-FW-A3R5-06 17 34590415 34590415 C T TBC1D3C Missense_Mutation p.E14K 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 17 34863731 34863731 G A MYO19 Missense_Mutation p.P422S 0.20 tolerated(0.07) possibly_damaging(0.589) TCGA-FW-A3R5-06 17 34964684 34964684 C T MRM1 Missense_Mutation p.L299F 0.42 deleterious(0) possibly_damaging(0.858) TCGA-FW-A3R5-06 17 34964690 34964690 C T MRM1 Missense_Mutation p.H301Y 0.41 tolerated(0.06) benign(0.062) TCGA-FW-A3R5-06 17 35297980 35297980 G A LHX1 Silent p.E157E 0.35 TCGA-FW-A3R5-06 17 35300245 35300245 C T LHX1 Silent p.I346I 0.50 TCGA-FW-A3R5-06 17 35631136 35631136 G A ACACA Missense_Mutation p.P319L 0.36 deleterious(0.01) benign(0.316) TCGA-FW-A3R5-06 17 3594945 3594945 G A P2RX5 Missense_Mutation p.P94L 0.38 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 17 3595085 3595085 C T P2RX5 Nonsense_Mutation p.W47* 0.27 TCGA-FW-A3R5-06 17 3595104 3595104 C T P2RX5 Intron 0.14 TCGA-FW-A3R5-06 17 3628755 3628755 C T GSG2 Missense_Mutation p.A509V 0.47 tolerated(0.24) possibly_damaging(0.634) TCGA-FW-A3R5-06 17 36288274 36288274 G A TBC1D3F Missense_Mutation p.M120I 0.09 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 17 3628883 3628883 C T GSG2 Missense_Mutation p.R552C 0.47 tolerated(0.08) benign(0.284) TCGA-FW-A3R5-06 17 36375119 36375119 G A RP11-1407O15.2 Silent p.F133F 0.13 TCGA-FW-A3R5-06 17 3638194 3638194 G A ITGAE Silent p.L858L 0.11 TCGA-FW-A3R5-06 17 36521282 36521282 C T SOCS7 Silent p.P350P 0.37 TCGA-FW-A3R5-06 17 3654979 3654979 C T ITGAE Missense_Mutation p.G620R 0.36 deleterious(0.02) possibly_damaging(0.567) TCGA-FW-A3R5-06 17 3655083 3655083 C T ITGAE Missense_Mutation p.G585E 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 3655168 3655168 C T ITGAE Missense_Mutation p.D557N 0.44 tolerated(0.7) benign(0.001) TCGA-FW-A3R5-06 17 3656589 3656589 C T ITGAE Missense_Mutation p.E555K 0.33 tolerated(0.55) benign(0.006) TCGA-FW-A3R5-06 17 37187885 37187885 G A CTD-2206N4.2 5'Flank 0.37 TCGA-FW-A3R5-06 17 37187987 37187987 C T CTD-2206N4.2 5'Flank 0.29 TCGA-FW-A3R5-06 17 37224179 37224179 G A PLXDC1 Missense_Mutation p.R473C 0.33 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3R5-06 17 37374290 37374290 G A STAC2 Missense_Mutation p.P76L 0.33 tolerated(0.11) probably_damaging(0.987) TCGA-FW-A3R5-06 17 37580070 37580070 G A MED1 Missense_Mutation p.P286S 0.49 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 37673727 37673727 C T CDK12 Missense_Mutation p.P961S 0.31 probably_damaging(1) TCGA-FW-A3R5-06 17 3772812 3772812 G A CAMKK1 Missense_Mutation p.S475L 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 17 37826205 37826205 G A PNMT Missense_Mutation p.E138K 0.13 tolerated(0.24) probably_damaging(0.916) TCGA-FW-A3R5-06 17 37844115 37844115 G A PGAP3 Silent p.S51S 0.36 TCGA-FW-A3R5-06 17 37871608 37871608 C T ERBB2 Silent p.I406I 0.35 TCGA-FW-A3R5-06 17 37898852 37898852 C T GRB7 Silent p.S86S 0.39 TCGA-FW-A3R5-06 17 37898880 37898880 G A GRB7 Missense_Mutation p.E96K 0.25 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 17 37922004 37922004 G A IKZF3 3'UTR 0.53 TCGA-FW-A3R5-06 17 37922226 37922226 C T IKZF3 Missense_Mutation p.M449I 0.45 tolerated(0.56) benign(0) TCGA-FW-A3R5-06 17 37922608 37922608 G A IKZF3 Missense_Mutation p.P322L 0.45 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 38024515 38024515 C T ZPBP2 5'UTR 0.43 TCGA-FW-A3R5-06 17 38062518 38062518 G A GSDMB Missense_Mutation p.S245F 0.40 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 17 38172548 38172548 C T CSF3 Silent p.I89I 0.50 TCGA-FW-A3R5-06 17 38183162 38183162 G A MED24 Silent p.T552T 0.45 TCGA-FW-A3R5-06 17 3831551 3831551 C T ATP2A3 Nonsense_Mutation p.W1017* 0.33 TCGA-FW-A3R5-06 17 38319978 38319978 A T CASC3 Nonsense_Mutation p.K344* 0.49 TCGA-FW-A3R5-06 17 38320156 38320156 C T CASC3 Missense_Mutation p.S403F 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 38320157 38320157 C T CASC3 Silent p.S403S 0.14 TCGA-FW-A3R5-06 17 38434497 38434497 C T WIPF2 3'UTR 0.37 TCGA-FW-A3R5-06 17 3844784 3844784 G A ATP2A3 Silent p.P570P 0.28 TCGA-FW-A3R5-06 17 3850757 3850757 G A ATP2A3 Silent p.T341T 0.42 TCGA-FW-A3R5-06 17 38557331 38557331 G A TOP2A Missense_Mutation p.S812F 0.54 deleterious(0) possibly_damaging(0.586) TCGA-FW-A3R5-06 17 38609376 38609376 G A IGFBP4 Silent p.R163R 0.48 TCGA-FW-A3R5-06 17 38818217 38818217 C T KRT222 Missense_Mutation p.R59Q 0.44 deleterious(0.02) benign(0.221) TCGA-FW-A3R5-06 17 38854438 38854438 C T KRT24 3'UTR 0.44 TCGA-FW-A3R5-06 17 38953243 38953243 G A KRT28 Silent p.F301F 0.29 TCGA-FW-A3R5-06 17 39092585 39092585 G A KRT23 Missense_Mutation p.R91C 0.36 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 17 39116746 39116746 G A KRT39 Missense_Mutation p.S335F 0.21 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 17 39118816 39118816 C T KRT39 Splice_Site p.X237_splice 0.31 TCGA-FW-A3R5-06 17 39122681 39122681 T A KRT39 Missense_Mutation p.Y143F 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 17 39155777 39155777 C T KRTAP3-2 3'UTR 0.61 TCGA-FW-A3R5-06 17 39240674 39240674 G A KRTAP4-7 Silent p.T72T 0.30 TCGA-FW-A3R5-06 17 39274505 39274505 C T KRTAP4-11 Silent p.Q21Q 0.27 TCGA-FW-A3R5-06 17 39341185 39341185 C T KRTAP4-1 5'UTR 0.44 TCGA-FW-A3R5-06 17 39341186 39341186 C T KRTAP4-1 5'UTR 0.44 TCGA-FW-A3R5-06 17 39406380 39406380 G A KRTAP9-4 Silent p.E136E 0.47 TCGA-FW-A3R5-06 17 39519960 39519960 C A KRT33B 3'UTR 0.40 TCGA-FW-A3R5-06 17 39521143 39521143 G A KRT33B Missense_Mutation p.R329C 0.43 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 17 39538306 39538306 C T KRT34 Missense_Mutation p.D107N 0.14 tolerated(0.1) benign(0.365) TCGA-FW-A3R5-06 17 39553606 39553606 G A KRT31 Silent p.F62F 0.38 TCGA-FW-A3R5-06 17 39566079 39566079 C T AC003958.2 RNA 0.18 TCGA-FW-A3R5-06 17 39579060 39579060 C T KRT37 Silent p.E234E 0.42 TCGA-FW-A3R5-06 17 39580838 39580838 G A KRT37 5'Flank 0.47 TCGA-FW-A3R5-06 17 39597070 39597070 C T KRT38 Missense_Mutation p.G35E 0.31 deleterious(0.01) benign(0.36) TCGA-FW-A3R5-06 17 39637034 39637034 C T KRT35 Missense_Mutation p.D106N 0.52 tolerated(0.1) possibly_damaging(0.883) TCGA-FW-A3R5-06 17 39642774 39642774 G A KRT36 Missense_Mutation p.P420S 0.44 tolerated(0.31) benign(0.048) TCGA-FW-A3R5-06 17 39680673 39680673 G A KRT19 Silent p.A260A 0.10 TCGA-FW-A3R5-06 17 39724454 39724454 C T KRT9 Missense_Mutation p.E452K 0.45 tolerated(0.2) benign(0.034) TCGA-FW-A3R5-06 17 39724502 39724502 C T KRT9 Missense_Mutation p.E436K 0.30 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 17 39777260 39777260 G A KRT17 Silent p.T306T 0.42 TCGA-FW-A3R5-06 17 39780712 39780712 G A KRT17 Missense_Mutation p.S17F 0.42 tolerated(0.75) possibly_damaging(0.831) TCGA-FW-A3R5-06 17 39872043 39872043 G A GAST Silent p.K75K 0.43 TCGA-FW-A3R5-06 17 39883338 39883338 C T HAP1 Missense_Mutation p.R445K 0.46 tolerated(0.17) possibly_damaging(0.567) TCGA-FW-A3R5-06 17 39888301 39888301 C T HAP1 Missense_Mutation p.E262K 0.38 deleterious(0.01) possibly_damaging(0.486) TCGA-FW-A3R5-06 17 39890852 39890852 C T HAP1 Missense_Mutation p.G12E 0.38 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FW-A3R5-06 17 39911877 39911877 G A JUP 3'UTR 0.33 TCGA-FW-A3R5-06 17 39913883 39913883 C T JUP Intron 0.40 TCGA-FW-A3R5-06 17 39927939 39927939 C T JUP Silent p.K56K 0.51 TCGA-FW-A3R5-06 17 39964117 39964117 G A LEPREL4 Silent p.P352P 0.58 TCGA-FW-A3R5-06 17 39969292 39969292 C T FKBP10 Silent p.F2F 0.35 TCGA-FW-A3R5-06 17 39974733 39974733 G A FKBP10 Silent p.R227R 0.33 TCGA-FW-A3R5-06 17 39974767 39974767 G A FKBP10 Missense_Mutation p.E239K 0.22 tolerated(0.08) probably_damaging(0.987) TCGA-FW-A3R5-06 17 39978641 39978641 G A FKBP10 Missense_Mutation p.R577Q 0.50 tolerated(0.38) benign(0.003) TCGA-FW-A3R5-06 17 39985108 39985108 G A NT5C3B Silent p.I167I 0.38 TCGA-FW-A3R5-06 17 40091482 40091482 C T TTC25 RNA 0.28 TCGA-FW-A3R5-06 17 40312406 40312406 C T KCNH4 Silent p.R902R 0.29 TCGA-FW-A3R5-06 17 40330368 40330368 G A KCNH4 Silent p.G146G 0.48 TCGA-FW-A3R5-06 17 40337455 40337455 G A HCRT 5'UTR 0.50 TCGA-FW-A3R5-06 17 40344692 40344692 G A GHDC Silent p.A152A 0.38 TCGA-FW-A3R5-06 17 40344693 40344693 G T GHDC Missense_Mutation p.A152D 0.38 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 17 40458231 40458231 C T STAT5A Intron 0.45 TCGA-FW-A3R5-06 17 40557273 40557273 G A PTRF Missense_Mutation p.S202L 0.43 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 17 40762196 40762196 C T TUBG1 Silent p.F40F 0.35 TCGA-FW-A3R5-06 17 40766576 40766576 C T TUBG1 Silent p.P353P 0.47 TCGA-FW-A3R5-06 17 40933038 40933038 G A WNK4 Missense_Mutation p.G108S 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-FW-A3R5-06 17 40935959 40935959 C T WNK4 Silent p.L266L 0.21 TCGA-FW-A3R5-06 17 40947690 40947690 G A WNK4 Missense_Mutation p.E1024K 0.52 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 17 40998146 40998146 C T AOC2 Silent p.L501L 0.35 TCGA-FW-A3R5-06 17 41003263 41003263 C T AOC3 5'UTR 0.33 TCGA-FW-A3R5-06 17 41003708 41003708 G A AOC3 Silent p.G116G 0.40 TCGA-FW-A3R5-06 17 41059569 41059569 G A G6PC Missense_Mutation p.A124T 0.41 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 17 41108281 41108281 G A AARSD1 Silent p.I201I 0.14 TCGA-FW-A3R5-06 17 41246011 41246011 G A BRCA1 Missense_Mutation p.H513Y 0.29 tolerated(0.12) benign(0.059) TCGA-FW-A3R5-06 17 41342735 41342735 C T NBR1 Missense_Mutation p.P269S 0.50 tolerated(0.26) benign(0.004) TCGA-FW-A3R5-06 17 41836020 41836020 C T SOST Silent p.K30K 0.47 TCGA-FW-A3R5-06 17 41907410 41907410 G A MPP3 Silent p.S96S 0.31 TCGA-FW-A3R5-06 17 42274671 42274671 G A ATXN7L3 Missense_Mutation p.A94V 0.51 deleterious(0.01) probably_damaging(0.936) TCGA-FW-A3R5-06 17 42327846 42327846 C T SLC4A1 Missense_Mutation p.E906K 0.42 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 42513902 42513902 G A GPATCH8 Missense_Mutation p.P69S 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 17 42825720 42825720 C T DBF4B Missense_Mutation p.S359F 0.31 deleterious(0.01) benign(0.156) TCGA-FW-A3R5-06 17 42881938 42881938 C T GJC1 3'UTR 0.26 TCGA-FW-A3R5-06 17 42940083 42940083 G A EFTUD2 Silent p.A535A 0.44 TCGA-FW-A3R5-06 17 42941120 42941120 G A EFTUD2 Missense_Mutation p.P439L 0.42 deleterious(0) possibly_damaging(0.827) TCGA-FW-A3R5-06 17 42989105 42989105 C T GFAP Missense_Mutation p.E281K 0.40 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 17 42992602 42992602 C T GFAP Missense_Mutation p.E85K 0.42 deleterious(0) possibly_damaging(0.802) TCGA-FW-A3R5-06 17 42992800 42992800 C T GFAP Missense_Mutation p.E19K 0.38 tolerated(0.7) possibly_damaging(0.547) TCGA-FW-A3R5-06 17 43006217 43006217 G A KIF18B Missense_Mutation p.P565S 0.42 tolerated(0.12) benign(0.161) TCGA-FW-A3R5-06 17 43012707 43012707 G A KIF18B Silent p.L131L 0.33 TCGA-FW-A3R5-06 17 43246863 43246863 G A HEXIM2 Missense_Mutation p.R183Q 0.50 tolerated(0.67) benign(0.007) TCGA-FW-A3R5-06 17 43319820 43319820 G A FMNL1 Silent p.E666E 0.40 TCGA-FW-A3R5-06 17 43322721 43322721 G A FMNL1 Missense_Mutation p.E944K 0.45 deleterious(0.01) possibly_damaging(0.906) TCGA-FW-A3R5-06 17 4337325 4337325 C T SPNS3 Silent p.S21S 0.34 TCGA-FW-A3R5-06 17 43473424 43473424 G A ARHGAP27 Silent p.L430L 0.15 TCGA-FW-A3R5-06 17 4348328 4348328 C T SPNS3 Silent p.V89V 0.30 TCGA-FW-A3R5-06 17 4356353 4356353 G A SPNS3 Silent p.G322G 0.38 TCGA-FW-A3R5-06 17 43907535 43907535 C T CRHR1 Silent p.F199F 0.41 TCGA-FW-A3R5-06 17 4391133 4391133 G A SPNS3 Missense_Mutation p.D495N 0.46 tolerated(0.16) benign(0.006) TCGA-FW-A3R5-06 17 43912144 43912144 G A CRHR1 3'UTR 0.31 TCGA-FW-A3R5-06 17 43922587 43922587 G A SPPL2C Silent p.T105T 0.19 TCGA-FW-A3R5-06 17 43923308 43923308 C T SPPL2C Missense_Mutation p.R346C 0.44 deleterious(0.03) benign(0.04) TCGA-FW-A3R5-06 17 44108899 44108899 G A KANSL1 Silent p.P1087P 0.27 TCGA-FW-A3R5-06 17 4437103 4437103 G A SPNS2 Silent p.E433E 0.14 TCGA-FW-A3R5-06 17 4445806 4445806 G A MYBBP1A Missense_Mutation p.P1014S 0.45 tolerated(0.19) possibly_damaging(0.839) TCGA-FW-A3R5-06 17 44851147 44851147 G A WNT3 Missense_Mutation p.A70V 0.43 tolerated(0.06) possibly_damaging(0.803) TCGA-FW-A3R5-06 17 4500472 4500472 G A SMTNL2 Silent p.V371V 0.42 TCGA-FW-A3R5-06 17 45299052 45299052 G A MYL4 Missense_Mutation p.M106I 0.45 deleterious(0.01) benign(0.293) TCGA-FW-A3R5-06 17 45299116 45299116 G A MYL4 Missense_Mutation p.E128K 0.44 deleterious(0.01) benign(0.194) TCGA-FW-A3R5-06 17 45361850 45361850 G A ITGB3 Missense_Mutation p.D135N 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 17 4536769 4536769 G A ALOX15 Silent p.T396T 0.53 TCGA-FW-A3R5-06 17 45384947 45384947 G A ITGB3 Missense_Mutation p.D749N 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 45412651 45412651 C T EFCAB13 Silent p.I40I 0.39 TCGA-FW-A3R5-06 17 45451937 45451937 C T EFCAB13 Missense_Mutation p.S326F 0.42 tolerated(0.76) benign(0.006) TCGA-FW-A3R5-06 17 45664637 45664637 C T NPEPPS Missense_Mutation p.S341L 0.18 tolerated(0.47) benign(0.055) TCGA-FW-A3R5-06 17 4577868 4577868 G A PELP1 Missense_Mutation p.P507S 0.21 probably_damaging(0.998) TCGA-FW-A3R5-06 17 45820503 45820503 C T TBX21 Missense_Mutation p.S238L 0.32 deleterious(0) benign(0.049) TCGA-FW-A3R5-06 17 45925633 45925633 G A SP6 Missense_Mutation p.L55F 0.33 tolerated_low_confidence(0.11) benign(0.336) TCGA-FW-A3R5-06 17 46114609 46114609 G A COPZ2 Intron 0.45 TCGA-FW-A3R5-06 17 4645066 4645066 C T ZMYND15 Missense_Mutation p.P261L 0.48 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 4648002 4648002 G A ZMYND15 Missense_Mutation p.R589K 0.40 tolerated(0.25) possibly_damaging(0.493) TCGA-FW-A3R5-06 17 4649113 4649113 G A ZMYND15 Splice_Site p.X694_splice 0.36 TCGA-FW-A3R5-06 17 46608058 46608058 G A HOXB1 Missense_Mutation p.S70L 0.26 deleterious(0.02) benign(0.439) TCGA-FW-A3R5-06 17 46620486 46620486 C T HOXB2 Missense_Mutation p.E339K 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3R5-06 17 46622298 46622298 C T HOXB2 5'UTR 0.27 TCGA-FW-A3R5-06 17 46627610 46627610 C T HOXB3 3'UTR 0.45 TCGA-FW-A3R5-06 17 46627726 46627726 G A HOXB3 Silent p.I422I 0.21 TCGA-FW-A3R5-06 17 46628458 46628458 C T HOXB3 Silent p.G178G 0.50 TCGA-FW-A3R5-06 17 46654296 46654296 G A HOXB4 Missense_Mutation p.H182Y 0.50 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 46700315 46700315 G A HOXB9 Nonsense_Mutation p.Q234* 0.07 TCGA-FW-A3R5-06 17 46805604 46805604 C T HOXB13 Missense_Mutation p.E118K 0.34 tolerated(0.05) possibly_damaging(0.794) TCGA-FW-A3R5-06 17 46805893 46805893 C T HOXB13 Silent p.A21A 0.50 TCGA-FW-A3R5-06 17 46868965 46868965 C T TTLL6 Silent p.R333R 0.50 TCGA-FW-A3R5-06 17 4688690 4688690 C T VMO1 Silent p.L192L 0.47 TCGA-FW-A3R5-06 17 47117396 47117396 C T IGF2BP1 Missense_Mutation p.S254F 0.46 tolerated(0.06) probably_damaging(0.985) TCGA-FW-A3R5-06 17 47126832 47126832 C T IGF2BP1 3'UTR 0.30 TCGA-FW-A3R5-06 17 47210392 47210392 G A B4GALNT2 Missense_Mutation p.G2E 0.31 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FW-A3R5-06 17 47219479 47219479 G A B4GALNT2 Missense_Mutation p.D160N 0.26 deleterious(0.02) possibly_damaging(0.83) TCGA-FW-A3R5-06 17 47236521 47236521 C T B4GALNT2 Silent p.F267F 0.29 TCGA-FW-A3R5-06 17 47241496 47241496 C T B4GALNT2 Silent p.L331L 0.18 TCGA-FW-A3R5-06 17 47241497 47241497 C T B4GALNT2 Missense_Mutation p.R332C 0.18 deleterious(0.01) possibly_damaging(0.477) TCGA-FW-A3R5-06 17 47247066 47247066 G A B4GALNT2 Silent p.K559K 0.17 TCGA-FW-A3R5-06 17 47247088 47247088 T C B4GALNT2 Nonstop_Mutation p.*567Qext*26 0.33 TCGA-FW-A3R5-06 17 47284190 47284190 C T GNGT2 Missense_Mutation p.D47N 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 47293917 47293917 G A ABI3 Missense_Mutation p.E48K 0.25 deleterious(0.02) possibly_damaging(0.724) TCGA-FW-A3R5-06 17 47295229 47295229 G A ABI3 Silent p.R138R 0.18 TCGA-FW-A3R5-06 17 47299583 47299583 G A ABI3 Silent p.E311E 0.27 TCGA-FW-A3R5-06 17 47390089 47390089 G A ZNF652 Missense_Mutation p.T340I 0.22 deleterious(0) possibly_damaging(0.866) TCGA-FW-A3R5-06 17 47583819 47583819 G A NGFR Missense_Mutation p.E123K 0.47 tolerated(0.43) benign(0.018) TCGA-FW-A3R5-06 17 47583854 47583854 C T NGFR Silent p.L134L 0.33 TCGA-FW-A3R5-06 17 47587925 47587925 G A NGFR Silent p.Q240Q 0.27 TCGA-FW-A3R5-06 17 4800636 4800636 C T MINK1 3'UTR 0.24 TCGA-FW-A3R5-06 17 48046801 48046802 - C DLX4 5'UTR 0.28 TCGA-FW-A3R5-06 17 48050471 48050471 C T DLX4 Silent p.S106S 0.33 TCGA-FW-A3R5-06 17 48165182 48165182 C T ITGA3 Silent p.A998A 0.39 TCGA-FW-A3R5-06 17 48174904 48174904 C T PDK2 Missense_Mutation p.P79L 0.18 deleterious(0) possibly_damaging(0.781) TCGA-FW-A3R5-06 17 48182768 48182768 C T PDK2 Silent p.F98F 0.32 TCGA-FW-A3R5-06 17 48187418 48187418 C T PDK2 Missense_Mutation p.P394L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 48191778 48191778 C T SAMD14 Silent p.E283E 0.17 TCGA-FW-A3R5-06 17 48245758 48245758 G A SGCA Missense_Mutation p.E137K 0.25 deleterious(0.01) possibly_damaging(0.573) TCGA-FW-A3R5-06 17 48266576 48266576 G A COL1A1 Missense_Mutation p.P964S 0.15 unknown(0) TCGA-FW-A3R5-06 17 48267435 48267435 G A COL1A1 Missense_Mutation p.P829L 0.31 unknown(0) TCGA-FW-A3R5-06 17 48267685 48267685 C T COL1A1 Intron 0.34 TCGA-FW-A3R5-06 17 48269841 48269841 C T COL1A1 Missense_Mutation p.E660K 0.30 unknown(0) TCGA-FW-A3R5-06 17 48275352 48275352 G A COL1A1 Silent p.G200G 0.29 TCGA-FW-A3R5-06 17 4841131 4841131 G A SLC25A11 Missense_Mutation p.P284S 0.25 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 17 48450550 48450550 C T MRPL27 5'UTR 0.18 TCGA-FW-A3R5-06 17 48457688 48457688 A C EME1 Missense_Mutation p.E467D 0.10 tolerated(0.06) benign(0.268) TCGA-FW-A3R5-06 17 48538680 48538680 C T ACSF2 Silent p.S134S 0.31 TCGA-FW-A3R5-06 17 48541212 48541212 C T ACSF2 Silent p.F360F 0.33 TCGA-FW-A3R5-06 17 48545818 48545818 G A CHAD Silent p.F119F 0.09 TCGA-FW-A3R5-06 17 48559733 48559733 C T RSAD1 Silent p.L252L 0.19 TCGA-FW-A3R5-06 17 48593948 48593948 G A MYCBPAP Missense_Mutation p.G75R 0.11 tolerated(0.13) benign(0.331) TCGA-FW-A3R5-06 17 48595010 48595010 G A MYCBPAP Missense_Mutation p.G183E 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 48596379 48596379 G A MYCBPAP Missense_Mutation p.E276K 0.26 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 17 48598515 48598515 C T MYCBPAP Missense_Mutation p.R364W 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 48603334 48603334 G A MYCBPAP Silent p.G668G 0.21 TCGA-FW-A3R5-06 17 48603616 48603616 G A MYCBPAP Silent p.E762E 0.10 TCGA-FW-A3R5-06 17 48606480 48606480 C T MYCBPAP Silent p.I928I 0.30 TCGA-FW-A3R5-06 17 48613885 48613885 G A EPN3 5'UTR 0.24 TCGA-FW-A3R5-06 17 48626319 48626319 C T SPATA20 Silent p.F170F 0.22 TCGA-FW-A3R5-06 17 48628106 48628106 C T SPATA20 Missense_Mutation p.P404L 0.28 tolerated(1) benign(0) TCGA-FW-A3R5-06 17 4864089 4864089 G A SPAG7 Missense_Mutation p.R49C 0.33 deleterious(0) possibly_damaging(0.868) TCGA-FW-A3R5-06 17 4864138 4864138 G A SPAG7 Silent p.A32A 0.29 TCGA-FW-A3R5-06 17 48650406 48650406 G A CACNA1G Missense_Mutation p.D358N 0.27 tolerated(0.07) probably_damaging(0.994) TCGA-FW-A3R5-06 17 48652918 48652918 C T CACNA1G Silent p.F385F 0.32 TCGA-FW-A3R5-06 17 48667926 48667926 C T CACNA1G Missense_Mutation p.P799L 0.14 tolerated(1) benign(0.208) TCGA-FW-A3R5-06 17 48677180 48677180 C T CACNA1G Missense_Mutation p.P1217L 0.12 tolerated(0.43) benign(0.003) TCGA-FW-A3R5-06 17 48678421 48678421 C T CACNA1G Silent p.L1267L 0.38 TCGA-FW-A3R5-06 17 48678422 48678422 C T CACNA1G Silent p.L1268L 0.38 TCGA-FW-A3R5-06 17 48683440 48683440 G A CACNA1G Intron 0.37 TCGA-FW-A3R5-06 17 48697087 48697087 C T CACNA1G Missense_Mutation p.S1942F 0.17 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 17 48703660 48703660 C T CACNA1G Missense_Mutation p.L2228F 0.26 tolerated_low_confidence(0.71) benign(0.056) TCGA-FW-A3R5-06 17 48733332 48733332 G A ABCC3 Missense_Mutation p.G62D 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 48734526 48734526 C T ABCC3 Silent p.I156I 0.30 TCGA-FW-A3R5-06 17 48736725 48736725 G A ABCC3 Missense_Mutation p.A268T 0.22 tolerated(0.66) benign(0.009) TCGA-FW-A3R5-06 17 48745123 48745123 G A ABCC3 Intron 0.19 TCGA-FW-A3R5-06 17 48745180 48745180 G A ABCC3 Intron 0.20 TCGA-FW-A3R5-06 17 48746744 48746744 G A ABCC3 Nonsense_Mutation p.W699* 0.28 TCGA-FW-A3R5-06 17 48753410 48753410 C T ABCC3 Missense_Mutation p.S1009F 0.36 deleterious(0.02) possibly_damaging(0.588) TCGA-FW-A3R5-06 17 48755478 48755478 C T ABCC3 Silent p.F1201F 0.48 TCGA-FW-A3R5-06 17 48762084 48762084 C T ABCC3 Silent p.F1376F 0.21 TCGA-FW-A3R5-06 17 48823102 48823102 G A LUC7L3 Missense_Mutation p.E239K 0.10 tolerated(0.11) unknown(0) TCGA-FW-A3R5-06 17 48917308 48917308 C T WFIKKN2 Missense_Mutation p.S220L 0.24 tolerated(0.4) benign(0.115) TCGA-FW-A3R5-06 17 48917519 48917519 G A WFIKKN2 Silent p.R290R 0.24 TCGA-FW-A3R5-06 17 48917687 48917687 C T WFIKKN2 Silent p.F346F 0.27 TCGA-FW-A3R5-06 17 48918402 48918402 C T WFIKKN2 3'UTR 0.49 TCGA-FW-A3R5-06 17 48940322 48940324 ACG CA TOB1 3'UTR 0.25 TCGA-FW-A3R5-06 17 4923295 4923295 G A KIF1C Silent p.V557V 0.62 TCGA-FW-A3R5-06 17 49708847 49708847 G A CA10 3'UTR 0.35 TCGA-FW-A3R5-06 17 49710967 49710967 G A CA10 Silent p.I278I 0.23 TCGA-FW-A3R5-06 17 49726605 49726605 G A CA10 Missense_Mutation p.S191L 0.32 tolerated(0.34) benign(0.037) TCGA-FW-A3R5-06 17 49825032 49825032 C T CA10 Silent p.G142G 0.30 TCGA-FW-A3R5-06 17 49825033 49825033 C T CA10 Missense_Mutation p.G142E 0.30 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 17 4995352 4995352 C T ZFP3 Nonsense_Mutation p.R185* 0.49 TCGA-FW-A3R5-06 17 50008373 50008373 G A CA10 Missense_Mutation p.R86C 0.25 deleterious(0.02) possibly_damaging(0.751) TCGA-FW-A3R5-06 17 50235197 50235197 G A CA10 5'UTR 0.37 TCGA-FW-A3R5-06 17 5036231 5036231 G A USP6 Silent p.T74T 0.09 TCGA-FW-A3R5-06 17 5042699 5042699 C T USP6 Missense_Mutation p.R410C 0.38 deleterious_low_confidence(0.05) benign(0) TCGA-FW-A3R5-06 17 5042876 5042876 C T USP6 Missense_Mutation p.P469S 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-FW-A3R5-06 17 51900306 51900306 C T KIF2B 5'UTR 0.33 TCGA-FW-A3R5-06 17 51901282 51901282 G A KIF2B Missense_Mutation p.M296I 0.25 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 17 51901844 51901844 G A KIF2B Missense_Mutation p.A484T 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 51902119 51902119 C T KIF2B Silent p.S575S 0.22 TCGA-FW-A3R5-06 17 51902127 51902127 G A KIF2B Missense_Mutation p.R578K 0.34 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 17 51902233 51902233 G A KIF2B Silent p.G613G 0.20 TCGA-FW-A3R5-06 17 51902356 51902356 G A KIF2B Silent p.E654E 0.18 TCGA-FW-A3R5-06 17 5241338 5241338 C T RABEP1 Missense_Mutation p.R185W 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 53120603 53120603 C T STXBP4 Missense_Mutation p.P288S 0.23 tolerated(0.34) benign(0.006) TCGA-FW-A3R5-06 17 53342917 53342917 C T HLF Silent p.S24S 0.11 TCGA-FW-A3R5-06 17 53345298 53345298 C T HLF Missense_Mutation p.P101L 0.28 tolerated(0.11) benign(0.118) TCGA-FW-A3R5-06 17 53398087 53398087 C T HLF Silent p.A245A 0.19 TCGA-FW-A3R5-06 17 53488740 53488740 G A MMD Silent p.L49L 0.14 TCGA-FW-A3R5-06 17 5436224 5436224 G A NLRP1 Missense_Mutation p.P1072S 0.15 tolerated(0.5) benign(0.006) TCGA-FW-A3R5-06 17 5436228 5436228 C T NLRP1 Silent p.T1070T 0.42 TCGA-FW-A3R5-06 17 54450144 54450144 G A ANKFN1 Missense_Mutation p.A250T 0.25 tolerated(0.47) benign(0.084) TCGA-FW-A3R5-06 17 54517740 54517740 G A ANKFN1 Missense_Mutation p.M324I 0.24 tolerated(0.56) benign(0.004) TCGA-FW-A3R5-06 17 54535276 54535276 C T ANKFN1 Missense_Mutation p.S501F 0.31 deleterious(0) probably_damaging(0.915) TCGA-FW-A3R5-06 17 54535277 54535277 C T ANKFN1 Silent p.S501S 0.31 TCGA-FW-A3R5-06 17 54554948 54554948 C T ANKFN1 Missense_Mutation p.L628F 0.30 deleterious(0.02) probably_damaging(0.916) TCGA-FW-A3R5-06 17 54672217 54672217 G A NOG Silent p.G211G 0.20 TCGA-FW-A3R5-06 17 5485338 5485338 C T NLRP1 Missense_Mutation p.D165N 0.31 tolerated(0.52) benign(0.17) TCGA-FW-A3R5-06 17 5486048 5486048 C T NLRP1 Silent p.Q130Q 0.50 TCGA-FW-A3R5-06 17 54925355 54925355 C T DGKE Nonsense_Mutation p.R273* 0.22 TCGA-FW-A3R5-06 17 54925375 54925375 G A DGKE Silent p.G279G 0.17 TCGA-FW-A3R5-06 17 54940188 54940188 C T DGKE 3'UTR 0.29 TCGA-FW-A3R5-06 17 54972922 54972922 G A TRIM25 Silent p.A408A 0.09 TCGA-FW-A3R5-06 17 55183954 55183954 C T AKAP1 Nonsense_Mutation p.Q377* 0.13 TCGA-FW-A3R5-06 17 55184358 55184358 C T AKAP1 Silent p.F511F 0.27 TCGA-FW-A3R5-06 17 55704618 55704618 C T MSI2 Silent p.G227G 0.26 TCGA-FW-A3R5-06 17 55962752 55962752 G A CUEDC1 Silent p.F58F 0.37 TCGA-FW-A3R5-06 17 56232592 56232592 C T OR4D1 Silent p.F26F 0.28 TCGA-FW-A3R5-06 17 56233058 56233058 C T OR4D1 Missense_Mutation p.P182S 0.28 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 17 56233261 56233261 G A OR4D1 Missense_Mutation p.M249I 0.12 tolerated(0.07) benign(0.012) TCGA-FW-A3R5-06 17 56271342 56271342 G A EPX Silent p.G161G 0.27 TCGA-FW-A3R5-06 17 56271348 56271348 C T EPX Silent p.S163S 0.30 TCGA-FW-A3R5-06 17 56276946 56276946 G A EPX Missense_Mutation p.R443Q 0.43 tolerated(0.48) possibly_damaging(0.589) TCGA-FW-A3R5-06 17 56277733 56277733 G A EPX Missense_Mutation p.R562Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 56324854 56324854 G A LPO Missense_Mutation p.M60I 0.23 tolerated(0.09) benign(0.007) TCGA-FW-A3R5-06 17 56342232 56342232 C T LPO Silent p.P472P 0.30 TCGA-FW-A3R5-06 17 56343630 56343630 C T LPO Missense_Mutation p.H546Y 0.08 tolerated(0.38) benign(0.1) TCGA-FW-A3R5-06 17 56345178 56345178 G A LPO Silent p.T654T 0.28 TCGA-FW-A3R5-06 17 56345295 56345295 C T LPO Silent p.F693F 0.34 TCGA-FW-A3R5-06 17 56349080 56349080 G A MPO Missense_Mutation p.R656C 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 56349081 56349081 G T MPO Silent p.G655G 0.24 TCGA-FW-A3R5-06 17 56350260 56350260 G A MPO Silent p.L547L 0.25 TCGA-FW-A3R5-06 17 56386213 56386213 G A BZRAP1 Missense_Mutation p.R1474W 0.30 deleterious(0.03) benign(0.028) TCGA-FW-A3R5-06 17 56386285 56386285 C T BZRAP1 Missense_Mutation p.G1450S 0.33 tolerated(0.45) benign(0.075) TCGA-FW-A3R5-06 17 56386606 56386606 C T BZRAP1 Missense_Mutation p.E1343K 0.31 tolerated(0.16) benign(0.194) TCGA-FW-A3R5-06 17 56386636 56386636 G A BZRAP1 Missense_Mutation p.P1333S 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 56386727 56386727 G A BZRAP1 Silent p.P1302P 0.27 TCGA-FW-A3R5-06 17 56387432 56387432 C T BZRAP1 Missense_Mutation p.E1263K 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 56387438 56387438 G A BZRAP1 Nonsense_Mutation p.Q1261* 0.37 TCGA-FW-A3R5-06 17 56387942 56387942 G A BZRAP1 Silent p.A1210A 0.27 TCGA-FW-A3R5-06 17 56388020 56388020 G A BZRAP1 Silent p.P1184P 0.27 TCGA-FW-A3R5-06 17 56400068 56400068 G A BZRAP1 Missense_Mutation p.R422C 0.32 deleterious(0.02) benign(0.014) TCGA-FW-A3R5-06 17 56403666 56403666 C T BZRAP1 Silent p.T186T 0.31 TCGA-FW-A3R5-06 17 56408651 56408651 C T BZRAP1 5'Flank 0.18 TCGA-FW-A3R5-06 17 56557593 56557593 G A HSF5 Missense_Mutation p.R196C 0.32 deleterious(0.02) probably_damaging(0.964) TCGA-FW-A3R5-06 17 56565478 56565478 G A HSF5 Missense_Mutation p.P53L 0.24 deleterious(0.01) benign(0.222) TCGA-FW-A3R5-06 17 56647797 56647797 C T TEX14 Missense_Mutation p.A1302T 0.31 tolerated(0.25) benign(0.022) TCGA-FW-A3R5-06 17 56663166 56663166 G A TEX14 Silent p.F1028F 0.35 TCGA-FW-A3R5-06 17 56663310 56663310 C T TEX14 Silent p.R980R 0.33 TCGA-FW-A3R5-06 17 56833317 56833317 C T PPM1E 5'UTR 0.21 TCGA-FW-A3R5-06 17 57043060 57043060 G A PPM1E Missense_Mutation p.E197K 0.28 deleterious(0.03) possibly_damaging(0.625) TCGA-FW-A3R5-06 17 57057430 57057430 G A PPM1E Missense_Mutation p.G436S 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 57148260 57148260 G A TRIM37 Missense_Mutation p.L245F 0.26 tolerated(0.08) benign(0.374) TCGA-FW-A3R5-06 17 57270872 57270872 C T PRR11 Missense_Mutation p.S141F 0.16 tolerated(0.18) benign(0.032) TCGA-FW-A3R5-06 17 57290234 57290234 C T SMG8 Missense_Mutation p.P684S 0.23 tolerated(0.47) possibly_damaging(0.491) TCGA-FW-A3R5-06 17 57643002 57643002 G A DHX40 5'UTR 0.25 TCGA-FW-A3R5-06 17 57679906 57679906 C T DHX40 Silent p.T610T 0.21 TCGA-FW-A3R5-06 17 57917358 57917358 C T VMP1 3'UTR 0.25 TCGA-FW-A3R5-06 17 58091761 58091761 C T TBC1D3P1-DHX40P1 RNA 0.22 TCGA-FW-A3R5-06 17 58148147 58148147 C T HEATR6 Missense_Mutation p.G241S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 17 58234891 58234891 G A CA4 Silent p.K124K 0.18 TCGA-FW-A3R5-06 17 58260778 58260778 G A USP32 Missense_Mutation p.R1291W 0.31 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 17 58275715 58275715 G A USP32 Missense_Mutation p.R1114W 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-FW-A3R5-06 17 58506739 58506739 C T C17orf64 Missense_Mutation p.S149L 0.22 tolerated(1) benign(0) TCGA-FW-A3R5-06 17 58511106 58511106 G A C17orf64 3'Flank 0.25 TCGA-FW-A3R5-06 17 58512655 58512655 C T C17orf64 3'Flank 0.25 TCGA-FW-A3R5-06 17 58701016 58701016 C T PPM1D Missense_Mutation p.P203S 0.34 tolerated(0.12) benign(0.053) TCGA-FW-A3R5-06 17 58734141 58734141 C T PPM1D Missense_Mutation p.S400F 0.31 tolerated(0.7) benign(0.11) TCGA-FW-A3R5-06 17 59545008 59545008 C T TBX4 Missense_Mutation p.P180L 0.26 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 17 59557575 59557575 G A TBX4 Missense_Mutation p.E306K 0.37 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 17 59668441 59668441 G A NACA2 Missense_Mutation p.S34L 0.29 deleterious(0.03) possibly_damaging(0.546) TCGA-FW-A3R5-06 17 59853806 59853806 G A BRIP1 Nonsense_Mutation p.Q685* 0.32 TCGA-FW-A3R5-06 17 59878805 59878805 G A BRIP1 Missense_Mutation p.H317Y 0.11 deleterious(0.02) possibly_damaging(0.892) TCGA-FW-A3R5-06 17 59937222 59937222 G A BRIP1 Missense_Mutation p.P47L 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 59962312 59962312 G A INTS2 Missense_Mutation p.P688L 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 59962333 59962333 G A INTS2 Missense_Mutation p.S681F 0.27 deleterious(0.05) possibly_damaging(0.667) TCGA-FW-A3R5-06 17 59971154 59971154 G A INTS2 Missense_Mutation p.S565F 0.32 deleterious(0) possibly_damaging(0.809) TCGA-FW-A3R5-06 17 60107264 60107264 G A MED13 Missense_Mutation p.H374Y 0.16 deleterious(0.05) benign(0.187) TCGA-FW-A3R5-06 17 6023659 6023659 C T WSCD1 Missense_Mutation p.S469L 0.39 deleterious(0) possibly_damaging(0.733) TCGA-FW-A3R5-06 17 60342314 60342314 G A TBC1D3P2 3'Flank 0.27 TCGA-FW-A3R5-06 17 60348365 60348365 C T TBC1D3P2 RNA 0.19 TCGA-FW-A3R5-06 17 60351455 60351455 C T TBC1D3P2 RNA 0.20 TCGA-FW-A3R5-06 17 60493656 60493656 G A EFCAB3 Missense_Mutation p.R480K 0.24 tolerated(0.11) probably_damaging(0.98) TCGA-FW-A3R5-06 17 60631029 60631029 C T TLK2 Silent p.D211D 0.22 TCGA-FW-A3R5-06 17 60741964 60741964 G A MRC2 Silent p.Q58Q 0.27 TCGA-FW-A3R5-06 17 60741965 60741965 G A MRC2 Missense_Mutation p.G59S 0.26 tolerated(0.17) benign(0.027) TCGA-FW-A3R5-06 17 60749489 60749489 G A MRC2 Silent p.E479E 0.30 TCGA-FW-A3R5-06 17 60753853 60753853 G A MRC2 Missense_Mutation p.D599N 0.30 deleterious(0.01) probably_damaging(0.912) TCGA-FW-A3R5-06 17 60754776 60754776 C T MRC2 Missense_Mutation p.P661S 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 17 60757792 60757792 G A MRC2 Silent p.R817R 0.24 TCGA-FW-A3R5-06 17 60758262 60758262 G A MRC2 Missense_Mutation p.E859K 0.28 deleterious(0.05) benign(0.066) TCGA-FW-A3R5-06 17 60768077 60768077 G A MRC2 Missense_Mutation p.G1323S 0.27 tolerated(0.53) benign(0.014) TCGA-FW-A3R5-06 17 60814171 60814171 G A MARCH10 Missense_Mutation p.S353L 0.31 tolerated(0.25) benign(0.022) TCGA-FW-A3R5-06 17 60814282 60814282 C T MARCH10 Missense_Mutation p.R316K 0.26 tolerated(0.25) benign(0.064) TCGA-FW-A3R5-06 17 60814350 60814350 C T MARCH10 Silent p.E293E 0.08 TCGA-FW-A3R5-06 17 60814507 60814507 C T MARCH10 Missense_Mutation p.G241E 0.27 deleterious(0.02) benign(0.172) TCGA-FW-A3R5-06 17 61391751 61391751 C T TANC2 Missense_Mutation p.R314C 0.36 deleterious(0.03) benign(0.188) TCGA-FW-A3R5-06 17 61498026 61498026 C T TANC2 Silent p.P1561P 0.28 TCGA-FW-A3R5-06 17 61555329 61555329 C T ACE Missense_Mutation p.A96V 0.39 tolerated(0.51) benign(0.005) TCGA-FW-A3R5-06 17 61557763 61557763 G A ACE Missense_Mutation p.E241K 0.26 deleterious(0.02) possibly_damaging(0.805) TCGA-FW-A3R5-06 17 61557841 61557841 G A ACE Missense_Mutation p.G267R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 61559014 61559014 G A ACE Missense_Mutation p.G345R 0.41 tolerated(0.17) benign(0.007) TCGA-FW-A3R5-06 17 61562318 61562318 G A ACE Intron 0.33 TCGA-FW-A3R5-06 17 61568368 61568368 C T ACE Missense_Mutation p.P899S 0.25 deleterious(0.03) possibly_damaging(0.731) TCGA-FW-A3R5-06 17 61568741 61568741 C T ACE Missense_Mutation p.R971W 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 61570930 61570930 G A ACE Missense_Mutation p.E1016K 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 61574598 61574598 C T ACE Silent p.F1264F 0.31 TCGA-FW-A3R5-06 17 61611571 61611571 C T KCNH6 Missense_Mutation p.P334S 0.29 deleterious(0.04) possibly_damaging(0.893) TCGA-FW-A3R5-06 17 61621019 61621019 C T KCNH6 Missense_Mutation p.S744L 0.31 tolerated(0.15) benign(0.002) TCGA-FW-A3R5-06 17 61623180 61623180 G A KCNH6 Missense_Mutation p.E968K 0.26 deleterious_low_confidence(0.02) benign(0.008) TCGA-FW-A3R5-06 17 61660954 61660954 C T DCAF7 Intron 0.34 TCGA-FW-A3R5-06 17 61735251 61735251 C T MAP3K3 Missense_Mutation p.S153F 0.25 tolerated(0.32) benign(0.106) TCGA-FW-A3R5-06 17 61877952 61877952 C T DDX42 Missense_Mutation p.P199L 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 17 61886222 61886222 C T DDX42 Nonsense_Mutation p.R356* 0.20 TCGA-FW-A3R5-06 17 61949961 61949961 C T CSH2 Silent p.E144E 0.20 TCGA-FW-A3R5-06 17 61949998 61949998 G A CSH2 Missense_Mutation p.S132L 0.27 tolerated(0.19) benign(0.089) TCGA-FW-A3R5-06 17 61957617 61957617 G A GH2 3'UTR 0.32 TCGA-FW-A3R5-06 17 61958450 61958450 G A GH2 Missense_Mutation p.S77F 0.27 tolerated(0.09) probably_damaging(0.996) TCGA-FW-A3R5-06 17 61972439 61972439 G A CSH1 Silent p.V199V 0.08 TCGA-FW-A3R5-06 17 61972690 61972690 G A CSH1 Intron 0.32 TCGA-FW-A3R5-06 17 61987030 61987030 G A CSHL1 3'Flank 0.20 TCGA-FW-A3R5-06 17 61987389 61987389 G A CSHL1 Intron 0.27 TCGA-FW-A3R5-06 17 61987554 61987554 C T CSHL1 Missense_Mutation p.D147N 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-FW-A3R5-06 17 61987555 61987555 C T CSHL1 Silent p.K146K 0.21 TCGA-FW-A3R5-06 17 61987664 61987664 G A CSHL1 Missense_Mutation p.S110F 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 17 61988340 61988340 C T CSHL1 Intron 0.28 TCGA-FW-A3R5-06 17 61994690 61994690 C T GH1 Silent p.V211V 0.29 TCGA-FW-A3R5-06 17 62018170 62018170 C T SCN4A Silent p.G1824G 0.09 TCGA-FW-A3R5-06 17 62018171 62018171 C T SCN4A Missense_Mutation p.G1824E 0.07 tolerated_low_confidence(0.43) benign(0.001) TCGA-FW-A3R5-06 17 62018542 62018542 G A SCN4A Silent p.T1700T 0.26 TCGA-FW-A3R5-06 17 62018713 62018713 G A SCN4A Silent p.F1643F 0.23 TCGA-FW-A3R5-06 17 62018929 62018929 G A SCN4A Silent p.P1571P 0.09 TCGA-FW-A3R5-06 17 62019102 62019102 C T SCN4A Missense_Mutation p.D1514N 0.24 tolerated(0.07) benign(0.221) TCGA-FW-A3R5-06 17 62020413 62020413 G A SCN4A Missense_Mutation p.A1354V 0.37 tolerated(0.55) benign(0.001) TCGA-FW-A3R5-06 17 62026817 62026817 C T SCN4A Silent p.E975E 0.47 TCGA-FW-A3R5-06 17 62026827 62026827 G A SCN4A Missense_Mutation p.P972L 0.19 tolerated(0.23) probably_damaging(0.982) TCGA-FW-A3R5-06 17 62036634 62036634 G A SCN4A Silent p.S670S 0.27 TCGA-FW-A3R5-06 17 62041900 62041900 C T SCN4A Silent p.E460E 0.24 TCGA-FW-A3R5-06 17 62045598 62045598 C T SCN4A Missense_Mutation p.G274E 0.26 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 17 62049186 62049186 G A SCN4A Silent p.T169T 0.26 TCGA-FW-A3R5-06 17 62082464 62082464 C T ICAM2 Intron 0.26 TCGA-FW-A3R5-06 17 62082713 62082713 C T ICAM2 Missense_Mutation p.E28K 0.11 deleterious(0.03) benign(0.136) TCGA-FW-A3R5-06 17 62125259 62125259 G A ERN1 Missense_Mutation p.P830S 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 62144067 62144067 G A ERN1 Missense_Mutation p.P269L 0.35 tolerated(0.05) benign(0.382) TCGA-FW-A3R5-06 17 62265794 62265794 G A TEX2 Missense_Mutation p.P727S 0.21 tolerated(0.74) benign(0) TCGA-FW-A3R5-06 17 62291316 62291316 G A TEX2 Missense_Mutation p.P88S 0.28 tolerated_low_confidence(0.13) benign(0.011) TCGA-FW-A3R5-06 17 62487002 62487002 G A POLG2 Missense_Mutation p.P294S 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 17 62496099 62496099 G A DDX5 Missense_Mutation p.P596L 0.10 deleterious_low_confidence(0.02) benign(0.122) TCGA-FW-A3R5-06 17 62782792 62782792 G A hsa-mir-6080 5'Flank 0.19 TCGA-FW-A3R5-06 17 62796745 62796745 G A PLEKHM1P RNA 0.18 TCGA-FW-A3R5-06 17 62796874 62796874 G A PLEKHM1P RNA 0.28 TCGA-FW-A3R5-06 17 62818111 62818111 C T RNU7-115P 3'Flank 0.30 TCGA-FW-A3R5-06 17 62850659 62850659 G A LRRC37A3 3'UTR 0.33 TCGA-FW-A3R5-06 17 62855787 62855787 G A LRRC37A3 Missense_Mutation p.L1493F 0.21 tolerated(0.12) benign(0.242) TCGA-FW-A3R5-06 17 62855838 62855838 G A LRRC37A3 Nonsense_Mutation p.Q1476* 0.25 TCGA-FW-A3R5-06 17 62859106 62859106 G A LRRC37A3 Silent p.L1028L 0.30 TCGA-FW-A3R5-06 17 62859289 62859289 G A LRRC37A3 Intron 0.27 TCGA-FW-A3R5-06 17 62892697 62892697 G A LRRC37A3 Missense_Mutation p.P227S 0.10 tolerated(0.26) benign(0.005) TCGA-FW-A3R5-06 17 63173904 63173904 G A RGS9 Missense_Mutation p.E213K 0.31 tolerated(0.13) benign(0.051) TCGA-FW-A3R5-06 17 63221455 63221455 C T RGS9 Silent p.S581S 0.18 TCGA-FW-A3R5-06 17 6358570 6358570 C A PITPNM3 3'UTR 0.82 TCGA-FW-A3R5-06 17 63847976 63847976 C T CEP112 Missense_Mutation p.M780I 0.29 tolerated(0.2) benign(0.013) TCGA-FW-A3R5-06 17 6386953 6386953 G A PITPNM3 Silent p.F157F 0.33 TCGA-FW-A3R5-06 17 64212957 64212957 C T APOH Missense_Mutation p.E245K 0.30 deleterious(0.03) possibly_damaging(0.466) TCGA-FW-A3R5-06 17 64216856 64216856 G A APOH Silent p.I140I 0.29 TCGA-FW-A3R5-06 17 64222206 64222206 C T APOH Missense_Mutation p.G93E 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 64225436 64225436 C T APOH Missense_Mutation p.R21Q 0.18 deleterious(0.02) benign(0.002) TCGA-FW-A3R5-06 17 64738836 64738836 G A PRKCA Silent p.T494T 0.30 TCGA-FW-A3R5-06 17 64873464 64873464 G A CACNG5 Missense_Mutation p.G5E 0.21 tolerated(0.62) benign(0.088) TCGA-FW-A3R5-06 17 64873549 64873549 G A CACNG5 Nonsense_Mutation p.W33* 0.20 TCGA-FW-A3R5-06 17 64873562 64873562 G A CACNG5 Missense_Mutation p.E38K 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 17 64880832 64880832 G A CACNG5 Intron 0.09 TCGA-FW-A3R5-06 17 64880991 64880991 C T CACNG5 Intron 0.30 TCGA-FW-A3R5-06 17 6498355 6498355 G A KIAA0753 Missense_Mutation p.R793C 0.51 tolerated(0.11) probably_damaging(0.996) TCGA-FW-A3R5-06 17 65026653 65026653 G A CACNG4 Missense_Mutation p.E173K 0.27 tolerated(0.1) possibly_damaging(0.895) TCGA-FW-A3R5-06 17 65040977 65040977 G A CACNG1 Silent p.K67K 0.26 TCGA-FW-A3R5-06 17 65083039 65083039 G A HELZ Silent p.S1800S 0.31 TCGA-FW-A3R5-06 17 65185747 65185747 G A HELZ Silent p.T274T 0.27 TCGA-FW-A3R5-06 17 6554934 6554934 C T MED31 5'UTR 0.29 TCGA-FW-A3R5-06 17 6590866 6590866 G A SLC13A5 Silent p.H519H 0.37 TCGA-FW-A3R5-06 17 65909275 65909275 C T BPTF Missense_Mutation p.P1759S 0.24 probably_damaging(0.999) TCGA-FW-A3R5-06 17 65909276 65909276 C T BPTF Missense_Mutation p.P1759L 0.24 probably_damaging(1) TCGA-FW-A3R5-06 17 6594233 6594233 C T SLC13A5 Silent p.G434G 0.46 TCGA-FW-A3R5-06 17 6594260 6594260 C T SLC13A5 Splice_Site p.X426_splice 0.47 TCGA-FW-A3R5-06 17 6599215 6599215 C T SLC13A5 Silent p.E295E 0.38 TCGA-FW-A3R5-06 17 6606396 6606396 C T SLC13A5 Silent p.R203R 0.37 TCGA-FW-A3R5-06 17 66251903 66251903 C T AMZ2 Silent p.L271L 0.33 TCGA-FW-A3R5-06 17 66339821 66339821 C T ARSG Missense_Mutation p.R99C 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 66347713 66347713 C T ARSG Intron 0.30 TCGA-FW-A3R5-06 17 6663021 6663021 C T XAF1 Missense_Mutation p.S70L 0.23 tolerated(1) benign(0) TCGA-FW-A3R5-06 17 66873806 66873806 C T ABCA8 Silent p.G1311G 0.26 TCGA-FW-A3R5-06 17 66879961 66879961 C T ABCA8 Silent p.K1186K 0.27 TCGA-FW-A3R5-06 17 66883549 66883549 G A ABCA8 Silent p.F1041F 0.20 TCGA-FW-A3R5-06 17 66914311 66914311 C T ABCA8 Missense_Mutation p.E602K 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-FW-A3R5-06 17 66928483 66928483 C T ABCA8 Missense_Mutation p.R248K 0.36 tolerated(0.35) possibly_damaging(0.654) TCGA-FW-A3R5-06 17 66929360 66929360 C T ABCA8 Nonsense_Mutation p.W173* 0.26 TCGA-FW-A3R5-06 17 66980196 66980196 C T ABCA9 Splice_Site p.X1500_splice 0.35 TCGA-FW-A3R5-06 17 67016572 67016572 G A ABCA9 Missense_Mutation p.R853C 0.30 deleterious(0.01) benign(0.337) TCGA-FW-A3R5-06 17 67028325 67028325 C T ABCA9 Missense_Mutation p.E457K 0.32 deleterious(0.05) benign(0.077) TCGA-FW-A3R5-06 17 67075029 67075029 G A ABCA6 3'UTR 0.29 TCGA-FW-A3R5-06 17 67092929 67092929 G A ABCA6 Missense_Mutation p.S1045F 0.10 tolerated(0.07) benign(0.364) TCGA-FW-A3R5-06 17 67101751 67101751 G A ABCA6 Silent p.I864I 0.16 TCGA-FW-A3R5-06 17 67109377 67109377 G A ABCA6 Missense_Mutation p.A676V 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 67124879 67124879 G A ABCA6 Missense_Mutation p.L334F 0.17 tolerated(0.13) benign(0.246) TCGA-FW-A3R5-06 17 67129918 67129918 G A ABCA6 Missense_Mutation p.H219Y 0.13 tolerated(0.07) benign(0.029) TCGA-FW-A3R5-06 17 67132350 67132350 C T ABCA6 Missense_Mutation p.E115K 0.25 tolerated(0.36) benign(0.006) TCGA-FW-A3R5-06 17 67136784 67136784 G A ABCA6 Missense_Mutation p.L21F 0.21 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 17 6716194 6716194 C T TEKT1 Missense_Mutation p.D270N 0.38 deleterious(0) benign(0.219) TCGA-FW-A3R5-06 17 67183865 67183865 G A ABCA10 Missense_Mutation p.R763C 0.27 deleterious(0) possibly_damaging(0.643) TCGA-FW-A3R5-06 17 6719205 6719205 C T TEKT1 Missense_Mutation p.G145S 0.42 deleterious(0.04) probably_damaging(0.982) TCGA-FW-A3R5-06 17 67260957 67260957 A G ABCA5 Silent p.F1078F 0.21 TCGA-FW-A3R5-06 17 67283854 67283854 G A ABCA5 Silent p.P647P 0.32 TCGA-FW-A3R5-06 17 67303082 67303082 A T ABCA5 Missense_Mutation p.V191D 0.30 deleterious(0.05) benign(0.088) TCGA-FW-A3R5-06 17 67513729 67513729 C T MAP2K6 Missense_Mutation p.P74L 0.30 deleterious(0.01) possibly_damaging(0.772) TCGA-FW-A3R5-06 17 68129141 68129141 C T KCNJ16 Missense_Mutation p.L305F 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-FW-A3R5-06 17 68171911 68171911 C T KCNJ2 Missense_Mutation p.P244L 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 17 6930397 6930397 G A BCL6B Silent p.K438K 0.24 TCGA-FW-A3R5-06 17 6931005 6931005 C T BCL6B 3'UTR 0.57 TCGA-FW-A3R5-06 17 6940077 6940077 C T SLC16A13 Silent p.F77F 0.11 TCGA-FW-A3R5-06 17 6941598 6941598 C T SLC16A13 Silent p.P157P 0.48 TCGA-FW-A3R5-06 17 6945458 6945458 G A SLC16A11 Missense_Mutation p.A348V 0.62 tolerated(0.35) benign(0.015) TCGA-FW-A3R5-06 17 6979059 6979059 C T CLEC10A Silent p.R222R 0.44 TCGA-FW-A3R5-06 17 70120479 70120479 G A SOX9 Missense_Mutation p.S494N 0.09 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 17 70120607 70120607 C T SOX9 3'UTR 0.16 TCGA-FW-A3R5-06 17 7012127 7012127 G A ASGR2 Silent p.L69L 0.51 TCGA-FW-A3R5-06 17 7076927 7076927 G A ASGR1 3'UTR 0.33 TCGA-FW-A3R5-06 17 7081883 7081883 G A ASGR1 5'UTR 0.54 TCGA-FW-A3R5-06 17 7100082 7100082 G A DLG4 Silent p.I402I 0.56 TCGA-FW-A3R5-06 17 71166148 71166148 C T SSTR2 Silent p.F230F 0.21 TCGA-FW-A3R5-06 17 71204740 71204740 G A FAM104A 3'UTR 0.32 TCGA-FW-A3R5-06 17 7122200 7122200 C T DLG4 5'UTR 0.24 TCGA-FW-A3R5-06 17 71232942 71232942 C T C17orf80 Nonsense_Mutation p.Q441* 0.31 TCGA-FW-A3R5-06 17 71281633 71281633 G A CDC42EP4 Missense_Mutation p.S336L 0.35 tolerated(0.3) benign(0) TCGA-FW-A3R5-06 17 71348651 71348651 C T SDK2 Missense_Mutation p.G1907S 0.17 tolerated(0.05) probably_damaging(1) TCGA-FW-A3R5-06 17 71391399 71391399 C T SDK2 Missense_Mutation p.E1163K 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 71394475 71394475 G A SDK2 Missense_Mutation p.P1063S 0.22 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 17 71395335 71395335 G A SDK2 Missense_Mutation p.S1022F 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 71418430 71418430 C T SDK2 Missense_Mutation p.E681K 0.31 tolerated(0.34) benign(0.188) TCGA-FW-A3R5-06 17 7186949 7186949 C T SLC2A4 Missense_Mutation p.S103F 0.34 tolerated(0.12) possibly_damaging(0.898) TCGA-FW-A3R5-06 17 72249256 72249256 C T TTYH2 Silent p.P432P 0.22 TCGA-FW-A3R5-06 17 72295967 72295967 G A DNAI2 Missense_Mutation p.E279K 0.25 deleterious(0) possibly_damaging(0.907) TCGA-FW-A3R5-06 17 72324627 72324627 C T KIF19 Missense_Mutation p.H35Y 0.21 deleterious(0.02) possibly_damaging(0.688) TCGA-FW-A3R5-06 17 72338847 72338847 G A KIF19 Missense_Mutation p.G104S 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 72340461 72340461 G A KIF19 Missense_Mutation p.E186K 0.28 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 17 72345460 72345460 G A KIF19 Silent p.Q395Q 0.40 TCGA-FW-A3R5-06 17 72346896 72346896 G A KIF19 Missense_Mutation p.R480Q 0.24 tolerated(0.11) benign(0.037) TCGA-FW-A3R5-06 17 72349019 72349019 G A KIF19 Silent p.L680L 0.26 TCGA-FW-A3R5-06 17 72350309 72350309 G A KIF19 Missense_Mutation p.E773K 0.26 deleterious(0) possibly_damaging(0.611) TCGA-FW-A3R5-06 17 72351061 72351061 C T KIF19 Silent p.L949L 0.36 TCGA-FW-A3R5-06 17 72351362 72351362 G A KIF19 Missense_Mutation p.G970S 0.16 tolerated_low_confidence(0.2) benign(0.001) TCGA-FW-A3R5-06 17 72363629 72363629 C T GPR142 5'UTR 0.19 TCGA-FW-A3R5-06 17 72363848 72363848 C T GPR142 Silent p.L68L 0.14 TCGA-FW-A3R5-06 17 72367986 72367986 C T GPR142 Silent p.F212F 0.39 TCGA-FW-A3R5-06 17 72368159 72368159 C T GPR142 Missense_Mutation p.S270L 0.16 deleterious(0.05) probably_damaging(0.976) TCGA-FW-A3R5-06 17 72368614 72368614 C T GPR142 Missense_Mutation p.R422W 0.29 deleterious(0.02) possibly_damaging(0.479) TCGA-FW-A3R5-06 17 72443165 72443165 T G GPRC5C Nonstop_Mutation p.*487Gext*86 0.26 TCGA-FW-A3R5-06 17 72443185 72443185 G A GPRC5C 3'UTR 0.30 TCGA-FW-A3R5-06 17 7245290 7245290 C T ACAP1 Silent p.L45L 0.38 TCGA-FW-A3R5-06 17 72473587 72473587 C T CD300A Silent p.L182L 0.29 TCGA-FW-A3R5-06 17 72473661 72473661 G A CD300A Nonsense_Mutation p.W207* 0.14 TCGA-FW-A3R5-06 17 72518830 72518830 C T CD300LB 3'UTR 0.20 TCGA-FW-A3R5-06 17 72519695 72519695 G A CD300LB Intron 0.12 TCGA-FW-A3R5-06 17 72522000 72522000 G A CD300LB Missense_Mutation p.T123M 0.31 deleterious(0.04) benign(0.037) TCGA-FW-A3R5-06 17 72522001 72522001 T A CD300LB Missense_Mutation p.T123S 0.32 tolerated(0.51) benign(0.004) TCGA-FW-A3R5-06 17 72540779 72540779 G A CD300C Silent p.P123P 0.21 TCGA-FW-A3R5-06 17 72540995 72540995 G A CD300C Silent p.T51T 0.36 TCGA-FW-A3R5-06 17 72588686 72588686 G A C17orf77 Silent p.G167G 0.33 TCGA-FW-A3R5-06 17 72588857 72588857 C T C17orf77 Silent p.S224S 0.25 TCGA-FW-A3R5-06 17 72608772 72608772 G A CD300E 3'UTR 0.32 TCGA-FW-A3R5-06 17 72619772 72619772 C T CD300E 5'UTR 0.32 TCGA-FW-A3R5-06 17 72691159 72691159 G A CD300LF 3'UTR 0.16 TCGA-FW-A3R5-06 17 72691309 72691309 C T CD300LF Missense_Mutation p.G267S 0.32 tolerated(0.23) benign(0.064) TCGA-FW-A3R5-06 17 72740483 72740483 G A RAB37 Missense_Mutation p.D140N 0.16 tolerated(0.18) benign(0.119) TCGA-FW-A3R5-06 17 72842210 72842210 C T GRIN2C Missense_Mutation p.G782E 0.23 tolerated(0.11) probably_damaging(0.996) TCGA-FW-A3R5-06 17 72846421 72846421 G A GRIN2C Missense_Mutation p.S472F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 17 72846493 72846493 G A GRIN2C Missense_Mutation p.P448L 0.21 tolerated(0.08) benign(0.341) TCGA-FW-A3R5-06 17 72848173 72848173 G A GRIN2C Missense_Mutation p.P326L 0.25 tolerated(0.19) benign(0.002) TCGA-FW-A3R5-06 17 72862289 72862289 G A FDXR Silent p.F200F 0.08 TCGA-FW-A3R5-06 17 72862917 72862917 G A FDXR Missense_Mutation p.P130S 0.26 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 17 72878706 72878706 G A FADS6 Silent p.F164F 0.26 TCGA-FW-A3R5-06 17 72916336 72916336 G A USH1G Silent p.L199L 0.27 TCGA-FW-A3R5-06 17 72926672 72926672 G A OTOP2 Silent p.V314V 0.16 TCGA-FW-A3R5-06 17 72937552 72937552 G A OTOP3 Silent p.K46K 0.27 TCGA-FW-A3R5-06 17 72938120 72938120 C T OTOP3 Silent p.F205F 0.24 TCGA-FW-A3R5-06 17 72943142 72943142 G A OTOP3 Missense_Mutation p.G398R 0.28 tolerated(1) benign(0.303) TCGA-FW-A3R5-06 17 72943463 72943463 G A OTOP3 Missense_Mutation p.G505S 0.29 tolerated(0.5) benign(0.024) TCGA-FW-A3R5-06 17 72943464 72943464 G A OTOP3 Missense_Mutation p.G505D 0.29 tolerated(0.73) benign(0.004) TCGA-FW-A3R5-06 17 72943525 72943525 G A OTOP3 Silent p.R525R 0.24 TCGA-FW-A3R5-06 17 73096514 73096514 C T SLC16A5 Silent p.F252F 0.18 TCGA-FW-A3R5-06 17 73096880 73096880 C T SLC16A5 Silent p.G374G 0.50 TCGA-FW-A3R5-06 17 73100164 73100164 C T SLC16A5 Missense_Mutation p.A418V 0.13 tolerated(0.54) benign(0.013) TCGA-FW-A3R5-06 17 73282450 73282450 G A SLC25A19 Missense_Mutation p.P75S 0.27 tolerated(0.4) benign(0.158) TCGA-FW-A3R5-06 17 7329010 7329010 G A C17orf74 Translation_Start_Site p.M1? 0.10 tolerated(0.06) benign(0.216) TCGA-FW-A3R5-06 17 7329881 7329881 C T C17orf74 Silent p.L191L 0.46 TCGA-FW-A3R5-06 17 73322082 73322082 G A GRB2 Missense_Mutation p.P66S 0.30 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 17 73484038 73484038 C T KIAA0195 Silent p.I145I 0.21 TCGA-FW-A3R5-06 17 73484039 73484039 C T KIAA0195 Nonsense_Mutation p.Q146* 0.21 TCGA-FW-A3R5-06 17 73486830 73486830 C T KIAA0195 Silent p.V373V 0.28 TCGA-FW-A3R5-06 17 73489018 73489018 C T KIAA0195 Missense_Mutation p.P641S 0.26 deleterious(0.05) probably_damaging(0.962) TCGA-FW-A3R5-06 17 73491369 73491369 C T KIAA0195 Silent p.S911S 0.23 TCGA-FW-A3R5-06 17 73491370 73491370 C T KIAA0195 Nonsense_Mutation p.R912* 0.24 TCGA-FW-A3R5-06 17 73554625 73554625 C T LLGL2 Silent p.S96S 0.43 TCGA-FW-A3R5-06 17 73566202 73566202 C T LLGL2 Silent p.F580F 0.28 TCGA-FW-A3R5-06 17 73567066 73567066 C T LLGL2 Silent p.G687G 0.26 TCGA-FW-A3R5-06 17 73567144 73567144 C T LLGL2 Silent p.V713V 0.29 TCGA-FW-A3R5-06 17 73569208 73569208 C T LLGL2 Silent p.D858D 0.29 TCGA-FW-A3R5-06 17 73569264 73569264 C T LLGL2 Missense_Mutation p.S877L 0.26 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 17 73571021 73571021 C T LLGL2 3'UTR 0.27 TCGA-FW-A3R5-06 17 73571077 73571077 C T LLGL2 3'UTR 0.33 TCGA-FW-A3R5-06 17 73746301 73746301 G A ITGB4 Silent p.K1142K 0.16 TCGA-FW-A3R5-06 17 73748388 73748388 G A ITGB4 Silent p.E1309E 0.25 TCGA-FW-A3R5-06 17 73826224 73826224 C T UNC13D Missense_Mutation p.D947N 0.40 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 17 73832317 73832317 G A UNC13D Silent p.F470F 0.35 TCGA-FW-A3R5-06 17 73836847 73836847 G A UNC13D Missense_Mutation p.R227C 0.24 deleterious(0.01) probably_damaging(0.95) TCGA-FW-A3R5-06 17 73839265 73839265 G A UNC13D Missense_Mutation p.S79F 0.32 deleterious(0.01) possibly_damaging(0.498) TCGA-FW-A3R5-06 17 73900778 73900778 G A MRPL38 Silent p.P30P 0.29 TCGA-FW-A3R5-06 17 73949573 73949573 G A ACOX1 Silent p.I301I 0.26 TCGA-FW-A3R5-06 17 73998208 73998208 C T CDK3 Silent p.P100P 0.24 TCGA-FW-A3R5-06 17 74003240 74003240 C T EVPL Missense_Mutation p.E2016K 0.34 tolerated(0.14) benign(0.017) TCGA-FW-A3R5-06 17 74003537 74003537 C T EVPL Missense_Mutation p.V1917M 0.13 deleterious(0) possibly_damaging(0.566) TCGA-FW-A3R5-06 17 74004305 74004305 C T EVPL Missense_Mutation p.D1661N 0.27 deleterious(0.01) possibly_damaging(0.632) TCGA-FW-A3R5-06 17 74004825 74004825 C T EVPL Silent p.Q1487Q 0.33 TCGA-FW-A3R5-06 17 74005313 74005313 C T EVPL Missense_Mutation p.V1325M 0.06 deleterious(0.02) possibly_damaging(0.707) TCGA-FW-A3R5-06 17 74005674 74005674 C T EVPL Silent p.P1204P 0.30 TCGA-FW-A3R5-06 17 74005808 74005808 C T EVPL Missense_Mutation p.E1160K 0.32 deleterious(0.03) benign(0.178) TCGA-FW-A3R5-06 17 74007901 74007901 G A EVPL Silent p.A840A 0.27 TCGA-FW-A3R5-06 17 74011530 74011530 C T EVPL Splice_Site p.X630_splice 0.12 TCGA-FW-A3R5-06 17 74013916 74013916 C T EVPL Silent p.L538L 0.27 TCGA-FW-A3R5-06 17 74013982 74013982 G A EVPL Silent p.G516G 0.26 TCGA-FW-A3R5-06 17 7401451 7401451 C T POLR2A Silent p.I419I 0.39 TCGA-FW-A3R5-06 17 74015056 74015056 C T EVPL Missense_Mutation p.R408Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 17 74017761 74017761 G A EVPL Silent p.P303P 0.21 TCGA-FW-A3R5-06 17 74018548 74018548 G A EVPL Silent p.I184I 0.21 TCGA-FW-A3R5-06 17 74019403 74019403 G A EVPL Silent p.V150V 0.28 TCGA-FW-A3R5-06 17 74044000 74044000 G A SRP68 Nonsense_Mutation p.Q377* 0.23 TCGA-FW-A3R5-06 17 74078140 74078140 G A EXOC7 3'Flank 0.25 TCGA-FW-A3R5-06 17 74087233 74087233 G A EXOC7 Missense_Mutation p.P298S 0.23 tolerated(0.77) benign(0.019) TCGA-FW-A3R5-06 17 74134004 74134004 G A FOXJ1 Silent p.P232P 0.30 TCGA-FW-A3R5-06 17 74134103 74134103 G A FOXJ1 Silent p.P199P 0.32 TCGA-FW-A3R5-06 17 74151734 74151734 G A RNF157 Missense_Mutation p.S536F 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 74163761 74163761 G A RNF157 Silent p.A138A 0.20 TCGA-FW-A3R5-06 17 7416873 7416873 C T POLR2A Missense_Mutation p.P1764S 0.36 unknown(0) TCGA-FW-A3R5-06 17 74208526 74208526 C T RNF157 Silent p.E42E 0.09 TCGA-FW-A3R5-06 17 74270201 74270201 C T QRICH2 3'UTR 0.24 TCGA-FW-A3R5-06 17 74276190 74276190 G A QRICH2 Missense_Mutation p.R1392W 0.24 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 17 74276746 74276746 C T QRICH2 Missense_Mutation p.E1318K 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 17 74276776 74276776 C T QRICH2 Missense_Mutation p.E1308K 0.22 tolerated(0.12) possibly_damaging(0.908) TCGA-FW-A3R5-06 17 74276934 74276934 C T QRICH2 Missense_Mutation p.R1289Q 0.25 tolerated(0.19) benign(0.077) TCGA-FW-A3R5-06 17 74287400 74287400 G A QRICH2 Silent p.A970A 0.33 TCGA-FW-A3R5-06 17 74303606 74303606 G A QRICH2 5'UTR 0.32 TCGA-FW-A3R5-06 17 74326663 74326663 G A PRPSAP1 Missense_Mutation p.S183L 0.32 deleterious(0) probably_damaging(0.929) TCGA-FW-A3R5-06 17 74328431 74328431 G A PRPSAP1 Missense_Mutation p.P126S 0.29 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 17 74401374 74401374 G A UBE2O Silent p.I167I 0.29 TCGA-FW-A3R5-06 17 74401595 74401595 G A UBE2O Silent p.T159T 0.29 TCGA-FW-A3R5-06 17 74401596 74401596 G A UBE2O Missense_Mutation p.T159I 0.29 tolerated(0.05) benign(0.047) TCGA-FW-A3R5-06 17 74475819 74475819 G A RHBDF2 Missense_Mutation p.R119C 0.21 deleterious(0.01) probably_damaging(0.97) TCGA-FW-A3R5-06 17 74622450 74622450 C T ST6GALNAC1 Missense_Mutation p.E446K 0.28 probably_damaging(0.999) TCGA-FW-A3R5-06 17 74622451 74622451 C T ST6GALNAC1 Silent p.L445L 0.28 TCGA-FW-A3R5-06 17 74625129 74625129 C T ST6GALNAC1 Missense_Mutation p.E266K 0.31 possibly_damaging(0.881) TCGA-FW-A3R5-06 17 74720088 74720088 G A JMJD6 Silent p.L191L 0.22 TCGA-FW-A3R5-06 17 74772585 74772585 G A MFSD11 Missense_Mutation p.D383N 0.22 tolerated(0.61) benign(0.049) TCGA-FW-A3R5-06 17 74868895 74868895 C T MGAT5B Missense_Mutation p.L22F 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 17 74901259 74901259 C T MGAT5B Silent p.F244F 0.31 TCGA-FW-A3R5-06 17 74943984 74943984 A G MGAT5B Missense_Mutation p.N675D 0.23 deleterious(0.05) benign(0.278) TCGA-FW-A3R5-06 17 75085259 75085259 C A SEC14L1 5'UTR 0.33 TCGA-FW-A3R5-06 17 75210016 75210016 C T SEC14L1 Silent p.L687L 0.08 TCGA-FW-A3R5-06 17 7534655 7534655 C T SHBG Silent p.F177F 0.33 TCGA-FW-A3R5-06 17 75398191 75398191 C T SEPT9 Missense_Mutation p.P43S 0.28 tolerated_low_confidence(0.74) probably_damaging(0.998) TCGA-FW-A3R5-06 17 7572893 7572893 G A TP53 3'UTR 0.41 TCGA-FW-A3R5-06 17 7578277 7578277 G A TP53 Missense_Mutation p.P191L 0.38 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.39 tolerated(0.08) probably_damaging(0.91) TCGA-FW-A3R5-06 17 76046247 76046247 C T TNRC6C Silent p.V368V 0.23 TCGA-FW-A3R5-06 17 76089072 76089072 C T TNRC6C Silent p.S1340S 0.25 TCGA-FW-A3R5-06 17 76098601 76098601 C T TNRC6C Silent p.L1552L 0.24 TCGA-FW-A3R5-06 17 76118722 76118722 G A TMC6 Silent p.S397S 0.23 TCGA-FW-A3R5-06 17 76128477 76128477 C T TMC8 Silent p.F112F 0.28 TCGA-FW-A3R5-06 17 76137229 76137229 C T TMC8 3'UTR 0.37 TCGA-FW-A3R5-06 17 76219712 76219712 C T AC087645.1 Missense_Mutation p.E190K 0.32 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-FW-A3R5-06 17 7623214 7623214 G T DNAH2 Missense_Mutation p.E54D 0.45 benign(0.01) TCGA-FW-A3R5-06 17 7637888 7637888 C T DNAH2 Silent p.F280F 0.56 TCGA-FW-A3R5-06 17 76415793 76415793 C T PGS1 Intron 0.26 TCGA-FW-A3R5-06 17 76433779 76433779 C T DNAH17 Missense_Mutation p.E3987K 0.35 probably_damaging(0.998) TCGA-FW-A3R5-06 17 76437211 76437211 C T DNAH17 Missense_Mutation p.E3853K 0.37 benign(0.027) TCGA-FW-A3R5-06 17 76440770 76440770 G A DNAH17 Missense_Mutation p.P3801L 0.20 probably_damaging(0.999) TCGA-FW-A3R5-06 17 76449531 76449531 C T DNAH17 Missense_Mutation p.E3461K 0.13 benign(0.286) TCGA-FW-A3R5-06 17 76450701 76450701 G A DNAH17 Silent p.L3405L 0.34 TCGA-FW-A3R5-06 17 76451897 76451897 C T DNAH17 Silent p.S3319S 0.16 TCGA-FW-A3R5-06 17 76454647 76454647 C T DNAH17 Missense_Mutation p.R3312K 0.34 possibly_damaging(0.465) TCGA-FW-A3R5-06 17 76455287 76455287 G A DNAH17 Silent p.P3205P 0.25 TCGA-FW-A3R5-06 17 76464763 76464763 C T DNAH17 Missense_Mutation p.G2891D 0.22 probably_damaging(0.995) TCGA-FW-A3R5-06 17 76464764 76464764 C T DNAH17 Missense_Mutation p.G2891S 0.23 probably_damaging(0.968) TCGA-FW-A3R5-06 17 76464930 76464930 C T DNAH17 Silent p.V2835V 0.28 TCGA-FW-A3R5-06 17 76471399 76471399 C T DNAH17 Silent p.Q2810Q 0.21 TCGA-FW-A3R5-06 17 76471470 76471470 C T DNAH17 Missense_Mutation p.G2787R 0.22 probably_damaging(1) TCGA-FW-A3R5-06 17 76490701 76490701 G A DNAH17 Missense_Mutation p.R2068W 0.22 probably_damaging(0.993) TCGA-FW-A3R5-06 17 76491047 76491047 C T DNAH17 Silent p.S1998S 0.21 TCGA-FW-A3R5-06 17 76492029 76492029 C T DNAH17 Missense_Mutation p.G1930D 0.22 probably_damaging(0.995) TCGA-FW-A3R5-06 17 76498783 76498783 G A DNAH17 Intron 0.41 TCGA-FW-A3R5-06 17 76502909 76502909 C T DNAH17 Missense_Mutation p.A1562T 0.27 probably_damaging(0.96) TCGA-FW-A3R5-06 17 76503739 76503739 G A DNAH17 Missense_Mutation p.S1458F 0.12 probably_damaging(0.99) TCGA-FW-A3R5-06 17 76511007 76511007 C T DNAH17 Missense_Mutation p.R1317K 0.30 benign(0.063) TCGA-FW-A3R5-06 17 76521136 76521136 G A DNAH17 Silent p.H1269H 0.20 TCGA-FW-A3R5-06 17 76565478 76565478 C T DNAH17 Silent p.V392V 0.40 TCGA-FW-A3R5-06 17 7657689 7657689 G A DNAH2 Intron 0.33 TCGA-FW-A3R5-06 17 76705812 76705812 G A CYTH1 Missense_Mutation p.P9S 0.24 tolerated(0.1) benign(0.028) TCGA-FW-A3R5-06 17 7673916 7673916 C T DNAH2 Silent p.L1380L 0.37 TCGA-FW-A3R5-06 17 7678627 7678627 C T DNAH2 Silent p.F1596F 0.48 TCGA-FW-A3R5-06 17 76818114 76818114 G A USP36 Intron 0.38 TCGA-FW-A3R5-06 17 7691433 7691433 C T DNAH2 Silent p.F2257F 0.28 TCGA-FW-A3R5-06 17 7695297 7695297 G A DNAH2 Missense_Mutation p.M2321I 0.42 benign(0.024) TCGA-FW-A3R5-06 17 7696348 7696348 G A DNAH2 Missense_Mutation p.R2465Q 0.40 probably_damaging(0.961) TCGA-FW-A3R5-06 17 76967691 76967691 G A LGALS3BP Silent p.P575P 0.27 TCGA-FW-A3R5-06 17 7697666 7697666 C T DNAH2 Missense_Mutation p.T2555I 0.43 probably_damaging(1) TCGA-FW-A3R5-06 17 7700763 7700763 C T DNAH2 Silent p.F2665F 0.46 TCGA-FW-A3R5-06 17 7701593 7701593 C T DNAH2 Silent p.T2783T 0.46 TCGA-FW-A3R5-06 17 77040010 77040010 C T C1QTNF1 Intron 0.21 TCGA-FW-A3R5-06 17 77044191 77044191 C T C1QTNF1 3'UTR 0.20 TCGA-FW-A3R5-06 17 77078205 77078205 C T ENGASE Intron 0.25 TCGA-FW-A3R5-06 17 7708370 7708370 C T DNAH2 Missense_Mutation p.P3093L 0.48 probably_damaging(1) TCGA-FW-A3R5-06 17 7720897 7720897 C T DNAH2 Missense_Mutation p.P3347S 0.53 benign(0.028) TCGA-FW-A3R5-06 17 7749579 7749579 C T KDM6B Silent p.F140F 0.43 TCGA-FW-A3R5-06 17 7750676 7750676 C T KDM6B Missense_Mutation p.S388F 0.46 unknown(0) TCGA-FW-A3R5-06 17 7751449 7751449 C T KDM6B Missense_Mutation p.H615Y 0.48 unknown(0) TCGA-FW-A3R5-06 17 77758924 77758924 C A CBX2 3'UTR 0.53 TCGA-FW-A3R5-06 17 77769234 77769234 G A CBX8 Missense_Mutation p.L124F 0.37 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 17 77808752 77808752 G A CBX4 Missense_Mutation p.P230L 0.27 deleterious(0) possibly_damaging(0.521) TCGA-FW-A3R5-06 17 77984429 77984429 G A TBC1D16 Silent p.S103S 0.21 TCGA-FW-A3R5-06 17 78032751 78032751 C T CCDC40 Missense_Mutation p.T471I 0.30 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 17 78069181 78069181 G A CCDC40 Silent p.K984K 0.30 TCGA-FW-A3R5-06 17 78071053 78071053 G A CCDC40 Missense_Mutation p.E1011K 0.20 tolerated(0.07) benign(0.23) TCGA-FW-A3R5-06 17 78071109 78071109 C T CCDC40 Silent p.S1029S 0.16 TCGA-FW-A3R5-06 17 78071191 78071191 C T CCDC40 Missense_Mutation p.L1057F 0.17 tolerated(0.09) benign(0.035) TCGA-FW-A3R5-06 17 78073340 78073340 C T CCDC40 Silent p.I1065I 0.24 TCGA-FW-A3R5-06 17 78084749 78084749 G A GAA Missense_Mutation p.E521K 0.10 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 17 78210729 78210729 C T SLC26A11 Missense_Mutation p.R247C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 17 78223041 78223041 G A SLC26A11 Silent p.Q537Q 0.20 TCGA-FW-A3R5-06 17 78320047 78320047 C T RNF213 Missense_Mutation p.L2638F 0.23 probably_damaging(0.999) TCGA-FW-A3R5-06 17 78321852 78321852 C T RNF213 Silent p.P3239P 0.25 TCGA-FW-A3R5-06 17 78399335 78399335 C T ENDOV Missense_Mutation p.S210F 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 78444542 78444542 G A NPTX1 3'UTR 0.25 TCGA-FW-A3R5-06 17 78445594 78445594 C T NPTX1 Missense_Mutation p.E339K 0.30 deleterious(0.01) possibly_damaging(0.625) TCGA-FW-A3R5-06 17 79108233 79108233 G A AATK Missense_Mutation p.L42F 0.30 deleterious(0) possibly_damaging(0.796) TCGA-FW-A3R5-06 17 79165002 79165002 G A AZI1 Missense_Mutation p.A919V 0.31 deleterious(0.03) benign(0.409) TCGA-FW-A3R5-06 17 79165041 79165041 G A AZI1 Missense_Mutation p.A906V 0.26 tolerated(0.09) possibly_damaging(0.49) TCGA-FW-A3R5-06 17 79193782 79193782 G A AZI1 Silent p.L25L 0.25 TCGA-FW-A3R5-06 17 79203038 79203038 G A ENTHD2 Missense_Mutation p.S423F 0.53 tolerated(0.7) benign(0.01) TCGA-FW-A3R5-06 17 79414146 79414146 C T RP11-1055B8.7 Missense_Mutation p.P1083L 0.27 possibly_damaging(0.65) TCGA-FW-A3R5-06 17 79428193 79428193 C T RP11-1055B8.7 Silent p.F2168F 0.24 TCGA-FW-A3R5-06 17 79477622 79477622 C T ACTG1 3'UTR 0.15 TCGA-FW-A3R5-06 17 79495959 79495959 C T FSCN2 Silent p.H134H 0.33 TCGA-FW-A3R5-06 17 79503656 79503656 G A FSCN2 Missense_Mutation p.E396K 0.20 deleterious(0) possibly_damaging(0.838) TCGA-FW-A3R5-06 17 79514186 79514186 G A C17orf70 Missense_Mutation p.P641L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 17 79650880 79650880 C T ARL16 5'UTR 0.27 TCGA-FW-A3R5-06 17 79674064 79674064 C T SLC25A10 Silent p.L158L 0.31 TCGA-FW-A3R5-06 17 7976076 7976076 G A ALOX12B 3'UTR 0.41 TCGA-FW-A3R5-06 17 7976167 7976167 G A ALOX12B Silent p.I676I 0.10 TCGA-FW-A3R5-06 17 7976251 7976251 G A ALOX12B Silent p.F648F 0.40 TCGA-FW-A3R5-06 17 7976593 7976593 C T ALOX12B Missense_Mutation p.R600Q 0.39 tolerated(0.41) probably_damaging(0.968) TCGA-FW-A3R5-06 17 7983746 7983746 C T AC129492.6 Missense_Mutation p.L143F 0.22 unknown(0) TCGA-FW-A3R5-06 17 7984041 7984041 G A ALOX12B Silent p.F195F 0.24 TCGA-FW-A3R5-06 17 7984513 7984513 G A ALOX12B Intron 0.08 TCGA-FW-A3R5-06 17 7989454 7989454 G A ALOX12B Missense_Mutation p.P78S 0.46 tolerated(0.24) possibly_damaging(0.542) TCGA-FW-A3R5-06 17 7989509 7989509 C T ALOX12B Silent p.Q59Q 0.12 TCGA-FW-A3R5-06 17 7990769 7990769 T C ALOX12B 5'UTR 0.41 TCGA-FW-A3R5-06 17 8000065 8000065 G A ALOXE3 Silent p.I804I 0.41 TCGA-FW-A3R5-06 17 80044225 80044225 G A FASN Missense_Mutation p.P1213S 0.25 tolerated(0.3) benign(0.007) TCGA-FW-A3R5-06 17 80044325 80044325 G A FASN Silent p.P1179P 0.34 TCGA-FW-A3R5-06 17 80044354 80044354 G A FASN Missense_Mutation p.P1170S 0.26 tolerated(0.51) benign(0.004) TCGA-FW-A3R5-06 17 80045076 80045076 G A FASN Missense_Mutation p.H1093Y 0.19 tolerated(0.53) benign(0.001) TCGA-FW-A3R5-06 17 80047554 80047554 G A FASN Missense_Mutation p.P640L 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 17 80048890 80048890 G A FASN Silent p.F516F 0.25 TCGA-FW-A3R5-06 17 8007490 8007490 G A ALOXE3 Silent p.F708F 0.38 TCGA-FW-A3R5-06 17 80193902 80193902 G A SLC16A3 Silent p.V6V 0.38 TCGA-FW-A3R5-06 17 80195756 80195756 G A SLC16A3 Silent p.G370G 0.35 TCGA-FW-A3R5-06 17 80209291 80209291 G A CSNK1D Silent p.S283S 0.23 TCGA-FW-A3R5-06 17 80273126 80273126 G A CD7 3'UTR 0.43 TCGA-FW-A3R5-06 17 80282490 80282490 C T SECTM1 Missense_Mutation p.R124K 0.26 tolerated(0.08) possibly_damaging(0.801) TCGA-FW-A3R5-06 17 80285043 80285043 G A SECTM1 Missense_Mutation p.S25F 0.19 tolerated(0.22) probably_damaging(0.919) TCGA-FW-A3R5-06 17 80320289 80320289 G A TEX19 Missense_Mutation p.G88E 0.17 deleterious(0.05) benign(0.16) TCGA-FW-A3R5-06 17 80361910 80361910 G A OGFOD3 Missense_Mutation p.S201F 0.33 deleterious(0) benign(0.052) TCGA-FW-A3R5-06 17 8049772 8049772 G A PER1 Silent p.A652A 0.32 TCGA-FW-A3R5-06 17 80579640 80579640 G A WDR45B Missense_Mutation p.L155F 0.23 deleterious(0.01) benign(0.175) TCGA-FW-A3R5-06 17 80579641 80579641 G A WDR45B Silent p.S154S 0.25 TCGA-FW-A3R5-06 17 8079185 8079185 G A TMEM107 Missense_Mutation p.P55L 0.47 tolerated_low_confidence(0.33) benign(0) TCGA-FW-A3R5-06 17 8092541 8092541 G A C17orf59 Silent p.S306S 0.29 TCGA-FW-A3R5-06 17 8146431 8146431 G A CTC1 Silent p.I23I 0.39 TCGA-FW-A3R5-06 17 8218758 8218758 G A ARHGEF15 Silent p.E429E 0.33 TCGA-FW-A3R5-06 17 8221758 8221758 G A ARHGEF15 Silent p.K586K 0.49 TCGA-FW-A3R5-06 17 8272584 8272584 G A KRBA2 Silent p.S449S 0.39 TCGA-FW-A3R5-06 17 8417209 8417209 G A MYH10 Silent p.A836A 0.25 TCGA-FW-A3R5-06 17 8422107 8422107 G A MYH10 Silent p.I782I 0.47 TCGA-FW-A3R5-06 17 8656701 8656701 G A SPDYE4 Nonsense_Mutation p.R198* 0.30 TCGA-FW-A3R5-06 17 8700810 8700810 C T MFSD6L Silent p.R543R 0.56 TCGA-FW-A3R5-06 17 8808164 8808164 G A PIK3R5 Silent p.T114T 0.18 TCGA-FW-A3R5-06 17 9515755 9515755 G A WDR16 Silent p.A328A 0.41 TCGA-FW-A3R5-06 17 9674963 9674963 C T DHRS7C Missense_Mutation p.E261K 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 17 9676110 9676110 C T DHRS7C Missense_Mutation p.G235E 0.40 tolerated(1) benign(0.018) TCGA-FW-A3R5-06 17 9783763 9783763 C T GLP2R Missense_Mutation p.T405I 0.41 tolerated(0.31) benign(0.26) TCGA-FW-A3R5-06 18 10689727 10689727 G T PIEZO2 Missense_Mutation p.L2362M 0.10 deleterious(0) benign(0.15) TCGA-FW-A3R5-06 18 10689791 10689791 G A PIEZO2 Silent p.L2340L 0.23 TCGA-FW-A3R5-06 18 10696209 10696209 G A PIEZO2 Silent p.L2238L 0.28 TCGA-FW-A3R5-06 18 10697863 10697863 C T PIEZO2 Missense_Mutation p.R2124Q 0.11 tolerated(0.08) benign(0.01) TCGA-FW-A3R5-06 18 118427 118427 C T ROCK1P1 RNA 0.10 TCGA-FW-A3R5-06 18 11851674 11851674 C T CHMP1B Missense_Mutation p.A55V 0.26 deleterious(0.02) possibly_damaging(0.861) TCGA-FW-A3R5-06 18 11886545 11886545 G A MPPE1 Missense_Mutation p.P274S 0.33 tolerated(0.29) possibly_damaging(0.493) TCGA-FW-A3R5-06 18 12274239 12274239 G A CIDEA Missense_Mutation p.D160N 0.27 deleterious(0.04) benign(0.226) TCGA-FW-A3R5-06 18 12277269 12277269 G A CIDEA Silent p.%3D 0.47 TCGA-FW-A3R5-06 18 12706668 12706668 T G PSMG2 Missense_Mutation p.N59K 0.12 deleterious(0) possibly_damaging(0.643) TCGA-FW-A3R5-06 18 12785726 12785726 G A PTPN2 3'UTR 0.27 TCGA-FW-A3R5-06 18 12982560 12982560 C T SEH1L Missense_Mutation p.H269Y 0.09 tolerated(0.11) benign(0.003) TCGA-FW-A3R5-06 18 13092387 13092387 C T CEP192 Missense_Mutation p.P2039S 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 13741672 13741672 C T RNMT Missense_Mutation p.P319L 0.15 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 18 13742516 13742516 C T RNMT Missense_Mutation p.S335L 0.31 deleterious(0.01) possibly_damaging(0.752) TCGA-FW-A3R5-06 18 13746268 13746268 G C RNMT Missense_Mutation p.E397Q 0.27 deleterious(0.01) probably_damaging(0.952) TCGA-FW-A3R5-06 18 14184125 14184125 C T ANKRD20A5P Intron 0.17 TCGA-FW-A3R5-06 18 14478466 14478466 C T CXADRP3 RNA 0.44 TCGA-FW-A3R5-06 18 14479246 14479246 G A CXADRP3 RNA 0.30 TCGA-FW-A3R5-06 18 14533190 14533190 G A POTEC Missense_Mutation p.L309F 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 18 14542887 14542887 C T POTEC Missense_Mutation p.D87N 0.18 deleterious_low_confidence(0.05) benign(0.005) TCGA-FW-A3R5-06 18 14543004 14543004 C T POTEC Missense_Mutation p.D48N 0.16 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-FW-A3R5-06 18 14752664 14752664 G A ANKRD30B Silent p.R107R 0.25 TCGA-FW-A3R5-06 18 14791399 14791399 G A ANKRD30B Splice_Site p.X579_splice 0.15 TCGA-FW-A3R5-06 18 14851538 14851538 C T ANKRD30B Missense_Mutation p.L1080F 0.38 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 18 15323268 15323268 C T RNU6-721P 5'Flank 0.14 TCGA-FW-A3R5-06 18 18539819 18539819 G A ROCK1 Missense_Mutation p.S1165F 0.18 tolerated(0.7) benign(0.02) TCGA-FW-A3R5-06 18 19263551 19263551 G A ABHD3 Intron 0.20 TCGA-FW-A3R5-06 18 19751212 19751212 C T GATA6 Missense_Mutation p.P36L 0.38 deleterious_low_confidence(0.05) benign(0.001) TCGA-FW-A3R5-06 18 19995499 19995499 G A CTAGE1 3'UTR 0.29 TCGA-FW-A3R5-06 18 19995647 19995647 G A CTAGE1 Missense_Mutation p.P710S 0.24 tolerated(0.19) benign(0.177) TCGA-FW-A3R5-06 18 19995791 19995791 G A CTAGE1 Missense_Mutation p.P662S 0.28 deleterious(0.04) benign(0.183) TCGA-FW-A3R5-06 18 19995875 19995875 C T CTAGE1 Missense_Mutation p.D634N 0.27 deleterious(0.05) possibly_damaging(0.735) TCGA-FW-A3R5-06 18 19997289 19997289 C T CTAGE1 Missense_Mutation p.M162I 0.34 tolerated(0.1) benign(0.002) TCGA-FW-A3R5-06 18 20735792 20735792 C T CABLES1 Intron 0.33 TCGA-FW-A3R5-06 18 21044179 21044179 C T RIOK3 Missense_Mutation p.S112F 0.17 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 18 21053552 21053552 C T RIOK3 Silent p.I325I 0.11 TCGA-FW-A3R5-06 18 21119923 21119923 G A NPC1 Silent p.L883L 0.22 TCGA-FW-A3R5-06 18 21136298 21136298 G A NPC1 Missense_Mutation p.A412V 0.31 deleterious(0.04) benign(0.184) TCGA-FW-A3R5-06 18 21153424 21153424 A T NPC1 Missense_Mutation p.L58I 0.29 tolerated(0.32) benign(0.029) TCGA-FW-A3R5-06 18 21209887 21209887 G A ANKRD29 Missense_Mutation p.A153V 0.09 tolerated(0.09) benign(0.161) TCGA-FW-A3R5-06 18 21328024 21328024 C T LAMA3 Missense_Mutation p.H189Y 0.29 benign(0.167) TCGA-FW-A3R5-06 18 21355829 21355829 C T LAMA3 Silent p.F449F 0.24 TCGA-FW-A3R5-06 18 21402245 21402245 G A LAMA3 Silent p.G778G 0.29 TCGA-FW-A3R5-06 18 21419872 21419872 G A LAMA3 Silent p.G1105G 0.29 TCGA-FW-A3R5-06 18 21425035 21425035 G A LAMA3 Missense_Mutation p.M1222I 0.25 benign(0) TCGA-FW-A3R5-06 18 21470000 21470000 C T LAMA3 Missense_Mutation p.P1777S 0.23 probably_damaging(1) TCGA-FW-A3R5-06 18 21478756 21478756 G A LAMA3 Missense_Mutation p.G1890S 0.23 benign(0.41) TCGA-FW-A3R5-06 18 21478757 21478757 G A LAMA3 Missense_Mutation p.G1890D 0.22 benign(0.049) TCGA-FW-A3R5-06 18 21481174 21481174 G A LAMA3 Missense_Mutation p.E2030K 0.33 benign(0.1) TCGA-FW-A3R5-06 18 21489199 21489199 C T LAMA3 Silent p.I2366I 0.25 TCGA-FW-A3R5-06 18 21523896 21523896 C T LAMA3 Silent p.I3057I 0.15 TCGA-FW-A3R5-06 18 21739520 21739520 G A CABYR Missense_Mutation p.G209D 0.28 tolerated(0.1) benign(0.088) TCGA-FW-A3R5-06 18 21739707 21739707 G A CABYR Silent p.Q271Q 0.22 TCGA-FW-A3R5-06 18 21743221 21743221 G A OSBPL1A Silent p.P925P 0.29 TCGA-FW-A3R5-06 18 22040679 22040679 C T HRH4 5'UTR 0.08 TCGA-FW-A3R5-06 18 22806109 22806109 G A ZNF521 Silent p.A591A 0.32 TCGA-FW-A3R5-06 18 23612462 23612462 A G SS18 Silent p.P377P 0.18 TCGA-FW-A3R5-06 18 23615043 23615043 G A SS18 Missense_Mutation p.P341L 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 18 24436349 24436349 G A AQP4 Silent p.F266F 0.18 TCGA-FW-A3R5-06 18 24442218 24442218 C T AQP4 Silent p.G125G 0.29 TCGA-FW-A3R5-06 18 24442461 24442461 G A AQP4 Silent p.A44A 0.30 TCGA-FW-A3R5-06 18 24628466 24628466 C T CHST9 Silent p.G41G 0.22 TCGA-FW-A3R5-06 18 2538971 2538971 G A METTL4 3'UTR 0.37 TCGA-FW-A3R5-06 18 25543330 25543330 G A CDH2 Silent p.F835F 0.22 TCGA-FW-A3R5-06 18 25572670 25572670 G A CDH2 Silent p.F431F 0.27 TCGA-FW-A3R5-06 18 25585831 25585831 G T CDH2 Missense_Mutation p.P277T 0.24 tolerated(0.54) possibly_damaging(0.614) TCGA-FW-A3R5-06 18 25593852 25593852 C T CDH2 Missense_Mutation p.G65E 0.20 tolerated(0.23) benign(0.009) TCGA-FW-A3R5-06 18 2566965 2566965 C T METTL4 Missense_Mutation p.R84Q 0.25 tolerated(1) benign(0) TCGA-FW-A3R5-06 18 2769796 2769796 C T SMCHD1 Silent p.I1608I 0.31 TCGA-FW-A3R5-06 18 28576899 28576899 C T DSC3 Missense_Mutation p.G784E 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-FW-A3R5-06 18 28586965 28586965 G A DSC3 Missense_Mutation p.P599L 0.36 tolerated(0.21) benign(0.006) TCGA-FW-A3R5-06 18 28598107 28598107 C T DSC3 Missense_Mutation p.G398E 0.22 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 18 28647982 28647982 C T DSC2 Silent p.%3D 0.16 TCGA-FW-A3R5-06 18 28648063 28648063 C T DSC2 Missense_Mutation p.R875Q 0.28 tolerated(0.59) benign(0.01) TCGA-FW-A3R5-06 18 28649015 28649015 C T DSC2 Missense_Mutation p.E785K 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-FW-A3R5-06 18 28649024 28649024 C T DSC2 Missense_Mutation p.E782K 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 28650782 28650782 C T DSC2 Silent p.G720G 0.20 TCGA-FW-A3R5-06 18 28654727 28654727 G A DSC2 Missense_Mutation p.H604Y 0.32 tolerated(0.34) benign(0.189) TCGA-FW-A3R5-06 18 28654823 28654823 C T DSC2 Missense_Mutation p.D572N 0.37 deleterious(0.03) possibly_damaging(0.536) TCGA-FW-A3R5-06 18 28659848 28659848 C T DSC2 Missense_Mutation p.G543D 0.28 tolerated(0.75) probably_damaging(0.911) TCGA-FW-A3R5-06 18 28659862 28659862 C T DSC2 Silent p.E538E 0.07 TCGA-FW-A3R5-06 18 28660122 28660122 C T DSC2 Missense_Mutation p.G487E 0.30 deleterious(0.02) possibly_damaging(0.864) TCGA-FW-A3R5-06 18 28667647 28667647 C T DSC2 Missense_Mutation p.E254K 0.33 deleterious(0.05) probably_damaging(0.969) TCGA-FW-A3R5-06 18 28710500 28710500 C T DSC1 Missense_Mutation p.A888T 0.17 deleterious(0) possibly_damaging(0.873) TCGA-FW-A3R5-06 18 28710546 28710546 C T DSC1 Silent p.E872E 0.17 TCGA-FW-A3R5-06 18 28710605 28710605 C T DSC1 Missense_Mutation p.E853K 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 28711559 28711559 C T DSC1 Missense_Mutation p.E829K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 18 28714076 28714076 G A DSC1 Missense_Mutation p.R632C 0.30 deleterious(0.04) possibly_damaging(0.77) TCGA-FW-A3R5-06 18 28714584 28714584 G A DSC1 Silent p.F609F 0.15 TCGA-FW-A3R5-06 18 28722112 28722112 C T DSC1 Silent p.V370V 0.16 TCGA-FW-A3R5-06 18 28725631 28725631 G A DSC1 Silent p.F294F 0.08 TCGA-FW-A3R5-06 18 28736065 28736065 G A DSC1 Missense_Mutation p.P138S 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 28906923 28906923 C T DSG1 Silent p.A57A 0.19 TCGA-FW-A3R5-06 18 28909943 28909943 C T DSG1 Missense_Mutation p.P154L 0.18 deleterious(0.01) possibly_damaging(0.709) TCGA-FW-A3R5-06 18 28913995 28913995 C T DSG1 Nonsense_Mutation p.Q279* 0.24 TCGA-FW-A3R5-06 18 28918362 28918362 G A DSG1 Silent p.K450K 0.22 TCGA-FW-A3R5-06 18 2891892 2891892 G A EMILIN2 Silent p.T589T 0.40 TCGA-FW-A3R5-06 18 28934633 28934633 C T DSG1 Missense_Mutation p.P825L 0.29 deleterious(0.02) benign(0.025) TCGA-FW-A3R5-06 18 28934929 28934929 G A DSG1 Missense_Mutation p.E924K 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 18 28934998 28934998 C T DSG1 Missense_Mutation p.H947Y 0.28 deleterious(0) possibly_damaging(0.876) TCGA-FW-A3R5-06 18 28956820 28956820 G A DSG4 5'Flank 0.26 TCGA-FW-A3R5-06 18 28956873 28956873 G A DSG4 5'UTR 0.31 TCGA-FW-A3R5-06 18 28966722 28966722 C T DSG4 Silent p.I52I 0.07 TCGA-FW-A3R5-06 18 28968350 28968350 G A DSG4 Silent p.S79S 0.27 TCGA-FW-A3R5-06 18 28968384 28968384 G A DSG4 Missense_Mutation p.G91R 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 28968393 28968393 C T DSG4 Nonsense_Mutation p.R94* 0.19 TCGA-FW-A3R5-06 18 28971146 28971146 G A DSG4 Missense_Mutation p.D264N 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 28971156 28971156 C T DSG4 Missense_Mutation p.P267L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 28983403 28983403 G A DSG4 Missense_Mutation p.G481E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 28992873 28992873 C T DSG4 Missense_Mutation p.S832F 0.25 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 18 28993086 28993086 C T DSG4 Missense_Mutation p.T903I 0.29 tolerated(0.07) possibly_damaging(0.642) TCGA-FW-A3R5-06 18 28993181 28993181 C T DSG4 Missense_Mutation p.P935S 0.32 tolerated(1) benign(0.075) TCGA-FW-A3R5-06 18 29027828 29027828 G A DSG3 5'UTR 0.27 TCGA-FW-A3R5-06 18 29039024 29039024 G A DSG3 Missense_Mutation p.G134E 0.34 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 18 29039818 29039818 G A DSG3 Silent p.V176V 0.24 TCGA-FW-A3R5-06 18 29040886 29040886 G A DSG3 Missense_Mutation p.D259N 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 29044154 29044154 C T DSG3 Silent p.I360I 0.28 TCGA-FW-A3R5-06 18 29044228 29044228 C T DSG3 Missense_Mutation p.P385L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 29044306 29044306 C T DSG3 Missense_Mutation p.A411V 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 18 29049290 29049290 C T DSG3 Silent p.L625L 0.30 TCGA-FW-A3R5-06 18 29056049 29056049 C T DSG3 Silent p.S942S 0.22 TCGA-FW-A3R5-06 18 29104780 29104780 G A DSG2 Missense_Mutation p.G315R 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 29104781 29104781 G A DSG2 Missense_Mutation p.G315E 0.13 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 18 29121164 29121164 C T DSG2 Missense_Mutation p.L630F 0.27 deleterious(0.02) benign(0.172) TCGA-FW-A3R5-06 18 29121194 29121194 G A DSG2 Missense_Mutation p.G640S 0.27 deleterious(0.04) benign(0.181) TCGA-FW-A3R5-06 18 29122786 29122786 G A DSG2 Missense_Mutation p.E769K 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-FW-A3R5-06 18 29340392 29340392 C T SLC25A52 Missense_Mutation p.R88Q 0.32 tolerated(0.2) benign(0.033) TCGA-FW-A3R5-06 18 2940692 2940692 G A LPIN2 Silent p.S203S 0.25 TCGA-FW-A3R5-06 18 29493334 29493334 G A TRAPPC8 Nonsense_Mutation p.Q257* 0.11 TCGA-FW-A3R5-06 18 29645969 29645969 C T RNF125 Silent p.F203F 0.29 TCGA-FW-A3R5-06 18 29782870 29782870 G A MEP1B Missense_Mutation p.G89R 0.21 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 18 29787322 29787322 G A MEP1B Missense_Mutation p.G219R 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 18 29793279 29793279 G A MEP1B Missense_Mutation p.G446R 0.34 deleterious(0.04) benign(0.128) TCGA-FW-A3R5-06 18 29793298 29793298 C T MEP1B Missense_Mutation p.P452L 0.11 tolerated(0.22) benign(0.35) TCGA-FW-A3R5-06 18 29793396 29793396 G A MEP1B Missense_Mutation p.D485N 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 29800257 29800257 C T MEP1B 3'UTR 0.25 TCGA-FW-A3R5-06 18 29848108 29848108 G A GAREM Missense_Mutation p.P786L 0.35 deleterious(0) probably_damaging(0.941) TCGA-FW-A3R5-06 18 29848378 29848378 G A GAREM Missense_Mutation p.P696L 0.34 tolerated(0.1) benign(0.033) TCGA-FW-A3R5-06 18 29867071 29867071 G A GAREM Missense_Mutation p.P497S 0.32 tolerated(0.22) benign(0.005) TCGA-FW-A3R5-06 18 30091926 30091926 G A WBP11P1 RNA 0.25 TCGA-FW-A3R5-06 18 30092458 30092458 C T WBP11P1 RNA 0.34 TCGA-FW-A3R5-06 18 30092833 30092833 G A WBP11P1 RNA 0.13 TCGA-FW-A3R5-06 18 30093066 30093066 C T WBP11P1 RNA 0.31 TCGA-FW-A3R5-06 18 30093412 30093412 C T WBP11P1 RNA 0.09 TCGA-FW-A3R5-06 18 30093446 30093446 T G WBP11P1 RNA 0.36 TCGA-FW-A3R5-06 18 30093784 30093784 C T WBP11P1 RNA 0.27 TCGA-FW-A3R5-06 18 30257204 30257204 G A KLHL14 Nonsense_Mutation p.R560* 0.25 TCGA-FW-A3R5-06 18 30260457 30260457 C T KLHL14 Silent p.T448T 0.32 TCGA-FW-A3R5-06 18 30350066 30350066 G A KLHL14 Silent p.I163I 0.17 TCGA-FW-A3R5-06 18 30350440 30350440 C T KLHL14 Missense_Mutation p.A39T 0.13 tolerated(0.28) possibly_damaging(0.724) TCGA-FW-A3R5-06 18 30350522 30350522 G A KLHL14 Silent p.F11F 0.20 TCGA-FW-A3R5-06 18 30803094 30803094 G A CCDC178 Silent p.T636T 0.17 TCGA-FW-A3R5-06 18 30926222 30926222 G A CCDC178 Missense_Mutation p.S204F 0.25 tolerated(0.07) possibly_damaging(0.846) TCGA-FW-A3R5-06 18 30926323 30926323 G A CCDC178 Silent p.A170A 0.27 TCGA-FW-A3R5-06 18 30992021 30992021 G A CCDC178 Missense_Mutation p.S11F 0.25 tolerated_low_confidence(0.64) possibly_damaging(0.693) TCGA-FW-A3R5-06 18 3116432 3116432 C T MYOM1 Missense_Mutation p.R1067Q 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 18 31241586 31241586 C T ASXL3 Missense_Mutation p.S121L 0.21 benign(0.006) TCGA-FW-A3R5-06 18 31318615 31318615 C T ASXL3 Missense_Mutation p.P416L 0.30 benign(0.193) TCGA-FW-A3R5-06 18 31320253 31320253 C T ASXL3 Missense_Mutation p.S962L 0.35 possibly_damaging(0.543) TCGA-FW-A3R5-06 18 31322871 31322871 G A ASXL3 Missense_Mutation p.G1020E 0.16 probably_damaging(1) TCGA-FW-A3R5-06 18 31324936 31324936 G A ASXL3 Missense_Mutation p.M1708I 0.29 benign(0) TCGA-FW-A3R5-06 18 31325159 31325159 C T ASXL3 Nonsense_Mutation p.Q1783* 0.28 TCGA-FW-A3R5-06 18 31325546 31325546 C T ASXL3 Missense_Mutation p.H1912Y 0.18 benign(0.333) TCGA-FW-A3R5-06 18 31325800 31325800 G A ASXL3 Missense_Mutation p.M1996I 0.07 benign(0) TCGA-FW-A3R5-06 18 31325888 31325888 C T ASXL3 Missense_Mutation p.P2026S 0.37 probably_damaging(0.994) TCGA-FW-A3R5-06 18 31432838 31432838 C T NOL4 Missense_Mutation p.E629K 0.08 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 18 31463235 31463235 G A NOL4 Silent p.L566L 0.29 TCGA-FW-A3R5-06 18 31523087 31523087 G A NOL4 Missense_Mutation p.S495L 0.21 deleterious(0.01) possibly_damaging(0.835) TCGA-FW-A3R5-06 18 31538324 31538324 C T NOL4 Missense_Mutation p.G372E 0.15 tolerated(0.1) probably_damaging(0.975) TCGA-FW-A3R5-06 18 31709925 31709925 G A NOL4 Silent p.F108F 0.26 TCGA-FW-A3R5-06 18 3215001 3215001 G A MYOM1 Missense_Mutation p.S74L 0.30 tolerated_low_confidence(0.09) benign(0.077) TCGA-FW-A3R5-06 18 32400814 32400814 C T DTNA Silent p.S312S 0.09 TCGA-FW-A3R5-06 18 32459583 32459583 C T DTNA Missense_Mutation p.P601S 0.19 tolerated_low_confidence(0.15) benign(0.008) TCGA-FW-A3R5-06 18 3253251 3253251 G A MYL12A Silent p.S2S 0.20 TCGA-FW-A3R5-06 18 33060487 33060487 G A INO80C Missense_Mutation p.P102L 0.09 tolerated(0.05) benign(0.008) TCGA-FW-A3R5-06 18 33689596 33689596 G A SLC39A6 Missense_Mutation p.S743F 0.10 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 18 33785099 33785099 C T MOCOS Silent p.L360L 0.09 TCGA-FW-A3R5-06 18 33785177 33785177 C T MOCOS Nonsense_Mutation p.Q386* 0.39 TCGA-FW-A3R5-06 18 346892 346892 G A COLEC12 Silent p.L244L 0.25 TCGA-FW-A3R5-06 18 34740344 34740344 G A KIAA1328 Missense_Mutation p.G472R 0.22 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3R5-06 18 34839097 34839097 T C CELF4 Intron 0.36 TCGA-FW-A3R5-06 18 34854428 34854428 G A CELF4 Intron 0.25 TCGA-FW-A3R5-06 18 3508653 3508653 C T DLGAP1 Missense_Mutation p.G829E 0.38 tolerated(0.25) benign(0.134) TCGA-FW-A3R5-06 18 357510 357510 C T COLEC12 Missense_Mutation p.G24E 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-FW-A3R5-06 18 3581927 3581927 C T DLGAP1 Silent p.E637E 0.30 TCGA-FW-A3R5-06 18 3729188 3729188 G A DLGAP1 Missense_Mutation p.S513L 0.21 deleterious(0.03) benign(0.124) TCGA-FW-A3R5-06 18 3729195 3729195 G T DLGAP1 Missense_Mutation p.L511M 0.12 tolerated(0.23) possibly_damaging(0.569) TCGA-FW-A3R5-06 18 3845280 3845280 C T DLGAP1 Intron 0.19 TCGA-FW-A3R5-06 18 3879171 3879171 C T DLGAP1 Missense_Mutation p.D300N 0.22 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 18 3879303 3879303 C T DLGAP1 Missense_Mutation p.D256N 0.24 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 18 3879424 3879424 G A DLGAP1 Silent p.Y215Y 0.26 TCGA-FW-A3R5-06 18 3879555 3879555 C T DLGAP1 Missense_Mutation p.E172K 0.25 tolerated(0.61) benign(0.049) TCGA-FW-A3R5-06 18 39542544 39542544 C T PIK3C3 Silent p.P116P 0.21 TCGA-FW-A3R5-06 18 40503534 40503534 C T RIT2 Intron 0.26 TCGA-FW-A3R5-06 18 40503539 40503539 G A RIT2 Nonsense_Mutation p.Q142* 0.17 TCGA-FW-A3R5-06 18 40695469 40695469 C T RIT2 Missense_Mutation p.E6K 0.20 tolerated_low_confidence(0.1) benign(0.074) TCGA-FW-A3R5-06 18 40850247 40850247 G A SYT4 3'UTR 0.29 TCGA-FW-A3R5-06 18 40853713 40853713 C T SYT4 Silent p.G227G 0.23 TCGA-FW-A3R5-06 18 42529856 42529856 G A SETBP1 Missense_Mutation p.R184K 0.30 tolerated(0.16) probably_damaging(0.986) TCGA-FW-A3R5-06 18 42531877 42531877 G A SETBP1 Missense_Mutation p.E858K 0.28 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 18 42531962 42531962 C T SETBP1 Missense_Mutation p.S886L 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-FW-A3R5-06 18 43205702 43205702 G A SLC14A2 Missense_Mutation p.E69K 0.26 tolerated(0.09) benign(0.091) TCGA-FW-A3R5-06 18 43212399 43212399 C T SLC14A2 Silent p.Y202Y 0.18 TCGA-FW-A3R5-06 18 43221192 43221192 C T SLC14A2 Missense_Mutation p.P337L 0.31 deleterious(0.02) probably_damaging(0.978) TCGA-FW-A3R5-06 18 43243749 43243749 G A SLC14A2 Splice_Site p.X451_splice 0.33 TCGA-FW-A3R5-06 18 43243836 43243836 C T SLC14A2 Missense_Mutation p.H480Y 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.759) TCGA-FW-A3R5-06 18 43246125 43246125 G A SLC14A2 Missense_Mutation p.E500K 0.23 tolerated(0.16) benign(0.059) TCGA-FW-A3R5-06 18 43252892 43252892 G A SLC14A2 Missense_Mutation p.G753S 0.23 deleterious(0.05) possibly_damaging(0.504) TCGA-FW-A3R5-06 18 43310378 43310378 C T SLC14A1 Silent p.F87F 0.26 TCGA-FW-A3R5-06 18 43314241 43314241 C T SLC14A1 Missense_Mutation p.S171L 0.29 deleterious(0.01) benign(0.112) TCGA-FW-A3R5-06 18 43319611 43319611 C T SLC14A1 Silent p.L366L 0.30 TCGA-FW-A3R5-06 18 43319621 43319621 G A SLC14A1 Missense_Mutation p.G370S 0.27 tolerated(0.05) benign(0.015) TCGA-FW-A3R5-06 18 43405673 43405673 G A SIGLEC15 5'UTR 0.35 TCGA-FW-A3R5-06 18 43492321 43492321 G A EPG5 Missense_Mutation p.P1306L 0.10 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 18 43591154 43591154 C T PSTPIP2 Missense_Mutation p.R116Q 0.07 deleterious(0.03) benign(0.037) TCGA-FW-A3R5-06 18 43591196 43591196 G A PSTPIP2 Missense_Mutation p.A102V 0.26 tolerated(0.74) benign(0.224) TCGA-FW-A3R5-06 18 43678154 43678154 G A ATP5A1 Missense_Mutation p.P15L 0.24 tolerated_low_confidence(0.09) unknown(0) TCGA-FW-A3R5-06 18 43698189 43698189 C T HAUS1 Missense_Mutation p.S83F 0.24 deleterious(0) benign(0.323) TCGA-FW-A3R5-06 18 43796350 43796350 C T C18orf25 Silent p.V168V 0.21 TCGA-FW-A3R5-06 18 44013158 44013158 C T RNF165 Missense_Mutation p.P23S 0.35 tolerated_low_confidence(0.27) benign(0.417) TCGA-FW-A3R5-06 18 44015303 44015303 C T RNF165 Silent p.F143F 0.22 TCGA-FW-A3R5-06 18 44030298 44030298 C T RNF165 Missense_Mutation p.H219Y 0.16 deleterious(0.01) benign(0.444) TCGA-FW-A3R5-06 18 44036650 44036650 G A RNF165 3'UTR 0.22 TCGA-FW-A3R5-06 18 44260327 44260327 G A ST8SIA5 Missense_Mutation p.S270L 0.31 probably_damaging(0.946) TCGA-FW-A3R5-06 18 44261954 44261954 G A ST8SIA5 Missense_Mutation p.P215S 0.26 probably_damaging(1) TCGA-FW-A3R5-06 18 44272158 44272158 C T ST8SIA5 Missense_Mutation p.M95I 0.27 benign(0.001) TCGA-FW-A3R5-06 18 44559312 44559312 C T TCEB3B 3'UTR 0.28 TCGA-FW-A3R5-06 18 44559623 44559623 C T TCEB3B Silent p.E671E 0.27 TCGA-FW-A3R5-06 18 44559839 44559839 C T TCEB3B Silent p.Q599Q 0.30 TCGA-FW-A3R5-06 18 44560363 44560363 C T TCEB3B Missense_Mutation p.D425N 0.30 tolerated(0.24) benign(0.254) TCGA-FW-A3R5-06 18 44561305 44561305 C T TCEB3B Missense_Mutation p.G111S 0.25 tolerated(0.12) probably_damaging(0.957) TCGA-FW-A3R5-06 18 44561402 44561402 G A TCEB3B Silent p.L78L 0.27 TCGA-FW-A3R5-06 18 44584634 44584634 C T KATNAL2 Missense_Mutation p.P49S 0.29 deleterious(0.03) probably_damaging(0.959) TCGA-FW-A3R5-06 18 45555787 45555787 C T ZBTB7C Silent p.R568R 0.31 TCGA-FW-A3R5-06 18 45556204 45556204 G A ZBTB7C Silent p.F429F 0.10 TCGA-FW-A3R5-06 18 45566348 45566348 C T ZBTB7C Silent p.G377G 0.30 TCGA-FW-A3R5-06 18 45566491 45566491 C T ZBTB7C Missense_Mutation p.D330N 0.32 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 18 45566511 45566511 C T ZBTB7C Missense_Mutation p.G323E 0.28 deleterious(0.05) probably_damaging(0.96) TCGA-FW-A3R5-06 18 45567106 45567106 C T ZBTB7C Missense_Mutation p.E125K 0.11 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 18 45567206 45567206 G A ZBTB7C Silent p.F91F 0.29 TCGA-FW-A3R5-06 18 46145989 46145989 C T CTIF Missense_Mutation p.S18F 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 46343634 46343634 G A CTIF Missense_Mutation p.E474K 0.17 deleterious(0.02) benign(0.037) TCGA-FW-A3R5-06 18 46447991 46447991 G A SMAD7 Silent p.S344S 0.28 TCGA-FW-A3R5-06 18 47091816 47091816 A T LIPG Missense_Mutation p.D76V 0.24 deleterious(0.04) benign(0.371) TCGA-FW-A3R5-06 18 47352781 47352781 C T MYO5B 3'UTR 0.38 TCGA-FW-A3R5-06 18 47379846 47379846 T A MYO5B Missense_Mutation p.E1398D 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 18 47379867 47379867 C T MYO5B Silent p.V1391V 0.34 TCGA-FW-A3R5-06 18 47390600 47390600 C T MYO5B Missense_Mutation p.E1252K 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 18 47398567 47398567 C T MYO5B Silent p.P1191P 0.06 TCGA-FW-A3R5-06 18 47405400 47405400 C T MYO5B Missense_Mutation p.R1064Q 0.26 deleterious(0.02) probably_damaging(0.963) TCGA-FW-A3R5-06 18 47432804 47432804 C T MYO5B Missense_Mutation p.G800E 0.12 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 18 47432807 47432807 C T MYO5B Missense_Mutation p.R799Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 18 47463690 47463690 C T MYO5B Silent p.S610S 0.25 TCGA-FW-A3R5-06 18 47500803 47500803 G A MYO5B Silent p.F413F 0.37 TCGA-FW-A3R5-06 18 47500966 47500966 C T MYO5B Missense_Mutation p.S359N 0.31 tolerated(0.65) benign(0.001) TCGA-FW-A3R5-06 18 47506910 47506910 G A MYO5B Silent p.S320S 0.15 TCGA-FW-A3R5-06 18 47506911 47506911 G A MYO5B Missense_Mutation p.S320F 0.21 deleterious(0.01) possibly_damaging(0.866) TCGA-FW-A3R5-06 18 47511092 47511092 G A MYO5B Silent p.L314L 0.27 TCGA-FW-A3R5-06 18 47777887 47777887 C T CCDC11 Silent p.A247A 0.29 TCGA-FW-A3R5-06 18 47796266 47796266 C A MBD1 Intron 0.17 TCGA-FW-A3R5-06 18 47812438 47812438 G A CXXC1 Missense_Mutation p.S138L 0.25 tolerated_low_confidence(0.28) benign(0.08) TCGA-FW-A3R5-06 18 480750 480750 G A COLEC12 Silent p.F5F 0.22 TCGA-FW-A3R5-06 18 48241446 48241446 C T MAPK4 Intron 0.27 TCGA-FW-A3R5-06 18 48255634 48255634 G A MAPK4 Missense_Mutation p.D392N 0.22 deleterious_low_confidence(0) benign(0.075) TCGA-FW-A3R5-06 18 48327813 48327813 C T MRO Missense_Mutation p.G178E 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 18 48331680 48331680 G A MRO Silent p.L105L 0.14 TCGA-FW-A3R5-06 18 48335705 48335705 C T MRO Intron 0.29 TCGA-FW-A3R5-06 18 48473658 48473658 C T ME2 3'UTR 0.50 TCGA-FW-A3R5-06 18 48703761 48703761 G A MEX3C Silent p.L314L 0.11 TCGA-FW-A3R5-06 18 50278458 50278458 C T DCC Silent p.F42F 0.26 TCGA-FW-A3R5-06 18 50278595 50278595 G A DCC Missense_Mutation p.R88K 0.15 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 18 50592458 50592458 G A DCC Missense_Mutation p.E395K 0.06 deleterious(0.01) possibly_damaging(0.771) TCGA-FW-A3R5-06 18 50683749 50683749 C T DCC Missense_Mutation p.P429S 0.31 deleterious(0.02) probably_damaging(0.909) TCGA-FW-A3R5-06 18 50683792 50683792 G A DCC Missense_Mutation p.R443Q 0.20 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 18 50683829 50683829 G A DCC Silent p.A455A 0.26 TCGA-FW-A3R5-06 18 50731719 50731719 C T DCC Silent p.S569S 0.23 TCGA-FW-A3R5-06 18 50976922 50976922 G A DCC Silent p.K1094K 0.32 TCGA-FW-A3R5-06 18 51025755 51025755 G A DCC Missense_Mutation p.R1329K 0.30 tolerated(0.15) benign(0.439) TCGA-FW-A3R5-06 18 51053096 51053096 G A DCC Silent p.E1407E 0.08 TCGA-FW-A3R5-06 18 51053097 51053097 G A DCC Missense_Mutation p.E1408K 0.08 tolerated(0.11) benign(0.388) TCGA-FW-A3R5-06 18 51748695 51748695 G A MBD2 Intron 0.32 TCGA-FW-A3R5-06 18 51748765 51748765 G A MBD2 Intron 0.18 TCGA-FW-A3R5-06 18 51748766 51748766 A C MBD2 Intron 0.21 TCGA-FW-A3R5-06 18 51818291 51818291 C T POLI Silent p.T429T 0.19 TCGA-FW-A3R5-06 18 51863599 51863599 G A STARD6 Missense_Mutation p.P55S 0.25 tolerated(0.35) benign(0.22) TCGA-FW-A3R5-06 18 52262188 52262188 G A DYNAP Missense_Mutation p.D52N 0.34 tolerated(0.45) possibly_damaging(0.908) TCGA-FW-A3R5-06 18 52262300 52262300 C T DYNAP Missense_Mutation p.S89L 0.45 deleterious(0.02) possibly_damaging(0.765) TCGA-FW-A3R5-06 18 52556597 52556597 G A RAB27B Missense_Mutation p.G204R 0.29 tolerated(0.58) benign(0.02) TCGA-FW-A3R5-06 18 52571623 52571623 G T CCDC68 Missense_Mutation p.S325Y 0.21 deleterious(0) possibly_damaging(0.83) TCGA-FW-A3R5-06 18 52575039 52575039 C T CCDC68 Missense_Mutation p.V310I 0.08 tolerated(0.13) benign(0.107) TCGA-FW-A3R5-06 18 52585170 52585170 C T CCDC68 Missense_Mutation p.E283K 0.27 deleterious(0) possibly_damaging(0.789) TCGA-FW-A3R5-06 18 52586576 52586576 G A CCDC68 Missense_Mutation p.L239F 0.26 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 18 52602104 52602104 C T CCDC68 Missense_Mutation p.E183K 0.35 deleterious(0) possibly_damaging(0.869) TCGA-FW-A3R5-06 18 52604151 52604151 T A CCDC68 Missense_Mutation p.R128S 0.09 deleterious(0) possibly_damaging(0.86) TCGA-FW-A3R5-06 18 52605227 52605227 G A CCDC68 Silent p.L102L 0.09 TCGA-FW-A3R5-06 18 52901800 52901800 G A TCF4 Missense_Mutation p.P591S 0.19 tolerated(0.48) benign(0.002) TCGA-FW-A3R5-06 18 52942981 52942981 C T TCF4 Missense_Mutation p.G322S 0.12 tolerated(0.09) benign(0.418) TCGA-FW-A3R5-06 18 53017610 53017610 G A TCF4 Missense_Mutation p.P279S 0.25 deleterious(0.02) benign(0.259) TCGA-FW-A3R5-06 18 5434069 5434069 G A EPB41L3 Silent p.P219P 0.20 TCGA-FW-A3R5-06 18 54363639 54363639 C T WDR7 Silent p.F508F 0.25 TCGA-FW-A3R5-06 18 54814709 54814709 C T BOD1L2 Missense_Mutation p.R56C 0.31 deleterious(0.05) benign(0.219) TCGA-FW-A3R5-06 18 54814920 54814920 C T BOD1L2 Missense_Mutation p.P126L 0.28 deleterious(0.04) possibly_damaging(0.78) TCGA-FW-A3R5-06 18 5489039 5489039 G A EPB41L3 Silent p.F48F 0.25 TCGA-FW-A3R5-06 18 55021669 55021669 C T ST8SIA3 Silent p.F72F 0.14 TCGA-FW-A3R5-06 18 55024477 55024477 C T ST8SIA3 Silent p.P212P 0.23 TCGA-FW-A3R5-06 18 55027323 55027323 G A ST8SIA3 Missense_Mutation p.G320R 0.23 probably_damaging(1) TCGA-FW-A3R5-06 18 55027359 55027359 G A ST8SIA3 Missense_Mutation p.E332K 0.24 benign(0.001) TCGA-FW-A3R5-06 18 55143862 55143862 C T ONECUT2 Silent p.F474F 0.15 TCGA-FW-A3R5-06 18 55336670 55336670 C T ATP8B1 Silent p.K659K 0.19 TCGA-FW-A3R5-06 18 55362421 55362421 C T ATP8B1 Missense_Mutation p.G308S 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 55862662 55862662 G A NEDD4L Intron 0.25 TCGA-FW-A3R5-06 18 56196429 56196429 C T ALPK2 Missense_Mutation p.E1799K 0.12 deleterious(0) benign(0.324) TCGA-FW-A3R5-06 18 56202161 56202161 G A ALPK2 Missense_Mutation p.A1753V 0.27 tolerated(0.17) benign(0.003) TCGA-FW-A3R5-06 18 56202291 56202291 C T ALPK2 Missense_Mutation p.E1710K 0.24 deleterious(0.03) benign(0.063) TCGA-FW-A3R5-06 18 56202404 56202404 G A ALPK2 Missense_Mutation p.P1672L 0.23 tolerated(0.25) benign(0.021) TCGA-FW-A3R5-06 18 56202538 56202538 C T ALPK2 Missense_Mutation p.M1627I 0.21 tolerated(1) benign(0) TCGA-FW-A3R5-06 18 56202735 56202735 C T ALPK2 Missense_Mutation p.G1562S 0.21 tolerated(0.16) benign(0.168) TCGA-FW-A3R5-06 18 56203125 56203125 C T ALPK2 Missense_Mutation p.E1432K 0.14 deleterious(0.03) possibly_damaging(0.798) TCGA-FW-A3R5-06 18 56204425 56204425 G A ALPK2 Silent p.C998C 0.38 TCGA-FW-A3R5-06 18 56204804 56204804 G A ALPK2 Missense_Mutation p.S872L 0.11 tolerated(0.09) benign(0.004) TCGA-FW-A3R5-06 18 56246224 56246224 G A ALPK2 Missense_Mutation p.S595F 0.22 tolerated(0.06) benign(0.035) TCGA-FW-A3R5-06 18 56246777 56246777 C T ALPK2 Missense_Mutation p.G411R 0.21 tolerated(0.14) benign(0.158) TCGA-FW-A3R5-06 18 56247040 56247040 G A ALPK2 Missense_Mutation p.S323L 0.10 tolerated(0.06) possibly_damaging(0.589) TCGA-FW-A3R5-06 18 56606836 56606836 C T ZNF532 Silent p.I896I 0.07 TCGA-FW-A3R5-06 18 56939653 56939653 C T RAX Silent p.P161P 0.39 TCGA-FW-A3R5-06 18 56939814 56939814 C T RAX Missense_Mutation p.E108K 0.22 tolerated(0.06) possibly_damaging(0.495) TCGA-FW-A3R5-06 18 56939816 56939816 C T RAX Missense_Mutation p.G107E 0.21 tolerated(0.12) possibly_damaging(0.576) TCGA-FW-A3R5-06 18 57013217 57013217 G A LMAN1 Nonsense_Mutation p.Q297* 0.12 TCGA-FW-A3R5-06 18 57103257 57103257 G A CCBE1 Silent p.F368F 0.25 TCGA-FW-A3R5-06 18 57107002 57107002 G A CCBE1 Silent p.G274G 0.22 TCGA-FW-A3R5-06 18 57115230 57115230 C T CCBE1 Missense_Mutation p.G254S 0.28 tolerated(0.77) possibly_damaging(0.639) TCGA-FW-A3R5-06 18 57136731 57136731 C T CCBE1 Missense_Mutation p.R125Q 0.16 deleterious(0.04) benign(0.007) TCGA-FW-A3R5-06 18 57136782 57136782 C T CCBE1 Missense_Mutation p.R108Q 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 18 580498 580498 G A CETN1 Silent p.K30K 0.35 TCGA-FW-A3R5-06 18 580874 580874 G A CETN1 Missense_Mutation p.E156K 0.65 deleterious(0.04) probably_damaging(0.941) TCGA-FW-A3R5-06 18 580894 580894 C T CETN1 Silent p.F162F 0.30 TCGA-FW-A3R5-06 18 5890243 5890243 G A TMEM200C Missense_Mutation p.S607F 0.28 deleterious(0) possibly_damaging(0.831) TCGA-FW-A3R5-06 18 5891498 5891498 C T TMEM200C Missense_Mutation p.E189K 0.32 deleterious(0.01) probably_damaging(0.974) TCGA-FW-A3R5-06 18 5891650 5891650 C T TMEM200C Missense_Mutation p.R138Q 0.17 tolerated(0.53) benign(0.002) TCGA-FW-A3R5-06 18 5891895 5891895 G A TMEM200C Silent p.A56A 0.21 TCGA-FW-A3R5-06 18 5892017 5892017 C T TMEM200C Missense_Mutation p.D16N 0.24 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 18 59166535 59166535 G A CDH20 Silent p.R121R 0.40 TCGA-FW-A3R5-06 18 59166625 59166625 C T CDH20 Silent p.F151F 0.19 TCGA-FW-A3R5-06 18 59170239 59170239 G A CDH20 Missense_Mutation p.E239K 0.34 tolerated(0.62) possibly_damaging(0.615) TCGA-FW-A3R5-06 18 59203811 59203811 G A CDH20 Missense_Mutation p.D453N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 59221482 59221482 G A CDH20 Missense_Mutation p.D654N 0.24 tolerated(0.06) benign(0.238) TCGA-FW-A3R5-06 18 59221500 59221500 G A CDH20 Missense_Mutation p.E660K 0.23 deleterious(0) possibly_damaging(0.711) TCGA-FW-A3R5-06 18 59221646 59221646 C G CDH20 Silent p.L708L 0.21 TCGA-FW-A3R5-06 18 59947646 59947646 C T KIAA1468 Silent p.A1007A 0.16 TCGA-FW-A3R5-06 18 60027228 60027228 G A TNFRSF11A Missense_Mutation p.E188K 0.28 tolerated(0.1) benign(0.01) TCGA-FW-A3R5-06 18 60028961 60028961 C T TNFRSF11A Missense_Mutation p.S222F 0.28 tolerated(0.22) benign(0.086) TCGA-FW-A3R5-06 18 60230367 60230367 C T ZCCHC2 Missense_Mutation p.S559L 0.23 tolerated(1) benign(0) TCGA-FW-A3R5-06 18 60242078 60242078 C T ZCCHC2 Missense_Mutation p.P922S 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-FW-A3R5-06 18 60645858 60645858 C T PHLPP1 Missense_Mutation p.P1450S 0.18 tolerated(0.49) benign(0.022) TCGA-FW-A3R5-06 18 61154191 61154191 G A SERPINB5 Missense_Mutation p.E61K 0.29 tolerated(0.62) benign(0.002) TCGA-FW-A3R5-06 18 61156597 61156597 G A SERPINB5 Silent p.T108T 0.11 TCGA-FW-A3R5-06 18 61223558 61223558 G A SERPINB12 Missense_Mutation p.E56K 0.33 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 18 61226934 61226934 G A SERPINB12 Missense_Mutation p.E123K 0.08 tolerated(0.57) benign(0.41) TCGA-FW-A3R5-06 18 61231327 61231327 G A SERPINB12 Missense_Mutation p.V207M 0.07 tolerated(0.07) benign(0.309) TCGA-FW-A3R5-06 18 61232797 61232797 C T SERPINB12 Silent p.F255F 0.11 TCGA-FW-A3R5-06 18 61255990 61255990 C T SERPINB13 Missense_Mutation p.S30F 0.20 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 18 61261588 61261588 G A SERPINB13 Splice_Site p.X158_splice 0.20 TCGA-FW-A3R5-06 18 61262370 61262370 C T SERPINB13 Silent p.D241D 0.27 TCGA-FW-A3R5-06 18 61264576 61264576 C T SERPINB13 Silent p.F385F 0.32 TCGA-FW-A3R5-06 18 61305062 61305062 G A SERPINB4 Missense_Mutation p.S355L 0.28 tolerated(0.08) benign(0.339) TCGA-FW-A3R5-06 18 61310809 61310809 C T SERPINB4 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 61323156 61323156 C T SERPINB3 Missense_Mutation p.G303E 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 61323157 61323157 C T SERPINB3 Missense_Mutation p.G303R 0.16 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 18 61323175 61323175 C T SERPINB3 Missense_Mutation p.D297N 0.17 tolerated(0.5) benign(0.008) TCGA-FW-A3R5-06 18 61390475 61390475 G A SERPINB11 Missense_Mutation p.E341K 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-FW-A3R5-06 18 61463546 61463546 G A SERPINB7 Missense_Mutation p.R128Q 0.15 tolerated(0.4) probably_damaging(0.941) TCGA-FW-A3R5-06 18 61463559 61463559 G A SERPINB7 Silent p.T132T 0.25 TCGA-FW-A3R5-06 18 61465948 61465948 G A SERPINB7 Missense_Mutation p.E189K 0.31 tolerated(0.14) benign(0.041) TCGA-FW-A3R5-06 18 61471630 61471630 G A SERPINB7 Missense_Mutation p.E302K 0.32 tolerated(0.31) possibly_damaging(0.795) TCGA-FW-A3R5-06 18 61562572 61562572 C T SERPINB2 Silent p.F81F 0.34 TCGA-FW-A3R5-06 18 61564393 61564393 G A SERPINB2 Silent p.G119G 0.30 TCGA-FW-A3R5-06 18 61570356 61570356 C T SERPINB2 Silent p.F355F 0.25 TCGA-FW-A3R5-06 18 61585240 61585240 C T SERPINB10 Silent p.F92F 0.23 TCGA-FW-A3R5-06 18 61587119 61587119 G A SERPINB10 Nonsense_Mutation p.W157* 0.26 TCGA-FW-A3R5-06 18 61602272 61602272 C T SERPINB10 Silent p.N330N 0.34 TCGA-FW-A3R5-06 18 61652454 61652454 C T SERPINB8 Missense_Mutation p.P232L 0.21 deleterious(0.01) probably_damaging(0.925) TCGA-FW-A3R5-06 18 61654575 61654575 C T SERPINB8 3'UTR 0.38 TCGA-FW-A3R5-06 18 6239766 6239766 C T L3MBTL4 Missense_Mutation p.D220N 0.11 tolerated(1) probably_damaging(0.957) TCGA-FW-A3R5-06 18 6239815 6239815 C T L3MBTL4 Silent p.R203R 0.24 TCGA-FW-A3R5-06 18 6243299 6243299 G A L3MBTL4 Missense_Mutation p.P152S 0.21 deleterious(0.02) possibly_damaging(0.566) TCGA-FW-A3R5-06 18 6243300 6243300 G A L3MBTL4 Silent p.I151I 0.22 TCGA-FW-A3R5-06 18 6244522 6244522 G A L3MBTL4 Silent p.P95P 0.31 TCGA-FW-A3R5-06 18 63477198 63477198 C T CDH7 Missense_Mutation p.P157S 0.30 deleterious(0.01) possibly_damaging(0.494) TCGA-FW-A3R5-06 18 63525115 63525115 C T CDH7 Silent p.V433V 0.19 TCGA-FW-A3R5-06 18 63547747 63547747 G A CDH7 Missense_Mutation p.G659R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 63548115 63548115 G A CDH7 Silent p.E781E 0.14 TCGA-FW-A3R5-06 18 641370 641370 G A CLUL1 Silent p.A346A 0.21 TCGA-FW-A3R5-06 18 64202268 64202268 C T CDH19 Missense_Mutation p.E431K 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 65178594 65178594 C T DSEL Silent p.L1094L 0.10 TCGA-FW-A3R5-06 18 65178682 65178682 G A DSEL Missense_Mutation p.P1065L 0.33 tolerated(0.33) benign(0.353) TCGA-FW-A3R5-06 18 65180891 65180891 G A DSEL Missense_Mutation p.L329F 0.11 deleterious(0.01) possibly_damaging(0.865) TCGA-FW-A3R5-06 18 65180988 65180988 G A DSEL Silent p.S296S 0.35 TCGA-FW-A3R5-06 18 65181297 65181297 A C DSEL Missense_Mutation p.F193L 0.35 tolerated(0.08) benign(0.365) TCGA-FW-A3R5-06 18 66344136 66344136 G A TMX3 3'UTR 0.23 TCGA-FW-A3R5-06 18 66504220 66504220 C T CCDC102B Missense_Mutation p.R74C 0.15 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 18 67068437 67068437 C T DOK6 5'UTR 0.38 TCGA-FW-A3R5-06 18 67406248 67406248 G A DOK6 Missense_Mutation p.G216E 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 18 67540457 67540457 G A CD226 Silent p.L251L 0.31 TCGA-FW-A3R5-06 18 6882289 6882289 C T ARHGAP28 Silent p.L323L 0.24 TCGA-FW-A3R5-06 18 6890533 6890533 C T ARHGAP28 Silent p.L454L 0.24 TCGA-FW-A3R5-06 18 6943310 6943310 G A LAMA1 Missense_Mutation p.T2979I 0.23 deleterious(0.02) benign(0.236) TCGA-FW-A3R5-06 18 6947245 6947245 G A LAMA1 Nonsense_Mutation p.R2921* 0.29 TCGA-FW-A3R5-06 18 6965357 6965357 G A LAMA1 Silent p.T2375T 0.30 TCGA-FW-A3R5-06 18 6985585 6985585 C T LAMA1 Missense_Mutation p.G1813R 0.31 deleterious(0.01) benign(0.35) TCGA-FW-A3R5-06 18 6999962 6999962 C T LAMA1 Missense_Mutation p.D1473N 0.34 deleterious(0.03) benign(0.365) TCGA-FW-A3R5-06 18 7011416 7011416 C T LAMA1 Silent p.T1190T 0.29 TCGA-FW-A3R5-06 18 70209307 70209307 G A CBLN2 Missense_Mutation p.S30F 0.26 deleterious_low_confidence(0.03) benign(0.022) TCGA-FW-A3R5-06 18 7023190 7023190 C T LAMA1 Missense_Mutation p.D892N 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-FW-A3R5-06 18 7042193 7042193 G A LAMA1 Silent p.S404S 0.26 TCGA-FW-A3R5-06 18 70461399 70461399 C T NETO1 Missense_Mutation p.E198K 0.11 tolerated(0.18) probably_damaging(0.968) TCGA-FW-A3R5-06 18 70461449 70461449 C T NETO1 Missense_Mutation p.G181E 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 70502489 70502489 G A NETO1 Intron 0.21 TCGA-FW-A3R5-06 18 70502514 70502514 G A NETO1 Intron 0.20 TCGA-FW-A3R5-06 18 7050889 7050889 C T LAMA1 Missense_Mutation p.R131Q 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 70526179 70526179 G A NETO1 Silent p.F117F 0.27 TCGA-FW-A3R5-06 18 70526220 70526220 G A NETO1 Nonsense_Mutation p.R104* 0.29 TCGA-FW-A3R5-06 18 71740870 71740870 G C FBXO15 Silent p.P453P 0.23 TCGA-FW-A3R5-06 18 71796724 71796724 G A FBXO15 Missense_Mutation p.P234L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 71796789 71796789 C T FBXO15 Missense_Mutation p.M212I 0.23 tolerated(0.09) benign(0.025) TCGA-FW-A3R5-06 18 71797676 71797676 G A FBXO15 Missense_Mutation p.P184S 0.25 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 18 72238431 72238431 G A CNDP1 Missense_Mutation p.R256K 0.22 tolerated(0.23) benign(0.386) TCGA-FW-A3R5-06 18 7231201 7231201 G A LRRC30 Missense_Mutation p.G22E 0.11 tolerated(0.18) benign(0.054) TCGA-FW-A3R5-06 18 7231889 7231889 C T LRRC30 Silent p.L251L 0.29 TCGA-FW-A3R5-06 18 7231972 7231972 C T LRRC30 Missense_Mutation p.P279L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 72344257 72344257 C T ZNF407 Missense_Mutation p.R428C 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 72345521 72345521 C T ZNF407 Missense_Mutation p.S849L 0.21 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 18 72346770 72346770 C T ZNF407 Silent p.L1265L 0.28 TCGA-FW-A3R5-06 18 72346877 72346877 C T ZNF407 Missense_Mutation p.P1301L 0.14 deleterious(0) benign(0.231) TCGA-FW-A3R5-06 18 72347330 72347330 C T ZNF407 Missense_Mutation p.S1452L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 72775173 72775173 C T ZNF407 Silent p.S1832S 0.20 TCGA-FW-A3R5-06 18 72998408 72998408 C T TSHZ1 Missense_Mutation p.P304L 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 18 74082501 74082501 G A ZNF516 Silent p.S1138S 0.23 TCGA-FW-A3R5-06 18 74090859 74090859 C T ZNF516 Silent p.A1070A 0.21 TCGA-FW-A3R5-06 18 74092095 74092095 C T ZNF516 Missense_Mutation p.E659K 0.32 tolerated(0.09) benign(0.322) TCGA-FW-A3R5-06 18 74092231 74092231 G A ZNF516 Silent p.S613S 0.28 TCGA-FW-A3R5-06 18 74153399 74153399 G A ZNF516 Missense_Mutation p.R538C 0.40 deleterious(0) possibly_damaging(0.84) TCGA-FW-A3R5-06 18 74154189 74154189 G A ZNF516 Silent p.F274F 0.30 TCGA-FW-A3R5-06 18 74593462 74593462 C T ZNF236 Silent p.L469L 0.25 TCGA-FW-A3R5-06 18 74607058 74607058 A G ZNF236 Missense_Mutation p.I501V 0.26 tolerated(0.1) benign(0.05) TCGA-FW-A3R5-06 18 74640034 74640034 T A ZNF236 Silent p.S1520S 0.11 TCGA-FW-A3R5-06 18 74968155 74968155 G A GALR1 Silent p.K236K 0.24 TCGA-FW-A3R5-06 18 76752151 76752151 G A SALL3 Missense_Mutation p.E54K 0.22 tolerated(0.25) unknown(0) TCGA-FW-A3R5-06 18 76753258 76753258 C T SALL3 Missense_Mutation p.R423C 0.35 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 18 76753646 76753646 C T SALL3 Missense_Mutation p.S552F 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 18 76754413 76754413 G A SALL3 Missense_Mutation p.D808N 0.27 tolerated(0.07) benign(0.087) TCGA-FW-A3R5-06 18 76754602 76754602 G A SALL3 Missense_Mutation p.E871K 0.19 deleterious(0.01) possibly_damaging(0.573) TCGA-FW-A3R5-06 18 76755238 76755238 G A SALL3 Missense_Mutation p.G1083S 0.48 tolerated(0.35) benign(0.165) TCGA-FW-A3R5-06 18 76756929 76756929 G A SALL3 Silent p.A1170A 0.30 TCGA-FW-A3R5-06 18 76757136 76757136 C T SALL3 Silent p.P1239P 0.17 TCGA-FW-A3R5-06 18 76757169 76757169 C T SALL3 Silent p.L1250L 0.27 TCGA-FW-A3R5-06 18 76757332 76757332 C T SALL3 3'Flank 0.09 TCGA-FW-A3R5-06 18 77171000 77171000 C T NFATC1 Missense_Mutation p.P229L 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 18 77456024 77456024 C T CTDP1 Missense_Mutation p.T149I 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 18 77457903 77457903 G A CTDP1 Missense_Mutation p.R179Q 0.31 tolerated(0.05) possibly_damaging(0.88) TCGA-FW-A3R5-06 18 77475383 77475383 C T CTDP1 Silent p.F641F 0.24 TCGA-FW-A3R5-06 18 77679198 77679198 G A PQLC1 Silent p.S198S 0.21 TCGA-FW-A3R5-06 18 77733676 77733676 G A TXNL4A 3'UTR 0.09 TCGA-FW-A3R5-06 18 77797462 77797462 G A RBFA Missense_Mutation p.E112K 0.33 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 18 8069746 8069746 C T PTPRM Missense_Mutation p.R399C 0.27 deleterious(0.01) benign(0.005) TCGA-FW-A3R5-06 18 8720369 8720369 G A SOGA2 Missense_Mutation p.E78K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 18 8819105 8819105 C T SOGA2 Missense_Mutation p.P1002S 0.26 tolerated(0.28) benign(0.205) TCGA-FW-A3R5-06 18 909582 909582 G A ADCYAP1 Silent p.G159G 0.16 TCGA-FW-A3R5-06 18 9396289 9396289 C T TWSG1 Missense_Mutation p.P79S 0.23 deleterious(0.04) benign(0.276) TCGA-FW-A3R5-06 18 9886187 9886187 G A TXNDC2 Missense_Mutation p.E6K 0.17 deleterious(0.04) benign(0.203) TCGA-FW-A3R5-06 18 9887095 9887095 G A TXNDC2 Missense_Mutation p.G207S 0.24 tolerated(0.27) possibly_damaging(0.46) TCGA-FW-A3R5-06 18 9887096 9887096 G A TXNDC2 Missense_Mutation p.G207D 0.16 deleterious(0.01) benign(0.216) TCGA-FW-A3R5-06 18 9887508 9887508 C T TXNDC2 Silent p.I344I 0.33 TCGA-FW-A3R5-06 18 9887521 9887521 G A TXNDC2 Missense_Mutation p.E349K 0.33 tolerated(0.42) benign(0.349) TCGA-FW-A3R5-06 18 9887946 9887946 C T TXNDC2 Silent p.F490F 0.20 TCGA-FW-A3R5-06 19 1005273 1005273 C T GRIN3B Silent p.F591F 0.22 TCGA-FW-A3R5-06 19 10071067 10071067 C T COL5A3 3'UTR 0.23 TCGA-FW-A3R5-06 19 10071223 10071223 C T COL5A3 Missense_Mutation p.G1701E 0.26 unknown(0) TCGA-FW-A3R5-06 19 10073501 10073501 C T COL5A3 Silent p.G1615G 0.43 TCGA-FW-A3R5-06 19 10077009 10077009 G A COL5A3 Missense_Mutation p.P1588L 0.33 unknown(0) TCGA-FW-A3R5-06 19 10079083 10079083 G A COL5A3 Missense_Mutation p.P1431L 0.29 unknown(0) TCGA-FW-A3R5-06 19 10080036 10080036 G A COL5A3 Missense_Mutation p.P1381S 0.28 unknown(0) TCGA-FW-A3R5-06 19 10080327 10080327 C T COL5A3 Missense_Mutation p.R1341K 0.23 unknown(0) TCGA-FW-A3R5-06 19 10083645 10083645 G A COL5A3 Missense_Mutation p.P1242S 0.15 unknown(0) TCGA-FW-A3R5-06 19 10083692 10083692 C T COL5A3 Missense_Mutation p.G1226E 0.31 unknown(0) TCGA-FW-A3R5-06 19 10084865 10084865 G A COL5A3 Silent p.V1162V 0.34 TCGA-FW-A3R5-06 19 10088273 10088273 G A COL5A3 Silent p.S1041S 0.16 TCGA-FW-A3R5-06 19 10089637 10089637 C T COL5A3 Missense_Mutation p.G965E 0.27 unknown(0) TCGA-FW-A3R5-06 19 10089654 10089654 C T COL5A3 Silent p.G959G 0.16 TCGA-FW-A3R5-06 19 10092766 10092766 C T COL5A3 Missense_Mutation p.G812E 0.23 unknown(0) TCGA-FW-A3R5-06 19 10104320 10104320 C T COL5A3 Missense_Mutation p.G557E 0.22 unknown(0) TCGA-FW-A3R5-06 19 10104446 10104446 C T COL5A3 Missense_Mutation p.G542R 0.30 unknown(0) TCGA-FW-A3R5-06 19 10106264 10106264 T A COL5A3 Silent p.G521G 0.28 TCGA-FW-A3R5-06 19 10108085 10108085 G A COL5A3 Missense_Mutation p.P409S 0.56 unknown(0) TCGA-FW-A3R5-06 19 10114359 10114359 G A COL5A3 Missense_Mutation p.P244L 0.11 unknown(0) TCGA-FW-A3R5-06 19 10114360 10114360 G A COL5A3 Missense_Mutation p.P244S 0.11 unknown(0) TCGA-FW-A3R5-06 19 10132058 10132058 C T RDH8 Missense_Mutation p.P242S 0.23 tolerated(0.17) possibly_damaging(0.851) TCGA-FW-A3R5-06 19 10132509 10132509 C T RDH8 3'UTR 0.35 TCGA-FW-A3R5-06 19 10165979 10165979 G A C3P1 RNA 0.20 TCGA-FW-A3R5-06 19 10221747 10221747 C T PPAN Intron 0.34 TCGA-FW-A3R5-06 19 10247785 10247785 G A DNMT1 Missense_Mutation p.R1489C 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 10265056 10265056 G A DNMT1 Silent p.F644F 0.19 TCGA-FW-A3R5-06 19 10267156 10267156 G A DNMT1 Missense_Mutation p.P437L 0.33 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 19 10368915 10368915 C T MRPL4 Missense_Mutation p.P155S 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 10368916 10368916 C T MRPL4 Missense_Mutation p.P155L 0.11 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 1037846 1037846 C T CNN2 Missense_Mutation p.P293S 0.25 tolerated_low_confidence(0.74) unknown(0) TCGA-FW-A3R5-06 19 10395216 10395216 C T ICAM1 Nonsense_Mutation p.Q355* 0.13 TCGA-FW-A3R5-06 19 10395989 10395989 C T ICAM1 3'UTR 0.40 TCGA-FW-A3R5-06 19 10397994 10397994 C T ICAM4 Silent p.L102L 0.35 TCGA-FW-A3R5-06 19 10398444 10398444 C T ICAM4 Silent p.L184L 0.09 TCGA-FW-A3R5-06 19 10403533 10403533 C T ICAM5 Missense_Mutation p.R403C 0.18 deleterious(0.02) possibly_damaging(0.868) TCGA-FW-A3R5-06 19 10405169 10405169 C T ICAM5 Missense_Mutation p.R695C 0.22 tolerated(0.18) possibly_damaging(0.863) TCGA-FW-A3R5-06 19 10419190 10419190 G A ZGLP1 Silent p.A56A 0.33 TCGA-FW-A3R5-06 19 10428434 10428434 G A RAVER1 Missense_Mutation p.P686S 0.20 tolerated(0.08) possibly_damaging(0.844) TCGA-FW-A3R5-06 19 10428436 10428436 G A RAVER1 Missense_Mutation p.S685F 0.20 tolerated(0.1) probably_damaging(0.909) TCGA-FW-A3R5-06 19 10434093 10434093 G A RAVER1 Silent p.P319P 0.17 TCGA-FW-A3R5-06 19 10434094 10434094 G A RAVER1 Missense_Mutation p.P319L 0.17 deleterious(0.01) benign(0.01) TCGA-FW-A3R5-06 19 10449579 10449579 G A ICAM3 Missense_Mutation p.P41L 0.24 tolerated(0.36) benign(0.075) TCGA-FW-A3R5-06 19 10465203 10465203 G A TYK2 Silent p.I900I 0.30 TCGA-FW-A3R5-06 19 10465272 10465272 G A TYK2 Silent p.V877V 0.32 TCGA-FW-A3R5-06 19 10468410 10468410 G A TYK2 Intron 0.50 TCGA-FW-A3R5-06 19 10468411 10468411 G A TYK2 Intron 0.55 TCGA-FW-A3R5-06 19 1047173 1047173 C T ABCA7 Silent p.P621P 0.25 TCGA-FW-A3R5-06 19 10476376 10476376 G A TYK2 Silent p.P276P 0.23 TCGA-FW-A3R5-06 19 10489094 10489094 G A TYK2 5'UTR 0.16 TCGA-FW-A3R5-06 19 1050936 1050936 C T ABCA7 Missense_Mutation p.L857F 0.35 deleterious(0.01) possibly_damaging(0.651) TCGA-FW-A3R5-06 19 1051955 1051955 C T ABCA7 Missense_Mutation p.L993F 0.15 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 10563949 10563949 G A PDE4A Intron 0.27 TCGA-FW-A3R5-06 19 10578330 10578330 C T PDE4A 3'UTR 0.26 TCGA-FW-A3R5-06 19 1058699 1058699 C T ABCA7 Silent p.F1744F 0.26 TCGA-FW-A3R5-06 19 10625613 10625613 G A S1PR5 Silent p.L25L 0.22 TCGA-FW-A3R5-06 19 1065434 1065434 C T ABCA7 3'UTR 0.28 TCGA-FW-A3R5-06 19 1065435 1065435 C T ABCA7 3'UTR 0.28 TCGA-FW-A3R5-06 19 10685646 10685646 C T AP1M2 Silent p.E369E 0.18 TCGA-FW-A3R5-06 19 10742306 10742306 C T SLC44A2 Silent p.A169A 0.33 TCGA-FW-A3R5-06 19 10747052 10747052 C T SLC44A2 Silent p.F429F 0.32 TCGA-FW-A3R5-06 19 10753581 10753581 C T SLC44A2 Intron 0.18 TCGA-FW-A3R5-06 19 10753686 10753686 G A SLC44A2 Intron 0.33 TCGA-FW-A3R5-06 19 10754088 10754088 G A SLC44A2 3'UTR 0.28 TCGA-FW-A3R5-06 19 10792813 10792813 C T ILF3 Missense_Mutation p.S442L 0.09 deleterious(0) benign(0.255) TCGA-FW-A3R5-06 19 10798340 10798340 C T ILF3 Missense_Mutation p.P797L 0.22 tolerated_low_confidence(0.1) unknown(0) TCGA-FW-A3R5-06 19 1079932 1079932 G A HMHA1 Silent p.T522T 0.34 TCGA-FW-A3R5-06 19 1079966 1079966 G A HMHA1 Missense_Mutation p.A534T 0.31 tolerated(0.05) possibly_damaging(0.771) TCGA-FW-A3R5-06 19 10823277 10823277 C T QTRT1 Silent p.F278F 0.28 TCGA-FW-A3R5-06 19 10824010 10824010 C T QTRT1 3'UTR 0.24 TCGA-FW-A3R5-06 19 10870427 10870427 C T DNM2 Missense_Mutation p.R59C 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 10893725 10893725 C T DNM2 Missense_Mutation p.L260F 0.30 tolerated(0.06) possibly_damaging(0.465) TCGA-FW-A3R5-06 19 1090119 1090119 G A POLR2E Missense_Mutation p.T152I 0.22 deleterious(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 19 10934538 10934538 C T DNM2 Missense_Mutation p.S619L 0.28 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 19 11040106 11040106 C T C19orf52 Missense_Mutation p.R171C 0.42 deleterious(0.03) benign(0.126) TCGA-FW-A3R5-06 19 110706 110706 C T OR4F17 Missense_Mutation p.L10F 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 19 1119586 1119586 G A SBNO2 Silent p.S434S 0.30 TCGA-FW-A3R5-06 19 11215925 11215925 C T LDLR Missense_Mutation p.R115C 0.31 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 19 11216169 11216169 C T LDLR Missense_Mutation p.P196L 0.33 tolerated(0.05) benign(0.353) TCGA-FW-A3R5-06 19 11218112 11218112 G A LDLR Missense_Mutation p.E288K 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 19 11231096 11231096 C T LDLR Silent p.L680L 0.15 TCGA-FW-A3R5-06 19 11289038 11289038 G A KANK2 Silent p.F509F 0.41 TCGA-FW-A3R5-06 19 11319416 11319416 G A DOCK6 Silent p.F1678F 0.29 TCGA-FW-A3R5-06 19 11343898 11343898 G A DOCK6 Missense_Mutation p.S900F 0.29 deleterious(0.04) benign(0.001) TCGA-FW-A3R5-06 19 11344004 11344004 G A DOCK6 Missense_Mutation p.R865C 0.23 deleterious(0.01) possibly_damaging(0.556) TCGA-FW-A3R5-06 19 11411785 11411785 C T TSPAN16 Intron 0.35 TCGA-FW-A3R5-06 19 11448054 11448054 G A RAB3D Nonsense_Mutation p.Q8* 0.27 TCGA-FW-A3R5-06 19 11448127 11448127 G A RAB3D 5'UTR 0.28 TCGA-FW-A3R5-06 19 11456054 11456054 G A TMEM205 Silent p.F46F 0.13 TCGA-FW-A3R5-06 19 11531479 11531479 C T CCDC151 3'UTR 0.14 TCGA-FW-A3R5-06 19 11558330 11558330 C T PRKCSH Missense_Mutation p.S309L 0.29 tolerated(0.24) benign(0.001) TCGA-FW-A3R5-06 19 11567934 11567934 C T ELAVL3 Missense_Mutation p.G248D 0.15 tolerated(0.07) benign(0.191) TCGA-FW-A3R5-06 19 11568980 11568980 C T ELAVL3 Silent p.A203A 0.29 TCGA-FW-A3R5-06 19 11577595 11577595 G A ELAVL3 Silent p.G19G 0.24 TCGA-FW-A3R5-06 19 11616922 11616922 G C ECSIT 3'UTR 0.18 TCGA-FW-A3R5-06 19 11624842 11624842 C T ECSIT Silent p.A97A 0.22 TCGA-FW-A3R5-06 19 11658696 11658696 G A CNN1 Missense_Mutation p.E159K 0.42 tolerated(0.06) benign(0.206) TCGA-FW-A3R5-06 19 11660757 11660757 G C CNN1 3'UTR 0.38 TCGA-FW-A3R5-06 19 11833307 11833307 G A ZNF823 Nonsense_Mutation p.R348* 0.11 TCGA-FW-A3R5-06 19 11891923 11891923 C T ZNF441 Silent p.F428F 0.29 TCGA-FW-A3R5-06 19 11917576 11917576 C T ZNF491 Missense_Mutation p.P270S 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 19 12089447 12089447 C T ZNF763 Silent p.S239S 0.25 TCGA-FW-A3R5-06 19 12090136 12090136 C T ZNF763 3'UTR 0.30 TCGA-FW-A3R5-06 19 12090196 12090196 C T ZNF763 3'UTR 0.18 TCGA-FW-A3R5-06 19 12155097 12155097 C T ZNF878 Silent p.G373G 0.21 TCGA-FW-A3R5-06 19 12155160 12155160 C T ZNF878 Silent p.K352K 0.07 TCGA-FW-A3R5-06 19 12184843 12184843 C T ZNF844 Intron 0.34 TCGA-FW-A3R5-06 19 12184860 12184860 C T ZNF844 Silent p.F6F 0.35 TCGA-FW-A3R5-06 19 12184911 12184911 T A ZNF844 Silent p.P23P 0.28 TCGA-FW-A3R5-06 19 12186665 12186665 G A ZNF844 Missense_Mutation p.E244K 0.19 tolerated(0.19) possibly_damaging(0.874) TCGA-FW-A3R5-06 19 12187389 12187389 C T ZNF844 Missense_Mutation p.S485L 0.35 tolerated(0.63) benign(0.024) TCGA-FW-A3R5-06 19 12223856 12223856 G A ZNF788 Silent p.G498G 0.13 TCGA-FW-A3R5-06 19 12243696 12243696 G A ZNF20 Silent p.F435F 0.23 TCGA-FW-A3R5-06 19 12256752 12256752 C T ZNF625 Missense_Mutation p.G160E 0.11 tolerated(1) benign(0.125) TCGA-FW-A3R5-06 19 12256753 12256753 C T ZNF625 Missense_Mutation p.G160R 0.11 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 19 12297482 12297482 C T ZNF136 Missense_Mutation p.P97S 0.23 tolerated(0.32) possibly_damaging(0.637) TCGA-FW-A3R5-06 19 12384283 12384283 G A ZNF44 Missense_Mutation p.P311S 0.26 tolerated(1) probably_damaging(1) TCGA-FW-A3R5-06 19 12384536 12384536 G A ZNF44 Silent p.F226F 0.22 TCGA-FW-A3R5-06 19 12429377 12429377 G A ZNF563 3'UTR 0.29 TCGA-FW-A3R5-06 19 12429458 12429458 G A ZNF563 Missense_Mutation p.P461S 0.32 tolerated(0.91) benign(0.119) TCGA-FW-A3R5-06 19 12460892 12460892 G A ZNF442 Missense_Mutation p.L503F 0.19 tolerated(0.47) benign(0.095) TCGA-FW-A3R5-06 19 12576177 12576177 C T ZNF709 Missense_Mutation p.E187K 0.26 tolerated(0.39) benign(0.04) TCGA-FW-A3R5-06 19 12639443 12639443 G A ZNF564 Missense_Mutation p.S24F 0.28 tolerated(0.06) benign(0.345) TCGA-FW-A3R5-06 19 12691844 12691844 G A ZNF490 Missense_Mutation p.L349F 0.20 tolerated(0.57) benign(0.433) TCGA-FW-A3R5-06 19 12692196 12692196 G A ZNF490 Silent p.F231F 0.33 TCGA-FW-A3R5-06 19 12760765 12760765 G A MAN2B1 Silent p.F743F 0.29 TCGA-FW-A3R5-06 19 12760990 12760990 G A MAN2B1 Missense_Mutation p.S698F 0.09 deleterious(0.02) possibly_damaging(0.858) TCGA-FW-A3R5-06 19 12774193 12774193 G A MAN2B1 Missense_Mutation p.R283C 0.32 tolerated(0.05) possibly_damaging(0.762) TCGA-FW-A3R5-06 19 12799973 12799973 G A FBXW9 3'UTR 0.38 TCGA-FW-A3R5-06 19 12802014 12802014 G A FBXW9 Silent p.T283T 0.24 TCGA-FW-A3R5-06 19 12814536 12814536 G A TNPO2 Missense_Mutation p.P701L 0.21 deleterious(0.01) benign(0.1) TCGA-FW-A3R5-06 19 12826135 12826135 G A TNPO2 Silent p.S190S 0.31 TCGA-FW-A3R5-06 19 12874090 12874090 G A HOOK2 3'UTR 0.28 TCGA-FW-A3R5-06 19 12939478 12939478 G A RTBDN Nonsense_Mutation p.Q152* 0.19 TCGA-FW-A3R5-06 19 12939479 12939479 G A RTBDN Silent p.C151C 0.20 TCGA-FW-A3R5-06 19 12939536 12939536 G A RTBDN Silent p.R132R 0.15 TCGA-FW-A3R5-06 19 12945613 12945613 G A RTBDN Missense_Mutation p.L22F 0.20 tolerated_low_confidence(0.19) benign(0.331) TCGA-FW-A3R5-06 19 12969363 12969363 G A MAST1 Silent p.R392R 0.27 TCGA-FW-A3R5-06 19 12969475 12969475 G A MAST1 Missense_Mutation p.E430K 0.37 deleterious(0) possibly_damaging(0.854) TCGA-FW-A3R5-06 19 12976259 12976259 G A MAST1 Missense_Mutation p.D590N 0.12 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 19 12978676 12978676 C T MAST1 Silent p.A817A 0.24 TCGA-FW-A3R5-06 19 12979903 12979903 C T MAST1 Missense_Mutation p.L933F 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 19 13084208 13084208 C T DAND5 Silent p.F110F 0.19 TCGA-FW-A3R5-06 19 13084385 13084385 C T DAND5 Silent p.S169S 0.30 TCGA-FW-A3R5-06 19 13318123 13318123 G A CACNA1A 3'UTR 0.44 TCGA-FW-A3R5-06 19 13322932 13322932 G A CACNA1A Silent p.L2096L 0.18 TCGA-FW-A3R5-06 19 13323499 13323499 C T CACNA1A Missense_Mutation p.G1999E 0.40 benign(0.056) TCGA-FW-A3R5-06 19 13366056 13366056 G A CACNA1A Silent p.F1536F 0.20 TCGA-FW-A3R5-06 19 13386683 13386683 G A CACNA1A Silent p.L1324L 0.30 TCGA-FW-A3R5-06 19 13395998 13395998 G T CACNA1A Missense_Mutation p.D1192E 0.22 possibly_damaging(0.866) TCGA-FW-A3R5-06 19 13397555 13397555 G A CACNA1A Silent p.P1105P 0.19 TCGA-FW-A3R5-06 19 13397666 13397666 C T CACNA1A Missense_Mutation p.M1068I 0.26 benign(0.001) TCGA-FW-A3R5-06 19 13397765 13397765 G T CACNA1A Silent p.S1035S 0.51 TCGA-FW-A3R5-06 19 13414658 13414658 C T CACNA1A Missense_Mutation p.G676E 0.62 probably_damaging(0.998) TCGA-FW-A3R5-06 19 13414699 13414699 C T CACNA1A Splice_Site p.X663_splice 0.17 TCGA-FW-A3R5-06 19 13418631 13418631 C T CACNA1A Missense_Mutation p.D651N 0.21 probably_damaging(0.982) TCGA-FW-A3R5-06 19 13418643 13418643 G A CACNA1A Missense_Mutation p.P647S 0.25 probably_damaging(0.986) TCGA-FW-A3R5-06 19 13418659 13418659 G A CACNA1A Silent p.F641F 0.17 TCGA-FW-A3R5-06 19 13423582 13423582 G A CACNA1A Silent p.F523F 0.21 TCGA-FW-A3R5-06 19 13563773 13563773 G A CACNA1A Silent p.I152I 0.28 TCGA-FW-A3R5-06 19 13862502 13862502 C T CCDC130 5'UTR 0.42 TCGA-FW-A3R5-06 19 13873966 13873966 C T CCDC130 3'UTR 0.31 TCGA-FW-A3R5-06 19 13985595 13985595 G A NANOS3 5'Flank 0.26 TCGA-FW-A3R5-06 19 13988354 13988354 G A NANOS3 Missense_Mutation p.E98K 0.20 tolerated(0.29) benign(0.129) TCGA-FW-A3R5-06 19 14001207 14001207 G A C19orf57 Silent p.P154P 0.29 TCGA-FW-A3R5-06 19 14043423 14043423 C T PODNL1 3'UTR 0.44 TCGA-FW-A3R5-06 19 14094343 14094343 G A RFX1 Silent p.T128T 0.30 TCGA-FW-A3R5-06 19 14150715 14150715 G A IL27RA Nonsense_Mutation p.W176* 0.34 TCGA-FW-A3R5-06 19 14157366 14157366 G A IL27RA Silent p.G359G 0.24 TCGA-FW-A3R5-06 19 14157367 14157367 G A IL27RA Missense_Mutation p.D360N 0.24 tolerated(0.17) possibly_damaging(0.568) TCGA-FW-A3R5-06 19 14160012 14160012 C T IL27RA Missense_Mutation p.P430S 0.29 tolerated(0.64) benign(0.01) TCGA-FW-A3R5-06 19 14160099 14160099 G A IL27RA Missense_Mutation p.G459R 0.08 tolerated(0.51) benign(0.048) TCGA-FW-A3R5-06 19 14247214 14247214 G A ASF1B Missense_Mutation p.H19Y 0.21 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 14512561 14512561 C T CD97 Missense_Mutation p.A391V 0.13 tolerated(0.09) benign(0.022) TCGA-FW-A3R5-06 19 14568910 14568910 C T PKN1 Silent p.G417G 0.17 TCGA-FW-A3R5-06 19 1457134 1457134 G A APC2 Missense_Mutation p.E367K 0.44 probably_damaging(1) TCGA-FW-A3R5-06 19 14593559 14593559 G A GIPC1 Missense_Mutation p.T77I 0.24 deleterious(0) benign(0.025) TCGA-FW-A3R5-06 19 14682756 14682756 G A NDUFB7 Silent p.P19P 0.24 TCGA-FW-A3R5-06 19 14749141 14749141 G A EMR3 Silent p.S420S 0.17 TCGA-FW-A3R5-06 19 14749142 14749142 G A EMR3 Missense_Mutation p.S420F 0.17 deleterious(0) possibly_damaging(0.697) TCGA-FW-A3R5-06 19 14752260 14752260 G A EMR3 Missense_Mutation p.L407F 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 14765924 14765924 C T EMR3 Nonsense_Mutation p.W149* 0.12 TCGA-FW-A3R5-06 19 14854482 14854482 G A EMR2 Silent p.I766I 0.31 TCGA-FW-A3R5-06 19 14910058 14910058 C T OR7C1 Missense_Mutation p.M297I 0.31 tolerated_low_confidence(1) benign(0.002) TCGA-FW-A3R5-06 19 14910370 14910370 G A OR7C1 Silent p.F193F 0.09 TCGA-FW-A3R5-06 19 14939098 14939098 G A OR7A5 Intron 0.25 TCGA-FW-A3R5-06 19 14991526 14991526 G A OR7A17 Silent p.I214I 0.26 TCGA-FW-A3R5-06 19 15052304 15052304 G A OR7C2 Missense_Mutation p.E2K 0.25 tolerated_low_confidence(0.09) benign(0.078) TCGA-FW-A3R5-06 19 15052500 15052500 C G OR7C2 Missense_Mutation p.S67C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 15052501 15052501 C T OR7C2 Silent p.S67S 0.25 TCGA-FW-A3R5-06 19 15052768 15052768 C T OR7C2 Silent p.S156S 0.31 TCGA-FW-A3R5-06 19 15052800 15052800 C T OR7C2 Missense_Mutation p.S167F 0.34 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 19 15053097 15053097 C T OR7C2 Missense_Mutation p.P266L 0.29 deleterious_low_confidence(0) benign(0.027) TCGA-FW-A3R5-06 19 15053254 15053254 C T OR7C2 Silent p.L318L 0.34 TCGA-FW-A3R5-06 19 15061169 15061169 C T SLC1A6 Silent p.G511G 0.29 TCGA-FW-A3R5-06 19 15061170 15061170 C T SLC1A6 Missense_Mutation p.G511E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 15063777 15063777 C T SLC1A6 Missense_Mutation p.E488K 0.30 tolerated(0.06) probably_damaging(0.925) TCGA-FW-A3R5-06 19 15065098 15065098 G A SLC1A6 Silent p.L405L 0.34 TCGA-FW-A3R5-06 19 1506656 1506656 G A ADAMTSL5 Silent p.P349P 0.46 TCGA-FW-A3R5-06 19 15073099 15073099 C T SLC1A6 Missense_Mutation p.G217E 0.09 tolerated(0.5) possibly_damaging(0.573) TCGA-FW-A3R5-06 19 1510897 1510897 G A ADAMTSL5 Missense_Mutation p.L16F 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.86) TCGA-FW-A3R5-06 19 15131471 15131471 G A CCDC105 Missense_Mutation p.A292T 0.26 deleterious(0.01) benign(0.307) TCGA-FW-A3R5-06 19 15132462 15132462 G A CCDC105 Missense_Mutation p.G359E 0.09 deleterious(0.01) probably_damaging(0.941) TCGA-FW-A3R5-06 19 15132675 15132675 C T CCDC105 Missense_Mutation p.R399C 0.38 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 19 15166852 15166852 G A CASP14 Silent p.T227T 0.21 TCGA-FW-A3R5-06 19 15198013 15198013 T A OR1I1 Missense_Mutation p.I46N 0.34 deleterious(0) possibly_damaging(0.536) TCGA-FW-A3R5-06 19 15198326 15198326 G A OR1I1 Missense_Mutation p.M150I 0.25 tolerated(0.35) benign(0.003) TCGA-FW-A3R5-06 19 15198561 15198561 C T OR1I1 Missense_Mutation p.P229S 0.27 tolerated(0.27) possibly_damaging(0.842) TCGA-FW-A3R5-06 19 15198724 15198724 C T OR1I1 Missense_Mutation p.P283L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 15234287 15234287 G A ILVBL Missense_Mutation p.S79F 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 15271395 15271395 G A NOTCH3 3'UTR 0.27 TCGA-FW-A3R5-06 19 15276853 15276853 C T NOTCH3 Silent p.E1804E 0.28 TCGA-FW-A3R5-06 19 15296161 15296161 G A NOTCH3 Nonsense_Mutation p.R735* 0.25 TCGA-FW-A3R5-06 19 15299893 15299893 C T NOTCH3 Missense_Mutation p.E429K 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 15349239 15349239 G C BRD4 Missense_Mutation p.D1346E 0.21 benign(0.417) TCGA-FW-A3R5-06 19 15364970 15364970 G A BRD4 Silent p.S717S 0.17 TCGA-FW-A3R5-06 19 15364971 15364971 G A BRD4 Missense_Mutation p.S717F 0.17 possibly_damaging(0.485) TCGA-FW-A3R5-06 19 15375521 15375521 G A BRD4 Silent p.P302P 0.17 TCGA-FW-A3R5-06 19 15376433 15376433 G A BRD4 Missense_Mutation p.S194F 0.27 unknown(0) TCGA-FW-A3R5-06 19 15383628 15383628 G A BRD4 Missense_Mutation p.P95S 0.20 unknown(0) TCGA-FW-A3R5-06 19 15535087 15535087 G A WIZ Missense_Mutation p.P711L 0.21 deleterious(0.02) possibly_damaging(0.786) TCGA-FW-A3R5-06 19 15547702 15547702 G A WIZ Silent p.F148F 0.17 TCGA-FW-A3R5-06 19 15562664 15562664 C T RASAL3 Missense_Mutation p.G993E 0.34 tolerated_low_confidence(0.08) benign(0.038) TCGA-FW-A3R5-06 19 15565261 15565261 G A RASAL3 Missense_Mutation p.P691S 0.29 tolerated(0.78) benign(0.197) TCGA-FW-A3R5-06 19 15567435 15567435 G A RASAL3 Missense_Mutation p.T485I 0.28 tolerated(0.15) possibly_damaging(0.472) TCGA-FW-A3R5-06 19 15571068 15571068 C T RASAL3 Missense_Mutation p.G203E 0.27 deleterious(0) possibly_damaging(0.873) TCGA-FW-A3R5-06 19 15579516 15579516 C T PGLYRP2 Silent p.R563R 0.22 TCGA-FW-A3R5-06 19 15580433 15580433 G A PGLYRP2 Intron 0.82 TCGA-FW-A3R5-06 19 15580492 15580492 G A PGLYRP2 Missense_Mutation p.P531L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 15580660 15580660 G A PGLYRP2 Missense_Mutation p.S475F 0.27 deleterious(0.05) benign(0.049) TCGA-FW-A3R5-06 19 15582830 15582830 C T PGLYRP2 Missense_Mutation p.G405E 0.25 deleterious(0.03) possibly_damaging(0.752) TCGA-FW-A3R5-06 19 15586491 15586491 G A PGLYRP2 Silent p.S330S 0.27 TCGA-FW-A3R5-06 19 15587019 15587019 G A PGLYRP2 Silent p.T154T 0.15 TCGA-FW-A3R5-06 19 15636352 15636352 C T CYP4F22 Silent p.L69L 0.30 TCGA-FW-A3R5-06 19 15648209 15648209 C T CYP4F22 Silent p.F135F 0.35 TCGA-FW-A3R5-06 19 15651288 15651288 C T CYP4F22 Silent p.I233I 0.26 TCGA-FW-A3R5-06 19 15654992 15654992 G A CYP4F22 Nonsense_Mutation p.W346* 0.26 TCGA-FW-A3R5-06 19 15655019 15655019 G A CYP4F22 Silent p.P355P 0.35 TCGA-FW-A3R5-06 19 15734018 15734018 C T CYP4F8 RNA 0.36 TCGA-FW-A3R5-06 19 15739639 15739639 C T CYP4F8 RNA 0.26 TCGA-FW-A3R5-06 19 15756582 15756582 C T CYP4F3 Silent p.F84F 0.29 TCGA-FW-A3R5-06 19 15756611 15756611 C T CYP4F3 Missense_Mutation p.P94L 0.33 deleterious(0.02) possibly_damaging(0.798) TCGA-FW-A3R5-06 19 15756624 15756624 C T CYP4F3 Silent p.I98I 0.34 TCGA-FW-A3R5-06 19 15756644 15756644 C T CYP4F3 Missense_Mutation p.T105I 0.33 deleterious(0.01) benign(0.192) TCGA-FW-A3R5-06 19 15758113 15758113 T A CYP4F3 Missense_Mutation p.N168K 0.12 deleterious(0) benign(0.213) TCGA-FW-A3R5-06 19 15760766 15760766 C T CYP4F3 Missense_Mutation p.L231F 0.33 deleterious(0.03) possibly_damaging(0.529) TCGA-FW-A3R5-06 19 15760906 15760906 C T CYP4F3 Silent p.T277T 0.12 TCGA-FW-A3R5-06 19 15770280 15770280 C T CYP4F3 3'UTR 0.38 TCGA-FW-A3R5-06 19 1578223 1578223 G A MBD3 3'UTR 0.23 TCGA-FW-A3R5-06 19 15793285 15793285 G A CYP4F12 Silent p.Q204Q 0.21 TCGA-FW-A3R5-06 19 15795653 15795653 G A CYP4F12 Missense_Mutation p.E316K 0.18 tolerated(0.09) benign(0.06) TCGA-FW-A3R5-06 19 15806999 15806999 G A CYP4F12 Silent p.G426G 0.28 TCGA-FW-A3R5-06 19 15807281 15807281 G A CYP4F12 Silent p.G452G 0.24 TCGA-FW-A3R5-06 19 1581114 1581114 G A MBD3 Silent p.F218F 0.20 TCGA-FW-A3R5-06 19 15839623 15839623 C T OR10H2 Missense_Mutation p.S257F 0.21 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 19 15852698 15852698 C T OR10H3 Missense_Mutation p.H166Y 0.31 tolerated(0.32) benign(0.152) TCGA-FW-A3R5-06 19 15871699 15871699 G A LLNLR-249E10.1 RNA 0.10 TCGA-FW-A3R5-06 19 15904925 15904925 C T OR10H5 Missense_Mutation p.L23F 0.26 tolerated(0.09) benign(0.021) TCGA-FW-A3R5-06 19 15905626 15905626 C T OR10H5 Silent p.A256A 0.26 TCGA-FW-A3R5-06 19 15905628 15905628 C T OR10H5 Missense_Mutation p.S257F 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 15905667 15905667 A T OR10H5 Missense_Mutation p.E270V 0.35 tolerated(0.09) possibly_damaging(0.58) TCGA-FW-A3R5-06 19 15918200 15918200 G A OR10H1 Silent p.L216L 0.21 TCGA-FW-A3R5-06 19 15918696 15918696 C T OR10H1 Missense_Mutation p.S51N 0.35 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 19 15989593 15989593 C T CYP4F2 Silent p.E517E 0.28 TCGA-FW-A3R5-06 19 15990197 15990197 C T CYP4F2 Silent p.E452E 0.25 TCGA-FW-A3R5-06 19 15990683 15990683 G A CYP4F2 Silent p.F380F 0.31 TCGA-FW-A3R5-06 19 15996760 15996760 C T CYP4F2 Silent p.K363K 0.30 TCGA-FW-A3R5-06 19 16000301 16000301 C T CYP4F2 Missense_Mutation p.D284N 0.22 tolerated(0.08) benign(0.061) TCGA-FW-A3R5-06 19 16000416 16000416 G A CYP4F2 Silent p.F245F 0.31 TCGA-FW-A3R5-06 19 16008341 16008341 G A CYP4F2 Silent p.A27A 0.19 TCGA-FW-A3R5-06 19 16025627 16025627 G A CYP4F11 Silent p.I398I 0.14 TCGA-FW-A3R5-06 19 16032908 16032908 C T CYP4F11 Missense_Mutation p.E352K 0.37 tolerated(0.05) possibly_damaging(0.718) TCGA-FW-A3R5-06 19 16033188 16033188 G A CYP4F11 Missense_Mutation p.T324I 0.26 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 19 16034646 16034646 G A CYP4F11 Silent p.F298F 0.23 TCGA-FW-A3R5-06 19 16035627 16035627 G A CYP4F11 Silent p.L197L 0.35 TCGA-FW-A3R5-06 19 16059904 16059904 C T OR10H4 Silent p.F29F 0.28 TCGA-FW-A3R5-06 19 16060098 16060098 C T OR10H4 Missense_Mutation p.T94I 0.26 deleterious(0) benign(0.267) TCGA-FW-A3R5-06 19 16060099 16060099 C T OR10H4 Silent p.T94T 0.26 TCGA-FW-A3R5-06 19 16060702 16060702 G A OR10H4 Silent p.R295R 0.39 TCGA-FW-A3R5-06 19 1611600 1611600 G A TCF3 3'UTR 0.33 TCGA-FW-A3R5-06 19 16131426 16131426 C T LINC00661 RNA 0.31 TCGA-FW-A3R5-06 19 16131429 16131429 G A LINC00661 RNA 0.30 TCGA-FW-A3R5-06 19 1615524 1615524 G A TCF3 Intron 0.31 TCGA-FW-A3R5-06 19 16178415 16178415 C T TPM4 5'UTR 0.27 TCGA-FW-A3R5-06 19 16275561 16275561 C T CIB3 Silent p.Q170Q 0.15 TCGA-FW-A3R5-06 19 16280507 16280507 G A CIB3 Silent p.L44L 0.13 TCGA-FW-A3R5-06 19 16589906 16589906 G A CALR3 3'UTR 0.21 TCGA-FW-A3R5-06 19 16686990 16686990 C T MED26 Missense_Mutation p.D551N 0.28 deleterious(0) possibly_damaging(0.586) TCGA-FW-A3R5-06 19 16859997 16859997 G A NWD1 Missense_Mutation p.E182K 0.28 tolerated(0.19) benign(0.006) TCGA-FW-A3R5-06 19 16860201 16860201 T C NWD1 Silent p.L250L 0.31 TCGA-FW-A3R5-06 19 16860953 16860953 C T NWD1 Silent p.G500G 0.10 TCGA-FW-A3R5-06 19 16870169 16870169 C T NWD1 Missense_Mutation p.R635C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 16875962 16875962 C T NWD1 Missense_Mutation p.A790V 0.33 deleterious(0.04) possibly_damaging(0.794) TCGA-FW-A3R5-06 19 16908679 16908679 C T NWD1 Silent p.S1147S 0.23 TCGA-FW-A3R5-06 19 16908680 16908680 C T NWD1 Missense_Mutation p.L1148F 0.23 tolerated(0.07) benign(0.188) TCGA-FW-A3R5-06 19 16910720 16910720 G A NWD1 Silent p.G1161G 0.30 TCGA-FW-A3R5-06 19 16910722 16910722 C T NWD1 Missense_Mutation p.T1162I 0.12 tolerated(0.22) benign(0.187) TCGA-FW-A3R5-06 19 16910772 16910772 C T NWD1 Missense_Mutation p.R1179C 0.22 tolerated(0.2) benign(0.003) TCGA-FW-A3R5-06 19 16918926 16918926 G A NWD1 Nonsense_Mutation p.W1422* 0.29 TCGA-FW-A3R5-06 19 16925901 16925901 G A NWD1 3'UTR 0.25 TCGA-FW-A3R5-06 19 16925942 16925942 G A NWD1 3'UTR 0.32 TCGA-FW-A3R5-06 19 16962338 16962338 C T SIN3B Missense_Mutation p.P281L 0.16 tolerated(0.1) benign(0.008) TCGA-FW-A3R5-06 19 16962339 16962339 C T SIN3B Silent p.P281P 0.15 TCGA-FW-A3R5-06 19 16977298 16977298 C T SIN3B Silent p.F611F 0.22 TCGA-FW-A3R5-06 19 16980627 16980627 C T SIN3B Silent p.A753A 0.30 TCGA-FW-A3R5-06 19 17001309 17001309 C T F2RL3 Silent p.A345A 0.15 TCGA-FW-A3R5-06 19 17007100 17007100 C T CPAMD8 Silent p.G1818G 0.36 TCGA-FW-A3R5-06 19 17010355 17010355 G A CPAMD8 Silent p.L1640L 0.25 TCGA-FW-A3R5-06 19 17012086 17012086 G A CPAMD8 Silent p.S1616S 0.15 TCGA-FW-A3R5-06 19 17013509 17013509 C T CPAMD8 Silent p.A1592A 0.21 TCGA-FW-A3R5-06 19 17015315 17015315 C T CPAMD8 Missense_Mutation p.G1406S 0.29 tolerated(0.61) benign(0.002) TCGA-FW-A3R5-06 19 17017874 17017874 G A CPAMD8 Silent p.P1352P 0.29 TCGA-FW-A3R5-06 19 17038904 17038904 C T CPAMD8 Silent p.V1142V 0.26 TCGA-FW-A3R5-06 19 17088210 17088210 G A CPAMD8 Nonsense_Mutation p.Q623* 0.26 TCGA-FW-A3R5-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.17 tolerated(0.09) benign(0.03) TCGA-FW-A3R5-06 19 17104307 17104307 G A CPAMD8 Silent p.T442T 0.19 TCGA-FW-A3R5-06 19 17104380 17104380 G A CPAMD8 Missense_Mutation p.P418L 0.22 tolerated(0.14) benign(0.159) TCGA-FW-A3R5-06 19 17107960 17107960 C T CPAMD8 Silent p.T399T 0.35 TCGA-FW-A3R5-06 19 17122442 17122442 G A CPAMD8 Silent p.F178F 0.27 TCGA-FW-A3R5-06 19 17311449 17311449 C T MYO9B Silent p.A1458A 0.35 TCGA-FW-A3R5-06 19 17317979 17317979 C T MYO9B Silent p.F1850F 0.56 TCGA-FW-A3R5-06 19 17322773 17322773 C T MYO9B 3'UTR 0.47 TCGA-FW-A3R5-06 19 17330633 17330633 C T USE1 3'UTR 0.09 TCGA-FW-A3R5-06 19 17361191 17361191 C T USHBP1 Missense_Mutation p.R652Q 0.30 tolerated(0.06) benign(0.022) TCGA-FW-A3R5-06 19 17373487 17373487 C T USHBP1 Silent p.E172E 0.09 TCGA-FW-A3R5-06 19 17375071 17375071 C T USHBP1 Missense_Mutation p.G13E 0.34 deleterious(0) unknown(0) TCGA-FW-A3R5-06 19 17382414 17382414 C T BABAM1 Silent p.C98C 0.29 TCGA-FW-A3R5-06 19 17394451 17394451 C T ANKLE1 Missense_Mutation p.S293F 0.21 deleterious(0.02) possibly_damaging(0.851) TCGA-FW-A3R5-06 19 17435792 17435792 G A ANO8 Missense_Mutation p.P1022L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 19 17442179 17442179 G A ANO8 Missense_Mutation p.P210S 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-FW-A3R5-06 19 17448979 17448979 C T GTPBP3 Silent p.P72P 0.18 TCGA-FW-A3R5-06 19 17449365 17449365 C T GTPBP3 Nonsense_Mutation p.R136* 0.19 TCGA-FW-A3R5-06 19 17450006 17450006 C T GTPBP3 Missense_Mutation p.R279C 0.36 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 17452296 17452296 C T GTPBP3 Silent p.D453D 0.24 TCGA-FW-A3R5-06 19 17476457 17476457 C T PLVAP Missense_Mutation p.D273N 0.17 tolerated(0.07) benign(0.284) TCGA-FW-A3R5-06 19 17476486 17476486 G A PLVAP Missense_Mutation p.S263L 0.11 tolerated(0.11) benign(0.011) TCGA-FW-A3R5-06 19 17487897 17487897 G A PLVAP Silent p.A67A 0.21 TCGA-FW-A3R5-06 19 17488005 17488005 G A PLVAP Silent p.F31F 0.29 TCGA-FW-A3R5-06 19 17488061 17488061 G A PLVAP Missense_Mutation p.R13W 0.09 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 17652952 17652952 C T FAM129C Missense_Mutation p.S424L 0.36 deleterious(0.02) benign(0.311) TCGA-FW-A3R5-06 19 17660315 17660315 C T FAM129C Missense_Mutation p.P608S 0.22 deleterious(0.01) possibly_damaging(0.745) TCGA-FW-A3R5-06 19 17743712 17743712 C T UNC13A Missense_Mutation p.D1103N 0.31 deleterious(0.02) benign(0.167) TCGA-FW-A3R5-06 19 17746948 17746948 G A UNC13A Missense_Mutation p.L1034F 0.33 deleterious_low_confidence(0) possibly_damaging(0.659) TCGA-FW-A3R5-06 19 17768936 17768936 G A UNC13A Silent p.G234G 0.24 TCGA-FW-A3R5-06 19 17774359 17774359 C T UNC13A Missense_Mutation p.G181S 0.14 deleterious_low_confidence(0.03) benign(0.009) TCGA-FW-A3R5-06 19 17838113 17838113 C T MAP1S Silent p.S640S 0.33 TCGA-FW-A3R5-06 19 1784872 1784872 G A ATP8B3 Silent p.F1202F 0.31 TCGA-FW-A3R5-06 19 1785174 1785174 C T ATP8B3 Silent p.T1172T 0.33 TCGA-FW-A3R5-06 19 17892613 17892613 C T FCHO1 Missense_Mutation p.R641C 0.36 deleterious(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 19 17895037 17895037 G A FCHO1 Missense_Mutation p.R740Q 0.27 deleterious(0.02) probably_damaging(0.937) TCGA-FW-A3R5-06 19 17922823 17922823 C T B3GNT3 Silent p.Y337Y 0.28 TCGA-FW-A3R5-06 19 17941319 17941319 G A JAK3 Missense_Mutation p.P1030L 0.28 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 19 17943349 17943349 G A JAK3 Missense_Mutation p.R887C 0.16 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 19 17986820 17986820 C T SLC5A5 Silent p.G201G 0.17 TCGA-FW-A3R5-06 19 18004539 18004539 C T SLC5A5 Silent p.P595P 0.24 TCGA-FW-A3R5-06 19 18092675 18092675 C T KCNN1 Missense_Mutation p.P219L 0.26 tolerated(0.08) benign(0.003) TCGA-FW-A3R5-06 19 18092715 18092715 C A KCNN1 Silent p.I232I 0.21 TCGA-FW-A3R5-06 19 1811607 1811607 G A ATP8B3 Silent p.I43I 0.24 TCGA-FW-A3R5-06 19 1811795 1811795 G A ATP8B3 5'UTR 0.67 TCGA-FW-A3R5-06 19 18121442 18121442 C T ARRDC2 Silent p.P358P 0.31 TCGA-FW-A3R5-06 19 18170851 18170851 G A IL12RB1 Silent p.S612S 0.14 TCGA-FW-A3R5-06 19 18182980 18182980 C T IL12RB1 Silent p.S321S 0.33 TCGA-FW-A3R5-06 19 18186640 18186640 C T IL12RB1 Missense_Mutation p.E207K 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 19 18188342 18188342 C T IL12RB1 Missense_Mutation p.S178N 0.31 tolerated(0.44) benign(0.001) TCGA-FW-A3R5-06 19 18304780 18304780 C T MPV17L2 Silent p.V98V 0.40 TCGA-FW-A3R5-06 19 18322637 18322637 C T PDE4C Missense_Mutation p.E575K 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 18330167 18330167 C T PDE4C Silent p.E281E 0.16 TCGA-FW-A3R5-06 19 18331127 18331127 G A PDE4C Silent p.F237F 0.27 TCGA-FW-A3R5-06 19 18331249 18331249 C T PDE4C Silent p.Q224Q 0.27 TCGA-FW-A3R5-06 19 18332038 18332038 G A PDE4C Intron 0.29 TCGA-FW-A3R5-06 19 18332967 18332967 G A PDE4C Missense_Mutation p.R137W 0.41 deleterious(0.01) benign(0.027) TCGA-FW-A3R5-06 19 18368336 18368336 G A KIAA1683 Missense_Mutation p.P1253L 0.24 deleterious(0) benign(0.146) TCGA-FW-A3R5-06 19 18378199 18378199 G A KIAA1683 Missense_Mutation p.P51S 0.30 tolerated(0.49) benign(0.002) TCGA-FW-A3R5-06 19 18507007 18507007 C T LRRC25 Nonsense_Mutation p.W256* 0.20 TCGA-FW-A3R5-06 19 18547253 18547253 A T ISYNA1 Missense_Mutation p.S216T 0.30 tolerated(0.29) benign(0.003) TCGA-FW-A3R5-06 19 18572511 18572511 G A ELL Silent p.F207F 0.21 TCGA-FW-A3R5-06 19 18707512 18707512 G A CRLF1 Missense_Mutation p.P315L 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 19 18707817 18707817 C T CRLF1 Missense_Mutation p.G247E 0.09 tolerated(0.28) probably_damaging(0.999) TCGA-FW-A3R5-06 19 18731332 18731332 C T TMEM59L Silent p.L339L 0.26 TCGA-FW-A3R5-06 19 18775224 18775224 C T KLHL26 Silent p.V79V 0.17 TCGA-FW-A3R5-06 19 18780151 18780151 C T KLHL26 3'UTR 0.16 TCGA-FW-A3R5-06 19 18856637 18856637 C T CRTC1 Missense_Mutation p.P99L 0.19 deleterious(0) possibly_damaging(0.784) TCGA-FW-A3R5-06 19 18893760 18893760 C T COMP Missense_Mutation p.E747K 0.18 tolerated(0.06) probably_damaging(0.959) TCGA-FW-A3R5-06 19 18896805 18896805 C T COMP Missense_Mutation p.V487M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 19 18896895 18896895 C T COMP Missense_Mutation p.E457K 0.33 tolerated(0.17) benign(0.098) TCGA-FW-A3R5-06 19 18897384 18897384 C T COMP Silent p.G404G 0.19 TCGA-FW-A3R5-06 19 19004363 19004363 G A CERS1 Missense_Mutation p.L91F 0.32 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 19 19105985 19105985 G A SUGP2 Silent p.S1032S 0.27 TCGA-FW-A3R5-06 19 19120895 19120895 G A SUGP2 Missense_Mutation p.L703F 0.24 tolerated(0.05) possibly_damaging(0.534) TCGA-FW-A3R5-06 19 1912832 1912832 C T ADAT3 Silent p.F262F 0.24 TCGA-FW-A3R5-06 19 19136660 19136660 G A SUGP2 Missense_Mutation p.P166L 0.35 tolerated(0.09) possibly_damaging(0.535) TCGA-FW-A3R5-06 19 19136816 19136816 G A SUGP2 Missense_Mutation p.S114F 0.37 deleterious(0) benign(0.429) TCGA-FW-A3R5-06 19 19144974 19144974 C T ARMC6 5'UTR 0.28 TCGA-FW-A3R5-06 19 19168688 19168688 C T ARMC6 3'UTR 0.44 TCGA-FW-A3R5-06 19 19206957 19206957 C T SLC25A42 Silent p.G8G 0.25 TCGA-FW-A3R5-06 19 19217149 19217149 C T SLC25A42 Missense_Mutation p.P151L 0.24 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 19 19231957 19231957 G A TMEM161A Silent p.F311F 0.23 TCGA-FW-A3R5-06 19 19257422 19257422 G A MEF2B Silent p.S237S 0.28 TCGA-FW-A3R5-06 19 19335212 19335212 G A NCAN Missense_Mutation p.D250N 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 19337321 19337321 G A NCAN Missense_Mutation p.D367N 0.12 tolerated(0.1) benign(0.019) TCGA-FW-A3R5-06 19 19337746 19337746 C T NCAN Silent p.A508A 0.39 TCGA-FW-A3R5-06 19 19339087 19339087 C T NCAN Silent p.A886A 0.25 TCGA-FW-A3R5-06 19 19339336 19339336 C T NCAN Silent p.F969F 0.28 TCGA-FW-A3R5-06 19 19339423 19339423 C T NCAN Silent p.T998T 0.22 TCGA-FW-A3R5-06 19 19349165 19349165 C T NCAN Silent p.R1118R 0.21 TCGA-FW-A3R5-06 19 19349166 19349166 C T NCAN Missense_Mutation p.R1119C 0.21 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 19 19369408 19369408 C T HAPLN4 Silent p.G247G 0.09 TCGA-FW-A3R5-06 19 19372292 19372292 C T HAPLN4 Silent p.G28G 0.13 TCGA-FW-A3R5-06 19 19375463 19375463 C T TM6SF2 3'UTR 0.31 TCGA-FW-A3R5-06 19 19375544 19375544 G A TM6SF2 Missense_Mutation p.L355F 0.41 tolerated(0.28) probably_damaging(0.941) TCGA-FW-A3R5-06 19 19381100 19381100 G A TM6SF2 Intron 0.21 TCGA-FW-A3R5-06 19 19387352 19387352 G A SUGP1 3'UTR 0.33 TCGA-FW-A3R5-06 19 19387418 19387418 G A SUGP1 3'UTR 0.25 TCGA-FW-A3R5-06 19 19638102 19638102 C T NDUFA13 Silent p.I62I 0.31 TCGA-FW-A3R5-06 19 19638946 19638946 C T NDUFA13 3'UTR 0.29 TCGA-FW-A3R5-06 19 19655181 19655181 C T CILP2 Silent p.F609F 0.31 TCGA-FW-A3R5-06 19 19655781 19655781 C T CILP2 Silent p.V809V 0.33 TCGA-FW-A3R5-06 19 19655992 19655992 C T CILP2 Missense_Mutation p.P880S 0.34 tolerated(0.08) possibly_damaging(0.87) TCGA-FW-A3R5-06 19 19656465 19656465 G A CILP2 Silent p.P1037P 0.20 TCGA-FW-A3R5-06 19 19656605 19656605 C T CILP2 Missense_Mutation p.S1084F 0.38 deleterious(0) possibly_damaging(0.836) TCGA-FW-A3R5-06 19 19656741 19656741 C T CILP2 Silent p.I1129I 0.17 TCGA-FW-A3R5-06 19 19656865 19656865 C T CILP2 3'UTR 0.36 TCGA-FW-A3R5-06 19 19681534 19681534 C T PBX4 Missense_Mutation p.R101K 0.28 tolerated(0.23) benign(0.216) TCGA-FW-A3R5-06 19 19681593 19681593 G A PBX4 Silent p.L81L 0.30 TCGA-FW-A3R5-06 19 19740991 19740991 G A GMIP Silent p.T898T 0.21 TCGA-FW-A3R5-06 19 19745391 19745391 G A GMIP Missense_Mutation p.S670L 0.36 tolerated(0.15) benign(0.052) TCGA-FW-A3R5-06 19 19746291 19746291 C T GMIP Missense_Mutation p.R498Q 0.24 deleterious(0.01) possibly_damaging(0.862) TCGA-FW-A3R5-06 19 19746500 19746500 G A GMIP Missense_Mutation p.S453L 0.17 tolerated(0.09) benign(0.063) TCGA-FW-A3R5-06 19 19752827 19752827 G A GMIP Silent p.L46L 0.27 TCGA-FW-A3R5-06 19 19758335 19758335 G A ATP13A1 Silent p.D932D 0.34 TCGA-FW-A3R5-06 19 19758545 19758545 G A ATP13A1 Missense_Mutation p.P886S 0.36 deleterious(0.05) possibly_damaging(0.596) TCGA-FW-A3R5-06 19 19760570 19760570 G A ATP13A1 Missense_Mutation p.R839C 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 19760574 19760574 G A ATP13A1 Silent p.F837F 0.16 TCGA-FW-A3R5-06 19 19760614 19760621 GGGTCGGT AGGTCAGG ATP13A1 Missense_Mutation p.TDP822PDL 0.19 TCGA-FW-A3R5-06 19 19765374 19765374 G A ATP13A1 Silent p.A597A 0.29 TCGA-FW-A3R5-06 19 19766148 19766148 G A ATP13A1 Missense_Mutation p.S504F 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 19766365 19766365 G A ATP13A1 Silent p.I456I 0.36 TCGA-FW-A3R5-06 19 19822199 19822199 G A ZNF14 Nonsense_Mutation p.R631* 0.11 TCGA-FW-A3R5-06 19 19822367 19822367 G A ZNF14 Nonsense_Mutation p.R575* 0.27 TCGA-FW-A3R5-06 19 19822386 19822386 G A ZNF14 Silent p.F568F 0.29 TCGA-FW-A3R5-06 19 20003140 20003140 C T ZNF253 Missense_Mutation p.H362Y 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 19 20045034 20045034 C T ZNF93 Missense_Mutation p.P424S 0.19 deleterious(0.02) possibly_damaging(0.695) TCGA-FW-A3R5-06 19 20045433 20045433 A G ZNF93 Missense_Mutation p.I557V 0.35 tolerated(0.41) benign(0.065) TCGA-FW-A3R5-06 19 20117245 20117245 G A ZNF682 Missense_Mutation p.L356F 0.28 tolerated(0.05) probably_damaging(1) TCGA-FW-A3R5-06 19 20117876 20117876 G A ZNF682 Silent p.F145F 0.30 TCGA-FW-A3R5-06 19 20117929 20117929 C T ZNF682 Missense_Mutation p.E128K 0.31 tolerated(0.58) benign(0) TCGA-FW-A3R5-06 19 20216065 20216065 C T ZNF90 Silent p.L56L 0.28 TCGA-FW-A3R5-06 19 20216109 20216109 G A ZNF90 Missense_Mutation p.M70I 0.24 tolerated(0.09) benign(0.008) TCGA-FW-A3R5-06 19 20235891 20235891 C T CTC-260E6.2 RNA 0.28 TCGA-FW-A3R5-06 19 20278139 20278139 G A ZNF486 5'UTR 0.14 TCGA-FW-A3R5-06 19 2040160 2040160 G A MKNK2 Missense_Mutation p.T376I 0.25 tolerated(0.19) benign(0.086) TCGA-FW-A3R5-06 19 2041159 2041159 G A MKNK2 Silent p.P330P 0.31 TCGA-FW-A3R5-06 19 2041160 2041160 G A MKNK2 Missense_Mutation p.P330L 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 19 20728090 20728090 G A ZNF737 Missense_Mutation p.H307Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 19 20736568 20736568 C T ZNF737 Missense_Mutation p.R26Q 0.09 tolerated(1) benign(0.022) TCGA-FW-A3R5-06 19 20806987 20806987 C T ZNF626 3'UTR 0.32 TCGA-FW-A3R5-06 19 20807501 20807501 C T ZNF626 Silent p.E394E 0.23 TCGA-FW-A3R5-06 19 20807786 20807786 G T ZNF626 Silent p.T299T 0.09 TCGA-FW-A3R5-06 19 21239752 21239752 C T ZNF430 Missense_Mutation p.S213L 0.25 tolerated(0.07) benign(0.029) TCGA-FW-A3R5-06 19 21324973 21324973 C T ZNF431 5'UTR 0.27 TCGA-FW-A3R5-06 19 21366005 21366005 C T ZNF431 Missense_Mutation p.S300F 0.20 tolerated(0.24) benign(0.005) TCGA-FW-A3R5-06 19 21588586 21588586 C T ZNF493 Silent p.L61L 0.31 TCGA-FW-A3R5-06 19 21607050 21607050 C T ZNF493 Missense_Mutation p.S530L 0.18 deleterious(0.03) possibly_damaging(0.81) TCGA-FW-A3R5-06 19 21720271 21720271 G A ZNF429 Silent p.R472R 0.20 TCGA-FW-A3R5-06 19 21909553 21909553 C T ZNF100 Missense_Mutation p.D521N 0.14 deleterious(0.01) benign(0.212) TCGA-FW-A3R5-06 19 21910476 21910476 G A ZNF100 Missense_Mutation p.S213L 0.28 tolerated(0.06) possibly_damaging(0.533) TCGA-FW-A3R5-06 19 21933953 21933953 G A ZNF100 Intron 0.22 TCGA-FW-A3R5-06 19 21934130 21934130 G A ZNF100 Intron 0.24 TCGA-FW-A3R5-06 19 21991161 21991161 G A ZNF43 Missense_Mutation p.H560Y 0.34 deleterious(0.02) benign(0.365) TCGA-FW-A3R5-06 19 21991299 21991299 C T ZNF43 Missense_Mutation p.E514K 0.17 deleterious(0.02) possibly_damaging(0.733) TCGA-FW-A3R5-06 19 21992598 21992598 G A ZNF43 Missense_Mutation p.H81Y 0.12 tolerated(0.41) benign(0.009) TCGA-FW-A3R5-06 19 2211187 2211187 C T DOT1L Missense_Mutation p.P481S 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 19 2211188 2211188 C T DOT1L Missense_Mutation p.P481L 0.29 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 22155483 22155483 C T ZNF208 Missense_Mutation p.A785T 0.26 tolerated(0.06) probably_damaging(0.911) TCGA-FW-A3R5-06 19 22155533 22155533 T C ZNF208 Missense_Mutation p.K768R 0.20 tolerated(0.17) possibly_damaging(0.807) TCGA-FW-A3R5-06 19 22155537 22155537 G A ZNF208 Missense_Mutation p.H767Y 0.38 deleterious(0.03) possibly_damaging(0.742) TCGA-FW-A3R5-06 19 22156526 22156526 G A ZNF208 Missense_Mutation p.S437F 0.28 tolerated(0.68) probably_damaging(0.99) TCGA-FW-A3R5-06 19 22156658 22156658 C T ZNF208 Missense_Mutation p.G393E 0.08 deleterious(0.04) probably_damaging(0.958) TCGA-FW-A3R5-06 19 22156749 22156749 G A ZNF208 Missense_Mutation p.H363Y 0.29 deleterious(0) possibly_damaging(0.675) TCGA-FW-A3R5-06 19 22156957 22156957 G A ZNF208 Silent p.A293A 0.28 TCGA-FW-A3R5-06 19 22157085 22157085 G A ZNF208 Missense_Mutation p.H251Y 0.34 deleterious(0) benign(0.253) TCGA-FW-A3R5-06 19 22157244 22157244 C T ZNF208 Missense_Mutation p.E198K 0.32 tolerated(0.12) benign(0.098) TCGA-FW-A3R5-06 19 22157562 22157562 C T ZNF208 Missense_Mutation p.E92K 0.31 tolerated(0.7) benign(0.034) TCGA-FW-A3R5-06 19 2217047 2217047 C T DOT1L Silent p.S834S 0.29 TCGA-FW-A3R5-06 19 22171710 22171710 C T ZNF208 Missense_Mutation p.G2E 0.25 tolerated(0.25) benign(0.136) TCGA-FW-A3R5-06 19 2217878 2217878 C T DOT1L Silent p.P884P 0.16 TCGA-FW-A3R5-06 19 22255652 22255652 G A ZNF257 Silent p.L15L 0.24 TCGA-FW-A3R5-06 19 22271387 22271387 C T ZNF257 Missense_Mutation p.H279Y 0.25 deleterious(0.03) possibly_damaging(0.834) TCGA-FW-A3R5-06 19 22271762 22271762 G A ZNF257 Missense_Mutation p.E404K 0.39 deleterious(0.02) possibly_damaging(0.58) TCGA-FW-A3R5-06 19 22272156 22272156 G A ZNF257 Missense_Mutation p.R535K 0.38 tolerated(0.74) benign(0) TCGA-FW-A3R5-06 19 22362613 22362613 C T ZNF676 3'UTR 0.24 TCGA-FW-A3R5-06 19 22362829 22362829 C T ZNF676 Missense_Mutation p.E564K 0.26 tolerated(0.19) benign(0.005) TCGA-FW-A3R5-06 19 22363270 22363270 C T ZNF676 Missense_Mutation p.G417R 0.24 tolerated(0.07) probably_damaging(0.989) TCGA-FW-A3R5-06 19 22363473 22363473 G A ZNF676 Missense_Mutation p.S349F 0.20 tolerated(0.28) benign(0.001) TCGA-FW-A3R5-06 19 22363912 22363912 C T ZNF676 Missense_Mutation p.G203S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 19 22363937 22363937 C T ZNF676 Silent p.E194E 0.08 TCGA-FW-A3R5-06 19 22364016 22364016 G A ZNF676 Missense_Mutation p.S168F 0.30 tolerated(0.36) possibly_damaging(0.598) TCGA-FW-A3R5-06 19 22364037 22364037 C T ZNF676 Missense_Mutation p.R161K 0.27 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 19 22364370 22364370 G A ZNF676 Missense_Mutation p.S50F 0.34 deleterious(0) benign(0.058) TCGA-FW-A3R5-06 19 22379532 22379532 G A ZNF676 5'UTR 0.37 TCGA-FW-A3R5-06 19 22379604 22379604 G A ZNF676 5'UTR 0.24 TCGA-FW-A3R5-06 19 2252699 2252699 C T JSRP1 Missense_Mutation p.E209K 0.19 tolerated(0.1) possibly_damaging(0.801) TCGA-FW-A3R5-06 19 22574492 22574492 C T ZNF98 Silent p.E515E 0.22 TCGA-FW-A3R5-06 19 22575061 22575061 C T ZNF98 Missense_Mutation p.E326K 0.17 deleterious(0.03) benign(0.018) TCGA-FW-A3R5-06 19 22605036 22605036 G A ZNF98 5'UTR 0.25 TCGA-FW-A3R5-06 19 22783059 22783059 G A AC011467.1 5'Flank 0.27 TCGA-FW-A3R5-06 19 22785631 22785631 G A AC011467.1 3'Flank 0.38 TCGA-FW-A3R5-06 19 22817263 22817263 G A ZNF492 5'UTR 0.31 TCGA-FW-A3R5-06 19 22846811 22846811 C T ZNF492 Nonsense_Mutation p.Q114* 0.29 TCGA-FW-A3R5-06 19 22940539 22940539 C T ZNF99 Silent p.E724E 0.24 TCGA-FW-A3R5-06 19 22940754 22940754 C T ZNF99 Missense_Mutation p.E653K 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 19 22940775 22940775 C T ZNF99 Missense_Mutation p.E646K 0.27 deleterious(0.03) benign(0.05) TCGA-FW-A3R5-06 19 22940784 22940784 G A ZNF99 Missense_Mutation p.H643Y 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 19 22940841 22940841 C T ZNF99 Missense_Mutation p.E624K 0.19 tolerated(0.53) probably_damaging(0.998) TCGA-FW-A3R5-06 19 22941084 22941084 C T ZNF99 Missense_Mutation p.G543S 0.18 deleterious(0.01) probably_damaging(0.92) TCGA-FW-A3R5-06 19 22941460 22941460 T C ZNF99 Silent p.V417V 0.22 TCGA-FW-A3R5-06 19 22941645 22941645 G A ZNF99 Missense_Mutation p.L356F 0.28 tolerated(0.09) possibly_damaging(0.775) TCGA-FW-A3R5-06 19 23299893 23299893 G A ZNF730 5'UTR 0.32 TCGA-FW-A3R5-06 19 23318846 23318846 G A ZNF730 Splice_Site p.X76_splice 0.24 TCGA-FW-A3R5-06 19 23329128 23329128 G A ZNF730 Missense_Mutation p.E428K 0.28 tolerated(0.06) benign(0.144) TCGA-FW-A3R5-06 19 23405633 23405633 G A ZNF724P Missense_Mutation p.H472Y 0.24 deleterious(0.02) probably_damaging(0.923) TCGA-FW-A3R5-06 19 2352957 2352957 C T LLfos-48D6.1 Intron 0.29 TCGA-FW-A3R5-06 19 23542422 23542422 G A ZNF91 Missense_Mutation p.A1120V 0.13 tolerated(0.53) possibly_damaging(0.616) TCGA-FW-A3R5-06 19 23543378 23543378 T G ZNF91 Missense_Mutation p.E801D 0.19 tolerated(0.2) probably_damaging(0.994) TCGA-FW-A3R5-06 19 23543653 23543653 C T ZNF91 Missense_Mutation p.G710R 0.15 tolerated(0.1) probably_damaging(0.932) TCGA-FW-A3R5-06 19 23836763 23836763 G A ZNF675 Silent p.S324S 0.15 TCGA-FW-A3R5-06 19 23926680 23926680 C T ZNF681 Missense_Mutation p.G558R 0.07 tolerated(0.07) probably_damaging(0.996) TCGA-FW-A3R5-06 19 23927219 23927219 G A ZNF681 Missense_Mutation p.S378F 0.27 tolerated(0.26) possibly_damaging(0.64) TCGA-FW-A3R5-06 19 24010549 24010549 G A RPSAP58 Missense_Mutation p.E196K 0.26 tolerated(0.06) benign(0.018) TCGA-FW-A3R5-06 19 2401996 2401996 G A TMPRSS9 Missense_Mutation p.E146K 0.22 tolerated(0.12) benign(0.103) TCGA-FW-A3R5-06 19 2421882 2421882 G A TMPRSS9 Missense_Mutation p.E695K 0.38 tolerated(0.06) possibly_damaging(0.85) TCGA-FW-A3R5-06 19 24309442 24309442 G A ZNF254 Missense_Mutation p.E214K 0.18 tolerated(0.06) benign(0.141) TCGA-FW-A3R5-06 19 2515055 2515055 G A GNG7 Missense_Mutation p.P58S 0.26 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 19 2733206 2733206 G A SLC39A3 Missense_Mutation p.S163L 0.30 tolerated(0.09) benign(0.129) TCGA-FW-A3R5-06 19 2790449 2790449 C T THOP1 Missense_Mutation p.S16F 0.33 deleterious(0.05) benign(0.352) TCGA-FW-A3R5-06 19 282190 282190 G A PPAP2C Missense_Mutation p.H242Y 0.35 deleterious(0.01) probably_damaging(0.955) TCGA-FW-A3R5-06 19 2834959 2834959 C T ZNF554 3'UTR 0.27 TCGA-FW-A3R5-06 19 2852691 2852691 C T ZNF555 Missense_Mutation p.P210S 0.33 tolerated(1) probably_damaging(0.999) TCGA-FW-A3R5-06 19 2853194 2853194 C T ZNF555 Silent p.F377F 0.20 TCGA-FW-A3R5-06 19 2876142 2876142 C T ZNF556 Missense_Mutation p.S61F 0.22 tolerated(0.62) benign(0) TCGA-FW-A3R5-06 19 2877742 2877742 G A ZNF556 Silent p.K262K 0.27 TCGA-FW-A3R5-06 19 288132 288132 G A PPAP2C Missense_Mutation p.P52L 0.32 deleterious(0) possibly_damaging(0.796) TCGA-FW-A3R5-06 19 2936611 2936611 G A ZNF77 Silent p.F74F 0.34 TCGA-FW-A3R5-06 19 2989206 2989206 C T TLE6 Silent p.S296S 0.26 TCGA-FW-A3R5-06 19 3005791 3005791 G A TLE2 Missense_Mutation p.A559V 0.10 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 19 3006496 3006496 C T TLE2 Silent p.T474T 0.23 TCGA-FW-A3R5-06 19 30099604 30099604 C T POP4 Silent p.D16D 0.08 TCGA-FW-A3R5-06 19 30106194 30106194 C T POP4 Silent p.G190G 0.32 TCGA-FW-A3R5-06 19 3028922 3028922 C T TLE2 5'UTR 0.17 TCGA-FW-A3R5-06 19 3055716 3055716 G A AES Silent p.I148I 0.27 TCGA-FW-A3R5-06 19 30934525 30934525 C T ZNF536 Missense_Mutation p.P19L 0.29 tolerated_low_confidence(0.09) benign(0.012) TCGA-FW-A3R5-06 19 30934539 30934539 C T ZNF536 Missense_Mutation p.P24S 0.24 tolerated_low_confidence(0.32) benign(0.004) TCGA-FW-A3R5-06 19 30935684 30935684 C T ZNF536 Silent p.S405S 0.09 TCGA-FW-A3R5-06 19 30935849 30935849 G A ZNF536 Missense_Mutation p.M460I 0.21 deleterious(0.05) benign(0.001) TCGA-FW-A3R5-06 19 30935870 30935870 G A ZNF536 Silent p.G467G 0.21 TCGA-FW-A3R5-06 19 30935936 30935936 G A ZNF536 Silent p.L489L 0.32 TCGA-FW-A3R5-06 19 30935937 30935937 G A ZNF536 Missense_Mutation p.G490R 0.32 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 19 30936219 30936219 C T ZNF536 Missense_Mutation p.H584Y 0.22 deleterious(0.01) benign(0.178) TCGA-FW-A3R5-06 19 31039402 31039402 C T ZNF536 Missense_Mutation p.P959L 0.25 tolerated(0.3) benign(0) TCGA-FW-A3R5-06 19 31039417 31039417 C T ZNF536 Missense_Mutation p.S964F 0.15 deleterious_low_confidence(0.02) benign(0.068) TCGA-FW-A3R5-06 19 31039962 31039962 C T ZNF536 Missense_Mutation p.P1146S 0.22 tolerated_low_confidence(0.4) benign(0.055) TCGA-FW-A3R5-06 19 31040194 31040194 C T ZNF536 Missense_Mutation p.S1223L 0.37 tolerated_low_confidence(0.14) benign(0.006) TCGA-FW-A3R5-06 19 3119345 3119345 C T GNA11 Missense_Mutation p.P293S 0.30 deleterious(0.05) possibly_damaging(0.453) TCGA-FW-A3R5-06 19 313576 313576 G A MIER2 Silent p.F241F 0.28 TCGA-FW-A3R5-06 19 3151807 3151807 C T GNA15 Silent p.C196C 0.07 TCGA-FW-A3R5-06 19 3155824 3155824 C T GNA15 Silent p.I206I 0.27 TCGA-FW-A3R5-06 19 3157830 3157830 G A GNA15 Silent p.E283E 0.30 TCGA-FW-A3R5-06 19 31770514 31770514 G A TSHZ3 Missense_Mutation p.S62F 0.52 deleterious(0) possibly_damaging(0.77) TCGA-FW-A3R5-06 19 326596 326596 G A MIER2 Missense_Mutation p.R166C 0.25 tolerated(0.17) benign(0.004) TCGA-FW-A3R5-06 19 327976 327976 G A MIER2 Missense_Mutation p.P86L 0.42 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 3284932 3284932 C T CELF5 Missense_Mutation p.P358S 0.12 tolerated(0.11) benign(0) TCGA-FW-A3R5-06 19 32902290 32902290 C T DPY19L3 Intron 0.36 TCGA-FW-A3R5-06 19 32954811 32954811 C T DPY19L3 Silent p.F494F 0.31 TCGA-FW-A3R5-06 19 33390817 33390817 G A CEP89 Silent p.N607N 0.26 TCGA-FW-A3R5-06 19 33517487 33517487 G A RHPN2 Silent p.F79F 0.62 TCGA-FW-A3R5-06 19 33587345 33587345 C T GPATCH1 Missense_Mutation p.S282L 0.15 deleterious(0.02) possibly_damaging(0.492) TCGA-FW-A3R5-06 19 33597733 33597733 C T GPATCH1 Missense_Mutation p.P405S 0.14 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 19 33603471 33603471 C T GPATCH1 Missense_Mutation p.P615L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 33623141 33623141 C T WDR88 Silent p.S22S 0.10 TCGA-FW-A3R5-06 19 33623339 33623339 C T WDR88 Silent p.D88D 0.23 TCGA-FW-A3R5-06 19 33639752 33639752 C T WDR88 Silent p.F205F 0.28 TCGA-FW-A3R5-06 19 33696189 33696189 C T LRP3 Silent p.F171F 0.23 TCGA-FW-A3R5-06 19 33696190 33696190 C T LRP3 Missense_Mutation p.R172C 0.21 deleterious(0.01) possibly_damaging(0.659) TCGA-FW-A3R5-06 19 33696629 33696629 G A LRP3 Missense_Mutation p.G318E 0.11 tolerated(0.25) probably_damaging(1) TCGA-FW-A3R5-06 19 33698492 33698492 C T LRP3 3'UTR 0.35 TCGA-FW-A3R5-06 19 33702229 33702229 G A SLC7A10 Silent p.F306F 0.23 TCGA-FW-A3R5-06 19 34180108 34180108 G A CHST8 5'UTR 0.24 TCGA-FW-A3R5-06 19 34180240 34180240 C T CHST8 Missense_Mutation p.L25F 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 34180243 34180243 C T CHST8 Missense_Mutation p.L26F 0.16 deleterious(0.04) possibly_damaging(0.724) TCGA-FW-A3R5-06 19 34263239 34263239 C T CHST8 Silent p.S182S 0.10 TCGA-FW-A3R5-06 19 3449086 3449086 C T NFIC Missense_Mutation p.R345C 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 34699853 34699853 C T LSM14A Silent p.S145S 0.21 TCGA-FW-A3R5-06 19 35085210 35085210 G A SCGB2B2 Missense_Mutation p.S39F 0.18 tolerated_low_confidence(0.08) benign(0.337) TCGA-FW-A3R5-06 19 35251398 35251398 G A ZNF599 Missense_Mutation p.S103F 0.30 tolerated(0.52) benign(0.034) TCGA-FW-A3R5-06 19 35420799 35420799 C T ZNF30 5'UTR 0.25 TCGA-FW-A3R5-06 19 35449721 35449721 G A ZNF792 Silent p.F346F 0.34 TCGA-FW-A3R5-06 19 35450246 35450246 G A ZNF792 Silent p.F171F 0.35 TCGA-FW-A3R5-06 19 3547939 3547939 C T MFSD12 Silent p.E248E 0.26 TCGA-FW-A3R5-06 19 3547941 3547941 C T MFSD12 Missense_Mutation p.E248K 0.26 benign(0.216) TCGA-FW-A3R5-06 19 35524582 35524582 C T SCN1B Silent p.F129F 0.30 TCGA-FW-A3R5-06 19 35550838 35550838 C T HPN Silent p.F117F 0.30 TCGA-FW-A3R5-06 19 35551337 35551337 C T HPN Missense_Mutation p.R181C 0.37 tolerated(0.07) probably_damaging(0.934) TCGA-FW-A3R5-06 19 35551382 35551382 G A HPN Missense_Mutation p.D196N 0.29 tolerated(0.31) benign(0.006) TCGA-FW-A3R5-06 19 35551632 35551632 G A HPN Missense_Mutation p.G241E 0.23 tolerated(0.11) benign(0.133) TCGA-FW-A3R5-06 19 35551633 35551633 G A HPN Silent p.G241G 0.23 TCGA-FW-A3R5-06 19 35556465 35556465 G A HPN Silent p.Q310Q 0.38 TCGA-FW-A3R5-06 19 35556516 35556516 C T HPN Silent p.F327F 0.35 TCGA-FW-A3R5-06 19 3557246 3557246 G A MFSD12 Silent p.A52A 0.33 TCGA-FW-A3R5-06 19 35617264 35617264 G A LGI4 Silent p.I403I 0.32 TCGA-FW-A3R5-06 19 35622914 35622914 G A LGI4 Missense_Mutation p.S116F 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 35646431 35646431 C T FXYD5 5'UTR 0.20 TCGA-FW-A3R5-06 19 35657175 35657175 G A FXYD5 Missense_Mutation p.R145Q 0.21 tolerated(0.13) probably_damaging(0.988) TCGA-FW-A3R5-06 19 35657304 35657304 G A FXYD5 Intron 0.09 TCGA-FW-A3R5-06 19 35660507 35660507 C T FXYD5 Missense_Mutation p.R176C 0.29 tolerated(0.08) benign(0.35) TCGA-FW-A3R5-06 19 35715768 35715768 G A FAM187B Missense_Mutation p.S357F 0.39 tolerated(0.14) benign(0.04) TCGA-FW-A3R5-06 19 35773543 35773543 G A HAMP Silent p.L21L 0.33 TCGA-FW-A3R5-06 19 3578095 3578095 C T HMG20B Silent p.L309L 0.18 TCGA-FW-A3R5-06 19 35786520 35786520 C T MAG Silent p.S17S 0.33 TCGA-FW-A3R5-06 19 35786728 35786728 G A MAG Missense_Mutation p.G87S 0.25 deleterious(0.01) possibly_damaging(0.813) TCGA-FW-A3R5-06 19 35800925 35800925 C T MAG Silent p.F460F 0.18 TCGA-FW-A3R5-06 19 35802840 35802840 C T MAG Missense_Mutation p.P546S 0.23 tolerated(0.63) benign(0.002) TCGA-FW-A3R5-06 19 35803183 35803183 G A MAG Intron 0.19 TCGA-FW-A3R5-06 19 35803197 35803197 C T MAG Intron 0.30 TCGA-FW-A3R5-06 19 35804209 35804209 G A MAG Missense_Mutation p.G578E 0.15 tolerated(0.06) possibly_damaging(0.656) TCGA-FW-A3R5-06 19 35804360 35804360 G A MAG 3'UTR 0.30 TCGA-FW-A3R5-06 19 35804433 35804433 C T MAG 3'UTR 0.45 TCGA-FW-A3R5-06 19 35823538 35823538 G A CD22 Nonsense_Mutation p.W41* 0.27 TCGA-FW-A3R5-06 19 35827133 35827133 G A CD22 Missense_Mutation p.E203K 0.31 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 19 35829246 35829246 C T CD22 Silent p.L387L 0.26 TCGA-FW-A3R5-06 19 35829247 35829247 C T CD22 Missense_Mutation p.P388S 0.27 tolerated(0.48) benign(0.05) TCGA-FW-A3R5-06 19 35831879 35831879 C T CD22 Missense_Mutation p.P449S 0.25 deleterious(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 19 35832298 35832298 C T CD22 Silent p.H520H 0.42 TCGA-FW-A3R5-06 19 35832673 35832673 C T CD22 Silent p.L614L 0.21 TCGA-FW-A3R5-06 19 35842700 35842700 C T FFAR1 Silent p.F82F 0.29 TCGA-FW-A3R5-06 19 35842810 35842810 G A FFAR1 Missense_Mutation p.R119K 0.29 tolerated(0.41) benign(0.388) TCGA-FW-A3R5-06 19 35940700 35940700 C T FFAR2 Silent p.A28A 0.14 TCGA-FW-A3R5-06 19 35993773 35993773 G A DMKN Missense_Mutation p.P384S 0.28 tolerated(0.06) unknown(0) TCGA-FW-A3R5-06 19 3600303 3600303 G A TBXA2R Silent p.V110V 0.36 TCGA-FW-A3R5-06 19 3600649 3600649 G A TBXA2R 5'UTR 0.12 TCGA-FW-A3R5-06 19 36017667 36017667 C T SBSN Missense_Mutation p.G506E 0.10 tolerated(0.12) probably_damaging(0.988) TCGA-FW-A3R5-06 19 36050801 36050801 G A ATP4A Missense_Mutation p.A321V 0.34 deleterious(0.02) probably_damaging(0.934) TCGA-FW-A3R5-06 19 36051420 36051420 G A ATP4A Missense_Mutation p.P211L 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 36054167 36054167 C T ATP4A Missense_Mutation p.D54N 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 19 36110939 36110939 C T HAUS5 Missense_Mutation p.P478S 0.29 tolerated(0.29) probably_damaging(1) TCGA-FW-A3R5-06 19 36114022 36114022 C T HAUS5 3'UTR 0.30 TCGA-FW-A3R5-06 19 36168934 36168934 G A UPK1A 3'UTR 0.29 TCGA-FW-A3R5-06 19 36207515 36207515 C T ZBTB32 Missense_Mutation p.S442F 0.32 deleterious(0.01) possibly_damaging(0.788) TCGA-FW-A3R5-06 19 36212573 36212573 C T KMT2B Missense_Mutation p.A775V 0.16 benign(0.045) TCGA-FW-A3R5-06 19 36215909 36215909 C T KMT2B Missense_Mutation p.P1150L 0.42 benign(0.339) TCGA-FW-A3R5-06 19 36216190 36216190 C T KMT2B Missense_Mutation p.P1200S 0.33 probably_damaging(0.968) TCGA-FW-A3R5-06 19 36218811 36218811 C T KMT2B Silent p.I1474I 0.40 TCGA-FW-A3R5-06 19 36223190 36223190 C T KMT2B Missense_Mutation p.R1914C 0.32 probably_damaging(0.973) TCGA-FW-A3R5-06 19 36224722 36224722 C T KMT2B Missense_Mutation p.P2370S 0.33 benign(0) TCGA-FW-A3R5-06 19 36227703 36227703 C T KMT2B Silent p.F2424F 0.30 TCGA-FW-A3R5-06 19 36228084 36228084 C T KMT2B Silent p.F2490F 0.40 TCGA-FW-A3R5-06 19 36233574 36233574 G A U2AF1L4 Silent p.S178S 0.20 TCGA-FW-A3R5-06 19 3623996 3623996 G A CACTIN Missense_Mutation p.P111L 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 19 362409 362409 C T THEG Missense_Mutation p.D311N 0.30 tolerated(0.22) benign(0.056) TCGA-FW-A3R5-06 19 36255778 36255778 C T C19orf55 Silent p.S189S 0.18 TCGA-FW-A3R5-06 19 36255969 36255969 C T C19orf55 Missense_Mutation p.P221S 0.21 tolerated(0.46) possibly_damaging(0.904) TCGA-FW-A3R5-06 19 36271691 36271691 C T ARHGAP33 Missense_Mutation p.P268S 0.24 tolerated_low_confidence(0.18) possibly_damaging(0.803) TCGA-FW-A3R5-06 19 36273299 36273299 C T ARHGAP33 Silent p.I370I 0.21 TCGA-FW-A3R5-06 19 36278255 36278255 C T ARHGAP33 Missense_Mutation p.P769S 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 36278576 36278576 C T ARHGAP33 Missense_Mutation p.P876S 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 36278658 36278658 C T ARHGAP33 Missense_Mutation p.S903F 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 36291092 36291092 G C PRODH2 Missense_Mutation p.P487A 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 36303772 36303772 C T PRODH2 Missense_Mutation p.G55E 0.26 tolerated_low_confidence(0.53) benign(0.186) TCGA-FW-A3R5-06 19 36322207 36322207 C T NPHS1 Silent p.Q1126Q 0.28 TCGA-FW-A3R5-06 19 36330297 36330297 C T NPHS1 Missense_Mutation p.G984E 0.22 tolerated(0.06) possibly_damaging(0.72) TCGA-FW-A3R5-06 19 36330466 36330466 G A NPHS1 Silent p.T953T 0.17 TCGA-FW-A3R5-06 19 36330510 36330510 C T NPHS1 Splice_Site p.X939_splice 0.19 TCGA-FW-A3R5-06 19 36332717 36332717 G A NPHS1 Silent p.T905T 0.28 TCGA-FW-A3R5-06 19 36340552 36340552 C T NPHS1 Silent p.V204V 0.23 TCGA-FW-A3R5-06 19 36342177 36342177 G A NPHS1 Silent p.I128I 0.33 TCGA-FW-A3R5-06 19 36348040 36348040 C T KIRREL2 Missense_Mutation p.P7S 0.29 tolerated(0.15) benign(0.001) TCGA-FW-A3R5-06 19 36349316 36349316 C T KIRREL2 Missense_Mutation p.S73F 0.29 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3R5-06 19 36351438 36351438 C T KIRREL2 Missense_Mutation p.S266F 0.22 tolerated(0.74) benign(0.01) TCGA-FW-A3R5-06 19 36362863 36362863 G A APLP1 Missense_Mutation p.E259K 0.21 tolerated(0.1) probably_damaging(0.996) TCGA-FW-A3R5-06 19 36370056 36370056 C T APLP1 Silent p.V598V 0.35 TCGA-FW-A3R5-06 19 36370284 36370284 G A APLP1 Missense_Mutation p.E633K 0.24 tolerated(1) possibly_damaging(0.646) TCGA-FW-A3R5-06 19 36387009 36387009 G A NFKBID Missense_Mutation p.A160V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 19 36431004 36431004 C T LRFN3 Missense_Mutation p.S226F 0.26 deleterious(0.02) possibly_damaging(0.652) TCGA-FW-A3R5-06 19 3643301 3643301 G A PIP5K1C Missense_Mutation p.S530F 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-FW-A3R5-06 19 36501769 36501769 G A ALKBH6 Intron 0.28 TCGA-FW-A3R5-06 19 3656551 3656551 G A PIP5K1C Missense_Mutation p.S158F 0.28 deleterious(0) possibly_damaging(0.836) TCGA-FW-A3R5-06 19 36616633 36616633 C T TBCB Silent p.V228V 0.30 TCGA-FW-A3R5-06 19 36858802 36858802 G A ZFP14 5'UTR 0.23 TCGA-FW-A3R5-06 19 36884731 36884731 C T ZFP82 Missense_Mutation p.E171K 0.10 tolerated(0.37) benign(0.168) TCGA-FW-A3R5-06 19 36939832 36939832 G A ZNF566 3'UTR 0.29 TCGA-FW-A3R5-06 19 37005709 37005709 G A ZNF260 Silent p.A144A 0.31 TCGA-FW-A3R5-06 19 37100898 37100898 C T ZNF382 Nonsense_Mutation p.Q28* 0.32 TCGA-FW-A3R5-06 19 37130142 37130142 G A ZNF461 Missense_Mutation p.R369C 0.29 tolerated(0.25) probably_damaging(0.93) TCGA-FW-A3R5-06 19 371314 371314 G A THEG Missense_Mutation p.P215L 0.32 deleterious(0) possibly_damaging(0.804) TCGA-FW-A3R5-06 19 37211306 37211306 C T ZNF567 Silent p.S529S 0.08 TCGA-FW-A3R5-06 19 37240729 37240729 G A ZNF850 Missense_Mutation p.R405C 0.50 tolerated(0.17) benign(0.143) TCGA-FW-A3R5-06 19 3730080 3730080 C T TJP3 Silent p.S80S 0.24 TCGA-FW-A3R5-06 19 3730588 3730588 G A TJP3 Missense_Mutation p.G175D 0.21 tolerated(0.21) benign(0.014) TCGA-FW-A3R5-06 19 3731987 3731987 G A TJP3 Missense_Mutation p.G232D 0.19 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 19 3740659 3740659 C T TJP3 Missense_Mutation p.R590C 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 3740730 3740730 C T TJP3 Silent p.Y613Y 0.26 TCGA-FW-A3R5-06 19 375943 375943 C T THEG Missense_Mutation p.G10R 0.15 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 19 3762665 3762665 G A MRPL54 5'UTR 0.33 TCGA-FW-A3R5-06 19 37643428 37643428 C T ZNF585A Missense_Mutation p.R403Q 0.24 deleterious(0.02) probably_damaging(0.93) TCGA-FW-A3R5-06 19 37677770 37677770 G A ZNF585B Silent p.F223F 0.32 TCGA-FW-A3R5-06 19 37680644 37680644 G A ZNF585B Missense_Mutation p.P71S 0.31 tolerated(0.73) benign(0.048) TCGA-FW-A3R5-06 19 3779070 3779070 G A MATK Silent p.L374L 0.23 TCGA-FW-A3R5-06 19 3783164 3783164 C T MATK Silent p.R213R 0.18 TCGA-FW-A3R5-06 19 3784165 3784165 C T MATK Missense_Mutation p.E108K 0.24 tolerated(0.61) benign(0.184) TCGA-FW-A3R5-06 19 3784232 3784232 C T MATK Silent p.K85K 0.22 TCGA-FW-A3R5-06 19 37879797 37879797 C T ZNF527 Silent p.A282A 0.25 TCGA-FW-A3R5-06 19 37904945 37904945 C T ZNF569 Silent p.L205L 0.28 TCGA-FW-A3R5-06 19 37905027 37905027 G A ZNF569 Missense_Mutation p.S178L 0.38 tolerated(0.14) benign(0.001) TCGA-FW-A3R5-06 19 37975632 37975632 C T ZNF570 Missense_Mutation p.R370C 0.08 deleterious(0.05) probably_damaging(0.993) TCGA-FW-A3R5-06 19 38102515 38102515 C T ZNF540 Missense_Mutation p.R112C 0.11 deleterious(0.04) benign(0.006) TCGA-FW-A3R5-06 19 3811344 3811344 C T ZFR2 Missense_Mutation p.D755N 0.33 deleterious(0.02) possibly_damaging(0.464) TCGA-FW-A3R5-06 19 38229537 38229537 G A ZNF573 Silent p.A618A 0.18 TCGA-FW-A3R5-06 19 38230103 38230103 T C ZNF573 Missense_Mutation p.K430E 0.30 tolerated(0.1) benign(0.009) TCGA-FW-A3R5-06 19 38230307 38230307 C T ZNF573 Missense_Mutation p.E362K 0.19 tolerated(0.11) benign(0.012) TCGA-FW-A3R5-06 19 3823288 3823288 C T ZFR2 Missense_Mutation p.G443S 0.25 tolerated(1) benign(0.041) TCGA-FW-A3R5-06 19 3827613 3827613 C T ZFR2 Silent p.K297K 0.33 TCGA-FW-A3R5-06 19 3834887 3834887 G A ZFR2 Missense_Mutation p.P50S 0.36 tolerated(0.47) benign(0.17) TCGA-FW-A3R5-06 19 3834911 3834911 C T ZFR2 Missense_Mutation p.D42N 0.40 tolerated(0.55) benign(0.021) TCGA-FW-A3R5-06 19 38572881 38572881 C T SIPA1L3 Missense_Mutation p.R226C 0.22 deleterious(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 19 38573155 38573155 C T SIPA1L3 Missense_Mutation p.S317F 0.17 tolerated(0.8) benign(0.001) TCGA-FW-A3R5-06 19 38573709 38573709 C T SIPA1L3 Missense_Mutation p.R502C 0.32 deleterious(0.03) benign(0.032) TCGA-FW-A3R5-06 19 38573729 38573729 C T SIPA1L3 Silent p.F508F 0.38 TCGA-FW-A3R5-06 19 38610501 38610501 G A SIPA1L3 Silent p.R949R 0.24 TCGA-FW-A3R5-06 19 38655202 38655202 C T SIPA1L3 Silent p.F1288F 0.08 TCGA-FW-A3R5-06 19 38692558 38692558 C T SIPA1L3 Missense_Mutation p.P1681S 0.25 tolerated(0.58) benign(0.004) TCGA-FW-A3R5-06 19 38795318 38795318 G A C19orf33 Missense_Mutation p.D65N 0.34 tolerated_low_confidence(0.23) benign(0.003) TCGA-FW-A3R5-06 19 38847158 38847158 G A CATSPERG Silent p.Q390Q 0.22 TCGA-FW-A3R5-06 19 38855747 38855747 C T CATSPERG Missense_Mutation p.P868L 0.29 tolerated(1) benign(0) TCGA-FW-A3R5-06 19 38858758 38858758 C T CATSPERG Missense_Mutation p.H1001Y 0.31 tolerated(0.8) benign(0.291) TCGA-FW-A3R5-06 19 38860616 38860616 C T CATSPERG Missense_Mutation p.L1009F 0.30 deleterious(0) possibly_damaging(0.765) TCGA-FW-A3R5-06 19 38861371 38861371 C T CATSPERG Missense_Mutation p.S1140F 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.683) TCGA-FW-A3R5-06 19 38861479 38861479 G A CATSPERG 3'UTR 0.24 TCGA-FW-A3R5-06 19 38861520 38861520 C T CATSPERG 3'UTR 0.36 TCGA-FW-A3R5-06 19 38877095 38877095 C T GGN Silent p.G269G 0.27 TCGA-FW-A3R5-06 19 38910780 38910780 G T RASGRP4 Missense_Mutation p.S167Y 0.12 tolerated(0.28) benign(0.09) TCGA-FW-A3R5-06 19 38934840 38934840 G A RYR1 Missense_Mutation p.G159E 0.35 probably_damaging(1) TCGA-FW-A3R5-06 19 38935268 38935268 C T RYR1 Silent p.F194F 0.32 TCGA-FW-A3R5-06 19 38937179 38937179 C T RYR1 Silent p.S233S 0.25 TCGA-FW-A3R5-06 19 38942416 38942416 C T RYR1 Nonsense_Mutation p.Q379* 0.21 TCGA-FW-A3R5-06 19 38949934 38949934 G A RYR1 Silent p.L772L 0.24 TCGA-FW-A3R5-06 19 38951115 38951115 C T RYR1 Missense_Mutation p.H821Y 0.26 possibly_damaging(0.474) TCGA-FW-A3R5-06 19 38954452 38954452 G A RYR1 Silent p.E916E 0.29 TCGA-FW-A3R5-06 19 38958423 38958423 G A RYR1 Missense_Mutation p.E1118K 0.30 benign(0.216) TCGA-FW-A3R5-06 19 38959746 38959746 C T RYR1 Silent p.S1174S 0.27 TCGA-FW-A3R5-06 19 38959949 38959949 C T RYR1 Silent p.F1187F 0.31 TCGA-FW-A3R5-06 19 38964208 38964208 G A RYR1 Silent p.E1319E 0.33 TCGA-FW-A3R5-06 19 38968367 38968367 G A RYR1 Silent p.R1437R 0.20 TCGA-FW-A3R5-06 19 38976471 38976471 C T RYR1 Missense_Mutation p.R1726C 0.28 benign(0.269) TCGA-FW-A3R5-06 19 38976513 38976513 G A RYR1 Missense_Mutation p.E1740K 0.21 benign(0.132) TCGA-FW-A3R5-06 19 38976675 38976675 G A RYR1 Missense_Mutation p.A1794T 0.26 benign(0.316) TCGA-FW-A3R5-06 19 38983185 38983185 C T RYR1 Silent p.S2061S 0.09 TCGA-FW-A3R5-06 19 38990558 38990558 G A RYR1 Missense_Mutation p.E2409K 0.28 benign(0.007) TCGA-FW-A3R5-06 19 38993182 38993182 G A RYR1 Silent p.L2550L 0.15 TCGA-FW-A3R5-06 19 38995970 38995970 G A RYR1 Missense_Mutation p.G2778R 0.35 benign(0.011) TCGA-FW-A3R5-06 19 39001159 39001159 G A RYR1 Missense_Mutation p.R2985Q 0.15 benign(0.014) TCGA-FW-A3R5-06 19 39008129 39008129 C T RYR1 Silent p.I3272I 0.40 TCGA-FW-A3R5-06 19 39008179 39008179 C T RYR1 Missense_Mutation p.P3289L 0.38 benign(0.043) TCGA-FW-A3R5-06 19 39019006 39019006 C T RYR1 Missense_Mutation p.R3629W 0.22 benign(0.136) TCGA-FW-A3R5-06 19 39019623 39019623 G A RYR1 Silent p.E3689E 0.39 TCGA-FW-A3R5-06 19 39023355 39023355 G A RYR1 Silent p.E3746E 0.28 TCGA-FW-A3R5-06 19 39039051 39039051 C T RYR1 Silent p.D4091D 0.36 TCGA-FW-A3R5-06 19 3905604 3905604 G A ATCAY Silent p.E103E 0.29 TCGA-FW-A3R5-06 19 3905638 3905638 G A ATCAY Missense_Mutation p.E115K 0.27 deleterious(0.05) benign(0.004) TCGA-FW-A3R5-06 19 39062705 39062705 C T RYR1 Missense_Mutation p.A4598V 0.35 unknown(0) TCGA-FW-A3R5-06 19 39066565 39066565 C T RYR1 Silent p.F4712F 0.29 TCGA-FW-A3R5-06 19 39068823 39068823 C T RYR1 Silent p.F4781F 0.13 TCGA-FW-A3R5-06 19 3907853 3907853 G A ATCAY Silent p.G160G 0.35 TCGA-FW-A3R5-06 19 39087996 39087996 C T MAP4K1 Missense_Mutation p.D603N 0.09 deleterious(0.03) benign(0.304) TCGA-FW-A3R5-06 19 39228192 39228192 C T CAPN12 Missense_Mutation p.G351E 0.34 tolerated(0.27) probably_damaging(0.911) TCGA-FW-A3R5-06 19 3924748 3924748 T A ATCAY 3'UTR 0.38 TCGA-FW-A3R5-06 19 39292360 39292360 G A LGALS4 3'UTR 0.30 TCGA-FW-A3R5-06 19 39336578 39336578 G A HNRNPL Missense_Mutation p.S180F 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 19 39384091 39384091 G A SIRT2 Silent p.T63T 0.33 TCGA-FW-A3R5-06 19 39384092 39384092 G A SIRT2 Missense_Mutation p.T63I 0.33 deleterious(0) benign(0.371) TCGA-FW-A3R5-06 19 39396066 39396066 C T NFKBIB Silent p.P170P 0.29 TCGA-FW-A3R5-06 19 39576015 39576015 C T PAPL Missense_Mutation p.H36Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 19 39660289 39660289 C T PAK4 Silent p.F32F 0.24 TCGA-FW-A3R5-06 19 39691306 39691306 C T NCCRP1 Silent p.F246F 0.29 TCGA-FW-A3R5-06 19 39735067 39735067 C T IFNL3 Missense_Mutation p.R83K 0.14 tolerated(0.33) benign(0.005) TCGA-FW-A3R5-06 19 39759326 39759326 G A IFNL2 Missense_Mutation p.G7E 0.08 tolerated(0.7) possibly_damaging(0.448) TCGA-FW-A3R5-06 19 39787205 39787205 G A IFNL1 Silent p.A48A 0.28 TCGA-FW-A3R5-06 19 39798511 39798511 C T LRFN1 Missense_Mutation p.G693E 0.33 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 19 39798741 39798741 G A LRFN1 Silent p.A616A 0.21 TCGA-FW-A3R5-06 19 39799066 39799066 C T LRFN1 Missense_Mutation p.R508Q 0.27 deleterious(0.01) probably_damaging(0.914) TCGA-FW-A3R5-06 19 39804951 39804951 C T LRFN1 Silent p.G342G 0.47 TCGA-FW-A3R5-06 19 39906027 39906027 G A PLEKHG2 Missense_Mutation p.E143K 0.31 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 19 39913526 39913526 C T PLEKHG2 Missense_Mutation p.P611L 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 39915363 39915363 C T PLEKHG2 Missense_Mutation p.S1197L 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 19 39915756 39915756 C T PLEKHG2 Missense_Mutation p.P1328L 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.743) TCGA-FW-A3R5-06 19 39959963 39959963 C T SUPT5H Silent p.L433L 0.27 TCGA-FW-A3R5-06 19 39960881 39960881 C T SUPT5H Silent p.F499F 0.29 TCGA-FW-A3R5-06 19 39963869 39963869 C T SUPT5H Missense_Mutation p.T762I 0.24 tolerated(0.47) benign(0.026) TCGA-FW-A3R5-06 19 39965022 39965022 C T SUPT5H Missense_Mutation p.P934S 0.26 tolerated(0.07) benign(0.007) TCGA-FW-A3R5-06 19 39994806 39994806 G A DLL3 Missense_Mutation p.V250I 0.30 tolerated(0.46) benign(0.005) TCGA-FW-A3R5-06 19 39994874 39994874 C T DLL3 Silent p.V272V 0.30 TCGA-FW-A3R5-06 19 39998532 39998532 C T DLL3 Missense_Mutation p.A579V 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3R5-06 19 40023290 40023290 G A EID2B Silent p.A51A 0.33 TCGA-FW-A3R5-06 19 40097942 40097942 G A LGALS13 Missense_Mutation p.R128K 0.10 tolerated(0.75) benign(0.356) TCGA-FW-A3R5-06 19 40097982 40097982 G A LGALS13 3'UTR 0.24 TCGA-FW-A3R5-06 19 40172135 40172135 G A AC093063.3 5'Flank 0.50 TCGA-FW-A3R5-06 19 40221896 40221896 G A CLC 3'UTR 0.35 TCGA-FW-A3R5-06 19 40225045 40225045 G A CLC Missense_Mutation p.R61C 0.28 tolerated(0.19) benign(0.005) TCGA-FW-A3R5-06 19 40354107 40354107 C T FCGBP 3'UTR 0.27 TCGA-FW-A3R5-06 19 40357655 40357655 C T FCGBP Missense_Mutation p.E5220K 0.30 benign(0.241) TCGA-FW-A3R5-06 19 40357727 40357727 C T FCGBP Missense_Mutation p.E5196K 0.30 benign(0.34) TCGA-FW-A3R5-06 19 40357749 40357749 G A FCGBP Silent p.S5188S 0.35 TCGA-FW-A3R5-06 19 40362803 40362803 G A FCGBP Silent p.F5089F 0.28 TCGA-FW-A3R5-06 19 40362893 40362893 G A FCGBP Silent p.P5059P 0.30 TCGA-FW-A3R5-06 19 40363885 40363885 C T FCGBP Silent p.V4919V 0.24 TCGA-FW-A3R5-06 19 40364092 40364092 G A FCGBP Silent p.A4850A 0.19 TCGA-FW-A3R5-06 19 40367775 40367775 G A FCGBP Silent p.F4395F 0.40 TCGA-FW-A3R5-06 19 40367848 40367848 G A FCGBP Missense_Mutation p.S4371F 0.35 probably_damaging(0.986) TCGA-FW-A3R5-06 19 40368832 40368832 C T FCGBP Silent p.G4172G 0.13 TCGA-FW-A3R5-06 19 40368833 40368833 C T FCGBP Missense_Mutation p.G4172E 0.13 probably_damaging(0.982) TCGA-FW-A3R5-06 19 40376444 40376444 G A FCGBP Missense_Mutation p.L3954F 0.17 possibly_damaging(0.849) TCGA-FW-A3R5-06 19 40392512 40392512 G A FCGBP Silent p.L2664L 0.10 TCGA-FW-A3R5-06 19 40411717 40411717 C T FCGBP Missense_Mutation p.R1304Q 0.28 benign(0.183) TCGA-FW-A3R5-06 19 40411940 40411940 C T FCGBP Missense_Mutation p.G1230R 0.26 probably_damaging(1) TCGA-FW-A3R5-06 19 40412180 40412180 G A FCGBP Missense_Mutation p.P1150S 0.23 probably_damaging(0.998) TCGA-FW-A3R5-06 19 40412184 40412184 G A FCGBP Silent p.G1148G 0.23 TCGA-FW-A3R5-06 19 40433119 40433119 C T FCGBP Missense_Mutation p.E384K 0.32 benign(0) TCGA-FW-A3R5-06 19 40520580 40520580 C T ZNF546 Missense_Mutation p.P468L 0.22 deleterious(0.04) probably_damaging(0.929) TCGA-FW-A3R5-06 19 40540618 40540618 G A ZNF780B Silent p.Y716Y 0.25 TCGA-FW-A3R5-06 19 40541145 40541145 G A ZNF780B Missense_Mutation p.H541Y 0.11 tolerated(0.25) benign(0.024) TCGA-FW-A3R5-06 19 40541302 40541302 A G ZNF780B Silent p.L488L 0.22 TCGA-FW-A3R5-06 19 40541451 40541451 G A ZNF780B Missense_Mutation p.H439Y 0.17 deleterious(0.01) possibly_damaging(0.684) TCGA-FW-A3R5-06 19 40698283 40698283 C T MAP3K10 Silent p.A115A 0.15 TCGA-FW-A3R5-06 19 40719431 40719431 C T MAP3K10 Silent p.F615F 0.18 TCGA-FW-A3R5-06 19 40719516 40719516 C T MAP3K10 Missense_Mutation p.P644S 0.18 tolerated(0.3) benign(0.01) TCGA-FW-A3R5-06 19 40720956 40720956 C T MAP3K10 Silent p.F874F 0.22 TCGA-FW-A3R5-06 19 40899792 40899792 G A PRX 3'UTR 0.18 TCGA-FW-A3R5-06 19 40900930 40900930 C T PRX Missense_Mutation p.G1110E 0.27 tolerated(0.1) probably_damaging(0.969) TCGA-FW-A3R5-06 19 40902441 40902441 C T PRX Silent p.P606P 0.29 TCGA-FW-A3R5-06 19 40953902 40953902 G A BLVRB Missense_Mutation p.P172L 0.22 tolerated(0.09) benign(0.185) TCGA-FW-A3R5-06 19 41000874 41000874 C T SPTBN4 Missense_Mutation p.H220Y 0.32 deleterious(0) benign(0.032) TCGA-FW-A3R5-06 19 41008108 41008108 G A SPTBN4 Nonsense_Mutation p.W324* 0.27 TCGA-FW-A3R5-06 19 41008206 41008206 C T SPTBN4 Silent p.L357L 0.30 TCGA-FW-A3R5-06 19 41010033 41010033 G A SPTBN4 Silent p.E553E 0.14 TCGA-FW-A3R5-06 19 41012157 41012157 C T SPTBN4 Silent p.S560S 0.27 TCGA-FW-A3R5-06 19 41021242 41021242 G A SPTBN4 Missense_Mutation p.M930I 0.29 deleterious(0.02) possibly_damaging(0.519) TCGA-FW-A3R5-06 19 41040073 41040073 G A SPTBN4 Silent p.E1394E 0.37 TCGA-FW-A3R5-06 19 41062004 41062004 G A SPTBN4 Missense_Mutation p.R1700Q 0.17 tolerated(0.13) possibly_damaging(0.723) TCGA-FW-A3R5-06 19 41062005 41062005 G A SPTBN4 Silent p.R1700R 0.17 TCGA-FW-A3R5-06 19 41066305 41066305 C T SPTBN4 Missense_Mutation p.P1971S 0.43 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 41066475 41066475 C T SPTBN4 Intron 0.29 TCGA-FW-A3R5-06 19 41083492 41083492 C T SHKBP1 Silent p.F72F 0.31 TCGA-FW-A3R5-06 19 41086272 41086272 C T SHKBP1 Missense_Mutation p.P148L 0.21 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 19 41099087 41099087 G A LTBP4 5'Flank 0.26 TCGA-FW-A3R5-06 19 41186939 41186939 G A NUMBL Silent p.I141I 0.33 TCGA-FW-A3R5-06 19 41188694 41188694 G A NUMBL Missense_Mutation p.S113F 0.25 tolerated(0.07) possibly_damaging(0.877) TCGA-FW-A3R5-06 19 41209632 41209632 G A ADCK4 Silent p.A235A 0.18 TCGA-FW-A3R5-06 19 41211272 41211272 G A ADCK4 Nonsense_Mutation p.R150* 0.35 TCGA-FW-A3R5-06 19 41215976 41215976 G A ADCK4 Missense_Mutation p.R119C 0.22 deleterious(0.03) benign(0.205) TCGA-FW-A3R5-06 19 41292841 41292841 C T RAB4B Silent p.A205A 0.09 TCGA-FW-A3R5-06 19 41354158 41354158 C T CYP2A6 Missense_Mutation p.G207E 0.26 benign(0.014) TCGA-FW-A3R5-06 19 41381536 41381536 C T CYP2A7 3'UTR 0.19 TCGA-FW-A3R5-06 19 41386449 41386449 C T CYP2A7 Missense_Mutation p.R143Q 0.29 deleterious(0.03) possibly_damaging(0.869) TCGA-FW-A3R5-06 19 41430259 41430259 G A CYP2B7P RNA 0.28 TCGA-FW-A3R5-06 19 41442369 41442369 G A CYP2B7P RNA 0.31 TCGA-FW-A3R5-06 19 41444953 41444953 C T CYP2B7P RNA 0.29 TCGA-FW-A3R5-06 19 41454959 41454959 G A AC092071.1 3'Flank 0.25 TCGA-FW-A3R5-06 19 41497234 41497234 C T CYP2B6 Silent p.F8F 0.29 TCGA-FW-A3R5-06 19 41510233 41510233 G A CYP2B6 Silent p.K122K 0.19 TCGA-FW-A3R5-06 19 41515243 41515243 C T CYP2B6 Silent p.T255T 0.28 TCGA-FW-A3R5-06 19 41594836 41594836 C T CYP2A13 Silent p.I61I 0.22 TCGA-FW-A3R5-06 19 41594887 41594887 C T CYP2A13 Silent p.V78V 0.22 TCGA-FW-A3R5-06 19 41628036 41628036 G A CYP2F1 Missense_Mutation p.E274K 0.31 tolerated(0.37) benign(0.014) TCGA-FW-A3R5-06 19 41628764 41628764 C T CYP2F1 Missense_Mutation p.T287I 0.24 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 19 4168353 4168353 G A CREB3L3 Silent p.E240E 0.13 TCGA-FW-A3R5-06 19 41704373 41704373 C T CYP2S1 Missense_Mutation p.P167L 0.30 tolerated(0.24) benign(0.186) TCGA-FW-A3R5-06 19 41704713 41704713 G A CYP2S1 Missense_Mutation p.V252M 0.32 deleterious(0.02) possibly_damaging(0.72) TCGA-FW-A3R5-06 19 41743987 41743987 C T AXL Missense_Mutation p.R308C 0.26 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 19 41748899 41748899 G A AXL Missense_Mutation p.R475Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 41754721 41754721 G A AXL Missense_Mutation p.M569I 0.27 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 19 41758327 41758327 C T AXL Missense_Mutation p.P595S 0.25 deleterious(0.01) possibly_damaging(0.749) TCGA-FW-A3R5-06 19 41758775 41758775 G A AXL Missense_Mutation p.R610Q 0.19 tolerated(0.64) benign(0.102) TCGA-FW-A3R5-06 19 41758873 41758873 G A AXL Splice_Site p.X642_splice 0.19 TCGA-FW-A3R5-06 19 41798316 41798316 C A HNRNPUL1 Missense_Mutation p.P389H 0.28 deleterious(0) unknown(0) TCGA-FW-A3R5-06 19 4182576 4182576 G A SIRT6 5'UTR 0.20 TCGA-FW-A3R5-06 19 42082636 42082636 C T CEACAM21 Missense_Mutation p.P4S 0.17 tolerated(0.13) possibly_damaging(0.54) TCGA-FW-A3R5-06 19 42085623 42085623 G A CEACAM21 Intron 0.19 TCGA-FW-A3R5-06 19 42085862 42085862 G A CEACAM21 Nonsense_Mutation p.W194* 0.21 TCGA-FW-A3R5-06 19 42090779 42090779 C T CEACAM21 Silent p.L260L 0.33 TCGA-FW-A3R5-06 19 42125730 42125730 G A CEACAM4 Silent p.I236I 0.30 TCGA-FW-A3R5-06 19 42133417 42133417 G A CEACAM4 5'UTR 0.32 TCGA-FW-A3R5-06 19 42133418 42133418 G A CEACAM4 5'UTR 0.30 TCGA-FW-A3R5-06 19 4217164 4217164 C T ANKRD24 Silent p.T669T 0.29 TCGA-FW-A3R5-06 19 42181311 42181311 C T CEACAM7 3'UTR 0.24 TCGA-FW-A3R5-06 19 42181336 42181336 G A CEACAM7 3'UTR 0.28 TCGA-FW-A3R5-06 19 42187864 42187864 G A CEACAM7 Silent p.L186L 0.28 TCGA-FW-A3R5-06 19 42221651 42221651 C T CEACAM5 Silent p.L412L 0.28 TCGA-FW-A3R5-06 19 4222756 4222756 C T ANKRD24 Silent p.L1087L 0.27 TCGA-FW-A3R5-06 19 42231185 42231185 G A CEACAM5 Silent p.G686G 0.28 TCGA-FW-A3R5-06 19 422388 422388 G A SHC2 Missense_Mutation p.P460S 0.31 tolerated(0.2) benign(0.147) TCGA-FW-A3R5-06 19 42300634 42300634 C T CEACAM3 Missense_Mutation p.H9Y 0.34 tolerated(0.31) benign(0.173) TCGA-FW-A3R5-06 19 4231288 4231288 C T EBI3 Silent p.S56S 0.13 TCGA-FW-A3R5-06 19 4231306 4231306 C T EBI3 Silent p.F62F 0.34 TCGA-FW-A3R5-06 19 42315285 42315285 G A CEACAM3 3'UTR 0.38 TCGA-FW-A3R5-06 19 4234802 4234802 G A EBI3 Missense_Mutation p.G173E 0.27 tolerated(0.09) probably_damaging(0.987) TCGA-FW-A3R5-06 19 42351874 42351874 C T DMRTC2 Silent p.L99L 0.35 TCGA-FW-A3R5-06 19 42354563 42354563 C T DMRTC2 Intron 0.23 TCGA-FW-A3R5-06 19 42383213 42383213 C T CD79A Missense_Mutation p.P78L 0.27 deleterious(0.04) benign(0.309) TCGA-FW-A3R5-06 19 42474456 42474456 G A ATP1A3 Missense_Mutation p.P821L 0.30 deleterious(0.02) possibly_damaging(0.768) TCGA-FW-A3R5-06 19 42482807 42482807 G A ATP1A3 Silent p.A540A 0.19 TCGA-FW-A3R5-06 19 42482862 42482862 G A ATP1A3 Missense_Mutation p.S522F 0.33 deleterious(0) probably_damaging(0.916) TCGA-FW-A3R5-06 19 42485934 42485934 G A ATP1A3 Silent p.I427I 0.28 TCGA-FW-A3R5-06 19 42489109 42489109 G A ATP1A3 Silent p.I331I 0.22 TCGA-FW-A3R5-06 19 42490089 42490089 C T ATP1A3 Missense_Mutation p.G191E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 42490090 42490090 C T ATP1A3 Missense_Mutation p.G191R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 42490132 42490132 C T ATP1A3 Missense_Mutation p.E177K 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 19 42498270 42498270 G A ATP1A3 5'UTR 0.42 TCGA-FW-A3R5-06 19 42510865 42510865 C T GRIK5 Missense_Mutation p.D657N 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 42546860 42546860 C T GRIK5 Silent p.G439G 0.29 TCGA-FW-A3R5-06 19 42563605 42563605 C T GRIK5 Missense_Mutation p.D195N 0.34 deleterious(0.02) benign(0.054) TCGA-FW-A3R5-06 19 42566673 42566673 G A GRIK5 Missense_Mutation p.P159S 0.36 tolerated(0.23) probably_damaging(0.944) TCGA-FW-A3R5-06 19 42583205 42583205 C A ZNF574 Silent p.L149L 0.38 TCGA-FW-A3R5-06 19 42584550 42584550 C T ZNF574 Missense_Mutation p.R598C 0.25 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 19 4268649 4268649 C T CCDC94 Silent p.L310L 0.24 TCGA-FW-A3R5-06 19 42713887 42713887 G A DEDD2 Missense_Mutation p.P185L 0.27 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 19 42796998 42796998 C T CIC Silent p.F1152F 0.12 TCGA-FW-A3R5-06 19 42821107 42821107 G A TMEM145 Missense_Mutation p.E298K 0.28 deleterious(0.01) benign(0.259) TCGA-FW-A3R5-06 19 4283066 4283066 G A SHD Missense_Mutation p.G140E 0.10 deleterious(0.02) benign(0.044) TCGA-FW-A3R5-06 19 4284825 4284825 G A SHD Missense_Mutation p.E214K 0.21 tolerated(0.47) benign(0.371) TCGA-FW-A3R5-06 19 42853767 42853767 C A MEGF8 Silent p.I738I 0.08 TCGA-FW-A3R5-06 19 42853768 42853768 C T MEGF8 Nonsense_Mutation p.Q739* 0.08 TCGA-FW-A3R5-06 19 42874365 42874365 C T MEGF8 Missense_Mutation p.P2220S 0.25 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 19 42880627 42880627 C T MEGF8 Silent p.P2679P 0.64 TCGA-FW-A3R5-06 19 42880695 42880695 C T MEGF8 Missense_Mutation p.T2702I 0.33 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 19 4292536 4292536 G A TMIGD2 3'UTR 0.34 TCGA-FW-A3R5-06 19 4292580 4292580 G A TMIGD2 3'UTR 0.34 TCGA-FW-A3R5-06 19 4292792 4292792 C T TMIGD2 Missense_Mutation p.G218D 0.21 tolerated(0.41) benign(0.319) TCGA-FW-A3R5-06 19 4292793 4292793 C T TMIGD2 Missense_Mutation p.G218S 0.20 tolerated(0.61) benign(0.122) TCGA-FW-A3R5-06 19 43023124 43023124 C T CEACAM1 Missense_Mutation p.D408N 0.15 tolerated(0.1) benign(0.401) TCGA-FW-A3R5-06 19 43023314 43023314 C T CEACAM1 Silent p.V344V 0.35 TCGA-FW-A3R5-06 19 43026203 43026203 C T CEACAM1 Silent p.Q192Q 0.19 TCGA-FW-A3R5-06 19 430734 430734 G A SHC2 Missense_Mutation p.S375F 0.20 tolerated(0.22) benign(0.003) TCGA-FW-A3R5-06 19 4323544 4323544 C T FSD1 Silent p.S465S 0.36 TCGA-FW-A3R5-06 19 43244581 43244581 G A PSG3 5'UTR 0.18 TCGA-FW-A3R5-06 19 43257397 43257397 C T PSG8 3'Flank 0.20 TCGA-FW-A3R5-06 19 43257499 43257499 G A PSG8 3'Flank 0.16 TCGA-FW-A3R5-06 19 43258539 43258539 G A PSG8 Missense_Mutation p.R397C 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-FW-A3R5-06 19 43259160 43259160 G A PSG8 Missense_Mutation p.P323L 0.15 tolerated(0.32) possibly_damaging(0.9) TCGA-FW-A3R5-06 19 43268136 43268136 G A PSG8 Missense_Mutation p.T121I 0.20 deleterious(0.03) probably_damaging(0.949) TCGA-FW-A3R5-06 19 43269770 43269770 G A PSG8 5'UTR 0.19 TCGA-FW-A3R5-06 19 4327185 4327185 G A STAP2 Silent p.F233F 0.13 TCGA-FW-A3R5-06 19 4333791 4333791 C T STAP2 Missense_Mutation p.G66E 0.31 tolerated(0.95) benign(0.006) TCGA-FW-A3R5-06 19 43348520 43348520 C T PSG10P RNA 0.10 TCGA-FW-A3R5-06 19 43348644 43348644 C T PSG10P RNA 0.16 TCGA-FW-A3R5-06 19 43349212 43349212 C T PSG10P RNA 0.18 TCGA-FW-A3R5-06 19 43349422 43349422 G A PSG10P RNA 0.20 TCGA-FW-A3R5-06 19 43358384 43358384 C T PSG10P RNA 0.15 TCGA-FW-A3R5-06 19 43359763 43359763 G A PSG10P RNA 0.14 TCGA-FW-A3R5-06 19 43371729 43371729 C T PSG1 3'UTR 0.40 TCGA-FW-A3R5-06 19 43372162 43372162 C T PSG1 3'UTR 0.33 TCGA-FW-A3R5-06 19 43372307 43372307 G A PSG1 Missense_Mutation p.R397C 0.31 deleterious(0) possibly_damaging(0.655) TCGA-FW-A3R5-06 19 43376150 43376150 C T PSG1 Missense_Mutation p.E160K 0.29 deleterious(0.04) benign(0.327) TCGA-FW-A3R5-06 19 43406400 43406400 G A PSG6 3'Flank 0.33 TCGA-FW-A3R5-06 19 43411806 43411806 C T PSG6 Missense_Mutation p.E303K 0.30 deleterious(0.04) possibly_damaging(0.755) TCGA-FW-A3R5-06 19 43412005 43412005 C T PSG6 Silent p.P236P 0.29 TCGA-FW-A3R5-06 19 43414954 43414954 C T PSG6 Missense_Mutation p.E162K 0.18 deleterious(0) possibly_damaging(0.794) TCGA-FW-A3R5-06 19 43420354 43420354 C T PSG6 Missense_Mutation p.G117E 0.34 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 19 43421968 43421968 C T PSG6 5'UTR 0.20 TCGA-FW-A3R5-06 19 43421981 43421981 G A PSG6 5'UTR 0.46 TCGA-FW-A3R5-06 19 43430058 43430058 C T PSG7 Silent p.G370G 0.24 TCGA-FW-A3R5-06 19 43430821 43430821 C T PSG7 Missense_Mutation p.E253K 0.16 tolerated(0.25) probably_damaging(0.996) TCGA-FW-A3R5-06 19 43430867 43430867 C T PSG7 Silent p.P237P 0.17 TCGA-FW-A3R5-06 19 43433789 43433789 C T PSG7 Missense_Mutation p.E172K 0.29 tolerated(0.1) benign(0.021) TCGA-FW-A3R5-06 19 43439744 43439744 G A PSG7 Missense_Mutation p.S81L 0.27 deleterious(0.04) benign(0.413) TCGA-FW-A3R5-06 19 43439821 43439821 G A PSG7 Silent p.V55V 0.33 TCGA-FW-A3R5-06 19 43441229 43441229 G A PSG7 5'UTR 0.12 TCGA-FW-A3R5-06 19 43441253 43441253 C T PSG7 5'UTR 0.30 TCGA-FW-A3R5-06 19 43441296 43441296 G A PSG7 5'UTR 0.31 TCGA-FW-A3R5-06 19 43519322 43519322 G A PSG11 Missense_Mutation p.R304C 0.49 deleterious(0.04) benign(0.219) TCGA-FW-A3R5-06 19 43530631 43530631 C T PSG11 5'Flank 0.13 TCGA-FW-A3R5-06 19 43576027 43576027 C T PSG2 Silent p.A263A 0.32 TCGA-FW-A3R5-06 19 43579536 43579536 G A PSG2 Missense_Mutation p.R227C 0.08 tolerated(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 19 43585168 43585168 C T PSG2 Missense_Mutation p.E99K 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 19 4365544 4365544 G A SH3GL1 Missense_Mutation p.S89L 0.26 deleterious(0.01) benign(0.028) TCGA-FW-A3R5-06 19 43679421 43679421 G A PSG5 Missense_Mutation p.R304C 0.29 deleterious(0.04) probably_damaging(0.982) TCGA-FW-A3R5-06 19 43680132 43680132 C T PSG5 Missense_Mutation p.R200K 0.24 tolerated(0.06) probably_damaging(0.956) TCGA-FW-A3R5-06 19 43680245 43680245 C T PSG5 Silent p.K162K 0.25 TCGA-FW-A3R5-06 19 43680255 43680255 C T PSG5 Missense_Mutation p.R159K 0.30 tolerated(0.54) probably_damaging(0.972) TCGA-FW-A3R5-06 19 43683251 43683251 C T PSG5 Intron 0.22 TCGA-FW-A3R5-06 19 43683254 43683254 C T PSG5 Intron 0.22 TCGA-FW-A3R5-06 19 43697322 43697322 C T PSG4 3'UTR 0.41 TCGA-FW-A3R5-06 19 43697434 43697434 C T PSG4 3'UTR 0.25 TCGA-FW-A3R5-06 19 43699232 43699232 C T PSG4 Silent p.T301T 0.10 TCGA-FW-A3R5-06 19 43699242 43699242 G A PSG4 Missense_Mutation p.P298L 0.19 tolerated(0.06) possibly_damaging(0.908) TCGA-FW-A3R5-06 19 43699252 43699252 G A PSG4 Missense_Mutation p.L295F 0.08 tolerated(0.08) possibly_damaging(0.849) TCGA-FW-A3R5-06 19 43708284 43708284 G A PSG4 Missense_Mutation p.L62F 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 19 43708292 43708292 G A PSG4 Missense_Mutation p.P59L 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 43766210 43766210 G A PSG9 Missense_Mutation p.P171S 0.29 tolerated(0.05) benign(0.26) TCGA-FW-A3R5-06 19 43771946 43771946 G A PSG9 Silent p.F140F 0.27 TCGA-FW-A3R5-06 19 43858077 43858077 G A CD177 Nonsense_Mutation p.W42* 0.32 TCGA-FW-A3R5-06 19 43858486 43858486 G A CD177 Silent p.E107E 0.27 TCGA-FW-A3R5-06 19 43859674 43859674 G A CD177 Missense_Mutation p.M129I 0.26 tolerated(0.48) benign(0) TCGA-FW-A3R5-06 19 43865643 43865643 C T CD177 3'UTR 0.12 TCGA-FW-A3R5-06 19 43965559 43965559 G A LYPD3 Missense_Mutation p.P329S 0.27 tolerated_low_confidence(0.22) probably_damaging(0.992) TCGA-FW-A3R5-06 19 44005977 44005977 C T PHLDB3 Missense_Mutation p.R148Q 0.31 deleterious(0.05) possibly_damaging(0.755) TCGA-FW-A3R5-06 19 4409622 4409622 C T CHAF1A Missense_Mutation p.P276S 0.28 tolerated(0.07) unknown(0) TCGA-FW-A3R5-06 19 44127496 44127496 C T CADM4 Missense_Mutation p.E385K 0.29 deleterious(0) possibly_damaging(0.492) TCGA-FW-A3R5-06 19 44152986 44152986 G A PLAUR 3'UTR 0.23 TCGA-FW-A3R5-06 19 44171764 44171764 G A PLAUR Silent p.L45L 0.29 TCGA-FW-A3R5-06 19 44222692 44222692 C T IRGC 5'UTR 0.23 TCGA-FW-A3R5-06 19 44222779 44222779 G A IRGC Silent p.R23R 0.32 TCGA-FW-A3R5-06 19 44223154 44223154 C T IRGC Silent p.V148V 0.16 TCGA-FW-A3R5-06 19 44223272 44223272 G A IRGC Missense_Mutation p.A188T 0.27 tolerated(0.27) benign(0.006) TCGA-FW-A3R5-06 19 44235628 44235628 G A SMG9 3'UTR 0.38 TCGA-FW-A3R5-06 19 44278350 44278350 G A KCNN4 Missense_Mutation p.A226V 0.24 deleterious(0) possibly_damaging(0.836) TCGA-FW-A3R5-06 19 44278616 44278616 G A KCNN4 Silent p.S137S 0.33 TCGA-FW-A3R5-06 19 4432134 4432134 C T CHAF1A Silent p.F711F 0.23 TCGA-FW-A3R5-06 19 4432135 4432135 C T CHAF1A Silent p.L712L 0.21 TCGA-FW-A3R5-06 19 4433534 4433534 C T CHAF1A Nonsense_Mutation p.Q891* 0.29 TCGA-FW-A3R5-06 19 44378052 44378052 C T ZNF404 Missense_Mutation p.G105E 0.21 tolerated(0.49) benign(0.004) TCGA-FW-A3R5-06 19 44418275 44418275 T A ZNF45 Missense_Mutation p.H438L 0.24 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 44418361 44418361 G A ZNF45 Silent p.G409G 0.24 TCGA-FW-A3R5-06 19 44470085 44470085 C T ZNF221 Missense_Mutation p.S144F 0.19 tolerated(0.08) benign(0.111) TCGA-FW-A3R5-06 19 44470696 44470696 C T ZNF221 Missense_Mutation p.R348C 0.15 tolerated(0.09) benign(0.013) TCGA-FW-A3R5-06 19 44500820 44500820 C T ZNF155 Missense_Mutation p.H282Y 0.29 tolerated(0.64) probably_damaging(0.938) TCGA-FW-A3R5-06 19 44514663 44514663 C T ZNF230 Missense_Mutation p.P158S 0.30 tolerated(0.3) benign(0.009) TCGA-FW-A3R5-06 19 4453501 4453501 G A UBXN6 Missense_Mutation p.A89V 0.12 deleterious(0.04) benign(0.049) TCGA-FW-A3R5-06 19 44590866 44590866 C T ZNF284 Missense_Mutation p.S412L 0.29 deleterious(0.03) benign(0.41) TCGA-FW-A3R5-06 19 44611651 44611651 C T ZNF224 Silent p.H446H 0.12 TCGA-FW-A3R5-06 19 44619862 44619862 C T ZNF225 Intron 0.29 TCGA-FW-A3R5-06 19 44619882 44619882 C T ZNF225 Intron 0.22 TCGA-FW-A3R5-06 19 44676255 44676255 C T ZNF226 Silent p.F10F 0.24 TCGA-FW-A3R5-06 19 44777202 44777202 G A ZNF233 Missense_Mutation p.R130K 0.19 tolerated(0.67) benign(0) TCGA-FW-A3R5-06 19 44791515 44791515 G A ZNF235 Silent p.G691G 0.20 TCGA-FW-A3R5-06 19 44833552 44833552 G A ZNF112 Missense_Mutation p.P259L 0.25 tolerated(0.21) benign(0.004) TCGA-FW-A3R5-06 19 44890982 44890982 C T ZNF285 Silent p.Q475Q 0.11 TCGA-FW-A3R5-06 19 44933284 44933284 C T ZNF229 Missense_Mutation p.D558N 0.29 tolerated(1) benign(0.098) TCGA-FW-A3R5-06 19 44933292 44933292 C T ZNF229 Missense_Mutation p.R555Q 0.11 tolerated(0.49) benign(0.317) TCGA-FW-A3R5-06 19 44933552 44933552 C T ZNF229 Silent p.K468K 0.24 TCGA-FW-A3R5-06 19 44933907 44933907 C T ZNF229 Missense_Mutation p.R350K 0.09 tolerated(0.78) benign(0.003) TCGA-FW-A3R5-06 19 44934018 44934018 C T ZNF229 Missense_Mutation p.R313K 0.16 tolerated(0.22) benign(0.058) TCGA-FW-A3R5-06 19 45015121 45015121 G A CEACAM20 RNA 0.27 TCGA-FW-A3R5-06 19 45024569 45024569 G A CEACAM20 RNA 0.29 TCGA-FW-A3R5-06 19 45028281 45028281 G A CEACAM20 RNA 0.16 TCGA-FW-A3R5-06 19 45028282 45028282 G A CEACAM20 RNA 0.16 TCGA-FW-A3R5-06 19 4511239 4511239 C T PLIN4 Silent p.G897G 0.25 TCGA-FW-A3R5-06 19 4513602 4513602 C T PLIN4 Missense_Mutation p.G110S 0.31 tolerated(0.2) probably_damaging(0.923) TCGA-FW-A3R5-06 19 4513637 4513637 C T PLIN4 Missense_Mutation p.S98N 0.25 tolerated(0.82) benign(0.013) TCGA-FW-A3R5-06 19 45209064 45209064 G A CEACAM16 Missense_Mutation p.G289E 0.35 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 19 45211365 45211365 G A CEACAM16 Silent p.Q391Q 0.43 TCGA-FW-A3R5-06 19 4525644 4525644 C T PLIN5 Splice_Site p.X240_splice 0.21 TCGA-FW-A3R5-06 19 4525711 4525711 C T PLIN5 Silent p.G218G 0.33 TCGA-FW-A3R5-06 19 45281205 45281205 C T CBLC Missense_Mutation p.A6V 0.38 tolerated_low_confidence(0.05) benign(0.025) TCGA-FW-A3R5-06 19 45281206 45281206 C T CBLC Silent p.A6A 0.38 TCGA-FW-A3R5-06 19 45281402 45281402 G A CBLC Missense_Mutation p.G72S 0.57 tolerated(0.51) benign(0.041) TCGA-FW-A3R5-06 19 45284519 45284519 G A CBLC Missense_Mutation p.E186K 0.29 tolerated(0.26) benign(0.168) TCGA-FW-A3R5-06 19 45284584 45284584 C T CBLC Silent p.S207S 0.29 TCGA-FW-A3R5-06 19 4529076 4529076 C T PLIN5 Intron 0.21 TCGA-FW-A3R5-06 19 45297465 45297465 C T CBLC Missense_Mutation p.P430L 0.16 tolerated(0.06) benign(0.018) TCGA-FW-A3R5-06 19 45322051 45322051 C T BCAM Silent p.F416F 0.36 TCGA-FW-A3R5-06 19 45322706 45322706 A G BCAM Missense_Mutation p.N526S 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 45323007 45323007 G A BCAM Intron 0.44 TCGA-FW-A3R5-06 19 4534035 4534035 C T PLIN5 Missense_Mutation p.D18N 0.36 tolerated(0.08) benign(0.004) TCGA-FW-A3R5-06 19 45375207 45375207 C T PVRL2 Silent p.A192A 0.32 TCGA-FW-A3R5-06 19 45381913 45381913 C T PVRL2 Intron 0.22 TCGA-FW-A3R5-06 19 4538598 4538598 G A LRG1 Missense_Mutation p.P133L 0.34 tolerated(0.06) benign(0.058) TCGA-FW-A3R5-06 19 4538663 4538663 G A LRG1 Silent p.F111F 0.23 TCGA-FW-A3R5-06 19 45406429 45406429 C T TOMM40 3'UTR 0.33 TCGA-FW-A3R5-06 19 4544371 4544371 C T SEMA6B Missense_Mutation p.E637K 0.40 deleterious(0) benign(0.055) TCGA-FW-A3R5-06 19 4544408 4544408 G A SEMA6B Silent p.L624L 0.31 TCGA-FW-A3R5-06 19 45448094 45448094 G A APOC4 Silent p.K55K 0.60 TCGA-FW-A3R5-06 19 45537767 45537767 C T RELB Silent p.F445F 0.29 TCGA-FW-A3R5-06 19 45540982 45540982 C T RELB Silent p.F558F 0.11 TCGA-FW-A3R5-06 19 4554475 4554475 G A SEMA6B Silent p.V232V 0.26 TCGA-FW-A3R5-06 19 45563679 45563679 C T CLASRP Missense_Mutation p.A248V 0.25 tolerated(0.06) possibly_damaging(0.845) TCGA-FW-A3R5-06 19 45572499 45572499 C T CLASRP Missense_Mutation p.R623C 0.17 deleterious(0) unknown(0) TCGA-FW-A3R5-06 19 45593555 45593555 C T GEMIN7 Silent p.A61A 0.22 TCGA-FW-A3R5-06 19 45728116 45728116 C T EXOC3L2 Missense_Mutation p.E154K 0.32 tolerated(0.26) possibly_damaging(0.572) TCGA-FW-A3R5-06 19 45731469 45731469 C T EXOC3L2 Missense_Mutation p.G49E 0.31 tolerated(0.15) probably_damaging(0.914) TCGA-FW-A3R5-06 19 45801408 45801408 C T MARK4 Intron 0.18 TCGA-FW-A3R5-06 19 45801462 45801462 C T MARK4 Intron 0.36 TCGA-FW-A3R5-06 19 45867734 45867734 G A ERCC2 Silent p.S222S 0.17 TCGA-FW-A3R5-06 19 45895188 45895188 G A PPP1R13L Missense_Mutation p.P589S 0.38 tolerated(0.05) possibly_damaging(0.641) TCGA-FW-A3R5-06 19 46094037 46094037 C T GPR4 Silent p.%3D 0.31 TCGA-FW-A3R5-06 19 46094150 46094150 G A GPR4 Silent p.T325T 0.10 TCGA-FW-A3R5-06 19 46094342 46094342 C T GPR4 Silent p.E261E 0.12 TCGA-FW-A3R5-06 19 46094548 46094548 G A GPR4 Missense_Mutation p.P193S 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 46177384 46177384 C T GIPR Missense_Mutation p.S146F 0.26 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 19 46181175 46181175 C T GIPR Silent p.L312L 0.21 TCGA-FW-A3R5-06 19 46283440 46283440 G A DMPK 5'UTR 0.24 TCGA-FW-A3R5-06 19 46307697 46307697 G A RSPH6A Missense_Mutation p.S489L 0.29 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 19 46307838 46307838 G A RSPH6A Missense_Mutation p.P442L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 46307866 46307866 C T RSPH6A Missense_Mutation p.E433K 0.24 deleterious(0) possibly_damaging(0.782) TCGA-FW-A3R5-06 19 46308052 46308052 C T RSPH6A Missense_Mutation p.E371K 0.27 tolerated(0.26) benign(0.444) TCGA-FW-A3R5-06 19 46308272 46308272 C T RSPH6A Silent p.G297G 0.12 TCGA-FW-A3R5-06 19 46318912 46318912 G A SYMPK Missense_Mutation p.P1244L 0.22 deleterious_low_confidence(0) benign(0.206) TCGA-FW-A3R5-06 19 46328540 46328540 G A SYMPK Silent p.L793L 0.22 TCGA-FW-A3R5-06 19 46332449 46332449 G A SYMPK Silent p.I588I 0.29 TCGA-FW-A3R5-06 19 46338424 46338424 G A SYMPK Silent p.T435T 0.21 TCGA-FW-A3R5-06 19 46375450 46375450 G A FOXA3 Missense_Mutation p.G63R 0.26 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 19 46375487 46375487 G A FOXA3 Missense_Mutation p.G75E 0.22 deleterious(0.02) unknown(0) TCGA-FW-A3R5-06 19 46376127 46376127 C T FOXA3 Silent p.L288L 0.37 TCGA-FW-A3R5-06 19 46387758 46387758 G A IRF2BP1 Silent p.A425A 0.26 TCGA-FW-A3R5-06 19 46387882 46387882 G A IRF2BP1 Missense_Mutation p.S384F 0.13 deleterious(0) possibly_damaging(0.831) TCGA-FW-A3R5-06 19 46623582 46623582 G A IGFL3 3'UTR 0.30 TCGA-FW-A3R5-06 19 46627344 46627344 G A IGFL3 Missense_Mutation p.P50L 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-FW-A3R5-06 19 46663672 46663672 C T IGFL2 Missense_Mutation p.A18V 0.17 tolerated(0.6) benign(0.012) TCGA-FW-A3R5-06 19 46733686 46733686 G A IGFL1 Missense_Mutation p.E79K 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 19 46825075 46825075 C T HIF3A Missense_Mutation p.S396F 0.20 tolerated(0.18) benign(0.141) TCGA-FW-A3R5-06 19 46825081 46825081 G A HIF3A Missense_Mutation p.S398N 0.20 tolerated(0.19) possibly_damaging(0.829) TCGA-FW-A3R5-06 19 46832474 46832474 C T HIF3A Missense_Mutation p.A484V 0.29 tolerated(0.15) benign(0.032) TCGA-FW-A3R5-06 19 46832585 46832585 G A HIF3A Missense_Mutation p.R521Q 0.31 tolerated(0.05) probably_damaging(0.997) TCGA-FW-A3R5-06 19 46832728 46832728 C T HIF3A Missense_Mutation p.R569W 0.33 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-FW-A3R5-06 19 46914895 46914895 C T CCDC8 Silent p.Q391Q 0.16 TCGA-FW-A3R5-06 19 46914910 46914910 C T CCDC8 Silent p.E386E 0.08 TCGA-FW-A3R5-06 19 46915173 46915173 C T CCDC8 Missense_Mutation p.A299T 0.31 possibly_damaging(0.853) TCGA-FW-A3R5-06 19 46915457 46915457 C T CCDC8 Missense_Mutation p.G204E 0.44 probably_damaging(0.911) TCGA-FW-A3R5-06 19 46915458 46915458 C T CCDC8 Missense_Mutation p.G204R 0.43 probably_damaging(0.997) TCGA-FW-A3R5-06 19 46916019 46916019 C T CCDC8 Missense_Mutation p.V17I 0.11 benign(0.054) TCGA-FW-A3R5-06 19 46916020 46916020 C T CCDC8 Silent p.E16E 0.11 TCGA-FW-A3R5-06 19 46916050 46916050 C T CCDC8 Silent p.E6E 0.14 TCGA-FW-A3R5-06 19 46997547 46997547 C T PNMAL2 Silent p.E392E 0.13 TCGA-FW-A3R5-06 19 46997813 46997813 C T PNMAL2 Missense_Mutation p.E304K 0.10 deleterious(0) possibly_damaging(0.848) TCGA-FW-A3R5-06 19 47124807 47124807 C T PTGIR Silent p.K297K 0.08 TCGA-FW-A3R5-06 19 47124812 47124812 G A PTGIR Missense_Mutation p.R296C 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 47127184 47127184 G A PTGIR Missense_Mutation p.T100I 0.27 deleterious(0.02) possibly_damaging(0.823) TCGA-FW-A3R5-06 19 47151580 47151580 G A DACT3 3'UTR 0.35 TCGA-FW-A3R5-06 19 47151632 47151632 G A DACT3 3'UTR 0.32 TCGA-FW-A3R5-06 19 47151774 47151774 G A DACT3 Missense_Mutation p.R619C 0.27 deleterious(0) possibly_damaging(0.835) TCGA-FW-A3R5-06 19 47200991 47200991 A G PRKD2 Missense_Mutation p.L413P 0.28 deleterious(0.01) benign(0.018) TCGA-FW-A3R5-06 19 47225277 47225277 G A STRN4 Silent p.A693A 0.32 TCGA-FW-A3R5-06 19 47228830 47228830 G A STRN4 Missense_Mutation p.R449C 0.21 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 47228866 47228866 G A STRN4 Missense_Mutation p.P437S 0.25 deleterious(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 19 47423267 47423267 C T ARHGAP35 Silent p.F445F 0.08 TCGA-FW-A3R5-06 19 474630 474630 G A ODF3L2 Silent p.L40L 0.28 TCGA-FW-A3R5-06 19 47725025 47725025 G A BBC3 Missense_Mutation p.S240L 0.36 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 19 47858339 47858339 C T DHX34 Missense_Mutation p.T250I 0.14 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 47941126 47941126 C T SLC8A2 Missense_Mutation p.E664K 0.33 tolerated(0.33) benign(0.106) TCGA-FW-A3R5-06 19 47941136 47941136 C T SLC8A2 Silent p.E660E 0.26 TCGA-FW-A3R5-06 19 47944643 47944643 A T SLC8A2 Missense_Mutation p.N606K 0.35 tolerated(0.19) possibly_damaging(0.877) TCGA-FW-A3R5-06 19 47969464 47969464 C T SLC8A2 Missense_Mutation p.G66D 0.23 deleterious(0) possibly_damaging(0.892) TCGA-FW-A3R5-06 19 47969584 47969584 G A SLC8A2 Missense_Mutation p.P26L 0.50 tolerated(0.23) benign(0.017) TCGA-FW-A3R5-06 19 47986450 47986450 G A KPTN Silent p.L139L 0.32 TCGA-FW-A3R5-06 19 47987449 47987449 C T KPTN 5'UTR 0.32 TCGA-FW-A3R5-06 19 4817311 4817311 G A TICAM1 Missense_Mutation p.P360L 0.22 tolerated(0.23) benign(0) TCGA-FW-A3R5-06 19 4817564 4817564 G A TICAM1 Missense_Mutation p.P276S 0.35 tolerated(0.28) benign(0.11) TCGA-FW-A3R5-06 19 48220020 48220020 G A EHD2 Missense_Mutation p.E51K 0.28 tolerated(0.1) benign(0.046) TCGA-FW-A3R5-06 19 48220034 48220034 C T EHD2 Silent p.F55F 0.34 TCGA-FW-A3R5-06 19 48239742 48239742 G A EHD2 Silent p.L344L 0.38 TCGA-FW-A3R5-06 19 48284381 48284381 C T SEPW1 Missense_Mutation p.P42L 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 48305051 48305051 C T TPRX1 Missense_Mutation p.R406K 0.08 tolerated_low_confidence(0.64) benign(0.14) TCGA-FW-A3R5-06 19 48343035 48343035 C T CRX Silent p.L237L 0.08 TCGA-FW-A3R5-06 19 48374717 48374717 C T SULT2A1 Missense_Mutation p.E285K 0.21 tolerated(0.08) benign(0.121) TCGA-FW-A3R5-06 19 4839365 4839365 G A PLIN3 Silent p.L382L 0.18 TCGA-FW-A3R5-06 19 4847814 4847814 G A PLIN3 Silent p.S241S 0.24 TCGA-FW-A3R5-06 19 48519169 48519169 C T ELSPBP1 Silent p.F76F 0.27 TCGA-FW-A3R5-06 19 48551516 48551516 G A PLA2G4C 3'UTR 0.25 TCGA-FW-A3R5-06 19 48551522 48551522 G A PLA2G4C 3'UTR 0.16 TCGA-FW-A3R5-06 19 48565282 48565282 G A PLA2G4C Silent p.F420F 0.32 TCGA-FW-A3R5-06 19 48565299 48565299 G A PLA2G4C Missense_Mutation p.H415Y 0.23 tolerated(0.15) benign(0.196) TCGA-FW-A3R5-06 19 48654501 48654501 G A LIG1 Silent p.L188L 0.20 TCGA-FW-A3R5-06 19 48654502 48654502 G A LIG1 Silent p.P187P 0.20 TCGA-FW-A3R5-06 19 48800332 48800332 C T CCDC114 Silent p.S638S 0.07 TCGA-FW-A3R5-06 19 48800553 48800555 GGC AA CCDC114 Frame_Shift_Del p.G564Vfs*23 0.35 TCGA-FW-A3R5-06 19 48800737 48800737 C T CCDC114 Silent p.K503K 0.17 TCGA-FW-A3R5-06 19 48908153 48908153 G T GRIN2D Missense_Mutation p.G210C 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 19 48953984 48953984 C T GRWD1 Silent p.G248G 0.32 TCGA-FW-A3R5-06 19 48956279 48956279 C A GRWD1 Silent p.V446V 0.21 TCGA-FW-A3R5-06 19 4896717 4896717 C T ARRDC5 Missense_Mutation p.G156E 0.34 deleterious(0) possibly_damaging(0.546) TCGA-FW-A3R5-06 19 48967571 48967571 C T KCNJ14 Missense_Mutation p.P283L 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 48968103 48968103 C T KCNJ14 3'UTR 0.24 TCGA-FW-A3R5-06 19 49000670 49000670 C T LMTK3 Missense_Mutation p.G1248E 0.29 unknown(0) TCGA-FW-A3R5-06 19 49001477 49001477 C T LMTK3 Missense_Mutation p.G979E 0.27 unknown(0) TCGA-FW-A3R5-06 19 49001503 49001503 C T LMTK3 Silent p.E970E 0.07 TCGA-FW-A3R5-06 19 49001530 49001530 C T LMTK3 Silent p.G961G 0.32 TCGA-FW-A3R5-06 19 49055564 49055564 G A SULT2B1 Missense_Mutation p.D19N 0.20 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 19 49107064 49107064 G A FAM83E Missense_Mutation p.S288F 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 49119388 49119388 G A RPL18 Silent p.F123F 0.26 TCGA-FW-A3R5-06 19 49120585 49120585 G A RPL18 Silent p.S62S 0.24 TCGA-FW-A3R5-06 19 49167855 49167855 G A NTN5 Silent p.F267F 0.17 TCGA-FW-A3R5-06 19 49183689 49183689 C T RN7SL345P 5'Flank 0.26 TCGA-FW-A3R5-06 19 49183691 49183691 G A RN7SL345P 5'Flank 0.34 TCGA-FW-A3R5-06 19 49206576 49206576 G A FUT2 Silent p.R121R 0.34 TCGA-FW-A3R5-06 19 49227976 49227976 C T RASIP1 Missense_Mutation p.R790Q 0.22 deleterious(0) possibly_damaging(0.598) TCGA-FW-A3R5-06 19 49244174 49244174 C T IZUMO1 Silent p.R348R 0.35 TCGA-FW-A3R5-06 19 49248976 49248976 C T IZUMO1 Silent p.A47A 0.30 TCGA-FW-A3R5-06 19 49261309 49261309 G A FGF21 Silent p.R154R 0.38 TCGA-FW-A3R5-06 19 49261325 49261325 G A FGF21 Missense_Mutation p.G160R 0.18 tolerated(0.06) benign(0.007) TCGA-FW-A3R5-06 19 49357515 49357515 G A PLEKHA4 Missense_Mutation p.P352S 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 19 49362255 49362255 G A PLEKHA4 Silent p.V278V 0.24 TCGA-FW-A3R5-06 19 49378993 49378993 C T PPP1R15A Silent p.I596I 0.29 TCGA-FW-A3R5-06 19 49391246 49391246 G A TULP2 Silent p.P303P 0.20 TCGA-FW-A3R5-06 19 49438278 49438278 G A DHDH Missense_Mutation p.D38N 0.27 tolerated(0.25) possibly_damaging(0.685) TCGA-FW-A3R5-06 19 49442727 49442727 C T DHDH Missense_Mutation p.P130S 0.37 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 49490508 49490508 G A GYS1 Silent p.D145D 0.33 TCGA-FW-A3R5-06 19 49536481 49536481 G A CGB2 3'UTR 0.12 TCGA-FW-A3R5-06 19 49552009 49552009 C T CGB8 5'UTR 0.28 TCGA-FW-A3R5-06 19 49573279 49573279 C T KCNA7 3'UTR 0.11 TCGA-FW-A3R5-06 19 49633259 49633259 C T PPFIA3 Missense_Mutation p.L198F 0.10 deleterious(0.02) benign(0.08) TCGA-FW-A3R5-06 19 49639110 49639110 C T PPFIA3 Missense_Mutation p.P532L 0.32 tolerated(0.13) benign(0.116) TCGA-FW-A3R5-06 19 49656793 49656793 C T HRC Missense_Mutation p.E568K 0.39 tolerated(0.1) possibly_damaging(0.651) TCGA-FW-A3R5-06 19 49657924 49657924 C T HRC Missense_Mutation p.E191K 0.34 tolerated(0.31) possibly_damaging(0.636) TCGA-FW-A3R5-06 19 49674630 49674630 C T TRPM4 Silent p.I271I 0.20 TCGA-FW-A3R5-06 19 49685891 49685891 C T TRPM4 Silent p.F440F 0.09 TCGA-FW-A3R5-06 19 49686399 49686399 C T TRPM4 Missense_Mutation p.P558L 0.30 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 19 49691895 49691895 C T TRPM4 Intron 0.23 TCGA-FW-A3R5-06 19 49918253 49918253 G A CCDC155 Silent p.T458T 0.33 TCGA-FW-A3R5-06 19 49939943 49939943 G A SLC17A7 Missense_Mutation p.P60S 0.29 tolerated(0.58) benign(0.338) TCGA-FW-A3R5-06 19 49993505 49993505 C T RPL13A Silent p.V35V 0.29 TCGA-FW-A3R5-06 19 50017667 50017667 C T FCGRT Silent p.L175L 0.19 TCGA-FW-A3R5-06 19 50027802 50027802 C T FCGRT Missense_Mutation p.P214S 0.23 tolerated(0.31) benign(0.038) TCGA-FW-A3R5-06 19 50099865 50099865 C T PRR12 Missense_Mutation p.A758V 0.32 possibly_damaging(0.682) TCGA-FW-A3R5-06 19 50103168 50103168 C T PRR12 Missense_Mutation p.P1440S 0.15 possibly_damaging(0.803) TCGA-FW-A3R5-06 19 50154532 50154532 C T SCAF1 Missense_Mutation p.R296C 0.36 unknown(0) TCGA-FW-A3R5-06 19 50170331 50170331 C T BCL2L12 Missense_Mutation p.P139S 0.28 tolerated_low_confidence(0.07) probably_damaging(0.947) TCGA-FW-A3R5-06 19 50188094 50188094 C T PRMT1 Silent p.I213I 0.32 TCGA-FW-A3R5-06 19 50195622 50195622 C T CPT1C Missense_Mutation p.S38F 0.34 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 50204093 50204093 C T CPT1C Missense_Mutation p.S145F 0.27 tolerated(0.7) benign(0.188) TCGA-FW-A3R5-06 19 50208317 50208317 C T CPT1C Silent p.A275A 0.36 TCGA-FW-A3R5-06 19 50208333 50208333 C T CPT1C Silent p.L281L 0.22 TCGA-FW-A3R5-06 19 50209536 50209536 G A CPT1C Silent p.E403E 0.16 TCGA-FW-A3R5-06 19 50213610 50213610 G A CPT1C Missense_Mutation p.A534T 0.08 deleterious(0.02) probably_damaging(0.938) TCGA-FW-A3R5-06 19 50213657 50213657 C T CPT1C Silent p.S549S 0.16 TCGA-FW-A3R5-06 19 50216681 50216681 C T CPT1C Missense_Mutation p.S744F 0.22 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 19 50249785 50249785 C T TSKS Missense_Mutation p.G312S 0.22 tolerated(0.6) benign(0.058) TCGA-FW-A3R5-06 19 50249977 50249977 C T TSKS Missense_Mutation p.E248K 0.29 tolerated_low_confidence(0.26) unknown(0) TCGA-FW-A3R5-06 19 50265441 50265441 G A TSKS Silent p.L73L 0.19 TCGA-FW-A3R5-06 19 50266392 50266392 C T TSKS Missense_Mutation p.R38K 0.30 tolerated(0.49) benign(0.001) TCGA-FW-A3R5-06 19 50266481 50266481 C T TSKS Silent p.T8T 0.34 TCGA-FW-A3R5-06 19 50321567 50321567 C T MED25 5'UTR 0.40 TCGA-FW-A3R5-06 19 50370385 50370385 G A PNKP Missense_Mutation p.S26L 0.20 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 19 50383659 50383659 G A TBC1D17 Missense_Mutation p.G107S 0.33 tolerated(0.26) benign(0.088) TCGA-FW-A3R5-06 19 50383660 50383660 G A TBC1D17 Splice_Site p.X107_splice 0.34 TCGA-FW-A3R5-06 19 50391759 50391759 C T TBC1D17 Missense_Mutation p.P609S 0.20 tolerated(0.21) probably_damaging(0.968) TCGA-FW-A3R5-06 19 50398423 50398423 C T IL4I1 Silent p.E111E 0.25 TCGA-FW-A3R5-06 19 50455584 50455584 G A SIGLEC11 Silent p.L573L 0.21 TCGA-FW-A3R5-06 19 50461685 50461685 G A SIGLEC11 Silent p.S502S 0.17 TCGA-FW-A3R5-06 19 50474954 50474954 C T SIGLEC16 RNA 0.23 TCGA-FW-A3R5-06 19 50504104 50504104 G A VRK3 Silent p.P185P 0.19 TCGA-FW-A3R5-06 19 50511003 50511003 G A VRK3 Nonsense_Mutation p.Q124* 0.23 TCGA-FW-A3R5-06 19 50655865 50655865 C T IZUMO2 3'UTR 0.31 TCGA-FW-A3R5-06 19 50713817 50713817 C T MYH14 Silent p.F65F 0.31 TCGA-FW-A3R5-06 19 50735323 50735323 C T MYH14 Silent p.I370I 0.35 TCGA-FW-A3R5-06 19 50752301 50752301 C T MYH14 Silent p.L463L 0.23 TCGA-FW-A3R5-06 19 50764888 50764888 C T MYH14 Missense_Mutation p.R861C 0.46 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 50781389 50781389 C T MYH14 Missense_Mutation p.S1292F 0.14 deleterious(0.03) possibly_damaging(0.601) TCGA-FW-A3R5-06 19 50781399 50781399 G A MYH14 Silent p.R1295R 0.20 TCGA-FW-A3R5-06 19 50794294 50794294 C T MYH14 Missense_Mutation p.R1706C 0.44 deleterious(0) probably_damaging(0.91) TCGA-FW-A3R5-06 19 50813007 50813007 C T MYH14 Missense_Mutation p.S2024F 0.45 tolerated(0.06) unknown(0) TCGA-FW-A3R5-06 19 50813008 50813008 C T MYH14 Silent p.S2024S 0.45 TCGA-FW-A3R5-06 19 50823956 50823956 T C KCNC3 Silent p.E688E 0.25 TCGA-FW-A3R5-06 19 50826512 50826512 G A KCNC3 Silent p.P566P 0.38 TCGA-FW-A3R5-06 19 50826513 50826513 G A KCNC3 Missense_Mutation p.P566L 0.36 deleterious(0) possibly_damaging(0.715) TCGA-FW-A3R5-06 19 50827018 50827018 G A KCNC3 Missense_Mutation p.L398F 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 19 50881015 50881015 C T NR1H2 Silent p.A23A 0.29 TCGA-FW-A3R5-06 19 50906815 50906815 C T POLD1 Silent p.F401F 0.31 TCGA-FW-A3R5-06 19 50909687 50909687 C T POLD1 Silent p.L469L 0.50 TCGA-FW-A3R5-06 19 50926223 50926223 G A SPIB Missense_Mutation p.E90K 0.25 tolerated(0.14) benign(0.026) TCGA-FW-A3R5-06 19 50949255 50949255 C T MYBPC2 Missense_Mutation p.R418C 0.19 tolerated(0.16) possibly_damaging(0.893) TCGA-FW-A3R5-06 19 50962182 50962182 C T MYBPC2 Silent p.P838P 0.14 TCGA-FW-A3R5-06 19 51017832 51017832 C T ASPDH 5'Flank 0.19 TCGA-FW-A3R5-06 19 51020884 51020884 C T LRRC4B Missense_Mutation p.E696K 0.26 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-FW-A3R5-06 19 51133251 51133251 C T SYT3 Silent p.R284R 0.23 TCGA-FW-A3R5-06 19 51165482 51165482 G A SHANK1 Missense_Mutation p.L2076F 0.12 unknown(0) TCGA-FW-A3R5-06 19 51189562 51189562 C T SHANK1 Missense_Mutation p.E837K 0.32 benign(0.02) TCGA-FW-A3R5-06 19 51192483 51192483 C T SHANK1 Missense_Mutation p.G673E 0.10 benign(0.359) TCGA-FW-A3R5-06 19 51201152 51201152 G A SHANK1 Silent p.F603F 0.35 TCGA-FW-A3R5-06 19 51215210 51215210 G A SHANK1 Silent p.I318I 0.26 TCGA-FW-A3R5-06 19 51217155 51217155 C T SHANK1 Missense_Mutation p.R231Q 0.30 possibly_damaging(0.833) TCGA-FW-A3R5-06 19 51220090 51220090 G A SHANK1 Silent p.S29S 0.62 TCGA-FW-A3R5-06 19 51322476 51322476 C T KLK1 Missense_Mutation p.E255K 0.15 tolerated(1) benign(0) TCGA-FW-A3R5-06 19 51330299 51330299 C T KLK15 Missense_Mutation p.D106N 0.26 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 19 51330320 51330320 C T KLK15 Missense_Mutation p.E99K 0.22 tolerated(0.13) benign(0.06) TCGA-FW-A3R5-06 19 51330994 51330994 C T KLK15 Missense_Mutation p.E41K 0.35 tolerated(0.06) benign(0.115) TCGA-FW-A3R5-06 19 51361366 51361366 C T KLK3 Silent p.F96F 0.31 TCGA-FW-A3R5-06 19 51362990 51362990 C T KLK3 Intron 0.58 TCGA-FW-A3R5-06 19 51363417 51363417 G A KLK3 3'UTR 0.22 TCGA-FW-A3R5-06 19 51363451 51363451 C T KLK3 3'UTR 0.13 TCGA-FW-A3R5-06 19 51378008 51378008 G A KLK2 Silent p.V26V 0.18 TCGA-FW-A3R5-06 19 51379750 51379750 C T KLK2 Missense_Mutation p.R77W 0.28 tolerated(0.06) benign(0.168) TCGA-FW-A3R5-06 19 51380010 51380010 G A KLK2 Silent p.E163E 0.23 TCGA-FW-A3R5-06 19 51380289 51380289 C T KLK2 Intron 0.22 TCGA-FW-A3R5-06 19 51410070 51410070 G A KLK4 3'UTR 0.38 TCGA-FW-A3R5-06 19 51446816 51446816 G A KLK5 3'UTR 0.24 TCGA-FW-A3R5-06 19 51446881 51446881 G A KLK5 3'UTR 0.26 TCGA-FW-A3R5-06 19 51446957 51446957 C T KLK5 Missense_Mutation p.R271K 0.18 tolerated(0.7) benign(0.026) TCGA-FW-A3R5-06 19 51452325 51452325 C T KLK5 Missense_Mutation p.E128K 0.26 deleterious(0.01) possibly_damaging(0.568) TCGA-FW-A3R5-06 19 51483734 51483734 G A KLK7 Silent p.T77T 0.13 TCGA-FW-A3R5-06 19 51503798 51503798 C T KLK8 Missense_Mutation p.E83K 0.26 deleterious(0) probably_damaging(0.917) TCGA-FW-A3R5-06 19 51506300 51506300 G A KLK9 3'UTR 0.19 TCGA-FW-A3R5-06 19 51507037 51507037 G A KLK9 Missense_Mutation p.H176Y 0.40 deleterious(0) possibly_damaging(0.583) TCGA-FW-A3R5-06 19 51517927 51517927 G A KLK10 3'UTR 0.25 TCGA-FW-A3R5-06 19 51517952 51517952 G A KLK10 3'UTR 0.36 TCGA-FW-A3R5-06 19 51517974 51517974 G A KLK10 3'UTR 0.29 TCGA-FW-A3R5-06 19 51534092 51534092 C T KLK12 Silent p.T181T 0.32 TCGA-FW-A3R5-06 19 51535204 51535204 G - KLK12 Frame_Shift_Del p.L129Cfs*? 0.19 TCGA-FW-A3R5-06 19 51535261 51535261 G A KLK12 Missense_Mutation p.R110W 0.31 deleterious(0.02) benign(0.287) TCGA-FW-A3R5-06 19 51563821 51563821 G A KLK13 Silent p.L36L 0.37 TCGA-FW-A3R5-06 19 51629059 51629059 C T SIGLEC9 Silent p.T209T 0.08 TCGA-FW-A3R5-06 19 51647772 51647772 G A SIGLEC7 Missense_Mutation p.M181I 0.21 tolerated(1) benign(0.013) TCGA-FW-A3R5-06 19 51647777 51647777 C T SIGLEC7 Missense_Mutation p.S183F 0.27 deleterious(0.02) benign(0.273) TCGA-FW-A3R5-06 19 51647813 51647813 C T SIGLEC7 Missense_Mutation p.S195F 0.33 deleterious(0.02) possibly_damaging(0.697) TCGA-FW-A3R5-06 19 51649346 51649346 C T SIGLEC7 Missense_Mutation p.S332F 0.28 tolerated(0.07) probably_damaging(0.911) TCGA-FW-A3R5-06 19 51728689 51728689 G A CD33 Missense_Mutation p.E85K 0.20 tolerated(0.07) possibly_damaging(0.812) TCGA-FW-A3R5-06 19 51729087 51729087 C T CD33 Silent p.I149I 0.33 TCGA-FW-A3R5-06 19 51729288 51729288 C T CD33 Silent p.F216F 0.31 TCGA-FW-A3R5-06 19 51742772 51742772 G A CD33 Splice_Site p.X309_splice 0.31 TCGA-FW-A3R5-06 19 51768752 51768752 G A SIGLECL1 Missense_Mutation p.M51I 0.37 tolerated(0.15) benign(0.013) TCGA-FW-A3R5-06 19 51770657 51770657 G A SIGLECL1 Silent p.K147K 0.32 TCGA-FW-A3R5-06 19 51771905 51771905 G A SIGLECL1 3'UTR 0.31 TCGA-FW-A3R5-06 19 51874915 51874915 G A NKG7 3'UTR 0.33 TCGA-FW-A3R5-06 19 51875290 51875290 C T NKG7 Missense_Mutation p.E115K 0.31 tolerated(0.06) probably_damaging(0.989) TCGA-FW-A3R5-06 19 51875645 51875645 C T NKG7 Missense_Mutation p.D49N 0.23 tolerated(0.31) benign(0.324) TCGA-FW-A3R5-06 19 51890686 51890686 G A LIM2 Silent p.F4F 0.28 TCGA-FW-A3R5-06 19 51914542 51914542 C T SIGLEC10 Silent p.K635K 0.28 TCGA-FW-A3R5-06 19 51914613 51914613 T G SIGLEC10 Missense_Mutation p.N612H 0.28 deleterious(0.02) possibly_damaging(0.615) TCGA-FW-A3R5-06 19 51920657 51920657 C T SIGLEC10 Missense_Mutation p.G34S 0.24 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 19 51920858 51920858 C T SIGLEC10 5'UTR 0.26 TCGA-FW-A3R5-06 19 51955839 51955839 G A SIGLEC8 Missense_Mutation p.P432S 0.34 tolerated(0.21) benign(0.444) TCGA-FW-A3R5-06 19 51955846 51955846 C T SIGLEC8 Silent p.K429K 0.14 TCGA-FW-A3R5-06 19 51957470 51957470 C T SIGLEC8 Intron 0.09 TCGA-FW-A3R5-06 19 51957554 51957554 C T SIGLEC8 Silent p.R388R 0.28 TCGA-FW-A3R5-06 19 51960931 51960931 G A SIGLEC8 Silent p.L173L 0.23 TCGA-FW-A3R5-06 19 51960961 51960961 C T SIGLEC8 Missense_Mutation p.G163R 0.27 deleterious(0.03) benign(0.175) TCGA-FW-A3R5-06 19 51961699 51961699 C T SIGLEC8 5'UTR 0.47 TCGA-FW-A3R5-06 19 51981872 51981872 C T CEACAM18 Silent p.L53L 0.15 TCGA-FW-A3R5-06 19 51986446 51986446 C T CEACAM18 Silent p.L344L 0.25 TCGA-FW-A3R5-06 19 52000608 52000608 G A SIGLEC12 Silent p.F499F 0.33 TCGA-FW-A3R5-06 19 52000654 52000654 C T SIGLEC12 Missense_Mutation p.G484E 0.26 tolerated(0.07) benign(0.395) TCGA-FW-A3R5-06 19 52004702 52004702 G A SIGLEC12 Missense_Mutation p.L96F 0.20 tolerated(0.06) possibly_damaging(0.747) TCGA-FW-A3R5-06 19 52004741 52004741 G A SIGLEC12 Nonsense_Mutation p.R83* 0.26 TCGA-FW-A3R5-06 19 52023386 52023386 C T SIGLEC6 Missense_Mutation p.E438K 0.29 tolerated(0.41) benign(0.002) TCGA-FW-A3R5-06 19 52031002 52031002 C T SIGLEC6 Missense_Mutation p.R396K 0.19 tolerated(0.64) benign(0.057) TCGA-FW-A3R5-06 19 52034098 52034098 G A SIGLEC6 Silent p.S181S 0.24 TCGA-FW-A3R5-06 19 52034117 52034117 C T SIGLEC6 Missense_Mutation p.G175E 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 19 52034562 52034562 G A SIGLEC6 Silent p.F93F 0.23 TCGA-FW-A3R5-06 19 52034580 52034580 C T SIGLEC6 Silent p.E87E 0.28 TCGA-FW-A3R5-06 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.25 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 19 52091439 52091439 A G ZNF175 Missense_Mutation p.K619E 0.31 tolerated(1) benign(0.138) TCGA-FW-A3R5-06 19 52129363 52129363 C T SIGLEC5 Silent p.V462V 0.10 TCGA-FW-A3R5-06 19 52131148 52131148 G A SIGLEC5 Silent p.F312F 0.34 TCGA-FW-A3R5-06 19 52131192 52131192 T A SIGLEC5 Missense_Mutation p.I298F 0.26 deleterious(0.03) probably_damaging(0.944) TCGA-FW-A3R5-06 19 52131211 52131211 G A SIGLEC5 Silent p.T291T 0.29 TCGA-FW-A3R5-06 19 52146630 52146630 C T SIGLEC14 Missense_Mutation p.S390N 0.09 tolerated(0.36) benign(0.01) TCGA-FW-A3R5-06 19 5221023 5221023 G A PTPRS Missense_Mutation p.P1148L 0.27 tolerated(0.09) benign(0.005) TCGA-FW-A3R5-06 19 52220383 52220383 C T HAS1 Missense_Mutation p.E256K 0.24 tolerated(0.29) benign(0.111) TCGA-FW-A3R5-06 19 52220436 52220436 G A HAS1 Missense_Mutation p.S238L 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 5222727 5222727 G A PTPRS Missense_Mutation p.R1026C 0.18 deleterious(0.02) possibly_damaging(0.634) TCGA-FW-A3R5-06 19 5222750 5222750 G A PTPRS Missense_Mutation p.P1018L 0.20 tolerated(0.47) possibly_damaging(0.828) TCGA-FW-A3R5-06 19 52249388 52249388 C T FPR1 Missense_Mutation p.S287N 0.19 tolerated(0.1) benign(0.178) TCGA-FW-A3R5-06 19 52249484 52249484 G A FPR1 Missense_Mutation p.S255F 0.28 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 52249533 52249533 G A FPR1 Missense_Mutation p.P239S 0.27 tolerated(0.08) possibly_damaging(0.859) TCGA-FW-A3R5-06 19 52249706 52249706 G A FPR1 Missense_Mutation p.S181L 0.28 tolerated(0.26) benign(0.309) TCGA-FW-A3R5-06 19 52249913 52249913 C T FPR1 Missense_Mutation p.S112N 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 52249993 52249993 C T FPR1 Silent p.K85K 0.09 TCGA-FW-A3R5-06 19 52249996 52249996 C T FPR1 Silent p.R84R 0.21 TCGA-FW-A3R5-06 19 52250002 52250002 C T FPR1 Missense_Mutation p.M82I 0.14 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 52250020 52250020 G A FPR1 Silent p.S76S 0.35 TCGA-FW-A3R5-06 19 52272026 52272026 C T FPR2 Missense_Mutation p.L39F 0.22 tolerated(0.07) benign(0.102) TCGA-FW-A3R5-06 19 52272052 52272052 G A FPR2 Silent p.V47V 0.23 TCGA-FW-A3R5-06 19 52272394 52272394 C T FPR2 Silent p.F161F 0.34 TCGA-FW-A3R5-06 19 52272640 52272640 C T FPR2 Silent p.L243L 0.35 TCGA-FW-A3R5-06 19 52327032 52327032 G A FPR3 Missense_Mutation p.E11K 0.34 tolerated(0.86) benign(0.005) TCGA-FW-A3R5-06 19 52327124 52327124 C T FPR3 Silent p.V41V 0.25 TCGA-FW-A3R5-06 19 52327285 52327285 C T FPR3 Missense_Mutation p.S95L 0.29 tolerated(0.13) benign(0.001) TCGA-FW-A3R5-06 19 52327383 52327383 C T FPR3 Silent p.L128L 0.31 TCGA-FW-A3R5-06 19 52327717 52327717 C T FPR3 Missense_Mutation p.P239L 0.31 deleterious(0.02) possibly_damaging(0.903) TCGA-FW-A3R5-06 19 52376092 52376092 G A ZNF577 Missense_Mutation p.S384L 0.23 tolerated(0.05) benign(0.156) TCGA-FW-A3R5-06 19 5238990 5238990 G A PTPRS Missense_Mutation p.R597C 0.23 tolerated(0.08) possibly_damaging(0.836) TCGA-FW-A3R5-06 19 52497354 52497354 G A ZNF615 Silent p.F336F 0.10 TCGA-FW-A3R5-06 19 52519592 52519592 G A ZNF614 Missense_Mutation p.T420I 0.09 tolerated(0.16) benign(0.252) TCGA-FW-A3R5-06 19 52568891 52568891 G A ZNF841 Silent p.S748S 0.41 TCGA-FW-A3R5-06 19 52569401 52569401 G A ZNF841 Silent p.F578F 0.19 TCGA-FW-A3R5-06 19 52569430 52569430 G A ZNF841 Missense_Mutation p.L569F 0.22 tolerated(0.1) benign(0) TCGA-FW-A3R5-06 19 52714601 52714601 C T PPP2R1A Missense_Mutation p.S120L 0.10 deleterious(0.01) possibly_damaging(0.537) TCGA-FW-A3R5-06 19 52825349 52825349 C T ZNF480 Silent p.T282T 0.24 TCGA-FW-A3R5-06 19 52825556 52825556 C T ZNF480 Silent p.A351A 0.29 TCGA-FW-A3R5-06 19 52869802 52869802 C T ZNF610 Missense_Mutation p.L391F 0.23 tolerated(0.14) benign(0.035) TCGA-FW-A3R5-06 19 52918892 52918892 C T ZNF528 Missense_Mutation p.H263Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 19 52941923 52941923 C T ZNF534 Missense_Mutation p.H417Y 0.33 deleterious(0) possibly_damaging(0.807) TCGA-FW-A3R5-06 19 52942106 52942106 C T ZNF534 Missense_Mutation p.P478S 0.09 deleterious(0.01) possibly_damaging(0.745) TCGA-FW-A3R5-06 19 52942138 52942138 C T ZNF534 Silent p.F488F 0.33 TCGA-FW-A3R5-06 19 52942420 52942420 G A ZNF534 Silent p.R582R 0.31 TCGA-FW-A3R5-06 19 52994586 52994586 C T ZNF578 5'UTR 0.38 TCGA-FW-A3R5-06 19 53015326 53015326 G A ZNF578 Silent p.E564E 0.27 TCGA-FW-A3R5-06 19 53058065 53058065 C T ZNF808 Silent p.F632F 0.19 TCGA-FW-A3R5-06 19 53085871 53085871 C T ZNF701 Missense_Mutation p.R253C 0.33 deleterious(0.01) possibly_damaging(0.736) TCGA-FW-A3R5-06 19 53086249 53086249 C T ZNF701 Missense_Mutation p.L379F 0.28 deleterious(0.02) possibly_damaging(0.599) TCGA-FW-A3R5-06 19 532077 532077 C T CDC34 Missense_Mutation p.P49L 0.19 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 19 532078 532078 C T CDC34 Silent p.P49P 0.19 TCGA-FW-A3R5-06 19 53269385 53269385 G A ZNF600 Missense_Mutation p.H542Y 0.28 tolerated(0.71) benign(0.125) TCGA-FW-A3R5-06 19 53269757 53269757 C T ZNF600 Missense_Mutation p.E418K 0.18 deleterious(0.02) probably_damaging(0.987) TCGA-FW-A3R5-06 19 53302120 53302120 T C ZNF28 3'UTR 0.11 TCGA-FW-A3R5-06 19 53303045 53303045 G A ZNF28 Missense_Mutation p.H685Y 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-FW-A3R5-06 19 53343425 53343425 G A ZNF468 3'UTR 0.38 TCGA-FW-A3R5-06 19 53345105 53345105 G A ZNF468 Silent p.L148L 0.09 TCGA-FW-A3R5-06 19 53383729 53383742 CAGGTGTGAGACAC - ZNF320 3'UTR 0.36 TCGA-FW-A3R5-06 19 53473805 53473805 G A ZNF702P RNA 0.27 TCGA-FW-A3R5-06 19 53473988 53473988 C T CTD-2620I22.1 RNA 0.09 TCGA-FW-A3R5-06 19 53572226 53572226 G A ZNF160 Missense_Mutation p.R521C 0.10 tolerated(0.23) probably_damaging(0.954) TCGA-FW-A3R5-06 19 53619662 53619662 C T ZNF415 Missense_Mutation p.E14K 0.18 deleterious(0.03) possibly_damaging(0.81) TCGA-FW-A3R5-06 19 53625753 53625753 C T ZNF415 5'UTR 0.27 TCGA-FW-A3R5-06 19 53668167 53668167 G A ZNF665 Missense_Mutation p.H526Y 0.26 tolerated(0.3) benign(0.098) TCGA-FW-A3R5-06 19 53668977 53668977 G A ZNF665 Missense_Mutation p.H256Y 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 19 53678703 53678703 G A ZNF665 Missense_Mutation p.S46F 0.28 tolerated(0.13) possibly_damaging(0.455) TCGA-FW-A3R5-06 19 53740812 53740812 G A ZNF677 Missense_Mutation p.L390F 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 53741697 53741697 C T ZNF677 Missense_Mutation p.D95N 0.18 tolerated(0.28) probably_damaging(0.992) TCGA-FW-A3R5-06 19 53762792 53762792 C T VN1R2 Silent p.F388F 0.27 TCGA-FW-A3R5-06 19 53770252 53770252 G A VN1R4 Missense_Mutation p.P223S 0.32 tolerated(0.43) benign(0.024) TCGA-FW-A3R5-06 19 53770253 53770253 G A VN1R4 Silent p.S222S 0.33 TCGA-FW-A3R5-06 19 53770263 53770263 C T VN1R4 Missense_Mutation p.S219N 0.26 tolerated(0.7) benign(0.003) TCGA-FW-A3R5-06 19 53770916 53770916 C T VN1R4 Translation_Start_Site p.M1? 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-FW-A3R5-06 19 53792933 53792933 C T BIRC8 Missense_Mutation p.R232K 0.08 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 53793021 53793021 G A BIRC8 Missense_Mutation p.P203S 0.23 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 19 53793674 53793674 G A BIRC8 5'UTR 0.10 TCGA-FW-A3R5-06 19 53793921 53793921 C T BIRC8 5'UTR 0.36 TCGA-FW-A3R5-06 19 53854443 53854443 C T ZNF845 Missense_Mutation p.S172L 0.27 tolerated(0.15) probably_damaging(0.974) TCGA-FW-A3R5-06 19 53885197 53885197 C T ZNF525 Silent p.T455T 0.34 TCGA-FW-A3R5-06 19 53885633 53885633 C T ZNF525 3'UTR 0.13 TCGA-FW-A3R5-06 19 53886301 53886301 C T ZNF525 3'UTR 0.30 TCGA-FW-A3R5-06 19 53889549 53889549 C T ZNF525 3'Flank 0.23 TCGA-FW-A3R5-06 19 53945699 53945699 C T TPM3P9 RNA 0.27 TCGA-FW-A3R5-06 19 53958448 53958448 C T ZNF761 RNA 0.21 TCGA-FW-A3R5-06 19 53994932 53994932 C T ZNF813 Silent p.L482L 0.21 TCGA-FW-A3R5-06 19 53995822 53995822 C T ZNF813 3'UTR 0.18 TCGA-FW-A3R5-06 19 54080123 54080123 G A ZNF331 Missense_Mutation p.M103I 0.27 tolerated(0.38) benign(0.001) TCGA-FW-A3R5-06 19 54080195 54080195 G A ZNF331 Silent p.K127K 0.30 TCGA-FW-A3R5-06 19 54080819 54080819 C T ZNF331 Silent p.A335A 0.26 TCGA-FW-A3R5-06 19 54080850 54080850 G A ZNF331 Missense_Mutation p.E346K 0.29 deleterious(0.05) benign(0.404) TCGA-FW-A3R5-06 19 54081248 54081248 C T ZNF331 3'UTR 0.31 TCGA-FW-A3R5-06 19 54140039 54140039 C T DPRX Nonsense_Mutation p.R125* 0.11 TCGA-FW-A3R5-06 19 54140117 54140117 C T DPRX Missense_Mutation p.H151Y 0.32 deleterious(0.04) probably_damaging(0.972) TCGA-FW-A3R5-06 19 54172509 54172509 G A MIR512-1 3'Flank 0.28 TCGA-FW-A3R5-06 19 54177468 54177468 G A MIR498 RNA 0.26 TCGA-FW-A3R5-06 19 54203316 54203316 G A MIR518F RNA 0.18 TCGA-FW-A3R5-06 19 54234287 54234287 C T MIR518A1 RNA 0.24 TCGA-FW-A3R5-06 19 54254478 54254478 C T MIR522 RNA 0.28 TCGA-FW-A3R5-06 19 54257294 54257294 G A MIR527 RNA 0.11 TCGA-FW-A3R5-06 19 54290995 54290995 C T MIR371A RNA 0.26 TCGA-FW-A3R5-06 19 54291141 54291141 C T MIR371B Intron 0.36 TCGA-FW-A3R5-06 19 54297253 54297253 C T NLRP12 3'UTR 0.42 TCGA-FW-A3R5-06 19 54299171 54299171 C T NLRP12 Missense_Mutation p.G1014S 0.15 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 19 54313046 54313046 C T NLRP12 Missense_Mutation p.E623K 0.24 deleterious(0.01) benign(0.055) TCGA-FW-A3R5-06 19 54313098 54313098 G A NLRP12 Silent p.T605T 0.23 TCGA-FW-A3R5-06 19 54313535 54313535 C T NLRP12 Missense_Mutation p.G460R 0.32 tolerated(0.06) probably_damaging(0.955) TCGA-FW-A3R5-06 19 54313818 54313818 G A NLRP12 Silent p.F365F 0.29 TCGA-FW-A3R5-06 19 54313882 54313882 G A NLRP12 Missense_Mutation p.P344L 0.28 tolerated(0.09) probably_damaging(1) TCGA-FW-A3R5-06 19 54314000 54314000 C T NLRP12 Missense_Mutation p.D305N 0.08 tolerated(0.08) benign(0.024) TCGA-FW-A3R5-06 19 54314291 54314291 C T NLRP12 Missense_Mutation p.E208K 0.27 deleterious(0.03) probably_damaging(0.935) TCGA-FW-A3R5-06 19 54377181 54377181 C T MYADM Missense_Mutation p.S133L 0.26 tolerated(0.63) benign(0.16) TCGA-FW-A3R5-06 19 54395001 54395001 C T PRKCG Silent p.I201I 0.24 TCGA-FW-A3R5-06 19 54395847 54395847 G A PRKCG Silent p.G257G 0.19 TCGA-FW-A3R5-06 19 54403940 54403940 G A PRKCG Silent p.E504E 0.20 TCGA-FW-A3R5-06 19 54466657 54466657 C T CACNG8 Silent p.L87L 0.21 TCGA-FW-A3R5-06 19 54496101 54496101 C T CACNG6 5'UTR 0.24 TCGA-FW-A3R5-06 19 54554694 54554694 C T VSTM1 Missense_Mutation p.D122N 0.32 tolerated(0.44) benign(0.001) TCGA-FW-A3R5-06 19 5455863 5455863 G A ZNRF4 Missense_Mutation p.G121S 0.14 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 19 5455864 5455864 G T ZNRF4 Missense_Mutation p.G121V 0.15 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 5456123 5456123 C T ZNRF4 Silent p.I207I 0.31 TCGA-FW-A3R5-06 19 5456292 5456292 C T ZNRF4 Silent p.L264L 0.27 TCGA-FW-A3R5-06 19 5456549 5456549 C T ZNRF4 Silent p.P349P 0.10 TCGA-FW-A3R5-06 19 5456633 5456633 G A ZNRF4 Silent p.P377P 0.23 TCGA-FW-A3R5-06 19 5456634 5456634 G A ZNRF4 Missense_Mutation p.G378S 0.23 tolerated(0.11) benign(0.412) TCGA-FW-A3R5-06 19 54625919 54625919 C T PRPF31 Silent p.F122F 0.60 TCGA-FW-A3R5-06 19 54626875 54626875 C T PRPF31 Silent p.L155L 0.25 TCGA-FW-A3R5-06 19 54627968 54627968 C T PRPF31 Missense_Mutation p.S263L 0.42 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 19 54647985 54647985 A T CNOT3 Missense_Mutation p.T134S 0.37 deleterious(0.04) possibly_damaging(0.779) TCGA-FW-A3R5-06 19 54647986 54647986 C T CNOT3 Missense_Mutation p.T134M 0.37 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 19 54656240 54656240 C T CNOT3 Missense_Mutation p.P594L 0.13 tolerated(0.07) possibly_damaging(0.726) TCGA-FW-A3R5-06 19 54673325 54673325 G A TMC4 Missense_Mutation p.R129W 0.34 deleterious(0) possibly_damaging(0.792) TCGA-FW-A3R5-06 19 54687453 54687453 G A MBOAT7 Silent p.S148S 0.08 TCGA-FW-A3R5-06 19 54687454 54687454 G A MBOAT7 Missense_Mutation p.S148F 0.11 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 19 54722248 54722248 C T LILRB3 Silent p.R525R 0.19 TCGA-FW-A3R5-06 19 54724538 54724538 C T LILRB3 Missense_Mutation p.G373E 0.31 tolerated(0.16) benign(0.015) TCGA-FW-A3R5-06 19 54744290 54744290 C T LILRA6 Missense_Mutation p.G373E 0.07 tolerated(0.19) benign(0.026) TCGA-FW-A3R5-06 19 54746066 54746066 C T LILRA6 Missense_Mutation p.G64E 0.17 deleterious(0.05) possibly_damaging(0.864) TCGA-FW-A3R5-06 19 54746089 54746089 C T LILRA6 Silent p.Q56Q 0.15 TCGA-FW-A3R5-06 19 54759173 54759173 C T LILRB5 Missense_Mutation p.D310N 0.34 deleterious(0) possibly_damaging(0.763) TCGA-FW-A3R5-06 19 54760539 54760539 C T LILRB5 Silent p.E56E 0.34 TCGA-FW-A3R5-06 19 54780682 54780682 G A LILRB2 Nonsense_Mutation p.Q488* 0.15 TCGA-FW-A3R5-06 19 54782274 54782274 G A LILRB2 Silent p.L366L 0.26 TCGA-FW-A3R5-06 19 54782677 54782677 G A LILRB2 Silent p.I315I 0.46 TCGA-FW-A3R5-06 19 54782698 54782698 G A LILRB2 Silent p.A308A 0.49 TCGA-FW-A3R5-06 19 54782829 54782829 G A LILRB2 Missense_Mutation p.R265C 0.16 tolerated(0.1) possibly_damaging(0.735) TCGA-FW-A3R5-06 19 54783434 54783434 G A LILRB2 Missense_Mutation p.L142F 0.27 deleterious(0.03) probably_damaging(0.964) TCGA-FW-A3R5-06 19 54783815 54783815 C T LILRB2 Silent p.R62R 0.14 TCGA-FW-A3R5-06 19 54784340 54784340 G A LILRB2 Silent p.I4I 0.27 TCGA-FW-A3R5-06 19 54800011 54800011 C T LILRA3 3'UTR 0.25 TCGA-FW-A3R5-06 19 54802110 54802110 C T LILRA3 Missense_Mutation p.E360K 0.25 deleterious(0.04) possibly_damaging(0.512) TCGA-FW-A3R5-06 19 54802530 54802530 G A LILRA3 Missense_Mutation p.S304F 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 54803019 54803019 G A LILRA3 Missense_Mutation p.P220S 0.26 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 19 54803167 54803167 G A LILRA3 Silent p.S170S 0.33 TCGA-FW-A3R5-06 19 54803193 54803193 C T LILRA3 Missense_Mutation p.D162N 0.39 tolerated(0.2) benign(0.045) TCGA-FW-A3R5-06 19 54803315 54803315 G A LILRA3 Missense_Mutation p.A121V 0.14 tolerated(0.73) benign(0.002) TCGA-FW-A3R5-06 19 54818625 54818625 C T LILRA5 3'UTR 0.32 TCGA-FW-A3R5-06 19 54822693 54822693 G A LILRA5 Missense_Mutation p.P235S 0.32 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 19 54823363 54823363 C T LILRA5 Silent p.G60G 0.27 TCGA-FW-A3R5-06 19 54844923 54844923 G A LILRA4 Missense_Mutation p.P474S 0.20 tolerated(0.23) benign(0.018) TCGA-FW-A3R5-06 19 54848392 54848392 G A LILRA4 Silent p.S325S 0.25 TCGA-FW-A3R5-06 19 54848833 54848833 G A LILRA4 Missense_Mutation p.P264S 0.47 tolerated(0.37) benign(0.158) TCGA-FW-A3R5-06 19 54849490 54849490 G A LILRA4 Silent p.T124T 0.21 TCGA-FW-A3R5-06 19 54849677 54849677 C T LILRA4 Silent p.L115L 0.19 TCGA-FW-A3R5-06 19 54850411 54850411 G A LILRA4 5'UTR 0.21 TCGA-FW-A3R5-06 19 54867965 54867965 C T LAIR1 Missense_Mutation p.R209K 0.11 deleterious(0) possibly_damaging(0.745) TCGA-FW-A3R5-06 19 54872709 54872709 G A LAIR1 Silent p.L60L 0.29 TCGA-FW-A3R5-06 19 54872761 54872761 C T LAIR1 Silent p.G42G 0.27 TCGA-FW-A3R5-06 19 54872769 54872769 G A LAIR1 Missense_Mutation p.P40S 0.25 tolerated(0.1) benign(0.009) TCGA-FW-A3R5-06 19 54930377 54930377 C T TTYH1 Missense_Mutation p.R68C 0.25 tolerated(0.22) probably_damaging(0.999) TCGA-FW-A3R5-06 19 54946752 54946752 G A TTYH1 Missense_Mutation p.E386K 0.25 tolerated(0.09) probably_damaging(0.997) TCGA-FW-A3R5-06 19 54963357 54963357 C T LENG8 Silent p.A42A 0.25 TCGA-FW-A3R5-06 19 54964810 54964810 C T LENG8 Missense_Mutation p.P134L 0.21 deleterious(0.01) benign(0.189) TCGA-FW-A3R5-06 19 54965696 54965696 C T LENG8 Missense_Mutation p.P172S 0.48 tolerated(0.08) benign(0.003) TCGA-FW-A3R5-06 19 55043987 55043987 C T KIR3DX1 5'Flank 0.19 TCGA-FW-A3R5-06 19 55044017 55044017 G A KIR3DX1 Translation_Start_Site p.M1? 0.27 deleterious(0.02) possibly_damaging(0.794) TCGA-FW-A3R5-06 19 55044969 55044969 C T KIR3DX1 Missense_Mutation p.S30F 0.09 tolerated(0.28) probably_damaging(0.999) TCGA-FW-A3R5-06 19 55045040 55045040 C T KIR3DX1 Missense_Mutation p.R54W 0.30 deleterious(0.02) possibly_damaging(0.86) TCGA-FW-A3R5-06 19 55045177 55045177 G A KIR3DX1 Silent p.K99K 0.14 TCGA-FW-A3R5-06 19 55046958 55046958 G A KIR3DX1 Missense_Mutation p.G168E 0.32 tolerated(1) possibly_damaging(0.613) TCGA-FW-A3R5-06 19 55047005 55047005 C T KIR3DX1 Missense_Mutation p.P184S 0.26 tolerated(0.08) probably_damaging(0.922) TCGA-FW-A3R5-06 19 55047106 55047106 C T KIR3DX1 Silent p.I217I 0.22 TCGA-FW-A3R5-06 19 55048253 55048253 G A KIR3DX1 Missense_Mutation p.E274K 0.30 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 19 55087397 55087397 G A LILRA2 Missense_Mutation p.G359E 0.34 deleterious(0.02) possibly_damaging(0.818) TCGA-FW-A3R5-06 19 55106215 55106215 C T LILRA1 Silent p.I52I 0.26 TCGA-FW-A3R5-06 19 55106285 55106285 G A LILRA1 Missense_Mutation p.E76K 0.30 tolerated(0.29) benign(0.097) TCGA-FW-A3R5-06 19 55106693 55106693 G A LILRA1 Missense_Mutation p.E163K 0.28 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 19 55107734 55107734 C T LILRA1 Nonsense_Mutation p.Q347* 0.24 TCGA-FW-A3R5-06 19 55107744 55107744 G A LILRA1 Missense_Mutation p.G350E 0.31 tolerated(0.35) benign(0.016) TCGA-FW-A3R5-06 19 55107791 55107791 C T LILRA1 Missense_Mutation p.P366S 0.30 deleterious(0.04) possibly_damaging(0.877) TCGA-FW-A3R5-06 19 55110701 55110701 G A LILRA1 Missense_Mutation p.G421E 0.25 tolerated(0.09) benign(0.157) TCGA-FW-A3R5-06 19 55112345 55112345 G A LILRA1 3'UTR 0.17 TCGA-FW-A3R5-06 19 55142047 55142047 C T LILRB1 5'UTR 0.30 TCGA-FW-A3R5-06 19 55143034 55143034 G A LILRB1 Missense_Mutation p.G52S 0.32 tolerated(0.42) benign(0) TCGA-FW-A3R5-06 19 55143388 55143388 G A LILRB1 Missense_Mutation p.A121T 0.07 tolerated(0.38) benign(0.009) TCGA-FW-A3R5-06 19 55143679 55143679 C T LILRB1 Silent p.L218L 0.25 TCGA-FW-A3R5-06 19 55143921 55143921 C T LILRB1 Missense_Mutation p.S223F 0.31 deleterious(0) possibly_damaging(0.551) TCGA-FW-A3R5-06 19 55144467 55144467 G A LILRB1 Missense_Mutation p.G320E 0.13 deleterious(0.01) possibly_damaging(0.497) TCGA-FW-A3R5-06 19 55147840 55147840 C T AC009892.10 Intron 0.36 TCGA-FW-A3R5-06 19 55148409 55148409 C T LILRB1 3'UTR 0.40 TCGA-FW-A3R5-06 19 55174451 55174451 C T LILRB4 5'UTR 0.18 TCGA-FW-A3R5-06 19 55174518 55174518 C T LILRB4 Silent p.L11L 0.09 TCGA-FW-A3R5-06 19 55177268 55177268 C T LILRB4 Silent p.L254L 0.29 TCGA-FW-A3R5-06 19 55179107 55179107 C T LILRB4 Missense_Mutation p.P355S 0.16 deleterious(0.03) benign(0.19) TCGA-FW-A3R5-06 19 55179383 55179383 C T LILRB4 Silent p.L420L 0.19 TCGA-FW-A3R5-06 19 55179585 55179585 C T LILRB4 3'UTR 0.24 TCGA-FW-A3R5-06 19 55220936 55220936 G A AC098784.2 3'Flank 0.22 TCGA-FW-A3R5-06 19 55237775 55237775 C T KIR3DL3 Silent p.P109P 0.64 TCGA-FW-A3R5-06 19 55247704 55247704 G A KIR3DL3 3'UTR 0.33 TCGA-FW-A3R5-06 19 55253610 55253610 C T KIR2DL3 Silent p.F85F 0.50 TCGA-FW-A3R5-06 19 55263177 55263177 C T KIR2DL3 Silent p.L264L 0.51 TCGA-FW-A3R5-06 19 55281307 55281307 C T KIR2DL1 Missense_Mutation p.S2L 0.22 tolerated_low_confidence(0.1) benign(0.004) TCGA-FW-A3R5-06 19 55284800 55284800 C T KIR2DL1 Missense_Mutation p.P29L 0.10 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 19 55285069 55285069 G A KIR2DL1 Missense_Mutation p.D119N 0.27 tolerated(0.05) probably_damaging(0.981) TCGA-FW-A3R5-06 19 55294968 55294968 G A KIR2DL1 Missense_Mutation p.G283E 0.27 tolerated(1) probably_damaging(1) TCGA-FW-A3R5-06 19 55331371 55331371 C T KIR3DL1 Missense_Mutation p.L187F 0.21 tolerated(0.14) benign(0.015) TCGA-FW-A3R5-06 19 55333099 55333099 C T KIR3DL1 Silent p.S245S 0.69 TCGA-FW-A3R5-06 19 55346568 55346568 G A KIR3DL1 3'Flank 0.16 TCGA-FW-A3R5-06 19 55363469 55363469 C T KIR3DL2 Silent p.P29P 0.47 TCGA-FW-A3R5-06 19 55365417 55365417 G A KIR3DL2 Missense_Mutation p.G191R 0.69 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 55377318 55377318 C T KIR3DL2 Silent p.I353I 0.29 TCGA-FW-A3R5-06 19 55377319 55377319 C T KIR3DL2 Missense_Mutation p.L354F 0.29 tolerated(0.07) benign(0.14) TCGA-FW-A3R5-06 19 55377343 55377343 C T KIR3DL2 Missense_Mutation p.R362C 0.26 tolerated(0.06) benign(0.009) TCGA-FW-A3R5-06 19 55377838 55377838 G A KIR3DL2 Missense_Mutation p.M373I 0.26 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 19 55378071 55378071 C T KIR3DL2 Missense_Mutation p.P418L 0.08 deleterious(0) possibly_damaging(0.564) TCGA-FW-A3R5-06 19 55417934 55417934 G A NCR1 Missense_Mutation p.E42K 0.33 deleterious(0.03) benign(0.227) TCGA-FW-A3R5-06 19 55439064 55439064 G A NLRP7 Silent p.L964L 0.11 TCGA-FW-A3R5-06 19 55444962 55444962 G A NLRP7 Missense_Mutation p.P873S 0.21 deleterious(0.02) possibly_damaging(0.566) TCGA-FW-A3R5-06 19 55444993 55444993 C T NLRP7 Silent p.G862G 0.30 TCGA-FW-A3R5-06 19 55445082 55445082 C T NLRP7 Missense_Mutation p.A833T 0.19 deleterious(0.05) benign(0.314) TCGA-FW-A3R5-06 19 55449572 55449572 C T NLRP7 Missense_Mutation p.D657N 0.30 deleterious(0.04) benign(0.414) TCGA-FW-A3R5-06 19 55450836 55450836 C T NLRP7 Missense_Mutation p.G451R 0.29 tolerated(0.99) benign(0.001) TCGA-FW-A3R5-06 19 55450996 55450996 G A NLRP7 Silent p.F397F 0.32 TCGA-FW-A3R5-06 19 55451240 55451240 G A NLRP7 Missense_Mutation p.P316L 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 55451427 55451427 C T NLRP7 Missense_Mutation p.G254S 0.28 deleterious(0.02) probably_damaging(0.979) TCGA-FW-A3R5-06 19 55451765 55451765 C T NLRP7 Missense_Mutation p.G141E 0.27 tolerated(0.2) benign(0.134) TCGA-FW-A3R5-06 19 55452895 55452895 G A NLRP7 Missense_Mutation p.S62F 0.33 tolerated(0.07) possibly_damaging(0.544) TCGA-FW-A3R5-06 19 55481539 55481539 G A NLRP2 Silent p.G52G 0.21 TCGA-FW-A3R5-06 19 55493558 55493558 G A NLRP2 Silent p.L164L 0.29 TCGA-FW-A3R5-06 19 55493706 55493706 C T NLRP2 Missense_Mutation p.P214S 0.26 deleterious(0.02) probably_damaging(0.958) TCGA-FW-A3R5-06 19 55493984 55493984 G A NLRP2 Silent p.G306G 0.32 TCGA-FW-A3R5-06 19 55494093 55494093 G A NLRP2 Missense_Mutation p.D343N 0.46 deleterious(0) possibly_damaging(0.634) TCGA-FW-A3R5-06 19 55494140 55494140 C T NLRP2 Silent p.G358G 0.10 TCGA-FW-A3R5-06 19 55496418 55496418 C T NLRP2 Silent p.S678S 0.32 TCGA-FW-A3R5-06 19 55501474 55501474 C T NLRP2 Silent p.N817N 0.31 TCGA-FW-A3R5-06 19 55512153 55512153 G A NLRP2 Missense_Mutation p.E1026K 0.30 tolerated(0.27) benign(0.032) TCGA-FW-A3R5-06 19 55512363 55512363 G A NLRP2 3'UTR 0.49 TCGA-FW-A3R5-06 19 55512364 55512364 G A NLRP2 3'UTR 0.54 TCGA-FW-A3R5-06 19 55525594 55525594 C T GP6 Silent p.R573R 0.27 TCGA-FW-A3R5-06 19 55543725 55543725 G A GP6 Missense_Mutation p.S36F 0.21 deleterious_low_confidence(0.03) benign(0.331) TCGA-FW-A3R5-06 19 55610167 55610167 G A PPP1R12C Silent p.A312A 0.27 TCGA-FW-A3R5-06 19 55652271 55652271 C T TNNT1 Missense_Mutation p.E123K 0.43 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 55652277 55652277 C T TNNT1 Missense_Mutation p.E121K 0.28 deleterious(0.01) possibly_damaging(0.868) TCGA-FW-A3R5-06 19 55666111 55666111 C T TNNI3 Missense_Mutation p.E124K 0.21 deleterious(0) possibly_damaging(0.477) TCGA-FW-A3R5-06 19 55672734 55672734 G A DNAAF3 Missense_Mutation p.A307V 0.32 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 19 55699491 55699491 C T PTPRH Silent p.R810R 0.32 TCGA-FW-A3R5-06 19 55710208 55710208 G A PTPRH Missense_Mutation p.P498L 0.19 probably_damaging(0.999) TCGA-FW-A3R5-06 19 55739858 55739858 G A AC010327.2 3'UTR 0.19 TCGA-FW-A3R5-06 19 55741794 55741794 G A PPP6R1 3'UTR 0.38 TCGA-FW-A3R5-06 19 55750817 55750817 G A PPP6R1 Silent p.F569F 0.23 TCGA-FW-A3R5-06 19 55757032 55757032 G A PPP6R1 Missense_Mutation p.A81V 0.25 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 19 55814181 55814181 C T BRSK1 Missense_Mutation p.S325L 0.28 deleterious(0.03) benign(0.307) TCGA-FW-A3R5-06 19 55815081 55815081 G A BRSK1 Silent p.G391G 0.21 TCGA-FW-A3R5-06 19 55815961 55815961 G A BRSK1 Missense_Mutation p.E464K 0.43 tolerated(0.86) benign(0.292) TCGA-FW-A3R5-06 19 55823374 55823374 C T BRSK1 Missense_Mutation p.P759S 0.46 tolerated_low_confidence(0.09) benign(0.255) TCGA-FW-A3R5-06 19 55824350 55824350 G A TMEM150B Silent p.F193F 0.27 TCGA-FW-A3R5-06 19 55832399 55832399 C T TMEM150B Nonsense_Mutation p.W2* 0.37 TCGA-FW-A3R5-06 19 55877404 55877404 C T IL11 Missense_Mutation p.G191R 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 19 55889179 55889179 G A TMEM190 Missense_Mutation p.R77Q 0.11 tolerated(0.14) possibly_damaging(0.776) TCGA-FW-A3R5-06 19 55889357 55889357 G A TMEM190 Missense_Mutation p.R107Q 0.27 tolerated_low_confidence(0.22) possibly_damaging(0.776) TCGA-FW-A3R5-06 19 56041213 56041213 G A SBK2 Missense_Mutation p.P312S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 19 56042656 56042656 G A SBK2 Silent p.L104L 0.29 TCGA-FW-A3R5-06 19 56090169 56090169 G A ZNF579 Silent p.F279F 0.27 TCGA-FW-A3R5-06 19 56090216 56090216 G A ZNF579 Missense_Mutation p.P264S 0.21 tolerated(0.18) probably_damaging(0.968) TCGA-FW-A3R5-06 19 56109072 56109072 G A FIZ1 Missense_Mutation p.P54S 0.11 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 19 5612564 5612564 G A SAFB2 Silent p.S207S 0.08 TCGA-FW-A3R5-06 19 56220307 56220307 C T NLRP9 Missense_Mutation p.E983K 0.23 deleterious(0) possibly_damaging(0.862) TCGA-FW-A3R5-06 19 56226561 56226561 G A NLRP9 Silent p.S787S 0.25 TCGA-FW-A3R5-06 19 56235370 56235370 G A NLRP9 Missense_Mutation p.P712L 0.40 deleterious(0) possibly_damaging(0.796) TCGA-FW-A3R5-06 19 56243414 56243414 G A NLRP9 Missense_Mutation p.R595C 0.17 deleterious(0) possibly_damaging(0.719) TCGA-FW-A3R5-06 19 56243490 56243490 G A NLRP9 Silent p.F569F 0.29 TCGA-FW-A3R5-06 19 56243668 56243668 G A NLRP9 Missense_Mutation p.S510F 0.30 tolerated(0.67) possibly_damaging(0.855) TCGA-FW-A3R5-06 19 56244007 56244007 G A NLRP9 Missense_Mutation p.A397V 0.30 deleterious(0.02) benign(0.164) TCGA-FW-A3R5-06 19 56244352 56244352 T C NLRP9 Missense_Mutation p.K282R 0.29 tolerated(0.19) benign(0.093) TCGA-FW-A3R5-06 19 56297165 56297165 C T NLRP11 Silent p.L976L 0.26 TCGA-FW-A3R5-06 19 56300731 56300731 G A NLRP11 Nonsense_Mutation p.Q850* 0.20 TCGA-FW-A3R5-06 19 56320147 56320147 C T NLRP11 Missense_Mutation p.R610K 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 56320560 56320560 G A NLRP11 Silent p.P472P 0.30 TCGA-FW-A3R5-06 19 56320980 56320980 G A NLRP11 Silent p.L332L 0.14 TCGA-FW-A3R5-06 19 56321602 56321602 G A NLRP11 Missense_Mutation p.S125L 0.33 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 19 56368991 56368991 G A NLRP4 Intron 0.28 TCGA-FW-A3R5-06 19 56369377 56369377 C T NLRP4 Silent p.S206S 0.08 TCGA-FW-A3R5-06 19 56369416 56369416 C T NLRP4 Silent p.I219I 0.31 TCGA-FW-A3R5-06 19 56369443 56369443 C T NLRP4 Silent p.F228F 0.28 TCGA-FW-A3R5-06 19 56369660 56369660 G A NLRP4 Missense_Mutation p.G301R 0.23 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 19 56369669 56369669 G A NLRP4 Missense_Mutation p.E304K 0.27 deleterious(0.01) possibly_damaging(0.663) TCGA-FW-A3R5-06 19 56370026 56370026 G A NLRP4 Missense_Mutation p.G423R 0.35 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 19 56370494 56370494 C T NLRP4 Missense_Mutation p.H579Y 0.33 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 19 56372893 56372893 C T NLRP4 Silent p.S666S 0.29 TCGA-FW-A3R5-06 19 56373451 56373451 G A NLRP4 Silent p.T704T 0.31 TCGA-FW-A3R5-06 19 56382215 56382215 G A NLRP4 Missense_Mutation p.E793K 0.27 tolerated(0.22) benign(0.029) TCGA-FW-A3R5-06 19 56392835 56392835 G A NLRP4 Splice_Site p.X956_splice 0.23 TCGA-FW-A3R5-06 19 56392911 56392911 C T NLRP4 Silent p.T981T 0.31 TCGA-FW-A3R5-06 19 56416316 56416316 C T NLRP13 Silent p.E870E 0.33 TCGA-FW-A3R5-06 19 56419205 56419205 C T NLRP13 Silent p.L800L 0.31 TCGA-FW-A3R5-06 19 56423159 56423159 G A NLRP13 Missense_Mutation p.S675L 0.08 deleterious(0.04) possibly_damaging(0.879) TCGA-FW-A3R5-06 19 56423265 56423265 G A NLRP13 Missense_Mutation p.H640Y 0.34 tolerated(0.21) benign(0.295) TCGA-FW-A3R5-06 19 56423271 56423271 G A NLRP13 Missense_Mutation p.L638F 0.27 tolerated(0.72) benign(0.002) TCGA-FW-A3R5-06 19 56423451 56423451 C T NLRP13 Missense_Mutation p.E578K 0.27 deleterious(0.04) benign(0.09) TCGA-FW-A3R5-06 19 56423464 56423464 G A NLRP13 Silent p.V573V 0.27 TCGA-FW-A3R5-06 19 56424057 56424057 C T NLRP13 Missense_Mutation p.V376M 0.32 tolerated(0.07) possibly_damaging(0.651) TCGA-FW-A3R5-06 19 56424120 56424120 G A NLRP13 Missense_Mutation p.P355S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 56424299 56424299 G A NLRP13 Missense_Mutation p.P295L 0.31 tolerated(0.1) benign(0.167) TCGA-FW-A3R5-06 19 56424593 56424593 C T NLRP13 Nonsense_Mutation p.W197* 0.07 TCGA-FW-A3R5-06 19 56424653 56424653 C T NLRP13 Missense_Mutation p.R177K 0.32 tolerated(0.18) benign(0.294) TCGA-FW-A3R5-06 19 56436006 56436006 C T NLRP13 Missense_Mutation p.G136E 0.26 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 19 56443363 56443363 C T NLRP13 Missense_Mutation p.M105I 0.25 tolerated(0.76) benign(0.098) TCGA-FW-A3R5-06 19 56459573 56459573 C T NLRP8 Missense_Mutation p.S102L 0.38 tolerated(0.68) benign(0.006) TCGA-FW-A3R5-06 19 56466553 56466553 G A NLRP8 Missense_Mutation p.D377N 0.21 tolerated(0.48) benign(0.091) TCGA-FW-A3R5-06 19 56466838 56466838 G A NLRP8 Missense_Mutation p.E472K 0.27 tolerated(0.67) benign(0.002) TCGA-FW-A3R5-06 19 56466958 56466958 G A NLRP8 Missense_Mutation p.E512K 0.24 deleterious(0) probably_damaging(0.914) TCGA-FW-A3R5-06 19 56466993 56466993 C T NLRP8 Silent p.F523F 0.24 TCGA-FW-A3R5-06 19 56467057 56467057 C T NLRP8 Missense_Mutation p.P545S 0.33 tolerated(0.26) benign(0.362) TCGA-FW-A3R5-06 19 56467449 56467449 C T NLRP8 Silent p.S675S 0.25 TCGA-FW-A3R5-06 19 56477606 56477606 G A NLRP8 Silent p.L747L 0.29 TCGA-FW-A3R5-06 19 56485099 56485099 G A NLRP8 Silent p.L872L 0.28 TCGA-FW-A3R5-06 19 56490832 56490832 G A NLRP8 Silent p.L983L 0.30 TCGA-FW-A3R5-06 19 56490890 56490890 G A NLRP8 Missense_Mutation p.E1003K 0.28 tolerated(0.22) benign(0.278) TCGA-FW-A3R5-06 19 56499312 56499312 G A NLRP8 3'UTR 0.13 TCGA-FW-A3R5-06 19 56520202 56520202 G A NLRP5 Missense_Mutation p.S164N 0.15 tolerated(0.12) benign(0.009) TCGA-FW-A3R5-06 19 56520206 56520206 G A NLRP5 Silent p.K165K 0.15 TCGA-FW-A3R5-06 19 56538970 56538970 G A NLRP5 Silent p.A457A 0.24 TCGA-FW-A3R5-06 19 56539571 56539571 C T NLRP5 Missense_Mutation p.P658S 0.28 tolerated(0.39) benign(0.077) TCGA-FW-A3R5-06 19 56544947 56544947 C T NLRP5 Silent p.L829L 0.32 TCGA-FW-A3R5-06 19 56545017 56545017 G A NLRP5 Missense_Mutation p.D853N 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 19 56549443 56549443 C T NLRP5 Missense_Mutation p.L890F 0.12 deleterious(0.01) possibly_damaging(0.737) TCGA-FW-A3R5-06 19 56549453 56549453 C T NLRP5 Missense_Mutation p.S893F 0.16 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 19 56552397 56552397 G A NLRP5 Missense_Mutation p.E966K 0.27 tolerated(0.12) benign(0.155) TCGA-FW-A3R5-06 19 56565064 56565064 G A NLRP5 Silent p.R1063R 0.23 TCGA-FW-A3R5-06 19 56691959 56691959 G A GALP Missense_Mutation p.R31Q 0.15 tolerated(0.09) benign(0.004) TCGA-FW-A3R5-06 19 56696615 56696615 G A GALP Silent p.K109K 0.28 TCGA-FW-A3R5-06 19 56701424 56701424 G A ZSCAN5B Silent p.F420F 0.25 TCGA-FW-A3R5-06 19 56701623 56701623 G A ZSCAN5B Missense_Mutation p.P354L 0.26 tolerated(0.23) benign(0.025) TCGA-FW-A3R5-06 19 56701687 56701687 G A ZSCAN5B Missense_Mutation p.H333Y 0.27 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 19 56701922 56701922 C T ZSCAN5B Silent p.G254G 0.31 TCGA-FW-A3R5-06 19 56701923 56701923 C T ZSCAN5B Missense_Mutation p.G254E 0.32 tolerated(0.28) benign(0.263) TCGA-FW-A3R5-06 19 56733072 56733072 G A ZSCAN5A Silent p.L455L 0.27 TCGA-FW-A3R5-06 19 56934979 56934979 C T ZNF583 Missense_Mutation p.H318Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 19 56935685 56935685 C T ZNF583 Missense_Mutation p.P553L 0.36 deleterious_low_confidence(0.03) benign(0.002) TCGA-FW-A3R5-06 19 56952689 56952689 C T ZNF667 Missense_Mutation p.E559K 0.17 tolerated(0.06) probably_damaging(0.991) TCGA-FW-A3R5-06 19 56953494 56953494 G A ZNF667 Silent p.F290F 0.08 TCGA-FW-A3R5-06 19 57065579 57065579 C T ZFP28 Silent p.P475P 0.24 TCGA-FW-A3R5-06 19 57088523 57088523 C T ZNF470 Silent p.T242T 0.22 TCGA-FW-A3R5-06 19 57088760 57088760 C T ZNF470 Silent p.F321F 0.35 TCGA-FW-A3R5-06 19 57089547 57089547 C T ZNF470 Nonsense_Mutation p.Q584* 0.24 TCGA-FW-A3R5-06 19 57133340 57133340 C T ZNF71 Missense_Mutation p.L229F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 19 57175471 57175471 C T ZNF835 Missense_Mutation p.D366N 0.50 deleterious(0.03) possibly_damaging(0.892) TCGA-FW-A3R5-06 19 57176031 57176031 G A ZNF835 Missense_Mutation p.S179L 0.30 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 19 57176210 57176210 G A ZNF835 Silent p.F119F 0.08 TCGA-FW-A3R5-06 19 57176445 57176445 G A ZNF835 Missense_Mutation p.A41V 0.19 tolerated(0.22) benign(0) TCGA-FW-A3R5-06 19 57176574 57176574 C T ZNF835 5'UTR 0.28 TCGA-FW-A3R5-06 19 57285950 57285950 C T ZIM2 3'UTR 0.38 TCGA-FW-A3R5-06 19 57286838 57286838 G A ZIM2 Missense_Mutation p.P268S 0.24 tolerated(0.2) benign(0.056) TCGA-FW-A3R5-06 19 57290806 57290806 G A ZIM2 Silent p.R227R 0.24 TCGA-FW-A3R5-06 19 57293412 57293412 G A ZIM2 Silent p.F185F 0.30 TCGA-FW-A3R5-06 19 57325048 57325048 C T PEG3 Missense_Mutation p.G1588S 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 57325912 57325912 G A PEG3 Missense_Mutation p.H1300Y 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 57326923 57326923 G A PEG3 Missense_Mutation p.R963C 0.27 tolerated(0.24) benign(0.022) TCGA-FW-A3R5-06 19 57327454 57327454 C T PEG3 Missense_Mutation p.E786K 0.29 tolerated(0.2) benign(0.008) TCGA-FW-A3R5-06 19 57327514 57327514 C T PEG3 Missense_Mutation p.E766K 0.20 deleterious(0.04) possibly_damaging(0.521) TCGA-FW-A3R5-06 19 57327538 57327538 C T PEG3 Missense_Mutation p.E758K 0.28 tolerated(0.15) benign(0.019) TCGA-FW-A3R5-06 19 57327956 57327956 C T PEG3 Silent p.Q618Q 0.27 TCGA-FW-A3R5-06 19 57328431 57328431 G A PEG3 Missense_Mutation p.S460L 0.32 deleterious(0.04) possibly_damaging(0.763) TCGA-FW-A3R5-06 19 57328824 57328824 C T PEG3 Missense_Mutation p.G329E 0.18 tolerated(0.05) probably_damaging(0.935) TCGA-FW-A3R5-06 19 57330048 57330048 A T PEG3 Missense_Mutation p.V231E 0.27 deleterious(0) benign(0.282) TCGA-FW-A3R5-06 19 57330049 57330049 C A PEG3 Missense_Mutation p.V231L 0.26 deleterious(0.03) benign(0.035) TCGA-FW-A3R5-06 19 57333046 57333046 G A PEG3 Silent p.D214D 0.29 TCGA-FW-A3R5-06 19 57335885 57335885 G A PEG3 Nonsense_Mutation p.Q47* 0.19 TCGA-FW-A3R5-06 19 57335973 57335973 G A PEG3 Silent p.A17A 0.31 TCGA-FW-A3R5-06 19 5754219 5754219 C T CATSPERD Missense_Mutation p.S414L 0.30 tolerated(1) benign(0) TCGA-FW-A3R5-06 19 5757925 5757925 G A CATSPERD Silent p.G450G 0.32 TCGA-FW-A3R5-06 19 5759096 5759096 G A CATSPERD Splice_Site p.X457_splice 0.22 TCGA-FW-A3R5-06 19 57640386 57640386 G A USP29 Missense_Mutation p.D115N 0.21 tolerated(0.4) benign(0) TCGA-FW-A3R5-06 19 57641153 57641153 G A USP29 Silent p.Q370Q 0.27 TCGA-FW-A3R5-06 19 57641207 57641207 G A USP29 Missense_Mutation p.M388I 0.30 tolerated(0.13) benign(0.01) TCGA-FW-A3R5-06 19 57641670 57641670 G A USP29 Missense_Mutation p.E543K 0.30 tolerated(0.07) probably_damaging(0.91) TCGA-FW-A3R5-06 19 57642007 57642007 G A USP29 Missense_Mutation p.G655E 0.27 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 19 57642421 57642421 G A USP29 Missense_Mutation p.G793E 0.18 tolerated(0.07) probably_damaging(0.991) TCGA-FW-A3R5-06 19 57642485 57642485 G A USP29 Silent p.V814V 0.33 TCGA-FW-A3R5-06 19 57642599 57642599 C T USP29 Silent p.A852A 0.26 TCGA-FW-A3R5-06 19 57642902 57642902 G A USP29 3'UTR 0.28 TCGA-FW-A3R5-06 19 57646362 57646362 C T ZIM3 Missense_Mutation p.G448E 0.23 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 57646505 57646505 G A ZIM3 Silent p.F400F 0.29 TCGA-FW-A3R5-06 19 57646757 57646757 G A ZIM3 Silent p.F316F 0.28 TCGA-FW-A3R5-06 19 57646787 57646787 G A ZIM3 Silent p.P306P 0.23 TCGA-FW-A3R5-06 19 57648289 57648289 T A ZIM3 Nonsense_Mutation p.K65* 0.29 TCGA-FW-A3R5-06 19 57670611 57670611 G A DUXA Silent p.F72F 0.23 TCGA-FW-A3R5-06 19 57672040 57672040 C T DUXA Missense_Mutation p.E51K 0.21 deleterious(0.02) probably_damaging(0.936) TCGA-FW-A3R5-06 19 5770965 5770965 G A CATSPERD Missense_Mutation p.D549N 0.29 tolerated(0.07) possibly_damaging(0.867) TCGA-FW-A3R5-06 19 57746631 57746631 C T AURKC Missense_Mutation p.P259L 0.30 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 19 57839069 57839069 C T ZNF543 Intron 0.23 TCGA-FW-A3R5-06 19 5785466 5785466 G A CTB-54O9.9 Missense_Mutation p.P25L 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 57866755 57866755 C T ZNF304 Intron 0.20 TCGA-FW-A3R5-06 19 57868278 57868278 C T ZNF304 Silent p.S347S 0.29 TCGA-FW-A3R5-06 19 57869041 57869041 C T ZNF304 Missense_Mutation p.L602F 0.31 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 19 57910226 57910226 C T ZNF548 Nonsense_Mutation p.Q203* 0.23 TCGA-FW-A3R5-06 19 58049491 58049491 C T ZNF549 Silent p.S373S 0.28 TCGA-FW-A3R5-06 19 58115674 58115674 C T ZNF530 Silent p.A20A 0.08 TCGA-FW-A3R5-06 19 58118073 58118073 C T ZNF530 Missense_Mutation p.L394F 0.31 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 19 58118247 58118247 C T ZNF530 Nonsense_Mutation p.R452* 0.22 TCGA-FW-A3R5-06 19 58118530 58118530 C T ZNF530 Missense_Mutation p.P546L 0.07 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 19 58190262 58190262 G A ZSCAN4 Missense_Mutation p.E431K 0.18 tolerated(0.16) benign(0.004) TCGA-FW-A3R5-06 19 58231851 58231851 A T ZNF671 Nonstop_Mutation p.*535Kext*10 0.36 TCGA-FW-A3R5-06 19 58232411 58232411 T A ZNF671 Missense_Mutation p.K348I 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 58367558 58367558 C T CTD-2583A14.10 Silent p.Y40Y 0.12 TCGA-FW-A3R5-06 19 58419777 58419777 G A ZNF417 3'UTR 0.21 TCGA-FW-A3R5-06 19 58438240 58438240 G A ZNF418 Nonsense_Mutation p.R437* 0.24 TCGA-FW-A3R5-06 19 58439036 58439036 G A ZNF418 Silent p.S171S 0.32 TCGA-FW-A3R5-06 19 58453672 58453672 G A ZNF256 Silent p.F168F 0.08 TCGA-FW-A3R5-06 19 58491150 58491150 G A ZNF606 Missense_Mutation p.H300Y 0.26 tolerated(0.09) benign(0.163) TCGA-FW-A3R5-06 19 58551905 58551905 C T ZSCAN1 Missense_Mutation p.P153L 0.20 deleterious(0) possibly_damaging(0.886) TCGA-FW-A3R5-06 19 58565267 58565267 G A ZSCAN1 Missense_Mutation p.E359K 0.33 tolerated(0.86) possibly_damaging(0.587) TCGA-FW-A3R5-06 19 58565276 58565276 C T ZSCAN1 Missense_Mutation p.P362S 0.36 tolerated(0.86) benign(0.024) TCGA-FW-A3R5-06 19 58579887 58579887 C T ZNF135 3'UTR 0.45 TCGA-FW-A3R5-06 19 58598337 58598337 C T ZSCAN18 Silent p.G283G 0.16 TCGA-FW-A3R5-06 19 58598338 58598338 C T ZSCAN18 Missense_Mutation p.G283E 0.16 tolerated(0.61) benign(0.004) TCGA-FW-A3R5-06 19 5866527 5866527 G A FUT5 3'UTR 0.26 TCGA-FW-A3R5-06 19 5867474 5867474 G A FUT5 Missense_Mutation p.P88L 0.11 tolerated(0.23) benign(0.16) TCGA-FW-A3R5-06 19 5867495 5867495 C T FUT5 Nonsense_Mutation p.W81* 0.20 TCGA-FW-A3R5-06 19 58805736 58805736 C T ZNF8 Missense_Mutation p.P188S 0.34 tolerated(0.74) benign(0.002) TCGA-FW-A3R5-06 19 58805887 58805887 C T ZNF8 Missense_Mutation p.S238F 0.18 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 19 58863598 58863598 C T A1BG Intron 0.11 TCGA-FW-A3R5-06 19 58879844 58879844 G A ZNF837 Silent p.L286L 0.33 TCGA-FW-A3R5-06 19 58906062 58906062 C T RPS5 Missense_Mutation p.S187F 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 58928497 58928497 C T ZNF584 Silent p.P204P 0.20 TCGA-FW-A3R5-06 19 58945977 58945977 G A ZNF132 Silent p.I278I 0.26 TCGA-FW-A3R5-06 19 58966695 58966695 C T ZNF324B Silent p.A128A 0.28 TCGA-FW-A3R5-06 19 603589 603589 C T HCN2 Silent p.L226L 0.27 TCGA-FW-A3R5-06 19 6187365 6187365 C T ACSBG2 Missense_Mutation p.P538S 0.27 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 19 6222145 6222145 G A MLLT1 Missense_Mutation p.S366F 0.23 deleterious(0.02) possibly_damaging(0.485) TCGA-FW-A3R5-06 19 625222 625222 G A POLRMT Silent p.F285F 0.25 TCGA-FW-A3R5-06 19 6309787 6309787 G A ACER1 Silent p.L137L 0.16 TCGA-FW-A3R5-06 19 6309800 6309800 G A ACER1 Silent p.T132T 0.17 TCGA-FW-A3R5-06 19 6309836 6309836 G A ACER1 Silent p.F120F 0.29 TCGA-FW-A3R5-06 19 6312194 6312194 G A ACER1 Missense_Mutation p.R106C 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 19 6312195 6312195 G A ACER1 Silent p.P105P 0.22 TCGA-FW-A3R5-06 19 6333529 6333529 C T ACER1 Missense_Mutation p.V12M 0.32 deleterious(0) possibly_damaging(0.779) TCGA-FW-A3R5-06 19 6364601 6364601 C T CLPP Missense_Mutation p.S169L 0.38 deleterious(0) possibly_damaging(0.896) TCGA-FW-A3R5-06 19 6375600 6375600 C T PSPN Missense_Mutation p.R59H 0.28 tolerated(0.05) possibly_damaging(0.794) TCGA-FW-A3R5-06 19 6381394 6381394 G A GTF2F1 Missense_Mutation p.P332S 0.19 tolerated(0.32) probably_damaging(0.999) TCGA-FW-A3R5-06 19 6421694 6421694 G A KHSRP Missense_Mutation p.P118S 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-FW-A3R5-06 19 6433541 6433541 C T SLC25A41 Missense_Mutation p.G55D 0.25 deleterious(0.03) probably_damaging(0.911) TCGA-FW-A3R5-06 19 6441968 6441968 G A SLC25A23 3'UTR 0.33 TCGA-FW-A3R5-06 19 6466927 6466927 C T CRB3 Intron 0.39 TCGA-FW-A3R5-06 19 6467432 6467432 G A DENND1C 3'UTR 0.26 TCGA-FW-A3R5-06 19 6467622 6467622 C T DENND1C Missense_Mutation p.E767K 0.36 tolerated_low_confidence(0.13) benign(0.278) TCGA-FW-A3R5-06 19 6468113 6468113 C T DENND1C Nonsense_Mutation p.W603* 0.33 TCGA-FW-A3R5-06 19 6479870 6479870 C T DENND1C Silent p.Q42Q 0.35 TCGA-FW-A3R5-06 19 648091 648091 G A RNF126 3'UTR 0.38 TCGA-FW-A3R5-06 19 6495101 6495101 G A TUBB4A 3'UTR 0.40 TCGA-FW-A3R5-06 19 6495113 6495113 G A TUBB4A 3'UTR 0.20 TCGA-FW-A3R5-06 19 6534669 6534669 C T TNFSF9 Silent p.S119S 0.20 TCGA-FW-A3R5-06 19 6665012 6665012 G A TNFSF14 Silent p.V216V 0.32 TCGA-FW-A3R5-06 19 6678261 6678261 G A C3 Silent p.F1584F 0.39 TCGA-FW-A3R5-06 19 6678411 6678411 G A C3 Silent p.I1562I 0.30 TCGA-FW-A3R5-06 19 6685006 6685006 G A C3 Missense_Mutation p.S1321L 0.34 deleterious(0.02) benign(0.195) TCGA-FW-A3R5-06 19 6685009 6685009 C T C3 Missense_Mutation p.R1320Q 0.24 deleterious(0.05) possibly_damaging(0.455) TCGA-FW-A3R5-06 19 6685134 6685134 G A C3 Silent p.A1278A 0.23 TCGA-FW-A3R5-06 19 6697549 6697549 G A C3 Missense_Mutation p.H868Y 0.17 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 19 6697558 6697558 C T C3 Missense_Mutation p.E865K 0.20 deleterious(0.03) probably_damaging(0.93) TCGA-FW-A3R5-06 19 6697719 6697719 C T C3 Missense_Mutation p.E843K 0.58 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 6697782 6697782 C T C3 Missense_Mutation p.E822K 0.09 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 19 6702214 6702214 C T C3 Silent p.T788T 0.19 TCGA-FW-A3R5-06 19 6702545 6702545 C T C3 Missense_Mutation p.R764Q 0.26 deleterious(0) possibly_damaging(0.848) TCGA-FW-A3R5-06 19 6711049 6711049 G A C3 Silent p.L476L 0.17 TCGA-FW-A3R5-06 19 6711072 6711072 C T C3 Missense_Mutation p.E469K 0.11 tolerated(0.09) benign(0.142) TCGA-FW-A3R5-06 19 6711196 6711196 C T C3 Silent p.K427K 0.17 TCGA-FW-A3R5-06 19 6712357 6712357 C T C3 Missense_Mutation p.E394K 0.30 tolerated(0.85) benign(0.003) TCGA-FW-A3R5-06 19 6712527 6712527 C T C3 Missense_Mutation p.D371N 0.17 tolerated(0.17) benign(0.066) TCGA-FW-A3R5-06 19 6731105 6731105 G A GPR108 Silent p.S484S 0.28 TCGA-FW-A3R5-06 19 6733289 6733289 G A GPR108 Silent p.P249P 0.32 TCGA-FW-A3R5-06 19 6760821 6760821 C T SH2D3A Missense_Mutation p.E83K 0.30 deleterious(0) possibly_damaging(0.906) TCGA-FW-A3R5-06 19 6832117 6832117 C T VAV1 Missense_Mutation p.L472F 0.32 tolerated(0.07) benign(0.015) TCGA-FW-A3R5-06 19 6832146 6832146 C T VAV1 Silent p.G481G 0.33 TCGA-FW-A3R5-06 19 6833264 6833264 C T VAV1 Silent p.T526T 0.13 TCGA-FW-A3R5-06 19 6833918 6833918 G A VAV1 Splice_Site p.X578_splice 0.27 TCGA-FW-A3R5-06 19 6833919 6833919 G A VAV1 Missense_Mutation p.D578N 0.26 tolerated(0.78) benign(0.001) TCGA-FW-A3R5-06 19 6857138 6857138 G A VAV1 3'Flank 0.18 TCGA-FW-A3R5-06 19 6896430 6896430 C T EMR1 Missense_Mutation p.T39I 0.15 deleterious(0.01) possibly_damaging(0.786) TCGA-FW-A3R5-06 19 6896531 6896531 G A EMR1 Missense_Mutation p.D73N 0.33 tolerated(0.17) benign(0.201) TCGA-FW-A3R5-06 19 6897452 6897452 C T EMR1 Silent p.C136C 0.33 TCGA-FW-A3R5-06 19 6916364 6916364 G A EMR1 Missense_Mutation p.E469K 0.25 tolerated(0.09) probably_damaging(0.991) TCGA-FW-A3R5-06 19 6919588 6919588 G T EMR1 Missense_Mutation p.V484L 0.35 tolerated(0.35) benign(0.005) TCGA-FW-A3R5-06 19 6937593 6937593 G A EMR1 Silent p.T863T 0.18 TCGA-FW-A3R5-06 19 6981116 6981116 C T EMR4P RNA 0.38 TCGA-FW-A3R5-06 19 7076403 7076403 C T ZNF557 Silent p.T44T 0.29 TCGA-FW-A3R5-06 19 7122765 7122765 G A INSR Missense_Mutation p.P1130L 0.31 tolerated(0.27) benign(0.353) TCGA-FW-A3R5-06 19 7152762 7152762 G A INSR Silent p.L736L 0.27 TCGA-FW-A3R5-06 19 7509157 7509157 C T ARHGEF18 Silent p.A288A 0.25 TCGA-FW-A3R5-06 19 7570318 7570318 G A C19orf45 Silent p.E297E 0.22 TCGA-FW-A3R5-06 19 757826 757826 G A MISP Missense_Mutation p.E294K 0.11 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 19 757886 757886 C T MISP Missense_Mutation p.R314W 0.38 deleterious(0.01) possibly_damaging(0.785) TCGA-FW-A3R5-06 19 7584262 7584262 C T ZNF358 Missense_Mutation p.P45L 0.32 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 19 7607462 7607462 C T PNPLA6 Missense_Mutation p.P432L 0.20 tolerated(0.14) benign(0.003) TCGA-FW-A3R5-06 19 7618780 7618780 C T PNPLA6 Silent p.P770P 0.20 TCGA-FW-A3R5-06 19 7619939 7619939 C T PNPLA6 Missense_Mutation p.S942L 0.43 deleterious(0) benign(0.375) TCGA-FW-A3R5-06 19 7670265 7670265 C T CAMSAP3 Missense_Mutation p.P101L 0.15 tolerated(0.12) probably_damaging(0.974) TCGA-FW-A3R5-06 19 7672704 7672704 C T CAMSAP3 Intron 0.24 TCGA-FW-A3R5-06 19 7673059 7673059 C T CAMSAP3 Silent p.F250F 0.27 TCGA-FW-A3R5-06 19 7675417 7675417 C T CAMSAP3 Silent p.L299L 0.25 TCGA-FW-A3R5-06 19 7675818 7675818 G A CAMSAP3 Splice_Site p.X377_splice 0.23 TCGA-FW-A3R5-06 19 7675993 7675993 C T CAMSAP3 Silent p.F381F 0.32 TCGA-FW-A3R5-06 19 7677065 7677065 G A CAMSAP3 Silent p.V589V 0.35 TCGA-FW-A3R5-06 19 7681496 7681496 G A CAMSAP3 Missense_Mutation p.R1094K 0.25 tolerated(1) possibly_damaging(0.87) TCGA-FW-A3R5-06 19 7682521 7682521 G A CAMSAP3 Missense_Mutation p.E1167K 0.23 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 19 7684729 7684729 G A XAB2 Missense_Mutation p.R804W 0.20 deleterious(0.02) possibly_damaging(0.586) TCGA-FW-A3R5-06 19 7705860 7705860 C T STXBP2 Missense_Mutation p.H134Y 0.37 deleterious(0.04) possibly_damaging(0.659) TCGA-FW-A3R5-06 19 7707367 7707367 G A STXBP2 Missense_Mutation p.E283K 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-FW-A3R5-06 19 7711159 7711159 G A STXBP2 Missense_Mutation p.E461K 0.33 tolerated(0.52) benign(0.016) TCGA-FW-A3R5-06 19 7712089 7712089 C T STXBP2 Silent p.F498F 0.26 TCGA-FW-A3R5-06 19 7734761 7734761 G A RETN Missense_Mutation p.G58E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 7742573 7742573 G A C19orf59 Missense_Mutation p.D49N 0.24 tolerated(0.23) possibly_damaging(0.908) TCGA-FW-A3R5-06 19 7754151 7754151 C T FCER2 Silent p.E298E 0.27 TCGA-FW-A3R5-06 19 7755310 7755310 G A FCER2 Silent p.I201I 0.25 TCGA-FW-A3R5-06 19 7761754 7761754 C T FCER2 Silent p.R142R 0.25 TCGA-FW-A3R5-06 19 7794920 7794920 C T CLEC4G Silent p.G204G 0.31 TCGA-FW-A3R5-06 19 7796584 7796584 G A CLEC4G Silent p.V43V 0.34 TCGA-FW-A3R5-06 19 7805415 7805415 G A CD209 3'UTR 0.13 TCGA-FW-A3R5-06 19 7805422 7805422 G A CD209 3'UTR 0.25 TCGA-FW-A3R5-06 19 7805439 7805439 G A CD209 3'UTR 0.22 TCGA-FW-A3R5-06 19 7805483 7805483 G A CD209 3'UTR 0.28 TCGA-FW-A3R5-06 19 7807894 7807894 G A CD209 3'UTR 0.38 TCGA-FW-A3R5-06 19 7807996 7807996 C T CD209 Missense_Mutation p.A382T 0.30 tolerated(0.69) benign(0.002) TCGA-FW-A3R5-06 19 7810695 7810695 G A CD209 Silent p.L153L 0.30 TCGA-FW-A3R5-06 19 7812358 7812358 G A CD209 Missense_Mutation p.L14F 0.29 tolerated(0.67) benign(0.008) TCGA-FW-A3R5-06 19 7812434 7812434 G A CD209 5'Flank 0.23 TCGA-FW-A3R5-06 19 7828164 7828164 C T CLEC4M Silent p.S4S 0.61 TCGA-FW-A3R5-06 19 7830111 7830111 C T CLEC4M Silent p.S57S 0.25 TCGA-FW-A3R5-06 19 7830562 7830562 G A CLEC4M Missense_Mutation p.E85K 0.25 tolerated(1) benign(0.066) TCGA-FW-A3R5-06 19 7833869 7833869 G A CLEC4M Missense_Mutation p.E399K 0.20 deleterious_low_confidence(0.03) probably_damaging(0.955) TCGA-FW-A3R5-06 19 7833881 7833881 C T CLEC4M 3'UTR 0.22 TCGA-FW-A3R5-06 19 7987638 7987638 C T SNAPC2 Missense_Mutation p.P332S 0.27 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-FW-A3R5-06 19 8121312 8121312 G A CCL25 Missense_Mutation p.R85K 0.26 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 19 8130986 8130986 G A FBN3 Silent p.F2749F 0.24 TCGA-FW-A3R5-06 19 8130997 8130997 C T FBN3 Missense_Mutation p.E2746K 0.25 tolerated(0.15) benign(0.005) TCGA-FW-A3R5-06 19 8136997 8136997 C T FBN3 Missense_Mutation p.E2675K 0.30 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 19 8146261 8146261 C T FBN3 Silent p.E2439E 0.27 TCGA-FW-A3R5-06 19 8151201 8151201 C T FBN3 Missense_Mutation p.E2255K 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 8152010 8152010 G A FBN3 Silent p.V2235V 0.19 TCGA-FW-A3R5-06 19 815761 815761 C T LPPR3 Missense_Mutation p.D56N 0.15 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 19 8168563 8168563 C T FBN3 Missense_Mutation p.E1608K 0.25 deleterious(0) possibly_damaging(0.459) TCGA-FW-A3R5-06 19 8174515 8174515 C T FBN3 Missense_Mutation p.D1486N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 19 8175746 8175746 C T FBN3 Missense_Mutation p.G1439E 0.06 deleterious(0.01) benign(0.41) TCGA-FW-A3R5-06 19 8176871 8176871 G A FBN3 Silent p.F1317F 0.35 TCGA-FW-A3R5-06 19 8180457 8180457 G A FBN3 Silent p.S1260S 0.21 TCGA-FW-A3R5-06 19 8181592 8181592 G A FBN3 Silent p.G1226G 0.11 TCGA-FW-A3R5-06 19 8182167 8182167 C T FBN3 Missense_Mutation p.E1158K 0.18 deleterious(0) possibly_damaging(0.744) TCGA-FW-A3R5-06 19 8188819 8188819 C T FBN3 Silent p.R935R 0.26 TCGA-FW-A3R5-06 19 8193951 8193951 G A FBN3 Missense_Mutation p.P753S 0.29 tolerated(0.31) benign(0.016) TCGA-FW-A3R5-06 19 8196452 8196452 G A FBN3 Missense_Mutation p.P659L 0.11 deleterious(0) possibly_damaging(0.77) TCGA-FW-A3R5-06 19 8200926 8200926 G A FBN3 Missense_Mutation p.R504C 0.21 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 19 8200927 8200927 G A FBN3 Silent p.G503G 0.24 TCGA-FW-A3R5-06 19 8206855 8206855 G A FBN3 Silent p.F236F 0.21 TCGA-FW-A3R5-06 19 8212211 8212211 C T FBN3 Missense_Mutation p.G52S 0.29 tolerated(0.37) benign(0.037) TCGA-FW-A3R5-06 19 828354 828354 C T AZU1 Silent p.F61F 0.17 TCGA-FW-A3R5-06 19 8397899 8397899 C T KANK3 Silent p.T645T 0.22 TCGA-FW-A3R5-06 19 841055 841055 C T PRTN3 Missense_Mutation p.A16V 0.29 tolerated(0.1) unknown(0) TCGA-FW-A3R5-06 19 8530211 8530211 C T HNRNPM Missense_Mutation p.P148S 0.09 tolerated(0.07) benign(0.395) TCGA-FW-A3R5-06 19 8530212 8530212 C T HNRNPM Missense_Mutation p.P148L 0.09 deleterious(0.05) benign(0.253) TCGA-FW-A3R5-06 19 8531249 8531249 C T HNRNPM Missense_Mutation p.S254F 0.26 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 19 8531250 8531250 C T HNRNPM Silent p.S254S 0.26 TCGA-FW-A3R5-06 19 856138 856138 C T ELANE Missense_Mutation p.P260S 0.21 tolerated(0.07) benign(0.074) TCGA-FW-A3R5-06 19 8563993 8563993 G A PRAM1 Silent p.V233V 0.27 TCGA-FW-A3R5-06 19 8590392 8590392 G A MYO1F Missense_Mutation p.P942L 0.36 tolerated(0.1) benign(0.01) TCGA-FW-A3R5-06 19 8591700 8591700 C T MYO1F Missense_Mutation p.R865K 0.27 tolerated(0.52) benign(0.002) TCGA-FW-A3R5-06 19 8601135 8601135 C T MYO1F Splice_Site p.X681_splice 0.13 TCGA-FW-A3R5-06 19 8609249 8609249 C T MYO1F Missense_Mutation p.A486T 0.33 tolerated(0.26) benign(0.038) TCGA-FW-A3R5-06 19 8610561 8610561 G A MYO1F Silent p.V443V 0.18 TCGA-FW-A3R5-06 19 8615558 8615558 C T MYO1F Silent p.G264G 0.26 TCGA-FW-A3R5-06 19 8619417 8619417 C T MYO1F Silent p.T90T 0.23 TCGA-FW-A3R5-06 19 8651042 8651042 C T ADAMTS10 Missense_Mutation p.R875K 0.14 tolerated(0.73) benign(0.004) TCGA-FW-A3R5-06 19 8651597 8651597 C T ADAMTS10 Missense_Mutation p.G750R 0.31 tolerated(0.06) possibly_damaging(0.685) TCGA-FW-A3R5-06 19 8654132 8654132 C T ADAMTS10 Missense_Mutation p.G718R 0.23 tolerated(0.66) benign(0.049) TCGA-FW-A3R5-06 19 8656696 8656696 G A ADAMTS10 Silent p.S595S 0.17 TCGA-FW-A3R5-06 19 8656896 8656896 C T ADAMTS10 Missense_Mutation p.S560N 0.23 deleterious(0) possibly_damaging(0.688) TCGA-FW-A3R5-06 19 8660990 8660990 G A ADAMTS10 Missense_Mutation p.S435F 0.34 tolerated(0.09) possibly_damaging(0.878) TCGA-FW-A3R5-06 19 8670542 8670542 G A ADAMTS10 Silent p.L18L 0.32 TCGA-FW-A3R5-06 19 868150 868150 G A MED16 Missense_Mutation p.P862L 0.26 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 19 868284 868284 G A MED16 Intron 0.28 TCGA-FW-A3R5-06 19 8807884 8807884 G A ACTL9 Silent p.L390L 0.29 TCGA-FW-A3R5-06 19 8807901 8807901 C T ACTL9 Missense_Mutation p.G384D 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 8807902 8807902 C T ACTL9 Missense_Mutation p.G384S 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 19 8808219 8808219 C T ACTL9 Missense_Mutation p.R278Q 0.24 tolerated(0.16) benign(0.006) TCGA-FW-A3R5-06 19 8808591 8808591 C T ACTL9 Missense_Mutation p.S154N 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 19 8809083 8809083 C T ACTL9 5'UTR 0.31 TCGA-FW-A3R5-06 19 8841548 8841548 C T OR2Z1 Missense_Mutation p.S53F 0.29 tolerated(0.17) benign(0.153) TCGA-FW-A3R5-06 19 8841655 8841655 G A OR2Z1 Missense_Mutation p.E89K 0.29 tolerated(0.74) benign(0.006) TCGA-FW-A3R5-06 19 8922431 8922431 G A ZNF558 Silent p.F245F 0.35 TCGA-FW-A3R5-06 19 8931968 8931968 G A ZNF558 Silent p.F45F 0.35 TCGA-FW-A3R5-06 19 8971824 8971824 C T MUC16 Silent p.T14256T 0.33 TCGA-FW-A3R5-06 19 8976750 8976750 G A MUC16 Missense_Mutation p.L14106F 0.24 probably_damaging(0.999) TCGA-FW-A3R5-06 19 8987264 8987264 C T MUC16 Missense_Mutation p.M13941I 0.17 probably_damaging(0.963) TCGA-FW-A3R5-06 19 8993436 8993436 G A MUC16 Silent p.L13885L 0.08 TCGA-FW-A3R5-06 19 8997177 8997177 G A MUC16 Silent p.S13673S 0.28 TCGA-FW-A3R5-06 19 9000453 9000453 G A MUC16 Missense_Mutation p.L13511F 0.22 probably_damaging(0.984) TCGA-FW-A3R5-06 19 9002672 9002672 G A MUC16 Missense_Mutation p.P13382S 0.20 possibly_damaging(0.847) TCGA-FW-A3R5-06 19 9009273 9009273 G A MUC16 Missense_Mutation p.S13067F 0.24 benign(0.344) TCGA-FW-A3R5-06 19 9009648 9009648 C T MUC16 Silent p.E13026E 0.30 TCGA-FW-A3R5-06 19 9009703 9009703 G A MUC16 Missense_Mutation p.P13008L 0.25 possibly_damaging(0.879) TCGA-FW-A3R5-06 19 9014585 9014585 C T MUC16 Missense_Mutation p.G12797D 0.20 possibly_damaging(0.822) TCGA-FW-A3R5-06 19 9014622 9014622 C T MUC16 Missense_Mutation p.E12785K 0.21 possibly_damaging(0.739) TCGA-FW-A3R5-06 19 9014636 9014636 G A MUC16 Missense_Mutation p.P12780L 0.21 benign(0.433) TCGA-FW-A3R5-06 19 9017436 9017436 C T MUC16 Missense_Mutation p.E12630K 0.10 possibly_damaging(0.593) TCGA-FW-A3R5-06 19 9017450 9017450 G A MUC16 Missense_Mutation p.P12625L 0.08 benign(0.096) TCGA-FW-A3R5-06 19 9018484 9018484 G A MUC16 Missense_Mutation p.P12564S 0.22 benign(0.136) TCGA-FW-A3R5-06 19 9021059 9021059 C T MUC16 Missense_Mutation p.G12422S 0.17 benign(0.095) TCGA-FW-A3R5-06 19 9028347 9028347 G A MUC16 Missense_Mutation p.R12149C 0.28 probably_damaging(0.923) TCGA-FW-A3R5-06 19 9045590 9045590 G A MUC16 Missense_Mutation p.A12014V 0.33 benign(0.008) TCGA-FW-A3R5-06 19 9046410 9046410 C T MUC16 Missense_Mutation p.E11741K 0.27 benign(0.007) TCGA-FW-A3R5-06 19 9046907 9046907 G A MUC16 Missense_Mutation p.A11575V 0.27 benign(0.234) TCGA-FW-A3R5-06 19 9047750 9047750 G A MUC16 Missense_Mutation p.S11294F 0.28 possibly_damaging(0.702) TCGA-FW-A3R5-06 19 9047963 9047963 G A MUC16 Missense_Mutation p.S11223L 0.33 possibly_damaging(0.702) TCGA-FW-A3R5-06 19 9048259 9048259 C T MUC16 Silent p.E11124E 0.29 TCGA-FW-A3R5-06 19 9048826 9048826 G A MUC16 Silent p.T10935T 0.34 TCGA-FW-A3R5-06 19 9049049 9049049 G A MUC16 Missense_Mutation p.S10861F 0.27 possibly_damaging(0.844) TCGA-FW-A3R5-06 19 9049182 9049182 C T MUC16 Missense_Mutation p.E10817K 0.33 benign(0.003) TCGA-FW-A3R5-06 19 9049518 9049518 C T MUC16 Missense_Mutation p.E10705K 0.06 benign(0.402) TCGA-FW-A3R5-06 19 9049948 9049948 G A MUC16 Silent p.F10561F 0.30 TCGA-FW-A3R5-06 19 9056223 9056223 C T MUC16 Missense_Mutation p.G10408E 0.26 benign(0.007) TCGA-FW-A3R5-06 19 9056224 9056224 C T MUC16 Missense_Mutation p.G10408R 0.18 benign(0.001) TCGA-FW-A3R5-06 19 9056435 9056435 G A MUC16 Silent p.F10337F 0.29 TCGA-FW-A3R5-06 19 9056563 9056563 G A MUC16 Missense_Mutation p.P10295S 0.20 benign(0) TCGA-FW-A3R5-06 19 9057615 9057615 G A MUC16 Missense_Mutation p.S9944F 0.27 unknown(0) TCGA-FW-A3R5-06 19 9057713 9057713 C T MUC16 Missense_Mutation p.M9911I 0.08 unknown(0) TCGA-FW-A3R5-06 19 9057754 9057754 G A MUC16 Missense_Mutation p.L9898F 0.26 unknown(0) TCGA-FW-A3R5-06 19 9057787 9057787 C T MUC16 Missense_Mutation p.E9887K 0.33 unknown(0) TCGA-FW-A3R5-06 19 9057962 9057962 G A MUC16 Silent p.S9828S 0.27 TCGA-FW-A3R5-06 19 9058360 9058360 C T MUC16 Missense_Mutation p.G9696R 0.24 unknown(0) TCGA-FW-A3R5-06 19 9058581 9058581 G A MUC16 Missense_Mutation p.P9622L 0.29 unknown(0) TCGA-FW-A3R5-06 19 9058656 9058656 G A MUC16 Missense_Mutation p.S9597F 0.27 unknown(0) TCGA-FW-A3R5-06 19 9059450 9059450 G A MUC16 Silent p.S9332S 0.23 TCGA-FW-A3R5-06 19 9059860 9059860 C T MUC16 Missense_Mutation p.E9196K 0.35 unknown(0) TCGA-FW-A3R5-06 19 9060569 9060569 G A MUC16 Silent p.L8959L 0.29 TCGA-FW-A3R5-06 19 9060664 9060664 C T MUC16 Missense_Mutation p.E8928K 0.25 unknown(0) TCGA-FW-A3R5-06 19 9060837 9060837 G A MUC16 Missense_Mutation p.S8870F 0.31 unknown(0) TCGA-FW-A3R5-06 19 9061005 9061005 C T MUC16 Missense_Mutation p.G8814E 0.27 unknown(0) TCGA-FW-A3R5-06 19 9061161 9061161 G A MUC16 Missense_Mutation p.S8762L 0.20 unknown(0) TCGA-FW-A3R5-06 19 9061180 9061180 G A MUC16 Missense_Mutation p.P8756S 0.19 unknown(0) TCGA-FW-A3R5-06 19 9061487 9061487 C T MUC16 Silent p.V8653V 0.25 TCGA-FW-A3R5-06 19 9061525 9061525 G A MUC16 Missense_Mutation p.P8641S 0.28 unknown(0) TCGA-FW-A3R5-06 19 9062045 9062045 G A MUC16 Silent p.F8467F 0.20 TCGA-FW-A3R5-06 19 9062075 9062075 C T MUC16 Silent p.R8457R 0.20 TCGA-FW-A3R5-06 19 9062169 9062169 C T MUC16 Missense_Mutation p.R8426K 0.35 unknown(0) TCGA-FW-A3R5-06 19 9062500 9062500 C T MUC16 Missense_Mutation p.E8316K 0.31 unknown(0) TCGA-FW-A3R5-06 19 9063345 9063345 G A MUC16 Missense_Mutation p.S8034L 0.30 unknown(0) TCGA-FW-A3R5-06 19 9063965 9063965 G A MUC16 Silent p.S7827S 0.28 TCGA-FW-A3R5-06 19 9064290 9064290 G A MUC16 Missense_Mutation p.S7719L 0.32 unknown(0) TCGA-FW-A3R5-06 19 9064299 9064299 G A MUC16 Missense_Mutation p.P7716L 0.14 unknown(0) TCGA-FW-A3R5-06 19 9064305 9064305 G A MUC16 Missense_Mutation p.P7714L 0.32 unknown(0) TCGA-FW-A3R5-06 19 9064619 9064619 G A MUC16 Silent p.A7609A 0.25 TCGA-FW-A3R5-06 19 9064667 9064667 G A MUC16 Silent p.S7593S 0.29 TCGA-FW-A3R5-06 19 9064856 9064856 C T MUC16 Silent p.R7530R 0.27 TCGA-FW-A3R5-06 19 9065396 9065396 G A MUC16 Silent p.S7350S 0.24 TCGA-FW-A3R5-06 19 9065888 9065888 C T MUC16 Silent p.V7186V 0.08 TCGA-FW-A3R5-06 19 9066331 9066331 A T MUC16 Missense_Mutation p.S7039T 0.27 unknown(0) TCGA-FW-A3R5-06 19 9066520 9066520 G A MUC16 Missense_Mutation p.P6976S 0.34 unknown(0) TCGA-FW-A3R5-06 19 9067224 9067224 G A MUC16 Missense_Mutation p.P6741L 0.24 unknown(0) TCGA-FW-A3R5-06 19 9067464 9067464 C T MUC16 Missense_Mutation p.G6661E 0.29 unknown(0) TCGA-FW-A3R5-06 19 9067484 9067484 G A MUC16 Silent p.S6654S 0.31 TCGA-FW-A3R5-06 19 9067623 9067623 G A MUC16 Missense_Mutation p.S6608L 0.07 unknown(0) TCGA-FW-A3R5-06 19 9067679 9067679 G A MUC16 Silent p.S6589S 0.29 TCGA-FW-A3R5-06 19 9068061 9068061 C T MUC16 Nonsense_Mutation p.W6462* 0.27 TCGA-FW-A3R5-06 19 9069056 9069056 G A MUC16 Silent p.S6130S 0.17 TCGA-FW-A3R5-06 19 9069180 9069180 G A MUC16 Missense_Mutation p.S6089L 0.33 unknown(0) TCGA-FW-A3R5-06 19 9069366 9069366 G A MUC16 Missense_Mutation p.S6027F 0.34 unknown(0) TCGA-FW-A3R5-06 19 9069622 9069622 G A MUC16 Missense_Mutation p.L5942F 0.22 unknown(0) TCGA-FW-A3R5-06 19 9069754 9069754 G A MUC16 Missense_Mutation p.P5898S 0.21 unknown(0) TCGA-FW-A3R5-06 19 9069821 9069821 G A MUC16 Silent p.T5875T 0.27 TCGA-FW-A3R5-06 19 9070072 9070072 C T MUC16 Missense_Mutation p.E5792K 0.31 unknown(0) TCGA-FW-A3R5-06 19 9070073 9070073 C T MUC16 Silent p.E5791E 0.32 TCGA-FW-A3R5-06 19 9070255 9070255 C T MUC16 Missense_Mutation p.E5731K 0.28 unknown(0) TCGA-FW-A3R5-06 19 9070360 9070360 C T MUC16 Missense_Mutation p.E5696K 0.27 unknown(0) TCGA-FW-A3R5-06 19 9070509 9070509 G A MUC16 Missense_Mutation p.S5646F 0.36 unknown(0) TCGA-FW-A3R5-06 19 9070533 9070533 G A MUC16 Missense_Mutation p.S5638F 0.47 unknown(0) TCGA-FW-A3R5-06 19 9071252 9071252 G A MUC16 Silent p.I5398I 0.30 TCGA-FW-A3R5-06 19 9071513 9071513 G A MUC16 Silent p.T5311T 0.16 TCGA-FW-A3R5-06 19 9071765 9071765 G A MUC16 Silent p.V5227V 0.12 TCGA-FW-A3R5-06 19 9071953 9071953 G A MUC16 Missense_Mutation p.P5165S 0.22 unknown(0) TCGA-FW-A3R5-06 19 9072087 9072087 G A MUC16 Missense_Mutation p.S5120F 0.30 unknown(0) TCGA-FW-A3R5-06 19 9072128 9072128 G A MUC16 Silent p.A5106A 0.31 TCGA-FW-A3R5-06 19 9072407 9072407 C T MUC16 Silent p.L5013L 0.26 TCGA-FW-A3R5-06 19 9072414 9072414 G A MUC16 Missense_Mutation p.S5011L 0.11 unknown(0) TCGA-FW-A3R5-06 19 9073561 9073561 C T MUC16 Missense_Mutation p.A4629T 0.21 unknown(0) TCGA-FW-A3R5-06 19 9073562 9073562 C T MUC16 Silent p.G4628G 0.22 TCGA-FW-A3R5-06 19 9073656 9073656 G A MUC16 Missense_Mutation p.S4597F 0.33 unknown(0) TCGA-FW-A3R5-06 19 9073721 9073721 C T MUC16 Silent p.G4575G 0.23 TCGA-FW-A3R5-06 19 9074222 9074222 G A MUC16 Silent p.T4408T 0.22 TCGA-FW-A3R5-06 19 9074263 9074263 C T MUC16 Missense_Mutation p.G4395R 0.31 unknown(0) TCGA-FW-A3R5-06 19 9074867 9074867 G A MUC16 Silent p.F4193F 0.24 TCGA-FW-A3R5-06 19 9074991 9074991 G A MUC16 Missense_Mutation p.S4152F 0.07 unknown(0) TCGA-FW-A3R5-06 19 9075173 9075173 C T MUC16 Missense_Mutation p.M4091I 0.30 unknown(0) TCGA-FW-A3R5-06 19 9075287 9075287 G A MUC16 Silent p.S4053S 0.23 TCGA-FW-A3R5-06 19 9075383 9075383 G A MUC16 Silent p.S4021S 0.22 TCGA-FW-A3R5-06 19 9075484 9075484 C T MUC16 Missense_Mutation p.E3988K 0.29 unknown(0) TCGA-FW-A3R5-06 19 9076249 9076249 G A MUC16 Silent p.L3733L 0.23 TCGA-FW-A3R5-06 19 9076250 9076250 A T MUC16 Silent p.S3732S 0.24 TCGA-FW-A3R5-06 19 9076695 9076695 G A MUC16 Missense_Mutation p.S3584F 0.28 unknown(0) TCGA-FW-A3R5-06 19 9077159 9077159 C T MUC16 Nonsense_Mutation p.W3429* 0.34 TCGA-FW-A3R5-06 19 9077764 9077764 G A MUC16 Missense_Mutation p.P3228S 0.22 unknown(0) TCGA-FW-A3R5-06 19 9082364 9082364 G A MUC16 Missense_Mutation p.P3151S 0.26 unknown(0) TCGA-FW-A3R5-06 19 9082505 9082505 C T MUC16 Missense_Mutation p.E3104K 0.28 unknown(0) TCGA-FW-A3R5-06 19 9082626 9082626 C T MUC16 Silent p.R3063R 0.26 TCGA-FW-A3R5-06 19 9082977 9082977 C T MUC16 Silent p.K2946K 0.25 TCGA-FW-A3R5-06 19 9083067 9083067 G A MUC16 Silent p.T2916T 0.27 TCGA-FW-A3R5-06 19 9083611 9083611 G A MUC16 Missense_Mutation p.P2735L 0.32 unknown(0) TCGA-FW-A3R5-06 19 9083644 9083644 G A MUC16 Missense_Mutation p.P2724L 0.23 unknown(0) TCGA-FW-A3R5-06 19 9084263 9084263 C T MUC16 Missense_Mutation p.G2518S 0.26 unknown(0) TCGA-FW-A3R5-06 19 9084500 9084500 C T MUC16 Missense_Mutation p.G2439R 0.09 unknown(0) TCGA-FW-A3R5-06 19 9084665 9084665 C T MUC16 Missense_Mutation p.D2384N 0.36 unknown(0) TCGA-FW-A3R5-06 19 9085498 9085498 G A MUC16 Missense_Mutation p.P2106L 0.23 unknown(0) TCGA-FW-A3R5-06 19 9085504 9085504 C T MUC16 Missense_Mutation p.R2104K 0.23 unknown(0) TCGA-FW-A3R5-06 19 9085580 9085580 C T MUC16 Missense_Mutation p.G2079R 0.33 unknown(0) TCGA-FW-A3R5-06 19 9085734 9085734 G A MUC16 Silent p.S2027S 0.18 TCGA-FW-A3R5-06 19 9085995 9085995 G A MUC16 Silent p.S1940S 0.26 TCGA-FW-A3R5-06 19 9086464 9086464 G A MUC16 Missense_Mutation p.S1784F 0.36 unknown(0) TCGA-FW-A3R5-06 19 9086960 9086960 C T MUC16 Missense_Mutation p.E1619K 0.28 unknown(0) TCGA-FW-A3R5-06 19 9087344 9087344 G A MUC16 Missense_Mutation p.P1491S 0.08 unknown(0) TCGA-FW-A3R5-06 19 9087697 9087697 G A MUC16 Missense_Mutation p.S1373L 0.33 unknown(0) TCGA-FW-A3R5-06 19 9087887 9087887 G A MUC16 Missense_Mutation p.P1310S 0.26 unknown(0) TCGA-FW-A3R5-06 19 9088430 9088430 G A MUC16 Silent p.L1129L 0.25 TCGA-FW-A3R5-06 19 9088726 9088726 G A MUC16 Missense_Mutation p.P1030L 0.31 unknown(0) TCGA-FW-A3R5-06 19 9088839 9088839 G A MUC16 Silent p.L992L 0.25 TCGA-FW-A3R5-06 19 9089883 9089883 C T MUC16 Silent p.T644T 0.25 TCGA-FW-A3R5-06 19 9089917 9089917 G A MUC16 Missense_Mutation p.S633L 0.21 unknown(0) TCGA-FW-A3R5-06 19 9090556 9090556 G A MUC16 Missense_Mutation p.T420I 0.27 unknown(0) TCGA-FW-A3R5-06 19 9090630 9090630 G A MUC16 Silent p.T395T 0.18 TCGA-FW-A3R5-06 19 9091388 9091388 C T MUC16 Missense_Mutation p.E143K 0.35 unknown(0) TCGA-FW-A3R5-06 19 9091556 9091556 G A MUC16 Missense_Mutation p.P87S 0.33 unknown(0) TCGA-FW-A3R5-06 19 9091567 9091567 G A MUC16 Missense_Mutation p.S83F 0.26 unknown(0) TCGA-FW-A3R5-06 19 9204043 9204043 G A OR1M1 Silent p.G41G 0.28 TCGA-FW-A3R5-06 19 9204289 9204289 C T OR1M1 Silent p.F123F 0.32 TCGA-FW-A3R5-06 19 9204490 9204490 G A OR1M1 Silent p.T190T 0.30 TCGA-FW-A3R5-06 19 9213014 9213014 C T OR7G2 Silent p.R323R 0.25 TCGA-FW-A3R5-06 19 9213419 9213419 G A OR7G2 Silent p.S188S 0.35 TCGA-FW-A3R5-06 19 9225552 9225552 C T OR7G1 Silent p.E296E 0.28 TCGA-FW-A3R5-06 19 9237432 9237432 G A OR7G3 Silent p.I65I 0.33 TCGA-FW-A3R5-06 19 9271434 9271434 C T ZNF317 Silent p.F371F 0.24 TCGA-FW-A3R5-06 19 9296535 9296535 C T OR7D2 Silent p.F26F 0.34 TCGA-FW-A3R5-06 19 9324768 9324768 G A OR7D4 Missense_Mutation p.S249F 0.29 tolerated(0.08) benign(0.05) TCGA-FW-A3R5-06 19 9324872 9324872 G A OR7D4 Silent p.I214I 0.25 TCGA-FW-A3R5-06 19 9361945 9361945 C T OR7E24 Missense_Mutation p.P76S 0.22 deleterious(0.02) possibly_damaging(0.601) TCGA-FW-A3R5-06 19 9362178 9362178 C T OR7E24 Silent p.I153I 0.25 TCGA-FW-A3R5-06 19 9408050 9408050 G A ZNF699 Missense_Mutation p.S131F 0.43 tolerated(0.13) possibly_damaging(0.768) TCGA-FW-A3R5-06 19 9449179 9449179 C T ZNF559 5'UTR 0.35 TCGA-FW-A3R5-06 19 9529297 9529297 G A ZNF266 5'UTR 0.28 TCGA-FW-A3R5-06 19 9577235 9577235 C T ZNF560 3'UTR 0.25 TCGA-FW-A3R5-06 19 9577519 9577519 G A ZNF560 Missense_Mutation p.R702C 0.25 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 19 9577743 9577743 G A ZNF560 Missense_Mutation p.P627L 0.28 deleterious(0.04) probably_damaging(0.929) TCGA-FW-A3R5-06 19 9577764 9577764 C T ZNF560 Missense_Mutation p.R620Q 0.28 deleterious(0.01) possibly_damaging(0.602) TCGA-FW-A3R5-06 19 9577796 9577796 G A ZNF560 Silent p.F609F 0.24 TCGA-FW-A3R5-06 19 9578102 9578102 C T ZNF560 Silent p.L507L 0.29 TCGA-FW-A3R5-06 19 9578782 9578782 G A ZNF560 Nonsense_Mutation p.Q281* 0.28 TCGA-FW-A3R5-06 19 9581067 9581067 C T ZNF560 Splice_Site p.X150_splice 0.17 TCGA-FW-A3R5-06 19 9677162 9677162 G A ZNF121 Silent p.F209F 0.33 TCGA-FW-A3R5-06 19 9801459 9801459 C T ZNF812 Silent p.V240V 0.32 TCGA-FW-A3R5-06 19 9801565 9801565 G A ZNF812 Missense_Mutation p.S205F 0.39 tolerated(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 19 9806893 9806893 C T ZNF812 5'UTR 0.15 TCGA-FW-A3R5-06 19 9806894 9806894 C T ZNF812 5'UTR 0.14 TCGA-FW-A3R5-06 19 990989 990989 C T WDR18 Silent p.F245F 0.28 TCGA-FW-A3R5-06 19 9921544 9921544 G A FBXL12 3'UTR 0.33 TCGA-FW-A3R5-06 19 9922101 9922101 G A FBXL12 Missense_Mutation p.P151L 0.24 tolerated(0.11) possibly_damaging(0.496) TCGA-FW-A3R5-06 19 9971349 9971349 C T OLFM2 Missense_Mutation p.S62N 0.21 deleterious(0.03) possibly_damaging(0.809) TCGA-FW-A3R5-06 1 100111804 100111804 C T PALMD 5'UTR 0.31 TCGA-FW-A3R5-06 1 100154749 100154749 G A PALMD Silent p.E311E 0.16 TCGA-FW-A3R5-06 1 100155173 100155173 G A PALMD Missense_Mutation p.E453K 0.27 deleterious(0.03) possibly_damaging(0.715) TCGA-FW-A3R5-06 1 100155313 100155313 C T PALMD Silent p.P499P 0.27 TCGA-FW-A3R5-06 1 100155362 100155362 C T PALMD Missense_Mutation p.P516S 0.25 tolerated(0.28) benign(0.064) TCGA-FW-A3R5-06 1 100182983 100182983 C T FRRS1 Missense_Mutation p.E407K 0.24 tolerated(0.94) benign(0.007) TCGA-FW-A3R5-06 1 100330033 100330033 C T AGL Silent p.D184D 0.18 TCGA-FW-A3R5-06 1 100330034 100330034 T C AGL Missense_Mutation p.F185L 0.18 deleterious(0) benign(0.302) TCGA-FW-A3R5-06 1 10042714 10042714 C T NMNAT1 Silent p.V265V 0.37 TCGA-FW-A3R5-06 1 100598412 100598412 G A SASS6 5'UTR 0.27 TCGA-FW-A3R5-06 1 100620727 100620727 C T LRRC39 Missense_Mutation p.R231Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 100672014 100672014 G A DBT Missense_Mutation p.S399F 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 101190431 101190431 G A VCAM1 Missense_Mutation p.E305K 0.14 tolerated(0.15) benign(0.018) TCGA-FW-A3R5-06 1 101194818 101194818 G A VCAM1 Missense_Mutation p.E362K 0.29 tolerated(0.23) benign(0.041) TCGA-FW-A3R5-06 1 101198189 101198189 G A VCAM1 Missense_Mutation p.G581R 0.28 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 1 10155574 10155574 C T UBE4B Silent p.P89P 0.07 TCGA-FW-A3R5-06 1 101705633 101705633 G A S1PR1 Missense_Mutation p.E365K 0.25 tolerated(0.24) benign(0.001) TCGA-FW-A3R5-06 1 102270432 102270432 G A OLFM3 Missense_Mutation p.R247C 0.30 deleterious(0.03) possibly_damaging(0.88) TCGA-FW-A3R5-06 1 10228227 10228227 C T UBE4B Nonsense_Mutation p.Q1078* 0.24 TCGA-FW-A3R5-06 1 102290667 102290667 C T OLFM3 Silent p.E169E 0.13 TCGA-FW-A3R5-06 1 102302440 102302440 C T OLFM3 Missense_Mutation p.E71K 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 1 10231363 10231363 C T UBE4B Silent p.F1167F 0.30 TCGA-FW-A3R5-06 1 103343647 103343647 G A COL11A1 Silent p.V1783V 0.35 TCGA-FW-A3R5-06 1 103352543 103352543 C T COL11A1 Missense_Mutation p.G1560S 0.27 unknown(0) TCGA-FW-A3R5-06 1 103377716 103377716 C T COL11A1 Missense_Mutation p.R1362Q 0.24 unknown(0) TCGA-FW-A3R5-06 1 103400011 103400011 A T COL11A1 Silent p.G1198G 0.19 TCGA-FW-A3R5-06 1 103400012 103400012 C A COL11A1 Missense_Mutation p.G1198V 0.17 unknown(0) TCGA-FW-A3R5-06 1 103427784 103427784 C T COL11A1 Missense_Mutation p.G1021E 0.14 unknown(0) TCGA-FW-A3R5-06 1 103427792 103427792 C T COL11A1 Silent p.G1018G 0.34 TCGA-FW-A3R5-06 1 103444462 103444462 C T COL11A1 Missense_Mutation p.R888Q 0.21 unknown(0) TCGA-FW-A3R5-06 1 103444967 103444967 G A COL11A1 Missense_Mutation p.P861S 0.31 unknown(0) TCGA-FW-A3R5-06 1 103467999 103467999 C T COL11A1 Silent p.G694G 0.33 TCGA-FW-A3R5-06 1 103471420 103471420 C T COL11A1 Missense_Mutation p.G607S 0.15 unknown(0) TCGA-FW-A3R5-06 1 103471421 103471421 C T COL11A1 Silent p.P606P 0.14 TCGA-FW-A3R5-06 1 103474059 103474059 G A COL11A1 Missense_Mutation p.S548L 0.35 unknown(0) TCGA-FW-A3R5-06 1 103488537 103488537 C T COL11A1 Missense_Mutation p.E336K 0.26 possibly_damaging(0.884) TCGA-FW-A3R5-06 1 103573705 103573705 C T COL11A1 Silent p.T10T 0.28 TCGA-FW-A3R5-06 1 10363559 10363559 C T KIF1B Intron 0.33 TCGA-FW-A3R5-06 1 104112870 104112870 C T AMY2B Intron 0.40 TCGA-FW-A3R5-06 1 104160591 104160591 G A AMY2A Missense_Mutation p.E62K 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 1 104162381 104162381 G A AMY2A Missense_Mutation p.G240E 0.21 deleterious(0.01) benign(0.258) TCGA-FW-A3R5-06 1 104203036 104203036 G A AMY1A Silent p.V311V 0.17 TCGA-FW-A3R5-06 1 10425540 10425540 C T KIF1B Missense_Mutation p.S1483L 0.08 tolerated(0.24) benign(0.003) TCGA-FW-A3R5-06 1 104297425 104297425 G A AMY1C Missense_Mutation p.E364K 0.19 tolerated(0.55) benign(0.001) TCGA-FW-A3R5-06 1 10477453 10477453 C T PGD Silent p.I332I 0.27 TCGA-FW-A3R5-06 1 10479767 10479767 C T PGD Silent p.G471G 0.11 TCGA-FW-A3R5-06 1 10689751 10689751 C T PEX14 Missense_Mutation p.H281Y 0.29 tolerated(0.09) possibly_damaging(0.624) TCGA-FW-A3R5-06 1 10713796 10713796 G A CASZ1 Missense_Mutation p.S773L 0.34 tolerated_low_confidence(0.1) possibly_damaging(0.574) TCGA-FW-A3R5-06 1 107979316 107979316 C T NTNG1 Missense_Mutation p.H429Y 0.33 tolerated(0.3) benign(0) TCGA-FW-A3R5-06 1 108313328 108313328 C T VAV3 Missense_Mutation p.R193Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 1 108735132 108735132 G A SLC25A24 Intron 0.31 TCGA-FW-A3R5-06 1 109271289 109271289 G A FNDC7 Missense_Mutation p.D469N 0.26 tolerated(0.35) benign(0.008) TCGA-FW-A3R5-06 1 109271457 109271457 G A FNDC7 Missense_Mutation p.E525K 0.32 tolerated(0.76) benign(0.014) TCGA-FW-A3R5-06 1 109284406 109284406 G A FNDC7 Missense_Mutation p.G728R 0.21 deleterious(0.04) possibly_damaging(0.864) TCGA-FW-A3R5-06 1 109302685 109302685 C T STXBP3 Missense_Mutation p.S139F 0.27 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 1 109377600 109377600 C T AKNAD1 Missense_Mutation p.G539R 0.28 tolerated(0.5) benign(0.162) TCGA-FW-A3R5-06 1 109529264 109529264 G A WDR47 Silent p.I610I 0.31 TCGA-FW-A3R5-06 1 109538218 109538218 G A WDR47 Missense_Mutation p.P567S 0.24 tolerated(0.13) benign(0.23) TCGA-FW-A3R5-06 1 109649166 109649166 C T C1orf194 Missense_Mutation p.G132R 0.27 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 1 109730818 109730818 G A KIAA1324 Nonsense_Mutation p.W354* 0.25 TCGA-FW-A3R5-06 1 109740600 109740600 G A KIAA1324 Splice_Site p.X768_splice 0.29 TCGA-FW-A3R5-06 1 109801498 109801498 C T CELSR2 Missense_Mutation p.S1252F 0.17 deleterious(0.04) probably_damaging(0.968) TCGA-FW-A3R5-06 1 109807823 109807823 C T CELSR2 Missense_Mutation p.P1873S 0.08 deleterious(0.05) benign(0.403) TCGA-FW-A3R5-06 1 109840226 109840226 G A MYBPHL Missense_Mutation p.P83L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 109840830 109840830 C G MYBPHL Silent p.R65R 0.15 TCGA-FW-A3R5-06 1 109840831 109840831 C T MYBPHL Missense_Mutation p.R65Q 0.15 deleterious(0.04) benign(0.034) TCGA-FW-A3R5-06 1 110018217 110018217 C T SYPL2 Silent p.F48F 0.25 TCGA-FW-A3R5-06 1 110018223 110018223 C T SYPL2 Silent p.F50F 0.16 TCGA-FW-A3R5-06 1 110019517 110019517 C T SYPL2 Missense_Mutation p.S125F 0.29 deleterious(0) probably_damaging(0.913) TCGA-FW-A3R5-06 1 110031617 110031617 C T ATXN7L2 Missense_Mutation p.S311F 0.25 deleterious(0.04) benign(0.008) TCGA-FW-A3R5-06 1 110032729 110032729 C T ATXN7L2 Silent p.T405T 0.23 TCGA-FW-A3R5-06 1 110038505 110038505 C T CYB561D1 Missense_Mutation p.A127V 0.29 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 1 110051073 110051073 G A AMIGO1 Silent p.F154F 0.24 TCGA-FW-A3R5-06 1 11007806 11007806 G A C1orf127 Missense_Mutation p.P796S 0.27 tolerated(0.34) benign(0.199) TCGA-FW-A3R5-06 1 11008269 11008269 C T C1orf127 Missense_Mutation p.M641I 0.08 deleterious(0.05) benign(0.004) TCGA-FW-A3R5-06 1 11008349 11008349 C T C1orf127 Missense_Mutation p.E615K 0.28 tolerated(0.05) probably_damaging(0.981) TCGA-FW-A3R5-06 1 110086372 110086372 G A GPR61 Missense_Mutation p.G243E 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 1 110148694 110148694 G T GNAT2 Silent p.S206S 0.32 TCGA-FW-A3R5-06 1 110155529 110155529 C T GNAT2 5'UTR 0.27 TCGA-FW-A3R5-06 1 110163726 110163726 T C AMPD2 Silent p.L31L 0.20 TCGA-FW-A3R5-06 1 110168355 110168355 C T AMPD2 Silent p.P152P 0.21 TCGA-FW-A3R5-06 1 110230845 110230845 A T GSTM1 Missense_Mutation p.E30D 0.54 tolerated(0.38) benign(0.035) TCGA-FW-A3R5-06 1 110254965 110254965 C T GSTM5 Missense_Mutation p.R11C 0.08 deleterious(0.04) probably_damaging(0.99) TCGA-FW-A3R5-06 1 110256060 110256060 G A GSTM5 Intron 0.24 TCGA-FW-A3R5-06 1 110259838 110259838 C T GSTM5 Intron 0.24 TCGA-FW-A3R5-06 1 110280755 110280755 A T GSTM3 Missense_Mutation p.D110E 0.33 deleterious(0) possibly_damaging(0.703) TCGA-FW-A3R5-06 1 110295781 110295781 G A EPS8L3 Silent p.P387P 0.12 TCGA-FW-A3R5-06 1 110301041 110301041 G A EPS8L3 Missense_Mutation p.S206F 0.07 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 1 110465872 110465872 C T CSF1 Missense_Mutation p.P210L 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-FW-A3R5-06 1 110466201 110466201 G A CSF1 Missense_Mutation p.G320R 0.33 deleterious(0.03) probably_damaging(0.941) TCGA-FW-A3R5-06 1 110466714 110466714 C T CSF1 Missense_Mutation p.P491S 0.34 tolerated(0.06) possibly_damaging(0.644) TCGA-FW-A3R5-06 1 110596312 110596312 C T STRIP1 Silent p.F764F 0.41 TCGA-FW-A3R5-06 1 110612973 110612973 C T ALX3 Missense_Mutation p.E88K 0.17 deleterious_low_confidence(0.02) benign(0.01) TCGA-FW-A3R5-06 1 110655414 110655414 G A UBL4B Silent p.Q86Q 0.15 TCGA-FW-A3R5-06 1 110714804 110714804 C T SLC6A17 Missense_Mutation p.P137S 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 110717531 110717531 C T SLC6A17 Silent p.A234A 0.32 TCGA-FW-A3R5-06 1 110737331 110737331 C T SLC6A17 Missense_Mutation p.T477I 0.19 tolerated(0.42) possibly_damaging(0.853) TCGA-FW-A3R5-06 1 110740790 110740790 C T SLC6A17 Silent p.F636F 0.28 TCGA-FW-A3R5-06 1 110754499 110754499 C T KCNC4 Silent p.F126F 0.10 TCGA-FW-A3R5-06 1 110754783 110754783 C T KCNC4 Missense_Mutation p.S221F 0.33 deleterious(0) possibly_damaging(0.768) TCGA-FW-A3R5-06 1 110765834 110765834 C T KCNC4 Silent p.F309F 0.23 TCGA-FW-A3R5-06 1 110882722 110882722 A G RBM15 Missense_Mutation p.K232R 0.29 tolerated(0.48) probably_damaging(0.996) TCGA-FW-A3R5-06 1 110998924 110998924 C T PROK1 Missense_Mutation p.P90L 0.29 tolerated(0.59) benign(0.001) TCGA-FW-A3R5-06 1 11102947 11102947 G A MASP2 Missense_Mutation p.H292Y 0.31 tolerated(0.06) possibly_damaging(0.496) TCGA-FW-A3R5-06 1 111060399 111060399 C T KCNA10 Silent p.L337L 0.23 TCGA-FW-A3R5-06 1 111060798 111060798 G A KCNA10 Silent p.L204L 0.26 TCGA-FW-A3R5-06 1 111061284 111061284 C T KCNA10 Silent p.G42G 0.32 TCGA-FW-A3R5-06 1 111145995 111145995 C T KCNA2 Silent p.E470E 0.13 TCGA-FW-A3R5-06 1 111146191 111146191 G A KCNA2 Missense_Mutation p.P405L 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 111147525 111147525 G A KCNA2 5'UTR 0.36 TCGA-FW-A3R5-06 1 111147534 111147534 G A KCNA2 5'UTR 0.30 TCGA-FW-A3R5-06 1 111215516 111215516 G A KCNA3 3'UTR 0.36 TCGA-FW-A3R5-06 1 111215776 111215776 G A KCNA3 Silent p.S552S 0.23 TCGA-FW-A3R5-06 1 111216202 111216202 G A KCNA3 Silent p.I410I 0.23 TCGA-FW-A3R5-06 1 111494481 111494481 G A LRIF1 Missense_Mutation p.P342L 0.23 deleterious(0) benign(0.373) TCGA-FW-A3R5-06 1 11150690 11150690 G A EXOSC10 Missense_Mutation p.R227C 0.31 deleterious(0) possibly_damaging(0.886) TCGA-FW-A3R5-06 1 1115683 1115683 C T TTLL10 Missense_Mutation p.P157S 0.22 deleterious(0) possibly_damaging(0.831) TCGA-FW-A3R5-06 1 1116178 1116178 C T TTLL10 Silent p.T231T 0.38 TCGA-FW-A3R5-06 1 111724867 111724867 C T CEPT1 Missense_Mutation p.T258I 0.27 deleterious(0.03) benign(0.087) TCGA-FW-A3R5-06 1 111741362 111741362 C T DENND2D Silent p.R82R 0.22 TCGA-FW-A3R5-06 1 11177099 11177099 G A MTOR Silent p.V2326V 0.28 TCGA-FW-A3R5-06 1 111781455 111781455 C T CHI3L2 Silent p.F273F 0.27 TCGA-FW-A3R5-06 1 111826767 111826767 T G CHIAP2 RNA 0.28 TCGA-FW-A3R5-06 1 111827633 111827633 G A CHIAP2 RNA 0.33 TCGA-FW-A3R5-06 1 111854894 111854894 C T CHIA Silent p.I46I 0.30 TCGA-FW-A3R5-06 1 111861250 111861250 G A CHIA Missense_Mutation p.G289S 0.36 deleterious(0) probably_damaging(0.913) TCGA-FW-A3R5-06 1 111861848 111861848 G A CHIA Missense_Mutation p.S341N 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 11186751 11186751 G A MTOR Missense_Mutation p.R2152C 0.31 tolerated(0.11) benign(0.004) TCGA-FW-A3R5-06 1 111889590 111889590 C T PIFO Silent p.F26F 0.24 TCGA-FW-A3R5-06 1 111889591 111889591 C T PIFO Missense_Mutation p.H27Y 0.25 tolerated(0.26) benign(0.011) TCGA-FW-A3R5-06 1 11189841 11189841 G A MTOR Missense_Mutation p.R1890C 0.14 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 1 1119445 1119445 G A TTLL10 Missense_Mutation p.D412N 0.22 tolerated(0.12) probably_damaging(0.954) TCGA-FW-A3R5-06 1 111957054 111957054 G A OVGP1 3'UTR 0.23 TCGA-FW-A3R5-06 1 111957659 111957659 G A OVGP1 Silent p.T488T 0.17 TCGA-FW-A3R5-06 1 111957747 111957747 G A OVGP1 Missense_Mutation p.S459F 0.27 deleterious_low_confidence(0.03) benign(0.035) TCGA-FW-A3R5-06 1 111964021 111964021 G A OVGP1 Silent p.I260I 0.23 TCGA-FW-A3R5-06 1 111964046 111964046 G A OVGP1 Missense_Mutation p.P252L 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3R5-06 1 111965556 111965556 G A OVGP1 Silent p.L201L 0.32 TCGA-FW-A3R5-06 1 111966270 111966270 G A OVGP1 Silent p.S126S 0.40 TCGA-FW-A3R5-06 1 111969148 111969148 G A OVGP1 Silent p.A57A 0.16 TCGA-FW-A3R5-06 1 111983920 111983920 G A WDR77 Nonsense_Mutation p.Q321* 0.32 TCGA-FW-A3R5-06 1 11199665 11199665 G A MTOR Silent p.S1641S 0.28 TCGA-FW-A3R5-06 1 111996918 111996918 C T ATP5F1 Missense_Mutation p.R55C 0.34 deleterious(0.03) benign(0.028) TCGA-FW-A3R5-06 1 112031331 112031331 C T ADORA3 Missense_Mutation p.G258E 0.15 tolerated_low_confidence(0.42) benign(0.002) TCGA-FW-A3R5-06 1 112042662 112042662 G A ADORA3 Intron 0.34 TCGA-FW-A3R5-06 1 112043097 112043097 G A ADORA3 Intron 0.28 TCGA-FW-A3R5-06 1 11204731 11204731 G A MTOR Missense_Mutation p.R1616C 0.27 deleterious(0) possibly_damaging(0.828) TCGA-FW-A3R5-06 1 112305305 112305305 C T DDX20 Missense_Mutation p.R371C 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 112524985 112524985 C T KCND3 Missense_Mutation p.G122S 0.11 deleterious(0.01) possibly_damaging(0.908) TCGA-FW-A3R5-06 1 112525033 112525033 G A KCND3 Missense_Mutation p.P106S 0.32 tolerated(0.08) possibly_damaging(0.875) TCGA-FW-A3R5-06 1 112525239 112525239 C T KCND3 Missense_Mutation p.R37Q 0.17 tolerated(0.13) benign(0.001) TCGA-FW-A3R5-06 1 112525412 112525412 C T KCND3 5'UTR 0.70 TCGA-FW-A3R5-06 1 11253760 11253760 G A ANGPTL7 Missense_Mutation p.D201N 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 112958820 112958820 C T CTTNBP2NL Silent p.L11L 0.23 TCGA-FW-A3R5-06 1 112999795 112999795 C T CTTNBP2NL Missense_Mutation p.P561S 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 1 112999796 112999796 C T CTTNBP2NL Missense_Mutation p.P561L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 113059742 113059742 G C WNT2B Splice_Site p.X228_splice 0.20 TCGA-FW-A3R5-06 1 113084621 113084621 G A ST7L Silent p.A527A 0.25 TCGA-FW-A3R5-06 1 113231507 113231507 C T MOV10 Intron 0.31 TCGA-FW-A3R5-06 1 113231680 113231680 C T MOV10 Silent p.F87F 0.33 TCGA-FW-A3R5-06 1 113234340 113234340 C T MOV10 Missense_Mutation p.P297L 0.26 deleterious(0.04) possibly_damaging(0.566) TCGA-FW-A3R5-06 1 113235516 113235516 C T MOV10 Missense_Mutation p.P369S 0.28 tolerated(0.06) benign(0.006) TCGA-FW-A3R5-06 1 113269313 113269313 G A FAM19A3 3'UTR 0.30 TCGA-FW-A3R5-06 1 113460565 113460565 G A SLC16A1 Missense_Mutation p.P155S 0.24 deleterious(0.05) probably_damaging(0.98) TCGA-FW-A3R5-06 1 113638980 113638980 C T LRIG2 Nonsense_Mutation p.Q362* 0.28 TCGA-FW-A3R5-06 1 1139810 1139810 C T TNFRSF18 Missense_Mutation p.G123S 0.33 tolerated_low_confidence(0.05) probably_damaging(0.958) TCGA-FW-A3R5-06 1 114186370 114186370 C T MAGI3 Missense_Mutation p.P658S 0.26 tolerated(0.43) benign(0.012) TCGA-FW-A3R5-06 1 114196635 114196635 C T MAGI3 Missense_Mutation p.P875L 0.21 deleterious(0.05) probably_damaging(0.988) TCGA-FW-A3R5-06 1 114357420 114357420 C T PTPN22 3'UTR 0.27 TCGA-FW-A3R5-06 1 114380964 114380964 G A PTPN22 Missense_Mutation p.S353F 0.29 tolerated(0.19) benign(0.042) TCGA-FW-A3R5-06 1 114424416 114424416 G A BCL2L15 Silent p.F151F 0.18 TCGA-FW-A3R5-06 1 114450762 114450762 C T DCLRE1B Missense_Mutation p.H163Y 0.25 deleterious(0.02) benign(0.317) TCGA-FW-A3R5-06 1 114523091 114523091 C T OLFML3 Silent p.S84S 0.14 TCGA-FW-A3R5-06 1 114523291 114523291 C T OLFML3 Intron 0.21 TCGA-FW-A3R5-06 1 114636424 114636424 C T SYT6 Missense_Mutation p.G421E 0.08 tolerated_low_confidence(0.11) benign(0.006) TCGA-FW-A3R5-06 1 114641717 114641717 G A SYT6 Nonsense_Mutation p.R370* 0.32 TCGA-FW-A3R5-06 1 114680148 114680148 G A SYT6 Missense_Mutation p.S262F 0.33 tolerated(0.3) possibly_damaging(0.635) TCGA-FW-A3R5-06 1 114680293 114680293 G A SYT6 Missense_Mutation p.H214Y 0.32 tolerated(1) possibly_damaging(0.729) TCGA-FW-A3R5-06 1 1147102 1147102 C T TNFRSF4 Missense_Mutation p.D249N 0.50 tolerated(0.74) benign(0.001) TCGA-FW-A3R5-06 1 1149139 1149139 G A TNFRSF4 Missense_Mutation p.R58C 0.32 tolerated(0.06) possibly_damaging(0.667) TCGA-FW-A3R5-06 1 115128143 115128143 C T DENND2C 3'UTR 0.30 TCGA-FW-A3R5-06 1 115130449 115130449 G A DENND2C Silent p.F852F 0.25 TCGA-FW-A3R5-06 1 115143510 115143510 C T DENND2C Missense_Mutation p.M629I 0.32 deleterious(0.01) benign(0.069) TCGA-FW-A3R5-06 1 115161063 115161063 C T DENND2C Missense_Mutation p.G423E 0.22 deleterious(0) possibly_damaging(0.589) TCGA-FW-A3R5-06 1 115168320 115168320 C T DENND2C Missense_Mutation p.E96K 0.25 tolerated(0.44) benign(0.027) TCGA-FW-A3R5-06 1 115220557 115220557 C T AMPD1 Missense_Mutation p.G433R 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 115221019 115221019 C T AMPD1 Missense_Mutation p.E376K 0.29 deleterious(0.03) benign(0.174) TCGA-FW-A3R5-06 1 115226835 115226835 C T AMPD1 Missense_Mutation p.E211K 0.37 tolerated(0.1) benign(0.284) TCGA-FW-A3R5-06 1 115238117 115238117 G A AMPD1 Silent p.I25I 0.22 TCGA-FW-A3R5-06 1 115399878 115399878 C T SYCP1 Silent p.F73F 0.21 TCGA-FW-A3R5-06 1 115428861 115428861 C T SYCP1 Missense_Mutation p.S374L 0.32 deleterious(0.01) benign(0.069) TCGA-FW-A3R5-06 1 115453026 115453026 G A SYCP1 Silent p.K443K 0.12 TCGA-FW-A3R5-06 1 115454199 115454199 G A SYCP1 Missense_Mutation p.E509K 0.30 deleterious(0.02) benign(0.384) TCGA-FW-A3R5-06 1 115456614 115456614 G A SYCP1 Missense_Mutation p.E556K 0.28 deleterious(0.04) benign(0.441) TCGA-FW-A3R5-06 1 115487056 115487056 G A SYCP1 Missense_Mutation p.E675K 0.19 deleterious(0.01) probably_damaging(0.917) TCGA-FW-A3R5-06 1 115576077 115576077 G A TSHB Missense_Mutation p.E32K 0.23 deleterious(0) possibly_damaging(0.705) TCGA-FW-A3R5-06 1 11562736 11562736 C G PTCHD2 Silent p.G366G 0.40 TCGA-FW-A3R5-06 1 11580895 11580895 C T PTCHD2 Silent p.I784I 0.44 TCGA-FW-A3R5-06 1 115828674 115828674 G A NGF 3'UTR 0.28 TCGA-FW-A3R5-06 1 115829395 115829395 G A NGF Silent p.L8L 0.29 TCGA-FW-A3R5-06 1 11584065 11584065 G A PTCHD2 Missense_Mutation p.R810Q 0.10 tolerated(0.13) benign(0.401) TCGA-FW-A3R5-06 1 11589616 11589616 G A PTCHD2 Silent p.K934K 0.32 TCGA-FW-A3R5-06 1 11596488 11596488 C T PTCHD2 Silent p.F1308F 0.27 TCGA-FW-A3R5-06 1 11596500 11596500 C T PTCHD2 Silent p.I1312I 0.27 TCGA-FW-A3R5-06 1 116243758 116243758 G A CASQ2 3'UTR 0.24 TCGA-FW-A3R5-06 1 116311050 116311050 G A CASQ2 Missense_Mutation p.S38F 0.60 deleterious(0) possibly_damaging(0.786) TCGA-FW-A3R5-06 1 116311118 116311118 G A CASQ2 Silent p.S15S 0.32 TCGA-FW-A3R5-06 1 116380921 116380921 C T NHLH2 Missense_Mutation p.G25S 0.27 tolerated_low_confidence(0.43) benign(0.049) TCGA-FW-A3R5-06 1 116569584 116569584 C T SLC22A15 Silent p.S223S 0.32 TCGA-FW-A3R5-06 1 116670241 116670241 C T MAB21L3 Silent p.S212S 0.24 TCGA-FW-A3R5-06 1 116675774 116675774 G A MAB21L3 Missense_Mutation p.E293K 0.33 deleterious(0.01) possibly_damaging(0.671) TCGA-FW-A3R5-06 1 116937852 116937852 C T ATP1A1 Missense_Mutation p.P594L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 116943869 116943869 C T ATP1A1 Nonsense_Mutation p.Q946* 0.12 TCGA-FW-A3R5-06 1 11710068 11710068 G A FBXO2 Missense_Mutation p.P152L 0.07 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 1 117122373 117122373 G A IGSF3 Missense_Mutation p.S1012F 0.25 tolerated(0.08) benign(0.163) TCGA-FW-A3R5-06 1 117297532 117297532 G A CD2 Missense_Mutation p.G114E 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 117311310 117311310 C T CD2 Missense_Mutation p.H321Y 0.27 tolerated(0.15) benign(0.043) TCGA-FW-A3R5-06 1 117504152 117504152 C T PTGFRN Missense_Mutation p.R501W 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 117509617 117509617 C T PTGFRN Missense_Mutation p.S575F 0.16 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 1 11766354 11766354 C T DRAXIN Silent p.F13F 0.30 TCGA-FW-A3R5-06 1 11766499 11766499 C T DRAXIN Missense_Mutation p.P62S 0.36 tolerated(0.1) benign(0.117) TCGA-FW-A3R5-06 1 117699466 117699466 C T VTCN1 Missense_Mutation p.E59K 0.21 tolerated(0.41) benign(0.137) TCGA-FW-A3R5-06 1 117712753 117712753 G A VTCN1 Missense_Mutation p.L25F 0.29 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 1 11808498 11808498 C T AGTRAP Silent p.I65I 0.25 TCGA-FW-A3R5-06 1 118166571 118166571 C T FAM46C Missense_Mutation p.P361S 0.14 deleterious(0.05) probably_damaging(0.994) TCGA-FW-A3R5-06 1 118166735 118166735 C T FAM46C 3'UTR 0.62 TCGA-FW-A3R5-06 1 118574371 118574371 C T SPAG17 Missense_Mutation p.E1185K 0.18 tolerated(0.46) benign(0.329) TCGA-FW-A3R5-06 1 118596651 118596651 G A SPAG17 Missense_Mutation p.P930S 0.14 tolerated(0.25) benign(0.032) TCGA-FW-A3R5-06 1 118598527 118598527 C T SPAG17 Missense_Mutation p.E851K 0.31 deleterious(0) possibly_damaging(0.84) TCGA-FW-A3R5-06 1 118624248 118624248 C T SPAG17 Missense_Mutation p.E594K 0.22 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 118629336 118629336 C T SPAG17 Silent p.L523L 0.32 TCGA-FW-A3R5-06 1 118629401 118629401 G A SPAG17 Missense_Mutation p.H502Y 0.28 tolerated(1) possibly_damaging(0.533) TCGA-FW-A3R5-06 1 118727822 118727822 G A SPAG17 5'UTR 0.19 TCGA-FW-A3R5-06 1 11907192 11907192 C T NPPA Missense_Mutation p.G143E 0.29 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 1 11907193 11907193 C T NPPA Missense_Mutation p.G143R 0.30 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 11918354 11918354 C T NPPB Missense_Mutation p.R102Q 0.29 tolerated(0.36) benign(0.142) TCGA-FW-A3R5-06 1 11918493 11918493 C T NPPB Missense_Mutation p.E56K 0.35 tolerated(0.11) possibly_damaging(0.584) TCGA-FW-A3R5-06 1 119427392 119427392 G A TBX15 Missense_Mutation p.P485L 0.23 tolerated_low_confidence(0.05) benign(0.059) TCGA-FW-A3R5-06 1 119427393 119427393 G A TBX15 Missense_Mutation p.P485S 0.24 tolerated_low_confidence(0.45) benign(0.043) TCGA-FW-A3R5-06 1 119427635 119427635 G A TBX15 Missense_Mutation p.S404F 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-FW-A3R5-06 1 119427641 119427641 G A TBX15 Missense_Mutation p.A402V 0.22 deleterious(0.03) probably_damaging(0.985) TCGA-FW-A3R5-06 1 119427724 119427724 G A TBX15 Silent p.V374V 0.29 TCGA-FW-A3R5-06 1 119428057 119428057 G A TBX15 Silent p.S263S 0.27 TCGA-FW-A3R5-06 1 119441727 119441727 C T TBX15 Missense_Mutation p.M210I 0.28 tolerated(0.14) benign(0.096) TCGA-FW-A3R5-06 1 119923749 119923749 G A HAO2 Missense_Mutation p.R14Q 0.29 tolerated(0.19) benign(0.025) TCGA-FW-A3R5-06 1 119927487 119927487 C T HAO2 Silent p.L124L 0.10 TCGA-FW-A3R5-06 1 119929406 119929406 C T HAO2 Silent p.I241I 0.26 TCGA-FW-A3R5-06 1 119934769 119934769 G A HAO2 Missense_Mutation p.G270R 0.18 deleterious(0.04) probably_damaging(0.991) TCGA-FW-A3R5-06 1 119934770 119934770 G A HAO2 Missense_Mutation p.G270E 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-FW-A3R5-06 1 119958174 119958174 G A HSD3B2 Silent p.E44E 0.28 TCGA-FW-A3R5-06 1 119962183 119962183 C T HSD3B2 Silent p.S95S 0.34 TCGA-FW-A3R5-06 1 119964551 119964551 G A HSD3B2 Missense_Mutation p.E143K 0.17 deleterious(0.01) benign(0.201) TCGA-FW-A3R5-06 1 119964834 119964834 G A HSD3B2 Missense_Mutation p.R237K 0.11 tolerated(0.19) benign(0.162) TCGA-FW-A3R5-06 1 120279789 120279789 C T PHGDH Missense_Mutation p.P282L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 120301848 120301848 G A HMGCS2 Missense_Mutation p.S248L 0.33 deleterious(0) possibly_damaging(0.548) TCGA-FW-A3R5-06 1 1203257 1203257 G A UBE2J2 Missense_Mutation p.S39L 0.23 deleterious(0) probably_damaging(0.93) TCGA-FW-A3R5-06 1 120337158 120337158 G A REG4 3'UTR 0.09 TCGA-FW-A3R5-06 1 120437486 120437486 C T ADAM30 Missense_Mutation p.E492K 0.37 tolerated(0.59) benign(0.008) TCGA-FW-A3R5-06 1 120437709 120437709 G A ADAM30 Silent p.S417S 0.25 TCGA-FW-A3R5-06 1 120438859 120438859 G A ADAM30 Missense_Mutation p.P34L 0.15 deleterious(0.03) possibly_damaging(0.542) TCGA-FW-A3R5-06 1 120458025 120458025 G A NOTCH2 Silent p.T2440T 0.16 TCGA-FW-A3R5-06 1 120464920 120464920 G A NOTCH2 Missense_Mutation p.R1718C 0.20 deleterious(0.01) possibly_damaging(0.719) TCGA-FW-A3R5-06 1 120491725 120491725 G A NOTCH2 Missense_Mutation p.A835V 0.32 tolerated(0.25) benign(0.146) TCGA-FW-A3R5-06 1 120512162 120512162 G A NOTCH2 Silent p.F360F 0.10 TCGA-FW-A3R5-06 1 120539917 120539917 G A NOTCH2 Missense_Mutation p.P152S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 1 12090106 12090106 C T MIIP Silent p.I289I 0.23 TCGA-FW-A3R5-06 1 120906269 120906269 G A RP11-439A17.4 5'Flank 0.25 TCGA-FW-A3R5-06 1 12144525 12144525 G A TNFRSF8 Missense_Mutation p.R23Q 0.08 tolerated(0.07) possibly_damaging(0.588) TCGA-FW-A3R5-06 1 12164447 12164447 G A TNFRSF8 Missense_Mutation p.E94K 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 1 1222349 1222349 C T SCNN1D Silent p.F371F 0.31 TCGA-FW-A3R5-06 1 12253142 12253142 C T TNFRSF1B Silent p.F258F 0.11 TCGA-FW-A3R5-06 1 12267090 12267090 G A TNFRSF1B 3'UTR 0.38 TCGA-FW-A3R5-06 1 12267133 12267133 C T TNFRSF1B 3'UTR 0.36 TCGA-FW-A3R5-06 1 1229502 1229502 G A ACAP3 Silent p.P739P 0.33 TCGA-FW-A3R5-06 1 12336400 12336400 C T VPS13D Missense_Mutation p.P919S 0.25 benign(0) TCGA-FW-A3R5-06 1 12343258 12343258 T A VPS13D Nonsense_Mutation p.L1700* 0.32 TCGA-FW-A3R5-06 1 12343364 12343364 C T VPS13D Silent p.V1735V 0.23 TCGA-FW-A3R5-06 1 12343664 12343664 C T VPS13D Silent p.I1835I 0.22 TCGA-FW-A3R5-06 1 12353605 12353605 C T VPS13D Silent p.L1959L 0.16 TCGA-FW-A3R5-06 1 12364652 12364652 C T VPS13D Silent p.S2102S 0.27 TCGA-FW-A3R5-06 1 12409257 12409257 C T VPS13D Missense_Mutation p.S3086L 0.20 benign(0.016) TCGA-FW-A3R5-06 1 1262938 1262938 C T GLTPD1 Missense_Mutation p.A147V 0.23 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 1 12638970 12638970 G A DHRS3 Silent p.F158F 0.16 TCGA-FW-A3R5-06 1 12677180 12677180 G A DHRS3 Silent p.F58F 0.35 TCGA-FW-A3R5-06 1 12704715 12704715 C T AADACL4 Silent p.F50F 0.24 TCGA-FW-A3R5-06 1 12711222 12711222 G A AADACL4 Silent p.K83K 0.28 TCGA-FW-A3R5-06 1 12711243 12711243 C T AADACL4 Silent p.T90T 0.28 TCGA-FW-A3R5-06 1 12725985 12725985 C T AADACL4 Missense_Mutation p.P155S 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 12725998 12725998 C T AADACL4 Missense_Mutation p.S159F 0.22 tolerated(0.58) benign(0.012) TCGA-FW-A3R5-06 1 12725999 12725999 C T AADACL4 Silent p.S159S 0.09 TCGA-FW-A3R5-06 1 12726000 12726000 C T AADACL4 Missense_Mutation p.P160S 0.08 deleterious(0.03) possibly_damaging(0.718) TCGA-FW-A3R5-06 1 12726382 12726382 C T AADACL4 Missense_Mutation p.P287L 0.30 tolerated(0.07) benign(0.065) TCGA-FW-A3R5-06 1 12785679 12785679 G A AADACL3 Missense_Mutation p.E257K 0.33 tolerated(0.06) probably_damaging(0.964) TCGA-FW-A3R5-06 1 12785747 12785747 C T AADACL3 Silent p.L279L 0.38 TCGA-FW-A3R5-06 1 12815753 12815753 G A C1orf158 Missense_Mutation p.R72K 0.35 tolerated(0.49) benign(0.032) TCGA-FW-A3R5-06 1 12819318 12819318 C T C1orf158 Missense_Mutation p.H101Y 0.30 deleterious(0.01) probably_damaging(0.96) TCGA-FW-A3R5-06 1 12820790 12820790 C T C1orf158 Missense_Mutation p.S164L 0.28 tolerated(0.32) benign(0.006) TCGA-FW-A3R5-06 1 12836064 12836064 C T PRAMEF12 Silent p.F222F 0.32 TCGA-FW-A3R5-06 1 12837370 12837370 C T PRAMEF12 Silent p.I360I 0.27 TCGA-FW-A3R5-06 1 12837749 12837749 C T PRAMEF12 3'UTR 0.22 TCGA-FW-A3R5-06 1 12853596 12853596 C T PRAMEF1 Missense_Mutation p.H74Y 0.23 tolerated(0.08) possibly_damaging(0.453) TCGA-FW-A3R5-06 1 12854106 12854106 G A PRAMEF1 Silent p.E110E 0.16 TCGA-FW-A3R5-06 1 12854285 12854285 G A PRAMEF1 Nonsense_Mutation p.W170* 0.09 TCGA-FW-A3R5-06 1 12854449 12854449 C T PRAMEF1 Missense_Mutation p.R225C 0.06 deleterious(0) benign(0.292) TCGA-FW-A3R5-06 1 12854466 12854466 G A PRAMEF1 Silent p.E230E 0.05 TCGA-FW-A3R5-06 1 12855782 12855782 C T PRAMEF1 Silent p.L354L 0.15 TCGA-FW-A3R5-06 1 12855900 12855900 C T PRAMEF1 Silent p.L394L 0.18 TCGA-FW-A3R5-06 1 12885181 12885181 G A PRAMEF11 Silent p.A310A 0.42 TCGA-FW-A3R5-06 1 12888524 12888524 G A PRAMEF11 5'UTR 0.22 TCGA-FW-A3R5-06 1 1290115 1290115 G A MXRA8 Missense_Mutation p.P299L 0.26 deleterious(0.05) benign(0.444) TCGA-FW-A3R5-06 1 1290116 1290116 G C MXRA8 Missense_Mutation p.P299A 0.25 tolerated(0.1) benign(0.138) TCGA-FW-A3R5-06 1 1290374 1290374 C T MXRA8 Missense_Mutation p.G213R 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 12907474 12907474 C T HNRNPCL1 Silent p.E223E 0.21 TCGA-FW-A3R5-06 1 12907641 12907641 C T HNRNPCL1 Missense_Mutation p.G168R 0.16 tolerated(0.06) benign(0.077) TCGA-FW-A3R5-06 1 12907650 12907650 C T HNRNPCL1 Missense_Mutation p.G165R 0.16 tolerated(0.2) possibly_damaging(0.594) TCGA-FW-A3R5-06 1 12907685 12907685 G A HNRNPCL1 Missense_Mutation p.S153L 0.14 tolerated(0.19) possibly_damaging(0.88) TCGA-FW-A3R5-06 1 12907749 12907749 G A HNRNPCL1 Missense_Mutation p.P132S 0.14 deleterious(0.05) benign(0.186) TCGA-FW-A3R5-06 1 12907882 12907882 C T HNRNPCL1 Silent p.E87E 0.09 TCGA-FW-A3R5-06 1 12907971 12907971 C T HNRNPCL1 Missense_Mutation p.D58N 0.10 tolerated(0.11) benign(0.003) TCGA-FW-A3R5-06 1 12918988 12918988 G A PRAMEF2 Missense_Mutation p.E42K 0.17 tolerated(0.06) probably_damaging(0.941) TCGA-FW-A3R5-06 1 12919074 12919074 G A PRAMEF2 Missense_Mutation p.M70I 0.23 tolerated(0.15) benign(0.009) TCGA-FW-A3R5-06 1 12919144 12919144 C T PRAMEF2 Missense_Mutation p.R94C 0.24 tolerated(0.09) possibly_damaging(0.629) TCGA-FW-A3R5-06 1 12939556 12939556 G A PRAMEF4 Missense_Mutation p.P416S 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 1 12939636 12939636 C T PRAMEF4 Missense_Mutation p.G389E 0.23 tolerated(0.2) probably_damaging(0.992) TCGA-FW-A3R5-06 1 12941704 12941704 G A PRAMEF4 Silent p.F282F 0.18 TCGA-FW-A3R5-06 1 12941788 12941788 C T PRAMEF4 Silent p.Q254Q 0.25 TCGA-FW-A3R5-06 1 12942180 12942180 G A PRAMEF4 Missense_Mutation p.H124Y 0.26 tolerated(0.82) benign(0.331) TCGA-FW-A3R5-06 1 12943017 12943017 G A PRAMEF4 Missense_Mutation p.P67S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 12943227 12943227 G A PRAMEF4 5'UTR 0.08 TCGA-FW-A3R5-06 1 12954428 12954428 C T PRAMEF10 Silent p.E285E 0.12 TCGA-FW-A3R5-06 1 12954982 12954982 G A PRAMEF10 Nonsense_Mutation p.Q101* 0.13 TCGA-FW-A3R5-06 1 12955431 12955431 C T PRAMEF10 Missense_Mutation p.R83K 0.26 tolerated(0.11) benign(0) TCGA-FW-A3R5-06 1 12955579 12955579 C T PRAMEF10 Missense_Mutation p.E34K 0.26 deleterious(0) possibly_damaging(0.838) TCGA-FW-A3R5-06 1 12955663 12955663 G A PRAMEF10 Missense_Mutation p.P6S 0.18 deleterious(0) probably_damaging(0.926) TCGA-FW-A3R5-06 1 12979735 12979735 G A PRAMEF7 Silent p.L309L 0.08 TCGA-FW-A3R5-06 1 12979755 12979755 C T PRAMEF7 Missense_Mutation p.P316L 0.33 benign(0.023) TCGA-FW-A3R5-06 1 12979793 12979793 G T PRAMEF7 Missense_Mutation p.V329F 0.09 benign(0.146) TCGA-FW-A3R5-06 1 12979817 12979817 G A PRAMEF7 Missense_Mutation p.E337K 0.08 possibly_damaging(0.581) TCGA-FW-A3R5-06 1 13036637 13036637 C T PRAMEF22 Missense_Mutation p.R237C 0.26 deleterious(0.01) benign(0.013) TCGA-FW-A3R5-06 1 13669325 13669325 G A PRAMEF14 Silent p.I335I 0.43 TCGA-FW-A3R5-06 1 13742931 13742931 C T PRAMEF20 Silent p.F40F 0.18 TCGA-FW-A3R5-06 1 1374645 1374645 C T VWA1 Silent p.G272G 0.23 TCGA-FW-A3R5-06 1 13910382 13910382 C T PDPN Missense_Mutation p.L28F 0.34 tolerated_low_confidence(0.11) benign(0.001) TCGA-FW-A3R5-06 1 13936915 13936915 C T PDPN Missense_Mutation p.R155C 0.27 tolerated(0.18) benign(0.011) TCGA-FW-A3R5-06 1 14106380 14106380 C T PRDM2 Missense_Mutation p.T697I 0.26 probably_damaging(0.982) TCGA-FW-A3R5-06 1 14106581 14106581 C T PRDM2 Missense_Mutation p.T764I 0.09 possibly_damaging(0.854) TCGA-FW-A3R5-06 1 14107221 14107221 C T PRDM2 Silent p.P977P 0.09 TCGA-FW-A3R5-06 1 142713517 142713517 C T RP11-417J8.6 RNA 0.11 TCGA-FW-A3R5-06 1 142803538 142803538 G A RP11-423O2.5 RNA 0.06 TCGA-FW-A3R5-06 1 143767313 143767313 G A PPIAL4G 3'UTR 0.12 TCGA-FW-A3R5-06 1 143767608 143767608 C A PPIAL4G Nonsense_Mutation p.E81* 0.19 TCGA-FW-A3R5-06 1 144856938 144856938 G A PDE4DIP Missense_Mutation p.H2183Y 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 1 144857686 144857686 G A PDE4DIP Missense_Mutation p.S2123F 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-FW-A3R5-06 1 144874791 144874791 G A PDE4DIP Missense_Mutation p.S1606F 0.09 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 1 144882455 144882455 A G PDE4DIP Silent p.D1188D 0.16 TCGA-FW-A3R5-06 1 144886117 144886117 G A PDE4DIP Silent p.F1039F 0.17 TCGA-FW-A3R5-06 1 144918897 144918897 C T PDE4DIP Missense_Mutation p.R430Q 0.10 tolerated(0.86) benign(0.133) TCGA-FW-A3R5-06 1 144994716 144994716 G A PDE4DIP Missense_Mutation p.R6C 0.08 deleterious(0) possibly_damaging(0.891) TCGA-FW-A3R5-06 1 145075737 145075737 G A PDE4DIP Silent p.S42S 0.11 TCGA-FW-A3R5-06 1 145075750 145075750 C T PDE4DIP Missense_Mutation p.R38Q 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.785) TCGA-FW-A3R5-06 1 145075915 145075915 C T PDE4DIP 5'UTR 0.10 TCGA-FW-A3R5-06 1 145103957 145103957 G A SEC22B RNA 0.13 TCGA-FW-A3R5-06 1 145303970 145303970 C T NBPF10 Missense_Mutation p.S456L 0.13 benign(0.434) TCGA-FW-A3R5-06 1 145415632 145415632 G A HFE2 Missense_Mutation p.E151K 0.16 deleterious(0.01) possibly_damaging(0.527) TCGA-FW-A3R5-06 1 145415657 145415657 G A HFE2 Missense_Mutation p.G159D 0.26 tolerated(0.08) benign(0.358) TCGA-FW-A3R5-06 1 145416700 145416700 G A HFE2 Missense_Mutation p.E349K 0.27 deleterious(0.02) benign(0.248) TCGA-FW-A3R5-06 1 145473840 145473840 C T ANKRD34A Missense_Mutation p.P171L 0.16 tolerated(0.14) benign(0.057) TCGA-FW-A3R5-06 1 145530351 145530351 G A ITGA10 Missense_Mutation p.R189Q 0.29 tolerated(0.12) benign(0.037) TCGA-FW-A3R5-06 1 145561502 145561502 C T ANKRD35 Missense_Mutation p.P397L 0.24 tolerated(0.11) benign(0.007) TCGA-FW-A3R5-06 1 145562712 145562712 G A ANKRD35 Missense_Mutation p.M800I 0.27 tolerated(0.09) benign(0.031) TCGA-FW-A3R5-06 1 145562977 145562977 G A ANKRD35 Missense_Mutation p.A889T 0.28 tolerated(0.1) benign(0.006) TCGA-FW-A3R5-06 1 145698847 145698847 C T CD160 Intron 0.40 TCGA-FW-A3R5-06 1 146634146 146634146 G A PRKAB2 Missense_Mutation p.S182F 0.13 deleterious(0.03) possibly_damaging(0.656) TCGA-FW-A3R5-06 1 146638497 146638497 G A PRKAB2 Silent p.I115I 0.21 TCGA-FW-A3R5-06 1 146658359 146658359 C T FMO5 3'UTR 0.36 TCGA-FW-A3R5-06 1 146684103 146684103 C T FMO5 Missense_Mutation p.G163E 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 147122011 147122011 G A ACP6 Silent p.F304F 0.34 TCGA-FW-A3R5-06 1 147230462 147230462 G A GJA5 Silent p.N295N 0.18 TCGA-FW-A3R5-06 1 147230687 147230687 G A GJA5 Silent p.L220L 0.42 TCGA-FW-A3R5-06 1 147380736 147380736 C T GJA8 Silent p.F218F 0.24 TCGA-FW-A3R5-06 1 147381126 147381126 G A GJA8 Silent p.E348E 0.21 TCGA-FW-A3R5-06 1 148022967 148022967 G A NBPF14 Silent p.S181S 0.18 TCGA-FW-A3R5-06 1 14925592 14925592 C T KAZN Silent p.T33T 0.23 TCGA-FW-A3R5-06 1 149760060 149760060 G A FCGR1A Nonsense_Mutation p.W149* 0.26 TCGA-FW-A3R5-06 1 149878254 149878254 C T SV2A Silent p.G611G 0.18 TCGA-FW-A3R5-06 1 149879672 149879672 C T SV2A Missense_Mutation p.G489E 0.27 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 1 149879693 149879693 G A SV2A Missense_Mutation p.S482F 0.22 deleterious(0) probably_damaging(0.91) TCGA-FW-A3R5-06 1 149882467 149882467 C T SV2A Missense_Mutation p.R289Q 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 149882491 149882491 G A SV2A Missense_Mutation p.S281F 0.11 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 149883447 149883447 G A SV2A Silent p.L236L 0.23 TCGA-FW-A3R5-06 1 149884829 149884829 G A SV2A Silent p.F188F 0.21 TCGA-FW-A3R5-06 1 149899118 149899118 G A SF3B4 Nonsense_Mutation p.Q35* 0.16 TCGA-FW-A3R5-06 1 149901663 149901663 G A MTMR11 Missense_Mutation p.S598F 0.25 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 1 149903251 149903251 G A MTMR11 Silent p.A397A 0.14 TCGA-FW-A3R5-06 1 149905338 149905338 G A MTMR11 Nonsense_Mutation p.Q316* 0.30 TCGA-FW-A3R5-06 1 149906993 149906993 G A MTMR11 Silent p.L118L 0.24 TCGA-FW-A3R5-06 1 149916067 149916067 G A OTUD7B Missense_Mutation p.P741S 0.36 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 1 150065671 150065671 C T VPS45 Silent p.L474L 0.31 TCGA-FW-A3R5-06 1 150255959 150255959 G A C1orf51 Silent p.A94A 0.28 TCGA-FW-A3R5-06 1 150259114 150259114 C T C1orf51 Silent p.P302P 0.09 TCGA-FW-A3R5-06 1 150432701 150432701 C T RPRD2 Missense_Mutation p.S440F 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.665) TCGA-FW-A3R5-06 1 150443463 150443463 C T RPRD2 Missense_Mutation p.P680L 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 150445091 150445091 C T RPRD2 Missense_Mutation p.H1223Y 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.551) TCGA-FW-A3R5-06 1 150471471 150471471 C T TARS2 Silent p.G500G 0.07 TCGA-FW-A3R5-06 1 150483300 150483300 C T ECM1 Intron 0.31 TCGA-FW-A3R5-06 1 150530026 150530026 G A ADAMTSL4 Missense_Mutation p.E702K 0.38 deleterious(0) possibly_damaging(0.721) TCGA-FW-A3R5-06 1 150671079 150671079 C T HORMAD1 3'UTR 0.38 TCGA-FW-A3R5-06 1 150672595 150672595 C T HORMAD1 Missense_Mutation p.G366E 0.16 tolerated(0.64) benign(0.006) TCGA-FW-A3R5-06 1 150722495 150722495 G A CTSS Silent p.F260F 0.24 TCGA-FW-A3R5-06 1 150955861 150955861 C T ANXA9 Silent p.F41F 0.32 TCGA-FW-A3R5-06 1 151015480 151015480 G A BNIPL Missense_Mutation p.R161K 0.33 tolerated(0.76) benign(0.004) TCGA-FW-A3R5-06 1 151105853 151105853 G A SEMA6C Nonsense_Mutation p.R666* 0.33 TCGA-FW-A3R5-06 1 151105854 151105854 G A SEMA6C Silent p.H665H 0.33 TCGA-FW-A3R5-06 1 151105886 151105886 G A SEMA6C Missense_Mutation p.L655F 0.21 tolerated(0.59) possibly_damaging(0.765) TCGA-FW-A3R5-06 1 151108512 151108512 G A SEMA6C Nonsense_Mutation p.Q412* 0.35 TCGA-FW-A3R5-06 1 151115019 151115019 G A SEMA6C Missense_Mutation p.P27S 0.44 deleterious(0) possibly_damaging(0.803) TCGA-FW-A3R5-06 1 151134286 151134286 G A LYSMD1 Silent p.F157F 0.35 TCGA-FW-A3R5-06 1 151149084 151149084 G A VPS72 3'UTR 0.07 TCGA-FW-A3R5-06 1 151205035 151205035 C T PIP5K1A Silent p.L165L 0.37 TCGA-FW-A3R5-06 1 151238796 151238796 C T PSMD4 Missense_Mutation p.A259V 0.27 tolerated(0.06) benign(0.023) TCGA-FW-A3R5-06 1 151259552 151259552 T A ZNF687 Missense_Mutation p.F262Y 0.20 tolerated(0.1) probably_damaging(0.97) TCGA-FW-A3R5-06 1 151315436 151315436 G A RFX5 Silent p.A359A 0.34 TCGA-FW-A3R5-06 1 151337180 151337180 C T SELENBP1 Missense_Mutation p.E420K 0.09 tolerated(0.77) benign(0.021) TCGA-FW-A3R5-06 1 151339220 151339220 G A SELENBP1 Silent p.F214F 0.25 TCGA-FW-A3R5-06 1 151400307 151400307 G A POGZ Missense_Mutation p.S357L 0.17 tolerated(0.07) benign(0.298) TCGA-FW-A3R5-06 1 151400505 151400505 G A POGZ Missense_Mutation p.P291L 0.19 tolerated(0.66) benign(0.023) TCGA-FW-A3R5-06 1 151509861 151509861 C T CGN 3'UTR 0.31 TCGA-FW-A3R5-06 1 151734888 151734888 G A MRPL9 Silent p.S133S 0.11 TCGA-FW-A3R5-06 1 151747249 151747249 G A TDRKH Missense_Mutation p.L524F 0.28 tolerated(0.1) benign(0.005) TCGA-FW-A3R5-06 1 151751443 151751443 G A TDRKH Missense_Mutation p.R201W 0.24 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 1 151751698 151751698 G A TDRKH Missense_Mutation p.R148C 0.23 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 1 151774528 151774528 C T LINGO4 Missense_Mutation p.R218K 0.24 tolerated(0.22) benign(0.258) TCGA-FW-A3R5-06 1 151789722 151789722 C T RORC Silent p.G35G 0.23 TCGA-FW-A3R5-06 1 151798511 151798511 C T RORC Intron 0.36 TCGA-FW-A3R5-06 1 151804206 151804206 G A RORC Missense_Mutation p.S12L 0.10 deleterious_low_confidence(0.01) benign(0.018) TCGA-FW-A3R5-06 1 151820663 151820663 G A THEM5 Silent p.F190F 0.25 TCGA-FW-A3R5-06 1 152057759 152057759 G A TCHHL1 Missense_Mutation p.P800L 0.28 deleterious(0) possibly_damaging(0.674) TCGA-FW-A3R5-06 1 152057846 152057846 G A TCHHL1 Missense_Mutation p.S771F 0.17 deleterious(0.01) possibly_damaging(0.758) TCGA-FW-A3R5-06 1 152058960 152058960 G A TCHHL1 Missense_Mutation p.H400Y 0.29 deleterious(0.01) possibly_damaging(0.854) TCGA-FW-A3R5-06 1 152059153 152059153 T C TCHHL1 Silent p.E335E 0.20 TCGA-FW-A3R5-06 1 152059682 152059682 G A TCHHL1 Missense_Mutation p.P159L 0.14 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 1 152059716 152059716 C T TCHHL1 Missense_Mutation p.E148K 0.30 tolerated(0.05) benign(0.266) TCGA-FW-A3R5-06 1 152059983 152059983 G A TCHHL1 Missense_Mutation p.L59F 0.39 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 1 152060506 152060506 C T TCHHL1 Silent p.Q38Q 0.21 TCGA-FW-A3R5-06 1 152080427 152080427 G A TCHH Missense_Mutation p.R1756C 0.12 unknown(0) TCGA-FW-A3R5-06 1 152081132 152081132 C T TCHH Missense_Mutation p.E1521K 0.16 unknown(0) TCGA-FW-A3R5-06 1 152081480 152081480 C T TCHH Missense_Mutation p.E1405K 0.24 unknown(0) TCGA-FW-A3R5-06 1 152081516 152081516 G A TCHH Missense_Mutation p.L1393F 0.11 unknown(0) TCGA-FW-A3R5-06 1 152083782 152083782 C T TCHH Silent p.E637E 0.12 TCGA-FW-A3R5-06 1 152084126 152084126 C T TCHH Missense_Mutation p.E523K 0.18 unknown(0) TCGA-FW-A3R5-06 1 152084368 152084368 C T TCHH Missense_Mutation p.R442K 0.18 unknown(0) TCGA-FW-A3R5-06 1 152085471 152085471 G A TCHH Silent p.F74F 0.15 TCGA-FW-A3R5-06 1 152086448 152086448 G A TCHH Missense_Mutation p.L37F 0.15 unknown(0) TCGA-FW-A3R5-06 1 152127505 152127505 C T RPTN Silent p.Q690Q 0.27 TCGA-FW-A3R5-06 1 152127615 152127615 C T RPTN Missense_Mutation p.D654N 0.22 deleterious(0.04) probably_damaging(0.983) TCGA-FW-A3R5-06 1 152127776 152127776 C T RPTN Missense_Mutation p.G600E 0.27 tolerated(0.2) benign(0.109) TCGA-FW-A3R5-06 1 152127777 152127777 C T RPTN Missense_Mutation p.G600R 0.27 deleterious(0) benign(0.391) TCGA-FW-A3R5-06 1 152128509 152128509 C T RPTN Missense_Mutation p.D356N 0.30 deleterious(0.01) benign(0.039) TCGA-FW-A3R5-06 1 152128681 152128681 C T RPTN Silent p.T298T 0.26 TCGA-FW-A3R5-06 1 152187840 152187840 C T HRNR Missense_Mutation p.G2089S 0.24 unknown(0) TCGA-FW-A3R5-06 1 152188066 152188066 G A HRNR Silent p.S2013S 0.06 TCGA-FW-A3R5-06 1 152188190 152188190 C T HRNR Missense_Mutation p.G1972E 0.04 unknown(0) TCGA-FW-A3R5-06 1 152191233 152191233 C T HRNR Missense_Mutation p.E958K 0.29 unknown(0) TCGA-FW-A3R5-06 1 152191385 152191385 C T HRNR Missense_Mutation p.G907D 0.27 unknown(0) TCGA-FW-A3R5-06 1 152192594 152192594 C T HRNR Missense_Mutation p.G504D 0.23 unknown(0) TCGA-FW-A3R5-06 1 152192595 152192595 C T HRNR Missense_Mutation p.G504S 0.23 unknown(0) TCGA-FW-A3R5-06 1 152193650 152193650 G A HRNR Missense_Mutation p.T152I 0.07 possibly_damaging(0.669) TCGA-FW-A3R5-06 1 152193831 152193831 C T HRNR Missense_Mutation p.D92N 0.26 probably_damaging(0.991) TCGA-FW-A3R5-06 1 152275534 152275534 C T FLG Missense_Mutation p.G3943E 0.33 unknown(0) TCGA-FW-A3R5-06 1 152275650 152275650 G A FLG Silent p.S3904S 0.26 TCGA-FW-A3R5-06 1 152275978 152275978 C T FLG Missense_Mutation p.G3795E 0.28 unknown(0) TCGA-FW-A3R5-06 1 152276647 152276647 C T FLG Missense_Mutation p.R3572K 0.07 unknown(0) TCGA-FW-A3R5-06 1 152276773 152276773 C T FLG Missense_Mutation p.R3530K 0.27 unknown(0) TCGA-FW-A3R5-06 1 152277022 152277022 C T FLG Missense_Mutation p.G3447E 0.31 unknown(0) TCGA-FW-A3R5-06 1 152277031 152277031 C T FLG Missense_Mutation p.G3444E 0.28 unknown(0) TCGA-FW-A3R5-06 1 152277924 152277924 C T FLG Silent p.Q3146Q 0.24 TCGA-FW-A3R5-06 1 152278088 152278088 C T FLG Missense_Mutation p.E3092K 0.26 unknown(0) TCGA-FW-A3R5-06 1 152278193 152278193 C T FLG Missense_Mutation p.G3057R 0.16 unknown(0) TCGA-FW-A3R5-06 1 152278822 152278822 G A FLG Missense_Mutation p.S2847L 0.13 benign(0.092) TCGA-FW-A3R5-06 1 152279574 152279574 C T FLG Silent p.Q2596Q 0.32 TCGA-FW-A3R5-06 1 152279588 152279588 G A FLG Missense_Mutation p.H2592Y 0.09 benign(0.012) TCGA-FW-A3R5-06 1 152280073 152280073 C T FLG Missense_Mutation p.R2430Q 0.20 benign(0.097) TCGA-FW-A3R5-06 1 152280433 152280433 G A FLG Missense_Mutation p.S2310F 0.24 possibly_damaging(0.485) TCGA-FW-A3R5-06 1 152280446 152280446 G A FLG Missense_Mutation p.H2306Y 0.24 benign(0.152) TCGA-FW-A3R5-06 1 152280694 152280694 G A FLG Missense_Mutation p.S2223L 0.31 possibly_damaging(0.637) TCGA-FW-A3R5-06 1 152280766 152280766 G A FLG Missense_Mutation p.S2199L 0.30 benign(0.307) TCGA-FW-A3R5-06 1 152281220 152281220 C T FLG Missense_Mutation p.E2048K 0.29 possibly_damaging(0.621) TCGA-FW-A3R5-06 1 152281792 152281792 C T FLG Missense_Mutation p.G1857E 0.25 probably_damaging(0.931) TCGA-FW-A3R5-06 1 152281937 152281937 C T FLG Missense_Mutation p.G1809S 0.19 possibly_damaging(0.855) TCGA-FW-A3R5-06 1 152282195 152282195 C T FLG Missense_Mutation p.E1723K 0.29 possibly_damaging(0.635) TCGA-FW-A3R5-06 1 152282402 152282402 C T FLG Missense_Mutation p.G1654S 0.27 possibly_damaging(0.855) TCGA-FW-A3R5-06 1 152282624 152282624 C T FLG Missense_Mutation p.E1580K 0.33 possibly_damaging(0.621) TCGA-FW-A3R5-06 1 152283247 152283247 C T FLG Missense_Mutation p.G1372D 0.27 probably_damaging(0.982) TCGA-FW-A3R5-06 1 152283989 152283989 C T FLG Missense_Mutation p.E1125K 0.27 benign(0.292) TCGA-FW-A3R5-06 1 152284502 152284502 C T FLG Missense_Mutation p.G954R 0.29 possibly_damaging(0.888) TCGA-FW-A3R5-06 1 152284619 152284619 C T FLG Missense_Mutation p.E915K 0.28 probably_damaging(0.965) TCGA-FW-A3R5-06 1 152286549 152286549 C T FLG Silent p.V271V 0.08 TCGA-FW-A3R5-06 1 152286638 152286638 C T FLG Missense_Mutation p.E242K 0.29 possibly_damaging(0.637) TCGA-FW-A3R5-06 1 152286683 152286684 - T FLG Frame_Shift_Ins p.W227Mfs*16 0.20 TCGA-FW-A3R5-06 1 152286797 152286797 C T FLG Missense_Mutation p.E189K 0.10 benign(0.224) TCGA-FW-A3R5-06 1 152286905 152286905 C T FLG Missense_Mutation p.E153K 0.11 benign(0.438) TCGA-FW-A3R5-06 1 152286946 152286946 C T FLG Missense_Mutation p.G139E 0.21 probably_damaging(0.97) TCGA-FW-A3R5-06 1 152287358 152287358 C T FLG Intron 0.30 TCGA-FW-A3R5-06 1 152323637 152323637 C T FLG2 Missense_Mutation p.G2209R 0.08 benign(0.087) TCGA-FW-A3R5-06 1 152324066 152324066 G A FLG2 Missense_Mutation p.H2066Y 0.29 benign(0.403) TCGA-FW-A3R5-06 1 152324482 152324482 C T FLG2 Missense_Mutation p.G1927E 0.29 probably_damaging(0.926) TCGA-FW-A3R5-06 1 152324495 152324495 G A FLG2 Missense_Mutation p.H1923Y 0.19 probably_damaging(0.985) TCGA-FW-A3R5-06 1 152324972 152324972 G A FLG2 Missense_Mutation p.H1764Y 0.27 probably_damaging(0.962) TCGA-FW-A3R5-06 1 152325151 152325151 C T FLG2 Missense_Mutation p.R1704K 0.23 benign(0.067) TCGA-FW-A3R5-06 1 152325619 152325619 C T FLG2 Missense_Mutation p.G1548E 0.16 possibly_damaging(0.878) TCGA-FW-A3R5-06 1 152326001 152326001 C T FLG2 Missense_Mutation p.G1421R 0.30 benign(0.031) TCGA-FW-A3R5-06 1 152326351 152326351 C T FLG2 Missense_Mutation p.G1304E 0.19 benign(0) TCGA-FW-A3R5-06 1 152327273 152327273 A T FLG2 Missense_Mutation p.S997T 0.29 unknown(0) TCGA-FW-A3R5-06 1 152328286 152328286 C T FLG2 Missense_Mutation p.G659E 0.27 unknown(0) TCGA-FW-A3R5-06 1 152329580 152329580 C T FLG2 Missense_Mutation p.G228R 0.25 unknown(0) TCGA-FW-A3R5-06 1 152329710 152329710 G A FLG2 Silent p.S184S 0.30 TCGA-FW-A3R5-06 1 152382199 152382199 G A CRNN Silent p.L453L 0.25 TCGA-FW-A3R5-06 1 152382267 152382267 C T CRNN Missense_Mutation p.G431R 0.32 tolerated(0.19) benign(0.086) TCGA-FW-A3R5-06 1 152382554 152382554 C T CRNN Missense_Mutation p.R335K 0.26 tolerated(0.25) benign(0.003) TCGA-FW-A3R5-06 1 152383212 152383212 C T CRNN Missense_Mutation p.G116R 0.34 tolerated(0.05) benign(0.132) TCGA-FW-A3R5-06 1 152383234 152383234 C T CRNN Silent p.G108G 0.24 TCGA-FW-A3R5-06 1 152538680 152538680 G A LCE3E Missense_Mutation p.S2F 0.29 tolerated_low_confidence(0.15) unknown(0) TCGA-FW-A3R5-06 1 152552347 152552347 G A LCE3D Silent p.P22P 0.13 TCGA-FW-A3R5-06 1 152573387 152573387 C T LCE3C Silent p.F60F 0.51 TCGA-FW-A3R5-06 1 152573546 152573546 G A LCE3C 3'UTR 0.62 TCGA-FW-A3R5-06 1 152636718 152636718 C T LCE2D Missense_Mutation p.S46F 0.30 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 1 152671682 152671682 C T LCE2A Missense_Mutation p.S102F 0.14 tolerated_low_confidence(0.25) unknown(0) TCGA-FW-A3R5-06 1 152733505 152733505 C T KPRP Silent p.L481L 0.33 TCGA-FW-A3R5-06 1 152733510 152733510 G A KPRP Silent p.P482P 0.29 TCGA-FW-A3R5-06 1 152733541 152733541 G A KPRP Missense_Mutation p.E493K 0.31 deleterious_low_confidence(0.02) benign(0.006) TCGA-FW-A3R5-06 1 152748845 152748845 G A LCE1F 5'Flank 0.32 TCGA-FW-A3R5-06 1 152760099 152760099 G A LCE1E Silent p.G108G 0.24 TCGA-FW-A3R5-06 1 152800190 152800190 G A LCE1A Missense_Mutation p.R81K 0.31 tolerated_low_confidence(0.67) unknown(0) TCGA-FW-A3R5-06 1 152856947 152856947 C T SMCP Nonsense_Mutation p.Q17* 0.14 TCGA-FW-A3R5-06 1 152882619 152882619 G A IVL Missense_Mutation p.D116N 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 1 152883916 152883916 C T IVL Missense_Mutation p.A548V 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A3R5-06 1 152884046 152884046 C T IVL 3'UTR 0.33 TCGA-FW-A3R5-06 1 152884066 152884066 C T IVL 3'UTR 0.32 TCGA-FW-A3R5-06 1 152944652 152944652 G A SPRR4 3'UTR 0.18 TCGA-FW-A3R5-06 1 152958067 152958067 C T SPRR1A 3'UTR 0.32 TCGA-FW-A3R5-06 1 152975769 152975769 C T SPRR3 Silent p.T91T 0.16 TCGA-FW-A3R5-06 1 152975793 152975793 C T SPRR3 Silent p.T99T 0.14 TCGA-FW-A3R5-06 1 153012491 153012491 G A SPRR2D 3'UTR 0.10 TCGA-FW-A3R5-06 1 153012585 153012585 C T SPRR2D 3'UTR 0.30 TCGA-FW-A3R5-06 1 153012737 153012737 G A SPRR2D Missense_Mutation p.P29L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 1 153012740 153012740 G A SPRR2D Missense_Mutation p.P28L 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 1 153012824 153012824 C T SPRR2D 5'UTR 0.10 TCGA-FW-A3R5-06 1 153043044 153043044 G A SPRR2B 3'UTR 0.37 TCGA-FW-A3R5-06 1 153084938 153084938 G A SPRR2F 3'UTR 0.34 TCGA-FW-A3R5-06 1 153177391 153177391 C T LELP1 Missense_Mutation p.P70S 0.32 tolerated_low_confidence(0.28) unknown(0) TCGA-FW-A3R5-06 1 153270343 153270343 G A PGLYRP3 3'UTR 0.33 TCGA-FW-A3R5-06 1 153274984 153274984 G A PGLYRP3 Missense_Mutation p.A210V 0.33 deleterious(0.04) benign(0.102) TCGA-FW-A3R5-06 1 153276337 153276337 C T PGLYRP3 Silent p.R175R 0.28 TCGA-FW-A3R5-06 1 153279637 153279637 C T PGLYRP3 Silent p.G54G 0.31 TCGA-FW-A3R5-06 1 153279643 153279643 G A PGLYRP3 Silent p.L52L 0.36 TCGA-FW-A3R5-06 1 153312970 153312970 G A PGLYRP4 Silent p.I237I 0.26 TCGA-FW-A3R5-06 1 153347053 153347053 C T S100A12 Missense_Mutation p.E6K 0.30 tolerated(1) benign(0.038) TCGA-FW-A3R5-06 1 153362551 153362551 G A S100A8 3'UTR 0.36 TCGA-FW-A3R5-06 1 153362973 153362973 G A S100A8 Silent p.I13I 0.31 TCGA-FW-A3R5-06 1 153430230 153430230 G A S100A7 3'UTR 0.26 TCGA-FW-A3R5-06 1 153430265 153430265 C T S100A7 3'UTR 0.28 TCGA-FW-A3R5-06 1 153430313 153430313 C T S100A7 Missense_Mutation p.G92E 0.27 tolerated(0.07) benign(0.101) TCGA-FW-A3R5-06 1 153430423 153430423 G A S100A7 Silent p.L55L 0.20 TCGA-FW-A3R5-06 1 153431388 153431388 C T S100A7 Silent p.T34T 0.26 TCGA-FW-A3R5-06 1 153431438 153431438 G A S100A7 Missense_Mutation p.H18Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 153516104 153516104 C T S100A4 3'UTR 0.29 TCGA-FW-A3R5-06 1 153520173 153520173 G A S100A3 Silent p.P97P 0.18 TCGA-FW-A3R5-06 1 153520175 153520175 G A S100A3 Missense_Mutation p.P97S 0.27 tolerated(0.14) benign(0.212) TCGA-FW-A3R5-06 1 153604047 153604047 G A S100A1 Intron 0.28 TCGA-FW-A3R5-06 1 153615659 153615659 C T CHTOP Intron 0.17 TCGA-FW-A3R5-06 1 153652206 153652206 C T NPR1 Missense_Mutation p.R208C 0.16 deleterious(0.02) possibly_damaging(0.5) TCGA-FW-A3R5-06 1 153652232 153652232 C T NPR1 Silent p.D216D 0.29 TCGA-FW-A3R5-06 1 153655048 153655048 G A NPR1 Missense_Mutation p.E416K 0.20 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 1 153660163 153660163 G A NPR1 Missense_Mutation p.G716S 0.26 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 1 153661465 153661465 C T NPR1 Silent p.S818S 0.20 TCGA-FW-A3R5-06 1 153661707 153661707 G A NPR1 Missense_Mutation p.E870K 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 153724787 153724787 C T INTS3 Silent p.L254L 0.24 TCGA-FW-A3R5-06 1 153749612 153749612 C T SLC27A3 Missense_Mutation p.H365Y 0.25 tolerated(1) benign(0.242) TCGA-FW-A3R5-06 1 153751848 153751848 C T SLC27A3 Silent p.L639L 0.28 TCGA-FW-A3R5-06 1 153913883 153913883 G A DENND4B Silent p.F363F 0.23 TCGA-FW-A3R5-06 1 153925837 153925837 G A CRTC2 Missense_Mutation p.S171F 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 153932928 153932928 G A SLC39A1 Silent p.A207A 0.28 TCGA-FW-A3R5-06 1 153932929 153932929 G A SLC39A1 Missense_Mutation p.A207V 0.27 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 154067584 154067584 C T NUP210L Missense_Mutation p.E672K 0.33 deleterious(0) possibly_damaging(0.844) TCGA-FW-A3R5-06 1 154072474 154072474 C T NUP210L Silent p.K655K 0.28 TCGA-FW-A3R5-06 1 154163758 154163758 C T TPM3 Silent p.K49K 0.35 TCGA-FW-A3R5-06 1 154186378 154186378 G A C1orf43 Missense_Mutation p.R111C 0.20 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3R5-06 1 154207104 154207104 C T UBAP2L Missense_Mutation p.S106L 0.22 tolerated(0.7) unknown(0) TCGA-FW-A3R5-06 1 154296130 154296130 C T AQP10 Silent p.V185V 0.23 TCGA-FW-A3R5-06 1 154296247 154296247 C T AQP10 Silent p.F224F 0.22 TCGA-FW-A3R5-06 1 154297067 154297067 C T AQP10 3'UTR 0.38 TCGA-FW-A3R5-06 1 154303543 154303543 C T ATP8B2 Missense_Mutation p.S108F 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 1 154306661 154306661 C T ATP8B2 Missense_Mutation p.P256L 0.08 tolerated(0.23) benign(0.165) TCGA-FW-A3R5-06 1 154317530 154317530 C T ATP8B2 Silent p.T823T 0.28 TCGA-FW-A3R5-06 1 154456519 154456519 C T SHE 3'UTR 0.40 TCGA-FW-A3R5-06 1 154461646 154461646 C T SHE Missense_Mutation p.R302K 0.28 tolerated(0.65) benign(0) TCGA-FW-A3R5-06 1 154471640 154471640 G A SHE Silent p.V222V 0.29 TCGA-FW-A3R5-06 1 154492783 154492783 G A TDRD10 Missense_Mutation p.E49K 0.33 tolerated(0.07) benign(0.086) TCGA-FW-A3R5-06 1 154516910 154516910 C T TDRD10 Silent p.P238P 0.20 TCGA-FW-A3R5-06 1 154520075 154520075 G A TDRD10 3'UTR 0.36 TCGA-FW-A3R5-06 1 154543767 154543767 G A CHRNB2 Silent p.K156K 0.41 TCGA-FW-A3R5-06 1 154544019 154544019 C T CHRNB2 Silent p.N240N 0.29 TCGA-FW-A3R5-06 1 154562857 154562857 G A ADAR Missense_Mutation p.R767C 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 154687474 154687474 C T KCNN3 Silent p.K569K 0.22 TCGA-FW-A3R5-06 1 154744507 154744507 G A KCNN3 Silent p.L464L 0.24 TCGA-FW-A3R5-06 1 154744764 154744764 G A KCNN3 Missense_Mutation p.P379S 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 154841789 154841789 C T KCNN3 Missense_Mutation p.E218K 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-FW-A3R5-06 1 154842466 154842466 A C KCNN3 5'UTR 0.30 TCGA-FW-A3R5-06 1 154897656 154897656 G A PMVK Silent p.R176R 0.18 TCGA-FW-A3R5-06 1 154898850 154898850 C T PMVK Missense_Mutation p.R141Q 0.32 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 1 154917523 154917523 G A PBXIP1 Missense_Mutation p.H725Y 0.31 tolerated_low_confidence(0.17) unknown(0) TCGA-FW-A3R5-06 1 154960590 154960590 C T FLAD1 Nonsense_Mutation p.Q128* 0.24 TCGA-FW-A3R5-06 1 154960885 154960885 C T FLAD1 Missense_Mutation p.S226F 0.33 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 1 154987313 154987313 C T ZBTB7B Silent p.F93F 0.08 TCGA-FW-A3R5-06 1 155002584 155002584 C T DCST2 Missense_Mutation p.E385K 0.30 deleterious(0.03) probably_damaging(0.943) TCGA-FW-A3R5-06 1 155004051 155004051 G A DCST2 Silent p.S246S 0.29 TCGA-FW-A3R5-06 1 155018608 155018608 G A DCST1 Missense_Mutation p.R427Q 0.24 tolerated(0.23) benign(0.119) TCGA-FW-A3R5-06 1 155039326 155039326 G A EFNA4 Silent p.V78V 0.32 TCGA-FW-A3R5-06 1 155148391 155148391 G A TRIM46 Missense_Mutation p.R118Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 155150523 155150523 G A TRIM46 Missense_Mutation p.G319R 0.31 tolerated(0.51) possibly_damaging(0.467) TCGA-FW-A3R5-06 1 155178747 155178747 G A MTX1 Missense_Mutation p.G51E 0.41 deleterious_low_confidence(0.01) benign(0.006) TCGA-FW-A3R5-06 1 155207230 155207230 G A GBA Missense_Mutation p.R301C 0.17 tolerated(0.18) possibly_damaging(0.642) TCGA-FW-A3R5-06 1 155227093 155227093 G T SCAMP3 Silent p.I254I 0.24 TCGA-FW-A3R5-06 1 155227153 155227153 G A SCAMP3 Silent p.F234F 0.21 TCGA-FW-A3R5-06 1 155234488 155234488 G A CLK2 Silent p.H336H 0.27 TCGA-FW-A3R5-06 1 155253804 155253804 C T HCN3 Missense_Mutation p.R250C 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 155264273 155264273 C T PKLR Missense_Mutation p.R322K 0.28 tolerated(0.39) benign(0.001) TCGA-FW-A3R5-06 1 155264286 155264286 C T PKLR Missense_Mutation p.E318K 0.26 deleterious(0) possibly_damaging(0.86) TCGA-FW-A3R5-06 1 155340754 155340754 G A ASH1L Missense_Mutation p.S2118F 0.27 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 155408848 155408848 G A ASH1L Missense_Mutation p.P1700S 0.19 tolerated_low_confidence(0.17) benign(0.005) TCGA-FW-A3R5-06 1 155448284 155448284 G A ASH1L Silent p.P1459P 0.24 TCGA-FW-A3R5-06 1 155448522 155448522 G A ASH1L Missense_Mutation p.P1380L 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 155448661 155448661 G A ASH1L Missense_Mutation p.P1334S 0.21 tolerated_low_confidence(0.39) probably_damaging(0.999) TCGA-FW-A3R5-06 1 155451384 155451384 G A ASH1L Missense_Mutation p.A426V 0.35 tolerated_low_confidence(0.1) benign(0.073) TCGA-FW-A3R5-06 1 155630087 155630087 G A YY1AP1 Silent p.A676A 0.32 TCGA-FW-A3R5-06 1 155630966 155630966 G A YY1AP1 Intron 0.20 TCGA-FW-A3R5-06 1 155724215 155724215 G A GON4L Missense_Mutation p.S1861F 0.10 deleterious(0.04) possibly_damaging(0.683) TCGA-FW-A3R5-06 1 155774872 155774872 G A GON4L Missense_Mutation p.P505S 0.29 tolerated(0.1) possibly_damaging(0.803) TCGA-FW-A3R5-06 1 155774885 155774885 G A GON4L Silent p.P500P 0.24 TCGA-FW-A3R5-06 1 155790444 155790444 G A GON4L Missense_Mutation p.P323S 0.26 deleterious(0) possibly_damaging(0.803) TCGA-FW-A3R5-06 1 155792079 155792079 G A GON4L Missense_Mutation p.H296Y 0.32 deleterious(0) benign(0.291) TCGA-FW-A3R5-06 1 155931555 155931555 G A ARHGEF2 Silent p.T455T 0.26 TCGA-FW-A3R5-06 1 155979226 155979226 G A SSR2 3'UTR 0.33 TCGA-FW-A3R5-06 1 156018388 156018388 G A UBQLN4 Silent p.A268A 0.34 TCGA-FW-A3R5-06 1 156031045 156031045 C T RAB25 5'UTR 0.27 TCGA-FW-A3R5-06 1 156038175 156038175 C T RAB25 Silent p.I118I 0.18 TCGA-FW-A3R5-06 1 156040119 156040119 C T RAB25 3'UTR 0.31 TCGA-FW-A3R5-06 1 156128250 156128250 C T SEMA4A Silent p.F145F 0.25 TCGA-FW-A3R5-06 1 156128253 156128253 C T SEMA4A Silent p.A146A 0.08 TCGA-FW-A3R5-06 1 156146889 156146889 C T SEMA4A 3'UTR 0.44 TCGA-FW-A3R5-06 1 1562297 1562297 C T MIB2 Silent p.T501T 0.39 TCGA-FW-A3R5-06 1 156230268 156230268 G A SMG5 Missense_Mutation p.R753W 0.10 tolerated(0.08) probably_damaging(0.984) TCGA-FW-A3R5-06 1 156247733 156247733 T A SMG5 Missense_Mutation p.I94F 0.27 deleterious(0.01) benign(0.127) TCGA-FW-A3R5-06 1 156264762 156264762 G A C1orf85 Silent p.L56L 0.12 TCGA-FW-A3R5-06 1 156294849 156294849 G A CCT3 Silent p.F112F 0.17 TCGA-FW-A3R5-06 1 156351641 156351641 G A RHBG Silent p.G295G 0.26 TCGA-FW-A3R5-06 1 156351651 156351651 G A RHBG Missense_Mutation p.E299K 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 156352443 156352443 C T RHBG Intron 0.26 TCGA-FW-A3R5-06 1 156376660 156376660 G A C1orf61 Intron 0.41 TCGA-FW-A3R5-06 1 156437357 156437357 G A MEF2D 3'UTR 0.32 TCGA-FW-A3R5-06 1 156437425 156437425 G A MEF2D 3'UTR 0.07 TCGA-FW-A3R5-06 1 156496304 156496304 G A IQGAP3 Missense_Mutation p.L1624F 0.19 deleterious(0) unknown(0) TCGA-FW-A3R5-06 1 156498719 156498719 G A IQGAP3 Silent p.A1520A 0.17 TCGA-FW-A3R5-06 1 156536235 156536235 G A IQGAP3 Missense_Mutation p.P77S 0.14 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 1 156554962 156554962 G A TTC24 Silent p.Q465Q 0.39 TCGA-FW-A3R5-06 1 156555535 156555535 C T TTC24 Missense_Mutation p.S496L 0.29 tolerated_low_confidence(0.18) benign(0.028) TCGA-FW-A3R5-06 1 156622703 156622703 C T BCAN Intron 0.38 TCGA-FW-A3R5-06 1 156640282 156640282 G A NES Missense_Mutation p.P1233L 0.32 tolerated(0.28) benign(0.086) TCGA-FW-A3R5-06 1 156642416 156642416 C T NES Missense_Mutation p.E522K 0.11 tolerated(0.18) benign(0.035) TCGA-FW-A3R5-06 1 156642565 156642565 G A NES Missense_Mutation p.P472L 0.10 tolerated(0.1) benign(0.048) TCGA-FW-A3R5-06 1 156642586 156642586 G A NES Missense_Mutation p.S465F 0.28 deleterious(0.03) probably_damaging(0.935) TCGA-FW-A3R5-06 1 156646890 156646890 G A NES Missense_Mutation p.A56V 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 1 156697137 156697137 G A ISG20L2 Missense_Mutation p.P103L 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 156756843 156756843 C T PRCC Silent p.P320P 0.31 TCGA-FW-A3R5-06 1 156761529 156761529 C T PRCC Missense_Mutation p.A375V 0.18 deleterious(0.03) possibly_damaging(0.835) TCGA-FW-A3R5-06 1 156785878 156785878 C T SH2D2A Missense_Mutation p.E15K 0.11 tolerated(0.6) benign(0.001) TCGA-FW-A3R5-06 1 156810752 156810752 C T INSRR Silent p.R1269R 0.21 TCGA-FW-A3R5-06 1 156811288 156811288 G A INSRR Missense_Mutation p.T1187I 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 156812901 156812901 G A INSRR Silent p.S1007S 0.24 TCGA-FW-A3R5-06 1 156814576 156814576 G A INSRR Missense_Mutation p.L833F 0.28 tolerated(0.78) benign(0.016) TCGA-FW-A3R5-06 1 156815774 156815774 C T INSRR Missense_Mutation p.D650N 0.35 tolerated(0.19) possibly_damaging(0.669) TCGA-FW-A3R5-06 1 156816391 156816391 G A INSRR Missense_Mutation p.A577V 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 1 156816441 156816441 C T INSRR Silent p.V560V 0.12 TCGA-FW-A3R5-06 1 156819153 156819153 G A INSRR Silent p.A443A 0.29 TCGA-FW-A3R5-06 1 156828383 156828383 C T INSRR Missense_Mutation p.A11T 0.27 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 1 156828453 156828453 C T INSRR 5'UTR 0.27 TCGA-FW-A3R5-06 1 156834179 156834179 G A NTRK1 Silent p.L82L 0.28 TCGA-FW-A3R5-06 1 156834207 156834207 G A NTRK1 Missense_Mutation p.E92K 0.29 tolerated(0.32) benign(0.001) TCGA-FW-A3R5-06 1 156845925 156845925 G A NTRK1 Missense_Mutation p.G519S 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 156875149 156875149 G A PEAR1 Silent p.V80V 0.20 TCGA-FW-A3R5-06 1 156877930 156877930 G A PEAR1 Missense_Mutation p.E305K 0.22 deleterious(0.02) benign(0.354) TCGA-FW-A3R5-06 1 156882382 156882382 C T PEAR1 Missense_Mutation p.P726L 0.27 tolerated(0.1) benign(0.089) TCGA-FW-A3R5-06 1 156909560 156909560 G A ARHGEF11 Silent p.S1292S 0.27 TCGA-FW-A3R5-06 1 156917205 156917205 G A ARHGEF11 Silent p.L793L 0.37 TCGA-FW-A3R5-06 1 156937867 156937867 G A ARHGEF11 Missense_Mutation p.P292L 0.47 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 156955916 156955916 G T ARHGEF11 Missense_Mutation p.P28T 0.28 deleterious(0.01) benign(0.287) TCGA-FW-A3R5-06 1 157485415 157485415 G A FCRL5 3'UTR 0.26 TCGA-FW-A3R5-06 1 157485638 157485638 C T FCRL5 Silent p.R946R 0.32 TCGA-FW-A3R5-06 1 157494322 157494322 G A FCRL5 Silent p.T662T 0.38 TCGA-FW-A3R5-06 1 157497642 157497642 G A FCRL5 Silent p.A575A 0.23 TCGA-FW-A3R5-06 1 157504281 157504281 G A FCRL5 Intron 0.29 TCGA-FW-A3R5-06 1 157509152 157509152 G A FCRL5 Missense_Mutation p.P376S 0.22 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 157514069 157514069 G A FCRL5 Missense_Mutation p.S276F 0.22 tolerated(0.7) benign(0.118) TCGA-FW-A3R5-06 1 157516898 157516898 G A FCRL5 Missense_Mutation p.R48C 0.27 tolerated(0.06) possibly_damaging(0.773) TCGA-FW-A3R5-06 1 157557700 157557700 C T FCRL4 Missense_Mutation p.E173K 0.40 tolerated(1) benign(0) TCGA-FW-A3R5-06 1 157648592 157648592 C T FCRL3 Missense_Mutation p.G705R 0.27 tolerated(0.36) benign(0.006) TCGA-FW-A3R5-06 1 157650834 157650834 G A FCRL3 Missense_Mutation p.P632S 0.30 tolerated(0.39) benign(0.156) TCGA-FW-A3R5-06 1 157659643 157659643 G A FCRL3 Silent p.L585L 0.37 TCGA-FW-A3R5-06 1 157665230 157665230 C T FCRL3 Missense_Mutation p.G434R 0.23 tolerated(0.15) possibly_damaging(0.656) TCGA-FW-A3R5-06 1 157666195 157666195 G A FCRL3 Intron 0.24 TCGA-FW-A3R5-06 1 157667107 157667107 G A FCRL3 Nonsense_Mutation p.Q223* 0.35 TCGA-FW-A3R5-06 1 157667199 157667199 G A FCRL3 Missense_Mutation p.P192L 0.13 deleterious(0.02) probably_damaging(0.914) TCGA-FW-A3R5-06 1 157667325 157667325 G A FCRL3 Intron 0.31 TCGA-FW-A3R5-06 1 157667561 157667561 G A FCRL3 Silent p.I149I 0.29 TCGA-FW-A3R5-06 1 157669500 157669500 G A FCRL3 Missense_Mutation p.P12S 0.29 tolerated(0.06) probably_damaging(0.988) TCGA-FW-A3R5-06 1 15766993 15766993 C T CTRC Missense_Mutation p.S46F 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 157737078 157737078 C T FCRL2 Missense_Mutation p.E369K 0.19 tolerated(0.1) possibly_damaging(0.808) TCGA-FW-A3R5-06 1 157737198 157737198 G A FCRL2 Missense_Mutation p.P329S 0.29 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 1 157737512 157737512 G A FCRL2 Intron 0.24 TCGA-FW-A3R5-06 1 157740417 157740417 C T FCRL2 Missense_Mutation p.G31E 0.10 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 1 157771953 157771953 C T FCRL1 Missense_Mutation p.R213K 0.39 tolerated(0.25) benign(0.192) TCGA-FW-A3R5-06 1 157772251 157772251 C T FCRL1 Missense_Mutation p.E175K 0.27 tolerated(0.1) possibly_damaging(0.6) TCGA-FW-A3R5-06 1 157789831 157789831 G A FCRL1 5'UTR 0.21 TCGA-FW-A3R5-06 1 157803081 157803081 G A CD5L Missense_Mutation p.R314C 0.34 deleterious(0.04) benign(0.027) TCGA-FW-A3R5-06 1 157803146 157803146 G A CD5L Missense_Mutation p.S292F 0.10 tolerated(0.81) benign(0.01) TCGA-FW-A3R5-06 1 157804377 157804377 C T CD5L Missense_Mutation p.G180R 0.21 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 157805786 157805786 C T CD5L Missense_Mutation p.G72E 0.10 tolerated(0.61) benign(0.055) TCGA-FW-A3R5-06 1 157805787 157805787 C T CD5L Missense_Mutation p.G72R 0.10 tolerated(0.35) benign(0.04) TCGA-FW-A3R5-06 1 15789234 15789234 C T CELA2A Silent p.S78S 0.28 TCGA-FW-A3R5-06 1 15789950 15789950 C T CELA2A Silent p.L142L 0.32 TCGA-FW-A3R5-06 1 158151263 158151263 C T CD1D Missense_Mutation p.P27L 0.27 tolerated(0.14) benign(0.118) TCGA-FW-A3R5-06 1 158151911 158151911 G A CD1D Missense_Mutation p.D140N 0.05 deleterious(0.04) benign(0.012) TCGA-FW-A3R5-06 1 158151916 158151916 C T CD1D Silent p.I141I 0.37 TCGA-FW-A3R5-06 1 158152041 158152041 C T CD1D Missense_Mutation p.T183I 0.20 tolerated(0.22) benign(0.056) TCGA-FW-A3R5-06 1 158224974 158224974 G A CD1A Silent p.Q53Q 0.20 TCGA-FW-A3R5-06 1 158225851 158225851 G A CD1A Missense_Mutation p.G128E 0.21 tolerated(1) probably_damaging(0.926) TCGA-FW-A3R5-06 1 158226026 158226026 C T CD1A Silent p.F186F 0.23 TCGA-FW-A3R5-06 1 158226032 158226032 G A CD1A Silent p.L188L 0.18 TCGA-FW-A3R5-06 1 158226033 158226033 G A CD1A Missense_Mutation p.G189S 0.18 tolerated(0.34) probably_damaging(0.993) TCGA-FW-A3R5-06 1 158226733 158226733 C T CD1A Silent p.P254P 0.17 TCGA-FW-A3R5-06 1 158259745 158259745 G A CD1C 5'UTR 0.37 TCGA-FW-A3R5-06 1 158259858 158259858 C T CD1C Silent p.L2L 0.25 TCGA-FW-A3R5-06 1 158262543 158262543 T C CD1C Silent p.P256P 0.31 TCGA-FW-A3R5-06 1 158299230 158299230 C T CD1B Silent p.G272G 0.27 TCGA-FW-A3R5-06 1 158325254 158325254 C T CD1E Missense_Mutation p.R174C 0.31 deleterious(0.02) benign(0.33) TCGA-FW-A3R5-06 1 158325305 158325305 C T CD1E Missense_Mutation p.P191S 0.08 deleterious(0.01) benign(0.317) TCGA-FW-A3R5-06 1 158325940 158325940 C T CD1E Intron 0.24 TCGA-FW-A3R5-06 1 158326430 158326430 C T CD1E Intron 0.47 TCGA-FW-A3R5-06 1 158326659 158326659 G A CD1E Nonsense_Mutation p.W380* 0.19 TCGA-FW-A3R5-06 1 158368677 158368677 G A OR10T2 Missense_Mutation p.H194Y 0.25 tolerated(1) benign(0.362) TCGA-FW-A3R5-06 1 158368777 158368777 G A OR10T2 Silent p.A160A 0.30 TCGA-FW-A3R5-06 1 158369140 158369140 G A OR10T2 Silent p.I39I 0.39 TCGA-FW-A3R5-06 1 158389857 158389857 G A OR10K2 Missense_Mutation p.S267F 0.25 deleterious(0.03) benign(0.03) TCGA-FW-A3R5-06 1 158435398 158435398 G A OR10K1 Missense_Mutation p.G16D 0.15 deleterious(0) possibly_damaging(0.901) TCGA-FW-A3R5-06 1 158435691 158435691 C T OR10K1 Silent p.L114L 0.17 TCGA-FW-A3R5-06 1 158435835 158435835 C T OR10K1 Silent p.L162L 0.27 TCGA-FW-A3R5-06 1 15844812 15844812 G A CASP9 Missense_Mutation p.P71S 0.25 tolerated(0.11) possibly_damaging(0.702) TCGA-FW-A3R5-06 1 158450081 158450081 G A OR10R2 Missense_Mutation p.M138I 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-FW-A3R5-06 1 158450355 158450355 C T OR10R2 Missense_Mutation p.P230S 0.19 tolerated(0.23) probably_damaging(0.923) TCGA-FW-A3R5-06 1 158450377 158450377 C T OR10R2 Missense_Mutation p.S237F 0.20 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 158450542 158450542 G A OR10R2 Missense_Mutation p.R292K 0.24 tolerated(0.23) benign(0.081) TCGA-FW-A3R5-06 1 158548779 158548779 C T OR10X1 Missense_Mutation p.S304N 0.33 deleterious(0.01) possibly_damaging(0.603) TCGA-FW-A3R5-06 1 158549183 158549183 G A OR10X1 Silent p.F169F 0.33 TCGA-FW-A3R5-06 1 158576322 158576322 C T OR10Z1 Missense_Mutation p.L32F 0.28 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 1 158577134 158577134 G A OR10Z1 Silent p.R302R 0.28 TCGA-FW-A3R5-06 1 158577148 158577148 G A OR10Z1 Missense_Mutation p.G307E 0.27 tolerated(0.18) benign(0.172) TCGA-FW-A3R5-06 1 158581078 158581078 G A SPTA1 Silent p.F2412F 0.25 TCGA-FW-A3R5-06 1 158583514 158583514 C T SPTA1 Missense_Mutation p.G2329E 0.40 deleterious(0.04) benign(0.008) TCGA-FW-A3R5-06 1 158585167 158585167 C T SPTA1 Missense_Mutation p.M2209I 0.30 tolerated(0.06) possibly_damaging(0.683) TCGA-FW-A3R5-06 1 158587369 158587369 G A SPTA1 Silent p.L2186L 0.32 TCGA-FW-A3R5-06 1 158589027 158589027 C T SPTA1 Nonsense_Mutation p.W2172* 0.32 TCGA-FW-A3R5-06 1 158589991 158589991 C T SPTA1 Missense_Mutation p.R2129K 0.17 tolerated(0.2) benign(0.015) TCGA-FW-A3R5-06 1 158590148 158590148 C T SPTA1 Missense_Mutation p.E2077K 0.33 deleterious(0) possibly_damaging(0.489) TCGA-FW-A3R5-06 1 158596730 158596730 G A SPTA1 Missense_Mutation p.P1911L 0.30 tolerated(0.17) benign(0.446) TCGA-FW-A3R5-06 1 158596785 158596785 C T SPTA1 Missense_Mutation p.E1893K 0.23 tolerated(0.49) benign(0.015) TCGA-FW-A3R5-06 1 158607824 158607824 C T SPTA1 Missense_Mutation p.E1730K 0.25 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 1 158607836 158607836 C T SPTA1 Missense_Mutation p.E1726K 0.06 deleterious(0.04) possibly_damaging(0.515) TCGA-FW-A3R5-06 1 158607975 158607975 G A SPTA1 Silent p.F1679F 0.37 TCGA-FW-A3R5-06 1 158608031 158608031 C T SPTA1 Missense_Mutation p.D1661N 0.24 deleterious(0) possibly_damaging(0.781) TCGA-FW-A3R5-06 1 158609381 158609381 C T SPTA1 Silent p.L1657L 0.14 TCGA-FW-A3R5-06 1 158609717 158609717 G A SPTA1 Silent p.A1606A 0.26 TCGA-FW-A3R5-06 1 158614085 158614085 C T SPTA1 Silent p.L1432L 0.30 TCGA-FW-A3R5-06 1 158618317 158618317 G A SPTA1 Silent p.L1232L 0.53 TCGA-FW-A3R5-06 1 158623135 158623135 G A SPTA1 Silent p.F1039F 0.31 TCGA-FW-A3R5-06 1 158627485 158627485 C T SPTA1 Splice_Site p.X863_splice 0.25 TCGA-FW-A3R5-06 1 158637664 158637664 C T SPTA1 Silent p.E674E 0.28 TCGA-FW-A3R5-06 1 158641160 158641160 G A SPTA1 Silent p.A524A 0.16 TCGA-FW-A3R5-06 1 158644199 158644199 C T SPTA1 Missense_Mutation p.D424N 0.30 tolerated(0.05) benign(0.05) TCGA-FW-A3R5-06 1 158669801 158669801 G A OR6K2 Silent p.L214L 0.35 TCGA-FW-A3R5-06 1 158669833 158669833 G A OR6K2 Missense_Mutation p.H204Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 158724951 158724951 G A OR6K6 Missense_Mutation p.E116K 0.29 tolerated(0.23) benign(0.008) TCGA-FW-A3R5-06 1 158725176 158725176 A T OR6K6 Missense_Mutation p.I191F 0.34 deleterious(0.02) possibly_damaging(0.9) TCGA-FW-A3R5-06 1 158735998 158735998 C T OR6N1 Missense_Mutation p.E159K 0.31 deleterious(0.02) probably_damaging(0.968) TCGA-FW-A3R5-06 1 158746540 158746540 C T OR6N2 Missense_Mutation p.E296K 0.20 deleterious(0.01) benign(0.049) TCGA-FW-A3R5-06 1 158746637 158746637 C T OR6N2 Silent p.K263K 0.31 TCGA-FW-A3R5-06 1 15874796 15874796 C T DNAJC16 Missense_Mutation p.S299L 0.27 tolerated(0.19) benign(0.002) TCGA-FW-A3R5-06 1 15874868 15874868 C T DNAJC16 Missense_Mutation p.A323V 0.22 tolerated(0.18) benign(0.007) TCGA-FW-A3R5-06 1 158815650 158815650 G A MNDA Missense_Mutation p.E282K 0.26 tolerated(0.23) benign(0.072) TCGA-FW-A3R5-06 1 158815653 158815653 G A MNDA Missense_Mutation p.A283T 0.31 tolerated(0.59) benign(0.122) TCGA-FW-A3R5-06 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.29 tolerated(1) benign(0) TCGA-FW-A3R5-06 1 158908993 158908993 C T PYHIN1 Missense_Mutation p.P179S 0.25 tolerated(0.13) benign(0.241) TCGA-FW-A3R5-06 1 158911994 158911994 C T PYHIN1 Silent p.I269I 0.21 TCGA-FW-A3R5-06 1 158914789 158914789 C T PYHIN1 Missense_Mutation p.P439L 0.23 tolerated(0.39) benign(0.008) TCGA-FW-A3R5-06 1 15905504 15905504 C T AGMAT Silent p.T190T 0.23 TCGA-FW-A3R5-06 1 15909693 15909693 G A AGMAT Missense_Mutation p.T157I 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 1 159163754 159163754 G A CADM3 Silent p.A239A 0.33 TCGA-FW-A3R5-06 1 159166837 159166837 C T CADM3 Silent p.T347T 0.26 TCGA-FW-A3R5-06 1 159170684 159170684 G A CADM3 Missense_Mutation p.G424E 0.15 deleterious(0.01) probably_damaging(0.963) TCGA-FW-A3R5-06 1 159170685 159170685 G A CADM3 Silent p.G424G 0.16 TCGA-FW-A3R5-06 1 159170712 159170712 G A CADM3 Silent p.%3D 0.09 TCGA-FW-A3R5-06 1 159174755 159174755 G A DARC 5'Flank 0.27 TCGA-FW-A3R5-06 1 159175467 159175467 C T DARC Missense_Mutation p.L82F 0.07 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 159175742 159175742 G A DARC Silent p.V173V 0.16 TCGA-FW-A3R5-06 1 159273855 159273855 G A FCER1A Missense_Mutation p.E72K 0.30 tolerated(0.87) benign(0.007) TCGA-FW-A3R5-06 1 159283541 159283541 C T OR10J3 Silent p.Q303Q 0.31 TCGA-FW-A3R5-06 1 159284211 159284211 G A OR10J3 Missense_Mutation p.P80L 0.29 deleterious(0.01) possibly_damaging(0.555) TCGA-FW-A3R5-06 1 159284432 159284432 G A OR10J3 Silent p.S6S 0.28 TCGA-FW-A3R5-06 1 159284448 159284448 A C OR10J3 Translation_Start_Site p.M1? 0.19 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3R5-06 1 159410142 159410142 C T OR10J1 Silent p.S198S 0.31 TCGA-FW-A3R5-06 1 159504872 159504872 G A OR10J5 Missense_Mutation p.S309F 0.31 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 1 159505354 159505354 G A OR10J5 Silent p.S148S 0.26 TCGA-FW-A3R5-06 1 159505396 159505396 G A OR10J5 Silent p.V134V 0.31 TCGA-FW-A3R5-06 1 159558247 159558247 G A APCS Missense_Mutation p.G141S 0.15 deleterious(0) possibly_damaging(0.829) TCGA-FW-A3R5-06 1 159558607 159558607 C T APCS 3'UTR 0.25 TCGA-FW-A3R5-06 1 159683513 159683513 G A CRP Silent p.S159S 0.27 TCGA-FW-A3R5-06 1 159683514 159683514 G A CRP Missense_Mutation p.S159F 0.27 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 1 159683765 159683765 C T CRP Silent p.K75K 0.22 TCGA-FW-A3R5-06 1 159683778 159683778 G A CRP Missense_Mutation p.S71L 0.27 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 1 159778902 159778902 G A FCRL6 Silent p.Q157Q 0.17 TCGA-FW-A3R5-06 1 159778947 159778947 G A FCRL6 Silent p.E172E 0.20 TCGA-FW-A3R5-06 1 15978206 15978206 C T DDI2 Silent p.S333S 0.23 TCGA-FW-A3R5-06 1 159783292 159783292 C T FCRL6 Silent p.S341S 0.21 TCGA-FW-A3R5-06 1 159784074 159784074 G A FCRL6 Missense_Mutation p.R380K 0.35 tolerated(0.88) benign(0.001) TCGA-FW-A3R5-06 1 159785469 159785469 C T FCRL6 3'Flank 0.39 TCGA-FW-A3R5-06 1 159785506 159785506 G A FCRL6 3'Flank 0.19 TCGA-FW-A3R5-06 1 159785573 159785573 C T FCRL6 3'Flank 0.47 TCGA-FW-A3R5-06 1 159799809 159799809 G A SLAMF8 Missense_Mutation p.R65Q 0.33 tolerated(0.31) benign(0.013) TCGA-FW-A3R5-06 1 159802914 159802914 C T SLAMF8 Missense_Mutation p.P206S 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-FW-A3R5-06 1 159860290 159860290 C T CCDC19 Silent p.R84R 0.12 TCGA-FW-A3R5-06 1 159890198 159890198 G A TAGLN2 Silent p.I34I 0.25 TCGA-FW-A3R5-06 1 159907607 159907607 C T IGSF9 Missense_Mutation p.G90E 0.08 deleterious(0.01) probably_damaging(0.938) TCGA-FW-A3R5-06 1 159912807 159912807 G A IGSF9 Missense_Mutation p.P65S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 159921323 159921323 C T SLAMF9 3'UTR 0.33 TCGA-FW-A3R5-06 1 159921563 159921563 C T SLAMF9 Missense_Mutation p.G253E 0.33 deleterious(0.01) possibly_damaging(0.839) TCGA-FW-A3R5-06 1 159922231 159922231 C T SLAMF9 Missense_Mutation p.G162D 0.40 tolerated(0.16) probably_damaging(0.918) TCGA-FW-A3R5-06 1 159923977 159923977 G A SLAMF9 5'UTR 0.19 TCGA-FW-A3R5-06 1 160062981 160062981 G A IGSF8 Missense_Mutation p.P349S 0.27 tolerated(0.7) probably_damaging(0.998) TCGA-FW-A3R5-06 1 160093842 160093842 C T ATP1A2 Missense_Mutation p.P164L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 160094107 160094107 G A ATP1A2 Missense_Mutation p.G173R 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 160094972 160094972 C T ATP1A2 Missense_Mutation p.S226F 0.30 deleterious(0.01) possibly_damaging(0.882) TCGA-FW-A3R5-06 1 160100247 160100247 C T ATP1A2 Missense_Mutation p.P563S 0.09 tolerated(0.1) benign(0.099) TCGA-FW-A3R5-06 1 160100331 160100331 C T ATP1A2 Missense_Mutation p.P591S 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 160106098 160106098 G A ATP1A2 Missense_Mutation p.R834Q 0.32 deleterious(0.01) possibly_damaging(0.835) TCGA-FW-A3R5-06 1 160109728 160109728 C T ATP1A2 Silent p.F996F 0.21 TCGA-FW-A3R5-06 1 160109743 160109743 C T ATP1A2 Silent p.V1001V 0.18 TCGA-FW-A3R5-06 1 160109744 160109744 C T ATP1A2 Nonsense_Mutation p.R1002* 0.19 TCGA-FW-A3R5-06 1 160141071 160141071 C T ATP1A4 Nonsense_Mutation p.Q508* 0.26 TCGA-FW-A3R5-06 1 160141149 160141149 G A ATP1A4 Missense_Mutation p.E534K 0.28 deleterious(0.02) benign(0.124) TCGA-FW-A3R5-06 1 160147345 160147345 T G ATP1A4 Missense_Mutation p.F876C 0.26 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 160171275 160171275 G A CASQ1 3'UTR 0.29 TCGA-FW-A3R5-06 1 160313082 160313082 C T NCSTN 5'UTR 0.27 TCGA-FW-A3R5-06 1 160319892 160319892 C T NCSTN Intron 0.27 TCGA-FW-A3R5-06 1 160458917 160458917 C T SLAMF6 Silent p.T280T 0.30 TCGA-FW-A3R5-06 1 160459991 160459991 G A SLAMF6 Missense_Mutation p.P265S 0.23 tolerated(0.15) benign(0.006) TCGA-FW-A3R5-06 1 160465879 160465879 C T SLAMF6 Silent p.K118K 0.29 TCGA-FW-A3R5-06 1 160520779 160520779 C T CD84 Silent p.R286R 0.18 TCGA-FW-A3R5-06 1 160580500 160580500 C T SLAMF1 3'UTR 0.37 TCGA-FW-A3R5-06 1 160607071 160607071 C T SLAMF1 Missense_Mutation p.E109K 0.26 tolerated(0.34) benign(0.016) TCGA-FW-A3R5-06 1 160648910 160648910 C T CD48 Missense_Mutation p.G222R 0.25 deleterious(0.03) benign(0.287) TCGA-FW-A3R5-06 1 160654665 160654665 C T CD48 Intron 0.26 TCGA-FW-A3R5-06 1 16069654 16069654 C T TMEM82 Missense_Mutation p.L101F 0.33 deleterious(0.01) benign(0.333) TCGA-FW-A3R5-06 1 160719701 160719701 G A SLAMF7 Missense_Mutation p.G156E 0.26 tolerated(0.24) benign(0.21) TCGA-FW-A3R5-06 1 160719870 160719870 G A SLAMF7 Silent p.R212R 0.24 TCGA-FW-A3R5-06 1 16074149 16074149 A T TMEM82 3'UTR 0.31 TCGA-FW-A3R5-06 1 160766091 160766091 C T LY9 Silent p.F38F 0.17 TCGA-FW-A3R5-06 1 160783618 160783618 C T LY9 Missense_Mutation p.P216L 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-FW-A3R5-06 1 160784397 160784397 G A LY9 Silent p.R306R 0.10 TCGA-FW-A3R5-06 1 160786439 160786439 C T LY9 Silent p.I376I 0.27 TCGA-FW-A3R5-06 1 160788098 160788098 G A LY9 Missense_Mutation p.R478Q 0.08 tolerated(1) benign(0) TCGA-FW-A3R5-06 1 160789114 160789114 C T LY9 Missense_Mutation p.S483L 0.31 deleterious(0.01) benign(0.152) TCGA-FW-A3R5-06 1 160793318 160793318 C T LY9 Missense_Mutation p.P521L 0.33 tolerated(0.5) benign(0.002) TCGA-FW-A3R5-06 1 160797765 160797765 G A LY9 3'UTR 0.40 TCGA-FW-A3R5-06 1 160802361 160802361 C T CD244 Missense_Mutation p.G327E 0.28 tolerated(0.43) benign(0.105) TCGA-FW-A3R5-06 1 160808825 160808825 G A CD244 Missense_Mutation p.P229S 0.27 tolerated(0.47) benign(0.011) TCGA-FW-A3R5-06 1 160811241 160811241 C T CD244 Silent p.G143G 0.28 TCGA-FW-A3R5-06 1 160846438 160846438 C T ITLN1 3'UTR 0.32 TCGA-FW-A3R5-06 1 160849133 160849133 C T ITLN1 Missense_Mutation p.G253R 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 160850442 160850442 G A ITLN1 Silent p.I207I 0.29 TCGA-FW-A3R5-06 1 160851014 160851014 G A ITLN1 Missense_Mutation p.S165F 0.34 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 1 160853249 160853249 C T ITLN1 Silent p.K42K 0.23 TCGA-FW-A3R5-06 1 160915040 160915040 G A ITLN2 Missense_Mutation p.R290C 0.37 tolerated(0.06) benign(0.258) TCGA-FW-A3R5-06 1 160915041 160915041 G A ITLN2 Silent p.P289P 0.38 TCGA-FW-A3R5-06 1 16091552 16091552 C T FBLIM1 Missense_Mutation p.A25V 0.34 tolerated(0.07) possibly_damaging(0.623) TCGA-FW-A3R5-06 1 16091602 16091602 C T FBLIM1 Missense_Mutation p.P42S 0.33 deleterious(0.03) possibly_damaging(0.878) TCGA-FW-A3R5-06 1 160917778 160917778 C T ITLN2 Missense_Mutation p.E256K 0.10 deleterious(0.04) possibly_damaging(0.803) TCGA-FW-A3R5-06 1 160917803 160917803 G A ITLN2 Silent p.F247F 0.23 TCGA-FW-A3R5-06 1 160920888 160920888 C T ITLN2 Nonsense_Mutation p.W129* 0.26 TCGA-FW-A3R5-06 1 160921009 160921009 C T ITLN2 Missense_Mutation p.G89S 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 160969689 160969689 G A F11R Missense_Mutation p.S224L 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 1 16097048 16097048 G A FBLIM1 Missense_Mutation p.R229Q 0.29 tolerated(0.14) probably_damaging(0.947) TCGA-FW-A3R5-06 1 160970835 160970835 G A F11R Silent p.L72L 0.36 TCGA-FW-A3R5-06 1 161018525 161018525 C T ARHGAP30 Silent p.Q762Q 0.11 TCGA-FW-A3R5-06 1 161018533 161018533 C T ARHGAP30 Missense_Mutation p.E760K 0.28 tolerated_low_confidence(0.07) benign(0.002) TCGA-FW-A3R5-06 1 161018992 161018992 C T ARHGAP30 Missense_Mutation p.E607K 0.31 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 1 161019326 161019326 C T ARHGAP30 Missense_Mutation p.G525E 0.22 tolerated(0.16) possibly_damaging(0.472) TCGA-FW-A3R5-06 1 161021355 161021355 C T ARHGAP30 Missense_Mutation p.R390Q 0.31 tolerated(0.08) benign(0.048) TCGA-FW-A3R5-06 1 161022284 161022284 C T ARHGAP30 Missense_Mutation p.G296S 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 1 161039388 161039388 C T ARHGAP30 Silent p.K9K 0.33 TCGA-FW-A3R5-06 1 161044144 161044144 C T PVRL4 Silent p.G340G 0.32 TCGA-FW-A3R5-06 1 161049422 161049422 G A PVRL4 Missense_Mutation p.P133S 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 16111221 16111221 C T FBLIM1 3'UTR 0.15 TCGA-FW-A3R5-06 1 161130934 161130934 C T USP21 Silent p.T168T 0.29 TCGA-FW-A3R5-06 1 161180451 161180451 C T NDUFS2 Nonsense_Mutation p.Q313* 0.19 TCGA-FW-A3R5-06 1 161180608 161180608 C T NDUFS2 Intron 0.41 TCGA-FW-A3R5-06 1 161188701 161188701 G A FCER1G Missense_Mutation p.E77K 0.24 deleterious(0.01) possibly_damaging(0.585) TCGA-FW-A3R5-06 1 161193180 161193180 G A APOA2 Silent p.L4L 0.22 TCGA-FW-A3R5-06 1 161196322 161196322 C T TOMM40L Missense_Mutation p.R15C 0.20 deleterious(0.05) possibly_damaging(0.551) TCGA-FW-A3R5-06 1 161199025 161199025 C T TOMM40L 3'UTR 0.31 TCGA-FW-A3R5-06 1 161205715 161205715 C T NR1I3 Missense_Mutation p.E54K 0.18 tolerated(0.4) benign(0.012) TCGA-FW-A3R5-06 1 161207919 161207919 C T NR1I3 5'UTR 0.32 TCGA-FW-A3R5-06 1 161275645 161275645 C T MPZ 3'UTR 0.40 TCGA-FW-A3R5-06 1 161276165 161276165 G A MPZ Missense_Mutation p.R180W 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 161334873 161334873 C T C1orf192 Missense_Mutation p.R139Q 0.26 tolerated_low_confidence(0.05) benign(0) TCGA-FW-A3R5-06 1 161488750 161488750 C T FCGR2A 3'UTR 0.26 TCGA-FW-A3R5-06 1 161514664 161514664 G A FCGR3A Missense_Mutation p.A171V 0.23 deleterious(0.05) benign(0.006) TCGA-FW-A3R5-06 1 161519511 161519511 G A FCGR3A Missense_Mutation p.L42F 0.24 tolerated(0.2) possibly_damaging(0.878) TCGA-FW-A3R5-06 1 161561143 161561143 G A FCGR2C 5'Flank 0.48 TCGA-FW-A3R5-06 1 161569556 161569556 C T FCGR2C Intron 0.35 TCGA-FW-A3R5-06 1 161641278 161641278 C T FCGR2B Missense_Mutation p.P77L 0.19 tolerated(0.09) possibly_damaging(0.499) TCGA-FW-A3R5-06 1 161642919 161642919 C T FCGR2B Silent p.S182S 0.23 TCGA-FW-A3R5-06 1 161683241 161683241 C T FCRLA 3'UTR 0.32 TCGA-FW-A3R5-06 1 161722918 161722918 C T DUSP12 Missense_Mutation p.P243L 0.29 tolerated(0.06) benign(0.027) TCGA-FW-A3R5-06 1 161753803 161753803 C T ATF6 Nonsense_Mutation p.Q91* 0.20 TCGA-FW-A3R5-06 1 161821579 161821579 C T ATF6 Missense_Mutation p.P463S 0.28 tolerated(0.29) benign(0.139) TCGA-FW-A3R5-06 1 161954026 161954026 G A OLFML2B Silent p.I564I 0.22 TCGA-FW-A3R5-06 1 16199342 16199342 C T SPEN Missense_Mutation p.P39S 0.29 probably_damaging(1) TCGA-FW-A3R5-06 1 162270444 162270444 G A NOS1AP Missense_Mutation p.E98K 0.23 tolerated(0.08) benign(0.102) TCGA-FW-A3R5-06 1 162344300 162344300 C T C1orf111 Silent p.E108E 0.27 TCGA-FW-A3R5-06 1 16235856 16235856 C T SPEN Nonsense_Mutation p.R308* 0.07 TCGA-FW-A3R5-06 1 162368759 162368759 G A SH2D1B Missense_Mutation p.P106L 0.31 tolerated(0.35) benign(0.002) TCGA-FW-A3R5-06 1 162368760 162368760 G A SH2D1B Missense_Mutation p.P106S 0.32 tolerated(0.48) benign(0.003) TCGA-FW-A3R5-06 1 16256058 16256058 C T SPEN Missense_Mutation p.P1108L 0.23 benign(0.075) TCGA-FW-A3R5-06 1 16256617 16256617 C T SPEN Silent p.V1294V 0.26 TCGA-FW-A3R5-06 1 16256942 16256942 C T SPEN Nonsense_Mutation p.R1403* 0.37 TCGA-FW-A3R5-06 1 162729659 162729659 C T DDR2 Missense_Mutation p.H249Y 0.17 tolerated(0.34) benign(0.222) TCGA-FW-A3R5-06 1 163042253 163042253 C T RGS4 Missense_Mutation p.S135F 0.30 deleterious(0.02) benign(0.05) TCGA-FW-A3R5-06 1 163117238 163117238 G A RGS5 Missense_Mutation p.S151F 0.26 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 1 163122409 163122409 G A RGS5 Silent p.S105S 0.21 TCGA-FW-A3R5-06 1 16332591 16332591 A G C1orf64 Missense_Mutation p.E87G 0.36 tolerated(0.22) benign(0.013) TCGA-FW-A3R5-06 1 16342046 16342046 G A HSPB7 3'UTR 0.42 TCGA-FW-A3R5-06 1 16351295 16351295 C T CLCNKA Silent p.H89H 0.28 TCGA-FW-A3R5-06 1 16354330 16354330 C T CLCNKA Missense_Mutation p.L266F 0.19 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 1 16354361 16354361 C T CLCNKA Missense_Mutation p.P276L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 16355714 16355714 G A CLCNKA Missense_Mutation p.D383N 0.28 deleterious(0.04) benign(0.104) TCGA-FW-A3R5-06 1 16360108 16360108 G A CLCNKA Missense_Mutation p.M673I 0.21 deleterious(0.01) benign(0.103) TCGA-FW-A3R5-06 1 16373106 16373106 C T CLCNKB Silent p.A102A 0.22 TCGA-FW-A3R5-06 1 16376365 16376365 G A CLCNKB Missense_Mutation p.G308S 0.35 tolerated(0.73) benign(0.008) TCGA-FW-A3R5-06 1 16475029 16475029 G A EPHA2 Silent p.L223L 0.15 TCGA-FW-A3R5-06 1 16475030 16475030 G A EPHA2 Silent p.S222S 0.14 TCGA-FW-A3R5-06 1 16475031 16475031 G A EPHA2 Missense_Mutation p.S222F 0.23 deleterious(0) possibly_damaging(0.656) TCGA-FW-A3R5-06 1 16475061 16475061 G A EPHA2 Missense_Mutation p.P212L 0.31 deleterious(0) benign(0.203) TCGA-FW-A3R5-06 1 164761751 164761751 C T PBX1 Nonsense_Mutation p.Q96* 0.27 TCGA-FW-A3R5-06 1 164781252 164781252 G A PBX1 Missense_Mutation p.R288Q 0.27 deleterious(0.01) probably_damaging(0.909) TCGA-FW-A3R5-06 1 165175145 165175145 C T LMX1A Missense_Mutation p.G315D 0.32 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 1 165179969 165179969 G A LMX1A Silent p.V238V 0.34 TCGA-FW-A3R5-06 1 165179979 165179979 C T LMX1A Missense_Mutation p.S235N 0.12 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 1 165182897 165182897 G A LMX1A Missense_Mutation p.S217F 0.33 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 1 16528293 16528293 G A ARHGEF19 Silent p.V710V 0.20 TCGA-FW-A3R5-06 1 16532066 16532066 G A ARHGEF19 Silent p.F516F 0.27 TCGA-FW-A3R5-06 1 165370426 165370426 G A RXRG 3'UTR 0.20 TCGA-FW-A3R5-06 1 165378827 165378827 G A RXRG Silent p.A338A 0.30 TCGA-FW-A3R5-06 1 165386283 165386283 C T RXRG Missense_Mutation p.R206K 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 1 165513476 165513476 C T LRRC52 5'UTR 0.36 TCGA-FW-A3R5-06 1 165533037 165533037 C T LRRC52 Silent p.V306V 0.27 TCGA-FW-A3R5-06 1 165551093 165551093 C T RP11-280O1.2 RNA 0.38 TCGA-FW-A3R5-06 1 16558508 16558508 G A RSG1 3'UTR 0.21 TCGA-FW-A3R5-06 1 165652225 165652225 G A ALDH9A1 Silent p.S150S 0.35 TCGA-FW-A3R5-06 1 165697266 165697266 G A TMCO1 Silent p.F238F 0.23 TCGA-FW-A3R5-06 1 166039374 166039374 G A FAM78B 3'UTR 0.43 TCGA-FW-A3R5-06 1 166135291 166135291 G A FAM78B Silent p.T65T 0.33 TCGA-FW-A3R5-06 1 166135292 166135292 G A FAM78B Missense_Mutation p.T65I 0.31 tolerated(0.26) benign(0.225) TCGA-FW-A3R5-06 1 166891946 166891946 C T ILDR2 Silent p.G365G 0.15 TCGA-FW-A3R5-06 1 166896371 166896371 C T ILDR2 Missense_Mutation p.M309I 0.35 tolerated(0.08) probably_damaging(0.968) TCGA-FW-A3R5-06 1 166958589 166958589 C T MAEL 5'UTR 0.30 TCGA-FW-A3R5-06 1 166959017 166959017 G A MAEL Missense_Mutation p.R59Q 0.24 tolerated(0.15) probably_damaging(0.957) TCGA-FW-A3R5-06 1 166959042 166959042 G A MAEL Silent p.K67K 0.32 TCGA-FW-A3R5-06 1 166961934 166961934 G A MAEL Missense_Mutation p.G113S 0.32 tolerated(0.25) benign(0.001) TCGA-FW-A3R5-06 1 167032894 167032894 C T GPA33 Missense_Mutation p.E166K 0.24 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 1 167086743 167086743 G A DUSP27 Silent p.E128E 0.27 TCGA-FW-A3R5-06 1 167095218 167095218 G A DUSP27 Missense_Mutation p.E284K 0.17 tolerated(0.05) benign(0.231) TCGA-FW-A3R5-06 1 167095473 167095473 G A DUSP27 Missense_Mutation p.G369R 0.30 tolerated(0.27) benign(0.002) TCGA-FW-A3R5-06 1 167095870 167095870 G A DUSP27 Missense_Mutation p.R501K 0.32 tolerated(0.33) benign(0.002) TCGA-FW-A3R5-06 1 167096187 167096187 G A DUSP27 Missense_Mutation p.E607K 0.14 deleterious(0) possibly_damaging(0.637) TCGA-FW-A3R5-06 1 167096388 167096388 G A DUSP27 Missense_Mutation p.D674N 0.11 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 1 167096686 167096686 G A DUSP27 Missense_Mutation p.G773E 0.15 deleterious(0) possibly_damaging(0.776) TCGA-FW-A3R5-06 1 167097768 167097768 G A DUSP27 Missense_Mutation p.D1134N 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 16735650 16735650 C T SPATA21 Silent p.E212E 0.30 TCGA-FW-A3R5-06 1 16736518 16736518 C T SPATA21 Silent p.E55E 0.29 TCGA-FW-A3R5-06 1 167407814 167407814 C T CD247 Missense_Mutation p.G98E 0.37 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 167487803 167487803 C T CD247 5'Flank 0.43 TCGA-FW-A3R5-06 1 16757789 16757789 C T SPATA21 Intron 0.30 TCGA-FW-A3R5-06 1 167659303 167659303 G A RCSD1 Silent p.A72A 0.26 TCGA-FW-A3R5-06 1 167659342 167659342 G A RCSD1 Silent p.L85L 0.21 TCGA-FW-A3R5-06 1 167666526 167666526 G A RCSD1 Missense_Mutation p.G222E 0.34 tolerated(0.33) benign(0.035) TCGA-FW-A3R5-06 1 167666689 167666689 G A RCSD1 Silent p.P276P 0.28 TCGA-FW-A3R5-06 1 167778851 167778851 G A ADCY10 3'Flank 0.26 TCGA-FW-A3R5-06 1 167798579 167798579 G A ADCY10 Missense_Mutation p.H1226Y 0.22 tolerated(0.53) benign(0.005) TCGA-FW-A3R5-06 1 167802338 167802338 G A ADCY10 Silent p.L1160L 0.29 TCGA-FW-A3R5-06 1 167814888 167814888 G A ADCY10 Missense_Mutation p.P974S 0.33 tolerated(0.23) possibly_damaging(0.463) TCGA-FW-A3R5-06 1 167814979 167814979 C T ADCY10 Silent p.K943K 0.07 TCGA-FW-A3R5-06 1 167815251 167815251 G A ADCY10 Silent p.S896S 0.10 TCGA-FW-A3R5-06 1 167823624 167823624 C T ADCY10 Missense_Mutation p.E759K 0.23 deleterious(0) possibly_damaging(0.792) TCGA-FW-A3R5-06 1 167863177 167863177 G A ADCY10 Missense_Mutation p.L248F 0.24 tolerated(0.19) benign(0.009) TCGA-FW-A3R5-06 1 167865839 167865839 G T ADCY10 Missense_Mutation p.H245N 0.30 tolerated(0.4) benign(0.002) TCGA-FW-A3R5-06 1 168014196 168014196 C T DCAF6 Silent p.D663D 0.23 TCGA-FW-A3R5-06 1 168066361 168066361 G A GPR161 Missense_Mutation p.P182S 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 168073894 168073894 G A GPR161 Silent p.F85F 0.36 TCGA-FW-A3R5-06 1 168153170 168153170 C T TIPRL Silent p.L45L 0.28 TCGA-FW-A3R5-06 1 168266990 168266990 C T TBX19 Missense_Mutation p.P211L 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 168278043 168278043 C T TBX19 Missense_Mutation p.S327F 0.23 tolerated(0.06) benign(0.384) TCGA-FW-A3R5-06 1 168511246 168511246 G A XCL2 Missense_Mutation p.S54F 0.34 tolerated(0.14) benign(0.063) TCGA-FW-A3R5-06 1 168550481 168550481 C T XCL1 3'UTR 0.10 TCGA-FW-A3R5-06 1 1686834 1686834 G A NADK Nonsense_Mutation p.Q368* 0.07 TCGA-FW-A3R5-06 1 168698157 168698157 C T DPT Missense_Mutation p.E86K 0.35 tolerated(0.09) benign(0.186) TCGA-FW-A3R5-06 1 16894480 16894480 C T NBPF1 Missense_Mutation p.G887D 0.06 tolerated(0.32) benign(0.399) TCGA-FW-A3R5-06 1 16902777 16902777 G A NBPF1 Nonsense_Mutation p.Q702* 0.04 TCGA-FW-A3R5-06 1 16907974 16907974 A T NBPF1 Missense_Mutation p.D440E 0.03 tolerated(0.12) probably_damaging(0.995) TCGA-FW-A3R5-06 1 169388126 169388126 G A CCDC181 Intron 0.23 TCGA-FW-A3R5-06 1 169390881 169390881 G A CCDC181 Missense_Mutation p.S263F 0.12 tolerated(0.1) benign(0.298) TCGA-FW-A3R5-06 1 169394081 169394081 C T CCDC181 Missense_Mutation p.E29K 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 169394126 169394126 C T CCDC181 Missense_Mutation p.E14K 0.28 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 1 169446940 169446940 G A SLC19A2 Missense_Mutation p.P87L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 169484792 169484792 C T F5 Missense_Mutation p.G2140S 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 169509663 169509663 C T F5 Silent p.R1555R 0.38 TCGA-FW-A3R5-06 1 169511109 169511109 G A F5 Silent p.S1073S 0.23 TCGA-FW-A3R5-06 1 169511128 169511128 G A F5 Missense_Mutation p.S1067L 0.17 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-FW-A3R5-06 1 169511239 169511239 C T F5 Missense_Mutation p.R1030Q 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 169512260 169512260 C T F5 Missense_Mutation p.E690K 0.20 deleterious(0.03) possibly_damaging(0.574) TCGA-FW-A3R5-06 1 169519217 169519217 C T F5 Missense_Mutation p.G478E 0.21 deleterious(0.02) possibly_damaging(0.639) TCGA-FW-A3R5-06 1 169525903 169525903 G A F5 Silent p.L311L 0.09 TCGA-FW-A3R5-06 1 169529932 169529932 G A F5 Missense_Mutation p.T149I 0.21 tolerated(0.05) possibly_damaging(0.833) TCGA-FW-A3R5-06 1 169562877 169562877 G A SELP Silent p.L791L 0.11 TCGA-FW-A3R5-06 1 169572341 169572341 C T SELP Missense_Mutation p.G543E 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 169586315 169586315 C T SELP Silent p.K144K 0.24 TCGA-FW-A3R5-06 1 169677869 169677869 C T SELL Missense_Mutation p.R67K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 169696610 169696610 C T SELE Missense_Mutation p.E509K 0.24 tolerated(0.45) benign(0.098) TCGA-FW-A3R5-06 1 169696913 169696913 C T SELE Missense_Mutation p.G479R 0.22 deleterious(0.02) possibly_damaging(0.798) TCGA-FW-A3R5-06 1 169696962 169696962 C T SELE Silent p.E462E 0.22 TCGA-FW-A3R5-06 1 169697034 169697034 C T SELE Silent p.K438K 0.23 TCGA-FW-A3R5-06 1 169697037 169697037 C T SELE Silent p.P437P 0.23 TCGA-FW-A3R5-06 1 169698359 169698359 C T SELE Missense_Mutation p.G353E 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 169698458 169698458 G A SELE Missense_Mutation p.S320F 0.24 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 1 169701980 169701980 G A SELE Missense_Mutation p.S66L 0.23 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 1 169930250 169930250 G A KIFAP3 Nonsense_Mutation p.R704* 0.35 TCGA-FW-A3R5-06 1 170008397 170008397 G A KIFAP3 Missense_Mutation p.P118S 0.35 tolerated(0.82) possibly_damaging(0.529) TCGA-FW-A3R5-06 1 17029467 17029467 C T ESPNP Intron 0.16 TCGA-FW-A3R5-06 1 17046493 17046493 G A ESPNP RNA 0.07 TCGA-FW-A3R5-06 1 170688895 170688895 G A PRRX1 Silent p.K90K 0.17 TCGA-FW-A3R5-06 1 170688909 170688909 G A PRRX1 Missense_Mutation p.R95Q 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 1 170705332 170705332 A T PRRX1 3'UTR 0.33 TCGA-FW-A3R5-06 1 17084760 17084760 G A MST1L RNA 0.17 TCGA-FW-A3R5-06 1 17084762 17084762 G A MST1L RNA 0.17 TCGA-FW-A3R5-06 1 170940958 170940958 C T MROH9 Missense_Mutation p.P184S 0.26 tolerated(0.62) benign(0.02) TCGA-FW-A3R5-06 1 170952658 170952658 G A MROH9 Missense_Mutation p.E238K 0.15 tolerated(1) benign(0) TCGA-FW-A3R5-06 1 170964567 170964567 C T MROH9 Missense_Mutation p.S411F 0.27 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 1 170964646 170964646 G A MROH9 Silent p.L437L 0.29 TCGA-FW-A3R5-06 1 170965663 170965663 C T MROH9 Silent p.A451A 0.25 TCGA-FW-A3R5-06 1 170967615 170967615 C T MROH9 Intron 0.39 TCGA-FW-A3R5-06 1 171080016 171080016 C T FMO3 Silent p.L235L 0.30 TCGA-FW-A3R5-06 1 171083178 171083178 G A FMO3 Missense_Mutation p.E287K 0.29 deleterious(0.02) benign(0.101) TCGA-FW-A3R5-06 1 171086461 171086461 C T FMO3 Missense_Mutation p.S493L 0.36 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 1 171154906 171154906 G A FMO2 Silent p.L18L 0.26 TCGA-FW-A3R5-06 1 171168627 171168627 G A FMO2 Silent p.Q209Q 0.14 TCGA-FW-A3R5-06 1 171173052 171173052 G A FMO2 Missense_Mutation p.E226K 0.23 deleterious(0.04) benign(0.024) TCGA-FW-A3R5-06 1 171173122 171173122 G A FMO2 Missense_Mutation p.R249Q 0.27 tolerated(0.29) benign(0.085) TCGA-FW-A3R5-06 1 171174688 171174688 C T FMO2 Silent p.L366L 0.25 TCGA-FW-A3R5-06 1 171178038 171178038 C T FMO2 Silent p.F454F 0.33 TCGA-FW-A3R5-06 1 171178214 171178214 C T FMO2 3'UTR 0.37 TCGA-FW-A3R5-06 1 171227237 171227237 G A FMO1 Missense_Mutation p.R4Q 0.27 deleterious(0.02) benign(0.319) TCGA-FW-A3R5-06 1 171247961 171247961 G A FMO1 Missense_Mutation p.G193E 0.16 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 171251235 171251235 A C FMO1 Missense_Mutation p.T316P 0.13 deleterious(0) benign(0.01) TCGA-FW-A3R5-06 1 171254565 171254565 G A FMO1 Missense_Mutation p.R494Q 0.56 deleterious(0.04) benign(0.43) TCGA-FW-A3R5-06 1 171310668 171310668 G A FMO4 Missense_Mutation p.R456K 0.13 tolerated(0.99) benign(0.129) TCGA-FW-A3R5-06 1 171482205 171482205 C T PRRC2C Missense_Mutation p.L60F 0.18 unknown(0) TCGA-FW-A3R5-06 1 171486848 171486848 C T PRRC2C Silent p.I213I 0.29 TCGA-FW-A3R5-06 1 171494075 171494075 C T PRRC2C Missense_Mutation p.P389S 0.18 unknown(0) TCGA-FW-A3R5-06 1 171535411 171535411 A G PRRC2C Missense_Mutation p.T2051A 0.23 possibly_damaging(0.499) TCGA-FW-A3R5-06 1 171546720 171546720 C T PRRC2C Missense_Mutation p.S2366F 0.24 probably_damaging(0.985) TCGA-FW-A3R5-06 1 171605290 171605290 G A MYOC Silent p.F430F 0.26 TCGA-FW-A3R5-06 1 171605341 171605341 G A MYOC Silent p.L413L 0.31 TCGA-FW-A3R5-06 1 171605745 171605745 G A MYOC Missense_Mutation p.P279S 0.41 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 172001634 172001634 C T DNM3 Missense_Mutation p.R228C 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 172007471 172007471 C T DNM3 Missense_Mutation p.H288Y 0.22 deleterious(0) possibly_damaging(0.596) TCGA-FW-A3R5-06 1 172062837 172062837 G A DNM3 Intron 0.20 TCGA-FW-A3R5-06 1 172113772 172113772 C T DNM3 Intron 0.11 TCGA-FW-A3R5-06 1 172425563 172425563 G A C1orf105 Silent p.R69R 0.26 TCGA-FW-A3R5-06 1 172544728 172544728 C T SUCO Missense_Mutation p.P410S 0.09 deleterious(0.04) possibly_damaging(0.863) TCGA-FW-A3R5-06 1 172628244 172628244 G A FASLG 5'UTR 0.27 TCGA-FW-A3R5-06 1 172628472 172628472 G A FASLG Missense_Mutation p.R44K 0.34 tolerated(0.45) probably_damaging(0.994) TCGA-FW-A3R5-06 1 172634851 172634851 C T FASLG Missense_Mutation p.L181F 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 17280797 17280797 C T CROCC Missense_Mutation p.S1089F 0.27 probably_damaging(0.964) TCGA-FW-A3R5-06 1 173010692 173010692 G A TNFSF18 Silent p.L139L 0.21 TCGA-FW-A3R5-06 1 173013100 173013100 C T TNFSF18 Missense_Mutation p.E78K 0.32 tolerated(0.24) benign(0.001) TCGA-FW-A3R5-06 1 173176258 173176258 C T TNFSF4 Missense_Mutation p.E20K 0.24 tolerated(1) benign(0.028) TCGA-FW-A3R5-06 1 173176385 173176385 C T TNFSF4 5'UTR 0.28 TCGA-FW-A3R5-06 1 17318747 17318747 G A ATP13A2 Missense_Mutation p.P666S 0.40 tolerated(0.16) benign(0.057) TCGA-FW-A3R5-06 1 17318748 17318748 G A ATP13A2 Silent p.N665N 0.40 TCGA-FW-A3R5-06 1 173503725 173503725 C T SLC9C2 Missense_Mutation p.M624I 0.09 tolerated(0.46) benign(0.007) TCGA-FW-A3R5-06 1 173517593 173517593 C T SLC9C2 Missense_Mutation p.E466K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 1 173542416 173542416 G A SLC9C2 Silent p.F317F 0.34 TCGA-FW-A3R5-06 1 173552675 173552675 C T SLC9C2 Missense_Mutation p.G204S 0.25 tolerated(0.92) benign(0.008) TCGA-FW-A3R5-06 1 173552676 173552676 C T SLC9C2 Silent p.R203R 0.27 TCGA-FW-A3R5-06 1 173556803 173556803 C T SLC9C2 Splice_Site p.X175_splice 0.28 TCGA-FW-A3R5-06 1 173556856 173556856 G A SLC9C2 Silent p.I157I 0.19 TCGA-FW-A3R5-06 1 173569281 173569281 C T SLC9C2 Missense_Mutation p.G68E 0.11 tolerated(0.35) possibly_damaging(0.836) TCGA-FW-A3R5-06 1 173596232 173596232 C T ANKRD45 Missense_Mutation p.G188E 0.21 tolerated(0.11) benign(0.214) TCGA-FW-A3R5-06 1 173628328 173628328 C T ANKRD45 Missense_Mutation p.G77E 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 173628377 173628377 G A ANKRD45 Missense_Mutation p.P61S 0.32 tolerated(0.05) possibly_damaging(0.511) TCGA-FW-A3R5-06 1 173628411 173628411 C T ANKRD45 Silent p.E49E 0.35 TCGA-FW-A3R5-06 1 173628477 173628477 G A ANKRD45 Silent p.A27A 0.26 TCGA-FW-A3R5-06 1 173628478 173628478 G A ANKRD45 Missense_Mutation p.A27V 0.26 tolerated(0.22) unknown(0) TCGA-FW-A3R5-06 1 173873191 173873191 C T SERPINC1 Missense_Mutation p.G411S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 173883916 173883916 C T SERPINC1 Silent p.K61K 0.29 TCGA-FW-A3R5-06 1 173915704 173915704 G A RC3H1 Silent p.P957P 0.16 TCGA-FW-A3R5-06 1 173934254 173934254 G A RC3H1 Missense_Mutation p.R447C 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 17405782 17405782 G A PADI2 Silent p.I429I 0.21 TCGA-FW-A3R5-06 1 17422449 17422449 C T PADI2 Silent p.V122V 0.31 TCGA-FW-A3R5-06 1 174417609 174417609 C T GPR52 Silent p.I120I 0.30 TCGA-FW-A3R5-06 1 175046525 175046525 C T TNN 5'UTR 0.21 TCGA-FW-A3R5-06 1 175046766 175046766 C T TNN Missense_Mutation p.S71L 0.26 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 1 175046902 175046902 G A TNN Silent p.E116E 0.24 TCGA-FW-A3R5-06 1 175048543 175048543 G A TNN Missense_Mutation p.E162K 0.65 deleterious(0.02) benign(0.009) TCGA-FW-A3R5-06 1 175048558 175048558 G A TNN Missense_Mutation p.E167K 0.31 tolerated(0.06) benign(0.012) TCGA-FW-A3R5-06 1 175048623 175048623 C T TNN Silent p.C188C 0.38 TCGA-FW-A3R5-06 1 175049404 175049404 C T TNN Missense_Mutation p.P297L 0.10 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 1 175063158 175063158 C T TNN Nonsense_Mutation p.R453* 0.22 TCGA-FW-A3R5-06 1 175063304 175063304 G A TNN Silent p.L501L 0.33 TCGA-FW-A3R5-06 1 175063316 175063316 G A TNN Silent p.E505E 0.25 TCGA-FW-A3R5-06 1 175087870 175087870 G A TNN Missense_Mutation p.G854S 0.23 deleterious(0.01) probably_damaging(0.911) TCGA-FW-A3R5-06 1 175097744 175097744 C T TNN Silent p.F1064F 0.26 TCGA-FW-A3R5-06 1 175105061 175105061 G A TNN Missense_Mutation p.M1137I 0.30 deleterious(0.03) benign(0.077) TCGA-FW-A3R5-06 1 175299218 175299218 C T TNR Missense_Mutation p.G1262D 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 175304863 175304863 C T TNR Silent p.E1205E 0.08 TCGA-FW-A3R5-06 1 175306769 175306769 C T TNR Missense_Mutation p.M1143I 0.33 tolerated(0.06) benign(0.008) TCGA-FW-A3R5-06 1 17531718 17531718 C T PADI1 Silent p.A2A 0.33 TCGA-FW-A3R5-06 1 175334294 175334294 C T TNR Silent p.E813E 0.35 TCGA-FW-A3R5-06 1 175334383 175334383 G A TNR Missense_Mutation p.H784Y 0.30 deleterious(0.04) possibly_damaging(0.729) TCGA-FW-A3R5-06 1 175355212 175355212 C T TNR Missense_Mutation p.R578Q 0.29 deleterious(0.01) possibly_damaging(0.84) TCGA-FW-A3R5-06 1 175360448 175360448 G A TNR Missense_Mutation p.P495S 0.34 tolerated(0.13) probably_damaging(0.964) TCGA-FW-A3R5-06 1 175365684 175365684 G A TNR Silent p.A412A 0.25 TCGA-FW-A3R5-06 1 175372323 175372323 C T TNR Missense_Mutation p.G310E 0.20 deleterious(0) possibly_damaging(0.819) TCGA-FW-A3R5-06 1 17550869 17550869 C T PADI1 Silent p.S118S 0.32 TCGA-FW-A3R5-06 1 17559460 17559460 C T PADI1 Silent p.F436F 0.45 TCGA-FW-A3R5-06 1 17588655 17588655 G A PADI3 Missense_Mutation p.E101K 0.37 tolerated(0.51) benign(0.008) TCGA-FW-A3R5-06 1 17592160 17592160 C T PADI3 Missense_Mutation p.S118F 0.31 deleterious(0.01) possibly_damaging(0.832) TCGA-FW-A3R5-06 1 17596843 17596843 C T PADI3 Silent p.F256F 0.31 TCGA-FW-A3R5-06 1 17599924 17599924 C T PADI3 Silent p.F379F 0.37 TCGA-FW-A3R5-06 1 17603053 17603053 C T PADI3 Silent p.F449F 0.20 TCGA-FW-A3R5-06 1 176525760 176525760 G A PAPPA2 Missense_Mutation p.G101E 0.31 tolerated_low_confidence(0.32) benign(0.006) TCGA-FW-A3R5-06 1 176526272 176526272 C T PAPPA2 Silent p.L272L 0.24 TCGA-FW-A3R5-06 1 176526305 176526305 C T PAPPA2 Missense_Mutation p.P283S 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 176563712 176563712 G A PAPPA2 Silent p.G324G 0.14 TCGA-FW-A3R5-06 1 176563735 176563735 G A PAPPA2 Missense_Mutation p.G332E 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-FW-A3R5-06 1 176563857 176563857 G A PAPPA2 Missense_Mutation p.G373R 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 176563900 176563900 G A PAPPA2 Missense_Mutation p.S387N 0.28 tolerated(0.39) benign(0.026) TCGA-FW-A3R5-06 1 176564036 176564036 C T PAPPA2 Silent p.A432A 0.24 TCGA-FW-A3R5-06 1 176564037 176564037 C T PAPPA2 Silent p.L433L 0.24 TCGA-FW-A3R5-06 1 176564328 176564328 G A PAPPA2 Missense_Mutation p.V530M 0.13 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 1 176564418 176564418 C T PAPPA2 Missense_Mutation p.R560C 0.17 tolerated(0.06) possibly_damaging(0.855) TCGA-FW-A3R5-06 1 17657536 17657536 C T PADI4 Silent p.G55G 0.36 TCGA-FW-A3R5-06 1 17657537 17657537 C T PADI4 Missense_Mutation p.P56S 0.36 tolerated(0.41) benign(0.04) TCGA-FW-A3R5-06 1 176659540 176659540 C T PAPPA2 Missense_Mutation p.P802L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 176668411 176668411 C T PAPPA2 Silent p.F974F 0.30 TCGA-FW-A3R5-06 1 176668568 176668568 G A PAPPA2 Missense_Mutation p.E1027K 0.38 tolerated(0.07) possibly_damaging(0.905) TCGA-FW-A3R5-06 1 176671814 176671814 C T PAPPA2 Missense_Mutation p.S1103L 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 176675568 176675568 G A PAPPA2 Missense_Mutation p.E1147K 0.26 tolerated(0.92) benign(0.004) TCGA-FW-A3R5-06 1 176680968 176680968 C T PAPPA2 Intron 0.34 TCGA-FW-A3R5-06 1 17668547 17668547 C T PADI4 Silent p.L254L 0.28 TCGA-FW-A3R5-06 1 17668875 17668875 C T PADI4 Missense_Mutation p.P305S 0.08 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 1 17668880 17668880 G A PADI4 Silent p.Q306Q 0.22 TCGA-FW-A3R5-06 1 176708836 176708836 G A PAPPA2 Silent p.E1291E 0.36 TCGA-FW-A3R5-06 1 176708876 176708876 C T PAPPA2 Missense_Mutation p.R1305C 0.30 deleterious(0.01) benign(0.163) TCGA-FW-A3R5-06 1 176738894 176738894 C T PAPPA2 Missense_Mutation p.S1492F 0.34 deleterious(0) possibly_damaging(0.766) TCGA-FW-A3R5-06 1 176740250 176740250 C T PAPPA2 Missense_Mutation p.T1550I 0.31 deleterious(0) possibly_damaging(0.782) TCGA-FW-A3R5-06 1 176760486 176760486 C T PAPPA2 Missense_Mutation p.P1630S 0.21 tolerated(0.3) benign(0.081) TCGA-FW-A3R5-06 1 176762693 176762693 C T PAPPA2 Intron 0.22 TCGA-FW-A3R5-06 1 176762775 176762775 G A PAPPA2 Silent p.L1700L 0.25 TCGA-FW-A3R5-06 1 176762788 176762788 G A PAPPA2 Missense_Mutation p.E1705K 0.22 tolerated(0.59) benign(0.014) TCGA-FW-A3R5-06 1 176809404 176809404 G A PAPPA2 Silent p.K1766K 0.22 TCGA-FW-A3R5-06 1 17682618 17682618 G A PADI4 Missense_Mutation p.R484K 0.20 tolerated(0.79) benign(0.005) TCGA-FW-A3R5-06 1 176833426 176833426 C T ASTN1 Silent p.E1293E 0.31 TCGA-FW-A3R5-06 1 176853515 176853515 C T ASTN1 Silent p.E1062E 0.28 TCGA-FW-A3R5-06 1 17690098 17690098 G A PADI4 Missense_Mutation p.E614K 0.31 tolerated(0.06) benign(0.2) TCGA-FW-A3R5-06 1 176905489 176905489 C T ASTN1 Missense_Mutation p.E799K 0.41 deleterious(0) possibly_damaging(0.495) TCGA-FW-A3R5-06 1 176915071 176915071 C T ASTN1 Missense_Mutation p.G747E 0.31 tolerated(0.23) benign(0.191) TCGA-FW-A3R5-06 1 176915162 176915162 C T ASTN1 Missense_Mutation p.E717K 0.26 deleterious(0.01) benign(0.079) TCGA-FW-A3R5-06 1 176934326 176934326 C T ASTN1 Missense_Mutation p.G524E 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 1 176992706 176992706 C T ASTN1 Silent p.G424G 0.16 TCGA-FW-A3R5-06 1 176998797 176998797 G A ASTN1 Missense_Mutation p.P365S 0.17 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-FW-A3R5-06 1 177198937 177198937 C T BRINP2 Intron 0.36 TCGA-FW-A3R5-06 1 17721594 17721594 G A PADI6 RNA 0.26 TCGA-FW-A3R5-06 1 177225145 177225145 G A BRINP2 Silent p.R120R 0.24 TCGA-FW-A3R5-06 1 177226448 177226448 C T BRINP2 Silent p.A199A 0.25 TCGA-FW-A3R5-06 1 177247706 177247706 C T BRINP2 Silent p.F340F 0.12 TCGA-FW-A3R5-06 1 177247750 177247750 C T BRINP2 Missense_Mutation p.S355F 0.23 tolerated(0.07) benign(0.034) TCGA-FW-A3R5-06 1 177247899 177247899 C T BRINP2 Missense_Mutation p.R405C 0.25 deleterious(0.01) possibly_damaging(0.549) TCGA-FW-A3R5-06 1 177249597 177249597 G A BRINP2 Missense_Mutation p.E429K 0.29 deleterious(0.01) possibly_damaging(0.664) TCGA-FW-A3R5-06 1 177249620 177249620 C T BRINP2 Silent p.F436F 0.26 TCGA-FW-A3R5-06 1 177249815 177249815 C T BRINP2 Silent p.N501N 0.17 TCGA-FW-A3R5-06 1 177250629 177250629 C T BRINP2 Missense_Mutation p.P773S 0.22 tolerated(0.86) benign(0.002) TCGA-FW-A3R5-06 1 17739641 17739641 G A RCC2 Missense_Mutation p.S414F 0.25 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 1 178423749 178423749 C T RASAL2 Missense_Mutation p.S726F 0.19 deleterious(0) probably_damaging(0.929) TCGA-FW-A3R5-06 1 178442297 178442297 C T RASAL2 Missense_Mutation p.R1256C 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 1 178482276 178482276 C T TEX35 5'UTR 0.25 TCGA-FW-A3R5-06 1 178802677 178802677 C T RALGPS2 Missense_Mutation p.P200L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 178846735 178846735 G A RALGPS2 Missense_Mutation p.R237Q 0.22 deleterious(0.03) benign(0.075) TCGA-FW-A3R5-06 1 178854323 178854323 G A RALGPS2 Silent p.R339R 0.14 TCGA-FW-A3R5-06 1 179076997 179076997 G A ABL2 Silent p.A1135A 0.39 TCGA-FW-A3R5-06 1 179414114 179414114 G A AXDND1 Missense_Mutation p.E525K 0.24 deleterious(0.01) benign(0.021) TCGA-FW-A3R5-06 1 179437688 179437688 G A AXDND1 Missense_Mutation p.E637K 0.29 tolerated(0.55) benign(0.176) TCGA-FW-A3R5-06 1 179437854 179437854 C T AXDND1 Intron 0.31 TCGA-FW-A3R5-06 1 179503926 179503926 C T AXDND1 Missense_Mutation p.H954Y 0.25 deleterious(0.02) benign(0.009) TCGA-FW-A3R5-06 1 179504001 179504001 G A AXDND1 Missense_Mutation p.E979K 0.10 tolerated(0.32) unknown(0) TCGA-FW-A3R5-06 1 179520386 179520386 C T NPHS2 Silent p.Q358Q 0.26 TCGA-FW-A3R5-06 1 179533882 179533882 G A NPHS2 Silent p.L107L 0.29 TCGA-FW-A3R5-06 1 17953868 17953868 C T ARHGEF10L Missense_Mutation p.S485L 0.22 deleterious(0) possibly_damaging(0.897) TCGA-FW-A3R5-06 1 179544834 179544834 C T NPHS2 Missense_Mutation p.E56K 0.47 tolerated(0.11) benign(0.08) TCGA-FW-A3R5-06 1 179561820 179561820 G A TDRD5 Missense_Mutation p.D24N 0.09 tolerated(0.22) benign(0.343) TCGA-FW-A3R5-06 1 179561838 179561838 G A TDRD5 Missense_Mutation p.E30K 0.24 deleterious(0.01) benign(0.015) TCGA-FW-A3R5-06 1 179562606 179562606 G A TDRD5 Missense_Mutation p.E82K 0.19 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 1 179587780 179587780 G A TDRD5 Missense_Mutation p.G293E 0.28 deleterious(0.03) probably_damaging(0.911) TCGA-FW-A3R5-06 1 179603649 179603649 C T TDRD5 Missense_Mutation p.S395L 0.28 tolerated(0.22) benign(0.044) TCGA-FW-A3R5-06 1 179604914 179604914 C T TDRD5 Missense_Mutation p.S471F 0.24 tolerated(0.12) benign(0.015) TCGA-FW-A3R5-06 1 179604982 179604982 G A TDRD5 Missense_Mutation p.D494N 0.33 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 1 179609144 179609144 G A TDRD5 Missense_Mutation p.G564E 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 179620142 179620142 C T TDRD5 Silent p.F647F 0.28 TCGA-FW-A3R5-06 1 179621192 179621192 C T TDRD5 Missense_Mutation p.P674S 0.08 deleterious(0) possibly_damaging(0.891) TCGA-FW-A3R5-06 1 179782989 179782989 C T FAM163A Missense_Mutation p.P57S 0.26 tolerated(0.64) benign(0.006) TCGA-FW-A3R5-06 1 180064816 180064816 G A CEP350 Silent p.K2890K 0.28 TCGA-FW-A3R5-06 1 18014197 18014197 C T ARHGEF10L Silent p.L1047L 0.18 TCGA-FW-A3R5-06 1 180166062 180166062 C A QSOX1 Missense_Mutation p.L712I 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 180166241 180166241 C T QSOX1 3'UTR 0.38 TCGA-FW-A3R5-06 1 180240826 180240826 G A LHX4 Intron 0.23 TCGA-FW-A3R5-06 1 180885620 180885620 G A KIAA1614 Silent p.G127G 0.07 TCGA-FW-A3R5-06 1 180945579 180945579 G A STX6 3'UTR 0.23 TCGA-FW-A3R5-06 1 181021631 181021631 C T MR1 Missense_Mutation p.L289F 0.30 tolerated(0.09) probably_damaging(0.943) TCGA-FW-A3R5-06 1 181480566 181480566 G A CACNA1E Silent p.V144V 0.30 TCGA-FW-A3R5-06 1 18149669 18149669 G A ACTL8 Missense_Mutation p.D56N 0.34 tolerated(0.19) benign(0.023) TCGA-FW-A3R5-06 1 18152433 18152433 G A ACTL8 Missense_Mutation p.E174K 0.14 tolerated(0.05) benign(0.193) TCGA-FW-A3R5-06 1 18152586 18152586 C T ACTL8 Missense_Mutation p.R225C 0.17 tolerated(0.13) benign(0.006) TCGA-FW-A3R5-06 1 18152803 18152803 C T ACTL8 Missense_Mutation p.A297V 0.24 tolerated(0.28) benign(0.022) TCGA-FW-A3R5-06 1 18152804 18152804 C T ACTL8 Silent p.A297A 0.24 TCGA-FW-A3R5-06 1 181546989 181546989 C T CACNA1E Silent p.L200L 0.40 TCGA-FW-A3R5-06 1 181549743 181549743 G A CACNA1E Missense_Mutation p.G261E 0.26 tolerated(1) benign(0.024) TCGA-FW-A3R5-06 1 181620505 181620505 G A CACNA1E Nonsense_Mutation p.W328* 0.26 TCGA-FW-A3R5-06 1 181680128 181680128 G A CACNA1E Missense_Mutation p.R365K 0.23 deleterious(0.01) benign(0.067) TCGA-FW-A3R5-06 1 181689353 181689353 C T CACNA1E Missense_Mutation p.S588F 0.32 deleterious(0) possibly_damaging(0.788) TCGA-FW-A3R5-06 1 181689418 181689418 C T CACNA1E Missense_Mutation p.L610F 0.29 deleterious(0) possibly_damaging(0.849) TCGA-FW-A3R5-06 1 181689429 181689429 C T CACNA1E Silent p.F613F 0.30 TCGA-FW-A3R5-06 1 181701992 181701992 C T CACNA1E Missense_Mutation p.R924C 0.22 deleterious(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 1 181702044 181702044 C T CACNA1E Missense_Mutation p.S941F 0.27 deleterious(0.03) possibly_damaging(0.485) TCGA-FW-A3R5-06 1 181702138 181702138 G A CACNA1E Silent p.T972T 0.23 TCGA-FW-A3R5-06 1 181702859 181702859 C T CACNA1E Missense_Mutation p.P1079S 0.20 tolerated(0.07) possibly_damaging(0.641) TCGA-FW-A3R5-06 1 181705452 181705452 G A CACNA1E Missense_Mutation p.A1102T 0.38 tolerated(0.49) benign(0.01) TCGA-FW-A3R5-06 1 181708304 181708304 C T CACNA1E Silent p.L1212L 0.26 TCGA-FW-A3R5-06 1 181721295 181721295 G A CACNA1E Missense_Mutation p.D1250N 0.24 deleterious(0.05) probably_damaging(0.959) TCGA-FW-A3R5-06 1 181726163 181726163 C T CACNA1E Silent p.F1410F 0.32 TCGA-FW-A3R5-06 1 181732562 181732562 C T CACNA1E Silent p.F1570F 0.08 TCGA-FW-A3R5-06 1 181732596 181732596 C T CACNA1E Missense_Mutation p.R1582C 0.38 deleterious(0) possibly_damaging(0.898) TCGA-FW-A3R5-06 1 181740436 181740436 G A CACNA1E Missense_Mutation p.G1630E 0.56 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 1 181745299 181745299 C T CACNA1E Silent p.S1734S 0.30 TCGA-FW-A3R5-06 1 181752865 181752865 C T CACNA1E Silent p.F1805F 0.23 TCGA-FW-A3R5-06 1 181764142 181764142 C T CACNA1E Missense_Mutation p.S2057F 0.20 deleterious(0.01) possibly_damaging(0.828) TCGA-FW-A3R5-06 1 181764162 181764162 C T CACNA1E Missense_Mutation p.R2064C 0.26 tolerated(0.14) probably_damaging(0.919) TCGA-FW-A3R5-06 1 182026425 182026425 C T ZNF648 Missense_Mutation p.E241K 0.35 tolerated(0.27) benign(0.038) TCGA-FW-A3R5-06 1 182026719 182026719 C T ZNF648 Missense_Mutation p.D143N 0.29 tolerated(0.27) benign(0.002) TCGA-FW-A3R5-06 1 182026917 182026917 C T ZNF648 Missense_Mutation p.E77K 0.25 tolerated(0.46) benign(0.002) TCGA-FW-A3R5-06 1 182368876 182368876 G A TEDDM1 Missense_Mutation p.L249F 0.35 tolerated(0.32) benign(0.007) TCGA-FW-A3R5-06 1 182555890 182555890 C T RNASEL Missense_Mutation p.G18S 0.10 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 182615833 182615833 G A RGS8 3'UTR 0.20 TCGA-FW-A3R5-06 1 182822450 182822450 C T DHX9 Missense_Mutation p.S125F 0.27 tolerated(0.08) benign(0.147) TCGA-FW-A3R5-06 1 182852338 182852338 C T DHX9 Silent p.S993S 0.24 TCGA-FW-A3R5-06 1 182869233 182869233 C T SHCBP1L Missense_Mutation p.G616E 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 183096487 183096487 C T LAMC1 Missense_Mutation p.S1024F 0.29 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 1 183191281 183191281 C T LAMC2 Missense_Mutation p.S233L 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 1 183196718 183196718 G A LAMC2 Missense_Mutation p.D452N 0.29 deleterious(0.03) probably_damaging(0.98) TCGA-FW-A3R5-06 1 183197559 183197559 G A LAMC2 Missense_Mutation p.E507K 0.31 tolerated(0.29) possibly_damaging(0.792) TCGA-FW-A3R5-06 1 183209424 183209424 C T LAMC2 Intron 0.21 TCGA-FW-A3R5-06 1 183221688 183221688 G A NMNAT2 3'UTR 0.24 TCGA-FW-A3R5-06 1 183230174 183230174 T C NMNAT2 Missense_Mutation p.N262D 0.31 tolerated(0.18) benign(0) TCGA-FW-A3R5-06 1 183253058 183253058 C T NMNAT2 Intron 0.17 TCGA-FW-A3R5-06 1 183498122 183498122 C T SMG7 Missense_Mutation p.P218S 0.27 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 1 183711395 183711395 C T RGL1 Nonsense_Mutation p.R35* 0.20 TCGA-FW-A3R5-06 1 183895291 183895291 G A RGL1 Silent p.V759V 0.26 TCGA-FW-A3R5-06 1 183913377 183913377 C T COLGALT2 Missense_Mutation p.M450I 0.23 tolerated(0.24) benign(0.005) TCGA-FW-A3R5-06 1 183944265 183944265 C T COLGALT2 Missense_Mutation p.R153Q 0.25 tolerated(0.34) benign(0.041) TCGA-FW-A3R5-06 1 184765166 184765166 C T FAM129A Missense_Mutation p.E578K 0.21 deleterious(0.02) probably_damaging(0.969) TCGA-FW-A3R5-06 1 184792440 184792440 C T FAM129A Silent p.L282L 0.26 TCGA-FW-A3R5-06 1 1848629 1848629 G A CALML6 Silent p.Q181Q 0.27 TCGA-FW-A3R5-06 1 18554486 18554486 G A IGSF21 Silent p.R55R 0.33 TCGA-FW-A3R5-06 1 185902943 185902943 C T HMCN1 Silent p.F605F 0.20 TCGA-FW-A3R5-06 1 186008003 186008003 C T HMCN1 Missense_Mutation p.T1965I 0.28 benign(0.211) TCGA-FW-A3R5-06 1 186022189 186022189 T A HMCN1 Missense_Mutation p.L2228H 0.37 probably_damaging(0.999) TCGA-FW-A3R5-06 1 186026368 186026368 C T HMCN1 Missense_Mutation p.P2383S 0.27 possibly_damaging(0.512) TCGA-FW-A3R5-06 1 186045650 186045650 C T HMCN1 Missense_Mutation p.P2794L 0.32 probably_damaging(0.999) TCGA-FW-A3R5-06 1 186059893 186059893 C T HMCN1 Missense_Mutation p.P3244L 0.24 probably_damaging(0.996) TCGA-FW-A3R5-06 1 186115002 186115002 C T HMCN1 Missense_Mutation p.P4852L 0.19 possibly_damaging(0.464) TCGA-FW-A3R5-06 1 186266028 186266028 C T PRG4 Silent p.P7P 0.30 TCGA-FW-A3R5-06 1 186292914 186292914 G A TPR Silent p.A2067A 0.31 TCGA-FW-A3R5-06 1 186646786 186646786 G A PTGS2 Missense_Mutation p.H212Y 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 1 186862233 186862233 C T PLA2G4A Missense_Mutation p.P69L 0.24 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 1 18691869 18691869 C T IGSF21 Silent p.L231L 0.26 TCGA-FW-A3R5-06 1 18702854 18702854 G A IGSF21 Missense_Mutation p.G356R 0.24 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 1 18807896 18807896 C T KLHDC7A Missense_Mutation p.P141S 0.29 tolerated(0.9) benign(0) TCGA-FW-A3R5-06 1 18808058 18808058 G A KLHDC7A Missense_Mutation p.E195K 0.26 tolerated(0.38) benign(0.01) TCGA-FW-A3R5-06 1 18808449 18808449 C T KLHDC7A Missense_Mutation p.S325F 0.21 deleterious(0.03) benign(0.332) TCGA-FW-A3R5-06 1 18809042 18809042 C T KLHDC7A Missense_Mutation p.R523C 0.26 tolerated(0.18) benign(0.003) TCGA-FW-A3R5-06 1 190067218 190067218 G A BRINP3 Missense_Mutation p.S744F 0.30 deleterious(0.02) benign(0.172) TCGA-FW-A3R5-06 1 190067485 190067485 G A BRINP3 Missense_Mutation p.S655F 0.24 deleterious(0) benign(0.241) TCGA-FW-A3R5-06 1 190068213 190068213 C T BRINP3 Silent p.E412E 0.31 TCGA-FW-A3R5-06 1 190129977 190129977 G A BRINP3 Silent p.F335F 0.29 TCGA-FW-A3R5-06 1 19018322 19018322 C T PAX7 Missense_Mutation p.R221W 0.28 deleterious(0.01) benign(0.036) TCGA-FW-A3R5-06 1 19018374 19018374 G A PAX7 Missense_Mutation p.R238K 0.24 tolerated(0.08) benign(0.03) TCGA-FW-A3R5-06 1 190195323 190195323 G A BRINP3 Missense_Mutation p.P284S 0.24 tolerated(0.38) benign(0.007) TCGA-FW-A3R5-06 1 190234049 190234049 C T BRINP3 Silent p.R188R 0.30 TCGA-FW-A3R5-06 1 190234050 190234050 C T BRINP3 Missense_Mutation p.R188K 0.31 tolerated(0.13) benign(0.187) TCGA-FW-A3R5-06 1 190250839 190250839 C T BRINP3 Missense_Mutation p.R93K 0.17 tolerated(0.25) benign(0.012) TCGA-FW-A3R5-06 1 190423945 190423945 G A BRINP3 Missense_Mutation p.H26Y 0.25 tolerated_low_confidence(1) benign(0.097) TCGA-FW-A3R5-06 1 19062482 19062482 C T PAX7 Silent p.S504S 0.43 TCGA-FW-A3R5-06 1 19166658 19166658 G A TAS1R2 Missense_Mutation p.S652F 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 19176015 19176015 G A TAS1R2 Silent p.F429F 0.15 TCGA-FW-A3R5-06 1 19183983 19183983 G A TAS1R2 Nonsense_Mutation p.Q109* 0.26 TCGA-FW-A3R5-06 1 19199334 19199334 G T ALDH4A1 3'UTR 0.17 TCGA-FW-A3R5-06 1 19199335 19199335 G A ALDH4A1 3'UTR 0.17 TCGA-FW-A3R5-06 1 1920052 1920052 C T C1orf222 Silent p.K56K 0.29 TCGA-FW-A3R5-06 1 1920391 1920391 G A C1orf222 Missense_Mutation p.P21L 0.26 tolerated(0.12) unknown(0) TCGA-FW-A3R5-06 1 19209673 19209673 G A ALDH4A1 Missense_Mutation p.S208L 0.35 deleterious(0) possibly_damaging(0.858) TCGA-FW-A3R5-06 1 192321319 192321319 C T RGS21 Silent p.F77F 0.31 TCGA-FW-A3R5-06 1 192335256 192335256 G A RGS21 3'UTR 0.22 TCGA-FW-A3R5-06 1 192544995 192544995 G A RGS1 Missense_Mutation p.E25K 0.30 tolerated(0.26) benign(0.069) TCGA-FW-A3R5-06 1 192545472 192545472 G A RGS1 Missense_Mutation p.M65I 0.32 tolerated(0.29) benign(0.001) TCGA-FW-A3R5-06 1 192545481 192545481 C T RGS1 Silent p.S68S 0.25 TCGA-FW-A3R5-06 1 193046046 193046046 C T TROVE2 Missense_Mutation p.R318C 0.10 deleterious(0.03) benign(0.093) TCGA-FW-A3R5-06 1 19404514 19404515 - GAAAGAACGGTAAGCGGAATAGATC UBR4 Frame_Shift_Ins p.L5094Dfs*23 0.10 TCGA-FW-A3R5-06 1 19428056 19428056 G A UBR4 Silent p.T4327T 0.17 TCGA-FW-A3R5-06 1 19480431 19480431 G A UBR4 Missense_Mutation p.S2154F 0.30 possibly_damaging(0.825) TCGA-FW-A3R5-06 1 1956458 1956458 C T GABRD Missense_Mutation p.A49V 0.24 tolerated(0.1) benign(0.006) TCGA-FW-A3R5-06 1 19593689 19593689 T C AKR7L 3'UTR 0.36 TCGA-FW-A3R5-06 1 19595801 19595801 G A AKR7L Intron 0.24 TCGA-FW-A3R5-06 1 1961051 1961051 G A GABRD Silent p.R303R 0.19 TCGA-FW-A3R5-06 1 196295998 196295998 C T KCNT2 Missense_Mutation p.E709K 0.28 tolerated(0.3) probably_damaging(0.991) TCGA-FW-A3R5-06 1 196309524 196309524 G A KCNT2 Missense_Mutation p.S577L 0.22 tolerated(0.1) benign(0.002) TCGA-FW-A3R5-06 1 19632552 19632552 G A AKR7A2 Missense_Mutation p.S293L 0.22 deleterious(0) possibly_damaging(0.492) TCGA-FW-A3R5-06 1 19634676 19634676 G A AKR7A2 Silent p.G189G 0.27 TCGA-FW-A3R5-06 1 19635037 19635037 G A AKR7A2 Missense_Mutation p.P133L 0.14 deleterious(0.04) benign(0.385) TCGA-FW-A3R5-06 1 196398761 196398761 G A KCNT2 Silent p.S255S 0.27 TCGA-FW-A3R5-06 1 196577452 196577452 A C KCNT2 5'UTR 0.28 TCGA-FW-A3R5-06 1 196646781 196646781 G A CFH Silent p.E201E 0.16 TCGA-FW-A3R5-06 1 196648906 196648906 C T CFH Missense_Mutation p.P258L 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-FW-A3R5-06 1 196659300 196659300 C T CFH Missense_Mutation p.P423S 0.38 tolerated(0.14) benign(0.036) TCGA-FW-A3R5-06 1 196709907 196709907 C T CFH Missense_Mutation p.P981S 0.20 tolerated(0.09) benign(0.442) TCGA-FW-A3R5-06 1 196716443 196716443 G A CFH Silent p.%3D 0.26 TCGA-FW-A3R5-06 1 196871677 196871677 C T CFHR4 Missense_Mutation p.P62L 0.26 deleterious(0.01) probably_damaging(0.929) TCGA-FW-A3R5-06 1 196883708 196883708 G A CFHR4 Missense_Mutation p.E421K 0.16 tolerated(0.13) benign(0.305) TCGA-FW-A3R5-06 1 196887632 196887632 C T CFHR4 3'UTR 0.36 TCGA-FW-A3R5-06 1 196887667 196887667 C T CFHR4 3'UTR 0.30 TCGA-FW-A3R5-06 1 196918671 196918671 G A CFHR2 Missense_Mutation p.E49K 0.31 tolerated(1) benign(0.121) TCGA-FW-A3R5-06 1 196928210 196928210 G A CFHR2 Silent p.%3D 0.19 TCGA-FW-A3R5-06 1 196952140 196952140 C T CFHR5 Missense_Mutation p.P62S 0.27 tolerated(0.08) probably_damaging(0.96) TCGA-FW-A3R5-06 1 196964899 196964899 G A CFHR5 Silent p.K220K 0.27 TCGA-FW-A3R5-06 1 196965187 196965187 G A CFHR5 Missense_Mutation p.E276K 0.23 tolerated(0.17) benign(0.004) TCGA-FW-A3R5-06 1 197008366 197008366 G A F13B 3'UTR 0.35 TCGA-FW-A3R5-06 1 197008410 197008410 G A F13B 3'UTR 0.25 TCGA-FW-A3R5-06 1 197019875 197019875 C T F13B Missense_Mutation p.E564K 0.22 tolerated(0.42) benign(0.013) TCGA-FW-A3R5-06 1 197024862 197024862 G A F13B Missense_Mutation p.S446F 0.36 tolerated(0.07) possibly_damaging(0.866) TCGA-FW-A3R5-06 1 197032181 197032181 G A F13B Missense_Mutation p.P24L 0.28 tolerated(0.27) benign(0.005) TCGA-FW-A3R5-06 1 197036305 197036305 C T F13B Missense_Mutation p.E17K 0.26 tolerated(0.81) benign(0.004) TCGA-FW-A3R5-06 1 197036339 197036339 G A F13B Silent p.N5N 0.28 TCGA-FW-A3R5-06 1 197073649 197073649 G A ASPM Nonsense_Mutation p.R1578* 0.20 TCGA-FW-A3R5-06 1 197102708 197102708 G A ASPM Missense_Mutation p.L731F 0.19 tolerated(0.08) possibly_damaging(0.873) TCGA-FW-A3R5-06 1 197298091 197298091 G A CRB1 Missense_Mutation p.E204K 0.27 tolerated(0.61) benign(0.199) TCGA-FW-A3R5-06 1 197390319 197390319 G A CRB1 Missense_Mutation p.G454E 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 197390723 197390723 G A CRB1 Missense_Mutation p.E589K 0.23 tolerated(0.16) benign(0.031) TCGA-FW-A3R5-06 1 197390859 197390859 C T CRB1 Missense_Mutation p.P634L 0.26 tolerated(0.65) benign(0.098) TCGA-FW-A3R5-06 1 197390946 197390946 C T CRB1 Missense_Mutation p.S663L 0.09 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 197396914 197396914 C T CRB1 Missense_Mutation p.S820F 0.25 deleterious(0.01) benign(0.332) TCGA-FW-A3R5-06 1 197403884 197403884 G A CRB1 Missense_Mutation p.R964K 0.31 tolerated(0.06) benign(0.01) TCGA-FW-A3R5-06 1 197404228 197404228 G A CRB1 Missense_Mutation p.D1079N 0.15 tolerated(0.14) benign(0.269) TCGA-FW-A3R5-06 1 197404312 197404312 C T CRB1 Missense_Mutation p.L1107F 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 197411416 197411416 G A CRB1 Silent p.E1333E 0.23 TCGA-FW-A3R5-06 1 197411531 197411531 G A CRB1 Intron 0.27 TCGA-FW-A3R5-06 1 197446823 197446823 C T CRB1 Silent p.F1345F 0.11 TCGA-FW-A3R5-06 1 197446859 197446859 G A CRB1 Silent p.L1357L 0.15 TCGA-FW-A3R5-06 1 197522230 197522230 G A DENND1B Nonsense_Mutation p.R388* 0.11 TCGA-FW-A3R5-06 1 197704860 197704860 T C DENND1B Intron 0.28 TCGA-FW-A3R5-06 1 197889254 197889254 C T LHX9 Silent p.L109L 0.06 TCGA-FW-A3R5-06 1 197890485 197890485 G A LHX9 Silent p.S143S 0.27 TCGA-FW-A3R5-06 1 197890486 197890486 G A LHX9 Missense_Mutation p.E144K 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-FW-A3R5-06 1 198492560 198492560 C T ATP6V1G3 Missense_Mutation p.M106I 0.21 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 198665886 198665886 C T PTPRC Missense_Mutation p.P49L 0.13 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 1 198687314 198687314 C T PTPRC Silent p.P514P 0.22 TCGA-FW-A3R5-06 1 198713186 198713186 C T PTPRC Nonsense_Mutation p.Q901* 0.18 TCGA-FW-A3R5-06 1 198721736 198721736 G A PTPRC Missense_Mutation p.R1115Q 0.18 tolerated(0.42) possibly_damaging(0.73) TCGA-FW-A3R5-06 1 198725306 198725306 C T PTPRC Missense_Mutation p.S1306L 0.30 deleterious_low_confidence(0) benign(0.231) TCGA-FW-A3R5-06 1 19981573 19981573 C T MINOS1-NBL1 Missense_Mutation p.A17V 0.24 tolerated(0.06) probably_damaging(0.971) TCGA-FW-A3R5-06 1 200008813 200008813 C T NR5A2 Missense_Mutation p.S31F 0.20 tolerated_low_confidence(0.13) benign(0.004) TCGA-FW-A3R5-06 1 200014584 200014584 G A NR5A2 Missense_Mutation p.R112Q 0.15 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 1 200143213 200143213 C T NR5A2 Missense_Mutation p.L501F 0.36 tolerated(0.08) benign(0.218) TCGA-FW-A3R5-06 1 200534713 200534713 G A KIF14 Missense_Mutation p.S1249L 0.34 deleterious(0.03) possibly_damaging(0.505) TCGA-FW-A3R5-06 1 200635747 200635747 G A DDX59 Missense_Mutation p.P41L 0.25 tolerated_low_confidence(0.32) benign(0.001) TCGA-FW-A3R5-06 1 200813990 200813990 C T CAMSAP2 Missense_Mutation p.P368S 0.13 tolerated(0.18) benign(0.001) TCGA-FW-A3R5-06 1 200819244 200819244 C T CAMSAP2 Missense_Mutation p.S1116F 0.35 deleterious(0) probably_damaging(0.926) TCGA-FW-A3R5-06 1 200842325 200842325 C T GPR25 Silent p.L54L 0.15 TCGA-FW-A3R5-06 1 200877935 200877935 G A C1orf106 Missense_Mutation p.G218S 0.32 tolerated(0.17) possibly_damaging(0.8) TCGA-FW-A3R5-06 1 200880878 200880878 C T C1orf106 Silent p.V419V 0.49 TCGA-FW-A3R5-06 1 200943915 200943915 C T KIF21B Missense_Mutation p.G1581S 0.34 deleterious(0.02) benign(0.199) TCGA-FW-A3R5-06 1 200957929 200957929 G A KIF21B Missense_Mutation p.P1088L 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 1 200957930 200957930 G A KIF21B Missense_Mutation p.P1088S 0.30 deleterious(0.05) probably_damaging(0.997) TCGA-FW-A3R5-06 1 200965372 200965372 C T KIF21B Silent p.R743R 0.27 TCGA-FW-A3R5-06 1 200967555 200967555 G A KIF21B Silent p.I678I 0.23 TCGA-FW-A3R5-06 1 200967678 200967678 G A KIF21B Silent p.A637A 0.31 TCGA-FW-A3R5-06 1 200967679 200967679 G A KIF21B Missense_Mutation p.A637V 0.31 deleterious(0.03) probably_damaging(0.989) TCGA-FW-A3R5-06 1 200971323 200971323 C T KIF21B Missense_Mutation p.M456I 0.31 deleterious(0.01) possibly_damaging(0.577) TCGA-FW-A3R5-06 1 201012658 201012658 C T CACNA1S Missense_Mutation p.R1600K 0.16 deleterious(0.03) possibly_damaging(0.643) TCGA-FW-A3R5-06 1 201016711 201016711 C T CACNA1S Silent p.K1495K 0.23 TCGA-FW-A3R5-06 1 201023684 201023684 G A CACNA1S Silent p.F1205F 0.18 TCGA-FW-A3R5-06 1 201029892 201029892 G A CACNA1S Missense_Mutation p.P1103L 0.06 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 1 201035010 201035010 G A CACNA1S Missense_Mutation p.L937F 0.27 deleterious(0.01) benign(0.309) TCGA-FW-A3R5-06 1 201046127 201046127 C T CACNA1S Missense_Mutation p.G583E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 201063042 201063042 C T CACNA1S Nonsense_Mutation p.W122* 0.27 TCGA-FW-A3R5-06 1 20107104 20107104 G A TMCO4 Silent p.L50L 0.23 TCGA-FW-A3R5-06 1 20107106 20107106 G A TMCO4 Missense_Mutation p.S49F 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-FW-A3R5-06 1 201079390 201079390 C T CACNA1S Missense_Mutation p.E54K 0.29 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 1 201115880 201115880 G A TMEM9 Silent p.T85T 0.15 TCGA-FW-A3R5-06 1 201115881 201115881 G A TMEM9 Missense_Mutation p.T85I 0.15 tolerated(0.05) probably_damaging(0.968) TCGA-FW-A3R5-06 1 201182696 201182696 G A IGFN1 Missense_Mutation p.S2892N 0.24 probably_damaging(0.949) TCGA-FW-A3R5-06 1 201185871 201185871 G A IGFN1 Silent p.V3195V 0.27 TCGA-FW-A3R5-06 1 201190778 201190778 G A IGFN1 Missense_Mutation p.G3369R 0.30 benign(0.018) TCGA-FW-A3R5-06 1 201196111 201196111 G A IGFN1 Missense_Mutation p.E3630K 0.36 probably_damaging(0.946) TCGA-FW-A3R5-06 1 201286864 201286864 C T PKP1 Silent p.L337L 0.25 TCGA-FW-A3R5-06 1 201287786 201287786 G A PKP1 Silent p.E365E 0.19 TCGA-FW-A3R5-06 1 201330225 201330225 C T TNNT2 Intron 0.29 TCGA-FW-A3R5-06 1 201332429 201332429 G A TNNT2 Nonsense_Mutation p.Q189* 0.12 TCGA-FW-A3R5-06 1 201351789 201351789 C T LAD1 Missense_Mutation p.D489N 0.38 tolerated(0.22) benign(0.117) TCGA-FW-A3R5-06 1 201355491 201355491 G A LAD1 Missense_Mutation p.A333V 0.29 tolerated(0.08) benign(0.076) TCGA-FW-A3R5-06 1 201355640 201355640 C T LAD1 Silent p.R283R 0.21 TCGA-FW-A3R5-06 1 201356012 201356012 C T LAD1 Silent p.E159E 0.15 TCGA-FW-A3R5-06 1 201358367 201358367 G A LAD1 Missense_Mutation p.R35C 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 1 201379421 201379421 G A TNNI1 Intron 0.38 TCGA-FW-A3R5-06 1 20140998 20140998 G A RNF186 Silent p.L199L 0.19 TCGA-FW-A3R5-06 1 20141139 20141139 G A RNF186 Silent p.A152A 0.16 TCGA-FW-A3R5-06 1 20141286 20141286 C T RNF186 Silent p.E103E 0.17 TCGA-FW-A3R5-06 1 20141519 20141519 G A RNF186 Missense_Mutation p.P26S 0.35 tolerated(0.09) benign(0.011) TCGA-FW-A3R5-06 1 201687649 201687649 C T NAV1 Missense_Mutation p.P331L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 201752810 201752810 C T NAV1 Silent p.L878L 0.33 TCGA-FW-A3R5-06 1 201778347 201778347 C T NAV1 Silent p.L1421L 0.24 TCGA-FW-A3R5-06 1 201840306 201840306 C T IPO9 Silent p.F809F 0.29 TCGA-FW-A3R5-06 1 201868737 201868737 G A LMOD1 Silent p.S468S 0.27 TCGA-FW-A3R5-06 1 201869723 201869723 C T LMOD1 Missense_Mutation p.E140K 0.24 benign(0.146) TCGA-FW-A3R5-06 1 201983066 201983066 C T ELF3 Silent p.F305F 0.15 TCGA-FW-A3R5-06 1 201984554 201984554 C T ELF3 3'UTR 0.40 TCGA-FW-A3R5-06 1 202103498 202103498 G T ARL8A 3'UTR 0.32 TCGA-FW-A3R5-06 1 202128409 202128409 C T PTPN7 Missense_Mutation p.R146K 0.12 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 1 202128723 202128723 G A PTPN7 Intron 0.30 TCGA-FW-A3R5-06 1 202266700 202266700 G A LGR6 Missense_Mutation p.E261K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 202272434 202272434 G A LGR6 Silent p.Q319Q 0.08 TCGA-FW-A3R5-06 1 202287109 202287109 G A LGR6 Missense_Mutation p.E560K 0.29 deleterious(0.02) benign(0.184) TCGA-FW-A3R5-06 1 202287192 202287192 C T LGR6 Silent p.F587F 0.08 TCGA-FW-A3R5-06 1 202287288 202287288 C T LGR6 Silent p.A619A 0.33 TCGA-FW-A3R5-06 1 202457675 202457675 C T PPP1R12B Missense_Mutation p.P622L 0.15 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 20249114 20249114 C T PLA2G2E Missense_Mutation p.D59N 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 202702705 202702705 G A KDM5B Missense_Mutation p.R1245C 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 202704705 202704705 G A KDM5B Missense_Mutation p.P1092L 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 202710505 202710505 G T KDM5B Missense_Mutation p.L979I 0.26 tolerated(0.12) benign(0.155) TCGA-FW-A3R5-06 1 202710650 202710650 G A KDM5B Silent p.P930P 0.35 TCGA-FW-A3R5-06 1 202777349 202777349 G A KDM5B Missense_Mutation p.P29S 0.34 deleterious(0) unknown(0) TCGA-FW-A3R5-06 1 202861744 202861744 G A KLHL12 Missense_Mutation p.P542S 0.16 tolerated(0.07) possibly_damaging(0.682) TCGA-FW-A3R5-06 1 202861773 202861773 G A KLHL12 Missense_Mutation p.S532F 0.19 tolerated(0.06) possibly_damaging(0.647) TCGA-FW-A3R5-06 1 202914163 202914163 G A ADIPOR1 Missense_Mutation p.L189F 0.08 deleterious(0.01) benign(0.183) TCGA-FW-A3R5-06 1 202936392 202936392 G A CYB5R1 5'UTR 0.12 TCGA-FW-A3R5-06 1 202991991 202991991 C T TMEM183A Silent p.I318I 0.27 TCGA-FW-A3R5-06 1 203017798 203017798 C T PPFIA4 5'Flank 0.15 TCGA-FW-A3R5-06 1 203025996 203025996 C T PPFIA4 Silent p.I269I 0.24 TCGA-FW-A3R5-06 1 203029380 203029380 C T PPFIA4 Silent p.A367A 0.25 TCGA-FW-A3R5-06 1 203045556 203045556 C T PPFIA4 3'UTR 0.28 TCGA-FW-A3R5-06 1 203054976 203054976 C T MYOG Silent p.T38T 0.30 TCGA-FW-A3R5-06 1 203134377 203134377 C T ADORA1 Intron 0.45 TCGA-FW-A3R5-06 1 203134472 203134472 C T ADORA1 Missense_Mutation p.P142L 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 203144855 203144855 G A MYBPH Missense_Mutation p.P10L 0.31 tolerated_low_confidence(0.1) benign(0.004) TCGA-FW-A3R5-06 1 203155836 203155836 C T CHI3L1 5'UTR 0.27 TCGA-FW-A3R5-06 1 203188883 203188883 G A CHIT1 Missense_Mutation p.S275F 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 203197680 203197680 G A CHIT1 Silent p.V12V 0.25 TCGA-FW-A3R5-06 1 203452401 203452401 C T PRELP Missense_Mutation p.T30I 0.22 tolerated_low_confidence(0.21) benign(0) TCGA-FW-A3R5-06 1 203667416 203667416 C T ATP2B4 Silent p.L109L 0.23 TCGA-FW-A3R5-06 1 203676168 203676168 C T ATP2B4 Silent p.I377I 0.23 TCGA-FW-A3R5-06 1 203680140 203680140 C T ATP2B4 Silent p.F645F 0.27 TCGA-FW-A3R5-06 1 203681213 203681213 C T ATP2B4 Silent p.F719F 0.23 TCGA-FW-A3R5-06 1 203691724 203691724 C G ATP2B4 Missense_Mutation p.N977K 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 1 203696724 203696724 C T ATP2B4 Intron 0.24 TCGA-FW-A3R5-06 1 203708726 203708726 C T ATP2B4 Missense_Mutation p.P1121L 0.27 deleterious(0.01) benign(0.018) TCGA-FW-A3R5-06 1 203743176 203743176 G A LAX1 Silent p.E188E 0.33 TCGA-FW-A3R5-06 1 203798606 203798606 C T ZC3H11A Missense_Mutation p.P109L 0.28 deleterious(0.04) benign(0.018) TCGA-FW-A3R5-06 1 203819693 203819693 C T ZC3H11A Missense_Mutation p.P664S 0.22 tolerated(0.32) benign(0.042) TCGA-FW-A3R5-06 1 204006215 204006215 G A LINC00303 Intron 0.29 TCGA-FW-A3R5-06 1 204006418 204006418 G A LINC00303 RNA 0.27 TCGA-FW-A3R5-06 1 204086786 204086786 C T SOX13 Silent p.T242T 0.31 TCGA-FW-A3R5-06 1 204124159 204124159 G A REN Silent p.F402F 0.26 TCGA-FW-A3R5-06 1 204124271 204124271 G A REN Missense_Mutation p.A365V 0.34 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 1 204129793 204129793 G A REN Silent p.L129L 0.23 TCGA-FW-A3R5-06 1 204159666 204159666 G A KISS1 Silent p.F121F 0.45 TCGA-FW-A3R5-06 1 204172074 204172074 G A GOLT1A Missense_Mutation p.L23F 0.27 tolerated(0.77) benign(0.024) TCGA-FW-A3R5-06 1 20440676 20440676 C T PLA2G2D Silent p.L123L 0.23 TCGA-FW-A3R5-06 1 204587068 204587068 G T LRRN2 Missense_Mutation p.P685T 0.24 tolerated_low_confidence(0.16) benign(0.052) TCGA-FW-A3R5-06 1 204587210 204587210 G A LRRN2 Silent p.L637L 0.33 TCGA-FW-A3R5-06 1 204588011 204588011 G A LRRN2 Silent p.P370P 0.26 TCGA-FW-A3R5-06 1 204588113 204588113 C T LRRN2 Silent p.Q336Q 0.16 TCGA-FW-A3R5-06 1 204588393 204588393 G A LRRN2 Missense_Mutation p.S243F 0.19 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 1 204589039 204589039 G A LRRN2 Missense_Mutation p.P28S 0.18 tolerated(0.66) unknown(0) TCGA-FW-A3R5-06 1 20470032 20470032 G A PLA2G2F Missense_Mutation p.G88D 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 20474748 20474748 C T PLA2G2F Missense_Mutation p.L164F 0.10 tolerated(0.47) benign(0.125) TCGA-FW-A3R5-06 1 20474889 20474889 C T PLA2G2F Missense_Mutation p.P211S 0.14 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-FW-A3R5-06 1 204913519 204913519 G A NFASC Missense_Mutation p.E26K 0.25 deleterious(0.02) benign(0.23) TCGA-FW-A3R5-06 1 204923364 204923364 C T NFASC Silent p.P88P 0.09 TCGA-FW-A3R5-06 1 204923365 204923365 C A NFASC Silent p.R89R 0.08 TCGA-FW-A3R5-06 1 204923962 204923962 C T NFASC Missense_Mutation p.P140S 0.25 deleterious(0.03) probably_damaging(0.938) TCGA-FW-A3R5-06 1 204924014 204924014 C T NFASC Missense_Mutation p.P157L 0.27 tolerated(0.24) possibly_damaging(0.836) TCGA-FW-A3R5-06 1 204926948 204926948 C T NFASC Missense_Mutation p.L234F 0.31 tolerated(0.13) possibly_damaging(0.766) TCGA-FW-A3R5-06 1 204937378 204937378 C T NFASC Silent p.T236T 0.11 TCGA-FW-A3R5-06 1 204937936 204937936 G A NFASC Missense_Mutation p.D277N 0.25 tolerated(0.15) benign(0.165) TCGA-FW-A3R5-06 1 204939816 204939816 G A NFASC Missense_Mutation p.R359Q 0.23 deleterious(0.04) benign(0.183) TCGA-FW-A3R5-06 1 204939824 204939824 G A NFASC Missense_Mutation p.G362R 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 204943415 204943415 G A NFASC Missense_Mutation p.R463Q 0.29 tolerated(0.07) probably_damaging(0.988) TCGA-FW-A3R5-06 1 204944445 204944445 G A NFASC Silent p.R535R 0.29 TCGA-FW-A3R5-06 1 204944446 204944446 G A NFASC Missense_Mutation p.G536S 0.30 tolerated(0.09) possibly_damaging(0.908) TCGA-FW-A3R5-06 1 204946817 204946817 G A NFASC Missense_Mutation p.A614T 0.22 tolerated(0.23) benign(0.034) TCGA-FW-A3R5-06 1 204948579 204948579 C T NFASC Missense_Mutation p.L690F 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 204950989 204950989 G A NFASC Missense_Mutation p.E771K 0.27 tolerated(0.06) possibly_damaging(0.561) TCGA-FW-A3R5-06 1 204951123 204951123 C T NFASC Silent p.S815S 0.33 TCGA-FW-A3R5-06 1 204953175 204953175 G A NFASC Intron 0.13 TCGA-FW-A3R5-06 1 204953222 204953222 G A NFASC Intron 0.14 TCGA-FW-A3R5-06 1 204955233 204955233 C T NFASC Intron 0.21 TCGA-FW-A3R5-06 1 204981969 204981969 G A NFASC Missense_Mutation p.E1156K 0.27 tolerated(0.07) unknown(0) TCGA-FW-A3R5-06 1 205033876 205033876 G A CNTN2 Missense_Mutation p.R506Q 0.31 tolerated(0.34) probably_damaging(0.917) TCGA-FW-A3R5-06 1 205038639 205038639 G A CNTN2 Missense_Mutation p.G716R 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 1 205042351 205042351 C T CNTN2 Silent p.I1000I 0.24 TCGA-FW-A3R5-06 1 205068928 205068928 G A RBBP5 Nonsense_Mutation p.R307* 0.27 TCGA-FW-A3R5-06 1 205069166 205069166 G A RBBP5 Missense_Mutation p.S260F 0.26 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 205132913 205132913 G A DSTYK Silent p.L499L 0.19 TCGA-FW-A3R5-06 1 205133001 205133001 G A DSTYK Silent p.I469I 0.11 TCGA-FW-A3R5-06 1 20517739 20517739 G A UBXN10 Missense_Mutation p.E229K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 205197795 205197795 C T TMCC2 Missense_Mutation p.P35S 0.37 deleterious_low_confidence(0.03) benign(0) TCGA-FW-A3R5-06 1 205197796 205197796 C T TMCC2 Missense_Mutation p.P35L 0.38 deleterious_low_confidence(0.01) benign(0.003) TCGA-FW-A3R5-06 1 205272864 205272864 G A NUAK2 Missense_Mutation p.A534V 0.35 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 1 205273193 205273193 C T NUAK2 Silent p.E424E 0.41 TCGA-FW-A3R5-06 1 205273195 205273195 C T NUAK2 Missense_Mutation p.E424K 0.24 tolerated(0.4) benign(0.002) TCGA-FW-A3R5-06 1 205273430 205273430 C T NUAK2 Silent p.E345E 0.40 TCGA-FW-A3R5-06 1 205306568 205306568 G A KLHDC8A Silent p.L338L 0.23 TCGA-FW-A3R5-06 1 205308499 205308499 C T KLHDC8A Missense_Mutation p.V194I 0.14 deleterious(0.02) possibly_damaging(0.579) TCGA-FW-A3R5-06 1 205350680 205350680 C T LEMD1 3'UTR 0.47 TCGA-FW-A3R5-06 1 205350681 205350681 C T LEMD1 3'UTR 0.14 TCGA-FW-A3R5-06 1 205350899 205350899 C T LEMD1 Missense_Mutation p.E145K 0.30 tolerated(0.43) benign(0.305) TCGA-FW-A3R5-06 1 205388426 205388426 G A LEMD1 Missense_Mutation p.P46L 0.31 deleterious(0.04) possibly_damaging(0.713) TCGA-FW-A3R5-06 1 205498689 205498689 C T CDK18 Silent p.L437L 0.21 TCGA-FW-A3R5-06 1 205500627 205500627 G A CDK18 3'UTR 0.64 TCGA-FW-A3R5-06 1 205549071 205549071 C T MFSD4 Silent p.F141F 0.24 TCGA-FW-A3R5-06 1 205549800 205549800 C T MFSD4 Silent p.F147F 0.08 TCGA-FW-A3R5-06 1 205554035 205554035 G A MFSD4 Silent p.R297R 0.27 TCGA-FW-A3R5-06 1 205589256 205589256 G A ELK4 Silent p.V306V 0.27 TCGA-FW-A3R5-06 1 205592886 205592886 G A ELK4 Missense_Mutation p.A42V 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 205632186 205632186 G A SLC45A3 Missense_Mutation p.R245W 0.30 deleterious(0.02) possibly_damaging(0.67) TCGA-FW-A3R5-06 1 205632659 205632659 G A SLC45A3 Missense_Mutation p.P87L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 205760641 205760641 G A SLC41A1 3'UTR 0.33 TCGA-FW-A3R5-06 1 205890756 205890756 G A SLC26A9 Missense_Mutation p.L665F 0.21 deleterious(0.01) possibly_damaging(0.784) TCGA-FW-A3R5-06 1 205896725 205896725 G A SLC26A9 Silent p.I370I 0.24 TCGA-FW-A3R5-06 1 205899140 205899140 G A SLC26A9 Silent p.L199L 0.24 TCGA-FW-A3R5-06 1 206224524 206224524 C T AVPR1B Silent p.G28G 0.26 TCGA-FW-A3R5-06 1 206224750 206224750 G A AVPR1B Missense_Mutation p.D104N 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 206225182 206225182 G A AVPR1B Missense_Mutation p.D248N 0.30 tolerated(0.52) benign(0.006) TCGA-FW-A3R5-06 1 206225329 206225329 T A AVPR1B Missense_Mutation p.F297I 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 206320265 206320265 C T CTSE Silent p.S136S 0.27 TCGA-FW-A3R5-06 1 206331107 206331107 G A CTSE Silent p.G371G 0.29 TCGA-FW-A3R5-06 1 206331108 206331108 G A CTSE Missense_Mutation p.D372N 0.30 deleterious(0.02) possibly_damaging(0.744) TCGA-FW-A3R5-06 1 206634943 206634943 C T SRGAP2 3'UTR 0.40 TCGA-FW-A3R5-06 1 206653844 206653844 C T IKBKE Silent p.L465L 0.27 TCGA-FW-A3R5-06 1 206666435 206666435 C T IKBKE Nonsense_Mutation p.Q639* 0.23 TCGA-FW-A3R5-06 1 206669483 206669483 C T IKBKE 3'UTR 0.34 TCGA-FW-A3R5-06 1 206760379 206760379 G A RASSF5 3'UTR 0.47 TCGA-FW-A3R5-06 1 206769163 206769163 G A EIF2D Silent p.A471A 0.20 TCGA-FW-A3R5-06 1 206778857 206778857 G A EIF2D Silent p.A142A 0.26 TCGA-FW-A3R5-06 1 206821945 206821945 C T DYRK3 Missense_Mutation p.R468C 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 207041867 207041867 G A IL20 Silent p.G163G 0.23 TCGA-FW-A3R5-06 1 207085271 207085271 C T FAIM3 Missense_Mutation p.V172I 0.28 deleterious(0.05) benign(0.008) TCGA-FW-A3R5-06 1 207095173 207095173 G A FAIM3 Silent p.Y9Y 0.33 TCGA-FW-A3R5-06 1 207103574 207103574 G A PIGR 3'UTR 0.40 TCGA-FW-A3R5-06 1 207103749 207103749 C T PIGR Missense_Mutation p.E737K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 207107939 207107939 C T PIGR Missense_Mutation p.E511K 0.34 tolerated(0.08) benign(0.005) TCGA-FW-A3R5-06 1 207108834 207108834 C T PIGR Missense_Mutation p.E459K 0.35 deleterious(0.04) possibly_damaging(0.665) TCGA-FW-A3R5-06 1 207110583 207110583 G A PIGR Missense_Mutation p.P301L 0.35 tolerated(0.5) benign(0.021) TCGA-FW-A3R5-06 1 207135558 207135558 C T FCAMR Missense_Mutation p.G218S 0.24 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 1 207135708 207135708 C T FCAMR Missense_Mutation p.D168N 0.30 deleterious(0.03) benign(0.021) TCGA-FW-A3R5-06 1 207140439 207140439 C T FCAMR Missense_Mutation p.G43R 0.09 tolerated(0.28) benign(0.232) TCGA-FW-A3R5-06 1 207195413 207195413 G A C1orf116 Missense_Mutation p.R566C 0.25 deleterious(0) probably_damaging(0.921) TCGA-FW-A3R5-06 1 207196053 207196053 C T C1orf116 Silent p.E352E 0.12 TCGA-FW-A3R5-06 1 207196183 207196183 C T C1orf116 Missense_Mutation p.S309N 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-FW-A3R5-06 1 207222587 207222587 G A YOD1 Silent p.F275F 0.28 TCGA-FW-A3R5-06 1 207228079 207228079 C T PFKFB2 Missense_Mutation p.S6F 0.39 benign(0.006) TCGA-FW-A3R5-06 1 207245777 207245777 C T PFKFB2 3'UTR 0.38 TCGA-FW-A3R5-06 1 207262917 207262917 G A C4BPB Missense_Mutation p.R14Q 0.27 tolerated(0.07) benign(0.001) TCGA-FW-A3R5-06 1 207297708 207297708 G A C4BPA Missense_Mutation p.E235K 0.22 tolerated(1) benign(0.045) TCGA-FW-A3R5-06 1 207307839 207307839 G A C4BPA Missense_Mutation p.G392E 0.23 tolerated(0.15) possibly_damaging(0.572) TCGA-FW-A3R5-06 1 207639872 207639872 G A CR2 Silent p.G20G 0.25 TCGA-FW-A3R5-06 1 207640026 207640026 G A CR2 Missense_Mutation p.D72N 0.31 tolerated(0.72) benign(0) TCGA-FW-A3R5-06 1 207640098 207640098 G A CR2 Missense_Mutation p.V96I 0.15 tolerated(0.07) benign(0.416) TCGA-FW-A3R5-06 1 207640181 207640181 C T CR2 Silent p.S123S 0.31 TCGA-FW-A3R5-06 1 207642028 207642028 G A CR2 Missense_Mutation p.G201E 0.25 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 207643161 207643161 G A CR2 Silent p.V313V 0.30 TCGA-FW-A3R5-06 1 207644767 207644767 G A CR2 Splice_Site p.X498_splice 0.30 TCGA-FW-A3R5-06 1 207644806 207644806 G A CR2 Missense_Mutation p.G511D 0.27 deleterious(0.03) benign(0.222) TCGA-FW-A3R5-06 1 207651394 207651394 C T CR2 Missense_Mutation p.P1023S 0.14 deleterious(0.01) possibly_damaging(0.814) TCGA-FW-A3R5-06 1 207669671 207669671 C T CR1 Missense_Mutation p.P20L 0.35 tolerated_low_confidence(0.36) benign(0.003) TCGA-FW-A3R5-06 1 207751211 207751211 G A CR1 Silent p.E1533E 0.17 TCGA-FW-A3R5-06 1 207751310 207751310 C T CR1 Silent p.T1566T 0.29 TCGA-FW-A3R5-06 1 207758014 207758014 C T CR1 Missense_Mutation p.P1775S 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 1 207758215 207758215 C T CR1 Missense_Mutation p.R1842C 0.31 deleterious(0.03) probably_damaging(0.935) TCGA-FW-A3R5-06 1 207760774 207760774 G A CR1 Silent p.T1858T 0.31 TCGA-FW-A3R5-06 1 207785317 207785317 C T CR1 Missense_Mutation p.P2169L 0.07 tolerated(0.28) benign(0.038) TCGA-FW-A3R5-06 1 207787802 207787802 C T CR1 Missense_Mutation p.A2210V 0.16 deleterious(0.03) possibly_damaging(0.547) TCGA-FW-A3R5-06 1 207850802 207850802 C T CR1L Missense_Mutation p.P56S 0.25 tolerated(0.11) benign(0.309) TCGA-FW-A3R5-06 1 207870911 207870911 C T CR1L Missense_Mutation p.S309L 0.24 tolerated(0.57) benign(0.094) TCGA-FW-A3R5-06 1 207872548 207872548 G A CR1L Missense_Mutation p.G386D 0.24 deleterious(0) possibly_damaging(0.558) TCGA-FW-A3R5-06 1 208061033 208061033 G A CD34 3'UTR 0.38 TCGA-FW-A3R5-06 1 208200648 208200648 C T PLXNA2 Silent p.R1875R 0.24 TCGA-FW-A3R5-06 1 208218435 208218435 G A PLXNA2 Missense_Mutation p.L1206F 0.28 tolerated(0.06) probably_damaging(0.995) TCGA-FW-A3R5-06 1 208218536 208218536 G A PLXNA2 Missense_Mutation p.P1172L 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 1 208224719 208224719 G A PLXNA2 Missense_Mutation p.L1015F 0.25 tolerated(0.7) possibly_damaging(0.761) TCGA-FW-A3R5-06 1 208390835 208390835 G A PLXNA2 Missense_Mutation p.L145F 0.15 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 20915648 20915648 C T CDA Missense_Mutation p.T9I 0.18 deleterious(0.02) benign(0.035) TCGA-FW-A3R5-06 1 20915649 20915649 C T CDA Silent p.T9T 0.18 TCGA-FW-A3R5-06 1 20915652 20915652 G A CDA Silent p.L10L 0.19 TCGA-FW-A3R5-06 1 20915772 20915772 C T CDA Silent p.F50F 0.24 TCGA-FW-A3R5-06 1 209768306 209768306 C T CAMK1G 5'UTR 0.38 TCGA-FW-A3R5-06 1 209782374 209782374 G A CAMK1G Missense_Mutation p.E229K 0.32 tolerated(0.17) possibly_damaging(0.777) TCGA-FW-A3R5-06 1 209783237 209783237 G A CAMK1G Missense_Mutation p.E264K 0.23 tolerated(1) benign(0.033) TCGA-FW-A3R5-06 1 209784817 209784817 G A CAMK1G Missense_Mutation p.G279R 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 1 209788748 209788748 C T LAMB3 Missense_Mutation p.M1129I 0.16 tolerated(0.6) benign(0.003) TCGA-FW-A3R5-06 1 209790845 209790845 G A LAMB3 Silent p.L1046L 0.23 TCGA-FW-A3R5-06 1 209791391 209791391 C T LAMB3 Missense_Mutation p.S971N 0.08 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 209797190 209797190 G A LAMB3 Missense_Mutation p.P711L 0.33 tolerated(0.7) benign(0.02) TCGA-FW-A3R5-06 1 209799047 209799047 G A LAMB3 Missense_Mutation p.P641L 0.27 deleterious(0.01) benign(0.06) TCGA-FW-A3R5-06 1 209803966 209803966 A T LAMB3 Missense_Mutation p.C313S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 209807842 209807842 G A LAMB3 Missense_Mutation p.R172W 0.27 deleterious(0.02) benign(0.12) TCGA-FW-A3R5-06 1 209807849 209807849 C T LAMB3 Silent p.Q169Q 0.18 TCGA-FW-A3R5-06 1 209807885 209807885 G A LAMB3 Silent p.F157F 0.29 TCGA-FW-A3R5-06 1 209823449 209823449 G A LAMB3 Silent p.L15L 0.35 TCGA-FW-A3R5-06 1 209879200 209879200 G A HSD11B1 Missense_Mutation p.G45R 0.33 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 20990974 20990974 G A KIF17 3'UTR 0.24 TCGA-FW-A3R5-06 1 209950791 209950791 G A TRAF3IP3 Missense_Mutation p.G383E 0.22 tolerated(1) benign(0.011) TCGA-FW-A3R5-06 1 209950792 209950792 G A TRAF3IP3 Silent p.G383G 0.24 TCGA-FW-A3R5-06 1 209961772 209961772 G A IRF6 Missense_Mutation p.P466L 0.28 deleterious_low_confidence(0.05) benign(0.002) TCGA-FW-A3R5-06 1 20998468 20998468 G A KIF17 Silent p.I895I 0.11 TCGA-FW-A3R5-06 1 20998675 20998675 C T KIF17 Silent p.E826E 0.27 TCGA-FW-A3R5-06 1 210001478 210001478 C T DIEXF Missense_Mutation p.L24F 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 21016731 21016731 G A KIF17 Missense_Mutation p.S444L 0.28 tolerated(0.11) benign(0.011) TCGA-FW-A3R5-06 1 210187104 210187104 C T SYT14 Missense_Mutation p.S108L 0.25 tolerated(0.13) benign(0.047) TCGA-FW-A3R5-06 1 21031193 21031193 C T KIF17 Silent p.S290S 0.28 TCGA-FW-A3R5-06 1 21036173 21036173 G A KIF17 Missense_Mutation p.S210L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 210411339 210411339 G A SERTAD4 Missense_Mutation p.E12K 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-FW-A3R5-06 1 210414908 210414908 C T SERTAD4 Silent p.I99I 0.23 TCGA-FW-A3R5-06 1 210414947 210414947 C T SERTAD4 Silent p.S112S 0.16 TCGA-FW-A3R5-06 1 210577852 210577852 C T HHAT Silent p.F172F 0.37 TCGA-FW-A3R5-06 1 210856647 210856647 C T KCNH1 Silent p.E982E 0.06 TCGA-FW-A3R5-06 1 210857019 210857019 C T KCNH1 Silent p.S858S 0.25 TCGA-FW-A3R5-06 1 210857051 210857051 C T KCNH1 Missense_Mutation p.E848K 0.29 tolerated_low_confidence(0.06) benign(0.031) TCGA-FW-A3R5-06 1 210857425 210857425 C T KCNH1 Missense_Mutation p.R723Q 0.22 tolerated(0.21) benign(0.02) TCGA-FW-A3R5-06 1 210948733 210948733 G A KCNH1 Missense_Mutation p.S690F 0.37 deleterious(0) possibly_damaging(0.649) TCGA-FW-A3R5-06 1 210970944 210970944 G A KCNH1 Silent p.L607L 0.37 TCGA-FW-A3R5-06 1 210977336 210977336 G A KCNH1 Silent p.S545S 0.25 TCGA-FW-A3R5-06 1 211093356 211093356 C T KCNH1 Missense_Mutation p.R363Q 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 211192190 211192190 C T KCNH1 Missense_Mutation p.G323S 0.22 deleterious(0.04) benign(0.001) TCGA-FW-A3R5-06 1 211192554 211192554 C T KCNH1 Silent p.E201E 0.34 TCGA-FW-A3R5-06 1 211654713 211654713 C T RD3 Silent p.R15R 0.10 TCGA-FW-A3R5-06 1 211749497 211749497 G A SLC30A1 Missense_Mutation p.L253F 0.23 tolerated(0.32) benign(0.108) TCGA-FW-A3R5-06 1 21188816 21188816 C T EIF4G3 Missense_Mutation p.D956N 0.19 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 1 211923103 211923103 G A LPGAT1 3'UTR 0.31 TCGA-FW-A3R5-06 1 212149950 212149950 G A INTS7 Missense_Mutation p.R528C 0.31 tolerated(0.08) benign(0.22) TCGA-FW-A3R5-06 1 212180634 212180634 G A INTS7 Silent p.F238F 0.34 TCGA-FW-A3R5-06 1 212276201 212276201 C T DTL Silent p.S704S 0.30 TCGA-FW-A3R5-06 1 212619322 212619322 C T NENF Missense_Mutation p.H165Y 0.19 deleterious(0) possibly_damaging(0.727) TCGA-FW-A3R5-06 1 21268095 21268095 G A EIF4G3 Missense_Mutation p.L468F 0.21 deleterious_low_confidence(0.03) benign(0.005) TCGA-FW-A3R5-06 1 212798854 212798854 G A FAM71A Missense_Mutation p.G212E 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 1 212798992 212798992 C T FAM71A Missense_Mutation p.S258F 0.30 deleterious(0.01) possibly_damaging(0.453) TCGA-FW-A3R5-06 1 212799896 212799896 G A FAM71A Silent p.R559R 0.26 TCGA-FW-A3R5-06 1 212860311 212860311 C T BATF3 Missense_Mutation p.S69N 0.33 tolerated(0.35) benign(0.005) TCGA-FW-A3R5-06 1 213046096 213046096 C T FLVCR1 Silent p.S320S 0.20 TCGA-FW-A3R5-06 1 21306909 21306909 G A EIF4G3 Silent p.P88P 0.23 TCGA-FW-A3R5-06 1 21306910 21306910 G A EIF4G3 Missense_Mutation p.P88L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 213147299 213147299 C T VASH2 Silent p.I250I 0.36 TCGA-FW-A3R5-06 1 213147345 213147345 G A VASH2 Missense_Mutation p.G266R 0.16 tolerated(0.1) possibly_damaging(0.632) TCGA-FW-A3R5-06 1 214171118 214171118 G A PROX1 Missense_Mutation p.D414N 0.16 tolerated(0.06) probably_damaging(0.993) TCGA-FW-A3R5-06 1 214178524 214178524 C T PROX1 Missense_Mutation p.S581L 0.27 deleterious(0) possibly_damaging(0.683) TCGA-FW-A3R5-06 1 214504346 214504346 C T SMYD2 Silent p.A290A 0.29 TCGA-FW-A3R5-06 1 214556972 214556972 G A PTPN14 Silent p.A742A 0.30 TCGA-FW-A3R5-06 1 214813331 214813331 C T CENPF Silent p.S550S 0.30 TCGA-FW-A3R5-06 1 214814107 214814107 C T CENPF Missense_Mutation p.S809L 0.28 benign(0.013) TCGA-FW-A3R5-06 1 214815813 214815813 C T CENPF Missense_Mutation p.P1378S 0.08 benign(0.001) TCGA-FW-A3R5-06 1 215259778 215259778 C T KCNK2 Silent p.S38S 0.23 TCGA-FW-A3R5-06 1 21548263 21548263 G A ECE1 Missense_Mutation p.L705F 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 21548335 21548335 C T ECE1 Missense_Mutation p.A681T 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 21564648 21564648 G A ECE1 Silent p.F456F 0.28 TCGA-FW-A3R5-06 1 215807904 215807904 C T USH2A Missense_Mutation p.R5065K 0.24 possibly_damaging(0.566) TCGA-FW-A3R5-06 1 215820886 215820886 G A USH2A Silent p.I4923I 0.36 TCGA-FW-A3R5-06 1 215844336 215844336 G A USH2A Missense_Mutation p.P4704L 0.22 probably_damaging(0.994) TCGA-FW-A3R5-06 1 215848098 215848098 C T USH2A Silent p.K4385K 0.09 TCGA-FW-A3R5-06 1 215848186 215848186 G A USH2A Missense_Mutation p.P4356L 0.15 probably_damaging(0.984) TCGA-FW-A3R5-06 1 215848305 215848305 G A USH2A Silent p.F4316F 0.32 TCGA-FW-A3R5-06 1 215901705 215901705 C T USH2A Silent p.E3911E 0.36 TCGA-FW-A3R5-06 1 215914768 215914768 C T USH2A Nonsense_Mutation p.W3887* 0.28 TCGA-FW-A3R5-06 1 21605853 21605853 G A ECE1 Intron 0.34 TCGA-FW-A3R5-06 1 216062391 216062391 C T USH2A Missense_Mutation p.G2534R 0.22 probably_damaging(0.945) TCGA-FW-A3R5-06 1 216172336 216172336 T C USH2A Missense_Mutation p.T2184A 0.24 benign(0.003) TCGA-FW-A3R5-06 1 216243581 216243581 T C USH2A Missense_Mutation p.I1971V 0.33 benign(0.008) TCGA-FW-A3R5-06 1 216348787 216348787 G A USH2A Silent p.I1478I 0.24 TCGA-FW-A3R5-06 1 216405294 216405294 C T USH2A Splice_Site p.X998_splice 0.16 TCGA-FW-A3R5-06 1 216420478 216420478 C T USH2A Missense_Mutation p.G753D 0.08 probably_damaging(1) TCGA-FW-A3R5-06 1 216496929 216496929 G A USH2A Silent p.F479F 0.08 TCGA-FW-A3R5-06 1 216497518 216497518 C T USH2A Silent p.Q440Q 0.27 TCGA-FW-A3R5-06 1 216498859 216498859 C T USH2A Missense_Mutation p.V311I 0.19 benign(0.232) TCGA-FW-A3R5-06 1 216595578 216595578 C T USH2A Missense_Mutation p.R34Q 0.28 benign(0) TCGA-FW-A3R5-06 1 216595616 216595616 G A USH2A Silent p.I21I 0.26 TCGA-FW-A3R5-06 1 216680433 216680433 C T ESRRG Missense_Mutation p.E421K 0.35 tolerated(0.26) probably_damaging(0.995) TCGA-FW-A3R5-06 1 216737577 216737577 C T ESRRG Nonsense_Mutation p.W294* 0.29 TCGA-FW-A3R5-06 1 216896691 216896691 C T ESRRG 5'UTR 0.27 TCGA-FW-A3R5-06 1 216896729 216896729 C T ESRRG 5'UTR 0.31 TCGA-FW-A3R5-06 1 217783509 217783509 G A GPATCH2 Intron 0.44 TCGA-FW-A3R5-06 1 218458698 218458698 G A RRP15 Missense_Mutation p.E14K 0.27 tolerated_low_confidence(0.83) benign(0) TCGA-FW-A3R5-06 1 218609363 218609363 C T TGFB2 Missense_Mutation p.S297F 0.33 deleterious(0.05) possibly_damaging(0.739) TCGA-FW-A3R5-06 1 21903920 21903920 G A ALPL Missense_Mutation p.E452K 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 220267642 220267642 C T IARS2 Silent p.P28P 0.20 TCGA-FW-A3R5-06 1 220307845 220307845 C T IARS2 Missense_Mutation p.P647S 0.21 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 1 220791985 220791985 G A MARK1 Missense_Mutation p.R266Q 0.24 deleterious(0.01) possibly_damaging(0.858) TCGA-FW-A3R5-06 1 220870013 220870013 C T C1orf115 Silent p.F123F 0.28 TCGA-FW-A3R5-06 1 220970064 220970064 C T MARC1 Missense_Mutation p.P177S 0.26 tolerated(0.13) benign(0.006) TCGA-FW-A3R5-06 1 220970065 220970065 C T MARC1 Missense_Mutation p.P177L 0.27 deleterious(0.02) benign(0.211) TCGA-FW-A3R5-06 1 220971262 220971262 C T MARC1 Missense_Mutation p.S220L 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 22140990 22140990 C T LDLRAD2 Missense_Mutation p.T62I 0.13 tolerated(0.06) benign(0.028) TCGA-FW-A3R5-06 1 22140991 22140991 C T LDLRAD2 Silent p.T62T 0.13 TCGA-FW-A3R5-06 1 22150770 22150770 G A LDLRAD2 3'UTR 0.35 TCGA-FW-A3R5-06 1 22156462 22156462 G A HSPG2 Intron 0.46 TCGA-FW-A3R5-06 1 22157780 22157780 G A HSPG2 Silent p.I3830I 0.19 TCGA-FW-A3R5-06 1 22157999 22157999 G A HSPG2 Silent p.D3803D 0.17 TCGA-FW-A3R5-06 1 22182404 22182404 G A HSPG2 Silent p.A1859A 0.31 TCGA-FW-A3R5-06 1 221912437 221912437 G A DUSP10 Missense_Mutation p.S217F 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 1 22191364 22191364 G A HSPG2 Missense_Mutation p.P1533L 0.15 probably_damaging(0.995) TCGA-FW-A3R5-06 1 22205510 22205510 G A HSPG2 Silent p.C816C 0.39 TCGA-FW-A3R5-06 1 22211865 22211865 G A HSPG2 Silent p.F386F 0.17 TCGA-FW-A3R5-06 1 222696018 222696018 C T HHIPL2 Silent p.R700R 0.27 TCGA-FW-A3R5-06 1 222713440 222713440 G A HHIPL2 Silent p.D454D 0.28 TCGA-FW-A3R5-06 1 222717183 222717183 G A HHIPL2 Missense_Mutation p.H224Y 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 222717466 222717466 G A HHIPL2 Silent p.L129L 0.29 TCGA-FW-A3R5-06 1 222737456 222737456 C T TAF1A Silent p.Q302Q 0.27 TCGA-FW-A3R5-06 1 222802183 222802183 C T MIA3 Missense_Mutation p.H541Y 0.10 deleterious(0.02) benign(0.174) TCGA-FW-A3R5-06 1 222818993 222818993 C T MIA3 Missense_Mutation p.S1192L 0.27 deleterious(0.02) benign(0.04) TCGA-FW-A3R5-06 1 22303555 22303555 C T CELA3B Missense_Mutation p.S8F 0.27 tolerated(0.34) benign(0) TCGA-FW-A3R5-06 1 22310278 22310278 C T CELA3B Missense_Mutation p.P152S 0.24 tolerated(0.14) benign(0.056) TCGA-FW-A3R5-06 1 22310748 22310748 C T CELA3B Missense_Mutation p.S189F 0.35 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 1 22313149 22313149 C T CELA3B Silent p.V256V 0.23 TCGA-FW-A3R5-06 1 223285203 223285203 G A TLR5 Missense_Mutation p.L391F 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 223285643 223285643 C T TLR5 Missense_Mutation p.G244E 0.26 tolerated(0.55) benign(0.011) TCGA-FW-A3R5-06 1 223285897 223285897 G A TLR5 Silent p.S159S 0.20 TCGA-FW-A3R5-06 1 22332005 22332005 C T CELA3A Silent p.P65P 0.10 TCGA-FW-A3R5-06 1 223465828 223465828 C T SUSD4 Missense_Mutation p.G105E 0.29 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 1 223465938 223465938 C T SUSD4 Silent p.R68R 0.24 TCGA-FW-A3R5-06 1 223567374 223567374 C T C1orf65 Missense_Mutation p.S186F 0.33 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 1 223567678 223567678 G A C1orf65 Silent p.L287L 0.25 TCGA-FW-A3R5-06 1 223946933 223946933 C T CAPN2 Intron 0.29 TCGA-FW-A3R5-06 1 224340893 224340893 C T FBXO28 Missense_Mutation p.A189V 0.21 tolerated(0.08) benign(0.186) TCGA-FW-A3R5-06 1 224345107 224345107 C T FBXO28 Missense_Mutation p.P256S 0.16 tolerated(0.16) probably_damaging(0.996) TCGA-FW-A3R5-06 1 224437953 224437953 G A NVL Silent p.P750P 0.20 TCGA-FW-A3R5-06 1 224437993 224437993 G A NVL Missense_Mutation p.P737L 0.27 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 224475603 224475603 G A NVL Silent p.F556F 0.30 TCGA-FW-A3R5-06 1 224804736 224804736 C T CNIH3 5'UTR 0.21 TCGA-FW-A3R5-06 1 224804900 224804900 C T CNIH3 Silent p.F8F 0.21 TCGA-FW-A3R5-06 1 225140444 225140444 C T DNAH14 Nonsense_Mutation p.Q14* 0.26 TCGA-FW-A3R5-06 1 225609926 225609926 G A LBR Silent p.S73S 0.09 TCGA-FW-A3R5-06 1 225702509 225702509 G A ENAH Missense_Mutation p.P336L 0.30 tolerated_low_confidence(0.26) probably_damaging(0.996) TCGA-FW-A3R5-06 1 225702558 225702558 G A ENAH Missense_Mutation p.P320S 0.25 tolerated_low_confidence(0.66) possibly_damaging(0.882) TCGA-FW-A3R5-06 1 226065251 226065251 C A TMEM63A Missense_Mutation p.W10C 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.503) TCGA-FW-A3R5-06 1 226108237 226108237 G A PYCR2 Missense_Mutation p.S294F 0.31 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-FW-A3R5-06 1 226125005 226125005 G A LEFTY2 3'UTR 0.30 TCGA-FW-A3R5-06 1 226413318 226413318 G A MIXL1 Silent p.T168T 0.33 TCGA-FW-A3R5-06 1 226453307 226453307 G A LIN9 Missense_Mutation p.P338L 0.24 deleterious(0.01) benign(0.217) TCGA-FW-A3R5-06 1 226496869 226496869 G A LIN9 Missense_Mutation p.P7L 0.32 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-FW-A3R5-06 1 226549171 226549171 G A PARP1 Missense_Mutation p.S1012F 0.12 deleterious_low_confidence(0) possibly_damaging(0.59) TCGA-FW-A3R5-06 1 226564933 226564933 G A PARP1 Missense_Mutation p.S606F 0.26 tolerated(0.14) possibly_damaging(0.872) TCGA-FW-A3R5-06 1 226570804 226570804 G A PARP1 Silent p.S364S 0.23 TCGA-FW-A3R5-06 1 226822414 226822414 G A ITPKB Silent p.V933V 0.35 TCGA-FW-A3R5-06 1 226923820 226923820 G A ITPKB Missense_Mutation p.S447F 0.28 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-FW-A3R5-06 1 227071564 227071564 C T PSEN2 Silent p.I100I 0.24 TCGA-FW-A3R5-06 1 227192761 227192761 G A CDC42BPA Missense_Mutation p.P1602S 0.22 tolerated(0.07) benign(0.053) TCGA-FW-A3R5-06 1 227216844 227216844 G A CDC42BPA Missense_Mutation p.P1281S 0.16 tolerated(0.11) possibly_damaging(0.523) TCGA-FW-A3R5-06 1 227400879 227400879 G A CDC42BPA Silent p.A104A 0.13 TCGA-FW-A3R5-06 1 227400880 227400880 G A CDC42BPA Missense_Mutation p.A104V 0.13 deleterious(0) possibly_damaging(0.903) TCGA-FW-A3R5-06 1 227618340 227618340 G A CTD-2090I13.1 RNA 0.22 TCGA-FW-A3R5-06 1 227618464 227618464 C T CTD-2090I13.1 RNA 0.31 TCGA-FW-A3R5-06 1 227843293 227843293 C T ZNF678 Missense_Mutation p.L448F 0.24 deleterious(0.03) probably_damaging(0.974) TCGA-FW-A3R5-06 1 228210584 228210584 C T WNT3A Silent p.A96A 0.40 TCGA-FW-A3R5-06 1 228247937 228247937 C G WNT3A 3'UTR 0.27 TCGA-FW-A3R5-06 1 22834550 22834550 C T ZBTB40 Missense_Mutation p.L473F 0.21 tolerated(0.18) unknown(0) TCGA-FW-A3R5-06 1 22838343 22838343 C T ZBTB40 Missense_Mutation p.S726L 0.22 tolerated(0.05) unknown(0) TCGA-FW-A3R5-06 1 228402555 228402555 C T OBSCN Silent p.S528S 0.37 TCGA-FW-A3R5-06 1 228461637 228461637 C A OBSCN Silent p.A2143A 0.25 TCGA-FW-A3R5-06 1 228467731 228467731 G A OBSCN Missense_Mutation p.G2965S 0.29 probably_damaging(1) TCGA-FW-A3R5-06 1 228467761 228467761 C T OBSCN Missense_Mutation p.H2975Y 0.26 possibly_damaging(0.502) TCGA-FW-A3R5-06 1 228469732 228469732 G A OBSCN Missense_Mutation p.D3195N 0.41 probably_damaging(0.988) TCGA-FW-A3R5-06 1 228473972 228473972 G A OBSCN Silent p.R3495R 0.27 TCGA-FW-A3R5-06 1 228474494 228474494 C T OBSCN Missense_Mutation p.R3529W 0.33 benign(0.066) TCGA-FW-A3R5-06 1 228479639 228479639 G A OBSCN Silent p.E3889E 0.27 TCGA-FW-A3R5-06 1 228479753 228479753 G A OBSCN Silent p.Q3927Q 0.31 TCGA-FW-A3R5-06 1 228480406 228480406 C T OBSCN Missense_Mutation p.R4025C 0.28 benign(0.001) TCGA-FW-A3R5-06 1 228481217 228481217 C T OBSCN Silent p.A4106A 0.40 TCGA-FW-A3R5-06 1 228482721 228482721 C T OBSCN Missense_Mutation p.T4308I 0.28 probably_damaging(0.999) TCGA-FW-A3R5-06 1 228486318 228486318 G A OBSCN Silent p.T4370T 0.28 TCGA-FW-A3R5-06 1 228487768 228487768 G A OBSCN Missense_Mutation p.G4554S 0.30 probably_damaging(0.953) TCGA-FW-A3R5-06 1 228491481 228491481 G A OBSCN Missense_Mutation p.R4615Q 0.28 possibly_damaging(0.857) TCGA-FW-A3R5-06 1 228505603 228505603 G A OBSCN Silent p.P5577P 0.21 TCGA-FW-A3R5-06 1 228509173 228509173 G A OBSCN Silent p.V5834V 0.40 TCGA-FW-A3R5-06 1 228509413 228509413 G A OBSCN Silent p.L5914L 0.29 TCGA-FW-A3R5-06 1 228509866 228509866 C T OBSCN Silent p.A6065A 0.34 TCGA-FW-A3R5-06 1 228525050 228525050 C T OBSCN Missense_Mutation p.S6546F 0.20 probably_damaging(0.999) TCGA-FW-A3R5-06 1 228525070 228525070 G A OBSCN Missense_Mutation p.D6553N 0.24 probably_damaging(0.999) TCGA-FW-A3R5-06 1 228525721 228525721 G A OBSCN Missense_Mutation p.G6583D 0.41 probably_damaging(1) TCGA-FW-A3R5-06 1 228525785 228525785 C T OBSCN Silent p.T6604T 0.21 TCGA-FW-A3R5-06 1 228526038 228526038 G A OBSCN Silent p.E6640E 0.43 TCGA-FW-A3R5-06 1 228547304 228547304 G A OBSCN Intron 0.43 TCGA-FW-A3R5-06 1 228547865 228547865 G A OBSCN Intron 0.47 TCGA-FW-A3R5-06 1 228556048 228556048 C T OBSCN Silent p.V7523V 0.25 TCGA-FW-A3R5-06 1 228559458 228559458 C T OBSCN Silent p.A7950A 0.15 TCGA-FW-A3R5-06 1 228559601 228559601 C T OBSCN Missense_Mutation p.S7998F 0.26 possibly_damaging(0.558) TCGA-FW-A3R5-06 1 228560541 228560541 C T OBSCN Silent p.P8311P 0.50 TCGA-FW-A3R5-06 1 228562353 228562353 G A OBSCN Silent p.L8478L 0.28 TCGA-FW-A3R5-06 1 228584602 228584602 G A TRIM11 Intron 0.33 TCGA-FW-A3R5-06 1 228879409 228879409 G A RHOU Silent p.K233K 0.26 TCGA-FW-A3R5-06 1 2288981 2288981 G A MORN1 Missense_Mutation p.P309L 0.28 tolerated(0.15) benign(0.035) TCGA-FW-A3R5-06 1 2288982 2288982 G A MORN1 Missense_Mutation p.P309S 0.28 tolerated(0.11) benign(0.139) TCGA-FW-A3R5-06 1 22902738 22902738 C T EPHA8 Missense_Mutation p.S63F 0.26 tolerated(0.12) benign(0.002) TCGA-FW-A3R5-06 1 22915379 22915379 C T EPHA8 Missense_Mutation p.P332L 0.33 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 1 22916000 22916000 G A EPHA8 Intron 0.30 TCGA-FW-A3R5-06 1 22922660 22922660 G A EPHA8 Missense_Mutation p.G587R 0.19 tolerated(0.09) benign(0.027) TCGA-FW-A3R5-06 1 22927561 22927561 G A EPHA8 Silent p.R903R 0.36 TCGA-FW-A3R5-06 1 22927862 22927862 C T EPHA8 Silent p.L933L 0.18 TCGA-FW-A3R5-06 1 229460901 229460901 G C CCSAP 3'UTR 0.36 TCGA-FW-A3R5-06 1 229568311 229568311 C T ACTA1 Missense_Mutation p.R149K 0.29 deleterious_low_confidence(0.02) benign(0.001) TCGA-FW-A3R5-06 1 229568553 229568553 G A ACTA1 Silent p.T68T 0.26 TCGA-FW-A3R5-06 1 229568554 229568554 G A ACTA1 Missense_Mutation p.T68I 0.27 tolerated_low_confidence(0.05) probably_damaging(0.977) TCGA-FW-A3R5-06 1 22965719 22965719 C T C1QA Missense_Mutation p.S186F 0.18 tolerated(0.13) benign(0.15) TCGA-FW-A3R5-06 1 229738200 229738200 G A TAF5L Silent p.A238A 0.09 TCGA-FW-A3R5-06 1 22974025 22974025 C T C1QC Missense_Mutation p.P163S 0.22 deleterious(0.05) probably_damaging(0.957) TCGA-FW-A3R5-06 1 229771485 229771485 C T URB2 Silent p.I375I 0.33 TCGA-FW-A3R5-06 1 229772115 229772115 C T URB2 Silent p.A585A 0.27 TCGA-FW-A3R5-06 1 229772297 229772297 C T URB2 Missense_Mutation p.S646L 0.23 tolerated(0.53) benign(0.001) TCGA-FW-A3R5-06 1 229772656 229772656 C T URB2 Silent p.L766L 0.29 TCGA-FW-A3R5-06 1 22987444 22987444 C T C1QB Silent p.P109P 0.22 TCGA-FW-A3R5-06 1 22987911 22987911 C T C1QB 3'UTR 0.30 TCGA-FW-A3R5-06 1 230338999 230338999 C T GALNT2 Nonsense_Mutation p.R113* 0.29 TCGA-FW-A3R5-06 1 230492691 230492691 G A PGBD5 Silent p.L167L 0.23 TCGA-FW-A3R5-06 1 230798890 230798890 C T COG2 Missense_Mutation p.L102F 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 1 230841825 230841825 C T AGT Silent p.Q326Q 0.21 TCGA-FW-A3R5-06 1 230846180 230846180 G A AGT Silent p.V139V 0.32 TCGA-FW-A3R5-06 1 230916261 230916261 G A CAPN9 Missense_Mutation p.E430K 0.27 tolerated(0.9) benign(0.228) TCGA-FW-A3R5-06 1 230916267 230916267 C T CAPN9 Silent p.L432L 0.26 TCGA-FW-A3R5-06 1 230928654 230928654 G A CAPN9 Missense_Mutation p.R617Q 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 230928655 230928655 G A CAPN9 Silent p.R617R 0.36 TCGA-FW-A3R5-06 1 231155655 231155655 G A FAM89A Missense_Mutation p.P170L 0.08 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 1 231335984 231335984 G A TRIM67 Missense_Mutation p.D452N 0.29 tolerated(0.06) probably_damaging(0.99) TCGA-FW-A3R5-06 1 231360004 231360004 C T C1orf131 3'UTR 0.20 TCGA-FW-A3R5-06 1 23191528 23191528 G A EPHB2 Missense_Mutation p.G376R 0.29 tolerated(0.09) benign(0.139) TCGA-FW-A3R5-06 1 23219402 23219402 C T EPHB2 Missense_Mutation p.A485V 0.34 tolerated(0.42) benign(0.001) TCGA-FW-A3R5-06 1 23236971 23236971 C T EPHB2 Missense_Mutation p.R868C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 1 23237025 23237025 C T EPHB2 Missense_Mutation p.R886C 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 23237062 23237062 C T EPHB2 Missense_Mutation p.S898F 0.23 deleterious(0.02) possibly_damaging(0.476) TCGA-FW-A3R5-06 1 23238964 23238964 G A EPHB2 Silent p.T909T 0.24 TCGA-FW-A3R5-06 1 23239966 23239966 G T EPHB2 Missense_Mutation p.R956L 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-FW-A3R5-06 1 232551301 232551301 G A SIPA1L2 Silent p.L1567L 0.23 TCGA-FW-A3R5-06 1 232561373 232561373 G A SIPA1L2 Missense_Mutation p.P1531L 0.40 tolerated(0.11) possibly_damaging(0.905) TCGA-FW-A3R5-06 1 232561550 232561550 G A SIPA1L2 Missense_Mutation p.S1472L 0.21 tolerated(0.34) benign(0.034) TCGA-FW-A3R5-06 1 232581315 232581315 G A SIPA1L2 Nonsense_Mutation p.R1105* 0.21 TCGA-FW-A3R5-06 1 232651033 232651033 G A SIPA1L2 Missense_Mutation p.S18F 0.10 deleterious_low_confidence(0.02) benign(0.372) TCGA-FW-A3R5-06 1 232941087 232941087 C T MAP10 Silent p.I106I 0.22 TCGA-FW-A3R5-06 1 232941806 232941806 G A MAP10 Missense_Mutation p.G346E 0.25 tolerated(0.15) benign(0.414) TCGA-FW-A3R5-06 1 233134126 233134126 C A PCNXL2 Nonsense_Mutation p.G1888* 0.15 TCGA-FW-A3R5-06 1 233137405 233137405 G A PCNXL2 Missense_Mutation p.L1659F 0.28 tolerated(0.11) probably_damaging(0.937) TCGA-FW-A3R5-06 1 233150438 233150438 C T PCNXL2 Missense_Mutation p.G1642E 0.26 deleterious(0) possibly_damaging(0.563) TCGA-FW-A3R5-06 1 233150519 233150519 G A PCNXL2 Missense_Mutation p.S1615L 0.23 tolerated(0.23) benign(0.01) TCGA-FW-A3R5-06 1 233190032 233190032 G A PCNXL2 Nonsense_Mutation p.R1445* 0.23 TCGA-FW-A3R5-06 1 233231504 233231504 G A PCNXL2 Missense_Mutation p.P1315S 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-FW-A3R5-06 1 233270846 233270846 G A PCNXL2 Silent p.F1250F 0.34 TCGA-FW-A3R5-06 1 233275579 233275579 G A PCNXL2 Silent p.F1180F 0.73 TCGA-FW-A3R5-06 1 233296028 233296028 C T PCNXL2 Splice_Site p.X1173_splice 0.31 TCGA-FW-A3R5-06 1 233296076 233296076 G A PCNXL2 Missense_Mutation p.S1157L 0.32 deleterious(0) benign(0.234) TCGA-FW-A3R5-06 1 233297093 233297093 C T PCNXL2 Nonsense_Mutation p.W1097* 0.17 TCGA-FW-A3R5-06 1 233313560 233313560 C T PCNXL2 Missense_Mutation p.M1087I 0.31 deleterious(0) benign(0.131) TCGA-FW-A3R5-06 1 233335967 233335967 G A PCNXL2 Silent p.F969F 0.45 TCGA-FW-A3R5-06 1 233353658 233353658 G A PCNXL2 Missense_Mutation p.A893V 0.12 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 1 233353659 233353659 C A PCNXL2 Missense_Mutation p.A893S 0.12 tolerated(0.17) possibly_damaging(0.802) TCGA-FW-A3R5-06 1 233372591 233372591 C T PCNXL2 Silent p.R786R 0.17 TCGA-FW-A3R5-06 1 233372723 233372723 C T PCNXL2 Silent p.E742E 0.21 TCGA-FW-A3R5-06 1 233388106 233388106 C T PCNXL2 Missense_Mutation p.E708K 0.25 deleterious(0.02) benign(0.254) TCGA-FW-A3R5-06 1 233393906 233393906 C T PCNXL2 Missense_Mutation p.G568R 0.20 deleterious(0) benign(0.334) TCGA-FW-A3R5-06 1 233394038 233394038 C T PCNXL2 Missense_Mutation p.E524K 0.27 tolerated(0.24) possibly_damaging(0.837) TCGA-FW-A3R5-06 1 233394087 233394087 C T PCNXL2 Silent p.G507G 0.27 TCGA-FW-A3R5-06 1 233394269 233394269 C T PCNXL2 Missense_Mutation p.E447K 0.37 deleterious_low_confidence(0.03) benign(0.178) TCGA-FW-A3R5-06 1 233397849 233397849 G A PCNXL2 Missense_Mutation p.P141L 0.09 deleterious(0.03) possibly_damaging(0.743) TCGA-FW-A3R5-06 1 233489572 233489572 G A MLK4 Missense_Mutation p.E336K 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 233507881 233507881 G A MLK4 Missense_Mutation p.M550I 0.27 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 1 233514787 233514787 C T MLK4 Nonsense_Mutation p.Q679* 0.30 TCGA-FW-A3R5-06 1 233514953 233514953 C T MLK4 Missense_Mutation p.A734V 0.27 tolerated(0.1) possibly_damaging(0.541) TCGA-FW-A3R5-06 1 233515037 233515037 G A MLK4 Missense_Mutation p.G762E 0.19 deleterious(0.01) benign(0.086) TCGA-FW-A3R5-06 1 233749941 233749941 C T KCNK1 Silent p.S8S 0.26 TCGA-FW-A3R5-06 1 233807177 233807177 C T KCNK1 Silent p.I304I 0.11 TCGA-FW-A3R5-06 1 234041375 234041375 G A SLC35F3 Missense_Mutation p.E52K 0.24 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-FW-A3R5-06 1 234367233 234367233 G A SLC35F3 Silent p.G118G 0.37 TCGA-FW-A3R5-06 1 234452365 234452365 C T SLC35F3 Silent p.L282L 0.28 TCGA-FW-A3R5-06 1 234458964 234458964 G A SLC35F3 Missense_Mutation p.R483K 0.19 tolerated_low_confidence(0.36) benign(0.355) TCGA-FW-A3R5-06 1 234509379 234509379 C T COA6 5'Flank 0.10 TCGA-FW-A3R5-06 1 234553868 234553868 G A TARBP1 Missense_Mutation p.P1223S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 235715446 235715446 G A GNG4 Missense_Mutation p.P64L 0.28 deleterious(0.02) possibly_damaging(0.766) TCGA-FW-A3R5-06 1 235969221 235969221 G A LYST Missense_Mutation p.S1072F 0.40 tolerated_low_confidence(0.07) benign(0.44) TCGA-FW-A3R5-06 1 236205533 236205533 G A NID1 Missense_Mutation p.T271I 0.30 tolerated(0.59) benign(0.002) TCGA-FW-A3R5-06 1 236205562 236205562 C T NID1 Nonsense_Mutation p.W261* 0.23 TCGA-FW-A3R5-06 1 236205563 236205563 C T NID1 Nonsense_Mutation p.W261* 0.23 TCGA-FW-A3R5-06 1 236208779 236208779 C T NID1 Missense_Mutation p.E244K 0.29 tolerated(0.14) benign(0.02) TCGA-FW-A3R5-06 1 236212147 236212147 C T NID1 Missense_Mutation p.R123Q 0.24 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 1 236647815 236647815 C T EDARADD 3'Flank 0.14 TCGA-FW-A3R5-06 1 236755334 236755334 G A HEATR1 Missense_Mutation p.H461Y 0.19 deleterious(0) probably_damaging(0.942) TCGA-FW-A3R5-06 1 236898958 236898958 G A ACTN2 Missense_Mutation p.D241N 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 236902620 236902620 C T ACTN2 Missense_Mutation p.R299C 0.26 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 1 236902625 236902625 G A ACTN2 Silent p.T300T 0.30 TCGA-FW-A3R5-06 1 236925843 236925843 C T ACTN2 Missense_Mutation p.S870L 0.16 tolerated(0.24) benign(0.009) TCGA-FW-A3R5-06 1 236925888 236925888 C T ACTN2 Missense_Mutation p.S885F 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 236925911 236925911 G A ACTN2 Missense_Mutation p.D893N 0.26 deleterious(0.04) benign(0.151) TCGA-FW-A3R5-06 1 237037098 237037098 C T MTR Missense_Mutation p.P811S 0.23 tolerated(0.07) probably_damaging(0.965) TCGA-FW-A3R5-06 1 237037099 237037099 C T MTR Missense_Mutation p.P811L 0.24 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 23724045 23724045 G A TCEA3 Silent p.I219I 0.35 TCGA-FW-A3R5-06 1 237538048 237538048 C T RYR2 Missense_Mutation p.S139L 0.30 benign(0.174) TCGA-FW-A3R5-06 1 23758277 23758277 C T ASAP3 Missense_Mutation p.E820K 0.30 tolerated_low_confidence(0.1) benign(0.046) TCGA-FW-A3R5-06 1 237604620 237604620 A G RYR2 Missense_Mutation p.E336G 0.31 probably_damaging(0.927) TCGA-FW-A3R5-06 1 237617862 237617862 C T RYR2 Silent p.L488L 0.19 TCGA-FW-A3R5-06 1 23763160 23763160 G A ASAP3 Intron 0.32 TCGA-FW-A3R5-06 1 237753151 237753151 G A RYR2 Silent p.K1219K 0.23 TCGA-FW-A3R5-06 1 237791147 237791147 G A RYR2 Nonsense_Mutation p.W2069* 0.18 TCGA-FW-A3R5-06 1 237791148 237791148 G A RYR2 Missense_Mutation p.A2070T 0.17 possibly_damaging(0.589) TCGA-FW-A3R5-06 1 237796914 237796914 C T RYR2 Missense_Mutation p.R2198C 0.23 probably_damaging(1) TCGA-FW-A3R5-06 1 237801785 237801785 C T RYR2 Silent p.F2307F 0.13 TCGA-FW-A3R5-06 1 23782434 23782434 G A ASAP3 Silent p.S96S 0.29 TCGA-FW-A3R5-06 1 23782435 23782435 G A ASAP3 Missense_Mutation p.S96F 0.29 deleterious(0.02) possibly_damaging(0.533) TCGA-FW-A3R5-06 1 237863598 237863598 G A RYR2 Silent p.E3066E 0.31 TCGA-FW-A3R5-06 1 237936946 237936946 C T RYR2 Nonsense_Mutation p.Q3925* 0.38 TCGA-FW-A3R5-06 1 237947048 237947048 G A RYR2 Missense_Mutation p.M4012I 0.21 possibly_damaging(0.876) TCGA-FW-A3R5-06 1 237947463 237947463 G A RYR2 Missense_Mutation p.E4151K 0.39 probably_damaging(0.997) TCGA-FW-A3R5-06 1 237947667 237947667 G A RYR2 Missense_Mutation p.E4219K 0.18 benign(0.388) TCGA-FW-A3R5-06 1 237947903 237947903 C T RYR2 Silent p.F4297F 0.29 TCGA-FW-A3R5-06 1 237993860 237993860 G A RYR2 Missense_Mutation p.D4896N 0.11 possibly_damaging(0.665) TCGA-FW-A3R5-06 1 238045810 238045810 A T ZP4 Missense_Mutation p.L512H 0.29 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 1 238045826 238045826 G A ZP4 Silent p.L507L 0.24 TCGA-FW-A3R5-06 1 238049074 238049074 C T ZP4 Missense_Mutation p.E318K 0.14 deleterious(0.02) probably_damaging(0.938) TCGA-FW-A3R5-06 1 238053390 238053390 C T ZP4 Missense_Mutation p.E88K 0.30 tolerated(0.26) benign(0.269) TCGA-FW-A3R5-06 1 238090203 238090203 G A RP11-193H5.1 RNA 0.23 TCGA-FW-A3R5-06 1 238090588 238090588 G A RP11-193H5.1 RNA 0.24 TCGA-FW-A3R5-06 1 23908127 23908127 C T MDS2 RNA 0.32 TCGA-FW-A3R5-06 1 240071103 240071103 G A CHRM3 Missense_Mutation p.G118R 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 240071520 240071520 G A CHRM3 Missense_Mutation p.E257K 0.26 deleterious(0) possibly_damaging(0.814) TCGA-FW-A3R5-06 1 240256102 240256102 G A FMN2 Silent p.E231E 0.26 TCGA-FW-A3R5-06 1 240256738 240256738 C T FMN2 Silent p.I443I 0.14 TCGA-FW-A3R5-06 1 240286576 240286576 C T FMN2 Silent p.L571L 0.25 TCGA-FW-A3R5-06 1 240286601 240286601 G A FMN2 Missense_Mutation p.E580K 0.28 unknown(0) TCGA-FW-A3R5-06 1 240341321 240341321 C T FMN2 Missense_Mutation p.P628L 0.21 unknown(0) TCGA-FW-A3R5-06 1 240341341 240341341 G A FMN2 Missense_Mutation p.E635K 0.24 unknown(0) TCGA-FW-A3R5-06 1 240370099 240370099 G A FMN2 Missense_Mutation p.E663K 0.19 unknown(0) TCGA-FW-A3R5-06 1 240370122 240370122 G A FMN2 Silent p.E670E 0.23 TCGA-FW-A3R5-06 1 240370490 240370490 G A FMN2 Missense_Mutation p.R793Q 0.19 unknown(0) TCGA-FW-A3R5-06 1 240370507 240370507 G A FMN2 Missense_Mutation p.D799N 0.22 unknown(0) TCGA-FW-A3R5-06 1 240370636 240370636 G A FMN2 Missense_Mutation p.E842K 0.26 unknown(0) TCGA-FW-A3R5-06 1 240370697 240370697 C T FMN2 Missense_Mutation p.P862L 0.18 unknown(0) TCGA-FW-A3R5-06 1 240370850 240370850 C T FMN2 Missense_Mutation p.P913L 0.31 unknown(0) TCGA-FW-A3R5-06 1 240371007 240371007 C T FMN2 Silent p.P965P 0.25 TCGA-FW-A3R5-06 1 240371224 240371224 G A FMN2 Missense_Mutation p.G1038R 0.16 unknown(0) TCGA-FW-A3R5-06 1 240371353 240371353 C T FMN2 Missense_Mutation p.P1081S 0.23 unknown(0) TCGA-FW-A3R5-06 1 240371608 240371608 C T FMN2 Missense_Mutation p.P1166S 0.40 unknown(0) TCGA-FW-A3R5-06 1 240371732 240371732 C T FMN2 Missense_Mutation p.P1207L 0.40 unknown(0) TCGA-FW-A3R5-06 1 240371795 240371795 C T FMN2 Missense_Mutation p.P1228L 0.36 benign(0.012) TCGA-FW-A3R5-06 1 240374523 240374523 G A FMN2 Silent p.T1351T 0.26 TCGA-FW-A3R5-06 1 240493995 240493995 G A FMN2 Silent p.Q1510Q 0.16 TCGA-FW-A3R5-06 1 240497465 240497465 G A FMN2 Silent p.Q1567Q 0.28 TCGA-FW-A3R5-06 1 240635690 240635690 G A FMN2 Silent p.E1693E 0.25 TCGA-FW-A3R5-06 1 240637445 240637445 G A FMN2 Missense_Mutation p.M1720I 0.17 benign(0.035) TCGA-FW-A3R5-06 1 2408075 2408075 G A PLCH2 Intron 0.36 TCGA-FW-A3R5-06 1 24082811 24082811 C T TCEB3 Missense_Mutation p.R700C 0.33 tolerated(0.09) benign(0.043) TCGA-FW-A3R5-06 1 240976925 240976925 C T RGS7 Missense_Mutation p.E317K 0.30 deleterious(0.02) benign(0.154) TCGA-FW-A3R5-06 1 2411249 2411249 C T PLCH2 Silent p.F89F 0.31 TCGA-FW-A3R5-06 1 241262032 241262032 C T RGS7 Missense_Mutation p.E37K 0.39 deleterious(0.04) probably_damaging(0.979) TCGA-FW-A3R5-06 1 24140689 24140689 G A HMGCL Missense_Mutation p.S163F 0.30 deleterious(0) benign(0.239) TCGA-FW-A3R5-06 1 2416007 2416007 G A PLCH2 Missense_Mutation p.D229N 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-FW-A3R5-06 1 241725561 241725561 C T KMO Missense_Mutation p.R182C 0.20 deleterious(0.04) benign(0.192) TCGA-FW-A3R5-06 1 2418758 2418758 C T PLCH2 Nonsense_Mutation p.Q326* 0.16 TCGA-FW-A3R5-06 1 241953905 241953905 G A WDR64 Missense_Mutation p.M958I 0.07 tolerated(0.09) benign(0.002) TCGA-FW-A3R5-06 1 241964441 241964441 G A WDR64 Missense_Mutation p.R1057Q 0.25 tolerated(0.06) benign(0.067) TCGA-FW-A3R5-06 1 24201316 24201316 G A CNR2 Silent p.L264L 0.11 TCGA-FW-A3R5-06 1 242042065 242042065 C T EXO1 Missense_Mutation p.S510L 0.27 tolerated(0.06) benign(0.15) TCGA-FW-A3R5-06 1 242383335 242383335 G A PLD5 Silent p.H230H 0.23 TCGA-FW-A3R5-06 1 242383356 242383356 G A PLD5 Silent p.F223F 0.11 TCGA-FW-A3R5-06 1 242383365 242383365 C T PLD5 Silent p.Q220Q 0.21 TCGA-FW-A3R5-06 1 2430192 2430192 C T PLCH2 Missense_Mutation p.P760S 0.26 deleterious(0.01) possibly_damaging(0.779) TCGA-FW-A3R5-06 1 243354563 243354563 G A CEP170 Missense_Mutation p.P289S 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-FW-A3R5-06 1 2436319 2436319 C T PLCH2 3'UTR 0.39 TCGA-FW-A3R5-06 1 24388527 24388527 C T MYOM3 Silent p.L1281L 0.22 TCGA-FW-A3R5-06 1 24390596 24390596 C T MYOM3 Silent p.G1196G 0.23 TCGA-FW-A3R5-06 1 24392293 24392293 C T MYOM3 Intron 0.12 TCGA-FW-A3R5-06 1 24411015 24411015 C T MYOM3 Missense_Mutation p.R638Q 0.10 tolerated(0.22) benign(0.21) TCGA-FW-A3R5-06 1 24432531 24432531 C T MYOM3 Missense_Mutation p.E147K 0.25 deleterious(0.01) benign(0.049) TCGA-FW-A3R5-06 1 24432540 24432540 C T MYOM3 Missense_Mutation p.E144K 0.26 tolerated(0.43) benign(0.061) TCGA-FW-A3R5-06 1 24433686 24433686 C T MYOM3 Silent p.E93E 0.20 TCGA-FW-A3R5-06 1 24434576 24434576 G A MYOM3 Intron 0.24 TCGA-FW-A3R5-06 1 24435081 24435081 G A MYOM3 Missense_Mutation p.P16S 0.44 tolerated_low_confidence(0.16) benign(0.003) TCGA-FW-A3R5-06 1 24447993 24447993 G A IL22RA1 Missense_Mutation p.P343S 0.32 tolerated(0.16) benign(0.004) TCGA-FW-A3R5-06 1 24483492 24483492 C T IFNLR1 3'UTR 0.15 TCGA-FW-A3R5-06 1 24483555 24483555 G A IFNLR1 3'UTR 0.24 TCGA-FW-A3R5-06 1 24483700 24483700 C T IFNLR1 Missense_Mutation p.D495N 0.16 tolerated(0.32) benign(0.001) TCGA-FW-A3R5-06 1 24483953 24483953 C T IFNLR1 Silent p.K410K 0.11 TCGA-FW-A3R5-06 1 24669185 24669185 G A GRHL3 Missense_Mutation p.G403E 0.24 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 24671403 24671403 G A GRHL3 Missense_Mutation p.G479E 0.21 tolerated(1) benign(0.058) TCGA-FW-A3R5-06 1 246811221 246811221 C T CNST Missense_Mutation p.S573F 0.18 tolerated(0.23) benign(0.258) TCGA-FW-A3R5-06 1 246829020 246829020 C T CNST Missense_Mutation p.S664F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 24696301 24696301 C T STPG1 Silent p.V200V 0.10 TCGA-FW-A3R5-06 1 24706163 24706163 G A STPG1 Missense_Mutation p.P148S 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 247063417 247063417 G A AHCTF1 Missense_Mutation p.P470L 0.25 deleterious(0.03) possibly_damaging(0.642) TCGA-FW-A3R5-06 1 247151348 247151348 G A ZNF695 Nonsense_Mutation p.Q157* 0.19 TCGA-FW-A3R5-06 1 247202116 247202116 G A ZNF670 Silent p.L63L 0.15 TCGA-FW-A3R5-06 1 247464567 247464567 G A ZNF496 Missense_Mutation p.P340S 0.16 tolerated(0.31) benign(0.004) TCGA-FW-A3R5-06 1 247582117 247582117 C T NLRP3 Silent p.R7R 0.23 TCGA-FW-A3R5-06 1 247587231 247587231 G A NLRP3 Silent p.V162V 0.20 TCGA-FW-A3R5-06 1 247587813 247587813 G A NLRP3 Silent p.E356E 0.23 TCGA-FW-A3R5-06 1 247588020 247588020 G A NLRP3 Silent p.Q425Q 0.28 TCGA-FW-A3R5-06 1 247588200 247588200 G A NLRP3 Silent p.E485E 0.29 TCGA-FW-A3R5-06 1 247588260 247588260 G A NLRP3 Missense_Mutation p.M505I 0.35 tolerated(0.19) benign(0.005) TCGA-FW-A3R5-06 1 247588598 247588598 C T NLRP3 Missense_Mutation p.A618V 0.23 tolerated(0.22) benign(0.023) TCGA-FW-A3R5-06 1 247597449 247597449 C T NLRP3 Missense_Mutation p.S791F 0.30 deleterious(0.01) possibly_damaging(0.904) TCGA-FW-A3R5-06 1 247597450 247597450 C T NLRP3 Silent p.S791S 0.28 TCGA-FW-A3R5-06 1 247607363 247607363 G A NLRP3 Missense_Mutation p.R920Q 0.26 tolerated(0.14) benign(0.048) TCGA-FW-A3R5-06 1 247607993 247607993 C T NLRP3 Missense_Mutation p.L961F 0.29 deleterious(0.03) probably_damaging(0.918) TCGA-FW-A3R5-06 1 247608109 247608109 C T NLRP3 Silent p.L999L 0.10 TCGA-FW-A3R5-06 1 247614630 247614630 G A OR2B11 Missense_Mutation p.L219F 0.15 deleterious(0.03) benign(0.066) TCGA-FW-A3R5-06 1 247614655 247614655 G A OR2B11 Silent p.F210F 0.30 TCGA-FW-A3R5-06 1 247614802 247614802 G A OR2B11 Silent p.F161F 0.16 TCGA-FW-A3R5-06 1 247654918 247654918 G A OR2W5 RNA 0.35 TCGA-FW-A3R5-06 1 247694809 247694809 C T OR2C3 3'UTR 0.28 TCGA-FW-A3R5-06 1 247694899 247694899 C T OR2C3 Missense_Mutation p.M305I 0.26 tolerated(0.21) benign(0) TCGA-FW-A3R5-06 1 247694907 247694907 G A OR2C3 Missense_Mutation p.R303W 0.27 deleterious(0.01) benign(0.002) TCGA-FW-A3R5-06 1 247712462 247712462 C T GCSAML 5'UTR 0.09 TCGA-FW-A3R5-06 1 247737544 247737544 G A GCSAML Missense_Mutation p.E90K 0.26 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 247737658 247737658 G A GCSAML Missense_Mutation p.D128N 0.31 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 247737718 247737718 G A GCSAML 3'UTR 0.30 TCGA-FW-A3R5-06 1 247751770 247751770 C T OR2G2 Silent p.L37L 0.29 TCGA-FW-A3R5-06 1 247751996 247751996 C T OR2G2 Missense_Mutation p.S112F 0.28 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 1 247752561 247752561 G A OR2G2 Silent p.V300V 0.26 TCGA-FW-A3R5-06 1 247768993 247768993 C T OR2G3 Missense_Mutation p.L36F 0.28 tolerated(0.1) benign(0.016) TCGA-FW-A3R5-06 1 247769160 247769160 G A OR2G3 Silent p.T91T 0.09 TCGA-FW-A3R5-06 1 247769386 247769386 C T OR2G3 Missense_Mutation p.P167S 0.31 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 1 247835510 247835510 C T OR13G1 Silent p.V278V 0.08 TCGA-FW-A3R5-06 1 247836280 247836280 C T OR13G1 Missense_Mutation p.G22R 0.34 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 1 247875172 247875172 C T OR6F1 Missense_Mutation p.E296K 0.29 tolerated(0.13) benign(0.03) TCGA-FW-A3R5-06 1 247875287 247875287 G A OR6F1 Silent p.F257F 0.25 TCGA-FW-A3R5-06 1 247875780 247875780 G A OR6F1 Missense_Mutation p.S93L 0.18 deleterious(0.01) benign(0.049) TCGA-FW-A3R5-06 1 247875795 247875795 C T OR6F1 Missense_Mutation p.R88K 0.30 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 247920864 247920864 G A OR1C1 Missense_Mutation p.A282V 0.33 deleterious(0.01) benign(0.067) TCGA-FW-A3R5-06 1 247921186 247921186 G A OR1C1 Missense_Mutation p.H175Y 0.25 deleterious(0.04) possibly_damaging(0.703) TCGA-FW-A3R5-06 1 247921586 247921586 C T OR1C1 Silent p.G41G 0.24 TCGA-FW-A3R5-06 1 248004718 248004718 G A OR11L1 Silent p.L161L 0.24 TCGA-FW-A3R5-06 1 248005088 248005088 C T OR11L1 Silent p.L37L 0.24 TCGA-FW-A3R5-06 1 248005100 248005100 G A OR11L1 Silent p.L33L 0.25 TCGA-FW-A3R5-06 1 248039286 248039286 G A TRIM58 Nonsense_Mutation p.W319* 0.39 TCGA-FW-A3R5-06 1 248039405 248039405 G A TRIM58 Missense_Mutation p.G359S 0.30 tolerated(0.07) possibly_damaging(0.665) TCGA-FW-A3R5-06 1 248039742 248039742 C T TRIM58 Missense_Mutation p.S471F 0.26 tolerated_low_confidence(0.11) benign(0.265) TCGA-FW-A3R5-06 1 248059369 248059369 C T OR2W3 Missense_Mutation p.P161S 0.31 tolerated(0.69) benign(0.219) TCGA-FW-A3R5-06 1 248059419 248059419 C T OR2W3 Silent p.F177F 0.18 TCGA-FW-A3R5-06 1 248084349 248084349 C T OR2T8 Silent p.F10F 0.26 TCGA-FW-A3R5-06 1 248084466 248084466 G A OR2T8 Nonsense_Mutation p.W49* 0.17 TCGA-FW-A3R5-06 1 248085211 248085211 G A OR2T8 Missense_Mutation p.A298T 0.28 deleterious(0) possibly_damaging(0.839) TCGA-FW-A3R5-06 1 248112357 248112357 C T OR2L8 Silent p.S66S 0.25 TCGA-FW-A3R5-06 1 248129042 248129042 C T OR2AK2 Missense_Mutation p.R137C 0.26 deleterious(0.03) benign(0.117) TCGA-FW-A3R5-06 1 248202185 248202185 C T OR2L2 Missense_Mutation p.L206F 0.10 deleterious(0.03) possibly_damaging(0.658) TCGA-FW-A3R5-06 1 248202490 248202490 C T OR2L2 Silent p.I307I 0.17 TCGA-FW-A3R5-06 1 248224134 248224134 G A OR2L3 Missense_Mutation p.D51N 0.27 deleterious(0.03) benign(0.242) TCGA-FW-A3R5-06 1 248224609 248224609 C T OR2L3 Missense_Mutation p.P209L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 248263316 248263316 C T OR2L13 Silent p.I213I 0.23 TCGA-FW-A3R5-06 1 248308496 248308496 G A OR2M5 Missense_Mutation p.G16E 0.29 deleterious(0) possibly_damaging(0.634) TCGA-FW-A3R5-06 1 248309077 248309077 C T OR2M5 Missense_Mutation p.P210S 0.17 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 1 248343311 248343311 C T OR2M2 Silent p.F8F 0.16 TCGA-FW-A3R5-06 1 248366642 248366642 C T OR2M3 Silent p.S91S 0.27 TCGA-FW-A3R5-06 1 248402395 248402395 C T OR2M4 Silent p.L55L 0.29 TCGA-FW-A3R5-06 1 248402533 248402533 A C OR2M4 Silent p.I101I 0.31 TCGA-FW-A3R5-06 1 248402960 248402960 C T OR2M4 Missense_Mutation p.H244Y 0.21 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 1 248436215 248436215 C T OR2T33 Missense_Mutation p.R301Q 0.32 deleterious(0) benign(0.279) TCGA-FW-A3R5-06 1 248436263 248436263 G A OR2T33 Missense_Mutation p.P285L 0.16 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 1 248436463 248436463 G A OR2T33 Silent p.L218L 0.14 TCGA-FW-A3R5-06 1 248436697 248436697 C T OR2T33 Silent p.L140L 0.15 TCGA-FW-A3R5-06 1 248436749 248436749 G A OR2T33 Missense_Mutation p.A123V 0.15 deleterious(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 1 248437012 248437012 G A OR2T33 Silent p.T35T 0.27 TCGA-FW-A3R5-06 1 248437015 248437015 C T OR2T33 Silent p.L34L 0.20 TCGA-FW-A3R5-06 1 248458484 248458484 G A OR2T12 Missense_Mutation p.L133F 0.20 deleterious(0.05) benign(0.216) TCGA-FW-A3R5-06 1 248486954 248486954 C T OR2M7 Missense_Mutation p.G306E 0.17 tolerated(0.13) benign(0.018) TCGA-FW-A3R5-06 1 248486965 248486965 C T OR2M7 Missense_Mutation p.M302I 0.28 deleterious(0.01) benign(0.001) TCGA-FW-A3R5-06 1 248487739 248487739 G A OR2M7 Silent p.I44I 0.26 TCGA-FW-A3R5-06 1 248487829 248487829 G A OR2M7 Silent p.L14L 0.07 TCGA-FW-A3R5-06 1 248551092 248551092 C T OR2T6 Silent p.F61F 0.15 TCGA-FW-A3R5-06 1 248551788 248551788 G A OR2T6 Silent p.R293R 0.17 TCGA-FW-A3R5-06 1 248570362 248570362 G A OR2T1 Missense_Mutation p.G356E 0.22 tolerated(0.14) benign(0.15) TCGA-FW-A3R5-06 1 248616152 248616152 C T OR2T2 Silent p.L18L 0.17 TCGA-FW-A3R5-06 1 248616180 248616180 C T OR2T2 Missense_Mutation p.L28F 0.11 deleterious(0.05) benign(0.03) TCGA-FW-A3R5-06 1 248616431 248616431 G A OR2T2 Silent p.G111G 0.15 TCGA-FW-A3R5-06 1 248636944 248636944 C T OR2T3 Missense_Mutation p.S98F 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 248637121 248637121 G A OR2T3 Missense_Mutation p.G157E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 248637427 248637427 C T OR2T3 Missense_Mutation p.A259V 0.22 deleterious(0.02) benign(0.259) TCGA-FW-A3R5-06 1 248637430 248637430 C T OR2T3 Missense_Mutation p.S260F 0.21 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 1 248637506 248637506 C T OR2T3 Silent p.I285I 0.17 TCGA-FW-A3R5-06 1 248684977 248684977 G A OR2G6 Silent p.K10K 0.18 TCGA-FW-A3R5-06 1 248685415 248685415 C T OR2G6 Silent p.S156S 0.21 TCGA-FW-A3R5-06 1 248685705 248685705 G A OR2G6 Missense_Mutation p.G253E 0.12 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 248685759 248685759 G A OR2G6 Missense_Mutation p.G271E 0.24 deleterious(0) possibly_damaging(0.787) TCGA-FW-A3R5-06 1 248737532 248737532 G A OR2T34 Missense_Mutation p.S176F 0.33 deleterious(0.03) benign(0.022) TCGA-FW-A3R5-06 1 248737607 248737607 G A OR2T34 Missense_Mutation p.S151L 0.27 tolerated(0.29) benign(0.138) TCGA-FW-A3R5-06 1 248737795 248737795 C T OR2T34 Silent p.V88V 0.18 TCGA-FW-A3R5-06 1 248737872 248737872 G A OR2T34 Missense_Mutation p.P63S 0.22 deleterious(0.01) benign(0.03) TCGA-FW-A3R5-06 1 248737948 248737948 G A OR2T34 Silent p.F37F 0.25 TCGA-FW-A3R5-06 1 248756558 248756558 G A OR2T10 Missense_Mutation p.S171F 0.18 deleterious(0.03) probably_damaging(0.983) TCGA-FW-A3R5-06 1 248756928 248756928 G A OR2T10 Silent p.L48L 0.27 TCGA-FW-A3R5-06 1 248789634 248789634 C T OR2T11 Missense_Mutation p.E266K 0.22 tolerated(0.21) probably_damaging(0.997) TCGA-FW-A3R5-06 1 248790279 248790279 G A OR2T11 Missense_Mutation p.R51C 0.23 deleterious(0.03) possibly_damaging(0.507) TCGA-FW-A3R5-06 1 248801849 248801849 G A OR2T35 Silent p.A237A 0.24 TCGA-FW-A3R5-06 1 248813251 248813251 C T OR2T27 Missense_Mutation p.G312E 0.28 tolerated(0.99) benign(0.001) TCGA-FW-A3R5-06 1 248813326 248813326 G A OR2T27 Missense_Mutation p.P287L 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 248813734 248813734 C T OR2T27 Missense_Mutation p.G151E 0.29 tolerated(0.09) probably_damaging(0.992) TCGA-FW-A3R5-06 1 248814028 248814028 G A OR2T27 Missense_Mutation p.S53F 0.12 tolerated(0.15) benign(0.14) TCGA-FW-A3R5-06 1 248845324 248845324 G A OR14I1 Silent p.G94G 0.16 TCGA-FW-A3R5-06 1 249106434 249106434 G A SH3BP5L Missense_Mutation p.P283S 0.19 tolerated(0.81) benign(0.001) TCGA-FW-A3R5-06 1 249119145 249119145 G A SH3BP5L 5'UTR 0.24 TCGA-FW-A3R5-06 1 24921982 24921982 G A NCMAP Missense_Mutation p.G21R 0.21 tolerated(0.14) possibly_damaging(0.541) TCGA-FW-A3R5-06 1 24989170 24989170 C T SRRM1 Silent p.S501S 0.12 TCGA-FW-A3R5-06 1 24995781 24995781 C T SRRM1 Missense_Mutation p.S636F 0.28 benign(0.184) TCGA-FW-A3R5-06 1 25666982 25666982 C T TMEM50A Missense_Mutation p.S2F 0.09 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 1 25701888 25701888 C T RHCE Missense_Mutation p.E369K 0.21 deleterious(0.03) benign(0.098) TCGA-FW-A3R5-06 1 25701903 25701903 G A RHCE Missense_Mutation p.L364F 0.18 tolerated(0.15) benign(0.132) TCGA-FW-A3R5-06 1 25718530 25718530 C T RHCE Missense_Mutation p.D197N 0.27 tolerated(0.09) possibly_damaging(0.617) TCGA-FW-A3R5-06 1 25735272 25735272 G A RHCE Silent p.F79F 0.29 TCGA-FW-A3R5-06 1 25812187 25812187 C T TMEM57 Missense_Mutation p.A466V 0.18 tolerated(0.2) possibly_damaging(0.626) TCGA-FW-A3R5-06 1 25824819 25824819 C T TMEM57 Silent p.A619A 0.28 TCGA-FW-A3R5-06 1 25891695 25891695 C T LDLRAP1 Missense_Mutation p.S260L 0.30 deleterious(0) benign(0.391) TCGA-FW-A3R5-06 1 26012982 26012982 G A MAN1C1 Missense_Mutation p.E198K 0.29 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 26090428 26090428 C T MAN1C1 Missense_Mutation p.L371F 0.25 deleterious(0) benign(0.066) TCGA-FW-A3R5-06 1 26104708 26104708 G A MAN1C1 Missense_Mutation p.G457D 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 26138213 26138213 C T SEPN1 Missense_Mutation p.P375L 0.38 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 1 26189653 26189653 G A PAQR7 Silent p.F226F 0.30 TCGA-FW-A3R5-06 1 26227483 26227483 G A STMN1 Intron 0.28 TCGA-FW-A3R5-06 1 26311004 26311004 G A PAFAH2 Silent p.A119A 0.22 TCGA-FW-A3R5-06 1 26365705 26365705 C T SLC30A2 Silent p.E355E 0.10 TCGA-FW-A3R5-06 1 26378340 26378340 G A TRIM63 3'UTR 0.42 TCGA-FW-A3R5-06 1 26393830 26393830 G A TRIM63 Silent p.F52F 0.29 TCGA-FW-A3R5-06 1 26440953 26440953 C T PDIK1L Missense_Mutation p.R52C 0.24 deleterious(0.04) probably_damaging(0.93) TCGA-FW-A3R5-06 1 26514727 26514727 G A CNKSR1 Nonsense_Mutation p.W486* 0.42 TCGA-FW-A3R5-06 1 26517322 26517322 G A CATSPER4 Silent p.T68T 0.60 TCGA-FW-A3R5-06 1 26517895 26517895 C T CATSPER4 Missense_Mutation p.L111F 0.30 tolerated(0.21) possibly_damaging(0.793) TCGA-FW-A3R5-06 1 26524815 26524815 C T CATSPER4 Silent p.F239F 0.29 TCGA-FW-A3R5-06 1 26527408 26527408 G A CATSPER4 Missense_Mutation p.E359K 0.21 tolerated(0.09) possibly_damaging(0.781) TCGA-FW-A3R5-06 1 26581740 26581740 C T CEP85 Missense_Mutation p.P96L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 26607282 26607282 C T SH3BGRL3 Silent p.T25T 0.14 TCGA-FW-A3R5-06 1 26627455 26627455 G A UBXN11 Missense_Mutation p.S54F 0.32 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 1 26664512 26664512 C T AIM1L Silent p.G292G 0.38 TCGA-FW-A3R5-06 1 26669242 26669242 C T AIM1L Intron 0.25 TCGA-FW-A3R5-06 1 26689562 26689562 C T ZNF683 Silent p.Q366Q 0.27 TCGA-FW-A3R5-06 1 26689615 26689615 G A ZNF683 Missense_Mutation p.P349S 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 26691277 26691277 G A ZNF683 Missense_Mutation p.L254F 0.44 tolerated(0.11) possibly_damaging(0.687) TCGA-FW-A3R5-06 1 26872494 26872494 C T RPS6KA1 Missense_Mutation p.P35S 0.11 tolerated(0.23) benign(0) TCGA-FW-A3R5-06 1 26877949 26877949 C T RPS6KA1 Silent p.F132F 0.27 TCGA-FW-A3R5-06 1 27087520 27087520 C T ARID1A Silent p.S698S 0.30 TCGA-FW-A3R5-06 1 27124182 27124182 C T PIGV Silent p.S443S 0.15 TCGA-FW-A3R5-06 1 27190435 27190435 G A SFN Silent p.Q244Q 0.36 TCGA-FW-A3R5-06 1 27238279 27238279 G A NR0B2 3'UTR 0.29 TCGA-FW-A3R5-06 1 27238395 27238395 G A NR0B2 Missense_Mutation p.P239S 0.19 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 1 27238410 27238410 C T NR0B2 Missense_Mutation p.D234N 0.20 deleterious(0.03) benign(0.183) TCGA-FW-A3R5-06 1 27272737 27272737 C T NUDC 3'UTR 0.31 TCGA-FW-A3R5-06 1 27276508 27276508 C T C1orf172 3'UTR 0.14 TCGA-FW-A3R5-06 1 27436206 27436206 G A SLC9A1 Silent p.F292F 0.26 TCGA-FW-A3R5-06 1 27683082 27683082 G A MAP3K6 Missense_Mutation p.R1175W 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 27684701 27684701 G A MAP3K6 Silent p.C962C 0.28 TCGA-FW-A3R5-06 1 27685247 27685247 G A MAP3K6 Missense_Mutation p.R846C 0.34 deleterious(0) possibly_damaging(0.846) TCGA-FW-A3R5-06 1 27690811 27690811 G A MAP3K6 Silent p.G193G 0.26 TCGA-FW-A3R5-06 1 27697464 27697464 C T FCN3 Splice_Site p.X132_splice 0.13 TCGA-FW-A3R5-06 1 27700886 27700886 G A FCN3 Missense_Mutation p.P50S 0.19 deleterious(0) possibly_damaging(0.879) TCGA-FW-A3R5-06 1 27736193 27736193 G A WASF2 Silent p.I444I 0.21 TCGA-FW-A3R5-06 1 27744833 27744833 G A WASF2 Missense_Mutation p.P119L 0.26 deleterious(0) unknown(0) TCGA-FW-A3R5-06 1 27877351 27877351 G A AHDC1 Silent p.L426L 0.25 TCGA-FW-A3R5-06 1 27939826 27939826 C T FGR Missense_Mutation p.A429T 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 27941044 27941044 G A FGR Silent p.D382D 0.26 TCGA-FW-A3R5-06 1 27943722 27943722 C T FGR Missense_Mutation p.E172K 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 1 27948152 27948152 C T FGR Missense_Mutation p.E116K 0.26 tolerated(0.39) possibly_damaging(0.612) TCGA-FW-A3R5-06 1 27949610 27949610 C T FGR Missense_Mutation p.R91Q 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 1 27949645 27949645 C T FGR Silent p.V79V 0.29 TCGA-FW-A3R5-06 1 28081763 28081763 C T FAM76A Silent p.A253A 0.31 TCGA-FW-A3R5-06 1 28212578 28212578 G A THEMIS2 3'UTR 0.40 TCGA-FW-A3R5-06 1 28282549 28282549 G A SMPDL3B Missense_Mutation p.A321T 0.19 deleterious(0) benign(0.197) TCGA-FW-A3R5-06 1 28285047 28285047 G A SMPDL3B Missense_Mutation p.E356K 0.09 tolerated(0.54) benign(0.005) TCGA-FW-A3R5-06 1 28290032 28290032 G A XKR8 Silent p.G106G 0.24 TCGA-FW-A3R5-06 1 28477113 28477113 G A PTAFR Silent p.V140V 0.25 TCGA-FW-A3R5-06 1 28598868 28598868 C T SESN2 Missense_Mutation p.P143L 0.13 deleterious(0.04) benign(0.009) TCGA-FW-A3R5-06 1 28607230 28607230 C T SESN2 Missense_Mutation p.H454Y 0.16 deleterious(0) possibly_damaging(0.807) TCGA-FW-A3R5-06 1 28861653 28861653 C T RCC1 Missense_Mutation p.A209V 0.19 tolerated(0.11) benign(0.26) TCGA-FW-A3R5-06 1 28861654 28861654 C T RCC1 Silent p.A209A 0.20 TCGA-FW-A3R5-06 1 28864346 28864346 C T RCC1 Missense_Mutation p.R396C 0.42 tolerated(0.12) benign(0.02) TCGA-FW-A3R5-06 1 29070059 29070059 C T YTHDF2 Missense_Mutation p.S426F 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 29189342 29189342 C T OPRD1 Silent p.F222F 0.37 TCGA-FW-A3R5-06 1 2938364 2938364 C T ACTRT2 Silent p.I38I 0.28 TCGA-FW-A3R5-06 1 2938588 2938588 C T ACTRT2 Missense_Mutation p.S113F 0.34 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 1 2938959 2938959 G A ACTRT2 Missense_Mutation p.E237K 0.22 tolerated(0.21) benign(0.033) TCGA-FW-A3R5-06 1 2939141 2939141 G A ACTRT2 Silent p.G297G 0.28 TCGA-FW-A3R5-06 1 2939396 2939396 C T ACTRT2 3'UTR 0.21 TCGA-FW-A3R5-06 1 29587275 29587275 A T PTPRU Missense_Mutation p.H335L 0.34 deleterious(0.01) benign(0.168) TCGA-FW-A3R5-06 1 29642576 29642576 C T PTPRU Silent p.I1152I 0.22 TCGA-FW-A3R5-06 1 29642577 29642577 C T PTPRU Missense_Mutation p.P1153S 0.23 deleterious(0.04) possibly_damaging(0.724) TCGA-FW-A3R5-06 1 29651802 29651802 C T PTPRU Silent p.T1414T 0.26 TCGA-FW-A3R5-06 1 3102809 3102809 C T PRDM16 Missense_Mutation p.P53L 0.11 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-FW-A3R5-06 1 3102863 3102863 C T PRDM16 Missense_Mutation p.P71L 0.10 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-FW-A3R5-06 1 31206707 31206707 C T LAPTM5 Missense_Mutation p.G253S 0.24 tolerated_low_confidence(0.24) benign(0.055) TCGA-FW-A3R5-06 1 31441270 31441270 G A PUM1 Missense_Mutation p.P526S 0.25 tolerated(0.72) benign(0.002) TCGA-FW-A3R5-06 1 31656841 31656841 G A NKAIN1 Silent p.T98T 0.35 TCGA-FW-A3R5-06 1 31840289 31840289 C T FABP3 Missense_Mutation p.G100E 0.29 deleterious(0.02) benign(0.415) TCGA-FW-A3R5-06 1 31896549 31896549 C T SERINC2 Missense_Mutation p.L26F 0.10 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 32042974 32042974 C T TINAGL1 Silent p.L75L 0.18 TCGA-FW-A3R5-06 1 32101117 32101117 G A PEF1 Missense_Mutation p.P11S 0.28 tolerated(0.21) unknown(0) TCGA-FW-A3R5-06 1 32126220 32126220 C T COL16A1 Missense_Mutation p.G1282E 0.23 unknown(0) TCGA-FW-A3R5-06 1 32145279 32145279 G A COL16A1 Missense_Mutation p.P909L 0.24 unknown(0) TCGA-FW-A3R5-06 1 32151349 32151349 G A COL16A1 Missense_Mutation p.P636L 0.20 unknown(0) TCGA-FW-A3R5-06 1 32158230 32158230 G A COL16A1 Missense_Mutation p.P376L 0.20 unknown(0) TCGA-FW-A3R5-06 1 32198639 32198639 G A BAI2 Silent p.L1186L 0.45 TCGA-FW-A3R5-06 1 32256892 32256892 C T SPOCD1 Missense_Mutation p.G988D 0.21 deleterious(0.03) possibly_damaging(0.723) TCGA-FW-A3R5-06 1 32259377 32259377 C T SPOCD1 Silent p.R835R 0.39 TCGA-FW-A3R5-06 1 32259443 32259443 C T SPOCD1 Silent p.G813G 0.22 TCGA-FW-A3R5-06 1 32280440 32280440 C T SPOCD1 Silent p.R165R 0.37 TCGA-FW-A3R5-06 1 32503507 32503507 G T KHDRBS1 Missense_Mutation p.G326V 0.31 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 1 32622504 32622504 C T KPNA6 Silent p.F63F 0.28 TCGA-FW-A3R5-06 1 32635512 32635512 C T KPNA6 Missense_Mutation p.P425L 0.25 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 1 32645943 32645943 C T TXLNA 5'UTR 0.29 TCGA-FW-A3R5-06 1 32740570 32740570 C T LCK Intron 0.25 TCGA-FW-A3R5-06 1 32742026 32742026 T G LCK Silent p.V240V 0.22 TCGA-FW-A3R5-06 1 32745514 32745514 G A LCK Missense_Mutation p.V372M 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 1 32751184 32751184 C T LCK Missense_Mutation p.P466L 0.16 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 1 32751281 32751281 C T LCK Silent p.F498F 0.29 TCGA-FW-A3R5-06 1 3313082 3313082 G A PRDM16 Missense_Mutation p.E201K 0.29 tolerated(0.11) possibly_damaging(0.489) TCGA-FW-A3R5-06 1 3321352 3321352 G A PRDM16 Missense_Mutation p.D312N 0.35 deleterious(0.04) benign(0.345) TCGA-FW-A3R5-06 1 3322099 3322099 C T PRDM16 Missense_Mutation p.S358L 0.24 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 1 33234287 33234287 C T KIAA1522 Missense_Mutation p.S166F 0.20 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 1 33235498 33235498 G A KIAA1522 Missense_Mutation p.E240K 0.24 tolerated(0.24) unknown(0) TCGA-FW-A3R5-06 1 33236535 33236535 G A KIAA1522 Silent p.S585S 0.37 TCGA-FW-A3R5-06 1 3328402 3328402 C T PRDM16 Silent p.L547L 0.29 TCGA-FW-A3R5-06 1 3329121 3329121 C T PRDM16 Missense_Mutation p.P787L 0.09 tolerated(0.14) benign(0.005) TCGA-FW-A3R5-06 1 3329159 3329159 G A PRDM16 Missense_Mutation p.E800K 0.21 deleterious(0) benign(0.371) TCGA-FW-A3R5-06 1 33333418 33333418 C T FNDC5 Silent p.G70G 0.21 TCGA-FW-A3R5-06 1 3334455 3334455 G A PRDM16 Missense_Mutation p.G919S 0.24 tolerated(0.32) benign(0.008) TCGA-FW-A3R5-06 1 3334456 3334456 G A PRDM16 Missense_Mutation p.G919D 0.24 deleterious(0.04) benign(0.14) TCGA-FW-A3R5-06 1 33359166 33359166 G A HPCA Silent p.E140E 0.14 TCGA-FW-A3R5-06 1 3342181 3342181 G A PRDM16 Silent p.S992S 0.32 TCGA-FW-A3R5-06 1 3342631 3342631 G A PRDM16 Silent p.G1042G 0.33 TCGA-FW-A3R5-06 1 33478956 33478956 G A AK2 Silent p.A182A 0.35 TCGA-FW-A3R5-06 1 33797043 33797043 G A PHC2 Missense_Mutation p.P637S 0.32 tolerated(0.11) benign(0.186) TCGA-FW-A3R5-06 1 3386026 3386026 C T ARHGEF16 Silent p.F297F 0.22 TCGA-FW-A3R5-06 1 3391322 3391322 C T ARHGEF16 Silent p.S452S 0.15 TCGA-FW-A3R5-06 1 3395114 3395114 G A ARHGEF16 Silent p.Q584Q 0.34 TCGA-FW-A3R5-06 1 33985438 33985438 G A CSMD2 Silent p.G3426G 0.22 TCGA-FW-A3R5-06 1 33998705 33998705 C T CSMD2 Silent p.E3228E 0.40 TCGA-FW-A3R5-06 1 33998741 33998741 G A CSMD2 Silent p.S3216S 0.32 TCGA-FW-A3R5-06 1 34002668 34002668 G A CSMD2 Missense_Mutation p.P3134L 0.37 deleterious(0.01) probably_damaging(0.919) TCGA-FW-A3R5-06 1 34003130 34003130 G A CSMD2 Silent p.S3093S 0.26 TCGA-FW-A3R5-06 1 34006240 34006240 G A CSMD2 Silent p.F3028F 0.27 TCGA-FW-A3R5-06 1 34038291 34038291 G A CSMD2 Missense_Mutation p.A2528V 0.18 tolerated(0.13) benign(0.226) TCGA-FW-A3R5-06 1 34052145 34052145 C T CSMD2 Missense_Mutation p.G2339E 0.21 deleterious(0.03) benign(0.03) TCGA-FW-A3R5-06 1 34087766 34087766 C T CSMD2 Splice_Site p.X1903_splice 0.32 TCGA-FW-A3R5-06 1 34090712 34090712 G A CSMD2 Silent p.I1773I 0.31 TCGA-FW-A3R5-06 1 34100921 34100921 C T CSMD2 Missense_Mutation p.G1620E 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 34102044 34102044 C T CSMD2 Missense_Mutation p.E1589K 0.30 tolerated(0.98) benign(0.007) TCGA-FW-A3R5-06 1 34123547 34123547 G A CSMD2 Silent p.I1442I 0.23 TCGA-FW-A3R5-06 1 34158556 34158556 G A CSMD2 Silent p.I1302I 0.09 TCGA-FW-A3R5-06 1 34164423 34164423 C T CSMD2 Silent p.R1245R 0.08 TCGA-FW-A3R5-06 1 34166234 34166234 C T CSMD2 Missense_Mutation p.V1166I 0.31 tolerated(0.17) benign(0.014) TCGA-FW-A3R5-06 1 34174758 34174758 C T CSMD2 Silent p.Q1129Q 0.27 TCGA-FW-A3R5-06 1 34174801 34174801 G A CSMD2 Missense_Mutation p.P1115L 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 3417829 3417829 G A MEGF6 Silent p.C786C 0.38 TCGA-FW-A3R5-06 1 34181935 34181935 G A CSMD2 Silent p.F1016F 0.11 TCGA-FW-A3R5-06 1 34182085 34182085 G A CSMD2 Silent p.F966F 0.32 TCGA-FW-A3R5-06 1 3422738 3422738 G A MEGF6 Missense_Mutation p.R618W 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 1 3424448 3424448 G A MEGF6 Missense_Mutation p.S567F 0.29 tolerated(0.06) possibly_damaging(0.702) TCGA-FW-A3R5-06 1 3428168 3428168 G A MEGF6 Silent p.L354L 0.25 TCGA-FW-A3R5-06 1 34312544 34312544 C T CSMD2 Missense_Mutation p.R285Q 0.29 deleterious(0.03) probably_damaging(0.992) TCGA-FW-A3R5-06 1 34329958 34329958 G A HMGB4 Missense_Mutation p.E56K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 1 34330366 34330366 G A HMGB4 3'UTR 0.21 TCGA-FW-A3R5-06 1 3440797 3440797 G A MEGF6 Silent p.C165C 0.29 TCGA-FW-A3R5-06 1 34554765 34554765 G A CSMD2 Missense_Mutation p.P33S 0.28 tolerated(0.15) probably_damaging(0.995) TCGA-FW-A3R5-06 1 34663181 34663181 G A C1orf94 Missense_Mutation p.G226S 0.26 tolerated(0.2) benign(0.015) TCGA-FW-A3R5-06 1 34663440 34663440 G A C1orf94 Missense_Mutation p.R312K 0.26 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 1 34663471 34663471 C T C1orf94 Silent p.S322S 0.30 TCGA-FW-A3R5-06 1 34666412 34666412 G A C1orf94 Missense_Mutation p.G350E 0.31 tolerated(1) benign(0) TCGA-FW-A3R5-06 1 34684295 34684295 C T C1orf94 Missense_Mutation p.S577L 0.21 deleterious(0) possibly_damaging(0.814) TCGA-FW-A3R5-06 1 34684425 34684425 G A C1orf94 3'UTR 0.30 TCGA-FW-A3R5-06 1 3511920 3511920 C T MEGF6 Missense_Mutation p.E120K 0.25 deleterious(0.04) benign(0.007) TCGA-FW-A3R5-06 1 3511995 3511995 C T MEGF6 Missense_Mutation p.G95S 0.09 tolerated(0.42) benign(0.019) TCGA-FW-A3R5-06 1 35223201 35223201 C T GJB5 Silent p.L90L 0.18 TCGA-FW-A3R5-06 1 35223226 35223226 G A GJB5 Missense_Mutation p.E99K 0.25 tolerated(0.16) benign(0.042) TCGA-FW-A3R5-06 1 35227159 35227159 G A GJB4 Missense_Mutation p.E102K 0.38 tolerated(0.08) benign(0.219) TCGA-FW-A3R5-06 1 35227279 35227279 G A GJB4 Missense_Mutation p.D142N 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 35251217 35251217 G A GJB3 3'UTR 0.32 TCGA-FW-A3R5-06 1 35251247 35251247 G A GJB3 3'UTR 0.50 TCGA-FW-A3R5-06 1 35332721 35332721 G A DLGAP3 Silent p.I883I 0.30 TCGA-FW-A3R5-06 1 35370539 35370539 C T DLGAP3 Missense_Mutation p.G149E 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-FW-A3R5-06 1 35370810 35370810 G A DLGAP3 Missense_Mutation p.P59S 0.33 tolerated(0.26) benign(0.004) TCGA-FW-A3R5-06 1 35453185 35453185 G A ZMYM6 Silent p.F1166F 0.31 TCGA-FW-A3R5-06 1 35579437 35579437 C T ZMYM1 Missense_Mutation p.S669L 0.29 tolerated(0.12) benign(0.003) TCGA-FW-A3R5-06 1 35652632 35652632 G A SFPQ Silent p.T652T 0.36 TCGA-FW-A3R5-06 1 35824855 35824855 C T ZMYM4 Missense_Mutation p.P139S 0.22 tolerated_low_confidence(0.63) benign(0.016) TCGA-FW-A3R5-06 1 35928300 35928300 G A KIAA0319L Missense_Mutation p.R406W 0.25 deleterious(0.01) possibly_damaging(0.766) TCGA-FW-A3R5-06 1 36023680 36023680 C T NCDN 5'UTR 0.18 TCGA-FW-A3R5-06 1 36181917 36181917 G A C1orf216 Silent p.F2F 0.32 TCGA-FW-A3R5-06 1 36202572 36202572 G A CLSPN Silent p.V1284V 0.34 TCGA-FW-A3R5-06 1 36226473 36226473 G A CLSPN Missense_Mutation p.T350I 0.21 tolerated(0.06) possibly_damaging(0.628) TCGA-FW-A3R5-06 1 36358229 36358229 G A AGO1 Missense_Mutation p.G94E 0.34 deleterious(0) possibly_damaging(0.732) TCGA-FW-A3R5-06 1 36381037 36381037 C T AGO1 Missense_Mutation p.S641F 0.23 deleterious(0) possibly_damaging(0.811) TCGA-FW-A3R5-06 1 36385272 36385272 C T AGO1 3'UTR 0.33 TCGA-FW-A3R5-06 1 36385273 36385273 C T AGO1 3'UTR 0.27 TCGA-FW-A3R5-06 1 3638665 3638665 C T TP73 Silent p.P170P 0.23 TCGA-FW-A3R5-06 1 3638758 3638758 G A TP73 Silent p.R201R 0.28 TCGA-FW-A3R5-06 1 36563655 36563655 C T COL8A2 Missense_Mutation p.G543S 0.26 tolerated(0.15) probably_damaging(0.996) TCGA-FW-A3R5-06 1 36564767 36564767 G A COL8A2 Missense_Mutation p.P172L 0.50 tolerated(0.6) unknown(0) TCGA-FW-A3R5-06 1 36602741 36602741 G A TRAPPC3 3'UTR 0.41 TCGA-FW-A3R5-06 1 36605347 36605347 G A TRAPPC3 Missense_Mutation p.R72W 0.30 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 3672097 3672097 C T CCDC27 Silent p.F173F 0.30 TCGA-FW-A3R5-06 1 3673354 3673354 G A CCDC27 Missense_Mutation p.R204K 0.22 deleterious(0.02) benign(0) TCGA-FW-A3R5-06 1 36751979 36751979 C T THRAP3 Missense_Mutation p.R50C 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 1 36752667 36752667 G A THRAP3 Missense_Mutation p.S279N 0.30 tolerated(0.69) benign(0.001) TCGA-FW-A3R5-06 1 36755299 36755299 C T THRAP3 Missense_Mutation p.S560F 0.22 tolerated(0.09) probably_damaging(0.952) TCGA-FW-A3R5-06 1 3679786 3679786 G A CCDC27 Missense_Mutation p.G357R 0.50 tolerated(0.12) benign(0.442) TCGA-FW-A3R5-06 1 3679789 3679789 G A CCDC27 Missense_Mutation p.G358S 0.50 tolerated(0.96) benign(0.06) TCGA-FW-A3R5-06 1 36823848 36823848 G A STK40 Missense_Mutation p.L112F 0.45 tolerated(0.36) benign(0.324) TCGA-FW-A3R5-06 1 3683150 3683150 G A CCDC27 Missense_Mutation p.E502K 0.08 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 1 36931934 36931934 C T CSF3R 3'UTR 0.36 TCGA-FW-A3R5-06 1 36933246 36933246 G A CSF3R Missense_Mutation p.S624L 0.20 tolerated(0.54) benign(0.008) TCGA-FW-A3R5-06 1 36933525 36933525 G A CSF3R Missense_Mutation p.H588Y 0.09 deleterious(0.03) possibly_damaging(0.689) TCGA-FW-A3R5-06 1 36933542 36933542 G A CSF3R Missense_Mutation p.S582F 0.16 tolerated(0.13) benign(0.011) TCGA-FW-A3R5-06 1 36939451 36939451 C T CSF3R Missense_Mutation p.M133I 0.27 deleterious(0.02) possibly_damaging(0.547) TCGA-FW-A3R5-06 1 36945041 36945041 G A CSF3R Silent p.L19L 0.30 TCGA-FW-A3R5-06 1 3703511 3703511 G A LRRC47 Missense_Mutation p.P327S 0.25 deleterious(0.01) benign(0.023) TCGA-FW-A3R5-06 1 37267408 37267408 C T GRIK3 3'UTR 0.28 TCGA-FW-A3R5-06 1 37271804 37271804 C T GRIK3 Missense_Mutation p.E739K 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 37271906 37271906 C T GRIK3 Missense_Mutation p.E705K 0.21 tolerated(0.38) benign(0.128) TCGA-FW-A3R5-06 1 37282783 37282783 G A GRIK3 Silent p.L657L 0.37 TCGA-FW-A3R5-06 1 37324718 37324718 G A GRIK3 Silent p.F365F 0.15 TCGA-FW-A3R5-06 1 37325573 37325573 T G GRIK3 Missense_Mutation p.N278H 0.24 deleterious(0) benign(0.304) TCGA-FW-A3R5-06 1 37325588 37325588 G A GRIK3 Missense_Mutation p.R273C 0.18 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 1 37346323 37346323 G A GRIK3 Silent p.P154P 0.28 TCGA-FW-A3R5-06 1 37346438 37346438 G A GRIK3 Missense_Mutation p.S116F 0.38 tolerated(0.43) possibly_damaging(0.898) TCGA-FW-A3R5-06 1 3746449 3746449 G A CEP104 Missense_Mutation p.P650L 0.11 tolerated(0.06) benign(0.238) TCGA-FW-A3R5-06 1 3753941 3753941 G A CEP104 Missense_Mutation p.P345L 0.31 deleterious(0.04) benign(0.02) TCGA-FW-A3R5-06 1 38027255 38027255 G A DNALI1 Silent p.Q187Q 0.33 TCGA-FW-A3R5-06 1 38034744 38034744 G A GNL2 Missense_Mutation p.L526F 0.31 tolerated(0.08) benign(0.008) TCGA-FW-A3R5-06 1 38078497 38078497 C T RSPO1 Missense_Mutation p.R241K 0.25 tolerated(0.54) benign(0.006) TCGA-FW-A3R5-06 1 38155359 38155359 G A C1orf109 Missense_Mutation p.A65V 0.34 tolerated(0.27) benign(0.134) TCGA-FW-A3R5-06 1 38173996 38173996 C T CDCA8 Silent p.N267N 0.28 TCGA-FW-A3R5-06 1 38181735 38181735 C T EPHA10 3'UTR 0.40 TCGA-FW-A3R5-06 1 38185201 38185201 C T EPHA10 Missense_Mutation p.D881N 0.15 deleterious(0.02) benign(0.288) TCGA-FW-A3R5-06 1 38186485 38186485 C T EPHA10 Missense_Mutation p.M726I 0.35 deleterious(0) benign(0.383) TCGA-FW-A3R5-06 1 38192815 38192815 G A EPHA10 Silent p.L577L 0.37 TCGA-FW-A3R5-06 1 38227004 38227004 C T EPHA10 Intron 0.31 TCGA-FW-A3R5-06 1 38227191 38227191 C T EPHA10 Missense_Mutation p.G246R 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-FW-A3R5-06 1 38227465 38227465 C T EPHA10 Silent p.T154T 0.43 TCGA-FW-A3R5-06 1 38330034 38330034 C T INPP5B Missense_Mutation p.R859Q 0.10 tolerated(0.5) benign(0.004) TCGA-FW-A3R5-06 1 38355359 38355359 G A INPP5B Missense_Mutation p.R223C 0.24 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 1 38423798 38423798 G A SF3A3 3'UTR 0.29 TCGA-FW-A3R5-06 1 38435103 38435103 G A SF3A3 Silent p.L402L 0.09 TCGA-FW-A3R5-06 1 38484756 38484756 T A UTP11L Missense_Mutation p.L123H 0.21 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 1 39341152 39341152 C T GJA9 Missense_Mutation p.E207K 0.33 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 1 39381281 39381281 C A RHBDL2 Missense_Mutation p.K116N 0.20 deleterious(0.03) benign(0.142) TCGA-FW-A3R5-06 1 39500284 39500284 C T NDUFS5 3'UTR 0.29 TCGA-FW-A3R5-06 1 39549848 39549848 C T MACF1 5'UTR 0.27 TCGA-FW-A3R5-06 1 39549961 39549961 G A MACF1 Missense_Mutation p.R24Q 0.28 benign(0.008) TCGA-FW-A3R5-06 1 39782184 39782184 C T MACF1 Missense_Mutation p.H1196Y 0.26 possibly_damaging(0.794) TCGA-FW-A3R5-06 1 39788323 39788323 C T MACF1 Missense_Mutation p.S1363L 0.29 probably_damaging(0.988) TCGA-FW-A3R5-06 1 39893908 39893908 C T MACF1 Silent p.F3522F 0.27 TCGA-FW-A3R5-06 1 39903468 39903468 C T MACF1 Missense_Mutation p.P3944L 0.24 probably_damaging(1) TCGA-FW-A3R5-06 1 39934344 39934344 C T MACF1 Missense_Mutation p.R5212C 0.30 probably_damaging(0.91) TCGA-FW-A3R5-06 1 40027429 40027429 G A PABPC4 Missense_Mutation p.H642Y 0.24 deleterious(0.05) unknown(0) TCGA-FW-A3R5-06 1 40030130 40030130 G A PABPC4 Missense_Mutation p.A473V 0.29 tolerated(0.38) benign(0.001) TCGA-FW-A3R5-06 1 40030920 40030920 G A PABPC4 Missense_Mutation p.A368V 0.10 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 40035355 40035355 G A PABPC4 Missense_Mutation p.T217I 0.08 tolerated(1) benign(0.081) TCGA-FW-A3R5-06 1 40092724 40092724 G A HEYL Missense_Mutation p.R148C 0.26 deleterious(0.02) benign(0.411) TCGA-FW-A3R5-06 1 40105220 40105220 C T HEYL Silent p.L26L 0.26 TCGA-FW-A3R5-06 1 40149780 40149780 G A HPCAL4 Silent p.F69F 0.31 TCGA-FW-A3R5-06 1 40219063 40219063 C T PPIE Intron 0.33 TCGA-FW-A3R5-06 1 40236066 40236066 C T OXCT2 Missense_Mutation p.E288K 0.11 tolerated(0.63) benign(0.002) TCGA-FW-A3R5-06 1 40363568 40363568 C T MYCL Missense_Mutation p.V221M 0.20 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 40424494 40424494 C T MFSD2A Missense_Mutation p.P130L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 40555169 40555169 G A PPT1 Missense_Mutation p.P150L 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 40555170 40555170 G A PPT1 Missense_Mutation p.P150S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 40702463 40702463 C T RLF Nonsense_Mutation p.Q697* 0.24 TCGA-FW-A3R5-06 1 40713644 40713644 C T TMCO2 5'UTR 0.25 TCGA-FW-A3R5-06 1 40768415 40768415 G A COL9A2 Missense_Mutation p.P557L 0.31 tolerated(0.08) benign(0.241) TCGA-FW-A3R5-06 1 40773171 40773171 C T COL9A2 Missense_Mutation p.G319S 0.28 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 1 40773888 40773888 C T COL9A2 Silent p.G292G 0.31 TCGA-FW-A3R5-06 1 40922631 40922631 C T ZFP69B Silent p.F76F 0.33 TCGA-FW-A3R5-06 1 40980428 40980428 C T EXO5 Missense_Mutation p.S71L 0.21 deleterious(0) benign(0.418) TCGA-FW-A3R5-06 1 41101655 41101655 G A RIMS3 Missense_Mutation p.R98W 0.29 tolerated_low_confidence(0.32) benign(0.018) TCGA-FW-A3R5-06 1 41236542 41236542 T A NFYC 3'UTR 0.32 TCGA-FW-A3R5-06 1 41298734 41298734 T G KCNQ4 Missense_Mutation p.L521R 0.17 deleterious(0.03) probably_damaging(0.953) TCGA-FW-A3R5-06 1 41303402 41303402 C T KCNQ4 Missense_Mutation p.P604L 0.25 tolerated(0.15) benign(0.438) TCGA-FW-A3R5-06 1 41945032 41945032 C T EDN2 3'UTR 0.19 TCGA-FW-A3R5-06 1 41945046 41945046 G A EDN2 3'UTR 0.23 TCGA-FW-A3R5-06 1 41976634 41976634 C T HIVEP3 Missense_Mutation p.E2237K 0.19 probably_damaging(0.989) TCGA-FW-A3R5-06 1 41979410 41979410 C T HIVEP3 Missense_Mutation p.D1828N 0.20 possibly_damaging(0.526) TCGA-FW-A3R5-06 1 42045550 42045550 G A HIVEP3 Missense_Mutation p.P1640L 0.37 probably_damaging(0.999) TCGA-FW-A3R5-06 1 42045551 42045551 G A HIVEP3 Missense_Mutation p.P1640S 0.36 probably_damaging(0.998) TCGA-FW-A3R5-06 1 42046640 42046640 G A HIVEP3 Missense_Mutation p.P1277S 0.09 benign(0.004) TCGA-FW-A3R5-06 1 42046641 42046641 G A HIVEP3 Silent p.S1276S 0.09 TCGA-FW-A3R5-06 1 42046936 42046936 A T HIVEP3 Missense_Mutation p.M1178K 0.22 benign(0.179) TCGA-FW-A3R5-06 1 42047037 42047037 G A HIVEP3 Silent p.S1144S 0.32 TCGA-FW-A3R5-06 1 42047038 42047038 G A HIVEP3 Missense_Mutation p.S1144F 0.30 probably_damaging(0.935) TCGA-FW-A3R5-06 1 42047558 42047558 G A HIVEP3 Silent p.L971L 0.14 TCGA-FW-A3R5-06 1 42048690 42048690 G A HIVEP3 Silent p.I593I 0.24 TCGA-FW-A3R5-06 1 42049251 42049251 G A HIVEP3 Silent p.P406P 0.14 TCGA-FW-A3R5-06 1 42050067 42050067 C T HIVEP3 Silent p.V134V 0.32 TCGA-FW-A3R5-06 1 42050073 42050073 G A HIVEP3 Silent p.S132S 0.31 TCGA-FW-A3R5-06 1 42050262 42050262 G A HIVEP3 Silent p.G69G 0.29 TCGA-FW-A3R5-06 1 42628462 42628462 C T GUCA2A 3'UTR 0.35 TCGA-FW-A3R5-06 1 42875687 42875687 C T RIMKLA Missense_Mutation p.H172Y 0.23 tolerated(0.93) benign(0.049) TCGA-FW-A3R5-06 1 42880783 42880783 G A RIMKLA 3'UTR 0.45 TCGA-FW-A3R5-06 1 42896291 42896291 G A ZMYND12 3'UTR 0.36 TCGA-FW-A3R5-06 1 42901011 42901011 G A ZMYND12 Missense_Mutation p.L255F 0.26 tolerated(0.41) benign(0.03) TCGA-FW-A3R5-06 1 42914141 42914141 G A ZMYND12 Missense_Mutation p.L141F 0.21 deleterious(0.02) possibly_damaging(0.721) TCGA-FW-A3R5-06 1 42925347 42925347 C T PPCS Missense_Mutation p.S229F 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 42925368 42925368 C T PPCS Missense_Mutation p.P236L 0.20 tolerated(0.09) possibly_damaging(0.555) TCGA-FW-A3R5-06 1 43203960 43203960 G A CLDN19 Missense_Mutation p.S138L 0.18 deleterious(0.01) possibly_damaging(0.753) TCGA-FW-A3R5-06 1 43296011 43296011 C T ERMAP Intron 0.27 TCGA-FW-A3R5-06 1 43394917 43394917 G A SLC2A1 Silent p.G312G 0.18 TCGA-FW-A3R5-06 1 43738463 43738463 G A TMEM125 Missense_Mutation p.E24K 0.47 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 43773519 43773519 G A TIE1 Silent p.Q322Q 0.26 TCGA-FW-A3R5-06 1 43774687 43774687 C T TIE1 Missense_Mutation p.S358L 0.17 tolerated(0.07) benign(0.006) TCGA-FW-A3R5-06 1 43778170 43778170 G A TIE1 Missense_Mutation p.G609R 0.23 tolerated(0.08) probably_damaging(0.991) TCGA-FW-A3R5-06 1 43803534 43803534 C T MPL Silent p.A5A 0.27 TCGA-FW-A3R5-06 1 43869432 43869432 C T SZT2 Missense_Mutation p.S105F 0.26 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 1 43897964 43897964 C T SZT2 Missense_Mutation p.P1709S 0.27 tolerated(1) possibly_damaging(0.839) TCGA-FW-A3R5-06 1 43898243 43898243 C T SZT2 Missense_Mutation p.P1776L 0.31 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 1 43909390 43909390 C T SZT2 Silent p.F2859F 0.27 TCGA-FW-A3R5-06 1 44019227 44019227 C T PTPRF Silent p.F52F 0.28 TCGA-FW-A3R5-06 1 44044528 44044528 G A PTPRF Missense_Mutation p.E206K 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 44054630 44054630 C T PTPRF Missense_Mutation p.S303L 0.26 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 1 44064258 44064258 G A PTPRF Intron 0.27 TCGA-FW-A3R5-06 1 44069433 44069433 C T PTPRF Silent p.F870F 0.22 TCGA-FW-A3R5-06 1 44083474 44083474 C T PTPRF Silent p.I1421I 0.22 TCGA-FW-A3R5-06 1 44087626 44087626 C T PTPRF Silent p.Y1892Y 0.25 TCGA-FW-A3R5-06 1 44364864 44364864 C T ST3GAL3 Silent p.I231I 0.24 TCGA-FW-A3R5-06 1 44415468 44415468 C T IPO13 Missense_Mutation p.S155L 0.19 tolerated(0.4) benign(0.045) TCGA-FW-A3R5-06 1 44415559 44415559 C T IPO13 Silent p.Y185Y 0.25 TCGA-FW-A3R5-06 1 44432665 44432665 C T IPO13 Missense_Mutation p.R863C 0.28 deleterious(0) benign(0.006) TCGA-FW-A3R5-06 1 44433089 44433089 G A IPO13 Missense_Mutation p.E906K 0.33 deleterious(0.02) possibly_damaging(0.552) TCGA-FW-A3R5-06 1 44447081 44447081 C T B4GALT2 Silent p.P112P 0.26 TCGA-FW-A3R5-06 1 44456234 44456234 C T B4GALT2 3'Flank 0.35 TCGA-FW-A3R5-06 1 44457929 44457929 G A CCDC24 Missense_Mutation p.A58T 0.19 tolerated(0.21) benign(0.199) TCGA-FW-A3R5-06 1 44468071 44468071 G A SLC6A9 Silent p.A365A 0.11 TCGA-FW-A3R5-06 1 44477310 44477310 G A SLC6A9 Missense_Mutation p.L58F 0.27 tolerated_low_confidence(0.5) benign(0.037) TCGA-FW-A3R5-06 1 44477369 44477369 G A SLC6A9 Missense_Mutation p.S38F 0.21 deleterious_low_confidence(0.04) benign(0) TCGA-FW-A3R5-06 1 44595299 44595299 C T KLF17 Missense_Mutation p.P119L 0.22 tolerated(0.12) benign(0.221) TCGA-FW-A3R5-06 1 44595350 44595350 G A KLF17 Missense_Mutation p.G136E 0.38 tolerated(0.11) benign(0.104) TCGA-FW-A3R5-06 1 44596233 44596233 C T KLF17 Silent p.F325F 0.31 TCGA-FW-A3R5-06 1 44596418 44596418 C T KLF17 Missense_Mutation p.A387V 0.10 deleterious(0.01) benign(0.026) TCGA-FW-A3R5-06 1 44878220 44878220 C T RNF220 Missense_Mutation p.P151S 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 1 45079881 45079881 T C RNF220 Missense_Mutation p.C224R 0.24 deleterious(0) probably_damaging(0.915) TCGA-FW-A3R5-06 1 45250845 45250845 C T BEST4 Missense_Mutation p.D283N 0.18 tolerated(0.11) benign(0.01) TCGA-FW-A3R5-06 1 45292968 45292968 G A PTCH2 Silent p.A795A 0.14 TCGA-FW-A3R5-06 1 45295117 45295117 G A PTCH2 Missense_Mutation p.S391F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 45295394 45295394 G A PTCH2 Silent p.P325P 0.32 TCGA-FW-A3R5-06 1 45485735 45485735 C T ZSWIM5 Intron 0.26 TCGA-FW-A3R5-06 1 45671756 45671756 G A ZSWIM5 Silent p.I89I 0.31 TCGA-FW-A3R5-06 1 46106066 46106066 G A GPBP1L1 Missense_Mutation p.P187L 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-FW-A3R5-06 1 46120880 46120880 G A GPBP1L1 Missense_Mutation p.P58S 0.34 tolerated(0.21) benign(0.011) TCGA-FW-A3R5-06 1 46474037 46474037 C T MAST2 Silent p.F324F 0.19 TCGA-FW-A3R5-06 1 46655138 46655138 G A POMGNT1 Intron 0.30 TCGA-FW-A3R5-06 1 46659974 46659974 G A POMGNT1 Missense_Mutation p.P284L 0.26 probably_damaging(1) TCGA-FW-A3R5-06 1 46733199 46733199 G A RAD54L Silent p.R320R 0.33 TCGA-FW-A3R5-06 1 46733247 46733247 C T RAD54L Silent p.F336F 0.38 TCGA-FW-A3R5-06 1 46810805 46810805 C T NSUN4 Silent p.F142F 0.32 TCGA-FW-A3R5-06 1 46871292 46871292 C T FAAH Missense_Mutation p.T204I 0.21 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 1 46978120 46978120 C T DMBX1 Missense_Mutation p.A363V 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 47024335 47024335 G A MKNK1 Missense_Mutation p.S437F 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 47042299 47042299 G A MKNK1 Missense_Mutation p.R88W 0.24 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 1 47051572 47051572 G A MKNK1 Intron 0.32 TCGA-FW-A3R5-06 1 47150041 47150041 G A EFCAB14 Intron 0.29 TCGA-FW-A3R5-06 1 47264840 47264840 C T CYP4B1 Silent p.L29L 0.31 TCGA-FW-A3R5-06 1 47278192 47278192 G A CYP4B1 Missense_Mutation p.G131E 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 47278193 47278193 G A CYP4B1 Silent p.G131G 0.31 TCGA-FW-A3R5-06 1 47279210 47279210 G A CYP4B1 Silent p.V184V 0.23 TCGA-FW-A3R5-06 1 47280923 47280923 G A CYP4B1 Missense_Mutation p.D354N 0.31 tolerated(0.13) benign(0.031) TCGA-FW-A3R5-06 1 47325407 47325407 G A CYP4Z2P RNA 0.18 TCGA-FW-A3R5-06 1 47364527 47364527 G A CYP4Z2P RNA 0.35 TCGA-FW-A3R5-06 1 47400029 47400029 C T CYP4A11 Missense_Mutation p.G303R 0.39 tolerated(0.05) benign(0.443) TCGA-FW-A3R5-06 1 47400205 47400205 G A CYP4A11 Nonsense_Mutation p.Q273* 0.24 TCGA-FW-A3R5-06 1 47400212 47400212 C T CYP4A11 Silent p.R270R 0.24 TCGA-FW-A3R5-06 1 47401236 47401236 C T CYP4A11 Missense_Mutation p.M198I 0.27 deleterious(0.02) possibly_damaging(0.461) TCGA-FW-A3R5-06 1 47401263 47401263 G C CYP4A11 Silent p.V189V 0.22 TCGA-FW-A3R5-06 1 47401285 47401285 G A CYP4A11 Missense_Mutation p.P182L 0.20 tolerated(0.33) benign(0.024) TCGA-FW-A3R5-06 1 47403730 47403730 C T CYP4A11 Missense_Mutation p.G92E 0.23 tolerated(0.17) possibly_damaging(0.864) TCGA-FW-A3R5-06 1 47403772 47403772 C T CYP4A11 Nonsense_Mutation p.W78* 0.24 TCGA-FW-A3R5-06 1 47489473 47489473 C T CYP4X1 5'UTR 0.17 TCGA-FW-A3R5-06 1 47489498 47489498 C T CYP4X1 Silent p.F3F 0.19 TCGA-FW-A3R5-06 1 47514238 47514238 G A CYP4X1 Silent p.G403G 0.21 TCGA-FW-A3R5-06 1 47514289 47514289 G A CYP4X1 Nonsense_Mutation p.W420* 0.26 TCGA-FW-A3R5-06 1 47515712 47515712 G A CYP4X1 Missense_Mutation p.V466I 0.30 deleterious(0.03) probably_damaging(0.921) TCGA-FW-A3R5-06 1 47515777 47515777 C T CYP4X1 Silent p.F487F 0.25 TCGA-FW-A3R5-06 1 47515975 47515975 G A CYP4X1 3'UTR 0.33 TCGA-FW-A3R5-06 1 47560332 47560332 G A CYP4Z1 Silent p.L289L 0.26 TCGA-FW-A3R5-06 1 47571890 47571890 C T CYP4Z1 Silent p.L386L 0.07 TCGA-FW-A3R5-06 1 47607787 47607787 C T CYP4A22 Silent p.G130G 0.40 TCGA-FW-A3R5-06 1 47608979 47608979 G A CYP4A22 Silent p.L183L 0.26 TCGA-FW-A3R5-06 1 47610048 47610048 G A CYP4A22 Silent p.R270R 0.15 TCGA-FW-A3R5-06 1 47610124 47610124 C T CYP4A22 Missense_Mutation p.L296F 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 47610225 47610225 G A CYP4A22 Missense_Mutation p.E301K 0.16 deleterious(0.04) benign(0.443) TCGA-FW-A3R5-06 1 47610231 47610231 G A CYP4A22 Missense_Mutation p.G303R 0.14 deleterious(0.05) possibly_damaging(0.651) TCGA-FW-A3R5-06 1 47611866 47611866 G A CYP4A22 Intron 0.26 TCGA-FW-A3R5-06 1 47650692 47650692 G A PDZK1IP1 Missense_Mutation p.S85L 0.28 tolerated(0.11) benign(0.014) TCGA-FW-A3R5-06 1 47653014 47653014 G A PDZK1IP1 Silent p.N51N 0.23 TCGA-FW-A3R5-06 1 47685725 47685725 C T TAL1 Silent p.K221K 0.16 TCGA-FW-A3R5-06 1 47685771 47685771 G A TAL1 Missense_Mutation p.A206V 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 47717316 47717316 G A STIL Missense_Mutation p.T1120I 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 4772291 4772291 C T AJAP1 Missense_Mutation p.P121S 0.33 tolerated(0.23) probably_damaging(0.982) TCGA-FW-A3R5-06 1 4772551 4772551 C T AJAP1 Silent p.S207S 0.28 TCGA-FW-A3R5-06 1 47767944 47767944 G A STIL Missense_Mutation p.S76L 0.24 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 4832520 4832520 C T AJAP1 Silent p.P366P 0.35 TCGA-FW-A3R5-06 1 4832579 4832579 G A AJAP1 Missense_Mutation p.G386E 0.34 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 1 4834515 4834515 C T AJAP1 Missense_Mutation p.P398S 0.09 deleterious(0) possibly_damaging(0.803) TCGA-FW-A3R5-06 1 48695053 48695053 G A SLC5A9 Silent p.K167K 0.10 TCGA-FW-A3R5-06 1 48699373 48699373 G A SLC5A9 Silent p.G385G 0.15 TCGA-FW-A3R5-06 1 48713025 48713025 G A SLC5A9 Missense_Mutation p.G644E 0.25 tolerated(0.41) benign(0.003) TCGA-FW-A3R5-06 1 48713043 48713043 G A SLC5A9 Nonsense_Mutation p.W650* 0.32 TCGA-FW-A3R5-06 1 49119122 49119122 C T AGBL4 Silent p.G242G 0.33 TCGA-FW-A3R5-06 1 49202013 49202013 C T BEND5 Missense_Mutation p.D336N 0.22 deleterious(0.01) benign(0.005) TCGA-FW-A3R5-06 1 50610686 50610686 G A ELAVL4 Missense_Mutation p.G40R 0.10 tolerated_low_confidence(0.26) possibly_damaging(0.568) TCGA-FW-A3R5-06 1 50610836 50610836 G A ELAVL4 Missense_Mutation p.E90K 0.18 tolerated(0.08) benign(0.284) TCGA-FW-A3R5-06 1 50661436 50661436 C T ELAVL4 Missense_Mutation p.H255Y 0.24 tolerated(0.15) benign(0.078) TCGA-FW-A3R5-06 1 50666517 50666517 C T ELAVL4 Intron 0.19 TCGA-FW-A3R5-06 1 50666819 50666819 C T ELAVL4 Missense_Mutation p.S374F 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-FW-A3R5-06 1 51754555 51754555 C T TTC39A Silent p.E526E 0.45 TCGA-FW-A3R5-06 1 51770760 51770760 C T TTC39A Missense_Mutation p.G220E 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 51771684 51771684 C T TTC39A Missense_Mutation p.G189R 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 51777827 51777827 G A TTC39A Silent p.L111L 0.20 TCGA-FW-A3R5-06 1 52264053 52264053 G A NRD1 Silent p.A892A 0.31 TCGA-FW-A3R5-06 1 52269605 52269605 G A NRD1 Missense_Mutation p.L800F 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 1 52442595 52442595 G A RAB3B Silent p.Y65Y 0.30 TCGA-FW-A3R5-06 1 52704941 52704941 C T ZFYVE9 Missense_Mutation p.L618F 0.09 tolerated(0.45) benign(0.001) TCGA-FW-A3R5-06 1 52732463 52732463 G C ZFYVE9 Silent p.V805V 0.30 TCGA-FW-A3R5-06 1 52981473 52981473 G A ZCCHC11 Intron 0.17 TCGA-FW-A3R5-06 1 53122628 53122628 G A FAM159A Missense_Mutation p.M163I 0.08 tolerated(0.26) benign(0.003) TCGA-FW-A3R5-06 1 53236939 53236939 C T ZYG11B Silent p.L148L 0.12 TCGA-FW-A3R5-06 1 53413730 53413730 G A SCP2 Silent p.Q59Q 0.20 TCGA-FW-A3R5-06 1 53413751 53413751 T C SCP2 Silent p.F66F 0.20 TCGA-FW-A3R5-06 1 53459000 53459000 C T SCP2 Intron 0.25 TCGA-FW-A3R5-06 1 53544406 53544406 G A PODN Silent p.E456E 0.28 TCGA-FW-A3R5-06 1 53544456 53544456 C T PODN Missense_Mutation p.A473V 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 53547816 53547816 G A PODN Missense_Mutation p.E657K 0.42 tolerated_low_confidence(0.11) unknown(0) TCGA-FW-A3R5-06 1 53555620 53555620 G A SLC1A7 Intron 0.30 TCGA-FW-A3R5-06 1 53556411 53556411 G A SLC1A7 Missense_Mutation p.R367C 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 53580495 53580495 C T SLC1A7 Silent p.K122K 0.26 TCGA-FW-A3R5-06 1 53925110 53925110 G A DMRTB1 5'UTR 0.23 TCGA-FW-A3R5-06 1 53930377 53930377 C T DMRTB1 Missense_Mutation p.P273L 0.35 tolerated(0.65) benign(0.086) TCGA-FW-A3R5-06 1 53930378 53930378 C T DMRTB1 Silent p.P273P 0.36 TCGA-FW-A3R5-06 1 53932330 53932330 G A DMRTB1 Missense_Mutation p.D342N 0.33 tolerated(0.48) benign(0.007) TCGA-FW-A3R5-06 1 53986319 53986319 C T GLIS1 Missense_Mutation p.E397K 0.19 deleterious(0.01) benign(0.397) TCGA-FW-A3R5-06 1 54060071 54060071 G A GLIS1 Missense_Mutation p.P169S 0.41 tolerated(0.16) probably_damaging(0.997) TCGA-FW-A3R5-06 1 54060232 54060232 C T GLIS1 Missense_Mutation p.G115D 0.23 deleterious_low_confidence(0) benign(0.439) TCGA-FW-A3R5-06 1 54060233 54060233 C T GLIS1 Missense_Mutation p.G115S 0.23 tolerated_low_confidence(0.45) benign(0.029) TCGA-FW-A3R5-06 1 54060279 54060279 G A GLIS1 Silent p.T99T 0.33 TCGA-FW-A3R5-06 1 54060446 54060446 C T GLIS1 Missense_Mutation p.E44K 0.16 deleterious_low_confidence(0) benign(0.18) TCGA-FW-A3R5-06 1 54060477 54060477 G A GLIS1 Silent p.T33T 0.12 TCGA-FW-A3R5-06 1 54262797 54262797 G A NDC1 Missense_Mutation p.P415S 0.34 tolerated(0.21) benign(0.201) TCGA-FW-A3R5-06 1 54272177 54272177 G A NDC1 Missense_Mutation p.P302L 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 54605263 54605263 C T CDCP2 Missense_Mutation p.G427E 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 1 54606840 54606840 C T CDCP2 Missense_Mutation p.E232K 0.21 tolerated(0.21) possibly_damaging(0.701) TCGA-FW-A3R5-06 1 55059688 55059688 C T ACOT11 Silent p.F149F 0.09 TCGA-FW-A3R5-06 1 55069580 55069580 C T ACOT11 Silent p.P374P 0.29 TCGA-FW-A3R5-06 1 55070823 55070823 C T ACOT11 Silent p.A437A 0.21 TCGA-FW-A3R5-06 1 55074852 55074852 C T ACOT11 Intron 0.13 TCGA-FW-A3R5-06 1 55077389 55077389 G A FAM151A Missense_Mutation p.S277L 0.24 tolerated(0.16) benign(0.022) TCGA-FW-A3R5-06 1 55080462 55080462 C T FAM151A Silent p.E162E 0.22 TCGA-FW-A3R5-06 1 55080480 55080480 G A FAM151A Silent p.L156L 0.19 TCGA-FW-A3R5-06 1 55081805 55081805 C T FAM151A Silent p.G101G 0.13 TCGA-FW-A3R5-06 1 55145099 55145099 G A MROH7 Missense_Mutation p.R738K 0.21 tolerated(0.18) benign(0.076) TCGA-FW-A3R5-06 1 55145563 55145563 G A MROH7 Splice_Site p.X743_splice 0.27 TCGA-FW-A3R5-06 1 55145665 55145665 C T MROH7 Silent p.S776S 0.15 TCGA-FW-A3R5-06 1 55151968 55151968 G A MROH7 Missense_Mutation p.S853N 0.26 tolerated(0.07) possibly_damaging(0.888) TCGA-FW-A3R5-06 1 55174690 55174690 C T MROH7 Missense_Mutation p.S1224F 0.24 tolerated(0.74) benign(0.015) TCGA-FW-A3R5-06 1 55174728 55174728 C T MROH7 Missense_Mutation p.R1237C 0.23 tolerated(0.2) benign(0.006) TCGA-FW-A3R5-06 1 55175707 55175707 G A MROH7 Silent p.Q1273Q 0.09 TCGA-FW-A3R5-06 1 55175726 55175726 G A MROH7 Missense_Mutation p.G1280R 0.15 tolerated(0.12) benign(0.201) TCGA-FW-A3R5-06 1 55266666 55266666 G A TTC22 Silent p.L57L 0.39 TCGA-FW-A3R5-06 1 55277720 55277720 G A C1orf177 Missense_Mutation p.G207E 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 55277722 55277722 A T C1orf177 Missense_Mutation p.S208C 0.16 tolerated(0.08) probably_damaging(1) TCGA-FW-A3R5-06 1 55279591 55279591 G A C1orf177 Silent p.P289P 0.24 TCGA-FW-A3R5-06 1 55280655 55280655 C T C1orf177 Silent p.F331F 0.30 TCGA-FW-A3R5-06 1 55280709 55280709 C T C1orf177 Silent p.S349S 0.27 TCGA-FW-A3R5-06 1 55307294 55307294 G A C1orf177 Intron 0.27 TCGA-FW-A3R5-06 1 55307360 55307360 G A C1orf177 Intron 0.25 TCGA-FW-A3R5-06 1 55319263 55319263 G A DHCR24 Missense_Mutation p.P414L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 55457675 55457675 G A TMEM61 Missense_Mutation p.E178K 0.11 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 1 55473947 55473947 G A BSND Missense_Mutation p.M203I 0.28 tolerated(0.41) benign(0.046) TCGA-FW-A3R5-06 1 55474208 55474208 G A BSND Silent p.K290K 0.21 TCGA-FW-A3R5-06 1 55474366 55474366 C T BSND 3'UTR 0.41 TCGA-FW-A3R5-06 1 55569674 55569674 G A USP24 Nonsense_Mutation p.R1634* 0.54 TCGA-FW-A3R5-06 1 55569675 55569675 G A USP24 Silent p.S1633S 0.54 TCGA-FW-A3R5-06 1 55572982 55572982 G A USP24 Silent p.I1564I 0.14 TCGA-FW-A3R5-06 1 56977725 56977725 G A PPAP2B Missense_Mutation p.R245C 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 56989552 56989552 C T PPAP2B Silent p.R192R 0.30 TCGA-FW-A3R5-06 1 57002771 57002771 G A PPAP2B Silent p.F51F 0.21 TCGA-FW-A3R5-06 1 57161729 57161729 G A PRKAA2 Missense_Mutation p.G229S 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 57161747 57161747 G A PRKAA2 Missense_Mutation p.E235K 0.30 tolerated(0.15) benign(0.13) TCGA-FW-A3R5-06 1 57169747 57169747 G A PRKAA2 Missense_Mutation p.E298K 0.29 tolerated(0.18) benign(0.059) TCGA-FW-A3R5-06 1 57169756 57169756 G A PRKAA2 Missense_Mutation p.E301K 0.06 tolerated(0.2) possibly_damaging(0.665) TCGA-FW-A3R5-06 1 57171830 57171830 G A PRKAA2 Missense_Mutation p.M453I 0.30 tolerated(0.2) benign(0.206) TCGA-FW-A3R5-06 1 57185366 57185366 C T C1orf168 Splice_Site p.X722_splice 0.17 TCGA-FW-A3R5-06 1 57189311 57189311 C T C1orf168 Missense_Mutation p.E642K 0.27 tolerated(0.09) benign(0.394) TCGA-FW-A3R5-06 1 57252863 57252863 G A C1orf168 Missense_Mutation p.S313F 0.36 tolerated(0.7) benign(0.009) TCGA-FW-A3R5-06 1 57257852 57257852 C T C1orf168 Missense_Mutation p.D212N 0.30 tolerated(0.06) possibly_damaging(0.881) TCGA-FW-A3R5-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.23 TCGA-FW-A3R5-06 1 57257945 57257945 C T C1orf168 Missense_Mutation p.E181K 0.07 tolerated(0.63) benign(0.034) TCGA-FW-A3R5-06 1 57257988 57257988 G A C1orf168 Silent p.A166A 0.37 TCGA-FW-A3R5-06 1 57320566 57320566 C T C8A 5'UTR 0.32 TCGA-FW-A3R5-06 1 57333376 57333376 G A C8A Splice_Site p.X57_splice 0.20 TCGA-FW-A3R5-06 1 57340662 57340662 G A C8A Missense_Mutation p.G71E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 57347137 57347137 G A C8A Missense_Mutation p.E162K 0.28 tolerated(0.08) benign(0.111) TCGA-FW-A3R5-06 1 57347212 57347212 G A C8A Missense_Mutation p.E187K 0.25 tolerated(0.38) benign(0.003) TCGA-FW-A3R5-06 1 57347305 57347305 G A C8A Missense_Mutation p.E218K 0.31 tolerated(0.23) benign(0.269) TCGA-FW-A3R5-06 1 57349320 57349320 C T C8A Missense_Mutation p.S274L 0.21 tolerated(0.14) benign(0.033) TCGA-FW-A3R5-06 1 57351663 57351663 G A C8A Missense_Mutation p.D307N 0.24 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 1 57372396 57372396 G A C8A Missense_Mutation p.E385K 0.37 tolerated(0.91) benign(0.004) TCGA-FW-A3R5-06 1 57372430 57372430 G A C8A Missense_Mutation p.G396E 0.30 tolerated(0.08) benign(0.151) TCGA-FW-A3R5-06 1 57383352 57383352 C T C8A Missense_Mutation p.S573L 0.25 tolerated(0.12) benign(0.022) TCGA-FW-A3R5-06 1 57395136 57395136 G A C8B Missense_Mutation p.P573S 0.30 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 1 57397487 57397487 C T C8B Silent p.R539R 0.23 TCGA-FW-A3R5-06 1 57399026 57399026 C T C8B Missense_Mutation p.G512R 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 57399115 57399115 G A C8B Missense_Mutation p.S482F 0.29 tolerated(0.15) benign(0.047) TCGA-FW-A3R5-06 1 57406576 57406576 C T C8B Silent p.L448L 0.24 TCGA-FW-A3R5-06 1 57411647 57411647 G A C8B Missense_Mutation p.L318F 0.33 tolerated(0.3) benign(0.159) TCGA-FW-A3R5-06 1 57415241 57415241 C T C8B Missense_Mutation p.R284Q 0.42 tolerated(0.16) benign(0.105) TCGA-FW-A3R5-06 1 57417739 57417739 C T C8B Silent p.V216V 0.32 TCGA-FW-A3R5-06 1 57420500 57420500 C T C8B Missense_Mutation p.G131E 0.16 deleterious(0) possibly_damaging(0.833) TCGA-FW-A3R5-06 1 57422542 57422542 C T C8B Silent p.G97G 0.20 TCGA-FW-A3R5-06 1 57425699 57425699 C T C8B Silent p.K81K 0.32 TCGA-FW-A3R5-06 1 57425826 57425826 C T C8B Missense_Mutation p.G39E 0.08 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 1 57425845 57425845 C T C8B Missense_Mutation p.E33K 0.24 deleterious(0.05) possibly_damaging(0.801) TCGA-FW-A3R5-06 1 57476410 57476410 C T DAB1 Silent p.G542G 0.09 TCGA-FW-A3R5-06 1 57476416 57476416 G A DAB1 Silent p.P540P 0.26 TCGA-FW-A3R5-06 1 57476429 57476429 G A DAB1 Missense_Mutation p.P536L 0.26 tolerated(0.1) benign(0.012) TCGA-FW-A3R5-06 1 57476430 57476430 G A DAB1 Missense_Mutation p.P536S 0.26 tolerated(0.08) benign(0.037) TCGA-FW-A3R5-06 1 57480853 57480853 G A DAB1 Missense_Mutation p.P383S 0.27 tolerated(0.26) benign(0.008) TCGA-FW-A3R5-06 1 57481086 57481086 G A DAB1 Missense_Mutation p.A305V 0.38 tolerated(0.1) benign(0.236) TCGA-FW-A3R5-06 1 57499062 57499062 C T DAB1 Intron 0.45 TCGA-FW-A3R5-06 1 57537224 57537224 C T DAB1 Missense_Mutation p.D177N 0.29 tolerated(0.14) probably_damaging(0.962) TCGA-FW-A3R5-06 1 57602219 57602219 T C DAB1 Silent p.T101T 0.12 TCGA-FW-A3R5-06 1 57611049 57611049 G A DAB1 Missense_Mutation p.R41W 0.26 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 59042069 59042069 C T TACSTD2 Missense_Mutation p.E254K 0.28 deleterious(0.02) possibly_damaging(0.849) TCGA-FW-A3R5-06 1 5947473 5947473 G A NPHP4 Silent p.V786V 0.25 TCGA-FW-A3R5-06 1 59844489 59844489 G A FGGY Silent p.K178K 0.27 TCGA-FW-A3R5-06 1 60228238 60228238 G A FGGY Silent p.A570A 0.23 TCGA-FW-A3R5-06 1 60294471 60294471 G A HOOK1 Missense_Mutation p.E57K 0.11 deleterious(0.03) benign(0.217) TCGA-FW-A3R5-06 1 60328519 60328519 G A HOOK1 Silent p.Q532Q 0.17 TCGA-FW-A3R5-06 1 60330893 60330893 C T HOOK1 Missense_Mutation p.L574F 0.24 deleterious(0.04) benign(0.302) TCGA-FW-A3R5-06 1 60359414 60359414 G A CYP2J2 Missense_Mutation p.P473L 0.27 deleterious(0.02) benign(0.285) TCGA-FW-A3R5-06 1 60359415 60359415 G A CYP2J2 Missense_Mutation p.P473S 0.28 tolerated(0.11) benign(0.14) TCGA-FW-A3R5-06 1 60366656 60366656 G A CYP2J2 Silent p.A437A 0.10 TCGA-FW-A3R5-06 1 60370618 60370618 C T CYP2J2 Missense_Mutation p.M372I 0.29 tolerated(0.15) benign(0.049) TCGA-FW-A3R5-06 1 60375621 60375621 G A CYP2J2 Silent p.V232V 0.29 TCGA-FW-A3R5-06 1 60377841 60377841 C T CYP2J2 Silent p.E172E 0.36 TCGA-FW-A3R5-06 1 60463381 60463381 C T C1orf87 Silent p.V460V 0.28 TCGA-FW-A3R5-06 1 60476093 60476093 G A C1orf87 Missense_Mutation p.S388F 0.31 tolerated(0.14) probably_damaging(0.991) TCGA-FW-A3R5-06 1 60499180 60499180 G A C1orf87 Missense_Mutation p.R333C 0.20 deleterious(0) possibly_damaging(0.736) TCGA-FW-A3R5-06 1 60506800 60506800 G A C1orf87 Missense_Mutation p.P116S 0.36 tolerated(0.89) benign(0.002) TCGA-FW-A3R5-06 1 61553906 61553906 G A NFIA Missense_Mutation p.R83Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 6166483 6166483 G A CHD5 Silent p.N1943N 0.42 TCGA-FW-A3R5-06 1 61824847 61824847 G A NFIA Missense_Mutation p.D328N 0.07 deleterious(0) possibly_damaging(0.627) TCGA-FW-A3R5-06 1 6184141 6184141 C T CHD5 Silent p.G1522G 0.29 TCGA-FW-A3R5-06 1 6184610 6184610 G A CHD5 Silent p.T1502T 0.31 TCGA-FW-A3R5-06 1 6189094 6189094 C T CHD5 Silent p.K1141K 0.39 TCGA-FW-A3R5-06 1 6203924 6203924 C T CHD5 Missense_Mutation p.D668N 0.30 tolerated(0.23) benign(0.063) TCGA-FW-A3R5-06 1 6206765 6206765 C T CHD5 Missense_Mutation p.G517E 0.19 tolerated(0.13) possibly_damaging(0.665) TCGA-FW-A3R5-06 1 62257019 62257019 G A INADL Splice_Site p.X357_splice 0.10 TCGA-FW-A3R5-06 1 6228308 6228308 C T CHD5 Missense_Mutation p.D37N 0.28 tolerated_low_confidence(0.12) possibly_damaging(0.555) TCGA-FW-A3R5-06 1 6228309 6228309 G A CHD5 Silent p.F36F 0.30 TCGA-FW-A3R5-06 1 62299448 62299448 G A INADL Silent p.L701L 0.16 TCGA-FW-A3R5-06 1 62327271 62327271 G A INADL Missense_Mutation p.E791K 0.29 tolerated(0.45) benign(0.031) TCGA-FW-A3R5-06 1 62329911 62329911 G A INADL Missense_Mutation p.G814E 0.14 tolerated(0.45) benign(0.007) TCGA-FW-A3R5-06 1 62329940 62329940 G A INADL Missense_Mutation p.E824K 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-FW-A3R5-06 1 62330131 62330131 G A INADL Silent p.E887E 0.25 TCGA-FW-A3R5-06 1 62516686 62516686 G A INADL Missense_Mutation p.E1361K 0.27 tolerated(0.17) benign(0.01) TCGA-FW-A3R5-06 1 62550251 62550251 G A INADL Missense_Mutation p.M1436I 0.19 tolerated(0.11) possibly_damaging(0.891) TCGA-FW-A3R5-06 1 62579893 62579893 C T INADL Silent p.L1544L 0.22 TCGA-FW-A3R5-06 1 62582306 62582306 G A INADL Silent p.E1586E 0.14 TCGA-FW-A3R5-06 1 62582965 62582965 G A INADL Intron 0.28 TCGA-FW-A3R5-06 1 62586953 62586953 C T INADL Missense_Mutation p.S1664F 0.26 deleterious(0.04) benign(0.008) TCGA-FW-A3R5-06 1 62626611 62626611 G A INADL 3'UTR 0.22 TCGA-FW-A3R5-06 1 62672641 62672641 G A L1TD1 Missense_Mutation p.G114E 0.22 tolerated(0.16) unknown(0) TCGA-FW-A3R5-06 1 62675455 62675455 G A L1TD1 Missense_Mutation p.D337N 0.20 tolerated(0.21) unknown(0) TCGA-FW-A3R5-06 1 62675553 62675553 G A L1TD1 Silent p.E369E 0.17 TCGA-FW-A3R5-06 1 62675554 62675554 G A L1TD1 Missense_Mutation p.E370K 0.18 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 1 62676119 62676119 C T L1TD1 Missense_Mutation p.P558L 0.28 tolerated(0.17) benign(0.136) TCGA-FW-A3R5-06 1 62677131 62677131 C T L1TD1 3'UTR 0.28 TCGA-FW-A3R5-06 1 62718868 62718868 C T KANK4 Silent p.V851V 0.22 TCGA-FW-A3R5-06 1 62738910 62738910 C T KANK4 Silent p.K622K 0.40 TCGA-FW-A3R5-06 1 62739651 62739651 C T KANK4 Silent p.E375E 0.24 TCGA-FW-A3R5-06 1 62739693 62739693 C T KANK4 Silent p.E361E 0.20 TCGA-FW-A3R5-06 1 62739945 62739945 G A KANK4 Silent p.F277F 0.45 TCGA-FW-A3R5-06 1 62740234 62740234 C T KANK4 Missense_Mutation p.S181N 0.11 tolerated(0.64) benign(0.341) TCGA-FW-A3R5-06 1 62740730 62740730 C T KANK4 Missense_Mutation p.E16K 0.25 deleterious(0.02) benign(0.002) TCGA-FW-A3R5-06 1 62941524 62941524 G A DOCK7 Missense_Mutation p.R1908C 0.28 deleterious(0.01) possibly_damaging(0.531) TCGA-FW-A3R5-06 1 63005497 63005497 G A DOCK7 Missense_Mutation p.P1007S 0.36 tolerated(0.78) benign(0.042) TCGA-FW-A3R5-06 1 63044633 63044633 G A DOCK7 Missense_Mutation p.P626S 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 63282323 63282323 C T ATG4C Missense_Mutation p.R80C 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 6445578 6445578 G A ACOT7 Missense_Mutation p.P50L 0.22 tolerated_low_confidence(0.06) benign(0.001) TCGA-FW-A3R5-06 1 64643413 64643413 C T ROR1 Silent p.F563F 0.22 TCGA-FW-A3R5-06 1 64644097 64644097 C T ROR1 Silent p.F791F 0.23 TCGA-FW-A3R5-06 1 64644340 64644340 C T ROR1 Silent p.P872P 0.19 TCGA-FW-A3R5-06 1 64644594 64644594 G A ROR1 3'UTR 0.27 TCGA-FW-A3R5-06 1 64671346 64671346 G A UBE2U Missense_Mutation p.E31K 0.29 deleterious(0.02) benign(0.241) TCGA-FW-A3R5-06 1 64671357 64671357 G A UBE2U Missense_Mutation p.M34I 0.18 deleterious(0.01) possibly_damaging(0.786) TCGA-FW-A3R5-06 1 64707407 64707407 G A UBE2U Nonsense_Mutation p.W223* 0.19 TCGA-FW-A3R5-06 1 6488466 6488466 G A ESPN Missense_Mutation p.E159K 0.30 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 1 6501056 6501056 G A ESPN Silent p.T307T 0.17 TCGA-FW-A3R5-06 1 6505811 6505811 A T ESPN Missense_Mutation p.K427M 0.43 deleterious(0.02) possibly_damaging(0.548) TCGA-FW-A3R5-06 1 6511792 6511792 G A ESPN Missense_Mutation p.G682E 0.25 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 1 6511995 6511995 C T ESPN Missense_Mutation p.P722S 0.18 tolerated(0.05) possibly_damaging(0.611) TCGA-FW-A3R5-06 1 65124444 65124444 G A CACHD1 Silent p.V562V 0.37 TCGA-FW-A3R5-06 1 65129479 65129479 C T CACHD1 Missense_Mutation p.L634F 0.16 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 65141095 65141095 G A CACHD1 Silent p.T862T 0.27 TCGA-FW-A3R5-06 1 6520073 6520073 G A ESPN Missense_Mutation p.R811Q 0.21 tolerated(0.14) benign(0.137) TCGA-FW-A3R5-06 1 6520098 6520098 G A ESPN Silent p.R819R 0.28 TCGA-FW-A3R5-06 1 6520233 6520233 C T ESPN 3'UTR 0.34 TCGA-FW-A3R5-06 1 6521698 6521698 G A TNFRSF25 Silent p.F359F 0.28 TCGA-FW-A3R5-06 1 6522131 6522131 G A TNFRSF25 Missense_Mutation p.P292L 0.23 tolerated(0.07) benign(0.017) TCGA-FW-A3R5-06 1 6525594 6525594 G A TNFRSF25 Silent p.A22A 0.41 TCGA-FW-A3R5-06 1 6526169 6526169 G A TNFRSF25 5'UTR 0.45 TCGA-FW-A3R5-06 1 6527981 6527981 G A PLEKHG5 Missense_Mutation p.P1051L 0.38 tolerated_low_confidence(0.08) benign(0.25) TCGA-FW-A3R5-06 1 6529206 6529206 C T PLEKHG5 Silent p.E794E 0.18 TCGA-FW-A3R5-06 1 65325929 65325929 G A JAK1 Missense_Mutation p.S398F 0.24 tolerated(0.06) possibly_damaging(0.489) TCGA-FW-A3R5-06 1 6533066 6533066 C T PLEKHG5 Missense_Mutation p.E401K 0.20 deleterious(0.04) benign(0.306) TCGA-FW-A3R5-06 1 66067164 66067164 C T LEPR Missense_Mutation p.P362S 0.11 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 1 66075705 66075705 C T LEPR Nonsense_Mutation p.Q610* 0.29 TCGA-FW-A3R5-06 1 66075971 66075971 C T LEPR Missense_Mutation p.L663F 0.13 tolerated(0.19) benign(0.02) TCGA-FW-A3R5-06 1 66101939 66101939 G A LEPR Silent p.L913L 0.25 TCGA-FW-A3R5-06 1 6610651 6610651 G A NOL9 Missense_Mutation p.R141C 0.25 tolerated(0.1) benign(0.01) TCGA-FW-A3R5-06 1 6634900 6634900 G A TAS1R1 Silent p.G236G 0.37 TCGA-FW-A3R5-06 1 6639129 6639129 C T TAS1R1 Missense_Mutation p.H671Y 0.18 tolerated(0.1) benign(0.003) TCGA-FW-A3R5-06 1 6681627 6681627 G A PHF13 Missense_Mutation p.R278Q 0.24 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 1 66829101 66829101 C T PDE4B Silent p.L377L 0.23 TCGA-FW-A3R5-06 1 67155970 67155970 C T SGIP1 Missense_Mutation p.S514F 0.28 deleterious(0.01) probably_damaging(0.962) TCGA-FW-A3R5-06 1 67161070 67161070 C T SGIP1 Intron 0.09 TCGA-FW-A3R5-06 1 67220438 67220438 G A TCTEX1D1 Missense_Mutation p.E33K 0.24 tolerated(0.14) benign(0.008) TCGA-FW-A3R5-06 1 67263912 67263912 G A INSL5 Silent p.S64S 0.21 TCGA-FW-A3R5-06 1 6741093 6741093 G A DNAJC11 Missense_Mutation p.S26F 0.09 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 1 67559037 67559037 G A C1orf141 Missense_Mutation p.S285F 0.20 deleterious(0.04) probably_damaging(0.919) TCGA-FW-A3R5-06 1 67560983 67560983 C T C1orf141 Missense_Mutation p.E180K 0.27 deleterious(0.01) possibly_damaging(0.801) TCGA-FW-A3R5-06 1 67861377 67861377 G A IL12RB2 Missense_Mutation p.G732R 0.25 tolerated(0.09) benign(0.033) TCGA-FW-A3R5-06 1 68619310 68619310 G A WLS Silent p.T229T 0.30 TCGA-FW-A3R5-06 1 68903887 68903887 G A RPE65 Missense_Mutation p.P371S 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 68905294 68905294 G A RPE65 Silent p.I225I 0.20 TCGA-FW-A3R5-06 1 68910518 68910518 G A RPE65 Silent p.I98I 0.30 TCGA-FW-A3R5-06 1 68912536 68912536 G A RPE65 Silent p.I34I 0.22 TCGA-FW-A3R5-06 1 68947229 68947229 G A DEPDC1 Missense_Mutation p.P610L 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 70144128 70144128 C T LRRC7 Missense_Mutation p.R23C 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-FW-A3R5-06 1 70257751 70257751 G A LRRC7 Missense_Mutation p.R72Q 0.25 deleterious(0.03) probably_damaging(0.981) TCGA-FW-A3R5-06 1 70303932 70303932 G A LRRC7 Missense_Mutation p.E167K 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 1 70339184 70339184 C T LRRC7 Intron 0.26 TCGA-FW-A3R5-06 1 70385326 70385326 G A LRRC7 Intron 0.40 TCGA-FW-A3R5-06 1 70502256 70502256 C T LRRC7 Missense_Mutation p.S708F 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 1 70504230 70504230 C T LRRC7 Missense_Mutation p.P870L 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 70504556 70504556 G A LRRC7 Missense_Mutation p.E979K 0.24 deleterious(0.04) benign(0.443) TCGA-FW-A3R5-06 1 70504631 70504631 G A LRRC7 Missense_Mutation p.D1004N 0.20 tolerated(0.27) probably_damaging(0.995) TCGA-FW-A3R5-06 1 70541868 70541868 C T LRRC7 Nonsense_Mutation p.Q1409* 0.32 TCGA-FW-A3R5-06 1 70555477 70555477 G A LRRC7 Missense_Mutation p.G1469E 0.22 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 1 70644631 70644631 G A LRRC40 Missense_Mutation p.P236L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 70716379 70716379 C T SRSF11 Missense_Mutation p.S449F 0.14 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FW-A3R5-06 1 71318500 71318500 G A PTGER3 3'UTR 0.15 TCGA-FW-A3R5-06 1 7151403 7151403 G A CAMTA1 Missense_Mutation p.E92K 0.30 deleterious(0) benign(0.197) TCGA-FW-A3R5-06 1 71530793 71530793 G A ZRANB2 Silent p.S319S 0.09 TCGA-FW-A3R5-06 1 74507303 74507303 C T LRRIQ3 Missense_Mutation p.E438K 0.30 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 1 74507520 74507520 C T LRRIQ3 Silent p.K365K 0.24 TCGA-FW-A3R5-06 1 74540379 74540379 C T LRRIQ3 Missense_Mutation p.M321I 0.38 tolerated(0.27) benign(0) TCGA-FW-A3R5-06 1 75005954 75005954 G A TNNI3K Silent p.E897E 0.24 TCGA-FW-A3R5-06 1 75036941 75036941 C T C1orf173 Missense_Mutation p.E1485K 0.30 deleterious(0.03) benign(0.063) TCGA-FW-A3R5-06 1 75036942 75036942 C T C1orf173 Silent p.R1484R 0.30 TCGA-FW-A3R5-06 1 75037470 75037470 C T C1orf173 Silent p.A1308A 0.33 TCGA-FW-A3R5-06 1 75037935 75037935 C T C1orf173 Silent p.V1153V 0.24 TCGA-FW-A3R5-06 1 75038129 75038129 C T C1orf173 Missense_Mutation p.E1089K 0.29 tolerated(0.08) benign(0.017) TCGA-FW-A3R5-06 1 75038215 75038215 C T C1orf173 Missense_Mutation p.R1060Q 0.31 deleterious(0.04) benign(0.313) TCGA-FW-A3R5-06 1 75038256 75038256 C T C1orf173 Silent p.R1046R 0.22 TCGA-FW-A3R5-06 1 75038664 75038664 G A C1orf173 Silent p.A910A 0.25 TCGA-FW-A3R5-06 1 75038703 75038703 C T C1orf173 Silent p.Q897Q 0.25 TCGA-FW-A3R5-06 1 75038981 75038981 G A C1orf173 Missense_Mutation p.H805Y 0.28 deleterious(0.02) benign(0.253) TCGA-FW-A3R5-06 1 75042611 75042611 G A C1orf173 Missense_Mutation p.S729L 0.25 tolerated(0.45) benign(0) TCGA-FW-A3R5-06 1 75055232 75055232 C T C1orf173 Intron 0.31 TCGA-FW-A3R5-06 1 75055504 75055504 C T C1orf173 Missense_Mutation p.E663K 0.19 tolerated(0.05) benign(0.44) TCGA-FW-A3R5-06 1 75055528 75055528 C T C1orf173 Missense_Mutation p.E655K 0.19 deleterious(0.04) possibly_damaging(0.546) TCGA-FW-A3R5-06 1 75055529 75055529 C T C1orf173 Silent p.V654V 0.18 TCGA-FW-A3R5-06 1 75065478 75065478 C T C1orf173 Missense_Mutation p.E543K 0.18 tolerated(0.07) possibly_damaging(0.621) TCGA-FW-A3R5-06 1 75065531 75065531 C T C1orf173 Missense_Mutation p.G525E 0.26 tolerated(0.12) benign(0.199) TCGA-FW-A3R5-06 1 75072303 75072303 C T C1orf173 Missense_Mutation p.E491K 0.06 deleterious(0.02) possibly_damaging(0.7) TCGA-FW-A3R5-06 1 75078455 75078455 G A C1orf173 Missense_Mutation p.P347S 0.31 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 1 75102019 75102019 G A C1orf173 Missense_Mutation p.S183L 0.24 tolerated(0.18) benign(0.076) TCGA-FW-A3R5-06 1 75107041 75107041 C T C1orf173 Missense_Mutation p.E140K 0.17 tolerated(0.05) possibly_damaging(0.555) TCGA-FW-A3R5-06 1 75108723 75108723 G A C1orf173 Silent p.I101I 0.27 TCGA-FW-A3R5-06 1 75108735 75108735 C T C1orf173 Silent p.R97R 0.27 TCGA-FW-A3R5-06 1 75609555 75609555 C T LHX8 Silent p.A212A 0.24 TCGA-FW-A3R5-06 1 75679468 75679468 G A SLC44A5 Silent p.A628A 0.31 TCGA-FW-A3R5-06 1 75740713 75740713 C T SLC44A5 Missense_Mutation p.D64N 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-FW-A3R5-06 1 76397607 76397607 C T ASB17 Missense_Mutation p.D124N 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.811) TCGA-FW-A3R5-06 1 76397716 76397716 G A ASB17 Silent p.L87L 0.09 TCGA-FW-A3R5-06 1 7723933 7723933 C T CAMTA1 Silent p.F442F 0.26 TCGA-FW-A3R5-06 1 7724283 7724283 C T CAMTA1 Missense_Mutation p.S559F 0.22 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-FW-A3R5-06 1 77515942 77515942 G A ST6GALNAC5 Splice_Site p.X224_splice 0.06 TCGA-FW-A3R5-06 1 77620246 77620246 G A PIGK Nonsense_Mutation p.Q292* 0.22 TCGA-FW-A3R5-06 1 77984380 77984380 G A AK5 Missense_Mutation p.D427N 0.22 tolerated(0.12) benign(0.037) TCGA-FW-A3R5-06 1 7806009 7806009 C T CAMTA1 Missense_Mutation p.A1492V 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-FW-A3R5-06 1 78162928 78162928 G A USP33 3'UTR 0.38 TCGA-FW-A3R5-06 1 78269072 78269072 C T FAM73A Missense_Mutation p.S164F 0.23 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 1 78383885 78383885 G A NEXN Missense_Mutation p.R125Q 0.30 deleterious(0.01) possibly_damaging(0.735) TCGA-FW-A3R5-06 1 78392180 78392180 G A NEXN Missense_Mutation p.D191N 0.08 tolerated(0.2) benign(0.102) TCGA-FW-A3R5-06 1 78398979 78398979 G A NEXN Missense_Mutation p.D356N 0.10 deleterious(0) possibly_damaging(0.786) TCGA-FW-A3R5-06 1 78432425 78432425 G A FUBP1 Silent p.G142G 0.29 TCGA-FW-A3R5-06 1 78444657 78444657 G A FUBP1 Missense_Mutation p.S11F 0.33 deleterious(0.01) benign(0.395) TCGA-FW-A3R5-06 1 78958579 78958579 C T PTGFR Missense_Mutation p.L51F 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 78959016 78959016 G A PTGFR Nonsense_Mutation p.W196* 0.09 TCGA-FW-A3R5-06 1 79002463 79002463 G A PTGFR 3'UTR 0.41 TCGA-FW-A3R5-06 1 79002464 79002464 G A PTGFR 3'UTR 0.41 TCGA-FW-A3R5-06 1 79107603 79107603 C T IFI44L 3'UTR 0.25 TCGA-FW-A3R5-06 1 79121182 79121182 C T IFI44 Missense_Mutation p.R276C 0.12 deleterious(0) possibly_damaging(0.613) TCGA-FW-A3R5-06 1 79128395 79128395 G A IFI44 Missense_Mutation p.E374K 0.10 tolerated(0.92) benign(0.035) TCGA-FW-A3R5-06 1 79387418 79387418 G A ELTD1 Silent p.T379T 0.28 TCGA-FW-A3R5-06 1 79387423 79387423 C T ELTD1 Missense_Mutation p.D378N 0.12 tolerated(0.22) benign(0.042) TCGA-FW-A3R5-06 1 79392661 79392661 G A ELTD1 Silent p.V331V 0.25 TCGA-FW-A3R5-06 1 7995115 7995115 C T TNFRSF9 Missense_Mutation p.G168R 0.15 deleterious(0.02) benign(0.014) TCGA-FW-A3R5-06 1 8000004 8000004 G A TNFRSF9 Silent p.N17N 0.30 TCGA-FW-A3R5-06 1 8025434 8025434 C T PARK7 Silent p.S47S 0.36 TCGA-FW-A3R5-06 1 8073739 8073739 G A ERRFI1 Missense_Mutation p.S307L 0.29 deleterious(0) possibly_damaging(0.685) TCGA-FW-A3R5-06 1 8073809 8073809 G T ERRFI1 Missense_Mutation p.P284T 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 82402423 82402423 G A LPHN2 Missense_Mutation p.R100Q 0.31 tolerated(0.12) probably_damaging(0.998) TCGA-FW-A3R5-06 1 82416145 82416145 C T LPHN2 Missense_Mutation p.P491S 0.23 tolerated(0.07) possibly_damaging(0.55) TCGA-FW-A3R5-06 1 82416146 82416146 C T LPHN2 Missense_Mutation p.P491L 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-FW-A3R5-06 1 82421702 82421702 C T LPHN2 Missense_Mutation p.L642F 0.14 deleterious(0.02) benign(0.16) TCGA-FW-A3R5-06 1 82447513 82447513 C T LPHN2 Silent p.F1028F 0.22 TCGA-FW-A3R5-06 1 82456472 82456472 G A LPHN2 Silent p.K1285K 0.31 TCGA-FW-A3R5-06 1 82456903 82456903 C T LPHN2 3'UTR 0.31 TCGA-FW-A3R5-06 1 8390352 8390352 C T SLC45A1 Nonsense_Mutation p.R267* 0.25 TCGA-FW-A3R5-06 1 8390532 8390532 C T SLC45A1 Missense_Mutation p.P327S 0.18 tolerated(1) benign(0.018) TCGA-FW-A3R5-06 1 8399573 8399573 G A SLC45A1 Missense_Mutation p.E599K 0.22 tolerated(0.18) benign(0.184) TCGA-FW-A3R5-06 1 8418949 8418949 G A RERE Missense_Mutation p.R1216C 0.43 unknown(0) TCGA-FW-A3R5-06 1 8420714 8420714 G A RERE Silent p.L951L 0.25 TCGA-FW-A3R5-06 1 8421909 8421909 G A RERE Missense_Mutation p.L644F 0.31 probably_damaging(0.959) TCGA-FW-A3R5-06 1 85279804 85279804 C T LPAR3 Missense_Mutation p.G263S 0.34 deleterious(0.04) probably_damaging(0.982) TCGA-FW-A3R5-06 1 85331096 85331096 C T LPAR3 Silent p.K236K 0.44 TCGA-FW-A3R5-06 1 85331570 85331570 G A LPAR3 Silent p.F78F 0.11 TCGA-FW-A3R5-06 1 85331609 85331609 G A LPAR3 Silent p.F65F 0.16 TCGA-FW-A3R5-06 1 85331807 85331807 G A LPAR3 5'UTR 0.18 TCGA-FW-A3R5-06 1 85424379 85424379 G A MCOLN2 Missense_Mutation p.R82C 0.21 deleterious(0.05) benign(0.014) TCGA-FW-A3R5-06 1 85570255 85570255 C T WDR63 Nonsense_Mutation p.Q510* 0.21 TCGA-FW-A3R5-06 1 85733503 85733503 G A BCL10 Missense_Mutation p.S170F 0.12 deleterious(0.02) possibly_damaging(0.768) TCGA-FW-A3R5-06 1 85817238 85817238 G A DDAH1 Missense_Mutation p.S143F 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 86196269 86196269 C T COL24A1 Missense_Mutation p.R1702Q 0.27 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 1 86200608 86200608 G A COL24A1 Missense_Mutation p.H1608Y 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 86249817 86249817 G A COL24A1 Silent p.F1400F 0.26 TCGA-FW-A3R5-06 1 86340354 86340354 C T COL24A1 Missense_Mutation p.G1039E 0.28 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 1 86355248 86355248 C T COL24A1 Missense_Mutation p.E991K 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 1 86487924 86487924 G A COL24A1 Missense_Mutation p.S752L 0.30 tolerated(0.55) benign(0.015) TCGA-FW-A3R5-06 1 86524856 86524856 C T COL24A1 Missense_Mutation p.G585E 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 86590635 86590635 C T COL24A1 Missense_Mutation p.E462K 0.19 tolerated(0.23) benign(0.009) TCGA-FW-A3R5-06 1 86591475 86591475 C T COL24A1 Missense_Mutation p.G182R 0.11 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 1 86896591 86896591 C T CLCA2 Silent p.F174F 0.31 TCGA-FW-A3R5-06 1 86905850 86905850 G A CLCA2 Missense_Mutation p.G408E 0.26 tolerated(0.22) probably_damaging(1) TCGA-FW-A3R5-06 1 86947885 86947885 C T CLCA1 Intron 0.21 TCGA-FW-A3R5-06 1 86954766 86954766 G A CLCA1 Missense_Mutation p.E424K 0.18 tolerated(0.16) possibly_damaging(0.542) TCGA-FW-A3R5-06 1 86954832 86954832 G A CLCA1 Missense_Mutation p.E446K 0.13 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.21 TCGA-FW-A3R5-06 1 86965435 86965435 G A CLCA1 Missense_Mutation p.E818K 0.19 tolerated(0.07) benign(0.008) TCGA-FW-A3R5-06 1 87025895 87025895 C T CLCA4 Missense_Mutation p.A101V 0.28 deleterious(0.01) possibly_damaging(0.654) TCGA-FW-A3R5-06 1 87026001 87026001 C T CLCA4 Silent p.D136D 0.33 TCGA-FW-A3R5-06 1 87029421 87029421 C T CLCA4 Missense_Mutation p.R176C 0.26 tolerated(0.08) benign(0.155) TCGA-FW-A3R5-06 1 87040294 87040294 G A CLCA4 Silent p.V513V 0.28 TCGA-FW-A3R5-06 1 87040428 87040428 G A CLCA4 Missense_Mutation p.G558E 0.15 deleterious(0.03) possibly_damaging(0.651) TCGA-FW-A3R5-06 1 87040429 87040429 A T CLCA4 Silent p.G558G 0.16 TCGA-FW-A3R5-06 1 87045045 87045045 G A CLCA4 Missense_Mutation p.E711K 0.36 tolerated(0.81) benign(0.003) TCGA-FW-A3R5-06 1 87045064 87045064 C T CLCA4 Missense_Mutation p.P717L 0.31 deleterious(0) benign(0.111) TCGA-FW-A3R5-06 1 87045156 87045156 C T CLCA4 Missense_Mutation p.P748S 0.33 tolerated(0.22) benign(0.005) TCGA-FW-A3R5-06 1 87045909 87045909 C T CLCA4 Missense_Mutation p.P881S 0.21 tolerated(0.13) benign(0.003) TCGA-FW-A3R5-06 1 87563681 87563681 C T HS2ST1 Intron 0.35 TCGA-FW-A3R5-06 1 888594 888594 G A NOC2L Silent p.C321C 0.08 TCGA-FW-A3R5-06 1 8924024 8924024 G A ENO1 Silent p.A331A 0.27 TCGA-FW-A3R5-06 1 8924025 8924025 G T ENO1 Missense_Mutation p.A331D 0.28 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-FW-A3R5-06 1 89271785 89271785 C T PKN2 Intron 0.19 TCGA-FW-A3R5-06 1 89477649 89477649 C T GBP3 Missense_Mutation p.M310I 0.36 tolerated(0.17) benign(0.015) TCGA-FW-A3R5-06 1 89481012 89481012 G A GBP3 Silent p.T92T 0.27 TCGA-FW-A3R5-06 1 89521767 89521767 G A GBP1 Missense_Mutation p.R434C 0.26 tolerated(0.12) benign(0.01) TCGA-FW-A3R5-06 1 89521887 89521887 C T GBP1 Missense_Mutation p.D394N 0.23 tolerated(0.15) probably_damaging(0.995) TCGA-FW-A3R5-06 1 89524656 89524656 C T GBP1 Missense_Mutation p.D167N 0.33 tolerated(0.07) possibly_damaging(0.716) TCGA-FW-A3R5-06 1 89525033 89525033 C T GBP1 Missense_Mutation p.G132E 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 89573818 89573818 G A GBP2 3'UTR 0.28 TCGA-FW-A3R5-06 1 89618032 89618032 C T GBP7 Missense_Mutation p.D182N 0.16 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 1 89658656 89658656 C T GBP4 Missense_Mutation p.E201K 0.24 tolerated(0.11) possibly_damaging(0.58) TCGA-FW-A3R5-06 1 89660999 89660999 C T GBP4 Missense_Mutation p.G115D 0.28 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 1 89662818 89662818 C T GBP4 Missense_Mutation p.M70I 0.24 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 1 89733119 89733119 C T GBP5 Missense_Mutation p.G137S 0.29 deleterious(0.01) benign(0.063) TCGA-FW-A3R5-06 1 89735049 89735049 C T GBP5 Missense_Mutation p.G64S 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 1 89735315 89735315 G A GBP5 Intron 0.33 TCGA-FW-A3R5-06 1 89844102 89844102 G A GBP6 Silent p.L185L 0.23 TCGA-FW-A3R5-06 1 89847259 89847259 G A GBP6 Missense_Mutation p.G293E 0.27 tolerated(0.64) benign(0.367) TCGA-FW-A3R5-06 1 89851084 89851084 C T GBP6 3'UTR 0.41 TCGA-FW-A3R5-06 1 89886716 89886716 G A GBP1P1 RNA 0.24 TCGA-FW-A3R5-06 1 89889957 89889957 G A GBP1P1 RNA 0.21 TCGA-FW-A3R5-06 1 9009324 9009324 G A CA6 Missense_Mutation p.G28R 0.18 deleterious(0) possibly_damaging(0.833) TCGA-FW-A3R5-06 1 90179560 90179560 T C LRRC8C Silent p.C477C 0.29 TCGA-FW-A3R5-06 1 9027799 9027799 C T CA6 Missense_Mutation p.S218L 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 90493234 90493234 C T ZNF326 Missense_Mutation p.P575S 0.34 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 1 907761 907761 G A PLEKHN1 Missense_Mutation p.G320E 0.70 deleterious(0.01) possibly_damaging(0.844) TCGA-FW-A3R5-06 1 9098032 9098032 G A SLC2A5 Missense_Mutation p.P409L 0.31 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 1 9098546 9098546 G A SLC2A5 Missense_Mutation p.P373L 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 1 9100123 9100123 C T SLC2A5 Missense_Mutation p.A233T 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-FW-A3R5-06 1 9100181 9100181 G A SLC2A5 Silent p.F213F 0.27 TCGA-FW-A3R5-06 1 9101810 9101810 G A SLC2A5 Intron 0.18 TCGA-FW-A3R5-06 1 9117527 9117527 G A SLC2A5 Silent p.P91P 0.35 TCGA-FW-A3R5-06 1 91177971 91177971 C T BARHL2 Silent p.R354R 0.27 TCGA-FW-A3R5-06 1 9118220 9118220 G A SLC2A5 Silent p.S41S 0.36 TCGA-FW-A3R5-06 1 91404546 91404546 G A ZNF644 Missense_Mutation p.P789S 0.27 tolerated(0.75) benign(0) TCGA-FW-A3R5-06 1 91404608 91404608 G A ZNF644 Missense_Mutation p.S768L 0.39 deleterious_low_confidence(0.01) benign(0.218) TCGA-FW-A3R5-06 1 91844621 91844621 G A HFM1 Missense_Mutation p.P386L 0.41 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 1 92428405 92428405 C A BRDT Missense_Mutation p.L32I 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 1 92442776 92442776 G A BRDT Silent p.K265K 0.23 TCGA-FW-A3R5-06 1 92470044 92470044 C T BRDT Missense_Mutation p.S821F 0.28 deleterious(0) possibly_damaging(0.794) TCGA-FW-A3R5-06 1 92511195 92511195 C T EPHX4 Silent p.F194F 0.26 TCGA-FW-A3R5-06 1 92546058 92546058 C T BTBD8 5'UTR 0.21 TCGA-FW-A3R5-06 1 92568189 92568189 G A BTBD8 Silent p.E169E 0.28 TCGA-FW-A3R5-06 1 92606763 92606763 C T BTBD8 Nonsense_Mutation p.Q309* 0.31 TCGA-FW-A3R5-06 1 92707838 92707838 G A C1orf146 Missense_Mutation p.G46R 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 1 92798992 92798992 G A RPAP2 Silent p.Q500Q 0.15 TCGA-FW-A3R5-06 1 92946183 92946183 G A GFI1 Missense_Mutation p.S254F 0.46 deleterious(0) possibly_damaging(0.776) TCGA-FW-A3R5-06 1 92948963 92948963 G A GFI1 Missense_Mutation p.R28C 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.876) TCGA-FW-A3R5-06 1 93301949 93301949 G A RPL5 Missense_Mutation p.S176N 0.27 tolerated(0.13) benign(0) TCGA-FW-A3R5-06 1 94140254 94140254 G A BCAR3 Missense_Mutation p.S78F 0.20 tolerated(0.07) possibly_damaging(0.759) TCGA-FW-A3R5-06 1 9416153 9416153 A G SPSB1 Missense_Mutation p.K68R 0.23 deleterious(0.01) probably_damaging(0.917) TCGA-FW-A3R5-06 1 94335415 94335415 G A DNTTIP2 Missense_Mutation p.R755C 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 1 94463552 94463552 C T ABCA4 Silent p.Q2198Q 0.39 TCGA-FW-A3R5-06 1 94470994 94470994 C T ABCA4 Intron 0.41 TCGA-FW-A3R5-06 1 94481369 94481369 G A ABCA4 Silent p.F1746F 0.19 TCGA-FW-A3R5-06 1 94495007 94495007 G A ABCA4 Silent p.P1511P 0.55 TCGA-FW-A3R5-06 1 94495139 94495139 G A ABCA4 Silent p.S1467S 0.10 TCGA-FW-A3R5-06 1 94502338 94502338 G A ABCA4 Silent p.L1274L 0.13 TCGA-FW-A3R5-06 1 94502778 94502778 G A ABCA4 Missense_Mutation p.L1246F 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 1 94508333 94508333 G A ABCA4 Silent p.L1104L 0.30 TCGA-FW-A3R5-06 1 94512578 94512578 C T ABCA4 Missense_Mutation p.E939K 0.09 tolerated(1) benign(0.044) TCGA-FW-A3R5-06 1 94514490 94514490 C T ABCA4 Missense_Mutation p.A893T 0.18 tolerated(0.47) benign(0.004) TCGA-FW-A3R5-06 1 94548945 94548945 C T ABCA4 Missense_Mutation p.G274E 0.05 tolerated(0.29) benign(0.273) TCGA-FW-A3R5-06 1 94574247 94574247 G A ABCA4 Nonsense_Mutation p.Q110* 0.33 TCGA-FW-A3R5-06 1 94586593 94586593 G A ABCA4 Silent p.F3F 0.34 TCGA-FW-A3R5-06 1 94645345 94645345 G A ARHGAP29 Missense_Mutation p.L806F 0.27 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 1 94650952 94650952 C T ARHGAP29 Silent p.T622T 0.22 TCGA-FW-A3R5-06 1 94650958 94650958 G A ARHGAP29 Silent p.S620S 0.30 TCGA-FW-A3R5-06 1 94652133 94652133 G A ARHGAP29 Missense_Mutation p.P568S 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 1 94667978 94667978 G A ARHGAP29 Intron 0.18 TCGA-FW-A3R5-06 1 94668201 94668201 G A ARHGAP29 Missense_Mutation p.R348C 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 1 94670698 94670698 C T ARHGAP29 Missense_Mutation p.E206K 0.21 tolerated(0.05) benign(0.017) TCGA-FW-A3R5-06 1 94671197 94671197 C T ARHGAP29 Missense_Mutation p.E185K 0.27 deleterious(0.01) possibly_damaging(0.601) TCGA-FW-A3R5-06 1 94674868 94674868 C T ARHGAP29 Missense_Mutation p.D127N 0.20 tolerated(0.06) possibly_damaging(0.647) TCGA-FW-A3R5-06 1 94964161 94964161 C T ABCD3 Nonsense_Mutation p.R464* 0.15 TCGA-FW-A3R5-06 1 95290159 95290159 C T SLC44A3 Silent p.A82A 0.13 TCGA-FW-A3R5-06 1 95307561 95307561 T G SLC44A3 Missense_Mutation p.C256G 0.22 deleterious(0.01) benign(0.354) TCGA-FW-A3R5-06 1 95363566 95363566 G A CNN3 Missense_Mutation p.S241L 0.26 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 1 95368697 95368697 G A CNN3 Missense_Mutation p.S76F 0.34 deleterious(0.01) possibly_damaging(0.807) TCGA-FW-A3R5-06 1 95657146 95657146 G A TMEM56 Missense_Mutation p.A172T 0.29 tolerated(0.26) possibly_damaging(0.493) TCGA-FW-A3R5-06 1 9661297 9661297 C T TMEM201 Silent p.P247P 0.08 TCGA-FW-A3R5-06 1 9714487 9714487 G A C1orf200 Missense_Mutation p.S3F 0.31 tolerated_low_confidence(0.94) possibly_damaging(0.683) TCGA-FW-A3R5-06 1 97236339 97236339 C T PTBP2 Missense_Mutation p.R122C 0.14 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 1 97544521 97544521 C T DPYD 3'UTR 0.28 TCGA-FW-A3R5-06 1 97547984 97547984 C T DPYD Missense_Mutation p.E937K 0.18 tolerated(0.5) benign(0.001) TCGA-FW-A3R5-06 1 97658696 97658696 C T DPYD Missense_Mutation p.G851R 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 1 9795569 9795569 G A CLSTN1 Silent p.F613F 0.21 TCGA-FW-A3R5-06 1 98039469 98039469 C T DPYD Missense_Mutation p.V396I 0.23 tolerated(0.09) benign(0.046) TCGA-FW-A3R5-06 1 98058822 98058822 G A DPYD Silent p.F360F 0.26 TCGA-FW-A3R5-06 1 981129 981129 C T AGRN Silent p.P851P 0.24 TCGA-FW-A3R5-06 1 98186452 98186452 G A DPYD Intron 0.16 TCGA-FW-A3R5-06 20 10032366 10032366 C T ANKEF1 Missense_Mutation p.H567Y 0.19 tolerated(0.51) benign(0.054) TCGA-FW-A3R5-06 20 10033879 10033879 C T ANKEF1 Missense_Mutation p.P664S 0.15 tolerated(0.27) benign(0.001) TCGA-FW-A3R5-06 20 10279981 10279981 G A SNAP25 Missense_Mutation p.G158E 0.21 deleterious(0) possibly_damaging(0.907) TCGA-FW-A3R5-06 20 10393290 10393290 G A MKKS Silent p.V291V 0.27 TCGA-FW-A3R5-06 20 10393713 10393713 G A MKKS Silent p.L150L 0.29 TCGA-FW-A3R5-06 20 10394185 10394185 G A MKKS 5'UTR 0.26 TCGA-FW-A3R5-06 20 10579331 10579331 T A SLX4IP Missense_Mutation p.F83I 0.12 deleterious(0.01) possibly_damaging(0.714) TCGA-FW-A3R5-06 20 10603304 10603304 C T SLX4IP Intron 0.09 TCGA-FW-A3R5-06 20 10603749 10603749 C T SLX4IP Nonsense_Mutation p.R317* 0.19 TCGA-FW-A3R5-06 20 1161580 1161580 C T TMEM74B Missense_Mutation p.R228K 0.33 tolerated(0.78) benign(0.269) TCGA-FW-A3R5-06 20 11903963 11903963 C T BTBD3 Silent p.F406F 0.27 TCGA-FW-A3R5-06 20 126352 126352 C T DEFB126 3'UTR 0.23 TCGA-FW-A3R5-06 20 12989803 12989803 C T SPTLC3 5'UTR 0.33 TCGA-FW-A3R5-06 20 12989844 12989844 C T SPTLC3 5'UTR 0.23 TCGA-FW-A3R5-06 20 12989982 12989982 G A SPTLC3 Missense_Mutation p.G23S 0.16 tolerated(0.27) benign(0) TCGA-FW-A3R5-06 20 13029625 13029625 C T SPTLC3 Silent p.L50L 0.26 TCGA-FW-A3R5-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.24 tolerated(0.25) probably_damaging(0.996) TCGA-FW-A3R5-06 20 13052931 13052931 G A SPTLC3 Missense_Mutation p.E111K 0.29 deleterious(0) benign(0.371) TCGA-FW-A3R5-06 20 13071780 13071780 G A SPTLC3 Silent p.L219L 0.10 TCGA-FW-A3R5-06 20 13098373 13098373 G T SPTLC3 Splice_Site p.X384_splice 0.15 TCGA-FW-A3R5-06 20 13279769 13279769 G A ISM1 Missense_Mutation p.G353E 0.12 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 13695737 13695737 G A ESF1 Silent p.F780F 0.27 TCGA-FW-A3R5-06 20 13830062 13830062 C T SEL1L2 3'UTR 0.32 TCGA-FW-A3R5-06 20 13976400 13976400 C T MACROD2 5'UTR 0.19 TCGA-FW-A3R5-06 20 14066290 14066290 C T MACROD2 Nonsense_Mutation p.Q63* 0.22 TCGA-FW-A3R5-06 20 14306614 14306614 G A FLRT3 Silent p.L513L 0.17 TCGA-FW-A3R5-06 20 14306775 14306775 C T FLRT3 Missense_Mutation p.E460K 0.27 tolerated(0.06) benign(0.06) TCGA-FW-A3R5-06 20 14307236 14307236 G A FLRT3 Missense_Mutation p.P306L 0.33 tolerated(0.18) probably_damaging(1) TCGA-FW-A3R5-06 20 14307789 14307789 C T FLRT3 Missense_Mutation p.D122N 0.29 tolerated(0.45) benign(0.14) TCGA-FW-A3R5-06 20 1456637 1456637 G A SIRPB2 3'UTR 0.50 TCGA-FW-A3R5-06 20 1456817 1456817 C T SIRPB2 Missense_Mutation p.E342K 0.24 tolerated_low_confidence(0.29) benign(0) TCGA-FW-A3R5-06 20 1459186 1459186 C T SIRPB2 Missense_Mutation p.G173E 0.26 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 20 1514951 1514951 C T SIRPD 3'UTR 0.22 TCGA-FW-A3R5-06 20 15480430 15480430 G A MACROD2 Missense_Mutation p.E195K 0.27 tolerated(0.07) probably_damaging(0.989) TCGA-FW-A3R5-06 20 1551584 1551584 C T SIRPB1 Silent p.V317V 0.11 TCGA-FW-A3R5-06 20 1552399 1552399 G A SIRPB1 Missense_Mutation p.R240C 0.29 deleterious(0.04) benign(0.142) TCGA-FW-A3R5-06 20 1552609 1552609 C T SIRPB1 Missense_Mutation p.E170K 0.23 tolerated(0.99) benign(0.004) TCGA-FW-A3R5-06 20 15843396 15843396 C T MACROD2 Missense_Mutation p.R218W 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 15843464 15843464 C T MACROD2 Silent p.F240F 0.20 TCGA-FW-A3R5-06 20 16021923 16021923 G A MACROD2 Missense_Mutation p.A411T 0.39 deleterious_low_confidence(0.03) benign(0.056) TCGA-FW-A3R5-06 20 1616936 1616936 C T SIRPG Missense_Mutation p.D216N 0.28 tolerated(0.18) benign(0.088) TCGA-FW-A3R5-06 20 16385458 16385458 C T KIF16B Missense_Mutation p.G595E 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 20 16730641 16730641 G A OTOR Missense_Mutation p.E117K 0.27 tolerated(0.23) possibly_damaging(0.713) TCGA-FW-A3R5-06 20 16731805 16731805 T C OTOR 3'UTR 0.17 TCGA-FW-A3R5-06 20 17434544 17434544 C T PCSK2 Missense_Mutation p.S348F 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 17445961 17445961 C T PCSK2 Intron 0.21 TCGA-FW-A3R5-06 20 17446091 17446091 C T PCSK2 Silent p.L441L 0.28 TCGA-FW-A3R5-06 20 17462284 17462284 G A PCSK2 Missense_Mutation p.G496R 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 17462538 17462538 G A PCSK2 Silent p.Q580Q 0.24 TCGA-FW-A3R5-06 20 17614116 17614116 G A RRBP1 Silent p.L434L 0.10 TCGA-FW-A3R5-06 20 17614117 17614117 G A RRBP1 Silent p.V433V 0.08 TCGA-FW-A3R5-06 20 17705763 17705763 C T BANF2 Silent p.L38L 0.17 TCGA-FW-A3R5-06 20 17934726 17934726 A G SNX5 Silent p.G101G 0.26 TCGA-FW-A3R5-06 20 18123478 18123478 C T CSRP2BP Silent p.S58S 0.27 TCGA-FW-A3R5-06 20 18165325 18165325 C T CSRP2BP Silent p.G688G 0.32 TCGA-FW-A3R5-06 20 18295752 18295752 C T ZNF133 Missense_Mutation p.P85L 0.19 tolerated(0.5) benign(0.056) TCGA-FW-A3R5-06 20 18448034 18448034 G A POLR3F 5'UTR 0.33 TCGA-FW-A3R5-06 20 18529400 18529400 C T SEC23B Missense_Mutation p.H631Y 0.10 tolerated(0.07) benign(0) TCGA-FW-A3R5-06 20 18794508 18794508 C T SCP2D1 Missense_Mutation p.P17S 0.18 tolerated(0.73) benign(0.004) TCGA-FW-A3R5-06 20 1903152 1903152 C T SIRPA Silent p.L316L 0.37 TCGA-FW-A3R5-06 20 19560691 19560691 C T SLC24A3 Silent p.F132F 0.37 TCGA-FW-A3R5-06 20 19566125 19566125 C T SLC24A3 Silent p.I183I 0.10 TCGA-FW-A3R5-06 20 1960904 1960904 G A PDYN 3'UTR 0.27 TCGA-FW-A3R5-06 20 1961116 1961116 G A PDYN Silent p.R206R 0.27 TCGA-FW-A3R5-06 20 1961398 1961398 G A PDYN Silent p.L112L 0.33 TCGA-FW-A3R5-06 20 19634720 19634720 C T SLC24A3 Silent p.S209S 0.20 TCGA-FW-A3R5-06 20 1963716 1963716 C T PDYN Silent p.G5G 0.15 TCGA-FW-A3R5-06 20 19654261 19654261 C T SLC24A3 Missense_Mutation p.L244F 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 19665909 19665909 G A SLC24A3 Missense_Mutation p.E410K 0.30 tolerated(0.43) benign(0.138) TCGA-FW-A3R5-06 20 19665948 19665948 G A SLC24A3 Missense_Mutation p.E423K 0.20 tolerated(0.41) benign(0.367) TCGA-FW-A3R5-06 20 19665966 19665966 G A SLC24A3 Missense_Mutation p.D429N 0.24 tolerated(0.17) benign(0.015) TCGA-FW-A3R5-06 20 19665972 19665972 G A SLC24A3 Missense_Mutation p.D431N 0.34 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 20 19701817 19701817 C T SLC24A3 3'UTR 0.28 TCGA-FW-A3R5-06 20 19981479 19981479 C T RIN2 Nonsense_Mutation p.R912* 0.15 TCGA-FW-A3R5-06 20 20054963 20054963 C T C20orf26 Silent p.F104F 0.26 TCGA-FW-A3R5-06 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.15 deleterious(0.03) benign(0.256) TCGA-FW-A3R5-06 20 20144725 20144725 G A C20orf26 Missense_Mutation p.G353E 0.19 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 20 20150048 20150048 C T C20orf26 Silent p.F443F 0.25 TCGA-FW-A3R5-06 20 20150060 20150060 C T C20orf26 Silent p.T447T 0.23 TCGA-FW-A3R5-06 20 20168604 20168604 G A C20orf26 Silent p.L472L 0.16 TCGA-FW-A3R5-06 20 20226810 20226810 C T C20orf26 Missense_Mutation p.P704S 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-FW-A3R5-06 20 20258009 20258009 G A C20orf26 Silent p.A901A 0.24 TCGA-FW-A3R5-06 20 20269523 20269523 G A C20orf26 Missense_Mutation p.E1023K 0.24 tolerated(0.26) possibly_damaging(0.49) TCGA-FW-A3R5-06 20 20341068 20341068 C T C20orf26 3'UTR 0.15 TCGA-FW-A3R5-06 20 20506951 20506951 G A RALGAPA2 Missense_Mutation p.S1213F 0.10 deleterious(0.01) benign(0.277) TCGA-FW-A3R5-06 20 20582410 20582410 C T RALGAPA2 Missense_Mutation p.E707K 0.26 tolerated(0.16) benign(0.02) TCGA-FW-A3R5-06 20 20585969 20585969 G A RALGAPA2 Missense_Mutation p.L630F 0.23 deleterious(0) possibly_damaging(0.677) TCGA-FW-A3R5-06 20 21143493 21143493 C T RP4-777D9.2 RNA 0.28 TCGA-FW-A3R5-06 20 21314251 21314251 C T XRN2 Missense_Mutation p.R310C 0.28 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 20 21376476 21376476 C T NKX2-4 3'UTR 0.18 TCGA-FW-A3R5-06 20 21492823 21492823 C T NKX2-2 Missense_Mutation p.R187Q 0.29 tolerated(0.08) possibly_damaging(0.519) TCGA-FW-A3R5-06 20 21492959 21492959 C T NKX2-2 Missense_Mutation p.E142K 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 21494397 21494397 G A NKX2-2 5'UTR 0.47 TCGA-FW-A3R5-06 20 21687043 21687043 C T PAX1 Intron 0.13 TCGA-FW-A3R5-06 20 21687424 21687424 C T PAX1 Missense_Mutation p.P212L 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 21689975 21689975 C T PAX1 Missense_Mutation p.P392L 0.49 deleterious_low_confidence(0.03) probably_damaging(0.943) TCGA-FW-A3R5-06 20 2290852 2290852 G A TGM3 Silent p.T70T 0.17 TCGA-FW-A3R5-06 20 2297749 2297749 G A TGM3 Silent p.G235G 0.22 TCGA-FW-A3R5-06 20 2297770 2297770 C T TGM3 Silent p.T242T 0.22 TCGA-FW-A3R5-06 20 2298005 2298005 C T TGM3 Missense_Mutation p.S286F 0.38 deleterious(0) possibly_damaging(0.896) TCGA-FW-A3R5-06 20 2298088 2298088 G A TGM3 Missense_Mutation p.D314N 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 20 23029230 23029230 G A THBD Silent p.G304G 0.38 TCGA-FW-A3R5-06 20 23065152 23065152 C T CD93 Missense_Mutation p.E560K 0.32 tolerated(0.44) benign(0.006) TCGA-FW-A3R5-06 20 23065576 23065576 G A CD93 Silent p.A418A 0.35 TCGA-FW-A3R5-06 20 23065577 23065577 G A CD93 Missense_Mutation p.A418V 0.34 tolerated(0.08) benign(0.091) TCGA-FW-A3R5-06 20 23066017 23066017 G T CD93 Nonsense_Mutation p.C271* 0.24 TCGA-FW-A3R5-06 20 23066116 23066116 G A CD93 Silent p.F238F 0.24 TCGA-FW-A3R5-06 20 23066136 23066136 C T CD93 Missense_Mutation p.E232K 0.27 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 20 2321209 2321209 C T TGM3 Silent p.S688S 0.24 TCGA-FW-A3R5-06 20 23334836 23334836 C T NXT1 Missense_Mutation p.S53L 0.33 tolerated(0.07) benign(0.145) TCGA-FW-A3R5-06 20 23476465 23476465 C T CST8 Intron 0.32 TCGA-FW-A3R5-06 20 23476501 23476501 C T CST8 Missense_Mutation p.P127S 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 23584143 23584143 G A CST9 3'UTR 0.23 TCGA-FW-A3R5-06 20 23666515 23666515 G A CST4 3'UTR 0.23 TCGA-FW-A3R5-06 20 23667824 23667824 C T CST4 Silent p.V81V 0.21 TCGA-FW-A3R5-06 20 23667831 23667831 C T CST4 Missense_Mutation p.G79E 0.19 deleterious(0.01) benign(0.015) TCGA-FW-A3R5-06 20 23728509 23728509 C T CST1 Missense_Mutation p.E124K 0.47 tolerated(0.39) probably_damaging(0.999) TCGA-FW-A3R5-06 20 23729755 23729755 C T CST1 Silent p.G80G 0.15 TCGA-FW-A3R5-06 20 23731354 23731354 G A CST1 Silent p.F50F 0.12 TCGA-FW-A3R5-06 20 23731413 23731413 G A CST1 Missense_Mutation p.P31S 0.09 tolerated(0.78) benign(0.001) TCGA-FW-A3R5-06 20 2375858 2375858 C T TGM6 Missense_Mutation p.A67V 0.22 tolerated(0.05) possibly_damaging(0.474) TCGA-FW-A3R5-06 20 2375859 2375859 C T TGM6 Silent p.A67A 0.22 TCGA-FW-A3R5-06 20 2377216 2377216 C T TGM6 Silent p.I163I 0.24 TCGA-FW-A3R5-06 20 23860381 23860381 G A CST5 5'UTR 0.21 TCGA-FW-A3R5-06 20 23965900 23965900 C T GGTLC1 Missense_Mutation p.A211T 0.25 tolerated(0.48) benign(0.133) TCGA-FW-A3R5-06 20 23966723 23966723 G A GGTLC1 Silent p.F98F 0.22 TCGA-FW-A3R5-06 20 2411133 2411133 G A TGM6 Missense_Mutation p.E574K 0.29 tolerated(0.75) benign(0.008) TCGA-FW-A3R5-06 20 2413244 2413244 G A TGM6 Silent p.P692P 0.24 TCGA-FW-A3R5-06 20 2442431 2442431 G T SNRPB Missense_Mutation p.P232T 0.26 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 20 2443865 2443865 G A SNRPB Silent p.T143T 0.25 TCGA-FW-A3R5-06 20 24523781 24523781 C T SYNDIG1 Silent p.I16I 0.32 TCGA-FW-A3R5-06 20 24523833 24523833 G A SYNDIG1 Missense_Mutation p.E34K 0.25 tolerated(0.09) probably_damaging(0.997) TCGA-FW-A3R5-06 20 24524132 24524132 C T SYNDIG1 Silent p.F133F 0.31 TCGA-FW-A3R5-06 20 2464818 2464818 G A ZNF343 Silent p.L263L 0.15 TCGA-FW-A3R5-06 20 24959427 24959427 G A APMAP Missense_Mutation p.P102S 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 25003624 25003624 G A ACSS1 Silent p.I304I 0.24 TCGA-FW-A3R5-06 20 25264767 25264767 C T PYGB Silent p.L550L 0.29 TCGA-FW-A3R5-06 20 25287509 25287509 G A ABHD12 Missense_Mutation p.P304S 0.12 tolerated(1) benign(0.012) TCGA-FW-A3R5-06 20 2539368 2539368 G A TMC2 Missense_Mutation p.E117K 0.14 tolerated(0.28) benign(0.002) TCGA-FW-A3R5-06 20 2542537 2542537 G A TMC2 Silent p.G145G 0.26 TCGA-FW-A3R5-06 20 2542543 2542543 C T TMC2 Silent p.S147S 0.28 TCGA-FW-A3R5-06 20 2542544 2542544 C T TMC2 Silent p.L148L 0.29 TCGA-FW-A3R5-06 20 25439060 25439060 G A NINL Missense_Mutation p.L1268F 0.16 tolerated(0.74) benign(0.4) TCGA-FW-A3R5-06 20 25457027 25457027 G A NINL Missense_Mutation p.S967L 0.15 tolerated(0.15) benign(0.001) TCGA-FW-A3R5-06 20 25470566 25470566 G A NINL Missense_Mutation p.S514L 0.32 deleterious(0) benign(0.432) TCGA-FW-A3R5-06 20 2573002 2573002 C T TMC2 Missense_Mutation p.P294L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 257964 257964 T C C20orf96 Missense_Mutation p.N209S 0.30 tolerated(0.69) benign(0.042) TCGA-FW-A3R5-06 20 2604948 2604948 G A TMC2 Missense_Mutation p.E738K 0.27 deleterious(0) possibly_damaging(0.493) TCGA-FW-A3R5-06 20 2795755 2795755 G A C20orf141 5'UTR 0.35 TCGA-FW-A3R5-06 20 2842728 2842728 C T VPS16 Silent p.A341A 0.41 TCGA-FW-A3R5-06 20 29632657 29632657 G A FRG1B Missense_Mutation p.E158K 0.03 tolerated(0.09) possibly_damaging(0.842) TCGA-FW-A3R5-06 20 29847325 29847325 G A DEFB115 Missense_Mutation p.E53K 0.28 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 20 29960755 29960755 C T DEFB118 Nonsense_Mutation p.R52* 0.32 TCGA-FW-A3R5-06 20 29976801 29976801 C T DEFB119 3'UTR 0.27 TCGA-FW-A3R5-06 20 3002768 3002768 C T PTPRA Silent p.D410D 0.25 TCGA-FW-A3R5-06 20 30064116 30064116 G A REM1 5'UTR 0.29 TCGA-FW-A3R5-06 20 30064117 30064117 G A REM1 5'UTR 0.29 TCGA-FW-A3R5-06 20 30072045 30072045 G A REM1 Missense_Mutation p.E237K 0.32 deleterious(0.01) possibly_damaging(0.482) TCGA-FW-A3R5-06 20 3016271 3016271 C T PTPRA Missense_Mutation p.S654F 0.26 tolerated(0.13) possibly_damaging(0.602) TCGA-FW-A3R5-06 20 30365431 30365431 C T TPX2 Missense_Mutation p.P291L 0.36 deleterious(0) benign(0.303) TCGA-FW-A3R5-06 20 30366743 30366743 G A TPX2 Missense_Mutation p.R337Q 0.30 deleterious(0.03) benign(0.017) TCGA-FW-A3R5-06 20 30371579 30371579 C A TPX2 Missense_Mutation p.P423H 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 20 30418653 30418653 G A MYLK2 Missense_Mutation p.G419E 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 20 30419503 30419503 T C MYLK2 Intron 0.10 TCGA-FW-A3R5-06 20 30432372 30432372 C T FOXS1 Missense_Mutation p.G325E 0.25 deleterious(0) possibly_damaging(0.554) TCGA-FW-A3R5-06 20 30432457 30432457 C T FOXS1 Missense_Mutation p.E297K 0.29 deleterious(0) benign(0.115) TCGA-FW-A3R5-06 20 30432527 30432527 G A FOXS1 Silent p.A273A 0.30 TCGA-FW-A3R5-06 20 30433000 30433000 G A FOXS1 Missense_Mutation p.R116W 0.25 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 20 30433001 30433001 G A FOXS1 Silent p.T115T 0.25 TCGA-FW-A3R5-06 20 30433256 30433256 G A FOXS1 Silent p.A30A 0.21 TCGA-FW-A3R5-06 20 30507699 30507699 C T TTLL9 Silent p.L179L 0.34 TCGA-FW-A3R5-06 20 30510853 30510853 G A TTLL9 Missense_Mutation p.G221R 0.27 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 20 30584330 30584330 C T XKR7 Silent p.L270L 0.29 TCGA-FW-A3R5-06 20 30584886 30584886 C T XKR7 Missense_Mutation p.R456C 0.33 deleterious(0.02) possibly_damaging(0.586) TCGA-FW-A3R5-06 20 30585176 30585176 G A XKR7 Silent p.E552E 0.18 TCGA-FW-A3R5-06 20 30617636 30617636 T A CCM2L 3'UTR 0.14 TCGA-FW-A3R5-06 20 30674574 30674574 G A HCK Missense_Mutation p.E327K 0.26 deleterious(0.03) probably_damaging(0.97) TCGA-FW-A3R5-06 20 30686936 30686936 C T HCK Missense_Mutation p.P459L 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 30732918 30732918 C T TM9SF4 Missense_Mutation p.S226L 0.31 tolerated(0.22) benign(0.001) TCGA-FW-A3R5-06 20 30784745 30784745 G A PLAGL2 Missense_Mutation p.S334F 0.08 tolerated(0.46) benign(0.146) TCGA-FW-A3R5-06 20 30784909 30784909 G A PLAGL2 Silent p.A279A 0.26 TCGA-FW-A3R5-06 20 30797941 30797941 C T POFUT1 Silent p.T64T 0.12 TCGA-FW-A3R5-06 20 30898307 30898307 C T KIF3B Missense_Mutation p.L243F 0.34 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 30898673 30898673 C T KIF3B Missense_Mutation p.L365F 0.10 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 20 30915444 30915444 C T KIF3B Missense_Mutation p.R650C 0.21 deleterious(0.03) benign(0.136) TCGA-FW-A3R5-06 20 3128799 3128799 G A FASTKD5 Silent p.I306I 0.27 TCGA-FW-A3R5-06 20 3129117 3129117 G A FASTKD5 Silent p.L200L 0.19 TCGA-FW-A3R5-06 20 31374318 31374318 G T DNMT3B Missense_Mutation p.R106L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 20 31374319 31374319 A T DNMT3B Silent p.R106R 0.26 TCGA-FW-A3R5-06 20 31386389 31386389 C T DNMT3B Silent p.R538R 0.37 TCGA-FW-A3R5-06 20 31395845 31395845 C T DNMT3B 3'UTR 0.42 TCGA-FW-A3R5-06 20 31577457 31577457 G A SUN5 Silent p.I194I 0.22 TCGA-FW-A3R5-06 20 31577468 31577468 C T SUN5 Missense_Mutation p.G191R 0.18 tolerated(0.08) probably_damaging(1) TCGA-FW-A3R5-06 20 31585462 31585462 C T SUN5 Silent p.S124S 0.35 TCGA-FW-A3R5-06 20 31606074 31606074 C T BPIFB2 Missense_Mutation p.P196L 0.19 deleterious(0.01) possibly_damaging(0.804) TCGA-FW-A3R5-06 20 31606075 31606075 C T BPIFB2 Silent p.P196P 0.19 TCGA-FW-A3R5-06 20 31606601 31606601 C T BPIFB2 Silent p.A276A 0.18 TCGA-FW-A3R5-06 20 31608171 31608171 T G BPIFB2 Missense_Mutation p.V373G 0.22 tolerated(0.12) benign(0.109) TCGA-FW-A3R5-06 20 31611188 31611188 G A BPIFB2 Silent p.%3D 0.14 TCGA-FW-A3R5-06 20 31652321 31652321 C T BPIFB3 Silent p.L237L 0.27 TCGA-FW-A3R5-06 20 31656616 31656616 G A BPIFB3 Missense_Mutation p.G329E 0.22 tolerated(0.89) probably_damaging(0.965) TCGA-FW-A3R5-06 20 31671187 31671187 C T BPIFB4 Missense_Mutation p.P62S 0.23 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-FW-A3R5-06 20 31671680 31671680 G A BPIFB4 Missense_Mutation p.G226E 0.12 deleterious(0) possibly_damaging(0.772) TCGA-FW-A3R5-06 20 31672723 31672723 C T BPIFB4 Missense_Mutation p.P235S 0.50 deleterious(0.01) possibly_damaging(0.547) TCGA-FW-A3R5-06 20 31682918 31682918 C T BPIFB4 Missense_Mutation p.P453S 0.28 tolerated(0.09) benign(0.171) TCGA-FW-A3R5-06 20 31699304 31699304 C T BPIFB4 3'UTR 0.15 TCGA-FW-A3R5-06 20 31761975 31761975 G A BPIFA2 Silent p.A131A 0.26 TCGA-FW-A3R5-06 20 31763243 31763243 A G BPIFA2 Silent p.K147K 0.28 TCGA-FW-A3R5-06 20 31825928 31825928 C T BPIFA1 Silent p.I76I 0.26 TCGA-FW-A3R5-06 20 31878790 31878790 C T BPIFB1 Silent p.F131F 0.15 TCGA-FW-A3R5-06 20 31889036 31889036 C T BPIFB1 Intron 0.27 TCGA-FW-A3R5-06 20 31967359 31967359 G A CDK5RAP1 Missense_Mutation p.R339C 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 3202495 3202495 C T ITPA Silent p.I140I 0.37 TCGA-FW-A3R5-06 20 3211823 3211823 G A SLC4A11 Silent p.F381F 0.22 TCGA-FW-A3R5-06 20 3212029 3212029 G A SLC4A11 Missense_Mutation p.P342S 0.31 tolerated(0.74) benign(0.002) TCGA-FW-A3R5-06 20 32232418 32232418 C T CBFA2T2 Missense_Mutation p.A594V 0.16 deleterious_low_confidence(0.01) benign(0.434) TCGA-FW-A3R5-06 20 32258570 32258570 G A NECAB3 Silent p.F61F 0.24 TCGA-FW-A3R5-06 20 32264549 32264549 G A E2F1 Silent p.L435L 0.16 TCGA-FW-A3R5-06 20 32264687 32264687 C T E2F1 Missense_Mutation p.E389K 0.30 deleterious(0.03) benign(0.23) TCGA-FW-A3R5-06 20 3233105 3233105 G A C20orf194 3'UTR 0.29 TCGA-FW-A3R5-06 20 32341039 32341039 C T ZNF341 Missense_Mutation p.P184L 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 20 32371624 32371624 C T ZNF341 Silent p.F595F 0.15 TCGA-FW-A3R5-06 20 32378891 32378891 C T ZNF341 Silent p.F704F 0.33 TCGA-FW-A3R5-06 20 32379054 32379054 C T ZNF341 Missense_Mutation p.P759S 0.33 tolerated(0.36) benign(0.003) TCGA-FW-A3R5-06 20 32879235 32879235 G A AHCY Missense_Mutation p.S183F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-FW-A3R5-06 20 33027990 33027990 C T ITCH Missense_Mutation p.S278F 0.12 deleterious(0.04) benign(0.211) TCGA-FW-A3R5-06 20 33067568 33067568 C T ITCH Missense_Mutation p.R639C 0.08 tolerated(0.28) probably_damaging(0.977) TCGA-FW-A3R5-06 20 3312936 3312936 G A C20orf194 Missense_Mutation p.P352S 0.36 deleterious(0.01) probably_damaging(0.925) TCGA-FW-A3R5-06 20 33162998 33162998 G A PIGU Silent p.L368L 0.11 TCGA-FW-A3R5-06 20 33342596 33342596 G A NCOA6 Missense_Mutation p.S535L 0.10 possibly_damaging(0.801) TCGA-FW-A3R5-06 20 33345226 33345226 G A NCOA6 Missense_Mutation p.S442F 0.29 possibly_damaging(0.877) TCGA-FW-A3R5-06 20 33345431 33345431 G A NCOA6 Missense_Mutation p.P374S 0.37 probably_damaging(0.998) TCGA-FW-A3R5-06 20 33433076 33433076 G A GGT7 3'UTR 0.27 TCGA-FW-A3R5-06 20 33433180 33433180 G A GGT7 Missense_Mutation p.A647V 0.35 tolerated(0.06) benign(0.248) TCGA-FW-A3R5-06 20 33565900 33565900 G A MYH7B Splice_Site p.X73_splice 0.23 TCGA-FW-A3R5-06 20 33572868 33572868 G A MYH7B Splice_Site p.X290_splice 0.22 TCGA-FW-A3R5-06 20 33577900 33577900 G A MYH7B Silent p.Q659Q 0.35 TCGA-FW-A3R5-06 20 33578885 33578885 G A MYH7B Missense_Mutation p.G757E 0.26 probably_damaging(0.999) TCGA-FW-A3R5-06 20 33584242 33584242 G A MYH7B Missense_Mutation p.A1055T 0.51 benign(0.034) TCGA-FW-A3R5-06 20 33586667 33586667 G A MYH7B Missense_Mutation p.S1422N 0.19 benign(0.002) TCGA-FW-A3R5-06 20 33586675 33586675 G A MYH7B Missense_Mutation p.E1425K 0.25 possibly_damaging(0.813) TCGA-FW-A3R5-06 20 33588192 33588192 G A MYH7B Silent p.E1668E 0.31 TCGA-FW-A3R5-06 20 33589863 33589863 G A MYH7B Missense_Mutation p.R1972Q 0.25 benign(0.065) TCGA-FW-A3R5-06 20 33764245 33764245 G A PROCR Silent p.T199T 0.28 TCGA-FW-A3R5-06 20 33842389 33842389 G A MMP24 Missense_Mutation p.E217K 0.21 tolerated(0.09) benign(0.412) TCGA-FW-A3R5-06 20 33851599 33851599 G A MMP24 Missense_Mutation p.D275N 0.50 tolerated(0.25) probably_damaging(0.988) TCGA-FW-A3R5-06 20 33875446 33875446 G A FAM83C Missense_Mutation p.S379L 0.29 deleterious_low_confidence(0.02) benign(0.015) TCGA-FW-A3R5-06 20 33879667 33879667 C T FAM83C Silent p.V147V 0.30 TCGA-FW-A3R5-06 20 34021740 34021740 C T GDF5 Silent p.E491E 0.32 TCGA-FW-A3R5-06 20 34022007 34022007 C T GDF5 Silent p.R402R 0.24 TCGA-FW-A3R5-06 20 34025231 34025231 C T GDF5 Missense_Mutation p.E160K 0.21 tolerated(0.36) probably_damaging(0.973) TCGA-FW-A3R5-06 20 34025289 34025289 G A GDF5 Silent p.V140V 0.31 TCGA-FW-A3R5-06 20 34061368 34061368 C T CEP250 Missense_Mutation p.S460F 0.22 possibly_damaging(0.908) TCGA-FW-A3R5-06 20 34096010 34096010 C T CEP250 Silent p.T2299T 0.33 TCGA-FW-A3R5-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.30 TCGA-FW-A3R5-06 20 34206880 34206880 G A SPAG4 Silent p.E251E 0.25 TCGA-FW-A3R5-06 20 34215285 34215285 G A CPNE1 Missense_Mutation p.L390F 0.26 tolerated(0.12) possibly_damaging(0.766) TCGA-FW-A3R5-06 20 34241243 34241243 G A RBM12 Missense_Mutation p.P668S 0.34 tolerated_low_confidence(0.09) possibly_damaging(0.487) TCGA-FW-A3R5-06 20 34241738 34241738 G A RBM12 Missense_Mutation p.H503Y 0.25 tolerated(0.21) probably_damaging(0.996) TCGA-FW-A3R5-06 20 34257603 34257603 G A NFS1 Missense_Mutation p.L439F 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 34278402 34278402 G A NFS1 Missense_Mutation p.S165L 0.32 tolerated(0.45) benign(0.063) TCGA-FW-A3R5-06 20 34312576 34312576 G A RBM39 Silent p.F201F 0.33 TCGA-FW-A3R5-06 20 34487474 34487474 C T PHF20 Missense_Mutation p.P489S 0.24 tolerated(0.15) benign(0.002) TCGA-FW-A3R5-06 20 34502056 34502056 C T PHF20 Missense_Mutation p.H588Y 0.32 deleterious(0.03) benign(0.007) TCGA-FW-A3R5-06 20 34528852 34528852 G A PHF20 Missense_Mutation p.G927S 0.32 tolerated(0.15) benign(0.002) TCGA-FW-A3R5-06 20 34571961 34571961 C T CNBD2 Silent p.F155F 0.26 TCGA-FW-A3R5-06 20 34596343 34596343 G A CNBD2 Silent p.R365R 0.14 TCGA-FW-A3R5-06 20 34611583 34611583 G A CNBD2 Missense_Mutation p.M439I 0.23 tolerated(0.13) benign(0.005) TCGA-FW-A3R5-06 20 34770216 34770216 C T EPB41L1 Silent p.F171F 0.29 TCGA-FW-A3R5-06 20 34773187 34773187 G A EPB41L1 Missense_Mutation p.E239K 0.26 deleterious(0) possibly_damaging(0.819) TCGA-FW-A3R5-06 20 34775646 34775646 G A EPB41L1 Silent p.K278K 0.24 TCGA-FW-A3R5-06 20 34778553 34778553 C T EPB41L1 Silent p.S378S 0.29 TCGA-FW-A3R5-06 20 34782179 34782179 G A EPB41L1 Missense_Mutation p.G449E 0.24 tolerated(0.36) benign(0.004) TCGA-FW-A3R5-06 20 34810239 34810239 C T EPB41L1 Missense_Mutation p.P854S 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 35060090 35060090 G A DLGAP4 5'UTR 0.38 TCGA-FW-A3R5-06 20 35177519 35177519 C T MYL9 Missense_Mutation p.T129I 0.27 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 20 3520891 3520891 C T ATRN Missense_Mutation p.R173C 0.19 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 20 35219337 35219337 C T TGIF2 Missense_Mutation p.R73W 0.10 tolerated(0.05) probably_damaging(1) TCGA-FW-A3R5-06 20 35240525 35240525 C T C20orf24 Missense_Mutation p.R111C 0.09 deleterious_low_confidence(0.05) benign(0) TCGA-FW-A3R5-06 20 35390870 35390870 G A DSN1 Missense_Mutation p.S195L 0.25 tolerated(0.07) possibly_damaging(0.828) TCGA-FW-A3R5-06 20 35504607 35504607 G A TLDC2 Silent p.R10R 0.09 TCGA-FW-A3R5-06 20 35506332 35506332 G A TLDC2 Missense_Mutation p.E22K 0.11 tolerated(0.2) benign(0.01) TCGA-FW-A3R5-06 20 35506399 35506399 C T TLDC2 Missense_Mutation p.P44L 0.21 tolerated(0.29) benign(0.038) TCGA-FW-A3R5-06 20 35507460 35507460 C T TLDC2 Missense_Mutation p.P69L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 35563557 35563557 G A SAMHD1 Silent p.L128L 0.32 TCGA-FW-A3R5-06 20 35752159 35752159 C T MROH8 Missense_Mutation p.R637Q 0.15 tolerated(0.23) benign(0.049) TCGA-FW-A3R5-06 20 35802490 35802490 G A MROH8 Missense_Mutation p.P123L 0.22 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-FW-A3R5-06 20 35802491 35802491 G A MROH8 Missense_Mutation p.P123S 0.24 deleterious_low_confidence(0) benign(0.27) TCGA-FW-A3R5-06 20 35860728 35860728 C T RPN2 Silent p.P537P 0.17 TCGA-FW-A3R5-06 20 35885233 35885233 G A GHRH Silent p.S20S 0.36 TCGA-FW-A3R5-06 20 36030030 36030030 G A SRC Silent p.G355G 0.20 TCGA-FW-A3R5-06 20 36151162 36151162 G A NNAT 3'UTR 0.35 TCGA-FW-A3R5-06 20 36361338 36361338 C T CTNNBL1 Missense_Mutation p.R30W 0.23 deleterious(0.01) benign(0.405) TCGA-FW-A3R5-06 20 36468525 36468525 C T CTNNBL1 Missense_Mutation p.A412V 0.27 deleterious(0.03) possibly_damaging(0.663) TCGA-FW-A3R5-06 20 36488689 36488689 C T CTNNBL1 Missense_Mutation p.H516Y 0.31 tolerated(0.47) benign(0.059) TCGA-FW-A3R5-06 20 3649488 3649488 C T ADAM33 3'UTR 0.29 TCGA-FW-A3R5-06 20 36500359 36500359 C T CTNNBL1 Missense_Mutation p.P546S 0.19 tolerated(0.67) benign(0.013) TCGA-FW-A3R5-06 20 3654066 3654066 G A ADAM33 Silent p.D356D 0.50 TCGA-FW-A3R5-06 20 3655674 3655674 C T ADAM33 Silent p.T111T 0.15 TCGA-FW-A3R5-06 20 36572431 36572431 C T VSTM2L Missense_Mutation p.R131W 0.10 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 20 36641484 36641484 G A TTI1 Silent p.F245F 0.30 TCGA-FW-A3R5-06 20 36642158 36642158 G A TTI1 Missense_Mutation p.L21F 0.13 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 36676878 36676878 C T RPRD1B Missense_Mutation p.P137L 0.18 tolerated(0.25) benign(0.003) TCGA-FW-A3R5-06 20 3670728 3670728 G A SIGLEC1 Missense_Mutation p.S1592F 0.27 deleterious(0.02) probably_damaging(0.928) TCGA-FW-A3R5-06 20 36718365 36718365 C T RPRD1B 3'UTR 0.31 TCGA-FW-A3R5-06 20 3673312 3673312 G A SIGLEC1 Missense_Mutation p.H1296Y 0.28 tolerated(0.06) benign(0.139) TCGA-FW-A3R5-06 20 3674315 3674315 G A SIGLEC1 Missense_Mutation p.T1096I 0.25 tolerated(0.11) benign(0.03) TCGA-FW-A3R5-06 20 3675093 3675093 G A SIGLEC1 Missense_Mutation p.P1011S 0.24 deleterious(0) probably_damaging(0.956) TCGA-FW-A3R5-06 20 3675457 3675457 C T SIGLEC1 Missense_Mutation p.D933N 0.29 tolerated(0.61) benign(0.162) TCGA-FW-A3R5-06 20 3675458 3675458 C T SIGLEC1 Silent p.R932R 0.28 TCGA-FW-A3R5-06 20 3677394 3677394 C T SIGLEC1 Missense_Mutation p.G841D 0.15 deleterious(0.01) possibly_damaging(0.833) TCGA-FW-A3R5-06 20 3677847 3677847 G A SIGLEC1 Silent p.P755P 0.30 TCGA-FW-A3R5-06 20 36784456 36784456 G A TGM2 Missense_Mutation p.R76C 0.18 tolerated(0.14) benign(0.007) TCGA-FW-A3R5-06 20 3678588 3678588 G A SIGLEC1 Missense_Mutation p.S660F 0.30 tolerated(0.18) benign(0.03) TCGA-FW-A3R5-06 20 36789956 36789956 C T TGM2 Missense_Mutation p.R19Q 0.30 tolerated(0.17) benign(0.004) TCGA-FW-A3R5-06 20 3679990 3679990 C T SIGLEC1 Missense_Mutation p.G549R 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 36845839 36845839 G A KIAA1755 Missense_Mutation p.A906V 0.30 deleterious(0.02) possibly_damaging(0.52) TCGA-FW-A3R5-06 20 36848065 36848065 G A KIAA1755 Silent p.V841V 0.23 TCGA-FW-A3R5-06 20 3686422 3686422 C T SIGLEC1 Silent p.R225R 0.28 TCGA-FW-A3R5-06 20 3686423 3686423 C T SIGLEC1 Missense_Mutation p.R225K 0.28 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 20 36869693 36869693 G A KIAA1755 Silent p.G280G 0.31 TCGA-FW-A3R5-06 20 36870251 36870251 G A KIAA1755 Silent p.P94P 0.24 TCGA-FW-A3R5-06 20 3687253 3687253 C T SIGLEC1 Silent p.E50E 0.20 TCGA-FW-A3R5-06 20 36940286 36940286 C T BPI Nonsense_Mutation p.Q187* 0.10 TCGA-FW-A3R5-06 20 36940319 36940319 C T BPI Nonsense_Mutation p.R198* 0.11 TCGA-FW-A3R5-06 20 36952410 36952410 G A BPI Missense_Mutation p.E303K 0.19 tolerated(0.39) benign(0.011) TCGA-FW-A3R5-06 20 36954816 36954816 C T BPI Silent p.S385S 0.27 TCGA-FW-A3R5-06 20 36965739 36965739 G A BPI 3'UTR 0.31 TCGA-FW-A3R5-06 20 36979297 36979297 C T LBP Missense_Mutation p.S108F 0.31 deleterious(0.01) probably_damaging(0.936) TCGA-FW-A3R5-06 20 36993269 36993269 C T LBP Missense_Mutation p.L262F 0.30 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 20 37053851 37053851 G A SNORA71B RNA 0.31 TCGA-FW-A3R5-06 20 37146532 37146532 C T RALGAPB Missense_Mutation p.R436W 0.37 tolerated(0.07) possibly_damaging(0.471) TCGA-FW-A3R5-06 20 37353567 37353567 G A SLC32A1 Missense_Mutation p.G67E 0.15 tolerated(1) benign(0) TCGA-FW-A3R5-06 20 37356289 37356289 C T SLC32A1 Silent p.A195A 0.27 TCGA-FW-A3R5-06 20 37356729 37356729 G A SLC32A1 Nonsense_Mutation p.W342* 0.23 TCGA-FW-A3R5-06 20 37400247 37400247 C T ACTR5 Missense_Mutation p.R538C 0.30 deleterious(0.03) benign(0.212) TCGA-FW-A3R5-06 20 37536457 37536457 G A PPP1R16B Missense_Mutation p.E303K 0.35 tolerated(0.26) probably_damaging(0.92) TCGA-FW-A3R5-06 20 37546855 37546855 G A PPP1R16B Missense_Mutation p.R417Q 0.20 tolerated(0.74) benign(0.001) TCGA-FW-A3R5-06 20 377122 377122 C T TRIB3 Missense_Mutation p.R289C 0.29 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 20 39729862 39729862 C T TOP1 Missense_Mutation p.P393S 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 39792036 39792036 C T PLCG1 Missense_Mutation p.R270C 0.28 deleterious(0.05) possibly_damaging(0.631) TCGA-FW-A3R5-06 20 39793585 39793585 C T PLCG1 Silent p.I410I 0.35 TCGA-FW-A3R5-06 20 39978721 39978721 C T LPIN3 Silent p.S262S 0.21 TCGA-FW-A3R5-06 20 39986644 39986644 C T LPIN3 Missense_Mutation p.S721F 0.19 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 20 39987429 39987429 C T LPIN3 Silent p.L827L 0.08 TCGA-FW-A3R5-06 20 39990859 39990859 C T EMILIN3 Silent p.R450R 0.36 TCGA-FW-A3R5-06 20 39991461 39991461 C T EMILIN3 Missense_Mutation p.E250K 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-FW-A3R5-06 20 40033223 40033223 G A CHD6 3'UTR 0.29 TCGA-FW-A3R5-06 20 40033909 40033909 G A CHD6 Missense_Mutation p.P2491L 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 20 40044087 40044087 G A CHD6 Silent p.S2226S 0.39 TCGA-FW-A3R5-06 20 40113039 40113039 G A CHD6 Missense_Mutation p.T737I 0.27 deleterious(0.04) probably_damaging(0.99) TCGA-FW-A3R5-06 20 40709401 40709401 C T PTPRT 3'UTR 0.52 TCGA-FW-A3R5-06 20 40710658 40710658 C T PTPRT Splice_Site p.X1379_splice 0.20 TCGA-FW-A3R5-06 20 40713344 40713344 C T PTPRT Missense_Mutation p.G1372R 0.20 deleterious(0) probably_damaging(0.935) TCGA-FW-A3R5-06 20 40739002 40739002 C T PTPRT Silent p.P1075P 0.20 TCGA-FW-A3R5-06 20 40743889 40743889 C T PTPRT Missense_Mutation p.E1017K 0.27 tolerated(0.53) probably_damaging(0.98) TCGA-FW-A3R5-06 20 40790001 40790001 C T PTPRT Silent p.E891E 0.33 TCGA-FW-A3R5-06 20 40790031 40790031 C T PTPRT Missense_Mutation p.M881I 0.29 deleterious(0) benign(0.109) TCGA-FW-A3R5-06 20 40944474 40944474 G A PTPRT Silent p.T676T 0.36 TCGA-FW-A3R5-06 20 40979312 40979312 G A PTPRT Silent p.I607I 0.30 TCGA-FW-A3R5-06 20 40980844 40980844 C T PTPRT Missense_Mutation p.E548K 0.09 tolerated(0.09) benign(0.44) TCGA-FW-A3R5-06 20 40980866 40980866 C T PTPRT Silent p.G540G 0.24 TCGA-FW-A3R5-06 20 40980903 40980903 G A PTPRT Missense_Mutation p.S528L 0.37 deleterious(0) possibly_damaging(0.471) TCGA-FW-A3R5-06 20 41100936 41100936 C T PTPRT Missense_Mutation p.E474K 0.14 tolerated(0.71) benign(0.335) TCGA-FW-A3R5-06 20 41306651 41306651 C T PTPRT Silent p.E336E 0.30 TCGA-FW-A3R5-06 20 41306689 41306689 C T PTPRT Missense_Mutation p.E324K 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 20 41306738 41306738 G A PTPRT Silent p.I307I 0.25 TCGA-FW-A3R5-06 20 41400142 41400142 C T PTPRT Missense_Mutation p.G206E 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 20 4162831 4162831 C T SMOX Silent p.I235I 0.39 TCGA-FW-A3R5-06 20 4168089 4168089 C T SMOX 3'UTR 0.24 TCGA-FW-A3R5-06 20 42088473 42088473 C T SRSF6 Missense_Mutation p.R107C 0.24 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 20 42161469 42161469 G A L3MBTL1 Missense_Mutation p.M425I 0.08 deleterious(0.04) benign(0.205) TCGA-FW-A3R5-06 20 42162048 42162048 C T L3MBTL1 Silent p.T479T 0.17 TCGA-FW-A3R5-06 20 42168793 42168793 C T L3MBTL1 Missense_Mutation p.L704F 0.20 tolerated(0.09) possibly_damaging(0.755) TCGA-FW-A3R5-06 20 42195138 42195138 G A SGK2 Missense_Mutation p.M61I 0.22 tolerated(0.11) benign(0.008) TCGA-FW-A3R5-06 20 42213755 42213755 G A SGK2 3'UTR 0.33 TCGA-FW-A3R5-06 20 4228965 4228965 C T ADRA1D Missense_Mutation p.A214T 0.40 tolerated(0.43) benign(0.18) TCGA-FW-A3R5-06 20 4229251 4229251 G A ADRA1D Silent p.I118I 0.16 TCGA-FW-A3R5-06 20 42331169 42331169 C T MYBL2 Missense_Mutation p.P331S 0.08 tolerated(0.37) probably_damaging(0.91) TCGA-FW-A3R5-06 20 42341730 42341730 C T MYBL2 Missense_Mutation p.P603L 0.39 deleterious(0.02) probably_damaging(0.969) TCGA-FW-A3R5-06 20 42344708 42344708 G A MYBL2 Missense_Mutation p.R695Q 0.21 deleterious(0.01) benign(0.086) TCGA-FW-A3R5-06 20 42635205 42635205 G A TOX2 Missense_Mutation p.E62K 0.29 tolerated(1) benign(0.225) TCGA-FW-A3R5-06 20 42680109 42680109 C T TOX2 Missense_Mutation p.S192L 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-FW-A3R5-06 20 42683086 42683086 C T TOX2 Nonsense_Mutation p.Q267* 0.12 TCGA-FW-A3R5-06 20 42683154 42683154 G A TOX2 Silent p.E289E 0.27 TCGA-FW-A3R5-06 20 42693479 42693479 G A TOX2 Silent p.R314R 0.24 TCGA-FW-A3R5-06 20 42693486 42693486 C T TOX2 Missense_Mutation p.L317F 0.29 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 20 42695407 42695407 G A TOX2 Missense_Mutation p.G465E 0.28 deleterious(0) benign(0.421) TCGA-FW-A3R5-06 20 42695454 42695454 G A TOX2 Missense_Mutation p.D481N 0.26 tolerated(0.28) benign(0.299) TCGA-FW-A3R5-06 20 42697375 42697375 G A TOX2 3'UTR 0.21 TCGA-FW-A3R5-06 20 42697399 42697399 G A TOX2 3'UTR 0.21 TCGA-FW-A3R5-06 20 42747230 42747230 C T JPH2 Silent p.A401A 0.18 TCGA-FW-A3R5-06 20 42747236 42747236 C T JPH2 Silent p.E399E 0.29 TCGA-FW-A3R5-06 20 42788463 42788463 G A JPH2 Silent p.L322L 0.34 TCGA-FW-A3R5-06 20 42788484 42788484 C T JPH2 Missense_Mutation p.E315K 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 42788508 42788508 C T JPH2 Missense_Mutation p.E307K 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 20 42815420 42815420 C T JPH2 5'UTR 0.20 TCGA-FW-A3R5-06 20 42825913 42825913 G A OSER1 Silent p.L220L 0.12 TCGA-FW-A3R5-06 20 428611 428611 G A TBC1D20 Missense_Mutation p.L60F 0.24 deleterious(0.05) probably_damaging(0.918) TCGA-FW-A3R5-06 20 42969866 42969866 G A R3HDML Missense_Mutation p.E98K 0.29 tolerated(0.17) benign(0.032) TCGA-FW-A3R5-06 20 43048468 43048468 G A HNF4A Missense_Mutation p.D282N 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-FW-A3R5-06 20 43052675 43052675 G A HNF4A Missense_Mutation p.D304N 0.26 tolerated(0.17) possibly_damaging(0.865) TCGA-FW-A3R5-06 20 43052897 43052897 C T HNF4A Intron 0.31 TCGA-FW-A3R5-06 20 43056984 43056984 G A HNF4A Missense_Mutation p.S380N 0.24 tolerated(0.6) benign(0.001) TCGA-FW-A3R5-06 20 43058358 43058358 G A HNF4A 3'UTR 0.37 TCGA-FW-A3R5-06 20 43142617 43142617 G A SERINC3 Missense_Mutation p.S35F 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 20 43257798 43257798 G A ADA Silent p.I36I 0.33 TCGA-FW-A3R5-06 20 43355771 43355771 C T WISP2 Silent p.V192V 0.36 TCGA-FW-A3R5-06 20 43355922 43355922 C T WISP2 Missense_Mutation p.R243C 0.21 deleterious(0) possibly_damaging(0.549) TCGA-FW-A3R5-06 20 43378995 43378995 C T KCNK15 Missense_Mutation p.T170I 0.41 tolerated(0.19) possibly_damaging(0.79) TCGA-FW-A3R5-06 20 43379197 43379197 C T KCNK15 Silent p.A237A 0.14 TCGA-FW-A3R5-06 20 43384762 43384762 C T RIMS4 3'UTR 0.23 TCGA-FW-A3R5-06 20 43384806 43384806 C T RIMS4 Missense_Mutation p.S261N 0.32 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FW-A3R5-06 20 43385610 43385610 G A RIMS4 Missense_Mutation p.R175C 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FW-A3R5-06 20 43530342 43530342 C T YWHAB Silent p.A56A 0.30 TCGA-FW-A3R5-06 20 43535175 43535175 C T YWHAB 3'UTR 0.24 TCGA-FW-A3R5-06 20 43541387 43541387 C T PABPC1L Missense_Mutation p.R94C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-FW-A3R5-06 20 43559289 43559289 C T PABPC1L Silent p.S387S 0.15 TCGA-FW-A3R5-06 20 43610472 43610472 C T STK4 Missense_Mutation p.P83L 0.23 deleterious(0.02) benign(0.2) TCGA-FW-A3R5-06 20 43610524 43610524 C T STK4 Silent p.I100I 0.39 TCGA-FW-A3R5-06 20 43623872 43623872 C T STK4 Missense_Mutation p.P223S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 43723679 43723679 C T KCNS1 Silent p.E471E 0.33 TCGA-FW-A3R5-06 20 43739057 43739057 G A WFDC5 Silent p.C117C 0.23 TCGA-FW-A3R5-06 20 43752408 43752408 C T WFDC12 3'UTR 0.22 TCGA-FW-A3R5-06 20 43803611 43803611 G A PI3 Silent p.G16G 0.24 TCGA-FW-A3R5-06 20 43835641 43835641 G A SEMG1 5'UTR 0.22 TCGA-FW-A3R5-06 20 43836363 43836363 C T SEMG1 Missense_Mutation p.P142L 0.27 tolerated(0.16) probably_damaging(1) TCGA-FW-A3R5-06 20 43881005 43881005 G A SLPI 3'UTR 0.24 TCGA-FW-A3R5-06 20 43881651 43881651 G A SLPI Missense_Mutation p.P129L 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 43926898 43926898 G A MATN4 Silent p.A446A 0.36 TCGA-FW-A3R5-06 20 43933018 43933018 C T MATN4 Missense_Mutation p.G165S 0.19 probably_damaging(0.996) TCGA-FW-A3R5-06 20 43933065 43933065 C T MATN4 Missense_Mutation p.R149Q 0.20 probably_damaging(0.988) TCGA-FW-A3R5-06 20 43956011 43956011 G A SDC4 Silent p.L164L 0.19 TCGA-FW-A3R5-06 20 43959189 43959189 G A SDC4 Missense_Mutation p.H88Y 0.33 tolerated(0.47) benign(0.02) TCGA-FW-A3R5-06 20 43995655 43995655 C T SYS1 Missense_Mutation p.A124V 0.18 tolerated(0.76) benign(0.004) TCGA-FW-A3R5-06 20 44004191 44004191 C T TP53TG5 Missense_Mutation p.E86K 0.26 tolerated(0.2) possibly_damaging(0.472) TCGA-FW-A3R5-06 20 44050117 44050117 C T PIGT Silent p.H376H 0.14 TCGA-FW-A3R5-06 20 44108342 44108342 G A WFDC2 Intron 0.36 TCGA-FW-A3R5-06 20 44108722 44108722 C T WFDC2 Missense_Mutation p.P122S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 44108734 44108734 G A WFDC2 Intron 0.20 TCGA-FW-A3R5-06 20 44174367 44174367 C T EPPIN-WFDC6 Missense_Mutation p.R45K 0.34 tolerated(0.35) possibly_damaging(0.627) TCGA-FW-A3R5-06 20 44184463 44184463 C T WFDC8 Missense_Mutation p.A108T 0.25 tolerated(0.57) benign(0.05) TCGA-FW-A3R5-06 20 44278037 44278037 C T WFDC11 Silent p.R34R 0.21 TCGA-FW-A3R5-06 20 44279267 44279267 G A WFDC11 5'UTR 0.20 TCGA-FW-A3R5-06 20 44313400 44313400 C T WFDC10B 3'UTR 0.21 TCGA-FW-A3R5-06 20 44313418 44313418 C T WFDC10B 3'UTR 0.19 TCGA-FW-A3R5-06 20 44333610 44333610 C T WFDC10B Silent p.R7R 0.20 TCGA-FW-A3R5-06 20 44333618 44333618 C T WFDC10B Missense_Mutation p.E5K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 20 44352646 44352646 C T SPINT4 Silent p.F81F 0.17 TCGA-FW-A3R5-06 20 44405749 44405749 C T WFDC3 Missense_Mutation p.G153D 0.37 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 20 44416581 44416581 G A WFDC3 Silent p.S84S 0.28 TCGA-FW-A3R5-06 20 44420687 44420687 G A DNTTIP1 Missense_Mutation p.G15E 0.24 deleterious_low_confidence(0.02) benign(0.144) TCGA-FW-A3R5-06 20 44420688 44420688 G A DNTTIP1 Silent p.G15G 0.32 TCGA-FW-A3R5-06 20 44439880 44439880 C T DNTTIP1 3'UTR 0.30 TCGA-FW-A3R5-06 20 44445451 44445451 C T UBE2C 3'UTR 0.19 TCGA-FW-A3R5-06 20 44455938 44455938 C T TNNC2 5'UTR 0.16 TCGA-FW-A3R5-06 20 44569769 44569769 C T PCIF1 Missense_Mutation p.P199L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 44589351 44589351 G A ZNF335 Silent p.F562F 0.24 TCGA-FW-A3R5-06 20 44596019 44596019 G A ZNF335 Intron 0.29 TCGA-FW-A3R5-06 20 44598104 44598104 G A ZNF335 Missense_Mutation p.P143L 0.11 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 20 44639169 44639169 C T MMP9 Missense_Mutation p.A140V 0.28 tolerated(0.13) possibly_damaging(0.866) TCGA-FW-A3R5-06 20 44639787 44639787 C T MMP9 Missense_Mutation p.P219S 0.30 tolerated(0.15) benign(0.008) TCGA-FW-A3R5-06 20 44640909 44640909 G A MMP9 Silent p.S377S 0.29 TCGA-FW-A3R5-06 20 44640922 44640922 G A MMP9 Missense_Mutation p.D382N 0.31 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 20 44664043 44664043 G A SLC12A5 Missense_Mutation p.E73K 0.10 deleterious(0) possibly_damaging(0.881) TCGA-FW-A3R5-06 20 44664151 44664151 G A SLC12A5 Missense_Mutation p.G109S 0.28 tolerated(0.16) benign(0.013) TCGA-FW-A3R5-06 20 44664162 44664162 G A SLC12A5 Silent p.K112K 0.27 TCGA-FW-A3R5-06 20 44669131 44669131 G A SLC12A5 Silent p.V267V 0.34 TCGA-FW-A3R5-06 20 44669280 44669280 G A SLC12A5 Intron 0.19 TCGA-FW-A3R5-06 20 44671797 44671797 C T SLC12A5 Missense_Mutation p.L381F 0.32 tolerated(0.13) probably_damaging(0.918) TCGA-FW-A3R5-06 20 44673604 44673604 G A SLC12A5 Splice_Site p.X488_splice 0.35 TCGA-FW-A3R5-06 20 44673674 44673674 C T SLC12A5 Silent p.V511V 0.21 TCGA-FW-A3R5-06 20 44676097 44676097 C T SLC12A5 Missense_Mutation p.L621F 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 20 44684879 44684879 G A SLC12A5 Missense_Mutation p.A983T 0.33 tolerated(0.41) benign(0.003) TCGA-FW-A3R5-06 20 44685808 44685808 G A SLC12A5 Splice_Site p.X1065_splice 0.12 TCGA-FW-A3R5-06 20 44685809 44685809 G A SLC12A5 Silent p.L1065L 0.13 TCGA-FW-A3R5-06 20 44691437 44691437 G A NCOA5 Silent p.L414L 0.28 TCGA-FW-A3R5-06 20 44803639 44803639 C T CDH22 Missense_Mutation p.D665N 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 44815231 44815231 G A CDH22 Silent p.I553I 0.24 TCGA-FW-A3R5-06 20 44845619 44845619 C T CDH22 Silent p.T228T 0.25 TCGA-FW-A3R5-06 20 44983754 44983754 G A SLC35C2 Missense_Mutation p.R179C 0.25 deleterious(0.03) probably_damaging(0.962) TCGA-FW-A3R5-06 20 44986361 44986361 G A SLC35C2 Missense_Mutation p.L58F 0.23 tolerated(0.08) benign(0.027) TCGA-FW-A3R5-06 20 45129804 45129804 G A ZNF334 3'UTR 0.24 TCGA-FW-A3R5-06 20 45130287 45130287 C T ZNF334 Missense_Mutation p.R564K 0.26 tolerated(0.07) benign(0.006) TCGA-FW-A3R5-06 20 45130736 45130736 G A ZNF334 Silent p.F414F 0.09 TCGA-FW-A3R5-06 20 45224880 45224880 G A SLC13A3 Missense_Mutation p.S237F 0.26 deleterious(0) possibly_damaging(0.892) TCGA-FW-A3R5-06 20 45242109 45242109 G A SLC13A3 Nonsense_Mutation p.Q123* 0.26 TCGA-FW-A3R5-06 20 45353847 45353847 G A SLC2A10 Missense_Mutation p.A58T 0.25 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 20 45354341 45354341 C T SLC2A10 Silent p.F222F 0.26 TCGA-FW-A3R5-06 20 45354698 45354698 C T SLC2A10 Silent p.L341L 0.23 TCGA-FW-A3R5-06 20 45355503 45355503 T G SLC2A10 Missense_Mutation p.V430G 0.17 deleterious(0.01) benign(0.065) TCGA-FW-A3R5-06 20 45633599 45633599 C T EYA2 Silent p.L58L 0.12 TCGA-FW-A3R5-06 20 45725748 45725748 G A EYA2 Missense_Mutation p.E277K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 45839446 45839446 A C ZMYND8 Missense_Mutation p.L1176R 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 46267784 46267784 C T NCOA3 Missense_Mutation p.R849C 0.35 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 20 46267841 46267841 C T NCOA3 Missense_Mutation p.P868S 0.29 tolerated(0.13) benign(0.013) TCGA-FW-A3R5-06 20 46267842 46267842 C T NCOA3 Missense_Mutation p.P868L 0.30 deleterious(0.01) benign(0.091) TCGA-FW-A3R5-06 20 46365631 46365631 G A SULF2 Silent p.H77H 0.08 TCGA-FW-A3R5-06 20 4713310 4713310 G A PRNT Missense_Mutation p.L5F 0.32 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-FW-A3R5-06 20 47242394 47242394 C T PREX1 3'UTR 0.40 TCGA-FW-A3R5-06 20 47274755 47274755 C T PREX1 Silent p.Q631Q 0.10 TCGA-FW-A3R5-06 20 47274758 47274758 G A PREX1 Silent p.P630P 0.10 TCGA-FW-A3R5-06 20 47361637 47361637 G A PREX1 Silent p.F113F 0.07 TCGA-FW-A3R5-06 20 47700684 47700684 C T CSE1L Missense_Mutation p.P535L 0.13 tolerated(0.13) benign(0.031) TCGA-FW-A3R5-06 20 47752396 47752396 T C STAU1 Missense_Mutation p.K195E 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 47841689 47841689 G A DDX27 Missense_Mutation p.E216K 0.22 tolerated(0.24) benign(0.002) TCGA-FW-A3R5-06 20 47841699 47841699 C T DDX27 Missense_Mutation p.S219L 0.22 deleterious(0.01) benign(0.002) TCGA-FW-A3R5-06 20 47887209 47887209 G A ZNFX1 Silent p.F380F 0.31 TCGA-FW-A3R5-06 20 47887759 47887759 G A ZNFX1 Missense_Mutation p.S197F 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 47990425 47990425 C T KCNB1 Missense_Mutation p.E558K 0.23 tolerated_low_confidence(0.41) benign(0.42) TCGA-FW-A3R5-06 20 47990456 47990456 G A KCNB1 Silent p.T547T 0.26 TCGA-FW-A3R5-06 20 48098736 48098736 G A KCNB1 Silent p.S94S 0.19 TCGA-FW-A3R5-06 20 48124429 48124429 G A PTGIS 3'UTR 0.21 TCGA-FW-A3R5-06 20 48124509 48124509 C T PTGIS Missense_Mutation p.G484D 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 48124510 48124510 C T PTGIS Missense_Mutation p.G484S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 20 48160882 48160882 C T PTGIS Missense_Mutation p.E161K 0.22 tolerated(0.15) benign(0.123) TCGA-FW-A3R5-06 20 48252812 48252812 G A B4GALT5 3'UTR 0.14 TCGA-FW-A3R5-06 20 48471989 48471989 C T SLC9A8 Missense_Mutation p.S211F 0.25 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 20 48472032 48472032 C T SLC9A8 Silent p.F225F 0.27 TCGA-FW-A3R5-06 20 48525075 48525075 G A SPATA2 5'UTR 0.46 TCGA-FW-A3R5-06 20 48600619 48600619 C T SNAI1 Missense_Mutation p.S114F 0.08 deleterious(0.04) probably_damaging(0.947) TCGA-FW-A3R5-06 20 48760118 48760118 G A TMEM189-UBE2V1 Silent p.F54F 0.41 TCGA-FW-A3R5-06 20 49211924 49211924 C T FAM65C Missense_Mutation p.A674T 0.29 tolerated(0.32) benign(0.071) TCGA-FW-A3R5-06 20 49218978 49218978 G A FAM65C Silent p.G426G 0.26 TCGA-FW-A3R5-06 20 49219042 49219042 G A FAM65C Missense_Mutation p.S405F 0.21 tolerated(0.06) probably_damaging(0.955) TCGA-FW-A3R5-06 20 49227424 49227424 C T FAM65C Missense_Mutation p.R127K 0.28 deleterious(0) possibly_damaging(0.839) TCGA-FW-A3R5-06 20 49511034 49511034 G A ADNP Missense_Mutation p.P73S 0.23 deleterious(0.01) benign(0.251) TCGA-FW-A3R5-06 20 49626345 49626345 C T KCNG1 Silent p.A177A 0.18 TCGA-FW-A3R5-06 20 49626490 49626490 G A KCNG1 Missense_Mutation p.T129I 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 20 49626504 49626504 G A KCNG1 Silent p.F124F 0.16 TCGA-FW-A3R5-06 20 50048801 50048801 G A NFATC2 Missense_Mutation p.T842I 0.11 tolerated(0.13) benign(0.005) TCGA-FW-A3R5-06 20 50139825 50139825 G A NFATC2 Missense_Mutation p.P319S 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 20 50159027 50159027 G A NFATC2 Silent p.P4P 0.18 TCGA-FW-A3R5-06 20 50217709 50217709 G A ATP9A 3'UTR 0.22 TCGA-FW-A3R5-06 20 50217819 50217819 G A ATP9A Silent p.L1025L 0.34 TCGA-FW-A3R5-06 20 50217868 50217868 G A ATP9A Missense_Mutation p.T1009I 0.31 deleterious(0) benign(0.206) TCGA-FW-A3R5-06 20 50235567 50235567 C T ATP9A Missense_Mutation p.E711K 0.25 tolerated(0.24) possibly_damaging(0.898) TCGA-FW-A3R5-06 20 50290710 50290710 G A ATP9A Missense_Mutation p.S340F 0.18 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 20 50329519 50329519 C T ATP9A Missense_Mutation p.R141Q 0.32 tolerated(0.38) benign(0.105) TCGA-FW-A3R5-06 20 50401220 50401220 G A SALL4 Missense_Mutation p.H916Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 20 50407939 50407939 C T SALL4 Silent p.G361G 0.17 TCGA-FW-A3R5-06 20 50776819 50776819 G A ZFP64 Silent p.P202P 0.33 TCGA-FW-A3R5-06 20 5157183 5157183 C T CDS2 Intron 0.36 TCGA-FW-A3R5-06 20 51870386 51870386 C T TSHZ2 Missense_Mutation p.A130V 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 20 51870938 51870938 C T TSHZ2 Missense_Mutation p.S314L 0.09 deleterious(0) possibly_damaging(0.815) TCGA-FW-A3R5-06 20 51871098 51871098 C T TSHZ2 Silent p.S367S 0.29 TCGA-FW-A3R5-06 20 51871400 51871400 G A TSHZ2 Missense_Mutation p.R468K 0.19 tolerated(1) benign(0) TCGA-FW-A3R5-06 20 51871842 51871842 G A TSHZ2 Silent p.G615G 0.08 TCGA-FW-A3R5-06 20 51871891 51871891 G A TSHZ2 Missense_Mutation p.D632N 0.22 tolerated(0.12) benign(0.04) TCGA-FW-A3R5-06 20 51871921 51871921 G A TSHZ2 Missense_Mutation p.E642K 0.30 tolerated(0.34) benign(0.092) TCGA-FW-A3R5-06 20 51872281 51872281 G A TSHZ2 Missense_Mutation p.D762N 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 20 51872446 51872446 C T TSHZ2 Missense_Mutation p.P817S 0.29 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 20 52591936 52591936 C T BCAS1 Missense_Mutation p.E392K 0.23 tolerated(0.07) benign(0.42) TCGA-FW-A3R5-06 20 52591937 52591937 C T BCAS1 Silent p.A391A 0.23 TCGA-FW-A3R5-06 20 52601976 52601976 G A BCAS1 Silent p.S330S 0.29 TCGA-FW-A3R5-06 20 52645218 52645218 G A BCAS1 Missense_Mutation p.P146S 0.30 tolerated(0.73) benign(0.311) TCGA-FW-A3R5-06 20 52645297 52645297 C T BCAS1 Silent p.V119V 0.25 TCGA-FW-A3R5-06 20 52645340 52645340 C T BCAS1 Missense_Mutation p.G105E 0.15 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 20 52789509 52789509 C T CYP24A1 Missense_Mutation p.E130K 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-FW-A3R5-06 20 52790077 52790077 G A CYP24A1 Silent p.F14F 0.36 TCGA-FW-A3R5-06 20 5282896 5282896 G A PROKR2 Silent p.F315F 0.10 TCGA-FW-A3R5-06 20 5282933 5282933 G A PROKR2 Missense_Mutation p.T303I 0.41 tolerated(0.19) benign(0.013) TCGA-FW-A3R5-06 20 5283061 5283061 C T PROKR2 Silent p.T260T 0.29 TCGA-FW-A3R5-06 20 5283101 5283101 G A PROKR2 Missense_Mutation p.S247F 0.27 deleterious(0.02) possibly_damaging(0.633) TCGA-FW-A3R5-06 20 5294911 5294911 G A PROKR2 Silent p.L35L 0.15 TCGA-FW-A3R5-06 20 53205028 53205028 G A DOK5 Missense_Mutation p.E61K 0.30 tolerated(0.08) probably_damaging(0.949) TCGA-FW-A3R5-06 20 53205055 53205055 C T DOK5 Nonsense_Mutation p.R70* 0.30 TCGA-FW-A3R5-06 20 53266970 53266970 G A DOK5 Silent p.L291L 0.32 TCGA-FW-A3R5-06 20 54573724 54573724 G A CBLN4 Silent p.V165V 0.37 TCGA-FW-A3R5-06 20 54579090 54579090 C T CBLN4 Silent p.S46S 0.19 TCGA-FW-A3R5-06 20 54823836 54823836 G A MC3R 5'UTR 0.26 TCGA-FW-A3R5-06 20 54824044 54824044 G A MC3R Missense_Mutation p.G49S 0.13 tolerated(0.12) probably_damaging(1) TCGA-FW-A3R5-06 20 54824694 54824694 C T MC3R Silent p.I265I 0.38 TCGA-FW-A3R5-06 20 54978716 54978716 C T CSTF1 Missense_Mutation p.P410L 0.22 deleterious(0.01) possibly_damaging(0.782) TCGA-FW-A3R5-06 20 55012584 55012584 C T CASS4 Missense_Mutation p.P134L 0.33 deleterious(0.02) possibly_damaging(0.903) TCGA-FW-A3R5-06 20 55012616 55012616 G A CASS4 Missense_Mutation p.E145K 0.41 deleterious(0) possibly_damaging(0.806) TCGA-FW-A3R5-06 20 55027387 55027387 C T CASS4 Silent p.S385S 0.26 TCGA-FW-A3R5-06 20 55027464 55027464 C T CASS4 Missense_Mutation p.S411F 0.35 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 20 55027865 55027865 G A CASS4 Missense_Mutation p.E545K 0.33 deleterious(0.02) benign(0.248) TCGA-FW-A3R5-06 20 55211807 55211807 C T TFAP2C Missense_Mutation p.A355V 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 5528378 5528378 G A GPCPD1 Missense_Mutation p.P650S 0.31 tolerated(0.81) benign(0) TCGA-FW-A3R5-06 20 5564980 5564980 G A GPCPD1 Intron 0.30 TCGA-FW-A3R5-06 20 55803379 55803379 C T BMP7 Missense_Mutation p.E173K 0.34 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 20 55904880 55904880 C T SPO11 5'UTR 0.33 TCGA-FW-A3R5-06 20 55908293 55908293 A C SPO11 Missense_Mutation p.K99Q 0.10 tolerated(0.33) benign(0.018) TCGA-FW-A3R5-06 20 56078540 56078540 C T CTCFL Missense_Mutation p.G598S 0.32 tolerated(0.32) benign(0.005) TCGA-FW-A3R5-06 20 56083794 56083794 G A CTCFL Silent p.F514F 0.25 TCGA-FW-A3R5-06 20 56087734 56087734 C T CTCFL Missense_Mutation p.E469K 0.31 deleterious(0) possibly_damaging(0.907) TCGA-FW-A3R5-06 20 56090715 56090715 C T CTCFL Intron 0.32 TCGA-FW-A3R5-06 20 56094424 56094424 C T CTCFL Missense_Mutation p.G255E 0.31 tolerated(0.17) benign(0) TCGA-FW-A3R5-06 20 56099325 56099325 G A CTCFL Intron 0.28 TCGA-FW-A3R5-06 20 56136651 56136651 G A PCK1 Missense_Mutation p.E62K 0.31 tolerated(0.56) benign(0.001) TCGA-FW-A3R5-06 20 56137167 56137167 G A PCK1 Missense_Mutation p.E89K 0.25 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 20 56137941 56137941 C T PCK1 Missense_Mutation p.P199L 0.09 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 20 56138249 56138249 G A PCK1 Missense_Mutation p.G259E 0.33 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 20 56138689 56138689 G A PCK1 Silent p.G289G 0.35 TCGA-FW-A3R5-06 20 56139282 56139282 C T PCK1 Missense_Mutation p.S340L 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-FW-A3R5-06 20 56139555 56139555 C T PCK1 Missense_Mutation p.P402S 0.26 deleterious(0.02) possibly_damaging(0.515) TCGA-FW-A3R5-06 20 56140423 56140423 G A PCK1 Missense_Mutation p.D478N 0.29 deleterious(0.01) possibly_damaging(0.852) TCGA-FW-A3R5-06 20 56140524 56140524 C T PCK1 Silent p.I511I 0.23 TCGA-FW-A3R5-06 20 56140895 56140895 C T PCK1 3'UTR 0.33 TCGA-FW-A3R5-06 20 56189956 56189956 C T ZBP1 Silent p.T163T 0.27 TCGA-FW-A3R5-06 20 56190114 56190114 C T ZBP1 Missense_Mutation p.E111K 0.16 tolerated(0.21) benign(0.007) TCGA-FW-A3R5-06 20 56234689 56234689 G A PMEPA1 Silent p.I58I 0.19 TCGA-FW-A3R5-06 20 57035978 57035978 C T APCDD1L Silent p.E458E 0.28 TCGA-FW-A3R5-06 20 57415743 57415743 C T RP4-806M20.3 5'Flank 0.22 TCGA-FW-A3R5-06 20 57428860 57428860 G A GNAS Silent p.Q180Q 0.36 TCGA-FW-A3R5-06 20 57429363 57429363 G A GNAS Missense_Mutation p.R348Q 0.28 tolerated_low_confidence(0.08) unknown(0) TCGA-FW-A3R5-06 20 57478841 57478841 C T GNAS Missense_Mutation p.P786S 0.19 tolerated(0.08) benign(0.301) TCGA-FW-A3R5-06 20 57767539 57767539 C T ZNF831 Missense_Mutation p.P489S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 20 57767669 57767669 C T ZNF831 Missense_Mutation p.P532L 0.50 tolerated(0.05) benign(0.162) TCGA-FW-A3R5-06 20 57767876 57767876 G A ZNF831 Missense_Mutation p.R601K 0.20 tolerated(0.59) benign(0.021) TCGA-FW-A3R5-06 20 57767944 57767944 G A ZNF831 Missense_Mutation p.G624R 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 57768049 57768049 C T ZNF831 Missense_Mutation p.P659S 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-FW-A3R5-06 20 57768050 57768050 C T ZNF831 Missense_Mutation p.P659L 0.24 deleterious(0.04) benign(0.07) TCGA-FW-A3R5-06 20 57768823 57768823 C T ZNF831 Missense_Mutation p.P917S 0.31 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 20 57768863 57768863 C T ZNF831 Missense_Mutation p.S930F 0.33 deleterious(0.02) benign(0.154) TCGA-FW-A3R5-06 20 57769146 57769146 G A ZNF831 Silent p.G1024G 0.32 TCGA-FW-A3R5-06 20 57769732 57769732 G A ZNF831 Missense_Mutation p.G1220S 0.34 tolerated(0.21) possibly_damaging(0.702) TCGA-FW-A3R5-06 20 57771017 57771017 C T ZNF831 Missense_Mutation p.R1278C 0.19 tolerated(0.1) benign(0.007) TCGA-FW-A3R5-06 20 57829893 57829893 G A ZNF831 3'UTR 0.29 TCGA-FW-A3R5-06 20 58330267 58330267 G A PHACTR3 Missense_Mutation p.G130E 0.25 tolerated(0.16) benign(0.023) TCGA-FW-A3R5-06 20 58342389 58342389 C T PHACTR3 Silent p.S230S 0.33 TCGA-FW-A3R5-06 20 58342391 58342391 C T PHACTR3 Missense_Mutation p.P231L 0.33 tolerated(0.05) possibly_damaging(0.543) TCGA-FW-A3R5-06 20 58475249 58475249 G A SYCP2 Missense_Mutation p.P450S 0.24 tolerated(0.15) benign(0.132) TCGA-FW-A3R5-06 20 58491601 58491601 G A SYCP2 Silent p.F151F 0.08 TCGA-FW-A3R5-06 20 58514657 58514657 G A PPP1R3D Silent p.G110G 0.27 TCGA-FW-A3R5-06 20 58519433 58519433 C T FAM217B Silent p.F145F 0.07 TCGA-FW-A3R5-06 20 58533821 58533821 C A CDH26 Missense_Mutation p.L14I 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.828) TCGA-FW-A3R5-06 20 58567466 58567466 C T CDH26 Silent p.V439V 0.22 TCGA-FW-A3R5-06 20 58569295 58569295 C T CDH26 Intron 0.16 TCGA-FW-A3R5-06 20 58587853 58587853 C T CDH26 3'UTR 0.46 TCGA-FW-A3R5-06 20 5903019 5903019 G A CHGB Missense_Mutation p.E77K 0.29 tolerated(0.08) probably_damaging(0.943) TCGA-FW-A3R5-06 20 5903153 5903153 G A CHGB Silent p.E121E 0.48 TCGA-FW-A3R5-06 20 5903942 5903942 G A CHGB Silent p.E384E 0.17 TCGA-FW-A3R5-06 20 5904282 5904282 G A CHGB Missense_Mutation p.E498K 0.31 deleterious(0.04) possibly_damaging(0.811) TCGA-FW-A3R5-06 20 6022130 6022130 C T LRRN4 Silent p.G587G 0.32 TCGA-FW-A3R5-06 20 6022607 6022607 C T LRRN4 Silent p.G428G 0.33 TCGA-FW-A3R5-06 20 60348221 60348221 C T CDH4 Missense_Mutation p.P187S 0.56 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 20 60485496 60485496 G A CDH4 Missense_Mutation p.E403K 0.29 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 20 6065875 6065875 C T FERMT1 Missense_Mutation p.M477I 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 20 60791572 60791572 C T HRH3 Silent p.G276G 0.36 TCGA-FW-A3R5-06 20 60791598 60791598 C T HRH3 Missense_Mutation p.E268K 0.38 tolerated(0.42) benign(0.034) TCGA-FW-A3R5-06 20 60886272 60886272 C T LAMA5 Missense_Mutation p.G3345D 0.20 benign(0.012) TCGA-FW-A3R5-06 20 60887760 60887760 T C LAMA5 Missense_Mutation p.E3052G 0.20 benign(0.04) TCGA-FW-A3R5-06 20 60899610 60899610 C T LAMA5 Missense_Mutation p.E1844K 0.45 benign(0.04) TCGA-FW-A3R5-06 20 60902947 60902947 G A LAMA5 Missense_Mutation p.P1591L 0.37 benign(0.006) TCGA-FW-A3R5-06 20 60904229 60904229 G A LAMA5 Silent p.F1400F 0.28 TCGA-FW-A3R5-06 20 60908263 60908263 G A LAMA5 Silent p.F1055F 0.25 TCGA-FW-A3R5-06 20 6091063 6091063 G A FERMT1 Missense_Mutation p.P210S 0.34 tolerated(0.35) benign(0.137) TCGA-FW-A3R5-06 20 6091073 6091073 G A FERMT1 Silent p.F206F 0.20 TCGA-FW-A3R5-06 20 60911420 60911420 G A LAMA5 Missense_Mutation p.P767S 0.28 possibly_damaging(0.574) TCGA-FW-A3R5-06 20 60912783 60912783 G A LAMA5 Missense_Mutation p.P676L 0.24 probably_damaging(0.988) TCGA-FW-A3R5-06 20 6093215 6093215 C T FERMT1 Silent p.K147K 0.23 TCGA-FW-A3R5-06 20 6096537 6096537 C T FERMT1 Silent p.P102P 0.30 TCGA-FW-A3R5-06 20 6096664 6096664 G A FERMT1 Missense_Mutation p.A60V 0.28 deleterious(0) benign(0.38) TCGA-FW-A3R5-06 20 60987918 60987918 C T RBBP8NL Missense_Mutation p.E572K 0.29 tolerated(0.06) benign(0.046) TCGA-FW-A3R5-06 20 60991260 60991260 C T RBBP8NL Missense_Mutation p.E116K 0.15 tolerated(0.97) benign(0.004) TCGA-FW-A3R5-06 20 61040427 61040427 G A GATA5 Missense_Mutation p.P336L 0.29 deleterious(0.01) benign(0.218) TCGA-FW-A3R5-06 20 61050596 61050596 G A GATA5 Intron 0.25 TCGA-FW-A3R5-06 20 61150782 61150782 G A C20orf166 5'UTR 0.13 TCGA-FW-A3R5-06 20 61386197 61386197 C T NTSR1 Missense_Mutation p.P292L 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-FW-A3R5-06 20 61444719 61444719 C T OGFR Silent p.P584P 0.13 TCGA-FW-A3R5-06 20 61459284 61459284 G A COL9A3 Missense_Mutation p.G286S 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 61468560 61468560 C T COL9A3 Nonsense_Mutation p.R577* 0.33 TCGA-FW-A3R5-06 20 61511288 61511288 G A DIDO1 Missense_Mutation p.S2007L 0.07 benign(0.089) TCGA-FW-A3R5-06 20 61511765 61511765 G A DIDO1 Missense_Mutation p.P1848L 0.10 benign(0.015) TCGA-FW-A3R5-06 20 61513219 61513219 G A DIDO1 Silent p.I1363I 0.30 TCGA-FW-A3R5-06 20 61525396 61525396 G A DIDO1 Missense_Mutation p.P908L 0.35 benign(0.231) TCGA-FW-A3R5-06 20 61542375 61542375 G A DIDO1 Missense_Mutation p.P197L 0.39 possibly_damaging(0.776) TCGA-FW-A3R5-06 20 61588800 61588800 G A SLC17A9 Missense_Mutation p.G89S 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 61596512 61596512 C T SLC17A9 Silent p.L313L 0.32 TCGA-FW-A3R5-06 20 61834443 61834443 G A YTHDF1 Silent p.A283A 0.25 TCGA-FW-A3R5-06 20 61834932 61834932 G A YTHDF1 Silent p.F120F 0.26 TCGA-FW-A3R5-06 20 61908562 61908562 C T ARFGAP1 Silent p.V116V 0.33 TCGA-FW-A3R5-06 20 61939428 61939428 G A COL20A1 Missense_Mutation p.G254E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 61940042 61940042 G A COL20A1 Silent p.V308V 0.44 TCGA-FW-A3R5-06 20 61945235 61945235 G A COL20A1 Missense_Mutation p.E784K 0.12 tolerated(0.11) probably_damaging(0.934) TCGA-FW-A3R5-06 20 61947987 61947987 C T COL20A1 Silent p.F869F 0.33 TCGA-FW-A3R5-06 20 61978179 61978179 C T CHRNA4 Missense_Mutation p.D599N 0.32 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 20 61981797 61981797 G A CHRNA4 Silent p.V322V 0.29 TCGA-FW-A3R5-06 20 61981878 61981878 G A CHRNA4 Silent p.I295I 0.31 TCGA-FW-A3R5-06 20 61982370 61982370 C T CHRNA4 Silent p.G131G 0.15 TCGA-FW-A3R5-06 20 62039787 62039787 C T KCNQ2 Silent p.R622R 0.20 TCGA-FW-A3R5-06 20 62070963 62070963 G A KCNQ2 Silent p.F305F 0.21 TCGA-FW-A3R5-06 20 62126323 62126323 C T EEF1A2 Silent p.V152V 0.11 TCGA-FW-A3R5-06 20 62126344 62126344 C T EEF1A2 Silent p.V145V 0.25 TCGA-FW-A3R5-06 20 62165016 62165016 C T PTK6 Silent p.R186R 0.33 TCGA-FW-A3R5-06 20 62178550 62178550 G A SRMS Silent p.F89F 0.25 TCGA-FW-A3R5-06 20 62178649 62178649 G A SRMS Silent p.F56F 0.24 TCGA-FW-A3R5-06 20 62192276 62192276 G A HELZ2 Missense_Mutation p.L2385F 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 62192546 62192546 G A HELZ2 Silent p.A2345A 0.12 TCGA-FW-A3R5-06 20 62195402 62195402 G A HELZ2 Silent p.P1591P 0.29 TCGA-FW-A3R5-06 20 62203493 62203493 G A HELZ2 Silent p.P82P 0.27 TCGA-FW-A3R5-06 20 62221711 62221711 G A GMEB2 Missense_Mutation p.P442S 0.26 tolerated(0.18) probably_damaging(0.998) TCGA-FW-A3R5-06 20 62275220 62275220 G A STMN3 Silent p.S60S 0.27 TCGA-FW-A3R5-06 20 62367218 62367218 C A ZGPAT Missense_Mutation p.L515M 0.41 deleterious(0.01) probably_damaging(0.963) TCGA-FW-A3R5-06 20 62407280 62407280 C T ZBTB46 Missense_Mutation p.D325N 0.34 deleterious(0.01) benign(0.409) TCGA-FW-A3R5-06 20 62594450 62594450 G A ZNF512B Missense_Mutation p.P656S 0.25 tolerated(0.25) possibly_damaging(0.796) TCGA-FW-A3R5-06 20 62598022 62598022 G A ZNF512B Missense_Mutation p.P169L 0.20 deleterious(0) benign(0.097) TCGA-FW-A3R5-06 20 62606706 62606706 C T SAMD10 3'UTR 0.37 TCGA-FW-A3R5-06 20 62612533 62612533 C T PRPF6 5'UTR 0.30 TCGA-FW-A3R5-06 20 62632583 62632583 C T PRPF6 Missense_Mutation p.L393F 0.36 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 20 62658387 62658387 C T PRPF6 Missense_Mutation p.A694V 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-FW-A3R5-06 20 62658388 62658388 C T PRPF6 Silent p.A694A 0.34 TCGA-FW-A3R5-06 20 62659058 62659058 C T PRPF6 Missense_Mutation p.R770C 0.28 deleterious(0) possibly_damaging(0.649) TCGA-FW-A3R5-06 20 62729258 62729258 C T OPRL1 Silent p.L113L 0.37 TCGA-FW-A3R5-06 20 62729720 62729720 C T OPRL1 Silent p.P227P 0.32 TCGA-FW-A3R5-06 20 62737853 62737853 G A NPBWR2 Missense_Mutation p.P111L 0.31 deleterious(0) possibly_damaging(0.571) TCGA-FW-A3R5-06 20 62839224 62839224 C T MYT1 Silent p.V225V 0.30 TCGA-FW-A3R5-06 20 62839329 62839329 G A MYT1 Silent p.E260E 0.36 TCGA-FW-A3R5-06 20 62844957 62844957 G A MYT1 Missense_Mutation p.G530R 0.36 probably_damaging(0.924) TCGA-FW-A3R5-06 20 62871152 62871152 G A MYT1 Missense_Mutation p.E1045K 0.26 possibly_damaging(0.777) TCGA-FW-A3R5-06 20 62904588 62904588 C T PCMTD2 Missense_Mutation p.R241C 0.20 tolerated(0.13) benign(0.014) TCGA-FW-A3R5-06 20 6750866 6750866 G A BMP2 Silent p.R31R 0.43 TCGA-FW-A3R5-06 20 6750959 6750959 C T BMP2 Silent p.G62G 0.19 TCGA-FW-A3R5-06 20 6759299 6759299 C T BMP2 Nonsense_Mutation p.Q252* 0.23 TCGA-FW-A3R5-06 20 6759655 6759655 G A BMP2 Silent p.S370S 0.21 TCGA-FW-A3R5-06 20 6759682 6759682 G A BMP2 Silent p.K379K 0.29 TCGA-FW-A3R5-06 20 7866409 7866409 G A HAO1 Missense_Mutation p.L306F 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-FW-A3R5-06 20 7875820 7875820 G A HAO1 Missense_Mutation p.S258L 0.32 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 20 8637897 8637897 C T PLCB1 Missense_Mutation p.P221S 0.10 tolerated(0.4) benign(0.022) TCGA-FW-A3R5-06 20 8665652 8665652 G A PLCB1 Silent p.L312L 0.31 TCGA-FW-A3R5-06 20 8689378 8689378 C T PLCB1 Missense_Mutation p.S410L 0.35 deleterious(0) possibly_damaging(0.741) TCGA-FW-A3R5-06 20 8698473 8698473 C T PLCB1 Silent p.F497F 0.23 TCGA-FW-A3R5-06 20 8755350 8755350 G A PLCB1 Missense_Mutation p.R1032Q 0.25 tolerated(0.57) benign(0.015) TCGA-FW-A3R5-06 20 9352995 9352995 G A PLCB4 Missense_Mutation p.E211K 0.13 tolerated(0.46) possibly_damaging(0.487) TCGA-FW-A3R5-06 20 9364963 9364963 C T PLCB4 Silent p.F323F 0.28 TCGA-FW-A3R5-06 20 9370586 9370586 T C PLCB4 Missense_Mutation p.S407P 0.21 deleterious(0) probably_damaging(0.917) TCGA-FW-A3R5-06 20 9371224 9371224 G A PLCB4 Missense_Mutation p.G429R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 9374249 9374249 G A PLCB4 Silent p.R446R 0.28 TCGA-FW-A3R5-06 20 9382181 9382181 G A PLCB4 Missense_Mutation p.E519K 0.39 tolerated(0.51) benign(0.003) TCGA-FW-A3R5-06 20 9389291 9389291 C T PLCB4 Missense_Mutation p.H589Y 0.23 deleterious(0.04) probably_damaging(0.94) TCGA-FW-A3R5-06 20 9389741 9389741 G A PLCB4 Missense_Mutation p.G626R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 20 9391729 9391729 C T PLCB4 Missense_Mutation p.S670L 0.36 tolerated(0.16) benign(0.422) TCGA-FW-A3R5-06 20 9402046 9402046 C T PLCB4 Missense_Mutation p.R741C 0.28 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 20 9434089 9434089 G A PLCB4 Silent p.E980E 0.09 TCGA-FW-A3R5-06 20 9449315 9449315 G A PLCB4 Missense_Mutation p.E1104K 0.31 deleterious(0.01) possibly_damaging(0.763) TCGA-FW-A3R5-06 20 9459702 9459702 G A PLCB4 3'UTR 0.20 TCGA-FW-A3R5-06 20 9510422 9510422 G A LAMP5 Silent p.Q266Q 0.15 TCGA-FW-A3R5-06 20 9523353 9523353 G A PAK7 Silent p.S628S 0.19 TCGA-FW-A3R5-06 20 9523354 9523354 G A PAK7 Missense_Mutation p.S628F 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 20 9560897 9560897 C T PAK7 Silent p.P295P 0.27 TCGA-FW-A3R5-06 20 9560965 9560965 G A PAK7 Silent p.L273L 0.28 TCGA-FW-A3R5-06 20 9561151 9561151 C T PAK7 Missense_Mutation p.E211K 0.33 tolerated_low_confidence(0.26) benign(0.073) TCGA-FW-A3R5-06 20 9561313 9561313 C T PAK7 Missense_Mutation p.D157N 0.26 tolerated(0.16) benign(0.045) TCGA-FW-A3R5-06 20 9561350 9561350 T A PAK7 Missense_Mutation p.E144D 0.33 tolerated(0.51) benign(0.001) TCGA-FW-A3R5-06 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.18 tolerated(0.21) benign(0.053) TCGA-FW-A3R5-06 20 9624925 9624925 C T PAK7 Missense_Mutation p.E18K 0.26 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 21 10862802 10862802 C T IGHV1OR21-1 Missense_Mutation p.P33L 0.15 deleterious(0.01) possibly_damaging(0.89) TCGA-FW-A3R5-06 21 10862824 10862824 C T IGHV1OR21-1 Silent p.S40S 0.14 TCGA-FW-A3R5-06 21 10906962 10906962 C T TPTE Silent p.V533V 0.07 TCGA-FW-A3R5-06 21 10910355 10910355 G A TPTE Silent p.F467F 0.12 TCGA-FW-A3R5-06 21 10914373 10914373 C T TPTE Missense_Mutation p.G449E 0.10 tolerated(0.55) benign(0.006) TCGA-FW-A3R5-06 21 10933857 10933857 C T TPTE Missense_Mutation p.G341D 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 10941926 10941926 G A TPTE Silent p.F259F 0.11 TCGA-FW-A3R5-06 21 10942755 10942755 C T TPTE Missense_Mutation p.R229Q 0.12 deleterious(0.04) probably_damaging(0.982) TCGA-FW-A3R5-06 21 10942968 10942968 G A TPTE Missense_Mutation p.H207Y 0.08 tolerated(0.14) benign(0.444) TCGA-FW-A3R5-06 21 10951376 10951376 G A TPTE Silent p.D112D 0.09 TCGA-FW-A3R5-06 21 10971322 10971322 C T TPTE Missense_Mutation p.G12E 0.13 tolerated_low_confidence(0.36) benign(0.095) TCGA-FW-A3R5-06 21 10996112 10996112 C T TPTE RNA 0.14 TCGA-FW-A3R5-06 21 10998243 10998243 C T TPTE RNA 0.06 TCGA-FW-A3R5-06 21 10998270 10998270 C T TPTE RNA 0.14 TCGA-FW-A3R5-06 21 11020889 11020889 C T BAGE2 RNA 0.16 TCGA-FW-A3R5-06 21 11038913 11038913 G A BAGE2 RNA 0.04 TCGA-FW-A3R5-06 21 11039025 11039025 C T BAGE2 RNA 0.04 TCGA-FW-A3R5-06 21 11039053 11039053 C T BAGE2 RNA 0.05 TCGA-FW-A3R5-06 21 11039058 11039058 C T BAGE2 RNA 0.09 TCGA-FW-A3R5-06 21 11039138 11039138 G A BAGE2 RNA 0.08 TCGA-FW-A3R5-06 21 11039248 11039248 C T BAGE2 RNA 0.05 TCGA-FW-A3R5-06 21 11039377 11039377 C T BAGE2 RNA 0.08 TCGA-FW-A3R5-06 21 11098833 11098833 G A BAGE2 RNA 0.10 TCGA-FW-A3R5-06 21 11098882 11098882 C T BAGE2 RNA 0.12 TCGA-FW-A3R5-06 21 14982958 14982958 C T POTED Nonsense_Mutation p.R137* 0.11 TCGA-FW-A3R5-06 21 15013746 15013746 G A POTED Silent p.L538L 0.46 TCGA-FW-A3R5-06 21 15352085 15352085 C T ANKRD20A11P RNA 0.14 TCGA-FW-A3R5-06 21 15561637 15561637 C T LIPI Silent p.R71R 0.22 TCGA-FW-A3R5-06 21 15599286 15599286 C T RBM11 Missense_Mutation p.S173L 0.11 tolerated(0.5) unknown(0) TCGA-FW-A3R5-06 21 15753742 15753742 G A HSPA13 Missense_Mutation p.P50S 0.30 tolerated(0.17) possibly_damaging(0.817) TCGA-FW-A3R5-06 21 15858288 15858288 G A SAMSN1 Missense_Mutation p.S424F 0.18 deleterious(0.04) possibly_damaging(0.776) TCGA-FW-A3R5-06 21 15893541 15893541 C T SAMSN1 Missense_Mutation p.R88Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 16339673 16339673 G A NRIP1 Nonsense_Mutation p.R281* 0.24 TCGA-FW-A3R5-06 21 16339859 16339859 G A NRIP1 Missense_Mutation p.P219S 0.22 tolerated(0.21) benign(0.104) TCGA-FW-A3R5-06 21 17197380 17197380 G A USP25 Missense_Mutation p.R435K 0.12 tolerated(0.33) benign(0.22) TCGA-FW-A3R5-06 21 17246733 17246733 C T USP25 Missense_Mutation p.S896F 0.30 deleterious(0) probably_damaging(0.934) TCGA-FW-A3R5-06 21 17250265 17250265 G A USP25 Missense_Mutation p.D984N 0.18 tolerated(0.47) probably_damaging(0.986) TCGA-FW-A3R5-06 21 17912223 17912223 C T MIRLET7C RNA 0.18 TCGA-FW-A3R5-06 21 19638318 19638318 C T CHODL Missense_Mutation p.S262L 0.31 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 21 19701585 19701585 C T TMPRSS15 Missense_Mutation p.G561R 0.23 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 21 19713778 19713778 G A TMPRSS15 Missense_Mutation p.L506F 0.26 tolerated(0.7) benign(0.021) TCGA-FW-A3R5-06 21 19725294 19725294 C T TMPRSS15 Nonsense_Mutation p.W366* 0.21 TCGA-FW-A3R5-06 21 22790820 22790820 G A NCAM2 Missense_Mutation p.G471R 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 27284094 27284094 G A APP Missense_Mutation p.S623F 0.11 tolerated(0.1) possibly_damaging(0.629) TCGA-FW-A3R5-06 21 27840696 27840696 C T CYYR1 3'UTR 0.35 TCGA-FW-A3R5-06 21 27840758 27840758 G A CYYR1 3'UTR 0.35 TCGA-FW-A3R5-06 21 27938585 27938585 G A CYYR1 Missense_Mutation p.S59L 0.21 deleterious(0.05) probably_damaging(0.979) TCGA-FW-A3R5-06 21 28304412 28304412 G A ADAMTS5 Missense_Mutation p.P654S 0.64 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 28305321 28305321 G A ADAMTS5 Nonsense_Mutation p.Q578* 0.24 TCGA-FW-A3R5-06 21 30302747 30302747 G A LTN1 3'UTR 0.09 TCGA-FW-A3R5-06 21 30307468 30307468 G A LTN1 Missense_Mutation p.S1659F 0.29 deleterious(0) benign(0.173) TCGA-FW-A3R5-06 21 30316198 30316198 G A LTN1 Silent p.S1383S 0.27 TCGA-FW-A3R5-06 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 21 30971164 30971164 C T GRIK1 Missense_Mutation p.E398K 0.29 tolerated(0.15) benign(0.02) TCGA-FW-A3R5-06 21 31062105 31062105 C T GRIK1 Missense_Mutation p.D163N 0.11 deleterious(0) possibly_damaging(0.781) TCGA-FW-A3R5-06 21 31066223 31066223 G A GRIK1 Missense_Mutation p.S93L 0.32 deleterious(0) benign(0.441) TCGA-FW-A3R5-06 21 31538872 31538872 G A CLDN17 Missense_Mutation p.L22F 0.26 tolerated(0.55) benign(0.02) TCGA-FW-A3R5-06 21 31587956 31587956 C T CLDN8 Missense_Mutation p.M96I 0.26 tolerated(0.25) benign(0.016) TCGA-FW-A3R5-06 21 31588018 31588018 C T CLDN8 Missense_Mutation p.D76N 0.30 tolerated(0.08) probably_damaging(0.966) TCGA-FW-A3R5-06 21 31588019 31588019 C T CLDN8 Silent p.P75P 0.32 TCGA-FW-A3R5-06 21 31654819 31654819 G A KRTAP24-1 Silent p.T144T 0.22 TCGA-FW-A3R5-06 21 31692252 31692252 C T KRTAP26-1 Silent p.V34V 0.29 TCGA-FW-A3R5-06 21 31813035 31813035 G A KRTAP15-1 Silent p.R130R 0.26 TCGA-FW-A3R5-06 21 31864206 31864206 C T KRTAP19-3 Missense_Mutation p.G24S 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A3R5-06 21 31874201 31874201 C T KRTAP19-5 Missense_Mutation p.G70R 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 21 31913916 31913916 C T KRTAP19-6 3'UTR 0.22 TCGA-FW-A3R5-06 21 31971122 31971122 G A KRTAP6-2 Silent p.G24G 0.32 TCGA-FW-A3R5-06 21 32253688 32253688 G A KRTAP11-1 Silent p.L52L 0.24 TCGA-FW-A3R5-06 21 32410599 32410599 C T KRTAP19-8 Missense_Mutation p.G55E 0.25 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 21 32525063 32525063 C T TIAM1 Missense_Mutation p.G1086E 0.24 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 21 32526597 32526597 C T TIAM1 Missense_Mutation p.E1047K 0.61 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 32526727 32526727 G A TIAM1 Silent p.A1003A 0.25 TCGA-FW-A3R5-06 21 32526728 32526728 G A TIAM1 Missense_Mutation p.A1003V 0.25 tolerated(0.07) benign(0.025) TCGA-FW-A3R5-06 21 32554771 32554771 C T TIAM1 Missense_Mutation p.E952K 0.31 tolerated(0.18) benign(0.014) TCGA-FW-A3R5-06 21 32567576 32567576 G A TIAM1 Missense_Mutation p.H847Y 0.20 deleterious(0.03) benign(0.028) TCGA-FW-A3R5-06 21 32595760 32595760 G A TIAM1 Missense_Mutation p.R653C 0.32 deleterious(0) probably_damaging(0.921) TCGA-FW-A3R5-06 21 32595859 32595859 G A TIAM1 Missense_Mutation p.R620C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 32624481 32624481 C T TIAM1 Missense_Mutation p.E330K 0.25 deleterious(0) possibly_damaging(0.821) TCGA-FW-A3R5-06 21 33318442 33318442 C T HUNK Silent p.L235L 0.08 TCGA-FW-A3R5-06 21 33684082 33684082 G A MRAP Silent p.R98R 0.38 TCGA-FW-A3R5-06 21 33684189 33684189 G A MRAP Missense_Mutation p.G134E 0.30 tolerated(0.07) possibly_damaging(0.484) TCGA-FW-A3R5-06 21 33956525 33956525 C T TCP10L Silent p.K30K 0.30 TCGA-FW-A3R5-06 21 34038258 34038258 G A SYNJ1 Missense_Mutation p.P753S 0.23 tolerated(0.07) possibly_damaging(0.775) TCGA-FW-A3R5-06 21 34051053 34051053 G A SYNJ1 Missense_Mutation p.S510F 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 21 34113765 34113765 G A PAXBP1 Intron 0.29 TCGA-FW-A3R5-06 21 34123226 34123226 A G PAXBP1 Splice_Site p.X575_splice 0.34 TCGA-FW-A3R5-06 21 34127538 34127538 G A PAXBP1 Intron 0.15 TCGA-FW-A3R5-06 21 34128658 34128658 G A PAXBP1 Intron 0.27 TCGA-FW-A3R5-06 21 34911652 34911652 G A GART Intron 0.42 TCGA-FW-A3R5-06 21 35183432 35183432 C T ITSN1 Missense_Mutation p.P825S 0.19 tolerated(0.19) benign(0.258) TCGA-FW-A3R5-06 21 35247748 35247748 G A ITSN1 Missense_Mutation p.E1422K 0.28 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 21 35260560 35260560 G A ITSN1 Missense_Mutation p.E1708K 0.10 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 21 35467931 35467931 C T SLC5A3 Missense_Mutation p.S145L 0.16 deleterious(0) possibly_damaging(0.842) TCGA-FW-A3R5-06 21 35469468 35469468 C T SLC5A3 Silent p.F657F 0.07 TCGA-FW-A3R5-06 21 35821481 35821481 G A KCNE1 3'UTR 0.37 TCGA-FW-A3R5-06 21 35821901 35821901 G A KCNE1 Missense_Mutation p.P11L 0.23 tolerated(0.68) benign(0.048) TCGA-FW-A3R5-06 21 35890193 35890193 G A RCAN1 3'UTR 0.36 TCGA-FW-A3R5-06 21 36081686 36081686 G A CLIC6 Silent p.R583R 0.26 TCGA-FW-A3R5-06 21 36421348 36421348 G A RUNX1 5'UTR 0.29 TCGA-FW-A3R5-06 21 37412927 37412927 G A SETD4 Missense_Mutation p.P337L 0.27 tolerated(0.14) possibly_damaging(0.456) TCGA-FW-A3R5-06 21 37504920 37504920 G A CBR3 5'Flank 0.25 TCGA-FW-A3R5-06 21 37507718 37507718 C T CBR3 Silent p.F76F 0.24 TCGA-FW-A3R5-06 21 37584296 37584296 C T DOPEY2 Missense_Mutation p.L269F 0.24 deleterious(0.01) possibly_damaging(0.628) TCGA-FW-A3R5-06 21 37603235 37603235 C T DOPEY2 Missense_Mutation p.S718L 0.30 tolerated(0.31) benign(0) TCGA-FW-A3R5-06 21 37617990 37617990 C T DOPEY2 Missense_Mutation p.R1238W 0.33 deleterious(0.01) possibly_damaging(0.677) TCGA-FW-A3R5-06 21 37650510 37650510 C T DOPEY2 Silent p.A1942A 0.16 TCGA-FW-A3R5-06 21 37710234 37710234 C T MORC3 Silent p.F150F 0.32 TCGA-FW-A3R5-06 21 37741779 37741779 C T MORC3 Missense_Mutation p.L705F 0.25 tolerated(0.6) benign(0.008) TCGA-FW-A3R5-06 21 37788600 37788600 C T CHAF1B Missense_Mutation p.P539L 0.24 deleterious_low_confidence(0.01) benign(0.147) TCGA-FW-A3R5-06 21 37833526 37833526 C T CLDN14 Missense_Mutation p.M156I 0.30 deleterious(0.03) possibly_damaging(0.622) TCGA-FW-A3R5-06 21 37833570 37833570 C T CLDN14 Missense_Mutation p.D142N 0.23 tolerated(0.34) benign(0.14) TCGA-FW-A3R5-06 21 37833960 37833960 G A CLDN14 Silent p.L12L 0.20 TCGA-FW-A3R5-06 21 38098611 38098611 G A SIM2 Silent p.L245L 0.29 TCGA-FW-A3R5-06 21 38380522 38380522 C T RIPPLY3 Missense_Mutation p.P57L 0.31 tolerated(0.34) benign(0.159) TCGA-FW-A3R5-06 21 38390539 38390539 G A RIPPLY3 3'UTR 0.26 TCGA-FW-A3R5-06 21 38516844 38516844 C T TTC3 Missense_Mutation p.H598Y 0.07 deleterious(0.02) possibly_damaging(0.864) TCGA-FW-A3R5-06 21 38537884 38537884 C T TTC3 Missense_Mutation p.P1123L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 38538831 38538831 G A TTC3 Missense_Mutation p.G1439R 0.23 tolerated(0.06) benign(0.027) TCGA-FW-A3R5-06 21 38568232 38568232 A T TTC3 Missense_Mutation p.K1825M 0.39 deleterious(0.04) possibly_damaging(0.77) TCGA-FW-A3R5-06 21 38877616 38877616 C T DYRK1A Missense_Mutation p.H424Y 0.38 tolerated(0.06) benign(0.102) TCGA-FW-A3R5-06 21 38884476 38884476 C T DYRK1A Missense_Mutation p.S645F 0.28 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-FW-A3R5-06 21 38997504 38997504 C T KCNJ6 Missense_Mutation p.R410K 0.21 tolerated(0.51) benign(0.007) TCGA-FW-A3R5-06 21 38997691 38997691 C T KCNJ6 Missense_Mutation p.E348K 0.21 tolerated(0.69) probably_damaging(0.983) TCGA-FW-A3R5-06 21 39086661 39086661 C T KCNJ6 Missense_Mutation p.G267R 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 39087296 39087296 C T KCNJ6 Missense_Mutation p.R55K 0.22 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 21 39087397 39087397 G A KCNJ6 Silent p.V21V 0.43 TCGA-FW-A3R5-06 21 39213011 39213011 C T KCNJ6 Intron 0.27 TCGA-FW-A3R5-06 21 39427006 39427006 G A DSCR4 Silent p.L100L 0.29 TCGA-FW-A3R5-06 21 39492501 39492501 C T DSCR4 Missense_Mutation p.E44K 0.33 possibly_damaging(0.486) TCGA-FW-A3R5-06 21 39671263 39671263 C T KCNJ15 Missense_Mutation p.P27L 0.34 tolerated(0.33) possibly_damaging(0.656) TCGA-FW-A3R5-06 21 39671462 39671462 G A KCNJ15 Silent p.G93G 0.31 TCGA-FW-A3R5-06 21 39671554 39671554 C T KCNJ15 Missense_Mutation p.S124F 0.22 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 21 39671604 39671604 C T KCNJ15 Missense_Mutation p.H141Y 0.26 tolerated(1) benign(0.39) TCGA-FW-A3R5-06 21 39672164 39672164 C T KCNJ15 Silent p.F327F 0.26 TCGA-FW-A3R5-06 21 39672395 39672395 G A KCNJ15 3'UTR 0.32 TCGA-FW-A3R5-06 21 39755530 39755530 G A ERG Missense_Mutation p.P419L 0.24 deleterious(0.02) possibly_damaging(0.756) TCGA-FW-A3R5-06 21 39755817 39755817 G A ERG Silent p.F323F 0.21 TCGA-FW-A3R5-06 21 39817345 39817345 C T ERG Missense_Mutation p.S80N 0.27 tolerated(0.69) benign(0) TCGA-FW-A3R5-06 21 40191557 40191557 C T ETS2 Silent p.F314F 0.29 TCGA-FW-A3R5-06 21 40193564 40193564 C T ETS2 Missense_Mutation p.S377F 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 40572226 40572226 G A BRWD1 Missense_Mutation p.R1558C 0.21 tolerated(0.09) benign(0.001) TCGA-FW-A3R5-06 21 40590106 40590106 G A BRWD1 Nonsense_Mutation p.R1211* 0.22 TCGA-FW-A3R5-06 21 40648100 40648100 G A BRWD1 Missense_Mutation p.R382W 0.30 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 21 40652086 40652086 G A BRWD1 Missense_Mutation p.S307F 0.25 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 21 40765134 40765134 C T WRB Missense_Mutation p.P127S 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 40834415 40834415 C T SH3BGR Missense_Mutation p.P117S 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-FW-A3R5-06 21 41032495 41032495 C T B3GALT5 Silent p.F3F 0.18 TCGA-FW-A3R5-06 21 41033272 41033272 C T B3GALT5 Silent p.S262S 0.36 TCGA-FW-A3R5-06 21 41033329 41033329 C T B3GALT5 Silent p.I281I 0.29 TCGA-FW-A3R5-06 21 41137716 41137716 G A IGSF5 Missense_Mutation p.G119R 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 41151040 41151040 C T IGSF5 Missense_Mutation p.P248S 0.17 tolerated_low_confidence(0.06) benign(0.021) TCGA-FW-A3R5-06 21 41165464 41165464 C T IGSF5 Missense_Mutation p.T351I 0.23 tolerated(1) benign(0.036) TCGA-FW-A3R5-06 21 41301048 41301048 C T PCP4 3'UTR 0.18 TCGA-FW-A3R5-06 21 41385135 41385135 G A DSCAM Silent p.S1955S 0.62 TCGA-FW-A3R5-06 21 41385254 41385254 G A DSCAM Missense_Mutation p.P1916S 0.32 tolerated_low_confidence(0.35) benign(0.001) TCGA-FW-A3R5-06 21 41416085 41416085 C T DSCAM Nonsense_Mutation p.W1768* 0.28 TCGA-FW-A3R5-06 21 41423891 41423891 C T DSCAM Missense_Mutation p.G1727R 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 21 41427714 41427714 A - DSCAM Frame_Shift_Del p.M1658Sfs*11 0.26 TCGA-FW-A3R5-06 21 41450713 41450713 G A DSCAM Silent p.L1538L 0.27 TCGA-FW-A3R5-06 21 41450887 41450887 C T DSCAM Missense_Mutation p.E1480K 0.16 tolerated(0.07) possibly_damaging(0.497) TCGA-FW-A3R5-06 21 41452225 41452225 C T DSCAM Missense_Mutation p.G1425E 0.16 tolerated(1) benign(0.223) TCGA-FW-A3R5-06 21 41459131 41459131 C T DSCAM Missense_Mutation p.D1312N 0.30 tolerated(0.1) probably_damaging(0.93) TCGA-FW-A3R5-06 21 41465770 41465770 G A DSCAM Missense_Mutation p.S1243L 0.27 tolerated(0.71) benign(0.002) TCGA-FW-A3R5-06 21 41496173 41496173 C T DSCAM Silent p.L1215L 0.12 TCGA-FW-A3R5-06 21 41516650 41516650 C T DSCAM Silent p.K1009K 0.19 TCGA-FW-A3R5-06 21 41550893 41550893 C T DSCAM Missense_Mutation p.E970K 0.25 deleterious(0.02) benign(0) TCGA-FW-A3R5-06 21 41559882 41559882 G A DSCAM Silent p.F862F 0.24 TCGA-FW-A3R5-06 21 41648155 41648155 C T DSCAM Missense_Mutation p.R742Q 0.40 deleterious(0.01) possibly_damaging(0.745) TCGA-FW-A3R5-06 21 41710035 41710035 G A DSCAM Silent p.T592T 0.30 TCGA-FW-A3R5-06 21 41710281 41710281 C T DSCAM Missense_Mutation p.M510I 0.21 deleterious(0.01) possibly_damaging(0.876) TCGA-FW-A3R5-06 21 41711060 41711060 C T DSCAM Missense_Mutation p.R498Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 21 41711165 41711165 C T DSCAM Missense_Mutation p.G463E 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 21 41711233 41711233 C T DSCAM Nonsense_Mutation p.W440* 0.29 TCGA-FW-A3R5-06 21 41725472 41725472 G A DSCAM Missense_Mutation p.P285L 0.22 tolerated(0.38) benign(0.02) TCGA-FW-A3R5-06 21 41725476 41725476 G A DSCAM Missense_Mutation p.R284C 0.24 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 21 41725620 41725620 C T DSCAM Missense_Mutation p.A236T 0.37 tolerated(0.14) benign(0.403) TCGA-FW-A3R5-06 21 42080468 42080468 G A DSCAM Silent p.F91F 0.26 TCGA-FW-A3R5-06 21 42647492 42647492 C T BACE2 Missense_Mutation p.P500S 0.15 tolerated(0.55) benign(0.007) TCGA-FW-A3R5-06 21 42694776 42694776 G A FAM3B Intron 0.39 TCGA-FW-A3R5-06 21 42694777 42694777 G A FAM3B Intron 0.37 TCGA-FW-A3R5-06 21 42778721 42778721 G A MX2 Missense_Mutation p.M567I 0.26 tolerated(0.28) benign(0.023) TCGA-FW-A3R5-06 21 42780032 42780032 C T MX2 Missense_Mutation p.R674C 0.54 deleterious(0.03) possibly_damaging(0.744) TCGA-FW-A3R5-06 21 42815746 42815746 C T MX1 Missense_Mutation p.P321S 0.23 deleterious(0.01) possibly_damaging(0.688) TCGA-FW-A3R5-06 21 42830653 42830653 G A MX1 Missense_Mutation p.A653T 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 42866339 42866339 G A TMPRSS2 Missense_Mutation p.S98F 0.21 deleterious(0) probably_damaging(0.912) TCGA-FW-A3R5-06 21 43259928 43259928 G A PRDM15 Silent p.S591S 0.23 TCGA-FW-A3R5-06 21 43274922 43274922 G A PRDM15 Silent p.F463F 0.22 TCGA-FW-A3R5-06 21 43321774 43321774 G A C2CD2 Missense_Mutation p.S506L 0.21 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 21 43327114 43327114 G A C2CD2 Silent p.S435S 0.14 TCGA-FW-A3R5-06 21 43332497 43332497 G A C2CD2 Silent p.F299F 0.50 TCGA-FW-A3R5-06 21 43411770 43411770 G A ZBTB21 Missense_Mutation p.P812L 0.30 deleterious(0.01) benign(0.097) TCGA-FW-A3R5-06 21 43413171 43413171 G A ZBTB21 Missense_Mutation p.S345L 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 43496117 43496117 A T UMODL1 Missense_Mutation p.K27I 0.31 deleterious(0) possibly_damaging(0.844) TCGA-FW-A3R5-06 21 43505518 43505518 C T UMODL1 Missense_Mutation p.S200F 0.15 deleterious(0) benign(0.027) TCGA-FW-A3R5-06 21 43522383 43522383 C T UMODL1 Missense_Mutation p.H432Y 0.24 tolerated(0.97) possibly_damaging(0.754) TCGA-FW-A3R5-06 21 43524025 43524025 G A C21orf128 Missense_Mutation p.P70S 0.28 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FW-A3R5-06 21 43547288 43547288 G A UMODL1 Missense_Mutation p.E1284K 0.32 tolerated(0.08) possibly_damaging(0.836) TCGA-FW-A3R5-06 21 43547321 43547321 G A UMODL1 Missense_Mutation p.D1295N 0.20 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 21 43708058 43708058 C T ABCG1 Missense_Mutation p.R345W 0.17 deleterious(0) benign(0.001) TCGA-FW-A3R5-06 21 43716295 43716295 C T ABCG1 Silent p.I610I 0.28 TCGA-FW-A3R5-06 21 43802323 43802323 C T TMPRSS3 Nonsense_Mutation p.W268* 0.27 TCGA-FW-A3R5-06 21 43833575 43833575 C T UBASH3A Silent p.L204L 0.26 TCGA-FW-A3R5-06 21 43913099 43913099 C T RSPH1 Missense_Mutation p.E49K 0.18 deleterious(0.05) possibly_damaging(0.766) TCGA-FW-A3R5-06 21 43916397 43916397 C T RSPH1 5'UTR 0.23 TCGA-FW-A3R5-06 21 43959657 43959657 A T SLC37A1 Missense_Mutation p.Y129F 0.24 tolerated(0.85) benign(0.069) TCGA-FW-A3R5-06 21 43982259 43982259 C T SLC37A1 Silent p.P351P 0.22 TCGA-FW-A3R5-06 21 44189219 44189219 G A PDE9A Missense_Mutation p.G515E 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 21 44270157 44270157 G A WDR4 3'UTR 0.31 TCGA-FW-A3R5-06 21 44323749 44323749 C T NDUFV3 Silent p.T209T 0.10 TCGA-FW-A3R5-06 21 44323870 44323870 C T NDUFV3 Missense_Mutation p.P250S 0.10 tolerated(0.25) benign(0.112) TCGA-FW-A3R5-06 21 44590729 44590729 G A CRYAA Missense_Mutation p.G98R 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 44592413 44592413 C T CRYAA 3'UTR 0.33 TCGA-FW-A3R5-06 21 44949807 44949807 G A HSF2BP Missense_Mutation p.L278F 0.33 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 21 45012194 45012194 G A HSF2BP Silent p.S236S 0.26 TCGA-FW-A3R5-06 21 45152423 45152423 C T PDXK Intron 0.26 TCGA-FW-A3R5-06 21 45472270 45472270 C T TRAPPC10 Missense_Mutation p.A132V 0.19 tolerated(0.58) benign(0.231) TCGA-FW-A3R5-06 21 45518302 45518302 C T TRAPPC10 Missense_Mutation p.S1078F 0.25 deleterious(0.01) possibly_damaging(0.477) TCGA-FW-A3R5-06 21 45670699 45670699 G A DNMT3L Silent p.F301F 0.24 TCGA-FW-A3R5-06 21 45670725 45670725 C T DNMT3L Missense_Mutation p.E293K 0.23 tolerated(0.07) benign(0.207) TCGA-FW-A3R5-06 21 45671561 45671561 G A DNMT3L Silent p.F238F 0.20 TCGA-FW-A3R5-06 21 45678478 45678478 G A DNMT3L Silent p.S148S 0.16 TCGA-FW-A3R5-06 21 45679538 45679538 C T DNMT3L Missense_Mutation p.G70R 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 45681059 45681059 G A DNMT3L Silent p.S28S 0.29 TCGA-FW-A3R5-06 21 45706614 45706614 G A AIRE Missense_Mutation p.D103N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 21 45706897 45706897 C T AIRE Missense_Mutation p.P115L 0.27 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 21 45708297 45708297 G A AIRE Missense_Mutation p.R203Q 0.37 tolerated(0.35) benign(0.23) TCGA-FW-A3R5-06 21 45709910 45709910 C T AIRE Missense_Mutation p.P280S 0.24 tolerated(0.08) benign(0.015) TCGA-FW-A3R5-06 21 45711070 45711070 C T AIRE Silent p.S324S 0.23 TCGA-FW-A3R5-06 21 45711088 45711088 C T AIRE Silent p.I330I 0.24 TCGA-FW-A3R5-06 21 45712900 45712900 G A AIRE Missense_Mutation p.G374R 0.12 tolerated(0.12) possibly_damaging(0.729) TCGA-FW-A3R5-06 21 45798932 45798932 C T TRPM2 Missense_Mutation p.S356L 0.34 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 21 45799080 45799080 G A TRPM2 Silent p.K405K 0.30 TCGA-FW-A3R5-06 21 45802612 45802612 C T TRPM2 Silent p.I409I 0.19 TCGA-FW-A3R5-06 21 45810908 45810908 G A TRPM2 Silent p.K480K 0.25 TCGA-FW-A3R5-06 21 45821601 45821601 C T TRPM2 Missense_Mutation p.R787C 0.28 deleterious(0.02) benign(0.127) TCGA-FW-A3R5-06 21 45821719 45821719 C T TRPM2 Missense_Mutation p.S826F 0.30 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 21 45837921 45837921 C T TRPM2 Silent p.L1086L 0.39 TCGA-FW-A3R5-06 21 45844734 45844734 G A TRPM2 Splice_Site p.X1184_splice 0.32 TCGA-FW-A3R5-06 21 45860744 45860744 C T TRPM2 Missense_Mutation p.H1448Y 0.32 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 21 45861601 45861601 C T TRPM2 Silent p.A1471A 0.16 TCGA-FW-A3R5-06 21 45877172 45877172 C T LRRC3 Silent p.F215F 0.09 TCGA-FW-A3R5-06 21 45877193 45877193 C T LRRC3 Silent p.V222V 0.29 TCGA-FW-A3R5-06 21 45929264 45929264 G A TSPEAR Silent p.F524F 0.20 TCGA-FW-A3R5-06 21 45941801 45941801 G A TSPEAR Missense_Mutation p.L511F 0.26 deleterious(0.03) possibly_damaging(0.837) TCGA-FW-A3R5-06 21 45945563 45945563 A G TSPEAR Missense_Mutation p.F437L 0.28 deleterious(0.03) possibly_damaging(0.899) TCGA-FW-A3R5-06 21 45945569 45945569 C T TSPEAR Missense_Mutation p.E435K 0.29 tolerated(0.09) possibly_damaging(0.627) TCGA-FW-A3R5-06 21 45947202 45947202 G A TSPEAR Silent p.A374A 0.14 TCGA-FW-A3R5-06 21 45949718 45949718 C T TSPEAR Silent p.G251G 0.33 TCGA-FW-A3R5-06 21 45959264 45959264 G A KRTAP10-1 Missense_Mutation p.S257F 0.26 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 21 45959603 45959603 G A KRTAP10-1 Missense_Mutation p.P144L 0.26 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 21 45971094 45971094 G A KRTAP10-2 Missense_Mutation p.S83F 0.08 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 21 45978416 45978416 G A KRTAP10-3 Silent p.A61A 0.30 TCGA-FW-A3R5-06 21 45993752 45993752 C T KRTAP10-4 Silent p.P39P 0.10 TCGA-FW-A3R5-06 21 46011174 46011174 C T KRTAP10-6 3'UTR 0.28 TCGA-FW-A3R5-06 21 46011243 46011243 G A KRTAP10-6 3'UTR 0.40 TCGA-FW-A3R5-06 21 46021459 46021459 C T KRTAP10-7 Missense_Mutation p.S313F 0.08 tolerated(0.37) unknown(0) TCGA-FW-A3R5-06 21 46021535 46021535 C T KRTAP10-7 Silent p.S338S 0.24 TCGA-FW-A3R5-06 21 46032136 46032136 C T KRTAP10-8 Missense_Mutation p.S40F 0.11 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 21 46032182 46032182 C T KRTAP10-8 Silent p.S55S 0.08 TCGA-FW-A3R5-06 21 46047061 46047061 C T KRTAP10-9 5'UTR 0.26 TCGA-FW-A3R5-06 21 46047149 46047149 G A KRTAP10-9 Missense_Mutation p.D21N 0.33 tolerated(0.19) unknown(0) TCGA-FW-A3R5-06 21 46047502 46047502 G A KRTAP10-9 Silent p.P138P 0.13 TCGA-FW-A3R5-06 21 46047788 46047788 C T KRTAP10-9 Missense_Mutation p.L234F 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-FW-A3R5-06 21 46057304 46057304 C T KRTAP10-10 5'UTR 0.10 TCGA-FW-A3R5-06 21 46066364 46066364 C T KRTAP10-11 5'UTR 0.27 TCGA-FW-A3R5-06 21 46066852 46066852 C T KRTAP10-11 Silent p.S159S 0.19 TCGA-FW-A3R5-06 21 46066875 46066875 C T KRTAP10-11 Missense_Mutation p.S167L 0.20 tolerated(0.18) unknown(0) TCGA-FW-A3R5-06 21 46074281 46074281 G A KRTAP12-4 Missense_Mutation p.S84F 0.30 deleterious(0) probably_damaging(0.919) TCGA-FW-A3R5-06 21 46086676 46086676 G A KRTAP12-2 Missense_Mutation p.S43F 0.26 tolerated(0.08) benign(0.04) TCGA-FW-A3R5-06 21 46086747 46086747 G A KRTAP12-2 Silent p.P19P 0.27 TCGA-FW-A3R5-06 21 46086784 46086784 G A KRTAP12-2 Missense_Mutation p.S7F 0.29 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 21 46102014 46102014 C T KRTAP12-1 Missense_Mutation p.G9S 0.29 tolerated(0.47) probably_damaging(0.959) TCGA-FW-A3R5-06 21 46117623 46117623 C T KRTAP10-12 Silent p.A169A 0.18 TCGA-FW-A3R5-06 21 46117708 46117708 C T KRTAP10-12 Missense_Mutation p.L198F 0.21 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 21 46310067 46310067 C T ITGB2 Missense_Mutation p.G495R 0.31 tolerated(0.08) benign(0.152) TCGA-FW-A3R5-06 21 46326873 46326873 C T ITGB2 Silent p.Q95Q 0.28 TCGA-FW-A3R5-06 21 46326989 46326989 G A ITGB2 Missense_Mutation p.P57S 0.24 tolerated(0.09) probably_damaging(1) TCGA-FW-A3R5-06 21 46554683 46554683 G A ADARB1 Intron 0.17 TCGA-FW-A3R5-06 21 46888190 46888190 C T COL18A1 Silent p.L227L 0.29 TCGA-FW-A3R5-06 21 46888191 46888191 C T COL18A1 Missense_Mutation p.L228F 0.28 unknown(0) TCGA-FW-A3R5-06 21 46950876 46950876 G A SLC19A1 Missense_Mutation p.T320M 0.29 tolerated(0.06) possibly_damaging(0.611) TCGA-FW-A3R5-06 21 47337533 47337533 C T PCBP3 Missense_Mutation p.P236L 0.31 deleterious(0.01) probably_damaging(0.91) TCGA-FW-A3R5-06 21 47350726 47350726 G A PCBP3 Missense_Mutation p.E275K 0.23 tolerated(0.72) benign(0.001) TCGA-FW-A3R5-06 21 47406492 47406492 C T COL6A1 Missense_Mutation p.P161S 0.25 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 21 47422304 47422304 C T COL6A1 Missense_Mutation p.P747S 0.36 tolerated(0.22) benign(0.426) TCGA-FW-A3R5-06 21 47422305 47422305 C T COL6A1 Missense_Mutation p.P747L 0.40 tolerated(0.09) benign(0.344) TCGA-FW-A3R5-06 21 47423320 47423320 C T COL6A1 Missense_Mutation p.P827L 0.10 deleterious(0.04) possibly_damaging(0.551) TCGA-FW-A3R5-06 21 47424028 47424028 C T COL6A1 3'UTR 0.12 TCGA-FW-A3R5-06 21 47532341 47532341 C T COL6A2 Silent p.F188F 0.19 TCGA-FW-A3R5-06 21 47532724 47532724 G A COL6A2 Missense_Mutation p.E241K 0.15 tolerated(0.37) benign(0.167) TCGA-FW-A3R5-06 21 47538583 47538583 G A COL6A2 Missense_Mutation p.G391E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 21 47545985 47545985 C A COL6A2 Silent p.V752V 0.27 TCGA-FW-A3R5-06 21 47636337 47636337 G A LSS Missense_Mutation p.A250V 0.18 tolerated(0.2) benign(0.194) TCGA-FW-A3R5-06 21 47692738 47692738 G A MCM3AP Silent p.I734I 0.32 TCGA-FW-A3R5-06 21 47786986 47786986 C T PCNT Missense_Mutation p.H1033Y 0.25 benign(0.001) TCGA-FW-A3R5-06 21 47981665 47981665 C T DIP2A Missense_Mutation p.R1346C 0.20 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 22 16256536 16256536 C T POTEH 3'UTR 0.14 TCGA-FW-A3R5-06 22 16256542 16256542 C T POTEH 3'UTR 0.11 TCGA-FW-A3R5-06 22 16256617 16256617 C T POTEH 3'UTR 0.12 TCGA-FW-A3R5-06 22 16256675 16256675 A T POTEH Intron 0.15 TCGA-FW-A3R5-06 22 16287329 16287329 C T POTEH Nonsense_Mutation p.W186* 0.16 TCGA-FW-A3R5-06 22 16287568 16287568 G A POTEH Silent p.F106F 0.14 TCGA-FW-A3R5-06 22 16287591 16287591 C T POTEH Missense_Mutation p.G99S 0.17 deleterious_low_confidence(0.03) benign(0.317) TCGA-FW-A3R5-06 22 16287627 16287627 C T POTEH Missense_Mutation p.D87N 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.776) TCGA-FW-A3R5-06 22 16287712 16287712 C T POTEH Silent p.R58R 0.15 TCGA-FW-A3R5-06 22 16287790 16287790 G A POTEH Silent p.F32F 0.25 TCGA-FW-A3R5-06 22 16449127 16449127 G A OR11H1 Silent p.F226F 0.29 TCGA-FW-A3R5-06 22 16449274 16449274 G A OR11H1 Silent p.L177L 0.30 TCGA-FW-A3R5-06 22 17071733 17071733 C T CCT8L2 3'UTR 0.36 TCGA-FW-A3R5-06 22 17071818 17071818 C T CCT8L2 Silent p.K541K 0.19 TCGA-FW-A3R5-06 22 17072095 17072095 G A CCT8L2 Missense_Mutation p.P449L 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 17072199 17072199 G A CCT8L2 Silent p.A414A 0.29 TCGA-FW-A3R5-06 22 17072209 17072209 C T CCT8L2 Missense_Mutation p.G411E 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 17072451 17072451 C T CCT8L2 Silent p.L330L 0.25 TCGA-FW-A3R5-06 22 17072540 17072540 C T CCT8L2 Missense_Mutation p.E301K 0.32 tolerated(0.1) benign(0.016) TCGA-FW-A3R5-06 22 17072667 17072667 C T CCT8L2 Silent p.T258T 0.30 TCGA-FW-A3R5-06 22 17072763 17072763 C T CCT8L2 Silent p.G226G 0.11 TCGA-FW-A3R5-06 22 17072864 17072864 C T CCT8L2 Missense_Mutation p.E193K 0.28 tolerated(0.07) probably_damaging(0.927) TCGA-FW-A3R5-06 22 17073116 17073116 C T CCT8L2 Missense_Mutation p.V109I 0.23 tolerated(0.19) benign(0.064) TCGA-FW-A3R5-06 22 17073120 17073120 G A CCT8L2 Silent p.F107F 0.24 TCGA-FW-A3R5-06 22 17119552 17119552 C T TPTEP1 RNA 0.22 TCGA-FW-A3R5-06 22 17119611 17119611 C T TPTEP1 RNA 0.30 TCGA-FW-A3R5-06 22 17308721 17308721 C T HSFY1P1 RNA 0.23 TCGA-FW-A3R5-06 22 17444715 17444715 G A GAB4 Missense_Mutation p.P494L 0.23 deleterious(0.05) benign(0) TCGA-FW-A3R5-06 22 17444716 17444716 G A GAB4 Missense_Mutation p.P494S 0.23 deleterious(0.03) benign(0.001) TCGA-FW-A3R5-06 22 17446114 17446114 C T GAB4 Missense_Mutation p.E445K 0.18 deleterious(0) benign(0.019) TCGA-FW-A3R5-06 22 17446124 17446124 C A GAB4 Missense_Mutation p.R441S 0.21 tolerated(0.85) benign(0.009) TCGA-FW-A3R5-06 22 17446125 17446125 C T GAB4 Missense_Mutation p.R441K 0.21 tolerated(0.1) benign(0.018) TCGA-FW-A3R5-06 22 17468993 17468993 G A GAB4 Silent p.C181C 0.38 TCGA-FW-A3R5-06 22 17488851 17488851 C T GAB4 Missense_Mutation p.E52K 0.29 deleterious(0.02) possibly_damaging(0.635) TCGA-FW-A3R5-06 22 17578719 17578719 C T IL17RA Nonsense_Mutation p.R66* 0.29 TCGA-FW-A3R5-06 22 17624020 17624020 G A CECR5 Missense_Mutation p.P180L 0.16 tolerated(0.14) benign(0.002) TCGA-FW-A3R5-06 22 17630511 17630511 G A CECR5 Missense_Mutation p.P84L 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-FW-A3R5-06 22 17990868 17990868 G A CECR2 Silent p.K257K 0.07 TCGA-FW-A3R5-06 22 18021541 18021541 C T CECR2 Missense_Mutation p.P612L 0.41 deleterious(0) possibly_damaging(0.474) TCGA-FW-A3R5-06 22 18070755 18070755 G A SLC25A18 Missense_Mutation p.E214K 0.31 tolerated(0.79) benign(0.183) TCGA-FW-A3R5-06 22 18300136 18300136 G A MICAL3 Missense_Mutation p.P1764L 0.24 probably_damaging(0.998) TCGA-FW-A3R5-06 22 18300147 18300147 G A MICAL3 Silent p.C1760C 0.48 TCGA-FW-A3R5-06 22 18347479 18347479 G A MICAL3 Intron 0.23 TCGA-FW-A3R5-06 22 18384706 18384706 G A MICAL3 Missense_Mutation p.P210L 0.33 probably_damaging(0.96) TCGA-FW-A3R5-06 22 18562684 18562684 C T PEX26 Missense_Mutation p.A92V 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 18769701 18769701 C T GGT3P RNA 0.12 TCGA-FW-A3R5-06 22 18844988 18844988 C T BCRP7 Intron 0.19 TCGA-FW-A3R5-06 22 18897764 18897764 G A DGCR6 Silent p.A117A 0.21 TCGA-FW-A3R5-06 22 18909852 18909852 G A PRODH Silent p.T305T 0.17 TCGA-FW-A3R5-06 22 19121621 19121621 G A DGCR14 3'UTR 0.36 TCGA-FW-A3R5-06 22 19125809 19125809 G A DGCR14 Missense_Mutation p.P282S 0.26 tolerated(0.17) probably_damaging(0.999) TCGA-FW-A3R5-06 22 19178917 19178917 G A CLTCL1 Silent p.L1408L 0.35 TCGA-FW-A3R5-06 22 19375254 19375254 G A HIRA Missense_Mutation p.P365S 0.27 tolerated(0.11) possibly_damaging(0.796) TCGA-FW-A3R5-06 22 19506390 19506390 C T CDC45 Missense_Mutation p.R586W 0.24 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 22 19707966 19707966 C T SEPT5 Silent p.P162P 0.26 TCGA-FW-A3R5-06 22 19709226 19709226 C T SEPT5 Missense_Mutation p.R261W 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 19752564 19752564 C T TBX1 Silent p.A256A 0.26 TCGA-FW-A3R5-06 22 19838896 19838896 G A C22orf29 Missense_Mutation p.P297S 0.36 tolerated(0.09) benign(0.342) TCGA-FW-A3R5-06 22 19839790 19839790 G A C22orf29 5'UTR 0.23 TCGA-FW-A3R5-06 22 19865928 19865928 G A TXNRD2 Silent p.F436F 0.32 TCGA-FW-A3R5-06 22 20043519 20043519 C T TANGO2 Missense_Mutation p.P145L 0.37 deleterious(0.01) possibly_damaging(0.656) TCGA-FW-A3R5-06 22 20049180 20049180 C T TANGO2 Silent p.L193L 0.27 TCGA-FW-A3R5-06 22 20073517 20073517 C T DGCR8 Missense_Mutation p.P11S 0.35 deleterious_low_confidence(0.03) benign(0.058) TCGA-FW-A3R5-06 22 20129011 20129011 C T ZDHHC8 Silent p.F361F 0.22 TCGA-FW-A3R5-06 22 20130613 20130613 C T ZDHHC8 Missense_Mutation p.S487L 0.28 deleterious(0.02) benign(0.02) TCGA-FW-A3R5-06 22 20130761 20130761 C T ZDHHC8 Silent p.P536P 0.34 TCGA-FW-A3R5-06 22 20458239 20458239 G A RIMBP3 Silent p.P1021P 0.35 TCGA-FW-A3R5-06 22 20760277 20760277 C T ZNF74 Silent p.S318S 0.31 TCGA-FW-A3R5-06 22 20760771 20760771 C T ZNF74 Missense_Mutation p.S483F 0.21 tolerated(0.49) probably_damaging(0.999) TCGA-FW-A3R5-06 22 20760871 20760871 C T ZNF74 Silent p.I516I 0.26 TCGA-FW-A3R5-06 22 20761100 20761100 C T ZNF74 Missense_Mutation p.L593F 0.10 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 22 20780149 20780149 G A SCARF2 Missense_Mutation p.S710L 0.36 deleterious(0.05) possibly_damaging(0.838) TCGA-FW-A3R5-06 22 20819666 20819666 G A KLHL22 Silent p.Y197Y 0.35 TCGA-FW-A3R5-06 22 20825709 20825709 G A KLHL22 Silent p.F107F 0.34 TCGA-FW-A3R5-06 22 20941044 20941044 C T MED15 3'UTR 0.25 TCGA-FW-A3R5-06 22 20977088 20977088 C T SMPD4P1 RNA 0.47 TCGA-FW-A3R5-06 22 21141196 21141196 G A SERPIND1 Missense_Mutation p.E448K 0.27 tolerated(0.12) possibly_damaging(0.878) TCGA-FW-A3R5-06 22 21157582 21157582 G A PI4KA Silent p.F496F 0.27 TCGA-FW-A3R5-06 22 21165309 21165309 G A PI4KA Silent p.I339I 0.28 TCGA-FW-A3R5-06 22 21328398 21328398 C T AIFM3 Silent p.C134C 0.28 TCGA-FW-A3R5-06 22 21329034 21329034 G A AIFM3 Missense_Mutation p.G217S 0.12 deleterious(0.05) probably_damaging(0.992) TCGA-FW-A3R5-06 22 21333929 21333929 C T AIFM3 Silent p.G530G 0.26 TCGA-FW-A3R5-06 22 21348432 21348432 C T LZTR1 Missense_Mutation p.P497S 0.36 tolerated(0.8) benign(0.005) TCGA-FW-A3R5-06 22 21348460 21348460 C T LZTR1 Missense_Mutation p.P506L 0.29 tolerated(0.25) benign(0.002) TCGA-FW-A3R5-06 22 21385560 21385560 G A SLC7A4 Missense_Mutation p.S181F 0.37 deleterious(0.05) possibly_damaging(0.878) TCGA-FW-A3R5-06 22 21800537 21800537 C T HIC2 Silent p.F451F 0.32 TCGA-FW-A3R5-06 22 21800647 21800647 C T HIC2 Missense_Mutation p.A488V 0.18 tolerated(0.24) possibly_damaging(0.739) TCGA-FW-A3R5-06 22 21800898 21800898 C T HIC2 Missense_Mutation p.R572C 0.17 deleterious(0) probably_damaging(0.965) TCGA-FW-A3R5-06 22 21841891 21841891 G A PI4KAP2 RNA 0.21 TCGA-FW-A3R5-06 22 21989023 21989023 C T CCDC116 Missense_Mutation p.S224L 0.28 deleterious(0.02) benign(0.086) TCGA-FW-A3R5-06 22 21998344 21998344 C T SDF2L1 Silent p.I182I 0.28 TCGA-FW-A3R5-06 22 21998345 21998345 C T SDF2L1 Missense_Mutation p.R183C 0.31 deleterious(0.02) probably_damaging(0.976) TCGA-FW-A3R5-06 22 22039149 22039149 C T PPIL2 Silent p.L221L 0.38 TCGA-FW-A3R5-06 22 22123583 22123583 G A MAPK1 Silent p.F331F 0.33 TCGA-FW-A3R5-06 22 22311705 22311705 G A TOP3B Silent p.L790L 0.16 TCGA-FW-A3R5-06 22 22312906 22312906 G A TOP3B Missense_Mutation p.P689S 0.19 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 22 22385778 22385778 C T IGLV4-69 Silent p.S89S 0.28 TCGA-FW-A3R5-06 22 22453567 22453567 C T IGLV8-61 Nonsense_Mutation p.Q105* 0.24 TCGA-FW-A3R5-06 22 22556304 22556304 C T IGLV11-55 Missense_Mutation p.P40S 0.39 tolerated(0.28) benign(0.011) TCGA-FW-A3R5-06 22 22697996 22697996 G A IGLV9-49 Missense_Mutation p.R95Q 0.18 tolerated(0.1) benign(0.029) TCGA-FW-A3R5-06 22 22707693 22707693 C T IGLV5-48 Missense_Mutation p.S94L 0.32 deleterious(0.01) benign(0.288) TCGA-FW-A3R5-06 22 22712610 22712610 C T IGLV1-47 3'Flank 0.09 TCGA-FW-A3R5-06 22 22735275 22735275 C T IGLV1-44 Silent p.T9T 0.31 TCGA-FW-A3R5-06 22 22749636 22749636 C T IGLV7-43 Missense_Mutation p.P54S 0.20 tolerated(0.17) probably_damaging(0.916) TCGA-FW-A3R5-06 22 22749721 22749721 G A IGLV7-43 Missense_Mutation p.R82Q 0.44 deleterious(0.03) benign(0.145) TCGA-FW-A3R5-06 22 22869096 22869096 C T ZNF280A Missense_Mutation p.D287N 0.08 tolerated(0.15) benign(0.272) TCGA-FW-A3R5-06 22 22890763 22890763 G A PRAME Missense_Mutation p.S419F 0.25 deleterious(0.02) possibly_damaging(0.781) TCGA-FW-A3R5-06 22 22890774 22890774 C T PRAME Silent p.G415G 0.25 TCGA-FW-A3R5-06 22 22892237 22892237 G A PRAME Silent p.F288F 0.29 TCGA-FW-A3R5-06 22 22892266 22892266 C T PRAME Missense_Mutation p.E279K 0.29 tolerated(0.13) benign(0.053) TCGA-FW-A3R5-06 22 22893441 22893441 C T PRAME Missense_Mutation p.G31E 0.14 tolerated(0.1) possibly_damaging(0.687) TCGA-FW-A3R5-06 22 22930884 22930884 C T IGLV2-33 Missense_Mutation p.P27S 0.31 tolerated_low_confidence(0.46) benign(0.031) TCGA-FW-A3R5-06 22 22989341 22989341 C T GGTLC2 Silent p.F98F 0.30 TCGA-FW-A3R5-06 22 22989517 22989517 G A GGTLC2 Intron 0.24 TCGA-FW-A3R5-06 22 23011177 23011177 C T IGLV3-27 Silent p.F80F 0.30 TCGA-FW-A3R5-06 22 23063518 23063518 G A IGLV3-19 Silent p.G75G 0.32 TCGA-FW-A3R5-06 22 23077472 23077472 C T IGLV2-18 Silent p.F83F 0.31 TCGA-FW-A3R5-06 22 23090244 23090244 C T IGLV3-16 Silent p.F61F 0.09 TCGA-FW-A3R5-06 22 23114868 23114868 G A IGLV3-12 Missense_Mutation p.G47E 0.16 tolerated(0.07) possibly_damaging(0.533) TCGA-FW-A3R5-06 22 23135302 23135302 C T IGLV2-11 Missense_Mutation p.S55F 0.30 deleterious_low_confidence(0.01) benign(0.312) TCGA-FW-A3R5-06 22 23162132 23162132 G A IGLV3-9 Silent p.G75G 0.33 TCGA-FW-A3R5-06 22 23162204 23162204 G A IGLV3-9 Silent p.G99G 0.26 TCGA-FW-A3R5-06 22 23165508 23165508 C T IGLV2-8 Missense_Mutation p.P27S 0.27 tolerated_low_confidence(0.58) benign(0.02) TCGA-FW-A3R5-06 22 23223458 23223458 C T IGLV3-1 Silent p.I76I 0.32 TCGA-FW-A3R5-06 22 23264783 23264783 C T IGLC7 Missense_Mutation p.P7S 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-FW-A3R5-06 22 23265006 23265006 C T IGLC7 Missense_Mutation p.S81F 0.16 deleterious_low_confidence(0) possibly_damaging(0.596) TCGA-FW-A3R5-06 22 23406208 23406208 C T RTDR1 Silent p.L175L 0.18 TCGA-FW-A3R5-06 22 23438219 23438219 C T GNAZ Missense_Mutation p.P113S 0.23 tolerated(0.92) benign(0.175) TCGA-FW-A3R5-06 22 23742318 23742318 G A ZDHHC8P1 RNA 0.21 TCGA-FW-A3R5-06 22 23742556 23742556 G A ZDHHC8P1 RNA 0.30 TCGA-FW-A3R5-06 22 23956368 23956368 G A C22orf43 Missense_Mutation p.S192L 0.13 deleterious_low_confidence(0.04) benign(0.052) TCGA-FW-A3R5-06 22 23974157 23974157 C T C22orf43 Silent p.G18G 0.17 TCGA-FW-A3R5-06 22 24036125 24036125 G A RGL4 Silent p.R292R 0.31 TCGA-FW-A3R5-06 22 24108177 24108177 A C CHCHD10 3'UTR 0.35 TCGA-FW-A3R5-06 22 24121450 24121450 C T MMP11 Missense_Mutation p.A62V 0.39 tolerated_low_confidence(0.31) possibly_damaging(0.483) TCGA-FW-A3R5-06 22 24123043 24123043 C T MMP11 Intron 0.14 TCGA-FW-A3R5-06 22 24125674 24125674 C T AP000349.1 Missense_Mutation p.G158R 0.29 unknown(0) TCGA-FW-A3R5-06 22 24125836 24125836 G A AP000349.1 Nonsense_Mutation p.Q104* 0.23 TCGA-FW-A3R5-06 22 24210737 24210737 C T AP000350.10 Silent p.L29L 0.15 TCGA-FW-A3R5-06 22 24225082 24225082 C T SLC2A11 Intron 0.31 TCGA-FW-A3R5-06 22 24226910 24226910 C T SLC2A11 Silent p.F462F 0.26 TCGA-FW-A3R5-06 22 24561588 24561588 C T CABIN1 Silent p.L1667L 0.30 TCGA-FW-A3R5-06 22 24579067 24579067 G A SUSD2 Missense_Mutation p.G40E 0.10 tolerated(0.22) benign(0.019) TCGA-FW-A3R5-06 22 24581994 24581994 C T SUSD2 Silent p.F450F 0.30 TCGA-FW-A3R5-06 22 24583561 24583561 C T SUSD2 Silent p.S638S 0.20 TCGA-FW-A3R5-06 22 24621549 24621549 C T GGT5 Missense_Mutation p.R434Q 0.20 deleterious(0) possibly_damaging(0.658) TCGA-FW-A3R5-06 22 24640717 24640717 G A GGT5 5'UTR 0.50 TCGA-FW-A3R5-06 22 24659603 24659603 C T POM121L9P RNA 0.27 TCGA-FW-A3R5-06 22 24896103 24896103 G A UPB1 Missense_Mutation p.E45K 0.34 tolerated(0.49) benign(0.001) TCGA-FW-A3R5-06 22 24898487 24898487 C T UPB1 Intron 0.30 TCGA-FW-A3R5-06 22 25023364 25023364 C T GGT1 Intron 0.25 TCGA-FW-A3R5-06 22 25023478 25023478 C T GGT1 Missense_Mutation p.S367F 0.09 deleterious(0.01) possibly_damaging(0.615) TCGA-FW-A3R5-06 22 25023490 25023490 C T GGT1 Missense_Mutation p.P371L 0.40 deleterious(0.03) benign(0.199) TCGA-FW-A3R5-06 22 25023491 25023491 C T GGT1 Silent p.P371P 0.38 TCGA-FW-A3R5-06 22 25024682 25024682 C T GGT1 Missense_Mutation p.T529I 0.15 tolerated(0.13) benign(0.009) TCGA-FW-A3R5-06 22 25145731 25145731 C T PIWIL3 Missense_Mutation p.R382K 0.25 tolerated(1) benign(0.022) TCGA-FW-A3R5-06 22 25150165 25150165 G A PIWIL3 Missense_Mutation p.L265F 0.18 deleterious(0) benign(0.321) TCGA-FW-A3R5-06 22 25150797 25150797 G A PIWIL3 Missense_Mutation p.R243C 0.24 deleterious(0) possibly_damaging(0.571) TCGA-FW-A3R5-06 22 25255686 25255686 G A SGSM1 Missense_Mutation p.D269N 0.39 deleterious(0.01) probably_damaging(0.933) TCGA-FW-A3R5-06 22 25255689 25255689 G A SGSM1 Missense_Mutation p.D270N 0.26 tolerated(0.06) probably_damaging(0.922) TCGA-FW-A3R5-06 22 25264389 25264389 G A SGSM1 Silent p.Q347Q 0.31 TCGA-FW-A3R5-06 22 25293954 25293954 G A SGSM1 Missense_Mutation p.D735N 0.31 deleterious(0.03) benign(0.027) TCGA-FW-A3R5-06 22 25294042 25294042 C T SGSM1 Missense_Mutation p.S764F 0.11 deleterious(0.02) possibly_damaging(0.862) TCGA-FW-A3R5-06 22 25294157 25294157 G A SGSM1 Silent p.T802T 0.17 TCGA-FW-A3R5-06 22 25294158 25294158 G A SGSM1 Missense_Mutation p.V803M 0.17 tolerated(0.24) benign(0.016) TCGA-FW-A3R5-06 22 25294370 25294370 G A SGSM1 Silent p.R873R 0.27 TCGA-FW-A3R5-06 22 25294372 25294372 G A SGSM1 Missense_Mutation p.S874N 0.10 tolerated(0.22) benign(0.017) TCGA-FW-A3R5-06 22 25308672 25308672 G A SGSM1 Missense_Mutation p.G1016R 0.09 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 22 25308673 25308673 G A SGSM1 Missense_Mutation p.G1016E 0.09 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 22 25331255 25331255 C T TMEM211 3'UTR 0.33 TCGA-FW-A3R5-06 22 25331309 25331309 C T TMEM211 Missense_Mutation p.M127I 0.28 tolerated(0.45) benign(0.001) TCGA-FW-A3R5-06 22 25334143 25334143 G A TMEM211 Missense_Mutation p.P34S 0.14 tolerated(0.77) benign(0.281) TCGA-FW-A3R5-06 22 25620922 25620922 C T CRYBB2 Missense_Mutation p.S31L 0.37 tolerated(0.06) benign(0.134) TCGA-FW-A3R5-06 22 25627729 25627729 C T CRYBB2 Missense_Mutation p.P203L 0.25 deleterious(0.02) benign(0.002) TCGA-FW-A3R5-06 22 26118352 26118352 C T ADRBK2 Missense_Mutation p.P668S 0.28 tolerated_low_confidence(0.53) benign(0) TCGA-FW-A3R5-06 22 26157080 26157080 C T MYO18B Silent p.L7L 0.22 TCGA-FW-A3R5-06 22 26164095 26164095 C T MYO18B Missense_Mutation p.S71F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-FW-A3R5-06 22 26164588 26164588 G A MYO18B Silent p.E235E 0.17 TCGA-FW-A3R5-06 22 26164589 26164589 G A MYO18B Missense_Mutation p.E236K 0.36 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 22 26164846 26164846 C T MYO18B Silent p.F321F 0.23 TCGA-FW-A3R5-06 22 26165032 26165032 G A MYO18B Silent p.G383G 0.34 TCGA-FW-A3R5-06 22 26165144 26165144 G A MYO18B Missense_Mutation p.E421K 0.22 tolerated_low_confidence(0.07) benign(0.167) TCGA-FW-A3R5-06 22 26176114 26176114 G A MYO18B Silent p.V720V 0.26 TCGA-FW-A3R5-06 22 26219491 26219491 G A MYO18B Missense_Mutation p.M847I 0.30 deleterious(0.02) possibly_damaging(0.729) TCGA-FW-A3R5-06 22 26222391 26222391 G A MYO18B Missense_Mutation p.G904E 0.25 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 22 26228908 26228908 C T MYO18B Missense_Mutation p.L1002F 0.11 tolerated(0.42) possibly_damaging(0.614) TCGA-FW-A3R5-06 22 26228957 26228957 C T MYO18B Missense_Mutation p.P1018L 0.28 tolerated(0.07) benign(0.333) TCGA-FW-A3R5-06 22 26242107 26242107 C T MYO18B Missense_Mutation p.P1137S 0.21 tolerated(0.15) benign(0.351) TCGA-FW-A3R5-06 22 26242165 26242165 G A MYO18B Missense_Mutation p.R1156K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 22 26242168 26242168 G A MYO18B Missense_Mutation p.S1157N 0.25 tolerated(0.67) benign(0.004) TCGA-FW-A3R5-06 22 26294333 26294333 G A MYO18B Silent p.R1576R 0.26 TCGA-FW-A3R5-06 22 26343785 26343785 C T MYO18B Silent p.L1913L 0.24 TCGA-FW-A3R5-06 22 26346380 26346380 G A MYO18B Silent p.E1932E 0.21 TCGA-FW-A3R5-06 22 26422620 26422620 C T MYO18B Missense_Mutation p.P2227L 0.18 deleterious(0.01) benign(0.156) TCGA-FW-A3R5-06 22 26422713 26422713 G A MYO18B Missense_Mutation p.R2258Q 0.40 deleterious(0.03) possibly_damaging(0.469) TCGA-FW-A3R5-06 22 26422810 26422810 G A MYO18B Silent p.R2290R 0.17 TCGA-FW-A3R5-06 22 26422852 26422852 G A MYO18B Silent p.R2304R 0.33 TCGA-FW-A3R5-06 22 26422971 26422971 C T MYO18B Missense_Mutation p.S2344L 0.19 tolerated(0.45) benign(0.001) TCGA-FW-A3R5-06 22 26688486 26688486 C T SEZ6L Missense_Mutation p.P70L 0.13 deleterious_low_confidence(0.01) benign(0.03) TCGA-FW-A3R5-06 22 26688487 26688487 C T SEZ6L Silent p.P70P 0.13 TCGA-FW-A3R5-06 22 26688639 26688639 C T SEZ6L Missense_Mutation p.S121L 0.21 tolerated_low_confidence(0.09) benign(0.003) TCGA-FW-A3R5-06 22 26688703 26688703 C T SEZ6L Silent p.V142V 0.24 TCGA-FW-A3R5-06 22 26690364 26690364 C T SEZ6L Silent p.V314V 0.40 TCGA-FW-A3R5-06 22 26692881 26692881 G A SEZ6L Missense_Mutation p.E333K 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 22 26694975 26694975 C T SEZ6L Silent p.P396P 0.28 TCGA-FW-A3R5-06 22 26694976 26694976 C T SEZ6L Missense_Mutation p.R397C 0.30 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 22 26702046 26702046 G A SEZ6L Missense_Mutation p.E484K 0.32 deleterious(0.01) benign(0.042) TCGA-FW-A3R5-06 22 26736598 26736598 G A SEZ6L Missense_Mutation p.E738K 0.12 deleterious(0) possibly_damaging(0.861) TCGA-FW-A3R5-06 22 26743814 26743814 G A SEZ6L Missense_Mutation p.G781E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 26747146 26747146 C T SEZ6L Silent p.L846L 0.31 TCGA-FW-A3R5-06 22 26830241 26830241 G A ASPHD2 Missense_Mutation p.M220I 0.24 tolerated(0.42) benign(0.013) TCGA-FW-A3R5-06 22 26839301 26839301 G A ASPHD2 3'UTR 0.33 TCGA-FW-A3R5-06 22 26860664 26860664 G A HPS4 Missense_Mutation p.P311L 0.23 deleterious(0.04) possibly_damaging(0.496) TCGA-FW-A3R5-06 22 26936880 26936880 C T TPST2 Silent p.E239E 0.27 TCGA-FW-A3R5-06 22 26937530 26937530 G A TPST2 Nonsense_Mutation p.Q23* 0.17 TCGA-FW-A3R5-06 22 27018589 27018589 G A CRYBA4 Missense_Mutation p.G10E 0.09 deleterious(0.02) possibly_damaging(0.89) TCGA-FW-A3R5-06 22 28193847 28193847 C T MN1 Silent p.G895G 0.27 TCGA-FW-A3R5-06 22 28194205 28194205 G A MN1 Missense_Mutation p.S776F 0.36 benign(0.018) TCGA-FW-A3R5-06 22 28315250 28315250 C T PITPNB 5'UTR 0.41 TCGA-FW-A3R5-06 22 29446228 29446228 C T ZNRF3 Missense_Mutation p.L687F 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.899) TCGA-FW-A3R5-06 22 29630153 29630153 G A EMID1 Missense_Mutation p.G332R 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 29693867 29693867 C T EWSR1 Missense_Mutation p.P454S 0.10 tolerated(0.2) unknown(0) TCGA-FW-A3R5-06 22 29695762 29695762 C T EWSR1 Missense_Mutation p.P623S 0.43 tolerated_low_confidence(0.23) unknown(0) TCGA-FW-A3R5-06 22 29735010 29735010 G A AP1B1 Missense_Mutation p.T711I 0.32 tolerated(0.24) benign(0.001) TCGA-FW-A3R5-06 22 29752501 29752501 G A AP1B1 Silent p.A210A 0.34 TCGA-FW-A3R5-06 22 29833640 29833640 G A RFPL1 5'Flank 0.29 TCGA-FW-A3R5-06 22 29833658 29833658 C T RFPL1 5'Flank 0.19 TCGA-FW-A3R5-06 22 29837733 29837733 G A RFPL1 Nonsense_Mutation p.W192* 0.24 TCGA-FW-A3R5-06 22 29837927 29837927 C T RFPL1 Missense_Mutation p.S257F 0.25 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 22 29879498 29879498 G A NEFH Missense_Mutation p.D340N 0.19 deleterious(0) unknown(0) TCGA-FW-A3R5-06 22 29881776 29881776 G A NEFH Missense_Mutation p.R383Q 0.29 tolerated(0.08) unknown(0) TCGA-FW-A3R5-06 22 29885004 29885004 G A NEFH Missense_Mutation p.E459K 0.24 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 22 29885060 29885060 G A NEFH Silent p.E477E 0.38 TCGA-FW-A3R5-06 22 29885727 29885727 G A NEFH Missense_Mutation p.E700K 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-FW-A3R5-06 22 29886152 29886152 G A NEFH Silent p.K841K 0.15 TCGA-FW-A3R5-06 22 29886201 29886201 G A NEFH Missense_Mutation p.D858N 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 22 29956781 29956781 C T NIPSNAP1 Silent p.E216E 0.27 TCGA-FW-A3R5-06 22 29957530 29957530 G A NIPSNAP1 Missense_Mutation p.P182S 0.29 tolerated(0.24) benign(0.024) TCGA-FW-A3R5-06 22 30202214 30202214 G A ASCC2 Missense_Mutation p.S384L 0.29 tolerated(0.58) benign(0.005) TCGA-FW-A3R5-06 22 30202521 30202521 G A ASCC2 Silent p.F346F 0.29 TCGA-FW-A3R5-06 22 30398934 30398934 G A MTMR3 Missense_Mutation p.S208N 0.32 tolerated(1) benign(0.122) TCGA-FW-A3R5-06 22 30639468 30639468 C T LIF 3'UTR 0.38 TCGA-FW-A3R5-06 22 30639682 30639682 C T LIF Silent p.G189G 0.30 TCGA-FW-A3R5-06 22 30659804 30659804 C T OSM 3'UTR 0.23 TCGA-FW-A3R5-06 22 30659816 30659816 C T OSM 3'UTR 0.25 TCGA-FW-A3R5-06 22 30682303 30682303 G A GATSL3 Missense_Mutation p.S231F 0.17 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 22 30742459 30742459 G A SF3A1 Missense_Mutation p.P79S 0.23 tolerated(0.2) probably_damaging(0.992) TCGA-FW-A3R5-06 22 30742481 30742481 G A SF3A1 Silent p.I71I 0.31 TCGA-FW-A3R5-06 22 30867933 30867933 C T SEC14L3 Missense_Mutation p.V5I 0.32 tolerated(0.06) benign(0.122) TCGA-FW-A3R5-06 22 30887889 30887889 C T SEC14L4 Silent p.T281T 0.31 TCGA-FW-A3R5-06 22 30891358 30891358 G A SEC14L4 Silent p.I102I 0.27 TCGA-FW-A3R5-06 22 30891955 30891955 C T SEC14L4 Missense_Mutation p.R45Q 0.19 tolerated(0.11) benign(0.013) TCGA-FW-A3R5-06 22 30899683 30899683 G C SEC14L4 Missense_Mutation p.F37L 0.23 tolerated(0.05) probably_damaging(0.978) TCGA-FW-A3R5-06 22 30950936 30950936 G A GAL3ST1 3'UTR 0.36 TCGA-FW-A3R5-06 22 30951447 30951447 G A GAL3ST1 Silent p.F255F 0.22 TCGA-FW-A3R5-06 22 31032727 31032727 G A SLC35E4 Missense_Mutation p.G97E 0.24 tolerated(1) benign(0.202) TCGA-FW-A3R5-06 22 31042716 31042716 G A SLC35E4 Missense_Mutation p.D251N 0.19 tolerated(0.18) benign(0.035) TCGA-FW-A3R5-06 22 31091248 31091248 C T OSBP2 Missense_Mutation p.P118S 0.35 tolerated_low_confidence(0.65) benign(0) TCGA-FW-A3R5-06 22 31286729 31286729 G A OSBP2 Silent p.E546E 0.33 TCGA-FW-A3R5-06 22 31286903 31286903 G A OSBP2 Silent p.G604G 0.23 TCGA-FW-A3R5-06 22 31337958 31337958 G A MORC2 Silent p.L144L 0.33 TCGA-FW-A3R5-06 22 31487759 31487759 C T SMTN Missense_Mutation p.R520W 0.47 deleterious(0) possibly_damaging(0.677) TCGA-FW-A3R5-06 22 31489689 31489689 C T SMTN Intron 0.27 TCGA-FW-A3R5-06 22 31521797 31521797 C T INPP5J Intron 0.29 TCGA-FW-A3R5-06 22 31524554 31524554 C T INPP5J Missense_Mutation p.L335F 0.33 tolerated(0.3) possibly_damaging(0.907) TCGA-FW-A3R5-06 22 31532917 31532917 G A PLA2G3 Silent p.L392L 0.24 TCGA-FW-A3R5-06 22 31533801 31533801 G A PLA2G3 Missense_Mutation p.P321S 0.29 tolerated(0.59) benign(0.09) TCGA-FW-A3R5-06 22 31533829 31533829 C T PLA2G3 Silent p.G311G 0.30 TCGA-FW-A3R5-06 22 31533831 31533831 C T PLA2G3 Missense_Mutation p.G311R 0.30 tolerated(0.64) benign(0) TCGA-FW-A3R5-06 22 31533948 31533948 G A PLA2G3 Missense_Mutation p.R272C 0.23 deleterious(0.01) possibly_damaging(0.708) TCGA-FW-A3R5-06 22 31535929 31535929 C T PLA2G3 Missense_Mutation p.G138R 0.16 tolerated(0.16) benign(0.013) TCGA-FW-A3R5-06 22 31536324 31536324 C T PLA2G3 Missense_Mutation p.G6E 0.26 tolerated_low_confidence(0.1) benign(0.002) TCGA-FW-A3R5-06 22 31608360 31608360 C T LIMK2 5'UTR 0.33 TCGA-FW-A3R5-06 22 31608409 31608409 G A LIMK2 Silent p.A5A 0.38 TCGA-FW-A3R5-06 22 31654358 31654358 G A LIMK2 Silent p.G45G 0.41 TCGA-FW-A3R5-06 22 31807018 31807018 C T DRG1 Silent p.I121I 0.28 TCGA-FW-A3R5-06 22 31952984 31952984 C T SFI1 Missense_Mutation p.R201C 0.27 deleterious(0.01) probably_damaging(0.923) TCGA-FW-A3R5-06 22 32017780 32017780 G A PISD Missense_Mutation p.P104L 0.41 tolerated(0.08) possibly_damaging(0.535) TCGA-FW-A3R5-06 22 32200883 32200883 C T DEPDC5 Missense_Mutation p.P400L 0.09 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 22 32233121 32233121 T G DEPDC5 Silent p.L769L 0.08 TCGA-FW-A3R5-06 22 32239700 32239700 C T DEPDC5 Silent p.F892F 0.32 TCGA-FW-A3R5-06 22 32272248 32272248 C T DEPDC5 Nonsense_Mutation p.R1259* 0.32 TCGA-FW-A3R5-06 22 32289578 32289578 C T DEPDC5 Silent p.V1339V 0.32 TCGA-FW-A3R5-06 22 32445998 32445998 G A SLC5A1 Nonsense_Mutation p.W68* 0.40 TCGA-FW-A3R5-06 22 32498033 32498033 G A SLC5A1 Missense_Mutation p.G492R 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 22 32500794 32500794 C T SLC5A1 Silent p.L563L 0.17 TCGA-FW-A3R5-06 22 32506260 32506260 C T SLC5A1 3'UTR 0.29 TCGA-FW-A3R5-06 22 32650159 32650159 G A SLC5A4 Silent p.F59F 0.34 TCGA-FW-A3R5-06 22 32753916 32753916 C T RFPL3 5'UTR 0.26 TCGA-FW-A3R5-06 22 32756911 32756911 G A RFPL3 3'UTR 0.25 TCGA-FW-A3R5-06 22 32810252 32810252 G A BPIFC 3'UTR 0.18 TCGA-FW-A3R5-06 22 32914070 32914070 C T SYN3 Missense_Mutation p.E524K 0.32 tolerated(0.63) possibly_damaging(0.883) TCGA-FW-A3R5-06 22 33260980 33260980 G A SYN3 Silent p.L211L 0.31 TCGA-FW-A3R5-06 22 34000534 34000534 G A LARGE Silent p.L168L 0.22 TCGA-FW-A3R5-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 35478634 35478634 G A ISX Missense_Mutation p.R118K 0.22 tolerated(0.66) benign(0.39) TCGA-FW-A3R5-06 22 35813759 35813759 C T MCM5 Missense_Mutation p.T538I 0.32 deleterious(0.02) benign(0.128) TCGA-FW-A3R5-06 22 35947969 35947969 G A RASD2 Missense_Mutation p.V231I 0.24 tolerated(0.11) benign(0.007) TCGA-FW-A3R5-06 22 36007060 36007060 C T MB Silent p.K63K 0.16 TCGA-FW-A3R5-06 22 36055574 36055574 G A APOL6 Silent p.R321R 0.14 TCGA-FW-A3R5-06 22 36142017 36142017 G A RBFOX2 Missense_Mutation p.P422S 0.25 probably_damaging(0.999) TCGA-FW-A3R5-06 22 36538042 36538042 C T APOL3 Missense_Mutation p.E139K 0.31 tolerated(0.94) benign(0) TCGA-FW-A3R5-06 22 36545135 36545135 C T APOL3 Intron 0.36 TCGA-FW-A3R5-06 22 36545174 36545174 C T APOL3 Intron 0.31 TCGA-FW-A3R5-06 22 36556853 36556853 G A APOL3 Silent p.F29F 0.33 TCGA-FW-A3R5-06 22 36556958 36556958 C T APOL3 5'UTR 0.20 TCGA-FW-A3R5-06 22 36587196 36587196 C T APOL4 Missense_Mutation p.R327K 0.24 tolerated(0.87) benign(0.058) TCGA-FW-A3R5-06 22 36587388 36587388 C T APOL4 Nonsense_Mutation p.W263* 0.30 TCGA-FW-A3R5-06 22 36587447 36587447 C T APOL4 Silent p.A243A 0.39 TCGA-FW-A3R5-06 22 36587770 36587770 G A APOL4 Missense_Mutation p.H136Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 22 36597832 36597832 G A APOL4 Intron 0.27 TCGA-FW-A3R5-06 22 36653169 36653169 G A APOL1 Missense_Mutation p.E45K 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-FW-A3R5-06 22 36661548 36661548 G A APOL1 Silent p.G238G 0.19 TCGA-FW-A3R5-06 22 36661745 36661745 G A APOL1 Missense_Mutation p.R304Q 0.26 tolerated(0.66) benign(0.009) TCGA-FW-A3R5-06 22 36714350 36714350 G A MYH9 Missense_Mutation p.L377F 0.31 probably_damaging(0.993) TCGA-FW-A3R5-06 22 36900680 36900680 G A FOXRED2 Missense_Mutation p.R221C 0.28 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 22 36983516 36983516 G A CACNG2 Silent p.F97F 0.30 TCGA-FW-A3R5-06 22 37272064 37272064 C T NCF4 Missense_Mutation p.P333S 0.24 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 22 37319368 37319368 C T CSF2RB Silent p.A53A 0.20 TCGA-FW-A3R5-06 22 37319369 37319369 C T CSF2RB Nonsense_Mutation p.Q54* 0.20 TCGA-FW-A3R5-06 22 37325463 37325463 G A CSF2RB Silent p.R137R 0.26 TCGA-FW-A3R5-06 22 37328890 37328890 G A CSF2RB Missense_Mutation p.E366K 0.20 tolerated(0.96) benign(0.004) TCGA-FW-A3R5-06 22 37333917 37333917 G A CSF2RB Silent p.K689K 0.11 TCGA-FW-A3R5-06 22 37334447 37334447 C T CSF2RB Missense_Mutation p.P866L 0.21 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 22 37334448 37334448 C T CSF2RB Silent p.P866P 0.20 TCGA-FW-A3R5-06 22 37397962 37397962 C T TEX33 Silent p.T135T 0.13 TCGA-FW-A3R5-06 22 37398062 37398062 G A TEX33 Missense_Mutation p.S102L 0.24 tolerated(0.18) benign(0) TCGA-FW-A3R5-06 22 37407092 37407092 G A TST Silent p.S290S 0.22 TCGA-FW-A3R5-06 22 37407121 37407121 G A TST Missense_Mutation p.R281C 0.33 tolerated(0.08) possibly_damaging(0.713) TCGA-FW-A3R5-06 22 37457582 37457582 C T KCTD17 Missense_Mutation p.S246F 0.21 tolerated_low_confidence(0.22) benign(0.001) TCGA-FW-A3R5-06 22 37462118 37462118 C T TMPRSS6 3'UTR 0.39 TCGA-FW-A3R5-06 22 37462938 37462938 C T TMPRSS6 Silent p.E735E 0.35 TCGA-FW-A3R5-06 22 37467050 37467050 G A TMPRSS6 Silent p.T535T 0.30 TCGA-FW-A3R5-06 22 37494459 37494459 C A TMPRSS6 Missense_Mutation p.K120N 0.30 tolerated(0.46) benign(0.008) TCGA-FW-A3R5-06 22 37524322 37524322 C T IL2RB Silent p.E490E 0.24 TCGA-FW-A3R5-06 22 37578762 37578762 G A C1QTNF6 Silent p.D101D 0.41 TCGA-FW-A3R5-06 22 37602795 37602795 C T SSTR3 Missense_Mutation p.E350K 0.33 tolerated(0.27) benign(0.025) TCGA-FW-A3R5-06 22 37602816 37602816 C T SSTR3 Missense_Mutation p.G343R 0.20 tolerated(0.38) benign(0.059) TCGA-FW-A3R5-06 22 37602897 37602897 G A SSTR3 Missense_Mutation p.L316F 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 22 37603671 37603671 C T SSTR3 Missense_Mutation p.G58S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 37627425 37627425 G A RAC2 Silent p.F98F 0.31 TCGA-FW-A3R5-06 22 37678533 37678533 C T CYTH4 5'UTR 0.19 TCGA-FW-A3R5-06 22 37690748 37690748 C T CYTH4 Silent p.F50F 0.32 TCGA-FW-A3R5-06 22 37707063 37707063 C T CYTH4 Silent p.F281F 0.32 TCGA-FW-A3R5-06 22 37707082 37707082 C T CYTH4 Missense_Mutation p.L288F 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 22 37709492 37709492 C T CYTH4 Silent p.T375T 0.25 TCGA-FW-A3R5-06 22 37709508 37709508 G A CYTH4 Missense_Mutation p.D381N 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 22 37769835 37769835 G A ELFN2 Silent p.S580S 0.29 TCGA-FW-A3R5-06 22 37769836 37769836 G A ELFN2 Missense_Mutation p.S580F 0.29 tolerated(0.18) benign(0.099) TCGA-FW-A3R5-06 22 37770944 37770944 C T ELFN2 Missense_Mutation p.D211N 0.33 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 22 37882141 37882141 C T MFNG Silent p.R25R 0.26 TCGA-FW-A3R5-06 22 37891882 37891882 C T CARD10 Missense_Mutation p.E730K 0.25 deleterious(0) possibly_damaging(0.621) TCGA-FW-A3R5-06 22 37892456 37892456 C T CARD10 Missense_Mutation p.A687T 0.23 deleterious(0.01) benign(0.298) TCGA-FW-A3R5-06 22 37903940 37903940 G A CARD10 Silent p.L363L 0.20 TCGA-FW-A3R5-06 22 37962533 37962533 G A CDC42EP1 Silent p.G59G 0.33 TCGA-FW-A3R5-06 22 37962694 37962694 C T CDC42EP1 Missense_Mutation p.S113F 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 22 37964342 37964342 C T CDC42EP1 Missense_Mutation p.P231S 0.26 tolerated(0.55) unknown(0) TCGA-FW-A3R5-06 22 37964343 37964343 C T CDC42EP1 Missense_Mutation p.P231L 0.26 tolerated(0.45) unknown(0) TCGA-FW-A3R5-06 22 37976014 37976014 C T LGALS2 5'UTR 0.36 TCGA-FW-A3R5-06 22 38040710 38040710 C T SH3BP1 Missense_Mutation p.R229C 0.19 deleterious(0.04) possibly_damaging(0.892) TCGA-FW-A3R5-06 22 38051317 38051317 C T SH3BP1 Missense_Mutation p.P578S 0.35 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 22 38051357 38051357 C T SH3BP1 Missense_Mutation p.P591L 0.47 tolerated(0.21) benign(0.003) TCGA-FW-A3R5-06 22 38106446 38106446 C T TRIOBP Missense_Mutation p.P43S 0.33 deleterious_low_confidence(0) benign(0.313) TCGA-FW-A3R5-06 22 38120288 38120288 C T TRIOBP Silent p.P575P 0.14 TCGA-FW-A3R5-06 22 38120332 38120332 C T TRIOBP Missense_Mutation p.P590L 0.16 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-FW-A3R5-06 22 38120834 38120834 C T TRIOBP Silent p.S757S 0.31 TCGA-FW-A3R5-06 22 38121503 38121503 C T TRIOBP Silent p.S980S 0.26 TCGA-FW-A3R5-06 22 38121863 38121863 C T TRIOBP Silent p.S1100S 0.27 TCGA-FW-A3R5-06 22 38121996 38121996 G A TRIOBP Missense_Mutation p.E1145K 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FW-A3R5-06 22 38131207 38131207 C T TRIOBP Missense_Mutation p.P1622S 0.22 tolerated_low_confidence(0.21) benign(0.196) TCGA-FW-A3R5-06 22 38234576 38234576 G A ANKRD54 Missense_Mutation p.P136S 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 22 38245370 38245370 C T EIF3L 5'UTR 0.28 TCGA-FW-A3R5-06 22 38245427 38245427 T C EIF3L 5'UTR 0.22 TCGA-FW-A3R5-06 22 38530995 38530995 C T PLA2G6 Silent p.E298E 0.20 TCGA-FW-A3R5-06 22 38531036 38531036 G A PLA2G6 Missense_Mutation p.R285C 0.28 deleterious(0.03) possibly_damaging(0.582) TCGA-FW-A3R5-06 22 38531037 38531037 G A PLA2G6 Silent p.P284P 0.28 TCGA-FW-A3R5-06 22 38690525 38690525 G A CSNK1E Missense_Mutation p.P301S 0.33 tolerated_low_confidence(0.15) benign(0.001) TCGA-FW-A3R5-06 22 38699191 38699191 G A CSNK1E Missense_Mutation p.P47S 0.38 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FW-A3R5-06 22 38822908 38822908 C T KCNJ4 Silent p.E410E 0.27 TCGA-FW-A3R5-06 22 38823763 38823763 G A KCNJ4 Silent p.F125F 0.23 TCGA-FW-A3R5-06 22 38884037 38884037 G A DDX17 Missense_Mutation p.R511C 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 22 38962607 38962607 C T DMC1 Silent p.A77A 0.23 TCGA-FW-A3R5-06 22 39077966 39077966 C T TOMM22 5'UTR 0.38 TCGA-FW-A3R5-06 22 39125543 39125543 C T GTPBP1 Missense_Mutation p.P598L 0.24 deleterious(0.05) benign(0.002) TCGA-FW-A3R5-06 22 39224351 39224351 C T NPTXR Missense_Mutation p.R264K 0.32 tolerated(0.08) benign(0.061) TCGA-FW-A3R5-06 22 39224440 39224440 C T NPTXR Silent p.K234K 0.30 TCGA-FW-A3R5-06 22 39388084 39388084 C T APOBEC3B Missense_Mutation p.P355L 0.29 deleterious(0.03) possibly_damaging(0.898) TCGA-FW-A3R5-06 22 39448345 39448345 C T APOBEC3F Silent p.I330I 0.30 TCGA-FW-A3R5-06 22 39477000 39477000 G A APOBEC3G Silent p.R78R 0.35 TCGA-FW-A3R5-06 22 39629528 39629528 C T PDGFB Silent p.E54E 0.26 TCGA-FW-A3R5-06 22 39631795 39631795 C T PDGFB Missense_Mutation p.G50R 0.26 tolerated(0.6) benign(0.031) TCGA-FW-A3R5-06 22 39773623 39773623 C T SYNGR1 Intron 0.17 TCGA-FW-A3R5-06 22 39824183 39824183 C T TAB1 Silent p.L434L 0.22 TCGA-FW-A3R5-06 22 39883676 39883676 C T MGAT3 Silent p.F108F 0.21 TCGA-FW-A3R5-06 22 39883959 39883959 G A MGAT3 Missense_Mutation p.E203K 0.28 tolerated(0.62) benign(0.012) TCGA-FW-A3R5-06 22 39884112 39884112 C T MGAT3 Missense_Mutation p.R254W 0.27 deleterious(0.02) benign(0.153) TCGA-FW-A3R5-06 22 39884747 39884747 C T MGAT3 Silent p.F465F 0.21 TCGA-FW-A3R5-06 22 39966858 39966858 C T CACNA1I Missense_Mutation p.S34F 0.37 deleterious_low_confidence(0.02) probably_damaging(0.946) TCGA-FW-A3R5-06 22 39966859 39966859 C T CACNA1I Silent p.S34S 0.25 TCGA-FW-A3R5-06 22 40030593 40030593 C T CACNA1I Missense_Mutation p.L202F 0.23 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 22 40037088 40037088 G A CACNA1I Nonsense_Mutation p.W319* 0.24 TCGA-FW-A3R5-06 22 40045876 40045876 C T CACNA1I Silent p.I646I 0.22 TCGA-FW-A3R5-06 22 40061891 40061891 C T CACNA1I Silent p.F1328F 0.28 TCGA-FW-A3R5-06 22 40074023 40074023 G A CACNA1I Missense_Mutation p.M1655I 0.27 deleterious(0.01) benign(0.072) TCGA-FW-A3R5-06 22 40078519 40078519 G A CACNA1I Missense_Mutation p.E1895K 0.33 tolerated(0.2) benign(0.292) TCGA-FW-A3R5-06 22 40139745 40139745 G A ENTHD1 Missense_Mutation p.S588L 0.28 tolerated(0.57) unknown(0) TCGA-FW-A3R5-06 22 40283671 40283671 C T ENTHD1 Missense_Mutation p.D28N 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 40351840 40351840 G A GRAP2 Silent p.E32E 0.09 TCGA-FW-A3R5-06 22 40669560 40669560 C T TNRC6B Missense_Mutation p.H1033Y 0.50 tolerated(0.64) benign(0.163) TCGA-FW-A3R5-06 22 40719134 40719134 C T TNRC6B Silent p.N1797N 0.28 TCGA-FW-A3R5-06 22 40746003 40746003 C T ADSL Silent p.H107H 0.20 TCGA-FW-A3R5-06 22 40746004 40746004 C T ADSL Missense_Mutation p.L108F 0.20 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 22 40762483 40762483 C T ADSL Missense_Mutation p.P471L 0.29 tolerated(0.05) benign(0.067) TCGA-FW-A3R5-06 22 40814611 40814611 G A MKL1 Missense_Mutation p.P611S 0.26 tolerated(0.68) benign(0.004) TCGA-FW-A3R5-06 22 40815211 40815211 G A MKL1 Missense_Mutation p.P411S 0.23 deleterious(0.03) benign(0.09) TCGA-FW-A3R5-06 22 40827457 40827457 G A MKL1 Missense_Mutation p.R31C 0.34 deleterious(0) benign(0.005) TCGA-FW-A3R5-06 22 41075531 41075531 G A MCHR1 Missense_Mutation p.D28N 0.28 tolerated_low_confidence(0.61) benign(0.017) TCGA-FW-A3R5-06 22 41077897 41077897 G A MCHR1 Missense_Mutation p.A412T 0.11 tolerated(0.27) benign(0.051) TCGA-FW-A3R5-06 22 41265035 41265035 C T XPNPEP3 Missense_Mutation p.L33F 0.33 tolerated(0.1) benign(0.359) TCGA-FW-A3R5-06 22 41277899 41277899 C T XPNPEP3 Missense_Mutation p.P103S 0.32 tolerated(0.42) benign(0.349) TCGA-FW-A3R5-06 22 41322440 41322440 C T XPNPEP3 3'UTR 0.31 TCGA-FW-A3R5-06 22 41564759 41564759 C T EP300 Missense_Mutation p.P1354S 0.19 probably_damaging(0.999) TCGA-FW-A3R5-06 22 41621801 41621801 C T L3MBTL2 Missense_Mutation p.L454F 0.24 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 22 41621803 41621803 C T L3MBTL2 Silent p.L454L 0.25 TCGA-FW-A3R5-06 22 41735093 41735093 C T ZC3H7B Silent p.A238A 0.25 TCGA-FW-A3R5-06 22 41735888 41735888 C T ZC3H7B Silent p.F295F 0.21 TCGA-FW-A3R5-06 22 41735935 41735935 C T ZC3H7B Missense_Mutation p.P311L 0.38 deleterious(0.03) possibly_damaging(0.548) TCGA-FW-A3R5-06 22 41791979 41791979 C T TEF 3'UTR 0.41 TCGA-FW-A3R5-06 22 41833288 41833288 G A TOB2 Missense_Mutation p.P21L 0.39 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 22 41864706 41864706 C T PHF5A 5'UTR 0.44 TCGA-FW-A3R5-06 22 41864707 41864707 C T PHF5A 5'UTR 0.41 TCGA-FW-A3R5-06 22 42128555 42128555 C T MEI1 Missense_Mutation p.P427S 0.42 tolerated(0.3) probably_damaging(0.998) TCGA-FW-A3R5-06 22 42128605 42128605 G A MEI1 Silent p.L443L 0.24 TCGA-FW-A3R5-06 22 42149979 42149979 C T MEI1 Missense_Mutation p.S627F 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 22 42204930 42204930 C T CCDC134 Silent p.V12V 0.17 TCGA-FW-A3R5-06 22 42209433 42209433 C T CCDC134 Missense_Mutation p.S159L 0.28 tolerated(0.06) benign(0.242) TCGA-FW-A3R5-06 22 42263150 42263150 C T SREBF2 Missense_Mutation p.P135L 0.35 tolerated(0.14) benign(0.004) TCGA-FW-A3R5-06 22 42289183 42289183 C T SREBF2 Silent p.S757S 0.21 TCGA-FW-A3R5-06 22 42540356 42540356 G A RP4-669P10.16 5'Flank 0.38 TCGA-FW-A3R5-06 22 42607138 42607138 G A TCF20 Missense_Mutation p.P1392S 0.15 possibly_damaging(0.724) TCGA-FW-A3R5-06 22 42608869 42608869 G A TCF20 Missense_Mutation p.P815S 0.30 probably_damaging(0.999) TCGA-FW-A3R5-06 22 42807450 42807450 G A NFAM1 Silent p.S138S 0.41 TCGA-FW-A3R5-06 22 42807591 42807591 C T NFAM1 Silent p.R91R 0.27 TCGA-FW-A3R5-06 22 42807656 42807656 G A NFAM1 Missense_Mutation p.P70S 0.36 tolerated(0.16) benign(0.158) TCGA-FW-A3R5-06 22 42981189 42981189 G A POLDIP3 3'UTR 0.27 TCGA-FW-A3R5-06 22 42981873 42981873 G A POLDIP3 Missense_Mutation p.T397I 0.34 tolerated(0.09) probably_damaging(0.99) TCGA-FW-A3R5-06 22 43089247 43089247 G A A4GALT Silent p.F237F 0.23 TCGA-FW-A3R5-06 22 43089886 43089886 G A A4GALT Silent p.F24F 0.31 TCGA-FW-A3R5-06 22 43606197 43606197 G A SCUBE1 Silent p.S811S 0.29 TCGA-FW-A3R5-06 22 43606198 43606198 G A SCUBE1 Missense_Mutation p.S811F 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 43610138 43610138 C T SCUBE1 Missense_Mutation p.G671R 0.32 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 22 43614358 43614358 G A SCUBE1 Silent p.V598V 0.41 TCGA-FW-A3R5-06 22 43634857 43634857 C T SCUBE1 Silent p.G277G 0.13 TCGA-FW-A3R5-06 22 43821046 43821046 C T MPPED1 Missense_Mutation p.L19F 0.15 deleterious_low_confidence(0.04) benign(0.146) TCGA-FW-A3R5-06 22 43821061 43821061 G A MPPED1 Missense_Mutation p.G24S 0.47 deleterious_low_confidence(0.03) benign(0.01) TCGA-FW-A3R5-06 22 43821097 43821097 C T MPPED1 Missense_Mutation p.R36W 0.38 deleterious(0) possibly_damaging(0.895) TCGA-FW-A3R5-06 22 43936011 43936011 G A EFCAB6 Missense_Mutation p.P1292L 0.16 deleterious(0) possibly_damaging(0.903) TCGA-FW-A3R5-06 22 43972278 43972278 C T EFCAB6 Missense_Mutation p.D1107N 0.29 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 22 43976494 43976494 G A EFCAB6 Silent p.F1026F 0.29 TCGA-FW-A3R5-06 22 43986097 43986097 C T EFCAB6 Missense_Mutation p.M963I 0.26 tolerated(0.18) benign(0.001) TCGA-FW-A3R5-06 22 44004474 44004474 G A EFCAB6 Silent p.L857L 0.38 TCGA-FW-A3R5-06 22 44064780 44064780 C T EFCAB6 Missense_Mutation p.E596K 0.08 tolerated(0.24) benign(0.007) TCGA-FW-A3R5-06 22 44131741 44131741 C T EFCAB6 Missense_Mutation p.E214K 0.28 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 22 44223502 44223502 C T SULT4A1 Intron 0.14 TCGA-FW-A3R5-06 22 44234833 44234833 G A SULT4A1 Missense_Mutation p.S141F 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 22 44234858 44234858 G A SULT4A1 Missense_Mutation p.R133C 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 22 44235853 44235853 G A SULT4A1 Missense_Mutation p.P118L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 44277460 44277460 C T PNPLA5 Missense_Mutation p.A393T 0.27 tolerated(0.6) benign(0.017) TCGA-FW-A3R5-06 22 44280179 44280179 G A PNPLA5 Silent p.F332F 0.08 TCGA-FW-A3R5-06 22 45128160 45128160 C T PRR5 Silent p.A171A 0.22 TCGA-FW-A3R5-06 22 45279062 45279062 C T PHF21B Silent p.T500T 0.21 TCGA-FW-A3R5-06 22 45309885 45309885 G A PHF21B Silent p.P216P 0.30 TCGA-FW-A3R5-06 22 45312480 45312480 G A PHF21B Missense_Mutation p.L82F 0.35 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-FW-A3R5-06 22 45683229 45683229 C T UPK3A Silent p.L129L 0.26 TCGA-FW-A3R5-06 22 45685012 45685012 C T UPK3A Missense_Mutation p.R187C 0.15 tolerated(0.14) benign(0.011) TCGA-FW-A3R5-06 22 45689189 45689189 C T UPK3A Silent p.S233S 0.24 TCGA-FW-A3R5-06 22 45691663 45691663 G A UPK3A 3'UTR 0.41 TCGA-FW-A3R5-06 22 45719239 45719239 C T FAM118A Silent p.F77F 0.10 TCGA-FW-A3R5-06 22 45723824 45723824 C T FAM118A Silent p.I134I 0.21 TCGA-FW-A3R5-06 22 45782899 45782899 C T SMC1B Missense_Mutation p.E587K 0.19 deleterious(0.04) probably_damaging(0.944) TCGA-FW-A3R5-06 22 45795022 45795022 C T SMC1B Missense_Mutation p.E356K 0.11 tolerated(0.16) benign(0.073) TCGA-FW-A3R5-06 22 45798380 45798380 G A SMC1B Silent p.Y229Y 0.30 TCGA-FW-A3R5-06 22 45813553 45813553 C T RIBC2 Missense_Mutation p.L90F 0.23 deleterious(0) possibly_damaging(0.681) TCGA-FW-A3R5-06 22 45914634 45914634 C T FBLN1 Missense_Mutation p.S51L 0.29 deleterious(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 22 45923763 45923763 C T FBLN1 Nonsense_Mutation p.Q120* 0.14 TCGA-FW-A3R5-06 22 45923856 45923856 G A FBLN1 Missense_Mutation p.G151R 0.21 tolerated(0.39) benign(0) TCGA-FW-A3R5-06 22 45946460 45946460 C T FBLN1 Silent p.F554F 0.13 TCGA-FW-A3R5-06 22 45958907 45958907 C T FBLN1 Intron 0.28 TCGA-FW-A3R5-06 22 46096167 46096167 C T ATXN10 Missense_Mutation p.R133C 0.33 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 22 46202900 46202900 C T ATXN10 Missense_Mutation p.P412L 0.25 deleterious(0) possibly_damaging(0.585) TCGA-FW-A3R5-06 22 46318801 46318801 G A WNT7B Missense_Mutation p.H329Y 0.26 tolerated(0.1) benign(0.119) TCGA-FW-A3R5-06 22 46318965 46318965 G A WNT7B Missense_Mutation p.S274L 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 46327170 46327170 C T WNT7B Silent p.G126G 0.34 TCGA-FW-A3R5-06 22 46508522 46508522 C T FLJ27365 3'UTR 0.17 TCGA-FW-A3R5-06 22 46615854 46615854 C T PPARA Silent p.F218F 0.09 TCGA-FW-A3R5-06 22 46653509 46653509 C T PKDREJ Missense_Mutation p.S1904N 0.28 tolerated(0.16) benign(0.199) TCGA-FW-A3R5-06 22 46655306 46655306 C T PKDREJ Missense_Mutation p.R1305Q 0.13 tolerated(0.37) benign(0.035) TCGA-FW-A3R5-06 22 46655520 46655520 C T PKDREJ Missense_Mutation p.V1234M 0.34 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 22 46656462 46656462 C T PKDREJ Missense_Mutation p.D920N 0.31 tolerated(0.19) benign(0.008) TCGA-FW-A3R5-06 22 46657680 46657680 C T PKDREJ Missense_Mutation p.G514R 0.29 tolerated(0.09) possibly_damaging(0.901) TCGA-FW-A3R5-06 22 46669961 46669961 C T TTC38 Silent p.A120A 0.33 TCGA-FW-A3R5-06 22 46685431 46685431 C T TTC38 Silent p.I405I 0.24 TCGA-FW-A3R5-06 22 46704372 46704372 C T GTSE1 Silent p.F98F 0.26 TCGA-FW-A3R5-06 22 46712010 46712010 C T GTSE1 Missense_Mutation p.P378L 0.36 tolerated(1) benign(0.013) TCGA-FW-A3R5-06 22 46782321 46782321 G A CELSR1 Silent p.F2239F 0.38 TCGA-FW-A3R5-06 22 46787167 46787167 G A CELSR1 Missense_Mutation p.P2056S 0.41 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 46835200 46835200 G A CELSR1 Missense_Mutation p.P1431L 0.09 tolerated(0.06) benign(0.232) TCGA-FW-A3R5-06 22 46930133 46930133 G A CELSR1 Missense_Mutation p.L979F 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 22 47022730 47022730 G A GRAMD4 Missense_Mutation p.G12S 0.16 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 22 47062746 47062746 C T GRAMD4 Silent p.I278I 0.30 TCGA-FW-A3R5-06 22 47116007 47116007 G A CERK Silent p.L119L 0.24 TCGA-FW-A3R5-06 22 47193357 47193357 C T TBC1D22A Silent p.A159A 0.24 TCGA-FW-A3R5-06 22 50167772 50167772 G A BRD1 3'UTR 0.35 TCGA-FW-A3R5-06 22 50169713 50169713 G A BRD1 Silent p.P941P 0.37 TCGA-FW-A3R5-06 22 50436142 50436142 C T IL17REL Silent p.R283R 0.19 TCGA-FW-A3R5-06 22 50472793 50472793 C T TTLL8 Silent p.R360R 0.10 TCGA-FW-A3R5-06 22 50472794 50472794 C A TTLL8 Missense_Mutation p.R360L 0.10 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 22 50480161 50480161 G A TTLL8 Missense_Mutation p.A276V 0.29 tolerated(0.1) benign(0.128) TCGA-FW-A3R5-06 22 50488621 50488621 C T TTLL8 Missense_Mutation p.R72Q 0.29 deleterious(0) possibly_damaging(0.606) TCGA-FW-A3R5-06 22 50521574 50521574 G A MLC1 Missense_Mutation p.S69L 0.27 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FW-A3R5-06 22 50546582 50546582 G A MOV10L1 Missense_Mutation p.G154R 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 50552119 50552119 G A MOV10L1 Silent p.T262T 0.28 TCGA-FW-A3R5-06 22 50552915 50552915 C T MOV10L1 Silent p.P330P 0.21 TCGA-FW-A3R5-06 22 50553013 50553013 C T MOV10L1 Missense_Mutation p.S363L 0.19 tolerated(0.31) benign(0) TCGA-FW-A3R5-06 22 50596572 50596572 C T MOV10L1 Silent p.A1051A 0.18 TCGA-FW-A3R5-06 22 50599869 50599869 G A MOV10L1 Silent p.E1209E 0.20 TCGA-FW-A3R5-06 22 50615655 50615655 C T PANX2 Missense_Mutation p.R172C 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 22 50615914 50615914 C T PANX2 Missense_Mutation p.T258I 0.29 deleterious(0.02) possibly_damaging(0.878) TCGA-FW-A3R5-06 22 50617716 50617716 C T PANX2 3'UTR 0.22 TCGA-FW-A3R5-06 22 50658827 50658827 G A TUBGCP6 Silent p.L1321L 0.24 TCGA-FW-A3R5-06 22 50660972 50660972 G A TUBGCP6 Missense_Mutation p.R774W 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 22 50662634 50662634 G A TUBGCP6 Missense_Mutation p.R736C 0.21 deleterious(0.01) benign(0.008) TCGA-FW-A3R5-06 22 50671870 50671870 G A TUBGCP6 Missense_Mutation p.L331F 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 22 50719833 50719833 G A PLXNB2 Silent p.I1206I 0.19 TCGA-FW-A3R5-06 22 50757412 50757412 G A DENND6B Silent p.F66F 0.56 TCGA-FW-A3R5-06 22 50875489 50875489 C T PPP6R2 Intron 0.44 TCGA-FW-A3R5-06 22 50895042 50895042 G A SBF1 Missense_Mutation p.S1322F 0.26 deleterious(0.02) benign(0.144) TCGA-FW-A3R5-06 22 50903491 50903491 G A SBF1 Missense_Mutation p.A424V 0.33 tolerated(0.09) probably_damaging(0.97) TCGA-FW-A3R5-06 22 50921144 50921144 C T ADM2 Missense_Mutation p.R87C 0.22 deleterious(0.03) benign(0.293) TCGA-FW-A3R5-06 22 50927994 50927994 C T MIOX Missense_Mutation p.P224S 0.37 deleterious(0.01) possibly_damaging(0.73) TCGA-FW-A3R5-06 22 50927995 50927995 C T MIOX Missense_Mutation p.P224L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 22 50941853 50941853 G A LMF2 Silent p.S697S 0.33 TCGA-FW-A3R5-06 22 50944496 50944496 G A LMF2 Nonsense_Mutation p.R248* 0.62 TCGA-FW-A3R5-06 22 50956060 50956060 C T NCAPH2 Silent p.S107S 0.25 TCGA-FW-A3R5-06 22 50987862 50987862 C T KLHDC7B Missense_Mutation p.P423S 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 50987912 50987912 C T KLHDC7B Silent p.F439F 0.24 TCGA-FW-A3R5-06 22 50987943 50987943 G A KLHDC7B Missense_Mutation p.G450R 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 50987944 50987944 G A KLHDC7B Missense_Mutation p.G450E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 22 51017915 51017915 G A CHKB Silent p.F351F 0.13 TCGA-FW-A3R5-06 22 51018247 51018247 G A CHKB Missense_Mutation p.R314C 0.32 deleterious(0) benign(0.067) TCGA-FW-A3R5-06 22 51041867 51041867 C T MAPK8IP2 Silent p.S129S 0.40 TCGA-FW-A3R5-06 22 51043813 51043813 C T MAPK8IP2 Missense_Mutation p.L594F 0.12 deleterious(0.01) benign(0.197) TCGA-FW-A3R5-06 22 51143224 51143224 C T SHANK3 Silent p.L626L 0.18 TCGA-FW-A3R5-06 22 51160458 51160458 C T SHANK3 Silent p.F1415F 0.59 TCGA-FW-A3R5-06 22 51177731 51177731 C T ACR Missense_Mutation p.P37L 0.19 tolerated(0.51) benign(0.005) TCGA-FW-A3R5-06 2 100055656 100055656 G A REV1 Missense_Mutation p.S207F 0.18 tolerated(0.81) benign(0) TCGA-FW-A3R5-06 2 100210086 100210086 G A AFF3 Silent p.S704S 0.20 TCGA-FW-A3R5-06 2 100623260 100623260 C T AFF3 Missense_Mutation p.R261K 0.28 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 2 100623364 100623364 G A AFF3 Silent p.A226A 0.31 TCGA-FW-A3R5-06 2 100623449 100623449 C T AFF3 Missense_Mutation p.G198E 0.25 deleterious(0.05) possibly_damaging(0.711) TCGA-FW-A3R5-06 2 101012051 101012051 G A CHST10 Silent p.I151I 0.25 TCGA-FW-A3R5-06 2 10132199 10132199 C T GRHL1 Silent p.P462P 0.52 TCGA-FW-A3R5-06 2 10132227 10132227 C T GRHL1 Missense_Mutation p.L472F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 101656712 101656712 G A TBC1D8 Silent p.F321F 0.32 TCGA-FW-A3R5-06 2 10186390 10186390 T A KLF11 Silent p.V52V 0.36 TCGA-FW-A3R5-06 2 10187786 10187786 C T KLF11 Missense_Mutation p.P108S 0.12 deleterious(0.01) probably_damaging(0.915) TCGA-FW-A3R5-06 2 10199021 10199021 C T CYS1 Missense_Mutation p.E146K 0.64 deleterious(0) possibly_damaging(0.486) TCGA-FW-A3R5-06 2 102000095 102000095 G A CREG2 Missense_Mutation p.P171S 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 102441875 102441875 C T MAP4K4 Missense_Mutation p.S134F 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 2 102490132 102490132 C T MAP4K4 Silent p.L847L 0.19 TCGA-FW-A3R5-06 2 102626047 102626047 C T IL1R2 Missense_Mutation p.R31C 0.26 deleterious(0.04) possibly_damaging(0.824) TCGA-FW-A3R5-06 2 102644862 102644862 G A IL1R2 3'UTR 0.20 TCGA-FW-A3R5-06 2 102849529 102849529 G A IL1RL2 Silent p.E414E 0.33 TCGA-FW-A3R5-06 2 102851377 102851377 G A IL1RL2 Missense_Mutation p.E440K 0.27 deleterious(0) possibly_damaging(0.728) TCGA-FW-A3R5-06 2 102851526 102851526 G A IL1RL2 Silent p.E489E 0.26 TCGA-FW-A3R5-06 2 102956585 102956585 G A IL1RL1 Silent p.A100A 0.18 TCGA-FW-A3R5-06 2 102959618 102959618 G A IL1RL1 Missense_Mutation p.E269K 0.18 tolerated(0.28) benign(0.049) TCGA-FW-A3R5-06 2 102959953 102959953 G A IL1RL1 Intron 0.27 TCGA-FW-A3R5-06 2 102964547 102964547 G A IL1RL1 Silent p.R371R 0.37 TCGA-FW-A3R5-06 2 102968013 102968013 G A IL1RL1 Missense_Mutation p.E435K 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 2 103039731 103039731 G A IL18RAP 5'UTR 0.24 TCGA-FW-A3R5-06 2 103040467 103040467 G A IL18RAP Silent p.S89S 0.29 TCGA-FW-A3R5-06 2 103063558 103063558 C T IL18RAP Silent p.T367T 0.26 TCGA-FW-A3R5-06 2 103067330 103067330 C T IL18RAP Silent p.F411F 0.32 TCGA-FW-A3R5-06 2 103068524 103068524 G A IL18RAP Silent p.V561V 0.33 TCGA-FW-A3R5-06 2 103068633 103068633 G A IL18RAP Missense_Mutation p.E598K 0.35 tolerated(0.21) benign(0.008) TCGA-FW-A3R5-06 2 103120032 103120032 C T SLC9A4 Silent p.I282I 0.29 TCGA-FW-A3R5-06 2 103124627 103124627 C T SLC9A4 Nonsense_Mutation p.R430* 0.30 TCGA-FW-A3R5-06 2 103124631 103124631 G A SLC9A4 Missense_Mutation p.G431E 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 103124664 103124664 C T SLC9A4 Missense_Mutation p.P442L 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 103142729 103142729 G A SLC9A4 Silent p.K654K 0.25 TCGA-FW-A3R5-06 2 103142759 103142759 G A SLC9A4 Silent p.G664G 0.28 TCGA-FW-A3R5-06 2 103149037 103149037 G A SLC9A4 Missense_Mutation p.E763K 0.23 tolerated(0.41) benign(0.079) TCGA-FW-A3R5-06 2 103274171 103274171 C T SLC9A2 Silent p.L146L 0.20 TCGA-FW-A3R5-06 2 103299894 103299894 C T SLC9A2 Silent p.F393F 0.09 TCGA-FW-A3R5-06 2 103300777 103300777 C T SLC9A2 Silent p.F469F 0.26 TCGA-FW-A3R5-06 2 103310945 103310945 G A SLC9A2 Missense_Mutation p.E500K 0.17 deleterious(0.01) benign(0.135) TCGA-FW-A3R5-06 2 103311564 103311564 G A SLC9A2 Nonsense_Mutation p.W526* 0.20 TCGA-FW-A3R5-06 2 103321104 103321104 G A SLC9A2 Silent p.R649R 0.26 TCGA-FW-A3R5-06 2 103324856 103324856 G A SLC9A2 Missense_Mutation p.E783K 0.23 tolerated_low_confidence(0.15) benign(0.05) TCGA-FW-A3R5-06 2 10560075 10560075 C T HPCAL1 Silent p.F64F 0.10 TCGA-FW-A3R5-06 2 106509458 106509458 C T NCK2 Silent p.S323S 0.21 TCGA-FW-A3R5-06 2 106717498 106717498 G A UXS1 Intron 0.27 TCGA-FW-A3R5-06 2 107002817 107002817 G A PLGLA RNA 0.29 TCGA-FW-A3R5-06 2 107002828 107002828 G A PLGLA RNA 0.19 TCGA-FW-A3R5-06 2 107004058 107004058 G A PLGLA RNA 0.21 TCGA-FW-A3R5-06 2 107040036 107040036 C T RGPD3 Missense_Mutation p.E1463K 0.10 tolerated(0.06) probably_damaging(0.989) TCGA-FW-A3R5-06 2 107040194 107040194 C T RGPD3 Missense_Mutation p.R1410K 0.26 tolerated(0.29) possibly_damaging(0.897) TCGA-FW-A3R5-06 2 107041010 107041010 G A RGPD3 Missense_Mutation p.S1138F 0.38 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 2 107041545 107041545 C T RGPD3 Missense_Mutation p.G960S 0.20 tolerated(0.37) benign(0.011) TCGA-FW-A3R5-06 2 10712207 10712207 G A NOL10 Missense_Mutation p.S686L 0.29 tolerated_low_confidence(0.37) benign(0) TCGA-FW-A3R5-06 2 107423262 107423262 C T ST6GAL2 Missense_Mutation p.E488K 0.26 probably_damaging(1) TCGA-FW-A3R5-06 2 107450550 107450550 C T ST6GAL2 Silent p.E332E 0.24 TCGA-FW-A3R5-06 2 107459983 107459983 G A ST6GAL2 Missense_Mutation p.P151S 0.27 benign(0.035) TCGA-FW-A3R5-06 2 107460392 107460392 G A ST6GAL2 Silent p.F14F 0.26 TCGA-FW-A3R5-06 2 107460402 107460402 C T ST6GAL2 Missense_Mutation p.R11Q 0.33 benign(0.115) TCGA-FW-A3R5-06 2 108455370 108455370 G A RGPD4 Missense_Mutation p.E119K 0.31 deleterious(0) possibly_damaging(0.636) TCGA-FW-A3R5-06 2 108478146 108478146 C T RGPD4 Silent p.L719L 0.25 TCGA-FW-A3R5-06 2 108487399 108487399 C T RGPD4 Missense_Mutation p.S980L 0.28 deleterious(0.01) benign(0.269) TCGA-FW-A3R5-06 2 108487953 108487953 G A RGPD4 Missense_Mutation p.E1165K 0.10 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 2 108488296 108488296 G A RGPD4 Missense_Mutation p.R1279K 0.25 tolerated(0.1) benign(0.07) TCGA-FW-A3R5-06 2 108488490 108488490 C T RGPD4 Silent p.L1344L 0.28 TCGA-FW-A3R5-06 2 108622612 108622612 G A SLC5A7 Silent p.V283V 0.30 TCGA-FW-A3R5-06 2 108626796 108626796 C T SLC5A7 Missense_Mutation p.L408F 0.15 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 2 108869898 108869898 G A SULT1C3 Silent p.K133K 0.30 TCGA-FW-A3R5-06 2 108872050 108872050 C T SULT1C3 Missense_Mutation p.P141L 0.30 deleterious(0) benign(0.27) TCGA-FW-A3R5-06 2 108872051 108872051 C T SULT1C3 Silent p.P141P 0.30 TCGA-FW-A3R5-06 2 108998259 108998259 G A SULT1C4 Missense_Mutation p.E71K 0.26 tolerated(0.13) benign(0.005) TCGA-FW-A3R5-06 2 108998338 108998338 G A SULT1C4 Missense_Mutation p.G97E 0.18 tolerated(0.18) benign(0.005) TCGA-FW-A3R5-06 2 108999633 108999633 G A SULT1C4 Missense_Mutation p.G160R 0.36 deleterious(0) possibly_damaging(0.898) TCGA-FW-A3R5-06 2 109088468 109088468 C T GCC2 Missense_Mutation p.H895Y 0.19 tolerated(0.17) benign(0.039) TCGA-FW-A3R5-06 2 10911968 10911968 G A ATP6V1C2 Silent p.G158G 0.32 TCGA-FW-A3R5-06 2 109276190 109276190 C T LIMS1 Silent p.F104F 0.15 TCGA-FW-A3R5-06 2 109276206 109276206 G T LIMS1 Nonsense_Mutation p.G110* 0.18 TCGA-FW-A3R5-06 2 109411018 109411018 C T CCDC138 Silent p.T139T 0.29 TCGA-FW-A3R5-06 2 109489954 109489954 C T CCDC138 Missense_Mutation p.R581C 0.32 deleterious(0) benign(0.193) TCGA-FW-A3R5-06 2 109513544 109513544 C T EDAR Missense_Mutation p.G389E 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 109513549 109513549 C T EDAR Silent p.E387E 0.19 TCGA-FW-A3R5-06 2 110053528 110053528 C T SH3RF3 Missense_Mutation p.S585L 0.26 tolerated(0.08) possibly_damaging(0.631) TCGA-FW-A3R5-06 2 110065788 110065788 C T SH3RF3 Missense_Mutation p.P664L 0.23 deleterious(0.03) benign(0.158) TCGA-FW-A3R5-06 2 110303521 110303521 G A SEPT10 Intron 0.30 TCGA-FW-A3R5-06 2 11052763 11052763 G A KCNF1 Missense_Mutation p.D71N 0.33 tolerated(0.39) probably_damaging(0.999) TCGA-FW-A3R5-06 2 11052823 11052823 G A KCNF1 Missense_Mutation p.E91K 0.31 deleterious(0.02) benign(0.433) TCGA-FW-A3R5-06 2 11053221 11053221 G A KCNF1 Silent p.E223E 0.20 TCGA-FW-A3R5-06 2 11053475 11053475 C T KCNF1 Missense_Mutation p.S308L 0.19 deleterious(0) possibly_damaging(0.834) TCGA-FW-A3R5-06 2 110902115 110902115 G A NPHP1 Missense_Mutation p.P518S 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 111789272 111789272 C T ACOXL Silent p.S450S 0.23 TCGA-FW-A3R5-06 2 111850537 111850537 G A ACOXL Silent p.R512R 0.31 TCGA-FW-A3R5-06 2 112686832 112686832 C T MERTK Missense_Mutation p.S66L 0.24 deleterious_low_confidence(0.04) benign(0.02) TCGA-FW-A3R5-06 2 112732956 112732956 G A MERTK Missense_Mutation p.A351T 0.30 tolerated(0.06) probably_damaging(0.99) TCGA-FW-A3R5-06 2 112758801 112758801 C T MERTK Missense_Mutation p.S543F 0.37 tolerated(0.17) possibly_damaging(0.821) TCGA-FW-A3R5-06 2 112777075 112777075 G A MERTK Missense_Mutation p.R722Q 0.38 deleterious(0) possibly_damaging(0.9) TCGA-FW-A3R5-06 2 112786202 112786202 G A MERTK Missense_Mutation p.D921N 0.28 tolerated(0.11) benign(0.103) TCGA-FW-A3R5-06 2 11284107 11284107 C T C2orf50 Missense_Mutation p.P120L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 112944888 112944888 C T FBLN7 Silent p.I375I 0.34 TCGA-FW-A3R5-06 2 113089137 113089137 C T ZC3H6 Missense_Mutation p.P881L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 113343825 113343825 C T CHCHD5 Silent p.A64A 0.25 TCGA-FW-A3R5-06 2 113416991 113416991 C T SLC20A1 Missense_Mutation p.S420F 0.27 tolerated(0.29) benign(0.366) TCGA-FW-A3R5-06 2 113500229 113500229 G A NT5DC4 3'UTR 0.26 TCGA-FW-A3R5-06 2 113587942 113587942 G A IL1B Missense_Mutation p.S269F 0.18 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 2 113588899 113588899 C T IL1B Silent p.L189L 0.29 TCGA-FW-A3R5-06 2 113736250 113736250 G A IL36G Missense_Mutation p.G12E 0.31 tolerated_low_confidence(0.05) possibly_damaging(0.637) TCGA-FW-A3R5-06 2 113736846 113736846 G A IL36G Nonsense_Mutation p.W35* 0.17 TCGA-FW-A3R5-06 2 113736882 113736882 G A IL36G Missense_Mutation p.R47Q 0.22 deleterious(0.05) possibly_damaging(0.884) TCGA-FW-A3R5-06 2 113788622 113788622 C T IL36B Intron 0.34 TCGA-FW-A3R5-06 2 113788732 113788732 C T IL36B Missense_Mutation p.R5Q 0.31 tolerated_low_confidence(0.53) benign(0.003) TCGA-FW-A3R5-06 2 113817030 113817030 G A IL36RN Silent p.G5G 0.23 TCGA-FW-A3R5-06 2 113818501 113818501 G A IL36RN Silent p.G34G 0.23 TCGA-FW-A3R5-06 2 113832841 113832841 G A IL1F10 Nonsense_Mutation p.W120* 0.19 TCGA-FW-A3R5-06 2 113875512 113875512 C T IL1RN 5'UTR 0.30 TCGA-FW-A3R5-06 2 113875558 113875558 A T IL1RN 5'UTR 0.19 TCGA-FW-A3R5-06 2 113890408 113890408 G A IL1RN Missense_Mutation p.G168D 0.17 tolerated(0.22) benign(0.008) TCGA-FW-A3R5-06 2 113890437 113890437 G A IL1RN Missense_Mutation p.E178K 0.10 tolerated(0.17) benign(0.008) TCGA-FW-A3R5-06 2 113940669 113940669 G A PSD4 Silent p.G212G 0.16 TCGA-FW-A3R5-06 2 113940807 113940807 G A PSD4 Silent p.E258E 0.29 TCGA-FW-A3R5-06 2 113943595 113943595 C T PSD4 Missense_Mutation p.S464L 0.25 deleterious_low_confidence(0) benign(0.306) TCGA-FW-A3R5-06 2 113943683 113943683 G A PSD4 Silent p.L493L 0.27 TCGA-FW-A3R5-06 2 113950885 113950885 G A PSD4 Missense_Mutation p.R657Q 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 113953812 113953812 G A PSD4 Missense_Mutation p.D772N 0.25 tolerated(0.09) benign(0.059) TCGA-FW-A3R5-06 2 113955458 113955458 G A PSD4 Silent p.T864T 0.28 TCGA-FW-A3R5-06 2 113999136 113999136 C T PAX8 Missense_Mutation p.G257S 0.55 tolerated(1) benign(0.057) TCGA-FW-A3R5-06 2 113999206 113999206 G A PAX8 Silent p.L233L 0.48 TCGA-FW-A3R5-06 2 113999622 113999622 G A PAX8 Silent p.I188I 0.30 TCGA-FW-A3R5-06 2 113999705 113999705 G A PAX8 Missense_Mutation p.P161S 0.47 tolerated(0.18) probably_damaging(0.996) TCGA-FW-A3R5-06 2 114258135 114258135 C T FOXD4L1 3'UTR 0.50 TCGA-FW-A3R5-06 2 114398531 114398531 C T RABL2A Missense_Mutation p.R120W 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 114398994 114398994 C T RABL2A Silent p.F157F 0.26 TCGA-FW-A3R5-06 2 114670797 114670797 C T ACTR3 Silent p.I31I 0.25 TCGA-FW-A3R5-06 2 115200337 115200337 C T DPP10 5'UTR 0.41 TCGA-FW-A3R5-06 2 116548684 116548684 T G DPP10 Missense_Mutation p.M524R 0.23 tolerated(0.66) benign(0) TCGA-FW-A3R5-06 2 116548868 116548868 C T DPP10 Missense_Mutation p.P550S 0.27 tolerated(0.26) benign(0.119) TCGA-FW-A3R5-06 2 116599799 116599799 G T DPP10 Nonsense_Mutation p.E761* 0.18 TCGA-FW-A3R5-06 2 11702695 11702695 C T GREB1 Silent p.C88C 0.15 TCGA-FW-A3R5-06 2 11706749 11706749 T C GREB1 Silent p.L141L 0.28 TCGA-FW-A3R5-06 2 11718434 11718434 C T GREB1 Missense_Mutation p.R217W 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 11718523 11718523 G A GREB1 Silent p.T246T 0.25 TCGA-FW-A3R5-06 2 11721000 11721000 C T GREB1 Intron 0.32 TCGA-FW-A3R5-06 2 11725328 11725328 G A GREB1 Missense_Mutation p.G315R 0.38 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 2 11728976 11728976 G A GREB1 Missense_Mutation p.E422K 0.32 deleterious(0.02) possibly_damaging(0.666) TCGA-FW-A3R5-06 2 11758700 11758700 G A GREB1 Silent p.V1233V 0.23 TCGA-FW-A3R5-06 2 11765357 11765357 C T GREB1 Missense_Mutation p.P1409S 0.28 tolerated(0.06) benign(0.015) TCGA-FW-A3R5-06 2 11780534 11780534 C T GREB1 Missense_Mutation p.A1935V 0.15 deleterious(0.04) benign(0.341) TCGA-FW-A3R5-06 2 11809800 11809800 G A NTSR2 Silent p.T152T 0.40 TCGA-FW-A3R5-06 2 118753046 118753046 G A CCDC93 Silent p.A165A 0.27 TCGA-FW-A3R5-06 2 118764316 118764316 G A CCDC93 Missense_Mutation p.S78F 0.25 tolerated(0.1) probably_damaging(0.992) TCGA-FW-A3R5-06 2 11905848 11905848 C T LPIN1 Nonsense_Mutation p.R110* 0.32 TCGA-FW-A3R5-06 2 11944573 11944573 C T LPIN1 Missense_Mutation p.P729S 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-FW-A3R5-06 2 11964828 11964828 C T LPIN1 Missense_Mutation p.P947S 0.33 tolerated(0.24) benign(0.236) TCGA-FW-A3R5-06 2 119699940 119699940 C T MARCO Missense_Mutation p.H22Y 0.19 deleterious(0.04) benign(0.043) TCGA-FW-A3R5-06 2 119727714 119727714 G A MARCO Missense_Mutation p.R75Q 0.19 tolerated(0.46) benign(0.022) TCGA-FW-A3R5-06 2 119727715 119727715 G A MARCO Silent p.R75R 0.20 TCGA-FW-A3R5-06 2 119729101 119729101 G A MARCO Missense_Mutation p.G151S 0.31 deleterious(0.02) benign(0.117) TCGA-FW-A3R5-06 2 119731983 119731983 G A MARCO Missense_Mutation p.A179T 0.25 tolerated(0.31) probably_damaging(0.989) TCGA-FW-A3R5-06 2 119738993 119738993 G A MARCO Missense_Mutation p.G259R 0.32 deleterious(0) benign(0.226) TCGA-FW-A3R5-06 2 119750052 119750052 G A MARCO Missense_Mutation p.G418S 0.18 tolerated(0.05) unknown(0) TCGA-FW-A3R5-06 2 119750854 119750854 G A MARCO Silent p.R469R 0.22 TCGA-FW-A3R5-06 2 120005392 120005392 G A STEAP3 Silent p.P220P 0.23 TCGA-FW-A3R5-06 2 120097505 120097505 G A C2orf76 Missense_Mutation p.R11C 0.21 deleterious(0.04) benign(0.302) TCGA-FW-A3R5-06 2 120197669 120197669 C T SCTR 3'UTR 0.23 TCGA-FW-A3R5-06 2 120197765 120197765 G A SCTR Silent p.A417A 0.16 TCGA-FW-A3R5-06 2 120369247 120369247 A T PCDP1 Missense_Mutation p.I414F 0.27 deleterious(0.05) benign(0.031) TCGA-FW-A3R5-06 2 120369297 120369297 G A PCDP1 Silent p.R430R 0.14 TCGA-FW-A3R5-06 2 120387522 120387522 C T PCDP1 Silent p.F574F 0.33 TCGA-FW-A3R5-06 2 120438714 120438714 C T TMEM177 Silent p.F95F 0.32 TCGA-FW-A3R5-06 2 120889255 120889255 C T EPB41L5 Silent p.S521S 0.21 TCGA-FW-A3R5-06 2 120903838 120903838 C T EPB41L5 Missense_Mutation p.A589V 0.31 tolerated(0.05) benign(0.11) TCGA-FW-A3R5-06 2 120903846 120903846 C T EPB41L5 Nonsense_Mutation p.Q592* 0.27 TCGA-FW-A3R5-06 2 120922487 120922487 G A EPB41L5 Splice_Site p.X654_splice 0.27 TCGA-FW-A3R5-06 2 121106698 121106698 C T INHBB Missense_Mutation p.R158C 0.30 deleterious(0.05) possibly_damaging(0.825) TCGA-FW-A3R5-06 2 121107018 121107018 C T INHBB Silent p.F264F 0.29 TCGA-FW-A3R5-06 2 121107034 121107034 G A INHBB Missense_Mutation p.E270K 0.30 deleterious(0.03) possibly_damaging(0.881) TCGA-FW-A3R5-06 2 121107038 121107038 C T INHBB Missense_Mutation p.S271L 0.17 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 2 121107470 121107470 G A INHBB 3'UTR 0.41 TCGA-FW-A3R5-06 2 121708823 121708823 C T GLI2 Missense_Mutation p.P87S 0.13 tolerated(0.24) benign(0.242) TCGA-FW-A3R5-06 2 121745926 121745926 G A GLI2 Silent p.T812T 0.35 TCGA-FW-A3R5-06 2 121747721 121747721 G A GLI2 Missense_Mutation p.E1411K 0.22 tolerated(0.07) benign(0.339) TCGA-FW-A3R5-06 2 121747930 121747930 G A GLI2 Silent p.Q1480Q 0.26 TCGA-FW-A3R5-06 2 122007186 122007186 C T TFCP2L1 Silent p.K84K 0.27 TCGA-FW-A3R5-06 2 122485280 122485280 G A NIFK 3'UTR 0.22 TCGA-FW-A3R5-06 2 122522952 122522952 C T TSN 3'UTR 0.23 TCGA-FW-A3R5-06 2 124979297 124979297 C T CNTNAP5 Missense_Mutation p.P33L 0.21 deleterious(0) benign(0.33) TCGA-FW-A3R5-06 2 1251138 1251138 G A SNTG2 Missense_Mutation p.A310T 0.27 tolerated(0.51) benign(0.005) TCGA-FW-A3R5-06 2 125175031 125175031 A G CNTNAP5 Silent p.G131G 0.22 TCGA-FW-A3R5-06 2 125192248 125192248 C T CNTNAP5 Silent p.A239A 0.21 TCGA-FW-A3R5-06 2 125284948 125284948 C T CNTNAP5 Nonsense_Mutation p.Q521* 0.28 TCGA-FW-A3R5-06 2 125367398 125367398 G A CNTNAP5 Missense_Mutation p.E592K 0.17 deleterious(0) benign(0.414) TCGA-FW-A3R5-06 2 125405466 125405466 G A CNTNAP5 Missense_Mutation p.D669N 0.24 tolerated(0.82) benign(0.005) TCGA-FW-A3R5-06 2 125530386 125530386 G A CNTNAP5 Silent p.E847E 0.20 TCGA-FW-A3R5-06 2 125555795 125555795 G A CNTNAP5 Missense_Mutation p.E1038K 0.38 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 2 125555862 125555862 C T CNTNAP5 Missense_Mutation p.S1060F 0.11 tolerated(0.39) benign(0.012) TCGA-FW-A3R5-06 2 125671718 125671718 G A CNTNAP5 Missense_Mutation p.M1258I 0.32 tolerated(0.45) probably_damaging(0.989) TCGA-FW-A3R5-06 2 125671766 125671766 G A CNTNAP5 Missense_Mutation p.M1274I 0.31 tolerated(0.31) benign(0.002) TCGA-FW-A3R5-06 2 1263213 1263213 G A SNTG2 Silent p.K359K 0.28 TCGA-FW-A3R5-06 2 1271213 1271213 G A SNTG2 Missense_Mutation p.R385K 0.35 tolerated(0.1) benign(0.146) TCGA-FW-A3R5-06 2 127805985 127805985 C T BIN1 3'UTR 0.33 TCGA-FW-A3R5-06 2 127944882 127944882 C T CYP27C1 Missense_Mutation p.G362R 0.34 tolerated(0.78) benign(0.424) TCGA-FW-A3R5-06 2 127944915 127944915 G A CYP27C1 Missense_Mutation p.H351Y 0.32 tolerated(0.07) benign(0.226) TCGA-FW-A3R5-06 2 127958729 127958729 G A CYP27C1 Silent p.F119F 0.06 TCGA-FW-A3R5-06 2 127961109 127961109 C T CYP27C1 Missense_Mutation p.R6K 0.11 tolerated(0.47) benign(0.092) TCGA-FW-A3R5-06 2 128029016 128029016 G A ERCC3 Missense_Mutation p.S614L 0.32 deleterious(0) possibly_damaging(0.843) TCGA-FW-A3R5-06 2 128177561 128177561 G A PROC Missense_Mutation p.G15R 0.25 tolerated(0.15) benign(0.062) TCGA-FW-A3R5-06 2 128178990 128178990 G A PROC Missense_Mutation p.E68K 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 128186115 128186115 G A PROC Missense_Mutation p.E327K 0.25 deleterious(0.03) benign(0.435) TCGA-FW-A3R5-06 2 128186496 128186496 G A PROC Missense_Mutation p.A454T 0.08 tolerated(0.05) benign(0.007) TCGA-FW-A3R5-06 2 128238618 128238618 G A IWS1 3'UTR 0.31 TCGA-FW-A3R5-06 2 128322868 128322868 C T MYO7B Nonsense_Mutation p.Q65* 0.16 TCGA-FW-A3R5-06 2 128324308 128324308 C T MYO7B Missense_Mutation p.H126Y 0.22 deleterious(0.01) possibly_damaging(0.545) TCGA-FW-A3R5-06 2 128335798 128335798 G A MYO7B Missense_Mutation p.E314K 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 128341841 128341841 G A MYO7B Silent p.L496L 0.20 TCGA-FW-A3R5-06 2 128342354 128342354 G A MYO7B Missense_Mutation p.G519E 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 128342409 128342409 C T MYO7B Silent p.A537A 0.17 TCGA-FW-A3R5-06 2 128390830 128390830 C T MYO7B Intron 0.29 TCGA-FW-A3R5-06 2 128463994 128463994 C T WDR33 Missense_Mutation p.R1305Q 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 2 128477162 128477162 G A WDR33 Missense_Mutation p.P813S 0.23 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 2 128477498 128477498 G A WDR33 Missense_Mutation p.P701S 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A3R5-06 2 128753978 128753978 G A SAP130 Missense_Mutation p.S460F 0.08 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-FW-A3R5-06 2 128775310 128775310 G A SAP130 Missense_Mutation p.P124S 0.08 deleterious_low_confidence(0.02) benign(0.165) TCGA-FW-A3R5-06 2 128865607 128865607 C T UGGT1 Missense_Mutation p.R125C 0.31 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 2 128873892 128873892 C T UGGT1 Nonsense_Mutation p.Q283* 0.27 TCGA-FW-A3R5-06 2 128928849 128928849 C T UGGT1 Missense_Mutation p.P1032L 0.23 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 2 130738443 130738443 C T RAB6C Missense_Mutation p.S252L 0.26 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-FW-A3R5-06 2 130792786 130792786 C T FAR2P1 5'Flank 0.39 TCGA-FW-A3R5-06 2 130831715 130831715 A T POTEF 3'UTR 0.22 TCGA-FW-A3R5-06 2 130831811 130831811 G A POTEF 3'UTR 0.30 TCGA-FW-A3R5-06 2 130832813 130832813 C T POTEF Missense_Mutation p.M744I 0.30 deleterious_low_confidence(0.03) benign(0.172) TCGA-FW-A3R5-06 2 130833010 130833010 C T POTEF Missense_Mutation p.D679N 0.09 deleterious_low_confidence(0.01) benign(0.118) TCGA-FW-A3R5-06 2 130833139 130833139 G A POTEF Missense_Mutation p.L636F 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FW-A3R5-06 2 130865584 130865584 G A POTEF Missense_Mutation p.P375L 0.12 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-FW-A3R5-06 2 130877816 130877816 C T POTEF Missense_Mutation p.M91I 0.10 deleterious_low_confidence(0.01) benign(0.05) TCGA-FW-A3R5-06 2 130877827 130877827 C T POTEF Missense_Mutation p.D88N 0.05 tolerated_low_confidence(0.21) benign(0.073) TCGA-FW-A3R5-06 2 130878039 130878039 G A POTEF Missense_Mutation p.P17L 0.08 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 130897787 130897787 C T CCDC74B Missense_Mutation p.E281K 0.19 deleterious(0.01) benign(0.079) TCGA-FW-A3R5-06 2 130911970 130911970 G A SMPD4 Silent p.F552F 0.33 TCGA-FW-A3R5-06 2 130932542 130932542 G A SMPD4 Missense_Mutation p.P63L 0.27 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 2 130952776 130952776 C T TUBA3E Missense_Mutation p.R84K 0.21 tolerated_low_confidence(0.2) benign(0.001) TCGA-FW-A3R5-06 2 131356248 131356248 C T CFC1 Missense_Mutation p.E72K 0.12 tolerated(0.69) benign(0.04) TCGA-FW-A3R5-06 2 131487659 131487659 C T GPR148 Missense_Mutation p.P312L 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 2 131519752 131519752 C T AMER3 Missense_Mutation p.P36L 0.21 tolerated(0.6) benign(0.004) TCGA-FW-A3R5-06 2 131519878 131519878 C T AMER3 Missense_Mutation p.P78L 0.41 tolerated(0.69) benign(0.011) TCGA-FW-A3R5-06 2 131520004 131520004 C T AMER3 Missense_Mutation p.S120F 0.39 deleterious(0.01) benign(0.048) TCGA-FW-A3R5-06 2 131520248 131520248 C T AMER3 Silent p.F201F 0.29 TCGA-FW-A3R5-06 2 131520398 131520398 G A AMER3 Silent p.G251G 0.26 TCGA-FW-A3R5-06 2 131520981 131520981 G A AMER3 Missense_Mutation p.E446K 0.29 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 2 131521621 131521621 G A AMER3 Missense_Mutation p.R659K 0.26 tolerated(0.29) benign(0.036) TCGA-FW-A3R5-06 2 131521956 131521956 G A AMER3 Missense_Mutation p.E771K 0.30 deleterious(0.05) benign(0.013) TCGA-FW-A3R5-06 2 131522171 131522171 C T AMER3 Silent p.L842L 0.30 TCGA-FW-A3R5-06 2 131976126 131976126 G A POTEE Missense_Mutation p.D51N 0.06 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-FW-A3R5-06 2 131976248 131976248 G A POTEE Missense_Mutation p.M91I 0.18 deleterious_low_confidence(0.01) benign(0.019) TCGA-FW-A3R5-06 2 131976432 131976432 C T POTEE Missense_Mutation p.P153S 0.15 deleterious_low_confidence(0) benign(0.004) TCGA-FW-A3R5-06 2 131985897 131985897 C T POTEE Missense_Mutation p.S333F 0.15 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-FW-A3R5-06 2 131988457 131988457 C T POTEE Silent p.I368I 0.32 TCGA-FW-A3R5-06 2 132021043 132021043 G A POTEE Missense_Mutation p.R672K 0.10 deleterious_low_confidence(0.02) benign(0.009) TCGA-FW-A3R5-06 2 132021437 132021437 C T POTEE Silent p.I803I 0.27 TCGA-FW-A3R5-06 2 132110631 132110631 G A AC073869.2 RNA 0.16 TCGA-FW-A3R5-06 2 132110674 132110674 C T AC073869.2 RNA 0.20 TCGA-FW-A3R5-06 2 132237666 132237666 G A TUBA3D Missense_Mutation p.G134S 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 132277224 132277224 C T AC093838.4 RNA 0.21 TCGA-FW-A3R5-06 2 132288272 132288272 C T CCDC74A Missense_Mutation p.S139F 0.17 tolerated(0.07) possibly_damaging(0.534) TCGA-FW-A3R5-06 2 132290506 132290506 C T CCDC74A Missense_Mutation p.P316S 0.28 tolerated(0.06) possibly_damaging(0.546) TCGA-FW-A3R5-06 2 132558561 132558561 G A C2orf27B 5'UTR 0.27 TCGA-FW-A3R5-06 2 133174571 133174571 G A GPR39 5'UTR 0.23 TCGA-FW-A3R5-06 2 133175158 133175158 G A GPR39 Silent p.V181V 0.24 TCGA-FW-A3R5-06 2 133489348 133489348 C T NCKAP5 Missense_Mutation p.R1802K 0.33 tolerated(0.08) benign(0.237) TCGA-FW-A3R5-06 2 133540263 133540263 G A NCKAP5 Missense_Mutation p.P1374L 0.31 tolerated(0.08) benign(0.05) TCGA-FW-A3R5-06 2 133540322 133540322 G A NCKAP5 Silent p.S1354S 0.30 TCGA-FW-A3R5-06 2 133540419 133540419 G A NCKAP5 Missense_Mutation p.S1322F 0.11 tolerated(0.76) benign(0.081) TCGA-FW-A3R5-06 2 133540465 133540465 C T NCKAP5 Missense_Mutation p.E1307K 0.30 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 2 133541680 133541680 C T NCKAP5 Missense_Mutation p.E902K 0.25 deleterious(0.02) benign(0.281) TCGA-FW-A3R5-06 2 133541971 133541971 G A NCKAP5 Missense_Mutation p.P805S 0.07 tolerated(1) benign(0) TCGA-FW-A3R5-06 2 133542542 133542542 C T NCKAP5 Silent p.V614V 0.30 TCGA-FW-A3R5-06 2 133543015 133543015 G A NCKAP5 Silent p.L457L 0.22 TCGA-FW-A3R5-06 2 133543152 133543152 C T NCKAP5 Missense_Mutation p.R411Q 0.34 tolerated(0.31) benign(0.08) TCGA-FW-A3R5-06 2 135260556 135260556 G A TMEM163 Silent p.I157I 0.40 TCGA-FW-A3R5-06 2 135625210 135625210 G A ACMSD Missense_Mutation p.R183Q 0.35 tolerated(0.05) benign(0.432) TCGA-FW-A3R5-06 2 135744367 135744367 G A MAP3K19 Missense_Mutation p.P692L 0.31 deleterious(0.01) benign(0.086) TCGA-FW-A3R5-06 2 135745671 135745671 C A MAP3K19 Missense_Mutation p.E257D 0.29 tolerated(0.08) benign(0.055) TCGA-FW-A3R5-06 2 135757541 135757541 G A MAP3K19 Nonsense_Mutation p.Q94* 0.08 TCGA-FW-A3R5-06 2 135779312 135779312 G A MAP3K19 Silent p.I37I 0.33 TCGA-FW-A3R5-06 2 136111119 136111119 G A ZRANB3 Missense_Mutation p.P87L 0.31 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 2 136481641 136481641 C T R3HDM1 Missense_Mutation p.R1027C 0.27 tolerated(0.12) benign(0.001) TCGA-FW-A3R5-06 2 136537829 136537829 C T UBXN4 Missense_Mutation p.P421L 0.26 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 2 136561642 136561642 C T LCT Silent p.E1507E 0.25 TCGA-FW-A3R5-06 2 136562339 136562339 G A LCT Nonsense_Mutation p.Q1488* 0.35 TCGA-FW-A3R5-06 2 136562369 136562369 C T LCT Missense_Mutation p.D1478N 0.29 tolerated(0.22) benign(0.048) TCGA-FW-A3R5-06 2 136562429 136562429 G A LCT Missense_Mutation p.P1458S 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 136564711 136564711 G A LCT Missense_Mutation p.S1387F 0.17 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 2 136566094 136566094 C T LCT Missense_Mutation p.G1275R 0.31 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 2 136566468 136566468 G A LCT Missense_Mutation p.S1150F 0.39 tolerated(0.67) possibly_damaging(0.694) TCGA-FW-A3R5-06 2 136566685 136566685 C T LCT Missense_Mutation p.E1078K 0.36 tolerated(0.83) benign(0.005) TCGA-FW-A3R5-06 2 136570068 136570068 G A LCT Silent p.S722S 0.32 TCGA-FW-A3R5-06 2 136575102 136575102 C T LCT Missense_Mutation p.D506N 0.33 deleterious(0.04) benign(0.367) TCGA-FW-A3R5-06 2 136575346 136575346 C T LCT Silent p.A424A 0.24 TCGA-FW-A3R5-06 2 136575371 136575371 G A LCT Missense_Mutation p.P416L 0.35 tolerated(0.38) benign(0.002) TCGA-FW-A3R5-06 2 136575497 136575497 C T LCT Missense_Mutation p.R374K 0.26 tolerated(0.06) possibly_damaging(0.786) TCGA-FW-A3R5-06 2 136575565 136575565 C T LCT Silent p.T351T 0.28 TCGA-FW-A3R5-06 2 136587237 136587237 C T LCT Missense_Mutation p.D244N 0.29 deleterious(0.01) possibly_damaging(0.907) TCGA-FW-A3R5-06 2 136610419 136610419 G A MCM6 Missense_Mutation p.R565C 0.29 tolerated(0.07) benign(0.117) TCGA-FW-A3R5-06 2 136620245 136620245 G A MCM6 Silent p.T384T 0.31 TCGA-FW-A3R5-06 2 136872763 136872763 G A CXCR4 Silent p.I249I 0.14 TCGA-FW-A3R5-06 2 137748500 137748500 A T THSD7B Intron 0.55 TCGA-FW-A3R5-06 2 137852557 137852557 G A THSD7B Silent p.G355G 0.31 TCGA-FW-A3R5-06 2 137928403 137928403 C T THSD7B Missense_Mutation p.P540S 0.26 deleterious(0.01) possibly_damaging(0.803) TCGA-FW-A3R5-06 2 137928454 137928454 G A THSD7B Missense_Mutation p.G557R 0.29 deleterious(0.02) probably_damaging(0.979) TCGA-FW-A3R5-06 2 138000129 138000129 G A THSD7B Silent p.R751R 0.34 TCGA-FW-A3R5-06 2 138163315 138163315 C T THSD7B Missense_Mutation p.S878F 0.23 deleterious(0) possibly_damaging(0.683) TCGA-FW-A3R5-06 2 138169253 138169253 G A THSD7B Missense_Mutation p.D924N 0.35 tolerated(0.24) possibly_damaging(0.728) TCGA-FW-A3R5-06 2 138208520 138208520 T C THSD7B Missense_Mutation p.I1022T 0.30 deleterious(0.03) unknown(0) TCGA-FW-A3R5-06 2 138378212 138378212 C T THSD7B Missense_Mutation p.P1242S 0.34 tolerated(1) unknown(0) TCGA-FW-A3R5-06 2 138400170 138400170 G A THSD7B Nonsense_Mutation p.W1307* 0.29 TCGA-FW-A3R5-06 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.24 deleterious(0.02) unknown(0) TCGA-FW-A3R5-06 2 138739033 138739033 C T HNMT Intron 0.31 TCGA-FW-A3R5-06 2 139326544 139326544 C T SPOPL Missense_Mutation p.S358F 0.28 tolerated(0.06) benign(0.125) TCGA-FW-A3R5-06 2 139428696 139428696 C T NXPH2 Silent p.A197A 0.34 TCGA-FW-A3R5-06 2 139429023 139429023 C T NXPH2 Silent p.T88T 0.64 TCGA-FW-A3R5-06 2 140990817 140990817 C T LRP1B Missense_Mutation p.D4580N 0.22 possibly_damaging(0.539) TCGA-FW-A3R5-06 2 140990874 140990874 C T LRP1B Missense_Mutation p.V4561I 0.28 benign(0.097) TCGA-FW-A3R5-06 2 141079606 141079606 G A LRP1B Missense_Mutation p.P4189L 0.18 possibly_damaging(0.713) TCGA-FW-A3R5-06 2 141081603 141081603 C T LRP1B Missense_Mutation p.E4125K 0.24 benign(0.292) TCGA-FW-A3R5-06 2 141093193 141093193 G A LRP1B Missense_Mutation p.P4036L 0.27 possibly_damaging(0.713) TCGA-FW-A3R5-06 2 141108493 141108493 C T LRP1B Missense_Mutation p.R3922K 0.09 benign(0.067) TCGA-FW-A3R5-06 2 141116507 141116507 G A LRP1B Missense_Mutation p.L3714F 0.29 benign(0.004) TCGA-FW-A3R5-06 2 141128297 141128297 C T LRP1B Missense_Mutation p.E3664K 0.32 possibly_damaging(0.621) TCGA-FW-A3R5-06 2 141128790 141128790 C T LRP1B Silent p.L3611L 0.28 TCGA-FW-A3R5-06 2 141135801 141135801 G A LRP1B Missense_Mutation p.S3529F 0.27 possibly_damaging(0.788) TCGA-FW-A3R5-06 2 141215075 141215075 G A LRP1B Silent p.A3257A 0.08 TCGA-FW-A3R5-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.28 TCGA-FW-A3R5-06 2 141243024 141243024 C T LRP1B Missense_Mutation p.D3105N 0.33 possibly_damaging(0.539) TCGA-FW-A3R5-06 2 141260537 141260537 C T LRP1B Missense_Mutation p.S2886N 0.17 benign(0.213) TCGA-FW-A3R5-06 2 141359167 141359167 C T LRP1B Missense_Mutation p.D2281N 0.23 possibly_damaging(0.539) TCGA-FW-A3R5-06 2 141457966 141457966 G A LRP1B Missense_Mutation p.P2218S 0.12 possibly_damaging(0.641) TCGA-FW-A3R5-06 2 141457967 141457967 A T LRP1B Missense_Mutation p.N2217K 0.12 benign(0.403) TCGA-FW-A3R5-06 2 141459834 141459834 G A LRP1B Missense_Mutation p.R2060C 0.07 possibly_damaging(0.689) TCGA-FW-A3R5-06 2 141473643 141473643 G A LRP1B Silent p.F1974F 0.24 TCGA-FW-A3R5-06 2 141526869 141526869 C T LRP1B Missense_Mutation p.G1891R 0.15 probably_damaging(0.953) TCGA-FW-A3R5-06 2 141597566 141597566 G A LRP1B Missense_Mutation p.P1735S 0.17 possibly_damaging(0.641) TCGA-FW-A3R5-06 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.28 TCGA-FW-A3R5-06 2 141609344 141609344 G A LRP1B Missense_Mutation p.P1530S 0.26 benign(0.006) TCGA-FW-A3R5-06 2 141625347 141625347 C T LRP1B Missense_Mutation p.R1464Q 0.24 benign(0.009) TCGA-FW-A3R5-06 2 141660725 141660725 G A LRP1B Missense_Mutation p.S1177L 0.36 benign(0.32) TCGA-FW-A3R5-06 2 141709478 141709478 G A LRP1B Silent p.F973F 0.29 TCGA-FW-A3R5-06 2 1418203 1418203 C T TPO Missense_Mutation p.S8F 0.32 deleterious(0.01) benign(0.248) TCGA-FW-A3R5-06 2 142237983 142237983 C T LRP1B Missense_Mutation p.E109K 0.17 possibly_damaging(0.635) TCGA-FW-A3R5-06 2 142238075 142238075 G A LRP1B Missense_Mutation p.P78L 0.11 possibly_damaging(0.908) TCGA-FW-A3R5-06 2 143712381 143712381 G A KYNU Missense_Mutation p.A126T 0.27 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 2 1437209 1437209 G A TPO Splice_Site p.X60_splice 0.11 TCGA-FW-A3R5-06 2 1437219 1437219 G A TPO Silent p.K63K 0.34 TCGA-FW-A3R5-06 2 143986231 143986231 C T ARHGAP15 Silent p.S126S 0.37 TCGA-FW-A3R5-06 2 144276933 144276933 G A ARHGAP15 Missense_Mutation p.G309S 0.26 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 2 1457560 1457560 C T TPO Missense_Mutation p.P193S 0.18 tolerated(0.2) possibly_damaging(0.457) TCGA-FW-A3R5-06 2 1459935 1459935 G A TPO Missense_Mutation p.G234R 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 14774070 14774070 C T FAM84A Intron 0.36 TCGA-FW-A3R5-06 2 1488383 1488383 G A TPO Missense_Mutation p.D452N 0.35 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 1488413 1488413 G A TPO Missense_Mutation p.A462T 0.36 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 2 1488505 1488505 C T TPO Silent p.F492F 0.18 TCGA-FW-A3R5-06 2 149227596 149227596 C T MBD5 Missense_Mutation p.S695L 0.27 tolerated(0.15) possibly_damaging(0.504) TCGA-FW-A3R5-06 2 149227972 149227972 C T MBD5 Silent p.S820S 0.23 TCGA-FW-A3R5-06 2 149241047 149241047 C T MBD5 Intron 0.36 TCGA-FW-A3R5-06 2 149260061 149260061 C T MBD5 Silent p.V1440V 0.16 TCGA-FW-A3R5-06 2 149260062 149260062 C T MBD5 Missense_Mutation p.R1441W 0.16 deleterious(0) unknown(0) TCGA-FW-A3R5-06 2 149511697 149511697 C T EPC2 Nonsense_Mutation p.R221* 0.32 TCGA-FW-A3R5-06 2 149528610 149528610 C T EPC2 Intron 0.18 TCGA-FW-A3R5-06 2 149840229 149840229 G A KIF5C Silent p.L555L 0.29 TCGA-FW-A3R5-06 2 149853837 149853837 G A KIF5C Missense_Mutation p.D695N 0.23 tolerated(0.14) benign(0.003) TCGA-FW-A3R5-06 2 150327397 150327397 C T LYPD6 3'UTR 0.28 TCGA-FW-A3R5-06 2 1507763 1507763 C T TPO Silent p.A810A 0.30 TCGA-FW-A3R5-06 2 151328151 151328151 G A RND3 Missense_Mutation p.S158F 0.06 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 2 152107524 152107524 G A RBM43 Silent p.L324L 0.26 TCGA-FW-A3R5-06 2 152235965 152235965 C T TNFAIP6 Missense_Mutation p.S251F 0.23 deleterious(0.03) benign(0.172) TCGA-FW-A3R5-06 2 152319619 152319619 C T RIF1 Silent p.F1195F 0.32 TCGA-FW-A3R5-06 2 152394450 152394450 C T NEB Nonsense_Mutation p.W7013* 0.24 TCGA-FW-A3R5-06 2 152402475 152402475 C T NEB Missense_Mutation p.R6835Q 0.36 benign(0.041) TCGA-FW-A3R5-06 2 152423746 152423746 C T NEB Nonsense_Mutation p.W6031* 0.28 TCGA-FW-A3R5-06 2 152468714 152468714 G A NEB Silent p.L3931L 0.16 TCGA-FW-A3R5-06 2 152470822 152470822 G A NEB Nonsense_Mutation p.Q3857* 0.32 TCGA-FW-A3R5-06 2 152490375 152490375 G A NEB Silent p.I3069I 0.25 TCGA-FW-A3R5-06 2 152496920 152496920 G A NEB Silent p.P2878P 0.23 TCGA-FW-A3R5-06 2 152496921 152496921 G A NEB Missense_Mutation p.P2878L 0.23 probably_damaging(1) TCGA-FW-A3R5-06 2 152499804 152499804 C T NEB Missense_Mutation p.E2674K 0.23 benign(0.395) TCGA-FW-A3R5-06 2 152507129 152507129 C T NEB Missense_Mutation p.D2396N 0.28 benign(0.054) TCGA-FW-A3R5-06 2 152515623 152515623 G A NEB Missense_Mutation p.P2011S 0.29 probably_damaging(1) TCGA-FW-A3R5-06 2 152518823 152518823 C T NEB Missense_Mutation p.M1932I 0.11 benign(0.103) TCGA-FW-A3R5-06 2 152520314 152520314 C T NEB Silent p.L1837L 0.23 TCGA-FW-A3R5-06 2 152521994 152521994 C T NEB Silent p.E1697E 0.32 TCGA-FW-A3R5-06 2 152524385 152524385 C T NEB Missense_Mutation p.G1551D 0.29 probably_damaging(1) TCGA-FW-A3R5-06 2 152534253 152534253 C T NEB Missense_Mutation p.M1200I 0.24 benign(0.356) TCGA-FW-A3R5-06 2 152544005 152544005 C T NEB Missense_Mutation p.M855I 0.10 possibly_damaging(0.577) TCGA-FW-A3R5-06 2 152553713 152553713 C T NEB Silent p.Q473Q 0.19 TCGA-FW-A3R5-06 2 152554067 152554067 G A NEB Silent p.F416F 0.08 TCGA-FW-A3R5-06 2 152695833 152695833 G A CACNB4 Silent p.L455L 0.30 TCGA-FW-A3R5-06 2 152737379 152737379 C T CACNB4 Missense_Mutation p.E109K 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-FW-A3R5-06 2 152737408 152737408 G T CACNB4 Missense_Mutation p.T99K 0.31 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 15326904 15326904 G A NBAS Missense_Mutation p.R2225C 0.24 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 2 153417432 153417432 G A FMNL2 Missense_Mutation p.S160N 0.29 benign(0.07) TCGA-FW-A3R5-06 2 153476190 153476190 G A FMNL2 Missense_Mutation p.G599R 0.29 probably_damaging(0.979) TCGA-FW-A3R5-06 2 153497395 153497395 G A FMNL2 Missense_Mutation p.G1046R 0.20 probably_damaging(0.979) TCGA-FW-A3R5-06 2 15415903 15415903 G A NBAS Missense_Mutation p.P1810L 0.20 deleterious(0) possibly_damaging(0.49) TCGA-FW-A3R5-06 2 1544488 1544488 C T TPO Missense_Mutation p.S914L 0.31 tolerated_low_confidence(0.26) benign(0.001) TCGA-FW-A3R5-06 2 15448386 15448386 G A NBAS Missense_Mutation p.A1584V 0.27 tolerated(0.31) benign(0.006) TCGA-FW-A3R5-06 2 155098568 155098568 G A GALNT13 Missense_Mutation p.E113K 0.38 tolerated(0.99) benign(0) TCGA-FW-A3R5-06 2 155295167 155295167 C T GALNT13 Missense_Mutation p.L487F 0.27 tolerated(0.26) benign(0.044) TCGA-FW-A3R5-06 2 155555305 155555305 G A KCNJ3 Silent p.R6R 0.11 TCGA-FW-A3R5-06 2 155555713 155555713 C T KCNJ3 Silent p.A142A 0.26 TCGA-FW-A3R5-06 2 155566292 155566292 G A KCNJ3 Missense_Mutation p.E294K 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 155711257 155711257 G A KCNJ3 Missense_Mutation p.R313Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 15601415 15601415 G A NBAS Missense_Mutation p.S750F 0.18 deleterious(0) possibly_damaging(0.567) TCGA-FW-A3R5-06 2 15608549 15608549 G A NBAS Silent p.L612L 0.21 TCGA-FW-A3R5-06 2 157186322 157186322 G A NR4A2 Missense_Mutation p.S126L 0.36 tolerated(0.06) benign(0.217) TCGA-FW-A3R5-06 2 158114750 158114750 G A GALNT5 Silent p.R52R 0.25 TCGA-FW-A3R5-06 2 158142628 158142628 G A GALNT5 Missense_Mutation p.G575R 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 158272456 158272456 C A CYTIP Missense_Mutation p.R271S 0.33 tolerated(0.86) benign(0.11) TCGA-FW-A3R5-06 2 158283902 158283902 C T CYTIP Silent p.L169L 0.33 TCGA-FW-A3R5-06 2 158291210 158291210 C T CYTIP Missense_Mutation p.R75K 0.21 deleterious(0.01) benign(0.09) TCGA-FW-A3R5-06 2 158395161 158395161 G A ACVR1C Missense_Mutation p.S427L 0.19 deleterious(0) possibly_damaging(0.585) TCGA-FW-A3R5-06 2 158443811 158443811 G A ACVR1C Silent p.V64V 0.27 TCGA-FW-A3R5-06 2 158634709 158634709 G A ACVR1 Silent p.P159P 0.28 TCGA-FW-A3R5-06 2 158974352 158974352 C T UPP2 Missense_Mutation p.P176L 0.10 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 2 158974353 158974353 C T UPP2 Silent p.P176P 0.10 TCGA-FW-A3R5-06 2 158974450 158974450 G A UPP2 Missense_Mutation p.G209R 0.23 deleterious(0.02) possibly_damaging(0.859) TCGA-FW-A3R5-06 2 159028717 159028717 G A CCDC148 Missense_Mutation p.H562Y 0.08 deleterious(0.04) possibly_damaging(0.607) TCGA-FW-A3R5-06 2 159165961 159165961 G A CCDC148 Missense_Mutation p.A365V 0.28 deleterious(0.02) possibly_damaging(0.866) TCGA-FW-A3R5-06 2 159166008 159166008 C T CCDC148 Missense_Mutation p.M349I 0.10 tolerated(0.49) benign(0.216) TCGA-FW-A3R5-06 2 159499093 159499093 C T PKP4 Silent p.L597L 0.18 TCGA-FW-A3R5-06 2 159672397 159672397 G A DAPL1 3'UTR 0.30 TCGA-FW-A3R5-06 2 160035504 160035504 C T TANC1 Silent p.G780G 0.18 TCGA-FW-A3R5-06 2 160050863 160050863 C T TANC1 Silent p.G946G 0.28 TCGA-FW-A3R5-06 2 160604751 160604751 C T MARCH7 Missense_Mutation p.S317F 0.37 deleterious(0.04) possibly_damaging(0.812) TCGA-FW-A3R5-06 2 160708785 160708785 G A LY75-CD302 Missense_Mutation p.S937L 0.22 tolerated(0.37) probably_damaging(0.947) TCGA-FW-A3R5-06 2 160710199 160710199 C T LY75-CD302 Missense_Mutation p.D869N 0.28 tolerated(0.2) benign(0.021) TCGA-FW-A3R5-06 2 160732029 160732029 C T LY75-CD302 Missense_Mutation p.E634K 0.22 tolerated(0.21) probably_damaging(0.953) TCGA-FW-A3R5-06 2 160755484 160755484 C T LY75-CD302 Missense_Mutation p.E61K 0.12 tolerated(0.42) benign(0) TCGA-FW-A3R5-06 2 160843796 160843796 G A PLA2R1 Silent p.H636H 0.15 TCGA-FW-A3R5-06 2 16086016 16086016 C T MYCN Missense_Mutation p.R398W 0.29 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 160862250 160862250 G A PLA2R1 Nonsense_Mutation p.Q583* 0.07 TCGA-FW-A3R5-06 2 160869799 160869799 G A PLA2R1 Missense_Mutation p.P547S 0.24 tolerated(0.47) possibly_damaging(0.823) TCGA-FW-A3R5-06 2 160873224 160873224 C T PLA2R1 Splice_Site p.X485_splice 0.22 TCGA-FW-A3R5-06 2 160901448 160901448 G A PLA2R1 Silent p.L110L 0.26 TCGA-FW-A3R5-06 2 160994281 160994281 C T ITGB6 Missense_Mutation p.D442N 0.09 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 2 161025734 161025734 G A ITGB6 Missense_Mutation p.H336Y 0.28 tolerated(0.82) benign(0.005) TCGA-FW-A3R5-06 2 162280207 162280207 C T TBR1 Silent p.F506F 0.25 TCGA-FW-A3R5-06 2 162696315 162696315 G A SLC4A10 Silent p.R98R 0.25 TCGA-FW-A3R5-06 2 162762229 162762229 C T SLC4A10 Missense_Mutation p.A610V 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 2 162851822 162851822 C T DPP4 Missense_Mutation p.G705R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 162875326 162875326 G A DPP4 Missense_Mutation p.L445F 0.27 deleterious(0.03) possibly_damaging(0.537) TCGA-FW-A3R5-06 2 163003880 163003880 C T GCG Missense_Mutation p.M79I 0.28 deleterious(0.03) benign(0.061) TCGA-FW-A3R5-06 2 163027502 163027502 G A FAP Missense_Mutation p.S757F 0.09 deleterious(0.02) benign(0.019) TCGA-FW-A3R5-06 2 163031436 163031436 C T FAP Missense_Mutation p.G637E 0.31 deleterious(0) possibly_damaging(0.529) TCGA-FW-A3R5-06 2 163138964 163138964 G A IFIH1 Silent p.S406S 0.31 TCGA-FW-A3R5-06 2 163241215 163241215 C T KCNH7 Missense_Mutation p.R982K 0.08 tolerated(0.56) benign(0.005) TCGA-FW-A3R5-06 2 163241435 163241435 C T KCNH7 Missense_Mutation p.D909N 0.33 tolerated(0.17) benign(0.001) TCGA-FW-A3R5-06 2 163250956 163250956 C T KCNH7 Missense_Mutation p.G885R 0.26 tolerated(0.15) benign(0.14) TCGA-FW-A3R5-06 2 163279938 163279938 G A KCNH7 Missense_Mutation p.R688C 0.12 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 163302789 163302789 G A KCNH7 Silent p.F431F 0.27 TCGA-FW-A3R5-06 2 163393520 163393520 G A KCNH7 Silent p.I126I 0.30 TCGA-FW-A3R5-06 2 163693182 163693182 C T KCNH7 Missense_Mutation p.D58N 0.38 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 2 164467888 164467888 G A FIGN Missense_Mutation p.P152S 0.11 tolerated(0.23) benign(0.262) TCGA-FW-A3R5-06 2 1651957 1651957 C T PXDN Missense_Mutation p.E1199K 0.17 tolerated(0.06) benign(0.42) TCGA-FW-A3R5-06 2 1653404 1653404 G A PXDN Silent p.L716L 0.10 TCGA-FW-A3R5-06 2 165349587 165349587 G A GRB14 Missense_Mutation p.P528S 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 165383593 165383593 C T GRB14 Silent p.G178G 0.25 TCGA-FW-A3R5-06 2 165383628 165383628 G A GRB14 Missense_Mutation p.H167Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 2 165559709 165559709 G A COBLL1 Missense_Mutation p.S416F 0.09 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 2 1658192 1658192 G A PXDN Silent p.T642T 0.11 TCGA-FW-A3R5-06 2 165947774 165947774 C T SCN3A Missense_Mutation p.R1630Q 0.32 deleterious(0.01) probably_damaging(0.928) TCGA-FW-A3R5-06 2 165948992 165948992 C T SCN3A Missense_Mutation p.V1527I 0.29 deleterious(0.05) benign(0.003) TCGA-FW-A3R5-06 2 165956930 165956930 G A SCN3A Missense_Mutation p.S1283F 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 165984197 165984197 C T SCN3A Missense_Mutation p.E1113K 0.32 deleterious(0) possibly_damaging(0.652) TCGA-FW-A3R5-06 2 165984293 165984293 C T SCN3A Missense_Mutation p.E1081K 0.27 tolerated(0.14) possibly_damaging(0.492) TCGA-FW-A3R5-06 2 166012313 166012313 G A SCN3A Nonsense_Mutation p.R378* 0.26 TCGA-FW-A3R5-06 2 166032863 166032863 G A SCN3A Silent p.F14F 0.16 TCGA-FW-A3R5-06 2 166152463 166152463 G A SCN2A Missense_Mutation p.E44K 0.13 tolerated(0.72) benign(0.023) TCGA-FW-A3R5-06 2 166152571 166152571 G A SCN2A Missense_Mutation p.D80N 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 166167070 166167070 G T SCN2A Missense_Mutation p.S312I 0.26 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 2 166167071 166167071 C T SCN2A Silent p.S312S 0.28 TCGA-FW-A3R5-06 2 166170230 166170230 C T SCN2A Missense_Mutation p.R379C 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 166172174 166172174 C T SCN2A Missense_Mutation p.S526L 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 2 166179783 166179783 G A SCN2A Missense_Mutation p.E597K 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 2 166183422 166183422 G A SCN2A Missense_Mutation p.D693N 0.08 deleterious(0.01) possibly_damaging(0.657) TCGA-FW-A3R5-06 2 166221716 166221716 G A SCN2A Missense_Mutation p.E1155K 0.23 tolerated(0.18) possibly_damaging(0.615) TCGA-FW-A3R5-06 2 166229797 166229797 C T SCN2A Silent p.S1304S 0.19 TCGA-FW-A3R5-06 2 166234156 166234156 G A SCN2A Missense_Mutation p.R1435Q 0.25 deleterious(0.04) probably_damaging(0.955) TCGA-FW-A3R5-06 2 166246007 166246007 G A SCN2A Silent p.T1897T 0.35 TCGA-FW-A3R5-06 2 166536025 166536025 C T CSRNP3 Missense_Mutation p.S507F 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.66) TCGA-FW-A3R5-06 2 166611219 166611219 G T GALNT3 Missense_Mutation p.P515H 0.28 tolerated(0.11) benign(0.001) TCGA-FW-A3R5-06 2 166785697 166785697 G A TTC21B Missense_Mutation p.P445L 0.29 deleterious(0.03) possibly_damaging(0.883) TCGA-FW-A3R5-06 2 166806242 166806242 G A TTC21B Intron 0.23 TCGA-FW-A3R5-06 2 166847761 166847761 C T SCN1A Silent p.G2008G 0.37 TCGA-FW-A3R5-06 2 166848510 166848510 G A SCN1A Missense_Mutation p.P1759S 0.27 deleterious(0.02) probably_damaging(0.924) TCGA-FW-A3R5-06 2 166850864 166850864 C T SCN1A Missense_Mutation p.M1548I 0.27 deleterious(0.04) possibly_damaging(0.787) TCGA-FW-A3R5-06 2 166870271 166870271 G A SCN1A Missense_Mutation p.L1230F 0.27 deleterious(0) possibly_damaging(0.903) TCGA-FW-A3R5-06 2 166892569 166892569 C T SCN1A Missense_Mutation p.E1140K 0.22 tolerated(0.4) possibly_damaging(0.893) TCGA-FW-A3R5-06 2 166892662 166892662 G A SCN1A Missense_Mutation p.P1109S 0.33 tolerated(0.07) possibly_damaging(0.792) TCGA-FW-A3R5-06 2 166893029 166893029 G A SCN1A Silent p.L986L 0.27 TCGA-FW-A3R5-06 2 166897921 166897921 G A SCN1A Silent p.F745F 0.22 TCGA-FW-A3R5-06 2 166900351 166900351 T A SCN1A Missense_Mutation p.Q624L 0.20 deleterious(0.03) benign(0.384) TCGA-FW-A3R5-06 2 166900519 166900519 C T SCN1A Missense_Mutation p.R568Q 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 2 166911222 166911222 C T SCN1A Silent p.R176R 0.09 TCGA-FW-A3R5-06 2 166929865 166929865 C T SCN1A Intron 0.23 TCGA-FW-A3R5-06 2 1670063 1670063 C T PXDN Missense_Mutation p.G405E 0.20 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 2 167056312 167056312 G A SCN9A Missense_Mutation p.R1602C 0.26 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 167056366 167056366 G A SCN9A Silent p.L1584L 0.27 TCGA-FW-A3R5-06 2 167060583 167060583 C T SCN9A Silent p.V1541V 0.08 TCGA-FW-A3R5-06 2 167060643 167060643 C T SCN9A Missense_Mutation p.M1521I 0.18 deleterious(0.05) possibly_damaging(0.782) TCGA-FW-A3R5-06 2 167060669 167060669 G A SCN9A Missense_Mutation p.L1513F 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 2 167085308 167085308 G A SCN9A Missense_Mutation p.R1356C 0.21 deleterious(0.01) benign(0.428) TCGA-FW-A3R5-06 2 167129313 167129313 G A SCN9A Missense_Mutation p.P972S 0.26 tolerated(0.16) benign(0.009) TCGA-FW-A3R5-06 2 167141089 167141089 C T SCN9A Silent p.G616G 0.27 TCGA-FW-A3R5-06 2 167142880 167142880 C T SCN9A Missense_Mutation p.R523Q 0.20 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 2 167162335 167162335 C T SCN9A Nonsense_Mutation p.W188* 0.23 TCGA-FW-A3R5-06 2 167279836 167279836 C T SCN7A Nonsense_Mutation p.W987* 0.30 TCGA-FW-A3R5-06 2 167284402 167284402 C T SCN7A Missense_Mutation p.G917R 0.18 deleterious(0.03) benign(0.2) TCGA-FW-A3R5-06 2 167298029 167298029 G A SCN7A Silent p.F678F 0.28 TCGA-FW-A3R5-06 2 167301376 167301376 C T SCN7A Missense_Mutation p.D508N 0.27 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 16740758 16740758 C T FAM49A Silent p.V269V 0.21 TCGA-FW-A3R5-06 2 16740853 16740853 C T FAM49A Missense_Mutation p.E238K 0.25 tolerated(0.17) possibly_damaging(0.551) TCGA-FW-A3R5-06 2 16745363 16745363 C T FAM49A Splice_Site p.X65_splice 0.20 TCGA-FW-A3R5-06 2 16769358 16769358 C T FAM49A Silent p.R10R 0.38 TCGA-FW-A3R5-06 2 16769388 16769388 C T FAM49A 5'UTR 0.17 TCGA-FW-A3R5-06 2 168096465 168096465 G A XIRP2 Missense_Mutation p.G320E 0.37 benign(0.017) TCGA-FW-A3R5-06 2 168099318 168099318 C T XIRP2 Silent p.S472S 0.36 TCGA-FW-A3R5-06 2 168099642 168099642 C T XIRP2 Silent p.I580I 0.23 TCGA-FW-A3R5-06 2 168099726 168099726 C T XIRP2 Silent p.I608I 0.23 TCGA-FW-A3R5-06 2 168100700 168100700 G A XIRP2 Missense_Mutation p.R933Q 0.32 benign(0.099) TCGA-FW-A3R5-06 2 168101389 168101389 C T XIRP2 Missense_Mutation p.R1163C 0.16 probably_damaging(0.979) TCGA-FW-A3R5-06 2 168102212 168102212 G A XIRP2 Missense_Mutation p.R1437Q 0.18 probably_damaging(0.992) TCGA-FW-A3R5-06 2 168102316 168102316 G A XIRP2 Missense_Mutation p.E1472K 0.26 benign(0.06) TCGA-FW-A3R5-06 2 168102445 168102445 G A XIRP2 Missense_Mutation p.E1515K 0.32 probably_damaging(0.999) TCGA-FW-A3R5-06 2 168103420 168103420 G A XIRP2 Missense_Mutation p.D1840N 0.26 possibly_damaging(0.854) TCGA-FW-A3R5-06 2 168103648 168103648 G A XIRP2 Missense_Mutation p.E1916K 0.24 probably_damaging(0.999) TCGA-FW-A3R5-06 2 168104111 168104111 G A XIRP2 Missense_Mutation p.G2070E 0.15 benign(0.004) TCGA-FW-A3R5-06 2 168105525 168105525 G A XIRP2 Silent p.K2541K 0.25 TCGA-FW-A3R5-06 2 168107590 168107590 C T XIRP2 Missense_Mutation p.R3230C 0.28 benign(0.024) TCGA-FW-A3R5-06 2 168108280 168108280 G A XIRP2 Missense_Mutation p.D3460N 0.26 probably_damaging(1) TCGA-FW-A3R5-06 2 1684132 1684132 C T PXDN Missense_Mutation p.R188Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 2 168725844 168725844 G A B3GALT1 Missense_Mutation p.E99K 0.23 tolerated(0.72) benign(0.241) TCGA-FW-A3R5-06 2 168726366 168726366 C T B3GALT1 Nonsense_Mutation p.R273* 0.27 TCGA-FW-A3R5-06 2 169417815 169417815 G A CERS6 Silent p.T130T 0.25 TCGA-FW-A3R5-06 2 169487532 169487532 G A CERS6 Missense_Mutation p.G149R 0.17 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 2 169622102 169622102 G A CERS6 Nonsense_Mutation p.W282* 0.23 TCGA-FW-A3R5-06 2 169690823 169690823 G A NOSTRIN Silent p.K164K 0.19 TCGA-FW-A3R5-06 2 169690824 169690824 G T NOSTRIN Nonsense_Mutation p.E165* 0.19 TCGA-FW-A3R5-06 2 169711903 169711903 G A NOSTRIN Silent p.K356K 0.13 TCGA-FW-A3R5-06 2 169730139 169730139 G A SPC25 Missense_Mutation p.P169L 0.15 deleterious(0.04) benign(0.426) TCGA-FW-A3R5-06 2 169759040 169759040 C T G6PC2 Missense_Mutation p.P102S 0.35 tolerated(0.08) possibly_damaging(0.9) TCGA-FW-A3R5-06 2 169780186 169780186 C T ABCB11 Missense_Mutation p.M1304I 0.27 tolerated(0.13) possibly_damaging(0.613) TCGA-FW-A3R5-06 2 169780299 169780299 C T ABCB11 Missense_Mutation p.G1267S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 169783678 169783678 C G ABCB11 Missense_Mutation p.M1202I 0.09 tolerated(0.08) benign(0.213) TCGA-FW-A3R5-06 2 169787178 169787178 C G ABCB11 Missense_Mutation p.K1136N 0.21 tolerated(0.23) benign(0.219) TCGA-FW-A3R5-06 2 169791926 169791926 C T ABCB11 Missense_Mutation p.E942K 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 169801120 169801120 G A ABCB11 Nonsense_Mutation p.Q869* 0.09 TCGA-FW-A3R5-06 2 169825875 169825875 C T ABCB11 Missense_Mutation p.E666K 0.29 tolerated(0.11) benign(0.002) TCGA-FW-A3R5-06 2 169826714 169826714 G A ABCB11 Silent p.T550T 0.20 TCGA-FW-A3R5-06 2 169842719 169842719 G A ABCB11 Silent p.F328F 0.29 TCGA-FW-A3R5-06 2 169842736 169842736 C T ABCB11 Missense_Mutation p.G323R 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 169939973 169939973 C T DHRS9 Missense_Mutation p.P150S 0.25 tolerated(0.06) probably_damaging(0.943) TCGA-FW-A3R5-06 2 169940013 169940013 C T DHRS9 Missense_Mutation p.S163F 0.25 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 2 169985283 169985283 G A LRP2 Missense_Mutation p.P4620S 0.26 benign(0.002) TCGA-FW-A3R5-06 2 169995191 169995191 C T LRP2 Missense_Mutation p.E4472K 0.15 possibly_damaging(0.507) TCGA-FW-A3R5-06 2 169997050 169997050 C T LRP2 Missense_Mutation p.E4372K 0.28 possibly_damaging(0.591) TCGA-FW-A3R5-06 2 170003441 170003441 C T LRP2 Missense_Mutation p.E4207K 0.25 benign(0.02) TCGA-FW-A3R5-06 2 170011071 170011071 C T LRP2 Missense_Mutation p.R4065Q 0.14 benign(0.187) TCGA-FW-A3R5-06 2 170019096 170019096 G A LRP2 Missense_Mutation p.P3925S 0.25 benign(0.006) TCGA-FW-A3R5-06 2 170030438 170030438 C T LRP2 Missense_Mutation p.E3669K 0.30 benign(0.41) TCGA-FW-A3R5-06 2 170030620 170030620 G A LRP2 Missense_Mutation p.P3608L 0.30 probably_damaging(0.984) TCGA-FW-A3R5-06 2 170037998 170037998 C T LRP2 Missense_Mutation p.D3377N 0.23 possibly_damaging(0.534) TCGA-FW-A3R5-06 2 170044495 170044495 C T LRP2 Missense_Mutation p.D3105N 0.19 probably_damaging(1) TCGA-FW-A3R5-06 2 170062006 170062006 G A LRP2 Silent p.Y2566Y 0.17 TCGA-FW-A3R5-06 2 170062088 170062088 C T LRP2 Missense_Mutation p.G2539E 0.25 probably_damaging(1) TCGA-FW-A3R5-06 2 170063345 170063345 C T LRP2 Silent p.R2295R 0.33 TCGA-FW-A3R5-06 2 170066148 170066148 C T LRP2 Missense_Mutation p.R2095Q 0.21 benign(0.109) TCGA-FW-A3R5-06 2 170076982 170076982 G C LRP2 Missense_Mutation p.T1877S 0.32 benign(0.023) TCGA-FW-A3R5-06 2 170092404 170092404 C T LRP2 Missense_Mutation p.M1622I 0.31 benign(0) TCGA-FW-A3R5-06 2 170096247 170096247 G A LRP2 Missense_Mutation p.H1362Y 0.26 probably_damaging(0.968) TCGA-FW-A3R5-06 2 170103479 170103479 G A LRP2 Nonsense_Mutation p.Q976* 0.17 TCGA-FW-A3R5-06 2 170115597 170115597 C T LRP2 Silent p.T817T 0.31 TCGA-FW-A3R5-06 2 170139474 170139474 C T LRP2 Silent p.Q360Q 0.31 TCGA-FW-A3R5-06 2 170148796 170148796 C T LRP2 Missense_Mutation p.D246N 0.23 probably_damaging(0.94) TCGA-FW-A3R5-06 2 170177374 170177374 G A LRP2 Missense_Mutation p.R34C 0.38 probably_damaging(0.982) TCGA-FW-A3R5-06 2 170863617 170863617 C T UBR3 Missense_Mutation p.P1383S 0.21 tolerated(0.53) benign(0) TCGA-FW-A3R5-06 2 170897468 170897468 T C UBR3 Silent p.L1545L 0.09 TCGA-FW-A3R5-06 2 171055856 171055856 G A MYO3B Silent p.K47K 0.15 TCGA-FW-A3R5-06 2 171071264 171071264 G A MYO3B Missense_Mutation p.R151Q 0.27 tolerated(0.16) benign(0.015) TCGA-FW-A3R5-06 2 171092543 171092543 C T MYO3B Missense_Mutation p.R216C 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 171258191 171258191 G A MYO3B Missense_Mutation p.E707K 0.27 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 2 171264339 171264339 C T MYO3B Missense_Mutation p.P879S 0.26 deleterious(0) possibly_damaging(0.475) TCGA-FW-A3R5-06 2 171323129 171323129 G A MYO3B Silent p.L974L 0.22 TCGA-FW-A3R5-06 2 171686121 171686121 C T GAD1 Silent p.D94D 0.23 TCGA-FW-A3R5-06 2 171699195 171699195 C T GAD1 Intron 0.29 TCGA-FW-A3R5-06 2 171699222 171699222 G A GAD1 Intron 0.33 TCGA-FW-A3R5-06 2 171700565 171700565 G A GAD1 Missense_Mutation p.E217K 0.24 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 2 171871371 171871371 C T TLK1 Missense_Mutation p.D442N 0.23 deleterious(0.01) possibly_damaging(0.758) TCGA-FW-A3R5-06 2 172195966 172195966 G A METTL8 Missense_Mutation p.P112S 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 172409859 172409859 C T CYBRD1 Missense_Mutation p.L136F 0.23 tolerated(0.67) benign(0.02) TCGA-FW-A3R5-06 2 172582164 172582164 C T DYNC1I2 Missense_Mutation p.P183L 0.29 tolerated(0.36) benign(0.001) TCGA-FW-A3R5-06 2 172585245 172585245 C T DYNC1I2 Missense_Mutation p.H426Y 0.24 tolerated(0.99) benign(0.001) TCGA-FW-A3R5-06 2 172644360 172644360 G A SLC25A12 Silent p.I561I 0.29 TCGA-FW-A3R5-06 2 172803273 172803273 C T HAT1 Missense_Mutation p.P53L 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 173351826 173351826 A T ITGA6 Missense_Mutation p.T644S 0.19 tolerated(0.69) benign(0.053) TCGA-FW-A3R5-06 2 173352339 173352339 C T ITGA6 Missense_Mutation p.P742L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 173679074 173679074 C T RAPGEF4 Missense_Mutation p.P122L 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 2 173787010 173787010 G A RAPGEF4 Silent p.R173R 0.28 TCGA-FW-A3R5-06 2 173883494 173883494 G A RAPGEF4 Missense_Mutation p.E707K 0.16 tolerated(0.37) benign(0.114) TCGA-FW-A3R5-06 2 173916423 173916423 G A RAPGEF4 Silent p.R988R 0.29 TCGA-FW-A3R5-06 2 174224139 174224139 G A CDCA7 Missense_Mutation p.E102K 0.28 tolerated(0.11) benign(0.023) TCGA-FW-A3R5-06 2 174783444 174783444 G A SP3 Missense_Mutation p.T570I 0.28 tolerated(0.15) possibly_damaging(0.477) TCGA-FW-A3R5-06 2 175213483 175213483 G A CIR1 Silent p.S365S 0.26 TCGA-FW-A3R5-06 2 175304647 175304647 C T GPR155 Missense_Mutation p.R764Q 0.24 tolerated(0.87) benign(0.001) TCGA-FW-A3R5-06 2 175939542 175939542 G A ATF2 Missense_Mutation p.S438L 0.23 tolerated(0.67) benign(0.335) TCGA-FW-A3R5-06 2 17692204 17692204 C T RAD51AP2 Missense_Mutation p.G1116D 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 17692205 17692205 C T RAD51AP2 Missense_Mutation p.G1116S 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 176946947 176946947 C T EVX2 Missense_Mutation p.E220K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 176946975 176946975 C T EVX2 Silent p.E210E 0.29 TCGA-FW-A3R5-06 2 176947013 176947013 C T EVX2 Missense_Mutation p.E198K 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 2 176948363 176948363 G A EVX2 Missense_Mutation p.R48C 0.16 tolerated(0.14) benign(0.051) TCGA-FW-A3R5-06 2 176982006 176982006 C T HOXD10 Missense_Mutation p.P149S 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 2 176982108 176982108 C T HOXD10 Missense_Mutation p.R183C 0.23 deleterious(0.01) possibly_damaging(0.739) TCGA-FW-A3R5-06 2 17698394 17698394 C T RAD51AP2 Nonsense_Mutation p.W430* 0.29 TCGA-FW-A3R5-06 2 176987442 176987442 G A HOXD9 5'UTR 0.22 TCGA-FW-A3R5-06 2 176988257 176988257 C T HOXD9 Missense_Mutation p.S254L 0.48 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 2 17698997 17698997 G A RAD51AP2 Missense_Mutation p.S229L 0.18 deleterious(0.02) benign(0.083) TCGA-FW-A3R5-06 2 17699326 17699326 G A RAD51AP2 Silent p.P119P 0.17 TCGA-FW-A3R5-06 2 177034349 177034349 G A HOXD3 Silent p.Q169Q 0.31 TCGA-FW-A3R5-06 2 177036456 177036456 G A HOXD3 Silent p.K251K 0.28 TCGA-FW-A3R5-06 2 178481937 178481937 G A TTC30A Missense_Mutation p.A498V 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 178482356 178482356 G A TTC30A Silent p.L358L 0.25 TCGA-FW-A3R5-06 2 178562106 178562106 G A PDE11A Missense_Mutation p.L767F 0.13 deleterious(0.03) benign(0.09) TCGA-FW-A3R5-06 2 178565851 178565851 C T PDE11A Missense_Mutation p.E748K 0.19 tolerated(0.06) benign(0.123) TCGA-FW-A3R5-06 2 178769882 178769882 G A PDE11A Silent p.I368I 0.21 TCGA-FW-A3R5-06 2 178879114 178879114 C T PDE11A Missense_Mutation p.R329Q 0.20 tolerated(0.41) benign(0.151) TCGA-FW-A3R5-06 2 178936259 178936259 G A PDE11A Silent p.A302A 0.07 TCGA-FW-A3R5-06 2 179214050 179214050 G A OSBPL6 Missense_Mutation p.D388N 0.29 tolerated(0.24) benign(0.026) TCGA-FW-A3R5-06 2 179255882 179255882 G A OSBPL6 Missense_Mutation p.G820E 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 17927185 17927185 G A SMC6 Missense_Mutation p.S10F 0.18 tolerated(0.71) benign(0.001) TCGA-FW-A3R5-06 2 179326102 179326102 G A DFNB59 3'UTR 0.19 TCGA-FW-A3R5-06 2 179393620 179393620 C T TTN Missense_Mutation p.E35620K 0.33 TCGA-FW-A3R5-06 2 179395723 179395723 C T TTN Missense_Mutation p.E35207K 0.31 TCGA-FW-A3R5-06 2 179399221 179399221 C T TTN Missense_Mutation p.E34041K 0.31 TCGA-FW-A3R5-06 2 179407830 179407830 C T TTN Silent p.E32290E 0.31 TCGA-FW-A3R5-06 2 179408964 179408964 C T TTN Missense_Mutation p.E31998K 0.28 TCGA-FW-A3R5-06 2 179408973 179408973 C T TTN Missense_Mutation p.E31995K 0.34 TCGA-FW-A3R5-06 2 179413153 179413153 C T TTN Missense_Mutation p.S31067N 0.21 TCGA-FW-A3R5-06 2 179414035 179414035 C T TTN Missense_Mutation p.R30773Q 0.26 TCGA-FW-A3R5-06 2 179414324 179414324 C T TTN Missense_Mutation p.D30709N 0.20 TCGA-FW-A3R5-06 2 179417421 179417421 C T TTN Missense_Mutation p.R30069K 0.21 TCGA-FW-A3R5-06 2 179418650 179418650 C T TTN Missense_Mutation p.D29730N 0.23 TCGA-FW-A3R5-06 2 179428916 179428916 C T TTN Missense_Mutation p.E27315K 0.25 TCGA-FW-A3R5-06 2 179429682 179429682 C T TTN Silent p.L27059L 0.24 TCGA-FW-A3R5-06 2 179430142 179430142 C T TTN Missense_Mutation p.R26906Q 0.24 TCGA-FW-A3R5-06 2 179431928 179431928 G A TTN Missense_Mutation p.P26311S 0.23 TCGA-FW-A3R5-06 2 179432393 179432393 C T TTN Missense_Mutation p.D26156N 0.26 TCGA-FW-A3R5-06 2 179436900 179436900 C T TTN Silent p.V24653V 0.38 TCGA-FW-A3R5-06 2 179438476 179438476 C T TTN Missense_Mutation p.G24128E 0.23 TCGA-FW-A3R5-06 2 179438751 179438751 C T TTN Silent p.K24036K 0.39 TCGA-FW-A3R5-06 2 179438833 179438833 C T TTN Missense_Mutation p.S24009N 0.31 TCGA-FW-A3R5-06 2 179441006 179441006 C T TTN Missense_Mutation p.E23285K 0.35 TCGA-FW-A3R5-06 2 179441363 179441363 C T TTN Missense_Mutation p.G23203E 0.28 TCGA-FW-A3R5-06 2 179443794 179443794 C T TTN Missense_Mutation p.E22655K 0.38 TCGA-FW-A3R5-06 2 179447116 179447116 C T TTN Missense_Mutation p.G22023S 0.29 TCGA-FW-A3R5-06 2 179449180 179449180 C T TTN Missense_Mutation p.E21700K 0.30 TCGA-FW-A3R5-06 2 179449278 179449278 C T TTN Missense_Mutation p.R21667Q 0.36 TCGA-FW-A3R5-06 2 179452434 179452434 C T TTN Missense_Mutation p.R21201Q 0.31 TCGA-FW-A3R5-06 2 179452474 179452474 C T TTN Missense_Mutation p.A21188T 0.23 TCGA-FW-A3R5-06 2 179453325 179453325 C T TTN Missense_Mutation p.E21043K 0.30 TCGA-FW-A3R5-06 2 179456479 179456479 C T TTN Missense_Mutation p.D20023N 0.27 TCGA-FW-A3R5-06 2 179456933 179456933 C T TTN Missense_Mutation p.E19900K 0.35 TCGA-FW-A3R5-06 2 179457165 179457165 G A TTN Missense_Mutation p.S19856F 0.18 TCGA-FW-A3R5-06 2 179466465 179466465 C T TTN Missense_Mutation p.R18451Q 0.21 TCGA-FW-A3R5-06 2 179469545 179469545 C T TTN Missense_Mutation p.D18091N 0.32 TCGA-FW-A3R5-06 2 179474049 179474049 C T TTN Missense_Mutation p.G17330R 0.16 TCGA-FW-A3R5-06 2 179474571 179474571 C T TTN Silent p.R17193R 0.27 TCGA-FW-A3R5-06 2 179475048 179475048 C T TTN Missense_Mutation p.E17069K 0.31 TCGA-FW-A3R5-06 2 179476172 179476172 C T TTN Silent p.V16928V 0.17 TCGA-FW-A3R5-06 2 179476841 179476841 C T TTN Missense_Mutation p.R16766Q 0.19 TCGA-FW-A3R5-06 2 179486330 179486330 C T TTN Missense_Mutation p.G15074E 0.31 TCGA-FW-A3R5-06 2 179486595 179486595 C T TTN Silent p.A15018A 0.34 TCGA-FW-A3R5-06 2 179489358 179489358 C T TTN Silent p.V14883V 0.28 TCGA-FW-A3R5-06 2 179497087 179497087 C T TTN Missense_Mutation p.E14512K 0.43 TCGA-FW-A3R5-06 2 179497405 179497405 C T TTN Missense_Mutation p.G14443E 0.27 TCGA-FW-A3R5-06 2 179497989 179497989 G A TTN Silent p.H14337H 0.37 TCGA-FW-A3R5-06 2 179498050 179498050 C T TTN Missense_Mutation p.R14317Q 0.08 TCGA-FW-A3R5-06 2 179498290 179498290 C T TTN Missense_Mutation p.G14266S 0.29 TCGA-FW-A3R5-06 2 179499268 179499268 C T TTN Silent p.E14080E 0.27 TCGA-FW-A3R5-06 2 179501469 179501469 C T TTN Missense_Mutation p.G13662E 0.29 TCGA-FW-A3R5-06 2 179501491 179501491 C T TTN Missense_Mutation p.E13655K 0.22 TCGA-FW-A3R5-06 2 179505290 179505290 C T TTN Silent p.R13567R 0.17 TCGA-FW-A3R5-06 2 179516823 179516823 C T TTN Missense_Mutation p.V13099M 0.27 TCGA-FW-A3R5-06 2 179528772 179528772 G A TTN Missense_Mutation p.P12112S 0.30 TCGA-FW-A3R5-06 2 179529435 179529435 C T TTN Missense_Mutation p.E12050K 0.18 TCGA-FW-A3R5-06 2 179529611 179529611 G A TTN Missense_Mutation p.P12029L 0.18 TCGA-FW-A3R5-06 2 179535006 179535006 C T TTN Silent p.K11775K 0.29 TCGA-FW-A3R5-06 2 179535872 179535872 G A TTN Silent p.I11751I 0.26 TCGA-FW-A3R5-06 2 179539769 179539769 C T TTN Missense_Mutation p.E11537K 0.33 TCGA-FW-A3R5-06 2 179542591 179542591 C T TTN Missense_Mutation p.E11350K 0.35 TCGA-FW-A3R5-06 2 179552902 179552902 G A TTN Silent p.S10749S 0.28 TCGA-FW-A3R5-06 2 179553422 179553422 C T TTN Missense_Mutation p.E10727K 0.40 TCGA-FW-A3R5-06 2 179554594 179554594 C T TTN Missense_Mutation p.E10598K 0.26 TCGA-FW-A3R5-06 2 179567368 179567368 C T TTN Silent p.K10082K 0.24 TCGA-FW-A3R5-06 2 179569269 179569269 G A TTN Missense_Mutation p.P9977L 0.25 TCGA-FW-A3R5-06 2 179569441 179569441 C T TTN Missense_Mutation p.E9920K 0.36 TCGA-FW-A3R5-06 2 179569663 179569663 C T TTN Missense_Mutation p.D9879N 0.23 TCGA-FW-A3R5-06 2 179569978 179569978 C T TTN Missense_Mutation p.G9843R 0.24 TCGA-FW-A3R5-06 2 179571363 179571363 G A TTN Silent p.F9746F 0.16 TCGA-FW-A3R5-06 2 179571376 179571376 C T TTN Missense_Mutation p.G9742E 0.33 TCGA-FW-A3R5-06 2 179575439 179575439 C T TTN Missense_Mutation p.G9462E 0.43 TCGA-FW-A3R5-06 2 179575520 179575520 C T TTN Missense_Mutation p.R9435K 0.21 TCGA-FW-A3R5-06 2 179575593 179575593 C T TTN Missense_Mutation p.G9411R 0.19 TCGA-FW-A3R5-06 2 179575645 179575645 C T TTN Silent p.G9393G 0.28 TCGA-FW-A3R5-06 2 179576907 179576907 G A TTN Missense_Mutation p.S9217F 0.31 TCGA-FW-A3R5-06 2 179577424 179577424 C T TTN Missense_Mutation p.A9110T 0.28 TCGA-FW-A3R5-06 2 179579281 179579281 C T TTN Silent p.K8740K 0.30 TCGA-FW-A3R5-06 2 179579835 179579835 G A TTN Missense_Mutation p.S8693F 0.28 TCGA-FW-A3R5-06 2 179582436 179582436 G A TTN Missense_Mutation p.L8389F 0.12 TCGA-FW-A3R5-06 2 179582503 179582503 C T TTN Silent p.L8366L 0.21 TCGA-FW-A3R5-06 2 179583227 179583227 C T TTN Silent p.V8202V 0.12 TCGA-FW-A3R5-06 2 179584010 179584010 G A TTN Missense_Mutation p.S8036L 0.17 TCGA-FW-A3R5-06 2 179584053 179584053 C T TTN Missense_Mutation p.G8022R 0.33 TCGA-FW-A3R5-06 2 179584156 179584156 G A TTN Silent p.F7987F 0.22 TCGA-FW-A3R5-06 2 179584835 179584835 G A TTN Missense_Mutation p.S7845L 0.10 TCGA-FW-A3R5-06 2 179585180 179585180 C T TTN Missense_Mutation p.G7770E 0.25 TCGA-FW-A3R5-06 2 179585738 179585738 C T TTN Missense_Mutation p.E7670K 0.29 TCGA-FW-A3R5-06 2 179585815 179585815 C T TTN Missense_Mutation p.R7644Q 0.20 TCGA-FW-A3R5-06 2 179585896 179585896 G A TTN Missense_Mutation p.S7617L 0.30 TCGA-FW-A3R5-06 2 179587530 179587530 T C TTN Missense_Mutation p.T7366A 0.25 TCGA-FW-A3R5-06 2 179588821 179588821 C T TTN Silent p.G7055G 0.18 TCGA-FW-A3R5-06 2 179590249 179590249 C T TTN Silent p.V6894V 0.28 TCGA-FW-A3R5-06 2 179590257 179590257 C T TTN Missense_Mutation p.E6892K 0.22 TCGA-FW-A3R5-06 2 179591878 179591878 G A TTN Silent p.F6738F 0.21 TCGA-FW-A3R5-06 2 179592510 179592510 C T TTN Missense_Mutation p.G6599R 0.28 TCGA-FW-A3R5-06 2 179593660 179593660 C T TTN Missense_Mutation p.E6369K 0.38 TCGA-FW-A3R5-06 2 179593736 179593736 C T TTN Silent p.V6343V 0.17 TCGA-FW-A3R5-06 2 179593759 179593759 C T TTN Missense_Mutation p.D6336N 0.24 TCGA-FW-A3R5-06 2 179594181 179594181 C T TTN Silent p.K6234K 0.37 TCGA-FW-A3R5-06 2 179594212 179594212 C T TTN Missense_Mutation p.G6224E 0.20 TCGA-FW-A3R5-06 2 179594268 179594268 C T TTN Silent p.L6205L 0.13 TCGA-FW-A3R5-06 2 179594547 179594547 C T TTN Missense_Mutation p.E6145K 0.40 TCGA-FW-A3R5-06 2 179594659 179594659 G A TTN Silent p.F6107F 0.26 TCGA-FW-A3R5-06 2 179594905 179594905 G A TTN Silent p.A6074A 0.10 TCGA-FW-A3R5-06 2 179594940 179594940 C T TTN Missense_Mutation p.D6063N 0.40 TCGA-FW-A3R5-06 2 179595094 179595094 G A TTN Silent p.P6011P 0.23 TCGA-FW-A3R5-06 2 179595095 179595095 G A TTN Missense_Mutation p.P6011L 0.23 TCGA-FW-A3R5-06 2 179595335 179595335 G A TTN Silent p.F5975F 0.18 TCGA-FW-A3R5-06 2 179596633 179596633 G A TTN Silent p.L5657L 0.20 TCGA-FW-A3R5-06 2 179596678 179596678 C T TTN Missense_Mutation p.E5642K 0.13 TCGA-FW-A3R5-06 2 179596949 179596949 C T TTN Missense_Mutation p.E5583K 0.24 TCGA-FW-A3R5-06 2 179599149 179599149 G A TTN Silent p.I5134I 0.25 TCGA-FW-A3R5-06 2 179599285 179599285 C T TTN Missense_Mutation p.G5089E 0.18 TCGA-FW-A3R5-06 2 179599310 179599310 G A TTN Missense_Mutation p.L5081F 0.16 TCGA-FW-A3R5-06 2 179599464 179599464 C T TTN Missense_Mutation p.D5063N 0.21 TCGA-FW-A3R5-06 2 179600700 179600700 C T TTN Missense_Mutation p.E4825K 0.32 TCGA-FW-A3R5-06 2 179603955 179603955 C T TTN Missense_Mutation p.E4669K 0.25 TCGA-FW-A3R5-06 2 179604061 179604061 T A TTN Missense_Mutation p.K4633N 0.29 TCGA-FW-A3R5-06 2 179604076 179604076 G A TTN Silent p.S4628S 0.11 TCGA-FW-A3R5-06 2 179604077 179604077 G A TTN Missense_Mutation p.S4628F 0.11 TCGA-FW-A3R5-06 2 179604199 179604199 C T TTN Silent p.E4587E 0.19 TCGA-FW-A3R5-06 2 179604474 179604474 G A TTN Nonsense_Mutation p.Q4496* 0.31 TCGA-FW-A3R5-06 2 179604650 179604650 C T TTN Missense_Mutation p.R4437K 0.22 TCGA-FW-A3R5-06 2 179604980 179604980 G A TTN Missense_Mutation p.S4327F 0.29 TCGA-FW-A3R5-06 2 179605338 179605338 C T TTN Missense_Mutation p.E4208K 0.28 TCGA-FW-A3R5-06 2 179605677 179605677 C T TTN Missense_Mutation p.E4095K 0.31 TCGA-FW-A3R5-06 2 179611058 179611058 G A TTN Intron 0.37 TCGA-FW-A3R5-06 2 179611474 179611474 C T TTN Intron 0.30 TCGA-FW-A3R5-06 2 179611552 179611552 C T TTN Intron 0.34 TCGA-FW-A3R5-06 2 179611619 179611619 G A TTN Intron 0.32 TCGA-FW-A3R5-06 2 179612645 179612645 G A TTN Intron 0.30 TCGA-FW-A3R5-06 2 179613628 179613628 C T TTN Intron 0.40 TCGA-FW-A3R5-06 2 179613737 179613737 C T TTN Intron 0.23 TCGA-FW-A3R5-06 2 179613867 179613867 T A TTN Intron 0.25 TCGA-FW-A3R5-06 2 179614236 179614236 C T TTN Intron 0.33 TCGA-FW-A3R5-06 2 179614317 179614317 G A TTN Intron 0.33 TCGA-FW-A3R5-06 2 179615326 179615326 G A TTN Intron 0.32 TCGA-FW-A3R5-06 2 179615651 179615651 C T TTN Intron 0.27 TCGA-FW-A3R5-06 2 179615810 179615810 G A TTN Intron 0.06 TCGA-FW-A3R5-06 2 179616242 179616242 C T TTN Intron 0.35 TCGA-FW-A3R5-06 2 179621171 179621171 G A TTN Nonsense_Mutation p.Q3678* 0.26 TCGA-FW-A3R5-06 2 179621303 179621303 G A TTN Missense_Mutation p.H3634Y 0.12 TCGA-FW-A3R5-06 2 179621389 179621389 G A TTN Missense_Mutation p.S3605L 0.27 TCGA-FW-A3R5-06 2 179622401 179622401 C T TTN Missense_Mutation p.E3516K 0.26 TCGA-FW-A3R5-06 2 179629027 179629027 G A TTN Missense_Mutation p.P3331S 0.29 TCGA-FW-A3R5-06 2 179631337 179631337 G A TTN Silent p.V3158V 0.21 TCGA-FW-A3R5-06 2 179632515 179632515 G A TTN Missense_Mutation p.R3148C 0.22 TCGA-FW-A3R5-06 2 179633472 179633472 G A TTN Missense_Mutation p.H3031Y 0.23 TCGA-FW-A3R5-06 2 179633587 179633587 C T TTN Silent p.V2992V 0.19 TCGA-FW-A3R5-06 2 179635143 179635143 C T TTN Silent p.V2792V 0.22 TCGA-FW-A3R5-06 2 179638073 179638073 G A TTN Missense_Mutation p.R2540C 0.23 TCGA-FW-A3R5-06 2 179638652 179638652 C T TTN Missense_Mutation p.E2415K 0.22 TCGA-FW-A3R5-06 2 179639748 179639748 G A TTN Silent p.F2230F 0.23 TCGA-FW-A3R5-06 2 179640122 179640122 C T TTN Missense_Mutation p.A2157T 0.19 TCGA-FW-A3R5-06 2 179640263 179640263 C T TTN Missense_Mutation p.E2110K 0.08 TCGA-FW-A3R5-06 2 179640348 179640348 G A TTN Silent p.F2081F 0.28 TCGA-FW-A3R5-06 2 179641355 179641355 C T TTN Missense_Mutation p.E1746K 0.23 TCGA-FW-A3R5-06 2 179642167 179642167 G A TTN Missense_Mutation p.S1542L 0.19 TCGA-FW-A3R5-06 2 179643770 179643770 C T TTN Missense_Mutation p.A1347T 0.20 TCGA-FW-A3R5-06 2 179643967 179643967 G A TTN Missense_Mutation p.P1318S 0.32 TCGA-FW-A3R5-06 2 179644044 179644044 C T TTN Missense_Mutation p.G1292E 0.17 TCGA-FW-A3R5-06 2 179644778 179644778 C T TTN Silent p.R1226R 0.35 TCGA-FW-A3R5-06 2 179648883 179648883 C T TTN Missense_Mutation p.E897K 0.28 TCGA-FW-A3R5-06 2 179648970 179648970 C T TTN Missense_Mutation p.E868K 0.33 TCGA-FW-A3R5-06 2 179650431 179650431 G A TTN Silent p.V803V 0.25 TCGA-FW-A3R5-06 2 179650730 179650730 C T TTN Missense_Mutation p.E739K 0.30 TCGA-FW-A3R5-06 2 179654826 179654826 C T TTN Missense_Mutation p.R606K 0.27 TCGA-FW-A3R5-06 2 179659733 179659733 G A TTN Silent p.T387T 0.25 TCGA-FW-A3R5-06 2 179664562 179664562 C T TTN Missense_Mutation p.R220Q 0.32 TCGA-FW-A3R5-06 2 179665278 179665278 C T TTN Missense_Mutation p.E143K 0.28 TCGA-FW-A3R5-06 2 179666962 179666962 C T TTN Silent p.T66T 0.27 TCGA-FW-A3R5-06 2 179666989 179666989 G A TTN Silent p.S57S 0.26 TCGA-FW-A3R5-06 2 179718276 179718276 C T CCDC141 Missense_Mutation p.E1046K 0.29 deleterious(0.02) possibly_damaging(0.519) TCGA-FW-A3R5-06 2 179720208 179720208 G A CCDC141 Missense_Mutation p.P976S 0.29 tolerated(0.06) possibly_damaging(0.897) TCGA-FW-A3R5-06 2 179720250 179720250 C T CCDC141 Missense_Mutation p.E962K 0.23 tolerated(0.11) possibly_damaging(0.678) TCGA-FW-A3R5-06 2 179732796 179732796 G A CCDC141 Missense_Mutation p.A844V 0.17 tolerated(0.24) benign(0.105) TCGA-FW-A3R5-06 2 179732833 179732833 C T CCDC141 Missense_Mutation p.E832K 0.28 deleterious(0.04) benign(0.202) TCGA-FW-A3R5-06 2 179733990 179733990 C T CCDC141 Missense_Mutation p.E750K 0.14 tolerated(0.52) benign(0.008) TCGA-FW-A3R5-06 2 179736188 179736188 C T CCDC141 Missense_Mutation p.R724Q 0.32 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 2 179737040 179737040 C T CCDC141 Splice_Site p.X634_splice 0.26 TCGA-FW-A3R5-06 2 17997965 17997965 C T MSGN1 Silent p.P60P 0.09 TCGA-FW-A3R5-06 2 180383269 180383269 G A ZNF385B Missense_Mutation p.R165C 0.28 deleterious(0) possibly_damaging(0.875) TCGA-FW-A3R5-06 2 180634297 180634297 C T ZNF385B Silent p.V62V 0.31 TCGA-FW-A3R5-06 2 180634324 180634324 G A ZNF385B Silent p.S53S 0.23 TCGA-FW-A3R5-06 2 180846610 180846610 G A CWC22 Silent p.S107S 0.31 TCGA-FW-A3R5-06 2 180846611 180846611 G A CWC22 Missense_Mutation p.S107F 0.31 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 2 18112930 18112930 G A KCNS3 Missense_Mutation p.D219N 0.19 tolerated(0.43) benign(0.009) TCGA-FW-A3R5-06 2 18113038 18113038 C T KCNS3 Silent p.L255L 0.18 TCGA-FW-A3R5-06 2 18113370 18113370 C T KCNS3 Silent p.T365T 0.30 TCGA-FW-A3R5-06 2 18113665 18113665 G A KCNS3 Missense_Mutation p.D464N 0.32 tolerated(0.72) benign(0.001) TCGA-FW-A3R5-06 2 18113786 18113786 C T KCNS3 3'UTR 0.21 TCGA-FW-A3R5-06 2 182347137 182347137 G A ITGA4 Missense_Mutation p.M297I 0.25 tolerated(0.54) benign(0.017) TCGA-FW-A3R5-06 2 182358140 182358140 C T ITGA4 Silent p.F414F 0.28 TCGA-FW-A3R5-06 2 182359477 182359477 C T ITGA4 Missense_Mutation p.S426L 0.31 tolerated(0.16) possibly_damaging(0.449) TCGA-FW-A3R5-06 2 182363398 182363398 C T ITGA4 Missense_Mutation p.P530L 0.21 deleterious(0.01) possibly_damaging(0.851) TCGA-FW-A3R5-06 2 182392093 182392093 G A ITGA4 Silent p.E803E 0.26 TCGA-FW-A3R5-06 2 182392099 182392099 G A ITGA4 Missense_Mutation p.M805I 0.23 tolerated(0.91) benign(0.001) TCGA-FW-A3R5-06 2 182412572 182412572 C T CERKL Missense_Mutation p.R405K 0.32 tolerated(0.94) benign(0.001) TCGA-FW-A3R5-06 2 182413531 182413531 G A CERKL Missense_Mutation p.R343C 0.32 deleterious(0.04) benign(0.117) TCGA-FW-A3R5-06 2 182542350 182542350 C T NEUROD1 3'UTR 0.20 TCGA-FW-A3R5-06 2 182543331 182543331 G A NEUROD1 Missense_Mutation p.P86L 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-FW-A3R5-06 2 182780880 182780880 C T SSFA2 Missense_Mutation p.P838L 0.26 tolerated(0.19) benign(0.012) TCGA-FW-A3R5-06 2 182781010 182781010 C T SSFA2 Silent p.F881F 0.09 TCGA-FW-A3R5-06 2 182850727 182850727 G A PPP1R1C 5'UTR 0.29 TCGA-FW-A3R5-06 2 182850809 182850809 C T PPP1R1C 5'UTR 0.26 TCGA-FW-A3R5-06 2 183032889 183032889 G A PDE1A Intron 0.25 TCGA-FW-A3R5-06 2 183053786 183053786 C T PDE1A Missense_Mutation p.G392E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 183104878 183104878 C T PDE1A Silent p.R119R 0.22 TCGA-FW-A3R5-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.20 deleterious(0) probably_damaging(0.961) TCGA-FW-A3R5-06 2 183104896 183104896 C T PDE1A Silent p.E113E 0.20 TCGA-FW-A3R5-06 2 183104955 183104955 G T PDE1A Silent p.R94R 0.32 TCGA-FW-A3R5-06 2 183586769 183586769 C T DNAJC10 Missense_Mutation p.P129S 0.31 tolerated(0.14) possibly_damaging(0.554) TCGA-FW-A3R5-06 2 183605973 183605973 C T DNAJC10 Missense_Mutation p.R361C 0.11 deleterious(0.02) possibly_damaging(0.772) TCGA-FW-A3R5-06 2 183731065 183731065 G A FRZB Silent p.F72F 0.36 TCGA-FW-A3R5-06 2 185798354 185798354 G A ZNF804A Missense_Mutation p.E94K 0.27 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 2 185800866 185800866 G A ZNF804A Missense_Mutation p.R248K 0.23 deleterious(0.02) probably_damaging(0.931) TCGA-FW-A3R5-06 2 185800940 185800940 G A ZNF804A Missense_Mutation p.E273K 0.18 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 2 185800953 185800953 C T ZNF804A Missense_Mutation p.S277F 0.17 tolerated(0.72) probably_damaging(0.986) TCGA-FW-A3R5-06 2 185801106 185801106 C T ZNF804A Missense_Mutation p.S328L 0.26 tolerated(0.11) benign(0.14) TCGA-FW-A3R5-06 2 185801491 185801491 C T ZNF804A Silent p.S456S 0.27 TCGA-FW-A3R5-06 2 185801863 185801863 A C ZNF804A Silent p.I580I 0.26 TCGA-FW-A3R5-06 2 185802134 185802134 G A ZNF804A Missense_Mutation p.E671K 0.21 tolerated(0.32) benign(0.355) TCGA-FW-A3R5-06 2 185802259 185802259 G A ZNF804A Silent p.G712G 0.29 TCGA-FW-A3R5-06 2 185802809 185802809 G A ZNF804A Missense_Mutation p.E896K 0.22 tolerated(0.2) benign(0.001) TCGA-FW-A3R5-06 2 185802863 185802863 C T ZNF804A Missense_Mutation p.P914S 0.22 tolerated(0.79) benign(0.057) TCGA-FW-A3R5-06 2 185803521 185803521 C T ZNF804A Missense_Mutation p.S1133F 0.33 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 2 185803596 185803596 G A ZNF804A Missense_Mutation p.G1158E 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 185803597 185803597 G A ZNF804A Silent p.G1158G 0.30 TCGA-FW-A3R5-06 2 185803769 185803769 G A ZNF804A 3'UTR 0.27 TCGA-FW-A3R5-06 2 186669961 186669961 G A FSIP2 Missense_Mutation p.G5399S 0.31 benign(0.052) TCGA-FW-A3R5-06 2 186670720 186670720 G A FSIP2 Missense_Mutation p.E5652K 0.30 benign(0.028) TCGA-FW-A3R5-06 2 186671899 186671899 G A FSIP2 Missense_Mutation p.E6045K 0.27 probably_damaging(0.998) TCGA-FW-A3R5-06 2 186672268 186672268 G A FSIP2 Missense_Mutation p.E6168K 0.50 probably_damaging(0.999) TCGA-FW-A3R5-06 2 186672571 186672571 G A FSIP2 Missense_Mutation p.E6269K 0.25 probably_damaging(0.999) TCGA-FW-A3R5-06 2 186673345 186673345 G A FSIP2 Missense_Mutation p.E6527K 0.14 possibly_damaging(0.449) TCGA-FW-A3R5-06 2 186673597 186673597 G A FSIP2 Missense_Mutation p.V6611I 0.14 benign(0.029) TCGA-FW-A3R5-06 2 187370268 187370268 C T ZC3H15 Missense_Mutation p.L270F 0.14 tolerated(0.7) benign(0.006) TCGA-FW-A3R5-06 2 18745386 18745386 C T NT5C1B Splice_Site p.X504_splice 0.25 TCGA-FW-A3R5-06 2 187627274 187627274 C T FAM171B Silent p.I735I 0.24 TCGA-FW-A3R5-06 2 18765360 18765360 G A NT5C1B Silent p.F355F 0.20 TCGA-FW-A3R5-06 2 18765443 18765443 C T NT5C1B Missense_Mutation p.E328K 0.25 tolerated(0.06) benign(0.014) TCGA-FW-A3R5-06 2 18767566 18767566 T G NT5C1B Missense_Mutation p.K131T 0.24 deleterious_low_confidence(0) benign(0.171) TCGA-FW-A3R5-06 2 18768348 18768348 C T NT5C1B Missense_Mutation p.G71E 0.36 deleterious_low_confidence(0) benign(0.169) TCGA-FW-A3R5-06 2 187692815 187692815 C T ZSWIM2 Missense_Mutation p.E600K 0.30 tolerated(1) benign(0) TCGA-FW-A3R5-06 2 187694567 187694567 G A ZSWIM2 Missense_Mutation p.L328F 0.20 tolerated(0.12) benign(0.128) TCGA-FW-A3R5-06 2 18770805 18770805 C T NT5C1B 5'UTR 0.20 TCGA-FW-A3R5-06 2 188228210 188228210 T A CALCRL Missense_Mutation p.I174F 0.19 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 2 188243719 188243719 C T CALCRL Missense_Mutation p.G150R 0.10 deleterious(0.01) possibly_damaging(0.736) TCGA-FW-A3R5-06 2 188332533 188332533 C T TFPI Missense_Mutation p.G252E 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 188349653 188349653 C T TFPI Silent p.R140R 0.10 TCGA-FW-A3R5-06 2 1891351 1891351 G A MYT1L Silent p.L849L 0.16 TCGA-FW-A3R5-06 2 1893043 1893043 C T MYT1L Silent p.R828R 0.25 TCGA-FW-A3R5-06 2 189599363 189599363 C T DIRC1 Nonsense_Mutation p.W95* 0.26 TCGA-FW-A3R5-06 2 189849638 189849638 G A COL3A1 Missense_Mutation p.E78K 0.19 unknown(0) TCGA-FW-A3R5-06 2 189850395 189850395 C T COL3A1 Missense_Mutation p.P113L 0.37 unknown(0) TCGA-FW-A3R5-06 2 189852856 189852856 C T COL3A1 Missense_Mutation p.S193F 0.28 unknown(0) TCGA-FW-A3R5-06 2 189855065 189855065 C T COL3A1 Silent p.F259F 0.32 TCGA-FW-A3R5-06 2 189856244 189856244 C T COL3A1 Missense_Mutation p.A295V 0.31 unknown(0) TCGA-FW-A3R5-06 2 189859501 189859501 G A COL3A1 Missense_Mutation p.D467N 0.22 unknown(0) TCGA-FW-A3R5-06 2 189863437 189863437 G A COL3A1 Missense_Mutation p.G672E 0.35 unknown(0) TCGA-FW-A3R5-06 2 189864086 189864086 C T COL3A1 Missense_Mutation p.P700S 0.20 unknown(0) TCGA-FW-A3R5-06 2 189864087 189864087 C T COL3A1 Missense_Mutation p.P700L 0.19 unknown(0) TCGA-FW-A3R5-06 2 189868140 189868140 C T COL3A1 Missense_Mutation p.P853S 0.25 unknown(0) TCGA-FW-A3R5-06 2 189868721 189868721 C T COL3A1 Missense_Mutation p.P892L 0.13 unknown(0) TCGA-FW-A3R5-06 2 189869062 189869062 G A COL3A1 Missense_Mutation p.R968K 0.27 probably_damaging(0.979) TCGA-FW-A3R5-06 2 189872637 189872637 C T COL3A1 Silent p.I1130I 0.26 TCGA-FW-A3R5-06 2 189873680 189873680 C T COL3A1 Missense_Mutation p.P1186S 0.21 unknown(0) TCGA-FW-A3R5-06 2 189875434 189875434 C T COL3A1 Nonsense_Mutation p.R1358* 0.29 TCGA-FW-A3R5-06 2 189898822 189898822 C T COL5A2 Missense_Mutation p.E1492K 0.38 unknown(0) TCGA-FW-A3R5-06 2 189904209 189904209 C T COL5A2 Silent p.G1238G 0.21 TCGA-FW-A3R5-06 2 189910578 189910578 C T COL5A2 Missense_Mutation p.G1086E 0.28 unknown(0) TCGA-FW-A3R5-06 2 189912956 189912956 C T COL5A2 Silent p.R1060R 0.29 TCGA-FW-A3R5-06 2 189912957 189912957 C T COL5A2 Missense_Mutation p.R1060Q 0.29 unknown(0) TCGA-FW-A3R5-06 2 189923576 189923576 C T COL5A2 Missense_Mutation p.R710K 0.23 unknown(0) TCGA-FW-A3R5-06 2 189931480 189931480 C T COL5A2 Missense_Mutation p.G477E 0.27 probably_damaging(0.998) TCGA-FW-A3R5-06 2 189964865 189964865 C T COL5A2 Missense_Mutation p.G113R 0.24 probably_damaging(0.998) TCGA-FW-A3R5-06 2 190327291 190327291 C T WDR75 Missense_Mutation p.P287L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 190328438 190328438 G A WDR75 Missense_Mutation p.R319Q 0.32 tolerated(0.07) benign(0.233) TCGA-FW-A3R5-06 2 190340087 190340087 G A WDR75 Missense_Mutation p.E813K 0.13 tolerated(0.23) possibly_damaging(0.829) TCGA-FW-A3R5-06 2 190437675 190437675 G A SLC40A1 Missense_Mutation p.S95L 0.18 deleterious(0.04) possibly_damaging(0.686) TCGA-FW-A3R5-06 2 190670557 190670557 C T PMS1 Intron 0.20 TCGA-FW-A3R5-06 2 1906950 1906950 G A MYT1L Missense_Mutation p.S643L 0.32 deleterious(0.01) possibly_damaging(0.559) TCGA-FW-A3R5-06 2 190925110 190925110 A C MSTN Missense_Mutation p.F142C 0.24 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 2 191117026 191117026 G A HIBCH Silent p.F175F 0.26 TCGA-FW-A3R5-06 2 191300967 191300967 C T MFSD6 Missense_Mutation p.S71F 0.28 deleterious(0.01) possibly_damaging(0.766) TCGA-FW-A3R5-06 2 1914014 1914014 G A MYT1L Silent p.L603L 0.50 TCGA-FW-A3R5-06 2 191795172 191795172 C T GLS Missense_Mutation p.P479S 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 191894528 191894528 C T STAT4 3'UTR 0.20 TCGA-FW-A3R5-06 2 191941038 191941038 C T STAT4 Missense_Mutation p.G96E 0.19 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 2 192288828 192288828 C T MYO1B 3'UTR 0.22 TCGA-FW-A3R5-06 2 1926255 1926255 C T MYT1L Missense_Mutation p.G429E 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 1926313 1926313 C T MYT1L Missense_Mutation p.D410N 0.20 deleterious(0.03) possibly_damaging(0.481) TCGA-FW-A3R5-06 2 1926806 1926806 C T MYT1L Silent p.R245R 0.26 TCGA-FW-A3R5-06 2 192700856 192700856 C T SDPR Silent p.E357E 0.07 TCGA-FW-A3R5-06 2 192700901 192700901 G A SDPR Silent p.L342L 0.25 TCGA-FW-A3R5-06 2 192701045 192701045 G A SDPR Silent p.P294P 0.25 TCGA-FW-A3R5-06 2 192701300 192701300 G A SDPR Silent p.P209P 0.23 TCGA-FW-A3R5-06 2 192701434 192701434 C T SDPR Missense_Mutation p.E165K 0.46 tolerated(0.3) probably_damaging(0.999) TCGA-FW-A3R5-06 2 192711529 192711529 C T SDPR Silent p.G41G 0.37 TCGA-FW-A3R5-06 2 192711531 192711531 C T SDPR Missense_Mutation p.G41R 0.20 deleterious(0.01) possibly_damaging(0.839) TCGA-FW-A3R5-06 2 193044295 193044295 G A TMEFF2 Intron 0.43 TCGA-FW-A3R5-06 2 193059173 193059173 G A TMEFF2 Silent p.P26P 0.26 TCGA-FW-A3R5-06 2 196581607 196581607 C T SLC39A10 Missense_Mutation p.S648F 0.16 tolerated(0.13) possibly_damaging(0.748) TCGA-FW-A3R5-06 2 196599884 196599884 C T SLC39A10 3'UTR 0.31 TCGA-FW-A3R5-06 2 196619103 196619103 C T DNAH7 Missense_Mutation p.E3908K 0.12 deleterious(0.02) benign(0.217) TCGA-FW-A3R5-06 2 196636412 196636412 G A DNAH7 Missense_Mutation p.S3802L 0.20 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 196642613 196642613 G A DNAH7 Silent p.L3659L 0.27 TCGA-FW-A3R5-06 2 196642646 196642646 C T DNAH7 Missense_Mutation p.D3648N 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 196651856 196651856 G A DNAH7 Missense_Mutation p.H3586Y 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 196659107 196659107 C T DNAH7 Missense_Mutation p.M3557I 0.29 deleterious(0.02) benign(0.216) TCGA-FW-A3R5-06 2 196659121 196659121 G A DNAH7 Nonsense_Mutation p.R3553* 0.34 TCGA-FW-A3R5-06 2 196659194 196659194 G A DNAH7 Silent p.F3528F 0.28 TCGA-FW-A3R5-06 2 196659215 196659215 C T DNAH7 Silent p.T3521T 0.29 TCGA-FW-A3R5-06 2 196671484 196671484 G A DNAH7 Missense_Mutation p.R3386C 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 196682553 196682553 C T DNAH7 Missense_Mutation p.V3098I 0.16 deleterious(0.01) possibly_damaging(0.898) TCGA-FW-A3R5-06 2 196689128 196689128 C T DNAH7 Missense_Mutation p.E3048K 0.19 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 2 196709789 196709789 C T DNAH7 Missense_Mutation p.R2961Q 0.13 tolerated(0.06) possibly_damaging(0.864) TCGA-FW-A3R5-06 2 196718101 196718101 G A DNAH7 Missense_Mutation p.A2916V 0.09 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 2 196722403 196722403 G T DNAH7 Silent p.V2704V 0.19 TCGA-FW-A3R5-06 2 196723513 196723513 C T DNAH7 Missense_Mutation p.M2584I 0.25 tolerated(0.24) benign(0.065) TCGA-FW-A3R5-06 2 196729430 196729430 G A DNAH7 Nonsense_Mutation p.R2317* 0.26 TCGA-FW-A3R5-06 2 196737056 196737056 G A DNAH7 Missense_Mutation p.S2184F 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 2 196749452 196749452 G A DNAH7 Nonsense_Mutation p.R1874* 0.34 TCGA-FW-A3R5-06 2 196759830 196759830 G A DNAH7 Missense_Mutation p.S1589F 0.28 deleterious(0.01) benign(0.01) TCGA-FW-A3R5-06 2 196771386 196771386 C T DNAH7 Silent p.L1444L 0.30 TCGA-FW-A3R5-06 2 196774900 196774900 G A DNAH7 Missense_Mutation p.H1319Y 0.29 tolerated(0.93) possibly_damaging(0.904) TCGA-FW-A3R5-06 2 196786849 196786849 T C DNAH7 Missense_Mutation p.R1300G 0.33 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 2 196799399 196799399 C T DNAH7 Silent p.E1129E 0.29 TCGA-FW-A3R5-06 2 196801382 196801382 G A DNAH7 Silent p.F1071F 0.33 TCGA-FW-A3R5-06 2 196801453 196801453 C T DNAH7 Missense_Mutation p.E1048K 0.08 tolerated(0.71) benign(0.324) TCGA-FW-A3R5-06 2 196852768 196852768 G A DNAH7 Silent p.L513L 0.38 TCGA-FW-A3R5-06 2 196865582 196865582 G A DNAH7 Missense_Mutation p.P400L 0.26 tolerated(0.06) benign(0.082) TCGA-FW-A3R5-06 2 196913028 196913028 T C DNAH7 Missense_Mutation p.Q81R 0.24 tolerated_low_confidence(0.41) benign(0.021) TCGA-FW-A3R5-06 2 197066061 197066061 G A HECW2 Silent p.S1553S 0.28 TCGA-FW-A3R5-06 2 197183412 197183412 C T HECW2 Silent p.G734G 0.28 TCGA-FW-A3R5-06 2 197183905 197183905 G A HECW2 Missense_Mutation p.S570F 0.19 deleterious_low_confidence(0.05) benign(0.064) TCGA-FW-A3R5-06 2 197184344 197184344 C T HECW2 Missense_Mutation p.E424K 0.35 deleterious_low_confidence(0.01) benign(0.296) TCGA-FW-A3R5-06 2 197189708 197189708 C T HECW2 Missense_Mutation p.R246Q 0.31 tolerated(0.1) possibly_damaging(0.843) TCGA-FW-A3R5-06 2 197189858 197189858 C T HECW2 Missense_Mutation p.G196E 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 197208454 197208454 C T HECW2 Silent p.K109K 0.26 TCGA-FW-A3R5-06 2 197298127 197298127 C T HECW2 Silent p.E7E 0.29 TCGA-FW-A3R5-06 2 197596851 197596851 C T CCDC150 Missense_Mutation p.S1055F 0.22 deleterious(0) benign(0.424) TCGA-FW-A3R5-06 2 197674171 197674171 G A C2orf66 5'UTR 0.35 TCGA-FW-A3R5-06 2 198051774 198051774 G A ANKRD44 Silent p.I28I 0.31 TCGA-FW-A3R5-06 2 198436624 198436624 G A RFTN2 3'UTR 0.31 TCGA-FW-A3R5-06 2 198570227 198570227 C T MARS2 Missense_Mutation p.S33F 0.22 tolerated_low_confidence(0.19) benign(0.073) TCGA-FW-A3R5-06 2 198593232 198593232 C T BOLL 3'UTR 0.27 TCGA-FW-A3R5-06 2 198650731 198650731 C T BOLL 5'UTR 0.22 TCGA-FW-A3R5-06 2 198948911 198948911 C T PLCL1 Nonsense_Mutation p.R224* 0.28 TCGA-FW-A3R5-06 2 198949941 198949941 G A PLCL1 Missense_Mutation p.R567K 0.22 tolerated(0.38) benign(0.005) TCGA-FW-A3R5-06 2 198950188 198950188 C T PLCL1 Silent p.I649I 0.28 TCGA-FW-A3R5-06 2 198950722 198950722 C T PLCL1 Silent p.P827P 0.27 TCGA-FW-A3R5-06 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.31 tolerated(0.12) benign(0.043) TCGA-FW-A3R5-06 2 201371607 201371607 G A KCTD18 Missense_Mutation p.R45C 0.33 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 2 201438338 201438338 C T SGOL2 Missense_Mutation p.P1090L 0.32 tolerated(0.42) benign(0.033) TCGA-FW-A3R5-06 2 201438535 201438535 C T SGOL2 Missense_Mutation p.R1156C 0.25 tolerated(0.21) benign(0) TCGA-FW-A3R5-06 2 201460056 201460056 G A AOX1 Missense_Mutation p.M55I 0.31 deleterious(0) benign(0.12) TCGA-FW-A3R5-06 2 201485454 201485454 G A AOX1 Missense_Mutation p.E596K 0.27 deleterious(0.01) possibly_damaging(0.521) TCGA-FW-A3R5-06 2 201521630 201521630 G A AOX1 Missense_Mutation p.M1047I 0.12 tolerated(0.13) benign(0.144) TCGA-FW-A3R5-06 2 20169345 20169345 G A WDR35 Missense_Mutation p.P302S 0.34 deleterious(0.01) benign(0.005) TCGA-FW-A3R5-06 2 201717933 201717933 T C CLK1 3'UTR 0.23 TCGA-FW-A3R5-06 2 201746149 201746149 G A PPIL3 Missense_Mutation p.L83F 0.36 deleterious(0.04) possibly_damaging(0.765) TCGA-FW-A3R5-06 2 202002602 202002602 C T CFLAR Intron 0.34 TCGA-FW-A3R5-06 2 202003661 202003661 C T CFLAR Intron 0.18 TCGA-FW-A3R5-06 2 202052442 202052442 G A CASP10 Missense_Mutation p.E121K 0.26 deleterious(0) probably_damaging(0.91) TCGA-FW-A3R5-06 2 20205896 20205896 G A MATN3 Silent p.I133I 0.37 TCGA-FW-A3R5-06 2 202060586 202060586 C T CASP10 Missense_Mutation p.P200L 0.31 deleterious(0.02) possibly_damaging(0.828) TCGA-FW-A3R5-06 2 202072836 202072836 C T CASP10 Silent p.G284G 0.33 TCGA-FW-A3R5-06 2 202216167 202216167 G A ALS2CR12 5'UTR 0.36 TCGA-FW-A3R5-06 2 202245709 202245709 G A TRAK2 Missense_Mutation p.P768S 0.08 tolerated(0.07) benign(0.072) TCGA-FW-A3R5-06 2 202400940 202400940 G A ALS2CR11 Missense_Mutation p.P437L 0.34 deleterious(0.02) benign(0.133) TCGA-FW-A3R5-06 2 202446915 202446915 C T ALS2CR11 Missense_Mutation p.R181Q 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-FW-A3R5-06 2 202446936 202446936 G A ALS2CR11 Missense_Mutation p.P174L 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 202552063 202552063 G A MPP4 Missense_Mutation p.S104F 0.21 deleterious(0) probably_damaging(0.93) TCGA-FW-A3R5-06 2 202593359 202593359 G A ALS2 Missense_Mutation p.S906F 0.32 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 2 202617958 202617958 G A ALS2 Missense_Mutation p.P550S 0.32 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 202725491 202725491 A G CDK15 Intron 0.28 TCGA-FW-A3R5-06 2 202900660 202900660 C T FZD7 Silent p.F430F 0.22 TCGA-FW-A3R5-06 2 203420344 203420344 C T BMPR2 Silent p.T652T 0.21 TCGA-FW-A3R5-06 2 203420441 203420441 C T BMPR2 Missense_Mutation p.L685F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 203621974 203621974 C T FAM117B Silent p.P381P 0.27 TCGA-FW-A3R5-06 2 203630246 203630246 C T FAM117B Missense_Mutation p.S510F 0.19 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 203834641 203834641 G A CARF Splice_Site p.X318_splice 0.25 TCGA-FW-A3R5-06 2 204002981 204002981 C T NBEAL1 Silent p.I1525I 0.25 TCGA-FW-A3R5-06 2 204335010 204335010 G A RAPH1 Intron 0.22 TCGA-FW-A3R5-06 2 204591684 204591684 G A CD28 Silent p.K127K 0.17 TCGA-FW-A3R5-06 2 206050515 206050515 C T PARD3B Missense_Mutation p.A589V 0.28 tolerated(0.33) benign(0.006) TCGA-FW-A3R5-06 2 206166306 206166306 G A PARD3B Silent p.T775T 0.37 TCGA-FW-A3R5-06 2 206166389 206166389 G A PARD3B Missense_Mutation p.R803K 0.27 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 2 206305266 206305266 C T PARD3B Missense_Mutation p.P910S 0.39 tolerated(0.32) benign(0.044) TCGA-FW-A3R5-06 2 206480313 206480313 C T PARD3B Missense_Mutation p.L1070F 0.21 tolerated(0.35) possibly_damaging(0.816) TCGA-FW-A3R5-06 2 206547981 206547981 G A NRP2 5'UTR 0.32 TCGA-FW-A3R5-06 2 206580936 206580936 C T NRP2 Missense_Mutation p.R91W 0.30 tolerated(0.15) probably_damaging(1) TCGA-FW-A3R5-06 2 206610475 206610475 C T NRP2 Silent p.F549F 0.30 TCGA-FW-A3R5-06 2 206610476 206610476 G A NRP2 Missense_Mutation p.E550K 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 2 206610599 206610599 G A NRP2 Missense_Mutation p.G591S 0.24 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 2 206628459 206628459 C T NRP2 Silent p.L702L 0.25 TCGA-FW-A3R5-06 2 206869639 206869639 G A INO80D Missense_Mutation p.P846L 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 206869967 206869967 G A INO80D Missense_Mutation p.R737C 0.22 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-FW-A3R5-06 2 207041526 207041526 C T GPR1 Missense_Mutation p.R149Q 0.29 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 2 207169523 207169523 G A ZDBF2 Missense_Mutation p.E91K 0.18 tolerated(0.67) benign(0.292) TCGA-FW-A3R5-06 2 207169910 207169910 G A ZDBF2 Missense_Mutation p.D220N 0.13 tolerated(0.15) benign(0.005) TCGA-FW-A3R5-06 2 207170549 207170549 G A ZDBF2 Missense_Mutation p.E433K 0.31 tolerated(0.11) benign(0) TCGA-FW-A3R5-06 2 207170663 207170663 G A ZDBF2 Missense_Mutation p.E471K 0.30 tolerated(0.2) possibly_damaging(0.678) TCGA-FW-A3R5-06 2 207170729 207170729 G A ZDBF2 Missense_Mutation p.E493K 0.19 deleterious(0) possibly_damaging(0.678) TCGA-FW-A3R5-06 2 207173411 207173411 G A ZDBF2 Missense_Mutation p.E1387K 0.36 tolerated(0.08) benign(0.292) TCGA-FW-A3R5-06 2 207174649 207174649 G A ZDBF2 Silent p.R1799R 0.11 TCGA-FW-A3R5-06 2 207174673 207174673 C A ZDBF2 Silent p.V1807V 0.36 TCGA-FW-A3R5-06 2 207174689 207174689 G A ZDBF2 Missense_Mutation p.D1813N 0.30 tolerated(0.12) possibly_damaging(0.539) TCGA-FW-A3R5-06 2 207175678 207175678 G A ZDBF2 Silent p.K2142K 0.21 TCGA-FW-A3R5-06 2 207176205 207176205 G A ZDBF2 Missense_Mutation p.G2318D 0.49 tolerated(0.23) benign(0) TCGA-FW-A3R5-06 2 207429762 207429762 C T ADAM23 Missense_Mutation p.S455F 0.26 deleterious(0.02) benign(0.303) TCGA-FW-A3R5-06 2 207509150 207509150 C T AC010731.4 RNA 0.12 TCGA-FW-A3R5-06 2 207528044 207528044 C T DYTN Missense_Mutation p.E406K 0.27 tolerated(0.25) benign(0.006) TCGA-FW-A3R5-06 2 207564458 207564458 C T DYTN Missense_Mutation p.G238R 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 207564903 207564903 G A DYTN Missense_Mutation p.P174L 0.29 tolerated(0.4) benign(0.243) TCGA-FW-A3R5-06 2 207620226 207620226 G A MDH1B Silent p.A139A 0.24 TCGA-FW-A3R5-06 2 207636626 207636626 C T FASTKD2 Silent p.A333A 0.18 TCGA-FW-A3R5-06 2 20838369 20838369 G A HS1BP3 Silent p.S150S 0.26 TCGA-FW-A3R5-06 2 208773295 208773295 G A PLEKHM3 Silent p.F631F 0.26 TCGA-FW-A3R5-06 2 208842195 208842195 G T PLEKHM3 Missense_Mutation p.F242L 0.23 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 2 20886634 20886634 G A C2orf43 3'UTR 0.10 TCGA-FW-A3R5-06 2 208993030 208993030 C T CRYGC Missense_Mutation p.G141E 0.29 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 2 208993031 208993031 C T CRYGC Missense_Mutation p.G141R 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 209025752 209025752 G A CRYGA Missense_Mutation p.L101F 0.34 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 2 209045522 209045522 C T C2orf80 Missense_Mutation p.E105K 0.25 tolerated(0.14) probably_damaging(0.999) TCGA-FW-A3R5-06 2 209165796 209165796 C T PIKFYVE Nonsense_Mutation p.R396* 0.20 TCGA-FW-A3R5-06 2 209179022 209179022 C T PIKFYVE Silent p.S567S 0.25 TCGA-FW-A3R5-06 2 209190194 209190194 C T PIKFYVE Missense_Mutation p.P887S 0.26 tolerated_low_confidence(0.71) benign(0.001) TCGA-FW-A3R5-06 2 209190805 209190805 C T PIKFYVE Silent p.L1090L 0.24 TCGA-FW-A3R5-06 2 209200558 209200558 C T PIKFYVE Missense_Mutation p.S1433F 0.08 deleterious(0) possibly_damaging(0.707) TCGA-FW-A3R5-06 2 209358274 209358274 G A PTH2R Missense_Mutation p.E515K 0.26 tolerated(0.2) benign(0.01) TCGA-FW-A3R5-06 2 20939734 20939734 G A C2orf43 Missense_Mutation p.L234F 0.25 deleterious(0.03) benign(0.213) TCGA-FW-A3R5-06 2 210557911 210557911 C T MAP2 Silent p.P339P 0.25 TCGA-FW-A3R5-06 2 210560616 210560616 C T MAP2 Missense_Mutation p.A1241V 0.12 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-FW-A3R5-06 2 210574720 210574720 C T MAP2 Silent p.T1605T 0.32 TCGA-FW-A3R5-06 2 210595030 210595030 C A MAP2 Missense_Mutation p.S1798Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 210595031 210595031 C T MAP2 Silent p.S1798S 0.17 TCGA-FW-A3R5-06 2 211018911 211018911 G A KANSL1L Silent p.F132F 0.29 TCGA-FW-A3R5-06 2 211158482 211158482 C T MYL1 Missense_Mutation p.G174D 0.20 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 211163161 211163161 C T MYL1 Missense_Mutation p.G96E 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-FW-A3R5-06 2 211163245 211163245 G A MYL1 Missense_Mutation p.S68F 0.36 tolerated(0.1) possibly_damaging(0.878) TCGA-FW-A3R5-06 2 211168299 211168299 G A MYL1 Intron 0.22 TCGA-FW-A3R5-06 2 211179661 211179661 C T MYL1 Missense_Mutation p.E36K 0.28 tolerated(0.26) benign(0.037) TCGA-FW-A3R5-06 2 211438116 211438116 A T CPS1 Missense_Mutation p.N80I 0.18 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 211456679 211456679 G A CPS1 Missense_Mutation p.D364N 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 211521331 211521331 C T CPS1 Missense_Mutation p.T1220I 0.20 deleterious(0) possibly_damaging(0.826) TCGA-FW-A3R5-06 2 211523399 211523399 G A CPS1 Missense_Mutation p.G1254E 0.10 tolerated(0.13) possibly_damaging(0.901) TCGA-FW-A3R5-06 2 211541795 211541795 C T CPS1 Missense_Mutation p.H1453Y 0.19 deleterious(0) benign(0.331) TCGA-FW-A3R5-06 2 21225122 21225122 G A APOB Missense_Mutation p.P4391L 0.32 benign(0.272) TCGA-FW-A3R5-06 2 21225438 21225438 C T APOB Missense_Mutation p.A4286T 0.28 benign(0.002) TCGA-FW-A3R5-06 2 21227219 21227219 G A APOB Silent p.S4003S 0.17 TCGA-FW-A3R5-06 2 21227996 21227996 G A APOB Missense_Mutation p.S3915F 0.29 probably_damaging(0.988) TCGA-FW-A3R5-06 2 21228515 21228515 G A APOB Missense_Mutation p.S3742L 0.24 benign(0.005) TCGA-FW-A3R5-06 2 21228550 21228550 G A APOB Silent p.F3730F 0.25 TCGA-FW-A3R5-06 2 21229058 21229058 G A APOB Missense_Mutation p.S3561F 0.29 benign(0.162) TCGA-FW-A3R5-06 2 21229235 21229235 C T APOB Missense_Mutation p.G3502D 0.31 probably_damaging(0.918) TCGA-FW-A3R5-06 2 212295675 212295675 C T ERBB4 Missense_Mutation p.G880R 0.28 deleterious(0) possibly_damaging(0.714) TCGA-FW-A3R5-06 2 21229706 21229706 G A APOB Missense_Mutation p.S3345L 0.24 probably_damaging(0.997) TCGA-FW-A3R5-06 2 21229917 21229917 G A APOB Missense_Mutation p.P3275S 0.25 probably_damaging(0.999) TCGA-FW-A3R5-06 2 21230008 21230008 C T APOB Silent p.R3244R 0.22 TCGA-FW-A3R5-06 2 21230572 21230572 C T APOB Silent p.L3056L 0.25 TCGA-FW-A3R5-06 2 21230894 21230894 G A APOB Missense_Mutation p.T2949I 0.23 benign(0.07) TCGA-FW-A3R5-06 2 21231189 21231189 C T APOB Missense_Mutation p.E2851K 0.21 benign(0.265) TCGA-FW-A3R5-06 2 21231216 21231216 C T APOB Missense_Mutation p.E2842K 0.10 benign(0.048) TCGA-FW-A3R5-06 2 21231233 21231233 C T APOB Missense_Mutation p.R2836K 0.24 benign(0.192) TCGA-FW-A3R5-06 2 21231373 21231373 G A APOB Silent p.I2789I 0.37 TCGA-FW-A3R5-06 2 21231577 21231577 G A APOB Silent p.F2721F 0.29 TCGA-FW-A3R5-06 2 21232556 21232556 C T APOB Missense_Mutation p.G2395E 0.24 possibly_damaging(0.844) TCGA-FW-A3R5-06 2 21232666 21232666 C T APOB Missense_Mutation p.M2358I 0.19 benign(0.001) TCGA-FW-A3R5-06 2 21232704 21232704 C T APOB Missense_Mutation p.E2346K 0.20 benign(0.002) TCGA-FW-A3R5-06 2 21233085 21233085 G A APOB Missense_Mutation p.R2219C 0.18 benign(0.003) TCGA-FW-A3R5-06 2 21233393 21233393 C T APOB Missense_Mutation p.G2116E 0.27 benign(0.162) TCGA-FW-A3R5-06 2 21233486 21233486 C T APOB Missense_Mutation p.R2085Q 0.22 benign(0.002) TCGA-FW-A3R5-06 2 21233769 21233769 C T APOB Missense_Mutation p.E1991K 0.25 possibly_damaging(0.492) TCGA-FW-A3R5-06 2 21234197 21234197 G A APOB Missense_Mutation p.S1848L 0.10 benign(0.084) TCGA-FW-A3R5-06 2 21234549 21234549 C T APOB Missense_Mutation p.V1731I 0.21 benign(0) TCGA-FW-A3R5-06 2 21234550 21234550 C T APOB Silent p.K1730K 0.22 TCGA-FW-A3R5-06 2 21234769 21234769 C T APOB Silent p.T1657T 0.19 TCGA-FW-A3R5-06 2 21234891 21234891 C T APOB Missense_Mutation p.G1617R 0.28 probably_damaging(0.999) TCGA-FW-A3R5-06 2 21235097 21235097 G A APOB Missense_Mutation p.S1548F 0.21 probably_damaging(0.996) TCGA-FW-A3R5-06 2 21235111 21235111 G A APOB Silent p.S1543S 0.21 TCGA-FW-A3R5-06 2 21235332 21235332 G A APOB Missense_Mutation p.H1470Y 0.25 benign(0.004) TCGA-FW-A3R5-06 2 21235486 21235486 G A APOB Silent p.F1418F 0.30 TCGA-FW-A3R5-06 2 21236046 21236046 G A APOB Missense_Mutation p.S1401F 0.31 probably_damaging(0.996) TCGA-FW-A3R5-06 2 21236075 21236075 C T APOB Missense_Mutation p.M1391I 0.32 benign(0.001) TCGA-FW-A3R5-06 2 21245915 21245915 C T APOB Splice_Site p.X869_splice 0.29 TCGA-FW-A3R5-06 2 21249714 21249714 G A APOB Silent p.V730V 0.26 TCGA-FW-A3R5-06 2 21251345 21251345 G A APOB Silent p.A561A 0.14 TCGA-FW-A3R5-06 2 21252800 21252800 C T APOB Silent p.G480G 0.23 TCGA-FW-A3R5-06 2 212537927 212537927 C T ERBB4 Missense_Mutation p.E560K 0.27 tolerated(0.41) benign(0.018) TCGA-FW-A3R5-06 2 21255406 21255406 G A APOB Missense_Mutation p.S391F 0.30 benign(0.023) TCGA-FW-A3R5-06 2 21263862 21263862 C T APOB Missense_Mutation p.A111T 0.19 possibly_damaging(0.5) TCGA-FW-A3R5-06 2 21265245 21265245 C T APOB Silent p.R75R 0.27 TCGA-FW-A3R5-06 2 213403307 213403307 C A ERBB4 5'UTR 0.21 TCGA-FW-A3R5-06 2 213872121 213872121 G A IKZF2 Missense_Mutation p.S515L 0.19 deleterious(0) possibly_damaging(0.529) TCGA-FW-A3R5-06 2 213872705 213872705 G A IKZF2 Silent p.A320A 0.21 TCGA-FW-A3R5-06 2 214228839 214228839 G A SPAG16 Missense_Mutation p.G268R 0.27 tolerated(0.08) benign(0.002) TCGA-FW-A3R5-06 2 214727255 214727255 G A SPAG16 Missense_Mutation p.D373N 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-FW-A3R5-06 2 214794828 214794828 C T SPAG16 Silent p.S453S 0.39 TCGA-FW-A3R5-06 2 215301392 215301392 G A VWC2L Missense_Mutation p.E144K 0.18 tolerated(0.16) probably_damaging(0.969) TCGA-FW-A3R5-06 2 215301468 215301468 C T VWC2L Missense_Mutation p.P169L 0.30 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 215440421 215440421 G A VWC2L Silent p.T182T 0.19 TCGA-FW-A3R5-06 2 215440563 215440563 G A VWC2L 3'UTR 0.21 TCGA-FW-A3R5-06 2 215802311 215802311 G A ABCA12 Missense_Mutation p.H2489Y 0.27 tolerated(0.61) possibly_damaging(0.562) TCGA-FW-A3R5-06 2 215807692 215807692 C T ABCA12 Missense_Mutation p.G2465R 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 215809796 215809796 C T ABCA12 Silent p.S2424S 0.20 TCGA-FW-A3R5-06 2 215831647 215831647 G A ABCA12 Missense_Mutation p.L1937F 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 2 215833488 215833488 G A ABCA12 Missense_Mutation p.R1912C 0.21 deleterious(0) possibly_damaging(0.766) TCGA-FW-A3R5-06 2 215848384 215848384 C T ABCA12 Missense_Mutation p.E1457K 0.18 deleterious(0.05) benign(0.142) TCGA-FW-A3R5-06 2 215852476 215852476 G A ABCA12 Missense_Mutation p.P1291S 0.15 tolerated(0.36) probably_damaging(0.981) TCGA-FW-A3R5-06 2 215866333 215866333 C T ABCA12 Missense_Mutation p.E938K 0.26 tolerated(0.12) benign(0.077) TCGA-FW-A3R5-06 2 215876180 215876180 C T ABCA12 Missense_Mutation p.G772E 0.28 deleterious(0.03) possibly_damaging(0.616) TCGA-FW-A3R5-06 2 215896555 215896555 G A ABCA12 Silent p.L351L 0.29 TCGA-FW-A3R5-06 2 215910690 215910690 C T ABCA12 Missense_Mutation p.R248K 0.25 tolerated(1) benign(0) TCGA-FW-A3R5-06 2 215928826 215928826 G A ABCA12 Missense_Mutation p.R94C 0.24 tolerated(0.06) possibly_damaging(0.871) TCGA-FW-A3R5-06 2 216288081 216288081 G A FN1 Missense_Mutation p.P462L 0.38 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 2 216296644 216296644 G A FN1 Silent p.T153T 0.05 TCGA-FW-A3R5-06 2 217124258 217124258 G A MARCH4 Missense_Mutation p.S337F 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-FW-A3R5-06 2 217124264 217124264 C T MARCH4 Missense_Mutation p.R335Q 0.22 tolerated(0.39) benign(0.002) TCGA-FW-A3R5-06 2 217279704 217279704 C T SMARCAL1 Nonsense_Mutation p.Q93* 0.28 TCGA-FW-A3R5-06 2 217525496 217525496 C T IGFBP2 Missense_Mutation p.P220L 0.33 tolerated(0.21) benign(0.045) TCGA-FW-A3R5-06 2 218683158 218683158 G A TNS1 Silent p.F1195F 0.35 TCGA-FW-A3R5-06 2 218683210 218683210 G A TNS1 Missense_Mutation p.P1178L 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 2 218700808 218700808 G A TNS1 Missense_Mutation p.S920F 0.36 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 218925040 218925040 G A CXCR2P1 RNA 0.25 TCGA-FW-A3R5-06 2 218925373 218925373 G A CXCR2P1 RNA 0.10 TCGA-FW-A3R5-06 2 218940025 218940025 G A RUFY4 Silent p.G290G 0.25 TCGA-FW-A3R5-06 2 218940147 218940147 G A RUFY4 Missense_Mutation p.G331E 0.20 tolerated(0.06) benign(0.236) TCGA-FW-A3R5-06 2 218940349 218940349 G A RUFY4 Silent p.Q398Q 0.39 TCGA-FW-A3R5-06 2 219000422 219000422 G A CXCR2 Missense_Mutation p.E300K 0.22 tolerated(0.14) benign(0.064) TCGA-FW-A3R5-06 2 219000679 219000679 C T CXCR2 3'UTR 0.28 TCGA-FW-A3R5-06 2 219000761 219000761 C T CXCR2 3'UTR 0.25 TCGA-FW-A3R5-06 2 219232205 219232205 G A C2orf62 Silent p.E295E 0.29 TCGA-FW-A3R5-06 2 219249050 219249050 G A SLC11A1 Missense_Mutation p.E79K 0.24 deleterious(0) possibly_damaging(0.69) TCGA-FW-A3R5-06 2 219249889 219249889 G A SLC11A1 Nonsense_Mutation p.W98* 0.09 TCGA-FW-A3R5-06 2 219249890 219249890 G A SLC11A1 Nonsense_Mutation p.W98* 0.09 TCGA-FW-A3R5-06 2 219254613 219254613 C T SLC11A1 Silent p.A272A 0.33 TCGA-FW-A3R5-06 2 219256209 219256209 C T SLC11A1 Silent p.F385F 0.40 TCGA-FW-A3R5-06 2 219294035 219294035 G A VIL1 Missense_Mutation p.D199N 0.30 deleterious(0.02) possibly_damaging(0.494) TCGA-FW-A3R5-06 2 219299356 219299356 G A VIL1 Silent p.R536R 0.25 TCGA-FW-A3R5-06 2 219411757 219411757 G A USP37 Missense_Mutation p.L163F 0.23 tolerated(0.09) probably_damaging(0.987) TCGA-FW-A3R5-06 2 219423367 219423367 G A USP37 Silent p.L4L 0.29 TCGA-FW-A3R5-06 2 219483369 219483369 G A PLCD4 Silent p.E83E 0.30 TCGA-FW-A3R5-06 2 219492822 219492822 C T PLCD4 Silent p.F281F 0.24 TCGA-FW-A3R5-06 2 219499293 219499293 G A PLCD4 Silent p.Q612Q 0.28 TCGA-FW-A3R5-06 2 219521016 219521016 G A ZNF142 Missense_Mutation p.S46F 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.549) TCGA-FW-A3R5-06 2 219536728 219536728 C T RNF25 5'UTR 0.15 TCGA-FW-A3R5-06 2 219538350 219538350 C T STK36 Silent p.V29V 0.16 TCGA-FW-A3R5-06 2 219553448 219553448 C T STK36 Missense_Mutation p.S470F 0.30 deleterious(0) possibly_damaging(0.738) TCGA-FW-A3R5-06 2 219679167 219679167 C T CYP27A1 Missense_Mutation p.L417F 0.28 tolerated(0.28) benign(0.049) TCGA-FW-A3R5-06 2 219736279 219736279 C T WNT6 Missense_Mutation p.S125F 0.29 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 2 219738374 219738374 C T WNT6 Missense_Mutation p.S302F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 219754737 219754737 C T WNT10A Silent p.I136I 0.11 TCGA-FW-A3R5-06 2 219856910 219856910 C T CRYBA2 Missense_Mutation p.G73R 0.32 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 219868840 219868840 C T CCDC108 Missense_Mutation p.E1797K 0.10 tolerated(0.32) unknown(0) TCGA-FW-A3R5-06 2 219874711 219874711 C T CCDC108 Missense_Mutation p.E1469K 0.19 tolerated(0.47) benign(0.133) TCGA-FW-A3R5-06 2 219875364 219875364 G A CCDC108 Silent p.G1404G 0.32 TCGA-FW-A3R5-06 2 219883777 219883777 C T CCDC108 Missense_Mutation p.D1200N 0.07 tolerated(0.15) benign(0.139) TCGA-FW-A3R5-06 2 219884425 219884425 C T CCDC108 Silent p.E1092E 0.18 TCGA-FW-A3R5-06 2 219888004 219888004 C T CCDC108 Nonsense_Mutation p.W915* 0.21 TCGA-FW-A3R5-06 2 219892338 219892338 C T CCDC108 Intron 0.26 TCGA-FW-A3R5-06 2 219894230 219894230 G A CCDC108 Silent p.A515A 0.20 TCGA-FW-A3R5-06 2 219896315 219896315 G A CCDC108 Silent p.A237A 0.21 TCGA-FW-A3R5-06 2 219903697 219903697 G A CCDC108 Missense_Mutation p.S25F 0.30 deleterious_low_confidence(0.02) benign(0.01) TCGA-FW-A3R5-06 2 219920427 219920427 G A IHH Silent p.F246F 0.29 TCGA-FW-A3R5-06 2 220037701 220037701 G A CNPPD1 Silent p.P280P 0.07 TCGA-FW-A3R5-06 2 220047103 220047103 C T FAM134A Missense_Mutation p.P462S 0.31 tolerated(0.18) benign(0.005) TCGA-FW-A3R5-06 2 220097337 220097337 C T ANKZF1 Nonsense_Mutation p.R164* 0.27 TCGA-FW-A3R5-06 2 220099597 220099597 G A ANKZF1 Silent p.V418V 0.20 TCGA-FW-A3R5-06 2 220104315 220104315 C T GLB1L Silent p.E290E 0.30 TCGA-FW-A3R5-06 2 220107272 220107272 G A GLB1L Nonsense_Mutation p.R139* 0.32 TCGA-FW-A3R5-06 2 220108019 220108019 G A GLB1L Silent p.F30F 0.28 TCGA-FW-A3R5-06 2 220108362 220108362 G A GLB1L 5'UTR 0.12 TCGA-FW-A3R5-06 2 220116411 220116411 C T TUBA4A Missense_Mutation p.R84Q 0.40 deleterious_low_confidence(0.01) benign(0.345) TCGA-FW-A3R5-06 2 220136346 220136346 G A TUBA4B RNA 0.24 TCGA-FW-A3R5-06 2 220156210 220156210 G A PTPRN Missense_Mutation p.P904L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 220158923 220158923 G A PTPRN Intron 0.36 TCGA-FW-A3R5-06 2 220161176 220161176 G A PTPRN Silent p.I791I 0.26 TCGA-FW-A3R5-06 2 220166353 220166353 C T PTPRN Silent p.L361L 0.32 TCGA-FW-A3R5-06 2 220167069 220167069 C T PTPRN Missense_Mutation p.G262R 0.33 tolerated(0.27) benign(0.107) TCGA-FW-A3R5-06 2 220168485 220168485 G A PTPRN Missense_Mutation p.R117C 0.25 deleterious(0.02) possibly_damaging(0.677) TCGA-FW-A3R5-06 2 220239650 220239650 G A DNPEP Missense_Mutation p.P445L 0.26 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 2 220312757 220312757 G A SPEG Missense_Mutation p.E293K 0.26 benign(0.079) TCGA-FW-A3R5-06 2 220326713 220326713 G A SPEG Missense_Mutation p.M850I 0.28 possibly_damaging(0.684) TCGA-FW-A3R5-06 2 220330896 220330896 C T SPEG Intron 0.33 TCGA-FW-A3R5-06 2 220333389 220333389 G A SPEG Missense_Mutation p.G1078S 0.35 probably_damaging(1) TCGA-FW-A3R5-06 2 220333881 220333881 G A SPEG Silent p.S1165S 0.38 TCGA-FW-A3R5-06 2 220337666 220337666 G A SPEG Nonsense_Mutation p.W1332* 0.28 TCGA-FW-A3R5-06 2 220348083 220348083 G A SPEG Silent p.G1966G 0.20 TCGA-FW-A3R5-06 2 220348138 220348138 G A SPEG Missense_Mutation p.E1985K 0.33 benign(0.002) TCGA-FW-A3R5-06 2 220348866 220348866 G A SPEG Silent p.K2227K 0.19 TCGA-FW-A3R5-06 2 220348929 220348929 C T SPEG Silent p.I2248I 0.43 TCGA-FW-A3R5-06 2 220355492 220355492 G A SPEG Missense_Mutation p.V3067M 0.23 possibly_damaging(0.874) TCGA-FW-A3R5-06 2 220356557 220356557 G A SPEG Missense_Mutation p.D3143N 0.25 possibly_damaging(0.639) TCGA-FW-A3R5-06 2 220396532 220396532 C T ASIC4 Missense_Mutation p.S339L 0.15 tolerated(0.83) benign(0.003) TCGA-FW-A3R5-06 2 220412343 220412343 G A TMEM198 Silent p.A94A 0.36 TCGA-FW-A3R5-06 2 220413939 220413939 G A TMEM198 Missense_Mutation p.E270K 0.07 tolerated(0.37) benign(0.292) TCGA-FW-A3R5-06 2 220437072 220437072 C T INHA 5'UTR 0.23 TCGA-FW-A3R5-06 2 220466101 220466101 C T STK11IP Missense_Mutation p.S80F 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 220466102 220466102 C T STK11IP Silent p.S80S 0.24 TCGA-FW-A3R5-06 2 220472776 220472776 C T STK11IP Silent p.F420F 0.44 TCGA-FW-A3R5-06 2 220479908 220479908 C T STK11IP Missense_Mutation p.P999S 0.33 tolerated(0.69) benign(0.001) TCGA-FW-A3R5-06 2 220480833 220480833 C T STK11IP Missense_Mutation p.A1073V 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-FW-A3R5-06 2 220494887 220494887 C T SLC4A3 Silent p.P235P 0.17 TCGA-FW-A3R5-06 2 220494888 220494888 C T SLC4A3 Missense_Mutation p.R236W 0.18 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-FW-A3R5-06 2 220496784 220496784 C T SLC4A3 Silent p.A329A 0.26 TCGA-FW-A3R5-06 2 220500079 220500079 C T SLC4A3 Silent p.I638I 0.27 TCGA-FW-A3R5-06 2 220501453 220501453 C T SLC4A3 Missense_Mutation p.L825F 0.30 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 2 220503474 220503474 C T SLC4A3 Missense_Mutation p.S996L 0.26 deleterious(0) benign(0.031) TCGA-FW-A3R5-06 2 220504278 220504278 C T SLC4A3 Missense_Mutation p.S1060F 0.29 tolerated(0.69) possibly_damaging(0.571) TCGA-FW-A3R5-06 2 222294837 222294837 G A EPHA4 Missense_Mutation p.P844L 0.25 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 222307703 222307703 G A EPHA4 Silent p.L640L 0.28 TCGA-FW-A3R5-06 2 222429004 222429004 G A EPHA4 Silent p.T90T 0.07 TCGA-FW-A3R5-06 2 223386575 223386575 G A SGPP2 Silent p.L156L 0.26 TCGA-FW-A3R5-06 2 223423135 223423135 G A SGPP2 Missense_Mutation p.D240N 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 2 223559950 223559950 G A MOGAT1 Missense_Mutation p.G266R 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 223795394 223795394 C T ACSL3 Silent p.G532G 0.35 TCGA-FW-A3R5-06 2 223806250 223806250 C T ACSL3 Missense_Mutation p.R681C 0.36 tolerated(0.06) benign(0.001) TCGA-FW-A3R5-06 2 224824592 224824592 C T MRPL44 Missense_Mutation p.A174V 0.19 deleterious(0.01) benign(0.444) TCGA-FW-A3R5-06 2 224824624 224824624 C T MRPL44 Missense_Mutation p.P185S 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 225265794 225265794 C T FAM124B Nonsense_Mutation p.W231* 0.22 TCGA-FW-A3R5-06 2 225365136 225365136 G A CUL3 Silent p.A518A 0.29 TCGA-FW-A3R5-06 2 225639752 225639752 G A DOCK10 Silent p.I1961I 0.25 TCGA-FW-A3R5-06 2 225688361 225688361 G A DOCK10 Missense_Mutation p.P1014S 0.25 tolerated(0.76) benign(0) TCGA-FW-A3R5-06 2 225750837 225750837 G A DOCK10 Silent p.S185S 0.09 TCGA-FW-A3R5-06 2 226446683 226446683 G A NYAP2 Missense_Mutation p.D184N 0.07 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 2 226446723 226446723 G A NYAP2 Missense_Mutation p.R197Q 0.26 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 2 226447223 226447223 C T NYAP2 Missense_Mutation p.P364S 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 226447371 226447371 C T NYAP2 Missense_Mutation p.S413L 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 2 226447461 226447461 G A NYAP2 Missense_Mutation p.G443E 0.35 deleterious(0.01) benign(0.137) TCGA-FW-A3R5-06 2 226447684 226447684 C T NYAP2 Silent p.L517L 0.30 TCGA-FW-A3R5-06 2 226491723 226491723 C T NYAP2 Missense_Mutation p.S570F 0.29 deleterious(0.01) possibly_damaging(0.776) TCGA-FW-A3R5-06 2 227731973 227731973 C T RHBDD1 Missense_Mutation p.P169S 0.24 tolerated(0.07) benign(0.411) TCGA-FW-A3R5-06 2 227886796 227886796 C T COL4A4 Missense_Mutation p.G1395E 0.25 unknown(0) TCGA-FW-A3R5-06 2 227886797 227886797 C T COL4A4 Missense_Mutation p.G1395R 0.24 unknown(0) TCGA-FW-A3R5-06 2 227895176 227895176 C T COL4A4 Missense_Mutation p.G1319E 0.22 unknown(0) TCGA-FW-A3R5-06 2 227895207 227895207 G A COL4A4 Missense_Mutation p.P1309S 0.22 unknown(0) TCGA-FW-A3R5-06 2 227898144 227898144 C T COL4A4 Missense_Mutation p.G1187R 0.30 unknown(0) TCGA-FW-A3R5-06 2 227907816 227907816 G A COL4A4 Missense_Mutation p.S1125F 0.34 unknown(0) TCGA-FW-A3R5-06 2 227915826 227915826 C T COL4A4 Missense_Mutation p.R1006K 0.21 unknown(0) TCGA-FW-A3R5-06 2 227919409 227919409 C T COL4A4 Missense_Mutation p.G921R 0.25 unknown(0) TCGA-FW-A3R5-06 2 227919421 227919421 G A COL4A4 Missense_Mutation p.P917S 0.24 unknown(0) TCGA-FW-A3R5-06 2 227922301 227922301 G A COL4A4 Missense_Mutation p.P800L 0.26 possibly_damaging(0.908) TCGA-FW-A3R5-06 2 227924928 227924928 G A COL4A4 Silent p.A696A 0.31 TCGA-FW-A3R5-06 2 227942792 227942792 C T COL4A4 Missense_Mutation p.G602E 0.38 probably_damaging(0.972) TCGA-FW-A3R5-06 2 227946862 227946862 C T COL4A4 Silent p.A555A 0.49 TCGA-FW-A3R5-06 2 227967505 227967505 C T COL4A4 Silent p.R310R 0.29 TCGA-FW-A3R5-06 2 227983423 227983423 C T COL4A4 Missense_Mutation p.G143S 0.26 probably_damaging(1) TCGA-FW-A3R5-06 2 227983445 227983445 T C COL4A4 Silent p.K135K 0.29 TCGA-FW-A3R5-06 2 227985818 227985818 C T COL4A4 Missense_Mutation p.G80E 0.19 probably_damaging(1) TCGA-FW-A3R5-06 2 228137704 228137704 G A COL4A3 Missense_Mutation p.D600N 0.28 unknown(0) TCGA-FW-A3R5-06 2 228153893 228153893 G A COL4A3 Missense_Mutation p.G970E 0.22 unknown(0) TCGA-FW-A3R5-06 2 228155603 228155603 G A COL4A3 Splice_Site p.X1070_splice 0.15 TCGA-FW-A3R5-06 2 228175562 228175562 G A COL4A3 Missense_Mutation p.R1609Q 0.18 unknown(0) TCGA-FW-A3R5-06 2 228235632 228235632 C T TM4SF20 Missense_Mutation p.G83E 0.29 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 2 228243815 228243815 C T TM4SF20 Missense_Mutation p.G57E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 228399602 228399602 C T AGFG1 Missense_Mutation p.P380S 0.25 tolerated(0.27) benign(0.005) TCGA-FW-A3R5-06 2 228754612 228754612 G A DAW1 Missense_Mutation p.E52K 0.28 deleterious(0) possibly_damaging(0.682) TCGA-FW-A3R5-06 2 228786229 228786229 G A DAW1 Missense_Mutation p.E389K 0.25 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 2 228846428 228846428 C T SPHKAP 3'UTR 0.31 TCGA-FW-A3R5-06 2 228860316 228860316 C T SPHKAP Missense_Mutation p.E1515K 0.36 deleterious(0) possibly_damaging(0.881) TCGA-FW-A3R5-06 2 228881311 228881311 G A SPHKAP Missense_Mutation p.S1420L 0.32 tolerated(0.14) benign(0.013) TCGA-FW-A3R5-06 2 228881789 228881789 C T SPHKAP Missense_Mutation p.D1261N 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 228882050 228882050 G A SPHKAP Missense_Mutation p.L1174F 0.10 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 2 228882168 228882168 C T SPHKAP Silent p.V1134V 0.30 TCGA-FW-A3R5-06 2 228882500 228882500 C T SPHKAP Missense_Mutation p.E1024K 0.20 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 228882732 228882732 C T SPHKAP Silent p.A946A 0.12 TCGA-FW-A3R5-06 2 228883024 228883024 C T SPHKAP Missense_Mutation p.S849N 0.32 tolerated(0.54) benign(0.001) TCGA-FW-A3R5-06 2 228883252 228883252 G A SPHKAP Missense_Mutation p.P773L 0.28 tolerated(0.12) benign(0.008) TCGA-FW-A3R5-06 2 228883384 228883384 C T SPHKAP Missense_Mutation p.R729Q 0.22 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 2 228884217 228884217 G A SPHKAP Silent p.V451V 0.26 TCGA-FW-A3R5-06 2 228884347 228884347 G A SPHKAP Missense_Mutation p.S408F 0.21 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 2 228884482 228884482 C T SPHKAP Missense_Mutation p.R363K 0.25 tolerated(0.7) benign(0.002) TCGA-FW-A3R5-06 2 228884549 228884549 G A SPHKAP Missense_Mutation p.P341S 0.31 tolerated(0.64) benign(0.027) TCGA-FW-A3R5-06 2 228886491 228886491 C T SPHKAP Silent p.E211E 0.23 TCGA-FW-A3R5-06 2 229890307 229890307 C T PID1 3'UTR 0.22 TCGA-FW-A3R5-06 2 229890592 229890592 G A PID1 Missense_Mutation p.T168I 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 2 229890618 229890618 G A PID1 Silent p.F159F 0.28 TCGA-FW-A3R5-06 2 230231657 230231657 C T DNER Silent p.E678E 0.30 TCGA-FW-A3R5-06 2 230252982 230252982 G A DNER Silent p.I618I 0.25 TCGA-FW-A3R5-06 2 230272018 230272018 G A DNER Silent p.S551S 0.30 TCGA-FW-A3R5-06 2 230456299 230456299 C T DNER Silent p.V194V 0.28 TCGA-FW-A3R5-06 2 230902178 230902178 C T SLC16A14 Missense_Mutation p.G484E 0.28 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 2 230902211 230902211 G A SLC16A14 Missense_Mutation p.S473F 0.28 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 2 230911020 230911020 C T SLC16A14 Silent p.R274R 0.32 TCGA-FW-A3R5-06 2 230911199 230911199 C T SLC16A14 Missense_Mutation p.G215S 0.35 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 2 231035380 231035380 C T SP110 Missense_Mutation p.R662Q 0.41 tolerated(0.29) benign(0.417) TCGA-FW-A3R5-06 2 231077635 231077635 G A SP110 Missense_Mutation p.P142S 0.21 tolerated(0.21) possibly_damaging(0.803) TCGA-FW-A3R5-06 2 231090451 231090451 C T SP140 5'UTR 0.30 TCGA-FW-A3R5-06 2 231090532 231090532 G A SP140 5'UTR 0.33 TCGA-FW-A3R5-06 2 231109737 231109737 C T SP140 Silent p.L202L 0.27 TCGA-FW-A3R5-06 2 231112699 231112699 G A SP140 Missense_Mutation p.E271K 0.15 tolerated(0.46) benign(0.004) TCGA-FW-A3R5-06 2 231115757 231115757 C T SP140 Silent p.S346S 0.31 TCGA-FW-A3R5-06 2 231120199 231120199 G A SP140 Missense_Mutation p.G398R 0.23 tolerated(0.64) possibly_damaging(0.773) TCGA-FW-A3R5-06 2 231150513 231150513 G A SP140 Silent p.A537A 0.09 TCGA-FW-A3R5-06 2 231175883 231175883 C T SP140 Silent p.L766L 0.18 TCGA-FW-A3R5-06 2 231177426 231177426 C T SP140 3'UTR 0.24 TCGA-FW-A3R5-06 2 231191972 231191972 C T SP140L 5'UTR 0.20 TCGA-FW-A3R5-06 2 231222521 231222521 C T SP140L Silent p.L37L 0.22 TCGA-FW-A3R5-06 2 231249970 231249970 G A SP140L Silent p.S245S 0.15 TCGA-FW-A3R5-06 2 231264925 231264925 G A SP140L Silent p.E427E 0.27 TCGA-FW-A3R5-06 2 231265714 231265714 G A SP140L Missense_Mutation p.G453E 0.15 tolerated(1) possibly_damaging(0.747) TCGA-FW-A3R5-06 2 231267748 231267748 C T SP140L 3'UTR 0.45 TCGA-FW-A3R5-06 2 231314955 231314955 C T SP100 Missense_Mutation p.P269S 0.25 tolerated(0.09) possibly_damaging(0.803) TCGA-FW-A3R5-06 2 231774589 231774589 G A GPR55 3'UTR 0.35 TCGA-FW-A3R5-06 2 231775112 231775112 C T GPR55 Missense_Mutation p.G189D 0.20 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 231775413 231775413 G A GPR55 Missense_Mutation p.P89S 0.28 tolerated(0.16) benign(0.006) TCGA-FW-A3R5-06 2 231775414 231775414 G A GPR55 Silent p.S88S 0.28 TCGA-FW-A3R5-06 2 231775774 231775774 C T GPR55 5'UTR 0.29 TCGA-FW-A3R5-06 2 232127033 232127033 C T ARMC9 Silent p.S347S 0.21 TCGA-FW-A3R5-06 2 232263400 232263400 C T B3GNT7 Missense_Mutation p.P324S 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 232320840 232320840 G A NCL Silent p.S571S 0.24 TCGA-FW-A3R5-06 2 232393203 232393203 G A NMUR1 Missense_Mutation p.H177Y 0.31 deleterious(0) possibly_damaging(0.88) TCGA-FW-A3R5-06 2 232597562 232597562 G A PDE6D 3'UTR 0.30 TCGA-FW-A3R5-06 2 232672238 232672238 C T COPS7B Silent p.S226S 0.25 TCGA-FW-A3R5-06 2 233243414 233243414 G A ALPP 5'UTR 0.14 TCGA-FW-A3R5-06 2 233244485 233244485 G A ALPP Missense_Mutation p.G166R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 233245010 233245010 G A ALPP Missense_Mutation p.E258K 0.25 tolerated(0.2) benign(0.034) TCGA-FW-A3R5-06 2 233245355 233245355 G A ALPP Missense_Mutation p.M296I 0.14 deleterious(0) possibly_damaging(0.683) TCGA-FW-A3R5-06 2 233272030 233272030 C T ALPPL2 Silent p.I73I 0.33 TCGA-FW-A3R5-06 2 233273254 233273254 C T ALPPL2 Missense_Mutation p.S276F 0.26 deleterious(0.01) probably_damaging(0.95) TCGA-FW-A3R5-06 2 233273436 233273436 G A ALPPL2 Missense_Mutation p.M293I 0.20 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 2 233274432 233274432 C T ALPPL2 Silent p.F483F 0.34 TCGA-FW-A3R5-06 2 233322985 233322985 G A ALPI Silent p.A350A 0.29 TCGA-FW-A3R5-06 2 233344860 233344860 G A ECEL1 3'UTR 0.33 TCGA-FW-A3R5-06 2 233346338 233346338 C T ECEL1 Missense_Mutation p.G623S 0.32 tolerated(0.54) possibly_damaging(0.879) TCGA-FW-A3R5-06 2 233348889 233348889 C T ECEL1 Missense_Mutation p.S410N 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-FW-A3R5-06 2 233393629 233393629 G T CHRND Missense_Mutation p.E189D 0.13 tolerated(0.68) benign(0.001) TCGA-FW-A3R5-06 2 233394685 233394685 G A CHRND Missense_Mutation p.R219K 0.15 tolerated(0.67) benign(0.012) TCGA-FW-A3R5-06 2 233394686 233394686 G A CHRND Silent p.R219R 0.15 TCGA-FW-A3R5-06 2 233410375 233410375 G A CHRNG Silent p.P501P 0.09 TCGA-FW-A3R5-06 2 233410387 233410387 C A CHRNG Missense_Mutation p.F505L 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 233546349 233546349 G A EFHD1 Missense_Mutation p.D214N 0.36 tolerated(0.06) benign(0.164) TCGA-FW-A3R5-06 2 233655986 233655986 C T GIGYF2 Missense_Mutation p.P392L 0.31 benign(0.017) TCGA-FW-A3R5-06 2 233704569 233704569 C T GIGYF2 Missense_Mutation p.S947F 0.18 unknown(0) TCGA-FW-A3R5-06 2 233752796 233752796 C T NGEF Missense_Mutation p.E432K 0.31 tolerated(0.05) probably_damaging(1) TCGA-FW-A3R5-06 2 233898898 233898898 G A NEU2 Missense_Mutation p.D92N 0.36 deleterious(0.02) probably_damaging(0.976) TCGA-FW-A3R5-06 2 233899198 233899198 C T NEU2 Missense_Mutation p.P192S 0.35 deleterious(0.03) possibly_damaging(0.818) TCGA-FW-A3R5-06 2 233899665 233899665 C T NEU2 Silent p.S347S 0.30 TCGA-FW-A3R5-06 2 233899666 233899666 C T NEU2 Missense_Mutation p.P348S 0.30 tolerated(0.17) probably_damaging(0.954) TCGA-FW-A3R5-06 2 233925273 233925273 C T INPP5D Missense_Mutation p.L29F 0.28 deleterious(0.01) benign(0.215) TCGA-FW-A3R5-06 2 233986949 233986949 G A INPP5D Missense_Mutation p.D111N 0.32 deleterious(0.02) benign(0.417) TCGA-FW-A3R5-06 2 234072440 234072440 C T INPP5D Missense_Mutation p.P431L 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 234094533 234094533 G A INPP5D Missense_Mutation p.G762R 0.19 deleterious(0.03) probably_damaging(0.991) TCGA-FW-A3R5-06 2 234106900 234106900 C T INPP5D Silent p.S939S 0.26 TCGA-FW-A3R5-06 2 234112908 234112908 G A INPP5D Missense_Mutation p.E1026K 0.22 deleterious(0.01) possibly_damaging(0.883) TCGA-FW-A3R5-06 2 234112995 234112995 G A INPP5D Missense_Mutation p.E1055K 0.30 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-FW-A3R5-06 2 234113017 234113017 C T INPP5D Missense_Mutation p.P1062L 0.20 deleterious_low_confidence(0.01) benign(0.059) TCGA-FW-A3R5-06 2 234200864 234200864 C T ATG16L1 Silent p.S507S 0.20 TCGA-FW-A3R5-06 2 234200865 234200865 C T ATG16L1 Missense_Mutation p.R508C 0.20 deleterious(0) possibly_damaging(0.73) TCGA-FW-A3R5-06 2 234357778 234357778 C T DGKD Silent p.S548S 0.29 TCGA-FW-A3R5-06 2 234368445 234368445 C T DGKD Missense_Mutation p.P913S 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 234442224 234442224 G A USP40 Nonsense_Mutation p.Q469* 0.28 TCGA-FW-A3R5-06 2 234460143 234460143 G A USP40 Missense_Mutation p.P251L 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 234526842 234526842 C T UGT1A8 Silent p.L163L 0.19 TCGA-FW-A3R5-06 2 234527192 234527192 G A UGT1A8 Missense_Mutation p.G280E 0.25 tolerated(0.23) benign(0.363) TCGA-FW-A3R5-06 2 234545613 234545613 C T UGT1A10 Missense_Mutation p.P149S 0.33 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 2 234545895 234545895 G A UGT1A10 Missense_Mutation p.D243N 0.08 deleterious(0.01) possibly_damaging(0.777) TCGA-FW-A3R5-06 2 234581070 234581070 C T UGT1A9 Missense_Mutation p.P164S 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 234581261 234581261 C T UGT1A9 Silent p.A227A 0.16 TCGA-FW-A3R5-06 2 234581300 234581300 G A UGT1A9 Silent p.T240T 0.27 TCGA-FW-A3R5-06 2 234590866 234590866 G A UGT1A7 Missense_Mutation p.D95N 0.30 tolerated(0.35) benign(0.005) TCGA-FW-A3R5-06 2 234601708 234601708 C T UGT1A6 Missense_Mutation p.L20F 0.21 tolerated(0.17) benign(0.247) TCGA-FW-A3R5-06 2 234621899 234621899 G A UGT1A5 Missense_Mutation p.E88K 0.31 tolerated(0.11) benign(0.103) TCGA-FW-A3R5-06 2 234622025 234622025 G A UGT1A5 Missense_Mutation p.E130K 0.20 tolerated(0.45) benign(0.008) TCGA-FW-A3R5-06 2 234638207 234638207 C T UGT1A3 Silent p.S145S 0.27 TCGA-FW-A3R5-06 2 234638545 234638545 G A UGT1A3 Missense_Mutation p.R258Q 0.30 deleterious(0.01) possibly_damaging(0.844) TCGA-FW-A3R5-06 2 234652443 234652443 C T UGT1A10 Intron 0.30 TCGA-FW-A3R5-06 2 234668928 234668928 G A UGT1A1 5'UTR 0.18 TCGA-FW-A3R5-06 2 234669197 234669197 G A UGT1A8 Intron 0.27 TCGA-FW-A3R5-06 2 234669549 234669549 T A UGT1A8 Intron 0.22 TCGA-FW-A3R5-06 2 234681215 234681215 G A UGT1A4 3'UTR 0.43 TCGA-FW-A3R5-06 2 234749363 234749363 G A HJURP Missense_Mutation p.P688L 0.22 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 234749364 234749364 G A HJURP Missense_Mutation p.P688S 0.22 tolerated(0.17) probably_damaging(0.992) TCGA-FW-A3R5-06 2 234750088 234750088 G A HJURP Silent p.C446C 0.22 TCGA-FW-A3R5-06 2 234775285 234775285 G A MSL3P1 RNA 0.12 TCGA-FW-A3R5-06 2 234845968 234845968 C T TRPM8 Intron 0.18 TCGA-FW-A3R5-06 2 234851403 234851403 G A TRPM8 Intron 0.25 TCGA-FW-A3R5-06 2 234855777 234855777 G A TRPM8 Missense_Mutation p.G307E 0.28 tolerated(1) benign(0.133) TCGA-FW-A3R5-06 2 234858655 234858655 C T TRPM8 Silent p.I335I 0.30 TCGA-FW-A3R5-06 2 234862561 234862561 C T TRPM8 Missense_Mutation p.L381F 0.26 deleterious(0.03) benign(0.011) TCGA-FW-A3R5-06 2 234873392 234873392 C T TRPM8 Missense_Mutation p.R624W 0.21 deleterious(0) possibly_damaging(0.855) TCGA-FW-A3R5-06 2 234878915 234878915 C T TRPM8 Missense_Mutation p.P734S 0.27 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 234878916 234878916 C T TRPM8 Missense_Mutation p.P734L 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 234878920 234878920 C T TRPM8 Silent p.F735F 0.32 TCGA-FW-A3R5-06 2 234915531 234915531 G A TRPM8 Nonsense_Mutation p.W1055* 0.28 TCGA-FW-A3R5-06 2 234915595 234915595 G A TRPM8 Missense_Mutation p.E1077K 0.09 tolerated(0.41) benign(0.296) TCGA-FW-A3R5-06 2 234959412 234959412 C T SPP2 5'UTR 0.28 TCGA-FW-A3R5-06 2 234975199 234975199 G A SPP2 Missense_Mutation p.G156E 0.28 tolerated(0.35) benign(0.393) TCGA-FW-A3R5-06 2 235949554 235949554 C T SH3BP4 Silent p.L47L 0.27 TCGA-FW-A3R5-06 2 236653459 236653459 C T AGAP1 Missense_Mutation p.P172S 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 236949460 236949460 C T AGAP1 Silent p.S622S 0.29 TCGA-FW-A3R5-06 2 237246931 237246931 G A IQCA1 Missense_Mutation p.P684L 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 237374332 237374332 C T IQCA1 Missense_Mutation p.E248K 0.18 tolerated(0.55) benign(0.002) TCGA-FW-A3R5-06 2 237405806 237405806 G A IQCA1 Silent p.P112P 0.59 TCGA-FW-A3R5-06 2 237489255 237489255 C T ACKR3 Silent p.F49F 0.29 TCGA-FW-A3R5-06 2 237489273 237489273 C T ACKR3 Silent p.F55F 0.15 TCGA-FW-A3R5-06 2 237489440 237489440 C T ACKR3 Missense_Mutation p.P111L 0.20 tolerated(0.62) benign(0.201) TCGA-FW-A3R5-06 2 237489685 237489685 G A ACKR3 Missense_Mutation p.E193K 0.21 tolerated(0.39) possibly_damaging(0.719) TCGA-FW-A3R5-06 2 237489689 237489689 C T ACKR3 Missense_Mutation p.T194I 0.22 tolerated(0.22) possibly_damaging(0.596) TCGA-FW-A3R5-06 2 238249231 238249231 C T COL6A3 Silent p.R2776R 0.29 TCGA-FW-A3R5-06 2 238256999 238256999 C T COL6A3 Missense_Mutation p.G2320E 0.24 unknown(0) TCGA-FW-A3R5-06 2 238270463 238270463 G A COL6A3 Silent p.A2025A 0.22 TCGA-FW-A3R5-06 2 238272008 238272008 C T COL6A3 Missense_Mutation p.R1984Q 0.19 benign(0.044) TCGA-FW-A3R5-06 2 238277483 238277483 G A COL6A3 Silent p.P1541P 0.30 TCGA-FW-A3R5-06 2 238277484 238277484 G A COL6A3 Missense_Mutation p.P1541L 0.29 probably_damaging(1) TCGA-FW-A3R5-06 2 238277716 238277716 G A COL6A3 Nonsense_Mutation p.R1464* 0.35 TCGA-FW-A3R5-06 2 238287447 238287447 C T COL6A3 Missense_Mutation p.G777R 0.22 probably_damaging(1) TCGA-FW-A3R5-06 2 238287555 238287555 C T COL6A3 Missense_Mutation p.E741K 0.16 possibly_damaging(0.826) TCGA-FW-A3R5-06 2 238296801 238296801 G A COL6A3 Missense_Mutation p.L246F 0.20 probably_damaging(1) TCGA-FW-A3R5-06 2 238303556 238303556 C T COL6A3 Missense_Mutation p.S128N 0.35 benign(0.017) TCGA-FW-A3R5-06 2 238494746 238494746 G A RAB17 Missense_Mutation p.R18C 0.33 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 2 238722307 238722307 G A RBM44 Missense_Mutation p.G20R 0.26 tolerated(0.15) possibly_damaging(0.582) TCGA-FW-A3R5-06 2 238725807 238725807 C T RBM44 Missense_Mutation p.S83L 0.30 tolerated(0.07) benign(0.407) TCGA-FW-A3R5-06 2 238726810 238726810 C T RBM44 Silent p.I417I 0.30 TCGA-FW-A3R5-06 2 238785863 238785863 C T RAMP1 Intron 0.10 TCGA-FW-A3R5-06 2 238820283 238820283 G A RAMP1 Missense_Mutation p.R102K 0.29 tolerated(0.41) benign(0.015) TCGA-FW-A3R5-06 2 238944540 238944540 C T UBE2F Missense_Mutation p.P156S 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 239010604 239010604 C T ESPNL Missense_Mutation p.S106F 0.33 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 2 239016599 239016599 G A ESPNL Silent p.E280E 0.20 TCGA-FW-A3R5-06 2 239025621 239025621 G A ESPNL Silent p.A311A 0.32 TCGA-FW-A3R5-06 2 239036373 239036373 G A ESPNL Missense_Mutation p.E405K 0.30 tolerated(0.82) benign(0) TCGA-FW-A3R5-06 2 239161976 239161976 G A PER2 Silent p.F896F 0.37 TCGA-FW-A3R5-06 2 239162337 239162337 G A PER2 Missense_Mutation p.P776L 0.46 tolerated(0.06) possibly_damaging(0.663) TCGA-FW-A3R5-06 2 239169470 239169470 G A PER2 Missense_Mutation p.A514V 0.27 tolerated(0.29) benign(0.001) TCGA-FW-A3R5-06 2 239181733 239181733 G A PER2 Missense_Mutation p.S183F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 239242627 239242627 G A TRAF3IP1 Silent p.K338K 0.16 TCGA-FW-A3R5-06 2 239990214 239990214 G A HDAC4 Missense_Mutation p.P942L 0.26 deleterious(0.02) benign(0.254) TCGA-FW-A3R5-06 2 239990240 239990240 G A HDAC4 Silent p.F933F 0.10 TCGA-FW-A3R5-06 2 240016749 240016749 G A HDAC4 Missense_Mutation p.S741L 0.24 tolerated(0.31) benign(0.121) TCGA-FW-A3R5-06 2 240969788 240969788 G A OR6B2 Missense_Mutation p.A20V 0.09 tolerated(0.54) benign(0.003) TCGA-FW-A3R5-06 2 241069402 241069402 G A MYEOV2 Missense_Mutation p.P103S 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 2 241078664 241078664 C T OTOS Missense_Mutation p.D65N 0.27 deleterious(0) possibly_damaging(0.642) TCGA-FW-A3R5-06 2 241401948 241401948 C T GPC1 Silent p.S222S 0.26 TCGA-FW-A3R5-06 2 241405670 241405670 T A GPC1 Missense_Mutation p.F547Y 0.08 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 241468740 241468740 G A ANKMY1 Missense_Mutation p.L134F 0.25 deleterious(0.02) benign(0.076) TCGA-FW-A3R5-06 2 241494457 241494457 G A ANKMY1 5'UTR 0.41 TCGA-FW-A3R5-06 2 241528843 241528843 C T CAPN10 Silent p.F75F 0.29 TCGA-FW-A3R5-06 2 241534449 241534449 C T CAPN10 Missense_Mutation p.L336F 0.27 deleterious(0.01) probably_damaging(0.927) TCGA-FW-A3R5-06 2 241535813 241535813 C T CAPN10 Silent p.D452D 0.12 TCGA-FW-A3R5-06 2 241555917 241555917 C T GPR35 5'UTR 0.35 TCGA-FW-A3R5-06 2 241556420 241556420 C T GPR35 Intron 0.32 TCGA-FW-A3R5-06 2 241569435 241569435 C T GPR35 Silent p.G53G 0.30 TCGA-FW-A3R5-06 2 241569451 241569451 G A GPR35 Missense_Mutation p.G59S 0.23 tolerated(0.5) benign(0.28) TCGA-FW-A3R5-06 2 241569725 241569725 G A GPR35 Missense_Mutation p.R150Q 0.24 tolerated(0.13) benign(0.078) TCGA-FW-A3R5-06 2 241569726 241569726 G A GPR35 Silent p.R150R 0.25 TCGA-FW-A3R5-06 2 241569894 241569894 C T GPR35 Silent p.F206F 0.18 TCGA-FW-A3R5-06 2 241622226 241622226 A T AQP12B Missense_Mutation p.F10Y 0.27 tolerated(0.28) probably_damaging(0.999) TCGA-FW-A3R5-06 2 241631526 241631526 G A AQP12A Silent p.G53G 0.16 TCGA-FW-A3R5-06 2 241659339 241659339 G A KIF1A Missense_Mutation p.P1625S 0.21 tolerated(0.17) benign(0.004) TCGA-FW-A3R5-06 2 241689931 241689931 G A KIF1A Silent p.P964P 0.14 TCGA-FW-A3R5-06 2 241700753 241700753 A C KIF1A Missense_Mutation p.F720V 0.31 deleterious(0.01) benign(0.138) TCGA-FW-A3R5-06 2 241710444 241710444 G A KIF1A Missense_Mutation p.L429F 0.34 deleterious(0.01) benign(0.439) TCGA-FW-A3R5-06 2 241727533 241727533 C T KIF1A Missense_Mutation p.G100S 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 2 241808421 241808421 G A AGXT Missense_Mutation p.G47R 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 241812411 241812411 C T AGXT Silent p.L180L 0.17 TCGA-FW-A3R5-06 2 241815373 241815373 C T AGXT Silent p.V266V 0.08 TCGA-FW-A3R5-06 2 241827796 241827796 G A C2orf54 Silent p.I388I 0.50 TCGA-FW-A3R5-06 2 241831098 241831098 G A C2orf54 Silent p.F199F 0.34 TCGA-FW-A3R5-06 2 241835039 241835039 C T C2orf54 Missense_Mutation p.E126K 0.14 tolerated(0.52) benign(0.021) TCGA-FW-A3R5-06 2 241976665 241976665 G A SNED1 Missense_Mutation p.E314K 0.30 deleterious(0.03) probably_damaging(0.979) TCGA-FW-A3R5-06 2 241987827 241987827 G A SNED1 Missense_Mutation p.E457K 0.17 tolerated(0.51) possibly_damaging(0.61) TCGA-FW-A3R5-06 2 242003063 242003063 G A SNED1 Missense_Mutation p.G811R 0.17 tolerated(0.07) benign(0.35) TCGA-FW-A3R5-06 2 242039285 242039285 G A MTERFD2 Missense_Mutation p.P16S 0.28 tolerated(0.07) benign(0.162) TCGA-FW-A3R5-06 2 242054730 242054730 G A PASK Silent p.S1057S 0.38 TCGA-FW-A3R5-06 2 242082349 242082349 G A PASK Silent p.T33T 0.11 TCGA-FW-A3R5-06 2 242129552 242129552 G A ANO7 Missense_Mutation p.R79K 0.44 tolerated(0.92) benign(0.006) TCGA-FW-A3R5-06 2 242151573 242151573 C T ANO7 Silent p.F596F 0.34 TCGA-FW-A3R5-06 2 242151616 242151616 G A ANO7 Missense_Mutation p.G611S 0.26 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 2 242285635 242285635 C T SEPT2 Silent p.F299F 0.14 TCGA-FW-A3R5-06 2 24245745 24245745 G A MFSD2B Silent p.G344G 0.16 TCGA-FW-A3R5-06 2 242573389 242573389 G A THAP4 Silent p.T61T 0.33 TCGA-FW-A3R5-06 2 242598552 242598552 C T ATG4B Missense_Mutation p.S163F 0.34 deleterious(0) benign(0.365) TCGA-FW-A3R5-06 2 242716350 242716350 C T GAL3ST2 5'UTR 0.41 TCGA-FW-A3R5-06 2 242741358 242741358 C T GAL3ST2 Silent p.Y94Y 0.32 TCGA-FW-A3R5-06 2 242742894 242742894 C T GAL3ST2 Silent p.F170F 0.27 TCGA-FW-A3R5-06 2 242755720 242755720 C T NEU4 Silent p.F26F 0.15 TCGA-FW-A3R5-06 2 242755875 242755875 C T NEU4 Missense_Mutation p.S78F 0.33 tolerated(0.65) benign(0.025) TCGA-FW-A3R5-06 2 242755876 242755876 C T NEU4 Silent p.S78S 0.33 TCGA-FW-A3R5-06 2 242794827 242794827 G A PDCD1 Silent p.L128L 0.26 TCGA-FW-A3R5-06 2 242812010 242812010 G A CXXC11 Silent p.L34L 0.44 TCGA-FW-A3R5-06 2 242814347 242814347 G A CXXC11 Missense_Mutation p.D214N 0.37 tolerated(0.13) benign(0.135) TCGA-FW-A3R5-06 2 242814477 242814477 G A CXXC11 Missense_Mutation p.G257E 0.32 tolerated(0.47) benign(0.009) TCGA-FW-A3R5-06 2 242814637 242814637 C T CXXC11 Silent p.S310S 0.28 TCGA-FW-A3R5-06 2 242815135 242815135 C T CXXC11 Silent p.F476F 0.16 TCGA-FW-A3R5-06 2 24930354 24930354 C T NCOA1 Missense_Mutation p.S672L 0.24 tolerated(0.44) benign(0.069) TCGA-FW-A3R5-06 2 24974859 24974859 C T NCOA1 Missense_Mutation p.P1239S 0.34 tolerated(0.27) benign(0.004) TCGA-FW-A3R5-06 2 25016299 25016299 C T CENPO 5'UTR 0.33 TCGA-FW-A3R5-06 2 25057715 25057715 C T ADCY3 Missense_Mutation p.E585K 0.21 tolerated(0.21) possibly_damaging(0.592) TCGA-FW-A3R5-06 2 25057792 25057792 G A ADCY3 Missense_Mutation p.S559L 0.26 tolerated(0.12) benign(0.005) TCGA-FW-A3R5-06 2 25141452 25141452 G A ADCY3 Silent p.T135T 0.07 TCGA-FW-A3R5-06 2 25384054 25384054 C T POMC Missense_Mutation p.D234N 0.09 deleterious(0.04) possibly_damaging(0.884) TCGA-FW-A3R5-06 2 25384191 25384191 C T POMC Missense_Mutation p.G188E 0.43 tolerated(0.28) benign(0.075) TCGA-FW-A3R5-06 2 25678335 25678335 G A DTNB Missense_Mutation p.H370Y 0.35 deleterious(0.01) benign(0) TCGA-FW-A3R5-06 2 25964810 25964810 A T ASXL2 3'UTR 0.32 TCGA-FW-A3R5-06 2 25965265 25965265 G A ASXL2 Missense_Mutation p.P1314L 0.36 deleterious(0.05) probably_damaging(0.987) TCGA-FW-A3R5-06 2 25965266 25965266 G A ASXL2 Missense_Mutation p.P1314S 0.36 deleterious(0.04) possibly_damaging(0.742) TCGA-FW-A3R5-06 2 25994397 25994397 G A ASXL2 Missense_Mutation p.S139F 0.24 deleterious(0) possibly_damaging(0.902) TCGA-FW-A3R5-06 2 26203890 26203890 G A KIF3C Silent p.A299A 0.20 TCGA-FW-A3R5-06 2 26204076 26204076 G A KIF3C Silent p.I237I 0.36 TCGA-FW-A3R5-06 2 26486319 26486319 C T HADHB Missense_Mutation p.R61C 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 26537451 26537451 C T GPR113 Nonsense_Mutation p.W321* 0.25 TCGA-FW-A3R5-06 2 26607905 26607905 C T EPT1 Silent p.F270F 0.21 TCGA-FW-A3R5-06 2 26673526 26673526 C T DRC1 Missense_Mutation p.H556Y 0.20 tolerated(0.15) benign(0.012) TCGA-FW-A3R5-06 2 26676280 26676280 G A DRC1 Missense_Mutation p.M594I 0.28 tolerated(0.22) benign(0) TCGA-FW-A3R5-06 2 26676281 26676281 G A DRC1 Missense_Mutation p.E595K 0.27 tolerated(0.36) benign(0.02) TCGA-FW-A3R5-06 2 26697485 26697485 C T OTOF Missense_Mutation p.E1062K 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 2 26739344 26739344 C T OTOF Missense_Mutation p.G151R 0.18 tolerated(0.36) possibly_damaging(0.721) TCGA-FW-A3R5-06 2 26806663 26806663 C T CIB4 Silent p.T144T 0.16 TCGA-FW-A3R5-06 2 26863423 26863423 G A CIB4 Silent p.L23L 0.17 TCGA-FW-A3R5-06 2 27121488 27121488 G A DPYSL5 Missense_Mutation p.E41K 0.25 deleterious(0.03) benign(0.165) TCGA-FW-A3R5-06 2 27147881 27147881 C A DPYSL5 Missense_Mutation p.L130I 0.25 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 27147884 27147884 C T DPYSL5 Missense_Mutation p.H131Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 27151149 27151149 G A DPYSL5 Silent p.G209G 0.23 TCGA-FW-A3R5-06 2 27151188 27151188 G A DPYSL5 Silent p.E222E 0.20 TCGA-FW-A3R5-06 2 27167606 27167606 G A DPYSL5 Missense_Mutation p.G508E 0.24 tolerated(0.2) possibly_damaging(0.532) TCGA-FW-A3R5-06 2 27167664 27167664 C T DPYSL5 Silent p.D527D 0.29 TCGA-FW-A3R5-06 2 27260509 27260509 C T TMEM214 Missense_Mutation p.T364I 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 2 27302010 27302010 C T EMILIN1 Missense_Mutation p.P26L 0.32 possibly_damaging(0.543) TCGA-FW-A3R5-06 2 27322557 27322557 G A KHK Missense_Mutation p.R279K 0.31 tolerated(0.53) benign(0.002) TCGA-FW-A3R5-06 2 27324423 27324423 C T CGREF1 Missense_Mutation p.E226K 0.32 tolerated(0.96) benign(0.022) TCGA-FW-A3R5-06 2 27354630 27354630 G A PREB Missense_Mutation p.R357C 0.29 tolerated(0.07) benign(0.006) TCGA-FW-A3R5-06 2 27360043 27360043 G A C2orf53 Silent p.V385V 0.25 TCGA-FW-A3R5-06 2 27360233 27360233 C T C2orf53 Missense_Mutation p.G322E 0.24 tolerated(0.21) benign(0.067) TCGA-FW-A3R5-06 2 27360240 27360240 C T C2orf53 Missense_Mutation p.E320K 0.28 tolerated(0.07) benign(0.066) TCGA-FW-A3R5-06 2 27360640 27360640 G A C2orf53 Silent p.S186S 0.25 TCGA-FW-A3R5-06 2 27360859 27360859 G T C2orf53 Silent p.P113P 0.22 TCGA-FW-A3R5-06 2 27361019 27361019 G A C2orf53 Missense_Mutation p.S60F 0.19 tolerated(0.83) benign(0.001) TCGA-FW-A3R5-06 2 27444208 27444208 C T CAD Silent p.G115G 0.34 TCGA-FW-A3R5-06 2 27455079 27455079 C T CAD Missense_Mutation p.L878F 0.22 deleterious(0.03) benign(0.058) TCGA-FW-A3R5-06 2 27456001 27456001 C T CAD Missense_Mutation p.S995F 0.33 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 2 27458130 27458130 C T CAD Silent p.F1268F 0.11 TCGA-FW-A3R5-06 2 27458232 27458232 C T CAD Silent p.A1302A 0.33 TCGA-FW-A3R5-06 2 27458257 27458257 C T CAD Missense_Mutation p.P1311S 0.11 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 27465619 27465619 C T CAD Silent p.F2118F 0.34 TCGA-FW-A3R5-06 2 27505662 27505662 G A TRIM54 Silent p.E21E 0.28 TCGA-FW-A3R5-06 2 27528496 27528496 G A TRIM54 Silent p.E260E 0.47 TCGA-FW-A3R5-06 2 27529141 27529141 G A TRIM54 Missense_Mutation p.M351I 0.24 deleterious(0) benign(0.373) TCGA-FW-A3R5-06 2 27532804 27532804 C A MPV17 Silent p.L169L 0.24 TCGA-FW-A3R5-06 2 27672907 27672907 C A IFT172 Silent p.L1336L 0.21 TCGA-FW-A3R5-06 2 27681043 27681043 G A IFT172 Silent p.I975I 0.10 TCGA-FW-A3R5-06 2 27699589 27699589 G A IFT172 Missense_Mutation p.R444C 0.32 deleterious(0.04) possibly_damaging(0.851) TCGA-FW-A3R5-06 2 27715556 27715556 C T FNDC4 Missense_Mutation p.G216R 0.19 tolerated(0.09) probably_damaging(0.979) TCGA-FW-A3R5-06 2 27716878 27716878 C T FNDC4 Missense_Mutation p.G125R 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 27720202 27720202 G A GCKR Missense_Mutation p.R51Q 0.37 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 27728588 27728588 G A GCKR Missense_Mutation p.E252K 0.28 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 277313 277313 C T ACP1 3'UTR 0.26 TCGA-FW-A3R5-06 2 27745364 27745364 G A GCKR Missense_Mutation p.S537N 0.22 tolerated(0.1) benign(0.1) TCGA-FW-A3R5-06 2 27746305 27746305 G A GCKR Silent p.%3D 0.24 TCGA-FW-A3R5-06 2 27746352 27746352 C T GCKR 3'UTR 0.26 TCGA-FW-A3R5-06 2 27800631 27800631 C T C2orf16 Nonsense_Mutation p.Q398* 0.33 TCGA-FW-A3R5-06 2 27801613 27801613 G A C2orf16 Missense_Mutation p.G725E 0.29 tolerated(0.79) benign(0.187) TCGA-FW-A3R5-06 2 27801932 27801932 G A C2orf16 Missense_Mutation p.M831I 0.26 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 2 27802502 27802502 G A C2orf16 Silent p.G1021G 0.16 TCGA-FW-A3R5-06 2 27802752 27802752 G A C2orf16 Missense_Mutation p.D1105N 0.19 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 2 27802836 27802836 C T C2orf16 Missense_Mutation p.H1133Y 0.32 deleterious(0.03) possibly_damaging(0.628) TCGA-FW-A3R5-06 2 27803388 27803388 G A C2orf16 Missense_Mutation p.E1317K 0.17 tolerated(0.08) benign(0) TCGA-FW-A3R5-06 2 27838116 27838116 C T ZNF512 Missense_Mutation p.R405C 0.20 deleterious(0) possibly_damaging(0.828) TCGA-FW-A3R5-06 2 27844028 27844028 C T ZNF512 Silent p.F468F 0.22 TCGA-FW-A3R5-06 2 27850325 27850325 C T CCDC121 Silent p.K276K 0.28 TCGA-FW-A3R5-06 2 27886539 27886539 C T SLC4A1AP 5'UTR 0.27 TCGA-FW-A3R5-06 2 27907940 27907940 C T SLC4A1AP Silent p.L638L 0.12 TCGA-FW-A3R5-06 2 27911626 27911626 C T SLC4A1AP Missense_Mutation p.P755S 0.18 tolerated(0.08) benign(0.035) TCGA-FW-A3R5-06 2 28755047 28755047 C T PLB1 Missense_Mutation p.P181S 0.17 tolerated(0.4) benign(0.009) TCGA-FW-A3R5-06 2 28755048 28755048 C T PLB1 Missense_Mutation p.P181L 0.17 deleterious(0.02) benign(0.101) TCGA-FW-A3R5-06 2 28761201 28761201 G A PLB1 Missense_Mutation p.G191S 0.28 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 28764623 28764623 C T PLB1 Missense_Mutation p.S275F 0.28 tolerated(0.06) benign(0.006) TCGA-FW-A3R5-06 2 28802509 28802509 G A PLB1 Missense_Mutation p.E501K 0.35 tolerated(0.09) benign(0.326) TCGA-FW-A3R5-06 2 28805325 28805325 G A PLB1 Silent p.R562R 0.33 TCGA-FW-A3R5-06 2 28816923 28816923 C T PLB1 Intron 0.27 TCGA-FW-A3R5-06 2 28828806 28828806 G A PLB1 Nonsense_Mutation p.W1016* 0.28 TCGA-FW-A3R5-06 2 28865888 28865888 G A PLB1 Silent p.R1446R 0.45 TCGA-FW-A3R5-06 2 29135488 29135488 C T WDR43 Missense_Mutation p.S173F 0.34 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 2 29222072 29222072 C T FAM179A Silent p.A55A 0.18 TCGA-FW-A3R5-06 2 29226487 29226487 C T FAM179A Missense_Mutation p.L257F 0.26 tolerated(0.18) benign(0.048) TCGA-FW-A3R5-06 2 29293604 29293604 G A C2orf71 Missense_Mutation p.S1175L 0.22 tolerated(0.1) possibly_damaging(0.766) TCGA-FW-A3R5-06 2 29294506 29294506 C T C2orf71 Silent p.R874R 0.26 TCGA-FW-A3R5-06 2 29294507 29294507 C T C2orf71 Missense_Mutation p.R874K 0.26 tolerated(0.45) benign(0.024) TCGA-FW-A3R5-06 2 29295045 29295045 C T C2orf71 Missense_Mutation p.E695K 0.18 tolerated(0.13) benign(0.052) TCGA-FW-A3R5-06 2 29295578 29295578 G A C2orf71 Missense_Mutation p.S517L 0.37 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 2 29296383 29296383 C T C2orf71 Missense_Mutation p.E249K 0.29 tolerated(0.41) benign(0.071) TCGA-FW-A3R5-06 2 29296878 29296878 C T C2orf71 Missense_Mutation p.G84S 0.09 tolerated(0.23) possibly_damaging(0.694) TCGA-FW-A3R5-06 2 29354130 29354130 C T CLIP4 Missense_Mutation p.S47F 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 29368177 29368177 G A CLIP4 Missense_Mutation p.G322E 0.19 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 2 29397377 29397377 G A CLIP4 Intron 0.31 TCGA-FW-A3R5-06 2 29416375 29416375 C T ALK Silent p.E1526E 0.26 TCGA-FW-A3R5-06 2 29416472 29416472 C T ALK Missense_Mutation p.G1494E 0.20 tolerated(0.06) possibly_damaging(0.856) TCGA-FW-A3R5-06 2 29416609 29416609 G A ALK Silent p.S1448S 0.28 TCGA-FW-A3R5-06 2 29416761 29416761 G A ALK Missense_Mutation p.P1398S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 2 29420417 29420417 G A ALK Missense_Mutation p.P1355L 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 29432720 29432720 G A ALK Silent p.L1256L 0.25 TCGA-FW-A3R5-06 2 29455196 29455196 C T ALK Missense_Mutation p.G869E 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 29455197 29455197 C T ALK Missense_Mutation p.G869R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 29455288 29455288 C T ALK Silent p.L838L 0.31 TCGA-FW-A3R5-06 2 29498068 29498068 C T ALK Silent p.Q646Q 0.23 TCGA-FW-A3R5-06 2 29754972 29754972 G A ALK Silent p.L321L 0.25 TCGA-FW-A3R5-06 2 29917838 29917838 G A ALK Missense_Mutation p.S277F 0.26 deleterious_low_confidence(0) benign(0.009) TCGA-FW-A3R5-06 2 30953601 30953601 C T CAPN13 3'UTR 0.43 TCGA-FW-A3R5-06 2 30954233 30954233 C T CAPN13 Missense_Mutation p.G654R 0.21 deleterious(0.03) benign(0.259) TCGA-FW-A3R5-06 2 30954258 30954258 G A CAPN13 Silent p.F645F 0.40 TCGA-FW-A3R5-06 2 30966408 30966408 G A CAPN13 Missense_Mutation p.S429L 0.10 tolerated(0.31) benign(0.006) TCGA-FW-A3R5-06 2 30973981 30973981 G A CAPN13 Silent p.F408F 0.30 TCGA-FW-A3R5-06 2 30976046 30976046 G A CAPN13 Silent p.F320F 0.23 TCGA-FW-A3R5-06 2 30998884 30998884 C T CAPN13 Missense_Mutation p.G100E 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 2 31010117 31010117 C T CAPN13 Silent p.R25R 0.27 TCGA-FW-A3R5-06 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.28 TCGA-FW-A3R5-06 2 31133838 31133838 C T GALNT14 Missense_Mutation p.G535S 0.32 tolerated(0.67) benign(0.004) TCGA-FW-A3R5-06 2 31154973 31154973 G A GALNT14 Missense_Mutation p.P345L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 31167799 31167799 C T GALNT14 Nonsense_Mutation p.W256* 0.08 TCGA-FW-A3R5-06 2 31215756 31215756 C T GALNT14 Intron 0.28 TCGA-FW-A3R5-06 2 31457512 31457512 G A EHD3 Missense_Mutation p.D9N 0.30 tolerated(0.52) benign(0.001) TCGA-FW-A3R5-06 2 31483684 31483684 T A EHD3 Missense_Mutation p.F271I 0.20 tolerated(0.09) benign(0.259) TCGA-FW-A3R5-06 2 31489572 31489572 G A EHD3 3'UTR 0.20 TCGA-FW-A3R5-06 2 31565099 31565099 C T XDH Missense_Mutation p.G1157R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 31572557 31572557 G A XDH Silent p.F988F 0.32 TCGA-FW-A3R5-06 2 31587038 31587038 C T XDH Missense_Mutation p.D873N 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-FW-A3R5-06 2 31588337 31588337 G A XDH Silent p.L844L 0.24 TCGA-FW-A3R5-06 2 31590856 31590856 C T XDH Missense_Mutation p.G723E 0.22 tolerated(0.05) probably_damaging(0.987) TCGA-FW-A3R5-06 2 31590878 31590878 C T XDH Missense_Mutation p.E716K 0.61 tolerated(0.1) benign(0.022) TCGA-FW-A3R5-06 2 31593296 31593296 G A XDH Silent p.F635F 0.16 TCGA-FW-A3R5-06 2 31595112 31595112 C T XDH Missense_Mutation p.R613Q 0.25 deleterious(0.04) benign(0.023) TCGA-FW-A3R5-06 2 31606007 31606007 C T XDH Missense_Mutation p.G300R 0.24 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 2 31624191 31624191 G A XDH Silent p.H67H 0.10 TCGA-FW-A3R5-06 2 31805774 31805774 C T SRD5A2 RNA 0.23 TCGA-FW-A3R5-06 2 32474867 32474867 C T NLRC4 Missense_Mutation p.S689N 0.26 tolerated(0.24) benign(0.004) TCGA-FW-A3R5-06 2 32476018 32476018 G A NLRC4 Silent p.A305A 0.30 TCGA-FW-A3R5-06 2 32689700 32689700 C T BIRC6 Missense_Mutation p.H1689Y 0.22 benign(0.056) TCGA-FW-A3R5-06 2 32712801 32712801 C T BIRC6 Missense_Mutation p.S2634L 0.33 possibly_damaging(0.679) TCGA-FW-A3R5-06 2 32724803 32724803 C T BIRC6 Silent p.S2886S 0.25 TCGA-FW-A3R5-06 2 32750561 32750561 C T BIRC6 Missense_Mutation p.S3929L 0.33 benign(0.004) TCGA-FW-A3R5-06 2 32891781 32891781 C T TTC27 Silent p.V295V 0.30 TCGA-FW-A3R5-06 2 33246090 33246090 C T LTBP1 Missense_Mutation p.S227L 0.27 tolerated(0.66) benign(0.001) TCGA-FW-A3R5-06 2 33411949 33411949 G A LTBP1 Missense_Mutation p.G410S 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 33412082 33412082 G A LTBP1 Missense_Mutation p.G454E 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-FW-A3R5-06 2 33412138 33412138 G A LTBP1 Missense_Mutation p.G473R 0.20 deleterious(0.03) benign(0.127) TCGA-FW-A3R5-06 2 33505192 33505192 G A LTBP1 Missense_Mutation p.E1027K 0.16 tolerated(0.46) possibly_damaging(0.464) TCGA-FW-A3R5-06 2 33540299 33540299 G A LTBP1 Silent p.Q1231Q 0.41 TCGA-FW-A3R5-06 2 33585684 33585684 C T LTBP1 Nonsense_Mutation p.Q1341* 0.23 TCGA-FW-A3R5-06 2 33588480 33588480 G A LTBP1 Missense_Mutation p.G1432R 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 33590564 33590564 G A LTBP1 Missense_Mutation p.D1569N 0.39 tolerated(0.51) benign(0.06) TCGA-FW-A3R5-06 2 33740115 33740115 G A RASGRP3 5'UTR 0.19 TCGA-FW-A3R5-06 2 33740176 33740176 C T RASGRP3 5'UTR 0.34 TCGA-FW-A3R5-06 2 33783919 33783919 G A RASGRP3 Missense_Mutation p.G629E 0.22 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 2 33810711 33810711 G A FAM98A Silent p.S258S 0.25 TCGA-FW-A3R5-06 2 3391706 3391706 C T TRAPPC12 Silent p.P104P 0.44 TCGA-FW-A3R5-06 2 3392325 3392325 C G TRAPPC12 Missense_Mutation p.L311V 0.23 deleterious(0.03) benign(0.391) TCGA-FW-A3R5-06 2 3504690 3504690 G A ADI1 Silent p.F105F 0.17 TCGA-FW-A3R5-06 2 36623931 36623931 G A CRIM1 Splice_Site p.X169_splice 0.19 TCGA-FW-A3R5-06 2 36782889 36782889 G A FEZ2 Missense_Mutation p.L355F 0.23 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 2 36810533 36810533 G A FEZ2 Missense_Mutation p.S152F 0.25 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 2 36943516 36943516 G A VIT Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) benign(0.097) TCGA-FW-A3R5-06 2 37002154 37002154 G A VIT Missense_Mutation p.R249K 0.44 tolerated(0.11) benign(0.058) TCGA-FW-A3R5-06 2 37036109 37036109 C T VIT Silent p.A628A 0.29 TCGA-FW-A3R5-06 2 3718733 3718733 G A ALLC 5'UTR 0.21 TCGA-FW-A3R5-06 2 37289169 37289169 G A HEATR5B Missense_Mutation p.L537F 0.27 deleterious(0) probably_damaging(0.956) TCGA-FW-A3R5-06 2 37365703 37365703 G A EIF2AK2 Missense_Mutation p.S181F 0.21 tolerated(0.49) benign(0.005) TCGA-FW-A3R5-06 2 37366820 37366820 G A EIF2AK2 Missense_Mutation p.A157V 0.22 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 37398589 37398589 G A SULT6B1 Missense_Mutation p.L219F 0.25 tolerated(0.3) benign(0.405) TCGA-FW-A3R5-06 2 37406712 37406712 G A SULT6B1 Nonsense_Mutation p.R102* 0.36 TCGA-FW-A3R5-06 2 37414539 37414539 C T SULT6B1 Missense_Mutation p.E53K 0.11 tolerated(0.22) benign(0.051) TCGA-FW-A3R5-06 2 37415610 37415610 G A SULT6B1 Silent p.I20I 0.15 TCGA-FW-A3R5-06 2 37873403 37873403 G A CDC42EP3 Missense_Mutation p.P110S 0.10 deleterious(0.01) possibly_damaging(0.728) TCGA-FW-A3R5-06 2 38178625 38178625 C T RMDN2 Silent p.S89S 0.28 TCGA-FW-A3R5-06 2 39050237 39050237 G T DHX57 Silent p.P1063P 0.23 TCGA-FW-A3R5-06 2 39085814 39085814 G A DHX57 Nonsense_Mutation p.R526* 0.30 TCGA-FW-A3R5-06 2 39281897 39281897 G A SOS1 Missense_Mutation p.P193L 0.24 deleterious(0.04) benign(0.082) TCGA-FW-A3R5-06 2 39406354 39406354 C T CDKL4 Missense_Mutation p.E301K 0.20 tolerated(0.59) benign(0.001) TCGA-FW-A3R5-06 2 39515267 39515267 G A MAP4K3 Missense_Mutation p.A490V 0.30 tolerated(0.62) benign(0) TCGA-FW-A3R5-06 2 39931233 39931233 G A TMEM178A Missense_Mutation p.R138Q 0.21 deleterious(0.05) possibly_damaging(0.704) TCGA-FW-A3R5-06 2 40655984 40655984 G A SLC8A1 Silent p.I479I 0.33 TCGA-FW-A3R5-06 2 40656113 40656113 C T SLC8A1 Silent p.L436L 0.24 TCGA-FW-A3R5-06 2 40656476 40656476 C T SLC8A1 Silent p.R315R 0.31 TCGA-FW-A3R5-06 2 40656881 40656881 G A SLC8A1 Silent p.F180F 0.24 TCGA-FW-A3R5-06 2 42720426 42720426 G A KCNG3 Silent p.F72F 0.33 TCGA-FW-A3R5-06 2 43452023 43452023 G A ZFP36L2 Missense_Mutation p.S307F 0.42 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 2 43625187 43625187 G A THADA Nonsense_Mutation p.R1384* 0.39 TCGA-FW-A3R5-06 2 43625191 43625191 G A THADA Silent p.T1382T 0.40 TCGA-FW-A3R5-06 2 43625192 43625192 G A THADA Missense_Mutation p.T1382I 0.31 deleterious(0.01) possibly_damaging(0.766) TCGA-FW-A3R5-06 2 43778950 43778950 G A THADA Silent p.L975L 0.17 TCGA-FW-A3R5-06 2 43804268 43804268 G A THADA Silent p.L310L 0.21 TCGA-FW-A3R5-06 2 43808945 43808945 G A THADA Missense_Mutation p.S219F 0.20 tolerated(0.23) benign(0.045) TCGA-FW-A3R5-06 2 43926790 43926790 G A PLEKHH2 Missense_Mutation p.M231I 0.29 tolerated(0.23) benign(0.003) TCGA-FW-A3R5-06 2 43927322 43927322 C T PLEKHH2 Missense_Mutation p.P409S 0.26 tolerated(0.06) benign(0.031) TCGA-FW-A3R5-06 2 43947855 43947855 G A PLEKHH2 Silent p.K836K 0.28 TCGA-FW-A3R5-06 2 43971011 43971011 T C PLEKHH2 Silent p.F1146F 0.20 TCGA-FW-A3R5-06 2 43984301 43984301 G A PLEKHH2 Missense_Mutation p.G1280E 0.28 deleterious(0.01) possibly_damaging(0.589) TCGA-FW-A3R5-06 2 44040190 44040190 C T ABCG5 3'UTR 0.29 TCGA-FW-A3R5-06 2 44050043 44050043 C T ABCG5 Silent p.E452E 0.31 TCGA-FW-A3R5-06 2 44052128 44052128 G A ABCG5 Silent p.F268F 0.27 TCGA-FW-A3R5-06 2 44065864 44065864 C T ABCG5 5'UTR 0.23 TCGA-FW-A3R5-06 2 44079588 44079588 G A ABCG8 Silent p.R219R 0.37 TCGA-FW-A3R5-06 2 44102413 44102413 C T ABCG8 Silent p.V539V 0.11 TCGA-FW-A3R5-06 2 44429000 44429000 C T PPM1B Missense_Mutation p.S221F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 45169955 45169955 G A SIX3 Missense_Mutation p.E238K 0.16 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 2 45170038 45170038 G A SIX3 Silent p.A265A 0.44 TCGA-FW-A3R5-06 2 45233467 45233467 G A SIX2 Silent p.L240L 0.27 TCGA-FW-A3R5-06 2 45829220 45829220 G A SRBD1 Missense_Mutation p.S28L 0.29 tolerated_low_confidence(0.27) benign(0.005) TCGA-FW-A3R5-06 2 45946 45946 C T FAM110C Missense_Mutation p.G147E 0.44 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 45964 45964 C T FAM110C Missense_Mutation p.G141E 0.19 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 46237647 46237647 C T PRKCE Silent p.F476F 0.12 TCGA-FW-A3R5-06 2 46237648 46237648 C T PRKCE Nonsense_Mutation p.Q477* 0.11 TCGA-FW-A3R5-06 2 46607818 46607818 C T EPAS1 Silent p.P669P 0.27 TCGA-FW-A3R5-06 2 46609673 46609673 C T EPAS1 Silent p.F799F 0.20 TCGA-FW-A3R5-06 2 46986807 46986807 C T SOCS5 Missense_Mutation p.P380S 0.25 tolerated(0.2) probably_damaging(0.997) TCGA-FW-A3R5-06 2 47300925 47300925 G A TTC7A Missense_Mutation p.E814K 0.36 tolerated(0.11) benign(0.14) TCGA-FW-A3R5-06 2 47382489 47382489 G A C2orf61 5'UTR 0.30 TCGA-FW-A3R5-06 2 48589800 48589800 C T FOXN2 Silent p.H219H 0.13 TCGA-FW-A3R5-06 2 48602074 48602074 C T FOXN2 Missense_Mutation p.P263L 0.17 deleterious(0.01) benign(0.227) TCGA-FW-A3R5-06 2 48808114 48808114 C T STON1-GTF2A1L Silent p.L114L 0.36 TCGA-FW-A3R5-06 2 48808137 48808137 C T STON1-GTF2A1L Missense_Mutation p.S122F 0.38 tolerated(0.08) probably_damaging(0.998) TCGA-FW-A3R5-06 2 48896915 48896915 G A STON1-GTF2A1L Missense_Mutation p.E1049K 0.29 tolerated(0.14) benign(0.338) TCGA-FW-A3R5-06 2 48906677 48906677 G A STON1-GTF2A1L 3'UTR 0.62 TCGA-FW-A3R5-06 2 48915876 48915876 C T LHCGR Missense_Mutation p.E354K 0.15 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 2 48936095 48936095 C T LHCGR Silent p.P224P 0.29 TCGA-FW-A3R5-06 2 48936161 48936161 C T LHCGR Silent p.L202L 0.24 TCGA-FW-A3R5-06 2 49210260 49210260 G A FSHR Silent p.F190F 0.18 TCGA-FW-A3R5-06 2 49244651 49244651 C T FSHR Silent p.Q117Q 0.21 TCGA-FW-A3R5-06 2 49295430 49295430 C T FSHR Splice_Site p.X51_splice 0.09 TCGA-FW-A3R5-06 2 49381496 49381496 G A FSHR Missense_Mutation p.R21W 0.32 deleterious(0.04) benign(0.007) TCGA-FW-A3R5-06 2 50282174 50282174 C T NRXN1 Missense_Mutation p.D1283N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 2 50464087 50464087 C T NRXN1 Missense_Mutation p.S1169N 0.30 deleterious(0) benign(0.004) TCGA-FW-A3R5-06 2 50724778 50724778 G A NRXN1 Missense_Mutation p.L898F 0.27 deleterious(0) benign(0.328) TCGA-FW-A3R5-06 2 50847230 50847230 C T NRXN1 Missense_Mutation p.G457E 0.31 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 2 50850753 50850753 C T NRXN1 Missense_Mutation p.G311E 0.35 deleterious(0.05) benign(0.103) TCGA-FW-A3R5-06 2 51254667 51254667 C T NRXN1 Missense_Mutation p.G249S 0.22 tolerated(0.29) possibly_damaging(0.866) TCGA-FW-A3R5-06 2 51254675 51254675 G A NRXN1 Missense_Mutation p.S246L 0.16 deleterious(0.02) benign(0.052) TCGA-FW-A3R5-06 2 51254708 51254708 G A NRXN1 Missense_Mutation p.S235F 0.46 tolerated(0.7) benign(0.138) TCGA-FW-A3R5-06 2 51254947 51254947 G A NRXN1 Silent p.V155V 0.29 TCGA-FW-A3R5-06 2 51255362 51255362 G A NRXN1 Missense_Mutation p.S17L 0.27 tolerated(0.67) benign(0) TCGA-FW-A3R5-06 2 54153116 54153116 G A PSME4 Silent p.F546F 0.23 TCGA-FW-A3R5-06 2 54159124 54159124 A G PSME4 Silent p.L388L 0.36 TCGA-FW-A3R5-06 2 54159206 54159206 G A PSME4 Missense_Mutation p.P361L 0.08 deleterious(0) benign(0.334) TCGA-FW-A3R5-06 2 54849620 54849620 C T SPTBN1 Missense_Mutation p.P354S 0.06 deleterious(0.05) probably_damaging(0.969) TCGA-FW-A3R5-06 2 54856251 54856251 C T SPTBN1 Silent p.I660I 0.29 TCGA-FW-A3R5-06 2 54856572 54856572 C T SPTBN1 Silent p.V767V 0.25 TCGA-FW-A3R5-06 2 55522891 55522891 G A CCDC88A Missense_Mutation p.P1797L 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-FW-A3R5-06 2 55522958 55522958 C T CCDC88A Missense_Mutation p.G1775S 0.26 tolerated(0.47) benign(0.003) TCGA-FW-A3R5-06 2 55792097 55792097 G A SMEK2 Silent p.F672F 0.26 TCGA-FW-A3R5-06 2 55894164 55894164 G C PNPT1 Missense_Mutation p.L380V 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 56098199 56098199 G A EFEMP1 Missense_Mutation p.H354Y 0.25 tolerated(0.5) benign(0.005) TCGA-FW-A3R5-06 2 56108789 56108789 G A EFEMP1 Nonsense_Mutation p.Q200* 0.20 TCGA-FW-A3R5-06 2 56144898 56144898 C T EFEMP1 Missense_Mutation p.R140Q 0.12 tolerated(0.3) benign(0.055) TCGA-FW-A3R5-06 2 56420022 56420022 G A CCDC85A Silent p.A229A 0.30 TCGA-FW-A3R5-06 2 56420206 56420206 G A CCDC85A Missense_Mutation p.E291K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-FW-A3R5-06 2 5832928 5832928 A G SOX11 Silent p.E25E 0.16 TCGA-FW-A3R5-06 2 58359011 58359011 C T VRK2 Missense_Mutation p.P249S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 60688164 60688164 G A BCL11A Missense_Mutation p.S628L 0.32 tolerated(0.32) benign(0.177) TCGA-FW-A3R5-06 2 60688288 60688288 C T BCL11A Missense_Mutation p.E587K 0.37 tolerated(0.1) benign(0.247) TCGA-FW-A3R5-06 2 60688457 60688457 C T BCL11A Silent p.R530R 0.28 TCGA-FW-A3R5-06 2 60689058 60689058 G A BCL11A Missense_Mutation p.P330L 0.30 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 2 60695935 60695935 G A BCL11A Missense_Mutation p.P140L 0.08 tolerated(0.11) benign(0.004) TCGA-FW-A3R5-06 2 60773266 60773266 G A BCL11A Silent p.L75L 0.11 TCGA-FW-A3R5-06 2 60995608 60995608 C T PAPOLG Missense_Mutation p.L84F 0.09 deleterious(0.04) benign(0.039) TCGA-FW-A3R5-06 2 61169509 61169509 C T PUS10 3'UTR 0.31 TCGA-FW-A3R5-06 2 61275754 61275754 C T PEX13 Missense_Mutation p.S354F 0.22 deleterious(0.02) benign(0.245) TCGA-FW-A3R5-06 2 61505556 61505556 G A USP34 Missense_Mutation p.A1760V 0.34 tolerated(0.07) benign(0.014) TCGA-FW-A3R5-06 2 61508254 61508254 G A USP34 Missense_Mutation p.P1708S 0.21 tolerated(0.3) benign(0.093) TCGA-FW-A3R5-06 2 61510285 61510285 G A USP34 Missense_Mutation p.P1665S 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-FW-A3R5-06 2 62066599 62066599 G A FAM161A Missense_Mutation p.P514S 0.25 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 2 62132963 62132963 C T COMMD1 Silent p.P50P 0.20 TCGA-FW-A3R5-06 2 62449618 62449618 C T B3GNT2 Missense_Mutation p.S88F 0.29 tolerated(0.09) benign(0.005) TCGA-FW-A3R5-06 2 63085637 63085637 C T EHBP1 Missense_Mutation p.S244F 0.17 tolerated(0.22) possibly_damaging(0.841) TCGA-FW-A3R5-06 2 63282749 63282749 C T OTX1 Silent p.S121S 0.10 TCGA-FW-A3R5-06 2 63631777 63631777 G A WDPCP Missense_Mutation p.R281C 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 2 64139739 64139739 G A VPS54 Missense_Mutation p.H827Y 0.08 tolerated(0.06) possibly_damaging(0.836) TCGA-FW-A3R5-06 2 64863228 64863228 G A SERTAD2 Missense_Mutation p.P260S 0.28 tolerated(0.13) probably_damaging(0.985) TCGA-FW-A3R5-06 2 65482733 65482733 C T ACTR2 Missense_Mutation p.R219C 0.30 deleterious(0) probably_damaging(0.941) TCGA-FW-A3R5-06 2 65541092 65541092 G A SPRED2 Missense_Mutation p.P267L 0.29 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 2 66795861 66795861 C T MEIS1 Nonsense_Mutation p.Q363* 0.21 TCGA-FW-A3R5-06 2 68358422 68358422 G A WDR92 Missense_Mutation p.S341L 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-FW-A3R5-06 2 68361757 68361757 G A WDR92 Intron 0.18 TCGA-FW-A3R5-06 2 68384802 68384802 C T WDR92 5'Flank 0.36 TCGA-FW-A3R5-06 2 68607929 68607929 C T PLEK Silent p.A91A 0.32 TCGA-FW-A3R5-06 2 68873164 68873164 G A PROKR1 Missense_Mutation p.G71S 0.09 tolerated(0.51) benign(0.012) TCGA-FW-A3R5-06 2 68882034 68882034 C T PROKR1 Silent p.L170L 0.32 TCGA-FW-A3R5-06 2 68882677 68882677 C T PROKR1 Missense_Mutation p.T384I 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.675) TCGA-FW-A3R5-06 2 69002342 69002342 C T ARHGAP25 Intron 0.28 TCGA-FW-A3R5-06 2 69046395 69046395 G T ARHGAP25 Missense_Mutation p.G382C 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 69046420 69046420 G A ARHGAP25 Missense_Mutation p.R390Q 0.32 tolerated(0.74) benign(0.075) TCGA-FW-A3R5-06 2 69049851 69049851 C T ARHGAP25 Missense_Mutation p.S527F 0.35 deleterious(0.02) benign(0.059) TCGA-FW-A3R5-06 2 69093153 69093153 C T BMP10 Silent p.G295G 0.21 TCGA-FW-A3R5-06 2 69098534 69098534 C T BMP10 5'UTR 0.20 TCGA-FW-A3R5-06 2 69172593 69172593 G A GKN2 Intron 0.38 TCGA-FW-A3R5-06 2 69180065 69180065 G A GKN2 5'UTR 0.21 TCGA-FW-A3R5-06 2 69180073 69180073 G A GKN2 5'UTR 0.21 TCGA-FW-A3R5-06 2 69204639 69204639 G A GKN1 Missense_Mutation p.G23R 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-FW-A3R5-06 2 69204640 69204640 G A GKN1 Missense_Mutation p.G23E 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-FW-A3R5-06 2 69409628 69409628 C T ANTXR1 Missense_Mutation p.R397C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 69409764 69409764 C T ANTXR1 Missense_Mutation p.S442F 0.24 deleterious(0.04) possibly_damaging(0.82) TCGA-FW-A3R5-06 2 69472489 69472489 C T ANTXR1 Missense_Mutation p.P523S 0.33 tolerated_low_confidence(0.23) unknown(0) TCGA-FW-A3R5-06 2 69472590 69472590 C T ANTXR1 Silent p.S556S 0.14 TCGA-FW-A3R5-06 2 69736497 69736497 G A AAK1 Silent p.S624S 0.09 TCGA-FW-A3R5-06 2 69752175 69752175 G A AAK1 Missense_Mutation p.P349S 0.17 tolerated(0.32) unknown(0) TCGA-FW-A3R5-06 2 6991667 6991667 C T CMPK2 Silent p.E380E 0.22 TCGA-FW-A3R5-06 2 70096880 70096880 C T GMCL1 Silent p.F416F 0.17 TCGA-FW-A3R5-06 2 7018127 7018127 C T RSAD2 Missense_Mutation p.P66S 0.29 tolerated(0.8) benign(0.001) TCGA-FW-A3R5-06 2 7036089 7036089 G A RSAD2 3'UTR 0.29 TCGA-FW-A3R5-06 2 70387902 70387902 G A C2orf42 Silent p.T457T 0.27 TCGA-FW-A3R5-06 2 70402845 70402845 G A C2orf42 Silent p.G333G 0.27 TCGA-FW-A3R5-06 2 70441545 70441545 G A TIA1 Missense_Mutation p.P324S 0.20 tolerated(0.06) benign(0.013) TCGA-FW-A3R5-06 2 70890513 70890513 G A ADD2 3'UTR 0.30 TCGA-FW-A3R5-06 2 70890626 70890626 C T ADD2 Silent p.K704K 0.34 TCGA-FW-A3R5-06 2 70890760 70890760 C T ADD2 Missense_Mutation p.E660K 0.35 deleterious(0.03) benign(0.129) TCGA-FW-A3R5-06 2 70904966 70904966 G A ADD2 Missense_Mutation p.P476L 0.09 deleterious(0.01) benign(0.009) TCGA-FW-A3R5-06 2 70917960 70917960 G A ADD2 Silent p.A269A 0.22 TCGA-FW-A3R5-06 2 70917961 70917961 G A ADD2 Missense_Mutation p.A269V 0.22 deleterious(0.02) benign(0.032) TCGA-FW-A3R5-06 2 70919657 70919657 C T ADD2 Missense_Mutation p.V195M 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 70922888 70922888 C T ADD2 Missense_Mutation p.G174R 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 70931458 70931458 G A ADD2 Missense_Mutation p.S106F 0.21 deleterious(0) benign(0.438) TCGA-FW-A3R5-06 2 70933493 70933493 C T ADD2 Silent p.Q16Q 0.29 TCGA-FW-A3R5-06 2 71036346 71036346 G A CLEC4F 3'UTR 0.24 TCGA-FW-A3R5-06 2 71043645 71043645 C T CLEC4F Missense_Mutation p.E290K 0.25 tolerated(0.31) benign(0.079) TCGA-FW-A3R5-06 2 71044053 71044053 C T CLEC4F Missense_Mutation p.G154R 0.16 tolerated(0.16) probably_damaging(0.952) TCGA-FW-A3R5-06 2 71058139 71058139 C G CD207 3'UTR 0.21 TCGA-FW-A3R5-06 2 71062926 71062926 C T CD207 5'UTR 0.36 TCGA-FW-A3R5-06 2 71576875 71576875 C T ZNF638 Missense_Mutation p.P264L 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 71709035 71709035 C T DYSF Silent p.I58I 0.26 TCGA-FW-A3R5-06 2 71709037 71709037 C T DYSF Missense_Mutation p.P59L 0.27 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 2 71730343 71730343 G A DYSF Splice_Site p.X80_splice 0.28 TCGA-FW-A3R5-06 2 71742858 71742858 G A DYSF Missense_Mutation p.G289R 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 71744131 71744131 C T DYSF Missense_Mutation p.R322C 0.22 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 2 71747977 71747977 G A DYSF Silent p.G364G 0.23 TCGA-FW-A3R5-06 2 71747982 71747982 G A DYSF Missense_Mutation p.R366K 0.22 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 2 71762184 71762184 C T DYSF Missense_Mutation p.P472S 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-FW-A3R5-06 2 71778763 71778763 G A DYSF Silent p.R573R 0.26 TCGA-FW-A3R5-06 2 71795107 71795107 C T DYSF Silent p.A864A 0.33 TCGA-FW-A3R5-06 2 71839802 71839802 C T DYSF Missense_Mutation p.P1418L 0.25 deleterious(0) possibly_damaging(0.883) TCGA-FW-A3R5-06 2 71839936 71839936 G A DYSF Missense_Mutation p.D1463N 0.19 tolerated(0.12) benign(0.429) TCGA-FW-A3R5-06 2 71871187 71871187 C T DYSF Silent p.T1540T 0.21 TCGA-FW-A3R5-06 2 71887770 71887770 C T DYSF Silent p.P1664P 0.30 TCGA-FW-A3R5-06 2 71891404 71891404 C T DYSF Silent p.F1670F 0.33 TCGA-FW-A3R5-06 2 71891540 71891540 C T DYSF Missense_Mutation p.R1716C 0.32 tolerated(0.24) benign(0.002) TCGA-FW-A3R5-06 2 71892314 71892314 G A DYSF Missense_Mutation p.D1733N 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 2 71901373 71901373 G A DYSF Missense_Mutation p.R1944Q 0.34 tolerated(0.53) benign(0.002) TCGA-FW-A3R5-06 2 71906323 71906323 G A DYSF Nonsense_Mutation p.W2007* 0.22 TCGA-FW-A3R5-06 2 71908145 71908145 G A DYSF Missense_Mutation p.M2026I 0.18 deleterious(0.02) possibly_damaging(0.756) TCGA-FW-A3R5-06 2 71909718 71909718 C T DYSF Silent p.L2078L 0.33 TCGA-FW-A3R5-06 2 71913717 71913717 C T DYSF 3'UTR 0.19 TCGA-FW-A3R5-06 2 72360181 72360181 G A CYP26B1 Missense_Mutation p.R373C 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 2 73315552 73315552 C T RAB11FIP5 Silent p.E398E 0.20 TCGA-FW-A3R5-06 2 73315572 73315572 G A RAB11FIP5 Missense_Mutation p.R392C 0.21 tolerated(0.08) benign(0.004) TCGA-FW-A3R5-06 2 73315777 73315777 G A RAB11FIP5 Silent p.D323D 0.29 TCGA-FW-A3R5-06 2 73476202 73476202 C T CCT7 Silent p.V289V 0.25 TCGA-FW-A3R5-06 2 73676650 73676650 C T ALMS1 Missense_Mutation p.P998L 0.29 benign(0.184) TCGA-FW-A3R5-06 2 73677031 73677031 C T ALMS1 Missense_Mutation p.A1125V 0.18 benign(0.016) TCGA-FW-A3R5-06 2 73678100 73678100 C T ALMS1 Silent p.P1481P 0.32 TCGA-FW-A3R5-06 2 73678921 73678921 C T ALMS1 Missense_Mutation p.S1755F 0.09 probably_damaging(0.993) TCGA-FW-A3R5-06 2 73680076 73680076 C T ALMS1 Missense_Mutation p.S2140F 0.16 benign(0.234) TCGA-FW-A3R5-06 2 73682332 73682332 C T ALMS1 Silent p.S2527S 0.11 TCGA-FW-A3R5-06 2 74041116 74041116 C T C2orf78 Missense_Mutation p.P204S 0.32 tolerated(0.37) probably_damaging(1) TCGA-FW-A3R5-06 2 74042300 74042300 G A C2orf78 Missense_Mutation p.S317N 0.23 tolerated(0.24) possibly_damaging(0.853) TCGA-FW-A3R5-06 2 74042346 74042346 G A C2orf78 Silent p.G332G 0.31 TCGA-FW-A3R5-06 2 74042515 74042515 C T C2orf78 Missense_Mutation p.P389S 0.12 tolerated(0.11) probably_damaging(0.963) TCGA-FW-A3R5-06 2 74042709 74042709 C T C2orf78 Silent p.L453L 0.41 TCGA-FW-A3R5-06 2 74043403 74043403 G A C2orf78 Missense_Mutation p.E685K 0.09 tolerated(0.11) benign(0.187) TCGA-FW-A3R5-06 2 74044075 74044075 G A C2orf78 Missense_Mutation p.E909K 0.24 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 2 74140694 74140694 C T ACTG2 Silent p.R178R 0.22 TCGA-FW-A3R5-06 2 74141990 74141990 C T ACTG2 Missense_Mutation p.S266F 0.26 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FW-A3R5-06 2 74185845 74185845 C T DGUOK Silent p.T272T 0.19 TCGA-FW-A3R5-06 2 74275217 74275217 C T TET3 Missense_Mutation p.P590S 0.30 deleterious(0.02) benign(0.03) TCGA-FW-A3R5-06 2 74328067 74328067 C T TET3 Silent p.P1249P 0.36 TCGA-FW-A3R5-06 2 74328294 74328294 C T TET3 Missense_Mutation p.S1325L 0.23 tolerated(0.34) benign(0.002) TCGA-FW-A3R5-06 2 74438352 74438352 C T MTHFD2 Nonsense_Mutation p.R233* 0.24 TCGA-FW-A3R5-06 2 74452007 74452007 C T SLC4A5 Missense_Mutation p.R1085K 0.25 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 2 74452068 74452068 C T SLC4A5 Missense_Mutation p.D1065N 0.25 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 2 74460664 74460664 G A SLC4A5 Silent p.F820F 0.28 TCGA-FW-A3R5-06 2 74480229 74480229 G A SLC4A5 Silent p.A380A 0.32 TCGA-FW-A3R5-06 2 74489273 74489273 C T SLC4A5 Missense_Mutation p.G268R 0.14 deleterious(0.02) probably_damaging(0.965) TCGA-FW-A3R5-06 2 74489326 74489326 G A SLC4A5 Missense_Mutation p.P250L 0.19 tolerated(0.16) benign(0.067) TCGA-FW-A3R5-06 2 74542148 74542148 C T SLC4A5 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-FW-A3R5-06 2 74592677 74592677 C T DCTN1 Silent p.L998L 0.22 TCGA-FW-A3R5-06 2 74595936 74595936 G A DCTN1 Silent p.F591F 0.25 TCGA-FW-A3R5-06 2 74763927 74763927 C T LOXL3 Missense_Mutation p.G274E 0.31 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 2 74907370 74907370 C T SEMA4F 3'UTR 0.38 TCGA-FW-A3R5-06 2 74907442 74907442 C T SEMA4F 3'UTR 0.37 TCGA-FW-A3R5-06 2 75107456 75107456 C T HK2 Missense_Mutation p.R444C 0.33 tolerated(0.08) benign(0.011) TCGA-FW-A3R5-06 2 75115153 75115153 C T HK2 Silent p.I781I 0.29 TCGA-FW-A3R5-06 2 75196579 75196579 C T POLE4 3'UTR 0.32 TCGA-FW-A3R5-06 2 75347872 75347872 G A TACR1 Missense_Mutation p.L138F 0.26 tolerated(0.31) probably_damaging(0.986) TCGA-FW-A3R5-06 2 75929446 75929446 G A GCFC2 Silent p.S166S 0.31 TCGA-FW-A3R5-06 2 75929447 75929447 G A GCFC2 Missense_Mutation p.S166F 0.31 deleterious(0.01) benign(0.051) TCGA-FW-A3R5-06 2 76975759 76975759 C T LRRTM4 3'UTR 0.42 TCGA-FW-A3R5-06 2 77746607 77746607 G A LRRTM4 Missense_Mutation p.H130Y 0.42 tolerated(0.18) probably_damaging(0.998) TCGA-FW-A3R5-06 2 77746666 77746666 C T LRRTM4 Missense_Mutation p.R110K 0.18 tolerated(0.21) benign(0.34) TCGA-FW-A3R5-06 2 77746839 77746839 G A LRRTM4 Silent p.F52F 0.35 TCGA-FW-A3R5-06 2 79253124 79253124 G A REG3G 5'UTR 0.31 TCGA-FW-A3R5-06 2 79253856 79253856 G A REG3G Missense_Mutation p.E32K 0.27 tolerated(0.32) benign(0.012) TCGA-FW-A3R5-06 2 79312396 79312396 C T REG1B Nonsense_Mutation p.W149* 0.29 TCGA-FW-A3R5-06 2 79313613 79313613 C T REG1B Missense_Mutation p.M67I 0.23 tolerated(0.18) benign(0.02) TCGA-FW-A3R5-06 2 79314691 79314691 G A REG1B Silent p.F16F 0.30 TCGA-FW-A3R5-06 2 79350286 79350286 G A REG1A Nonsense_Mutation p.W149* 0.37 TCGA-FW-A3R5-06 2 79363156 79363156 G A REG1P RNA 0.18 TCGA-FW-A3R5-06 2 79363967 79363967 C T REG1P RNA 0.33 TCGA-FW-A3R5-06 2 79384342 79384342 C T REG3A 3'UTR 0.14 TCGA-FW-A3R5-06 2 79384754 79384754 C T REG3A Missense_Mutation p.R135K 0.30 tolerated(0.88) benign(0.005) TCGA-FW-A3R5-06 2 79878690 79878690 C T CTNNA2 Missense_Mutation p.S3L 0.28 tolerated_low_confidence(0.11) benign(0.049) TCGA-FW-A3R5-06 2 80772140 80772140 G A CTNNA2 Missense_Mutation p.E442K 0.21 tolerated(0.14) benign(0.035) TCGA-FW-A3R5-06 2 80782861 80782861 C T CTNNA2 Silent p.L528L 0.25 TCGA-FW-A3R5-06 2 80874910 80874910 C T CTNNA2 Silent p.F877F 0.20 TCGA-FW-A3R5-06 2 80875044 80875044 C T CTNNA2 3'UTR 0.19 TCGA-FW-A3R5-06 2 84777114 84777114 G A DNAH6 Missense_Mutation p.R473Q 0.27 tolerated(0.38) benign(0.002) TCGA-FW-A3R5-06 2 84780088 84780088 C T DNAH6 Missense_Mutation p.P511L 0.21 deleterious(0) benign(0.162) TCGA-FW-A3R5-06 2 84784977 84784977 G A DNAH6 Missense_Mutation p.G574E 0.12 tolerated(1) benign(0) TCGA-FW-A3R5-06 2 84800711 84800711 G C DNAH6 Missense_Mutation p.D642H 0.27 deleterious(0.01) possibly_damaging(0.469) TCGA-FW-A3R5-06 2 84811201 84811201 C T DNAH6 Missense_Mutation p.P770S 0.20 tolerated(0.11) benign(0.05) TCGA-FW-A3R5-06 2 85051079 85051079 C T TRABD2A Silent p.E395E 0.26 TCGA-FW-A3R5-06 2 85097546 85097546 C T TRABD2A Missense_Mutation p.G158R 0.21 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 2 85577343 85577343 G A RETSAT Missense_Mutation p.H207Y 0.18 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 2 85662073 85662073 G A SH2D6 5'UTR 0.18 TCGA-FW-A3R5-06 2 85921566 85921566 C T GNLY Missense_Mutation p.L9F 0.31 deleterious(0.01) possibly_damaging(0.86) TCGA-FW-A3R5-06 2 85922478 85922478 G A GNLY Missense_Mutation p.D30N 0.36 deleterious(0.01) benign(0.251) TCGA-FW-A3R5-06 2 85924772 85924772 G A GNLY Silent p.E133E 0.08 TCGA-FW-A3R5-06 2 85925826 85925826 C T GNLY 3'UTR 0.33 TCGA-FW-A3R5-06 2 86258507 86258507 G A POLR1A Silent p.I1508I 0.28 TCGA-FW-A3R5-06 2 86327250 86327250 G A POLR1A Silent p.S41S 0.28 TCGA-FW-A3R5-06 2 86678279 86678279 C T KDM3A Silent p.R132R 0.30 TCGA-FW-A3R5-06 2 86790576 86790576 A G CHMP3 Intron 0.31 TCGA-FW-A3R5-06 2 86980590 86980590 C T RMND5A Missense_Mutation p.L144F 0.32 deleterious(0.01) benign(0.407) TCGA-FW-A3R5-06 2 87013055 87013055 C T CD8A Silent p.A232A 0.26 TCGA-FW-A3R5-06 2 87069238 87069238 C T CD8B Intron 0.36 TCGA-FW-A3R5-06 2 88082402 88082402 C T RGPD2 Missense_Mutation p.D1381N 0.31 tolerated(0.15) possibly_damaging(0.728) TCGA-FW-A3R5-06 2 8822283 8822283 C T ID2 5'UTR 0.33 TCGA-FW-A3R5-06 2 88367436 88367436 G A SMYD1 Missense_Mutation p.G18E 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 2 88387520 88387520 G A SMYD1 Missense_Mutation p.D152N 0.23 tolerated(0.49) benign(0.007) TCGA-FW-A3R5-06 2 88402646 88402646 C T SMYD1 Missense_Mutation p.R320C 0.39 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 2 88474181 88474181 A G THNSL2 Missense_Mutation p.R83G 0.29 tolerated(0.14) benign(0.005) TCGA-FW-A3R5-06 2 88482261 88482261 C T THNSL2 Silent p.V282V 0.18 TCGA-FW-A3R5-06 2 88485422 88485422 C T THNSL2 Missense_Mutation p.P412L 0.40 deleterious(0.04) benign(0.254) TCGA-FW-A3R5-06 2 8871662 8871662 G A KIDINS220 Missense_Mutation p.L1502F 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-FW-A3R5-06 2 8873709 8873709 G A KIDINS220 Silent p.R1306R 0.31 TCGA-FW-A3R5-06 2 88825180 88825180 C T TEX37 Silent p.Y6Y 0.26 TCGA-FW-A3R5-06 2 88828854 88828854 C T TEX37 Silent p.L135L 0.31 TCGA-FW-A3R5-06 2 8890460 8890460 G A KIDINS220 Missense_Mutation p.R1066C 0.26 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 2 89100768 89100768 G A ANKRD36BP2 RNA 0.23 TCGA-FW-A3R5-06 2 89156784 89156784 G A IGKC 3'UTR 0.18 TCGA-FW-A3R5-06 2 89157152 89157152 C T IGKC Missense_Mutation p.E16K 0.33 deleterious(0.02) benign(0.122) TCGA-FW-A3R5-06 2 89160099 89160099 C T IGKJ5 Silent p.G7G 0.30 TCGA-FW-A3R5-06 2 89265922 89265922 G A IGKV1-6 Silent p.I70I 0.34 TCGA-FW-A3R5-06 2 89265995 89265995 C T IGKV1-6 Missense_Mutation p.R46Q 0.23 tolerated(0.43) benign(0.013) TCGA-FW-A3R5-06 2 89266222 89266222 G A IGKV1-6 Silent p.L12L 0.22 TCGA-FW-A3R5-06 2 89266243 89266243 G A IGKV1-6 Silent p.V5V 0.15 TCGA-FW-A3R5-06 2 89278196 89278196 G A IGKV3-7 Nonsense_Mutation p.Q47* 0.17 TCGA-FW-A3R5-06 2 8928844 8928844 G A KIDINS220 Missense_Mutation p.L574F 0.26 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 2 89291972 89291972 C T IGKV1-8 Missense_Mutation p.E101K 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-FW-A3R5-06 2 8938378 8938378 A C KIDINS220 Missense_Mutation p.V318G 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 2 89384736 89384736 G A IGKV3-15 Silent p.T94T 0.11 TCGA-FW-A3R5-06 2 89384737 89384737 G A IGKV3-15 Missense_Mutation p.T94I 0.11 deleterious(0) benign(0.168) TCGA-FW-A3R5-06 2 89416832 89416832 G A IGKV1-17 3'Flank 0.21 TCGA-FW-A3R5-06 2 89476605 89476605 G A IGKV2-24 Missense_Mutation p.L4F 0.14 tolerated(0.05) benign(0.112) TCGA-FW-A3R5-06 2 89476608 89476608 G A IGKV2-24 Missense_Mutation p.L3F 0.11 tolerated(0.69) benign(0.019) TCGA-FW-A3R5-06 2 89976201 89976201 G A IGKV2D-30 Missense_Mutation p.M24I 0.40 deleterious(0.03) benign(0.193) TCGA-FW-A3R5-06 2 8998792 8998792 C T MBOAT2 3'UTR 0.28 TCGA-FW-A3R5-06 2 8998793 8998793 C T MBOAT2 3'UTR 0.27 TCGA-FW-A3R5-06 2 89999440 89999440 C T IGKV2D-28 Missense_Mutation p.S81F 0.19 deleterious(0) possibly_damaging(0.858) TCGA-FW-A3R5-06 2 90044161 90044161 C T IGKV2D-24 Missense_Mutation p.P28S 0.27 deleterious(0) possibly_damaging(0.705) TCGA-FW-A3R5-06 2 90060758 90060758 G A IGKV6D-21 Silent p.K35K 0.22 TCGA-FW-A3R5-06 2 90078285 90078285 T C IGKV3D-20 Missense_Mutation p.Y108H 0.10 deleterious(0.04) benign(0.07) TCGA-FW-A3R5-06 2 90108537 90108537 C T IGKV6D-41 Missense_Mutation p.S3F 0.25 tolerated(0.73) benign(0.033) TCGA-FW-A3R5-06 2 90121694 90121694 C T IGKV1D-17 Silent p.L13L 0.14 TCGA-FW-A3R5-06 2 90139096 90139096 G A IGKV1D-16 5'UTR 0.19 TCGA-FW-A3R5-06 2 90139396 90139396 C T IGKV1D-16 Missense_Mutation p.A56V 0.25 tolerated(0.16) benign(0.011) TCGA-FW-A3R5-06 2 90139424 90139424 C T IGKV1D-16 Silent p.A65A 0.15 TCGA-FW-A3R5-06 2 90212209 90212209 G A IGKV3D-11 Missense_Mutation p.E101K 0.33 deleterious(0.01) possibly_damaging(0.889) TCGA-FW-A3R5-06 2 90229394 90229394 G A IGKV1D-42 Missense_Mutation p.D72N 0.29 tolerated(0.38) benign(0.007) TCGA-FW-A3R5-06 2 90249169 90249169 C A IGKV1D-43 Missense_Mutation p.T42N 0.19 deleterious(0.01) benign(0.341) TCGA-FW-A3R5-06 2 90249396 90249396 C T IGKV1D-43 3'Flank 0.25 TCGA-FW-A3R5-06 2 95480785 95480785 C T ANKRD20A8P RNA 0.15 TCGA-FW-A3R5-06 2 95480886 95480886 C T ANKRD20A8P RNA 0.24 TCGA-FW-A3R5-06 2 95480982 95480982 C T ANKRD20A8P RNA 0.17 TCGA-FW-A3R5-06 2 95540633 95540633 G A TEKT4 Missense_Mutation p.D276N 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 2 95540699 95540699 G A TEKT4 Missense_Mutation p.E298K 0.25 deleterious(0) possibly_damaging(0.728) TCGA-FW-A3R5-06 2 95847020 95847020 C T ZNF2 Silent p.S149S 0.25 TCGA-FW-A3R5-06 2 95847143 95847143 C T ZNF2 Silent p.T190T 0.18 TCGA-FW-A3R5-06 2 95847290 95847290 C T ZNF2 Silent p.F239F 0.10 TCGA-FW-A3R5-06 2 95940216 95940216 C T PROM2 5'UTR 0.46 TCGA-FW-A3R5-06 2 95941690 95941690 G A PROM2 Missense_Mutation p.E103K 0.22 deleterious(0.01) possibly_damaging(0.833) TCGA-FW-A3R5-06 2 95947900 95947900 G A PROM2 Missense_Mutation p.E552K 0.27 tolerated(0.41) benign(0.034) TCGA-FW-A3R5-06 2 96040113 96040113 C T KCNIP3 Missense_Mutation p.A84V 0.21 tolerated(0.07) benign(0.097) TCGA-FW-A3R5-06 2 96521807 96521807 A - ANKRD36C Frame_Shift_Del p.L428* 0.18 TCGA-FW-A3R5-06 2 96581799 96581799 G A ANKRD36C Missense_Mutation p.A793V 0.41 tolerated_low_confidence(0.18) possibly_damaging(0.494) TCGA-FW-A3R5-06 2 96691678 96691678 C T GPAT2 Missense_Mutation p.C413Y 0.29 tolerated(1) unknown(0) TCGA-FW-A3R5-06 2 96780804 96780804 C T ADRA2B Missense_Mutation p.R362Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 2 96789678 96789678 C T ASTL Missense_Mutation p.G403R 0.29 tolerated_low_confidence(0.58) benign(0.002) TCGA-FW-A3R5-06 2 96795611 96795611 G A ASTL Missense_Mutation p.L276F 0.11 tolerated(0.06) possibly_damaging(0.861) TCGA-FW-A3R5-06 2 96852387 96852387 G A STARD7 3'UTR 0.32 TCGA-FW-A3R5-06 2 96859059 96859059 G A STARD7 Missense_Mutation p.A194V 0.33 tolerated(0.05) possibly_damaging(0.568) TCGA-FW-A3R5-06 2 96952164 96952164 G A SNRNP200 Silent p.P1296P 0.24 TCGA-FW-A3R5-06 2 96952165 96952165 G A SNRNP200 Missense_Mutation p.P1296L 0.24 deleterious(0.02) benign(0.008) TCGA-FW-A3R5-06 2 96961310 96961310 G A SNRNP200 Silent p.I586I 0.26 TCGA-FW-A3R5-06 2 96992898 96992898 C T ITPRIPL1 Nonsense_Mutation p.Q185* 0.26 TCGA-FW-A3R5-06 2 97033013 97033013 C T NCAPH Missense_Mutation p.H634Y 0.28 deleterious(0.02) possibly_damaging(0.811) TCGA-FW-A3R5-06 2 97171064 97171064 G A NEURL3 RNA 0.23 TCGA-FW-A3R5-06 2 97373078 97373078 G A LMAN2L Missense_Mutation p.S332F 0.35 tolerated(0.69) probably_damaging(0.993) TCGA-FW-A3R5-06 2 97377690 97377690 G A LMAN2L Missense_Mutation p.P205S 0.30 tolerated(0.84) benign(0.131) TCGA-FW-A3R5-06 2 97426937 97426937 C T CNNM4 Silent p.F67F 0.26 TCGA-FW-A3R5-06 2 97427263 97427263 C T CNNM4 Missense_Mutation p.P176L 0.29 tolerated(0.17) benign(0.028) TCGA-FW-A3R5-06 2 97464925 97464925 C T CNNM4 Nonsense_Mutation p.R605* 0.19 TCGA-FW-A3R5-06 2 97475240 97475240 G A CNNM4 Missense_Mutation p.E772K 0.30 tolerated_low_confidence(0.06) benign(0.013) TCGA-FW-A3R5-06 2 97494389 97494389 T G CNNM3 Nonsense_Mutation p.Y624* 0.40 TCGA-FW-A3R5-06 2 97526709 97526709 G A SEMA4C Missense_Mutation p.P719L 0.24 tolerated(0.28) benign(0.218) TCGA-FW-A3R5-06 2 97527334 97527334 G A SEMA4C Missense_Mutation p.L552F 0.17 tolerated(0.84) benign(0.003) TCGA-FW-A3R5-06 2 97527522 97527522 G A SEMA4C Missense_Mutation p.A518V 0.21 deleterious(0) benign(0.086) TCGA-FW-A3R5-06 2 97749488 97749488 G A FAHD2B 3'UTR 0.09 TCGA-FW-A3R5-06 2 97757237 97757237 G A FAHD2B Silent p.F69F 0.23 TCGA-FW-A3R5-06 2 97810277 97810277 C T ANKRD36 Silent p.A308A 0.21 TCGA-FW-A3R5-06 2 97852938 97852938 C T ANKRD36 Missense_Mutation p.S682F 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 2 98274739 98274739 G A ACTR1B Missense_Mutation p.A233V 0.14 tolerated(0.08) benign(0.013) TCGA-FW-A3R5-06 2 98351054 98351054 G A ZAP70 Missense_Mutation p.D321N 0.23 tolerated(0.13) benign(0.087) TCGA-FW-A3R5-06 2 98351872 98351872 G A ZAP70 Missense_Mutation p.M414I 0.13 deleterious(0.01) benign(0.328) TCGA-FW-A3R5-06 2 98378568 98378568 G A TMEM131 Missense_Mutation p.P1607S 0.31 tolerated_low_confidence(0.14) possibly_damaging(0.56) TCGA-FW-A3R5-06 2 98413354 98413354 G A TMEM131 Missense_Mutation p.S989F 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-FW-A3R5-06 2 98421634 98421634 C T TMEM131 Silent p.Q773Q 0.15 TCGA-FW-A3R5-06 2 98744710 98744710 C T VWA3B Silent p.S237S 0.25 TCGA-FW-A3R5-06 2 98744738 98744738 C T VWA3B Missense_Mutation p.P247S 0.30 tolerated(0.27) benign(0.034) TCGA-FW-A3R5-06 2 98866842 98866842 G A VWA3B Missense_Mutation p.G912E 0.25 deleterious(0) possibly_damaging(0.891) TCGA-FW-A3R5-06 2 98914367 98914367 C T VWA3B Intron 0.35 TCGA-FW-A3R5-06 2 98916675 98916675 G A VWA3B Missense_Mutation p.R1139Q 0.29 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 2 98996696 98996696 G A CNGA3 Missense_Mutation p.D92N 0.25 tolerated(0.12) benign(0.005) TCGA-FW-A3R5-06 2 99013055 99013055 G C CNGA3 Silent p.L474L 0.19 TCGA-FW-A3R5-06 2 99013074 99013074 C T CNGA3 Missense_Mutation p.R481C 0.38 deleterious(0.02) probably_damaging(0.917) TCGA-FW-A3R5-06 2 99170840 99170840 C T INPP4A Missense_Mutation p.S490L 0.30 tolerated(0.05) benign(0.063) TCGA-FW-A3R5-06 2 99438647 99438647 C T KIAA1211L Missense_Mutation p.D697N 0.15 deleterious(0) possibly_damaging(0.896) TCGA-FW-A3R5-06 2 99438711 99438711 C T KIAA1211L Silent p.P675P 0.39 TCGA-FW-A3R5-06 2 99439325 99439325 C T KIAA1211L Missense_Mutation p.G471R 0.29 tolerated(0.11) probably_damaging(0.979) TCGA-FW-A3R5-06 2 99439351 99439351 C T KIAA1211L Missense_Mutation p.R462K 0.21 tolerated(0.97) benign(0.14) TCGA-FW-A3R5-06 2 99439496 99439496 G A KIAA1211L Missense_Mutation p.P414S 0.26 tolerated(0.28) possibly_damaging(0.803) TCGA-FW-A3R5-06 2 99448865 99448865 C T KIAA1211L Silent p.R162R 0.30 TCGA-FW-A3R5-06 2 99448892 99448892 C T KIAA1211L Missense_Mutation p.M153I 0.34 deleterious(0.05) benign(0.043) TCGA-FW-A3R5-06 2 99634720 99634720 G A TSGA10 Missense_Mutation p.S672L 0.22 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 2 99725409 99725409 G A TSGA10 Missense_Mutation p.R33C 0.15 tolerated(0.05) benign(0.207) TCGA-FW-A3R5-06 3 100174843 100174843 C T LNP1 3'UTR 0.13 TCGA-FW-A3R5-06 3 100354555 100354555 C T GPR128 Missense_Mutation p.S161F 0.16 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 3 100378688 100378688 G A GPR128 Splice_Site p.X660_splice 0.26 TCGA-FW-A3R5-06 3 100467173 100467173 C T TFG Missense_Mutation p.S334F 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.485) TCGA-FW-A3R5-06 3 100508335 100508335 C T ABI3BP Silent p.V664V 0.40 TCGA-FW-A3R5-06 3 100585734 100585734 C T ABI3BP Missense_Mutation p.R333Q 0.31 tolerated(1) benign(0.238) TCGA-FW-A3R5-06 3 100593733 100593733 G A ABI3BP Missense_Mutation p.P295S 0.33 deleterious(0.03) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 100594366 100594366 C T ABI3BP Missense_Mutation p.G275E 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-FW-A3R5-06 3 100594382 100594382 C T ABI3BP Missense_Mutation p.E270K 0.28 deleterious(0.01) benign(0.292) TCGA-FW-A3R5-06 3 100645220 100645220 C T ABI3BP Missense_Mutation p.G69E 0.17 deleterious(0) probably_damaging(0.931) TCGA-FW-A3R5-06 3 10081488 10081488 C T FANCD2 Silent p.I218I 0.17 TCGA-FW-A3R5-06 3 10088351 10088351 C T FANCD2 Nonsense_Mutation p.R408* 0.15 TCGA-FW-A3R5-06 3 10089688 10089688 C T FANCD2 Missense_Mutation p.L456F 0.08 tolerated(0.7) benign(0.047) TCGA-FW-A3R5-06 3 101060585 101060585 G A SENP7 Silent p.F715F 0.26 TCGA-FW-A3R5-06 3 101086823 101086823 G A SENP7 Missense_Mutation p.L277F 0.23 tolerated(0.07) benign(0.058) TCGA-FW-A3R5-06 3 101117834 101117834 G A SENP7 Missense_Mutation p.P183L 0.30 tolerated(0.83) benign(0.002) TCGA-FW-A3R5-06 3 101390172 101390172 G A ZBTB11 Missense_Mutation p.P194S 0.24 tolerated(0.48) benign(0.021) TCGA-FW-A3R5-06 3 10140504 10140504 C T FANCD2 Missense_Mutation p.S1429F 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.66) TCGA-FW-A3R5-06 3 101540472 101540472 C T NXPE3 Missense_Mutation p.P452S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 102175092 102175092 G A ZPLD1 Missense_Mutation p.G144E 0.31 deleterious(0.01) probably_damaging(0.935) TCGA-FW-A3R5-06 3 102183090 102183090 C T ZPLD1 Silent p.F268F 0.28 TCGA-FW-A3R5-06 3 10242054 10242054 G A IRAK2 Nonsense_Mutation p.W93* 0.22 TCGA-FW-A3R5-06 3 10251308 10251308 C T IRAK2 Missense_Mutation p.L154F 0.33 tolerated(0.69) benign(0.004) TCGA-FW-A3R5-06 3 10255195 10255195 G A IRAK2 Missense_Mutation p.E251K 0.08 tolerated(0.08) benign(0.036) TCGA-FW-A3R5-06 3 10261405 10261405 C T IRAK2 Silent p.I315I 0.37 TCGA-FW-A3R5-06 3 10280488 10280488 C T IRAK2 Silent p.L510L 0.19 TCGA-FW-A3R5-06 3 10290984 10290984 C T TATDN2 Missense_Mutation p.P34S 0.32 tolerated_low_confidence(0.12) benign(0.066) TCGA-FW-A3R5-06 3 10291178 10291178 C T TATDN2 Silent p.S98S 0.25 TCGA-FW-A3R5-06 3 10291286 10291286 C T TATDN2 Silent p.A134A 0.19 TCGA-FW-A3R5-06 3 10379965 10379965 C T ATP2B2 Silent p.P1105P 0.15 TCGA-FW-A3R5-06 3 10384494 10384494 C T ATP2B2 Silent p.K953K 0.09 TCGA-FW-A3R5-06 3 10387188 10387188 G A ATP2B2 Silent p.I861I 0.30 TCGA-FW-A3R5-06 3 10392112 10392112 G A ATP2B2 Silent p.F762F 0.39 TCGA-FW-A3R5-06 3 10420095 10420095 C T ATP2B2 Splice_Site p.X348_splice 0.27 TCGA-FW-A3R5-06 3 10420946 10420946 C T ATP2B2 Silent p.V341V 0.30 TCGA-FW-A3R5-06 3 10429970 10429970 C T ATP2B2 Missense_Mutation p.D300N 0.11 tolerated(0.3) possibly_damaging(0.612) TCGA-FW-A3R5-06 3 10452333 10452333 G A ATP2B2 Silent p.S122S 0.24 TCGA-FW-A3R5-06 3 105252524 105252524 C T ALCAM Silent p.P179P 0.24 TCGA-FW-A3R5-06 3 105252525 105252525 C T ALCAM Missense_Mutation p.L180F 0.24 tolerated(0.11) benign(0.148) TCGA-FW-A3R5-06 3 105258925 105258925 G A ALCAM Silent p.E279E 0.10 TCGA-FW-A3R5-06 3 105400547 105400547 G A CBLB Intron 0.25 TCGA-FW-A3R5-06 3 105412371 105412371 G A CBLB Missense_Mutation p.P674L 0.37 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 3 107096404 107096404 C T CCDC54 5'UTR 0.17 TCGA-FW-A3R5-06 3 107096780 107096780 G A CCDC54 Missense_Mutation p.E116K 0.31 tolerated(0.15) benign(0.136) TCGA-FW-A3R5-06 3 107097124 107097124 G A CCDC54 Silent p.R230R 0.30 TCGA-FW-A3R5-06 3 107491536 107491536 C T BBX Missense_Mutation p.S323F 0.14 deleterious(0.04) benign(0.003) TCGA-FW-A3R5-06 3 107517425 107517425 C T BBX Silent p.I803I 0.23 TCGA-FW-A3R5-06 3 107937477 107937477 A G IFT57 Silent p.P133P 0.21 TCGA-FW-A3R5-06 3 108070663 108070663 G A HHLA2 Translation_Start_Site p.M1? 0.41 deleterious(0.01) benign(0.403) TCGA-FW-A3R5-06 3 108076871 108076871 C T HHLA2 Missense_Mutation p.S289L 0.21 deleterious(0.04) benign(0.037) TCGA-FW-A3R5-06 3 108076874 108076874 G A HHLA2 Nonsense_Mutation p.W290* 0.29 TCGA-FW-A3R5-06 3 108112947 108112947 C T MYH15 Silent p.Q1750Q 0.37 TCGA-FW-A3R5-06 3 108117950 108117950 G A MYH15 Missense_Mutation p.S1654F 0.28 deleterious(0.04) probably_damaging(0.95) TCGA-FW-A3R5-06 3 108124224 108124224 C T MYH15 Missense_Mutation p.R1586K 0.45 tolerated(0.07) benign(0.028) TCGA-FW-A3R5-06 3 108124267 108124267 G A MYH15 Missense_Mutation p.H1572Y 0.15 deleterious(0) benign(0.336) TCGA-FW-A3R5-06 3 108129689 108129689 C T MYH15 Silent p.Q1432Q 0.29 TCGA-FW-A3R5-06 3 108147413 108147413 C T MYH15 Missense_Mutation p.E1230K 0.34 deleterious(0) possibly_damaging(0.859) TCGA-FW-A3R5-06 3 108156452 108156452 C T MYH15 Missense_Mutation p.S1077N 0.20 tolerated(0.21) benign(0.009) TCGA-FW-A3R5-06 3 108156525 108156525 C T MYH15 Missense_Mutation p.E1053K 0.09 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 108175647 108175647 G A MYH15 Missense_Mutation p.P722S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 3 108178243 108178243 C T MYH15 Silent p.V682V 0.25 TCGA-FW-A3R5-06 3 108214637 108214637 G A MYH15 Missense_Mutation p.S254F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 108216912 108216912 G A MYH15 Missense_Mutation p.S222F 0.13 deleterious(0.02) possibly_damaging(0.657) TCGA-FW-A3R5-06 3 108278674 108278674 G A KIAA1524 Missense_Mutation p.A648V 0.24 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 3 108363052 108363052 C T DZIP3 Missense_Mutation p.H395Y 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 108367771 108367771 A T DZIP3 Missense_Mutation p.S657C 0.15 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-FW-A3R5-06 3 108475956 108475956 G A RETNLB Missense_Mutation p.S26F 0.35 deleterious(0) probably_damaging(0.917) TCGA-FW-A3R5-06 3 108541781 108541781 G A TRAT1 Missense_Mutation p.G3R 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 108549612 108549612 G A TRAT1 Missense_Mutation p.E35K 0.34 tolerated(0.43) probably_damaging(0.946) TCGA-FW-A3R5-06 3 108565964 108565964 G A TRAT1 Missense_Mutation p.D68N 0.17 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 3 108682331 108682331 C T MORC1 Missense_Mutation p.R910K 0.18 tolerated(0.06) possibly_damaging(0.897) TCGA-FW-A3R5-06 3 108690226 108690226 G A MORC1 Missense_Mutation p.P834L 0.26 deleterious(0) possibly_damaging(0.717) TCGA-FW-A3R5-06 3 108723676 108723676 C T MORC1 Silent p.L691L 0.26 TCGA-FW-A3R5-06 3 108754254 108754254 C T MORC1 Silent p.E464E 0.17 TCGA-FW-A3R5-06 3 108776277 108776277 C T MORC1 Missense_Mutation p.R363Q 0.17 tolerated(0.1) benign(0.067) TCGA-FW-A3R5-06 3 108782046 108782046 C T MORC1 Missense_Mutation p.G283E 0.13 tolerated(0.25) benign(0.085) TCGA-FW-A3R5-06 3 108813814 108813814 G A MORC1 Silent p.S175S 0.26 TCGA-FW-A3R5-06 3 108813853 108813853 C T MORC1 Silent p.Q162Q 0.24 TCGA-FW-A3R5-06 3 108818274 108818274 C T MORC1 Silent p.T118T 0.35 TCGA-FW-A3R5-06 3 108819293 108819293 G A MORC1 Silent p.F95F 0.29 TCGA-FW-A3R5-06 3 10885926 10885926 G A SLC6A11 Silent p.G217G 0.29 TCGA-FW-A3R5-06 3 109049587 109049587 C T DPPA4 Missense_Mutation p.E155K 0.24 tolerated(0.22) benign(0.015) TCGA-FW-A3R5-06 3 10916768 10916768 C T SLC6A11 Silent p.L293L 0.37 TCGA-FW-A3R5-06 3 10916776 10916776 C T SLC6A11 Missense_Mutation p.P296L 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-FW-A3R5-06 3 11058943 11058943 G A SLC6A1 Missense_Mutation p.E16K 0.22 tolerated(0.17) benign(0.014) TCGA-FW-A3R5-06 3 11059542 11059542 C T SLC6A1 Silent p.I84I 0.20 TCGA-FW-A3R5-06 3 11059584 11059584 C T SLC6A1 Silent p.F98F 0.29 TCGA-FW-A3R5-06 3 11060364 11060364 C T SLC6A1 Silent p.L151L 0.24 TCGA-FW-A3R5-06 3 11067176 11067176 C T SLC6A1 Silent p.I252I 0.38 TCGA-FW-A3R5-06 3 11067918 11067918 C T SLC6A1 Intron 0.32 TCGA-FW-A3R5-06 3 11067975 11067975 C T SLC6A1 Silent p.F336F 0.24 TCGA-FW-A3R5-06 3 11070974 11070974 G A SLC6A1 Missense_Mutation p.R420K 0.23 tolerated(0.22) benign(0.005) TCGA-FW-A3R5-06 3 11071021 11071021 C T SLC6A1 Missense_Mutation p.L436F 0.17 tolerated(0.08) benign(0.162) TCGA-FW-A3R5-06 3 11078583 11078583 C T SLC6A1 Silent p.I577I 0.30 TCGA-FW-A3R5-06 3 11078587 11078587 C T SLC6A1 Missense_Mutation p.R579C 0.30 tolerated(0.14) benign(0.002) TCGA-FW-A3R5-06 3 111304210 111304210 G A CD96 Silent p.T280T 0.26 TCGA-FW-A3R5-06 3 111343190 111343190 C T CD96 Silent p.S436S 0.21 TCGA-FW-A3R5-06 3 111394212 111394212 C T PLCXD2 Silent p.P40P 0.22 TCGA-FW-A3R5-06 3 111426819 111426819 G A PLCXD2 Silent p.V70V 0.28 TCGA-FW-A3R5-06 3 111432842 111432842 C T PLCXD2 Missense_Mutation p.L245F 0.30 deleterious(0.03) benign(0.328) TCGA-FW-A3R5-06 3 111564690 111564690 C T PLCXD2 3'UTR 0.25 TCGA-FW-A3R5-06 3 111564691 111564691 C T PLCXD2 3'UTR 0.24 TCGA-FW-A3R5-06 3 111603012 111603012 G A PHLDB2 Missense_Mutation p.D30N 0.30 tolerated_low_confidence(0.31) benign(0.003) TCGA-FW-A3R5-06 3 111603157 111603157 G A PHLDB2 Missense_Mutation p.S78N 0.09 tolerated_low_confidence(0.12) benign(0.005) TCGA-FW-A3R5-06 3 111632685 111632685 C T PHLDB2 Intron 0.32 TCGA-FW-A3R5-06 3 111667826 111667826 G A PHLDB2 Silent p.T845T 0.32 TCGA-FW-A3R5-06 3 111671488 111671488 C T PHLDB2 Nonsense_Mutation p.R901* 0.27 TCGA-FW-A3R5-06 3 111693359 111693359 G A PHLDB2 Nonsense_Mutation p.W1237* 0.08 TCGA-FW-A3R5-06 3 111766711 111766711 C T TMPRSS7 Missense_Mutation p.R160C 0.38 deleterious(0.05) probably_damaging(0.988) TCGA-FW-A3R5-06 3 111769563 111769563 G A TMPRSS7 Missense_Mutation p.G253E 0.27 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 3 111870807 111870807 C T SLC9C1 Missense_Mutation p.G1141R 0.39 tolerated_low_confidence(0.48) benign(0.035) TCGA-FW-A3R5-06 3 111962889 111962889 G A SLC9C1 Missense_Mutation p.T411I 0.20 deleterious(0) possibly_damaging(0.732) TCGA-FW-A3R5-06 3 111981908 111981908 G A SLC9C1 Nonsense_Mutation p.R354* 0.28 TCGA-FW-A3R5-06 3 111997701 111997701 G A SLC9C1 Nonsense_Mutation p.Q65* 0.26 TCGA-FW-A3R5-06 3 112251591 112251591 G A ATG3 Silent p.V300V 0.37 TCGA-FW-A3R5-06 3 112358111 112358111 C T CCDC80 Silent p.L214L 0.12 TCGA-FW-A3R5-06 3 112534664 112534664 C T CD200R1L 3'UTR 0.19 TCGA-FW-A3R5-06 3 112534791 112534791 G A CD200R1L 3'UTR 0.16 TCGA-FW-A3R5-06 3 112545989 112545989 C T CD200R1L Missense_Mutation p.G177E 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 112648052 112648052 G A CD200R1 Missense_Mutation p.H169Y 0.15 tolerated(0.09) probably_damaging(0.943) TCGA-FW-A3R5-06 3 112648064 112648064 G A CD200R1 Missense_Mutation p.H165Y 0.27 tolerated(0.76) possibly_damaging(0.492) TCGA-FW-A3R5-06 3 112648300 112648300 G A CD200R1 Missense_Mutation p.P86L 0.17 tolerated(0.17) benign(0.09) TCGA-FW-A3R5-06 3 112693694 112693694 G A CD200R1 Missense_Mutation p.P4L 0.15 tolerated(0.35) probably_damaging(0.991) TCGA-FW-A3R5-06 3 112738516 112738516 A G C3orf17 5'UTR 0.25 TCGA-FW-A3R5-06 3 112969698 112969698 C T BOC Intron 0.32 TCGA-FW-A3R5-06 3 112989677 112989677 C T BOC Missense_Mutation p.L185F 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 112998264 112998264 C T BOC Missense_Mutation p.P661L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 11300694 11300694 G A HRH1 5'UTR 0.30 TCGA-FW-A3R5-06 3 11300809 11300809 C T HRH1 Missense_Mutation p.P29L 0.29 tolerated(0.19) possibly_damaging(0.542) TCGA-FW-A3R5-06 3 11301398 11301398 G A HRH1 Silent p.E225E 0.30 TCGA-FW-A3R5-06 3 11301413 11301413 C T HRH1 Silent p.S230S 0.34 TCGA-FW-A3R5-06 3 11301421 11301421 C T HRH1 Missense_Mutation p.S233F 0.13 deleterious(0.05) benign(0.144) TCGA-FW-A3R5-06 3 11301489 11301489 C T HRH1 Missense_Mutation p.P256S 0.36 tolerated(0.43) benign(0.026) TCGA-FW-A3R5-06 3 11302032 11302032 G A HRH1 Missense_Mutation p.V437I 0.24 tolerated(0.08) probably_damaging(0.992) TCGA-FW-A3R5-06 3 11302087 11302087 G A HRH1 Nonsense_Mutation p.W455* 0.16 TCGA-FW-A3R5-06 3 113084920 113084920 C T WDR52 Missense_Mutation p.R894K 0.25 tolerated(0.94) benign(0.002) TCGA-FW-A3R5-06 3 113138932 113138932 G A WDR52 Silent p.L168L 0.20 TCGA-FW-A3R5-06 3 113218404 113218404 G A SPICE1 Missense_Mutation p.S58L 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 113286461 113286461 C T SIDT1 Missense_Mutation p.P140L 0.24 tolerated(0.17) benign(0.002) TCGA-FW-A3R5-06 3 113304061 113304061 C T SIDT1 Silent p.F315F 0.24 TCGA-FW-A3R5-06 3 113375047 113375047 G A KIAA2018 Missense_Mutation p.L1828F 0.21 possibly_damaging(0.862) TCGA-FW-A3R5-06 3 113375885 113375885 G A KIAA2018 Silent p.S1548S 0.17 TCGA-FW-A3R5-06 3 113376321 113376321 G A KIAA2018 Missense_Mutation p.P1403L 0.21 probably_damaging(0.999) TCGA-FW-A3R5-06 3 113377563 113377563 G A KIAA2018 Missense_Mutation p.S989L 0.21 benign(0.069) TCGA-FW-A3R5-06 3 113377997 113377997 G A KIAA2018 Silent p.F844F 0.24 TCGA-FW-A3R5-06 3 113588364 113588364 C T GRAMD1C Missense_Mutation p.S62F 0.28 deleterious(0) benign(0.259) TCGA-FW-A3R5-06 3 113672617 113672617 C T ZDHHC23 Nonsense_Mutation p.R78* 0.29 TCGA-FW-A3R5-06 3 113955468 113955468 G A ZNF80 Missense_Mutation p.R152C 0.22 deleterious(0.02) possibly_damaging(0.608) TCGA-FW-A3R5-06 3 114057955 114057955 G A ZBTB20 Missense_Mutation p.A708V 0.32 deleterious_low_confidence(0.03) benign(0.027) TCGA-FW-A3R5-06 3 114058095 114058095 G A ZBTB20 Silent p.S661S 0.08 TCGA-FW-A3R5-06 3 114070414 114070414 G A ZBTB20 Silent p.L171L 0.39 TCGA-FW-A3R5-06 3 115394878 115394878 G A GAP43 Missense_Mutation p.D53N 0.35 deleterious(0.03) probably_damaging(0.968) TCGA-FW-A3R5-06 3 115395442 115395442 G A GAP43 Missense_Mutation p.A241T 0.27 tolerated(0.63) probably_damaging(0.921) TCGA-FW-A3R5-06 3 115439652 115439652 G A GAP43 Missense_Mutation p.E250K 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-FW-A3R5-06 3 115439700 115439700 G A GAP43 Missense_Mutation p.E266K 0.06 deleterious(0.01) possibly_damaging(0.476) TCGA-FW-A3R5-06 3 115805287 115805287 G A LSAMP Missense_Mutation p.S91F 0.18 deleterious(0.02) benign(0.361) TCGA-FW-A3R5-06 3 11712827 11712827 G A VGLL4 5'UTR 0.32 TCGA-FW-A3R5-06 3 118621455 118621455 G A IGSF11 Missense_Mutation p.S403F 0.28 deleterious(0) possibly_damaging(0.766) TCGA-FW-A3R5-06 3 118824028 118824028 C T IGSF11 Silent p.V4V 0.15 TCGA-FW-A3R5-06 3 118865039 118865039 G A C3orf30 Translation_Start_Site p.M1? 0.19 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 118865121 118865121 G A C3orf30 Missense_Mutation p.G29S 0.29 tolerated(0.37) benign(0.198) TCGA-FW-A3R5-06 3 118866123 118866123 T C C3orf30 Missense_Mutation p.Y363H 0.25 deleterious(0.05) probably_damaging(0.986) TCGA-FW-A3R5-06 3 118867030 118867030 G A C3orf30 Missense_Mutation p.E468K 0.27 deleterious(0.03) possibly_damaging(0.801) TCGA-FW-A3R5-06 3 118909895 118909895 G A UPK1B Missense_Mutation p.D138N 0.32 tolerated(0.33) benign(0.133) TCGA-FW-A3R5-06 3 118909934 118909934 G A UPK1B Missense_Mutation p.D151N 0.30 tolerated(0.78) benign(0.007) TCGA-FW-A3R5-06 3 1189698 1189698 G A CNTN6 Silent p.R2R 0.10 TCGA-FW-A3R5-06 3 119263605 119263605 C T CD80 Silent p.K70K 0.21 TCGA-FW-A3R5-06 3 119305142 119305142 G A ADPRH Silent p.S103S 0.08 TCGA-FW-A3R5-06 3 119305206 119305206 C T ADPRH Missense_Mutation p.H125Y 0.31 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 3 119325618 119325618 C T PLA1A Intron 0.29 TCGA-FW-A3R5-06 3 119434453 119434453 C T MAATS1 Missense_Mutation p.S182F 0.27 tolerated(0.78) benign(0.002) TCGA-FW-A3R5-06 3 119451284 119451284 G A MAATS1 Missense_Mutation p.D388N 0.24 tolerated(0.61) benign(0.001) TCGA-FW-A3R5-06 3 119463029 119463029 G A MAATS1 Missense_Mutation p.E630K 0.30 deleterious(0.03) benign(0.107) TCGA-FW-A3R5-06 3 119535955 119535955 C T NR1I2 Missense_Mutation p.R440C 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 119886646 119886646 G A GPR156 Missense_Mutation p.P560S 0.32 tolerated(0.29) benign(0.014) TCGA-FW-A3R5-06 3 119892174 119892174 C T GPR156 Silent p.E359E 0.28 TCGA-FW-A3R5-06 3 119911838 119911838 T A GPR156 Missense_Mutation p.K141M 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 120053973 120053973 G A LRRC58 Missense_Mutation p.R215C 0.22 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 3 120114550 120114550 G A FSTL1 3'UTR 0.18 TCGA-FW-A3R5-06 3 120319969 120319969 C T NDUFB4 Silent p.A64A 0.24 TCGA-FW-A3R5-06 3 120347180 120347180 G A HGD 3'UTR 0.29 TCGA-FW-A3R5-06 3 120363267 120363267 G A HGD Missense_Mutation p.R225C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 120371457 120371457 C T HGD Silent p.K108K 0.19 TCGA-FW-A3R5-06 3 120389297 120389297 C T HGD Missense_Mutation p.E87K 0.23 tolerated(0.3) benign(0.028) TCGA-FW-A3R5-06 3 120764309 120764309 G A STXBP5L Missense_Mutation p.D133N 0.09 deleterious(0.01) possibly_damaging(0.455) TCGA-FW-A3R5-06 3 120871407 120871407 G A STXBP5L Silent p.E251E 0.33 TCGA-FW-A3R5-06 3 120876350 120876350 G A STXBP5L Splice_Site p.X252_splice 0.24 TCGA-FW-A3R5-06 3 120969581 120969581 G A STXBP5L Missense_Mutation p.G471E 0.24 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 3 120969584 120969584 C T STXBP5L Missense_Mutation p.S472L 0.24 deleterious(0.01) possibly_damaging(0.482) TCGA-FW-A3R5-06 3 121304974 121304974 C T ARGFX Missense_Mutation p.P159S 0.37 tolerated(0.45) possibly_damaging(0.709) TCGA-FW-A3R5-06 3 121340447 121340447 C T FBXO40 Silent p.L57L 0.27 TCGA-FW-A3R5-06 3 121340705 121340705 G A FBXO40 Missense_Mutation p.M143I 0.21 tolerated(0.08) benign(0.251) TCGA-FW-A3R5-06 3 121340778 121340778 G A FBXO40 Missense_Mutation p.E168K 0.27 tolerated(0.12) benign(0.197) TCGA-FW-A3R5-06 3 121340788 121340788 G A FBXO40 Missense_Mutation p.G171E 0.35 tolerated(0.09) possibly_damaging(0.674) TCGA-FW-A3R5-06 3 121341592 121341592 C T FBXO40 Missense_Mutation p.S439F 0.25 deleterious(0.01) possibly_damaging(0.785) TCGA-FW-A3R5-06 3 121341852 121341852 C T FBXO40 Missense_Mutation p.R526C 0.22 tolerated(0.21) benign(0.008) TCGA-FW-A3R5-06 3 121345843 121345843 C T FBXO40 3'UTR 0.50 TCGA-FW-A3R5-06 3 121350818 121350818 C T HCLS1 Missense_Mutation p.E446K 0.26 deleterious(0) possibly_damaging(0.621) TCGA-FW-A3R5-06 3 121353122 121353122 G A HCLS1 Missense_Mutation p.P279S 0.24 tolerated(0.31) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 121356074 121356074 C T HCLS1 Missense_Mutation p.G162R 0.24 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 121410779 121410779 G A GOLGB1 Nonsense_Mutation p.R2478* 0.11 TCGA-FW-A3R5-06 3 121591511 121591511 C T EAF2 Silent p.S204S 0.14 TCGA-FW-A3R5-06 3 121630439 121630439 C T SLC15A2 Silent p.S118S 0.28 TCGA-FW-A3R5-06 3 121643197 121643197 G A SLC15A2 Splice_Site p.X335_splice 0.25 TCGA-FW-A3R5-06 3 121647268 121647268 G A SLC15A2 Missense_Mutation p.E403K 0.23 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 3 121659731 121659731 C T SLC15A2 Silent p.F689F 0.32 TCGA-FW-A3R5-06 3 121712534 121712534 G A ILDR1 Silent p.L354L 0.29 TCGA-FW-A3R5-06 3 121838421 121838421 C T CD86 3'UTR 0.25 TCGA-FW-A3R5-06 3 12192799 12192799 G A TIMP4 3'Flank 0.17 TCGA-FW-A3R5-06 3 121973125 121973125 G A CASR Missense_Mutation p.G30E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 121976229 121976229 C T CASR Missense_Mutation p.P163S 0.21 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 3 121980436 121980436 G A CASR Missense_Mutation p.R185Q 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 121981017 121981017 G A CASR Missense_Mutation p.E379K 0.33 tolerated(0.29) benign(0.006) TCGA-FW-A3R5-06 3 121981045 121981045 C T CASR Missense_Mutation p.S388L 0.12 tolerated(0.07) benign(0.118) TCGA-FW-A3R5-06 3 122001064 122001064 G A CASR Silent p.G581G 0.29 TCGA-FW-A3R5-06 3 122001066 122001066 A T CASR Missense_Mutation p.E582V 0.28 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 3 122002628 122002628 G A CASR Silent p.T619T 0.19 TCGA-FW-A3R5-06 3 122003043 122003043 C T CASR Missense_Mutation p.P758S 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 122003483 122003483 C T CASR Silent p.V904V 0.39 TCGA-FW-A3R5-06 3 122003723 122003723 C T CASR Silent p.T984T 0.24 TCGA-FW-A3R5-06 3 122003771 122003771 G A CASR Silent p.R1000R 0.26 TCGA-FW-A3R5-06 3 122003933 122003933 G A CASR Silent p.V1054V 0.23 TCGA-FW-A3R5-06 3 122004137 122004137 G A CASR 3'UTR 0.26 TCGA-FW-A3R5-06 3 12203533 12203533 G A TIMP4 5'Flank 0.40 TCGA-FW-A3R5-06 3 122044135 122044135 C T CSTA 5'UTR 0.18 TCGA-FW-A3R5-06 3 12211262 12211262 G A SYN2 RNA 0.29 TCGA-FW-A3R5-06 3 122247235 122247235 G A PARP9 Silent p.F847F 0.31 TCGA-FW-A3R5-06 3 122287651 122287651 C T DTX3L Missense_Mutation p.P239S 0.26 tolerated(0.13) benign(0.063) TCGA-FW-A3R5-06 3 122420051 122420051 C T PARP14 Missense_Mutation p.R884C 0.27 deleterious(0.01) benign(0.06) TCGA-FW-A3R5-06 3 122437790 122437790 C T PARP14 Missense_Mutation p.L1598F 0.17 tolerated(0.25) benign(0.029) TCGA-FW-A3R5-06 3 122525735 122525735 C T DIRC2 Silent p.F125F 0.31 TCGA-FW-A3R5-06 3 122598136 122598136 C T DIRC2 Missense_Mutation p.P450S 0.34 tolerated(0.1) benign(0.069) TCGA-FW-A3R5-06 3 122631747 122631747 G A SEMA5B Silent p.L944L 0.36 TCGA-FW-A3R5-06 3 122632215 122632215 C T SEMA5B Nonsense_Mutation p.W833* 0.27 TCGA-FW-A3R5-06 3 122632266 122632266 G A SEMA5B Silent p.F816F 0.33 TCGA-FW-A3R5-06 3 122632737 122632737 G A SEMA5B Silent p.G754G 0.32 TCGA-FW-A3R5-06 3 122632771 122632771 C T SEMA5B Missense_Mutation p.R743Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 122634644 122634644 C T SEMA5B Nonsense_Mutation p.W648* 0.19 TCGA-FW-A3R5-06 3 122667443 122667443 G A SEMA5B Missense_Mutation p.H134Y 0.19 tolerated_low_confidence(0.06) benign(0.094) TCGA-FW-A3R5-06 3 123019002 123019002 G A ADCY5 Silent p.F955F 0.19 TCGA-FW-A3R5-06 3 123019089 123019089 C T ADCY5 Silent p.Q926Q 0.30 TCGA-FW-A3R5-06 3 123021952 123021952 C T ADCY5 Missense_Mutation p.D892N 0.31 tolerated(0.31) benign(0.006) TCGA-FW-A3R5-06 3 123022953 123022953 G A ADCY5 Silent p.F840F 0.23 TCGA-FW-A3R5-06 3 123036904 123036904 G A ADCY5 Missense_Mutation p.L773F 0.07 tolerated(0.2) benign(0.013) TCGA-FW-A3R5-06 3 123038613 123038613 G A ADCY5 Missense_Mutation p.R722C 0.22 deleterious(0.02) possibly_damaging(0.864) TCGA-FW-A3R5-06 3 123039618 123039618 C T ADCY5 Missense_Mutation p.G697S 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 3 123332988 123332988 C T MYLK Silent p.E1903E 0.10 TCGA-FW-A3R5-06 3 123345767 123345767 C T MYLK Silent p.Q1712Q 0.14 TCGA-FW-A3R5-06 3 123419462 123419462 G A MYLK Silent p.V951V 0.33 TCGA-FW-A3R5-06 3 123428651 123428651 G A MYLK Missense_Mutation p.L632F 0.17 deleterious(0.03) benign(0.305) TCGA-FW-A3R5-06 3 123451818 123451818 C T MYLK Missense_Mutation p.D481N 0.18 deleterious(0.03) benign(0.288) TCGA-FW-A3R5-06 3 123452725 123452725 C T MYLK Missense_Mutation p.R373K 0.28 tolerated(0.3) benign(0.044) TCGA-FW-A3R5-06 3 123456259 123456259 C T MYLK Silent p.G240G 0.32 TCGA-FW-A3R5-06 3 123457790 123457790 G A MYLK Missense_Mutation p.S181F 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-FW-A3R5-06 3 123953720 123953720 C T KALRN Missense_Mutation p.R63C 0.35 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 3 123987692 123987692 G A KALRN Missense_Mutation p.E185K 0.25 deleterious(0.03) benign(0.432) TCGA-FW-A3R5-06 3 124117644 124117644 G A KALRN Missense_Mutation p.E756K 0.27 deleterious(0.02) benign(0.037) TCGA-FW-A3R5-06 3 124117716 124117716 G A KALRN Missense_Mutation p.E780K 0.08 deleterious(0.01) benign(0.23) TCGA-FW-A3R5-06 3 124181467 124181467 G A KALRN Missense_Mutation p.D1338N 0.17 tolerated(0.18) benign(0.058) TCGA-FW-A3R5-06 3 124193559 124193559 G A KALRN Missense_Mutation p.G1359R 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 124201687 124201687 C T KALRN Silent p.S1406S 0.10 TCGA-FW-A3R5-06 3 124207135 124207135 G A KALRN Missense_Mutation p.D1455N 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 3 124210210 124210210 C T KALRN Missense_Mutation p.P1541L 0.23 deleterious(0) benign(0.356) TCGA-FW-A3R5-06 3 124237370 124237370 C T KALRN 3'UTR 0.39 TCGA-FW-A3R5-06 3 124281801 124281801 G A KALRN Missense_Mutation p.E54K 0.22 deleterious(0.01) benign(0.245) TCGA-FW-A3R5-06 3 124303686 124303686 G A KALRN Silent p.R6R 0.36 TCGA-FW-A3R5-06 3 124351406 124351406 G A KALRN Silent p.T75T 0.17 TCGA-FW-A3R5-06 3 124351444 124351444 G A KALRN Missense_Mutation p.G88E 0.36 deleterious(0.01) benign(0.318) TCGA-FW-A3R5-06 3 124369665 124369665 G A KALRN Missense_Mutation p.G162E 0.22 tolerated(0.11) benign(0.126) TCGA-FW-A3R5-06 3 124385898 124385898 C T KALRN Missense_Mutation p.P282S 0.27 deleterious(0.02) possibly_damaging(0.707) TCGA-FW-A3R5-06 3 124393367 124393367 G A KALRN Missense_Mutation p.D707N 0.32 deleterious(0.04) benign(0.17) TCGA-FW-A3R5-06 3 124397119 124397119 C T KALRN Missense_Mutation p.R697C 0.21 deleterious(0) possibly_damaging(0.878) TCGA-FW-A3R5-06 3 124437990 124437990 C T RP11-71H17.7 5'Flank 0.37 TCGA-FW-A3R5-06 3 124438117 124438117 G A RP11-71H17.7 5'Flank 0.15 TCGA-FW-A3R5-06 3 124449234 124449234 G A UMPS 5'UTR 0.38 TCGA-FW-A3R5-06 3 124515299 124515299 G A ITGB5 Silent p.I543I 0.13 TCGA-FW-A3R5-06 3 124515320 124515320 G A ITGB5 Silent p.F536F 0.24 TCGA-FW-A3R5-06 3 124627180 124627180 C T MUC13 Silent p.T450T 0.31 TCGA-FW-A3R5-06 3 124731866 124731866 G A HEG1 Missense_Mutation p.L853F 0.15 tolerated(0.52) benign(0.26) TCGA-FW-A3R5-06 3 124739717 124739717 G A HEG1 Missense_Mutation p.P391S 0.26 tolerated(0.21) possibly_damaging(0.454) TCGA-FW-A3R5-06 3 124810341 124810341 C T SLC12A8 Missense_Mutation p.M621I 0.17 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 3 124810354 124810354 G A SLC12A8 Missense_Mutation p.T617I 0.27 deleterious(0) possibly_damaging(0.774) TCGA-FW-A3R5-06 3 124896607 124896607 G A SLC12A8 Missense_Mutation p.S201F 0.40 deleterious(0.04) possibly_damaging(0.464) TCGA-FW-A3R5-06 3 124952521 124952521 G A ZNF148 Missense_Mutation p.S350F 0.21 deleterious(0.02) possibly_damaging(0.467) TCGA-FW-A3R5-06 3 125831637 125831637 G A ALDH1L1 Silent p.F733F 0.21 TCGA-FW-A3R5-06 3 125833454 125833454 C T ALDH1L1 Silent p.G686G 0.31 TCGA-FW-A3R5-06 3 125836936 125836936 G A ALDH1L1 Silent p.L642L 0.10 TCGA-FW-A3R5-06 3 125844486 125844486 C T ALDH1L1 Silent p.G601G 0.25 TCGA-FW-A3R5-06 3 125856770 125856770 G A ALDH1L1 Silent p.G380G 0.23 TCGA-FW-A3R5-06 3 125872343 125872343 G A ALDH1L1 Missense_Mutation p.R278W 0.29 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-FW-A3R5-06 3 125874326 125874326 G A ALDH1L1 Silent p.I193I 0.32 TCGA-FW-A3R5-06 3 125876306 125876306 C T ALDH1L1 Nonsense_Mutation p.W146* 0.21 TCGA-FW-A3R5-06 3 125877456 125877456 G A ALDH1L1 Missense_Mutation p.P62S 0.13 deleterious_low_confidence(0.02) benign(0.423) TCGA-FW-A3R5-06 3 126132960 126132960 C T CCDC37 Missense_Mutation p.H55Y 0.23 tolerated(0.06) benign(0.374) TCGA-FW-A3R5-06 3 126138986 126138986 G A CCDC37 Silent p.T332T 0.23 TCGA-FW-A3R5-06 3 126153184 126153184 G A CCDC37 Missense_Mutation p.E530K 0.20 tolerated(0.05) probably_damaging(0.943) TCGA-FW-A3R5-06 3 126208158 126208158 C T UROC1 Missense_Mutation p.E617K 0.20 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 3 126208159 126208159 C T UROC1 Silent p.R616R 0.20 TCGA-FW-A3R5-06 3 126208199 126208199 C T UROC1 Missense_Mutation p.R603Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 126219633 126219633 G A UROC1 Silent p.F410F 0.32 TCGA-FW-A3R5-06 3 126219690 126219690 C T UROC1 Silent p.T391T 0.17 TCGA-FW-A3R5-06 3 126224649 126224649 G A UROC1 Silent p.I236I 0.25 TCGA-FW-A3R5-06 3 126226912 126226912 C T UROC1 Silent p.S146S 0.13 TCGA-FW-A3R5-06 3 126261247 126261247 C T CHST13 Silent p.S284S 0.42 TCGA-FW-A3R5-06 3 126261284 126261284 G A CHST13 Missense_Mutation p.A297T 0.33 tolerated(1) benign(0.021) TCGA-FW-A3R5-06 3 126386152 126386152 C T NUP210P1 RNA 0.30 TCGA-FW-A3R5-06 3 12660110 12660110 G A RAF1 Silent p.G37G 0.29 TCGA-FW-A3R5-06 3 126916055 126916055 G A C3orf56 Missense_Mutation p.G176E 0.33 tolerated(0.13) probably_damaging(0.969) TCGA-FW-A3R5-06 3 126916318 126916318 G A C3orf56 3'UTR 0.29 TCGA-FW-A3R5-06 3 127323759 127323759 G A MCM2 Missense_Mutation p.E145K 0.36 tolerated(0.43) benign(0.005) TCGA-FW-A3R5-06 3 127340602 127340602 C T MCM2 Silent p.L901L 0.25 TCGA-FW-A3R5-06 3 127358154 127358154 C T PODXL2 Missense_Mutation p.S46F 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 127379289 127379289 C T PODXL2 Missense_Mutation p.P140S 0.17 tolerated(0.44) benign(0.017) TCGA-FW-A3R5-06 3 127379290 127379290 C T PODXL2 Missense_Mutation p.P140L 0.18 tolerated(0.18) benign(0.006) TCGA-FW-A3R5-06 3 127399628 127399628 C T ABTB1 3'UTR 0.24 TCGA-FW-A3R5-06 3 127399629 127399629 C T ABTB1 3'UTR 0.22 TCGA-FW-A3R5-06 3 127454584 127454584 C T MGLL Intron 0.25 TCGA-FW-A3R5-06 3 127541241 127541241 G A MGLL 5'UTR 0.42 TCGA-FW-A3R5-06 3 127541244 127541244 G A MGLL 5'UTR 0.26 TCGA-FW-A3R5-06 3 127642053 127642053 C T KBTBD12 Missense_Mutation p.A50V 0.31 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 3 127646621 127646621 G A KBTBD12 Missense_Mutation p.G362E 0.26 tolerated(0.74) benign(0.102) TCGA-FW-A3R5-06 3 127783766 127783766 C T SEC61A1 Silent p.A221A 0.18 TCGA-FW-A3R5-06 3 12780058 12780058 C T TMEM40 Missense_Mutation p.E129K 0.27 deleterious(0) possibly_damaging(0.848) TCGA-FW-A3R5-06 3 128181281 128181281 G A DNAJB8 3'Flank 0.22 TCGA-FW-A3R5-06 3 128181420 128181420 C T DNAJB8 Silent p.K223K 0.34 TCGA-FW-A3R5-06 3 128181482 128181482 C T DNAJB8 Missense_Mutation p.G203R 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 3 128181538 128181538 G A DNAJB8 Missense_Mutation p.S184L 0.34 deleterious(0) benign(0.204) TCGA-FW-A3R5-06 3 128200709 128200709 C T GATA2 Missense_Mutation p.G366R 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 128292629 128292629 G A C3orf27 5'UTR 0.33 TCGA-FW-A3R5-06 3 12845054 12845054 G A CAND2 Missense_Mutation p.E46K 0.15 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 12856867 12856867 G A CAND2 Missense_Mutation p.G412R 0.28 deleterious(0.05) probably_damaging(0.917) TCGA-FW-A3R5-06 3 128631576 128631576 C T ACAD9 3'UTR 0.29 TCGA-FW-A3R5-06 3 128780587 128780587 C T GP9 Missense_Mutation p.P2L 0.26 tolerated_low_confidence(0.11) benign(0.009) TCGA-FW-A3R5-06 3 128780787 128780787 G A GP9 Missense_Mutation p.G69R 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 128987836 128987836 C T COPG1 Silent p.I612I 0.22 TCGA-FW-A3R5-06 3 129123150 129123150 G A EFCAB12 Missense_Mutation p.S449F 0.26 tolerated(0.52) possibly_damaging(0.61) TCGA-FW-A3R5-06 3 129123158 129123158 C T EFCAB12 Silent p.K446K 0.29 TCGA-FW-A3R5-06 3 129127538 129127538 T C EFCAB12 Missense_Mutation p.K400R 0.31 tolerated(0.22) possibly_damaging(0.584) TCGA-FW-A3R5-06 3 129137225 129137225 G A EFCAB12 Missense_Mutation p.P185S 0.25 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 3 129168726 129168726 C T IFT122 Silent p.I18I 0.27 TCGA-FW-A3R5-06 3 129185811 129185811 C T IFT122 Silent p.I265I 0.20 TCGA-FW-A3R5-06 3 129198739 129198739 C T IFT122 Missense_Mutation p.L539F 0.32 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 3 129207226 129207226 G A IFT122 Missense_Mutation p.E711K 0.18 tolerated(0.18) possibly_damaging(0.713) TCGA-FW-A3R5-06 3 129237967 129237967 C T IFT122 Silent p.L1188L 0.23 TCGA-FW-A3R5-06 3 129247525 129247525 C T RHO 5'UTR 0.36 TCGA-FW-A3R5-06 3 129249780 129249780 G A RHO Silent p.K141K 0.21 TCGA-FW-A3R5-06 3 129251120 129251120 C T RHO Missense_Mutation p.S186L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 129267841 129267841 C T H1FOO Intron 0.12 TCGA-FW-A3R5-06 3 129267879 129267879 G A H1FOO Silent p.R138R 0.11 TCGA-FW-A3R5-06 3 129276019 129276019 G A PLXND1 Silent p.Y1831Y 0.28 TCGA-FW-A3R5-06 3 129276034 129276034 C T PLXND1 Silent p.K1826K 0.23 TCGA-FW-A3R5-06 3 129278591 129278591 C T PLXND1 Silent p.K1723K 0.18 TCGA-FW-A3R5-06 3 129279547 129279547 C T PLXND1 Silent p.E1671E 0.27 TCGA-FW-A3R5-06 3 129281993 129281993 G A PLXND1 Missense_Mutation p.R1538C 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 129284780 129284780 G A PLXND1 Silent p.I1424I 0.09 TCGA-FW-A3R5-06 3 129694861 129694861 G A TRH Missense_Mutation p.E68K 0.37 tolerated(0.19) benign(0.015) TCGA-FW-A3R5-06 3 12983267 12983267 G A IQSEC1 Missense_Mutation p.P55L 0.26 tolerated_low_confidence(0.06) benign(0.035) TCGA-FW-A3R5-06 3 130095457 130095457 G A COL6A5 Missense_Mutation p.E149K 0.37 deleterious(0.03) benign(0.007) TCGA-FW-A3R5-06 3 130162345 130162345 G A COL6A5 Silent p.P2171P 0.29 TCGA-FW-A3R5-06 3 130162359 130162359 C T COL6A5 Missense_Mutation p.A2176V 0.26 tolerated(0.27) benign(0.091) TCGA-FW-A3R5-06 3 130187704 130187704 C T COL6A5 Nonsense_Mutation p.Q2286* 0.31 TCGA-FW-A3R5-06 3 130187862 130187862 C T COL6A5 Silent p.V2338V 0.24 TCGA-FW-A3R5-06 3 130202939 130202939 C T COL6A5 3'UTR 0.60 TCGA-FW-A3R5-06 3 130282158 130282158 C T COL6A6 Missense_Mutation p.S104F 0.18 deleterious(0) probably_damaging(0.912) TCGA-FW-A3R5-06 3 130282378 130282378 G A COL6A6 Missense_Mutation p.M177I 0.10 tolerated(0.18) benign(0.047) TCGA-FW-A3R5-06 3 130283963 130283963 G A COL6A6 Missense_Mutation p.E263K 0.21 tolerated(0.3) probably_damaging(0.998) TCGA-FW-A3R5-06 3 130284070 130284070 C T COL6A6 Silent p.N298N 0.17 TCGA-FW-A3R5-06 3 130285592 130285592 C T COL6A6 Silent p.G443G 0.17 TCGA-FW-A3R5-06 3 130286970 130286970 G A COL6A6 Missense_Mutation p.M641I 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-FW-A3R5-06 3 130290201 130290201 G A COL6A6 Missense_Mutation p.D981N 0.32 tolerated(0.93) benign(0.198) TCGA-FW-A3R5-06 3 130292831 130292831 C T COL6A6 Silent p.F1003F 0.22 TCGA-FW-A3R5-06 3 130292832 130292832 C T COL6A6 Missense_Mutation p.L1004F 0.23 tolerated(0.08) probably_damaging(1) TCGA-FW-A3R5-06 3 130292924 130292924 C T COL6A6 Silent p.L1034L 0.26 TCGA-FW-A3R5-06 3 130293171 130293171 G A COL6A6 Missense_Mutation p.E1117K 0.23 tolerated(0.2) possibly_damaging(0.782) TCGA-FW-A3R5-06 3 130308020 130308020 G A COL6A6 Silent p.G1404G 0.26 TCGA-FW-A3R5-06 3 130312089 130312089 G A COL6A6 Missense_Mutation p.G1488E 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 130383928 130383928 G A COL6A6 Missense_Mutation p.R2195Q 0.29 tolerated_low_confidence(0.28) benign(0.001) TCGA-FW-A3R5-06 3 130682871 130682871 C T ATP2C1 Missense_Mutation p.A353V 0.33 tolerated(0.21) probably_damaging(0.999) TCGA-FW-A3R5-06 3 130712923 130712923 G A ATP2C1 Missense_Mutation p.D714N 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 130743962 130743962 G A ASTE1 Silent p.F63F 0.11 TCGA-FW-A3R5-06 3 131068673 131068673 C T NEK11 3'UTR 0.32 TCGA-FW-A3R5-06 3 131261477 131261477 C T CPNE4 Missense_Mutation p.G488E 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 3 131283082 131283082 C T CPNE4 Missense_Mutation p.E347K 0.34 tolerated(0.07) probably_damaging(0.995) TCGA-FW-A3R5-06 3 131415460 131415460 C T CPNE4 Missense_Mutation p.V145M 0.24 deleterious(0) benign(0.28) TCGA-FW-A3R5-06 3 132047130 132047130 G A ACPP Missense_Mutation p.R47Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 3 132061443 132061443 C T ACPP Silent p.D201D 0.12 TCGA-FW-A3R5-06 3 132298345 132298345 G A ACAD11 Missense_Mutation p.S560F 0.19 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 3 132432006 132432006 G A NPHP3 Missense_Mutation p.S361F 0.49 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 3 133099443 133099443 G A TMEM108 Silent p.G296G 0.29 TCGA-FW-A3R5-06 3 133099913 133099913 G A TMEM108 Missense_Mutation p.G453E 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-FW-A3R5-06 3 133099974 133099974 C T TMEM108 Silent p.I473I 0.14 TCGA-FW-A3R5-06 3 133119161 133119161 C T BFSP2 Silent p.L78L 0.19 TCGA-FW-A3R5-06 3 13361447 13361447 G A NUP210 Silent p.F1733F 0.21 TCGA-FW-A3R5-06 3 13363279 13363279 G A NUP210 Silent p.L1658L 0.11 TCGA-FW-A3R5-06 3 13363724 13363724 G A NUP210 Silent p.F1628F 0.30 TCGA-FW-A3R5-06 3 13363829 13363829 G A NUP210 Silent p.T1593T 0.29 TCGA-FW-A3R5-06 3 133647250 133647250 G A C3orf36 Missense_Mutation p.S133F 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.683) TCGA-FW-A3R5-06 3 133654618 133654618 C T SLCO2A1 Missense_Mutation p.R605K 0.31 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 3 133667776 133667776 C T SLCO2A1 Missense_Mutation p.E301K 0.30 tolerated(0.35) benign(0.009) TCGA-FW-A3R5-06 3 133670172 133670172 G A SLCO2A1 Silent p.V247V 0.32 TCGA-FW-A3R5-06 3 133698359 133698359 C T SLCO2A1 Missense_Mutation p.S67N 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 13381426 13381426 G A NUP210 Silent p.I1133I 0.21 TCGA-FW-A3R5-06 3 13381784 13381784 G A NUP210 Silent p.F1081F 0.17 TCGA-FW-A3R5-06 3 133894509 133894509 G A RYK Missense_Mutation p.R508C 0.30 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 13399748 13399748 G A NUP210 Missense_Mutation p.P768S 0.19 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 134256002 134256002 C T CEP63 Silent p.F149F 0.32 TCGA-FW-A3R5-06 3 134256003 134256003 C T CEP63 Missense_Mutation p.R150C 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 134366313 134366313 G A KY Nonsense_Mutation p.R55* 0.43 TCGA-FW-A3R5-06 3 134369698 134369698 C T KY Silent p.A35A 0.31 TCGA-FW-A3R5-06 3 134670384 134670384 C T EPHB1 Missense_Mutation p.L99F 0.34 tolerated(0.09) possibly_damaging(0.616) TCGA-FW-A3R5-06 3 134670844 134670844 G A EPHB1 Missense_Mutation p.R252Q 0.27 tolerated(0.22) benign(0.018) TCGA-FW-A3R5-06 3 134920412 134920412 C T EPHB1 Missense_Mutation p.R743W 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 134920414 134920414 G A EPHB1 Silent p.R743R 0.24 TCGA-FW-A3R5-06 3 134968304 134968304 C T EPHB1 Silent p.S939S 0.21 TCGA-FW-A3R5-06 3 134968307 134968307 C T EPHB1 Silent p.L940L 0.11 TCGA-FW-A3R5-06 3 136062736 136062736 G A STAG1 Silent p.P1128P 0.23 TCGA-FW-A3R5-06 3 136062737 136062737 G C STAG1 Missense_Mutation p.P1128R 0.23 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 3 13612089 13612089 C T FBLN2 Silent p.F78F 0.30 TCGA-FW-A3R5-06 3 13613147 13613147 G A FBLN2 Missense_Mutation p.R431K 0.30 tolerated(0.15) possibly_damaging(0.737) TCGA-FW-A3R5-06 3 136573347 136573347 G A SLC35G2 Silent p.V15V 0.32 TCGA-FW-A3R5-06 3 136573671 136573671 G A SLC35G2 Silent p.R123R 0.25 TCGA-FW-A3R5-06 3 13659684 13659684 G A FBLN2 Missense_Mutation p.G613E 0.16 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 3 13660436 13660436 G A FBLN2 Missense_Mutation p.E658K 0.18 tolerated(0.15) benign(0.041) TCGA-FW-A3R5-06 3 13663341 13663341 G A FBLN2 Missense_Mutation p.G741E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 136708326 136708326 C T IL20RB Silent p.F150F 0.23 TCGA-FW-A3R5-06 3 136728968 136728968 C T IL20RB Missense_Mutation p.S280L 0.28 tolerated(0.22) benign(0.022) TCGA-FW-A3R5-06 3 1367606 1367606 T G CNTN6 Missense_Mutation p.L352V 0.37 deleterious(0) benign(0.425) TCGA-FW-A3R5-06 3 13678033 13678033 C T FBLN2 Silent p.F1101F 0.28 TCGA-FW-A3R5-06 3 137717743 137717743 C T CLDN18 Silent p.F11F 0.26 TCGA-FW-A3R5-06 3 137729064 137729064 G A CLDN18 5'UTR 0.47 TCGA-FW-A3R5-06 3 137749945 137749945 G A CLDN18 Missense_Mutation p.E250K 0.29 tolerated_low_confidence(0.23) benign(0.102) TCGA-FW-A3R5-06 3 137816641 137816641 G A DZIP1L Missense_Mutation p.H184Y 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 3 138191536 138191536 C T ESYT3 Missense_Mutation p.T691I 0.26 deleterious(0.02) possibly_damaging(0.628) TCGA-FW-A3R5-06 3 138219307 138219307 C T CEP70 Missense_Mutation p.E491K 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 138219681 138219681 G A CEP70 Missense_Mutation p.P422S 0.15 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 138724463 138724463 G A PRR23A Silent p.F216F 0.31 TCGA-FW-A3R5-06 3 138724491 138724491 G A PRR23A Missense_Mutation p.S207L 0.30 tolerated(0.21) benign(0.028) TCGA-FW-A3R5-06 3 138724783 138724783 C T PRR23A Missense_Mutation p.E110K 0.33 tolerated(0.06) possibly_damaging(0.904) TCGA-FW-A3R5-06 3 138738756 138738756 G A PRR23B Missense_Mutation p.L250F 0.26 tolerated(0.25) probably_damaging(0.912) TCGA-FW-A3R5-06 3 138738921 138738921 G A PRR23B Missense_Mutation p.P195S 0.25 tolerated(0.37) benign(0.34) TCGA-FW-A3R5-06 3 138763135 138763135 C T PRR23C Missense_Mutation p.E110K 0.33 tolerated(0.06) possibly_damaging(0.766) TCGA-FW-A3R5-06 3 13896295 13896295 G A WNT7A Missense_Mutation p.R102W 0.16 deleterious(0.02) benign(0.431) TCGA-FW-A3R5-06 3 139297788 139297788 C T NMNAT3 Silent p.Q36Q 0.27 TCGA-FW-A3R5-06 3 139346559 139346559 C T NMNAT3 5'UTR 0.15 TCGA-FW-A3R5-06 3 140123538 140123538 C T CLSTN2 Silent p.S189S 0.17 TCGA-FW-A3R5-06 3 140167471 140167471 G A CLSTN2 Missense_Mutation p.E300K 0.27 deleterious(0.04) benign(0.186) TCGA-FW-A3R5-06 3 140167494 140167494 G A CLSTN2 Silent p.G307G 0.17 TCGA-FW-A3R5-06 3 140167504 140167504 G A CLSTN2 Missense_Mutation p.D311N 0.28 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 3 140265500 140265500 G A CLSTN2 Missense_Mutation p.E551K 0.33 tolerated(0.05) benign(0.068) TCGA-FW-A3R5-06 3 140277573 140277573 G A CLSTN2 Missense_Mutation p.G639S 0.27 deleterious(0.04) possibly_damaging(0.882) TCGA-FW-A3R5-06 3 140277662 140277662 C T CLSTN2 Silent p.F668F 0.25 TCGA-FW-A3R5-06 3 140397412 140397412 C T TRIM42 Missense_Mutation p.S114F 0.30 tolerated(0.08) benign(0.01) TCGA-FW-A3R5-06 3 140407020 140407020 C T TRIM42 Missense_Mutation p.S499F 0.32 tolerated(0.34) benign(0.408) TCGA-FW-A3R5-06 3 140409953 140409953 C T TRIM42 Silent p.N668N 0.28 TCGA-FW-A3R5-06 3 140419821 140419821 C T TRIM42 3'UTR 0.23 TCGA-FW-A3R5-06 3 141163850 141163850 C T ZBTB38 Missense_Mutation p.P874S 0.28 tolerated(0.84) benign(0) TCGA-FW-A3R5-06 3 141163939 141163939 C T ZBTB38 Silent p.F903F 0.30 TCGA-FW-A3R5-06 3 141248564 141248564 A - RASA2 Frame_Shift_Del p.E126Kfs*32 0.28 TCGA-FW-A3R5-06 3 141292000 141292000 C T RASA2 Silent p.S432S 0.08 TCGA-FW-A3R5-06 3 141295889 141295889 C T RASA2 Missense_Mutation p.R511C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 141497184 141497184 C T GRK7 Missense_Mutation p.R20W 0.32 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 3 141497271 141497271 C T GRK7 Missense_Mutation p.R49C 0.13 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 3 141497337 141497337 C T GRK7 Missense_Mutation p.R71C 0.38 deleterious(0.01) probably_damaging(0.954) TCGA-FW-A3R5-06 3 141497486 141497486 G A GRK7 Silent p.G120G 0.21 TCGA-FW-A3R5-06 3 141499573 141499573 C T GRK7 Silent p.L324L 0.43 TCGA-FW-A3R5-06 3 141535653 141535653 C T GRK7 Missense_Mutation p.P475S 0.19 tolerated(0.14) possibly_damaging(0.839) TCGA-FW-A3R5-06 3 1415401 1415401 C T CNTN6 Nonsense_Mutation p.Q634* 0.32 TCGA-FW-A3R5-06 3 1418759 1418759 G A CNTN6 Silent p.E722E 0.28 TCGA-FW-A3R5-06 3 141904627 141904627 G A GK5 Intron 0.32 TCGA-FW-A3R5-06 3 141944198 141944198 G A GK5 Missense_Mutation p.H34Y 0.45 tolerated(0.07) probably_damaging(0.986) TCGA-FW-A3R5-06 3 141944199 141944199 G A GK5 Silent p.C33C 0.45 TCGA-FW-A3R5-06 3 142037485 142037485 G A XRN1 Missense_Mutation p.P1523S 0.26 tolerated_low_confidence(0.26) benign(0.024) TCGA-FW-A3R5-06 3 142176561 142176561 G A ATR Missense_Mutation p.R2514C 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 142180806 142180806 G A ATR Silent p.L2390L 0.24 TCGA-FW-A3R5-06 3 142188379 142188379 C T ATR Missense_Mutation p.D2118N 0.26 tolerated(0.16) possibly_damaging(0.529) TCGA-FW-A3R5-06 3 142405204 142405204 C T PLS1 Missense_Mutation p.L323F 0.19 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 3 142537228 142537228 G A PCOLCE2 Silent p.F399F 0.27 TCGA-FW-A3R5-06 3 142542441 142542441 C T PCOLCE2 Silent p.V294V 0.30 TCGA-FW-A3R5-06 3 142681066 142681066 G A PAQR9 Silent p.S371S 0.23 TCGA-FW-A3R5-06 3 142681068 142681068 A G PAQR9 Missense_Mutation p.S371P 0.23 deleterious(0.03) benign(0.04) TCGA-FW-A3R5-06 3 1427378 1427378 G A CNTN6 Silent p.T867T 0.28 TCGA-FW-A3R5-06 3 142741799 142741799 C T U2SURP Missense_Mutation p.P375S 0.14 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 3 142840893 142840893 C T CHST2 Missense_Mutation p.P412L 0.36 tolerated(0.35) probably_damaging(0.999) TCGA-FW-A3R5-06 3 142840921 142840921 G A CHST2 Silent p.L421L 0.10 TCGA-FW-A3R5-06 3 143100923 143100923 C T SLC9A9 Silent p.E501E 0.10 TCGA-FW-A3R5-06 3 143412128 143412128 C T SLC9A9 Silent p.V185V 0.25 TCGA-FW-A3R5-06 3 143513864 143513864 G A SLC9A9 Missense_Mutation p.A171V 0.30 tolerated(0.4) benign(0.058) TCGA-FW-A3R5-06 3 1443182 1443182 G A CNTN6 Missense_Mutation p.E924K 0.19 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 1444083 1444083 G A CNTN6 Missense_Mutation p.E967K 0.17 tolerated(0.63) possibly_damaging(0.601) TCGA-FW-A3R5-06 3 14489121 14489121 C T SLC6A6 Silent p.S132S 0.08 TCGA-FW-A3R5-06 3 14548453 14548453 C T GRIP2 RNA 0.21 TCGA-FW-A3R5-06 3 14561721 14561721 G A GRIP2 RNA 0.14 TCGA-FW-A3R5-06 3 14565186 14565186 C T GRIP2 RNA 0.27 TCGA-FW-A3R5-06 3 14567016 14567016 G A GRIP2 RNA 0.32 TCGA-FW-A3R5-06 3 145806495 145806495 G A PLOD2 Missense_Mutation p.H295Y 0.14 tolerated(1) benign(0) TCGA-FW-A3R5-06 3 147108974 147108974 C T ZIC4 Missense_Mutation p.D300N 0.21 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 3 147113688 147113688 C T ZIC4 Silent p.K263K 0.29 TCGA-FW-A3R5-06 3 147114176 147114176 G A ZIC4 Missense_Mutation p.P101S 0.35 tolerated(0.25) benign(0.002) TCGA-FW-A3R5-06 3 147120535 147120535 C T ZIC4 Missense_Mutation p.R67Q 0.21 tolerated_low_confidence(0.15) possibly_damaging(0.885) TCGA-FW-A3R5-06 3 147131157 147131157 C T ZIC1 Missense_Mutation p.S388L 0.24 tolerated(0.09) benign(0.012) TCGA-FW-A3R5-06 3 14724464 14724464 G A C3orf20 Missense_Mutation p.E82K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 3 14799050 14799050 C T C3orf20 Nonsense_Mutation p.R705* 0.29 TCGA-FW-A3R5-06 3 14814418 14814418 G A C3orf20 3'UTR 0.38 TCGA-FW-A3R5-06 3 148577674 148577674 G A CPB1 Missense_Mutation p.R380Q 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 148601507 148601507 G A CPA3 Missense_Mutation p.E296K 0.30 tolerated(0.21) benign(0.079) TCGA-FW-A3R5-06 3 148614388 148614388 G A CPA3 Missense_Mutation p.G383D 0.45 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 3 14862327 14862327 C T FGD5 Silent p.L583L 0.22 TCGA-FW-A3R5-06 3 14862573 14862573 G A FGD5 Silent p.T665T 0.14 TCGA-FW-A3R5-06 3 14862740 14862740 C T FGD5 Missense_Mutation p.S721F 0.28 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 3 148792128 148792128 G A HLTF Missense_Mutation p.P135S 0.26 deleterious(0.01) possibly_damaging(0.726) TCGA-FW-A3R5-06 3 148916196 148916196 C T CP Missense_Mutation p.M557I 0.27 deleterious(0.02) benign(0.038) TCGA-FW-A3R5-06 3 148927953 148927953 C T CP Splice_Site p.X203_splice 0.29 TCGA-FW-A3R5-06 3 148930248 148930248 C T CP Silent p.K128K 0.10 TCGA-FW-A3R5-06 3 149040164 149040164 C T TM4SF18 Nonsense_Mutation p.W157* 0.09 TCGA-FW-A3R5-06 3 14905687 14905687 G A FGD5 Missense_Mutation p.E860K 0.24 deleterious(0.02) benign(0.424) TCGA-FW-A3R5-06 3 149205458 149205458 C T TM4SF4 Missense_Mutation p.S106L 0.08 deleterious(0) possibly_damaging(0.592) TCGA-FW-A3R5-06 3 149290715 149290715 G A WWTR1 Silent p.L168L 0.30 TCGA-FW-A3R5-06 3 14939133 14939133 C T FGD5 Missense_Mutation p.H956Y 0.19 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 3 14960278 14960278 G A FGD5 Missense_Mutation p.M1169I 0.26 tolerated(0.46) benign(0.103) TCGA-FW-A3R5-06 3 150264576 150264576 C A EIF2A 5'UTR 0.28 TCGA-FW-A3R5-06 3 150659371 150659371 G A CLRN1 Missense_Mutation p.S144L 0.21 deleterious(0) possibly_damaging(0.557) TCGA-FW-A3R5-06 3 150661642 150661642 C T CLRN1 Intron 0.30 TCGA-FW-A3R5-06 3 150690521 150690521 G A CLRN1 5'Flank 0.28 TCGA-FW-A3R5-06 3 150877775 150877775 C T MED12L Missense_Mutation p.P332S 0.10 tolerated(0.21) benign(0.066) TCGA-FW-A3R5-06 3 150881794 150881794 C T MED12L Missense_Mutation p.P408S 0.22 deleterious(0) possibly_damaging(0.74) TCGA-FW-A3R5-06 3 150881820 150881820 C T MED12L Silent p.F416F 0.29 TCGA-FW-A3R5-06 3 150906174 150906174 G A MED12L Missense_Mutation p.E554K 0.30 tolerated(0.13) benign(0.304) TCGA-FW-A3R5-06 3 150916563 150916563 C T GPR171 Missense_Mutation p.R204Q 0.30 deleterious(0.04) probably_damaging(0.949) TCGA-FW-A3R5-06 3 150931954 150931954 G A P2RY14 Missense_Mutation p.P51S 0.23 tolerated(0.17) benign(0.15) TCGA-FW-A3R5-06 3 150932029 150932029 G A P2RY14 Missense_Mutation p.P26S 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 15093853 15093853 G A MRPS25 3'UTR 0.29 TCGA-FW-A3R5-06 3 151012587 151012587 G A GPR87 Silent p.D149D 0.15 TCGA-FW-A3R5-06 3 151056190 151056190 G A P2RY12 Silent p.I148I 0.25 TCGA-FW-A3R5-06 3 151056222 151056222 G A P2RY12 Missense_Mutation p.L138F 0.30 deleterious(0.04) probably_damaging(0.979) TCGA-FW-A3R5-06 3 151067847 151067847 G A MED12L Missense_Mutation p.D716N 0.25 deleterious(0) probably_damaging(0.97) TCGA-FW-A3R5-06 3 151085969 151085969 G A MED12L Silent p.A1125A 0.15 TCGA-FW-A3R5-06 3 151094619 151094619 G A MED12L Nonsense_Mutation p.W1327* 0.13 TCGA-FW-A3R5-06 3 151134155 151134155 C T MED12L Missense_Mutation p.S2083L 0.22 tolerated_low_confidence(0.18) benign(0.008) TCGA-FW-A3R5-06 3 151155646 151155646 G A IGSF10 Missense_Mutation p.P2235S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 151155953 151155953 G A IGSF10 Silent p.V2132V 0.12 TCGA-FW-A3R5-06 3 151155959 151155959 C T IGSF10 Missense_Mutation p.M2130I 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 151156198 151156198 G A IGSF10 Missense_Mutation p.L2051F 0.24 tolerated(0.19) benign(0.02) TCGA-FW-A3R5-06 3 151156369 151156369 G A IGSF10 Missense_Mutation p.H1994Y 0.26 deleterious(0.02) possibly_damaging(0.799) TCGA-FW-A3R5-06 3 151164261 151164261 C T IGSF10 Missense_Mutation p.E1170K 0.28 tolerated(0.12) benign(0.01) TCGA-FW-A3R5-06 3 151165602 151165602 C T IGSF10 Missense_Mutation p.E723K 0.36 tolerated(0.47) benign(0.086) TCGA-FW-A3R5-06 3 151165861 151165861 G A IGSF10 Silent p.T636T 0.23 TCGA-FW-A3R5-06 3 151166599 151166599 C T IGSF10 Silent p.R390R 0.45 TCGA-FW-A3R5-06 3 151167023 151167023 G A IGSF10 Missense_Mutation p.P249L 0.30 tolerated(0.12) benign(0.007) TCGA-FW-A3R5-06 3 151171418 151171418 G A IGSF10 Silent p.L157L 0.29 TCGA-FW-A3R5-06 3 151451837 151451837 C T AADACL2 Missense_Mutation p.A5V 0.38 tolerated(0.25) unknown(0) TCGA-FW-A3R5-06 3 151474779 151474779 G A AADACL2 Splice_Site p.X202_splice 0.32 TCGA-FW-A3R5-06 3 151542595 151542595 G A AADAC Silent p.G192G 0.19 TCGA-FW-A3R5-06 3 151545475 151545475 C T AADAC Silent p.L239L 0.30 TCGA-FW-A3R5-06 3 151545614 151545614 C T AADAC Missense_Mutation p.S285F 0.28 deleterious(0.01) possibly_damaging(0.726) TCGA-FW-A3R5-06 3 151597688 151597688 G A SUCNR1 Missense_Mutation p.G3E 0.17 tolerated_low_confidence(0.8) benign(0.006) TCGA-FW-A3R5-06 3 151599232 151599232 C T SUCNR1 Missense_Mutation p.H301Y 0.29 deleterious(0.02) possibly_damaging(0.783) TCGA-FW-A3R5-06 3 15265021 15265021 C T CAPN7 Silent p.F226F 0.21 TCGA-FW-A3R5-06 3 15303785 15303785 C T SH3BP5 Silent p.A169A 0.23 TCGA-FW-A3R5-06 3 154139092 154139092 T A GPR149 Missense_Mutation p.K453N 0.20 tolerated(0.13) possibly_damaging(0.478) TCGA-FW-A3R5-06 3 154146656 154146656 G A GPR149 Missense_Mutation p.S250F 0.14 deleterious(0.01) benign(0.049) TCGA-FW-A3R5-06 3 154147141 154147141 G A GPR149 Silent p.F88F 0.13 TCGA-FW-A3R5-06 3 154860056 154860056 C T MME Silent p.F375F 0.28 TCGA-FW-A3R5-06 3 154860085 154860085 G A MME Missense_Mutation p.R385Q 0.09 tolerated(0.8) benign(0.052) TCGA-FW-A3R5-06 3 154861319 154861319 C T MME Missense_Mutation p.L426F 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 3 154886389 154886389 C T MME Missense_Mutation p.S630F 0.27 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 3 155198856 155198856 G A PLCH1 Silent p.H1661H 0.46 TCGA-FW-A3R5-06 3 155200508 155200508 C T PLCH1 Missense_Mutation p.G1111S 0.33 tolerated_low_confidence(0.24) benign(0.044) TCGA-FW-A3R5-06 3 155200514 155200514 C T PLCH1 Missense_Mutation p.E1109K 0.34 tolerated_low_confidence(0.56) benign(0.005) TCGA-FW-A3R5-06 3 155203214 155203214 G A PLCH1 Missense_Mutation p.L977F 0.24 deleterious_low_confidence(0.04) benign(0.102) TCGA-FW-A3R5-06 3 155203216 155203216 T C PLCH1 Missense_Mutation p.N976S 0.25 tolerated_low_confidence(0.44) benign(0) TCGA-FW-A3R5-06 3 155203411 155203411 C T PLCH1 Missense_Mutation p.R911Q 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-FW-A3R5-06 3 155212010 155212010 C T PLCH1 Missense_Mutation p.R689Q 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 155222375 155222375 C T PLCH1 Missense_Mutation p.R546Q 0.24 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 3 155232579 155232579 G A PLCH1 Missense_Mutation p.P510L 0.23 deleterious(0.01) possibly_damaging(0.721) TCGA-FW-A3R5-06 3 15563152 15563152 G A COLQ 5'UTR 0.40 TCGA-FW-A3R5-06 3 155643132 155643132 C T GMPS Missense_Mutation p.P513S 0.47 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 155649647 155649647 C T GMPS Missense_Mutation p.R552C 0.25 deleterious(0.04) probably_damaging(0.927) TCGA-FW-A3R5-06 3 155860855 155860855 A G KCNAB1 Intron 0.31 TCGA-FW-A3R5-06 3 155861118 155861118 G A KCNAB1 Intron 0.29 TCGA-FW-A3R5-06 3 156395585 156395585 C T TIPARP Silent p.I33I 0.12 TCGA-FW-A3R5-06 3 156395948 156395948 C T TIPARP Silent p.S154S 0.29 TCGA-FW-A3R5-06 3 156711020 156711020 C T RP11-6F2.3 5'Flank 0.08 TCGA-FW-A3R5-06 3 156711062 156711062 G A RP11-6F2.3 5'Flank 0.21 TCGA-FW-A3R5-06 3 157817725 157817725 C T SHOX2 Missense_Mutation p.G233E 0.17 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 3 15915346 15915346 C T MIR563 RNA 0.31 TCGA-FW-A3R5-06 3 159584018 159584018 C T IQCJ-SCHIP1 Missense_Mutation p.P352S 0.26 deleterious(0.03) probably_damaging(0.939) TCGA-FW-A3R5-06 3 159605610 159605610 G A IQCJ-SCHIP1 Missense_Mutation p.M446I 0.25 tolerated(0.29) benign(0.188) TCGA-FW-A3R5-06 3 159708044 159708044 C T IL12A Missense_Mutation p.P70L 0.21 tolerated(0.08) benign(0.006) TCGA-FW-A3R5-06 3 159713395 159713395 G A IL12A 3'UTR 0.17 TCGA-FW-A3R5-06 3 159997081 159997081 G A IFT80 Missense_Mutation p.S579F 0.33 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 3 160025566 160025566 G A IFT80 Missense_Mutation p.R321C 0.20 deleterious(0) possibly_damaging(0.847) TCGA-FW-A3R5-06 3 160803840 160803840 G A B3GALNT1 Missense_Mutation p.P235S 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 161214670 161214670 C T OTOL1 Silent p.T25T 0.32 TCGA-FW-A3R5-06 3 161214772 161214772 C T OTOL1 Silent p.F59F 0.29 TCGA-FW-A3R5-06 3 161214805 161214805 C T OTOL1 Silent p.T70T 0.10 TCGA-FW-A3R5-06 3 161214865 161214865 C T OTOL1 Silent p.F90F 0.17 TCGA-FW-A3R5-06 3 161221131 161221131 C T OTOL1 Missense_Mutation p.R279C 0.38 deleterious(0.05) possibly_damaging(0.748) TCGA-FW-A3R5-06 3 161221230 161221230 G A OTOL1 Missense_Mutation p.D312N 0.24 tolerated(0.39) benign(0.289) TCGA-FW-A3R5-06 3 161221279 161221279 G A OTOL1 Missense_Mutation p.R328Q 0.30 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 161221357 161221357 C T OTOL1 Missense_Mutation p.P354L 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 161221429 161221429 G A OTOL1 Missense_Mutation p.G378E 0.25 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 16216596 16216596 G A GALNT15 5'UTR 0.39 TCGA-FW-A3R5-06 3 16217068 16217068 C T GALNT15 Missense_Mutation p.A137V 0.40 deleterious(0.03) benign(0.083) TCGA-FW-A3R5-06 3 16242248 16242248 G A GALNT15 Missense_Mutation p.D277N 0.35 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 3 16358167 16358167 G A RFTN1 3'UTR 0.32 TCGA-FW-A3R5-06 3 16411595 16411595 C T RFTN1 Missense_Mutation p.G340R 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-FW-A3R5-06 3 16411782 16411782 C T RFTN1 Missense_Mutation p.M277I 0.29 tolerated(0.17) benign(0.033) TCGA-FW-A3R5-06 3 164732947 164732947 G A SI Silent p.V1321V 0.24 TCGA-FW-A3R5-06 3 164733803 164733803 G A SI Silent p.F1275F 0.30 TCGA-FW-A3R5-06 3 164741402 164741402 G A SI Missense_Mutation p.R1019C 0.24 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 3 16475435 16475435 G A RFTN1 Silent p.F85F 0.18 TCGA-FW-A3R5-06 3 164776773 164776773 C T SI Missense_Mutation p.G459E 0.16 deleterious(0.01) benign(0.044) TCGA-FW-A3R5-06 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.35 deleterious(0) probably_damaging(0.929) TCGA-FW-A3R5-06 3 164905885 164905885 C T SLITRK3 Missense_Mutation p.E912K 0.26 tolerated(0.18) benign(0.078) TCGA-FW-A3R5-06 3 164906248 164906248 G A SLITRK3 Missense_Mutation p.L791F 0.33 tolerated(0.14) benign(0.02) TCGA-FW-A3R5-06 3 164906683 164906683 G A SLITRK3 Missense_Mutation p.P646S 0.26 tolerated(0.22) benign(0.005) TCGA-FW-A3R5-06 3 164907225 164907225 C T SLITRK3 Missense_Mutation p.G465D 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-FW-A3R5-06 3 164908361 164908361 C A SLITRK3 Missense_Mutation p.R86S 0.32 tolerated(0.14) possibly_damaging(0.787) TCGA-FW-A3R5-06 3 164908493 164908493 C T SLITRK3 Silent p.E42E 0.12 TCGA-FW-A3R5-06 3 16535241 16535241 G A RFTN1 Silent p.L46L 0.25 TCGA-FW-A3R5-06 3 165503967 165503967 C T BCHE Nonsense_Mutation p.W550* 0.12 TCGA-FW-A3R5-06 3 165503968 165503968 C T BCHE Nonsense_Mutation p.W550* 0.13 TCGA-FW-A3R5-06 3 16636058 16636058 C T DAZL Silent p.R221R 0.36 TCGA-FW-A3R5-06 3 16646879 16646879 G A DAZL 5'Flank 0.21 TCGA-FW-A3R5-06 3 166958581 166958581 T A ZBBX Nonstop_Mutation p.*840Yext*36 0.28 TCGA-FW-A3R5-06 3 166958637 166958637 C T ZBBX Missense_Mutation p.E822K 0.31 tolerated(0.05) possibly_damaging(0.465) TCGA-FW-A3R5-06 3 167023529 167023529 C T ZBBX Missense_Mutation p.E543K 0.34 tolerated(0.91) benign(0.006) TCGA-FW-A3R5-06 3 167039933 167039933 C T ZBBX Missense_Mutation p.E319K 0.27 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 3 167045758 167045758 C T ZBBX Silent p.K278K 0.34 TCGA-FW-A3R5-06 3 167051693 167051693 C T ZBBX Silent p.E203E 0.25 TCGA-FW-A3R5-06 3 167077760 167077760 C T ZBBX Silent p.V110V 0.29 TCGA-FW-A3R5-06 3 167159920 167159920 C T SERPINI2 Missense_Mutation p.G399R 0.36 tolerated(0.15) benign(0.039) TCGA-FW-A3R5-06 3 167164253 167164253 C T SERPINI2 Silent p.V356V 0.18 TCGA-FW-A3R5-06 3 167184964 167184964 C T SERPINI2 Silent p.V119V 0.31 TCGA-FW-A3R5-06 3 167240194 167240194 C T WDR49 Missense_Mutation p.E543K 0.63 tolerated(0.12) benign(0.014) TCGA-FW-A3R5-06 3 167240254 167240254 C T WDR49 Missense_Mutation p.E523K 0.20 tolerated(0.13) benign(0.008) TCGA-FW-A3R5-06 3 167247009 167247009 G A WDR49 Missense_Mutation p.S394L 0.34 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 3 167272581 167272581 C T WDR49 Nonsense_Mutation p.W219* 0.30 TCGA-FW-A3R5-06 3 167293777 167293777 C T WDR49 Missense_Mutation p.E139K 0.31 tolerated(0.11) benign(0.168) TCGA-FW-A3R5-06 3 167437899 167437899 G A PDCD10 Missense_Mutation p.S16F 0.28 deleterious(0.01) possibly_damaging(0.889) TCGA-FW-A3R5-06 3 167512518 167512518 C T SERPINI1 Missense_Mutation p.P263S 0.36 tolerated(0.45) benign(0.198) TCGA-FW-A3R5-06 3 167525098 167525098 C T SERPINI1 Silent p.F316F 0.12 TCGA-FW-A3R5-06 3 167747817 167747817 G A GOLIM4 Missense_Mutation p.P395L 0.31 tolerated(0.12) benign(0.024) TCGA-FW-A3R5-06 3 168269701 168269701 G A MIR551B RNA 0.22 TCGA-FW-A3R5-06 3 168802637 168802637 C T MECOM 3'UTR 0.10 TCGA-FW-A3R5-06 3 168807887 168807887 C T MECOM Missense_Mutation p.G978E 0.29 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 3 168812899 168812899 C T MECOM Missense_Mutation p.R872K 0.25 deleterious(0.04) benign(0.253) TCGA-FW-A3R5-06 3 168819864 168819864 C T MECOM Missense_Mutation p.E796K 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 3 168833244 168833244 C T MECOM Missense_Mutation p.E683K 0.09 tolerated(0.19) benign(0.207) TCGA-FW-A3R5-06 3 168833388 168833388 G A MECOM Missense_Mutation p.P635S 0.20 tolerated(0.25) benign(0.019) TCGA-FW-A3R5-06 3 168833569 168833569 G A MECOM Silent p.L574L 0.30 TCGA-FW-A3R5-06 3 168833573 168833573 G A MECOM Missense_Mutation p.P573L 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 168833838 168833838 C T MECOM Missense_Mutation p.D485N 0.17 deleterious(0.01) possibly_damaging(0.657) TCGA-FW-A3R5-06 3 168838897 168838897 G A MECOM Missense_Mutation p.S237L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 168845770 168845770 G A MECOM Missense_Mutation p.P107L 0.28 deleterious(0.04) possibly_damaging(0.713) TCGA-FW-A3R5-06 3 168861618 168861618 G A MECOM Silent p.I2I 0.16 TCGA-FW-A3R5-06 3 169539831 169539831 C T LRRIQ4 Missense_Mutation p.P41L 0.29 tolerated(0.07) possibly_damaging(0.831) TCGA-FW-A3R5-06 3 169539934 169539934 C T LRRIQ4 Silent p.V75V 0.31 TCGA-FW-A3R5-06 3 169539941 169539941 C T LRRIQ4 Silent p.L78L 0.30 TCGA-FW-A3R5-06 3 169540207 169540207 G A LRRIQ4 Silent p.K166K 0.11 TCGA-FW-A3R5-06 3 169540249 169540249 C T LRRIQ4 Silent p.F180F 0.29 TCGA-FW-A3R5-06 3 169540351 169540351 G A LRRIQ4 Silent p.Q214Q 0.32 TCGA-FW-A3R5-06 3 169548310 169548310 C T LRRIQ4 Missense_Mutation p.H409Y 0.21 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 3 169550939 169550939 G A LRRIQ4 Missense_Mutation p.E500K 0.27 tolerated(0.22) benign(0.006) TCGA-FW-A3R5-06 3 169557722 169557722 T A LRRC31 3'UTR 0.24 TCGA-FW-A3R5-06 3 169644414 169644414 C T SAMD7 Silent p.L122L 0.35 TCGA-FW-A3R5-06 3 169644428 169644428 C T SAMD7 Silent p.F126F 0.28 TCGA-FW-A3R5-06 3 169644533 169644533 G A SAMD7 Silent p.Q161Q 0.36 TCGA-FW-A3R5-06 3 169644608 169644608 A T SAMD7 Missense_Mutation p.K186N 0.30 deleterious(0.01) benign(0.143) TCGA-FW-A3R5-06 3 169656228 169656228 G A SAMD7 Missense_Mutation p.M425I 0.33 tolerated(0.06) benign(0.001) TCGA-FW-A3R5-06 3 169656259 169656259 C T SAMD7 Missense_Mutation p.P436S 0.21 tolerated(0.51) benign(0.352) TCGA-FW-A3R5-06 3 169663602 169663602 G A RP11-379K17.4 RNA 0.24 TCGA-FW-A3R5-06 3 169663684 169663684 G A RP11-379K17.4 RNA 0.12 TCGA-FW-A3R5-06 3 169663768 169663768 C T RP11-379K17.4 RNA 0.07 TCGA-FW-A3R5-06 3 169663986 169663986 C T RP11-379K17.4 RNA 0.07 TCGA-FW-A3R5-06 3 169863233 169863233 G A PHC3 Missense_Mutation p.S217F 0.19 deleterious(0.03) probably_damaging(0.914) TCGA-FW-A3R5-06 3 170020883 170020883 C T PRKCI Missense_Mutation p.P587S 0.27 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 3 170078041 170078041 C T SKIL 5'UTR 0.27 TCGA-FW-A3R5-06 3 170198469 170198469 C T SLC7A14 Silent p.K534K 0.28 TCGA-FW-A3R5-06 3 17051295 17051295 C T PLCL2 Missense_Mutation p.R27C 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 17051521 17051521 C T PLCL2 Missense_Mutation p.S102L 0.28 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3R5-06 3 17052326 17052326 C T PLCL2 Silent p.F370F 0.30 TCGA-FW-A3R5-06 3 17053020 17053020 C T PLCL2 Missense_Mutation p.L602F 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 17053361 17053361 C T PLCL2 Silent p.F715F 0.28 TCGA-FW-A3R5-06 3 170716065 170716065 G A SLC2A2 Missense_Mutation p.P431S 0.23 deleterious(0.03) possibly_damaging(0.58) TCGA-FW-A3R5-06 3 170720368 170720368 G A SLC2A2 Silent p.V355V 0.26 TCGA-FW-A3R5-06 3 170805228 170805228 G A TNIK Missense_Mutation p.P930L 0.24 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 170805230 170805230 G A TNIK Silent p.L929L 0.24 TCGA-FW-A3R5-06 3 170819401 170819401 C T TNIK Missense_Mutation p.E810K 0.27 tolerated(0.14) possibly_damaging(0.759) TCGA-FW-A3R5-06 3 171406482 171406482 G A PLD1 Missense_Mutation p.S508F 0.10 deleterious(0.01) benign(0.252) TCGA-FW-A3R5-06 3 172025193 172025193 G A FNDC3B Missense_Mutation p.E368K 0.25 deleterious(0) possibly_damaging(0.655) TCGA-FW-A3R5-06 3 17208398 17208398 G A TBC1D5 Missense_Mutation p.S674F 0.33 deleterious(0) possibly_damaging(0.883) TCGA-FW-A3R5-06 3 172163094 172163094 G A GHSR Missense_Mutation p.P320S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 3 172165491 172165491 T C GHSR Missense_Mutation p.K238R 0.26 tolerated(0.39) benign(0.012) TCGA-FW-A3R5-06 3 172165667 172165667 G A GHSR Silent p.F179F 0.30 TCGA-FW-A3R5-06 3 172165791 172165791 C T GHSR Missense_Mutation p.S138N 0.21 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 3 172165867 172165867 C T GHSR Missense_Mutation p.D113N 0.27 tolerated(0.24) benign(0.034) TCGA-FW-A3R5-06 3 172241118 172241118 G A TNFSF10 Silent p.I19I 0.26 TCGA-FW-A3R5-06 3 172428810 172428810 G A NCEH1 Missense_Mutation p.L21F 0.25 tolerated_low_confidence(0.18) benign(0) TCGA-FW-A3R5-06 3 172479429 172479429 G A ECT2 Missense_Mutation p.M238I 0.30 deleterious(0.01) benign(0.043) TCGA-FW-A3R5-06 3 172504301 172504301 C T ECT2 Missense_Mutation p.A615V 0.20 tolerated(0.3) benign(0.003) TCGA-FW-A3R5-06 3 172674507 172674507 G A SPATA16 Silent p.F347F 0.29 TCGA-FW-A3R5-06 3 172737294 172737294 C T SPATA16 Missense_Mutation p.R277K 0.19 deleterious(0) benign(0.14) TCGA-FW-A3R5-06 3 172766859 172766859 C T SPATA16 Missense_Mutation p.G213E 0.24 tolerated(0.54) benign(0) TCGA-FW-A3R5-06 3 17279774 17279774 G A TBC1D5 Missense_Mutation p.S490F 0.20 tolerated(0.15) benign(0.046) TCGA-FW-A3R5-06 3 172834990 172834990 C T SPATA16 Missense_Mutation p.V178I 0.10 deleterious(0.01) benign(0.198) TCGA-FW-A3R5-06 3 17418070 17418070 G A TBC1D5 Silent p.V216V 0.21 TCGA-FW-A3R5-06 3 174951855 174951855 C T NAALADL2 Missense_Mutation p.S227F 0.36 deleterious(0) benign(0.413) TCGA-FW-A3R5-06 3 175041968 175041968 C T NAALADL2 Missense_Mutation p.S315F 0.13 deleterious(0.01) possibly_damaging(0.907) TCGA-FW-A3R5-06 3 175184890 175184890 G A NAALADL2 Missense_Mutation p.G484E 0.27 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 3 176768298 176768298 G A TBL1XR1 Silent p.A176A 0.20 TCGA-FW-A3R5-06 3 178942511 178942511 C T PIK3CA Missense_Mutation p.S773F 0.24 deleterious(0.02) possibly_damaging(0.679) TCGA-FW-A3R5-06 3 178968736 178968736 G A KCNMB3 Intron 0.12 TCGA-FW-A3R5-06 3 179525581 179525581 C T PEX5L Silent p.A519A 0.06 TCGA-FW-A3R5-06 3 179526210 179526210 C T PEX5L Silent p.G456G 0.26 TCGA-FW-A3R5-06 3 179597799 179597799 G A PEX5L Silent p.A141A 0.19 TCGA-FW-A3R5-06 3 179597800 179597800 G A PEX5L Missense_Mutation p.A141V 0.19 tolerated_low_confidence(0.24) benign(0.001) TCGA-FW-A3R5-06 3 180359940 180359940 C T CCDC39 Missense_Mutation p.R572Q 0.29 tolerated(0.16) possibly_damaging(0.629) TCGA-FW-A3R5-06 3 180365995 180365995 C T CCDC39 Silent p.L440L 0.21 TCGA-FW-A3R5-06 3 180372697 180372697 C T CCDC39 Silent p.L261L 0.20 TCGA-FW-A3R5-06 3 180381713 180381713 C T CCDC39 Missense_Mutation p.R51Q 0.26 tolerated(0.12) possibly_damaging(0.742) TCGA-FW-A3R5-06 3 182563248 182563248 C T ATP11B Missense_Mutation p.P236L 0.16 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 3 182597411 182597411 C T ATP11B Missense_Mutation p.R794C 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 182763211 182763211 C T MCCC1 Nonsense_Mutation p.W358* 0.24 TCGA-FW-A3R5-06 3 182841908 182841908 G A LAMP3 Silent p.I404I 0.26 TCGA-FW-A3R5-06 3 182988250 182988250 C T B3GNT5 Missense_Mutation p.R222C 0.28 deleterious(0.03) benign(0.305) TCGA-FW-A3R5-06 3 182994669 182994669 G A MCF2L2 Missense_Mutation p.S618F 0.36 tolerated(0.08) benign(0.013) TCGA-FW-A3R5-06 3 183014925 183014925 G A MCF2L2 Missense_Mutation p.L446F 0.15 deleterious(0.01) probably_damaging(0.927) TCGA-FW-A3R5-06 3 183097158 183097158 C T MCF2L2 Missense_Mutation p.E68K 0.35 deleterious(0) possibly_damaging(0.457) TCGA-FW-A3R5-06 3 183107490 183107490 G A MCF2L2 Missense_Mutation p.L52F 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 3 183209732 183209732 C T KLHL6 Missense_Mutation p.G617R 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-FW-A3R5-06 3 183211937 183211937 C T KLHL6 Missense_Mutation p.G427E 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 183211938 183211938 C T KLHL6 Missense_Mutation p.G427R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 183226214 183226214 G A KLHL6 Missense_Mutation p.A181V 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 183381334 183381334 C T KLHL24 Missense_Mutation p.P337S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 3 183446550 183446550 C G YEATS2 Silent p.S241S 0.10 TCGA-FW-A3R5-06 3 183521816 183521816 C T YEATS2 Silent p.I1208I 0.37 TCGA-FW-A3R5-06 3 183655757 183655757 G A ABCC5 Silent p.G1262G 0.31 TCGA-FW-A3R5-06 3 183756736 183756736 C T HTR3D Silent p.I446I 0.20 TCGA-FW-A3R5-06 3 183770845 183770845 C T HTR3C 5'UTR 0.28 TCGA-FW-A3R5-06 3 183774774 183774774 C T HTR3C Silent p.F167F 0.07 TCGA-FW-A3R5-06 3 183777626 183777626 C T HTR3C Silent p.F312F 0.07 TCGA-FW-A3R5-06 3 183777966 183777966 G A HTR3C Silent p.G390G 0.27 TCGA-FW-A3R5-06 3 183778095 183778095 C T HTR3C Silent p.F433F 0.28 TCGA-FW-A3R5-06 3 183778149 183778149 C T HTR3C 3'UTR 0.30 TCGA-FW-A3R5-06 3 183778150 183778150 C T HTR3C 3'UTR 0.29 TCGA-FW-A3R5-06 3 183818155 183818155 C T HTR3E 5'Flank 0.08 TCGA-FW-A3R5-06 3 183822058 183822058 C T HTR3E Missense_Mutation p.P123L 0.29 tolerated(0.07) benign(0.424) TCGA-FW-A3R5-06 3 183823084 183823084 G A HTR3E Missense_Mutation p.E223K 0.26 tolerated(0.16) benign(0.135) TCGA-FW-A3R5-06 3 183888410 183888410 C T DVL3 Missense_Mutation p.P673L 0.42 tolerated(0.08) possibly_damaging(0.908) TCGA-FW-A3R5-06 3 183888435 183888435 C T DVL3 Silent p.A681A 0.42 TCGA-FW-A3R5-06 3 183898343 183898343 C T AP2M1 Intron 0.25 TCGA-FW-A3R5-06 3 183907661 183907661 C T ABCF3 Missense_Mutation p.R445C 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 18391011 18391011 C T SATB1 Missense_Mutation p.R680Q 0.28 deleterious(0.02) benign(0.051) TCGA-FW-A3R5-06 3 18391067 18391067 G A SATB1 Silent p.P661P 0.29 TCGA-FW-A3R5-06 3 183976274 183976274 C T ECE2 Intron 0.23 TCGA-FW-A3R5-06 3 183995769 183995769 C T ECE2 Silent p.L297L 0.30 TCGA-FW-A3R5-06 3 184002751 184002751 G A ECE2 Missense_Mutation p.A454T 0.26 tolerated(0.71) benign(0.005) TCGA-FW-A3R5-06 3 184003362 184003362 C T ECE2 Silent p.T533T 0.11 TCGA-FW-A3R5-06 3 184009978 184009978 C T ECE2 Silent p.C868C 0.11 TCGA-FW-A3R5-06 3 184039162 184039162 C T EIF4G1 Missense_Mutation p.P271S 0.26 tolerated(0.06) probably_damaging(0.99) TCGA-FW-A3R5-06 3 184059620 184059620 C T FAM131A Intron 0.28 TCGA-FW-A3R5-06 3 184062315 184062315 C T FAM131A Missense_Mutation p.L220F 0.06 tolerated(0.08) probably_damaging(0.986) TCGA-FW-A3R5-06 3 184075040 184075040 G A CLCN2 Missense_Mutation p.L305F 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 3 184090609 184090609 C T THPO Missense_Mutation p.E252K 0.20 tolerated_low_confidence(0.21) benign(0.002) TCGA-FW-A3R5-06 3 184099561 184099561 C T CHRD Missense_Mutation p.S190L 0.44 tolerated(0.31) benign(0.049) TCGA-FW-A3R5-06 3 184099748 184099748 C T CHRD Silent p.F213F 0.31 TCGA-FW-A3R5-06 3 184100609 184100609 C T CHRD Intron 0.35 TCGA-FW-A3R5-06 3 184101325 184101325 G A CHRD Silent p.G445G 0.17 TCGA-FW-A3R5-06 3 184103895 184103895 C T CHRD Missense_Mutation p.A627V 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 3 184103898 184103898 C T CHRD Missense_Mutation p.S628F 0.28 tolerated(1) benign(0.109) TCGA-FW-A3R5-06 3 184104544 184104544 G A CHRD Splice_Site p.X732_splice 0.29 TCGA-FW-A3R5-06 3 184107212 184107212 G A CHRD 3'UTR 0.21 TCGA-FW-A3R5-06 3 184293694 184293694 C T EPHB3 Silent p.T311T 0.24 TCGA-FW-A3R5-06 3 184295503 184295503 C T EPHB3 Missense_Mutation p.L513F 0.26 deleterious(0) probably_damaging(0.934) TCGA-FW-A3R5-06 3 184298401 184298401 C T EPHB3 Missense_Mutation p.S795F 0.31 deleterious(0.02) benign(0.428) TCGA-FW-A3R5-06 3 184298852 184298852 G A EPHB3 Silent p.R877R 0.24 TCGA-FW-A3R5-06 3 184299059 184299059 G A EPHB3 Silent p.L917L 0.28 TCGA-FW-A3R5-06 3 18436239 18436239 G A SATB1 Silent p.L307L 0.17 TCGA-FW-A3R5-06 3 184542340 184542340 C T VPS8 5'UTR 0.19 TCGA-FW-A3R5-06 3 18456703 18456703 G A SATB1 Missense_Mutation p.P180L 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 3 184580816 184580816 C T VPS8 Silent p.F452F 0.34 TCGA-FW-A3R5-06 3 18458484 18458484 G A SATB1 Silent p.L100L 0.27 TCGA-FW-A3R5-06 3 18462396 18462396 C T SATB1 Missense_Mutation p.D22N 0.34 deleterious(0.01) benign(0.048) TCGA-FW-A3R5-06 3 184632794 184632794 C T VPS8 Missense_Mutation p.P739S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 3 185146729 185146729 C T MAP3K13 Silent p.F120F 0.23 TCGA-FW-A3R5-06 3 185165676 185165676 C T MAP3K13 Silent p.V317V 0.12 TCGA-FW-A3R5-06 3 185229332 185229332 C T LIPH Silent p.R416R 0.31 TCGA-FW-A3R5-06 3 185229469 185229469 G A LIPH Nonsense_Mutation p.Q371* 0.26 TCGA-FW-A3R5-06 3 185232257 185232257 C T LIPH Silent p.G345G 0.23 TCGA-FW-A3R5-06 3 185318607 185318607 C T SENP2 Missense_Mutation p.T138I 0.17 tolerated(0.11) benign(0.068) TCGA-FW-A3R5-06 3 185434602 185434602 G A C3orf65 3'UTR 0.24 TCGA-FW-A3R5-06 3 185638963 185638963 G A TRA2B Silent p.R217R 0.26 TCGA-FW-A3R5-06 3 185766484 185766484 G A ETV5 Missense_Mutation p.L493F 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 3 185969700 185969700 C T DGKG Missense_Mutation p.G537R 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 186006591 186006591 G A DGKG Missense_Mutation p.S151F 0.29 deleterious(0.01) benign(0.14) TCGA-FW-A3R5-06 3 186015231 186015231 C T DGKG Missense_Mutation p.E118K 0.16 tolerated(0.87) benign(0.047) TCGA-FW-A3R5-06 3 186015882 186015882 C T DGKG Missense_Mutation p.G94E 0.18 tolerated(0.19) benign(0.012) TCGA-FW-A3R5-06 3 186272334 186272334 G A TBCCD1 Missense_Mutation p.P418L 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 186274254 186274254 G A TBCCD1 Missense_Mutation p.P268L 0.34 deleterious(0.03) possibly_damaging(0.458) TCGA-FW-A3R5-06 3 186338496 186338496 C T AHSG Missense_Mutation p.P294L 0.17 tolerated(0.87) possibly_damaging(0.525) TCGA-FW-A3R5-06 3 186338623 186338623 C T AHSG Silent p.P336P 0.23 TCGA-FW-A3R5-06 3 186338624 186338624 C T AHSG Missense_Mutation p.R337W 0.23 deleterious(0.02) possibly_damaging(0.599) TCGA-FW-A3R5-06 3 186362702 186362702 C T FETUB Missense_Mutation p.S196F 0.18 deleterious(0.05) benign(0.316) TCGA-FW-A3R5-06 3 186364116 186364116 C T FETUB Missense_Mutation p.S225L 0.27 tolerated(0.28) benign(0.02) TCGA-FW-A3R5-06 3 186389428 186389428 C T HRG Silent p.A136A 0.35 TCGA-FW-A3R5-06 3 186435269 186435269 C G KNG1 5'UTR 0.23 TCGA-FW-A3R5-06 3 186437989 186437989 G A KNG1 Silent p.K97K 0.38 TCGA-FW-A3R5-06 3 186445073 186445073 G A KNG1 Silent p.T204T 0.14 TCGA-FW-A3R5-06 3 186445088 186445088 G A KNG1 Silent p.E209E 0.08 TCGA-FW-A3R5-06 3 186459360 186459360 G A KNG1 Missense_Mutation p.R392Q 0.13 tolerated(0.53) benign(0.001) TCGA-FW-A3R5-06 3 186459485 186459485 G A KNG1 Missense_Mutation p.E434K 0.25 tolerated(0.48) benign(0.007) TCGA-FW-A3R5-06 3 186572529 186572529 G A ADIPOQ 3'UTR 0.30 TCGA-FW-A3R5-06 3 186572610 186572610 C T ADIPOQ 3'UTR 0.17 TCGA-FW-A3R5-06 3 186761062 186761062 G A ST6GAL1 Missense_Mutation p.G191R 0.15 probably_damaging(0.999) TCGA-FW-A3R5-06 3 186917640 186917640 G A RTP1 Missense_Mutation p.E192K 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 3 186944231 186944231 C T MASP1 Missense_Mutation p.D507N 0.21 tolerated(0.32) benign(0.44) TCGA-FW-A3R5-06 3 186944252 186944252 C T MASP1 Missense_Mutation p.D500N 0.17 tolerated(0.38) benign(0.004) TCGA-FW-A3R5-06 3 186953454 186953454 C T MASP1 3'UTR 0.11 TCGA-FW-A3R5-06 3 186954048 186954048 G A MASP1 Silent p.A537A 0.11 TCGA-FW-A3R5-06 3 186954305 186954305 C T MASP1 Missense_Mutation p.G452R 0.10 deleterious(0.02) possibly_damaging(0.655) TCGA-FW-A3R5-06 3 186965080 186965080 G A MASP1 Intron 0.16 TCGA-FW-A3R5-06 3 187416226 187416226 C T RTP2 3'UTR 0.53 TCGA-FW-A3R5-06 3 187416366 187416366 G A RTP2 Missense_Mutation p.R200C 0.19 deleterious(0.01) possibly_damaging(0.776) TCGA-FW-A3R5-06 3 187419802 187419802 C T RTP2 Missense_Mutation p.E39K 0.20 tolerated(0.82) benign(0.053) TCGA-FW-A3R5-06 3 187420050 187420050 C T RTP2 5'UTR 0.54 TCGA-FW-A3R5-06 3 187447255 187447255 G A BCL6 Missense_Mutation p.A313V 0.31 tolerated(0.26) benign(0.05) TCGA-FW-A3R5-06 3 188202397 188202397 C T LPP Missense_Mutation p.P71S 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 3 188592225 188592225 C T LPP Silent p.A599A 0.29 TCGA-FW-A3R5-06 3 188956533 188956533 G A TPRG1 Nonsense_Mutation p.W105* 0.32 TCGA-FW-A3R5-06 3 188956634 188956634 C T TPRG1 Missense_Mutation p.P139S 0.27 tolerated(0.2) benign(0.444) TCGA-FW-A3R5-06 3 189455532 189455532 C T TP63 Silent p.F22F 0.22 TCGA-FW-A3R5-06 3 189526084 189526084 C T TP63 Silent p.L116L 0.31 TCGA-FW-A3R5-06 3 189586379 189586379 C T TP63 Silent p.L335L 0.25 TCGA-FW-A3R5-06 3 189586385 189586385 C T TP63 Nonsense_Mutation p.R337* 0.19 TCGA-FW-A3R5-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.20 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 3 189590653 189590653 G A TP63 Silent p.R406R 0.32 TCGA-FW-A3R5-06 3 189612091 189612091 C T TP63 Missense_Mutation p.H615Y 0.30 deleterious(0.01) benign(0.433) TCGA-FW-A3R5-06 3 189612096 189612096 C T TP63 Silent p.L616L 0.23 TCGA-FW-A3R5-06 3 189675740 189675740 C T LEPREL1 Silent p.G696G 0.22 TCGA-FW-A3R5-06 3 189689737 189689737 C T LEPREL1 Missense_Mutation p.D587N 0.27 tolerated(0.42) benign(0.241) TCGA-FW-A3R5-06 3 189705318 189705318 C T LEPREL1 Missense_Mutation p.E366K 0.37 tolerated(0.17) benign(0.027) TCGA-FW-A3R5-06 3 189706735 189706735 G A LEPREL1 Missense_Mutation p.P306S 0.31 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 3 189706760 189706760 G A LEPREL1 Silent p.R297R 0.15 TCGA-FW-A3R5-06 3 190039867 190039867 G A CLDN1 Silent p.A43A 0.20 TCGA-FW-A3R5-06 3 190147432 190147432 G A TMEM207 Silent p.G131G 0.17 TCGA-FW-A3R5-06 3 190158179 190158179 C T TMEM207 Splice_Site p.X53_splice 0.22 TCGA-FW-A3R5-06 3 191107287 191107287 C T CCDC50 Missense_Mutation p.P442L 0.32 deleterious(0.04) benign(0.222) TCGA-FW-A3R5-06 3 192053172 192053172 C G FGF12 Missense_Mutation p.G131A 0.17 tolerated(0.91) benign(0.012) TCGA-FW-A3R5-06 3 192053205 192053205 C T FGF12 Missense_Mutation p.G120E 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 192078283 192078283 C T FGF12 Missense_Mutation p.G82R 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 3 19295170 19295170 C T KCNH8 Missense_Mutation p.A34V 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 193002904 193002904 C T ATP13A5 Missense_Mutation p.E1009K 0.22 tolerated(0.88) benign(0.002) TCGA-FW-A3R5-06 3 193080175 193080175 C T ATP13A5 Silent p.E177E 0.30 TCGA-FW-A3R5-06 3 193120382 193120382 G A ATP13A4 3'UTR 0.48 TCGA-FW-A3R5-06 3 193120444 193120444 G A ATP13A4 Silent p.L1196L 0.46 TCGA-FW-A3R5-06 3 193166058 193166058 C T ATP13A4 Missense_Mutation p.E697K 0.41 tolerated(0.96) benign(0.006) TCGA-FW-A3R5-06 3 193201771 193201771 G A ATP13A4 Silent p.L254L 0.42 TCGA-FW-A3R5-06 3 193361862 193361862 C T OPA1 Silent p.L508L 0.43 TCGA-FW-A3R5-06 3 194062985 194062985 G A CPN2 Silent p.S149S 0.32 TCGA-FW-A3R5-06 3 194080213 194080213 G A LRRC15 Silent p.T526T 0.23 TCGA-FW-A3R5-06 3 194117702 194117702 C T GP5 Missense_Mutation p.R437Q 0.88 tolerated(0.73) benign(0.015) TCGA-FW-A3R5-06 3 194118751 194118751 G A GP5 Silent p.S87S 0.40 TCGA-FW-A3R5-06 3 194343970 194343970 G A TMEM44 Missense_Mutation p.P199S 0.32 tolerated(0.06) probably_damaging(0.954) TCGA-FW-A3R5-06 3 194344019 194344019 G A TMEM44 Silent p.G182G 0.41 TCGA-FW-A3R5-06 3 194392955 194392955 C T LSG1 5'UTR 0.27 TCGA-FW-A3R5-06 3 19492780 19492780 C T KCNH8 Missense_Mutation p.S570F 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 3 195490982 195490982 G A MUC4 Missense_Mutation p.L4660F 0.33 probably_damaging(0.961) TCGA-FW-A3R5-06 3 19575479 19575479 C T KCNH8 Missense_Mutation p.S1071F 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 196053858 196053858 C T TM4SF19 Missense_Mutation p.G83S 0.22 tolerated(0.3) benign(0.05) TCGA-FW-A3R5-06 3 196388524 196388524 C T NRROS Silent p.I670I 0.35 TCGA-FW-A3R5-06 3 196388594 196388594 C T NRROS 3'UTR 0.40 TCGA-FW-A3R5-06 3 196388614 196388614 C T NRROS 3'UTR 0.43 TCGA-FW-A3R5-06 3 196749920 196749920 G A MFI2 Silent p.S184S 0.46 TCGA-FW-A3R5-06 3 197239115 197239115 G A BDH1 Missense_Mutation p.P228L 0.43 tolerated(0.08) possibly_damaging(0.516) TCGA-FW-A3R5-06 3 197273245 197273245 C T BDH1 Missense_Mutation p.E24K 0.50 tolerated_low_confidence(0.59) benign(0.002) TCGA-FW-A3R5-06 3 197273324 197273324 G A BDH1 5'UTR 0.19 TCGA-FW-A3R5-06 3 197703506 197703506 G A LMLN Missense_Mutation p.D157N 0.47 tolerated(0.21) probably_damaging(0.988) TCGA-FW-A3R5-06 3 197765482 197765482 C T LMLN Silent p.L675L 0.21 TCGA-FW-A3R5-06 3 19947154 19947154 C T EFHB Missense_Mutation p.R459Q 0.26 deleterious(0.03) benign(0.038) TCGA-FW-A3R5-06 3 19974856 19974856 G A EFHB Missense_Mutation p.P219S 0.26 tolerated_low_confidence(1) benign(0.002) TCGA-FW-A3R5-06 3 20161138 20161138 C T KAT2B Missense_Mutation p.S400L 0.32 tolerated(0.39) benign(0.028) TCGA-FW-A3R5-06 3 20216529 20216529 G A SGOL1 Missense_Mutation p.P165L 0.33 tolerated(0.54) benign(0.006) TCGA-FW-A3R5-06 3 21462834 21462834 G A ZNF385D Missense_Mutation p.P354S 0.20 tolerated(0.09) benign(0.006) TCGA-FW-A3R5-06 3 21478515 21478515 G A ZNF385D Missense_Mutation p.S207L 0.12 tolerated(0.05) probably_damaging(0.968) TCGA-FW-A3R5-06 3 21552453 21552453 G A ZNF385D Silent p.A113A 0.26 TCGA-FW-A3R5-06 3 21552454 21552454 G A ZNF385D Missense_Mutation p.A113V 0.26 deleterious(0) benign(0.086) TCGA-FW-A3R5-06 3 21606135 21606135 C T ZNF385D Silent p.G69G 0.22 TCGA-FW-A3R5-06 3 21606158 21606158 C T ZNF385D Missense_Mutation p.A62T 0.26 deleterious(0) probably_damaging(0.956) TCGA-FW-A3R5-06 3 21606170 21606170 G A ZNF385D Missense_Mutation p.P58S 0.20 deleterious(0) benign(0.026) TCGA-FW-A3R5-06 3 22424080 22424080 C T HMGB1P5 RNA 0.28 TCGA-FW-A3R5-06 3 23250314 23250314 G A UBE2E2 Missense_Mutation p.E42K 0.24 tolerated(0.14) benign(0.292) TCGA-FW-A3R5-06 3 23541152 23541152 C T UBE2E2 Missense_Mutation p.P94L 0.18 deleterious(0.02) possibly_damaging(0.907) TCGA-FW-A3R5-06 3 24003559 24003559 C T NR1D2 Silent p.F203F 0.33 TCGA-FW-A3R5-06 3 24164187 24164187 G A THRB 3'UTR 0.33 TCGA-FW-A3R5-06 3 24164366 24164366 C T THRB 3'UTR 0.24 TCGA-FW-A3R5-06 3 24164462 24164462 G A THRB Silent p.A433A 0.30 TCGA-FW-A3R5-06 3 24185163 24185163 C T THRB Silent p.R189R 0.27 TCGA-FW-A3R5-06 3 24185170 24185170 G A THRB Missense_Mutation p.A187V 0.08 tolerated(0.06) benign(0.178) TCGA-FW-A3R5-06 3 24188277 24188277 G A THRB Missense_Mutation p.P141S 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.734) TCGA-FW-A3R5-06 3 25216031 25216031 C T AC133680.1 3'Flank 0.25 TCGA-FW-A3R5-06 3 25665215 25665215 G A TOP2B Missense_Mutation p.P835S 0.25 tolerated(0.1) benign(0.43) TCGA-FW-A3R5-06 3 25674066 25674066 G A TOP2B Silent p.N374N 0.21 TCGA-FW-A3R5-06 3 25775392 25775392 G A NGLY1 Nonsense_Mutation p.R411* 0.18 TCGA-FW-A3R5-06 3 25832704 25832704 C T OXSM Missense_Mutation p.R65C 0.30 deleterious(0.01) benign(0.089) TCGA-FW-A3R5-06 3 26751374 26751374 C T LRRC3B Silent p.L71L 0.24 TCGA-FW-A3R5-06 3 26751819 26751819 C T LRRC3B Missense_Mutation p.S219L 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-FW-A3R5-06 3 27204092 27204092 G A NEK10 Missense_Mutation p.A957V 0.21 deleterious(0.03) benign(0.111) TCGA-FW-A3R5-06 3 27333047 27333047 G A NEK10 Silent p.F468F 0.30 TCGA-FW-A3R5-06 3 27343200 27343200 G A NEK10 Silent p.F385F 0.20 TCGA-FW-A3R5-06 3 27350447 27350447 G A NEK10 Missense_Mutation p.S229F 0.24 deleterious(0) possibly_damaging(0.506) TCGA-FW-A3R5-06 3 27473142 27473142 G A SLC4A7 Missense_Mutation p.S257F 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 3 28476733 28476733 C T ZCWPW2 Silent p.F155F 0.14 TCGA-FW-A3R5-06 3 2924928 2924928 G A CNTN4 Missense_Mutation p.G251E 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 2967321 2967321 C T CNTN4 Missense_Mutation p.P406S 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 3 2967436 2967436 G A CNTN4 Missense_Mutation p.G444E 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 3 3076327 3076327 C T CNTN4 Missense_Mutation p.P599S 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 3 3076448 3076448 C T CNTN4 Missense_Mutation p.S639F 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-FW-A3R5-06 3 3081678 3081678 G A CNTN4 Intron 0.30 TCGA-FW-A3R5-06 3 30827849 30827849 C T GADL1 Missense_Mutation p.E434K 0.35 tolerated(0.09) benign(0.187) TCGA-FW-A3R5-06 3 3084090 3084090 G A CNTN4 Missense_Mutation p.R832Q 0.33 deleterious(0.01) benign(0.022) TCGA-FW-A3R5-06 3 3084710 3084710 G A CNTN4 Missense_Mutation p.R854Q 0.20 deleterious(0.05) benign(0.01) TCGA-FW-A3R5-06 3 3085322 3085322 C T CNTN4 Silent p.S915S 0.27 TCGA-FW-A3R5-06 3 30885930 30885930 G A GADL1 Missense_Mutation p.S227F 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-FW-A3R5-06 3 3118303 3118303 C T IL5RA Missense_Mutation p.E335K 0.14 tolerated(0.87) benign(0.004) TCGA-FW-A3R5-06 3 31710235 31710235 G A OSBPL10 Silent p.F665F 0.32 TCGA-FW-A3R5-06 3 31712336 31712336 C T OSBPL10 Silent p.A622A 0.31 TCGA-FW-A3R5-06 3 31712394 31712394 G A OSBPL10 Missense_Mutation p.P603L 0.07 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 3 31743882 31743882 G A OSBPL10 Missense_Mutation p.S405L 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 31774775 31774775 C T OSBPL10 Missense_Mutation p.E357K 0.18 tolerated(0.6) benign(0.004) TCGA-FW-A3R5-06 3 31917963 31917963 G A OSBPL10 Nonsense_Mutation p.R167* 0.30 TCGA-FW-A3R5-06 3 32030581 32030581 G A ZNF860 Missense_Mutation p.E4K 0.25 tolerated(0.08) benign(0.292) TCGA-FW-A3R5-06 3 32031756 32031756 G A ZNF860 Silent p.G395G 0.18 TCGA-FW-A3R5-06 3 32031883 32031883 C T ZNF860 Missense_Mutation p.R438C 0.21 tolerated(0.24) benign(0.315) TCGA-FW-A3R5-06 3 32031894 32031894 C T ZNF860 Silent p.L441L 0.32 TCGA-FW-A3R5-06 3 32927476 32927476 G A TRIM71 Silent p.A357A 0.34 TCGA-FW-A3R5-06 3 32932943 32932943 C T TRIM71 Silent p.S749S 0.13 TCGA-FW-A3R5-06 3 32933287 32933287 G A TRIM71 Missense_Mutation p.R864Q 0.09 tolerated(0.16) probably_damaging(0.998) TCGA-FW-A3R5-06 3 33093395 33093395 G A GLB1 Silent p.A298A 0.25 TCGA-FW-A3R5-06 3 33114106 33114106 G A GLB1 Missense_Mutation p.R59C 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 33134649 33134649 G A TMPPE Missense_Mutation p.H347Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 33134930 33134930 G A TMPPE Missense_Mutation p.S253L 0.19 tolerated(0.14) benign(0.168) TCGA-FW-A3R5-06 3 33249379 33249379 G A SUSD5 Silent p.I110I 0.29 TCGA-FW-A3R5-06 3 33644589 33644589 G A CLASP2 Silent p.S594S 0.38 TCGA-FW-A3R5-06 3 33650113 33650113 G A CLASP2 Missense_Mutation p.S466L 0.32 deleterious(0) benign(0.403) TCGA-FW-A3R5-06 3 33877622 33877622 C G PDCD6IP Silent p.A312A 0.30 TCGA-FW-A3R5-06 3 35763096 35763096 G A ARPP21 Splice_Site p.X298_splice 0.19 TCGA-FW-A3R5-06 3 35778739 35778739 G A ARPP21 Missense_Mutation p.R476Q 0.49 deleterious(0.04) benign(0.135) TCGA-FW-A3R5-06 3 35781030 35781030 C T ARPP21 Silent p.P623P 0.32 TCGA-FW-A3R5-06 3 35833903 35833903 G A ARPP21 Missense_Mutation p.G689R 0.28 deleterious(0.01) benign(0.444) TCGA-FW-A3R5-06 3 36524562 36524562 C T STAC Missense_Mutation p.P156L 0.14 tolerated(0.13) benign(0.014) TCGA-FW-A3R5-06 3 36570342 36570342 G A STAC Silent p.G325G 0.30 TCGA-FW-A3R5-06 3 36756807 36756807 C T DCLK3 3'UTR 0.38 TCGA-FW-A3R5-06 3 36759506 36759506 G A DCLK3 Missense_Mutation p.S583F 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 36759570 36759570 C T DCLK3 Missense_Mutation p.E562K 0.12 deleterious(0.04) possibly_damaging(0.532) TCGA-FW-A3R5-06 3 36778713 36778713 G A DCLK3 Missense_Mutation p.P480S 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 36778896 36778896 C T DCLK3 Missense_Mutation p.E419K 0.21 deleterious(0.01) possibly_damaging(0.658) TCGA-FW-A3R5-06 3 36779911 36779911 G A DCLK3 Silent p.P80P 0.30 TCGA-FW-A3R5-06 3 36779912 36779912 G A DCLK3 Missense_Mutation p.P80L 0.30 deleterious(0.04) benign(0.053) TCGA-FW-A3R5-06 3 36869813 36869813 G A TRANK1 Missense_Mutation p.R2911W 0.33 tolerated_low_confidence(0.15) possibly_damaging(0.724) TCGA-FW-A3R5-06 3 36872640 36872640 C T TRANK1 Missense_Mutation p.E2768K 0.33 tolerated(0.18) benign(0.033) TCGA-FW-A3R5-06 3 36872942 36872942 G A TRANK1 Missense_Mutation p.S2667F 0.22 tolerated(0.08) benign(0.013) TCGA-FW-A3R5-06 3 36873264 36873264 G A TRANK1 Missense_Mutation p.P2560S 0.26 tolerated(0.09) possibly_damaging(0.78) TCGA-FW-A3R5-06 3 36873265 36873265 G A TRANK1 Silent p.C2559C 0.27 TCGA-FW-A3R5-06 3 36873661 36873661 C T TRANK1 Nonsense_Mutation p.W2427* 0.25 TCGA-FW-A3R5-06 3 36873950 36873950 C T TRANK1 Missense_Mutation p.G2331E 0.31 tolerated(0.12) benign(0.099) TCGA-FW-A3R5-06 3 36874038 36874038 C T TRANK1 Missense_Mutation p.E2302K 0.30 tolerated(0.2) benign(0.424) TCGA-FW-A3R5-06 3 36874097 36874097 G A TRANK1 Missense_Mutation p.S2282F 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 36874347 36874347 G A TRANK1 Missense_Mutation p.P2199S 0.30 tolerated(0.17) benign(0.057) TCGA-FW-A3R5-06 3 36874348 36874348 G A TRANK1 Silent p.F2198F 0.30 TCGA-FW-A3R5-06 3 36875124 36875124 C T TRANK1 Missense_Mutation p.D1940N 0.27 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 3 36884182 36884182 G A TRANK1 Silent p.F1693F 0.71 TCGA-FW-A3R5-06 3 36888828 36888828 C T TRANK1 Missense_Mutation p.E1589K 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 36893237 36893237 G A TRANK1 Silent p.L1576L 0.19 TCGA-FW-A3R5-06 3 36893670 36893670 C T TRANK1 Silent p.R1528R 0.31 TCGA-FW-A3R5-06 3 36893702 36893702 C T TRANK1 Missense_Mutation p.D1518N 0.14 deleterious(0.02) benign(0.173) TCGA-FW-A3R5-06 3 36893798 36893798 G A TRANK1 Nonsense_Mutation p.Q1486* 0.18 TCGA-FW-A3R5-06 3 36897018 36897018 G A TRANK1 Nonsense_Mutation p.Q1355* 0.22 TCGA-FW-A3R5-06 3 36897082 36897082 C T TRANK1 Silent p.G1333G 0.28 TCGA-FW-A3R5-06 3 36897586 36897586 G A TRANK1 Silent p.F1165F 0.30 TCGA-FW-A3R5-06 3 36898704 36898704 C T TRANK1 Missense_Mutation p.E793K 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 36898763 36898763 C T TRANK1 Nonsense_Mutation p.W773* 0.20 TCGA-FW-A3R5-06 3 36898953 36898953 G A TRANK1 Missense_Mutation p.L710F 0.26 tolerated(0.57) benign(0.06) TCGA-FW-A3R5-06 3 36899114 36899114 C T TRANK1 Missense_Mutation p.G656E 0.20 tolerated(0.42) benign(0.002) TCGA-FW-A3R5-06 3 37034690 37034690 G A EPM2AIP1 5'UTR 0.26 TCGA-FW-A3R5-06 3 37067192 37067192 C T MLH1 Missense_Mutation p.S368L 0.38 tolerated(0.16) benign(0.003) TCGA-FW-A3R5-06 3 37363342 37363342 C T GOLGA4 Missense_Mutation p.R578W 0.34 benign(0.009) TCGA-FW-A3R5-06 3 37388776 37388776 C T GOLGA4 Missense_Mutation p.R2204C 0.10 probably_damaging(0.969) TCGA-FW-A3R5-06 3 37514853 37514853 C T ITGA9 Missense_Mutation p.R108W 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-FW-A3R5-06 3 37514875 37514875 C T ITGA9 Missense_Mutation p.T115I 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 37670762 37670762 G A ITGA9 Missense_Mutation p.E592K 0.24 tolerated(0.05) possibly_damaging(0.61) TCGA-FW-A3R5-06 3 37670821 37670821 G A ITGA9 Silent p.K611K 0.24 TCGA-FW-A3R5-06 3 37725431 37725431 C T ITGA9 Silent p.L664L 0.37 TCGA-FW-A3R5-06 3 37725472 37725472 C T ITGA9 Missense_Mutation p.S678F 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 38045833 38045833 C T VILL Silent p.F631F 0.29 TCGA-FW-A3R5-06 3 38065836 38065836 C T PLCD1 Missense_Mutation p.R30Q 0.33 tolerated(0.37) benign(0) TCGA-FW-A3R5-06 3 38103775 38103775 C T DLEC1 Silent p.F263F 0.27 TCGA-FW-A3R5-06 3 38139114 38139114 G A DLEC1 Missense_Mutation p.E851K 0.43 deleterious(0) possibly_damaging(0.614) TCGA-FW-A3R5-06 3 38141867 38141867 C T DLEC1 Nonsense_Mutation p.Q939* 0.29 TCGA-FW-A3R5-06 3 38266165 38266165 C T OXSR1 Missense_Mutation p.S269L 0.25 tolerated(0.19) benign(0.385) TCGA-FW-A3R5-06 3 38307601 38307601 C T SLC22A13 Missense_Mutation p.L84F 0.12 tolerated(0.57) possibly_damaging(0.786) TCGA-FW-A3R5-06 3 38317409 38317409 C T SLC22A13 Silent p.L353L 0.26 TCGA-FW-A3R5-06 3 38317410 38317410 C T SLC22A13 Nonsense_Mutation p.Q354* 0.26 TCGA-FW-A3R5-06 3 38318867 38318867 C T SLC22A13 Missense_Mutation p.P523S 0.26 tolerated(0.7) benign(0.014) TCGA-FW-A3R5-06 3 38357818 38357818 G A SLC22A14 Silent p.A512A 0.24 TCGA-FW-A3R5-06 3 38357943 38357943 C T SLC22A14 Missense_Mutation p.S554F 0.30 tolerated(0.7) benign(0.004) TCGA-FW-A3R5-06 3 38520723 38520723 C T ACVR2B Silent p.L257L 0.28 TCGA-FW-A3R5-06 3 38539158 38539158 C T EXOG Missense_Mutation p.P68S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 38565541 38565541 C T EXOG Silent p.F265F 0.17 TCGA-FW-A3R5-06 3 38591833 38591833 C T SCN5A Silent p.R2010R 0.30 TCGA-FW-A3R5-06 3 38592720 38592720 C T SCN5A Missense_Mutation p.G1715S 0.26 deleterious(0.04) possibly_damaging(0.792) TCGA-FW-A3R5-06 3 38592977 38592977 C T SCN5A Missense_Mutation p.R1629Q 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 3 38593037 38593037 G A SCN5A Missense_Mutation p.S1609L 0.23 deleterious(0.04) benign(0.247) TCGA-FW-A3R5-06 3 38596017 38596017 G A SCN5A Silent p.F1522F 0.36 TCGA-FW-A3R5-06 3 38607954 38607954 G A SCN5A Silent p.G1262G 0.09 TCGA-FW-A3R5-06 3 38616851 38616851 G A SCN5A Silent p.I1201I 0.38 TCGA-FW-A3R5-06 3 38622674 38622674 G A SCN5A Silent p.P992P 0.29 TCGA-FW-A3R5-06 3 38622675 38622675 G A SCN5A Missense_Mutation p.P992L 0.29 tolerated(0.24) probably_damaging(0.954) TCGA-FW-A3R5-06 3 38627445 38627445 G A SCN5A Silent p.L842L 0.31 TCGA-FW-A3R5-06 3 38639232 38639232 C T SCN5A Silent p.Q750Q 0.21 TCGA-FW-A3R5-06 3 38646255 38646255 G A SCN5A Missense_Mutation p.P495S 0.33 tolerated(0.22) possibly_damaging(0.674) TCGA-FW-A3R5-06 3 38646287 38646287 G A SCN5A Missense_Mutation p.S484L 0.18 tolerated(0.35) benign(0.009) TCGA-FW-A3R5-06 3 38646359 38646359 G A SCN5A Missense_Mutation p.S460F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 3 38647586 38647586 G A SCN5A Silent p.F398F 0.17 TCGA-FW-A3R5-06 3 38655274 38655274 G A SCN5A Intron 0.30 TCGA-FW-A3R5-06 3 38739037 38739037 C T SCN10A Missense_Mutation p.E1892K 0.36 tolerated(0.23) possibly_damaging(0.873) TCGA-FW-A3R5-06 3 38739233 38739233 C T SCN10A Silent p.E1826E 0.16 TCGA-FW-A3R5-06 3 38739797 38739797 G A SCN10A Silent p.I1638I 0.26 TCGA-FW-A3R5-06 3 38743485 38743485 C T SCN10A Missense_Mutation p.S1501N 0.29 deleterious(0.04) benign(0.008) TCGA-FW-A3R5-06 3 38748773 38748773 G A SCN10A Silent p.P1461P 0.27 TCGA-FW-A3R5-06 3 38753715 38753715 G A SCN10A Silent p.F1342F 0.28 TCGA-FW-A3R5-06 3 38753835 38753835 G A SCN10A Silent p.L1302L 0.15 TCGA-FW-A3R5-06 3 38753876 38753876 G A SCN10A Missense_Mutation p.L1289F 0.21 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 3 38760200 38760200 C T SCN10A Missense_Mutation p.G1209S 0.23 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 38764987 38764987 C T SCN10A Missense_Mutation p.E1096K 0.26 tolerated(0.05) possibly_damaging(0.672) TCGA-FW-A3R5-06 3 38765020 38765020 C T SCN10A Missense_Mutation p.E1085K 0.24 deleterious(0) probably_damaging(0.923) TCGA-FW-A3R5-06 3 38766682 38766682 G A SCN10A Missense_Mutation p.P1071S 0.33 tolerated(0.57) benign(0.007) TCGA-FW-A3R5-06 3 38768370 38768370 G A SCN10A Silent p.F938F 0.24 TCGA-FW-A3R5-06 3 38770069 38770069 G A SCN10A Silent p.I868I 0.29 TCGA-FW-A3R5-06 3 38793802 38793802 G A SCN10A Missense_Mutation p.P555S 0.26 tolerated(0.55) benign(0.011) TCGA-FW-A3R5-06 3 38793807 38793807 G A SCN10A Missense_Mutation p.P553L 0.32 tolerated(0.13) benign(0.014) TCGA-FW-A3R5-06 3 38798333 38798333 C T SCN10A Missense_Mutation p.M374I 0.28 tolerated(0.07) benign(0.123) TCGA-FW-A3R5-06 3 38802870 38802870 C T SCN10A Silent p.L232L 0.23 TCGA-FW-A3R5-06 3 38830525 38830525 C T SCN10A Nonsense_Mutation p.W131* 0.30 TCGA-FW-A3R5-06 3 38835304 38835304 G A SCN10A Silent p.F66F 0.29 TCGA-FW-A3R5-06 3 38835344 38835344 G A SCN10A Missense_Mutation p.P53L 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 38835376 38835376 C T SCN10A Silent p.R42R 0.28 TCGA-FW-A3R5-06 3 3886707 3886707 G A LRRN1 Missense_Mutation p.E128K 0.28 deleterious(0) possibly_damaging(0.838) TCGA-FW-A3R5-06 3 3886862 3886862 G A LRRN1 Silent p.L179L 0.25 TCGA-FW-A3R5-06 3 3887076 3887076 C T LRRN1 Silent p.L251L 0.28 TCGA-FW-A3R5-06 3 3887440 3887440 C T LRRN1 Missense_Mutation p.P372L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 3888393 3888393 G A LRRN1 Missense_Mutation p.G690S 0.38 tolerated(0.74) benign(0.004) TCGA-FW-A3R5-06 3 38888235 38888235 C T SCN11A Missense_Mutation p.G1776R 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 3 38888670 38888670 C T SCN11A Missense_Mutation p.E1631K 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 3 38904723 38904723 C A SCN11A Missense_Mutation p.G1340V 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 38913777 38913777 C T SCN11A Silent p.V1134V 0.25 TCGA-FW-A3R5-06 3 38921528 38921528 G A SCN11A Silent p.I1102I 0.33 TCGA-FW-A3R5-06 3 38927686 38927686 C T SCN11A Missense_Mutation p.R960K 0.24 tolerated(0.71) benign(0.03) TCGA-FW-A3R5-06 3 38936375 38936375 C T SCN11A Silent p.R828R 0.27 TCGA-FW-A3R5-06 3 38938645 38938645 G A SCN11A Silent p.V698V 0.23 TCGA-FW-A3R5-06 3 38941495 38941495 G A SCN11A Missense_Mutation p.R638C 0.21 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 3 38941514 38941514 G A SCN11A Silent p.L631L 0.30 TCGA-FW-A3R5-06 3 38949552 38949552 G A SCN11A Missense_Mutation p.T454I 0.27 deleterious(0.01) benign(0.013) TCGA-FW-A3R5-06 3 38950520 38950520 C T SCN11A Missense_Mutation p.E423K 0.25 tolerated(0.09) probably_damaging(0.998) TCGA-FW-A3R5-06 3 38968413 38968413 G A SCN11A Silent p.F166F 0.08 TCGA-FW-A3R5-06 3 38988326 38988326 G A SCN11A Missense_Mutation p.P114S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 3 38991718 38991718 C T SCN11A Missense_Mutation p.E46K 0.38 tolerated(0.14) benign(0.035) TCGA-FW-A3R5-06 3 38991900 38991900 C T SCN11A 5'UTR 0.28 TCGA-FW-A3R5-06 3 38991947 38991947 G A SCN11A 5'UTR 0.38 TCGA-FW-A3R5-06 3 39156146 39156146 C T TTC21A Missense_Mutation p.S210L 0.31 tolerated(0.16) benign(0.009) TCGA-FW-A3R5-06 3 39170381 39170381 C T TTC21A Silent p.I625I 0.32 TCGA-FW-A3R5-06 3 39226093 39226093 A G XIRP1 Missense_Mutation p.V1615A 0.25 tolerated(0.67) benign(0) TCGA-FW-A3R5-06 3 39226715 39226715 G A XIRP1 Missense_Mutation p.P1408S 0.28 tolerated_low_confidence(0.51) benign(0.005) TCGA-FW-A3R5-06 3 39227429 39227429 C T XIRP1 Missense_Mutation p.E1170K 0.28 deleterious(0.01) benign(0.265) TCGA-FW-A3R5-06 3 39227430 39227430 C T XIRP1 Silent p.R1169R 0.28 TCGA-FW-A3R5-06 3 39228062 39228062 C T XIRP1 Missense_Mutation p.E959K 0.27 deleterious(0.02) benign(0.066) TCGA-FW-A3R5-06 3 39228121 39228121 C T XIRP1 Missense_Mutation p.S939N 0.24 tolerated(0.09) benign(0.248) TCGA-FW-A3R5-06 3 39229826 39229826 C T XIRP1 Missense_Mutation p.E371K 0.28 deleterious(0.01) probably_damaging(0.913) TCGA-FW-A3R5-06 3 39230162 39230162 C T XIRP1 Missense_Mutation p.E259K 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 39230877 39230877 C T XIRP1 Silent p.E20E 0.34 TCGA-FW-A3R5-06 3 39231008 39231008 G A XIRP1 5'UTR 0.32 TCGA-FW-A3R5-06 3 39306866 39306866 C T CX3CR1 3'UTR 0.26 TCGA-FW-A3R5-06 3 39307027 39307027 G A CX3CR1 Missense_Mutation p.S357F 0.33 tolerated(0.47) benign(0.289) TCGA-FW-A3R5-06 3 39307132 39307132 G A CX3CR1 Missense_Mutation p.P322L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 39374734 39374734 G A CCR8 Silent p.G304G 0.30 TCGA-FW-A3R5-06 3 39433010 39433010 C T SLC25A38 Missense_Mutation p.H119Y 0.08 deleterious(0.03) possibly_damaging(0.53) TCGA-FW-A3R5-06 3 39438154 39438154 C T SLC25A38 3'UTR 0.38 TCGA-FW-A3R5-06 3 402001 402001 G A CHL1 Silent p.R400R 0.20 TCGA-FW-A3R5-06 3 40208396 40208396 G A MYRIP Missense_Mutation p.E204K 0.27 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 3 40231732 40231732 G A MYRIP Silent p.R481R 0.24 TCGA-FW-A3R5-06 3 40231823 40231823 G A MYRIP Missense_Mutation p.E512K 0.30 deleterious(0.03) possibly_damaging(0.678) TCGA-FW-A3R5-06 3 40251444 40251444 G A MYRIP Missense_Mutation p.E589K 0.31 tolerated(0.05) benign(0.099) TCGA-FW-A3R5-06 3 40433618 40433618 G A ENTPD3 Missense_Mutation p.E49K 0.22 tolerated(0.9) benign(0.007) TCGA-FW-A3R5-06 3 40529675 40529675 C T ZNF619 Silent p.L598L 0.56 TCGA-FW-A3R5-06 3 41439581 41439581 G A ULK4 Missense_Mutation p.L1223F 0.25 deleterious(0.01) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 41759219 41759219 C T ULK4 Splice_Site p.X819_splice 0.21 TCGA-FW-A3R5-06 3 41795943 41795943 G A ULK4 Missense_Mutation p.P744L 0.17 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 3 41957532 41957532 G A ULK4 Missense_Mutation p.P247L 0.27 tolerated(0.11) benign(0.216) TCGA-FW-A3R5-06 3 42265288 42265288 C T TRAK1 3'UTR 0.33 TCGA-FW-A3R5-06 3 42299704 42299704 G A CCK Silent p.S78S 0.29 TCGA-FW-A3R5-06 3 424297 424297 G A CHL1 Missense_Mutation p.E707K 0.37 tolerated(0.28) possibly_damaging(0.473) TCGA-FW-A3R5-06 3 42445550 42445550 C T LYZL4 Missense_Mutation p.G120E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 42448815 42448815 C T LYZL4 5'UTR 0.35 TCGA-FW-A3R5-06 3 425526 425526 G A CHL1 Missense_Mutation p.R735K 0.28 tolerated(1) benign(0.028) TCGA-FW-A3R5-06 3 42567411 42567411 G A VIPR1 Missense_Mutation p.G109S 0.24 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 3 42577678 42577678 G A VIPR1 Missense_Mutation p.G427S 0.19 deleterious(0.04) benign(0.256) TCGA-FW-A3R5-06 3 42728211 42728211 C T KLHL40 Silent p.L367L 0.13 TCGA-FW-A3R5-06 3 42729691 42729691 C T KLHL40 Missense_Mutation p.L404F 0.28 deleterious(0.02) benign(0.367) TCGA-FW-A3R5-06 3 42732372 42732372 C T KLHL40 Silent p.F543F 0.24 TCGA-FW-A3R5-06 3 42733486 42733486 C T KLHL40 3'UTR 0.22 TCGA-FW-A3R5-06 3 42739045 42739045 G A HHATL Missense_Mutation p.P274S 0.31 tolerated(0.06) probably_damaging(0.951) TCGA-FW-A3R5-06 3 42739655 42739655 G A HHATL Silent p.T224T 0.33 TCGA-FW-A3R5-06 3 42754799 42754799 C T CCDC13 Silent p.E576E 0.09 TCGA-FW-A3R5-06 3 42754805 42754805 C T CCDC13 Silent p.V574V 0.09 TCGA-FW-A3R5-06 3 42906678 42906678 C T ACKR2 Silent p.F228F 0.34 TCGA-FW-A3R5-06 3 42915959 42915959 C T CYP8B1 Silent p.V450V 0.34 TCGA-FW-A3R5-06 3 42916090 42916090 G A CYP8B1 Missense_Mutation p.R407C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 3 42916456 42916456 C T CYP8B1 Missense_Mutation p.G285R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 42916457 42916457 C T CYP8B1 Silent p.Q284Q 0.33 TCGA-FW-A3R5-06 3 42916519 42916519 C T CYP8B1 Missense_Mutation p.E264K 0.34 deleterious(0) possibly_damaging(0.82) TCGA-FW-A3R5-06 3 42916520 42916520 C T CYP8B1 Silent p.R263R 0.34 TCGA-FW-A3R5-06 3 42916742 42916742 C T CYP8B1 Silent p.T189T 0.16 TCGA-FW-A3R5-06 3 42917072 42917072 G A CYP8B1 Silent p.F79F 0.26 TCGA-FW-A3R5-06 3 42949635 42949635 C T ZNF662 Missense_Mutation p.S71F 0.29 deleterious(0.02) benign(0.022) TCGA-FW-A3R5-06 3 42956099 42956099 C T ZNF662 Silent p.L204L 0.27 TCGA-FW-A3R5-06 3 42956100 42956100 C T ZNF662 Missense_Mutation p.L205F 0.28 tolerated(0.19) benign(0.025) TCGA-FW-A3R5-06 3 42956891 42956891 G A ZNF662 3'UTR 0.24 TCGA-FW-A3R5-06 3 432479 432479 G A CHL1 Missense_Mutation p.G856R 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 432714 432714 G A CHL1 Missense_Mutation p.G888E 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 3 4354988 4354988 C T SETMAR Missense_Mutation p.S188F 0.25 deleterious_low_confidence(0) benign(0.223) TCGA-FW-A3R5-06 3 43596891 43596891 G A ANO10 Missense_Mutation p.P516L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 43753252 43753252 C T ABHD5 Silent p.D186D 0.30 TCGA-FW-A3R5-06 3 43753352 43753352 T G ABHD5 Missense_Mutation p.F220V 0.32 deleterious(0.02) benign(0.063) TCGA-FW-A3R5-06 3 43756497 43756497 C T ABHD5 Silent p.F240F 0.08 TCGA-FW-A3R5-06 3 44402978 44402978 C T TCAIM Missense_Mutation p.S96F 0.12 deleterious(0.02) benign(0.136) TCGA-FW-A3R5-06 3 44488448 44488448 G A ZNF445 Silent p.F905F 0.30 TCGA-FW-A3R5-06 3 44489665 44489665 G A ZNF445 Missense_Mutation p.L500F 0.37 deleterious(0) possibly_damaging(0.849) TCGA-FW-A3R5-06 3 44612310 44612310 C T ZKSCAN7 Nonsense_Mutation p.Q570* 0.24 TCGA-FW-A3R5-06 3 44635928 44635928 G A ZNF660 Silent p.K81K 0.23 TCGA-FW-A3R5-06 3 44684449 44684449 C T ZNF197 Silent p.F609F 0.37 TCGA-FW-A3R5-06 3 447438 447438 C T CHL1 3'UTR 0.30 TCGA-FW-A3R5-06 3 44761737 44761737 G A ZNF502 5'UTR 0.12 TCGA-FW-A3R5-06 3 44843419 44843419 C T KIF15 Missense_Mutation p.R488C 0.29 tolerated(0.05) benign(0.051) TCGA-FW-A3R5-06 3 44951664 44951664 G A TGM4 Silent p.E470E 0.33 TCGA-FW-A3R5-06 3 44974644 44974644 G A ZDHHC3 Silent p.F192F 0.19 TCGA-FW-A3R5-06 3 45030635 45030635 G A EXOSC7 Missense_Mutation p.D21N 0.23 tolerated(0.55) benign(0.005) TCGA-FW-A3R5-06 3 45077054 45077054 C T CLEC3B Silent p.L83L 0.41 TCGA-FW-A3R5-06 3 45127468 45127468 C T CDCP1 Missense_Mutation p.G725R 0.08 tolerated(0.45) benign(0.019) TCGA-FW-A3R5-06 3 45132974 45132974 G A CDCP1 Missense_Mutation p.P562S 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 45134815 45134815 C T CDCP1 Silent p.E527E 0.31 TCGA-FW-A3R5-06 3 45134824 45134824 G A CDCP1 Silent p.F524F 0.31 TCGA-FW-A3R5-06 3 45152068 45152068 C T CDCP1 Silent p.G307G 0.27 TCGA-FW-A3R5-06 3 45554637 45554637 C T LARS2 Missense_Mutation p.H591Y 0.08 tolerated(0.13) benign(0.008) TCGA-FW-A3R5-06 3 45557701 45557701 C T LARS2 Silent p.I659I 0.31 TCGA-FW-A3R5-06 3 45561771 45561771 C T LARS2 Missense_Mutation p.L759F 0.12 tolerated(0.07) benign(0.169) TCGA-FW-A3R5-06 3 45637408 45637408 C T LIMD1 Missense_Mutation p.S346F 0.17 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 3 45773594 45773594 C T SACM1L Nonsense_Mutation p.R351* 0.26 TCGA-FW-A3R5-06 3 45800409 45800409 C T SLC6A20 3'UTR 0.35 TCGA-FW-A3R5-06 3 45807055 45807055 C T SLC6A20 Missense_Mutation p.S426N 0.33 tolerated(0.07) benign(0.014) TCGA-FW-A3R5-06 3 45817280 45817280 G A SLC6A20 Silent p.I185I 0.28 TCGA-FW-A3R5-06 3 45817352 45817352 C T SLC6A20 Silent p.Q161Q 0.22 TCGA-FW-A3R5-06 3 45817476 45817476 G A SLC6A20 Missense_Mutation p.P120L 0.35 deleterious(0.01) possibly_damaging(0.792) TCGA-FW-A3R5-06 3 45943405 45943405 G A CCR9 3'UTR 0.29 TCGA-FW-A3R5-06 3 45972760 45972760 G A FYCO1 Missense_Mutation p.L1352F 0.23 tolerated(0.11) benign(0.194) TCGA-FW-A3R5-06 3 45988648 45988648 G A CXCR6 Silent p.Q225Q 0.22 TCGA-FW-A3R5-06 3 46023068 46023068 G A FYCO1 Silent p.L52L 0.18 TCGA-FW-A3R5-06 3 46062465 46062465 G A XCR1 Silent p.F325F 0.33 TCGA-FW-A3R5-06 3 46062951 46062951 G A XCR1 Silent p.L163L 0.33 TCGA-FW-A3R5-06 3 46244856 46244856 G A CCR1 Missense_Mutation p.H317Y 0.37 tolerated(0.12) benign(0.002) TCGA-FW-A3R5-06 3 46244896 46244896 G A CCR1 Silent p.F303F 0.35 TCGA-FW-A3R5-06 3 46245220 46245220 C T CCR1 Nonsense_Mutation p.W195* 0.34 TCGA-FW-A3R5-06 3 46306722 46306722 G A CCR3 Missense_Mutation p.E46K 0.31 tolerated(0.52) benign(0.085) TCGA-FW-A3R5-06 3 46306935 46306935 G A CCR3 Missense_Mutation p.G117R 0.28 tolerated(0.41) benign(0.001) TCGA-FW-A3R5-06 3 46307639 46307639 C T CCR3 Silent p.F351F 0.11 TCGA-FW-A3R5-06 3 46399344 46399344 G A CCR2 Missense_Mutation p.G109E 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-FW-A3R5-06 3 46414494 46414494 C T CCR5 Missense_Mutation p.P34L 0.24 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 3 46415189 46415189 C T CCR5 Silent p.L266L 0.26 TCGA-FW-A3R5-06 3 46450311 46450311 C T CCRL2 Silent p.F259F 0.27 TCGA-FW-A3R5-06 3 46497339 46497339 C T LTF Missense_Mutation p.G149E 0.34 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 46497370 46497370 G A LTF Missense_Mutation p.R139C 0.25 deleterious(0) possibly_damaging(0.661) TCGA-FW-A3R5-06 3 46541948 46541948 G A RTP3 Missense_Mutation p.M86I 0.06 deleterious(0) probably_damaging(0.976) TCGA-FW-A3R5-06 3 46593050 46593050 G A LRRC2 Missense_Mutation p.S11F 0.32 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 3 46619331 46619331 G A TDGF1 5'UTR 0.27 TCGA-FW-A3R5-06 3 46713053 46713053 C T ALS2CL Silent p.E902E 0.18 TCGA-FW-A3R5-06 3 46713060 46713060 C T ALS2CL Missense_Mutation p.G900E 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 46713683 46713683 G T ALS2CL Silent p.S827S 0.21 TCGA-FW-A3R5-06 3 46713684 46713684 G A ALS2CL Missense_Mutation p.S827F 0.37 deleterious(0) benign(0.216) TCGA-FW-A3R5-06 3 46718188 46718188 G A ALS2CL Silent p.L658L 0.34 TCGA-FW-A3R5-06 3 46727042 46727042 G A ALS2CL Silent p.L253L 0.20 TCGA-FW-A3R5-06 3 46727878 46727878 G A ALS2CL Silent p.L196L 0.27 TCGA-FW-A3R5-06 3 46729621 46729621 C T ALS2CL Missense_Mutation p.R90Q 0.11 tolerated(0.53) benign(0.002) TCGA-FW-A3R5-06 3 46753846 46753846 G A PRSS50 Nonsense_Mutation p.Q350* 0.19 TCGA-FW-A3R5-06 3 46754528 46754528 C T PRSS50 Missense_Mutation p.E262K 0.30 deleterious(0.03) possibly_damaging(0.896) TCGA-FW-A3R5-06 3 46757161 46757161 G A PRSS50 Missense_Mutation p.P112S 0.17 tolerated(0.18) possibly_damaging(0.448) TCGA-FW-A3R5-06 3 46874578 46874578 G A PRSS42 Nonsense_Mutation p.R164* 0.37 TCGA-FW-A3R5-06 3 46899877 46899877 C T MYL3 Missense_Mutation p.E186K 0.18 deleterious(0.03) possibly_damaging(0.675) TCGA-FW-A3R5-06 3 46935494 46935494 G A PTH1R Missense_Mutation p.R58K 0.11 tolerated(0.81) benign(0.013) TCGA-FW-A3R5-06 3 4693861 4693861 C T ITPR1 Missense_Mutation p.R304C 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 46945084 46945084 G A PTH1R Missense_Mutation p.E574K 0.31 tolerated(0.12) benign(0.37) TCGA-FW-A3R5-06 3 4702675 4702675 C T ITPR1 Silent p.N370N 0.23 TCGA-FW-A3R5-06 3 47031040 47031040 C T NBEAL2 Silent p.F171F 0.33 TCGA-FW-A3R5-06 3 4703806 4703806 C T ITPR1 Missense_Mutation p.A416V 0.28 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 3 47041164 47041164 C T NBEAL2 Missense_Mutation p.L1250F 0.19 deleterious(0.05) benign(0.002) TCGA-FW-A3R5-06 3 47041551 47041551 C T NBEAL2 Missense_Mutation p.P1321L 0.24 tolerated(0.48) benign(0.002) TCGA-FW-A3R5-06 3 47043884 47043884 C T NBEAL2 Silent p.F1725F 0.27 TCGA-FW-A3R5-06 3 47162320 47162320 G A SETD2 Missense_Mutation p.T1269I 0.30 deleterious(0) possibly_damaging(0.556) TCGA-FW-A3R5-06 3 4718406 4718406 G A ITPR1 Missense_Mutation p.G948D 0.34 tolerated(0.65) possibly_damaging(0.833) TCGA-FW-A3R5-06 3 47282381 47282381 C T KIF9 Missense_Mutation p.E612K 0.31 tolerated(0.24) benign(0.002) TCGA-FW-A3R5-06 3 4732836 4732836 G A ITPR1 Silent p.E1264E 0.11 TCGA-FW-A3R5-06 3 47371532 47371532 C T KLHL18 Nonsense_Mutation p.Q165* 0.24 TCGA-FW-A3R5-06 3 47384223 47384223 C T KLHL18 Missense_Mutation p.T414I 0.28 deleterious(0.01) possibly_damaging(0.724) TCGA-FW-A3R5-06 3 47555083 47555083 C T ELP6 5'UTR 0.18 TCGA-FW-A3R5-06 3 47651609 47651609 G A SMARCC1 Missense_Mutation p.P997L 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 3 47703861 47703861 G A SMARCC1 Silent p.D707D 0.22 TCGA-FW-A3R5-06 3 47852157 47852157 T A DHX30 5'UTR 0.30 TCGA-FW-A3R5-06 3 47913525 47913525 G A MAP4 Silent p.A796A 0.26 TCGA-FW-A3R5-06 3 47950683 47950683 G A MAP4 Intron 0.23 TCGA-FW-A3R5-06 3 47958661 47958661 G A MAP4 Missense_Mutation p.P219L 0.24 deleterious(0) benign(0.016) TCGA-FW-A3R5-06 3 4808358 4808358 G A ITPR1 Missense_Mutation p.D1882N 0.33 tolerated(0.11) benign(0.125) TCGA-FW-A3R5-06 3 48209415 48209415 G A CDC25A Missense_Mutation p.S317F 0.24 deleterious(0.01) benign(0.315) TCGA-FW-A3R5-06 3 4829647 4829647 G A ITPR1 Missense_Mutation p.R2196Q 0.21 deleterious(0) benign(0.361) TCGA-FW-A3R5-06 3 4829654 4829654 G A ITPR1 Missense_Mutation p.M2198I 0.25 deleterious(0) benign(0.103) TCGA-FW-A3R5-06 3 4836859 4836859 G A ITPR1 Missense_Mutation p.G2292R 0.26 deleterious(0.03) benign(0.273) TCGA-FW-A3R5-06 3 48414334 48414334 C T FBXW12 Missense_Mutation p.S26F 0.15 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 3 48419867 48419867 C T FBXW12 Missense_Mutation p.P156S 0.09 deleterious(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 3 48451735 48451735 G A PLXNB1 Missense_Mutation p.R1859W 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 3 48451736 48451736 G A PLXNB1 Silent p.L1858L 0.16 TCGA-FW-A3R5-06 3 48461033 48461033 G A PLXNB1 Missense_Mutation p.P888S 0.25 tolerated(0.78) benign(0) TCGA-FW-A3R5-06 3 48461415 48461415 G A PLXNB1 Silent p.S760S 0.30 TCGA-FW-A3R5-06 3 48463602 48463602 G A PLXNB1 Missense_Mutation p.P478S 0.40 deleterious(0.02) probably_damaging(0.98) TCGA-FW-A3R5-06 3 48465262 48465262 G A PLXNB1 Silent p.L253L 0.16 TCGA-FW-A3R5-06 3 48501206 48501206 C T ATRIP Missense_Mutation p.L316F 0.19 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 4853129 4853129 G A ITPR1 Missense_Mutation p.E2470K 0.24 tolerated(0.8) benign(0.003) TCGA-FW-A3R5-06 3 48587373 48587373 G A PFKFB4 Missense_Mutation p.R79C 0.29 probably_damaging(1) TCGA-FW-A3R5-06 3 48602556 48602556 G A COL7A1 Missense_Mutation p.P2869L 0.15 benign(0.027) TCGA-FW-A3R5-06 3 48602929 48602929 C T COL7A1 Missense_Mutation p.R2814Q 0.33 benign(0.208) TCGA-FW-A3R5-06 3 48607739 48607739 G A COL7A1 Missense_Mutation p.P2470L 0.23 benign(0.345) TCGA-FW-A3R5-06 3 48609816 48609816 C T COL7A1 Silent p.E2325E 0.32 TCGA-FW-A3R5-06 3 48613161 48613161 G A COL7A1 Silent p.I1959I 0.29 TCGA-FW-A3R5-06 3 48614119 48614119 G A COL7A1 Missense_Mutation p.P1897L 0.31 unknown(0) TCGA-FW-A3R5-06 3 48614120 48614120 G A COL7A1 Missense_Mutation p.P1897S 0.31 unknown(0) TCGA-FW-A3R5-06 3 48615797 48615797 C T COL7A1 Missense_Mutation p.G1830E 0.27 unknown(0) TCGA-FW-A3R5-06 3 48616395 48616395 G A COL7A1 Intron 0.26 TCGA-FW-A3R5-06 3 48620047 48620047 G A COL7A1 Missense_Mutation p.P1520S 0.21 unknown(0) TCGA-FW-A3R5-06 3 48624743 48624743 G A COL7A1 Missense_Mutation p.P1007S 0.40 unknown(0) TCGA-FW-A3R5-06 3 48626890 48626890 G A COL7A1 Silent p.S728S 0.33 TCGA-FW-A3R5-06 3 48628970 48628970 C G COL7A1 Silent p.G521G 0.12 TCGA-FW-A3R5-06 3 48663735 48663735 G A SLC26A6 Silent p.T727T 0.13 TCGA-FW-A3R5-06 3 48669750 48669750 G A SLC26A6 Silent p.I171I 0.47 TCGA-FW-A3R5-06 3 48684206 48684206 G A CELSR3 Nonsense_Mutation p.R2429* 0.20 TCGA-FW-A3R5-06 3 48684207 48684207 G A CELSR3 Silent p.R2428R 0.21 TCGA-FW-A3R5-06 3 48685383 48685383 G A CELSR3 Silent p.A2340A 0.23 TCGA-FW-A3R5-06 3 48698262 48698262 G A CELSR3 Silent p.I602I 0.26 TCGA-FW-A3R5-06 3 48699764 48699764 G A CELSR3 Missense_Mutation p.P102S 0.28 tolerated_low_confidence(0.12) benign(0.001) TCGA-FW-A3R5-06 3 48699765 48699765 G A CELSR3 Silent p.P101P 0.27 TCGA-FW-A3R5-06 3 48716111 48716111 G A NCKIPSD Silent p.F617F 0.34 TCGA-FW-A3R5-06 3 48727117 48727117 G A IP6K2 Missense_Mutation p.R212C 0.33 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 3 49006032 49006032 C T ARIH2 Missense_Mutation p.P202S 0.29 tolerated(0.64) benign(0.024) TCGA-FW-A3R5-06 3 49012254 49012254 C T ARIH2 Missense_Mutation p.P298L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 49042403 49042403 C T P4HTM Missense_Mutation p.P333S 0.30 deleterious(0.05) probably_damaging(0.956) TCGA-FW-A3R5-06 3 49049243 49049243 C T WDR6 Silent p.L122L 0.27 TCGA-FW-A3R5-06 3 49094946 49094946 G A QRICH1 Silent p.P229P 0.31 TCGA-FW-A3R5-06 3 49146461 49146461 G A USP19 Missense_Mutation p.T1397I 0.19 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-FW-A3R5-06 3 49165917 49165917 G A LAMB2 Silent p.I664I 0.21 TCGA-FW-A3R5-06 3 49167284 49167284 G A LAMB2 Silent p.L465L 0.20 TCGA-FW-A3R5-06 3 49292849 49292849 G A CCDC36 Missense_Mutation p.D187N 0.29 deleterious(0.05) benign(0.221) TCGA-FW-A3R5-06 3 49394744 49394744 G A GPX1 3'UTR 0.32 TCGA-FW-A3R5-06 3 49395053 49395053 G A GPX1 Missense_Mutation p.A127V 0.33 tolerated(0.43) benign(0.002) TCGA-FW-A3R5-06 3 49395100 49395100 G A GPX1 Silent p.L111L 0.14 TCGA-FW-A3R5-06 3 49569672 49569672 C T DAG1 Silent p.F576F 0.42 TCGA-FW-A3R5-06 3 49662672 49662672 C T BSN Silent p.P163P 0.25 TCGA-FW-A3R5-06 3 49688113 49688113 C T BSN Silent p.T529T 0.31 TCGA-FW-A3R5-06 3 49688217 49688217 C T BSN Missense_Mutation p.P564L 0.12 unknown(0) TCGA-FW-A3R5-06 3 49690103 49690103 G A BSN Silent p.E1038E 0.39 TCGA-FW-A3R5-06 3 49691586 49691586 G A BSN Missense_Mutation p.G1533S 0.29 unknown(0) TCGA-FW-A3R5-06 3 49697935 49697935 C T BSN Missense_Mutation p.P2886L 0.22 unknown(0) TCGA-FW-A3R5-06 3 49698860 49698860 C T BSN Silent p.V3194V 0.14 TCGA-FW-A3R5-06 3 49699167 49699167 G A BSN Missense_Mutation p.D3297N 0.28 unknown(0) TCGA-FW-A3R5-06 3 49700328 49700328 G A BSN Silent p.E3579E 0.25 TCGA-FW-A3R5-06 3 49726071 49726071 G A MST1 Silent p.L18L 0.36 TCGA-FW-A3R5-06 3 49736512 49736512 C T RNF123 Silent p.A246A 0.22 TCGA-FW-A3R5-06 3 49750169 49750169 C T RNF123 Intron 0.30 TCGA-FW-A3R5-06 3 49836227 49836227 C T CDHR4 Intron 0.36 TCGA-FW-A3R5-06 3 49848490 49848490 C T UBA7 Nonsense_Mutation p.W386* 0.26 TCGA-FW-A3R5-06 3 49848734 49848734 C T UBA7 Missense_Mutation p.G365D 0.27 deleterious(0) possibly_damaging(0.847) TCGA-FW-A3R5-06 3 49866927 49866927 G A TRAIP Silent p.F417F 0.28 TCGA-FW-A3R5-06 3 49867482 49867482 G A TRAIP Missense_Mutation p.P353S 0.24 tolerated(0.88) benign(0.001) TCGA-FW-A3R5-06 3 49869412 49869412 G A TRAIP Missense_Mutation p.P325L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 49896972 49896972 C T CAMKV Missense_Mutation p.A429T 0.32 tolerated_low_confidence(0.09) probably_damaging(0.98) TCGA-FW-A3R5-06 3 49897923 49897923 C T CAMKV Missense_Mutation p.E279K 0.18 tolerated(0.26) probably_damaging(0.913) TCGA-FW-A3R5-06 3 49898258 49898258 C T CAMKV Silent p.E222E 0.28 TCGA-FW-A3R5-06 3 49898437 49898437 C T CAMKV Missense_Mutation p.G193S 0.33 deleterious(0.02) possibly_damaging(0.897) TCGA-FW-A3R5-06 3 49898976 49898976 C T CAMKV Missense_Mutation p.D113N 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 49932749 49932749 G A MST1R Missense_Mutation p.S1041F 0.30 deleterious(0) benign(0.287) TCGA-FW-A3R5-06 3 49941066 49941066 G A MST1R 5'UTR 0.29 TCGA-FW-A3R5-06 3 50099460 50099460 C T RBM6 Silent p.P835P 0.23 TCGA-FW-A3R5-06 3 50137905 50137905 C T RBM5 Intron 0.39 TCGA-FW-A3R5-06 3 50144242 50144242 C T RBM5 Missense_Mutation p.P300S 0.29 tolerated(0.07) probably_damaging(0.995) TCGA-FW-A3R5-06 3 50154643 50154643 C T RBM5 Intron 0.28 TCGA-FW-A3R5-06 3 50155850 50155850 C T RBM5 Silent p.V803V 0.12 TCGA-FW-A3R5-06 3 50220340 50220340 G A SEMA3F Missense_Mutation p.D303N 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 50220961 50220961 C T SEMA3F Silent p.P399P 0.31 TCGA-FW-A3R5-06 3 50222931 50222931 G A SEMA3F Silent p.E504E 0.25 TCGA-FW-A3R5-06 3 50225432 50225432 G A SEMA3F Missense_Mutation p.G748S 0.40 tolerated(0.46) benign(0.036) TCGA-FW-A3R5-06 3 50229138 50229138 C T GNAT1 5'UTR 0.25 TCGA-FW-A3R5-06 3 50252883 50252883 G A SLC38A3 RNA 0.16 TCGA-FW-A3R5-06 3 50252887 50252887 C T SLC38A3 RNA 0.25 TCGA-FW-A3R5-06 3 50253064 50253064 C T SLC38A3 RNA 0.08 TCGA-FW-A3R5-06 3 50293694 50293694 C T GNAI2 Missense_Mutation p.R179C 0.28 deleterious(0.02) benign(0.041) TCGA-FW-A3R5-06 3 50334221 50334221 G A NAT6 Missense_Mutation p.P247L 0.29 tolerated(0.12) benign(0.057) TCGA-FW-A3R5-06 3 50334222 50334222 G A NAT6 Missense_Mutation p.P247S 0.30 tolerated(0.24) benign(0.094) TCGA-FW-A3R5-06 3 50334496 50334496 G A NAT6 Silent p.P155P 0.28 TCGA-FW-A3R5-06 3 50363574 50363574 G A TUSC2 Missense_Mutation p.P104L 0.20 deleterious(0) possibly_damaging(0.451) TCGA-FW-A3R5-06 3 50380626 50380626 C T ZMYND10 Silent p.K174K 0.32 TCGA-FW-A3R5-06 3 50405101 50405101 C T CACNA2D2 Missense_Mutation p.G764S 0.34 deleterious(0) probably_damaging(0.944) TCGA-FW-A3R5-06 3 50405665 50405665 C T CACNA2D2 Missense_Mutation p.E690K 0.28 tolerated(0.07) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 50413309 50413309 G A CACNA2D2 Silent p.I592I 0.09 TCGA-FW-A3R5-06 3 50602982 50602982 G A C3orf18 Missense_Mutation p.P50L 0.28 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3R5-06 3 50684558 50684558 C T MAPKAPK3 Missense_Mutation p.S307L 0.41 tolerated(0.56) benign(0.086) TCGA-FW-A3R5-06 3 51265502 51265502 G A DOCK3 Missense_Mutation p.E544K 0.37 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 3 51347726 51347726 G A DOCK3 Missense_Mutation p.D996N 0.22 deleterious(0.03) possibly_damaging(0.848) TCGA-FW-A3R5-06 3 51370588 51370588 G A DOCK3 Splice_Site p.X1172_splice 0.20 TCGA-FW-A3R5-06 3 51387787 51387787 C T DOCK3 Silent p.V1357V 0.30 TCGA-FW-A3R5-06 3 51400016 51400016 C T DOCK3 Missense_Mutation p.S1735L 0.24 tolerated(0.41) benign(0.001) TCGA-FW-A3R5-06 3 51413243 51413243 C T DOCK3 Missense_Mutation p.P1826L 0.29 deleterious_low_confidence(0) benign(0.391) TCGA-FW-A3R5-06 3 51673920 51673920 C T RAD54L2 Silent p.Y712Y 0.24 TCGA-FW-A3R5-06 3 51675865 51675865 C T RAD54L2 Nonsense_Mutation p.R778* 0.53 TCGA-FW-A3R5-06 3 51679045 51679045 G A RAD54L2 Missense_Mutation p.G819E 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 51742999 51742999 C T GRM2 5'UTR 0.20 TCGA-FW-A3R5-06 3 51743021 51743021 C T GRM2 Silent p.L8L 0.25 TCGA-FW-A3R5-06 3 51749298 51749298 C T GRM2 Silent p.P503P 0.33 TCGA-FW-A3R5-06 3 51749831 51749831 C A GRM2 Missense_Mutation p.A681D 0.20 deleterious(0) possibly_damaging(0.555) TCGA-FW-A3R5-06 3 51749832 51749832 C T GRM2 Silent p.A681A 0.20 TCGA-FW-A3R5-06 3 51928899 51928899 G A IQCF1 3'UTR 0.12 TCGA-FW-A3R5-06 3 51928921 51928921 G A IQCF1 Silent p.F201F 0.17 TCGA-FW-A3R5-06 3 51937085 51937085 C T IQCF1 Silent p.K8K 0.25 TCGA-FW-A3R5-06 3 51969369 51969369 G A RRP9 Silent p.F320F 0.37 TCGA-FW-A3R5-06 3 51979178 51979178 C T PARP3 Missense_Mutation p.H274Y 0.28 deleterious(0) benign(0) TCGA-FW-A3R5-06 3 51982506 51982506 C T PARP3 3'UTR 0.29 TCGA-FW-A3R5-06 3 52003882 52003882 C T ABHD14B Intron 0.16 TCGA-FW-A3R5-06 3 52003883 52003883 C T ABHD14B Intron 0.17 TCGA-FW-A3R5-06 3 52097298 52097298 C T LINC00696 Silent p.T90T 0.32 TCGA-FW-A3R5-06 3 52255128 52255128 C T TLR9 3'UTR 0.25 TCGA-FW-A3R5-06 3 52256720 52256720 C T TLR9 Missense_Mutation p.E692K 0.22 tolerated(0.27) benign(0.14) TCGA-FW-A3R5-06 3 52283280 52283280 G A PPM1M Missense_Mutation p.E181K 0.18 tolerated(0.32) benign(0.148) TCGA-FW-A3R5-06 3 5229451 5229451 C T AC026202.1 Missense_Mutation p.G178S 0.40 probably_damaging(0.934) TCGA-FW-A3R5-06 3 52356446 52356446 C T DNAH1 5'UTR 0.46 TCGA-FW-A3R5-06 3 52356612 52356612 C T DNAH1 Missense_Mutation p.P52S 0.23 benign(0.003) TCGA-FW-A3R5-06 3 52382951 52382951 C T DNAH1 Silent p.S718S 0.27 TCGA-FW-A3R5-06 3 52395327 52395327 C T DNAH1 Silent p.L1611L 0.25 TCGA-FW-A3R5-06 3 52400880 52400880 G A DNAH1 Silent p.E1914E 0.27 TCGA-FW-A3R5-06 3 52420785 52420785 C T DNAH1 Silent p.T2973T 0.40 TCGA-FW-A3R5-06 3 52425320 52425320 C T DNAH1 Silent p.A3289A 0.27 TCGA-FW-A3R5-06 3 52439273 52439273 G A BAP1 Silent p.A323A 0.31 TCGA-FW-A3R5-06 3 52441424 52441424 C T BAP1 Missense_Mutation p.S143N 0.26 tolerated(0.05) possibly_damaging(0.762) TCGA-FW-A3R5-06 3 52454938 52454938 C T PHF7 Missense_Mutation p.R145C 0.28 deleterious(0.03) benign(0.051) TCGA-FW-A3R5-06 3 52457136 52457136 C T PHF7 Missense_Mutation p.P317S 0.30 tolerated(0.08) benign(0.011) TCGA-FW-A3R5-06 3 52472065 52472065 G A SEMA3G Missense_Mutation p.L554F 0.22 tolerated(0.68) possibly_damaging(0.567) TCGA-FW-A3R5-06 3 52472066 52472066 G A SEMA3G Silent p.S553S 0.22 TCGA-FW-A3R5-06 3 52472087 52472087 G A SEMA3G Silent p.S546S 0.26 TCGA-FW-A3R5-06 3 52476875 52476875 G A SEMA3G Missense_Mutation p.S55F 0.36 tolerated(0.8) benign(0.005) TCGA-FW-A3R5-06 3 52485216 52485216 C T TNNC1 3'UTR 0.16 TCGA-FW-A3R5-06 3 52514231 52514231 C T NISCH Missense_Mutation p.P483L 0.21 deleterious(0.02) benign(0.017) TCGA-FW-A3R5-06 3 52514365 52514365 C T NISCH Intron 0.59 TCGA-FW-A3R5-06 3 52522226 52522226 C T NISCH Silent p.I906I 0.22 TCGA-FW-A3R5-06 3 52522557 52522557 C T NISCH Missense_Mutation p.P1017S 0.34 tolerated(0.8) benign(0.001) TCGA-FW-A3R5-06 3 52536041 52536041 G A STAB1 Silent p.E117E 0.25 TCGA-FW-A3R5-06 3 52539771 52539771 G A STAB1 Missense_Mutation p.G557S 0.22 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 3 52540748 52540748 G A STAB1 Missense_Mutation p.R624K 0.24 tolerated(0.7) benign(0.013) TCGA-FW-A3R5-06 3 52540749 52540749 G A STAB1 Silent p.R624R 0.24 TCGA-FW-A3R5-06 3 52547965 52547965 C T STAB1 Missense_Mutation p.P1139S 0.30 tolerated(0.34) possibly_damaging(0.679) TCGA-FW-A3R5-06 3 52548200 52548200 C T STAB1 Silent p.L1173L 0.20 TCGA-FW-A3R5-06 3 52554257 52554257 G A STAB1 Missense_Mutation p.R1817Q 0.06 deleterious(0.03) possibly_damaging(0.81) TCGA-FW-A3R5-06 3 52554926 52554926 G A STAB1 Missense_Mutation p.R1938K 0.18 tolerated(0.12) benign(0.028) TCGA-FW-A3R5-06 3 52563345 52563345 G A NT5DC2 Silent p.L80L 0.15 TCGA-FW-A3R5-06 3 52812419 52812419 C T ITIH1 Missense_Mutation p.H68Y 0.32 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 3 52813459 52813459 G A ITIH1 Missense_Mutation p.R141K 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 3 52818464 52818464 G A ITIH1 Missense_Mutation p.E460K 0.30 deleterious(0.01) probably_damaging(0.945) TCGA-FW-A3R5-06 3 52822006 52822006 C T ITIH1 Silent p.F643F 0.26 TCGA-FW-A3R5-06 3 52830625 52830625 G A ITIH3 Silent p.V81V 0.29 TCGA-FW-A3R5-06 3 52842628 52842628 C T ITIH3 Silent p.F868F 0.22 TCGA-FW-A3R5-06 3 52852284 52852284 G A ITIH4 Missense_Mutation p.T723I 0.14 tolerated(0.14) benign(0.002) TCGA-FW-A3R5-06 3 52853451 52853451 G A ITIH4 Missense_Mutation p.P679S 0.24 tolerated(0.22) benign(0.004) TCGA-FW-A3R5-06 3 52858009 52858009 G A ITIH4 Missense_Mutation p.P395S 0.24 tolerated(0.05) possibly_damaging(0.864) TCGA-FW-A3R5-06 3 53157753 53157753 G A RFT1 Silent p.L85L 0.30 TCGA-FW-A3R5-06 3 53157793 53157793 G A RFT1 Silent p.L71L 0.28 TCGA-FW-A3R5-06 3 53220037 53220037 C T PRKCD Silent p.F360F 0.23 TCGA-FW-A3R5-06 3 53222763 53222763 G A PRKCD Silent p.L481L 0.41 TCGA-FW-A3R5-06 3 53263106 53263106 G A TKT Missense_Mutation p.R446W 0.29 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 3 53694250 53694250 C T CACNA1D Silent p.A238A 0.24 TCGA-FW-A3R5-06 3 53694273 53694273 G A CACNA1D Missense_Mutation p.R246Q 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 3 53766094 53766094 C T CACNA1D Missense_Mutation p.P840S 0.09 tolerated(0.9) benign(0.011) TCGA-FW-A3R5-06 3 53814059 53814059 G A CACNA1D Missense_Mutation p.V1552I 0.17 tolerated(0.05) probably_damaging(0.991) TCGA-FW-A3R5-06 3 53839063 53839063 G A CACNA1D Missense_Mutation p.R1900K 0.17 tolerated_low_confidence(0.48) benign(0.033) TCGA-FW-A3R5-06 3 53839141 53839141 C T CACNA1D Missense_Mutation p.P1926L 0.33 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-FW-A3R5-06 3 53844098 53844098 C T CACNA1D Missense_Mutation p.P2009S 0.15 tolerated_low_confidence(0.96) benign(0.011) TCGA-FW-A3R5-06 3 53854576 53854576 G A CHDH Missense_Mutation p.P349S 0.31 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 3 53857356 53857356 C T CHDH Nonsense_Mutation p.W227* 0.46 TCGA-FW-A3R5-06 3 53911378 53911378 G A ACTR8 Missense_Mutation p.H183Y 0.27 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 3 53912393 53912393 G A ACTR8 Silent p.S132S 0.17 TCGA-FW-A3R5-06 3 54420801 54420801 G A CACNA2D3 Silent p.Q127Q 0.25 TCGA-FW-A3R5-06 3 54603833 54603833 G A CACNA2D3 Missense_Mutation p.E230K 0.26 tolerated(0.44) benign(0.003) TCGA-FW-A3R5-06 3 54604068 54604068 G A CACNA2D3 Silent p.A275A 0.32 TCGA-FW-A3R5-06 3 54604082 54604082 C T CACNA2D3 Missense_Mutation p.S280L 0.31 deleterious(0.02) possibly_damaging(0.519) TCGA-FW-A3R5-06 3 54661819 54661819 C T CACNA2D3 Silent p.F323F 0.33 TCGA-FW-A3R5-06 3 54798330 54798330 C T CACNA2D3 Silent p.I444I 0.31 TCGA-FW-A3R5-06 3 54798336 54798336 G A CACNA2D3 Silent p.Q446Q 0.34 TCGA-FW-A3R5-06 3 54914862 54914862 C T CACNA2D3 Silent p.F628F 0.27 TCGA-FW-A3R5-06 3 54919601 54919601 C T CACNA2D3 Missense_Mutation p.P682S 0.40 deleterious(0.03) benign(0.122) TCGA-FW-A3R5-06 3 54922002 54922002 C T CACNA2D3 Silent p.I691I 0.39 TCGA-FW-A3R5-06 3 54928653 54928653 G A CACNA2D3 Intron 0.21 TCGA-FW-A3R5-06 3 54952570 54952570 G A LRTM1 Silent p.A318A 0.34 TCGA-FW-A3R5-06 3 54952815 54952815 G A LRTM1 Missense_Mutation p.P237S 0.36 tolerated(0.42) benign(0.008) TCGA-FW-A3R5-06 3 54952916 54952916 C T LRTM1 Missense_Mutation p.G203E 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 54958874 54958874 C T LRTM1 Missense_Mutation p.E126K 0.25 tolerated(0.18) benign(0.023) TCGA-FW-A3R5-06 3 54958995 54958995 G A LRTM1 Silent p.S85S 0.30 TCGA-FW-A3R5-06 3 54959101 54959101 G A LRTM1 Missense_Mutation p.P50L 0.14 tolerated(0.06) possibly_damaging(0.762) TCGA-FW-A3R5-06 3 54959231 54959231 G A LRTM1 Silent p.L7L 0.22 TCGA-FW-A3R5-06 3 54962074 54962074 C T LRTM1 5'UTR 0.45 TCGA-FW-A3R5-06 3 55002508 55002508 C T CACNA2D3 Silent p.F827F 0.21 TCGA-FW-A3R5-06 3 55003839 55003839 G A CACNA2D3 Missense_Mutation p.D842N 0.42 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 3 55107474 55107474 C T CACNA2D3 Missense_Mutation p.S997F 0.26 tolerated(0.31) possibly_damaging(0.828) TCGA-FW-A3R5-06 3 55108270 55108270 C T CACNA2D3 3'UTR 0.30 TCGA-FW-A3R5-06 3 55504230 55504230 C T WNT5A Missense_Mutation p.D345N 0.23 tolerated(0.51) benign(0.079) TCGA-FW-A3R5-06 3 55504313 55504313 G A WNT5A Missense_Mutation p.S317L 0.28 deleterious(0) probably_damaging(0.97) TCGA-FW-A3R5-06 3 56183149 56183149 G A ERC2 Silent p.I387I 0.15 TCGA-FW-A3R5-06 3 56468411 56468411 C T ERC2 Missense_Mutation p.E209K 0.32 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 3 56468689 56468689 G A ERC2 Missense_Mutation p.S116L 0.28 deleterious(0.04) benign(0.101) TCGA-FW-A3R5-06 3 56468954 56468954 C T ERC2 Missense_Mutation p.G28S 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 3 56468962 56468962 G A ERC2 Missense_Mutation p.P25L 0.27 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 3 56681165 56681165 A G FAM208A Missense_Mutation p.S534P 0.22 deleterious(0) benign(0.207) TCGA-FW-A3R5-06 3 57132039 57132039 G A IL17RD Silent p.F564F 0.18 TCGA-FW-A3R5-06 3 57272128 57272128 C T APPL1 Missense_Mutation p.S90L 0.29 deleterious(0) possibly_damaging(0.717) TCGA-FW-A3R5-06 3 57312513 57312513 C T ASB14 Silent p.L441L 0.25 TCGA-FW-A3R5-06 3 57494895 57494895 C T DNAH12 Missense_Mutation p.E172K 0.22 deleterious(0.02) benign(0.02) TCGA-FW-A3R5-06 3 57620487 57620487 G A DENND6A Missense_Mutation p.P381L 0.22 deleterious(0.03) benign(0.067) TCGA-FW-A3R5-06 3 57631445 57631445 G A DENND6A Missense_Mutation p.P327L 0.07 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 58067416 58067416 C T FLNB Silent p.L234L 0.08 TCGA-FW-A3R5-06 3 58084602 58084602 C T FLNB Missense_Mutation p.P438S 0.22 tolerated(0.08) probably_damaging(1) TCGA-FW-A3R5-06 3 58107029 58107029 G A FLNB Silent p.G975G 0.29 TCGA-FW-A3R5-06 3 58111348 58111348 C T FLNB Silent p.I1313I 0.31 TCGA-FW-A3R5-06 3 58111395 58111395 C T FLNB Missense_Mutation p.S1329F 0.24 deleterious(0) possibly_damaging(0.825) TCGA-FW-A3R5-06 3 58118620 58118620 G A FLNB Missense_Mutation p.M1523I 0.33 tolerated(0.09) benign(0.001) TCGA-FW-A3R5-06 3 58118625 58118625 C T FLNB Missense_Mutation p.S1525L 0.34 tolerated(0.05) benign(0.012) TCGA-FW-A3R5-06 3 58134543 58134543 G A FLNB Missense_Mutation p.E2050K 0.27 tolerated(0.09) benign(0.368) TCGA-FW-A3R5-06 3 58149057 58149057 G A FLNB Missense_Mutation p.G2431S 0.34 deleterious(0.01) probably_damaging(0.96) TCGA-FW-A3R5-06 3 58155415 58155415 C T FLNB Missense_Mutation p.P2537S 0.32 deleterious(0.04) probably_damaging(0.982) TCGA-FW-A3R5-06 3 58155425 58155425 C T FLNB Missense_Mutation p.S2540F 0.31 deleterious(0.04) possibly_damaging(0.797) TCGA-FW-A3R5-06 3 58178546 58178546 G A DNASE1L3 Intron 0.17 TCGA-FW-A3R5-06 3 58271159 58271159 C T ABHD6 Silent p.I272I 0.25 TCGA-FW-A3R5-06 3 58296101 58296101 C T RPP14 Silent p.N15N 0.25 TCGA-FW-A3R5-06 3 58368345 58368345 G A PXK Silent p.V102V 0.31 TCGA-FW-A3R5-06 3 58382778 58382778 C T PXK Missense_Mutation p.L279F 0.29 deleterious(0) probably_damaging(0.913) TCGA-FW-A3R5-06 3 58484457 58484457 C T KCTD6 5'UTR 0.28 TCGA-FW-A3R5-06 3 58512243 58512243 G A ACOX2 Silent p.A432A 0.42 TCGA-FW-A3R5-06 3 58512360 58512360 C T ACOX2 Missense_Mutation p.M393I 0.11 tolerated(0.14) benign(0.001) TCGA-FW-A3R5-06 3 58520251 58520251 T A ACOX2 Splice_Site p.X54_splice 0.31 TCGA-FW-A3R5-06 3 58552332 58552332 C T FAM107A Missense_Mutation p.E140K 0.09 tolerated(0.09) benign(0) TCGA-FW-A3R5-06 3 58620087 58620087 C T FAM3D Silent p.K198K 0.29 TCGA-FW-A3R5-06 3 58639429 58639429 C T FAM3D Missense_Mutation p.M31I 0.28 tolerated(0.5) benign(0.005) TCGA-FW-A3R5-06 3 58639509 58639509 C T FAM3D Splice_Site p.X5_splice 0.10 TCGA-FW-A3R5-06 3 58849567 58849567 C T C3orf67 Missense_Mutation p.S312N 0.21 tolerated(0.08) benign(0.029) TCGA-FW-A3R5-06 3 58855057 58855057 G A C3orf67 Missense_Mutation p.H213Y 0.19 tolerated(0.52) benign(0.382) TCGA-FW-A3R5-06 3 59737931 59737931 G A FHIT 3'UTR 0.39 TCGA-FW-A3R5-06 3 62189529 62189529 G A PTPRG Missense_Mutation p.G687E 0.27 tolerated(0.17) benign(0.001) TCGA-FW-A3R5-06 3 62253103 62253103 A G PTPRG Missense_Mutation p.K892R 0.27 tolerated(0.13) benign(0.397) TCGA-FW-A3R5-06 3 62358297 62358297 C T FEZF2 Missense_Mutation p.V83M 0.26 tolerated(0.18) benign(0.001) TCGA-FW-A3R5-06 3 62423883 62423883 G A CADPS Missense_Mutation p.P1225S 0.28 tolerated(0.18) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 62452064 62452064 C T CADPS Missense_Mutation p.E1168K 0.34 tolerated(0.27) benign(0.305) TCGA-FW-A3R5-06 3 62543093 62543093 G A CADPS Silent p.T580T 0.17 TCGA-FW-A3R5-06 3 63967960 63967960 C T ATXN7 Missense_Mutation p.S284F 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 3 63981490 63981490 C T ATXN7 Silent p.S664S 0.34 TCGA-FW-A3R5-06 3 64084892 64084892 G A PRICKLE2 Silent p.F790F 0.25 TCGA-FW-A3R5-06 3 64526872 64526872 C T ADAMTS9 Missense_Mutation p.G1807E 0.29 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 64527202 64527202 C T ADAMTS9 Silent p.K1764K 0.23 TCGA-FW-A3R5-06 3 64527218 64527218 C T ADAMTS9 Missense_Mutation p.R1759K 0.33 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 3 64589979 64589979 G A ADAMTS9 Missense_Mutation p.P1168L 0.34 tolerated(0.76) benign(0.003) TCGA-FW-A3R5-06 3 64606904 64606904 C T ADAMTS9 Missense_Mutation p.R900Q 0.32 deleterious(0.01) benign(0.298) TCGA-FW-A3R5-06 3 64633642 64633642 C T ADAMTS9 Missense_Mutation p.D562N 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 3 64640081 64640081 C T ADAMTS9 Missense_Mutation p.E422K 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 65346757 65346757 G A MAGI1 Intron 0.28 TCGA-FW-A3R5-06 3 65425637 65425637 C T MAGI1 Missense_Mutation p.R396Q 0.35 deleterious(0.03) possibly_damaging(0.681) TCGA-FW-A3R5-06 3 65456139 65456139 C T MAGI1 Missense_Mutation p.E260K 0.14 tolerated(0.08) possibly_damaging(0.465) TCGA-FW-A3R5-06 3 65464345 65464345 C T MAGI1 Missense_Mutation p.D227N 0.19 tolerated(0.57) possibly_damaging(0.882) TCGA-FW-A3R5-06 3 66433743 66433743 C T LRIG1 Silent p.G718G 0.24 TCGA-FW-A3R5-06 3 67053666 67053666 G A KBTBD8 Missense_Mutation p.R92Q 0.31 tolerated(0.37) possibly_damaging(0.898) TCGA-FW-A3R5-06 3 67053896 67053896 G A KBTBD8 Missense_Mutation p.D169N 0.20 tolerated(0.35) benign(0.139) TCGA-FW-A3R5-06 3 67058534 67058534 C T KBTBD8 Missense_Mutation p.R511C 0.25 tolerated(0.1) benign(0.013) TCGA-FW-A3R5-06 3 67570915 67570915 G A SUCLG2 Silent p.L187L 0.32 TCGA-FW-A3R5-06 3 68055724 68055724 C T FAM19A1 Intron 0.23 TCGA-FW-A3R5-06 3 68055747 68055747 C T FAM19A1 Intron 0.29 TCGA-FW-A3R5-06 3 68593677 68593677 G A FAM19A1 3'UTR 0.21 TCGA-FW-A3R5-06 3 68802034 68802034 G A FAM19A4 Missense_Mutation p.A89V 0.24 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 3 68929890 68929890 C T FAM19A4 Missense_Mutation p.G41R 0.23 tolerated(0.1) benign(0.008) TCGA-FW-A3R5-06 3 6903240 6903240 C T GRM7 Silent p.F55F 0.25 TCGA-FW-A3R5-06 3 6903304 6903304 C T GRM7 Missense_Mutation p.H77Y 0.16 deleterious(0) possibly_damaging(0.486) TCGA-FW-A3R5-06 3 69111302 69111302 G A UBA3 Missense_Mutation p.S241F 0.29 deleterious(0) possibly_damaging(0.789) TCGA-FW-A3R5-06 3 69151000 69151000 C T ARL6IP5 Missense_Mutation p.P63S 0.20 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 69171531 69171531 C T LMOD3 Missense_Mutation p.E3K 0.34 deleterious_low_confidence(0.04) benign(0.032) TCGA-FW-A3R5-06 3 69220940 69220940 G A FRMD4B 3'UTR 0.36 TCGA-FW-A3R5-06 3 69230763 69230763 G A FRMD4B Missense_Mutation p.S713F 0.25 tolerated(0.67) benign(0.406) TCGA-FW-A3R5-06 3 70014033 70014033 C T MITF Silent p.S399S 0.28 TCGA-FW-A3R5-06 3 71027107 71027107 G A FOXP1 Missense_Mutation p.P409L 0.07 deleterious(0.02) benign(0.269) TCGA-FW-A3R5-06 3 71803815 71803815 C T GPR27 Silent p.L205L 0.20 TCGA-FW-A3R5-06 3 71803825 71803825 C T GPR27 Missense_Mutation p.H209Y 0.46 tolerated(0.34) benign(0.015) TCGA-FW-A3R5-06 3 71804292 71804292 G A GPR27 Silent p.A364A 0.29 TCGA-FW-A3R5-06 3 71821914 71821914 C T PROK2 Silent p.R117R 0.25 TCGA-FW-A3R5-06 3 72842128 72842128 G A SHQ1 Missense_Mutation p.P374S 0.09 tolerated(0.14) possibly_damaging(0.525) TCGA-FW-A3R5-06 3 7340402 7340402 C T GRM7 Silent p.I256I 0.33 TCGA-FW-A3R5-06 3 7340403 7340403 C T GRM7 Missense_Mutation p.P257S 0.33 tolerated(0.14) possibly_damaging(0.492) TCGA-FW-A3R5-06 3 74414831 74414831 G A CNTN3 Silent p.L323L 0.24 TCGA-FW-A3R5-06 3 74548880 74548880 G A CNTN3 Missense_Mutation p.P38S 0.08 tolerated(0.14) benign(0.172) TCGA-FW-A3R5-06 3 7620138 7620138 C T GRM7 Silent p.V515V 0.25 TCGA-FW-A3R5-06 3 7620296 7620296 G A GRM7 Missense_Mutation p.R568K 0.35 tolerated(1) probably_damaging(0.987) TCGA-FW-A3R5-06 3 7620855 7620855 C T GRM7 Silent p.L754L 0.33 TCGA-FW-A3R5-06 3 77607174 77607174 G A ROBO2 Silent p.L453L 0.32 TCGA-FW-A3R5-06 3 77666836 77666836 T G ROBO2 Missense_Mutation p.S1172A 0.12 tolerated(0.15) benign(0.097) TCGA-FW-A3R5-06 3 77671544 77671544 C T ROBO2 Missense_Mutation p.P1257S 0.30 deleterious(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 3 78695312 78695312 G A ROBO1 Silent p.V956V 0.23 TCGA-FW-A3R5-06 3 78717428 78717428 G A ROBO1 Missense_Mutation p.P552L 0.25 tolerated(0.32) probably_damaging(0.997) TCGA-FW-A3R5-06 3 81698074 81698074 G A GBE1 Silent p.S208S 0.32 TCGA-FW-A3R5-06 3 81698078 81698078 G A GBE1 Missense_Mutation p.S207F 0.33 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 3 81699006 81699006 G A GBE1 Missense_Mutation p.R166C 0.22 tolerated(0.06) possibly_damaging(0.816) TCGA-FW-A3R5-06 3 85775660 85775660 C T CADM2 Missense_Mutation p.S10F 0.26 tolerated(0.56) benign(0.034) TCGA-FW-A3R5-06 3 85775681 85775681 C T CADM2 Missense_Mutation p.S17L 0.10 tolerated(0.67) benign(0.001) TCGA-FW-A3R5-06 3 85935348 85935348 G A CADM2 Missense_Mutation p.E127K 0.20 tolerated(0.36) benign(0.012) TCGA-FW-A3R5-06 3 86010709 86010709 C T CADM2 Silent p.F287F 0.28 TCGA-FW-A3R5-06 3 86010787 86010787 C T CADM2 Silent p.L313L 0.21 TCGA-FW-A3R5-06 3 86114835 86114835 C T CADM2 Silent p.L384L 0.15 TCGA-FW-A3R5-06 3 8673774 8673774 C T SSUH2 Missense_Mutation p.E121K 0.27 deleterious(0.01) possibly_damaging(0.588) TCGA-FW-A3R5-06 3 8675490 8675490 G A SSUH2 Intron 0.33 TCGA-FW-A3R5-06 3 8675522 8675522 G A SSUH2 Intron 0.35 TCGA-FW-A3R5-06 3 86996206 86996206 G A VGLL3 Nonsense_Mutation p.Q317* 0.09 TCGA-FW-A3R5-06 3 87018049 87018049 G A VGLL3 Missense_Mutation p.P210S 0.14 tolerated(0.78) benign(0.03) TCGA-FW-A3R5-06 3 87027688 87027688 G A VGLL3 Missense_Mutation p.P131S 0.29 tolerated(0.51) benign(0.032) TCGA-FW-A3R5-06 3 87302653 87302653 C T CHMP2B Missense_Mutation p.S175F 0.10 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 87309043 87309043 C T POU1F1 3'UTR 0.19 TCGA-FW-A3R5-06 3 87325659 87325659 C T POU1F1 5'Flank 0.33 TCGA-FW-A3R5-06 3 8794753 8794753 C T OXTR Silent p.T360T 0.35 TCGA-FW-A3R5-06 3 8794856 8794856 G A OXTR Missense_Mutation p.P326L 0.11 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 3 88039932 88039932 G A HTR1F Silent p.L11L 0.22 TCGA-FW-A3R5-06 3 88041042 88041042 G A HTR1F 3'UTR 0.23 TCGA-FW-A3R5-06 3 88041103 88041103 G A HTR1F 3'UTR 0.53 TCGA-FW-A3R5-06 3 89156913 89156913 C T EPHA3 Silent p.L5L 0.19 TCGA-FW-A3R5-06 3 89259263 89259263 G A EPHA3 Missense_Mutation p.R136Q 0.17 tolerated(0.43) benign(0.011) TCGA-FW-A3R5-06 3 89391132 89391132 C T EPHA3 Silent p.L400L 0.33 TCGA-FW-A3R5-06 3 89448644 89448644 C T EPHA3 Intron 0.28 TCGA-FW-A3R5-06 3 89448669 89448669 G A EPHA3 Intron 0.26 TCGA-FW-A3R5-06 3 89528664 89528664 G A EPHA3 3'UTR 0.21 TCGA-FW-A3R5-06 3 9027420 9027420 C T SRGAP3 Missense_Mutation p.S1028N 0.38 deleterious_low_confidence(0.05) probably_damaging(0.977) TCGA-FW-A3R5-06 3 9034648 9034648 C T SRGAP3 Missense_Mutation p.D834N 0.24 tolerated(0.11) possibly_damaging(0.454) TCGA-FW-A3R5-06 3 9036102 9036102 G A SRGAP3 Missense_Mutation p.S778L 0.27 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 3 9100069 9100069 C T SRGAP3 Missense_Mutation p.E297K 0.30 tolerated(0.09) probably_damaging(0.991) TCGA-FW-A3R5-06 3 9106080 9106080 C T SRGAP3 Silent p.K224K 0.27 TCGA-FW-A3R5-06 3 93615517 93615517 G A PROS1 Missense_Mutation p.P290S 0.18 tolerated(0.19) benign(0.013) TCGA-FW-A3R5-06 3 9483820 9483820 C T SETD5 Missense_Mutation p.P323L 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 9488924 9488924 C T SETD5 Missense_Mutation p.S572L 0.30 tolerated(0.37) benign(0.001) TCGA-FW-A3R5-06 3 9489635 9489635 C T SETD5 Missense_Mutation p.S683L 0.33 tolerated(0.4) benign(0.002) TCGA-FW-A3R5-06 3 9512533 9512533 C T SETD5 Missense_Mutation p.R1039C 0.39 tolerated(0.18) possibly_damaging(0.719) TCGA-FW-A3R5-06 3 95374164 95374164 C T MTHFD2P1 RNA 0.30 TCGA-FW-A3R5-06 3 95374429 95374429 G A MTHFD2P1 RNA 0.20 TCGA-FW-A3R5-06 3 9547825 9547825 C T LHFPL4 Missense_Mutation p.D157N 0.11 tolerated(0.18) benign(0.102) TCGA-FW-A3R5-06 3 96533503 96533503 C T EPHA6 Silent p.S12S 0.24 TCGA-FW-A3R5-06 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 96706530 96706530 G A EPHA6 Silent p.E269E 0.16 TCGA-FW-A3R5-06 3 96962966 96962966 C T EPHA6 Missense_Mutation p.R481C 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 3 97167502 97167502 C T EPHA6 Missense_Mutation p.H608Y 0.11 deleterious(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 3 97185297 97185297 T C EPHA6 Intron 0.12 TCGA-FW-A3R5-06 3 97251363 97251363 C T EPHA6 Missense_Mutation p.R788C 0.22 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 3 9730691 9730691 C T MTMR14 Missense_Mutation p.S453F 0.28 deleterious(0.05) benign(0.424) TCGA-FW-A3R5-06 3 97329689 97329689 C T EPHA6 Silent p.S855S 0.25 TCGA-FW-A3R5-06 3 97367212 97367212 G A EPHA6 Intron 0.31 TCGA-FW-A3R5-06 3 97466366 97466366 C T EPHA6 Silent p.F1076F 0.42 TCGA-FW-A3R5-06 3 97503890 97503890 C T ARL6 Missense_Mutation p.P116S 0.16 tolerated(0.2) benign(0.009) TCGA-FW-A3R5-06 3 9756994 9756994 C T CPNE9 Silent p.F238F 0.19 TCGA-FW-A3R5-06 3 97596782 97596782 C T CRYBG3 Silent p.S300S 0.08 TCGA-FW-A3R5-06 3 97806871 97806871 C T OR5AC2 Silent p.P285P 0.23 TCGA-FW-A3R5-06 3 97851545 97851545 G A OR5H1 Missense_Mutation p.E2K 0.28 tolerated(0.43) benign(0.008) TCGA-FW-A3R5-06 3 97851872 97851872 G A OR5H1 Missense_Mutation p.E111K 0.29 deleterious(0.02) benign(0.167) TCGA-FW-A3R5-06 3 97852271 97852271 C T OR5H1 Missense_Mutation p.H244Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 3 97868352 97868352 G A OR5H14 Silent p.G41G 0.25 TCGA-FW-A3R5-06 3 97887590 97887590 G A OR5H15 Missense_Mutation p.G16E 0.25 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 3 97887664 97887664 G A OR5H15 Missense_Mutation p.G41R 0.26 deleterious(0) possibly_damaging(0.528) TCGA-FW-A3R5-06 3 97887907 97887907 C T OR5H15 Missense_Mutation p.R122C 0.14 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 3 9798279 9798279 C A OGG1 Missense_Mutation p.P291Q 0.26 tolerated(0.17) possibly_damaging(0.75) TCGA-FW-A3R5-06 3 97983180 97983180 G A OR5H6 Missense_Mutation p.E18K 0.31 tolerated(0.41) benign(0.03) TCGA-FW-A3R5-06 3 97983578 97983578 C T OR5H6 Silent p.V150V 0.60 TCGA-FW-A3R5-06 3 97983591 97983591 G A OR5H6 Missense_Mutation p.E155K 0.31 tolerated(0.52) benign(0.003) TCGA-FW-A3R5-06 3 97983855 97983855 G A OR5H6 Missense_Mutation p.E243K 0.32 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 3 9799447 9799447 C T CAMK1 Silent p.A332A 0.25 TCGA-FW-A3R5-06 3 98002441 98002441 G A OR5H2 Missense_Mutation p.R237K 0.26 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 3 9801402 9801402 C T CAMK1 Missense_Mutation p.D260N 0.33 tolerated(0.23) possibly_damaging(0.505) TCGA-FW-A3R5-06 3 9804648 9804648 C T CAMK1 Missense_Mutation p.D127N 0.25 tolerated(0.06) probably_damaging(0.968) TCGA-FW-A3R5-06 3 98072952 98072952 C T OR5K4 Silent p.F85F 0.30 TCGA-FW-A3R5-06 3 98109721 98109721 C T OR5K3 Missense_Mutation p.S71F 0.27 deleterious(0.02) benign(0.052) TCGA-FW-A3R5-06 3 98110023 98110023 C T OR5K3 Missense_Mutation p.H172Y 0.27 deleterious(0.01) benign(0.111) TCGA-FW-A3R5-06 3 98110041 98110041 T A OR5K3 Missense_Mutation p.F178I 0.25 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 3 98189039 98189039 C T OR5K1 Nonsense_Mutation p.Q207* 0.26 TCGA-FW-A3R5-06 3 98189116 98189116 G A OR5K1 Silent p.E232E 0.30 TCGA-FW-A3R5-06 3 98189325 98189325 G A OR5K1 Missense_Mutation p.R302K 0.22 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 3 98251249 98251249 C T GPR15 Silent p.L124L 0.12 TCGA-FW-A3R5-06 3 98299547 98299547 G A CPOX Missense_Mutation p.P449S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 3 98312019 98312019 G A CPOX Silent p.A110A 0.33 TCGA-FW-A3R5-06 3 98312041 98312041 G A CPOX Missense_Mutation p.P103L 0.29 deleterious(0.01) benign(0.036) TCGA-FW-A3R5-06 3 9882454 9882454 G A RPUSD3 Missense_Mutation p.P148L 0.18 deleterious(0.02) possibly_damaging(0.809) TCGA-FW-A3R5-06 3 9944701 9944701 C T IL17RE Missense_Mutation p.R29C 0.31 deleterious_low_confidence(0.01) benign(0.17) TCGA-FW-A3R5-06 3 99509613 99509613 C T COL8A1 Silent p.A29A 0.38 TCGA-FW-A3R5-06 3 99513335 99513335 G A COL8A1 Missense_Mutation p.G197E 0.27 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 99513509 99513509 G A COL8A1 Missense_Mutation p.G255E 0.36 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 99513605 99513605 G A COL8A1 Missense_Mutation p.G287E 0.21 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 99513660 99513660 G A COL8A1 Silent p.G305G 0.34 TCGA-FW-A3R5-06 3 99514193 99514193 G A COL8A1 Missense_Mutation p.G483E 0.31 deleterious(0) unknown(0) TCGA-FW-A3R5-06 3 99514879 99514879 G A COL8A1 Missense_Mutation p.D712N 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 3 99515003 99515003 G A COL8A1 3'UTR 0.22 TCGA-FW-A3R5-06 3 99568383 99568383 C T FILIP1L Missense_Mutation p.G713R 0.07 tolerated(1) benign(0.14) TCGA-FW-A3R5-06 3 9959119 9959119 C T IL17RC Silent p.P40P 0.23 TCGA-FW-A3R5-06 4 100126096 100126096 C T ADH6 Missense_Mutation p.M363I 0.33 deleterious(0.02) benign(0.255) TCGA-FW-A3R5-06 4 100130033 100130033 G A ADH6 Missense_Mutation p.S207F 0.12 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 4 100131569 100131569 T C ADH6 Intron 0.31 TCGA-FW-A3R5-06 4 100131594 100131594 C T ADH6 Missense_Mutation p.G110S 0.26 tolerated(0.47) benign(0.193) TCGA-FW-A3R5-06 4 100134904 100134904 C T ADH6 Missense_Mutation p.V41I 0.33 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 4 100205629 100205629 G A ADH1A Missense_Mutation p.S165L 0.26 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 4 100239939 100239939 C T ADH1B Intron 0.32 TCGA-FW-A3R5-06 4 100261751 100261751 C T ADH1C Nonsense_Mutation p.W315* 0.25 TCGA-FW-A3R5-06 4 100266060 100266060 C T ADH1C Missense_Mutation p.G176R 0.27 probably_damaging(1) TCGA-FW-A3R5-06 4 100268916 100268916 C T ADH1C Missense_Mutation p.E36K 0.25 probably_damaging(1) TCGA-FW-A3R5-06 4 100348964 100348964 G A ADH7 Missense_Mutation p.S197F 0.29 deleterious(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 4 100348997 100348997 G A ADH7 Missense_Mutation p.P186L 0.20 tolerated(1) benign(0.034) TCGA-FW-A3R5-06 4 100443816 100443816 G A C4orf17 Missense_Mutation p.G96E 0.22 tolerated(0.14) benign(0.178) TCGA-FW-A3R5-06 4 100463110 100463110 G A C4orf17 Missense_Mutation p.M308I 0.30 tolerated(0.09) benign(0.104) TCGA-FW-A3R5-06 4 100472066 100472066 G A TRMT10A Nonsense_Mutation p.R243* 0.28 TCGA-FW-A3R5-06 4 100504621 100504621 G A MTTP Missense_Mutation p.E114K 0.27 tolerated(0.14) benign(0.016) TCGA-FW-A3R5-06 4 100504670 100504670 G A MTTP Missense_Mutation p.G130E 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 4 100510857 100510857 G A MTTP Missense_Mutation p.G151S 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 4 100530112 100530112 C T MTTP Silent p.L583L 0.21 TCGA-FW-A3R5-06 4 100532314 100532314 G A MTTP Missense_Mutation p.R595Q 0.12 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 4 100738117 100738117 C T DAPP1 Missense_Mutation p.P16L 0.24 tolerated_low_confidence(0.12) benign(0.006) TCGA-FW-A3R5-06 4 10079019 10079019 G A WDR1 Silent p.S541S 0.20 TCGA-FW-A3R5-06 4 10084736 10084736 G A WDR1 Missense_Mutation p.S369F 0.31 deleterious(0.04) possibly_damaging(0.817) TCGA-FW-A3R5-06 4 101396232 101396232 C T EMCN Silent p.L74L 0.11 TCGA-FW-A3R5-06 4 101439167 101439167 G A EMCN 5'UTR 0.33 TCGA-FW-A3R5-06 4 1018323 1018323 C T FGFRL1 Missense_Mutation p.P315S 0.20 tolerated(0.06) probably_damaging(0.971) TCGA-FW-A3R5-06 4 1018324 1018324 C T FGFRL1 Missense_Mutation p.P315L 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 102791757 102791757 G A BANK1 Missense_Mutation p.E287K 0.33 tolerated(0.11) benign(0.003) TCGA-FW-A3R5-06 4 102951139 102951139 G A BANK1 Missense_Mutation p.M539I 0.28 tolerated(0.17) benign(0.121) TCGA-FW-A3R5-06 4 102965001 102965001 C T BANK1 Nonsense_Mutation p.Q636* 0.33 TCGA-FW-A3R5-06 4 103188658 103188658 G A SLC39A8 Silent p.L408L 0.18 TCGA-FW-A3R5-06 4 103592516 103592516 C T MANBA Missense_Mutation p.M384I 0.36 tolerated(0.13) possibly_damaging(0.874) TCGA-FW-A3R5-06 4 103730987 103730987 G A UBE2D3 Missense_Mutation p.P19L 0.30 deleterious_low_confidence(0.01) benign(0.303) TCGA-FW-A3R5-06 4 104044065 104044065 G A CENPE Missense_Mutation p.P2369L 0.20 benign(0.003) TCGA-FW-A3R5-06 4 104057386 104057386 G T CENPE Missense_Mutation p.P2145H 0.29 probably_damaging(0.917) TCGA-FW-A3R5-06 4 104061975 104061975 G A CENPE Missense_Mutation p.A1917V 0.37 benign(0.052) TCGA-FW-A3R5-06 4 104062929 104062929 G A CENPE Missense_Mutation p.S1814L 0.08 probably_damaging(0.948) TCGA-FW-A3R5-06 4 104081828 104081828 G A CENPE Missense_Mutation p.S747L 0.12 probably_damaging(0.987) TCGA-FW-A3R5-06 4 10446015 10446015 G A ZNF518B Silent p.V646V 0.25 TCGA-FW-A3R5-06 4 10446685 10446685 G A ZNF518B Missense_Mutation p.P423L 0.29 deleterious(0.01) benign(0.01) TCGA-FW-A3R5-06 4 10447742 10447742 G A ZNF518B Missense_Mutation p.L71F 0.25 tolerated(0.14) possibly_damaging(0.548) TCGA-FW-A3R5-06 4 104510830 104510830 G A TACR3 3'UTR 0.35 TCGA-FW-A3R5-06 4 104510873 104510873 C T TACR3 Missense_Mutation p.S455N 0.27 tolerated(0.08) benign(0.002) TCGA-FW-A3R5-06 4 104511098 104511098 G A TACR3 Missense_Mutation p.S380F 0.22 deleterious(0) possibly_damaging(0.823) TCGA-FW-A3R5-06 4 104640458 104640458 C T TACR3 Silent p.V125V 0.23 TCGA-FW-A3R5-06 4 104640680 104640680 G A TACR3 Silent p.L51L 0.36 TCGA-FW-A3R5-06 4 104640681 104640681 A T TACR3 Missense_Mutation p.L51H 0.35 deleterious_low_confidence(0.01) benign(0.32) TCGA-FW-A3R5-06 4 10515185 10515185 C T CLNK Missense_Mutation p.R270K 0.27 tolerated(0.11) benign(0.245) TCGA-FW-A3R5-06 4 10599661 10599661 C T CLNK Silent p.K8K 0.37 TCGA-FW-A3R5-06 4 106155373 106155373 G A TET2 Missense_Mutation p.G92R 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 106155412 106155412 G A TET2 Missense_Mutation p.G105R 0.33 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 4 106317465 106317465 G A PPA2 Silent p.S270S 0.27 TCGA-FW-A3R5-06 4 106345444 106345444 G A PPA2 Silent p.I188I 0.29 TCGA-FW-A3R5-06 4 106367581 106367581 G A PPA2 Missense_Mutation p.P134S 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 106534592 106534592 C T ARHGEF38 Nonsense_Mutation p.Q146* 0.07 TCGA-FW-A3R5-06 4 106552254 106552254 G A ARHGEF38 Intron 0.37 TCGA-FW-A3R5-06 4 106621017 106621017 G A INTS12 Missense_Mutation p.P49L 0.11 tolerated(0.12) probably_damaging(0.913) TCGA-FW-A3R5-06 4 10669536 10669536 C T CLNK Splice_Site 0.21 TCGA-FW-A3R5-06 4 107230086 107230086 G A TBCK Missense_Mutation p.A11V 0.34 tolerated(0.28) benign(0.008) TCGA-FW-A3R5-06 4 107845226 107845226 G A DKK2 Missense_Mutation p.S222F 0.25 deleterious(0) benign(0.384) TCGA-FW-A3R5-06 4 107956543 107956543 C T DKK2 Missense_Mutation p.G69D 0.12 tolerated(0.24) benign(0.244) TCGA-FW-A3R5-06 4 107956544 107956544 C T DKK2 Missense_Mutation p.G69S 0.12 tolerated(0.47) benign(0.008) TCGA-FW-A3R5-06 4 108608330 108608330 G A PAPSS1 Missense_Mutation p.R139C 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 109663512 109663512 C T ETNPPL 3'UTR 0.32 TCGA-FW-A3R5-06 4 109663542 109663542 C T ETNPPL 3'UTR 0.26 TCGA-FW-A3R5-06 4 109735039 109735039 T A COL25A1 3'UTR 0.22 TCGA-FW-A3R5-06 4 109762861 109762861 G A COL25A1 Missense_Mutation p.P549L 0.35 deleterious(0) possibly_damaging(0.826) TCGA-FW-A3R5-06 4 109766349 109766349 G A COL25A1 Missense_Mutation p.P525L 0.26 deleterious(0.04) possibly_damaging(0.81) TCGA-FW-A3R5-06 4 109780861 109780861 C T COL25A1 Missense_Mutation p.G424E 0.24 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 4 110222987 110222987 G A COL25A1 Silent p.I63I 0.07 TCGA-FW-A3R5-06 4 110268668 110268668 C A SEC24B-AS1 RNA 0.30 TCGA-FW-A3R5-06 4 110447439 110447439 C T SEC24B Missense_Mutation p.S950F 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 110661950 110661950 C T CFI 3'UTR 0.27 TCGA-FW-A3R5-06 4 110662232 110662232 C T CFI Silent p.G523G 0.30 TCGA-FW-A3R5-06 4 110670406 110670406 G A CFI Silent p.G372G 0.28 TCGA-FW-A3R5-06 4 110681737 110681737 C T CFI Missense_Mutation p.M238I 0.31 tolerated(0.1) benign(0.002) TCGA-FW-A3R5-06 4 110763652 110763652 C T RRH Silent p.L250L 0.22 TCGA-FW-A3R5-06 4 110788861 110788861 C T LRIT3 Silent p.V218V 0.24 TCGA-FW-A3R5-06 4 110791056 110791056 C T LRIT3 Missense_Mutation p.S384L 0.29 tolerated(0.33) benign(0) TCGA-FW-A3R5-06 4 110834437 110834437 C T EGF 5'UTR 0.27 TCGA-FW-A3R5-06 4 110864522 110864522 G A EGF Missense_Mutation p.G147E 0.30 deleterious(0.04) possibly_damaging(0.601) TCGA-FW-A3R5-06 4 110864539 110864539 C T EGF Missense_Mutation p.L153F 0.19 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 4 110882049 110882049 C T EGF Missense_Mutation p.H365Y 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 110901982 110901982 G A EGF Missense_Mutation p.G741E 0.24 deleterious(0.02) possibly_damaging(0.882) TCGA-FW-A3R5-06 4 110972698 110972698 G A ELOVL6 Silent p.I198I 0.33 TCGA-FW-A3R5-06 4 111397480 111397480 G A ENPEP 5'UTR 0.24 TCGA-FW-A3R5-06 4 111397710 111397710 G A ENPEP Missense_Mutation p.G47E 0.27 tolerated(1) benign(0) TCGA-FW-A3R5-06 4 111397755 111397755 C T ENPEP Missense_Mutation p.S62F 0.16 deleterious(0.04) benign(0.143) TCGA-FW-A3R5-06 4 111398053 111398053 C T ENPEP Silent p.F161F 0.28 TCGA-FW-A3R5-06 4 111398054 111398054 G A ENPEP Missense_Mutation p.E162K 0.28 tolerated(0.16) benign(0.104) TCGA-FW-A3R5-06 4 111398117 111398117 G A ENPEP Missense_Mutation p.D183N 0.30 tolerated(0.9) benign(0.004) TCGA-FW-A3R5-06 4 111409812 111409812 G A ENPEP Missense_Mutation p.G254R 0.29 tolerated(0.43) benign(0.005) TCGA-FW-A3R5-06 4 111409813 111409813 G A ENPEP Missense_Mutation p.G254E 0.61 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 4 111441412 111441412 C T ENPEP Silent p.T539T 0.28 TCGA-FW-A3R5-06 4 111470544 111470544 G A ENPEP Missense_Mutation p.G732R 0.16 deleterious(0.05) benign(0.098) TCGA-FW-A3R5-06 4 111470890 111470890 G A ENPEP Silent p.R783R 0.15 TCGA-FW-A3R5-06 4 111474509 111474509 C T ENPEP Missense_Mutation p.T847I 0.18 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 4 113298936 113298936 G A ALPK1 Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 4 113348734 113348734 C T ALPK1 Silent p.S236S 0.08 TCGA-FW-A3R5-06 4 113352918 113352918 C T ALPK1 Nonsense_Mutation p.Q739* 0.37 TCGA-FW-A3R5-06 4 113352931 113352931 C T ALPK1 Missense_Mutation p.A743V 0.29 tolerated(0.09) benign(0.001) TCGA-FW-A3R5-06 4 113508735 113508735 G A C4orf21 Missense_Mutation p.P1160S 0.36 tolerated(0.2) benign(0.007) TCGA-FW-A3R5-06 4 113510953 113510953 G A C4orf21 Silent p.F1018F 0.24 TCGA-FW-A3R5-06 4 113527243 113527243 G A C4orf21 Missense_Mutation p.S908F 0.30 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 4 113533736 113533736 G A C4orf21 Missense_Mutation p.P871S 0.13 tolerated(0.18) benign(0.007) TCGA-FW-A3R5-06 4 113538641 113538641 G A C4orf21 Nonsense_Mutation p.Q853* 0.23 TCGA-FW-A3R5-06 4 11400647 11400647 C T HS3ST1 3'UTR 0.22 TCGA-FW-A3R5-06 4 11401213 11401213 G A HS3ST1 Silent p.S139S 0.34 TCGA-FW-A3R5-06 4 114120263 114120263 C T ANK2 Nonsense_Mutation p.Q128* 0.26 TCGA-FW-A3R5-06 4 114153329 114153329 C T ANK2 Missense_Mutation p.P133S 0.22 probably_damaging(1) TCGA-FW-A3R5-06 4 114223968 114223968 G A ANK2 Missense_Mutation p.E841K 0.24 probably_damaging(0.989) TCGA-FW-A3R5-06 4 114267166 114267166 G A ANK2 Silent p.P1453P 0.12 TCGA-FW-A3R5-06 4 114274902 114274902 G A ANK2 Missense_Mutation p.E1710K 0.11 benign(0.122) TCGA-FW-A3R5-06 4 114275491 114275491 C T ANK2 Missense_Mutation p.P1906L 0.24 probably_damaging(0.945) TCGA-FW-A3R5-06 4 114275979 114275979 C T ANK2 Missense_Mutation p.R2069C 0.61 probably_damaging(0.944) TCGA-FW-A3R5-06 4 114276620 114276620 C T ANK2 Silent p.T2282T 0.22 TCGA-FW-A3R5-06 4 114277055 114277055 C T ANK2 Silent p.D2427D 0.33 TCGA-FW-A3R5-06 4 114277282 114277282 C T ANK2 Missense_Mutation p.A2503V 0.17 possibly_damaging(0.792) TCGA-FW-A3R5-06 4 114277283 114277283 C T ANK2 Silent p.A2503A 0.26 TCGA-FW-A3R5-06 4 114277759 114277759 C T ANK2 Missense_Mutation p.S2662F 0.24 probably_damaging(1) TCGA-FW-A3R5-06 4 114277763 114277763 C T ANK2 Silent p.S2663S 0.23 TCGA-FW-A3R5-06 4 114278641 114278641 C T ANK2 Missense_Mutation p.S2956F 0.18 possibly_damaging(0.665) TCGA-FW-A3R5-06 4 114279872 114279872 C T ANK2 Silent p.T3366T 0.09 TCGA-FW-A3R5-06 4 114438809 114438809 G A CAMK2D Silent p.V202V 0.11 TCGA-FW-A3R5-06 4 114823558 114823558 C T ARSJ Missense_Mutation p.E558K 0.30 deleterious(0.05) benign(0.292) TCGA-FW-A3R5-06 4 115544705 115544705 C T UGT8 Silent p.N223N 0.37 TCGA-FW-A3R5-06 4 115544823 115544823 G A UGT8 Missense_Mutation p.G263R 0.30 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 115997368 115997368 C T NDST4 Silent p.L275L 0.26 TCGA-FW-A3R5-06 4 115997406 115997406 G A NDST4 Missense_Mutation p.H263Y 0.22 tolerated(0.57) probably_damaging(0.954) TCGA-FW-A3R5-06 4 115997556 115997556 C T NDST4 Missense_Mutation p.G213S 0.25 tolerated(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 4 115997965 115997965 C T NDST4 Silent p.T76T 0.33 TCGA-FW-A3R5-06 4 118005533 118005533 C T TRAM1L1 Silent p.S339S 0.32 TCGA-FW-A3R5-06 4 119036026 119036026 C T NDST3 Missense_Mutation p.P379S 0.24 tolerated(0.19) possibly_damaging(0.589) TCGA-FW-A3R5-06 4 119064785 119064785 G A NDST3 Silent p.E495E 0.34 TCGA-FW-A3R5-06 4 119256682 119256682 C T PRSS12 Missense_Mutation p.G256S 0.28 tolerated(0.6) benign(0.129) TCGA-FW-A3R5-06 4 119652620 119652620 G A SEC24D Missense_Mutation p.R907C 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 119736782 119736782 G A SEC24D Missense_Mutation p.P166L 0.24 deleterious(0.03) benign(0.391) TCGA-FW-A3R5-06 4 119951748 119951748 C T SYNPO2 Silent p.T606T 0.19 TCGA-FW-A3R5-06 4 119952418 119952418 G A SYNPO2 Missense_Mutation p.G830R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 4 119952828 119952828 G A SYNPO2 Silent p.K966K 0.24 TCGA-FW-A3R5-06 4 119953055 119953055 C T SYNPO2 Missense_Mutation p.S1042L 0.26 tolerated(0.17) benign(0.073) TCGA-FW-A3R5-06 4 119953070 119953070 C T SYNPO2 Missense_Mutation p.S1047F 0.25 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 4 119978560 119978560 G C SYNPO2 Missense_Mutation p.S1086T 0.28 tolerated(0.6) benign(0.006) TCGA-FW-A3R5-06 4 120079232 120079232 C T MYOZ2 Missense_Mutation p.S101L 0.32 tolerated(0.16) benign(0.009) TCGA-FW-A3R5-06 4 120085516 120085516 A T MYOZ2 Missense_Mutation p.K176M 0.24 deleterious(0.01) benign(0.363) TCGA-FW-A3R5-06 4 120192591 120192591 C T USP53 Nonsense_Mutation p.R526* 0.30 TCGA-FW-A3R5-06 4 120240735 120240735 C T FABP2 Missense_Mutation p.E102K 0.29 tolerated(0.73) benign(0.004) TCGA-FW-A3R5-06 4 121631514 121631514 G A PRDM5 Silent p.L560L 0.31 TCGA-FW-A3R5-06 4 121738061 121738061 C T PRDM5 Silent p.A223A 0.20 TCGA-FW-A3R5-06 4 121774626 121774626 G A PRDM5 Missense_Mutation p.R83C 0.08 deleterious(0) probably_damaging(0.912) TCGA-FW-A3R5-06 4 121774677 121774677 C T PRDM5 Missense_Mutation p.E66K 0.18 deleterious(0.02) benign(0.118) TCGA-FW-A3R5-06 4 121774680 121774680 C T PRDM5 Missense_Mutation p.G65R 0.08 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 4 121774681 121774681 C T PRDM5 Silent p.K64K 0.08 TCGA-FW-A3R5-06 4 121957405 121957405 C T NDNF 3'UTR 0.26 TCGA-FW-A3R5-06 4 121957514 121957514 C T NDNF Missense_Mutation p.G538S 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 121957874 121957874 G A NDNF Missense_Mutation p.L418F 0.30 deleterious(0.01) benign(0.138) TCGA-FW-A3R5-06 4 121958050 121958050 C T NDNF Missense_Mutation p.G359E 0.30 tolerated(0.05) possibly_damaging(0.609) TCGA-FW-A3R5-06 4 121958354 121958354 G A NDNF Missense_Mutation p.P258S 0.33 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 4 121958704 121958704 G A NDNF Missense_Mutation p.S141F 0.29 deleterious(0.04) benign(0.389) TCGA-FW-A3R5-06 4 122075732 122075732 C T TNIP3 Missense_Mutation p.E233K 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 122250491 122250491 G A QRFPR Missense_Mutation p.S425F 0.18 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-FW-A3R5-06 4 122250756 122250756 C T QRFPR Missense_Mutation p.E337K 0.22 deleterious(0.04) benign(0.013) TCGA-FW-A3R5-06 4 122681380 122681380 C T TMEM155 3'UTR 0.31 TCGA-FW-A3R5-06 4 122682721 122682721 G A TMEM155 Missense_Mutation p.R62C 0.24 deleterious(0) benign(0.237) TCGA-FW-A3R5-06 4 122776679 122776679 G A BBS7 Missense_Mutation p.P189L 0.32 tolerated(0.21) benign(0.228) TCGA-FW-A3R5-06 4 122833219 122833219 C T TRPC3 Missense_Mutation p.M457I 0.32 tolerated(0.16) benign(0.08) TCGA-FW-A3R5-06 4 122836061 122836061 C T TRPC3 Silent p.T405T 0.29 TCGA-FW-A3R5-06 4 122846208 122846208 G A TRPC3 Missense_Mutation p.R381C 0.17 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 4 122853693 122853693 C T TRPC3 Silent p.A240A 0.19 TCGA-FW-A3R5-06 4 122853810 122853810 C T TRPC3 Silent p.A201A 0.14 TCGA-FW-A3R5-06 4 122854132 122854132 G A TRPC3 Missense_Mutation p.A94V 0.12 deleterious_low_confidence(0.04) benign(0.38) TCGA-FW-A3R5-06 4 122854194 122854194 G A TRPC3 Silent p.S73S 0.09 TCGA-FW-A3R5-06 4 122854245 122854245 C T TRPC3 Intron 0.23 TCGA-FW-A3R5-06 4 123145750 123145750 C T KIAA1109 Missense_Mutation p.P904L 0.29 benign(0.038) TCGA-FW-A3R5-06 4 123193527 123193527 C T KIAA1109 Missense_Mutation p.H2805Y 0.25 probably_damaging(0.985) TCGA-FW-A3R5-06 4 123249380 123249380 C T KIAA1109 Missense_Mutation p.S3706L 0.30 benign(0.009) TCGA-FW-A3R5-06 4 123283252 123283252 C T KIAA1109 Silent p.G4956G 0.15 TCGA-FW-A3R5-06 4 123301256 123301256 C T ADAD1 Missense_Mutation p.S11L 0.28 deleterious(0.01) benign(0.102) TCGA-FW-A3R5-06 4 123301371 123301371 G A ADAD1 Missense_Mutation p.M49I 0.37 tolerated(0.16) benign(0.043) TCGA-FW-A3R5-06 4 123302227 123302227 G A ADAD1 Missense_Mutation p.E85K 0.26 tolerated(0.15) benign(0.222) TCGA-FW-A3R5-06 4 123333775 123333775 G A ADAD1 Missense_Mutation p.E354K 0.08 tolerated(0.1) benign(0.386) TCGA-FW-A3R5-06 4 123374864 123374864 C T IL2 Splice_Site p.X117_splice 0.17 TCGA-FW-A3R5-06 4 123374954 123374954 C T IL2 Missense_Mutation p.E88K 0.25 tolerated(0.31) benign(0) TCGA-FW-A3R5-06 4 123664511 123664511 C T BBS12 Silent p.I488I 0.14 TCGA-FW-A3R5-06 4 123664559 123664559 C T BBS12 Silent p.L504L 0.24 TCGA-FW-A3R5-06 4 124322981 124322981 G A SPRY1 Missense_Mutation p.E79K 0.28 tolerated(0.2) probably_damaging(0.985) TCGA-FW-A3R5-06 4 124323283 124323283 C T SPRY1 Silent p.F179F 0.31 TCGA-FW-A3R5-06 4 125590235 125590235 G A ANKRD50 Silent p.S1399S 0.29 TCGA-FW-A3R5-06 4 126240404 126240404 T A FAT4 Missense_Mutation p.N946K 0.33 benign(0.155) TCGA-FW-A3R5-06 4 126240774 126240774 G A FAT4 Missense_Mutation p.V1070I 0.28 possibly_damaging(0.638) TCGA-FW-A3R5-06 4 126240849 126240849 G A FAT4 Missense_Mutation p.D1095N 0.29 probably_damaging(0.999) TCGA-FW-A3R5-06 4 126241007 126241007 G A FAT4 Silent p.E1147E 0.30 TCGA-FW-A3R5-06 4 126241172 126241172 T G FAT4 Missense_Mutation p.D1202E 0.24 probably_damaging(0.997) TCGA-FW-A3R5-06 4 126241329 126241329 G A FAT4 Missense_Mutation p.E1255K 0.16 probably_damaging(0.977) TCGA-FW-A3R5-06 4 126242399 126242399 G A FAT4 Silent p.R1611R 0.26 TCGA-FW-A3R5-06 4 126315103 126315103 G A FAT4 Intron 0.26 TCGA-FW-A3R5-06 4 126328049 126328049 C T FAT4 Silent p.L1774L 0.22 TCGA-FW-A3R5-06 4 126328089 126328089 C T FAT4 Missense_Mutation p.R1788C 0.36 probably_damaging(0.932) TCGA-FW-A3R5-06 4 126328133 126328133 G A FAT4 Silent p.L1802L 0.29 TCGA-FW-A3R5-06 4 126370219 126370219 C T FAT4 Missense_Mutation p.S2683F 0.29 possibly_damaging(0.898) TCGA-FW-A3R5-06 4 126370417 126370417 G A FAT4 Missense_Mutation p.G2749E 0.31 probably_damaging(1) TCGA-FW-A3R5-06 4 126371800 126371800 G A FAT4 Missense_Mutation p.G3210E 0.31 probably_damaging(1) TCGA-FW-A3R5-06 4 126372173 126372173 C T FAT4 Silent p.H3334H 0.17 TCGA-FW-A3R5-06 4 126372580 126372580 G A FAT4 Missense_Mutation p.R3470Q 0.29 probably_damaging(0.999) TCGA-FW-A3R5-06 4 126372625 126372625 C T FAT4 Missense_Mutation p.S3485L 0.28 benign(0.012) TCGA-FW-A3R5-06 4 126373317 126373317 C T FAT4 Missense_Mutation p.R3716C 0.08 benign(0.01) TCGA-FW-A3R5-06 4 126373565 126373565 G A FAT4 Silent p.V3798V 0.16 TCGA-FW-A3R5-06 4 126398344 126398344 G A FAT4 Missense_Mutation p.G4110R 0.31 probably_damaging(1) TCGA-FW-A3R5-06 4 126398443 126398443 C T FAT4 Missense_Mutation p.P4143S 0.26 probably_damaging(0.997) TCGA-FW-A3R5-06 4 126400967 126400967 C T FAT4 Missense_Mutation p.S4182L 0.33 benign(0.077) TCGA-FW-A3R5-06 4 126402673 126402673 C T FAT4 Intron 0.27 TCGA-FW-A3R5-06 4 126411082 126411082 A T FAT4 Missense_Mutation p.M4369L 0.28 benign(0.001) TCGA-FW-A3R5-06 4 126411151 126411151 C T FAT4 Missense_Mutation p.P4392S 0.29 benign(0.038) TCGA-FW-A3R5-06 4 126411529 126411529 C T FAT4 Missense_Mutation p.L4518F 0.30 probably_damaging(0.996) TCGA-FW-A3R5-06 4 126412156 126412156 G A FAT4 Missense_Mutation p.D4727N 0.27 benign(0.22) TCGA-FW-A3R5-06 4 128564722 128564722 C T INTU Silent p.L65L 0.26 TCGA-FW-A3R5-06 4 128595285 128595285 C T INTU Silent p.S366S 0.19 TCGA-FW-A3R5-06 4 128595288 128595288 C T INTU Silent p.L367L 0.18 TCGA-FW-A3R5-06 4 128608858 128608858 C T INTU Missense_Mutation p.P429S 0.23 tolerated(0.53) benign(0.012) TCGA-FW-A3R5-06 4 129873956 129873956 G A SCLT1 Nonsense_Mutation p.R396* 0.26 TCGA-FW-A3R5-06 4 130023817 130023817 C T C4orf33 Missense_Mutation p.P18S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 4 130023819 130023819 C T C4orf33 Silent p.P18P 0.24 TCGA-FW-A3R5-06 4 134072297 134072297 C T PCDH10 Silent p.G334G 0.14 TCGA-FW-A3R5-06 4 134072298 134072298 C T PCDH10 Missense_Mutation p.P335S 0.14 tolerated(0.07) benign(0.07) TCGA-FW-A3R5-06 4 134073281 134073281 C T PCDH10 Silent p.D662D 0.12 TCGA-FW-A3R5-06 4 134111317 134111317 C T PCDH10 3'UTR 0.35 TCGA-FW-A3R5-06 4 138442346 138442346 G A PCDH18 Missense_Mutation p.S1082F 0.31 tolerated(0.05) benign(0.352) TCGA-FW-A3R5-06 4 138451045 138451045 G A PCDH18 Missense_Mutation p.S733F 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-FW-A3R5-06 4 138451179 138451179 C T PCDH18 Missense_Mutation p.M688I 0.28 tolerated(0.19) benign(0.007) TCGA-FW-A3R5-06 4 138451832 138451832 C T PCDH18 Missense_Mutation p.E471K 0.26 tolerated(0.25) probably_damaging(1) TCGA-FW-A3R5-06 4 138451910 138451910 G A PCDH18 Missense_Mutation p.L445F 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 4 138451962 138451962 C T PCDH18 Silent p.K427K 0.28 TCGA-FW-A3R5-06 4 138452406 138452406 C T PCDH18 Silent p.G279G 0.24 TCGA-FW-A3R5-06 4 138452929 138452929 G A PCDH18 Missense_Mutation p.S105F 0.26 tolerated(0.08) possibly_damaging(0.892) TCGA-FW-A3R5-06 4 138453020 138453020 G A PCDH18 Missense_Mutation p.P75S 0.30 tolerated(0.92) benign(0.088) TCGA-FW-A3R5-06 4 138453098 138453098 C T PCDH18 Missense_Mutation p.E49K 0.28 tolerated(0.37) possibly_damaging(0.887) TCGA-FW-A3R5-06 4 138453099 138453099 T C PCDH18 Silent p.S48S 0.28 TCGA-FW-A3R5-06 4 1389325 1389325 C T CRIPAK Silent p.A342A 0.08 TCGA-FW-A3R5-06 4 139163150 139163150 G A SLC7A11 Missense_Mutation p.P25L 0.25 deleterious(0.01) benign(0.093) TCGA-FW-A3R5-06 4 139988877 139988877 G A ELF2 Missense_Mutation p.P180S 0.31 tolerated(0.23) possibly_damaging(0.457) TCGA-FW-A3R5-06 4 140439176 140439176 G A SETD7 Silent p.A261A 0.20 TCGA-FW-A3R5-06 4 140616381 140616381 C T MGST2 Silent p.F63F 0.15 TCGA-FW-A3R5-06 4 141310388 141310388 C T CLGN Missense_Mutation p.R608Q 0.30 tolerated(0.08) benign(0.176) TCGA-FW-A3R5-06 4 141315179 141315179 C T CLGN Missense_Mutation p.R389Q 0.26 tolerated(0.1) benign(0.266) TCGA-FW-A3R5-06 4 141334096 141334096 G A CLGN Missense_Mutation p.S46F 0.29 deleterious(0.04) benign(0.344) TCGA-FW-A3R5-06 4 141484541 141484541 G A UCP1 Missense_Mutation p.R153C 0.35 deleterious(0.01) benign(0.318) TCGA-FW-A3R5-06 4 141543929 141543929 G T TBC1D9 Missense_Mutation p.P1074H 0.23 deleterious(0) possibly_damaging(0.547) TCGA-FW-A3R5-06 4 141583073 141583073 G A TBC1D9 Nonsense_Mutation p.R593* 0.32 TCGA-FW-A3R5-06 4 141598235 141598235 T A TBC1D9 Missense_Mutation p.K291M 0.33 deleterious(0.02) possibly_damaging(0.903) TCGA-FW-A3R5-06 4 141600150 141600150 C T TBC1D9 Missense_Mutation p.R266Q 0.33 tolerated(0.39) benign(0.003) TCGA-FW-A3R5-06 4 141600242 141600242 G A TBC1D9 Silent p.F235F 0.27 TCGA-FW-A3R5-06 4 141888811 141888811 C T RNF150 Missense_Mutation p.R234K 0.31 tolerated(0.26) probably_damaging(0.969) TCGA-FW-A3R5-06 4 141888927 141888927 G A RNF150 Silent p.I195I 0.25 TCGA-FW-A3R5-06 4 144133528 144133528 C T USP38 Missense_Mutation p.P519S 0.19 deleterious(0.04) benign(0.101) TCGA-FW-A3R5-06 4 144359486 144359486 C T GAB1 Missense_Mutation p.P310S 0.27 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 4 144359624 144359624 C T GAB1 Missense_Mutation p.P356S 0.23 tolerated(0.06) possibly_damaging(0.495) TCGA-FW-A3R5-06 4 145038021 145038021 G A GYPA Missense_Mutation p.R115C 0.30 tolerated(0.13) benign(0.02) TCGA-FW-A3R5-06 4 145039905 145039905 C T GYPA Missense_Mutation p.G78E 0.26 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 4 145567885 145567885 G A HHIP Missense_Mutation p.E20K 0.19 deleterious_low_confidence(0.01) benign(0.115) TCGA-FW-A3R5-06 4 145627710 145627710 C T HHIP Missense_Mutation p.L287F 0.38 deleterious(0) benign(0.446) TCGA-FW-A3R5-06 4 145627780 145627780 G A HHIP Nonsense_Mutation p.W310* 0.30 TCGA-FW-A3R5-06 4 145629432 145629432 G A HHIP Missense_Mutation p.V424M 0.17 deleterious(0) possibly_damaging(0.736) TCGA-FW-A3R5-06 4 146029175 146029175 C T ABCE1 Silent p.P66P 0.28 TCGA-FW-A3R5-06 4 146058467 146058467 G A OTUD4 3'UTR 0.21 TCGA-FW-A3R5-06 4 146807044 146807044 G A ZNF827 Silent p.S511S 0.28 TCGA-FW-A3R5-06 4 146807307 146807307 G A ZNF827 Missense_Mutation p.H424Y 0.24 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 4 147227087 147227087 G A SLC10A7 Silent p.I182I 0.24 TCGA-FW-A3R5-06 4 147560232 147560232 G A POU4F2 5'UTR 0.36 TCGA-FW-A3R5-06 4 147560247 147560247 G A POU4F2 5'UTR 0.27 TCGA-FW-A3R5-06 4 147561322 147561322 C T POU4F2 Missense_Mutation p.P198S 0.29 tolerated_low_confidence(0.21) probably_damaging(0.968) TCGA-FW-A3R5-06 4 147795922 147795922 C T TTC29 Missense_Mutation p.E249K 0.18 tolerated(0.08) benign(0.013) TCGA-FW-A3R5-06 4 148463635 148463635 C T EDNRA Silent p.C383C 0.24 TCGA-FW-A3R5-06 4 148463869 148463869 C T EDNRA 3'UTR 0.29 TCGA-FW-A3R5-06 4 148968136 148968136 C T ARHGAP10 Missense_Mutation p.P654L 0.30 tolerated(0.08) benign(0.001) TCGA-FW-A3R5-06 4 149002610 149002610 C T NR3C2 Missense_Mutation p.R947Q 0.32 deleterious(0.02) benign(0.252) TCGA-FW-A3R5-06 4 149073664 149073664 C T NR3C2 Silent p.T822T 0.27 TCGA-FW-A3R5-06 4 149075934 149075934 G A NR3C2 Silent p.I711I 0.31 TCGA-FW-A3R5-06 4 149356757 149356757 G A NR3C2 Missense_Mutation p.S419L 0.17 deleterious_low_confidence(0.01) benign(0.017) TCGA-FW-A3R5-06 4 151153862 151153862 C T DCLK2 Missense_Mutation p.S500L 0.17 deleterious(0.03) benign(0.329) TCGA-FW-A3R5-06 4 151504073 151504073 G A MAB21L2 5'UTR 0.31 TCGA-FW-A3R5-06 4 151509257 151509257 G A LRBA Silent p.S2102S 0.09 TCGA-FW-A3R5-06 4 151729515 151729515 G A LRBA Missense_Mutation p.P1781S 0.34 tolerated(0.06) benign(0.05) TCGA-FW-A3R5-06 4 151773863 151773863 G A LRBA Missense_Mutation p.S1000L 0.21 tolerated_low_confidence(0.3) benign(0.001) TCGA-FW-A3R5-06 4 151835361 151835361 C T LRBA Missense_Mutation p.G383S 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 153564299 153564299 G A TMEM154 Missense_Mutation p.S140F 0.18 deleterious(0) probably_damaging(0.919) TCGA-FW-A3R5-06 4 153691754 153691754 G A TIGD4 Missense_Mutation p.R135C 0.54 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 153791994 153791994 C T ARFIP1 Missense_Mutation p.P98S 0.41 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 4 153864301 153864301 C T FHDC1 Missense_Mutation p.P31L 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-FW-A3R5-06 4 153864657 153864657 C T FHDC1 Missense_Mutation p.P150S 0.25 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 4 153884264 153884264 C T FHDC1 Silent p.L337L 0.33 TCGA-FW-A3R5-06 4 153897363 153897363 C T FHDC1 Missense_Mutation p.P974S 0.31 tolerated(0.4) benign(0.001) TCGA-FW-A3R5-06 4 153897566 153897566 C T FHDC1 Silent p.A1041A 0.26 TCGA-FW-A3R5-06 4 15444301 15444301 T A C1QTNF7 Missense_Mutation p.F257I 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 4 154624199 154624199 C T TLR2 Missense_Mutation p.P47L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 154624622 154624622 G A TLR2 Missense_Mutation p.S188N 0.45 tolerated(0.29) benign(0) TCGA-FW-A3R5-06 4 154625688 154625688 C T TLR2 Silent p.S543S 0.38 TCGA-FW-A3R5-06 4 155156135 155156135 G A DCHS2 Silent p.T2768T 0.31 TCGA-FW-A3R5-06 4 155156512 155156512 C T DCHS2 Missense_Mutation p.E2643K 0.19 deleterious(0.01) possibly_damaging(0.637) TCGA-FW-A3R5-06 4 155156834 155156834 G A DCHS2 Silent p.F2535F 0.30 TCGA-FW-A3R5-06 4 155157067 155157067 C T DCHS2 Missense_Mutation p.G2458R 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 155161724 155161724 C T DCHS2 Missense_Mutation p.D1987N 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 155250772 155250772 C T DCHS2 Missense_Mutation p.R819Q 0.34 tolerated(0.25) benign(0.122) TCGA-FW-A3R5-06 4 155254414 155254414 G A DCHS2 Silent p.T483T 0.31 TCGA-FW-A3R5-06 4 155287468 155287468 G A DCHS2 Silent p.I196I 0.26 TCGA-FW-A3R5-06 4 155287561 155287561 C T DCHS2 Silent p.V165V 0.38 TCGA-FW-A3R5-06 4 155486959 155486959 G A FGB Splice_Site p.X39_splice 0.30 TCGA-FW-A3R5-06 4 155486985 155486985 G A FGB Missense_Mutation p.R47Q 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 155488849 155488849 C T FGB Missense_Mutation p.R199C 0.30 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 4 155491738 155491738 A G FGB Missense_Mutation p.K471R 0.21 tolerated(0.18) benign(0.28) TCGA-FW-A3R5-06 4 155505308 155505308 G A FGA Missense_Mutation p.R857C 0.09 deleterious(0.02) benign(0.255) TCGA-FW-A3R5-06 4 155506871 155506871 G A FGA Silent p.F570F 0.31 TCGA-FW-A3R5-06 4 155506994 155506994 G A FGA Silent p.F529F 0.27 TCGA-FW-A3R5-06 4 155507679 155507679 C T FGA Missense_Mutation p.G301E 0.27 tolerated_low_confidence(0.13) probably_damaging(0.931) TCGA-FW-A3R5-06 4 155507732 155507732 C T FGA Silent p.T283T 0.27 TCGA-FW-A3R5-06 4 155507766 155507766 C T FGA Missense_Mutation p.G272E 0.33 deleterious(0.01) benign(0.041) TCGA-FW-A3R5-06 4 155507941 155507941 G A FGA Missense_Mutation p.P214S 0.31 tolerated(0.12) benign(0.313) TCGA-FW-A3R5-06 4 155508777 155508777 C T FGA Missense_Mutation p.D133N 0.26 tolerated(0.11) possibly_damaging(0.543) TCGA-FW-A3R5-06 4 155528041 155528041 G A FGG Silent p.A315A 0.35 TCGA-FW-A3R5-06 4 155533028 155533028 C T FGG Silent p.L110L 0.21 TCGA-FW-A3R5-06 4 155719196 155719196 G A RBM46 Missense_Mutation p.G129R 0.26 tolerated(0.06) probably_damaging(0.932) TCGA-FW-A3R5-06 4 155719427 155719427 C T RBM46 Missense_Mutation p.P206S 0.19 tolerated(0.07) probably_damaging(0.936) TCGA-FW-A3R5-06 4 155720128 155720128 G A RBM46 Missense_Mutation p.D272N 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 4 155720365 155720365 C T RBM46 Missense_Mutation p.P351S 0.32 tolerated(0.2) benign(0.003) TCGA-FW-A3R5-06 4 156135202 156135202 G A NPY2R Silent p.E37E 0.22 TCGA-FW-A3R5-06 4 156135673 156135673 C T NPY2R Silent p.I194I 0.32 TCGA-FW-A3R5-06 4 156135766 156135766 G A NPY2R Silent p.L225L 0.19 TCGA-FW-A3R5-06 4 156135980 156135980 G A NPY2R Missense_Mutation p.V297I 0.18 tolerated(0.25) benign(0.032) TCGA-FW-A3R5-06 4 156269057 156269057 C T MAP9 Missense_Mutation p.E608K 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-FW-A3R5-06 4 156276982 156276982 C T MAP9 Silent p.S392S 0.13 TCGA-FW-A3R5-06 4 156277015 156277015 C T MAP9 Silent p.L381L 0.29 TCGA-FW-A3R5-06 4 156283289 156283289 G A MAP9 Missense_Mutation p.S238L 0.30 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 4 156289882 156289882 C T MAP9 Missense_Mutation p.M188I 0.10 tolerated(0.23) benign(0) TCGA-FW-A3R5-06 4 156629387 156629387 G A GUCY1A3 Splice_Site p.X106_splice 0.37 TCGA-FW-A3R5-06 4 156631840 156631840 C T GUCY1A3 Missense_Mutation p.H175Y 0.34 tolerated(0.28) possibly_damaging(0.74) TCGA-FW-A3R5-06 4 156631964 156631964 C T GUCY1A3 Missense_Mutation p.P216L 0.32 tolerated(0.4) benign(0.084) TCGA-FW-A3R5-06 4 156634394 156634394 G A GUCY1A3 Missense_Mutation p.D411N 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 4 156634495 156634495 G A GUCY1A3 Silent p.E444E 0.26 TCGA-FW-A3R5-06 4 156638365 156638365 G A GUCY1A3 Missense_Mutation p.D543N 0.16 tolerated(0.39) benign(0.008) TCGA-FW-A3R5-06 4 156651215 156651215 C T GUCY1A3 Silent p.T635T 0.14 TCGA-FW-A3R5-06 4 156651394 156651394 A T GUCY1A3 3'UTR 0.19 TCGA-FW-A3R5-06 4 156725803 156725803 C T GUCY1B3 Missense_Mutation p.P538L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 156757929 156757929 G A ASIC5 Missense_Mutation p.P383S 0.30 tolerated(0.08) possibly_damaging(0.672) TCGA-FW-A3R5-06 4 156838606 156838606 C T TDO2 Missense_Mutation p.S319L 0.20 tolerated(0.05) benign(0.003) TCGA-FW-A3R5-06 4 157689119 157689119 C T PDGFC Missense_Mutation p.E243K 0.31 deleterious(0.01) possibly_damaging(0.891) TCGA-FW-A3R5-06 4 157771398 157771398 C T PDGFC Missense_Mutation p.E97K 0.24 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 4 15780251 15780251 G A CD38 Missense_Mutation p.E72K 0.38 tolerated(0.1) benign(0.022) TCGA-FW-A3R5-06 4 157999191 157999191 G A GLRB Silent p.L5L 0.15 TCGA-FW-A3R5-06 4 158057618 158057618 C T GLRB Intron 0.20 TCGA-FW-A3R5-06 4 158074052 158074052 G A GLRB Missense_Mutation p.E363K 0.22 tolerated(0.38) probably_damaging(0.996) TCGA-FW-A3R5-06 4 158074137 158074137 C T GLRB Missense_Mutation p.T391I 0.32 tolerated(0.23) possibly_damaging(0.898) TCGA-FW-A3R5-06 4 158091891 158091891 C T GLRB 3'UTR 0.27 TCGA-FW-A3R5-06 4 158254056 158254056 G A GRIA2 Missense_Mutation p.R323Q 0.16 deleterious(0.03) possibly_damaging(0.841) TCGA-FW-A3R5-06 4 158257668 158257668 T A GRIA2 Missense_Mutation p.F538Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 15826515 15826515 G A CD38 Nonsense_Mutation p.W125* 0.17 TCGA-FW-A3R5-06 4 15826536 15826536 C T CD38 Silent p.A132A 0.19 TCGA-FW-A3R5-06 4 158284011 158284011 G A GRIA2 Missense_Mutation p.G823S 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 15850277 15850277 C T CD38 3'UTR 0.35 TCGA-FW-A3R5-06 4 159092037 159092037 G C FAM198B Missense_Mutation p.P164R 0.25 tolerated(0.18) benign(0) TCGA-FW-A3R5-06 4 159092246 159092246 C T FAM198B Silent p.E94E 0.28 TCGA-FW-A3R5-06 4 159092555 159092555 G A FAM198B 5'UTR 0.23 TCGA-FW-A3R5-06 4 15937498 15937498 G A FGFBP1 3'UTR 0.41 TCGA-FW-A3R5-06 4 15938219 15938219 G A FGFBP1 Silent p.L13L 0.15 TCGA-FW-A3R5-06 4 159514632 159514632 G A RXFP1 Silent p.E89E 0.09 TCGA-FW-A3R5-06 4 159548022 159548022 C T RXFP1 Missense_Mutation p.S269F 0.19 deleterious(0.02) possibly_damaging(0.854) TCGA-FW-A3R5-06 4 159560422 159560422 G A RXFP1 Missense_Mutation p.G352R 0.28 tolerated(0.24) benign(0.414) TCGA-FW-A3R5-06 4 159836479 159836479 C T C4orf45 Missense_Mutation p.G130E 0.27 deleterious(0.03) probably_damaging(0.918) TCGA-FW-A3R5-06 4 15991445 15991445 G A PROM1 Silent p.P662P 0.27 TCGA-FW-A3R5-06 4 16026826 16026826 C T PROM1 Missense_Mutation p.E207K 0.32 tolerated(0.45) possibly_damaging(0.544) TCGA-FW-A3R5-06 4 160274736 160274736 C T RAPGEF2 Missense_Mutation p.R1236C 0.22 tolerated_low_confidence(0.12) benign(0.016) TCGA-FW-A3R5-06 4 160277257 160277257 C T RAPGEF2 Missense_Mutation p.S1474F 0.31 tolerated_low_confidence(0.14) benign(0.001) TCGA-FW-A3R5-06 4 162307203 162307203 G A FSTL5 Missense_Mutation p.S747F 0.26 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 4 164247039 164247039 G A NPY1R Missense_Mutation p.P223L 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 164247463 164247463 G A NPY1R Missense_Mutation p.L82F 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 164271863 164271863 C T NPY5R Silent p.P146P 0.28 TCGA-FW-A3R5-06 4 164272255 164272255 G A NPY5R Nonsense_Mutation p.W277* 0.25 TCGA-FW-A3R5-06 4 164272587 164272587 C T NPY5R Missense_Mutation p.H388Y 0.29 deleterious(0.01) probably_damaging(0.97) TCGA-FW-A3R5-06 4 164393478 164393478 C T TKTL2 Missense_Mutation p.G470E 0.27 deleterious(0.03) possibly_damaging(0.905) TCGA-FW-A3R5-06 4 164393656 164393656 G A TKTL2 Nonsense_Mutation p.Q411* 0.33 TCGA-FW-A3R5-06 4 164394265 164394265 C T TKTL2 Missense_Mutation p.E208K 0.17 tolerated(0.09) possibly_damaging(0.766) TCGA-FW-A3R5-06 4 164394440 164394440 C T TKTL2 Silent p.R149R 0.20 TCGA-FW-A3R5-06 4 164394441 164394441 C T TKTL2 Missense_Mutation p.R149Q 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 4 164394679 164394679 C T TKTL2 Missense_Mutation p.D70N 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 164506928 164506928 C T MARCH1 Missense_Mutation p.M132I 0.31 tolerated(0.1) probably_damaging(0.989) TCGA-FW-A3R5-06 4 164507045 164507045 G A MARCH1 Silent p.L93L 0.25 TCGA-FW-A3R5-06 4 164507064 164507064 C T MARCH1 Missense_Mutation p.G87E 0.24 tolerated(0.06) probably_damaging(1) TCGA-FW-A3R5-06 4 164507068 164507068 C T MARCH1 Missense_Mutation p.E86K 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 4 164534538 164534538 C T MARCH1 Missense_Mutation p.S57N 0.30 tolerated(0.15) probably_damaging(0.968) TCGA-FW-A3R5-06 4 16504332 16504332 C T LDB2 Nonsense_Mutation p.W352* 0.25 TCGA-FW-A3R5-06 4 165890967 165890967 C T TRIM61 Missense_Mutation p.R63K 0.11 tolerated(0.24) benign(0.012) TCGA-FW-A3R5-06 4 165891019 165891019 C T TRIM61 Missense_Mutation p.D46N 0.19 deleterious(0.04) possibly_damaging(0.811) TCGA-FW-A3R5-06 4 1659150 1659150 G A FAM53A Missense_Mutation p.P41S 0.15 tolerated(0.14) benign(0.019) TCGA-FW-A3R5-06 4 165962195 165962195 G A TRIM60 Missense_Mutation p.R324Q 0.19 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 4 165962425 165962425 C T TRIM60 Missense_Mutation p.P401S 0.36 tolerated(0.14) benign(0.315) TCGA-FW-A3R5-06 4 165962504 165962504 C T TRIM60 Missense_Mutation p.S427F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 166408671 166408671 A C CPE Missense_Mutation p.E352A 0.23 tolerated(0.12) possibly_damaging(0.458) TCGA-FW-A3R5-06 4 166408691 166408691 G A CPE Missense_Mutation p.E359K 0.22 tolerated(0.31) benign(0.027) TCGA-FW-A3R5-06 4 166418738 166418738 G A CPE Missense_Mutation p.M469I 0.29 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 4 166924631 166924631 G A TLL1 Missense_Mutation p.E241K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 166964517 166964517 G A TLL1 Nonsense_Mutation p.W490* 0.29 TCGA-FW-A3R5-06 4 166976277 166976277 G A TLL1 Missense_Mutation p.G525E 0.25 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 4 166976311 166976311 C T TLL1 Silent p.F536F 0.26 TCGA-FW-A3R5-06 4 167012436 167012436 C T TLL1 Missense_Mutation p.R867W 0.31 tolerated(0.06) possibly_damaging(0.832) TCGA-FW-A3R5-06 4 167020477 167020477 C T TLL1 Missense_Mutation p.S902L 0.33 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 4 16760838 16760838 C T LDB2 Missense_Mutation p.E60K 0.28 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 4 168004397 168004397 C T SPOCK3 Missense_Mutation p.E64K 0.31 deleterious(0.05) benign(0.259) TCGA-FW-A3R5-06 4 169049242 169049242 G A ANXA10 Missense_Mutation p.G9E 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 169049298 169049298 G A ANXA10 Missense_Mutation p.G28R 0.08 deleterious(0.04) probably_damaging(0.943) TCGA-FW-A3R5-06 4 169086465 169086465 G A ANXA10 Missense_Mutation p.M156I 0.38 tolerated(0.26) benign(0.012) TCGA-FW-A3R5-06 4 169099050 169099050 G A ANXA10 Missense_Mutation p.E182K 0.16 tolerated(0.22) probably_damaging(0.998) TCGA-FW-A3R5-06 4 169108548 169108548 T G ANXA10 Missense_Mutation p.L313R 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 169146730 169146730 G A DDX60 Missense_Mutation p.S1544F 0.27 deleterious(0) probably_damaging(0.97) TCGA-FW-A3R5-06 4 169183279 169183279 C T DDX60 Missense_Mutation p.E1049K 0.30 tolerated(0.06) benign(0.026) TCGA-FW-A3R5-06 4 169201675 169201675 C T DDX60 Missense_Mutation p.E597K 0.24 tolerated(0.07) benign(0.216) TCGA-FW-A3R5-06 4 169279214 169279214 C T DDX60L 3'UTR 0.27 TCGA-FW-A3R5-06 4 169282328 169282328 C T DDX60L Missense_Mutation p.D1655N 0.19 deleterious(0.03) benign(0.38) TCGA-FW-A3R5-06 4 169337945 169337945 G A DDX60L Missense_Mutation p.H872Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 169340494 169340494 G A DDX60L Nonsense_Mutation p.Q857* 0.38 TCGA-FW-A3R5-06 4 169362547 169362547 G A DDX60L Missense_Mutation p.S412F 0.17 deleterious(0.02) benign(0.181) TCGA-FW-A3R5-06 4 169432679 169432679 G A PALLD Silent p.E8E 0.27 TCGA-FW-A3R5-06 4 169432736 169432736 C T PALLD Silent p.F27F 0.19 TCGA-FW-A3R5-06 4 169432901 169432901 G A PALLD Silent p.K82K 0.17 TCGA-FW-A3R5-06 4 169433294 169433294 C T PALLD Silent p.A213A 0.16 TCGA-FW-A3R5-06 4 169589405 169589405 G A PALLD Missense_Mutation p.D325N 0.26 tolerated(0.08) benign(0.284) TCGA-FW-A3R5-06 4 169589453 169589453 C T PALLD Missense_Mutation p.R341C 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 4 169632887 169632887 G A PALLD Missense_Mutation p.G593S 0.39 tolerated(0.73) benign(0.03) TCGA-FW-A3R5-06 4 169812155 169812155 G A PALLD Missense_Mutation p.D683N 0.31 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 4 169819815 169819815 G A PALLD Missense_Mutation p.G808R 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 169846413 169846413 G A PALLD 3'UTR 0.29 TCGA-FW-A3R5-06 4 169923281 169923281 G A CBR4 Missense_Mutation p.S159L 0.21 deleterious(0) possibly_damaging(0.791) TCGA-FW-A3R5-06 4 170028273 170028273 G A SH3RF1 Silent p.T741T 0.25 TCGA-FW-A3R5-06 4 170327882 170327882 G A NEK1 Missense_Mutation p.S1080L 0.34 deleterious(0) possibly_damaging(0.882) TCGA-FW-A3R5-06 4 170498183 170498183 G A NEK1 Nonsense_Mutation p.Q306* 0.27 TCGA-FW-A3R5-06 4 170618355 170618355 C T CLCN3 Missense_Mutation p.P345S 0.34 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 4 170912824 170912824 G A MFAP3L Missense_Mutation p.P312L 0.09 deleterious(0.02) possibly_damaging(0.613) TCGA-FW-A3R5-06 4 170912825 170912825 G A MFAP3L Missense_Mutation p.P312S 0.09 tolerated(0.16) benign(0.056) TCGA-FW-A3R5-06 4 170990371 170990371 G A AADAT Missense_Mutation p.P244L 0.37 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 4 1732664 1732664 C T TACC3 Missense_Mutation p.A479V 0.09 tolerated(0.12) benign(0.309) TCGA-FW-A3R5-06 4 173873345 173873345 C T GALNTL6 Missense_Mutation p.A436V 0.28 tolerated(0.11) benign(0.004) TCGA-FW-A3R5-06 4 173942648 173942648 G A GALNTL6 Missense_Mutation p.E504K 0.17 tolerated(0.6) probably_damaging(0.989) TCGA-FW-A3R5-06 4 173961099 173961099 C T GALNTL6 Missense_Mutation p.H552Y 0.25 deleterious(0) probably_damaging(0.943) TCGA-FW-A3R5-06 4 173961318 173961318 C T GALNTL6 3'UTR 0.38 TCGA-FW-A3R5-06 4 174169386 174169386 C T GALNT7 Missense_Mutation p.R128C 0.34 deleterious(0) possibly_damaging(0.556) TCGA-FW-A3R5-06 4 174169415 174169415 C T GALNT7 Silent p.P137P 0.25 TCGA-FW-A3R5-06 4 175158427 175158427 G A FBXO8 3'UTR 0.50 TCGA-FW-A3R5-06 4 17516867 17516867 G A CLRN2 5'UTR 0.24 TCGA-FW-A3R5-06 4 175224908 175224908 C T CEP44 Nonsense_Mutation p.Q98* 0.26 TCGA-FW-A3R5-06 4 17528621 17528621 G A CLRN2 Silent p.V205V 0.27 TCGA-FW-A3R5-06 4 17528714 17528714 C T CLRN2 3'UTR 0.14 TCGA-FW-A3R5-06 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.23 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 4 175896748 175896748 C T ADAM29 Silent p.H24H 0.24 TCGA-FW-A3R5-06 4 175896749 175896749 C T ADAM29 Missense_Mutation p.P25S 0.24 tolerated(0.91) benign(0.008) TCGA-FW-A3R5-06 4 175896986 175896986 G A ADAM29 Missense_Mutation p.G104S 0.27 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 175896999 175896999 G A ADAM29 Missense_Mutation p.G108E 0.16 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A3R5-06 4 175897633 175897633 G A ADAM29 Missense_Mutation p.M319I 0.26 tolerated(0.43) benign(0.01) TCGA-FW-A3R5-06 4 175897751 175897751 G A ADAM29 Missense_Mutation p.G359S 0.29 tolerated(0.99) benign(0.012) TCGA-FW-A3R5-06 4 175897906 175897906 G A ADAM29 Silent p.E410E 0.23 TCGA-FW-A3R5-06 4 175897943 175897943 C T ADAM29 Missense_Mutation p.P423S 0.27 deleterious(0.05) possibly_damaging(0.474) TCGA-FW-A3R5-06 4 175897995 175897995 G A ADAM29 Missense_Mutation p.G440E 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 175898490 175898490 G A ADAM29 Missense_Mutation p.G605E 0.22 deleterious(0.02) probably_damaging(0.977) TCGA-FW-A3R5-06 4 175899166 175899166 G A ADAM29 3'UTR 0.32 TCGA-FW-A3R5-06 4 176555969 176555969 C T GPM6A 3'UTR 0.31 TCGA-FW-A3R5-06 4 176555998 176555998 G A GPM6A 3'UTR 0.27 TCGA-FW-A3R5-06 4 176556167 176556167 C T GPM6A Silent p.V242V 0.26 TCGA-FW-A3R5-06 4 176733434 176733434 A C GPM6A Intron 0.27 TCGA-FW-A3R5-06 4 177017641 177017641 C T WDR17 5'UTR 0.26 TCGA-FW-A3R5-06 4 177041212 177041212 G A WDR17 Missense_Mutation p.G192S 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 4 177063141 177063141 C T WDR17 Nonsense_Mutation p.R508* 0.32 TCGA-FW-A3R5-06 4 177114160 177114160 C T SPATA4 Missense_Mutation p.G139E 0.30 deleterious(0.02) probably_damaging(0.962) TCGA-FW-A3R5-06 4 177142399 177142399 C T ASB5 Missense_Mutation p.D193N 0.09 tolerated(0.78) probably_damaging(0.991) TCGA-FW-A3R5-06 4 177146484 177146484 C T ASB5 Missense_Mutation p.A69T 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 4 177190142 177190142 G A ASB5 Missense_Mutation p.H40Y 0.36 tolerated(0.15) benign(0.022) TCGA-FW-A3R5-06 4 177608588 177608588 G A VEGFC Missense_Mutation p.R300W 0.08 deleterious(0.04) benign(0.01) TCGA-FW-A3R5-06 4 17805519 17805519 A C DCAF16 Missense_Mutation p.D82E 0.13 tolerated_low_confidence(1) possibly_damaging(0.866) TCGA-FW-A3R5-06 4 178358631 178358631 G A AGA Missense_Mutation p.P184S 0.33 tolerated(0.06) possibly_damaging(0.817) TCGA-FW-A3R5-06 4 17844901 17844901 C T NCAPG Intron 0.30 TCGA-FW-A3R5-06 4 178881973 178881973 C T LINC01098 5'UTR 0.35 TCGA-FW-A3R5-06 4 178897018 178897018 G A LINC01098 Missense_Mutation p.G74E 0.29 tolerated_low_confidence(0.12) probably_damaging(0.97) TCGA-FW-A3R5-06 4 1801497 1801497 G A FGFR3 Missense_Mutation p.E135K 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-FW-A3R5-06 4 1808329 1808329 C T FGFR3 Missense_Mutation p.P698L 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 183245205 183245205 C T TENM3 Missense_Mutation p.S11F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-FW-A3R5-06 4 183652084 183652084 C T TENM3 Missense_Mutation p.S920F 0.47 deleterious(0) benign(0.096) TCGA-FW-A3R5-06 4 1836644 1836644 G A LETM1 Silent p.I268I 0.22 TCGA-FW-A3R5-06 4 183673094 183673094 C T TENM3 Silent p.V1257V 0.26 TCGA-FW-A3R5-06 4 183675643 183675643 C T TENM3 Missense_Mutation p.R1375C 0.17 deleterious(0) benign(0.136) TCGA-FW-A3R5-06 4 183675836 183675836 C T TENM3 Missense_Mutation p.S1439F 0.29 tolerated(0.17) benign(0.01) TCGA-FW-A3R5-06 4 183694775 183694775 C T TENM3 Silent p.I1681I 0.12 TCGA-FW-A3R5-06 4 183696240 183696240 G A TENM3 Silent p.L1746L 0.28 TCGA-FW-A3R5-06 4 183710312 183710312 G A TENM3 Missense_Mutation p.D1791N 0.23 deleterious(0) possibly_damaging(0.821) TCGA-FW-A3R5-06 4 183710474 183710474 G A TENM3 Missense_Mutation p.G1845R 0.29 tolerated(0.73) probably_damaging(0.98) TCGA-FW-A3R5-06 4 183713541 183713541 C T TENM3 Nonsense_Mutation p.R1906* 0.27 TCGA-FW-A3R5-06 4 183714469 183714469 G A TENM3 Missense_Mutation p.R2215Q 0.31 deleterious(0.04) possibly_damaging(0.602) TCGA-FW-A3R5-06 4 183717885 183717885 G A TENM3 Missense_Mutation p.E2437K 0.28 tolerated(0.05) possibly_damaging(0.651) TCGA-FW-A3R5-06 4 183721183 183721183 C T TENM3 Silent p.F2593F 0.50 TCGA-FW-A3R5-06 4 183959078 183959078 G A FAM92A1P2 RNA 0.43 TCGA-FW-A3R5-06 4 184175043 184175043 C T WWC2 Missense_Mutation p.P363S 0.14 deleterious(0.04) possibly_damaging(0.798) TCGA-FW-A3R5-06 4 184210648 184210648 C T WWC2 Missense_Mutation p.R1082C 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 184233578 184233578 C T WWC2 Missense_Mutation p.R1157W 0.19 deleterious(0) probably_damaging(0.912) TCGA-FW-A3R5-06 4 184241084 184241084 C T CLDN22 Silent p.L96L 0.21 TCGA-FW-A3R5-06 4 184366211 184366211 C T CDKN2AIP Silent p.F87F 0.27 TCGA-FW-A3R5-06 4 185012502 185012502 C T ENPP6 Missense_Mutation p.R384K 0.08 tolerated(0.12) benign(0.016) TCGA-FW-A3R5-06 4 185018422 185018422 C T ENPP6 Missense_Mutation p.G365S 0.16 deleterious(0.04) possibly_damaging(0.695) TCGA-FW-A3R5-06 4 185018440 185018440 C T ENPP6 Missense_Mutation p.E359K 0.32 tolerated(0.15) probably_damaging(0.928) TCGA-FW-A3R5-06 4 185309901 185309901 G A IRF2 3'UTR 0.37 TCGA-FW-A3R5-06 4 185310027 185310027 G A IRF2 Missense_Mutation p.P312L 0.32 deleterious(0.01) benign(0.022) TCGA-FW-A3R5-06 4 185691487 185691487 C T ACSL1 Intron 0.24 TCGA-FW-A3R5-06 4 185698093 185698093 G A ACSL1 Silent p.I174I 0.08 TCGA-FW-A3R5-06 4 186111405 186111405 C T KIAA1430 Missense_Mutation p.E316K 0.22 tolerated(0.77) benign(0.205) TCGA-FW-A3R5-06 4 186429496 186429496 G A PDLIM3 Nonsense_Mutation p.Q207* 0.28 TCGA-FW-A3R5-06 4 186541233 186541233 C T SORBS2 Missense_Mutation p.G959E 0.30 tolerated(0.35) benign(0.038) TCGA-FW-A3R5-06 4 186544533 186544533 C T SORBS2 Missense_Mutation p.E780K 0.22 deleterious(0.01) possibly_damaging(0.493) TCGA-FW-A3R5-06 4 186544548 186544548 C T SORBS2 Missense_Mutation p.E775K 0.13 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 186545156 186545156 G A SORBS2 Missense_Mutation p.S572F 0.26 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 186545280 186545280 G A SORBS2 Missense_Mutation p.R531C 0.31 tolerated(0.25) benign(0.016) TCGA-FW-A3R5-06 4 186545533 186545533 C T SORBS2 Silent p.R446R 0.25 TCGA-FW-A3R5-06 4 186559240 186559240 C T SORBS2 Intron 0.13 TCGA-FW-A3R5-06 4 187003942 187003942 C T TLR3 Missense_Mutation p.P368S 0.29 tolerated(0.51) benign(0.002) TCGA-FW-A3R5-06 4 187004313 187004313 C T TLR3 Silent p.A491A 0.34 TCGA-FW-A3R5-06 4 187086556 187086556 C T FAM149A Missense_Mutation p.P368S 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 187093119 187093119 G A FAM149A Missense_Mutation p.R476K 0.12 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 4 187118158 187118158 G A CYP4V2 Missense_Mutation p.E160K 0.28 tolerated(0.13) benign(0.026) TCGA-FW-A3R5-06 4 187130354 187130354 T A CYP4V2 Missense_Mutation p.F445I 0.24 deleterious(0.04) benign(0.088) TCGA-FW-A3R5-06 4 187131739 187131739 C T CYP4V2 Missense_Mutation p.R508C 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 187153312 187153312 C A KLKB1 Missense_Mutation p.F30L 0.30 tolerated(0.16) probably_damaging(0.999) TCGA-FW-A3R5-06 4 187172751 187172751 C T KLKB1 Missense_Mutation p.R327C 0.31 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 4 187172781 187172781 C T KLKB1 Missense_Mutation p.P337S 0.25 tolerated(0.23) probably_damaging(0.957) TCGA-FW-A3R5-06 4 187192915 187192915 C T F11 Missense_Mutation p.P70S 0.21 tolerated(0.28) benign(0.089) TCGA-FW-A3R5-06 4 187201178 187201178 C T F11 Silent p.L256L 0.29 TCGA-FW-A3R5-06 4 187205268 187205268 C T F11 Silent p.P386P 0.26 TCGA-FW-A3R5-06 4 187206877 187206877 C T F11 Nonsense_Mutation p.Q464* 0.37 TCGA-FW-A3R5-06 4 187209716 187209716 C T F11 Missense_Mutation p.T609I 0.13 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 187209853 187209853 C T F11 3'UTR 0.70 TCGA-FW-A3R5-06 4 187454827 187454827 G A MTNR1A 3'UTR 0.32 TCGA-FW-A3R5-06 4 187455657 187455657 G A MTNR1A Missense_Mutation p.P80L 0.31 deleterious(0) benign(0.031) TCGA-FW-A3R5-06 4 187509917 187509917 G A FAT1 Silent p.V4532V 0.20 TCGA-FW-A3R5-06 4 187509969 187509969 G A FAT1 Missense_Mutation p.P4515L 0.25 benign(0.119) TCGA-FW-A3R5-06 4 187524930 187524930 G A FAT1 Missense_Mutation p.P3584S 0.22 benign(0.057) TCGA-FW-A3R5-06 4 187535466 187535466 G A FAT1 Silent p.V3036V 0.32 TCGA-FW-A3R5-06 4 187542685 187542685 G A FAT1 Silent p.F1685F 0.24 TCGA-FW-A3R5-06 4 187542889 187542889 G A FAT1 Silent p.G1617G 0.26 TCGA-FW-A3R5-06 4 187629015 187629015 G A FAT1 Missense_Mutation p.P656L 0.29 probably_damaging(0.993) TCGA-FW-A3R5-06 4 188924294 188924294 C T ZFP42 Silent p.F111F 0.29 TCGA-FW-A3R5-06 4 188924639 188924639 C T ZFP42 Silent p.F226F 0.29 TCGA-FW-A3R5-06 4 188924799 188924799 C T ZFP42 Nonsense_Mutation p.Q280* 0.41 TCGA-FW-A3R5-06 4 188924844 188924844 C T ZFP42 Missense_Mutation p.H295Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 189012603 189012603 G A TRIML2 Missense_Mutation p.P363L 0.13 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 4 189012653 189012653 G A TRIML2 Silent p.S346S 0.33 TCGA-FW-A3R5-06 4 189020234 189020234 C T TRIML2 Silent p.V142V 0.24 TCGA-FW-A3R5-06 4 189022399 189022399 C T TRIML2 Silent p.E47E 0.25 TCGA-FW-A3R5-06 4 189025997 189025997 C T TRIML2 Missense_Mutation p.M43I 0.26 tolerated(0.23) benign(0.017) TCGA-FW-A3R5-06 4 189060653 189060653 G A TRIML1 5'UTR 0.29 TCGA-FW-A3R5-06 4 189060655 189060655 G A TRIML1 5'UTR 0.31 TCGA-FW-A3R5-06 4 189060833 189060833 C T TRIML1 Missense_Mutation p.L41F 0.30 tolerated(0.06) probably_damaging(0.961) TCGA-FW-A3R5-06 4 189064931 189064931 G A TRIML1 Intron 0.32 TCGA-FW-A3R5-06 4 189065004 189065004 G A TRIML1 Missense_Mutation p.A250T 0.26 tolerated(1) benign(0.004) TCGA-FW-A3R5-06 4 189065014 189065014 G A TRIML1 Missense_Mutation p.R253K 0.18 tolerated(0.09) probably_damaging(0.986) TCGA-FW-A3R5-06 4 189065209 189065209 C T TRIML1 Nonsense_Mutation p.Q260* 0.23 TCGA-FW-A3R5-06 4 189068185 189068185 G A TRIML1 Missense_Mutation p.G356S 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 4 189068247 189068247 C T TRIML1 Silent p.F376F 0.17 TCGA-FW-A3R5-06 4 189068475 189068475 G A TRIML1 Silent p.E452E 0.11 TCGA-FW-A3R5-06 4 1957858 1957858 G A WHSC1 Missense_Mutation p.G942R 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 20482391 20482391 C T SLIT2 Missense_Mutation p.L174F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 4 20512748 20512748 C T SLIT2 Missense_Mutation p.S349F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 4 20525739 20525739 C T SLIT2 Silent p.S459S 0.19 TCGA-FW-A3R5-06 4 20525740 20525740 C T SLIT2 Missense_Mutation p.P460S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 20552473 20552473 C T SLIT2 Missense_Mutation p.S838F 0.25 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 4 20555588 20555588 C T SLIT2 Nonsense_Mutation p.Q908* 0.29 TCGA-FW-A3R5-06 4 20618815 20618815 G A SLIT2 Missense_Mutation p.G1377E 0.12 tolerated(0.12) probably_damaging(1) TCGA-FW-A3R5-06 4 20620505 20620505 G A SLIT2 Missense_Mutation p.G1488E 0.37 deleterious(0.02) benign(0.013) TCGA-FW-A3R5-06 4 20620576 20620576 T C SLIT2 Missense_Mutation p.F1512L 0.43 tolerated(0.05) probably_damaging(0.968) TCGA-FW-A3R5-06 4 20734318 20734318 C T KCNIP4 Missense_Mutation p.E210K 0.32 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 4 20884243 20884243 G A KCNIP4 Missense_Mutation p.P51S 0.11 tolerated(0.36) benign(0) TCGA-FW-A3R5-06 4 2132987 2132987 G A POLN Nonsense_Mutation p.Q588* 0.07 TCGA-FW-A3R5-06 4 21698984 21698984 G A KCNIP4 Intron 0.25 TCGA-FW-A3R5-06 4 2172905 2172905 G A POLN Missense_Mutation p.R460C 0.31 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 4 22389807 22389807 G A GPR125 Nonsense_Mutation p.R1163* 0.30 TCGA-FW-A3R5-06 4 22390168 22390168 G A GPR125 Silent p.F1042F 0.60 TCGA-FW-A3R5-06 4 2272573 2272573 G A ZFYVE28 Missense_Mutation p.S848L 0.09 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 4 2306249 2306249 G A ZFYVE28 Silent p.A606A 0.16 TCGA-FW-A3R5-06 4 23797410 23797410 C T PPARGC1A 3'UTR 0.30 TCGA-FW-A3R5-06 4 23803392 23803392 C T PPARGC1A Missense_Mutation p.G752R 0.13 deleterious(0) unknown(0) TCGA-FW-A3R5-06 4 23803905 23803905 C T PPARGC1A Missense_Mutation p.D695N 0.09 deleterious(0.04) unknown(0) TCGA-FW-A3R5-06 4 23814665 23814665 G A PPARGC1A Missense_Mutation p.S626L 0.35 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 4 23815352 23815352 C T PPARGC1A Missense_Mutation p.R585K 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 4 23816229 23816229 C T PPARGC1A Splice_Site p.X293_splice 0.30 TCGA-FW-A3R5-06 4 23830128 23830128 C T PPARGC1A Missense_Mutation p.D218N 0.23 tolerated(0.16) benign(0.148) TCGA-FW-A3R5-06 4 25005323 25005323 C T LGI2 Missense_Mutation p.G463E 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 25005324 25005324 C A LGI2 Missense_Mutation p.G463W 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 25014056 25014056 C T LGI2 Missense_Mutation p.D241N 0.22 deleterious(0.01) possibly_damaging(0.757) TCGA-FW-A3R5-06 4 25664416 25664416 G A SLC34A2 Missense_Mutation p.D68N 0.27 deleterious(0.02) possibly_damaging(0.803) TCGA-FW-A3R5-06 4 25675929 25675929 C T SLC34A2 Missense_Mutation p.P410S 0.33 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 4 25678098 25678098 G A SLC34A2 Silent p.L600L 0.23 TCGA-FW-A3R5-06 4 25785868 25785868 C T SEL1L3 Missense_Mutation p.M754I 0.34 deleterious(0.01) probably_damaging(0.91) TCGA-FW-A3R5-06 4 25789932 25789932 C T SEL1L3 Missense_Mutation p.E711K 0.25 tolerated(0.46) benign(0.131) TCGA-FW-A3R5-06 4 25819833 25819833 G A SEL1L3 Silent p.F497F 0.29 TCGA-FW-A3R5-06 4 25834646 25834646 G A SEL1L3 Nonsense_Mutation p.R357* 0.28 TCGA-FW-A3R5-06 4 26387991 26387991 C T RBPJ Missense_Mutation p.P26S 0.18 tolerated(0.89) benign(0) TCGA-FW-A3R5-06 4 26484791 26484791 C T CCKAR Silent p.K247K 0.28 TCGA-FW-A3R5-06 4 26719613 26719613 C T TBC1D19 Missense_Mutation p.A338V 0.25 tolerated(0.06) probably_damaging(0.981) TCGA-FW-A3R5-06 4 27009158 27009158 C T STIM2 Missense_Mutation p.R329C 0.10 deleterious(0) possibly_damaging(0.789) TCGA-FW-A3R5-06 4 27010620 27010620 T A STIM2 Missense_Mutation p.F503L 0.27 tolerated(0.1) benign(0.008) TCGA-FW-A3R5-06 4 2829023 2829023 C T SH3BP2 Silent p.S222S 0.27 TCGA-FW-A3R5-06 4 2935555 2935555 G A MFSD10 Silent p.L32L 0.50 TCGA-FW-A3R5-06 4 3040238 3040238 G A GRK4 Missense_Mutation p.G561R 0.19 tolerated(0.12) possibly_damaging(0.771) TCGA-FW-A3R5-06 4 3101050 3101050 C T HTT Silent p.L133L 0.09 TCGA-FW-A3R5-06 4 31144214 31144214 C T PCDH7 Nonsense_Mutation p.Q1171* 0.28 TCGA-FW-A3R5-06 4 3174071 3174071 C T HTT Silent p.L1297L 0.08 TCGA-FW-A3R5-06 4 3174736 3174736 C T HTT Silent p.S1348S 0.28 TCGA-FW-A3R5-06 4 3180142 3180142 C T HTT Silent p.I1527I 0.19 TCGA-FW-A3R5-06 4 3188392 3188392 C T HTT Silent p.S1645S 0.27 TCGA-FW-A3R5-06 4 3214288 3214288 C T HTT Intron 0.25 TCGA-FW-A3R5-06 4 3318208 3318208 C T RGS12 Missense_Mutation p.S104F 0.24 deleterious(0.04) benign(0.142) TCGA-FW-A3R5-06 4 3319150 3319150 C T RGS12 Missense_Mutation p.T418I 0.29 deleterious(0.01) benign(0.282) TCGA-FW-A3R5-06 4 3319755 3319755 C T RGS12 Nonsense_Mutation p.R620* 0.34 TCGA-FW-A3R5-06 4 3424212 3424212 C T RGS12 Missense_Mutation p.S983F 0.27 deleterious(0.02) probably_damaging(0.983) TCGA-FW-A3R5-06 4 3432637 3432637 C T RGS12 Missense_Mutation p.P1357S 0.28 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 4 3445789 3445789 G A HGFAC Missense_Mutation p.G167S 0.34 tolerated(0.85) benign(0.004) TCGA-FW-A3R5-06 4 3516553 3516553 C T LRPAP1 Missense_Mutation p.D313N 0.17 deleterious(0.01) possibly_damaging(0.84) TCGA-FW-A3R5-06 4 36069802 36069802 G A ARAP2 Silent p.H1614H 0.17 TCGA-FW-A3R5-06 4 36093535 36093535 C T ARAP2 Missense_Mutation p.D1465N 0.25 tolerated(0.05) benign(0.069) TCGA-FW-A3R5-06 4 36109295 36109295 C T ARAP2 Missense_Mutation p.E1393K 0.30 deleterious(0) probably_damaging(0.91) TCGA-FW-A3R5-06 4 36118737 36118737 C A ARAP2 Missense_Mutation p.L1328F 0.16 deleterious(0) possibly_damaging(0.835) TCGA-FW-A3R5-06 4 36122827 36122827 T A ARAP2 Missense_Mutation p.I1290F 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 4 36130237 36130237 C T ARAP2 Silent p.T1186T 0.25 TCGA-FW-A3R5-06 4 36130328 36130328 G A ARAP2 Missense_Mutation p.P1156L 0.22 deleterious(0) benign(0.155) TCGA-FW-A3R5-06 4 36149243 36149243 G A ARAP2 Silent p.S1042S 0.22 TCGA-FW-A3R5-06 4 36149358 36149358 G A ARAP2 Missense_Mutation p.P1004L 0.35 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 4 36150108 36150108 G A ARAP2 Silent p.I973I 0.25 TCGA-FW-A3R5-06 4 36166573 36166573 G A ARAP2 Silent p.S712S 0.10 TCGA-FW-A3R5-06 4 36166615 36166615 C T ARAP2 Silent p.R698R 0.18 TCGA-FW-A3R5-06 4 36179516 36179516 C T ARAP2 Missense_Mutation p.R597K 0.15 tolerated(1) benign(0.196) TCGA-FW-A3R5-06 4 36216041 36216041 C T ARAP2 Intron 0.13 TCGA-FW-A3R5-06 4 36230381 36230381 G A ARAP2 Missense_Mutation p.S243F 0.30 deleterious_low_confidence(0) benign(0.012) TCGA-FW-A3R5-06 4 36230589 36230589 C T ARAP2 Missense_Mutation p.D174N 0.32 tolerated_low_confidence(0.43) benign(0) TCGA-FW-A3R5-06 4 36230669 36230669 G A ARAP2 Missense_Mutation p.S147F 0.29 tolerated_low_confidence(0.19) benign(0.068) TCGA-FW-A3R5-06 4 367194 367194 C T ZNF141 Missense_Mutation p.S323F 0.23 tolerated(0.42) probably_damaging(0.942) TCGA-FW-A3R5-06 4 3769561 3769561 G A ADRA2C Missense_Mutation p.E410K 0.42 tolerated(0.2) benign(0.121) TCGA-FW-A3R5-06 4 37831637 37831637 G A PGM2 Missense_Mutation p.E45K 0.33 tolerated(0.87) benign(0.025) TCGA-FW-A3R5-06 4 38091684 38091684 A T TBC1D1 Missense_Mutation p.I728F 0.07 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 38775237 38775237 C T TLR10 Missense_Mutation p.E659K 0.27 tolerated(0.05) benign(0.052) TCGA-FW-A3R5-06 4 38775563 38775563 G A TLR10 Missense_Mutation p.S550L 0.25 deleterious(0.03) benign(0.02) TCGA-FW-A3R5-06 4 38776168 38776168 C T TLR10 Silent p.T348T 0.25 TCGA-FW-A3R5-06 4 38776440 38776440 C T TLR10 Missense_Mutation p.D258N 0.22 tolerated(0.46) benign(0.15) TCGA-FW-A3R5-06 4 38907180 38907180 C T FAM114A1 Silent p.A158A 0.23 TCGA-FW-A3R5-06 4 38937369 38937369 C T FAM114A1 Silent p.A498A 0.16 TCGA-FW-A3R5-06 4 38972667 38972667 C T TMEM156 3'UTR 0.09 TCGA-FW-A3R5-06 4 39000451 39000451 G A TMEM156 Missense_Mutation p.S56F 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 4 39000465 39000465 G A TMEM156 Silent p.S51S 0.36 TCGA-FW-A3R5-06 4 39082836 39082836 C T KLHL5 Missense_Mutation p.S273F 0.29 tolerated(0.12) possibly_damaging(0.603) TCGA-FW-A3R5-06 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 39122695 39122695 C T KLHL5 3'UTR 0.12 TCGA-FW-A3R5-06 4 39245969 39245969 C T WDR19 Silent p.V841V 0.29 TCGA-FW-A3R5-06 4 39304389 39304389 G A RFC1 Missense_Mutation p.R771C 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 39409223 39409223 C T KLB Silent p.F218F 0.27 TCGA-FW-A3R5-06 4 39435943 39435943 G A KLB Silent p.T313T 0.25 TCGA-FW-A3R5-06 4 39436236 39436236 G A KLB Missense_Mutation p.R411Q 0.27 tolerated(0.46) benign(0.126) TCGA-FW-A3R5-06 4 39465209 39465209 C T LIAS Missense_Mutation p.A126V 0.24 deleterious(0.02) possibly_damaging(0.792) TCGA-FW-A3R5-06 4 39469178 39469178 C T LIAS Nonsense_Mutation p.R217* 0.32 TCGA-FW-A3R5-06 4 39482951 39482951 G A LIAS 3'Flank 0.21 TCGA-FW-A3R5-06 4 3949503 3949503 G A FAM86EP RNA 0.10 TCGA-FW-A3R5-06 4 3949556 3949556 G A FAM86EP RNA 0.12 TCGA-FW-A3R5-06 4 40045328 40045328 C T RP11-333E13.4 RNA 0.37 TCGA-FW-A3R5-06 4 40045360 40045360 G A RP11-333E13.4 RNA 0.41 TCGA-FW-A3R5-06 4 40045554 40045554 G A RP11-333E13.4 RNA 0.27 TCGA-FW-A3R5-06 4 40123361 40123361 T A N4BP2 Silent p.T1210T 0.35 TCGA-FW-A3R5-06 4 40245409 40245409 G A RHOH Missense_Mutation p.E135K 0.29 tolerated(0.05) benign(0.062) TCGA-FW-A3R5-06 4 40337484 40337484 G A CHRNA9 5'UTR 0.23 TCGA-FW-A3R5-06 4 40351347 40351347 G A CHRNA9 Missense_Mutation p.G272R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 40356406 40356406 G A CHRNA9 Missense_Mutation p.D437N 0.10 tolerated(0.11) possibly_damaging(0.474) TCGA-FW-A3R5-06 4 40427920 40427920 C T RBM47 3'UTR 0.29 TCGA-FW-A3R5-06 4 40438554 40438554 G A RBM47 Missense_Mutation p.H412Y 0.07 tolerated_low_confidence(0.39) probably_damaging(0.968) TCGA-FW-A3R5-06 4 40440176 40440176 C T RBM47 Silent p.V245V 0.28 TCGA-FW-A3R5-06 4 40440305 40440305 C T RBM47 Silent p.E202E 0.21 TCGA-FW-A3R5-06 4 40440346 40440346 C T RBM47 Missense_Mutation p.D189N 0.36 tolerated(0.05) probably_damaging(0.981) TCGA-FW-A3R5-06 4 40440502 40440502 G A RBM47 Missense_Mutation p.R137C 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 4 40440697 40440697 C T RBM47 Missense_Mutation p.E72K 0.25 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 4 40752702 40752702 G A NSUN7 5'UTR 0.27 TCGA-FW-A3R5-06 4 40778245 40778245 G A NSUN7 Silent p.L335L 0.23 TCGA-FW-A3R5-06 4 40946922 40946922 G A APBB2 Missense_Mutation p.S335L 0.18 deleterious(0.04) benign(0.04) TCGA-FW-A3R5-06 4 41263915 41263915 C T UCHL1 Missense_Mutation p.A145V 0.11 tolerated(0.17) benign(0.081) TCGA-FW-A3R5-06 4 41270149 41270149 C T UCHL1 3'UTR 0.25 TCGA-FW-A3R5-06 4 41496622 41496622 G A LIMCH1 Missense_Mutation p.E56K 0.25 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 4 41608021 41608021 G A LIMCH1 Silent p.K162K 0.26 TCGA-FW-A3R5-06 4 41615664 41615664 G A LIMCH1 Missense_Mutation p.R223K 0.12 deleterious(0.04) possibly_damaging(0.692) TCGA-FW-A3R5-06 4 41615665 41615665 G A LIMCH1 Silent p.R223R 0.11 TCGA-FW-A3R5-06 4 41621522 41621522 C T LIMCH1 Intron 0.22 TCGA-FW-A3R5-06 4 41648595 41648595 C T LIMCH1 Silent p.F450F 0.22 TCGA-FW-A3R5-06 4 41664893 41664893 G A LIMCH1 Silent p.V676V 0.10 TCGA-FW-A3R5-06 4 41686444 41686444 G A LIMCH1 Silent p.G908G 0.20 TCGA-FW-A3R5-06 4 41689911 41689911 C T LIMCH1 Silent p.T997T 0.21 TCGA-FW-A3R5-06 4 41689912 41689912 C T LIMCH1 Missense_Mutation p.P998S 0.21 tolerated(0.06) benign(0.004) TCGA-FW-A3R5-06 4 41694356 41694356 C T LIMCH1 Nonsense_Mutation p.R1061* 0.15 TCGA-FW-A3R5-06 4 41699344 41699344 C T LIMCH1 3'UTR 0.33 TCGA-FW-A3R5-06 4 41750565 41750565 C T PHOX2B Missense_Mutation p.M21I 0.28 tolerated(0.08) benign(0.432) TCGA-FW-A3R5-06 4 419584 419584 G A ABCA11P RNA 0.20 TCGA-FW-A3R5-06 4 41983788 41983788 G A DCAF4L1 5'UTR 0.22 TCGA-FW-A3R5-06 4 41984913 41984913 C T DCAF4L1 Silent p.F368F 0.40 TCGA-FW-A3R5-06 4 4199219 4199219 G A OTOP1 Missense_Mutation p.H448Y 0.18 tolerated(0.54) benign(0.02) TCGA-FW-A3R5-06 4 4199453 4199453 G A OTOP1 Missense_Mutation p.R370W 0.30 tolerated(0.33) benign(0.009) TCGA-FW-A3R5-06 4 420330 420330 G A ABCA11P RNA 0.27 TCGA-FW-A3R5-06 4 420538 420538 G A ABCA11P RNA 0.33 TCGA-FW-A3R5-06 4 42119521 42119521 G A BEND4 3'UTR 0.22 TCGA-FW-A3R5-06 4 42122113 42122113 C T BEND4 Missense_Mutation p.E449K 0.32 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FW-A3R5-06 4 42122179 42122179 C T BEND4 Missense_Mutation p.E427K 0.11 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-FW-A3R5-06 4 42145615 42145615 G A BEND4 Missense_Mutation p.S295F 0.28 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-FW-A3R5-06 4 42145908 42145908 C T BEND4 Missense_Mutation p.M197I 0.24 tolerated_low_confidence(0.1) benign(0.019) TCGA-FW-A3R5-06 4 42403225 42403225 C T SHISA3 Silent p.P158P 0.29 TCGA-FW-A3R5-06 4 42414957 42414957 C T ATP8A1 Silent p.T1157T 0.24 TCGA-FW-A3R5-06 4 42457418 42457418 G A ATP8A1 Missense_Mutation p.P905S 0.25 deleterious(0.01) benign(0.09) TCGA-FW-A3R5-06 4 42509145 42509145 G A ATP8A1 Silent p.A658A 0.24 TCGA-FW-A3R5-06 4 42554560 42554560 C T ATP8A1 Missense_Mutation p.R494Q 0.28 tolerated(0.08) benign(0.27) TCGA-FW-A3R5-06 4 42581868 42581868 C T ATP8A1 Missense_Mutation p.R321Q 0.19 tolerated(0.43) benign(0.002) TCGA-FW-A3R5-06 4 44449850 44449850 G C KCTD8 Missense_Mutation p.R231G 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-FW-A3R5-06 4 44449852 44449852 C T KCTD8 Missense_Mutation p.R230Q 0.29 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 4 44624497 44624497 C T YIPF7 Silent p.Q259Q 0.16 TCGA-FW-A3R5-06 4 44624560 44624560 G A YIPF7 Silent p.I238I 0.25 TCGA-FW-A3R5-06 4 44626787 44626787 G A YIPF7 Nonsense_Mutation p.Q171* 0.29 TCGA-FW-A3R5-06 4 44637951 44637951 G A YIPF7 Missense_Mutation p.P114S 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 4 46060385 46060385 C T GABRG1 Silent p.G255G 0.28 TCGA-FW-A3R5-06 4 46067533 46067533 C T GABRG1 Missense_Mutation p.M130I 0.25 tolerated(0.36) benign(0.002) TCGA-FW-A3R5-06 4 46086047 46086047 C T GABRG1 Missense_Mutation p.D93N 0.42 tolerated(0.12) benign(0.159) TCGA-FW-A3R5-06 4 46125901 46125901 G A GABRG1 Silent p.S10S 0.11 TCGA-FW-A3R5-06 4 46125980 46125980 G A GABRG1 5'UTR 0.37 TCGA-FW-A3R5-06 4 46263977 46263977 C T GABRA2 Nonsense_Mutation p.W342* 0.24 TCGA-FW-A3R5-06 4 46263989 46263989 G A GABRA2 Missense_Mutation p.T338I 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 46312191 46312191 G A GABRA2 Silent p.S186S 0.07 TCGA-FW-A3R5-06 4 46930315 46930315 C T GABRA4 Missense_Mutation p.G531E 0.18 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 4 46930755 46930755 C T GABRA4 Silent p.L384L 0.26 TCGA-FW-A3R5-06 4 46967040 46967040 C T GABRA4 Missense_Mutation p.E361K 0.35 tolerated(0.71) possibly_damaging(0.665) TCGA-FW-A3R5-06 4 47405691 47405691 G A GABRB1 Nonsense_Mutation p.W266* 0.13 TCGA-FW-A3R5-06 4 47514787 47514787 G A ATP10D Missense_Mutation p.R77Q 0.32 tolerated(0.18) benign(0.332) TCGA-FW-A3R5-06 4 47527654 47527654 C T ATP10D Silent p.G257G 0.19 TCGA-FW-A3R5-06 4 47538911 47538911 G A ATP10D Missense_Mutation p.R451Q 0.49 deleterious(0) possibly_damaging(0.643) TCGA-FW-A3R5-06 4 47548875 47548875 C T ATP10D Missense_Mutation p.P544L 0.17 deleterious(0.01) possibly_damaging(0.752) TCGA-FW-A3R5-06 4 47559743 47559743 C T ATP10D Silent p.F629F 0.21 TCGA-FW-A3R5-06 4 47560241 47560241 G A ATP10D Silent p.T795T 0.29 TCGA-FW-A3R5-06 4 47561043 47561043 G A ATP10D Silent p.K846K 0.16 TCGA-FW-A3R5-06 4 47593172 47593172 G A ATP10D Missense_Mutation p.G1352E 0.20 tolerated(0.61) benign(0.002) TCGA-FW-A3R5-06 4 47602361 47602361 G A CORIN Missense_Mutation p.P939L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 47605684 47605684 T G CORIN Silent p.R848R 0.09 TCGA-FW-A3R5-06 4 47663777 47663777 C T CORIN Silent p.E562E 0.24 TCGA-FW-A3R5-06 4 47682233 47682233 C T CORIN Missense_Mutation p.G353R 0.21 tolerated(0.09) probably_damaging(1) TCGA-FW-A3R5-06 4 47746586 47746586 G A CORIN Missense_Mutation p.P211L 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 4 47746591 47746591 G A CORIN Silent p.L209L 0.08 TCGA-FW-A3R5-06 4 47765403 47765403 C T CORIN Missense_Mutation p.D204N 0.24 tolerated(0.1) possibly_damaging(0.624) TCGA-FW-A3R5-06 4 47765425 47765425 G A CORIN Silent p.F196F 0.23 TCGA-FW-A3R5-06 4 47938716 47938716 C T CNGA1 Missense_Mutation p.G668R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 47942791 47942791 C T CNGA1 Missense_Mutation p.R287Q 0.27 tolerated(0.2) probably_damaging(0.98) TCGA-FW-A3R5-06 4 47945211 47945211 C T CNGA1 Missense_Mutation p.D215N 0.22 tolerated(0.22) benign(0.006) TCGA-FW-A3R5-06 4 48035011 48035011 G A NIPAL1 Missense_Mutation p.M124I 0.20 deleterious(0.02) benign(0.023) TCGA-FW-A3R5-06 4 48036926 48036926 G A NIPAL1 Missense_Mutation p.E164K 0.35 deleterious(0.01) benign(0.14) TCGA-FW-A3R5-06 4 48069537 48069537 C T TXK 3'UTR 0.17 TCGA-FW-A3R5-06 4 48073536 48073536 C T TXK Missense_Mutation p.E505K 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-FW-A3R5-06 4 48076025 48076025 G A TXK Silent p.F428F 0.09 TCGA-FW-A3R5-06 4 48091703 48091703 C T TXK Intron 0.32 TCGA-FW-A3R5-06 4 48230567 48230567 G A TEC Missense_Mutation p.S22L 0.35 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 48567670 48567670 G A FRYL Missense_Mutation p.R1070C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 48597980 48597980 G A FRYL Missense_Mutation p.S358F 0.17 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 4 48887481 48887481 G A OCIAD2 3'UTR 0.18 TCGA-FW-A3R5-06 4 48994003 48994003 T C CWH43 Missense_Mutation p.L136P 0.27 deleterious(0.02) probably_damaging(0.926) TCGA-FW-A3R5-06 4 48996764 48996764 G A CWH43 Missense_Mutation p.G214R 0.28 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 4 49005761 49005761 C T CWH43 Missense_Mutation p.S271L 0.32 deleterious(0) possibly_damaging(0.65) TCGA-FW-A3R5-06 4 49052746 49052746 G A CWH43 Missense_Mutation p.S634N 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 49063860 49063860 G A CWH43 Missense_Mutation p.E685K 0.33 tolerated(0.37) benign(0.006) TCGA-FW-A3R5-06 4 5021056 5021056 G A CYTL1 Silent p.T39T 0.35 TCGA-FW-A3R5-06 4 514923 514923 C T PIGG Missense_Mutation p.S398L 0.27 deleterious(0) possibly_damaging(0.792) TCGA-FW-A3R5-06 4 517373 517373 C T PIGG Silent p.F580F 0.31 TCGA-FW-A3R5-06 4 517561 517561 C T PIGG Missense_Mutation p.S643F 0.22 tolerated(0.11) benign(0.002) TCGA-FW-A3R5-06 4 520865 520865 C T PIGG Missense_Mutation p.L703F 0.27 tolerated(0.28) benign(0.007) TCGA-FW-A3R5-06 4 527691 527691 C T PIGG Silent p.L886L 0.37 TCGA-FW-A3R5-06 4 52861734 52861734 G A LRRC66 Missense_Mutation p.S485L 0.28 tolerated(0.74) benign(0) TCGA-FW-A3R5-06 4 52861758 52861758 C G LRRC66 Missense_Mutation p.R477T 0.23 tolerated(0.63) benign(0.001) TCGA-FW-A3R5-06 4 52861992 52861992 G A LRRC66 Missense_Mutation p.P399L 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 52917750 52917750 C T SPATA18 5'UTR 0.31 TCGA-FW-A3R5-06 4 52926959 52926959 G A SPATA18 Missense_Mutation p.D69N 0.10 tolerated(0.38) benign(0.418) TCGA-FW-A3R5-06 4 52927008 52927008 C T SPATA18 Missense_Mutation p.S85F 0.34 deleterious(0.03) probably_damaging(0.983) TCGA-FW-A3R5-06 4 52944946 52944946 C T SPATA18 Missense_Mutation p.H356Y 0.18 deleterious(0) benign(0.026) TCGA-FW-A3R5-06 4 52945952 52945952 C T SPATA18 Missense_Mutation p.P408S 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 4 52945956 52945956 C T SPATA18 Missense_Mutation p.P409L 0.28 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 4 52946055 52946055 G A SPATA18 Missense_Mutation p.G442E 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 52961071 52961071 C T SPATA18 3'UTR 0.30 TCGA-FW-A3R5-06 4 53372 53372 G A ZNF595 5'UTR 0.04 TCGA-FW-A3R5-06 4 53476724 53476724 G A USP46 Silent p.S207S 0.30 TCGA-FW-A3R5-06 4 54343015 54343015 T C LNX1 Silent p.E599E 0.08 TCGA-FW-A3R5-06 4 54362336 54362336 C T LNX1 Missense_Mutation p.D402N 0.08 deleterious(0.04) benign(0.232) TCGA-FW-A3R5-06 4 54364824 54364824 C T LNX1 Missense_Mutation p.G321E 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 54364942 54364942 G A LNX1 Missense_Mutation p.P282S 0.32 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 4 54373514 54373514 C T LNX1 Missense_Mutation p.E249K 0.28 tolerated(0.45) benign(0.371) TCGA-FW-A3R5-06 4 54966673 54966673 G A GSX2 Silent p.K54K 0.38 TCGA-FW-A3R5-06 4 55127312 55127312 G A PDGFRA Missense_Mutation p.E34K 0.18 tolerated(0.81) benign(0.009) TCGA-FW-A3R5-06 4 55130150 55130150 G A PDGFRA Intron 0.41 TCGA-FW-A3R5-06 4 55131063 55131063 C T PDGFRA Intron 0.30 TCGA-FW-A3R5-06 4 55138596 55138596 C T PDGFRA Missense_Mutation p.H425Y 0.23 tolerated(0.09) possibly_damaging(0.664) TCGA-FW-A3R5-06 4 55139748 55139748 C T PDGFRA Missense_Mutation p.S470L 0.21 tolerated(0.19) benign(0.342) TCGA-FW-A3R5-06 4 55144597 55144597 G A PDGFRA Missense_Mutation p.D691N 0.19 tolerated(0.05) benign(0.301) TCGA-FW-A3R5-06 4 55161495 55161495 G A PDGFRA 3'UTR 0.19 TCGA-FW-A3R5-06 4 55564480 55564480 C T KIT Missense_Mutation p.S123F 0.33 tolerated(0.7) benign(0) TCGA-FW-A3R5-06 4 55946104 55946104 C T KDR 3'UTR 0.26 TCGA-FW-A3R5-06 4 55946105 55946105 C T KDR 3'UTR 0.34 TCGA-FW-A3R5-06 4 55948773 55948773 C T KDR Missense_Mutation p.S1231N 0.15 tolerated(0.09) probably_damaging(0.971) TCGA-FW-A3R5-06 4 55953808 55953808 G A KDR Missense_Mutation p.P1210S 0.22 tolerated(0.14) benign(0.14) TCGA-FW-A3R5-06 4 55955574 55955574 C T KDR Missense_Mutation p.R1124K 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 4 55956220 55956220 C T KDR Missense_Mutation p.R1032Q 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 55958861 55958861 C T KDR Missense_Mutation p.D998N 0.23 tolerated(0.51) benign(0.015) TCGA-FW-A3R5-06 4 55961752 55961752 G A KDR Missense_Mutation p.P937S 0.26 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3R5-06 4 55961753 55961753 G A KDR Silent p.V936V 0.25 TCGA-FW-A3R5-06 4 55964954 55964954 C T KDR Silent p.T761T 0.31 TCGA-FW-A3R5-06 4 55968569 55968569 G A KDR Silent p.I698I 0.37 TCGA-FW-A3R5-06 4 55973911 55973911 C T KDR Missense_Mutation p.E469K 0.29 tolerated(0.94) benign(0.001) TCGA-FW-A3R5-06 4 55976628 55976628 G A KDR Silent p.I399I 0.31 TCGA-FW-A3R5-06 4 55976645 55976645 C T KDR Missense_Mutation p.G394R 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 56225558 56225558 C T SRD5A3 Silent p.F89F 0.19 TCGA-FW-A3R5-06 4 56471487 56471487 G A NMU Silent p.L130L 0.24 TCGA-FW-A3R5-06 4 56496595 56496595 C T NMU Missense_Mutation p.E49K 0.09 deleterious(0.01) benign(0.015) TCGA-FW-A3R5-06 4 56768600 56768600 C T EXOC1 Missense_Mutation p.R810C 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 56823451 56823451 C T CEP135 Missense_Mutation p.P179S 0.16 deleterious(0.04) probably_damaging(0.986) TCGA-FW-A3R5-06 4 56823511 56823511 C T CEP135 Missense_Mutation p.L199F 0.19 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 4 57176870 57176870 C T KIAA1211 Silent p.L108L 0.30 TCGA-FW-A3R5-06 4 57180319 57180319 C T KIAA1211 Silent p.S217S 0.22 TCGA-FW-A3R5-06 4 57182007 57182007 G A KIAA1211 Missense_Mutation p.R780Q 0.23 tolerated(0.91) benign(0.417) TCGA-FW-A3R5-06 4 57350913 57350913 C T SRP72 Silent p.C323C 0.18 TCGA-FW-A3R5-06 4 57860961 57860961 C T POLR2B Missense_Mutation p.R169C 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-FW-A3R5-06 4 5853187 5853187 G A CRMP1 Missense_Mutation p.S277F 0.28 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 4 5868478 5868478 G A CRMP1 Silent p.D129D 0.20 TCGA-FW-A3R5-06 4 5961342 5961342 G A C4orf50 Silent p.S671S 0.17 TCGA-FW-A3R5-06 4 6051600 6051600 C T JAKMIP1 Splice_Site p.X637_splice 0.27 TCGA-FW-A3R5-06 4 6055649 6055649 G A JAKMIP1 Intron 0.31 TCGA-FW-A3R5-06 4 6055729 6055729 G A JAKMIP1 Intron 0.23 TCGA-FW-A3R5-06 4 6055780 6055780 G A JAKMIP1 Silent p.L601L 0.28 TCGA-FW-A3R5-06 4 6062186 6062186 C T JAKMIP1 Missense_Mutation p.E537K 0.33 deleterious(0) benign(0.379) TCGA-FW-A3R5-06 4 6062203 6062203 C T JAKMIP1 Missense_Mutation p.R531K 0.21 tolerated(0.08) benign(0.041) TCGA-FW-A3R5-06 4 6064099 6064099 G A JAKMIP1 Silent p.R500R 0.25 TCGA-FW-A3R5-06 4 6064119 6064119 C T JAKMIP1 Missense_Mutation p.E494K 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-FW-A3R5-06 4 6081974 6081974 C T JAKMIP1 Silent p.T389T 0.22 TCGA-FW-A3R5-06 4 6083359 6083359 G A JAKMIP1 Missense_Mutation p.L360F 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-FW-A3R5-06 4 6087174 6087174 C T JAKMIP1 Silent p.G269G 0.21 TCGA-FW-A3R5-06 4 6087196 6087196 C T JAKMIP1 Missense_Mutation p.R262K 0.23 tolerated(0.14) benign(0.004) TCGA-FW-A3R5-06 4 619371 619371 C T PDE6B 5'Flank 0.29 TCGA-FW-A3R5-06 4 619829 619829 C T PDE6B Silent p.V138V 0.38 TCGA-FW-A3R5-06 4 62542622 62542622 C T LPHN3 Silent p.Y116Y 0.20 TCGA-FW-A3R5-06 4 62599145 62599145 C T LPHN3 Silent p.P356P 0.15 TCGA-FW-A3R5-06 4 62758479 62758479 G A LPHN3 Missense_Mutation p.G461E 0.27 tolerated(0.15) benign(0.115) TCGA-FW-A3R5-06 4 628613 628613 G A PDE6B Missense_Mutation p.E206K 0.29 deleterious(0.02) possibly_damaging(0.641) TCGA-FW-A3R5-06 4 62903542 62903542 C T LPHN3 Nonsense_Mutation p.R1161* 0.30 TCGA-FW-A3R5-06 4 629674 629674 C T PDE6B Silent p.F209F 0.26 TCGA-FW-A3R5-06 4 6325221 6325221 G A PPP2R2C Silent p.P384P 0.16 TCGA-FW-A3R5-06 4 6374257 6374257 C T PPP2R2C Silent p.R206R 0.33 TCGA-FW-A3R5-06 4 650775 650775 G A PDE6B Missense_Mutation p.G407E 0.35 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 4 65145865 65145865 C T TECRL Silent p.K339K 0.22 TCGA-FW-A3R5-06 4 65274970 65274970 G A TECRL Missense_Mutation p.H34Y 0.29 tolerated_low_confidence(0.36) benign(0.075) TCGA-FW-A3R5-06 4 652761 652761 G A PDE6B Silent p.G474G 0.15 TCGA-FW-A3R5-06 4 654295 654295 G A PDE6B Missense_Mutation p.E503K 0.15 tolerated(0.21) benign(0.368) TCGA-FW-A3R5-06 4 6695749 6695749 G A S100P Silent p.K30K 0.34 TCGA-FW-A3R5-06 4 67142634 67142634 C T MIR1269A RNA 0.14 TCGA-FW-A3R5-06 4 680390 680390 G A MFSD7 Silent p.Y75Y 0.23 TCGA-FW-A3R5-06 4 68424460 68424460 C T STAP1 5'UTR 0.17 TCGA-FW-A3R5-06 4 68424481 68424481 C T STAP1 5'UTR 0.28 TCGA-FW-A3R5-06 4 68424575 68424575 G A STAP1 Silent p.Q16Q 0.29 TCGA-FW-A3R5-06 4 68424640 68424640 G A STAP1 Missense_Mutation p.G38E 0.28 tolerated(1) benign(0) TCGA-FW-A3R5-06 4 68610308 68610308 C T GNRHR Silent p.R240R 0.17 TCGA-FW-A3R5-06 4 6862869 6862869 G A KIAA0232 Missense_Mutation p.E254K 0.14 deleterious(0.02) benign(0.124) TCGA-FW-A3R5-06 4 68688074 68688074 C T TMPRSS11D Missense_Mutation p.R413K 0.05 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 4 68699036 68699036 G A TMPRSS11D Missense_Mutation p.A193V 0.24 tolerated(0.38) possibly_damaging(0.492) TCGA-FW-A3R5-06 4 68777148 68777148 C T TMPRSS11A Missense_Mutation p.G393E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 68780337 68780337 C T TMPRSS11A Missense_Mutation p.G358E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 68810254 68810254 C T TMPRSS11A Missense_Mutation p.E79K 0.28 tolerated(0.12) benign(0.131) TCGA-FW-A3R5-06 4 68810291 68810291 G A TMPRSS11A Silent p.F66F 0.32 TCGA-FW-A3R5-06 4 68812269 68812269 C T TMPRSS11A Missense_Mutation p.R11Q 0.33 tolerated(0.22) benign(0.002) TCGA-FW-A3R5-06 4 68919784 68919784 C T TMPRSS11F Missense_Mutation p.G387E 0.19 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 4 68930574 68930574 G A TMPRSS11F Missense_Mutation p.H282Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 69095033 69095033 C T TMPRSS11B Missense_Mutation p.M296I 0.31 tolerated(0.32) benign(0.045) TCGA-FW-A3R5-06 4 69095062 69095062 G A TMPRSS11B Missense_Mutation p.R287C 0.27 tolerated(0.06) benign(0.063) TCGA-FW-A3R5-06 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.21 TCGA-FW-A3R5-06 4 69107480 69107480 C T TMPRSS11B Silent p.T17T 0.43 TCGA-FW-A3R5-06 4 6925673 6925673 C T TBC1D14 Missense_Mutation p.S186F 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 69313216 69313216 C T TMPRSS11E 5'UTR 0.32 TCGA-FW-A3R5-06 4 69327560 69327560 G A TMPRSS11E Silent p.R11R 0.29 TCGA-FW-A3R5-06 4 69334630 69334630 G A TMPRSS11E Missense_Mutation p.E98K 0.17 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 4 69337234 69337234 C T TMPRSS11E Missense_Mutation p.T128I 0.26 deleterious(0.04) possibly_damaging(0.828) TCGA-FW-A3R5-06 4 69344659 69344659 C T TMPRSS11E Missense_Mutation p.P354S 0.21 tolerated(0.59) benign(0.086) TCGA-FW-A3R5-06 4 69362672 69362672 C T TMPRSS11E 3'UTR 0.25 TCGA-FW-A3R5-06 4 69416504 69416504 C T UGT2B17 Missense_Mutation p.D402N 0.27 deleterious(0.02) benign(0.411) TCGA-FW-A3R5-06 4 69416525 69416525 G A UGT2B17 Missense_Mutation p.P395S 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 69431287 69431287 C T UGT2B17 Intron 0.32 TCGA-FW-A3R5-06 4 69433848 69433848 C T UGT2B17 Missense_Mutation p.E119K 0.21 tolerated(0.54) benign(0.027) TCGA-FW-A3R5-06 4 69434189 69434189 C T UGT2B17 Nonsense_Mutation p.W5* 0.20 TCGA-FW-A3R5-06 4 69519762 69519762 C T UGT2B15 Missense_Mutation p.D436N 0.29 tolerated(0.76) benign(0.025) TCGA-FW-A3R5-06 4 69519885 69519885 G A UGT2B15 Missense_Mutation p.P395S 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 69519925 69519925 G A UGT2B15 Silent p.I381I 0.22 TCGA-FW-A3R5-06 4 69535765 69535765 G A UGT2B15 Missense_Mutation p.P191L 0.19 deleterious(0.01) possibly_damaging(0.651) TCGA-FW-A3R5-06 4 69535791 69535791 C T UGT2B15 Silent p.E182E 0.29 TCGA-FW-A3R5-06 4 69536064 69536064 C T UGT2B15 Silent p.L91L 0.28 TCGA-FW-A3R5-06 4 69536328 69536328 C T UGT2B15 Silent p.L3L 0.20 TCGA-FW-A3R5-06 4 69682029 69682029 G A UGT2B10 Missense_Mutation p.E98K 0.27 tolerated(0.2) benign(0.003) TCGA-FW-A3R5-06 4 69682041 69682041 G A UGT2B10 Missense_Mutation p.D102N 0.22 tolerated(0.35) benign(0.03) TCGA-FW-A3R5-06 4 69682301 69682301 C T UGT2B10 Silent p.F188F 0.22 TCGA-FW-A3R5-06 4 69683801 69683801 G A UGT2B10 Missense_Mutation p.R258Q 0.34 deleterious(0.03) possibly_damaging(0.474) TCGA-FW-A3R5-06 4 69683824 69683824 C T UGT2B10 Missense_Mutation p.P266S 0.27 deleterious(0.02) probably_damaging(0.913) TCGA-FW-A3R5-06 4 69795500 69795500 C T UGT2A3 3'UTR 0.18 TCGA-FW-A3R5-06 4 69796941 69796941 C T UGT2A3 Missense_Mutation p.G339E 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 4 69798419 69798419 C T UGT2A3 Missense_Mutation p.G308E 0.19 deleterious(0.02) possibly_damaging(0.711) TCGA-FW-A3R5-06 4 69816835 69816835 G A UGT2A3 Missense_Mutation p.S215L 0.16 tolerated(0.39) benign(0.049) TCGA-FW-A3R5-06 4 69816910 69816910 G A UGT2A3 Missense_Mutation p.S190F 0.29 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 4 69817226 69817226 C T UGT2A3 Missense_Mutation p.E85K 0.24 tolerated(0.4) benign(0.004) TCGA-FW-A3R5-06 4 69817442 69817442 G A UGT2A3 Silent p.L13L 0.23 TCGA-FW-A3R5-06 4 69817489 69817489 C T UGT2A3 5'UTR 0.31 TCGA-FW-A3R5-06 4 69962862 69962862 G A UGT2B7 Missense_Mutation p.M208I 0.22 tolerated(0.13) benign(0.018) TCGA-FW-A3R5-06 4 69972933 69972933 G A UGT2B7 Missense_Mutation p.G348D 0.20 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 4 70079799 70079799 C T UGT2B11 Missense_Mutation p.M214I 0.27 tolerated(0.14) benign(0.007) TCGA-FW-A3R5-06 4 70079869 70079869 G A UGT2B11 Missense_Mutation p.P191L 0.10 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 4 70080324 70080324 C T UGT2B11 Missense_Mutation p.M39I 0.27 tolerated(0.84) benign(0.006) TCGA-FW-A3R5-06 4 7012458 7012458 C T TBC1D14 Missense_Mutation p.L533F 0.28 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 4 70156430 70156430 C T UGT2B28 Missense_Mutation p.A404V 0.18 tolerated(0.24) benign(0.02) TCGA-FW-A3R5-06 4 7026910 7026910 C T TBC1D14 Missense_Mutation p.P646L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 70346365 70346365 C T UGT2B4 Missense_Mutation p.G525E 0.30 tolerated(0.66) benign(0.004) TCGA-FW-A3R5-06 4 70355236 70355236 G A UGT2B4 Missense_Mutation p.S308F 0.27 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 70455136 70455136 G A UGT2A1 Missense_Mutation p.S679F 0.26 tolerated(0.06) benign(0.008) TCGA-FW-A3R5-06 4 70505136 70505136 C T UGT2A2 Missense_Mutation p.D75N 0.33 tolerated(0.28) benign(0.001) TCGA-FW-A3R5-06 4 70620411 70620411 G A SULT1B1 Missense_Mutation p.T85I 0.26 tolerated(0.62) benign(0.083) TCGA-FW-A3R5-06 4 70713498 70713498 G A SULT1E1 Missense_Mutation p.S170F 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 70721023 70721023 C T SULT1E1 Missense_Mutation p.M89I 0.19 tolerated(0.56) benign(0.001) TCGA-FW-A3R5-06 4 70798305 70798305 C T CSN1S1 Missense_Mutation p.A11V 0.23 deleterious(0.02) possibly_damaging(0.866) TCGA-FW-A3R5-06 4 70810643 70810643 C T CSN1S1 Missense_Mutation p.P160S 0.27 tolerated(0.54) probably_damaging(0.932) TCGA-FW-A3R5-06 4 70810661 70810661 G A CSN1S1 Missense_Mutation p.D166N 0.06 tolerated(0.16) probably_damaging(0.913) TCGA-FW-A3R5-06 4 70823435 70823435 G A CSN2 Missense_Mutation p.P78S 0.21 tolerated(0.08) possibly_damaging(0.857) TCGA-FW-A3R5-06 4 70898956 70898956 G A HTN3 3'UTR 0.27 TCGA-FW-A3R5-06 4 71063012 71063012 G A ODAM Missense_Mutation p.G39S 0.21 deleterious(0.03) benign(0.105) TCGA-FW-A3R5-06 4 71063013 71063013 G A ODAM Missense_Mutation p.G39D 0.21 deleterious(0) benign(0.42) TCGA-FW-A3R5-06 4 71068536 71068536 G A ODAM Missense_Mutation p.G238R 0.23 deleterious(0.02) benign(0.441) TCGA-FW-A3R5-06 4 71201257 71201257 G A CABS1 Silent p.K167K 0.24 TCGA-FW-A3R5-06 4 71232763 71232763 C T SMR3A 3'UTR 0.34 TCGA-FW-A3R5-06 4 71232812 71232812 C T SMR3A 3'UTR 0.21 TCGA-FW-A3R5-06 4 71255522 71255522 C T SMR3B Missense_Mutation p.P66L 0.28 unknown(0) TCGA-FW-A3R5-06 4 71255649 71255649 C T SMR3B 3'UTR 0.25 TCGA-FW-A3R5-06 4 71265027 71265027 C T PROL1 Silent p.L9L 0.08 TCGA-FW-A3R5-06 4 71275274 71275274 C T PROL1 Nonsense_Mutation p.R77* 0.27 TCGA-FW-A3R5-06 4 71275341 71275341 T A PROL1 Missense_Mutation p.F99Y 0.27 deleterious_low_confidence(0) benign(0.294) TCGA-FW-A3R5-06 4 71275758 71275758 G A PROL1 Missense_Mutation p.S238N 0.27 tolerated_low_confidence(0.45) unknown(0) TCGA-FW-A3R5-06 4 71388496 71388496 C T AMTN Missense_Mutation p.P27S 0.23 tolerated(0.14) benign(0.027) TCGA-FW-A3R5-06 4 71389609 71389609 C T AMTN Missense_Mutation p.P55S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 4 71396858 71396858 C T AMTN Missense_Mutation p.P154S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 4 71465309 71465309 C T AMBN Silent p.L80L 0.30 TCGA-FW-A3R5-06 4 71469630 71469630 G A AMBN Missense_Mutation p.E264K 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 71471960 71471960 G A AMBN Missense_Mutation p.R286K 0.23 tolerated(0.34) benign(0.194) TCGA-FW-A3R5-06 4 71472148 71472148 C T AMBN Missense_Mutation p.P349S 0.12 tolerated(0.17) benign(0.05) TCGA-FW-A3R5-06 4 71509082 71509082 G A ENAM Missense_Mutation p.E647K 0.28 tolerated(0.11) benign(0.065) TCGA-FW-A3R5-06 4 71509295 71509295 G A ENAM Missense_Mutation p.E718K 0.34 tolerated(0.1) possibly_damaging(0.841) TCGA-FW-A3R5-06 4 71509476 71509476 G A ENAM Missense_Mutation p.R778K 0.25 tolerated(0.2) benign(0.019) TCGA-FW-A3R5-06 4 71509611 71509611 G A ENAM Nonsense_Mutation p.W823* 0.23 TCGA-FW-A3R5-06 4 71510219 71510219 G A ENAM Missense_Mutation p.E1026K 0.18 tolerated(0.15) benign(0.105) TCGA-FW-A3R5-06 4 71510360 71510360 C T ENAM Missense_Mutation p.P1073S 0.17 deleterious(0.02) possibly_damaging(0.897) TCGA-FW-A3R5-06 4 71527857 71527857 G A IGJ Missense_Mutation p.S47F 0.15 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 4 71532205 71532205 C T IGJ Translation_Start_Site p.M1? 0.35 tolerated(0.06) benign(0.022) TCGA-FW-A3R5-06 4 71859507 71859507 C T DCK 5'UTR 0.28 TCGA-FW-A3R5-06 4 72338444 72338444 C T SLC4A4 Missense_Mutation p.R554C 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 4 72399970 72399970 C T SLC4A4 Silent p.F769F 0.29 TCGA-FW-A3R5-06 4 73013021 73013021 C T NPFFR2 Missense_Mutation p.P354L 0.30 deleterious(0.02) possibly_damaging(0.898) TCGA-FW-A3R5-06 4 73013235 73013235 C T NPFFR2 Silent p.F425F 0.29 TCGA-FW-A3R5-06 4 73013479 73013479 G A NPFFR2 Missense_Mutation p.E507K 0.28 deleterious_low_confidence(0.01) benign(0.017) TCGA-FW-A3R5-06 4 73149058 73149058 C T ADAMTS3 Missense_Mutation p.G1138E 0.34 tolerated_low_confidence(0.36) benign(0.002) TCGA-FW-A3R5-06 4 73161477 73161477 G A ADAMTS3 Missense_Mutation p.R873C 0.24 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 4 73179425 73179425 G A ADAMTS3 Missense_Mutation p.R572C 0.23 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 73280619 73280619 C T ADAMTS3 Missense_Mutation p.E192K 0.29 deleterious(0.03) benign(0.13) TCGA-FW-A3R5-06 4 73957010 73957010 G A ANKRD17 Missense_Mutation p.P2112L 0.34 benign(0.002) TCGA-FW-A3R5-06 4 73964105 73964105 C T ANKRD17 Missense_Mutation p.R1569K 0.28 benign(0.013) TCGA-FW-A3R5-06 4 74274418 74274418 C T ALB Silent p.F126F 0.36 TCGA-FW-A3R5-06 4 74285296 74285296 C T ALB Silent p.F575F 0.28 TCGA-FW-A3R5-06 4 74308080 74308080 C T AFP Missense_Mutation p.R184C 0.17 deleterious(0.03) probably_damaging(0.912) TCGA-FW-A3R5-06 4 74354374 74354374 C T AFM Silent p.F247F 0.19 TCGA-FW-A3R5-06 4 74357718 74357718 G A AFM Missense_Mutation p.D325N 0.27 tolerated(0.42) benign(0.109) TCGA-FW-A3R5-06 4 74365888 74365888 C T AFM Silent p.T530T 0.11 TCGA-FW-A3R5-06 4 74477528 74477528 G A RASSF6 Silent p.L27L 0.31 TCGA-FW-A3R5-06 4 74846987 74846987 C T PF4 Silent p.R80R 0.25 TCGA-FW-A3R5-06 4 74863807 74863807 G A CXCL5 Missense_Mutation p.S83F 0.24 deleterious(0.01) benign(0.412) TCGA-FW-A3R5-06 4 75065508 75065508 C T MTHFD2L Intron 0.21 TCGA-FW-A3R5-06 4 75167517 75167517 C T MTHFD2L Silent p.I345I 0.21 TCGA-FW-A3R5-06 4 75312457 75312457 G A AREG Missense_Mutation p.E90K 0.30 deleterious(0.01) possibly_damaging(0.81) TCGA-FW-A3R5-06 4 75482212 75482212 G A AREGB Missense_Mutation p.E90K 0.23 deleterious(0.01) possibly_damaging(0.81) TCGA-FW-A3R5-06 4 75937790 75937790 C T PARM1 Missense_Mutation p.P67S 0.20 tolerated(0.19) benign(0.006) TCGA-FW-A3R5-06 4 76489459 76489459 C T C4orf26 Missense_Mutation p.P83S 0.25 tolerated_low_confidence(0.15) possibly_damaging(0.803) TCGA-FW-A3R5-06 4 76489530 76489530 C T C4orf26 Silent p.S106S 0.26 TCGA-FW-A3R5-06 4 76571592 76571592 C T G3BP2 Missense_Mutation p.G369E 0.27 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 4 76650013 76650013 C A USO1 Missense_Mutation p.L4I 0.14 deleterious(0.03) benign(0.296) TCGA-FW-A3R5-06 4 76695903 76695903 C T USO1 Silent p.F212F 0.27 TCGA-FW-A3R5-06 4 76787359 76787359 C T PPEF2 Missense_Mutation p.E635K 0.31 tolerated(0.37) benign(0.008) TCGA-FW-A3R5-06 4 76797772 76797772 C T PPEF2 Missense_Mutation p.E330K 0.22 tolerated(0.81) benign(0.003) TCGA-FW-A3R5-06 4 76811167 76811167 G A PPEF2 Silent p.S120S 0.26 TCGA-FW-A3R5-06 4 76812818 76812818 G A PPEF2 Missense_Mutation p.P75L 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 4 76879000 76879000 G A SDAD1 Silent p.I526I 0.30 TCGA-FW-A3R5-06 4 76924824 76924824 C T CXCL9 Missense_Mutation p.G102E 0.17 tolerated(0.85) unknown(0) TCGA-FW-A3R5-06 4 76943088 76943088 G A CXCL10 Missense_Mutation p.P98S 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 76956249 76956249 C T CXCL11 Missense_Mutation p.G71E 0.28 tolerated(0.15) probably_damaging(0.976) TCGA-FW-A3R5-06 4 7698957 7698957 G A SORCS2 Missense_Mutation p.E542K 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 4 77003470 77003470 C T ART3 Missense_Mutation p.S188L 0.37 tolerated(0.17) benign(0.168) TCGA-FW-A3R5-06 4 77055431 77055431 G A NUP54 Nonsense_Mutation p.R203* 0.10 TCGA-FW-A3R5-06 4 77134763 77134763 G A SCARB2 5'UTR 0.27 TCGA-FW-A3R5-06 4 7714547 7714547 G A SORCS2 Silent p.E652E 0.34 TCGA-FW-A3R5-06 4 77227995 77227995 G A FAM47E-STBD1 Missense_Mutation p.G25S 0.10 tolerated(0.11) benign(0.04) TCGA-FW-A3R5-06 4 77283313 77283313 C T CCDC158 Silent p.V662V 0.26 TCGA-FW-A3R5-06 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.31 tolerated(0.16) probably_damaging(0.975) TCGA-FW-A3R5-06 4 77290750 77290750 C T CCDC158 Silent p.E392E 0.18 TCGA-FW-A3R5-06 4 77476765 77476765 G A SHROOM3 Missense_Mutation p.E58K 0.25 deleterious(0.05) benign(0.099) TCGA-FW-A3R5-06 4 77631416 77631416 G A SHROOM3 Missense_Mutation p.G144E 0.26 deleterious(0.02) possibly_damaging(0.567) TCGA-FW-A3R5-06 4 77660591 77660591 C T SHROOM3 Missense_Mutation p.S422F 0.29 deleterious(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 4 77660736 77660736 A T SHROOM3 Silent p.V470V 0.27 TCGA-FW-A3R5-06 4 77661269 77661269 G A SHROOM3 Missense_Mutation p.G648D 0.30 tolerated(0.06) benign(0.231) TCGA-FW-A3R5-06 4 77661734 77661734 C T SHROOM3 Missense_Mutation p.S803F 0.24 tolerated(0.56) benign(0.044) TCGA-FW-A3R5-06 4 77662013 77662013 G A SHROOM3 Missense_Mutation p.S896N 0.33 tolerated(0.31) benign(0.021) TCGA-FW-A3R5-06 4 77662359 77662359 G A SHROOM3 Silent p.L1011L 0.27 TCGA-FW-A3R5-06 4 77662426 77662426 G A SHROOM3 Missense_Mutation p.E1034K 0.16 deleterious(0.02) possibly_damaging(0.673) TCGA-FW-A3R5-06 4 77677753 77677753 C T SHROOM3 Missense_Mutation p.H1621Y 0.34 tolerated(0.08) benign(0.001) TCGA-FW-A3R5-06 4 77677851 77677851 G A SHROOM3 Silent p.K1653K 0.22 TCGA-FW-A3R5-06 4 77691833 77691833 G A SHROOM3 Missense_Mutation p.G1802R 0.24 tolerated(0.73) possibly_damaging(0.728) TCGA-FW-A3R5-06 4 77691837 77691837 G A SHROOM3 Missense_Mutation p.S1803N 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-FW-A3R5-06 4 7770734 7770734 G A AFAP1 Missense_Mutation p.S752F 0.23 deleterious(0) probably_damaging(0.945) TCGA-FW-A3R5-06 4 77816807 77816807 G A SOWAHB Silent p.F732F 0.31 TCGA-FW-A3R5-06 4 7802241 7802241 G A AFAP1 Silent p.I398I 0.37 TCGA-FW-A3R5-06 4 7811414 7811414 G A AFAP1 Silent p.I327I 0.34 TCGA-FW-A3R5-06 4 78532228 78532228 C T CXCL13 3'UTR 0.58 TCGA-FW-A3R5-06 4 78641627 78641627 G A CNOT6L Silent p.L542L 0.17 TCGA-FW-A3R5-06 4 78873665 78873665 C T MRPL1 Silent p.F294F 0.28 TCGA-FW-A3R5-06 4 79240035 79240035 G A FRAS1 Missense_Mutation p.E678K 0.35 benign(0.097) TCGA-FW-A3R5-06 4 79343107 79343107 C T FRAS1 Missense_Mutation p.P1544L 0.29 probably_damaging(0.987) TCGA-FW-A3R5-06 4 79343150 79343150 C T FRAS1 Silent p.F1558F 0.29 TCGA-FW-A3R5-06 4 79351478 79351478 G A FRAS1 Missense_Mutation p.A1626T 0.27 benign(0.012) TCGA-FW-A3R5-06 4 79385646 79385646 C T FRAS1 Missense_Mutation p.P2313L 0.13 possibly_damaging(0.901) TCGA-FW-A3R5-06 4 79387439 79387439 C T FRAS1 Silent p.F2369F 0.27 TCGA-FW-A3R5-06 4 79399020 79399020 G A FRAS1 Missense_Mutation p.D2635N 0.33 probably_damaging(0.981) TCGA-FW-A3R5-06 4 79399106 79399106 G A FRAS1 Silent p.A2663A 0.17 TCGA-FW-A3R5-06 4 79418033 79418033 C T FRAS1 Silent p.G3011G 0.21 TCGA-FW-A3R5-06 4 79429947 79429947 C T FRAS1 Silent p.S3189S 0.28 TCGA-FW-A3R5-06 4 79429952 79429952 C T FRAS1 Missense_Mutation p.S3191F 0.13 probably_damaging(0.999) TCGA-FW-A3R5-06 4 79440571 79440571 C T FRAS1 Silent p.A3492A 0.28 TCGA-FW-A3R5-06 4 79440623 79440623 C T FRAS1 Missense_Mutation p.L3510F 0.34 probably_damaging(0.987) TCGA-FW-A3R5-06 4 79458278 79458278 G A FRAS1 Missense_Mutation p.G3741E 0.38 probably_damaging(1) TCGA-FW-A3R5-06 4 79461839 79461839 C T FRAS1 Missense_Mutation p.S3867F 0.21 probably_damaging(0.984) TCGA-FW-A3R5-06 4 79507429 79507429 G A ANXA3 Missense_Mutation p.E110K 0.22 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 4 79860400 79860400 C T PAQR3 5'UTR 0.18 TCGA-FW-A3R5-06 4 8009922 8009922 C T ABLIM2 Silent p.K494K 0.17 TCGA-FW-A3R5-06 4 80328076 80328076 C T GK2 Missense_Mutation p.G427R 0.12 deleterious(0.02) benign(0.301) TCGA-FW-A3R5-06 4 80328333 80328333 G A GK2 Missense_Mutation p.T341I 0.28 deleterious(0.04) possibly_damaging(0.58) TCGA-FW-A3R5-06 4 80899252 80899252 G A ANTXR2 Missense_Mutation p.P419L 0.30 deleterious(0.03) possibly_damaging(0.656) TCGA-FW-A3R5-06 4 81122553 81122553 G A PRDM8 Missense_Mutation p.G110E 0.24 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 4 81123333 81123333 C T PRDM8 Silent p.P239P 0.35 TCGA-FW-A3R5-06 4 81207505 81207505 C T FGF5 Silent p.F162F 0.16 TCGA-FW-A3R5-06 4 82027083 82027083 G A PRKG2 Silent p.P649P 0.30 TCGA-FW-A3R5-06 4 8207323 8207323 G A SH3TC1 Intron 0.22 TCGA-FW-A3R5-06 4 8214429 8214429 C T SH3TC1 Silent p.D83D 0.41 TCGA-FW-A3R5-06 4 8305930 8305930 G A HTRA3 Missense_Mutation p.A374T 0.25 tolerated(0.57) benign(0.001) TCGA-FW-A3R5-06 4 8307825 8307825 G A HTRA3 Missense_Mutation p.D442N 0.17 tolerated(0.11) benign(0.378) TCGA-FW-A3R5-06 4 83582002 83582002 C T SCD5 Intron 0.19 TCGA-FW-A3R5-06 4 83905984 83905984 G A LIN54 Missense_Mutation p.P5L 0.16 deleterious_low_confidence(0.02) benign(0.075) TCGA-FW-A3R5-06 4 84243513 84243513 G A HPSE Missense_Mutation p.P78S 0.36 tolerated(0.22) benign(0.006) TCGA-FW-A3R5-06 4 84255861 84255861 G A HPSE Silent p.S25S 0.56 TCGA-FW-A3R5-06 4 84337894 84337894 G A HELQ Missense_Mutation p.S1063L 0.06 deleterious(0.02) benign(0.097) TCGA-FW-A3R5-06 4 84519293 84519293 C T AGPAT9 Silent p.I362I 0.29 TCGA-FW-A3R5-06 4 8477783 8477783 C T TRMT44 3'UTR 0.22 TCGA-FW-A3R5-06 4 85419214 85419214 G A NKX6-1 Silent p.S56S 0.50 TCGA-FW-A3R5-06 4 85525463 85525463 C T CDS1 Missense_Mutation p.P62L 0.33 deleterious(0.01) benign(0.016) TCGA-FW-A3R5-06 4 85530629 85530629 C T CDS1 Missense_Mutation p.S98L 0.33 tolerated(0.58) benign(0.021) TCGA-FW-A3R5-06 4 85540643 85540643 C T CDS1 Silent p.L179L 0.16 TCGA-FW-A3R5-06 4 85566375 85566375 G A CDS1 Missense_Mutation p.D385N 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 4 85569896 85569896 G A CDS1 3'UTR 0.31 TCGA-FW-A3R5-06 4 85696067 85696067 G A WDFY3 Nonsense_Mutation p.R1554* 0.33 TCGA-FW-A3R5-06 4 85710914 85710914 G A WDFY3 Missense_Mutation p.L1212F 0.25 deleterious(0.01) probably_damaging(0.923) TCGA-FW-A3R5-06 4 85711043 85711043 C T WDFY3 Missense_Mutation p.E1169K 0.24 tolerated(0.12) benign(0.382) TCGA-FW-A3R5-06 4 85715876 85715876 G A WDFY3 Missense_Mutation p.P1095S 0.29 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 4 8583216 8583216 C T GPR78 Silent p.F169F 0.33 TCGA-FW-A3R5-06 4 858969 858969 C T GAK Missense_Mutation p.G1036E 0.39 deleterious(0) possibly_damaging(0.883) TCGA-FW-A3R5-06 4 8602842 8602842 C T CPZ Intron 0.15 TCGA-FW-A3R5-06 4 8602908 8602908 C T CPZ Silent p.T60T 0.28 TCGA-FW-A3R5-06 4 8608525 8608525 G A CPZ Missense_Mutation p.R323Q 0.32 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 4 8621299 8621299 C T CPZ Silent p.F638F 0.22 TCGA-FW-A3R5-06 4 86491725 86491725 C T ARHGAP24 Missense_Mutation p.P11S 0.25 tolerated(0.06) benign(0.027) TCGA-FW-A3R5-06 4 86938368 86938368 G A MAPK10 3'UTR 0.24 TCGA-FW-A3R5-06 4 87080462 87080462 C T MAPK10 Silent p.Q75Q 0.23 TCGA-FW-A3R5-06 4 87556463 87556463 G A PTPN13 Silent p.E18E 0.35 TCGA-FW-A3R5-06 4 87718078 87718078 G A PTPN13 Missense_Mutation p.E2138K 0.42 tolerated(0.3) benign(0.018) TCGA-FW-A3R5-06 4 87724972 87724972 G A PTPN13 Missense_Mutation p.G2211S 0.06 deleterious(0.01) probably_damaging(0.943) TCGA-FW-A3R5-06 4 87730951 87730951 G A PTPN13 Silent p.L2376L 0.30 TCGA-FW-A3R5-06 4 87735635 87735635 C T PTPN13 Silent p.V2468V 0.11 TCGA-FW-A3R5-06 4 87744939 87744939 C T SLC10A6 Missense_Mutation p.E346K 0.32 tolerated(0.18) benign(0.251) TCGA-FW-A3R5-06 4 88106515 88106515 G A KLHL8 Missense_Mutation p.S218F 0.10 deleterious(0) benign(0.356) TCGA-FW-A3R5-06 4 88235022 88235022 G A HSD17B13 Silent p.L216L 0.34 TCGA-FW-A3R5-06 4 88243952 88243952 G A HSD17B13 Silent p.I14I 0.29 TCGA-FW-A3R5-06 4 88415108 88415108 A T SPARCL1 Missense_Mutation p.S282T 0.27 tolerated(0.07) possibly_damaging(0.713) TCGA-FW-A3R5-06 4 88415537 88415537 C T SPARCL1 Missense_Mutation p.D139N 0.30 deleterious(0.04) benign(0.172) TCGA-FW-A3R5-06 4 88534406 88534406 A T DSPP Missense_Mutation p.E356D 0.29 benign(0.168) TCGA-FW-A3R5-06 4 88583472 88583472 G A DMP1 Missense_Mutation p.G181D 0.26 tolerated(0.07) possibly_damaging(0.633) TCGA-FW-A3R5-06 4 88583862 88583862 G A DMP1 Missense_Mutation p.R311K 0.09 deleterious(0.04) benign(0.308) TCGA-FW-A3R5-06 4 88583945 88583945 G A DMP1 Missense_Mutation p.E339K 0.12 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 4 88584064 88584064 G A DMP1 Silent p.Q378Q 0.23 TCGA-FW-A3R5-06 4 88584281 88584281 G A DMP1 Missense_Mutation p.E451K 0.11 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 4 88584297 88584297 C T DMP1 Missense_Mutation p.S456F 0.21 tolerated(0.13) unknown(0) TCGA-FW-A3R5-06 4 88732726 88732726 C T IBSP Silent p.V206V 0.26 TCGA-FW-A3R5-06 4 88767368 88767368 G A MEPE Missense_Mutation p.E450K 0.18 tolerated(0.16) benign(0.027) TCGA-FW-A3R5-06 4 88903860 88903860 G A SPP1 Missense_Mutation p.E253K 0.22 tolerated(0.19) benign(0.038) TCGA-FW-A3R5-06 4 89036161 89036161 G A ABCG2 Silent p.I297I 0.17 TCGA-FW-A3R5-06 4 89052351 89052351 C T ABCG2 Missense_Mutation p.M131I 0.16 deleterious(0.04) benign(0.271) TCGA-FW-A3R5-06 4 89199393 89199393 G A PPM1K Nonsense_Mutation p.Q115* 0.47 TCGA-FW-A3R5-06 4 89304376 89304376 C T HERC6 Missense_Mutation p.P68L 0.19 tolerated(0.66) benign(0.075) TCGA-FW-A3R5-06 4 89574082 89574082 C T HERC3 Missense_Mutation p.P176S 0.27 tolerated(0.48) benign(0.024) TCGA-FW-A3R5-06 4 89618461 89618461 C T NAP1L5 Missense_Mutation p.E149K 0.29 tolerated(0.36) unknown(0) TCGA-FW-A3R5-06 4 89653337 89653337 C T FAM13A Missense_Mutation p.G887R 0.32 deleterious(0) benign(0.285) TCGA-FW-A3R5-06 4 89671018 89671018 C T FAM13A Silent p.E661E 0.30 TCGA-FW-A3R5-06 4 89671687 89671687 C T FAM13A Missense_Mutation p.E610K 0.24 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 4 89827573 89827573 C T FAM13A Missense_Mutation p.R267K 0.29 tolerated(1) benign(0) TCGA-FW-A3R5-06 4 89978145 89978145 G A FAM13A 5'UTR 0.21 TCGA-FW-A3R5-06 4 90035004 90035004 C T TIGD2 Silent p.F293F 0.29 TCGA-FW-A3R5-06 4 90168818 90168818 G A GPRIN3 3'UTR 0.27 TCGA-FW-A3R5-06 4 90168927 90168927 C T GPRIN3 3'UTR 0.23 TCGA-FW-A3R5-06 4 90169293 90169293 C T GPRIN3 Missense_Mutation p.G657R 0.20 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 4 90169374 90169374 C T GPRIN3 Missense_Mutation p.A630T 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 4 90170278 90170278 G A GPRIN3 Silent p.V328V 0.30 TCGA-FW-A3R5-06 4 90170573 90170573 G A GPRIN3 Missense_Mutation p.S230F 0.29 deleterious(0.01) possibly_damaging(0.695) TCGA-FW-A3R5-06 4 90816375 90816375 C T MMRN1 Missense_Mutation p.P85S 0.28 tolerated_low_confidence(0.16) benign(0.031) TCGA-FW-A3R5-06 4 90857667 90857667 C T MMRN1 Missense_Mutation p.P946S 0.26 tolerated(0.08) benign(0.111) TCGA-FW-A3R5-06 4 90872781 90872781 T A MMRN1 Missense_Mutation p.H1048Q 0.25 tolerated(0.08) benign(0.049) TCGA-FW-A3R5-06 4 91234063 91234063 G A CCSER1 Silent p.R458R 0.30 TCGA-FW-A3R5-06 4 91389464 91389464 G A CCSER1 Missense_Mutation p.M561I 0.27 tolerated(0.5) benign(0.002) TCGA-FW-A3R5-06 4 91549184 91549184 C T CCSER1 Missense_Mutation p.S578F 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 4 93225885 93225885 C T GRID2 Silent p.I26I 0.26 TCGA-FW-A3R5-06 4 94032040 94032040 G A GRID2 Missense_Mutation p.R224Q 0.27 tolerated(0.12) benign(0.317) TCGA-FW-A3R5-06 4 94032059 94032059 G A GRID2 Silent p.A230A 0.20 TCGA-FW-A3R5-06 4 94137937 94137937 A G GRID2 Missense_Mutation p.R280G 0.19 deleterious(0.02) probably_damaging(0.911) TCGA-FW-A3R5-06 4 94145923 94145923 G A GRID2 Silent p.K374K 0.27 TCGA-FW-A3R5-06 4 94316839 94316839 C T GRID2 Silent p.L443L 0.30 TCGA-FW-A3R5-06 4 94376979 94376979 C T GRID2 Missense_Mutation p.A571V 0.31 tolerated(0.16) probably_damaging(0.987) TCGA-FW-A3R5-06 4 94377063 94377063 C T GRID2 Missense_Mutation p.S599L 0.17 deleterious(0.04) benign(0.412) TCGA-FW-A3R5-06 4 946159 946159 C T TMEM175 Missense_Mutation p.S128L 0.16 tolerated(0.12) benign(0.418) TCGA-FW-A3R5-06 4 94693284 94693284 G A GRID2 Missense_Mutation p.D887N 0.32 deleterious_low_confidence(0.03) benign(0.423) TCGA-FW-A3R5-06 4 94693326 94693326 G A GRID2 Missense_Mutation p.D901N 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-FW-A3R5-06 4 95129503 95129503 C T SMARCAD1 5'UTR 0.34 TCGA-FW-A3R5-06 4 95147382 95147382 C T SMARCAD1 Silent p.V101V 0.34 TCGA-FW-A3R5-06 4 95174054 95174054 C T SMARCAD1 Missense_Mutation p.L393F 0.11 tolerated(0.69) benign(0.149) TCGA-FW-A3R5-06 4 95194801 95194801 C T SMARCAD1 Silent p.L536L 0.34 TCGA-FW-A3R5-06 4 95220653 95220653 C T HPGDS Missense_Mutation p.R193Q 0.38 tolerated(0.48) benign(0.001) TCGA-FW-A3R5-06 4 95496819 95496819 C T PDLIM5 Intron 0.27 TCGA-FW-A3R5-06 4 96104083 96104083 C T UNC5C Missense_Mutation p.G806R 0.27 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 4 96123893 96123893 C T UNC5C Missense_Mutation p.D709N 0.48 tolerated(0.07) possibly_damaging(0.552) TCGA-FW-A3R5-06 4 96137224 96137224 C T UNC5C Intron 0.17 TCGA-FW-A3R5-06 4 96163655 96163655 G A UNC5C Missense_Mutation p.P345S 0.31 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 4 96163702 96163702 C T UNC5C Missense_Mutation p.G329E 0.28 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 4 96761266 96761266 G A PDHA2 5'UTR 0.27 TCGA-FW-A3R5-06 4 96761857 96761857 G A PDHA2 Missense_Mutation p.E186K 0.28 tolerated(0.51) benign(0.044) TCGA-FW-A3R5-06 4 9784037 9784037 C T DRD5 Silent p.I128I 0.12 TCGA-FW-A3R5-06 4 9784321 9784321 G A DRD5 Missense_Mutation p.R223Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 4 9784541 9784541 G A DRD5 Silent p.K296K 0.11 TCGA-FW-A3R5-06 4 9784685 9784685 C T DRD5 Silent p.F344F 0.11 TCGA-FW-A3R5-06 4 9784959 9784959 C T DRD5 Missense_Mutation p.R436C 0.26 deleterious(0) possibly_damaging(0.776) TCGA-FW-A3R5-06 4 9784984 9784984 C T DRD5 Missense_Mutation p.S444F 0.34 deleterious(0.01) benign(0.413) TCGA-FW-A3R5-06 4 9784985 9784985 C T DRD5 Silent p.S444S 0.35 TCGA-FW-A3R5-06 4 9827999 9827999 C T SLC2A9 3'UTR 0.14 TCGA-FW-A3R5-06 4 99338587 99338587 C T RAP1GDS1 Missense_Mutation p.P327L 0.28 tolerated(0.27) possibly_damaging(0.879) TCGA-FW-A3R5-06 4 9943555 9943555 C T SLC2A9 Missense_Mutation p.E266K 0.38 tolerated(0.18) benign(0.06) TCGA-FW-A3R5-06 4 9998483 9998483 G A SLC2A9 Missense_Mutation p.S111F 0.38 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 5 100147828 100147828 C T ST8SIA4 Nonsense_Mutation p.W268* 0.22 TCGA-FW-A3R5-06 5 100222168 100222168 G A ST8SIA4 Silent p.L128L 0.24 TCGA-FW-A3R5-06 5 100238702 100238702 C T ST8SIA4 5'UTR 0.24 TCGA-FW-A3R5-06 5 101583015 101583015 G A SLCO4C1 Silent p.F584F 0.38 TCGA-FW-A3R5-06 5 101592853 101592853 C T SLCO4C1 Missense_Mutation p.E479K 0.30 tolerated(0.79) benign(0.099) TCGA-FW-A3R5-06 5 101593663 101593663 G A SLCO4C1 Silent p.F419F 0.10 TCGA-FW-A3R5-06 5 101748762 101748762 C T SLCO6A1 Missense_Mutation p.D520N 0.33 tolerated(0.13) possibly_damaging(0.831) TCGA-FW-A3R5-06 5 101755566 101755566 G A SLCO6A1 Missense_Mutation p.P479L 0.26 deleterious(0.01) possibly_damaging(0.718) TCGA-FW-A3R5-06 5 101813497 101813497 G A SLCO6A1 Silent p.L229L 0.19 TCGA-FW-A3R5-06 5 101834206 101834206 G A SLCO6A1 Silent p.L115L 0.30 TCGA-FW-A3R5-06 5 101834305 101834305 C T SLCO6A1 Missense_Mutation p.D82N 0.31 tolerated(0.53) benign(0.017) TCGA-FW-A3R5-06 5 101834355 101834355 C T SLCO6A1 Missense_Mutation p.R65Q 0.27 tolerated(0.69) benign(0.011) TCGA-FW-A3R5-06 5 101834534 101834534 G A SLCO6A1 Silent p.V5V 0.13 TCGA-FW-A3R5-06 5 101834543 101834543 G A SLCO6A1 Silent p.F2F 0.33 TCGA-FW-A3R5-06 5 101834693 101834693 G A SLCO6A1 5'UTR 0.29 TCGA-FW-A3R5-06 5 102309921 102309921 C T PAM Silent p.L422L 0.20 TCGA-FW-A3R5-06 5 102364827 102364827 C T PAM 3'Flank 0.35 TCGA-FW-A3R5-06 5 102440250 102440250 G A GIN1 Nonsense_Mutation p.Q212* 0.23 TCGA-FW-A3R5-06 5 102508940 102508940 C T PPIP5K2 Missense_Mutation p.L790F 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-FW-A3R5-06 5 102509599 102509599 C T PPIP5K2 Missense_Mutation p.R818C 0.17 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 5 10261701 10261701 C T CCT5 Silent p.I341I 0.24 TCGA-FW-A3R5-06 5 10290816 10290816 C T CMBL Missense_Mutation p.G20E 0.06 deleterious(0.01) possibly_damaging(0.703) TCGA-FW-A3R5-06 5 1064220 1064220 G A SLC12A7 Missense_Mutation p.P862L 0.27 deleterious(0) possibly_damaging(0.901) TCGA-FW-A3R5-06 5 1078005 1078005 C T SLC12A7 Silent p.T524T 0.19 TCGA-FW-A3R5-06 5 108523217 108523217 C T FER Missense_Mutation p.R804C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 109103252 109103252 C T MAN2A1 Silent p.S284S 0.36 TCGA-FW-A3R5-06 5 109103343 109103343 C T MAN2A1 Missense_Mutation p.H315Y 0.31 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 5 109124642 109124642 C T MAN2A1 Missense_Mutation p.H590Y 0.19 deleterious(0.01) benign(0.02) TCGA-FW-A3R5-06 5 109155434 109155434 G A MAN2A1 Missense_Mutation p.S725N 0.16 tolerated(0.42) benign(0.009) TCGA-FW-A3R5-06 5 10973801 10973801 C T CTNND2 Missense_Mutation p.E1148K 0.30 deleterious(0.01) benign(0.053) TCGA-FW-A3R5-06 5 10992758 10992758 G A CTNND2 Missense_Mutation p.S1039L 0.21 deleterious(0.01) benign(0.139) TCGA-FW-A3R5-06 5 11022970 11022970 C T CTNND2 Silent p.V970V 0.33 TCGA-FW-A3R5-06 5 110409119 110409119 T A TSLP Intron 0.39 TCGA-FW-A3R5-06 5 110409120 110409120 C T TSLP Intron 0.39 TCGA-FW-A3R5-06 5 110454763 110454763 C T WDR36 Missense_Mutation p.P673S 0.27 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 110730466 110730466 C T CAMK4 Silent p.L149L 0.43 TCGA-FW-A3R5-06 5 110809020 110809020 C T CAMK4 Missense_Mutation p.L213F 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 110819735 110819735 G A CAMK4 Silent p.K331K 0.28 TCGA-FW-A3R5-06 5 110819862 110819862 G A CAMK4 Missense_Mutation p.E374K 0.17 tolerated(0.08) benign(0.002) TCGA-FW-A3R5-06 5 110835662 110835662 C T STARD4 Missense_Mutation p.M180I 0.34 tolerated(0.12) benign(0.217) TCGA-FW-A3R5-06 5 110835726 110835726 G A STARD4 Missense_Mutation p.P159L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 110836623 110836623 G A STARD4 Intron 0.26 TCGA-FW-A3R5-06 5 110842035 110842035 C A STARD4 Nonsense_Mutation p.G50* 0.24 TCGA-FW-A3R5-06 5 111066648 111066648 G A NREP Silent p.S103S 0.15 TCGA-FW-A3R5-06 5 11117598 11117598 G A CTNND2 Silent p.I747I 0.31 TCGA-FW-A3R5-06 5 11117651 11117651 G A CTNND2 Missense_Mutation p.R730C 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 111531355 111531355 T C EPB41L4A Intron 0.24 TCGA-FW-A3R5-06 5 111540084 111540084 G A EPB41L4A Missense_Mutation p.P455L 0.30 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 5 111540184 111540184 C T EPB41L4A Missense_Mutation p.G422R 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-FW-A3R5-06 5 111570421 111570421 G A EPB41L4A Missense_Mutation p.L333F 0.30 tolerated(0.31) benign(0.305) TCGA-FW-A3R5-06 5 111595608 111595608 C T EPB41L4A Silent p.K237K 0.25 TCGA-FW-A3R5-06 5 111616007 111616007 G A EPB41L4A Missense_Mutation p.P73L 0.15 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 5 112162920 112162920 G C APC Missense_Mutation p.L508F 0.09 probably_damaging(0.95) TCGA-FW-A3R5-06 5 112227676 112227676 G A ZRSR1 Missense_Mutation p.E114K 0.23 deleterious(0.04) benign(0.292) TCGA-FW-A3R5-06 5 11236895 11236895 G A CTNND2 Nonsense_Mutation p.Q557* 0.29 TCGA-FW-A3R5-06 5 112384660 112384660 G A MCC Intron 0.29 TCGA-FW-A3R5-06 5 112720813 112720813 G A MCC Silent p.S89S 0.30 TCGA-FW-A3R5-06 5 112770107 112770107 G A TSSK1B Missense_Mutation p.L144F 0.43 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 5 112770152 112770152 C T TSSK1B Missense_Mutation p.D129N 0.15 deleterious(0.05) benign(0.013) TCGA-FW-A3R5-06 5 112929053 112929053 C A YTHDC2 Silent p.P1422P 0.27 TCGA-FW-A3R5-06 5 11364849 11364849 G A CTNND2 Missense_Mutation p.P444L 0.36 tolerated(0.51) benign(0.002) TCGA-FW-A3R5-06 5 11364993 11364993 C T CTNND2 Missense_Mutation p.R396Q 0.19 deleterious(0.04) possibly_damaging(0.775) TCGA-FW-A3R5-06 5 113698904 113698904 C T KCNN2 Silent p.F144F 0.17 TCGA-FW-A3R5-06 5 11384820 11384820 C T CTNND2 Silent p.E378E 0.35 TCGA-FW-A3R5-06 5 115151922 115151922 C T CDO1 Intron 0.34 TCGA-FW-A3R5-06 5 115298196 115298196 G A AQPEP 5'UTR 0.25 TCGA-FW-A3R5-06 5 115348125 115348125 C T AQPEP Missense_Mutation p.R768C 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3R5-06 5 115782979 115782979 G T SEMA6A Missense_Mutation p.S808Y 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 5 115815860 115815860 G A SEMA6A Missense_Mutation p.P403L 0.32 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 5 11732253 11732253 C T CTNND2 Missense_Mutation p.E57K 0.08 deleterious(0) possibly_damaging(0.597) TCGA-FW-A3R5-06 5 118176751 118176751 G A DTWD2 Missense_Mutation p.S253F 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 5 118456684 118456684 C T DMXL1 Missense_Mutation p.R318C 0.08 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 5 118469492 118469492 C T DMXL1 Missense_Mutation p.L625F 0.14 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3R5-06 5 118500911 118500911 C T DMXL1 Missense_Mutation p.P1636S 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 118506066 118506066 C T DMXL1 Silent p.T1860T 0.21 TCGA-FW-A3R5-06 5 118788174 118788174 C T HSD17B4 5'Flank 0.32 TCGA-FW-A3R5-06 5 118788424 118788424 C T HSD17B4 5'UTR 0.21 TCGA-FW-A3R5-06 5 118969872 118969872 G A FAM170A Nonsense_Mutation p.W143* 0.33 TCGA-FW-A3R5-06 5 118969873 118969873 G A FAM170A Missense_Mutation p.E144K 0.32 deleterious(0.05) possibly_damaging(0.851) TCGA-FW-A3R5-06 5 118969929 118969929 C T FAM170A Silent p.T162T 0.25 TCGA-FW-A3R5-06 5 120022371 120022371 G A PRR16 Silent p.T271T 0.30 TCGA-FW-A3R5-06 5 1208909 1208909 C T SLC6A19 Missense_Mutation p.P84L 0.21 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 5 121187648 121187648 G A FTMT 5'Flank 0.21 TCGA-FW-A3R5-06 5 121187759 121187759 C T FTMT Missense_Mutation p.P34L 0.38 tolerated_low_confidence(0.15) benign(0.062) TCGA-FW-A3R5-06 5 121188021 121188021 G A FTMT Silent p.E121E 0.24 TCGA-FW-A3R5-06 5 121188184 121188184 G A FTMT Missense_Mutation p.E176K 0.11 deleterious(0.02) benign(0.136) TCGA-FW-A3R5-06 5 1212541 1212541 C T SLC6A19 Missense_Mutation p.A202V 0.08 tolerated(0.89) benign(0.009) TCGA-FW-A3R5-06 5 121362886 121362886 C T SRFBP1 3'UTR 0.38 TCGA-FW-A3R5-06 5 1213673 1213673 C T SLC6A19 Silent p.F253F 0.38 TCGA-FW-A3R5-06 5 121488406 121488406 C T ZNF474 Missense_Mutation p.P241S 0.21 deleterious(0.04) possibly_damaging(0.658) TCGA-FW-A3R5-06 5 1217051 1217051 C T SLC6A19 Silent p.F388F 0.32 TCGA-FW-A3R5-06 5 121759246 121759246 G A SNCAIP Missense_Mutation p.E272K 0.25 tolerated(0.21) benign(0.297) TCGA-FW-A3R5-06 5 121759380 121759380 G A SNCAIP Silent p.L316L 0.12 TCGA-FW-A3R5-06 5 121759414 121759414 G A SNCAIP Missense_Mutation p.E328K 0.23 deleterious(0.04) probably_damaging(0.932) TCGA-FW-A3R5-06 5 121767694 121767694 G A SNCAIP Missense_Mutation p.V405M 0.15 tolerated(0.09) probably_damaging(0.974) TCGA-FW-A3R5-06 5 121785550 121785550 G A SNCAIP Missense_Mutation p.E535K 0.22 deleterious(0.03) benign(0.217) TCGA-FW-A3R5-06 5 121786416 121786416 G A SNCAIP Missense_Mutation p.G625E 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 1221818 1221818 G A SLC6A19 Silent p.E568E 0.22 TCGA-FW-A3R5-06 5 122343382 122343382 C T SNX24 Missense_Mutation p.P150S 0.32 tolerated(0.13) benign(0.004) TCGA-FW-A3R5-06 5 1235690 1235690 C T SLC6A18 Silent p.S178S 0.30 TCGA-FW-A3R5-06 5 123983508 123983508 G A ZNF608 Missense_Mutation p.H857Y 0.11 tolerated(0.11) probably_damaging(0.991) TCGA-FW-A3R5-06 5 123984630 123984630 G A ZNF608 Missense_Mutation p.P483S 0.22 tolerated(0.09) possibly_damaging(0.889) TCGA-FW-A3R5-06 5 1240646 1240646 G A SLC6A18 Silent p.R282R 0.36 TCGA-FW-A3R5-06 5 1243834 1243834 G A SLC6A18 Silent p.V432V 0.12 TCGA-FW-A3R5-06 5 1243835 1243835 G A SLC6A18 Missense_Mutation p.G433R 0.12 tolerated(0.27) benign(0.071) TCGA-FW-A3R5-06 5 1246031 1246031 C T SLC6A18 Silent p.S575S 0.36 TCGA-FW-A3R5-06 5 1246138 1246138 C T SLC6A18 Missense_Mutation p.P611L 0.33 tolerated(0.65) unknown(0) TCGA-FW-A3R5-06 5 1255475 1255475 G T TERT Missense_Mutation p.N1028K 0.12 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 5 125880576 125880576 G A ALDH7A1 3'UTR 0.22 TCGA-FW-A3R5-06 5 125919701 125919701 G A ALDH7A1 Missense_Mutation p.P106S 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-FW-A3R5-06 5 125971753 125971753 C T C5orf48 Silent p.G75G 0.14 TCGA-FW-A3R5-06 5 126676290 126676290 C A MEGF10 Missense_Mutation p.P96H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 5 126732423 126732423 C T MEGF10 Silent p.D204D 0.20 TCGA-FW-A3R5-06 5 126746129 126746129 G A MEGF10 Silent p.E322E 0.27 TCGA-FW-A3R5-06 5 126771152 126771152 C T MEGF10 Missense_Mutation p.P692L 0.12 deleterious(0) possibly_damaging(0.907) TCGA-FW-A3R5-06 5 126784913 126784913 C T MEGF10 Silent p.L993L 0.35 TCGA-FW-A3R5-06 5 1268709 1268709 G T TERT Silent p.I836I 0.23 TCGA-FW-A3R5-06 5 1268745 1268745 G A TERT Silent p.S824S 0.19 TCGA-FW-A3R5-06 5 1271266 1271266 G A TERT Silent p.F812F 0.10 TCGA-FW-A3R5-06 5 1272354 1272354 G A TERT Silent p.F776F 0.24 TCGA-FW-A3R5-06 5 127474324 127474324 C T SLC12A2 Nonsense_Mutation p.R482* 0.14 TCGA-FW-A3R5-06 5 127484521 127484521 C T SLC12A2 Missense_Mutation p.R653C 0.27 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 5 127522430 127522430 C T SLC12A2 3'UTR 0.40 TCGA-FW-A3R5-06 5 127611766 127611766 C T FBN2 Missense_Mutation p.G2520R 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 127613669 127613669 G A FBN2 Silent p.N2458N 0.23 TCGA-FW-A3R5-06 5 127622432 127622432 C T FBN2 Silent p.R2330R 0.16 TCGA-FW-A3R5-06 5 127623022 127623022 C T FBN2 Silent p.R2286R 0.24 TCGA-FW-A3R5-06 5 127638767 127638767 C T FBN2 Missense_Mutation p.E1939K 0.21 tolerated(0.13) benign(0.234) TCGA-FW-A3R5-06 5 127648455 127648455 C T FBN2 Missense_Mutation p.G1584R 0.09 tolerated(0.71) benign(0.231) TCGA-FW-A3R5-06 5 127668645 127668645 C T FBN2 Missense_Mutation p.S1394N 0.20 tolerated(0.21) benign(0.021) TCGA-FW-A3R5-06 5 127671201 127671201 C T FBN2 Missense_Mutation p.E1265K 0.30 tolerated(0.07) possibly_damaging(0.557) TCGA-FW-A3R5-06 5 127685093 127685093 G A FBN2 Missense_Mutation p.H979Y 0.38 tolerated(0.1) possibly_damaging(0.53) TCGA-FW-A3R5-06 5 127686617 127686617 C T FBN2 Missense_Mutation p.E919K 0.25 deleterious(0) possibly_damaging(0.61) TCGA-FW-A3R5-06 5 1278759 1278759 G A TERT Silent p.S761S 0.33 TCGA-FW-A3R5-06 5 128301793 128301793 G A SLC27A6 5'UTR 0.29 TCGA-FW-A3R5-06 5 128324336 128324336 G A SLC27A6 Silent p.R243R 0.29 TCGA-FW-A3R5-06 5 128324337 128324337 G A SLC27A6 Missense_Mutation p.G244S 0.29 tolerated(0.29) benign(0.07) TCGA-FW-A3R5-06 5 128362828 128362828 G A SLC27A6 Missense_Mutation p.E420K 0.30 tolerated(0.08) benign(0.262) TCGA-FW-A3R5-06 5 128362842 128362842 C T SLC27A6 Silent p.L424L 0.30 TCGA-FW-A3R5-06 5 128365332 128365332 G A SLC27A6 Missense_Mutation p.E539K 0.31 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 5 128440889 128440889 C T ISOC1 Silent p.A147A 0.16 TCGA-FW-A3R5-06 5 128797335 128797335 G A ADAMTS19 Missense_Mutation p.G205E 0.29 tolerated(0.56) benign(0.004) TCGA-FW-A3R5-06 5 128957988 128957988 G A ADAMTS19 Missense_Mutation p.E567K 0.24 deleterious(0) possibly_damaging(0.883) TCGA-FW-A3R5-06 5 128990073 128990073 G A ADAMTS19 Missense_Mutation p.G745R 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 129030435 129030435 C T ADAMTS19 Silent p.S941S 0.23 TCGA-FW-A3R5-06 5 129039953 129039953 G A ADAMTS19 Missense_Mutation p.G1055S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 129070689 129070689 G A ADAMTS19 Missense_Mutation p.G1120E 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 129070703 129070703 G A ADAMTS19 Missense_Mutation p.E1125K 0.26 tolerated(0.07) possibly_damaging(0.665) TCGA-FW-A3R5-06 5 130498346 130498346 G A HINT1 Silent p.S45S 0.17 TCGA-FW-A3R5-06 5 130797667 130797667 G A RAPGEF6 Silent p.A865A 0.26 TCGA-FW-A3R5-06 5 130883776 130883776 G A RAPGEF6 Silent p.T153T 0.22 TCGA-FW-A3R5-06 5 131308971 131308971 C T ACSL6 Silent p.R397R 0.25 TCGA-FW-A3R5-06 5 131398405 131398405 G A IL3 Missense_Mutation p.R127Q 0.25 tolerated(0.62) benign(0.425) TCGA-FW-A3R5-06 5 131411475 131411475 G A CSF2 Missense_Mutation p.S122N 0.09 tolerated(0.29) benign(0.01) TCGA-FW-A3R5-06 5 131670542 131670542 G A SLC22A4 Missense_Mutation p.R393Q 0.21 tolerated(0.3) benign(0.015) TCGA-FW-A3R5-06 5 131729429 131729429 C T SLC22A5 Silent p.I504I 0.32 TCGA-FW-A3R5-06 5 131877530 131877530 C T IL5 Missense_Mutation p.M126I 0.21 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 5 131878811 131878811 C T IL5 Missense_Mutation p.R51K 0.18 tolerated(0.52) benign(0.074) TCGA-FW-A3R5-06 5 131923622 131923622 C T RAD50 Nonsense_Mutation p.Q298* 0.31 TCGA-FW-A3R5-06 5 131924381 131924381 C T RAD50 Missense_Mutation p.R352C 0.56 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 5 131995954 131995954 C T IL13 Missense_Mutation p.R141C 0.22 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 5 132062122 132062122 G A KIF3A Missense_Mutation p.P117S 0.24 deleterious(0) benign(0.35) TCGA-FW-A3R5-06 5 132100089 132100089 G A SEPT8 Silent p.S58S 0.26 TCGA-FW-A3R5-06 5 132158506 132158506 G A SHROOM1 Silent p.F847F 0.32 TCGA-FW-A3R5-06 5 132161206 132161206 G A SHROOM1 Silent p.A209A 0.50 TCGA-FW-A3R5-06 5 132197639 132197639 G A GDF9 Missense_Mutation p.S336F 0.28 deleterious(0.01) benign(0.418) TCGA-FW-A3R5-06 5 132197785 132197785 A C GDF9 Silent p.P287P 0.31 TCGA-FW-A3R5-06 5 132199880 132199880 G A GDF9 Missense_Mutation p.L116F 0.20 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 5 132232403 132232403 G A AFF4 Missense_Mutation p.S640L 0.14 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 5 132400719 132400719 C T HSPA4 Missense_Mutation p.A52V 0.10 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 5 132534831 132534831 C T FSTL4 Missense_Mutation p.G829S 0.21 tolerated(0.1) possibly_damaging(0.902) TCGA-FW-A3R5-06 5 132560846 132560846 C T FSTL4 Silent p.K436K 0.32 TCGA-FW-A3R5-06 5 132736524 132736524 C T FSTL4 Silent p.G105G 0.13 TCGA-FW-A3R5-06 5 133634402 133634402 C T CDKL3 Splice_Site p.X574_splice 0.28 TCGA-FW-A3R5-06 5 134041097 134041097 C T SEC24A Nonsense_Mutation p.Q841* 0.12 TCGA-FW-A3R5-06 5 134229308 134229308 C T TXNDC15 Missense_Mutation p.L240F 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-FW-A3R5-06 5 134303585 134303585 C T PCBD2 3'UTR 0.25 TCGA-FW-A3R5-06 5 134343727 134343727 C T CATSPER3 Silent p.F191F 0.23 TCGA-FW-A3R5-06 5 134364788 134364788 G A PITX1 Missense_Mutation p.S209L 0.16 deleterious(0.03) possibly_damaging(0.787) TCGA-FW-A3R5-06 5 134781929 134781929 G A TIFAB 3'UTR 0.35 TCGA-FW-A3R5-06 5 134782265 134782265 C T C5orf20 Silent p.L178L 0.26 TCGA-FW-A3R5-06 5 134782660 134782660 C T C5orf20 Missense_Mutation p.E47K 0.17 tolerated_low_confidence(0.6) benign(0.012) TCGA-FW-A3R5-06 5 134785187 134785187 C T TIFAB Nonsense_Mutation p.W148* 0.29 TCGA-FW-A3R5-06 5 134785468 134785468 G A TIFAB Silent p.S54S 0.08 TCGA-FW-A3R5-06 5 134785469 134785469 G A TIFAB Missense_Mutation p.S54F 0.08 deleterious(0.03) possibly_damaging(0.556) TCGA-FW-A3R5-06 5 134870797 134870797 G A NEUROG1 Missense_Mutation p.P195L 0.13 tolerated(0.06) probably_damaging(0.95) TCGA-FW-A3R5-06 5 135273183 135273183 C T FBXL21 RNA 0.22 TCGA-FW-A3R5-06 5 135277309 135277309 C T FBXL21 RNA 0.21 TCGA-FW-A3R5-06 5 135277500 135277500 C T FBXL21 3'Flank 0.33 TCGA-FW-A3R5-06 5 135287103 135287103 G A LECT2 Intron 0.38 TCGA-FW-A3R5-06 5 135382142 135382142 C T TGFBI Silent p.T139T 0.27 TCGA-FW-A3R5-06 5 135389715 135389715 C T TGFBI Missense_Mutation p.L404F 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 5 135513139 135513139 C T SMAD5 Missense_Mutation p.P456S 0.23 deleterious(0.03) possibly_damaging(0.626) TCGA-FW-A3R5-06 5 135561028 135561028 C T TRPC7 Silent p.Q759Q 0.35 TCGA-FW-A3R5-06 5 135561040 135561040 C T TRPC7 Silent p.K755K 0.17 TCGA-FW-A3R5-06 5 135587422 135587422 C T TRPC7 Silent p.E498E 0.22 TCGA-FW-A3R5-06 5 135602022 135602022 C T TRPC7 Missense_Mutation p.E411K 0.25 tolerated(0.05) benign(0.021) TCGA-FW-A3R5-06 5 135692426 135692426 G A TRPC7 Missense_Mutation p.S217L 0.30 tolerated(0.08) possibly_damaging(0.745) TCGA-FW-A3R5-06 5 135692569 135692569 G A TRPC7 Silent p.I169I 0.27 TCGA-FW-A3R5-06 5 135693067 135693067 C T TRPC7 Silent p.R3R 0.27 TCGA-FW-A3R5-06 5 136602719 136602719 G A SPOCK1 Missense_Mutation p.P71L 0.30 deleterious(0.01) benign(0.023) TCGA-FW-A3R5-06 5 13692161 13692161 G A DNAH5 Missense_Mutation p.L4603F 0.29 possibly_damaging(0.849) TCGA-FW-A3R5-06 5 13692204 13692204 C T DNAH5 Silent p.K4588K 0.28 TCGA-FW-A3R5-06 5 136969778 136969778 C T KLHL3 Silent p.A466A 0.15 TCGA-FW-A3R5-06 5 136974658 136974658 G A KLHL3 Silent p.G401G 0.27 TCGA-FW-A3R5-06 5 13700828 13700828 C T DNAH5 Silent p.R4548R 0.31 TCGA-FW-A3R5-06 5 13701487 13701487 C T DNAH5 Missense_Mutation p.S4466N 0.17 benign(0.007) TCGA-FW-A3R5-06 5 13701506 13701506 C T DNAH5 Missense_Mutation p.E4460K 0.21 possibly_damaging(0.621) TCGA-FW-A3R5-06 5 137028077 137028077 G A KLHL3 Silent p.D141D 0.17 TCGA-FW-A3R5-06 5 13717553 13717553 G A DNAH5 Silent p.H4192H 0.25 TCGA-FW-A3R5-06 5 13719036 13719036 C T DNAH5 Missense_Mutation p.D4152N 0.24 benign(0.016) TCGA-FW-A3R5-06 5 137230282 137230282 C T PKD2L2 Missense_Mutation p.L170F 0.32 tolerated(0.41) benign(0.105) TCGA-FW-A3R5-06 5 137284808 137284808 G A FAM13B Missense_Mutation p.P644S 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 13735244 13735244 A G DNAH5 Silent p.I3919I 0.28 TCGA-FW-A3R5-06 5 13735280 13735280 C T DNAH5 Silent p.R3907R 0.08 TCGA-FW-A3R5-06 5 13735322 13735322 G A DNAH5 Silent p.F3893F 0.32 TCGA-FW-A3R5-06 5 13735969 13735969 G A DNAH5 Missense_Mutation p.S3843L 0.28 benign(0.32) TCGA-FW-A3R5-06 5 13737473 13737473 G A DNAH5 Silent p.L3781L 0.27 TCGA-FW-A3R5-06 5 137423581 137423581 G A WNT8A Missense_Mutation p.E110K 0.27 tolerated(0.06) possibly_damaging(0.782) TCGA-FW-A3R5-06 5 137427080 137427080 G A WNT8A 3'UTR 0.22 TCGA-FW-A3R5-06 5 137475722 137475722 G A BRD8 3'UTR 0.32 TCGA-FW-A3R5-06 5 13752396 13752396 G A DNAH5 Silent p.I3625I 0.25 TCGA-FW-A3R5-06 5 13753547 13753547 G A DNAH5 Missense_Mutation p.P3556L 0.27 possibly_damaging(0.713) TCGA-FW-A3R5-06 5 137600082 137600082 G A GFRA3 Missense_Mutation p.P83S 0.30 tolerated(0.21) benign(0.038) TCGA-FW-A3R5-06 5 137627780 137627780 G A CDC25C Missense_Mutation p.S214F 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-FW-A3R5-06 5 13762864 13762864 G A DNAH5 Silent p.F3416F 0.24 TCGA-FW-A3R5-06 5 13766107 13766107 C T DNAH5 Missense_Mutation p.G3360E 0.13 probably_damaging(0.982) TCGA-FW-A3R5-06 5 137665307 137665307 G A CDC25C Missense_Mutation p.S75L 0.28 deleterious(0.02) possibly_damaging(0.808) TCGA-FW-A3R5-06 5 13769225 13769225 C T DNAH5 Missense_Mutation p.M3247I 0.29 benign(0.072) TCGA-FW-A3R5-06 5 13769648 13769648 C T DNAH5 Missense_Mutation p.E3228K 0.30 possibly_damaging(0.621) TCGA-FW-A3R5-06 5 13770902 13770902 G A DNAH5 Silent p.F3187F 0.29 TCGA-FW-A3R5-06 5 137727218 137727218 C T KDM3B Missense_Mutation p.P633S 0.16 tolerated_low_confidence(0.18) probably_damaging(0.996) TCGA-FW-A3R5-06 5 137727469 137727469 C T KDM3B Silent p.S716S 0.24 TCGA-FW-A3R5-06 5 137780194 137780194 C T REEP2 Silent p.F91F 0.20 TCGA-FW-A3R5-06 5 137781487 137781487 G A REEP2 3'UTR 0.25 TCGA-FW-A3R5-06 5 137781488 137781488 G A REEP2 3'UTR 0.25 TCGA-FW-A3R5-06 5 137802597 137802597 C T EGR1 Silent p.P153P 0.27 TCGA-FW-A3R5-06 5 13786434 13786434 C T DNAH5 Missense_Mutation p.E2892K 0.33 benign(0.002) TCGA-FW-A3R5-06 5 13792151 13792151 G A DNAH5 Silent p.V2800V 0.33 TCGA-FW-A3R5-06 5 13793685 13793685 C T DNAH5 Silent p.K2721K 0.29 TCGA-FW-A3R5-06 5 13793832 13793832 C T DNAH5 Silent p.T2672T 0.20 TCGA-FW-A3R5-06 5 13794063 13794063 G A DNAH5 Silent p.I2664I 0.37 TCGA-FW-A3R5-06 5 13794146 13794146 C T DNAH5 Missense_Mutation p.D2637N 0.22 possibly_damaging(0.822) TCGA-FW-A3R5-06 5 13823467 13823467 C T DNAH5 Missense_Mutation p.E2198K 0.23 benign(0.292) TCGA-FW-A3R5-06 5 13829732 13829732 G A DNAH5 Missense_Mutation p.R2111C 0.24 possibly_damaging(0.898) TCGA-FW-A3R5-06 5 13830182 13830182 C T DNAH5 Missense_Mutation p.G2068R 0.22 probably_damaging(0.988) TCGA-FW-A3R5-06 5 13830199 13830199 G A DNAH5 Missense_Mutation p.S2062F 0.20 possibly_damaging(0.788) TCGA-FW-A3R5-06 5 13830851 13830851 C T DNAH5 Missense_Mutation p.M1972I 0.28 benign(0.072) TCGA-FW-A3R5-06 5 13841080 13841080 C T DNAH5 Missense_Mutation p.E1882K 0.16 benign(0.292) TCGA-FW-A3R5-06 5 13841134 13841134 G A DNAH5 Silent p.L1864L 0.24 TCGA-FW-A3R5-06 5 13841197 13841197 C T DNAH5 Missense_Mutation p.E1843K 0.35 benign(0.292) TCGA-FW-A3R5-06 5 13841810 13841810 G A DNAH5 Silent p.F1825F 0.33 TCGA-FW-A3R5-06 5 13841872 13841872 G A DNAH5 Missense_Mutation p.R1805C 0.27 possibly_damaging(0.898) TCGA-FW-A3R5-06 5 13845085 13845085 C T DNAH5 Missense_Mutation p.R1711Q 0.19 benign(0.005) TCGA-FW-A3R5-06 5 13867921 13867921 G A DNAH5 Missense_Mutation p.L1339F 0.30 possibly_damaging(0.587) TCGA-FW-A3R5-06 5 138707942 138707942 C T SLC23A1 Missense_Mutation p.G521E 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 13870878 13870878 C T DNAH5 Missense_Mutation p.E1278K 0.18 benign(0.292) TCGA-FW-A3R5-06 5 13870918 13870918 C T DNAH5 Silent p.R1264R 0.20 TCGA-FW-A3R5-06 5 13870920 13870920 T G DNAH5 Silent p.R1264R 0.21 TCGA-FW-A3R5-06 5 13870966 13870966 C T DNAH5 Silent p.K1248K 0.22 TCGA-FW-A3R5-06 5 13870993 13870993 G A DNAH5 Silent p.F1239F 0.27 TCGA-FW-A3R5-06 5 138716319 138716319 C T SLC23A1 Missense_Mutation p.E134K 0.35 tolerated(0.69) benign(0.038) TCGA-FW-A3R5-06 5 138749720 138749720 G A DNAJC18 3'UTR 0.29 TCGA-FW-A3R5-06 5 13882840 13882840 G A DNAH5 Nonsense_Mutation p.Q1087* 0.11 TCGA-FW-A3R5-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.34 probably_damaging(0.931) TCGA-FW-A3R5-06 5 138855874 138855874 G A TMEM173 Missense_Mutation p.P371L 0.33 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 13901376 13901376 C T DNAH5 Silent p.R679R 0.25 TCGA-FW-A3R5-06 5 139060312 139060312 C T CXXC5 Silent p.P68P 0.22 TCGA-FW-A3R5-06 5 139188988 139188988 C T PSD2 5'UTR 0.59 TCGA-FW-A3R5-06 5 139189308 139189308 G A PSD2 Missense_Mutation p.E95K 0.22 deleterious_low_confidence(0.01) benign(0.05) TCGA-FW-A3R5-06 5 139192923 139192923 G A PSD2 Missense_Mutation p.R134Q 0.19 tolerated(0.14) possibly_damaging(0.857) TCGA-FW-A3R5-06 5 139192924 139192924 G A PSD2 Silent p.R134R 0.20 TCGA-FW-A3R5-06 5 139193282 139193282 G A PSD2 Missense_Mutation p.G254S 0.31 tolerated(0.17) benign(0.009) TCGA-FW-A3R5-06 5 13919431 13919431 C T DNAH5 Missense_Mutation p.E277K 0.08 possibly_damaging(0.621) TCGA-FW-A3R5-06 5 139197070 139197070 G A PSD2 Missense_Mutation p.E341K 0.32 deleterious(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 5 13920608 13920608 C T DNAH5 Nonsense_Mutation p.W260* 0.24 TCGA-FW-A3R5-06 5 139216447 139216447 C T PSD2 Silent p.F485F 0.33 TCGA-FW-A3R5-06 5 139216801 139216801 G A PSD2 Missense_Mutation p.G548E 0.33 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 5 139221945 139221945 C T PSD2 Silent p.A734A 0.26 TCGA-FW-A3R5-06 5 13922221 13922221 C T DNAH5 Missense_Mutation p.E219K 0.29 benign(0.292) TCGA-FW-A3R5-06 5 13922279 13922279 G A DNAH5 Silent p.F199F 0.30 TCGA-FW-A3R5-06 5 13922350 13922350 G A DNAH5 Missense_Mutation p.L176F 0.26 possibly_damaging(0.587) TCGA-FW-A3R5-06 5 139231339 139231339 G A NRG2 Missense_Mutation p.S541L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 5 139232060 139232060 G A NRG2 Missense_Mutation p.P501S 0.11 tolerated(0.31) possibly_damaging(0.908) TCGA-FW-A3R5-06 5 13944570 13944570 G A DNAH5 5'UTR 0.30 TCGA-FW-A3R5-06 5 139876656 139876656 C T ANKHD1 Missense_Mutation p.P933S 0.26 unknown(0) TCGA-FW-A3R5-06 5 139884519 139884519 C T ANKHD1 Missense_Mutation p.P1040S 0.28 unknown(0) TCGA-FW-A3R5-06 5 139889761 139889761 C T ANKHD1 Missense_Mutation p.R1367C 0.34 possibly_damaging(0.898) TCGA-FW-A3R5-06 5 139938380 139938380 G A APBB3 Silent p.A424A 0.27 TCGA-FW-A3R5-06 5 139940249 139940249 G A APBB3 Missense_Mutation p.S343F 0.20 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 5 139942061 139942061 G A APBB3 Silent p.G125G 0.25 TCGA-FW-A3R5-06 5 140011714 140011714 G A CD14 Silent p.F285F 0.14 TCGA-FW-A3R5-06 5 140011718 140011718 G A CD14 Missense_Mutation p.S284L 0.23 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 5 140075096 140075096 C T HARS2 Missense_Mutation p.P135S 0.24 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 5 140167039 140167039 C T PCDHA1 Silent p.S388S 0.35 TCGA-FW-A3R5-06 5 140167170 140167170 C T PCDHA1 Missense_Mutation p.S432L 0.26 tolerated_low_confidence(0.06) benign(0.04) TCGA-FW-A3R5-06 5 140167176 140167176 C T PCDHA1 Missense_Mutation p.S434L 0.24 deleterious_low_confidence(0.04) benign(0.072) TCGA-FW-A3R5-06 5 140167678 140167678 G A PCDHA1 Silent p.S601S 0.31 TCGA-FW-A3R5-06 5 140167993 140167993 G A PCDHA1 Silent p.A706A 0.30 TCGA-FW-A3R5-06 5 140174612 140174612 C T PCDHA2 Silent p.L21L 0.26 TCGA-FW-A3R5-06 5 140174721 140174721 G A PCDHA2 Missense_Mutation p.E58K 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.796) TCGA-FW-A3R5-06 5 140175117 140175117 G A PCDHA2 Missense_Mutation p.E190K 0.28 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 5 140175833 140175833 G A PCDHA2 Silent p.R428R 0.36 TCGA-FW-A3R5-06 5 140176128 140176128 G A PCDHA2 Missense_Mutation p.E527K 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.68) TCGA-FW-A3R5-06 5 140176476 140176476 C T PCDHA2 Missense_Mutation p.P643S 0.29 tolerated_low_confidence(0.15) benign(0.066) TCGA-FW-A3R5-06 5 140176787 140176787 G A PCDHA2 Silent p.G746G 0.32 TCGA-FW-A3R5-06 5 140181341 140181341 G A PCDHA3 Missense_Mutation p.E187K 0.40 tolerated_low_confidence(0.21) benign(0.064) TCGA-FW-A3R5-06 5 140181386 140181386 C T PCDHA3 Nonsense_Mutation p.R202* 0.10 TCGA-FW-A3R5-06 5 140181539 140181539 G A PCDHA3 Missense_Mutation p.E253K 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 140182108 140182108 C T PCDHA3 Silent p.S442S 0.31 TCGA-FW-A3R5-06 5 140182156 140182156 C T PCDHA3 Silent p.S458S 0.30 TCGA-FW-A3R5-06 5 140182444 140182444 C T PCDHA3 Silent p.F554F 0.11 TCGA-FW-A3R5-06 5 140182558 140182558 G A PCDHA3 Silent p.A592A 0.23 TCGA-FW-A3R5-06 5 140182885 140182885 C T PCDHA3 Silent p.I701I 0.07 TCGA-FW-A3R5-06 5 140183064 140183064 G A PCDHA3 Missense_Mutation p.G761E 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-FW-A3R5-06 5 140186830 140186830 C T PCDHA4 Missense_Mutation p.L20F 0.29 tolerated_low_confidence(0.14) benign(0.006) TCGA-FW-A3R5-06 5 140187042 140187042 C T PCDHA4 Silent p.I90I 0.32 TCGA-FW-A3R5-06 5 140187260 140187260 G A PCDHA4 Missense_Mutation p.G163E 0.25 deleterious_low_confidence(0.02) benign(0.327) TCGA-FW-A3R5-06 5 140187261 140187261 G A PCDHA4 Silent p.G163G 0.25 TCGA-FW-A3R5-06 5 140187670 140187670 G A PCDHA4 Missense_Mutation p.G300R 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140187672 140187672 A C PCDHA4 Silent p.G300G 0.17 TCGA-FW-A3R5-06 5 140187953 140187953 C T PCDHA4 Missense_Mutation p.P394L 0.09 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FW-A3R5-06 5 140188055 140188055 G A PCDHA4 Missense_Mutation p.R428Q 0.22 tolerated_low_confidence(0.13) benign(0.089) TCGA-FW-A3R5-06 5 140188164 140188164 G A PCDHA4 Silent p.V464V 0.33 TCGA-FW-A3R5-06 5 140188507 140188507 G A PCDHA4 Missense_Mutation p.E579K 0.20 deleterious_low_confidence(0.02) benign(0.15) TCGA-FW-A3R5-06 5 140188634 140188634 C T PCDHA4 Missense_Mutation p.P621L 0.21 tolerated_low_confidence(0.07) benign(0.013) TCGA-FW-A3R5-06 5 140189125 140189125 C T PCDHA4 Nonsense_Mutation p.Q785* 0.09 TCGA-FW-A3R5-06 5 140201489 140201489 C T PCDHA5 Silent p.F43F 0.18 TCGA-FW-A3R5-06 5 140202010 140202010 G A PCDHA5 Missense_Mutation p.G217E 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 140202114 140202114 G A PCDHA5 Missense_Mutation p.E252K 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 140202461 140202461 C T PCDHA5 Silent p.V367V 0.36 TCGA-FW-A3R5-06 5 140203019 140203019 C T PCDHA5 Silent p.F553F 0.28 TCGA-FW-A3R5-06 5 140207969 140207969 G A PCDHA6 Missense_Mutation p.R98Q 0.20 tolerated_low_confidence(0.19) benign(0.183) TCGA-FW-A3R5-06 5 140208133 140208133 C T PCDHA6 Missense_Mutation p.P153S 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.609) TCGA-FW-A3R5-06 5 140208515 140208515 C T PCDHA6 Missense_Mutation p.S280F 0.32 deleterious_low_confidence(0.05) benign(0.262) TCGA-FW-A3R5-06 5 140208709 140208709 G A PCDHA6 Missense_Mutation p.D345N 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140208798 140208798 G A PCDHA6 Silent p.V374V 0.25 TCGA-FW-A3R5-06 5 140208940 140208940 G A PCDHA6 Missense_Mutation p.E422K 0.25 tolerated_low_confidence(0.32) benign(0.039) TCGA-FW-A3R5-06 5 140209452 140209452 G A PCDHA6 Silent p.A592A 0.22 TCGA-FW-A3R5-06 5 140209644 140209644 G A PCDHA6 Silent p.E656E 0.18 TCGA-FW-A3R5-06 5 140214889 140214889 T C PCDHA7 Silent p.H307H 0.35 TCGA-FW-A3R5-06 5 140215263 140215263 C T PCDHA7 Missense_Mutation p.S432L 0.28 tolerated_low_confidence(0.05) benign(0.026) TCGA-FW-A3R5-06 5 140215333 140215333 C T PCDHA7 Silent p.F455F 0.27 TCGA-FW-A3R5-06 5 140215640 140215640 G A PCDHA7 Missense_Mutation p.E558K 0.29 deleterious_low_confidence(0.02) benign(0.3) TCGA-FW-A3R5-06 5 140216007 140216007 C T PCDHA7 Missense_Mutation p.S680L 0.21 tolerated_low_confidence(0.1) benign(0.018) TCGA-FW-A3R5-06 5 140216077 140216077 C T PCDHA7 Silent p.A703A 0.08 TCGA-FW-A3R5-06 5 140221126 140221126 C T PCDHA8 Missense_Mutation p.L74F 0.10 deleterious_low_confidence(0.05) benign(0.272) TCGA-FW-A3R5-06 5 140221334 140221334 C T PCDHA8 Missense_Mutation p.S143L 0.29 tolerated_low_confidence(0.71) benign(0.002) TCGA-FW-A3R5-06 5 140222037 140222037 C T PCDHA8 Silent p.L377L 0.31 TCGA-FW-A3R5-06 5 140222216 140222216 C T PCDHA8 Missense_Mutation p.A437V 0.48 deleterious_low_confidence(0.04) benign(0.043) TCGA-FW-A3R5-06 5 140222217 140222217 C T PCDHA8 Silent p.A437A 0.51 TCGA-FW-A3R5-06 5 140222493 140222493 G A PCDHA8 Silent p.E529E 0.63 TCGA-FW-A3R5-06 5 140222682 140222682 G A PCDHA8 Silent p.A592A 0.50 TCGA-FW-A3R5-06 5 140222729 140222729 C T PCDHA8 Missense_Mutation p.S608L 0.41 tolerated_low_confidence(0.05) benign(0.411) TCGA-FW-A3R5-06 5 140222821 140222821 G A PCDHA8 Missense_Mutation p.E639K 0.54 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-FW-A3R5-06 5 140227901 140227901 G A PCDHA9 5'UTR 0.73 TCGA-FW-A3R5-06 5 140227945 140227945 G A PCDHA9 5'UTR 0.59 TCGA-FW-A3R5-06 5 140227949 140227949 G A PCDHA9 5'UTR 0.19 TCGA-FW-A3R5-06 5 140229372 140229372 G A PCDHA9 Missense_Mutation p.G431D 0.13 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-FW-A3R5-06 5 140230326 140230326 C T PCDHA9 Missense_Mutation p.S749L 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.79) TCGA-FW-A3R5-06 5 140230425 140230425 C T PCDHA9 Missense_Mutation p.S782F 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-FW-A3R5-06 5 140230471 140230471 G A PCDHA9 Silent p.G797G 0.54 TCGA-FW-A3R5-06 5 140235691 140235691 C T PCDHA10 Missense_Mutation p.L20F 0.27 tolerated_low_confidence(0.46) possibly_damaging(0.703) TCGA-FW-A3R5-06 5 140249931 140249931 G A PCDHA11 Missense_Mutation p.E415K 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140250110 140250110 C T PCDHA11 Silent p.F474F 0.29 TCGA-FW-A3R5-06 5 140250254 140250254 G A PCDHA11 Silent p.L522L 0.26 TCGA-FW-A3R5-06 5 140250700 140250700 G A PCDHA11 Missense_Mutation p.S671N 0.19 tolerated_low_confidence(0.22) benign(0.008) TCGA-FW-A3R5-06 5 140250719 140250719 C T PCDHA11 Silent p.A677A 0.08 TCGA-FW-A3R5-06 5 140251067 140251067 T C PCDHA11 Silent p.N793N 0.17 TCGA-FW-A3R5-06 5 140255182 140255182 G A PCDHA12 Missense_Mutation p.G42D 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140255871 140255871 G A PCDHA12 Missense_Mutation p.G272R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 140256043 140256043 C T PCDHA12 Missense_Mutation p.S329F 0.27 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-FW-A3R5-06 5 140256729 140256729 G A PCDHA12 Missense_Mutation p.E558K 0.29 deleterious_low_confidence(0.02) benign(0.169) TCGA-FW-A3R5-06 5 140262462 140262462 G A PCDHA13 Silent p.E203E 0.07 TCGA-FW-A3R5-06 5 140262588 140262588 C T PCDHA13 Silent p.S245S 0.26 TCGA-FW-A3R5-06 5 140262636 140262636 G A PCDHA13 Silent p.V261V 0.23 TCGA-FW-A3R5-06 5 140263426 140263426 C T PCDHA13 Missense_Mutation p.H525Y 0.09 tolerated_low_confidence(0.18) benign(0.057) TCGA-FW-A3R5-06 5 140263531 140263531 G A PCDHA13 Missense_Mutation p.D560N 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 140307140 140307140 C T PCDHAC1 Silent p.I221I 0.21 TCGA-FW-A3R5-06 5 140307420 140307420 G A PCDHAC1 Missense_Mutation p.E315K 0.28 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 5 140307510 140307510 C T PCDHAC1 Missense_Mutation p.L345F 0.30 tolerated(0.12) benign(0.035) TCGA-FW-A3R5-06 5 140307705 140307705 G A PCDHAC1 Missense_Mutation p.E410K 0.10 deleterious(0.03) benign(0.327) TCGA-FW-A3R5-06 5 140307828 140307828 G A PCDHAC1 Missense_Mutation p.E451K 0.36 tolerated(0.09) benign(0.424) TCGA-FW-A3R5-06 5 140308563 140308563 C T PCDHAC1 Silent p.L696L 0.25 TCGA-FW-A3R5-06 5 140308937 140308937 C T PCDHAC1 Intron 0.12 TCGA-FW-A3R5-06 5 1403202 1403202 G A SLC6A3 Silent p.F534F 0.31 TCGA-FW-A3R5-06 5 140347522 140347522 G A PCDHAC2 Missense_Mutation p.D391N 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140348028 140348028 G A PCDHAC2 Silent p.L559L 0.25 TCGA-FW-A3R5-06 5 140348124 140348124 C T PCDHAC2 Silent p.F591F 0.36 TCGA-FW-A3R5-06 5 140348165 140348165 C T PCDHAC2 Missense_Mutation p.T605I 0.30 deleterious(0.03) probably_damaging(0.944) TCGA-FW-A3R5-06 5 140348302 140348302 G A PCDHAC2 Missense_Mutation p.E651K 0.28 tolerated(1) possibly_damaging(0.497) TCGA-FW-A3R5-06 5 140348338 140348338 C T PCDHAC2 Nonsense_Mutation p.R663* 0.21 TCGA-FW-A3R5-06 5 140348411 140348411 T C PCDHAC2 Missense_Mutation p.I687T 0.26 tolerated(0.7) benign(0.004) TCGA-FW-A3R5-06 5 140348695 140348695 C T PCDHAC2 Nonsense_Mutation p.R782* 0.25 TCGA-FW-A3R5-06 5 140348709 140348709 C T PCDHAC2 Silent p.S786S 0.28 TCGA-FW-A3R5-06 5 140348807 140348807 C T PCDHAC2 Missense_Mutation p.P819L 0.21 tolerated(0.29) benign(0.03) TCGA-FW-A3R5-06 5 140358575 140358575 G A PCDHAC1 Silent p.L825L 0.17 TCGA-FW-A3R5-06 5 140362060 140362060 C T PCDHAC1 Silent p.S831S 0.33 TCGA-FW-A3R5-06 5 140389325 140389325 G A PCDHAC1 Missense_Mutation p.D899N 0.07 deleterious(0.04) possibly_damaging(0.848) TCGA-FW-A3R5-06 5 140389600 140389600 C T PCDHAC1 3'UTR 0.21 TCGA-FW-A3R5-06 5 140389601 140389601 C T PCDHAC1 3'UTR 0.20 TCGA-FW-A3R5-06 5 140389655 140389655 C T PCDHAC1 3'UTR 0.19 TCGA-FW-A3R5-06 5 140431000 140431000 G A PCDHB1 5'UTR 0.23 TCGA-FW-A3R5-06 5 140431416 140431416 G A PCDHB1 Missense_Mutation p.V121I 0.23 tolerated(0.1) probably_damaging(0.985) TCGA-FW-A3R5-06 5 140431664 140431664 G A PCDHB1 Silent p.E203E 0.14 TCGA-FW-A3R5-06 5 140431712 140431712 C T PCDHB1 Silent p.S219S 0.27 TCGA-FW-A3R5-06 5 140431856 140431856 G A PCDHB1 Silent p.V267V 0.19 TCGA-FW-A3R5-06 5 140432190 140432190 G A PCDHB1 Missense_Mutation p.G379R 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140432226 140432226 C T PCDHB1 Missense_Mutation p.P391S 0.35 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 140432511 140432511 C T PCDHB1 Nonsense_Mutation p.Q486* 0.19 TCGA-FW-A3R5-06 5 140433101 140433101 A G PCDHB1 Silent p.R682R 0.23 TCGA-FW-A3R5-06 5 140433147 140433147 C T PCDHB1 Missense_Mutation p.L698F 0.22 deleterious(0) possibly_damaging(0.845) TCGA-FW-A3R5-06 5 140433410 140433410 G A PCDHB1 Silent p.G785G 0.28 TCGA-FW-A3R5-06 5 140433422 140433422 G A PCDHB1 Missense_Mutation p.M789I 0.29 tolerated(0.28) benign(0) TCGA-FW-A3R5-06 5 140474311 140474311 G A PCDHB2 5'UTR 0.31 TCGA-FW-A3R5-06 5 140474453 140474453 C T PCDHB2 Nonsense_Mutation p.Q27* 0.30 TCGA-FW-A3R5-06 5 140474538 140474538 G A PCDHB2 Missense_Mutation p.G55E 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.589) TCGA-FW-A3R5-06 5 140474636 140474636 T G PCDHB2 Missense_Mutation p.L88V 0.30 tolerated_low_confidence(0.09) benign(0.194) TCGA-FW-A3R5-06 5 140474657 140474657 G A PCDHB2 Missense_Mutation p.E95K 0.21 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-FW-A3R5-06 5 140475124 140475124 G A PCDHB2 Silent p.E250E 0.11 TCGA-FW-A3R5-06 5 140475258 140475258 G A PCDHB2 Missense_Mutation p.R295Q 0.08 tolerated_low_confidence(0.55) benign(0.003) TCGA-FW-A3R5-06 5 140475273 140475273 C T PCDHB2 Missense_Mutation p.S300L 0.34 tolerated_low_confidence(0.05) probably_damaging(0.971) TCGA-FW-A3R5-06 5 140475757 140475757 C T PCDHB2 Silent p.F461F 0.18 TCGA-FW-A3R5-06 5 140475911 140475911 G A PCDHB2 Missense_Mutation p.G513S 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 140476100 140476100 G A PCDHB2 Missense_Mutation p.E576K 0.26 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-FW-A3R5-06 5 140476188 140476188 C T PCDHB2 Missense_Mutation p.S605L 0.22 deleterious(0) probably_damaging(0.966) TCGA-FW-A3R5-06 5 140476693 140476693 C T PCDHB2 Silent p.I773I 0.26 TCGA-FW-A3R5-06 5 140480201 140480201 G A PCDHB3 5'Flank 0.31 TCGA-FW-A3R5-06 5 140480282 140480282 C T PCDHB3 Missense_Mutation p.L17F 0.11 tolerated_low_confidence(0.58) benign(0.011) TCGA-FW-A3R5-06 5 140480344 140480344 G A PCDHB3 Silent p.E37E 0.10 TCGA-FW-A3R5-06 5 140480398 140480398 G A PCDHB3 Silent p.R55R 0.25 TCGA-FW-A3R5-06 5 140480413 140480413 C T PCDHB3 Silent p.A60A 0.32 TCGA-FW-A3R5-06 5 140480622 140480622 C T PCDHB3 Missense_Mutation p.S130F 0.29 deleterious_low_confidence(0.01) benign(0.015) TCGA-FW-A3R5-06 5 140480800 140480800 G A PCDHB3 Silent p.R189R 0.21 TCGA-FW-A3R5-06 5 140481105 140481105 C T PCDHB3 Missense_Mutation p.T291I 0.32 deleterious_low_confidence(0.03) benign(0.112) TCGA-FW-A3R5-06 5 140481610 140481610 C T PCDHB3 Silent p.F459F 0.30 TCGA-FW-A3R5-06 5 140481842 140481842 G A PCDHB3 Missense_Mutation p.G537S 0.27 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FW-A3R5-06 5 140481952 140481952 C T PCDHB3 Silent p.T573T 0.19 TCGA-FW-A3R5-06 5 140501656 140501656 C T PCDHB4 Missense_Mutation p.R26C 0.29 tolerated_low_confidence(0.13) benign(0) TCGA-FW-A3R5-06 5 140501770 140501770 C A PCDHB4 Silent p.R64R 0.23 TCGA-FW-A3R5-06 5 140501994 140501994 C T PCDHB4 Silent p.L138L 0.25 TCGA-FW-A3R5-06 5 140502563 140502563 G A PCDHB4 Missense_Mutation p.G328E 0.31 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-FW-A3R5-06 5 140503381 140503381 C T PCDHB4 Silent p.L601L 0.28 TCGA-FW-A3R5-06 5 140503592 140503592 C T PCDHB4 Missense_Mutation p.P671L 0.18 deleterious_low_confidence(0.01) benign(0.043) TCGA-FW-A3R5-06 5 140515442 140515442 C T PCDHB5 Silent p.I142I 0.18 TCGA-FW-A3R5-06 5 140515443 140515443 C T PCDHB5 Missense_Mutation p.P143S 0.19 tolerated_low_confidence(0.68) benign(0.003) TCGA-FW-A3R5-06 5 140515551 140515551 C T PCDHB5 Missense_Mutation p.H179Y 0.27 tolerated_low_confidence(0.07) benign(0.027) TCGA-FW-A3R5-06 5 140515802 140515802 C T PCDHB5 Silent p.V262V 0.33 TCGA-FW-A3R5-06 5 140516156 140516156 G A PCDHB5 Missense_Mutation p.M380I 0.29 tolerated_low_confidence(0.2) benign(0.003) TCGA-FW-A3R5-06 5 140516601 140516601 C T PCDHB5 Missense_Mutation p.R529C 0.38 deleterious_low_confidence(0.02) benign(0.293) TCGA-FW-A3R5-06 5 140516686 140516686 C T PCDHB5 Missense_Mutation p.S557L 0.31 deleterious_low_confidence(0) benign(0.157) TCGA-FW-A3R5-06 5 140516978 140516978 C T PCDHB5 Silent p.T654T 0.12 TCGA-FW-A3R5-06 5 140530017 140530017 C T PCDHB6 Missense_Mutation p.S60L 0.30 deleterious(0.05) benign(0.006) TCGA-FW-A3R5-06 5 140530577 140530577 G A PCDHB6 Missense_Mutation p.E247K 0.31 tolerated(0.19) benign(0.004) TCGA-FW-A3R5-06 5 140530609 140530609 C T PCDHB6 Silent p.G257G 0.26 TCGA-FW-A3R5-06 5 140531185 140531185 C T PCDHB6 Silent p.F449F 0.29 TCGA-FW-A3R5-06 5 140532154 140532154 C T PCDHB6 Silent p.F772F 0.22 TCGA-FW-A3R5-06 5 140532181 140532181 G A PCDHB6 Missense_Mutation p.M781I 0.10 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 5 140536603 140536603 G A PCDHB17 Missense_Mutation p.D343N 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140537091 140537091 C T PCDHB17 Silent p.V505V 0.21 TCGA-FW-A3R5-06 5 140537301 140537301 G A PCDHB17 Silent p.P575P 0.16 TCGA-FW-A3R5-06 5 140537357 140537357 G A PCDHB17 3'UTR 0.12 TCGA-FW-A3R5-06 5 140537693 140537693 G A PCDHB17 3'UTR 0.21 TCGA-FW-A3R5-06 5 140537700 140537700 C T PCDHB17 3'UTR 0.05 TCGA-FW-A3R5-06 5 140552501 140552501 G A PCDHB7 Missense_Mutation p.E29K 0.20 deleterious_low_confidence(0.04) benign(0.103) TCGA-FW-A3R5-06 5 140553026 140553026 G A PCDHB7 Missense_Mutation p.E204K 0.09 tolerated_low_confidence(0.15) benign(0.003) TCGA-FW-A3R5-06 5 140553072 140553072 C T PCDHB7 Missense_Mutation p.S219F 0.22 deleterious_low_confidence(0) benign(0.099) TCGA-FW-A3R5-06 5 140553608 140553608 G A PCDHB7 Missense_Mutation p.E398K 0.41 tolerated_low_confidence(0.54) benign(0.003) TCGA-FW-A3R5-06 5 140553899 140553899 G A PCDHB7 Missense_Mutation p.D495N 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.613) TCGA-FW-A3R5-06 5 140553997 140553997 C T PCDHB7 Silent p.F527F 0.33 TCGA-FW-A3R5-06 5 140554157 140554157 G A PCDHB7 Missense_Mutation p.E581K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.451) TCGA-FW-A3R5-06 5 140557707 140557707 C T PCDHB8 Missense_Mutation p.P31L 0.08 tolerated_low_confidence(0.92) benign(0.026) TCGA-FW-A3R5-06 5 140558038 140558038 G A PCDHB8 Silent p.V141V 0.22 TCGA-FW-A3R5-06 5 140558075 140558075 C T PCDHB8 Missense_Mutation p.P154S 0.19 tolerated_low_confidence(0.14) benign(0.035) TCGA-FW-A3R5-06 5 140559002 140559002 G A PCDHB8 Missense_Mutation p.E463K 0.20 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-FW-A3R5-06 5 140559123 140559123 C T PCDHB8 Missense_Mutation p.S503F 0.15 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-FW-A3R5-06 5 140559734 140559734 C T PCDHB8 Missense_Mutation p.L707F 0.19 deleterious_low_confidence(0.04) benign(0.052) TCGA-FW-A3R5-06 5 140559762 140559762 G A PCDHB8 Missense_Mutation p.R716K 0.09 tolerated_low_confidence(0.12) benign(0.008) TCGA-FW-A3R5-06 5 140562537 140562537 G A PCDHB16 Missense_Mutation p.E135K 0.25 deleterious_low_confidence(0.03) benign(0.009) TCGA-FW-A3R5-06 5 140563283 140563283 C T PCDHB16 Silent p.S383S 0.14 TCGA-FW-A3R5-06 5 140564245 140564245 C T PCDHB16 Missense_Mutation p.S704L 0.35 deleterious_low_confidence(0) benign(0.021) TCGA-FW-A3R5-06 5 140564550 140564550 C T PCDHB16 3'UTR 0.32 TCGA-FW-A3R5-06 5 140572149 140572149 C T PCDHB10 Silent p.F8F 0.27 TCGA-FW-A3R5-06 5 140572729 140572729 C T PCDHB10 Missense_Mutation p.R202W 0.27 deleterious_low_confidence(0.05) benign(0.106) TCGA-FW-A3R5-06 5 140573509 140573509 G A PCDHB10 Missense_Mutation p.E462K 0.25 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-FW-A3R5-06 5 140573667 140573667 C T PCDHB10 Silent p.F514F 0.13 TCGA-FW-A3R5-06 5 140579609 140579609 G A PCDHB11 Missense_Mutation p.E88K 0.32 deleterious_low_confidence(0.03) benign(0.142) TCGA-FW-A3R5-06 5 140579921 140579921 C T PCDHB11 Missense_Mutation p.P192S 0.19 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FW-A3R5-06 5 140580008 140580008 C T PCDHB11 Missense_Mutation p.P221S 0.26 deleterious_low_confidence(0.04) benign(0.262) TCGA-FW-A3R5-06 5 140580266 140580266 C T PCDHB11 Silent p.L307L 0.37 TCGA-FW-A3R5-06 5 140580471 140580471 C T PCDHB11 Missense_Mutation p.S375F 0.22 deleterious_low_confidence(0) benign(0.333) TCGA-FW-A3R5-06 5 140580483 140580483 G A PCDHB11 Missense_Mutation p.G379E 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 5 140580591 140580591 C T PCDHB11 Missense_Mutation p.A415V 0.20 deleterious_low_confidence(0.01) benign(0.271) TCGA-FW-A3R5-06 5 140580592 140580592 C T PCDHB11 Silent p.A415A 0.19 TCGA-FW-A3R5-06 5 140580724 140580724 C T PCDHB11 Silent p.F459F 0.22 TCGA-FW-A3R5-06 5 140581289 140581289 G A PCDHB11 Missense_Mutation p.G648S 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3R5-06 5 140581303 140581303 C T PCDHB11 Silent p.R652R 0.24 TCGA-FW-A3R5-06 5 140581366 140581366 C T PCDHB11 Silent p.L673L 0.21 TCGA-FW-A3R5-06 5 140588852 140588852 G A PCDHB12 Missense_Mutation p.D125N 0.30 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FW-A3R5-06 5 140594352 140594352 C T PCDHB13 Silent p.G219G 0.20 TCGA-FW-A3R5-06 5 140594458 140594458 G A PCDHB13 Missense_Mutation p.D255N 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-FW-A3R5-06 5 140594625 140594625 C T PCDHB13 Silent p.F310F 0.33 TCGA-FW-A3R5-06 5 140595325 140595325 G A PCDHB13 Missense_Mutation p.E544K 0.30 deleterious_low_confidence(0.01) benign(0.009) TCGA-FW-A3R5-06 5 140595640 140595640 G A PCDHB13 Missense_Mutation p.E649K 0.26 deleterious_low_confidence(0.01) benign(0.219) TCGA-FW-A3R5-06 5 140596022 140596022 C T PCDHB13 Missense_Mutation p.P776L 0.30 tolerated_low_confidence(0.47) benign(0.002) TCGA-FW-A3R5-06 5 140604454 140604454 C T PCDHB14 Silent p.F459F 0.27 TCGA-FW-A3R5-06 5 140605214 140605214 C T PCDHB14 Silent p.L713L 0.15 TCGA-FW-A3R5-06 5 140605356 140605356 G A PCDHB14 Missense_Mutation p.G760E 0.25 tolerated_low_confidence(0.11) benign(0.11) TCGA-FW-A3R5-06 5 140615524 140615524 C T PCDHB18 RNA 0.23 TCGA-FW-A3R5-06 5 140615792 140615792 G A PCDHB18 RNA 0.34 TCGA-FW-A3R5-06 5 140616020 140616020 G A PCDHB18 RNA 0.26 TCGA-FW-A3R5-06 5 140625476 140625476 G A PCDHB15 Silent p.L110L 0.29 TCGA-FW-A3R5-06 5 140625528 140625528 G A PCDHB15 Missense_Mutation p.D128N 0.28 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-FW-A3R5-06 5 140626236 140626236 G A PCDHB15 Missense_Mutation p.E364K 0.19 deleterious_low_confidence(0) benign(0.057) TCGA-FW-A3R5-06 5 140626688 140626688 C T PCDHB15 Silent p.F514F 0.16 TCGA-FW-A3R5-06 5 140627270 140627270 C T PCDHB15 Silent p.F708F 0.17 TCGA-FW-A3R5-06 5 140682678 140682678 G A SLC25A2 Missense_Mutation p.T252I 0.24 tolerated(0.15) probably_damaging(0.982) TCGA-FW-A3R5-06 5 140683229 140683229 G A SLC25A2 Silent p.G68G 0.24 TCGA-FW-A3R5-06 5 140711077 140711077 G A PCDHGA1 Missense_Mutation p.E276K 0.28 tolerated_low_confidence(0.22) benign(0.03) TCGA-FW-A3R5-06 5 140711218 140711218 G A PCDHGA1 Missense_Mutation p.D323N 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140712539 140712539 C T PCDHGA1 Missense_Mutation p.S763L 0.30 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-FW-A3R5-06 5 140718688 140718688 G A PCDHGA2 Silent p.K50K 0.19 TCGA-FW-A3R5-06 5 140718804 140718804 G A PCDHGA2 Missense_Mutation p.R89K 0.16 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-FW-A3R5-06 5 140719089 140719089 G A PCDHGA2 Missense_Mutation p.R184K 0.26 deleterious_low_confidence(0.05) benign(0.033) TCGA-FW-A3R5-06 5 140719097 140719097 G A PCDHGA2 Missense_Mutation p.D187N 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.755) TCGA-FW-A3R5-06 5 140719138 140719138 G A PCDHGA2 Silent p.L200L 0.32 TCGA-FW-A3R5-06 5 140719243 140719243 G A PCDHGA2 Silent p.A235A 0.25 TCGA-FW-A3R5-06 5 140719696 140719696 C T PCDHGA2 Silent p.L386L 0.31 TCGA-FW-A3R5-06 5 140720094 140720094 C T PCDHGA2 Missense_Mutation p.S519F 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140720829 140720829 G A PCDHGA2 Missense_Mutation p.R764Q 0.08 tolerated_low_confidence(0.07) benign(0.048) TCGA-FW-A3R5-06 5 140724405 140724405 C T PCDHGA3 Missense_Mutation p.P269S 0.15 deleterious_low_confidence(0.01) benign(0.327) TCGA-FW-A3R5-06 5 140725003 140725003 G A PCDHGA3 Missense_Mutation p.G468E 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 140725545 140725545 C T PCDHGA3 Missense_Mutation p.H649Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-FW-A3R5-06 5 140725888 140725888 C T PCDHGA3 Missense_Mutation p.S763L 0.16 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-FW-A3R5-06 5 140729881 140729881 C T PCDHGB1 Silent p.F18F 0.20 TCGA-FW-A3R5-06 5 140730381 140730381 G A PCDHGB1 Missense_Mutation p.G185E 0.17 deleterious(0.02) possibly_damaging(0.651) TCGA-FW-A3R5-06 5 140730425 140730425 G A PCDHGB1 Missense_Mutation p.E200K 0.13 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 140731807 140731807 C T PCDHGB1 Silent p.F660F 0.25 TCGA-FW-A3R5-06 5 140731945 140731945 G A PCDHGB1 Silent p.A706A 0.25 TCGA-FW-A3R5-06 5 140731956 140731956 G T PCDHGB1 Missense_Mutation p.R710L 0.17 deleterious(0.01) possibly_damaging(0.676) TCGA-FW-A3R5-06 5 140732107 140732107 G A PCDHGB1 Silent p.E760E 0.17 TCGA-FW-A3R5-06 5 140735225 140735225 C T PCDHGA4 Missense_Mutation p.P153L 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.723) TCGA-FW-A3R5-06 5 140735371 140735371 C T PCDHGA4 Missense_Mutation p.R202C 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 5 140735501 140735501 C T PCDHGA4 Missense_Mutation p.P245L 0.35 deleterious_low_confidence(0.01) benign(0.261) TCGA-FW-A3R5-06 5 140735502 140735502 C T PCDHGA4 Silent p.P245P 0.35 TCGA-FW-A3R5-06 5 140736825 140736825 C T PCDHGA4 Silent p.D686D 0.32 TCGA-FW-A3R5-06 5 140736879 140736879 C T PCDHGA4 Silent p.F704F 0.29 TCGA-FW-A3R5-06 5 140737029 140737029 C T PCDHGA4 Silent p.S754S 0.19 TCGA-FW-A3R5-06 5 140740411 140740411 G A PCDHGB2 Missense_Mutation p.D237N 0.26 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 5 140740765 140740765 C T PCDHGB2 Missense_Mutation p.P355S 0.26 tolerated(0.5) benign(0.021) TCGA-FW-A3R5-06 5 140741049 140741049 C T PCDHGB2 Silent p.A449A 0.26 TCGA-FW-A3R5-06 5 140744773 140744773 C T PCDHGA5 Silent p.F292F 0.23 TCGA-FW-A3R5-06 5 140745185 140745185 C T PCDHGA5 Missense_Mutation p.P430S 0.26 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FW-A3R5-06 5 140746018 140746018 C T PCDHGA5 Silent p.F707F 0.09 TCGA-FW-A3R5-06 5 140750162 140750162 G A PCDHGB3 Silent p.R67R 0.08 TCGA-FW-A3R5-06 5 140751506 140751506 C T PCDHGB3 Silent p.F515F 0.17 TCGA-FW-A3R5-06 5 140751521 140751521 C T PCDHGB3 Silent p.F520F 0.10 TCGA-FW-A3R5-06 5 140751918 140751918 C T PCDHGB3 Missense_Mutation p.P653S 0.26 tolerated(0.12) possibly_damaging(0.853) TCGA-FW-A3R5-06 5 140751993 140751993 C T PCDHGB3 Missense_Mutation p.R678C 0.19 tolerated(0.1) probably_damaging(0.962) TCGA-FW-A3R5-06 5 140752118 140752118 C T PCDHGB3 Silent p.S719S 0.23 TCGA-FW-A3R5-06 5 140755243 140755243 G A PCDHGA6 Nonsense_Mutation p.W531* 0.22 TCGA-FW-A3R5-06 5 140755960 140755960 C T PCDHGA6 Silent p.F770F 0.20 TCGA-FW-A3R5-06 5 140764587 140764587 C T PCDHGA7 Silent p.F707F 0.28 TCGA-FW-A3R5-06 5 140768559 140768559 C T PCDHGB4 Missense_Mutation p.R370C 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-FW-A3R5-06 5 140769170 140769170 C T PCDHGB4 Silent p.F573F 0.08 TCGA-FW-A3R5-06 5 140769799 140769799 C T PCDHGB4 Missense_Mutation p.S783F 0.12 deleterious(0.04) benign(0.112) TCGA-FW-A3R5-06 5 140772917 140772917 C T PCDHGA8 Silent p.S179S 0.25 TCGA-FW-A3R5-06 5 140773318 140773318 C T PCDHGA8 Missense_Mutation p.S313L 0.19 tolerated_low_confidence(0.12) benign(0.064) TCGA-FW-A3R5-06 5 140773898 140773898 C T PCDHGA8 Silent p.S506S 0.09 TCGA-FW-A3R5-06 5 140774646 140774646 G A PCDHGA8 Missense_Mutation p.E756K 0.10 deleterious_low_confidence(0) benign(0.427) TCGA-FW-A3R5-06 5 140774727 140774727 G A PCDHGA8 Missense_Mutation p.E783K 0.18 deleterious_low_confidence(0) benign(0.043) TCGA-FW-A3R5-06 5 140782717 140782717 C T PCDHGA9 Silent p.I66I 0.32 TCGA-FW-A3R5-06 5 140789314 140789314 C T PCDHGB6 Silent p.F515F 0.16 TCGA-FW-A3R5-06 5 140793597 140793597 C T PCDHGA10 Silent p.F285F 0.35 TCGA-FW-A3R5-06 5 140794788 140794788 C T PCDHGA10 Silent p.F682F 0.28 TCGA-FW-A3R5-06 5 140801196 140801196 C T PCDHGA11 Silent p.F134F 0.26 TCGA-FW-A3R5-06 5 140865966 140865966 C T PCDHGC4 Missense_Mutation p.T409I 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-FW-A3R5-06 5 140866223 140866223 C T PCDHGC4 Silent p.L495L 0.08 TCGA-FW-A3R5-06 5 141029033 141029033 G A FCHSD1 Nonsense_Mutation p.Q102* 0.38 TCGA-FW-A3R5-06 5 141044607 141044607 C T ARAP3 Nonsense_Mutation p.W894* 0.32 TCGA-FW-A3R5-06 5 141051219 141051219 C T ARAP3 Missense_Mutation p.G591E 0.21 tolerated(0.12) possibly_damaging(0.837) TCGA-FW-A3R5-06 5 141052202 141052202 G A ARAP3 Silent p.I434I 0.35 TCGA-FW-A3R5-06 5 141059121 141059121 G A ARAP3 Missense_Mutation p.A230V 0.23 tolerated(0.17) benign(0.002) TCGA-FW-A3R5-06 5 141059162 141059162 G A ARAP3 Silent p.A216A 0.22 TCGA-FW-A3R5-06 5 141309182 141309182 C T KIAA0141 Missense_Mutation p.P150S 0.17 tolerated(0.11) benign(0.139) TCGA-FW-A3R5-06 5 141325255 141325255 C T PCDH12 Silent p.E1082E 0.25 TCGA-FW-A3R5-06 5 141336442 141336442 C T PCDH12 Silent p.R325R 0.31 TCGA-FW-A3R5-06 5 141359747 141359747 C A RNF14 Silent p.S298S 0.19 TCGA-FW-A3R5-06 5 141694698 141694698 G A SPRY4 Silent p.S15S 0.21 TCGA-FW-A3R5-06 5 141993537 141993537 C T FGF1 Silent p.R52R 0.10 TCGA-FW-A3R5-06 5 1422039 1422039 G A SLC6A3 Silent p.I248I 0.22 TCGA-FW-A3R5-06 5 142393656 142393656 G A ARHGAP26 Silent p.S373S 0.13 TCGA-FW-A3R5-06 5 142435638 142435638 C T ARHGAP26 Silent p.F473F 0.08 TCGA-FW-A3R5-06 5 142437254 142437254 C T ARHGAP26 Missense_Mutation p.H494Y 0.23 tolerated(0.31) benign(0.365) TCGA-FW-A3R5-06 5 142513531 142513531 G A ARHGAP26 Splice_Site p.X567_splice 0.30 TCGA-FW-A3R5-06 5 142586780 142586780 C T ARHGAP26 Missense_Mutation p.P669L 0.20 tolerated(0.12) possibly_damaging(0.713) TCGA-FW-A3R5-06 5 142586786 142586786 C T ARHGAP26 Missense_Mutation p.S671L 0.22 tolerated(0.17) benign(0.307) TCGA-FW-A3R5-06 5 142779665 142779665 G A NR3C1 Missense_Mutation p.P247L 0.30 deleterious_low_confidence(0.04) probably_damaging(0.943) TCGA-FW-A3R5-06 5 143586489 143586489 G A KCTD16 Missense_Mutation p.G71E 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 14367010 14367010 C T TRIO Silent p.A932A 0.15 TCGA-FW-A3R5-06 5 14368958 14368958 C T TRIO Missense_Mutation p.R1006C 0.28 probably_damaging(0.972) TCGA-FW-A3R5-06 5 143853220 143853220 C T KCTD16 Intron 0.29 TCGA-FW-A3R5-06 5 143853238 143853238 G A KCTD16 Nonsense_Mutation p.W283* 0.25 TCGA-FW-A3R5-06 5 1441598 1441598 G A SLC6A3 Silent p.F98F 0.29 TCGA-FW-A3R5-06 5 14465696 14465696 C T TRIO Missense_Mutation p.P1904S 0.10 benign(0.439) TCGA-FW-A3R5-06 5 14492705 14492705 C T TRIO Silent p.S2554S 0.28 TCGA-FW-A3R5-06 5 14498703 14498703 C T TRIO Silent p.V2762V 0.32 TCGA-FW-A3R5-06 5 145001 145001 C T PLEKHG4B Missense_Mutation p.A268V 0.29 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 5 145002 145002 C T PLEKHG4B Silent p.A268A 0.28 TCGA-FW-A3R5-06 5 14508475 14508475 C T TRIO Nonsense_Mutation p.R3080* 0.24 TCGA-FW-A3R5-06 5 145246165 145246165 C T GRXCR2 Missense_Mutation p.E155K 0.30 tolerated(0.93) benign(0.318) TCGA-FW-A3R5-06 5 145246231 145246231 G A GRXCR2 Nonsense_Mutation p.R133* 0.29 TCGA-FW-A3R5-06 5 145379722 145379722 G A SH3RF2 Silent p.E160E 0.25 TCGA-FW-A3R5-06 5 145393331 145393331 C T SH3RF2 Missense_Mutation p.L256F 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 145427402 145427402 C T SH3RF2 Missense_Mutation p.S376F 0.27 tolerated(0.14) benign(0.008) TCGA-FW-A3R5-06 5 145427421 145427421 G A SH3RF2 Silent p.A382A 0.57 TCGA-FW-A3R5-06 5 145435641 145435641 G A SH3RF2 Missense_Mutation p.G474S 0.26 tolerated(0.24) benign(0.011) TCGA-FW-A3R5-06 5 145439619 145439619 C T SH3RF2 Silent p.L582L 0.20 TCGA-FW-A3R5-06 5 145439658 145439658 C T SH3RF2 Silent p.S595S 0.22 TCGA-FW-A3R5-06 5 145442113 145442113 C T SH3RF2 Missense_Mutation p.S680F 0.09 tolerated(0.61) benign(0.001) TCGA-FW-A3R5-06 5 145442340 145442340 C T SH3RF2 Intron 0.26 TCGA-FW-A3R5-06 5 145442408 145442408 G A SH3RF2 Intron 0.38 TCGA-FW-A3R5-06 5 145537316 145537316 G A LARS Missense_Mutation p.L272F 0.34 tolerated(0.07) benign(0.026) TCGA-FW-A3R5-06 5 145641171 145641171 C T RBM27 Silent p.N664N 0.27 TCGA-FW-A3R5-06 5 145894431 145894431 C T GPR151 Missense_Mutation p.E416K 0.25 tolerated(0.46) benign(0) TCGA-FW-A3R5-06 5 145894735 145894735 C T GPR151 Silent p.R314R 0.19 TCGA-FW-A3R5-06 5 145895603 145895603 C T GPR151 Missense_Mutation p.G25E 0.09 deleterious(0.03) possibly_damaging(0.724) TCGA-FW-A3R5-06 5 145972622 145972622 G A PPP2R2B Missense_Mutation p.H325Y 0.31 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 5 14601461 14601461 G A FAM105A Silent p.R86R 0.26 TCGA-FW-A3R5-06 5 14607558 14607558 G A FAM105A Silent p.L206L 0.29 TCGA-FW-A3R5-06 5 14610413 14610413 C T FAM105A Missense_Mutation p.P354L 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 5 146236137 146236137 C T PPP2R2B Intron 0.14 TCGA-FW-A3R5-06 5 146777300 146777300 C T DPYSL3 Missense_Mutation p.G578R 0.24 deleterious(0) possibly_damaging(0.84) TCGA-FW-A3R5-06 5 146780333 146780333 C T DPYSL3 Silent p.G458G 0.27 TCGA-FW-A3R5-06 5 146785234 146785234 G A DPYSL3 Silent p.L364L 0.31 TCGA-FW-A3R5-06 5 14693021 14693021 C T FAM105B Missense_Mutation p.S308F 0.27 tolerated(0.34) possibly_damaging(0.688) TCGA-FW-A3R5-06 5 146997584 146997584 C T JAKMIP2 Missense_Mutation p.E746K 0.21 tolerated(1) benign(0.217) TCGA-FW-A3R5-06 5 147016541 147016541 G A JAKMIP2 Missense_Mutation p.A534V 0.10 tolerated(0.25) benign(0.117) TCGA-FW-A3R5-06 5 147027949 147027949 C T JAKMIP2 Missense_Mutation p.R309Q 0.27 deleterious(0.02) probably_damaging(0.964) TCGA-FW-A3R5-06 5 147040970 147040970 C T JAKMIP2 Silent p.K56K 0.34 TCGA-FW-A3R5-06 5 14711348 14711348 C A ANKH Missense_Mutation p.E479D 0.31 tolerated_low_confidence(0.34) benign(0.007) TCGA-FW-A3R5-06 5 147281256 147281256 G A C5orf46 Missense_Mutation p.L51F 0.15 tolerated(0.12) possibly_damaging(0.765) TCGA-FW-A3R5-06 5 1474126 1474126 G A LPCAT1 Silent p.S375S 0.35 TCGA-FW-A3R5-06 5 14746012 14746012 C T ANKH Silent p.T294T 0.21 TCGA-FW-A3R5-06 5 147481403 147481403 G A SPINK5 Silent p.E454E 0.28 TCGA-FW-A3R5-06 5 147494021 147494021 G A SPINK5 Missense_Mutation p.G662S 0.39 deleterious(0.03) possibly_damaging(0.819) TCGA-FW-A3R5-06 5 147498554 147498554 G A SPINK5 Missense_Mutation p.R749K 0.10 tolerated(0.52) benign(0.004) TCGA-FW-A3R5-06 5 14751223 14751223 C T ANKH Silent p.K214K 0.25 TCGA-FW-A3R5-06 5 147516640 147516640 C T SPINK5 3'UTR 0.09 TCGA-FW-A3R5-06 5 147516716 147516716 C T SPINK5 3'UTR 0.43 TCGA-FW-A3R5-06 5 147661689 147661689 C T SPINK13 Missense_Mutation p.P44L 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-FW-A3R5-06 5 147693683 147693683 G A SPINK7 Silent p.K36K 0.30 TCGA-FW-A3R5-06 5 147693756 147693756 G A SPINK7 Missense_Mutation p.G61R 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 147693757 147693757 G A SPINK7 Missense_Mutation p.G61E 0.11 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 5 147803583 147803583 C T FBXO38 Silent p.I547I 0.22 TCGA-FW-A3R5-06 5 147863901 147863901 C T HTR4 Nonsense_Mutation p.W373* 0.37 TCGA-FW-A3R5-06 5 147900526 147900526 C T HTR4 Intron 0.32 TCGA-FW-A3R5-06 5 147929808 147929808 C T HTR4 Missense_Mutation p.G15E 0.24 tolerated(0.09) benign(0.066) TCGA-FW-A3R5-06 5 148207537 148207537 C T ADRB2 Silent p.L381L 0.09 TCGA-FW-A3R5-06 5 148384332 148384332 G A SH3TC2 Missense_Mutation p.P1270L 0.24 tolerated(0.41) benign(0.03) TCGA-FW-A3R5-06 5 148384333 148384333 G A SH3TC2 Missense_Mutation p.P1270S 0.24 tolerated(0.31) benign(0.004) TCGA-FW-A3R5-06 5 148406911 148406911 G A SH3TC2 Missense_Mutation p.S795F 0.11 deleterious(0) benign(0.106) TCGA-FW-A3R5-06 5 148627436 148627436 C T ABLIM3 Missense_Mutation p.S548F 0.16 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 5 148715266 148715266 G C AFAP1L1 Missense_Mutation p.R755T 0.25 tolerated(1) benign(0.101) TCGA-FW-A3R5-06 5 148715267 148715267 G A AFAP1L1 Silent p.R755R 0.26 TCGA-FW-A3R5-06 5 14871614 14871614 G A ANKH 5'UTR 0.54 TCGA-FW-A3R5-06 5 148747925 148747925 C T PCYOX1L Missense_Mutation p.S398F 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 148748050 148748050 C T PCYOX1L Missense_Mutation p.H440Y 0.27 tolerated(0.1) probably_damaging(0.999) TCGA-FW-A3R5-06 5 148756469 148756469 C T IL17B Silent p.L47L 0.27 TCGA-FW-A3R5-06 5 149263071 149263071 C T PDE6A Missense_Mutation p.D686N 0.08 tolerated(0.06) probably_damaging(0.996) TCGA-FW-A3R5-06 5 149263075 149263075 G A PDE6A Silent p.I684I 0.29 TCGA-FW-A3R5-06 5 149274851 149274851 G A PDE6A Silent p.A541A 0.27 TCGA-FW-A3R5-06 5 149323835 149323835 G T PDE6A Missense_Mutation p.F134L 0.24 tolerated(0.07) benign(0.334) TCGA-FW-A3R5-06 5 149323976 149323976 G A PDE6A Silent p.F87F 0.09 TCGA-FW-A3R5-06 5 149361299 149361299 G A SLC26A2 Missense_Mutation p.A715T 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 149449834 149449834 G A CSF1R Silent p.F410F 0.24 TCGA-FW-A3R5-06 5 149453010 149453010 C T CSF1R Silent p.E312E 0.27 TCGA-FW-A3R5-06 5 149456979 149456979 G A CSF1R Missense_Mutation p.S250F 0.26 tolerated(0.24) benign(0.064) TCGA-FW-A3R5-06 5 149460492 149460492 C T CSF1R Missense_Mutation p.E49K 0.32 tolerated(0.4) benign(0.003) TCGA-FW-A3R5-06 5 149460541 149460541 C T CSF1R Silent p.V32V 0.43 TCGA-FW-A3R5-06 5 149495289 149495289 G A PDGFRB 3'UTR 0.53 TCGA-FW-A3R5-06 5 149495315 149495315 G A PDGFRB 3'UTR 0.25 TCGA-FW-A3R5-06 5 149497196 149497196 G A PDGFRB Missense_Mutation p.S1041F 0.24 tolerated(0.16) probably_damaging(0.966) TCGA-FW-A3R5-06 5 149499582 149499582 G A PDGFRB Silent p.F897F 0.14 TCGA-FW-A3R5-06 5 149500802 149500802 C T PDGFRB Missense_Mutation p.V810M 0.24 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 149502729 149502729 C T PDGFRB Missense_Mutation p.G687R 0.27 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 5 149506170 149506170 G A PDGFRB Silent p.P529P 0.11 TCGA-FW-A3R5-06 5 149509438 149509438 C T PDGFRB Silent p.Q487Q 0.39 TCGA-FW-A3R5-06 5 149513291 149513291 G A PDGFRB Silent p.F264F 0.27 TCGA-FW-A3R5-06 5 149546471 149546471 C T CDX1 Missense_Mutation p.S11L 0.25 tolerated(0.15) benign(0.105) TCGA-FW-A3R5-06 5 149563070 149563070 G A CDX1 Missense_Mutation p.E209K 0.29 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 5 149578866 149578866 C T SLC6A7 Silent p.C220C 0.20 TCGA-FW-A3R5-06 5 149627351 149627351 G A CAMK2A Silent p.A309A 0.24 TCGA-FW-A3R5-06 5 149652720 149652720 C T CAMK2A Missense_Mutation p.G22E 0.16 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-FW-A3R5-06 5 149678054 149678054 C T ARSI Missense_Mutation p.V145M 0.29 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 5 149753822 149753822 C T TCOF1 Missense_Mutation p.P319L 0.24 tolerated(0.14) benign(0.122) TCGA-FW-A3R5-06 5 149792299 149792299 C T CD74 Missense_Mutation p.R5K 0.29 tolerated_low_confidence(0.54) benign(0) TCGA-FW-A3R5-06 5 150029801 150029801 C T SYNPO Missense_Mutation p.S899F 0.23 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 5 150051192 150051192 G A MYOZ3 Missense_Mutation p.G84R 0.09 tolerated(0.23) benign(0.002) TCGA-FW-A3R5-06 5 150138568 150138568 G A DCTN4 5'UTR 0.22 TCGA-FW-A3R5-06 5 150276484 150276484 G A ZNF300 Missense_Mutation p.S122F 0.16 tolerated(0.11) benign(0.01) TCGA-FW-A3R5-06 5 150404937 150404937 G A GPX3 Missense_Mutation p.E42K 0.25 tolerated(0.1) benign(0.015) TCGA-FW-A3R5-06 5 150407532 150407532 G A GPX3 Missense_Mutation p.M174I 0.24 tolerated(0.45) benign(0.063) TCGA-FW-A3R5-06 5 150407676 150407676 G A GPX3 Silent p.G222G 0.38 TCGA-FW-A3R5-06 5 150436378 150436378 G A TNIP1 Silent p.N192N 0.09 TCGA-FW-A3R5-06 5 150578630 150578630 C T CCDC69 Missense_Mutation p.E83K 0.24 tolerated(0.12) benign(0.015) TCGA-FW-A3R5-06 5 150646957 150646957 G A GM2A Missense_Mutation p.S176N 0.20 tolerated(0.64) benign(0.004) TCGA-FW-A3R5-06 5 150666980 150666980 C T SLC36A3 Missense_Mutation p.E220K 0.09 tolerated(0.55) benign(0.008) TCGA-FW-A3R5-06 5 150696629 150696629 G A SLC36A2 Missense_Mutation p.P401S 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 150701494 150701494 C T SLC36A2 Intron 0.21 TCGA-FW-A3R5-06 5 150714977 150714977 C T SLC36A2 Silent p.R219R 0.15 TCGA-FW-A3R5-06 5 150723772 150723772 C T SLC36A2 Missense_Mutation p.G74E 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 150856304 150856304 C T SLC36A1 Silent p.L326L 0.25 TCGA-FW-A3R5-06 5 150886928 150886928 C T FAT2 Missense_Mutation p.E4102K 0.21 benign(0.436) TCGA-FW-A3R5-06 5 150932882 150932882 G A FAT2 Missense_Mutation p.P1338S 0.21 benign(0.017) TCGA-FW-A3R5-06 5 150948210 150948210 G A FAT2 Silent p.L95L 0.11 TCGA-FW-A3R5-06 5 151202199 151202199 C T GLRA1 3'UTR 0.29 TCGA-FW-A3R5-06 5 151230975 151230975 G A GLRA1 Silent p.S296S 0.30 TCGA-FW-A3R5-06 5 151304099 151304099 G A GLRA1 Silent p.F4F 0.19 TCGA-FW-A3R5-06 5 151771742 151771742 C T NMUR2 3'UTR 0.19 TCGA-FW-A3R5-06 5 151771802 151771802 C T NMUR2 Missense_Mutation p.E400K 0.28 tolerated_low_confidence(0.86) benign(0.001) TCGA-FW-A3R5-06 5 151784500 151784500 C T NMUR2 Missense_Mutation p.G59R 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 153026600 153026600 G A GRIA1 Silent p.P121P 0.29 TCGA-FW-A3R5-06 5 153026646 153026646 C T GRIA1 Missense_Mutation p.P137S 0.12 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3R5-06 5 153030042 153030042 G A GRIA1 Missense_Mutation p.E215K 0.26 tolerated(0.07) possibly_damaging(0.486) TCGA-FW-A3R5-06 5 153054170 153054170 G A GRIA1 Nonsense_Mutation p.W280* 0.31 TCGA-FW-A3R5-06 5 153056708 153056708 G A GRIA1 Missense_Mutation p.R349K 0.20 tolerated(0.26) probably_damaging(0.995) TCGA-FW-A3R5-06 5 153077667 153077667 G A GRIA1 Missense_Mutation p.D410N 0.26 tolerated(0.18) benign(0.197) TCGA-FW-A3R5-06 5 153085278 153085278 C T GRIA1 Missense_Mutation p.P502S 0.24 deleterious(0.04) possibly_damaging(0.626) TCGA-FW-A3R5-06 5 153149829 153149829 G A GRIA1 Silent p.R718R 0.27 TCGA-FW-A3R5-06 5 153149857 153149857 C T GRIA1 Silent p.L728L 0.27 TCGA-FW-A3R5-06 5 153149867 153149867 C T GRIA1 Missense_Mutation p.T731I 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 153190713 153190713 C T GRIA1 Silent p.F893F 0.53 TCGA-FW-A3R5-06 5 153190831 153190831 G A GRIA1 3'UTR 0.31 TCGA-FW-A3R5-06 5 153765949 153765949 T C GALNT10 Silent p.L339L 0.30 TCGA-FW-A3R5-06 5 153855320 153855320 C T HAND1 3'UTR 0.25 TCGA-FW-A3R5-06 5 154183798 154183798 C T LARP1 Missense_Mutation p.P749L 0.28 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 5 154271117 154271117 G A GEMIN5 Nonsense_Mutation p.Q1316* 0.39 TCGA-FW-A3R5-06 5 154284151 154284151 G A GEMIN5 Missense_Mutation p.P850S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 154284938 154284938 G A GEMIN5 Missense_Mutation p.P832S 0.21 tolerated(0.24) benign(0.102) TCGA-FW-A3R5-06 5 154394039 154394039 C T KIF4B Missense_Mutation p.S207F 0.11 deleterious(0.01) possibly_damaging(0.774) TCGA-FW-A3R5-06 5 154394955 154394955 C T KIF4B Silent p.T512T 0.27 TCGA-FW-A3R5-06 5 154395381 154395381 G A KIF4B Missense_Mutation p.M654I 0.21 tolerated(0.09) possibly_damaging(0.87) TCGA-FW-A3R5-06 5 154395491 154395491 G A KIF4B Missense_Mutation p.R691K 0.31 tolerated(0.18) benign(0.076) TCGA-FW-A3R5-06 5 154395724 154395724 G A KIF4B Missense_Mutation p.E769K 0.30 deleterious(0.01) benign(0.394) TCGA-FW-A3R5-06 5 154396858 154396858 C T KIF4B Missense_Mutation p.P1147S 0.40 deleterious(0.05) probably_damaging(0.918) TCGA-FW-A3R5-06 5 154396866 154396866 G A KIF4B Silent p.E1149E 0.38 TCGA-FW-A3R5-06 5 155771593 155771593 G A SGCD Missense_Mutation p.R33Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 156195 156195 G A PLEKHG4B Missense_Mutation p.E384K 0.16 tolerated(0.14) possibly_damaging(0.797) TCGA-FW-A3R5-06 5 156378652 156378652 G A TIMD4 Nonsense_Mutation p.Q184* 0.23 TCGA-FW-A3R5-06 5 156378712 156378712 G A TIMD4 Missense_Mutation p.P164S 0.30 deleterious(0.04) benign(0.006) TCGA-FW-A3R5-06 5 156381657 156381657 C T TIMD4 Missense_Mutation p.D57N 0.33 deleterious(0.01) benign(0.396) TCGA-FW-A3R5-06 5 156476087 156476087 C T HAVCR1 Missense_Mutation p.R248K 0.30 tolerated(0.51) benign(0.001) TCGA-FW-A3R5-06 5 156479481 156479481 C T HAVCR1 Silent p.T188T 0.27 TCGA-FW-A3R5-06 5 156536097 156536097 G A HAVCR2 5'UTR 0.70 TCGA-FW-A3R5-06 5 156565725 156565725 G A MED7 3'UTR 0.24 TCGA-FW-A3R5-06 5 156589787 156589787 G A FAM71B Missense_Mutation p.R497C 0.08 deleterious(0) possibly_damaging(0.644) TCGA-FW-A3R5-06 5 156590485 156590485 C T FAM71B Missense_Mutation p.R264K 0.30 tolerated(1) benign(0.033) TCGA-FW-A3R5-06 5 156590670 156590670 C T FAM71B Splice_Site p.X203_splice 0.30 TCGA-FW-A3R5-06 5 156635959 156635959 G A ITK Silent p.V66V 0.12 TCGA-FW-A3R5-06 5 156667159 156667159 C T ITK Silent p.F313F 0.19 TCGA-FW-A3R5-06 5 156727806 156727806 C T CYFIP2 Silent p.Y131Y 0.31 TCGA-FW-A3R5-06 5 156727807 156727807 C T CYFIP2 Missense_Mutation p.L132F 0.31 deleterious(0.02) probably_damaging(0.953) TCGA-FW-A3R5-06 5 156741403 156741403 G A CYFIP2 Missense_Mutation p.E362K 0.31 tolerated(0.25) benign(0.009) TCGA-FW-A3R5-06 5 156742096 156742096 C T CYFIP2 Silent p.F424F 0.24 TCGA-FW-A3R5-06 5 156747679 156747679 C T CYFIP2 Nonsense_Mutation p.R488* 0.32 TCGA-FW-A3R5-06 5 156769792 156769792 C T FNDC9 3'UTR 0.16 TCGA-FW-A3R5-06 5 156770210 156770210 G A FNDC9 Missense_Mutation p.S112F 0.20 deleterious(0.03) probably_damaging(0.982) TCGA-FW-A3R5-06 5 156787340 156787340 C T CYFIP2 Silent p.P930P 0.31 TCGA-FW-A3R5-06 5 156816422 156816422 G A CYFIP2 Missense_Mutation p.E1119K 0.20 tolerated(0.09) possibly_damaging(0.746) TCGA-FW-A3R5-06 5 156820042 156820042 G A CYFIP2 3'UTR 0.31 TCGA-FW-A3R5-06 5 156899773 156899773 C T NIPAL4 Silent p.F402F 0.27 TCGA-FW-A3R5-06 5 156899784 156899784 C T NIPAL4 Missense_Mutation p.A406V 0.24 deleterious(0.05) benign(0.284) TCGA-FW-A3R5-06 5 156907843 156907843 G T ADAM19 3'UTR 0.38 TCGA-FW-A3R5-06 5 156907855 156907855 G A ADAM19 3'UTR 0.33 TCGA-FW-A3R5-06 5 156907936 156907936 G A ADAM19 3'UTR 0.18 TCGA-FW-A3R5-06 5 156915384 156915384 C T ADAM19 Silent p.R813R 0.31 TCGA-FW-A3R5-06 5 156916190 156916190 G A ADAM19 Missense_Mutation p.P749S 0.25 tolerated(0.2) possibly_damaging(0.625) TCGA-FW-A3R5-06 5 156924090 156924090 G A ADAM19 Missense_Mutation p.A469V 0.16 tolerated(0.4) probably_damaging(0.913) TCGA-FW-A3R5-06 5 156929952 156929952 C T ADAM19 Silent p.R389R 0.32 TCGA-FW-A3R5-06 5 156997953 156997953 C T ADAM19 Missense_Mutation p.E44K 0.30 deleterious(0) possibly_damaging(0.828) TCGA-FW-A3R5-06 5 158139206 158139206 G A EBF1 Missense_Mutation p.S502F 0.10 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-FW-A3R5-06 5 158500435 158500435 C T EBF1 Missense_Mutation p.E175K 0.34 deleterious(0.01) benign(0.36) TCGA-FW-A3R5-06 5 158524020 158524020 C T EBF1 Missense_Mutation p.E85K 0.11 deleterious(0.01) probably_damaging(0.939) TCGA-FW-A3R5-06 5 158526487 158526487 G A EBF1 5'UTR 0.27 TCGA-FW-A3R5-06 5 158609049 158609049 G A RNF145 Missense_Mutation p.R132W 0.18 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 5 158745790 158745790 G A IL12B Missense_Mutation p.S270F 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 5 158747383 158747383 C T IL12B Missense_Mutation p.V210I 0.08 tolerated(0.57) benign(0.003) TCGA-FW-A3R5-06 5 158750330 158750330 G A IL12B Silent p.V32V 0.29 TCGA-FW-A3R5-06 5 15928546 15928546 C T FBXL7 Silent p.I225I 0.23 TCGA-FW-A3R5-06 5 159344514 159344514 C T ADRA1B Missense_Mutation p.P201L 0.30 tolerated(0.06) probably_damaging(0.971) TCGA-FW-A3R5-06 5 15936779 15936779 G A FBXL7 Silent p.V320V 0.21 TCGA-FW-A3R5-06 5 15936890 15936890 C T FBXL7 Silent p.I357I 0.22 TCGA-FW-A3R5-06 5 15936978 15936978 G A FBXL7 Missense_Mutation p.E387K 0.21 deleterious(0.03) possibly_damaging(0.899) TCGA-FW-A3R5-06 5 15937163 15937163 C T FBXL7 Silent p.I448I 0.09 TCGA-FW-A3R5-06 5 15937308 15937308 C T FBXL7 3'UTR 0.73 TCGA-FW-A3R5-06 5 159492045 159492045 C T TTC1 Silent p.F284F 0.13 TCGA-FW-A3R5-06 5 159680709 159680709 G A CCNJL Silent p.F328F 0.28 TCGA-FW-A3R5-06 5 159707595 159707595 G A CCNJL Missense_Mutation p.R73C 0.18 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 5 159776031 159776031 G A C1QTNF2 3'UTR 0.25 TCGA-FW-A3R5-06 5 159821494 159821494 G A C5orf54 Missense_Mutation p.S335F 0.36 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 159831822 159831822 G A SLU7 Silent p.L486L 0.08 TCGA-FW-A3R5-06 5 159851296 159851296 C T PTTG1 Missense_Mutation p.A110V 0.06 tolerated(0.2) benign(0.024) TCGA-FW-A3R5-06 5 160016608 160016608 C T ATP10B Missense_Mutation p.M1247I 0.11 tolerated(0.12) benign(0.004) TCGA-FW-A3R5-06 5 160049500 160049500 C T ATP10B Silent p.K571K 0.32 TCGA-FW-A3R5-06 5 160059264 160059264 T A ATP10B Missense_Mutation p.S498C 0.11 deleterious(0.03) benign(0.015) TCGA-FW-A3R5-06 5 160113175 160113175 G A ATP10B Silent p.F127F 0.31 TCGA-FW-A3R5-06 5 160114869 160114869 G A ATP10B Silent p.T71T 0.23 TCGA-FW-A3R5-06 5 160114891 160114891 C T ATP10B Missense_Mutation p.R64K 0.06 tolerated(0.78) benign(0.013) TCGA-FW-A3R5-06 5 16067687 16067687 G A MARCH11 Nonsense_Mutation p.Q368* 0.26 TCGA-FW-A3R5-06 5 160721144 160721144 A G GABRB2 Missense_Mutation p.F495L 0.28 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 5 160721269 160721269 C T GABRB2 Missense_Mutation p.R453Q 0.32 deleterious(0.03) benign(0.298) TCGA-FW-A3R5-06 5 161116026 161116026 G A GABRA6 Silent p.E99E 0.23 TCGA-FW-A3R5-06 5 161119180 161119180 G A GABRA6 Missense_Mutation p.E354K 0.23 tolerated(0.71) benign(0.401) TCGA-FW-A3R5-06 5 161292786 161292786 C T GABRA1 Missense_Mutation p.H83Y 0.27 tolerated(0.17) benign(0.003) TCGA-FW-A3R5-06 5 161300263 161300263 G A GABRA1 Silent p.K132K 0.14 TCGA-FW-A3R5-06 5 161318012 161318012 C T GABRA1 Missense_Mutation p.S271F 0.19 deleterious(0) possibly_damaging(0.761) TCGA-FW-A3R5-06 5 161324243 161324243 G A GABRA1 Missense_Mutation p.E396K 0.15 tolerated(0.51) benign(0.178) TCGA-FW-A3R5-06 5 161524820 161524820 G A GABRG2 Silent p.R168R 0.29 TCGA-FW-A3R5-06 5 163581 163581 C T PLEKHG4B Missense_Mutation p.P776S 0.31 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 5 16463747 16463747 G A ZNF622 Missense_Mutation p.P244S 0.22 tolerated(0.19) benign(0.002) TCGA-FW-A3R5-06 5 167182018 167182018 G A TENM2 Intron 0.26 TCGA-FW-A3R5-06 5 167182137 167182137 G A TENM2 Intron 0.27 TCGA-FW-A3R5-06 5 167419974 167419974 G A TENM2 Missense_Mutation p.G325R 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 167489245 167489245 G A TENM2 Missense_Mutation p.R497K 0.31 tolerated(0.99) benign(0.001) TCGA-FW-A3R5-06 5 167517611 167517611 G A TENM2 Silent p.E516E 0.19 TCGA-FW-A3R5-06 5 167517659 167517659 C T TENM2 Silent p.T532T 0.24 TCGA-FW-A3R5-06 5 167525034 167525034 C T TENM2 Missense_Mutation p.S572L 0.21 tolerated(0.12) possibly_damaging(0.87) TCGA-FW-A3R5-06 5 167625888 167625888 C T TENM2 Silent p.S977S 0.18 TCGA-FW-A3R5-06 5 167626901 167626901 C T TENM2 Silent p.S1065S 0.08 TCGA-FW-A3R5-06 5 167645800 167645800 C T TENM2 Missense_Mutation p.S1635F 0.32 tolerated(0.09) benign(0.284) TCGA-FW-A3R5-06 5 167645876 167645876 C T TENM2 Silent p.T1660T 0.16 TCGA-FW-A3R5-06 5 167674013 167674013 G A TENM2 Silent p.G2023G 0.28 TCGA-FW-A3R5-06 5 167674097 167674097 G A TENM2 Missense_Mutation p.M2051I 0.29 deleterious(0) benign(0.138) TCGA-FW-A3R5-06 5 167674678 167674678 C T TENM2 Missense_Mutation p.P2245L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 167675204 167675204 C T TENM2 Silent p.T2420T 0.19 TCGA-FW-A3R5-06 5 167675260 167675260 C T TENM2 Missense_Mutation p.S2439F 0.27 deleterious(0) benign(0.243) TCGA-FW-A3R5-06 5 167689675 167689675 G A TENM2 Missense_Mutation p.E2729K 0.18 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 167882460 167882460 C T WWC1 Nonsense_Mutation p.R920* 0.16 TCGA-FW-A3R5-06 5 168093495 168093495 C T SLIT3 Silent p.E1512E 0.23 TCGA-FW-A3R5-06 5 168111061 168111061 C T SLIT3 Missense_Mutation p.G1199E 0.19 tolerated(0.08) benign(0.083) TCGA-FW-A3R5-06 5 168112721 168112721 C T SLIT3 Missense_Mutation p.V1176I 0.27 tolerated(0.63) benign(0.003) TCGA-FW-A3R5-06 5 168112740 168112740 C T SLIT3 Silent p.V1169V 0.25 TCGA-FW-A3R5-06 5 168114084 168114084 C T SLIT3 Missense_Mutation p.E1072K 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 5 168138055 168138055 C T SLIT3 Missense_Mutation p.G855E 0.21 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 5 168175434 168175434 C T SLIT3 Missense_Mutation p.E715K 0.14 tolerated(0.06) benign(0.001) TCGA-FW-A3R5-06 5 168176541 168176541 C T SLIT3 Silent p.Q691Q 0.30 TCGA-FW-A3R5-06 5 168180021 168180021 C T SLIT3 Missense_Mutation p.D638N 0.21 deleterious(0.02) probably_damaging(0.941) TCGA-FW-A3R5-06 5 168180980 168180980 C T SLIT3 Missense_Mutation p.R573Q 0.29 deleterious(0.01) possibly_damaging(0.836) TCGA-FW-A3R5-06 5 168180991 168180991 G A SLIT3 Silent p.I569I 0.42 TCGA-FW-A3R5-06 5 168199802 168199802 C T SLIT3 Silent p.K481K 0.24 TCGA-FW-A3R5-06 5 168212924 168212924 G A SLIT3 Missense_Mutation p.S380F 0.28 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 5 168244307 168244307 G A SLIT3 Missense_Mutation p.P264L 0.31 deleterious(0.04) benign(0.186) TCGA-FW-A3R5-06 5 168310314 168310314 C T SLIT3 Silent p.G147G 0.23 TCGA-FW-A3R5-06 5 168678406 168678406 C T SLIT3 Silent p.K85K 0.24 TCGA-FW-A3R5-06 5 168678418 168678418 G A SLIT3 Silent p.F81F 0.26 TCGA-FW-A3R5-06 5 168678436 168678436 C T SLIT3 Silent p.R75R 0.33 TCGA-FW-A3R5-06 5 169021292 169021292 C T SPDL1 Silent p.A225A 0.25 TCGA-FW-A3R5-06 5 169108797 169108797 G A DOCK2 Missense_Mutation p.D174N 0.23 tolerated(0.34) benign(0.323) TCGA-FW-A3R5-06 5 169111329 169111329 G A DOCK2 Missense_Mutation p.D246N 0.07 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 5 169116292 169116292 C T DOCK2 Silent p.F266F 0.23 TCGA-FW-A3R5-06 5 169127034 169127034 G A DOCK2 Missense_Mutation p.M383I 0.21 deleterious(0.01) benign(0.001) TCGA-FW-A3R5-06 5 169141143 169141143 G A DOCK2 Missense_Mutation p.G591R 0.30 deleterious(0.02) possibly_damaging(0.846) TCGA-FW-A3R5-06 5 169141144 169141144 G A DOCK2 Missense_Mutation p.G591E 0.30 deleterious(0.02) possibly_damaging(0.72) TCGA-FW-A3R5-06 5 169145710 169145710 G A DOCK2 Missense_Mutation p.E728K 0.35 tolerated(0.36) benign(0.046) TCGA-FW-A3R5-06 5 169412861 169412861 C T DOCK2 Silent p.F976F 0.25 TCGA-FW-A3R5-06 5 169494601 169494601 G A DOCK2 Missense_Mutation p.D1519N 0.22 deleterious(0.03) possibly_damaging(0.833) TCGA-FW-A3R5-06 5 169533045 169533045 G A FOXI1 Missense_Mutation p.M28I 0.24 deleterious(0.02) benign(0.03) TCGA-FW-A3R5-06 5 169533134 169533134 C T FOXI1 Missense_Mutation p.T58I 0.31 deleterious(0.01) benign(0.358) TCGA-FW-A3R5-06 5 169533142 169533142 C T FOXI1 Missense_Mutation p.P61S 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 169535587 169535587 T C FOXI1 Missense_Mutation p.L370P 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 169535588 169535588 C T FOXI1 Silent p.L370L 0.29 TCGA-FW-A3R5-06 5 169673121 169673121 C T C5orf58 3'UTR 0.28 TCGA-FW-A3R5-06 5 169720347 169720347 C T LCP2 Silent p.V36V 0.38 TCGA-FW-A3R5-06 5 169780949 169780949 C T KCNIP1 Silent p.I23I 0.29 TCGA-FW-A3R5-06 5 170145770 170145770 G A KCNIP1 Missense_Mutation p.E35K 0.44 deleterious(0.01) possibly_damaging(0.756) TCGA-FW-A3R5-06 5 170159870 170159870 G A KCNIP1 Missense_Mutation p.E179K 0.25 deleterious(0.01) benign(0.195) TCGA-FW-A3R5-06 5 170222320 170222320 G A GABRP Missense_Mutation p.V117M 0.29 deleterious(0.03) benign(0.273) TCGA-FW-A3R5-06 5 170235640 170235640 G A GABRP Missense_Mutation p.R239Q 0.26 tolerated(0.17) benign(0.014) TCGA-FW-A3R5-06 5 170236609 170236609 C T GABRP Silent p.I290I 0.08 TCGA-FW-A3R5-06 5 170239104 170239104 G A GABRP Missense_Mutation p.D389N 0.33 tolerated(0.45) benign(0.256) TCGA-FW-A3R5-06 5 170610362 170610362 C T RANBP17 Missense_Mutation p.H656Y 0.30 tolerated(1) benign(0) TCGA-FW-A3R5-06 5 170883572 170883572 C T FGF18 Silent p.F129F 0.27 TCGA-FW-A3R5-06 5 171318532 171318532 A T FBXW11 Missense_Mutation p.V243D 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 5 171520495 171520495 G A STK10 Missense_Mutation p.T492I 0.24 tolerated(0.27) benign(0.03) TCGA-FW-A3R5-06 5 171520744 171520744 G C STK10 Missense_Mutation p.P409R 0.13 deleterious(0.03) benign(0.373) TCGA-FW-A3R5-06 5 171765398 171765398 G A SH3PXD2B Missense_Mutation p.S904F 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 171765837 171765837 G A SH3PXD2B Missense_Mutation p.P758S 0.21 tolerated_low_confidence(0.09) benign(0.33) TCGA-FW-A3R5-06 5 171766709 171766709 G A SH3PXD2B Missense_Mutation p.S467F 0.29 deleterious(0.03) probably_damaging(0.934) TCGA-FW-A3R5-06 5 172396606 172396606 C T RPL26L1 3'UTR 0.31 TCGA-FW-A3R5-06 5 172571479 172571479 G A BNIP1 5'UTR 0.29 TCGA-FW-A3R5-06 5 172659505 172659505 C T NKX2-5 3'UTR 0.33 TCGA-FW-A3R5-06 5 173024 173024 G A PLEKHG4B Missense_Mutation p.E999K 0.30 deleterious(0) possibly_damaging(0.76) TCGA-FW-A3R5-06 5 173473792 173473792 G A NSG2 Missense_Mutation p.G12R 0.27 tolerated(0.08) possibly_damaging(0.694) TCGA-FW-A3R5-06 5 173531281 173531281 C T NSG2 Silent p.F88F 0.32 TCGA-FW-A3R5-06 5 17353944 17353944 G A CTD-2139B15.2 5'Flank 0.29 TCGA-FW-A3R5-06 5 174096 174096 C T PLEKHG4B Missense_Mutation p.R1073C 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-FW-A3R5-06 5 174156247 174156247 C T MSX2 Silent p.L155L 0.28 TCGA-FW-A3R5-06 5 174869243 174869243 G A DRD1 Missense_Mutation p.P287L 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 174940517 174940517 G A SFXN1 Silent p.G216G 0.34 TCGA-FW-A3R5-06 5 175110674 175110674 C T HRH2 Silent p.S146S 0.30 TCGA-FW-A3R5-06 5 175111263 175111263 C T HRH2 Nonsense_Mutation p.Q343* 0.25 TCGA-FW-A3R5-06 5 175572124 175572124 C T RP11-844P9.2 RNA 0.15 TCGA-FW-A3R5-06 5 175764149 175764149 G A SIMC1 Missense_Mutation p.E371K 0.17 tolerated(0.15) probably_damaging(0.947) TCGA-FW-A3R5-06 5 175793522 175793522 C T ARL10 Missense_Mutation p.P108L 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 175995723 175995723 C T CDHR2 Missense_Mutation p.P57S 0.16 tolerated(0.12) benign(0.009) TCGA-FW-A3R5-06 5 176003124 176003124 G A CDHR2 Missense_Mutation p.E378K 0.21 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 5 176008478 176008478 G A CDHR2 Silent p.E651E 0.26 TCGA-FW-A3R5-06 5 176011643 176011643 G A CDHR2 Silent p.G787G 0.09 TCGA-FW-A3R5-06 5 176016169 176016169 C T CDHR2 Silent p.F998F 0.27 TCGA-FW-A3R5-06 5 176022630 176022630 G A CDHR2 Missense_Mutation p.G1297E 0.29 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 5 176023779 176023779 G A GPRIN1 3'UTR 0.32 TCGA-FW-A3R5-06 5 176026534 176026534 G A GPRIN1 Missense_Mutation p.P101L 0.29 tolerated(0.08) possibly_damaging(0.728) TCGA-FW-A3R5-06 5 176056491 176056491 G A SNCB Intron 0.21 TCGA-FW-A3R5-06 5 176056599 176056599 C T SNCB Silent p.A19A 0.29 TCGA-FW-A3R5-06 5 176072431 176072431 G A EIF4E1B Silent p.G176G 0.25 TCGA-FW-A3R5-06 5 176295654 176295654 C T UNC5A Missense_Mutation p.P177S 0.33 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 5 176295655 176295655 C T UNC5A Missense_Mutation p.P177L 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 176304662 176304662 G A UNC5A Nonsense_Mutation p.W531* 0.24 TCGA-FW-A3R5-06 5 176306895 176306895 C T UNC5A 3'UTR 0.37 TCGA-FW-A3R5-06 5 176308482 176308482 G A HK3 Silent p.P816P 0.26 TCGA-FW-A3R5-06 5 176314308 176314308 C T HK3 Missense_Mutation p.G544E 0.33 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 176314494 176314494 G A HK3 Missense_Mutation p.R520C 0.35 deleterious(0.01) benign(0.273) TCGA-FW-A3R5-06 5 176378527 176378527 G A UIMC1 Missense_Mutation p.P464L 0.25 tolerated(0.29) benign(0.012) TCGA-FW-A3R5-06 5 176520147 176520147 C T FGFR4 Missense_Mutation p.P356S 0.31 tolerated(0.35) benign(0.021) TCGA-FW-A3R5-06 5 176520672 176520672 C G FGFR4 Missense_Mutation p.P472R 0.17 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 5 176524640 176524640 C T FGFR4 Missense_Mutation p.S791F 0.30 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 5 176696688 176696688 C T NSD1 Missense_Mutation p.L1797F 0.26 tolerated(0.27) benign(0.19) TCGA-FW-A3R5-06 5 176707784 176707784 C T NSD1 Silent p.F1947F 0.34 TCGA-FW-A3R5-06 5 176721426 176721426 C T NSD1 Missense_Mutation p.P2353S 0.23 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 5 176795904 176795904 C T RGS14 Silent p.L346L 0.28 TCGA-FW-A3R5-06 5 176798513 176798513 C T RGS14 Missense_Mutation p.P474L 0.16 tolerated(0.35) benign(0.001) TCGA-FW-A3R5-06 5 176798994 176798994 C T RGS14 Missense_Mutation p.S540F 0.09 deleterious(0.04) benign(0.219) TCGA-FW-A3R5-06 5 176812784 176812784 C T SLC34A1 Silent p.S14S 0.24 TCGA-FW-A3R5-06 5 176813028 176813028 C T SLC34A1 Silent p.P50P 0.35 TCGA-FW-A3R5-06 5 176820706 176820706 C T SLC34A1 Silent p.S316S 0.19 TCGA-FW-A3R5-06 5 176824006 176824006 C T SLC34A1 Silent p.I449I 0.27 TCGA-FW-A3R5-06 5 176831610 176831610 C T F12 Silent p.R230R 0.37 TCGA-FW-A3R5-06 5 176885201 176885201 T G DBN1 Missense_Mutation p.D547A 0.14 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 5 176914981 176914981 G A PDLIM7 Intron 0.33 TCGA-FW-A3R5-06 5 176931397 176931397 G A DOK3 Missense_Mutation p.P360S 0.13 deleterious(0.04) benign(0.421) TCGA-FW-A3R5-06 5 176951947 176951947 G A FAM193B Missense_Mutation p.P512L 0.50 tolerated(0.08) benign(0.199) TCGA-FW-A3R5-06 5 177419863 177419863 A T PROP1 Silent p.P176P 0.17 TCGA-FW-A3R5-06 5 177421114 177421114 C T PROP1 Missense_Mutation p.R112Q 0.27 deleterious(0) probably_damaging(0.918) TCGA-FW-A3R5-06 5 177473889 177473889 C T FAM153C Missense_Mutation p.S97F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-FW-A3R5-06 5 177474196 177474196 G A FAM153C Intron 0.27 TCGA-FW-A3R5-06 5 177675235 177675235 C T COL23A1 Silent p.G390G 0.32 TCGA-FW-A3R5-06 5 177686749 177686749 C T COL23A1 Splice_Site p.X235_splice 0.23 TCGA-FW-A3R5-06 5 177690298 177690298 C T COL23A1 Missense_Mutation p.G184R 0.28 deleterious(0) unknown(0) TCGA-FW-A3R5-06 5 177694313 177694313 G A COL23A1 Missense_Mutation p.P173S 0.14 tolerated(0.12) unknown(0) TCGA-FW-A3R5-06 5 178139858 178139858 G A ZNF354A Missense_Mutation p.L341F 0.34 tolerated(0.06) benign(0.065) TCGA-FW-A3R5-06 5 178140442 178140442 G A ZNF354A Missense_Mutation p.S146L 0.35 tolerated(0.48) benign(0.002) TCGA-FW-A3R5-06 5 178358763 178358763 G A ZFP2 Missense_Mutation p.R150K 0.31 tolerated(0.06) probably_damaging(0.997) TCGA-FW-A3R5-06 5 178392033 178392033 C T ZNF454 Missense_Mutation p.H210Y 0.19 tolerated(0.18) benign(0) TCGA-FW-A3R5-06 5 178392827 178392827 G A ZNF454 Silent p.E474E 0.35 TCGA-FW-A3R5-06 5 178409938 178409938 G A GRM6 Silent p.F803F 0.37 TCGA-FW-A3R5-06 5 178410064 178410064 G A GRM6 Silent p.L761L 0.26 TCGA-FW-A3R5-06 5 178410187 178410187 G A GRM6 Silent p.P720P 0.30 TCGA-FW-A3R5-06 5 178413680 178413680 C T GRM6 Silent p.G525G 0.22 TCGA-FW-A3R5-06 5 178416016 178416016 C T GRM6 Missense_Mutation p.G425E 0.16 tolerated(0.08) possibly_damaging(0.686) TCGA-FW-A3R5-06 5 178416045 178416045 G A GRM6 Silent p.L415L 0.35 TCGA-FW-A3R5-06 5 178416279 178416279 G A GRM6 Silent p.T380T 0.19 TCGA-FW-A3R5-06 5 178416282 178416282 G A GRM6 Silent p.S379S 0.35 TCGA-FW-A3R5-06 5 178417660 178417660 G A GRM6 Silent p.P315P 0.17 TCGA-FW-A3R5-06 5 178418886 178418886 G A GRM6 Nonsense_Mutation p.Q235* 0.29 TCGA-FW-A3R5-06 5 178418910 178418910 C T GRM6 Missense_Mutation p.E227K 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 178553105 178553105 G A ADAMTS2 Missense_Mutation p.R882C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 178554971 178554971 G A ADAMTS2 Missense_Mutation p.P869L 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-FW-A3R5-06 5 178555048 178555048 G A ADAMTS2 Silent p.V843V 0.09 TCGA-FW-A3R5-06 5 178555117 178555117 G A ADAMTS2 Silent p.V820V 0.24 TCGA-FW-A3R5-06 5 178556956 178556956 G A ADAMTS2 Missense_Mutation p.L812F 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 178557010 178557010 C T ADAMTS2 Missense_Mutation p.E794K 0.24 tolerated(0.08) probably_damaging(0.96) TCGA-FW-A3R5-06 5 178562966 178562966 C T ADAMTS2 Missense_Mutation p.G677R 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 178564819 178564819 G A ADAMTS2 Silent p.F634F 0.23 TCGA-FW-A3R5-06 5 178564848 178564848 C T ADAMTS2 Missense_Mutation p.E625K 0.38 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 5 178566888 178566888 C T ADAMTS2 Intron 0.30 TCGA-FW-A3R5-06 5 178585872 178585872 G A ADAMTS2 Silent p.S328S 0.24 TCGA-FW-A3R5-06 5 179044567 179044567 G A HNRNPH1 Silent p.F335F 0.35 TCGA-FW-A3R5-06 5 179193008 179193008 C T MAML1 Missense_Mutation p.P333S 0.33 tolerated(0.23) benign(0.088) TCGA-FW-A3R5-06 5 179302048 179302048 G A TBC1D9B Silent p.P680P 0.29 TCGA-FW-A3R5-06 5 179306689 179306689 G A TBC1D9B Missense_Mutation p.S452F 0.32 tolerated(0.05) possibly_damaging(0.635) TCGA-FW-A3R5-06 5 179563498 179563498 G A RASGEF1C Silent p.F106F 0.44 TCGA-FW-A3R5-06 5 179565072 179565072 G A RASGEF1C 5'UTR 0.21 TCGA-FW-A3R5-06 5 179728597 179728597 G A GFPT2 Silent p.P672P 0.20 TCGA-FW-A3R5-06 5 179739455 179739455 G A GFPT2 Silent p.I507I 0.28 TCGA-FW-A3R5-06 5 179745905 179745905 G A GFPT2 Silent p.I282I 0.38 TCGA-FW-A3R5-06 5 180036981 180036981 G A FLT4 Missense_Mutation p.A1244V 0.27 tolerated(0.27) benign(0) TCGA-FW-A3R5-06 5 180041160 180041160 C T FLT4 Nonsense_Mutation p.W1080* 0.27 TCGA-FW-A3R5-06 5 180043925 180043925 C T FLT4 Missense_Mutation p.G1024E 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 180048085 180048085 C T FLT4 Intron 0.23 TCGA-FW-A3R5-06 5 180048102 180048102 C T FLT4 Intron 0.23 TCGA-FW-A3R5-06 5 180048704 180048704 G A FLT4 Silent p.L620L 0.17 TCGA-FW-A3R5-06 5 180053204 180053204 C T FLT4 Missense_Mutation p.V389M 0.31 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 180056393 180056393 G A FLT4 Missense_Mutation p.S284F 0.33 deleterious(0.02) possibly_damaging(0.824) TCGA-FW-A3R5-06 5 180056987 180056987 C T FLT4 Missense_Mutation p.G211E 0.40 tolerated(0.17) benign(0.009) TCGA-FW-A3R5-06 5 180166987 180166987 C T OR2Y1 Silent p.E24E 0.25 TCGA-FW-A3R5-06 5 180335746 180335746 G A BTNL8 Silent p.G70G 0.34 TCGA-FW-A3R5-06 5 180338372 180338372 G A BTNL8 Missense_Mutation p.G144E 0.09 deleterious(0.02) benign(0.239) TCGA-FW-A3R5-06 5 180432565 180432565 G A BTNL3 Missense_Mutation p.G365E 0.23 tolerated(1) benign(0) TCGA-FW-A3R5-06 5 180432608 180432608 C T BTNL3 Silent p.V379V 0.20 TCGA-FW-A3R5-06 5 180582494 180582494 C T OR2V2 Silent p.S184S 0.18 TCGA-FW-A3R5-06 5 180582584 180582584 C T OR2V2 Silent p.I214I 0.11 TCGA-FW-A3R5-06 5 180625718 180625718 G T TRIM7 Silent p.V320V 0.19 TCGA-FW-A3R5-06 5 1879722 1879722 C T IRX4 Missense_Mutation p.R211Q 0.11 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 5 19473345 19473345 C T CDH18 Missense_Mutation p.R788K 0.24 tolerated(0.55) benign(0.037) TCGA-FW-A3R5-06 5 19473672 19473672 G A CDH18 Missense_Mutation p.P679L 0.34 tolerated(0.3) probably_damaging(0.999) TCGA-FW-A3R5-06 5 19473712 19473712 C T CDH18 Missense_Mutation p.E666K 0.25 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 5 19520786 19520786 C T CDH18 Missense_Mutation p.E498K 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 19544092 19544092 C T CDH18 Missense_Mutation p.E426K 0.44 deleterious(0.01) benign(0.006) TCGA-FW-A3R5-06 5 19571806 19571806 C T CDH18 Missense_Mutation p.E379K 0.20 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 5 19747261 19747261 C T CDH18 Missense_Mutation p.D105N 0.24 deleterious(0.02) possibly_damaging(0.452) TCGA-FW-A3R5-06 5 19839125 19839125 C T CDH18 5'UTR 0.25 TCGA-FW-A3R5-06 5 21755884 21755884 G A CDH12 Silent p.L567L 0.59 TCGA-FW-A3R5-06 5 22078775 22078775 C T CDH12 Missense_Mutation p.R4K 0.52 tolerated(0.27) possibly_damaging(0.745) TCGA-FW-A3R5-06 5 22142960 22142960 C T CDH12 Intron 0.38 TCGA-FW-A3R5-06 5 22143056 22143056 G A CDH12 Intron 0.15 TCGA-FW-A3R5-06 5 23522829 23522829 C T PRDM9 Silent p.A239A 0.20 TCGA-FW-A3R5-06 5 23522956 23522956 G A PRDM9 Missense_Mutation p.E282K 0.22 deleterious(0) benign(0.009) TCGA-FW-A3R5-06 5 23526574 23526574 G A PRDM9 Silent p.R459R 0.24 TCGA-FW-A3R5-06 5 23526958 23526958 G A PRDM9 Silent p.R587R 0.21 TCGA-FW-A3R5-06 5 23527037 23527037 G A PRDM9 Missense_Mutation p.G614R 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 5 23527500 23527500 G A PRDM9 Missense_Mutation p.R768K 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-FW-A3R5-06 5 24488152 24488152 C T CDH10 Missense_Mutation p.G663R 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 24488194 24488194 C T CDH10 Missense_Mutation p.D649N 0.18 tolerated(0.12) probably_damaging(0.989) TCGA-FW-A3R5-06 5 24488233 24488233 T G CDH10 Silent p.R636R 0.30 TCGA-FW-A3R5-06 5 24491771 24491771 G A CDH10 Missense_Mutation p.S597F 0.28 deleterious(0.04) probably_damaging(0.962) TCGA-FW-A3R5-06 5 24509770 24509770 G A CDH10 Silent p.S387S 0.32 TCGA-FW-A3R5-06 5 24509843 24509843 C T CDH10 Missense_Mutation p.G363E 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 5 24511603 24511603 G A CDH10 Missense_Mutation p.L279F 0.16 tolerated(0.08) benign(0.132) TCGA-FW-A3R5-06 5 24537774 24537774 C T CDH10 Missense_Mutation p.D81N 0.17 tolerated(0.18) probably_damaging(0.957) TCGA-FW-A3R5-06 5 26881391 26881391 C A CDH9 Missense_Mutation p.G742W 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 26881631 26881631 C T CDH9 Missense_Mutation p.E662K 0.36 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 5 26885831 26885831 C T CDH9 Missense_Mutation p.D592N 0.32 tolerated(0.06) probably_damaging(0.99) TCGA-FW-A3R5-06 5 26906074 26906074 G A CDH9 Missense_Mutation p.P269S 0.23 tolerated(0.16) benign(0.388) TCGA-FW-A3R5-06 5 26915838 26915838 C T CDH9 Silent p.P141P 0.27 TCGA-FW-A3R5-06 5 26988280 26988280 C T CDH9 Missense_Mutation p.G54D 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 5 26988470 26988470 C T CDH9 5'UTR 0.28 TCGA-FW-A3R5-06 5 31299723 31299723 C T CDH6 Missense_Mutation p.P266S 0.22 deleterious(0) possibly_damaging(0.523) TCGA-FW-A3R5-06 5 31302255 31302255 G A CDH6 Silent p.P283P 0.28 TCGA-FW-A3R5-06 5 31302378 31302378 C T CDH6 Silent p.T324T 0.25 TCGA-FW-A3R5-06 5 31317894 31317894 G A CDH6 Missense_Mutation p.G582E 0.30 tolerated(0.21) benign(0.006) TCGA-FW-A3R5-06 5 31317934 31317934 G A CDH6 Silent p.G595G 0.36 TCGA-FW-A3R5-06 5 31317955 31317955 G A CDH6 Silent p.A602A 0.28 TCGA-FW-A3R5-06 5 31322961 31322961 G A CDH6 Missense_Mutation p.R640Q 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-FW-A3R5-06 5 31466345 31466345 G A DROSHA Silent p.L804L 0.18 TCGA-FW-A3R5-06 5 32010529 32010529 G A PDZD2 Missense_Mutation p.E450K 0.15 tolerated(0.45) probably_damaging(0.998) TCGA-FW-A3R5-06 5 32059435 32059435 C T PDZD2 Missense_Mutation p.S764L 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 32087611 32087611 G A PDZD2 Missense_Mutation p.G1353R 0.20 tolerated(0.49) benign(0.016) TCGA-FW-A3R5-06 5 32090200 32090200 C G PDZD2 Missense_Mutation p.P2216A 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 5 32126481 32126481 G A GOLPH3 Missense_Mutation p.A245V 0.32 deleterious(0.02) benign(0.285) TCGA-FW-A3R5-06 5 32239246 32239246 G A MTMR12 Missense_Mutation p.S402F 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 32415222 32415222 G A ZFR Silent p.A212A 0.28 TCGA-FW-A3R5-06 5 32774912 32774912 G A NPR3 Silent p.G386G 0.34 TCGA-FW-A3R5-06 5 32789376 32789376 C T NPR3 3'UTR 0.28 TCGA-FW-A3R5-06 5 32789396 32789396 G A NPR3 3'UTR 0.29 TCGA-FW-A3R5-06 5 32789541 32789541 G A AC026703.1 Missense_Mutation p.E12K 0.27 possibly_damaging(0.486) TCGA-FW-A3R5-06 5 33467054 33467054 C T TARS Nonsense_Mutation p.R696* 0.34 TCGA-FW-A3R5-06 5 33549452 33549452 C T ADAMTS12 Missense_Mutation p.E1388K 0.13 deleterious(0.01) possibly_damaging(0.852) TCGA-FW-A3R5-06 5 33576177 33576177 G A ADAMTS12 Silent p.I1318I 0.31 TCGA-FW-A3R5-06 5 33576383 33576383 G A ADAMTS12 Missense_Mutation p.P1250S 0.24 tolerated(0.22) benign(0.007) TCGA-FW-A3R5-06 5 33624341 33624341 C T ADAMTS12 Missense_Mutation p.G713E 0.22 deleterious(0.02) possibly_damaging(0.856) TCGA-FW-A3R5-06 5 33881335 33881335 G A ADAMTS12 Silent p.L126L 0.24 TCGA-FW-A3R5-06 5 33891923 33891923 G A ADAMTS12 Silent p.S13S 0.34 TCGA-FW-A3R5-06 5 33964098 33964098 G A SLC45A2 Missense_Mutation p.L196F 0.20 deleterious(0.03) possibly_damaging(0.795) TCGA-FW-A3R5-06 5 34043182 34043182 G A C1QTNF3 Missense_Mutation p.L17F 0.26 deleterious_low_confidence(0) benign(0.366) TCGA-FW-A3R5-06 5 34043265 34043265 G T C1QTNF3 5'UTR 0.31 TCGA-FW-A3R5-06 5 34945064 34945064 C T DNAJC21 Missense_Mutation p.P359L 0.26 tolerated(0.65) benign(0.005) TCGA-FW-A3R5-06 5 35010173 35010173 C T AGXT2 Missense_Mutation p.E424K 0.32 tolerated(1) benign(0.1) TCGA-FW-A3R5-06 5 35025869 35025869 T C AGXT2 Missense_Mutation p.E321G 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 35033608 35033608 C T AGXT2 Missense_Mutation p.G211E 0.23 deleterious(0.01) benign(0.371) TCGA-FW-A3R5-06 5 35065373 35065373 C T PRLR Missense_Mutation p.D563N 0.18 tolerated(0.1) benign(0.037) TCGA-FW-A3R5-06 5 35065427 35065427 C T PRLR Missense_Mutation p.E545K 0.19 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 5 35065523 35065523 G A PRLR Missense_Mutation p.H513Y 0.33 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 5 35065757 35065757 C T PRLR Missense_Mutation p.D435N 0.13 deleterious(0.02) benign(0.209) TCGA-FW-A3R5-06 5 35084740 35084740 C T PRLR Missense_Mutation p.E69K 0.27 deleterious(0.04) benign(0.039) TCGA-FW-A3R5-06 5 35654817 35654817 G A SPEF2 Missense_Mutation p.E323K 0.17 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 5 35667306 35667306 G A SPEF2 Missense_Mutation p.D434N 0.30 tolerated(0.16) probably_damaging(0.931) TCGA-FW-A3R5-06 5 35700677 35700677 C T SPEF2 Missense_Mutation p.L741F 0.24 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 5 35709136 35709136 C T SPEF2 Missense_Mutation p.P918S 0.23 tolerated(0.14) benign(0.006) TCGA-FW-A3R5-06 5 35709163 35709163 G A SPEF2 Missense_Mutation p.E927K 0.07 tolerated(0.49) benign(0.368) TCGA-FW-A3R5-06 5 35740337 35740337 G A SPEF2 Missense_Mutation p.E1100K 0.31 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 5 35753829 35753829 G A SPEF2 Missense_Mutation p.G1145E 0.16 deleterious(0.03) possibly_damaging(0.796) TCGA-FW-A3R5-06 5 35771777 35771777 G A SPEF2 Missense_Mutation p.E1290K 0.41 tolerated(0.07) benign(0.437) TCGA-FW-A3R5-06 5 35774065 35774065 G A SPEF2 Silent p.R1340R 0.12 TCGA-FW-A3R5-06 5 35779419 35779419 G A SPEF2 Missense_Mutation p.R1473Q 0.12 tolerated(0.32) benign(0.243) TCGA-FW-A3R5-06 5 35806986 35806986 G A SPEF2 Missense_Mutation p.G1730R 0.29 deleterious(0.02) possibly_damaging(0.878) TCGA-FW-A3R5-06 5 35857032 35857032 C T IL7R 5'UTR 0.31 TCGA-FW-A3R5-06 5 35857148 35857148 C T IL7R Silent p.G23G 0.33 TCGA-FW-A3R5-06 5 35874645 35874645 G A IL7R Splice_Site p.X267_splice 0.23 TCGA-FW-A3R5-06 5 35876232 35876232 G A IL7R Missense_Mutation p.G342R 0.29 tolerated(0.29) benign(0.077) TCGA-FW-A3R5-06 5 35876418 35876418 C T IL7R Missense_Mutation p.L404F 0.25 tolerated(0.23) probably_damaging(0.971) TCGA-FW-A3R5-06 5 35876420 35876420 C T IL7R Silent p.L404L 0.37 TCGA-FW-A3R5-06 5 35904588 35904588 G A CAPSL 3'UTR 0.27 TCGA-FW-A3R5-06 5 35910131 35910131 C T CAPSL Missense_Mutation p.R121K 0.24 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 5 35910613 35910613 C T CAPSL Missense_Mutation p.R57Q 0.23 deleterious(0.03) benign(0.055) TCGA-FW-A3R5-06 5 35954365 35954365 C T UGT3A1 Missense_Mutation p.G504E 0.32 tolerated(0.31) benign(0.303) TCGA-FW-A3R5-06 5 35965699 35965699 G A UGT3A1 Missense_Mutation p.S211F 0.36 tolerated(0.77) benign(0.062) TCGA-FW-A3R5-06 5 36035837 36035837 C T UGT3A2 Nonsense_Mutation p.W512* 0.20 TCGA-FW-A3R5-06 5 36036035 36036035 G A UGT3A2 Missense_Mutation p.S446F 0.20 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 36036043 36036043 G A UGT3A2 Silent p.I443I 0.22 TCGA-FW-A3R5-06 5 36116684 36116684 G A LMBRD2 Silent p.F438F 0.12 TCGA-FW-A3R5-06 5 36117840 36117840 G A LMBRD2 Silent p.I433I 0.35 TCGA-FW-A3R5-06 5 36124361 36124361 G A LMBRD2 Missense_Mutation p.R252C 0.25 deleterious(0.01) possibly_damaging(0.79) TCGA-FW-A3R5-06 5 36253876 36253876 C T RANBP3L Missense_Mutation p.G372D 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 36257174 36257174 C T RANBP3L Splice_Site p.X283_splice 0.19 TCGA-FW-A3R5-06 5 36271373 36271373 C T RANBP3L Silent p.K44K 0.12 TCGA-FW-A3R5-06 5 36301496 36301496 C T RANBP3L Missense_Mutation p.G8D 0.18 tolerated_low_confidence(0.19) benign(0.005) TCGA-FW-A3R5-06 5 36677252 36677252 G A SLC1A3 Missense_Mutation p.E276K 0.36 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 5 36679919 36679919 G A SLC1A3 Missense_Mutation p.G351R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 37000603 37000603 C T NIPBL Missense_Mutation p.R1145C 0.13 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 5 37044568 37044568 C T NIPBL Silent p.L2076L 0.08 TCGA-FW-A3R5-06 5 37120378 37120378 G A C5orf42 Missense_Mutation p.P3030S 0.36 tolerated(0.3) possibly_damaging(0.465) TCGA-FW-A3R5-06 5 37153991 37153991 G A C5orf42 Missense_Mutation p.P2688S 0.16 tolerated(0.06) benign(0.012) TCGA-FW-A3R5-06 5 37164388 37164388 G A C5orf42 Silent p.F2525F 0.31 TCGA-FW-A3R5-06 5 38370509 38370509 G A EGFLAM Missense_Mutation p.M219I 0.15 tolerated_low_confidence(0.15) benign(0.002) TCGA-FW-A3R5-06 5 38403905 38403905 G A EGFLAM Intron 0.26 TCGA-FW-A3R5-06 5 38406338 38406338 G A EGFLAM Missense_Mutation p.E275K 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.881) TCGA-FW-A3R5-06 5 38407199 38407199 C T EGFLAM Silent p.G366G 0.27 TCGA-FW-A3R5-06 5 38407248 38407248 G A EGFLAM Missense_Mutation p.D383N 0.27 tolerated(0.08) possibly_damaging(0.71) TCGA-FW-A3R5-06 5 38412636 38412636 C T EGFLAM Silent p.I460I 0.34 TCGA-FW-A3R5-06 5 38445684 38445684 G A EGFLAM Intron 0.27 TCGA-FW-A3R5-06 5 38451424 38451424 G A EGFLAM Missense_Mutation p.G859R 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 38451527 38451527 C T EGFLAM Missense_Mutation p.S893F 0.26 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 5 38481797 38481797 G A LIFR Missense_Mutation p.S1065F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 38482250 38482250 C T LIFR Missense_Mutation p.R914Q 0.32 tolerated(0.52) benign(0.007) TCGA-FW-A3R5-06 5 38484966 38484966 C T LIFR Silent p.V834V 0.16 TCGA-FW-A3R5-06 5 38485983 38485983 C T LIFR Missense_Mutation p.R812Q 0.24 tolerated(0.39) benign(0.022) TCGA-FW-A3R5-06 5 38493843 38493843 G A LIFR Missense_Mutation p.L644F 0.24 tolerated(0.69) benign(0.002) TCGA-FW-A3R5-06 5 38523620 38523620 G A LIFR Silent p.Y154Y 0.14 TCGA-FW-A3R5-06 5 38876376 38876376 C T OSMR Silent p.H49H 0.17 TCGA-FW-A3R5-06 5 38884057 38884057 G A OSMR Missense_Mutation p.G183R 0.20 tolerated(0.25) benign(0.035) TCGA-FW-A3R5-06 5 38886150 38886150 G A OSMR Silent p.G283G 0.32 TCGA-FW-A3R5-06 5 38924684 38924684 G A OSMR Silent p.K677K 0.27 TCGA-FW-A3R5-06 5 38925448 38925448 G A OSMR Silent p.T729T 0.08 TCGA-FW-A3R5-06 5 38950815 38950815 G A RICTOR Silent p.F1045F 0.29 TCGA-FW-A3R5-06 5 38963059 38963059 G A RICTOR Silent p.D495D 0.25 TCGA-FW-A3R5-06 5 38967280 38967280 G A RICTOR Missense_Mutation p.R401C 0.30 deleterious(0.02) benign(0.347) TCGA-FW-A3R5-06 5 39134430 39134430 G A FYB Missense_Mutation p.A576V 0.27 tolerated(1) probably_damaging(0.973) TCGA-FW-A3R5-06 5 39202124 39202124 G A FYB Silent p.F323F 0.28 TCGA-FW-A3R5-06 5 39202753 39202753 C T FYB Missense_Mutation p.E114K 0.28 deleterious(0.05) possibly_damaging(0.642) TCGA-FW-A3R5-06 5 39331857 39331857 C T C9 Missense_Mutation p.G179E 0.24 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 5 39331902 39331902 C T C9 Missense_Mutation p.G164E 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 39364589 39364589 G A C9 5'UTR 0.29 TCGA-FW-A3R5-06 5 39377166 39377166 G A DAB2 Missense_Mutation p.P575S 0.31 tolerated(0.43) benign(0.005) TCGA-FW-A3R5-06 5 39382856 39382856 G A DAB2 Missense_Mutation p.P402L 0.25 tolerated(0.06) benign(0.271) TCGA-FW-A3R5-06 5 39382857 39382857 G A DAB2 Missense_Mutation p.P402S 0.24 tolerated(0.31) benign(0.019) TCGA-FW-A3R5-06 5 39394370 39394370 G A DAB2 Missense_Mutation p.A18V 0.34 tolerated(0.07) possibly_damaging(0.611) TCGA-FW-A3R5-06 5 40852889 40852889 C T CARD6 Silent p.I485I 0.20 TCGA-FW-A3R5-06 5 40853444 40853444 C T CARD6 Silent p.S670S 0.29 TCGA-FW-A3R5-06 5 40854284 40854284 C T CARD6 Silent p.S950S 0.29 TCGA-FW-A3R5-06 5 40854424 40854424 C T CARD6 Missense_Mutation p.P997L 0.26 deleterious(0) possibly_damaging(0.655) TCGA-FW-A3R5-06 5 40945418 40945418 C T C7 Missense_Mutation p.S229L 0.27 deleterious(0.04) benign(0.2) TCGA-FW-A3R5-06 5 40964869 40964869 G A C7 Silent p.G592G 0.29 TCGA-FW-A3R5-06 5 41004453 41004453 C T MROH2B Missense_Mutation p.E1397K 0.34 deleterious(0.01) probably_damaging(0.963) TCGA-FW-A3R5-06 5 41004526 41004526 G A MROH2B Silent p.I1372I 0.23 TCGA-FW-A3R5-06 5 41004579 41004579 G A MROH2B Missense_Mutation p.H1355Y 0.30 deleterious(0.03) probably_damaging(0.935) TCGA-FW-A3R5-06 5 41008721 41008721 G A MROH2B Missense_Mutation p.P1199S 0.36 tolerated(0.49) benign(0.009) TCGA-FW-A3R5-06 5 41009435 41009435 C T MROH2B Missense_Mutation p.D1123N 0.27 tolerated(0.08) benign(0.444) TCGA-FW-A3R5-06 5 41012789 41012789 C T MROH2B Missense_Mutation p.E1011K 0.22 tolerated(0.09) possibly_damaging(0.754) TCGA-FW-A3R5-06 5 41015551 41015551 C T MROH2B Missense_Mutation p.G972S 0.26 tolerated(0.99) benign(0.002) TCGA-FW-A3R5-06 5 41019027 41019027 C T MROH2B Silent p.L845L 0.27 TCGA-FW-A3R5-06 5 41038970 41038970 C T MROH2B Silent p.K694K 0.27 TCGA-FW-A3R5-06 5 41045878 41045878 C T MROH2B Missense_Mutation p.M602I 0.25 tolerated(0.14) benign(0.007) TCGA-FW-A3R5-06 5 41142899 41142899 C T C6 3'UTR 0.35 TCGA-FW-A3R5-06 5 41142988 41142988 C T C6 Missense_Mutation p.G915E 0.28 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 5 41143071 41143071 C T C6 Silent p.Q887Q 0.29 TCGA-FW-A3R5-06 5 41153949 41153949 C T C6 Nonsense_Mutation p.W751* 0.12 TCGA-FW-A3R5-06 5 41159280 41159280 C T C6 Missense_Mutation p.R587Q 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 41160355 41160355 G A C6 Missense_Mutation p.P525S 0.26 deleterious(0) possibly_damaging(0.694) TCGA-FW-A3R5-06 5 41161795 41161795 C T C6 Silent p.E486E 0.21 TCGA-FW-A3R5-06 5 41161881 41161881 C T C6 Missense_Mutation p.E458K 0.24 deleterious(0.02) possibly_damaging(0.589) TCGA-FW-A3R5-06 5 41161948 41161948 C T C6 Silent p.Q435Q 0.30 TCGA-FW-A3R5-06 5 41181551 41181551 G A C6 Silent p.F279F 0.33 TCGA-FW-A3R5-06 5 41181646 41181646 C T C6 Missense_Mutation p.D248N 0.21 deleterious(0.02) possibly_damaging(0.669) TCGA-FW-A3R5-06 5 41203238 41203238 C T C6 Nonsense_Mutation p.W32* 0.08 TCGA-FW-A3R5-06 5 41382208 41382208 C T PLCXD3 Missense_Mutation p.E178K 0.09 tolerated(0.36) benign(0.115) TCGA-FW-A3R5-06 5 41510716 41510716 C T PLCXD3 5'Flank 0.36 TCGA-FW-A3R5-06 5 41929924 41929924 C T FBXO4 Missense_Mutation p.P184L 0.26 deleterious(0.02) probably_damaging(0.974) TCGA-FW-A3R5-06 5 42695102 42695102 C T GHR Missense_Mutation p.S117L 0.26 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 5 42711363 42711363 G A GHR Missense_Mutation p.E225K 0.14 tolerated(0.09) probably_damaging(0.994) TCGA-FW-A3R5-06 5 42718224 42718224 G A GHR Splice_Site p.X315_splice 0.32 TCGA-FW-A3R5-06 5 42719313 42719313 C T GHR Silent p.T568T 0.20 TCGA-FW-A3R5-06 5 42719404 42719404 C T GHR Missense_Mutation p.H599Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 42719541 42719541 C T GHR 3'UTR 0.24 TCGA-FW-A3R5-06 5 42719673 42719673 G A GHR 3'UTR 0.25 TCGA-FW-A3R5-06 5 42807045 42807045 G A SEPP1 Silent p.V123V 0.29 TCGA-FW-A3R5-06 5 42807211 42807211 C T SEPP1 Splice_Site p.X68_splice 0.30 TCGA-FW-A3R5-06 5 43246021 43246021 C T NIM1K Silent p.F48F 0.17 TCGA-FW-A3R5-06 5 43280253 43280253 G A NIM1K Missense_Mutation p.E245K 0.29 tolerated(0.49) benign(0.008) TCGA-FW-A3R5-06 5 43298724 43298724 G A HMGCS1 Missense_Mutation p.S115F 0.28 deleterious(0.03) probably_damaging(0.959) TCGA-FW-A3R5-06 5 43412406 43412406 C T CCL28 Missense_Mutation p.G5R 0.13 tolerated(0.52) probably_damaging(0.998) TCGA-FW-A3R5-06 5 43446355 43446355 G A C5orf28 Missense_Mutation p.S206F 0.14 deleterious(0) benign(0.056) TCGA-FW-A3R5-06 5 45262033 45262033 G A HCN1 Missense_Mutation p.S888L 0.17 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-FW-A3R5-06 5 45303824 45303824 C T HCN1 Missense_Mutation p.G499R 0.20 deleterious(0.02) possibly_damaging(0.804) TCGA-FW-A3R5-06 5 45461956 45461956 C T HCN1 Missense_Mutation p.E335K 0.30 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 5 45645491 45645491 C T HCN1 Missense_Mutation p.M215I 0.21 tolerated(0.36) probably_damaging(0.968) TCGA-FW-A3R5-06 5 45645535 45645535 C T HCN1 Missense_Mutation p.E201K 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 5 45645662 45645662 G A HCN1 Silent p.V158V 0.31 TCGA-FW-A3R5-06 5 45695845 45695845 C T HCN1 Silent p.Q117Q 0.21 TCGA-FW-A3R5-06 5 457111 457111 C T EXOC3 Missense_Mutation p.S385F 0.16 tolerated(0.06) possibly_damaging(0.833) TCGA-FW-A3R5-06 5 484774 484774 C T SLC9A3 Missense_Mutation p.G265R 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 484775 484775 C T SLC9A3 Silent p.V264V 0.29 TCGA-FW-A3R5-06 5 49694973 49694973 C T EMB 3'UTR 0.31 TCGA-FW-A3R5-06 5 49699234 49699234 C T EMB Missense_Mutation p.E219K 0.13 tolerated(0.14) possibly_damaging(0.69) TCGA-FW-A3R5-06 5 49701640 49701640 C T EMB Silent p.G173G 0.37 TCGA-FW-A3R5-06 5 50055509 50055509 G A PARP8 Missense_Mutation p.E73K 0.16 deleterious_low_confidence(0.03) benign(0.285) TCGA-FW-A3R5-06 5 50055532 50055532 G A PARP8 Silent p.E80E 0.08 TCGA-FW-A3R5-06 5 50056163 50056163 C T PARP8 Silent p.S104S 0.14 TCGA-FW-A3R5-06 5 50058997 50058997 G A PARP8 Missense_Mutation p.E147K 0.21 deleterious(0.02) possibly_damaging(0.827) TCGA-FW-A3R5-06 5 50090791 50090791 C T PARP8 Missense_Mutation p.S323F 0.23 tolerated_low_confidence(0.17) benign(0.439) TCGA-FW-A3R5-06 5 50090851 50090851 C T PARP8 Missense_Mutation p.S343F 0.24 deleterious_low_confidence(0.01) benign(0.367) TCGA-FW-A3R5-06 5 50111267 50111267 C T PARP8 Missense_Mutation p.P526L 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-FW-A3R5-06 5 50118201 50118201 G A PARP8 Silent p.L609L 0.30 TCGA-FW-A3R5-06 5 50137939 50137939 C T PARP8 3'UTR 0.29 TCGA-FW-A3R5-06 5 50137970 50137970 G A PARP8 3'UTR 0.28 TCGA-FW-A3R5-06 5 50679518 50679518 G A ISL1 Missense_Mutation p.G5R 0.28 tolerated(0.06) probably_damaging(0.972) TCGA-FW-A3R5-06 5 50689453 50689453 C T ISL1 3'UTR 0.34 TCGA-FW-A3R5-06 5 5182205 5182205 C T ADAMTS16 Missense_Mutation p.P184S 0.30 tolerated(0.14) possibly_damaging(0.789) TCGA-FW-A3R5-06 5 52096834 52096834 A T PELO Silent p.V202V 0.35 TCGA-FW-A3R5-06 5 52177838 52177838 G A ITGA1 Missense_Mutation p.G253E 0.16 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 5 52211401 52211401 C T ITGA1 Silent p.G655G 0.34 TCGA-FW-A3R5-06 5 52240817 52240817 G A ITGA1 Silent p.R1110R 0.10 TCGA-FW-A3R5-06 5 5235148 5235148 C T ADAMTS16 Silent p.F624F 0.29 TCGA-FW-A3R5-06 5 5235236 5235236 G A ADAMTS16 Missense_Mutation p.E654K 0.26 deleterious(0.01) possibly_damaging(0.734) TCGA-FW-A3R5-06 5 52353881 52353881 C T ITGA2 Nonsense_Mutation p.Q375* 0.24 TCGA-FW-A3R5-06 5 52361784 52361784 C T ITGA2 Silent p.A640A 0.27 TCGA-FW-A3R5-06 5 52367790 52367790 C T ITGA2 Missense_Mutation p.S753F 0.30 deleterious(0) possibly_damaging(0.83) TCGA-FW-A3R5-06 5 52371064 52371064 G A ITGA2 Missense_Mutation p.E919K 0.33 deleterious(0.04) benign(0.156) TCGA-FW-A3R5-06 5 52374652 52374652 C T ITGA2 Missense_Mutation p.S959L 0.29 deleterious(0.02) possibly_damaging(0.474) TCGA-FW-A3R5-06 5 5239360 5239360 C T ADAMTS16 Missense_Mutation p.L751F 0.20 tolerated(0.49) benign(0.033) TCGA-FW-A3R5-06 5 52394456 52394456 C A MOCS2 Missense_Mutation p.E181D 0.26 deleterious(0.03) possibly_damaging(0.751) TCGA-FW-A3R5-06 5 5239910 5239910 G A ADAMTS16 Missense_Mutation p.G799R 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 52781760 52781760 C T FST Intron 0.35 TCGA-FW-A3R5-06 5 52978999 52978999 C T NDUFS4 Missense_Mutation p.S159F 0.18 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 5 54277897 54277897 C T ESM1 Missense_Mutation p.G127R 0.30 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 5 54277898 54277898 C T ESM1 Silent p.T126T 0.30 TCGA-FW-A3R5-06 5 54281334 54281334 G A ESM1 Silent p.V4V 0.14 TCGA-FW-A3R5-06 5 54326282 54326282 C T GZMK Missense_Mutation p.P78L 0.23 tolerated(0.68) benign(0.009) TCGA-FW-A3R5-06 5 54403622 54403622 G A GZMA Silent p.L72L 0.23 TCGA-FW-A3R5-06 5 54403991 54403991 C T GZMA Silent p.I132I 0.17 TCGA-FW-A3R5-06 5 54405889 54405889 G A GZMA Missense_Mutation p.R223Q 0.31 deleterious(0.03) probably_damaging(0.91) TCGA-FW-A3R5-06 5 54416286 54416286 C T CDC20B Silent p.G436G 0.31 TCGA-FW-A3R5-06 5 54420804 54420804 G A CDC20B Missense_Mutation p.H348Y 0.30 tolerated(0.05) benign(0.007) TCGA-FW-A3R5-06 5 54429267 54429267 G A CDC20B Missense_Mutation p.H224Y 0.21 deleterious(0.01) benign(0.223) TCGA-FW-A3R5-06 5 54570741 54570741 G A DHX29 Missense_Mutation p.P842L 0.25 deleterious(0.03) benign(0.205) TCGA-FW-A3R5-06 5 54577320 54577320 G A DHX29 Silent p.I663I 0.19 TCGA-FW-A3R5-06 5 5457778 5457778 C T KIAA0947 Missense_Mutation p.P342L 0.07 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 5457844 5457844 C T KIAA0947 Missense_Mutation p.S364L 0.24 tolerated(0.25) benign(0.108) TCGA-FW-A3R5-06 5 54639208 54639208 C T SKIV2L2 Silent p.V277V 0.22 TCGA-FW-A3R5-06 5 54771130 54771130 G A PPAP2A Intron 0.32 TCGA-FW-A3R5-06 5 54922345 54922345 G A SLC38A9 Silent p.L555L 0.28 TCGA-FW-A3R5-06 5 54929585 54929585 G A SLC38A9 Missense_Mutation p.P476L 0.31 deleterious(0) possibly_damaging(0.816) TCGA-FW-A3R5-06 5 55056065 55056065 G A DDX4 Missense_Mutation p.M55I 0.30 tolerated_low_confidence(0.45) benign(0.027) TCGA-FW-A3R5-06 5 55195914 55195914 G A IL31RA Silent p.G341G 0.09 TCGA-FW-A3R5-06 5 55202068 55202068 C A IL31RA Missense_Mutation p.L402I 0.30 tolerated(0.43) benign(0.03) TCGA-FW-A3R5-06 5 55202097 55202097 G A IL31RA Silent p.T411T 0.31 TCGA-FW-A3R5-06 5 55210706 55210706 C T IL31RA Missense_Mutation p.P590S 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 55395931 55395931 C T ANKRD55 3'UTR 0.27 TCGA-FW-A3R5-06 5 59899274 59899274 G A DEPDC1B Missense_Mutation p.P396S 0.26 deleterious(0.01) possibly_damaging(0.45) TCGA-FW-A3R5-06 5 60067763 60067763 G A ELOVL7 Silent p.F74F 0.30 TCGA-FW-A3R5-06 5 60067864 60067864 G A ELOVL7 Silent p.L41L 0.42 TCGA-FW-A3R5-06 5 61654077 61654077 C T KIF2A Missense_Mutation p.R275C 0.13 tolerated(0.12) probably_damaging(0.988) TCGA-FW-A3R5-06 5 61659025 61659025 G A KIF2A Silent p.R380R 0.24 TCGA-FW-A3R5-06 5 61669557 61669557 C T KIF2A Missense_Mutation p.R602C 0.17 deleterious(0.03) possibly_damaging(0.742) TCGA-FW-A3R5-06 5 61745770 61745770 G A IPO11 Missense_Mutation p.E126K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 5 61778959 61778959 C T IPO11 Missense_Mutation p.S327L 0.41 deleterious(0.02) possibly_damaging(0.736) TCGA-FW-A3R5-06 5 63256380 63256380 G A HTR1A Silent p.G389G 0.21 TCGA-FW-A3R5-06 5 63256409 63256409 G A HTR1A Silent p.L380L 0.24 TCGA-FW-A3R5-06 5 63256493 63256493 C T HTR1A Missense_Mutation p.G352S 0.12 tolerated(0.06) probably_damaging(0.936) TCGA-FW-A3R5-06 5 63256494 63256494 C T HTR1A Missense_Mutation p.M351I 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-FW-A3R5-06 5 63257495 63257495 G A HTR1A Missense_Mutation p.P18S 0.22 tolerated_low_confidence(0.7) benign(0.001) TCGA-FW-A3R5-06 5 6337369 6337369 G A CTD-2324F15.2 RNA 0.35 TCGA-FW-A3R5-06 5 63509401 63509401 G A RNF180 Missense_Mutation p.G83E 0.30 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 5 64273001 64273001 C T CWC27 Nonsense_Mutation p.Q398* 0.21 TCGA-FW-A3R5-06 5 64447723 64447723 G A ADAMTS6 Silent p.F1098F 0.14 TCGA-FW-A3R5-06 5 64466525 64466525 C T ADAMTS6 Missense_Mutation p.D1055N 0.14 tolerated(0.17) benign(0.014) TCGA-FW-A3R5-06 5 64466530 64466530 G A ADAMTS6 Missense_Mutation p.S1053F 0.33 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 5 64483905 64483905 C T ADAMTS6 Missense_Mutation p.E950K 0.27 tolerated(0.82) benign(0.122) TCGA-FW-A3R5-06 5 64484025 64484025 C T ADAMTS6 Missense_Mutation p.E910K 0.21 tolerated(0.58) benign(0.145) TCGA-FW-A3R5-06 5 64595811 64595811 C T ADAMTS6 Splice_Site p.X457_splice 0.29 TCGA-FW-A3R5-06 5 64748576 64748576 G A ADAMTS6 Silent p.G267G 0.25 TCGA-FW-A3R5-06 5 64756126 64756126 C T ADAMTS6 Missense_Mutation p.E168K 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 64769444 64769444 C T ADAMTS6 Silent p.S19S 0.26 TCGA-FW-A3R5-06 5 66460536 66460536 C T MAST4 Silent p.L1843L 0.28 TCGA-FW-A3R5-06 5 66462294 66462294 G A MAST4 Silent p.T2429T 0.43 TCGA-FW-A3R5-06 5 66478830 66478830 C T CD180 Missense_Mutation p.R614K 0.32 tolerated(1) benign(0) TCGA-FW-A3R5-06 5 66479210 66479210 C T CD180 Silent p.T487T 0.29 TCGA-FW-A3R5-06 5 66479639 66479639 G A CD180 Silent p.F344F 0.28 TCGA-FW-A3R5-06 5 66479913 66479913 C T CD180 Missense_Mutation p.G253E 0.29 deleterious(0.03) possibly_damaging(0.858) TCGA-FW-A3R5-06 5 6750520 6750520 C T PAPD7 Silent p.P338P 0.30 TCGA-FW-A3R5-06 5 6753012 6753012 C T PAPD7 Silent p.T432T 0.30 TCGA-FW-A3R5-06 5 67576471 67576471 C T PIK3R1 Silent p.L250L 0.26 TCGA-FW-A3R5-06 5 67593452 67593452 T A PIK3R1 3'UTR 0.08 TCGA-FW-A3R5-06 5 68492933 68492933 C T CENPH Missense_Mutation p.S123F 0.19 tolerated(0.11) benign(0.004) TCGA-FW-A3R5-06 5 68505701 68505701 C T CENPH 3'UTR 0.50 TCGA-FW-A3R5-06 5 68677778 68677778 G A RAD17 Silent p.T145T 0.24 TCGA-FW-A3R5-06 5 68737434 68737434 C T MARVELD2 Nonsense_Mutation p.Q544* 0.23 TCGA-FW-A3R5-06 5 68800117 68800117 G A OCLN Missense_Mutation p.E16K 0.33 tolerated(0.12) probably_damaging(0.917) TCGA-FW-A3R5-06 5 68840756 68840756 C T OCLN Missense_Mutation p.P355S 0.27 tolerated(0.09) possibly_damaging(0.908) TCGA-FW-A3R5-06 5 70308413 70308413 C T NAIP Silent p.T110T 0.18 TCGA-FW-A3R5-06 5 70818641 70818641 C T BDP1 Missense_Mutation p.S1751F 0.26 deleterious(0.04) probably_damaging(0.939) TCGA-FW-A3R5-06 5 70952707 70952707 C T MCCC2 3'UTR 0.27 TCGA-FW-A3R5-06 5 71479591 71479591 G A MAP1B Missense_Mutation p.R103Q 0.25 unknown(0) TCGA-FW-A3R5-06 5 71482455 71482455 C T MAP1B Silent p.I128I 0.24 TCGA-FW-A3R5-06 5 71490409 71490409 C T MAP1B Silent p.V409V 0.20 TCGA-FW-A3R5-06 5 71491387 71491387 C T MAP1B Silent p.L735L 0.36 TCGA-FW-A3R5-06 5 71495309 71495309 G A MAP1B Missense_Mutation p.E2043K 0.21 probably_damaging(0.939) TCGA-FW-A3R5-06 5 71495547 71495547 C T MAP1B Missense_Mutation p.P2122L 0.30 benign(0.028) TCGA-FW-A3R5-06 5 71496142 71496142 C G MAP1B Silent p.T2320T 0.30 TCGA-FW-A3R5-06 5 71616244 71616244 C T PTCD2 Missense_Mutation p.P12L 0.20 tolerated(0.24) benign(0.005) TCGA-FW-A3R5-06 5 71740108 71740108 C T ZNF366 Silent p.R570R 0.39 TCGA-FW-A3R5-06 5 71756137 71756137 G A ZNF366 Missense_Mutation p.S396F 0.21 deleterious(0.01) possibly_damaging(0.841) TCGA-FW-A3R5-06 5 71756783 71756783 G A ZNF366 Missense_Mutation p.H181Y 0.26 tolerated_low_confidence(0.11) benign(0.003) TCGA-FW-A3R5-06 5 71756965 71756965 G A ZNF366 Missense_Mutation p.P120L 0.29 deleterious_low_confidence(0.05) benign(0.213) TCGA-FW-A3R5-06 5 72469120 72469120 C T TMEM174 Missense_Mutation p.S17F 0.11 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 5 72469290 72469290 C T TMEM174 Missense_Mutation p.L74F 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 5 72469386 72469386 G A TMEM174 Missense_Mutation p.E106K 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 5 72469404 72469404 G A TMEM174 Missense_Mutation p.E112K 0.31 deleterious(0.01) benign(0.443) TCGA-FW-A3R5-06 5 73045661 73045661 G A ARHGEF28 Splice_Site p.X12_splice 0.23 TCGA-FW-A3R5-06 5 73045805 73045805 C T ARHGEF28 Silent p.V59V 0.17 TCGA-FW-A3R5-06 5 73128174 73128174 G A ARHGEF28 Missense_Mutation p.D346N 0.14 deleterious(0.02) possibly_damaging(0.83) TCGA-FW-A3R5-06 5 73142151 73142151 C T ARHGEF28 Missense_Mutation p.H496Y 0.22 tolerated(0.3) benign(0.009) TCGA-FW-A3R5-06 5 73169046 73169046 G A ARHGEF28 Missense_Mutation p.R930Q 0.22 tolerated(0.17) benign(0.195) TCGA-FW-A3R5-06 5 74100324 74100324 C T FAM169A Silent p.Q302Q 0.26 TCGA-FW-A3R5-06 5 74643088 74643088 C T HMGCR Silent p.L170L 0.28 TCGA-FW-A3R5-06 5 74655281 74655281 C T HMGCR Missense_Mutation p.P786L 0.12 tolerated(0.14) benign(0.006) TCGA-FW-A3R5-06 5 75581606 75581606 G A SV2C Missense_Mutation p.V350I 0.28 tolerated(0.46) benign(0.006) TCGA-FW-A3R5-06 5 75596679 75596679 C T SV2C Silent p.L588L 0.18 TCGA-FW-A3R5-06 5 75597272 75597272 C T SV2C Silent p.S634S 0.18 TCGA-FW-A3R5-06 5 75621375 75621375 G A SV2C 3'UTR 0.24 TCGA-FW-A3R5-06 5 75621376 75621376 G A SV2C 3'UTR 0.25 TCGA-FW-A3R5-06 5 75866417 75866417 C T IQGAP2 Missense_Mutation p.H106Y 0.23 deleterious(0) possibly_damaging(0.881) TCGA-FW-A3R5-06 5 75886311 75886311 C T IQGAP2 Missense_Mutation p.P240L 0.40 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 5 75888726 75888726 C T IQGAP2 Nonsense_Mutation p.Q295* 0.30 TCGA-FW-A3R5-06 5 75914387 75914387 C T F2RL2 Missense_Mutation p.E49K 0.28 tolerated(0.08) possibly_damaging(0.507) TCGA-FW-A3R5-06 5 75927692 75927692 C T IQGAP2 Silent p.L541L 0.14 TCGA-FW-A3R5-06 5 75969356 75969356 C T IQGAP2 Silent p.L1051L 0.08 TCGA-FW-A3R5-06 5 75978949 75978949 G A IQGAP2 Missense_Mutation p.E1224K 0.28 deleterious(0.04) benign(0.033) TCGA-FW-A3R5-06 5 75991451 75991451 C T IQGAP2 Missense_Mutation p.S1389F 0.32 deleterious(0.01) possibly_damaging(0.835) TCGA-FW-A3R5-06 5 75993946 75993946 G A IQGAP2 Silent p.K1447K 0.28 TCGA-FW-A3R5-06 5 76029030 76029030 G A F2R Missense_Mutation p.G327E 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 5 76128799 76128799 C T F2RL1 Missense_Mutation p.L123F 0.19 deleterious(0) possibly_damaging(0.525) TCGA-FW-A3R5-06 5 76173582 76173582 C T S100Z Silent p.F75F 0.08 TCGA-FW-A3R5-06 5 76249004 76249004 C T CRHBP Silent p.F15F 0.27 TCGA-FW-A3R5-06 5 76342274 76342274 C T AGGF1 Missense_Mutation p.H325Y 0.08 deleterious(0.03) benign(0.11) TCGA-FW-A3R5-06 5 76348532 76348532 T A AGGF1 Missense_Mutation p.F456Y 0.12 tolerated(0.07) probably_damaging(0.993) TCGA-FW-A3R5-06 5 76627229 76627229 C T PDE8B Missense_Mutation p.S218L 0.21 tolerated(0.39) benign(0.005) TCGA-FW-A3R5-06 5 76715603 76715603 G A PDE8B Missense_Mutation p.R714Q 0.29 deleterious(0.02) probably_damaging(0.972) TCGA-FW-A3R5-06 5 76989169 76989169 G A TBCA Silent p.I56I 0.12 TCGA-FW-A3R5-06 5 77316575 77316575 G A AP3B1 Missense_Mutation p.P978L 0.26 deleterious(0.01) possibly_damaging(0.713) TCGA-FW-A3R5-06 5 77425034 77425034 G A AP3B1 Missense_Mutation p.P583L 0.24 deleterious(0.01) possibly_damaging(0.459) TCGA-FW-A3R5-06 5 78322274 78322274 C T DMGDH Silent p.E721E 0.31 TCGA-FW-A3R5-06 5 78328593 78328593 C T DMGDH Silent p.L478L 0.15 TCGA-FW-A3R5-06 5 78340139 78340139 C T DMGDH Missense_Mutation p.G328R 0.31 deleterious(0.02) possibly_damaging(0.896) TCGA-FW-A3R5-06 5 78340231 78340231 G A DMGDH Missense_Mutation p.S297L 0.28 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 5 78347272 78347272 G A DMGDH Missense_Mutation p.P195S 0.29 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 5 78376586 78376586 G A BHMT2 Missense_Mutation p.G112E 0.27 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 5 78379475 78379475 G A BHMT2 Missense_Mutation p.R269K 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 78379618 78379618 G A BHMT2 Missense_Mutation p.E317K 0.37 tolerated(0.13) benign(0.01) TCGA-FW-A3R5-06 5 78411722 78411722 G A BHMT Missense_Mutation p.V56I 0.17 deleterious(0.05) benign(0.322) TCGA-FW-A3R5-06 5 78415084 78415084 C T BHMT Missense_Mutation p.R57C 0.22 deleterious(0.03) benign(0.443) TCGA-FW-A3R5-06 5 78421875 78421875 C T BHMT Missense_Mutation p.S211F 0.21 deleterious(0) benign(0.042) TCGA-FW-A3R5-06 5 78608307 78608307 C T JMY Nonsense_Mutation p.R684* 0.20 TCGA-FW-A3R5-06 5 78672008 78672008 G A HOMER1 Missense_Mutation p.R297W 0.28 deleterious(0) possibly_damaging(0.506) TCGA-FW-A3R5-06 5 78915544 78915544 C T PAPD4 Silent p.L25L 0.24 TCGA-FW-A3R5-06 5 79024751 79024751 G A CMYA5 Missense_Mutation p.D55N 0.33 possibly_damaging(0.811) TCGA-FW-A3R5-06 5 79025987 79025987 G A CMYA5 Missense_Mutation p.E467K 0.24 possibly_damaging(0.636) TCGA-FW-A3R5-06 5 79026326 79026326 G A CMYA5 Missense_Mutation p.E580K 0.26 possibly_damaging(0.811) TCGA-FW-A3R5-06 5 79026768 79026768 C T CMYA5 Missense_Mutation p.S727F 0.32 possibly_damaging(0.902) TCGA-FW-A3R5-06 5 79026783 79026783 C T CMYA5 Missense_Mutation p.P732L 0.25 benign(0) TCGA-FW-A3R5-06 5 79028721 79028721 C T CMYA5 Missense_Mutation p.S1378F 0.34 benign(0.36) TCGA-FW-A3R5-06 5 79028820 79028820 C T CMYA5 Missense_Mutation p.S1411L 0.24 benign(0.001) TCGA-FW-A3R5-06 5 79029900 79029900 C T CMYA5 Missense_Mutation p.P1771L 0.29 benign(0.227) TCGA-FW-A3R5-06 5 79030039 79030039 C T CMYA5 Silent p.L1817L 0.21 TCGA-FW-A3R5-06 5 79031330 79031330 G A CMYA5 Missense_Mutation p.E2248K 0.29 benign(0.001) TCGA-FW-A3R5-06 5 79031688 79031688 G A CMYA5 Missense_Mutation p.R2367K 0.24 benign(0.054) TCGA-FW-A3R5-06 5 79031795 79031795 G A CMYA5 Missense_Mutation p.E2403K 0.24 possibly_damaging(0.677) TCGA-FW-A3R5-06 5 79032165 79032165 G A CMYA5 Missense_Mutation p.R2526K 0.29 benign(0.425) TCGA-FW-A3R5-06 5 79033081 79033081 G A CMYA5 Silent p.V2831V 0.30 TCGA-FW-A3R5-06 5 79351739 79351739 G A THBS4 Missense_Mutation p.E142K 0.25 tolerated(0.13) benign(0.067) TCGA-FW-A3R5-06 5 79441966 79441966 G A SERINC5 Silent p.F395F 0.11 TCGA-FW-A3R5-06 5 79498730 79498730 G A SERINC5 Missense_Mutation p.T57I 0.27 deleterious(0) possibly_damaging(0.789) TCGA-FW-A3R5-06 5 79733273 79733273 C T ZFYVE16 Missense_Mutation p.H257Y 0.22 deleterious(0) benign(0.026) TCGA-FW-A3R5-06 5 79854699 79854699 G A ANKRD34B Silent p.T380T 0.30 TCGA-FW-A3R5-06 5 80366371 80366371 G A RASGRF2 Missense_Mutation p.E202K 0.31 deleterious(0.01) possibly_damaging(0.696) TCGA-FW-A3R5-06 5 80419559 80419559 C T RASGRF2 Missense_Mutation p.R857W 0.26 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-FW-A3R5-06 5 80550833 80550833 G A CKMT2 Missense_Mutation p.E157K 0.31 tolerated(0.22) possibly_damaging(0.697) TCGA-FW-A3R5-06 5 80555016 80555016 G A CKMT2 Silent p.S319S 0.07 TCGA-FW-A3R5-06 5 80626086 80626086 C T ACOT12 3'UTR 0.38 TCGA-FW-A3R5-06 5 80626166 80626166 G A ACOT12 3'UTR 0.15 TCGA-FW-A3R5-06 5 80626663 80626663 G A ACOT12 Silent p.L496L 0.08 TCGA-FW-A3R5-06 5 80631636 80631636 G A ACOT12 Missense_Mutation p.R405C 0.24 tolerated(0.18) benign(0.004) TCGA-FW-A3R5-06 5 80769541 80769541 C T SSBP2 Missense_Mutation p.G183E 0.29 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 5 81601097 81601097 C T ATP6AP1L 5'UTR 0.41 TCGA-FW-A3R5-06 5 82785996 82785996 T C VCAN Silent p.P50P 0.38 TCGA-FW-A3R5-06 5 82807962 82807962 C T VCAN Silent p.F263F 0.25 TCGA-FW-A3R5-06 5 82815175 82815175 G A VCAN Silent p.E350E 0.31 TCGA-FW-A3R5-06 5 82816544 82816544 G A VCAN Missense_Mutation p.E807K 0.13 deleterious(0.03) benign(0.266) TCGA-FW-A3R5-06 5 82834003 82834003 G A VCAN Silent p.E1727E 0.27 TCGA-FW-A3R5-06 5 82834819 82834819 C T VCAN Silent p.F1999F 0.28 TCGA-FW-A3R5-06 5 82834820 82834820 C T VCAN Missense_Mutation p.P2000S 0.28 tolerated(0.54) benign(0.214) TCGA-FW-A3R5-06 5 82835440 82835440 C T VCAN Silent p.F2206F 0.26 TCGA-FW-A3R5-06 5 82835853 82835853 C T VCAN Missense_Mutation p.P2344L 0.21 tolerated(0.19) benign(0.356) TCGA-FW-A3R5-06 5 82836319 82836319 C T VCAN Silent p.S2499S 0.13 TCGA-FW-A3R5-06 5 82837305 82837305 C T VCAN Missense_Mutation p.P2828L 0.14 tolerated(0.16) benign(0.071) TCGA-FW-A3R5-06 5 82837306 82837306 C T VCAN Silent p.P2828P 0.14 TCGA-FW-A3R5-06 5 82837421 82837421 G A VCAN Missense_Mutation p.E2867K 0.23 tolerated(0.05) benign(0.073) TCGA-FW-A3R5-06 5 82837712 82837712 G A VCAN Missense_Mutation p.D2964N 0.29 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 5 82937540 82937540 G A HAPLN1 Silent p.L280L 0.29 TCGA-FW-A3R5-06 5 82940393 82940393 G A HAPLN1 Silent p.I188I 0.28 TCGA-FW-A3R5-06 5 83433134 83433134 C T EDIL3 Missense_Mutation p.G132R 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 5 83549998 83549998 C T EDIL3 Missense_Mutation p.G34R 0.33 deleterious(0) probably_damaging(0.913) TCGA-FW-A3R5-06 5 843767 843767 G A ZDHHC11 Silent p.L192L 0.21 TCGA-FW-A3R5-06 5 850777 850777 C T ZDHHC11 5'UTR 0.24 TCGA-FW-A3R5-06 5 893150 893150 C T TRIP13 Missense_Mutation p.P13S 0.38 tolerated_low_confidence(0.05) benign(0.008) TCGA-FW-A3R5-06 5 89757138 89757138 G A MBLAC2 Missense_Mutation p.P229L 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 89924433 89924433 G A GPR98 Silent p.A431A 0.22 TCGA-FW-A3R5-06 5 89925077 89925077 T G GPR98 Missense_Mutation p.F520L 0.20 benign(0) TCGA-FW-A3R5-06 5 89925205 89925205 G A GPR98 Missense_Mutation p.G563E 0.17 probably_damaging(0.972) TCGA-FW-A3R5-06 5 89938713 89938713 G A GPR98 Missense_Mutation p.G803E 0.28 probably_damaging(0.972) TCGA-FW-A3R5-06 5 89939773 89939773 G A GPR98 Missense_Mutation p.E903K 0.22 possibly_damaging(0.636) TCGA-FW-A3R5-06 5 89939785 89939785 G A GPR98 Missense_Mutation p.D907N 0.19 possibly_damaging(0.811) TCGA-FW-A3R5-06 5 89941791 89941791 G A GPR98 Missense_Mutation p.E969K 0.21 possibly_damaging(0.636) TCGA-FW-A3R5-06 5 89943398 89943398 G A GPR98 Missense_Mutation p.V1036I 0.23 possibly_damaging(0.739) TCGA-FW-A3R5-06 5 89948163 89948163 G A GPR98 Nonsense_Mutation p.W1139* 0.26 TCGA-FW-A3R5-06 5 89949407 89949407 C T GPR98 Missense_Mutation p.T1339I 0.34 probably_damaging(0.961) TCGA-FW-A3R5-06 5 89949435 89949435 G A GPR98 Silent p.R1348R 0.28 TCGA-FW-A3R5-06 5 89949527 89949527 G A GPR98 Missense_Mutation p.G1379E 0.17 probably_damaging(0.993) TCGA-FW-A3R5-06 5 89953918 89953918 C T GPR98 Silent p.F1525F 0.26 TCGA-FW-A3R5-06 5 89968486 89968486 G A GPR98 Missense_Mutation p.D1626N 0.33 probably_damaging(0.989) TCGA-FW-A3R5-06 5 89971131 89971131 C T GPR98 Missense_Mutation p.P1728S 0.36 probably_damaging(0.992) TCGA-FW-A3R5-06 5 89979796 89979796 G A GPR98 Missense_Mutation p.D2020N 0.27 possibly_damaging(0.562) TCGA-FW-A3R5-06 5 89979993 89979993 G A GPR98 Silent p.A2085A 0.34 TCGA-FW-A3R5-06 5 89985834 89985834 G A GPR98 Missense_Mutation p.G2216E 0.40 probably_damaging(0.972) TCGA-FW-A3R5-06 5 89999523 89999523 C T GPR98 Nonsense_Mutation p.R2733* 0.28 TCGA-FW-A3R5-06 5 90008191 90008191 C T GPR98 Nonsense_Mutation p.Q3044* 0.25 TCGA-FW-A3R5-06 5 90012335 90012335 A C GPR98 Missense_Mutation p.N3079T 0.10 probably_damaging(0.932) TCGA-FW-A3R5-06 5 90016011 90016011 G A GPR98 Silent p.G3198G 0.46 TCGA-FW-A3R5-06 5 90016808 90016808 G A GPR98 Missense_Mutation p.R3227Q 0.32 benign(0.105) TCGA-FW-A3R5-06 5 90020763 90020763 C T GPR98 Missense_Mutation p.S3288F 0.29 possibly_damaging(0.831) TCGA-FW-A3R5-06 5 90024714 90024714 G A GPR98 Missense_Mutation p.D3464N 0.32 possibly_damaging(0.811) TCGA-FW-A3R5-06 5 90025464 90025464 C T GPR98 Nonsense_Mutation p.Q3478* 0.19 TCGA-FW-A3R5-06 5 90049587 90049587 C A GPR98 Missense_Mutation p.P3773H 0.16 probably_damaging(0.99) TCGA-FW-A3R5-06 5 90052277 90052277 C T GPR98 Missense_Mutation p.L3863F 0.28 benign(0.009) TCGA-FW-A3R5-06 5 90077323 90077323 C T GPR98 Missense_Mutation p.R4387C 0.29 probably_damaging(0.965) TCGA-FW-A3R5-06 5 90079864 90079864 G A GPR98 Missense_Mutation p.G4548E 0.33 probably_damaging(0.994) TCGA-FW-A3R5-06 5 90086735 90086735 C T GPR98 Missense_Mutation p.L4697F 0.31 benign(0.18) TCGA-FW-A3R5-06 5 90119263 90119263 C T GPR98 Silent p.V5406V 0.28 TCGA-FW-A3R5-06 5 90281242 90281242 G A GPR98 Missense_Mutation p.G6019R 0.23 probably_damaging(0.995) TCGA-FW-A3R5-06 5 90281262 90281262 G A GPR98 Silent p.V6025V 0.12 TCGA-FW-A3R5-06 5 90398133 90398133 C T GPR98 Silent p.L6136L 0.27 TCGA-FW-A3R5-06 5 90459638 90459638 G A GPR98 Missense_Mutation p.G6281D 0.25 probably_damaging(0.959) TCGA-FW-A3R5-06 5 9052063 9052063 G A SEMA5A Silent p.L923L 0.28 TCGA-FW-A3R5-06 5 9066649 9066649 C T SEMA5A Missense_Mutation p.R728Q 0.32 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 5 9119182 9119182 C T SEMA5A Missense_Mutation p.R618Q 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 5 9197355 9197355 G A SEMA5A Silent p.F331F 0.31 TCGA-FW-A3R5-06 5 92923983 92923983 C T NR2F1 Missense_Mutation p.P275L 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-FW-A3R5-06 5 92924027 92924027 G A NR2F1 Missense_Mutation p.D290N 0.20 deleterious(0.02) possibly_damaging(0.477) TCGA-FW-A3R5-06 5 9337875 9337875 G A SEMA5A Silent p.F58F 0.20 TCGA-FW-A3R5-06 5 93856513 93856513 G A KIAA0825 Missense_Mutation p.S137F 0.24 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 5 94114841 94114841 C T MCTP1 Missense_Mutation p.E862K 0.19 deleterious(0.04) possibly_damaging(0.625) TCGA-FW-A3R5-06 5 94204131 94204131 C T MCTP1 Missense_Mutation p.M781I 0.22 deleterious(0) benign(0.019) TCGA-FW-A3R5-06 5 94224659 94224659 G A MCTP1 Missense_Mutation p.H620Y 0.31 tolerated(0.34) benign(0.065) TCGA-FW-A3R5-06 5 94288954 94288954 A G MCTP1 Missense_Mutation p.V317A 0.18 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 5 94353077 94353077 G A MCTP1 Nonsense_Mutation p.R278* 0.32 TCGA-FW-A3R5-06 5 94749806 94749806 G A FAM81B Missense_Mutation p.R150Q 0.34 tolerated(1) benign(0.025) TCGA-FW-A3R5-06 5 94772575 94772575 G A FAM81B Silent p.G286G 0.27 TCGA-FW-A3R5-06 5 94772593 94772593 G A FAM81B Missense_Mutation p.M292I 0.24 tolerated(0.18) benign(0.002) TCGA-FW-A3R5-06 5 94786107 94786107 G A FAM81B 3'UTR 0.32 TCGA-FW-A3R5-06 5 94878997 94878997 G A TTC37 Missense_Mutation p.A42V 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 5 94994441 94994441 C T SPATA9 Silent p.P217P 0.34 TCGA-FW-A3R5-06 5 95018270 95018270 C T SPATA9 Missense_Mutation p.E38K 0.24 deleterious(0.01) benign(0.359) TCGA-FW-A3R5-06 5 95748146 95748146 G A PCSK1 Missense_Mutation p.S253L 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 5 95764944 95764944 G A PCSK1 Silent p.I86I 0.32 TCGA-FW-A3R5-06 5 9629337 9629337 G A TAS2R1 Missense_Mutation p.P270S 0.26 tolerated(0.09) probably_damaging(0.913) TCGA-FW-A3R5-06 5 9630150 9630150 G A TAS2R1 5'UTR 0.22 TCGA-FW-A3R5-06 5 96332162 96332162 C T LNPEP Silent p.F492F 0.17 TCGA-FW-A3R5-06 6 100390947 100390947 C T MCHR2 Silent p.L155L 0.30 TCGA-FW-A3R5-06 6 100841514 100841514 C T SIM1 Silent p.E473E 0.10 TCGA-FW-A3R5-06 6 102337514 102337514 G A GRIK2 Splice_Site p.X509_splice 0.20 TCGA-FW-A3R5-06 6 102337651 102337651 C T GRIK2 Missense_Mutation p.S554F 0.32 deleterious(0) probably_damaging(0.969) TCGA-FW-A3R5-06 6 102337662 102337662 C T GRIK2 Missense_Mutation p.P558S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 102376371 102376371 C T GRIK2 Missense_Mutation p.S650L 0.46 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 102483436 102483436 C T GRIK2 Missense_Mutation p.P769L 0.40 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 102516458 102516458 G A GRIK2 3'UTR 0.36 TCGA-FW-A3R5-06 6 10410431 10410431 G A TFAP2A Silent p.P61P 0.25 TCGA-FW-A3R5-06 6 105198317 105198317 G A HACE1 Nonsense_Mutation p.R748* 0.40 TCGA-FW-A3R5-06 6 105219820 105219820 G A HACE1 Missense_Mutation p.S665F 0.37 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 6 105549067 105549067 C T BVES Missense_Mutation p.R327Q 0.37 deleterious_low_confidence(0.02) benign(0.372) TCGA-FW-A3R5-06 6 105609583 105609583 C T POPDC3 Missense_Mutation p.A68T 0.44 deleterious(0) possibly_damaging(0.706) TCGA-FW-A3R5-06 6 106543539 106543539 G A PRDM1 Missense_Mutation p.G114E 0.54 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 106552875 106552875 C T PRDM1 Silent p.L280L 0.18 TCGA-FW-A3R5-06 6 106554835 106554835 G A PRDM1 Missense_Mutation p.R651Q 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 106968913 106968913 C T AIM1 Missense_Mutation p.S869F 0.38 deleterious(0) possibly_damaging(0.839) TCGA-FW-A3R5-06 6 107019899 107019899 C T RTN4IP1 Missense_Mutation p.R388Q 0.38 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 6 107019950 107019950 G A RTN4IP1 Missense_Mutation p.P371L 0.33 deleterious(0.03) benign(0.248) TCGA-FW-A3R5-06 6 107019951 107019951 G A RTN4IP1 Missense_Mutation p.P371S 0.35 tolerated(0.45) benign(0.011) TCGA-FW-A3R5-06 6 107232091 107232091 C T MIR587 RNA 0.29 TCGA-FW-A3R5-06 6 10730979 10730979 A G TMEM14C 3'UTR 0.38 TCGA-FW-A3R5-06 6 10796537 10796537 C T MAK Silent p.L279L 0.19 TCGA-FW-A3R5-06 6 108489317 108489317 C T NR2E1 Intron 0.27 TCGA-FW-A3R5-06 6 108499402 108499402 C T NR2E1 Missense_Mutation p.A200V 0.40 tolerated(0.09) benign(0.058) TCGA-FW-A3R5-06 6 10876198 10876198 C T GCM2 Missense_Mutation p.A170T 0.28 deleterious(0) possibly_damaging(0.53) TCGA-FW-A3R5-06 6 10876690 10876690 C T GCM2 Silent p.A148A 0.22 TCGA-FW-A3R5-06 6 109190152 109190152 C T ARMC2 Silent p.A139A 0.36 TCGA-FW-A3R5-06 6 109249363 109249363 C T ARMC2 Missense_Mutation p.P475S 0.14 tolerated(0.57) benign(0.257) TCGA-FW-A3R5-06 6 10927488 10927488 C T SYCP2L Missense_Mutation p.S443F 0.23 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 6 10995328 10995328 C T ELOVL2 Silent p.T139T 0.30 TCGA-FW-A3R5-06 6 110300424 110300424 G A GPR6 Missense_Mutation p.G37R 0.35 tolerated_low_confidence(0.75) benign(0.096) TCGA-FW-A3R5-06 6 110301203 110301203 C T GPR6 Silent p.A296A 0.10 TCGA-FW-A3R5-06 6 110423024 110423024 G A WASF1 Missense_Mutation p.P430L 0.42 tolerated(0.05) probably_damaging(0.994) TCGA-FW-A3R5-06 6 110620340 110620340 C T METTL24 Missense_Mutation p.D191N 0.44 deleterious(0.04) benign(0.143) TCGA-FW-A3R5-06 6 110714215 110714215 G A DDO Silent p.P291P 0.35 TCGA-FW-A3R5-06 6 110714266 110714266 C T DDO Silent p.P274P 0.36 TCGA-FW-A3R5-06 6 110746065 110746065 G C SLC22A16 3'UTR 0.38 TCGA-FW-A3R5-06 6 110760036 110760036 G A SLC22A16 Missense_Mutation p.P400S 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 6 110763791 110763791 G A SLC22A16 Missense_Mutation p.P280L 0.41 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 110942510 110942510 G A CDK19 Missense_Mutation p.P392S 0.41 tolerated(0.41) benign(0.01) TCGA-FW-A3R5-06 6 11104936 11104936 C T ERVFRD-1 Missense_Mutation p.R203Q 0.31 tolerated(0.4) benign(0.098) TCGA-FW-A3R5-06 6 111283616 111283616 A T GTF3C6 Missense_Mutation p.K90I 0.39 deleterious(0.01) possibly_damaging(0.891) TCGA-FW-A3R5-06 6 11191312 11191312 G A NEDD9 Missense_Mutation p.P264S 0.19 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 6 11201094 11201094 G A NEDD9 Intron 0.35 TCGA-FW-A3R5-06 6 112021399 112021399 G A FYN Missense_Mutation p.S257F 0.28 deleterious(0) benign(0.328) TCGA-FW-A3R5-06 6 112671667 112671667 G A RFPL4B Missense_Mutation p.G253R 0.26 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A3R5-06 6 112671717 112671717 C T RFPL4B 3'UTR 0.49 TCGA-FW-A3R5-06 6 114378339 114378339 C T HS3ST5 3'UTR 0.69 TCGA-FW-A3R5-06 6 114378681 114378681 C T HS3ST5 Missense_Mutation p.E261K 0.33 deleterious(0.01) benign(0.068) TCGA-FW-A3R5-06 6 114378682 114378682 C T HS3ST5 Silent p.T260T 0.32 TCGA-FW-A3R5-06 6 114378801 114378801 C T HS3ST5 Missense_Mutation p.E221K 0.38 tolerated(0.16) benign(0.052) TCGA-FW-A3R5-06 6 114379287 114379287 G A HS3ST5 Missense_Mutation p.R59C 0.33 deleterious(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 6 116277770 116277770 G A FRK Missense_Mutation p.S268L 0.46 deleterious(0) possibly_damaging(0.842) TCGA-FW-A3R5-06 6 116288845 116288845 G A FRK Missense_Mutation p.T223I 0.38 deleterious(0.02) possibly_damaging(0.885) TCGA-FW-A3R5-06 6 116599704 116599704 C T TSPYL1 Silent p.R430R 0.22 TCGA-FW-A3R5-06 6 116720701 116720701 C T DSE Silent p.A96A 0.50 TCGA-FW-A3R5-06 6 116757239 116757239 C T DSE Silent p.F536F 0.39 TCGA-FW-A3R5-06 6 116758449 116758449 C T DSE Missense_Mutation p.L940F 0.23 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-FW-A3R5-06 6 116836979 116836979 C T FAM26E Missense_Mutation p.P253S 0.50 tolerated(0.51) benign(0.06) TCGA-FW-A3R5-06 6 116879329 116879329 G A FAM26D Silent p.E157E 0.21 TCGA-FW-A3R5-06 6 116938431 116938431 G A RSPH4A Silent p.K215K 0.20 TCGA-FW-A3R5-06 6 117114252 117114252 C T GPRC6A Missense_Mutation p.G612S 0.34 tolerated(0.61) benign(0.052) TCGA-FW-A3R5-06 6 11714563 11714563 G A ADTRP 3'Flank 0.33 TCGA-FW-A3R5-06 6 117232173 117232173 C T RFX6 Missense_Mutation p.L250F 0.25 deleterious(0.04) possibly_damaging(0.742) TCGA-FW-A3R5-06 6 117243236 117243236 G A RFX6 Silent p.K453K 0.18 TCGA-FW-A3R5-06 6 117586980 117586980 C T VGLL2 Silent p.F18F 0.31 TCGA-FW-A3R5-06 6 117593682 117593682 C T VGLL2 3'UTR 0.45 TCGA-FW-A3R5-06 6 117593690 117593690 C T VGLL2 3'UTR 0.30 TCGA-FW-A3R5-06 6 117609777 117609777 C T ROS1 Missense_Mutation p.E2308K 0.44 tolerated_low_confidence(0.06) benign(0.017) TCGA-FW-A3R5-06 6 117639386 117639386 C T ROS1 Silent p.E1990E 0.46 TCGA-FW-A3R5-06 6 117663617 117663617 G A ROS1 Missense_Mutation p.P1539S 0.10 tolerated(0.83) benign(0.004) TCGA-FW-A3R5-06 6 117681082 117681082 C T ROS1 Missense_Mutation p.A1180T 0.43 tolerated(0.31) benign(0.005) TCGA-FW-A3R5-06 6 117686752 117686752 G A ROS1 Missense_Mutation p.H989Y 0.35 tolerated(0.72) benign(0.05) TCGA-FW-A3R5-06 6 118588247 118588247 C T SLC35F1 Silent p.I189I 0.37 TCGA-FW-A3R5-06 6 119288083 119288083 C T FAM184A Missense_Mutation p.E984K 0.46 deleterious(0.02) benign(0.041) TCGA-FW-A3R5-06 6 119509578 119509578 C T MAN1A1 Missense_Mutation p.A571T 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-FW-A3R5-06 6 119569512 119569512 C T MAN1A1 Missense_Mutation p.R302Q 0.32 deleterious(0.01) possibly_damaging(0.877) TCGA-FW-A3R5-06 6 119623257 119623257 C T MAN1A1 Missense_Mutation p.G238R 0.30 deleterious(0) possibly_damaging(0.549) TCGA-FW-A3R5-06 6 12121044 12121044 C T HIVEP1 Missense_Mutation p.P339L 0.31 tolerated(0.07) benign(0.014) TCGA-FW-A3R5-06 6 12122504 12122504 C T HIVEP1 Silent p.L826L 0.33 TCGA-FW-A3R5-06 6 12123311 12123311 C T HIVEP1 Missense_Mutation p.L1095F 0.15 deleterious(0.03) probably_damaging(0.972) TCGA-FW-A3R5-06 6 12125274 12125274 C T HIVEP1 Missense_Mutation p.S1749F 0.13 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 121526264 121526264 G A TBC1D32 Missense_Mutation p.R843C 0.29 deleterious(0.01) benign(0.014) TCGA-FW-A3R5-06 6 121577399 121577399 G A TBC1D32 Missense_Mutation p.S589L 0.36 deleterious(0.03) benign(0.008) TCGA-FW-A3R5-06 6 121768083 121768083 C T GJA1 Silent p.F30F 0.32 TCGA-FW-A3R5-06 6 121768414 121768414 G A GJA1 Missense_Mutation p.E141K 0.45 deleterious(0.01) benign(0.25) TCGA-FW-A3R5-06 6 12294197 12294197 G A EDN1 Missense_Mutation p.G86E 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 123318898 123318898 G A CLVS2 5'UTR 0.26 TCGA-FW-A3R5-06 6 123369776 123369776 C T CLVS2 Missense_Mutation p.P192S 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 6 123687318 123687318 C T TRDN Missense_Mutation p.R428Q 0.36 tolerated_low_confidence(0.44) benign(0.05) TCGA-FW-A3R5-06 6 123699017 123699017 C T TRDN Missense_Mutation p.E405K 0.54 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-FW-A3R5-06 6 125231419 125231419 G A RP11-510H23.1 RNA 0.29 TCGA-FW-A3R5-06 6 125233416 125233416 C T RP11-510H23.1 RNA 0.12 TCGA-FW-A3R5-06 6 125284084 125284084 G A RP11-510H23.1 RNA 0.22 TCGA-FW-A3R5-06 6 125397960 125397960 C T RNF217 Missense_Mutation p.P188L 0.34 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 125403600 125403600 G A RNF217 Missense_Mutation p.E229K 0.40 tolerated_low_confidence(0.94) benign(0) TCGA-FW-A3R5-06 6 125574873 125574873 C T TPD52L1 Missense_Mutation p.R133C 0.32 deleterious(0.01) possibly_damaging(0.479) TCGA-FW-A3R5-06 6 126298954 126298954 T G HINT3 3'UTR 0.28 TCGA-FW-A3R5-06 6 127476394 127476394 G A RSPO3 Missense_Mutation p.E149K 0.36 deleterious(0.03) benign(0.325) TCGA-FW-A3R5-06 6 127767930 127767930 G A KIAA0408 Missense_Mutation p.P512S 0.12 tolerated(0.36) benign(0.015) TCGA-FW-A3R5-06 6 127768553 127768553 C T KIAA0408 Missense_Mutation p.R304Q 0.56 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 127796962 127796962 C T SOGA3 Missense_Mutation p.D737N 0.50 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 127797208 127797208 C T SOGA3 Missense_Mutation p.E655K 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 127797571 127797571 C T SOGA3 Missense_Mutation p.E534K 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 127898505 127898505 G A C6orf58 Missense_Mutation p.E59K 0.46 tolerated(0.1) benign(0.034) TCGA-FW-A3R5-06 6 127901570 127901570 G A C6orf58 Missense_Mutation p.M183I 0.35 deleterious(0.05) benign(0.217) TCGA-FW-A3R5-06 6 128134385 128134385 G A THEMIS Silent p.S467S 0.47 TCGA-FW-A3R5-06 6 128150761 128150761 C T THEMIS Nonsense_Mutation p.W190* 0.41 TCGA-FW-A3R5-06 6 128388858 128388858 G A PTPRK Missense_Mutation p.P655S 0.32 tolerated(0.07) probably_damaging(0.994) TCGA-FW-A3R5-06 6 128643385 128643385 C T PTPRK Missense_Mutation p.M98I 0.52 tolerated(0.2) benign(0.15) TCGA-FW-A3R5-06 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.33 unknown(0) TCGA-FW-A3R5-06 6 129419523 129419523 C T LAMA2 Missense_Mutation p.S201L 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 129470130 129470130 C T LAMA2 Missense_Mutation p.R306C 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-FW-A3R5-06 6 129498871 129498871 C T LAMA2 Missense_Mutation p.H443Y 0.34 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 6 129704356 129704356 G A LAMA2 Silent p.K1683K 0.38 TCGA-FW-A3R5-06 6 129712754 129712754 G A LAMA2 Silent p.R1730R 0.44 TCGA-FW-A3R5-06 6 129833610 129833610 G A LAMA2 Missense_Mutation p.G2987E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 129921871 129921871 G A ARHGAP18 Silent p.S496S 0.25 TCGA-FW-A3R5-06 6 130465869 130465869 C T SAMD3 Silent p.R453R 0.44 TCGA-FW-A3R5-06 6 130505248 130505248 G A SAMD3 Silent p.F218F 0.46 TCGA-FW-A3R5-06 6 130762808 130762808 G A TMEM200A Missense_Mutation p.R414Q 0.45 deleterious(0.02) possibly_damaging(0.886) TCGA-FW-A3R5-06 6 131186709 131186709 G A EPB41L2 Silent p.S932S 0.29 TCGA-FW-A3R5-06 6 131186710 131186710 G A EPB41L2 Missense_Mutation p.S932F 0.28 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 6 131186724 131186724 G A EPB41L2 Silent p.T927T 0.30 TCGA-FW-A3R5-06 6 131191231 131191231 C T EPB41L2 Silent p.K693K 0.44 TCGA-FW-A3R5-06 6 131220670 131220670 C T EPB41L2 Silent p.K399K 0.36 TCGA-FW-A3R5-06 6 13185135 13185135 C T PHACTR1 Missense_Mutation p.P143S 0.22 tolerated(0.28) benign(0.001) TCGA-FW-A3R5-06 6 132030579 132030579 C T CTAGE9 Missense_Mutation p.G527S 0.42 tolerated(0.05) probably_damaging(0.979) TCGA-FW-A3R5-06 6 132030942 132030942 C T CTAGE9 Missense_Mutation p.E406K 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-FW-A3R5-06 6 132031017 132031017 G A CTAGE9 Nonsense_Mutation p.Q381* 0.30 TCGA-FW-A3R5-06 6 13206217 13206217 C T PHACTR1 Silent p.L279L 0.33 TCGA-FW-A3R5-06 6 132207802 132207802 G A ENPP1 Missense_Mutation p.E849K 0.39 tolerated(0.49) benign(0.023) TCGA-FW-A3R5-06 6 132693826 132693826 G A MOXD1 Missense_Mutation p.P195L 0.43 tolerated(0.22) benign(0.015) TCGA-FW-A3R5-06 6 132938624 132938624 G A TAAR2 Missense_Mutation p.H241Y 0.40 deleterious(0.04) benign(0.26) TCGA-FW-A3R5-06 6 133047941 133047941 G A VNN3 Intron 0.37 TCGA-FW-A3R5-06 6 13305279 13305279 G A TBC1D7 Intron 0.10 TCGA-FW-A3R5-06 6 13365806 13365806 G A GFOD1 Silent p.L114L 0.29 TCGA-FW-A3R5-06 6 133789762 133789762 C T EYA4 Missense_Mutation p.S288L 0.40 deleterious(0.02) probably_damaging(0.966) TCGA-FW-A3R5-06 6 133846313 133846313 G A EYA4 Missense_Mutation p.R587Q 0.43 deleterious(0) possibly_damaging(0.556) TCGA-FW-A3R5-06 6 134212998 134212998 G A TCF21 3'UTR 0.31 TCGA-FW-A3R5-06 6 134349893 134349893 G A SLC2A12 Missense_Mutation p.S357L 0.32 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 6 134350251 134350251 C T SLC2A12 Missense_Mutation p.G238R 0.44 tolerated(0.6) benign(0.012) TCGA-FW-A3R5-06 6 13584380 13584380 C T SIRT5 Missense_Mutation p.S13F 0.31 tolerated_low_confidence(0.2) benign(0.316) TCGA-FW-A3R5-06 6 13595706 13595706 C T SIRT5 Intron 0.19 TCGA-FW-A3R5-06 6 13601076 13601076 C T SIRT5 Missense_Mutation p.S251F 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 136582444 136582444 C T BCLAF1 Missense_Mutation p.E906K 0.11 deleterious(0.05) unknown(0) TCGA-FW-A3R5-06 6 136582507 136582507 G A BCLAF1 Missense_Mutation p.P885S 0.15 tolerated(0.06) possibly_damaging(0.803) TCGA-FW-A3R5-06 6 136582564 136582564 G A BCLAF1 Missense_Mutation p.R866C 0.15 deleterious(0) possibly_damaging(0.835) TCGA-FW-A3R5-06 6 136596793 136596793 G A BCLAF1 Missense_Mutation p.H577Y 0.08 deleterious(0) benign(0.291) TCGA-FW-A3R5-06 6 136597061 136597061 C T BCLAF1 Silent p.R534R 0.14 TCGA-FW-A3R5-06 6 136597445 136597445 C T BCLAF1 Silent p.E406E 0.05 TCGA-FW-A3R5-06 6 136597494 136597494 C T BCLAF1 Missense_Mutation p.G390E 0.09 tolerated(0.92) benign(0.165) TCGA-FW-A3R5-06 6 136599818 136599818 C T BCLAF1 Missense_Mutation p.M67I 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3R5-06 6 136709639 136709639 C T MAP7 Missense_Mutation p.E162K 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 137322616 137322616 C T IL20RA 3'UTR 0.13 TCGA-FW-A3R5-06 6 137466765 137466765 G A IL22RA2 Missense_Mutation p.P263L 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 6 137815305 137815305 C T OLIG3 Translation_Start_Site p.M1? 0.45 deleterious(0) unknown(0) TCGA-FW-A3R5-06 6 137815333 137815333 C T OLIG3 5'UTR 0.30 TCGA-FW-A3R5-06 6 137815371 137815371 G A OLIG3 5'UTR 0.38 TCGA-FW-A3R5-06 6 13807255 13807255 G A MCUR1 Missense_Mutation p.S146F 0.38 tolerated(0.7) benign(0.023) TCGA-FW-A3R5-06 6 138202199 138202199 C T TNFAIP3 Nonsense_Mutation p.R706* 0.24 TCGA-FW-A3R5-06 6 139175174 139175174 G A ECT2L Missense_Mutation p.G361S 0.36 tolerated(0.67) benign(0.024) TCGA-FW-A3R5-06 6 139564197 139564197 G A TXLNB Silent p.F507F 0.28 TCGA-FW-A3R5-06 6 13977612 13977612 C T RNF182 Missense_Mutation p.L88F 0.27 deleterious(0.03) benign(0.372) TCGA-FW-A3R5-06 6 14135579 14135579 C T CD83 3'UTR 0.20 TCGA-FW-A3R5-06 6 142691444 142691444 G A GPR126 Missense_Mutation p.E195K 0.36 tolerated(1) benign(0.02) TCGA-FW-A3R5-06 6 143080913 143080913 G A HIVEP2 Missense_Mutation p.P2171L 0.23 tolerated(0.5) benign(0.051) TCGA-FW-A3R5-06 6 143093026 143093026 G A HIVEP2 Silent p.S950S 0.40 TCGA-FW-A3R5-06 6 143093720 143093720 G A HIVEP2 Missense_Mutation p.T719I 0.28 tolerated(0.27) benign(0.046) TCGA-FW-A3R5-06 6 144128271 144128271 G A PHACTR2 Splice_Site p.X641_splice 0.50 TCGA-FW-A3R5-06 6 144769802 144769802 C T UTRN Missense_Mutation p.R657C 0.13 deleterious(0.04) possibly_damaging(0.582) TCGA-FW-A3R5-06 6 144869848 144869848 C T UTRN Missense_Mutation p.S2223L 0.39 tolerated(0.46) benign(0.001) TCGA-FW-A3R5-06 6 146256503 146256503 G C SHPRH Missense_Mutation p.R882G 0.49 tolerated(0.08) benign(0.342) TCGA-FW-A3R5-06 6 146350703 146350703 C T GRM1 Missense_Mutation p.S17F 0.47 tolerated_low_confidence(0.62) benign(0) TCGA-FW-A3R5-06 6 146673593 146673593 A T GRM1 Missense_Mutation p.E465V 0.26 deleterious(0) probably_damaging(0.985) TCGA-FW-A3R5-06 6 146720077 146720077 C T GRM1 Silent p.I634I 0.46 TCGA-FW-A3R5-06 6 147685156 147685156 C T STXBP5 Silent p.L979L 0.43 TCGA-FW-A3R5-06 6 148855070 148855070 C T SASH1 Missense_Mutation p.P633L 0.21 tolerated(0.11) benign(0.013) TCGA-FW-A3R5-06 6 149720247 149720247 T C TAB2 Silent p.H622H 0.42 TCGA-FW-A3R5-06 6 149997375 149997375 G A LATS1 Intron 0.47 TCGA-FW-A3R5-06 6 150266593 150266593 G A ULBP2 Silent p.G78G 0.32 TCGA-FW-A3R5-06 6 150713587 150713587 C T IYD Silent p.I159I 0.38 TCGA-FW-A3R5-06 6 151671950 151671950 G A AKAP12 Silent p.K808K 0.36 TCGA-FW-A3R5-06 6 151672380 151672380 G A AKAP12 Missense_Mutation p.E952K 0.26 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 151894528 151894528 G A CCDC170 Missense_Mutation p.A332T 0.45 tolerated(0.49) benign(0.029) TCGA-FW-A3R5-06 6 152443475 152443475 C T SYNE1 3'UTR 0.62 TCGA-FW-A3R5-06 6 152536101 152536101 C T SYNE1 Missense_Mutation p.R7429K 0.45 possibly_damaging(0.78) TCGA-FW-A3R5-06 6 152557374 152557374 C T SYNE1 Missense_Mutation p.R6755Q 0.48 benign(0.081) TCGA-FW-A3R5-06 6 152583269 152583269 G A SYNE1 Silent p.S6290S 0.35 TCGA-FW-A3R5-06 6 152605214 152605214 C T SYNE1 Missense_Mutation p.D6036N 0.39 possibly_damaging(0.642) TCGA-FW-A3R5-06 6 152647133 152647133 G A SYNE1 Missense_Mutation p.S5133L 0.42 benign(0.013) TCGA-FW-A3R5-06 6 152708338 152708338 G A SYNE1 Missense_Mutation p.H2786Y 0.38 benign(0.266) TCGA-FW-A3R5-06 6 152737732 152737732 G A SYNE1 Missense_Mutation p.S1947F 0.35 possibly_damaging(0.775) TCGA-FW-A3R5-06 6 152737851 152737851 C T SYNE1 Silent p.K1907K 0.44 TCGA-FW-A3R5-06 6 152768620 152768620 G A SYNE1 Silent p.F1214F 0.48 TCGA-FW-A3R5-06 6 152782813 152782813 G A SYNE1 Silent p.H771H 0.42 TCGA-FW-A3R5-06 6 152786560 152786560 C T SYNE1 Missense_Mutation p.E589K 0.50 benign(0.15) TCGA-FW-A3R5-06 6 152787119 152787119 G A SYNE1 Missense_Mutation p.S576L 0.45 possibly_damaging(0.812) TCGA-FW-A3R5-06 6 152831474 152831474 G A SYNE1 Silent p.L145L 0.48 TCGA-FW-A3R5-06 6 152861154 152861154 C T SYNE1 Missense_Mutation p.E24K 0.34 probably_damaging(0.992) TCGA-FW-A3R5-06 6 153043320 153043320 C T MYCT1 Nonsense_Mutation p.R214* 0.44 TCGA-FW-A3R5-06 6 153078241 153078241 G A VIP Missense_Mutation p.E160K 0.38 tolerated(0.64) benign(0.005) TCGA-FW-A3R5-06 6 15374430 15374430 C T JARID2 Missense_Mutation p.S43F 0.33 deleterious(0) benign(0.016) TCGA-FW-A3R5-06 6 15410457 15410457 C T JARID2 Missense_Mutation p.L62F 0.29 tolerated(0.19) possibly_damaging(0.786) TCGA-FW-A3R5-06 6 154411258 154411258 C T OPRM1 Silent p.L289L 0.44 TCGA-FW-A3R5-06 6 154412272 154412272 C T OPRM1 Missense_Mutation p.L370F 0.43 deleterious(0.05) probably_damaging(0.996) TCGA-FW-A3R5-06 6 154414531 154414531 C T OPRM1 Intron 0.31 TCGA-FW-A3R5-06 6 15452403 15452403 C T JARID2 Nonsense_Mutation p.R164* 0.10 TCGA-FW-A3R5-06 6 154533920 154533920 G A IPCEF1 Missense_Mutation p.S174F 0.36 deleterious(0.01) possibly_damaging(0.712) TCGA-FW-A3R5-06 6 154727673 154727673 G A CNKSR3 Missense_Mutation p.R495W 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 6 15487565 15487565 G A JARID2 Missense_Mutation p.R233Q 0.27 tolerated_low_confidence(0.08) benign(0.014) TCGA-FW-A3R5-06 6 15497228 15497228 C T JARID2 Missense_Mutation p.P591L 0.13 deleterious(0.03) probably_damaging(0.984) TCGA-FW-A3R5-06 6 155154119 155154119 C T SCAF8 Missense_Mutation p.P1136S 0.36 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 6 155450443 155450443 C T TIAM2 Missense_Mutation p.S29F 0.26 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-FW-A3R5-06 6 155450702 155450702 C T TIAM2 Silent p.G115G 0.46 TCGA-FW-A3R5-06 6 155450803 155450803 C T TIAM2 Missense_Mutation p.S149F 0.37 tolerated_low_confidence(0.22) benign(0.429) TCGA-FW-A3R5-06 6 155450997 155450997 G A TIAM2 Missense_Mutation p.A214T 0.45 tolerated_low_confidence(0.15) benign(0.004) TCGA-FW-A3R5-06 6 155451141 155451141 G A TIAM2 Missense_Mutation p.E262K 0.44 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 6 155458470 155458470 G A TIAM2 Missense_Mutation p.D452N 0.53 deleterious(0.03) benign(0.048) TCGA-FW-A3R5-06 6 155485641 155485641 G A TIAM2 Silent p.P707P 0.41 TCGA-FW-A3R5-06 6 155498001 155498001 G A TIAM2 Missense_Mutation p.D805N 0.44 tolerated(0.07) benign(0.004) TCGA-FW-A3R5-06 6 155575476 155575476 G A TIAM2 Intron 0.42 TCGA-FW-A3R5-06 6 155757553 155757553 G A NOX3 Missense_Mutation p.S266L 0.33 tolerated(0.23) benign(0.329) TCGA-FW-A3R5-06 6 155757560 155757560 C T NOX3 Missense_Mutation p.E264K 0.34 tolerated(0.29) benign(0.012) TCGA-FW-A3R5-06 6 155761161 155761161 G A NOX3 Silent p.S199S 0.42 TCGA-FW-A3R5-06 6 157528825 157528825 C T ARID1B Missense_Mutation p.P2184S 0.38 possibly_damaging(0.544) TCGA-FW-A3R5-06 6 157743827 157743827 G A TMEM242 Silent p.F33F 0.43 TCGA-FW-A3R5-06 6 158487733 158487733 C T SYNJ2 Intron 0.44 TCGA-FW-A3R5-06 6 158490620 158490620 C T SYNJ2 Missense_Mutation p.H619Y 0.47 tolerated(0.08) possibly_damaging(0.847) TCGA-FW-A3R5-06 6 158505106 158505106 C T SYNJ2 Silent p.L1036L 0.41 TCGA-FW-A3R5-06 6 158735036 158735036 C T TULP4 5'UTR 0.56 TCGA-FW-A3R5-06 6 158900900 158900900 C T TULP4 Nonsense_Mutation p.Q382* 0.40 TCGA-FW-A3R5-06 6 159086542 159086542 C T SYTL3 Missense_Mutation p.R76W 0.80 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 6 159166610 159166610 C T SYTL3 Silent p.F318F 0.29 TCGA-FW-A3R5-06 6 159462467 159462467 C T TAGAP Silent p.K132K 0.34 TCGA-FW-A3R5-06 6 159618524 159618524 C T FNDC1 Silent p.V57V 0.18 TCGA-FW-A3R5-06 6 159646591 159646591 G A FNDC1 Silent p.E303E 0.39 TCGA-FW-A3R5-06 6 159650906 159650906 C T FNDC1 Missense_Mutation p.P414S 0.11 tolerated(0.58) unknown(0) TCGA-FW-A3R5-06 6 159650951 159650951 G A FNDC1 Missense_Mutation p.E429K 0.43 deleterious(0) unknown(0) TCGA-FW-A3R5-06 6 159654305 159654305 C T FNDC1 Missense_Mutation p.R921W 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-FW-A3R5-06 6 159654376 159654376 C T FNDC1 Silent p.S944S 0.39 TCGA-FW-A3R5-06 6 159654630 159654630 C T FNDC1 Missense_Mutation p.S1029F 0.45 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 6 159660564 159660564 C T FNDC1 Missense_Mutation p.P1399L 0.38 deleterious(0) unknown(0) TCGA-FW-A3R5-06 6 159688919 159688919 G A FNDC1 Missense_Mutation p.G1844R 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 160239672 160239672 G A PNLDC1 Missense_Mutation p.G404R 0.13 deleterious(0.02) benign(0.093) TCGA-FW-A3R5-06 6 160240299 160240299 C T PNLDC1 Silent p.L472L 0.41 TCGA-FW-A3R5-06 6 160431725 160431725 C T IGF2R Missense_Mutation p.P141S 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 160482654 160482654 C T IGF2R Missense_Mutation p.L1128F 0.44 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 160679494 160679494 C T SLC22A2 Missense_Mutation p.S99N 0.46 deleterious(0) probably_damaging(0.93) TCGA-FW-A3R5-06 6 160857870 160857870 C T SLC22A3 Missense_Mutation p.P345L 0.52 deleterious(0) possibly_damaging(0.853) TCGA-FW-A3R5-06 6 160875197 160875197 G A SLC22A3 3'Flank 0.40 TCGA-FW-A3R5-06 6 160905242 160905242 G A LPAL2 RNA 0.42 TCGA-FW-A3R5-06 6 160952867 160952867 C T LPA Missense_Mutation p.G2006E 0.41 deleterious(0) benign(0.232) TCGA-FW-A3R5-06 6 160961164 160961164 C T LPA Silent p.V1882V 0.45 TCGA-FW-A3R5-06 6 160977153 160977153 C T LPA Missense_Mutation p.G1626D 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 161007493 161007493 G A LPA Missense_Mutation p.P1373S 0.44 tolerated_low_confidence(0.15) probably_damaging(0.99) TCGA-FW-A3R5-06 6 161010697 161010697 C T LPA Missense_Mutation p.G1279R 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 161015120 161015120 C T LPA Missense_Mutation p.D1167N 0.38 tolerated(0.1) possibly_damaging(0.457) TCGA-FW-A3R5-06 6 161123349 161123349 G A PLG Missense_Mutation p.E5K 0.37 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 6 161132108 161132108 G C PLG Splice_Site p.X98_splice 0.49 TCGA-FW-A3R5-06 6 161139349 161139349 C T PLG Missense_Mutation p.P271S 0.45 tolerated(0.08) benign(0.037) TCGA-FW-A3R5-06 6 161152234 161152234 C T PLG Missense_Mutation p.L470F 0.17 deleterious(0.04) benign(0.243) TCGA-FW-A3R5-06 6 161162403 161162403 C T PLG Silent p.V693V 0.37 TCGA-FW-A3R5-06 6 161173184 161173184 C T PLG Silent p.L721L 0.30 TCGA-FW-A3R5-06 6 16141939 16141939 C T MYLIP Missense_Mutation p.A121V 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 161966466 161966466 C T PARK2 Intron 0.50 TCGA-FW-A3R5-06 6 162683579 162683579 G A PARK2 Silent p.D130D 0.41 TCGA-FW-A3R5-06 6 16306451 16306451 C T ATXN1 3'UTR 0.26 TCGA-FW-A3R5-06 6 16306646 16306646 C T ATXN1 Missense_Mutation p.E788K 0.30 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 6 16327635 16327635 G A ATXN1 Missense_Mutation p.R303W 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 16328098 16328098 G A ATXN1 Silent p.I148I 0.24 TCGA-FW-A3R5-06 6 165749672 165749672 G A PDE10A Missense_Mutation p.P736L 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 166571675 166571675 G A T 3'UTR 0.43 TCGA-FW-A3R5-06 6 166581001 166581001 C T T Missense_Mutation p.E27K 0.47 deleterious(0) probably_damaging(0.926) TCGA-FW-A3R5-06 6 166944732 166944732 C T RPS6KA2 Missense_Mutation p.A104T 0.27 deleterious(0) possibly_damaging(0.834) TCGA-FW-A3R5-06 6 167275736 167275736 G A RPS6KA2 5'UTR 0.20 TCGA-FW-A3R5-06 6 167550874 167550874 G A CCR6 3'UTR 0.47 TCGA-FW-A3R5-06 6 167570885 167570885 G A GPR31 Silent p.L145L 0.36 TCGA-FW-A3R5-06 6 167591985 167591985 G A TCP10L2 Silent p.R204R 0.18 TCGA-FW-A3R5-06 6 167754223 167754223 C T TTLL2 Missense_Mutation p.R279W 0.38 deleterious(0.04) benign(0.373) TCGA-FW-A3R5-06 6 167754787 167754787 G A TTLL2 Missense_Mutation p.E467K 0.38 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 167786700 167786700 C T TCP10 Missense_Mutation p.G313E 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FW-A3R5-06 6 167796357 167796357 T A TCP10 Missense_Mutation p.E2V 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 167796359 167796359 C T TCP10 Translation_Start_Site p.M1? 0.31 tolerated_low_confidence(0.12) benign(0.184) TCGA-FW-A3R5-06 6 168265363 168265363 C T MLLT4 Nonsense_Mutation p.R80* 0.46 TCGA-FW-A3R5-06 6 168289904 168289904 C T MLLT4 Missense_Mutation p.P303S 0.44 deleterious(0.02) benign(0.037) TCGA-FW-A3R5-06 6 168352575 168352575 C T MLLT4 Missense_Mutation p.S1507L 0.30 deleterious_low_confidence(0) benign(0.396) TCGA-FW-A3R5-06 6 168479715 168479715 G A FRMD1 Silent p.F20F 0.28 TCGA-FW-A3R5-06 6 168910679 168910679 G C SMOC2 Missense_Mutation p.G57R 0.52 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 169623443 169623443 C T THBS2 Silent p.L967L 0.34 TCGA-FW-A3R5-06 6 170068224 170068224 G A WDR27 Missense_Mutation p.P172S 0.44 tolerated_low_confidence(0.25) benign(0.017) TCGA-FW-A3R5-06 6 170154030 170154030 T A ERMARD Missense_Mutation p.F26Y 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-FW-A3R5-06 6 170627575 170627575 C T FAM120B Missense_Mutation p.P366L 0.40 deleterious_low_confidence(0.01) benign(0.004) TCGA-FW-A3R5-06 6 170873696 170873696 C T TBP Silent p.A187A 0.42 TCGA-FW-A3R5-06 6 17507491 17507491 A T CAP2 Missense_Mutation p.N131I 0.32 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 17539531 17539531 C T CAP2 Missense_Mutation p.S223F 0.34 tolerated(0.25) benign(0.012) TCGA-FW-A3R5-06 6 17539536 17539536 C T CAP2 Missense_Mutation p.L225F 0.16 tolerated(0.71) benign(0.005) TCGA-FW-A3R5-06 6 17543308 17543308 C T CAP2 Silent p.L381L 0.31 TCGA-FW-A3R5-06 6 17551720 17551720 C T CAP2 Missense_Mutation p.S412F 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 17629689 17629689 G A NUP153 Missense_Mutation p.P914L 0.28 tolerated(0.08) benign(0.005) TCGA-FW-A3R5-06 6 17675478 17675478 G A NUP153 Silent p.A235A 0.25 TCGA-FW-A3R5-06 6 17675575 17675575 G A NUP153 Missense_Mutation p.S203L 0.35 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 6 17794534 17794534 G A KIF13A Silent p.I1056I 0.28 TCGA-FW-A3R5-06 6 17809054 17809054 G A KIF13A Missense_Mutation p.T703I 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 6 18160191 18160191 C T KDM1B Missense_Mutation p.P22L 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.488) TCGA-FW-A3R5-06 6 20490515 20490515 C T E2F3 Silent p.L418L 0.25 TCGA-FW-A3R5-06 6 22294766 22294766 C T PRL Missense_Mutation p.V26M 0.13 deleterious(0.05) probably_damaging(0.992) TCGA-FW-A3R5-06 6 22570398 22570398 C T HDGFL1 Silent p.L198L 0.33 TCGA-FW-A3R5-06 6 24134672 24134672 C T NRSN1 Silent p.A39A 0.32 TCGA-FW-A3R5-06 6 24436904 24436904 C T GPLD1 Missense_Mutation p.G753E 0.27 tolerated(0.05) benign(0.129) TCGA-FW-A3R5-06 6 24447200 24447200 C T GPLD1 Silent p.L562L 0.26 TCGA-FW-A3R5-06 6 24448182 24448182 G A GPLD1 Missense_Mutation p.S534F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 24454270 24454270 C T GPLD1 Silent p.E436E 0.25 TCGA-FW-A3R5-06 6 24460566 24460566 C T GPLD1 Missense_Mutation p.D317N 0.09 tolerated(0.15) benign(0.018) TCGA-FW-A3R5-06 6 24473886 24473886 G A GPLD1 Missense_Mutation p.H151Y 0.24 tolerated(0.1) benign(0.065) TCGA-FW-A3R5-06 6 24503662 24503662 G A ALDH5A1 Splice_Site p.X203_splice 0.31 TCGA-FW-A3R5-06 6 24533775 24533775 G A ALDH5A1 Silent p.V494V 0.23 TCGA-FW-A3R5-06 6 24534042 24534042 G A ALDH5A1 3'UTR 0.30 TCGA-FW-A3R5-06 6 24559266 24559266 G A KIAA0319 Silent p.F903F 0.28 TCGA-FW-A3R5-06 6 24563606 24563606 G A KIAA0319 Missense_Mutation p.R858W 0.32 deleterious(0) possibly_damaging(0.462) TCGA-FW-A3R5-06 6 24576801 24576801 C T KIAA0319 Missense_Mutation p.G510E 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 24581180 24581180 C T KIAA0319 Missense_Mutation p.G418E 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 24581181 24581181 C T KIAA0319 Missense_Mutation p.G418R 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 24596346 24596346 C T KIAA0319 Missense_Mutation p.G186S 0.33 tolerated(0.2) benign(0.181) TCGA-FW-A3R5-06 6 24596407 24596407 C T KIAA0319 Silent p.K165K 0.29 TCGA-FW-A3R5-06 6 24667042 24667042 C T TDP2 Missense_Mutation p.E17K 0.29 tolerated(0.13) benign(0.292) TCGA-FW-A3R5-06 6 24848321 24848321 G A FAM65B Nonsense_Mutation p.Q337* 0.40 TCGA-FW-A3R5-06 6 24865551 24865551 C T FAM65B Missense_Mutation p.R181Q 0.33 deleterious(0) possibly_damaging(0.559) TCGA-FW-A3R5-06 6 25610314 25610314 C T LRRC16A Missense_Mutation p.A1295V 0.27 tolerated_low_confidence(0.23) benign(0.317) TCGA-FW-A3R5-06 6 25610343 25610343 C T LRRC16A Missense_Mutation p.P1305S 0.27 tolerated_low_confidence(0.17) benign(0.002) TCGA-FW-A3R5-06 6 25652580 25652580 C T SCGN 5'UTR 0.26 TCGA-FW-A3R5-06 6 25701497 25701497 G A SCGN Silent p.V255V 0.21 TCGA-FW-A3R5-06 6 25727181 25727181 C T HIST1H2BA Silent p.G15G 0.28 TCGA-FW-A3R5-06 6 25769328 25769328 C T SLC17A4 Silent p.A69A 0.26 TCGA-FW-A3R5-06 6 25773505 25773505 G A SLC17A4 Missense_Mutation p.G237R 0.32 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 6 25811878 25811878 A G SLC17A1 Missense_Mutation p.F340L 0.14 tolerated(0.11) possibly_damaging(0.876) TCGA-FW-A3R5-06 6 25811976 25811976 G A SLC17A1 Missense_Mutation p.P307L 0.18 deleterious(0.04) probably_damaging(0.971) TCGA-FW-A3R5-06 6 25850805 25850805 C T SLC17A3 Missense_Mutation p.R292K 0.19 tolerated(1) benign(0.023) TCGA-FW-A3R5-06 6 25862124 25862124 G A SLC17A3 Missense_Mutation p.S146F 0.29 deleterious(0) possibly_damaging(0.77) TCGA-FW-A3R5-06 6 25862608 25862608 C T SLC17A3 Silent p.T52T 0.19 TCGA-FW-A3R5-06 6 26032146 26032146 G A HIST1H3B Missense_Mutation p.A48V 0.19 deleterious_low_confidence(0) benign(0.155) TCGA-FW-A3R5-06 6 26104318 26104318 C T HIST1H4C Missense_Mutation p.S48F 0.27 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 6 26216779 26216779 C T HIST1H2BG Silent p.K31K 0.19 TCGA-FW-A3R5-06 6 2624022 2624022 G A C6orf195 Missense_Mutation p.P12L 0.18 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FW-A3R5-06 6 26240738 26240738 G A HIST1H4F Missense_Mutation p.G29S 0.20 deleterious(0.01) probably_damaging(0.955) TCGA-FW-A3R5-06 6 26250518 26250518 C T HIST1H3F Missense_Mutation p.E106K 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FW-A3R5-06 6 26273370 26273370 C T HIST1H2BI Missense_Mutation p.S56L 0.28 deleterious_low_confidence(0.05) benign(0.195) TCGA-FW-A3R5-06 6 26368453 26368453 C T BTN3A2 Missense_Mutation p.H15Y 0.35 tolerated(1) benign(0.013) TCGA-FW-A3R5-06 6 26377255 26377255 C T BTN3A2 3'UTR 0.19 TCGA-FW-A3R5-06 6 26393392 26393392 C T BTN2A2 3'UTR 0.28 TCGA-FW-A3R5-06 6 26413381 26413381 C T BTN3A1 Intron 0.30 TCGA-FW-A3R5-06 6 26414069 26414069 C T BTN3A1 3'UTR 0.31 TCGA-FW-A3R5-06 6 26463639 26463639 C T BTN2A1 Missense_Mutation p.L200F 0.24 deleterious(0.01) possibly_damaging(0.651) TCGA-FW-A3R5-06 6 26502051 26502051 G A BTN1A1 Missense_Mutation p.G105R 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 26509185 26509185 C T BTN1A1 Missense_Mutation p.P455L 0.19 deleterious(0) possibly_damaging(0.833) TCGA-FW-A3R5-06 6 26545639 26545639 C T HMGN4 Missense_Mutation p.P69S 0.24 deleterious(0.04) benign(0.3) TCGA-FW-A3R5-06 6 2671527 2671527 C T MYLK4 3'UTR 0.20 TCGA-FW-A3R5-06 6 27218585 27218585 G A PRSS16 Silent p.K197K 0.27 TCGA-FW-A3R5-06 6 27220706 27220706 G A PRSS16 Silent p.Q376Q 0.31 TCGA-FW-A3R5-06 6 27368311 27368311 C T ZNF391 Silent p.F54F 0.23 TCGA-FW-A3R5-06 6 27419836 27419836 G A ZNF184 Missense_Mutation p.P501L 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 27839863 27839863 C T HIST1H3I Silent p.Q77Q 0.13 TCGA-FW-A3R5-06 6 27860533 27860533 C T HIST1H2AM 3'UTR 0.12 TCGA-FW-A3R5-06 6 27925636 27925636 C T OR2B6 Silent p.F206F 0.23 TCGA-FW-A3R5-06 6 27925637 27925637 C T OR2B6 Missense_Mutation p.H207Y 0.15 deleterious(0) possibly_damaging(0.552) TCGA-FW-A3R5-06 6 28119655 28119655 C T ZKSCAN8 Nonsense_Mutation p.Q198* 0.33 TCGA-FW-A3R5-06 6 28120072 28120072 C T ZKSCAN8 Missense_Mutation p.L229F 0.19 tolerated(0.11) benign(0.091) TCGA-FW-A3R5-06 6 28121356 28121356 C T ZKSCAN8 Missense_Mutation p.P433L 0.08 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 6 28269783 28269783 G A PGBD1 Missense_Mutation p.E718K 0.14 tolerated(1) benign(0.008) TCGA-FW-A3R5-06 6 28293802 28293802 G A ZSCAN31 3'UTR 0.22 TCGA-FW-A3R5-06 6 28333369 28333369 C T ZKSCAN3 Silent p.A308A 0.26 TCGA-FW-A3R5-06 6 28403867 28403867 G A ZSCAN23 Silent p.S59S 0.32 TCGA-FW-A3R5-06 6 28403868 28403868 G A ZSCAN23 Missense_Mutation p.S59F 0.32 deleterious(0) benign(0.237) TCGA-FW-A3R5-06 6 28403922 28403922 G A ZSCAN23 Missense_Mutation p.P41L 0.31 tolerated(0.42) benign(0.002) TCGA-FW-A3R5-06 6 28493824 28493824 C T GPX5 Missense_Mutation p.P12S 0.32 tolerated_low_confidence(0.24) benign(0.007) TCGA-FW-A3R5-06 6 28497335 28497335 C T GPX5 Silent p.L65L 0.35 TCGA-FW-A3R5-06 6 28499611 28499611 C T GPX5 Missense_Mutation p.P100S 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 28502044 28502044 C T GPX5 3'UTR 0.31 TCGA-FW-A3R5-06 6 28539966 28539966 C T SCAND3 Missense_Mutation p.E1234K 0.26 tolerated_low_confidence(0.3) possibly_damaging(0.739) TCGA-FW-A3R5-06 6 28540813 28540813 C T SCAND3 Silent p.K951K 0.28 TCGA-FW-A3R5-06 6 28540967 28540967 G A SCAND3 Missense_Mutation p.S900L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FW-A3R5-06 6 28541300 28541300 G A SCAND3 Missense_Mutation p.S789L 0.19 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-FW-A3R5-06 6 28543009 28543009 G A SCAND3 Silent p.N491N 0.31 TCGA-FW-A3R5-06 6 28543050 28543050 C T SCAND3 Missense_Mutation p.D478N 0.30 tolerated_low_confidence(0.09) benign(0.002) TCGA-FW-A3R5-06 6 28543236 28543236 C T SCAND3 Missense_Mutation p.E416K 0.24 tolerated_low_confidence(0.06) benign(0.012) TCGA-FW-A3R5-06 6 28554407 28554407 C T SCAND3 Missense_Mutation p.E30K 0.35 deleterious_low_confidence(0) benign(0.415) TCGA-FW-A3R5-06 6 2890665 2890665 C T SERPINB9 Missense_Mutation p.G288E 0.25 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 2893767 2893767 G A SERPINB9 Missense_Mutation p.P149S 0.29 tolerated(1) benign(0.05) TCGA-FW-A3R5-06 6 28967442 28967442 G A ZNF311 Intron 0.17 TCGA-FW-A3R5-06 6 2900696 2900696 G A SERPINB9 Silent p.T50T 0.33 TCGA-FW-A3R5-06 6 29012767 29012767 G A OR2W1 Silent p.F62F 0.26 TCGA-FW-A3R5-06 6 29012823 29012823 C T OR2W1 Missense_Mutation p.A44T 0.32 tolerated(1) benign(0.099) TCGA-FW-A3R5-06 6 29012875 29012875 G A OR2W1 Silent p.I26I 0.29 TCGA-FW-A3R5-06 6 29054214 29054214 C T OR2B3 Missense_Mutation p.G271E 0.11 deleterious(0.04) possibly_damaging(0.58) TCGA-FW-A3R5-06 6 29080214 29080214 G A OR2J3 Missense_Mutation p.E183K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 6 29080233 29080233 G A OR2J3 Missense_Mutation p.R189Q 0.23 tolerated(0.14) benign(0.003) TCGA-FW-A3R5-06 6 29080605 29080605 C T OR2J3 3'Flank 0.16 TCGA-FW-A3R5-06 6 29141779 29141779 C T OR2J2 Missense_Mutation p.R123C 0.29 deleterious(0.01) benign(0.336) TCGA-FW-A3R5-06 6 29141890 29141890 C T OR2J2 Missense_Mutation p.H160Y 0.10 tolerated(0.06) possibly_damaging(0.849) TCGA-FW-A3R5-06 6 29141894 29141894 C T OR2J2 Missense_Mutation p.S161F 0.30 deleterious(0.02) benign(0.029) TCGA-FW-A3R5-06 6 29142037 29142037 C T OR2J2 Missense_Mutation p.L209F 0.22 deleterious(0.04) benign(0.037) TCGA-FW-A3R5-06 6 29142318 29142318 G A OR2J2 Silent p.A302A 0.19 TCGA-FW-A3R5-06 6 29142344 29142344 G A OR2J2 Missense_Mutation p.G311E 0.34 tolerated(0.07) benign(0.003) TCGA-FW-A3R5-06 6 29274634 29274634 C T OR14J1 Silent p.P56P 0.22 TCGA-FW-A3R5-06 6 29275004 29275004 C T OR14J1 Missense_Mutation p.P180S 0.19 deleterious(0.02) possibly_damaging(0.859) TCGA-FW-A3R5-06 6 29275106 29275106 C T OR14J1 Missense_Mutation p.L214F 0.32 tolerated(0.36) benign(0.019) TCGA-FW-A3R5-06 6 29275126 29275126 C T OR14J1 Silent p.F220F 0.23 TCGA-FW-A3R5-06 6 29323644 29323644 G A OR5V1 Missense_Mutation p.S110L 0.29 deleterious(0) benign(0.049) TCGA-FW-A3R5-06 6 29323781 29323781 C T OR5V1 Silent p.G64G 0.31 TCGA-FW-A3R5-06 6 29324030 29324030 G A OR5V1 5'UTR 0.27 TCGA-FW-A3R5-06 6 29342696 29342696 G A OR12D3 Silent p.A123A 0.15 TCGA-FW-A3R5-06 6 29342997 29342997 G A OR12D3 Missense_Mutation p.P23L 0.11 tolerated(0.65) benign(0.013) TCGA-FW-A3R5-06 6 29342998 29342998 G A OR12D3 Missense_Mutation p.P23S 0.30 tolerated(0.39) benign(0.091) TCGA-FW-A3R5-06 6 29364623 29364623 C T OR12D2 Silent p.S49S 0.22 TCGA-FW-A3R5-06 6 29365268 29365268 G A OR12D2 Silent p.E264E 0.32 TCGA-FW-A3R5-06 6 29395302 29395302 G A OR11A1 Silent p.F39F 0.37 TCGA-FW-A3R5-06 6 29407834 29407834 C T OR10C1 Silent p.L14L 0.10 TCGA-FW-A3R5-06 6 29408205 29408205 G A OR10C1 Missense_Mutation p.R138Q 0.30 tolerated(0.1) benign(0.013) TCGA-FW-A3R5-06 6 29408206 29408206 G A OR10C1 Silent p.R138R 0.10 TCGA-FW-A3R5-06 6 29408375 29408375 G A OR10C1 Missense_Mutation p.E195K 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 6 29429491 29429491 G A OR2H1 5'UTR 0.29 TCGA-FW-A3R5-06 6 29429863 29429863 G A OR2H1 Missense_Mutation p.G106E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 29429872 29429872 A C OR2H1 Missense_Mutation p.E109A 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 6 29430158 29430158 C T OR2H1 Silent p.F204F 0.29 TCGA-FW-A3R5-06 6 29430209 29430209 G A OR2H1 Silent p.Q221Q 0.26 TCGA-FW-A3R5-06 6 29555752 29555752 C T OR2H2 Missense_Mutation p.L11F 0.30 deleterious(0.01) benign(0.023) TCGA-FW-A3R5-06 6 29556665 29556665 G A OR2H2 3'UTR 0.12 TCGA-FW-A3R5-06 6 29595317 29595317 G A GABBR1 Silent p.S201S 0.41 TCGA-FW-A3R5-06 6 29627145 29627145 G A MOG Silent p.G46G 0.22 TCGA-FW-A3R5-06 6 29639288 29639288 G A MOG 3'UTR 0.30 TCGA-FW-A3R5-06 6 29639313 29639313 G A MOG 3'UTR 0.11 TCGA-FW-A3R5-06 6 29640171 29640171 C T ZFP57 3'UTR 0.26 TCGA-FW-A3R5-06 6 29640975 29640975 G A ZFP57 Nonsense_Mutation p.Q305* 0.28 TCGA-FW-A3R5-06 6 29761626 29761626 C T HLA-V Intron 0.28 TCGA-FW-A3R5-06 6 29797602 29797602 C T HLA-G Missense_Mutation p.S302F 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.554) TCGA-FW-A3R5-06 6 29974415 29974415 G A ZNRD1-AS1 Intron 0.29 TCGA-FW-A3R5-06 6 29974663 29974663 G A ZNRD1-AS1 Intron 0.50 TCGA-FW-A3R5-06 6 30037021 30037021 C T PPP1R11 Missense_Mutation p.P107S 0.34 tolerated(0.46) unknown(0) TCGA-FW-A3R5-06 6 30104940 30104940 G A TRIM40 Missense_Mutation p.E43K 0.24 tolerated(0.39) benign(0.027) TCGA-FW-A3R5-06 6 30105149 30105149 C T TRIM40 Silent p.S112S 0.12 TCGA-FW-A3R5-06 6 30126365 30126365 G A TRIM10 Silent p.F189F 0.31 TCGA-FW-A3R5-06 6 30134964 30134964 G A TRIM15 Silent p.R131R 0.17 TCGA-FW-A3R5-06 6 30139662 30139662 G A TRIM15 Missense_Mutation p.D312N 0.27 tolerated(0.06) benign(0.396) TCGA-FW-A3R5-06 6 30140207 30140207 G A TRIM15 3'UTR 0.16 TCGA-FW-A3R5-06 6 30521163 30521163 G A GNL1 Missense_Mutation p.P258S 0.24 deleterious(0.03) possibly_damaging(0.574) TCGA-FW-A3R5-06 6 30551997 30551997 C T ABCF1 Silent p.V377V 0.08 TCGA-FW-A3R5-06 6 30572209 30572209 C T PPP1R10 Silent p.R394R 0.30 TCGA-FW-A3R5-06 6 30632987 30632987 C A DHX16 Missense_Mutation p.W329L 0.20 deleterious(0.02) unknown(0) TCGA-FW-A3R5-06 6 30652329 30652329 G A PPP1R18 Silent p.T489T 0.14 TCGA-FW-A3R5-06 6 30658642 30658642 C T NRM Missense_Mutation p.G37E 0.16 tolerated(0.62) benign(0.01) TCGA-FW-A3R5-06 6 30670603 30670603 G A MDC1 Missense_Mutation p.P1973S 0.22 deleterious(0.02) possibly_damaging(0.893) TCGA-FW-A3R5-06 6 30672584 30672584 G A MDC1 Missense_Mutation p.T1459I 0.41 tolerated(0.09) possibly_damaging(0.879) TCGA-FW-A3R5-06 6 30680738 30680738 G A MDC1 Silent p.I327I 0.10 TCGA-FW-A3R5-06 6 30681077 30681077 G A MDC1 Silent p.F214F 0.15 TCGA-FW-A3R5-06 6 30858825 30858825 C T DDR1 Missense_Mutation p.R165C 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 30860294 30860294 C T DDR1 Silent p.L358L 0.09 TCGA-FW-A3R5-06 6 30864450 30864450 C T DDR1 Silent p.P559P 0.31 TCGA-FW-A3R5-06 6 30867096 30867096 C T DDR1 3'UTR 0.35 TCGA-FW-A3R5-06 6 30882558 30882558 C T VARS2 Intron 0.23 TCGA-FW-A3R5-06 6 30890998 30890998 C T VARS2 Missense_Mutation p.P798L 0.18 tolerated(0.12) benign(0.007) TCGA-FW-A3R5-06 6 30951874 30951874 C T MUC21 Intron 0.24 TCGA-FW-A3R5-06 6 30954940 30954940 G A MUC21 Missense_Mutation p.A330T 0.07 tolerated(0.46) unknown(0) TCGA-FW-A3R5-06 6 31079453 31079453 C T C6orf15 Missense_Mutation p.G228E 0.09 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 6 31079766 31079766 C T C6orf15 Missense_Mutation p.E124K 0.16 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 6 31079984 31079984 G A C6orf15 Missense_Mutation p.S51F 0.29 tolerated(0.21) benign(0.278) TCGA-FW-A3R5-06 6 31084214 31084214 G A CDSN Missense_Mutation p.P393L 0.50 tolerated_low_confidence(0.74) unknown(0) TCGA-FW-A3R5-06 6 31084467 31084467 G A CDSN Missense_Mutation p.P309S 0.09 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 6 31105856 31105856 G A PSORS1C2 Missense_Mutation p.P95S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 6 31133882 31133882 C T POU5F1 Intron 0.39 TCGA-FW-A3R5-06 6 31138004 31138004 T A POU5F1 Missense_Mutation p.N132Y 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 6 31322989 31322989 G A HLA-B Nonsense_Mutation p.Q303* 0.29 TCGA-FW-A3R5-06 6 31378943 31378943 C T MICA Silent p.F140F 0.41 TCGA-FW-A3R5-06 6 31473487 31473487 C T MICB Missense_Mutation p.P55L 0.29 tolerated(0.88) benign(0.079) TCGA-FW-A3R5-06 6 31474869 31474869 C T MICB Silent p.S228S 0.22 TCGA-FW-A3R5-06 6 31503091 31503091 G A DDX39B Intron 0.32 TCGA-FW-A3R5-06 6 31540583 31540583 C T LTA Silent p.L22L 0.22 TCGA-FW-A3R5-06 6 31540725 31540725 C T LTA Silent p.L40L 0.09 TCGA-FW-A3R5-06 6 31541393 31541393 C T LTA Silent p.L181L 0.21 TCGA-FW-A3R5-06 6 31541429 31541429 C T LTA Missense_Mutation p.L193F 0.30 tolerated(0.73) benign(0.043) TCGA-FW-A3R5-06 6 31545322 31545322 G A TNF 3'UTR 0.51 TCGA-FW-A3R5-06 6 31556566 31556566 G A LST1 3'UTR 0.22 TCGA-FW-A3R5-06 6 31557903 31557903 C T NCR3 Missense_Mutation p.G15E 0.32 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 6 31560469 31560469 G A NCR3 Silent p.I10I 0.11 TCGA-FW-A3R5-06 6 31583856 31583856 C T AIF1 Intron 0.20 TCGA-FW-A3R5-06 6 31593601 31593601 C T PRRC2A Silent p.P264P 0.16 TCGA-FW-A3R5-06 6 31599462 31599462 C T PRRC2A Silent p.S1004S 0.32 TCGA-FW-A3R5-06 6 31692665 31692665 G A C6orf25 Intron 0.25 TCGA-FW-A3R5-06 6 31728484 31728484 C T MSH5 Silent p.F610F 0.30 TCGA-FW-A3R5-06 6 31736914 31736914 G A VWA7 Missense_Mutation p.P462S 0.18 deleterious(0.04) benign(0.254) TCGA-FW-A3R5-06 6 31743748 31743748 G A VWA7 Missense_Mutation p.A169V 0.34 deleterious(0) possibly_damaging(0.625) TCGA-FW-A3R5-06 6 31743776 31743776 G A VWA7 Missense_Mutation p.R160C 0.34 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 6 31743967 31743967 G A VWA7 Missense_Mutation p.S96F 0.26 tolerated(0.07) benign(0.002) TCGA-FW-A3R5-06 6 31777774 31777774 G A HSPA1L 3'UTR 0.34 TCGA-FW-A3R5-06 6 31778336 31778336 C T HSPA1L Missense_Mutation p.G472R 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-FW-A3R5-06 6 31778337 31778337 C T HSPA1L Silent p.R471R 0.29 TCGA-FW-A3R5-06 6 31778460 31778460 G A HSPA1L Silent p.F430F 0.35 TCGA-FW-A3R5-06 6 31778532 31778532 C T HSPA1L Silent p.E406E 0.16 TCGA-FW-A3R5-06 6 31779004 31779004 C T HSPA1L Missense_Mutation p.R249K 0.28 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-FW-A3R5-06 6 31847844 31847844 G T EHMT2 3'UTR 0.42 TCGA-FW-A3R5-06 6 31852266 31852266 G A EHMT2 Missense_Mutation p.P892S 0.29 tolerated(1) benign(0.186) TCGA-FW-A3R5-06 6 31895378 31895378 C T C2 5'UTR 0.14 TCGA-FW-A3R5-06 6 31895859 31895859 C T CFB Silent p.S58S 0.17 TCGA-FW-A3R5-06 6 31896655 31896655 G A CFB Intron 0.30 TCGA-FW-A3R5-06 6 31901450 31901450 A T C2 Missense_Mutation p.H169L 0.25 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 31901501 31901501 C T CFB Missense_Mutation p.S124F 0.25 deleterious(0) benign(0.124) TCGA-FW-A3R5-06 6 31902026 31902026 G A C2 Missense_Mutation p.E267K 0.21 tolerated(0.49) benign(0.017) TCGA-FW-A3R5-06 6 31914248 31914248 G A CFB Missense_Mutation p.G557S 0.29 deleterious(0) probably_damaging(0.941) TCGA-FW-A3R5-06 6 31914822 31914822 G A CFB Missense_Mutation p.E615K 0.31 tolerated(0.86) benign(0.06) TCGA-FW-A3R5-06 6 31914886 31914886 G A CFB Missense_Mutation p.G636D 0.29 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 6 31915571 31915571 C T CFB Silent p.S739S 0.32 TCGA-FW-A3R5-06 6 31919954 31919954 G A NELFE 3'UTR 0.33 TCGA-FW-A3R5-06 6 31921902 31921902 G A NELFE Silent p.F299F 0.25 TCGA-FW-A3R5-06 6 31931244 31931244 C T SKIV2L Silent p.P486P 0.20 TCGA-FW-A3R5-06 6 31997527 31997527 C T C4B Silent p.A1287A 0.20 TCGA-FW-A3R5-06 6 31997551 31997551 C T C4B Silent p.F1295F 0.15 TCGA-FW-A3R5-06 6 32008204 32008204 G A CYP21A2 Missense_Mutation p.E321K 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 32008968 32008968 G A CYP21A2 3'UTR 0.41 TCGA-FW-A3R5-06 6 32010369 32010369 G A TNXB Missense_Mutation p.P454S 0.35 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 6 32012969 32012969 C T TNXB Missense_Mutation p.G10S 0.25 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 6 32014099 32014099 C T TNXB 5'Flank 0.20 TCGA-FW-A3R5-06 6 32017145 32017145 G A TNXB 5'Flank 0.37 TCGA-FW-A3R5-06 6 32020752 32020752 G A TNXB Missense_Mutation p.P2935L 0.26 probably_damaging(0.958) TCGA-FW-A3R5-06 6 32020753 32020753 G A TNXB Missense_Mutation p.P2935S 0.25 probably_damaging(0.932) TCGA-FW-A3R5-06 6 32024360 32024360 C T TNXB Intron 0.21 TCGA-FW-A3R5-06 6 32035662 32035662 G A TNXB Missense_Mutation p.S2107F 0.36 possibly_damaging(0.748) TCGA-FW-A3R5-06 6 32036794 32036794 C T TNXB Missense_Mutation p.V1903M 0.31 probably_damaging(0.996) TCGA-FW-A3R5-06 6 32037544 32037544 G A TNXB Silent p.S1791S 0.20 TCGA-FW-A3R5-06 6 32037621 32037621 C T TNXB Missense_Mutation p.D1766N 0.26 benign(0.01) TCGA-FW-A3R5-06 6 32041710 32041710 G A RNA5SP206 3'Flank 0.35 TCGA-FW-A3R5-06 6 32050005 32050005 G A RNA5SP206 5'Flank 0.23 TCGA-FW-A3R5-06 6 32053653 32053653 G A TNXB Silent p.L1008L 0.33 TCGA-FW-A3R5-06 6 32065044 32065044 G A TNXB Missense_Mutation p.R196C 0.25 probably_damaging(0.988) TCGA-FW-A3R5-06 6 32065162 32065162 A T TNXB Nonsense_Mutation p.C156* 0.22 TCGA-FW-A3R5-06 6 32065163 32065163 C T TNXB Missense_Mutation p.C156Y 0.22 probably_damaging(0.983) TCGA-FW-A3R5-06 6 32089063 32089063 G A ATF6B Missense_Mutation p.L181F 0.17 tolerated(0.09) benign(0.016) TCGA-FW-A3R5-06 6 32089086 32089086 G A ATF6B Missense_Mutation p.S173F 0.28 deleterious(0) probably_damaging(0.95) TCGA-FW-A3R5-06 6 32119692 32119692 G A PRRT1 5'UTR 0.11 TCGA-FW-A3R5-06 6 32172034 32172034 C T NOTCH4 Missense_Mutation p.G1000R 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 32178697 32178697 G A NOTCH4 Silent p.S899S 0.20 TCGA-FW-A3R5-06 6 32181595 32181595 C T NOTCH4 Missense_Mutation p.M730I 0.26 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 32183144 32183144 G A NOTCH4 Missense_Mutation p.P627L 0.23 tolerated(0.43) benign(0.006) TCGA-FW-A3R5-06 6 32187941 32187941 G A NOTCH4 Missense_Mutation p.P427L 0.26 tolerated(0.14) benign(0.068) TCGA-FW-A3R5-06 6 32188210 32188210 G A NOTCH4 Silent p.F377F 0.20 TCGA-FW-A3R5-06 6 32188904 32188904 G A NOTCH4 Missense_Mutation p.S217F 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 32189084 32189084 C T NOTCH4 Missense_Mutation p.R157Q 0.36 tolerated(0.55) benign(0.012) TCGA-FW-A3R5-06 6 3224954 3224954 C T TUBB2B 3'UTR 0.10 TCGA-FW-A3R5-06 6 3225596 3225596 G A TUBB2B Missense_Mutation p.P243S 0.47 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-FW-A3R5-06 6 3225858 3225858 G A TUBB2B Silent p.I155I 0.21 TCGA-FW-A3R5-06 6 32260977 32260977 C T C6orf10 Silent p.E491E 0.05 TCGA-FW-A3R5-06 6 32261345 32261345 C T C6orf10 Missense_Mutation p.E369K 0.26 tolerated(0.98) benign(0.013) TCGA-FW-A3R5-06 6 32362678 32362678 C T BTNL2 Silent p.T401T 0.11 TCGA-FW-A3R5-06 6 32370911 32370911 G A BTNL2 Silent p.F170F 0.17 TCGA-FW-A3R5-06 6 32411228 32411228 C T HLA-DRA Missense_Mutation p.L199F 0.18 tolerated(0.08) possibly_damaging(0.764) TCGA-FW-A3R5-06 6 32609298 32609298 C T HLA-DQA1 Silent p.I98I 0.68 TCGA-FW-A3R5-06 6 32634279 32634279 G A HLA-DQB1 Missense_Mutation p.P36S 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 6 32713033 32713033 G A HLA-DQA2 Silent p.V60V 0.22 TCGA-FW-A3R5-06 6 32713809 32713809 G A HLA-DQA2 Silent p.V191V 0.06 TCGA-FW-A3R5-06 6 32782259 32782259 C T HLA-DOB Missense_Mutation p.G161R 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-FW-A3R5-06 6 32798475 32798475 G A TAP2 Missense_Mutation p.P461S 0.36 deleterious(0) probably_damaging(0.941) TCGA-FW-A3R5-06 6 32918430 32918430 G A HLA-DMA Missense_Mutation p.P80L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 32974419 32974419 G A HLA-DOA 3'UTR 0.38 TCGA-FW-A3R5-06 6 32975359 32975359 C T HLA-DOA Silent p.R114R 0.34 TCGA-FW-A3R5-06 6 32975941 32975941 C T HLA-DOA Silent p.V60V 0.27 TCGA-FW-A3R5-06 6 32976131 32976131 C T HLA-DOA Intron 0.37 TCGA-FW-A3R5-06 6 33048721 33048721 G A HLA-DPB1 Intron 0.20 TCGA-FW-A3R5-06 6 33052914 33052914 C T HLA-DPB1 Silent p.I184I 0.27 TCGA-FW-A3R5-06 6 33133532 33133532 G A COL11A2 Missense_Mutation p.S1429L 0.29 unknown(0) TCGA-FW-A3R5-06 6 33134586 33134586 C T COL11A2 Missense_Mutation p.G1331R 0.09 unknown(0) TCGA-FW-A3R5-06 6 33134870 33134870 C T COL11A2 Missense_Mutation p.D1317N 0.10 unknown(0) TCGA-FW-A3R5-06 6 33135598 33135598 C T COL11A2 Missense_Mutation p.R1245Q 0.27 unknown(0) TCGA-FW-A3R5-06 6 33140081 33140081 G A COL11A2 Silent p.G905G 0.27 TCGA-FW-A3R5-06 6 33141495 33141495 C T COL11A2 Missense_Mutation p.G785R 0.37 probably_damaging(0.979) TCGA-FW-A3R5-06 6 33144259 33144259 G A COL11A2 Missense_Mutation p.P621L 0.30 possibly_damaging(0.851) TCGA-FW-A3R5-06 6 33152024 33152024 G A COL11A2 Intron 0.28 TCGA-FW-A3R5-06 6 33154504 33154504 C T COL11A2 Missense_Mutation p.R233K 0.30 benign(0.021) TCGA-FW-A3R5-06 6 33246057 33246057 C T B3GALT4 Silent p.L287L 0.31 TCGA-FW-A3R5-06 6 33281164 33281164 G A TAPBP Missense_Mutation p.P100L 0.11 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 6 33289581 33289581 G A DAXX Missense_Mutation p.S41F 0.33 deleterious(0.04) possibly_damaging(0.777) TCGA-FW-A3R5-06 6 33290743 33290743 G A DAXX 5'UTR 0.30 TCGA-FW-A3R5-06 6 33373143 33373143 C T KIFC1 Missense_Mutation p.P424L 0.22 tolerated(0.07) possibly_damaging(0.869) TCGA-FW-A3R5-06 6 33399952 33399952 C T SYNGAP1 Missense_Mutation p.R104C 0.31 deleterious(0.01) possibly_damaging(0.684) TCGA-FW-A3R5-06 6 33423832 33423832 G A ZBTB9 Missense_Mutation p.E319K 0.13 tolerated(0.11) benign(0.003) TCGA-FW-A3R5-06 6 33623571 33623571 C T ITPR3 Silent p.N63N 0.10 TCGA-FW-A3R5-06 6 33648129 33648129 C T ITPR3 Silent p.F1416F 0.26 TCGA-FW-A3R5-06 6 33693290 33693290 C T IP6K3 Silent p.K231K 0.25 TCGA-FW-A3R5-06 6 33695869 33695869 C T IP6K3 Silent p.K136K 0.29 TCGA-FW-A3R5-06 6 34003641 34003641 G A GRM4 Missense_Mutation p.S749L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 6 34003736 34003736 C T GRM4 Nonsense_Mutation p.W717* 0.14 TCGA-FW-A3R5-06 6 34003955 34003955 G A GRM4 Silent p.I644I 0.35 TCGA-FW-A3R5-06 6 34004133 34004133 G A GRM4 Missense_Mutation p.S585L 0.36 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 6 34004285 34004285 C T GRM4 Silent p.K534K 0.26 TCGA-FW-A3R5-06 6 34026758 34026758 G A GRM4 Silent p.S340S 0.21 TCGA-FW-A3R5-06 6 34100769 34100769 G A GRM4 Missense_Mutation p.L169F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 6 34497596 34497596 C T PACSIN1 Missense_Mutation p.L256F 0.30 deleterious(0) benign(0.426) TCGA-FW-A3R5-06 6 34826110 34826110 C T UHRF1BP1 Silent p.S659S 0.28 TCGA-FW-A3R5-06 6 348961 348961 C T DUSP22 Intron 0.20 TCGA-FW-A3R5-06 6 35086057 35086057 C T TCP11 Missense_Mutation p.E514K 0.09 tolerated(0.13) benign(0.019) TCGA-FW-A3R5-06 6 35289050 35289050 C T DEF6 Missense_Mutation p.R587C 0.28 deleterious(0) benign(0.061) TCGA-FW-A3R5-06 6 35387967 35387967 C T PPARD Missense_Mutation p.A65V 0.30 tolerated(0.58) benign(0.002) TCGA-FW-A3R5-06 6 35392492 35392492 C T PPARD Silent p.F338F 0.43 TCGA-FW-A3R5-06 6 35473605 35473605 C T TULP1 Missense_Mutation p.R342Q 0.33 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 6 35477696 35477696 C T TULP1 Missense_Mutation p.G170E 0.27 tolerated_low_confidence(0.1) benign(0.008) TCGA-FW-A3R5-06 6 35543560 35543560 C T FKBP5 3'UTR 0.22 TCGA-FW-A3R5-06 6 35544969 35544969 C T FKBP5 Silent p.R356R 0.07 TCGA-FW-A3R5-06 6 35545003 35545003 C T FKBP5 Missense_Mutation p.G345E 0.22 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 6 35547981 35547981 C T FKBP5 Silent p.Q286Q 0.08 TCGA-FW-A3R5-06 6 35587930 35587930 C T FKBP5 Silent p.S124S 0.29 TCGA-FW-A3R5-06 6 35755830 35755830 C T CLPSL1 3'UTR 0.14 TCGA-FW-A3R5-06 6 35765005 35765005 G A CLPS Missense_Mutation p.P21S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 6 35837432 35837432 G A SRPK1 Missense_Mutation p.S413F 0.25 tolerated(0.17) benign(0.057) TCGA-FW-A3R5-06 6 35923030 35923030 G A SLC26A8 Missense_Mutation p.P711S 0.29 deleterious(0.01) possibly_damaging(0.686) TCGA-FW-A3R5-06 6 35923043 35923043 C T SLC26A8 Silent p.R706R 0.34 TCGA-FW-A3R5-06 6 35927567 35927567 C T SLC26A8 Missense_Mutation p.G552E 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 35945118 35945118 G A SLC26A8 Missense_Mutation p.P346S 0.21 deleterious(0) benign(0.314) TCGA-FW-A3R5-06 6 35949969 35949969 G A SLC26A8 Silent p.F318F 0.29 TCGA-FW-A3R5-06 6 36040749 36040749 C T MAPK14 Silent p.L135L 0.26 TCGA-FW-A3R5-06 6 36099123 36099123 C T MAPK13 Silent p.F65F 0.14 TCGA-FW-A3R5-06 6 36181711 36181711 C T BRPF3 Missense_Mutation p.S846F 0.09 tolerated(0.08) possibly_damaging(0.736) TCGA-FW-A3R5-06 6 36259149 36259149 C T PNPLA1 Silent p.F86F 0.26 TCGA-FW-A3R5-06 6 36260883 36260883 C T PNPLA1 Missense_Mutation p.P162S 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 36269678 36269678 C T PNPLA1 Silent p.F272F 0.28 TCGA-FW-A3R5-06 6 36287141 36287141 C T C6orf222 Missense_Mutation p.D639N 0.24 tolerated(0.11) benign(0.065) TCGA-FW-A3R5-06 6 36492232 36492232 G A STK38 Silent p.L64L 0.28 TCGA-FW-A3R5-06 6 36714235 36714235 G A CPNE5 Missense_Mutation p.P380S 0.15 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 6 36716041 36716041 G A CPNE5 Silent p.T325T 0.10 TCGA-FW-A3R5-06 6 36766013 36766013 G A CPNE5 Silent p.F111F 0.31 TCGA-FW-A3R5-06 6 36882161 36882161 C T C6orf89 Silent p.L176L 0.25 TCGA-FW-A3R5-06 6 36982421 36982421 G A FGD2 Splice_Site p.X275_splice 0.28 TCGA-FW-A3R5-06 6 36982475 36982475 G A FGD2 Missense_Mutation p.E293K 0.33 tolerated(1) possibly_damaging(0.504) TCGA-FW-A3R5-06 6 36982672 36982672 G A FGD2 Missense_Mutation p.R296Q 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-FW-A3R5-06 6 36982673 36982673 G A FGD2 Silent p.R296R 0.24 TCGA-FW-A3R5-06 6 36995279 36995279 G A FGD2 Silent p.K560K 0.16 TCGA-FW-A3R5-06 6 37328278 37328278 C T RNF8 Silent p.P56P 0.22 TCGA-FW-A3R5-06 6 37605969 37605969 C T MDGA1 Intron 0.40 TCGA-FW-A3R5-06 6 3850651 3850651 G A FAM50B Silent p.R202R 0.40 TCGA-FW-A3R5-06 6 38690581 38690581 G A DNAH8 5'Flank 0.24 TCGA-FW-A3R5-06 6 38702259 38702259 G A DNAH8 5'UTR 0.22 TCGA-FW-A3R5-06 6 38704876 38704876 G A DNAH8 Missense_Mutation p.G49R 0.24 possibly_damaging(0.615) TCGA-FW-A3R5-06 6 38723748 38723748 G A DNAH8 Missense_Mutation p.V253I 0.28 benign(0.135) TCGA-FW-A3R5-06 6 38743715 38743715 C T DNAH8 Silent p.I433I 0.28 TCGA-FW-A3R5-06 6 38750779 38750779 G A DNAH8 Splice_Site p.X537_splice 0.23 TCGA-FW-A3R5-06 6 38750845 38750845 C T DNAH8 Silent p.S558S 0.29 TCGA-FW-A3R5-06 6 38758068 38758068 G A DNAH8 Missense_Mutation p.E673K 0.11 probably_damaging(0.951) TCGA-FW-A3R5-06 6 38783393 38783393 G A DNAH8 Silent p.V944V 0.17 TCGA-FW-A3R5-06 6 38793958 38793958 G A DNAH8 Missense_Mutation p.E1075K 0.22 probably_damaging(0.999) TCGA-FW-A3R5-06 6 38793988 38793988 C T DNAH8 Nonsense_Mutation p.R1085* 0.26 TCGA-FW-A3R5-06 6 38802355 38802355 G A DNAH8 Missense_Mutation p.E1218K 0.25 benign(0.004) TCGA-FW-A3R5-06 6 38805726 38805726 C T DNAH8 Silent p.F1241F 0.29 TCGA-FW-A3R5-06 6 38813452 38813452 G A DNAH8 Missense_Mutation p.G1433R 0.12 benign(0.051) TCGA-FW-A3R5-06 6 38830179 38830179 C T DNAH8 Silent p.V1868V 0.24 TCGA-FW-A3R5-06 6 38830220 38830220 G A DNAH8 Missense_Mutation p.G1882E 0.30 probably_damaging(1) TCGA-FW-A3R5-06 6 38835841 38835841 C T DNAH8 Missense_Mutation p.H2016Y 0.22 probably_damaging(0.998) TCGA-FW-A3R5-06 6 38840443 38840443 G A DNAH8 Missense_Mutation p.M2157I 0.26 probably_damaging(0.919) TCGA-FW-A3R5-06 6 38843566 38843566 C T DNAH8 Missense_Mutation p.S2390L 0.26 benign(0.024) TCGA-FW-A3R5-06 6 38851680 38851680 G A DNAH8 Missense_Mutation p.R2505Q 0.35 probably_damaging(1) TCGA-FW-A3R5-06 6 38858489 38858489 G A DNAH8 Missense_Mutation p.M2628I 0.29 benign(0.002) TCGA-FW-A3R5-06 6 38862636 38862636 G A DNAH8 Missense_Mutation p.D2698N 0.43 probably_damaging(1) TCGA-FW-A3R5-06 6 38877379 38877379 G A DNAH8 Missense_Mutation p.R2983K 0.09 benign(0.002) TCGA-FW-A3R5-06 6 38877381 38877381 G A DNAH8 Missense_Mutation p.E2984K 0.27 possibly_damaging(0.88) TCGA-FW-A3R5-06 6 38877410 38877410 C T DNAH8 Silent p.F2993F 0.24 TCGA-FW-A3R5-06 6 38885838 38885838 G A DNAH8 Silent p.G3265G 0.29 TCGA-FW-A3R5-06 6 38897326 38897326 G A DNAH8 Missense_Mutation p.E3503K 0.30 probably_damaging(1) TCGA-FW-A3R5-06 6 38903382 38903382 G A DNAH8 Silent p.E3607E 0.32 TCGA-FW-A3R5-06 6 38917285 38917285 G A DNAH8 Missense_Mutation p.E3846K 0.19 benign(0.388) TCGA-FW-A3R5-06 6 38917344 38917344 C T DNAH8 Silent p.I3865I 0.15 TCGA-FW-A3R5-06 6 38939413 38939413 G A DNAH8 Missense_Mutation p.R3949Q 0.19 probably_damaging(0.991) TCGA-FW-A3R5-06 6 38950158 38950158 C T DNAH8 Missense_Mutation p.P4074S 0.06 probably_damaging(0.956) TCGA-FW-A3R5-06 6 38952011 38952011 G A DNAH8 Missense_Mutation p.M4110I 0.14 probably_damaging(0.999) TCGA-FW-A3R5-06 6 38957887 38957887 C T DNAH8 Nonsense_Mutation p.Q4168* 0.25 TCGA-FW-A3R5-06 6 38997934 38997934 G A DNAH8 Silent p.R4413R 0.18 TCGA-FW-A3R5-06 6 39158831 39158831 C T KCNK5 Silent p.G445G 0.29 TCGA-FW-A3R5-06 6 39159080 39159080 C T KCNK5 Silent p.L362L 0.25 TCGA-FW-A3R5-06 6 39159259 39159259 C T KCNK5 Missense_Mutation p.D303N 0.24 deleterious(0.04) probably_damaging(0.98) TCGA-FW-A3R5-06 6 39159484 39159484 C T KCNK5 Missense_Mutation p.E228K 0.63 deleterious(0.05) possibly_damaging(0.836) TCGA-FW-A3R5-06 6 39267378 39267378 G A KCNK17 Missense_Mutation p.S275F 0.31 tolerated(0.06) possibly_damaging(0.646) TCGA-FW-A3R5-06 6 39282754 39282754 G A KCNK16 3'UTR 0.13 TCGA-FW-A3R5-06 6 39313473 39313473 G A KIF6 Intron 0.27 TCGA-FW-A3R5-06 6 39325115 39325115 C T KIF6 Silent p.T706T 0.29 TCGA-FW-A3R5-06 6 39563886 39563886 C T KIF6 Missense_Mutation p.G264S 0.18 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 6 39883840 39883840 G A MOCS1 Silent p.A185A 0.21 TCGA-FW-A3R5-06 6 39895211 39895211 G A MOCS1 Missense_Mutation p.P36L 0.26 deleterious(0.03) benign(0.008) TCGA-FW-A3R5-06 6 39895225 39895225 G A MOCS1 Silent p.G31G 0.45 TCGA-FW-A3R5-06 6 39895244 39895244 G A MOCS1 Missense_Mutation p.S25F 0.39 tolerated(0.73) benign(0.006) TCGA-FW-A3R5-06 6 40359664 40359664 G A LRFN2 3'UTR 0.12 TCGA-FW-A3R5-06 6 40399472 40399472 C T LRFN2 Missense_Mutation p.D461N 0.29 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 6 40400463 40400463 G A LRFN2 Silent p.I130I 0.20 TCGA-FW-A3R5-06 6 40400505 40400505 C T LRFN2 Silent p.G116G 0.36 TCGA-FW-A3R5-06 6 4069536 4069536 T G FAM217A Missense_Mutation p.R307S 0.33 deleterious(0) possibly_damaging(0.869) TCGA-FW-A3R5-06 6 4069751 4069751 C T FAM217A Missense_Mutation p.E236K 0.28 tolerated(0.17) possibly_damaging(0.544) TCGA-FW-A3R5-06 6 4087912 4087912 C T C6orf201 Silent p.L13L 0.31 TCGA-FW-A3R5-06 6 41011919 41011919 G A TSPO2 3'UTR 0.36 TCGA-FW-A3R5-06 6 41029269 41029269 G A APOBEC2 Missense_Mutation p.D112N 0.26 tolerated(0.29) benign(0.186) TCGA-FW-A3R5-06 6 41117391 41117391 G A TREML1 Missense_Mutation p.S296L 0.27 deleterious(0.01) benign(0.436) TCGA-FW-A3R5-06 6 41121769 41121769 G A TREML1 Silent p.L35L 0.26 TCGA-FW-A3R5-06 6 41121799 41121799 C T TREML1 Missense_Mutation p.V25M 0.23 tolerated(0.07) benign(0.137) TCGA-FW-A3R5-06 6 41126689 41126689 C T TREM2 Missense_Mutation p.G200R 0.26 tolerated(0.9) benign(0.012) TCGA-FW-A3R5-06 6 41165887 41165887 G A TREML2 Silent p.I112I 0.17 TCGA-FW-A3R5-06 6 41166002 41166002 C T TREML2 Missense_Mutation p.G74E 0.24 tolerated(0.08) possibly_damaging(0.811) TCGA-FW-A3R5-06 6 41243856 41243856 C T TREM1 3'UTR 0.17 TCGA-FW-A3R5-06 6 4130450 4130450 C T C6orf201 3'UTR 0.17 TCGA-FW-A3R5-06 6 4135832 4135832 G A ECI2 5'Flank 0.25 TCGA-FW-A3R5-06 6 41552569 41552569 C T FOXP4 Silent p.I121I 0.27 TCGA-FW-A3R5-06 6 41558063 41558063 C T FOXP4 Missense_Mutation p.T471I 0.27 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 41617481 41617481 G A MDFI Silent p.R128R 0.33 TCGA-FW-A3R5-06 6 41704679 41704679 G A PGC Silent p.L360L 0.25 TCGA-FW-A3R5-06 6 41710071 41710071 C T PGC Missense_Mutation p.E202K 0.32 deleterious(0.04) benign(0.02) TCGA-FW-A3R5-06 6 41774051 41774051 G A USP49 Missense_Mutation p.S224L 0.48 tolerated(0.24) benign(0.001) TCGA-FW-A3R5-06 6 41774231 41774231 C T USP49 Missense_Mutation p.R164Q 0.16 tolerated(0.61) possibly_damaging(0.54) TCGA-FW-A3R5-06 6 42034064 42034064 C T TAF8 Silent p.P168P 0.32 TCGA-FW-A3R5-06 6 42175825 42175825 G A MRPS10 3'UTR 0.26 TCGA-FW-A3R5-06 6 42196398 42196398 G A TRERF1 Silent p.F1096F 0.31 TCGA-FW-A3R5-06 6 42204020 42204020 G A TRERF1 Missense_Mutation p.P997S 0.21 tolerated(0.11) possibly_damaging(0.641) TCGA-FW-A3R5-06 6 42225911 42225911 G A TRERF1 Silent p.V766V 0.30 TCGA-FW-A3R5-06 6 42227377 42227377 G A TRERF1 Missense_Mutation p.R657W 0.11 deleterious(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 6 42231011 42231011 G A TRERF1 Intron 0.37 TCGA-FW-A3R5-06 6 42231188 42231188 G A TRERF1 Missense_Mutation p.P585L 0.23 deleterious(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 6 42236191 42236191 G A TRERF1 Nonsense_Mutation p.Q380* 0.21 TCGA-FW-A3R5-06 6 42237142 42237142 C T TRERF1 Missense_Mutation p.D63N 0.20 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-FW-A3R5-06 6 42571329 42571329 C T UBR2 Missense_Mutation p.P179S 0.42 tolerated(0.32) benign(0.06) TCGA-FW-A3R5-06 6 42797233 42797233 C T GLTSCR1L Missense_Mutation p.H388Y 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 6 42828080 42828080 C T GLTSCR1L Silent p.L779L 0.31 TCGA-FW-A3R5-06 6 42833145 42833145 C T GLTSCR1L Silent p.S1067S 0.28 TCGA-FW-A3R5-06 6 43034198 43034198 G A KLC4 Silent p.E260E 0.20 TCGA-FW-A3R5-06 6 43039079 43039079 C T KLC4 Missense_Mutation p.R426C 0.28 deleterious(0.02) benign(0.006) TCGA-FW-A3R5-06 6 43039885 43039885 C T KLC4 Silent p.S478S 0.06 TCGA-FW-A3R5-06 6 43099815 43099815 C T PTK7 Missense_Mutation p.R300W 0.30 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 6 43106982 43106982 G A PTK7 Missense_Mutation p.E499K 0.37 tolerated(0.29) possibly_damaging(0.541) TCGA-FW-A3R5-06 6 43109528 43109528 C T PTK7 Missense_Mutation p.R589C 0.25 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 6 43109933 43109933 C T PTK7 Missense_Mutation p.S656F 0.27 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 6 43153697 43153697 C T CUL9 Missense_Mutation p.P252L 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 43214429 43214429 G A TTBK1 Missense_Mutation p.E11K 0.21 possibly_damaging(0.736) TCGA-FW-A3R5-06 6 43214476 43214476 C T TTBK1 Silent p.A26A 0.30 TCGA-FW-A3R5-06 6 43226909 43226909 C T TTBK1 Missense_Mutation p.P384S 0.20 benign(0.014) TCGA-FW-A3R5-06 6 43230915 43230915 G A TTBK1 Missense_Mutation p.E605K 0.30 probably_damaging(0.91) TCGA-FW-A3R5-06 6 43237428 43237428 C T TTBK1 Intron 0.35 TCGA-FW-A3R5-06 6 43250649 43250649 C T TTBK1 Missense_Mutation p.P724L 0.41 benign(0.039) TCGA-FW-A3R5-06 6 43250678 43250678 G A TTBK1 Missense_Mutation p.E734K 0.42 benign(0.002) TCGA-FW-A3R5-06 6 43251399 43251399 G A TTBK1 Missense_Mutation p.G974E 0.40 benign(0.007) TCGA-FW-A3R5-06 6 43251400 43251400 G A TTBK1 Silent p.G974G 0.41 TCGA-FW-A3R5-06 6 43268903 43268903 G A SLC22A7 Silent p.L286L 0.33 TCGA-FW-A3R5-06 6 43269342 43269342 G A SLC22A7 Missense_Mutation p.G325R 0.34 tolerated(0.54) benign(0.005) TCGA-FW-A3R5-06 6 43269343 43269343 G A SLC22A7 Missense_Mutation p.G325E 0.33 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 6 43272554 43272554 G A SLC22A7 3'UTR 0.35 TCGA-FW-A3R5-06 6 43322566 43322566 G A ZNF318 Missense_Mutation p.R836C 0.10 probably_damaging(0.999) TCGA-FW-A3R5-06 6 43325361 43325361 G A ZNF318 Silent p.L231L 0.23 TCGA-FW-A3R5-06 6 43325417 43325417 G A ZNF318 Missense_Mutation p.P212L 0.27 benign(0.23) TCGA-FW-A3R5-06 6 43400228 43400228 C T ABCC10 Silent p.A170A 0.34 TCGA-FW-A3R5-06 6 43400359 43400359 C T ABCC10 Missense_Mutation p.A214V 0.29 deleterious(0) benign(0.309) TCGA-FW-A3R5-06 6 43413570 43413570 C T ABCC10 Silent p.S1088S 0.26 TCGA-FW-A3R5-06 6 43416923 43416923 C T ABCC10 Missense_Mutation p.A1395V 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 43481164 43481164 G A YIPF3 Missense_Mutation p.P156L 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 43484866 43484866 G A POLR1C Missense_Mutation p.V7M 0.23 tolerated(0.36) benign(0.04) TCGA-FW-A3R5-06 6 43550847 43550847 C T POLH Missense_Mutation p.R81C 0.28 deleterious(0.01) possibly_damaging(0.879) TCGA-FW-A3R5-06 6 43968437 43968437 G A C6orf223 Silent p.R27R 0.27 TCGA-FW-A3R5-06 6 44081883 44081883 G A MRPL14 Silent p.A45A 0.09 TCGA-FW-A3R5-06 6 44102463 44102463 G A TMEM63B Missense_Mutation p.D48N 0.28 tolerated(0.82) possibly_damaging(0.558) TCGA-FW-A3R5-06 6 44102468 44102468 C T TMEM63B Silent p.F49F 0.29 TCGA-FW-A3R5-06 6 44114596 44114596 C T TMEM63B Silent p.P265P 0.32 TCGA-FW-A3R5-06 6 44118029 44118029 C T TMEM63B Missense_Mutation p.P530L 0.31 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 6 44147827 44147827 C T CAPN11 Missense_Mutation p.P523S 0.36 deleterious(0.02) possibly_damaging(0.863) TCGA-FW-A3R5-06 6 44197806 44197806 C T SLC29A1 Intron 0.16 TCGA-FW-A3R5-06 6 44198553 44198553 C T SLC29A1 Silent p.F231F 0.24 TCGA-FW-A3R5-06 6 44250212 44250212 C T TCTE1 Missense_Mutation p.E311K 0.07 deleterious(0.04) benign(0.33) TCGA-FW-A3R5-06 6 44253805 44253805 C T TCTE1 Missense_Mutation p.D248N 0.27 tolerated(0.08) benign(0.026) TCGA-FW-A3R5-06 6 44274833 44274833 G A AARS2 Intron 0.33 TCGA-FW-A3R5-06 6 44310751 44310751 T A SPATS1 5'UTR 0.37 TCGA-FW-A3R5-06 6 44371558 44371558 C T CDC5L Silent p.A184A 0.26 TCGA-FW-A3R5-06 6 44371764 44371764 C T CDC5L Missense_Mutation p.S253F 0.22 tolerated(0.05) benign(0.34) TCGA-FW-A3R5-06 6 44387268 44387268 T A CDC5L Missense_Mutation p.F392Y 0.26 deleterious(0) benign(0.264) TCGA-FW-A3R5-06 6 45882124 45882124 C T CLIC5 Silent p.K302K 0.09 TCGA-FW-A3R5-06 6 46107906 46107906 G A ENPP4 Missense_Mutation p.G196R 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 46129491 46129491 C T ENPP5 Splice_Site p.X336_splice 0.18 TCGA-FW-A3R5-06 6 46133190 46133190 G A ENPP5 Nonsense_Mutation p.Q314* 0.31 TCGA-FW-A3R5-06 6 46190769 46190769 C T RCAN2 3'UTR 0.46 TCGA-FW-A3R5-06 6 46214590 46214590 G A RCAN2 Missense_Mutation p.L156F 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 46604135 46604135 A C CYP39A1 Missense_Mutation p.D241E 0.21 tolerated(0.47) benign(0.033) TCGA-FW-A3R5-06 6 46656397 46656397 C T TDRD6 Missense_Mutation p.R178C 0.23 tolerated(0.08) benign(0.381) TCGA-FW-A3R5-06 6 46658501 46658501 C T TDRD6 Missense_Mutation p.A879V 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 46672983 46672983 C T PLA2G7 Missense_Mutation p.G366R 0.12 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 6 46766894 46766894 C T MEP1A Missense_Mutation p.P80S 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-FW-A3R5-06 6 46787381 46787381 G A MEP1A Missense_Mutation p.E166K 0.32 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 46797136 46797136 G T MEP1A Silent p.A324A 0.21 TCGA-FW-A3R5-06 6 46797278 46797278 C T MEP1A Missense_Mutation p.R372C 0.20 deleterious(0.03) benign(0.266) TCGA-FW-A3R5-06 6 46801018 46801018 G A MEP1A Missense_Mutation p.G451E 0.26 tolerated(0.07) benign(0.16) TCGA-FW-A3R5-06 6 46801068 46801068 G A MEP1A Missense_Mutation p.G468R 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 6 46806723 46806723 C T MEP1A Silent p.I697I 0.29 TCGA-FW-A3R5-06 6 46825863 46825863 C T GPR116 Intron 0.24 TCGA-FW-A3R5-06 6 46825915 46825915 C T GPR116 Missense_Mutation p.G1242E 0.29 tolerated(0.06) benign(0.119) TCGA-FW-A3R5-06 6 46825952 46825952 G A GPR116 Missense_Mutation p.L1230F 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 46826217 46826217 G A GPR116 Silent p.A1141A 0.20 TCGA-FW-A3R5-06 6 46827113 46827113 G A GPR116 Missense_Mutation p.P843S 0.33 tolerated(0.21) benign(0.004) TCGA-FW-A3R5-06 6 46851304 46851304 C T GPR116 Missense_Mutation p.E202K 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 46976894 46976894 G A GPR110 Silent p.F759F 0.34 TCGA-FW-A3R5-06 6 46976939 46976939 G A GPR110 Silent p.L744L 0.23 TCGA-FW-A3R5-06 6 46989702 46989702 C T GPR110 Missense_Mutation p.E182K 0.31 deleterious(0.02) benign(0.086) TCGA-FW-A3R5-06 6 47253785 47253785 G A TNFRSF21 Missense_Mutation p.P215S 0.16 tolerated(0.75) benign(0.001) TCGA-FW-A3R5-06 6 47650116 47650116 C T GPR111 Silent p.F607F 0.23 TCGA-FW-A3R5-06 6 47650329 47650329 C T GPR111 Silent p.F678F 0.29 TCGA-FW-A3R5-06 6 47675066 47675066 C T GPR115 Missense_Mutation p.H29Y 0.07 tolerated(0.47) benign(0.004) TCGA-FW-A3R5-06 6 47678608 47678608 G A GPR115 Missense_Mutation p.E96K 0.33 tolerated(0.71) benign(0.073) TCGA-FW-A3R5-06 6 47680242 47680242 G A GPR115 Silent p.V150V 0.24 TCGA-FW-A3R5-06 6 47681866 47681866 C T GPR115 Silent p.F295F 0.33 TCGA-FW-A3R5-06 6 47682051 47682051 G A GPR115 Missense_Mutation p.R357K 0.23 tolerated(0.13) benign(0.075) TCGA-FW-A3R5-06 6 47846378 47846378 G A PTCHD4 Silent p.F734F 0.29 TCGA-FW-A3R5-06 6 47846645 47846645 G A PTCHD4 Silent p.P645P 0.18 TCGA-FW-A3R5-06 6 47976805 47976805 C T PTCHD4 Missense_Mutation p.E158K 0.25 tolerated(0.6) benign(0.055) TCGA-FW-A3R5-06 6 47976806 47976806 C T PTCHD4 Silent p.V157V 0.27 TCGA-FW-A3R5-06 6 488989 488989 C T EXOC2 Missense_Mutation p.A891T 0.30 tolerated(0.12) possibly_damaging(0.901) TCGA-FW-A3R5-06 6 4954357 4954357 C T CDYL 3'UTR 0.22 TCGA-FW-A3R5-06 6 49573445 49573445 G A RHAG 3'UTR 0.16 TCGA-FW-A3R5-06 6 49578756 49578756 C T RHAG Missense_Mutation p.A350T 0.37 tolerated(0.07) possibly_damaging(0.597) TCGA-FW-A3R5-06 6 49585792 49585792 C T RHAG Missense_Mutation p.E161K 0.11 tolerated(0.52) benign(0.049) TCGA-FW-A3R5-06 6 49585897 49585897 G A RHAG Silent p.L126L 0.32 TCGA-FW-A3R5-06 6 49663596 49663596 C T CRISP2 Missense_Mutation p.G186E 0.26 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 6 49667581 49667581 C T CRISP2 Silent p.T69T 0.40 TCGA-FW-A3R5-06 6 49668450 49668450 C T CRISP2 Silent p.R38R 0.22 TCGA-FW-A3R5-06 6 49700992 49700992 G A CRISP3 Missense_Mutation p.S169F 0.32 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 6 49753539 49753539 G A PGK2 3'UTR 0.38 TCGA-FW-A3R5-06 6 49753545 49753545 G A PGK2 3'UTR 0.33 TCGA-FW-A3R5-06 6 49754281 49754281 G A PGK2 Missense_Mutation p.P207L 0.26 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 6 49754377 49754377 G A PGK2 Missense_Mutation p.S175F 0.41 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 49754616 49754616 G A PGK2 Silent p.F95F 0.28 TCGA-FW-A3R5-06 6 49754690 49754690 G A PGK2 Missense_Mutation p.P71S 0.17 tolerated(0.17) benign(0.128) TCGA-FW-A3R5-06 6 49754848 49754848 C T PGK2 Missense_Mutation p.R18Q 0.29 deleterious(0.04) benign(0.374) TCGA-FW-A3R5-06 6 49806191 49806191 G A CRISP1 Missense_Mutation p.P194L 0.07 deleterious(0.02) probably_damaging(0.965) TCGA-FW-A3R5-06 6 49928133 49928133 G A DEFB114 Missense_Mutation p.R28C 0.19 deleterious_low_confidence(0) benign(0) TCGA-FW-A3R5-06 6 49989596 49989596 G A DEFB110 Missense_Mutation p.P18L 0.20 deleterious(0.01) benign(0.007) TCGA-FW-A3R5-06 6 50016297 50016297 G A DEFB112 Missense_Mutation p.S23F 0.17 deleterious(0) possibly_damaging(0.485) TCGA-FW-A3R5-06 6 50683114 50683114 G A TFAP2D Missense_Mutation p.E109K 0.13 tolerated(0.53) benign(0.021) TCGA-FW-A3R5-06 6 50740495 50740495 G A TFAP2D Missense_Mutation p.G426E 0.28 tolerated(0.17) benign(0.047) TCGA-FW-A3R5-06 6 51497470 51497470 C T PKHD1 Missense_Mutation p.R3853K 0.22 tolerated(0.94) benign(0.001) TCGA-FW-A3R5-06 6 51890209 51890209 C T PKHD1 Missense_Mutation p.G1467R 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-FW-A3R5-06 6 51893112 51893112 C T PKHD1 Missense_Mutation p.M1134I 0.23 deleterious(0.04) benign(0) TCGA-FW-A3R5-06 6 51900434 51900434 G A PKHD1 Silent p.V1061V 0.20 TCGA-FW-A3R5-06 6 51900495 51900495 C T PKHD1 Missense_Mutation p.G1041D 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 51921498 51921498 C T PKHD1 Missense_Mutation p.R564Q 0.29 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 6 51921502 51921502 C T PKHD1 Missense_Mutation p.E563K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 6 51923199 51923199 C T PKHD1 Silent p.L478L 0.28 TCGA-FW-A3R5-06 6 51936919 51936919 C T PKHD1 Missense_Mutation p.G199E 0.13 deleterious(0.04) benign(0.194) TCGA-FW-A3R5-06 6 52051206 52051206 C T IL17A 5'UTR 0.26 TCGA-FW-A3R5-06 6 52052496 52052496 C T IL17A Silent p.F41F 0.07 TCGA-FW-A3R5-06 6 52054096 52054096 C T IL17A 3'UTR 0.10 TCGA-FW-A3R5-06 6 52054140 52054140 G A IL17A 3'UTR 0.18 TCGA-FW-A3R5-06 6 52054155 52054155 G A IL17A 3'UTR 0.21 TCGA-FW-A3R5-06 6 52761661 52761661 C T GSTA3 Silent p.R204R 0.21 TCGA-FW-A3R5-06 6 52764807 52764807 T A GSTA3 Silent p.R113R 0.31 TCGA-FW-A3R5-06 6 52764831 52764831 C T GSTA3 Missense_Mutation p.M105I 0.24 tolerated(0.07) benign(0.004) TCGA-FW-A3R5-06 6 52880906 52880906 G A ICK Missense_Mutation p.P269L 0.31 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 6 52902752 52902752 G A ICK Silent p.N47N 0.30 TCGA-FW-A3R5-06 6 52962573 52962573 C T FBXO9 Missense_Mutation p.P430L 0.19 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 6 52993438 52993438 C T GCM1 Missense_Mutation p.D293N 0.11 tolerated(0.15) benign(0.003) TCGA-FW-A3R5-06 6 52999086 52999086 C T GCM1 Missense_Mutation p.D38N 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 53364951 53364951 G A GCLC Missense_Mutation p.P532S 0.14 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 6 53519041 53519041 C T KLHL31 Missense_Mutation p.G344R 0.25 tolerated(0.52) possibly_damaging(0.736) TCGA-FW-A3R5-06 6 53519078 53519078 G A KLHL31 Silent p.S331S 0.31 TCGA-FW-A3R5-06 6 53520004 53520004 C T KLHL31 Missense_Mutation p.E23K 0.31 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-FW-A3R5-06 6 53787691 53787691 C T LRRC1 3'UTR 0.27 TCGA-FW-A3R5-06 6 53883852 53883852 G A MLIP Missense_Mutation p.R9K 0.25 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 53989385 53989385 G A MLIP Missense_Mutation p.E112K 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 6 54185403 54185403 G A TINAG Missense_Mutation p.E128K 0.22 tolerated(0.4) benign(0.006) TCGA-FW-A3R5-06 6 54186144 54186144 C T TINAG Missense_Mutation p.R157C 0.25 tolerated(0.06) benign(0.01) TCGA-FW-A3R5-06 6 54219328 54219328 G A TINAG Missense_Mutation p.E382K 0.24 deleterious(0.03) benign(0.068) TCGA-FW-A3R5-06 6 54735313 54735313 G A FAM83B Missense_Mutation p.G90E 0.17 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 6 54792313 54792313 G A FAM83B Missense_Mutation p.R206Q 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 54804695 54804695 C T FAM83B Missense_Mutation p.S309L 0.20 tolerated(0.07) possibly_damaging(0.559) TCGA-FW-A3R5-06 6 54805108 54805108 C T FAM83B Missense_Mutation p.R447W 0.17 deleterious(0.03) benign(0.043) TCGA-FW-A3R5-06 6 54805618 54805618 C T FAM83B Missense_Mutation p.P617S 0.23 tolerated(0.65) benign(0.09) TCGA-FW-A3R5-06 6 54806039 54806039 C T FAM83B Missense_Mutation p.S757L 0.21 tolerated(0.12) benign(0.004) TCGA-FW-A3R5-06 6 55142266 55142266 C T HCRTR2 Missense_Mutation p.S284F 0.23 tolerated(0.14) benign(0.23) TCGA-FW-A3R5-06 6 55142285 55142285 G A HCRTR2 Silent p.A290A 0.25 TCGA-FW-A3R5-06 6 55196641 55196641 G A GFRAL Missense_Mutation p.D51N 0.28 deleterious(0.01) benign(0.14) TCGA-FW-A3R5-06 6 55198609 55198609 G A GFRAL Silent p.R61R 0.27 TCGA-FW-A3R5-06 6 55216155 55216155 G A GFRAL Missense_Mutation p.G159R 0.25 tolerated(0.16) possibly_damaging(0.737) TCGA-FW-A3R5-06 6 55216156 55216156 G A GFRAL Missense_Mutation p.G159E 0.25 tolerated(0.1) possibly_damaging(0.759) TCGA-FW-A3R5-06 6 55223733 55223733 G A GFRAL Missense_Mutation p.R250K 0.30 tolerated(1) benign(0.012) TCGA-FW-A3R5-06 6 55266593 55266593 C T GFRAL Missense_Mutation p.S376F 0.18 tolerated(0.56) benign(0.003) TCGA-FW-A3R5-06 6 55266750 55266750 C T GFRAL 3'UTR 0.38 TCGA-FW-A3R5-06 6 55381392 55381392 G A HMGCLL1 Missense_Mutation p.H133Y 0.20 deleterious(0.03) probably_damaging(0.966) TCGA-FW-A3R5-06 6 55406589 55406589 A T HMGCLL1 Missense_Mutation p.S109T 0.32 tolerated(0.08) probably_damaging(0.982) TCGA-FW-A3R5-06 6 55684615 55684615 C T BMP5 Missense_Mutation p.R174Q 0.26 tolerated(0.4) benign(0.153) TCGA-FW-A3R5-06 6 55739229 55739229 G A BMP5 Silent p.L145L 0.15 TCGA-FW-A3R5-06 6 55739263 55739263 G A BMP5 Missense_Mutation p.P134L 0.20 tolerated(0.53) benign(0.001) TCGA-FW-A3R5-06 6 55739306 55739306 G A BMP5 Missense_Mutation p.P120S 0.27 tolerated(0.09) benign(0.007) TCGA-FW-A3R5-06 6 55739539 55739539 C T BMP5 Missense_Mutation p.R42K 0.26 deleterious(0.04) possibly_damaging(0.768) TCGA-FW-A3R5-06 6 55739785 55739785 C T BMP5 5'UTR 0.33 TCGA-FW-A3R5-06 6 55924936 55924936 G A COL21A1 Missense_Mutation p.P830S 0.28 deleterious(0) benign(0.346) TCGA-FW-A3R5-06 6 55925701 55925701 C T COL21A1 Silent p.L780L 0.44 TCGA-FW-A3R5-06 6 55929392 55929392 C T COL21A1 Missense_Mutation p.G719E 0.24 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 6 55935584 55935584 C T COL21A1 Missense_Mutation p.E660K 0.23 tolerated(0.07) benign(0.439) TCGA-FW-A3R5-06 6 55939046 55939046 C T COL21A1 Missense_Mutation p.G650E 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 55939061 55939061 G A COL21A1 Missense_Mutation p.S645L 0.14 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 6 56035641 56035641 G A COL21A1 Missense_Mutation p.P278S 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 56044681 56044681 C T COL21A1 Missense_Mutation p.G112E 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 56044729 56044729 G A COL21A1 Missense_Mutation p.S96L 0.17 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 6 56380414 56380414 G A DST Missense_Mutation p.S3514L 0.12 possibly_damaging(0.69) TCGA-FW-A3R5-06 6 56417688 56417688 G A DST Missense_Mutation p.S2678L 0.15 possibly_damaging(0.475) TCGA-FW-A3R5-06 6 56471297 56471297 G A DST Intron 0.26 TCGA-FW-A3R5-06 6 56481389 56481389 G A DST Intron 0.30 TCGA-FW-A3R5-06 6 56857310 56857310 G A BEND6 Silent p.R85R 0.14 TCGA-FW-A3R5-06 6 56918271 56918271 C T KIAA1586 Missense_Mutation p.S325L 0.23 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 6 57013055 57013055 C T ZNF451 Silent p.C724C 0.22 TCGA-FW-A3R5-06 6 57013070 57013070 C T ZNF451 Silent p.I729I 0.18 TCGA-FW-A3R5-06 6 57013143 57013143 C T ZNF451 Missense_Mutation p.R754C 0.17 deleterious(0.03) benign(0.141) TCGA-FW-A3R5-06 6 57017042 57017042 C T ZNF451 Missense_Mutation p.P926S 0.32 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 57512524 57512524 G A PRIM2 3'UTR 0.10 TCGA-FW-A3R5-06 6 57512768 57512768 G A PRIM2 3'UTR 0.13 TCGA-FW-A3R5-06 6 6006945 6006945 A C NRN1 Missense_Mutation p.I13S 0.31 deleterious(0.01) benign(0.052) TCGA-FW-A3R5-06 6 6007007 6007007 G A NRN1 5'UTR 0.29 TCGA-FW-A3R5-06 6 6174838 6174838 G A F13A1 Silent p.F574F 0.28 TCGA-FW-A3R5-06 6 6174883 6174883 G A F13A1 Silent p.T559T 0.11 TCGA-FW-A3R5-06 6 6174985 6174985 C T F13A1 Silent p.V525V 0.36 TCGA-FW-A3R5-06 6 6175052 6175052 G A F13A1 Missense_Mutation p.A503V 0.23 tolerated(1) benign(0.014) TCGA-FW-A3R5-06 6 6222303 6222303 C T F13A1 Missense_Mutation p.G359R 0.28 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 6 62442615 62442615 C T KHDRBS2 Missense_Mutation p.D289N 0.24 deleterious(0) possibly_damaging(0.494) TCGA-FW-A3R5-06 6 6266847 6266847 C T F13A1 Missense_Mutation p.R172Q 0.32 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 6 6267018 6267018 C T F13A1 Missense_Mutation p.G115E 0.31 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 6 62687998 62687998 C T KHDRBS2 Silent p.L152L 0.22 TCGA-FW-A3R5-06 6 62757842 62757842 C T KHDRBS2 Missense_Mutation p.E93K 0.23 deleterious(0.01) probably_damaging(0.949) TCGA-FW-A3R5-06 6 62887153 62887153 G A KHDRBS2 Silent p.V52V 0.29 TCGA-FW-A3R5-06 6 629880 629880 G A EXOC2 Missense_Mutation p.P126L 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-FW-A3R5-06 6 6305701 6305701 C T F13A1 Missense_Mutation p.D68N 0.17 tolerated(0.16) possibly_damaging(0.704) TCGA-FW-A3R5-06 6 63989906 63989906 G A LGSN 3'UTR 0.22 TCGA-FW-A3R5-06 6 63990342 63990342 C T LGSN Missense_Mutation p.D372N 0.26 tolerated(0.51) benign(0.007) TCGA-FW-A3R5-06 6 63990484 63990484 C T LGSN Silent p.K324K 0.14 TCGA-FW-A3R5-06 6 64408417 64408417 T C PHF3 Silent p.S968S 0.35 TCGA-FW-A3R5-06 6 64421078 64421078 C T PHF3 Missense_Mutation p.R1273C 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 66044946 66044946 C T EYS Missense_Mutation p.E565K 0.35 tolerated(0.75) benign(0.08) TCGA-FW-A3R5-06 6 66112422 66112422 G A EYS Missense_Mutation p.P378L 0.12 tolerated(0.13) probably_damaging(0.958) TCGA-FW-A3R5-06 6 66204583 66204583 C T EYS Missense_Mutation p.E241K 0.38 tolerated(0.68) benign(0.201) TCGA-FW-A3R5-06 6 66204690 66204690 G A EYS Missense_Mutation p.P205L 0.25 tolerated(0.22) probably_damaging(0.98) TCGA-FW-A3R5-06 6 6649878 6649878 C T LY86 Missense_Mutation p.P125S 0.34 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 6 69640520 69640520 C T BAI3 Missense_Mutation p.P276L 0.13 tolerated(0.27) benign(0.001) TCGA-FW-A3R5-06 6 69665943 69665943 C T BAI3 Missense_Mutation p.S408L 0.28 tolerated(0.12) benign(0.058) TCGA-FW-A3R5-06 6 69684658 69684658 C T BAI3 Missense_Mutation p.P510L 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-FW-A3R5-06 6 69758135 69758135 G A BAI3 Missense_Mutation p.M722I 0.41 deleterious(0) possibly_damaging(0.82) TCGA-FW-A3R5-06 6 69949067 69949067 C T BAI3 Silent p.I921I 0.33 TCGA-FW-A3R5-06 6 70049347 70049347 C T BAI3 Missense_Mutation p.S1137L 0.36 deleterious(0.02) benign(0.016) TCGA-FW-A3R5-06 6 70064186 70064186 C T BAI3 Missense_Mutation p.S1174L 0.46 deleterious(0.04) benign(0.001) TCGA-FW-A3R5-06 6 70672746 70672746 G A COL19A1 Missense_Mutation p.G337E 0.26 deleterious(0) unknown(0) TCGA-FW-A3R5-06 6 70672748 70672748 G A COL19A1 Missense_Mutation p.E338K 0.27 tolerated(0.38) unknown(0) TCGA-FW-A3R5-06 6 70840074 70840074 G A COL19A1 Missense_Mutation p.G448R 0.29 tolerated(0.47) benign(0.307) TCGA-FW-A3R5-06 6 70942322 70942322 C T COL9A1 Missense_Mutation p.G823R 0.07 probably_damaging(1) TCGA-FW-A3R5-06 6 70951717 70951717 G A COL9A1 Missense_Mutation p.L650F 0.38 benign(0.41) TCGA-FW-A3R5-06 6 70961825 70961825 G A COL9A1 Missense_Mutation p.P624S 0.34 benign(0.114) TCGA-FW-A3R5-06 6 70964202 70964202 C T COL9A1 Missense_Mutation p.D566N 0.10 possibly_damaging(0.787) TCGA-FW-A3R5-06 6 70964210 70964210 G A COL9A1 Missense_Mutation p.P563L 0.10 benign(0.297) TCGA-FW-A3R5-06 6 70964677 70964677 G A COL9A1 Missense_Mutation p.P552S 0.27 probably_damaging(0.998) TCGA-FW-A3R5-06 6 70964887 70964887 C T COL9A1 Missense_Mutation p.G526E 0.37 probably_damaging(0.999) TCGA-FW-A3R5-06 6 70991123 70991123 G A COL9A1 Silent p.P282P 0.53 TCGA-FW-A3R5-06 6 71004250 71004250 C T COL9A1 Missense_Mutation p.G106R 0.37 unknown(0) TCGA-FW-A3R5-06 6 71012625 71012625 C T COL9A1 Translation_Start_Site p.M1? 0.37 unknown(0) TCGA-FW-A3R5-06 6 71012706 71012706 C T COL9A1 5'UTR 0.19 TCGA-FW-A3R5-06 6 71191790 71191790 C T FAM135A Silent p.F252F 0.32 TCGA-FW-A3R5-06 6 71269569 71269569 C T FAM135A Missense_Mutation p.S1498L 0.48 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 6 72006513 72006513 C T OGFRL1 Silent p.L229L 0.09 TCGA-FW-A3R5-06 6 7230365 7230365 A C RREB1 Missense_Mutation p.Y678S 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 7231040 7231040 C T RREB1 Missense_Mutation p.S903L 0.29 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 6 72596824 72596824 G A RIMS1 Missense_Mutation p.R33K 0.48 deleterious(0) probably_damaging(0.933) TCGA-FW-A3R5-06 6 72889564 72889564 G A RIMS1 Missense_Mutation p.G253E 0.34 tolerated(0.27) benign(0.151) TCGA-FW-A3R5-06 6 72889588 72889588 C T RIMS1 Missense_Mutation p.S261F 0.35 tolerated(0.05) benign(0.002) TCGA-FW-A3R5-06 6 72955525 72955525 C T RIMS1 Missense_Mutation p.P697S 0.32 tolerated(0.11) benign(0.241) TCGA-FW-A3R5-06 6 72960115 72960115 G A RIMS1 Missense_Mutation p.G775E 0.31 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 72975151 72975151 C T RIMS1 Missense_Mutation p.H1085Y 0.10 tolerated(1) benign(0.018) TCGA-FW-A3R5-06 6 73043362 73043362 A G RIMS1 Missense_Mutation p.K1397R 0.21 deleterious(0.02) benign(0.274) TCGA-FW-A3R5-06 6 7374329 7374329 C T CAGE1 Silent p.G241G 0.20 TCGA-FW-A3R5-06 6 73821098 73821098 G A KCNQ5 Missense_Mutation p.R366K 0.36 deleterious(0) possibly_damaging(0.885) TCGA-FW-A3R5-06 6 73879550 73879550 C T KCNQ5 Missense_Mutation p.P536L 0.12 deleterious(0.03) benign(0.158) TCGA-FW-A3R5-06 6 73904255 73904255 C T KCNQ5 Silent p.L658L 0.11 TCGA-FW-A3R5-06 6 73905021 73905021 G A KCNQ5 Missense_Mutation p.E914K 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.585) TCGA-FW-A3R5-06 6 73905028 73905028 C T KCNQ5 Missense_Mutation p.A916V 0.07 tolerated_low_confidence(0.35) benign(0.002) TCGA-FW-A3R5-06 6 73935101 73935101 C T KHDC1L Missense_Mutation p.E11K 0.14 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 6 74063623 74063623 C T DPPA5 Nonsense_Mutation p.W82* 0.17 TCGA-FW-A3R5-06 6 74073372 74073372 C T KHDC3L Missense_Mutation p.S148L 0.47 deleterious(0.03) benign(0.027) TCGA-FW-A3R5-06 6 74073386 74073386 G A KHDC3L Missense_Mutation p.E153K 0.44 tolerated(0.06) probably_damaging(0.94) TCGA-FW-A3R5-06 6 74079371 74079371 G A OOEP Missense_Mutation p.P49S 0.12 deleterious(0.01) possibly_damaging(0.906) TCGA-FW-A3R5-06 6 74104714 74104714 G A DDX43 Missense_Mutation p.R29K 0.12 tolerated_low_confidence(0.26) benign(0.057) TCGA-FW-A3R5-06 6 7563999 7563999 G A DSP Missense_Mutation p.E253K 0.25 benign(0.334) TCGA-FW-A3R5-06 6 7565753 7565753 C T DSP Silent p.S313S 0.23 TCGA-FW-A3R5-06 6 7569464 7569464 G A DSP Missense_Mutation p.E489K 0.29 possibly_damaging(0.737) TCGA-FW-A3R5-06 6 7569539 7569539 C T DSP Missense_Mutation p.P514S 0.20 probably_damaging(0.997) TCGA-FW-A3R5-06 6 7571684 7571684 C T DSP Silent p.F590F 0.10 TCGA-FW-A3R5-06 6 7571715 7571715 G A DSP Missense_Mutation p.G601R 0.12 probably_damaging(0.999) TCGA-FW-A3R5-06 6 7576563 7576563 G A DSP Silent p.R889R 0.31 TCGA-FW-A3R5-06 6 7580655 7580655 G A DSP Missense_Mutation p.R1411K 0.36 benign(0.004) TCGA-FW-A3R5-06 6 7580705 7580705 G A DSP Missense_Mutation p.E1428K 0.23 probably_damaging(0.987) TCGA-FW-A3R5-06 6 7581370 7581370 G A DSP Silent p.R1649R 0.32 TCGA-FW-A3R5-06 6 7581550 7581550 C T DSP Silent p.L1709L 0.12 TCGA-FW-A3R5-06 6 7582885 7582885 G A DSP Missense_Mutation p.R1797K 0.26 probably_damaging(0.977) TCGA-FW-A3R5-06 6 75829083 75829083 C T COL12A1 Missense_Mutation p.G2398E 0.11 probably_damaging(1) TCGA-FW-A3R5-06 6 75831063 75831063 G A COL12A1 Silent p.F2347F 0.13 TCGA-FW-A3R5-06 6 7584496 7584496 G A DSP Missense_Mutation p.R2334Q 0.26 benign(0.256) TCGA-FW-A3R5-06 6 7584536 7584536 C T DSP Silent p.I2347I 0.17 TCGA-FW-A3R5-06 6 7584837 7584837 G A DSP Missense_Mutation p.E2448K 0.29 benign(0.304) TCGA-FW-A3R5-06 6 7585343 7585343 G A DSP Silent p.S2616S 0.32 TCGA-FW-A3R5-06 6 7585536 7585536 G A DSP Missense_Mutation p.D2681N 0.28 probably_damaging(0.998) TCGA-FW-A3R5-06 6 75857507 75857507 C T COL12A1 Missense_Mutation p.R1434Q 0.12 probably_damaging(0.996) TCGA-FW-A3R5-06 6 75902057 75902057 C T COL12A1 Missense_Mutation p.E69K 0.13 probably_damaging(0.998) TCGA-FW-A3R5-06 6 75994289 75994289 G A TMEM30A Silent p.T22T 0.13 TCGA-FW-A3R5-06 6 76022865 76022865 C T FILIP1 Missense_Mutation p.G895R 0.08 tolerated(0.37) benign(0.005) TCGA-FW-A3R5-06 6 76023520 76023520 G A FILIP1 Silent p.F676F 0.35 TCGA-FW-A3R5-06 6 76024324 76024324 C T FILIP1 Silent p.R408R 0.08 TCGA-FW-A3R5-06 6 76024332 76024332 C T FILIP1 Missense_Mutation p.E406K 0.08 deleterious(0.01) benign(0.419) TCGA-FW-A3R5-06 6 76024398 76024398 G A FILIP1 Nonsense_Mutation p.R384* 0.08 TCGA-FW-A3R5-06 6 76024624 76024624 C T FILIP1 Silent p.S308S 0.40 TCGA-FW-A3R5-06 6 76024773 76024773 C T FILIP1 Missense_Mutation p.E259K 0.35 deleterious(0.01) probably_damaging(0.929) TCGA-FW-A3R5-06 6 76063292 76063292 C T FILIP1 Missense_Mutation p.D198N 0.07 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 6 76386875 76386875 C T SENP6 Missense_Mutation p.P584L 0.17 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 6 76712680 76712680 C T IMPG1 Missense_Mutation p.E416K 0.09 tolerated(0.52) benign(0.231) TCGA-FW-A3R5-06 6 76712688 76712688 G A IMPG1 Missense_Mutation p.P413L 0.23 tolerated(0.29) benign(0.005) TCGA-FW-A3R5-06 6 76728481 76728481 G A IMPG1 Missense_Mutation p.S254F 0.10 deleterious(0) possibly_damaging(0.851) TCGA-FW-A3R5-06 6 76744366 76744366 G A IMPG1 Missense_Mutation p.S147F 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 6 76744460 76744460 G A IMPG1 Missense_Mutation p.R116C 0.17 deleterious(0) probably_damaging(0.921) TCGA-FW-A3R5-06 6 7727852 7727852 G A BMP6 Missense_Mutation p.V222M 0.20 deleterious(0) possibly_damaging(0.869) TCGA-FW-A3R5-06 6 7845399 7845399 C T BMP6 Missense_Mutation p.R231C 0.22 deleterious(0.05) probably_damaging(0.912) TCGA-FW-A3R5-06 6 7862555 7862555 C T BMP6 Missense_Mutation p.A343V 0.29 tolerated(0.29) benign(0.438) TCGA-FW-A3R5-06 6 79725486 79725486 C T PHIP Missense_Mutation p.G417E 0.39 tolerated(0.82) benign(0.432) TCGA-FW-A3R5-06 6 80203349 80203349 C T LCA5 Missense_Mutation p.R280Q 0.40 tolerated(0.83) benign(0.025) TCGA-FW-A3R5-06 6 80223044 80223044 G A LCA5 Missense_Mutation p.S202F 0.49 deleterious(0.02) benign(0.033) TCGA-FW-A3R5-06 6 80634670 80634670 C T ELOVL4 Missense_Mutation p.R123K 0.32 tolerated(0.07) possibly_damaging(0.474) TCGA-FW-A3R5-06 6 83728787 83728787 G A UBE3D Silent p.F305F 0.43 TCGA-FW-A3R5-06 6 83818732 83818732 C T DOPEY1 Missense_Mutation p.P142S 0.37 deleterious(0) possibly_damaging(0.878) TCGA-FW-A3R5-06 6 84025043 84025043 C T ME1 Silent p.E230E 0.32 TCGA-FW-A3R5-06 6 8422706 8422706 G A SLC35B3 Nonsense_Mutation p.Q191* 0.18 TCGA-FW-A3R5-06 6 84233940 84233940 G A PRSS35 Silent p.P260P 0.12 TCGA-FW-A3R5-06 6 84270636 84270636 G A SNAP91 Missense_Mutation p.P825S 0.54 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A3R5-06 6 84366585 84366585 C T SNAP91 Splice_Site p.X183_splice 0.36 TCGA-FW-A3R5-06 6 84567100 84567100 G A RIPPLY2 Missense_Mutation p.E127K 0.34 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-FW-A3R5-06 6 85446507 85446507 C T TBX18 Missense_Mutation p.G574R 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.823) TCGA-FW-A3R5-06 6 86181095 86181095 G A NT5E Missense_Mutation p.G235S 0.36 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 6 86252923 86252923 G A SNX14 Missense_Mutation p.P456S 0.16 tolerated(0.07) possibly_damaging(0.461) TCGA-FW-A3R5-06 6 86277262 86277262 G A SNX14 Missense_Mutation p.P151S 0.26 tolerated(0.19) possibly_damaging(0.74) TCGA-FW-A3R5-06 6 87725215 87725215 C T HTR1E Nonsense_Mutation p.Q55* 0.36 TCGA-FW-A3R5-06 6 87726181 87726181 C T HTR1E 3'UTR 0.47 TCGA-FW-A3R5-06 6 87795421 87795421 A G CGA 3'UTR 0.50 TCGA-FW-A3R5-06 6 87796037 87796037 C T CGA Silent p.K68K 0.26 TCGA-FW-A3R5-06 6 87965964 87965964 C T ZNF292 Missense_Mutation p.P873S 0.10 tolerated_low_confidence(0.06) benign(0.006) TCGA-FW-A3R5-06 6 87966917 87966917 C T ZNF292 Silent p.P1190P 0.11 TCGA-FW-A3R5-06 6 87967765 87967765 C T ZNF292 Missense_Mutation p.S1473F 0.17 deleterious(0.01) benign(0.206) TCGA-FW-A3R5-06 6 87969864 87969864 C T ZNF292 Nonsense_Mutation p.R2173* 0.36 TCGA-FW-A3R5-06 6 87970614 87970614 C G ZNF292 Missense_Mutation p.L2423V 0.37 tolerated(0.41) possibly_damaging(0.608) TCGA-FW-A3R5-06 6 88046769 88046769 C T SMIM8 Missense_Mutation p.P7L 0.20 deleterious(0) benign(0.093) TCGA-FW-A3R5-06 6 88119601 88119601 G A C6ORF165 Missense_Mutation p.R15Q 0.08 tolerated(0.09) possibly_damaging(0.81) TCGA-FW-A3R5-06 6 88173915 88173915 G A C6ORF165 Missense_Mutation p.E606K 0.36 tolerated(1) benign(0) TCGA-FW-A3R5-06 6 88757792 88757792 G A SPACA1 Missense_Mutation p.E57K 0.77 tolerated_low_confidence(0.18) benign(0.23) TCGA-FW-A3R5-06 6 88769219 88769219 G A SPACA1 Missense_Mutation p.E175K 0.16 deleterious(0.01) possibly_damaging(0.477) TCGA-FW-A3R5-06 6 88853872 88853872 G A CNR1 Silent p.L374L 0.37 TCGA-FW-A3R5-06 6 88853988 88853988 G A CNR1 Missense_Mutation p.R336C 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 6 88853989 88853989 G A CNR1 Silent p.A335A 0.39 TCGA-FW-A3R5-06 6 88854251 88854251 G A CNR1 Missense_Mutation p.A248V 0.12 deleterious(0.01) possibly_damaging(0.886) TCGA-FW-A3R5-06 6 89888625 89888625 G A GABRR1 Missense_Mutation p.S435F 0.39 tolerated(0.07) possibly_damaging(0.797) TCGA-FW-A3R5-06 6 89975401 89975401 G A GABRR2 Silent p.L274L 0.46 TCGA-FW-A3R5-06 6 90326361 90326361 G A ANKRD6 Silent p.T233T 0.38 TCGA-FW-A3R5-06 6 90340157 90340157 G A ANKRD6 Missense_Mutation p.D540N 0.33 tolerated(0.08) possibly_damaging(0.69) TCGA-FW-A3R5-06 6 90433300 90433300 G A MDN1 Silent p.F1903F 0.27 TCGA-FW-A3R5-06 6 90455056 90455056 G A MDN1 Missense_Mutation p.L1372F 0.40 probably_damaging(0.966) TCGA-FW-A3R5-06 6 90504325 90504325 G A MDN1 Silent p.L175L 0.28 TCGA-FW-A3R5-06 6 90604284 90604284 C T GJA10 Nonsense_Mutation p.R33* 0.47 TCGA-FW-A3R5-06 6 93964487 93964487 C T EPHA7 Missense_Mutation p.A804T 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 93979219 93979219 C T EPHA7 Missense_Mutation p.E537K 0.36 tolerated(0.09) possibly_damaging(0.499) TCGA-FW-A3R5-06 6 93982115 93982115 C T EPHA7 Missense_Mutation p.M450I 0.50 tolerated(0.07) benign(0.001) TCGA-FW-A3R5-06 6 94068088 94068088 G A EPHA7 Nonsense_Mutation p.Q292* 0.17 TCGA-FW-A3R5-06 6 94120430 94120430 G A EPHA7 Silent p.S207S 0.08 TCGA-FW-A3R5-06 6 94120730 94120730 C T EPHA7 Silent p.R107R 0.34 TCGA-FW-A3R5-06 6 94120845 94120845 C T EPHA7 Missense_Mutation p.R69Q 0.38 deleterious(0.05) probably_damaging(0.986) TCGA-FW-A3R5-06 6 96034781 96034781 C T MANEA Missense_Mutation p.P156S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 6 96053623 96053623 G A MANEA Splice_Site p.X244_splice 0.20 TCGA-FW-A3R5-06 6 96053752 96053752 C T MANEA Missense_Mutation p.S287F 0.35 deleterious(0.03) possibly_damaging(0.724) TCGA-FW-A3R5-06 6 96054338 96054338 C T MANEA 3'UTR 0.28 TCGA-FW-A3R5-06 6 96651377 96651377 G A FUT9 Missense_Mutation p.D116N 0.35 tolerated(0.09) possibly_damaging(0.649) TCGA-FW-A3R5-06 6 96652157 96652157 C T FUT9 3'UTR 0.17 TCGA-FW-A3R5-06 6 97058463 97058463 G A FHL5 Missense_Mutation p.G174R 0.37 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 6 97063674 97063674 C T FHL5 3'UTR 0.56 TCGA-FW-A3R5-06 6 9900697 9900697 C T OFCC1 Intron 0.29 TCGA-FW-A3R5-06 6 9903643 9903643 C T OFCC1 Intron 0.26 TCGA-FW-A3R5-06 6 9933535 9933535 G A OFCC1 Nonsense_Mutation p.Q7* 0.21 TCGA-FW-A3R5-06 6 99797051 99797051 G A FAXC Silent p.T66T 0.35 TCGA-FW-A3R5-06 6 99819417 99819417 G A COQ3 Missense_Mutation p.S259F 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-FW-A3R5-06 6 99851719 99851719 G A PNISR Missense_Mutation p.S381F 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 6 99885165 99885165 G A USP45 Silent p.S757S 0.22 TCGA-FW-A3R5-06 7 100086302 100086302 C T NYAP1 Missense_Mutation p.P320S 0.31 tolerated(0.75) benign(0.003) TCGA-FW-A3R5-06 7 100086479 100086479 G A NYAP1 Missense_Mutation p.E379K 0.32 deleterious(0.05) benign(0.218) TCGA-FW-A3R5-06 7 100086625 100086625 C T NYAP1 Silent p.S427S 0.46 TCGA-FW-A3R5-06 7 100086691 100086691 C T NYAP1 Silent p.L449L 0.33 TCGA-FW-A3R5-06 7 100086942 100086942 C T NYAP1 Missense_Mutation p.S533F 0.50 deleterious(0) possibly_damaging(0.495) TCGA-FW-A3R5-06 7 100087130 100087130 G A NYAP1 Missense_Mutation p.D596N 0.34 deleterious(0.04) benign(0.006) TCGA-FW-A3R5-06 7 100162639 100162639 C T AGFG2 3'UTR 0.33 TCGA-FW-A3R5-06 7 100162682 100162682 C T AGFG2 3'UTR 0.28 TCGA-FW-A3R5-06 7 100176357 100176357 G A LRCH4 Silent p.S217S 0.09 TCGA-FW-A3R5-06 7 100179450 100179450 G A LRCH4 Missense_Mutation p.S183F 0.20 tolerated(0.18) possibly_damaging(0.882) TCGA-FW-A3R5-06 7 100184199 100184199 G A FBXO24 5'Flank 0.21 TCGA-FW-A3R5-06 7 100189522 100189522 G A FBXO24 Silent p.K223K 0.22 TCGA-FW-A3R5-06 7 100190594 100190594 C T FBXO24 Silent p.I287I 0.13 TCGA-FW-A3R5-06 7 100210593 100210593 C T MOSPD3 Missense_Mutation p.P60L 0.17 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 7 100244607 100244607 G A ACTL6B Missense_Mutation p.P308L 0.10 tolerated(0.14) possibly_damaging(0.479) TCGA-FW-A3R5-06 7 100320391 100320391 C A EPO Silent p.P117P 0.33 TCGA-FW-A3R5-06 7 100334587 100334587 C T ZAN Missense_Mutation p.L137F 0.29 probably_damaging(0.961) TCGA-FW-A3R5-06 7 100349594 100349594 C T ZAN Silent p.P622P 0.32 TCGA-FW-A3R5-06 7 100349739 100349739 T A ZAN Missense_Mutation p.S671T 0.26 benign(0.422) TCGA-FW-A3R5-06 7 100349741 100349741 C T ZAN Silent p.S671S 0.26 TCGA-FW-A3R5-06 7 100349971 100349971 C T ZAN Missense_Mutation p.P748L 0.30 possibly_damaging(0.851) TCGA-FW-A3R5-06 7 100350329 100350329 C T ZAN Silent p.S867S 0.25 TCGA-FW-A3R5-06 7 100357432 100357432 G A ZAN Silent p.E1220E 0.36 TCGA-FW-A3R5-06 7 100361804 100361804 G A ZAN Missense_Mutation p.E1418K 0.24 unknown(0) TCGA-FW-A3R5-06 7 100373312 100373312 C T ZAN Missense_Mutation p.L2016F 0.21 unknown(0) TCGA-FW-A3R5-06 7 100385647 100385647 C T ZAN Silent p.L2371L 0.26 TCGA-FW-A3R5-06 7 100386959 100386959 G A ZAN Silent p.R2448R 0.33 TCGA-FW-A3R5-06 7 100395072 100395072 G A ZAN Missense_Mutation p.R2692K 0.24 unknown(0) TCGA-FW-A3R5-06 7 100402849 100402849 C T EPHB4 Missense_Mutation p.E925K 0.19 tolerated(1) possibly_damaging(0.891) TCGA-FW-A3R5-06 7 100454649 100454649 C T SLC12A9 Missense_Mutation p.S203F 0.27 deleterious(0.04) possibly_damaging(0.866) TCGA-FW-A3R5-06 7 100458845 100458845 C T SLC12A9 Missense_Mutation p.S435F 0.25 deleterious(0) possibly_damaging(0.871) TCGA-FW-A3R5-06 7 100488880 100488880 C T ACHE Missense_Mutation p.D545N 0.34 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 7 100491646 100491646 C T ACHE Missense_Mutation p.E70K 0.23 tolerated(0.45) probably_damaging(0.995) TCGA-FW-A3R5-06 7 100491647 100491647 C T ACHE Silent p.A69A 0.20 TCGA-FW-A3R5-06 7 100549576 100549576 C T MUC3A Silent p.L53L 0.16 TCGA-FW-A3R5-06 7 100551777 100551777 C T MUC3A Silent p.I176I 0.06 TCGA-FW-A3R5-06 7 100608726 100608726 C T MUC3A Intron 0.15 TCGA-FW-A3R5-06 7 100675256 100675256 C T MUC17 Missense_Mutation p.P187S 0.17 benign(0.255) TCGA-FW-A3R5-06 7 100677281 100677281 G A MUC17 Missense_Mutation p.E862K 0.27 unknown(0) TCGA-FW-A3R5-06 7 100677717 100677717 C T MUC17 Missense_Mutation p.P1007L 0.26 probably_damaging(0.991) TCGA-FW-A3R5-06 7 100678234 100678234 C T MUC17 Silent p.T1179T 0.18 TCGA-FW-A3R5-06 7 100678659 100678659 C T MUC17 Missense_Mutation p.P1321L 0.20 unknown(0) TCGA-FW-A3R5-06 7 100679051 100679051 G A MUC17 Missense_Mutation p.E1452K 0.18 unknown(0) TCGA-FW-A3R5-06 7 100679638 100679638 G A MUC17 Silent p.E1647E 0.19 TCGA-FW-A3R5-06 7 100679639 100679639 G A MUC17 Missense_Mutation p.A1648T 0.19 probably_damaging(0.991) TCGA-FW-A3R5-06 7 100679883 100679883 C T MUC17 Missense_Mutation p.S1729L 0.26 probably_damaging(0.972) TCGA-FW-A3R5-06 7 100680532 100680532 C T MUC17 Silent p.T1945T 0.28 TCGA-FW-A3R5-06 7 100680818 100680818 G A MUC17 Missense_Mutation p.E2041K 0.26 unknown(0) TCGA-FW-A3R5-06 7 100681119 100681119 C T MUC17 Missense_Mutation p.S2141L 0.23 unknown(0) TCGA-FW-A3R5-06 7 100681286 100681286 G A MUC17 Missense_Mutation p.E2197K 0.29 unknown(0) TCGA-FW-A3R5-06 7 100681346 100681346 G A MUC17 Missense_Mutation p.E2217K 0.30 unknown(0) TCGA-FW-A3R5-06 7 100683361 100683361 C T MUC17 Silent p.T2888T 0.25 TCGA-FW-A3R5-06 7 100684479 100684479 C T MUC17 Missense_Mutation p.S3261L 0.31 probably_damaging(0.942) TCGA-FW-A3R5-06 7 100684591 100684591 G A MUC17 Silent p.T3298T 0.33 TCGA-FW-A3R5-06 7 100685369 100685369 C T MUC17 Missense_Mutation p.P3558S 0.10 possibly_damaging(0.857) TCGA-FW-A3R5-06 7 100685370 100685370 C T MUC17 Missense_Mutation p.P3558L 0.10 possibly_damaging(0.908) TCGA-FW-A3R5-06 7 100685641 100685641 C T MUC17 Silent p.T3648T 0.28 TCGA-FW-A3R5-06 7 100686297 100686297 C T MUC17 Missense_Mutation p.S3867L 0.35 benign(0.307) TCGA-FW-A3R5-06 7 100686794 100686794 A T MUC17 Missense_Mutation p.T4033S 0.25 benign(0.003) TCGA-FW-A3R5-06 7 100686795 100686795 C T MUC17 Missense_Mutation p.T4033I 0.24 benign(0.134) TCGA-FW-A3R5-06 7 100730827 100730827 C T TRIM56 Silent p.F78F 0.37 TCGA-FW-A3R5-06 7 100777118 100777118 C T SERPINE1 Silent p.L281L 0.26 TCGA-FW-A3R5-06 7 100815307 100815307 G A NAT16 3'UTR 0.60 TCGA-FW-A3R5-06 7 100815389 100815389 C T NAT16 Missense_Mutation p.E361K 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 7 100817986 100817986 C T NAT16 Missense_Mutation p.E35K 0.26 tolerated(0.52) benign(0.015) TCGA-FW-A3R5-06 7 100839271 100839271 C T MOGAT3 Missense_Mutation p.E328K 0.34 tolerated(0.27) benign(0.055) TCGA-FW-A3R5-06 7 100888359 100888359 G A FIS1 5'UTR 0.34 TCGA-FW-A3R5-06 7 101183219 101183219 G A COL26A1 Missense_Mutation p.D165N 0.21 tolerated(0.29) benign(0.085) TCGA-FW-A3R5-06 7 101188637 101188637 G A COL26A1 Missense_Mutation p.G241E 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 101256771 101256771 C T MYL10 Missense_Mutation p.G222D 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 101256829 101256829 G A MYL10 Missense_Mutation p.P203S 0.24 tolerated(0.06) probably_damaging(0.973) TCGA-FW-A3R5-06 7 101265448 101265448 C T MYL10 Missense_Mutation p.A128T 0.17 tolerated(0.06) possibly_damaging(0.577) TCGA-FW-A3R5-06 7 101671417 101671417 C T CUX1 Nonsense_Mutation p.Q72* 0.09 TCGA-FW-A3R5-06 7 101839977 101839977 C T CUX1 Missense_Mutation p.P440L 0.28 tolerated(0.64) unknown(0) TCGA-FW-A3R5-06 7 101844953 101844953 C T CUX1 Silent p.P803P 0.34 TCGA-FW-A3R5-06 7 101892274 101892274 C T CUX1 Silent p.R1501R 0.24 TCGA-FW-A3R5-06 7 101918575 101918575 C T CUX1 Missense_Mutation p.S501F 0.30 deleterious(0.02) possibly_damaging(0.8) TCGA-FW-A3R5-06 7 101957774 101957774 C T SH2B2 Missense_Mutation p.P473L 0.35 tolerated(0.35) possibly_damaging(0.476) TCGA-FW-A3R5-06 7 102097929 102097929 G A ALKBH4 Missense_Mutation p.S274L 0.27 deleterious(0) probably_damaging(0.916) TCGA-FW-A3R5-06 7 102147209 102147209 G A RASA4B Missense_Mutation p.H121Y 0.21 tolerated(0.2) probably_damaging(0.997) TCGA-FW-A3R5-06 7 102246372 102246372 G A RASA4 Missense_Mutation p.H121Y 0.33 tolerated(0.18) probably_damaging(0.994) TCGA-FW-A3R5-06 7 102574332 102574332 G A LRRC17 5'UTR 0.22 TCGA-FW-A3R5-06 7 102665589 102665589 C T FBXL13 Missense_Mutation p.R139Q 0.15 tolerated(0.95) benign(0) TCGA-FW-A3R5-06 7 102993266 102993266 C T PSMC2 Intron 0.18 TCGA-FW-A3R5-06 7 103029809 103029809 G A SLC26A5 Silent p.L458L 0.26 TCGA-FW-A3R5-06 7 103032170 103032170 G A SLC26A5 Silent p.L378L 0.16 TCGA-FW-A3R5-06 7 103032171 103032171 G A SLC26A5 Silent p.A377A 0.18 TCGA-FW-A3R5-06 7 103051925 103051925 C T SLC26A5 Missense_Mutation p.R171K 0.24 deleterious(0.02) probably_damaging(0.977) TCGA-FW-A3R5-06 7 103061833 103061833 C T SLC26A5 Silent p.A43A 0.16 TCGA-FW-A3R5-06 7 103126831 103126831 G A RELN Missense_Mutation p.P3266S 0.29 deleterious(0.03) benign(0.359) TCGA-FW-A3R5-06 7 103137058 103137058 C T RELN Silent p.V3036V 0.22 TCGA-FW-A3R5-06 7 103143606 103143606 G A RELN Silent p.F2782F 0.32 TCGA-FW-A3R5-06 7 103143635 103143635 G A RELN Nonsense_Mutation p.Q2773* 0.08 TCGA-FW-A3R5-06 7 103155868 103155868 G A RELN Missense_Mutation p.P2628L 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 103180703 103180703 G A RELN Missense_Mutation p.L2291F 0.25 tolerated(0.33) possibly_damaging(0.732) TCGA-FW-A3R5-06 7 103191703 103191703 G A RELN Missense_Mutation p.P2038L 0.25 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 103202396 103202396 G A RELN Missense_Mutation p.P1739S 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-FW-A3R5-06 7 103230142 103230142 C T RELN Missense_Mutation p.G1349E 0.26 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 7 103294550 103294550 G A RELN Missense_Mutation p.S515F 0.27 deleterious(0.01) possibly_damaging(0.506) TCGA-FW-A3R5-06 7 103294589 103294589 C T RELN Missense_Mutation p.G502E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 7 103557528 103557528 C T RELN Missense_Mutation p.G111R 0.27 deleterious(0.01) possibly_damaging(0.754) TCGA-FW-A3R5-06 7 103629630 103629630 G A RELN Silent p.S58S 0.19 TCGA-FW-A3R5-06 7 104377342 104377342 G A LHFPL3 Silent p.L222L 0.32 TCGA-FW-A3R5-06 7 104703895 104703895 C T KMT2E Missense_Mutation p.P95L 0.26 deleterious(0.01) possibly_damaging(0.713) TCGA-FW-A3R5-06 7 105105785 105105785 G A PUS7 Silent p.F534F 0.26 TCGA-FW-A3R5-06 7 105190518 105190518 C T RINT1 Missense_Mutation p.A338V 0.26 deleterious(0) benign(0.099) TCGA-FW-A3R5-06 7 105645016 105645016 C T CDHR3 Missense_Mutation p.S312F 0.23 deleterious(0) possibly_damaging(0.89) TCGA-FW-A3R5-06 7 106507997 106507997 C T PIK3CG Intron 0.19 TCGA-FW-A3R5-06 7 106508298 106508298 C T PIK3CG Silent p.L98L 0.23 TCGA-FW-A3R5-06 7 106509747 106509747 G A PIK3CG Missense_Mutation p.E581K 0.35 deleterious(0.03) probably_damaging(0.915) TCGA-FW-A3R5-06 7 106526580 106526580 G A PIK3CG Missense_Mutation p.G958E 0.23 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 7 106526727 106526727 A G PIK3CG Missense_Mutation p.Q1007R 0.32 deleterious(0.03) benign(0.092) TCGA-FW-A3R5-06 7 106710741 106710741 G A PRKAR2B Missense_Mutation p.R108Q 0.25 deleterious(0.03) benign(0.058) TCGA-FW-A3R5-06 7 107115332 107115332 G A GPR22 Missense_Mutation p.G276D 0.27 tolerated(0.46) possibly_damaging(0.742) TCGA-FW-A3R5-06 7 107115577 107115577 G A GPR22 Missense_Mutation p.G358R 0.30 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 7 107262448 107262448 C T BCAP29 3'UTR 0.12 TCGA-FW-A3R5-06 7 107314668 107314668 G A SLC26A4 Missense_Mutation p.E159K 0.27 tolerated(0.08) benign(0.015) TCGA-FW-A3R5-06 7 107330682 107330682 G A SLC26A4 Silent p.Q421Q 0.31 TCGA-FW-A3R5-06 7 107408046 107408046 C T SLC26A3 Missense_Mutation p.G750E 0.34 tolerated(0.25) benign(0.014) TCGA-FW-A3R5-06 7 107416969 107416969 C T SLC26A3 Silent p.V535V 0.22 TCGA-FW-A3R5-06 7 107423438 107423438 C T SLC26A3 Missense_Mutation p.G407E 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 7 107430033 107430033 G A SLC26A3 Missense_Mutation p.S224F 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 107430068 107430068 G A SLC26A3 Silent p.G212G 0.15 TCGA-FW-A3R5-06 7 107601054 107601054 G A LAMB1 Missense_Mutation p.T717I 0.22 tolerated(0.56) benign(0.236) TCGA-FW-A3R5-06 7 107642209 107642209 G A LAMB1 Intron 0.14 TCGA-FW-A3R5-06 7 107674717 107674717 C T LAMB4 Missense_Mutation p.R1585Q 0.30 tolerated(0.95) benign(0.002) TCGA-FW-A3R5-06 7 107677897 107677897 C T LAMB4 Missense_Mutation p.E1539K 0.23 tolerated(0.92) benign(0.004) TCGA-FW-A3R5-06 7 107684286 107684286 C T LAMB4 Missense_Mutation p.R1461K 0.24 tolerated(0.86) benign(0.005) TCGA-FW-A3R5-06 7 107692680 107692680 C T LAMB4 Missense_Mutation p.E1260K 0.13 tolerated(0.55) benign(0.004) TCGA-FW-A3R5-06 7 107703405 107703405 C T LAMB4 Missense_Mutation p.M1032I 0.31 deleterious(0.04) benign(0.001) TCGA-FW-A3R5-06 7 107710318 107710318 G A LAMB4 Missense_Mutation p.P713S 0.29 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 7 107732116 107732116 G A LAMB4 Silent p.L552L 0.26 TCGA-FW-A3R5-06 7 107732807 107732807 C T LAMB4 Missense_Mutation p.D509N 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 7 107743504 107743504 G A LAMB4 Missense_Mutation p.P389S 0.26 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 7 107748257 107748257 C T LAMB4 Missense_Mutation p.R137Q 0.33 deleterious(0.04) benign(0.43) TCGA-FW-A3R5-06 7 108119732 108119732 G A PNPLA8 Missense_Mutation p.S657F 0.25 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 7 108138000 108138000 G A PNPLA8 Silent p.T460T 0.34 TCGA-FW-A3R5-06 7 108524513 108524513 C T C7orf66 Missense_Mutation p.S26N 0.11 deleterious_low_confidence(0.05) benign(0.016) TCGA-FW-A3R5-06 7 11068332 11068332 C T PHF14 Missense_Mutation p.R448C 0.35 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 7 110763690 110763690 G A LRRN3 Missense_Mutation p.E288K 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 110764073 110764073 G A LRRN3 Missense_Mutation p.M415I 0.22 tolerated(0.07) benign(0.063) TCGA-FW-A3R5-06 7 110764629 110764629 A G LRRN3 Missense_Mutation p.K601E 0.08 tolerated(0.28) benign(0.002) TCGA-FW-A3R5-06 7 111430622 111430622 G A DOCK4 Missense_Mutation p.P1069L 0.10 deleterious(0.03) possibly_damaging(0.839) TCGA-FW-A3R5-06 7 111540568 111540568 C T DOCK4 Missense_Mutation p.E448K 0.31 tolerated(0.06) probably_damaging(0.983) TCGA-FW-A3R5-06 7 111584888 111584888 G A DOCK4 Silent p.I274I 0.22 TCGA-FW-A3R5-06 7 112723552 112723552 C T GPR85 3'UTR 0.12 TCGA-FW-A3R5-06 7 113518403 113518403 G A PPP1R3A Missense_Mutation p.P915L 0.24 tolerated(0.72) benign(0.001) TCGA-FW-A3R5-06 7 113518778 113518778 C T PPP1R3A Missense_Mutation p.R790Q 0.23 tolerated(0.35) benign(0.109) TCGA-FW-A3R5-06 7 113519127 113519127 C T PPP1R3A Missense_Mutation p.E674K 0.17 tolerated(0.13) benign(0.037) TCGA-FW-A3R5-06 7 113519159 113519159 C T PPP1R3A Missense_Mutation p.G663E 0.27 tolerated(0.65) benign(0.006) TCGA-FW-A3R5-06 7 113519328 113519328 C T PPP1R3A Missense_Mutation p.G607S 0.25 tolerated(0.08) benign(0.11) TCGA-FW-A3R5-06 7 113519592 113519592 C T PPP1R3A Missense_Mutation p.E519K 0.20 tolerated(0.19) benign(0.01) TCGA-FW-A3R5-06 7 113519613 113519613 C T PPP1R3A Missense_Mutation p.G512S 0.20 tolerated(0.41) benign(0.017) TCGA-FW-A3R5-06 7 113519690 113519690 C T PPP1R3A Missense_Mutation p.R486Q 0.16 deleterious(0.01) benign(0.325) TCGA-FW-A3R5-06 7 113519973 113519973 C T PPP1R3A Missense_Mutation p.E392K 0.30 tolerated(0.54) benign(0.006) TCGA-FW-A3R5-06 7 113520119 113520119 G A PPP1R3A Missense_Mutation p.S343L 0.25 deleterious(0) benign(0.293) TCGA-FW-A3R5-06 7 114268724 114268724 C T FOXP2 Silent p.L155L 0.32 TCGA-FW-A3R5-06 7 114292282 114292282 G A FOXP2 Silent p.L398L 0.15 TCGA-FW-A3R5-06 7 114293996 114293996 G A FOXP2 Missense_Mutation p.E425K 0.28 deleterious(0) unknown(0) TCGA-FW-A3R5-06 7 11450874 11450874 C T THSD7A Missense_Mutation p.R1253Q 0.30 tolerated(0.06) probably_damaging(0.949) TCGA-FW-A3R5-06 7 11468641 11468641 G A THSD7A Missense_Mutation p.S1059F 0.25 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 7 115590997 115590997 C T TFEC Missense_Mutation p.R149K 0.24 deleterious(0) probably_damaging(0.974) TCGA-FW-A3R5-06 7 115614311 115614311 C T TFEC Splice_Site p.X61_splice 0.27 TCGA-FW-A3R5-06 7 115890401 115890401 G A TES Missense_Mutation p.E185K 0.33 tolerated(0.18) probably_damaging(1) TCGA-FW-A3R5-06 7 11630225 11630225 G A THSD7A Missense_Mutation p.P439S 0.15 tolerated(0.36) possibly_damaging(0.824) TCGA-FW-A3R5-06 7 11632983 11632983 C T THSD7A Missense_Mutation p.R390Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 7 116339546 116339546 C T MET Silent p.V136V 0.09 TCGA-FW-A3R5-06 7 116550294 116550294 C T CAPZA2 Missense_Mutation p.R172C 0.32 tolerated(0.09) probably_damaging(0.931) TCGA-FW-A3R5-06 7 11676363 11676363 C T THSD7A Missense_Mutation p.S139N 0.27 tolerated(0.31) benign(0.002) TCGA-FW-A3R5-06 7 116862069 116862069 C T ST7 Missense_Mutation p.L531F 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-FW-A3R5-06 7 116918161 116918161 C T WNT2 3'UTR 0.28 TCGA-FW-A3R5-06 7 116955341 116955341 G A WNT2 Silent p.T124T 0.16 TCGA-FW-A3R5-06 7 116960640 116960640 A T WNT2 Missense_Mutation p.F97L 0.21 deleterious(0.04) benign(0.011) TCGA-FW-A3R5-06 7 116960807 116960807 C T WNT2 Missense_Mutation p.D42N 0.12 tolerated(0.16) benign(0.043) TCGA-FW-A3R5-06 7 117021086 117021086 C T ASZ1 Missense_Mutation p.M308I 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-FW-A3R5-06 7 117067554 117067554 C T ASZ1 5'UTR 0.20 TCGA-FW-A3R5-06 7 117171115 117171115 C T CFTR Missense_Mutation p.H146Y 0.12 deleterious(0.03) benign(0.002) TCGA-FW-A3R5-06 7 117232120 117232120 C T CFTR Silent p.L633L 0.30 TCGA-FW-A3R5-06 7 117232171 117232171 C T CFTR Silent p.F650F 0.13 TCGA-FW-A3R5-06 7 117235007 117235007 G A CFTR Silent p.E838E 0.16 TCGA-FW-A3R5-06 7 117250683 117250683 C T CFTR Silent p.F1033F 0.08 TCGA-FW-A3R5-06 7 117251691 117251691 C T CFTR Missense_Mutation p.R1066C 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 117292939 117292939 C T CFTR Missense_Mutation p.P1306L 0.08 deleterious(0) possibly_damaging(0.901) TCGA-FW-A3R5-06 7 117307098 117307098 C T CFTR Missense_Mutation p.S1460F 0.20 deleterious_low_confidence(0.03) benign(0.142) TCGA-FW-A3R5-06 7 117874902 117874902 G A ANKRD7 Missense_Mutation p.E148K 0.18 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 7 119914839 119914839 C T KCND2 Silent p.R51R 0.05 TCGA-FW-A3R5-06 7 119915014 119915014 G A KCND2 Missense_Mutation p.E110K 0.20 deleterious(0.01) probably_damaging(0.97) TCGA-FW-A3R5-06 7 119915242 119915242 G A KCND2 Missense_Mutation p.V186M 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 7 119915289 119915289 G A KCND2 Silent p.A201A 0.10 TCGA-FW-A3R5-06 7 119915400 119915400 G A KCND2 Missense_Mutation p.M238I 0.20 tolerated(0.48) benign(0.204) TCGA-FW-A3R5-06 7 119915535 119915535 G A KCND2 Silent p.E283E 0.32 TCGA-FW-A3R5-06 7 119915564 119915564 G A KCND2 Missense_Mutation p.R293Q 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 120373013 120373013 C T KCND2 Missense_Mutation p.S391L 0.26 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 7 120385964 120385964 G A KCND2 Missense_Mutation p.R533Q 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-FW-A3R5-06 7 120428761 120428761 G A TSPAN12 Missense_Mutation p.S268F 0.33 deleterious(0.02) benign(0.05) TCGA-FW-A3R5-06 7 120428804 120428804 C T TSPAN12 Missense_Mutation p.E254K 0.24 tolerated(0.27) benign(0.005) TCGA-FW-A3R5-06 7 120608053 120608053 C T ING3 Silent p.L208L 0.30 TCGA-FW-A3R5-06 7 120609222 120609222 C T ING3 Missense_Mutation p.S291L 0.27 tolerated(0.28) benign(0.068) TCGA-FW-A3R5-06 7 120655881 120655881 G A CPED1 Missense_Mutation p.G138R 0.27 tolerated(0.28) benign(0.006) TCGA-FW-A3R5-06 7 120740003 120740003 C T CPED1 Missense_Mutation p.P258L 0.19 tolerated(0.13) benign(0) TCGA-FW-A3R5-06 7 120782024 120782024 C T CPED1 Intron 0.24 TCGA-FW-A3R5-06 7 120906771 120906771 C T CPED1 Silent p.L848L 0.22 TCGA-FW-A3R5-06 7 120935629 120935629 C T CPED1 Missense_Mutation p.H1002Y 0.31 deleterious(0) possibly_damaging(0.808) TCGA-FW-A3R5-06 7 120935769 120935769 G A CPED1 3'UTR 0.28 TCGA-FW-A3R5-06 7 120979048 120979048 G A WNT16 Silent p.L249L 0.31 TCGA-FW-A3R5-06 7 121650650 121650650 C T PTPRZ1 Missense_Mutation p.S517F 0.26 tolerated(0.84) benign(0.002) TCGA-FW-A3R5-06 7 121652070 121652070 C T PTPRZ1 Silent p.L990L 0.31 TCGA-FW-A3R5-06 7 121652734 121652734 C T PTPRZ1 Missense_Mutation p.P1212S 0.23 tolerated_low_confidence(0.76) benign(0.015) TCGA-FW-A3R5-06 7 121693987 121693987 C T PTPRZ1 Silent p.F2092F 0.28 TCGA-FW-A3R5-06 7 121694075 121694075 C T PTPRZ1 Missense_Mutation p.P2122S 0.30 tolerated(0.1) benign(0.131) TCGA-FW-A3R5-06 7 121694076 121694076 C T PTPRZ1 Missense_Mutation p.P2122L 0.31 deleterious(0.01) benign(0.306) TCGA-FW-A3R5-06 7 121942288 121942288 C T FEZF1 Silent p.K397K 0.26 TCGA-FW-A3R5-06 7 121944316 121944316 C T FEZF1 Missense_Mutation p.G59E 0.23 tolerated(0.06) possibly_damaging(0.843) TCGA-FW-A3R5-06 7 121944331 121944331 C T FEZF1 Missense_Mutation p.G54E 0.27 deleterious(0.02) possibly_damaging(0.797) TCGA-FW-A3R5-06 7 121960181 121960181 G A CADPS2 3'UTR 0.22 TCGA-FW-A3R5-06 7 121960374 121960374 G A CADPS2 Nonsense_Mutation p.R1246* 0.28 TCGA-FW-A3R5-06 7 122114506 122114506 G A CADPS2 Missense_Mutation p.H643Y 0.35 deleterious(0) benign(0.111) TCGA-FW-A3R5-06 7 122261582 122261582 C T CADPS2 Missense_Mutation p.E353K 0.22 deleterious(0.01) possibly_damaging(0.694) TCGA-FW-A3R5-06 7 122338165 122338165 G A RNF133 Missense_Mutation p.R270C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 7 122377072 122377072 G A CADPS2 Silent p.L130L 0.37 TCGA-FW-A3R5-06 7 122757604 122757604 G A SLC13A1 Missense_Mutation p.S524L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 122759247 122759247 G A SLC13A1 Missense_Mutation p.S467L 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-FW-A3R5-06 7 122769437 122769437 C T SLC13A1 Missense_Mutation p.R344K 0.17 tolerated(0.17) benign(0.012) TCGA-FW-A3R5-06 7 122774533 122774533 G A SLC13A1 Missense_Mutation p.S288F 0.25 deleterious(0) probably_damaging(0.912) TCGA-FW-A3R5-06 7 122787290 122787290 G A SLC13A1 Silent p.A245A 0.22 TCGA-FW-A3R5-06 7 122808458 122808458 C T SLC13A1 Silent p.G210G 0.18 TCGA-FW-A3R5-06 7 122809232 122809232 C T SLC13A1 Missense_Mutation p.G175R 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-FW-A3R5-06 7 122811931 122811931 G A SLC13A1 Missense_Mutation p.H86Y 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 122839956 122839956 G A SLC13A1 Silent p.F15F 0.22 TCGA-FW-A3R5-06 7 123152144 123152144 G A IQUB Missense_Mutation p.S84L 0.08 tolerated_low_confidence(0.3) benign(0.004) TCGA-FW-A3R5-06 7 123264747 123264747 C T ASB15 Silent p.I192I 0.21 TCGA-FW-A3R5-06 7 123267179 123267179 C T ASB15 Missense_Mutation p.A238V 0.15 tolerated(0.13) benign(0.168) TCGA-FW-A3R5-06 7 123302375 123302375 C T LMOD2 Silent p.F245F 0.12 TCGA-FW-A3R5-06 7 123593738 123593738 C T SPAM1 Silent p.F38F 0.09 TCGA-FW-A3R5-06 7 123594271 123594271 G A SPAM1 Nonsense_Mutation p.W216* 0.23 TCGA-FW-A3R5-06 7 123594435 123594435 C T SPAM1 Missense_Mutation p.P271S 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 7 123599966 123599966 C T SPAM1 Silent p.A491A 0.30 TCGA-FW-A3R5-06 7 123599975 123599975 C T SPAM1 Silent p.F494F 0.28 TCGA-FW-A3R5-06 7 124404084 124404084 G A GPR37 Missense_Mutation p.P316L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 124404085 124404085 G A GPR37 Missense_Mutation p.P316S 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 124404283 124404283 G A GPR37 Missense_Mutation p.P250S 0.26 deleterious(0.01) possibly_damaging(0.848) TCGA-FW-A3R5-06 7 126079098 126079098 G A GRM8 3'UTR 0.13 TCGA-FW-A3R5-06 7 126079218 126079218 G A GRM8 Silent p.S894S 0.30 TCGA-FW-A3R5-06 7 126173189 126173189 G A GRM8 Silent p.L749L 0.17 TCGA-FW-A3R5-06 7 126173416 126173416 G A GRM8 Missense_Mutation p.H674Y 0.21 tolerated(0.43) probably_damaging(0.998) TCGA-FW-A3R5-06 7 126410110 126410110 C T GRM8 Missense_Mutation p.R389Q 0.29 deleterious(0.03) benign(0.193) TCGA-FW-A3R5-06 7 12683868 12683868 G A SCIN Missense_Mutation p.E563K 0.28 tolerated(0.29) possibly_damaging(0.605) TCGA-FW-A3R5-06 7 126882788 126882788 G A GRM8 Silent p.S157S 0.10 TCGA-FW-A3R5-06 7 12691524 12691524 C T SCIN Missense_Mutation p.S673F 0.38 tolerated(0.28) probably_damaging(1) TCGA-FW-A3R5-06 7 127235596 127235596 C T FSCN3 Missense_Mutation p.S127F 0.27 deleterious(0.01) probably_damaging(0.931) TCGA-FW-A3R5-06 7 127239494 127239494 C T FSCN3 Missense_Mutation p.R394C 0.36 deleterious(0) probably_damaging(0.927) TCGA-FW-A3R5-06 7 127253129 127253129 C T PAX4 Missense_Mutation p.R213K 0.15 deleterious(0) possibly_damaging(0.624) TCGA-FW-A3R5-06 7 127253907 127253907 G A PAX4 Silent p.P147P 0.19 TCGA-FW-A3R5-06 7 127253908 127253908 G A PAX4 Missense_Mutation p.P147L 0.19 tolerated(0.13) benign(0.023) TCGA-FW-A3R5-06 7 127343298 127343298 C T SND1 Missense_Mutation p.S254L 0.32 deleterious(0.04) possibly_damaging(0.883) TCGA-FW-A3R5-06 7 1275593 1275593 C T UNCX Silent p.I192I 0.29 TCGA-FW-A3R5-06 7 127668746 127668746 C T LRRC4 Missense_Mutation p.E650K 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 127729538 127729538 C T SND1 Intron 0.23 TCGA-FW-A3R5-06 7 127954827 127954827 G A RBM28 Missense_Mutation p.P679S 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 7 128388731 128388731 C T CALU Missense_Mutation p.P40S 0.31 tolerated(0.36) benign(0.004) TCGA-FW-A3R5-06 7 128399014 128399014 C T CALU Missense_Mutation p.L177F 0.28 tolerated(0.06) possibly_damaging(0.77) TCGA-FW-A3R5-06 7 128445896 128445896 G A CCDC136 Missense_Mutation p.E344K 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 128452782 128452782 G A CCDC136 Silent p.V854V 0.31 TCGA-FW-A3R5-06 7 128454708 128454708 C T CCDC136 Missense_Mutation p.T927I 0.27 deleterious(0.03) benign(0.034) TCGA-FW-A3R5-06 7 128455945 128455945 C T CCDC136 Missense_Mutation p.P1108L 0.18 tolerated(0.07) benign(0.046) TCGA-FW-A3R5-06 7 128477589 128477589 C T FLNC Silent p.I279I 0.23 TCGA-FW-A3R5-06 7 128478853 128478853 G A FLNC Silent p.S469S 0.33 TCGA-FW-A3R5-06 7 128480613 128480613 G A FLNC Missense_Mutation p.E521K 0.33 deleterious(0.02) benign(0.403) TCGA-FW-A3R5-06 7 128482972 128482972 G A FLNC Silent p.A838A 0.11 TCGA-FW-A3R5-06 7 128482973 128482973 G A FLNC Missense_Mutation p.G839S 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-FW-A3R5-06 7 128483850 128483850 G A FLNC Missense_Mutation p.G938S 0.42 deleterious(0) probably_damaging(0.917) TCGA-FW-A3R5-06 7 128489559 128489559 C T FLNC Missense_Mutation p.P1709L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 7 128491627 128491627 C T FLNC Silent p.I1929I 0.27 TCGA-FW-A3R5-06 7 128491636 128491636 C T FLNC Silent p.F1932F 0.26 TCGA-FW-A3R5-06 7 128492726 128492726 G A FLNC Missense_Mutation p.S1975N 0.37 tolerated(0.09) benign(0.162) TCGA-FW-A3R5-06 7 128494141 128494141 G A FLNC Missense_Mutation p.E2200K 0.19 tolerated(0.16) benign(0) TCGA-FW-A3R5-06 7 128496919 128496919 C T FLNC Missense_Mutation p.A2502V 0.15 tolerated(0.13) benign(0.02) TCGA-FW-A3R5-06 7 128498132 128498132 C T FLNC Silent p.S2617S 0.22 TCGA-FW-A3R5-06 7 128498536 128498536 G A FLNC Missense_Mutation p.E2713K 0.40 deleterious(0.03) benign(0.106) TCGA-FW-A3R5-06 7 128503058 128503058 C T ATP6V1F Missense_Mutation p.P34S 0.33 tolerated(0.24) benign(0.264) TCGA-FW-A3R5-06 7 128615974 128615974 G A TNPO3 Missense_Mutation p.H693Y 0.28 tolerated(0.06) benign(0.007) TCGA-FW-A3R5-06 7 128615975 128615975 G T TNPO3 Nonsense_Mutation p.Y692* 0.28 TCGA-FW-A3R5-06 7 129095170 129095170 C T STRIP2 Silent p.F264F 0.07 TCGA-FW-A3R5-06 7 129096476 129096476 C T STRIP2 Missense_Mutation p.S344F 0.35 tolerated(0.72) probably_damaging(0.951) TCGA-FW-A3R5-06 7 129122724 129122724 C T STRIP2 Silent p.A697A 0.28 TCGA-FW-A3R5-06 7 129663406 129663406 G A ZC3HC1 Missense_Mutation p.P393L 0.28 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 7 129664305 129664305 G A ZC3HC1 Missense_Mutation p.S273L 0.35 deleterious(0.01) benign(0.311) TCGA-FW-A3R5-06 7 129691083 129691083 G A ZC3HC1 Missense_Mutation p.P42S 0.31 tolerated(0.51) benign(0.005) TCGA-FW-A3R5-06 7 129909563 129909563 C T CPA2 Missense_Mutation p.P70S 0.15 deleterious(0.03) probably_damaging(0.97) TCGA-FW-A3R5-06 7 129915067 129915067 G A CPA2 Missense_Mutation p.A189T 0.20 deleterious(0.02) probably_damaging(0.958) TCGA-FW-A3R5-06 7 129929579 129929579 C T CPA2 Missense_Mutation p.P418S 0.30 tolerated(0.15) benign(0.012) TCGA-FW-A3R5-06 7 129986368 129986368 C T CPA5 Silent p.S14S 0.22 TCGA-FW-A3R5-06 7 130007814 130007814 G A CPA5 Missense_Mutation p.S369N 0.26 tolerated(0.06) probably_damaging(0.973) TCGA-FW-A3R5-06 7 130417849 130417849 G A KLF14 3'UTR 0.33 TCGA-FW-A3R5-06 7 131189133 131189133 C T PODXL Nonsense_Mutation p.W538* 0.19 TCGA-FW-A3R5-06 7 131191022 131191022 C T PODXL Silent p.K436K 0.30 TCGA-FW-A3R5-06 7 131195771 131195771 C T PODXL Silent p.K174K 0.19 TCGA-FW-A3R5-06 7 131831414 131831414 C T PLXNA4 Missense_Mutation p.R1637Q 0.25 deleterious(0.04) probably_damaging(0.932) TCGA-FW-A3R5-06 7 131849943 131849943 C T PLXNA4 Missense_Mutation p.E1435K 0.35 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 131864564 131864564 G A PLXNA4 Silent p.F1252F 0.16 TCGA-FW-A3R5-06 7 131864581 131864581 C T PLXNA4 Missense_Mutation p.G1247S 0.37 tolerated(0.44) possibly_damaging(0.536) TCGA-FW-A3R5-06 7 131864654 131864654 G A PLXNA4 Silent p.S1222S 0.22 TCGA-FW-A3R5-06 7 131878824 131878824 G A PLXNA4 Silent p.F951F 0.21 TCGA-FW-A3R5-06 7 131908343 131908343 G A PLXNA4 Silent p.V680V 0.22 TCGA-FW-A3R5-06 7 132192395 132192395 G A PLXNA4 Missense_Mutation p.S353L 0.20 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 132192950 132192950 G A PLXNA4 Missense_Mutation p.S168L 0.21 deleterious(0.01) possibly_damaging(0.543) TCGA-FW-A3R5-06 7 132193081 132193081 C T PLXNA4 Silent p.E124E 0.21 TCGA-FW-A3R5-06 7 132937833 132937833 C T EXOC4 5'UTR 0.18 TCGA-FW-A3R5-06 7 132937834 132937834 C T EXOC4 5'UTR 0.17 TCGA-FW-A3R5-06 7 133502261 133502261 C T EXOC4 Silent p.T566T 0.16 TCGA-FW-A3R5-06 7 133883997 133883997 A T LRGUK Missense_Mutation p.Y524F 0.11 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 7 134127427 134127427 G A AKR1B1 3'UTR 0.28 TCGA-FW-A3R5-06 7 134256361 134256361 G A AKR1B15 Silent p.G147G 0.08 TCGA-FW-A3R5-06 7 134256405 134256405 G A AKR1B15 Missense_Mutation p.G162E 0.17 deleterious(0.04) benign(0.29) TCGA-FW-A3R5-06 7 134617988 134617988 C T CALD1 Silent p.R156R 0.29 TCGA-FW-A3R5-06 7 134617989 134617989 C T CALD1 Nonsense_Mutation p.Q157* 0.29 TCGA-FW-A3R5-06 7 134890719 134890719 G A WDR91 Missense_Mutation p.P229L 0.25 tolerated(0.59) benign(0) TCGA-FW-A3R5-06 7 135078869 135078869 G A CNOT4 Silent p.F476F 0.31 TCGA-FW-A3R5-06 7 135384291 135384291 C T SLC13A4 Silent p.K239K 0.26 TCGA-FW-A3R5-06 7 135386427 135386427 C T SLC13A4 Splice_Site p.X237_splice 0.28 TCGA-FW-A3R5-06 7 135392938 135392938 C T SLC13A4 Missense_Mutation p.A97T 0.15 tolerated(1) possibly_damaging(0.794) TCGA-FW-A3R5-06 7 135419000 135419000 G A FAM180A Missense_Mutation p.S82F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 135661955 135661955 G A MTPN 5'UTR 0.41 TCGA-FW-A3R5-06 7 136700041 136700041 G A CHRM2 Missense_Mutation p.M143I 0.30 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 7 136700713 136700713 G A CHRM2 Silent p.K367K 0.34 TCGA-FW-A3R5-06 7 136701059 136701059 G A CHRM2 3'UTR 0.30 TCGA-FW-A3R5-06 7 137028202 137028202 C T PTN 5'UTR 0.36 TCGA-FW-A3R5-06 7 137028221 137028221 C T PTN 5'UTR 0.08 TCGA-FW-A3R5-06 7 137569588 137569588 G A CREB3L2 Intron 0.45 TCGA-FW-A3R5-06 7 137570244 137570244 G A CREB3L2 Missense_Mutation p.L350F 0.28 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 137761260 137761260 C T AKR1D1 5'UTR 0.39 TCGA-FW-A3R5-06 7 137761261 137761261 C T AKR1D1 5'UTR 0.39 TCGA-FW-A3R5-06 7 138235915 138235915 C T TRIM24 Silent p.I417I 0.27 TCGA-FW-A3R5-06 7 138252230 138252230 C T TRIM24 Missense_Mutation p.P512L 0.27 deleterious(0.02) benign(0.129) TCGA-FW-A3R5-06 7 138314867 138314867 C T SVOPL Missense_Mutation p.E264K 0.16 tolerated(0.09) benign(0.039) TCGA-FW-A3R5-06 7 138394383 138394383 G A ATP6V0A4 Silent p.A805A 0.27 TCGA-FW-A3R5-06 7 138418941 138418941 G A ATP6V0A4 Missense_Mutation p.S544L 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 138487709 138487709 C T TMEM213 Silent p.I73I 0.20 TCGA-FW-A3R5-06 7 138522699 138522699 G A KIAA1549 Silent p.L1935L 0.28 TCGA-FW-A3R5-06 7 138566163 138566163 G A KIAA1549 Silent p.I1400I 0.32 TCGA-FW-A3R5-06 7 138602980 138602980 C T KIAA1549 Missense_Mutation p.M464I 0.25 tolerated(0.38) benign(0.001) TCGA-FW-A3R5-06 7 138603011 138603011 G A KIAA1549 Missense_Mutation p.T454I 0.32 deleterious(0.01) benign(0.295) TCGA-FW-A3R5-06 7 138713520 138713520 G A ZC3HAV1L Missense_Mutation p.P230S 0.22 tolerated(0.8) benign(0.004) TCGA-FW-A3R5-06 7 138738312 138738312 C T ZC3HAV1 Missense_Mutation p.M778I 0.22 deleterious(0.01) benign(0.239) TCGA-FW-A3R5-06 7 138745818 138745818 G T ZC3HAV1 Missense_Mutation p.P687H 0.09 deleterious(0) benign(0.123) TCGA-FW-A3R5-06 7 138768660 138768660 A T ZC3HAV1 Missense_Mutation p.L188H 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 7 138978066 138978066 C T UBN2 Missense_Mutation p.P1253L 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FW-A3R5-06 7 139225185 139225185 C T CLEC2L Silent p.C128C 0.59 TCGA-FW-A3R5-06 7 13935508 13935508 C T ETV1 Missense_Mutation p.E473K 0.30 tolerated(0.61) benign(0.252) TCGA-FW-A3R5-06 7 139416468 139416468 G A HIPK2 Silent p.L122L 0.32 TCGA-FW-A3R5-06 7 139636053 139636053 G A TBXAS1 Missense_Mutation p.E134K 0.29 tolerated(1) benign(0.013) TCGA-FW-A3R5-06 7 139653178 139653178 C T TBXAS1 Silent p.L201L 0.22 TCGA-FW-A3R5-06 7 139657436 139657436 C T TBXAS1 Missense_Mutation p.S278L 0.20 tolerated(1) benign(0.3) TCGA-FW-A3R5-06 7 139657446 139657446 C T TBXAS1 Silent p.S281S 0.23 TCGA-FW-A3R5-06 7 139717522 139717522 C T TBXAS1 Silent p.F519F 0.16 TCGA-FW-A3R5-06 7 139719887 139719887 C T TBXAS1 Silent p.I577I 0.30 TCGA-FW-A3R5-06 7 139724338 139724338 G A PARP12 3'UTR 0.24 TCGA-FW-A3R5-06 7 139727187 139727187 G A PARP12 Missense_Mutation p.S506F 0.30 deleterious(0) benign(0.085) TCGA-FW-A3R5-06 7 139741513 139741513 G A PARP12 Silent p.F371F 0.17 TCGA-FW-A3R5-06 7 139756733 139756733 C T PARP12 Missense_Mutation p.R228K 0.20 tolerated(0.15) probably_damaging(0.957) TCGA-FW-A3R5-06 7 139801824 139801824 G A KDM7A Missense_Mutation p.P522L 0.18 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 139826473 139826473 G A KDM7A Silent p.D284D 0.30 TCGA-FW-A3R5-06 7 140219477 140219477 G A DENND2A Missense_Mutation p.P985S 0.06 deleterious(0.01) possibly_damaging(0.821) TCGA-FW-A3R5-06 7 140258001 140258001 G A DENND2A Missense_Mutation p.S634L 0.25 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 7 140301677 140301677 G A DENND2A Missense_Mutation p.S174L 0.10 tolerated(0.26) benign(0.005) TCGA-FW-A3R5-06 7 140380881 140380881 C T ADCK2 Missense_Mutation p.P417S 0.08 tolerated(0.25) benign(0.263) TCGA-FW-A3R5-06 7 140434525 140434525 G A BRAF Missense_Mutation p.H725Y 0.28 deleterious(0) possibly_damaging(0.78) TCGA-FW-A3R5-06 7 140481402 140481402 C T BRAF Missense_Mutation p.G469E 0.17 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 7 140494159 140494159 G A BRAF Silent p.S363S 0.26 TCGA-FW-A3R5-06 7 141336797 141336797 C T AGK Missense_Mutation p.H236Y 0.17 tolerated(0.56) benign(0.002) TCGA-FW-A3R5-06 7 141408672 141408672 C T WEE2 Silent p.S38S 0.21 TCGA-FW-A3R5-06 7 141408673 141408673 C T WEE2 Nonsense_Mutation p.Q39* 0.21 TCGA-FW-A3R5-06 7 141478552 141478552 C T TAS2R4 Silent p.F88F 0.22 TCGA-FW-A3R5-06 7 141536282 141536282 C T PRSS37 Silent p.V207V 0.26 TCGA-FW-A3R5-06 7 141536293 141536293 C T PRSS37 Missense_Mutation p.G204R 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 141619083 141619083 G A OR9A4 Missense_Mutation p.M136I 0.32 deleterious(0.03) possibly_damaging(0.507) TCGA-FW-A3R5-06 7 141619380 141619380 G A OR9A4 Silent p.R235R 0.31 TCGA-FW-A3R5-06 7 141645147 141645147 C T CLEC5A Missense_Mutation p.G45R 0.38 tolerated(0.26) benign(0.039) TCGA-FW-A3R5-06 7 141672818 141672818 C T TAS2R38 Missense_Mutation p.M224I 0.25 tolerated(0.18) benign(0.419) TCGA-FW-A3R5-06 7 141720869 141720869 C T MGAM Missense_Mutation p.R182C 0.35 deleterious(0.02) probably_damaging(0.964) TCGA-FW-A3R5-06 7 141721479 141721479 G A MGAM Missense_Mutation p.E218K 0.24 tolerated(0.19) benign(0.001) TCGA-FW-A3R5-06 7 141722084 141722084 G T MGAM Missense_Mutation p.G243W 0.16 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 7 141734499 141734499 G A MGAM Missense_Mutation p.R606K 0.20 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 7 141740591 141740591 C T MGAM Missense_Mutation p.L815F 0.30 deleterious(0.01) possibly_damaging(0.903) TCGA-FW-A3R5-06 7 141752717 141752717 C T MGAM Missense_Mutation p.P1031L 0.20 tolerated(0.15) benign(0.057) TCGA-FW-A3R5-06 7 141752740 141752740 C T MGAM Missense_Mutation p.R1039C 0.16 deleterious(0) possibly_damaging(0.448) TCGA-FW-A3R5-06 7 141765557 141765557 G A MGAM Intron 0.31 TCGA-FW-A3R5-06 7 141765585 141765585 G A MGAM Intron 0.26 TCGA-FW-A3R5-06 7 141770881 141770881 C T MGAM Intron 0.35 TCGA-FW-A3R5-06 7 141773915 141773915 C T MGAM Intron 0.25 TCGA-FW-A3R5-06 7 141794427 141794427 G A MGAM Missense_Mutation p.M1542I 0.27 deleterious(0) benign(0.038) TCGA-FW-A3R5-06 7 141803210 141803210 C T MGAM Missense_Mutation p.P1823S 0.24 tolerated(0.86) benign(0.002) TCGA-FW-A3R5-06 7 14188707 14188707 C T DGKB 3'UTR 0.33 TCGA-FW-A3R5-06 7 141952311 141952311 C T PRSS58 Missense_Mutation p.G186E 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 141952422 141952422 G A PRSS58 Missense_Mutation p.P149L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 141955043 141955043 G A PRSS58 Missense_Mutation p.H90Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 141957573 141957573 G A PRSS58 5'UTR 0.32 TCGA-FW-A3R5-06 7 142001152 142001152 G A TRBV2 Missense_Mutation p.D49N 0.19 TCGA-FW-A3R5-06 7 142001208 142001208 C T TRBV2 Silent p.S67S 0.18 TCGA-FW-A3R5-06 7 142013066 142013066 C T TRBV4-1 Missense_Mutation p.L11F 0.37 tolerated(0.12) unknown(0) TCGA-FW-A3R5-06 7 142013265 142013265 G A TRBV4-1 Silent p.L40L 0.29 TCGA-FW-A3R5-06 7 142021110 142021110 G A TRBV5-1 Silent p.L30L 0.22 TCGA-FW-A3R5-06 7 142021257 142021257 C T TRBV5-1 Silent p.F79F 0.34 TCGA-FW-A3R5-06 7 142021316 142021316 C T TRBV5-1 Missense_Mutation p.T99I 0.15 tolerated(0.21) benign(0.005) TCGA-FW-A3R5-06 7 142028450 142028450 C T TRBV6-1 Silent p.L62L 0.19 TCGA-FW-A3R5-06 7 142028454 142028454 G A TRBV6-1 Missense_Mutation p.R63K 0.19 tolerated(0.28) benign(0.125) TCGA-FW-A3R5-06 7 142032363 142032363 C T TRBV7-1 Silent p.G61G 0.19 TCGA-FW-A3R5-06 7 142032393 142032393 G A TRBV7-1 Silent p.K71K 0.21 TCGA-FW-A3R5-06 7 142032418 142032418 C T TRBV7-1 Missense_Mutation p.P80S 0.43 tolerated(0.14) benign(0.328) TCGA-FW-A3R5-06 7 142032486 142032486 G A TRBV7-1 Silent p.Q102Q 0.41 TCGA-FW-A3R5-06 7 142045324 142045324 G A TRBV4-2 5'UTR 0.18 TCGA-FW-A3R5-06 7 142045373 142045373 G A TRBV4-2 Missense_Mutation p.R4K 0.12 tolerated(0.32) unknown(0) TCGA-FW-A3R5-06 7 142045401 142045401 C T TRBV4-2 Silent p.L13L 0.25 TCGA-FW-A3R5-06 7 142045526 142045526 C T TRBV4-2 Silent p.P18P 0.23 TCGA-FW-A3R5-06 7 142099585 142099585 G A TRBV7-8 Nonsense_Mutation p.Q73* 0.20 TCGA-FW-A3R5-06 7 142099651 142099651 G A TRBV7-8 Missense_Mutation p.L51F 0.18 tolerated(0.1) benign(0.424) TCGA-FW-A3R5-06 7 142104269 142104269 G A TRBV6-9 Missense_Mutation p.H66Y 0.32 tolerated(0.75) benign(0.007) TCGA-FW-A3R5-06 7 142104366 142104366 C T TRBV6-9 Silent p.K33K 0.08 TCGA-FW-A3R5-06 7 142111471 142111471 G A TRBV5-7 Missense_Mutation p.P89S 0.37 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 7 142120058 142120058 C T TRBV7-7 Missense_Mutation p.D37N 0.11 tolerated(0.56) benign(0.006) TCGA-FW-A3R5-06 7 142124269 142124269 G A TRBV6-8 Missense_Mutation p.A70V 0.19 tolerated(0.25) benign(0.003) TCGA-FW-A3R5-06 7 142124345 142124345 C T TRBV6-8 Missense_Mutation p.D45N 0.30 tolerated(0.4) benign(0.027) TCGA-FW-A3R5-06 7 142124407 142124407 G A TRBV6-8 Missense_Mutation p.T24I 0.37 tolerated(0.06) benign(0.341) TCGA-FW-A3R5-06 7 142131446 142131446 C T TRBV5-6 Silent p.G103G 0.30 TCGA-FW-A3R5-06 7 142131517 142131517 G A TRBV5-6 Missense_Mutation p.P80S 0.26 tolerated(0.21) benign(0.026) TCGA-FW-A3R5-06 7 142162089 142162089 C T TRBV6-6 Silent p.L62L 0.30 TCGA-FW-A3R5-06 7 142162378 142162378 G T TRBV6-6 5'UTR 0.30 TCGA-FW-A3R5-06 7 142168621 142168621 T A TRBV5-4 Missense_Mutation p.R34S 0.25 deleterious(0.02) benign(0.135) TCGA-FW-A3R5-06 7 142168901 142168901 G A TRBV5-4 5'UTR 0.30 TCGA-FW-A3R5-06 7 142176525 142176525 G A TRBV7-4 Missense_Mutation p.L51F 0.30 tolerated(0.1) benign(0.316) TCGA-FW-A3R5-06 7 142176752 142176752 G A TRBV7-4 Silent p.F13F 0.31 TCGA-FW-A3R5-06 7 142180580 142180580 G A TRBV6-5 Silent p.F93F 0.21 TCGA-FW-A3R5-06 7 142180727 142180727 C T TRBV6-5 Silent p.Q44Q 0.07 TCGA-FW-A3R5-06 7 142198025 142198025 G A TRBV11-2 RNA 0.26 TCGA-FW-A3R5-06 7 142206510 142206510 G A TRBV10-2 3'Flank 0.19 TCGA-FW-A3R5-06 7 142206725 142206725 G A TRBV10-2 Nonsense_Mutation p.Q44* 0.35 TCGA-FW-A3R5-06 7 142206950 142206950 C T TRBV10-2 Missense_Mutation p.R4K 0.24 tolerated(0.71) benign(0.016) TCGA-FW-A3R5-06 7 142206977 142206977 G A TRBV10-2 5'UTR 0.37 TCGA-FW-A3R5-06 7 142223992 142223992 C T TRBV11-1 Missense_Mutation p.G59R 0.18 tolerated(0.25) benign(0.208) TCGA-FW-A3R5-06 7 142232050 142232050 T G TRBV10-1 5'UTR 0.16 TCGA-FW-A3R5-06 7 142232051 142232051 C T TRBV10-1 5'UTR 0.16 TCGA-FW-A3R5-06 7 142247209 142247209 G A TRBV7-3 Missense_Mutation p.R83W 0.27 TCGA-FW-A3R5-06 7 142326879 142326879 G A TRBV19 Silent p.G59G 0.24 TCGA-FW-A3R5-06 7 142326973 142326973 G A TRBV19 Missense_Mutation p.E91K 0.18 tolerated(0.13) benign(0.058) TCGA-FW-A3R5-06 7 142334236 142334236 G A TRBV20-1 5'UTR 0.23 TCGA-FW-A3R5-06 7 142364233 142364233 C T TRBV24-1 5'UTR 0.18 TCGA-FW-A3R5-06 7 142378908 142378908 G A MTRNR2L6 3'Flank 0.30 TCGA-FW-A3R5-06 7 142378989 142378989 C T MTRNR2L6 3'Flank 0.27 TCGA-FW-A3R5-06 7 142458426 142458426 G A PRSS1 Missense_Mutation p.D21N 0.16 deleterious(0.02) possibly_damaging(0.873) TCGA-FW-A3R5-06 7 142479923 142479923 G A PRSS3P2 RNA 0.20 TCGA-FW-A3R5-06 7 142480013 142480013 G A PRSS3P2 RNA 0.07 TCGA-FW-A3R5-06 7 142480031 142480031 G A PRSS3P2 RNA 0.24 TCGA-FW-A3R5-06 7 142481378 142481378 G A PRSS3P2 Intron 0.14 TCGA-FW-A3R5-06 7 142482341 142482341 G A PRSS3P2 RNA 0.20 TCGA-FW-A3R5-06 7 142498732 142498732 G A TRBC2 Silent p.L3L 0.20 TCGA-FW-A3R5-06 7 142499852 142499852 C T TRBC2 Missense_Mutation p.T157I 0.22 tolerated(0.47) possibly_damaging(0.468) TCGA-FW-A3R5-06 7 142510528 142510528 C T TRBV30 Silent p.A26A 0.24 TCGA-FW-A3R5-06 7 142561068 142561068 C T EPHB6 Missense_Mutation p.S28L 0.26 tolerated(0.86) benign(0.212) TCGA-FW-A3R5-06 7 142561799 142561799 C T EPHB6 Missense_Mutation p.P81S 0.26 deleterious(0.01) benign(0.004) TCGA-FW-A3R5-06 7 142564239 142564239 C T EPHB6 Missense_Mutation p.P488L 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 7 142565412 142565412 C T EPHB6 Silent p.S599S 0.35 TCGA-FW-A3R5-06 7 142566816 142566816 C T EPHB6 Silent p.F791F 0.21 TCGA-FW-A3R5-06 7 142569570 142569570 G A TRPV6 Missense_Mutation p.R690C 0.26 deleterious(0.02) possibly_damaging(0.556) TCGA-FW-A3R5-06 7 142569571 142569571 G A TRPV6 Silent p.S689S 0.26 TCGA-FW-A3R5-06 7 142571444 142571444 C T TRPV6 Silent p.E515E 0.10 TCGA-FW-A3R5-06 7 142572322 142572322 G A TRPV6 Silent p.L458L 0.34 TCGA-FW-A3R5-06 7 142572875 142572875 C T TRPV6 Missense_Mutation p.E389K 0.16 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 7 142574200 142574200 G A TRPV6 Silent p.L241L 0.41 TCGA-FW-A3R5-06 7 142574244 142574244 C T TRPV6 Missense_Mutation p.D227N 0.35 tolerated(0.13) benign(0.007) TCGA-FW-A3R5-06 7 142605697 142605697 C T TRPV5 Missense_Mutation p.E725K 0.27 deleterious(0.02) possibly_damaging(0.619) TCGA-FW-A3R5-06 7 142605896 142605896 A C TRPV5 Missense_Mutation p.D658E 0.17 tolerated(0.37) benign(0.005) TCGA-FW-A3R5-06 7 142609852 142609852 C T TRPV5 Missense_Mutation p.M528I 0.29 tolerated(0.28) benign(0.159) TCGA-FW-A3R5-06 7 142612498 142612498 C T TRPV5 Missense_Mutation p.G422E 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 142612675 142612675 C T TRPV5 Missense_Mutation p.A396T 0.20 deleterious(0.04) possibly_damaging(0.633) TCGA-FW-A3R5-06 7 142612703 142612703 C T TRPV5 Silent p.L386L 0.26 TCGA-FW-A3R5-06 7 142625187 142625187 C T TRPV5 Missense_Mutation p.R302Q 0.16 tolerated(0.16) benign(0.043) TCGA-FW-A3R5-06 7 142625942 142625942 G A TRPV5 Silent p.I202I 0.19 TCGA-FW-A3R5-06 7 142626122 142626122 G A TRPV5 Missense_Mutation p.S194F 0.32 deleterious(0.03) possibly_damaging(0.799) TCGA-FW-A3R5-06 7 142626169 142626169 G A TRPV5 Silent p.I178I 0.24 TCGA-FW-A3R5-06 7 142626553 142626553 G A TRPV5 Missense_Mutation p.R153C 0.28 tolerated(0.08) benign(0.052) TCGA-FW-A3R5-06 7 142636722 142636722 C T C7orf34 Missense_Mutation p.P27S 0.19 tolerated_low_confidence(0.54) benign(0.012) TCGA-FW-A3R5-06 7 142643344 142643344 G A KEL Silent p.L422L 0.09 TCGA-FW-A3R5-06 7 142643391 142643391 C T KEL Missense_Mutation p.R406Q 0.34 deleterious(0.01) probably_damaging(0.924) TCGA-FW-A3R5-06 7 142650990 142650990 C T KEL Silent p.P326P 0.19 TCGA-FW-A3R5-06 7 142655514 142655514 C T KEL Silent p.E134E 0.23 TCGA-FW-A3R5-06 7 142658103 142658103 G A KEL Silent p.F104F 0.20 TCGA-FW-A3R5-06 7 142659425 142659425 C T KEL 5'UTR 0.35 TCGA-FW-A3R5-06 7 142723368 142723368 G A OR9A2 Silent p.F284F 0.26 TCGA-FW-A3R5-06 7 142723973 142723973 C T OR9A2 Missense_Mutation p.G83R 0.30 tolerated(0.06) benign(0.157) TCGA-FW-A3R5-06 7 142724037 142724037 G A OR9A2 Silent p.F61F 0.26 TCGA-FW-A3R5-06 7 142749482 142749482 C T OR6V1 Silent p.F15F 0.28 TCGA-FW-A3R5-06 7 142750008 142750008 C T OR6V1 Missense_Mutation p.R191C 0.26 tolerated(0.11) benign(0.035) TCGA-FW-A3R5-06 7 142750032 142750032 C T OR6V1 Silent p.L199L 0.32 TCGA-FW-A3R5-06 7 142750359 142750359 G A OR6V1 Missense_Mutation p.G308S 0.33 tolerated(0.37) benign(0.01) TCGA-FW-A3R5-06 7 142836195 142836195 C T PIP Missense_Mutation p.P77S 0.24 tolerated(0.23) benign(0.053) TCGA-FW-A3R5-06 7 142836648 142836648 G A PIP Silent p.R118R 0.32 TCGA-FW-A3R5-06 7 142836667 142836667 G A PIP Missense_Mutation p.D125N 0.26 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 7 142836687 142836687 C T PIP Silent p.P131P 0.25 TCGA-FW-A3R5-06 7 142880658 142880658 C T TAS2R39 Silent p.I49I 0.39 TCGA-FW-A3R5-06 7 142880804 142880804 C T TAS2R39 Missense_Mutation p.S98L 0.29 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 7 142881021 142881021 C T TAS2R39 Silent p.F170F 0.23 TCGA-FW-A3R5-06 7 142881273 142881273 G A TAS2R39 Missense_Mutation p.M254I 0.23 tolerated(0.08) benign(0.192) TCGA-FW-A3R5-06 7 142919877 142919877 G A TAS2R40 Missense_Mutation p.D236N 0.06 tolerated(0.13) benign(0.371) TCGA-FW-A3R5-06 7 142919888 142919888 G A TAS2R40 Missense_Mutation p.M239I 0.22 tolerated(0.07) benign(0.088) TCGA-FW-A3R5-06 7 142962297 142962297 C T GSTK1 Missense_Mutation p.L166F 0.36 tolerated_low_confidence(0.08) benign(0) TCGA-FW-A3R5-06 7 143013383 143013383 C T CLCN1 Silent p.P26P 0.16 TCGA-FW-A3R5-06 7 143013423 143013423 G A CLCN1 Missense_Mutation p.G40R 0.25 tolerated_low_confidence(0.07) benign(0.079) TCGA-FW-A3R5-06 7 143018840 143018840 C T CLCN1 Missense_Mutation p.R199C 0.24 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 7 143020469 143020469 G A CLCN1 Missense_Mutation p.G255E 0.28 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 7 143027960 143027960 C T CLCN1 Nonsense_Mutation p.R317* 0.30 TCGA-FW-A3R5-06 7 143048907 143048907 C T CLCN1 Missense_Mutation p.P939L 0.34 tolerated_low_confidence(0.06) benign(0.002) TCGA-FW-A3R5-06 7 143049018 143049018 G A CLCN1 Missense_Mutation p.R976Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-FW-A3R5-06 7 143049029 143049029 G A CLCN1 Missense_Mutation p.E980K 0.21 tolerated_low_confidence(0.08) benign(0.105) TCGA-FW-A3R5-06 7 143049044 143049044 G A CLCN1 Missense_Mutation p.E985K 0.23 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FW-A3R5-06 7 143053611 143053611 G A FAM131B 3'UTR 0.20 TCGA-FW-A3R5-06 7 143054022 143054022 C T FAM131B Missense_Mutation p.S235N 0.21 tolerated(0.21) probably_damaging(0.997) TCGA-FW-A3R5-06 7 143055978 143055978 C T FAM131B Silent p.R136R 0.21 TCGA-FW-A3R5-06 7 143057231 143057231 T A FAM131B Missense_Mutation p.I14F 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.775) TCGA-FW-A3R5-06 7 143096028 143096028 C T EPHA1 Silent p.S334S 0.30 TCGA-FW-A3R5-06 7 143098600 143098600 G A EPHA1 Silent p.S83S 0.21 TCGA-FW-A3R5-06 7 143104721 143104721 C T EPHA1 Missense_Mutation p.D45N 0.08 tolerated(0.31) probably_damaging(1) TCGA-FW-A3R5-06 7 143104761 143104761 C T EPHA1 Missense_Mutation p.M31I 0.28 deleterious(0.01) benign(0.003) TCGA-FW-A3R5-06 7 143141007 143141007 C T TAS2R60 Silent p.F154F 0.28 TCGA-FW-A3R5-06 7 143141025 143141025 C T TAS2R60 Silent p.F160F 0.25 TCGA-FW-A3R5-06 7 143141359 143141359 C T TAS2R60 Missense_Mutation p.P272S 0.31 tolerated(0.57) benign(0.377) TCGA-FW-A3R5-06 7 143175137 143175137 C T TAS2R41 Silent p.L58L 0.18 TCGA-FW-A3R5-06 7 143175463 143175463 G A TAS2R41 Silent p.G166G 0.25 TCGA-FW-A3R5-06 7 143175576 143175576 T A TAS2R41 Missense_Mutation p.I204N 0.30 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 7 143175682 143175682 C T TAS2R41 Silent p.F239F 0.33 TCGA-FW-A3R5-06 7 143175836 143175836 C T TAS2R41 Nonsense_Mutation p.R291* 0.27 TCGA-FW-A3R5-06 7 143400158 143400158 G A FAM115C Missense_Mutation p.G24D 0.22 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 7 143400516 143400516 G A FAM115C Silent p.V143V 0.13 TCGA-FW-A3R5-06 7 143453470 143453470 C T CTAGE6 Missense_Mutation p.E428K 0.10 tolerated(0.08) benign(0.059) TCGA-FW-A3R5-06 7 143454109 143454109 C T CTAGE6 Missense_Mutation p.E215K 0.15 deleterious(0.02) possibly_damaging(0.854) TCGA-FW-A3R5-06 7 143573340 143573340 G A FAM115A Missense_Mutation p.S121F 0.28 deleterious(0.03) possibly_damaging(0.597) TCGA-FW-A3R5-06 7 143632848 143632848 G A OR2F2 Missense_Mutation p.D175N 0.33 tolerated(1) benign(0.152) TCGA-FW-A3R5-06 7 143633044 143633044 C A OR2F2 Missense_Mutation p.T240K 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 143633133 143633133 C T OR2F2 Nonsense_Mutation p.Q270* 0.29 TCGA-FW-A3R5-06 7 143657088 143657088 G A OR2F1 Missense_Mutation p.V9M 0.09 tolerated(0.1) benign(0.017) TCGA-FW-A3R5-06 7 143657090 143657090 G A OR2F1 Silent p.V9V 0.26 TCGA-FW-A3R5-06 7 143657106 143657106 C T OR2F1 Missense_Mutation p.L15F 0.30 deleterious(0.01) benign(0.112) TCGA-FW-A3R5-06 7 143657918 143657918 G A OR2F1 Silent p.L285L 0.17 TCGA-FW-A3R5-06 7 143701182 143701182 C T OR6B1 Silent p.F31F 0.14 TCGA-FW-A3R5-06 7 143701183 143701183 C T OR6B1 Missense_Mutation p.L32F 0.14 tolerated(0.1) benign(0.059) TCGA-FW-A3R5-06 7 143701557 143701557 C T OR6B1 Silent p.S156S 0.37 TCGA-FW-A3R5-06 7 143701558 143701558 C T OR6B1 Silent p.L157L 0.37 TCGA-FW-A3R5-06 7 143747606 143747606 C T OR2A5 Silent p.L38L 0.33 TCGA-FW-A3R5-06 7 143747663 143747663 C T OR2A5 Missense_Mutation p.P57S 0.30 deleterious(0.02) benign(0.252) TCGA-FW-A3R5-06 7 143748099 143748099 C T OR2A5 Missense_Mutation p.A202V 0.14 tolerated(0.1) benign(0.021) TCGA-FW-A3R5-06 7 143748223 143748223 C T OR2A5 Silent p.S243S 0.07 TCGA-FW-A3R5-06 7 143748286 143748286 C T OR2A5 Silent p.S264S 0.31 TCGA-FW-A3R5-06 7 143771318 143771318 G A OR2A25 Silent p.G2G 0.21 TCGA-FW-A3R5-06 7 143771847 143771847 G A OR2A25 Missense_Mutation p.E179K 0.28 deleterious(0) benign(0.436) TCGA-FW-A3R5-06 7 143771993 143771993 C T OR2A25 Silent p.I227I 0.18 TCGA-FW-A3R5-06 7 143772241 143772241 C T OR2A25 Missense_Mutation p.S310L 0.26 deleterious(0) probably_damaging(0.966) TCGA-FW-A3R5-06 7 14378223 14378223 C T DGKB Missense_Mutation p.R681Q 0.31 deleterious(0.04) probably_damaging(0.984) TCGA-FW-A3R5-06 7 143793092 143793092 G A OR2A12 Missense_Mutation p.G298R 0.33 tolerated(0.1) benign(0.13) TCGA-FW-A3R5-06 7 143793109 143793109 C T OR2A12 Silent p.V303V 0.24 TCGA-FW-A3R5-06 7 143807307 143807307 C T OR2A2 Missense_Mutation p.S211F 0.25 tolerated(0.08) benign(0.027) TCGA-FW-A3R5-06 7 143807339 143807339 G A OR2A2 Missense_Mutation p.G222R 0.30 tolerated(0.39) benign(0.011) TCGA-FW-A3R5-06 7 143827007 143827007 G A OR2A14 Missense_Mutation p.E268K 0.27 deleterious(0.02) benign(0.214) TCGA-FW-A3R5-06 7 143955944 143955944 C T OR2A7 Missense_Mutation p.G260R 0.09 tolerated(0.46) possibly_damaging(0.905) TCGA-FW-A3R5-06 7 143956075 143956075 G A OR2A7 Missense_Mutation p.S216L 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 143956447 143956447 G A OR2A7 Missense_Mutation p.S92F 0.13 deleterious(0.03) probably_damaging(0.933) TCGA-FW-A3R5-06 7 144059859 144059859 G A ARHGEF5 Missense_Mutation p.V33I 0.13 tolerated(1) benign(0) TCGA-FW-A3R5-06 7 144060193 144060193 G A ARHGEF5 Missense_Mutation p.G144E 0.21 deleterious(0.03) benign(0.319) TCGA-FW-A3R5-06 7 144060402 144060402 G A ARHGEF5 Missense_Mutation p.E214K 0.17 tolerated(0.14) benign(0.008) TCGA-FW-A3R5-06 7 144062345 144062345 G A ARHGEF5 Silent p.R861R 0.10 TCGA-FW-A3R5-06 7 144062523 144062523 C T ARHGEF5 Missense_Mutation p.P921S 0.17 tolerated(0.2) benign(0.063) TCGA-FW-A3R5-06 7 144071872 144071872 G A ARHGEF5 Silent p.E1396E 0.13 TCGA-FW-A3R5-06 7 144098263 144098263 C T NOBOX Silent p.G240G 0.36 TCGA-FW-A3R5-06 7 144098412 144098412 C T NOBOX Missense_Mutation p.E191K 0.39 tolerated(0.09) benign(0.174) TCGA-FW-A3R5-06 7 144098545 144098545 G A NOBOX Silent p.V146V 0.33 TCGA-FW-A3R5-06 7 144098663 144098663 G A NOBOX Missense_Mutation p.A107V 0.10 tolerated(0.08) benign(0.028) TCGA-FW-A3R5-06 7 146536809 146536809 G A CNTNAP2 Missense_Mutation p.G72E 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 146805352 146805352 G A CNTNAP2 Missense_Mutation p.E222K 0.37 deleterious(0.01) possibly_damaging(0.628) TCGA-FW-A3R5-06 7 146825865 146825865 C T CNTNAP2 Silent p.I340I 0.25 TCGA-FW-A3R5-06 7 146829430 146829430 G A CNTNAP2 Missense_Mutation p.D393N 0.25 tolerated(0.13) benign(0.049) TCGA-FW-A3R5-06 7 147259245 147259245 C T CNTNAP2 Missense_Mutation p.S598F 0.12 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 7 14775702 14775702 G A DGKB Missense_Mutation p.P96S 0.21 tolerated(0.17) benign(0.222) TCGA-FW-A3R5-06 7 1478473 1478473 G A MICALL2 Intron 0.24 TCGA-FW-A3R5-06 7 147926752 147926752 C T CNTNAP2 Nonsense_Mutation p.R1088* 0.19 TCGA-FW-A3R5-06 7 14797324 14797324 C T DGKB Missense_Mutation p.E35K 0.21 deleterious(0.01) possibly_damaging(0.698) TCGA-FW-A3R5-06 7 148112648 148112648 G A CNTNAP2 Missense_Mutation p.M1312I 0.15 tolerated(0.57) benign(0) TCGA-FW-A3R5-06 7 148112693 148112693 G A CNTNAP2 Silent p.K1327K 0.38 TCGA-FW-A3R5-06 7 148703040 148703040 G A PDIA4 Missense_Mutation p.P413S 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 7 148768966 148768966 G A ZNF786 Missense_Mutation p.P300S 0.25 tolerated(0.67) benign(0.004) TCGA-FW-A3R5-06 7 148801858 148801858 G A ZNF425 Missense_Mutation p.R369W 0.23 tolerated(0.12) possibly_damaging(0.78) TCGA-FW-A3R5-06 7 14880842 14880842 G A DGKB Missense_Mutation p.S16F 0.29 deleterious(0.04) benign(0.142) TCGA-FW-A3R5-06 7 148809282 148809282 G A ZNF425 Missense_Mutation p.P84L 0.07 tolerated(0.76) benign(0.002) TCGA-FW-A3R5-06 7 148921668 148921668 C T ZNF282 Silent p.L649L 0.23 TCGA-FW-A3R5-06 7 148921717 148921717 C T ZNF282 Missense_Mutation p.P665L 0.29 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 7 148951279 148951279 A G ZNF212 Missense_Mutation p.R421G 0.30 tolerated(0.27) probably_damaging(0.997) TCGA-FW-A3R5-06 7 148963691 148963691 C T ZNF783 Missense_Mutation p.A97V 0.23 tolerated(0.26) possibly_damaging(0.532) TCGA-FW-A3R5-06 7 148963692 148963692 C T ZNF783 Silent p.A97A 0.22 TCGA-FW-A3R5-06 7 148975494 148975494 C T ZNF783 Silent p.L226L 0.08 TCGA-FW-A3R5-06 7 148975505 148975505 C T ZNF783 Missense_Mutation p.P230L 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-FW-A3R5-06 7 149129188 149129188 G A ZNF777 Silent p.P725P 0.18 TCGA-FW-A3R5-06 7 149129189 149129189 G A ZNF777 Missense_Mutation p.P725L 0.18 deleterious(0.02) probably_damaging(0.958) TCGA-FW-A3R5-06 7 149428833 149428833 C T KRBA1 Silent p.L739L 0.24 TCGA-FW-A3R5-06 7 149430317 149430317 C T KRBA1 Silent p.L757L 0.21 TCGA-FW-A3R5-06 7 149468110 149468110 G A ZNF467 Silent p.T4T 0.25 TCGA-FW-A3R5-06 7 149477052 149477052 C T SSPO RNA 0.57 TCGA-FW-A3R5-06 7 149477866 149477866 G A SSPO Splice_Site 0.33 TCGA-FW-A3R5-06 7 149481113 149481113 G A SSPO RNA 0.26 TCGA-FW-A3R5-06 7 149482623 149482623 G A SSPO RNA 0.33 TCGA-FW-A3R5-06 7 149486857 149486857 C T SSPO RNA 0.33 TCGA-FW-A3R5-06 7 149490673 149490673 G A SSPO RNA 0.36 TCGA-FW-A3R5-06 7 149493792 149493792 C T SSPO RNA 0.15 TCGA-FW-A3R5-06 7 149493797 149493797 G A SSPO RNA 0.22 TCGA-FW-A3R5-06 7 149494363 149494363 C T SSPO RNA 0.16 TCGA-FW-A3R5-06 7 149500563 149500563 G A SSPO Intron 0.23 TCGA-FW-A3R5-06 7 149502526 149502526 C T SSPO RNA 0.39 TCGA-FW-A3R5-06 7 149503946 149503946 C T SSPO RNA 0.28 TCGA-FW-A3R5-06 7 149508081 149508081 C T SSPO RNA 0.12 TCGA-FW-A3R5-06 7 149508805 149508805 G A SSPO Intron 0.11 TCGA-FW-A3R5-06 7 149509044 149509044 C T SSPO RNA 0.33 TCGA-FW-A3R5-06 7 149509362 149509362 G A SSPO RNA 0.14 TCGA-FW-A3R5-06 7 149509363 149509363 G A SSPO RNA 0.14 TCGA-FW-A3R5-06 7 149516467 149516467 C T SSPO RNA 0.15 TCGA-FW-A3R5-06 7 149521605 149521605 C T SSPO RNA 0.29 TCGA-FW-A3R5-06 7 149576474 149576474 C T ATP6V0E2 Missense_Mutation p.S117L 0.31 tolerated_low_confidence(1) possibly_damaging(0.602) TCGA-FW-A3R5-06 7 149983537 149983537 G A ACTR3C Silent p.I130I 0.07 TCGA-FW-A3R5-06 7 149986573 149986573 G A ACTR3C Missense_Mutation p.P88L 0.12 tolerated(0.15) benign(0.012) TCGA-FW-A3R5-06 7 150027920 150027920 G A ZBED6CL Missense_Mutation p.E143K 0.24 tolerated(0.23) benign(0.011) TCGA-FW-A3R5-06 7 150028044 150028044 C T ZBED6CL Missense_Mutation p.S184L 0.34 tolerated(0.15) probably_damaging(0.998) TCGA-FW-A3R5-06 7 150034769 150034769 C T LRRC61 3'UTR 0.29 TCGA-FW-A3R5-06 7 150034783 150034783 C T LRRC61 3'UTR 0.53 TCGA-FW-A3R5-06 7 150069245 150069245 C T REPIN1 Silent p.P362P 0.44 TCGA-FW-A3R5-06 7 150069302 150069302 C T REPIN1 Silent p.A381A 0.27 TCGA-FW-A3R5-06 7 150163996 150163996 C T GIMAP8 Silent p.F70F 0.31 TCGA-FW-A3R5-06 7 150163999 150163999 C T GIMAP8 Silent p.S71S 0.31 TCGA-FW-A3R5-06 7 150164371 150164371 G A GIMAP8 Silent p.T195T 0.34 TCGA-FW-A3R5-06 7 150171384 150171384 G A GIMAP8 Missense_Mutation p.G323S 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 7 150171584 150171584 C T GIMAP8 Silent p.I389I 0.20 TCGA-FW-A3R5-06 7 150174291 150174291 C T GIMAP8 Missense_Mutation p.T474I 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 150174326 150174326 G A GIMAP8 Missense_Mutation p.G486R 0.37 tolerated(0.17) benign(0.22) TCGA-FW-A3R5-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.23 tolerated(0.95) benign(0) TCGA-FW-A3R5-06 7 150266998 150266998 C T GIMAP4 Silent p.A3A 0.22 TCGA-FW-A3R5-06 7 150267063 150267063 G A GIMAP4 Intron 0.15 TCGA-FW-A3R5-06 7 150267064 150267064 T A GIMAP4 Intron 0.15 TCGA-FW-A3R5-06 7 150269471 150269471 C T GIMAP4 Missense_Mutation p.R105C 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 7 150269485 150269485 G A GIMAP4 Silent p.L109L 0.22 TCGA-FW-A3R5-06 7 150269704 150269704 C T GIMAP4 Silent p.F182F 0.31 TCGA-FW-A3R5-06 7 150269763 150269763 G A GIMAP4 Missense_Mutation p.R202K 0.22 tolerated(0.21) possibly_damaging(0.597) TCGA-FW-A3R5-06 7 150269936 150269936 G A GIMAP4 Missense_Mutation p.E260K 0.12 tolerated(0.07) benign(0.064) TCGA-FW-A3R5-06 7 150269982 150269982 G A GIMAP4 Missense_Mutation p.R275K 0.29 tolerated(0.21) benign(0.015) TCGA-FW-A3R5-06 7 150269998 150269998 G A GIMAP4 Silent p.E280E 0.29 TCGA-FW-A3R5-06 7 150325003 150325003 C T GIMAP6 Missense_Mutation p.G228E 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 7 150325004 150325004 C T GIMAP6 Missense_Mutation p.G228R 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-FW-A3R5-06 7 150325055 150325055 G A GIMAP6 Nonsense_Mutation p.Q211* 0.31 TCGA-FW-A3R5-06 7 150325311 150325311 G A GIMAP6 Silent p.A125A 0.33 TCGA-FW-A3R5-06 7 150325338 150325338 G A GIMAP6 Silent p.I116I 0.26 TCGA-FW-A3R5-06 7 150325516 150325516 C T GIMAP6 Missense_Mutation p.G57E 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 150327197 150327197 C T GIMAP6 Missense_Mutation p.E12K 0.28 tolerated(0.2) unknown(0) TCGA-FW-A3R5-06 7 150389971 150389971 G A GIMAP2 Missense_Mutation p.M199I 0.17 deleterious(0.03) possibly_damaging(0.631) TCGA-FW-A3R5-06 7 150416156 150416156 G A GIMAP1 Silent p.A7A 0.30 TCGA-FW-A3R5-06 7 150417157 150417157 C T GIMAP1 Missense_Mutation p.S22F 0.25 tolerated(0.63) possibly_damaging(0.454) TCGA-FW-A3R5-06 7 150417399 150417399 C T GIMAP1 Missense_Mutation p.H103Y 0.23 deleterious(0) benign(0.317) TCGA-FW-A3R5-06 7 150417464 150417464 C T GIMAP1 Silent p.F124F 0.31 TCGA-FW-A3R5-06 7 150417474 150417474 G A GIMAP1 Missense_Mutation p.D128N 0.11 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 7 150417779 150417779 G A GIMAP1 Silent p.Q229Q 0.31 TCGA-FW-A3R5-06 7 150439343 150439343 G A GIMAP5 Missense_Mutation p.G39E 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-FW-A3R5-06 7 150439392 150439392 C T GIMAP5 Silent p.S55S 0.31 TCGA-FW-A3R5-06 7 150439455 150439455 G A GIMAP5 Silent p.R76R 0.37 TCGA-FW-A3R5-06 7 150439638 150439638 C T GIMAP5 Silent p.V137V 0.26 TCGA-FW-A3R5-06 7 150439945 150439945 G A GIMAP5 Missense_Mutation p.E240K 0.23 deleterious(0.01) possibly_damaging(0.806) TCGA-FW-A3R5-06 7 150440092 150440092 C T GIMAP5 Silent p.L289L 0.22 TCGA-FW-A3R5-06 7 150488671 150488671 G A TMEM176B Missense_Mutation p.S254L 0.23 tolerated(0.1) benign(0.142) TCGA-FW-A3R5-06 7 150489234 150489234 G A TMEM176B Silent p.F210F 0.18 TCGA-FW-A3R5-06 7 150490215 150490215 C T TMEM176B Nonsense_Mutation p.W187* 0.14 TCGA-FW-A3R5-06 7 150498668 150498668 C T TMEM176A Silent p.A10A 0.31 TCGA-FW-A3R5-06 7 150499314 150499314 C T TMEM176A Silent p.I62I 0.25 TCGA-FW-A3R5-06 7 150553935 150553935 G A AOC1 Missense_Mutation p.R126Q 0.30 tolerated(0.08) benign(0.004) TCGA-FW-A3R5-06 7 150554705 150554705 C T AOC1 Missense_Mutation p.H383Y 0.24 tolerated(0.71) benign(0.038) TCGA-FW-A3R5-06 7 150647386 150647386 C T KCNH2 Missense_Mutation p.M756I 0.09 deleterious(0.05) benign(0.235) TCGA-FW-A3R5-06 7 150647458 150647458 C T KCNH2 Silent p.L732L 0.32 TCGA-FW-A3R5-06 7 150648860 150648860 G A KCNH2 Missense_Mutation p.R541C 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 150656705 150656705 G A KCNH2 Missense_Mutation p.H143Y 0.28 tolerated(0.08) benign(0.071) TCGA-FW-A3R5-06 7 150693611 150693611 C T NOS3 Silent p.F130F 0.35 TCGA-FW-A3R5-06 7 150696415 150696415 G A NOS3 Missense_Mutation p.R365K 0.21 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 7 150698983 150698983 C T NOS3 Missense_Mutation p.S526F 0.33 deleterious(0.02) probably_damaging(0.914) TCGA-FW-A3R5-06 7 150714259 150714259 C T ATG9B Nonsense_Mutation p.W718* 0.37 TCGA-FW-A3R5-06 7 150715528 150715528 G A ATG9B Silent p.F575F 0.18 TCGA-FW-A3R5-06 7 150715859 150715859 G A ATG9B Silent p.P522P 0.33 TCGA-FW-A3R5-06 7 150721387 150721387 C T ATG9B Missense_Mutation p.G42R 0.31 tolerated_low_confidence(0.11) unknown(0) TCGA-FW-A3R5-06 7 150731895 150731895 C T ABCB8 Silent p.S248S 0.16 TCGA-FW-A3R5-06 7 150739141 150739141 G A ABCB8 Missense_Mutation p.A571T 0.44 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 150768843 150768843 C T SLC4A2 Silent p.V753V 0.27 TCGA-FW-A3R5-06 7 150835336 150835336 C T AGAP3 Silent p.S534S 0.33 TCGA-FW-A3R5-06 7 150839020 150839020 C T AGAP3 Missense_Mutation p.L614F 0.08 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 7 150878191 150878191 G A ASB10 Silent p.L313L 0.11 TCGA-FW-A3R5-06 7 150878387 150878387 C T ASB10 Missense_Mutation p.G248D 0.25 deleterious(0.03) possibly_damaging(0.753) TCGA-FW-A3R5-06 7 150883947 150883947 C T ASB10 Missense_Mutation p.D91N 0.17 tolerated(0.39) benign(0.02) TCGA-FW-A3R5-06 7 150915701 150915701 G A ABCF2 Silent p.I391I 0.12 TCGA-FW-A3R5-06 7 151097249 151097249 C T WDR86 Missense_Mutation p.R81K 0.32 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 7 1513989 1513989 G A INTS1 Missense_Mutation p.P1882S 0.15 deleterious(0.01) benign(0.035) TCGA-FW-A3R5-06 7 1515939 1515939 G A INTS1 Silent p.C1768C 0.25 TCGA-FW-A3R5-06 7 151705022 151705022 C T GALNTL5 Missense_Mutation p.S340L 0.26 deleterious(0) benign(0.059) TCGA-FW-A3R5-06 7 151711762 151711762 C T GALNTL5 Missense_Mutation p.P354S 0.26 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 7 151716987 151716987 G A GALNTL5 3'UTR 0.44 TCGA-FW-A3R5-06 7 151791331 151791331 C T GALNT11 Missense_Mutation p.R7W 0.32 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 7 151835975 151835975 G A KMT2C Missense_Mutation p.S4850L 0.22 probably_damaging(0.999) TCGA-FW-A3R5-06 7 151878029 151878029 G A KMT2C Missense_Mutation p.P2306S 0.30 probably_damaging(0.999) TCGA-FW-A3R5-06 7 151891543 151891543 C T KMT2C Missense_Mutation p.D1497N 0.11 probably_damaging(0.999) TCGA-FW-A3R5-06 7 151927040 151927040 G A KMT2C Nonsense_Mutation p.Q982* 0.05 TCGA-FW-A3R5-06 7 151945118 151945118 G A KMT2C Missense_Mutation p.P801S 0.05 benign(0.008) TCGA-FW-A3R5-06 7 151945426 151945426 G A KMT2C Missense_Mutation p.T698I 0.27 benign(0.017) TCGA-FW-A3R5-06 7 151970819 151970819 G A KMT2C Missense_Mutation p.P328L 0.04 probably_damaging(1) TCGA-FW-A3R5-06 7 152520487 152520487 C T ACTR3B Missense_Mutation p.P249S 0.34 tolerated(0.25) benign(0.035) TCGA-FW-A3R5-06 7 154379625 154379625 G A DPP6 Intron 0.19 TCGA-FW-A3R5-06 7 154667811 154667811 G A DPP6 Splice_Site p.X693_splice 0.16 TCGA-FW-A3R5-06 7 154681001 154681001 G A DPP6 Missense_Mutation p.R775Q 0.24 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 7 154684136 154684136 G A DPP6 Silent p.R848R 0.33 TCGA-FW-A3R5-06 7 154684412 154684412 C T DPP6 3'UTR 0.15 TCGA-FW-A3R5-06 7 154684592 154684592 G A DPP6 3'UTR 0.31 TCGA-FW-A3R5-06 7 154738116 154738116 G A PAXIP1 Silent p.F1051F 0.32 TCGA-FW-A3R5-06 7 154767930 154767930 G A PAXIP1 Missense_Mutation p.R184C 0.17 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 154862651 154862651 C T HTR5A Silent p.T14T 0.27 TCGA-FW-A3R5-06 7 154876048 154876048 C T HTR5A Missense_Mutation p.P309S 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-FW-A3R5-06 7 154876238 154876238 C T HTR5A 3'UTR 0.37 TCGA-FW-A3R5-06 7 155094485 155094485 C T INSIG1 Missense_Mutation p.R245C 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 155567726 155567726 C T RBM33 Silent p.I1168I 0.22 TCGA-FW-A3R5-06 7 15601508 15601508 G A AGMO 5'UTR 0.24 TCGA-FW-A3R5-06 7 156436509 156436509 G A RNF32 5'UTR 0.29 TCGA-FW-A3R5-06 7 156518469 156518469 G A LMBR1 Silent p.I352I 0.32 TCGA-FW-A3R5-06 7 156619309 156619309 G A LMBR1 Silent p.S103S 0.50 TCGA-FW-A3R5-06 7 15666539 15666539 G A MEOX2 Silent p.S174S 0.28 TCGA-FW-A3R5-06 7 156798568 156798568 C T MNX1 Splice_Site p.X285_splice 0.23 TCGA-FW-A3R5-06 7 156956528 156956528 C T UBE3C Missense_Mutation p.R31C 0.27 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 7 156981666 156981666 C T UBE3C Intron 0.44 TCGA-FW-A3R5-06 7 157041160 157041160 C T UBE3C Silent p.A860A 0.11 TCGA-FW-A3R5-06 7 157160088 157160088 C T DNAJB6 Missense_Mutation p.P86L 0.09 deleterious(0.02) benign(0.046) TCGA-FW-A3R5-06 7 157208856 157208856 C T DNAJB6 3'UTR 0.29 TCGA-FW-A3R5-06 7 157414071 157414071 G A PTPRN2 Missense_Mutation p.S776F 0.25 tolerated(0.14) probably_damaging(0.96) TCGA-FW-A3R5-06 7 157475585 157475585 G A PTPRN2 Silent p.D611D 0.36 TCGA-FW-A3R5-06 7 157926512 157926512 C T PTPRN2 Silent p.G471G 0.25 TCGA-FW-A3R5-06 7 157929367 157929367 C T PTPRN2 Missense_Mutation p.D385N 0.09 tolerated(0.17) benign(0.026) TCGA-FW-A3R5-06 7 157931073 157931073 G A PTPRN2 Nonsense_Mutation p.R349* 0.29 TCGA-FW-A3R5-06 7 157931190 157931190 G A PTPRN2 Missense_Mutation p.L310F 0.24 tolerated(0.06) possibly_damaging(0.715) TCGA-FW-A3R5-06 7 157931196 157931196 G A PTPRN2 Missense_Mutation p.H308Y 0.23 deleterious(0.01) benign(0.064) TCGA-FW-A3R5-06 7 157959797 157959797 G A PTPRN2 Missense_Mutation p.L246F 0.15 deleterious(0) possibly_damaging(0.889) TCGA-FW-A3R5-06 7 157959834 157959834 C T PTPRN2 Silent p.V233V 0.32 TCGA-FW-A3R5-06 7 157985168 157985168 C T PTPRN2 Missense_Mutation p.G134S 0.19 tolerated(0.11) benign(0.053) TCGA-FW-A3R5-06 7 158334200 158334200 C T PTPRN2 Intron 0.24 TCGA-FW-A3R5-06 7 158472759 158472759 G A NCAPG2 Nonsense_Mutation p.R347* 0.10 TCGA-FW-A3R5-06 7 158528282 158528282 G A ESYT2 Missense_Mutation p.S833L 0.31 deleterious(0.04) probably_damaging(0.946) TCGA-FW-A3R5-06 7 158536344 158536344 G A ESYT2 Missense_Mutation p.S584F 0.23 deleterious(0) benign(0.198) TCGA-FW-A3R5-06 7 158663943 158663943 C T WDR60 Silent p.P60P 0.43 TCGA-FW-A3R5-06 7 1587388 1587388 C T TMEM184A Silent p.E334E 0.21 TCGA-FW-A3R5-06 7 16298032 16298032 G A ISPD Missense_Mutation p.P368S 0.20 deleterious(0.05) benign(0.356) TCGA-FW-A3R5-06 7 16714053 16714053 C T BZW2 Silent p.F25F 0.26 TCGA-FW-A3R5-06 7 16817503 16817503 C T TSPAN13 Silent p.F131F 0.15 TCGA-FW-A3R5-06 7 16839434 16839434 C T AGR2 Silent p.K88K 0.09 TCGA-FW-A3R5-06 7 18067202 18067202 C T PRPS1L1 Missense_Mutation p.M68I 0.26 deleterious(0.01) benign(0.311) TCGA-FW-A3R5-06 7 18067213 18067213 C T PRPS1L1 Missense_Mutation p.D65N 0.29 tolerated(0.09) possibly_damaging(0.49) TCGA-FW-A3R5-06 7 18067438 18067438 G A PRPS1L1 5'UTR 0.15 TCGA-FW-A3R5-06 7 18067464 18067464 G A PRPS1L1 5'UTR 0.14 TCGA-FW-A3R5-06 7 18624985 18624985 C T HDAC9 Missense_Mutation p.P35L 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3R5-06 7 18674337 18674337 C T HDAC9 Missense_Mutation p.S295L 0.38 tolerated(0.19) benign(0.008) TCGA-FW-A3R5-06 7 18705913 18705913 C T HDAC9 Silent p.D515D 0.21 TCGA-FW-A3R5-06 7 18788653 18788653 G A HDAC9 Silent p.L645L 0.32 TCGA-FW-A3R5-06 7 18788727 18788727 G A HDAC9 Missense_Mutation p.R670Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 7 18869133 18869133 G A HDAC9 Missense_Mutation p.D810N 0.36 deleterious(0) benign(0.298) TCGA-FW-A3R5-06 7 19184938 19184938 G A FERD3L Silent p.F16F 0.24 TCGA-FW-A3R5-06 7 19185000 19185000 C T FERD3L 5'UTR 0.29 TCGA-FW-A3R5-06 7 19765192 19765192 C T TMEM196 Missense_Mutation p.R135K 0.34 tolerated(0.24) unknown(0) TCGA-FW-A3R5-06 7 20180764 20180764 G A MACC1 Silent p.A788A 0.27 TCGA-FW-A3R5-06 7 20198126 20198126 C T MACC1 Missense_Mutation p.E620K 0.24 tolerated(0.51) benign(0.055) TCGA-FW-A3R5-06 7 20198585 20198585 G A MACC1 Missense_Mutation p.H467Y 0.26 deleterious(0.05) benign(0.008) TCGA-FW-A3R5-06 7 20198651 20198651 C T MACC1 Missense_Mutation p.E445K 0.19 tolerated(0.12) benign(0.009) TCGA-FW-A3R5-06 7 20406640 20406640 C T ITGB8 Silent p.F73F 0.30 TCGA-FW-A3R5-06 7 20434538 20434538 C T ITGB8 Missense_Mutation p.P359L 0.10 deleterious(0) probably_damaging(0.928) TCGA-FW-A3R5-06 7 20668326 20668326 G A ABCB5 Missense_Mutation p.G42R 0.15 tolerated(0.69) benign(0.007) TCGA-FW-A3R5-06 7 20682893 20682893 G A ABCB5 Missense_Mutation p.R134Q 0.36 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.19 tolerated(0.64) benign(0.002) TCGA-FW-A3R5-06 7 20698721 20698721 C T ABCB5 Intron 0.26 TCGA-FW-A3R5-06 7 20698744 20698744 C T ABCB5 Intron 0.31 TCGA-FW-A3R5-06 7 20698775 20698775 C T ABCB5 Intron 0.28 TCGA-FW-A3R5-06 7 20698879 20698879 G A ABCB5 Intron 0.33 TCGA-FW-A3R5-06 7 20725319 20725319 G A ABCB5 Missense_Mutation p.D624N 0.25 tolerated(0.43) benign(0.062) TCGA-FW-A3R5-06 7 21469372 21469372 C T SP4 Nonsense_Mutation p.Q197* 0.28 TCGA-FW-A3R5-06 7 21628917 21628917 G A DNAH11 Missense_Mutation p.E689K 0.12 benign(0.007) TCGA-FW-A3R5-06 7 21631030 21631030 G A DNAH11 Silent p.V834V 0.27 TCGA-FW-A3R5-06 7 21631159 21631159 C T DNAH11 Silent p.I877I 0.31 TCGA-FW-A3R5-06 7 21641163 21641163 C T DNAH11 Missense_Mutation p.P1192L 0.12 probably_damaging(0.993) TCGA-FW-A3R5-06 7 21641177 21641177 A T DNAH11 Missense_Mutation p.I1197F 0.30 probably_damaging(0.953) TCGA-FW-A3R5-06 7 21721262 21721262 C T DNAH11 Silent p.A1814A 0.26 TCGA-FW-A3R5-06 7 21730468 21730468 G A DNAH11 Missense_Mutation p.E2011K 0.13 probably_damaging(0.998) TCGA-FW-A3R5-06 7 21742337 21742337 G A DNAH11 Missense_Mutation p.D2071N 0.28 probably_damaging(1) TCGA-FW-A3R5-06 7 21742392 21742392 G A DNAH11 Missense_Mutation p.R2089Q 0.31 probably_damaging(1) TCGA-FW-A3R5-06 7 21744103 21744103 G A DNAH11 Missense_Mutation p.D2116N 0.36 probably_damaging(1) TCGA-FW-A3R5-06 7 21750215 21750215 G A DNAH11 Missense_Mutation p.R2250Q 0.17 probably_damaging(0.994) TCGA-FW-A3R5-06 7 21789343 21789343 C T DNAH11 Silent p.P2914P 0.16 TCGA-FW-A3R5-06 7 21789388 21789388 C T DNAH11 Silent p.F2929F 0.31 TCGA-FW-A3R5-06 7 21805064 21805064 C T DNAH11 Missense_Mutation p.P2994S 0.30 probably_damaging(0.99) TCGA-FW-A3R5-06 7 21840889 21840889 G T DNAH11 Missense_Mutation p.E3394D 0.10 possibly_damaging(0.64) TCGA-FW-A3R5-06 7 21856193 21856193 G A DNAH11 Missense_Mutation p.E3488K 0.36 possibly_damaging(0.908) TCGA-FW-A3R5-06 7 21882208 21882208 C T DNAH11 Missense_Mutation p.R3587C 0.25 probably_damaging(0.977) TCGA-FW-A3R5-06 7 21901519 21901519 G A DNAH11 Missense_Mutation p.E3758K 0.17 benign(0.419) TCGA-FW-A3R5-06 7 22202044 22202044 C T RAPGEF5 Missense_Mutation p.E314K 0.24 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 7 22202047 22202047 G A RAPGEF5 Missense_Mutation p.P313S 0.24 tolerated(0.11) benign(0) TCGA-FW-A3R5-06 7 22348106 22348106 G A RAPGEF5 Nonsense_Mutation p.Q25* 0.36 TCGA-FW-A3R5-06 7 22533207 22533207 G A STEAP1B Silent p.I111I 0.16 TCGA-FW-A3R5-06 7 22767223 22767223 C T IL6 Silent p.I60I 0.29 TCGA-FW-A3R5-06 7 2297376 2297376 G A SNX8 Silent p.S326S 0.19 TCGA-FW-A3R5-06 7 2297430 2297430 C T SNX8 Silent p.Q308Q 0.28 TCGA-FW-A3R5-06 7 22999935 22999935 G A FAM126A Nonsense_Mutation p.R311* 0.15 TCGA-FW-A3R5-06 7 2302930 2302930 G A SNX8 Silent p.L284L 0.21 TCGA-FW-A3R5-06 7 2317866 2317866 G A SNX8 Missense_Mutation p.P57S 0.30 tolerated(0.08) benign(0.341) TCGA-FW-A3R5-06 7 23571542 23571542 G A TRA2A 5'UTR 0.25 TCGA-FW-A3R5-06 7 23749850 23749850 C T STK31 5'UTR 0.28 TCGA-FW-A3R5-06 7 23750009 23750009 C T STK31 Intron 0.27 TCGA-FW-A3R5-06 7 23775187 23775187 G A STK31 Missense_Mutation p.E172K 0.28 deleterious(0.03) possibly_damaging(0.582) TCGA-FW-A3R5-06 7 23776524 23776524 G A STK31 Missense_Mutation p.E282K 0.25 deleterious(0.02) benign(0.02) TCGA-FW-A3R5-06 7 23792369 23792369 C T STK31 Missense_Mutation p.H351Y 0.21 tolerated(0.22) benign(0.002) TCGA-FW-A3R5-06 7 23808660 23808660 G A STK31 Missense_Mutation p.G488E 0.26 tolerated(0.96) benign(0.027) TCGA-FW-A3R5-06 7 23809324 23809324 C T STK31 Silent p.I554I 0.27 TCGA-FW-A3R5-06 7 23810624 23810624 G A STK31 Missense_Mutation p.D572N 0.30 deleterious(0.01) benign(0.018) TCGA-FW-A3R5-06 7 23811825 23811825 C T STK31 Silent p.S631S 0.26 TCGA-FW-A3R5-06 7 23826227 23826227 C T STK31 Missense_Mutation p.P792L 0.24 tolerated(0.06) possibly_damaging(0.843) TCGA-FW-A3R5-06 7 23827677 23827677 C T STK31 Missense_Mutation p.H856Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 23871841 23871841 C T STK31 Silent p.F972F 0.26 TCGA-FW-A3R5-06 7 2402289 2402289 C T EIF3B Silent p.F234F 0.29 TCGA-FW-A3R5-06 7 24663358 24663358 C T MPP6 Silent p.F24F 0.27 TCGA-FW-A3R5-06 7 24681389 24681389 G T MPP6 Nonsense_Mutation p.E58* 0.28 TCGA-FW-A3R5-06 7 24689299 24689299 G A MPP6 Missense_Mutation p.M113I 0.22 tolerated(0.45) benign(0) TCGA-FW-A3R5-06 7 24689314 24689314 C T MPP6 Silent p.I118I 0.25 TCGA-FW-A3R5-06 7 2472296 2472296 C T CHST12 Missense_Mutation p.R8W 0.31 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 7 2473276 2473276 C T CHST12 Silent p.I334I 0.12 TCGA-FW-A3R5-06 7 24874210 24874210 C T OSBPL3 Silent p.V547V 0.29 TCGA-FW-A3R5-06 7 2559870 2559870 C T LFNG Silent p.F125F 0.23 TCGA-FW-A3R5-06 7 26224916 26224916 G A NFE2L3 Missense_Mutation p.R533K 0.29 tolerated(0.48) benign(0.006) TCGA-FW-A3R5-06 7 26778453 26778453 G A SKAP2 Missense_Mutation p.L144F 0.34 deleterious(0.02) possibly_damaging(0.457) TCGA-FW-A3R5-06 7 27134413 27134413 C T HOXA1 Silent p.G218G 0.37 TCGA-FW-A3R5-06 7 27135420 27135420 G A HOXA1 Nonsense_Mutation p.Q38* 0.29 TCGA-FW-A3R5-06 7 27140196 27140196 G A HOXA2 3'UTR 0.55 TCGA-FW-A3R5-06 7 27148074 27148074 T C HOXA3 Silent p.P264P 0.27 TCGA-FW-A3R5-06 7 27182802 27182802 C T HOXA5 Missense_Mutation p.G142E 0.29 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 7 27183048 27183048 C T HOXA5 Missense_Mutation p.G60D 0.27 tolerated(0.14) benign(0.003) TCGA-FW-A3R5-06 7 27185156 27185156 C T HOXA6 3'UTR 0.29 TCGA-FW-A3R5-06 7 27186867 27186867 C T HOXA6 Intron 0.28 TCGA-FW-A3R5-06 7 27187241 27187241 C T HOXA6 Missense_Mutation p.G43E 0.30 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 7 27204563 27204563 C T HOXA9 Missense_Mutation p.E172K 0.23 tolerated(0.5) benign(0.253) TCGA-FW-A3R5-06 7 27211412 27211412 G A HOXA10 3'UTR 0.22 TCGA-FW-A3R5-06 7 27238925 27238925 G A HOXA13 Missense_Mutation p.L258F 0.28 tolerated(0.05) possibly_damaging(0.858) TCGA-FW-A3R5-06 7 27284711 27284711 G A EVX1 Missense_Mutation p.E158K 0.34 tolerated(0.71) benign(0.049) TCGA-FW-A3R5-06 7 2740316 2740316 C T AMZ1 Silent p.F77F 0.19 TCGA-FW-A3R5-06 7 2740325 2740325 C T AMZ1 Silent p.F80F 0.29 TCGA-FW-A3R5-06 7 2752230 2752230 G A AMZ1 Silent p.K405K 0.28 TCGA-FW-A3R5-06 7 27582693 27582693 G A HIBADH Missense_Mutation p.L171F 0.36 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 27689131 27689131 G A HIBADH Silent p.F71F 0.33 TCGA-FW-A3R5-06 7 2770902 2770902 G A GNA12 Silent p.A353A 0.28 TCGA-FW-A3R5-06 7 27788253 27788253 C T TAX1BP1 Missense_Mutation p.T37I 0.18 tolerated(0.09) probably_damaging(0.998) TCGA-FW-A3R5-06 7 28534587 28534587 C T CREB5 Missense_Mutation p.P47S 0.24 tolerated(0.55) benign(0.093) TCGA-FW-A3R5-06 7 28547306 28547306 C T CREB5 Missense_Mutation p.S81F 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-FW-A3R5-06 7 28996398 28996398 G A AC005013.5 5'Flank 0.21 TCGA-FW-A3R5-06 7 28996799 28996799 C T AC005013.5 5'Flank 0.16 TCGA-FW-A3R5-06 7 28996800 28996800 C T AC005013.5 5'Flank 0.16 TCGA-FW-A3R5-06 7 28997133 28997133 G A AC005013.5 5'Flank 0.24 TCGA-FW-A3R5-06 7 28997319 28997319 C T AC005013.5 RNA 0.27 TCGA-FW-A3R5-06 7 29132281 29132281 C T CPVL Missense_Mutation p.G167E 0.16 deleterious(0) probably_damaging(0.975) TCGA-FW-A3R5-06 7 29160613 29160613 C T CPVL Missense_Mutation p.G22E 0.34 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 2946159 2946159 G A CARD11 3'UTR 0.24 TCGA-FW-A3R5-06 7 2946452 2946452 C T CARD11 Silent p.T1095T 0.40 TCGA-FW-A3R5-06 7 2959084 2959084 C T CARD11 Missense_Mutation p.R811K 0.36 tolerated(0.26) benign(0.004) TCGA-FW-A3R5-06 7 2963962 2963962 G A CARD11 Silent p.S615S 0.34 TCGA-FW-A3R5-06 7 2972186 2972186 C T CARD11 Missense_Mutation p.R518Q 0.21 tolerated(0.18) benign(0.001) TCGA-FW-A3R5-06 7 2979523 2979523 C T CARD11 Missense_Mutation p.E242K 0.19 deleterious(0) possibly_damaging(0.793) TCGA-FW-A3R5-06 7 29924036 29924036 C T WIPF3 Missense_Mutation p.P309L 0.42 tolerated_low_confidence(0.06) unknown(0) TCGA-FW-A3R5-06 7 29924037 29924037 C T WIPF3 Silent p.P309P 0.46 TCGA-FW-A3R5-06 7 29976195 29976195 G A SCRN1 Silent p.F314F 0.19 TCGA-FW-A3R5-06 7 29980386 29980386 C T SCRN1 Silent p.E237E 0.26 TCGA-FW-A3R5-06 7 30671904 30671904 G A GARS Missense_Mutation p.D649N 0.26 tolerated(0.06) probably_damaging(0.935) TCGA-FW-A3R5-06 7 30795320 30795320 C T INMT Silent p.A215A 0.13 TCGA-FW-A3R5-06 7 30830929 30830929 C T FAM188B Missense_Mutation p.S271F 0.33 tolerated(0.12) benign(0.352) TCGA-FW-A3R5-06 7 30898886 30898886 C T FAM188B Missense_Mutation p.P564L 0.13 deleterious(0) probably_damaging(0.922) TCGA-FW-A3R5-06 7 30961695 30961695 G A AQP1 Silent p.V133V 0.26 TCGA-FW-A3R5-06 7 30961728 30961728 C T AQP1 Silent p.I144I 0.18 TCGA-FW-A3R5-06 7 30962216 30962216 C T AQP1 Missense_Mutation p.S196F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 30963129 30963129 C T AQP1 Missense_Mutation p.A232V 0.43 tolerated(0.22) benign(0.329) TCGA-FW-A3R5-06 7 30963132 30963132 C T AQP1 Missense_Mutation p.P233L 0.42 deleterious(0) possibly_damaging(0.87) TCGA-FW-A3R5-06 7 30963185 30963185 G A AQP1 Missense_Mutation p.E251K 0.24 tolerated(0.24) benign(0.214) TCGA-FW-A3R5-06 7 30963529 30963529 C T AQP1 3'UTR 0.18 TCGA-FW-A3R5-06 7 31008470 31008470 G A GHRHR Missense_Mutation p.E27K 0.19 deleterious(0) possibly_damaging(0.682) TCGA-FW-A3R5-06 7 31013635 31013635 C T GHRHR Silent p.F211F 0.19 TCGA-FW-A3R5-06 7 31124949 31124949 C T ADCYAP1R1 Silent p.F187F 0.24 TCGA-FW-A3R5-06 7 31127291 31127291 C T ADCYAP1R1 Missense_Mutation p.P312L 0.25 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 7 31146148 31146148 G A ADCYAP1R1 Silent p.K447K 0.32 TCGA-FW-A3R5-06 7 31146307 31146307 C T ADCYAP1R1 3'UTR 0.38 TCGA-FW-A3R5-06 7 31378278 31378278 G A NEUROD6 Missense_Mutation p.S202L 0.18 deleterious(0.04) benign(0.011) TCGA-FW-A3R5-06 7 31735138 31735138 G A PPP1R17 Silent p.K46K 0.23 TCGA-FW-A3R5-06 7 31793040 31793040 C T PDE1C Missense_Mutation p.M756I 0.26 deleterious_low_confidence(0.05) benign(0.023) TCGA-FW-A3R5-06 7 31829719 31829719 G A PDE1C Intron 0.14 TCGA-FW-A3R5-06 7 31864570 31864570 G A PDE1C Silent p.F499F 0.34 TCGA-FW-A3R5-06 7 31864577 31864577 G A PDE1C Missense_Mutation p.P497L 0.11 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 31876800 31876800 G A PDE1C Silent p.F459F 0.31 TCGA-FW-A3R5-06 7 31876828 31876828 C T PDE1C Nonsense_Mutation p.W450* 0.15 TCGA-FW-A3R5-06 7 31918627 31918627 G A PDE1C Missense_Mutation p.A196V 0.15 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 31920407 31920407 C T PDE1C Silent p.L125L 0.31 TCGA-FW-A3R5-06 7 32109934 32109934 G A PDE1C Intron 0.11 TCGA-FW-A3R5-06 7 32110061 32110061 C T PDE1C Intron 0.33 TCGA-FW-A3R5-06 7 33195256 33195256 C T BBS9 Silent p.T90T 0.21 TCGA-FW-A3R5-06 7 33313498 33313498 C T BBS9 Nonsense_Mutation p.Q316* 0.32 TCGA-FW-A3R5-06 7 34006106 34006106 G A BMPER Missense_Mutation p.G112E 0.20 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 7 34118537 34118537 C T BMPER Nonsense_Mutation p.Q383* 0.27 TCGA-FW-A3R5-06 7 34125657 34125657 G A BMPER Nonsense_Mutation p.W566* 0.28 TCGA-FW-A3R5-06 7 34698120 34698120 T A NPSR1 Missense_Mutation p.F32L 0.22 tolerated(0.12) benign(0.106) TCGA-FW-A3R5-06 7 34851459 34851459 G A NPSR1 Missense_Mutation p.M154I 0.28 deleterious(0.01) possibly_damaging(0.796) TCGA-FW-A3R5-06 7 34888123 34888123 C T NPSR1 Silent p.F291F 0.27 TCGA-FW-A3R5-06 7 34888154 34888154 C A NPSR1 Missense_Mutation p.L302I 0.08 tolerated(0.73) possibly_damaging(0.778) TCGA-FW-A3R5-06 7 34888231 34888231 C T NPSR1 Silent p.P327P 0.22 TCGA-FW-A3R5-06 7 34889177 34889177 G A NPSR1 Intron 0.27 TCGA-FW-A3R5-06 7 35131484 35131484 G A DPY19L2P1 RNA 0.28 TCGA-FW-A3R5-06 7 35144355 35144355 C T DPY19L2P1 RNA 0.19 TCGA-FW-A3R5-06 7 35242161 35242161 T A TBX20 Missense_Mutation p.S409C 0.19 deleterious_low_confidence(0) benign(0.241) TCGA-FW-A3R5-06 7 35242163 35242163 C T TBX20 Missense_Mutation p.G408E 0.18 deleterious_low_confidence(0.01) benign(0.081) TCGA-FW-A3R5-06 7 35284668 35284668 G A TBX20 Missense_Mutation p.L183F 0.23 tolerated(0.1) probably_damaging(0.924) TCGA-FW-A3R5-06 7 35293219 35293219 C A TBX20 Missense_Mutation p.A5S 0.27 tolerated_low_confidence(0.63) benign(0.001) TCGA-FW-A3R5-06 7 36459857 36459857 G A ANLN Missense_Mutation p.R650K 0.25 deleterious(0.03) probably_damaging(0.965) TCGA-FW-A3R5-06 7 36552954 36552954 C T AOAH Nonsense_Mutation p.W544* 0.29 TCGA-FW-A3R5-06 7 36580097 36580097 C T AOAH Silent p.G378G 0.26 TCGA-FW-A3R5-06 7 3658723 3658723 C T SDK1 Missense_Mutation p.P104S 0.25 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 7 3658762 3658762 C T SDK1 Silent p.L117L 0.33 TCGA-FW-A3R5-06 7 3658802 3658802 G A SDK1 Missense_Mutation p.G130E 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 3658803 3658803 G A SDK1 Silent p.G130G 0.14 TCGA-FW-A3R5-06 7 36634028 36634028 G A AOAH Silent p.F285F 0.37 TCGA-FW-A3R5-06 7 3681616 3681616 C T SDK1 Nonsense_Mutation p.Q198* 0.14 TCGA-FW-A3R5-06 7 36895318 36895318 C T ELMO1 Silent p.G674G 0.23 TCGA-FW-A3R5-06 7 37251039 37251039 C T ELMO1 Silent p.E346E 0.24 TCGA-FW-A3R5-06 7 37256298 37256298 C T ELMO1 Silent p.E261E 0.30 TCGA-FW-A3R5-06 7 37262227 37262227 C T ELMO1 Missense_Mutation p.R258K 0.18 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 7 37262241 37262241 C T ELMO1 Silent p.K253K 0.28 TCGA-FW-A3R5-06 7 37354527 37354527 C T ELMO1 Splice_Site p.X40_splice 0.18 TCGA-FW-A3R5-06 7 37780368 37780368 G A GPR141 Missense_Mutation p.E125K 0.19 tolerated(0.06) possibly_damaging(0.583) TCGA-FW-A3R5-06 7 37903043 37903043 G A NME8 Missense_Mutation p.E145K 0.18 tolerated(0.19) benign(0.049) TCGA-FW-A3R5-06 7 37916554 37916554 G A NME8 Missense_Mutation p.M313I 0.19 tolerated(0.41) benign(0.001) TCGA-FW-A3R5-06 7 37936686 37936686 G A NME8 Missense_Mutation p.E587K 0.24 tolerated_low_confidence(0.19) benign(0.018) TCGA-FW-A3R5-06 7 38247193 38247193 C T STARD3NL Missense_Mutation p.P30S 0.25 tolerated(0.91) benign(0.004) TCGA-FW-A3R5-06 7 38289092 38289092 C T TRGC2 Missense_Mutation p.G28E 0.29 tolerated(0.08) probably_damaging(1) TCGA-FW-A3R5-06 7 38295943 38295943 G A TRGJP2 Missense_Mutation p.S19L 0.41 unknown(0) TCGA-FW-A3R5-06 7 38370174 38370174 C T TRGV8 Missense_Mutation p.D42N 0.33 deleterious(0.04) possibly_damaging(0.84) TCGA-FW-A3R5-06 7 38370508 38370508 G A TRGV8 5'UTR 0.25 TCGA-FW-A3R5-06 7 38389232 38389232 C T TRGV5 Silent p.T26T 0.27 TCGA-FW-A3R5-06 7 38393601 38393601 T A TRGV4 Missense_Mutation p.E23D 0.28 tolerated(0.13) benign(0.061) TCGA-FW-A3R5-06 7 38398395 38398395 C T TRGV3 Silent p.G24G 0.15 TCGA-FW-A3R5-06 7 38398396 38398396 C T TRGV3 Missense_Mutation p.G24E 0.15 tolerated(0.39) possibly_damaging(0.723) TCGA-FW-A3R5-06 7 38424350 38424350 G A AMPH 3'UTR 0.33 TCGA-FW-A3R5-06 7 38424437 38424437 G A AMPH Silent p.F690F 0.22 TCGA-FW-A3R5-06 7 38433628 38433628 C T AMPH Missense_Mutation p.E529K 0.17 tolerated(0.05) benign(0.14) TCGA-FW-A3R5-06 7 38516566 38516566 G A AMPH Missense_Mutation p.R134C 0.24 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 38574572 38574572 C T AMPH Missense_Mutation p.E37K 0.08 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 38766521 38766521 G A VPS41 Silent p.P824P 0.18 TCGA-FW-A3R5-06 7 38768163 38768163 G A VPS41 Missense_Mutation p.L795F 0.18 tolerated(0.2) benign(0.128) TCGA-FW-A3R5-06 7 39046462 39046462 C T POU6F2 Missense_Mutation p.L5F 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-FW-A3R5-06 7 39247056 39247056 C T POU6F2 Silent p.A116A 0.28 TCGA-FW-A3R5-06 7 39247057 39247057 C T POU6F2 Missense_Mutation p.L117F 0.28 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-FW-A3R5-06 7 39504152 39504152 G A POU6F2 Missense_Mutation p.R648Q 0.15 deleterious(0) unknown(0) TCGA-FW-A3R5-06 7 39504228 39504228 G A POU6F2 Silent p.E673E 0.40 TCGA-FW-A3R5-06 7 39610212 39610212 C T YAE1D1 Silent p.L79L 0.22 TCGA-FW-A3R5-06 7 39611996 39611996 C T YAE1D1 Silent p.I124I 0.19 TCGA-FW-A3R5-06 7 40277264 40277264 G A SUGCT Missense_Mutation p.R179Q 0.31 deleterious(0.03) probably_damaging(0.964) TCGA-FW-A3R5-06 7 4150369 4150369 G A SDK1 Silent p.L1133L 0.35 TCGA-FW-A3R5-06 7 4153693 4153693 G A SDK1 Missense_Mutation p.G1204R 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 4153782 4153782 G A SDK1 Silent p.L1233L 0.19 TCGA-FW-A3R5-06 7 4153809 4153809 G A SDK1 Silent p.L1242L 0.31 TCGA-FW-A3R5-06 7 41729188 41729188 C T INHBA 3'UTR 0.11 TCGA-FW-A3R5-06 7 41729268 41729268 C T INHBA Missense_Mutation p.E421K 0.31 deleterious(0) probably_damaging(0.957) TCGA-FW-A3R5-06 7 41729504 41729504 G A INHBA Missense_Mutation p.P342L 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 41739911 41739911 G A INHBA Missense_Mutation p.S21F 0.33 tolerated(0.06) possibly_damaging(0.48) TCGA-FW-A3R5-06 7 4201420 4201420 C T SDK1 Missense_Mutation p.P1578S 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 7 4201467 4201467 C T SDK1 Silent p.S1593S 0.27 TCGA-FW-A3R5-06 7 4249749 4249749 C T SDK1 Silent p.L1832L 0.14 TCGA-FW-A3R5-06 7 4277346 4277346 C T SDK1 Silent p.I2020I 0.25 TCGA-FW-A3R5-06 7 4281431 4281431 G A SDK1 Missense_Mutation p.G2046E 0.21 tolerated(0.13) benign(0.066) TCGA-FW-A3R5-06 7 4281435 4281435 C T SDK1 Silent p.I2047I 0.24 TCGA-FW-A3R5-06 7 4281527 4281527 C T SDK1 Missense_Mutation p.S2078F 0.19 tolerated(0.05) benign(0.14) TCGA-FW-A3R5-06 7 43351577 43351577 C T HECW1 Silent p.L81L 0.21 TCGA-FW-A3R5-06 7 43351612 43351612 C T HECW1 Missense_Mutation p.S93F 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 7 43483944 43483944 G A HECW1 Nonsense_Mutation p.W391* 0.23 TCGA-FW-A3R5-06 7 43547729 43547729 G A HECW1 Missense_Mutation p.G1289S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 7 43594307 43594307 G A HECW1 Missense_Mutation p.E1543K 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 43594369 43594369 G A HECW1 Silent p.G1563G 0.14 TCGA-FW-A3R5-06 7 43846778 43846778 C T BLVRA Silent p.L279L 0.29 TCGA-FW-A3R5-06 7 43906397 43906397 G A MRPS24 Silent p.L135L 0.34 TCGA-FW-A3R5-06 7 43918417 43918417 G A URGCP Silent p.L215L 0.26 TCGA-FW-A3R5-06 7 43921516 43921516 G A URGCP Silent p.F51F 0.31 TCGA-FW-A3R5-06 7 44044651 44044651 G A SPDYE1 Intron 0.28 TCGA-FW-A3R5-06 7 44146425 44146425 C T AEBP1 Silent p.T178T 0.26 TCGA-FW-A3R5-06 7 44151644 44151644 C T AEBP1 Nonsense_Mutation p.Q678* 0.39 TCGA-FW-A3R5-06 7 44156455 44156455 G A POLD2 Silent p.L247L 0.26 TCGA-FW-A3R5-06 7 44178607 44178607 G A MYL7 Silent p.F147F 0.27 TCGA-FW-A3R5-06 7 44189392 44189392 C T GCK Missense_Mutation p.E217K 0.33 tolerated(0.19) probably_damaging(0.997) TCGA-FW-A3R5-06 7 44228526 44228526 C T GCK Silent p.E9E 0.30 TCGA-FW-A3R5-06 7 44553214 44553214 C T NPC1L1 Silent p.Q1304Q 0.33 TCGA-FW-A3R5-06 7 44555716 44555716 C T NPC1L1 Silent p.R1227R 0.33 TCGA-FW-A3R5-06 7 44560392 44560392 C T NPC1L1 Silent p.V1036V 0.22 TCGA-FW-A3R5-06 7 44560656 44560656 C T NPC1L1 Silent p.V1005V 0.22 TCGA-FW-A3R5-06 7 44575962 44575962 C T NPC1L1 Missense_Mutation p.D583N 0.26 tolerated(0.06) possibly_damaging(0.533) TCGA-FW-A3R5-06 7 44579081 44579081 G A NPC1L1 Silent p.F305F 0.34 TCGA-FW-A3R5-06 7 44579376 44579376 C T NPC1L1 Missense_Mutation p.G207E 0.27 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 44579753 44579753 G A NPC1L1 Silent p.L81L 0.23 TCGA-FW-A3R5-06 7 44687287 44687287 C T OGDH Missense_Mutation p.P149L 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 44797655 44797655 C T ZMIZ2 Missense_Mutation p.P254L 0.26 deleterious(0.04) benign(0.185) TCGA-FW-A3R5-06 7 44800029 44800029 C T ZMIZ2 Silent p.T359T 0.09 TCGA-FW-A3R5-06 7 44804027 44804027 C T ZMIZ2 Silent p.L624L 0.24 TCGA-FW-A3R5-06 7 44839450 44839450 C T PPIA Silent p.F113F 0.33 TCGA-FW-A3R5-06 7 45002318 45002318 G A MYO1G 3'UTR 0.28 TCGA-FW-A3R5-06 7 45005740 45005740 G A MYO1G Missense_Mutation p.R697W 0.20 deleterious(0) benign(0.386) TCGA-FW-A3R5-06 7 45009349 45009349 G A MYO1G Silent p.T486T 0.29 TCGA-FW-A3R5-06 7 45009750 45009750 G A MYO1G Silent p.F407F 0.30 TCGA-FW-A3R5-06 7 45016647 45016647 G A MYO1G Missense_Mutation p.T40I 0.44 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 45108060 45108060 C T CCM2 Missense_Mutation p.S185F 0.31 tolerated(0.05) probably_damaging(0.974) TCGA-FW-A3R5-06 7 45223062 45223062 C T RAMP3 3'UTR 0.27 TCGA-FW-A3R5-06 7 45223068 45223068 G A RAMP3 3'UTR 0.29 TCGA-FW-A3R5-06 7 45223097 45223097 C T RAMP3 3'UTR 0.24 TCGA-FW-A3R5-06 7 45725690 45725690 C T ADCY1 Silent p.L735L 0.36 TCGA-FW-A3R5-06 7 45744123 45744123 G A ADCY1 Missense_Mutation p.E909K 0.26 tolerated(0.17) benign(0.217) TCGA-FW-A3R5-06 7 47332457 47332457 G A TNS3 Silent p.A1273A 0.21 TCGA-FW-A3R5-06 7 47344548 47344548 G A TNS3 Missense_Mutation p.P902S 0.25 tolerated(0.14) benign(0.059) TCGA-FW-A3R5-06 7 47463708 47463708 G A TNS3 Missense_Mutation p.S155F 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 47814588 47814588 C T PKD1L1 3'UTR 0.35 TCGA-FW-A3R5-06 7 47842882 47842882 G A PKD1L1 Missense_Mutation p.P2630S 0.40 deleterious(0.02) possibly_damaging(0.58) TCGA-FW-A3R5-06 7 47847945 47847945 G A PKD1L1 Missense_Mutation p.S2576F 0.25 deleterious(0.02) possibly_damaging(0.892) TCGA-FW-A3R5-06 7 47860722 47860722 G A PKD1L1 Missense_Mutation p.S2306F 0.28 deleterious(0) benign(0.073) TCGA-FW-A3R5-06 7 47876552 47876552 G A PKD1L1 Silent p.L1970L 0.23 TCGA-FW-A3R5-06 7 47882631 47882631 G A PKD1L1 Silent p.L1792L 0.12 TCGA-FW-A3R5-06 7 47882633 47882633 G A PKD1L1 Missense_Mutation p.S1791F 0.15 deleterious(0.03) benign(0.139) TCGA-FW-A3R5-06 7 47894564 47894564 G A PKD1L1 Missense_Mutation p.S1592F 0.25 deleterious(0) probably_damaging(0.948) TCGA-FW-A3R5-06 7 47921602 47921602 G A PKD1L1 Missense_Mutation p.P1116L 0.26 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 7 47925324 47925324 C T PKD1L1 Silent p.E1055E 0.27 TCGA-FW-A3R5-06 7 4798696 4798696 C T FOXK1 Missense_Mutation p.S420L 0.30 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 48269424 48269424 C T ABCA13 Missense_Mutation p.S212F 0.27 benign(0.063) TCGA-FW-A3R5-06 7 48288033 48288033 C T ABCA13 Silent p.V619V 0.35 TCGA-FW-A3R5-06 7 48312163 48312163 C T ABCA13 Missense_Mutation p.S967L 0.34 benign(0.091) TCGA-FW-A3R5-06 7 48312324 48312324 C T ABCA13 Missense_Mutation p.L1021F 0.32 probably_damaging(0.996) TCGA-FW-A3R5-06 7 48312489 48312489 C T ABCA13 Missense_Mutation p.R1076C 0.32 probably_damaging(0.964) TCGA-FW-A3R5-06 7 48318309 48318309 G A ABCA13 Silent p.L2506L 0.10 TCGA-FW-A3R5-06 7 48318381 48318381 G A ABCA13 Silent p.K2530K 0.29 TCGA-FW-A3R5-06 7 48338023 48338023 C T ABCA13 Missense_Mutation p.S3087F 0.40 benign(0.092) TCGA-FW-A3R5-06 7 48349722 48349722 G A ABCA13 Missense_Mutation p.R3167Q 0.29 possibly_damaging(0.629) TCGA-FW-A3R5-06 7 48391896 48391896 G A ABCA13 Silent p.V3500V 0.34 TCGA-FW-A3R5-06 7 4841445 4841445 G A RADIL Missense_Mutation p.P894L 0.43 tolerated(0.41) benign(0.002) TCGA-FW-A3R5-06 7 48452052 48452052 G A ABCA13 Missense_Mutation p.E4111K 0.28 possibly_damaging(0.798) TCGA-FW-A3R5-06 7 48506595 48506595 G A ABCA13 Silent p.R4286R 0.23 TCGA-FW-A3R5-06 7 48528861 48528861 C T ABCA13 Missense_Mutation p.S4404F 0.32 probably_damaging(0.984) TCGA-FW-A3R5-06 7 48547612 48547612 G A ABCA13 Silent p.R4497R 0.16 TCGA-FW-A3R5-06 7 48556366 48556366 C T ABCA13 Silent p.S4562S 0.25 TCGA-FW-A3R5-06 7 4855892 4855892 C T RADIL Missense_Mutation p.G645R 0.22 deleterious(0) possibly_damaging(0.836) TCGA-FW-A3R5-06 7 4855936 4855936 G A RADIL Missense_Mutation p.P630L 0.29 deleterious(0.04) benign(0.443) TCGA-FW-A3R5-06 7 48634378 48634378 G A ABCA13 Missense_Mutation p.E4905K 0.30 benign(0.114) TCGA-FW-A3R5-06 7 4946991 4946991 C T MMD2 3'UTR 0.34 TCGA-FW-A3R5-06 7 49951662 49951662 C T VWC2 Missense_Mutation p.P287S 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 7 49951682 49951682 G A VWC2 Silent p.K293K 0.23 TCGA-FW-A3R5-06 7 50097645 50097645 C T ZPBP Missense_Mutation p.E143K 0.22 tolerated(0.9) benign(0.016) TCGA-FW-A3R5-06 7 50367249 50367249 C T IKZF1 Missense_Mutation p.P19L 0.22 deleterious_low_confidence(0.04) benign(0.343) TCGA-FW-A3R5-06 7 50367257 50367257 G A IKZF1 Missense_Mutation p.D22N 0.28 deleterious(0.04) possibly_damaging(0.871) TCGA-FW-A3R5-06 7 50467665 50467665 G A IKZF1 Silent p.E258E 0.28 TCGA-FW-A3R5-06 7 50468302 50468302 G A IKZF1 Missense_Mutation p.E471K 0.19 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 7 50537852 50537852 C T DDC Silent p.L353L 0.24 TCGA-FW-A3R5-06 7 50560661 50560661 G A DDC Intron 0.37 TCGA-FW-A3R5-06 7 50605650 50605650 C T DDC Missense_Mutation p.E115K 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 50611658 50611658 G A DDC Silent p.I42I 0.43 TCGA-FW-A3R5-06 7 50611760 50611760 C T DDC Silent p.R8R 0.27 TCGA-FW-A3R5-06 7 50682527 50682527 G A GRB10 Silent p.F345F 0.18 TCGA-FW-A3R5-06 7 51092883 51092883 G A COBL Missense_Mutation p.L1231F 0.19 tolerated(0.12) possibly_damaging(0.718) TCGA-FW-A3R5-06 7 51096346 51096346 G A COBL Missense_Mutation p.P816L 0.18 deleterious(0.03) benign(0.005) TCGA-FW-A3R5-06 7 51258589 51258589 C T COBL Missense_Mutation p.E215K 0.21 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 7 51261233 51261233 G A COBL Missense_Mutation p.P100L 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 51287543 51287543 G A COBL Missense_Mutation p.S47L 0.26 tolerated(0.07) benign(0.104) TCGA-FW-A3R5-06 7 51287566 51287566 G A COBL Silent p.P39P 0.30 TCGA-FW-A3R5-06 7 5167360 5167360 G A ZNF890P RNA 0.15 TCGA-FW-A3R5-06 7 53103569 53103569 G A POM121L12 Missense_Mutation p.G69R 0.09 tolerated(0.16) probably_damaging(0.991) TCGA-FW-A3R5-06 7 53103654 53103654 G A POM121L12 Nonsense_Mutation p.W97* 0.36 TCGA-FW-A3R5-06 7 53103787 53103787 C T POM121L12 Silent p.I141I 0.31 TCGA-FW-A3R5-06 7 53104125 53104125 C T POM121L12 Missense_Mutation p.S254F 0.34 tolerated(0.42) benign(0) TCGA-FW-A3R5-06 7 53104213 53104213 C T POM121L12 Silent p.F283F 0.24 TCGA-FW-A3R5-06 7 53104320 53104320 C T POM121L12 3'UTR 0.28 TCGA-FW-A3R5-06 7 5331432 5331432 C T SLC29A4 Missense_Mutation p.T175I 0.11 tolerated(0.48) benign(0.015) TCGA-FW-A3R5-06 7 5340055 5340055 C T SLC29A4 Silent p.I404I 0.28 TCGA-FW-A3R5-06 7 5355600 5355600 G A TNRC18 Silent p.D2283D 0.21 TCGA-FW-A3R5-06 7 54610467 54610467 C T VSTM2A Missense_Mutation p.S15F 0.32 tolerated(0.27) benign(0.024) TCGA-FW-A3R5-06 7 54612349 54612349 G A VSTM2A Silent p.A38A 0.23 TCGA-FW-A3R5-06 7 54617532 54617532 G A VSTM2A Silent p.V101V 0.26 TCGA-FW-A3R5-06 7 54617553 54617553 C T VSTM2A Silent p.I108I 0.30 TCGA-FW-A3R5-06 7 55219018 55219018 G A EGFR Silent p.G197G 0.16 TCGA-FW-A3R5-06 7 55223540 55223540 G A EGFR Missense_Mutation p.D303N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 7 55224310 55224310 C T EGFR Missense_Mutation p.S364F 0.18 deleterious(0) possibly_damaging(0.726) TCGA-FW-A3R5-06 7 55238216 55238216 C T EGFR Intron 0.19 TCGA-FW-A3R5-06 7 55266508 55266508 C T EGFR Missense_Mutation p.P934S 0.21 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 7 55268032 55268032 C T EGFR Missense_Mutation p.R958C 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 55268104 55268104 C T EGFR Nonsense_Mutation p.Q982* 0.24 TCGA-FW-A3R5-06 7 55269448 55269448 C T EGFR Silent p.S1045S 0.28 TCGA-FW-A3R5-06 7 55272965 55272965 C T EGFR Silent p.S1096S 0.20 TCGA-FW-A3R5-06 7 55273347 55273347 C T EGFR 3'UTR 0.21 TCGA-FW-A3R5-06 7 5529693 5529693 G A FBXL18 Intron 0.38 TCGA-FW-A3R5-06 7 5540286 5540286 G A FBXL18 Silent p.L538L 0.34 TCGA-FW-A3R5-06 7 5540495 5540495 G A FBXL18 Missense_Mutation p.P469S 0.42 tolerated(0.75) benign(0.009) TCGA-FW-A3R5-06 7 5545195 5545195 G A FBXL18 Silent p.L29L 0.32 TCGA-FW-A3R5-06 7 55467736 55467736 C T LANCL2 Missense_Mutation p.A206V 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 55467766 55467766 C T LANCL2 Missense_Mutation p.P216L 0.25 tolerated(0.08) benign(0.345) TCGA-FW-A3R5-06 7 55560108 55560108 G A VOPP1 Silent p.F65F 0.19 TCGA-FW-A3R5-06 7 55565347 55565347 G A VOPP1 Silent p.C50C 0.17 TCGA-FW-A3R5-06 7 55565375 55565375 G A VOPP1 Missense_Mutation p.S41F 0.31 deleterious(0.01) possibly_damaging(0.542) TCGA-FW-A3R5-06 7 5567942 5567942 G A ACTB Missense_Mutation p.P258S 0.26 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-FW-A3R5-06 7 55755518 55755518 C T RNU6-389P 3'Flank 0.21 TCGA-FW-A3R5-06 7 55755519 55755519 C T RNU6-389P 3'Flank 0.22 TCGA-FW-A3R5-06 7 55863483 55863483 G A SEPT14 3'UTR 0.24 TCGA-FW-A3R5-06 7 55863771 55863771 G A SEPT14 Silent p.F378F 0.31 TCGA-FW-A3R5-06 7 55873040 55873040 G A SEPT14 Nonsense_Mutation p.Q344* 0.30 TCGA-FW-A3R5-06 7 55874926 55874926 G A SEPT14 Silent p.F281F 0.31 TCGA-FW-A3R5-06 7 55874940 55874940 T A SEPT14 Missense_Mutation p.N277Y 0.33 deleterious(0) probably_damaging(0.983) TCGA-FW-A3R5-06 7 55910724 55910724 G A SEPT14 Missense_Mutation p.R157C 0.41 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 7 55990881 55990881 C T MRPS17 Silent p.A25A 0.38 TCGA-FW-A3R5-06 7 56065061 56065061 T G GBAS Missense_Mutation p.Y239D 0.28 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 7 56148737 56148737 G A PHKG1 3'UTR 0.22 TCGA-FW-A3R5-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.56 TCGA-FW-A3R5-06 7 5662644 5662644 G A RNF216 Silent p.F873F 0.22 TCGA-FW-A3R5-06 7 57187685 57187685 G A ZNF479 Silent p.T479T 0.10 TCGA-FW-A3R5-06 7 57188492 57188492 C T ZNF479 Silent p.E210E 0.24 TCGA-FW-A3R5-06 7 57194407 57194407 C T ZNF479 Missense_Mutation p.D20N 0.10 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 57522848 57522848 G A ZNF716 Missense_Mutation p.R79K 0.15 tolerated(0.06) benign(0.016) TCGA-FW-A3R5-06 7 57522853 57522853 G A ZNF716 Missense_Mutation p.E81K 0.21 tolerated(0.1) benign(0.015) TCGA-FW-A3R5-06 7 57528795 57528795 G A ZNF716 Missense_Mutation p.E210K 0.19 tolerated(0.07) probably_damaging(0.992) TCGA-FW-A3R5-06 7 57529187 57529187 G A ZNF716 Silent p.K340K 0.28 TCGA-FW-A3R5-06 7 57529546 57529546 G A ZNF716 Missense_Mutation p.G460E 0.37 tolerated(0.06) probably_damaging(0.916) TCGA-FW-A3R5-06 7 57529548 57529548 G T ZNF716 Nonsense_Mutation p.E461* 0.39 TCGA-FW-A3R5-06 7 5925699 5925699 C T OCM Silent p.F103F 0.30 TCGA-FW-A3R5-06 7 6000469 6000469 C T RSPH10B Missense_Mutation p.M142I 0.27 deleterious(0) probably_damaging(0.955) TCGA-FW-A3R5-06 7 6026741 6026741 T C PMS2 Missense_Mutation p.H552R 0.28 tolerated(0.52) benign(0.001) TCGA-FW-A3R5-06 7 6094294 6094294 G A EIF2AK1 Silent p.L54L 0.22 TCGA-FW-A3R5-06 7 62752368 62752368 C T ZNF733P RNA 0.25 TCGA-FW-A3R5-06 7 62752599 62752599 C T ZNF733P RNA 0.18 TCGA-FW-A3R5-06 7 63529377 63529377 G A ZNF727 Missense_Mutation p.G38R 0.60 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 7 63529378 63529378 G A ZNF727 Missense_Mutation p.G38E 0.15 deleterious(0) benign(0.198) TCGA-FW-A3R5-06 7 63538522 63538522 G A ZNF727 Silent p.L365L 0.36 TCGA-FW-A3R5-06 7 63709421 63709421 C T ZNF679 5'UTR 0.26 TCGA-FW-A3R5-06 7 63726271 63726271 C T ZNF679 Intron 0.32 TCGA-FW-A3R5-06 7 63726506 63726506 C T ZNF679 Silent p.F165F 0.27 TCGA-FW-A3R5-06 7 63726872 63726872 G A ZNF679 Silent p.K287K 0.32 TCGA-FW-A3R5-06 7 63796756 63796756 C T ZNF736 Silent p.V41V 0.22 TCGA-FW-A3R5-06 7 63809132 63809132 C T ZNF736 Silent p.F297F 0.27 TCGA-FW-A3R5-06 7 64152334 64152334 C T ZNF107 Silent p.P5P 0.13 TCGA-FW-A3R5-06 7 64292248 64292248 C T ZNF138 Missense_Mutation p.L184F 0.25 tolerated(0.13) possibly_damaging(0.557) TCGA-FW-A3R5-06 7 64293105 64293105 C T ZNF138 3'Flank 0.23 TCGA-FW-A3R5-06 7 64639830 64639830 C T INTS4L1 RNA 0.12 TCGA-FW-A3R5-06 7 64639846 64639846 C T INTS4L1 RNA 0.20 TCGA-FW-A3R5-06 7 64643370 64643370 C T INTS4L1 RNA 0.18 TCGA-FW-A3R5-06 7 64649419 64649419 C T INTS4L1 RNA 0.23 TCGA-FW-A3R5-06 7 6476061 6476061 G A DAGLB Silent p.A117A 0.34 TCGA-FW-A3R5-06 7 64838904 64838904 C T ZNF92 5'UTR 0.11 TCGA-FW-A3R5-06 7 64864215 64864215 C T ZNF92 Silent p.P396P 0.29 TCGA-FW-A3R5-06 7 65160009 65160009 C T INTS4L2 RNA 0.34 TCGA-FW-A3R5-06 7 65160108 65160108 G A INTS4L2 RNA 0.24 TCGA-FW-A3R5-06 7 65557757 65557757 C T ASL Missense_Mutation p.P418L 0.23 deleterious(0) possibly_damaging(0.448) TCGA-FW-A3R5-06 7 66274319 66274319 C T KCTD7 3'UTR 0.25 TCGA-FW-A3R5-06 7 66274320 66274320 C T KCTD7 3'UTR 0.25 TCGA-FW-A3R5-06 7 6628572 6628572 C T ZDHHC4 3'UTR 0.26 TCGA-FW-A3R5-06 7 6641744 6641744 C T C7orf26 Missense_Mutation p.T374I 0.34 tolerated(0.07) possibly_damaging(0.702) TCGA-FW-A3R5-06 7 66482982 66482982 C T TYW1 Missense_Mutation p.S238F 0.34 deleterious(0.03) benign(0.18) TCGA-FW-A3R5-06 7 66648120 66648120 G A TYW1 Missense_Mutation p.R569Q 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 6731807 6731807 G A ZNF12 Missense_Mutation p.L256F 0.25 tolerated(0.35) probably_damaging(0.998) TCGA-FW-A3R5-06 7 70229978 70229978 G A AUTS2 Silent p.G485G 0.18 TCGA-FW-A3R5-06 7 70236545 70236545 C T AUTS2 Missense_Mutation p.S582F 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-FW-A3R5-06 7 70255709 70255709 C T AUTS2 Silent p.S1169S 0.19 TCGA-FW-A3R5-06 7 70880876 70880876 G A WBSCR17 Silent p.E197E 0.22 TCGA-FW-A3R5-06 7 71036318 71036318 C T WBSCR17 Silent p.F337F 0.24 TCGA-FW-A3R5-06 7 71130426 71130426 C T WBSCR17 Missense_Mutation p.L371F 0.24 deleterious(0) probably_damaging(0.915) TCGA-FW-A3R5-06 7 71135091 71135091 G A WBSCR17 Silent p.G467G 0.28 TCGA-FW-A3R5-06 7 71743780 71743780 G A CALN1 Silent p.F45F 0.18 TCGA-FW-A3R5-06 7 72159743 72159743 G A MIR4650-2 5'Flank 0.26 TCGA-FW-A3R5-06 7 72361646 72361646 C T POM121 5'UTR 0.15 TCGA-FW-A3R5-06 7 72411508 72411508 C T POM121 Missense_Mutation p.P342S 0.41 tolerated(1) benign(0.007) TCGA-FW-A3R5-06 7 72413369 72413369 C T POM121 Missense_Mutation p.P681L 0.14 deleterious(0.02) possibly_damaging(0.725) TCGA-FW-A3R5-06 7 72413453 72413453 C T POM121 Missense_Mutation p.A709V 0.21 tolerated(0.06) probably_damaging(0.921) TCGA-FW-A3R5-06 7 72413721 72413721 C T POM121 Silent p.V798V 0.14 TCGA-FW-A3R5-06 7 72657238 72657238 C T GTF2IRD2P1 RNA 0.29 TCGA-FW-A3R5-06 7 72657294 72657294 C T GTF2IRD2P1 RNA 0.36 TCGA-FW-A3R5-06 7 72657454 72657454 C T GTF2IRD2P1 RNA 0.27 TCGA-FW-A3R5-06 7 72657621 72657621 C T GTF2IRD2P1 RNA 0.32 TCGA-FW-A3R5-06 7 72657830 72657830 G A GTF2IRD2P1 RNA 0.26 TCGA-FW-A3R5-06 7 72658083 72658083 C T GTF2IRD2P1 RNA 0.50 TCGA-FW-A3R5-06 7 72658689 72658689 C T GTF2IRD2P1 RNA 0.27 TCGA-FW-A3R5-06 7 72667626 72667626 G A GTF2IRD2P1 RNA 0.22 TCGA-FW-A3R5-06 7 72685619 72685619 G A GTF2IRD2P1 RNA 0.34 TCGA-FW-A3R5-06 7 72738612 72738612 C T TRIM50 Silent p.Q58Q 0.27 TCGA-FW-A3R5-06 7 72742623 72742623 G A FKBP6 Missense_Mutation p.D35N 0.15 tolerated(0.07) possibly_damaging(0.721) TCGA-FW-A3R5-06 7 7283191 7283191 C T C1GALT1 Missense_Mutation p.H309Y 0.17 deleterious(0) possibly_damaging(0.686) TCGA-FW-A3R5-06 7 72857095 72857095 G A BAZ1B Missense_Mutation p.L1352F 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-FW-A3R5-06 7 72903596 72903596 G A BAZ1B Silent p.V273V 0.18 TCGA-FW-A3R5-06 7 72985229 72985229 G A TBL2 Missense_Mutation p.P318S 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 7 73085400 73085400 C T VPS37D Silent p.A150A 0.30 TCGA-FW-A3R5-06 7 73184326 73184326 C T CLDN3 Silent p.L18L 0.36 TCGA-FW-A3R5-06 7 73246037 73246037 C T CLDN4 Missense_Mutation p.A169V 0.24 tolerated(0.09) benign(0.29) TCGA-FW-A3R5-06 7 73254755 73254755 G A WBSCR27 Missense_Mutation p.P126L 0.44 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 73275514 73275514 G A WBSCR28 5'UTR 0.21 TCGA-FW-A3R5-06 7 73279445 73279445 C T WBSCR28 Silent p.P65P 0.19 TCGA-FW-A3R5-06 7 73442514 73442514 C T ELN 5'UTR 0.28 TCGA-FW-A3R5-06 7 73470747 73470747 C T ELN Missense_Mutation p.P433S 0.35 unknown(0) TCGA-FW-A3R5-06 7 73474369 73474369 G A ELN Missense_Mutation p.G523E 0.08 unknown(0) TCGA-FW-A3R5-06 7 73474816 73474816 C T ELN Missense_Mutation p.P578S 0.34 unknown(0) TCGA-FW-A3R5-06 7 73477502 73477502 C T ELN Silent p.V602V 0.32 TCGA-FW-A3R5-06 7 73477983 73477983 G A ELN Missense_Mutation p.G651R 0.13 unknown(0) TCGA-FW-A3R5-06 7 73483143 73483143 G A ELN 3'UTR 0.37 TCGA-FW-A3R5-06 7 73513451 73513451 C T LIMK1 Missense_Mutation p.T164I 0.30 deleterious(0.02) probably_damaging(0.917) TCGA-FW-A3R5-06 7 73535261 73535261 C T LIMK1 Missense_Mutation p.R555C 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 73631186 73631186 G A LAT2 Silent p.Q42Q 0.16 TCGA-FW-A3R5-06 7 73646424 73646424 G A RFC2 3'UTR 0.11 TCGA-FW-A3R5-06 7 74005167 74005167 C T GTF2IRD1 Silent p.G836G 0.33 TCGA-FW-A3R5-06 7 74470049 74470049 G A WBSCR16 Missense_Mutation p.S397F 0.28 deleterious(0.01) possibly_damaging(0.514) TCGA-FW-A3R5-06 7 74564283 74564283 C T GTF2IRD2B Missense_Mutation p.S677F 0.19 tolerated(0.69) possibly_damaging(0.48) TCGA-FW-A3R5-06 7 74565199 74565199 T C GTF2IRD2B 3'UTR 0.30 TCGA-FW-A3R5-06 7 75028342 75028342 C T TRIM73 Missense_Mutation p.S42F 0.19 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 7 751015 751015 G A PRKAR1B Missense_Mutation p.P43L 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 75174037 75174037 G A HIP1 Missense_Mutation p.H908Y 0.24 deleterious(0) possibly_damaging(0.679) TCGA-FW-A3R5-06 7 75177050 75177050 G A HIP1 Intron 0.31 TCGA-FW-A3R5-06 7 75192536 75192536 G A HIP1 Silent p.L279L 0.11 TCGA-FW-A3R5-06 7 75203197 75203197 G A HIP1 Missense_Mutation p.S205F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 7561562 7561562 C T COL28A1 Missense_Mutation p.G245R 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 75634657 75634657 G A STYXL1 Silent p.F173F 0.26 TCGA-FW-A3R5-06 7 75689783 75689783 C T MDH2 Silent p.I174I 0.34 TCGA-FW-A3R5-06 7 7572486 7572486 G A COL28A1 Silent p.V7V 0.32 TCGA-FW-A3R5-06 7 75894696 75894696 C T SRRM3 Missense_Mutation p.S247F 0.32 deleterious(0) unknown(0) TCGA-FW-A3R5-06 7 75894779 75894779 C T SRRM3 Missense_Mutation p.P275S 0.25 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 7 76029657 76029657 C T SRCRB4D Missense_Mutation p.G141S 0.13 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 76141016 76141016 C T UPK3B Missense_Mutation p.P148L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.871) TCGA-FW-A3R5-06 7 76629685 76629685 C G UPK3B Intron 0.14 TCGA-FW-A3R5-06 7 76826243 76826243 C T FGL2 Missense_Mutation p.E225K 0.24 tolerated(0.12) benign(0.038) TCGA-FW-A3R5-06 7 76828852 76828852 C T FGL2 Missense_Mutation p.E87K 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-FW-A3R5-06 7 76828970 76828970 C T FGL2 Silent p.G47G 0.24 TCGA-FW-A3R5-06 7 76829014 76829014 C T FGL2 Missense_Mutation p.E33K 0.16 tolerated(0.56) benign(0.034) TCGA-FW-A3R5-06 7 76908153 76908153 C T CCDC146 Missense_Mutation p.R509W 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-FW-A3R5-06 7 769422 769422 G A HEATR2 Missense_Mutation p.G240R 0.29 deleterious(0) probably_damaging(0.947) TCGA-FW-A3R5-06 7 769423 769423 G A HEATR2 Missense_Mutation p.G240E 0.29 deleterious(0) probably_damaging(0.924) TCGA-FW-A3R5-06 7 769447 769447 C T HEATR2 Missense_Mutation p.S248F 0.30 deleterious(0.02) probably_damaging(0.91) TCGA-FW-A3R5-06 7 76955545 76955545 C T GSAP Missense_Mutation p.R604Q 0.24 tolerated(0.26) benign(0.041) TCGA-FW-A3R5-06 7 76958702 76958702 C T GSAP Missense_Mutation p.G561R 0.30 tolerated(0.12) benign(0.103) TCGA-FW-A3R5-06 7 77004407 77004407 G A GSAP Silent p.P251P 0.19 TCGA-FW-A3R5-06 7 77006657 77006657 G A GSAP Silent p.F209F 0.11 TCGA-FW-A3R5-06 7 77402549 77402549 C T RSBN1L Missense_Mutation p.H571Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 77569557 77569557 C T PHTF2 Missense_Mutation p.R526C 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 77764371 77764371 G A MAGI2 Missense_Mutation p.L1000F 0.23 tolerated(0.27) probably_damaging(0.999) TCGA-FW-A3R5-06 7 77885578 77885578 G A MAGI2 Nonsense_Mutation p.Q577* 0.26 TCGA-FW-A3R5-06 7 77973147 77973147 C T MAGI2 Silent p.V452V 0.30 TCGA-FW-A3R5-06 7 780476 780476 C T HEATR2 Silent p.S267S 0.20 TCGA-FW-A3R5-06 7 80108268 80108268 C T GNAT3 Missense_Mutation p.G117D 0.23 tolerated(0.36) probably_damaging(0.985) TCGA-FW-A3R5-06 7 80374441 80374441 G A SEMA3C Silent p.S675S 0.32 TCGA-FW-A3R5-06 7 81381353 81381353 C T HGF Intron 0.30 TCGA-FW-A3R5-06 7 81381515 81381515 C T HGF Silent p.G182G 0.08 TCGA-FW-A3R5-06 7 81381519 81381519 C T HGF Missense_Mutation p.R181Q 0.17 tolerated(0.18) benign(0.086) TCGA-FW-A3R5-06 7 81599243 81599243 C T CACNA2D1 Silent p.R754R 0.20 TCGA-FW-A3R5-06 7 81634807 81634807 G A CACNA2D1 Missense_Mutation p.P508S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 7 81643776 81643776 G A CACNA2D1 Missense_Mutation p.S388L 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 8167710 8167710 G A ICA1 Silent p.L375L 0.15 TCGA-FW-A3R5-06 7 8183561 8183561 C T ICA1 Silent p.E282E 0.33 TCGA-FW-A3R5-06 7 8196821 8196821 C T ICA1 Silent p.E243E 0.30 TCGA-FW-A3R5-06 7 82387721 82387721 C T PCLO 3'UTR 0.22 TCGA-FW-A3R5-06 7 82467539 82467539 C T PCLO Silent p.G4739G 0.29 TCGA-FW-A3R5-06 7 825227 825227 C T HEATR2 Silent p.H835H 0.33 TCGA-FW-A3R5-06 7 82544322 82544322 G A PCLO Missense_Mutation p.S4327F 0.32 unknown(0) TCGA-FW-A3R5-06 7 82544344 82544344 C T PCLO Missense_Mutation p.E4320K 0.30 unknown(0) TCGA-FW-A3R5-06 7 82544596 82544596 G A PCLO Missense_Mutation p.L4236F 0.22 unknown(0) TCGA-FW-A3R5-06 7 82545019 82545019 G A PCLO Silent p.L4095L 0.23 TCGA-FW-A3R5-06 7 82578909 82578909 G A PCLO Silent p.P3665P 0.08 TCGA-FW-A3R5-06 7 82578963 82578963 G A PCLO Silent p.L3647L 0.25 TCGA-FW-A3R5-06 7 82579556 82579556 C T PCLO Missense_Mutation p.E3450K 0.29 unknown(0) TCGA-FW-A3R5-06 7 82580119 82580119 G A PCLO Missense_Mutation p.S3262F 0.09 unknown(0) TCGA-FW-A3R5-06 7 82580687 82580687 C T PCLO Missense_Mutation p.G3073R 0.38 unknown(0) TCGA-FW-A3R5-06 7 82582174 82582174 G A PCLO Missense_Mutation p.P2699S 0.26 unknown(0) TCGA-FW-A3R5-06 7 82582563 82582563 G A PCLO Missense_Mutation p.S2569L 0.27 unknown(0) TCGA-FW-A3R5-06 7 82583248 82583248 C T PCLO Missense_Mutation p.D2341N 0.27 unknown(0) TCGA-FW-A3R5-06 7 82583815 82583815 C T PCLO Missense_Mutation p.E2152K 0.33 unknown(0) TCGA-FW-A3R5-06 7 82583817 82583817 C T PCLO Missense_Mutation p.R2151K 0.21 unknown(0) TCGA-FW-A3R5-06 7 82584325 82584325 C T PCLO Missense_Mutation p.G1982R 0.19 unknown(0) TCGA-FW-A3R5-06 7 82584932 82584932 C T PCLO Silent p.L1779L 0.30 TCGA-FW-A3R5-06 7 82585375 82585375 C T PCLO Missense_Mutation p.E1632K 0.29 unknown(0) TCGA-FW-A3R5-06 7 82585473 82585473 C T PCLO Missense_Mutation p.G1599E 0.21 unknown(0) TCGA-FW-A3R5-06 7 82585475 82585475 C T PCLO Silent p.K1598K 0.21 TCGA-FW-A3R5-06 7 82585704 82585704 G A PCLO Missense_Mutation p.S1522L 0.37 unknown(0) TCGA-FW-A3R5-06 7 82595399 82595399 G A PCLO Silent p.L1235L 0.25 TCGA-FW-A3R5-06 7 8275589 8275589 G A ICA1 5'UTR 0.26 TCGA-FW-A3R5-06 7 82763915 82763915 C T PCLO Missense_Mutation p.G984D 0.39 unknown(0) TCGA-FW-A3R5-06 7 82764008 82764008 C T PCLO Missense_Mutation p.G953E 0.28 unknown(0) TCGA-FW-A3R5-06 7 82784186 82784186 G A PCLO Missense_Mutation p.L591F 0.26 unknown(0) TCGA-FW-A3R5-06 7 82784504 82784504 C T PCLO Missense_Mutation p.G485S 0.27 probably_damaging(0.931) TCGA-FW-A3R5-06 7 82784638 82784638 G A PCLO Missense_Mutation p.P440L 0.16 possibly_damaging(0.851) TCGA-FW-A3R5-06 7 82784861 82784861 G A PCLO Missense_Mutation p.L366F 0.16 unknown(0) TCGA-FW-A3R5-06 7 82785261 82785261 C T PCLO Silent p.Q232Q 0.35 TCGA-FW-A3R5-06 7 82785568 82785568 G A PCLO Missense_Mutation p.P130L 0.24 unknown(0) TCGA-FW-A3R5-06 7 82997234 82997234 G A SEMA3E Missense_Mutation p.R666C 0.34 tolerated(0.08) possibly_damaging(0.855) TCGA-FW-A3R5-06 7 83023654 83023654 C T SEMA3E Missense_Mutation p.D487N 0.30 tolerated(0.49) benign(0.148) TCGA-FW-A3R5-06 7 83095854 83095854 C T SEMA3E Missense_Mutation p.G134S 0.31 deleterious(0.01) benign(0.361) TCGA-FW-A3R5-06 7 83591047 83591047 C T SEMA3A Silent p.V652V 0.25 TCGA-FW-A3R5-06 7 83610752 83610752 G A SEMA3A Missense_Mutation p.P513S 0.10 tolerated(0.69) benign(0.084) TCGA-FW-A3R5-06 7 83631363 83631363 C T SEMA3A Splice_Site p.X454_splice 0.29 TCGA-FW-A3R5-06 7 83634662 83634662 G A SEMA3A Silent p.I451I 0.22 TCGA-FW-A3R5-06 7 83636688 83636688 G A SEMA3A Missense_Mutation p.P374L 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 83675644 83675644 G A SEMA3A Silent p.L221L 0.33 TCGA-FW-A3R5-06 7 83764144 83764144 G A SEMA3A Missense_Mutation p.S79L 0.25 tolerated(0.38) probably_damaging(1) TCGA-FW-A3R5-06 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.29 tolerated(0.05) probably_damaging(0.997) TCGA-FW-A3R5-06 7 86394637 86394637 G A GRM3 Missense_Mutation p.R59Q 0.20 tolerated(0.31) benign(0.003) TCGA-FW-A3R5-06 7 86394822 86394822 G A GRM3 Missense_Mutation p.D121N 0.24 deleterious(0.04) benign(0.158) TCGA-FW-A3R5-06 7 86415927 86415927 C T GRM3 Silent p.V273V 0.09 TCGA-FW-A3R5-06 7 86415993 86415993 C T GRM3 Silent p.F295F 0.33 TCGA-FW-A3R5-06 7 86416107 86416107 C T GRM3 Silent p.F333F 0.42 TCGA-FW-A3R5-06 7 86416200 86416200 G A GRM3 Silent p.Q364Q 0.30 TCGA-FW-A3R5-06 7 86416290 86416290 G A GRM3 Silent p.V394V 0.25 TCGA-FW-A3R5-06 7 86468644 86468644 C T GRM3 Missense_Mutation p.P605L 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 86493638 86493638 G A GRM3 Silent p.R869R 0.22 TCGA-FW-A3R5-06 7 86537848 86537848 C T KIAA1324L Missense_Mutation p.E791K 0.33 tolerated(0.15) benign(0.049) TCGA-FW-A3R5-06 7 86542418 86542418 C T KIAA1324L Missense_Mutation p.E612K 0.17 tolerated(0.33) benign(0.062) TCGA-FW-A3R5-06 7 86978368 86978368 C T CROT 5'UTR 0.37 TCGA-FW-A3R5-06 7 87037411 87037411 C T ABCB4 Missense_Mutation p.G1074E 0.17 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 87041247 87041247 G A ABCB4 Silent p.L962L 0.30 TCGA-FW-A3R5-06 7 87069667 87069667 C T ABCB4 Missense_Mutation p.E470K 0.34 deleterious(0.02) possibly_damaging(0.817) TCGA-FW-A3R5-06 7 87082389 87082389 G A ABCB4 Missense_Mutation p.S136L 0.28 tolerated(0.13) benign(0.261) TCGA-FW-A3R5-06 7 87092091 87092091 C T ABCB4 Missense_Mutation p.G90E 0.19 tolerated(0.63) benign(0.003) TCGA-FW-A3R5-06 7 87092147 87092147 G A ABCB4 Silent p.L71L 0.22 TCGA-FW-A3R5-06 7 87145863 87145863 G A ABCB1 Missense_Mutation p.P1016S 0.22 deleterious(0.03) benign(0.422) TCGA-FW-A3R5-06 7 87170679 87170679 G A ABCB1 Silent p.F771F 0.29 TCGA-FW-A3R5-06 7 87173491 87173491 C T ABCB1 Missense_Mutation p.G722E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 87175226 87175226 C T ABCB1 Missense_Mutation p.E614K 0.23 tolerated(0.06) benign(0.063) TCGA-FW-A3R5-06 7 87179319 87179319 C T ABCB1 Missense_Mutation p.E468K 0.23 deleterious(0.02) possibly_damaging(0.463) TCGA-FW-A3R5-06 7 87180118 87180118 C T ABCB1 Missense_Mutation p.G346R 0.33 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 7 87195420 87195420 G A ABCB1 Missense_Mutation p.P223L 0.26 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 87329760 87329760 G A RUNDC3B Missense_Mutation p.E105K 0.23 deleterious(0.01) possibly_damaging(0.45) TCGA-FW-A3R5-06 7 87329812 87329812 C T RUNDC3B Missense_Mutation p.S122L 0.29 deleterious(0) benign(0.158) TCGA-FW-A3R5-06 7 87466116 87466116 G A SLC25A40 Missense_Mutation p.P278L 0.36 tolerated(0.14) benign(0.119) TCGA-FW-A3R5-06 7 87487997 87487997 G A SLC25A40 Missense_Mutation p.L16F 0.26 tolerated(0.23) benign(0.016) TCGA-FW-A3R5-06 7 87757920 87757920 C T ADAM22 Missense_Mutation p.R228C 0.32 deleterious(0.02) possibly_damaging(0.453) TCGA-FW-A3R5-06 7 87772351 87772351 C T ADAM22 Missense_Mutation p.P411S 0.26 tolerated(0.08) probably_damaging(0.97) TCGA-FW-A3R5-06 7 87772364 87772364 C T ADAM22 Missense_Mutation p.T415I 0.19 deleterious(0) benign(0.446) TCGA-FW-A3R5-06 7 87837763 87837763 G A SRI Intron 0.19 TCGA-FW-A3R5-06 7 8790821 8790821 G A NXPH1 Missense_Mutation p.E80K 0.42 tolerated(0.32) benign(0.018) TCGA-FW-A3R5-06 7 8790865 8790865 C T NXPH1 Silent p.S94S 0.23 TCGA-FW-A3R5-06 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.24 tolerated(0.07) benign(0.032) TCGA-FW-A3R5-06 7 87913508 87913508 C T STEAP4 Missense_Mutation p.G26E 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 88423588 88423588 G A C7orf62 Silent p.F223F 0.33 TCGA-FW-A3R5-06 7 88424283 88424283 G A C7orf62 5'UTR 0.21 TCGA-FW-A3R5-06 7 88847478 88847478 G A ZNF804B Missense_Mutation p.E40K 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 7 88965048 88965048 G A ZNF804B Missense_Mutation p.G918R 0.17 deleterious(0.04) benign(0.079) TCGA-FW-A3R5-06 7 88965258 88965258 G A ZNF804B Missense_Mutation p.E988K 0.35 tolerated(1) benign(0) TCGA-FW-A3R5-06 7 892285 892285 C T SUN1 Silent p.I297I 0.23 TCGA-FW-A3R5-06 7 89854483 89854483 G A STEAP2 Silent p.R29R 0.22 TCGA-FW-A3R5-06 7 89854527 89854527 C T STEAP2 Missense_Mutation p.S44F 0.32 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 7 89854724 89854724 G A STEAP2 Missense_Mutation p.G110S 0.33 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 7 89983814 89983814 C T GTPBP10 Silent p.I90I 0.28 TCGA-FW-A3R5-06 7 90007497 90007497 C T GTPBP10 Missense_Mutation p.A250V 0.36 deleterious(0.01) possibly_damaging(0.802) TCGA-FW-A3R5-06 7 90042413 90042413 C T CLDN12 Silent p.F141F 0.30 TCGA-FW-A3R5-06 7 90355918 90355918 G A CDK14 Missense_Mutation p.G36E 0.08 tolerated_low_confidence(0.06) probably_damaging(0.988) TCGA-FW-A3R5-06 7 90895665 90895665 C T FZD1 Silent p.F490F 0.28 TCGA-FW-A3R5-06 7 91709262 91709262 C T AKAP9 Silent p.T2605T 0.37 TCGA-FW-A3R5-06 7 91726016 91726016 C T AKAP9 Missense_Mutation p.S3248L 0.69 probably_damaging(0.998) TCGA-FW-A3R5-06 7 91753076 91753076 G A CYP51A1 Missense_Mutation p.L288F 0.10 deleterious(0.04) benign(0.097) TCGA-FW-A3R5-06 7 92027138 92027138 C T ANKIB1 Missense_Mutation p.P833S 0.25 tolerated_low_confidence(0.07) benign(0.104) TCGA-FW-A3R5-06 7 92027859 92027859 C T ANKIB1 Missense_Mutation p.P956S 0.32 tolerated_low_confidence(0.38) benign(0.001) TCGA-FW-A3R5-06 7 92164170 92164170 C T RBM48 Silent p.N301N 0.29 TCGA-FW-A3R5-06 7 927046 927046 C T GET4 Missense_Mutation p.S119F 0.26 deleterious(0.02) possibly_damaging(0.905) TCGA-FW-A3R5-06 7 92730808 92730808 C T SAMD9 Missense_Mutation p.E1535K 0.29 deleterious(0) possibly_damaging(0.479) TCGA-FW-A3R5-06 7 92731606 92731606 C T SAMD9 Missense_Mutation p.D1269N 0.24 tolerated(0.07) benign(0.169) TCGA-FW-A3R5-06 7 92734303 92734303 C A SAMD9 Missense_Mutation p.A370S 0.14 tolerated(0.15) benign(0.156) TCGA-FW-A3R5-06 7 92734558 92734558 G A SAMD9 Nonsense_Mutation p.R285* 0.27 TCGA-FW-A3R5-06 7 92760565 92760565 C T SAMD9L Missense_Mutation p.E1574K 0.29 tolerated(0.25) benign(0.096) TCGA-FW-A3R5-06 7 92760700 92760700 C T SAMD9L Missense_Mutation p.A1529T 0.19 tolerated(0.22) benign(0.259) TCGA-FW-A3R5-06 7 92760756 92760756 C T SAMD9L Missense_Mutation p.G1510E 0.32 deleterious(0.05) benign(0.437) TCGA-FW-A3R5-06 7 92761127 92761127 G A SAMD9L Silent p.A1386A 0.06 TCGA-FW-A3R5-06 7 92761935 92761935 G A SAMD9L Missense_Mutation p.S1117F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 92762058 92762058 C T SAMD9L Missense_Mutation p.R1076K 0.29 tolerated(0.92) benign(0) TCGA-FW-A3R5-06 7 92763148 92763148 C T SAMD9L Missense_Mutation p.D713N 0.35 deleterious(0.01) possibly_damaging(0.696) TCGA-FW-A3R5-06 7 92764208 92764208 C T SAMD9L Silent p.R359R 0.13 TCGA-FW-A3R5-06 7 92764252 92764252 C T SAMD9L Missense_Mutation p.E345K 0.32 deleterious(0.01) benign(0.444) TCGA-FW-A3R5-06 7 92764593 92764593 G A SAMD9L Missense_Mutation p.S231L 0.31 deleterious(0) possibly_damaging(0.511) TCGA-FW-A3R5-06 7 92826581 92826581 C T HEPACAM2 Missense_Mutation p.E392K 0.30 deleterious(0.01) benign(0.092) TCGA-FW-A3R5-06 7 92826798 92826798 C T HEPACAM2 Missense_Mutation p.V380I 0.14 tolerated(0.09) benign(0.005) TCGA-FW-A3R5-06 7 92844872 92844872 C T HEPACAM2 Missense_Mutation p.G186E 0.21 tolerated(0.06) benign(0.069) TCGA-FW-A3R5-06 7 92848455 92848455 C T HEPACAM2 Missense_Mutation p.G130E 0.25 tolerated(0.1) probably_damaging(0.959) TCGA-FW-A3R5-06 7 92953005 92953005 C T CCDC132 Silent p.Y646Y 0.16 TCGA-FW-A3R5-06 7 93065419 93065419 C T CALCR Missense_Mutation p.E366K 0.27 tolerated(0.26) possibly_damaging(0.447) TCGA-FW-A3R5-06 7 93090139 93090139 C T CALCR Silent p.R248R 0.17 TCGA-FW-A3R5-06 7 93098047 93098047 C T CALCR Silent p.L185L 0.15 TCGA-FW-A3R5-06 7 93098092 93098092 A G CALCR Silent p.A170A 0.20 TCGA-FW-A3R5-06 7 93106913 93106913 G A CALCR Silent p.S109S 0.25 TCGA-FW-A3R5-06 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.28 tolerated(0.14) benign(0.066) TCGA-FW-A3R5-06 7 938710 938710 C T ADAP1 Silent p.Q352Q 0.25 TCGA-FW-A3R5-06 7 938749 938749 C T ADAP1 Silent p.E339E 0.23 TCGA-FW-A3R5-06 7 939091 939091 C T ADAP1 Missense_Mutation p.D278N 0.37 deleterious(0.03) possibly_damaging(0.618) TCGA-FW-A3R5-06 7 94028396 94028396 G A COL1A2 Silent p.R44R 0.29 TCGA-FW-A3R5-06 7 94048819 94048819 G A COL1A2 Missense_Mutation p.G679S 0.28 unknown(0) TCGA-FW-A3R5-06 7 94049587 94049587 C T COL1A2 Missense_Mutation p.R708W 0.23 unknown(0) TCGA-FW-A3R5-06 7 94049590 94049590 G A COL1A2 Missense_Mutation p.G709R 0.11 unknown(0) TCGA-FW-A3R5-06 7 94052354 94052354 G A COL1A2 Missense_Mutation p.R830Q 0.30 unknown(0) TCGA-FW-A3R5-06 7 94053657 94053657 G A COL1A2 Missense_Mutation p.G859S 0.25 unknown(0) TCGA-FW-A3R5-06 7 94056584 94056584 C T COL1A2 Missense_Mutation p.P1082S 0.42 unknown(0) TCGA-FW-A3R5-06 7 94056942 94056942 C T COL1A2 Missense_Mutation p.P1091S 0.28 unknown(0) TCGA-FW-A3R5-06 7 94146881 94146881 C T CASD1 Missense_Mutation p.S48L 0.21 deleterious(0) benign(0.078) TCGA-FW-A3R5-06 7 94185045 94185045 C T CASD1 Missense_Mutation p.S790F 0.31 deleterious(0.02) benign(0.094) TCGA-FW-A3R5-06 7 94293537 94293537 C T PEG10 Silent p.V223V 0.46 TCGA-FW-A3R5-06 7 944731 944731 C T ADAP1 Missense_Mutation p.R156Q 0.35 deleterious(0.05) benign(0.173) TCGA-FW-A3R5-06 7 94539691 94539691 G A PPP1R9A Missense_Mutation p.G89E 0.40 tolerated(0.16) probably_damaging(0.949) TCGA-FW-A3R5-06 7 94539793 94539793 G A PPP1R9A Missense_Mutation p.R123Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 94539929 94539929 G A PPP1R9A Silent p.G168G 0.40 TCGA-FW-A3R5-06 7 94540021 94540021 C T PPP1R9A Missense_Mutation p.S199F 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 94540532 94540532 C T PPP1R9A Silent p.F369F 0.36 TCGA-FW-A3R5-06 7 94540736 94540736 G A PPP1R9A Missense_Mutation p.M437I 0.29 tolerated(0.47) benign(0.009) TCGA-FW-A3R5-06 7 94740655 94740655 G A PPP1R9A Missense_Mutation p.E494K 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 94898020 94898020 G A PPP1R9A Splice_Site p.X941_splice 0.23 TCGA-FW-A3R5-06 7 94913333 94913333 C T PPP1R9A Silent p.I1100I 0.39 TCGA-FW-A3R5-06 7 94931643 94931643 G A PON1 Silent p.S261S 0.10 TCGA-FW-A3R5-06 7 94935616 94935616 C T PON1 Nonsense_Mutation p.W254* 0.17 TCGA-FW-A3R5-06 7 94944637 94944637 C T PON1 Missense_Mutation p.E123K 0.23 tolerated(0.94) benign(0.014) TCGA-FW-A3R5-06 7 94944769 94944769 G A PON1 Missense_Mutation p.P79S 0.16 tolerated(0.12) benign(0.424) TCGA-FW-A3R5-06 7 94946066 94946066 C T PON1 Missense_Mutation p.G61R 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 94993217 94993217 C T PON3 Missense_Mutation p.G218E 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 7 94993239 94993239 C T PON3 Missense_Mutation p.E211K 0.28 tolerated(0.12) benign(0.198) TCGA-FW-A3R5-06 7 95001514 95001514 G A PON3 Missense_Mutation p.P113L 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 95001578 95001578 C T PON3 Missense_Mutation p.E92K 0.23 tolerated(0.11) benign(0.008) TCGA-FW-A3R5-06 7 95019472 95019472 G A PON3 Silent p.I65I 0.26 TCGA-FW-A3R5-06 7 95035513 95035513 G A PON2 Missense_Mutation p.S275F 0.26 tolerated(0.11) benign(0.004) TCGA-FW-A3R5-06 7 95214844 95214844 C T PDK4 3'UTR 0.29 TCGA-FW-A3R5-06 7 95221348 95221348 C T PDK4 Missense_Mutation p.D216N 0.30 deleterious(0.01) benign(0.005) TCGA-FW-A3R5-06 7 95606832 95606832 G A DYNC1I1 Missense_Mutation p.E184K 0.43 tolerated(0.06) benign(0.081) TCGA-FW-A3R5-06 7 95606880 95606880 G A DYNC1I1 Missense_Mutation p.E200K 0.10 tolerated(0.55) benign(0.064) TCGA-FW-A3R5-06 7 959657 959657 C T ADAP1 Silent p.K112K 0.26 TCGA-FW-A3R5-06 7 97481532 97481532 G A ASNS 3'UTR 0.24 TCGA-FW-A3R5-06 7 97617821 97617821 G A OCM2 Missense_Mutation p.S34L 0.31 tolerated(0.1) benign(0.361) TCGA-FW-A3R5-06 7 97852431 97852431 G A TECPR1 Silent p.A933A 0.27 TCGA-FW-A3R5-06 7 98249169 98249169 G A NPTX2 Missense_Mutation p.R214Q 0.11 tolerated(0.07) benign(0.019) TCGA-FW-A3R5-06 7 98445595 98445595 C T TMEM130 3'UTR 0.15 TCGA-FW-A3R5-06 7 98449122 98449122 C T TMEM130 Missense_Mutation p.D310N 0.36 deleterious(0.02) probably_damaging(0.913) TCGA-FW-A3R5-06 7 98460836 98460836 G A TMEM130 Silent p.S91S 0.11 TCGA-FW-A3R5-06 7 98507826 98507826 C T TRRAP Missense_Mutation p.P500S 0.27 possibly_damaging(0.641) TCGA-FW-A3R5-06 7 98528268 98528268 C T TRRAP Missense_Mutation p.P1136S 0.32 possibly_damaging(0.878) TCGA-FW-A3R5-06 7 98545880 98545880 C T TRRAP Missense_Mutation p.H1522Y 0.34 benign(0.222) TCGA-FW-A3R5-06 7 98547864 98547864 C T TRRAP Silent p.F1764F 0.32 TCGA-FW-A3R5-06 7 98555693 98555693 C T TRRAP Silent p.F2100F 0.26 TCGA-FW-A3R5-06 7 98592348 98592348 C T TRRAP Silent p.L3382L 0.30 TCGA-FW-A3R5-06 7 99124001 99124001 C T ZKSCAN5 Silent p.I446I 0.27 TCGA-FW-A3R5-06 7 99171107 99171107 C T ZNF655 Missense_Mutation p.T494I 0.26 deleterious(0.03) possibly_damaging(0.702) TCGA-FW-A3R5-06 7 99264355 99264355 C T CYP3A5 Intron 0.19 TCGA-FW-A3R5-06 7 99303043 99303043 C T CYP3A7 3'UTR 0.37 TCGA-FW-A3R5-06 7 99305460 99305460 G A CYP3A7 Missense_Mutation p.S464F 0.07 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 7 99308381 99308381 C T CYP3A7 Missense_Mutation p.E334K 0.26 deleterious(0.02) possibly_damaging(0.852) TCGA-FW-A3R5-06 7 99315203 99315203 C T CYP3A7 Nonsense_Mutation p.W126* 0.09 TCGA-FW-A3R5-06 7 99319926 99319926 C T CYP3A7 Missense_Mutation p.V71I 0.08 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 7 99358502 99358502 C T CYP3A4 Missense_Mutation p.M452I 0.30 tolerated(0.27) benign(0.06) TCGA-FW-A3R5-06 7 99367785 99367785 G A CYP3A4 Missense_Mutation p.S131L 0.26 deleterious(0.02) benign(0.059) TCGA-FW-A3R5-06 7 99459391 99459391 G A CYP3A43 Silent p.V394V 0.31 TCGA-FW-A3R5-06 7 99473921 99473921 C T OR2AE1 Missense_Mutation p.V246M 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 7 99489896 99489896 C T TRIM4 Missense_Mutation p.G465R 0.32 tolerated(0.09) probably_damaging(1) TCGA-FW-A3R5-06 7 99499640 99499640 G A TRIM4 Intron 0.37 TCGA-FW-A3R5-06 7 99506319 99506319 C T TRIM4 Silent p.T228T 0.24 TCGA-FW-A3R5-06 7 99526588 99526588 C T GJC3 Nonsense_Mutation p.W219* 0.31 TCGA-FW-A3R5-06 7 99564686 99564686 G A AZGP1 Silent p.S279S 0.25 TCGA-FW-A3R5-06 7 99566032 99566032 C T AZGP1 Missense_Mutation p.R120K 0.09 tolerated(0.45) probably_damaging(0.936) TCGA-FW-A3R5-06 7 99580912 99580912 G A AZGP1P1 RNA 0.38 TCGA-FW-A3R5-06 7 99631479 99631479 C T ZKSCAN1 Missense_Mutation p.H451Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 7 99655367 99655367 C T ZSCAN21 Missense_Mutation p.S149F 0.31 deleterious(0) possibly_damaging(0.627) TCGA-FW-A3R5-06 7 99758461 99758461 G A GAL3ST4 Missense_Mutation p.S184F 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 7 99917221 99917221 G A SPDYE3 Silent p.E460E 0.35 TCGA-FW-A3R5-06 7 99917408 99917408 G A SPDYE3 Missense_Mutation p.V523I 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-FW-A3R5-06 7 99956641 99956641 C T PILRB Silent p.T131T 0.35 TCGA-FW-A3R5-06 7 99999541 99999541 C T ZCWPW1 Missense_Mutation p.G532D 0.29 tolerated(0.28) benign(0.037) TCGA-FW-A3R5-06 8 100127991 100127991 C T VPS13B Missense_Mutation p.R276C 0.10 deleterious(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 8 100523597 100523597 C T VPS13B Missense_Mutation p.T1522I 0.22 tolerated(0.09) benign(0.026) TCGA-FW-A3R5-06 8 100796698 100796698 C T VPS13B Silent p.S2670S 0.18 TCGA-FW-A3R5-06 8 100821706 100821706 G A VPS13B Missense_Mutation p.R2707Q 0.37 tolerated(0.4) possibly_damaging(0.553) TCGA-FW-A3R5-06 8 100831085 100831085 G A VPS13B Missense_Mutation p.D2889N 0.23 tolerated(0.12) possibly_damaging(0.539) TCGA-FW-A3R5-06 8 101016248 101016248 G A RGS22 Missense_Mutation p.P845S 0.26 tolerated(0.06) probably_damaging(0.93) TCGA-FW-A3R5-06 8 101018320 101018320 T A RGS22 Missense_Mutation p.E793D 0.27 deleterious(0.03) benign(0.038) TCGA-FW-A3R5-06 8 101051255 101051255 C T RGS22 Nonsense_Mutation p.W690* 0.25 TCGA-FW-A3R5-06 8 101092443 101092443 C T RGS22 Silent p.R86R 0.33 TCGA-FW-A3R5-06 8 101153442 101153442 G A FBXO43 Missense_Mutation p.S347F 0.30 tolerated(0.06) benign(0.157) TCGA-FW-A3R5-06 8 101178079 101178079 T A SPAG1 Missense_Mutation p.F60I 0.22 deleterious(0) possibly_damaging(0.642) TCGA-FW-A3R5-06 8 101206358 101206358 G A SPAG1 Missense_Mutation p.E320K 0.16 deleterious(0.04) possibly_damaging(0.871) TCGA-FW-A3R5-06 8 101206519 101206519 G A SPAG1 Intron 0.19 TCGA-FW-A3R5-06 8 101276378 101276378 G A RNF19A Missense_Mutation p.P451L 0.48 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 8 101562944 101562944 G A ANKRD46 Intron 0.56 TCGA-FW-A3R5-06 8 101608912 101608912 G A SNX31 Silent p.I311I 0.21 TCGA-FW-A3R5-06 8 101609053 101609053 C T SNX31 Silent p.R264R 0.27 TCGA-FW-A3R5-06 8 101624234 101624234 C T SNX31 Missense_Mutation p.R202Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 8 101718929 101718929 G A PABPC1 Missense_Mutation p.R518C 0.33 tolerated(0.1) benign(0.016) TCGA-FW-A3R5-06 8 102585936 102585936 C T GRHL2 Missense_Mutation p.R259C 0.23 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 8 102589725 102589725 G A GRHL2 Silent p.A327A 0.10 TCGA-FW-A3R5-06 8 102611376 102611376 G A GRHL2 Silent p.A365A 0.33 TCGA-FW-A3R5-06 8 102731543 102731543 G A NCALD Silent p.F105F 0.26 TCGA-FW-A3R5-06 8 103307750 103307750 G A UBR5 Missense_Mutation p.L1275F 0.33 deleterious(0) benign(0.1) TCGA-FW-A3R5-06 8 103564014 103564014 G A ODF1 Missense_Mutation p.R20K 0.10 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-FW-A3R5-06 8 103564043 103564043 G A ODF1 Missense_Mutation p.E30K 0.27 deleterious_low_confidence(0.05) possibly_damaging(0.905) TCGA-FW-A3R5-06 8 10383139 10383139 G A PRSS55 Missense_Mutation p.G15E 0.28 tolerated(0.27) probably_damaging(0.931) TCGA-FW-A3R5-06 8 10387029 10387029 G A PRSS55 Missense_Mutation p.R56K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 8 104337524 104337524 G A FZD6 Missense_Mutation p.R397Q 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 104412716 104412716 G A SLC25A32 Missense_Mutation p.P291S 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 104432603 104432603 C T DCAF13 Missense_Mutation p.S213L 0.35 deleterious(0) possibly_damaging(0.703) TCGA-FW-A3R5-06 8 10464881 10464881 C T RP1L1 Missense_Mutation p.G2243R 0.22 unknown(0) TCGA-FW-A3R5-06 8 10465377 10465377 C T RP1L1 Silent p.E2077E 0.09 TCGA-FW-A3R5-06 8 10466660 10466660 C T RP1L1 Missense_Mutation p.E1650K 0.22 unknown(0) TCGA-FW-A3R5-06 8 10467212 10467212 C T RP1L1 Missense_Mutation p.E1466K 0.32 unknown(0) TCGA-FW-A3R5-06 8 10467458 10467458 C T RP1L1 Missense_Mutation p.G1384R 0.25 unknown(0) TCGA-FW-A3R5-06 8 10467747 10467747 C T RP1L1 Silent p.S1287S 0.10 TCGA-FW-A3R5-06 8 10468287 10468287 C T RP1L1 Missense_Mutation p.M1107I 0.18 benign(0.002) TCGA-FW-A3R5-06 8 10468807 10468807 G A RP1L1 Missense_Mutation p.P934L 0.28 benign(0.001) TCGA-FW-A3R5-06 8 10469108 10469108 C T RP1L1 Missense_Mutation p.A834T 0.40 benign(0.031) TCGA-FW-A3R5-06 8 10469264 10469264 C T RP1L1 Missense_Mutation p.D782N 0.13 benign(0.02) TCGA-FW-A3R5-06 8 10469482 10469482 G A RP1L1 Missense_Mutation p.S709L 0.27 benign(0.015) TCGA-FW-A3R5-06 8 10470832 10470832 G A RP1L1 Missense_Mutation p.P259L 0.30 possibly_damaging(0.801) TCGA-FW-A3R5-06 8 104709366 104709366 G A RIMS2 Missense_Mutation p.E77K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-FW-A3R5-06 8 104778670 104778670 G A RIMS2 Silent p.V201V 0.17 TCGA-FW-A3R5-06 8 10480303 10480303 C T RP1L1 Missense_Mutation p.E137K 0.33 probably_damaging(0.992) TCGA-FW-A3R5-06 8 10480586 10480586 C T RP1L1 Silent p.G42G 0.33 TCGA-FW-A3R5-06 8 104898241 104898241 G A RIMS2 Missense_Mutation p.E472K 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.693) TCGA-FW-A3R5-06 8 104948865 104948865 G A RIMS2 Missense_Mutation p.R821Q 0.23 tolerated_low_confidence(0.07) benign(0.396) TCGA-FW-A3R5-06 8 104948883 104948883 G A RIMS2 Missense_Mutation p.R827Q 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3R5-06 8 105010414 105010414 C T RIMS2 Intron 0.33 TCGA-FW-A3R5-06 8 105026744 105026744 C T RIMS2 Missense_Mutation p.R1079C 0.20 deleterious_low_confidence(0) benign(0.008) TCGA-FW-A3R5-06 8 105105720 105105720 C T RIMS2 Intron 0.30 TCGA-FW-A3R5-06 8 105161027 105161027 C T RIMS2 Intron 0.30 TCGA-FW-A3R5-06 8 105261008 105261008 G A RIMS2 Missense_Mutation p.V1186M 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FW-A3R5-06 8 105367139 105367139 C T DCSTAMP Missense_Mutation p.S355F 0.27 tolerated(0.1) benign(0.278) TCGA-FW-A3R5-06 8 105459626 105459626 C T DPYS Missense_Mutation p.E177K 0.20 tolerated(0.12) benign(0.003) TCGA-FW-A3R5-06 8 105509965 105509965 G A LRP12 Missense_Mutation p.S272F 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 10555134 10555134 G A C8orf74 Silent p.T89T 0.08 TCGA-FW-A3R5-06 8 10583561 10583561 G A SOX7 Missense_Mutation p.S337F 0.34 tolerated(0.18) possibly_damaging(0.739) TCGA-FW-A3R5-06 8 10583582 10583582 G A SOX7 Missense_Mutation p.P330L 0.33 tolerated(0.09) possibly_damaging(0.863) TCGA-FW-A3R5-06 8 106431439 106431439 C T ZFPM2 Silent p.S36S 0.18 TCGA-FW-A3R5-06 8 106431506 106431506 G A ZFPM2 Missense_Mutation p.E59K 0.20 deleterious(0.05) benign(0.046) TCGA-FW-A3R5-06 8 106456510 106456510 G A ZFPM2 Missense_Mutation p.D68N 0.25 tolerated(0.23) benign(0.004) TCGA-FW-A3R5-06 8 106813462 106813462 C T ZFPM2 Silent p.L384L 0.14 TCGA-FW-A3R5-06 8 106813468 106813468 C T ZFPM2 Silent p.V386V 0.38 TCGA-FW-A3R5-06 8 106813469 106813469 C T ZFPM2 Missense_Mutation p.P387S 0.39 tolerated(0.96) benign(0) TCGA-FW-A3R5-06 8 106813932 106813932 G A ZFPM2 Missense_Mutation p.S541N 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 8 106814304 106814304 G A ZFPM2 Missense_Mutation p.G665E 0.21 tolerated(0.1) probably_damaging(0.922) TCGA-FW-A3R5-06 8 106814408 106814408 G A ZFPM2 Missense_Mutation p.E700K 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 8 106814675 106814675 G A ZFPM2 Missense_Mutation p.D789N 0.32 tolerated(0.3) benign(0.029) TCGA-FW-A3R5-06 8 106815131 106815131 G A ZFPM2 Missense_Mutation p.G941S 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.813) TCGA-FW-A3R5-06 8 106815176 106815176 G A ZFPM2 Missense_Mutation p.E956K 0.17 tolerated(0.2) possibly_damaging(0.585) TCGA-FW-A3R5-06 8 106815429 106815429 G A ZFPM2 Missense_Mutation p.G1040E 0.12 deleterious(0.02) probably_damaging(0.937) TCGA-FW-A3R5-06 8 106815501 106815501 C T ZFPM2 Missense_Mutation p.S1064F 0.23 tolerated(0.12) benign(0.429) TCGA-FW-A3R5-06 8 10755639 10755639 G A XKR6 Silent p.P583P 0.23 TCGA-FW-A3R5-06 8 10756116 10756116 G A XKR6 Silent p.I424I 0.36 TCGA-FW-A3R5-06 8 10756197 10756197 C T XKR6 Missense_Mutation p.M397I 0.10 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 8 107773266 107773266 C T ABRA Silent p.%3D 0.32 TCGA-FW-A3R5-06 8 107782025 107782025 C T ABRA Missense_Mutation p.E132K 0.32 tolerated(0.31) benign(0.026) TCGA-FW-A3R5-06 8 10782145 10782145 G A XKR6 Silent p.P320P 0.11 TCGA-FW-A3R5-06 8 108297011 108297011 C T ANGPT1 Silent p.Q368Q 0.22 TCGA-FW-A3R5-06 8 108315553 108315553 C T ANGPT1 Missense_Mutation p.R284K 0.31 tolerated(0.3) benign(0.004) TCGA-FW-A3R5-06 8 108348406 108348406 C T ANGPT1 Missense_Mutation p.E183K 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-FW-A3R5-06 8 108913185 108913185 G A RSPO2 3'UTR 0.24 TCGA-FW-A3R5-06 8 108913186 108913186 G A RSPO2 3'UTR 0.23 TCGA-FW-A3R5-06 8 108970464 108970464 C T RSPO2 Missense_Mutation p.G154R 0.27 deleterious(0) probably_damaging(0.943) TCGA-FW-A3R5-06 8 109001422 109001422 C T RSPO2 Missense_Mutation p.D49N 0.29 deleterious(0.01) possibly_damaging(0.804) TCGA-FW-A3R5-06 8 109498750 109498750 C T EMC2 Nonsense_Mutation p.R273* 0.28 TCGA-FW-A3R5-06 8 109796390 109796390 C T TMEM74 3'UTR 0.40 TCGA-FW-A3R5-06 8 109797140 109797140 G A TMEM74 Missense_Mutation p.S63F 0.08 tolerated(0.22) possibly_damaging(0.798) TCGA-FW-A3R5-06 8 109797285 109797285 G A TMEM74 Missense_Mutation p.L15F 0.20 tolerated(0.1) possibly_damaging(0.467) TCGA-FW-A3R5-06 8 109797361 109797361 G A TMEM74 5'UTR 0.13 TCGA-FW-A3R5-06 8 110100010 110100010 C T TRHR Missense_Mutation p.S90F 0.17 tolerated(0.17) benign(0.052) TCGA-FW-A3R5-06 8 110100085 110100085 C T TRHR Missense_Mutation p.S115L 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 110355796 110355796 C T ENY2 3'UTR 0.30 TCGA-FW-A3R5-06 8 110413787 110413787 C T PKHD1L1 Missense_Mutation p.S448L 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 110420301 110420301 G A PKHD1L1 Missense_Mutation p.E613K 0.34 tolerated(0.08) probably_damaging(0.982) TCGA-FW-A3R5-06 8 110439312 110439312 G A PKHD1L1 Missense_Mutation p.R976Q 0.14 deleterious(0.03) benign(0.005) TCGA-FW-A3R5-06 8 110439352 110439352 G A PKHD1L1 Nonsense_Mutation p.W989* 0.31 TCGA-FW-A3R5-06 8 110439377 110439377 C T PKHD1L1 Missense_Mutation p.L998F 0.38 deleterious(0.03) benign(0.319) TCGA-FW-A3R5-06 8 110441668 110441668 C T PKHD1L1 Missense_Mutation p.R1034C 0.21 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 8 110448612 110448612 C T PKHD1L1 Missense_Mutation p.S1184L 0.28 deleterious(0.04) possibly_damaging(0.889) TCGA-FW-A3R5-06 8 110452971 110452971 T C PKHD1L1 Missense_Mutation p.L1330S 0.20 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 8 110456078 110456078 G A PKHD1L1 Missense_Mutation p.E1580K 0.42 tolerated(0.1) possibly_damaging(0.831) TCGA-FW-A3R5-06 8 110457509 110457509 C T PKHD1L1 Missense_Mutation p.P1804L 0.28 tolerated(0.13) benign(0.155) TCGA-FW-A3R5-06 8 110463245 110463245 G A PKHD1L1 Missense_Mutation p.G2073R 0.26 deleterious(0.05) possibly_damaging(0.764) TCGA-FW-A3R5-06 8 110464387 110464387 G A PKHD1L1 Missense_Mutation p.E2129K 0.38 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 8 110474031 110474031 G A PKHD1L1 Missense_Mutation p.G2426E 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 110476877 110476877 G A PKHD1L1 Missense_Mutation p.V2606I 0.12 tolerated(0.24) benign(0.003) TCGA-FW-A3R5-06 8 110477422 110477422 C T PKHD1L1 Silent p.G2787G 0.36 TCGA-FW-A3R5-06 8 110477426 110477426 C T PKHD1L1 Missense_Mutation p.R2789C 0.35 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 8 110478892 110478892 C T PKHD1L1 Silent p.F2833F 0.25 TCGA-FW-A3R5-06 8 110489536 110489536 C T PKHD1L1 Silent p.F3000F 0.22 TCGA-FW-A3R5-06 8 110489561 110489561 G A PKHD1L1 Missense_Mutation p.D3009N 0.24 tolerated(0.24) benign(0.006) TCGA-FW-A3R5-06 8 110493734 110493734 C T PKHD1L1 Missense_Mutation p.H3134Y 0.25 deleterious(0.03) possibly_damaging(0.828) TCGA-FW-A3R5-06 8 110530483 110530483 G A PKHD1L1 Missense_Mutation p.G3926E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 110535020 110535020 G A PKHD1L1 Silent p.V4077V 0.23 TCGA-FW-A3R5-06 8 110535021 110535021 G A PKHD1L1 Missense_Mutation p.A4078T 0.24 deleterious(0.03) probably_damaging(0.909) TCGA-FW-A3R5-06 8 110980464 110980464 C T KCNV1 Silent p.K452K 0.27 TCGA-FW-A3R5-06 8 11177074 11177074 C T MTMR9 Intron 0.30 TCGA-FW-A3R5-06 8 113241079 113241079 G A CSMD3 Missense_Mutation p.H3624Y 0.33 tolerated(0.36) benign(0.424) TCGA-FW-A3R5-06 8 113243788 113243788 C T CSMD3 Missense_Mutation p.G3605D 0.18 deleterious(0.04) possibly_damaging(0.549) TCGA-FW-A3R5-06 8 113275932 113275932 G A CSMD3 Silent p.S3266S 0.26 TCGA-FW-A3R5-06 8 113303820 113303820 G A CSMD3 Missense_Mutation p.P2965S 0.18 tolerated(0.56) probably_damaging(0.948) TCGA-FW-A3R5-06 8 113353798 113353798 G A CSMD3 Missense_Mutation p.P2187L 0.25 deleterious(0) possibly_damaging(0.515) TCGA-FW-A3R5-06 8 113418951 113418951 G A CSMD3 Missense_Mutation p.P1871S 0.41 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 8 113421178 113421178 G A CSMD3 Silent p.L1827L 0.22 TCGA-FW-A3R5-06 8 113519003 113519003 G A CSMD3 Silent p.F1604F 0.18 TCGA-FW-A3R5-06 8 113649088 113649088 C T CSMD3 Missense_Mutation p.G1225S 0.24 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 8 113933979 113933979 G A CSMD3 Missense_Mutation p.L504F 0.23 deleterious(0.02) possibly_damaging(0.673) TCGA-FW-A3R5-06 8 11400787 11400787 G A BLK Silent p.K18K 0.24 TCGA-FW-A3R5-06 8 114111003 114111003 G A CSMD3 Missense_Mutation p.S300F 0.15 deleterious(0.02) possibly_damaging(0.786) TCGA-FW-A3R5-06 8 114111043 114111043 G A CSMD3 Nonsense_Mutation p.Q287* 0.20 TCGA-FW-A3R5-06 8 11414274 11414274 G A BLK Missense_Mutation p.E294K 0.24 tolerated(0.13) benign(0.004) TCGA-FW-A3R5-06 8 114185980 114185980 G A CSMD3 Missense_Mutation p.S227L 0.11 tolerated(0.37) benign(0.034) TCGA-FW-A3R5-06 8 114290845 114290845 G A CSMD3 Missense_Mutation p.H164Y 0.20 tolerated(0.1) benign(0.003) TCGA-FW-A3R5-06 8 114290925 114290925 C T CSMD3 Missense_Mutation p.G137E 0.20 deleterious(0) benign(0.393) TCGA-FW-A3R5-06 8 114389107 114389107 G A CSMD3 Intron 0.23 TCGA-FW-A3R5-06 8 116631459 116631459 G T TRPS1 Missense_Mutation p.S289Y 0.42 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-FW-A3R5-06 8 117768060 117768060 G A EIF3H 5'UTR 0.30 TCGA-FW-A3R5-06 8 117859613 117859613 G A RAD21 3'UTR 0.17 TCGA-FW-A3R5-06 8 117950651 117950651 G A AARD Missense_Mutation p.E57K 0.26 deleterious(0.01) possibly_damaging(0.801) TCGA-FW-A3R5-06 8 117954928 117954928 G A AARD Silent p.A152A 0.20 TCGA-FW-A3R5-06 8 118147569 118147569 G A SLC30A8 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FW-A3R5-06 8 118147626 118147626 C T SLC30A8 Silent p.F20F 0.20 TCGA-FW-A3R5-06 8 118165285 118165285 C T SLC30A8 Missense_Mutation p.S125L 0.29 deleterious(0) possibly_damaging(0.801) TCGA-FW-A3R5-06 8 118819608 118819608 G A EXT1 Silent p.F577F 0.24 TCGA-FW-A3R5-06 8 119209907 119209907 C T SAMD12 3'UTR 0.09 TCGA-FW-A3R5-06 8 119391794 119391794 G A SAMD12 Silent p.T156T 0.22 TCGA-FW-A3R5-06 8 119945434 119945434 G A TNFRSF11B Missense_Mutation p.P46S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 11994845 11994845 C T USP17L2 Missense_Mutation p.M475I 0.62 tolerated(0.21) benign(0.006) TCGA-FW-A3R5-06 8 120101930 120101930 G A COLEC10 Missense_Mutation p.E54K 0.30 deleterious(0.03) benign(0.226) TCGA-FW-A3R5-06 8 120103399 120103399 G A COLEC10 Missense_Mutation p.E78K 0.09 tolerated(0.15) benign(0.01) TCGA-FW-A3R5-06 8 120118460 120118460 C T COLEC10 3'UTR 0.20 TCGA-FW-A3R5-06 8 12042898 12042898 G A FAM86B1 Silent p.F259F 0.28 TCGA-FW-A3R5-06 8 12044027 12044027 C T FAM86B1 Silent p.R158R 0.21 TCGA-FW-A3R5-06 8 120809247 120809247 G A TAF2 Silent p.F358F 0.22 TCGA-FW-A3R5-06 8 121013894 121013894 C T DEPTOR Silent p.P245P 0.19 TCGA-FW-A3R5-06 8 121228689 121228689 G A COL14A1 Missense_Mutation p.R566Q 0.29 deleterious(0.02) probably_damaging(0.935) TCGA-FW-A3R5-06 8 121262978 121262978 G A COL14A1 Missense_Mutation p.D909N 0.18 tolerated(0.32) possibly_damaging(0.662) TCGA-FW-A3R5-06 8 121279119 121279119 G A COL14A1 Missense_Mutation p.E1024K 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-FW-A3R5-06 8 121290766 121290766 G A COL14A1 Missense_Mutation p.G1144R 0.30 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 8 121293253 121293253 C T COL14A1 Missense_Mutation p.P1260L 0.17 deleterious(0.04) benign(0.14) TCGA-FW-A3R5-06 8 121301912 121301912 G A COL14A1 Silent p.K1381K 0.35 TCGA-FW-A3R5-06 8 121326189 121326189 G A COL14A1 Missense_Mutation p.G1492S 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 121328208 121328208 C T COL14A1 Missense_Mutation p.P1544L 0.23 tolerated(0.28) probably_damaging(1) TCGA-FW-A3R5-06 8 121344402 121344402 C T COL14A1 Missense_Mutation p.S1561F 0.29 deleterious(0) benign(0.006) TCGA-FW-A3R5-06 8 121379469 121379469 G A COL14A1 Missense_Mutation p.G1713S 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 121381702 121381702 A C COL14A1 Silent p.S1763S 0.21 TCGA-FW-A3R5-06 8 121383391 121383391 C T COL14A1 Missense_Mutation p.A1771V 0.08 tolerated(0.49) benign(0.003) TCGA-FW-A3R5-06 8 121561077 121561077 C T SNTB1 Missense_Mutation p.D420N 0.20 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 8 121823712 121823712 C T SNTB1 Silent p.G124G 0.31 TCGA-FW-A3R5-06 8 122641360 122641360 G A HAS2 Missense_Mutation p.S74F 0.25 tolerated(0.06) benign(0.056) TCGA-FW-A3R5-06 8 123966241 123966241 C T ZHX2 Missense_Mutation p.P831S 0.18 tolerated_low_confidence(0.54) benign(0.001) TCGA-FW-A3R5-06 8 124034951 124034951 T A DERL1 Silent p.V142V 0.15 TCGA-FW-A3R5-06 8 124195392 124195392 C T FAM83A Missense_Mutation p.S99F 0.09 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 8 124206289 124206289 G A FAM83A Missense_Mutation p.G225E 0.12 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 8 124219654 124219654 C T FAM83A Missense_Mutation p.P344L 0.26 tolerated(0.19) benign(0.118) TCGA-FW-A3R5-06 8 124371873 124371873 G A ATAD2 Nonsense_Mutation p.R404* 0.16 TCGA-FW-A3R5-06 8 124381320 124381320 G A ATAD2 Missense_Mutation p.P343S 0.32 tolerated(0.16) benign(0.196) TCGA-FW-A3R5-06 8 124413058 124413058 G A ATAD2 5'Flank 0.09 TCGA-FW-A3R5-06 8 124553147 124553147 G A FBXO32 Silent p.D36D 0.31 TCGA-FW-A3R5-06 8 124664732 124664732 G A KLHL38 Silent p.I145I 0.27 TCGA-FW-A3R5-06 8 124982286 124982286 C T FER1L6 Silent p.F132F 0.27 TCGA-FW-A3R5-06 8 124988179 124988179 G A FER1L6 Nonsense_Mutation p.W242* 0.35 TCGA-FW-A3R5-06 8 124988220 124988220 C T FER1L6 Missense_Mutation p.P256S 0.20 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 124989729 124989729 C T FER1L6 Missense_Mutation p.P315S 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 124989840 124989840 G A FER1L6 Missense_Mutation p.G352R 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 125015581 125015581 G A FER1L6 Missense_Mutation p.G565E 0.20 tolerated(0.13) probably_damaging(0.998) TCGA-FW-A3R5-06 8 125025715 125025715 G A FER1L6 Silent p.Q622Q 0.31 TCGA-FW-A3R5-06 8 125081671 125081671 G A FER1L6 Silent p.K1263K 0.25 TCGA-FW-A3R5-06 8 125083791 125083791 G A FER1L6 Silent p.E1337E 0.29 TCGA-FW-A3R5-06 8 125083792 125083792 G A FER1L6 Missense_Mutation p.D1338N 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 8 125094666 125094666 G A FER1L6 Missense_Mutation p.R1453Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 125103744 125103744 G A FER1L6 Missense_Mutation p.G1491E 0.37 tolerated(0.08) benign(0.082) TCGA-FW-A3R5-06 8 125109512 125109512 G A FER1L6 Missense_Mutation p.G1566S 0.08 deleterious(0) probably_damaging(0.939) TCGA-FW-A3R5-06 8 125131980 125131980 C T FER1L6 Silent p.F1841F 0.20 TCGA-FW-A3R5-06 8 125332403 125332403 G A TMEM65 Missense_Mutation p.S182F 0.42 tolerated(0.1) possibly_damaging(0.854) TCGA-FW-A3R5-06 8 125565696 125565696 C T MTSS1 Missense_Mutation p.G602E 0.33 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 8 125989084 125989084 G A ZNF572 Missense_Mutation p.E192K 0.34 deleterious(0.04) benign(0.056) TCGA-FW-A3R5-06 8 125989806 125989806 G A ZNF572 Silent p.R432R 0.33 TCGA-FW-A3R5-06 8 126015634 126015634 G A SQLE Missense_Mutation p.G170S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 126051160 126051160 G A KIAA0196 Missense_Mutation p.S999L 0.15 deleterious(0.04) benign(0.004) TCGA-FW-A3R5-06 8 126062903 126062903 T C KIAA0196 Missense_Mutation p.D701G 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 126091028 126091028 G A KIAA0196 Silent p.F221F 0.27 TCGA-FW-A3R5-06 8 126379142 126379142 C T NSMCE2 3'UTR 0.13 TCGA-FW-A3R5-06 8 128428286 128428286 G A POU5F1B Missense_Mutation p.G59R 0.18 tolerated(0.07) possibly_damaging(0.842) TCGA-FW-A3R5-06 8 128428313 128428313 G A POU5F1B Missense_Mutation p.E68K 0.38 tolerated(0.12) possibly_damaging(0.488) TCGA-FW-A3R5-06 8 128750684 128750684 C T MYC Missense_Mutation p.P74L 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 128753244 128753244 C T MYC 3'UTR 0.24 TCGA-FW-A3R5-06 8 12947771 12947771 G A DLC1 Missense_Mutation p.S1355F 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-FW-A3R5-06 8 12958036 12958036 G A DLC1 Missense_Mutation p.P604S 0.11 tolerated(0.37) benign(0.044) TCGA-FW-A3R5-06 8 13072094 13072094 G A DLC1 Intron 0.34 TCGA-FW-A3R5-06 8 130763803 130763803 C T GSDMC Missense_Mutation p.E310K 0.29 tolerated(0.37) benign(0.133) TCGA-FW-A3R5-06 8 130765006 130765006 G A GSDMC Missense_Mutation p.S261L 0.09 tolerated(0.29) benign(0.014) TCGA-FW-A3R5-06 8 130778016 130778016 G A GSDMC Missense_Mutation p.S143L 0.29 tolerated(0.57) benign(0.026) TCGA-FW-A3R5-06 8 130788431 130788431 C T GSDMC Silent p.G107G 0.18 TCGA-FW-A3R5-06 8 130789654 130789654 G A GSDMC Silent p.F60F 0.29 TCGA-FW-A3R5-06 8 130789705 130789705 C T GSDMC Silent p.K43K 0.31 TCGA-FW-A3R5-06 8 131072886 131072886 G A ASAP1 Missense_Mutation p.S1044F 0.11 deleterious(0) possibly_damaging(0.898) TCGA-FW-A3R5-06 8 131792787 131792787 G A ADCY8 Missense_Mutation p.S1202F 0.41 deleterious(0) benign(0.173) TCGA-FW-A3R5-06 8 131792974 131792974 G A ADCY8 Silent p.L1140L 0.36 TCGA-FW-A3R5-06 8 131792975 131792975 G A ADCY8 Silent p.I1139I 0.35 TCGA-FW-A3R5-06 8 131848526 131848526 C T ADCY8 Missense_Mutation p.G891E 0.14 tolerated(1) benign(0.134) TCGA-FW-A3R5-06 8 131859669 131859669 C T ADCY8 Splice_Site p.X834_splice 0.38 TCGA-FW-A3R5-06 8 131916027 131916027 C T ADCY8 Silent p.G634G 0.23 TCGA-FW-A3R5-06 8 131921984 131921984 G A ADCY8 Missense_Mutation p.A537V 0.34 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 8 131922087 131922087 C T ADCY8 Missense_Mutation p.D503N 0.15 tolerated(0.13) possibly_damaging(0.6) TCGA-FW-A3R5-06 8 132952778 132952778 C T EFR3A Missense_Mutation p.R15C 0.48 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 133044138 133044138 C T OC90 Missense_Mutation p.D341N 0.38 tolerated(0.05) benign(0.001) TCGA-FW-A3R5-06 8 133051060 133051060 T A OC90 Missense_Mutation p.D202V 0.29 tolerated(0.09) benign(0.004) TCGA-FW-A3R5-06 8 133051061 133051061 C T OC90 Missense_Mutation p.D202N 0.29 tolerated(0.07) benign(0.066) TCGA-FW-A3R5-06 8 133053934 133053934 G A OC90 Missense_Mutation p.P61L 0.33 deleterious(0.01) benign(0.156) TCGA-FW-A3R5-06 8 133053935 133053935 G A OC90 Missense_Mutation p.P61S 0.33 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 8 133141509 133141509 T G KCNQ3 Nonstop_Mutation p.*873Yext*10 0.20 TCGA-FW-A3R5-06 8 133141525 133141525 G A KCNQ3 Missense_Mutation p.S868F 0.08 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-FW-A3R5-06 8 133141902 133141902 C T KCNQ3 Silent p.V742V 0.38 TCGA-FW-A3R5-06 8 133150166 133150166 C T KCNQ3 Missense_Mutation p.D556N 0.16 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 8 133152366 133152366 C T KCNQ3 Missense_Mutation p.E509K 0.23 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 133196570 133196570 C T KCNQ3 Silent p.R174R 0.30 TCGA-FW-A3R5-06 8 13357153 13357153 C T DLC1 Missense_Mutation p.G143E 0.34 deleterious_low_confidence(0) benign(0.292) TCGA-FW-A3R5-06 8 133584518 133584518 G A LRRC6 3'UTR 0.21 TCGA-FW-A3R5-06 8 133650208 133650208 G A LRRC6 Silent p.F134F 0.19 TCGA-FW-A3R5-06 8 133734298 133734298 G A TMEM71 Missense_Mutation p.S228F 0.14 tolerated(0.05) benign(0.052) TCGA-FW-A3R5-06 8 133811053 133811053 C T PHF20L1 Missense_Mutation p.R126C 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 133883780 133883780 G A TG Silent p.L154L 0.40 TCGA-FW-A3R5-06 8 133894781 133894781 C T TG Silent p.F271F 0.08 TCGA-FW-A3R5-06 8 133895173 133895173 C T TG Missense_Mutation p.P335L 0.36 tolerated(0.57) benign(0.034) TCGA-FW-A3R5-06 8 133899584 133899584 C T TG Missense_Mutation p.P656L 0.26 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 8 133899646 133899646 C T TG Missense_Mutation p.P677S 0.23 tolerated(0.18) probably_damaging(0.936) TCGA-FW-A3R5-06 8 133900607 133900607 G A TG Missense_Mutation p.G852E 0.24 deleterious(0) possibly_damaging(0.856) TCGA-FW-A3R5-06 8 133900636 133900636 C T TG Missense_Mutation p.L862F 0.21 tolerated(0.2) benign(0.025) TCGA-FW-A3R5-06 8 133948017 133948017 G A TG Missense_Mutation p.G1650E 0.25 deleterious(0.02) benign(0.263) TCGA-FW-A3R5-06 8 133984069 133984069 G A TG Silent p.A2002A 0.20 TCGA-FW-A3R5-06 8 134057256 134057256 G A SLA Silent p.L193L 0.25 TCGA-FW-A3R5-06 8 134108468 134108468 C T TG Missense_Mutation p.P2475S 0.33 deleterious(0) possibly_damaging(0.72) TCGA-FW-A3R5-06 8 134125725 134125725 G A TG Silent p.Q2544Q 0.23 TCGA-FW-A3R5-06 8 134125730 134125730 C T TG Missense_Mutation p.S2546F 0.28 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3R5-06 8 134144055 134144055 G A TG Splice_Site p.X2621_splice 0.14 TCGA-FW-A3R5-06 8 134232995 134232995 G A WISP1 Missense_Mutation p.S174N 0.24 tolerated(0.3) benign(0.005) TCGA-FW-A3R5-06 8 134261013 134261013 G A NDRG1 Missense_Mutation p.R234W 0.10 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 8 134472027 134472027 G A ST3GAL1 Missense_Mutation p.R335W 0.07 probably_damaging(0.924) TCGA-FW-A3R5-06 8 134488296 134488296 G A ST3GAL1 5'UTR 0.18 TCGA-FW-A3R5-06 8 135612512 135612512 G A ZFAT Intron 0.27 TCGA-FW-A3R5-06 8 139151280 139151280 C T FAM135B Missense_Mutation p.D1284N 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 139158244 139158244 G A FAM135B Silent p.L1166L 0.30 TCGA-FW-A3R5-06 8 139164131 139164131 G A FAM135B Missense_Mutation p.P863S 0.09 tolerated(0.56) benign(0) TCGA-FW-A3R5-06 8 139164320 139164320 C T FAM135B Missense_Mutation p.D800N 0.12 tolerated_low_confidence(0.24) benign(0.07) TCGA-FW-A3R5-06 8 139164584 139164584 C T FAM135B Missense_Mutation p.E712K 0.24 deleterious(0.01) possibly_damaging(0.735) TCGA-FW-A3R5-06 8 139164679 139164679 G A FAM135B Missense_Mutation p.S680L 0.09 deleterious(0) possibly_damaging(0.662) TCGA-FW-A3R5-06 8 139165459 139165459 C T FAM135B Missense_Mutation p.G420E 0.23 tolerated(0.06) possibly_damaging(0.835) TCGA-FW-A3R5-06 8 139263219 139263219 C T FAM135B Missense_Mutation p.R136Q 0.30 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 8 139277969 139277969 G A FAM135B Missense_Mutation p.H92Y 0.28 deleterious(0) benign(0.183) TCGA-FW-A3R5-06 8 13959964 13959964 C T SGCZ Missense_Mutation p.G222E 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 139601552 139601552 G A COL22A1 Nonsense_Mutation p.Q1609* 0.24 TCGA-FW-A3R5-06 8 139629193 139629193 C T COL22A1 Silent p.K1278K 0.18 TCGA-FW-A3R5-06 8 139727966 139727966 C T COL22A1 Missense_Mutation p.E826K 0.22 possibly_damaging(0.661) TCGA-FW-A3R5-06 8 139838948 139838948 C T COL22A1 Missense_Mutation p.E308K 0.35 unknown(0) TCGA-FW-A3R5-06 8 139839014 139839014 G A COL22A1 Missense_Mutation p.P286S 0.11 unknown(0) TCGA-FW-A3R5-06 8 139890104 139890104 C T COL22A1 Missense_Mutation p.E183K 0.30 unknown(0) TCGA-FW-A3R5-06 8 139890497 139890497 C T COL22A1 Missense_Mutation p.E52K 0.25 unknown(0) TCGA-FW-A3R5-06 8 14022123 14022123 C T SGCZ Silent p.E171E 0.13 TCGA-FW-A3R5-06 8 14022146 14022146 G A SGCZ Silent p.L164L 0.10 TCGA-FW-A3R5-06 8 14022150 14022150 C T SGCZ Silent p.R162R 0.32 TCGA-FW-A3R5-06 8 140630507 140630507 G A KCNK9 Silent p.S373S 0.15 TCGA-FW-A3R5-06 8 141370273 141370273 A C TRAPPC9 Silent p.A555A 0.36 TCGA-FW-A3R5-06 8 141449223 141449223 G A TRAPPC9 Nonsense_Mutation p.Q318* 0.17 TCGA-FW-A3R5-06 8 141542669 141542669 G A AGO2 Missense_Mutation p.R773C 0.31 tolerated(0.23) benign(0.003) TCGA-FW-A3R5-06 8 141675040 141675040 G A PTK2 Silent p.L987L 0.33 TCGA-FW-A3R5-06 8 142178189 142178189 C T DENND3 Missense_Mutation p.H534Y 0.10 tolerated(1) benign(0) TCGA-FW-A3R5-06 8 142186765 142186765 G A DENND3 Missense_Mutation p.E791K 0.10 tolerated(0.08) benign(0.317) TCGA-FW-A3R5-06 8 142228309 142228309 G A SLC45A4 Missense_Mutation p.T426I 0.17 deleterious(0.04) possibly_damaging(0.872) TCGA-FW-A3R5-06 8 142228673 142228673 G A SLC45A4 Silent p.L305L 0.22 TCGA-FW-A3R5-06 8 142231686 142231686 G A SLC45A4 Silent p.G89G 0.23 TCGA-FW-A3R5-06 8 142238418 142238418 G A SLC45A4 5'UTR 0.32 TCGA-FW-A3R5-06 8 142367098 142367098 C T GPR20 Missense_Mutation p.R309Q 0.12 deleterious(0.02) benign(0.077) TCGA-FW-A3R5-06 8 142446126 142446126 C A PTP4A3 3'Flank 0.15 TCGA-FW-A3R5-06 8 142458111 142458111 G A SNORD5 3'Flank 0.44 TCGA-FW-A3R5-06 8 142486068 142486068 C T MROH5 Intron 0.19 TCGA-FW-A3R5-06 8 142488856 142488856 C T MROH5 3'UTR 0.50 TCGA-FW-A3R5-06 8 142500312 142500312 C T MROH5 3'Flank 0.19 TCGA-FW-A3R5-06 8 142505555 142505555 C T MROH5 Missense_Mutation p.M62I 0.31 tolerated(0.38) benign(0.003) TCGA-FW-A3R5-06 8 143310846 143310846 C T TSNARE1 Silent p.%3D 0.25 TCGA-FW-A3R5-06 8 143560784 143560784 C T BAI1 Silent p.F554F 0.41 TCGA-FW-A3R5-06 8 143563058 143563058 C T BAI1 Missense_Mutation p.P706S 0.21 tolerated(1) possibly_damaging(0.876) TCGA-FW-A3R5-06 8 143783057 143783057 G A LY6K Missense_Mutation p.R48K 0.18 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 8 143846155 143846155 G A LYNX1 Silent p.V88V 0.29 TCGA-FW-A3R5-06 8 143867029 143867029 G A LY6D Missense_Mutation p.R43C 0.37 deleterious(0.04) possibly_damaging(0.626) TCGA-FW-A3R5-06 8 143958475 143958475 C T CYP11B1 Missense_Mutation p.D187N 0.27 tolerated(0.09) benign(0.232) TCGA-FW-A3R5-06 8 143960599 143960599 C T CYP11B1 Missense_Mutation p.D82N 0.34 tolerated(0.33) benign(0.014) TCGA-FW-A3R5-06 8 143961164 143961164 C T CYP11B1 Silent p.Q22Q 0.32 TCGA-FW-A3R5-06 8 143993291 143993291 A T CYP11B2 3'UTR 0.38 TCGA-FW-A3R5-06 8 143993426 143993426 G A CYP11B2 Silent p.S494S 0.30 TCGA-FW-A3R5-06 8 143995719 143995719 C A CYP11B2 Missense_Mutation p.K305N 0.42 deleterious(0) possibly_damaging(0.77) TCGA-FW-A3R5-06 8 143996538 143996538 C T CYP11B2 Silent p.K173K 0.14 TCGA-FW-A3R5-06 8 143999049 143999049 G A CYP11B2 Nonsense_Mutation p.Q70* 0.31 TCGA-FW-A3R5-06 8 144126132 144126132 G A C8orf31 Missense_Mutation p.D85N 0.20 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 8 144126224 144126224 G A C8orf31 Silent p.E115E 0.38 TCGA-FW-A3R5-06 8 144295145 144295145 G A GPIHBP1 Translation_Start_Site p.M1? 0.25 deleterious(0) benign(0.019) TCGA-FW-A3R5-06 8 144297308 144297308 C T GPIHBP1 Missense_Mutation p.P157L 0.23 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 8 144332487 144332487 C T ZFP41 Silent p.L158L 0.30 TCGA-FW-A3R5-06 8 144378516 144378516 C T ZNF696 Missense_Mutation p.A224V 0.27 tolerated(0.05) benign(0.072) TCGA-FW-A3R5-06 8 144408461 144408461 G A TOP1MT Silent p.F138F 0.38 TCGA-FW-A3R5-06 8 144416946 144416946 G A TOP1MT Missense_Mutation p.P29L 0.16 tolerated_low_confidence(0.07) benign(0.012) TCGA-FW-A3R5-06 8 144461624 144461624 C T RHPN1 Silent p.S297S 0.23 TCGA-FW-A3R5-06 8 144620343 144620343 G A ZC3H3 Silent p.A398A 0.22 TCGA-FW-A3R5-06 8 144621331 144621331 G A ZC3H3 Missense_Mutation p.S69L 0.23 tolerated(0.05) benign(0.006) TCGA-FW-A3R5-06 8 144732203 144732203 C T ZNF623 Missense_Mutation p.P54L 0.23 tolerated(0.73) benign(0.001) TCGA-FW-A3R5-06 8 144800391 144800391 G A MAPK15 Missense_Mutation p.D69N 0.29 tolerated(0.23) benign(0.048) TCGA-FW-A3R5-06 8 144802954 144802954 C T MAPK15 Silent p.F287F 0.13 TCGA-FW-A3R5-06 8 144810193 144810193 G A FAM83H Missense_Mutation p.R480C 0.38 deleterious(0) benign(0.064) TCGA-FW-A3R5-06 8 144875014 144875014 G A SCRIB Silent p.A1347A 0.33 TCGA-FW-A3R5-06 8 144940423 144940423 C T EPPK1 Silent p.E2333E 0.06 TCGA-FW-A3R5-06 8 144940459 144940459 G A EPPK1 Silent p.L2321L 0.05 TCGA-FW-A3R5-06 8 144940498 144940498 G A EPPK1 Silent p.T2308T 0.05 TCGA-FW-A3R5-06 8 144940762 144940762 C T EPPK1 Silent p.L2220L 0.17 TCGA-FW-A3R5-06 8 144941152 144941152 C T EPPK1 Silent p.R2090R 0.10 TCGA-FW-A3R5-06 8 144941685 144941685 G A EPPK1 Missense_Mutation p.L1913F 0.19 benign(0.007) TCGA-FW-A3R5-06 8 144942348 144942348 C T EPPK1 Missense_Mutation p.D1692N 0.31 probably_damaging(1) TCGA-FW-A3R5-06 8 144942442 144942442 C T EPPK1 Silent p.Q1660Q 0.31 TCGA-FW-A3R5-06 8 144943768 144943768 G A EPPK1 Silent p.T1218T 0.58 TCGA-FW-A3R5-06 8 144944640 144944640 C T EPPK1 Missense_Mutation p.G928S 0.19 probably_damaging(1) TCGA-FW-A3R5-06 8 144944740 144944740 C T EPPK1 Silent p.E894E 0.23 TCGA-FW-A3R5-06 8 144945144 144945144 G A EPPK1 Missense_Mutation p.P760S 0.24 probably_damaging(0.99) TCGA-FW-A3R5-06 8 144994645 144994645 G A PLEC Missense_Mutation p.S3252F 0.19 probably_damaging(0.99) TCGA-FW-A3R5-06 8 144995679 144995679 G A PLEC Silent p.A2907A 0.25 TCGA-FW-A3R5-06 8 144995895 144995895 G A PLEC Silent p.I2835I 0.20 TCGA-FW-A3R5-06 8 145001728 145001728 G A PLEC Silent p.L1339L 0.20 TCGA-FW-A3R5-06 8 145006619 145006619 G A PLEC Silent p.F779F 0.26 TCGA-FW-A3R5-06 8 145066418 145066418 C T GRINA Silent p.V233V 0.29 TCGA-FW-A3R5-06 8 145095248 145095248 C T SPATC1 Missense_Mutation p.P217L 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 8 145095669 145095669 C T SPATC1 Missense_Mutation p.P323S 0.28 deleterious(0.02) benign(0.025) TCGA-FW-A3R5-06 8 145109543 145109543 G A OPLAH Silent p.P869P 0.12 TCGA-FW-A3R5-06 8 145109544 145109544 G A OPLAH Missense_Mutation p.P869L 0.13 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 8 145109788 145109788 G A OPLAH Missense_Mutation p.P813L 0.29 deleterious(0.01) possibly_damaging(0.574) TCGA-FW-A3R5-06 8 145110780 145110780 G A OPLAH Missense_Mutation p.S720F 0.20 deleterious(0.04) benign(0.091) TCGA-FW-A3R5-06 8 145111140 145111140 C T OPLAH Missense_Mutation p.G669E 0.24 tolerated(0.18) benign(0.005) TCGA-FW-A3R5-06 8 145111880 145111880 C T OPLAH Silent p.V559V 0.30 TCGA-FW-A3R5-06 8 145114840 145114840 G A OPLAH Silent p.V32V 0.22 TCGA-FW-A3R5-06 8 145512850 145512850 C T BOP1 Missense_Mutation p.E79K 0.20 tolerated(0.52) benign(0.305) TCGA-FW-A3R5-06 8 145583638 145583638 C T SLC52A2 Silent p.A162A 0.30 TCGA-FW-A3R5-06 8 145583659 145583659 C T SLC52A2 Silent p.R169R 0.19 TCGA-FW-A3R5-06 8 145583669 145583669 C T SLC52A2 Missense_Mutation p.P173S 0.17 tolerated(0.73) benign(0.002) TCGA-FW-A3R5-06 8 145584116 145584116 C T SLC52A2 Missense_Mutation p.P322S 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 145642042 145642042 C T SLC39A4 Silent p.L44L 0.23 TCGA-FW-A3R5-06 8 145649131 145649131 G A VPS28 3'UTR 0.52 TCGA-FW-A3R5-06 8 145689438 145689438 G A CYHR1 Intron 0.30 TCGA-FW-A3R5-06 8 145692663 145692663 G A KIFC2 Silent p.G136G 0.38 TCGA-FW-A3R5-06 8 145745326 145745326 C A LRRC14 Missense_Mutation p.R73S 0.19 deleterious(0.04) possibly_damaging(0.711) TCGA-FW-A3R5-06 8 145770733 145770733 G A ARHGAP39 Silent p.L807L 0.16 TCGA-FW-A3R5-06 8 145770958 145770958 G A ARHGAP39 Silent p.I732I 0.23 TCGA-FW-A3R5-06 8 145806329 145806329 G A ARHGAP39 Missense_Mutation p.S138F 0.18 tolerated(0.06) possibly_damaging(0.857) TCGA-FW-A3R5-06 8 145947971 145947971 G A ZNF251 Silent p.F358F 0.23 TCGA-FW-A3R5-06 8 145999601 145999601 G A ZNF34 Missense_Mutation p.P245S 0.34 tolerated(0.06) benign(0.004) TCGA-FW-A3R5-06 8 146156065 146156065 G A ZNF16 3'UTR 0.23 TCGA-FW-A3R5-06 8 146156072 146156072 G A ZNF16 3'UTR 0.09 TCGA-FW-A3R5-06 8 146156154 146156154 G A ZNF16 Silent p.I673I 0.16 TCGA-FW-A3R5-06 8 14710953 14710953 C T SGCZ Intron 0.21 TCGA-FW-A3R5-06 8 1496876 1496876 G A DLGAP2 Missense_Mutation p.G6E 0.20 deleterious(0.01) benign(0.211) TCGA-FW-A3R5-06 8 1497178 1497178 C T DLGAP2 Missense_Mutation p.R107C 0.48 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 1497619 1497619 C T DLGAP2 Missense_Mutation p.P254S 0.10 tolerated(0.78) benign(0.062) TCGA-FW-A3R5-06 8 1513857 1513857 G A DLGAP2 Silent p.Q333Q 0.24 TCGA-FW-A3R5-06 8 1574994 1574994 C T DLGAP2 Missense_Mutation p.R431W 0.31 tolerated(0.17) probably_damaging(0.945) TCGA-FW-A3R5-06 8 15967531 15967531 G A MSR1 3'UTR 0.42 TCGA-FW-A3R5-06 8 15967631 15967631 G A MSR1 Missense_Mutation p.S440L 0.32 deleterious(0.03) benign(0.033) TCGA-FW-A3R5-06 8 15967683 15967683 C T MSR1 Missense_Mutation p.E423K 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 15977991 15977991 G A MSR1 Silent p.V386V 0.30 TCGA-FW-A3R5-06 8 15978098 15978098 G A MSR1 Nonsense_Mutation p.R351* 0.28 TCGA-FW-A3R5-06 8 15998354 15998354 G A MSR1 Intron 0.27 TCGA-FW-A3R5-06 8 15998357 15998357 G A MSR1 Intron 0.27 TCGA-FW-A3R5-06 8 15998404 15998404 G A MSR1 Intron 0.29 TCGA-FW-A3R5-06 8 16001112 16001112 C T MSR1 Missense_Mutation p.G330R 0.24 deleterious(0.01) probably_damaging(0.923) TCGA-FW-A3R5-06 8 16012579 16012579 G A MSR1 Missense_Mutation p.P298S 0.35 tolerated(0.51) benign(0.057) TCGA-FW-A3R5-06 8 16021577 16021577 G A MSR1 Nonsense_Mutation p.Q272* 0.32 TCGA-FW-A3R5-06 8 16026284 16026284 C T MSR1 Missense_Mutation p.E105K 0.50 tolerated(0.28) benign(0.005) TCGA-FW-A3R5-06 8 16032714 16032714 G A MSR1 Missense_Mutation p.L67F 0.07 deleterious(0.01) benign(0.187) TCGA-FW-A3R5-06 8 16032807 16032807 G A MSR1 Missense_Mutation p.P36S 0.16 tolerated(0.13) benign(0.434) TCGA-FW-A3R5-06 8 16850716 16850716 C T FGF20 Silent p.V167V 0.10 TCGA-FW-A3R5-06 8 16921710 16921710 G A MICU3 Missense_Mutation p.D167N 0.15 tolerated(0.17) probably_damaging(0.989) TCGA-FW-A3R5-06 8 16935338 16935338 C T MICU3 Missense_Mutation p.S205L 0.28 deleterious(0) benign(0.389) TCGA-FW-A3R5-06 8 16961987 16961987 G A MICU3 Missense_Mutation p.E358K 0.33 tolerated(0.15) benign(0.065) TCGA-FW-A3R5-06 8 17198950 17198950 C T MTMR7 Silent p.E218E 0.14 TCGA-FW-A3R5-06 8 17198952 17198952 C T MTMR7 Missense_Mutation p.E218K 0.21 deleterious(0.02) benign(0.015) TCGA-FW-A3R5-06 8 17230663 17230663 G A MTMR7 Silent p.F37F 0.15 TCGA-FW-A3R5-06 8 1728792 1728792 C T CLN8 3'UTR 0.29 TCGA-FW-A3R5-06 8 17412148 17412148 C T SLC7A2 Nonsense_Mutation p.Q419* 0.26 TCGA-FW-A3R5-06 8 17415876 17415876 C T SLC7A2 Missense_Mutation p.S463F 0.08 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 8 17422640 17422640 G A SLC7A2 Silent p.K694K 0.30 TCGA-FW-A3R5-06 8 17447105 17447105 C T PDGFRL Missense_Mutation p.P62S 0.16 tolerated(0.47) benign(0.002) TCGA-FW-A3R5-06 8 17507464 17507464 G A MTUS1 Missense_Mutation p.P1131L 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 17579354 17579354 G A MTUS1 Intron 0.42 TCGA-FW-A3R5-06 8 17579500 17579500 G A MTUS1 Intron 0.31 TCGA-FW-A3R5-06 8 17726125 17726125 C T FGL1 Nonsense_Mutation p.W237* 0.31 TCGA-FW-A3R5-06 8 17941632 17941632 G A ASAH1 Intron 0.27 TCGA-FW-A3R5-06 8 1808290 1808290 C T ARHGEF10 Missense_Mutation p.L141F 0.34 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-FW-A3R5-06 8 18257552 18257552 G A NAT2 Silent p.K13K 0.24 TCGA-FW-A3R5-06 8 18257561 18257561 G A NAT2 Silent p.R16R 0.31 TCGA-FW-A3R5-06 8 18258340 18258340 G A NAT2 Missense_Mutation p.G276E 0.27 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 8 18258341 18258341 G A NAT2 Silent p.G276G 0.20 TCGA-FW-A3R5-06 8 18393374 18393374 G A PSD3 Missense_Mutation p.S1008L 0.30 deleterious(0) probably_damaging(0.97) TCGA-FW-A3R5-06 8 18413795 18413795 G A PSD3 Missense_Mutation p.S951L 0.23 tolerated(0.08) probably_damaging(0.995) TCGA-FW-A3R5-06 8 18725187 18725187 C T PSD3 Missense_Mutation p.G544E 0.27 tolerated(0.31) benign(0.014) TCGA-FW-A3R5-06 8 18725192 18725192 G A PSD3 Silent p.F542F 0.08 TCGA-FW-A3R5-06 8 18725439 18725439 G A PSD3 Missense_Mutation p.S460F 0.30 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 18729423 18729423 C T PSD3 Silent p.Q317Q 0.27 TCGA-FW-A3R5-06 8 18729931 18729931 C T PSD3 Missense_Mutation p.G148E 0.11 tolerated_low_confidence(0.24) benign(0.016) TCGA-FW-A3R5-06 8 18729932 18729932 C T PSD3 Missense_Mutation p.G148R 0.11 tolerated_low_confidence(0.12) benign(0.04) TCGA-FW-A3R5-06 8 192971 192971 C T ZNF596 Nonsense_Mutation p.Q33* 0.39 TCGA-FW-A3R5-06 8 19362866 19362866 C T CSGALNACT1 Silent p.E160E 0.45 TCGA-FW-A3R5-06 8 1950698 1950698 C T KBTBD11 Missense_Mutation p.A447V 0.25 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 8 1950790 1950790 G A KBTBD11 Missense_Mutation p.D478N 0.21 tolerated(0.15) probably_damaging(1) TCGA-FW-A3R5-06 8 19703292 19703292 C T INTS10 Nonsense_Mutation p.Q654* 0.22 TCGA-FW-A3R5-06 8 20035989 20035989 G A SLC18A1 Silent p.I168I 0.22 TCGA-FW-A3R5-06 8 20077862 20077862 C T ATP6V1B2 Silent p.I495I 0.20 TCGA-FW-A3R5-06 8 2020459 2020459 C T MYOM2 Silent p.F276F 0.11 TCGA-FW-A3R5-06 8 2020477 2020477 G A MYOM2 Silent p.E282E 0.26 TCGA-FW-A3R5-06 8 2026852 2026852 G A MYOM2 Missense_Mutation p.D434N 0.19 deleterious(0) probably_damaging(0.964) TCGA-FW-A3R5-06 8 2026901 2026901 G A MYOM2 Missense_Mutation p.G450E 0.33 deleterious(0.01) benign(0.35) TCGA-FW-A3R5-06 8 2040308 2040308 C T MYOM2 Missense_Mutation p.L655F 0.12 tolerated(0.05) benign(0.094) TCGA-FW-A3R5-06 8 2057320 2057320 G A MYOM2 Missense_Mutation p.E1060K 0.27 tolerated(0.16) benign(0.296) TCGA-FW-A3R5-06 8 2071147 2071147 C T MYOM2 Missense_Mutation p.T1159I 0.11 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 8 21563492 21563492 G A GFRA2 Missense_Mutation p.P286S 0.36 deleterious(0.02) possibly_damaging(0.794) TCGA-FW-A3R5-06 8 21766767 21766767 G A DOK2 3'UTR 0.20 TCGA-FW-A3R5-06 8 21766932 21766932 C T DOK2 Missense_Mutation p.D377N 0.29 deleterious(0.04) benign(0.169) TCGA-FW-A3R5-06 8 21769936 21769936 G A DOK2 Missense_Mutation p.P50L 0.29 tolerated(0.3) benign(0.002) TCGA-FW-A3R5-06 8 21891760 21891760 C T NPM2 Missense_Mutation p.P169S 0.33 tolerated(0.35) benign(0.063) TCGA-FW-A3R5-06 8 21996484 21996484 G A REEP4 Missense_Mutation p.P170S 0.27 tolerated(0.08) benign(0.021) TCGA-FW-A3R5-06 8 22005672 22005672 C T LGI3 3'UTR 0.09 TCGA-FW-A3R5-06 8 22006032 22006032 G A LGI3 Missense_Mutation p.R430C 0.33 deleterious(0) possibly_damaging(0.744) TCGA-FW-A3R5-06 8 22006104 22006104 G A LGI3 Missense_Mutation p.R406C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 22006318 22006318 G A LGI3 Silent p.A334A 0.28 TCGA-FW-A3R5-06 8 22051671 22051671 C T BMP1 Silent p.F427F 0.38 TCGA-FW-A3R5-06 8 22058877 22058877 C T BMP1 Intron 0.29 TCGA-FW-A3R5-06 8 22058878 22058878 C T BMP1 Intron 0.30 TCGA-FW-A3R5-06 8 22058897 22058897 C T BMP1 Intron 0.26 TCGA-FW-A3R5-06 8 22059407 22059407 C T BMP1 Silent p.F733F 0.15 TCGA-FW-A3R5-06 8 22078966 22078966 G A PHYHIP Missense_Mutation p.T298I 0.22 tolerated(0.33) benign(0.061) TCGA-FW-A3R5-06 8 22079094 22079094 G A PHYHIP Silent p.P255P 0.25 TCGA-FW-A3R5-06 8 22079283 22079283 C T PHYHIP Silent p.T192T 0.27 TCGA-FW-A3R5-06 8 22102552 22102552 G A POLR3D 5'Flank 0.22 TCGA-FW-A3R5-06 8 22106037 22106037 C T POLR3D Missense_Mutation p.P177L 0.30 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 8 22107731 22107731 C T POLR3D Silent p.S355S 0.27 TCGA-FW-A3R5-06 8 22438040 22438040 C T PDLIM2 Intron 0.19 TCGA-FW-A3R5-06 8 22442865 22442865 C T PDLIM2 Missense_Mutation p.P415S 0.34 tolerated(0.12) benign(0.08) TCGA-FW-A3R5-06 8 22926370 22926370 C T TNFRSF10B Missense_Mutation p.G13E 0.38 deleterious(0.02) benign(0.074) TCGA-FW-A3R5-06 8 22972217 22972217 G A TNFRSF10C Missense_Mutation p.G72S 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 22974279 22974279 C T TNFRSF10C Missense_Mutation p.P172L 0.09 tolerated(0.3) benign(0.004) TCGA-FW-A3R5-06 8 22974572 22974572 C T TNFRSF10C 3'UTR 0.10 TCGA-FW-A3R5-06 8 22974641 22974641 C T TNFRSF10C 3'UTR 0.43 TCGA-FW-A3R5-06 8 22974720 22974720 C T TNFRSF10C 3'UTR 0.60 TCGA-FW-A3R5-06 8 23116264 23116264 C T CHMP7 Missense_Mutation p.A327V 0.19 deleterious(0.01) possibly_damaging(0.609) TCGA-FW-A3R5-06 8 23177458 23177458 G A LOXL2 Silent p.I470I 0.32 TCGA-FW-A3R5-06 8 23225854 23225854 G A LOXL2 Missense_Mutation p.P4L 0.40 tolerated_low_confidence(1) possibly_damaging(0.908) TCGA-FW-A3R5-06 8 23292929 23292929 G A ENTPD4 Missense_Mutation p.S479F 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 8 23305332 23305332 G A ENTPD4 Silent p.I91I 0.21 TCGA-FW-A3R5-06 8 23429132 23429132 C T SLC25A37 Missense_Mutation p.L261F 0.28 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 8 23702404 23702404 C T STC1 Missense_Mutation p.R208Q 0.18 tolerated(0.27) benign(0.018) TCGA-FW-A3R5-06 8 24151647 24151647 C T ADAM28 5'UTR 0.33 TCGA-FW-A3R5-06 8 24167407 24167407 G A ADAM28 Missense_Mutation p.E51K 0.13 tolerated(0.43) benign(0.134) TCGA-FW-A3R5-06 8 24170931 24170931 C T ADAM28 Silent p.Y138Y 0.18 TCGA-FW-A3R5-06 8 24170985 24170985 C T ADAM28 Silent p.F156F 0.19 TCGA-FW-A3R5-06 8 24171030 24171030 G A ADAM28 Missense_Mutation p.M171I 0.21 tolerated(0.05) benign(0.003) TCGA-FW-A3R5-06 8 24178869 24178869 G A ADAM28 Intron 0.24 TCGA-FW-A3R5-06 8 24181469 24181469 G A ADAM28 Silent p.G281G 0.30 TCGA-FW-A3R5-06 8 24187498 24187498 G A ADAM28 Missense_Mutation p.D325N 0.19 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 8 24197023 24197023 G A ADAM28 Missense_Mutation p.G538R 0.11 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 8 24209511 24209511 G A ADAM28 Missense_Mutation p.M730I 0.27 tolerated(0.15) benign(0.003) TCGA-FW-A3R5-06 8 24242028 24242028 G A ADAMDEC1 Missense_Mutation p.G4E 0.39 tolerated(0.35) benign(0.001) TCGA-FW-A3R5-06 8 24250784 24250784 G A ADAMDEC1 Missense_Mutation p.E73K 0.28 tolerated(0.09) benign(0.059) TCGA-FW-A3R5-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.33 TCGA-FW-A3R5-06 8 24255255 24255255 C T ADAMDEC1 Silent p.A229A 0.10 TCGA-FW-A3R5-06 8 24256502 24256502 G A ADAMDEC1 Nonsense_Mutation p.W293* 0.26 TCGA-FW-A3R5-06 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.31 TCGA-FW-A3R5-06 8 24298601 24298601 C T ADAM7 5'UTR 0.28 TCGA-FW-A3R5-06 8 24344800 24344800 C T ADAM7 Missense_Mutation p.S354L 0.35 tolerated(0.7) benign(0.002) TCGA-FW-A3R5-06 8 24773215 24773215 C T NEFM Missense_Mutation p.A393V 0.37 deleterious(0) unknown(0) TCGA-FW-A3R5-06 8 24775148 24775148 G A NEFM Missense_Mutation p.E594K 0.27 tolerated(0.11) unknown(0) TCGA-FW-A3R5-06 8 24775279 24775279 G A NEFM Silent p.E637E 0.23 TCGA-FW-A3R5-06 8 24776027 24776027 G A NEFM Missense_Mutation p.E887K 0.31 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FW-A3R5-06 8 24810379 24810379 C T CTD-2168K21.2 5'Flank 0.24 TCGA-FW-A3R5-06 8 24811049 24811049 C T CTD-2168K21.2 5'Flank 0.26 TCGA-FW-A3R5-06 8 24811299 24811299 C T CTD-2168K21.2 5'Flank 0.29 TCGA-FW-A3R5-06 8 24811764 24811764 C T CTD-2168K21.2 5'Flank 0.19 TCGA-FW-A3R5-06 8 25298174 25298174 G A KCTD9 Missense_Mutation p.S77F 0.34 tolerated(0.06) benign(0.001) TCGA-FW-A3R5-06 8 25365205 25365205 C T CDCA2 Missense_Mutation p.S1008F 0.26 tolerated(0.09) benign(0.017) TCGA-FW-A3R5-06 8 25708275 25708275 T A EBF2 Missense_Mutation p.M511L 0.32 tolerated_low_confidence(0.31) benign(0.267) TCGA-FW-A3R5-06 8 25718682 25718682 G A EBF2 Missense_Mutation p.P409S 0.29 tolerated(0.77) benign(0.01) TCGA-FW-A3R5-06 8 25718726 25718726 C T EBF2 Missense_Mutation p.R394Q 0.33 deleterious(0.01) possibly_damaging(0.76) TCGA-FW-A3R5-06 8 25766052 25766052 G A EBF2 Missense_Mutation p.L191F 0.09 deleterious(0.02) probably_damaging(0.98) TCGA-FW-A3R5-06 8 26365908 26365908 G A PNMA2 Nonsense_Mutation p.R122* 0.27 TCGA-FW-A3R5-06 8 26435788 26435788 G A DPYSL2 Silent p.K6K 0.19 TCGA-FW-A3R5-06 8 26627498 26627498 C T ADRA1A Intron 0.19 TCGA-FW-A3R5-06 8 26627647 26627647 C T ADRA1A Intron 0.31 TCGA-FW-A3R5-06 8 26722534 26722534 C T ADRA1A 5'UTR 0.25 TCGA-FW-A3R5-06 8 27097571 27097571 C T STMN4 Missense_Mutation p.E170K 0.27 deleterious(0.02) possibly_damaging(0.504) TCGA-FW-A3R5-06 8 27151776 27151776 G A TRIM35 Missense_Mutation p.R195C 0.19 deleterious(0) possibly_damaging(0.708) TCGA-FW-A3R5-06 8 27168522 27168522 G A TRIM35 Silent p.N77N 0.33 TCGA-FW-A3R5-06 8 27289779 27289779 C T PTK2B Silent p.P296P 0.24 TCGA-FW-A3R5-06 8 27295313 27295313 C T PTK2B Missense_Mutation p.S520F 0.24 deleterious(0.02) benign(0.309) TCGA-FW-A3R5-06 8 27296616 27296616 C T PTK2B Missense_Mutation p.S571F 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 27309058 27309058 C T PTK2B Intron 0.16 TCGA-FW-A3R5-06 8 27321123 27321123 G A CHRNA2 Silent p.I279I 0.26 TCGA-FW-A3R5-06 8 27321384 27321384 G A CHRNA2 Silent p.F192F 0.34 TCGA-FW-A3R5-06 8 27348760 27348760 G A EPHX2 Missense_Mutation p.G12E 0.44 deleterious(0) possibly_damaging(0.795) TCGA-FW-A3R5-06 8 27463978 27463978 C T CLU Missense_Mutation p.E104K 0.25 deleterious(0.02) benign(0.077) TCGA-FW-A3R5-06 8 27516538 27516538 G A SCARA3 Missense_Mutation p.G284E 0.27 deleterious(0.03) probably_damaging(0.953) TCGA-FW-A3R5-06 8 27516588 27516588 G A SCARA3 Missense_Mutation p.V301I 0.31 tolerated(0.11) benign(0.214) TCGA-FW-A3R5-06 8 27528443 27528443 G A SCARA3 Missense_Mutation p.G466R 0.20 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 8 27528597 27528597 G A SCARA3 Missense_Mutation p.G517E 0.20 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 8 27660931 27660931 C T ESCO2 Silent p.F594F 0.29 TCGA-FW-A3R5-06 8 27925193 27925193 C T NUGGC Silent p.E183E 0.20 TCGA-FW-A3R5-06 8 2800046 2800046 G A CSMD1 Missense_Mutation p.P3495S 0.26 possibly_damaging(0.899) TCGA-FW-A3R5-06 8 2808778 2808778 G A CSMD1 Silent p.F3353F 0.26 TCGA-FW-A3R5-06 8 2813223 2813223 G A CSMD1 Silent p.F3294F 0.21 TCGA-FW-A3R5-06 8 2818707 2818707 C T CSMD1 Missense_Mutation p.G3220S 0.24 probably_damaging(1) TCGA-FW-A3R5-06 8 2820047 2820047 G A CSMD1 Missense_Mutation p.S3190F 0.24 probably_damaging(0.999) TCGA-FW-A3R5-06 8 2820136 2820136 G A CSMD1 Silent p.I3160I 0.52 TCGA-FW-A3R5-06 8 28209208 28209208 G A ZNF395 Missense_Mutation p.P346L 0.10 deleterious(0.01) benign(0.006) TCGA-FW-A3R5-06 8 28218675 28218675 G A ZNF395 5'UTR 0.24 TCGA-FW-A3R5-06 8 2824232 2824232 C T CSMD1 Missense_Mutation p.G2987E 0.19 probably_damaging(0.997) TCGA-FW-A3R5-06 8 2855543 2855543 G A CSMD1 Silent p.P2789P 0.23 TCGA-FW-A3R5-06 8 2855544 2855544 G A CSMD1 Missense_Mutation p.P2789L 0.23 probably_damaging(1) TCGA-FW-A3R5-06 8 2855607 2855607 T A CSMD1 Missense_Mutation p.Y2768F 0.17 benign(0.12) TCGA-FW-A3R5-06 8 28574438 28574438 C T EXTL3 Missense_Mutation p.L288F 0.18 tolerated(0.44) benign(0.072) TCGA-FW-A3R5-06 8 28575418 28575418 C T EXTL3 Silent p.F614F 0.15 TCGA-FW-A3R5-06 8 28695168 28695168 G A INTS9 Silent p.T129T 0.14 TCGA-FW-A3R5-06 8 2886878 2886878 C T CSMD1 Silent p.G2606G 0.17 TCGA-FW-A3R5-06 8 28928094 28928094 G A KIF13B Missense_Mutation p.S1803L 0.32 deleterious_low_confidence(0.04) probably_damaging(0.947) TCGA-FW-A3R5-06 8 2910072 2910072 G A CSMD1 Silent p.G2524G 0.17 TCGA-FW-A3R5-06 8 29194715 29194715 G A DUSP4 Missense_Mutation p.S338F 0.26 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 8 29194912 29194912 G A DUSP4 Silent p.C272C 0.21 TCGA-FW-A3R5-06 8 2944669 2944669 C T CSMD1 Missense_Mutation p.R2475Q 0.22 benign(0.013) TCGA-FW-A3R5-06 8 2967781 2967781 C T CSMD1 Silent p.L2169L 0.12 TCGA-FW-A3R5-06 8 3000022 3000022 G A CSMD1 Missense_Mutation p.S2069L 0.20 probably_damaging(0.994) TCGA-FW-A3R5-06 8 3000169 3000169 G A CSMD1 Missense_Mutation p.S2020F 0.21 probably_damaging(0.997) TCGA-FW-A3R5-06 8 30210015 30210015 G A TUBBP1 RNA 0.30 TCGA-FW-A3R5-06 8 30210064 30210064 G A TUBBP1 RNA 0.34 TCGA-FW-A3R5-06 8 3046493 3046493 G A CSMD1 Silent p.I1813I 0.21 TCGA-FW-A3R5-06 8 3047596 3047596 C T CSMD1 Missense_Mutation p.E1746K 0.36 probably_damaging(0.97) TCGA-FW-A3R5-06 8 30560722 30560722 G A GSR Silent p.F176F 0.31 TCGA-FW-A3R5-06 8 30567359 30567359 G A GSR Missense_Mutation p.P132S 0.22 tolerated(0.31) benign(0) TCGA-FW-A3R5-06 8 30701523 30701523 C T TEX15 Missense_Mutation p.D1671N 0.21 deleterious(0) benign(0.08) TCGA-FW-A3R5-06 8 30702494 30702494 C T TEX15 Missense_Mutation p.G1347E 0.10 tolerated(1) benign(0.022) TCGA-FW-A3R5-06 8 30702720 30702720 C T TEX15 Missense_Mutation p.D1272N 0.19 tolerated(0.08) benign(0.011) TCGA-FW-A3R5-06 8 30702748 30702748 C T TEX15 Silent p.A1262A 0.16 TCGA-FW-A3R5-06 8 30703584 30703584 C T TEX15 Missense_Mutation p.E984K 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-FW-A3R5-06 8 30704350 30704350 C T TEX15 Silent p.G728G 0.11 TCGA-FW-A3R5-06 8 30705246 30705246 C T TEX15 Missense_Mutation p.E430K 0.20 tolerated(0.33) benign(0.018) TCGA-FW-A3R5-06 8 30705252 30705252 C T TEX15 Missense_Mutation p.E428K 0.20 tolerated(0.08) benign(0.066) TCGA-FW-A3R5-06 8 30705332 30705332 G A TEX15 Missense_Mutation p.S401L 0.15 tolerated(0.16) benign(0.364) TCGA-FW-A3R5-06 8 3081303 3081303 C T CSMD1 Missense_Mutation p.D1478N 0.29 probably_damaging(0.984) TCGA-FW-A3R5-06 8 3087637 3087637 G A CSMD1 Nonsense_Mutation p.Q1424* 0.30 TCGA-FW-A3R5-06 8 30889533 30889533 C T PURG Missense_Mutation p.D256N 0.29 deleterious(0.05) benign(0.027) TCGA-FW-A3R5-06 8 30889719 30889719 G A PURG Missense_Mutation p.R194C 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 30889982 30889982 G A PURG Missense_Mutation p.T106I 0.27 tolerated(0.46) probably_damaging(0.988) TCGA-FW-A3R5-06 8 30948420 30948420 C T WRN Silent p.P597P 0.15 TCGA-FW-A3R5-06 8 31498133 31498133 C T NRG1 Silent p.P64P 0.16 TCGA-FW-A3R5-06 8 3200901 3200901 G A CSMD1 Silent p.I1182I 0.23 TCGA-FW-A3R5-06 8 32505269 32505269 C T NRG1 Intron 0.12 TCGA-FW-A3R5-06 8 3256994 3256994 G A CSMD1 Missense_Mutation p.P775L 0.25 probably_damaging(1) TCGA-FW-A3R5-06 8 32585567 32585567 C T NRG1 Silent p.D201D 0.21 TCGA-FW-A3R5-06 8 32618077 32618077 C T NRG1 Intron 0.38 TCGA-FW-A3R5-06 8 3265542 3265542 G A CSMD1 Silent p.V650V 0.12 TCGA-FW-A3R5-06 8 3267076 3267076 C T CSMD1 Missense_Mutation p.R538Q 0.15 benign(0.411) TCGA-FW-A3R5-06 8 3267122 3267122 C T CSMD1 Missense_Mutation p.E523K 0.28 benign(0.197) TCGA-FW-A3R5-06 8 33370169 33370169 G A TTI2 5'UTR 0.16 TCGA-FW-A3R5-06 8 33416195 33416195 G A RNF122 Silent p.V40V 0.21 TCGA-FW-A3R5-06 8 33449441 33449441 C T DUSP26 3'UTR 0.29 TCGA-FW-A3R5-06 8 33449517 33449517 C T DUSP26 3'UTR 0.26 TCGA-FW-A3R5-06 8 33449694 33449694 C T DUSP26 Missense_Mutation p.R158Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 33454981 33454981 G A DUSP26 Missense_Mutation p.S18F 0.22 tolerated(0.07) probably_damaging(0.962) TCGA-FW-A3R5-06 8 33454988 33454988 G A DUSP26 Missense_Mutation p.R16C 0.17 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 8 3351177 3351177 C T CSMD1 Silent p.G472G 0.62 TCGA-FW-A3R5-06 8 35406833 35406833 C T UNC5D Missense_Mutation p.P43S 0.08 deleterious(0.04) benign(0.184) TCGA-FW-A3R5-06 8 35406890 35406890 G A UNC5D Missense_Mutation p.D62N 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 8 35541110 35541110 G A UNC5D Missense_Mutation p.E206K 0.15 tolerated(0.84) benign(0.108) TCGA-FW-A3R5-06 8 35616947 35616947 C T UNC5D Missense_Mutation p.P758L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 8 35624433 35624433 C A UNC5D Missense_Mutation p.S776Y 0.16 tolerated(1) possibly_damaging(0.804) TCGA-FW-A3R5-06 8 35648033 35648033 C T UNC5D Silent p.S938S 0.29 TCGA-FW-A3R5-06 8 37689061 37689061 C T GPR124 Silent p.S351S 0.23 TCGA-FW-A3R5-06 8 37732434 37732434 G A RAB11FIP1 Silent p.D407D 0.25 TCGA-FW-A3R5-06 8 38110573 38110573 C T DDHD2 Missense_Mutation p.P607S 0.09 tolerated(1) probably_damaging(0.938) TCGA-FW-A3R5-06 8 38175368 38175368 G A WHSC1L1 Intron 0.43 TCGA-FW-A3R5-06 8 38187400 38187400 G A WHSC1L1 Silent p.P359P 0.21 TCGA-FW-A3R5-06 8 38258410 38258410 C T LETM2 Missense_Mutation p.R228C 0.37 deleterious(0) benign(0.102) TCGA-FW-A3R5-06 8 38370017 38370017 C T C8orf86 Missense_Mutation p.G187E 0.27 tolerated_low_confidence(0.32) benign(0.026) TCGA-FW-A3R5-06 8 3855571 3855571 G A CSMD1 Silent p.F224F 0.38 TCGA-FW-A3R5-06 8 3889576 3889576 C T CSMD1 Missense_Mutation p.G154E 0.23 probably_damaging(1) TCGA-FW-A3R5-06 8 3889577 3889577 C T CSMD1 Missense_Mutation p.G154R 0.23 probably_damaging(1) TCGA-FW-A3R5-06 8 3889591 3889591 C T CSMD1 Missense_Mutation p.G149E 0.21 probably_damaging(1) TCGA-FW-A3R5-06 8 39022673 39022673 C T ADAM32 Missense_Mutation p.S264F 0.32 tolerated(0.12) benign(0.395) TCGA-FW-A3R5-06 8 39068745 39068745 C T ADAM32 Missense_Mutation p.L379F 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 39089647 39089647 G A ADAM32 Missense_Mutation p.G543R 0.16 tolerated(0.28) possibly_damaging(0.759) TCGA-FW-A3R5-06 8 39112006 39112006 G A ADAM32 Missense_Mutation p.G659E 0.44 tolerated(0.36) benign(0.005) TCGA-FW-A3R5-06 8 39114774 39114774 C T ADAM32 Missense_Mutation p.P692S 0.25 tolerated(0.1) benign(0.245) TCGA-FW-A3R5-06 8 39114782 39114782 C T ADAM32 Silent p.L694L 0.24 TCGA-FW-A3R5-06 8 39442854 39442854 G A ADAM18 Missense_Mutation p.E39K 0.32 tolerated(0.36) benign(0.029) TCGA-FW-A3R5-06 8 39495058 39495058 G A ADAM18 Missense_Mutation p.M221I 0.22 tolerated(0.09) benign(0.083) TCGA-FW-A3R5-06 8 39495059 39495059 T C ADAM18 Missense_Mutation p.F222L 0.22 deleterious(0.02) benign(0.211) TCGA-FW-A3R5-06 8 39496022 39496022 C T ADAM18 Missense_Mutation p.P289L 0.18 tolerated(0.2) probably_damaging(0.987) TCGA-FW-A3R5-06 8 39525587 39525587 G A ADAM18 Missense_Mutation p.G466E 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 39535000 39535000 G A ADAM18 Missense_Mutation p.E526K 0.21 deleterious(0) benign(0.338) TCGA-FW-A3R5-06 8 39564382 39564382 C T ADAM18 Missense_Mutation p.S659F 0.12 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 8 39581281 39581281 G A ADAM18 Missense_Mutation p.E678K 0.32 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 8 39606906 39606906 G A ADAM2 Nonsense_Mutation p.Q647* 0.23 TCGA-FW-A3R5-06 8 39613254 39613254 G A ADAM2 Missense_Mutation p.S597L 0.30 tolerated(0.34) benign(0.003) TCGA-FW-A3R5-06 8 39645728 39645728 C T ADAM2 Missense_Mutation p.E229K 0.16 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 8 39645736 39645736 G A ADAM2 Missense_Mutation p.S226F 0.33 deleterious(0.02) possibly_damaging(0.539) TCGA-FW-A3R5-06 8 39666958 39666958 C T ADAM2 Missense_Mutation p.E181K 0.16 deleterious(0.01) possibly_damaging(0.557) TCGA-FW-A3R5-06 8 39678528 39678528 C T ADAM2 Missense_Mutation p.S169N 0.30 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 8 39785360 39785360 C T IDO1 Nonsense_Mutation p.Q290* 0.27 TCGA-FW-A3R5-06 8 39792675 39792675 G A IDO2 5'UTR 0.30 TCGA-FW-A3R5-06 8 39821156 39821156 G A IDO2 Nonsense_Mutation p.W56* 0.23 TCGA-FW-A3R5-06 8 39871124 39871124 G A IDO2 Missense_Mutation p.E267K 0.19 deleterious(0.03) possibly_damaging(0.519) TCGA-FW-A3R5-06 8 39871208 39871208 G A IDO2 Missense_Mutation p.G295S 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 8 39872801 39872801 C T IDO2 Missense_Mutation p.P315S 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-FW-A3R5-06 8 39873135 39873135 C T IDO2 3'UTR 0.28 TCGA-FW-A3R5-06 8 39873212 39873212 G A IDO2 3'UTR 0.33 TCGA-FW-A3R5-06 8 40011025 40011025 G A C8orf4 5'UTR 0.10 TCGA-FW-A3R5-06 8 40532323 40532323 C T ZMAT4 Missense_Mutation p.M159I 0.18 tolerated(0.06) probably_damaging(0.989) TCGA-FW-A3R5-06 8 40554830 40554830 G A ZMAT4 Nonsense_Mutation p.Q95* 0.25 TCGA-FW-A3R5-06 8 41355058 41355058 C T GOLGA7 Nonsense_Mutation p.R48* 0.35 TCGA-FW-A3R5-06 8 41519017 41519017 C T ANK1 Intron 0.25 TCGA-FW-A3R5-06 8 41525800 41525800 G A ANK1 Silent p.F1834F 0.38 TCGA-FW-A3R5-06 8 41525904 41525904 C T ANK1 Missense_Mutation p.E1800K 0.29 tolerated_low_confidence(0.19) benign(0.135) TCGA-FW-A3R5-06 8 41542137 41542137 G A ANK1 Nonsense_Mutation p.R1529* 0.25 TCGA-FW-A3R5-06 8 41545673 41545673 C T ANK1 Splice_Site p.X1461_splice 0.23 TCGA-FW-A3R5-06 8 41550202 41550202 C T ANK1 Silent p.E1315E 0.26 TCGA-FW-A3R5-06 8 41554252 41554252 T G ANK1 Missense_Mutation p.S934R 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-FW-A3R5-06 8 41559131 41559131 C T ANK1 Missense_Mutation p.D833N 0.26 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3R5-06 8 41581076 41581076 C T ANK1 Missense_Mutation p.A296T 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 41582036 41582036 C T ANK1 Missense_Mutation p.E250K 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 8 41582040 41582040 G A ANK1 Silent p.H248H 0.38 TCGA-FW-A3R5-06 8 41583305 41583305 C T ANK1 Missense_Mutation p.D229N 0.32 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 41585482 41585482 C T ANK1 Missense_Mutation p.D124N 0.17 tolerated(0.22) benign(0.007) TCGA-FW-A3R5-06 8 41792152 41792152 G A KAT6A Missense_Mutation p.P1196S 0.15 benign(0.012) TCGA-FW-A3R5-06 8 41839448 41839448 G A KAT6A Missense_Mutation p.S245F 0.29 probably_damaging(0.998) TCGA-FW-A3R5-06 8 42050647 42050647 G A PLAT Silent p.F19F 0.28 TCGA-FW-A3R5-06 8 42233236 42233236 C T DKK4 Missense_Mutation p.R75Q 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-FW-A3R5-06 8 42302216 42302216 G A SLC20A2 Silent p.F226F 0.35 TCGA-FW-A3R5-06 8 42552660 42552660 A T CHRNB3 5'UTR 0.21 TCGA-FW-A3R5-06 8 42611578 42611578 G A CHRNA6 Missense_Mutation p.S255L 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 43013755 43013755 C T HGSNAT Missense_Mutation p.P91L 0.27 tolerated(0.31) benign(0.002) TCGA-FW-A3R5-06 8 43054643 43054643 C T HGSNAT Silent p.I613I 0.26 TCGA-FW-A3R5-06 8 43171060 43171060 G A POTEA RNA 0.25 TCGA-FW-A3R5-06 8 43197462 43197462 G A POTEA RNA 0.26 TCGA-FW-A3R5-06 8 48309146 48309146 C T SPIDR Missense_Mutation p.P246S 0.30 tolerated(0.48) benign(0.082) TCGA-FW-A3R5-06 8 48353039 48353039 C T SPIDR Silent p.F344F 0.28 TCGA-FW-A3R5-06 8 48614394 48614394 C T SPIDR Missense_Mutation p.P629S 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-FW-A3R5-06 8 48625280 48625280 C T SPIDR Silent p.V678V 0.10 TCGA-FW-A3R5-06 8 48752648 48752648 G A PRKDC Silent p.F2460F 0.27 TCGA-FW-A3R5-06 8 48772186 48772186 G A PRKDC Missense_Mutation p.R2064C 0.25 possibly_damaging(0.764) TCGA-FW-A3R5-06 8 48849077 48849077 G A PRKDC Missense_Mutation p.P372S 0.30 probably_damaging(1) TCGA-FW-A3R5-06 8 48866231 48866231 G A PRKDC Silent p.L224L 0.21 TCGA-FW-A3R5-06 8 49643999 49643999 C T EFCAB1 Missense_Mutation p.R41K 0.20 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 8 49647833 49647833 C T EFCAB1 5'Flank 0.19 TCGA-FW-A3R5-06 8 51362271 51362271 C T SNTG1 Missense_Mutation p.S88F 0.26 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 8 51449363 51449363 G A SNTG1 Silent p.L225L 0.10 TCGA-FW-A3R5-06 8 52232540 52232540 G A PXDNL Missense_Mutation p.P1435S 0.32 tolerated(0.79) benign(0.01) TCGA-FW-A3R5-06 8 52258422 52258422 C T PXDNL Silent p.K1329K 0.20 TCGA-FW-A3R5-06 8 52284496 52284496 C T PXDNL Missense_Mutation p.D1280N 0.24 tolerated(0.09) benign(0.086) TCGA-FW-A3R5-06 8 52321402 52321402 G A PXDNL Missense_Mutation p.P928S 0.35 tolerated(0.77) benign(0.006) TCGA-FW-A3R5-06 8 52321663 52321663 G A PXDNL Missense_Mutation p.P841S 0.24 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 8 52321967 52321967 C T PXDNL Silent p.Q739Q 0.15 TCGA-FW-A3R5-06 8 52322009 52322009 C T PXDNL Silent p.A725A 0.14 TCGA-FW-A3R5-06 8 52323898 52323898 C T PXDNL Missense_Mutation p.M658I 0.40 tolerated(0.42) benign(0) TCGA-FW-A3R5-06 8 53062516 53062516 C T ST18 Missense_Mutation p.E610K 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 53084376 53084376 C T ST18 Missense_Mutation p.G349R 0.26 tolerated(0.66) probably_damaging(0.966) TCGA-FW-A3R5-06 8 53084728 53084728 C T ST18 Silent p.L231L 0.19 TCGA-FW-A3R5-06 8 53084910 53084910 G A ST18 Missense_Mutation p.H171Y 0.34 deleterious(0.02) benign(0.089) TCGA-FW-A3R5-06 8 53558288 53558288 G A RB1CC1 Nonsense_Mutation p.R1321* 0.29 TCGA-FW-A3R5-06 8 53586454 53586454 G A RB1CC1 Missense_Mutation p.P318L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 8 53852583 53852583 C T NPBWR1 Missense_Mutation p.A39V 0.26 tolerated(0.55) benign(0.265) TCGA-FW-A3R5-06 8 54141851 54141851 G A OPRK1 3'UTR 0.22 TCGA-FW-A3R5-06 8 54142212 54142212 C T OPRK1 Missense_Mutation p.R263Q 0.33 tolerated(0.23) probably_damaging(0.999) TCGA-FW-A3R5-06 8 54142292 54142292 C T OPRK1 Silent p.V236V 0.25 TCGA-FW-A3R5-06 8 54147437 54147437 C T OPRK1 Silent p.V164V 0.17 TCGA-FW-A3R5-06 8 54147547 54147547 C T OPRK1 Missense_Mutation p.D128N 0.34 tolerated(0.46) benign(0.034) TCGA-FW-A3R5-06 8 55370910 55370910 C T SOX17 Missense_Mutation p.P71L 0.38 deleterious(0) possibly_damaging(0.848) TCGA-FW-A3R5-06 8 55534823 55534823 A T RP1 Silent p.G254G 0.24 TCGA-FW-A3R5-06 8 55537328 55537328 C T RP1 Missense_Mutation p.P296S 0.24 tolerated(0.22) benign(0.015) TCGA-FW-A3R5-06 8 55537447 55537447 G A RP1 Missense_Mutation p.M335I 0.35 deleterious(0) possibly_damaging(0.586) TCGA-FW-A3R5-06 8 55537744 55537744 C T RP1 Silent p.I434I 0.31 TCGA-FW-A3R5-06 8 55537901 55537901 G A RP1 Missense_Mutation p.E487K 0.27 deleterious(0.04) benign(0.263) TCGA-FW-A3R5-06 8 55538257 55538257 C T RP1 Silent p.F605F 0.22 TCGA-FW-A3R5-06 8 55538718 55538718 G A RP1 Missense_Mutation p.R759K 0.21 tolerated(0.53) benign(0.01) TCGA-FW-A3R5-06 8 55538757 55538757 G A RP1 Missense_Mutation p.G772E 0.11 tolerated(0.1) benign(0.423) TCGA-FW-A3R5-06 8 55538849 55538849 C T RP1 Missense_Mutation p.P803S 0.31 tolerated(0.82) benign(0.007) TCGA-FW-A3R5-06 8 55539234 55539234 C T RP1 Missense_Mutation p.P931L 0.25 tolerated(0.1) benign(0.018) TCGA-FW-A3R5-06 8 55539443 55539443 G A RP1 Missense_Mutation p.E1001K 0.24 tolerated(0.06) benign(0.146) TCGA-FW-A3R5-06 8 55539788 55539788 C T RP1 Missense_Mutation p.P1116S 0.23 tolerated(0.92) benign(0.004) TCGA-FW-A3R5-06 8 55540430 55540430 G A RP1 Missense_Mutation p.D1330N 0.20 tolerated(0.18) benign(0.023) TCGA-FW-A3R5-06 8 55540727 55540727 C T RP1 Nonsense_Mutation p.Q1429* 0.29 TCGA-FW-A3R5-06 8 55540842 55540842 C T RP1 Missense_Mutation p.S1467F 0.16 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 8 55541169 55541169 C T RP1 Missense_Mutation p.S1576F 0.20 deleterious(0) possibly_damaging(0.854) TCGA-FW-A3R5-06 8 55541199 55541199 C T RP1 Missense_Mutation p.P1586L 0.45 deleterious(0) probably_damaging(0.911) TCGA-FW-A3R5-06 8 55542092 55542092 G A RP1 Missense_Mutation p.D1884N 0.27 tolerated(0.24) benign(0.006) TCGA-FW-A3R5-06 8 55542276 55542276 A G RP1 Missense_Mutation p.N1945S 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 55542280 55542280 C T RP1 Silent p.F1946F 0.18 TCGA-FW-A3R5-06 8 55542468 55542468 G A RP1 Missense_Mutation p.R2009K 0.34 tolerated(0.37) benign(0.033) TCGA-FW-A3R5-06 8 55542936 55542936 C T RP1 3'UTR 0.18 TCGA-FW-A3R5-06 8 56270365 56270365 C T XKR4 Silent p.L312L 0.26 TCGA-FW-A3R5-06 8 56435862 56435862 C T XKR4 Silent p.L343L 0.40 TCGA-FW-A3R5-06 8 56436483 56436483 C T XKR4 Silent p.S550S 0.14 TCGA-FW-A3R5-06 8 56436710 56436710 C T XKR4 Missense_Mutation p.S626F 0.29 deleterious(0) possibly_damaging(0.512) TCGA-FW-A3R5-06 8 56910937 56910937 G A LYN Silent p.K361K 0.25 TCGA-FW-A3R5-06 8 56922570 56922570 G A LYN Nonsense_Mutation p.W480* 0.11 TCGA-FW-A3R5-06 8 57025542 57025542 G A MOS Missense_Mutation p.L334F 0.19 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 8 57026446 57026446 C T MOS Silent p.A32A 0.38 TCGA-FW-A3R5-06 8 57026495 57026495 G A MOS Missense_Mutation p.S16F 0.28 deleterious(0.04) probably_damaging(0.937) TCGA-FW-A3R5-06 8 57078909 57078909 G A PLAG1 Missense_Mutation p.P466S 0.13 tolerated(0.38) benign(0.068) TCGA-FW-A3R5-06 8 57079149 57079149 G A PLAG1 Missense_Mutation p.P386S 0.25 tolerated(0.47) benign(0.004) TCGA-FW-A3R5-06 8 57079198 57079198 A G PLAG1 Silent p.S369S 0.27 TCGA-FW-A3R5-06 8 57079286 57079286 G A PLAG1 Missense_Mutation p.S340L 0.10 deleterious(0) possibly_damaging(0.879) TCGA-FW-A3R5-06 8 57213895 57213895 G A SDR16C5 3'UTR 0.38 TCGA-FW-A3R5-06 8 57221519 57221519 G A SDR16C5 Missense_Mutation p.S178L 0.33 tolerated(0.67) benign(0.143) TCGA-FW-A3R5-06 8 57228600 57228600 C T SDR16C5 Missense_Mutation p.E103K 0.24 deleterious(0.04) possibly_damaging(0.872) TCGA-FW-A3R5-06 8 57228679 57228679 C T SDR16C5 Silent p.G76G 0.13 TCGA-FW-A3R5-06 8 57353782 57353782 G A PENK 3'UTR 0.27 TCGA-FW-A3R5-06 8 57354001 57354001 C T PENK Missense_Mutation p.G212S 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 57354073 57354073 C T PENK Missense_Mutation p.G188S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 57354074 57354074 C T PENK Silent p.G187G 0.28 TCGA-FW-A3R5-06 8 57354218 57354218 G A PENK Silent p.F139F 0.15 TCGA-FW-A3R5-06 8 57358377 57358377 G A PENK Silent p.L46L 0.07 TCGA-FW-A3R5-06 8 57890620 57890620 G A IMPAD1 Missense_Mutation p.S212F 0.25 deleterious(0.01) possibly_damaging(0.61) TCGA-FW-A3R5-06 8 59059522 59059522 G A FAM110B Missense_Mutation p.E245K 0.23 tolerated(0.22) benign(0.034) TCGA-FW-A3R5-06 8 59345768 59345768 C T UBXN2B Missense_Mutation p.S130F 0.29 deleterious(0.03) benign(0.035) TCGA-FW-A3R5-06 8 59409322 59409322 C T CYP7A1 Missense_Mutation p.R250K 0.12 tolerated(0.93) probably_damaging(0.988) TCGA-FW-A3R5-06 8 59409675 59409675 G A CYP7A1 Silent p.T132T 0.28 TCGA-FW-A3R5-06 8 59410955 59410955 G A CYP7A1 Missense_Mutation p.P52S 0.27 tolerated(0.07) probably_damaging(1) TCGA-FW-A3R5-06 8 59728228 59728228 G A TOX Missense_Mutation p.S354L 0.22 deleterious(0.01) benign(0.053) TCGA-FW-A3R5-06 8 61742998 61742998 C T CHD7 Nonsense_Mutation p.Q1214* 0.25 TCGA-FW-A3R5-06 8 61761607 61761607 C T CHD7 Intron 0.09 TCGA-FW-A3R5-06 8 61769308 61769308 C T CHD7 Missense_Mutation p.S2490L 0.17 benign(0.41) TCGA-FW-A3R5-06 8 61777953 61777953 C T CHD7 Missense_Mutation p.P2819S 0.17 probably_damaging(0.986) TCGA-FW-A3R5-06 8 61778406 61778406 C T CHD7 Missense_Mutation p.L2970F 0.29 benign(0.069) TCGA-FW-A3R5-06 8 62212353 62212353 G A CLVS1 5'UTR 0.25 TCGA-FW-A3R5-06 8 62212745 62212745 G A CLVS1 Missense_Mutation p.R120K 0.32 tolerated(0.67) benign(0.098) TCGA-FW-A3R5-06 8 62212752 62212752 G A CLVS1 Silent p.L122L 0.23 TCGA-FW-A3R5-06 8 62212777 62212777 G A CLVS1 Missense_Mutation p.E131K 0.32 tolerated(0.72) benign(0.098) TCGA-FW-A3R5-06 8 62289169 62289169 C T CLVS1 Missense_Mutation p.S154F 0.14 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 8 62412107 62412107 G A CLVS1 3'UTR 0.11 TCGA-FW-A3R5-06 8 6360592 6360592 C T ANGPT2 3'UTR 0.23 TCGA-FW-A3R5-06 8 63659578 63659578 C T NKAIN3 Missense_Mutation p.P121S 0.38 tolerated(0.3) benign(0.014) TCGA-FW-A3R5-06 8 64099987 64099987 T C YTHDF3 Missense_Mutation p.F472S 0.28 deleterious(0) possibly_damaging(0.504) TCGA-FW-A3R5-06 8 65291793 65291793 G A MIR124-2 RNA 0.29 TCGA-FW-A3R5-06 8 65494180 65494180 G A BHLHE22 Missense_Mutation p.R278Q 0.31 deleterious(0) possibly_damaging(0.819) TCGA-FW-A3R5-06 8 65517349 65517349 C T CYP7B1 Missense_Mutation p.D375N 0.25 deleterious(0.03) possibly_damaging(0.658) TCGA-FW-A3R5-06 8 66517673 66517673 G A ARMC1 Missense_Mutation p.S189L 0.20 deleterious(0.04) possibly_damaging(0.608) TCGA-FW-A3R5-06 8 66620087 66620087 A G MTFR1 Silent p.Q258Q 0.21 TCGA-FW-A3R5-06 8 6679508 6679508 G A XKR5 RNA 0.50 TCGA-FW-A3R5-06 8 67039548 67039548 G A TRIM55 Silent p.Q15Q 0.20 TCGA-FW-A3R5-06 8 67064772 67064772 G A TRIM55 Silent p.V382V 0.18 TCGA-FW-A3R5-06 8 67066438 67066438 G T TRIM55 Missense_Mutation p.G465C 0.09 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-FW-A3R5-06 8 67066476 67066476 G A TRIM55 Silent p.S477S 0.39 TCGA-FW-A3R5-06 8 67086926 67086926 G A TRIM55 3'UTR 0.27 TCGA-FW-A3R5-06 8 67089149 67089149 C T CRH Silent p.R188R 0.33 TCGA-FW-A3R5-06 8 6728164 6728164 C T DEFB1 3'UTR 0.21 TCGA-FW-A3R5-06 8 6728337 6728337 G A DEFB1 Missense_Mutation p.L25F 0.25 deleterious(0) possibly_damaging(0.86) TCGA-FW-A3R5-06 8 67578798 67578798 G A VCPIP1 Silent p.P132P 0.29 TCGA-FW-A3R5-06 8 67763063 67763063 C T SGK3 Intron 0.18 TCGA-FW-A3R5-06 8 67803171 67803171 C T MCMDC2 Missense_Mutation p.T382I 0.24 deleterious(0.04) probably_damaging(0.987) TCGA-FW-A3R5-06 8 6782352 6782352 G A DEFA6 Silent p.F97F 0.07 TCGA-FW-A3R5-06 8 6783476 6783476 G A DEFA6 Missense_Mutation p.P28S 0.37 deleterious(0.05) probably_damaging(0.945) TCGA-FW-A3R5-06 8 6793498 6793498 G A DEFA4 3'UTR 0.10 TCGA-FW-A3R5-06 8 6793511 6793511 C T DEFA4 3'UTR 0.33 TCGA-FW-A3R5-06 8 6793654 6793654 C T DEFA4 Missense_Mutation p.R61K 0.15 tolerated(0.91) benign(0.008) TCGA-FW-A3R5-06 8 6794376 6794376 G T DEFA4 Missense_Mutation p.Q16K 0.12 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 8 68208743 68208743 G A ARFGEF1 Missense_Mutation p.L188F 0.08 tolerated(0.19) possibly_damaging(0.897) TCGA-FW-A3R5-06 8 68396090 68396090 G A CPA6 Nonsense_Mutation p.R251* 0.32 TCGA-FW-A3R5-06 8 68396094 68396094 C T CPA6 Splice_Site p.X250_splice 0.23 TCGA-FW-A3R5-06 8 6874236 6874236 G A DEFA3 Missense_Mutation p.S46F 0.06 tolerated(0.59) probably_damaging(0.99) TCGA-FW-A3R5-06 8 68939473 68939473 G A PREX2 Missense_Mutation p.G153E 0.27 deleterious(0) possibly_damaging(0.818) TCGA-FW-A3R5-06 8 68950480 68950480 G T PREX2 Silent p.V264V 0.31 TCGA-FW-A3R5-06 8 68950492 68950492 C T PREX2 Silent p.F268F 0.30 TCGA-FW-A3R5-06 8 68968189 68968189 C T PREX2 Silent p.F406F 0.25 TCGA-FW-A3R5-06 8 68968190 68968190 C T PREX2 Missense_Mutation p.P407S 0.35 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 68972915 68972915 G A PREX2 Missense_Mutation p.E414K 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3R5-06 8 68984806 68984806 G A PREX2 Splice_Site p.X523_splice 0.08 TCGA-FW-A3R5-06 8 68995622 68995622 G A PREX2 Missense_Mutation p.E676K 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 8 69000001 69000001 G A PREX2 Silent p.Q690Q 0.20 TCGA-FW-A3R5-06 8 69000035 69000035 G T PREX2 Missense_Mutation p.V702L 0.20 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 8 69027999 69027999 C T PREX2 Missense_Mutation p.S1053L 0.14 deleterious(0) benign(0.194) TCGA-FW-A3R5-06 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.34 deleterious(0.01) benign(0.024) TCGA-FW-A3R5-06 8 69050671 69050671 G A PREX2 Missense_Mutation p.E1336K 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-FW-A3R5-06 8 69358714 69358714 C T C8orf34 Intron 0.24 TCGA-FW-A3R5-06 8 69445293 69445293 C T C8orf34 Silent p.L338L 0.29 TCGA-FW-A3R5-06 8 69699681 69699681 G A C8orf34 Missense_Mutation p.E487K 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.716) TCGA-FW-A3R5-06 8 70488360 70488360 G A SULF1 Missense_Mutation p.E110K 0.18 deleterious(0.04) benign(0.269) TCGA-FW-A3R5-06 8 70501234 70501234 G A SULF1 Missense_Mutation p.E198K 0.19 deleterious(0) benign(0.212) TCGA-FW-A3R5-06 8 70501251 70501251 C T SULF1 Silent p.F203F 0.20 TCGA-FW-A3R5-06 8 70550872 70550872 C T SULF1 Missense_Mutation p.P807L 0.08 deleterious(0) possibly_damaging(0.624) TCGA-FW-A3R5-06 8 70744734 70744734 G A SLCO5A1 Missense_Mutation p.P59S 0.13 tolerated_low_confidence(0.22) benign(0.001) TCGA-FW-A3R5-06 8 70981484 70981484 G A PRDM14 Silent p.F204F 0.29 TCGA-FW-A3R5-06 8 70981621 70981621 G A PRDM14 Silent p.L159L 0.14 TCGA-FW-A3R5-06 8 71036137 71036137 G A NCOA2 Silent p.S1425S 0.38 TCGA-FW-A3R5-06 8 71036968 71036968 G A NCOA2 Missense_Mutation p.P1350L 0.12 deleterious(0.04) benign(0.004) TCGA-FW-A3R5-06 8 71041035 71041035 G A NCOA2 Missense_Mutation p.R1169C 0.33 tolerated(0.11) probably_damaging(1) TCGA-FW-A3R5-06 8 71068757 71068757 G A NCOA2 Missense_Mutation p.P615S 0.21 tolerated(0.95) benign(0) TCGA-FW-A3R5-06 8 71499399 71499399 G A TRAM1 Missense_Mutation p.R195C 0.27 deleterious(0.02) probably_damaging(0.982) TCGA-FW-A3R5-06 8 72111608 72111608 G A EYA1 Silent p.A582A 0.25 TCGA-FW-A3R5-06 8 72129198 72129198 A T EYA1 Splice_Site p.X400_splice 0.29 TCGA-FW-A3R5-06 8 72233974 72233974 G A EYA1 Missense_Mutation p.S138L 0.24 deleterious(0) benign(0.087) TCGA-FW-A3R5-06 8 72233977 72233977 G A EYA1 Missense_Mutation p.S137F 0.30 deleterious(0) possibly_damaging(0.667) TCGA-FW-A3R5-06 8 72234479 72234479 G A EYA1 Missense_Mutation p.P76L 0.22 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 72267089 72267089 C T EYA1 Missense_Mutation p.E18K 0.27 tolerated_low_confidence(0.05) benign(0.189) TCGA-FW-A3R5-06 8 72945959 72945959 C T TRPA1 Missense_Mutation p.E930K 0.13 tolerated(0.38) benign(0.159) TCGA-FW-A3R5-06 8 7320262 7320262 C T SPAG11B Missense_Mutation p.D61N 0.12 tolerated(0.74) benign(0.227) TCGA-FW-A3R5-06 8 73479976 73479976 G A KCNB2 Missense_Mutation p.E3K 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-FW-A3R5-06 8 73480105 73480105 C T KCNB2 Missense_Mutation p.H46Y 0.34 deleterious(0.02) probably_damaging(0.912) TCGA-FW-A3R5-06 8 73480155 73480155 G A KCNB2 Silent p.G62G 0.18 TCGA-FW-A3R5-06 8 73480281 73480281 G A KCNB2 Silent p.R104R 0.30 TCGA-FW-A3R5-06 8 73848257 73848257 G A KCNB2 Missense_Mutation p.E223K 0.32 tolerated(0.07) benign(0.008) TCGA-FW-A3R5-06 8 73848367 73848367 G A KCNB2 Nonsense_Mutation p.W259* 0.24 TCGA-FW-A3R5-06 8 73848668 73848668 G A KCNB2 Missense_Mutation p.E360K 0.18 deleterious(0) possibly_damaging(0.491) TCGA-FW-A3R5-06 8 73848916 73848916 G A KCNB2 Silent p.R442R 0.22 TCGA-FW-A3R5-06 8 73849489 73849489 C T KCNB2 Silent p.F633F 0.24 TCGA-FW-A3R5-06 8 73849514 73849514 G A KCNB2 Missense_Mutation p.E642K 0.26 tolerated_low_confidence(0.43) possibly_damaging(0.532) TCGA-FW-A3R5-06 8 73849774 73849774 G A KCNB2 Silent p.Q728Q 0.34 TCGA-FW-A3R5-06 8 74600939 74600939 A G STAU2 Missense_Mutation p.L75P 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 74722759 74722759 G A UBE2W Nonsense_Mutation p.Q146* 0.25 TCGA-FW-A3R5-06 8 74893874 74893874 C T TMEM70 3'UTR 0.17 TCGA-FW-A3R5-06 8 75156789 75156789 G A JPH1 Missense_Mutation p.P627L 0.15 tolerated(0.17) benign(0.055) TCGA-FW-A3R5-06 8 75157303 75157303 A T JPH1 Missense_Mutation p.Y456N 0.11 deleterious(0.04) probably_damaging(0.969) TCGA-FW-A3R5-06 8 75227339 75227339 G A JPH1 Missense_Mutation p.S299F 0.14 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 8 76463724 76463724 C T HNF4G Missense_Mutation p.R152C 0.20 tolerated(0.07) benign(0.013) TCGA-FW-A3R5-06 8 76468259 76468259 G A HNF4G Missense_Mutation p.G220R 0.19 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 76472668 76472668 C T HNF4G Missense_Mutation p.P395S 0.20 tolerated(0.63) benign(0) TCGA-FW-A3R5-06 8 76476385 76476385 G A HNF4G 3'UTR 0.14 TCGA-FW-A3R5-06 8 77617473 77617473 G A ZFHX4 Missense_Mutation p.G384R 0.21 probably_damaging(0.979) TCGA-FW-A3R5-06 8 77618198 77618198 G A ZFHX4 Silent p.S625S 0.27 TCGA-FW-A3R5-06 8 77619947 77619947 C T ZFHX4 Silent p.A919A 0.11 TCGA-FW-A3R5-06 8 77762534 77762534 C T ZFHX4 Silent p.A1300A 0.42 TCGA-FW-A3R5-06 8 77764842 77764842 C T ZFHX4 Silent p.I1895I 0.30 TCGA-FW-A3R5-06 8 77765989 77765989 C T ZFHX4 Missense_Mutation p.R2278C 0.19 probably_damaging(0.998) TCGA-FW-A3R5-06 8 77766120 77766120 C T ZFHX4 Silent p.F2321F 0.32 TCGA-FW-A3R5-06 8 77766216 77766216 G A ZFHX4 Missense_Mutation p.M2353I 0.25 benign(0.054) TCGA-FW-A3R5-06 8 77766837 77766837 C T ZFHX4 Silent p.P2560P 0.20 TCGA-FW-A3R5-06 8 77767332 77767332 G A ZFHX4 Silent p.Q2725Q 0.14 TCGA-FW-A3R5-06 8 77768152 77768152 C T ZFHX4 Nonsense_Mutation p.Q2999* 0.32 TCGA-FW-A3R5-06 8 77896041 77896041 C T PEX2 Missense_Mutation p.R125Q 0.29 tolerated(0.52) benign(0.016) TCGA-FW-A3R5-06 8 79513998 79513998 G A PKIA Missense_Mutation p.R58Q 0.19 tolerated(0.51) benign(0.001) TCGA-FW-A3R5-06 8 79629625 79629625 C T ZC2HC1A Missense_Mutation p.S292L 0.28 deleterious(0.02) benign(0.005) TCGA-FW-A3R5-06 8 79629664 79629664 C A ZC2HC1A Missense_Mutation p.T305N 0.30 deleterious(0) possibly_damaging(0.889) TCGA-FW-A3R5-06 8 79629673 79629673 C T ZC2HC1A Missense_Mutation p.P308L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 79710412 79710412 G A IL7 Silent p.P14P 0.20 TCGA-FW-A3R5-06 8 80523390 80523390 C T STMN2 5'UTR 0.17 TCGA-FW-A3R5-06 8 80567198 80567198 C T STMN2 Silent p.F127F 0.31 TCGA-FW-A3R5-06 8 8176141 8176141 G A SGK223 Silent p.F1248F 0.29 TCGA-FW-A3R5-06 8 8176468 8176468 G A SGK223 Silent p.I1139I 0.08 TCGA-FW-A3R5-06 8 8185497 8185497 G A SGK223 Missense_Mutation p.T932I 0.17 benign(0.235) TCGA-FW-A3R5-06 8 8234014 8234014 G A SGK223 Silent p.C635C 0.23 TCGA-FW-A3R5-06 8 8234487 8234487 G A SGK223 Missense_Mutation p.H478Y 0.17 benign(0.433) TCGA-FW-A3R5-06 8 8235340 8235340 G A SGK223 Silent p.P193P 0.24 TCGA-FW-A3R5-06 8 82357106 82357106 G A PMP2 Silent p.S64S 0.18 TCGA-FW-A3R5-06 8 82357107 82357107 G A PMP2 Missense_Mutation p.S64F 0.18 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 8 82441730 82441730 G A FABP12 Silent p.I63I 0.32 TCGA-FW-A3R5-06 8 82670728 82670728 G A CHMP4C Silent p.R217R 0.18 TCGA-FW-A3R5-06 8 8560001 8560001 G A CLDN23 Silent p.R31R 0.31 TCGA-FW-A3R5-06 8 86049712 86049712 C T LRRCC1 Silent p.A781A 0.19 TCGA-FW-A3R5-06 8 86163062 86163062 C T CA13 Missense_Mutation p.S44F 0.32 deleterious(0.05) benign(0.072) TCGA-FW-A3R5-06 8 86358415 86358415 C T CA3 Silent p.F184F 0.24 TCGA-FW-A3R5-06 8 86360402 86360402 C T CA3 3'UTR 0.19 TCGA-FW-A3R5-06 8 86386565 86386565 C T CA2 Missense_Mutation p.H122Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 8 86389422 86389422 C T CA2 Missense_Mutation p.P194L 0.12 tolerated(0.36) benign(0.038) TCGA-FW-A3R5-06 8 86392931 86392931 G A CA2 Silent p.G232G 0.33 TCGA-FW-A3R5-06 8 87076221 87076221 C T PSKH2 Silent p.L275L 0.18 TCGA-FW-A3R5-06 8 87076389 87076389 C T PSKH2 Missense_Mutation p.M219I 0.08 tolerated(0.06) benign(0.05) TCGA-FW-A3R5-06 8 87076588 87076588 C T PSKH2 Missense_Mutation p.G153E 0.21 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 8 87151852 87151852 G A ATP6V0D2 Missense_Mutation p.E157K 0.29 deleterious(0) probably_damaging(0.934) TCGA-FW-A3R5-06 8 87229775 87229775 G A SLC7A13 Missense_Mutation p.S368L 0.19 tolerated(0.75) possibly_damaging(0.771) TCGA-FW-A3R5-06 8 87229949 87229949 G A SLC7A13 Missense_Mutation p.S310L 0.25 tolerated(0.76) benign(0.01) TCGA-FW-A3R5-06 8 87235216 87235216 C T SLC7A13 Missense_Mutation p.E268K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 87241866 87241866 C T SLC7A13 Missense_Mutation p.G214E 0.23 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 8 87241867 87241867 C T SLC7A13 Missense_Mutation p.G214R 0.31 deleterious(0) probably_damaging(0.954) TCGA-FW-A3R5-06 8 87242557 87242557 C T SLC7A13 5'UTR 0.29 TCGA-FW-A3R5-06 8 87392992 87392992 C T WWP1 Silent p.F36F 0.19 TCGA-FW-A3R5-06 8 87557009 87557009 C T CPNE3 Silent p.L225L 0.32 TCGA-FW-A3R5-06 8 87587976 87587976 C T CNGB3 3'UTR 0.38 TCGA-FW-A3R5-06 8 87591451 87591451 C T CNGB3 Missense_Mutation p.R604Q 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-FW-A3R5-06 8 87645063 87645063 C T CNGB3 Missense_Mutation p.E413K 0.27 deleterious(0.01) benign(0.141) TCGA-FW-A3R5-06 8 87656093 87656093 C T CNGB3 Missense_Mutation p.R355Q 0.31 deleterious(0.02) possibly_damaging(0.805) TCGA-FW-A3R5-06 8 87679347 87679347 G A CNGB3 Silent p.L220L 0.20 TCGA-FW-A3R5-06 8 87679348 87679348 G A CNGB3 Silent p.L219L 0.21 TCGA-FW-A3R5-06 8 87679359 87679359 G A CNGB3 Nonsense_Mutation p.R216* 0.27 TCGA-FW-A3R5-06 8 87683257 87683257 C T CNGB3 Silent p.V136V 0.23 TCGA-FW-A3R5-06 8 87917351 87917351 G A CNBD1 Missense_Mutation p.M67I 0.21 tolerated(0.61) benign(0.001) TCGA-FW-A3R5-06 8 88249327 88249327 C T CNBD1 Missense_Mutation p.S253L 0.31 tolerated(0.12) benign(0.006) TCGA-FW-A3R5-06 8 88885216 88885216 G A DCAF4L2 Silent p.V328V 0.24 TCGA-FW-A3R5-06 8 88885275 88885275 C T DCAF4L2 Missense_Mutation p.E309K 0.16 tolerated(0.59) benign(0.012) TCGA-FW-A3R5-06 8 88886058 88886058 C T DCAF4L2 Missense_Mutation p.E48K 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 89068470 89068470 T G MMP16 Missense_Mutation p.Q420P 0.31 deleterious(0.02) possibly_damaging(0.873) TCGA-FW-A3R5-06 8 89128865 89128865 C T MMP16 Silent p.R318R 0.28 TCGA-FW-A3R5-06 8 8998360 8998360 G A PPP1R3B Silent p.L268L 0.27 TCGA-FW-A3R5-06 8 8998398 8998398 G A PPP1R3B Missense_Mutation p.S255F 0.16 deleterious(0.02) benign(0.333) TCGA-FW-A3R5-06 8 8998909 8998909 G A PPP1R3B Missense_Mutation p.P85S 0.07 tolerated(0.14) benign(0.11) TCGA-FW-A3R5-06 8 91075654 91075654 C T CALB1 Silent p.L162L 0.21 TCGA-FW-A3R5-06 8 92307812 92307812 C T SLC26A7 Missense_Mutation p.P120S 0.25 deleterious(0.01) possibly_damaging(0.453) TCGA-FW-A3R5-06 8 92346621 92346621 G A SLC26A7 Silent p.L247L 0.32 TCGA-FW-A3R5-06 8 92401568 92401568 G A SLC26A7 Missense_Mutation p.E560K 0.33 tolerated(0.21) possibly_damaging(0.542) TCGA-FW-A3R5-06 8 92999147 92999147 C T RUNX1T1 Missense_Mutation p.E360K 0.28 deleterious(0.02) possibly_damaging(0.735) TCGA-FW-A3R5-06 8 93017344 93017344 C T RUNX1T1 Missense_Mutation p.R258K 0.20 deleterious(0) possibly_damaging(0.718) TCGA-FW-A3R5-06 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.17 deleterious(0.03) benign(0.185) TCGA-FW-A3R5-06 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.10 deleterious(0.02) possibly_damaging(0.887) TCGA-FW-A3R5-06 8 93017381 93017381 C T RUNX1T1 Missense_Mutation p.D246N 0.17 deleterious(0.03) benign(0.349) TCGA-FW-A3R5-06 8 93029461 93029461 C T RUNX1T1 Silent p.P84P 0.15 TCGA-FW-A3R5-06 8 94746701 94746701 G A RBM12B Silent p.L646L 0.15 TCGA-FW-A3R5-06 8 94822081 94822081 C T TMEM67 Silent p.F910F 0.24 TCGA-FW-A3R5-06 8 94935499 94935499 C T PDP1 Silent p.H429H 0.25 TCGA-FW-A3R5-06 8 95142932 95142932 G A CDH17 Missense_Mutation p.R774W 0.28 tolerated(0.06) possibly_damaging(0.696) TCGA-FW-A3R5-06 8 95265325 95265325 C T GEM Missense_Mutation p.R116Q 0.34 tolerated(0.08) benign(0.103) TCGA-FW-A3R5-06 8 95403849 95403849 G A RAD54B Silent p.F599F 0.30 TCGA-FW-A3R5-06 8 95423541 95423541 G A RAD54B Missense_Mutation p.H103Y 0.40 tolerated(0.84) benign(0.001) TCGA-FW-A3R5-06 8 95500992 95500992 C T KIAA1429 Missense_Mutation p.G1794E 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-FW-A3R5-06 8 95676990 95676990 C T ESRP1 Missense_Mutation p.S237L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 8 95680211 95680211 G A ESRP1 Silent p.K322K 0.26 TCGA-FW-A3R5-06 8 95680230 95680230 C T ESRP1 Missense_Mutation p.R329C 0.22 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 95683710 95683710 C T ESRP1 Silent p.L421L 0.15 TCGA-FW-A3R5-06 8 95777493 95777493 C T DPY19L4 Missense_Mutation p.S318F 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 8 9609185 9609185 C T TNKS Missense_Mutation p.P967S 0.15 tolerated(0.14) probably_damaging(0.986) TCGA-FW-A3R5-06 8 9623815 9623815 T G TNKS Missense_Mutation p.M1207R 0.30 deleterious(0) possibly_damaging(0.653) TCGA-FW-A3R5-06 8 97157007 97157007 C T GDF6 Silent p.E384E 0.41 TCGA-FW-A3R5-06 8 97258141 97258141 G A MTERFD1 Missense_Mutation p.R282C 0.20 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 8 97345829 97345829 C T PTDSS1 3'UTR 0.21 TCGA-FW-A3R5-06 8 98288962 98288962 C T TSPYL5 Missense_Mutation p.E371K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 8 98288972 98288972 C T TSPYL5 Silent p.E367E 0.21 TCGA-FW-A3R5-06 8 98289598 98289598 C T TSPYL5 Missense_Mutation p.G159R 0.28 deleterious(0.03) possibly_damaging(0.796) TCGA-FW-A3R5-06 8 98289599 98289599 C T TSPYL5 Silent p.R158R 0.29 TCGA-FW-A3R5-06 8 99039822 99039822 C T MATN2 Silent p.F707F 0.16 TCGA-FW-A3R5-06 8 99101478 99101478 C T C8orf47 Missense_Mutation p.P78L 0.21 deleterious(0.02) benign(0.116) TCGA-FW-A3R5-06 8 99441317 99441317 C T KCNS2 Silent p.V370V 0.32 TCGA-FW-A3R5-06 8 99441587 99441587 G A KCNS2 Silent p.T460T 0.32 TCGA-FW-A3R5-06 8 99441632 99441632 C T KCNS2 Silent p.S475S 0.21 TCGA-FW-A3R5-06 8 99961684 99961684 G A OSR2 Silent p.T168T 0.24 TCGA-FW-A3R5-06 9 100190865 100190865 C T TDRD7 Missense_Mutation p.P40S 0.20 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 9 100235830 100235830 C T TDRD7 Silent p.L667L 0.07 TCGA-FW-A3R5-06 9 100459601 100459601 C T XPA 5'UTR 0.23 TCGA-FW-A3R5-06 9 100692463 100692463 G A HEMGN Missense_Mutation p.P405L 0.32 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 9 100693400 100693400 C T HEMGN Missense_Mutation p.E93K 0.18 tolerated(0.31) possibly_damaging(0.801) TCGA-FW-A3R5-06 9 100890474 100890474 C T CORO2A Silent p.E383E 0.26 TCGA-FW-A3R5-06 9 101052900 101052900 G A GABBR2 Missense_Mutation p.P931L 0.41 deleterious_low_confidence(0.01) benign(0.086) TCGA-FW-A3R5-06 9 101546431 101546431 G A ANKS6 Nonsense_Mutation p.Q306* 0.30 TCGA-FW-A3R5-06 9 101585705 101585705 G T GALNT12 Missense_Mutation p.R180I 0.18 tolerated(0.07) benign(0.084) TCGA-FW-A3R5-06 9 101608265 101608265 G A GALNT12 Missense_Mutation p.E489K 0.12 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 101748012 101748012 G A COL15A1 Missense_Mutation p.R89K 0.14 tolerated(0.11) benign(0.068) TCGA-FW-A3R5-06 9 101748315 101748315 C T COL15A1 Missense_Mutation p.S190F 0.32 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 101765820 101765820 G A COL15A1 Missense_Mutation p.G384E 0.41 tolerated_low_confidence(0.11) benign(0.058) TCGA-FW-A3R5-06 9 101767275 101767275 C T COL15A1 Silent p.A432A 0.18 TCGA-FW-A3R5-06 9 101778392 101778392 G A COL15A1 Nonsense_Mutation p.W546* 0.14 TCGA-FW-A3R5-06 9 101797320 101797320 C T COL15A1 Missense_Mutation p.P702S 0.15 tolerated(0.09) benign(0.053) TCGA-FW-A3R5-06 9 101818645 101818645 G A COL15A1 Missense_Mutation p.G1099E 0.23 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 101818647 101818647 C T COL15A1 Missense_Mutation p.P1100S 0.17 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 9 101818648 101818648 C T COL15A1 Missense_Mutation p.P1100L 0.17 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 9 102607113 102607113 C T NR4A3 Silent p.V490V 0.30 TCGA-FW-A3R5-06 9 102609857 102609857 C T NR4A3 Silent p.I542I 0.08 TCGA-FW-A3R5-06 9 103090189 103090189 G A TEX10 Missense_Mutation p.H561Y 0.33 tolerated(0.77) benign(0.001) TCGA-FW-A3R5-06 9 103109210 103109210 G A TEX10 Missense_Mutation p.S220F 0.16 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 9 104032266 104032266 G A LPPR1 Missense_Mutation p.M56I 0.21 tolerated(0.15) benign(0.039) TCGA-FW-A3R5-06 9 104032305 104032305 C T LPPR1 Silent p.T69T 0.13 TCGA-FW-A3R5-06 9 104048451 104048451 G A LPPR1 Silent p.E106E 0.12 TCGA-FW-A3R5-06 9 104075163 104075163 C T LPPR1 Silent p.F240F 0.20 TCGA-FW-A3R5-06 9 104075171 104075171 G A LPPR1 Missense_Mutation p.G243D 0.20 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 9 104086453 104086453 G A LPPR1 3'UTR 0.44 TCGA-FW-A3R5-06 9 104125001 104125001 G A BAAT Silent p.F322F 0.24 TCGA-FW-A3R5-06 9 104125158 104125158 T A BAAT Missense_Mutation p.Y270F 0.33 deleterious(0.03) probably_damaging(0.962) TCGA-FW-A3R5-06 9 104184165 104184165 C T ALDOB Missense_Mutation p.G341R 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3R5-06 9 104189916 104189916 C T ALDOB Missense_Mutation p.G130S 0.35 tolerated(0.07) possibly_damaging(0.808) TCGA-FW-A3R5-06 9 104192174 104192174 G A ALDOB Missense_Mutation p.L63F 0.33 deleterious(0.02) possibly_damaging(0.869) TCGA-FW-A3R5-06 9 104238223 104238223 G A TMEM246 Silent p.L384L 0.37 TCGA-FW-A3R5-06 9 104238436 104238436 G A TMEM246 Silent p.F313F 0.38 TCGA-FW-A3R5-06 9 104238592 104238592 C T TMEM246 Silent p.R261R 0.45 TCGA-FW-A3R5-06 9 104239033 104239033 G A TMEM246 Silent p.G114G 0.09 TCGA-FW-A3R5-06 9 104239109 104239109 G A TMEM246 Missense_Mutation p.S89L 0.41 tolerated(0.22) benign(0.258) TCGA-FW-A3R5-06 9 104302572 104302572 C T RNF20 Missense_Mutation p.R73C 0.22 deleterious(0) benign(0.001) TCGA-FW-A3R5-06 9 104312939 104312939 C T RNF20 Missense_Mutation p.R382C 0.41 deleterious(0) possibly_damaging(0.689) TCGA-FW-A3R5-06 9 104341555 104341555 C T GRIN3A Missense_Mutation p.E952K 0.17 deleterious(0.01) benign(0.034) TCGA-FW-A3R5-06 9 104356906 104356906 C T PPP3R2 Missense_Mutation p.D103N 0.20 deleterious(0) probably_damaging(0.952) TCGA-FW-A3R5-06 9 104432383 104432383 C T GRIN3A Missense_Mutation p.E771K 0.37 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 9 104432595 104432595 G A GRIN3A Missense_Mutation p.P700L 0.07 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 104432962 104432962 C T GRIN3A Missense_Mutation p.G578R 0.42 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 104433089 104433089 G A GRIN3A Silent p.G535G 0.37 TCGA-FW-A3R5-06 9 104449186 104449186 C T GRIN3A Missense_Mutation p.M332I 0.24 tolerated(0.26) benign(0.002) TCGA-FW-A3R5-06 9 104449242 104449242 G A GRIN3A Nonsense_Mutation p.Q314* 0.34 TCGA-FW-A3R5-06 9 104499567 104499567 C T GRIN3A Missense_Mutation p.S232N 0.26 tolerated(0.13) possibly_damaging(0.448) TCGA-FW-A3R5-06 9 1057157 1057157 G A DMRT2 Missense_Mutation p.D524N 0.10 deleterious_low_confidence(0.04) probably_damaging(0.962) TCGA-FW-A3R5-06 9 105766974 105766974 C T CYLC2 Intron 0.19 TCGA-FW-A3R5-06 9 105767248 105767248 C T CYLC2 Intron 0.34 TCGA-FW-A3R5-06 9 105767302 105767302 C T CYLC2 Missense_Mutation p.S130L 0.32 tolerated(0.16) possibly_damaging(0.743) TCGA-FW-A3R5-06 9 105767335 105767335 C T CYLC2 Missense_Mutation p.S141L 0.21 tolerated(0.3) unknown(0) TCGA-FW-A3R5-06 9 105767500 105767500 C T CYLC2 Missense_Mutation p.S196L 0.16 deleterious(0) unknown(0) TCGA-FW-A3R5-06 9 105767661 105767661 G A CYLC2 Missense_Mutation p.D250N 0.15 tolerated(0.18) unknown(0) TCGA-FW-A3R5-06 9 105767873 105767873 G A CYLC2 Silent p.K320K 0.21 TCGA-FW-A3R5-06 9 105768171 105768171 C T CYLC2 3'UTR 0.33 TCGA-FW-A3R5-06 9 107266583 107266583 T C OR13F1 Missense_Mutation p.F14L 0.12 tolerated(1) benign(0.015) TCGA-FW-A3R5-06 9 107267485 107267485 C T OR13F1 Silent p.F314F 0.25 TCGA-FW-A3R5-06 9 107288793 107288793 C T OR13C4 Missense_Mutation p.G233E 0.33 deleterious(0.02) probably_damaging(0.929) TCGA-FW-A3R5-06 9 107288831 107288831 G A OR13C4 Silent p.F220F 0.15 TCGA-FW-A3R5-06 9 107288840 107288840 G A OR13C4 Silent p.S217S 0.08 TCGA-FW-A3R5-06 9 107289148 107289148 G A OR13C4 Missense_Mutation p.L115F 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 107289353 107289353 G A OR13C4 Silent p.I46I 0.30 TCGA-FW-A3R5-06 9 107289451 107289451 G A OR13C4 Missense_Mutation p.L14F 0.09 deleterious(0.05) benign(0.04) TCGA-FW-A3R5-06 9 107298450 107298450 G A OR13C3 Silent p.L215L 0.22 TCGA-FW-A3R5-06 9 107298516 107298516 G A OR13C3 Silent p.A193A 0.31 TCGA-FW-A3R5-06 9 107360936 107360936 C T OR13C5 Silent p.G253G 0.19 TCGA-FW-A3R5-06 9 107361191 107361191 G A OR13C5 Silent p.F168F 0.09 TCGA-FW-A3R5-06 9 107361307 107361307 G A OR13C5 Silent p.L130L 0.17 TCGA-FW-A3R5-06 9 107361655 107361655 G A OR13C5 Silent p.L14L 0.20 TCGA-FW-A3R5-06 9 107367179 107367179 G A OR13C2 Missense_Mutation p.H244Y 0.33 deleterious(0) possibly_damaging(0.654) TCGA-FW-A3R5-06 9 107367193 107367193 G A OR13C2 Missense_Mutation p.S239F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 9 107367211 107367211 C T OR13C2 Missense_Mutation p.G233E 0.27 deleterious(0.02) benign(0.257) TCGA-FW-A3R5-06 9 107367630 107367630 G A OR13C2 Silent p.S93S 0.19 TCGA-FW-A3R5-06 9 107367863 107367863 C T OR13C2 Missense_Mutation p.G16R 0.16 deleterious(0.01) benign(0.128) TCGA-FW-A3R5-06 9 107367888 107367888 G A OR13C2 Silent p.T7T 0.18 TCGA-FW-A3R5-06 9 107379817 107379817 G A OR13C9 Silent p.S223S 0.35 TCGA-FW-A3R5-06 9 107380046 107380046 C T OR13C9 Missense_Mutation p.G147E 0.37 tolerated(0.27) possibly_damaging(0.745) TCGA-FW-A3R5-06 9 107380208 107380208 G A OR13C9 Missense_Mutation p.S93F 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 9 107576396 107576396 G A ABCA1 Intron 0.38 TCGA-FW-A3R5-06 9 107646739 107646739 G A ABCA1 Missense_Mutation p.P91S 0.23 deleterious(0.03) possibly_damaging(0.576) TCGA-FW-A3R5-06 9 108127887 108127887 C T SLC44A1 Silent p.I459I 0.24 TCGA-FW-A3R5-06 9 108425072 108425072 C T TAL2 Missense_Mutation p.P99S 0.27 tolerated(0.5) benign(0) TCGA-FW-A3R5-06 9 109686778 109686778 C T ZNF462 Silent p.P195P 0.33 TCGA-FW-A3R5-06 9 109688977 109688977 G A ZNF462 Silent p.R928R 0.08 TCGA-FW-A3R5-06 9 109690130 109690130 C T ZNF462 Missense_Mutation p.H1313Y 0.09 probably_damaging(0.995) TCGA-FW-A3R5-06 9 110081045 110081045 C A RAD23B Missense_Mutation p.S189Y 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A3R5-06 9 110249798 110249798 G A KLF4 Missense_Mutation p.P293S 0.15 tolerated(0.48) benign(0.002) TCGA-FW-A3R5-06 9 111617544 111617544 C T ACTL7B Missense_Mutation p.D223N 0.17 tolerated(0.05) possibly_damaging(0.862) TCGA-FW-A3R5-06 9 111617754 111617754 G A ACTL7B Missense_Mutation p.P153S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 9 111624631 111624631 G A ACTL7A Missense_Mutation p.G10E 0.25 deleterious_low_confidence(0) benign(0.314) TCGA-FW-A3R5-06 9 111625524 111625524 G A ACTL7A Missense_Mutation p.E308K 0.29 tolerated(0.05) benign(0.004) TCGA-FW-A3R5-06 9 111812952 111812952 G A TMEM245 Silent p.I625I 0.27 TCGA-FW-A3R5-06 9 111903821 111903821 G A FRRS1L Missense_Mutation p.R222C 0.43 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 9 111911944 111911944 C T FRRS1L Missense_Mutation p.D150N 0.09 deleterious(0.05) benign(0.182) TCGA-FW-A3R5-06 9 111936872 111936872 C T EPB41L4B Missense_Mutation p.E889K 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FW-A3R5-06 9 111979231 111979231 G A EPB41L4B Missense_Mutation p.S535F 0.21 tolerated(0.69) benign(0.008) TCGA-FW-A3R5-06 9 112018759 112018759 C T EPB41L4B Missense_Mutation p.G252R 0.19 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 9 112020521 112020521 G A EPB41L4B Missense_Mutation p.R230W 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 112029769 112029769 G A EPB41L4B Missense_Mutation p.R173C 0.37 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 9 112141817 112141817 G A PTPN3 3'UTR 0.32 TCGA-FW-A3R5-06 9 112144721 112144721 C T PTPN3 Missense_Mutation p.E797K 0.55 deleterious(0.01) benign(0.42) TCGA-FW-A3R5-06 9 112145801 112145801 G A PTPN3 Missense_Mutation p.P762S 0.19 tolerated(0.44) probably_damaging(0.995) TCGA-FW-A3R5-06 9 112172609 112172609 G A PTPN3 Missense_Mutation p.S467F 0.34 tolerated(0.13) possibly_damaging(0.62) TCGA-FW-A3R5-06 9 112705119 112705119 G A PALM2 Missense_Mutation p.G217E 0.08 tolerated(0.37) benign(0.076) TCGA-FW-A3R5-06 9 112705447 112705447 G A PALM2 Silent p.T326T 0.29 TCGA-FW-A3R5-06 9 112899021 112899021 C T PALM2-AKAP2 Silent p.F399F 0.30 TCGA-FW-A3R5-06 9 112899267 112899267 C T PALM2-AKAP2 Silent p.I481I 0.26 TCGA-FW-A3R5-06 9 112963090 112963090 C T C9orf152 3'UTR 0.53 TCGA-FW-A3R5-06 9 112963360 112963360 G A C9orf152 Silent p.F196F 0.12 TCGA-FW-A3R5-06 9 112963511 112963511 C T C9orf152 Missense_Mutation p.G146E 0.28 tolerated(0.36) benign(0.063) TCGA-FW-A3R5-06 9 112963672 112963672 T C C9orf152 Silent p.E92E 0.14 TCGA-FW-A3R5-06 9 113163237 113163237 G A SVEP1 Missense_Mutation p.S3240F 0.22 benign(0.049) TCGA-FW-A3R5-06 9 113166771 113166771 G A SVEP1 Missense_Mutation p.R3168C 0.36 possibly_damaging(0.773) TCGA-FW-A3R5-06 9 113168633 113168633 C T SVEP1 Missense_Mutation p.E3083K 0.22 benign(0.042) TCGA-FW-A3R5-06 9 113169251 113169251 C T SVEP1 Missense_Mutation p.G2877R 0.25 probably_damaging(0.994) TCGA-FW-A3R5-06 9 113169566 113169566 C T SVEP1 Missense_Mutation p.A2772T 0.30 benign(0.184) TCGA-FW-A3R5-06 9 113169985 113169985 C T SVEP1 Missense_Mutation p.G2632E 0.19 benign(0.002) TCGA-FW-A3R5-06 9 113170685 113170685 G A SVEP1 Missense_Mutation p.H2399Y 0.24 benign(0.006) TCGA-FW-A3R5-06 9 113171163 113171163 T G SVEP1 Silent p.G2239G 0.11 TCGA-FW-A3R5-06 9 113173432 113173432 C T SVEP1 Missense_Mutation p.E2187K 0.25 possibly_damaging(0.853) TCGA-FW-A3R5-06 9 113196700 113196700 C T SVEP1 Missense_Mutation p.D1659N 0.26 possibly_damaging(0.46) TCGA-FW-A3R5-06 9 113208245 113208245 G A SVEP1 Silent p.L1445L 0.21 TCGA-FW-A3R5-06 9 113212415 113212415 C T SVEP1 Missense_Mutation p.G1343R 0.09 benign(0.044) TCGA-FW-A3R5-06 9 113238390 113238390 G A SVEP1 Intron 0.25 TCGA-FW-A3R5-06 9 113276350 113276350 G A SVEP1 Missense_Mutation p.P334L 0.47 probably_damaging(1) TCGA-FW-A3R5-06 9 113312259 113312259 G A SVEP1 Silent p.F219F 0.19 TCGA-FW-A3R5-06 9 113496530 113496530 G A MUSK Splice_Site p.X210_splice 0.23 TCGA-FW-A3R5-06 9 113496541 113496541 G A MUSK Silent p.R213R 0.19 TCGA-FW-A3R5-06 9 113538213 113538213 C T MUSK Missense_Mutation p.P444S 0.07 deleterious(0.04) possibly_damaging(0.567) TCGA-FW-A3R5-06 9 113547155 113547155 C T MUSK Missense_Mutation p.S482F 0.35 deleterious(0.03) benign(0.009) TCGA-FW-A3R5-06 9 113547238 113547238 C T MUSK Missense_Mutation p.L510F 0.25 tolerated(0.19) benign(0.018) TCGA-FW-A3R5-06 9 113549986 113549986 C T MUSK Missense_Mutation p.P599S 0.27 tolerated(0.08) benign(0.07) TCGA-FW-A3R5-06 9 113562671 113562671 C T MUSK Silent p.S671S 0.22 TCGA-FW-A3R5-06 9 113562887 113562887 C T MUSK Silent p.D743D 0.29 TCGA-FW-A3R5-06 9 113637901 113637901 G A LPAR1 Missense_Mutation p.L299F 0.30 deleterious(0) benign(0.354) TCGA-FW-A3R5-06 9 113703756 113703756 G A LPAR1 Silent p.P246P 0.29 TCGA-FW-A3R5-06 9 113703917 113703917 C T LPAR1 Missense_Mutation p.E193K 0.35 tolerated(0.59) benign(0) TCGA-FW-A3R5-06 9 113704124 113704124 G A LPAR1 Missense_Mutation p.R124C 0.25 deleterious(0) possibly_damaging(0.727) TCGA-FW-A3R5-06 9 113734492 113734492 G A LPAR1 5'UTR 0.29 TCGA-FW-A3R5-06 9 114090282 114090282 C T OR2K2 Missense_Mutation p.M144I 0.29 tolerated(0.18) benign(0.01) TCGA-FW-A3R5-06 9 114090533 114090533 A G OR2K2 Silent p.L61L 0.20 TCGA-FW-A3R5-06 9 114145514 114145514 G A KIAA0368 Silent p.T1438T 0.42 TCGA-FW-A3R5-06 9 114289645 114289645 G A ZNF483 5'UTR 0.37 TCGA-FW-A3R5-06 9 114289764 114289764 G A ZNF483 Missense_Mutation p.R30K 0.42 tolerated(0.8) benign(0) TCGA-FW-A3R5-06 9 114289975 114289975 C T ZNF483 Silent p.F100F 0.31 TCGA-FW-A3R5-06 9 114290179 114290179 G A ZNF483 Intron 0.47 TCGA-FW-A3R5-06 9 114296106 114296106 G A ZNF483 Missense_Mutation p.E197K 0.41 tolerated(0.05) possibly_damaging(0.621) TCGA-FW-A3R5-06 9 114304291 114304291 G A ZNF483 Missense_Mutation p.R359Q 0.38 tolerated(0.33) benign(0.238) TCGA-FW-A3R5-06 9 114305109 114305109 G A ZNF483 Missense_Mutation p.E632K 0.18 deleterious(0) possibly_damaging(0.57) TCGA-FW-A3R5-06 9 114371455 114371455 C T LRRC37A5P RNA 0.11 TCGA-FW-A3R5-06 9 114503831 114503831 C T C9orf84 Missense_Mutation p.E303K 0.28 tolerated(0.16) possibly_damaging(0.453) TCGA-FW-A3R5-06 9 114874094 114874094 G A SUSD1 Silent p.D337D 0.31 TCGA-FW-A3R5-06 9 115422330 115422330 C T KIAA1958 Missense_Mutation p.S711F 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.642) TCGA-FW-A3R5-06 9 115760054 115760054 G A ZNF883 RNA 0.10 TCGA-FW-A3R5-06 9 115760080 115760080 C T ZNF883 RNA 0.09 TCGA-FW-A3R5-06 9 115760190 115760190 C T ZNF883 RNA 0.38 TCGA-FW-A3R5-06 9 115805519 115805519 G A ZFP37 Missense_Mutation p.P460L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 115806300 115806300 T C ZFP37 Missense_Mutation p.R200G 0.34 tolerated(0.16) benign(0.11) TCGA-FW-A3R5-06 9 115950740 115950740 G A FKBP15 Missense_Mutation p.P402L 0.09 deleterious(0) possibly_damaging(0.786) TCGA-FW-A3R5-06 9 116018469 116018469 C T SLC31A1 Missense_Mutation p.S14F 0.25 tolerated(0.67) benign(0.001) TCGA-FW-A3R5-06 9 116053831 116053831 C T PRPF4 Missense_Mutation p.T487I 0.09 deleterious(0) possibly_damaging(0.869) TCGA-FW-A3R5-06 9 116132056 116132056 C T BSPRY Silent p.F281F 0.31 TCGA-FW-A3R5-06 9 116132182 116132182 C T BSPRY Silent p.F323F 0.32 TCGA-FW-A3R5-06 9 116135807 116135807 G A HDHD3 3'UTR 0.27 TCGA-FW-A3R5-06 9 116136320 116136320 G A HDHD3 Silent p.F105F 0.22 TCGA-FW-A3R5-06 9 116155791 116155791 G A ALAD Missense_Mutation p.R17W 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 116175776 116175776 G A C9orf43 Translation_Start_Site p.M1? 0.40 deleterious(0.01) probably_damaging(0.969) TCGA-FW-A3R5-06 9 116224391 116224391 A G RGS3 Missense_Mutation p.S109G 0.10 tolerated_low_confidence(0.18) benign(0) TCGA-FW-A3R5-06 9 116226038 116226038 C T RGS3 Intron 0.29 TCGA-FW-A3R5-06 9 116241795 116241795 C T RGS3 Missense_Mutation p.A147V 0.24 tolerated(0.32) benign(0.008) TCGA-FW-A3R5-06 9 116285273 116285273 G A RGS3 Missense_Mutation p.D608N 0.09 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 9 116356332 116356332 C T RGS3 Intron 0.37 TCGA-FW-A3R5-06 9 116359280 116359280 C T RGS3 3'UTR 0.42 TCGA-FW-A3R5-06 9 116654 116654 A C FOXD4 3'UTR 0.12 TCGA-FW-A3R5-06 9 116779058 116779058 C T ZNF618 Missense_Mutation p.P268S 0.34 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 9 116811507 116811507 C T ZNF618 Missense_Mutation p.S549L 0.11 tolerated(0.15) benign(0.22) TCGA-FW-A3R5-06 9 116837253 116837253 G A AMBP Silent p.L108L 0.09 TCGA-FW-A3R5-06 9 116857374 116857374 G A KIF12 Missense_Mutation p.P212S 0.17 tolerated(0.27) probably_damaging(1) TCGA-FW-A3R5-06 9 116858451 116858451 G A KIF12 Missense_Mutation p.P121S 0.11 tolerated(0.26) benign(0.284) TCGA-FW-A3R5-06 9 116858707 116858707 C T KIF12 Missense_Mutation p.R95Q 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 116866 116866 C T FOXD4 Silent p.G418G 0.13 TCGA-FW-A3R5-06 9 116930318 116930318 C T COL27A1 Silent p.L161L 0.27 TCGA-FW-A3R5-06 9 116930445 116930445 C T COL27A1 Missense_Mutation p.P204S 0.26 unknown(0) TCGA-FW-A3R5-06 9 116930446 116930446 C T COL27A1 Missense_Mutation p.P204L 0.25 unknown(0) TCGA-FW-A3R5-06 9 116931269 116931269 C T COL27A1 Silent p.T478T 0.19 TCGA-FW-A3R5-06 9 116931709 116931709 G A COL27A1 Missense_Mutation p.G625E 0.14 unknown(0) TCGA-FW-A3R5-06 9 117072882 117072882 C T COL27A1 Silent p.P1830P 0.10 TCGA-FW-A3R5-06 9 117085466 117085466 C T ORM1 Missense_Mutation p.A18V 0.12 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 9 117087420 117087420 C T ORM1 Silent p.T176T 0.28 TCGA-FW-A3R5-06 9 117094122 117094122 G A ORM2 Silent p.T151T 0.28 TCGA-FW-A3R5-06 9 117103972 117103972 G A AKNA Missense_Mutation p.S1303F 0.17 deleterious(0.01) benign(0.305) TCGA-FW-A3R5-06 9 117118261 117118261 G A AKNA Missense_Mutation p.P1001L 0.43 deleterious(0) possibly_damaging(0.642) TCGA-FW-A3R5-06 9 117120290 117120290 G A AKNA Nonsense_Mutation p.Q884* 0.27 TCGA-FW-A3R5-06 9 117122238 117122238 G A AKNA Silent p.P743P 0.36 TCGA-FW-A3R5-06 9 117188502 117188502 C T DFNB31 Silent p.A385A 0.38 TCGA-FW-A3R5-06 9 117552767 117552767 C T TNFSF15 Missense_Mutation p.E241K 0.21 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 117552834 117552834 G A TNFSF15 Silent p.F218F 0.16 TCGA-FW-A3R5-06 9 117553124 117553124 C T TNFSF15 Missense_Mutation p.E122K 0.22 tolerated(0.6) benign(0.103) TCGA-FW-A3R5-06 9 117554722 117554722 C T TNFSF15 Missense_Mutation p.R89K 0.24 tolerated(0.66) benign(0.007) TCGA-FW-A3R5-06 9 117666367 117666367 C T TNFSF8 Silent p.T183T 0.34 TCGA-FW-A3R5-06 9 117666496 117666496 G A TNFSF8 Silent p.F140F 0.39 TCGA-FW-A3R5-06 9 117788850 117788850 G A TNC Silent p.R2098R 0.27 TCGA-FW-A3R5-06 9 117791663 117791663 C T TNC Missense_Mutation p.D2049N 0.22 tolerated(0.54) benign(0.122) TCGA-FW-A3R5-06 9 117803253 117803253 C T TNC Missense_Mutation p.E1787K 0.25 tolerated(0.41) probably_damaging(0.92) TCGA-FW-A3R5-06 9 117810748 117810748 G A TNC Missense_Mutation p.S1548F 0.18 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 9 117825450 117825450 C T TNC Missense_Mutation p.G1260E 0.31 tolerated(0.13) benign(0.132) TCGA-FW-A3R5-06 9 117849481 117849481 C T TNC Missense_Mutation p.E177K 0.25 deleterious(0) possibly_damaging(0.582) TCGA-FW-A3R5-06 9 117853292 117853292 C T TNC Silent p.G2G 0.51 TCGA-FW-A3R5-06 9 118969759 118969759 G A PAPPA Silent p.L501L 0.22 TCGA-FW-A3R5-06 9 118997857 118997857 C T PAPPA Silent p.D891D 0.10 TCGA-FW-A3R5-06 9 118997858 118997858 C T PAPPA Missense_Mutation p.P892S 0.09 deleterious(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 9 119033623 119033623 G A PAPPA Missense_Mutation p.D961N 0.27 deleterious(0) possibly_damaging(0.555) TCGA-FW-A3R5-06 9 119097170 119097170 C T PAPPA Missense_Mutation p.P1143L 0.17 deleterious(0) possibly_damaging(0.713) TCGA-FW-A3R5-06 9 119106955 119106955 C T PAPPA Nonsense_Mutation p.Q1249* 0.11 TCGA-FW-A3R5-06 9 119115959 119115959 C T PAPPA Missense_Mutation p.P1412S 0.38 deleterious(0.03) possibly_damaging(0.641) TCGA-FW-A3R5-06 9 119124924 119124924 C T PAPPA Silent p.S1467S 0.27 TCGA-FW-A3R5-06 9 119737566 119737566 G A ASTN2 Missense_Mutation p.P553S 0.11 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 9 119737589 119737589 G A ASTN2 Missense_Mutation p.P545L 0.25 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 9 119770441 119770441 G A ASTN2 Silent p.S456S 0.37 TCGA-FW-A3R5-06 9 119770494 119770494 C T ASTN2 Missense_Mutation p.D439N 0.23 tolerated(0.17) unknown(0) TCGA-FW-A3R5-06 9 120053765 120053765 G A ASTN2 Missense_Mutation p.S157L 0.21 deleterious_low_confidence(0.01) benign(0) TCGA-FW-A3R5-06 9 120474738 120474738 G A TLR4 Missense_Mutation p.G111E 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 120474838 120474838 C T TLR4 Silent p.F144F 0.29 TCGA-FW-A3R5-06 9 120475396 120475396 C T TLR4 Silent p.F330F 0.20 TCGA-FW-A3R5-06 9 120475717 120475717 G A TLR4 Missense_Mutation p.M437I 0.21 tolerated(0.44) benign(0.011) TCGA-FW-A3R5-06 9 120475910 120475910 G A TLR4 Missense_Mutation p.D502N 0.33 deleterious(0.04) probably_damaging(0.924) TCGA-FW-A3R5-06 9 120476041 120476041 C T TLR4 Silent p.S545S 0.16 TCGA-FW-A3R5-06 9 120476262 120476262 C T TLR4 Missense_Mutation p.P619L 0.18 tolerated(0.31) benign(0.004) TCGA-FW-A3R5-06 9 121929240 121929240 C T BRINP1 3'UTR 0.18 TCGA-FW-A3R5-06 9 121929478 121929478 G A BRINP1 Silent p.L724L 0.34 TCGA-FW-A3R5-06 9 121929783 121929783 C T BRINP1 Missense_Mutation p.R622Q 0.38 tolerated(0.06) possibly_damaging(0.885) TCGA-FW-A3R5-06 9 121929812 121929812 G A BRINP1 Silent p.F612F 0.32 TCGA-FW-A3R5-06 9 121929987 121929987 C T BRINP1 Missense_Mutation p.S554N 0.23 deleterious(0.01) benign(0.077) TCGA-FW-A3R5-06 9 121971092 121971092 C T BRINP1 Silent p.E350E 0.24 TCGA-FW-A3R5-06 9 121976080 121976080 G A BRINP1 Intron 0.14 TCGA-FW-A3R5-06 9 121976336 121976336 C T BRINP1 Silent p.Q261Q 0.17 TCGA-FW-A3R5-06 9 122075601 122075601 G A BRINP1 Silent p.F11F 0.20 TCGA-FW-A3R5-06 9 122075625 122075625 C T BRINP1 Nonsense_Mutation p.W3* 0.18 TCGA-FW-A3R5-06 9 122075631 122075631 C T BRINP1 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.38) TCGA-FW-A3R5-06 9 123163094 123163094 C T CDK5RAP2 Missense_Mutation p.A1793T 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-FW-A3R5-06 9 123215752 123215752 G A CDK5RAP2 Silent p.L925L 0.28 TCGA-FW-A3R5-06 9 123476144 123476144 G A MEGF9 Missense_Mutation p.P165S 0.36 tolerated(0.17) benign(0.001) TCGA-FW-A3R5-06 9 123550268 123550268 A C FBXW2 Missense_Mutation p.V90G 0.25 deleterious(0) possibly_damaging(0.898) TCGA-FW-A3R5-06 9 123667431 123667431 C T TRAF1 Missense_Mutation p.R373K 0.36 deleterious(0.04) benign(0.283) TCGA-FW-A3R5-06 9 123671621 123671621 G A TRAF1 Silent p.L307L 0.11 TCGA-FW-A3R5-06 9 123725021 123725021 G A C5 Missense_Mutation p.R1478W 0.06 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 9 123759877 123759877 G A C5 Missense_Mutation p.S913L 0.16 deleterious(0) benign(0.103) TCGA-FW-A3R5-06 9 123780052 123780052 G A C5 Missense_Mutation p.P529S 0.23 tolerated(0.12) benign(0.326) TCGA-FW-A3R5-06 9 123797160 123797160 A C C5 Missense_Mutation p.S169A 0.19 tolerated(0.52) benign(0.098) TCGA-FW-A3R5-06 9 123888069 123888069 C T CNTRL Missense_Mutation p.T627I 0.22 benign(0.258) TCGA-FW-A3R5-06 9 123929839 123929839 G A CNTRL Missense_Mutation p.E1910K 0.31 benign(0.008) TCGA-FW-A3R5-06 9 123932070 123932070 G A CNTRL Silent p.R2084R 0.28 TCGA-FW-A3R5-06 9 124080952 124080952 C T GSN Missense_Mutation p.L380F 0.25 tolerated(0.06) probably_damaging(0.979) TCGA-FW-A3R5-06 9 124519294 124519294 C T DAB2IP Missense_Mutation p.S94F 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 124528805 124528805 C T DAB2IP Missense_Mutation p.A470V 0.30 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 124528957 124528957 C T DAB2IP Missense_Mutation p.R521C 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 124752002 124752002 G A TTLL11 Silent p.I337I 0.20 TCGA-FW-A3R5-06 9 124929162 124929162 G A MORN5 Missense_Mutation p.D55N 0.10 tolerated(0.26) benign(0.035) TCGA-FW-A3R5-06 9 124962214 124962214 G A MORN5 3'UTR 0.24 TCGA-FW-A3R5-06 9 124979518 124979518 C T LHX6 Missense_Mutation p.D171N 0.43 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 125042722 125042722 C T MRRF Missense_Mutation p.A62V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 9 125140818 125140818 C T PTGS1 Silent p.F106F 0.21 TCGA-FW-A3R5-06 9 125141072 125141072 C T PTGS1 Missense_Mutation p.P124L 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-FW-A3R5-06 9 125148802 125148802 G A PTGS1 Missense_Mutation p.E363K 0.22 deleterious(0.02) possibly_damaging(0.777) TCGA-FW-A3R5-06 9 125148925 125148925 G A PTGS1 Missense_Mutation p.E404K 0.19 tolerated(0.79) benign(0.003) TCGA-FW-A3R5-06 9 125239244 125239244 C T OR1J1 Missense_Mutation p.G321E 0.28 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FW-A3R5-06 9 125239414 125239414 G A OR1J1 Silent p.S264S 0.31 TCGA-FW-A3R5-06 9 125240122 125240122 G A OR1J1 Silent p.F28F 0.33 TCGA-FW-A3R5-06 9 125273455 125273455 C T OR1J2 Silent p.A125A 0.19 TCGA-FW-A3R5-06 9 125281491 125281491 G A OR1J4 Silent p.Q24Q 0.18 TCGA-FW-A3R5-06 9 125281525 125281525 C T OR1J4 Silent p.L36L 0.16 TCGA-FW-A3R5-06 9 125282013 125282013 C T OR1J4 Silent p.V198V 0.35 TCGA-FW-A3R5-06 9 125282298 125282298 G A OR1J4 Silent p.R293R 0.30 TCGA-FW-A3R5-06 9 125288790 125288790 G A OR1N1 Silent p.P261P 0.14 TCGA-FW-A3R5-06 9 125288811 125288811 G A OR1N1 Silent p.F254F 0.38 TCGA-FW-A3R5-06 9 125289062 125289062 C T OR1N1 Missense_Mutation p.E171K 0.18 tolerated(0.84) probably_damaging(0.998) TCGA-FW-A3R5-06 9 125315672 125315672 C T OR1N2 Missense_Mutation p.P75L 0.12 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 9 125330004 125330004 G A OR1L8 Silent p.L251L 0.22 TCGA-FW-A3R5-06 9 125330444 125330444 G A OR1L8 Missense_Mutation p.L105F 0.35 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 9 125377471 125377471 C T OR1Q1 Missense_Mutation p.S152F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 125391169 125391169 G A OR1B1 Missense_Mutation p.P216S 0.11 deleterious(0.02) probably_damaging(1) TCGA-FW-A3R5-06 9 125424037 125424037 C T OR1L1 Missense_Mutation p.L15F 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-FW-A3R5-06 9 125424093 125424093 C T OR1L1 Silent p.P33P 0.11 TCGA-FW-A3R5-06 9 125424154 125424154 C T OR1L1 Missense_Mutation p.R54C 0.32 tolerated(0.06) benign(0.015) TCGA-FW-A3R5-06 9 125424692 125424692 G A OR1L1 Missense_Mutation p.G233E 0.31 deleterious(0) probably_damaging(0.992) TCGA-FW-A3R5-06 9 125424752 125424752 G A OR1L1 Missense_Mutation p.G253E 0.24 deleterious(0) probably_damaging(0.981) TCGA-FW-A3R5-06 9 125437455 125437455 G A OR1L3 Missense_Mutation p.G16E 0.24 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 125437581 125437581 C T OR1L3 Missense_Mutation p.P58L 0.19 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 9 125437994 125437994 G A OR1L3 Missense_Mutation p.E196K 0.23 tolerated(0.11) benign(0.17) TCGA-FW-A3R5-06 9 125486458 125486458 C T OR1L4 Missense_Mutation p.L64F 0.24 deleterious(0) possibly_damaging(0.739) TCGA-FW-A3R5-06 9 125486995 125486995 G A OR1L4 Missense_Mutation p.G243S 0.17 tolerated(0.11) benign(0.258) TCGA-FW-A3R5-06 9 125487019 125487019 C T OR1L4 Silent p.L251L 0.08 TCGA-FW-A3R5-06 9 125512489 125512489 C T OR1L6 Silent p.I121I 0.11 TCGA-FW-A3R5-06 9 125513025 125513025 G A OR1L6 Missense_Mutation p.R300K 0.31 tolerated(0.37) benign(0.002) TCGA-FW-A3R5-06 9 125562841 125562841 G A OR1K1 Missense_Mutation p.G147E 0.26 deleterious(0.01) benign(0.125) TCGA-FW-A3R5-06 9 125622214 125622214 G A RC3H2 Missense_Mutation p.P611S 0.13 tolerated(0.33) benign(0.057) TCGA-FW-A3R5-06 9 125680798 125680798 G A ZBTB26 3'UTR 0.31 TCGA-FW-A3R5-06 9 125797421 125797421 C T GPR21 Silent p.T192T 0.19 TCGA-FW-A3R5-06 9 126132444 126132444 G A CRB2 Missense_Mutation p.G371E 0.26 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 9 126132589 126132589 C T CRB2 Silent p.V419V 0.17 TCGA-FW-A3R5-06 9 126134603 126134603 G A CRB2 Missense_Mutation p.V862I 0.19 deleterious(0.04) benign(0.097) TCGA-FW-A3R5-06 9 126136884 126136884 G A CRB2 Missense_Mutation p.S1139N 0.08 tolerated(0.13) possibly_damaging(0.599) TCGA-FW-A3R5-06 9 126531810 126531810 G A DENND1A Silent p.F55F 0.27 TCGA-FW-A3R5-06 9 126777540 126777540 C T LHX2 Missense_Mutation p.H155Y 0.37 tolerated(0.42) benign(0.125) TCGA-FW-A3R5-06 9 126794844 126794844 C T LHX2 Missense_Mutation p.P360L 0.28 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 9 126794845 126794845 C T LHX2 Silent p.P360P 0.28 TCGA-FW-A3R5-06 9 126794954 126794954 C T LHX2 Missense_Mutation p.P397S 0.26 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 126794955 126794955 C T LHX2 Missense_Mutation p.P397L 0.26 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 9 126795046 126795046 C T LHX2 3'UTR 0.14 TCGA-FW-A3R5-06 9 127262788 127262788 C A NR5A1 Missense_Mutation p.G151C 0.46 tolerated(0.11) benign(0.195) TCGA-FW-A3R5-06 9 127262850 127262850 G A NR5A1 Missense_Mutation p.P130L 0.19 tolerated(0.34) benign(0.003) TCGA-FW-A3R5-06 9 127262851 127262851 G A NR5A1 Missense_Mutation p.P130S 0.19 tolerated(0.79) benign(0.008) TCGA-FW-A3R5-06 9 127300526 127300526 G A NR6A1 Silent p.Y223Y 0.27 TCGA-FW-A3R5-06 9 127302413 127302413 C T NR6A1 Silent p.E165E 0.16 TCGA-FW-A3R5-06 9 127549481 127549481 G A OLFML2A Missense_Mutation p.M106I 0.30 deleterious(0.02) benign(0.432) TCGA-FW-A3R5-06 9 127561577 127561577 A G OLFML2A Missense_Mutation p.N159S 0.21 deleterious(0.02) probably_damaging(0.97) TCGA-FW-A3R5-06 9 127570141 127570141 C T OLFML2A Missense_Mutation p.A417V 0.32 deleterious(0) possibly_damaging(0.787) TCGA-FW-A3R5-06 9 127990228 127990228 C T RABEPK Missense_Mutation p.P189L 0.29 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 9 127998957 127998957 C T HSPA5 Missense_Mutation p.V627I 0.23 tolerated_low_confidence(0.16) benign(0.084) TCGA-FW-A3R5-06 9 128201069 128201069 C A MAPKAP1 3'UTR 0.25 TCGA-FW-A3R5-06 9 12821859 12821859 C T LURAP1L 3'UTR 0.23 TCGA-FW-A3R5-06 9 129143376 129143376 C T MVB12B Missense_Mutation p.L80F 0.37 tolerated(0.58) probably_damaging(0.969) TCGA-FW-A3R5-06 9 129458122 129458122 C T LMX1B Silent p.V308V 0.27 TCGA-FW-A3R5-06 9 129458753 129458753 C T LMX1B 3'UTR 0.15 TCGA-FW-A3R5-06 9 129641745 129641745 C T ZBTB34 Silent p.L19L 0.23 TCGA-FW-A3R5-06 9 129642196 129642196 C T ZBTB34 Missense_Mutation p.S169F 0.40 tolerated(0.06) possibly_damaging(0.466) TCGA-FW-A3R5-06 9 129853969 129853969 C T ANGPTL2 Missense_Mutation p.R421K 0.24 tolerated(0.07) probably_damaging(0.992) TCGA-FW-A3R5-06 9 130167124 130167124 C T SLC2A8 Missense_Mutation p.A335V 0.17 tolerated(0.4) benign(0.088) TCGA-FW-A3R5-06 9 130286073 130286073 G A FAM129B Silent p.F158F 0.17 TCGA-FW-A3R5-06 9 130473762 130473762 G A C9orf117 Missense_Mutation p.R281K 0.17 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 9 130479928 130479928 G A TTC16 Silent p.R101R 0.38 TCGA-FW-A3R5-06 9 130488626 130488626 T G TTC16 Missense_Mutation p.I456M 0.09 tolerated(0.09) benign(0.091) TCGA-FW-A3R5-06 9 130492962 130492962 G A TTC16 Missense_Mutation p.E634K 0.16 deleterious(0.03) benign(0.293) TCGA-FW-A3R5-06 9 130501159 130501159 C T SH2D3C Missense_Mutation p.E817K 0.31 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 130501160 130501160 C T SH2D3C Silent p.T816T 0.29 TCGA-FW-A3R5-06 9 130504133 130504133 C T SH2D3C Silent p.E674E 0.38 TCGA-FW-A3R5-06 9 130507048 130507048 C T SH2D3C Missense_Mutation p.G532E 0.11 deleterious(0.05) possibly_damaging(0.764) TCGA-FW-A3R5-06 9 130509442 130509442 G A SH2D3C Silent p.S416S 0.15 TCGA-FW-A3R5-06 9 130509543 130509543 G A SH2D3C Silent p.L383L 0.24 TCGA-FW-A3R5-06 9 130511741 130511741 G A SH2D3C Silent p.L296L 0.10 TCGA-FW-A3R5-06 9 130550648 130550648 C T CDK9 Silent p.P196P 0.24 TCGA-FW-A3R5-06 9 130569509 130569509 C T FPGS Missense_Mutation p.P175S 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-FW-A3R5-06 9 130630269 130630269 G A AK1 3'UTR 0.26 TCGA-FW-A3R5-06 9 130630338 130630338 G A AK1 Silent p.S178S 0.34 TCGA-FW-A3R5-06 9 130630339 130630339 G A AK1 Missense_Mutation p.S178F 0.34 deleterious(0.01) possibly_damaging(0.464) TCGA-FW-A3R5-06 9 130670630 130670630 G A ST6GALNAC4 3'UTR 0.20 TCGA-FW-A3R5-06 9 130674663 130674663 G A ST6GALNAC4 Silent p.T165T 0.26 TCGA-FW-A3R5-06 9 130742417 130742417 G A FAM102A 5'UTR 0.17 TCGA-FW-A3R5-06 9 130825767 130825767 G A NAIF1 Silent p.A308A 0.23 TCGA-FW-A3R5-06 9 130911754 130911754 C T LCN2 Intron 0.18 TCGA-FW-A3R5-06 9 130911789 130911789 C T LCN2 5'UTR 0.23 TCGA-FW-A3R5-06 9 130952661 130952661 G A CIZ1 Missense_Mutation p.S78F 0.25 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 130982538 130982538 G A DNM1 Missense_Mutation p.R256Q 0.36 tolerated(0.16) benign(0.229) TCGA-FW-A3R5-06 9 130984529 130984529 G A DNM1 Silent p.Q301Q 0.22 TCGA-FW-A3R5-06 9 130984581 130984581 C T DNM1 Missense_Mutation p.P319S 0.40 deleterious(0.04) benign(0.3) TCGA-FW-A3R5-06 9 131009728 131009728 C T DNM1 Missense_Mutation p.S619F 0.21 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 131021480 131021480 G A GOLGA2 Missense_Mutation p.A661V 0.27 tolerated(0.72) benign(0.026) TCGA-FW-A3R5-06 9 131038524 131038524 C T SWI5 Missense_Mutation p.P34S 0.41 tolerated_low_confidence(0.54) benign(0.005) TCGA-FW-A3R5-06 9 13107074 13107074 C T MPDZ Missense_Mutation p.D2006N 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 131107735 131107735 C T SLC27A4 Missense_Mutation p.L155F 0.18 deleterious(0.05) probably_damaging(1) TCGA-FW-A3R5-06 9 131117932 131117932 C T SLC27A4 Missense_Mutation p.T544I 0.20 tolerated(0.18) benign(0.005) TCGA-FW-A3R5-06 9 131118023 131118023 C T SLC27A4 Silent p.P574P 0.22 TCGA-FW-A3R5-06 9 13112081 13112081 G A MPDZ Missense_Mutation p.P1860L 0.36 deleterious(0) probably_damaging(0.972) TCGA-FW-A3R5-06 9 131140306 131140306 C T URM1 Intron 0.26 TCGA-FW-A3R5-06 9 131151740 131151740 C T URM1 Missense_Mutation p.P130L 0.58 tolerated_low_confidence(1) benign(0) TCGA-FW-A3R5-06 9 131247127 131247127 G A ODF2 Missense_Mutation p.E418K 0.18 deleterious(0.03) benign(0.343) TCGA-FW-A3R5-06 9 13125237 13125237 G A MPDZ Silent p.S1595S 0.32 TCGA-FW-A3R5-06 9 131339657 131339657 C T SPTAN1 Silent p.D319D 0.31 TCGA-FW-A3R5-06 9 131375669 131375669 C T SPTAN1 Silent p.L1685L 0.23 TCGA-FW-A3R5-06 9 131455961 131455961 G A SET Silent p.R192R 0.09 TCGA-FW-A3R5-06 9 131456259 131456259 G A SET Missense_Mutation p.E263K 0.25 tolerated(0.06) unknown(0) TCGA-FW-A3R5-06 9 131476552 131476552 C T PKN3 Silent p.P463P 0.27 TCGA-FW-A3R5-06 9 13150667 13150667 G A MPDZ Missense_Mutation p.P1158L 0.31 deleterious(0) possibly_damaging(0.904) TCGA-FW-A3R5-06 9 131515789 131515789 A G ZER1 Silent p.L134L 0.14 TCGA-FW-A3R5-06 9 131559401 131559401 C T TBC1D13 Missense_Mutation p.P151S 0.21 tolerated(0.39) benign(0.008) TCGA-FW-A3R5-06 9 131570182 131570182 C T TBC1D13 3'UTR 0.42 TCGA-FW-A3R5-06 9 131607688 131607688 G A CCBL1 Intron 0.24 TCGA-FW-A3R5-06 9 131670757 131670757 C T LRRC8A Silent p.I438I 0.23 TCGA-FW-A3R5-06 9 131702715 131702715 C T PHYHD1 Missense_Mutation p.S168L 0.24 tolerated(0.15) benign(0.005) TCGA-FW-A3R5-06 9 131708608 131708608 G A DOLK Silent p.S325S 0.29 TCGA-FW-A3R5-06 9 131733085 131733085 C T NUP188 Missense_Mutation p.P321S 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 131744851 131744851 C T NUP188 Missense_Mutation p.P514S 0.24 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 9 131750420 131750420 C T NUP188 Missense_Mutation p.P830S 0.22 deleterious(0.03) benign(0.414) TCGA-FW-A3R5-06 9 131802909 131802909 C T FAM73B Silent p.I12I 0.22 TCGA-FW-A3R5-06 9 131804628 131804628 C T FAM73B Missense_Mutation p.L48F 0.24 tolerated(0.4) probably_damaging(1) TCGA-FW-A3R5-06 9 13183510 13183510 G A MPDZ Silent p.I852I 0.15 TCGA-FW-A3R5-06 9 131847378 131847378 C T DOLPP1 Missense_Mutation p.P85L 0.13 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 131939645 131939645 G A IER5L Silent p.P229P 0.36 TCGA-FW-A3R5-06 9 132483027 132483027 C T PRRX2 Silent p.L200L 0.23 TCGA-FW-A3R5-06 9 132510954 132510954 G A PTGES Silent p.P63P 0.15 TCGA-FW-A3R5-06 9 132623221 132623221 C T USP20 Silent p.S112S 0.34 TCGA-FW-A3R5-06 9 132985378 132985378 C T NCS1 Silent p.L138L 0.21 TCGA-FW-A3R5-06 9 133333958 133333958 C T ASS1 Silent p.S115S 0.17 TCGA-FW-A3R5-06 9 133339513 133339513 C T ASS1 Missense_Mutation p.R127W 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 133488412 133488412 C T FUBP3 Missense_Mutation p.S115L 0.34 deleterious(0.01) benign(0.256) TCGA-FW-A3R5-06 9 133507337 133507337 C T FUBP3 Missense_Mutation p.P454L 0.25 tolerated(0.13) benign(0.016) TCGA-FW-A3R5-06 9 133540058 133540058 C T PRDM12 Silent p.L6L 0.42 TCGA-FW-A3R5-06 9 133576301 133576301 G A EXOSC2 Silent p.T158T 0.30 TCGA-FW-A3R5-06 9 133748382 133748382 C T ABL1 Missense_Mutation p.S367L 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 133760622 133760622 C T ABL1 Missense_Mutation p.P1001L 0.12 deleterious_low_confidence(0.01) benign(0.328) TCGA-FW-A3R5-06 9 133768912 133768912 C T QRFP Missense_Mutation p.G105E 0.25 tolerated(0.12) probably_damaging(0.943) TCGA-FW-A3R5-06 9 133779647 133779647 G A FIBCD1 Missense_Mutation p.S397L 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-FW-A3R5-06 9 133787240 133787240 G A FIBCD1 Silent p.F295F 0.36 TCGA-FW-A3R5-06 9 133799148 133799148 C T FIBCD1 Missense_Mutation p.D278N 0.22 deleterious(0.02) possibly_damaging(0.884) TCGA-FW-A3R5-06 9 133799149 133799149 C T FIBCD1 Silent p.T277T 0.21 TCGA-FW-A3R5-06 9 133805017 133805017 C T FIBCD1 Silent p.K163K 0.16 TCGA-FW-A3R5-06 9 133805038 133805038 C T FIBCD1 Silent p.T156T 0.28 TCGA-FW-A3R5-06 9 133911710 133911710 G A LAMC3 Missense_Mutation p.E323K 0.25 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 133942568 133942568 C T LAMC3 Missense_Mutation p.P857S 0.48 tolerated(0.15) benign(0.015) TCGA-FW-A3R5-06 9 134049606 134049606 C T NUP214 Missense_Mutation p.R1020C 0.40 probably_damaging(0.968) TCGA-FW-A3R5-06 9 134497252 134497252 G A RAPGEF1 Silent p.S613S 0.29 TCGA-FW-A3R5-06 9 134497253 134497253 G A RAPGEF1 Missense_Mutation p.S613F 0.29 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A3R5-06 9 135042402 135042402 G A NTNG2 Missense_Mutation p.G62R 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 135073590 135073590 C T NTNG2 Silent p.L151L 0.26 TCGA-FW-A3R5-06 9 135140051 135140051 G A SETX Nonsense_Mutation p.Q2537* 0.11 TCGA-FW-A3R5-06 9 135203728 135203728 G A SETX Missense_Mutation p.S1086L 0.11 deleterious(0.04) benign(0.013) TCGA-FW-A3R5-06 9 135205499 135205499 G A SETX Missense_Mutation p.P496S 0.17 deleterious(0.04) probably_damaging(1) TCGA-FW-A3R5-06 9 135206752 135206752 G T SETX Missense_Mutation p.L308I 0.20 tolerated(0.07) possibly_damaging(0.808) TCGA-FW-A3R5-06 9 135266134 135266134 G A TTF1 Missense_Mutation p.P691L 0.13 tolerated(0.27) benign(0.008) TCGA-FW-A3R5-06 9 135413078 135413078 G A C9orf171 Silent p.L241L 0.27 TCGA-FW-A3R5-06 9 135447811 135447811 G A C9orf171 Missense_Mutation p.D293N 0.37 tolerated(0.51) benign(0.019) TCGA-FW-A3R5-06 9 135447862 135447862 G A C9orf171 Missense_Mutation p.G310R 0.26 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 135447863 135447863 G A C9orf171 Missense_Mutation p.G310E 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 135462841 135462841 G A BARHL1 Missense_Mutation p.E198K 0.18 tolerated(0.05) possibly_damaging(0.669) TCGA-FW-A3R5-06 9 135487526 135487526 G A DDX31 Missense_Mutation p.P753S 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 135487632 135487632 G A DDX31 Silent p.S717S 0.14 TCGA-FW-A3R5-06 9 135554173 135554173 C T GTF3C4 Silent p.S389S 0.32 TCGA-FW-A3R5-06 9 135554246 135554246 C T GTF3C4 Missense_Mutation p.H414Y 0.28 deleterious(0.02) probably_damaging(0.968) TCGA-FW-A3R5-06 9 135554457 135554457 C T GTF3C4 Missense_Mutation p.P484L 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-FW-A3R5-06 9 135690087 135690087 G A AK8 Missense_Mutation p.A306V 0.23 tolerated(0.26) possibly_damaging(0.825) TCGA-FW-A3R5-06 9 135698623 135698623 G A AK8 Silent p.A286A 0.36 TCGA-FW-A3R5-06 9 135759459 135759459 C G C9orf9 Missense_Mutation p.P42R 0.11 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 9 135759460 135759460 C T C9orf9 Silent p.P42P 0.11 TCGA-FW-A3R5-06 9 135781419 135781419 G A TSC1 Nonsense_Mutation p.Q516* 0.25 TCGA-FW-A3R5-06 9 135862086 135862086 G A GFI1B Silent p.V7V 0.24 TCGA-FW-A3R5-06 9 135866329 135866329 C T GFI1B Silent p.S295S 0.19 TCGA-FW-A3R5-06 9 135919191 135919191 C T GTF3C5 Silent p.L150L 0.10 TCGA-FW-A3R5-06 9 135944533 135944533 G A CEL Nonsense_Mutation p.W394* 0.15 TCGA-FW-A3R5-06 9 135975712 135975712 G A RALGDS Silent p.L838L 0.38 TCGA-FW-A3R5-06 9 136030652 136030652 G A GBGT1 Missense_Mutation p.S91F 0.28 deleterious(0.02) benign(0.068) TCGA-FW-A3R5-06 9 136083927 136083927 C T OBP2B Silent p.R45R 0.39 TCGA-FW-A3R5-06 9 136083936 136083936 C T OBP2B Silent p.E42E 0.34 TCGA-FW-A3R5-06 9 136131040 136131040 C T RP11-430N14.4 5'Flank 0.36 TCGA-FW-A3R5-06 9 136131706 136131706 C T RP11-430N14.4 5'Flank 0.25 TCGA-FW-A3R5-06 9 136268834 136268834 G A C9orf96 Silent p.V495V 0.29 TCGA-FW-A3R5-06 9 136320418 136320418 C T ADAMTS13 Silent p.S1087S 0.10 TCGA-FW-A3R5-06 9 136320692 136320692 C T ADAMTS13 Silent p.L1179L 0.25 TCGA-FW-A3R5-06 9 136380695 136380695 G A TMEM8C Missense_Mutation p.P145L 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 136401900 136401900 G A ADAMTSL2 Silent p.G22G 0.20 TCGA-FW-A3R5-06 9 136523646 136523646 G A DBH 3'UTR 0.62 TCGA-FW-A3R5-06 9 136529031 136529031 T A SARDH Missense_Mutation p.R913W 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 136536720 136536720 C T SARDH Missense_Mutation p.G755S 0.21 deleterious(0.05) probably_damaging(0.981) TCGA-FW-A3R5-06 9 136536721 136536721 C T SARDH Silent p.A754A 0.21 TCGA-FW-A3R5-06 9 136584084 136584084 C T SARDH Silent p.E332E 0.34 TCGA-FW-A3R5-06 9 136597593 136597593 G A SARDH Silent p.F154F 0.34 TCGA-FW-A3R5-06 9 136597649 136597649 C T SARDH Missense_Mutation p.E136K 0.18 tolerated(0.26) benign(0.102) TCGA-FW-A3R5-06 9 136635505 136635505 G A VAV2 Missense_Mutation p.S781F 0.21 tolerated(0.08) possibly_damaging(0.775) TCGA-FW-A3R5-06 9 136661588 136661588 G A VAV2 Missense_Mutation p.P332L 0.18 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 136661589 136661589 G A VAV2 Missense_Mutation p.P332S 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-FW-A3R5-06 9 137007496 137007496 C T WDR5 Silent p.V132V 0.29 TCGA-FW-A3R5-06 9 137593095 137593095 C T COL5A1 Silent p.F190F 0.19 TCGA-FW-A3R5-06 9 137593140 137593140 C T COL5A1 Silent p.I205I 0.10 TCGA-FW-A3R5-06 9 137623485 137623485 G A COL5A1 Silent p.A436A 0.14 TCGA-FW-A3R5-06 9 137642657 137642657 G A COL5A1 Missense_Mutation p.D531N 0.18 probably_damaging(0.993) TCGA-FW-A3R5-06 9 137655578 137655578 G A COL5A1 Missense_Mutation p.E677K 0.11 probably_damaging(0.931) TCGA-FW-A3R5-06 9 137658856 137658856 G A COL5A1 Missense_Mutation p.G715E 0.19 unknown(0) TCGA-FW-A3R5-06 9 137681046 137681046 G A COL5A1 Missense_Mutation p.G898S 0.38 unknown(0) TCGA-FW-A3R5-06 9 137702101 137702101 G A COL5A1 Missense_Mutation p.G1159R 0.22 unknown(0) TCGA-FW-A3R5-06 9 137707461 137707461 G A COL5A1 Missense_Mutation p.E1352K 0.17 unknown(0) TCGA-FW-A3R5-06 9 137712030 137712030 C T COL5A1 Silent p.L1505L 0.23 TCGA-FW-A3R5-06 9 137716508 137716508 C T COL5A1 Silent p.I1587I 0.21 TCGA-FW-A3R5-06 9 137726994 137726994 G A COL5A1 Missense_Mutation p.E1772K 0.25 unknown(0) TCGA-FW-A3R5-06 9 137777102 137777102 G A FCN2 Missense_Mutation p.D107N 0.25 deleterious(0.02) possibly_damaging(0.54) TCGA-FW-A3R5-06 9 137777709 137777709 G A FCN2 Silent p.L175L 0.30 TCGA-FW-A3R5-06 9 137809704 137809704 C T FCN1 Missense_Mutation p.G5E 0.23 tolerated_low_confidence(0.92) benign(0.002) TCGA-FW-A3R5-06 9 138011385 138011385 C T OLFM1 Silent p.F255F 0.30 TCGA-FW-A3R5-06 9 138011723 138011723 C T OLFM1 Missense_Mutation p.S368F 0.30 deleterious(0) benign(0.117) TCGA-FW-A3R5-06 9 138376346 138376346 C T PPP1R26 5'UTR 0.23 TCGA-FW-A3R5-06 9 138415806 138415806 G A LCN1 Missense_Mutation p.G125R 0.20 tolerated(0.31) benign(0.028) TCGA-FW-A3R5-06 9 138415807 138415807 G A LCN1 Missense_Mutation p.G125E 0.20 tolerated(0.08) benign(0.062) TCGA-FW-A3R5-06 9 138438674 138438674 G A OBP2A Silent p.P41P 0.26 TCGA-FW-A3R5-06 9 138440520 138440527 CCCACCTT TCCACGCC OBP2A Intron 0.15 TCGA-FW-A3R5-06 9 138454150 138454150 C T PAEP Missense_Mutation p.T36I 0.10 tolerated(0.07) probably_damaging(0.986) TCGA-FW-A3R5-06 9 138516120 138516120 G A GLT6D1 Silent p.I218I 0.15 TCGA-FW-A3R5-06 9 138518016 138518016 G A GLT6D1 Silent p.L52L 0.18 TCGA-FW-A3R5-06 9 138556088 138556088 C T LCN9 Silent p.F59F 0.19 TCGA-FW-A3R5-06 9 138557709 138557709 C T LCN9 Missense_Mutation p.P160S 0.25 tolerated(0.44) benign(0.062) TCGA-FW-A3R5-06 9 138586200 138586200 G A SOHLH1 Intron 0.25 TCGA-FW-A3R5-06 9 138587048 138587048 G A SOHLH1 Silent p.P241P 0.24 TCGA-FW-A3R5-06 9 138651571 138651571 C T KCNT1 Missense_Mutation p.L301F 0.22 tolerated(0.07) benign(0.327) TCGA-FW-A3R5-06 9 138657008 138657008 C T KCNT1 Silent p.F389F 0.34 TCGA-FW-A3R5-06 9 138683650 138683650 G A KCNT1 Missense_Mutation p.M1170I 0.22 tolerated(0.09) benign(0.022) TCGA-FW-A3R5-06 9 138713209 138713209 G A CAMSAP1 Missense_Mutation p.R1100C 0.28 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 9 138713428 138713428 G A CAMSAP1 Missense_Mutation p.L1027F 0.35 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 9 138903368 138903368 G A NACC2 Silent p.T586T 0.39 TCGA-FW-A3R5-06 9 139089520 139089520 G A LHX3 Missense_Mutation p.A287V 0.21 tolerated(0.25) benign(0.002) TCGA-FW-A3R5-06 9 139089576 139089576 C T LHX3 Silent p.L268L 0.25 TCGA-FW-A3R5-06 9 139113660 139113660 G A QSOX2 Missense_Mutation p.S268L 0.33 deleterious(0.02) benign(0.051) TCGA-FW-A3R5-06 9 139113755 139113755 G A QSOX2 Silent p.I236I 0.26 TCGA-FW-A3R5-06 9 139261721 139261721 G A CARD9 Intron 0.13 TCGA-FW-A3R5-06 9 139264207 139264207 C T CARD9 Missense_Mutation p.D358N 0.44 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 139264822 139264822 C T CARD9 Missense_Mutation p.R292Q 0.62 tolerated(0.19) benign(0.003) TCGA-FW-A3R5-06 9 139274303 139274303 G A SNAPC4 Missense_Mutation p.A838V 0.25 tolerated(0.11) benign(0.046) TCGA-FW-A3R5-06 9 139313499 139313499 C T PMPCA Nonsense_Mutation p.R402* 0.15 TCGA-FW-A3R5-06 9 139390781 139390781 G A NOTCH1 Silent p.S2470S 0.38 TCGA-FW-A3R5-06 9 139571924 139571924 G A AGPAT2 Silent p.A89A 0.26 TCGA-FW-A3R5-06 9 139641983 139641983 G A LCN6 Silent p.A41A 0.23 TCGA-FW-A3R5-06 9 139650836 139650836 G A LCN8 Intron 0.25 TCGA-FW-A3R5-06 9 139815662 139815662 C T TRAF2 Missense_Mutation p.S378F 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 139815663 139815663 C T TRAF2 Silent p.S378S 0.27 TCGA-FW-A3R5-06 9 139847361 139847361 C T LCN12 Silent p.F44F 0.32 TCGA-FW-A3R5-06 9 139873732 139873732 C T PTGDS Silent p.S104S 0.27 TCGA-FW-A3R5-06 9 139873743 139873743 G A PTGDS Missense_Mutation p.R108Q 0.27 tolerated(0.46) benign(0.003) TCGA-FW-A3R5-06 9 139873744 139873744 G A PTGDS Silent p.R108R 0.27 TCGA-FW-A3R5-06 9 139874654 139874654 G A PTGDS Silent p.R156R 0.25 TCGA-FW-A3R5-06 9 139905714 139905714 G A ABCA2 Silent p.F1949F 0.11 TCGA-FW-A3R5-06 9 139907193 139907193 G A ABCA2 Silent p.L1684L 0.23 TCGA-FW-A3R5-06 9 139907985 139907985 G A ABCA2 Missense_Mutation p.S1493F 0.22 deleterious(0.04) probably_damaging(0.995) TCGA-FW-A3R5-06 9 139909534 139909534 G A ABCA2 Missense_Mutation p.S1238F 0.35 deleterious(0.02) possibly_damaging(0.622) TCGA-FW-A3R5-06 9 139927480 139927480 C T C9orf139 5'UTR 0.34 TCGA-FW-A3R5-06 9 139929438 139929438 G A C9orf139 Missense_Mutation p.G169R 0.10 tolerated_low_confidence(0.2) unknown(0) TCGA-FW-A3R5-06 9 139944953 139944953 G A ENTPD2 Missense_Mutation p.S271F 0.30 deleterious(0.02) benign(0.032) TCGA-FW-A3R5-06 9 139944958 139944958 G A ENTPD2 Silent p.G269G 0.29 TCGA-FW-A3R5-06 9 139945765 139945765 G T ENTPD2 Silent p.T148T 0.28 TCGA-FW-A3R5-06 9 139946772 139946781 GAAGAACCAG - ENTPD2 Frame_Shift_Del p.A46Dfs*82 0.20 TCGA-FW-A3R5-06 9 139960772 139960772 G A SAPCD2 Missense_Mutation p.P209L 0.15 tolerated(0.43) benign(0.009) TCGA-FW-A3R5-06 9 139983393 139983393 C T MAN1B1 Missense_Mutation p.P134L 0.25 tolerated(0.2) benign(0.206) TCGA-FW-A3R5-06 9 140006426 140006426 G A DPP7 Missense_Mutation p.P369L 0.12 deleterious(0) probably_damaging(0.966) TCGA-FW-A3R5-06 9 140043562 140043562 G A GRIN1 Splice_Site p.X245_splice 0.41 TCGA-FW-A3R5-06 9 140055526 140055526 G A GRIN1 Missense_Mutation p.E427K 0.22 tolerated(0.78) benign(0.018) TCGA-FW-A3R5-06 9 140099732 140099732 G A TMEM203 Silent p.S45S 0.15 TCGA-FW-A3R5-06 9 140109069 140109069 C T NDOR1 Missense_Mutation p.A257V 0.21 deleterious(0.03) benign(0.062) TCGA-FW-A3R5-06 9 140146307 140146307 G A C9orf173 Silent p.Q76Q 0.31 TCGA-FW-A3R5-06 9 140151279 140151279 C T NELFB Missense_Mutation p.P124S 0.50 deleterious(0.05) probably_damaging(0.986) TCGA-FW-A3R5-06 9 140267448 140267448 G A EXD3 Missense_Mutation p.P124L 0.15 deleterious(0.05) benign(0.094) TCGA-FW-A3R5-06 9 140331432 140331432 C T ENTPD8 Silent p.Q148Q 0.14 TCGA-FW-A3R5-06 9 140344095 140344095 G A NSMF Missense_Mutation p.P484L 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 140347008 140347008 G A NSMF Missense_Mutation p.L388F 0.16 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 140356050 140356050 G A PNPLA7 Missense_Mutation p.S1260F 0.16 deleterious(0.02) probably_damaging(0.955) TCGA-FW-A3R5-06 9 140396114 140396114 C T PNPLA7 Silent p.R513R 0.12 TCGA-FW-A3R5-06 9 140414484 140414484 G A PNPLA7 Silent p.A323A 0.31 TCGA-FW-A3R5-06 9 140416159 140416159 C T PNPLA7 Missense_Mutation p.V296M 0.23 deleterious(0) possibly_damaging(0.879) TCGA-FW-A3R5-06 9 140438247 140438247 G A PNPLA7 Silent p.T98T 0.36 TCGA-FW-A3R5-06 9 140777335 140777335 G A CACNA1B Missense_Mutation p.G177E 0.15 deleterious(0) possibly_damaging(0.667) TCGA-FW-A3R5-06 9 140846790 140846790 C T CACNA1B Missense_Mutation p.S344F 0.11 deleterious(0) possibly_damaging(0.486) TCGA-FW-A3R5-06 9 140901246 140901246 G A CACNA1B Missense_Mutation p.V668M 0.09 deleterious(0.03) possibly_damaging(0.486) TCGA-FW-A3R5-06 9 140907670 140907670 G A CACNA1B Silent p.A750A 0.22 TCGA-FW-A3R5-06 9 140938301 140938301 C T CACNA1B Missense_Mutation p.P1121L 0.32 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 9 140952615 140952615 C T CACNA1B Silent p.F1407F 0.29 TCGA-FW-A3R5-06 9 140953566 140953566 G A CACNA1B Silent p.L1503L 0.24 TCGA-FW-A3R5-06 9 140953626 140953626 C T CACNA1B Silent p.I1523I 0.24 TCGA-FW-A3R5-06 9 140953629 140953629 C T CACNA1B Silent p.A1524A 0.25 TCGA-FW-A3R5-06 9 140991028 140991028 C T CACNA1B Silent p.F1729F 0.28 TCGA-FW-A3R5-06 9 141006949 141006949 C T CACNA1B Missense_Mutation p.P1843L 0.33 tolerated(0.3) probably_damaging(0.999) TCGA-FW-A3R5-06 9 141010029 141010029 C T CACNA1B Missense_Mutation p.P1892L 0.23 tolerated(0.07) possibly_damaging(0.87) TCGA-FW-A3R5-06 9 141012408 141012408 G A CACNA1B Missense_Mutation p.E1930K 0.12 deleterious(0.03) benign(0.358) TCGA-FW-A3R5-06 9 141070233 141070233 G A TUBBP5 Intron 0.21 TCGA-FW-A3R5-06 9 14722227 14722227 G A CER1 Silent p.V148V 0.10 TCGA-FW-A3R5-06 9 14747004 14747004 C T FREM1 Missense_Mutation p.G2019R 0.21 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 9 14747289 14747289 G A FREM1 Silent p.S1994S 0.23 TCGA-FW-A3R5-06 9 14748569 14748569 G A FREM1 Silent p.L1876L 0.24 TCGA-FW-A3R5-06 9 14756399 14756399 G A FREM1 Missense_Mutation p.P1794S 0.31 tolerated(0.34) benign(0.016) TCGA-FW-A3R5-06 9 14769773 14769773 G A FREM1 Missense_Mutation p.T1718I 0.50 tolerated(0.29) benign(0.001) TCGA-FW-A3R5-06 9 14775943 14775943 G A FREM1 Silent p.F1567F 0.09 TCGA-FW-A3R5-06 9 14801670 14801670 G A FREM1 Missense_Mutation p.S1225F 0.31 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3R5-06 9 14806731 14806731 G A FREM1 Missense_Mutation p.P1068S 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 14812856 14812856 G A FREM1 Silent p.F949F 0.12 TCGA-FW-A3R5-06 9 14812906 14812906 C T FREM1 Missense_Mutation p.E933K 0.34 tolerated(0.46) benign(0.002) TCGA-FW-A3R5-06 9 14819258 14819258 C T FREM1 Nonsense_Mutation p.W840* 0.35 TCGA-FW-A3R5-06 9 14819293 14819293 C T FREM1 Missense_Mutation p.G829R 0.13 deleterious(0) possibly_damaging(0.84) TCGA-FW-A3R5-06 9 14823176 14823176 C T FREM1 Silent p.V773V 0.11 TCGA-FW-A3R5-06 9 14841576 14841576 G A FREM1 Missense_Mutation p.H584Y 0.35 deleterious(0.03) benign(0.004) TCGA-FW-A3R5-06 9 14857646 14857646 G A FREM1 Missense_Mutation p.L245F 0.34 deleterious(0.03) benign(0.234) TCGA-FW-A3R5-06 9 14857684 14857684 C T FREM1 Missense_Mutation p.S232N 0.13 tolerated(0.32) benign(0.008) TCGA-FW-A3R5-06 9 14859437 14859437 G A FREM1 Silent p.V125V 0.34 TCGA-FW-A3R5-06 9 14868871 14868871 C T FREM1 Missense_Mutation p.M35I 0.42 tolerated(0.18) benign(0.004) TCGA-FW-A3R5-06 9 15185362 15185362 G A TTC39B Silent p.I510I 0.31 TCGA-FW-A3R5-06 9 15203859 15203859 C T TTC39B Missense_Mutation p.E241K 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 17332635 17332635 C T CNTLN Silent p.S517S 0.34 TCGA-FW-A3R5-06 9 17787380 17787380 C T SH3GL2 Missense_Mutation p.P112S 0.08 tolerated(0.73) benign(0.008) TCGA-FW-A3R5-06 9 17789545 17789545 G A SH3GL2 Missense_Mutation p.M207I 0.12 deleterious(0) benign(0.29) TCGA-FW-A3R5-06 9 18657708 18657708 G A ADAMTSL1 Silent p.R302R 0.15 TCGA-FW-A3R5-06 9 18657714 18657714 G A ADAMTSL1 Silent p.T304T 0.17 TCGA-FW-A3R5-06 9 18753417 18753417 G A ADAMTSL1 Missense_Mutation p.E710K 0.38 tolerated(0.09) benign(0.201) TCGA-FW-A3R5-06 9 18753478 18753478 C T ADAMTSL1 Missense_Mutation p.P730L 0.26 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 9 18770674 18770674 C T ADAMTSL1 Silent p.F764F 0.19 TCGA-FW-A3R5-06 9 18770762 18770762 C T ADAMTSL1 Missense_Mutation p.L794F 0.44 tolerated(0.12) probably_damaging(0.936) TCGA-FW-A3R5-06 9 18776967 18776967 G A ADAMTSL1 Missense_Mutation p.D914N 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-FW-A3R5-06 9 18777014 18777014 C T ADAMTSL1 Silent p.F929F 0.27 TCGA-FW-A3R5-06 9 18777046 18777046 C T ADAMTSL1 Missense_Mutation p.S940L 0.11 tolerated(0.12) possibly_damaging(0.871) TCGA-FW-A3R5-06 9 18829902 18829902 G A ADAMTSL1 Silent p.P1392P 0.29 TCGA-FW-A3R5-06 9 18889628 18889628 C T ADAMTSL1 Nonsense_Mutation p.Q1509* 0.13 TCGA-FW-A3R5-06 9 18892399 18892399 C T ADAMTSL1 Silent p.T1552T 0.38 TCGA-FW-A3R5-06 9 18927978 18927978 T C FAM154A 3'UTR 0.35 TCGA-FW-A3R5-06 9 19350783 19350783 C T DENND4C Silent p.I1418I 0.16 TCGA-FW-A3R5-06 9 19516253 19516253 C T SLC24A2 Missense_Mutation p.M628I 0.42 deleterious(0) probably_damaging(0.984) TCGA-FW-A3R5-06 9 19576956 19576956 C T SLC24A2 Silent p.E398E 0.42 TCGA-FW-A3R5-06 9 19786502 19786502 C T SLC24A2 Silent p.P121P 0.09 TCGA-FW-A3R5-06 9 20414089 20414089 G A MLLT3 Missense_Mutation p.A252V 0.33 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 9 20716129 20716129 C T FOCAD Intron 0.10 TCGA-FW-A3R5-06 9 2096748 2096748 C T SMARCA2 Missense_Mutation p.S992F 0.12 possibly_damaging(0.788) TCGA-FW-A3R5-06 9 20976437 20976437 C T FOCAD Missense_Mutation p.P1384L 0.09 deleterious(0) possibly_damaging(0.486) TCGA-FW-A3R5-06 9 2110321 2110321 C T SMARCA2 Silent p.F1120F 0.30 TCGA-FW-A3R5-06 9 21141378 21141378 C T IFNW1 Silent p.E64E 0.39 TCGA-FW-A3R5-06 9 21166096 21166096 C T IFNA21 Missense_Mutation p.M172I 0.09 tolerated(0.09) benign(0.025) TCGA-FW-A3R5-06 9 21166595 21166595 G A IFNA21 Missense_Mutation p.S6F 0.27 deleterious(0.04) benign(0.115) TCGA-FW-A3R5-06 9 21187599 21187599 G A IFNA4 5'Flank 0.30 TCGA-FW-A3R5-06 9 21201647 21201647 C T IFNA7 Missense_Mutation p.R173K 0.39 tolerated(0.12) possibly_damaging(0.643) TCGA-FW-A3R5-06 9 21201733 21201733 C T IFNA7 Silent p.R144R 0.12 TCGA-FW-A3R5-06 9 21206699 21206699 G A IFNA10 Missense_Mutation p.P133L 0.23 tolerated(0.12) benign(0.061) TCGA-FW-A3R5-06 9 21207021 21207021 G A IFNA10 Silent p.L26L 0.09 TCGA-FW-A3R5-06 9 21216784 21216784 G A IFNA16 Missense_Mutation p.S174F 0.37 tolerated(0.06) benign(0.249) TCGA-FW-A3R5-06 9 21216837 21216837 C T IFNA16 Silent p.G156G 0.10 TCGA-FW-A3R5-06 9 21216896 21216896 C T IFNA16 Missense_Mutation p.E137K 0.10 tolerated(0.11) benign(0.089) TCGA-FW-A3R5-06 9 21217065 21217065 G A IFNA16 Silent p.F80F 0.34 TCGA-FW-A3R5-06 9 21217225 21217225 G A IFNA16 Missense_Mutation p.P27L 0.20 deleterious(0.04) benign(0.306) TCGA-FW-A3R5-06 9 21227932 21227932 G A IFNA17 Missense_Mutation p.H81Y 0.30 deleterious(0.04) possibly_damaging(0.646) TCGA-FW-A3R5-06 9 21239413 21239413 G A IFNA14 Silent p.S174S 0.21 TCGA-FW-A3R5-06 9 21239414 21239414 G A IFNA14 Missense_Mutation p.S174F 0.22 deleterious(0.04) possibly_damaging(0.501) TCGA-FW-A3R5-06 9 21239489 21239489 C T IFNA14 Missense_Mutation p.R149K 0.30 tolerated(0.09) possibly_damaging(0.591) TCGA-FW-A3R5-06 9 21239751 21239751 G A IFNA14 Missense_Mutation p.P62S 0.38 deleterious(0.02) probably_damaging(0.919) TCGA-FW-A3R5-06 9 21239938 21239938 G A IFNA14 5'UTR 0.09 TCGA-FW-A3R5-06 9 21350466 21350466 G A IFNA6 Silent p.L141L 0.12 TCGA-FW-A3R5-06 9 21367902 21367902 C T IFNA13 Silent p.R36R 0.11 TCGA-FW-A3R5-06 9 21384669 21384669 C T IFNA2 3'UTR 0.41 TCGA-FW-A3R5-06 9 21384900 21384900 C T IFNA2 Silent p.R143R 0.32 TCGA-FW-A3R5-06 9 21440895 21440895 G A IFNA1 Missense_Mutation p.G130E 0.29 tolerated(1) benign(0.002) TCGA-FW-A3R5-06 9 21455665 21455665 C A MIR31HG RNA 0.42 TCGA-FW-A3R5-06 9 2161844 2161844 C T SMARCA2 Silent p.P1380P 0.34 TCGA-FW-A3R5-06 9 2182194 2182194 C T SMARCA2 Silent p.V1471V 0.10 TCGA-FW-A3R5-06 9 21854633 21854633 C T MTAP Missense_Mutation p.L152F 0.11 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 9 21859377 21859377 C T MTAP Missense_Mutation p.P256S 0.10 tolerated(0.11) probably_damaging(1) TCGA-FW-A3R5-06 9 21859391 21859391 C T MTAP Silent p.S260S 0.26 TCGA-FW-A3R5-06 9 22029518 22029518 C T CDKN2B-AS1 RNA 0.10 TCGA-FW-A3R5-06 9 22451350 22451350 C T DMRTA1 Missense_Mutation p.L319F 0.11 tolerated(0.54) benign(0.012) TCGA-FW-A3R5-06 9 23762076 23762076 C T ELAVL2 Missense_Mutation p.E53K 0.14 tolerated(0.08) benign(0.229) TCGA-FW-A3R5-06 9 2646354 2646354 T C VLDLR Missense_Mutation p.V502A 0.41 tolerated(1) benign(0.306) TCGA-FW-A3R5-06 9 26928394 26928394 G A PLAA Missense_Mutation p.S119L 0.09 tolerated(0.11) possibly_damaging(0.688) TCGA-FW-A3R5-06 9 26999654 26999654 G A LRRC19 Silent p.L13L 0.43 TCGA-FW-A3R5-06 9 27157863 27157863 C T TEK Silent p.I29I 0.34 TCGA-FW-A3R5-06 9 27157868 27157868 C T TEK Missense_Mutation p.S31F 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 9 27169583 27169583 G A TEK Missense_Mutation p.G195E 0.31 tolerated(0.38) probably_damaging(0.93) TCGA-FW-A3R5-06 9 27169628 27169628 G A TEK Splice_Site p.X210_splice 0.31 TCGA-FW-A3R5-06 9 27185547 27185547 C T TEK Missense_Mutation p.P416L 0.21 tolerated(0.63) benign(0.038) TCGA-FW-A3R5-06 9 2718589 2718589 G A KCNV2 Missense_Mutation p.E284K 0.24 deleterious(0) probably_damaging(0.94) TCGA-FW-A3R5-06 9 27190614 27190614 G A TEK Missense_Mutation p.G472E 0.25 deleterious(0.01) possibly_damaging(0.856) TCGA-FW-A3R5-06 9 27197330 27197330 G A TEK Missense_Mutation p.G548S 0.27 tolerated(0.09) benign(0.304) TCGA-FW-A3R5-06 9 27197484 27197484 C T TEK Missense_Mutation p.S599L 0.36 deleterious(0.01) benign(0.16) TCGA-FW-A3R5-06 9 27206694 27206694 C T TEK Nonsense_Mutation p.Q827* 0.14 TCGA-FW-A3R5-06 9 27212761 27212761 C T TEK Missense_Mutation p.R915C 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 27228254 27228254 C T TEK Missense_Mutation p.S1084L 0.12 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 9 27296668 27296668 G A EQTN Missense_Mutation p.P49S 0.20 tolerated(0.65) benign(0.002) TCGA-FW-A3R5-06 9 27949180 27949180 G A LINGO2 Missense_Mutation p.S497F 0.19 tolerated(0.27) possibly_damaging(0.845) TCGA-FW-A3R5-06 9 27949866 27949866 G A LINGO2 Silent p.A268A 0.12 TCGA-FW-A3R5-06 9 32405519 32405519 C T ACO1 Silent p.F5F 0.18 TCGA-FW-A3R5-06 9 32493803 32493803 G A DDX58 Silent p.L127L 0.14 TCGA-FW-A3R5-06 9 32500834 32500834 G A DDX58 Silent p.F70F 0.35 TCGA-FW-A3R5-06 9 32630005 32630005 C T TAF1L 3'UTR 0.23 TCGA-FW-A3R5-06 9 32630074 32630074 C T TAF1L 3'UTR 0.20 TCGA-FW-A3R5-06 9 32630909 32630909 G A TAF1L Missense_Mutation p.P1557S 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-FW-A3R5-06 9 32631512 32631512 G A TAF1L Missense_Mutation p.R1356C 0.32 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 9 32631943 32631943 G A TAF1L Missense_Mutation p.A1212V 0.40 deleterious(0.04) benign(0.028) TCGA-FW-A3R5-06 9 32631951 32631951 G A TAF1L Silent p.V1209V 0.41 TCGA-FW-A3R5-06 9 32631980 32631980 G A TAF1L Missense_Mutation p.R1200C 0.11 deleterious(0) possibly_damaging(0.75) TCGA-FW-A3R5-06 9 32633831 32633831 G A TAF1L Missense_Mutation p.P583S 0.31 deleterious(0.04) possibly_damaging(0.829) TCGA-FW-A3R5-06 9 32634069 32634069 G A TAF1L Silent p.I503I 0.20 TCGA-FW-A3R5-06 9 32634323 32634323 C T TAF1L Missense_Mutation p.E419K 0.21 deleterious(0.03) possibly_damaging(0.905) TCGA-FW-A3R5-06 9 32634652 32634652 G A TAF1L Missense_Mutation p.S309F 0.24 tolerated(0.15) benign(0.197) TCGA-FW-A3R5-06 9 328088 328088 C T DOCK8 Missense_Mutation p.P321S 0.10 tolerated(0.12) benign(0.26) TCGA-FW-A3R5-06 9 32973379 32973379 G A APTX 3'UTR 0.25 TCGA-FW-A3R5-06 9 33246683 33246683 G A SPINK4 Missense_Mutation p.G58R 0.31 deleterious(0.01) probably_damaging(0.924) TCGA-FW-A3R5-06 9 33248459 33248459 G A SPINK4 Missense_Mutation p.G84D 0.33 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 9 33294597 33294597 C T NFX1 Missense_Mutation p.H69Y 0.22 tolerated(0.06) benign(0.002) TCGA-FW-A3R5-06 9 33385622 33385622 G A AQP7 Intron 0.19 TCGA-FW-A3R5-06 9 33385766 33385766 G A AQP7 Silent p.I208I 0.23 TCGA-FW-A3R5-06 9 33385791 33385791 C T AQP7 Missense_Mutation p.G200E 0.12 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 9 33385829 33385829 G A AQP7 Silent p.F187F 0.09 TCGA-FW-A3R5-06 9 33441960 33441960 G A AQP3 3'UTR 0.27 TCGA-FW-A3R5-06 9 33443658 33443658 G A AQP3 Intron 0.20 TCGA-FW-A3R5-06 9 33462614 33462614 G A NOL6 3'UTR 0.23 TCGA-FW-A3R5-06 9 33463397 33463397 G A NOL6 Missense_Mutation p.R1013C 0.20 deleterious(0.01) possibly_damaging(0.719) TCGA-FW-A3R5-06 9 33464952 33464952 G A NOL6 Nonsense_Mutation p.R902* 0.26 TCGA-FW-A3R5-06 9 33466326 33466326 G A NOL6 Missense_Mutation p.A730V 0.22 tolerated(0.11) possibly_damaging(0.733) TCGA-FW-A3R5-06 9 33466940 33466940 G A NOL6 Silent p.P640P 0.12 TCGA-FW-A3R5-06 9 33676025 33676025 C T PTENP1 RNA 0.24 TCGA-FW-A3R5-06 9 33944535 33944535 G A UBAP2 Missense_Mutation p.S458F 0.34 deleterious(0.02) probably_damaging(0.961) TCGA-FW-A3R5-06 9 33956124 33956124 G A UBAP2 Silent p.F273F 0.15 TCGA-FW-A3R5-06 9 34381390 34381390 C T C9orf24 Missense_Mutation p.R150K 0.23 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 9 34493208 34493208 C T DNAI1 Missense_Mutation p.A233V 0.14 deleterious(0.02) probably_damaging(0.957) TCGA-FW-A3R5-06 9 34506728 34506728 C T DNAI1 Silent p.L389L 0.36 TCGA-FW-A3R5-06 9 34513176 34513176 G A DNAI1 Missense_Mutation p.G519E 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 34552812 34552812 G A CNTFR Missense_Mutation p.A270V 0.14 deleterious(0.03) benign(0.279) TCGA-FW-A3R5-06 9 34557641 34557641 G A CNTFR Missense_Mutation p.R163C 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-FW-A3R5-06 9 34564810 34564810 C T CNTFR Missense_Mutation p.E36K 0.28 tolerated(0.35) possibly_damaging(0.487) TCGA-FW-A3R5-06 9 34614060 34614060 G A DCTN3 Silent p.L150L 0.32 TCGA-FW-A3R5-06 9 34627700 34627700 G A ARID3C Silent p.F104F 0.12 TCGA-FW-A3R5-06 9 34660551 34660551 C T IL11RA Missense_Mutation p.L375F 0.24 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 9 34689743 34689743 C T CCL19 3'UTR 0.25 TCGA-FW-A3R5-06 9 34976624 34976624 G A KIAA1045 Missense_Mutation p.E246K 0.21 deleterious(0.01) benign(0.008) TCGA-FW-A3R5-06 9 35043180 35043180 G A C9orf131 Missense_Mutation p.G185E 0.28 tolerated(0.1) probably_damaging(1) TCGA-FW-A3R5-06 9 35044528 35044528 A G C9orf131 Silent p.E634E 0.12 TCGA-FW-A3R5-06 9 35045908 35045908 G A C9orf131 3'UTR 0.09 TCGA-FW-A3R5-06 9 35060446 35060446 G A VCP Missense_Mutation p.P520L 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 35079515 35079515 G A FANCG Missense_Mutation p.R3C 0.15 tolerated_low_confidence(0.17) benign(0) TCGA-FW-A3R5-06 9 35108046 35108046 G A FAM214B Missense_Mutation p.P76S 0.22 tolerated_low_confidence(0.33) benign(0.002) TCGA-FW-A3R5-06 9 35366948 35366948 C T UNC13B Missense_Mutation p.P391L 0.18 tolerated_low_confidence(0.1) benign(0) TCGA-FW-A3R5-06 9 35381118 35381118 C T UNC13B Missense_Mutation p.A717V 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 9 35400426 35400426 C T UNC13B Missense_Mutation p.S1408L 0.35 deleterious(0.05) benign(0.003) TCGA-FW-A3R5-06 9 35449850 35449850 G A ATP8B5P RNA 0.20 TCGA-FW-A3R5-06 9 35608894 35608894 C T TESK1 Missense_Mutation p.P346S 0.27 tolerated(0.21) benign(0.057) TCGA-FW-A3R5-06 9 35650207 35650207 C T SIT1 Missense_Mutation p.D111N 0.31 tolerated(0.07) benign(0.015) TCGA-FW-A3R5-06 9 35675537 35675537 G A CA9 Missense_Mutation p.D136N 0.20 tolerated(0.18) benign(0.037) TCGA-FW-A3R5-06 9 35679199 35679199 C T CA9 Missense_Mutation p.P309S 0.09 tolerated(0.06) probably_damaging(0.969) TCGA-FW-A3R5-06 9 35682215 35682215 G A TPM2 Intron 0.24 TCGA-FW-A3R5-06 9 35685445 35685445 G A TPM2 Missense_Mutation p.R160C 0.18 deleterious(0) probably_damaging(0.96) TCGA-FW-A3R5-06 9 35689971 35689971 G A TPM2 5'UTR 0.38 TCGA-FW-A3R5-06 9 35700223 35700223 G A TLN1 Missense_Mutation p.R2209C 0.10 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 9 35700224 35700224 G A TLN1 Silent p.S2208S 0.10 TCGA-FW-A3R5-06 9 35750689 35750689 G A RGP1 Silent p.P96P 0.22 TCGA-FW-A3R5-06 9 35792664 35792664 C T NPR2 Missense_Mutation p.L87F 0.24 tolerated(0.21) benign(0.139) TCGA-FW-A3R5-06 9 35793034 35793034 C T NPR2 Missense_Mutation p.P210L 0.14 tolerated(0.69) benign(0.003) TCGA-FW-A3R5-06 9 35801080 35801080 C T NPR2 Silent p.T455T 0.26 TCGA-FW-A3R5-06 9 35801756 35801756 C T NPR2 Missense_Mutation p.S518L 0.16 deleterious(0) possibly_damaging(0.581) TCGA-FW-A3R5-06 9 35802512 35802512 C T NPR2 Nonsense_Mutation p.Q575* 0.10 TCGA-FW-A3R5-06 9 35802590 35802590 C T NPR2 Missense_Mutation p.R601C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 35811403 35811403 G A SPAG8 Missense_Mutation p.P214S 0.17 tolerated_low_confidence(0.29) benign(0.099) TCGA-FW-A3R5-06 9 35846306 35846306 G A TMEM8B Missense_Mutation p.R142K 0.11 tolerated(0.81) benign(0.001) TCGA-FW-A3R5-06 9 35853227 35853227 C T TMEM8B Silent p.F352F 0.22 TCGA-FW-A3R5-06 9 35869520 35869520 C T OR13J1 Silent p.R293R 0.22 TCGA-FW-A3R5-06 9 35870088 35870088 C T OR13J1 Missense_Mutation p.S104N 0.13 deleterious(0.01) benign(0.008) TCGA-FW-A3R5-06 9 36117063 36117063 C T RECK Silent p.L714L 0.25 TCGA-FW-A3R5-06 9 36122898 36122898 C T RECK Silent p.V924V 0.22 TCGA-FW-A3R5-06 9 36169514 36169514 C T CCIN Silent p.F5F 0.22 TCGA-FW-A3R5-06 9 36170360 36170360 G A CCIN Silent p.Q287Q 0.12 TCGA-FW-A3R5-06 9 36170723 36170723 G A CCIN Silent p.K408K 0.28 TCGA-FW-A3R5-06 9 36352839 36352839 G A RNF38 Missense_Mutation p.P360S 0.14 tolerated(0.26) benign(0.049) TCGA-FW-A3R5-06 9 36651812 36651812 C T MELK Missense_Mutation p.R331C 0.34 deleterious(0.05) possibly_damaging(0.832) TCGA-FW-A3R5-06 9 36846859 36846859 G A PAX5 Silent p.F360F 0.28 TCGA-FW-A3R5-06 9 37486584 37486584 C T POLR1E Intron 0.48 TCGA-FW-A3R5-06 9 37707446 37707446 G A FRMPD1 Silent p.R45R 0.28 TCGA-FW-A3R5-06 9 37724314 37724314 G A FRMPD1 Silent p.V203V 0.13 TCGA-FW-A3R5-06 9 37731005 37731005 G A FRMPD1 Missense_Mutation p.D255N 0.23 tolerated(0.06) benign(0.4) TCGA-FW-A3R5-06 9 37740201 37740201 C T FRMPD1 Missense_Mutation p.P559L 0.17 tolerated(0.31) benign(0.004) TCGA-FW-A3R5-06 9 37740549 37740549 C T FRMPD1 Missense_Mutation p.S675F 0.13 deleterious(0.02) benign(0.316) TCGA-FW-A3R5-06 9 37744383 37744383 C T FRMPD1 Intron 0.13 TCGA-FW-A3R5-06 9 37744553 37744553 C T FRMPD1 Silent p.L842L 0.35 TCGA-FW-A3R5-06 9 37744643 37744643 G A FRMPD1 Missense_Mutation p.E872K 0.25 tolerated(0.06) benign(0.025) TCGA-FW-A3R5-06 9 37948651 37948651 C T SHB Missense_Mutation p.D443N 0.10 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 9 37974775 37974775 G A SHB Missense_Mutation p.P300S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 38395848 38395848 C T ALDH1B1 Missense_Mutation p.P35S 0.26 tolerated(0.3) benign(0.003) TCGA-FW-A3R5-06 9 38397257 38397257 G A ALDH1B1 Silent p.E504E 0.18 TCGA-FW-A3R5-06 9 38413338 38413338 G A IGFBPL1 Missense_Mutation p.P195S 0.15 tolerated(0.14) possibly_damaging(0.822) TCGA-FW-A3R5-06 9 39073774 39073774 G A CNTNAP3 3'UTR 0.17 TCGA-FW-A3R5-06 9 39109233 39109233 C T CNTNAP3 Silent p.Q763Q 0.41 TCGA-FW-A3R5-06 9 39118153 39118153 C T CNTNAP3 Silent p.G728G 0.14 TCGA-FW-A3R5-06 9 39149936 39149936 G A CNTNAP3 Missense_Mutation p.P506S 0.23 tolerated(0.15) benign(0.074) TCGA-FW-A3R5-06 9 39888172 39888172 G A SPATA31A2 Missense_Mutation p.E387K 0.46 tolerated(0.64) possibly_damaging(0.682) TCGA-FW-A3R5-06 9 40702809 40702809 G A SPATA31A3 Missense_Mutation p.D156N 0.17 tolerated(0.58) possibly_damaging(0.908) TCGA-FW-A3R5-06 9 40774191 40774191 G A ZNF658 Missense_Mutation p.L362F 0.30 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 9 40774549 40774549 G A ZNF658 Silent p.S242S 0.19 TCGA-FW-A3R5-06 9 40774551 40774551 A T ZNF658 Missense_Mutation p.S242T 0.20 tolerated(0.6) benign(0.202) TCGA-FW-A3R5-06 9 41962660 41962660 C T RP11-204M4.2 RNA 0.12 TCGA-FW-A3R5-06 9 41963935 41963935 C T RP11-204M4.2 RNA 0.09 TCGA-FW-A3R5-06 9 420556 420556 C T DOCK8 Silent p.F1332F 0.34 TCGA-FW-A3R5-06 9 43625229 43625229 G A SPATA31A6 Missense_Mutation p.P1153L 0.09 tolerated(0.09) benign(0.39) TCGA-FW-A3R5-06 9 43625538 43625538 G A SPATA31A6 Missense_Mutation p.P1050L 0.47 tolerated(0.12) possibly_damaging(0.793) TCGA-FW-A3R5-06 9 43626727 43626727 T A SPATA31A6 Nonsense_Mutation p.K654* 0.48 TCGA-FW-A3R5-06 9 43627663 43627663 C T SPATA31A6 Missense_Mutation p.E342K 0.18 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 9 43815962 43815962 G A CNTNAP3B Missense_Mutation p.G239E 0.18 deleterious(0.02) probably_damaging(0.96) TCGA-FW-A3R5-06 9 4544603 4544603 A G SLC1A1 Missense_Mutation p.N43S 0.14 tolerated(0.48) benign(0.002) TCGA-FW-A3R5-06 9 4576603 4576603 G A SLC1A1 Missense_Mutation p.E345K 0.09 deleterious(0.01) probably_damaging(0.92) TCGA-FW-A3R5-06 9 5069154 5069154 C T JAK2 Missense_Mutation p.R487C 0.36 deleterious(0.04) possibly_damaging(0.891) TCGA-FW-A3R5-06 9 5072529 5072529 T C JAK2 Missense_Mutation p.F560S 0.31 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 5185414 5185414 C T INSL6 Silent p.R63R 0.35 TCGA-FW-A3R5-06 9 5335409 5335409 G A RLN1 Missense_Mutation p.R134C 0.31 tolerated(0.18) possibly_damaging(0.568) TCGA-FW-A3R5-06 9 6012345 6012345 G A RANBP6 Missense_Mutation p.S1088L 0.18 tolerated(0.08) possibly_damaging(0.558) TCGA-FW-A3R5-06 9 6013256 6013256 G A RANBP6 Silent p.S784S 0.44 TCGA-FW-A3R5-06 9 6254512 6254512 G A IL33 Missense_Mutation p.D191N 0.12 tolerated(0.17) benign(0.203) TCGA-FW-A3R5-06 9 6256174 6256174 G A IL33 3'UTR 0.28 TCGA-FW-A3R5-06 9 6328575 6328575 G A TPD52L3 5'UTR 0.37 TCGA-FW-A3R5-06 9 6328916 6328916 G A TPD52L3 Silent p.R107R 0.36 TCGA-FW-A3R5-06 9 6587206 6587206 G A GLDC Silent p.F595F 0.34 TCGA-FW-A3R5-06 9 67938622 67938622 G A ANKRD20A1 Missense_Mutation p.E253K 0.13 tolerated(0.2) possibly_damaging(0.874) TCGA-FW-A3R5-06 9 69113627 69113627 C T RP11-87H9.3 5'Flank 0.09 TCGA-FW-A3R5-06 9 70177179 70177179 G A FOXD4L5 Missense_Mutation p.R269C 0.21 deleterious(0) probably_damaging(0.973) TCGA-FW-A3R5-06 9 711134 711134 C T KANK1 Missense_Mutation p.P123L 0.48 tolerated(0.37) benign(0.001) TCGA-FW-A3R5-06 9 71114247 71114247 G A PGM5 Silent p.R528R 0.27 TCGA-FW-A3R5-06 9 71478775 71478775 G A PIP5K1B Missense_Mutation p.G31D 0.19 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 9 71532512 71532512 C T PIP5K1B Missense_Mutation p.H274Y 0.25 deleterious(0.03) benign(0.093) TCGA-FW-A3R5-06 9 71532629 71532629 G A PIP5K1B Missense_Mutation p.G313S 0.20 deleterious(0.03) probably_damaging(0.981) TCGA-FW-A3R5-06 9 71538258 71538258 G A PIP5K1B Missense_Mutation p.R386K 0.19 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 9 71549884 71549884 C T PIP5K1B Missense_Mutation p.S427L 0.20 tolerated(0.14) benign(0.02) TCGA-FW-A3R5-06 9 71555572 71555572 C T PIP5K1B Silent p.S456S 0.17 TCGA-FW-A3R5-06 9 71628475 71628475 C T PRKACG Silent p.Q178Q 0.21 TCGA-FW-A3R5-06 9 71628817 71628817 C T PRKACG Silent p.Q64Q 0.11 TCGA-FW-A3R5-06 9 71628876 71628876 C T PRKACG Missense_Mutation p.E45K 0.20 tolerated(0.12) benign(0.059) TCGA-FW-A3R5-06 9 71833266 71833266 C T TJP2 Silent p.V142V 0.34 TCGA-FW-A3R5-06 9 71864319 71864319 G A TJP2 Missense_Mutation p.R1001Q 0.28 tolerated(0.32) benign(0.121) TCGA-FW-A3R5-06 9 72000820 72000820 C T FAM189A2 Silent p.T271T 0.23 TCGA-FW-A3R5-06 9 72071175 72071175 G A APBA1 Silent p.F592F 0.21 TCGA-FW-A3R5-06 9 72086592 72086592 G A APBA1 Missense_Mutation p.S439L 0.31 deleterious(0.02) possibly_damaging(0.835) TCGA-FW-A3R5-06 9 72131027 72131027 G A APBA1 Missense_Mutation p.S367L 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 72131412 72131412 C T APBA1 Missense_Mutation p.D239N 0.37 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 9 72435761 72435761 G A C9orf135 5'UTR 0.17 TCGA-FW-A3R5-06 9 72435762 72435762 G A C9orf135 5'UTR 0.17 TCGA-FW-A3R5-06 9 72471531 72471531 G A C9orf135 Missense_Mutation p.E108K 0.28 tolerated(0.18) benign(0.015) TCGA-FW-A3R5-06 9 72659033 72659033 G A MAMDC2 5'UTR 0.27 TCGA-FW-A3R5-06 9 72723336 72723336 G A MAMDC2 Missense_Mutation p.E120K 0.24 tolerated(0.26) benign(0.024) TCGA-FW-A3R5-06 9 72724649 72724649 G A MAMDC2 Missense_Mutation p.G145D 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 72785300 72785300 G A MAMDC2 Intron 0.11 TCGA-FW-A3R5-06 9 72840925 72840925 G A MAMDC2 Missense_Mutation p.D680N 0.17 tolerated(0.29) benign(0.016) TCGA-FW-A3R5-06 9 72967122 72967122 C T SMC5 Missense_Mutation p.P1061S 0.27 tolerated(0.49) benign(0.017) TCGA-FW-A3R5-06 9 73150800 73150800 G A TRPM3 3'UTR 0.29 TCGA-FW-A3R5-06 9 73152144 73152144 C T TRPM3 Silent p.S1283S 0.34 TCGA-FW-A3R5-06 9 73235205 73235205 G A TRPM3 Missense_Mutation p.P627L 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 9 73442842 73442842 C T TRPM3 Silent p.G298G 0.32 TCGA-FW-A3R5-06 9 73477952 73477952 C T TRPM3 Missense_Mutation p.E112K 0.22 tolerated(0.16) benign(0.39) TCGA-FW-A3R5-06 9 74332987 74332987 G A TMEM2 Missense_Mutation p.P759L 0.11 deleterious(0) probably_damaging(0.986) TCGA-FW-A3R5-06 9 74347430 74347430 G A TMEM2 Missense_Mutation p.P467L 0.37 deleterious(0.01) benign(0.031) TCGA-FW-A3R5-06 9 74347431 74347431 G A TMEM2 Missense_Mutation p.P467S 0.38 deleterious(0) possibly_damaging(0.474) TCGA-FW-A3R5-06 9 74361203 74361203 G A TMEM2 Missense_Mutation p.S129F 0.11 deleterious(0.01) benign(0.252) TCGA-FW-A3R5-06 9 74825629 74825629 C T GDA Silent p.T137T 0.18 TCGA-FW-A3R5-06 9 74860079 74860079 G A GDA Missense_Mutation p.G384D 0.19 tolerated(1) benign(0) TCGA-FW-A3R5-06 9 74863238 74863238 C T GDA Missense_Mutation p.P449S 0.18 tolerated(0.1) probably_damaging(0.99) TCGA-FW-A3R5-06 9 75387345 75387345 C T TMC1 Missense_Mutation p.S253F 0.09 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 9 75403345 75403345 C T TMC1 Silent p.I325I 0.27 TCGA-FW-A3R5-06 9 75533671 75533671 C T ALDH1A1 Missense_Mutation p.G272E 0.16 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 75785107 75785107 T C ANXA1 3'UTR 0.29 TCGA-FW-A3R5-06 9 77257578 77257578 C T RORB Nonsense_Mutation p.Q162* 0.37 TCGA-FW-A3R5-06 9 77282723 77282723 G A RORB Silent p.V339V 0.32 TCGA-FW-A3R5-06 9 77286708 77286708 G A RORB Missense_Mutation p.R372Q 0.25 deleterious(0) probably_damaging(0.921) TCGA-FW-A3R5-06 9 77286782 77286782 C T RORB Nonsense_Mutation p.Q397* 0.34 TCGA-FW-A3R5-06 9 77300426 77300426 G C RORB Silent p.G424G 0.25 TCGA-FW-A3R5-06 9 77343191 77343191 G A TRPM6 Missense_Mutation p.H1967Y 0.23 deleterious(0.02) benign(0.357) TCGA-FW-A3R5-06 9 77347614 77347614 G A TRPM6 Missense_Mutation p.P1939S 0.19 tolerated(0.15) possibly_damaging(0.838) TCGA-FW-A3R5-06 9 77376986 77376986 C T TRPM6 Missense_Mutation p.R1534K 0.14 tolerated_low_confidence(0.96) benign(0.003) TCGA-FW-A3R5-06 9 77376999 77376999 G A TRPM6 Missense_Mutation p.L1530F 0.16 tolerated_low_confidence(0.06) benign(0.021) TCGA-FW-A3R5-06 9 77377329 77377329 C T TRPM6 Missense_Mutation p.A1420T 0.28 tolerated_low_confidence(0.14) benign(0.002) TCGA-FW-A3R5-06 9 77377374 77377374 C T TRPM6 Missense_Mutation p.E1405K 0.28 tolerated_low_confidence(0.11) benign(0.004) TCGA-FW-A3R5-06 9 77377921 77377921 C T TRPM6 Silent p.L1222L 0.23 TCGA-FW-A3R5-06 9 77378026 77378026 C T TRPM6 Silent p.L1187L 0.16 TCGA-FW-A3R5-06 9 77386640 77386640 C T TRPM6 Missense_Mutation p.R1172Q 0.08 tolerated(0.11) benign(0.02) TCGA-FW-A3R5-06 9 77400934 77400934 G A TRPM6 Silent p.F925F 0.20 TCGA-FW-A3R5-06 9 77415255 77415255 G A TRPM6 Missense_Mutation p.P718L 0.23 deleterious(0) probably_damaging(0.963) TCGA-FW-A3R5-06 9 77415293 77415293 C T TRPM6 Silent p.S705S 0.25 TCGA-FW-A3R5-06 9 77431653 77431653 G A TRPM6 Silent p.L414L 0.24 TCGA-FW-A3R5-06 9 77442628 77442628 G A TRPM6 Intron 0.32 TCGA-FW-A3R5-06 9 77442766 77442766 C T TRPM6 Missense_Mutation p.G257S 0.10 deleterious(0.02) probably_damaging(0.977) TCGA-FW-A3R5-06 9 77455005 77455005 C T TRPM6 Missense_Mutation p.S160N 0.15 tolerated(0.14) possibly_damaging(0.889) TCGA-FW-A3R5-06 9 77455135 77455135 C T TRPM6 Missense_Mutation p.D117N 0.34 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 9 78547308 78547308 A C PCSK5 Missense_Mutation p.K69T 0.32 deleterious(0.02) benign(0.035) TCGA-FW-A3R5-06 9 78547309 78547309 G A PCSK5 Silent p.K69K 0.31 TCGA-FW-A3R5-06 9 78638703 78638703 G A PCSK5 Missense_Mutation p.G154E 0.14 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 78784639 78784639 G A PCSK5 Missense_Mutation p.E547K 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 78789991 78789991 C T PCSK5 Missense_Mutation p.R616C 0.30 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 78796447 78796447 C T PCSK5 Silent p.L713L 0.32 TCGA-FW-A3R5-06 9 78799654 78799654 G A PCSK5 Missense_Mutation p.E755K 0.47 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 79267429 79267429 C T PRUNE2 Missense_Mutation p.E2843K 0.20 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 79323399 79323399 G A PRUNE2 Missense_Mutation p.S1264F 0.33 tolerated(0.06) benign(0.102) TCGA-FW-A3R5-06 9 79323636 79323636 A T PRUNE2 Missense_Mutation p.V1185E 0.22 tolerated(0.67) benign(0.03) TCGA-FW-A3R5-06 9 79324106 79324106 C T PRUNE2 Silent p.G1028G 0.33 TCGA-FW-A3R5-06 9 79324450 79324450 C T PRUNE2 Missense_Mutation p.E914K 0.20 deleterious(0.02) benign(0.086) TCGA-FW-A3R5-06 9 79324651 79324651 C T PRUNE2 Missense_Mutation p.E847K 0.28 tolerated(0.57) benign(0.108) TCGA-FW-A3R5-06 9 79325627 79325627 G A PRUNE2 Silent p.F521F 0.27 TCGA-FW-A3R5-06 9 79326248 79326248 C T PRUNE2 Silent p.Q314Q 0.38 TCGA-FW-A3R5-06 9 79328522 79328522 C T PRUNE2 Missense_Mutation p.R291Q 0.25 tolerated(0.46) benign(0.101) TCGA-FW-A3R5-06 9 79635164 79635164 C T FOXB2 Silent p.P198P 0.37 TCGA-FW-A3R5-06 9 79792778 79792778 C T VPS13A Intron 0.36 TCGA-FW-A3R5-06 9 79980472 79980472 C T VPS13A Missense_Mutation p.H2770Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 79983001 79983001 C T VPS13A Silent p.F2834F 0.17 TCGA-FW-A3R5-06 9 80144023 80144023 C T GNA14 Missense_Mutation p.D91N 0.18 tolerated(0.23) benign(0) TCGA-FW-A3R5-06 9 80943007 80943007 C T PSAT1 Missense_Mutation p.P304S 0.23 deleterious(0) possibly_damaging(0.726) TCGA-FW-A3R5-06 9 82319705 82319705 C T TLE4 Missense_Mutation p.S206L 0.30 tolerated(0.32) benign(0.003) TCGA-FW-A3R5-06 9 82321756 82321756 C T TLE4 Missense_Mutation p.P293L 0.29 deleterious(0.01) possibly_damaging(0.786) TCGA-FW-A3R5-06 9 82323694 82323694 C T TLE4 Missense_Mutation p.S419L 0.25 deleterious(0.04) benign(0.097) TCGA-FW-A3R5-06 9 8331622 8331622 C T PTPRD Missense_Mutation p.E1832K 0.32 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 9 8404586 8404586 C T PTPRD Silent p.A1387A 0.22 TCGA-FW-A3R5-06 9 8449744 8449744 G A PTPRD Silent p.R1323R 0.11 TCGA-FW-A3R5-06 9 84530438 84530438 C T SPATA31D5P RNA 0.09 TCGA-FW-A3R5-06 9 84531792 84531792 C T SPATA31D5P RNA 0.32 TCGA-FW-A3R5-06 9 84532013 84532013 C T SPATA31D5P RNA 0.17 TCGA-FW-A3R5-06 9 84532026 84532026 C T SPATA31D5P RNA 0.12 TCGA-FW-A3R5-06 9 84532340 84532340 G A SPATA31D5P RNA 0.13 TCGA-FW-A3R5-06 9 84532881 84532881 G A SPATA31D5P RNA 0.29 TCGA-FW-A3R5-06 9 84548090 84548090 G A RP11-383M4.6 Intron 0.24 TCGA-FW-A3R5-06 9 84549011 84549011 G A RP11-383M4.6 Intron 0.31 TCGA-FW-A3R5-06 9 84549058 84549058 G A RP11-383M4.6 Intron 0.42 TCGA-FW-A3R5-06 9 84549533 84549533 A T RP11-383M4.6 Intron 0.35 TCGA-FW-A3R5-06 9 84549534 84549534 G A RP11-383M4.6 Intron 0.35 TCGA-FW-A3R5-06 9 84564673 84564673 G A RP11-383M4.6 Intron 0.17 TCGA-FW-A3R5-06 9 84564785 84564785 G A RP11-383M4.6 Intron 0.33 TCGA-FW-A3R5-06 9 84605985 84605985 C T SPATA31D1 Silent p.L200L 0.36 TCGA-FW-A3R5-06 9 84606558 84606558 G A SPATA31D1 Silent p.G391G 0.22 TCGA-FW-A3R5-06 9 84607827 84607827 G A SPATA31D1 Silent p.G814G 0.35 TCGA-FW-A3R5-06 9 84609301 84609301 G A SPATA31D1 Missense_Mutation p.G1306R 0.16 tolerated(0.11) probably_damaging(0.998) TCGA-FW-A3R5-06 9 84609371 84609371 G A SPATA31D1 Missense_Mutation p.G1329E 0.14 tolerated(0.99) benign(0.001) TCGA-FW-A3R5-06 9 84609614 84609614 G A SPATA31D1 Missense_Mutation p.R1410K 0.29 tolerated(0.68) benign(0.093) TCGA-FW-A3R5-06 9 8471043 8471043 C T PTPRD Silent p.G1152G 0.10 TCGA-FW-A3R5-06 9 8485972 8485972 C T PTPRD Missense_Mutation p.G949S 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 9 8486138 8486138 G A PTPRD Silent p.F893F 0.45 TCGA-FW-A3R5-06 9 8492966 8492966 G A PTPRD Missense_Mutation p.S788F 0.09 deleterious(0.04) probably_damaging(0.996) TCGA-FW-A3R5-06 9 8499829 8499829 G A PTPRD Missense_Mutation p.P714S 0.12 deleterious(0) probably_damaging(0.953) TCGA-FW-A3R5-06 9 8500760 8500760 C T PTPRD Missense_Mutation p.E708K 0.37 tolerated(0.08) benign(0) TCGA-FW-A3R5-06 9 8500768 8500768 C T PTPRD Missense_Mutation p.R705Q 0.38 deleterious(0) benign(0) TCGA-FW-A3R5-06 9 8518118 8518118 G A PTPRD Nonsense_Mutation p.Q425* 0.36 TCGA-FW-A3R5-06 9 8521544 8521544 G A PTPRD Missense_Mutation p.R232C 0.30 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 9 8528672 8528672 C T PTPRD Missense_Mutation p.D154N 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-FW-A3R5-06 9 85622405 85622405 G A RASEF Silent p.I325I 0.39 TCGA-FW-A3R5-06 9 85863064 85863064 C T FRMD3 Silent p.V521V 0.29 TCGA-FW-A3R5-06 9 85926837 85926837 G A FRMD3 Silent p.V246V 0.26 TCGA-FW-A3R5-06 9 86468627 86468627 G A KIF27 Missense_Mutation p.R1092C 0.29 deleterious(0) benign(0.001) TCGA-FW-A3R5-06 9 86518066 86518066 G A KIF27 Missense_Mutation p.S456L 0.22 tolerated(0.1) benign(0.001) TCGA-FW-A3R5-06 9 86518880 86518880 G A KIF27 Missense_Mutation p.L185F 0.35 deleterious(0.02) benign(0.309) TCGA-FW-A3R5-06 9 86523440 86523440 G A KIF27 Silent p.D142D 0.22 TCGA-FW-A3R5-06 9 86617114 86617114 C T RMI1 Missense_Mutation p.H405Y 0.39 deleterious(0.04) benign(0.252) TCGA-FW-A3R5-06 9 86894926 86894926 C T SLC28A3 Missense_Mutation p.G598R 0.18 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 9 87285691 87285691 C A NTRK2 Missense_Mutation p.P10T 0.13 tolerated_low_confidence(0.27) probably_damaging(0.966) TCGA-FW-A3R5-06 9 87482336 87482336 G A NTRK2 Silent p.K541K 0.20 TCGA-FW-A3R5-06 9 87636167 87636167 G A NTRK2 Missense_Mutation p.V778M 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 9 88201751 88201751 G A AGTPBP1 Missense_Mutation p.P970S 0.19 deleterious(0.02) probably_damaging(0.981) TCGA-FW-A3R5-06 9 88284438 88284438 G A AGTPBP1 Silent p.I208I 0.09 TCGA-FW-A3R5-06 9 88284477 88284477 G A AGTPBP1 Silent p.S195S 0.09 TCGA-FW-A3R5-06 9 88307707 88307707 G A AGTPBP1 Silent p.I18I 0.19 TCGA-FW-A3R5-06 9 88611379 88611379 C T NAA35 Nonsense_Mutation p.R315* 0.11 TCGA-FW-A3R5-06 9 90254384 90254384 C T DAPK1 Missense_Mutation p.T180I 0.20 deleterious(0) possibly_damaging(0.684) TCGA-FW-A3R5-06 9 90321118 90321118 C T DAPK1 Silent p.V1044V 0.17 TCGA-FW-A3R5-06 9 90498113 90498113 G A SPATA31E1 Missense_Mutation p.E103K 0.33 tolerated(1) benign(0) TCGA-FW-A3R5-06 9 90500456 90500456 G A SPATA31E1 Missense_Mutation p.G352S 0.38 tolerated(0.78) probably_damaging(0.925) TCGA-FW-A3R5-06 9 90500477 90500477 C T SPATA31E1 Missense_Mutation p.P359S 0.08 tolerated(1) probably_damaging(0.946) TCGA-FW-A3R5-06 9 90500527 90500527 G A SPATA31E1 Missense_Mutation p.M375I 0.42 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 9 90500731 90500731 C T SPATA31E1 Silent p.L443L 0.11 TCGA-FW-A3R5-06 9 90501062 90501062 G A SPATA31E1 Missense_Mutation p.E554K 0.28 tolerated(0.21) benign(0.054) TCGA-FW-A3R5-06 9 90501704 90501704 C T SPATA31E1 Missense_Mutation p.H768Y 0.24 deleterious(0) probably_damaging(0.92) TCGA-FW-A3R5-06 9 90501775 90501775 G A SPATA31E1 Missense_Mutation p.M791I 0.16 tolerated(0.47) benign(0) TCGA-FW-A3R5-06 9 90502084 90502084 C T SPATA31E1 Silent p.F894F 0.15 TCGA-FW-A3R5-06 9 90502112 90502112 G A SPATA31E1 Missense_Mutation p.G904R 0.15 tolerated(0.3) possibly_damaging(0.801) TCGA-FW-A3R5-06 9 90502394 90502394 G A SPATA31E1 Missense_Mutation p.E998K 0.15 tolerated(0.05) possibly_damaging(0.674) TCGA-FW-A3R5-06 9 90502575 90502575 G A SPATA31E1 Missense_Mutation p.G1058E 0.15 tolerated(0.06) benign(0.113) TCGA-FW-A3R5-06 9 90502893 90502893 C T SPATA31E1 Missense_Mutation p.S1164F 0.38 tolerated(0.07) possibly_damaging(0.828) TCGA-FW-A3R5-06 9 90503026 90503026 G A SPATA31E1 Silent p.R1208R 0.33 TCGA-FW-A3R5-06 9 90503081 90503081 G A SPATA31E1 Missense_Mutation p.A1227T 0.13 tolerated(0.07) possibly_damaging(0.71) TCGA-FW-A3R5-06 9 90503636 90503636 C T SPATA31E1 Missense_Mutation p.P1412S 0.31 tolerated(0.12) possibly_damaging(0.793) TCGA-FW-A3R5-06 9 90534862 90534862 G A SPATA31C1 RNA 0.09 TCGA-FW-A3R5-06 9 90535853 90535853 C T SPATA31C1 RNA 0.21 TCGA-FW-A3R5-06 9 90584785 90584785 G A CDK20 Missense_Mutation p.P205S 0.08 deleterious(0.05) possibly_damaging(0.893) TCGA-FW-A3R5-06 9 91262450 91262450 G A RP13-60M5.2 RNA 0.26 TCGA-FW-A3R5-06 9 91606031 91606031 C T C9orf47 Missense_Mutation p.P41S 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-FW-A3R5-06 9 91616823 91616823 G A S1PR3 Silent p.E236E 0.21 TCGA-FW-A3R5-06 9 91616901 91616901 C T S1PR3 Silent p.L262L 0.41 TCGA-FW-A3R5-06 9 91617111 91617111 C T S1PR3 Silent p.L332L 0.20 TCGA-FW-A3R5-06 9 91657096 91657096 G A SHC3 Missense_Mutation p.S402F 0.18 deleterious(0) probably_damaging(0.968) TCGA-FW-A3R5-06 9 916880 916880 C T DMRT1 Missense_Mutation p.P314S 0.09 tolerated(0.22) benign(0.041) TCGA-FW-A3R5-06 9 91692774 91692774 C T SHC3 Missense_Mutation p.G197E 0.25 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 9 91931305 91931305 T C CKS2 Missense_Mutation p.F69L 0.14 deleterious(0.04) benign(0.013) TCGA-FW-A3R5-06 9 91994072 91994072 G A SEMA4D Silent p.I712I 0.12 TCGA-FW-A3R5-06 9 91996156 91996156 G A SEMA4D Missense_Mutation p.P518S 0.43 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 92006331 92006331 C T SEMA4D Splice_Site p.X208_splice 0.18 TCGA-FW-A3R5-06 9 93375806 93375806 C T DIRAS2 Missense_Mutation p.E102K 0.08 tolerated(0.13) benign(0.007) TCGA-FW-A3R5-06 9 93624558 93624558 C T SYK Missense_Mutation p.R217C 0.16 tolerated(0.05) probably_damaging(0.962) TCGA-FW-A3R5-06 9 93629424 93629424 G A SYK Silent p.A286A 0.25 TCGA-FW-A3R5-06 9 93637034 93637034 G A SYK Missense_Mutation p.E362K 0.18 tolerated(1) benign(0.15) TCGA-FW-A3R5-06 9 94123928 94123928 G A AUH Silent p.L82L 0.19 TCGA-FW-A3R5-06 9 94486319 94486319 G A ROR2 Silent p.V819V 0.11 TCGA-FW-A3R5-06 9 94486955 94486955 G A ROR2 Silent p.S607S 0.29 TCGA-FW-A3R5-06 9 94488981 94488981 G A ROR2 Missense_Mutation p.P410S 0.35 tolerated(0.06) possibly_damaging(0.566) TCGA-FW-A3R5-06 9 94519661 94519661 C T ROR2 Missense_Mutation p.R119Q 0.21 deleterious(0) probably_damaging(0.934) TCGA-FW-A3R5-06 9 94519722 94519722 C T ROR2 Missense_Mutation p.D99N 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 9 94809925 94809925 G A SPTLC1 Silent p.C318C 0.19 TCGA-FW-A3R5-06 9 95148533 95148533 C T OGN Missense_Mutation p.E226K 0.25 deleterious(0.01) possibly_damaging(0.616) TCGA-FW-A3R5-06 9 95263154 95263154 C T ECM2 Missense_Mutation p.D596N 0.21 tolerated(0.1) benign(0.043) TCGA-FW-A3R5-06 9 95263230 95263230 C T ECM2 Silent p.R570R 0.20 TCGA-FW-A3R5-06 9 95274346 95274346 C T ECM2 Missense_Mutation p.D373N 0.29 tolerated(0.12) probably_damaging(0.923) TCGA-FW-A3R5-06 9 95410411 95410411 G A IPPK Missense_Mutation p.P145L 0.11 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 9 95480899 95480899 G A BICD2 Silent p.I676I 0.10 TCGA-FW-A3R5-06 9 95608714 95608714 G A ZNF484 Silent p.F787F 0.32 TCGA-FW-A3R5-06 9 95610021 95610021 G A ZNF484 Missense_Mutation p.H352Y 0.25 deleterious(0) benign(0.082) TCGA-FW-A3R5-06 9 95646896 95646896 C T RP11-526D8.7 RNA 0.26 TCGA-FW-A3R5-06 9 95847007 95847007 C T SUSD3 Missense_Mutation p.P249L 0.23 tolerated_low_confidence(0.33) benign(0.024) TCGA-FW-A3R5-06 9 96021270 96021270 C T WNK2 Missense_Mutation p.P814S 0.27 possibly_damaging(0.641) TCGA-FW-A3R5-06 9 96024216 96024216 C T WNK2 Missense_Mutation p.P1063S 0.18 unknown(0) TCGA-FW-A3R5-06 9 96030073 96030073 G A WNK2 Missense_Mutation p.E1248K 0.21 unknown(0) TCGA-FW-A3R5-06 9 96031005 96031005 C T WNK2 Missense_Mutation p.S1337F 0.20 unknown(0) TCGA-FW-A3R5-06 9 96051383 96051383 C T WNK2 Silent p.L1486L 0.33 TCGA-FW-A3R5-06 9 96055276 96055276 C T WNK2 Silent p.F1880F 0.25 TCGA-FW-A3R5-06 9 96080179 96080179 G A WNK2 Missense_Mutation p.R2255K 0.36 unknown(0) TCGA-FW-A3R5-06 9 96097715 96097715 G A C9orf129 Silent p.F102F 0.21 TCGA-FW-A3R5-06 9 96294492 96294492 C T FAM120A Missense_Mutation p.P597L 0.22 deleterious(0.02) benign(0.246) TCGA-FW-A3R5-06 9 96312912 96312912 C T FAM120A Missense_Mutation p.A738V 0.31 deleterious(0.02) possibly_damaging(0.833) TCGA-FW-A3R5-06 9 96420455 96420455 C T PHF2 Silent p.P392P 0.14 TCGA-FW-A3R5-06 9 96827036 96827036 C T PTPDC1 Silent p.V5V 0.31 TCGA-FW-A3R5-06 9 96860798 96860798 C T PTPDC1 Silent p.A648A 0.33 TCGA-FW-A3R5-06 9 97080982 97080982 G A NUTM2F Missense_Mutation p.P679L 0.27 tolerated(0.9) possibly_damaging(0.627) TCGA-FW-A3R5-06 9 97081904 97081904 G A NUTM2F Silent p.T492T 0.34 TCGA-FW-A3R5-06 9 97082625 97082625 C T NUTM2F Silent p.G411G 0.09 TCGA-FW-A3R5-06 9 97082687 97082687 G A NUTM2F Missense_Mutation p.P391S 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 9 97082867 97082867 G A NUTM2F Missense_Mutation p.P331S 0.25 tolerated(0.06) benign(0.139) TCGA-FW-A3R5-06 9 97087560 97087560 G A NUTM2F Missense_Mutation p.P225S 0.61 tolerated(0.37) probably_damaging(1) TCGA-FW-A3R5-06 9 97209106 97209106 C T HIATL1 Missense_Mutation p.S244L 0.18 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 9 97218585 97218585 C T HIATL1 Silent p.A364A 0.22 TCGA-FW-A3R5-06 9 97355969 97355969 G A FBP2 Silent p.L14L 0.18 TCGA-FW-A3R5-06 9 98209303 98209303 G A PTCH1 Missense_Mutation p.P1412L 0.09 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-FW-A3R5-06 9 98209620 98209620 G A PTCH1 Silent p.P1306P 0.30 TCGA-FW-A3R5-06 9 98209632 98209632 G A PTCH1 Silent p.P1302P 0.27 TCGA-FW-A3R5-06 9 98677961 98677961 C T ERCC6L2 Missense_Mutation p.S278L 0.14 tolerated(0.15) benign(0.392) TCGA-FW-A3R5-06 9 98728846 98728846 A G ERCC6L2 Silent p.Q661Q 0.25 TCGA-FW-A3R5-06 9 98729010 98729010 C T ERCC6L2 3'UTR 0.20 TCGA-FW-A3R5-06 9 99003048 99003048 C T HSD17B3 Missense_Mutation p.E272K 0.19 tolerated(0.13) benign(0.367) TCGA-FW-A3R5-06 9 99012059 99012059 G A HSD17B3 Missense_Mutation p.H155Y 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-FW-A3R5-06 9 990476 990476 G A DMRT3 Missense_Mutation p.R297Q 0.19 deleterious(0.04) benign(0.105) TCGA-FW-A3R5-06 9 990672 990672 C T DMRT3 Silent p.F362F 0.15 TCGA-FW-A3R5-06 9 99126776 99126776 G A SLC35D2 Silent p.F83F 0.26 TCGA-FW-A3R5-06 9 99150470 99150470 T C ZNF367 3'UTR 0.20 TCGA-FW-A3R5-06 9 99160471 99160471 G A ZNF367 Silent p.L182L 0.21 TCGA-FW-A3R5-06 9 99694431 99694431 G A NUTM2G Silent p.E148E 0.24 TCGA-FW-A3R5-06 9 99694433 99694433 G A NUTM2G Missense_Mutation p.G149E 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-FW-A3R5-06 9 99798917 99798917 G A CTSV Missense_Mutation p.S170L 0.22 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 9 99800311 99800311 G A CTSV Silent p.L5L 0.25 TCGA-FW-A3R5-06 9 99800315 99800315 G A CTSV Missense_Mutation p.S4L 0.26 tolerated(0.7) benign(0.005) TCGA-FW-A3R5-06 X 100105173 100105173 C T NOX1 Missense_Mutation p.R367K 0.32 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 X 100117458 100117458 C T NOX1 Silent p.R198R 0.62 TCGA-FW-A3R5-06 X 100125744 100125744 C T NOX1 Silent p.K35K 0.51 TCGA-FW-A3R5-06 X 100177947 100177947 C T XKRX Missense_Mutation p.E147K 0.54 tolerated(0.53) probably_damaging(0.995) TCGA-FW-A3R5-06 X 100349772 100349772 C T TMEM35 Missense_Mutation p.P111S 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-FW-A3R5-06 X 100395837 100395837 C T CENPI Intron 0.60 TCGA-FW-A3R5-06 X 100531409 100531409 C T TAF7L Missense_Mutation p.E353K 0.70 tolerated(0.13) benign(0.09) TCGA-FW-A3R5-06 X 100912609 100912609 G A ARMCX2 5'UTR 0.34 TCGA-FW-A3R5-06 X 100912626 100912626 G A ARMCX2 5'UTR 0.33 TCGA-FW-A3R5-06 X 101381827 101381827 G A TCEAL2 Missense_Mutation p.E9K 0.55 tolerated(0.08) benign(0.292) TCGA-FW-A3R5-06 X 101409099 101409099 C T BEX5 Missense_Mutation p.G47R 0.52 tolerated(1) benign(0.005) TCGA-FW-A3R5-06 X 101620165 101620165 G A NXF2B Silent p.F427F 0.25 TCGA-FW-A3R5-06 X 101620169 101620169 G A NXF2B Missense_Mutation p.P426L 0.27 deleterious(0.02) possibly_damaging(0.516) TCGA-FW-A3R5-06 X 101624628 101624628 C T NXF2B Missense_Mutation p.R88K 0.10 tolerated(0.16) benign(0.049) TCGA-FW-A3R5-06 X 101624781 101624781 C T NXF2B Intron 0.36 TCGA-FW-A3R5-06 X 10176100 10176100 C T CLCN4 Missense_Mutation p.P287S 0.40 deleterious(0) probably_damaging(0.913) TCGA-FW-A3R5-06 X 10176240 10176240 C T CLCN4 Silent p.F333F 0.55 TCGA-FW-A3R5-06 X 101768985 101768985 G A TMSB15A 3'UTR 0.57 TCGA-FW-A3R5-06 X 101970347 101970347 C T GPRASP2 Missense_Mutation p.P184S 0.62 tolerated(0.58) benign(0.018) TCGA-FW-A3R5-06 X 102193023 102193023 C T RAB40AL Silent p.I259I 0.53 TCGA-FW-A3R5-06 X 102318005 102318005 C T BEX1 Missense_Mutation p.M66I 0.65 tolerated(0.58) benign(0.012) TCGA-FW-A3R5-06 X 102334726 102334726 G A NXF3 Silent p.S375S 0.53 TCGA-FW-A3R5-06 X 102586646 102586646 G A TCEAL7 3'UTR 0.74 TCGA-FW-A3R5-06 X 103080737 103080737 G A RAB9B 5'UTR 0.58 TCGA-FW-A3R5-06 X 103267933 103267933 C T H2BFWT Silent p.R100R 0.38 TCGA-FW-A3R5-06 X 103268164 103268164 C T H2BFWT Missense_Mutation p.M23I 0.52 tolerated(0.36) benign(0.009) TCGA-FW-A3R5-06 X 103294884 103294884 C T H2BFM Missense_Mutation p.S114F 0.55 deleterious(0.03) probably_damaging(0.972) TCGA-FW-A3R5-06 X 103498964 103498964 C T ESX1 Missense_Mutation p.G126E 0.15 tolerated(0.24) probably_damaging(0.972) TCGA-FW-A3R5-06 X 104440363 104440363 G A IL1RAPL2 Missense_Mutation p.E97K 0.56 deleterious(0) possibly_damaging(0.861) TCGA-FW-A3R5-06 X 104512146 104512146 G A IL1RAPL2 Missense_Mutation p.E207K 0.43 tolerated(0.71) possibly_damaging(0.696) TCGA-FW-A3R5-06 X 104999239 104999239 C T IL1RAPL2 Missense_Mutation p.P421S 0.57 tolerated(0.48) benign(0.006) TCGA-FW-A3R5-06 X 105152872 105152872 C T NRK Silent p.A414A 0.50 TCGA-FW-A3R5-06 X 105153049 105153049 G A NRK Silent p.R473R 0.36 TCGA-FW-A3R5-06 X 105167206 105167206 G A NRK Missense_Mutation p.D904N 0.47 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 X 105168911 105168911 G A NRK Missense_Mutation p.R1068Q 0.62 tolerated(0.28) benign(0.024) TCGA-FW-A3R5-06 X 105280812 105280812 G A SERPINA7 Missense_Mutation p.L80F 0.48 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 X 105450029 105450029 G A MUM1L1 Missense_Mutation p.D202N 0.24 tolerated(0.13) possibly_damaging(0.856) TCGA-FW-A3R5-06 X 105450252 105450252 C T MUM1L1 Missense_Mutation p.S276L 0.43 tolerated(0.09) benign(0.009) TCGA-FW-A3R5-06 X 105450876 105450876 C T MUM1L1 Missense_Mutation p.S484F 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 105451060 105451060 G A MUM1L1 Missense_Mutation p.M545I 0.50 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 X 106039051 106039051 G A RNF128 3'UTR 0.75 TCGA-FW-A3R5-06 X 106396730 106396730 G A NUP62CL Missense_Mutation p.R117C 0.55 deleterious(0) benign(0.001) TCGA-FW-A3R5-06 X 106482183 106482183 C T PIH1D3 Missense_Mutation p.S154F 0.72 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 X 106769947 106769947 G A FRMPD3 Silent p.V76V 0.42 TCGA-FW-A3R5-06 X 106797653 106797653 C T FRMPD3 Silent p.L260L 0.27 TCGA-FW-A3R5-06 X 106841174 106841174 C T FRMPD3 Nonsense_Mutation p.Q722* 0.71 TCGA-FW-A3R5-06 X 106843718 106843718 C T FRMPD3 Missense_Mutation p.R850W 0.62 deleterious(0) probably_damaging(0.959) TCGA-FW-A3R5-06 X 106846214 106846214 G A FRMPD3 Missense_Mutation p.D1682N 0.53 deleterious(0.03) probably_damaging(0.994) TCGA-FW-A3R5-06 X 107224759 107224759 C T TEX13B Missense_Mutation p.A164T 0.55 tolerated(0.08) possibly_damaging(0.813) TCGA-FW-A3R5-06 X 107335041 107335041 G A ATG4A 5'UTR 0.25 TCGA-FW-A3R5-06 X 107393513 107393513 C T ATG4A Missense_Mutation p.P316S 0.17 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 107407872 107407872 C T COL4A6 Missense_Mutation p.D1344N 0.59 benign(0.045) TCGA-FW-A3R5-06 X 107417675 107417675 C T COL4A6 Missense_Mutation p.E1046K 0.51 benign(0.349) TCGA-FW-A3R5-06 X 107811990 107811990 G A COL4A5 Missense_Mutation p.G108E 0.17 unknown(0) TCGA-FW-A3R5-06 X 107844633 107844633 G A COL4A5 Silent p.G653G 0.39 TCGA-FW-A3R5-06 X 107858195 107858195 G A COL4A5 Missense_Mutation p.G817E 0.63 unknown(0) TCGA-FW-A3R5-06 X 107865087 107865087 G A COL4A5 Missense_Mutation p.G911E 0.33 unknown(0) TCGA-FW-A3R5-06 X 107868959 107868959 C T COL4A5 Missense_Mutation p.P1014L 0.24 unknown(0) TCGA-FW-A3R5-06 X 107923951 107923951 C T COL4A5 Missense_Mutation p.P1329S 0.62 benign(0.234) TCGA-FW-A3R5-06 X 107938511 107938511 G A COL4A5 Silent p.G1612G 0.16 TCGA-FW-A3R5-06 X 107978025 107978025 G A IRS4 Missense_Mutation p.S517L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 X 107979432 107979432 G A IRS4 Missense_Mutation p.S48L 0.45 tolerated_low_confidence(0.13) benign(0.06) TCGA-FW-A3R5-06 X 108719221 108719221 C T GUCY2F 5'UTR 0.34 TCGA-FW-A3R5-06 X 108867989 108867989 G A KCNE1L Silent p.L87L 0.16 TCGA-FW-A3R5-06 X 109695723 109695723 G A RGAG1 Silent p.T626T 0.62 TCGA-FW-A3R5-06 X 109696929 109696929 C T RGAG1 Silent p.S1028S 0.57 TCGA-FW-A3R5-06 X 109764975 109764975 C T TDGF1P3 RNA 0.41 TCGA-FW-A3R5-06 X 109924794 109924794 C T CHRDL1 Missense_Mutation p.E358K 0.65 tolerated(0.15) benign(0.341) TCGA-FW-A3R5-06 X 110439146 110439146 G A PAK3 Missense_Mutation p.G432E 0.58 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 110489988 110489988 C T CAPN6 Splice_Site p.X582_splice 0.69 TCGA-FW-A3R5-06 X 110494919 110494919 C T CAPN6 Missense_Mutation p.G251S 0.57 deleterious(0) probably_damaging(0.982) TCGA-FW-A3R5-06 X 110495667 110495667 G A CAPN6 Silent p.F189F 0.56 TCGA-FW-A3R5-06 X 110988108 110988108 C T ALG13 Missense_Mutation p.P970S 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-FW-A3R5-06 X 111078149 111078149 G A TRPC5 Silent p.A632A 0.64 TCGA-FW-A3R5-06 X 111090583 111090583 T G TRPC5 Missense_Mutation p.I487L 0.42 deleterious(0.03) benign(0.253) TCGA-FW-A3R5-06 X 111090596 111090596 G A TRPC5 Silent p.F482F 0.43 TCGA-FW-A3R5-06 X 111090607 111090607 C T TRPC5 Missense_Mutation p.E479K 0.39 deleterious(0) probably_damaging(0.977) TCGA-FW-A3R5-06 X 111097299 111097299 G A TRPC5 Silent p.A312A 0.60 TCGA-FW-A3R5-06 X 111195317 111195317 G A TRPC5 Missense_Mutation p.A111V 0.18 deleterious(0.01) possibly_damaging(0.836) TCGA-FW-A3R5-06 X 111195390 111195390 C T TRPC5 Missense_Mutation p.E87K 0.71 tolerated(0.08) probably_damaging(0.95) TCGA-FW-A3R5-06 X 111195665 111195665 G A TRPC5 5'UTR 0.37 TCGA-FW-A3R5-06 X 111698666 111698666 C T ZCCHC16 Missense_Mutation p.S237F 0.54 tolerated(0.08) benign(0.091) TCGA-FW-A3R5-06 X 111914257 111914257 C T LHFPL1 Missense_Mutation p.G121E 0.66 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 X 11197563 11197563 C T ARHGAP6 Missense_Mutation p.E447K 0.39 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 X 11308580 11308580 G A ARHGAP6 Intron 0.44 TCGA-FW-A3R5-06 X 11316365 11316365 C T AMELX Missense_Mutation p.P52S 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-FW-A3R5-06 X 114141190 114141190 G A HTR2C Missense_Mutation p.E197K 0.21 tolerated(0.27) benign(0.069) TCGA-FW-A3R5-06 X 114141204 114141204 C T HTR2C Silent p.F201F 0.57 TCGA-FW-A3R5-06 X 114537894 114537894 G A LUZP4 Missense_Mutation p.E85K 0.66 tolerated(0.42) benign(0.001) TCGA-FW-A3R5-06 X 114541218 114541218 G A LUZP4 Missense_Mutation p.R264K 0.53 tolerated(0.23) benign(0.001) TCGA-FW-A3R5-06 X 115304719 115304719 C T AGTR2 3'UTR 0.42 TCGA-FW-A3R5-06 X 115573981 115573981 C T SLC6A14 Missense_Mutation p.S158L 0.64 tolerated(0.06) benign(0.064) TCGA-FW-A3R5-06 X 115574931 115574931 G A SLC6A14 Missense_Mutation p.G210E 0.52 tolerated(0.28) possibly_damaging(0.836) TCGA-FW-A3R5-06 X 117043327 117043327 G A KLHL13 Missense_Mutation p.H438Y 0.50 deleterious(0.01) possibly_damaging(0.907) TCGA-FW-A3R5-06 X 117043328 117043328 G A KLHL13 Silent p.F437F 0.50 TCGA-FW-A3R5-06 X 117043518 117043518 G A KLHL13 Missense_Mutation p.S374L 0.59 tolerated(0.32) benign(0.016) TCGA-FW-A3R5-06 X 117053514 117053514 C T KLHL13 Silent p.L183L 0.62 TCGA-FW-A3R5-06 X 117079486 117079486 C T KLHL13 Missense_Mutation p.E54K 0.37 deleterious_low_confidence(0.04) benign(0.215) TCGA-FW-A3R5-06 X 117106777 117106777 C T KLHL13 Intron 0.62 TCGA-FW-A3R5-06 X 117566802 117566802 C T WDR44 Missense_Mutation p.P599L 0.53 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 117788609 117788609 C T DOCK11 Silent p.I1580I 0.66 TCGA-FW-A3R5-06 X 117960368 117960368 G A ZCCHC12 Silent p.R387R 0.37 TCGA-FW-A3R5-06 X 118145875 118145875 C T LONRF3 Missense_Mutation p.R584C 0.57 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 118221228 118221228 C T KIAA1210 Missense_Mutation p.R1322K 0.24 tolerated(0.75) benign(0.019) TCGA-FW-A3R5-06 X 118228010 118228010 C T KIAA1210 Missense_Mutation p.G439E 0.51 tolerated(1) benign(0) TCGA-FW-A3R5-06 X 118230475 118230475 C T KIAA1210 Silent p.K416K 0.56 TCGA-FW-A3R5-06 X 118230488 118230488 G A KIAA1210 Missense_Mutation p.P412L 0.50 deleterious(0) possibly_damaging(0.507) TCGA-FW-A3R5-06 X 119249615 119249615 C T RHOXF1 Missense_Mutation p.G53D 0.56 tolerated(0.94) benign(0.097) TCGA-FW-A3R5-06 X 119249751 119249751 C T RHOXF1 Missense_Mutation p.D8N 0.19 tolerated(0.22) benign(0) TCGA-FW-A3R5-06 X 119293315 119293315 C T RHOXF2 Silent p.F158F 0.60 TCGA-FW-A3R5-06 X 119388433 119388433 C T ZBTB33 Missense_Mutation p.S388F 0.52 tolerated(0.07) possibly_damaging(0.553) TCGA-FW-A3R5-06 X 119419520 119419520 G A TMEM255A Missense_Mutation p.S152F 0.43 tolerated(0.13) benign(0.158) TCGA-FW-A3R5-06 X 119495970 119495970 C T ATP1B4 5'UTR 0.15 TCGA-FW-A3R5-06 X 119500593 119500593 C T ATP1B4 Silent p.L93L 0.61 TCGA-FW-A3R5-06 X 119510247 119510247 C T ATP1B4 Missense_Mutation p.R258C 0.72 tolerated(0.14) possibly_damaging(0.697) TCGA-FW-A3R5-06 X 120007815 120007815 C T CT47B1 Missense_Mutation p.E279K 0.57 tolerated(0.1) unknown(0) TCGA-FW-A3R5-06 X 120009333 120009333 C T CT47B1 Silent p.E64E 0.40 TCGA-FW-A3R5-06 X 120094383 120094383 C T CT47A6 Missense_Mutation p.A234T 0.99 deleterious(0.04) benign(0.01) TCGA-FW-A3R5-06 X 120094389 120094389 C T CT47A6 Missense_Mutation p.E232K 0.96 tolerated(0.25) possibly_damaging(0.486) TCGA-FW-A3R5-06 X 122387215 122387215 G A GRIA3 Missense_Mutation p.M110I 0.59 tolerated(0.07) benign(0.069) TCGA-FW-A3R5-06 X 122532572 122532572 G A GRIA3 Missense_Mutation p.R333Q 0.60 deleterious(0.03) benign(0.057) TCGA-FW-A3R5-06 X 122536928 122536928 G A GRIA3 Missense_Mutation p.M388I 0.50 tolerated(0.09) benign(0.242) TCGA-FW-A3R5-06 X 122551357 122551357 G A GRIA3 Silent p.K535K 0.58 TCGA-FW-A3R5-06 X 122551490 122551490 G A GRIA3 Missense_Mutation p.E580K 0.20 tolerated(0.06) benign(0.401) TCGA-FW-A3R5-06 X 122759828 122759828 G A THOC2 Missense_Mutation p.R998C 0.48 deleterious(0) possibly_damaging(0.846) TCGA-FW-A3R5-06 X 122759917 122759917 G A THOC2 Missense_Mutation p.S968F 0.50 deleterious(0) probably_damaging(0.932) TCGA-FW-A3R5-06 X 123514349 123514349 G A TENM1 3'UTR 0.54 TCGA-FW-A3R5-06 X 123515039 123515039 C T TENM1 Missense_Mutation p.G2516R 0.59 tolerated(0.38) benign(0.001) TCGA-FW-A3R5-06 X 123519851 123519851 G A TENM1 Silent p.L1918L 0.56 TCGA-FW-A3R5-06 X 123540242 123540242 C T TENM1 Missense_Mutation p.D1694N 0.33 tolerated(0.1) benign(0.039) TCGA-FW-A3R5-06 X 123556375 123556375 G A TENM1 Silent p.I1406I 0.50 TCGA-FW-A3R5-06 X 123615708 123615708 C T TENM1 Missense_Mutation p.E1275K 0.21 tolerated(0.73) benign(0.029) TCGA-FW-A3R5-06 X 123695634 123695634 C T TENM1 Missense_Mutation p.R774Q 0.57 tolerated(0.28) benign(0.014) TCGA-FW-A3R5-06 X 123779149 123779149 C T TENM1 Missense_Mutation p.E574K 0.60 tolerated(0.85) benign(0.134) TCGA-FW-A3R5-06 X 124097411 124097411 C T TENM1 Silent p.R64R 0.15 TCGA-FW-A3R5-06 X 124097438 124097438 C T TENM1 Missense_Mutation p.M55I 0.55 deleterious_low_confidence(0.02) benign(0.016) TCGA-FW-A3R5-06 X 125685672 125685672 C T DCAF12L1 Missense_Mutation p.R307Q 0.57 tolerated(0.72) benign(0.052) TCGA-FW-A3R5-06 X 127185851 127185851 G A ACTRT1 Missense_Mutation p.S112F 0.57 deleterious(0) probably_damaging(0.951) TCGA-FW-A3R5-06 X 127186106 127186106 C T ACTRT1 Missense_Mutation p.G27E 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 X 12736281 12736281 G A FRMPD4 Silent p.G1112G 0.63 TCGA-FW-A3R5-06 X 128896701 128896701 G A XPNPEP2 Silent p.G565G 0.60 TCGA-FW-A3R5-06 X 128940198 128940198 A C ZDHHC9 3'UTR 0.52 TCGA-FW-A3R5-06 X 129148439 129148439 C T BCORL1 Missense_Mutation p.P564L 0.33 benign(0.164) TCGA-FW-A3R5-06 X 129149928 129149928 C T BCORL1 Silent p.F1060F 0.61 TCGA-FW-A3R5-06 X 129205174 129205174 G A ELF4 Missense_Mutation p.A217V 0.61 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 129474157 129474157 C T SLC25A14 5'UTR 0.38 TCGA-FW-A3R5-06 X 129546525 129546525 C T RBMX2 Silent p.L224L 0.71 TCGA-FW-A3R5-06 X 129629752 129629752 G A RP1-274L7.1 Intron 0.32 TCGA-FW-A3R5-06 X 130218274 130218274 C A ARHGAP36 Missense_Mutation p.P214Q 0.10 tolerated(0.38) benign(0.052) TCGA-FW-A3R5-06 X 130218305 130218305 G A ARHGAP36 Silent p.R224R 0.66 TCGA-FW-A3R5-06 X 130218616 130218616 G A ARHGAP36 Silent p.G255G 0.52 TCGA-FW-A3R5-06 X 130220636 130220636 G A ARHGAP36 Missense_Mutation p.E495K 0.51 deleterious(0.03) benign(0.193) TCGA-FW-A3R5-06 X 130222677 130222677 C T ARHGAP36 Missense_Mutation p.P521L 0.62 tolerated(0.08) benign(0.025) TCGA-FW-A3R5-06 X 130407850 130407850 C T IGSF1 Missense_Mutation p.E1316K 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.661) TCGA-FW-A3R5-06 X 130408766 130408766 G A IGSF1 Silent p.P1191P 0.60 TCGA-FW-A3R5-06 X 130409573 130409573 C T IGSF1 Silent p.G1026G 0.17 TCGA-FW-A3R5-06 X 130409647 130409647 C T IGSF1 Missense_Mutation p.G1002R 0.61 deleterious(0.04) probably_damaging(0.927) TCGA-FW-A3R5-06 X 130419274 130419274 G A IGSF1 Silent p.A182A 0.48 TCGA-FW-A3R5-06 X 130419851 130419851 G A IGSF1 Missense_Mutation p.S90L 0.52 tolerated(0.07) probably_damaging(0.999) TCGA-FW-A3R5-06 X 130419919 130419919 C T IGSF1 Silent p.K67K 0.47 TCGA-FW-A3R5-06 X 131157398 131157398 G A MST4 5'UTR 0.33 TCGA-FW-A3R5-06 X 131202542 131202542 G A MST4 Missense_Mutation p.G181E 0.36 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 X 131206347 131206347 C T MST4 Silent p.T328T 0.32 TCGA-FW-A3R5-06 X 131231365 131231365 C T FRMD7 Silent p.K71K 0.14 TCGA-FW-A3R5-06 X 131234714 131234714 G A FRMD7 Silent p.L30L 0.60 TCGA-FW-A3R5-06 X 1321317 1321317 G A CRLF2 Silent p.L146L 0.16 TCGA-FW-A3R5-06 X 132160463 132160463 C T USP26 Missense_Mutation p.D596N 0.55 tolerated(0.1) benign(0.199) TCGA-FW-A3R5-06 X 132160519 132160519 C T USP26 Missense_Mutation p.R577Q 0.62 tolerated(1) benign(0.01) TCGA-FW-A3R5-06 X 1325381 1325381 G A CRLF2 Silent p.S98S 0.14 TCGA-FW-A3R5-06 X 1325382 1325382 G A CRLF2 Missense_Mutation p.S98F 0.15 deleterious(0.03) probably_damaging(0.975) TCGA-FW-A3R5-06 X 132826487 132826487 A G GPC3 Missense_Mutation p.F424S 0.58 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 132888043 132888043 C T GPC3 Missense_Mutation p.M166I 0.60 tolerated(0.28) benign(0.342) TCGA-FW-A3R5-06 X 133119350 133119350 G A GPC3 Nonsense_Mutation p.Q43* 0.50 TCGA-FW-A3R5-06 X 1331458 1331458 C T CRLF2 Missense_Mutation p.G24R 0.17 tolerated(0.5) benign(0.115) TCGA-FW-A3R5-06 X 133303440 133303440 C T MIR363 RNA 0.40 TCGA-FW-A3R5-06 X 133700714 133700714 C T PLAC1 5'UTR 0.54 TCGA-FW-A3R5-06 X 133981471 133981471 C T FAM122C Intron 0.49 TCGA-FW-A3R5-06 X 134947909 134947909 C T CT45A5 Missense_Mutation p.R139Q 0.58 tolerated(0.27) benign(0.002) TCGA-FW-A3R5-06 X 134990687 134990687 G A SAGE1 Missense_Mutation p.R451Q 0.52 tolerated(0.14) benign(0.016) TCGA-FW-A3R5-06 X 134991144 134991144 C T SAGE1 Silent p.S521S 0.64 TCGA-FW-A3R5-06 X 134992588 134992588 C T SAGE1 Missense_Mutation p.H627Y 0.34 tolerated(0.05) probably_damaging(0.993) TCGA-FW-A3R5-06 X 134993876 134993876 C T SAGE1 Missense_Mutation p.S762F 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-FW-A3R5-06 X 135427031 135427031 C T GPR112 Missense_Mutation p.S389L 0.60 tolerated(0.25) benign(0.018) TCGA-FW-A3R5-06 X 135427318 135427318 C T GPR112 Missense_Mutation p.P485S 0.39 tolerated(0.11) benign(0.018) TCGA-FW-A3R5-06 X 135427572 135427572 G A GPR112 Silent p.E569E 0.44 TCGA-FW-A3R5-06 X 135428793 135428793 C T GPR112 Silent p.T976T 0.12 TCGA-FW-A3R5-06 X 135428894 135428894 C T GPR112 Missense_Mutation p.P1010L 0.59 tolerated(0.06) benign(0.014) TCGA-FW-A3R5-06 X 135429948 135429948 G A GPR112 Silent p.G1361G 0.16 TCGA-FW-A3R5-06 X 135430251 135430251 C T GPR112 Silent p.F1462F 0.59 TCGA-FW-A3R5-06 X 135430764 135430764 G A GPR112 Missense_Mutation p.M1633I 0.55 tolerated(0.29) benign(0.005) TCGA-FW-A3R5-06 X 135431120 135431120 C T GPR112 Missense_Mutation p.S1752L 0.39 tolerated(0.09) benign(0.018) TCGA-FW-A3R5-06 X 135431686 135431686 C T GPR112 Missense_Mutation p.P1941S 0.47 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 X 135441522 135441522 G A GPR112 Missense_Mutation p.S2351N 0.63 tolerated(0.3) benign(0.001) TCGA-FW-A3R5-06 X 135445633 135445633 C T GPR112 Intron 0.19 TCGA-FW-A3R5-06 X 135480069 135480069 G A GPR112 Silent p.V2738V 0.34 TCGA-FW-A3R5-06 X 135482015 135482015 G A GPR112 Missense_Mutation p.R2772Q 0.55 deleterious(0.04) probably_damaging(0.977) TCGA-FW-A3R5-06 X 135485428 135485428 C T GPR112 Silent p.I2867I 0.23 TCGA-FW-A3R5-06 X 135574322 135574322 C T BRS3 Missense_Mutation p.L330F 0.60 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 135618328 135618328 G A VGLL1 Missense_Mutation p.S50N 0.38 tolerated(0.06) probably_damaging(0.941) TCGA-FW-A3R5-06 X 135618348 135618348 G A VGLL1 Missense_Mutation p.E57K 0.64 tolerated(0.67) benign(0.021) TCGA-FW-A3R5-06 X 135732492 135732492 G A CD40LG Missense_Mutation p.G75E 0.67 tolerated(0.1) benign(0.037) TCGA-FW-A3R5-06 X 135758808 135758808 C T ARHGEF6 Silent p.S640S 0.69 TCGA-FW-A3R5-06 X 13613031 13613031 G A EGFL6 Silent p.G88G 0.55 TCGA-FW-A3R5-06 X 136649320 136649320 C T ZIC3 Missense_Mutation p.P157L 0.72 deleterious(0.03) probably_damaging(0.996) TCGA-FW-A3R5-06 X 138633243 138633243 T A F9 Silent p.V181V 0.62 TCGA-FW-A3R5-06 X 138633391 138633391 G A F9 Missense_Mutation p.E231K 0.64 tolerated(0.53) benign(0.008) TCGA-FW-A3R5-06 X 138687872 138687872 C T MCF2 Silent p.L595L 0.56 TCGA-FW-A3R5-06 X 138697051 138697051 G A MCF2 Missense_Mutation p.S511L 0.48 deleterious(0.02) benign(0.184) TCGA-FW-A3R5-06 X 1407740 1407740 C T CSF2RA Silent p.A144A 0.16 TCGA-FW-A3R5-06 X 140785651 140785651 C T SPANXD Missense_Mutation p.E89K 0.53 deleterious_low_confidence(0.04) benign(0.004) TCGA-FW-A3R5-06 X 140926196 140926196 C T MAGEC3 Missense_Mutation p.S32F 0.61 deleterious_low_confidence(0) benign(0.193) TCGA-FW-A3R5-06 X 140969396 140969396 G A MAGEC3 Silent p.L241L 0.55 TCGA-FW-A3R5-06 X 140984946 140984946 C T MAGEC3 Missense_Mutation p.L468F 0.57 deleterious(0) possibly_damaging(0.739) TCGA-FW-A3R5-06 X 140985474 140985474 C T MAGEC3 Silent p.I596I 0.61 TCGA-FW-A3R5-06 X 140992766 140992766 G A MAGEC1 5'UTR 0.50 TCGA-FW-A3R5-06 X 140993545 140993545 C T MAGEC1 Missense_Mutation p.P119S 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-FW-A3R5-06 X 140994117 140994117 C T MAGEC1 Silent p.S309S 0.47 TCGA-FW-A3R5-06 X 140994216 140994216 G A MAGEC1 Missense_Mutation p.M342I 0.55 tolerated_low_confidence(0.18) benign(0) TCGA-FW-A3R5-06 X 140994357 140994357 C T MAGEC1 Silent p.F389F 0.50 TCGA-FW-A3R5-06 X 140994400 140994400 C T MAGEC1 Missense_Mutation p.P404S 0.54 tolerated_low_confidence(0.09) benign(0) TCGA-FW-A3R5-06 X 140994727 140994727 C T MAGEC1 Missense_Mutation p.P513S 0.58 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-FW-A3R5-06 X 140994983 140994983 G A MAGEC1 Missense_Mutation p.S598N 0.57 deleterious_low_confidence(0) benign(0.213) TCGA-FW-A3R5-06 X 140995378 140995378 C T MAGEC1 Missense_Mutation p.P730S 0.47 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-FW-A3R5-06 X 140995456 140995456 C T MAGEC1 Missense_Mutation p.P756S 0.49 tolerated_low_confidence(0.84) possibly_damaging(0.641) TCGA-FW-A3R5-06 X 140995641 140995641 C T MAGEC1 Silent p.F817F 0.39 TCGA-FW-A3R5-06 X 140995778 140995778 C T MAGEC1 Missense_Mutation p.S863L 0.63 tolerated_low_confidence(0.19) unknown(0) TCGA-FW-A3R5-06 X 140995889 140995889 G A MAGEC1 Missense_Mutation p.S900N 0.50 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 X 140995902 140995902 C T MAGEC1 Silent p.F904F 0.52 TCGA-FW-A3R5-06 X 140995918 140995918 G A MAGEC1 Missense_Mutation p.E910K 0.53 tolerated(0.08) unknown(0) TCGA-FW-A3R5-06 X 140996099 140996099 C T MAGEC1 Missense_Mutation p.P970L 0.55 deleterious(0) unknown(0) TCGA-FW-A3R5-06 X 140996416 140996416 C T MAGEC1 Missense_Mutation p.H1076Y 0.15 tolerated(0.06) unknown(0) TCGA-FW-A3R5-06 X 140996466 140996466 G A MAGEC1 Silent p.K1092K 0.57 TCGA-FW-A3R5-06 X 141290858 141290858 G A MAGEC2 Missense_Mutation p.H306Y 0.49 tolerated(0.15) probably_damaging(0.985) TCGA-FW-A3R5-06 X 141291460 141291460 G A MAGEC2 Missense_Mutation p.S105F 0.50 tolerated(0.13) probably_damaging(0.951) TCGA-FW-A3R5-06 X 142596707 142596707 G A SPANXN3 Silent p.S121S 0.63 TCGA-FW-A3R5-06 X 142716446 142716446 C T SLITRK4 Missense_Mutation p.V827I 0.60 deleterious(0) probably_damaging(0.956) TCGA-FW-A3R5-06 X 142717018 142717018 A G SLITRK4 Missense_Mutation p.F636S 0.55 tolerated(0.19) probably_damaging(0.986) TCGA-FW-A3R5-06 X 142717102 142717102 C T SLITRK4 Missense_Mutation p.R608Q 0.52 tolerated(0.59) benign(0.062) TCGA-FW-A3R5-06 X 142795252 142795252 G A SPANXN2 Silent p.D142D 0.13 TCGA-FW-A3R5-06 X 142795591 142795591 C T SPANXN2 Silent p.E29E 0.48 TCGA-FW-A3R5-06 X 142795593 142795593 C T SPANXN2 Missense_Mutation p.E29K 0.50 tolerated_low_confidence(0.12) possibly_damaging(0.807) TCGA-FW-A3R5-06 X 1428303 1428303 G A CSF2RA Nonsense_Mutation p.W412* 0.34 TCGA-FW-A3R5-06 X 142967526 142967526 G A UBE2NL Silent p.S108S 0.59 TCGA-FW-A3R5-06 X 144329145 144329145 G A SPANXN1 Silent p.R13R 0.60 TCGA-FW-A3R5-06 X 147026416 147026416 C T FMR1 Missense_Mutation p.S500F 0.14 deleterious(0) probably_damaging(0.958) TCGA-FW-A3R5-06 X 147062951 147062951 G A FMR1NB Missense_Mutation p.G10E 0.29 tolerated(0.1) benign(0.009) TCGA-FW-A3R5-06 X 147743900 147743900 G A AFF2 Missense_Mutation p.E218K 0.64 tolerated(0.29) possibly_damaging(0.492) TCGA-FW-A3R5-06 X 147985774 147985774 G A AFF2 Silent p.R461R 0.65 TCGA-FW-A3R5-06 X 148037913 148037913 C T AFF2 Missense_Mutation p.P780S 0.38 tolerated(0.41) probably_damaging(0.999) TCGA-FW-A3R5-06 X 148055131 148055131 T A AFF2 Missense_Mutation p.L1133H 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 148628589 148628589 C T CXorf40A 3'UTR 0.61 TCGA-FW-A3R5-06 X 148796219 148796219 G A MAGEA11 Missense_Mutation p.D59N 0.81 deleterious_low_confidence(0.02) possibly_damaging(0.811) TCGA-FW-A3R5-06 X 148798216 148798216 G A MAGEA11 Missense_Mutation p.R357K 0.56 tolerated(1) benign(0.001) TCGA-FW-A3R5-06 X 1499956 1499956 A T IL3RA Missense_Mutation p.M341L 0.32 tolerated(0.23) benign(0.041) TCGA-FW-A3R5-06 X 150349343 150349343 G A GPR50 Missense_Mutation p.G430S 0.61 tolerated_low_confidence(0.21) possibly_damaging(0.894) TCGA-FW-A3R5-06 X 150773146 150773146 G A PASD1 Silent p.R19R 0.62 TCGA-FW-A3R5-06 X 150817106 150817106 G A PASD1 Missense_Mutation p.G217R 0.62 tolerated(0.89) benign(0.062) TCGA-FW-A3R5-06 X 150828306 150828306 C T PASD1 Missense_Mutation p.P280L 0.39 tolerated(0.1) benign(0.029) TCGA-FW-A3R5-06 X 150840204 150840204 C T PASD1 Missense_Mutation p.L464F 0.49 tolerated(0.7) benign(0.011) TCGA-FW-A3R5-06 X 150840933 150840933 G A PASD1 Silent p.L572L 0.19 TCGA-FW-A3R5-06 X 150842649 150842649 C T PASD1 Silent p.T722T 0.40 TCGA-FW-A3R5-06 X 150842658 150842658 G A PASD1 Silent p.Q725Q 0.15 TCGA-FW-A3R5-06 X 150844496 150844496 G A PASD1 Missense_Mutation p.G735R 0.57 tolerated_low_confidence(0.08) probably_damaging(0.979) TCGA-FW-A3R5-06 X 150868515 150868515 C T PRRG3 Missense_Mutation p.R19C 0.61 deleterious(0) possibly_damaging(0.8) TCGA-FW-A3R5-06 X 150868557 150868557 G A PRRG3 Missense_Mutation p.E33K 0.58 deleterious(0) probably_damaging(0.979) TCGA-FW-A3R5-06 X 150869196 150869196 C T PRRG3 Silent p.L129L 0.63 TCGA-FW-A3R5-06 X 150891136 150891136 G A FATE1 Missense_Mutation p.E153K 0.61 deleterious(0.01) benign(0.412) TCGA-FW-A3R5-06 X 150891177 150891177 C T FATE1 Silent p.I166I 0.60 TCGA-FW-A3R5-06 X 150907031 150907031 G A CNGA2 Missense_Mutation p.A26T 0.56 tolerated_low_confidence(1) benign(0.007) TCGA-FW-A3R5-06 X 151092435 151092435 C T MAGEA4 Missense_Mutation p.P100L 0.35 deleterious(0.01) benign(0.022) TCGA-FW-A3R5-06 X 151092491 151092491 C T MAGEA4 Missense_Mutation p.H119Y 0.50 deleterious(0.01) possibly_damaging(0.834) TCGA-FW-A3R5-06 X 151092793 151092793 G A MAGEA4 Silent p.E219E 0.50 TCGA-FW-A3R5-06 X 151092811 151092811 G A MAGEA4 Silent p.E225E 0.51 TCGA-FW-A3R5-06 X 151093031 151093031 C T MAGEA4 Missense_Mutation p.R299C 0.58 deleterious(0.02) benign(0.004) TCGA-FW-A3R5-06 X 151093166 151093166 C T MAGEA4 3'UTR 0.50 TCGA-FW-A3R5-06 X 151123529 151123529 G A GABRE Missense_Mutation p.R389C 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 X 151123530 151123530 G A GABRE Silent p.A388A 0.33 TCGA-FW-A3R5-06 X 151128379 151128379 G A GABRE Missense_Mutation p.S239F 0.46 deleterious(0) possibly_damaging(0.697) TCGA-FW-A3R5-06 X 151283670 151283670 C T RP11-1007I13.4 RNA 0.15 TCGA-FW-A3R5-06 X 151284190 151284190 G A RP11-1007I13.4 RNA 0.52 TCGA-FW-A3R5-06 X 151303861 151303861 C T MAGEA10 Missense_Mutation p.D78N 0.57 tolerated(0.07) benign(0.139) TCGA-FW-A3R5-06 X 151303874 151303874 C T MAGEA10 Silent p.E73E 0.55 TCGA-FW-A3R5-06 X 151303883 151303883 G A MAGEA10 Silent p.T70T 0.58 TCGA-FW-A3R5-06 X 151303925 151303925 G A MAGEA10 Silent p.S56S 0.38 TCGA-FW-A3R5-06 X 151304045 151304045 A G MAGEA10 Silent p.L16L 0.48 TCGA-FW-A3R5-06 X 151304071 151304071 G A MAGEA10 Nonsense_Mutation p.Q8* 0.48 TCGA-FW-A3R5-06 X 151376574 151376574 C T GABRA3 Missense_Mutation p.G226E 0.60 tolerated(0.2) benign(0.123) TCGA-FW-A3R5-06 X 151376575 151376575 C T GABRA3 Missense_Mutation p.G226R 0.61 deleterious(0.01) benign(0.178) TCGA-FW-A3R5-06 X 151818293 151818293 C T GABRQ Silent p.F233F 0.40 TCGA-FW-A3R5-06 X 151821814 151821814 C T GABRQ 3'UTR 0.46 TCGA-FW-A3R5-06 X 151900098 151900098 C T MAGEA12 Missense_Mutation p.E235K 0.55 tolerated(0.71) possibly_damaging(0.47) TCGA-FW-A3R5-06 X 151900161 151900161 C T MAGEA12 Missense_Mutation p.D214N 0.55 tolerated(1) benign(0.009) TCGA-FW-A3R5-06 X 151900372 151900372 G A MAGEA12 Silent p.F143F 0.60 TCGA-FW-A3R5-06 X 151935259 151935259 G A MAGEA3 Missense_Mutation p.P303L 0.13 tolerated(0.71) benign(0.001) TCGA-FW-A3R5-06 X 151935344 151935344 G A MAGEA3 Missense_Mutation p.P275S 0.58 deleterious(0.03) benign(0.431) TCGA-FW-A3R5-06 X 151936015 151936015 C T MAGEA3 Missense_Mutation p.G51E 0.29 tolerated(1) benign(0.006) TCGA-FW-A3R5-06 X 152034497 152034497 C T NSDHL Silent p.F226F 0.52 TCGA-FW-A3R5-06 X 152159171 152159171 G A PNMA5 Silent p.L324L 0.47 TCGA-FW-A3R5-06 X 152159384 152159384 C T PNMA5 Silent p.P253P 0.61 TCGA-FW-A3R5-06 X 152728076 152728076 G A HAUS7 Missense_Mutation p.L126F 0.50 deleterious(0) probably_damaging(0.989) TCGA-FW-A3R5-06 X 152770723 152770723 C T BGN Missense_Mutation p.S89F 0.58 deleterious(0) probably_damaging(0.938) TCGA-FW-A3R5-06 X 152818521 152818521 G A ATP2B3 Missense_Mutation p.E618K 0.64 tolerated(0.2) benign(0.202) TCGA-FW-A3R5-06 X 153072226 153072226 C T PDZD4 Missense_Mutation p.E153K 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 15307707 15307707 C T ASB11 Missense_Mutation p.E192K 0.57 tolerated(0.15) probably_damaging(0.999) TCGA-FW-A3R5-06 X 153133547 153133547 G A L1CAM Silent p.I578I 0.17 TCGA-FW-A3R5-06 X 153174589 153174589 G A ARHGAP4 Missense_Mutation p.P888S 0.66 tolerated(0.11) benign(0.005) TCGA-FW-A3R5-06 X 153217341 153217341 G A HCFC1 Silent p.A1737A 0.72 TCGA-FW-A3R5-06 X 153221832 153221832 G A HCFC1 Missense_Mutation p.T889I 0.16 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-FW-A3R5-06 X 153296314 153296314 G A MECP2 Missense_Mutation p.P334L 0.61 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A3R5-06 X 153541044 153541044 C T TKTL1 Missense_Mutation p.P262S 0.58 tolerated(0.13) benign(0.009) TCGA-FW-A3R5-06 X 153585856 153585856 G A FLNA Missense_Mutation p.P1631S 0.54 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 X 153696708 153696708 C T PLXNA3 Silent p.F1342F 0.58 TCGA-FW-A3R5-06 X 153761272 153761272 G A G6PD Silent p.P342P 0.12 TCGA-FW-A3R5-06 X 15376196 15376196 G A FIGF Nonsense_Mutation p.R141* 0.52 TCGA-FW-A3R5-06 X 153880692 153880692 C T CTAG2 Silent p.E161E 0.51 TCGA-FW-A3R5-06 X 153880896 153880896 C T CTAG2 Silent p.T93T 0.56 TCGA-FW-A3R5-06 X 153881735 153881735 C T CTAG2 Missense_Mutation p.G19R 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3R5-06 X 154124377 154124377 C T F8 Missense_Mutation p.R2135Q 0.17 deleterious(0.03) benign(0.251) TCGA-FW-A3R5-06 X 154158558 154158558 C T F8 Silent p.V1169V 0.63 TCGA-FW-A3R5-06 X 155003473 155003473 C T SPRY3 5'UTR 0.28 TCGA-FW-A3R5-06 X 155004272 155004272 C T SPRY3 Silent p.L247L 0.31 TCGA-FW-A3R5-06 X 155119159 155119159 G A VAMP7 Silent p.R10R 0.29 TCGA-FW-A3R5-06 X 155127867 155127867 C T VAMP7 Missense_Mutation p.P99L 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3R5-06 X 155171641 155171641 G A VAMP7 Silent p.K207K 0.18 TCGA-FW-A3R5-06 X 155171642 155171642 G A VAMP7 Missense_Mutation p.D208N 0.18 unknown(0) TCGA-FW-A3R5-06 X 155227312 155227312 C T IL9R 5'UTR 0.28 TCGA-FW-A3R5-06 X 155235133 155235133 C T IL9R Missense_Mutation p.P257L 0.23 deleterious(0.02) possibly_damaging(0.723) TCGA-FW-A3R5-06 X 15549483 15549483 G A BMX Silent p.S324S 0.36 TCGA-FW-A3R5-06 X 15657812 15657812 G A TMEM27 Missense_Mutation p.P129S 0.51 tolerated(0.48) benign(0.221) TCGA-FW-A3R5-06 X 1584232 1584232 G A P2RY8 3'UTR 0.21 TCGA-FW-A3R5-06 X 1584235 1584235 G A P2RY8 3'UTR 0.40 TCGA-FW-A3R5-06 X 1584424 1584424 C T P2RY8 Missense_Mutation p.G343E 0.28 tolerated_low_confidence(0.53) benign(0.274) TCGA-FW-A3R5-06 X 1584754 1584754 C T P2RY8 Missense_Mutation p.R233K 0.37 tolerated(0.61) benign(0.038) TCGA-FW-A3R5-06 X 1584834 1584834 G A P2RY8 Silent p.F206F 0.25 TCGA-FW-A3R5-06 X 1584900 1584900 G A P2RY8 Silent p.L184L 0.23 TCGA-FW-A3R5-06 X 1585101 1585101 G A P2RY8 Silent p.I117I 0.23 TCGA-FW-A3R5-06 X 1585389 1585389 C T P2RY8 Silent p.A21A 0.15 TCGA-FW-A3R5-06 X 16168605 16168605 C T GRPR Silent p.A197A 0.62 TCGA-FW-A3R5-06 X 16170511 16170511 C T GRPR Missense_Mutation p.H300Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 17165669 17165669 G A REPS2 3'UTR 0.62 TCGA-FW-A3R5-06 X 1719914 1719914 C T AKAP17A Silent p.A505A 0.40 TCGA-FW-A3R5-06 X 1734100 1734100 C T ASMT Missense_Mutation p.S3F 0.33 deleterious(0.03) benign(0.202) TCGA-FW-A3R5-06 X 1742181 1742181 G A ASMT Silent p.L73L 0.22 TCGA-FW-A3R5-06 X 1743171 1743171 G A ASMT Missense_Mutation p.R85Q 0.28 tolerated(0.59) benign(0.004) TCGA-FW-A3R5-06 X 17743770 17743770 G A NHS Missense_Mutation p.G494E 0.33 tolerated(0.27) benign(0.018) TCGA-FW-A3R5-06 X 17819535 17819535 C T RAI2 Missense_Mutation p.G199E 0.46 deleterious(0.01) unknown(0) TCGA-FW-A3R5-06 X 17819929 17819929 C T RAI2 Missense_Mutation p.G68S 0.48 deleterious(0.02) probably_damaging(0.931) TCGA-FW-A3R5-06 X 18192171 18192171 C T BEND2 Missense_Mutation p.E654K 0.61 tolerated(0.11) benign(0.316) TCGA-FW-A3R5-06 X 18643341 18643341 G A CDKL5 Missense_Mutation p.E824K 0.61 deleterious_low_confidence(0.04) benign(0.305) TCGA-FW-A3R5-06 X 19025350 19025350 C T GPR64 Intron 0.23 TCGA-FW-A3R5-06 X 19377730 19377730 C T PDHA1 Missense_Mutation p.R416C 0.59 deleterious(0.02) benign(0.321) TCGA-FW-A3R5-06 X 19410551 19410551 C T MAP3K15 Missense_Mutation p.M745I 0.65 tolerated(0.12) benign(0.02) TCGA-FW-A3R5-06 X 19564139 19564139 G A SH3KBP1 Silent p.D508D 0.51 TCGA-FW-A3R5-06 X 20034416 20034416 C T MAP7D2 Silent p.K480K 0.56 TCGA-FW-A3R5-06 X 20081589 20081589 C T MAP7D2 Silent p.E105E 0.61 TCGA-FW-A3R5-06 X 21627648 21627648 G A CNKSR2 Missense_Mutation p.D869N 0.62 tolerated(0.33) benign(0.009) TCGA-FW-A3R5-06 X 21863445 21863445 C T MBTPS2 Silent p.S127S 0.60 TCGA-FW-A3R5-06 X 22051015 22051015 C T PHEX 5'UTR 0.57 TCGA-FW-A3R5-06 X 22112104 22112104 C T PHEX Missense_Mutation p.R246W 0.66 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 22263514 22263514 C T PHEX Missense_Mutation p.P712L 0.15 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 22292286 22292286 G A ZNF645 Nonsense_Mutation p.W393* 0.38 TCGA-FW-A3R5-06 X 23019033 23019033 C T DDX53 Nonsense_Mutation p.Q287* 0.51 TCGA-FW-A3R5-06 X 23019757 23019757 C T DDX53 Missense_Mutation p.S528F 0.57 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 X 23020050 23020050 G A DDX53 Missense_Mutation p.E626K 0.54 tolerated_low_confidence(1) benign(0.004) TCGA-FW-A3R5-06 X 23398129 23398129 G A PTCHD1 Missense_Mutation p.R258K 0.64 tolerated(0.89) benign(0) TCGA-FW-A3R5-06 X 23410682 23410682 C T PTCHD1 Silent p.S349S 0.74 TCGA-FW-A3R5-06 X 23410745 23410745 C T PTCHD1 Silent p.D370D 0.27 TCGA-FW-A3R5-06 X 23410955 23410955 C T PTCHD1 Silent p.F440F 0.66 TCGA-FW-A3R5-06 X 23411138 23411138 G A PTCHD1 Silent p.K501K 0.58 TCGA-FW-A3R5-06 X 23411681 23411681 C T PTCHD1 Silent p.F682F 0.66 TCGA-FW-A3R5-06 X 23411707 23411707 G A PTCHD1 Missense_Mutation p.R691Q 0.60 tolerated(0.58) probably_damaging(0.998) TCGA-FW-A3R5-06 X 23928430 23928430 C T CXorf58 Missense_Mutation p.S4F 0.25 tolerated_low_confidence(0.1) benign(0.097) TCGA-FW-A3R5-06 X 23957474 23957474 G A CXorf58 3'UTR 0.50 TCGA-FW-A3R5-06 X 2408546 2408546 G A ZBED1 Missense_Mutation p.P72L 0.23 tolerated(0.09) probably_damaging(0.996) TCGA-FW-A3R5-06 X 2408788 2408788 G A ZBED1 5'UTR 0.29 TCGA-FW-A3R5-06 X 24608226 24608226 C T PCYT1B Missense_Mutation p.E134K 0.61 deleterious(0) probably_damaging(0.971) TCGA-FW-A3R5-06 X 26157771 26157771 G A MAGEB18 Missense_Mutation p.M223I 0.50 deleterious(0) benign(0.002) TCGA-FW-A3R5-06 X 26158069 26158069 C T MAGEB18 Missense_Mutation p.H323Y 0.44 deleterious(0.04) benign(0.171) TCGA-FW-A3R5-06 X 26212638 26212638 C T MAGEB6 Silent p.V225V 0.60 TCGA-FW-A3R5-06 X 26212685 26212685 C T MAGEB6 Missense_Mutation p.S241F 0.68 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 X 2632473 2632473 C T CD99 Silent p.F26F 0.18 TCGA-FW-A3R5-06 X 27766568 27766568 T A DCAF8L2 Missense_Mutation p.L519H 0.77 deleterious(0) probably_damaging(0.996) TCGA-FW-A3R5-06 X 27839493 27839493 G A MAGEB10 Missense_Mutation p.D24N 0.37 tolerated(0.33) benign(0.065) TCGA-FW-A3R5-06 X 27839532 27839532 G A MAGEB10 Missense_Mutation p.E37K 0.51 tolerated(0.2) benign(0.377) TCGA-FW-A3R5-06 X 27839611 27839611 G A MAGEB10 Missense_Mutation p.G63E 0.50 tolerated(0.51) benign(0.03) TCGA-FW-A3R5-06 X 27840182 27840182 G A MAGEB10 Silent p.V253V 0.16 TCGA-FW-A3R5-06 X 27840247 27840247 G A MAGEB10 Nonsense_Mutation p.W275* 0.63 TCGA-FW-A3R5-06 X 27997756 27997756 C T DCAF8L1 Missense_Mutation p.D566N 0.13 tolerated(0.35) benign(0.001) TCGA-FW-A3R5-06 X 27997849 27997849 C T DCAF8L1 Missense_Mutation p.D535N 0.66 deleterious(0.04) benign(0.052) TCGA-FW-A3R5-06 X 27998538 27998538 G A DCAF8L1 Missense_Mutation p.S305L 0.45 tolerated(0.06) benign(0.147) TCGA-FW-A3R5-06 X 27999223 27999223 C T DCAF8L1 Missense_Mutation p.E77K 0.51 deleterious_low_confidence(0.04) probably_damaging(0.915) TCGA-FW-A3R5-06 X 27999275 27999275 G A DCAF8L1 Silent p.F59F 0.49 TCGA-FW-A3R5-06 X 27999539 27999539 G A DCAF8L1 5'UTR 0.36 TCGA-FW-A3R5-06 X 2928182 2928182 C T ARSH Silent p.P68P 0.60 TCGA-FW-A3R5-06 X 29301113 29301113 G A IL1RAPL1 Silent p.E47E 0.59 TCGA-FW-A3R5-06 X 2931166 2931166 C T ARSH Missense_Mutation p.T98I 0.61 deleterious(0.01) probably_damaging(0.979) TCGA-FW-A3R5-06 X 2933011 2933011 G A ARSH Missense_Mutation p.G114D 0.29 deleterious(0) probably_damaging(0.946) TCGA-FW-A3R5-06 X 29414516 29414516 G A IL1RAPL1 Silent p.E168E 0.54 TCGA-FW-A3R5-06 X 29938169 29938169 G A IL1RAPL1 Missense_Mutation p.G339R 0.63 tolerated(0.65) probably_damaging(0.935) TCGA-FW-A3R5-06 X 29973335 29973335 C T IL1RAPL1 Nonsense_Mutation p.R497* 0.47 TCGA-FW-A3R5-06 X 29973592 29973592 G A IL1RAPL1 Silent p.G582G 0.50 TCGA-FW-A3R5-06 X 3002618 3002618 C T ARSF Silent p.L247L 0.56 TCGA-FW-A3R5-06 X 3019165 3019165 G A ARSF Silent p.R335R 0.57 TCGA-FW-A3R5-06 X 30237284 30237284 G A MAGEB2 Nonsense_Mutation p.W196* 0.19 TCGA-FW-A3R5-06 X 30254404 30254404 C T MAGEB3 Silent p.F121F 0.53 TCGA-FW-A3R5-06 X 30254511 30254511 C T MAGEB3 Missense_Mutation p.S157F 0.71 deleterious(0) possibly_damaging(0.762) TCGA-FW-A3R5-06 X 30268851 30268851 G A MAGEB1 Missense_Mutation p.E81K 0.38 tolerated(0.35) benign(0.007) TCGA-FW-A3R5-06 X 30269119 30269119 C T MAGEB1 Missense_Mutation p.P170L 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-FW-A3R5-06 X 30269430 30269430 C T MAGEB1 Missense_Mutation p.P274S 0.61 deleterious(0.01) possibly_damaging(0.681) TCGA-FW-A3R5-06 X 30269468 30269468 C T MAGEB1 Silent p.L286L 0.59 TCGA-FW-A3R5-06 X 3030524 3030524 G A ARSF Missense_Mutation p.G567E 0.62 deleterious(0) probably_damaging(0.978) TCGA-FW-A3R5-06 X 30327363 30327363 C T NR0B1 Missense_Mutation p.G40S 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3R5-06 X 31645925 31645925 G A DMD Silent p.F2694F 0.52 TCGA-FW-A3R5-06 X 31697609 31697609 C T DMD Nonsense_Mutation p.W2585* 0.55 TCGA-FW-A3R5-06 X 3227866 3227866 C T MXRA5 Missense_Mutation p.G2793E 0.64 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 X 3228099 3228099 C T MXRA5 Silent p.T2715T 0.56 TCGA-FW-A3R5-06 X 3228264 3228264 G A MXRA5 Silent p.T2660T 0.55 TCGA-FW-A3R5-06 X 3229530 3229530 C T MXRA5 Silent p.V2238V 0.53 TCGA-FW-A3R5-06 X 3236042 3236042 C T MXRA5 Missense_Mutation p.A1894T 0.48 deleterious(0.03) possibly_damaging(0.62) TCGA-FW-A3R5-06 X 32366635 32366635 G A DMD Missense_Mutation p.P1779L 0.59 possibly_damaging(0.851) TCGA-FW-A3R5-06 X 3238441 3238441 C T MXRA5 Missense_Mutation p.R1762K 0.64 tolerated(0.48) benign(0.009) TCGA-FW-A3R5-06 X 3238445 3238445 C T MXRA5 Missense_Mutation p.E1761K 0.62 tolerated(0.07) benign(0.051) TCGA-FW-A3R5-06 X 3240417 3240417 C T MXRA5 Missense_Mutation p.M1103I 0.63 tolerated(0.4) benign(0) TCGA-FW-A3R5-06 X 3240611 3240611 C T MXRA5 Missense_Mutation p.D1039N 0.63 tolerated(0.06) benign(0.1) TCGA-FW-A3R5-06 X 3240871 3240871 G A MXRA5 Missense_Mutation p.S952L 0.37 tolerated(0.38) benign(0) TCGA-FW-A3R5-06 X 32466746 32466746 C T DMD Missense_Mutation p.E1205K 0.50 possibly_damaging(0.879) TCGA-FW-A3R5-06 X 3248121 3248121 C T MXRA5 Missense_Mutation p.G216E 0.36 deleterious(0.03) probably_damaging(0.982) TCGA-FW-A3R5-06 X 32486707 32486707 C T DMD Missense_Mutation p.E1024K 0.61 benign(0.031) TCGA-FW-A3R5-06 X 32716075 32716075 G A DMD Missense_Mutation p.S291F 0.73 probably_damaging(0.917) TCGA-FW-A3R5-06 X 34148258 34148258 G A FAM47A Missense_Mutation p.P713L 0.58 deleterious(0) probably_damaging(0.991) TCGA-FW-A3R5-06 X 34148669 34148669 C T FAM47A Missense_Mutation p.R576Q 0.33 tolerated(0.69) benign(0.005) TCGA-FW-A3R5-06 X 34149046 34149046 C T FAM47A Silent p.K450K 0.55 TCGA-FW-A3R5-06 X 34961675 34961675 C T FAM47B Missense_Mutation p.R243C 0.10 tolerated(0.08) possibly_damaging(0.541) TCGA-FW-A3R5-06 X 34961754 34961754 C T FAM47B Missense_Mutation p.S269F 0.54 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 34961846 34961846 C T FAM47B Missense_Mutation p.P300S 0.64 tolerated(0.24) benign(0.005) TCGA-FW-A3R5-06 X 34961963 34961963 C T FAM47B Missense_Mutation p.H339Y 0.69 tolerated(0.26) benign(0.187) TCGA-FW-A3R5-06 X 34961968 34961968 G A FAM47B Silent p.R340R 0.66 TCGA-FW-A3R5-06 X 34962328 34962328 G A FAM47B Silent p.S460S 0.14 TCGA-FW-A3R5-06 X 34962775 34962775 G A FAM47B Silent p.K609K 0.55 TCGA-FW-A3R5-06 X 35974080 35974080 G A CXorf22 Missense_Mutation p.E393K 0.42 tolerated(0.18) benign(0.164) TCGA-FW-A3R5-06 X 35974126 35974126 C T CXorf22 Missense_Mutation p.P408L 0.36 deleterious(0) probably_damaging(0.995) TCGA-FW-A3R5-06 X 35974178 35974178 C T CXorf22 Silent p.F425F 0.38 TCGA-FW-A3R5-06 X 35988894 35988894 C T CXorf22 Silent p.F608F 0.54 TCGA-FW-A3R5-06 X 35993899 35993899 G A CXorf22 Missense_Mutation p.R861Q 0.40 tolerated(0.93) benign(0.007) TCGA-FW-A3R5-06 X 36007457 36007457 C T CXorf22 Missense_Mutation p.S912L 0.39 deleterious(0.02) possibly_damaging(0.804) TCGA-FW-A3R5-06 X 36091363 36091363 G A CHDC2 Missense_Mutation p.E100K 0.46 tolerated(0.08) benign(0.028) TCGA-FW-A3R5-06 X 36091374 36091374 G A CHDC2 Silent p.K103K 0.50 TCGA-FW-A3R5-06 X 36122792 36122792 G A CHDC2 Nonsense_Mutation p.W343* 0.17 TCGA-FW-A3R5-06 X 36156555 36156555 G A CHDC2 Missense_Mutation p.E412K 0.65 tolerated(0.18) probably_damaging(0.994) TCGA-FW-A3R5-06 X 37027077 37027077 C T FAM47C Silent p.L198L 0.59 TCGA-FW-A3R5-06 X 37027304 37027304 C T FAM47C Missense_Mutation p.P274L 0.73 tolerated(0.1) possibly_damaging(0.556) TCGA-FW-A3R5-06 X 37027525 37027525 G A FAM47C Missense_Mutation p.E348K 0.56 tolerated(0.98) benign(0.069) TCGA-FW-A3R5-06 X 37027567 37027567 C T FAM47C Missense_Mutation p.R362C 0.39 deleterious(0.02) benign(0.179) TCGA-FW-A3R5-06 X 37027662 37027662 G A FAM47C Silent p.E393E 0.57 TCGA-FW-A3R5-06 X 37028546 37028546 C T FAM47C Missense_Mutation p.S688F 0.49 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 37028738 37028738 C T FAM47C Missense_Mutation p.P752L 0.38 tolerated(0.78) benign(0.018) TCGA-FW-A3R5-06 X 37028767 37028767 C T FAM47C Missense_Mutation p.L762F 0.60 tolerated(0.16) benign(0.022) TCGA-FW-A3R5-06 X 37029580 37029580 G A FAM47C Missense_Mutation p.E1033K 0.19 tolerated(0.24) benign(0.172) TCGA-FW-A3R5-06 X 37312709 37312709 C T PRRG1 Silent p.S164S 0.52 TCGA-FW-A3R5-06 X 37518741 37518741 C T LANCL3 Missense_Mutation p.L242F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3R5-06 X 37663303 37663303 C T CYBB Silent p.I357I 0.15 TCGA-FW-A3R5-06 X 37850185 37850185 C T CXorf27 Silent p.F31F 0.15 TCGA-FW-A3R5-06 X 37850476 37850476 C T CXorf27 3'UTR 0.80 TCGA-FW-A3R5-06 X 37935888 37935888 G A SYTL5 Missense_Mutation p.R208Q 0.54 tolerated(0.05) benign(0.158) TCGA-FW-A3R5-06 X 38262948 38262948 G A OTC Missense_Mutation p.M206I 0.61 tolerated(0.7) benign(0.073) TCGA-FW-A3R5-06 X 40551483 40551483 G A MED14 Silent p.F644F 0.65 TCGA-FW-A3R5-06 X 41055511 41055511 C T USP9X Missense_Mutation p.R1329C 0.56 deleterious(0) probably_damaging(0.988) TCGA-FW-A3R5-06 X 41084153 41084153 C T USP9X Missense_Mutation p.R2304C 0.19 deleterious(0.01) benign(0.001) TCGA-FW-A3R5-06 X 43571145 43571145 C T MAOA Silent p.A111A 0.49 TCGA-FW-A3R5-06 X 43571967 43571967 C T MAOA Missense_Mutation p.P143S 0.58 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 X 43627933 43627933 C T MAOB Missense_Mutation p.D460N 0.58 tolerated(0.38) benign(0) TCGA-FW-A3R5-06 X 43652765 43652765 G A MAOB Missense_Mutation p.P277S 0.59 tolerated(0.14) benign(0.028) TCGA-FW-A3R5-06 X 46360258 46360258 C T ZNF674 Missense_Mutation p.E256K 0.35 tolerated(0.06) benign(0.309) TCGA-FW-A3R5-06 X 46522065 46522065 C T SLC9A7 Silent p.A269A 0.54 TCGA-FW-A3R5-06 X 46913813 46913813 C T JADE3 Missense_Mutation p.S409F 0.50 deleterious(0.01) possibly_damaging(0.602) TCGA-FW-A3R5-06 X 47060944 47060944 C T UBA1 Missense_Mutation p.S249F 0.71 deleterious(0) possibly_damaging(0.675) TCGA-FW-A3R5-06 X 47100963 47100963 C T USP11 Silent p.S391S 0.66 TCGA-FW-A3R5-06 X 47272290 47272290 C T ZNF157 Missense_Mutation p.P273L 0.66 deleterious(0.01) probably_damaging(1) TCGA-FW-A3R5-06 X 48047090 48047090 C T SSX5 Missense_Mutation p.D223N 0.50 deleterious(0) possibly_damaging(0.868) TCGA-FW-A3R5-06 X 48047099 48047099 C T SSX5 Missense_Mutation p.E220K 0.50 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 48049607 48049607 C T SSX5 Missense_Mutation p.G184E 0.60 tolerated(0.09) benign(0.318) TCGA-FW-A3R5-06 X 48206962 48206962 C T SSX3 Missense_Mutation p.D182N 0.57 deleterious(0.01) probably_damaging(0.982) TCGA-FW-A3R5-06 X 48270248 48270248 C T SSX4B Silent p.S43S 0.15 TCGA-FW-A3R5-06 X 48419014 48419014 C T TBC1D25 Missense_Mutation p.P573L 0.44 deleterious(0.03) benign(0.025) TCGA-FW-A3R5-06 X 48458948 48458948 C T WDR13 Silent p.I255I 0.58 TCGA-FW-A3R5-06 X 48542353 48542353 G A WAS Silent p.E37E 0.62 TCGA-FW-A3R5-06 X 48666444 48666444 C A HDAC6 Missense_Mutation p.P213T 0.42 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 48780416 48780416 G A OTUD5 3'UTR 0.38 TCGA-FW-A3R5-06 X 48826306 48826306 G A KCND1 Missense_Mutation p.P125S 0.55 tolerated(0.06) benign(0.188) TCGA-FW-A3R5-06 X 48896732 48896732 G A TFE3 Missense_Mutation p.P145L 0.46 tolerated(0.14) unknown(0) TCGA-FW-A3R5-06 X 49062078 49062078 C T CACNA1F Missense_Mutation p.A1901T 0.36 deleterious(0) possibly_damaging(0.811) TCGA-FW-A3R5-06 X 49067928 49067928 C T CACNA1F Missense_Mutation p.E1383K 0.48 deleterious(0.03) benign(0.233) TCGA-FW-A3R5-06 X 49355801 49355801 C T GAGE2A Missense_Mutation p.P28L 0.19 tolerated(0.16) benign(0.433) TCGA-FW-A3R5-06 X 49597176 49597176 G A PAGE4 Missense_Mutation p.R72Q 0.19 tolerated(0.25) benign(0.002) TCGA-FW-A3R5-06 X 49597218 49597218 C T PAGE4 Missense_Mutation p.P86L 0.40 tolerated(1) possibly_damaging(0.903) TCGA-FW-A3R5-06 X 49957581 49957581 C T AKAP4 Missense_Mutation p.A595T 0.53 tolerated(0.37) benign(0.067) TCGA-FW-A3R5-06 X 49957827 49957827 C T AKAP4 Missense_Mutation p.G513R 0.61 deleterious(0.03) possibly_damaging(0.879) TCGA-FW-A3R5-06 X 49958711 49958711 G A AKAP4 Missense_Mutation p.S218F 0.69 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 50052708 50052708 C T CCNB3 Silent p.T513T 0.20 TCGA-FW-A3R5-06 X 50094243 50094243 C T CCNB3 Missense_Mutation p.P1322S 0.62 deleterious(0.01) probably_damaging(0.98) TCGA-FW-A3R5-06 X 50147111 50147111 G A DGKK RNA 0.60 TCGA-FW-A3R5-06 X 50163489 50163489 C T DGKK RNA 0.68 TCGA-FW-A3R5-06 X 50339780 50339780 C T SHROOM4 Missense_Mutation p.R1466Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 50345793 50345793 G A SHROOM4 Missense_Mutation p.S1261L 0.55 deleterious(0) possibly_damaging(0.572) TCGA-FW-A3R5-06 X 50653837 50653837 C T BMP15 Silent p.F18F 0.20 TCGA-FW-A3R5-06 X 51150631 51150631 C T CXorf67 Missense_Mutation p.P255S 0.61 tolerated(0.15) benign(0.034) TCGA-FW-A3R5-06 X 51487060 51487060 C T GSPT2 Missense_Mutation p.S113F 0.64 tolerated(0.07) benign(0.001) TCGA-FW-A3R5-06 X 52673695 52673695 C T SSX7 3'UTR 0.54 TCGA-FW-A3R5-06 X 52847240 52847240 G A XAGE5 3'UTR 0.50 TCGA-FW-A3R5-06 X 52891644 52891644 C T XAGE3 3'UTR 0.28 TCGA-FW-A3R5-06 X 53223912 53223912 G A KDM5C Silent p.A1149A 0.43 TCGA-FW-A3R5-06 X 53610870 53610870 G A HUWE1 Missense_Mutation p.P1723L 0.60 benign(0.024) TCGA-FW-A3R5-06 X 53613787 53613787 G A HUWE1 Missense_Mutation p.P1566L 0.31 benign(0.383) TCGA-FW-A3R5-06 X 53617456 53617456 G A HUWE1 Missense_Mutation p.L1367F 0.15 benign(0.035) TCGA-FW-A3R5-06 X 53630443 53630443 G A HUWE1 Missense_Mutation p.S921F 0.63 probably_damaging(0.952) TCGA-FW-A3R5-06 X 54048724 54048724 G A PHF8 Silent p.F123F 0.57 TCGA-FW-A3R5-06 X 54159224 54159224 G A FAM120C Missense_Mutation p.R655W 0.43 deleterious(0) probably_damaging(0.994) TCGA-FW-A3R5-06 X 54184166 54184166 G A FAM120C Missense_Mutation p.H329Y 0.52 tolerated(0.27) possibly_damaging(0.674) TCGA-FW-A3R5-06 X 54275341 54275341 G A WNK3 Missense_Mutation p.S1147F 0.43 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 X 54360134 54360134 T A WNK3 5'UTR 0.25 TCGA-FW-A3R5-06 X 54574665 54574665 C T GNL3L Missense_Mutation p.R212C 0.64 deleterious(0.02) probably_damaging(0.912) TCGA-FW-A3R5-06 X 54578016 54578016 C T GNL3L Silent p.V293V 0.19 TCGA-FW-A3R5-06 X 54578136 54578136 C T GNL3L Silent p.T333T 0.15 TCGA-FW-A3R5-06 X 54776454 54776454 C T ITIH6 Silent p.V1272V 0.77 TCGA-FW-A3R5-06 X 54777751 54777751 G A ITIH6 Missense_Mutation p.R1139C 0.44 tolerated(0.12) benign(0.019) TCGA-FW-A3R5-06 X 54785280 54785280 C T ITIH6 Silent p.V409V 0.52 TCGA-FW-A3R5-06 X 54840906 54840906 C T MAGED2 Intron 0.14 TCGA-FW-A3R5-06 X 54951462 54951462 C T TRO Silent p.F482F 0.59 TCGA-FW-A3R5-06 X 54955914 54955914 C T TRO Silent p.F919F 0.42 TCGA-FW-A3R5-06 X 54956501 54956501 C T TRO Missense_Mutation p.T1115I 0.71 deleterious(0.04) benign(0.417) TCGA-FW-A3R5-06 X 55247029 55247029 C T PAGE5 5'UTR 0.67 TCGA-FW-A3R5-06 X 55479462 55479462 C T MAGEH1 Missense_Mutation p.P219S 0.58 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-FW-A3R5-06 X 55479463 55479463 C T MAGEH1 Missense_Mutation p.P219L 0.58 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FW-A3R5-06 X 55513531 55513531 G A USP51 Silent p.S614S 0.23 TCGA-FW-A3R5-06 X 55513532 55513532 G A USP51 Missense_Mutation p.S614F 0.23 deleterious(0) probably_damaging(0.99) TCGA-FW-A3R5-06 X 55650144 55650144 G A FOXR2 5'UTR 0.12 TCGA-FW-A3R5-06 X 57407426 57407426 C A FAAH2 Silent p.S320S 0.65 TCGA-FW-A3R5-06 X 57473361 57473361 G A FAAH2 Missense_Mutation p.E373K 0.40 tolerated(0.23) benign(0.026) TCGA-FW-A3R5-06 X 5821579 5821579 C T NLGN4X Silent p.V380V 0.38 TCGA-FW-A3R5-06 X 595460 595460 C T SHOX Silent p.L129L 0.42 TCGA-FW-A3R5-06 X 6069208 6069208 G A NLGN4X Silent p.I100I 0.33 TCGA-FW-A3R5-06 X 6069466 6069466 G A NLGN4X Silent p.F14F 0.52 TCGA-FW-A3R5-06 X 63445416 63445416 G A ASB12 Missense_Mutation p.L39F 0.16 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 63488441 63488441 C G MTMR8 Missense_Mutation p.E697D 0.53 tolerated_low_confidence(0.14) benign(0.001) TCGA-FW-A3R5-06 X 64138976 64138976 C T ZC4H2 Silent p.R169R 0.67 TCGA-FW-A3R5-06 X 64139971 64139971 G A ZC4H2 Missense_Mutation p.L130F 0.21 tolerated(0.24) possibly_damaging(0.657) TCGA-FW-A3R5-06 X 64141826 64141826 C T ZC4H2 Silent p.K32K 0.66 TCGA-FW-A3R5-06 X 64141913 64141913 G A ZC4H2 Intron 0.67 TCGA-FW-A3R5-06 X 6451927 6451927 C T VCX3A Silent p.V140V 0.17 TCGA-FW-A3R5-06 X 65252517 65252517 G A VSIG4 Missense_Mutation p.L163F 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3R5-06 X 65259849 65259849 G A VSIG4 5'UTR 0.71 TCGA-FW-A3R5-06 X 66905896 66905896 G A AR Missense_Mutation p.D605N 0.65 deleterious(0) possibly_damaging(0.894) TCGA-FW-A3R5-06 X 66931291 66931291 G A AR Missense_Mutation p.E645K 0.50 tolerated(0.05) probably_damaging(0.954) TCGA-FW-A3R5-06 X 66931444 66931444 G A AR Missense_Mutation p.D696N 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 66937361 66937361 C T AR Nonsense_Mutation p.Q739* 0.60 TCGA-FW-A3R5-06 X 66937411 66937411 C T AR Silent p.F755F 0.58 TCGA-FW-A3R5-06 X 66937441 66937441 C T AR Silent p.F765F 0.56 TCGA-FW-A3R5-06 X 66942707 66942707 G A AR Missense_Mutation p.E830K 0.20 deleterious(0.03) possibly_damaging(0.714) TCGA-FW-A3R5-06 X 67293003 67293003 C T OPHN1 Missense_Mutation p.E609K 0.82 tolerated(0.16) benign(0.033) TCGA-FW-A3R5-06 X 67502952 67502952 G A OPHN1 Silent p.S86S 0.42 TCGA-FW-A3R5-06 X 67938308 67938308 G A STARD8 Missense_Mutation p.G518R 0.65 deleterious(0.04) benign(0.093) TCGA-FW-A3R5-06 X 67941580 67941580 C T STARD8 Silent p.P817P 0.50 TCGA-FW-A3R5-06 X 67943846 67943846 C T STARD8 Missense_Mutation p.P1026L 0.49 deleterious(0.03) benign(0.357) TCGA-FW-A3R5-06 X 68060237 68060237 C T EFNB1 Silent p.L261L 0.50 TCGA-FW-A3R5-06 X 69177053 69177053 C T EDA Intron 0.78 TCGA-FW-A3R5-06 X 69261626 69261626 C T AWAT2 3'UTR 0.79 TCGA-FW-A3R5-06 X 69282509 69282509 C T OTUD6A Silent p.L45L 0.46 TCGA-FW-A3R5-06 X 69282579 69282579 G A OTUD6A Missense_Mutation p.D69N 0.60 tolerated(1) benign(0.003) TCGA-FW-A3R5-06 X 69283116 69283116 G A OTUD6A Missense_Mutation p.E248K 0.44 deleterious(0.02) probably_damaging(0.991) TCGA-FW-A3R5-06 X 69419661 69419661 G A DGAT2L6 Splice_Site p.X66_splice 0.47 TCGA-FW-A3R5-06 X 69622482 69622482 A T KIF4A Missense_Mutation p.Q852H 0.45 tolerated(0.32) benign(0.002) TCGA-FW-A3R5-06 X 69669255 69669255 C T DLG3 Missense_Mutation p.P152L 0.58 deleterious(0) benign(0.006) TCGA-FW-A3R5-06 X 69699102 69699102 C T DLG3 Missense_Mutation p.S503F 0.57 deleterious(0) benign(0.073) TCGA-FW-A3R5-06 X 69718372 69718372 G A DLG3 Missense_Mutation p.G608R 0.36 deleterious(0.02) benign(0.148) TCGA-FW-A3R5-06 X 69719813 69719813 C T DLG3 Nonsense_Mutation p.Q687* 0.39 TCGA-FW-A3R5-06 X 70080744 70080744 G A TEX11 Missense_Mutation p.S111L 0.61 tolerated(0.2) benign(0.007) TCGA-FW-A3R5-06 X 70145692 70145692 G A SLC7A3 Missense_Mutation p.P611S 0.58 tolerated(0.33) benign(0.001) TCGA-FW-A3R5-06 X 7023738 7023738 G A HDHD1 Missense_Mutation p.P91L 0.24 deleterious(0) possibly_damaging(0.534) TCGA-FW-A3R5-06 X 70325897 70325897 G T CXorf65 Missense_Mutation p.T68K 0.69 tolerated(0.08) possibly_damaging(0.9) TCGA-FW-A3R5-06 X 70342950 70342950 C T MED12 Silent p.S497S 0.56 TCGA-FW-A3R5-06 X 70375179 70375179 C T NLGN3 Silent p.I231I 0.55 TCGA-FW-A3R5-06 X 70387219 70387219 C T NLGN3 Silent p.V424V 0.57 TCGA-FW-A3R5-06 X 70472591 70472591 G A ZMYM3 Missense_Mutation p.S172F 0.11 deleterious_low_confidence(0.01) benign(0.347) TCGA-FW-A3R5-06 X 70764432 70764432 C T OGT Missense_Mutation p.R160C 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-FW-A3R5-06 X 70787583 70787583 C T OGT Silent p.T941T 0.54 TCGA-FW-A3R5-06 X 70836294 70836294 C T CXCR3 Missense_Mutation p.G390E 0.26 tolerated(0.53) benign(0.138) TCGA-FW-A3R5-06 X 71349673 71349673 C T RGAG4 3'UTR 0.56 TCGA-FW-A3R5-06 X 71349761 71349761 G A RGAG4 Nonsense_Mutation p.R544* 0.41 TCGA-FW-A3R5-06 X 71360216 71360216 G A NHSL2 Missense_Mutation p.E940K 0.59 deleterious(0.04) probably_damaging(0.977) TCGA-FW-A3R5-06 X 7171326 7171326 C T STS Missense_Mutation p.A34V 0.31 tolerated(0.32) benign(0.228) TCGA-FW-A3R5-06 X 71825460 71825460 G A PHKA1 Silent p.P872P 0.48 TCGA-FW-A3R5-06 X 71825461 71825461 G A PHKA1 Missense_Mutation p.P872L 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3R5-06 X 71842984 71842984 C T PHKA1 Missense_Mutation p.M645I 0.61 tolerated(0.26) benign(0) TCGA-FW-A3R5-06 X 72434244 72434244 C T NAP1L2 Missense_Mutation p.E29K 0.56 tolerated_low_confidence(0.14) benign(0.002) TCGA-FW-A3R5-06 X 72434304 72434304 C T NAP1L2 Missense_Mutation p.E9K 0.41 tolerated_low_confidence(0.07) benign(0.003) TCGA-FW-A3R5-06 X 72434306 72434306 T C NAP1L2 Missense_Mutation p.K8R 0.41 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-FW-A3R5-06 X 73040873 73040873 G A XIST RNA 0.29 TCGA-FW-A3R5-06 X 73042718 73042718 G A XIST RNA 0.58 TCGA-FW-A3R5-06 X 73043525 73043525 C T XIST RNA 0.31 TCGA-FW-A3R5-06 X 73044380 73044380 C T XIST RNA 0.53 TCGA-FW-A3R5-06 X 73046475 73046475 G A XIST RNA 0.57 TCGA-FW-A3R5-06 X 73046521 73046521 C T XIST RNA 0.60 TCGA-FW-A3R5-06 X 73046763 73046763 C T XIST RNA 0.59 TCGA-FW-A3R5-06 X 73046780 73046780 C T XIST RNA 0.56 TCGA-FW-A3R5-06 X 73063711 73063711 G A XIST RNA 0.80 TCGA-FW-A3R5-06 X 73063793 73063793 G A XIST RNA 0.44 TCGA-FW-A3R5-06 X 73065742 73065742 C T XIST RNA 0.50 TCGA-FW-A3R5-06 X 73066278 73066278 G A XIST RNA 0.60 TCGA-FW-A3R5-06 X 73066477 73066477 G A XIST RNA 0.66 TCGA-FW-A3R5-06 X 73068427 73068427 G A XIST RNA 0.62 TCGA-FW-A3R5-06 X 73069424 73069424 G A XIST RNA 0.56 TCGA-FW-A3R5-06 X 73072163 73072163 G A XIST RNA 0.69 TCGA-FW-A3R5-06 X 73072164 73072164 G A XIST RNA 0.69 TCGA-FW-A3R5-06 X 73749129 73749129 C T SLC16A2 Missense_Mutation p.L418F 0.54 deleterious(0) probably_damaging(0.962) TCGA-FW-A3R5-06 X 73960273 73960273 T A KIAA2022 Silent p.T1373T 0.59 TCGA-FW-A3R5-06 X 73960618 73960618 C T KIAA2022 Silent p.L1258L 0.83 TCGA-FW-A3R5-06 X 73960771 73960771 C T KIAA2022 Silent p.G1207G 0.61 TCGA-FW-A3R5-06 X 73961518 73961518 G A KIAA2022 Silent p.L958L 0.10 TCGA-FW-A3R5-06 X 73962516 73962516 G A KIAA2022 Missense_Mutation p.R626C 0.52 deleterious(0) probably_damaging(0.987) TCGA-FW-A3R5-06 X 73964162 73964162 G A KIAA2022 Missense_Mutation p.P77L 0.61 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-FW-A3R5-06 X 73964163 73964163 G A KIAA2022 Missense_Mutation p.P77S 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 74284974 74284974 G A ABCB7 Missense_Mutation p.H589Y 0.59 deleterious(0.01) probably_damaging(0.993) TCGA-FW-A3R5-06 X 74641768 74641768 C T ZDHHC15 Missense_Mutation p.G265D 0.43 deleterious(0) probably_damaging(0.936) TCGA-FW-A3R5-06 X 74644533 74644533 G A ZDHHC15 Silent p.L230L 0.52 TCGA-FW-A3R5-06 X 74644535 74644535 G A ZDHHC15 Missense_Mutation p.L230F 0.50 deleterious(0) probably_damaging(0.967) TCGA-FW-A3R5-06 X 74698746 74698746 G A ZDHHC15 Missense_Mutation p.P80S 0.58 deleterious(0.01) possibly_damaging(0.833) TCGA-FW-A3R5-06 X 75003386 75003386 C T MAGEE2 Missense_Mutation p.E501K 0.64 deleterious(0) probably_damaging(0.98) TCGA-FW-A3R5-06 X 75004186 75004186 C T MAGEE2 Missense_Mutation p.R234Q 0.49 tolerated(0.07) benign(0.027) TCGA-FW-A3R5-06 X 75004535 75004535 G A MAGEE2 Missense_Mutation p.L118F 0.36 deleterious(0) probably_damaging(0.998) TCGA-FW-A3R5-06 X 75004631 75004631 C T MAGEE2 Missense_Mutation p.D86N 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-FW-A3R5-06 X 75649270 75649270 C T MAGEE1 Missense_Mutation p.S316L 0.16 tolerated_low_confidence(0.43) benign(0) TCGA-FW-A3R5-06 X 75649546 75649546 C T MAGEE1 Missense_Mutation p.P408L 0.20 deleterious(0.03) benign(0.038) TCGA-FW-A3R5-06 X 75649612 75649612 C T MAGEE1 Missense_Mutation p.S430F 0.29 deleterious(0) benign(0.165) TCGA-FW-A3R5-06 X 76777849 76777849 G A ATRX Silent p.F2289F 0.57 TCGA-FW-A3R5-06 X 76939021 76939021 G A ATRX Missense_Mutation p.S576L 0.20 benign(0.009) TCGA-FW-A3R5-06 X 77913356 77913356 G A ZCCHC5 Missense_Mutation p.P188S 0.56 tolerated(0.14) benign(0.122) TCGA-FW-A3R5-06 X 78010365 78010365 C T LPAR4 5'UTR 0.63 TCGA-FW-A3R5-06 X 7811976 7811976 G A VCX Missense_Mutation p.M180I 0.30 tolerated(0.48) unknown(0) TCGA-FW-A3R5-06 X 79698625 79698625 A T FAM46D Missense_Mutation p.K196I 0.67 deleterious(0.01) benign(0.144) TCGA-FW-A3R5-06 X 79939559 79939559 G A BRWD3 Missense_Mutation p.R1395C 0.22 deleterious(0) probably_damaging(0.997) TCGA-FW-A3R5-06 X 82763827 82763827 G T POU3F4 Silent p.V165V 0.60 TCGA-FW-A3R5-06 X 83128432 83128432 C T CYLC1 Missense_Mutation p.S239L 0.22 tolerated(0.13) possibly_damaging(0.504) TCGA-FW-A3R5-06 X 83129338 83129338 C T CYLC1 Missense_Mutation p.S541L 0.61 tolerated(0.06) benign(0.331) TCGA-FW-A3R5-06 X 83129493 83129493 G A CYLC1 Missense_Mutation p.E593K 0.56 tolerated(1) benign(0.093) TCGA-FW-A3R5-06 X 83362658 83362658 G A RPS6KA6 Missense_Mutation p.P362S 0.38 tolerated(0.55) benign(0.014) TCGA-FW-A3R5-06 X 83411176 83411176 G A RPS6KA6 Silent p.I55I 0.42 TCGA-FW-A3R5-06 X 8434313 8434313 G A VCX3B Missense_Mutation p.M210I 0.17 tolerated(0.49) unknown(0) TCGA-FW-A3R5-06 X 84363139 84363139 C T SATL1 Nonsense_Mutation p.W279* 0.43 TCGA-FW-A3R5-06 X 84363153 84363153 C T SATL1 Missense_Mutation p.M274I 0.48 tolerated(0.35) benign(0.005) TCGA-FW-A3R5-06 X 84510501 84510501 G A ZNF711 Missense_Mutation p.E106K 0.57 tolerated_low_confidence(0.59) probably_damaging(0.955) TCGA-FW-A3R5-06 X 84520207 84520207 G A ZNF711 Missense_Mutation p.E288K 0.58 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 84526469 84526469 C T ZNF711 Missense_Mutation p.H641Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 84537235 84537235 C T POF1B Missense_Mutation p.E580K 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-FW-A3R5-06 X 84537277 84537277 C T POF1B Missense_Mutation p.E566K 0.51 tolerated(0.86) probably_damaging(0.997) TCGA-FW-A3R5-06 X 84559348 84559348 C T POF1B Splice_Site p.X522_splice 0.38 TCGA-FW-A3R5-06 X 84585980 84585980 C T POF1B Missense_Mutation p.E277K 0.45 deleterious(0.01) possibly_damaging(0.547) TCGA-FW-A3R5-06 X 85906067 85906067 G A DACH2 Silent p.A223A 0.73 TCGA-FW-A3R5-06 X 85950141 85950141 C T DACH2 Missense_Mutation p.P297L 0.65 tolerated(0.78) benign(0.06) TCGA-FW-A3R5-06 X 86068206 86068206 G A DACH2 Missense_Mutation p.R488Q 0.68 deleterious(0.03) benign(0.01) TCGA-FW-A3R5-06 X 86772975 86772975 C T KLHL4 Nonsense_Mutation p.Q27* 0.64 TCGA-FW-A3R5-06 X 8763148 8763148 C T FAM9A Missense_Mutation p.E268K 0.55 deleterious_low_confidence(0.04) unknown(0) TCGA-FW-A3R5-06 X 89177317 89177317 C T TGIF2LX Missense_Mutation p.P78L 0.60 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 X 89177553 89177553 C T TGIF2LX Silent p.L157L 0.20 TCGA-FW-A3R5-06 X 91134173 91134173 C T PCDH11X Silent p.I978I 0.58 TCGA-FW-A3R5-06 X 91873421 91873421 C T PCDH11X Missense_Mutation p.P1176S 0.63 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-FW-A3R5-06 X 92927586 92927586 C T NAP1L3 Missense_Mutation p.D240N 0.59 tolerated_low_confidence(0.07) benign(0.008) TCGA-FW-A3R5-06 X 92928218 92928218 G A NAP1L3 Missense_Mutation p.S29F 0.43 tolerated_low_confidence(0.07) benign(0.365) TCGA-FW-A3R5-06 X 92928407 92928407 G A NAP1L3 5'UTR 0.50 TCGA-FW-A3R5-06 X 92964424 92964424 G A FAM133A Silent p.G2G 0.42 TCGA-FW-A3R5-06 X 92964696 92964696 G A FAM133A Missense_Mutation p.R93K 0.57 tolerated_low_confidence(0.84) unknown(0) TCGA-FW-A3R5-06 X 92965310 92965310 T A FAM133A 3'UTR 0.58 TCGA-FW-A3R5-06 X 96213026 96213026 C T DIAPH2 Missense_Mutation p.P605L 0.59 tolerated(0.78) unknown(0) TCGA-FW-A3R5-06 X 9864270 9864270 C T SHROOM2 Silent p.L774L 0.62 TCGA-FW-A3R5-06 X 9864374 9864374 C T SHROOM2 Missense_Mutation p.P809L 0.67 tolerated(0.64) benign(0) TCGA-FW-A3R5-06 X 99551337 99551337 G A PCDH19 Silent p.L1129L 0.54 TCGA-FW-A3R5-06 X 99551856 99551856 G A PCDH19 Missense_Mutation p.H956Y 0.54 deleterious(0.01) possibly_damaging(0.709) TCGA-FW-A3R5-06 X 99658619 99658619 C T PCDH19 Missense_Mutation p.G731R 0.69 tolerated_low_confidence(0.66) benign(0) TCGA-FW-A3R5-06 X 99661607 99661607 G A PCDH19 Silent p.S663S 0.30 TCGA-FW-A3R5-06 X 99662102 99662102 C T PCDH19 Silent p.R498R 0.12 TCGA-FW-A3R5-06 X 99662311 99662311 C T PCDH19 Missense_Mutation p.G429S 0.14 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 X 99917296 99917296 G A SRPX2 Missense_Mutation p.R96Q 0.18 tolerated(0.07) possibly_damaging(0.897) TCGA-FW-A3R5-06 X 99925834 99925834 C T SRPX2 Silent p.F416F 0.63 TCGA-FW-A3R5-06 X 99934391 99934391 C T SYTL4 Missense_Mutation p.G526E 0.67 deleterious(0) probably_damaging(0.949) TCGA-FW-A3R5-06 Y 14889987 14889987 C T USP9Y Missense_Mutation p.R892W 0.47 deleterious(0) probably_damaging(0.993) TCGA-FW-A3R5-06 Y 16734078 16734078 C T NLGN4Y Silent p.L27L 0.28 TCGA-FW-A3R5-06 Y 16734107 16734107 C T NLGN4Y Silent p.F36F 0.48 TCGA-FW-A3R5-06 Y 16953232 16953232 G A NLGN4Y 3'UTR 0.38 TCGA-FW-A3R5-06 Y 21635879 21635879 C T BCORP1 RNA 0.60 TCGA-FW-A3R5-06 Y 21878326 21878326 G C KDM5D Missense_Mutation p.R624G 0.65 deleterious(0) probably_damaging(0.943) TCGA-FW-A3R5-06 Y 21903332 21903332 G A KDM5D Missense_Mutation p.R132C 0.38 deleterious(0.03) probably_damaging(1) TCGA-FW-A3R5-06 Y 23557655 23557655 C T RBMY2EP RNA 0.75 TCGA-FW-A3R5-06 Y 24460745 24460745 G A RBMY2FP RNA 0.44 TCGA-FW-A3R5-06 Y 3447488 3447488 G A TGIF2LY Nonsense_Mutation p.W68* 0.20 TCGA-FW-A3R5-06 Y 3447880 3447880 C T TGIF2LY 3'UTR 0.56 TCGA-FW-A3R5-06 Y 4924939 4924939 G A PCDH11Y Silent p.R25R 0.39 TCGA-FW-A3R5-06 Y 4925457 4925457 C T PCDH11Y Missense_Mutation p.P198L 0.57 tolerated(0.07) probably_damaging(0.962) TCGA-FW-A3R5-06 Y 4966352 4966352 G A PCDH11Y Missense_Mutation p.D245N 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3R5-06 Y 4968065 4968065 G A PCDH11Y Missense_Mutation p.E816K 0.19 tolerated(0.36) possibly_damaging(0.889) TCGA-FW-A3R5-06 Y 5605450 5605450 C T PCDH11Y Silent p.L1164L 0.67 TCGA-FW-A3R5-06 Y 6932137 6932137 C T TBL1Y Missense_Mutation p.P135L 0.63 tolerated(0.21) benign(0.001) TCGA-FW-A3R5-06 Y 6939829 6939829 G A TBL1Y Nonsense_Mutation p.W284* 0.32 TCGA-FW-A3R5-06 Y 6948775 6948775 C T TBL1Y Missense_Mutation p.P320S 0.57 tolerated(0.06) probably_damaging(0.998) TCGA-FW-A3R5-06 Y 6954416 6954416 G A TBL1Y Missense_Mutation p.G413E 0.48 deleterious(0) probably_damaging(1) TCGA-FW-A3R5-06 Y 7239831 7239831 C T PRKY RNA 0.62 TCGA-FW-A3R5-06 Y 8657192 8657192 C T TTTY11 RNA 0.43 TCGA-FW-A3R5-06 Y 9305956 9305956 C T TSPY1 Silent p.F204F 0.13 TCGA-FW-A3R5-06 Y 9305977 9305977 C T TSPY1 Silent p.F211F 0.14 TCGA-FW-A3TU-06 10 102568881 102568881 C T PAX2 Silent p.S292S 0.75 TCGA-FW-A3TU-06 10 106130743 106130743 G A CCDC147 Missense_Mutation p.E341K 0.74 deleterious(0) possibly_damaging(0.863) TCGA-FW-A3TU-06 10 119044226 119044226 G A PDZD8 Missense_Mutation p.S673L 0.69 tolerated(0.34) benign(0.02) TCGA-FW-A3TU-06 10 126715535 126715535 G A CTBP2 Missense_Mutation p.P265L 0.69 deleterious_low_confidence(0.03) benign(0.01) TCGA-FW-A3TU-06 10 16556446 16556446 C T C1QL3 3'UTR 0.46 TCGA-FW-A3TU-06 10 21098807 21098807 C T NEBL Missense_Mutation p.D847N 0.39 tolerated(0.92) possibly_damaging(0.816) TCGA-FW-A3TU-06 10 22608952 22608952 G A COMMD3 3'UTR 0.41 TCGA-FW-A3TU-06 10 24835206 24835206 G A KIAA1217 Missense_Mutation p.G1929R 0.48 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 10 26534898 26534898 G A GAD2 Missense_Mutation p.D297N 0.76 tolerated(0.07) possibly_damaging(0.814) TCGA-FW-A3TU-06 10 26939635 26939635 G A LINC00202-2 RNA 0.77 TCGA-FW-A3TU-06 10 28151401 28151401 G A ARMC4 Missense_Mutation p.H921Y 0.31 deleterious(0.03) benign(0.142) TCGA-FW-A3TU-06 10 45465704 45465704 C T RASSF4 Silent p.S18S 0.28 TCGA-FW-A3TU-06 10 48429461 48429461 C T GDF10 Nonsense_Mutation p.W142* 0.39 TCGA-FW-A3TU-06 10 50723953 50723953 A T ERCC6-PGBD3 Missense_Mutation p.I871N 0.33 tolerated_low_confidence(0.05) unknown(0) TCGA-FW-A3TU-06 10 5496342 5496342 G A NET1 Missense_Mutation p.E295K 0.38 deleterious(0.02) probably_damaging(1) TCGA-FW-A3TU-06 10 55569128 55569128 C T PCDH15 Missense_Mutation p.G495E 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3TU-06 10 55626539 55626539 C T PCDH15 Missense_Mutation p.G1194R 0.33 tolerated(0.07) probably_damaging(0.992) TCGA-FW-A3TU-06 10 5777438 5777438 C A FAM208B Missense_Mutation p.S459Y 0.38 deleterious(0.05) possibly_damaging(0.906) TCGA-FW-A3TU-06 10 61413644 61413644 G A SLC16A9 Silent p.I380I 0.43 TCGA-FW-A3TU-06 10 70748821 70748821 C T KIAA1279 Missense_Mutation p.A78V 0.54 tolerated(0.28) benign(0.001) TCGA-FW-A3TU-06 10 72100313 72100313 G A LRRC20 Silent p.L76L 0.35 TCGA-FW-A3TU-06 10 72292494 72292494 G A PALD1 Missense_Mutation p.E251K 0.39 deleterious(0.03) benign(0.059) TCGA-FW-A3TU-06 10 73051547 73051547 C T UNC5B Silent p.C551C 0.27 TCGA-FW-A3TU-06 10 75135928 75135928 C T ANXA7 Silent p.K464K 0.50 TCGA-FW-A3TU-06 10 95385332 95385332 G A PDE6C Missense_Mutation p.E289K 0.76 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A3TU-06 10 99126639 99126639 G A RRP12 Silent p.P1025P 0.70 TCGA-FW-A3TU-06 11 100211920 100211920 G A CNTN5 Missense_Mutation p.E1005K 0.35 tolerated(0.07) benign(0.403) TCGA-FW-A3TU-06 11 100998414 100998414 T C PGR Missense_Mutation p.Y463C 0.59 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 11 103173935 103173935 C T DYNC2H1 Missense_Mutation p.L3744F 0.31 probably_damaging(0.997) TCGA-FW-A3TU-06 11 103908033 103908033 G A DDI1 Silent p.K161K 0.30 TCGA-FW-A3TU-06 11 103908034 103908034 G A DDI1 Missense_Mutation p.E162K 0.30 deleterious(0.01) possibly_damaging(0.627) TCGA-FW-A3TU-06 11 108388966 108388966 G A EXPH5 Silent p.F209F 0.40 TCGA-FW-A3TU-06 11 109294853 109294853 C T C11orf87 Missense_Mutation p.P165L 0.44 deleterious_low_confidence(0.01) benign(0.077) TCGA-FW-A3TU-06 11 1099444 1099444 C T MUC2 Silent p.L2429L 0.33 TCGA-FW-A3TU-06 11 111636104 111636104 C T PPP2R1B Missense_Mutation p.R40Q 0.67 deleterious(0) probably_damaging(0.949) TCGA-FW-A3TU-06 11 117376191 117376191 C T DSCAML1 Silent p.R740R 0.62 TCGA-FW-A3TU-06 11 118047137 118047137 C T SCN2B Missense_Mutation p.D4N 0.59 tolerated_low_confidence(0.38) benign(0) TCGA-FW-A3TU-06 11 118377096 118377096 G A KMT2A Missense_Mutation p.G3497R 0.64 benign(0.002) TCGA-FW-A3TU-06 11 118377097 118377097 G A KMT2A Missense_Mutation p.G3497E 0.64 benign(0.075) TCGA-FW-A3TU-06 11 123624625 123624625 G A OR6X1 Missense_Mutation p.T201I 0.44 deleterious(0) possibly_damaging(0.842) TCGA-FW-A3TU-06 11 123900818 123900818 C T OR10G8 Silent p.F163F 0.34 TCGA-FW-A3TU-06 11 128359223 128359223 C T ETS1 Missense_Mutation p.G166E 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 11 129993624 129993624 G T APLP2 Missense_Mutation p.R347M 0.39 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TU-06 11 132290185 132290185 G A OPCML Missense_Mutation p.P314S 0.49 deleterious(0.04) possibly_damaging(0.831) TCGA-FW-A3TU-06 11 15212338 15212338 C T INSC Missense_Mutation p.P271L 0.37 tolerated(0.07) benign(0.076) TCGA-FW-A3TU-06 11 17432173 17432173 G A ABCC8 Missense_Mutation p.H862Y 0.37 deleterious(0) probably_damaging(0.95) TCGA-FW-A3TU-06 11 17483187 17483187 G A ABCC8 Silent p.I255I 0.44 TCGA-FW-A3TU-06 11 2606501 2606501 C T KCNQ1 Silent p.F364F 0.38 TCGA-FW-A3TU-06 11 33795990 33795990 G A FBXO3 Silent p.T18T 0.21 TCGA-FW-A3TU-06 11 33795991 33795991 G A FBXO3 Missense_Mutation p.T18I 0.21 deleterious(0.04) possibly_damaging(0.711) TCGA-FW-A3TU-06 11 34180931 34180931 A T ABTB2 Missense_Mutation p.F870Y 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3TU-06 11 34502425 34502425 C T ELF5 Missense_Mutation p.E199K 0.38 tolerated(0.55) benign(0.074) TCGA-FW-A3TU-06 11 4389419 4389419 G A OR52B4 Missense_Mutation p.S36F 0.41 deleterious(0.05) benign(0.076) TCGA-FW-A3TU-06 11 45827680 45827680 G A SLC35C1 Missense_Mutation p.D110N 0.42 tolerated(0.15) benign(0.055) TCGA-FW-A3TU-06 11 45924250 45924250 C T MAPK8IP1 Missense_Mutation p.S311F 0.35 deleterious(0) probably_damaging(0.968) TCGA-FW-A3TU-06 11 45924251 45924251 C T MAPK8IP1 Silent p.S311S 0.35 TCGA-FW-A3TU-06 11 47381520 47381520 C T SPI1 Missense_Mutation p.E73K 0.48 deleterious(0.01) possibly_damaging(0.574) TCGA-FW-A3TU-06 11 55111082 55111082 C T OR4A16 Nonsense_Mutation p.R136* 0.48 TCGA-FW-A3TU-06 11 55339891 55339891 G A OR4C16 Missense_Mutation p.M96I 0.33 tolerated(0.18) benign(0.002) TCGA-FW-A3TU-06 11 55541018 55541018 C T OR5D13 Silent p.F35F 0.34 TCGA-FW-A3TU-06 11 55999642 55999642 C T OR5T2 Missense_Mutation p.M340I 0.45 tolerated(0.29) benign(0.003) TCGA-FW-A3TU-06 11 56086224 56086224 C T OR8K3 Missense_Mutation p.P148S 0.38 tolerated_low_confidence(0.09) benign(0.083) TCGA-FW-A3TU-06 11 56143306 56143306 G A OR8U1 Silent p.V69V 0.35 TCGA-FW-A3TU-06 11 56230398 56230398 C T OR5M9 Nonsense_Mutation p.W160* 0.40 TCGA-FW-A3TU-06 11 56258814 56258814 G A OR5M8 Silent p.F11F 0.38 TCGA-FW-A3TU-06 11 56310120 56310120 T C OR5M11 Missense_Mutation p.N205S 0.48 tolerated(0.05) probably_damaging(0.956) TCGA-FW-A3TU-06 11 56344286 56344286 C T OR5M10 Missense_Mutation p.M304I 0.37 tolerated(0.47) benign(0) TCGA-FW-A3TU-06 11 57118326 57118326 G A P2RX3 Missense_Mutation p.D266N 0.45 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 11 58892779 58892779 G A FAM111B Silent p.P403P 0.39 TCGA-FW-A3TU-06 11 59211109 59211109 C T OR5A1 Silent p.F156F 0.39 TCGA-FW-A3TU-06 11 60785401 60785401 C T CD6 Missense_Mutation p.P585S 0.33 tolerated(0.49) benign(0.026) TCGA-FW-A3TU-06 11 61026747 61026747 G A VWCE Silent p.S756S 0.34 TCGA-FW-A3TU-06 11 61121425 61121425 G A CYB561A3 Missense_Mutation p.P92L 0.46 deleterious(0.02) possibly_damaging(0.888) TCGA-FW-A3TU-06 11 6191021 6191021 G A OR52B2 Missense_Mutation p.S179F 0.27 deleterious(0) probably_damaging(0.983) TCGA-FW-A3TU-06 11 62290459 62290459 G A AHNAK Silent p.P3810P 0.35 TCGA-FW-A3TU-06 11 63064904 63064904 C T SLC22A10 Silent p.I212I 0.36 TCGA-FW-A3TU-06 11 63233660 63233660 G A HRASLS5 Silent p.I223I 0.37 TCGA-FW-A3TU-06 11 63679791 63679791 C T RCOR2 Missense_Mutation p.E415K 0.37 tolerated(0.06) unknown(0) TCGA-FW-A3TU-06 11 64359217 64359217 C T SLC22A12 Silent p.I63I 0.52 TCGA-FW-A3TU-06 11 64593991 64593991 G A CDC42BPG Missense_Mutation p.S1517F 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3TU-06 11 65266758 65266758 T C MALAT1 RNA 0.41 TCGA-FW-A3TU-06 11 65269048 65269048 C T MALAT1 RNA 0.45 TCGA-FW-A3TU-06 11 65304507 65304507 G C SCYL1 Missense_Mutation p.G623R 0.08 tolerated(0.44) benign(0.001) TCGA-FW-A3TU-06 11 65343827 65343827 C T EHBP1L1 Silent p.F18F 0.27 TCGA-FW-A3TU-06 11 66190156 66190156 C T NPAS4 Missense_Mutation p.R148C 0.28 deleterious(0.05) probably_damaging(0.976) TCGA-FW-A3TU-06 11 69625098 69625098 G A FGF3 Missense_Mutation p.S232F 0.37 deleterious_low_confidence(0.01) benign(0.047) TCGA-FW-A3TU-06 11 72299936 72299936 C T PDE2A Missense_Mutation p.S321N 0.31 tolerated(0.44) benign(0.001) TCGA-FW-A3TU-06 11 73076546 73076546 C T ARHGEF17 Missense_Mutation p.P1888S 0.30 tolerated(0.4) benign(0.002) TCGA-FW-A3TU-06 11 73076547 73076547 C T ARHGEF17 Missense_Mutation p.P1888L 0.30 tolerated(0.05) benign(0.034) TCGA-FW-A3TU-06 11 7335133 7335133 G A SYT9 Silent p.R335R 0.48 TCGA-FW-A3TU-06 11 73748721 73748721 G A C2CD3 Nonsense_Mutation p.Q1895* 0.19 TCGA-FW-A3TU-06 11 7507224 7507224 C G OLFML1 Missense_Mutation p.R40G 0.38 tolerated(0.48) benign(0.062) TCGA-FW-A3TU-06 11 84028212 84028212 C T DLG2 Intron 0.38 TCGA-FW-A3TU-06 11 8486364 8486364 G A STK33 Silent p.I115I 0.38 TCGA-FW-A3TU-06 11 8947244 8947244 C T C11orf16 Missense_Mutation p.E324K 0.40 tolerated(0.16) benign(0.303) TCGA-FW-A3TU-06 11 92600267 92600267 G A FAT3 Missense_Mutation p.E4007K 0.40 probably_damaging(0.978) TCGA-FW-A3TU-06 11 93796821 93796821 C T HEPHL1 Missense_Mutation p.S188L 0.47 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 11 9450702 9450702 C A IPO7 Missense_Mutation p.A517D 0.38 deleterious(0) probably_damaging(0.979) TCGA-FW-A3TU-06 12 100453015 100453015 C T UHRF1BP1L Silent p.L680L 0.68 TCGA-FW-A3TU-06 12 101493406 101493406 C T ANO4 Missense_Mutation p.P651L 0.76 tolerated(0.24) benign(0.009) TCGA-FW-A3TU-06 12 10168346 10168346 G A CLEC12B Intron 0.37 TCGA-FW-A3TU-06 12 104054126 104054126 G A STAB2 Silent p.L584L 0.68 TCGA-FW-A3TU-06 12 106460745 106460745 G A NUAK1 Silent p.F607F 0.74 TCGA-FW-A3TU-06 12 110206464 110206464 T C FAM222A Missense_Mutation p.Y244H 0.50 tolerated(0.46) probably_damaging(0.994) TCGA-FW-A3TU-06 12 111080194 111080194 G C TCTN1 Missense_Mutation p.R444T 0.56 deleterious(0.02) benign(0.23) TCGA-FW-A3TU-06 12 112187078 112187078 C T ACAD10 Missense_Mutation p.P947S 0.75 tolerated(0.06) probably_damaging(0.996) TCGA-FW-A3TU-06 12 112187079 112187079 C T ACAD10 Missense_Mutation p.P947L 0.74 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 12 112630426 112630426 G A HECTD4 Missense_Mutation p.P2931L 0.85 possibly_damaging(0.661) TCGA-FW-A3TU-06 12 119961555 119961555 G A CCDC60 Silent p.R387R 0.63 TCGA-FW-A3TU-06 12 124283897 124283897 G A DNAH10 Missense_Mutation p.M638I 0.66 benign(0.099) TCGA-FW-A3TU-06 12 124824946 124824946 G A NCOR2 Silent p.S1794S 0.78 TCGA-FW-A3TU-06 12 124824947 124824947 G A NCOR2 Missense_Mutation p.S1794F 0.75 possibly_damaging(0.706) TCGA-FW-A3TU-06 12 12966263 12966263 C T DDX47 5'Flank 0.38 TCGA-FW-A3TU-06 12 132262764 132262764 G T SFSWAP Missense_Mutation p.R766L 0.70 deleterious_low_confidence(0) benign(0.433) TCGA-FW-A3TU-06 12 133257804 133257804 C T POLE Missense_Mutation p.D42N 0.65 tolerated(0.07) possibly_damaging(0.53) TCGA-FW-A3TU-06 12 1702393 1702393 G A FBXL14 Silent p.R280R 0.46 TCGA-FW-A3TU-06 12 20799775 20799775 G A PDE3A Missense_Mutation p.G819E 0.37 deleterious(0.01) possibly_damaging(0.636) TCGA-FW-A3TU-06 12 20799776 20799776 G A PDE3A Silent p.G819G 0.37 TCGA-FW-A3TU-06 12 21757460 21757460 G A GYS2 Missense_Mutation p.L23F 0.39 tolerated(0.71) probably_damaging(0.997) TCGA-FW-A3TU-06 12 22068759 22068759 A G ABCC9 Missense_Mutation p.V220A 0.48 tolerated(0.1) benign(0.279) TCGA-FW-A3TU-06 12 27467549 27467549 C T STK38L Silent p.I210I 0.36 TCGA-FW-A3TU-06 12 27933250 27933250 C T KLHL42 5'UTR 0.33 TCGA-FW-A3TU-06 12 305972 305972 G A SLC6A12 Silent p.F384F 0.36 TCGA-FW-A3TU-06 12 41967339 41967339 G A PDZRN4 Missense_Mutation p.E920K 0.66 deleterious(0) probably_damaging(0.993) TCGA-FW-A3TU-06 12 48371849 48371849 G A COL2A1 Missense_Mutation p.P1019S 0.48 unknown(0) TCGA-FW-A3TU-06 12 49717509 49717509 G A TROAP Missense_Mutation p.V40M 0.31 tolerated(0.09) benign(0.157) TCGA-FW-A3TU-06 12 49717510 49717510 T A TROAP Missense_Mutation p.V40E 0.31 tolerated(0.52) benign(0.004) TCGA-FW-A3TU-06 12 5153888 5153888 C T KCNA5 Missense_Mutation p.S192F 0.45 deleterious(0) probably_damaging(0.913) TCGA-FW-A3TU-06 12 5153889 5153889 C T KCNA5 Silent p.S192S 0.44 TCGA-FW-A3TU-06 12 52285149 52285149 C T ANKRD33 3'UTR 0.47 TCGA-FW-A3TU-06 12 52822256 52822256 G A KRT75 Missense_Mutation p.S389F 0.40 deleterious(0.02) possibly_damaging(0.454) TCGA-FW-A3TU-06 12 52827650 52827650 C G KRT75 Missense_Mutation p.A147P 0.38 deleterious(0.01) benign(0.222) TCGA-FW-A3TU-06 12 52827652 52827652 C G KRT75 Missense_Mutation p.R146P 0.38 deleterious(0) probably_damaging(0.947) TCGA-FW-A3TU-06 12 52967407 52967407 C T KRT74 Missense_Mutation p.S52N 0.48 tolerated(0.84) benign(0.007) TCGA-FW-A3TU-06 12 53201466 53201466 G A KRT4 Silent p.I436I 0.34 TCGA-FW-A3TU-06 12 53696850 53696850 C T C12orf10 Missense_Mutation p.P121L 0.37 deleterious(0.01) benign(0.085) TCGA-FW-A3TU-06 12 542364 542364 G A CCDC77 Missense_Mutation p.G233R 0.39 deleterious(0.01) benign(0.156) TCGA-FW-A3TU-06 12 54799659 54799659 C A ITGA5 Nonsense_Mutation p.E320* 0.36 TCGA-FW-A3TU-06 12 54917207 54917207 C T NCKAP1L Silent p.I636I 0.38 TCGA-FW-A3TU-06 12 55420715 55420715 G A NEUROD4 Silent p.Q164Q 0.42 TCGA-FW-A3TU-06 12 55758928 55758928 C T OR6C75 Missense_Mutation p.L12F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-FW-A3TU-06 12 56712947 56712947 G A PAN2 Missense_Mutation p.L1101F 0.36 deleterious(0.01) benign(0.392) TCGA-FW-A3TU-06 12 57005372 57005372 A T BAZ2A Missense_Mutation p.L554H 0.38 deleterious(0) probably_damaging(0.959) TCGA-FW-A3TU-06 12 57005373 57005373 G T BAZ2A Missense_Mutation p.L554I 0.38 tolerated(0.29) possibly_damaging(0.559) TCGA-FW-A3TU-06 12 57579590 57579590 C T LRP1 Missense_Mutation p.T2247I 0.36 benign(0.035) TCGA-FW-A3TU-06 12 58007140 58007140 C T ARHGEF25 Nonsense_Mutation p.Q175* 0.37 TCGA-FW-A3TU-06 12 58174276 58174276 C T METTL21B Silent p.I176I 0.34 TCGA-FW-A3TU-06 12 62784970 62784970 C T USP15 Missense_Mutation p.S665F 0.44 tolerated(0.1) possibly_damaging(0.87) TCGA-FW-A3TU-06 12 6692231 6692231 G A CHD4 Missense_Mutation p.S1370L 0.48 deleterious(0.02) possibly_damaging(0.849) TCGA-FW-A3TU-06 12 70004639 70004639 G A LRRC10 5'UTR 0.29 TCGA-FW-A3TU-06 12 70724135 70724135 C T CNOT2 Missense_Mutation p.P152L 0.44 deleterious(0.05) benign(0.022) TCGA-FW-A3TU-06 12 7649675 7649675 C T CD163 Missense_Mutation p.R278K 0.35 tolerated(0.17) possibly_damaging(0.617) TCGA-FW-A3TU-06 12 7966901 7966901 G A SLC2A14 3'UTR 0.10 TCGA-FW-A3TU-06 12 8073998 8073998 G A SLC2A3 3'UTR 0.20 TCGA-FW-A3TU-06 12 8687402 8687402 G A CLEC4E Silent p.F164F 0.38 TCGA-FW-A3TU-06 12 8991815 8991815 G A A2ML1 Silent p.G359G 0.29 TCGA-FW-A3TU-06 12 9251204 9251204 G A A2M Missense_Mutation p.S617L 0.27 tolerated(0.07) benign(0.009) TCGA-FW-A3TU-06 13 106124924 106124924 G A DAOA Silent p.R57R 0.25 TCGA-FW-A3TU-06 13 113174322 113174322 G A TUBGCP3 Missense_Mutation p.R587C 0.56 deleterious(0) possibly_damaging(0.846) TCGA-FW-A3TU-06 13 20024225 20024225 C T TPTE2 Missense_Mutation p.G322R 0.51 deleterious(0.04) probably_damaging(0.983) TCGA-FW-A3TU-06 13 20067021 20067021 C T TPTE2 Missense_Mutation p.G30R 0.09 tolerated_low_confidence(0.21) possibly_damaging(0.694) TCGA-FW-A3TU-06 13 25265186 25265186 C T ATP12A Missense_Mutation p.A295V 0.65 deleterious(0.03) possibly_damaging(0.623) TCGA-FW-A3TU-06 13 25265187 25265187 C T ATP12A Silent p.A295A 0.64 TCGA-FW-A3TU-06 13 25284645 25284645 C T ATP12A Silent p.F943F 0.35 TCGA-FW-A3TU-06 13 32676119 32676119 C T FRY Missense_Mutation p.S97F 0.45 deleterious(0.01) benign(0.23) TCGA-FW-A3TU-06 13 33704223 33704223 G T STARD13 Silent p.S197S 0.24 TCGA-FW-A3TU-06 13 36909302 36909302 A T SPG20 Silent p.I222I 0.26 TCGA-FW-A3TU-06 13 48936978 48936978 C G RB1 Nonsense_Mutation p.S249* 0.56 TCGA-FW-A3TU-06 13 52864092 52864092 A G RP11-248G5.8 RNA 0.48 TCGA-FW-A3TU-06 13 92345849 92345849 C T GPC5 Missense_Mutation p.S245F 0.53 deleterious(0) probably_damaging(0.971) TCGA-FW-A3TU-06 13 97639852 97639852 C T OXGR1 Silent p.V54V 0.33 TCGA-FW-A3TU-06 14 100613236 100613236 C T DEGS2 Silent p.K278K 0.39 TCGA-FW-A3TU-06 14 101348391 101348391 G C RTL1 Missense_Mutation p.P912R 0.37 deleterious(0.03) benign(0.042) TCGA-FW-A3TU-06 14 103410646 103410646 G A CDC42BPB Silent p.L1330L 0.33 TCGA-FW-A3TU-06 14 106174163 106174163 G A IGHA1 Missense_Mutation p.P209L 0.23 deleterious(0.05) benign(0.312) TCGA-FW-A3TU-06 14 106691944 106691944 C T IGHV3-21 Missense_Mutation p.G27E 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.537) TCGA-FW-A3TU-06 14 106829597 106829597 C G IGHV4-34 Silent p.A122A 0.35 TCGA-FW-A3TU-06 14 107034877 107034877 C T IGHV5-51 Missense_Mutation p.G68E 0.29 deleterious(0.03) possibly_damaging(0.683) TCGA-FW-A3TU-06 14 107179246 107179246 G A IGHV2-70 Missense_Mutation p.S6F 0.30 tolerated(0.91) benign(0.001) TCGA-FW-A3TU-06 14 20296333 20296333 C T OR4N2 Silent p.T242T 0.50 TCGA-FW-A3TU-06 14 20528298 20528298 C T OR4L1 Missense_Mutation p.S32F 0.32 tolerated(0.18) benign(0.005) TCGA-FW-A3TU-06 14 21464746 21464746 G T METTL17 Nonsense_Mutation p.E381* 0.43 TCGA-FW-A3TU-06 14 21490272 21490272 A G NDRG2 Missense_Mutation p.V98A 0.37 deleterious(0.02) possibly_damaging(0.622) TCGA-FW-A3TU-06 14 22951289 22951289 C G TRAJ54 Silent p.A5A 0.38 TCGA-FW-A3TU-06 14 23346513 23346513 C G LRP10 Missense_Mutation p.P640R 0.39 deleterious(0.01) possibly_damaging(0.546) TCGA-FW-A3TU-06 14 23457125 23457125 C T C14orf93 Missense_Mutation p.S395N 0.43 deleterious_low_confidence(0.01) benign(0.278) TCGA-FW-A3TU-06 14 23884229 23884229 C T MYH7 Missense_Mutation p.R1845Q 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3TU-06 14 24684863 24684863 C T MDP1 Missense_Mutation p.G35E 0.47 deleterious(0.02) benign(0.177) TCGA-FW-A3TU-06 14 24901602 24901602 C T KHNYN Missense_Mutation p.R379W 0.46 deleterious(0.03) unknown(0) TCGA-FW-A3TU-06 14 35560353 35560353 G A PPP2R3C Silent p.L346L 0.31 TCGA-FW-A3TU-06 14 39787157 39787157 C T CTAGE5 Missense_Mutation p.R473W 0.36 tolerated(0.08) benign(0.099) TCGA-FW-A3TU-06 14 47120739 47120739 G A RPL10L Silent p.A67A 0.37 TCGA-FW-A3TU-06 14 47120740 47120740 G A RPL10L Missense_Mutation p.A67V 0.36 deleterious(0) possibly_damaging(0.868) TCGA-FW-A3TU-06 14 51225337 51225337 T A NIN Missense_Mutation p.E804V 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 14 60976584 60976584 C A SIX6 Missense_Mutation p.S156R 0.11 tolerated(0.87) benign(0.013) TCGA-FW-A3TU-06 14 64724025 64724025 T A ESR2 Missense_Mutation p.E337V 0.32 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 14 67940434 67940434 G A TMEM229B Silent p.G69G 0.62 TCGA-FW-A3TU-06 14 68029230 68029230 C T PLEKHH1 Silent p.L294L 0.34 TCGA-FW-A3TU-06 14 70238237 70238237 C T SRSF5 3'UTR 0.43 TCGA-FW-A3TU-06 14 70515509 70515509 G A SLC8A3 Silent p.F794F 0.23 TCGA-FW-A3TU-06 14 71059684 71059684 G A MED6 Nonsense_Mutation p.Q127* 0.43 TCGA-FW-A3TU-06 14 71227756 71227756 G A MAP3K9 Missense_Mutation p.R322W 0.41 deleterious(0) probably_damaging(0.997) TCGA-FW-A3TU-06 14 72152312 72152312 G A SIPA1L1 Missense_Mutation p.R1113Q 0.42 tolerated(0.12) benign(0.062) TCGA-FW-A3TU-06 14 72200466 72200466 C T SIPA1L1 Silent p.L1670L 0.25 TCGA-FW-A3TU-06 14 74424796 74424796 C T ENTPD5 3'Flank 0.45 TCGA-FW-A3TU-06 14 75514072 75514072 T C MLH3 Missense_Mutation p.K763E 0.31 deleterious(0) possibly_damaging(0.493) TCGA-FW-A3TU-06 14 75904815 75904815 G T JDP2 Silent p.V75V 0.36 TCGA-FW-A3TU-06 14 76906068 76906068 G T ESRRB Missense_Mutation p.K124N 0.43 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TU-06 14 76957851 76957851 C T ESRRB Silent p.I283I 0.46 TCGA-FW-A3TU-06 14 77743784 77743784 G A POMT2 Missense_Mutation p.P730S 0.39 tolerated(0.14) benign(0.299) TCGA-FW-A3TU-06 14 77920439 77920439 G A VIPAS39 Missense_Mutation p.R3W 0.31 deleterious_low_confidence(0.03) probably_damaging(0.924) TCGA-FW-A3TU-06 14 78399663 78399679 CGTGTGAAGGGGTTGAA - ADCK1 Frame_Shift_Del p.R501Afs*3 0.21 TCGA-FW-A3TU-06 14 88895799 88895799 C T SPATA7 Silent p.S340S 0.35 TCGA-FW-A3TU-06 14 92139273 92139273 T C CATSPERB Missense_Mutation p.T356A 0.34 tolerated(0.75) benign(0.006) TCGA-FW-A3TU-06 14 94160746 94160746 C T UNC79 Silent p.T2374T 0.43 TCGA-FW-A3TU-06 14 95057149 95057149 C A SERPINA5 Silent p.L318L 0.43 TCGA-FW-A3TU-06 15 100649297 100649297 G A ADAMTS17 Missense_Mutation p.S638L 0.76 tolerated(0.3) benign(0.004) TCGA-FW-A3TU-06 15 20657730 20657730 G A HERC2P3 RNA 0.43 TCGA-FW-A3TU-06 15 25958930 25958930 G A ATP10A Silent p.V745V 0.71 TCGA-FW-A3TU-06 15 40247829 40247829 G T EIF2AK4 Missense_Mutation p.L201F 0.76 tolerated(0.07) benign(0.078) TCGA-FW-A3TU-06 15 41120747 41120747 C T PPP1R14D Silent p.R31R 0.63 TCGA-FW-A3TU-06 15 41120748 41120748 C A PPP1R14D Missense_Mutation p.R31M 0.60 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FW-A3TU-06 15 41188156 41188156 G A VPS18 Missense_Mutation p.E38K 0.70 deleterious(0.01) possibly_damaging(0.566) TCGA-FW-A3TU-06 15 43851128 43851128 A C PPIP5K1 Missense_Mutation p.F1084V 0.68 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-FW-A3TU-06 15 45454088 45454088 C T DUOX1 Missense_Mutation p.R1337W 0.65 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 15 53908026 53908026 C T WDR72 Missense_Mutation p.D793N 0.62 deleterious(0) probably_damaging(0.992) TCGA-FW-A3TU-06 15 53994417 53994417 C T WDR72 Missense_Mutation p.D495N 0.62 tolerated(0.12) benign(0.319) TCGA-FW-A3TU-06 15 54626042 54626042 T A UNC13C Missense_Mutation p.F1524L 0.70 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-FW-A3TU-06 15 75902231 75902231 C G SNUPN Missense_Mutation p.R136S 0.23 deleterious(0.01) benign(0.024) TCGA-FW-A3TU-06 15 75902232 75902232 C T SNUPN Missense_Mutation p.R136K 0.26 tolerated(0.54) benign(0) TCGA-FW-A3TU-06 15 75980210 75980210 C T CSPG4 Missense_Mutation p.G1066S 0.78 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 15 78403582 78403582 G A CIB2 Silent p.L41L 0.83 TCGA-FW-A3TU-06 15 79051909 79051909 C T ADAMTS7 Missense_Mutation p.D1639N 0.67 tolerated(0.07) probably_damaging(0.998) TCGA-FW-A3TU-06 15 79058878 79058878 C T ADAMTS7 Silent p.L1125L 0.33 TCGA-FW-A3TU-06 15 81042009 81042009 C T ABHD17C Missense_Mutation p.T249I 0.45 deleterious(0) probably_damaging(0.986) TCGA-FW-A3TU-06 15 83395389 83395389 G A AC105339.2 5'Flank 0.82 TCGA-FW-A3TU-06 15 83933264 83933264 G A BNC1 Nonsense_Mutation p.Q247* 0.89 TCGA-FW-A3TU-06 15 83933329 83933329 C T BNC1 Missense_Mutation p.G225E 0.89 tolerated(1) possibly_damaging(0.572) TCGA-FW-A3TU-06 15 84582036 84582036 C T ADAMTSL3 Silent p.S631S 0.51 TCGA-FW-A3TU-06 15 85147237 85147237 G A ZSCAN2 Missense_Mutation p.E27K 0.91 deleterious(0.05) benign(0.023) TCGA-FW-A3TU-06 15 85326718 85326718 G A ZNF592 Missense_Mutation p.R271K 0.40 deleterious(0.04) probably_damaging(0.994) TCGA-FW-A3TU-06 15 88420231 88420231 C T NTRK3 Missense_Mutation p.E819K 0.81 deleterious(0) benign(0.292) TCGA-FW-A3TU-06 15 89869856 89869856 G A POLG Missense_Mutation p.P567S 0.43 tolerated(0.08) probably_damaging(1) TCGA-FW-A3TU-06 15 91448660 91448660 C T MAN2A2 Silent p.P104P 0.52 TCGA-FW-A3TU-06 15 91448661 91448661 C T MAN2A2 Missense_Mutation p.R105W 0.53 tolerated(0.07) benign(0.012) TCGA-FW-A3TU-06 15 95001394 95001394 G A MCTP2 Missense_Mutation p.R760K 0.36 tolerated(1) benign(0.23) TCGA-FW-A3TU-06 16 1129540 1129540 C T SSTR5 Silent p.I224I 0.69 TCGA-FW-A3TU-06 16 148260 148260 G A NPRL3 Silent p.S269S 0.72 TCGA-FW-A3TU-06 16 19020728 19020728 G A TMC7 Missense_Mutation p.R101Q 0.74 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 16 19070893 19070893 G A TMC7 Intron 0.79 TCGA-FW-A3TU-06 16 19451749 19451749 G A TMC5 Missense_Mutation p.G130E 0.70 tolerated_low_confidence(1) benign(0.004) TCGA-FW-A3TU-06 16 20439127 20439127 G A ACSM5 Silent p.P313P 0.68 TCGA-FW-A3TU-06 16 20959930 20959930 C T DNAH3 Missense_Mutation p.D3740N 0.43 deleterious(0.01) probably_damaging(1) TCGA-FW-A3TU-06 16 21245098 21245098 C T ANKS4B Silent p.L14L 0.61 TCGA-FW-A3TU-06 16 2577838 2577838 C T AMDHD2 Silent p.L160L 0.72 TCGA-FW-A3TU-06 16 28986625 28986625 C T SPNS1 Silent p.T51T 0.67 TCGA-FW-A3TU-06 16 3080524 3080524 C T CCDC64B Missense_Mutation p.G230S 0.71 tolerated(0.45) benign(0.058) TCGA-FW-A3TU-06 16 31434432 31434432 C T ITGAD Intron 0.63 TCGA-FW-A3TU-06 16 46782007 46782007 G T MYLK3 Missense_Mutation p.N33K 0.62 deleterious(0) possibly_damaging(0.825) TCGA-FW-A3TU-06 16 5127990 5127990 G A ALG1 Missense_Mutation p.G238S 0.69 tolerated(0.7) benign(0.019) TCGA-FW-A3TU-06 16 61687571 61687571 G A CDH8 Missense_Mutation p.P781S 0.78 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 16 62055071 62055071 C T CDH8 Silent p.P79P 0.60 TCGA-FW-A3TU-06 16 65022098 65022098 C T CDH11 Missense_Mutation p.D321N 0.69 tolerated(0.25) benign(0.111) TCGA-FW-A3TU-06 16 67211966 67211966 T A KIAA0895L Missense_Mutation p.I400F 0.67 deleterious(0) probably_damaging(0.949) TCGA-FW-A3TU-06 16 67682087 67682087 G A RLTPR Missense_Mutation p.G402R 0.63 tolerated_low_confidence(0.27) benign(0) TCGA-FW-A3TU-06 16 72110207 72110207 G A HPR Missense_Mutation p.G92R 0.64 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3TU-06 16 9857030 9857030 C A GRIN2A Missense_Mutation p.M1457I 0.59 tolerated(0.17) benign(0.016) TCGA-FW-A3TU-06 16 9857636 9857636 C T GRIN2A Silent p.Q1255Q 0.66 TCGA-FW-A3TU-06 17 10352264 10352264 C T MYH4 Missense_Mutation p.E1428K 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TU-06 17 10362664 10362664 G A MYH4 Silent p.F497F 0.42 TCGA-FW-A3TU-06 17 10408294 10408294 G A MYH1 Missense_Mutation p.P842S 0.44 deleterious(0.01) benign(0.2) TCGA-FW-A3TU-06 17 14248787 14248787 G A HS3ST3B1 Missense_Mutation p.G333S 0.24 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TU-06 17 15234840 15234840 G C TEKT3 Missense_Mutation p.N21K 0.27 tolerated(1) benign(0.002) TCGA-FW-A3TU-06 17 1582486 1582486 G A PRPF8 Missense_Mutation p.S475F 0.33 tolerated(0.1) possibly_damaging(0.774) TCGA-FW-A3TU-06 17 17699232 17699232 G A RAI1 Silent p.E990E 0.77 TCGA-FW-A3TU-06 17 21731427 21731427 G A UBBP4 Intron 0.41 TCGA-FW-A3TU-06 17 27442117 27442117 C T MYO18A Silent p.R773R 0.41 TCGA-FW-A3TU-06 17 28935539 28935539 C T SMURF2P1 RNA 0.40 TCGA-FW-A3TU-06 17 29556483 29556483 G A NF1 Silent p.Q950Q 0.29 TCGA-FW-A3TU-06 17 36483101 36483101 C T GPR179 Nonsense_Mutation p.W2117* 0.36 TCGA-FW-A3TU-06 17 36486604 36486604 C T GPR179 Missense_Mutation p.E950K 0.47 tolerated(0.06) probably_damaging(0.948) TCGA-FW-A3TU-06 17 36873814 36873814 C G MLLT6 Missense_Mutation p.S594C 0.44 deleterious(0) unknown(0) TCGA-FW-A3TU-06 17 38512373 38512373 G C RARA Silent p.G428G 0.57 TCGA-FW-A3TU-06 17 38925239 38925239 C T KRT26 Missense_Mutation p.R360Q 0.48 deleterious(0.01) probably_damaging(0.974) TCGA-FW-A3TU-06 17 39522860 39522860 G A KRT33B Silent p.S150S 0.43 TCGA-FW-A3TU-06 17 39728057 39728057 C T KRT9 Missense_Mutation p.R63K 0.50 tolerated_low_confidence(0.44) unknown(0) TCGA-FW-A3TU-06 17 40004308 40004308 G A KLHL10 Missense_Mutation p.D526N 0.38 tolerated(0.06) possibly_damaging(0.649) TCGA-FW-A3TU-06 17 4443223 4443223 G A MYBBP1A Silent p.P1158P 0.36 TCGA-FW-A3TU-06 17 4443224 4443224 G T MYBBP1A Missense_Mutation p.P1158H 0.36 deleterious(0.02) probably_damaging(0.978) TCGA-FW-A3TU-06 17 44632517 44632517 G A LRRC37A2 Splice_Site p.X1620_splice 0.22 TCGA-FW-A3TU-06 17 44632518 44632518 G A LRRC37A2 Silent p.R1620R 0.22 TCGA-FW-A3TU-06 17 45286503 45286503 G A MYL4 5'UTR 0.38 TCGA-FW-A3TU-06 17 4575311 4575311 G A PELP1 Missense_Mutation p.P992L 0.57 unknown(0) TCGA-FW-A3TU-06 17 47394690 47394690 C A ZNF652 Missense_Mutation p.G133V 0.35 deleterious(0.02) possibly_damaging(0.839) TCGA-FW-A3TU-06 17 47394691 47394691 C T ZNF652 Missense_Mutation p.G133R 0.35 deleterious(0) probably_damaging(0.941) TCGA-FW-A3TU-06 17 5084397 5084397 G A ZNF594 3'UTR 0.42 TCGA-FW-A3TU-06 17 5485360 5485360 G A NLRP1 Silent p.Y157Y 0.41 TCGA-FW-A3TU-06 17 55075817 55075817 A T SCPEP1 Nonsense_Mutation p.R318* 0.39 TCGA-FW-A3TU-06 17 58009056 58009056 C T RPS6KB1 Missense_Mutation p.P221S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TU-06 17 58725426 58725426 G A PPM1D Missense_Mutation p.E334K 0.30 tolerated(0.27) benign(0.052) TCGA-FW-A3TU-06 17 62021198 62021198 C T SCN4A Missense_Mutation p.D1309N 0.22 deleterious(0.02) benign(0.102) TCGA-FW-A3TU-06 17 62796645 62796645 G A PLEKHM1P RNA 0.38 TCGA-FW-A3TU-06 17 64881025 64881025 C T CACNG5 Intron 0.32 TCGA-FW-A3TU-06 17 65104717 65104717 G A HELZ Missense_Mutation p.H1539Y 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-FW-A3TU-06 17 6596477 6596477 C T SLC13A5 Silent p.R387R 0.26 TCGA-FW-A3TU-06 17 68171832 68171832 C T KCNJ2 Missense_Mutation p.R218W 0.49 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 17 6946862 6946862 G A SLC16A11 Missense_Mutation p.H15Y 0.43 tolerated_low_confidence(0.77) benign(0.01) TCGA-FW-A3TU-06 17 7257041 7257041 C T KCTD11 3'UTR 0.33 TCGA-FW-A3TU-06 17 72926463 72926463 C T OTOP2 Missense_Mutation p.P245S 0.33 deleterious(0) probably_damaging(0.997) TCGA-FW-A3TU-06 17 7344826 7344826 G A FGF11 Missense_Mutation p.C77Y 0.36 deleterious(0) probably_damaging(0.948) TCGA-FW-A3TU-06 17 7416820 7416820 C T POLR2A Missense_Mutation p.P1746L 0.43 unknown(0) TCGA-FW-A3TU-06 17 74287323 74287323 T A QRICH2 Missense_Mutation p.D996V 0.33 tolerated(0.2) benign(0.047) TCGA-FW-A3TU-06 17 74878370 74878370 C T MGAT5B Missense_Mutation p.P118S 0.50 tolerated(0.27) benign(0.002) TCGA-FW-A3TU-06 17 76354748 76354748 G A SOCS3 Silent p.P143P 0.31 TCGA-FW-A3TU-06 17 76490157 76490157 G A DNAH17 Silent p.S2109S 0.33 TCGA-FW-A3TU-06 17 7749462 7749462 C T KDM6B Silent p.L101L 0.32 TCGA-FW-A3TU-06 17 7749463 7749463 C T KDM6B Missense_Mutation p.R102W 0.32 unknown(0) TCGA-FW-A3TU-06 17 78318782 78318782 G T RNF213 Missense_Mutation p.R2216L 0.43 possibly_damaging(0.64) TCGA-FW-A3TU-06 17 78318783 78318783 G A RNF213 Silent p.R2216R 0.43 TCGA-FW-A3TU-06 17 79078504 79078504 G A BAIAP2 Silent p.E419E 0.31 TCGA-FW-A3TU-06 17 79663933 79663933 C T HGS Missense_Mutation p.A596V 0.38 deleterious(0.04) benign(0.072) TCGA-FW-A3TU-06 17 79663934 79663934 C T HGS Silent p.A596A 0.37 TCGA-FW-A3TU-06 17 79674406 79674406 G A MRPL12 3'UTR 0.55 TCGA-FW-A3TU-06 17 81042985 81042985 C T METRNL Silent p.S114S 0.31 TCGA-FW-A3TU-06 17 8249104 8249104 G A ODF4 Silent p.T236T 0.44 TCGA-FW-A3TU-06 17 8656447 8656447 C T SPDYE4 3'UTR 0.39 TCGA-FW-A3TU-06 18 20576416 20576416 A T RBBP8 Silent p.I673I 0.71 TCGA-FW-A3TU-06 18 22804758 22804758 G A ZNF521 Missense_Mutation p.H1042Y 0.70 deleterious(0) probably_damaging(0.993) TCGA-FW-A3TU-06 18 28576878 28576878 G A DSC3 Missense_Mutation p.S791F 0.61 deleterious(0) possibly_damaging(0.829) TCGA-FW-A3TU-06 18 28970753 28970753 G A DSG4 Missense_Mutation p.V218I 0.86 tolerated(0.09) benign(0.032) TCGA-FW-A3TU-06 18 30349830 30349830 G A KLHL14 Missense_Mutation p.S242F 0.79 deleterious(0) probably_damaging(0.973) TCGA-FW-A3TU-06 18 31326522 31326522 C T ASXL3 Missense_Mutation p.P2237L 0.69 probably_damaging(1) TCGA-FW-A3TU-06 18 33077797 33077797 G A INO80C Silent p.P14P 0.50 TCGA-FW-A3TU-06 18 44560610 44560610 G A TCEB3B Silent p.N342N 0.63 TCGA-FW-A3TU-06 18 52605227 52605227 G A CCDC68 Silent p.L102L 0.61 TCGA-FW-A3TU-06 18 59221779 59221779 G A CDH20 Missense_Mutation p.D753N 0.64 tolerated(1) benign(0.002) TCGA-FW-A3TU-06 18 61597289 61597289 G A SERPINB10 Silent p.Q167Q 0.68 TCGA-FW-A3TU-06 18 70205419 70205419 G A CBLN2 Missense_Mutation p.P223S 0.76 deleterious(0.01) benign(0.186) TCGA-FW-A3TU-06 19 10252841 10252841 G A DNMT1 Missense_Mutation p.L1058F 0.40 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TU-06 19 10397970 10397970 G A ICAM4 Silent p.P94P 0.06 TCGA-FW-A3TU-06 19 10433941 10433941 G A RAVER1 Missense_Mutation p.R337W 0.37 deleterious(0) benign(0.022) TCGA-FW-A3TU-06 19 11319449 11319449 G A DOCK6 Silent p.P1667P 0.42 TCGA-FW-A3TU-06 19 11727605 11727605 C T ZNF627 Missense_Mutation p.P96L 0.04 tolerated(0.11) possibly_damaging(0.879) TCGA-FW-A3TU-06 19 12856446 12856446 C T ASNA1 Missense_Mutation p.S161L 0.50 tolerated(0.08) probably_damaging(0.909) TCGA-FW-A3TU-06 19 13397435 13397435 G A CACNA1A Silent p.I1145I 0.31 TCGA-FW-A3TU-06 19 13941971 13941971 G A ZSWIM4 3'UTR 0.61 TCGA-FW-A3TU-06 19 13941972 13941972 G A ZSWIM4 3'UTR 0.56 TCGA-FW-A3TU-06 19 14024387 14024387 G A CC2D1A Silent p.L228L 0.42 TCGA-FW-A3TU-06 19 14024388 14024388 G A CC2D1A Missense_Mutation p.E229K 0.42 tolerated(0.26) benign(0.005) TCGA-FW-A3TU-06 19 14561710 14561710 C T PKN1 Silent p.A259A 0.27 TCGA-FW-A3TU-06 19 14561711 14561711 C T PKN1 Nonsense_Mutation p.Q260* 0.26 TCGA-FW-A3TU-06 19 14676960 14676960 G A NDUFB7 Silent p.P133P 0.46 TCGA-FW-A3TU-06 19 14676961 14676961 G T NDUFB7 Missense_Mutation p.P133H 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3TU-06 19 15807291 15807291 C T CYP4F12 Silent p.L456L 0.42 TCGA-FW-A3TU-06 19 17088327 17088327 C T CPAMD8 Missense_Mutation p.E584K 0.35 tolerated(0.05) benign(0.063) TCGA-FW-A3TU-06 19 17922440 17922440 G A B3GNT3 Missense_Mutation p.D210N 0.38 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 19 18313451 18313451 C T RAB3A Missense_Mutation p.G34S 0.29 deleterious(0) probably_damaging(0.998) TCGA-FW-A3TU-06 19 18313452 18313452 C T RAB3A Silent p.V33V 0.30 TCGA-FW-A3TU-06 19 1917808 1917808 C T SCAMP4 Silent p.Y41Y 0.66 TCGA-FW-A3TU-06 19 19976785 19976785 G A ZNF253 5'UTR 0.32 TCGA-FW-A3TU-06 19 19976786 19976786 G C ZNF253 5'UTR 0.32 TCGA-FW-A3TU-06 19 22784227 22784227 C T AC011467.1 5'Flank 0.21 TCGA-FW-A3TU-06 19 22941741 22941741 G A ZNF99 Missense_Mutation p.H324Y 0.47 tolerated(1) benign(0.211) TCGA-FW-A3TU-06 19 23159421 23159421 A G ZNF728 Missense_Mutation p.F240L 0.42 tolerated(0.64) benign(0.027) TCGA-FW-A3TU-06 19 2852659 2852659 C T ZNF555 Missense_Mutation p.P199L 0.38 deleterious(0.03) benign(0.327) TCGA-FW-A3TU-06 19 33604796 33604796 C G GPATCH1 Missense_Mutation p.H672Q 0.41 tolerated(0.59) benign(0.004) TCGA-FW-A3TU-06 19 33604797 33604797 C T GPATCH1 Nonsense_Mutation p.R673* 0.42 TCGA-FW-A3TU-06 19 33666309 33666309 G A WDR88 Missense_Mutation p.R417K 0.27 tolerated(0.73) benign(0.05) TCGA-FW-A3TU-06 19 33696367 33696367 G A LRP3 Missense_Mutation p.E231K 0.37 tolerated(0.18) probably_damaging(0.995) TCGA-FW-A3TU-06 19 35176327 35176327 T G ZNF302 3'UTR 0.45 TCGA-FW-A3TU-06 19 35232496 35232496 C - ZNF181 Frame_Shift_Del p.Q404Nfs*8 0.26 TCGA-FW-A3TU-06 19 35832695 35832695 A G CD22 Missense_Mutation p.N621S 0.28 deleterious(0) possibly_damaging(0.802) TCGA-FW-A3TU-06 19 37210285 37210285 T G ZNF567 Missense_Mutation p.L189R 0.36 tolerated(0.36) benign(0.221) TCGA-FW-A3TU-06 19 38945876 38945876 G A RYR1 Missense_Mutation p.G481E 0.30 probably_damaging(1) TCGA-FW-A3TU-06 19 39114828 39114828 C G EIF3K Missense_Mutation p.D90E 0.27 tolerated(0.31) benign(0.014) TCGA-FW-A3TU-06 19 39589288 39589288 G A PAPL Silent p.G104G 0.25 TCGA-FW-A3TU-06 19 40093217 40093217 T A LGALS13 Silent p.S3S 0.42 TCGA-FW-A3TU-06 19 40739733 40739733 C T AKT2 3'UTR 0.37 TCGA-FW-A3TU-06 19 41206336 41206336 G A ADCK4 Missense_Mutation p.P305L 0.36 deleterious(0) possibly_damaging(0.864) TCGA-FW-A3TU-06 19 42224885 42224885 C T CEACAM5 Silent p.Y605Y 0.44 TCGA-FW-A3TU-06 19 42396404 42396404 T G ARHGEF1 Silent p.V124V 0.35 TCGA-FW-A3TU-06 19 42482945 42482945 G A ATP1A3 Silent p.S494S 0.45 TCGA-FW-A3TU-06 19 43376022 43376022 G A PSG1 Silent p.L202L 0.36 TCGA-FW-A3TU-06 19 44377627 44377627 C T ZNF404 Missense_Mutation p.E247K 0.40 tolerated(0.1) possibly_damaging(0.742) TCGA-FW-A3TU-06 19 44777326 44777326 T G ZNF233 Missense_Mutation p.N171K 0.36 deleterious(0.04) benign(0.001) TCGA-FW-A3TU-06 19 45206902 45206902 C T CEACAM16 Silent p.I107I 0.53 TCGA-FW-A3TU-06 19 46498701 46498701 C T CCDC61 5'Flank 0.31 TCGA-FW-A3TU-06 19 47124837 47124837 C T PTGIR Silent p.L287L 0.38 TCGA-FW-A3TU-06 19 47856301 47856301 G A DHX34 Missense_Mutation p.R5K 0.33 deleterious_low_confidence(0.03) benign(0.012) TCGA-FW-A3TU-06 19 47856522 47856522 G A DHX34 Missense_Mutation p.E79K 0.45 tolerated(0.38) benign(0.002) TCGA-FW-A3TU-06 19 47991484 47991484 G T NAPA 3'UTR 0.40 TCGA-FW-A3TU-06 19 47991485 47991485 G A NAPA 3'UTR 0.40 TCGA-FW-A3TU-06 19 48198166 48198166 G A GLTSCR1 Missense_Mutation p.G969R 0.31 probably_damaging(0.988) TCGA-FW-A3TU-06 19 48198167 48198167 G A GLTSCR1 Missense_Mutation p.G969E 0.31 probably_damaging(0.984) TCGA-FW-A3TU-06 19 48343058 48343058 C T CRX Missense_Mutation p.S245F 0.34 tolerated(0.09) possibly_damaging(0.507) TCGA-FW-A3TU-06 19 48511956 48511956 G A ELSPBP1 Nonsense_Mutation p.W11* 0.36 TCGA-FW-A3TU-06 19 48547137 48547137 C T CABP5 Missense_Mutation p.G15S 0.32 tolerated(0.27) probably_damaging(0.997) TCGA-FW-A3TU-06 19 51645996 51645996 C T SIGLEC7 Missense_Mutation p.R124C 0.42 deleterious(0) possibly_damaging(0.743) TCGA-FW-A3TU-06 19 51914469 51914469 C T SIGLEC10 Missense_Mutation p.E660K 0.44 tolerated(0.22) benign(0.09) TCGA-FW-A3TU-06 19 53303099 53303099 C T ZNF28 Missense_Mutation p.E667K 0.34 tolerated(0.1) benign(0.287) TCGA-FW-A3TU-06 19 53770208 53770208 G A VN1R4 Silent p.I237I 0.33 TCGA-FW-A3TU-06 19 54204492 54204492 G A MIR520B RNA 0.29 TCGA-FW-A3TU-06 19 55331457 55331457 C T KIR3DL1 Silent p.I215I 0.43 TCGA-FW-A3TU-06 19 55693424 55693424 C T PTPRH Missense_Mutation p.R1053K 0.42 benign(0.027) TCGA-FW-A3TU-06 19 56249692 56249692 C T NLRP9 Missense_Mutation p.E17K 0.49 tolerated(0.41) probably_damaging(0.917) TCGA-FW-A3TU-06 19 56370494 56370494 C T NLRP4 Missense_Mutation p.H579Y 0.41 tolerated(1) benign(0.003) TCGA-FW-A3TU-06 19 5933471 5933471 G A RANBP3 Silent p.F142F 0.44 TCGA-FW-A3TU-06 19 6147624 6147624 G A ACSBG2 Missense_Mutation p.E79K 0.37 tolerated(0.43) benign(0.01) TCGA-FW-A3TU-06 19 6467403 6467403 G A DENND1C 3'UTR 0.29 TCGA-FW-A3TU-06 19 6694576 6694576 G A C3 Missense_Mutation p.P1007L 0.38 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 19 6694577 6694577 G A C3 Missense_Mutation p.P1007S 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 19 6731932 6731932 G A GPR108 Missense_Mutation p.L424F 0.45 deleterious(0.01) probably_damaging(1) TCGA-FW-A3TU-06 19 6836570 6836570 C T VAV1 Silent p.N635N 0.39 TCGA-FW-A3TU-06 19 7081464 7081464 C T ZNF557 Missense_Mutation p.P114L 0.41 tolerated(0.06) benign(0.007) TCGA-FW-A3TU-06 19 7117251 7117251 T C INSR Missense_Mutation p.E1322G 0.40 deleterious(0.05) probably_damaging(0.928) TCGA-FW-A3TU-06 19 7172378 7172378 G T INSR Silent p.I397I 0.42 TCGA-FW-A3TU-06 19 7619900 7619900 C T PNPLA6 Missense_Mutation p.S929L 0.39 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3TU-06 19 8190815 8190815 C T FBN3 Missense_Mutation p.E898K 0.43 tolerated(0.4) benign(0.014) TCGA-FW-A3TU-06 19 8563776 8563776 G A PRAM1 Missense_Mutation p.P306S 0.43 deleterious(0.03) possibly_damaging(0.775) TCGA-FW-A3TU-06 19 9076527 9076527 G A MUC16 Missense_Mutation p.T3640I 0.43 unknown(0) TCGA-FW-A3TU-06 19 9407499 9407499 G A ZNF699 Missense_Mutation p.S194F 0.28 tolerated(0.07) benign(0.259) TCGA-FW-A3TU-06 19 9869117 9869117 G A ZNF846 Silent p.S212S 0.39 TCGA-FW-A3TU-06 1 110199947 110199947 C T GSTM4 Intron 0.51 TCGA-FW-A3TU-06 1 110465850 110465850 G T CSF1 Missense_Mutation p.A203S 0.44 tolerated(0.1) probably_damaging(0.942) TCGA-FW-A3TU-06 1 111857905 111857905 G A CHIA Missense_Mutation p.V110I 0.42 deleterious(0) probably_damaging(0.99) TCGA-FW-A3TU-06 1 114165440 114165440 C T MAGI3 Missense_Mutation p.S395L 0.24 tolerated(0.06) benign(0.044) TCGA-FW-A3TU-06 1 114454805 114454805 C A DCLRE1B Missense_Mutation p.P531T 0.42 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FW-A3TU-06 1 114454806 114454806 C A DCLRE1B Missense_Mutation p.P531H 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FW-A3TU-06 1 11595677 11595677 G A PTCHD2 Silent p.E1264E 0.64 TCGA-FW-A3TU-06 1 120306804 120306804 A C HMGCS2 Missense_Mutation p.S184A 0.45 tolerated(0.93) benign(0.028) TCGA-FW-A3TU-06 1 120307135 120307135 C T HMGCS2 Silent p.L73L 0.44 TCGA-FW-A3TU-06 1 12786066 12786066 G A AADACL3 3'Flank 0.50 TCGA-FW-A3TU-06 1 145416847 145416847 C T HFE2 Missense_Mutation p.P398S 0.33 tolerated(0.09) benign(0.047) TCGA-FW-A3TU-06 1 150437134 150437134 G T RPRD2 Nonsense_Mutation p.E515* 0.54 TCGA-FW-A3TU-06 1 150445796 150445796 C T RPRD2 Missense_Mutation p.P1458S 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3TU-06 1 150956828 150956828 C T ANXA9 Silent p.P113P 0.35 TCGA-FW-A3TU-06 1 150998120 150998120 C T PRUNE Missense_Mutation p.S217F 0.35 deleterious(0.04) benign(0.078) TCGA-FW-A3TU-06 1 151006421 151006421 C T PRUNE Missense_Mutation p.A358V 0.38 tolerated(0.34) possibly_damaging(0.595) TCGA-FW-A3TU-06 1 151133436 151133436 G A LYSMD1 Silent p.V202V 0.43 TCGA-FW-A3TU-06 1 151775135 151775135 G A LINGO4 Missense_Mutation p.P16S 0.31 tolerated(0.41) benign(0.001) TCGA-FW-A3TU-06 1 151775136 151775136 G A LINGO4 Silent p.P15P 0.31 TCGA-FW-A3TU-06 1 152280121 152280121 A G FLG Missense_Mutation p.F2414S 0.37 probably_damaging(0.985) TCGA-FW-A3TU-06 1 152325355 152325355 C T FLG2 Missense_Mutation p.G1636E 0.42 probably_damaging(0.972) TCGA-FW-A3TU-06 1 153932814 153932814 G A SLC39A1 Silent p.L245L 0.32 TCGA-FW-A3TU-06 1 154543971 154543971 C T CHRNB2 Silent p.I224I 0.36 TCGA-FW-A3TU-06 1 154744670 154744670 G A KCNN3 Missense_Mutation p.P410L 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-FW-A3TU-06 1 155148665 155148665 C T TRIM46 Silent p.A209A 0.37 TCGA-FW-A3TU-06 1 156235982 156235982 G A SMG5 Missense_Mutation p.S482L 0.39 deleterious(0.01) probably_damaging(0.918) TCGA-FW-A3TU-06 1 156669733 156669733 G A CRABP2 3'UTR 0.44 TCGA-FW-A3TU-06 1 157105388 157105388 G A ETV3 Silent p.V53V 0.40 TCGA-FW-A3TU-06 1 157508948 157508948 C T FCRL5 Missense_Mutation p.G444R 0.29 deleterious(0.04) probably_damaging(0.942) TCGA-FW-A3TU-06 1 158227228 158227228 G A CD1A Missense_Mutation p.G301S 0.41 tolerated(0.12) probably_damaging(0.998) TCGA-FW-A3TU-06 1 158324277 158324277 G A CD1E Missense_Mutation p.G57R 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 1 158632529 158632529 G A SPTA1 Silent p.I809I 0.43 TCGA-FW-A3TU-06 1 158735579 158735579 C T OR6N1 Silent p.K298K 0.41 TCGA-FW-A3TU-06 1 159033452 159033452 T C AIM2 Missense_Mutation p.K277E 0.43 tolerated(0.06) benign(0.054) TCGA-FW-A3TU-06 1 159752152 159752152 G A DUSP23 3'UTR 0.36 TCGA-FW-A3TU-06 1 159752156 159752156 C T DUSP23 3'UTR 0.36 TCGA-FW-A3TU-06 1 15987431 15987431 G A RSC1A1 Silent p.L356L 0.79 TCGA-FW-A3TU-06 1 159898129 159898129 G A IGSF9 Missense_Mutation p.P1017S 0.60 deleterious(0.02) possibly_damaging(0.835) TCGA-FW-A3TU-06 1 160784358 160784358 G A LY9 Silent p.R293R 0.37 TCGA-FW-A3TU-06 1 161042633 161042633 C T PVRL4 Missense_Mutation p.V451M 0.44 deleterious(0.01) possibly_damaging(0.851) TCGA-FW-A3TU-06 1 161042634 161042634 C T PVRL4 Silent p.T450T 0.44 TCGA-FW-A3TU-06 1 161683033 161683033 C T FCRLA Missense_Mutation p.P338S 0.27 deleterious(0.01) probably_damaging(1) TCGA-FW-A3TU-06 1 16257608 16257608 G T SPEN Nonsense_Mutation p.E1625* 0.66 TCGA-FW-A3TU-06 1 166826793 166826793 C T TADA1 3'UTR 0.39 TCGA-FW-A3TU-06 1 167487763 167487763 G A CD247 5'UTR 0.27 TCGA-FW-A3TU-06 1 169351352 169351352 T G BLZF1 Missense_Mutation p.S284A 0.36 tolerated(0.46) benign(0.002) TCGA-FW-A3TU-06 1 169511679 169511679 C T F5 Missense_Mutation p.M883I 0.34 tolerated(0.34) benign(0.004) TCGA-FW-A3TU-06 1 177250406 177250406 G A BRINP2 Silent p.R698R 0.39 TCGA-FW-A3TU-06 1 181701793 181701793 G A CACNA1E Silent p.K857K 0.38 TCGA-FW-A3TU-06 1 185958690 185958690 C T HMCN1 Missense_Mutation p.S1040L 0.36 probably_damaging(0.993) TCGA-FW-A3TU-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.33 TCGA-FW-A3TU-06 1 196274467 196274467 G A KCNT2 Missense_Mutation p.S831F 0.30 deleterious(0) probably_damaging(0.931) TCGA-FW-A3TU-06 1 196311244 196311244 C T KCNT2 Silent p.K506K 0.29 TCGA-FW-A3TU-06 1 196716474 196716474 G A CFH 3'UTR 0.35 TCGA-FW-A3TU-06 1 201046079 201046079 T C CACNA1S Missense_Mutation p.N599S 0.36 tolerated(0.39) benign(0.054) TCGA-FW-A3TU-06 1 201081319 201081319 C T CACNA1S Nonsense_Mutation p.W50* 0.45 TCGA-FW-A3TU-06 1 201981790 201981790 G A ELF3 Silent p.Q167Q 0.37 TCGA-FW-A3TU-06 1 202568427 202568427 C T SYT2 Silent p.K324K 0.29 TCGA-FW-A3TU-06 1 203044805 203044805 C T PPFIA4 Missense_Mutation p.T659I 0.53 deleterious(0) probably_damaging(0.934) TCGA-FW-A3TU-06 1 204086823 204086823 C T SOX13 Missense_Mutation p.P255S 0.38 tolerated(0.13) possibly_damaging(0.839) TCGA-FW-A3TU-06 1 204086824 204086824 C T SOX13 Missense_Mutation p.P255L 0.38 deleterious(0) possibly_damaging(0.887) TCGA-FW-A3TU-06 1 205027704 205027704 G A CNTN2 Missense_Mutation p.E134K 0.41 tolerated(0.44) benign(0.053) TCGA-FW-A3TU-06 1 207195237 207195237 G A C1orf116 3'UTR 0.47 TCGA-FW-A3TU-06 1 209782415 209782415 C T CAMK1G Silent p.F242F 0.34 TCGA-FW-A3TU-06 1 215916588 215916588 G A USH2A Nonsense_Mutation p.Q3827* 0.50 TCGA-FW-A3TU-06 1 22148741 22148741 G A LDLRAD2 3'UTR 0.74 TCGA-FW-A3TU-06 1 22148742 22148742 G A LDLRAD2 3'UTR 0.74 TCGA-FW-A3TU-06 1 229772852 229772852 C T URB2 Missense_Mutation p.S831L 0.38 tolerated(0.38) benign(0) TCGA-FW-A3TU-06 1 231906813 231906813 G A DISC1 Missense_Mutation p.R544K 0.33 tolerated(0.7) benign(0.056) TCGA-FW-A3TU-06 1 23234568 23234568 C T EPHB2 Silent p.L754L 0.69 TCGA-FW-A3TU-06 1 233750226 233750226 C T KCNK1 Silent p.D103D 0.52 TCGA-FW-A3TU-06 1 235275279 235275279 C T TOMM20 3'UTR 0.48 TCGA-FW-A3TU-06 1 236716961 236716961 A C HEATR1 Missense_Mutation p.S2053A 0.35 tolerated(0.87) benign(0.001) TCGA-FW-A3TU-06 1 240421273 240421273 C T FMN2 Missense_Mutation p.S1365L 0.36 probably_damaging(0.999) TCGA-FW-A3TU-06 1 24077922 24077922 C T TCEB3 Missense_Mutation p.S302F 0.68 tolerated(0.2) possibly_damaging(0.681) TCGA-FW-A3TU-06 1 24186370 24186370 G A FUCA1 Missense_Mutation p.S229F 0.64 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 1 247695273 247695273 C T OR2C3 Missense_Mutation p.E181K 0.53 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.52 TCGA-FW-A3TU-06 1 248616904 248616904 C T OR2T2 Missense_Mutation p.P269L 0.28 deleterious(0.01) possibly_damaging(0.833) TCGA-FW-A3TU-06 1 29069261 29069261 T A YTHDF2 Nonsense_Mutation p.L160* 0.66 TCGA-FW-A3TU-06 1 34158635 34158635 C T CSMD2 Missense_Mutation p.R1276K 0.66 tolerated(1) benign(0.001) TCGA-FW-A3TU-06 1 34209070 34209070 C T CSMD2 Missense_Mutation p.D622N 0.69 tolerated(0.09) probably_damaging(0.99) TCGA-FW-A3TU-06 1 35656577 35656577 T A SFPQ Missense_Mutation p.E346V 0.71 deleterious(0.01) probably_damaging(0.99) TCGA-FW-A3TU-06 1 40544325 40544325 G T PPT1 Silent p.I211I 0.61 TCGA-FW-A3TU-06 1 47564925 47564925 G A CYP4Z1 Missense_Mutation p.E346K 0.50 tolerated(0.37) possibly_damaging(0.874) TCGA-FW-A3TU-06 1 47685758 47685758 G A TAL1 Silent p.L210L 0.42 TCGA-FW-A3TU-06 1 48764537 48764537 G A SPATA6 Missense_Mutation p.H439Y 0.40 deleterious(0) probably_damaging(0.946) TCGA-FW-A3TU-06 1 53544340 53544340 G A PODN Missense_Mutation p.M434I 0.36 tolerated(0.13) probably_damaging(0.995) TCGA-FW-A3TU-06 1 57254704 57254704 G A C1orf168 Silent p.I287I 0.34 TCGA-FW-A3TU-06 1 62675715 62675715 G A L1TD1 Silent p.G423G 0.33 TCGA-FW-A3TU-06 1 62739765 62739765 C T KANK4 Silent p.V337V 0.35 TCGA-FW-A3TU-06 1 66829101 66829101 C T PDE4B Silent p.L377L 0.34 TCGA-FW-A3TU-06 1 75038840 75038840 C T C1orf173 Missense_Mutation p.G852S 0.39 deleterious(0.03) benign(0.306) TCGA-FW-A3TU-06 1 75055760 75055760 C T C1orf173 Missense_Mutation p.M577I 0.67 tolerated(1) benign(0) TCGA-FW-A3TU-06 1 79002400 79002400 G A PTGFR 3'UTR 0.22 TCGA-FW-A3TU-06 1 82434923 82434923 C T LPHN2 Missense_Mutation p.S845F 0.37 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 1 82456635 82456635 C T LPHN2 Missense_Mutation p.P1340S 0.37 tolerated_low_confidence(0.1) benign(0.106) TCGA-FW-A3TU-06 1 82456843 82456843 G A LPHN2 3'UTR 0.32 TCGA-FW-A3TU-06 1 8399673 8399673 C T SLC45A1 Missense_Mutation p.S632L 0.72 tolerated(0.34) benign(0.386) TCGA-FW-A3TU-06 1 84945089 84945089 C T RPF1 Missense_Mutation p.P42L 0.32 deleterious(0.02) benign(0.011) TCGA-FW-A3TU-06 1 89735075 89735075 A C GBP5 Missense_Mutation p.M55R 0.37 deleterious(0) probably_damaging(0.973) TCGA-FW-A3TU-06 1 93170179 93170179 C T EVI5 Nonsense_Mutation p.W135* 0.30 TCGA-FW-A3TU-06 1 94650561 94650561 T C ARHGAP29 Missense_Mutation p.H659R 0.25 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 20 1552398 1552398 C T SIRPB1 Missense_Mutation p.R240H 0.39 deleterious(0.05) benign(0.046) TCGA-FW-A3TU-06 20 1629868 1629868 C T SIRPG Missense_Mutation p.R87K 0.37 deleterious(0) possibly_damaging(0.901) TCGA-FW-A3TU-06 20 16729556 16729556 G A OTOR Missense_Mutation p.D54N 0.35 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 20 19937298 19937298 G A RIN2 Silent p.E115E 0.38 TCGA-FW-A3TU-06 20 2321313 2321313 C T TGM3 3'UTR 0.24 TCGA-FW-A3TU-06 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.44 deleterious(0) probably_damaging(0.991) TCGA-FW-A3TU-06 20 307615 307615 C T SOX12 3'UTR 0.46 TCGA-FW-A3TU-06 20 31041379 31041379 G A C20orf112 Silent p.N191N 0.29 TCGA-FW-A3TU-06 20 3190090 3190090 G A ITPA 5'UTR 0.38 TCGA-FW-A3TU-06 20 33173355 33173355 A T PIGU Missense_Mutation p.I271N 0.38 deleterious(0) probably_damaging(0.917) TCGA-FW-A3TU-06 20 33874911 33874911 G A FAM83C Silent p.L557L 0.36 TCGA-FW-A3TU-06 20 34025252 34025252 C T GDF5 Missense_Mutation p.G153R 0.41 tolerated(0.51) probably_damaging(0.999) TCGA-FW-A3TU-06 20 34129795 34129795 G A ERGIC3 5'UTR 0.47 TCGA-FW-A3TU-06 20 36767919 36767919 G A TGM2 Missense_Mutation p.H413Y 0.27 tolerated(0.2) benign(0.001) TCGA-FW-A3TU-06 20 36993331 36993331 G A LBP Silent p.S282S 0.43 TCGA-FW-A3TU-06 20 36993332 36993332 G A LBP Missense_Mutation p.D283N 0.42 tolerated(0.13) benign(0.097) TCGA-FW-A3TU-06 20 37534725 37534725 C T PPP1R16B Silent p.A270A 0.39 TCGA-FW-A3TU-06 20 41306714 41306714 G A PTPRT Silent p.I315I 0.40 TCGA-FW-A3TU-06 20 43052891 43052891 G A HNF4A Missense_Mutation p.G376R 0.28 deleterious(0) possibly_damaging(0.571) TCGA-FW-A3TU-06 20 43944838 43944838 C T RBPJL Silent p.C344C 0.31 TCGA-FW-A3TU-06 20 44442047 44442047 C T UBE2C Intron 0.37 TCGA-FW-A3TU-06 20 44533686 44533686 C T PLTP Silent p.E259E 0.30 TCGA-FW-A3TU-06 20 45630083 45630083 C T EYA2 Silent p.A42A 0.36 TCGA-FW-A3TU-06 20 47855834 47855834 G A DDX27 Missense_Mutation p.R650K 0.40 deleterious(0.05) benign(0.21) TCGA-FW-A3TU-06 20 51870960 51870960 G A TSHZ2 Silent p.K321K 0.41 TCGA-FW-A3TU-06 20 5282926 5282926 G A PROKR2 Silent p.F305F 0.46 TCGA-FW-A3TU-06 20 57828169 57828169 G A ZNF831 Silent p.R1388R 0.32 TCGA-FW-A3TU-06 20 58645095 58645095 G A C20orf197 Silent p.L22L 0.41 TCGA-FW-A3TU-06 20 60889663 60889663 T A LAMA5 Missense_Mutation p.E2772V 0.35 benign(0.024) TCGA-FW-A3TU-06 20 60989555 60989555 C T RBBP8NL Silent p.P284P 0.38 TCGA-FW-A3TU-06 20 62373917 62373917 C T SLC2A4RG Silent p.V303V 0.43 TCGA-FW-A3TU-06 20 62493878 62493878 G A ABHD16B Missense_Mutation p.G329S 0.26 tolerated(0.69) benign(0.008) TCGA-FW-A3TU-06 20 8862482 8862482 G A PLCB1 Missense_Mutation p.D1213N 0.38 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-FW-A3TU-06 20 9391729 9391729 C T PLCB4 Missense_Mutation p.S670L 0.44 tolerated(0.16) benign(0.422) TCGA-FW-A3TU-06 21 10908841 10908841 A G TPTE Missense_Mutation p.F502L 0.35 tolerated(0.07) possibly_damaging(0.666) TCGA-FW-A3TU-06 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.33 tolerated(0.06) benign(0.063) TCGA-FW-A3TU-06 21 10969106 10969106 C T TPTE Missense_Mutation p.G48R 0.24 tolerated(0.15) benign(0.096) TCGA-FW-A3TU-06 21 11038823 11038823 G A BAGE2 RNA 0.17 TCGA-FW-A3TU-06 21 15537711 15537711 C T LIPI Missense_Mutation p.G266E 0.39 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 21 27938585 27938585 G A CYYR1 Missense_Mutation p.S59L 0.31 deleterious(0.05) probably_damaging(0.979) TCGA-FW-A3TU-06 21 30961161 30961161 G A GRIK1 Missense_Mutation p.H523Y 0.25 tolerated(0.12) benign(0.388) TCGA-FW-A3TU-06 21 39870318 39870318 T G ERG Intron 0.32 TCGA-FW-A3TU-06 21 45475630 45475630 C T TRAPPC10 Silent p.S178S 0.37 TCGA-FW-A3TU-06 21 45860758 45860758 G A TRPM2 Silent p.Q1452Q 0.32 TCGA-FW-A3TU-06 21 46901894 46901894 G A COL18A1 Silent p.P723P 0.51 TCGA-FW-A3TU-06 21 46901895 46901895 G A COL18A1 Missense_Mutation p.G724R 0.50 probably_damaging(0.979) TCGA-FW-A3TU-06 21 47410319 47410319 G A COL6A1 Missense_Mutation p.G329R 0.23 deleterious(0) unknown(0) TCGA-FW-A3TU-06 21 47410320 47410320 G A COL6A1 Missense_Mutation p.G329E 0.22 deleterious(0) unknown(0) TCGA-FW-A3TU-06 22 17280681 17280681 C T XKR3 Missense_Mutation p.R190Q 0.37 tolerated(0.98) benign(0) TCGA-FW-A3TU-06 22 17468991 17468991 G A GAB4 Missense_Mutation p.S182F 0.35 deleterious(0) possibly_damaging(0.831) TCGA-FW-A3TU-06 22 17669248 17669248 G A CECR1 Silent p.F354F 0.36 TCGA-FW-A3TU-06 22 18347737 18347737 G A MICAL3 Silent p.L845L 0.37 TCGA-FW-A3TU-06 22 20386710 20386710 A C PI4KAP1 RNA 0.29 TCGA-FW-A3TU-06 22 23465731 23465731 C T GNAZ 3'UTR 0.33 TCGA-FW-A3TU-06 22 25294296 25294296 G A SGSM1 Missense_Mutation p.E849K 0.34 tolerated(0.34) benign(0.048) TCGA-FW-A3TU-06 22 27021580 27021580 C T CRYBA4 Silent p.A98A 0.38 TCGA-FW-A3TU-06 22 29745331 29745331 G A AP1B1 Missense_Mutation p.S438F 0.41 deleterious(0) benign(0.103) TCGA-FW-A3TU-06 22 30125176 30125176 G A CABP7 Missense_Mutation p.E167K 0.44 tolerated(0.35) benign(0.103) TCGA-FW-A3TU-06 22 30419444 30419444 A G MTMR3 Intron 0.37 TCGA-FW-A3TU-06 22 30688494 30688494 G A TBC1D10A Missense_Mutation p.P473L 0.39 tolerated_low_confidence(0.14) benign(0.11) TCGA-FW-A3TU-06 22 30862999 30862999 G A SEC14L3 Silent p.F163F 0.39 TCGA-FW-A3TU-06 22 31859912 31859912 G A EIF4ENIF1 Missense_Mutation p.L114F 0.39 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 22 32545752 32545752 C T C22orf42 Missense_Mutation p.E224K 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.486) TCGA-FW-A3TU-06 22 35481704 35481704 C T ISX 3'UTR 0.38 TCGA-FW-A3TU-06 22 35947705 35947705 G A RASD2 Missense_Mutation p.D143N 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3TU-06 22 35947954 35947954 G A RASD2 Missense_Mutation p.D226N 0.38 tolerated(0.08) benign(0.039) TCGA-FW-A3TU-06 22 36556944 36556944 G C APOL3 5'UTR 0.38 TCGA-FW-A3TU-06 22 36556945 36556945 G A APOL3 5'UTR 0.39 TCGA-FW-A3TU-06 22 36691693 36691693 C T MYH9 Missense_Mutation p.E1115K 0.43 possibly_damaging(0.864) TCGA-FW-A3TU-06 22 36702083 36702083 G A MYH9 Silent p.D684D 0.38 TCGA-FW-A3TU-06 22 37334145 37334145 C T CSF2RB Silent p.G765G 0.46 TCGA-FW-A3TU-06 22 38509602 38509602 G A PLA2G6 Silent p.S698S 0.26 TCGA-FW-A3TU-06 22 39418882 39418882 C G APOBEC3D Missense_Mutation p.P25A 0.30 tolerated(0.06) possibly_damaging(0.697) TCGA-FW-A3TU-06 22 39907930 39907930 C T MIEF1 Missense_Mutation p.P74L 0.46 tolerated(1) probably_damaging(0.997) TCGA-FW-A3TU-06 22 44965319 44965319 G A LINC00207 Intron 0.35 TCGA-FW-A3TU-06 22 46656474 46656474 G A PKDREJ Missense_Mutation p.P916S 0.38 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TU-06 22 46786383 46786383 C T CELSR1 Missense_Mutation p.G2084E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 22 50530545 50530545 G A MOV10L1 Silent p.L71L 0.41 TCGA-FW-A3TU-06 2 108487281 108487281 C T RGPD4 Missense_Mutation p.L941F 0.73 tolerated(0.58) benign(0.003) TCGA-FW-A3TU-06 2 11053937 11053937 C T KCNF1 Missense_Mutation p.P462L 0.30 tolerated_low_confidence(0.27) benign(0) TCGA-FW-A3TU-06 2 112541914 112541914 G A ANAPC1 Missense_Mutation p.H1661Y 0.34 tolerated(0.12) possibly_damaging(0.486) TCGA-FW-A3TU-06 2 112777075 112777075 G A MERTK Missense_Mutation p.R722Q 0.42 deleterious(0) possibly_damaging(0.9) TCGA-FW-A3TU-06 2 11338875 11338875 G A ROCK2 Missense_Mutation p.T979I 0.19 deleterious(0.03) possibly_damaging(0.806) TCGA-FW-A3TU-06 2 113540313 113540313 C T IL1A Missense_Mutation p.D26N 0.35 tolerated(0.05) probably_damaging(0.945) TCGA-FW-A3TU-06 2 121746728 121746728 G A GLI2 Missense_Mutation p.E1080K 0.34 tolerated(0.13) benign(0.026) TCGA-FW-A3TU-06 2 121748158 121748158 C T GLI2 Silent p.I1556I 0.44 TCGA-FW-A3TU-06 2 121748159 121748159 C T GLI2 Missense_Mutation p.P1557S 0.43 tolerated(0.12) probably_damaging(0.996) TCGA-FW-A3TU-06 2 124999873 124999873 G A CNTNAP5 Missense_Mutation p.G95E 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 2 128183669 128183669 C T PROC Missense_Mutation p.P182S 0.48 tolerated(0.27) possibly_damaging(0.463) TCGA-FW-A3TU-06 2 128341804 128341804 G A MYO7B Nonsense_Mutation p.W484* 0.45 TCGA-FW-A3TU-06 2 136540552 136540552 C T UBXN4 3'UTR 0.41 TCGA-FW-A3TU-06 2 139428746 139428746 C T NXPH2 Missense_Mutation p.E181K 0.35 deleterious(0.02) possibly_damaging(0.489) TCGA-FW-A3TU-06 2 141709478 141709478 G A LRP1B Silent p.F973F 0.38 TCGA-FW-A3TU-06 2 149227929 149227929 C T MBD5 Missense_Mutation p.S806F 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-FW-A3TU-06 2 152512673 152512673 C T NEB Silent p.Q2163Q 0.38 TCGA-FW-A3TU-06 2 1546234 1546234 G A TPO Silent p.P930P 0.41 TCGA-FW-A3TU-06 2 158142597 158142597 G A GALNT5 Silent p.E564E 0.39 TCGA-FW-A3TU-06 2 160798371 160798371 G A PLA2R1 Missense_Mutation p.P1437L 0.42 tolerated(0.19) benign(0.004) TCGA-FW-A3TU-06 2 168104667 168104667 G A XIRP2 Missense_Mutation p.M2255I 0.36 possibly_damaging(0.487) TCGA-FW-A3TU-06 2 168115737 168115737 A T XIRP2 3'UTR 0.43 TCGA-FW-A3TU-06 2 169833151 169833151 C T ABCB11 Missense_Mutation p.R415Q 0.33 tolerated(0.27) benign(0.014) TCGA-FW-A3TU-06 2 170386370 170386370 C T FASTKD1 Missense_Mutation p.E837K 0.31 tolerated(0.68) possibly_damaging(0.755) TCGA-FW-A3TU-06 2 173352513 173352513 G A ITGA6 Missense_Mutation p.D768N 0.36 tolerated(0.14) benign(0.003) TCGA-FW-A3TU-06 2 179408030 179408030 C T TTN Missense_Mutation p.E32224K 0.36 TCGA-FW-A3TU-06 2 179408973 179408973 C T TTN Missense_Mutation p.E31995K 0.39 TCGA-FW-A3TU-06 2 179458819 179458819 T G TTN Missense_Mutation p.H19434P 0.35 TCGA-FW-A3TU-06 2 179470198 179470198 C T TTN Missense_Mutation p.E17942K 0.29 TCGA-FW-A3TU-06 2 179542471 179542471 C T TTN Missense_Mutation p.E11390K 0.41 TCGA-FW-A3TU-06 2 179587037 179587037 C T TTN Missense_Mutation p.A7493T 0.35 TCGA-FW-A3TU-06 2 179604308 179604308 G A TTN Missense_Mutation p.P4551L 0.48 TCGA-FW-A3TU-06 2 179611406 179611406 C T TTN Intron 0.27 TCGA-FW-A3TU-06 2 179613026 179613026 C T TTN Intron 0.43 TCGA-FW-A3TU-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.29 TCGA-FW-A3TU-06 2 179641768 179641768 C T TTN Missense_Mutation p.G1608E 0.43 TCGA-FW-A3TU-06 2 180348047 180348047 G A ZNF385B Missense_Mutation p.P208S 0.46 tolerated(0.41) benign(0.001) TCGA-FW-A3TU-06 2 182347105 182347105 G A ITGA4 Missense_Mutation p.D287N 0.39 deleterious(0.02) benign(0.187) TCGA-FW-A3TU-06 2 183104852 183104852 C T PDE1A Missense_Mutation p.G128E 0.37 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 2 186672369 186672369 C T FSIP2 Silent p.I6201I 0.29 TCGA-FW-A3TU-06 2 189864227 189864227 C T COL3A1 Missense_Mutation p.A718V 0.35 unknown(0) TCGA-FW-A3TU-06 2 189917479 189917479 G A COL5A2 Missense_Mutation p.P904L 0.37 unknown(0) TCGA-FW-A3TU-06 2 189950480 189950480 C T COL5A2 Missense_Mutation p.G237R 0.38 probably_damaging(1) TCGA-FW-A3TU-06 2 201726168 201726168 A T CLK1 Silent p.S103S 0.38 TCGA-FW-A3TU-06 2 20205860 20205860 G A MATN3 Silent p.S145S 0.42 TCGA-FW-A3TU-06 2 202264132 202264132 G A TRAK2 Silent p.L150L 0.49 TCGA-FW-A3TU-06 2 207171013 207171013 T A ZDBF2 Silent p.V587V 0.43 TCGA-FW-A3TU-06 2 21235041 21235041 C T APOB Missense_Mutation p.E1567K 0.31 probably_damaging(0.986) TCGA-FW-A3TU-06 2 219222449 219222449 C T C2orf62 Missense_Mutation p.S104F 0.31 deleterious(0) probably_damaging(0.992) TCGA-FW-A3TU-06 2 220501064 220501064 C T SLC4A3 Silent p.I771I 0.40 TCGA-FW-A3TU-06 2 222298922 222298922 G A EPHA4 Silent p.I812I 0.39 TCGA-FW-A3TU-06 2 223574553 223574553 G A MOGAT1 Missense_Mutation p.E318K 0.41 deleterious(0) possibly_damaging(0.744) TCGA-FW-A3TU-06 2 227945200 227945200 G A COL4A4 Missense_Mutation p.R588W 0.35 possibly_damaging(0.633) TCGA-FW-A3TU-06 2 228846444 228846444 C T SPHKAP Missense_Mutation p.E1698K 0.42 deleterious(0.04) possibly_damaging(0.855) TCGA-FW-A3TU-06 2 228882025 228882025 G C SPHKAP Missense_Mutation p.S1182C 0.40 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 2 234863801 234863801 G A TRPM8 Silent p.K423K 0.82 TCGA-FW-A3TU-06 2 238475806 238475806 C T PRLH Silent p.S84S 0.53 TCGA-FW-A3TU-06 2 238475807 238475807 C T PRLH Nonsense_Mutation p.Q85* 0.53 TCGA-FW-A3TU-06 2 242741286 242741286 C T GAL3ST2 Silent p.I70I 0.67 TCGA-FW-A3TU-06 2 242741287 242741287 C T GAL3ST2 Missense_Mutation p.L71F 0.68 deleterious(0) probably_damaging(0.987) TCGA-FW-A3TU-06 2 27263260 27263260 G A TMEM214 Silent p.L613L 0.33 TCGA-FW-A3TU-06 2 27263261 27263261 A C TMEM214 Silent p.R614R 0.34 TCGA-FW-A3TU-06 2 27876607 27876607 C T SUPT7L Silent p.E330E 0.38 TCGA-FW-A3TU-06 2 28823694 28823694 C G PLB1 Silent p.V831V 0.46 TCGA-FW-A3TU-06 2 28823695 28823695 C T PLB1 Nonsense_Mutation p.Q832* 0.47 TCGA-FW-A3TU-06 2 28827596 28827596 C T PLB1 Silent p.F977F 0.36 TCGA-FW-A3TU-06 2 29256359 29256359 C A FAM179A Missense_Mutation p.P719T 0.26 deleterious(0) possibly_damaging(0.585) TCGA-FW-A3TU-06 2 30966411 30966411 G A CAPN13 Missense_Mutation p.S428F 0.42 tolerated(0.1) benign(0.16) TCGA-FW-A3TU-06 2 31599966 31599966 G A XDH Silent p.A460A 0.45 TCGA-FW-A3TU-06 2 32093518 32093518 G A MEMO1 Missense_Mutation p.S269L 0.19 deleterious(0.01) benign(0.146) TCGA-FW-A3TU-06 2 38216753 38216753 C T RMDN2 Silent p.L465L 0.38 TCGA-FW-A3TU-06 2 50724620 50724620 C T NRXN1 Silent p.K950K 0.33 TCGA-FW-A3TU-06 2 55785911 55785911 C T SMEK2 Silent p.K818K 0.35 TCGA-FW-A3TU-06 2 65299917 65299917 G T CEP68 Missense_Mutation p.V563F 0.48 tolerated(0.41) benign(0.118) TCGA-FW-A3TU-06 2 68620305 68620305 G A PLEK Silent p.R258R 0.29 TCGA-FW-A3TU-06 2 70486650 70486650 G C PCYOX1 Missense_Mutation p.V91L 0.38 tolerated(0.05) possibly_damaging(0.633) TCGA-FW-A3TU-06 2 71163195 71163195 C T ATP6V1B1 Silent p.P37P 0.46 TCGA-FW-A3TU-06 2 73679775 73679775 C T ALMS1 Nonsense_Mutation p.Q2040* 0.43 TCGA-FW-A3TU-06 2 74043400 74043400 C T C2orf78 Missense_Mutation p.P684S 0.35 deleterious(0.05) benign(0.184) TCGA-FW-A3TU-06 2 74043401 74043401 C T C2orf78 Missense_Mutation p.P684L 0.34 tolerated(0.08) benign(0.029) TCGA-FW-A3TU-06 2 74489343 74489343 C T SLC4A5 Silent p.R244R 0.40 TCGA-FW-A3TU-06 2 85893848 85893848 G A SFTPB Silent p.F107F 0.44 TCGA-FW-A3TU-06 2 86310220 86310220 G A POLR1A Silent p.L268L 0.39 TCGA-FW-A3TU-06 2 86310221 86310221 G A POLR1A Silent p.A267A 0.40 TCGA-FW-A3TU-06 2 87016531 87016531 G A CD8A Silent p.A180A 0.31 TCGA-FW-A3TU-06 2 9520890 9520890 C T ASAP2 Missense_Mutation p.P657S 0.41 deleterious(0.02) benign(0.304) TCGA-FW-A3TU-06 2 9520891 9520891 C T ASAP2 Missense_Mutation p.P657L 0.41 deleterious(0) possibly_damaging(0.905) TCGA-FW-A3TU-06 2 95519079 95519079 C T ANKRD20A8P RNA 0.40 TCGA-FW-A3TU-06 2 97216948 97216948 C T ARID5A Missense_Mutation p.S228F 0.36 deleterious(0) possibly_damaging(0.646) TCGA-FW-A3TU-06 2 97216949 97216949 C T ARID5A Silent p.S228S 0.36 TCGA-FW-A3TU-06 2 97270005 97270005 G A KANSL3 Missense_Mutation p.P711S 0.42 tolerated_low_confidence(0.16) benign(0.007) TCGA-FW-A3TU-06 2 97529719 97529719 G A SEMA4C Missense_Mutation p.A425V 0.61 tolerated(1) benign(0.009) TCGA-FW-A3TU-06 2 98383006 98383006 C T TMEM131 Missense_Mutation p.S1503N 0.37 deleterious_low_confidence(0.01) benign(0.054) TCGA-FW-A3TU-06 2 99763946 99763946 G A C2ORF15 Missense_Mutation p.G6R 0.32 tolerated_low_confidence(0.72) benign(0) TCGA-FW-A3TU-06 3 100374001 100374001 C T GPR128 Missense_Mutation p.L568F 0.31 deleterious(0.03) probably_damaging(0.938) TCGA-FW-A3TU-06 3 102183090 102183090 C T ZPLD1 Silent p.F268F 0.49 TCGA-FW-A3TU-06 3 111313158 111313158 G A ZBED2 5'UTR 0.48 TCGA-FW-A3TU-06 3 112969645 112969645 C T BOC Missense_Mutation p.A114V 0.45 tolerated(0.15) benign(0.344) TCGA-FW-A3TU-06 3 113753770 113753770 A G KIAA1407 Splice_Site p.X273_splice 0.30 TCGA-FW-A3TU-06 3 118905613 118905613 C T UPK1B Missense_Mutation p.R9C 0.27 deleterious(0.02) possibly_damaging(0.487) TCGA-FW-A3TU-06 3 121707108 121707108 C T ILDR1 3'UTR 0.28 TCGA-FW-A3TU-06 3 121712147 121712147 C T ILDR1 Silent p.E483E 0.43 TCGA-FW-A3TU-06 3 122631187 122631187 G A SEMA5B Missense_Mutation p.R964W 0.50 deleterious(0.02) possibly_damaging(0.711) TCGA-FW-A3TU-06 3 123451944 123451944 C T MYLK Missense_Mutation p.G439R 0.32 deleterious(0) possibly_damaging(0.491) TCGA-FW-A3TU-06 3 124281777 124281777 G A KALRN Missense_Mutation p.V46I 0.44 deleterious(0) possibly_damaging(0.661) TCGA-FW-A3TU-06 3 128598594 128598594 G A ACAD9 Silent p.L20L 0.50 TCGA-FW-A3TU-06 3 132036208 132036208 C A ACPP 5'Flank 0.35 TCGA-FW-A3TU-06 3 13670534 13670534 G A FBLN2 Missense_Mutation p.G900E 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 3 14190064 14190064 G A XPC Silent p.P806P 0.42 TCGA-FW-A3TU-06 3 14190065 14190065 G A XPC Missense_Mutation p.P806L 0.41 deleterious(0) probably_damaging(0.969) TCGA-FW-A3TU-06 3 150644530 150644530 G A CLRN1 3'Flank 0.24 TCGA-FW-A3TU-06 3 150931682 150931682 C T P2RY14 Silent p.L141L 0.33 TCGA-FW-A3TU-06 3 151502041 151502041 C T RP11-454C18.2 Intron 0.75 TCGA-FW-A3TU-06 3 155654153 155654153 C T GMPS Missense_Mutation p.P612S 0.41 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 3 158363444 158363444 T C GFM1 Silent p.S36S 0.42 TCGA-FW-A3TU-06 3 159713390 159713390 G C IL12A 3'UTR 0.45 TCGA-FW-A3TU-06 3 160786795 160786795 A C PPM1L Missense_Mutation p.E311D 0.33 tolerated(0.05) benign(0.168) TCGA-FW-A3TU-06 3 167405098 167405098 C A PDCD10 Nonsense_Mutation p.E161* 0.16 TCGA-FW-A3TU-06 3 17052416 17052416 A G PLCL2 Silent p.K400K 0.34 TCGA-FW-A3TU-06 3 17226659 17226659 C T TBC1D5 Silent p.Q620Q 0.37 TCGA-FW-A3TU-06 3 175473111 175473111 G A NAALADL2 Silent p.K698K 0.21 TCGA-FW-A3TU-06 3 184085980 184085980 C T POLR2H Silent p.S117S 0.45 TCGA-FW-A3TU-06 3 185198098 185198098 G A MAP3K13 Silent p.E860E 0.26 TCGA-FW-A3TU-06 3 186330938 186330938 C T AHSG Missense_Mutation p.S3F 0.24 tolerated(0.08) benign(0.17) TCGA-FW-A3TU-06 3 186330939 186330939 C T AHSG Silent p.S3S 0.24 TCGA-FW-A3TU-06 3 189526145 189526145 G A TP63 Missense_Mutation p.D137N 0.37 deleterious(0.01) benign(0.082) TCGA-FW-A3TU-06 3 193209159 193209159 C T ATP13A4 Missense_Mutation p.D188N 0.30 tolerated(0.06) probably_damaging(0.996) TCGA-FW-A3TU-06 3 195475813 195475813 C T MUC4 Missense_Mutation p.G5332R 0.19 possibly_damaging(0.53) TCGA-FW-A3TU-06 3 195497107 195497107 G A MUC4 Missense_Mutation p.P4460S 0.38 benign(0.095) TCGA-FW-A3TU-06 3 196234913 196234913 C T SMCO1 Missense_Mutation p.D164N 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-FW-A3TU-06 3 196388427 196388429 CTC TT NRROS Frame_Shift_Del p.P638Lfs*120 0.34 TCGA-FW-A3TU-06 3 24188211 24188211 C A THRB Nonsense_Mutation p.E163* 0.55 TCGA-FW-A3TU-06 3 36779647 36779647 C T DCLK3 Silent p.K168K 0.31 TCGA-FW-A3TU-06 3 36780084 36780084 C T DCLK3 Missense_Mutation p.A23T 0.30 tolerated(0.55) benign(0.005) TCGA-FW-A3TU-06 3 36780166 36780166 C T DCLK3 5'UTR 0.25 TCGA-FW-A3TU-06 3 37785448 37785448 G A ITGA9 Missense_Mutation p.E786K 0.47 tolerated(0.15) benign(0.149) TCGA-FW-A3TU-06 3 38149908 38149908 C T DLEC1 Nonsense_Mutation p.Q1011* 0.29 TCGA-FW-A3TU-06 3 39136251 39136251 C T WDR48 3'UTR 0.37 TCGA-FW-A3TU-06 3 39170406 39170406 C G TTC21A Missense_Mutation p.R634G 0.45 tolerated(0.05) probably_damaging(0.984) TCGA-FW-A3TU-06 3 40464385 40464385 G A ENTPD3 Silent p.R292R 0.36 TCGA-FW-A3TU-06 3 42730461 42730461 C T KLHL40 Missense_Mutation p.H508Y 0.19 tolerated(0.08) probably_damaging(0.952) TCGA-FW-A3TU-06 3 46398990 46398990 A T CCR2 5'UTR 0.35 TCGA-FW-A3TU-06 3 46784427 46784427 G A PRSS45 Silent p.T143T 0.55 TCGA-FW-A3TU-06 3 47371546 47371546 G A KLHL18 Silent p.E169E 0.35 TCGA-FW-A3TU-06 3 48508989 48508989 C T TREX1 Missense_Mutation p.P367L 0.49 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-FW-A3TU-06 3 49150050 49150050 G A USP19 Missense_Mutation p.R838C 0.29 tolerated(0.05) possibly_damaging(0.532) TCGA-FW-A3TU-06 3 49292840 49292840 G A CCDC36 Missense_Mutation p.A184T 0.47 tolerated(0.2) benign(0.076) TCGA-FW-A3TU-06 3 49694044 49694044 C T BSN Missense_Mutation p.P2352L 0.48 unknown(0) TCGA-FW-A3TU-06 3 49723382 49723382 G A MST1 Silent p.G387G 0.24 TCGA-FW-A3TU-06 3 49743012 49743012 C T RNF123 Missense_Mutation p.P735L 0.49 tolerated(0.25) benign(0.007) TCGA-FW-A3TU-06 3 49947863 49947863 C T MON1A Silent p.S453S 0.34 TCGA-FW-A3TU-06 3 50131270 50131270 A T RBM5 Missense_Mutation p.M101L 0.40 deleterious(0.03) possibly_damaging(0.685) TCGA-FW-A3TU-06 3 50131271 50131271 T G RBM5 Missense_Mutation p.M101R 0.39 deleterious(0) possibly_damaging(0.899) TCGA-FW-A3TU-06 3 50293693 50293693 C T GNAI2 Silent p.T178T 0.47 TCGA-FW-A3TU-06 3 50293694 50293694 C T GNAI2 Missense_Mutation p.R179C 0.46 deleterious(0.02) benign(0.041) TCGA-FW-A3TU-06 3 51749249 51749249 G A GRM2 Nonsense_Mutation p.W487* 0.48 TCGA-FW-A3TU-06 3 51749250 51749250 G C GRM2 Missense_Mutation p.W487C 0.47 deleterious(0) possibly_damaging(0.832) TCGA-FW-A3TU-06 3 5220473 5220473 C T ARL8B 3'UTR 0.25 TCGA-FW-A3TU-06 3 52328417 52328417 C T GLYCTK 3'Flank 0.77 TCGA-FW-A3TU-06 3 52328418 52328418 C T GLYCTK 3'Flank 0.77 TCGA-FW-A3TU-06 3 52858225 52858225 G A ITIH4 Silent p.T384T 0.49 TCGA-FW-A3TU-06 3 53223127 53223127 C T PRKCD Silent p.V536V 0.26 TCGA-FW-A3TU-06 3 54930972 54930972 G A CACNA2D3 Intron 0.27 TCGA-FW-A3TU-06 3 57545484 57545484 A G PDE12 Missense_Mutation p.E528G 0.49 deleterious(0) possibly_damaging(0.643) TCGA-FW-A3TU-06 3 63600994 63600994 C T SYNPR Missense_Mutation p.S232L 0.22 tolerated(0.15) benign(0.076) TCGA-FW-A3TU-06 3 68782228 68782228 G A FAM19A4 3'UTR 0.52 TCGA-FW-A3TU-06 3 71247488 71247488 G T FOXP1 Silent p.A15A 0.43 TCGA-FW-A3TU-06 3 8590328 8590328 C T LMCD1 Silent p.R154R 0.29 TCGA-FW-A3TU-06 3 8590329 8590329 C T LMCD1 Missense_Mutation p.R155C 0.29 deleterious(0) possibly_damaging(0.908) TCGA-FW-A3TU-06 3 89521624 89521624 C T EPHA3 Missense_Mutation p.L901F 0.25 tolerated(0.24) probably_damaging(0.995) TCGA-FW-A3TU-06 3 9424968 9424968 G A THUMPD3 Missense_Mutation p.V404I 0.57 tolerated(0.25) possibly_damaging(0.823) TCGA-FW-A3TU-06 3 96706414 96706414 G A EPHA6 Missense_Mutation p.G231R 0.31 deleterious(0.02) possibly_damaging(0.895) TCGA-FW-A3TU-06 3 96706415 96706415 G A EPHA6 Missense_Mutation p.G231E 0.31 tolerated(0.16) possibly_damaging(0.795) TCGA-FW-A3TU-06 4 106604163 106604163 G A INTS12 Silent p.G372G 0.52 TCGA-FW-A3TU-06 4 110791115 110791115 C A LRIT3 Missense_Mutation p.P404T 0.50 tolerated(0.17) benign(0.025) TCGA-FW-A3TU-06 4 119952868 119952868 C T SYNPO2 Nonsense_Mutation p.Q980* 0.29 TCGA-FW-A3TU-06 4 124322915 124322915 C T SPRY1 Missense_Mutation p.P57S 0.18 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 4 124322916 124322916 C T SPRY1 Missense_Mutation p.P57L 0.17 deleterious(0) probably_damaging(0.997) TCGA-FW-A3TU-06 4 124323681 124323681 C T SPRY1 Missense_Mutation p.S312F 0.45 deleterious(0.03) benign(0.125) TCGA-FW-A3TU-06 4 129012229 129012229 C T LARP1B Silent p.I144I 0.54 TCGA-FW-A3TU-06 4 153896809 153896809 C T FHDC1 Missense_Mutation p.T789I 0.49 deleterious(0.04) benign(0.097) TCGA-FW-A3TU-06 4 153896810 153896810 C T FHDC1 Silent p.T789T 0.49 TCGA-FW-A3TU-06 4 154555396 154555396 C T KIAA0922 Missense_Mutation p.P1461S 0.25 deleterious(0.03) possibly_damaging(0.559) TCGA-FW-A3TU-06 4 155469997 155469997 G A PLRG1 Missense_Mutation p.P34S 0.73 tolerated(0.11) benign(0.003) TCGA-FW-A3TU-06 4 156135660 156135660 C T NPY2R Missense_Mutation p.S190L 0.55 tolerated(0.78) benign(0.148) TCGA-FW-A3TU-06 4 169060656 169060656 G A ANXA10 Silent p.L40L 0.25 TCGA-FW-A3TU-06 4 169351662 169351662 C T DDX60L Silent p.E548E 0.26 TCGA-FW-A3TU-06 4 177142361 177142361 G A ASB5 Silent p.L205L 0.53 TCGA-FW-A3TU-06 4 186429591 186429591 G A PDLIM3 Missense_Mutation p.P175L 0.29 deleterious(0.03) benign(0.265) TCGA-FW-A3TU-06 4 187130114 187130114 C T CYP4V2 Missense_Mutation p.P396S 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 4 187455077 187455077 T C MTNR1A Silent p.P273P 0.50 TCGA-FW-A3TU-06 4 188924867 188924867 G A ZFP42 Silent p.T302T 0.12 TCGA-FW-A3TU-06 4 2698150 2698150 C T FAM193A Silent p.L822L 0.22 TCGA-FW-A3TU-06 4 3441340 3441340 C T RGS12 Missense_Mutation p.P1425S 0.42 deleterious_low_confidence(0.05) benign(0.06) TCGA-FW-A3TU-06 4 3446640 3446640 C T HGFAC Silent p.S312S 0.69 TCGA-FW-A3TU-06 4 38800438 38800438 G A TLR1 Silent p.F5F 0.40 TCGA-FW-A3TU-06 4 40104657 40104657 C T N4BP2 Missense_Mutation p.P398S 0.25 tolerated(0.35) probably_damaging(0.955) TCGA-FW-A3TU-06 4 46060340 46060340 C T GABRG1 Missense_Mutation p.M270I 0.42 tolerated(0.31) probably_damaging(0.968) TCGA-FW-A3TU-06 4 46976370 46976370 C T GABRA4 Missense_Mutation p.M200I 0.22 tolerated(1) probably_damaging(0.997) TCGA-FW-A3TU-06 4 55161422 55161422 G A PDGFRA Missense_Mutation p.E1085K 0.52 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3TU-06 4 676658 676658 G A MFSD7 Silent p.I391I 0.56 TCGA-FW-A3TU-06 4 69692148 69692148 G A UGT2B10 Silent p.G340G 0.35 TCGA-FW-A3TU-06 4 69798408 69798408 G A UGT2A3 Nonsense_Mutation p.Q312* 0.55 TCGA-FW-A3TU-06 4 69962477 69962477 C T UGT2B7 Missense_Mutation p.S80F 0.47 deleterious(0.04) benign(0.188) TCGA-FW-A3TU-06 4 77700219 77700219 C T SHROOM3 Silent p.F1960F 0.25 TCGA-FW-A3TU-06 4 79518495 79518495 C T ANXA3 Silent p.I219I 0.23 TCGA-FW-A3TU-06 4 84377180 84377180 G A MRPS18C 5'UTR 0.54 TCGA-FW-A3TU-06 4 85969 85969 G A Z95704.2 RNA 0.33 TCGA-FW-A3TU-06 4 89414189 89414189 T A HERC5 Nonsense_Mutation p.Y720* 0.68 TCGA-FW-A3TU-06 5 101834450 101834450 C T SLCO6A1 Silent p.R33R 0.30 TCGA-FW-A3TU-06 5 1033572 1033572 C T NKD2 Silent p.R96R 0.26 TCGA-FW-A3TU-06 5 10426508 10426508 G A MARCH6 Missense_Mutation p.A794T 0.62 tolerated(0.56) benign(0.048) TCGA-FW-A3TU-06 5 112228452 112228452 G A ZRSR1 Missense_Mutation p.M372I 0.32 tolerated(0.11) benign(0.028) TCGA-FW-A3TU-06 5 115783140 115783140 G A SEMA6A Silent p.A754A 0.32 TCGA-FW-A3TU-06 5 118485072 118485072 C T DMXL1 Missense_Mutation p.P1184S 0.48 tolerated(0.11) benign(0.034) TCGA-FW-A3TU-06 5 122272495 122272495 C T SNX24 Missense_Mutation p.H43Y 0.38 tolerated(0.1) possibly_damaging(0.821) TCGA-FW-A3TU-06 5 127685680 127685680 C T FBN2 Missense_Mutation p.G944R 0.55 deleterious(0) probably_damaging(0.998) TCGA-FW-A3TU-06 5 131308459 131308459 C T ACSL6 Silent p.R432R 0.25 TCGA-FW-A3TU-06 5 132233971 132233971 C A AFF4 Missense_Mutation p.S447I 0.10 deleterious(0) probably_damaging(0.998) TCGA-FW-A3TU-06 5 132939595 132939595 C T FSTL4 Missense_Mutation p.G27E 0.51 tolerated_low_confidence(0.11) benign(0.002) TCGA-FW-A3TU-06 5 135692762 135692762 C T TRPC7 Missense_Mutation p.R105Q 0.50 deleterious(0.04) possibly_damaging(0.833) TCGA-FW-A3TU-06 5 13753419 13753419 G A DNAH5 Missense_Mutation p.R3599C 0.65 possibly_damaging(0.898) TCGA-FW-A3TU-06 5 13759047 13759047 C T DNAH5 Missense_Mutation p.D3443N 0.20 possibly_damaging(0.822) TCGA-FW-A3TU-06 5 138657652 138657652 C T MATR3 Silent p.A556A 0.50 TCGA-FW-A3TU-06 5 138713172 138713172 C A SLC23A1 Missense_Mutation p.D494Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TU-06 5 140175795 140175795 G A PCDHA2 Missense_Mutation p.E416K 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3TU-06 5 140175832 140175832 G A PCDHA2 Missense_Mutation p.R428Q 0.50 tolerated_low_confidence(0.13) benign(0.031) TCGA-FW-A3TU-06 5 140176904 140176904 G A PCDHA2 Silent p.E785E 0.30 TCGA-FW-A3TU-06 5 140230577 140230577 G A PCDHA9 Intron 0.27 TCGA-FW-A3TU-06 5 140474818 140474818 C T PCDHB2 Silent p.I148I 0.36 TCGA-FW-A3TU-06 5 140501938 140501938 T A PCDHB4 Missense_Mutation p.L120I 0.50 deleterious_low_confidence(0.05) possibly_damaging(0.524) TCGA-FW-A3TU-06 5 140564555 140564555 A C PCDHB16 3'UTR 0.53 TCGA-FW-A3TU-06 5 140711938 140711938 C T PCDHGA1 Silent p.L563L 0.35 TCGA-FW-A3TU-06 5 140720735 140720735 A G PCDHGA2 Missense_Mutation p.T733A 0.32 tolerated_low_confidence(1) benign(0) TCGA-FW-A3TU-06 5 140736453 140736453 C T PCDHGA4 Silent p.I562I 0.13 TCGA-FW-A3TU-06 5 140745857 140745857 C T PCDHGA5 Silent p.L654L 0.52 TCGA-FW-A3TU-06 5 140784475 140784475 C T PCDHGA9 Silent p.P652P 0.28 TCGA-FW-A3TU-06 5 140801406 140801406 G A PCDHGA11 Silent p.E204E 0.42 TCGA-FW-A3TU-06 5 141335515 141335515 G A PCDH12 Silent p.P634P 0.33 TCGA-FW-A3TU-06 5 147821638 147821638 T G FBXO38 Missense_Mutation p.F1090L 0.47 deleterious(0.01) probably_damaging(0.981) TCGA-FW-A3TU-06 5 149216068 149216068 C T PPARGC1B Missense_Mutation p.P684S 0.52 deleterious(0.04) benign(0.08) TCGA-FW-A3TU-06 5 150275209 150275209 G A ZNF300 Missense_Mutation p.S547F 0.32 tolerated(0.07) probably_damaging(0.996) TCGA-FW-A3TU-06 5 151047129 151047129 C G SPARC Missense_Mutation p.E162Q 0.32 tolerated(1) probably_damaging(0.999) TCGA-FW-A3TU-06 5 153677519 153677519 G A GALNT10 Missense_Mutation p.R94K 0.45 tolerated(1) benign(0) TCGA-FW-A3TU-06 5 171765709 171765709 G A SH3PXD2B Silent p.V800V 0.25 TCGA-FW-A3TU-06 5 173531263 173531263 C T NSG2 Silent p.F82F 0.43 TCGA-FW-A3TU-06 5 177309699 177309699 A T RP11-423H2.1 RNA 0.25 TCGA-FW-A3TU-06 5 178392334 178392334 T G ZNF454 Missense_Mutation p.V310G 0.23 deleterious(0.01) benign(0.07) TCGA-FW-A3TU-06 5 178413693 178413693 G A GRM6 Missense_Mutation p.P521L 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-FW-A3TU-06 5 180432442 180432442 G A BTNL3 Missense_Mutation p.R324K 0.34 deleterious(0.04) probably_damaging(0.989) TCGA-FW-A3TU-06 5 24487695 24487695 G A CDH10 3'UTR 0.61 TCGA-FW-A3TU-06 5 32058099 32058099 C T PDZD2 Missense_Mutation p.T697I 0.63 tolerated(0.1) benign(0.007) TCGA-FW-A3TU-06 5 34035785 34035785 G A C1QTNF3 Missense_Mutation p.P128S 0.16 tolerated(0.15) possibly_damaging(0.812) TCGA-FW-A3TU-06 5 35904513 35904513 G A CAPSL 3'UTR 0.62 TCGA-FW-A3TU-06 5 41010175 41010175 C T MROH2B Missense_Mutation p.E1048K 0.24 deleterious(0.01) benign(0.138) TCGA-FW-A3TU-06 5 52183738 52183738 C T ITGA1 Nonsense_Mutation p.R289* 0.33 TCGA-FW-A3TU-06 5 64483905 64483905 C T ADAMTS6 Missense_Mutation p.E950K 0.54 tolerated(0.82) benign(0.122) TCGA-FW-A3TU-06 5 65892481 65892481 G A MAST4 5'UTR 0.37 TCGA-FW-A3TU-06 5 68715383 68715383 C T MARVELD2 Silent p.F57F 0.58 TCGA-FW-A3TU-06 5 71495070 71495070 C T MAP1B Missense_Mutation p.T1963I 0.51 benign(0.164) TCGA-FW-A3TU-06 5 71495071 71495071 C T MAP1B Silent p.T1963T 0.51 TCGA-FW-A3TU-06 5 76621384 76621384 G A PDE8B Silent p.K140K 0.40 TCGA-FW-A3TU-06 5 77784749 77784749 C T LHFPL2 Missense_Mutation p.E220K 0.23 tolerated(0.2) benign(0.259) TCGA-FW-A3TU-06 5 79374023 79374023 C T THBS4 Silent p.I746I 0.55 TCGA-FW-A3TU-06 5 80770324 80770324 G A SSBP2 Nonsense_Mutation p.R164* 0.41 TCGA-FW-A3TU-06 5 90070088 90070088 C T GPR98 Missense_Mutation p.S4124L 0.37 possibly_damaging(0.587) TCGA-FW-A3TU-06 6 136597335 136597335 G A BCLAF1 Missense_Mutation p.S443L 0.34 tolerated(0.58) possibly_damaging(0.504) TCGA-FW-A3TU-06 6 137245829 137245829 C T SLC35D3 Missense_Mutation p.P416S 0.75 deleterious_low_confidence(0) probably_damaging(1) TCGA-FW-A3TU-06 6 152688434 152688434 C T SYNE1 Silent p.T3297T 0.80 TCGA-FW-A3TU-06 6 155732402 155732402 C T NOX3 Silent p.G467G 0.80 TCGA-FW-A3TU-06 6 17539639 17539639 C T CAP2 Missense_Mutation p.S259L 0.39 deleterious(0.04) benign(0.41) TCGA-FW-A3TU-06 6 17799532 17799532 C G KIF13A Missense_Mutation p.D919H 0.47 deleterious(0.02) possibly_damaging(0.895) TCGA-FW-A3TU-06 6 24174839 24174839 C T DCDC2 3'UTR 0.55 TCGA-FW-A3TU-06 6 25726749 25726749 C T HIST1H2AA Missense_Mutation p.G3R 0.33 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3TU-06 6 26423293 26423293 C T BTN2A3P RNA 0.40 TCGA-FW-A3TU-06 6 26423294 26423294 C T BTN2A3P RNA 0.41 TCGA-FW-A3TU-06 6 29054860 29054860 G A OR2B3 Missense_Mutation p.H56Y 0.32 deleterious(0.01) possibly_damaging(0.904) TCGA-FW-A3TU-06 6 30309876 30309876 C T TRIM39 Missense_Mutation p.A466V 0.37 tolerated(0.18) possibly_damaging(0.61) TCGA-FW-A3TU-06 6 32369581 32369581 C T BTNL2 Silent p.E237E 0.35 TCGA-FW-A3TU-06 6 33137173 33137173 G A COL11A2 Missense_Mutation p.P1176L 0.41 unknown(0) TCGA-FW-A3TU-06 6 33263166 33263166 A T RGL2 Missense_Mutation p.Y352N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TU-06 6 34059678 34059678 G A GRM4 Nonsense_Mutation p.Q240* 0.34 TCGA-FW-A3TU-06 6 40399994 40399994 C T LRFN2 Missense_Mutation p.E287K 0.45 deleterious(0) possibly_damaging(0.855) TCGA-FW-A3TU-06 6 41011958 41011958 C T TSPO2 3'UTR 0.57 TCGA-FW-A3TU-06 6 43106993 43106993 C T PTK7 Silent p.A502A 0.29 TCGA-FW-A3TU-06 6 43466819 43466819 G A TJAP1 Missense_Mutation p.G27E 0.32 tolerated(0.19) possibly_damaging(0.705) TCGA-FW-A3TU-06 6 46623636 46623636 C T SLC25A27 Missense_Mutation p.L55F 0.47 tolerated(0.54) benign(0.03) TCGA-FW-A3TU-06 6 49666134 49666134 C T CRISP2 Missense_Mutation p.D120N 0.48 tolerated(0.63) benign(0.06) TCGA-FW-A3TU-06 6 51915022 51915022 G A PKHD1 Missense_Mutation p.P738S 0.33 tolerated(0.44) benign(0.019) TCGA-FW-A3TU-06 6 52696562 52696562 C A GSTA5 3'UTR 0.33 TCGA-FW-A3TU-06 6 53380952 53380952 G A GCLC Missense_Mutation p.S172F 0.23 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 6 54212204 54212204 G A TINAG Missense_Mutation p.R263Q 0.51 tolerated(0.38) benign(0.017) TCGA-FW-A3TU-06 6 55147023 55147023 G A HCRTR2 Missense_Mutation p.G369E 0.24 deleterious(0) benign(0.387) TCGA-FW-A3TU-06 6 57472382 57472382 C T PRIM2 3'UTR 0.15 TCGA-FW-A3TU-06 6 57512694 57512694 G A PRIM2 3'UTR 0.07 TCGA-FW-A3TU-06 6 66204770 66204770 C T EYS Silent p.L178L 0.51 TCGA-FW-A3TU-06 6 72011711 72011711 C T OGFRL1 Missense_Mutation p.P439S 0.37 tolerated_low_confidence(0.13) benign(0.002) TCGA-FW-A3TU-06 6 72011712 72011712 C T OGFRL1 Missense_Mutation p.P439L 0.36 deleterious_low_confidence(0.05) benign(0.009) TCGA-FW-A3TU-06 6 74528124 74528124 G A CD109 Missense_Mutation p.G1309S 0.23 tolerated(0.78) benign(0.001) TCGA-FW-A3TU-06 6 84569396 84569396 G A CYB5R4 5'UTR 0.25 TCGA-FW-A3TU-06 6 84646087 84646087 T C CYB5R4 Missense_Mutation p.L367P 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 6 87970907 87970907 C T ZNF292 Silent p.C2520C 0.33 TCGA-FW-A3TU-06 6 94120810 94120810 G A EPHA7 Nonsense_Mutation p.Q81* 0.32 TCGA-FW-A3TU-06 6 99894074 99894074 C T USP45 Missense_Mutation p.G525E 0.45 tolerated(1) benign(0.006) TCGA-FW-A3TU-06 7 100074963 100074963 G A TSC22D4 Silent p.S233S 0.44 TCGA-FW-A3TU-06 7 100184214 100184214 C T FBXO24 5'Flank 0.61 TCGA-FW-A3TU-06 7 101952183 101952183 C T SH2B2 Silent p.D349D 0.32 TCGA-FW-A3TU-06 7 102036926 102036926 T A PRKRIP1 Missense_Mutation p.I23N 0.39 deleterious(0) possibly_damaging(0.804) TCGA-FW-A3TU-06 7 102993234 102993234 T G PSMC2 Intron 0.56 TCGA-FW-A3TU-06 7 113518083 113518083 C T PPP1R3A Missense_Mutation p.E1022K 0.46 tolerated(0.19) benign(0.049) TCGA-FW-A3TU-06 7 120428784 120428784 C T TSPAN12 Missense_Mutation p.M260I 0.42 tolerated(0.68) benign(0) TCGA-FW-A3TU-06 7 122091463 122091463 G A CADPS2 Silent p.L751L 0.40 TCGA-FW-A3TU-06 7 123092727 123092727 C T IQUB 3'UTR 0.52 TCGA-FW-A3TU-06 7 127222361 127222361 C T GCC1 Missense_Mutation p.V679I 0.38 tolerated(0.18) benign(0.006) TCGA-FW-A3TU-06 7 127222362 127222362 C T GCC1 Silent p.E678E 0.37 TCGA-FW-A3TU-06 7 129951877 129951877 G A CPA4 Splice_Site p.X332_splice 0.24 TCGA-FW-A3TU-06 7 129951878 129951878 G A CPA4 Missense_Mutation p.D332N 0.22 tolerated(0.79) benign(0.114) TCGA-FW-A3TU-06 7 133622784 133622784 G A EXOC4 Missense_Mutation p.R723Q 0.41 deleterious(0.04) probably_damaging(0.989) TCGA-FW-A3TU-06 7 136700965 136700965 T C CHRM2 Silent p.F451F 0.45 TCGA-FW-A3TU-06 7 141619581 141619581 G A OR9A4 Silent p.R302R 0.50 TCGA-FW-A3TU-06 7 141721530 141721530 C T MGAM Missense_Mutation p.R235C 0.30 deleterious(0) benign(0.031) TCGA-FW-A3TU-06 7 141734623 141734623 C T MGAM Silent p.N647N 0.29 TCGA-FW-A3TU-06 7 142008762 142008762 G A TRBV3-1 Missense_Mutation p.V79I 0.45 tolerated(0.06) possibly_damaging(0.612) TCGA-FW-A3TU-06 7 142119896 142119896 C T TRBV7-7 Missense_Mutation p.G91R 0.39 tolerated(0.05) benign(0.424) TCGA-FW-A3TU-06 7 142459847 142459847 C T PRSS1 Silent p.I141I 0.35 TCGA-FW-A3TU-06 7 143747527 143747527 C T OR2A5 Silent p.F11F 0.36 TCGA-FW-A3TU-06 7 147092787 147092787 C T CNTNAP2 Nonsense_Mutation p.Q529* 0.40 TCGA-FW-A3TU-06 7 147844692 147844692 G A CNTNAP2 Silent p.E888E 0.40 TCGA-FW-A3TU-06 7 148112655 148112655 G A CNTNAP2 Missense_Mutation p.D1315N 0.45 deleterious(0) possibly_damaging(0.552) TCGA-FW-A3TU-06 7 150390440 150390440 G A GIMAP2 3'UTR 0.45 TCGA-FW-A3TU-06 7 150937275 150937275 C T SMARCD3 Missense_Mutation p.E366K 0.41 deleterious(0) benign(0.066) TCGA-FW-A3TU-06 7 150937276 150937276 C T SMARCD3 Silent p.E365E 0.40 TCGA-FW-A3TU-06 7 154862852 154862852 C T HTR5A-AS1 Missense_Mutation p.M54I 0.28 tolerated_low_confidence(0.45) benign(0.043) TCGA-FW-A3TU-06 7 157475611 157475611 G A PTPRN2 Silent p.L603L 0.33 TCGA-FW-A3TU-06 7 1607241 1607241 C T PSMG3 3'UTR 0.45 TCGA-FW-A3TU-06 7 16415867 16415867 C T ISPD Splice_Site p.X179_splice 0.29 TCGA-FW-A3TU-06 7 23768735 23768735 G A STK31 Missense_Mutation p.G117E 0.43 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 7 2473484 2473484 G A CHST12 Missense_Mutation p.G404S 0.40 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 7 2473485 2473485 G A CHST12 Missense_Mutation p.G404D 0.40 deleterious(0.01) probably_damaging(1) TCGA-FW-A3TU-06 7 24932042 24932042 G A OSBPL3 Missense_Mutation p.P17L 0.43 tolerated(0.12) probably_damaging(0.999) TCGA-FW-A3TU-06 7 27868343 27868343 G A TAX1BP1 Silent p.K755K 0.37 TCGA-FW-A3TU-06 7 27868344 27868344 G C TAX1BP1 Missense_Mutation p.V756L 0.37 tolerated(0.08) benign(0.023) TCGA-FW-A3TU-06 7 31124988 31124988 G A ADCYAP1R1 Silent p.A200A 0.41 TCGA-FW-A3TU-06 7 34818158 34818158 G A NPSR1 Missense_Mutation p.R122Q 0.47 tolerated(0.07) benign(0.041) TCGA-FW-A3TU-06 7 35129938 35129938 C T DPY19L2P1 RNA 0.36 TCGA-FW-A3TU-06 7 36763661 36763661 G A AOAH Silent p.S31S 0.48 TCGA-FW-A3TU-06 7 36763662 36763662 G A AOAH Missense_Mutation p.S31F 0.44 tolerated(0.7) benign(0.002) TCGA-FW-A3TU-06 7 37780616 37780616 G A GPR141 Missense_Mutation p.M207I 0.43 tolerated(0.06) benign(0.01) TCGA-FW-A3TU-06 7 38725306 38725306 G A FAM183B Silent p.V100V 0.39 TCGA-FW-A3TU-06 7 49842382 49842382 G A VWC2 Missense_Mutation p.E258K 0.39 deleterious(0.02) possibly_damaging(0.766) TCGA-FW-A3TU-06 7 64388724 64388724 C T ZNF273 Missense_Mutation p.H340Y 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-FW-A3TU-06 7 66098385 66098385 G A KCTD7 Missense_Mutation p.D90N 0.27 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 7 72745659 72745659 G A FKBP6 Splice_Site p.X157_splice 0.43 TCGA-FW-A3TU-06 7 7561561 7561561 C T COL28A1 Missense_Mutation p.G245E 0.49 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 7 75959290 75959290 C T YWHAG Silent p.Q116Q 0.40 TCGA-FW-A3TU-06 7 82508656 82508656 C T PCLO Missense_Mutation p.E4551K 0.39 unknown(0) TCGA-FW-A3TU-06 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.40 unknown(0) TCGA-FW-A3TU-06 7 82584437 82584437 C T PCLO Silent p.E1944E 0.28 TCGA-FW-A3TU-06 7 86493793 86493793 G A GRM3 3'UTR 0.25 TCGA-FW-A3TU-06 7 91672026 91672026 A T AKAP9 Missense_Mutation p.K1701N 0.37 probably_damaging(0.973) TCGA-FW-A3TU-06 7 91875779 91875779 G A ANKIB1 5'UTR 0.29 TCGA-FW-A3TU-06 7 92731610 92731610 G A SAMD9 Silent p.S1267S 0.44 TCGA-FW-A3TU-06 7 92760924 92760924 G A SAMD9L Missense_Mutation p.S1454F 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-FW-A3TU-06 7 93113264 93113264 C T CALCR Intron 0.32 TCGA-FW-A3TU-06 7 94293208 94293208 G A PEG10 Missense_Mutation p.D114N 0.46 deleterious(0) probably_damaging(0.962) TCGA-FW-A3TU-06 7 95039345 95039345 G A PON2 Missense_Mutation p.P188L 0.40 tolerated(0.61) benign(0.022) TCGA-FW-A3TU-06 7 95039346 95039346 G A PON2 Missense_Mutation p.P188S 0.39 tolerated(0.83) benign(0.015) TCGA-FW-A3TU-06 7 98254427 98254427 C T NPTX2 Silent p.I279I 0.43 TCGA-FW-A3TU-06 7 99217284 99217284 C T ZSCAN25 Missense_Mutation p.P19S 0.39 tolerated(0.06) benign(0.135) TCGA-FW-A3TU-06 7 99217285 99217285 C T ZSCAN25 Missense_Mutation p.P19L 0.39 tolerated(1) benign(0.33) TCGA-FW-A3TU-06 8 100654466 100654466 C T VPS13B Missense_Mutation p.P1908L 0.38 tolerated(0.05) benign(0.002) TCGA-FW-A3TU-06 8 103572848 103572848 G A ODF1 Silent p.S163S 0.42 TCGA-FW-A3TU-06 8 105436533 105436533 C T DPYS Missense_Mutation p.G393R 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 8 110510754 110510754 C T PKHD1L1 Missense_Mutation p.P3555S 0.29 tolerated(0.23) benign(0.209) TCGA-FW-A3TU-06 8 113301615 113301615 C T CSMD3 Missense_Mutation p.G3043R 0.35 deleterious(0.01) possibly_damaging(0.889) TCGA-FW-A3TU-06 8 121328221 121328221 C T COL14A1 Silent p.G1548G 0.35 TCGA-FW-A3TU-06 8 131140257 131140257 T A ASAP1 Missense_Mutation p.S433C 0.33 deleterious(0) probably_damaging(0.981) TCGA-FW-A3TU-06 8 134239782 134239782 C T WISP1 Silent p.I311I 0.41 TCGA-FW-A3TU-06 8 135490920 135490920 C T ZFAT Silent p.Q1179Q 0.36 TCGA-FW-A3TU-06 8 142486217 142486217 C T MROH5 Intron 0.25 TCGA-FW-A3TU-06 8 143559619 143559619 C T BAI1 Nonsense_Mutation p.R487* 0.29 TCGA-FW-A3TU-06 8 143784922 143784922 G A LY6K 3'UTR 0.67 TCGA-FW-A3TU-06 8 144893367 144893367 G A SCRIB Missense_Mutation p.P352L 0.30 possibly_damaging(0.856) TCGA-FW-A3TU-06 8 144991826 144991826 G A PLEC Missense_Mutation p.P4192S 0.44 probably_damaging(1) TCGA-FW-A3TU-06 8 144996418 144996418 A C PLEC Missense_Mutation p.V2661G 0.46 probably_damaging(0.968) TCGA-FW-A3TU-06 8 145223308 145223308 C T MROH1 Missense_Mutation p.R45C 0.41 tolerated(0.1) benign(0.004) TCGA-FW-A3TU-06 8 145772573 145772573 C T ARHGAP39 Missense_Mutation p.E633K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TU-06 8 17409438 17409438 G A SLC7A2 Missense_Mutation p.G373E 0.64 deleterious(0.01) probably_damaging(0.976) TCGA-FW-A3TU-06 8 1998971 1998971 G A MYOM2 Missense_Mutation p.E31K 0.40 deleterious(0.01) benign(0.168) TCGA-FW-A3TU-06 8 21977350 21977350 C T HR Missense_Mutation p.G967E 0.72 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 8 21977351 21977351 C T HR Missense_Mutation p.G967R 0.71 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 8 2857628 2857628 C T CSMD1 Silent p.P2685P 0.34 TCGA-FW-A3TU-06 8 35631824 35631824 G A UNC5D Missense_Mutation p.R829Q 0.61 tolerated(0.26) benign(0.229) TCGA-FW-A3TU-06 8 39103614 39103614 C T ADAM32 Missense_Mutation p.R611C 0.61 tolerated(0.16) possibly_damaging(0.735) TCGA-FW-A3TU-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.44 TCGA-FW-A3TU-06 8 41577323 41577323 G A ANK1 Silent p.V354V 0.47 TCGA-FW-A3TU-06 8 55534729 55534729 G A RP1 Missense_Mutation p.G223E 0.33 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.42 tolerated(0.85) benign(0.006) TCGA-FW-A3TU-06 8 55542055 55542055 T C RP1 Silent p.F1871F 0.48 TCGA-FW-A3TU-06 8 62212755 62212755 C T CLVS1 Silent p.I123I 0.37 TCGA-FW-A3TU-06 8 69358639 69358639 C T C8orf34 Missense_Mutation p.S184L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TU-06 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.41 TCGA-FW-A3TU-06 8 7680928 7680928 C T DEFB105A Missense_Mutation p.D30N 0.15 deleterious(0.01) benign(0.048) TCGA-FW-A3TU-06 8 99441484 99441484 C T KCNS2 Missense_Mutation p.A426V 0.42 deleterious(0.04) probably_damaging(0.978) TCGA-FW-A3TU-06 9 107298816 107298816 C T OR13C3 Silent p.L93L 0.35 TCGA-FW-A3TU-06 9 107361077 107361077 G A OR13C5 Silent p.F206F 0.37 TCGA-FW-A3TU-06 9 107578495 107578495 G A ABCA1 Missense_Mutation p.H1223Y 0.42 deleterious(0) possibly_damaging(0.492) TCGA-FW-A3TU-06 9 109771849 109771849 G A ZNF462 Missense_Mutation p.G2405R 0.42 possibly_damaging(0.617) TCGA-FW-A3TU-06 9 114134036 114134036 G A KIAA0368 Silent p.S1712S 0.69 TCGA-FW-A3TU-06 9 114134037 114134037 G A KIAA0368 Missense_Mutation p.S1712F 0.70 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 9 117568305 117568305 C T TNFSF15 5'UTR 0.53 TCGA-FW-A3TU-06 9 119739040 119739040 T A ASTN2 Missense_Mutation p.Y488F 0.27 deleterious(0.01) unknown(0) TCGA-FW-A3TU-06 9 120475301 120475301 G A TLR4 Missense_Mutation p.D299N 0.29 tolerated(0.68) benign(0.001) TCGA-FW-A3TU-06 9 121929878 121929878 G A BRINP1 Silent p.I590I 0.35 TCGA-FW-A3TU-06 9 123165123 123165123 T C CDK5RAP2 Silent p.Q1756Q 0.44 TCGA-FW-A3TU-06 9 125273352 125273352 C T OR1J2 Missense_Mutation p.S91L 0.38 deleterious_low_confidence(0.01) benign(0.032) TCGA-FW-A3TU-06 9 125438296 125438296 G A OR1L3 Missense_Mutation p.M296I 0.22 tolerated(0.21) benign(0.033) TCGA-FW-A3TU-06 9 127255311 127255311 C T NR5A1 Missense_Mutation p.E330K 0.59 tolerated(0.19) benign(0.121) TCGA-FW-A3TU-06 9 130270437 130270437 G A FAM129B Missense_Mutation p.R493W 0.44 deleterious(0) probably_damaging(0.954) TCGA-FW-A3TU-06 9 131371229 131371229 C T SPTAN1 Missense_Mutation p.S1523F 0.41 tolerated(0.05) unknown(0) TCGA-FW-A3TU-06 9 131768868 131768868 A G NUP188 Missense_Mutation p.K1721E 0.43 tolerated(0.1) probably_damaging(0.937) TCGA-FW-A3TU-06 9 137676919 137676919 C T COL5A1 Missense_Mutation p.P857S 0.42 unknown(0) TCGA-FW-A3TU-06 9 138377655 138377655 C T PPP1R26 Silent p.T433T 0.45 TCGA-FW-A3TU-06 9 139317677 139317677 G A PMPCA Silent p.K513K 0.35 TCGA-FW-A3TU-06 9 139410090 139410090 C T NOTCH1 Missense_Mutation p.G583D 0.43 deleterious(0) probably_damaging(0.973) TCGA-FW-A3TU-06 9 140151503 140151503 C T NELFB Silent p.G198G 0.41 TCGA-FW-A3TU-06 9 140173349 140173349 G A TOR4A Missense_Mutation p.D70N 0.50 tolerated(0.63) benign(0) TCGA-FW-A3TU-06 9 19049678 19049678 G A RRAGA Silent p.K7K 0.80 TCGA-FW-A3TU-06 9 34610831 34610831 G A RPP25L Nonsense_Mutation p.R155* 0.47 TCGA-FW-A3TU-06 9 34610832 34610832 G A RPP25L Silent p.S154S 0.46 TCGA-FW-A3TU-06 9 35805956 35805956 T C NPR2 Missense_Mutation p.L726S 0.39 deleterious(0.04) benign(0.213) TCGA-FW-A3TU-06 9 38571906 38571906 C T ANKRD18A 3'UTR 0.32 TCGA-FW-A3TU-06 9 4118187 4118187 C T GLIS3 Missense_Mutation p.E431K 0.82 deleterious(0.04) possibly_damaging(0.555) TCGA-FW-A3TU-06 9 72130978 72130978 C T APBA1 Silent p.Q383Q 0.74 TCGA-FW-A3TU-06 9 73152280 73152280 C T TRPM3 Missense_Mutation p.R1238K 0.77 tolerated(0.68) possibly_damaging(0.812) TCGA-FW-A3TU-06 9 77684849 77684849 G A NMRK1 Silent p.P93P 0.63 TCGA-FW-A3TU-06 9 78925602 78925602 C T PCSK5 Missense_Mutation p.S1213F 0.80 tolerated(0.05) possibly_damaging(0.482) TCGA-FW-A3TU-06 9 79321790 79321790 C T PRUNE2 Nonsense_Mutation p.W1800* 0.64 TCGA-FW-A3TU-06 9 79321791 79321791 C T PRUNE2 Nonsense_Mutation p.W1800* 0.64 TCGA-FW-A3TU-06 9 84606122 84606122 C T SPATA31D1 Missense_Mutation p.P246L 0.68 deleterious(0.01) probably_damaging(0.992) TCGA-FW-A3TU-06 9 84607227 84607227 G C SPATA31D1 Silent p.R614R 0.75 TCGA-FW-A3TU-06 9 88204514 88204514 C G AGTPBP1 Missense_Mutation p.G844A 0.69 deleterious(0) probably_damaging(0.998) TCGA-FW-A3TU-06 9 96425206 96425206 G T PHF2 Silent p.L572L 0.72 TCGA-FW-A3TU-06 9 96425208 96425208 G A PHF2 Missense_Mutation p.S573N 0.72 tolerated(0.13) unknown(0) TCGA-FW-A3TU-06 X 101971114 101971114 C T GPRASP2 Silent p.A439A 0.61 TCGA-FW-A3TU-06 X 102337987 102337987 T C NXF3 Silent p.Q212Q 0.73 TCGA-FW-A3TU-06 X 105150504 105150504 G A NRK Missense_Mutation p.D315N 0.50 tolerated(0.46) benign(0.001) TCGA-FW-A3TU-06 X 105167132 105167132 G A NRK Missense_Mutation p.G879E 0.76 deleterious(0) probably_damaging(1) TCGA-FW-A3TU-06 X 105450269 105450269 C T MUM1L1 Missense_Mutation p.P282S 0.61 deleterious(0.02) probably_damaging(1) TCGA-FW-A3TU-06 X 107413865 107413865 C T COL4A6 Missense_Mutation p.G1157E 0.65 probably_damaging(0.999) TCGA-FW-A3TU-06 X 120009153 120009153 G A CT47B1 Silent p.F124F 0.60 TCGA-FW-A3TU-06 X 140995044 140995044 G A MAGEC1 Silent p.G618G 0.70 TCGA-FW-A3TU-06 X 140995045 140995045 G A MAGEC1 Missense_Mutation p.E619K 0.70 deleterious_low_confidence(0.01) benign(0) TCGA-FW-A3TU-06 X 149639731 149639731 C T MAMLD1 Missense_Mutation p.A604V 0.67 tolerated(0.06) possibly_damaging(0.88) TCGA-FW-A3TU-06 X 149639732 149639732 C T MAMLD1 Silent p.A604A 0.67 TCGA-FW-A3TU-06 X 149931115 149931115 G A MTMR1 Silent p.R637R 0.65 TCGA-FW-A3TU-06 X 152818550 152818550 G A ATP2B3 Silent p.R627R 0.71 TCGA-FW-A3TU-06 X 153141303 153141303 G A L1CAM 5'UTR 0.71 TCGA-FW-A3TU-06 X 153588910 153588910 G A FLNA Missense_Mutation p.P1085S 0.78 tolerated(0.06) benign(0.202) TCGA-FW-A3TU-06 X 154009980 154009980 G A MPP1 Silent p.F348F 0.70 TCGA-FW-A3TU-06 X 154290097 154290097 G A CMC4 3'UTR 0.70 TCGA-FW-A3TU-06 X 1584508 1584508 C T P2RY8 Missense_Mutation p.R315K 0.65 tolerated(0.28) benign(0.001) TCGA-FW-A3TU-06 X 1719913 1719913 C T AKAP17A Missense_Mutation p.A505V 0.62 tolerated_low_confidence(1) unknown(0) TCGA-FW-A3TU-06 X 18822094 18822094 C T PPEF1 Missense_Mutation p.P384S 0.72 deleterious(0.01) possibly_damaging(0.764) TCGA-FW-A3TU-06 X 26212662 26212662 C T MAGEB6 Silent p.F233F 0.70 TCGA-FW-A3TU-06 X 3241461 3241461 C T MXRA5 Silent p.E755E 0.71 TCGA-FW-A3TU-06 X 35993912 35993912 G A CXorf22 Missense_Mutation p.M865I 0.67 tolerated(0.54) benign(0.002) TCGA-FW-A3TU-06 X 37026489 37026489 G A FAM47C Silent p.G2G 0.73 TCGA-FW-A3TU-06 X 49958332 49958332 C T AKAP4 Missense_Mutation p.M344I 0.76 deleterious(0.02) benign(0.111) TCGA-FW-A3TU-06 X 53657952 53657952 C T HUWE1 Missense_Mutation p.G266D 0.70 possibly_damaging(0.647) TCGA-FW-A3TU-06 X 54014369 54014369 C G PHF8 Missense_Mutation p.R616T 0.64 tolerated(0.17) benign(0.057) TCGA-FW-A3TU-06 X 54467159 54467159 C T TSR2 Nonsense_Mutation p.Q40* 0.10 TCGA-FW-A3TU-06 X 64722321 64722321 C T ZC3H12B Silent p.L581L 0.83 TCGA-FW-A3TU-06 X 66931363 66931363 G A AR Missense_Mutation p.E669K 0.89 tolerated(0.06) benign(0.082) TCGA-FW-A3TU-06 X 68060446 68060446 C T EFNB1 Silent p.I330I 0.84 TCGA-FW-A3TU-06 X 70325935 70325935 C T CXorf65 Missense_Mutation p.M55I 0.81 tolerated(0.33) benign(0.069) TCGA-FW-A3TU-06 X 70601712 70601712 C T TAF1 Missense_Mutation p.R514W 0.71 tolerated(0.1) benign(0.002) TCGA-FW-A3TU-06 X 73047455 73047455 C A XIST RNA 0.62 TCGA-FW-A3TU-06 X 78011251 78011251 C T LPAR4 Silent p.I295I 0.78 TCGA-FW-A3TU-06 X 99945636 99945636 C T SYTL4 Splice_Site p.X214_splice 0.70 TCGA-FW-A3TV-06 10 118969155 118969155 G A KCNK18 Missense_Mutation p.R167Q 0.41 tolerated(0.27) benign(0.005) TCGA-FW-A3TV-06 10 12160760 12160760 C T DHTKD1 Silent p.L805L 0.32 TCGA-FW-A3TV-06 10 123969945 123969945 G A TACC2 Missense_Mutation p.G2002D 0.41 probably_damaging(0.99) TCGA-FW-A3TV-06 10 14896213 14896213 T G HSPA14 Missense_Mutation p.L275W 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 10 27538505 27538505 C T RP11-85G18.6 Intron 0.31 TCGA-FW-A3TV-06 10 28260241 28260241 C T ARMC4 Missense_Mutation p.G313E 0.26 tolerated(1) benign(0.001) TCGA-FW-A3TV-06 10 38121086 38121086 C A ZNF248 Missense_Mutation p.Q399H 0.39 deleterious(0.04) possibly_damaging(0.78) TCGA-FW-A3TV-06 10 43610140 43610140 G A RET Missense_Mutation p.D698N 0.29 tolerated(0.07) possibly_damaging(0.573) TCGA-FW-A3TV-06 10 94837047 94837047 C T CYP26A1 Missense_Mutation p.H494Y 0.42 tolerated(0.71) benign(0) TCGA-FW-A3TV-06 11 105623742 105623742 T A GRIA4 Missense_Mutation p.F95I 0.27 tolerated(0.14) benign(0.19) TCGA-FW-A3TV-06 11 10590080 10590080 C T LYVE1 5'UTR 0.30 TCGA-FW-A3TV-06 11 108064742 108064742 G A NPAT Silent p.S53S 0.20 TCGA-FW-A3TV-06 11 117100314 117100314 G A PCSK7 Silent p.L83L 0.30 TCGA-FW-A3TV-06 11 1272041 1272041 G A MUC5B Missense_Mutation p.G4644E 0.19 unknown(0) TCGA-FW-A3TV-06 11 128709513 128709513 C T KCNJ1 Missense_Mutation p.G228E 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 11 128781675 128781675 G A KCNJ5 Silent p.L169L 0.30 TCGA-FW-A3TV-06 11 129739745 129739745 G A NFRKB Missense_Mutation p.R1084C 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A3TV-06 11 13736124 13736124 C T FAR1 Silent p.L342L 0.36 TCGA-FW-A3TV-06 11 17542898 17542898 C T USH1C Missense_Mutation p.M360I 0.27 tolerated_low_confidence(0.62) benign(0.001) TCGA-FW-A3TV-06 11 18266985 18266985 C T SAA2 Nonsense_Mutation p.W103* 0.27 TCGA-FW-A3TV-06 11 18955501 18955501 G A MRGPRX1 Silent p.S277S 0.40 TCGA-FW-A3TV-06 11 20869165 20869165 G A NELL1 Silent p.E124E 0.23 TCGA-FW-A3TV-06 11 2356706 2356706 C T CD81-AS1 Intron 0.34 TCGA-FW-A3TV-06 11 314074 314074 C T IFITM1 5'UTR 0.37 TCGA-FW-A3TV-06 11 45891668 45891668 C T CRY2 Missense_Mutation p.S441F 0.26 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TV-06 11 55321932 55321932 T C OR4C15 Silent p.F50F 0.27 TCGA-FW-A3TV-06 11 56143815 56143815 C T OR8U1 Missense_Mutation p.S239L 0.34 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 11 56345162 56345162 G A OR5M10 Silent p.F12F 0.27 TCGA-FW-A3TV-06 11 56468246 56468246 C T OR9G1 Missense_Mutation p.P128L 0.17 deleterious(0.01) benign(0.32) TCGA-FW-A3TV-06 11 57004527 57004527 C T APLNR 5'UTR 0.35 TCGA-FW-A3TV-06 11 5730981 5730981 C T TRIM22 3'UTR 0.35 TCGA-FW-A3TV-06 11 58601949 58601949 G A GLYATL2 Missense_Mutation p.P280S 0.15 tolerated(0.41) benign(0.053) TCGA-FW-A3TV-06 11 5968870 5968870 C T OR56A3 Silent p.F98F 0.30 TCGA-FW-A3TV-06 11 62287510 62287510 G A AHNAK Silent p.F4793F 0.32 TCGA-FW-A3TV-06 11 62375218 62375218 G A EML3 Missense_Mutation p.H428Y 0.31 deleterious(0) possibly_damaging(0.61) TCGA-FW-A3TV-06 11 6263042 6263042 G A CNGA4 Intron 0.41 TCGA-FW-A3TV-06 11 63067088 63067088 C T SLC22A10 Silent p.L353L 0.31 TCGA-FW-A3TV-06 11 64522183 64522183 G A PYGM Silent p.F327F 0.11 TCGA-FW-A3TV-06 11 65793414 65793414 C T CATSPER1 Missense_Mutation p.G146E 0.38 tolerated(0.14) benign(0.001) TCGA-FW-A3TV-06 11 7334696 7334696 G A SYT9 Missense_Mutation p.E190K 0.25 deleterious(0.01) benign(0.219) TCGA-FW-A3TV-06 11 74799928 74799928 G A OR2AT4 Silent p.I277I 0.31 TCGA-FW-A3TV-06 11 7847156 7847156 G A OR5P3 Missense_Mutation p.R122C 0.28 deleterious(0.01) benign(0.165) TCGA-FW-A3TV-06 11 7960717 7960717 C T OR10A3 Silent p.A117A 0.25 TCGA-FW-A3TV-06 11 8008878 8008878 C T EIF3F 5'UTR 0.31 TCGA-FW-A3TV-06 11 89431672 89431672 G A FOLH1B RNA 0.27 TCGA-FW-A3TV-06 11 93815726 93815726 G A HEPHL1 Missense_Mutation p.R620Q 0.25 tolerated(0.08) benign(0.004) TCGA-FW-A3TV-06 12 105238262 105238262 G A SLC41A2 Silent p.G508G 0.16 TCGA-FW-A3TV-06 12 10961759 10961759 T C TAS2R9 Missense_Mutation p.R306G 0.30 tolerated(0.83) benign(0.001) TCGA-FW-A3TV-06 12 110013874 110013874 C T MVK Silent p.D50D 0.30 TCGA-FW-A3TV-06 12 113717996 113717996 C T TPCN1 Silent p.F518F 0.30 TCGA-FW-A3TV-06 12 11506765 11506765 C T PRB1 Missense_Mutation p.R91Q 0.15 tolerated_low_confidence(0.33) unknown(0) TCGA-FW-A3TV-06 12 118199091 118199091 C T KSR2 Silent p.P237P 0.30 TCGA-FW-A3TV-06 12 12022507 12022507 C T ETV6 Silent p.L205L 0.30 TCGA-FW-A3TV-06 12 122674734 122674734 G A LRRC43 Missense_Mutation p.M240I 0.34 tolerated(0.16) possibly_damaging(0.596) TCGA-FW-A3TV-06 12 130855736 130855736 C T PIWIL1 Silent p.I779I 0.27 TCGA-FW-A3TV-06 12 14947652 14947652 A T WBP11 Silent p.V180V 0.31 TCGA-FW-A3TV-06 12 21427477 21427477 G A SLCO1A2 Silent p.S573S 0.43 TCGA-FW-A3TV-06 12 21713345 21713345 C T GYS2 Missense_Mutation p.G382R 0.24 deleterious(0.02) probably_damaging(1) TCGA-FW-A3TV-06 12 22005154 22005154 G A ABCC9 Silent p.I882I 0.36 TCGA-FW-A3TV-06 12 30784923 30784923 G A IPO8 Silent p.A974A 0.36 TCGA-FW-A3TV-06 12 4736271 4736271 C T AKAP3 Silent p.R599R 0.24 TCGA-FW-A3TV-06 12 56295519 56295519 G A WIBG 3'UTR 0.38 TCGA-FW-A3TV-06 12 56515236 56515236 C T ZC3H10 Missense_Mutation p.P297L 0.38 deleterious(0.01) possibly_damaging(0.549) TCGA-FW-A3TV-06 12 56629017 56629017 G A SLC39A5 Silent p.L237L 0.35 TCGA-FW-A3TV-06 12 57849380 57849380 G A INHBE Missense_Mutation p.G21R 0.19 tolerated(0.35) benign(0.027) TCGA-FW-A3TV-06 12 6062751 6062751 C T VWF Missense_Mutation p.E2633K 0.26 tolerated(0.84) possibly_damaging(0.874) TCGA-FW-A3TV-06 12 6457906 6457906 G A SCNN1A Missense_Mutation p.S598F 0.28 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TV-06 12 70954541 70954541 G A PTPRB Nonsense_Mutation p.Q1448* 0.39 TCGA-FW-A3TV-06 12 78542698 78542698 A T NAV3 Missense_Mutation p.N1595I 0.29 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 12 81688675 81688675 C T PPFIA2 Missense_Mutation p.R955Q 0.32 deleterious(0.01) possibly_damaging(0.851) TCGA-FW-A3TV-06 12 91502142 91502142 G A LUM Silent p.V205V 0.26 TCGA-FW-A3TV-06 12 93175731 93175731 C T EEA1 Missense_Mutation p.E1111K 0.24 tolerated(0.15) benign(0.103) TCGA-FW-A3TV-06 13 26621161 26621161 G A SHISA2 Silent p.V126V 0.25 TCGA-FW-A3TV-06 13 33635388 33635388 G A KL Silent p.G724G 0.33 TCGA-FW-A3TV-06 13 33703378 33703378 T A STARD13 Missense_Mutation p.K479I 0.38 deleterious(0.03) probably_damaging(0.933) TCGA-FW-A3TV-06 13 35733382 35733382 G A NBEA Missense_Mutation p.R1025Q 0.30 tolerated_low_confidence(0.17) benign(0.211) TCGA-FW-A3TV-06 13 51501579 51501579 G A RNASEH2B Missense_Mutation p.G34E 0.25 tolerated(0.21) benign(0.138) TCGA-FW-A3TV-06 13 58298922 58298922 C T PCDH17 Missense_Mutation p.P992S 0.26 tolerated(0.22) benign(0.028) TCGA-FW-A3TV-06 13 75861016 75861016 G A TBC1D4 Missense_Mutation p.P1270L 0.29 deleterious(0) possibly_damaging(0.764) TCGA-FW-A3TV-06 13 84454420 84454420 T C SLITRK1 Missense_Mutation p.N408S 0.36 tolerated(0.16) benign(0.246) TCGA-FW-A3TV-06 13 98009818 98009818 C T MBNL2 Missense_Mutation p.P296L 0.30 deleterious(0) possibly_damaging(0.777) TCGA-FW-A3TV-06 14 105410776 105410776 T A AHNAK2 Missense_Mutation p.D3671V 0.33 benign(0.26) TCGA-FW-A3TV-06 14 106237699 106237699 G A IGHG3 Silent p.S15S 0.32 TCGA-FW-A3TV-06 14 106877724 106877724 G A IGHV4-39 Silent p.S90S 0.24 TCGA-FW-A3TV-06 14 20845562 20845562 C T TEP1 Missense_Mutation p.D1989N 0.35 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TV-06 14 22102920 22102920 G A OR10G2 Silent p.L27L 0.39 TCGA-FW-A3TV-06 14 23587926 23587926 C T CEBPE Silent p.R125R 0.22 TCGA-FW-A3TV-06 14 24590594 24590594 C T DCAF11 Missense_Mutation p.P423S 0.22 tolerated(0.4) benign(0.017) TCGA-FW-A3TV-06 14 50360612 50360612 C T ARF6 Missense_Mutation p.T53I 0.32 deleterious_low_confidence(0.01) benign(0.001) TCGA-FW-A3TV-06 14 58955410 58955410 C T KIAA0586 Missense_Mutation p.P1253L 0.27 deleterious(0.03) possibly_damaging(0.502) TCGA-FW-A3TV-06 14 64556386 64556386 C T SYNE2 Missense_Mutation p.S3922L 0.29 possibly_damaging(0.843) TCGA-FW-A3TV-06 14 73718532 73718532 C T PAPLN Silent p.P250P 0.23 TCGA-FW-A3TV-06 14 73967417 73967417 C T HEATR4 Missense_Mutation p.G708E 0.26 deleterious(0.03) probably_damaging(1) TCGA-FW-A3TV-06 14 75278336 75278336 C T YLPM1 Nonsense_Mutation p.R1748* 0.27 TCGA-FW-A3TV-06 14 76045384 76045384 G A FLVCR2 Silent p.A23A 0.26 TCGA-FW-A3TV-06 14 76045385 76045385 G A FLVCR2 Missense_Mutation p.D24N 0.27 tolerated_low_confidence(0.26) benign(0.002) TCGA-FW-A3TV-06 14 76150128 76150128 T G TTLL5 Intron 0.38 TCGA-FW-A3TV-06 14 77950883 77950883 G A ISM2 Missense_Mutation p.P137L 0.33 deleterious(0.05) unknown(0) TCGA-FW-A3TV-06 14 89168884 89168884 C T EML5 Missense_Mutation p.R715Q 0.40 deleterious(0.04) probably_damaging(0.919) TCGA-FW-A3TV-06 14 93275750 93275750 C A GOLGA5 Missense_Mutation p.A293D 0.20 deleterious(0) possibly_damaging(0.609) TCGA-FW-A3TV-06 15 22473351 22473351 C T IGHV4OR15-8 Translation_Start_Site p.M1? 0.06 deleterious(0.01) possibly_damaging(0.642) TCGA-FW-A3TV-06 15 40290939 40290939 C T EIF2AK4 Missense_Mutation p.S959L 0.54 tolerated(0.27) benign(0.051) TCGA-FW-A3TV-06 15 43893679 43893679 C T STRC Missense_Mutation p.G1539E 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-FW-A3TV-06 15 50271986 50271986 C T ATP8B4 Missense_Mutation p.G288R 0.45 deleterious(0.02) probably_damaging(1) TCGA-FW-A3TV-06 15 65490353 65490353 C T CILP Silent p.R757R 0.32 TCGA-FW-A3TV-06 15 66215174 66215174 G A MEGF11 Silent p.P603P 0.16 TCGA-FW-A3TV-06 15 74481511 74481511 G A STRA6 Silent p.S384S 0.38 TCGA-FW-A3TV-06 15 76146731 76146731 C T UBE2Q2 Missense_Mutation p.S62F 0.21 deleterious(0) probably_damaging(0.996) TCGA-FW-A3TV-06 15 89698693 89698693 C T ABHD2 Missense_Mutation p.R156W 0.43 deleterious(0) probably_damaging(0.992) TCGA-FW-A3TV-06 16 111654 111654 C G RHBDF1 Missense_Mutation p.V417L 0.28 deleterious(0.02) benign(0.009) TCGA-FW-A3TV-06 16 15818851 15818851 T C MYH11 Splice_Site p.X1294_splice 0.21 TCGA-FW-A3TV-06 16 28883938 28883938 C T SH2B1 Silent p.H603H 0.26 TCGA-FW-A3TV-06 16 3255008 3255008 C T OR1F1 Silent p.T254T 0.25 TCGA-FW-A3TV-06 16 57931768 57931768 G A CNGB1 Silent p.V1009V 0.27 TCGA-FW-A3TV-06 16 66918184 66918184 C T PDP2 5'UTR 0.30 TCGA-FW-A3TV-06 16 67228866 67228866 C T E2F4 Missense_Mutation p.P264L 0.15 tolerated(0.06) benign(0.001) TCGA-FW-A3TV-06 16 68156440 68156440 C A NFATC3 Silent p.G218G 0.32 TCGA-FW-A3TV-06 16 72055148 72055148 C T DHODH Missense_Mutation p.P215S 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 16 89777111 89777111 C A VPS9D1 Nonsense_Mutation p.E381* 0.21 TCGA-FW-A3TV-06 17 11593400 11593400 C T DNAH9 Missense_Mutation p.R1421W 0.33 possibly_damaging(0.846) TCGA-FW-A3TV-06 17 16527594 16527594 G A ZNF624 Silent p.G202G 0.33 TCGA-FW-A3TV-06 17 17700781 17700781 G T RAI1 Missense_Mutation p.A1507S 0.33 tolerated(0.11) benign(0.008) TCGA-FW-A3TV-06 17 17700783 17700783 C T RAI1 Silent p.A1507A 0.34 TCGA-FW-A3TV-06 17 18022438 18022438 G A MYO15A Silent p.V108V 0.35 TCGA-FW-A3TV-06 17 2923836 2923836 C T RAP1GAP2 Silent p.L566L 0.34 TCGA-FW-A3TV-06 17 33454248 33454248 G A FNDC8 Missense_Mutation p.E133K 0.30 tolerated_low_confidence(0.3) benign(0.002) TCGA-FW-A3TV-06 17 33585883 33585883 C T SLFN5 Silent p.I58I 0.33 TCGA-FW-A3TV-06 17 33690598 33690598 A T SLFN11 Missense_Mutation p.L77I 0.35 tolerated(0.14) probably_damaging(0.999) TCGA-FW-A3TV-06 17 37899506 37899506 C T GRB7 Silent p.F202F 0.25 TCGA-FW-A3TV-06 17 39684562 39684562 G A KRT19 5'Flank 0.23 TCGA-FW-A3TV-06 17 4046014 4046014 G A ZZEF1 Missense_Mutation p.A59V 0.31 tolerated(0.1) probably_damaging(0.97) TCGA-FW-A3TV-06 17 40940743 40940743 C A WNK4 Silent p.T695T 0.43 TCGA-FW-A3TV-06 17 41020607 41020607 C T AOC4P RNA 0.23 TCGA-FW-A3TV-06 17 4451500 4451500 A C MYBBP1A Missense_Mutation p.N554K 0.26 tolerated(0.1) benign(0.031) TCGA-FW-A3TV-06 17 45384967 45384967 A G ITGB3 Silent p.K755K 0.37 TCGA-FW-A3TV-06 17 48559536 48559536 C T RSAD1 Missense_Mutation p.L187F 0.32 deleterious(0.01) possibly_damaging(0.853) TCGA-FW-A3TV-06 17 4926878 4926878 C T KIF1C Missense_Mutation p.S915L 0.24 tolerated_low_confidence(0.06) benign(0.007) TCGA-FW-A3TV-06 17 57955475 57955475 C T TUBD1 Missense_Mutation p.R253Q 0.19 tolerated(0.07) benign(0.024) TCGA-FW-A3TV-06 17 62041100 62041100 G A SCN4A Missense_Mutation p.S513L 0.35 tolerated(0.19) benign(0.001) TCGA-FW-A3TV-06 17 67411023 67411023 G A MAP2K6 5'UTR 0.31 TCGA-FW-A3TV-06 17 7097293 7097293 A C DLG4 Nonsense_Mutation p.L545* 0.26 TCGA-FW-A3TV-06 17 72943148 72943148 G A OTOP3 Missense_Mutation p.E400K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TV-06 17 76503719 76503719 G A DNAH17 Silent p.L1465L 0.38 TCGA-FW-A3TV-06 17 80352403 80352403 C T OGFOD3 Silent p.R280R 0.28 TCGA-FW-A3TV-06 18 20837244 20837244 C T CABLES1 Silent p.F605F 0.31 TCGA-FW-A3TV-06 18 29793125 29793125 G A MEP1B Silent p.V394V 0.35 TCGA-FW-A3TV-06 18 43437862 43437862 G A EPG5 Silent p.I2466I 0.28 TCGA-FW-A3TV-06 18 44560257 44560257 G A TCEB3B Missense_Mutation p.S460L 0.28 deleterious(0.03) benign(0.109) TCGA-FW-A3TV-06 18 48473476 48473476 G A ME2 Silent p.R559R 0.31 TCGA-FW-A3TV-06 18 61305045 61305045 C T SERPINB4 Missense_Mutation p.E361K 0.25 tolerated(0.07) benign(0.27) TCGA-FW-A3TV-06 18 61309074 61309074 C T SERPINB4 Missense_Mutation p.E91K 0.36 tolerated(0.08) benign(0.172) TCGA-FW-A3TV-06 19 11280856 11280856 G A KANK2 Silent p.A768A 0.39 TCGA-FW-A3TV-06 19 11280857 11280857 G A KANK2 Missense_Mutation p.A768V 0.38 deleterious(0.01) benign(0.329) TCGA-FW-A3TV-06 19 1220494 1220494 G T STK11 Missense_Mutation p.G196V 0.36 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 19 20045651 20045651 C T ZNF93 3'UTR 0.66 TCGA-FW-A3TV-06 19 24010424 24010424 T G RPSAP58 Missense_Mutation p.L154R 0.42 deleterious(0) probably_damaging(0.984) TCGA-FW-A3TV-06 19 33608840 33608840 C T GPATCH1 Missense_Mutation p.S769F 0.56 deleterious(0) probably_damaging(0.935) TCGA-FW-A3TV-06 19 33892682 33892682 G A PEPD Silent p.A304A 0.21 TCGA-FW-A3TV-06 19 36004432 36004432 C T DMKN 5'UTR 0.56 TCGA-FW-A3TV-06 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.47 deleterious(0.04) benign(0.382) TCGA-FW-A3TV-06 19 3964251 3964251 C T DAPK3 Missense_Mutation p.E182K 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-FW-A3TV-06 19 41009884 41009884 C T SPTBN4 Missense_Mutation p.R504W 0.43 deleterious(0) probably_damaging(0.954) TCGA-FW-A3TV-06 19 42351641 42351641 G A DMRTC2 Missense_Mutation p.G49S 0.45 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 19 45992717 45992717 G A RTN2 Silent p.I376I 0.57 TCGA-FW-A3TV-06 19 55045209 55045209 C T KIR3DX1 Missense_Mutation p.S110F 0.45 deleterious(0.03) possibly_damaging(0.691) TCGA-FW-A3TV-06 19 9071650 9071650 C T MUC16 Missense_Mutation p.E5266K 0.42 unknown(0) TCGA-FW-A3TV-06 19 9639548 9639548 A G ZNF426 Silent p.P391P 0.48 TCGA-FW-A3TV-06 1 1115635 1115635 C T TTLL10 Missense_Mutation p.L141F 0.60 tolerated_low_confidence(0.7) benign(0.007) TCGA-FW-A3TV-06 1 112525211 112525211 C T KCND3 Silent p.V46V 0.61 TCGA-FW-A3TV-06 1 152084955 152084955 C T TCHH Nonsense_Mutation p.W246* 0.34 TCGA-FW-A3TV-06 1 152383101 152383101 G A CRNN Nonsense_Mutation p.Q153* 0.27 TCGA-FW-A3TV-06 1 158325189 158325189 G A CD1E Missense_Mutation p.G152E 0.21 tolerated(0.05) possibly_damaging(0.613) TCGA-FW-A3TV-06 1 159273754 159273754 G A FCER1A Nonsense_Mutation p.W38* 0.29 TCGA-FW-A3TV-06 1 161682926 161682926 C T FCRLA Missense_Mutation p.S302L 0.30 deleterious(0.04) benign(0.019) TCGA-FW-A3TV-06 1 162351853 162351853 G A RP11-565P22.6 Silent p.L163L 0.40 TCGA-FW-A3TV-06 1 169267804 169267804 G A NME7 Missense_Mutation p.S213F 0.33 deleterious(0) possibly_damaging(0.608) TCGA-FW-A3TV-06 1 169672428 169672428 C T SELL Missense_Mutation p.G320E 0.14 deleterious(0.01) possibly_damaging(0.658) TCGA-FW-A3TV-06 1 173486701 173486701 G A SLC9C2 Missense_Mutation p.T961I 0.37 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TV-06 1 174606561 174606561 C T RABGAP1L Missense_Mutation p.P587S 0.27 deleterious(0.02) probably_damaging(0.932) TCGA-FW-A3TV-06 1 177899040 177899040 G A SEC16B Missense_Mutation p.R1046W 0.45 deleterious(0) possibly_damaging(0.874) TCGA-FW-A3TV-06 1 178820449 178820449 T A ANGPTL1 Missense_Mutation p.N431Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 1 196311248 196311248 C T KCNT2 Missense_Mutation p.G505E 0.40 deleterious(0) possibly_damaging(0.818) TCGA-FW-A3TV-06 1 197168858 197168858 G A ZBTB41 Missense_Mutation p.S249F 0.42 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-FW-A3TV-06 1 207106358 207106358 C T PIGR Missense_Mutation p.G620E 0.32 tolerated(0.29) benign(0.037) TCGA-FW-A3TV-06 1 220387315 220387315 C T RAB3GAP2 Missense_Mutation p.E63K 0.26 deleterious(0.04) benign(0.1) TCGA-FW-A3TV-06 1 226924619 226924619 G A ITPKB Missense_Mutation p.R181C 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FW-A3TV-06 1 226924620 226924620 G A ITPKB Silent p.F180F 0.35 TCGA-FW-A3TV-06 1 228474636 228474636 G A OBSCN Missense_Mutation p.G3576D 0.30 probably_damaging(0.998) TCGA-FW-A3TV-06 1 237729923 237729923 G A RYR2 Missense_Mutation p.E1091K 0.34 possibly_damaging(0.824) TCGA-FW-A3TV-06 1 248367224 248367224 G A OR2M3 Silent p.L285L 0.39 TCGA-FW-A3TV-06 1 248637521 248637521 G A OR2T3 Silent p.L290L 0.13 TCGA-FW-A3TV-06 1 248737189 248737189 C T OR2T34 Silent p.L290L 0.25 TCGA-FW-A3TV-06 1 27661976 27661976 A T TMEM222 3'UTR 0.41 TCGA-FW-A3TV-06 1 57372379 57372379 C T C8A Missense_Mutation p.S379F 0.49 tolerated(0.07) benign(0.182) TCGA-FW-A3TV-06 1 64089270 64089270 T C PGM1 Missense_Mutation p.F47L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 1 66098864 66098864 G A LEPR Intron 0.45 TCGA-FW-A3TV-06 1 76355048 76355048 G A MSH4 Missense_Mutation p.M740I 0.43 deleterious(0.01) probably_damaging(0.928) TCGA-FW-A3TV-06 1 85331687 85331687 A C LPAR3 Missense_Mutation p.F39L 0.46 tolerated(0.42) benign(0.006) TCGA-FW-A3TV-06 20 21686973 21686973 G A PAX1 Intron 0.35 TCGA-FW-A3TV-06 20 25003716 25003716 C A ACSS1 Nonsense_Mutation p.E274* 0.34 TCGA-FW-A3TV-06 20 31761953 31761953 A C BPIFA2 Missense_Mutation p.N124T 0.26 tolerated(0.39) benign(0.223) TCGA-FW-A3TV-06 20 33874775 33874775 C T FAM83C Missense_Mutation p.A603T 0.29 tolerated_low_confidence(0.07) benign(0.006) TCGA-FW-A3TV-06 20 43850353 43850353 G A SEMG2 Missense_Mutation p.G27E 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 20 44108668 44108668 C T WFDC2 Missense_Mutation p.P104S 0.34 tolerated(0.66) benign(0.013) TCGA-FW-A3TV-06 20 44815549 44815549 G A CDH22 Silent p.I487I 0.33 TCGA-FW-A3TV-06 20 6091022 6091022 T C FERMT1 Silent p.Q223Q 0.30 TCGA-FW-A3TV-06 20 62421280 62421280 C T ZBTB46 Silent p.E277E 0.30 TCGA-FW-A3TV-06 20 9360725 9360725 G A PLCB4 Missense_Mutation p.E257K 0.27 deleterious(0) benign(0.074) TCGA-FW-A3TV-06 20 9459602 9459602 C T PLCB4 Silent p.S1177S 0.28 TCGA-FW-A3TV-06 21 11039158 11039158 G A BAGE2 RNA 0.05 TCGA-FW-A3TV-06 21 28296360 28296360 C T ADAMTS5 3'UTR 0.31 TCGA-FW-A3TV-06 21 33371051 33371051 C T HUNK Missense_Mutation p.R567C 0.23 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-FW-A3TV-06 21 46078189 46078189 C A KRTAP12-3 3'UTR 0.38 TCGA-FW-A3TV-06 22 19035969 19035969 G A DGCR2 Silent p.F330F 0.34 TCGA-FW-A3TV-06 22 20825681 20825681 G A KLHL22 Silent p.L117L 0.23 TCGA-FW-A3TV-06 22 22869140 22869140 G A ZNF280A Missense_Mutation p.P272L 0.32 tolerated(1) benign(0) TCGA-FW-A3TV-06 22 26239706 26239706 C T MYO18B Silent p.S1071S 0.25 TCGA-FW-A3TV-06 22 26688982 26688982 G A SEZ6L Silent p.E235E 0.32 TCGA-FW-A3TV-06 22 26688983 26688983 G A SEZ6L Missense_Mutation p.D236N 0.33 tolerated(0.13) benign(0.347) TCGA-FW-A3TV-06 22 29885256 29885256 G A NEFH Missense_Mutation p.E543K 0.28 tolerated(0.13) unknown(0) TCGA-FW-A3TV-06 22 31285540 31285540 C T OSBP2 Missense_Mutation p.P514S 0.24 deleterious(0.01) possibly_damaging(0.607) TCGA-FW-A3TV-06 22 31285541 31285541 C G OSBP2 Missense_Mutation p.P514R 0.24 deleterious(0) probably_damaging(0.951) TCGA-FW-A3TV-06 22 37271770 37271770 G A NCF4 Missense_Mutation p.D235N 0.28 tolerated(0.06) possibly_damaging(0.831) TCGA-FW-A3TV-06 22 46653007 46653007 G A PKDREJ Silent p.F2071F 0.29 TCGA-FW-A3TV-06 22 46859772 46859772 G A CELSR1 Missense_Mutation p.R1339W 0.32 deleterious(0) probably_damaging(0.991) TCGA-FW-A3TV-06 22 46859773 46859773 G A CELSR1 Silent p.F1338F 0.31 TCGA-FW-A3TV-06 2 103001445 103001445 G A IL18R1 Missense_Mutation p.E266K 0.36 tolerated(0.48) benign(0.016) TCGA-FW-A3TV-06 2 108471066 108471066 G A RGPD4 Missense_Mutation p.E345K 0.27 deleterious(0) possibly_damaging(0.636) TCGA-FW-A3TV-06 2 112751911 112751911 G A MERTK Silent p.R460R 0.28 TCGA-FW-A3TV-06 2 116548736 116548736 C T DPP10 Silent p.I541I 0.12 TCGA-FW-A3TV-06 2 118715983 118715983 G A CCDC93 Silent p.S321S 0.18 TCGA-FW-A3TV-06 2 118715984 118715984 G A CCDC93 Missense_Mutation p.S321F 0.18 deleterious(0) benign(0.234) TCGA-FW-A3TV-06 2 119750046 119750046 G A MARCO Missense_Mutation p.E416K 0.26 deleterious(0.01) unknown(0) TCGA-FW-A3TV-06 2 121744159 121744159 G A GLI2 Silent p.R754R 0.25 TCGA-FW-A3TV-06 2 122227480 122227480 A T CLASP1 Missense_Mutation p.S257T 0.32 tolerated(0.14) benign(0.269) TCGA-FW-A3TV-06 2 125192201 125192201 C T CNTNAP5 Nonsense_Mutation p.Q224* 0.43 TCGA-FW-A3TV-06 2 128046242 128046242 G A ERCC3 Missense_Mutation p.P341S 0.28 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 2 128339518 128339518 G A MYO7B Missense_Mutation p.R378Q 0.35 tolerated(0.06) possibly_damaging(0.892) TCGA-FW-A3TV-06 2 138421116 138421116 A T THSD7B Missense_Mutation p.K1544I 0.50 deleterious(0.01) unknown(0) TCGA-FW-A3TV-06 2 141032134 141032134 G A LRP1B Missense_Mutation p.S4334L 0.22 benign(0.307) TCGA-FW-A3TV-06 2 149247919 149247919 T G MBD5 Missense_Mutation p.F1340C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3TV-06 2 152432772 152432772 A T NEB Missense_Mutation p.F5601I 0.34 benign(0.03) TCGA-FW-A3TV-06 2 159519815 159519815 C G PKP4 Missense_Mutation p.S812W 0.16 deleterious(0) probably_damaging(0.986) TCGA-FW-A3TV-06 2 168105256 168105256 G A XIRP2 Missense_Mutation p.D2452N 0.33 benign(0.014) TCGA-FW-A3TV-06 2 179498590 179498590 T C TTN Silent p.K14212K 0.32 TCGA-FW-A3TV-06 2 179595880 179595880 C T TTN Missense_Mutation p.D5838N 0.30 TCGA-FW-A3TV-06 2 179642743 179642743 G A TTN Intron 0.20 TCGA-FW-A3TV-06 2 201460035 201460035 C T AOX1 Silent p.G48G 0.17 TCGA-FW-A3TV-06 2 210559392 210559392 C T MAP2 Missense_Mutation p.S833L 0.36 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 2 21232149 21232149 C T APOB Missense_Mutation p.E2531K 0.45 possibly_damaging(0.452) TCGA-FW-A3TV-06 2 219029413 219029413 G A CXCR1 Silent p.F174F 0.24 TCGA-FW-A3TV-06 2 220414635 220414635 T A TMEM198 3'UTR 0.30 TCGA-FW-A3TV-06 2 228155544 228155544 G A COL4A3 Missense_Mutation p.G1051E 0.30 unknown(0) TCGA-FW-A3TV-06 2 233272653 233272653 G A ALPPL2 Missense_Mutation p.D192N 0.28 tolerated(0.41) benign(0.007) TCGA-FW-A3TV-06 2 234894470 234894470 C T TRPM8 Missense_Mutation p.T967I 0.38 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 2 25976476 25976476 G A ASXL2 Nonsense_Mutation p.R357* 0.44 TCGA-FW-A3TV-06 2 27803714 27803714 G A C2orf16 Silent p.E1425E 0.50 TCGA-FW-A3TV-06 2 28521300 28521301 - A BRE Frame_Shift_Ins p.N346Kfs*12 0.38 TCGA-FW-A3TV-06 2 32605261 32605261 T A BIRC6 Missense_Mutation p.I183N 0.62 benign(0.17) TCGA-FW-A3TV-06 2 33787817 33787817 G A RASGRP3 3'UTR 0.38 TCGA-FW-A3TV-06 2 3729240 3729240 C T ALLC Silent p.I105I 0.60 TCGA-FW-A3TV-06 2 74043608 74043608 G A C2orf78 Missense_Mutation p.R753Q 0.37 tolerated(0.51) benign(0.003) TCGA-FW-A3TV-06 2 74699807 74699807 G A MRPL53 5'UTR 0.13 TCGA-FW-A3TV-06 2 90060923 90060923 C T IGKV6D-21 Silent p.F90F 0.31 TCGA-FW-A3TV-06 2 99163138 99163138 T C INPP4A Missense_Mutation p.F382L 0.32 tolerated(0.18) benign(0.044) TCGA-FW-A3TV-06 3 118867060 118867060 T C C3orf30 Missense_Mutation p.Y478H 0.25 tolerated(0.55) benign(0.001) TCGA-FW-A3TV-06 3 121303794 121303794 C T ARGFX Missense_Mutation p.S84F 0.32 tolerated(0.07) probably_damaging(0.924) TCGA-FW-A3TV-06 3 121825236 121825236 G A CD86 Missense_Mutation p.D198N 0.33 tolerated(1) benign(0.007) TCGA-FW-A3TV-06 3 12195890 12195890 C T TIMP4 Silent p.E138E 0.14 TCGA-FW-A3TV-06 3 137843393 137843393 C T A4GNT Missense_Mutation p.D246N 0.30 tolerated(0.05) probably_damaging(0.954) TCGA-FW-A3TV-06 3 143185968 143185968 C T SLC9A9 Missense_Mutation p.M460I 0.31 tolerated(0.16) probably_damaging(0.989) TCGA-FW-A3TV-06 3 150421589 150421589 C T FAM194A Missense_Mutation p.E33K 0.23 tolerated_low_confidence(0.2) benign(0.001) TCGA-FW-A3TV-06 3 156729226 156729226 G A LEKR1 Silent p.Q378Q 0.32 TCGA-FW-A3TV-06 3 168834324 168834324 G A MECOM Missense_Mutation p.P323S 0.35 tolerated(0.33) probably_damaging(0.999) TCGA-FW-A3TV-06 3 169540327 169540327 G A LRRIQ4 Silent p.E206E 0.24 TCGA-FW-A3TV-06 3 173997067 173997067 C T NLGN1 Missense_Mutation p.P426S 0.29 deleterious(0.04) benign(0.174) TCGA-FW-A3TV-06 3 18436161 18436161 C T SATB1 Silent p.V333V 0.46 TCGA-FW-A3TV-06 3 18436211 18436211 C T SATB1 Missense_Mutation p.V317I 0.11 deleterious(0) possibly_damaging(0.779) TCGA-FW-A3TV-06 3 193132383 193132383 G A ATP13A4 Missense_Mutation p.S1000F 0.27 deleterious(0.02) benign(0.006) TCGA-FW-A3TV-06 3 37523022 37523022 C G ITGA9 Missense_Mutation p.I156M 0.37 tolerated(0.22) possibly_damaging(0.863) TCGA-FW-A3TV-06 3 38648282 38648282 G A SCN5A Missense_Mutation p.R340W 0.40 tolerated(0.21) possibly_damaging(0.742) TCGA-FW-A3TV-06 3 38739353 38739353 G A SCN10A Silent p.I1786I 0.42 TCGA-FW-A3TV-06 3 38927711 38927711 C T SCN11A Missense_Mutation p.E952K 0.19 tolerated(0.27) benign(0.009) TCGA-FW-A3TV-06 3 46063140 46063140 G A XCR1 Silent p.F100F 0.47 TCGA-FW-A3TV-06 3 48436111 48436111 C T FBXW12 Missense_Mutation p.S461F 0.46 deleterious(0) possibly_damaging(0.846) TCGA-FW-A3TV-06 3 49293770 49293770 C T CCDC36 Silent p.S280S 0.19 TCGA-FW-A3TV-06 3 49293771 49293771 C T CCDC36 Missense_Mutation p.L281F 0.18 tolerated(0.1) benign(0.176) TCGA-FW-A3TV-06 3 49294754 49294754 G A CCDC36 3'UTR 0.10 TCGA-FW-A3TV-06 3 49836761 49836761 C T CDHR4 Silent p.L53L 0.30 TCGA-FW-A3TV-06 3 5246867 5246867 A T EDEM1 Missense_Mutation p.K386N 0.36 tolerated(0.31) benign(0.005) TCGA-FW-A3TV-06 3 52538855 52538855 C T STAB1 Missense_Mutation p.A447V 0.13 deleterious(0.01) benign(0.314) TCGA-FW-A3TV-06 3 58552978 58552978 G A FAM107A Missense_Mutation p.P95L 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A3TV-06 3 62257208 62257208 G A PTPRG Missense_Mutation p.G1054S 0.35 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 3 62257209 62257209 G A PTPRG Missense_Mutation p.G1054D 0.34 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 3 64532455 64532455 C T ADAMTS9 Nonsense_Mutation p.W1681* 0.35 TCGA-FW-A3TV-06 3 98240107 98240107 G A CLDND1 Silent p.F77F 0.23 TCGA-FW-A3TV-06 4 111398043 111398043 G A ENPEP Missense_Mutation p.R158Q 0.28 tolerated(0.53) benign(0.009) TCGA-FW-A3TV-06 4 128811345 128811345 T C PLK4 Missense_Mutation p.V595A 0.37 tolerated(0.23) benign(0.007) TCGA-FW-A3TV-06 4 129924930 129924930 C T SCLT1 Missense_Mutation p.R131K 0.18 tolerated(0.43) benign(0.008) TCGA-FW-A3TV-06 4 167658744 167658744 G A SPOCK3 Missense_Mutation p.P339S 0.31 deleterious(0.02) probably_damaging(1) TCGA-FW-A3TV-06 4 174292590 174292590 G A SAP30 Missense_Mutation p.S86N 0.40 tolerated(0.09) probably_damaging(0.95) TCGA-FW-A3TV-06 4 183673091 183673091 C T TENM3 Silent p.V1256V 0.34 TCGA-FW-A3TV-06 4 189064937 189064937 C T TRIML1 Intron 0.20 TCGA-FW-A3TV-06 4 22749320 22749320 G A GBA3 Missense_Mutation p.E230K 0.32 deleterious(0.02) benign(0.05) TCGA-FW-A3TV-06 4 25678074 25678074 C T SLC34A2 Silent p.F592F 0.32 TCGA-FW-A3TV-06 4 4199274 4199274 G A OTOP1 Silent p.S429S 0.24 TCGA-FW-A3TV-06 4 57180913 57180913 G A KIAA1211 Nonsense_Mutation p.W415* 0.40 TCGA-FW-A3TV-06 4 59442 59442 C T ZNF595 Silent p.V41V 0.04 TCGA-FW-A3TV-06 4 69535692 69535692 C T UGT2B15 Missense_Mutation p.M215I 0.27 tolerated(0.13) benign(0.072) TCGA-FW-A3TV-06 4 70505092 70505092 C G UGT2A2 Missense_Mutation p.K89N 0.28 tolerated(0.06) benign(0.007) TCGA-FW-A3TV-06 4 7811423 7811423 G A AFAP1 Silent p.I324I 0.33 TCGA-FW-A3TV-06 4 8046937 8046937 G A ABLIM2 Missense_Mutation p.S285F 0.28 deleterious(0) possibly_damaging(0.806) TCGA-FW-A3TV-06 4 88766771 88766771 G A MEPE Missense_Mutation p.D251N 0.24 tolerated(0.1) benign(0.211) TCGA-FW-A3TV-06 4 887678 887678 G A GAK Silent p.V287V 0.27 TCGA-FW-A3TV-06 4 9892285 9892285 A G SLC2A9 Silent p.F388F 0.24 TCGA-FW-A3TV-06 5 10461434 10461434 G A ROPN1L Missense_Mutation p.E186K 0.32 tolerated(0.31) benign(0.01) TCGA-FW-A3TV-06 5 1081704 1081704 G A SLC12A7 Missense_Mutation p.P429S 0.24 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 5 1216926 1216926 G A SLC6A19 Missense_Mutation p.G347R 0.32 tolerated(0.12) possibly_damaging(0.509) TCGA-FW-A3TV-06 5 135692374 135692374 G A TRPC7 Silent p.S234S 0.24 TCGA-FW-A3TV-06 5 137419700 137419700 C T WNT8A 5'Flank 0.38 TCGA-FW-A3TV-06 5 13841033 13841033 C T DNAH5 Silent p.R1897R 0.23 TCGA-FW-A3TV-06 5 139193050 139193050 C T PSD2 Silent p.F176F 0.28 TCGA-FW-A3TV-06 5 140202425 140202425 C T PCDHA5 Silent p.F355F 0.37 TCGA-FW-A3TV-06 5 140208718 140208718 C T PCDHA6 Missense_Mutation p.P348S 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FW-A3TV-06 5 140229505 140229505 C T PCDHA9 Silent p.F475F 0.38 TCGA-FW-A3TV-06 5 140235981 140235981 C T PCDHA10 Silent p.F116F 0.36 TCGA-FW-A3TV-06 5 140480892 140480892 C T PCDHB3 Missense_Mutation p.P220L 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-FW-A3TV-06 5 140559284 140559284 G A PCDHB8 Missense_Mutation p.D557N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-FW-A3TV-06 5 140719148 140719148 G A PCDHGA2 Missense_Mutation p.E204K 0.42 tolerated_low_confidence(0.33) benign(0.197) TCGA-FW-A3TV-06 5 140730325 140730325 A C PCDHGB1 Missense_Mutation p.L166F 0.24 tolerated(0.09) benign(0.222) TCGA-FW-A3TV-06 5 140736132 140736132 T A PCDHGA4 Silent p.A455A 0.24 TCGA-FW-A3TV-06 5 141039041 141039041 G A ARAP3 Silent p.I1090I 0.37 TCGA-FW-A3TV-06 5 149576346 149576346 C T SLC6A7 Silent p.L95L 0.28 TCGA-FW-A3TV-06 5 150051338 150051338 G A MYOZ3 Missense_Mutation p.E98K 0.29 tolerated(0.12) benign(0.219) TCGA-FW-A3TV-06 5 150071141 150071141 G A RBM22 3'UTR 0.40 TCGA-FW-A3TV-06 5 150701524 150701524 C T SLC36A2 Intron 0.12 TCGA-FW-A3TV-06 5 153175055 153175055 G A GRIA1 Intron 0.30 TCGA-FW-A3TV-06 5 154395273 154395273 G A KIF4B Silent p.E618E 0.32 TCGA-FW-A3TV-06 5 173376543 173376543 C T CPEB4 Missense_Mutation p.P497S 0.24 tolerated(0.36) benign(0.034) TCGA-FW-A3TV-06 5 175306960 175306960 G A CPLX2 Missense_Mutation p.G106E 0.29 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 5 180338611 180338611 G A BTNL8 Missense_Mutation p.G224R 0.35 tolerated(0.1) benign(0.052) TCGA-FW-A3TV-06 5 35691271 35691271 C T SPEF2 Missense_Mutation p.P553S 0.24 tolerated(0.23) benign(0.007) TCGA-FW-A3TV-06 5 39202662 39202662 C T FYB Missense_Mutation p.G144E 0.37 tolerated(0.14) possibly_damaging(0.907) TCGA-FW-A3TV-06 5 39288923 39288923 C T C9 Missense_Mutation p.G516E 0.24 deleterious(0.02) possibly_damaging(0.761) TCGA-FW-A3TV-06 5 66437954 66437954 G A MAST4 Missense_Mutation p.E836K 0.27 probably_damaging(0.998) TCGA-FW-A3TV-06 5 66481770 66481770 C T CD180 Missense_Mutation p.E56K 0.48 tolerated(0.1) benign(0.009) TCGA-FW-A3TV-06 5 75914174 75914174 A T F2RL2 Missense_Mutation p.F120I 0.30 tolerated(0.24) benign(0.004) TCGA-FW-A3TV-06 5 7900103 7900103 C T MTRR Silent p.L704L 0.31 TCGA-FW-A3TV-06 5 94782360 94782360 G A FAM81B Missense_Mutation p.G330S 0.24 tolerated(0.9) benign(0.01) TCGA-FW-A3TV-06 5 96430361 96430361 A G LIX1 3'UTR 0.50 TCGA-FW-A3TV-06 6 106553230 106553230 C T PRDM1 Missense_Mutation p.P399S 0.37 tolerated(0.7) benign(0.003) TCGA-FW-A3TV-06 6 10931711 10931711 G A SYCP2L Missense_Mutation p.E558K 0.26 tolerated(0.13) benign(0.09) TCGA-FW-A3TV-06 6 116988313 116988313 G A ZUFSP Missense_Mutation p.P15S 0.30 tolerated(0.64) benign(0.002) TCGA-FW-A3TV-06 6 119345489 119345489 C T FAM184A Missense_Mutation p.E217K 0.17 deleterious(0.03) benign(0.182) TCGA-FW-A3TV-06 6 135517065 135517065 C T MYB Silent p.I376I 0.27 TCGA-FW-A3TV-06 6 13642770 13642770 A C RANBP9 Missense_Mutation p.F389C 0.30 deleterious(0) probably_damaging(0.997) TCGA-FW-A3TV-06 6 152831380 152831380 G A SYNE1 Nonsense_Mutation p.Q177* 0.22 TCGA-FW-A3TV-06 6 163235304 163235304 C T PACRG Silent p.I94I 0.37 TCGA-FW-A3TV-06 6 25826765 25826765 A G SLC17A1 Missense_Mutation p.M44T 0.34 deleterious(0) possibly_damaging(0.902) TCGA-FW-A3TV-06 6 26444527 26444527 T C BTN3A3 Missense_Mutation p.V143A 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-FW-A3TV-06 6 29364949 29364949 C T OR12D2 Missense_Mutation p.S158F 0.39 deleterious(0) benign(0.32) TCGA-FW-A3TV-06 6 29364950 29364950 C T OR12D2 Silent p.S158S 0.39 TCGA-FW-A3TV-06 6 2948416 2948416 G A SERPINB6 3'UTR 0.21 TCGA-FW-A3TV-06 6 30920134 30920134 C T DPCR1 Missense_Mutation p.P1298L 0.27 deleterious(0.01) possibly_damaging(0.7) TCGA-FW-A3TV-06 6 33608316 33608316 C T ITPR3 Missense_Mutation p.P49S 0.24 deleterious(0) probably_damaging(0.952) TCGA-FW-A3TV-06 6 35965594 35965594 G A SLC26A8 Missense_Mutation p.S183L 0.33 deleterious(0) possibly_damaging(0.509) TCGA-FW-A3TV-06 6 43096872 43096872 C T PTK7 Silent p.F87F 0.42 TCGA-FW-A3TV-06 6 43405718 43405718 C T ABCC10 Missense_Mutation p.S641F 0.40 deleterious(0) possibly_damaging(0.882) TCGA-FW-A3TV-06 6 49578828 49578828 C T RHAG Missense_Mutation p.D326N 0.31 deleterious(0) probably_damaging(0.994) TCGA-FW-A3TV-06 6 49753675 49753675 G A PGK2 Missense_Mutation p.P409L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 6 54806762 54806762 G A FAM83B Missense_Mutation p.G998E 0.29 tolerated(0.09) probably_damaging(0.948) TCGA-FW-A3TV-06 6 70778357 70778357 G A COL19A1 Missense_Mutation p.E405K 0.28 tolerated(0.16) unknown(0) TCGA-FW-A3TV-06 6 75853081 75853081 G A COL12A1 Silent p.L1572L 0.29 TCGA-FW-A3TV-06 6 80196841 80196841 G A LCA5 Silent p.F658F 0.25 TCGA-FW-A3TV-06 6 88173915 88173915 G A C6ORF165 Missense_Mutation p.E606K 0.27 tolerated(1) benign(0) TCGA-FW-A3TV-06 6 90438745 90438745 C T MDN1 Missense_Mutation p.E1752K 0.32 probably_damaging(1) TCGA-FW-A3TV-06 6 90438746 90438746 C T MDN1 Silent p.L1751L 0.31 TCGA-FW-A3TV-06 7 117199595 117199595 C T CFTR Silent p.F490F 0.22 TCGA-FW-A3TV-06 7 123296057 123296057 G A LMOD2 Missense_Mutation p.E14K 0.54 deleterious(0) probably_damaging(0.998) TCGA-FW-A3TV-06 7 128490051 128490051 G A FLNC Missense_Mutation p.E1741K 0.23 tolerated(0.92) benign(0.004) TCGA-FW-A3TV-06 7 128850261 128850261 G A SMO Silent p.E508E 0.28 TCGA-FW-A3TV-06 7 132192424 132192424 C T PLXNA4 Silent p.Q343Q 0.35 TCGA-FW-A3TV-06 7 134896291 134896291 G A WDR91 5'Flank 0.37 TCGA-FW-A3TV-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-FW-A3TV-06 7 142045530 142045530 G A TRBV4-2 Missense_Mutation p.E20K 0.20 deleterious(0.01) benign(0.281) TCGA-FW-A3TV-06 7 142655480 142655480 C T KEL Missense_Mutation p.E146K 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-FW-A3TV-06 7 1594938 1594938 G A TMEM184A Silent p.I61I 0.21 TCGA-FW-A3TV-06 7 23775375 23775375 G A STK31 Silent p.R234R 0.34 TCGA-FW-A3TV-06 7 26225463 26225463 G A NFE2L3 3'UTR 0.42 TCGA-FW-A3TV-06 7 30793497 30793497 C T INMT Missense_Mutation p.P102L 0.27 deleterious(0.01) benign(0.361) TCGA-FW-A3TV-06 7 48089491 48089491 C T C7orf57 Silent p.A174A 0.35 TCGA-FW-A3TV-06 7 50737506 50737506 G A GRB10 Silent p.P139P 0.28 TCGA-FW-A3TV-06 7 5569226 5569226 G A ACTB Silent p.F21F 0.28 TCGA-FW-A3TV-06 7 56007351 56007351 C T ZNF713 Silent p.S315S 0.34 TCGA-FW-A3TV-06 7 57188088 57188088 C T ZNF479 Missense_Mutation p.R345K 0.11 tolerated(0.3) benign(0.101) TCGA-FW-A3TV-06 7 57529513 57529513 C T ZNF716 Missense_Mutation p.S449L 0.43 deleterious(0.02) benign(0.082) TCGA-FW-A3TV-06 7 5923527 5923527 C T OCM Silent p.F67F 0.30 TCGA-FW-A3TV-06 7 6048912 6048912 G A AIMP2 5'UTR 0.33 TCGA-FW-A3TV-06 7 73460543 73460543 C T ELN Silent p.I189I 0.30 TCGA-FW-A3TV-06 7 75140347 75140347 G A Y_RNA 3'Flank 0.29 TCGA-FW-A3TV-06 7 98460854 98460854 C T TMEM130 Missense_Mutation p.M85I 0.29 tolerated(0.25) benign(0.001) TCGA-FW-A3TV-06 8 100832313 100832313 T C VPS13B Missense_Mutation p.V3011A 0.43 deleterious(0) benign(0.002) TCGA-FW-A3TV-06 8 110448605 110448605 G A PKHD1L1 Missense_Mutation p.E1182K 0.27 tolerated(0.17) benign(0.009) TCGA-FW-A3TV-06 8 121457546 121457546 G A MRPL13 5'UTR 0.26 TCGA-FW-A3TV-06 8 124664134 124664134 C T KLHL38 Missense_Mutation p.G345R 0.48 tolerated(0.1) benign(0.097) TCGA-FW-A3TV-06 8 3565983 3565983 C T CSMD1 Missense_Mutation p.G321E 0.34 probably_damaging(0.999) TCGA-FW-A3TV-06 8 36776350 36776350 C T KCNU1 Missense_Mutation p.P844L 0.28 deleterious(0.03) benign(0.001) TCGA-FW-A3TV-06 8 37730652 37730652 G A RAB11FIP1 Silent p.S556S 0.36 TCGA-FW-A3TV-06 8 38275492 38275492 G A FGFR1 Missense_Mutation p.P514L 0.28 deleterious(0) possibly_damaging(0.585) TCGA-FW-A3TV-06 8 41399552 41399552 C T GINS4 Silent p.I206I 0.26 TCGA-FW-A3TV-06 8 41551602 41551602 C T ANK1 Missense_Mutation p.E1157K 0.43 deleterious(0) benign(0.341) TCGA-FW-A3TV-06 8 48769852 48769852 G A PRKDC Silent p.R2157R 0.32 TCGA-FW-A3TV-06 8 48805808 48805808 G A PRKDC Missense_Mutation p.P1246S 0.17 benign(0.198) TCGA-FW-A3TV-06 8 665915 665915 G A ERICH1 Missense_Mutation p.P39S 0.33 tolerated(0.25) possibly_damaging(0.765) TCGA-FW-A3TV-06 8 6728134 6728134 C T DEFB1 3'UTR 0.31 TCGA-FW-A3TV-06 8 95186166 95186166 C T CDH17 Silent p.K214K 0.40 TCGA-FW-A3TV-06 9 107331678 107331678 C T OR13C8 Missense_Mutation p.S77F 0.44 tolerated(0.36) possibly_damaging(0.836) TCGA-FW-A3TV-06 9 123812483 123812483 C T C5 Silent p.G14G 0.07 TCGA-FW-A3TV-06 9 124533000 124533000 C T DAB2IP Missense_Mutation p.S664F 0.43 deleterious(0.01) possibly_damaging(0.555) TCGA-FW-A3TV-06 9 124533001 124533001 C T DAB2IP Silent p.S664S 0.43 TCGA-FW-A3TV-06 9 125562841 125562841 G A OR1K1 Missense_Mutation p.G147E 0.12 deleterious(0.01) benign(0.125) TCGA-FW-A3TV-06 9 135073874 135073874 G A NTNG2 Silent p.E245E 0.07 TCGA-FW-A3TV-06 9 135797353 135797353 C T TSC1 Silent p.V172V 0.37 TCGA-FW-A3TV-06 9 138439057 138439057 G A OBP2A Silent p.L80L 0.31 TCGA-FW-A3TV-06 9 139299544 139299544 G A SDCCAG3 Missense_Mutation p.T335I 0.09 deleterious(0) probably_damaging(0.935) TCGA-FW-A3TV-06 9 18928949 18928949 C T FAM154A Missense_Mutation p.D176N 0.47 deleterious(0) probably_damaging(0.986) TCGA-FW-A3TV-06 9 21166195 21166195 G A IFNA21 Silent p.S139S 0.48 TCGA-FW-A3TV-06 9 21440668 21440668 G A IFNA1 Missense_Mutation p.M54I 0.39 deleterious(0) benign(0.007) TCGA-FW-A3TV-06 9 40773305 40773305 G A ZNF658 Missense_Mutation p.P657L 0.40 deleterious(0) probably_damaging(0.999) TCGA-FW-A3TV-06 9 4118105 4118105 G A GLIS3 Missense_Mutation p.P458L 0.31 tolerated(0.32) probably_damaging(0.999) TCGA-FW-A3TV-06 9 77282817 77282817 G A RORB Missense_Mutation p.D371N 0.07 tolerated(0.2) benign(0.031) TCGA-FW-A3TV-06 9 87549127 87549127 G A NTRK2 Missense_Mutation p.E562K 0.41 deleterious(0) benign(0.337) TCGA-FW-A3TV-06 9 91617254 91617254 C T S1PR3 3'UTR 0.32 TCGA-FW-A3TV-06 X 101911016 101911016 G A GPRASP1 Nonsense_Mutation p.W725* 0.33 TCGA-FW-A3TV-06 X 110654119 110654119 G A DCX Silent p.S28S 0.32 TCGA-FW-A3TV-06 X 110654120 110654120 G A DCX Missense_Mutation p.S28F 0.33 deleterious_low_confidence(0) unknown(0) TCGA-FW-A3TV-06 X 117744304 117744304 C T DOCK11 Missense_Mutation p.P1007S 0.23 tolerated(0.07) probably_damaging(0.974) TCGA-FW-A3TV-06 X 130215792 130215792 G A ARHGAP36 Silent p.S51S 0.26 TCGA-FW-A3TV-06 X 133922779 133922779 G A FAM122B Missense_Mutation p.P139L 0.43 deleterious(0.04) probably_damaging(1) TCGA-FW-A3TV-06 X 13587946 13587946 G A EGFL6 5'UTR 0.42 TCGA-FW-A3TV-06 X 138644105 138644105 G A F9 Missense_Mutation p.G421R 0.29 deleterious(0.01) probably_damaging(0.949) TCGA-FW-A3TV-06 X 139866313 139866313 C T CDR1 Missense_Mutation p.M73I 0.33 tolerated(0.27) benign(0.043) TCGA-FW-A3TV-06 X 140969392 140969392 C T MAGEC3 Missense_Mutation p.S240F 0.34 deleterious(0) possibly_damaging(0.788) TCGA-FW-A3TV-06 X 140994252 140994252 C T MAGEC1 Silent p.F354F 0.33 TCGA-FW-A3TV-06 X 151303864 151303864 C T MAGEA10 Missense_Mutation p.D77N 0.32 tolerated(0.34) possibly_damaging(0.449) TCGA-FW-A3TV-06 X 153223312 153223312 G A HCFC1 Missense_Mutation p.S685L 0.26 deleterious(0) probably_damaging(0.974) TCGA-FW-A3TV-06 X 153296195 153296195 G A MECP2 Missense_Mutation p.P374S 0.40 deleterious(0.03) unknown(0) TCGA-FW-A3TV-06 X 3229096 3229096 G A MXRA5 Missense_Mutation p.P2383L 0.44 deleterious(0) probably_damaging(1) TCGA-FW-A3TV-06 X 34149821 34149821 G A FAM47A Missense_Mutation p.P192L 0.38 tolerated(0.06) probably_damaging(0.991) TCGA-FW-A3TV-06 X 47918590 47918590 C T ZNF630 Missense_Mutation p.R414Q 0.42 tolerated(0.77) benign(0.006) TCGA-FW-A3TV-06 X 50121162 50121162 C T DGKK RNA 0.26 TCGA-FW-A3TV-06 X 54481899 54481899 G A FGD1 Missense_Mutation p.S666F 0.11 deleterious(0) possibly_damaging(0.879) TCGA-FW-A3TV-06 X 57405110 57405110 C T FAAH2 Missense_Mutation p.P257S 0.07 deleterious(0) probably_damaging(0.995) TCGA-FW-A3TV-06 X 64722946 64722946 G A ZC3H12B Missense_Mutation p.E790K 0.29 deleterious(0.01) possibly_damaging(0.708) TCGA-FW-A3TV-06 X 68725707 68725707 C T FAM155B Silent p.F194F 0.30 TCGA-FW-A3TV-06 X 73524129 73524129 G A ZCCHC13 Missense_Mutation p.G10R 0.35 tolerated(0.06) probably_damaging(0.91) TCGA-FW-A3TV-06 X 76225910 76225910 G A MIR325 RNA 0.32 TCGA-FW-A3TV-06 X 83128910 83128910 G T CYLC1 Missense_Mutation p.K398N 0.39 tolerated(0.06) unknown(0) TCGA-FW-A3TV-06 X 83402013 83402013 G A RPS6KA6 Missense_Mutation p.H132Y 0.31 deleterious(0) probably_damaging(0.961) TCGA-FW-A5DX-01 10 102027414 102027414 G A CWF19L1 5'UTR 0.91 TCGA-FW-A5DX-01 10 105807901 105807901 A G COL17A1 Intron 0.94 TCGA-FW-A5DX-01 10 114158660 114158660 G A ACSL5 Missense_Mutation p.G109E 0.92 deleterious(0.03) benign(0.207) TCGA-FW-A5DX-01 10 50530807 50530807 G T C10orf71 Missense_Mutation p.G73C 0.68 deleterious(0) possibly_damaging(0.478) TCGA-FW-A5DX-01 10 73269904 73269904 G A CDH23-AS1 Intron 0.85 TCGA-FW-A5DX-01 10 73269905 73269905 G A CDH23-AS1 Intron 0.87 TCGA-FW-A5DX-01 10 75562316 75562316 C T NDST2 Missense_Mutation p.D849N 0.93 tolerated(0.51) benign(0.013) TCGA-FW-A5DX-01 10 75562317 75562317 C T NDST2 Silent p.T848T 0.93 TCGA-FW-A5DX-01 11 102661500 102661500 G A MMP1 Missense_Mutation p.P412S 0.88 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 11 114453658 114453658 G A NXPE4 Missense_Mutation p.S61L 0.22 tolerated(0.12) benign(0.001) TCGA-FW-A5DX-01 11 118344861 118344861 C T KMT2A Missense_Mutation p.S996F 0.98 possibly_damaging(0.541) TCGA-FW-A5DX-01 11 124757664 124757664 C T ROBO4 Missense_Mutation p.G674E 0.94 deleterious(0.01) probably_damaging(0.962) TCGA-FW-A5DX-01 11 5068609 5068609 C T OR52J3 Missense_Mutation p.P285L 0.91 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 11 5529439 5529439 A C UBQLN3 Missense_Mutation p.D450E 0.97 tolerated(0.44) benign(0.003) TCGA-FW-A5DX-01 11 56086328 56086328 C T OR8K3 Silent p.L182L 0.81 TCGA-FW-A5DX-01 11 801464 801464 G A PIDD Missense_Mutation p.P488L 1.00 deleterious(0.01) probably_damaging(0.986) TCGA-FW-A5DX-01 12 11034877 11034877 C T PRH1 Missense_Mutation p.G153E 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A5DX-01 12 11083618 11083618 G A PRH2 Missense_Mutation p.G153E 0.64 tolerated_low_confidence(0.07) unknown(0) TCGA-FW-A5DX-01 12 117383244 117383244 C T FBXW8 Missense_Mutation p.P167S 0.98 tolerated(0.36) benign(0.006) TCGA-FW-A5DX-01 12 122674711 122674711 G A LRRC43 Missense_Mutation p.D233N 0.91 tolerated(0.87) benign(0.145) TCGA-FW-A5DX-01 12 12300330 12300330 G T LRP6 Missense_Mutation p.L1123I 0.48 deleterious(0.01) possibly_damaging(0.843) TCGA-FW-A5DX-01 12 52579308 52579308 C T KRT80 Missense_Mutation p.D122N 0.94 tolerated(0.27) benign(0.121) TCGA-FW-A5DX-01 12 54674534 54674534 T C HNRNPA1 5'Flank 0.95 TCGA-FW-A5DX-01 12 58007258 58007258 G A ARHGEF25 Silent p.E187E 0.93 TCGA-FW-A5DX-01 12 71978208 71978208 G A LGR5 Silent p.L806L 0.91 TCGA-FW-A5DX-01 12 82070612 82070612 G A PPFIA2 Silent p.S87S 0.88 TCGA-FW-A5DX-01 12 91347528 91347528 C T CCER1 Missense_Mutation p.G331E 0.92 tolerated(1) unknown(0) TCGA-FW-A5DX-01 13 101944592 101944592 G A NALCN Missense_Mutation p.L309F 0.31 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DX-01 13 101944593 101944593 G A NALCN Silent p.F308F 0.30 TCGA-FW-A5DX-01 13 102250644 102250644 G A ITGBL1 Missense_Mutation p.G337E 0.25 deleterious(0) probably_damaging(0.991) TCGA-FW-A5DX-01 13 103498695 103498695 C T ERCC5 Silent p.L27L 0.13 TCGA-FW-A5DX-01 13 25058824 25058824 A G PARP4 Missense_Mutation p.L472P 0.21 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 13 25433264 25433264 C T RNF17 Missense_Mutation p.R1246C 0.23 deleterious(0) probably_damaging(0.993) TCGA-FW-A5DX-01 13 38357408 38357408 C A TRPC4 Missense_Mutation p.R21S 0.27 deleterious(0.02) possibly_damaging(0.757) TCGA-FW-A5DX-01 13 38357409 38357409 C T TRPC4 Missense_Mutation p.R21K 0.27 tolerated(0.06) possibly_damaging(0.591) TCGA-FW-A5DX-01 13 39435628 39435628 G A FREM2 Missense_Mutation p.R2527H 0.22 tolerated(0.07) benign(0.028) TCGA-FW-A5DX-01 13 48919328 48919329 - TGGA RB1 Frame_Shift_Ins p.E166Dfs*6 0.79 TCGA-FW-A5DX-01 13 53049305 53049305 G T CKAP2 3'UTR 0.21 TCGA-FW-A5DX-01 13 79212996 79212996 A T RNF219 Missense_Mutation p.Y171N 0.29 tolerated(0.23) probably_damaging(0.94) TCGA-FW-A5DX-01 13 79940872 79940872 G A RBM26 Missense_Mutation p.P344L 0.28 tolerated(0.33) probably_damaging(0.961) TCGA-FW-A5DX-01 14 101510585 101510585 G A MIR1185-2 RNA 0.23 TCGA-FW-A5DX-01 14 105416564 105416564 G A AHNAK2 Missense_Mutation p.P1742S 0.30 probably_damaging(0.996) TCGA-FW-A5DX-01 14 106208495 106208495 C T IGHG1 Missense_Mutation p.M135I 0.30 tolerated(0.15) benign(0.046) TCGA-FW-A5DX-01 14 20345224 20345224 C T OR4K2 Silent p.L266L 0.24 TCGA-FW-A5DX-01 14 20404411 20404411 G A OR4K1 Missense_Mutation p.E196K 0.23 deleterious(0.04) possibly_damaging(0.626) TCGA-FW-A5DX-01 14 20502305 20502305 G A OR4K13 Missense_Mutation p.L205F 0.44 tolerated(0.14) benign(0.443) TCGA-FW-A5DX-01 14 24114529 24114529 C T DHRS2 3'UTR 0.29 TCGA-FW-A5DX-01 14 63174717 63174717 C T KCNH5 Missense_Mutation p.E826K 0.35 tolerated_low_confidence(0.15) benign(0.126) TCGA-FW-A5DX-01 14 68162457 68162457 C T RDH11 5'UTR 0.50 TCGA-FW-A5DX-01 14 73721582 73721582 C T PAPLN Intron 0.69 TCGA-FW-A5DX-01 14 74364841 74364841 C T ZNF410 Silent p.F169F 0.35 TCGA-FW-A5DX-01 14 74973431 74973431 C T LTBP2 Missense_Mutation p.E1335K 0.26 tolerated(0.19) benign(0.027) TCGA-FW-A5DX-01 14 77272799 77272799 C T ANGEL1 Missense_Mutation p.R447K 0.39 tolerated(0.26) benign(0.38) TCGA-FW-A5DX-01 14 81251256 81251256 G A CEP128 Missense_Mutation p.H732Y 0.29 deleterious(0) probably_damaging(0.982) TCGA-FW-A5DX-01 14 93119107 93119107 C T RIN3 Silent p.P571P 0.26 TCGA-FW-A5DX-01 14 94741786 94741786 C T PPP4R4 Missense_Mutation p.S842F 0.29 tolerated_low_confidence(0.09) probably_damaging(0.929) TCGA-FW-A5DX-01 14 94772502 94772502 C T SERPINA6 Missense_Mutation p.G313E 0.62 tolerated(0.99) benign(0.169) TCGA-FW-A5DX-01 15 101597174 101597174 G A LRRK1 Silent p.P1482P 0.16 TCGA-FW-A5DX-01 15 25417693 25417693 C T SNORD115-3 5'Flank 0.56 TCGA-FW-A5DX-01 15 29561213 29561213 G A NDNL2 Silent p.L233L 0.55 TCGA-FW-A5DX-01 15 29561214 29561214 G A NDNL2 Silent p.Y232Y 0.54 TCGA-FW-A5DX-01 15 31234080 31234080 C T MTMR10 Missense_Mutation p.G643S 0.44 deleterious(0.02) possibly_damaging(0.609) TCGA-FW-A5DX-01 15 38988833 38988833 G A C15orf53 Missense_Mutation p.D9N 0.41 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FW-A5DX-01 15 44890925 44890925 G A SPG11 Missense_Mutation p.L1266F 0.36 deleterious(0) probably_damaging(0.934) TCGA-FW-A5DX-01 15 50264896 50264896 T A ATP8B4 Missense_Mutation p.T376S 0.65 tolerated(0.2) probably_damaging(0.993) TCGA-FW-A5DX-01 15 50489786 50489786 G A SLC27A2 Missense_Mutation p.G190R 0.62 deleterious(0.03) probably_damaging(0.986) TCGA-FW-A5DX-01 15 54825248 54825248 G A UNC13C Missense_Mutation p.D1894N 0.65 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-FW-A5DX-01 15 57809031 57809031 G A CGNL1 Silent p.G819G 0.54 TCGA-FW-A5DX-01 15 59225614 59225614 G A SLTM Nonsense_Mutation p.R51* 0.26 TCGA-FW-A5DX-01 15 59225615 59225615 G A SLTM Silent p.S50S 0.26 TCGA-FW-A5DX-01 15 71193335 71193335 C T LRRC49 Missense_Mutation p.L95F 0.39 tolerated(0.18) possibly_damaging(0.614) TCGA-FW-A5DX-01 15 74836781 74836781 C T ARID3B Silent p.V168V 0.20 TCGA-FW-A5DX-01 15 78841258 78841258 A G PSMA4 Missense_Mutation p.E253G 0.25 deleterious(0.04) unknown(0) TCGA-FW-A5DX-01 15 93499706 93499706 T C CHD2 Silent p.I609I 0.39 TCGA-FW-A5DX-01 16 15978036 15978036 C T FOPNL Missense_Mutation p.G19R 0.82 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 16 15978037 15978037 C T FOPNL Silent p.K18K 0.82 TCGA-FW-A5DX-01 16 1816956 1816956 C T MAPK8IP3 Silent p.I1023I 0.95 TCGA-FW-A5DX-01 16 1841005 1841005 C T IGFALS Missense_Mutation p.E510K 0.94 tolerated(0.85) benign(0.063) TCGA-FW-A5DX-01 16 19474666 19474666 C T TMC5 Nonsense_Mutation p.Q405* 0.95 TCGA-FW-A5DX-01 16 21069510 21069510 C T DNAH3 Missense_Mutation p.R1274Q 0.94 deleterious(0) probably_damaging(0.995) TCGA-FW-A5DX-01 16 21078629 21078629 C T DNAH3 Missense_Mutation p.E1165K 0.92 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DX-01 16 24826599 24826599 G A TNRC6A Missense_Mutation p.G1602S 0.97 tolerated(0.11) benign(0.147) TCGA-FW-A5DX-01 16 24826600 24826600 G A TNRC6A Missense_Mutation p.G1602D 0.97 tolerated(0.2) possibly_damaging(0.804) TCGA-FW-A5DX-01 16 30500666 30500666 G A ITGAL Missense_Mutation p.G391E 0.94 deleterious(0.01) benign(0.269) TCGA-FW-A5DX-01 16 30500667 30500667 G A ITGAL Silent p.G391G 0.94 TCGA-FW-A5DX-01 16 30749952 30749952 C T SRCAP Missense_Mutation p.P2864L 0.98 unknown(0) TCGA-FW-A5DX-01 16 30978850 30978850 C T SETD1A Missense_Mutation p.S904F 0.89 possibly_damaging(0.831) TCGA-FW-A5DX-01 16 3452367 3452367 G A ZNF174 Silent p.V121V 0.44 TCGA-FW-A5DX-01 16 3452368 3452368 G A ZNF174 Missense_Mutation p.E122K 0.45 deleterious(0) probably_damaging(0.997) TCGA-FW-A5DX-01 16 3613800 3613800 C T NLRC3 Missense_Mutation p.G427S 0.44 tolerated(0.07) benign(0.006) TCGA-FW-A5DX-01 16 48244916 48244916 C T ABCC11 Silent p.E517E 0.87 TCGA-FW-A5DX-01 16 57003346 57003346 G A CETP Silent p.V94V 0.92 TCGA-FW-A5DX-01 16 57054642 57054642 C T NLRC5 Silent p.L6L 0.88 TCGA-FW-A5DX-01 16 57054643 57054643 C T NLRC5 Nonsense_Mutation p.Q7* 0.88 TCGA-FW-A5DX-01 16 57957188 57957188 C T CNGB1 Silent p.P544P 0.90 TCGA-FW-A5DX-01 17 21217491 21217491 G A MAP2K3 Silent p.K331K 0.36 TCGA-FW-A5DX-01 17 37682121 37682121 T C CDK12 Silent p.L1104L 0.98 TCGA-FW-A5DX-01 17 41020498 41020498 G A AOC4P RNA 0.96 TCGA-FW-A5DX-01 17 6930954 6930954 G A BCL6B 3'UTR 0.93 TCGA-FW-A5DX-01 18 10471920 10471920 C T APCDD1 Silent p.I212I 0.56 TCGA-FW-A5DX-01 18 10471921 10471921 C T APCDD1 Missense_Mutation p.R213W 0.56 deleterious(0) probably_damaging(0.996) TCGA-FW-A5DX-01 18 33718315 33718315 C T ELP2 Missense_Mutation p.P124L 0.62 tolerated(0.32) benign(0.016) TCGA-FW-A5DX-01 18 34310700 34310700 C T FHOD3 Missense_Mutation p.P995L 0.51 deleterious(0) probably_damaging(0.92) TCGA-FW-A5DX-01 18 61305285 61305285 C T SERPINB4 Missense_Mutation p.D281N 0.55 tolerated(0.54) benign(0.043) TCGA-FW-A5DX-01 18 7026079 7026079 G A LAMA1 Silent p.V767V 0.69 TCGA-FW-A5DX-01 19 12061283 12061283 C T ZNF700 3'UTR 0.53 TCGA-FW-A5DX-01 19 12920946 12920946 C T RNASEH2A Missense_Mutation p.P158L 0.65 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DX-01 19 19749133 19749133 C T GMIP Silent p.E208E 0.61 TCGA-FW-A5DX-01 19 32954292 32954292 C T DPY19L3 Missense_Mutation p.S448F 0.50 tolerated(0.1) benign(0.012) TCGA-FW-A5DX-01 19 375960 375960 C T THEG Missense_Mutation p.S4N 0.25 tolerated(0.38) benign(0.001) TCGA-FW-A5DX-01 19 41931804 41931804 C T B3GNT8 Missense_Mutation p.E294K 0.25 tolerated(0.9) benign(0.001) TCGA-FW-A5DX-01 19 4359207 4359213 CCAGGAA - MPND Frame_Shift_Del p.Q429Pfs*? 0.13 TCGA-FW-A5DX-01 19 44740025 44740025 T A ZNF227 Missense_Mutation p.I481N 0.58 tolerated(0.12) probably_damaging(0.999) TCGA-FW-A5DX-01 19 50303397 50303397 C T AP2A1 Missense_Mutation p.T482I 0.47 deleterious(0.04) possibly_damaging(0.778) TCGA-FW-A5DX-01 19 50453359 50453359 C T SIGLEC11 Nonsense_Mutation p.W655* 0.50 TCGA-FW-A5DX-01 19 56297152 56297152 C T NLRP11 Missense_Mutation p.E981K 0.22 deleterious(0.05) benign(0.031) TCGA-FW-A5DX-01 19 57883188 57883188 C T ZNF547 Silent p.S21S 0.57 TCGA-FW-A5DX-01 19 7805732 7805732 C T CD209 3'UTR 0.62 TCGA-FW-A5DX-01 19 7975228 7975228 C T MAP2K7 Silent p.F139F 0.67 TCGA-FW-A5DX-01 19 9407126 9407126 A G ZNF699 Silent p.C318C 0.40 TCGA-FW-A5DX-01 1 104233978 104233978 G A AMY1B Missense_Mutation p.P347S 0.30 deleterious(0.03) probably_damaging(1) TCGA-FW-A5DX-01 1 109369912 109369912 C T AKNAD1 Silent p.V617V 0.80 TCGA-FW-A5DX-01 1 114508861 114508861 C T HIPK1 Missense_Mutation p.A783V 0.06 tolerated(0.05) benign(0.044) TCGA-FW-A5DX-01 1 114508862 114508862 C T HIPK1 Silent p.A783A 0.07 TCGA-FW-A5DX-01 1 12919635 12919635 C T PRAMEF2 Silent p.F125F 0.59 TCGA-FW-A5DX-01 1 154033433 154033433 G A NUP210L Silent p.N911N 0.81 TCGA-FW-A5DX-01 1 160122998 160122998 C T ATP1A4 Missense_Mutation p.S64F 0.80 deleterious(0) benign(0.203) TCGA-FW-A5DX-01 1 163117069 163117069 G A RGS5 3'UTR 0.17 TCGA-FW-A5DX-01 1 190068053 190068053 C T BRINP3 Missense_Mutation p.G466S 0.81 deleterious(0.02) benign(0.158) TCGA-FW-A5DX-01 1 196928133 196928133 C T CFHR2 Missense_Mutation p.H246Y 0.11 tolerated(0.15) benign(0.046) TCGA-FW-A5DX-01 1 20304910 20304910 C T PLA2G2A Missense_Mutation p.V50M 0.72 tolerated(0.11) benign(0.128) TCGA-FW-A5DX-01 1 204985602 204985602 G A NFASC Missense_Mutation p.E1220K 0.12 tolerated(0.16) unknown(0) TCGA-FW-A5DX-01 1 206241635 206241635 C G C1orf186 Missense_Mutation p.V52L 0.25 tolerated(0.1) benign(0.083) TCGA-FW-A5DX-01 1 207110953 207110953 C T PIGR Missense_Mutation p.D178N 0.82 tolerated(0.19) benign(0.281) TCGA-FW-A5DX-01 1 207791445 207791445 G C CR1 Missense_Mutation p.G2307R 0.86 deleterious(0) probably_damaging(0.988) TCGA-FW-A5DX-01 1 209879168 209879168 G A HSD11B1 Missense_Mutation p.G34E 0.13 deleterious(0) probably_damaging(0.95) TCGA-FW-A5DX-01 1 226549185 226549185 G A PARP1 Silent p.F1007F 0.82 TCGA-FW-A5DX-01 1 226576422 226576422 C T PARP1 Missense_Mutation p.E218K 0.09 tolerated(0.82) benign(0.002) TCGA-FW-A5DX-01 1 235715197 235715197 C T GNG4 3'UTR 0.59 TCGA-FW-A5DX-01 1 2538422 2538422 C T MMEL1 Missense_Mutation p.E208K 0.13 tolerated(0.47) benign(0.009) TCGA-FW-A5DX-01 1 26620817 26620817 G A UBXN11 Silent p.F146F 0.67 TCGA-FW-A5DX-01 1 33354560 33354560 G A HPCA Missense_Mutation p.E21K 0.83 tolerated(0.92) benign(0.003) TCGA-FW-A5DX-01 1 3647493 3647493 C G TP73 Missense_Mutation p.P450A 0.72 tolerated(0.25) benign(0.002) TCGA-FW-A5DX-01 1 3647494 3647494 C G TP73 Missense_Mutation p.P450R 0.72 tolerated(0.05) benign(0.138) TCGA-FW-A5DX-01 1 3647495 3647495 C T TP73 Silent p.P450P 0.72 TCGA-FW-A5DX-01 1 43212523 43212523 C T LEPRE1 3'UTR 0.10 TCGA-FW-A5DX-01 1 62455986 62455986 G A INADL Missense_Mutation p.G1273R 0.80 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 1 74835098 74835098 C T FPGT-TNNI3K Missense_Mutation p.S613F 0.82 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DX-01 1 7700520 7700520 C T CAMTA1 Missense_Mutation p.P191S 0.08 tolerated(0.1) possibly_damaging(0.546) TCGA-FW-A5DX-01 20 24524205 24524205 G A SYNDIG1 Missense_Mutation p.E158K 0.25 deleterious(0.03) possibly_damaging(0.556) TCGA-FW-A5DX-01 20 33501951 33501951 G A ACSS2 Silent p.E232E 0.68 TCGA-FW-A5DX-01 20 37547383 37547383 G T PPP1R16B 3'UTR 0.64 TCGA-FW-A5DX-01 20 40054016 40054016 G T CHD6 Missense_Mutation p.P1383Q 0.59 tolerated(0.25) benign(0.008) TCGA-FW-A5DX-01 20 54824268 54824268 G A MC3R Missense_Mutation p.M123I 0.35 deleterious(0.04) benign(0.292) TCGA-FW-A5DX-01 20 62038002 62038002 T C KCNQ2 Missense_Mutation p.K872E 0.47 deleterious_low_confidence(0) benign(0.209) TCGA-FW-A5DX-01 20 6750995 6750995 G A BMP2 Silent p.V74V 0.58 TCGA-FW-A5DX-01 21 11021151 11021151 C T BAGE2 RNA 0.10 TCGA-FW-A5DX-01 21 11038789 11038789 C T BAGE2 RNA 0.07 TCGA-FW-A5DX-01 21 45502766 45502766 C T TRAPPC10 Silent p.C607C 0.08 TCGA-FW-A5DX-01 21 47836718 47836718 C T PCNT Missense_Mutation p.P2296S 0.60 possibly_damaging(0.857) TCGA-FW-A5DX-01 22 21134267 21134267 G A SERPIND1 Missense_Mutation p.D223N 0.74 tolerated(0.25) benign(0.205) TCGA-FW-A5DX-01 22 23055591 23055591 C T IGLV3-21 Missense_Mutation p.S85F 0.21 deleterious(0.01) benign(0.423) TCGA-FW-A5DX-01 22 23101700 23101700 C T IGLV2-14 Silent p.L118L 0.15 TCGA-FW-A5DX-01 22 24108185 24108185 C T CHCHD10 3'UTR 0.27 TCGA-FW-A5DX-01 22 24108186 24108186 C T CHCHD10 3'UTR 0.27 TCGA-FW-A5DX-01 22 36897386 36897386 G A FOXRED2 Missense_Mutation p.S373F 0.11 deleterious(0) probably_damaging(0.933) TCGA-FW-A5DX-01 22 50584131 50584131 C A MOV10L1 Missense_Mutation p.A840D 0.74 deleterious(0.01) benign(0.043) TCGA-FW-A5DX-01 22 50584132 50584132 C T MOV10L1 Silent p.A840A 0.73 TCGA-FW-A5DX-01 22 51117584 51117584 C G SHANK3 Silent p.T246T 0.50 TCGA-FW-A5DX-01 2 113676170 113676170 G A IL37 Silent p.K147K 0.92 TCGA-FW-A5DX-01 2 179428363 179428363 G A TTN Missense_Mutation p.T27499I 0.90 TCGA-FW-A5DX-01 2 186692926 186692926 G A FSIP2 Silent p.K6928K 0.90 TCGA-FW-A5DX-01 2 186692927 186692927 G T FSIP2 Splice_Site p.X6928_splice 0.90 TCGA-FW-A5DX-01 2 20402352 20402352 A G SDC1 3'UTR 0.95 TCGA-FW-A5DX-01 2 21229252 21229252 G A APOB Silent p.T3496T 0.90 TCGA-FW-A5DX-01 2 239171671 239171671 G A PER2 Nonsense_Mutation p.Q359* 0.96 TCGA-FW-A5DX-01 2 31215756 31215756 C A GALNT14 Intron 0.96 TCGA-FW-A5DX-01 2 46602930 46602930 C T EPAS1 Missense_Mutation p.R330C 0.98 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DX-01 2 60687718 60687718 A G BCL11A Missense_Mutation p.Y777H 0.32 deleterious(0.04) benign(0.326) TCGA-FW-A5DX-01 3 108081263 108081263 C T HHLA2 Silent p.L360L 0.35 TCGA-FW-A5DX-01 3 108754262 108754262 C T MORC1 Missense_Mutation p.D462N 0.46 tolerated(1) benign(0.009) TCGA-FW-A5DX-01 3 140406896 140406896 C T TRIM42 Nonsense_Mutation p.Q458* 0.18 TCGA-FW-A5DX-01 3 167272464 167272464 A T WDR49 Intron 0.52 TCGA-FW-A5DX-01 3 169099312 169099312 T G MECOM Missense_Mutation p.Y37S 0.67 tolerated(0.78) unknown(0) TCGA-FW-A5DX-01 3 195492214 195492214 G A MUC4 Silent p.G4575G 0.49 TCGA-FW-A5DX-01 3 195495930 195495930 G A MUC4 Nonsense_Mutation p.Q4498* 0.43 TCGA-FW-A5DX-01 3 19554704 19554704 C T KCNH8 Silent p.S774S 0.58 TCGA-FW-A5DX-01 3 3030140 3030140 A T CNTN4 Silent p.G490G 0.41 TCGA-FW-A5DX-01 3 361463 361463 G A CHL1 Missense_Mutation p.E2K 0.22 tolerated_low_confidence(0.15) benign(0.007) TCGA-FW-A5DX-01 3 47045856 47045856 G A NBEAL2 Silent p.E2057E 0.61 TCGA-FW-A5DX-01 3 49215235 49215235 G T C3orf84 Missense_Mutation p.S150Y 0.32 deleterious(0.01) benign(0.409) TCGA-FW-A5DX-01 3 51673595 51673595 C T RAD54L2 Missense_Mutation p.S674L 0.53 tolerated(0.31) benign(0.004) TCGA-FW-A5DX-01 3 54913067 54913067 G A CACNA2D3 Missense_Mutation p.R578Q 0.32 tolerated(0.44) probably_damaging(0.99) TCGA-FW-A5DX-01 3 9057316 9057316 G A SRGAP3 Missense_Mutation p.P593L 0.59 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 3 9495492 9495492 C T SETD5 Nonsense_Mutation p.Q806* 0.50 TCGA-FW-A5DX-01 4 119064809 119064809 A G NDST3 Silent p.G503G 0.95 TCGA-FW-A5DX-01 4 41750553 41750553 G A PHOX2B Silent p.S25S 0.16 TCGA-FW-A5DX-01 4 5642312 5642312 C T EVC2 Missense_Mutation p.E467K 0.73 deleterious(0.02) benign(0.21) TCGA-FW-A5DX-01 4 7435762 7435762 T C PSAPL1 Missense_Mutation p.K282R 0.83 tolerated(0.16) benign(0.004) TCGA-FW-A5DX-01 4 77288489 77288489 C T CCDC158 Silent p.E596E 0.97 TCGA-FW-A5DX-01 4 86915857 86915857 G A ARHGAP24 Silent p.Q350Q 0.90 TCGA-FW-A5DX-01 4 89658686 89658686 C T FAM13A Silent p.R861R 0.82 TCGA-FW-A5DX-01 5 135416251 135416251 G C VTRNA2-1 RNA 0.95 TCGA-FW-A5DX-01 5 140517378 140517378 T G PCDHB5 Missense_Mutation p.F788V 0.91 tolerated_low_confidence(0.1) benign(0.01) TCGA-FW-A5DX-01 5 140773813 140773813 A G PCDHGA8 Missense_Mutation p.D478G 0.92 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FW-A5DX-01 5 140773817 140773817 C T PCDHGA8 Silent p.P479P 0.89 TCGA-FW-A5DX-01 5 159626162 159626162 C A FABP6 Missense_Mutation p.Q17K 0.78 deleterious_low_confidence(0) benign(0.092) TCGA-FW-A5DX-01 5 177035919 177035919 C T B4GALT7 Silent p.R244R 0.94 TCGA-FW-A5DX-01 5 36035969 36035969 G A UGT3A2 Missense_Mutation p.A468V 0.18 deleterious(0.05) possibly_damaging(0.73) TCGA-FW-A5DX-01 5 68715365 68715365 C T MARVELD2 Silent p.L51L 0.80 TCGA-FW-A5DX-01 5 82373335 82373335 C T XRCC4 5'Flank 1.00 TCGA-FW-A5DX-01 5 82373336 82373336 C T XRCC4 5'Flank 1.00 TCGA-FW-A5DX-01 5 95746569 95746569 G A PCSK1 Missense_Mutation p.S335F 0.88 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 6 144507863 144507863 C T STX11 Silent p.I33I 0.79 TCGA-FW-A5DX-01 6 160479976 160479976 C T IGF2R Silent p.I979I 0.86 TCGA-FW-A5DX-01 6 2623770 2623770 G A C6orf195 Missense_Mutation p.T96I 0.44 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-FW-A5DX-01 6 31525421 31525421 C T NFKBIL1 Silent p.F117F 0.97 TCGA-FW-A5DX-01 6 90605675 90605675 C T GJA10 Silent p.F496F 0.92 TCGA-FW-A5DX-01 7 111617273 111617273 C T DOCK4 Silent p.Q205Q 0.52 TCGA-FW-A5DX-01 7 113558840 113558840 C T PPP1R3A Missense_Mutation p.G71E 0.46 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 7 129950821 129950821 G A CPA4 Missense_Mutation p.E330K 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-FW-A5DX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.54 deleterious(0) probably_damaging(0.967) TCGA-FW-A5DX-01 7 143039185 143039185 C T CLCN1 Silent p.I582I 0.48 TCGA-FW-A5DX-01 7 143573381 143573381 G A FAM115A Silent p.G107G 0.56 TCGA-FW-A5DX-01 7 151970848 151970848 C T KMT2C Silent p.Q318Q 0.06 TCGA-FW-A5DX-01 7 157985048 157985048 G A PTPRN2 Missense_Mutation p.H174Y 0.40 deleterious(0.02) benign(0.004) TCGA-FW-A5DX-01 7 30491125 30491125 G A NOD1 Silent p.P636P 0.37 TCGA-FW-A5DX-01 7 34192778 34192778 G A BMPER Missense_Mutation p.E651K 0.55 tolerated(0.06) benign(0.007) TCGA-FW-A5DX-01 7 36462323 36462323 A G ANLN Missense_Mutation p.Q794R 0.57 tolerated(0.25) benign(0.02) TCGA-FW-A5DX-01 7 38370472 38370472 G A TRGV8 5'UTR 0.50 TCGA-FW-A5DX-01 7 38389439 38389439 G A TRGV5 5'UTR 0.16 TCGA-FW-A5DX-01 7 38398594 38398594 G A TRGV3 5'UTR 0.20 TCGA-FW-A5DX-01 7 42004565 42004565 C T GLI3 Missense_Mutation p.G1369D 0.55 tolerated_low_confidence(0.29) benign(0.002) TCGA-FW-A5DX-01 7 43477833 43477833 T C HECW1 Intron 0.49 TCGA-FW-A5DX-01 7 45931560 45931560 C T IGFBP1 Silent p.V183V 0.49 TCGA-FW-A5DX-01 7 50468176 50468176 T C IKZF1 Missense_Mutation p.F429L 0.58 deleterious(0) probably_damaging(0.974) TCGA-FW-A5DX-01 7 74211431 74211431 G A GTF2IRD2 Missense_Mutation p.P807L 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-FW-A5DX-01 7 7516792 7516792 C T COL28A1 Missense_Mutation p.G395E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DX-01 8 145151092 145151092 C T CYC1 Missense_Mutation p.A131V 0.71 deleterious(0.02) possibly_damaging(0.768) TCGA-FW-A5DX-01 8 145151093 145151093 C T CYC1 Silent p.A131A 0.71 TCGA-FW-A5DX-01 8 17166820 17166820 C T MTMR7 Missense_Mutation p.D373N 0.74 deleterious(0) possibly_damaging(0.465) TCGA-FW-A5DX-01 8 21904051 21904051 G A FGF17 Silent p.V88V 0.76 TCGA-FW-A5DX-01 8 25287476 25287476 G A KCTD9 Missense_Mutation p.S356F 0.11 deleterious(0) probably_damaging(0.912) TCGA-FW-A5DX-01 8 25296851 25296851 A G KCTD9 Missense_Mutation p.I148T 0.16 deleterious(0) probably_damaging(0.912) TCGA-FW-A5DX-01 8 32621447 32621447 C T NRG1 Missense_Mutation p.P489S 0.16 tolerated(0.06) probably_damaging(0.984) TCGA-FW-A5DX-01 8 39079180 39079180 G A ADAM32 Missense_Mutation p.G429R 0.07 tolerated(0.08) probably_damaging(0.914) TCGA-FW-A5DX-01 8 59496649 59496649 G A NSMAF 3'UTR 0.90 TCGA-FW-A5DX-01 8 59496650 59496650 G A NSMAF 3'UTR 0.89 TCGA-FW-A5DX-01 8 59750734 59750734 G A TOX Missense_Mutation p.A277V 0.93 deleterious(0) probably_damaging(0.992) TCGA-FW-A5DX-01 8 61767069 61767069 C T CHD7 Missense_Mutation p.S2308L 0.96 probably_damaging(0.945) TCGA-FW-A5DX-01 8 62289219 62289219 G A CLVS1 Missense_Mutation p.E171K 0.96 deleterious(0) possibly_damaging(0.845) TCGA-FW-A5DX-01 8 623733 623733 C A ERICH1 Nonsense_Mutation p.E207* 0.78 TCGA-FW-A5DX-01 8 95677189 95677189 C T ESRP1 Nonsense_Mutation p.R264* 0.68 TCGA-FW-A5DX-01 9 107298845 107298845 G A OR13C3 Missense_Mutation p.H84Y 0.91 deleterious(0) benign(0.107) TCGA-FW-A5DX-01 9 117119168 117119168 G T AKNA Missense_Mutation p.P941T 0.93 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 9 121930112 121930112 G A BRINP1 Silent p.L512L 0.92 TCGA-FW-A5DX-01 9 124962214 124962214 G A MORN5 3'UTR 0.89 TCGA-FW-A5DX-01 9 131289773 131289773 C T GLE1 Silent p.T427T 0.81 TCGA-FW-A5DX-01 9 37441866 37441866 G A ZBTB5 Missense_Mutation p.S228F 0.96 deleterious(0) benign(0.259) TCGA-FW-A5DX-01 9 73213394 73213418 GGAGACGGATATACCAGTAAATGAT - TRPM3 Frame_Shift_Del p.I977* 0.92 TCGA-FW-A5DX-01 X 107433700 107433700 G T COL4A6 Missense_Mutation p.H451N 0.96 benign(0.001) TCGA-FW-A5DX-01 X 111698383 111698383 G A ZCCHC16 Missense_Mutation p.E143K 0.98 tolerated(0.1) benign(0.083) TCGA-FW-A5DX-01 X 131212014 131212014 G A FRMD7 Silent p.I677I 0.97 TCGA-FW-A5DX-01 X 151900620 151900620 G A MAGEA12 Missense_Mutation p.P61S 0.99 tolerated(0.11) benign(0.292) TCGA-FW-A5DX-01 X 151909142 151909142 C T CSAG1 Silent p.F57F 0.97 TCGA-FW-A5DX-01 X 38535027 38535027 C T TSPAN7 Silent p.I170I 0.92 TCGA-FW-A5DX-01 X 48834826 48834826 G A GRIPAP1 Missense_Mutation p.S651L 1.00 benign(0.005) TCGA-FW-A5DX-01 X 73046551 73046551 C T XIST RNA 0.99 TCGA-FW-A5DX-01 X 78010772 78010772 C T LPAR4 Missense_Mutation p.R136C 0.98 deleterious(0) probably_damaging(1) TCGA-FW-A5DX-01 X 83361376 83361376 C T RPS6KA6 Silent p.V454V 1.00 TCGA-FW-A5DY-06 10 104176434 104176434 C T PSD Missense_Mutation p.G121E 0.14 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-FW-A5DY-06 10 123843076 123843076 C T TACC2 Missense_Mutation p.A354V 0.14 benign(0.045) TCGA-FW-A5DY-06 10 124457483 124457483 G A C10orf120 Silent p.Y258Y 0.06 TCGA-FW-A5DY-06 10 25887447 25887447 G A GPR158 Silent p.A964A 0.05 TCGA-FW-A5DY-06 10 5204836 5204836 C T AKR1CL1 Missense_Mutation p.E81K 0.06 deleterious(0) benign(0.006) TCGA-FW-A5DY-06 10 5248279 5248279 C T AKR1C4 Silent p.I163I 0.08 TCGA-FW-A5DY-06 10 55566609 55566609 C T PCDH15 Silent p.L1592L 0.06 TCGA-FW-A5DY-06 11 113699951 113699951 G A USP28 Missense_Mutation p.P343S 0.07 tolerated(0.79) benign(0.021) TCGA-FW-A5DY-06 11 119056848 119056848 C T PDZD3 Missense_Mutation p.S31F 0.05 deleterious(0.03) possibly_damaging(0.888) TCGA-FW-A5DY-06 11 123901064 123901064 C T OR10G8 Silent p.I245I 0.10 TCGA-FW-A5DY-06 11 123909456 123909456 A G OR10G7 Missense_Mutation p.S85P 0.05 deleterious(0.05) possibly_damaging(0.522) TCGA-FW-A5DY-06 11 5289655 5289655 G A HBE1 3'UTR 0.14 TCGA-FW-A5DY-06 11 5510853 5510853 G A OR52D1 Missense_Mutation p.R306Q 0.06 tolerated(0.12) benign(0.019) TCGA-FW-A5DY-06 11 55418737 55418737 C T OR4S2 Missense_Mutation p.R120C 0.13 deleterious(0.01) benign(0.01) TCGA-FW-A5DY-06 11 55432922 55432922 G A OR4C6 Missense_Mutation p.G94S 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-FW-A5DY-06 11 6815915 6815915 C T OR6A2 3'UTR 0.06 TCGA-FW-A5DY-06 11 7949935 7949935 A C OR10A6 Missense_Mutation p.I92S 0.11 deleterious(0) probably_damaging(0.96) TCGA-FW-A5DY-06 12 104056703 104056703 G A STAB2 Missense_Mutation p.G650E 0.07 deleterious(0.01) probably_damaging(0.913) TCGA-FW-A5DY-06 12 104121053 104121053 C T STAB2 Silent p.F1620F 0.04 TCGA-FW-A5DY-06 12 121157743 121157743 C T UNC119B Missense_Mutation p.P222S 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 12 130921606 130921606 G C RIMBP2 Missense_Mutation p.D612E 0.15 tolerated(0.68) benign(0.01) TCGA-FW-A5DY-06 12 18891407 18891407 C T CAPZA3 Missense_Mutation p.P69S 0.07 tolerated(0.8) benign(0.006) TCGA-FW-A5DY-06 12 20868132 20868132 C T SLCO1C1 Missense_Mutation p.R197C 0.06 deleterious(0) probably_damaging(0.993) TCGA-FW-A5DY-06 12 57323261 57323261 C T SDR9C7 Missense_Mutation p.E213K 0.08 tolerated(0.22) benign(0.006) TCGA-FW-A5DY-06 12 57859603 57859603 G A GLI1 Silent p.E219E 0.08 TCGA-FW-A5DY-06 12 71977559 71977559 C T LGR5 Missense_Mutation p.S590F 0.07 deleterious(0) probably_damaging(0.968) TCGA-FW-A5DY-06 12 96728497 96728497 C T CDK17 Missense_Mutation p.E40K 0.10 tolerated_low_confidence(0.63) benign(0.002) TCGA-FW-A5DY-06 14 106236025 106236025 G A IGHG3 Silent p.A260A 0.06 TCGA-FW-A5DY-06 14 34993985 34993985 G A EAPP Missense_Mutation p.R167C 0.12 deleterious(0.05) benign(0.013) TCGA-FW-A5DY-06 14 52535602 52535602 G A NID2 Silent p.F37F 0.11 TCGA-FW-A5DY-06 14 59112912 59112912 C T DACT1 Missense_Mutation p.P524L 0.09 tolerated(0.16) possibly_damaging(0.474) TCGA-FW-A5DY-06 14 70634003 70634003 C T SLC8A3 Silent p.K379K 0.05 TCGA-FW-A5DY-06 14 94962881 94962881 C T SERPINA12 Missense_Mutation p.G245D 0.07 deleterious(0.02) possibly_damaging(0.79) TCGA-FW-A5DY-06 15 25440076 25440076 G A SNORD115-14 RNA 0.06 TCGA-FW-A5DY-06 15 34646038 34646038 T C NUTM1 Missense_Mutation p.L319P 0.05 tolerated(1) benign(0.002) TCGA-FW-A5DY-06 15 43820550 43820550 G A MAP1A Missense_Mutation p.M2293I 0.08 benign(0.002) TCGA-FW-A5DY-06 15 43820551 43820551 G A MAP1A Missense_Mutation p.E2294K 0.08 possibly_damaging(0.447) TCGA-FW-A5DY-06 16 23079465 23079465 G A USP31 Missense_Mutation p.P1321S 0.07 tolerated_low_confidence(0.24) benign(0.37) TCGA-FW-A5DY-06 16 23713770 23713770 C T ERN2 Missense_Mutation p.S389N 0.05 deleterious(0.03) possibly_damaging(0.885) TCGA-FW-A5DY-06 16 51174110 51174110 G A SALL1 Missense_Mutation p.P675S 0.07 deleterious(0) probably_damaging(0.996) TCGA-FW-A5DY-06 16 57738925 57738925 G A CCDC135 Silent p.R279R 0.14 TCGA-FW-A5DY-06 16 67985083 67985083 G T SLC12A4 Silent p.S421S 0.08 TCGA-FW-A5DY-06 16 71103303 71103303 G A HYDIN Missense_Mutation p.S614L 0.07 benign(0.042) TCGA-FW-A5DY-06 16 84217325 84217325 G A TAF1C Silent p.L66L 0.05 TCGA-FW-A5DY-06 16 9858028 9858028 C T GRIN2A Missense_Mutation p.E1125K 0.06 tolerated(0.26) possibly_damaging(0.676) TCGA-FW-A5DY-06 17 10235497 10235497 G A MYH13 Silent p.F739F 0.04 TCGA-FW-A5DY-06 17 10398581 10398581 G A MYH1 Silent p.I1741I 0.05 TCGA-FW-A5DY-06 17 11539978 11539978 G A DNAH9 Missense_Mutation p.E555K 0.06 benign(0.072) TCGA-FW-A5DY-06 17 16612140 16612140 G A CCDC144A Missense_Mutation p.D257N 0.09 tolerated(0.19) possibly_damaging(0.811) TCGA-FW-A5DY-06 17 39596905 39596905 C T KRT38 Missense_Mutation p.G90E 0.07 deleterious(0.02) probably_damaging(0.911) TCGA-FW-A5DY-06 17 40939527 40939527 C T WNK4 Missense_Mutation p.L570F 0.10 tolerated(0.49) unknown(0) TCGA-FW-A5DY-06 17 44954020 44954020 G A WNT9B Nonsense_Mutation p.W337* 0.13 TCGA-FW-A5DY-06 17 4500618 4500618 A T SMTNL2 Missense_Mutation p.E420V 0.08 deleterious(0) probably_damaging(0.977) TCGA-FW-A5DY-06 17 45885690 45885690 G A OSBPL7 Silent p.G832G 0.06 TCGA-FW-A5DY-06 17 48452942 48452942 C T EME1 Missense_Mutation p.H125Y 0.06 deleterious(0.03) benign(0.047) TCGA-FW-A5DY-06 17 7246848 7246848 G A ACAP1 Silent p.G165G 0.08 TCGA-FW-A5DY-06 17 7691434 7691434 G A DNAH2 Missense_Mutation p.E2258K 0.11 benign(0.094) TCGA-FW-A5DY-06 18 28574211 28574213 TCT - DSC3 In_Frame_Del p.E873del 0.15 TCGA-FW-A5DY-06 18 28986090 28986090 G A DSG4 Missense_Mutation p.E563K 0.12 tolerated(0.57) benign(0.002) TCGA-FW-A5DY-06 18 30092442 30092442 C T WBP11P1 RNA 0.08 TCGA-FW-A5DY-06 18 60242709 60242709 C T ZCCHC2 Missense_Mutation p.S1132L 0.06 deleterious(0) probably_damaging(0.996) TCGA-FW-A5DY-06 19 2413800 2413800 G A TMPRSS9 Missense_Mutation p.G419R 0.10 deleterious(0.01) probably_damaging(1) TCGA-FW-A5DY-06 19 35775748 35775748 G A HAMP Nonsense_Mutation p.W49* 0.07 TCGA-FW-A5DY-06 19 42354403 42354403 C T DMRTC2 Missense_Mutation p.P260L 0.09 deleterious(0) possibly_damaging(0.632) TCGA-FW-A5DY-06 19 44130997 44130997 G A CADM4 Silent p.L146L 0.09 TCGA-FW-A5DY-06 19 44891856 44891856 C T ZNF285 Missense_Mutation p.S184N 0.09 tolerated(0.39) benign(0.001) TCGA-FW-A5DY-06 19 53668999 53668999 G A ZNF665 Silent p.N248N 0.10 TCGA-FW-A5DY-06 19 54848200 54848200 G A LILRA4 Silent p.H389H 0.05 TCGA-FW-A5DY-06 19 9059723 9059723 G A MUC16 Silent p.V9241V 0.09 TCGA-FW-A5DY-06 19 9067233 9067233 C T MUC16 Missense_Mutation p.R6738Q 0.10 unknown(0) TCGA-FW-A5DY-06 19 9070090 9070090 C T MUC16 Missense_Mutation p.D5786N 0.08 unknown(0) TCGA-FW-A5DY-06 19 9072845 9072845 C T MUC16 Missense_Mutation p.M4867I 0.11 unknown(0) TCGA-FW-A5DY-06 19 9076180 9076180 C T MUC16 Missense_Mutation p.G3756R 0.05 unknown(0) TCGA-FW-A5DY-06 1 110301039 110301039 G A EPS8L3 Missense_Mutation p.P207S 0.08 tolerated(0.21) benign(0.273) TCGA-FW-A5DY-06 1 113266642 113266642 C T FAM19A3 Missense_Mutation p.S114L 0.13 tolerated(0.7) benign(0) TCGA-FW-A5DY-06 1 114355046 114355046 C T RSBN1 5'UTR 0.24 TCGA-FW-A5DY-06 1 114682439 114682439 C T SYT6 Missense_Mutation p.E19K 0.07 tolerated_low_confidence(0.74) benign(0.008) TCGA-FW-A5DY-06 1 12921515 12921515 G A PRAMEF2 Missense_Mutation p.E436K 0.09 tolerated(0.21) probably_damaging(0.994) TCGA-FW-A5DY-06 1 152282971 152282971 C T FLG Missense_Mutation p.G1464E 0.12 probably_damaging(0.931) TCGA-FW-A5DY-06 1 152383212 152383212 C T CRNN Missense_Mutation p.G116R 0.05 tolerated(0.05) benign(0.132) TCGA-FW-A5DY-06 1 153012590 153012590 G A SPRR2D 3'UTR 0.07 TCGA-FW-A5DY-06 1 155110691 155110691 C T SLC50A1 Silent p.I200I 0.10 TCGA-FW-A5DY-06 1 155110692 155110692 C T SLC50A1 Missense_Mutation p.R201C 0.10 deleterious(0.04) possibly_damaging(0.563) TCGA-FW-A5DY-06 1 158576493 158576493 G A OR10Z1 Missense_Mutation p.D89N 0.09 tolerated(0.56) benign(0) TCGA-FW-A5DY-06 1 159170629 159170629 G A CADM3 Missense_Mutation p.D406N 0.06 deleterious(0) possibly_damaging(0.849) TCGA-FW-A5DY-06 1 161023168 161023168 C T ARHGAP30 Missense_Mutation p.D182N 0.12 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DY-06 1 171073016 171073016 C T FMO3 Missense_Mutation p.P75S 0.06 deleterious(0.01) possibly_damaging(0.764) TCGA-FW-A5DY-06 1 171251205 171251205 G A FMO1 Missense_Mutation p.V306I 0.15 deleterious(0.04) benign(0.055) TCGA-FW-A5DY-06 1 173570932 173570932 C T SLC9C2 5'UTR 0.06 TCGA-FW-A5DY-06 1 17570670 17570670 G A PADI1 Missense_Mutation p.E642K 0.07 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DY-06 1 176525494 176525494 G A PAPPA2 Silent p.A12A 0.06 TCGA-FW-A5DY-06 1 176738746 176738746 G A PAPPA2 Missense_Mutation p.E1443K 0.13 tolerated(0.14) benign(0.007) TCGA-FW-A5DY-06 1 176852083 176852083 G A ASTN1 Missense_Mutation p.P1092S 0.15 tolerated(0.94) possibly_damaging(0.622) TCGA-FW-A5DY-06 1 201012551 201012551 C T CACNA1S Missense_Mutation p.E1636K 0.17 tolerated_low_confidence(0.26) benign(0.405) TCGA-FW-A5DY-06 1 207039325 207039325 G A IL20 Missense_Mutation p.R43Q 0.15 tolerated(0.38) benign(0.061) TCGA-FW-A5DY-06 1 21900198 21900198 G A ALPL Silent p.R301R 0.11 TCGA-FW-A5DY-06 1 220789319 220789319 T C MARK1 Silent p.I178I 0.14 TCGA-FW-A5DY-06 1 223568020 223568020 G A C1orf65 Silent p.L401L 0.09 TCGA-FW-A5DY-06 1 223568021 223568021 G A C1orf65 Missense_Mutation p.V402M 0.10 tolerated(0.06) possibly_damaging(0.54) TCGA-FW-A5DY-06 1 225590933 225590933 G A LBR 3'UTR 0.16 TCGA-FW-A5DY-06 1 228473847 228473847 C T OBSCN Missense_Mutation p.R3454C 0.14 benign(0.004) TCGA-FW-A5DY-06 1 228487816 228487816 G A OBSCN Missense_Mutation p.E4570K 0.10 probably_damaging(0.991) TCGA-FW-A5DY-06 1 232649919 232649919 G A SIPA1L2 Silent p.S389S 0.09 TCGA-FW-A5DY-06 1 33958990 33958990 G A ZSCAN20 Missense_Mutation p.A550T 0.07 deleterious(0.03) probably_damaging(1) TCGA-FW-A5DY-06 1 3677844 3677844 G A CCDC27 Splice_Site p.X238_splice 0.15 TCGA-FW-A5DY-06 1 40702789 40702789 C T RLF Silent p.F805F 0.11 TCGA-FW-A5DY-06 1 40773126 40773126 C T COL9A2 Missense_Mutation p.G334S 0.14 deleterious(0) probably_damaging(0.959) TCGA-FW-A5DY-06 1 53990500 53990500 G A GLIS1 Missense_Mutation p.R340C 0.05 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DY-06 1 62393437 62393437 T G INADL Silent p.P1202P 0.05 TCGA-FW-A5DY-06 1 85422156 85422156 G A MCOLN2 Missense_Mutation p.P175S 0.08 tolerated(0.12) benign(0.023) TCGA-FW-A5DY-06 1 86200549 86200549 C T COL24A1 Silent p.R1627R 0.09 TCGA-FW-A5DY-06 1 86200550 86200550 C T COL24A1 Missense_Mutation p.R1627K 0.09 deleterious(0.04) benign(0.004) TCGA-FW-A5DY-06 1 9079293 9079293 G A SLC2A7 Silent p.S137S 0.10 TCGA-FW-A5DY-06 1 9416478 9416478 C T SPSB1 Silent p.S176S 0.09 TCGA-FW-A5DY-06 20 23065210 23065210 G A CD93 Silent p.S540S 0.09 TCGA-FW-A5DY-06 20 46276031 46276031 G A NCOA3 Missense_Mutation p.R1156Q 0.10 deleterious(0) probably_damaging(0.982) TCGA-FW-A5DY-06 20 48098851 48098851 C T KCNB1 Missense_Mutation p.R56Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DY-06 20 49575823 49575823 C T MOCS3 Silent p.L148L 0.08 TCGA-FW-A5DY-06 20 56078502 56078502 C T CTCFL Silent p.A610A 0.08 TCGA-FW-A5DY-06 21 45798933 45798933 G A TRPM2 Silent p.S356S 0.05 TCGA-FW-A5DY-06 22 25272552 25272552 G A SGSM1 Missense_Mutation p.D489N 0.06 deleterious(0.04) benign(0.199) TCGA-FW-A5DY-06 22 30856031 30856031 C T SEC14L3 Missense_Mutation p.D394N 0.09 tolerated_low_confidence(0.39) benign(0.073) TCGA-FW-A5DY-06 22 38245559 38245559 C T EIF3L Intron 0.06 TCGA-FW-A5DY-06 22 38822825 38822825 G A KCNJ4 Missense_Mutation p.S438F 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-FW-A5DY-06 22 40139654 40139654 G A ENTHD1 3'UTR 0.10 TCGA-FW-A5DY-06 22 50547094 50547094 C T MOV10L1 Silent p.I188I 0.05 TCGA-FW-A5DY-06 2 102480359 102480359 C G MAP4K4 Intron 0.07 TCGA-FW-A5DY-06 2 121726307 121726307 C T GLI2 Missense_Mutation p.P221S 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DY-06 2 135076273 135076273 A T MGAT5 Missense_Mutation p.D179V 0.05 deleterious(0.03) possibly_damaging(0.746) TCGA-FW-A5DY-06 2 136567238 136567238 G A LCT Silent p.F893F 0.05 TCGA-FW-A5DY-06 2 162751222 162751222 C T SLC4A10 Missense_Mutation p.R410C 0.12 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DY-06 2 163241426 163241426 C T KCNH7 Missense_Mutation p.D912N 0.06 tolerated(0.29) benign(0.028) TCGA-FW-A5DY-06 2 166894466 166894466 C T SCN1A Silent p.K922K 0.11 TCGA-FW-A5DY-06 2 168100497 168100497 G A XIRP2 Silent p.E865E 0.08 TCGA-FW-A5DY-06 2 168726333 168726333 C T B3GALT1 Missense_Mutation p.H262Y 0.09 tolerated(0.26) benign(0.241) TCGA-FW-A5DY-06 2 175979354 175979354 G A ATF2 Intron 0.15 TCGA-FW-A5DY-06 2 179416811 179416811 C T TTN Nonsense_Mutation p.W30272* 0.09 TCGA-FW-A5DY-06 2 179495059 179495059 G A TTN Silent p.S14730S 0.11 TCGA-FW-A5DY-06 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.06 TCGA-FW-A5DY-06 2 179579905 179579905 G A TTN Missense_Mutation p.P8670S 0.08 TCGA-FW-A5DY-06 2 210557675 210557675 G A MAP2 Missense_Mutation p.E261K 0.11 deleterious_low_confidence(0.01) benign(0.345) TCGA-FW-A5DY-06 2 233899636 233899636 C T NEU2 Nonsense_Mutation p.Q338* 0.05 TCGA-FW-A5DY-06 2 234621888 234621888 G A UGT1A5 Nonsense_Mutation p.W84* 0.10 TCGA-FW-A5DY-06 2 31558829 31558829 C T XDH Missense_Mutation p.V1333I 0.07 tolerated(0.35) benign(0.021) TCGA-FW-A5DY-06 3 108072559 108072559 G A HHLA2 Missense_Mutation p.G117E 0.10 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 3 111603426 111603426 G A PHLDB2 Missense_Mutation p.E168K 0.08 deleterious(0.02) benign(0.184) TCGA-FW-A5DY-06 3 119887018 119887018 G A GPR156 Missense_Mutation p.P436S 0.12 tolerated(0.33) benign(0.003) TCGA-FW-A5DY-06 3 121409843 121409843 G A GOLGB1 Missense_Mutation p.L2790F 0.07 benign(0.249) TCGA-FW-A5DY-06 3 124748122 124748122 G A HEG1 Missense_Mutation p.S176L 0.19 tolerated_low_confidence(0.23) benign(0.018) TCGA-FW-A5DY-06 3 133098868 133098868 A G TMEM108 Missense_Mutation p.T105A 0.08 tolerated_low_confidence(0.31) benign(0.002) TCGA-FW-A5DY-06 3 134322527 134322527 C T KY Missense_Mutation p.G627E 0.05 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 3 155212168 155212168 T C PLCH1 Missense_Mutation p.N666S 0.10 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DY-06 3 155838545 155838545 C T KCNAB1 Missense_Mutation p.P49S 0.06 tolerated_low_confidence(0.06) benign(0.001) TCGA-FW-A5DY-06 3 155838546 155838546 C T KCNAB1 Missense_Mutation p.P49L 0.06 tolerated_low_confidence(0.12) benign(0.007) TCGA-FW-A5DY-06 3 194081289 194081289 C T LRRC15 Missense_Mutation p.E168K 0.09 tolerated(0.38) benign(0.061) TCGA-FW-A5DY-06 3 38639364 38639364 G A SCN5A Silent p.I706I 0.08 TCGA-FW-A5DY-06 3 38936403 38936403 C T SCN11A Missense_Mutation p.R819K 0.11 tolerated(0.13) benign(0.01) TCGA-FW-A5DY-06 3 44986679 44986679 C T ZDHHC3 Missense_Mutation p.D138N 0.07 deleterious(0) possibly_damaging(0.783) TCGA-FW-A5DY-06 3 46784439 46784439 C T PRSS45 Missense_Mutation p.M139I 0.12 deleterious(0.04) benign(0.187) TCGA-FW-A5DY-06 3 69097377 69097377 G A TMF1 Missense_Mutation p.S160L 0.07 tolerated_low_confidence(0.14) benign(0) TCGA-FW-A5DY-06 3 71008511 71008511 C T FOXP1 Missense_Mutation p.D643N 0.07 tolerated(0.22) probably_damaging(0.964) TCGA-FW-A5DY-06 4 102965042 102965042 C T BANK1 Silent p.F649F 0.09 TCGA-FW-A5DY-06 4 110901981 110901981 G A EGF Splice_Site p.X741_splice 0.09 TCGA-FW-A5DY-06 4 121698406 121698406 G A PRDM5 Missense_Mutation p.P492S 0.07 tolerated(0.08) probably_damaging(0.993) TCGA-FW-A5DY-06 4 128627979 128627979 C T INTU Missense_Mutation p.P709L 0.09 deleterious(0) probably_damaging(0.998) TCGA-FW-A5DY-06 4 15444108 15444108 C T C1QTNF7 Silent p.F192F 0.05 TCGA-FW-A5DY-06 4 189061021 189061021 G A TRIML1 Silent p.K103K 0.10 TCGA-FW-A5DY-06 4 189068456 189068456 C T TRIML1 Missense_Mutation p.S446F 0.11 deleterious(0) probably_damaging(0.999) TCGA-FW-A5DY-06 4 25677815 25677815 C G SLC34A2 Missense_Mutation p.P506R 0.06 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 4 52961130 52961130 C T SPATA18 3'UTR 0.10 TCGA-FW-A5DY-06 4 69433930 69433930 C T UGT2B17 Missense_Mutation p.M91I 0.16 tolerated(0.22) benign(0.003) TCGA-FW-A5DY-06 4 72432773 72432773 C T SLC4A4 Missense_Mutation p.P1051L 0.09 deleterious(0.04) benign(0.001) TCGA-FW-A5DY-06 4 83971031 83971031 C T COPS4 Intron 0.12 TCGA-FW-A5DY-06 4 96762262 96762262 A G PDHA2 Missense_Mutation p.R321G 0.12 deleterious(0.02) possibly_damaging(0.869) TCGA-FW-A5DY-06 5 120022107 120022107 G A PRR16 Silent p.R183R 0.08 TCGA-FW-A5DY-06 5 1212511 1212511 C T SLC6A19 Missense_Mutation p.S192F 0.05 deleterious(0.01) benign(0.385) TCGA-FW-A5DY-06 5 140237490 140237490 C T PCDHA10 Silent p.I619I 0.14 TCGA-FW-A5DY-06 5 140625338 140625338 C T PCDHB15 Silent p.A64A 0.09 TCGA-FW-A5DY-06 5 140755051 140755051 G A PCDHGA6 Silent p.R467R 0.06 TCGA-FW-A5DY-06 5 161128522 161128522 C T GABRA6 Missense_Mutation p.H369Y 0.04 tolerated(0.69) benign(0.002) TCGA-FW-A5DY-06 5 178418435 178418435 C T GRM6 Missense_Mutation p.D283N 0.06 deleterious(0) probably_damaging(0.976) TCGA-FW-A5DY-06 5 180057744 180057744 C T FLT4 Missense_Mutation p.G71R 0.12 deleterious(0.04) benign(0.009) TCGA-FW-A5DY-06 5 68728456 68728456 C T MARVELD2 Missense_Mutation p.P429S 0.09 deleterious(0.04) probably_damaging(0.931) TCGA-FW-A5DY-06 5 95746680 95746680 C T PCSK1 Missense_Mutation p.G298E 0.12 deleterious(0) probably_damaging(0.996) TCGA-FW-A5DY-06 6 29012134 29012134 G A OR2W1 Silent p.F273F 0.09 TCGA-FW-A5DY-06 6 29054045 29054045 G A OR2B3 3'UTR 0.19 TCGA-FW-A5DY-06 6 41309748 41309748 C T NCR2 Intron 0.07 TCGA-FW-A5DY-06 6 44413473 44413473 C T CDC5L Nonsense_Mutation p.Q725* 0.11 TCGA-FW-A5DY-06 6 55925732 55925732 C T COL21A1 Missense_Mutation p.G770E 0.12 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 6 56464962 56464962 G A DST Missense_Mutation p.L1244F 0.07 benign(0.238) TCGA-FW-A5DY-06 6 63990442 63990442 C T LGSN Silent p.T338T 0.06 TCGA-FW-A5DY-06 7 100285685 100285685 G A GIGYF1 Silent p.S28S 0.17 TCGA-FW-A5DY-06 7 120979028 120979028 G A WNT16 Missense_Mutation p.E243K 0.07 tolerated(0.29) benign(0.038) TCGA-FW-A5DY-06 7 128489239 128489239 C T FLNC Silent p.S1644S 0.07 TCGA-FW-A5DY-06 7 135392921 135392921 C T SLC13A4 Nonsense_Mutation p.W102* 0.08 TCGA-FW-A5DY-06 7 142240016 142240016 G A TRBV9 5'UTR 0.08 TCGA-FW-A5DY-06 7 143771516 143771516 C T OR2A25 Silent p.V68V 0.10 TCGA-FW-A5DY-06 7 148769143 148769143 G A ZNF786 Missense_Mutation p.R241W 0.10 deleterious(0.01) probably_damaging(0.939) TCGA-FW-A5DY-06 7 157387990 157387990 C T PTPRN2 Silent p.R812R 0.15 TCGA-FW-A5DY-06 7 2581424 2581424 G A BRAT1 Silent p.L354L 0.09 TCGA-FW-A5DY-06 7 2962938 2962938 C T CARD11 Missense_Mutation p.G657E 0.06 deleterious(0.01) possibly_damaging(0.548) TCGA-FW-A5DY-06 7 71177007 71177007 G A WBSCR17 Missense_Mutation p.G558E 0.07 tolerated(0.18) benign(0.007) TCGA-FW-A5DY-06 7 73668616 73668616 T A RFC2 Missense_Mutation p.H33L 0.15 tolerated(0.29) benign(0.001) TCGA-FW-A5DY-06 8 10388874 10388874 C T PRSS55 Silent p.V139V 0.05 TCGA-FW-A5DY-06 8 133945853 133945853 G A TG Missense_Mutation p.E1622K 0.06 deleterious(0.03) benign(0.001) TCGA-FW-A5DY-06 8 30560740 30560740 G A GSR Silent p.I170I 0.08 TCGA-FW-A5DY-06 8 35583956 35583956 C T UNC5D Silent p.I530I 0.06 TCGA-FW-A5DY-06 8 53071651 53071651 G A ST18 Missense_Mutation p.P538L 0.06 deleterious(0.01) benign(0.247) TCGA-FW-A5DY-06 8 53570448 53570448 G A RB1CC1 Silent p.S647S 0.13 TCGA-FW-A5DY-06 8 69046490 69046490 G C PREX2 Missense_Mutation p.Q1321H 0.08 deleterious(0.01) possibly_damaging(0.656) TCGA-FW-A5DY-06 8 87229838 87229838 C T SLC7A13 Missense_Mutation p.G347E 0.08 deleterious(0) possibly_damaging(0.449) TCGA-FW-A5DY-06 9 101767251 101767251 G A COL15A1 Silent p.G424G 0.07 TCGA-FW-A5DY-06 9 116856657 116856657 G A KIF12 Nonsense_Mutation p.Q262* 0.08 TCGA-FW-A5DY-06 9 136277544 136277544 G A REXO4 Missense_Mutation p.A262V 0.06 tolerated(0.34) benign(0.029) TCGA-FW-A5DY-06 9 137713982 137713982 C T COL5A1 Missense_Mutation p.P1532S 0.07 unknown(0) TCGA-FW-A5DY-06 9 19786832 19786832 G A SLC24A2 Silent p.S11S 0.07 TCGA-FW-A5DY-06 9 35853227 35853227 C T TMEM8B Silent p.F352F 0.08 TCGA-FW-A5DY-06 9 71503934 71503934 A G PIP5K1B Missense_Mutation p.N119S 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-FW-A5DY-06 9 80043929 80043929 C T GNA14 Missense_Mutation p.R206Q 0.07 deleterious(0) probably_damaging(0.924) TCGA-FW-A5DY-06 9 97329700 97329700 G A FBP2 Intron 0.07 TCGA-FW-A5DY-06 X 101857708 101857708 C T ARMCX5 Silent p.P213P 0.10 TCGA-FW-A5DY-06 X 105153272 105153272 G A NRK Missense_Mutation p.E548K 0.10 deleterious(0.01) benign(0.298) TCGA-FW-A5DY-06 X 118709340 118709340 C T UBE2A Missense_Mutation p.P43L 0.08 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 X 119077539 119077539 C T NKAP Silent p.P10P 0.16 TCGA-FW-A5DY-06 X 129147715 129147715 C T BCORL1 Missense_Mutation p.P323S 0.16 unknown(0) TCGA-FW-A5DY-06 X 129156903 129156903 C T BCORL1 Silent p.F1213F 0.06 TCGA-FW-A5DY-06 X 134303676 134303676 C T CT55 Missense_Mutation p.G41R 0.10 deleterious(0) probably_damaging(0.997) TCGA-FW-A5DY-06 X 135445712 135445712 C T GPR112 Missense_Mutation p.P2452S 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-FW-A5DY-06 X 135582869 135582869 C T HTATSF1 Silent p.S154S 0.06 TCGA-FW-A5DY-06 X 135630985 135630985 C A VGLL1 Missense_Mutation p.P151H 0.07 deleterious(0.02) probably_damaging(0.931) TCGA-FW-A5DY-06 X 153697401 153697401 C T PLXNA3 Silent p.T1479T 0.10 TCGA-FW-A5DY-06 X 155003856 155003856 C T SPRY3 Missense_Mutation p.S108L 0.06 tolerated(0.51) benign(0.17) TCGA-FW-A5DY-06 X 24006813 24006813 G A KLHL15 Missense_Mutation p.S347F 0.09 deleterious(0) probably_damaging(0.96) TCGA-FW-A5DY-06 X 43639630 43639630 G T MAOB Silent p.A346A 0.09 TCGA-FW-A5DY-06 X 51640337 51640337 G A MAGED1 Missense_Mutation p.D542N 0.06 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FW-A5DY-06 X 5811091 5811091 C T NLGN4X Missense_Mutation p.D740N 0.06 tolerated_low_confidence(0.25) benign(0.148) TCGA-FW-A5DY-06 X 71684502 71684502 G A HDAC8 Missense_Mutation p.P273S 0.09 deleterious(0) probably_damaging(1) TCGA-FW-A5DY-06 X 73068887 73068887 G A XIST RNA 0.10 TCGA-FW-A5DY-06 X 73960908 73960908 G A KIAA2022 Missense_Mutation p.P1162S 0.05 tolerated(0.2) benign(0.014) TCGA-FW-A5DY-06 X 77271293 77271293 C T ATP7A Silent p.I847I 0.07 TCGA-FW-A5DY-06 X 77301835 77301835 G A ATP7A Missense_Mutation p.S1424N 0.04 tolerated(0.1) benign(0.001) TCGA-FW-A5DY-06 X 83402023 83402023 C T RPS6KA6 Silent p.V128V 0.08 TCGA-GF-A2C7-01 10 135368926 135368926 C T SYCE1 Missense_Mutation p.E283K 0.59 deleterious(0.01) benign(0.133) TCGA-GF-A2C7-01 10 28420536 28420536 C T MPP7 Missense_Mutation p.E134K 0.73 deleterious(0.03) probably_damaging(0.997) TCGA-GF-A2C7-01 10 71174729 71174729 C T TACR2 Missense_Mutation p.E187K 0.79 tolerated(0.17) benign(0.043) TCGA-GF-A2C7-01 10 88476097 88476097 C T LDB3 Silent p.T420T 0.61 TCGA-GF-A2C7-01 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.40 TCGA-GF-A2C7-01 10 95400680 95400680 G A PDE6C Missense_Mutation p.G581R 0.83 deleterious(0) probably_damaging(1) TCGA-GF-A2C7-01 11 3429978 3429978 G A TSSC2 RNA 0.58 TCGA-GF-A2C7-01 11 36595652 36595652 C T RAG1 Silent p.I266I 0.10 TCGA-GF-A2C7-01 11 5841865 5841865 G A OR52N2 Silent p.L100L 0.08 TCGA-GF-A2C7-01 11 5862851 5862851 C T OR52E6 Missense_Mutation p.E93K 0.15 tolerated(0.06) benign(0.075) TCGA-GF-A2C7-01 11 64056722 64056722 C T GPR137 Missense_Mutation p.P438L 0.49 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-GF-A2C7-01 12 103306566 103306566 G A PAH Intron 0.49 TCGA-GF-A2C7-01 12 130898827 130898827 G A RIMBP2 Missense_Mutation p.S832F 0.39 deleterious(0.02) possibly_damaging(0.896) TCGA-GF-A2C7-01 12 14610194 14610194 G A ATF7IP Missense_Mutation p.S708N 0.41 tolerated_low_confidence(0.15) unknown(0) TCGA-GF-A2C7-01 12 6647267 6647267 G A GAPDH Nonsense_Mutation p.W313* 0.32 TCGA-GF-A2C7-01 13 98996100 98996100 C T FARP1 Missense_Mutation p.P86S 0.37 tolerated(0.09) benign(0.02) TCGA-GF-A2C7-01 14 106829696 106829696 G A IGHV4-34 Silent p.L89L 0.45 TCGA-GF-A2C7-01 14 23817500 23817500 G A SLC22A17 Silent p.F236F 0.42 TCGA-GF-A2C7-01 14 76135802 76135802 C T TTLL5 Missense_Mutation p.P40S 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-GF-A2C7-01 15 59911184 59911184 G A GCNT3 Silent p.R249R 0.49 TCGA-GF-A2C7-01 15 65899772 65899772 G A VWA9 Intron 0.42 TCGA-GF-A2C7-01 15 75982869 75982869 G A CSPG4 Silent p.S179S 0.35 TCGA-GF-A2C7-01 16 1279725 1279725 G A TPSB2 Silent p.A25A 0.22 TCGA-GF-A2C7-01 16 1279726 1279726 G A TPSB2 Missense_Mutation p.A25V 0.18 tolerated(0.26) benign(0.073) TCGA-GF-A2C7-01 16 23392275 23392275 G A SCNN1B 3'UTR 0.38 TCGA-GF-A2C7-01 16 31153047 31153047 C T PRSS36 Missense_Mutation p.G586S 0.54 deleterious(0.02) possibly_damaging(0.642) TCGA-GF-A2C7-01 16 31384649 31384649 G A ITGAX Missense_Mutation p.G816R 0.34 tolerated(0.46) probably_damaging(0.966) TCGA-GF-A2C7-01 16 31487500 31487500 C T TGFB1I1 Silent p.I294I 0.35 TCGA-GF-A2C7-01 17 11881421 11881421 G A ZNF18 Silent p.F501F 0.29 TCGA-GF-A2C7-01 17 16024512 16024512 G A NCOR1 Missense_Mutation p.P569L 0.38 probably_damaging(0.999) TCGA-GF-A2C7-01 17 17698878 17698878 C G RAI1 Silent p.S872S 0.75 TCGA-GF-A2C7-01 17 26518151 26518168 TGGAAGAGTTTATACCAG - NLK In_Frame_Del p.G448_S453del 0.33 TCGA-GF-A2C7-01 17 32647939 32647939 G A CCL8 3'UTR 0.38 TCGA-GF-A2C7-01 17 36872623 36872623 C T MLLT6 Missense_Mutation p.S347L 0.27 deleterious(0.04) unknown(0) TCGA-GF-A2C7-01 17 42744063 42744063 G T C17orf104 Nonsense_Mutation p.E262* 0.54 TCGA-GF-A2C7-01 17 80044424 80044424 C A FASN Missense_Mutation p.Q1146H 0.08 tolerated(0.09) benign(0.009) TCGA-GF-A2C7-01 18 66564491 66564491 G A CCDC102B Nonsense_Mutation p.W363* 0.33 TCGA-GF-A2C7-01 18 9886764 9886764 C A TXNDC2 Silent p.T96T 0.40 TCGA-GF-A2C7-01 19 16060553 16060553 C T OR10H4 Missense_Mutation p.H246Y 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-GF-A2C7-01 19 36616653 36616653 C T TBCB Missense_Mutation p.P235L 0.31 deleterious(0) probably_damaging(0.96) TCGA-GF-A2C7-01 19 43922417 43922417 G A TEX101 Silent p.R224R 0.43 TCGA-GF-A2C7-01 19 47424434 47424434 A T ARHGAP35 Missense_Mutation p.E834D 0.37 tolerated(0.09) benign(0.033) TCGA-GF-A2C7-01 19 48618851 48618851 A G LIG1 3'UTR 0.50 TCGA-GF-A2C7-01 19 51274504 51274504 G A GPR32 Missense_Mutation p.G216E 0.37 tolerated(0.56) benign(0.034) TCGA-GF-A2C7-01 1 118165657 118165657 G A FAM46C Missense_Mutation p.R56H 0.44 deleterious(0) probably_damaging(0.998) TCGA-GF-A2C7-01 1 12835290 12835290 C T PRAMEF12 Missense_Mutation p.R94C 0.64 tolerated(0.09) possibly_damaging(0.453) TCGA-GF-A2C7-01 1 155736300 155736300 G A GON4L Silent p.F988F 0.41 TCGA-GF-A2C7-01 1 157803144 157803144 G A CD5L Missense_Mutation p.P293S 0.27 tolerated(0.26) benign(0.093) TCGA-GF-A2C7-01 1 158368474 158368474 C T OR10T2 Silent p.R261R 0.19 TCGA-GF-A2C7-01 1 16559022 16559022 C T RSG1 Silent p.R170R 0.82 TCGA-GF-A2C7-01 1 184672095 184672095 G A EDEM3 Silent p.L747L 0.35 TCGA-GF-A2C7-01 1 203188818 203188818 C T CHIT1 Missense_Mutation p.E297K 0.27 deleterious(0.03) possibly_damaging(0.474) TCGA-GF-A2C7-01 1 237813241 237813241 C T RYR2 Missense_Mutation p.P2526L 0.29 probably_damaging(1) TCGA-GF-A2C7-01 1 43042868 43042868 G A CCDC30 Missense_Mutation p.E345K 0.38 deleterious(0) probably_damaging(0.999) TCGA-GF-A2C7-01 20 43058391 43058391 G A HNF4A 3'UTR 0.32 TCGA-GF-A2C7-01 20 44187499 44187499 G T WFDC8 Missense_Mutation p.P90H 0.58 deleterious(0) probably_damaging(0.999) TCGA-GF-A2C7-01 20 44485829 44485829 G A ACOT8 Silent p.F42F 0.25 TCGA-GF-A2C7-01 20 61941745 61941745 G A COL20A1 Missense_Mutation p.G426R 0.23 deleterious(0) probably_damaging(0.995) TCGA-GF-A2C7-01 20 62236122 62236122 G A GMEB2 Missense_Mutation p.S68F 0.25 tolerated(0.07) possibly_damaging(0.779) TCGA-GF-A2C7-01 20 62407266 62407266 C T ZBTB46 Silent p.E329E 0.53 TCGA-GF-A2C7-01 20 62576048 62576048 T A UCKL1 Missense_Mutation p.I232F 0.50 deleterious(0) probably_damaging(0.965) TCGA-GF-A2C7-01 21 27071173 27071173 T C JAM2 Silent p.N193N 0.33 TCGA-GF-A2C7-01 22 25011077 25011077 C T GGT1 Missense_Mutation p.S122L 0.44 tolerated(0.08) benign(0.06) TCGA-GF-A2C7-01 22 39387387 39387387 C T APOBEC3B Silent p.F258F 0.28 TCGA-GF-A2C7-01 2 107040225 107040225 C T RGPD3 Missense_Mutation p.D1400N 0.35 deleterious(0) probably_damaging(0.999) TCGA-GF-A2C7-01 2 119752093 119752093 C T MARCO Silent p.V520V 0.46 TCGA-GF-A2C7-01 2 168105430 168105430 C T XIRP2 Missense_Mutation p.P2510S 0.44 benign(0.069) TCGA-GF-A2C7-01 2 180308110 180308110 G A ZNF385B Missense_Mutation p.S428F 0.34 deleterious(0.01) benign(0.218) TCGA-GF-A2C7-01 2 18112675 18112675 G A KCNS3 Missense_Mutation p.D134N 0.36 tolerated(0.2) benign(0.001) TCGA-GF-A2C7-01 2 217363595 217363595 G T RPL37A 5'UTR 0.27 TCGA-GF-A2C7-01 2 231407711 231407711 T G SP100 3'UTR 0.50 TCGA-GF-A2C7-01 2 74763971 74763971 G A LOXL3 Silent p.S259S 0.34 TCGA-GF-A2C7-01 2 89156800 89156800 G A IGKC 3'UTR 0.47 TCGA-GF-A2C7-01 3 172834933 172834933 C T SPATA16 Missense_Mutation p.G197R 0.34 tolerated(0.08) probably_damaging(0.979) TCGA-GF-A2C7-01 3 182870284 182870284 G A LAMP3 Missense_Mutation p.S256L 0.41 deleterious(0.01) benign(0.211) TCGA-GF-A2C7-01 3 38035430 38035431 - T VILL Frame_Shift_Ins p.E37* 0.32 TCGA-GF-A2C7-01 3 38768522 38768522 G A SCN10A Silent p.L888L 0.51 TCGA-GF-A2C7-01 3 51450468 51450468 G A VPRBP Silent p.D934D 0.38 TCGA-GF-A2C7-01 3 9757023 9757023 C - CPNE9 Frame_Shift_Del p.Q249Rfs*27 0.24 TCGA-GF-A2C7-01 4 126373002 126373002 C T FAT4 Missense_Mutation p.P3611S 0.40 probably_damaging(0.998) TCGA-GF-A2C7-01 4 70361257 70361257 T C UGT2B4 Missense_Mutation p.Y108C 0.42 deleterious(0.02) benign(0.121) TCGA-GF-A2C7-01 5 139940274 139940274 G A APBB3 Missense_Mutation p.P335S 0.45 tolerated(0.09) probably_damaging(0.998) TCGA-GF-A2C7-01 5 140431171 140431171 T A PCDHB1 Missense_Mutation p.M39K 0.43 tolerated(0.33) probably_damaging(0.989) TCGA-GF-A2C7-01 5 140603189 140603189 G A PCDHB14 Missense_Mutation p.E38K 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A2C7-01 5 167896026 167896026 C T WWC1 3'UTR 0.36 TCGA-GF-A2C7-01 5 5457825 5457825 C T KIAA0947 Missense_Mutation p.P358S 0.39 tolerated(0.22) benign(0.062) TCGA-GF-A2C7-01 6 135254135 135254135 T C ALDH8A1 Missense_Mutation p.T210A 0.43 tolerated(0.5) benign(0.012) TCGA-GF-A2C7-01 6 165706950 165706950 C T C6orf118 Missense_Mutation p.E358K 0.24 tolerated(0.07) probably_damaging(0.965) TCGA-GF-A2C7-01 6 31928048 31928048 C T SKIV2L Silent p.A96A 0.19 TCGA-GF-A2C7-01 6 31928049 31928049 C T SKIV2L Missense_Mutation p.P97S 0.18 deleterious(0.04) possibly_damaging(0.758) TCGA-GF-A2C7-01 6 32945938 32945938 C T BRD2 Silent p.S538S 0.30 TCGA-GF-A2C7-01 6 41126821 41126821 G A TREM2 Intron 0.41 TCGA-GF-A2C7-01 7 100693870 100693870 C T MUC17 Silent p.I4276I 0.69 TCGA-GF-A2C7-01 7 140035085 140035085 G A SLC37A3 3'UTR 0.70 TCGA-GF-A2C7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.67 deleterious(0) probably_damaging(0.967) TCGA-GF-A2C7-01 7 150417222 150417222 G T GIMAP1 Missense_Mutation p.G44W 0.25 deleterious(0) probably_damaging(1) TCGA-GF-A2C7-01 7 78150951 78150951 C T MAGI2 Missense_Mutation p.G184S 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A2C7-01 7 92764709 92764709 G A SAMD9L Silent p.L192L 0.16 TCGA-GF-A2C7-01 8 144550575 144550575 G A ZC3H3 Silent p.P694P 0.24 TCGA-GF-A2C7-01 8 144550576 144550576 G A ZC3H3 Missense_Mutation p.P694L 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A2C7-01 8 2823399 2823399 T C CSMD1 Missense_Mutation p.S3060G 0.11 benign(0.138) TCGA-GF-A2C7-01 9 72879317 72879317 C T SMC5 Missense_Mutation p.L95F 0.32 deleterious(0) probably_damaging(1) TCGA-GF-A2C7-01 9 75524517 75524517 C T ALDH1A1 Splice_Site p.X453_splice 0.38 TCGA-GF-A2C7-01 9 990578 990578 G A DMRT3 Missense_Mutation p.G331E 0.84 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GF-A2C7-01 X 137793186 137793186 C T FGF13 Intron 0.95 TCGA-GF-A2C7-01 X 47315704 47315704 T C ZNF41 Missense_Mutation p.T56A 0.74 deleterious(0.01) benign(0.082) TCGA-GF-A2C7-01 X 99887504 99887504 G A TSPAN6 Missense_Mutation p.S216F 0.92 deleterious(0) possibly_damaging(0.82) TCGA-GF-A3OT-06 10 101162412 101162412 C T GOT1 Missense_Mutation p.E343K 0.29 tolerated(0.28) benign(0.008) TCGA-GF-A3OT-06 10 101166509 101166509 G A GOT1 Missense_Mutation p.P133L 0.22 tolerated(0.31) possibly_damaging(0.892) TCGA-GF-A3OT-06 10 101557015 101557015 C T ABCC2 Missense_Mutation p.S265F 0.19 tolerated(0.41) benign(0.379) TCGA-GF-A3OT-06 10 101557016 101557016 C T ABCC2 Silent p.S265S 0.20 TCGA-GF-A3OT-06 10 102059467 102059467 C T PKD2L1 Missense_Mutation p.G120R 0.20 deleterious(0.01) possibly_damaging(0.752) TCGA-GF-A3OT-06 10 102822604 102822604 C T KAZALD1 Silent p.L85L 0.23 TCGA-GF-A3OT-06 10 103340153 103340153 G A POLL Silent p.A405A 0.18 TCGA-GF-A3OT-06 10 103370984 103370984 C T FBXW4 3'UTR 0.22 TCGA-GF-A3OT-06 10 103901026 103901026 C T PPRC1 Missense_Mutation p.P921S 0.17 deleterious_low_confidence(0.02) benign(0.015) TCGA-GF-A3OT-06 10 124380618 124380618 G A DMBT1 Missense_Mutation p.R1648K 0.26 deleterious(0.04) possibly_damaging(0.773) TCGA-GF-A3OT-06 10 132891396 132891396 C T TCERG1L 3'UTR 0.23 TCGA-GF-A3OT-06 10 135184102 135184102 C T ECHS1 Missense_Mutation p.G83E 0.32 deleterious(0) probably_damaging(0.995) TCGA-GF-A3OT-06 10 15115107 15115107 G A OLAH Missense_Mutation p.G279E 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 10 15255812 15255812 C T FAM171A1 Missense_Mutation p.G592E 0.26 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 10 44052942 44052942 G A ZNF239 Missense_Mutation p.P196S 0.15 tolerated(0.41) possibly_damaging(0.8) TCGA-GF-A3OT-06 10 46998916 46998916 A C GPRIN2 Silent p.A12A 0.10 TCGA-GF-A3OT-06 10 52610484 52610484 C T A1CF Missense_Mutation p.G22S 0.16 tolerated(0.87) benign(0) TCGA-GF-A3OT-06 10 54050045 54050045 C T PRKG1 Missense_Mutation p.P653S 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-GF-A3OT-06 10 61011251 61011251 C T FAM13C Intron 0.21 TCGA-GF-A3OT-06 10 61831691 61831691 G A ANK3 Missense_Mutation p.S2983L 0.24 benign(0.007) TCGA-GF-A3OT-06 10 61847989 61847989 T C ANK3 Silent p.G1152G 0.17 TCGA-GF-A3OT-06 10 62645964 62645964 C T RHOBTB1 Missense_Mutation p.G494E 0.34 deleterious(0) probably_damaging(0.965) TCGA-GF-A3OT-06 10 68940116 68940116 G A CTNNA3 Missense_Mutation p.R336C 0.26 deleterious(0) possibly_damaging(0.898) TCGA-GF-A3OT-06 10 74700940 74700940 G A PLA2G12B Silent p.V151V 0.23 TCGA-GF-A3OT-06 10 81680768 81680768 G A MBL1P RNA 0.29 TCGA-GF-A3OT-06 10 88950468 88950468 C T FAM35A 3'UTR 0.29 TCGA-GF-A3OT-06 10 90528662 90528662 C T LIPN Silent p.L217L 0.18 TCGA-GF-A3OT-06 10 95372700 95372700 G A PDE6C Missense_Mutation p.G73E 0.20 tolerated(0.17) benign(0.001) TCGA-GF-A3OT-06 10 95792002 95792002 G A PLCE1 Nonsense_Mutation p.W400* 0.24 TCGA-GF-A3OT-06 10 96748601 96748601 C T CYP2C9 Intron 0.24 TCGA-GF-A3OT-06 10 96971721 96971721 G A C10orf129 Missense_Mutation p.G281E 0.23 tolerated(1) probably_damaging(0.999) TCGA-GF-A3OT-06 10 97605259 97605259 G A ENTPD1 Missense_Mutation p.R252H 0.19 deleterious(0.04) benign(0.368) TCGA-GF-A3OT-06 10 98388206 98388206 C T PIK3AP1 Missense_Mutation p.D474N 0.22 deleterious(0.01) possibly_damaging(0.705) TCGA-GF-A3OT-06 11 100933480 100933480 C T PGR Missense_Mutation p.R637Q 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-GF-A3OT-06 11 103070049 103070049 G A DYNC2H1 Silent p.L2644L 0.23 TCGA-GF-A3OT-06 11 10590080 10590080 C T LYVE1 5'UTR 0.15 TCGA-GF-A3OT-06 11 1083140 1083140 C T MUC2 Silent p.S680S 0.23 TCGA-GF-A3OT-06 11 113675607 113675607 A T USP28 Missense_Mutation p.N854K 0.22 deleterious(0) probably_damaging(0.995) TCGA-GF-A3OT-06 11 114276477 114276477 C T RBM7 Nonsense_Mutation p.Q132* 0.14 TCGA-GF-A3OT-06 11 117303079 117303079 C T DSCAML1 Missense_Mutation p.R1783Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-GF-A3OT-06 11 118130816 118130816 C T MPZL2 Silent p.R179R 0.22 TCGA-GF-A3OT-06 11 120989063 120989063 C T TECTA Missense_Mutation p.T280I 0.16 deleterious(0.01) benign(0.197) TCGA-GF-A3OT-06 11 120998980 120998980 G A TECTA Nonsense_Mutation p.W765* 0.26 TCGA-GF-A3OT-06 11 121477623 121477623 G T SORL1 Missense_Mutation p.W1673L 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 11 123886368 123886368 C T OR10G4 Silent p.F29F 0.30 TCGA-GF-A3OT-06 11 124266338 124266338 G A OR8B3 Silent p.L304L 0.20 TCGA-GF-A3OT-06 11 1271501 1271501 G A MUC5B Missense_Mutation p.G4464E 0.19 benign(0.042) TCGA-GF-A3OT-06 11 130013326 130013326 G A APLP2 Missense_Mutation p.E759K 0.25 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 11 130108498 130108498 C T ZBTB44 Missense_Mutation p.E370K 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-GF-A3OT-06 11 134047120 134047120 G A NCAPD3 Silent p.L1005L 0.27 TCGA-GF-A3OT-06 11 2356726 2356726 A C CD81-AS1 Intron 0.15 TCGA-GF-A3OT-06 11 31816322 31816322 G T PAX6 Missense_Mutation p.Q194K 0.17 tolerated(0.89) benign(0.001) TCGA-GF-A3OT-06 11 36615273 36615273 C T RAG2 Missense_Mutation p.G149E 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 11 489424 489424 C T PTDSS2 Silent p.F293F 0.20 TCGA-GF-A3OT-06 11 49598250 49598250 C T RP11-707M1.1 RNA 0.16 TCGA-GF-A3OT-06 11 51411750 51411750 C T OR4A5 Missense_Mutation p.G216R 0.22 deleterious_low_confidence(0.02) benign(0.424) TCGA-GF-A3OT-06 11 5221451 5221451 C T OR51V1 Silent p.R160R 0.18 TCGA-GF-A3OT-06 11 5537407 5537407 C T UBQLNL Missense_Mutation p.G89S 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 11 5537408 5537408 C T UBQLNL Silent p.R88R 0.09 TCGA-GF-A3OT-06 11 55433330 55433330 G A OR4C6 Missense_Mutation p.G230R 0.17 deleterious_low_confidence(0) benign(0.211) TCGA-GF-A3OT-06 11 55541282 55541282 C T OR5D13 Silent p.D123D 0.18 TCGA-GF-A3OT-06 11 55587703 55587703 C T OR5D18 Silent p.L200L 0.20 TCGA-GF-A3OT-06 11 55798326 55798326 C T OR5AS1 Silent p.F144F 0.21 TCGA-GF-A3OT-06 11 58347022 58347022 G A ZFP91 Missense_Mutation p.D90N 0.33 deleterious_low_confidence(0.03) probably_damaging(0.959) TCGA-GF-A3OT-06 11 5905798 5905798 A G OR52E4 Silent p.Q92Q 0.20 TCGA-GF-A3OT-06 11 60696363 60696363 G A TMEM132A Missense_Mutation p.R266Q 0.18 deleterious(0.04) benign(0.086) TCGA-GF-A3OT-06 11 61553639 61553639 C T MYRF 3'UTR 0.41 TCGA-GF-A3OT-06 11 619080 619080 C T CDHR5 Silent p.T493T 0.27 TCGA-GF-A3OT-06 11 62381081 62381081 G A ROM1 Missense_Mutation p.G110S 0.34 tolerated(0.11) possibly_damaging(0.763) TCGA-GF-A3OT-06 11 66254125 66254125 C T DPP3 Nonsense_Mutation p.R159* 0.25 TCGA-GF-A3OT-06 11 6867026 6867026 T C OR10A5 Missense_Mutation p.V38A 0.26 tolerated(0.09) benign(0.004) TCGA-GF-A3OT-06 11 71152365 71152365 G A DHCR7 Silent p.I178I 0.23 TCGA-GF-A3OT-06 11 71948210 71948210 C T INPPL1 Silent p.A974A 0.24 TCGA-GF-A3OT-06 11 73620448 73620448 C T PAAF1 Silent p.I179I 0.25 TCGA-GF-A3OT-06 11 73941314 73941314 C T PPME1 Silent p.A141A 0.18 TCGA-GF-A3OT-06 11 75508220 75508220 C T DGAT2 Missense_Mutation p.R218W 0.18 deleterious(0.03) probably_damaging(0.969) TCGA-GF-A3OT-06 11 77451873 77451873 G A RSF1 Missense_Mutation p.L161F 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-GF-A3OT-06 11 89885593 89885593 G A NAALAD2 Missense_Mutation p.G246E 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 11 92086801 92086801 C T FAT3 Missense_Mutation p.T508I 0.21 probably_damaging(0.996) TCGA-GF-A3OT-06 11 92534542 92534542 C T FAT3 Missense_Mutation p.P2788L 0.20 benign(0.028) TCGA-GF-A3OT-06 11 94322335 94322335 G A PIWIL4 Silent p.K321K 0.21 TCGA-GF-A3OT-06 12 102056192 102056192 G A MYBPC1 Missense_Mutation p.D672N 0.12 deleterious(0) possibly_damaging(0.477) TCGA-GF-A3OT-06 12 10312595 10312595 G A OLR1 Nonsense_Mutation p.Q236* 0.20 TCGA-GF-A3OT-06 12 104126850 104126850 G A STAB2 Missense_Mutation p.D1784N 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A3OT-06 12 109536377 109536378 - GT UNG Frame_Shift_Ins p.G93Wfs*23 0.16 TCGA-GF-A3OT-06 12 112578685 112578685 C T TRAFD1 Silent p.L100L 0.24 TCGA-GF-A3OT-06 12 112654696 112654696 G A HECTD4 Silent p.I2276I 0.20 TCGA-GF-A3OT-06 12 112846061 112846061 C T RPL6 Missense_Mutation p.V107I 0.15 deleterious(0.04) benign(0.049) TCGA-GF-A3OT-06 12 112846062 112846062 C T RPL6 Silent p.V106V 0.15 TCGA-GF-A3OT-06 12 118198896 118198896 G A KSR2 Silent p.I302I 0.18 TCGA-GF-A3OT-06 12 118198921 118198921 G A KSR2 Missense_Mutation p.S294F 0.17 deleterious(0.02) benign(0.26) TCGA-GF-A3OT-06 12 120600896 120600896 G A GCN1L1 Silent p.I672I 0.22 TCGA-GF-A3OT-06 12 120791151 120791151 G A MSI1 Silent p.A228A 0.22 TCGA-GF-A3OT-06 12 121712076 121712076 G A CAMKK2 Missense_Mutation p.T85I 0.29 tolerated_low_confidence(0.15) benign(0.01) TCGA-GF-A3OT-06 12 122691281 122691281 G T B3GNT4 Silent p.V161V 0.29 TCGA-GF-A3OT-06 12 13906821 13906821 C T GRIN2B Missense_Mutation p.G147D 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 12 15734639 15734639 C T PTPRO Silent p.F1053F 0.19 TCGA-GF-A3OT-06 12 16713473 16713473 C T LMO3 Splice_Site p.X91_splice 0.23 TCGA-GF-A3OT-06 12 18234310 18234310 T A RERGL Missense_Mutation p.N145Y 0.20 tolerated(1) benign(0.004) TCGA-GF-A3OT-06 12 21712622 21712622 C T GYS2 Missense_Mutation p.E398K 0.21 tolerated(0.52) probably_damaging(0.998) TCGA-GF-A3OT-06 12 21713332 21713332 C T GYS2 Missense_Mutation p.R386Q 0.23 tolerated(0.29) probably_damaging(0.999) TCGA-GF-A3OT-06 12 2778120 2778127 CCTCTGAA - CACNA1C Frame_Shift_Del p.P1597Qfs*32 0.20 TCGA-GF-A3OT-06 12 304399 304399 C T SLC6A12 Nonsense_Mutation p.W474* 0.23 TCGA-GF-A3OT-06 12 48723737 48723737 G A H1FNT Silent p.V221V 0.30 TCGA-GF-A3OT-06 12 49061521 49061521 G A KANSL2 Missense_Mutation p.R310C 0.16 deleterious(0) probably_damaging(0.912) TCGA-GF-A3OT-06 12 4919558 4919558 C T KCNA6 Silent p.F117F 0.25 TCGA-GF-A3OT-06 12 49418438 49418438 G A KMT2D Silent p.P5325P 0.33 TCGA-GF-A3OT-06 12 53002027 53002027 C T KRT73 Missense_Mutation p.G526R 0.23 deleterious_low_confidence(0.03) benign(0.323) TCGA-GF-A3OT-06 12 53005026 53005026 G A KRT73 Nonsense_Mutation p.Q358* 0.18 TCGA-GF-A3OT-06 12 54107625 54107625 G A CALCOCO1 Missense_Mutation p.P551S 0.25 tolerated(0.27) benign(0.002) TCGA-GF-A3OT-06 12 54427267 54427267 G T HOXC5 Nonsense_Mutation p.E121* 0.23 TCGA-GF-A3OT-06 12 5603549 5603549 G A NTF3 Missense_Mutation p.E70K 0.21 tolerated(0.7) benign(0.01) TCGA-GF-A3OT-06 12 56481944 56481944 C T ERBB3 Missense_Mutation p.P291L 0.26 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 12 57114739 57114739 G A NACA Missense_Mutation p.P192L 0.18 deleterious_low_confidence(0) benign(0) TCGA-GF-A3OT-06 12 58121520 58121520 A T AGAP2 Missense_Mutation p.I934N 0.10 deleterious(0) probably_damaging(0.952) TCGA-GF-A3OT-06 12 6153610 6153610 C A VWF Missense_Mutation p.R763S 0.19 deleterious(0) possibly_damaging(0.775) TCGA-GF-A3OT-06 12 6421437 6421437 C T PLEKHG6 Silent p.L15L 0.21 TCGA-GF-A3OT-06 12 70048755 70048755 C T BEST3 Missense_Mutation p.E647K 0.16 tolerated_low_confidence(0.1) benign(0.073) TCGA-GF-A3OT-06 12 7463275 7463275 C T ACSM4 Missense_Mutation p.L185F 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-GF-A3OT-06 12 79837979 79837979 A C SYT1 Missense_Mutation p.Q352P 0.19 deleterious(0) probably_damaging(0.982) TCGA-GF-A3OT-06 12 82796832 82796832 A G METTL25 Missense_Mutation p.N401S 0.20 deleterious(0.01) benign(0.122) TCGA-GF-A3OT-06 13 20006621 20006621 G A TPTE2 Missense_Mutation p.S405L 0.13 deleterious(0.03) possibly_damaging(0.842) TCGA-GF-A3OT-06 13 23915199 23915199 G A SACS Missense_Mutation p.S939F 0.18 benign(0.444) TCGA-GF-A3OT-06 13 25275033 25275033 C T ATP12A Silent p.V624V 0.21 TCGA-GF-A3OT-06 13 25433138 25433138 G A RNF17 Splice_Site p.X1204_splice 0.29 TCGA-GF-A3OT-06 13 25486139 25486139 G A CENPJ Silent p.L171L 0.21 TCGA-GF-A3OT-06 13 33716453 33716453 C T STARD13 Silent p.R127R 0.17 TCGA-GF-A3OT-06 13 39544522 39544522 G A STOML3 Missense_Mutation p.L106F 0.25 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 13 42277461 42277461 T C VWA8 Missense_Mutation p.E1068G 0.15 deleterious(0.02) benign(0.424) TCGA-GF-A3OT-06 13 86370073 86370073 G A SLITRK6 Missense_Mutation p.R191C 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 13 98655019 98655019 C T IPO5 Missense_Mutation p.H457Y 0.24 deleterious(0) possibly_damaging(0.825) TCGA-GF-A3OT-06 13 99358483 99358483 C T SLC15A1 Missense_Mutation p.G392R 0.26 tolerated(0.06) benign(0.014) TCGA-GF-A3OT-06 14 103412809 103412809 G A CDC42BPB Silent p.I1248I 0.14 TCGA-GF-A3OT-06 14 104570792 104570792 G A ASPG Missense_Mutation p.G302E 0.19 deleterious(0) probably_damaging(0.976) TCGA-GF-A3OT-06 14 106471667 106471667 C T IGHV1-3 Nonsense_Mutation p.W5* 0.13 TCGA-GF-A3OT-06 14 21555550 21555550 C T ARHGEF40 Missense_Mutation p.P1439S 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GF-A3OT-06 14 21555551 21555551 C T ARHGEF40 Missense_Mutation p.P1439L 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GF-A3OT-06 14 21871732 21871732 C T CHD8 Missense_Mutation p.G1133D 0.12 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 14 22409795 22409795 G A TRAV9-2 Silent p.E95E 0.19 TCGA-GF-A3OT-06 14 22554979 22554979 T A TRAV23DV6 Missense_Mutation p.S35R 0.24 tolerated(0.41) possibly_damaging(0.885) TCGA-GF-A3OT-06 14 22564750 22564750 C T TRDV1 Silent p.F67F 0.26 TCGA-GF-A3OT-06 14 22573960 22573960 G C TRAV24 Missense_Mutation p.W60C 0.16 tolerated(0.13) probably_damaging(0.932) TCGA-GF-A3OT-06 14 22670506 22670506 C T TRAV26-2 Silent p.L10L 0.23 TCGA-GF-A3OT-06 14 22671075 22671075 C T TRAV26-2 Missense_Mutation p.T47I 0.17 deleterious(0.01) benign(0.029) TCGA-GF-A3OT-06 14 22671117 22671117 C T TRAV26-2 Missense_Mutation p.P61L 0.22 deleterious(0.05) probably_damaging(0.96) TCGA-GF-A3OT-06 14 23588291 23588291 C T CEBPE Missense_Mutation p.G4R 0.40 deleterious(0.02) benign(0.16) TCGA-GF-A3OT-06 14 23817418 23817418 G A SLC22A17 Missense_Mutation p.R264W 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-GF-A3OT-06 14 23817419 23817419 G A SLC22A17 Silent p.N263N 0.20 TCGA-GF-A3OT-06 14 23874460 23874460 G A MYH6 Silent p.S158S 0.32 TCGA-GF-A3OT-06 14 24034940 24034940 G A AP1G2 Intron 0.24 TCGA-GF-A3OT-06 14 24034941 24034941 T A AP1G2 Intron 0.27 TCGA-GF-A3OT-06 14 24845892 24845892 C T NFATC4 Missense_Mutation p.P880S 0.19 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-GF-A3OT-06 14 26917263 26917263 C T NOVA1 Missense_Mutation p.G476R 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 14 51706962 51706962 G A TMX1 5'UTR 0.23 TCGA-GF-A3OT-06 14 55448271 55448271 G A WDHD1 Missense_Mutation p.P684S 0.23 tolerated(0.05) benign(0.054) TCGA-GF-A3OT-06 14 62551076 62551076 C T SYT16 Nonsense_Mutation p.R533* 0.17 TCGA-GF-A3OT-06 14 65009365 65009365 A G HSPA2 Missense_Mutation p.K600E 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.812) TCGA-GF-A3OT-06 14 71444685 71444685 C T PCNX Missense_Mutation p.P544L 0.22 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-GF-A3OT-06 14 88652371 88652371 C T KCNK10 Missense_Mutation p.M380I 0.20 deleterious(0.01) benign(0.276) TCGA-GF-A3OT-06 14 88789157 88789157 G A KCNK10 5'UTR 0.29 TCGA-GF-A3OT-06 14 91760643 91760643 C T CCDC88C Missense_Mutation p.G1329E 0.23 deleterious(0) possibly_damaging(0.887) TCGA-GF-A3OT-06 14 93943986 93943986 G A UNC79 5'UTR 0.15 TCGA-GF-A3OT-06 14 94139696 94139696 G A UNC79 Splice_Site p.X2075_splice 0.30 TCGA-GF-A3OT-06 14 94964180 94964180 G A SERPINA12 Silent p.T185T 0.26 TCGA-GF-A3OT-06 14 95579448 95579448 G A DICER1 Missense_Mutation p.P674L 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-GF-A3OT-06 15 101593579 101593579 C T LRRK1 Silent p.L1336L 0.09 TCGA-GF-A3OT-06 15 20490539 20490539 C T CHEK2P2 RNA 0.07 TCGA-GF-A3OT-06 15 22473225 22473225 C T IGHV4OR15-8 Splice_Site p.X16_splice 0.05 TCGA-GF-A3OT-06 15 25219528 25219528 C T SNRPN 5'UTR 0.32 TCGA-GF-A3OT-06 15 27128374 27128374 G A GABRA5 Silent p.T90T 0.23 TCGA-GF-A3OT-06 15 34649228 34649228 A G NUTM1 Missense_Mutation p.T979A 0.34 tolerated(0.24) benign(0.012) TCGA-GF-A3OT-06 15 39879565 39879565 G A THBS1 Missense_Mutation p.D380N 0.35 deleterious(0.01) benign(0.349) TCGA-GF-A3OT-06 15 39880262 39880262 G A THBS1 Nonsense_Mutation p.W438* 0.19 TCGA-GF-A3OT-06 15 40599815 40599815 C T PLCB2 Missense_Mutation p.G20E 0.23 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 15 40710482 40710482 C T IVD 3'UTR 0.22 TCGA-GF-A3OT-06 15 40913497 40913497 T G CASC5 Missense_Mutation p.N371K 0.23 deleterious(0.01) possibly_damaging(0.485) TCGA-GF-A3OT-06 15 42035012 42035012 T A MGA Silent p.I1618I 0.20 TCGA-GF-A3OT-06 15 42172063 42172063 C T SPTBN5 Splice_Site p.X938_splice 0.29 TCGA-GF-A3OT-06 15 45050851 45050851 C T TRIM69 Silent p.S204S 0.26 TCGA-GF-A3OT-06 15 45724290 45724290 C T C15orf48 Missense_Mutation p.P48L 0.11 tolerated(0.07) benign(0.01) TCGA-GF-A3OT-06 15 51839578 51839578 G A DMXL2 Missense_Mutation p.P199S 0.14 tolerated(0.68) benign(0.008) TCGA-GF-A3OT-06 15 52356225 52356225 C T MAPK6 Silent p.P398P 0.27 TCGA-GF-A3OT-06 15 52356226 52356226 C T MAPK6 Nonsense_Mutation p.R399* 0.28 TCGA-GF-A3OT-06 15 56681579 56681579 G A TEX9 Missense_Mutation p.G126R 0.16 deleterious(0.04) possibly_damaging(0.807) TCGA-GF-A3OT-06 15 63618462 63618462 G A CA12 3'UTR 0.25 TCGA-GF-A3OT-06 15 63618464 63618464 G A CA12 3'UTR 0.23 TCGA-GF-A3OT-06 15 65877212 65877212 G A VWA9 Missense_Mutation p.P322S 0.24 tolerated(0.07) possibly_damaging(0.49) TCGA-GF-A3OT-06 15 66180222 66180222 C T RAB11A 3'UTR 0.33 TCGA-GF-A3OT-06 15 72690748 72690748 G A TMEM202 Silent p.R27R 0.25 TCGA-GF-A3OT-06 15 76430089 76430089 C T C15orf27 Missense_Mutation p.S27F 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GF-A3OT-06 15 79058878 79058878 C A ADAMTS7 Silent p.L1125L 0.19 TCGA-GF-A3OT-06 15 79312443 79312443 C T RASGRF1 Missense_Mutation p.G516R 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-GF-A3OT-06 15 79614547 79614547 C T TMED3 Silent p.V215V 0.16 TCGA-GF-A3OT-06 15 85666319 85666319 G T PDE8A Silent p.G660G 0.17 TCGA-GF-A3OT-06 15 88472554 88472554 C T NTRK3 Missense_Mutation p.M667I 0.20 deleterious(0.04) probably_damaging(0.949) TCGA-GF-A3OT-06 15 88678329 88678329 C T NTRK3 Intron 0.21 TCGA-GF-A3OT-06 15 89392937 89392937 C T ACAN Silent p.S667S 0.18 TCGA-GF-A3OT-06 15 90167737 90167737 A C TICRR Missense_Mutation p.Q1399P 0.23 tolerated(0.11) benign(0.009) TCGA-GF-A3OT-06 15 91769606 91769606 G A SV2B Missense_Mutation p.G38D 0.17 deleterious(0) probably_damaging(0.991) TCGA-GF-A3OT-06 16 10274089 10274089 C T GRIN2A Silent p.A60A 0.21 TCGA-GF-A3OT-06 16 10551263 10551263 A G ATF7IP2 Missense_Mutation p.N410S 0.27 tolerated(0.13) benign(0.037) TCGA-GF-A3OT-06 16 12061681 12061681 G A TNFRSF17 Missense_Mutation p.E178K 0.23 deleterious(0.02) possibly_damaging(0.612) TCGA-GF-A3OT-06 16 19883616 19883616 G A GPRC5B Silent p.T184T 0.13 TCGA-GF-A3OT-06 16 21065751 21065751 G A DNAH3 Silent p.I1343I 0.28 TCGA-GF-A3OT-06 16 21073827 21073827 C T DNAH3 Silent p.Q1232Q 0.23 TCGA-GF-A3OT-06 16 21213314 21213314 C T ZP2 Missense_Mutation p.E440K 0.21 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 16 2127662 2127662 G A TSC2 Silent p.K967K 0.28 TCGA-GF-A3OT-06 16 2162790 2162790 G A PKD1 Silent p.L1054L 0.19 TCGA-GF-A3OT-06 16 23226893 23226893 C T SCNN1G 3'UTR 0.33 TCGA-GF-A3OT-06 16 2378471 2378471 G A ABCA3 5'UTR 0.33 TCGA-GF-A3OT-06 16 24105562 24105562 C T PRKCB Silent p.F255F 0.20 TCGA-GF-A3OT-06 16 24578724 24578724 C T RBBP6 Missense_Mutation p.S617L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-GF-A3OT-06 16 27506677 27506677 C T GTF3C1 Silent p.R829R 0.18 TCGA-GF-A3OT-06 16 2813624 2813624 C T SRRM2 Missense_Mutation p.S1032F 0.24 unknown(0) TCGA-GF-A3OT-06 16 30740291 30740291 C T SRCAP Missense_Mutation p.S1888F 0.14 possibly_damaging(0.732) TCGA-GF-A3OT-06 16 30740292 30740292 C T SRCAP Silent p.S1888S 0.14 TCGA-GF-A3OT-06 16 31091182 31091182 G A ZNF646 Silent p.G1179G 0.12 TCGA-GF-A3OT-06 16 31497517 31497517 C T SLC5A2 Silent p.F165F 0.19 TCGA-GF-A3OT-06 16 3293320 3293320 C T MEFV Missense_Mutation p.D723N 0.23 deleterious(0.04) probably_damaging(0.945) TCGA-GF-A3OT-06 16 56875705 56875705 C T NUP93 Missense_Mutation p.S770L 0.17 tolerated(0.3) benign(0.004) TCGA-GF-A3OT-06 16 67038069 67038069 C T CES4A Missense_Mutation p.S341L 0.23 tolerated(0.06) benign(0.001) TCGA-GF-A3OT-06 16 71602113 71602113 C T TAT Silent p.R433R 0.21 TCGA-GF-A3OT-06 16 71602114 71602114 C T TAT Missense_Mutation p.R433Q 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 16 72055184 72055184 G A DHODH Missense_Mutation p.A227T 0.17 tolerated(0.25) benign(0.001) TCGA-GF-A3OT-06 16 72132628 72132628 C T DHX38 Missense_Mutation p.S234F 0.16 deleterious(0) possibly_damaging(0.474) TCGA-GF-A3OT-06 16 7382859 7382859 C T RBFOX1 5'UTR 0.25 TCGA-GF-A3OT-06 16 78056532 78056532 G A CLEC3A Silent p.K12K 0.22 TCGA-GF-A3OT-06 16 8839939 8839939 C T ABAT Missense_Mutation p.P51L 0.25 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 16 8994415 8994415 T A USP7 Missense_Mutation p.M761L 0.10 tolerated(0.34) benign(0.009) TCGA-GF-A3OT-06 16 9857492 9857492 G A GRIN2A Silent p.D1303D 0.26 TCGA-GF-A3OT-06 17 10295939 10295939 C T MYH8 Missense_Mutation p.E1830K 0.21 deleterious(0.02) possibly_damaging(0.582) TCGA-GF-A3OT-06 17 10348126 10348126 C T MYH4 Missense_Mutation p.E1853K 0.21 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 17 10443321 10443321 C T MYH2 Silent p.G357G 0.23 TCGA-GF-A3OT-06 17 12896253 12896253 C T ELAC2 Missense_Mutation p.R788Q 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-GF-A3OT-06 17 1438746 1438746 G A PITPNA Missense_Mutation p.P175S 0.16 tolerated(0.14) benign(0.346) TCGA-GF-A3OT-06 17 1552937 1552937 C T RILP Silent p.L54L 0.20 TCGA-GF-A3OT-06 17 16593955 16593955 C T CCDC144A Missense_Mutation p.L81F 0.22 deleterious_low_confidence(0.02) benign(0.047) TCGA-GF-A3OT-06 17 16725522 16725522 G A AC022596.6 RNA 0.26 TCGA-GF-A3OT-06 17 18675954 18675954 C T FBXW10 Missense_Mutation p.P746S 0.22 tolerated(0.79) benign(0.02) TCGA-GF-A3OT-06 17 18874996 18874996 T A FAM83G Silent p.G716G 0.25 TCGA-GF-A3OT-06 17 19470492 19470492 C T SLC47A1 Silent p.G420G 0.21 TCGA-GF-A3OT-06 17 19611819 19611819 C A SLC47A2 Missense_Mutation p.G178V 0.19 deleterious(0.02) benign(0.01) TCGA-GF-A3OT-06 17 20354887 20354887 A C LGALS9B Silent p.A276A 0.17 TCGA-GF-A3OT-06 17 21477534 21477534 G A AC138710.1 5'Flank 0.16 TCGA-GF-A3OT-06 17 26666526 26666526 G A TNFAIP1 5'UTR 0.24 TCGA-GF-A3OT-06 17 26666527 26666527 G A TNFAIP1 5'UTR 0.28 TCGA-GF-A3OT-06 17 3100893 3100893 C T OR1A2 Silent p.F27F 0.25 TCGA-GF-A3OT-06 17 3144330 3144330 G A OR1D4 RNA 0.17 TCGA-GF-A3OT-06 17 33501375 33501375 G A UNC45B Missense_Mutation p.E651K 0.23 deleterious(0) possibly_damaging(0.78) TCGA-GF-A3OT-06 17 36358958 36358958 G A RP11-1407O15.2 Silent p.L245L 0.08 TCGA-GF-A3OT-06 17 37786257 37786257 G A PPP1R1B Silent p.S66S 0.20 TCGA-GF-A3OT-06 17 38078571 38078571 G A ORMDL3 3'UTR 0.24 TCGA-GF-A3OT-06 17 38643619 38643619 G A TNS4 Silent p.S319S 0.26 TCGA-GF-A3OT-06 17 42449740 42449740 C T ITGA2B Missense_Mutation p.G1038R 0.14 tolerated_low_confidence(0.1) benign(0) TCGA-GF-A3OT-06 17 42744143 42744143 C T C17orf104 Silent p.Y288Y 0.23 TCGA-GF-A3OT-06 17 4647081 4647081 C T ZMYND15 Silent p.L439L 0.24 TCGA-GF-A3OT-06 17 4796787 4796787 C T MINK1 Missense_Mutation p.A820V 0.24 tolerated(1) benign(0.041) TCGA-GF-A3OT-06 17 48755183 48755183 G A ABCC3 Missense_Mutation p.E1153K 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 17 48823267 48823267 C T LUC7L3 Missense_Mutation p.R294C 0.29 tolerated(0.19) unknown(0) TCGA-GF-A3OT-06 17 4927425 4927425 G T KIF1C Missense_Mutation p.K1097N 0.23 deleterious_low_confidence(0) benign(0.403) TCGA-GF-A3OT-06 17 49825013 49825013 C T CA10 Missense_Mutation p.G149R 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-GF-A3OT-06 17 5338248 5338248 G A C1QBP Missense_Mutation p.P141L 0.26 deleterious(0) benign(0.263) TCGA-GF-A3OT-06 17 54520229 54520229 C T ANKFN1 Missense_Mutation p.S348L 0.16 deleterious(0.05) possibly_damaging(0.504) TCGA-GF-A3OT-06 17 5485193 5485193 C T NLRP1 Missense_Mutation p.G213E 0.24 tolerated(0.1) benign(0.118) TCGA-GF-A3OT-06 17 62038750 62038750 T G SCN4A Missense_Mutation p.K550Q 0.19 deleterious(0.03) benign(0.367) TCGA-GF-A3OT-06 17 66938086 66938086 G A ABCA8 Silent p.S30S 0.25 TCGA-GF-A3OT-06 17 6943385 6943385 T A SLC16A13 3'UTR 0.38 TCGA-GF-A3OT-06 17 72764831 72764831 G A SLC9A3R1 3'UTR 0.18 TCGA-GF-A3OT-06 17 72954844 72954844 G A HID1 Silent p.F388F 0.33 TCGA-GF-A3OT-06 17 7401454 7401454 C T POLR2A Silent p.I420I 0.25 TCGA-GF-A3OT-06 17 7950012 7950012 C T ALOX15B Silent p.T409T 0.26 TCGA-GF-A3OT-06 17 79650870 79650870 C T ARL16 5'UTR 0.20 TCGA-GF-A3OT-06 17 8168223 8168223 C T PFAS Missense_Mutation p.S687F 0.20 deleterious(0.02) probably_damaging(0.94) TCGA-GF-A3OT-06 18 13621218 13621218 C T LDLRAD4 Missense_Mutation p.S95F 0.16 deleterious(0) probably_damaging(0.997) TCGA-GF-A3OT-06 18 13826736 13826736 G A MC5R Silent p.R324R 0.16 TCGA-GF-A3OT-06 18 14763957 14763957 G A ANKRD30B Missense_Mutation p.E365K 0.13 tolerated(0.75) benign(0.011) TCGA-GF-A3OT-06 18 21484573 21484573 C T LAMA3 Missense_Mutation p.T2177I 0.17 possibly_damaging(0.655) TCGA-GF-A3OT-06 18 21501018 21501018 G A LAMA3 Silent p.S2681S 0.25 TCGA-GF-A3OT-06 18 28966761 28966761 G C DSG4 Silent p.S65S 0.29 TCGA-GF-A3OT-06 18 334970 334970 C T COLEC12 Missense_Mutation p.G530S 0.14 deleterious(0) unknown(0) TCGA-GF-A3OT-06 18 56390483 56390483 G A MALT1 Missense_Mutation p.G408R 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 18 56390484 56390484 G T MALT1 Splice_Site p.X408_splice 0.15 TCGA-GF-A3OT-06 18 57014755 57014755 C T LMAN1 Missense_Mutation p.G271E 0.32 deleterious(0.02) possibly_damaging(0.46) TCGA-GF-A3OT-06 18 64172194 64172194 C T CDH19 Missense_Mutation p.G725E 0.30 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 18 65180387 65180387 C T DSEL Missense_Mutation p.E497K 0.18 deleterious(0) probably_damaging(0.991) TCGA-GF-A3OT-06 18 6956647 6956647 G A LAMA1 Silent p.P2694P 0.18 TCGA-GF-A3OT-06 18 70416259 70416259 C T NETO1 3'UTR 0.20 TCGA-GF-A3OT-06 18 7231617 7231617 G A LRRC30 Missense_Mutation p.D161N 0.15 tolerated(0.39) possibly_damaging(0.728) TCGA-GF-A3OT-06 18 76754779 76754779 G A SALL3 Missense_Mutation p.E930K 0.17 tolerated(0.24) benign(0.277) TCGA-GF-A3OT-06 18 77895176 77895176 C T ADNP2 Missense_Mutation p.P627L 0.19 deleterious(0) benign(0.106) TCGA-GF-A3OT-06 18 9258271 9258271 C T ANKRD12 Missense_Mutation p.P1669L 0.29 deleterious_low_confidence(0.03) benign(0.097) TCGA-GF-A3OT-06 19 10079068 10079068 C T COL5A3 Missense_Mutation p.G1436E 0.22 unknown(0) TCGA-GF-A3OT-06 19 10124162 10124162 G A RDH8 Missense_Mutation p.E17K 0.21 tolerated_low_confidence(0.21) benign(0.016) TCGA-GF-A3OT-06 19 11022910 11022910 C T CARM1 Silent p.A203A 0.22 TCGA-GF-A3OT-06 19 11101966 11101966 C T SMARCA4 Silent p.I462I 0.18 TCGA-GF-A3OT-06 19 11132428 11132428 G A SMARCA4 Missense_Mutation p.E882K 0.40 possibly_damaging(0.692) TCGA-GF-A3OT-06 19 11134267 11134267 G A SMARCA4 Missense_Mutation p.R978Q 0.41 probably_damaging(0.992) TCGA-GF-A3OT-06 19 12090047 12090047 C T ZNF763 3'UTR 0.16 TCGA-GF-A3OT-06 19 12866708 12866708 G A BEST2 Missense_Mutation p.D303N 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-GF-A3OT-06 19 13445223 13445223 G A CACNA1A Silent p.L389L 0.19 TCGA-GF-A3OT-06 19 1481873 1481873 G A PCSK4 Missense_Mutation p.T718I 0.24 tolerated(0.24) benign(0.235) TCGA-GF-A3OT-06 19 15079115 15079115 C T SLC1A6 Missense_Mutation p.R183K 0.21 deleterious(0) benign(0.025) TCGA-GF-A3OT-06 19 15276261 15276261 G A NOTCH3 Silent p.I1911I 0.21 TCGA-GF-A3OT-06 19 15376337 15376337 G A BRD4 Missense_Mutation p.P226L 0.19 unknown(0) TCGA-GF-A3OT-06 19 15730487 15730487 C T CYP4F8 RNA 0.14 TCGA-GF-A3OT-06 19 17922508 17922508 C T B3GNT3 Silent p.H232H 0.29 TCGA-GF-A3OT-06 19 17922974 17922974 G A B3GNT3 3'UTR 0.18 TCGA-GF-A3OT-06 19 18943028 18943028 G A UPF1 Missense_Mutation p.E4K 0.19 deleterious_low_confidence(0.01) benign(0.075) TCGA-GF-A3OT-06 19 19360599 19360599 G A NCAN Missense_Mutation p.R1282Q 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-GF-A3OT-06 19 20117516 20117516 G A ZNF682 Silent p.A265A 0.20 TCGA-GF-A3OT-06 19 2073230 2073230 C T MOB3A 3'UTR 0.31 TCGA-GF-A3OT-06 19 30313009 30313009 C T CCNE1 Missense_Mutation p.P271L 0.27 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 19 35176509 35176509 C T ZNF302 3'UTR 0.18 TCGA-GF-A3OT-06 19 35251304 35251304 G C ZNF599 Missense_Mutation p.N134K 0.14 tolerated(0.25) benign(0.002) TCGA-GF-A3OT-06 19 35633400 35633400 G A FXYD1 Silent p.E77E 0.16 TCGA-GF-A3OT-06 19 39016011 39016011 C T RYR1 Missense_Mutation p.R3499W 0.19 benign(0.317) TCGA-GF-A3OT-06 19 40519997 40519997 G A ZNF546 Missense_Mutation p.E274K 0.22 tolerated(0.23) possibly_damaging(0.621) TCGA-GF-A3OT-06 19 42083885 42083885 A G CEACAM21 Missense_Mutation p.Q133R 0.27 tolerated(0.56) benign(0.055) TCGA-GF-A3OT-06 19 4217071 4217071 G A ANKRD24 Missense_Mutation p.M638I 0.23 tolerated_low_confidence(0.25) benign(0) TCGA-GF-A3OT-06 19 4219687 4219687 G A ANKRD24 Missense_Mutation p.E1035K 0.18 tolerated(0.08) probably_damaging(0.965) TCGA-GF-A3OT-06 19 42471468 42471468 G A ATP1A3 Silent p.F995F 0.39 TCGA-GF-A3OT-06 19 43530617 43530617 C T PSG11 5'UTR 0.19 TCGA-GF-A3OT-06 19 44223535 44223535 C T IRGC Silent p.G275G 0.29 TCGA-GF-A3OT-06 19 45762442 45762442 C T MARK4 Missense_Mutation p.R83W 0.23 deleterious(0) probably_damaging(0.994) TCGA-GF-A3OT-06 19 46112870 46112870 T A EML2 3'Flank 0.13 TCGA-GF-A3OT-06 19 46623582 46623582 G A IGFL3 3'UTR 0.28 TCGA-GF-A3OT-06 19 47423663 47423668 GTTTAT CAA ARHGAP35 In_Frame_Del p.F578_I579delinsN 0.18 TCGA-GF-A3OT-06 19 50105096 50105096 C T PRR12 Missense_Mutation p.A1565V 0.31 unknown(0) TCGA-GF-A3OT-06 19 51525621 51525621 C A KLK11 3'UTR 0.40 TCGA-GF-A3OT-06 19 51525622 51525622 C T KLK11 3'UTR 0.40 TCGA-GF-A3OT-06 19 51582165 51582165 G A KLK14 Silent p.S186S 0.25 TCGA-GF-A3OT-06 19 51984797 51984797 C T CEACAM18 Missense_Mutation p.S245F 0.10 deleterious(0.02) benign(0.066) TCGA-GF-A3OT-06 19 53208030 53208030 G A ZNF611 3'UTR 0.22 TCGA-GF-A3OT-06 19 54310827 54310827 C T NLRP12 Missense_Mutation p.R722Q 0.31 tolerated(0.57) possibly_damaging(0.747) TCGA-GF-A3OT-06 19 55449566 55449566 G A NLRP7 Missense_Mutation p.R659C 0.16 tolerated(0.17) benign(0.007) TCGA-GF-A3OT-06 19 56423937 56423937 C T NLRP13 Missense_Mutation p.E416K 0.24 deleterious(0) probably_damaging(0.918) TCGA-GF-A3OT-06 19 56481962 56481962 C T NLRP8 Missense_Mutation p.L812F 0.27 deleterious(0) probably_damaging(0.997) TCGA-GF-A3OT-06 19 57133335 57133335 C T ZNF71 Missense_Mutation p.S227F 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-GF-A3OT-06 19 5754252 5754252 C T CATSPERD Missense_Mutation p.P425L 0.23 deleterious(0.02) probably_damaging(1) TCGA-GF-A3OT-06 19 57642853 57642853 C T USP29 3'UTR 0.16 TCGA-GF-A3OT-06 19 57647171 57647171 T C ZIM3 Silent p.S178S 0.23 TCGA-GF-A3OT-06 19 58189851 58189851 G A ZSCAN4 Missense_Mutation p.G294R 0.22 tolerated(0.1) benign(0.1) TCGA-GF-A3OT-06 19 59028743 59028743 G A ZBTB45 Silent p.L100L 0.12 TCGA-GF-A3OT-06 19 6040081 6040081 G A RFX2 Silent p.I144I 0.28 TCGA-GF-A3OT-06 19 6682195 6682195 G A C3 Silent p.S1406S 0.18 TCGA-GF-A3OT-06 19 8430912 8430912 G A ANGPTL4 Silent p.E131E 0.25 TCGA-GF-A3OT-06 19 8922209 8922209 G A ZNF558 Silent p.P319P 0.25 TCGA-GF-A3OT-06 19 9325379 9325379 G A OR7D4 Silent p.I45I 0.19 TCGA-GF-A3OT-06 19 9578750 9578750 G A ZNF560 Silent p.S291S 0.24 TCGA-GF-A3OT-06 1 103354185 103354185 C T COL11A1 Missense_Mutation p.G1519E 0.21 unknown(0) TCGA-GF-A3OT-06 1 111490575 111490575 G A LRIF1 3'UTR 0.15 TCGA-GF-A3OT-06 1 111857955 111857955 C T CHIA Silent p.F126F 0.52 TCGA-GF-A3OT-06 1 112042569 112042569 T A ADORA3 Intron 0.40 TCGA-GF-A3OT-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.40 deleterious(0.01) benign(0.045) TCGA-GF-A3OT-06 1 11887244 11887244 C T CLCN6 Missense_Mutation p.S269L 0.20 deleterious(0) probably_damaging(0.949) TCGA-GF-A3OT-06 1 145415587 145415587 C T HFE2 Missense_Mutation p.P136S 0.41 deleterious(0.05) benign(0.099) TCGA-GF-A3OT-06 1 150128401 150128401 G A PLEKHO1 Splice_Site p.X106_splice 0.40 TCGA-GF-A3OT-06 1 153012733 153012733 C T SPRR2D Silent p.P30P 0.22 TCGA-GF-A3OT-06 1 158299161 158299161 C T CD1B Nonsense_Mutation p.W295* 0.20 TCGA-GF-A3OT-06 1 158299162 158299162 C T CD1B Nonsense_Mutation p.W295* 0.20 TCGA-GF-A3OT-06 1 159410378 159410378 C G OR10J1 Missense_Mutation p.T277S 0.47 tolerated(1) benign(0.052) TCGA-GF-A3OT-06 1 16378205 16378205 G A CLCNKB Missense_Mutation p.G433E 0.26 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 1 171621186 171621186 C T MYOC Missense_Mutation p.R189Q 0.22 tolerated(0.48) benign(0.004) TCGA-GF-A3OT-06 1 17326973 17326973 G A ATP13A2 Silent p.D254D 0.56 TCGA-GF-A3OT-06 1 175365849 175365849 G A TNR Silent p.I357I 0.44 TCGA-GF-A3OT-06 1 17672607 17672607 G A PADI4 Silent p.E340E 0.39 TCGA-GF-A3OT-06 1 197032094 197032094 T C F13B Missense_Mutation p.K53R 0.23 deleterious(0.04) benign(0.072) TCGA-GF-A3OT-06 1 203017437 203017437 G A PPFIA4 5'Flank 0.41 TCGA-GF-A3OT-06 1 203198762 203198762 C T CHIT1 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.985) TCGA-GF-A3OT-06 1 203708954 203708954 C T ATP2B4 Missense_Mutation p.S1197F 0.58 deleterious_low_confidence(0) unknown(0) TCGA-GF-A3OT-06 1 207741239 207741239 C T CR1 Silent p.P1341P 0.25 TCGA-GF-A3OT-06 1 210970866 210970866 C T KCNH1 Silent p.E633E 0.45 TCGA-GF-A3OT-06 1 216591896 216591896 C T USH2A Missense_Mutation p.G204E 0.16 benign(0.163) TCGA-GF-A3OT-06 1 223567300 223567300 C T C1orf65 Silent p.F161F 0.54 TCGA-GF-A3OT-06 1 226074672 226074672 G A LEFTY1 Missense_Mutation p.P286S 0.19 deleterious(0.03) probably_damaging(0.934) TCGA-GF-A3OT-06 1 228109337 228109337 C T WNT9A Missense_Mutation p.G327D 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 1 232538146 232538146 G A SIPA1L2 Missense_Mutation p.L1672F 0.48 deleterious(0) probably_damaging(0.987) TCGA-GF-A3OT-06 1 23381647 23381647 C T KDM1A Silent p.P292P 0.44 TCGA-GF-A3OT-06 1 23381648 23381648 C T KDM1A Silent p.L293L 0.44 TCGA-GF-A3OT-06 1 248790366 248790366 C T OR2T11 Missense_Mutation p.G22R 0.21 tolerated(0.41) probably_damaging(0.912) TCGA-GF-A3OT-06 1 33990587 33990587 C T CSMD2 Missense_Mutation p.G3287R 0.43 deleterious(0) possibly_damaging(0.495) TCGA-GF-A3OT-06 1 34080130 34080130 C T CSMD2 Nonsense_Mutation p.W1996* 0.37 TCGA-GF-A3OT-06 1 34401533 34401533 C T CSMD2 Silent p.G140G 0.23 TCGA-GF-A3OT-06 1 36521444 36521444 C T AGO3 3'UTR 0.30 TCGA-GF-A3OT-06 1 39788335 39788335 C T MACF1 Missense_Mutation p.S1367F 0.23 probably_damaging(0.994) TCGA-GF-A3OT-06 1 39788336 39788336 C T MACF1 Silent p.S1367S 0.22 TCGA-GF-A3OT-06 1 41978972 41978972 C T HIVEP3 Missense_Mutation p.E1974K 0.37 benign(0.074) TCGA-GF-A3OT-06 1 43300731 43300731 C T ERMAP Silent p.S152S 0.29 TCGA-GF-A3OT-06 1 43853204 43853204 C G MED8 Silent p.V80V 0.55 TCGA-GF-A3OT-06 1 45960678 45960678 G A CCDC163P 3'Flank 0.47 TCGA-GF-A3OT-06 1 47515966 47515966 G A CYP4X1 3'UTR 0.61 TCGA-GF-A3OT-06 1 82416062 82416062 C T LPHN2 Missense_Mutation p.P463L 0.43 tolerated(0.05) probably_damaging(0.925) TCGA-GF-A3OT-06 1 87029358 87029358 C T CLCA4 Missense_Mutation p.H155Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-GF-A3OT-06 1 89607244 89607244 C T GBP7 Missense_Mutation p.E485K 0.45 deleterious(0.04) benign(0.172) TCGA-GF-A3OT-06 1 89607329 89607329 T G GBP7 Silent p.A456A 0.24 TCGA-GF-A3OT-06 20 20150033 20150033 G A C20orf26 Silent p.V438V 0.25 TCGA-GF-A3OT-06 20 2464742 2464742 G A ZNF343 Missense_Mutation p.R289C 0.25 deleterious(0) probably_damaging(0.912) TCGA-GF-A3OT-06 20 30734616 30734616 C T TM9SF4 Silent p.T304T 0.16 TCGA-GF-A3OT-06 20 35299773 35299773 C G NDRG3 Missense_Mutation p.D187H 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-GF-A3OT-06 20 3653579 3653579 G A ADAM33 Intron 0.50 TCGA-GF-A3OT-06 20 42683150 42683150 G A TOX2 Missense_Mutation p.G288E 0.26 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 20 44845478 44845478 G A CDH22 Silent p.P275P 0.17 TCGA-GF-A3OT-06 20 49509384 49509384 G A ADNP Missense_Mutation p.L623F 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-GF-A3OT-06 20 5294605 5294605 G A PROKR2 Silent p.V137V 0.21 TCGA-GF-A3OT-06 20 56094421 56094421 G A CTCFL Missense_Mutation p.T256I 0.23 tolerated(0.08) benign(0.105) TCGA-GF-A3OT-06 20 57415683 57415683 C T RP4-806M20.3 5'Flank 0.21 TCGA-GF-A3OT-06 20 57767386 57767386 G A ZNF831 Missense_Mutation p.G438S 0.27 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 20 61162139 61162139 G A C20orf166 Intron 0.31 TCGA-GF-A3OT-06 20 9391729 9391729 C T PLCB4 Missense_Mutation p.S670L 0.14 tolerated(0.16) benign(0.422) TCGA-GF-A3OT-06 21 10862625 10862625 G A IGHV1OR21-1 Missense_Mutation p.D2N 0.06 deleterious(0.02) possibly_damaging(0.827) TCGA-GF-A3OT-06 21 19737500 19737500 G A TMPRSS15 Missense_Mutation p.P244S 0.19 tolerated(0.12) possibly_damaging(0.893) TCGA-GF-A3OT-06 21 27121396 27121396 C G GABPA Missense_Mutation p.T91S 0.20 tolerated(0.07) benign(0.011) TCGA-GF-A3OT-06 21 35281407 35281407 G T AP000304.12 Missense_Mutation p.P52T 0.19 deleterious(0.01) benign(0.265) TCGA-GF-A3OT-06 21 38308998 38308998 G A HLCS Silent p.S249S 0.22 TCGA-GF-A3OT-06 21 39087323 39087323 C T KCNJ6 Missense_Mutation p.R46Q 0.24 tolerated(0.21) benign(0.004) TCGA-GF-A3OT-06 21 41668001 41668001 G A DSCAM Silent p.I721I 0.16 TCGA-GF-A3OT-06 21 43413584 43413584 A G ZBTB21 Silent p.S207S 0.21 TCGA-GF-A3OT-06 21 44840966 44840966 G A SIK1 Silent p.F224F 0.16 TCGA-GF-A3OT-06 21 45819255 45819255 G A TRPM2 Silent p.G713G 0.22 TCGA-GF-A3OT-06 21 46901911 46901911 C T COL18A1 Missense_Mutation p.P729L 0.23 possibly_damaging(0.851) TCGA-GF-A3OT-06 21 47831650 47831650 C G PCNT Missense_Mutation p.S1888C 0.23 possibly_damaging(0.869) TCGA-GF-A3OT-06 22 17071989 17071989 C T CCT8L2 Silent p.G484G 0.22 TCGA-GF-A3OT-06 22 17690307 17690307 G A CECR1 Silent p.F87F 0.16 TCGA-GF-A3OT-06 22 18273570 18273570 G A MICAL3 Silent p.L1979L 0.21 TCGA-GF-A3OT-06 22 24167438 24167438 C T SMARCB1 Silent p.S274S 0.24 TCGA-GF-A3OT-06 22 24621549 24621549 C T GGT5 Missense_Mutation p.R434Q 0.20 deleterious(0) possibly_damaging(0.658) TCGA-GF-A3OT-06 22 26164846 26164846 C T MYO18B Silent p.F321F 0.15 TCGA-GF-A3OT-06 22 26219534 26219534 G A MYO18B Missense_Mutation p.E862K 0.24 deleterious(0.02) possibly_damaging(0.852) TCGA-GF-A3OT-06 22 26228956 26228956 C T MYO18B Missense_Mutation p.P1018S 0.14 tolerated(0.67) possibly_damaging(0.495) TCGA-GF-A3OT-06 22 29879464 29879464 G A NEFH Silent p.R328R 0.23 TCGA-GF-A3OT-06 22 30812280 30812280 G A SEC14L2 Silent p.K323K 0.17 TCGA-GF-A3OT-06 22 32550255 32550255 C T C22orf42 Missense_Mutation p.G95R 0.21 tolerated_low_confidence(0.59) probably_damaging(0.98) TCGA-GF-A3OT-06 22 36003385 36003385 C T MB Missense_Mutation p.D142N 0.13 deleterious(0) possibly_damaging(0.803) TCGA-GF-A3OT-06 22 38948707 38948707 G A DMC1 Missense_Mutation p.R129C 0.22 deleterious(0) probably_damaging(0.984) TCGA-GF-A3OT-06 22 39358507 39358507 G A APOBEC3A Missense_Mutation p.G198E 0.17 tolerated(0.44) benign(0.042) TCGA-GF-A3OT-06 22 39439055 39439055 C T APOBEC3F Missense_Mutation p.P44L 0.31 tolerated(0.05) benign(0.067) TCGA-GF-A3OT-06 22 41195056 41195056 G A SLC25A17 Missense_Mutation p.P29L 0.36 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 22 41626344 41626344 G A L3MBTL2 3'UTR 0.18 TCGA-GF-A3OT-06 22 45309857 45309857 G A PHF21B Missense_Mutation p.H226Y 0.27 tolerated(1) benign(0.004) TCGA-GF-A3OT-06 22 50187690 50187690 C - BRD1 Frame_Shift_Del p.G784Afs*109 0.21 TCGA-GF-A3OT-06 22 50705394 50705394 G A MAPK11 Silent p.I193I 0.18 TCGA-GF-A3OT-06 22 50869716 50869716 G A PPP6R2 Missense_Mutation p.E415K 0.22 tolerated(0.13) benign(0.014) TCGA-GF-A3OT-06 2 101097591 101097591 C T NMS Missense_Mutation p.H126Y 0.23 tolerated(1) benign(0.002) TCGA-GF-A3OT-06 2 102791057 102791057 C T IL1R1 Silent p.F334F 0.29 TCGA-GF-A3OT-06 2 102791117 102791117 C T IL1R1 Silent p.F354F 0.30 TCGA-GF-A3OT-06 2 108609540 108609540 G A SLC5A7 Silent p.L135L 0.35 TCGA-GF-A3OT-06 2 112754998 112754998 T A MERTK Missense_Mutation p.L517M 0.22 deleterious(0.01) possibly_damaging(0.738) TCGA-GF-A3OT-06 2 113537239 113537239 G A IL1A Silent p.I108I 0.19 TCGA-GF-A3OT-06 2 115200379 115200379 C T DPP10 Silent p.S8S 0.25 TCGA-GF-A3OT-06 2 119604321 119604321 C G EN1 Silent p.R141R 0.10 TCGA-GF-A3OT-06 2 119739977 119739977 G A MARCO Missense_Mutation p.G352R 0.22 deleterious(0) unknown(0) TCGA-GF-A3OT-06 2 131976362 131976362 G A POTEE Missense_Mutation p.M129I 0.15 deleterious_low_confidence(0.04) benign(0) TCGA-GF-A3OT-06 2 141232749 141232749 G A LRP1B Missense_Mutation p.H3195Y 0.28 benign(0.152) TCGA-GF-A3OT-06 2 152541388 152541388 G A NEB Silent p.S913S 0.14 TCGA-GF-A3OT-06 2 163360985 163360985 G A KCNH7 Nonsense_Mutation p.R366* 0.32 TCGA-GF-A3OT-06 2 165353893 165353893 G A GRB14 Silent p.L404L 0.18 TCGA-GF-A3OT-06 2 166019296 166019296 T G SCN3A Missense_Mutation p.K246T 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-GF-A3OT-06 2 166026969 166026969 C T SCN3A Silent p.R118R 0.24 TCGA-GF-A3OT-06 2 166535800 166535800 C T CSRNP3 Missense_Mutation p.S432F 0.28 deleterious(0) possibly_damaging(0.837) TCGA-GF-A3OT-06 2 167168272 167168272 C T SCN9A 5'UTR 0.23 TCGA-GF-A3OT-06 2 170062081 170062081 G A LRP2 Silent p.F2541F 0.36 TCGA-GF-A3OT-06 2 176948377 176948377 G A EVX2 Missense_Mutation p.S43L 0.11 tolerated(0.17) benign(0.121) TCGA-GF-A3OT-06 2 179542417 179542417 C T TTN Missense_Mutation p.E11408K 0.36 TCGA-GF-A3OT-06 2 179710443 179710443 C T CCDC141 Silent p.P1128P 0.32 TCGA-GF-A3OT-06 2 197183995 197183995 G A HECW2 Missense_Mutation p.S540F 0.22 deleterious_low_confidence(0.03) benign(0.048) TCGA-GF-A3OT-06 2 205990441 205990441 C A PARD3B Missense_Mutation p.H472N 0.24 tolerated(0.54) benign(0) TCGA-GF-A3OT-06 2 208631601 208631601 G A FZD5 3'UTR 0.18 TCGA-GF-A3OT-06 2 209358099 209358099 G A PTH2R Silent p.T456T 0.22 TCGA-GF-A3OT-06 2 210940450 210940450 G A KANSL1L Silent p.S527S 0.15 TCGA-GF-A3OT-06 2 215815680 215815680 G A ABCA12 Missense_Mutation p.L2259F 0.26 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 2 219204780 219204780 C T PNKD Silent p.L127L 0.26 TCGA-GF-A3OT-06 2 219301314 219301314 G A VIL1 Missense_Mutation p.E646K 0.21 tolerated(0.46) benign(0.17) TCGA-GF-A3OT-06 2 231177494 231177494 G A SP140 3'UTR 0.12 TCGA-GF-A3OT-06 2 232087527 232087527 A G ARMC9 Silent p.T197T 0.20 TCGA-GF-A3OT-06 2 233990529 233990529 G A INPP5D Missense_Mutation p.E142K 0.09 tolerated(0.12) possibly_damaging(0.686) TCGA-GF-A3OT-06 2 26152834 26152834 G A KIF3C Missense_Mutation p.P702L 0.30 possibly_damaging(0.559) TCGA-GF-A3OT-06 2 26152835 26152835 G A KIF3C Missense_Mutation p.P702S 0.29 benign(0.026) TCGA-GF-A3OT-06 2 29519898 29519898 C A ALK Missense_Mutation p.G558V 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 2 31602786 31602786 G A XDH Silent p.L397L 0.20 TCGA-GF-A3OT-06 2 33505195 33505195 G A LTBP1 Missense_Mutation p.G1028R 0.24 deleterious(0) probably_damaging(0.998) TCGA-GF-A3OT-06 2 39431685 39431685 C T CDKL4 Missense_Mutation p.G146E 0.18 deleterious(0.01) possibly_damaging(0.462) TCGA-GF-A3OT-06 2 40656791 40656791 C T SLC8A1 Nonsense_Mutation p.W210* 0.20 TCGA-GF-A3OT-06 2 48023039 48023039 A G MSH6 Missense_Mutation p.K155R 0.10 tolerated(0.23) benign(0.091) TCGA-GF-A3OT-06 2 48936112 48936112 G A LHCGR Missense_Mutation p.R219C 0.21 tolerated(0.05) possibly_damaging(0.849) TCGA-GF-A3OT-06 2 61300669 61300669 G C KIAA1841 Missense_Mutation p.M138I 0.16 deleterious(0.05) benign(0) TCGA-GF-A3OT-06 2 71827915 71827915 G A DYSF Silent p.R1280R 0.25 TCGA-GF-A3OT-06 2 71896784 71896784 C T DYSF Missense_Mutation p.R1898C 0.22 deleterious(0.02) possibly_damaging(0.588) TCGA-GF-A3OT-06 2 73466833 73466833 G T CCT7 Silent p.V23V 0.17 TCGA-GF-A3OT-06 2 79384774 79384774 C T REG3A Missense_Mutation p.M128I 0.16 deleterious(0.04) benign(0.002) TCGA-GF-A3OT-06 2 84668385 84668385 G A SUCLG1 Missense_Mutation p.P173S 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 3 100963506 100963506 A C IMPG2 Missense_Mutation p.S557A 0.23 tolerated(0.11) benign(0.046) TCGA-GF-A3OT-06 3 102153961 102153961 G A ZPLD1 Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(0.19) benign(0) TCGA-GF-A3OT-06 3 10264317 10264317 C T IRAK2 Intron 0.27 TCGA-GF-A3OT-06 3 10280489 10280489 C T IRAK2 Missense_Mutation p.P511S 0.22 tolerated(0.23) benign(0.004) TCGA-GF-A3OT-06 3 108072559 108072559 G A HHLA2 Missense_Mutation p.G117E 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 3 108627001 108627001 C T GUCA1C Silent p.L166L 0.18 TCGA-GF-A3OT-06 3 109031471 109031471 G A DPPA2 Silent p.D34D 0.22 TCGA-GF-A3OT-06 3 113320486 113320486 G T SIDT1 Missense_Mutation p.G366V 0.24 deleterious(0.01) benign(0.41) TCGA-GF-A3OT-06 3 113955735 113955735 G A ZNF80 Missense_Mutation p.L63F 0.19 tolerated(0.44) possibly_damaging(0.61) TCGA-GF-A3OT-06 3 119445028 119445028 C T MAATS1 Silent p.L231L 0.18 TCGA-GF-A3OT-06 3 120977920 120977920 A G STXBP5L Silent p.P621P 0.18 TCGA-GF-A3OT-06 3 121137202 121137202 G A STXBP5L Missense_Mutation p.G1106E 0.13 deleterious(0) probably_damaging(0.928) TCGA-GF-A3OT-06 3 121215771 121215771 G A POLQ Missense_Mutation p.T721I 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 3 121351010 121351010 C A HCLS1 Missense_Mutation p.G421V 0.24 tolerated(0.26) probably_damaging(0.953) TCGA-GF-A3OT-06 3 121980708 121980708 C T CASR Missense_Mutation p.L276F 0.29 tolerated(0.14) probably_damaging(0.973) TCGA-GF-A3OT-06 3 12650812 12650812 T G RAF1 Missense_Mutation p.N115H 0.26 tolerated(0.06) possibly_damaging(0.841) TCGA-GF-A3OT-06 3 126916098 126916098 G A C3orf56 Nonsense_Mutation p.W190* 0.31 TCGA-GF-A3OT-06 3 131261452 131261452 C T CPNE4 Silent p.E496E 0.24 TCGA-GF-A3OT-06 3 132241685 132241685 T C DNAJC13 Missense_Mutation p.L1896S 0.19 deleterious(0) possibly_damaging(0.517) TCGA-GF-A3OT-06 3 135745729 135745729 C T PPP2R3A Missense_Mutation p.S684F 0.23 tolerated(0.35) benign(0) TCGA-GF-A3OT-06 3 136714338 136714338 G A IL20RB Nonsense_Mutation p.W255* 0.21 TCGA-GF-A3OT-06 3 138738986 138738986 C T PRR23B Missense_Mutation p.G173D 0.34 tolerated(0.11) possibly_damaging(0.883) TCGA-GF-A3OT-06 3 139236424 139236424 C T RBP1 3'UTR 0.22 TCGA-GF-A3OT-06 3 148600313 148600313 C T CPA3 Missense_Mutation p.R237C 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 3 149374934 149374934 T C WWTR1 Missense_Mutation p.K54E 0.31 deleterious(0) benign(0.014) TCGA-GF-A3OT-06 3 151055902 151055902 T A P2RY12 Silent p.V244V 0.35 TCGA-GF-A3OT-06 3 155200375 155200375 T C PLCH1 Missense_Mutation p.D1155G 0.28 deleterious_low_confidence(0.02) benign(0.224) TCGA-GF-A3OT-06 3 167170817 167170817 T A SERPINI2 Nonsense_Mutation p.K291* 0.16 TCGA-GF-A3OT-06 3 169654229 169654229 C T SAMD7 Nonsense_Mutation p.Q382* 0.21 TCGA-GF-A3OT-06 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-GF-A3OT-06 3 178984559 178984559 G A KCNMB3 5'UTR 0.23 TCGA-GF-A3OT-06 3 184910033 184910033 G A EHHADH Missense_Mutation p.S718F 0.28 deleterious(0.03) benign(0.057) TCGA-GF-A3OT-06 3 189705417 189705417 G A LEPREL1 Missense_Mutation p.L333F 0.20 deleterious(0) probably_damaging(0.988) TCGA-GF-A3OT-06 3 194362669 194362669 A C LSG1 3'UTR 0.26 TCGA-GF-A3OT-06 3 197402345 197402345 A C KIAA0226 Missense_Mutation p.N896K 0.23 tolerated(0.06) benign(0.12) TCGA-GF-A3OT-06 3 20141445 20141445 A T KAT2B Missense_Mutation p.Q223L 0.18 deleterious(0) possibly_damaging(0.568) TCGA-GF-A3OT-06 3 30769703 30769703 G A GADL1 3'UTR 0.17 TCGA-GF-A3OT-06 3 32490966 32490966 C T CMTM7 Silent p.I118I 0.19 TCGA-GF-A3OT-06 3 32568224 32568224 G A DYNC1LI1 3'UTR 0.32 TCGA-GF-A3OT-06 3 36756934 36756934 G A DCLK3 Missense_Mutation p.P611L 0.22 tolerated(0.07) possibly_damaging(0.682) TCGA-GF-A3OT-06 3 36897918 36897918 C T TRANK1 Missense_Mutation p.E1055K 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-GF-A3OT-06 3 38645360 38645360 G A SCN5A Missense_Mutation p.P578L 0.22 tolerated(0.52) probably_damaging(0.986) TCGA-GF-A3OT-06 3 45127319 45127319 G A CDCP1 Silent p.P774P 0.23 TCGA-GF-A3OT-06 3 47039691 47039691 C T NBEAL2 Silent p.T1031T 0.25 TCGA-GF-A3OT-06 3 47039692 47039692 C T NBEAL2 Missense_Mutation p.L1032F 0.25 deleterious(0.02) benign(0.212) TCGA-GF-A3OT-06 3 48730484 48730484 G A IP6K2 Silent p.L111L 0.23 TCGA-GF-A3OT-06 3 48730485 48730485 G A IP6K2 Silent p.L110L 0.23 TCGA-GF-A3OT-06 3 50329957 50329957 G A IFRD2 5'Flank 0.20 TCGA-GF-A3OT-06 3 54928764 54928764 T C CACNA2D3 Intron 0.22 TCGA-GF-A3OT-06 3 64617578 64617578 T G ADAMTS9 Missense_Mutation p.L733F 0.31 deleterious(0) probably_damaging(0.998) TCGA-GF-A3OT-06 3 98073443 98073443 C T OR5K4 Missense_Mutation p.S249L 0.22 deleterious(0.02) benign(0.073) TCGA-GF-A3OT-06 4 100208729 100208729 G A ADH1A Missense_Mutation p.R38C 0.16 deleterious(0.04) benign(0.377) TCGA-GF-A3OT-06 4 104041316 104041316 G A CENPE Nonsense_Mutation p.Q2440* 0.39 TCGA-GF-A3OT-06 4 110442725 110442725 C T SEC24B Silent p.S817S 0.26 TCGA-GF-A3OT-06 4 114117542 114117542 C T ANK2 Missense_Mutation p.H69Y 0.20 probably_damaging(0.936) TCGA-GF-A3OT-06 4 114286226 114286226 C T ANK2 Silent p.I3640I 0.19 TCGA-GF-A3OT-06 4 114378480 114378480 G A CAMK2D Intron 0.29 TCGA-GF-A3OT-06 4 119736678 119736678 G A SEC24D Missense_Mutation p.P201S 0.24 tolerated(0.12) benign(0.01) TCGA-GF-A3OT-06 4 122085294 122085294 C T TNIP3 Missense_Mutation p.G73E 0.20 tolerated(0.52) benign(0.026) TCGA-GF-A3OT-06 4 141544026 141544026 C T TBC1D9 Missense_Mutation p.E1042K 0.33 deleterious(0.04) probably_damaging(0.991) TCGA-GF-A3OT-06 4 153332598 153332598 G A FBXW7 Nonsense_Mutation p.Q120* 0.19 TCGA-GF-A3OT-06 4 154336037 154336037 A G MND1 3'UTR 0.26 TCGA-GF-A3OT-06 4 154702753 154702753 G A SFRP2 Silent p.T246T 0.20 TCGA-GF-A3OT-06 4 155533806 155533806 G T FGG 5'Flank 0.18 TCGA-GF-A3OT-06 4 158065068 158065068 C T GLRB Silent p.S287S 0.33 TCGA-GF-A3OT-06 4 164246368 164246368 C T NPY1R 3'UTR 0.13 TCGA-GF-A3OT-06 4 165890881 165890881 C T TRIM61 Missense_Mutation p.E92K 0.15 tolerated(0.07) benign(0.166) TCGA-GF-A3OT-06 4 178897055 178897055 G A LINC01098 Silent p.Q86Q 0.22 TCGA-GF-A3OT-06 4 184562617 184562617 C T RWDD4 Missense_Mutation p.S180N 0.19 deleterious(0) benign(0.193) TCGA-GF-A3OT-06 4 184931511 184931511 G A STOX2 Missense_Mutation p.G507E 0.21 deleterious(0.04) probably_damaging(0.989) TCGA-GF-A3OT-06 4 187172926 187172926 C T KLKB1 Missense_Mutation p.S352F 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 4 187510253 187510253 G A FAT1 Silent p.I4420I 0.19 TCGA-GF-A3OT-06 4 44624459 44624459 C T YIPF7 Missense_Mutation p.G272E 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 4 44624460 44624460 C T YIPF7 Missense_Mutation p.G272R 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 4 46973157 46973157 G A GABRA4 Missense_Mutation p.L273F 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 4 55953799 55953799 G A KDR Missense_Mutation p.H1213Y 0.21 tolerated(0.08) possibly_damaging(0.808) TCGA-GF-A3OT-06 4 55972865 55972865 C T KDR Missense_Mutation p.G509R 0.24 tolerated(0.06) benign(0.183) TCGA-GF-A3OT-06 4 56890672 56890672 G A CEP135 Missense_Mutation p.R1109Q 0.23 deleterious(0.01) probably_damaging(1) TCGA-GF-A3OT-06 4 5969157 5969157 C T C4orf50 Missense_Mutation p.M621I 0.26 tolerated(0.15) benign(0.037) TCGA-GF-A3OT-06 4 62598778 62598778 G A LPHN3 Missense_Mutation p.R234Q 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-GF-A3OT-06 4 70079978 70079978 G A UGT2B11 Missense_Mutation p.P155S 0.18 deleterious(0.05) probably_damaging(1) TCGA-GF-A3OT-06 4 70361387 70361387 C T UGT2B4 Missense_Mutation p.D65N 0.27 tolerated(0.27) benign(0.081) TCGA-GF-A3OT-06 4 70864163 70864163 C T STATH Silent p.F3F 0.26 TCGA-GF-A3OT-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.24 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-GF-A3OT-06 4 79366792 79366792 C T FRAS1 Missense_Mutation p.H1928Y 0.17 benign(0.004) TCGA-GF-A3OT-06 4 8009831 8009831 C T ABLIM2 Missense_Mutation p.D525N 0.23 tolerated(0.14) benign(0.128) TCGA-GF-A3OT-06 4 89199751 89199751 G A PPM1K 5'UTR 0.31 TCGA-GF-A3OT-06 4 9943610 9943610 C T SLC2A9 Silent p.L247L 0.27 TCGA-GF-A3OT-06 5 101606459 101606459 G A SLCO4C1 Missense_Mutation p.S224L 0.36 tolerated(0.32) benign(0.022) TCGA-GF-A3OT-06 5 110835665 110835665 C T STARD4 Silent p.G179G 0.20 TCGA-GF-A3OT-06 5 115341655 115341655 C T AQPEP Missense_Mutation p.S695F 0.19 tolerated(0.42) benign(0.015) TCGA-GF-A3OT-06 5 120022042 120022042 C T PRR16 Nonsense_Mutation p.Q162* 0.20 TCGA-GF-A3OT-06 5 131607149 131607149 C T PDLIM4 Silent p.A220A 0.28 TCGA-GF-A3OT-06 5 135286927 135286927 G A LECT2 Nonsense_Mutation p.R92* 0.29 TCGA-GF-A3OT-06 5 135692713 135692713 G A TRPC7 Silent p.I121I 0.25 TCGA-GF-A3OT-06 5 13737583 13737583 G A DNAH5 Missense_Mutation p.H3745Y 0.24 benign(0.415) TCGA-GF-A3OT-06 5 13829767 13829767 A G DNAH5 Missense_Mutation p.I2099T 0.12 benign(0.415) TCGA-GF-A3OT-06 5 139889228 139889228 C G ANKHD1 Missense_Mutation p.L1258V 0.17 possibly_damaging(0.694) TCGA-GF-A3OT-06 5 139941380 139941380 G A APBB3 Intron 0.16 TCGA-GF-A3OT-06 5 140432091 140432091 G A PCDHB1 Missense_Mutation p.E346K 0.30 deleterious(0.03) benign(0.385) TCGA-GF-A3OT-06 5 140563687 140563687 C T PCDHB16 Missense_Mutation p.S518L 0.39 deleterious_low_confidence(0) benign(0.311) TCGA-GF-A3OT-06 5 140594040 140594040 C T PCDHB13 Silent p.F115F 0.21 TCGA-GF-A3OT-06 5 140627082 140627082 G A PCDHB15 Missense_Mutation p.D646N 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.788) TCGA-GF-A3OT-06 5 140723673 140723673 G A PCDHGA3 Missense_Mutation p.E25K 0.24 tolerated_low_confidence(0.13) benign(0.002) TCGA-GF-A3OT-06 5 140734937 140734937 G A PCDHGA4 Missense_Mutation p.R57Q 0.24 tolerated_low_confidence(0.62) benign(0.025) TCGA-GF-A3OT-06 5 140751397 140751397 C T PCDHGB3 Missense_Mutation p.P479L 0.17 tolerated(0.08) benign(0.136) TCGA-GF-A3OT-06 5 140774693 140774693 C T PCDHGA8 Silent p.P771P 0.16 TCGA-GF-A3OT-06 5 140788545 140788545 C T PCDHGB6 Missense_Mutation p.S259F 0.23 tolerated(0.13) benign(0.05) TCGA-GF-A3OT-06 5 147488344 147488344 G A SPINK5 Missense_Mutation p.D546N 0.20 tolerated(1) benign(0) TCGA-GF-A3OT-06 5 149576695 149576695 C T SLC6A7 Missense_Mutation p.S147F 0.19 deleterious(0) probably_damaging(0.993) TCGA-GF-A3OT-06 5 150321863 150321863 G A ZNF300P1 RNA 0.17 TCGA-GF-A3OT-06 5 150923154 150923154 G A FAT2 Missense_Mutation p.P2512S 0.21 probably_damaging(0.948) TCGA-GF-A3OT-06 5 151271999 151271999 G A GLRA1 Silent p.S19S 0.18 TCGA-GF-A3OT-06 5 156390218 156390218 T C TIMD4 5'UTR 0.19 TCGA-GF-A3OT-06 5 161569295 161569295 G A GABRG2 Missense_Mutation p.D339N 0.29 deleterious(0) probably_damaging(0.998) TCGA-GF-A3OT-06 5 168123363 168123363 C T SLIT3 Missense_Mutation p.E1006K 0.16 tolerated(0.13) probably_damaging(0.998) TCGA-GF-A3OT-06 5 177168292 177168292 C T FAM153A Missense_Mutation p.E59K 0.21 tolerated_low_confidence(0.52) benign(0.007) TCGA-GF-A3OT-06 5 178417617 178417617 G A GRM6 Silent p.L330L 0.19 TCGA-GF-A3OT-06 5 180219443 180219443 G A MGAT1 Missense_Mutation p.R177C 0.29 possibly_damaging(0.823) TCGA-GF-A3OT-06 5 180420145 180420145 G A BTNL3 Missense_Mutation p.E128K 0.25 deleterious(0.02) possibly_damaging(0.883) TCGA-GF-A3OT-06 5 31323187 31323187 C T CDH6 Silent p.F715F 0.21 TCGA-GF-A3OT-06 5 31323520 31323520 C T CDH6 3'UTR 0.22 TCGA-GF-A3OT-06 5 35727852 35727852 C T SPEF2 Missense_Mutation p.P997L 0.21 deleterious(0.03) possibly_damaging(0.702) TCGA-GF-A3OT-06 5 43613102 43613102 T C NNT Silent p.L82L 0.24 TCGA-GF-A3OT-06 5 54577307 54577307 G A DHX29 Nonsense_Mutation p.R668* 0.18 TCGA-GF-A3OT-06 5 79837533 79837533 C T FAM151B Missense_Mutation p.S238F 0.15 deleterious(0.02) benign(0.053) TCGA-GF-A3OT-06 5 81608652 81608652 C T ATP6AP1L Silent p.V118V 0.25 TCGA-GF-A3OT-06 5 96139153 96139153 G A ERAP1 Silent p.F159F 0.19 TCGA-GF-A3OT-06 5 96342189 96342189 C T LNPEP Nonsense_Mutation p.Q669* 0.37 TCGA-GF-A3OT-06 6 117245850 117245850 G A RFX6 Missense_Mutation p.R525Q 0.18 tolerated(0.06) possibly_damaging(0.556) TCGA-GF-A3OT-06 6 119245020 119245020 G A MCM9 Missense_Mutation p.P193S 0.26 deleterious(0.04) benign(0.174) TCGA-GF-A3OT-06 6 128294930 128294930 C T PTPRK Missense_Mutation p.G1344R 0.19 tolerated(0.48) probably_damaging(0.999) TCGA-GF-A3OT-06 6 13592122 13592122 C T SIRT5 Silent p.I157I 0.20 TCGA-GF-A3OT-06 6 136597327 136597327 C T BCLAF1 Missense_Mutation p.G446S 0.05 tolerated(0.28) benign(0.383) TCGA-GF-A3OT-06 6 143093351 143093351 G A HIVEP2 Missense_Mutation p.S842L 0.31 tolerated(0.64) benign(0.002) TCGA-GF-A3OT-06 6 150005421 150005421 C T LATS1 Nonsense_Mutation p.W268* 0.27 TCGA-GF-A3OT-06 6 151766735 151766735 T C RMND1 Missense_Mutation p.N71S 0.29 tolerated_low_confidence(0.33) benign(0.006) TCGA-GF-A3OT-06 6 160240298 160240298 C T PNLDC1 Silent p.I471I 0.22 TCGA-GF-A3OT-06 6 161508765 161508765 A T MAP3K4 Missense_Mutation p.T868S 0.22 tolerated(1) benign(0.001) TCGA-GF-A3OT-06 6 161508766 161508766 C T MAP3K4 Missense_Mutation p.T868I 0.21 tolerated(0.23) benign(0.001) TCGA-GF-A3OT-06 6 165832235 165832235 G A PDE10A Missense_Mutation p.R296C 0.29 deleterious(0) probably_damaging(0.961) TCGA-GF-A3OT-06 6 170156844 170156844 C A ERMARD Silent p.P149P 0.25 TCGA-GF-A3OT-06 6 24569086 24569086 G A KIAA0319 Missense_Mutation p.T688I 0.24 tolerated(0.1) benign(0.25) TCGA-GF-A3OT-06 6 24848308 24848308 G A FAM65B Missense_Mutation p.S341F 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 6 28541494 28541494 C T SCAND3 Silent p.G724G 0.30 TCGA-GF-A3OT-06 6 29574966 29574966 A T GABBR1 Missense_Mutation p.F674L 0.20 deleterious(0.03) benign(0.046) TCGA-GF-A3OT-06 6 31726370 31726370 C T MSH5 Missense_Mutation p.P397S 0.14 tolerated(0.23) benign(0.004) TCGA-GF-A3OT-06 6 31730276 31730276 G A MSH5 Missense_Mutation p.E826K 0.21 deleterious(0.04) possibly_damaging(0.559) TCGA-GF-A3OT-06 6 32137789 32137789 G A AGPAT1 Silent p.S211S 0.16 TCGA-GF-A3OT-06 6 32805546 32805546 G A TAP2 Silent p.A155A 0.20 TCGA-GF-A3OT-06 6 33284653 33284653 G A ZBTB22 Missense_Mutation p.P14L 0.17 deleterious_low_confidence(0) unknown(0) TCGA-GF-A3OT-06 6 33541542 33541542 G A BAK1 3'UTR 0.11 TCGA-GF-A3OT-06 6 33690964 33690964 C T IP6K3 Missense_Mutation p.V256I 0.20 deleterious(0.04) possibly_damaging(0.779) TCGA-GF-A3OT-06 6 34100929 34100929 G A GRM4 Silent p.A115A 0.26 TCGA-GF-A3OT-06 6 34825568 34825568 C T UHRF1BP1 Silent p.L547L 0.29 TCGA-GF-A3OT-06 6 35765004 35765004 G A CLPS Missense_Mutation p.P21L 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-GF-A3OT-06 6 36334677 36334677 C T ETV7 Missense_Mutation p.E295K 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 6 38810498 38810498 G A DNAH8 Missense_Mutation p.R1338K 0.29 benign(0.002) TCGA-GF-A3OT-06 6 39159151 39159151 G A KCNK5 Missense_Mutation p.P339S 0.14 tolerated(0.72) benign(0) TCGA-GF-A3OT-06 6 43042445 43042445 C T KLC4 3'UTR 0.26 TCGA-GF-A3OT-06 6 46133237 46133237 T G ENPP5 Missense_Mutation p.K298T 0.22 deleterious(0) probably_damaging(0.949) TCGA-GF-A3OT-06 6 52905945 52905945 G A ICK Silent p.I30I 0.27 TCGA-GF-A3OT-06 6 54806758 54806758 C T FAM83B Nonsense_Mutation p.R997* 0.30 TCGA-GF-A3OT-06 6 55933887 55933887 C T COL21A1 Missense_Mutation p.G683E 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 6 56917839 56917839 C T KIAA1586 Missense_Mutation p.S181F 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-GF-A3OT-06 6 73904250 73904250 G A KCNQ5 Missense_Mutation p.A657T 0.19 tolerated(0.28) possibly_damaging(0.826) TCGA-GF-A3OT-06 6 84234034 84234034 G A PRSS35 Missense_Mutation p.E292K 0.27 tolerated(0.39) possibly_damaging(0.728) TCGA-GF-A3OT-06 6 87725005 87725005 G A HTR1E 5'UTR 0.26 TCGA-GF-A3OT-06 6 90648060 90648060 G A BACH2 Missense_Mutation p.P616S 0.08 deleterious(0) benign(0.08) TCGA-GF-A3OT-06 6 93953130 93953130 G A EPHA7 3'UTR 0.17 TCGA-GF-A3OT-06 6 96652157 96652157 C T FUT9 3'UTR 0.17 TCGA-GF-A3OT-06 6 97247696 97247696 G A GPR63 5'UTR 0.27 TCGA-GF-A3OT-06 7 100349913 100349913 G A ZAN Missense_Mutation p.E729K 0.18 possibly_damaging(0.486) TCGA-GF-A3OT-06 7 100683600 100683600 C T MUC17 Missense_Mutation p.S2968F 0.23 possibly_damaging(0.791) TCGA-GF-A3OT-06 7 102087295 102087295 C T ORAI2 Silent p.G187G 0.16 TCGA-GF-A3OT-06 7 102967028 102967028 G A DNAJC2 Silent p.F178F 0.14 TCGA-GF-A3OT-06 7 103029537 103029537 A C SLC26A5 Missense_Mutation p.S478A 0.13 tolerated(1) probably_damaging(0.977) TCGA-GF-A3OT-06 7 103848396 103848396 G A ORC5 5'UTR 0.13 TCGA-GF-A3OT-06 7 107720127 107720127 G A LAMB4 Silent p.L602L 0.21 TCGA-GF-A3OT-06 7 11500355 11500355 G A THSD7A Missense_Mutation p.P847S 0.19 deleterious(0.01) possibly_damaging(0.839) TCGA-GF-A3OT-06 7 122338986 122338986 G T RNF133 5'UTR 0.20 TCGA-GF-A3OT-06 7 123594119 123594119 G A SPAM1 Silent p.K165K 0.18 TCGA-GF-A3OT-06 7 127254563 127254563 G A PAX4 Silent p.L129L 0.23 TCGA-GF-A3OT-06 7 137269993 137269993 C T DGKI Missense_Mutation p.D509N 0.20 tolerated(0.12) benign(0.415) TCGA-GF-A3OT-06 7 141758083 141758083 G A MGAM Silent p.E1258E 0.22 TCGA-GF-A3OT-06 7 141796173 141796173 C T MGAM Silent p.F1654F 0.16 TCGA-GF-A3OT-06 7 143028643 143028643 G A CLCN1 Splice_Site p.X355_splice 0.19 TCGA-GF-A3OT-06 7 143042803 143042803 C G CLCN1 Missense_Mutation p.S707C 0.50 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 7 143095983 143095983 G A EPHA1 Silent p.S349S 0.13 TCGA-GF-A3OT-06 7 150164323 150164323 C T GIMAP8 Silent p.I179I 0.30 TCGA-GF-A3OT-06 7 151072975 151072975 C T NUB1 Silent p.S503S 0.20 TCGA-GF-A3OT-06 7 152007158 152007158 T A KMT2C Missense_Mutation p.T248S 0.16 benign(0.146) TCGA-GF-A3OT-06 7 29918687 29918687 C T WIPF3 Missense_Mutation p.P96S 0.36 deleterious(0) probably_damaging(0.948) TCGA-GF-A3OT-06 7 30795321 30795321 C T INMT Silent p.L216L 0.26 TCGA-GF-A3OT-06 7 30831093 30831093 C A FAM188B Missense_Mutation p.P326T 0.29 tolerated(0.45) benign(0.002) TCGA-GF-A3OT-06 7 30831094 30831094 C T FAM188B Missense_Mutation p.P326L 0.27 tolerated(0.11) benign(0.004) TCGA-GF-A3OT-06 7 33388771 33388771 T C BBS9 Missense_Mutation p.F474S 0.25 deleterious(0) benign(0.353) TCGA-GF-A3OT-06 7 44073693 44073693 G A RASA4CP RNA 0.33 TCGA-GF-A3OT-06 7 44685012 44685012 C T OGDH Silent p.S103S 0.21 TCGA-GF-A3OT-06 7 45697426 45697426 G A ADCY1 Missense_Mutation p.D417N 0.27 deleterious(0) probably_damaging(0.968) TCGA-GF-A3OT-06 7 47853608 47853608 C A PKD1L1 Missense_Mutation p.G2365V 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-GF-A3OT-06 7 47970731 47970731 G A PKD1L1 Missense_Mutation p.P236L 0.16 tolerated_low_confidence(0.19) benign(0) TCGA-GF-A3OT-06 7 48316106 48316106 G A ABCA13 Silent p.E2281E 0.31 TCGA-GF-A3OT-06 7 50444451 50444451 C T IKZF1 Silent p.I127I 0.14 TCGA-GF-A3OT-06 7 5430119 5430119 C T TNRC18 Missense_Mutation p.G162R 0.20 benign(0.031) TCGA-GF-A3OT-06 7 66458322 66458322 A T SBDS Missense_Mutation p.I114N 0.24 tolerated(0.09) benign(0.026) TCGA-GF-A3OT-06 7 74211523 74211523 G A GTF2IRD2 Silent p.I776I 0.20 TCGA-GF-A3OT-06 7 82545844 82545844 C T PCLO Missense_Mutation p.E3820K 0.31 unknown(0) TCGA-GF-A3OT-06 7 93633539 93633539 G A BET1 5'UTR 0.15 TCGA-GF-A3OT-06 7 94049738 94049738 T A COL1A2 Missense_Mutation p.N723K 0.22 unknown(0) TCGA-GF-A3OT-06 7 99274027 99274027 C T CYP3A5 Intron 0.14 TCGA-GF-A3OT-06 7 99365994 99365994 G A CYP3A4 Missense_Mutation p.P218L 0.20 tolerated(0.11) benign(0.394) TCGA-GF-A3OT-06 8 10396060 10396060 G A PRSS55 Nonsense_Mutation p.W272* 0.19 TCGA-GF-A3OT-06 8 10755495 10755495 G A XKR6 Silent p.L631L 0.41 TCGA-GF-A3OT-06 8 110420353 110420353 G A PKHD1L1 Missense_Mutation p.G630E 0.23 deleterious(0) probably_damaging(0.958) TCGA-GF-A3OT-06 8 110457569 110457569 G A PKHD1L1 Missense_Mutation p.G1824E 0.15 deleterious(0.04) probably_damaging(0.995) TCGA-GF-A3OT-06 8 113259285 113259285 C T CSMD3 Missense_Mutation p.D3396N 0.16 tolerated(1) probably_damaging(0.988) TCGA-GF-A3OT-06 8 113697683 113697683 G A CSMD3 Nonsense_Mutation p.Q812* 0.14 TCGA-GF-A3OT-06 8 122626951 122626951 G A HAS2 Missense_Mutation p.R353C 0.35 deleterious(0.05) probably_damaging(1) TCGA-GF-A3OT-06 8 133935613 133935613 G A TG Missense_Mutation p.G1520D 0.16 tolerated(0.06) benign(0.263) TCGA-GF-A3OT-06 8 134232920 134232920 G A WISP1 Missense_Mutation p.G149D 0.12 deleterious(0.03) probably_damaging(0.973) TCGA-GF-A3OT-06 8 142178153 142178153 C T DENND3 Missense_Mutation p.H522Y 0.19 tolerated(0.16) probably_damaging(0.943) TCGA-GF-A3OT-06 8 144994260 144994260 C A PLEC Silent p.V3380V 0.39 TCGA-GF-A3OT-06 8 145138666 145138666 C T GPAA1 Missense_Mutation p.A139V 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-GF-A3OT-06 8 145138667 145138667 C T GPAA1 Silent p.A139A 0.24 TCGA-GF-A3OT-06 8 145619714 145619714 C T CPSF1 Silent p.T1208T 0.43 TCGA-GF-A3OT-06 8 16001121 16001121 C T MSR1 Splice_Site p.X327_splice 0.41 TCGA-GF-A3OT-06 8 17218782 17218782 C T MTMR7 Silent p.V104V 0.35 TCGA-GF-A3OT-06 8 17417986 17417986 C T SLC7A2 Missense_Mutation p.S523F 0.29 deleterious(0) possibly_damaging(0.847) TCGA-GF-A3OT-06 8 20110389 20110389 G A LZTS1 Silent p.S351S 0.44 TCGA-GF-A3OT-06 8 24365022 24365022 C T ADAM7 Silent p.I746I 0.13 TCGA-GF-A3OT-06 8 25708118 25708118 C T EBF2 Missense_Mutation p.G563E 0.14 deleterious_low_confidence(0) benign(0.188) TCGA-GF-A3OT-06 8 26722384 26722384 C T ADRA1A Missense_Mutation p.G35S 0.18 tolerated(0.33) benign(0.009) TCGA-GF-A3OT-06 8 2813131 2813131 C T CSMD1 Missense_Mutation p.G3325E 0.23 probably_damaging(1) TCGA-GF-A3OT-06 8 30407079 30407079 C T RBPMS 3'Flank 0.26 TCGA-GF-A3OT-06 8 37688326 37688326 C T GPR124 Silent p.L273L 0.38 TCGA-GF-A3OT-06 8 39535042 39535042 C T ADAM18 Missense_Mutation p.P540S 0.47 tolerated(0.1) probably_damaging(0.965) TCGA-GF-A3OT-06 8 39581320 39581320 C T ADAM18 Silent p.L691L 0.22 TCGA-GF-A3OT-06 8 39847305 39847306 GC - IDO2 Frame_Shift_Del p.R219Tfs*17 0.34 TCGA-GF-A3OT-06 8 40554830 40554830 G A ZMAT4 Nonsense_Mutation p.Q95* 0.20 TCGA-GF-A3OT-06 8 41566359 41566359 C T ANK1 Silent p.E678E 0.16 TCGA-GF-A3OT-06 8 55538745 55538745 C T RP1 Missense_Mutation p.S768F 0.39 tolerated(0.48) benign(0.002) TCGA-GF-A3OT-06 8 55540577 55540577 G A RP1 Missense_Mutation p.E1379K 0.13 tolerated(0.92) benign(0.093) TCGA-GF-A3OT-06 8 55542986 55542986 G A RP1 3'UTR 0.48 TCGA-GF-A3OT-06 8 59720330 59720330 C T TOX Silent p.R519R 0.15 TCGA-GF-A3OT-06 8 59727942 59727942 G A TOX Silent p.L449L 0.17 TCGA-GF-A3OT-06 8 87680300 87680300 A C CNGB3 Nonsense_Mutation p.L197* 0.40 TCGA-GF-A3OT-06 9 104238141 104238141 C T TMEM246 3'UTR 0.21 TCGA-GF-A3OT-06 9 104297796 104297796 A G RNF20 Missense_Mutation p.T31A 0.15 tolerated(0.24) benign(0.217) TCGA-GF-A3OT-06 9 112963442 112963442 C T C9orf152 Missense_Mutation p.G169E 0.26 tolerated(1) benign(0.025) TCGA-GF-A3OT-06 9 113148336 113148336 G A SVEP1 Missense_Mutation p.P3360L 0.15 probably_damaging(1) TCGA-GF-A3OT-06 9 113148337 113148337 G A SVEP1 Missense_Mutation p.P3360S 0.15 probably_damaging(1) TCGA-GF-A3OT-06 9 117185767 117185767 G A DFNB31 Missense_Mutation p.P485S 0.19 deleterious(0.02) probably_damaging(0.945) TCGA-GF-A3OT-06 9 118982375 118982375 G A PAPPA Nonsense_Mutation p.W693* 0.19 TCGA-GF-A3OT-06 9 119106834 119106834 C T PAPPA Silent p.F1208F 0.21 TCGA-GF-A3OT-06 9 119109484 119109484 G A PAPPA Silent p.L1320L 0.27 TCGA-GF-A3OT-06 9 119115986 119115986 A T PAPPA Nonsense_Mutation p.K1421* 0.25 TCGA-GF-A3OT-06 9 123334274 123334274 G A CDK5RAP2 Silent p.P35P 0.38 TCGA-GF-A3OT-06 9 123797169 123797169 G A C5 Missense_Mutation p.P166S 0.32 deleterious(0) probably_damaging(0.987) TCGA-GF-A3OT-06 9 125437562 125437562 G A OR1L3 Missense_Mutation p.D52N 0.19 tolerated(0.06) benign(0.021) TCGA-GF-A3OT-06 9 131038500 131038500 C T SWI5 Missense_Mutation p.R26W 0.15 deleterious_low_confidence(0.02) benign(0.002) TCGA-GF-A3OT-06 9 131133600 131133600 G A URM1 5'UTR 0.36 TCGA-GF-A3OT-06 9 131284944 131284944 C T GLE1 Intron 0.30 TCGA-GF-A3OT-06 9 131455163 131455163 C T SET Missense_Mutation p.P145L 0.12 deleterious(0.01) possibly_damaging(0.624) TCGA-GF-A3OT-06 9 131891325 131891325 C T PPP2R4 Missense_Mutation p.P93L 0.20 deleterious(0.05) possibly_damaging(0.798) TCGA-GF-A3OT-06 9 135944153 135944153 C T CEL Silent p.I333I 0.14 TCGA-GF-A3OT-06 9 137004918 137004918 C T WDR5 Intron 0.29 TCGA-GF-A3OT-06 9 139371256 139371256 G A SEC16A Missense_Mutation p.P271L 0.19 tolerated(0.8) benign(0) TCGA-GF-A3OT-06 9 139620491 139620491 G A FAM69B 3'Flank 0.15 TCGA-GF-A3OT-06 9 21481523 21481523 C T IFNE Silent p.R57R 0.23 TCGA-GF-A3OT-06 9 71549834 71549834 G A PIP5K1B Silent p.R410R 0.22 TCGA-GF-A3OT-06 9 84609948 84609948 G A SPATA31D1 Silent p.R1521R 0.17 TCGA-GF-A3OT-06 9 86518517 86518517 G A KIF27 Silent p.L306L 0.22 TCGA-GF-A3OT-06 9 90502088 90502088 G A SPATA31E1 Missense_Mutation p.G896R 0.36 tolerated(0.11) possibly_damaging(0.882) TCGA-GF-A3OT-06 9 90502089 90502089 G A SPATA31E1 Missense_Mutation p.G896E 0.35 tolerated(0.06) possibly_damaging(0.646) TCGA-GF-A3OT-06 X 105011435 105011435 C T IL1RAPL2 Silent p.I614I 0.22 TCGA-GF-A3OT-06 X 105193629 105193629 G A NRK Missense_Mutation p.M1473I 0.25 deleterious(0) benign(0.014) TCGA-GF-A3OT-06 X 106034423 106034423 G A RNF128 Missense_Mutation p.G371E 0.20 deleterious(0.04) possibly_damaging(0.788) TCGA-GF-A3OT-06 X 107838825 107838825 C T COL4A5 Missense_Mutation p.P504S 0.22 unknown(0) TCGA-GF-A3OT-06 X 114251824 114251824 G A IL13RA2 Silent p.F3F 0.23 TCGA-GF-A3OT-06 X 129149233 129149233 C T BCORL1 Silent p.L829L 0.23 TCGA-GF-A3OT-06 X 130410929 130410929 C T IGSF1 Silent p.V869V 0.35 TCGA-GF-A3OT-06 X 132439895 132439895 G A GPC4 Missense_Mutation p.R354C 0.32 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 X 133378813 133378813 G A CCDC160 5'UTR 0.27 TCGA-GF-A3OT-06 X 135431105 135431105 C T GPR112 Missense_Mutation p.P1747L 0.33 tolerated(0.22) benign(0.354) TCGA-GF-A3OT-06 X 142716798 142716798 G A SLITRK4 Silent p.F709F 0.33 TCGA-GF-A3OT-06 X 152981046 152981046 G A BCAP31 Missense_Mutation p.R165C 0.36 deleterious(0) probably_damaging(1) TCGA-GF-A3OT-06 X 153594930 153594930 C T FLNA Silent p.K355K 0.31 TCGA-GF-A3OT-06 X 20156729 20156729 T C EIF1AX Missense_Mutation p.K10E 0.29 deleterious(0) unknown(0) TCGA-GF-A3OT-06 X 27766345 27766345 G A DCAF8L2 Missense_Mutation p.D445N 0.22 deleterious(0) probably_damaging(0.999) TCGA-GF-A3OT-06 X 2951169 2951169 G A ARSH Missense_Mutation p.D478N 0.36 tolerated(0.19) benign(0.01) TCGA-GF-A3OT-06 X 35820590 35820590 G A MAGEB16 Missense_Mutation p.E93K 0.43 tolerated(0.28) benign(0.038) TCGA-GF-A3OT-06 X 36162748 36162748 C T CHDC2 Missense_Mutation p.S444L 0.34 tolerated_low_confidence(0.07) benign(0.009) TCGA-GF-A3OT-06 X 37026557 37026557 C T FAM47C Missense_Mutation p.P25L 0.17 tolerated(0.42) benign(0.308) TCGA-GF-A3OT-06 X 49851137 49851137 C T CLCN5 Silent p.L389L 0.25 TCGA-GF-A3OT-06 X 50089728 50089728 G A CCNB3 Missense_Mutation p.M1244I 0.17 deleterious(0) benign(0.398) TCGA-GF-A3OT-06 X 53563559 53563559 G A HUWE1 Silent p.I4069I 0.36 TCGA-GF-A3OT-06 X 73066348 73066348 G A XIST RNA 0.29 TCGA-GF-A3OT-06 X 77912994 77912994 G A ZCCHC5 Silent p.F308F 0.24 TCGA-GF-A4EO-06 10 117607464 117607464 C T ATRNL1 Missense_Mutation p.P1327L 0.15 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 10 127541130 127541130 G A DHX32 Missense_Mutation p.L392F 0.20 deleterious(0.04) benign(0.444) TCGA-GF-A4EO-06 10 15649691 15649691 G A ITGA8 Silent p.F583F 0.16 TCGA-GF-A4EO-06 10 30625816 30625816 G A MTPAP Silent p.S232S 0.22 TCGA-GF-A4EO-06 10 3827192 3827194 GGG - KLF6 In_Frame_Del p.P5del 0.12 TCGA-GF-A4EO-06 10 55569295 55569295 C T PCDH15 Missense_Mutation p.R1522K 0.10 benign(0) TCGA-GF-A4EO-06 10 84498390 84498390 C T NRG3 Silent p.S337S 0.06 TCGA-GF-A4EO-06 10 93610975 93610975 C T TNKS2 Silent p.I899I 0.17 TCGA-GF-A4EO-06 10 99531173 99531173 C T SFRP5 Missense_Mutation p.E140K 0.14 tolerated(0.22) benign(0.042) TCGA-GF-A4EO-06 11 110462842 110462842 G A ARHGAP20 Silent p.I334I 0.21 TCGA-GF-A4EO-06 11 120998597 120998597 C T TECTA Silent p.F637F 0.09 TCGA-GF-A4EO-06 11 124190055 124190055 G A OR8D2 Silent p.I13I 0.13 TCGA-GF-A4EO-06 11 124489453 124489453 C T PANX3 Silent p.S267S 0.14 TCGA-GF-A4EO-06 11 128842438 128842438 G A ARHGAP32 Silent p.P1307P 0.19 TCGA-GF-A4EO-06 11 130078485 130078485 C T ST14 Silent p.S725S 0.13 TCGA-GF-A4EO-06 11 133805541 133805541 G A IGSF9B Missense_Mutation p.P313L 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 11 36597709 36597709 G T RAG1 Missense_Mutation p.R952M 0.08 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GF-A4EO-06 11 397259 397259 G A PKP3 Missense_Mutation p.R253Q 0.23 deleterious(0.05) probably_damaging(0.997) TCGA-GF-A4EO-06 11 44130763 44130763 C T EXT2 Missense_Mutation p.H219Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-GF-A4EO-06 11 489971 489971 C T PTDSS2 Missense_Mutation p.H402Y 0.16 tolerated(0.32) benign(0.002) TCGA-GF-A4EO-06 11 4929004 4929004 C T OR51A7 Silent p.I135I 0.07 TCGA-GF-A4EO-06 11 4976233 4976233 C T OR51A2 Silent p.K237K 0.21 TCGA-GF-A4EO-06 11 55371061 55371061 G A OR4C11 Silent p.F263F 0.45 TCGA-GF-A4EO-06 11 55418674 55418674 C T OR4S2 Silent p.L99L 0.29 TCGA-GF-A4EO-06 11 562264 562264 G A RASSF7 Missense_Mutation p.E104K 0.21 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 11 58477684 58477684 G A GLYAT Intron 0.24 TCGA-GF-A4EO-06 11 60184160 60184160 G A MS4A14 Silent p.G606G 0.22 TCGA-GF-A4EO-06 11 65061712 65061712 C T POLA2 Silent p.L445L 0.23 TCGA-GF-A4EO-06 11 66264842 66264842 C T DPP3 Missense_Mutation p.P591L 0.24 deleterious(0.04) benign(0) TCGA-GF-A4EO-06 12 104081987 104081987 G A STAB2 Nonsense_Mutation p.W1013* 0.11 TCGA-GF-A4EO-06 12 11061571 11061571 G T TAS2R13 Silent p.L109L 0.17 TCGA-GF-A4EO-06 12 113327860 113327860 G A RPH3A Missense_Mutation p.R532Q 0.07 deleterious(0.02) benign(0.266) TCGA-GF-A4EO-06 12 119916930 119916930 G A CCDC60 Missense_Mutation p.G125R 0.19 tolerated(0.18) benign(0.022) TCGA-GF-A4EO-06 12 121416690 121416690 G A HNF1A Missense_Mutation p.G40E 0.09 tolerated_low_confidence(0.4) benign(0.079) TCGA-GF-A4EO-06 12 123011507 123011507 G A RSRC2 5'UTR 0.16 TCGA-GF-A4EO-06 12 123900324 123900324 G A RILPL2 3'UTR 0.14 TCGA-GF-A4EO-06 12 130922939 130922939 C A RIMBP2 Missense_Mutation p.G526C 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 12 18854514 18854514 T A PLCZ1 Intron 0.16 TCGA-GF-A4EO-06 12 21329737 21329737 C T SLCO1B1 Silent p.I129I 0.10 TCGA-GF-A4EO-06 12 25256967 25256967 C T LRMP Nonsense_Mutation p.R341* 0.15 TCGA-GF-A4EO-06 12 26636642 26636642 G A ITPR2 Missense_Mutation p.H2001Y 0.12 deleterious(0.03) possibly_damaging(0.806) TCGA-GF-A4EO-06 12 27148193 27148193 G A TM7SF3 Nonsense_Mutation p.Q223* 0.11 TCGA-GF-A4EO-06 12 27470855 27470855 C A STK38L Missense_Mutation p.P328T 0.15 tolerated(0.09) probably_damaging(0.987) TCGA-GF-A4EO-06 12 32136849 32136849 A G KIAA1551 Missense_Mutation p.E987G 0.28 deleterious(0.03) benign(0.046) TCGA-GF-A4EO-06 12 47172354 47172354 T G SLC38A4 Missense_Mutation p.D308A 0.24 tolerated(0.74) benign(0.001) TCGA-GF-A4EO-06 12 4919931 4919931 G A KCNA6 Missense_Mutation p.E242K 0.17 tolerated(0.87) benign(0.005) TCGA-GF-A4EO-06 12 53044203 53044203 C T KRT2 Silent p.L240L 0.09 TCGA-GF-A4EO-06 12 53818087 53818087 G A AMHR2 Missense_Mutation p.R22Q 0.07 deleterious(0) benign(0.238) TCGA-GF-A4EO-06 12 57865840 57865840 C T GLI1 Missense_Mutation p.A1106V 0.23 tolerated_low_confidence(0.15) benign(0.012) TCGA-GF-A4EO-06 12 9264781 9264781 C T A2M Missense_Mutation p.E153K 0.14 tolerated(0.71) benign(0.005) TCGA-GF-A4EO-06 13 32356877 32356877 G A RXFP2 Missense_Mutation p.G308R 0.12 tolerated(0.54) benign(0.038) TCGA-GF-A4EO-06 13 37269541 37269541 G A SERTM1 3'UTR 0.24 TCGA-GF-A4EO-06 13 60435649 60435649 C T DIAPH3 Missense_Mutation p.D877N 0.32 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 13 78293697 78293697 C T SLAIN1 Silent p.T55T 0.19 TCGA-GF-A4EO-06 14 100129300 100129300 C T HHIPL1 Silent p.F530F 0.24 TCGA-GF-A4EO-06 14 100615483 100615483 G A DEGS2 Missense_Mutation p.S216F 0.29 tolerated(0.08) possibly_damaging(0.832) TCGA-GF-A4EO-06 14 104570719 104570719 G A ASPG Missense_Mutation p.D278N 0.21 deleterious(0) possibly_damaging(0.501) TCGA-GF-A4EO-06 14 106780751 106780751 G A IGHV4-28 Missense_Mutation p.S38F 0.17 deleterious(0.02) benign(0.379) TCGA-GF-A4EO-06 14 22509297 22509297 G A TRAV20 Missense_Mutation p.E79K 0.25 tolerated(0.27) benign(0.005) TCGA-GF-A4EO-06 14 24655568 24655568 G A IPO4 Silent p.P310P 0.20 TCGA-GF-A4EO-06 14 32562715 32562715 A C ARHGAP5 Missense_Mutation p.N947T 0.26 tolerated(0.19) benign(0.017) TCGA-GF-A4EO-06 14 59789753 59789753 G A DAAM1 Missense_Mutation p.R195Q 0.12 deleterious(0) unknown(0) TCGA-GF-A4EO-06 14 92268634 92268634 G A TC2N Missense_Mutation p.P145S 0.24 tolerated(0.45) benign(0.004) TCGA-GF-A4EO-06 15 22368880 22368880 T A OR4M2 Missense_Mutation p.F102Y 0.11 tolerated(0.06) probably_damaging(0.91) TCGA-GF-A4EO-06 15 34047374 34047374 C T RYR3 Silent p.A2836A 0.23 TCGA-GF-A4EO-06 15 34382552 34382552 G A EMC7 Missense_Mutation p.S154L 0.13 tolerated(0.1) benign(0.136) TCGA-GF-A4EO-06 15 40675068 40675068 G A KNSTRN Missense_Mutation p.R11K 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-GF-A4EO-06 15 41166143 41166143 C T RHOV Silent p.L65L 0.10 TCGA-GF-A4EO-06 15 45397885 45397885 G A DUOX2 Missense_Mutation p.R764W 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 15 56209147 56209147 G A NEDD4 5'UTR 0.14 TCGA-GF-A4EO-06 15 90346958 90346958 G A ANPEP Missense_Mutation p.H453Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 16 19067983 19067983 C T TMC7 Missense_Mutation p.S664F 0.16 deleterious(0) probably_damaging(0.986) TCGA-GF-A4EO-06 16 2110709 2110709 C T TSC2 Silent p.I338I 0.28 TCGA-GF-A4EO-06 16 28975100 28975100 C T NFATC2IP Silent p.F392F 0.14 TCGA-GF-A4EO-06 16 3170085 3170085 C T ZNF205 Missense_Mutation p.P475L 0.07 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 16 4163889 4163889 G A ADCY9 Missense_Mutation p.L519F 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-GF-A4EO-06 16 4949237 4949237 C T PPL Missense_Mutation p.R252Q 0.07 tolerated(0.25) benign(0.015) TCGA-GF-A4EO-06 16 67681825 67681825 G A RLTPR Silent p.G345G 0.25 TCGA-GF-A4EO-06 16 70180091 70180091 C T PDPR Missense_Mutation p.A641V 0.12 tolerated(0.85) benign(0.006) TCGA-GF-A4EO-06 16 74657791 74657791 A G RFWD3 3'UTR 0.08 TCGA-GF-A4EO-06 16 7760719 7760719 G A RBFOX1 Missense_Mutation p.G410E 0.31 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 16 89805562 89805562 C T FANCA Silent p.R1382R 0.16 TCGA-GF-A4EO-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.15 tolerated(0.37) benign(0.005) TCGA-GF-A4EO-06 17 15522757 15522757 G A CDRT1 Missense_Mutation p.P24S 0.09 tolerated(0.16) benign(0.068) TCGA-GF-A4EO-06 17 16701577 16701577 C T CCDC144A 3'UTR 0.08 TCGA-GF-A4EO-06 17 29679304 29679304 C T NF1 Missense_Mutation p.S2496F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-GF-A4EO-06 17 36705365 36705365 G A SRCIN1 Missense_Mutation p.S1015F 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 17 36963033 36963033 G A CWC25 Missense_Mutation p.P296L 0.22 tolerated(0.07) benign(0.027) TCGA-GF-A4EO-06 17 38024573 38024573 C T ZPBP2 5'UTR 0.14 TCGA-GF-A4EO-06 17 3833720 3833720 G A ATP2A3 Silent p.F873F 0.16 TCGA-GF-A4EO-06 17 42092295 42092295 C T TMEM101 Missense_Mutation p.R9Q 0.13 tolerated_low_confidence(0.05) possibly_damaging(0.776) TCGA-GF-A4EO-06 17 42333083 42333083 C T SLC4A1 Missense_Mutation p.M586I 0.11 tolerated(0.08) benign(0.001) TCGA-GF-A4EO-06 17 43226693 43226693 A C HEXIM1 Silent p.R46R 0.10 TCGA-GF-A4EO-06 17 43246735 43246735 C A HEXIM2 Silent p.P140P 0.17 TCGA-GF-A4EO-06 17 46214641 46214641 G A SKAP1 Missense_Mutation p.P346L 0.08 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 17 46685135 46685135 C T HOXB7 3'UTR 0.15 TCGA-GF-A4EO-06 17 46925686 46925686 T C CALCOCO2 Missense_Mutation p.Y120H 0.07 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 17 57094671 57094672 - GACA TRIM37 Frame_Shift_Ins p.Q791Lfs*6 0.17 TCGA-GF-A4EO-06 17 61910505 61910505 G A SMARCD2 Missense_Mutation p.P489L 0.26 tolerated(0.17) probably_damaging(0.997) TCGA-GF-A4EO-06 17 62045642 62045642 G A SCN4A Silent p.F259F 0.11 TCGA-GF-A4EO-06 17 62856286 62856286 C T LRRC37A3 Silent p.K1326K 0.15 TCGA-GF-A4EO-06 17 6331820 6331820 C T AIPL1 Missense_Mutation p.G95R 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-GF-A4EO-06 17 72246076 72246076 C T TTYH2 Missense_Mutation p.T311I 0.10 tolerated(0.21) benign(0.007) TCGA-GF-A4EO-06 17 74300977 74300977 G A QRICH2 Missense_Mutation p.R28W 0.07 deleterious(0.03) benign(0.296) TCGA-GF-A4EO-06 17 76134659 76134659 C T TMC8 Missense_Mutation p.H557Y 0.13 tolerated(0.13) possibly_damaging(0.548) TCGA-GF-A4EO-06 17 77043825 77043825 C T C1QTNF1 Silent p.F167F 0.13 TCGA-GF-A4EO-06 17 78083818 78083818 C T GAA Silent p.F467F 0.12 TCGA-GF-A4EO-06 17 79571669 79571669 G C NPLOC4 Missense_Mutation p.Q247E 0.12 deleterious(0) possibly_damaging(0.708) TCGA-GF-A4EO-06 17 79571670 79571670 G A NPLOC4 Silent p.N246N 0.12 TCGA-GF-A4EO-06 17 79687143 79687143 A G SLC25A10 3'UTR 0.08 TCGA-GF-A4EO-06 18 19395604 19395604 C T MIB1 Missense_Mutation p.H503Y 0.17 tolerated(0.61) benign(0.066) TCGA-GF-A4EO-06 18 28672084 28672084 A T DSC2 Missense_Mutation p.F112I 0.07 tolerated(0.12) benign(0.033) TCGA-GF-A4EO-06 18 2946178 2946178 T A LPIN2 Intron 0.30 TCGA-GF-A4EO-06 18 43437838 43437838 C T EPG5 Silent p.R2474R 0.11 TCGA-GF-A4EO-06 18 48335726 48335726 G A MRO Intron 0.11 TCGA-GF-A4EO-06 18 61160488 61160488 A C SERPINB5 Intron 0.33 TCGA-GF-A4EO-06 18 6958648 6958648 G A LAMA1 Nonsense_Mutation p.Q2598* 0.15 TCGA-GF-A4EO-06 18 76754968 76754968 G A SALL3 Missense_Mutation p.E993K 0.26 tolerated(0.21) benign(0.388) TCGA-GF-A4EO-06 19 15072794 15072794 G A SLC1A6 Intron 0.14 TCGA-GF-A4EO-06 19 16034682 16034682 G A CYP4F11 Silent p.F286F 0.20 TCGA-GF-A4EO-06 19 17370466 17370466 G A USHBP1 Missense_Mutation p.P282S 0.05 tolerated(0.54) benign(0.01) TCGA-GF-A4EO-06 19 35769606 35769606 C G USF2 Missense_Mutation p.R245G 0.14 deleterious(0) probably_damaging(0.996) TCGA-GF-A4EO-06 19 38633303 38633303 C T SIPA1L3 Silent p.S1162S 0.17 TCGA-GF-A4EO-06 19 39327341 39327341 G A HNRNPL 3'UTR 0.17 TCGA-GF-A4EO-06 19 43411267 43411267 G A PSG6 Silent p.L349L 0.06 TCGA-GF-A4EO-06 19 43920569 43920569 G A TEX101 Missense_Mutation p.G103R 0.06 tolerated(0.34) possibly_damaging(0.617) TCGA-GF-A4EO-06 19 4538673 4538673 G A LRG1 Missense_Mutation p.S108L 0.23 deleterious(0.03) possibly_damaging(0.56) TCGA-GF-A4EO-06 19 49005811 49005811 G A LMTK3 Nonsense_Mutation p.Q254* 0.19 TCGA-GF-A4EO-06 19 49564986 49564986 C T NTF4 Missense_Mutation p.R90H 0.11 tolerated(1) benign(0.256) TCGA-GF-A4EO-06 19 54254528 54254528 C T MIR522 RNA 0.22 TCGA-GF-A4EO-06 19 55144048 55144048 C T LILRB1 Silent p.F265F 0.10 TCGA-GF-A4EO-06 19 55494363 55494363 C T NLRP2 Missense_Mutation p.L433F 0.16 deleterious(0) probably_damaging(0.953) TCGA-GF-A4EO-06 19 56499245 56499245 G A NLRP8 Missense_Mutation p.G1038E 0.07 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-GF-A4EO-06 19 58639819 58639819 G A ZNF329 Missense_Mutation p.A351V 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 19 8181640 8181640 G A FBN3 Silent p.G1210G 0.05 TCGA-GF-A4EO-06 1 103488353 103488353 G A COL11A1 Missense_Mutation p.P397L 0.10 possibly_damaging(0.594) TCGA-GF-A4EO-06 1 103488354 103488354 G A COL11A1 Missense_Mutation p.P397S 0.09 benign(0.205) TCGA-GF-A4EO-06 1 109268613 109268613 C T FNDC7 Silent p.F366F 0.17 TCGA-GF-A4EO-06 1 11008787 11008787 C T C1orf127 Missense_Mutation p.E469K 0.10 tolerated(0.5) possibly_damaging(0.833) TCGA-GF-A4EO-06 1 12460320 12460320 C T VPS13D Missense_Mutation p.T3906I 0.18 benign(0.001) TCGA-GF-A4EO-06 1 12941867 12941867 G A PRAMEF4 Missense_Mutation p.P228L 0.18 tolerated(0.27) probably_damaging(0.999) TCGA-GF-A4EO-06 1 1387781 1387781 C T ATAD3C Silent p.A63A 0.16 TCGA-GF-A4EO-06 1 149878224 149878224 C T SV2A Silent p.K621K 0.11 TCGA-GF-A4EO-06 1 152382094 152382094 G A CRNN Silent p.S488S 0.25 TCGA-GF-A4EO-06 1 153043049 153043049 G A SPRR2B 3'UTR 0.27 TCGA-GF-A4EO-06 1 154296916 154296916 A C AQP10 Missense_Mutation p.E289A 0.15 tolerated(0.32) benign(0.002) TCGA-GF-A4EO-06 1 178427117 178427117 C T RASAL2 Missense_Mutation p.P897L 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-GF-A4EO-06 1 179086514 179086514 G A ABL2 Missense_Mutation p.P454L 0.15 deleterious(0.01) probably_damaging(1) TCGA-GF-A4EO-06 1 180905209 180905209 C T KIAA1614 Nonsense_Mutation p.Q722* 0.21 TCGA-GF-A4EO-06 1 190195433 190195433 A C BRINP3 Missense_Mutation p.L247R 0.26 deleterious(0) probably_damaging(0.998) TCGA-GF-A4EO-06 1 196920077 196920077 G A CFHR2 Missense_Mutation p.G117R 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 1 203148912 203148912 C T CHI3L1 Missense_Mutation p.D330N 0.11 tolerated(0.63) possibly_damaging(0.875) TCGA-GF-A4EO-06 1 21014160 21014160 G A KIF17 Silent p.F553F 0.29 TCGA-GF-A4EO-06 1 222906053 222906053 C T BROX Silent p.S411S 0.23 TCGA-GF-A4EO-06 1 227843163 227843163 C T ZNF678 Silent p.P404P 0.10 TCGA-GF-A4EO-06 1 236389792 236389792 C T ERO1LB Missense_Mutation p.G277R 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 1 236889312 236889312 C T ACTN2 Silent p.F176F 0.22 TCGA-GF-A4EO-06 1 24669225 24669225 C T GRHL3 Silent p.F416F 0.16 TCGA-GF-A4EO-06 1 24669226 24669226 C T GRHL3 Missense_Mutation p.R417W 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 1 247592886 247592886 G A NLRP3 Splice_Site p.X719_splice 0.05 TCGA-GF-A4EO-06 1 248224888 248224888 G A OR2L3 Missense_Mutation p.R302Q 0.16 deleterious(0.02) benign(0.087) TCGA-GF-A4EO-06 1 28144359 28144359 T G STX12 Intron 0.12 TCGA-GF-A4EO-06 1 91728141 91728141 G A HFM1 Missense_Mutation p.S1328L 0.21 deleterious_low_confidence(0.04) benign(0.009) TCGA-GF-A4EO-06 1 94669546 94669546 C T ARHGAP29 Silent p.L234L 0.08 TCGA-GF-A4EO-06 20 17923826 17923826 G A SNX5 Silent p.F364F 0.22 TCGA-GF-A4EO-06 20 19677497 19677497 C T SLC24A3 Silent p.F516F 0.06 TCGA-GF-A4EO-06 20 23065889 23065889 C T CD93 Missense_Mutation p.G314E 0.27 tolerated(1) benign(0.001) TCGA-GF-A4EO-06 20 35661126 35661126 T C RBL1 Missense_Mutation p.H775R 0.25 tolerated(0.53) benign(0.017) TCGA-GF-A4EO-06 20 45194949 45194949 G A SLC13A3 Silent p.I471I 0.11 TCGA-GF-A4EO-06 20 61143493 61143493 G A C20orf166 5'Flank 0.24 TCGA-GF-A4EO-06 21 11039045 11039045 G A BAGE2 RNA 0.03 TCGA-GF-A4EO-06 21 45499915 45499915 C T TRAPPC10 Missense_Mutation p.L544F 0.07 deleterious(0.01) probably_damaging(0.957) TCGA-GF-A4EO-06 22 20780200 20780200 G A SCARF2 Missense_Mutation p.S693F 0.26 deleterious(0.05) benign(0.154) TCGA-GF-A4EO-06 22 30951822 30951822 C T GAL3ST1 Silent p.R130R 0.22 TCGA-GF-A4EO-06 22 41556650 41556650 C T EP300 Missense_Mutation p.H1199Y 0.27 benign(0.076) TCGA-GF-A4EO-06 22 46653813 46653813 C T PKDREJ Missense_Mutation p.E1803K 0.26 tolerated(0.35) benign(0.026) TCGA-GF-A4EO-06 2 107459975 107459975 G A ST6GAL2 Silent p.P153P 0.17 TCGA-GF-A4EO-06 2 107459976 107459976 G A ST6GAL2 Missense_Mutation p.P153L 0.17 benign(0.007) TCGA-GF-A4EO-06 2 122160219 122160219 T A CLASP1 Intron 0.11 TCGA-GF-A4EO-06 2 135076304 135076304 C T MGAT5 Silent p.L189L 0.10 TCGA-GF-A4EO-06 2 136566278 136566278 G A LCT Silent p.I1213I 0.10 TCGA-GF-A4EO-06 2 152419208 152419208 G A NEB Nonsense_Mutation p.R6270* 0.15 TCGA-GF-A4EO-06 2 152426873 152426873 C T NEB Missense_Mutation p.G5718R 0.12 probably_damaging(1) TCGA-GF-A4EO-06 2 158142526 158142526 G A GALNT5 Splice_Site p.X541_splice 0.09 TCGA-GF-A4EO-06 2 166848606 166848606 C T SCN1A Missense_Mutation p.D1727N 0.11 deleterious(0.02) benign(0.413) TCGA-GF-A4EO-06 2 179397570 179397570 C T TTN Missense_Mutation p.R34591Q 0.10 TCGA-GF-A4EO-06 2 179435770 179435770 G A TTN Missense_Mutation p.P25030L 0.14 TCGA-GF-A4EO-06 2 192818454 192818454 C T TMEFF2 Missense_Mutation p.G327R 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 2 207172265 207172265 G T ZDBF2 Missense_Mutation p.G1005C 0.15 deleterious(0.01) benign(0.332) TCGA-GF-A4EO-06 2 215823761 215823761 G A ABCA12 Nonsense_Mutation p.Q1976* 0.09 TCGA-GF-A4EO-06 2 215890426 215890426 G A ABCA12 Missense_Mutation p.P420S 0.14 tolerated(0.94) benign(0.001) TCGA-GF-A4EO-06 2 227942739 227942739 G A COL4A4 Missense_Mutation p.P620S 0.25 probably_damaging(0.96) TCGA-GF-A4EO-06 2 233785062 233785062 C T NGEF Missense_Mutation p.D254N 0.18 tolerated(0.17) benign(0.178) TCGA-GF-A4EO-06 2 241569895 241569895 C T GPR35 Missense_Mutation p.P207S 0.11 tolerated(1) benign(0) TCGA-GF-A4EO-06 2 56603051 56603051 C T CCDC85A Missense_Mutation p.P518L 0.08 deleterious_low_confidence(0) benign(0.057) TCGA-GF-A4EO-06 2 71592656 71592656 A T ZNF638 Silent p.S605S 0.11 TCGA-GF-A4EO-06 2 71592657 71592657 C T ZNF638 Missense_Mutation p.P606S 0.12 tolerated(0.23) benign(0.014) TCGA-GF-A4EO-06 2 86305050 86305050 C T POLR1A Missense_Mutation p.D438N 0.06 tolerated(0.79) probably_damaging(0.992) TCGA-GF-A4EO-06 2 8871768 8871768 G A KIDINS220 Silent p.S1466S 0.11 TCGA-GF-A4EO-06 3 100015034 100015034 C T TBC1D23 Missense_Mutation p.P264L 0.15 deleterious(0) possibly_damaging(0.54) TCGA-GF-A4EO-06 3 105238943 105238943 G A ALCAM Missense_Mutation p.G36R 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 3 105238944 105238944 G A ALCAM Missense_Mutation p.G36E 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 3 111732401 111732401 C T TAGLN3 3'UTR 0.14 TCGA-GF-A4EO-06 3 120764346 120764346 C T STXBP5L Missense_Mutation p.P145L 0.07 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 3 121409694 121409694 A G GOLGB1 Silent p.F2839F 0.19 TCGA-GF-A4EO-06 3 124415047 124415047 C A AC080008.1 3'Flank 0.10 TCGA-GF-A4EO-06 3 127325638 127325638 C T MCM2 Missense_Mutation p.P360L 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 3 130284021 130284021 C T COL6A6 Missense_Mutation p.S282L 0.11 tolerated(0.65) possibly_damaging(0.661) TCGA-GF-A4EO-06 3 132437903 132437903 G A NPHP3 Missense_Mutation p.A202V 0.18 deleterious(0.04) benign(0.282) TCGA-GF-A4EO-06 3 133670154 133670154 C T SLCO2A1 Nonsense_Mutation p.W253* 0.15 TCGA-GF-A4EO-06 3 136573417 136573417 G A SLC35G2 Missense_Mutation p.E39K 0.18 deleterious(0.01) benign(0.285) TCGA-GF-A4EO-06 3 157920993 157920993 G A RSRC1 Silent p.K151K 0.17 TCGA-GF-A4EO-06 3 157920994 157920994 G A RSRC1 Missense_Mutation p.D152N 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-GF-A4EO-06 3 17279757 17279757 G A TBC1D5 Missense_Mutation p.P496S 0.10 tolerated(0.12) benign(0.005) TCGA-GF-A4EO-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.17 deleterious(0) probably_damaging(0.992) TCGA-GF-A4EO-06 3 190026141 190026141 G A CLDN1 Silent p.P187P 0.15 TCGA-GF-A4EO-06 3 27326100 27326100 T G NEK10 Silent p.V669V 0.07 TCGA-GF-A4EO-06 3 45867638 45867638 C T LZTFL1 3'UTR 0.23 TCGA-GF-A4EO-06 3 49692834 49692834 C T BSN Missense_Mutation p.P1949S 0.10 unknown(0) TCGA-GF-A4EO-06 3 52402787 52402787 G A DNAH1 Silent p.R1932R 0.14 TCGA-GF-A4EO-06 3 52507758 52507758 C T NISCH Silent p.H226H 0.15 TCGA-GF-A4EO-06 3 57494906 57494906 G C DNAH12 Missense_Mutation p.S168W 0.18 tolerated(0.48) benign(0) TCGA-GF-A4EO-06 3 66433544 66433544 C A LRIG1 Missense_Mutation p.G785C 0.08 tolerated(0.06) benign(0.443) TCGA-GF-A4EO-06 3 97887590 97887590 G A OR5H15 Missense_Mutation p.G16E 0.10 deleterious(0.01) probably_damaging(1) TCGA-GF-A4EO-06 3 97983846 97983846 A C OR5H6 Missense_Mutation p.T240P 0.29 deleterious(0) probably_damaging(0.932) TCGA-GF-A4EO-06 4 100264207 100264207 G A ADH1C Silent p.T191T 0.14 TCGA-GF-A4EO-06 4 110662161 110662161 C T CFI Missense_Mutation p.G547E 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 4 120528376 120528376 C T PDE5A Missense_Mutation p.E77K 0.16 tolerated(0.44) benign(0.085) TCGA-GF-A4EO-06 4 148463699 148463699 A G EDNRA Missense_Mutation p.I405V 0.12 tolerated(0.64) benign(0.001) TCGA-GF-A4EO-06 4 15444102 15444102 G A C1QTNF7 Silent p.G190G 0.20 TCGA-GF-A4EO-06 4 166946521 166946521 C T TLL1 Missense_Mutation p.P366S 0.07 deleterious(0.04) possibly_damaging(0.739) TCGA-GF-A4EO-06 4 175896782 175896782 C T ADAM29 Missense_Mutation p.P36S 0.19 deleterious(0) probably_damaging(0.996) TCGA-GF-A4EO-06 4 1944036 1944036 T A WHSC1 Intron 0.13 TCGA-GF-A4EO-06 4 5960966 5960966 C T C4orf50 3'UTR 0.15 TCGA-GF-A4EO-06 4 77053728 77053728 T C NUP54 Silent p.R285R 0.04 TCGA-GF-A4EO-06 4 87967994 87967994 C T AFF1 Missense_Mutation p.P103S 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-GF-A4EO-06 4 87967995 87967995 C T AFF1 Missense_Mutation p.P103L 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-GF-A4EO-06 4 88234997 88234997 A G HSD17B13 Missense_Mutation p.F225L 0.16 tolerated(0.1) benign(0.301) TCGA-GF-A4EO-06 4 88533573 88533573 G A DSPP Missense_Mutation p.E79K 0.18 possibly_damaging(0.784) TCGA-GF-A4EO-06 5 11364957 11364957 G A CTNND2 Missense_Mutation p.P408L 0.14 tolerated(0.17) benign(0.007) TCGA-GF-A4EO-06 5 122135408 122135408 T C SNX2 Missense_Mutation p.L83S 0.14 tolerated(0.1) probably_damaging(1) TCGA-GF-A4EO-06 5 122748110 122748110 G A CEP120 Missense_Mutation p.P149L 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-GF-A4EO-06 5 1254494 1254494 G C TERT Nonsense_Mutation p.S1095* 0.06 TCGA-GF-A4EO-06 5 13737583 13737583 G A DNAH5 Missense_Mutation p.H3745Y 0.08 benign(0.415) TCGA-GF-A4EO-06 5 140166954 140166954 G A PCDHA1 Missense_Mutation p.R360K 0.24 tolerated_low_confidence(0.57) benign(0.003) TCGA-GF-A4EO-06 5 140215379 140215379 G A PCDHA7 Missense_Mutation p.G471S 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GF-A4EO-06 5 140242241 140242241 C T AC005609.1 3'UTR 0.39 TCGA-GF-A4EO-06 5 140347863 140347863 G A PCDHAC2 Silent p.V504V 0.17 TCGA-GF-A4EO-06 5 140573286 140573286 G A PCDHB10 Silent p.E387E 0.16 TCGA-GF-A4EO-06 5 140751522 140751522 G A PCDHGB3 Missense_Mutation p.D521N 0.05 deleterious(0) probably_damaging(0.992) TCGA-GF-A4EO-06 5 145246099 145246099 C T GRXCR2 Missense_Mutation p.A177T 0.08 tolerated(0.6) benign(0.001) TCGA-GF-A4EO-06 5 149216095 149216095 G T PPARGC1B Missense_Mutation p.D693Y 0.18 deleterious(0) probably_damaging(0.974) TCGA-GF-A4EO-06 5 1495002 1495002 G A LPCAT1 Silent p.I102I 0.40 TCGA-GF-A4EO-06 5 150922250 150922250 C T FAT2 Missense_Mutation p.G2813E 0.16 probably_damaging(1) TCGA-GF-A4EO-06 5 154395223 154395223 C T KIF4B Missense_Mutation p.L602F 0.08 deleterious(0) probably_damaging(0.997) TCGA-GF-A4EO-06 5 161520910 161520910 C T GABRG2 Missense_Mutation p.P62S 0.12 tolerated(0.47) benign(0.258) TCGA-GF-A4EO-06 5 176764757 176764757 G A LMAN2 Missense_Mutation p.H155Y 0.21 tolerated(1) benign(0.297) TCGA-GF-A4EO-06 5 177163602 177163602 C T FAM153A Silent p.G137G 0.20 TCGA-GF-A4EO-06 5 38904526 38904526 G A OSMR Silent p.A402A 0.12 TCGA-GF-A4EO-06 5 41004506 41004506 C T MROH2B Missense_Mutation p.R1379Q 0.16 tolerated(0.08) benign(0.109) TCGA-GF-A4EO-06 5 45262400 45262400 C T HCN1 Missense_Mutation p.E766K 0.25 tolerated_low_confidence(0.5) benign(0.052) TCGA-GF-A4EO-06 5 68805531 68805531 G A OCLN Missense_Mutation p.G205E 0.18 deleterious(0) probably_damaging(0.983) TCGA-GF-A4EO-06 5 79374919 79374919 G A THBS4 Silent p.G783G 0.13 TCGA-GF-A4EO-06 5 90136501 90136501 G A GPR98 Missense_Mutation p.R5573K 0.15 benign(0.364) TCGA-GF-A4EO-06 6 107392016 107392016 A G BEND3 Missense_Mutation p.Y127H 0.21 tolerated_low_confidence(0.05) probably_damaging(0.949) TCGA-GF-A4EO-06 6 121629166 121629166 C T TBC1D32 Missense_Mutation p.E216K 0.25 tolerated(1) benign(0.013) TCGA-GF-A4EO-06 6 129571259 129571259 C T LAMA2 Silent p.L595L 0.22 TCGA-GF-A4EO-06 6 133783544 133783544 C T EYA4 Missense_Mutation p.S170L 0.21 deleterious(0.02) possibly_damaging(0.708) TCGA-GF-A4EO-06 6 135644312 135644312 C T AHI1 Missense_Mutation p.V1106M 0.32 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 6 136597142 136597142 G A BCLAF1 Silent p.D507D 0.08 TCGA-GF-A4EO-06 6 139487974 139487974 G A HECA Silent p.T275T 0.17 TCGA-GF-A4EO-06 6 144263749 144263749 C T PLAGL1 Silent p.E68E 0.34 TCGA-GF-A4EO-06 6 161087356 161087356 C T LPA 5'UTR 0.28 TCGA-GF-A4EO-06 6 26509404 26509404 G A BTN1A1 3'UTR 0.17 TCGA-GF-A4EO-06 6 29430268 29430268 C T OR2H1 Missense_Mutation p.S241F 0.09 deleterious(0) benign(0.2) TCGA-GF-A4EO-06 6 32165331 32165331 T C NOTCH4 Silent p.E1599E 0.08 TCGA-GF-A4EO-06 6 32165333 32165333 C T NOTCH4 Missense_Mutation p.E1599K 0.08 tolerated(0.11) benign(0.002) TCGA-GF-A4EO-06 6 39046769 39046769 C T GLP1R Silent p.L307L 0.16 TCGA-GF-A4EO-06 6 47649925 47649925 C T GPR111 Missense_Mutation p.L544F 0.13 tolerated(0.75) probably_damaging(1) TCGA-GF-A4EO-06 6 49425443 49425443 G A MUT Silent p.S238S 0.20 TCGA-GF-A4EO-06 6 51799086 51799086 G A PKHD1 Silent p.I1981I 0.15 TCGA-GF-A4EO-06 6 54805466 54805466 C T FAM83B Missense_Mutation p.S566L 0.12 deleterious(0) probably_damaging(0.962) TCGA-GF-A4EO-06 6 83076071 83076071 G A TPBG 3'UTR 0.18 TCGA-GF-A4EO-06 6 83839879 83839879 T G DOPEY1 Silent p.T793T 0.26 TCGA-GF-A4EO-06 6 90660781 90660781 C T BACH2 Silent p.T348T 0.24 TCGA-GF-A4EO-06 7 101183320 101183320 G A COL26A1 Silent p.T198T 0.22 TCGA-GF-A4EO-06 7 107732858 107732858 C T LAMB4 Missense_Mutation p.G492R 0.33 deleterious(0.04) possibly_damaging(0.833) TCGA-GF-A4EO-06 7 120428827 120428827 C A TSPAN12 Missense_Mutation p.W246L 0.05 tolerated(0.09) possibly_damaging(0.64) TCGA-GF-A4EO-06 7 127225175 127225175 A C GCC1 Missense_Mutation p.I21R 0.34 deleterious(0) possibly_damaging(0.794) TCGA-GF-A4EO-06 7 128494173 128494173 C T FLNC Silent p.S2210S 0.20 TCGA-GF-A4EO-06 7 131189231 131189231 C T PODXL Missense_Mutation p.G506S 0.38 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 7 133986832 133986832 G A SLC35B4 Silent p.A125A 0.37 TCGA-GF-A4EO-06 7 136699738 136699738 C T CHRM2 Silent p.I42I 0.32 TCGA-GF-A4EO-06 7 140244315 140244315 A G DENND2A Intron 0.50 TCGA-GF-A4EO-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-GF-A4EO-06 7 140508753 140508753 T C BRAF Missense_Mutation p.K183E 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 7 143657506 143657506 C T OR2F1 Missense_Mutation p.S148F 0.46 deleterious(0.01) probably_damaging(0.918) TCGA-GF-A4EO-06 7 150554434 150554434 C T AOC1 Silent p.P292P 0.44 TCGA-GF-A4EO-06 7 150905077 150905077 C T ABCF2 3'UTR 0.33 TCGA-GF-A4EO-06 7 150905078 150905078 C T ABCF2 3'UTR 0.32 TCGA-GF-A4EO-06 7 155534523 155534523 C T RBM33 Missense_Mutation p.S687F 0.14 deleterious(0.01) unknown(0) TCGA-GF-A4EO-06 7 21658840 21658840 G A DNAH11 Silent p.K1464K 0.15 TCGA-GF-A4EO-06 7 31920444 31920444 C T PDE1C Missense_Mutation p.R113K 0.17 tolerated(0.57) benign(0.175) TCGA-GF-A4EO-06 7 35284637 35284637 C T TBX20 Missense_Mutation p.G193D 0.12 deleterious(0) probably_damaging(0.974) TCGA-GF-A4EO-06 7 70254743 70254743 C T AUTS2 Silent p.V847V 0.14 TCGA-GF-A4EO-06 7 73021984 73021984 C T MLXIPL Missense_Mutation p.S140N 0.10 tolerated(0.82) probably_damaging(0.989) TCGA-GF-A4EO-06 7 7571154 7571154 G A COL28A1 Missense_Mutation p.P169L 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 7 91855955 91855955 C T KRIT1 Missense_Mutation p.G344E 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A4EO-06 8 133044280 133044280 G A OC90 Silent p.F293F 0.15 TCGA-GF-A4EO-06 8 133981769 133981769 C T TG Missense_Mutation p.S1977F 0.19 deleterious(0) probably_damaging(0.99) TCGA-GF-A4EO-06 8 139380210 139380210 C T FAM135B Missense_Mutation p.G6E 0.15 deleterious(0) probably_damaging(0.996) TCGA-GF-A4EO-06 8 27516581 27516581 C T SCARA3 Silent p.H298H 0.06 TCGA-GF-A4EO-06 8 41791256 41791256 G A KAT6A Silent p.V1494V 0.18 TCGA-GF-A4EO-06 8 43212112 43212112 C T POTEA RNA 0.19 TCGA-GF-A4EO-06 8 56860176 56860176 G A LYN Splice_Site p.X60_splice 0.18 TCGA-GF-A4EO-06 8 77763619 77763619 G A ZFHX4 Missense_Mutation p.E1488K 0.09 benign(0.005) TCGA-GF-A4EO-06 8 90937747 90937747 A T OSGIN2 Missense_Mutation p.D546V 0.24 deleterious_low_confidence(0) benign(0.012) TCGA-GF-A4EO-06 9 100857210 100857210 C T TRIM14 Silent p.K213K 0.14 TCGA-GF-A4EO-06 9 107361423 107361423 G A OR13C5 Missense_Mutation p.T91I 0.26 deleterious(0.02) possibly_damaging(0.851) TCGA-GF-A4EO-06 9 116224472 116224472 C T RGS3 Nonsense_Mutation p.Q136* 0.15 TCGA-GF-A4EO-06 9 131847367 131847367 G A DOLPP1 Silent p.Q81Q 0.18 TCGA-GF-A4EO-06 9 21971153 21971153 C A CDKN2A Nonsense_Mutation p.E69* 0.16 TCGA-GF-A4EO-06 9 37746354 37746354 T C FRMPD1 Missense_Mutation p.V1442A 0.36 tolerated(0.67) benign(0.005) TCGA-GF-A4EO-06 9 78804140 78804140 G A PCSK5 Splice_Site p.X837_splice 0.20 TCGA-GF-A4EO-06 9 8501020 8501020 G A PTPRD Missense_Mutation p.P621L 0.10 tolerated(0.41) unknown(0) TCGA-GF-A4EO-06 9 92020386 92020386 C T SEMA4D 5'UTR 0.18 TCGA-GF-A4EO-06 9 92020387 92020387 C T SEMA4D 5'UTR 0.18 TCGA-GF-A4EO-06 9 95043142 95043142 G A IARS Missense_Mutation p.P211S 0.30 deleterious(0.03) probably_damaging(0.98) TCGA-GF-A4EO-06 9 97522204 97522204 C T C9orf3 Missense_Mutation p.L47F 0.15 tolerated(0.95) benign(0.008) TCGA-GF-A4EO-06 X 102612729 102612729 C T WBP5 Silent p.A39A 0.27 TCGA-GF-A4EO-06 X 103499518 103499518 G A ESX1 Missense_Mutation p.R5C 0.09 deleterious_low_confidence(0.04) benign(0.34) TCGA-GF-A4EO-06 X 106888463 106888463 G A PRPS1 Missense_Mutation p.R196Q 0.09 deleterious(0) possibly_damaging(0.905) TCGA-GF-A4EO-06 X 108926080 108926080 G A ACSL4 Missense_Mutation p.R133C 0.13 tolerated(0.12) benign(0.002) TCGA-GF-A4EO-06 X 109694431 109694431 C A RGAG1 Missense_Mutation p.L196I 0.16 tolerated(0.12) possibly_damaging(0.629) TCGA-GF-A4EO-06 X 130409481 130409481 G C IGSF1 Missense_Mutation p.P1057R 0.11 tolerated(0.17) possibly_damaging(0.899) TCGA-GF-A4EO-06 X 135638635 135638635 G A VGLL1 Silent p.G238G 0.09 TCGA-GF-A4EO-06 X 142795153 142795153 C T SPANXN2 Silent p.Q175Q 0.10 TCGA-GF-A4EO-06 X 14625357 14625357 G A GLRA2 Missense_Mutation p.E228K 0.20 tolerated(0.11) benign(0.393) TCGA-GF-A4EO-06 X 154090036 154090036 G A F8 Missense_Mutation p.A2227V 0.07 deleterious(0) probably_damaging(0.999) TCGA-GF-A4EO-06 X 15568070 15568070 C T BMX Missense_Mutation p.H635Y 0.08 deleterious(0) benign(0.122) TCGA-GF-A4EO-06 X 22231043 22231043 G A PHEX Silent p.Q556Q 0.12 TCGA-GF-A4EO-06 X 22291917 22291917 C T ZNF645 Missense_Mutation p.S270L 0.10 tolerated(0.15) benign(0.266) TCGA-GF-A4EO-06 X 3241373 3241373 C T MXRA5 Missense_Mutation p.D785N 0.12 tolerated(0.13) possibly_damaging(0.484) TCGA-GF-A4EO-06 X 36083833 36083833 G A CHDC2 Missense_Mutation p.D6N 0.08 deleterious(0.05) benign(0.075) TCGA-GF-A4EO-06 X 49834536 49834536 G A CLCN5 Missense_Mutation p.D56N 0.26 tolerated(0.57) benign(0.029) TCGA-GF-A4EO-06 X 57146322 57146322 G A SPIN2B Silent p.F247F 0.07 TCGA-GF-A4EO-06 X 5811554 5811554 C T NLGN4X Silent p.T585T 0.08 TCGA-GF-A4EO-06 X 73524565 73524565 G C ZCCHC13 Missense_Mutation p.R155P 0.08 tolerated_low_confidence(0.24) benign(0) TCGA-GF-A6C8-06 10 101502996 101502996 C T CUTC Missense_Mutation p.R94C 0.47 tolerated(0.18) possibly_damaging(0.779) TCGA-GF-A6C8-06 10 1126377 1126377 C A WDR37 Silent p.S119S 0.23 TCGA-GF-A6C8-06 10 123845570 123845570 C T TACC2 Silent p.H1185H 0.33 TCGA-GF-A6C8-06 10 127824173 127824173 G T ADAM12 Silent p.L135L 0.49 TCGA-GF-A6C8-06 10 24896493 24896493 G A ARHGAP21 Silent p.N873N 0.30 TCGA-GF-A6C8-06 10 27059222 27059222 G A ABI1 Missense_Mutation p.P177L 0.32 deleterious(0) probably_damaging(0.942) TCGA-GF-A6C8-06 10 27703022 27703022 G A PTCHD3 Missense_Mutation p.S53F 0.29 deleterious_low_confidence(0.05) benign(0.065) TCGA-GF-A6C8-06 10 29812503 29812503 C T SVIL Missense_Mutation p.E1014K 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-GF-A6C8-06 10 45799175 45799175 G A OR13A1 Silent p.T232T 0.08 TCGA-GF-A6C8-06 10 69881390 69881390 C T MYPN Silent p.A65A 0.34 TCGA-GF-A6C8-06 10 73115924 73115924 T C SLC29A3 Missense_Mutation p.F233L 0.41 tolerated(0.06) possibly_damaging(0.792) TCGA-GF-A6C8-06 10 7765524 7765524 G A ITIH2 Missense_Mutation p.M326I 0.38 tolerated(0.32) possibly_damaging(0.842) TCGA-GF-A6C8-06 10 97096895 97096895 G A SORBS1 Missense_Mutation p.P1008S 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GF-A6C8-06 11 102737122 102737122 G A MMP12 RNA 0.33 TCGA-GF-A6C8-06 11 104877854 104877854 G A CASP5 Missense_Mutation p.T143I 0.28 tolerated(1) benign(0.001) TCGA-GF-A6C8-06 11 117303220 117303220 C T DSCAML1 Missense_Mutation p.G1736E 0.30 deleterious(0.05) benign(0.126) TCGA-GF-A6C8-06 11 121485609 121485609 G A SORL1 Missense_Mutation p.E1817K 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-GF-A6C8-06 11 129739548 129739548 G A NFRKB Silent p.V1149V 0.28 TCGA-GF-A6C8-06 11 134182351 134182351 C T GLB1L3 Missense_Mutation p.R466C 0.30 tolerated(0.18) benign(0.142) TCGA-GF-A6C8-06 11 16117606 16117606 A C SOX6 Missense_Mutation p.F346C 0.27 tolerated_low_confidence(0.16) benign(0.001) TCGA-GF-A6C8-06 11 18956521 18956521 C T MRGPRX1 5'UTR 0.50 TCGA-GF-A6C8-06 11 2799265 2799265 A C KCNQ1 Missense_Mutation p.K598Q 0.27 tolerated(0.97) possibly_damaging(0.557) TCGA-GF-A6C8-06 11 4389397 4389397 C T OR52B4 Silent p.G43G 0.28 TCGA-GF-A6C8-06 11 4511006 4511006 C T OR52K1 Silent p.I292I 0.30 TCGA-GF-A6C8-06 11 46893151 46893151 G A LRP4 Silent p.I1539I 0.24 TCGA-GF-A6C8-06 11 47283218 47283218 G C NR1H3 Missense_Mutation p.G277R 0.37 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 11 47431915 47431915 C T SLC39A13 Silent p.P90P 0.34 TCGA-GF-A6C8-06 11 47431916 47431916 C T SLC39A13 Silent p.L91L 0.35 TCGA-GF-A6C8-06 11 5566421 5566421 G A OR52H1 Silent p.F111F 0.29 TCGA-GF-A6C8-06 11 56757077 56757077 C T OR5AK2 Missense_Mutation p.S230F 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-GF-A6C8-06 11 57466407 57466407 C T ZDHHC5 Missense_Mutation p.P500L 0.33 deleterious(0) possibly_damaging(0.894) TCGA-GF-A6C8-06 11 59189503 59189503 C T OR5A2 Silent p.R308R 0.34 TCGA-GF-A6C8-06 11 59189504 59189504 C T OR5A2 Missense_Mutation p.R308K 0.34 tolerated(0.53) benign(0.002) TCGA-GF-A6C8-06 11 60703350 60703350 C T TMEM132A Silent p.S682S 0.28 TCGA-GF-A6C8-06 11 61978009 61978009 G A SCGB2A1 Silent p.G60G 0.28 TCGA-GF-A6C8-06 11 62327154 62327154 C T EEF1G Silent p.K437K 0.29 TCGA-GF-A6C8-06 11 62327156 62327156 T C EEF1G Missense_Mutation p.K437E 0.28 deleterious(0) probably_damaging(0.925) TCGA-GF-A6C8-06 11 66568121 66568121 C T C11orf80 Missense_Mutation p.H243Y 0.44 tolerated(0.09) benign(0.021) TCGA-GF-A6C8-06 11 67223828 67223828 G A CABP4 Silent p.R152R 0.31 TCGA-GF-A6C8-06 11 7070920 7070920 C T NLRP14 Silent p.F714F 0.36 TCGA-GF-A6C8-06 11 78440569 78440569 G A TENM4 Silent p.F1086F 0.31 TCGA-GF-A6C8-06 11 83497758 83497758 C T DLG2 Silent p.T600T 0.27 TCGA-GF-A6C8-06 11 96098255 96098255 G A CCDC82 Silent p.S423S 0.27 TCGA-GF-A6C8-06 11 9861129 9861129 C T SBF2 Missense_Mutation p.G1124E 0.42 deleterious(0.01) possibly_damaging(0.835) TCGA-GF-A6C8-06 12 104331549 104331549 T C HSP90B1 Missense_Mutation p.F274L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C8-06 12 11546638 11546638 C T PRB2 Missense_Mutation p.G125E 0.06 tolerated(0.09) unknown(0) TCGA-GF-A6C8-06 12 120586107 120586107 C T GCN1L1 Silent p.K1530K 0.34 TCGA-GF-A6C8-06 12 121837940 121837940 G A RNF34 5'UTR 0.42 TCGA-GF-A6C8-06 12 122618540 122618540 C T MLXIP Intron 0.18 TCGA-GF-A6C8-06 12 129559075 129559075 G A TMEM132D Missense_Mutation p.P882L 0.34 deleterious(0) possibly_damaging(0.847) TCGA-GF-A6C8-06 12 132198655 132198655 C T SFSWAP Silent p.Y86Y 0.39 TCGA-GF-A6C8-06 12 18890295 18890295 C T PLCZ1 Missense_Mutation p.R4K 0.34 tolerated(0.73) benign(0.001) TCGA-GF-A6C8-06 12 18891117 18891117 C T CAPZA3 5'UTR 0.32 TCGA-GF-A6C8-06 12 40001422 40001422 C T ABCD2 Silent p.R405R 0.38 TCGA-GF-A6C8-06 12 46598352 46598352 C T SLC38A1 Missense_Mutation p.G223E 0.49 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C8-06 12 4854623 4854623 G A GALNT8 Missense_Mutation p.E297K 0.39 deleterious(0) probably_damaging(0.964) TCGA-GF-A6C8-06 12 54741790 54741790 C T COPZ1 Silent p.I134I 0.54 TCGA-GF-A6C8-06 12 56031307 56031307 C T OR10P1 Missense_Mutation p.P211L 0.43 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 12 58145436 58145436 T A CDK4 Missense_Mutation p.K22M 0.42 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C8-06 12 6436547 6436547 G A PLEKHG6 Missense_Mutation p.G600R 0.36 tolerated(0.07) benign(0.015) TCGA-GF-A6C8-06 12 6886538 6886538 C T LAG3 Missense_Mutation p.S389F 0.35 deleterious(0) probably_damaging(0.921) TCGA-GF-A6C8-06 12 69743970 69743970 G A LYZ Silent p.G73G 0.43 TCGA-GF-A6C8-06 12 69968585 69968585 C T FRS2 Silent p.P459P 0.40 TCGA-GF-A6C8-06 12 7177235 7177235 C T C1S Silent p.F449F 0.27 TCGA-GF-A6C8-06 12 7586232 7586232 C T CD163L1 Silent p.V61V 0.32 TCGA-GF-A6C8-06 12 7639546 7639546 G A CD163 Missense_Mutation p.S696L 0.25 deleterious(0.01) benign(0.052) TCGA-GF-A6C8-06 12 8612272 8612272 C T CLEC6A Silent p.F67F 0.34 TCGA-GF-A6C8-06 12 86198969 86198969 C T RASSF9 Silent p.L273L 0.34 TCGA-GF-A6C8-06 13 110408607 110408607 A G IRS2 3'UTR 0.31 TCGA-GF-A6C8-06 13 113999239 113999239 T G GRTP1 Silent p.I167I 0.24 TCGA-GF-A6C8-06 13 25362155 25362155 G A RNF17 Missense_Mutation p.R214K 0.28 tolerated(0.92) benign(0) TCGA-GF-A6C8-06 13 27643394 27643394 A T USP12 3'UTR 0.41 TCGA-GF-A6C8-06 13 28626770 28626770 T A FLT3 Missense_Mutation p.M176L 0.23 tolerated(0.79) benign(0) TCGA-GF-A6C8-06 13 29599432 29599432 C T MTUS2 Silent p.S209S 0.15 TCGA-GF-A6C8-06 13 43358195 43358195 G A FAM216B Splice_Site 0.25 TCGA-GF-A6C8-06 13 46661877 46661877 T C CPB2 Intron 0.26 TCGA-GF-A6C8-06 13 53035087 53035087 T C CKAP2 Missense_Mutation p.V71A 0.33 tolerated(0.46) benign(0.004) TCGA-GF-A6C8-06 13 99446927 99446927 T C DOCK9 3'UTR 0.40 TCGA-GF-A6C8-06 14 105205672 105205672 G A ADSSL1 Silent p.K165K 0.50 TCGA-GF-A6C8-06 14 106330028 106330028 G A IGHJ5 Silent p.S15S 0.21 TCGA-GF-A6C8-06 14 106330029 106330029 G A IGHJ5 Missense_Mutation p.S15F 0.17 probably_damaging(0.954) TCGA-GF-A6C8-06 14 106452697 106452697 C T IGHV1-2 Missense_Mutation p.D109N 0.39 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C8-06 14 20403845 20403845 C T OR4K1 Missense_Mutation p.S7L 0.19 deleterious(0) possibly_damaging(0.604) TCGA-GF-A6C8-06 14 21549999 21549999 C T ARHGEF40 Missense_Mutation p.S991F 0.38 tolerated(0.39) possibly_damaging(0.868) TCGA-GF-A6C8-06 14 22204465 22204465 G A TRAV4 5'UTR 0.20 TCGA-GF-A6C8-06 14 23524290 23524290 G A CDH24 Silent p.T158T 0.29 TCGA-GF-A6C8-06 14 24706247 24706247 G A GMPR2 Intron 0.28 TCGA-GF-A6C8-06 14 33684474 33684474 A G NPAS3 Missense_Mutation p.K76R 0.33 deleterious(0.03) benign(0.292) TCGA-GF-A6C8-06 14 44975785 44975785 G A FSCB Missense_Mutation p.R136C 0.32 tolerated(1) benign(0.003) TCGA-GF-A6C8-06 14 52734581 52734581 G A PTGDR Missense_Mutation p.G17S 0.33 tolerated(0.05) possibly_damaging(0.563) TCGA-GF-A6C8-06 14 60193907 60193907 G A RTN1 Missense_Mutation p.R499W 0.31 deleterious(0) possibly_damaging(0.724) TCGA-GF-A6C8-06 14 70634091 70634091 C T SLC8A3 Missense_Mutation p.S350N 0.30 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 14 95081348 95081348 G A SERPINA3 Silent p.G190G 0.37 TCGA-GF-A6C8-06 15 20496630 20496630 G A CHEK2P2 RNA 0.14 TCGA-GF-A6C8-06 15 22864223 22864223 C T TUBGCP5 Silent p.F727F 0.29 TCGA-GF-A6C8-06 15 34649841 34649841 G A NUTM1 3'UTR 0.29 TCGA-GF-A6C8-06 15 43820230 43820230 C T MAP1A Missense_Mutation p.R2187C 0.25 probably_damaging(0.999) TCGA-GF-A6C8-06 15 43903181 43903181 A G STRC Missense_Mutation p.V1103A 0.20 tolerated(0.19) benign(0.005) TCGA-GF-A6C8-06 15 44864910 44864910 G A SPG11 Missense_Mutation p.S2105F 0.29 deleterious(0) probably_damaging(0.983) TCGA-GF-A6C8-06 15 44949363 44949363 C T SPG11 Missense_Mutation p.D267N 0.44 deleterious(0) probably_damaging(0.981) TCGA-GF-A6C8-06 15 50193395 50193395 G A ATP8B4 Missense_Mutation p.S728F 0.29 tolerated(0.27) benign(0.111) TCGA-GF-A6C8-06 15 67073705 67073705 C T SMAD6 Silent p.F441F 0.26 TCGA-GF-A6C8-06 15 67073822 67073822 C T SMAD6 Silent p.F480F 0.45 TCGA-GF-A6C8-06 15 68695368 68695368 C T ITGA11 Missense_Mutation p.G18E 0.35 deleterious(0.03) benign(0.049) TCGA-GF-A6C8-06 15 74883678 74883678 C T ARID3B Silent p.S356S 0.34 TCGA-GF-A6C8-06 15 75975074 75975074 C T CSPG4 Missense_Mutation p.D1553N 0.24 deleterious(0.02) possibly_damaging(0.467) TCGA-GF-A6C8-06 15 78403591 78403591 G A CIB2 Silent p.A38A 0.25 TCGA-GF-A6C8-06 15 81201506 81201506 G T KIAA1199 Silent p.V552V 0.32 TCGA-GF-A6C8-06 15 81201507 81201507 G A KIAA1199 Missense_Mutation p.G553S 0.32 tolerated(0.07) probably_damaging(1) TCGA-GF-A6C8-06 15 85433758 85433758 C T SLC28A1 Silent p.L90L 0.31 TCGA-GF-A6C8-06 15 86800142 86800142 G A AGBL1 Missense_Mutation p.R219K 0.31 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 15 89398124 89398124 G A ACAN Missense_Mutation p.E770K 0.27 deleterious(0.01) benign(0.001) TCGA-GF-A6C8-06 15 90020401 90020401 C T RHCG Silent p.G383G 0.30 TCGA-GF-A6C8-06 15 98984307 98984307 C T FAM169B Missense_Mutation p.G151D 0.39 tolerated(0.22) benign(0.003) TCGA-GF-A6C8-06 16 11990493 11990493 G A GSPT1 Missense_Mutation p.P196S 0.42 tolerated(0.07) benign(0.06) TCGA-GF-A6C8-06 16 11990494 11990494 G A GSPT1 Silent p.I195I 0.42 TCGA-GF-A6C8-06 16 1292091 1292091 G A TPSAB1 Silent p.G226G 0.43 TCGA-GF-A6C8-06 16 2096347 2096347 G A NTHL1 Missense_Mutation p.P54S 0.36 tolerated(0.14) benign(0.008) TCGA-GF-A6C8-06 16 2096348 2096348 G A NTHL1 Silent p.S53S 0.36 TCGA-GF-A6C8-06 16 23379252 23379252 T A SCNN1B Silent p.L284L 0.37 TCGA-GF-A6C8-06 16 23619306 23619306 G A PALB2 Missense_Mutation p.P1077S 0.33 deleterious(0.05) benign(0.106) TCGA-GF-A6C8-06 16 24192166 24192166 G A PRKCB Missense_Mutation p.D484N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C8-06 16 24958885 24958885 G A ARHGAP17 Nonsense_Mutation p.Q387* 0.36 TCGA-GF-A6C8-06 16 28167780 28167780 G A XPO6 Missense_Mutation p.L238F 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-GF-A6C8-06 16 30129374 30129374 G A MAPK3 Silent p.N218N 0.39 TCGA-GF-A6C8-06 16 30518079 30518079 G A ITGAL Missense_Mutation p.E804K 0.31 tolerated(0.76) benign(0.01) TCGA-GF-A6C8-06 16 31419231 31419231 G A ITGAD Missense_Mutation p.V335I 0.23 tolerated(1) benign(0.001) TCGA-GF-A6C8-06 16 31424257 31424257 C T ITGAD Silent p.A602A 0.30 TCGA-GF-A6C8-06 16 4774808 4774808 G C ANKS3 Silent p.P172P 0.21 TCGA-GF-A6C8-06 16 701848 701848 C T WDR90 Missense_Mutation p.P288S 0.36 tolerated(0.23) benign(0.005) TCGA-GF-A6C8-06 16 76556123 76556123 C T CNTNAP4 Silent p.V835V 0.34 TCGA-GF-A6C8-06 16 77465432 77465432 C T ADAMTS18 Silent p.R85R 0.41 TCGA-GF-A6C8-06 16 77775565 77775565 C T NUDT7 Silent p.F145F 0.11 TCGA-GF-A6C8-06 16 77775566 77775566 C T NUDT7 Silent p.L146L 0.13 TCGA-GF-A6C8-06 16 8729062 8729062 T G METTL22 Missense_Mutation p.L198R 0.48 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 16 89348012 89348012 G A ANKRD11 Silent p.D1646D 0.52 TCGA-GF-A6C8-06 16 89620245 89620245 C T SPG7 Silent p.S660S 0.43 TCGA-GF-A6C8-06 17 10397987 10397987 G A MYH1 Missense_Mutation p.R1824C 0.35 deleterious(0) probably_damaging(0.952) TCGA-GF-A6C8-06 17 11584153 11584153 C T DNAH9 Silent p.F1230F 0.35 TCGA-GF-A6C8-06 17 11687661 11687661 C T DNAH9 Silent p.A2622A 0.33 TCGA-GF-A6C8-06 17 1339973 1339973 C A CRK Missense_Mutation p.A240S 0.35 deleterious(0) probably_damaging(0.951) TCGA-GF-A6C8-06 17 15522784 15522784 G A CDRT1 Missense_Mutation p.R15C 0.21 deleterious(0.03) benign(0.017) TCGA-GF-A6C8-06 17 16724025 16724025 G A AC022596.6 RNA 0.22 TCGA-GF-A6C8-06 17 18082194 18082194 C T MYO15A 3'UTR 0.19 TCGA-GF-A6C8-06 17 18150990 18150990 A G FLII Missense_Mutation p.L823P 0.38 tolerated(0.09) probably_damaging(0.978) TCGA-GF-A6C8-06 17 2966102 2966102 G A OR1D5 Missense_Mutation p.S267F 0.12 deleterious(0) possibly_damaging(0.883) TCGA-GF-A6C8-06 17 30696710 30696710 C T ZNF207 Nonsense_Mutation p.Q473* 0.29 TCGA-GF-A6C8-06 17 3446837 3446837 C T TRPV3 Missense_Mutation p.E133K 0.38 tolerated(0.15) benign(0.061) TCGA-GF-A6C8-06 17 3999942 3999942 T C ZZEF1 Silent p.G575G 0.17 TCGA-GF-A6C8-06 17 3999943 3999943 C T ZZEF1 Missense_Mutation p.G575E 0.18 tolerated(1) benign(0.056) TCGA-GF-A6C8-06 17 3999944 3999944 C T ZZEF1 Missense_Mutation p.G575R 0.18 tolerated(0.12) possibly_damaging(0.83) TCGA-GF-A6C8-06 17 40858189 40858189 G A EZH1 Missense_Mutation p.P559S 0.24 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 17 40990965 40990965 G A PSME3 Missense_Mutation p.E173K 0.31 deleterious(0.01) benign(0.295) TCGA-GF-A6C8-06 17 4579795 4579795 C A PELP1 Missense_Mutation p.C237F 0.18 probably_damaging(0.949) TCGA-GF-A6C8-06 17 47243507 47243507 C T B4GALNT2 Missense_Mutation p.S389F 0.32 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 17 4805142 4805142 C T C17orf107 3'UTR 0.45 TCGA-GF-A6C8-06 17 48247642 48247642 G A SGCA Missense_Mutation p.V296M 0.36 deleterious(0) probably_damaging(0.926) TCGA-GF-A6C8-06 17 48632595 48632595 C T SPATA20 Silent p.I720I 0.24 TCGA-GF-A6C8-06 17 59944992 59944992 G A INTS2 Missense_Mutation p.P1181S 0.37 tolerated_low_confidence(0.11) possibly_damaging(0.6) TCGA-GF-A6C8-06 17 73492378 73492378 C T KIAA0195 Silent p.P1023P 0.37 TCGA-GF-A6C8-06 17 73751164 73751164 G A ITGB4 Intron 0.46 TCGA-GF-A6C8-06 17 73887210 73887210 G A TRIM65 Missense_Mutation p.P402S 0.25 tolerated(0.19) benign(0.21) TCGA-GF-A6C8-06 17 74008111 74008111 G A EVPL Silent p.S811S 0.22 TCGA-GF-A6C8-06 17 74011013 74011013 C T EVPL Missense_Mutation p.D736N 0.36 tolerated(0.65) probably_damaging(0.931) TCGA-GF-A6C8-06 17 74383656 74383656 G A SPHK1 Missense_Mutation p.E468K 0.13 tolerated_low_confidence(0.33) benign(0.019) TCGA-GF-A6C8-06 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.43 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C8-06 17 7643208 7643208 G A DNAH2 Missense_Mutation p.G443E 0.27 benign(0.05) TCGA-GF-A6C8-06 17 78326855 78326855 T C RNF213 Silent p.P3473P 0.32 TCGA-GF-A6C8-06 17 8396274 8396274 C T MYH10 Silent p.K1426K 0.26 TCGA-GF-A6C8-06 17 8396297 8396297 C T MYH10 Missense_Mutation p.E1419K 0.28 benign(0.423) TCGA-GF-A6C8-06 18 21199591 21199591 G T ANKRD29 Missense_Mutation p.D177E 0.24 deleterious(0.02) benign(0.426) TCGA-GF-A6C8-06 18 28993279 28993279 G A DSG4 Silent p.G967G 0.29 TCGA-GF-A6C8-06 18 2937962 2937962 C T LPIN2 Missense_Mutation p.R299Q 0.25 tolerated(0.23) probably_damaging(0.938) TCGA-GF-A6C8-06 18 43204652 43204652 C T SLC14A2 Missense_Mutation p.P8L 0.32 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-GF-A6C8-06 18 44030268 44030268 G A RNF165 Missense_Mutation p.E209K 0.41 tolerated(0.2) probably_damaging(0.993) TCGA-GF-A6C8-06 18 47908564 47908564 C T SKA1 Silent p.S93S 0.21 TCGA-GF-A6C8-06 18 48256147 48256147 G A MAPK4 Missense_Mutation p.D563N 0.22 tolerated_low_confidence(0.08) benign(0.34) TCGA-GF-A6C8-06 18 49867124 49867124 C T DCC 5'UTR 0.25 TCGA-GF-A6C8-06 18 50705414 50705414 C T DCC Nonsense_Mutation p.R501* 0.39 TCGA-GF-A6C8-06 18 52585208 52585208 T A CCDC68 Missense_Mutation p.N270I 0.21 tolerated(0.07) benign(0.22) TCGA-GF-A6C8-06 18 59170276 59170276 T C CDH20 Missense_Mutation p.L251P 0.32 tolerated(0.15) probably_damaging(0.983) TCGA-GF-A6C8-06 18 59221584 59221584 G A CDH20 Missense_Mutation p.E688K 0.30 tolerated(0.82) probably_damaging(0.996) TCGA-GF-A6C8-06 18 5956254 5956254 C T L3MBTL4 Missense_Mutation p.E613K 0.40 tolerated_low_confidence(0.09) benign(0.214) TCGA-GF-A6C8-06 18 6890516 6890516 C T ARHGAP28 Missense_Mutation p.L449F 0.42 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 18 77221367 77221367 G A NFATC1 Splice_Site p.X640_splice 0.22 TCGA-GF-A6C8-06 19 11537503 11537503 C T CCDC151 Missense_Mutation p.M238I 0.21 deleterious(0.03) benign(0.012) TCGA-GF-A6C8-06 19 1486953 1486953 C T PCSK4 Missense_Mutation p.G323S 0.20 tolerated(1) probably_damaging(0.999) TCGA-GF-A6C8-06 19 15166308 15166308 G A CASP14 Silent p.T196T 0.42 TCGA-GF-A6C8-06 19 15839189 15839189 C T OR10H2 Silent p.S112S 0.23 TCGA-GF-A6C8-06 19 16977203 16977203 G A SIN3B Missense_Mutation p.E580K 0.30 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C8-06 19 17056388 17056388 C T CPAMD8 Missense_Mutation p.D969N 0.25 deleterious(0.04) benign(0.386) TCGA-GF-A6C8-06 19 17370503 17370503 G A USHBP1 Silent p.L269L 0.29 TCGA-GF-A6C8-06 19 18375751 18375751 G A KIAA1683 Missense_Mutation p.P867S 0.49 tolerated(0.24) benign(0.085) TCGA-GF-A6C8-06 19 19338911 19338911 C T NCAN Missense_Mutation p.P828S 0.36 tolerated(0.14) benign(0.07) TCGA-GF-A6C8-06 19 2226995 2226995 C T DOT1L Missense_Mutation p.S1492F 0.31 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-GF-A6C8-06 19 22364054 22364054 G A ZNF676 Silent p.H155H 0.31 TCGA-GF-A6C8-06 19 33487076 33487076 C T RHPN2 Missense_Mutation p.E426K 0.31 tolerated(0.08) benign(0.155) TCGA-GF-A6C8-06 19 37368064 37368064 T A ZNF345 Missense_Mutation p.I111N 0.44 deleterious(0) possibly_damaging(0.895) TCGA-GF-A6C8-06 19 37368890 37368890 C T ZNF345 Silent p.I386I 0.28 TCGA-GF-A6C8-06 19 3759741 3759741 G A APBA3 Silent p.P174P 0.43 TCGA-GF-A6C8-06 19 37879399 37879399 G A ZNF527 Missense_Mutation p.V150M 0.25 tolerated(0.15) benign(0.005) TCGA-GF-A6C8-06 19 38850120 38850120 G A CATSPERG Missense_Mutation p.E503K 0.27 tolerated(0.51) possibly_damaging(0.486) TCGA-GF-A6C8-06 19 40887003 40887003 C A HIPK4 Missense_Mutation p.V299L 0.29 tolerated(0.54) benign(0.035) TCGA-GF-A6C8-06 19 40900776 40900776 C T PRX Silent p.G1161G 0.33 TCGA-GF-A6C8-06 19 40900777 40900777 C T PRX Missense_Mutation p.G1161E 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-GF-A6C8-06 19 4318903 4318903 C T FSD1 Missense_Mutation p.R332C 0.36 deleterious(0) probably_damaging(0.965) TCGA-GF-A6C8-06 19 43519293 43519293 G T PSG11 Silent p.S313S 0.41 TCGA-GF-A6C8-06 19 43689253 43689253 C T PSG5 Silent p.T37T 0.29 TCGA-GF-A6C8-06 19 4512739 4512739 C T PLIN4 Silent p.A397A 0.60 TCGA-GF-A6C8-06 19 46195221 46195221 C T SNRPD2 5'UTR 0.32 TCGA-GF-A6C8-06 19 46498700 46498700 C T CCDC61 5'Flank 0.29 TCGA-GF-A6C8-06 19 49671516 49671516 G A TRPM4 Splice_Site p.X150_splice 0.35 TCGA-GF-A6C8-06 19 50969529 50969529 A G MYBPC2 3'UTR 0.27 TCGA-GF-A6C8-06 19 52550248 52550248 G A ZNF432 5'UTR 0.23 TCGA-GF-A6C8-06 19 53793632 53793632 G A BIRC8 5'UTR 0.28 TCGA-GF-A6C8-06 19 54617859 54617859 T G TFPT Missense_Mutation p.Y82S 0.24 deleterious(0.04) benign(0.268) TCGA-GF-A6C8-06 19 55020268 55020268 C T LAIR2 Missense_Mutation p.P130S 0.23 tolerated(0.16) benign(0.021) TCGA-GF-A6C8-06 19 55106348 55106348 C T LILRA1 Missense_Mutation p.R97C 0.39 tolerated(0.05) possibly_damaging(0.557) TCGA-GF-A6C8-06 19 56459497 56459497 G A NLRP8 Missense_Mutation p.E77K 0.30 tolerated(1) benign(0) TCGA-GF-A6C8-06 19 57641114 57641114 C T USP29 Silent p.V357V 0.31 TCGA-GF-A6C8-06 19 58868414 58868414 G A ZNF497 Silent p.G196G 0.44 TCGA-GF-A6C8-06 19 58928729 58928729 C T ZNF584 Silent p.L282L 0.32 TCGA-GF-A6C8-06 19 8530352 8530352 C T HNRNPM Missense_Mutation p.H195Y 0.24 deleterious(0.02) benign(0.193) TCGA-GF-A6C8-06 19 9056850 9056850 G A MUC16 Missense_Mutation p.S10199F 0.25 benign(0.293) TCGA-GF-A6C8-06 19 9076539 9076539 G A MUC16 Missense_Mutation p.T3636I 0.31 unknown(0) TCGA-GF-A6C8-06 19 9089680 9089680 G A MUC16 Missense_Mutation p.P712L 0.35 unknown(0) TCGA-GF-A6C8-06 1 100382224 100382224 C T AGL Missense_Mutation p.T1473I 0.21 tolerated(0.21) benign(0.002) TCGA-GF-A6C8-06 1 103470011 103470011 G A COL11A1 Missense_Mutation p.P645S 0.30 unknown(0) TCGA-GF-A6C8-06 1 110734654 110734654 T C SLC6A17 Silent p.L309L 0.34 TCGA-GF-A6C8-06 1 117529513 117529513 C T PTGFRN Missense_Mutation p.S855F 0.28 deleterious(0) possibly_damaging(0.83) TCGA-GF-A6C8-06 1 119927555 119927555 C T HAO2 Missense_Mutation p.S147F 0.27 deleterious(0.01) possibly_damaging(0.811) TCGA-GF-A6C8-06 1 12144603 12144603 C T TNFRSF8 Missense_Mutation p.P49L 0.41 deleterious(0) benign(0.442) TCGA-GF-A6C8-06 1 12921664 12921664 C T PRAMEF2 3'UTR 0.15 TCGA-GF-A6C8-06 1 13036630 13036630 G A PRAMEF22 Silent p.R234R 0.14 TCGA-GF-A6C8-06 1 1309657 1309658 - G AURKAIP1 Frame_Shift_Ins p.L74Pfs*44 0.24 TCGA-GF-A6C8-06 1 1417956 1417956 C T ATAD3B Missense_Mutation p.R238C 0.27 tolerated(0.07) benign(0.035) TCGA-GF-A6C8-06 1 149898276 149898276 G A SF3B4 Missense_Mutation p.P233L 0.36 tolerated(0.08) unknown(0) TCGA-GF-A6C8-06 1 149898277 149898277 G A SF3B4 Missense_Mutation p.P233S 0.35 tolerated(0.08) unknown(0) TCGA-GF-A6C8-06 1 152286406 152286406 C T FLG Missense_Mutation p.R319K 0.32 probably_damaging(0.968) TCGA-GF-A6C8-06 1 152785139 152785139 G A LCE1B Missense_Mutation p.G73S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-GF-A6C8-06 1 152975799 152975799 C T SPRR3 Silent p.V101V 0.45 TCGA-GF-A6C8-06 1 153391775 153391775 G A S100A7A Missense_Mutation p.G99E 0.50 tolerated(0.1) benign(0.05) TCGA-GF-A6C8-06 1 154033515 154033515 G A NUP210L Missense_Mutation p.S884F 0.43 deleterious(0.03) benign(0.019) TCGA-GF-A6C8-06 1 156438708 156438708 G A MEF2D Nonsense_Mutation p.Q371* 0.30 TCGA-GF-A6C8-06 1 158576655 158576655 C T OR10Z1 Nonsense_Mutation p.Q143* 0.61 TCGA-GF-A6C8-06 1 16558518 16558518 G A RSG1 3'UTR 0.38 TCGA-GF-A6C8-06 1 168215849 168215849 C T SFT2D2 3'UTR 0.54 TCGA-GF-A6C8-06 1 169391029 169391029 C T CCDC181 Missense_Mutation p.D214N 0.60 tolerated(0.12) benign(0.251) TCGA-GF-A6C8-06 1 169528523 169528523 C T F5 Missense_Mutation p.E200K 0.57 tolerated(0.12) benign(0.221) TCGA-GF-A6C8-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.39 deleterious(0) possibly_damaging(0.871) TCGA-GF-A6C8-06 1 197614869 197614869 G A DENND1B Missense_Mutation p.S171F 0.67 deleterious(0.04) possibly_damaging(0.905) TCGA-GF-A6C8-06 1 201060863 201060863 G A CACNA1S Missense_Mutation p.A200V 0.58 tolerated(0.06) possibly_damaging(0.85) TCGA-GF-A6C8-06 1 210415509 210415509 G A SERTAD4 Missense_Mutation p.E300K 0.60 deleterious(0.03) benign(0.067) TCGA-GF-A6C8-06 1 226019639 226019639 C T EPHX1 Missense_Mutation p.H115Y 0.66 deleterious(0) probably_damaging(0.982) TCGA-GF-A6C8-06 1 23236903 23236903 G A EPHB2 Missense_Mutation p.R845Q 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 1 235590494 235590494 C T TBCE Missense_Mutation p.S167L 0.63 deleterious(0.02) benign(0.078) TCGA-GF-A6C8-06 1 236306026 236306026 C G GPR137B Missense_Mutation p.P35R 0.74 deleterious(0.03) probably_damaging(0.999) TCGA-GF-A6C8-06 1 237791283 237791283 G A RYR2 Missense_Mutation p.D2115N 0.60 probably_damaging(1) TCGA-GF-A6C8-06 1 248344289 248344289 C T OR2M2 Silent p.F334F 0.55 TCGA-GF-A6C8-06 1 248790286 248790286 C T OR2T11 Silent p.V48V 0.65 TCGA-GF-A6C8-06 1 249208053 249208053 C T PGBD2 5'UTR 0.60 TCGA-GF-A6C8-06 1 26317344 26317344 G A PAFAH2 5'UTR 0.25 TCGA-GF-A6C8-06 1 28477476 28477476 C T PTAFR Silent p.P19P 0.36 TCGA-GF-A6C8-06 1 29609361 29609361 C T PTPRU Missense_Mutation p.T681I 0.33 deleterious(0.03) benign(0.021) TCGA-GF-A6C8-06 1 32628039 32628039 C T KPNA6 Silent p.A275A 0.31 TCGA-GF-A6C8-06 1 34182069 34182069 C T CSMD2 Missense_Mutation p.E972K 0.50 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 1 35321030 35321030 A G SMIM12 3'UTR 0.24 TCGA-GF-A6C8-06 1 36219442 36219453 CTTTCACTATGA - CLSPN In_Frame_Del p.V555_K558del 0.33 TCGA-GF-A6C8-06 1 40236170 40236170 G A OXCT2 Missense_Mutation p.A253V 0.27 tolerated(0.08) benign(0.002) TCGA-GF-A6C8-06 1 40431539 40431539 G A MFSD2A Silent p.V202V 0.36 TCGA-GF-A6C8-06 1 46977889 46977889 C T DMBX1 Missense_Mutation p.P286L 0.31 deleterious_low_confidence(0) benign(0.328) TCGA-GF-A6C8-06 1 55070058 55070058 C T ACOT11 Missense_Mutation p.L398F 0.18 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C8-06 1 55521827 55521827 G A PCSK9 Missense_Mutation p.D321N 0.45 deleterious(0.01) probably_damaging(0.979) TCGA-GF-A6C8-06 1 57480834 57480834 G A DAB1 Missense_Mutation p.T389I 0.27 deleterious(0.02) benign(0.054) TCGA-GF-A6C8-06 1 75038023 75038023 G A C1orf173 Missense_Mutation p.S1124F 0.33 tolerated(0.37) benign(0.346) TCGA-GF-A6C8-06 1 906358 906358 C T PLEKHN1 Missense_Mutation p.P195L 0.19 tolerated(0.17) benign(0) TCGA-GF-A6C8-06 20 11903895 11903895 C G BTBD3 Missense_Mutation p.R384G 0.36 tolerated(0.07) benign(0.015) TCGA-GF-A6C8-06 20 14306935 14306935 G A FLRT3 Silent p.P406P 0.26 TCGA-GF-A6C8-06 20 14306936 14306936 G A FLRT3 Missense_Mutation p.P406L 0.26 tolerated(0.37) benign(0.041) TCGA-GF-A6C8-06 20 20123506 20123506 G A C20orf26 Missense_Mutation p.E289K 0.25 tolerated(0.54) benign(0.004) TCGA-GF-A6C8-06 20 22562688 22562688 G A FOXA2 Missense_Mutation p.H398Y 0.33 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-GF-A6C8-06 20 2384292 2384292 G A TGM6 Missense_Mutation p.D387N 0.44 deleterious(0) possibly_damaging(0.521) TCGA-GF-A6C8-06 20 2464712 2464712 A C ZNF343 Missense_Mutation p.C299G 0.29 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 20 35696432 35696432 G A RBL1 Missense_Mutation p.P150S 0.24 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C8-06 20 40944419 40944419 G A PTPRT Missense_Mutation p.L695F 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-GF-A6C8-06 20 42965792 42965792 C T R3HDML 5'UTR 0.35 TCGA-GF-A6C8-06 20 45130698 45130698 T A ZNF334 Missense_Mutation p.H427L 0.31 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 20 55026876 55026876 G A CASS4 Missense_Mutation p.G215E 0.41 tolerated(0.28) benign(0.008) TCGA-GF-A6C8-06 20 5974946 5974946 T C MCM8 Missense_Mutation p.V811A 0.36 tolerated(0.08) benign(0.297) TCGA-GF-A6C8-06 21 10920136 10920136 C T TPTE Missense_Mutation p.R373Q 0.13 deleterious(0) probably_damaging(0.958) TCGA-GF-A6C8-06 21 15599243 15599243 G A RBM11 Missense_Mutation p.E159K 0.36 deleterious(0.02) possibly_damaging(0.611) TCGA-GF-A6C8-06 21 37785495 37785495 C T CHAF1B Missense_Mutation p.P459S 0.41 tolerated(0.63) benign(0) TCGA-GF-A6C8-06 21 42064803 42064803 G A DSCAM Silent p.I147I 0.38 TCGA-GF-A6C8-06 21 43796783 43796783 G A TMPRSS3 Missense_Mutation p.S354F 0.28 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.04 TCGA-GF-A6C8-06 22 16287391 16287391 G A POTEH Silent p.F165F 0.11 TCGA-GF-A6C8-06 22 17488934 17488934 G A GAB4 Missense_Mutation p.S24L 0.35 deleterious_low_confidence(0) benign(0.32) TCGA-GF-A6C8-06 22 20718514 20718514 C T USP41 Missense_Mutation p.G329R 0.29 tolerated(0.44) benign(0.162) TCGA-GF-A6C8-06 22 25601247 25601247 G A CRYBB3 Missense_Mutation p.E130K 0.17 deleterious(0) possibly_damaging(0.895) TCGA-GF-A6C8-06 22 26829806 26829806 T C ASPHD2 Silent p.C75C 0.26 TCGA-GF-A6C8-06 22 31487242 31487242 C T SMTN Silent p.P411P 0.50 TCGA-GF-A6C8-06 22 36892022 36892022 A G FOXRED2 Missense_Mutation p.L539P 0.32 deleterious(0.03) benign(0.214) TCGA-GF-A6C8-06 22 37211270 37211270 G A PVALB Missense_Mutation p.S24F 0.35 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C8-06 22 37769190 37769190 C T ELFN2 Silent p.K795K 0.28 TCGA-GF-A6C8-06 22 40662777 40662777 C T TNRC6B Missense_Mutation p.P848L 0.23 deleterious(0) benign(0.14) TCGA-GF-A6C8-06 2 102490663 102490663 C T MAP4K4 Missense_Mutation p.R919C 0.48 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GF-A6C8-06 2 107460390 107460390 C T ST6GAL2 Missense_Mutation p.G15E 0.38 probably_damaging(0.985) TCGA-GF-A6C8-06 2 109365414 109365414 T C RANBP2 Missense_Mutation p.F368L 0.39 tolerated(0.13) benign(0.018) TCGA-GF-A6C8-06 2 109384791 109384791 C T RANBP2 Missense_Mutation p.S2599F 0.24 deleterious(0.01) benign(0.012) TCGA-GF-A6C8-06 2 110015347 110015347 C T SH3RF3 Missense_Mutation p.A416V 0.28 deleterious(0.03) possibly_damaging(0.766) TCGA-GF-A6C8-06 2 130792756 130792756 G A FAR2P1 5'Flank 0.22 TCGA-GF-A6C8-06 2 133547732 133547732 C T NCKAP5 Missense_Mutation p.G319E 0.17 deleterious(0.04) probably_damaging(0.934) TCGA-GF-A6C8-06 2 143713800 143713800 G A KYNU Missense_Mutation p.R155Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C8-06 2 160033010 160033010 C T TANC1 Missense_Mutation p.T628I 0.24 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 2 166245220 166245220 G A SCN2A Missense_Mutation p.R1635Q 0.26 deleterious(0.01) benign(0.103) TCGA-GF-A6C8-06 2 177036268 177036268 C T HOXD3 Missense_Mutation p.P189S 0.30 deleterious(0.05) possibly_damaging(0.857) TCGA-GF-A6C8-06 2 179401241 179401241 C T TTN Silent p.V33411V 0.40 TCGA-GF-A6C8-06 2 179452434 179452434 C T TTN Missense_Mutation p.R21201Q 0.38 TCGA-GF-A6C8-06 2 179622644 179622644 C T TTN Splice_Site p.X3435_splice 0.27 TCGA-GF-A6C8-06 2 196774764 196774764 C T DNAH7 Missense_Mutation p.G1364E 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 2 207527784 207527784 G A DYTN Silent p.P492P 0.35 TCGA-GF-A6C8-06 2 207621695 207621695 C T MDH1B Missense_Mutation p.A114T 0.26 tolerated(1) benign(0.001) TCGA-GF-A6C8-06 2 207621696 207621696 C T MDH1B Silent p.G113G 0.26 TCGA-GF-A6C8-06 2 209200545 209200545 G T PIKFYVE Nonsense_Mutation p.E1429* 0.26 TCGA-GF-A6C8-06 2 212295742 212295742 C T ERBB4 Silent p.V857V 0.30 TCGA-GF-A6C8-06 2 21229679 21229679 G A APOB Missense_Mutation p.A3354V 0.24 benign(0.007) TCGA-GF-A6C8-06 2 21231816 21231816 G A APOB Missense_Mutation p.P2642S 0.25 probably_damaging(0.996) TCGA-GF-A6C8-06 2 219507638 219507638 G A ZNF142 Nonsense_Mutation p.Q1201* 0.26 TCGA-GF-A6C8-06 2 219875372 219875372 C T CCDC108 Missense_Mutation p.G1402R 0.22 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 2 225266236 225266236 G A FAM124B Missense_Mutation p.R84C 0.35 deleterious(0) probably_damaging(0.911) TCGA-GF-A6C8-06 2 231177471 231177471 C T SP140 3'UTR 0.32 TCGA-GF-A6C8-06 2 233246248 233246248 G A ALPP Missense_Mutation p.E451K 0.21 deleterious(0.04) benign(0.028) TCGA-GF-A6C8-06 2 234581341 234581341 G A UGT1A9 Missense_Mutation p.R254Q 0.30 deleterious(0.01) possibly_damaging(0.903) TCGA-GF-A6C8-06 2 242151534 242151534 C T ANO7 Silent p.F583F 0.37 TCGA-GF-A6C8-06 2 242689687 242689687 C T D2HGDH Silent p.L325L 0.35 TCGA-GF-A6C8-06 2 26802210 26802210 C T C2orf70 Silent p.P170P 0.36 TCGA-GF-A6C8-06 2 54891739 54891739 C T SPTBN1 Silent p.A2190A 0.40 TCGA-GF-A6C8-06 2 71060880 71060880 G A CD207 Silent p.I154I 0.37 TCGA-GF-A6C8-06 2 85570396 85570396 G A RETSAT Missense_Mutation p.S601F 0.43 deleterious(0.01) benign(0.142) TCGA-GF-A6C8-06 3 10140429 10140429 C T FANCD2 Missense_Mutation p.S1404F 0.45 deleterious(0) probably_damaging(0.947) TCGA-GF-A6C8-06 3 108112902 108112902 C T MYH15 Silent p.E1765E 0.20 TCGA-GF-A6C8-06 3 119328329 119328329 G A PLA1A Silent p.S156S 0.25 TCGA-GF-A6C8-06 3 120360533 120360533 G A HGD Missense_Mutation p.S261F 0.31 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 3 137729136 137729136 G A CLDN18 Silent p.A23A 0.23 TCGA-GF-A6C8-06 3 137729137 137729137 G A CLDN18 Missense_Mutation p.A24T 0.23 deleterious(0) probably_damaging(0.911) TCGA-GF-A6C8-06 3 137729148 137729148 G A CLDN18 Missense_Mutation p.M27I 0.30 tolerated(0.13) benign(0.05) TCGA-GF-A6C8-06 3 142184064 142184064 G A ATR Missense_Mutation p.L2306F 0.24 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 3 150421557 150421557 C T FAM194A Silent p.E43E 0.29 TCGA-GF-A6C8-06 3 164783091 164783091 C T SI Nonsense_Mutation p.W255* 0.16 TCGA-GF-A6C8-06 3 178941917 178941917 G T PIK3CA Missense_Mutation p.D746Y 0.30 deleterious(0) benign(0.445) TCGA-GF-A6C8-06 3 184297663 184297663 C T EPHB3 Missense_Mutation p.R705W 0.23 deleterious(0) probably_damaging(0.953) TCGA-GF-A6C8-06 3 189584510 189584510 G A TP63 Missense_Mutation p.G269E 0.34 deleterious(0.01) probably_damaging(0.93) TCGA-GF-A6C8-06 3 195538626 195538626 G A MUC4 Silent p.L21L 0.22 TCGA-GF-A6C8-06 3 195605959 195605959 G A TNK2 Silent p.T388T 0.28 TCGA-GF-A6C8-06 3 196388349 196388349 C G NRROS Missense_Mutation p.T612R 0.31 tolerated(0.47) benign(0.05) TCGA-GF-A6C8-06 3 42304946 42304946 G A CCK Silent p.G59G 0.41 TCGA-GF-A6C8-06 3 46414676 46414676 G A CCR5 Missense_Mutation p.D95N 0.39 deleterious(0.02) benign(0.009) TCGA-GF-A6C8-06 3 49166461 49166461 G A LAMB2 Nonsense_Mutation p.R575* 0.49 TCGA-GF-A6C8-06 3 49936668 49936668 G A MST1R Missense_Mutation p.T420I 0.54 tolerated(0.49) benign(0.013) TCGA-GF-A6C8-06 3 50114462 50114462 C T RBM6 Missense_Mutation p.P1090S 0.60 tolerated(0.08) benign(0.019) TCGA-GF-A6C8-06 3 51664814 51664814 G T RAD54L2 Missense_Mutation p.G231V 0.33 tolerated(0.06) benign(0.199) TCGA-GF-A6C8-06 3 52416420 52416420 C T DNAH1 Silent p.L2630L 0.47 TCGA-GF-A6C8-06 3 71591229 71591229 A T MIR1284 RNA 0.67 TCGA-GF-A6C8-06 3 88104856 88104856 G A CGGBP1 Nonsense_Mutation p.Q91* 0.36 TCGA-GF-A6C8-06 3 88104979 88104979 G A CGGBP1 Silent p.L50L 0.35 TCGA-GF-A6C8-06 4 146560479 146560479 G A MMAA Missense_Mutation p.R63K 0.51 tolerated(0.18) benign(0.064) TCGA-GF-A6C8-06 4 156651326 156651326 G A GUCY1A3 Silent p.K672K 0.39 TCGA-GF-A6C8-06 4 166960505 166960505 T A TLL1 Missense_Mutation p.F391L 0.44 tolerated(0.3) possibly_damaging(0.563) TCGA-GF-A6C8-06 4 20852291 20852291 C T KCNIP4 Splice_Site p.X55_splice 0.57 TCGA-GF-A6C8-06 4 69683885 69683885 C T UGT2B10 Missense_Mutation p.P286L 0.42 deleterious(0) possibly_damaging(0.516) TCGA-GF-A6C8-06 4 96166262 96166262 G A UNC5C Missense_Mutation p.S270F 0.44 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C8-06 5 106717021 106717021 G A EFNA5 Missense_Mutation p.P208S 0.27 tolerated(0.21) benign(0.107) TCGA-GF-A6C8-06 5 140181517 140181517 G A PCDHA3 Silent p.T245T 0.59 TCGA-GF-A6C8-06 5 140480201 140480201 G A PCDHB3 5'Flank 0.50 TCGA-GF-A6C8-06 5 140594596 140594596 G A PCDHB13 Missense_Mutation p.E301K 0.45 deleterious_low_confidence(0.01) benign(0.078) TCGA-GF-A6C8-06 5 149497317 149497317 G A PDGFRB Missense_Mutation p.P1001S 0.35 tolerated(0.21) benign(0.019) TCGA-GF-A6C8-06 5 156982 156982 G A PLEKHG4B Missense_Mutation p.E459K 0.80 deleterious(0.03) benign(0.424) TCGA-GF-A6C8-06 5 157078819 157078819 C T SOX30 Missense_Mutation p.E90K 0.54 tolerated_low_confidence(0.27) benign(0.001) TCGA-GF-A6C8-06 5 169675650 169675650 C T LCP2 3'UTR 0.44 TCGA-GF-A6C8-06 5 176308503 176308503 G A HK3 Silent p.I809I 0.19 TCGA-GF-A6C8-06 5 176719072 176719072 G C NSD1 Missense_Mutation p.D2126H 0.50 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 5 179956363 179956363 C T CNOT6 Silent p.S29S 0.36 TCGA-GF-A6C8-06 5 180419893 180419893 C T BTNL3 Missense_Mutation p.P44S 0.75 tolerated(0.11) probably_damaging(1) TCGA-GF-A6C8-06 5 21760698 21760698 G A CDH12 Silent p.I534I 0.47 TCGA-GF-A6C8-06 5 40958353 40958353 G A C7 Silent p.G493G 0.47 TCGA-GF-A6C8-06 5 64484036 64484036 C T ADAMTS6 Missense_Mutation p.G906E 0.57 deleterious(0) possibly_damaging(0.822) TCGA-GF-A6C8-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.45 TCGA-GF-A6C8-06 5 70806888 70806888 A G BDP1 Silent p.L1323L 0.42 TCGA-GF-A6C8-06 5 79378234 79378234 G A THBS4 Missense_Mutation p.R897Q 0.26 tolerated(0.06) benign(0.009) TCGA-GF-A6C8-06 5 85592151 85592151 T A NBPF22P RNA 0.73 TCGA-GF-A6C8-06 5 90050985 90050985 G A GPR98 Missense_Mutation p.E3855K 0.28 benign(0) TCGA-GF-A6C8-06 6 109190187 109190187 C T ARMC2 Missense_Mutation p.P151L 0.27 tolerated(0.19) benign(0.002) TCGA-GF-A6C8-06 6 116600049 116600049 A T TSPYL1 Silent p.P315P 0.28 TCGA-GF-A6C8-06 6 116833183 116833183 G A FAM26E Silent p.L108L 0.30 TCGA-GF-A6C8-06 6 129950641 129950641 C T ARHGAP18 Missense_Mutation p.E215K 0.33 tolerated(0.86) benign(0) TCGA-GF-A6C8-06 6 130378612 130378612 G A L3MBTL3 Silent p.A243A 0.26 TCGA-GF-A6C8-06 6 130378613 130378613 G A L3MBTL3 Missense_Mutation p.V244M 0.24 deleterious(0.01) benign(0.074) TCGA-GF-A6C8-06 6 130763074 130763074 A C TMEM200A 3'UTR 0.24 TCGA-GF-A6C8-06 6 151130834 151130834 G A PLEKHG1 Silent p.L414L 0.36 TCGA-GF-A6C8-06 6 155450984 155450984 C T TIAM2 Silent p.S209S 0.24 TCGA-GF-A6C8-06 6 157528231 157528231 C T ARID1B Missense_Mutation p.P1986S 0.26 probably_damaging(0.997) TCGA-GF-A6C8-06 6 159262828 159262828 G A OSTCP1 RNA 0.22 TCGA-GF-A6C8-06 6 160210513 160210513 G A TCP1 5'UTR 0.13 TCGA-GF-A6C8-06 6 160829804 160829804 G A SLC22A3 Silent p.S236S 0.42 TCGA-GF-A6C8-06 6 161006212 161006212 G A LPA Silent p.V1385V 0.36 TCGA-GF-A6C8-06 6 161132162 161132162 T C PLG Missense_Mutation p.S116P 0.34 deleterious(0.01) possibly_damaging(0.907) TCGA-GF-A6C8-06 6 161155081 161155081 C T PLG Missense_Mutation p.P548S 0.24 deleterious(0.05) possibly_damaging(0.741) TCGA-GF-A6C8-06 6 167754067 167754067 G A TTLL2 Missense_Mutation p.D227N 0.20 deleterious(0.02) possibly_damaging(0.873) TCGA-GF-A6C8-06 6 169637826 169637826 G A THBS2 Silent p.G398G 0.17 TCGA-GF-A6C8-06 6 20124682 20124682 G T MBOAT1 Silent p.V288V 0.38 TCGA-GF-A6C8-06 6 27835011 27835011 G A HIST1H1B Silent p.T99T 0.28 TCGA-GF-A6C8-06 6 28501815 28501815 C T GPX5 Silent p.I179I 0.28 TCGA-GF-A6C8-06 6 31603361 31603361 C T PRRC2A Silent p.A1792A 0.29 TCGA-GF-A6C8-06 6 33174463 33174463 C T HSD17B8 3'UTR 0.27 TCGA-GF-A6C8-06 6 41126485 41126485 C T TREM2 3'UTR 0.30 TCGA-GF-A6C8-06 6 49753849 49753849 C T PGK2 Missense_Mutation p.G351E 0.31 deleterious(0.03) probably_damaging(0.989) TCGA-GF-A6C8-06 6 49989655 49989655 G A DEFB110 5'UTR 0.29 TCGA-GF-A6C8-06 6 56474095 56474095 G A DST Intron 0.34 TCGA-GF-A6C8-06 6 656586 656586 G A HUS1B Missense_Mutation p.S120L 0.45 tolerated(0.14) benign(0.004) TCGA-GF-A6C8-06 6 82950222 82950222 A G IBTK 5'UTR 0.40 TCGA-GF-A6C8-06 6 88854655 88854655 G A CNR1 Silent p.P113P 0.40 TCGA-GF-A6C8-06 6 93965618 93965618 G A EPHA7 Silent p.L770L 0.27 TCGA-GF-A6C8-06 7 100086055 100086055 C T NYAP1 Silent p.P237P 0.43 TCGA-GF-A6C8-06 7 100184241 100184241 C T FBXO24 5'Flank 0.18 TCGA-GF-A6C8-06 7 100607906 100607906 C T MUC3A Intron 0.19 TCGA-GF-A6C8-06 7 100685780 100685780 C T MUC17 Missense_Mutation p.P3695S 0.28 benign(0) TCGA-GF-A6C8-06 7 100867053 100867053 C T ZNHIT1 Missense_Mutation p.P125S 0.20 tolerated(0.61) benign(0.003) TCGA-GF-A6C8-06 7 100867054 100867054 C T ZNHIT1 Missense_Mutation p.P125L 0.23 tolerated(0.27) benign(0.059) TCGA-GF-A6C8-06 7 107708574 107708574 C T LAMB4 Missense_Mutation p.G778E 0.33 tolerated(0.05) possibly_damaging(0.876) TCGA-GF-A6C8-06 7 112462247 112462247 C T C7orf60 Nonsense_Mutation p.W257* 0.38 TCGA-GF-A6C8-06 7 122774538 122774538 C T SLC13A1 Silent p.T286T 0.18 TCGA-GF-A6C8-06 7 123105037 123105037 T G IQUB Missense_Mutation p.E536D 0.34 tolerated(0.24) benign(0.386) TCGA-GF-A6C8-06 7 124532329 124532329 T C POT1 Missense_Mutation p.K39E 0.32 deleterious(0) benign(0.064) TCGA-GF-A6C8-06 7 128371252 128371252 G A FAM71F1 3'UTR 0.36 TCGA-GF-A6C8-06 7 128484784 128484784 G A FLNC Missense_Mutation p.G1089R 0.27 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 7 129098233 129098233 C T STRIP2 Missense_Mutation p.P406S 0.28 tolerated(0.09) benign(0.081) TCGA-GF-A6C8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-GF-A6C8-06 7 143080289 143080289 C T ZYX Silent p.P299P 0.44 TCGA-GF-A6C8-06 7 20199461 20199461 G A MACC1 Missense_Mutation p.R175W 0.33 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C8-06 7 2582947 2582947 A T BRAT1 Missense_Mutation p.F272I 0.22 tolerated(0.07) benign(0.071) TCGA-GF-A6C8-06 7 2962953 2962953 G A CARD11 Missense_Mutation p.S652L 0.26 tolerated(0.11) probably_damaging(0.972) TCGA-GF-A6C8-06 7 4260943 4260943 G A SDK1 Missense_Mutation p.G1925E 0.26 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C8-06 7 44040578 44040578 G A SPDYE1 5'UTR 0.38 TCGA-GF-A6C8-06 7 48315048 48315048 C T ABCA13 Missense_Mutation p.P1929S 0.30 benign(0.007) TCGA-GF-A6C8-06 7 65439400 65439400 G A GUSB Missense_Mutation p.H425Y 0.41 deleterious(0.01) probably_damaging(0.927) TCGA-GF-A6C8-06 7 75988186 75988186 G A YWHAG 5'UTR 0.57 TCGA-GF-A6C8-06 7 77256186 77256186 C T PTPN12 Missense_Mutation p.S397L 0.43 deleterious(0) benign(0.423) TCGA-GF-A6C8-06 7 79833063 79833063 C T GNAI1 Missense_Mutation p.P169S 0.23 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 7 87607726 87607726 C T ADAM22 Missense_Mutation p.H108Y 0.30 deleterious(0) probably_damaging(0.956) TCGA-GF-A6C8-06 7 95157616 95157616 G A ASB4 Splice_Site p.X326_splice 0.24 TCGA-GF-A6C8-06 7 98586570 98586570 C T TRRAP Missense_Mutation p.S3195L 0.31 possibly_damaging(0.835) TCGA-GF-A6C8-06 8 110100122 110100122 C T TRHR Silent p.I127I 0.32 TCGA-GF-A6C8-06 8 113662424 113662424 G T CSMD3 Missense_Mutation p.N1053K 0.35 deleterious(0.03) probably_damaging(0.962) TCGA-GF-A6C8-06 8 11994698 11994698 C T USP17L2 Silent p.R524R 0.18 TCGA-GF-A6C8-06 8 125025711 125025711 C T FER1L6 Missense_Mutation p.S621L 0.32 tolerated(0.13) benign(0.118) TCGA-GF-A6C8-06 8 139269000 139269000 C T FAM135B Missense_Mutation p.M100I 0.38 tolerated(0.53) benign(0) TCGA-GF-A6C8-06 8 139856364 139856364 G A COL22A1 Silent p.R232R 0.31 TCGA-GF-A6C8-06 8 14181658 14181658 G A SGCZ Missense_Mutation p.S97F 0.32 deleterious(0) probably_damaging(0.961) TCGA-GF-A6C8-06 8 146156843 146156843 G A ZNF16 Nonsense_Mutation p.Q444* 0.27 TCGA-GF-A6C8-06 8 22414247 22414247 C T SORBS3 Silent p.T80T 0.35 TCGA-GF-A6C8-06 8 22548009 22548009 G A EGR3 Missense_Mutation p.P381S 0.26 tolerated_low_confidence(0.42) possibly_damaging(0.641) TCGA-GF-A6C8-06 8 23307497 23307497 G A ENTPD4 5'UTR 0.28 TCGA-GF-A6C8-06 8 24359025 24359025 G A ADAM7 Missense_Mutation p.G715E 0.44 deleterious(0.02) probably_damaging(0.952) TCGA-GF-A6C8-06 8 24366093 24366093 G A ADAM7 3'UTR 0.20 TCGA-GF-A6C8-06 8 27614277 27614277 C T CCDC25 Missense_Mutation p.D43N 0.27 deleterious(0.02) benign(0.434) TCGA-GF-A6C8-06 8 29194636 29194636 G A DUSP4 Silent p.F364F 0.17 TCGA-GF-A6C8-06 8 30854011 30854011 G A PURG 3'UTR 0.38 TCGA-GF-A6C8-06 8 38003905 38003905 C T STAR Missense_Mutation p.E123K 0.34 deleterious(0) possibly_damaging(0.517) TCGA-GF-A6C8-06 8 39525628 39525628 G A ADAM18 Missense_Mutation p.G480S 0.32 deleterious(0.04) probably_damaging(1) TCGA-GF-A6C8-06 8 49985379 49985379 C T C8orf22 5'UTR 0.34 TCGA-GF-A6C8-06 8 65527628 65527628 G A CYP7B1 Missense_Mutation p.P338S 0.33 tolerated(0.56) benign(0.003) TCGA-GF-A6C8-06 8 67813497 67813497 G A MCMDC2 Missense_Mutation p.M561I 0.25 tolerated(0.13) benign(0.004) TCGA-GF-A6C8-06 8 69028074 69028074 G A PREX2 Missense_Mutation p.G1078E 0.37 tolerated(0.05) benign(0.344) TCGA-GF-A6C8-06 8 73850273 73850273 C T KCNB2 Missense_Mutation p.H895Y 0.32 deleterious_low_confidence(0) benign(0.3) TCGA-GF-A6C8-06 8 99468060 99468060 G A STK3 3'UTR 0.24 TCGA-GF-A6C8-06 9 104193084 104193084 C T ALDOB Missense_Mutation p.G29E 0.37 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 9 104449255 104449255 G A GRIN3A Silent p.S309S 0.53 TCGA-GF-A6C8-06 9 104499685 104499685 C T GRIN3A Missense_Mutation p.V193M 0.47 deleterious(0) probably_damaging(0.981) TCGA-GF-A6C8-06 9 1057193 1057193 T C DMRT2 Missense_Mutation p.S536P 0.11 deleterious_low_confidence(0.02) benign(0.02) TCGA-GF-A6C8-06 9 119115066 119115066 C T PAPPA Missense_Mutation p.P1349L 0.38 deleterious(0.03) possibly_damaging(0.908) TCGA-GF-A6C8-06 9 125315755 125315755 C T OR1N2 Missense_Mutation p.H103Y 0.06 tolerated(0.65) benign(0) TCGA-GF-A6C8-06 9 131046889 131046889 A T SWI5 Missense_Mutation p.E176V 0.19 deleterious(0) probably_damaging(0.987) TCGA-GF-A6C8-06 9 139100718 139100718 G A QSOX2 Silent p.F651F 0.09 TCGA-GF-A6C8-06 9 14859437 14859437 G A FREM1 Silent p.V125V 0.47 TCGA-GF-A6C8-06 9 21367982 21367982 T A IFNA13 Missense_Mutation p.M10L 0.42 tolerated(0.09) benign(0.009) TCGA-GF-A6C8-06 9 35805668 35805668 G A NPR2 Splice_Site p.X683_splice 0.45 TCGA-GF-A6C8-06 9 35805669 35805669 T A NPR2 Splice_Site p.X683_splice 0.44 TCGA-GF-A6C8-06 9 8507298 8507298 T C PTPRD Intron 0.27 TCGA-GF-A6C8-06 9 86590357 86590371 CATAAACTGTTGGGA - HNRNPK Intron 0.32 TCGA-GF-A6C8-06 9 91063862 91063862 C T SPIN1 Missense_Mutation p.A20V 0.08 tolerated(0.27) benign(0.011) TCGA-GF-A6C8-06 9 96425891 96425891 T A PHF2 Missense_Mutation p.F637L 0.11 tolerated(0.37) unknown(0) TCGA-GF-A6C8-06 9 99083600 99083600 G A SLC35D2 Missense_Mutation p.S313F 0.10 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C8-06 X 101096500 101096500 G A NXF5 Missense_Mutation p.P91S 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-GF-A6C8-06 X 102931922 102931922 C T MORF4L2 Missense_Mutation p.G12R 0.27 deleterious(0.03) benign(0.196) TCGA-GF-A6C8-06 X 110576366 110576366 C T DCX Missense_Mutation p.D322N 0.27 deleterious(0.04) probably_damaging(0.977) TCGA-GF-A6C8-06 X 115304727 115304727 C T AGTR2 3'UTR 0.27 TCGA-GF-A6C8-06 X 117033027 117033027 C T KLHL13 Silent p.E607E 0.34 TCGA-GF-A6C8-06 X 118221822 118221822 G A KIAA1210 Missense_Mutation p.S1124F 0.28 tolerated(0.17) possibly_damaging(0.864) TCGA-GF-A6C8-06 X 119678367 119678367 C T CUL4B Missense_Mutation p.R369Q 0.27 tolerated(0.15) benign(0.092) TCGA-GF-A6C8-06 X 123234505 123234505 T G STAG2 3'UTR 0.29 TCGA-GF-A6C8-06 X 132161665 132161665 A G USP26 Missense_Mutation p.L195S 0.38 tolerated(0.11) benign(0.169) TCGA-GF-A6C8-06 X 134991082 134991082 G A SAGE1 Missense_Mutation p.D501N 0.41 tolerated(0.28) possibly_damaging(0.908) TCGA-GF-A6C8-06 X 142967493 142967493 C T UBE2NL Silent p.S97S 0.40 TCGA-GF-A6C8-06 X 148037939 148037939 C T AFF2 Silent p.I788I 0.36 TCGA-GF-A6C8-06 X 149826472 149826472 G A MTM1 Nonsense_Mutation p.W411* 0.28 TCGA-GF-A6C8-06 X 153069653 153069653 C T PDZD4 Missense_Mutation p.E489K 0.54 deleterious(0.01) benign(0.043) TCGA-GF-A6C8-06 X 153668801 153668801 C T GDI1 Missense_Mutation p.P223S 0.37 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C8-06 X 153706645 153706645 T G LAGE3 Silent p.T98T 0.38 TCGA-GF-A6C8-06 X 1540589 1540589 G A ASMTL Missense_Mutation p.H403Y 0.27 tolerated(0.53) possibly_damaging(0.74) TCGA-GF-A6C8-06 X 15794968 15794968 A G CA5B Silent p.Q250Q 0.33 TCGA-GF-A6C8-06 X 19377618 19377618 G T PDHA1 Silent p.V378V 0.35 TCGA-GF-A6C8-06 X 19425358 19425358 C T MAP3K15 Missense_Mutation p.D598N 0.27 tolerated(0.49) benign(0.02) TCGA-GF-A6C8-06 X 19983592 19983592 G A CXorf23 Missense_Mutation p.R282C 0.25 tolerated(0.12) benign(0.049) TCGA-GF-A6C8-06 X 23018229 23018229 G A DDX53 Missense_Mutation p.G19R 0.37 tolerated_low_confidence(0.57) benign(0.001) TCGA-GF-A6C8-06 X 23397738 23397738 C T PTCHD1 Missense_Mutation p.P128S 0.38 tolerated(0.64) benign(0.002) TCGA-GF-A6C8-06 X 23410852 23410852 C T PTCHD1 Missense_Mutation p.S406F 0.39 deleterious(0.03) possibly_damaging(0.837) TCGA-GF-A6C8-06 X 29301170 29301170 T C IL1RAPL1 Silent p.L66L 0.42 TCGA-GF-A6C8-06 X 3007569 3007569 C T ARSF Missense_Mutation p.S288F 0.28 deleterious(0) probably_damaging(1) TCGA-GF-A6C8-06 X 3239578 3239578 G A MXRA5 Missense_Mutation p.S1383L 0.21 tolerated(0.14) benign(0.001) TCGA-GF-A6C8-06 X 34148982 34148982 C T FAM47A Missense_Mutation p.E472K 0.30 tolerated(0.06) probably_damaging(0.956) TCGA-GF-A6C8-06 X 37027532 37027532 G A FAM47C Missense_Mutation p.G350E 0.30 tolerated(0.34) probably_damaging(0.951) TCGA-GF-A6C8-06 X 39932369 39932369 C T BCOR Missense_Mutation p.E744K 0.29 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C8-06 X 53112065 53112065 G A TSPYL2 Missense_Mutation p.E129K 0.19 tolerated(0.19) benign(0.421) TCGA-GF-A6C8-06 X 63444798 63444798 C T ASB12 Missense_Mutation p.D245N 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-GF-A6C8-06 X 64957105 64957105 G A MSN Missense_Mutation p.A386T 0.45 tolerated(0.09) possibly_damaging(0.58) TCGA-GF-A6C8-06 X 73960920 73960920 T C KIAA2022 Missense_Mutation p.T1158A 0.30 tolerated(0.14) benign(0.007) TCGA-GF-A6C8-06 X 76939417 76939417 C T ATRX Missense_Mutation p.R444Q 0.31 benign(0.308) TCGA-GF-A6C8-06 X 77126357 77126357 C T MAGT1 Missense_Mutation p.R145K 0.33 tolerated(1) benign(0) TCGA-GF-A6C8-06 X 79939655 79939655 G A BRWD3 Nonsense_Mutation p.Q1363* 0.18 TCGA-GF-A6C8-06 X 85404081 85404081 G A DACH2 Missense_Mutation p.E153K 0.44 deleterious(0) possibly_damaging(0.902) TCGA-GF-A6C9-06 10 100152213 100152213 G A PYROXD2 Silent p.I346I 0.17 TCGA-GF-A6C9-06 10 101578623 101578623 T A ABCC2 Missense_Mutation p.L783H 0.19 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 10 102035210 102035210 A C BLOC1S2 3'UTR 0.09 TCGA-GF-A6C9-06 10 103340154 103340154 G A POLL Missense_Mutation p.A405V 0.19 deleterious(0.03) benign(0.002) TCGA-GF-A6C9-06 10 103907109 103907109 C T PPRC1 Missense_Mutation p.R1454W 0.09 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-GF-A6C9-06 10 104165167 104165167 C T PSD Silent p.G754G 0.13 TCGA-GF-A6C9-06 10 104230724 104230724 A T TMEM180 Missense_Mutation p.N185I 0.11 deleterious(0) probably_damaging(0.954) TCGA-GF-A6C9-06 10 105215117 105215117 G A CALHM1 Silent p.L315L 0.10 TCGA-GF-A6C9-06 10 105362500 105362500 G A SH3PXD2A Silent p.L797L 0.24 TCGA-GF-A6C9-06 10 105819914 105819914 C T COL17A1 Silent p.G368G 0.25 TCGA-GF-A6C9-06 10 106970980 106970980 C T SORCS3 Missense_Mutation p.L783F 0.30 tolerated(0.1) benign(0.013) TCGA-GF-A6C9-06 10 114171665 114171665 T C ACSL5 Silent p.A348A 0.14 TCGA-GF-A6C9-06 10 11505081 11505081 G A USP6NL Missense_Mutation p.P633S 0.14 tolerated_low_confidence(0.83) benign(0.006) TCGA-GF-A6C9-06 10 115348067 115348067 C T HABP2 Missense_Mutation p.T541I 0.08 deleterious(0) probably_damaging(0.987) TCGA-GF-A6C9-06 10 115391348 115391348 C T NRAP Missense_Mutation p.E588K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 10 115413821 115413821 C T NRAP Missense_Mutation p.E142K 0.09 deleterious(0.04) benign(0.012) TCGA-GF-A6C9-06 10 116056765 116056765 C T AFAP1L2 Missense_Mutation p.G801D 0.20 deleterious(0.03) probably_damaging(0.973) TCGA-GF-A6C9-06 10 116060253 116060253 G A AFAP1L2 Missense_Mutation p.P580L 0.18 tolerated(0.18) benign(0.001) TCGA-GF-A6C9-06 10 116068249 116068249 C T AFAP1L2 Missense_Mutation p.A304T 0.11 deleterious(0.04) possibly_damaging(0.557) TCGA-GF-A6C9-06 10 116307445 116307445 G A ABLIM1 Missense_Mutation p.S255F 0.18 deleterious(0) possibly_damaging(0.529) TCGA-GF-A6C9-06 10 117075079 117075079 G A ATRNL1 Missense_Mutation p.G957E 0.20 tolerated(0.8) benign(0.034) TCGA-GF-A6C9-06 10 117228820 117228820 C T ATRNL1 Missense_Mutation p.S1212F 0.15 deleterious(0) possibly_damaging(0.83) TCGA-GF-A6C9-06 10 117704252 117704252 C T ATRNL1 Nonsense_Mutation p.R1368* 0.15 TCGA-GF-A6C9-06 10 118203962 118203962 C T PNLIPRP3 Silent p.I131I 0.17 TCGA-GF-A6C9-06 10 118383497 118383497 G A PNLIPRP2 Missense_Mutation p.E31K 0.13 tolerated(0.1) benign(0.008) TCGA-GF-A6C9-06 10 118891747 118891747 G A VAX1 3'Flank 0.12 TCGA-GF-A6C9-06 10 12160806 12160806 G A DHTKD1 Missense_Mutation p.E821K 0.14 tolerated(0.15) benign(0.01) TCGA-GF-A6C9-06 10 121692677 121692677 T C SEC23IP Silent p.Y973Y 0.15 TCGA-GF-A6C9-06 10 123683804 123683804 A C ATE1 Missense_Mutation p.D49E 0.07 deleterious(0) benign(0.273) TCGA-GF-A6C9-06 10 123842521 123842521 C T TACC2 Missense_Mutation p.A169V 0.13 benign(0.001) TCGA-GF-A6C9-06 10 123842555 123842555 G A TACC2 Silent p.K180K 0.19 TCGA-GF-A6C9-06 10 123845187 123845187 C T TACC2 Missense_Mutation p.P1058S 0.14 benign(0.03) TCGA-GF-A6C9-06 10 123970459 123970459 G A TACC2 Silent p.T2173T 0.11 TCGA-GF-A6C9-06 10 123985890 123985890 G A TACC2 Missense_Mutation p.D2540N 0.32 possibly_damaging(0.863) TCGA-GF-A6C9-06 10 124402704 124402704 C T DMBT1 Silent p.F2344F 0.08 TCGA-GF-A6C9-06 10 124457559 124457559 C T C10orf120 Missense_Mutation p.G233E 0.21 tolerated(0.78) benign(0.124) TCGA-GF-A6C9-06 10 124598622 124598622 G A CUZD1 Missense_Mutation p.S120F 0.05 deleterious(0.03) benign(0.119) TCGA-GF-A6C9-06 10 124598641 124598641 G A CUZD1 Missense_Mutation p.P114S 0.06 tolerated(0.18) probably_damaging(0.936) TCGA-GF-A6C9-06 10 127460919 127460919 G A MMP21 Missense_Mutation p.H283Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 10 128114581 128114581 G A C10orf90 Silent p.L680L 0.18 TCGA-GF-A6C9-06 10 129172423 129172423 C T DOCK1 Missense_Mutation p.T1186I 0.15 tolerated(0.07) possibly_damaging(0.86) TCGA-GF-A6C9-06 10 129906093 129906093 C T MKI67 Silent p.K1337K 0.17 TCGA-GF-A6C9-06 10 131639117 131639117 G A EBF3 Missense_Mutation p.P509S 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.536) TCGA-GF-A6C9-06 10 131640552 131640552 G A EBF3 Silent p.I391I 0.12 TCGA-GF-A6C9-06 10 13167428 13167428 C T OPTN Missense_Mutation p.L337F 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 10 133769225 133769225 A T PPP2R2D Missense_Mutation p.M343L 0.15 tolerated(0.12) benign(0.011) TCGA-GF-A6C9-06 10 134628401 134628401 C T TTC40 Missense_Mutation p.E2379K 0.08 tolerated(0.22) benign(0.442) TCGA-GF-A6C9-06 10 134660750 134660750 C T TTC40 Missense_Mutation p.D2010N 0.15 tolerated(0.07) benign(0.368) TCGA-GF-A6C9-06 10 13483668 13483668 C T BEND7 Intron 0.16 TCGA-GF-A6C9-06 10 13534868 13534868 G C BEND7 Missense_Mutation p.Q142E 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.547) TCGA-GF-A6C9-06 10 15255223 15255223 G A FAM171A1 Silent p.L788L 0.18 TCGA-GF-A6C9-06 10 15614285 15614285 G A ITGA8 Silent p.L854L 0.14 TCGA-GF-A6C9-06 10 15634241 15634241 G A ITGA8 Silent p.F758F 0.16 TCGA-GF-A6C9-06 10 18242119 18242119 G A SLC39A12 Splice_Site 0.17 TCGA-GF-A6C9-06 10 18266907 18266907 G A SLC39A12 Silent p.R276R 0.17 TCGA-GF-A6C9-06 10 18823030 18823030 G A CACNB2 Silent p.R360R 0.20 TCGA-GF-A6C9-06 10 18828608 18828608 G A CACNB2 Silent p.R646R 0.18 TCGA-GF-A6C9-06 10 21414932 21414932 G A C10orf113 Silent p.F96F 0.15 TCGA-GF-A6C9-06 10 21414942 21414942 C T C10orf113 Missense_Mutation p.R93K 0.17 tolerated(0.16) possibly_damaging(0.567) TCGA-GF-A6C9-06 10 21415020 21415020 C T C10orf113 Missense_Mutation p.G67D 0.14 deleterious_low_confidence(0.01) benign(0.412) TCGA-GF-A6C9-06 10 22617070 22617070 C T BMI1 Missense_Mutation p.R145W 0.09 deleterious(0.01) benign(0.004) TCGA-GF-A6C9-06 10 24508713 24508713 G A KIAA1217 Missense_Mutation p.E77K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-GF-A6C9-06 10 24508742 24508742 G A KIAA1217 Missense_Mutation p.M86I 0.12 deleterious(0.05) probably_damaging(0.98) TCGA-GF-A6C9-06 10 24784106 24784106 G A KIAA1217 Silent p.R605R 0.17 TCGA-GF-A6C9-06 10 24813592 24813592 C T KIAA1217 Missense_Mutation p.P933S 0.17 tolerated(0.11) possibly_damaging(0.46) TCGA-GF-A6C9-06 10 24832469 24832469 C T KIAA1217 Missense_Mutation p.P1424S 0.12 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 10 25273711 25273711 C T ENKUR Missense_Mutation p.D240N 0.14 deleterious(0.02) benign(0.062) TCGA-GF-A6C9-06 10 26241127 26241127 G A MYO3A Missense_Mutation p.G30R 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 10 26414446 26414446 A T MYO3A Missense_Mutation p.R675W 0.13 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 10 26414447 26414447 G A MYO3A Missense_Mutation p.R675K 0.13 deleterious(0) probably_damaging(0.987) TCGA-GF-A6C9-06 10 26462693 26462693 C T MYO3A Missense_Mutation p.S1167F 0.19 deleterious(0.02) benign(0.005) TCGA-GF-A6C9-06 10 26462937 26462937 G A MYO3A Silent p.R1248R 0.19 TCGA-GF-A6C9-06 10 26589851 26589851 C T GAD2 Silent p.F573F 0.09 TCGA-GF-A6C9-06 10 27538558 27538558 C G RP11-85G18.6 Intron 0.09 TCGA-GF-A6C9-06 10 27702598 27702598 G A PTCHD3 Silent p.S194S 0.17 TCGA-GF-A6C9-06 10 28270426 28270426 G A ARMC4 Missense_Mutation p.S302L 0.24 deleterious(0.01) benign(0.242) TCGA-GF-A6C9-06 10 28272885 28272885 G A ARMC4 Nonsense_Mutation p.R236* 0.15 TCGA-GF-A6C9-06 10 28409221 28409221 C T MPP7 Silent p.Q263Q 0.12 TCGA-GF-A6C9-06 10 30315789 30315789 C T KIAA1462 Silent p.V1096V 0.17 TCGA-GF-A6C9-06 10 30317782 30317782 C T KIAA1462 Missense_Mutation p.R432Q 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 10 30915752 30915752 G A LYZL2 Silent p.F77F 0.09 TCGA-GF-A6C9-06 10 31809256 31809256 G A ZEB1 Silent p.K332K 0.10 TCGA-GF-A6C9-06 10 33475395 33475395 G A NRP1 Missense_Mutation p.S695F 0.09 deleterious(0.04) possibly_damaging(0.842) TCGA-GF-A6C9-06 10 33559750 33559750 C T NRP1 Missense_Mutation p.E95K 0.26 deleterious(0.01) possibly_damaging(0.531) TCGA-GF-A6C9-06 10 37430875 37430875 C T ANKRD30A Silent p.F294F 0.30 TCGA-GF-A6C9-06 10 37433933 37433933 C T ANKRD30A Silent p.F412F 0.29 TCGA-GF-A6C9-06 10 37451751 37451751 G A ANKRD30A Silent p.L603L 0.41 TCGA-GF-A6C9-06 10 43606783 43606783 C T RET Silent p.I464I 0.27 TCGA-GF-A6C9-06 10 43609989 43609989 C T RET Silent p.I647I 0.17 TCGA-GF-A6C9-06 10 43659416 43659416 C T CSGALNACT2 Silent p.V361V 0.12 TCGA-GF-A6C9-06 10 44873329 44873329 C T CXCL12 Silent p.G97G 0.31 TCGA-GF-A6C9-06 10 45938899 45938899 G A ALOX5 Missense_Mutation p.G496D 0.24 tolerated(0.16) benign(0.001) TCGA-GF-A6C9-06 10 48370683 48370683 G A ZNF488 Missense_Mutation p.E51K 0.08 tolerated(0.14) probably_damaging(0.959) TCGA-GF-A6C9-06 10 48371293 48371293 C T ZNF488 Missense_Mutation p.S254F 0.08 deleterious(0) probably_damaging(0.979) TCGA-GF-A6C9-06 10 48371380 48371380 C T ZNF488 Missense_Mutation p.S283F 0.14 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 10 48382187 48382187 G A RBP3 Silent p.F1154F 0.11 TCGA-GF-A6C9-06 10 48389122 48389122 C T RBP3 Missense_Mutation p.E586K 0.21 tolerated(0.1) possibly_damaging(0.635) TCGA-GF-A6C9-06 10 48414348 48414348 C T GDF2 Missense_Mutation p.D174N 0.12 tolerated(0.08) possibly_damaging(0.679) TCGA-GF-A6C9-06 10 48429259 48429259 G A GDF10 Silent p.I209I 0.19 TCGA-GF-A6C9-06 10 49448514 49448514 C T FRMPD2 Missense_Mutation p.E197K 0.08 deleterious(0.01) possibly_damaging(0.507) TCGA-GF-A6C9-06 10 49459655 49459655 G A FRMPD2 Silent p.S35S 0.20 TCGA-GF-A6C9-06 10 49763594 49763594 C T ARHGAP22 Missense_Mutation p.G79E 0.16 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 10 50121483 50121483 G A LRRC18 Silent p.L240L 0.16 TCGA-GF-A6C9-06 10 50315671 50315671 C T VSTM4 Nonsense_Mutation p.W142* 0.25 TCGA-GF-A6C9-06 10 50315892 50315892 G A VSTM4 Silent p.F68F 0.23 TCGA-GF-A6C9-06 10 50574211 50574211 C T DRGX Missense_Mutation p.E253K 0.16 tolerated_low_confidence(0.34) benign(0) TCGA-GF-A6C9-06 10 50954832 50954832 C T OGDHL Silent p.T420T 0.09 TCGA-GF-A6C9-06 10 51472605 51472605 T A AGAP7 Silent p.I125I 0.09 TCGA-GF-A6C9-06 10 52005005 52005005 C T ASAH2 Missense_Mutation p.G113R 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 10 5227087 5227087 C T AKR1CL1 5'UTR 0.20 TCGA-GF-A6C9-06 10 5496317 5496317 C T NET1 Silent p.V286V 0.19 TCGA-GF-A6C9-06 10 55566428 55566428 C T PCDH15 Missense_Mutation p.E1653K 0.13 deleterious_low_confidence(0.02) benign(0) TCGA-GF-A6C9-06 10 55582559 55582559 C T PCDH15 Missense_Mutation p.E1645K 0.18 deleterious_low_confidence(0.01) benign(0.271) TCGA-GF-A6C9-06 10 5567002 5567002 G A CALML3 5'UTR 0.22 TCGA-GF-A6C9-06 10 6063631 6063631 C T IL2RA Nonsense_Mutation p.W131* 0.17 TCGA-GF-A6C9-06 10 6066262 6066262 C T IL2RA Silent p.R104R 0.15 TCGA-GF-A6C9-06 10 61830498 61830498 C T ANK3 Missense_Mutation p.E3381K 0.13 benign(0.052) TCGA-GF-A6C9-06 10 61833636 61833636 C T ANK3 Missense_Mutation p.E2335K 0.09 probably_damaging(0.959) TCGA-GF-A6C9-06 10 61833876 61833876 G A ANK3 Missense_Mutation p.H2255Y 0.15 benign(0.043) TCGA-GF-A6C9-06 10 61834644 61834644 C T ANK3 Missense_Mutation p.E1999K 0.09 probably_damaging(0.956) TCGA-GF-A6C9-06 10 61834712 61834712 G A ANK3 Missense_Mutation p.S1976L 0.14 benign(0) TCGA-GF-A6C9-06 10 63170061 63170061 G A TMEM26 3'UTR 0.10 TCGA-GF-A6C9-06 10 63450376 63450376 T G C10orf107 Silent p.T95T 0.09 TCGA-GF-A6C9-06 10 6472805 6472805 C T PRKCQ Silent p.R644R 0.16 TCGA-GF-A6C9-06 10 67748493 67748493 G A CTNNA3 Missense_Mutation p.S741L 0.07 tolerated(0.18) unknown(0) TCGA-GF-A6C9-06 10 68857449 68857449 G A LRRTM3 Silent p.T547T 0.08 TCGA-GF-A6C9-06 10 71849911 71849911 G A H2AFY2 Missense_Mutation p.E90K 0.08 deleterious(0) possibly_damaging(0.76) TCGA-GF-A6C9-06 10 71880335 71880335 G A AIFM2 Silent p.I145I 0.09 TCGA-GF-A6C9-06 10 72324144 72324144 G A PALD1 Missense_Mutation p.E763K 0.11 deleterious(0) benign(0.12) TCGA-GF-A6C9-06 10 72358406 72358406 C T PRF1 Silent p.R357R 0.10 TCGA-GF-A6C9-06 10 73039766 73039766 G A UNC5B Missense_Mutation p.D90N 0.08 deleterious(0.02) benign(0.252) TCGA-GF-A6C9-06 10 73551077 73551077 G A CDH23 5'Flank 0.14 TCGA-GF-A6C9-06 10 73553298 73553298 C T CDH23 5'Flank 0.23 TCGA-GF-A6C9-06 10 74658690 74658690 G A OIT3 Silent p.G110G 0.11 TCGA-GF-A6C9-06 10 74690363 74690363 C T OIT3 Missense_Mutation p.P479S 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-GF-A6C9-06 10 74828607 74828607 G A P4HA1 Missense_Mutation p.P154S 0.09 tolerated(0.22) probably_damaging(0.938) TCGA-GF-A6C9-06 10 7786873 7786873 G A ITIH2 Missense_Mutation p.G843E 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 10 7866502 7866502 C T TAF3 Missense_Mutation p.P130S 0.15 deleterious(0.03) benign(0.289) TCGA-GF-A6C9-06 10 78850224 78850224 T C KCNMA1 Missense_Mutation p.N423S 0.19 tolerated(0.51) possibly_damaging(0.603) TCGA-GF-A6C9-06 10 78870098 78870098 C T KCNMA1 Missense_Mutation p.E322K 0.09 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 10 81372946 81372946 G A SFTPA1 Silent p.G113G 0.06 TCGA-GF-A6C9-06 10 81701762 81701762 T C SFTPD Silent p.G166G 0.08 TCGA-GF-A6C9-06 10 85961661 85961661 C T CDHR1 Silent p.I208I 0.19 TCGA-GF-A6C9-06 10 860738 860738 G A LARP4B Missense_Mutation p.P625S 0.30 tolerated(0.4) benign(0.019) TCGA-GF-A6C9-06 10 87487698 87487698 C T GRID1 Missense_Mutation p.E483K 0.09 deleterious(0.02) benign(0.041) TCGA-GF-A6C9-06 10 88703313 88703313 C T MMRN2 Missense_Mutation p.D410N 0.12 tolerated(0.16) benign(0.019) TCGA-GF-A6C9-06 10 88703314 88703314 C T MMRN2 Silent p.V409V 0.13 TCGA-GF-A6C9-06 10 88768116 88768116 C T RP11-96C23.10 3'Flank 0.11 TCGA-GF-A6C9-06 10 90435980 90435980 G A LIPF Silent p.G311G 0.12 TCGA-GF-A6C9-06 10 95093536 95093536 C T MYOF Silent p.Q1566Q 0.14 TCGA-GF-A6C9-06 10 95721275 95721275 C T PIPSL RNA 0.11 TCGA-GF-A6C9-06 10 95791484 95791484 G A PLCE1 Silent p.K227K 0.12 TCGA-GF-A6C9-06 10 96022469 96022469 G A PLCE1 Missense_Mutation p.E1345K 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-GF-A6C9-06 10 96698487 96698487 C T CYP2C9 Silent p.L16L 0.08 TCGA-GF-A6C9-06 10 96707637 96707637 C T CYP2C9 Missense_Mutation p.L195F 0.11 deleterious(0.01) benign(0.371) TCGA-GF-A6C9-06 10 96741069 96741069 C T CYP2C9 Missense_Mutation p.T364I 0.17 tolerated(0.32) benign(0.344) TCGA-GF-A6C9-06 10 97028545 97028545 G A PDLIM1 Missense_Mutation p.S108F 0.07 deleterious(0) probably_damaging(0.966) TCGA-GF-A6C9-06 10 97956793 97956793 G A BLNK Silent p.S374S 0.12 TCGA-GF-A6C9-06 10 97956801 97956801 G A BLNK Missense_Mutation p.R372W 0.19 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 10 98002504 98002504 C T BLNK Silent p.R50R 0.22 TCGA-GF-A6C9-06 10 98188504 98188504 C T TLL2 Silent p.G174G 0.20 TCGA-GF-A6C9-06 10 99416653 99416653 C T PI4K2A Missense_Mutation p.L252F 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-GF-A6C9-06 10 99695991 99695991 G A CRTAC1 Silent p.A119A 0.18 TCGA-GF-A6C9-06 11 100211879 100211879 C T CNTN5 Missense_Mutation p.S991F 0.27 tolerated(0.12) possibly_damaging(0.819) TCGA-GF-A6C9-06 11 100226930 100226930 G A CNTN5 Missense_Mutation p.M1094I 0.24 tolerated(0.7) benign(0) TCGA-GF-A6C9-06 11 101342042 101342042 G A TRPC6 Missense_Mutation p.P761S 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-GF-A6C9-06 11 101353791 101353791 C T TRPC6 Missense_Mutation p.G467S 0.15 tolerated(0.06) possibly_damaging(0.706) TCGA-GF-A6C9-06 11 102195416 102195416 G C BIRC3 Missense_Mutation p.G59A 0.11 deleterious(0) probably_damaging(0.988) TCGA-GF-A6C9-06 11 102487583 102487583 G A MMP20 Missense_Mutation p.P112S 0.11 deleterious(0.01) possibly_damaging(0.47) TCGA-GF-A6C9-06 11 102562710 102562710 T G MMP27 Missense_Mutation p.Q443H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 11 102592434 102592434 G A MMP8 Missense_Mutation p.A136V 0.19 deleterious(0) probably_damaging(0.984) TCGA-GF-A6C9-06 11 102649963 102649963 C T MMP10 Missense_Mutation p.M159I 0.14 deleterious(0.02) possibly_damaging(0.712) TCGA-GF-A6C9-06 11 102651289 102651289 G A MMP10 Silent p.L12L 0.20 TCGA-GF-A6C9-06 11 103907782 103907782 G A DDI1 Missense_Mutation p.D78N 0.10 tolerated(0.15) benign(0.071) TCGA-GF-A6C9-06 11 104874042 104874042 G A CASP5 Missense_Mutation p.R181C 0.15 tolerated(0.18) benign(0.005) TCGA-GF-A6C9-06 11 10508849 10508849 G A AMPD3 Missense_Mutation p.E302K 0.12 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 11 105924522 105924522 G A KBTBD3 Silent p.F298F 0.12 TCGA-GF-A6C9-06 11 10622534 10622534 C T MRVI1 Missense_Mutation p.D650N 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 11 107422621 107422621 C T ALKBH8 Missense_Mutation p.E205K 0.13 tolerated(0.91) benign(0.002) TCGA-GF-A6C9-06 11 107578697 107578697 G A SLN 5'UTR 0.13 TCGA-GF-A6C9-06 11 107832711 107832711 A G RAB39A Silent p.G89G 0.14 TCGA-GF-A6C9-06 11 108383365 108383365 C T EXPH5 Missense_Mutation p.V957I 0.07 tolerated(0.23) benign(0.139) TCGA-GF-A6C9-06 11 1104127 1104127 G A MUC2 Missense_Mutation p.S2773N 0.21 unknown(0) TCGA-GF-A6C9-06 11 111915908 111915908 T C DLAT Missense_Mutation p.V415A 0.15 tolerated(0.72) benign(0.001) TCGA-GF-A6C9-06 11 111943906 111943906 G A PIH1D2 5'UTR 0.11 TCGA-GF-A6C9-06 11 112084550 112084550 C T BCO2 Missense_Mutation p.T433I 0.09 deleterious(0.01) possibly_damaging(0.742) TCGA-GF-A6C9-06 11 113856811 113856811 G A HTR3A Missense_Mutation p.G213R 0.08 deleterious(0) probably_damaging(0.988) TCGA-GF-A6C9-06 11 113860193 113860193 G A HTR3A Missense_Mutation p.G420E 0.19 tolerated(0.52) benign(0.012) TCGA-GF-A6C9-06 11 114393665 114393665 G A NXPE1 Silent p.L206L 0.30 TCGA-GF-A6C9-06 11 114441696 114441696 T A NXPE4 Silent p.G533G 0.20 TCGA-GF-A6C9-06 11 115080361 115080361 G A CADM1 Silent p.I337I 0.16 TCGA-GF-A6C9-06 11 116692126 116692126 C T APOA4 Silent p.V216V 0.09 TCGA-GF-A6C9-06 11 116692204 116692204 G A APOA4 Silent p.I190I 0.07 TCGA-GF-A6C9-06 11 116706542 116706542 C T APOA1 Silent p.K262K 0.22 TCGA-GF-A6C9-06 11 117222528 117222528 T C CEP164 Missense_Mutation p.Y73H 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 117352780 117352780 G A DSCAML1 Silent p.I879I 0.13 TCGA-GF-A6C9-06 11 117710639 117710639 G A FXYD6 Intron 0.14 TCGA-GF-A6C9-06 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.18 tolerated(0.16) benign(0.04) TCGA-GF-A6C9-06 11 118344279 118344279 C T KMT2A Missense_Mutation p.S802F 0.21 possibly_damaging(0.564) TCGA-GF-A6C9-06 11 119054068 119054068 C T NLRX1 Missense_Mutation p.P950S 0.12 deleterious(0.03) possibly_damaging(0.761) TCGA-GF-A6C9-06 11 119244029 119244029 G A USP2 Silent p.V54V 0.09 TCGA-GF-A6C9-06 11 120918248 120918248 C T TBCEL Missense_Mutation p.L49F 0.08 deleterious(0.01) possibly_damaging(0.868) TCGA-GF-A6C9-06 11 121454175 121454175 C T SORL1 Missense_Mutation p.H1197Y 0.13 deleterious(0.02) possibly_damaging(0.85) TCGA-GF-A6C9-06 11 1219493 1219493 G A MUC5AC Splice_Site 0.53 TCGA-GF-A6C9-06 11 1219494 1219494 G A MUC5AC Intron 0.53 TCGA-GF-A6C9-06 11 122928507 122928507 G A HSPA8 Missense_Mutation p.P626S 0.12 tolerated_low_confidence(0.26) possibly_damaging(0.641) TCGA-GF-A6C9-06 11 123676125 123676125 C T OR6M1 Silent p.R311R 0.08 TCGA-GF-A6C9-06 11 123753850 123753850 G A TMEM225 Silent p.L225L 0.13 TCGA-GF-A6C9-06 11 123777236 123777236 G A OR8D4 Missense_Mutation p.G33E 0.09 tolerated(0.05) possibly_damaging(0.807) TCGA-GF-A6C9-06 11 123777278 123777278 C T OR8D4 Missense_Mutation p.S47L 0.11 tolerated(0.78) benign(0.002) TCGA-GF-A6C9-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.06 deleterious(0) benign(0.398) TCGA-GF-A6C9-06 11 123813961 123813961 C T OR6T1 Silent p.L195L 0.18 TCGA-GF-A6C9-06 11 123908974 123908974 G A OR10G7 Silent p.I245I 0.10 TCGA-GF-A6C9-06 11 123909109 123909109 C T OR10G7 Silent p.V200V 0.19 TCGA-GF-A6C9-06 11 123909511 123909511 G A OR10G7 Silent p.F66F 0.08 TCGA-GF-A6C9-06 11 124120661 124120661 A C OR8G1 Missense_Mutation p.K80T 0.10 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-GF-A6C9-06 11 124252693 124252693 G A OR8B2 Missense_Mutation p.P183S 0.11 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GF-A6C9-06 11 124266550 124266550 C T OR8B3 Missense_Mutation p.G233E 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GF-A6C9-06 11 124413431 124413431 C T OR8B12 Silent p.G40G 0.18 TCGA-GF-A6C9-06 11 124440560 124440560 C T OR8A1 Missense_Mutation p.P199L 0.20 deleterious(0) possibly_damaging(0.673) TCGA-GF-A6C9-06 11 124440855 124440855 A T OR8A1 Silent p.V297V 0.13 TCGA-GF-A6C9-06 11 124440872 124440872 C T OR8A1 Missense_Mutation p.P303L 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 124743254 124743254 G A ROBO3 Missense_Mutation p.E529K 0.26 deleterious(0.04) possibly_damaging(0.575) TCGA-GF-A6C9-06 11 12518125 12518125 G T PARVA Missense_Mutation p.S214I 0.14 tolerated(0.17) benign(0.126) TCGA-GF-A6C9-06 11 12518126 12518126 C T PARVA Silent p.S214S 0.14 TCGA-GF-A6C9-06 11 125787044 125787044 C T DDX25 Silent p.I312I 0.13 TCGA-GF-A6C9-06 11 128680810 128680810 G A FLI1 Missense_Mutation p.G429E 0.18 deleterious(0.02) benign(0.158) TCGA-GF-A6C9-06 11 128781738 128781738 C T KCNJ5 Silent p.I190I 0.16 TCGA-GF-A6C9-06 11 128851780 128851780 G A ARHGAP32 Silent p.S512S 0.09 TCGA-GF-A6C9-06 11 12923586 12923586 C T TEAD1 Missense_Mutation p.P267S 0.07 deleterious(0.03) probably_damaging(0.926) TCGA-GF-A6C9-06 11 129321307 129321307 C T BARX2 3'UTR 0.16 TCGA-GF-A6C9-06 11 130131285 130131285 G A ZBTB44 Missense_Mutation p.P162S 0.11 tolerated(0.16) probably_damaging(0.999) TCGA-GF-A6C9-06 11 130275491 130275491 C T ADAMTS8 Missense_Mutation p.D878N 0.12 deleterious(0.04) probably_damaging(0.94) TCGA-GF-A6C9-06 11 130284686 130284686 G A ADAMTS8 Missense_Mutation p.P436S 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-GF-A6C9-06 11 133712407 133712407 C T SPATA19 Missense_Mutation p.R137Q 0.19 tolerated(1) benign(0) TCGA-GF-A6C9-06 11 134023092 134023092 T C NCAPD3 Missense_Mutation p.K1444R 0.16 tolerated(0.14) benign(0.062) TCGA-GF-A6C9-06 11 134257463 134257464 - T B3GAT1 Frame_Shift_Ins p.P31Tfs*7 0.15 TCGA-GF-A6C9-06 11 14303158 14303158 G A RRAS2 Missense_Mutation p.R173W 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 14303159 14303159 G A RRAS2 Silent p.V172V 0.14 TCGA-GF-A6C9-06 11 14808169 14808169 G A PDE3B Missense_Mutation p.G406R 0.09 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 11 14840739 14840739 C T PDE3B Silent p.C597C 0.21 TCGA-GF-A6C9-06 11 1643034 1643034 G A KRTAP5-4 Missense_Mutation p.S97F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-GF-A6C9-06 11 16816047 16816047 C T PLEKHA7 Silent p.A911A 0.21 TCGA-GF-A6C9-06 11 17409615 17409615 G A KCNJ11 Silent p.I8I 0.15 TCGA-GF-A6C9-06 11 17414613 17414613 A C ABCC8 Silent p.L1557L 0.20 TCGA-GF-A6C9-06 11 17418547 17418547 C T ABCC8 Silent p.Q1345Q 0.13 TCGA-GF-A6C9-06 11 17542914 17542914 C T USH1C Missense_Mutation p.R355K 0.08 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-GF-A6C9-06 11 17743057 17743057 G A MYOD1 3'UTR 0.24 TCGA-GF-A6C9-06 11 18732255 18732255 C T IGSF22 Missense_Mutation p.R840Q 0.16 tolerated(0.35) benign(0.011) TCGA-GF-A6C9-06 11 18956018 18956018 G A MRGPRX1 Missense_Mutation p.S105F 0.13 tolerated(0.13) benign(0.013) TCGA-GF-A6C9-06 11 1904668 1904668 G A LSP1 Missense_Mutation p.E254K 0.10 deleterious_low_confidence(0.05) benign(0.135) TCGA-GF-A6C9-06 11 19077663 19077663 G A MRGPRX2 Missense_Mutation p.S96F 0.13 tolerated(0.71) benign(0.003) TCGA-GF-A6C9-06 11 19077901 19077901 C T MRGPRX2 Missense_Mutation p.G17R 0.14 tolerated(0.17) benign(0.049) TCGA-GF-A6C9-06 11 19735412 19735412 C T NAV2 Silent p.P57P 0.14 TCGA-GF-A6C9-06 11 20122583 20122583 C T NAV2 Silent p.I2153I 0.12 TCGA-GF-A6C9-06 11 20639370 20639370 C A SLC6A5 Silent p.L400L 0.11 TCGA-GF-A6C9-06 11 20691250 20691250 G A NELL1 5'UTR 0.18 TCGA-GF-A6C9-06 11 20805297 20805297 G A NELL1 Missense_Mutation p.E86K 0.16 deleterious(0) possibly_damaging(0.687) TCGA-GF-A6C9-06 11 26463519 26463519 G A ANO3 Missense_Mutation p.R34Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-GF-A6C9-06 11 26656577 26656577 G A ANO3 Missense_Mutation p.G668E 0.18 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 11 27720940 27720940 C T BDNF Intron 0.09 TCGA-GF-A6C9-06 11 2943677 2943677 C T SLC22A18 Silent p.S326S 0.17 TCGA-GF-A6C9-06 11 30930496 30930496 T C DCDC1 Silent p.Q1305Q 0.14 TCGA-GF-A6C9-06 11 30974051 30974051 G A DCDC1 Missense_Mutation p.P886S 0.15 deleterious(0.01) possibly_damaging(0.803) TCGA-GF-A6C9-06 11 31086609 31086609 C T DCDC1 Nonsense_Mutation p.W797* 0.11 TCGA-GF-A6C9-06 11 32421568 32421568 C T WT1 Missense_Mutation p.D342N 0.17 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-GF-A6C9-06 11 35453872 35453872 G A PAMR1 3'UTR 0.22 TCGA-GF-A6C9-06 11 36614165 36614165 C T RAG2 Silent p.K518K 0.21 TCGA-GF-A6C9-06 11 40136969 40136969 G A LRRC4C Missense_Mutation p.H292Y 0.06 tolerated(1) benign(0) TCGA-GF-A6C9-06 11 405859 405859 C T SIGIRR 3'UTR 0.14 TCGA-GF-A6C9-06 11 43923211 43923211 C T ALKBH3 Missense_Mutation p.P202L 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 44081484 44081484 C T ACCSL 3'UTR 0.09 TCGA-GF-A6C9-06 11 4470635 4470635 G A OR52K2 Silent p.L22L 0.10 TCGA-GF-A6C9-06 11 4470636 4470636 G A OR52K2 Missense_Mutation p.E23K 0.10 deleterious(0) possibly_damaging(0.483) TCGA-GF-A6C9-06 11 4567272 4567272 C T OR52M1 Silent p.L284L 0.07 TCGA-GF-A6C9-06 11 45827369 45827369 T C SLC35C1 Missense_Mutation p.L6P 0.20 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-GF-A6C9-06 11 46693861 46693861 C T ATG13 Silent p.A544A 0.06 TCGA-GF-A6C9-06 11 4674269 4674269 C T OR51E1 Silent p.F171F 0.06 TCGA-GF-A6C9-06 11 46900704 46900704 G A LRP4 Missense_Mutation p.H993Y 0.13 tolerated(0.57) benign(0.296) TCGA-GF-A6C9-06 11 46914641 46914641 C T LRP4 Nonsense_Mutation p.W527* 0.14 TCGA-GF-A6C9-06 11 46921426 46921426 C T LRP4 Missense_Mutation p.D140N 0.21 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C9-06 11 4703791 4703791 C T OR51E2 Missense_Mutation p.E51K 0.15 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 11 4703934 4703934 G A OR51E2 Missense_Mutation p.S3F 0.09 deleterious(0.01) benign(0.224) TCGA-GF-A6C9-06 11 47299717 47299717 T G MADD Missense_Mutation p.L366R 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 47299718 47299718 G T MADD Silent p.L366L 0.11 TCGA-GF-A6C9-06 11 47470502 47470502 C T RAPSN Silent p.Q5Q 0.14 TCGA-GF-A6C9-06 11 4825279 4825279 G A OR52R1 Missense_Mutation p.S111F 0.10 tolerated(0.11) benign(0.444) TCGA-GF-A6C9-06 11 4825580 4825580 G A OR52R1 Missense_Mutation p.H11Y 0.14 tolerated(0.06) benign(0.008) TCGA-GF-A6C9-06 11 48285459 48285459 C T OR4X1 Missense_Mutation p.S16F 0.14 tolerated(0.29) benign(0.179) TCGA-GF-A6C9-06 11 48328315 48328315 C T OR4S1 Missense_Mutation p.P181S 0.18 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 48328418 48328418 C T OR4S1 Missense_Mutation p.S215F 0.12 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.08 TCGA-GF-A6C9-06 11 48347079 48347079 C T OR4C3 Missense_Mutation p.P196L 0.08 deleterious(0) benign(0.126) TCGA-GF-A6C9-06 11 4843320 4843320 C T OR51F2 Silent p.I235I 0.16 TCGA-GF-A6C9-06 11 4869659 4869659 G A OR51S1 Silent p.I260I 0.15 TCGA-GF-A6C9-06 11 4869721 4869721 C T OR51S1 Missense_Mutation p.D240N 0.17 deleterious(0.02) benign(0.094) TCGA-GF-A6C9-06 11 488599 488599 C T PTDSS2 Missense_Mutation p.S269F 0.20 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 11 4928890 4928890 C T OR51A7 Silent p.C97C 0.14 TCGA-GF-A6C9-06 11 4945291 4945291 C T OR51G1 Silent p.E93E 0.12 TCGA-GF-A6C9-06 11 50003387 50003387 C T OR4C12 Silent p.V217V 0.11 TCGA-GF-A6C9-06 11 50003608 50003608 C T OR4C12 Missense_Mutation p.A144T 0.14 deleterious_low_confidence(0.03) benign(0.079) TCGA-GF-A6C9-06 11 5080741 5080741 G A OR52E2 Silent p.I39I 0.23 TCGA-GF-A6C9-06 11 51412108 51412108 C T OR4A5 Missense_Mutation p.M96I 0.09 deleterious_low_confidence(0.02) benign(0.027) TCGA-GF-A6C9-06 11 5172775 5172775 G A OR52A1 Silent p.I275I 0.09 TCGA-GF-A6C9-06 11 5220972 5220972 C T OR51V1 Missense_Mutation p.R320K 0.17 tolerated(0.43) benign(0.001) TCGA-GF-A6C9-06 11 5221693 5221693 G A OR51V1 Silent p.L80L 0.14 TCGA-GF-A6C9-06 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.10 deleterious(0.04) probably_damaging(0.987) TCGA-GF-A6C9-06 11 5289807 5289807 C T HBE1 Silent p.V112V 0.13 TCGA-GF-A6C9-06 11 5322760 5322760 C T OR51B4 Missense_Mutation p.M139I 0.18 tolerated(0.63) benign(0.004) TCGA-GF-A6C9-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.21 tolerated(0.65) benign(0.008) TCGA-GF-A6C9-06 11 5411015 5411015 G A OR51M1 Missense_Mutation p.M129I 0.15 deleterious(0.05) benign(0) TCGA-GF-A6C9-06 11 5510333 5510333 T A OR52D1 Missense_Mutation p.L133I 0.17 deleterious(0) benign(0.341) TCGA-GF-A6C9-06 11 5537115 5537115 G A UBQLNL Missense_Mutation p.S186F 0.07 deleterious(0.03) possibly_damaging(0.794) TCGA-GF-A6C9-06 11 55563774 55563774 C G OR5D14 Missense_Mutation p.T248S 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-GF-A6C9-06 11 55579026 55579026 C T OR5L1 Silent p.F28F 0.06 TCGA-GF-A6C9-06 11 55652970 55652970 C T TRIM51 Silent p.F22F 0.11 TCGA-GF-A6C9-06 11 55681990 55681990 C T OR5W2 Missense_Mutation p.M23I 0.09 tolerated(0.23) benign(0.002) TCGA-GF-A6C9-06 11 55872557 55872557 C T OR8H2 Silent p.F13F 0.19 TCGA-GF-A6C9-06 11 55872784 55872784 C T OR8H2 Missense_Mutation p.S89F 0.07 deleterious(0.01) benign(0.016) TCGA-GF-A6C9-06 11 55889999 55889999 C T OR8H3 Missense_Mutation p.R51C 0.10 tolerated(0.15) benign(0.004) TCGA-GF-A6C9-06 11 55890333 55890333 C T OR8H3 Missense_Mutation p.S162F 0.14 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 11 55890533 55890533 A - OR8H3 Frame_Shift_Del p.N229Ifs*27 0.13 TCGA-GF-A6C9-06 11 55904497 55904497 C T OR8J3 Missense_Mutation p.G233E 0.10 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 11 55944314 55944314 C T OR5J2 Missense_Mutation p.S74L 0.11 deleterious(0) benign(0.167) TCGA-GF-A6C9-06 11 56000181 56000181 G A OR5T2 Missense_Mutation p.R161C 0.16 deleterious(0.02) benign(0.081) TCGA-GF-A6C9-06 11 56020545 56020545 G A OR5T3 Missense_Mutation p.M290I 0.15 tolerated(0.21) benign(0.038) TCGA-GF-A6C9-06 11 56043953 56043953 C T OR5T1 Missense_Mutation p.S280L 0.19 tolerated(1) benign(0.002) TCGA-GF-A6C9-06 11 56058484 56058484 C T OR8H1 Missense_Mutation p.D19N 0.14 tolerated(0.12) benign(0.047) TCGA-GF-A6C9-06 11 56086638 56086638 C T OR8K3 Missense_Mutation p.P286S 0.11 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-GF-A6C9-06 11 56127844 56127844 G A OR8J1 Missense_Mutation p.G41E 0.10 deleterious(0) benign(0.242) TCGA-GF-A6C9-06 11 56143747 56143747 C T OR8U1 Silent p.V216V 0.11 TCGA-GF-A6C9-06 11 56143779 56143779 G A OR8U1 Missense_Mutation p.R227K 0.11 tolerated(0.15) benign(0.008) TCGA-GF-A6C9-06 11 56258072 56258072 G A OR5M8 Missense_Mutation p.L259F 0.16 deleterious(0.04) possibly_damaging(0.451) TCGA-GF-A6C9-06 11 56258407 56258407 G A OR5M8 Missense_Mutation p.P147L 0.21 deleterious(0.01) benign(0.35) TCGA-GF-A6C9-06 11 56345044 56345044 T C OR5M10 Missense_Mutation p.N52D 0.20 tolerated(1) benign(0.005) TCGA-GF-A6C9-06 11 56409243 56409243 G A OR5AP2 Silent p.L225L 0.16 TCGA-GF-A6C9-06 11 56431416 56431416 C T OR5AR1 Silent p.F85F 0.16 TCGA-GF-A6C9-06 11 56756619 56756619 C T OR5AK2 Silent p.I77I 0.14 TCGA-GF-A6C9-06 11 56756661 56756661 G A OR5AK2 Silent p.L91L 0.13 TCGA-GF-A6C9-06 11 5730316 5730316 C T TRIM22 Missense_Mutation p.S312L 0.08 tolerated(0.64) benign(0.001) TCGA-GF-A6C9-06 11 57505831 57505831 C T TMX2 Silent p.L124L 0.09 TCGA-GF-A6C9-06 11 57505847 57505847 C T TMX2 Missense_Mutation p.P129L 0.09 deleterious(0.01) possibly_damaging(0.638) TCGA-GF-A6C9-06 11 5776210 5776210 C T OR52N4 Silent p.I80I 0.12 TCGA-GF-A6C9-06 11 5776783 5776783 C T OR52N4 Silent p.I271I 0.18 TCGA-GF-A6C9-06 11 57799036 57799036 C T OR6Q1 Silent p.F204F 0.09 TCGA-GF-A6C9-06 11 57946980 57946980 G A OR9Q1 Missense_Mutation p.E22K 0.08 tolerated(0.18) benign(0.271) TCGA-GF-A6C9-06 11 57947151 57947151 C T OR9Q1 Missense_Mutation p.P79S 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-GF-A6C9-06 11 57983134 57983134 G A OR1S1 Silent p.R306R 0.18 TCGA-GF-A6C9-06 11 58035195 58035195 G A OR10W1 Silent p.L46L 0.11 TCGA-GF-A6C9-06 11 5809573 5809573 A G OR52N1 Silent p.V158V 0.12 TCGA-GF-A6C9-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 11 58170448 58170448 G A OR5B3 Silent p.G145G 0.12 TCGA-GF-A6C9-06 11 58477257 58477257 C T GLYAT Nonsense_Mutation p.W291* 0.09 TCGA-GF-A6C9-06 11 58980036 58980036 C T MPEG1 Silent p.L101L 0.15 TCGA-GF-A6C9-06 11 59211055 59211055 C T OR5A1 Silent p.I138I 0.17 TCGA-GF-A6C9-06 11 59271504 59271504 C T OR4D11 Silent p.G152G 0.08 TCGA-GF-A6C9-06 11 59596908 59596908 T G GIF 3'UTR 0.26 TCGA-GF-A6C9-06 11 59596917 59596917 C T GIF 3'UTR 0.21 TCGA-GF-A6C9-06 11 59596918 59596918 C T GIF 3'UTR 0.17 TCGA-GF-A6C9-06 11 6007660 6007660 C T OR52L1 Silent p.L167L 0.10 TCGA-GF-A6C9-06 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.09 tolerated(1) benign(0) TCGA-GF-A6C9-06 11 60183162 60183162 C T MS4A14 Missense_Mutation p.P274S 0.16 tolerated(0.55) benign(0.006) TCGA-GF-A6C9-06 11 6023380 6023380 G A OR56A4 Silent p.I333I 0.09 TCGA-GF-A6C9-06 11 6048073 6048073 G A OR56A1 Missense_Mutation p.H288Y 0.08 tolerated(0.77) possibly_damaging(0.686) TCGA-GF-A6C9-06 11 61318916 61318916 G A SYT7 Missense_Mutation p.S52F 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-GF-A6C9-06 11 61405046 61405046 G A RPLP0P2 RNA 0.15 TCGA-GF-A6C9-06 11 61624528 61624528 G A FADS2 Missense_Mutation p.E264K 0.15 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 11 61647530 61647530 G A FADS3 Nonsense_Mutation p.Q103* 0.18 TCGA-GF-A6C9-06 11 62521622 62521622 G A ZBTB3 5'UTR 0.24 TCGA-GF-A6C9-06 11 62768208 62768208 C A SLC22A8 Nonsense_Mutation p.G141* 0.26 TCGA-GF-A6C9-06 11 62782383 62782383 G A SLC22A8 Silent p.F16F 0.12 TCGA-GF-A6C9-06 11 6292576 6292576 G A CCKBR Missense_Mutation p.A383T 0.07 tolerated(0.18) possibly_damaging(0.842) TCGA-GF-A6C9-06 11 62931460 62931460 G A SLC22A25 Nonsense_Mutation p.R494* 0.07 TCGA-GF-A6C9-06 11 62984929 62984929 G A SLC22A25 Silent p.F229F 0.17 TCGA-GF-A6C9-06 11 63069907 63069907 C T SLC22A10 Nonsense_Mutation p.R393* 0.24 TCGA-GF-A6C9-06 11 63078618 63078618 C T SLC22A10 3'UTR 0.21 TCGA-GF-A6C9-06 11 63257786 63257786 T C HRASLS5 Silent p.A66A 0.20 TCGA-GF-A6C9-06 11 63885182 63885182 G A FLRT1 Silent p.T481T 0.32 TCGA-GF-A6C9-06 11 64024099 64024099 C T PLCB3 Missense_Mutation p.S292F 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 6415810 6415810 C T SMPD1 Silent p.S623S 0.18 TCGA-GF-A6C9-06 11 64434839 64434839 C T NRXN2 Missense_Mutation p.G561S 0.18 deleterious(0.02) benign(0.034) TCGA-GF-A6C9-06 11 64519507 64519507 C T PYGM Missense_Mutation p.E553K 0.11 tolerated(0.38) benign(0.071) TCGA-GF-A6C9-06 11 6452884 6452884 G A HPX Silent p.L372L 0.17 TCGA-GF-A6C9-06 11 64665324 64665324 G A ATG2A Missense_Mutation p.P1661S 0.10 deleterious(0.01) possibly_damaging(0.894) TCGA-GF-A6C9-06 11 65315551 65315551 G A LTBP3 Intron 0.09 TCGA-GF-A6C9-06 11 65487125 65487125 T C RNASEH2C 3'UTR 0.23 TCGA-GF-A6C9-06 11 65793504 65793504 T C CATSPER1 Missense_Mutation p.H116R 0.07 tolerated(0.17) benign(0.002) TCGA-GF-A6C9-06 11 65810979 65810979 G A GAL3ST3 Missense_Mutation p.P99S 0.10 tolerated(0.58) benign(0.136) TCGA-GF-A6C9-06 11 65978617 65978617 C T PACS1 Missense_Mutation p.L183F 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-GF-A6C9-06 11 66039832 66039832 C T RAB1B Intron 0.10 TCGA-GF-A6C9-06 11 66084440 66084440 G A CD248 Missense_Mutation p.P20L 0.21 tolerated_low_confidence(0.05) benign(0.002) TCGA-GF-A6C9-06 11 66100136 66100136 G A RIN1 Silent p.L655L 0.17 TCGA-GF-A6C9-06 11 66191635 66191635 C T NPAS4 Missense_Mutation p.P425L 0.09 deleterious(0) possibly_damaging(0.617) TCGA-GF-A6C9-06 11 66192525 66192525 C T NPAS4 Missense_Mutation p.P722S 0.17 tolerated(0.34) benign(0.069) TCGA-GF-A6C9-06 11 66457315 66457315 C T SPTBN2 Silent p.G1970G 0.07 TCGA-GF-A6C9-06 11 67220152 67220152 C T GPR152 Missense_Mutation p.R15K 0.27 tolerated(0.38) benign(0.034) TCGA-GF-A6C9-06 11 6815988 6815988 G A OR6A2 Missense_Mutation p.P318S 0.15 tolerated(0.24) benign(0) TCGA-GF-A6C9-06 11 6816286 6816286 G A OR6A2 Silent p.V218V 0.17 TCGA-GF-A6C9-06 11 68207275 68207275 C T LRP5 Missense_Mutation p.S1460F 0.16 deleterious(0.02) probably_damaging(0.968) TCGA-GF-A6C9-06 11 68312408 68312408 C T PPP6R3 Silent p.L110L 0.09 TCGA-GF-A6C9-06 11 68312409 68312409 C T PPP6R3 Silent p.L111L 0.09 TCGA-GF-A6C9-06 11 68478369 68478369 G A MTL5 Missense_Mutation p.S436L 0.23 tolerated(0.05) benign(0.004) TCGA-GF-A6C9-06 11 68478450 68478450 C T MTL5 Missense_Mutation p.R409Q 0.15 tolerated(0.14) benign(0.018) TCGA-GF-A6C9-06 11 68704306 68704306 C T IGHMBP2 Silent p.A786A 0.15 TCGA-GF-A6C9-06 11 69456258 69456258 C T CCND1 Silent p.I59I 0.10 TCGA-GF-A6C9-06 11 6964358 6964358 A C ZNF215 Missense_Mutation p.E176D 0.14 deleterious(0.01) probably_damaging(0.926) TCGA-GF-A6C9-06 11 70332367 70332367 G A SHANK2 Missense_Mutation p.S1345L 0.10 tolerated(0.12) benign(0.32) TCGA-GF-A6C9-06 11 7065069 7065069 G A NLRP14 Silent p.K604K 0.12 TCGA-GF-A6C9-06 11 71946982 71946982 C T INPPL1 Missense_Mutation p.P944L 0.13 tolerated(0.14) benign(0.001) TCGA-GF-A6C9-06 11 72945978 72945978 C T P2RY2 Silent p.F258F 0.11 TCGA-GF-A6C9-06 11 73008283 73008283 G A P2RY6 Missense_Mutation p.M240I 0.09 tolerated(0.11) probably_damaging(0.998) TCGA-GF-A6C9-06 11 74013578 74013578 C T P4HA3 Missense_Mutation p.G135R 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 74168293 74168293 C T KCNE3 3'UTR 0.35 TCGA-GF-A6C9-06 11 74716851 74716851 C T NEU3 Silent p.L234L 0.15 TCGA-GF-A6C9-06 11 76261002 76261002 C T C11orf30 Missense_Mutation p.P1261S 0.08 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-GF-A6C9-06 11 76506982 76506982 C T TSKU Missense_Mutation p.R108C 0.19 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 11 76701612 76701612 C T ACER3 Silent p.F144F 0.12 TCGA-GF-A6C9-06 11 76826570 76826570 T C CAPN5 Silent p.L277L 0.17 TCGA-GF-A6C9-06 11 76867787 76867787 G A MYO7A Nonsense_Mutation p.W184* 0.08 TCGA-GF-A6C9-06 11 77377951 77377951 G A RSF1 3'UTR 0.11 TCGA-GF-A6C9-06 11 77728098 77728098 G A KCTD14 Silent p.I103I 0.16 TCGA-GF-A6C9-06 11 77812121 77812121 G A ALG8 Silent p.I490I 0.12 TCGA-GF-A6C9-06 11 7818040 7818040 G A OR5P2 Silent p.L150L 0.18 TCGA-GF-A6C9-06 11 7950179 7950179 C T OR10A6 Missense_Mutation p.E11K 0.16 tolerated(0.09) benign(0.078) TCGA-GF-A6C9-06 11 7960426 7960426 G A OR10A3 Silent p.I214I 0.09 TCGA-GF-A6C9-06 11 8008854 8008854 C T EIF3F 5'UTR 0.07 TCGA-GF-A6C9-06 11 8161479 8161479 C T RIC3 Intron 0.16 TCGA-GF-A6C9-06 11 8190586 8190586 G A RIC3 5'Flank 0.27 TCGA-GF-A6C9-06 11 821704 821704 C T PNPLA2 Silent p.F88F 0.29 TCGA-GF-A6C9-06 11 83674049 83674049 C T DLG2 Missense_Mutation p.E407K 0.15 tolerated(0.1) benign(0.39) TCGA-GF-A6C9-06 11 84028139 84028139 C T DLG2 Intron 0.17 TCGA-GF-A6C9-06 11 8413987 8413987 C T STK33 3'UTR 0.11 TCGA-GF-A6C9-06 11 84634157 84634157 G A DLG2 Intron 0.13 TCGA-GF-A6C9-06 11 85468798 85468799 AC - SYTL2 5'UTR 0.15 TCGA-GF-A6C9-06 11 8704334 8704334 C T RPL27A 5'UTR 0.07 TCGA-GF-A6C9-06 11 88583119 88583119 G A GRM5 Missense_Mutation p.A289V 0.13 deleterious(0) probably_damaging(0.95) TCGA-GF-A6C9-06 11 89133219 89133219 G A NOX4 Missense_Mutation p.S347F 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 89421777 89421777 G A FOLH1B RNA 0.12 TCGA-GF-A6C9-06 11 92086083 92086083 G T FAT3 Missense_Mutation p.V269F 0.10 probably_damaging(0.935) TCGA-GF-A6C9-06 11 9228267 9228267 G A DENND5A Missense_Mutation p.P82S 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 11 92616312 92616312 C T FAT3 Silent p.V4230V 0.17 TCGA-GF-A6C9-06 11 92616313 92616313 C T FAT3 Missense_Mutation p.P4231S 0.16 possibly_damaging(0.829) TCGA-GF-A6C9-06 11 92623781 92623781 C T FAT3 Silent p.S4424S 0.11 TCGA-GF-A6C9-06 11 93088615 93088615 G A CCDC67 Nonsense_Mutation p.W36* 0.14 TCGA-GF-A6C9-06 11 96104197 96104197 G A CCDC82 Missense_Mutation p.R397C 0.17 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 11 9853781 9853781 G A SBF2 Silent p.S1214S 0.16 TCGA-GF-A6C9-06 12 100934521 100934521 C T NR1H4 Missense_Mutation p.R345C 0.12 deleterious(0.04) probably_damaging(1) TCGA-GF-A6C9-06 12 101017809 101017809 T C GAS2L3 Missense_Mutation p.L409S 0.14 tolerated(0.45) benign(0.014) TCGA-GF-A6C9-06 12 101510497 101510497 C T ANO4 Nonsense_Mutation p.R796* 0.09 TCGA-GF-A6C9-06 12 101740231 101740231 C T UTP20 Silent p.I1583I 0.10 TCGA-GF-A6C9-06 12 103237429 103237429 T A PAH Missense_Mutation p.K398N 0.12 deleterious(0) probably_damaging(0.984) TCGA-GF-A6C9-06 12 104048347 104048347 G A STAB2 Silent p.K474K 0.13 TCGA-GF-A6C9-06 12 104084292 104084292 C T STAB2 Silent p.F1091F 0.12 TCGA-GF-A6C9-06 12 10462028 10462028 G A KLRD1 Missense_Mutation p.G17R 0.10 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 12 106461462 106461462 C T NUAK1 Silent p.L368L 0.11 TCGA-GF-A6C9-06 12 108589950 108589950 C T WSCD2 Missense_Mutation p.A114V 0.10 tolerated(0.18) benign(0.424) TCGA-GF-A6C9-06 12 108985924 108985924 G A TMEM119 Missense_Mutation p.P79L 0.10 tolerated(0.06) benign(0.368) TCGA-GF-A6C9-06 12 110788088 110788088 C T ATP2A2 3'Flank 0.18 TCGA-GF-A6C9-06 12 110957715 110957715 G A RAD9B Missense_Mutation p.R295Q 0.25 tolerated(1) benign(0.003) TCGA-GF-A6C9-06 12 111099079 111099079 C T HVCN1 Missense_Mutation p.E66K 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.538) TCGA-GF-A6C9-06 12 111311748 111311748 G A CCDC63 Missense_Mutation p.E158K 0.12 deleterious(0.03) probably_damaging(0.993) TCGA-GF-A6C9-06 12 111342546 111342546 C T CCDC63 Silent p.V499V 0.12 TCGA-GF-A6C9-06 12 112229944 112229944 A G ALDH2 Missense_Mutation p.N292S 0.12 tolerated(0.46) benign(0.12) TCGA-GF-A6C9-06 12 113533172 113533172 G A DTX1 Missense_Mutation p.G531R 0.10 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 12 113554885 113554885 C T RASAL1 Missense_Mutation p.D242N 0.08 tolerated(0.06) benign(0.238) TCGA-GF-A6C9-06 12 11461493 11461493 C T PRB4 Missense_Mutation p.E142K 0.16 deleterious_low_confidence(0.03) unknown(0) TCGA-GF-A6C9-06 12 114823345 114823345 G A TBX5 Missense_Mutation p.P231S 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 12 11546159 11546159 C T PRB2 Missense_Mutation p.G285R 0.07 tolerated(0.06) unknown(0) TCGA-GF-A6C9-06 12 117628210 117628210 C T FBXO21 Missense_Mutation p.E18K 0.30 tolerated_low_confidence(0.16) benign(0.001) TCGA-GF-A6C9-06 12 117701773 117701773 G A NOS1 Missense_Mutation p.P715S 0.21 deleterious(0.01) probably_damaging(0.92) TCGA-GF-A6C9-06 12 117962814 117962814 C T KSR2 Missense_Mutation p.E688K 0.09 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 12 121471365 121471365 C T OASL Missense_Mutation p.R127K 0.10 tolerated(0.93) benign(0.05) TCGA-GF-A6C9-06 12 121471527 121471527 C T OASL Missense_Mutation p.G73D 0.09 deleterious(0) probably_damaging(0.972) TCGA-GF-A6C9-06 12 121687675 121687675 G A CAMKK2 Missense_Mutation p.P413L 0.14 deleterious(0.03) benign(0.098) TCGA-GF-A6C9-06 12 122277865 122277865 C T HPD Silent p.L348L 0.11 TCGA-GF-A6C9-06 12 122657205 122657205 G A IL31 Silent p.I83I 0.19 TCGA-GF-A6C9-06 12 125509700 125509700 C T BRI3BP Silent p.I160I 0.14 TCGA-GF-A6C9-06 12 126068435 126068435 G A TMEM132B Silent p.K439K 0.09 TCGA-GF-A6C9-06 12 129563268 129563268 G A TMEM132D Silent p.I642I 0.13 TCGA-GF-A6C9-06 12 129822251 129822251 G A TMEM132D Silent p.I409I 0.07 TCGA-GF-A6C9-06 12 130648153 130648153 G A FZD10 Silent p.E222E 0.11 TCGA-GF-A6C9-06 12 130830989 130830989 C T PIWIL1 Nonsense_Mutation p.Q131* 0.11 TCGA-GF-A6C9-06 12 130840207 130840207 A T PIWIL1 Nonsense_Mutation p.K467* 0.10 TCGA-GF-A6C9-06 12 130919343 130919343 G A RIMBP2 Missense_Mutation p.P713L 0.11 deleterious(0.02) benign(0.067) TCGA-GF-A6C9-06 12 131487334 131487334 C T GPR133 Intron 0.16 TCGA-GF-A6C9-06 12 132516578 132516578 C T EP400 Silent p.N1945N 0.14 TCGA-GF-A6C9-06 12 132554083 132554083 T C EP400 Missense_Mutation p.V2973A 0.20 probably_damaging(0.981) TCGA-GF-A6C9-06 12 132681737 132681737 G A GALNT9 Missense_Mutation p.A210V 0.19 tolerated(0.23) benign(0.012) TCGA-GF-A6C9-06 12 133313584 133313584 G A ANKLE2 Silent p.S496S 0.09 TCGA-GF-A6C9-06 12 133378447 133378447 G A GOLGA3 Missense_Mutation p.S569L 0.24 tolerated(0.19) benign(0.22) TCGA-GF-A6C9-06 12 13715621 13715621 G A GRIN2B 3'UTR 0.17 TCGA-GF-A6C9-06 12 13716623 13716623 C G GRIN2B Silent p.T1183T 0.21 TCGA-GF-A6C9-06 12 13717194 13717194 C T GRIN2B Missense_Mutation p.S993N 0.09 deleterious(0) probably_damaging(0.982) TCGA-GF-A6C9-06 12 13717485 13717485 G A GRIN2B Missense_Mutation p.S896F 0.21 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 12 14706183 14706183 C T PLBD1 Silent p.L93L 0.16 TCGA-GF-A6C9-06 12 14836052 14836052 C T GUCY2C Missense_Mutation p.D179N 0.19 tolerated(0.89) benign(0.001) TCGA-GF-A6C9-06 12 15661699 15661699 C T PTPRO Nonsense_Mutation p.Q488* 0.13 TCGA-GF-A6C9-06 12 15718545 15718545 G A PTPRO Silent p.K910K 0.15 TCGA-GF-A6C9-06 12 18237529 18237529 A C RERGL Missense_Mutation p.I86S 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 12 18435524 18435524 G A PIK3C2G Missense_Mutation p.G170E 0.18 tolerated_low_confidence(0.1) benign(0.025) TCGA-GF-A6C9-06 12 18852748 18852748 C T PLCZ1 Missense_Mutation p.R385Q 0.12 tolerated(0.08) possibly_damaging(0.49) TCGA-GF-A6C9-06 12 18854438 18854438 C T PLCZ1 Silent p.K338K 0.14 TCGA-GF-A6C9-06 12 18891609 18891609 G A CAPZA3 Missense_Mutation p.G136E 0.09 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 12 2019092 2019092 C T CACNA2D4 Missense_Mutation p.E156K 0.14 tolerated(0.11) benign(0.032) TCGA-GF-A6C9-06 12 2024075 2024075 C T CACNA2D4 Missense_Mutation p.G85D 0.15 deleterious(0) possibly_damaging(0.891) TCGA-GF-A6C9-06 12 2024076 2024076 C T CACNA2D4 Missense_Mutation p.G85S 0.15 tolerated(0.14) benign(0.132) TCGA-GF-A6C9-06 12 2074804 2074804 G A DCP1B Missense_Mutation p.P148S 0.10 deleterious(0) possibly_damaging(0.78) TCGA-GF-A6C9-06 12 21028385 21028385 G A SLCO1B3 Missense_Mutation p.G315E 0.22 tolerated(1) benign(0.006) TCGA-GF-A6C9-06 12 21032466 21032466 C T SLCO1B3 Missense_Mutation p.S411L 0.16 tolerated(0.65) benign(0.013) TCGA-GF-A6C9-06 12 21207553 21207553 T C SLCO1B7 Silent p.Y508Y 0.19 TCGA-GF-A6C9-06 12 21918682 21918682 C T KCNJ8 Missense_Mutation p.G417E 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-GF-A6C9-06 12 24736789 24736789 G A LINC00477 RNA 0.10 TCGA-GF-A6C9-06 12 2595291 2595291 C T CACNA1C Missense_Mutation p.S260F 0.19 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 12 28116694 28116694 A C PTHLH Silent p.A37A 0.10 TCGA-GF-A6C9-06 12 308073 308073 G A SLC6A12 Missense_Mutation p.P246S 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 12 33592448 33592448 G A SYT10 Missense_Mutation p.H4Y 0.07 deleterious_low_confidence(0.04) benign(0.038) TCGA-GF-A6C9-06 12 3388214 3388214 C T TSPAN9 Silent p.F104F 0.14 TCGA-GF-A6C9-06 12 346429 346429 C T SLC6A13 Silent p.G197G 0.12 TCGA-GF-A6C9-06 12 39696922 39696922 C T KIF21A Missense_Mutation p.E1526K 0.18 deleterious(0.02) benign(0.313) TCGA-GF-A6C9-06 12 39734772 39734772 T C KIF21A Silent p.L682L 0.27 TCGA-GF-A6C9-06 12 40013305 40013305 G A ABCD2 Missense_Mutation p.P38L 0.10 deleterious(0.04) probably_damaging(1) TCGA-GF-A6C9-06 12 41323742 41323742 C T CNTN1 Missense_Mutation p.S214F 0.08 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 12 41949548 41949548 G A PDZRN4 Missense_Mutation p.D451N 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 12 43826118 43826118 C T ADAMTS20 Missense_Mutation p.E1029K 0.10 deleterious(0.01) benign(0.093) TCGA-GF-A6C9-06 12 43826148 43826148 C T ADAMTS20 Missense_Mutation p.E1019K 0.18 tolerated(0.07) probably_damaging(0.911) TCGA-GF-A6C9-06 12 43862495 43862495 T C ADAMTS20 Silent p.L377L 0.15 TCGA-GF-A6C9-06 12 45108503 45108503 C T NELL2 Missense_Mutation p.R389Q 0.08 tolerated(0.46) benign(0.003) TCGA-GF-A6C9-06 12 45410273 45410273 G A DBX2 Silent p.F272F 0.10 TCGA-GF-A6C9-06 12 45567852 45567852 C T PLEKHA8P1 RNA 0.12 TCGA-GF-A6C9-06 12 46591720 46591720 C T SLC38A1 Missense_Mutation p.D416N 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-GF-A6C9-06 12 47186848 47186848 G A SLC38A4 Missense_Mutation p.P3S 0.08 tolerated(0.13) benign(0.035) TCGA-GF-A6C9-06 12 4724929 4724929 C T AKAP3 Silent p.L846L 0.08 TCGA-GF-A6C9-06 12 47629266 47629266 G A PCED1B Silent p.L140L 0.14 TCGA-GF-A6C9-06 12 47629267 47629267 G A PCED1B Missense_Mutation p.E141K 0.14 tolerated(0.25) benign(0.003) TCGA-GF-A6C9-06 12 47629998 47629998 C T PCED1B Silent p.F384F 0.23 TCGA-GF-A6C9-06 12 48379322 48379322 G A COL2A1 Missense_Mutation p.P577S 0.07 possibly_damaging(0.698) TCGA-GF-A6C9-06 12 48393798 48393798 C T COL2A1 Missense_Mutation p.D66N 0.24 unknown(0) TCGA-GF-A6C9-06 12 48736792 48736792 G A ZNF641 Silent p.P427P 0.11 TCGA-GF-A6C9-06 12 48919457 48919457 C T OR8S1 Missense_Mutation p.L15F 0.09 deleterious(0.03) benign(0.062) TCGA-GF-A6C9-06 12 48919969 48919969 C T OR8S1 Silent p.L185L 0.13 TCGA-GF-A6C9-06 12 4920056 4920056 C T KCNA6 Silent p.S283S 0.12 TCGA-GF-A6C9-06 12 49579407 49579407 G A TUBA1A Silent p.L248L 0.12 TCGA-GF-A6C9-06 12 49994286 49994286 T C FAM186B Missense_Mutation p.I379M 0.15 tolerated(0.07) benign(0) TCGA-GF-A6C9-06 12 50031254 50031254 C T PRPF40B Missense_Mutation p.T521I 0.18 tolerated(0.38) benign(0.039) TCGA-GF-A6C9-06 12 50822772 50822772 C T LARP4 Missense_Mutation p.S74L 0.24 tolerated(0.21) benign(0.001) TCGA-GF-A6C9-06 12 5154069 5154069 C T KCNA5 Silent p.I252I 0.07 TCGA-GF-A6C9-06 12 53001803 53001803 C T KRT73 3'UTR 0.17 TCGA-GF-A6C9-06 12 53009963 53009963 C T KRT73 Missense_Mutation p.D217N 0.14 deleterious(0) probably_damaging(0.976) TCGA-GF-A6C9-06 12 53208000 53208000 C T KRT4 5'UTR 0.13 TCGA-GF-A6C9-06 12 53208107 53208107 G A KRT4 5'UTR 0.19 TCGA-GF-A6C9-06 12 53233127 53233127 C T KRT78 Missense_Mutation p.G445R 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-GF-A6C9-06 12 53242526 53242526 C T KRT78 Silent p.G63G 0.12 TCGA-GF-A6C9-06 12 53673625 53673625 C T ESPL1 Missense_Mutation p.T825I 0.11 tolerated(0.42) benign(0.067) TCGA-GF-A6C9-06 12 54350166 54350166 C T HOXC12 Missense_Mutation p.S222L 0.12 deleterious(0) possibly_damaging(0.713) TCGA-GF-A6C9-06 12 54686833 54686833 G A NFE2 Silent p.S149S 0.13 TCGA-GF-A6C9-06 12 54792448 54792448 G A ITGA5 Missense_Mutation p.A959V 0.22 tolerated(0.49) benign(0.16) TCGA-GF-A6C9-06 12 54794676 54794676 C A ITGA5 Missense_Mutation p.G866V 0.22 tolerated(0.11) possibly_damaging(0.507) TCGA-GF-A6C9-06 12 54914572 54914572 C T NCKAP1L Missense_Mutation p.H574Y 0.17 deleterious(0.03) benign(0.208) TCGA-GF-A6C9-06 12 54971287 54971287 G A PPP1R1A 3'Flank 0.08 TCGA-GF-A6C9-06 12 55523813 55523813 C T OR9K2 Silent p.F87F 0.08 TCGA-GF-A6C9-06 12 55688869 55688869 C T OR6C6 Missense_Mutation p.D50N 0.09 deleterious_low_confidence(0.05) benign(0.078) TCGA-GF-A6C9-06 12 55714602 55714602 C A OR6C1 Silent p.T73T 0.13 TCGA-GF-A6C9-06 12 55725533 55725533 G A OR6C3 Missense_Mutation p.D17N 0.12 tolerated_low_confidence(0.24) benign(0.048) TCGA-GF-A6C9-06 12 55725553 55725553 G A OR6C3 Silent p.V23V 0.12 TCGA-GF-A6C9-06 12 55846191 55846191 C T OR6C2 Missense_Mutation p.S65F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-GF-A6C9-06 12 55863245 55863245 G A OR6C70 Silent p.F226F 0.11 TCGA-GF-A6C9-06 12 55863686 55863686 G A OR6C70 Silent p.F79F 0.12 TCGA-GF-A6C9-06 12 5603668 5603668 G A NTF3 Silent p.Q109Q 0.08 TCGA-GF-A6C9-06 12 56081814 56081814 G A ITGA7 Missense_Mutation p.L1046F 0.10 tolerated(0.08) benign(0.101) TCGA-GF-A6C9-06 12 56347173 56347173 C T DGKA Silent p.P701P 0.18 TCGA-GF-A6C9-06 12 56487294 56487294 G A ERBB3 Silent p.E480E 0.11 TCGA-GF-A6C9-06 12 56718094 56718094 G A PAN2 Nonsense_Mutation p.R638* 0.19 TCGA-GF-A6C9-06 12 56722320 56722320 G A PAN2 Missense_Mutation p.L130F 0.12 deleterious(0.03) possibly_damaging(0.655) TCGA-GF-A6C9-06 12 56811486 56811486 G A TIMELESS 3'UTR 0.17 TCGA-GF-A6C9-06 12 57114891 57114891 G A NACA Silent p.A141A 0.14 TCGA-GF-A6C9-06 12 57323229 57323229 C T SDR9C7 Nonsense_Mutation p.W223* 0.17 TCGA-GF-A6C9-06 12 57389030 57389030 G A GPR182 Missense_Mutation p.E13K 0.16 tolerated(0.23) benign(0.003) TCGA-GF-A6C9-06 12 5744379 5744379 G A ANO2 Silent p.L585L 0.26 TCGA-GF-A6C9-06 12 57881810 57881810 G A MARS 5'UTR 0.12 TCGA-GF-A6C9-06 12 57966424 57966424 G A KIF5A Missense_Mutation p.R544Q 0.09 deleterious(0.04) probably_damaging(0.926) TCGA-GF-A6C9-06 12 58204901 58204901 C T AVIL Silent p.Q116Q 0.07 TCGA-GF-A6C9-06 12 59283854 59283854 G A LRIG3 Missense_Mutation p.L195F 0.10 tolerated(0.2) possibly_damaging(0.756) TCGA-GF-A6C9-06 12 6128270 6128270 G A VWF Silent p.F1438F 0.15 TCGA-GF-A6C9-06 12 62954393 62954393 C T MON2 Missense_Mutation p.P1178S 0.10 tolerated_low_confidence(0.06) benign(0.113) TCGA-GF-A6C9-06 12 6660113 6660113 G A IFFO1 Silent p.L276L 0.11 TCGA-GF-A6C9-06 12 66707833 66707833 C T HELB Missense_Mutation p.S583L 0.13 deleterious(0.03) benign(0.313) TCGA-GF-A6C9-06 12 68696535 68696535 G A MDM1 Missense_Mutation p.L613F 0.07 tolerated(0.7) benign(0.007) TCGA-GF-A6C9-06 12 69114916 69114916 G A NUP107 Missense_Mutation p.E424K 0.07 deleterious(0) possibly_damaging(0.705) TCGA-GF-A6C9-06 12 69260754 69260754 G A CPM Missense_Mutation p.P288S 0.17 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 12 69968151 69968151 C T FRS2 Missense_Mutation p.P315S 0.10 tolerated(0.1) benign(0.066) TCGA-GF-A6C9-06 12 71056364 71056364 C T PTPRR Missense_Mutation p.E507K 0.14 deleterious(0.01) benign(0.227) TCGA-GF-A6C9-06 12 71158482 71158482 C T PTPRR Missense_Mutation p.G145E 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 12 7177603 7177603 G A C1S Missense_Mutation p.R572Q 0.09 tolerated(0.36) benign(0.013) TCGA-GF-A6C9-06 12 7188432 7188432 C T C1R Missense_Mutation p.E456K 0.22 tolerated(0.75) benign(0.001) TCGA-GF-A6C9-06 12 71928964 71928964 C T LGR5 Silent p.S142S 0.09 TCGA-GF-A6C9-06 12 71974164 71974164 G A LGR5 Missense_Mutation p.D505N 0.09 tolerated(0.07) benign(0.097) TCGA-GF-A6C9-06 12 72057147 72057147 G A ZFC3H1 Nonsense_Mutation p.Q82* 0.12 TCGA-GF-A6C9-06 12 72291720 72291720 C T TBC1D15 Silent p.I411I 0.23 TCGA-GF-A6C9-06 12 73046898 73046898 G A TRHDE Nonsense_Mutation p.W937* 0.18 TCGA-GF-A6C9-06 12 75434918 75434918 C T KCNC2 3'UTR 0.10 TCGA-GF-A6C9-06 12 75444565 75444565 C T KCNC2 Missense_Mutation p.G407E 0.08 tolerated(0.11) probably_damaging(1) TCGA-GF-A6C9-06 12 7551075 7551075 C T CD163L1 Nonsense_Mutation p.W505* 0.10 TCGA-GF-A6C9-06 12 77417884 77417884 G A E2F7 Missense_Mutation p.P883S 0.09 tolerated(0.09) possibly_damaging(0.851) TCGA-GF-A6C9-06 12 78513132 78513132 C T NAV3 Silent p.P1052P 0.20 TCGA-GF-A6C9-06 12 78513407 78513407 C T NAV3 Missense_Mutation p.S1144F 0.11 deleterious(0) probably_damaging(0.94) TCGA-GF-A6C9-06 12 79611396 79611396 G A SYT1 Missense_Mutation p.G33R 0.21 tolerated(0.05) benign(0.029) TCGA-GF-A6C9-06 12 79689945 79689945 A C SYT1 Missense_Mutation p.K191Q 0.16 deleterious(0) probably_damaging(0.944) TCGA-GF-A6C9-06 12 7972128 7972128 C T SLC2A14 Missense_Mutation p.G364R 0.09 deleterious(0.04) possibly_damaging(0.659) TCGA-GF-A6C9-06 12 7985359 7985359 G A SLC2A14 Nonsense_Mutation p.Q47* 0.17 TCGA-GF-A6C9-06 12 80623100 80623100 T A OTOGL Missense_Mutation p.F176I 0.11 tolerated(0.07) possibly_damaging(0.859) TCGA-GF-A6C9-06 12 81110921 81110921 G A MYF5 Missense_Mutation p.E27K 0.11 tolerated(0.37) benign(0.226) TCGA-GF-A6C9-06 12 81112868 81112868 C T MYF5 3'UTR 0.31 TCGA-GF-A6C9-06 12 81205363 81205363 C T LIN7A Missense_Mutation p.E195K 0.16 deleterious(0.02) possibly_damaging(0.636) TCGA-GF-A6C9-06 12 81205386 81205386 C T LIN7A Missense_Mutation p.R187Q 0.09 tolerated(0.45) possibly_damaging(0.857) TCGA-GF-A6C9-06 12 81545686 81545686 G A ACSS3 Missense_Mutation p.G329R 0.09 deleterious(0) probably_damaging(0.913) TCGA-GF-A6C9-06 12 81657112 81657112 C T PPFIA2 Missense_Mutation p.E1205K 0.10 deleterious_low_confidence(0) benign(0.381) TCGA-GF-A6C9-06 12 8670788 8670788 G A CLEC4D Silent p.K50K 0.14 TCGA-GF-A6C9-06 12 8990110 8990110 G A A2ML1 Missense_Mutation p.R268Q 0.13 tolerated(0.5) benign(0.004) TCGA-GF-A6C9-06 12 91502729 91502729 G A LUM Silent p.L10L 0.09 TCGA-GF-A6C9-06 12 9265989 9265989 C T A2M Silent p.A79A 0.11 TCGA-GF-A6C9-06 12 93804643 93804643 C T UBE2N Nonsense_Mutation p.W95* 0.08 TCGA-GF-A6C9-06 12 97051774 97051774 G A C12orf55 Missense_Mutation p.D1739N 0.11 deleterious(0) probably_damaging(0.974) TCGA-GF-A6C9-06 13 101714379 101714379 C T NALCN Missense_Mutation p.E1566K 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-GF-A6C9-06 13 103346790 103346790 G A METTL21C Missense_Mutation p.S20F 0.15 tolerated_low_confidence(0.08) benign(0) TCGA-GF-A6C9-06 13 107145430 107145430 C T EFNB2 Silent p.E320E 0.15 TCGA-GF-A6C9-06 13 109459111 109459111 C T MYO16 Nonsense_Mutation p.Q254* 0.10 TCGA-GF-A6C9-06 13 110838746 110838746 G A COL4A1 Missense_Mutation p.S628F 0.07 benign(0.002) TCGA-GF-A6C9-06 13 111303384 111303384 A G CARS2 Missense_Mutation p.S351P 0.08 deleterious(0) probably_damaging(0.953) TCGA-GF-A6C9-06 13 113485720 113485720 C T ATP11A Missense_Mutation p.T418I 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 13 114009649 114009649 G A GRTP1 Missense_Mutation p.A110V 0.19 tolerated(0.18) benign(0.158) TCGA-GF-A6C9-06 13 19751184 19751184 C T TUBA3C Missense_Mutation p.M313I 0.09 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-GF-A6C9-06 13 24864927 24864927 C T SPATA13 Silent p.I995I 0.14 TCGA-GF-A6C9-06 13 25262521 25262521 C T ATP12A Missense_Mutation p.P98L 0.10 deleterious(0) possibly_damaging(0.854) TCGA-GF-A6C9-06 13 27216518 27216518 C T WASF3 Silent p.I37I 0.11 TCGA-GF-A6C9-06 13 28537193 28537193 G A CDX2 3'UTR 0.38 TCGA-GF-A6C9-06 13 29598955 29598955 C T MTUS2 Silent p.I50I 0.09 TCGA-GF-A6C9-06 13 29600809 29600809 G A MTUS2 Silent p.V668V 0.24 TCGA-GF-A6C9-06 13 29600810 29600810 G A MTUS2 Missense_Mutation p.D669N 0.30 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C9-06 13 32906615 32906615 C T BRCA2 Missense_Mutation p.H334Y 0.13 tolerated(1) benign(0.005) TCGA-GF-A6C9-06 13 33700218 33700218 C T STARD13 Silent p.Q694Q 0.11 TCGA-GF-A6C9-06 13 35644078 35644078 C T NBEA Missense_Mutation p.H425Y 0.22 tolerated(0.91) benign(0.005) TCGA-GF-A6C9-06 13 35644863 35644863 A T NBEA Missense_Mutation p.K482I 0.08 deleterious(0) probably_damaging(0.984) TCGA-GF-A6C9-06 13 37569619 37569619 C G ALG5 Missense_Mutation p.D61H 0.17 deleterious(0.02) possibly_damaging(0.896) TCGA-GF-A6C9-06 13 37678517 37678517 C T CSNK1A1L Missense_Mutation p.D293N 0.09 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-GF-A6C9-06 13 38154775 38154775 C T POSTN Silent p.A484A 0.16 TCGA-GF-A6C9-06 13 46287786 46287786 G A SPERT Missense_Mutation p.R209Q 0.11 tolerated(0.29) benign(0.036) TCGA-GF-A6C9-06 13 47409714 47409714 C T HTR2A Missense_Mutation p.G225E 0.14 tolerated(0.58) benign(0.017) TCGA-GF-A6C9-06 13 49852543 49852543 C T CDADC1 Missense_Mutation p.P370S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 13 52602476 52602476 C T ALG11 Missense_Mutation p.A410V 0.09 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 13 52952597 52952597 G C THSD1 Missense_Mutation p.P503R 0.19 tolerated(0.4) benign(0.007) TCGA-GF-A6C9-06 13 53039548 53039548 C T CKAP2 Missense_Mutation p.P476L 0.08 deleterious(0) possibly_damaging(0.787) TCGA-GF-A6C9-06 13 58299295 58299295 C T PCDH17 Missense_Mutation p.A1116V 0.08 tolerated_low_confidence(0.06) benign(0.016) TCGA-GF-A6C9-06 13 61102641 61102641 C T TDRD3 Missense_Mutation p.R428C 0.09 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 13 61987731 61987731 G A PCDH20 Silent p.S167S 0.19 TCGA-GF-A6C9-06 13 70514312 70514312 G A KLHL1 Missense_Mutation p.L292F 0.19 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 13 72255991 72255991 C T DACH1 Silent p.E302E 0.09 TCGA-GF-A6C9-06 13 76374858 76374858 G A LMO7 5'UTR 0.09 TCGA-GF-A6C9-06 13 77672094 77672096 ATG TA MYCBP2 Frame_Shift_Del p.H3027* 0.18 TCGA-GF-A6C9-06 13 84454485 84454485 C T SLITRK1 Silent p.K386K 0.10 TCGA-GF-A6C9-06 13 84455231 84455231 C T SLITRK1 Missense_Mutation p.D138N 0.27 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 13 86369482 86369482 T G SLITRK6 Missense_Mutation p.T388P 0.09 deleterious(0.01) possibly_damaging(0.588) TCGA-GF-A6C9-06 13 92345656 92345656 C T GPC5 Missense_Mutation p.P181S 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 13 92560235 92560235 G A GPC5 Missense_Mutation p.G442E 0.16 tolerated(0.08) benign(0.082) TCGA-GF-A6C9-06 13 96229504 96229504 C T CLDN10 Silent p.L162L 0.12 TCGA-GF-A6C9-06 13 96412327 96412327 C T DNAJC3 Nonsense_Mutation p.R194* 0.12 TCGA-GF-A6C9-06 13 99356564 99356564 C T SLC15A1 Nonsense_Mutation p.W465* 0.21 TCGA-GF-A6C9-06 13 99947440 99947440 C T GPR183 Missense_Mutation p.M320I 0.23 deleterious(0.05) benign(0.114) TCGA-GF-A6C9-06 14 101350858 101350858 C T RTL1 Missense_Mutation p.D90N 0.12 tolerated_low_confidence(0.1) benign(0.116) TCGA-GF-A6C9-06 14 105414721 105414721 G A AHNAK2 Missense_Mutation p.S2356F 0.22 benign(0.004) TCGA-GF-A6C9-06 14 105421457 105421457 G A AHNAK2 Missense_Mutation p.T163I 0.13 probably_damaging(0.952) TCGA-GF-A6C9-06 14 106236023 106236023 G A IGHG3 Missense_Mutation p.P261L 0.31 deleterious(0) probably_damaging(0.96) TCGA-GF-A6C9-06 14 106552703 106552703 G A IGHV3-9 Silent p.F9F 0.21 TCGA-GF-A6C9-06 14 20216258 20216258 C T OR4Q3 Silent p.I224I 0.09 TCGA-GF-A6C9-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.07 deleterious(0) possibly_damaging(0.659) TCGA-GF-A6C9-06 14 20444027 20444027 C T OR4K15 Missense_Mutation p.S117F 0.16 deleterious(0) probably_damaging(0.954) TCGA-GF-A6C9-06 14 20502478 20502478 G A OR4K13 Missense_Mutation p.S147F 0.19 tolerated(0.18) benign(0.002) TCGA-GF-A6C9-06 14 20502663 20502663 G A OR4K13 Silent p.F85F 0.19 TCGA-GF-A6C9-06 14 20528839 20528839 C T OR4L1 Silent p.I212I 0.13 TCGA-GF-A6C9-06 14 20528900 20528900 C T OR4L1 Missense_Mutation p.L233F 0.10 tolerated(0.06) probably_damaging(0.93) TCGA-GF-A6C9-06 14 20665881 20665881 C T OR11G2 Silent p.I129I 0.08 TCGA-GF-A6C9-06 14 21162093 21162093 T C ANG Missense_Mutation p.F124L 0.13 tolerated(0.63) benign(0.017) TCGA-GF-A6C9-06 14 21250264 21250264 G A RNASE6 Missense_Mutation p.D136N 0.14 deleterious(0.04) possibly_damaging(0.706) TCGA-GF-A6C9-06 14 21269993 21269993 G A RNASE1 Silent p.L79L 0.10 TCGA-GF-A6C9-06 14 22102492 22102492 G A OR10G2 Silent p.F169F 0.16 TCGA-GF-A6C9-06 14 22102944 22102944 G A OR10G2 Silent p.L19L 0.08 TCGA-GF-A6C9-06 14 22133574 22133574 C T OR4E2 Missense_Mutation p.S93F 0.11 deleterious(0.01) benign(0.049) TCGA-GF-A6C9-06 14 22192065 22192065 G A TRAV3 5'UTR 0.19 TCGA-GF-A6C9-06 14 22447102 22447102 G A TRAV8-6 Missense_Mutation p.S28N 0.13 tolerated(0.22) benign(0.049) TCGA-GF-A6C9-06 14 22465967 22465967 C T TRAV17 Nonsense_Mutation p.Q15* 0.18 TCGA-GF-A6C9-06 14 22508914 22508914 G A TRAV20 Silent p.E2E 0.08 TCGA-GF-A6C9-06 14 22564730 22564730 C T TRDV1 Missense_Mutation p.P61S 0.09 tolerated(0.18) benign(0.103) TCGA-GF-A6C9-06 14 22924275 22924275 G A TRDJ4 Silent p.L12L 0.15 TCGA-GF-A6C9-06 14 23868105 23868105 C T MYH6 Missense_Mutation p.E575K 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 14 23884450 23884450 C T MYH7 Silent p.K1771K 0.07 TCGA-GF-A6C9-06 14 23889255 23889255 C T MYH7 Silent p.R1175R 0.21 TCGA-GF-A6C9-06 14 23902316 23902316 G A MYH7 Missense_Mutation p.R108C 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 14 24114042 24114042 G A DHRS2 Missense_Mutation p.M231I 0.15 tolerated(0.43) benign(0.003) TCGA-GF-A6C9-06 14 24794630 24794630 G A ADCY4 Silent p.F592F 0.15 TCGA-GF-A6C9-06 14 24795355 24795355 C T ADCY4 Missense_Mutation p.G529R 0.21 tolerated(0.35) benign(0.009) TCGA-GF-A6C9-06 14 25077568 25077568 C T GZMH Missense_Mutation p.A36T 0.07 deleterious(0.01) possibly_damaging(0.877) TCGA-GF-A6C9-06 14 26918095 26918095 C T NOVA1 Missense_Mutation p.M198I 0.07 tolerated(0.05) unknown(0) TCGA-GF-A6C9-06 14 28733789 28733789 G A BNIP3P1 RNA 0.14 TCGA-GF-A6C9-06 14 30046450 30046450 G A PRKD1 Silent p.I911I 0.08 TCGA-GF-A6C9-06 14 30066847 30066847 G A PRKD1 Missense_Mutation p.R762C 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 14 31348070 31348070 G A COCH Missense_Mutation p.R98Q 0.11 tolerated(1) benign(0.029) TCGA-GF-A6C9-06 14 31535417 31535417 C T AP4S1 Silent p.F5F 0.12 TCGA-GF-A6C9-06 14 33684578 33684578 G A NPAS3 Missense_Mutation p.D111N 0.16 deleterious(0.03) possibly_damaging(0.539) TCGA-GF-A6C9-06 14 35255046 35255046 G A BAZ1A Missense_Mutation p.R590C 0.16 deleterious(0) probably_damaging(0.919) TCGA-GF-A6C9-06 14 38278040 38278040 G A TTC6 Missense_Mutation p.E1520K 0.21 deleterious(0.02) possibly_damaging(0.747) TCGA-GF-A6C9-06 14 39517881 39517881 G A SEC23A Missense_Mutation p.S571L 0.12 tolerated(0.05) possibly_damaging(0.585) TCGA-GF-A6C9-06 14 44975117 44975117 G A FSCB Silent p.S358S 0.26 TCGA-GF-A6C9-06 14 54417318 54417318 G A BMP4 Missense_Mutation p.A220V 0.16 deleterious(0) probably_damaging(0.975) TCGA-GF-A6C9-06 14 59112785 59112785 T G DACT1 Missense_Mutation p.S482A 0.21 tolerated(1) benign(0.138) TCGA-GF-A6C9-06 14 60212694 60212694 G A RTN1 Silent p.I249I 0.18 TCGA-GF-A6C9-06 14 60213053 60213053 C T RTN1 Missense_Mutation p.E130K 0.31 deleterious(0) benign(0.016) TCGA-GF-A6C9-06 14 63316527 63316527 G A KCNH5 Silent p.F471F 0.15 TCGA-GF-A6C9-06 14 64165346 64165346 G A SGPP1 Missense_Mutation p.P239S 0.17 tolerated(0.07) benign(0.155) TCGA-GF-A6C9-06 14 64529494 64529494 A G SYNE2 Missense_Mutation p.R3365G 0.10 benign(0.014) TCGA-GF-A6C9-06 14 64589053 64589053 C T SYNE2 Missense_Mutation p.P4444S 0.18 benign(0.01) TCGA-GF-A6C9-06 14 65262342 65262342 C T SPTB Missense_Mutation p.D453N 0.08 deleterious(0.03) possibly_damaging(0.708) TCGA-GF-A6C9-06 14 67669921 67669921 C T FAM71D Silent p.A90A 0.17 TCGA-GF-A6C9-06 14 70459191 70459191 G A SMOC1 Splice_Site p.X195_splice 0.10 TCGA-GF-A6C9-06 14 70991640 70991640 G A ADAM20 5'UTR 0.09 TCGA-GF-A6C9-06 14 71204985 71204985 C T MAP3K9 Silent p.K607K 0.14 TCGA-GF-A6C9-06 14 71216688 71216688 G A MAP3K9 Missense_Mutation p.P371L 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 14 71543030 71543030 C T PCNX Missense_Mutation p.P1744L 0.16 tolerated(1) probably_damaging(0.999) TCGA-GF-A6C9-06 14 72055379 72055379 G A SIPA1L1 Missense_Mutation p.G264R 0.14 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 14 72921280 72921280 G A RGS6 Missense_Mutation p.D77N 0.16 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 14 73029257 73029257 C T RGS6 3'Flank 0.31 TCGA-GF-A6C9-06 14 74824815 74824815 C T VRTN Silent p.A443A 0.19 TCGA-GF-A6C9-06 14 77580598 77580598 A T CIPC Missense_Mutation p.L379F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 14 77808177 77808177 G A TMED8 Silent p.F305F 0.16 TCGA-GF-A6C9-06 14 86088013 86088013 G A FLRT2 Missense_Mutation p.R52Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 14 86088883 86088883 C T FLRT2 Missense_Mutation p.P342L 0.16 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 14 88477185 88477185 G A GPR65 5'UTR 0.10 TCGA-GF-A6C9-06 14 91077094 91077094 G A TTC7B Missense_Mutation p.P653L 0.13 deleterious(0.03) possibly_damaging(0.548) TCGA-GF-A6C9-06 14 92088176 92088176 G A CATSPERB Missense_Mutation p.A679V 0.16 deleterious(0) probably_damaging(0.948) TCGA-GF-A6C9-06 14 94044216 94044216 G A UNC79 Missense_Mutation p.R570Q 0.19 deleterious(0.03) benign(0.152) TCGA-GF-A6C9-06 14 94066933 94066933 G A UNC79 Missense_Mutation p.D954N 0.21 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 14 94754868 94754868 G A SERPINA10 Silent p.V249V 0.11 TCGA-GF-A6C9-06 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.15 TCGA-GF-A6C9-06 14 94770679 94770679 C T SERPINA6 3'UTR 0.21 TCGA-GF-A6C9-06 14 94780659 94780659 G A SERPINA6 Silent p.F109F 0.10 TCGA-GF-A6C9-06 14 94780930 94780930 G T SERPINA6 Missense_Mutation p.T19N 0.15 deleterious(0.04) benign(0.06) TCGA-GF-A6C9-06 14 94931100 94931100 C T SERPINA9 Missense_Mutation p.D350N 0.10 tolerated(0.34) benign(0.013) TCGA-GF-A6C9-06 14 95030088 95030088 C T SERPINA4 Missense_Mutation p.S90F 0.21 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 14 95090040 95090040 G A SERPINA3 Silent p.V387V 0.20 TCGA-GF-A6C9-06 14 95574384 95574384 G A DICER1 Missense_Mutation p.S828F 0.15 deleterious(0) probably_damaging(0.965) TCGA-GF-A6C9-06 14 96706854 96706854 C T BDKRB2 Silent p.F63F 0.09 TCGA-GF-A6C9-06 14 96707364 96707364 C T BDKRB2 Silent p.F233F 0.19 TCGA-GF-A6C9-06 14 96768431 96768431 G A ATG2B Silent p.A1684A 0.20 TCGA-GF-A6C9-06 15 100211647 100211647 C T MEF2A Intron 0.12 TCGA-GF-A6C9-06 15 100331764 100331764 G A AC090825.1 5'Flank 0.12 TCGA-GF-A6C9-06 15 101188569 101188569 C T ASB7 Nonsense_Mutation p.R287* 0.10 TCGA-GF-A6C9-06 15 22382583 22382583 C T OR4N4 Silent p.I37I 0.09 TCGA-GF-A6C9-06 15 23811339 23811339 C T MKRN3 Missense_Mutation p.A137V 0.09 tolerated(0.45) possibly_damaging(0.588) TCGA-GF-A6C9-06 15 23932279 23932279 G A NDN Missense_Mutation p.S29L 0.15 deleterious_low_confidence(0.01) benign(0) TCGA-GF-A6C9-06 15 24921159 24921159 G A NPAP1 Missense_Mutation p.G49S 0.10 tolerated(0.6) probably_damaging(0.935) TCGA-GF-A6C9-06 15 24923615 24923615 C T NPAP1 Silent p.A867A 0.12 TCGA-GF-A6C9-06 15 25207321 25207321 C T SNURF Silent p.V25V 0.12 TCGA-GF-A6C9-06 15 25422057 25422057 G A SNORD115-4 RNA 0.15 TCGA-GF-A6C9-06 15 25438522 25438522 C T SNORD115-11 3'Flank 0.12 TCGA-GF-A6C9-06 15 25486968 25486968 G A SNORD115-39 RNA 0.08 TCGA-GF-A6C9-06 15 28443892 28443892 G A HERC2 Silent p.C2580C 0.10 TCGA-GF-A6C9-06 15 31362362 31362362 C T TRPM1 Missense_Mutation p.E68K 0.19 tolerated(0.83) benign(0.007) TCGA-GF-A6C9-06 15 33988599 33988599 C T RYR3 Missense_Mutation p.T2014I 0.09 possibly_damaging(0.835) TCGA-GF-A6C9-06 15 34150116 34150116 G A RYR3 Splice_Site p.X4714_splice 0.22 TCGA-GF-A6C9-06 15 34395661 34395661 C T PGBD4 Missense_Mutation p.S310L 0.19 tolerated(0.09) possibly_damaging(0.762) TCGA-GF-A6C9-06 15 35082538 35082538 G A ACTC1 3'UTR 0.13 TCGA-GF-A6C9-06 15 35084685 35084685 C T ACTC1 Silent p.L180L 0.17 TCGA-GF-A6C9-06 15 38808492 38808492 T G RASGRP1 Missense_Mutation p.K194T 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 15 39881163 39881163 G A THBS1 Missense_Mutation p.G550E 0.15 deleterious(0.04) probably_damaging(0.995) TCGA-GF-A6C9-06 15 39886529 39886529 C T THBS1 Silent p.I1131I 0.15 TCGA-GF-A6C9-06 15 40093988 40093988 G A GPR176 Missense_Mutation p.S298F 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-GF-A6C9-06 15 40557098 40557098 C T PAK6 Missense_Mutation p.P38S 0.07 tolerated(0.31) probably_damaging(0.999) TCGA-GF-A6C9-06 15 40662159 40662159 C T DISP2 Silent p.F1282F 0.15 TCGA-GF-A6C9-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.17 deleterious_low_confidence(0.01) benign(0.118) TCGA-GF-A6C9-06 15 40699896 40699896 C T IVD Silent p.I71I 0.11 TCGA-GF-A6C9-06 15 40703759 40703759 C T IVD Missense_Mutation p.H189Y 0.16 tolerated(0.85) benign(0.001) TCGA-GF-A6C9-06 15 40913196 40913196 C T CASC5 Missense_Mutation p.S271F 0.14 deleterious(0.03) possibly_damaging(0.748) TCGA-GF-A6C9-06 15 41272544 41272544 G A INO80 Silent p.S1516S 0.14 TCGA-GF-A6C9-06 15 41815067 41815067 G A RPAP1 Missense_Mutation p.P880S 0.08 tolerated(0.15) possibly_damaging(0.84) TCGA-GF-A6C9-06 15 41819100 41819100 C T RPAP1 Missense_Mutation p.R638Q 0.10 deleterious(0.02) possibly_damaging(0.618) TCGA-GF-A6C9-06 15 42105143 42105143 C T MAPKBP1 Silent p.G221G 0.14 TCGA-GF-A6C9-06 15 42135969 42135969 G A PLA2G4B Missense_Mutation p.R511K 0.14 tolerated(1) benign(0) TCGA-GF-A6C9-06 15 42174916 42174916 G A SPTBN5 Missense_Mutation p.T638I 0.19 probably_damaging(0.923) TCGA-GF-A6C9-06 15 42441990 42441990 A T PLA2G4F Missense_Mutation p.F327Y 0.10 deleterious(0.05) possibly_damaging(0.728) TCGA-GF-A6C9-06 15 43038336 43038336 G A TTBK2 Missense_Mutation p.P1131L 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GF-A6C9-06 15 43473430 43473430 C T TMEM62 Missense_Mutation p.S513F 0.11 deleterious(0.04) benign(0.009) TCGA-GF-A6C9-06 15 43571824 43571824 C T TGM7 Silent p.K559K 0.08 TCGA-GF-A6C9-06 15 43668348 43668348 G A TUBGCP4 Missense_Mutation p.R44Q 0.13 tolerated(0.13) benign(0.202) TCGA-GF-A6C9-06 15 43817883 43817883 G A MAP1A Silent p.Q1404Q 0.13 TCGA-GF-A6C9-06 15 43820995 43820995 C T MAP1A Missense_Mutation p.R2442W 0.19 benign(0.035) TCGA-GF-A6C9-06 15 44084470 44084470 G A SERF2 5'Flank 0.19 TCGA-GF-A6C9-06 15 44166325 44166325 C T FRMD5 Missense_Mutation p.E491K 0.10 tolerated(0.92) benign(0.021) TCGA-GF-A6C9-06 15 45007679 45007679 C T B2M Silent p.F42F 0.16 TCGA-GF-A6C9-06 15 45393034 45393034 G A DUOX2 Missense_Mutation p.S975F 0.08 tolerated(0.13) benign(0.153) TCGA-GF-A6C9-06 15 48056159 48056159 C T SEMA6D Missense_Mutation p.P287L 0.14 deleterious(0) possibly_damaging(0.713) TCGA-GF-A6C9-06 15 48056375 48056375 C T SEMA6D Missense_Mutation p.P324S 0.17 tolerated(0.07) possibly_damaging(0.878) TCGA-GF-A6C9-06 15 48782181 48782181 G A FBN1 Silent p.S983S 0.17 TCGA-GF-A6C9-06 15 48805805 48805805 G A FBN1 Missense_Mutation p.S510L 0.15 possibly_damaging(0.821) TCGA-GF-A6C9-06 15 49292128 49292128 G A SECISBP2L Missense_Mutation p.P769S 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 15 49663592 49663592 G A FAM227B Silent p.I339I 0.19 TCGA-GF-A6C9-06 15 50168575 50168575 G A ATP8B4 Missense_Mutation p.A976V 0.14 tolerated(0.31) benign(0.008) TCGA-GF-A6C9-06 15 50168634 50168634 G A ATP8B4 Silent p.F956F 0.13 TCGA-GF-A6C9-06 15 50540483 50540483 G A HDC Missense_Mutation p.R367W 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 15 51397267 51397267 C T TNFAIP8L3 Missense_Mutation p.R36K 0.14 tolerated_low_confidence(0.47) benign(0.004) TCGA-GF-A6C9-06 15 51791468 51791468 G A DMXL2 Missense_Mutation p.S1318F 0.09 deleterious(0.03) benign(0.056) TCGA-GF-A6C9-06 15 51828912 51828912 G A DMXL2 Missense_Mutation p.P589S 0.12 tolerated(0.77) benign(0.001) TCGA-GF-A6C9-06 15 51975487 51975487 G A SCG3 Missense_Mutation p.E85K 0.19 tolerated_low_confidence(0.13) benign(0.003) TCGA-GF-A6C9-06 15 53889421 53889421 C T WDR72 Missense_Mutation p.M1001I 0.16 tolerated(0.2) benign(0.091) TCGA-GF-A6C9-06 15 53957906 53957906 C T WDR72 Missense_Mutation p.D609N 0.11 tolerated(0.1) benign(0.029) TCGA-GF-A6C9-06 15 54015068 54015068 G A WDR72 Missense_Mutation p.S64L 0.13 deleterious(0) possibly_damaging(0.802) TCGA-GF-A6C9-06 15 54306202 54306202 G A UNC13C Missense_Mutation p.D368N 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.848) TCGA-GF-A6C9-06 15 54306726 54306726 C T UNC13C Silent p.F542F 0.17 TCGA-GF-A6C9-06 15 56216890 56216890 G A NEDD4 Missense_Mutation p.P82L 0.27 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 15 57815687 57815687 G A CGNL1 Missense_Mutation p.G906R 0.17 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 15 58253007 58253007 G A ALDH1A2 Missense_Mutation p.P482L 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 15 58471423 58471423 C T AQP9 Missense_Mutation p.L198F 0.14 tolerated(0.24) benign(0.35) TCGA-GF-A6C9-06 15 63901459 63901459 C T HERC1 Missense_Mutation p.D4803N 0.20 probably_damaging(0.999) TCGA-GF-A6C9-06 15 65490893 65490893 G A CILP Silent p.I577I 0.10 TCGA-GF-A6C9-06 15 65499198 65499198 C T CILP Missense_Mutation p.G116S 0.15 deleterious(0) probably_damaging(0.977) TCGA-GF-A6C9-06 15 68502091 68502091 G A CLN6 Silent p.I183I 0.21 TCGA-GF-A6C9-06 15 70960074 70960074 T C UACA Silent p.V983V 0.14 TCGA-GF-A6C9-06 15 71300833 71300833 C T LRRC49 Silent p.L434L 0.13 TCGA-GF-A6C9-06 15 71535205 71535205 G A THSD4 Missense_Mutation p.D228N 0.11 tolerated(0.34) benign(0.001) TCGA-GF-A6C9-06 15 72037539 72037539 G A THSD4 Silent p.E667E 0.11 TCGA-GF-A6C9-06 15 72244111 72244111 G A MYO9A Intron 0.11 TCGA-GF-A6C9-06 15 72455760 72455760 G A GRAMD2 Missense_Mutation p.P268L 0.09 tolerated(0.42) benign(0) TCGA-GF-A6C9-06 15 73615898 73615898 G A HCN4 Missense_Mutation p.P846S 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-GF-A6C9-06 15 74032779 74032779 G A C15orf59 Missense_Mutation p.P121S 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-GF-A6C9-06 15 74328096 74328096 C T PML Intron 0.08 TCGA-GF-A6C9-06 15 74467514 74467514 C T ISLR Silent p.L105L 0.10 TCGA-GF-A6C9-06 15 74468502 74468502 C T ISLR 3'UTR 0.23 TCGA-GF-A6C9-06 15 75015449 75015449 G A CYP1A1 5'UTR 0.25 TCGA-GF-A6C9-06 15 75310737 75310737 C T SCAMP5 Intron 0.06 TCGA-GF-A6C9-06 15 75499584 75499584 C T C15orf39 Missense_Mutation p.P399S 0.14 tolerated(0.11) possibly_damaging(0.803) TCGA-GF-A6C9-06 15 75499585 75499585 C T C15orf39 Missense_Mutation p.P399L 0.15 deleterious(0.05) possibly_damaging(0.851) TCGA-GF-A6C9-06 15 75941881 75941881 C T SNX33 Silent p.S146S 0.18 TCGA-GF-A6C9-06 15 78211436 78211436 C T RP11-114H24.7 Intron 0.17 TCGA-GF-A6C9-06 15 78487013 78487013 G A ACSBG1 Silent p.P96P 0.13 TCGA-GF-A6C9-06 15 79058327 79058327 G A ADAMTS7 Missense_Mutation p.S1309F 0.13 deleterious(0.01) benign(0.11) TCGA-GF-A6C9-06 15 79317679 79317679 C T RASGRF1 Missense_Mutation p.G507R 0.13 deleterious(0) probably_damaging(0.921) TCGA-GF-A6C9-06 15 81221462 81221462 G A KIAA1199 Silent p.R853R 0.16 TCGA-GF-A6C9-06 15 82422900 82422900 G A EFTUD1 Silent p.I1059I 0.10 TCGA-GF-A6C9-06 15 82443887 82443887 G A EFTUD1 Missense_Mutation p.R970C 0.16 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 15 83933157 83933157 C T BNC1 Silent p.G282G 0.17 TCGA-GF-A6C9-06 15 84159572 84159572 C T SH3GL3 Intron 0.25 TCGA-GF-A6C9-06 15 84287021 84287021 C T SH3GL3 Silent p.I342I 0.16 TCGA-GF-A6C9-06 15 84639263 84639263 C T ADAMTSL3 Nonsense_Mutation p.Q840* 0.10 TCGA-GF-A6C9-06 15 84651261 84651261 A C ADAMTSL3 Missense_Mutation p.I961L 0.09 deleterious(0.01) benign(0.394) TCGA-GF-A6C9-06 15 85343111 85343111 C T ZNF592 Missense_Mutation p.S1059F 0.21 tolerated(0.18) probably_damaging(0.999) TCGA-GF-A6C9-06 15 85401496 85401496 G A ALPK3 Missense_Mutation p.G1378E 0.45 tolerated(0.3) benign(0.03) TCGA-GF-A6C9-06 15 85406132 85406132 G A ALPK3 Missense_Mutation p.D1668N 0.22 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 15 85660996 85660996 C T PDE8A Missense_Mutation p.P554S 0.10 tolerated(0.71) benign(0.018) TCGA-GF-A6C9-06 15 86123597 86123597 C T AKAP13 Silent p.V766V 0.16 TCGA-GF-A6C9-06 15 88522484 88522484 G A NTRK3 Intron 0.16 TCGA-GF-A6C9-06 15 88522558 88522558 G A NTRK3 Intron 0.09 TCGA-GF-A6C9-06 15 89398533 89398533 C T ACAN Missense_Mutation p.S906F 0.09 deleterious(0) probably_damaging(0.976) TCGA-GF-A6C9-06 15 89804019 89804019 C T FANCI Missense_Mutation p.S78L 0.17 deleterious(0.01) possibly_damaging(0.469) TCGA-GF-A6C9-06 15 89828358 89828358 C T FANCI Missense_Mutation p.S577F 0.12 deleterious(0.01) probably_damaging(0.914) TCGA-GF-A6C9-06 15 89866725 89866725 G A POLG Silent p.P725P 0.13 TCGA-GF-A6C9-06 15 90349759 90349759 C T ANPEP Missense_Mutation p.G19D 0.16 deleterious(0) probably_damaging(0.939) TCGA-GF-A6C9-06 15 91172590 91172590 C T CRTC3 Silent p.L364L 0.07 TCGA-GF-A6C9-06 15 92459285 92459285 C T SLCO3A1 Silent p.I81I 0.11 TCGA-GF-A6C9-06 15 92988028 92988028 C T ST8SIA2 Silent p.I237I 0.15 TCGA-GF-A6C9-06 15 94858841 94858841 G A MCTP2 Silent p.R204R 0.19 TCGA-GF-A6C9-06 15 97327486 97327486 G A SPATA8 Missense_Mutation p.E65K 0.14 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-GF-A6C9-06 15 97328321 97328321 C T SPATA8 Silent p.L98L 0.16 TCGA-GF-A6C9-06 16 10273906 10273906 G A GRIN2A Silent p.F121F 0.13 TCGA-GF-A6C9-06 16 10273956 10273956 C T GRIN2A Missense_Mutation p.D105N 0.13 tolerated(0.18) probably_damaging(0.988) TCGA-GF-A6C9-06 16 10524804 10524804 G A ATF7IP2 Silent p.L109L 0.09 TCGA-GF-A6C9-06 16 10729698 10729698 C T TEKT5 Silent p.L388L 0.14 TCGA-GF-A6C9-06 16 10971183 10971183 A G CIITA 5'UTR 0.15 TCGA-GF-A6C9-06 16 112888 112888 G A RHBDF1 Missense_Mutation p.S227F 0.13 deleterious(0.01) possibly_damaging(0.701) TCGA-GF-A6C9-06 16 11370155 11370155 C T PRM2 Missense_Mutation p.E25K 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.621) TCGA-GF-A6C9-06 16 12059233 12059233 T C TNFRSF17 Silent p.L18L 0.22 TCGA-GF-A6C9-06 16 14029259 14029259 G A ERCC4 Silent p.R490R 0.19 TCGA-GF-A6C9-06 16 142649 142649 G A NPRL3 Missense_Mutation p.S369F 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 16 17353004 17353004 C T XYLT1 Missense_Mutation p.D252N 0.11 tolerated(0.13) benign(0.005) TCGA-GF-A6C9-06 16 18602573 18602573 G A ABCC6P1 RNA 0.16 TCGA-GF-A6C9-06 16 19027857 19027857 G A TMC7 Missense_Mutation p.E133K 0.13 tolerated(0.27) benign(0.005) TCGA-GF-A6C9-06 16 19032967 19032967 G A TMC7 Silent p.G159G 0.10 TCGA-GF-A6C9-06 16 19451694 19451694 G A TMC5 Missense_Mutation p.E112K 0.15 tolerated_low_confidence(0.22) benign(0.159) TCGA-GF-A6C9-06 16 19455518 19455518 G A TMC5 Missense_Mutation p.E302K 0.08 tolerated(0.28) benign(0.002) TCGA-GF-A6C9-06 16 19501773 19501773 C T TMC5 Missense_Mutation p.S877F 0.17 deleterious(0) possibly_damaging(0.713) TCGA-GF-A6C9-06 16 19501774 19501774 C T TMC5 Silent p.S877S 0.17 TCGA-GF-A6C9-06 16 19884066 19884066 G A GPRC5B Silent p.S34S 0.19 TCGA-GF-A6C9-06 16 20043374 20043374 G A GPR139 Missense_Mutation p.L249F 0.10 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-GF-A6C9-06 16 20043561 20043561 G A GPR139 Silent p.I186I 0.09 TCGA-GF-A6C9-06 16 2024953 2024953 T C TBL3 Silent p.P163P 0.14 TCGA-GF-A6C9-06 16 2026061 2026061 C T TBL3 Silent p.I378I 0.10 TCGA-GF-A6C9-06 16 20330963 20330963 G A GP2 Missense_Mutation p.A332V 0.12 deleterious(0) benign(0.063) TCGA-GF-A6C9-06 16 20335417 20335417 C T GP2 Missense_Mutation p.D86N 0.17 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 16 20335512 20335512 G A GP2 Missense_Mutation p.P54L 0.15 tolerated(0.07) benign(0.023) TCGA-GF-A6C9-06 16 20384441 20384441 T G PDILT Missense_Mutation p.K229Q 0.13 deleterious(0.02) possibly_damaging(0.843) TCGA-GF-A6C9-06 16 20430791 20430791 G A ACSM5 Intron 0.15 TCGA-GF-A6C9-06 16 2050068 2050068 G A ZNF598 Silent p.P494P 0.26 TCGA-GF-A6C9-06 16 20966232 20966232 G A DNAH3 Silent p.F3658F 0.14 TCGA-GF-A6C9-06 16 20994180 20994180 C T DNAH3 Silent p.R2574R 0.16 TCGA-GF-A6C9-06 16 20996645 20996645 A G DNAH3 Silent p.L2473L 0.12 TCGA-GF-A6C9-06 16 20996763 20996763 C T DNAH3 Missense_Mutation p.G2434D 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 16 21042447 21042447 G A DNAH3 Missense_Mutation p.R1787C 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 16 21042583 21042583 C T DNAH3 Silent p.V1741V 0.21 TCGA-GF-A6C9-06 16 21045351 21045351 G A DNAH3 Silent p.G1714G 0.08 TCGA-GF-A6C9-06 16 21212778 21212778 G A ZP2 Missense_Mutation p.P536S 0.07 deleterious(0.04) possibly_damaging(0.609) TCGA-GF-A6C9-06 16 21213507 21213507 G A ZP2 Missense_Mutation p.S402F 0.17 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 16 2156476 2156476 G A PKD1 Missense_Mutation p.P2471L 0.32 probably_damaging(1) TCGA-GF-A6C9-06 16 21698751 21698751 C T OTOA Silent p.I139I 0.19 TCGA-GF-A6C9-06 16 22319543 22319543 G A POLR3E Silent p.Q54Q 0.18 TCGA-GF-A6C9-06 16 23637631 23637631 C T PALB2 Missense_Mutation p.E892K 0.12 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 16 23716293 23716293 G A ERN2 Silent p.F303F 0.12 TCGA-GF-A6C9-06 16 2373439 2373439 C T ABCA3 Intron 0.18 TCGA-GF-A6C9-06 16 2503215 2503215 C T CCNF Missense_Mutation p.H498Y 0.17 tolerated(0.83) benign(0.009) TCGA-GF-A6C9-06 16 26147297 26147297 G A HS3ST4 Missense_Mutation p.E367K 0.21 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 16 27640068 27640068 C T KIAA0556 Missense_Mutation p.A76V 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 16 27640069 27640069 C T KIAA0556 Silent p.A76A 0.09 TCGA-GF-A6C9-06 16 28878032 28878032 C T SH2B1 Missense_Mutation p.A206V 0.08 tolerated(0.09) benign(0.231) TCGA-GF-A6C9-06 16 28883641 28883641 C T SH2B1 Silent p.S548S 0.11 TCGA-GF-A6C9-06 16 28914391 28914391 G A ATP2A1 Missense_Mutation p.V929M 0.14 tolerated(0.13) possibly_damaging(0.53) TCGA-GF-A6C9-06 16 29088030 29088030 A T RRN3P2 RNA 0.13 TCGA-GF-A6C9-06 16 30116135 30116135 C T GDPD3 3'UTR 0.11 TCGA-GF-A6C9-06 16 30409822 30409822 C T ZNF48 Silent p.P417P 0.12 TCGA-GF-A6C9-06 16 30516712 30516712 C T ITGAL Silent p.I765I 0.13 TCGA-GF-A6C9-06 16 30976205 30976205 C T SETD1A Missense_Mutation p.S381F 0.15 possibly_damaging(0.831) TCGA-GF-A6C9-06 16 31089326 31089326 G T ZNF646 Nonsense_Mutation p.E561* 0.09 TCGA-GF-A6C9-06 16 31371685 31371685 C T ITGAX Silent p.L254L 0.14 TCGA-GF-A6C9-06 16 31424225 31424225 G A ITGAD Missense_Mutation p.D592N 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-GF-A6C9-06 16 31476589 31476589 C T ARMC5 Intron 0.21 TCGA-GF-A6C9-06 16 33647235 33647235 C T RP11-812E19.9 Missense_Mutation p.G122E 0.10 deleterious_low_confidence(0.02) benign(0.371) TCGA-GF-A6C9-06 16 3454874 3454874 T G ZNF174 Intron 0.10 TCGA-GF-A6C9-06 16 3633095 3633095 T C SLX4 Intron 0.13 TCGA-GF-A6C9-06 16 4500442 4500442 C T DNAJA3 Missense_Mutation p.A428V 0.18 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 16 46766267 46766267 C T MYLK3 Missense_Mutation p.E439K 0.19 tolerated(0.88) benign(0) TCGA-GF-A6C9-06 16 4700391 4700391 C T MGRN1 Silent p.F38F 0.14 TCGA-GF-A6C9-06 16 47195664 47195664 C T ITFG1 Missense_Mutation p.R553Q 0.12 tolerated(0.16) probably_damaging(0.979) TCGA-GF-A6C9-06 16 4849730 4849730 C T ROGDI Missense_Mutation p.R130Q 0.15 tolerated(0.38) possibly_damaging(0.776) TCGA-GF-A6C9-06 16 48580147 48580147 G A N4BP1 Silent p.F748F 0.11 TCGA-GF-A6C9-06 16 4935359 4935359 C T PPL Silent p.K1099K 0.13 TCGA-GF-A6C9-06 16 4953920 4953920 A G PPL Missense_Mutation p.M95T 0.14 deleterious(0) possibly_damaging(0.722) TCGA-GF-A6C9-06 16 50342258 50342258 C T ADCY7 Missense_Mutation p.S624F 0.14 deleterious(0) probably_damaging(0.914) TCGA-GF-A6C9-06 16 50367574 50367574 T - BRD7 Frame_Shift_Del p.S308Afs*4 0.19 TCGA-GF-A6C9-06 16 50744693 50744693 G A NOD2 Missense_Mutation p.D291N 0.15 deleterious(0.04) possibly_damaging(0.842) TCGA-GF-A6C9-06 16 51175392 51175392 G A SALL1 Silent p.I247I 0.10 TCGA-GF-A6C9-06 16 55519266 55519266 C T MMP2 Silent p.F195F 0.08 TCGA-GF-A6C9-06 16 55725924 55725924 C T SLC6A2 Missense_Mutation p.A293V 0.09 tolerated(0.58) probably_damaging(0.973) TCGA-GF-A6C9-06 16 55862811 55862811 C T CES1 Missense_Mutation p.G43E 0.09 deleterious(0.04) possibly_damaging(0.679) TCGA-GF-A6C9-06 16 55909211 55909211 G A CES5A Intron 0.21 TCGA-GF-A6C9-06 16 56868648 56868648 C T NUP93 Silent p.F580F 0.12 TCGA-GF-A6C9-06 16 57714429 57714429 G A GPR97 Missense_Mutation p.D261N 0.21 deleterious(0.03) probably_damaging(0.915) TCGA-GF-A6C9-06 16 57731833 57731833 C T CCDC135 5'UTR 0.09 TCGA-GF-A6C9-06 16 57931808 57931808 C T CNGB1 Missense_Mutation p.G996D 0.07 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 16 57931809 57931809 C T CNGB1 Missense_Mutation p.G996S 0.07 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 16 58011876 58011876 G A TEPP Missense_Mutation p.M107I 0.14 deleterious(0.02) benign(0.212) TCGA-GF-A6C9-06 16 58011877 58011877 G A TEPP Missense_Mutation p.D108N 0.14 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 16 58036399 58036399 C T USB1 Missense_Mutation p.P39S 0.11 tolerated(0.33) benign(0.009) TCGA-GF-A6C9-06 16 65032495 65032495 G A CDH11 Missense_Mutation p.H165Y 0.18 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 16 65032635 65032635 C T CDH11 Missense_Mutation p.R118Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 16 66887392 66887392 C T CA7 Silent p.F262F 0.09 TCGA-GF-A6C9-06 16 66887393 66887393 C T CA7 Missense_Mutation p.R263W 0.10 deleterious(0.01) benign(0) TCGA-GF-A6C9-06 16 67227419 67227419 G A E2F4 Splice_Site p.X151_splice 0.10 TCGA-GF-A6C9-06 16 67327786 67327786 G A KCTD19 Missense_Mutation p.P627S 0.08 tolerated_low_confidence(0.09) possibly_damaging(0.718) TCGA-GF-A6C9-06 16 677618 677618 C T RAB40C Missense_Mutation p.S281F 0.12 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-GF-A6C9-06 16 68009769 68009769 T C DPEP3 Missense_Mutation p.T481A 0.22 tolerated_low_confidence(0.17) benign(0.02) TCGA-GF-A6C9-06 16 69279525 69279525 A G SNTB2 Missense_Mutation p.T201A 0.15 deleterious(0.01) possibly_damaging(0.836) TCGA-GF-A6C9-06 16 70908242 70908242 G A HYDIN Silent p.I3638I 0.13 TCGA-GF-A6C9-06 16 70954536 70954536 C T HYDIN Nonsense_Mutation p.W2581* 0.11 TCGA-GF-A6C9-06 16 70977783 70977783 C T HYDIN Missense_Mutation p.E2201K 0.18 benign(0.317) TCGA-GF-A6C9-06 16 71026020 71026020 G A HYDIN Silent p.I1246I 0.17 TCGA-GF-A6C9-06 16 71417914 71417914 C T CALB2 Silent p.L173L 0.09 TCGA-GF-A6C9-06 16 71683851 71683851 G A PHLPP2 Missense_Mutation p.P972S 0.11 tolerated(0.27) benign(0.006) TCGA-GF-A6C9-06 16 71748699 71748699 A G PHLPP2 5'UTR 0.14 TCGA-GF-A6C9-06 16 71748712 71748712 A T PHLPP2 Intron 0.25 TCGA-GF-A6C9-06 16 72107824 72107824 G A HPR Nonsense_Mutation p.W13* 0.08 TCGA-GF-A6C9-06 16 72163011 72163011 C T PMFBP1 Missense_Mutation p.G635E 0.21 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 16 72188328 72188328 C T PMFBP1 Missense_Mutation p.E66K 0.17 tolerated(0.45) benign(0.009) TCGA-GF-A6C9-06 16 72827914 72827914 C T ZFHX3 Silent p.R2889R 0.28 TCGA-GF-A6C9-06 16 72828490 72828490 C T ZFHX3 Silent p.R2697R 0.11 TCGA-GF-A6C9-06 16 74524979 74524979 G A GLG1 Nonsense_Mutation p.R457* 0.09 TCGA-GF-A6C9-06 16 75563428 75563428 G A CHST5 Silent p.F285F 0.09 TCGA-GF-A6C9-06 16 76555058 76555058 C T CNTNAP4 Missense_Mutation p.S723F 0.14 tolerated(0.27) benign(0.162) TCGA-GF-A6C9-06 16 77355084 77355084 G A ADAMTS18 Missense_Mutation p.H727Y 0.09 tolerated(0.2) benign(0.001) TCGA-GF-A6C9-06 16 77389879 77389879 G A ADAMTS18 Missense_Mutation p.S473L 0.14 deleterious(0) possibly_damaging(0.904) TCGA-GF-A6C9-06 16 77918628 77918628 G A VAT1L Missense_Mutation p.E336K 0.18 tolerated(0.73) benign(0.049) TCGA-GF-A6C9-06 16 82033623 82033623 C T SDR42E1 Missense_Mutation p.R92Q 0.17 tolerated(0.11) benign(0.037) TCGA-GF-A6C9-06 16 82101834 82101834 G A HSD17B2 Missense_Mutation p.V109I 0.10 deleterious(0) possibly_damaging(0.764) TCGA-GF-A6C9-06 16 84203779 84203779 C T DNAAF1 Missense_Mutation p.P449S 0.14 tolerated(0.73) benign(0.006) TCGA-GF-A6C9-06 16 84256591 84256591 G A KCNG4 Silent p.I264I 0.24 TCGA-GF-A6C9-06 16 84472808 84472808 C T ATP2C2 Silent p.I341I 0.10 TCGA-GF-A6C9-06 16 863484 863484 T A PRR25 Missense_Mutation p.C278S 0.17 deleterious_low_confidence(0) benign(0.291) TCGA-GF-A6C9-06 16 89349846 89349846 T G ANKRD11 Missense_Mutation p.K1035T 0.13 possibly_damaging(0.488) TCGA-GF-A6C9-06 16 89715851 89715851 G A CHMP1A Missense_Mutation p.R54C 0.11 deleterious(0) possibly_damaging(0.696) TCGA-GF-A6C9-06 16 89715852 89715852 G A CHMP1A Silent p.I53I 0.11 TCGA-GF-A6C9-06 16 89799752 89799752 T - ZNF276 Frame_Shift_Del p.E405Kfs*47 0.09 TCGA-GF-A6C9-06 17 10209780 10209780 T C MYH13 Missense_Mutation p.N1821S 0.20 tolerated(0.49) benign(0.039) TCGA-GF-A6C9-06 17 10216570 10216570 C T MYH13 Silent p.Q1362Q 0.09 TCGA-GF-A6C9-06 17 10258295 10258295 G A MYH13 Missense_Mutation p.S273F 0.23 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 17 10265493 10265493 C T MYH13 Silent p.Q149Q 0.17 TCGA-GF-A6C9-06 17 10307677 10307677 C T MYH8 Silent p.E886E 0.29 TCGA-GF-A6C9-06 17 10312891 10312891 G A MYH8 Silent p.F534F 0.22 TCGA-GF-A6C9-06 17 10351338 10351338 C T MYH4 Missense_Mutation p.D1588N 0.17 deleterious(0.03) benign(0.012) TCGA-GF-A6C9-06 17 10354189 10354189 C T MYH4 Missense_Mutation p.E1297K 0.16 deleterious(0) possibly_damaging(0.852) TCGA-GF-A6C9-06 17 10355560 10355560 C T MYH4 Missense_Mutation p.E1146K 0.10 deleterious(0) probably_damaging(0.916) TCGA-GF-A6C9-06 17 10356235 10356235 C T MYH4 Silent p.L1042L 0.13 TCGA-GF-A6C9-06 17 10356609 10356609 C T MYH4 Missense_Mutation p.E991K 0.26 deleterious(0) possibly_damaging(0.496) TCGA-GF-A6C9-06 17 10399289 10399289 C T MYH1 Missense_Mutation p.R1716H 0.19 deleterious(0) probably_damaging(0.964) TCGA-GF-A6C9-06 17 10399728 10399728 C T MYH1 Missense_Mutation p.E1599K 0.17 tolerated(0.06) benign(0.331) TCGA-GF-A6C9-06 17 10404495 10404495 C T MYH1 Missense_Mutation p.E1224K 0.10 deleterious(0) possibly_damaging(0.858) TCGA-GF-A6C9-06 17 10408334 10408334 C T MYH1 Silent p.V828V 0.15 TCGA-GF-A6C9-06 17 10426691 10426691 C T MYH2 Silent p.K1837K 0.22 TCGA-GF-A6C9-06 17 10428870 10428870 C T MYH2 Missense_Mutation p.E1479K 0.10 deleterious(0.03) probably_damaging(0.952) TCGA-GF-A6C9-06 17 10428871 10428871 C T MYH2 Silent p.K1478K 0.11 TCGA-GF-A6C9-06 17 10434961 10434961 G A MYH2 Nonsense_Mutation p.Q896* 0.24 TCGA-GF-A6C9-06 17 10436605 10436605 C T MYH2 Missense_Mutation p.R813K 0.14 tolerated(0.06) benign(0.026) TCGA-GF-A6C9-06 17 11568276 11568276 G A DNAH9 Missense_Mutation p.E908K 0.11 benign(0.027) TCGA-GF-A6C9-06 17 11593517 11593517 C T DNAH9 Missense_Mutation p.P1460S 0.12 benign(0.098) TCGA-GF-A6C9-06 17 11593518 11593518 C T DNAH9 Missense_Mutation p.P1460L 0.11 benign(0.02) TCGA-GF-A6C9-06 17 11726160 11726160 C T DNAH9 Missense_Mutation p.H3019Y 0.10 probably_damaging(0.991) TCGA-GF-A6C9-06 17 11726320 11726320 G A DNAH9 Missense_Mutation p.G3072E 0.21 probably_damaging(0.994) TCGA-GF-A6C9-06 17 1264431 1264431 G A YWHAE Missense_Mutation p.S178F 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.679) TCGA-GF-A6C9-06 17 12649237 12649237 G A MYOCD Missense_Mutation p.E325K 0.08 tolerated(0.37) possibly_damaging(0.61) TCGA-GF-A6C9-06 17 1444893 1444893 G A PITPNA Silent p.T113T 0.15 TCGA-GF-A6C9-06 17 18023298 18023298 C T MYO15A Missense_Mutation p.P395L 0.09 benign(0.001) TCGA-GF-A6C9-06 17 18707527 18707527 A T TVP23B Missense_Mutation p.K180M 0.13 deleterious(0.01) possibly_damaging(0.687) TCGA-GF-A6C9-06 17 20361531 20361531 C T LGALS9B Missense_Mutation p.D100N 0.24 deleterious(0.02) benign(0.017) TCGA-GF-A6C9-06 17 26101376 26101376 C T NOS2 Nonsense_Mutation p.W461* 0.08 TCGA-GF-A6C9-06 17 28791710 28791710 C T CPD Missense_Mutation p.H1341Y 0.08 deleterious_low_confidence(0.02) benign(0.418) TCGA-GF-A6C9-06 17 28886626 28886626 C T TBC1D29 5'UTR 0.16 TCGA-GF-A6C9-06 17 29632052 29632052 T A EVI2B Missense_Mutation p.K192N 0.13 tolerated(0.12) possibly_damaging(0.895) TCGA-GF-A6C9-06 17 30348594 30348594 C T LRRC37B Silent p.N143N 0.09 TCGA-GF-A6C9-06 17 32583287 32583287 G A CCL2 Silent p.R41R 0.09 TCGA-GF-A6C9-06 17 33504138 33504138 C T UNC45B Missense_Mutation p.P712S 0.24 deleterious(0.02) benign(0.356) TCGA-GF-A6C9-06 17 33749706 33749706 G A SLFN12 Silent p.T114T 0.12 TCGA-GF-A6C9-06 17 34072032 34072032 G A GAS2L2 Silent p.S828S 0.19 TCGA-GF-A6C9-06 17 34266253 34266253 C T LYZL6 Silent p.L36L 0.23 TCGA-GF-A6C9-06 17 35640208 35640208 G A ACACA Silent p.F190F 0.09 TCGA-GF-A6C9-06 17 35974296 35974296 G A DDX52 3'UTR 0.21 TCGA-GF-A6C9-06 17 36047316 36047316 G A HNF1B 3'UTR 0.12 TCGA-GF-A6C9-06 17 36091719 36091719 C T HNF1B Silent p.R304R 0.07 TCGA-GF-A6C9-06 17 36099603 36099603 C T HNF1B Missense_Mutation p.M124I 0.14 deleterious(0.04) benign(0.098) TCGA-GF-A6C9-06 17 36689599 36689599 G A SRCIN1 Missense_Mutation p.S1162L 0.11 deleterious_low_confidence(0) benign(0.062) TCGA-GF-A6C9-06 17 37627841 37627841 C T CDK12 Missense_Mutation p.P586S 0.09 benign(0.002) TCGA-GF-A6C9-06 17 3773149 3773149 G A CAMKK1 Silent p.I424I 0.24 TCGA-GF-A6C9-06 17 37819081 37819081 C T STARD3 Missense_Mutation p.H420Y 0.09 deleterious(0.03) possibly_damaging(0.809) TCGA-GF-A6C9-06 17 37864606 37864606 C T ERBB2 Silent p.I86I 0.07 TCGA-GF-A6C9-06 17 37899207 37899207 T A GRB7 Silent p.G144G 0.16 TCGA-GF-A6C9-06 17 37903036 37903036 G A GRB7 Missense_Mutation p.M518I 0.10 tolerated(0.09) possibly_damaging(0.732) TCGA-GF-A6C9-06 17 38133378 38133378 C T GSDMA 3'UTR 0.16 TCGA-GF-A6C9-06 17 38925311 38925311 C T KRT26 Missense_Mutation p.G336E 0.15 deleterious(0.01) benign(0.056) TCGA-GF-A6C9-06 17 38990992 38990992 C T TMEM99 Missense_Mutation p.S75F 0.07 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-GF-A6C9-06 17 39116612 39116612 C T KRT39 Missense_Mutation p.E380K 0.14 tolerated(0.32) possibly_damaging(0.773) TCGA-GF-A6C9-06 17 39135199 39135199 G A KRT40 Silent p.I351I 0.07 TCGA-GF-A6C9-06 17 39183456 39183456 G A KRTAP1-4 3'Flank 0.27 TCGA-GF-A6C9-06 17 39296672 39296672 G A KRTAP4-6 Missense_Mutation p.P23L 0.13 deleterious(0) unknown(0) TCGA-GF-A6C9-06 17 39503326 39503326 C T KRT33A Nonsense_Mutation p.W246* 0.09 TCGA-GF-A6C9-06 17 39550277 39550277 G A KRT31 Silent p.F414F 0.21 TCGA-GF-A6C9-06 17 39578648 39578648 G A KRT37 Silent p.F257F 0.08 TCGA-GF-A6C9-06 17 39597142 39597142 G A KRT38 Missense_Mutation p.P11L 0.19 tolerated(0.09) benign(0.001) TCGA-GF-A6C9-06 17 39623270 39623270 A G KRT32 Missense_Mutation p.L103P 0.09 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 17 39635664 39635664 C T KRT35 Missense_Mutation p.D216N 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-GF-A6C9-06 17 39888629 39888629 C T HAP1 Nonsense_Mutation p.W189* 0.22 TCGA-GF-A6C9-06 17 39975505 39975505 C T FKBP10 Silent p.L257L 0.08 TCGA-GF-A6C9-06 17 40065273 40065273 C T ACLY Silent p.L195L 0.11 TCGA-GF-A6C9-06 17 40169487 40169487 C T NKIRAS2 5'UTR 0.12 TCGA-GF-A6C9-06 17 40255814 40255814 G A DHX58 Silent p.I522I 0.23 TCGA-GF-A6C9-06 17 40765958 40765958 C T TUBG1 Missense_Mutation p.P262L 0.20 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C9-06 17 40831554 40831554 C T CCR10 3'UTR 0.09 TCGA-GF-A6C9-06 17 40933179 40933179 G A WNK4 Missense_Mutation p.E155K 0.10 deleterious(0) unknown(0) TCGA-GF-A6C9-06 17 40940194 40940194 C T WNK4 Missense_Mutation p.S637F 0.11 deleterious(0) unknown(0) TCGA-GF-A6C9-06 17 41004340 41004340 G A AOC3 Missense_Mutation p.G327E 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-GF-A6C9-06 17 41063350 41063350 C T G6PC Silent p.F327F 0.10 TCGA-GF-A6C9-06 17 41243916 41243916 G A BRCA1 Missense_Mutation p.S1211F 0.12 tolerated(0.08) possibly_damaging(0.885) TCGA-GF-A6C9-06 17 42333050 42333050 G A SLC4A1 Silent p.F597F 0.12 TCGA-GF-A6C9-06 17 42335105 42335105 G A SLC4A1 Silent p.F451F 0.20 TCGA-GF-A6C9-06 17 42953379 42953379 G A EFTUD2 Silent p.I264I 0.08 TCGA-GF-A6C9-06 17 42961028 42961028 G A EFTUD2 Missense_Mutation p.H139Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 17 4348367 4348367 C T SPNS3 Silent p.G102G 0.19 TCGA-GF-A6C9-06 17 43923066 43923066 C T SPPL2C Missense_Mutation p.S265L 0.10 tolerated(0.27) possibly_damaging(0.821) TCGA-GF-A6C9-06 17 4536531 4536531 G A ALOX15 Missense_Mutation p.P443L 0.18 tolerated(1) probably_damaging(0.939) TCGA-GF-A6C9-06 17 4536766 4536766 C T ALOX15 Silent p.L397L 0.18 TCGA-GF-A6C9-06 17 45368325 45368325 C T ITGB3 Silent p.I377I 0.15 TCGA-GF-A6C9-06 17 45897727 45897727 G A OSBPL7 5'UTR 0.36 TCGA-GF-A6C9-06 17 46474123 46474123 C T SKAP1 Missense_Mutation p.G24D 0.10 tolerated(0.23) benign(0.004) TCGA-GF-A6C9-06 17 46621989 46621989 G A HOXB2 Silent p.F95F 0.09 TCGA-GF-A6C9-06 17 46673703 46673703 C T HOXB6 3'UTR 0.26 TCGA-GF-A6C9-06 17 47304121 47304121 C T PHOSPHO1 Splice_Site 0.11 TCGA-GF-A6C9-06 17 47590131 47590131 G A NGFR Silent p.E348E 0.10 TCGA-GF-A6C9-06 17 48149449 48149449 C T ITGA3 Silent p.F353F 0.22 TCGA-GF-A6C9-06 17 48264056 48264056 C T COL1A1 Silent p.K1253K 0.17 TCGA-GF-A6C9-06 17 48668808 48668808 C T CACNA1G Silent p.I822I 0.25 TCGA-GF-A6C9-06 17 48683428 48683428 G A CACNA1G Intron 0.13 TCGA-GF-A6C9-06 17 48695653 48695653 C T CACNA1G Silent p.F1792F 0.07 TCGA-GF-A6C9-06 17 48741356 48741356 G A ABCC3 Missense_Mutation p.E408K 0.10 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 17 48827944 48827944 G A LUC7L3 Silent p.S407S 0.15 TCGA-GF-A6C9-06 17 48941183 48941183 G A TOB1 Missense_Mutation p.P66S 0.06 tolerated(0.12) benign(0.061) TCGA-GF-A6C9-06 17 4907323 4907323 C T KIF1C Missense_Mutation p.P299S 0.17 deleterious(0.01) possibly_damaging(0.859) TCGA-GF-A6C9-06 17 534807 534807 G A VPS53 Missense_Mutation p.P224S 0.16 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 17 5445346 5445346 A G NLRP1 Silent p.L844L 0.33 TCGA-GF-A6C9-06 17 54559794 54559794 C T ANKFN1 Silent p.A726A 0.07 TCGA-GF-A6C9-06 17 54671847 54671847 C A NOG Missense_Mutation p.P88H 0.12 tolerated(0.55) benign(0.001) TCGA-GF-A6C9-06 17 54671848 54671848 C T NOG Silent p.P88P 0.12 TCGA-GF-A6C9-06 17 56247618 56247618 C T OR4D2 Missense_Mutation p.S201F 0.26 tolerated(0.14) benign(0.098) TCGA-GF-A6C9-06 17 56358051 56358051 G A MPO Silent p.L23L 0.10 TCGA-GF-A6C9-06 17 56386323 56386323 G A BZRAP1 Missense_Mutation p.P1437L 0.12 tolerated(0.19) benign(0.009) TCGA-GF-A6C9-06 17 56676956 56676956 G A TEX14 Missense_Mutation p.P590S 0.13 tolerated(0.88) benign(0.004) TCGA-GF-A6C9-06 17 57288585 57288585 C G SMG8 Silent p.S391S 0.09 TCGA-GF-A6C9-06 17 58711311 58711311 C T PPM1D Missense_Mutation p.P267S 0.13 deleterious(0) probably_damaging(0.983) TCGA-GF-A6C9-06 17 59093111 59093111 G A BCAS3 Splice_Site p.X496_splice 0.19 TCGA-GF-A6C9-06 17 5984012 5984012 C T WSCD1 Missense_Mutation p.L12F 0.08 tolerated(0.81) probably_damaging(0.999) TCGA-GF-A6C9-06 17 60484460 60484460 G A EFCAB3 Missense_Mutation p.V304M 0.13 tolerated(0.35) benign(0.067) TCGA-GF-A6C9-06 17 61601504 61601504 G A KCNH6 Silent p.R27R 0.11 TCGA-GF-A6C9-06 17 62125254 62125254 G A ERN1 Silent p.F831F 0.19 TCGA-GF-A6C9-06 17 62518864 62518864 G A CEP95 Missense_Mutation p.G254R 0.18 tolerated(0.1) probably_damaging(1) TCGA-GF-A6C9-06 17 63221186 63221186 C T RGS9 Missense_Mutation p.P492S 0.11 tolerated_low_confidence(0.19) benign(0.231) TCGA-GF-A6C9-06 17 64225435 64225435 C T APOH Silent p.R21R 0.17 TCGA-GF-A6C9-06 17 65871758 65871758 C T BPTF Intron 0.22 TCGA-GF-A6C9-06 17 65907066 65907066 G A BPTF Missense_Mutation p.M1022I 0.17 benign(0) TCGA-GF-A6C9-06 17 66538259 66538259 C T FAM20A Missense_Mutation p.E326K 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 17 6683532 6683532 C T FBXO39 Silent p.L115L 0.23 TCGA-GF-A6C9-06 17 67293376 67293376 A G ABCA5 Silent p.I464I 0.11 TCGA-GF-A6C9-06 17 7095250 7095250 G A DLG4 Silent p.I689I 0.26 TCGA-GF-A6C9-06 17 72301378 72301378 G A DNAI2 Silent p.G336G 0.10 TCGA-GF-A6C9-06 17 72436788 72436788 C T GPRC5C Silent p.F336F 0.21 TCGA-GF-A6C9-06 17 7246729 7246729 G A ACAP1 Missense_Mutation p.D126N 0.11 tolerated(0.09) benign(0.069) TCGA-GF-A6C9-06 17 72469862 72469862 C T CD300A Silent p.S76S 0.15 TCGA-GF-A6C9-06 17 72518835 72518835 G A CD300LB 3'UTR 0.13 TCGA-GF-A6C9-06 17 72610103 72610103 C T CD300E Missense_Mutation p.R153Q 0.26 tolerated(0.79) benign(0.001) TCGA-GF-A6C9-06 17 72938055 72938055 G A OTOP3 Missense_Mutation p.D184N 0.12 tolerated(0.29) benign(0.004) TCGA-GF-A6C9-06 17 7360037 7360037 C T CHRNB1 Missense_Mutation p.P501S 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 17 73658822 73658822 G A RECQL5 Missense_Mutation p.R170C 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 17 73999426 73999426 G A CDK3 Missense_Mutation p.G247R 0.11 tolerated(0.31) benign(0.005) TCGA-GF-A6C9-06 17 74060213 74060213 C T SRP68 Nonsense_Mutation p.W135* 0.06 TCGA-GF-A6C9-06 17 74077578 74077578 C T EXOC7 3'Flank 0.19 TCGA-GF-A6C9-06 17 74288615 74288615 G A QRICH2 Silent p.V565V 0.11 TCGA-GF-A6C9-06 17 74309914 74309914 G A PRPSAP1 Silent p.I280I 0.12 TCGA-GF-A6C9-06 17 74936846 74936846 C T MGAT5B Silent p.F597F 0.16 TCGA-GF-A6C9-06 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.19 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 17 76503713 76503713 C T DNAH17 Missense_Mutation p.E1467K 0.12 benign(0.131) TCGA-GF-A6C9-06 17 7673916 7673916 C T DNAH2 Silent p.L1380L 0.11 TCGA-GF-A6C9-06 17 7736237 7736237 T G DNAH2 Nonsense_Mutation p.Y4323* 0.23 TCGA-GF-A6C9-06 17 7736238 7736238 C T DNAH2 Missense_Mutation p.P4324S 0.22 possibly_damaging(0.752) TCGA-GF-A6C9-06 17 78013838 78013838 C T CCDC40 Silent p.I107I 0.19 TCGA-GF-A6C9-06 17 79225240 79225240 G A SLC38A10 Intron 0.10 TCGA-GF-A6C9-06 17 79478251 79478251 G A ACTG1 Silent p.F255F 0.13 TCGA-GF-A6C9-06 17 79517941 79517941 G A C17orf70 Silent p.F193F 0.18 TCGA-GF-A6C9-06 17 79536077 79536077 G A NPLOC4 Missense_Mutation p.P472S 0.20 deleterious(0.02) possibly_damaging(0.502) TCGA-GF-A6C9-06 17 79792349 79792349 C T PPP1R27 Intron 0.21 TCGA-GF-A6C9-06 17 79954687 79954687 G A ASPSCR1 Missense_Mutation p.E300K 0.11 tolerated(0.3) unknown(0) TCGA-GF-A6C9-06 17 80274818 80274818 C T CD7 Missense_Mutation p.G41E 0.23 tolerated(0.06) possibly_damaging(0.822) TCGA-GF-A6C9-06 17 8166505 8166505 C T PFAS Missense_Mutation p.R497C 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 17 8784066 8784066 C T PIK3R5 Missense_Mutation p.D845N 0.18 tolerated(0.5) benign(0.003) TCGA-GF-A6C9-06 17 9538848 9538848 G A WDR16 Missense_Mutation p.G483R 0.19 deleterious(0.02) possibly_damaging(0.658) TCGA-GF-A6C9-06 18 21343407 21343407 G A LAMA3 Missense_Mutation p.D368N 0.20 probably_damaging(1) TCGA-GF-A6C9-06 18 21394388 21394388 C T LAMA3 Missense_Mutation p.H604Y 0.11 benign(0.049) TCGA-GF-A6C9-06 18 21437843 21437843 G A LAMA3 Missense_Mutation p.R1391Q 0.14 benign(0.055) TCGA-GF-A6C9-06 18 28669455 28669455 C T DSC2 Missense_Mutation p.G193R 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 18 28720117 28720117 C T DSC1 Missense_Mutation p.E470K 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-GF-A6C9-06 18 28913685 28913685 C T DSG1 Missense_Mutation p.S273L 0.18 deleterious(0.02) benign(0.009) TCGA-GF-A6C9-06 18 28914126 28914126 G A DSG1 Missense_Mutation p.M322I 0.12 deleterious(0.03) possibly_damaging(0.526) TCGA-GF-A6C9-06 18 2892255 2892255 G A EMILIN2 Silent p.E710E 0.16 TCGA-GF-A6C9-06 18 30913173 30913173 G A CCDC178 Nonsense_Mutation p.Q282* 0.19 TCGA-GF-A6C9-06 18 31326097 31326097 A G ASXL3 Silent p.E2095E 0.18 TCGA-GF-A6C9-06 18 32395921 32395921 C T DTNA Missense_Mutation p.P218S 0.09 tolerated(0.34) possibly_damaging(0.615) TCGA-GF-A6C9-06 18 40503639 40503639 C T RIT2 Silent p.Q108Q 0.13 TCGA-GF-A6C9-06 18 42532136 42532136 G A SETBP1 Missense_Mutation p.S944N 0.18 tolerated(0.24) benign(0.008) TCGA-GF-A6C9-06 18 44284563 44284563 C T ST8SIA5 Missense_Mutation p.E66K 0.18 benign(0.073) TCGA-GF-A6C9-06 18 44559889 44559889 C T TCEB3B Missense_Mutation p.E583K 0.15 deleterious(0.05) benign(0.404) TCGA-GF-A6C9-06 18 44560333 44560333 C T TCEB3B Missense_Mutation p.E435K 0.17 tolerated(0.25) probably_damaging(0.95) TCGA-GF-A6C9-06 18 47108058 47108058 G A LIPG Intron 0.18 TCGA-GF-A6C9-06 18 47527697 47527697 G A MYO5B Silent p.F180F 0.15 TCGA-GF-A6C9-06 18 47778094 47778094 C T CCDC11 Silent p.E178E 0.06 TCGA-GF-A6C9-06 18 47801557 47801557 G A MBD1 Missense_Mutation p.P284L 0.10 deleterious(0.02) possibly_damaging(0.462) TCGA-GF-A6C9-06 18 48190316 48190316 C T MAPK4 5'UTR 0.18 TCGA-GF-A6C9-06 18 48252354 48252354 C T MAPK4 Silent p.I292I 0.13 TCGA-GF-A6C9-06 18 48703595 48703595 G A MEX3C Missense_Mutation p.P369L 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 18 50683781 50683781 G A DCC Silent p.L439L 0.11 TCGA-GF-A6C9-06 18 50705382 50705382 G A DCC Missense_Mutation p.G490E 0.17 tolerated(0.7) benign(0.094) TCGA-GF-A6C9-06 18 50731657 50731657 G A DCC Missense_Mutation p.E549K 0.10 tolerated(0.05) benign(0.2) TCGA-GF-A6C9-06 18 51013218 51013218 G A DCC Missense_Mutation p.G1263E 0.09 deleterious(0.02) probably_damaging(0.936) TCGA-GF-A6C9-06 18 51025800 51025800 G A DCC Missense_Mutation p.S1344N 0.12 deleterious(0) probably_damaging(0.986) TCGA-GF-A6C9-06 18 51057059 51057059 G A DCC 3'UTR 0.16 TCGA-GF-A6C9-06 18 52265293 52265293 G A DYNAP Missense_Mutation p.A184T 0.08 tolerated(0.81) unknown(0) TCGA-GF-A6C9-06 18 52556598 52556598 G A RAB27B Missense_Mutation p.G204E 0.11 tolerated(1) benign(0) TCGA-GF-A6C9-06 18 52896080 52896080 C T TCF4 Missense_Mutation p.R728Q 0.12 deleterious(0) probably_damaging(0.968) TCGA-GF-A6C9-06 18 52901819 52901819 C T TCF4 Silent p.A584A 0.13 TCGA-GF-A6C9-06 18 55024351 55024351 C T ST8SIA3 Silent p.I170I 0.19 TCGA-GF-A6C9-06 18 55027310 55027310 G A ST8SIA3 Silent p.E315E 0.16 TCGA-GF-A6C9-06 18 55328594 55328594 C T ATP8B1 Missense_Mutation p.R840K 0.23 tolerated(0.24) benign(0.01) TCGA-GF-A6C9-06 18 56203543 56203543 T G ALPK2 Missense_Mutation p.E1292D 0.10 tolerated(0.3) benign(0.028) TCGA-GF-A6C9-06 18 57103356 57103356 G A CCBE1 Silent p.F335F 0.09 TCGA-GF-A6C9-06 18 59170316 59170316 C T CDH20 Silent p.L264L 0.11 TCGA-GF-A6C9-06 18 59195287 59195287 C T CDH20 Missense_Mutation p.P369S 0.08 tolerated(0.14) benign(0.325) TCGA-GF-A6C9-06 18 59483635 59483635 G A RNF152 Missense_Mutation p.P21L 0.18 tolerated(0.21) possibly_damaging(0.883) TCGA-GF-A6C9-06 18 59483636 59483636 G A RNF152 Missense_Mutation p.P21S 0.17 tolerated(0.23) possibly_damaging(0.77) TCGA-GF-A6C9-06 18 5956174 5956174 G A L3MBTL4 3'UTR 0.14 TCGA-GF-A6C9-06 18 61225600 61225600 G A SERPINB12 Missense_Mutation p.E62K 0.18 deleterious(0.04) possibly_damaging(0.56) TCGA-GF-A6C9-06 18 61225615 61225615 G A SERPINB12 Missense_Mutation p.E67K 0.18 tolerated(0.25) benign(0.015) TCGA-GF-A6C9-06 18 61228387 61228387 G A SERPINB12 Missense_Mutation p.E152K 0.15 deleterious(0) probably_damaging(0.989) TCGA-GF-A6C9-06 18 61262304 61262304 C T SERPINB13 Silent p.S219S 0.09 TCGA-GF-A6C9-06 18 61323097 61323097 G A SERPINB3 Missense_Mutation p.L323F 0.17 deleterious(0.01) possibly_damaging(0.832) TCGA-GF-A6C9-06 18 61390600 61390600 G A SERPINB11 Silent p.T382T 0.08 TCGA-GF-A6C9-06 18 61471587 61471587 G A SERPINB7 Missense_Mutation p.M287I 0.21 tolerated(0.2) benign(0.002) TCGA-GF-A6C9-06 18 61569050 61569050 C T SERPINB2 Silent p.F204F 0.16 TCGA-GF-A6C9-06 18 61570256 61570256 C T SERPINB2 Missense_Mutation p.S322F 0.11 deleterious(0) probably_damaging(0.963) TCGA-GF-A6C9-06 18 61597359 61597359 G A SERPINB10 Missense_Mutation p.G191R 0.15 deleterious(0.02) possibly_damaging(0.682) TCGA-GF-A6C9-06 18 61597403 61597403 G A SERPINB10 Silent p.K205K 0.16 TCGA-GF-A6C9-06 18 63430183 63430183 G A CDH7 Silent p.K35K 0.14 TCGA-GF-A6C9-06 18 67857917 67857917 G A RTTN Missense_Mutation p.S349F 0.14 deleterious(0.03) possibly_damaging(0.704) TCGA-GF-A6C9-06 18 70416268 70416268 C T NETO1 Missense_Mutation p.V533I 0.14 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-GF-A6C9-06 18 70423284 70423284 C T NETO1 Missense_Mutation p.E323K 0.09 deleterious(0) probably_damaging(0.963) TCGA-GF-A6C9-06 18 71815885 71815885 C T TIMM21 5'UTR 0.23 TCGA-GF-A6C9-06 18 7231255 7231255 C T LRRC30 Missense_Mutation p.P40L 0.19 tolerated(0.25) probably_damaging(0.998) TCGA-GF-A6C9-06 18 73130745 73130745 G A SMIM21 Nonsense_Mutation p.R86* 0.14 TCGA-GF-A6C9-06 18 74968140 74968140 G A GALR1 Silent p.L231L 0.09 TCGA-GF-A6C9-06 18 756666 756666 G A YES1 Silent p.F54F 0.22 TCGA-GF-A6C9-06 18 76752138 76752138 G A SALL3 Silent p.E49E 0.23 TCGA-GF-A6C9-06 18 77227601 77227601 C T NFATC1 Intron 0.13 TCGA-GF-A6C9-06 18 9255101 9255101 C T ANKRD12 Silent p.F612F 0.20 TCGA-GF-A6C9-06 19 10127734 10127734 C G RDH8 Silent p.V55V 0.29 TCGA-GF-A6C9-06 19 1014276 1014276 G A TMEM259 Missense_Mutation p.A141V 0.10 tolerated(0.35) benign(0.014) TCGA-GF-A6C9-06 19 10254580 10254580 G A DNMT1 Missense_Mutation p.S993F 0.08 deleterious(0) probably_damaging(0.982) TCGA-GF-A6C9-06 19 1049337 1049337 G A ABCA7 Missense_Mutation p.G818E 0.11 tolerated(0.24) possibly_damaging(0.87) TCGA-GF-A6C9-06 19 10568644 10568644 C T PDE4A Missense_Mutation p.P323S 0.16 tolerated_low_confidence(0.2) benign(0.014) TCGA-GF-A6C9-06 19 10747244 10747244 C T SLC44A2 Silent p.A493A 0.11 TCGA-GF-A6C9-06 19 10904511 10904511 T C DNM2 Missense_Mutation p.F370L 0.09 tolerated(0.06) benign(0.439) TCGA-GF-A6C9-06 19 110652 110652 G A OR4F17 5'UTR 0.08 TCGA-GF-A6C9-06 19 11728767 11728767 C T ZNF627 3'UTR 0.25 TCGA-GF-A6C9-06 19 12297776 12297776 C T ZNF136 Missense_Mutation p.P195S 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-GF-A6C9-06 19 12776227 12776227 G A MAN2B1 Silent p.S125S 0.12 TCGA-GF-A6C9-06 19 12814300 12814300 C T TNPO2 Silent p.E717E 0.15 TCGA-GF-A6C9-06 19 12874530 12874530 G A HOOK2 Silent p.S630S 0.12 TCGA-GF-A6C9-06 19 13410061 13410061 C T CACNA1A Missense_Mutation p.E796K 0.07 benign(0.343) TCGA-GF-A6C9-06 19 13993638 13993638 C T C19orf57 Missense_Mutation p.D631N 0.15 deleterious(0) probably_damaging(0.981) TCGA-GF-A6C9-06 19 14038072 14038072 C T CC2D1A Silent p.I770I 0.15 TCGA-GF-A6C9-06 19 14846998 14846998 G A EMR2 3'UTR 0.15 TCGA-GF-A6C9-06 19 15053050 15053050 C T OR7C2 Silent p.F250F 0.07 TCGA-GF-A6C9-06 19 15131315 15131315 G A CCDC105 Missense_Mutation p.E240K 0.25 deleterious(0) probably_damaging(0.963) TCGA-GF-A6C9-06 19 15198634 15198634 G A OR1I1 Missense_Mutation p.G253E 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 15198722 15198722 C T OR1I1 Silent p.I282I 0.12 TCGA-GF-A6C9-06 19 15224482 15224482 G A SYDE1 Missense_Mutation p.G639D 0.08 tolerated(0.13) benign(0.014) TCGA-GF-A6C9-06 19 15271414 15271414 G A NOTCH3 3'UTR 0.19 TCGA-GF-A6C9-06 19 15354213 15354213 G A BRD4 Silent p.A889A 0.19 TCGA-GF-A6C9-06 19 15752394 15752394 C T CYP4F3 Missense_Mutation p.R57W 0.19 deleterious(0.05) benign(0.052) TCGA-GF-A6C9-06 19 15769547 15769547 C T CYP4F3 Missense_Mutation p.P442L 0.16 deleterious(0) probably_damaging(0.989) TCGA-GF-A6C9-06 19 1578450 1578450 G A MBD3 Silent p.A255A 0.08 TCGA-GF-A6C9-06 19 15839442 15839442 G A OR10H2 Missense_Mutation p.A197T 0.21 tolerated(0.58) benign(0.35) TCGA-GF-A6C9-06 19 15905007 15905007 G A OR10H5 Nonsense_Mutation p.W50* 0.14 TCGA-GF-A6C9-06 19 16060228 16060228 G A OR10H4 Missense_Mutation p.M137I 0.09 deleterious(0.03) benign(0.018) TCGA-GF-A6C9-06 19 1611694 1611694 G A TCF3 3'UTR 0.11 TCGA-GF-A6C9-06 19 16613961 16613961 C T C19orf44 Missense_Mutation p.S282F 0.20 tolerated(0.08) possibly_damaging(0.455) TCGA-GF-A6C9-06 19 16799034 16799034 C T TMEM38A Missense_Mutation p.S251L 0.15 tolerated(0.44) benign(0.012) TCGA-GF-A6C9-06 19 17213224 17213224 C T MYO9B Nonsense_Mutation p.Q233* 0.13 TCGA-GF-A6C9-06 19 17476122 17476122 T G PLVAP Silent p.S384S 0.15 TCGA-GF-A6C9-06 19 17664392 17664392 C T FAM129C 3'UTR 0.15 TCGA-GF-A6C9-06 19 17664393 17664393 C T FAM129C 3'UTR 0.16 TCGA-GF-A6C9-06 19 18085051 18085051 C T KCNN1 Silent p.I118I 0.14 TCGA-GF-A6C9-06 19 18368779 18368779 G A KIAA1683 Silent p.S1105S 0.17 TCGA-GF-A6C9-06 19 18497266 18497266 C T GDF15 Silent p.L89L 0.18 TCGA-GF-A6C9-06 19 18960947 18960947 C T UPF1 Silent p.P175P 0.10 TCGA-GF-A6C9-06 19 19338859 19338859 C T NCAN Silent p.V810V 0.10 TCGA-GF-A6C9-06 19 19465213 19465213 C T MAU2 Missense_Mutation p.P533L 0.15 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 19 19681073 19681073 G A PBX4 Silent p.L159L 0.12 TCGA-GF-A6C9-06 19 19770462 19770462 A G ATP13A1 Missense_Mutation p.F209L 0.13 tolerated(1) benign(0.003) TCGA-GF-A6C9-06 19 19822451 19822451 G A ZNF14 Nonsense_Mutation p.R547* 0.10 TCGA-GF-A6C9-06 19 21265039 21265039 C T ZNF714 5'UTR 0.17 TCGA-GF-A6C9-06 19 21476499 21476499 T C ZNF708 Silent p.E423E 0.22 TCGA-GF-A6C9-06 19 21606699 21606699 C T ZNF493 Missense_Mutation p.A413V 0.08 tolerated(0.12) possibly_damaging(0.849) TCGA-GF-A6C9-06 19 22586275 22586275 G A ZNF98 Silent p.L24L 0.14 TCGA-GF-A6C9-06 19 22940098 22940098 G A ZNF99 3'Flank 0.13 TCGA-GF-A6C9-06 19 22952122 22952122 G A ZNF99 Missense_Mutation p.S3L 0.26 tolerated(0.78) benign(0.159) TCGA-GF-A6C9-06 19 23318800 23318800 G A ZNF730 Missense_Mutation p.E61K 0.08 tolerated(0.17) possibly_damaging(0.903) TCGA-GF-A6C9-06 19 23836735 23836735 G A ZNF675 Missense_Mutation p.H334Y 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-GF-A6C9-06 19 23937629 23937629 G A ZNF681 Silent p.P74P 0.13 TCGA-GF-A6C9-06 19 24010313 24010313 G A RPSAP58 Nonsense_Mutation p.W117* 0.10 TCGA-GF-A6C9-06 19 2410255 2410255 G A TMPRSS9 Splice_Site p.X339_splice 0.11 TCGA-GF-A6C9-06 19 3119271 3119271 C T GNA11 Missense_Mutation p.S268F 0.16 deleterious(0) probably_damaging(0.986) TCGA-GF-A6C9-06 19 31767606 31767606 G A TSHZ3 Silent p.S1031S 0.15 TCGA-GF-A6C9-06 19 31768684 31768684 C T TSHZ3 Missense_Mutation p.S672N 0.08 tolerated(0.34) benign(0.027) TCGA-GF-A6C9-06 19 33135354 33135354 G A ANKRD27 Silent p.S134S 0.05 TCGA-GF-A6C9-06 19 33792420 33792420 C T CEBPA Missense_Mutation p.D301N 0.18 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 19 3496711 3496711 G A DOHH Silent p.L34L 0.12 TCGA-GF-A6C9-06 19 35085145 35085145 G A SCGB2B2 Missense_Mutation p.L61F 0.08 tolerated_low_confidence(0.19) probably_damaging(0.961) TCGA-GF-A6C9-06 19 35532781 35532781 G A HPN 5'UTR 0.26 TCGA-GF-A6C9-06 19 35978642 35978642 G A KRTDAP Missense_Mutation p.P78L 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 19 36109359 36109359 C T HAUS5 Missense_Mutation p.L293F 0.08 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 19 362274 362274 G A THEG Missense_Mutation p.P356S 0.07 tolerated(0.43) benign(0.02) TCGA-GF-A6C9-06 19 36235043 36235043 G A U2AF1L4 Missense_Mutation p.R79W 0.19 deleterious(0.03) benign(0.093) TCGA-GF-A6C9-06 19 36236335 36236335 C T PSENEN 5'UTR 0.12 TCGA-GF-A6C9-06 19 36278137 36278137 C T ARHGAP33 Silent p.P729P 0.18 TCGA-GF-A6C9-06 19 36293111 36293111 G A PRODH2 Missense_Mutation p.H470Y 0.12 tolerated(0.12) possibly_damaging(0.676) TCGA-GF-A6C9-06 19 36341926 36341926 C T NPHS1 Missense_Mutation p.E155K 0.10 tolerated(0.28) benign(0.206) TCGA-GF-A6C9-06 19 36357402 36357402 C T KIRREL2 3'UTR 0.07 TCGA-GF-A6C9-06 19 3648694 3648694 G A PIP5K1C Silent p.I380I 0.14 TCGA-GF-A6C9-06 19 36582358 36582358 C T WDR62 Missense_Mutation p.S734F 0.11 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 19 3736193 3736193 C T TJP3 Silent p.F395F 0.10 TCGA-GF-A6C9-06 19 37368751 37368751 A G ZNF345 Missense_Mutation p.K340R 0.14 deleterious(0.04) benign(0.444) TCGA-GF-A6C9-06 19 3738603 3738603 C T TJP3 Silent p.F454F 0.18 TCGA-GF-A6C9-06 19 3778535 3778535 G A MATK Missense_Mutation p.S420L 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 3785145 3785145 G A MATK Intron 0.14 TCGA-GF-A6C9-06 19 3823361 3823361 C T ZFR2 Nonsense_Mutation p.W418* 0.10 TCGA-GF-A6C9-06 19 38652966 38652966 C T SIPA1L3 Silent p.S1245S 0.13 TCGA-GF-A6C9-06 19 38709597 38709597 C T DPF1 Missense_Mutation p.E161K 0.07 tolerated(0.11) possibly_damaging(0.882) TCGA-GF-A6C9-06 19 38939420 38939420 C T RYR1 Silent p.P363P 0.18 TCGA-GF-A6C9-06 19 38987589 38987589 G A RYR1 Missense_Mutation p.E2296K 0.20 benign(0.108) TCGA-GF-A6C9-06 19 39516062 39516062 G A FBXO27 Missense_Mutation p.R281C 0.07 tolerated(0.07) benign(0.001) TCGA-GF-A6C9-06 19 39597622 39597622 C T PAPL Silent p.F383F 0.15 TCGA-GF-A6C9-06 19 39694666 39694666 C T SYCN Missense_Mutation p.A77T 0.16 tolerated(0.19) possibly_damaging(0.537) TCGA-GF-A6C9-06 19 39788657 39788657 C T IFNL1 Silent p.V101V 0.14 TCGA-GF-A6C9-06 19 39907525 39907525 C T PLEKHG2 Missense_Mutation p.P210L 0.07 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-GF-A6C9-06 19 40900909 40900909 G A PRX Missense_Mutation p.A1117V 0.15 tolerated(0.09) possibly_damaging(0.682) TCGA-GF-A6C9-06 19 41115513 41115513 A G LTBP4 Missense_Mutation p.T569A 0.21 tolerated(0.08) possibly_damaging(0.551) TCGA-GF-A6C9-06 19 4159774 4159774 G A CREB3L3 Missense_Mutation p.D191N 0.14 tolerated(0.09) benign(0.027) TCGA-GF-A6C9-06 19 42082637 42082637 C T CEACAM21 Missense_Mutation p.P4L 0.30 tolerated(0.43) benign(0.145) TCGA-GF-A6C9-06 19 42224890 42224890 C T CEACAM5 Missense_Mutation p.S607L 0.13 tolerated(0.4) possibly_damaging(0.683) TCGA-GF-A6C9-06 19 42353263 42353263 C T DMRTC2 Missense_Mutation p.H232Y 0.09 tolerated(0.2) benign(0.177) TCGA-GF-A6C9-06 19 42474436 42474436 C T ATP1A3 Missense_Mutation p.E828K 0.17 deleterious(0.01) possibly_damaging(0.895) TCGA-GF-A6C9-06 19 42490034 42490034 G A ATP1A3 Silent p.I209I 0.09 TCGA-GF-A6C9-06 19 42490295 42490295 C T ATP1A3 Missense_Mutation p.M161I 0.14 tolerated(0.16) probably_damaging(0.994) TCGA-GF-A6C9-06 19 42794422 42794422 C T CIC Missense_Mutation p.S501F 0.17 probably_damaging(0.966) TCGA-GF-A6C9-06 19 43023318 43023318 G A CEACAM1 Missense_Mutation p.S343F 0.11 deleterious(0.02) benign(0.055) TCGA-GF-A6C9-06 19 43023388 43023388 C T CEACAM1 Splice_Site p.X320_splice 0.07 TCGA-GF-A6C9-06 19 43237141 43237141 G A PSG3 Silent p.T168T 0.14 TCGA-GF-A6C9-06 19 43259249 43259249 C T PSG8 Silent p.R293R 0.11 TCGA-GF-A6C9-06 19 43359795 43359795 C T PSG10P 5'Flank 0.12 TCGA-GF-A6C9-06 19 43371290 43371290 G A PSG1 3'Flank 0.21 TCGA-GF-A6C9-06 19 43576027 43576027 C T PSG2 Silent p.A263A 0.13 TCGA-GF-A6C9-06 19 4365621 4365621 G A SH3GL1 Silent p.A63A 0.07 TCGA-GF-A6C9-06 19 43680128 43680128 G A PSG5 Silent p.I201I 0.11 TCGA-GF-A6C9-06 19 43683259 43683259 C T PSG5 Intron 0.14 TCGA-GF-A6C9-06 19 43689046 43689046 G A PSG5 Silent p.S106S 0.12 TCGA-GF-A6C9-06 19 43702221 43702221 C T PSG4 Missense_Mutation p.G213R 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 43762435 43762435 G A PSG9 Missense_Mutation p.H388Y 0.17 deleterious(0.01) benign(0.38) TCGA-GF-A6C9-06 19 4422787 4422787 C T CHAF1A Silent p.A414A 0.09 TCGA-GF-A6C9-06 19 44351606 44351606 C T ZNF283 Missense_Mutation p.H285Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 19 4447596 4447596 G A UBXN6 Missense_Mutation p.P189L 0.07 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 44536410 44536410 C T ZNF222 Missense_Mutation p.H235Y 0.12 deleterious(0.01) benign(0.238) TCGA-GF-A6C9-06 19 44591126 44591126 C T ZNF284 Missense_Mutation p.R499C 0.11 deleterious(0.05) possibly_damaging(0.878) TCGA-GF-A6C9-06 19 44636366 44636366 C T ZNF225 Silent p.V533V 0.16 TCGA-GF-A6C9-06 19 44932986 44932986 C T ZNF229 Missense_Mutation p.R657K 0.14 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 19 45285708 45285708 G A CBLC Missense_Mutation p.V247I 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 19 45731474 45731474 G A EXOC3L2 Silent p.H47H 0.14 TCGA-GF-A6C9-06 19 45857994 45857994 A C ERCC2 Nonsense_Mutation p.Y553* 0.16 TCGA-GF-A6C9-06 19 45912178 45912178 C T CD3EAP Silent p.L318L 0.14 TCGA-GF-A6C9-06 19 46307541 46307541 C T RSPH6A Nonsense_Mutation p.W541* 0.13 TCGA-GF-A6C9-06 19 46825152 46825152 C T HIF3A Silent p.L422L 0.18 TCGA-GF-A6C9-06 19 46879771 46879771 G T PPP5C Missense_Mutation p.M191I 0.11 tolerated(0.79) benign(0.223) TCGA-GF-A6C9-06 19 47151623 47151623 G A DACT3 3'UTR 0.12 TCGA-GF-A6C9-06 19 47542697 47542697 C G NPAS1 Missense_Mutation p.H279Q 0.19 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 19 47918073 47918073 C T MEIS3 Silent p.K166K 0.14 TCGA-GF-A6C9-06 19 47984043 47984043 G A KPTN Silent p.F191F 0.08 TCGA-GF-A6C9-06 19 48643238 48643238 G A LIG1 Silent p.A359A 0.12 TCGA-GF-A6C9-06 19 48646831 48646831 T C LIG1 Missense_Mutation p.T295A 0.12 deleterious(0.04) benign(0.229) TCGA-GF-A6C9-06 19 48646833 48646833 C T LIG1 Missense_Mutation p.R294Q 0.12 tolerated(0.05) possibly_damaging(0.859) TCGA-GF-A6C9-06 19 48660350 48660350 T A LIG1 Silent p.T97T 0.15 TCGA-GF-A6C9-06 19 49012224 49012224 C T LMTK3 Silent p.V176V 0.17 TCGA-GF-A6C9-06 19 4902703 4902703 C T ARRDC5 Silent p.V59V 0.08 TCGA-GF-A6C9-06 19 49090503 49090503 G A SULT2B1 Missense_Mutation p.E78K 0.22 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 19 49166724 49166724 G A NTN5 Silent p.D367D 0.16 TCGA-GF-A6C9-06 19 49224068 49224068 G A RASIP1 Missense_Mutation p.A960V 0.09 tolerated_low_confidence(0.06) benign(0.039) TCGA-GF-A6C9-06 19 49261257 49261257 C G FGF21 Missense_Mutation p.S137C 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 49261258 49261258 C T FGF21 Silent p.S137S 0.14 TCGA-GF-A6C9-06 19 4929269 4929269 C T MIR4747 5'Flank 0.11 TCGA-GF-A6C9-06 19 49341346 49341346 G A PLEKHA4 Missense_Mutation p.H669Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-GF-A6C9-06 19 49398326 49398326 G A TULP2 Missense_Mutation p.S148F 0.20 tolerated(0.06) benign(0.002) TCGA-GF-A6C9-06 19 49425616 49425616 G A NUCB1 Missense_Mutation p.V441M 0.07 tolerated_low_confidence(0.11) benign(0.153) TCGA-GF-A6C9-06 19 49464300 49464300 C T BAX Silent p.L201L 0.19 TCGA-GF-A6C9-06 19 49538906 49538906 G A CGB1 Silent p.P143P 0.15 TCGA-GF-A6C9-06 19 49574130 49574130 G A KCNA7 Silent p.P187P 0.17 TCGA-GF-A6C9-06 19 49913016 49913016 G A CCDC155 Missense_Mutation p.E385K 0.24 tolerated(0.14) benign(0.071) TCGA-GF-A6C9-06 19 50155897 50155897 C T SCAF1 Missense_Mutation p.R751W 0.38 unknown(0) TCGA-GF-A6C9-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.16 TCGA-GF-A6C9-06 19 50208263 50208263 G A CPT1C Splice_Site p.X258_splice 0.21 TCGA-GF-A6C9-06 19 50209533 50209533 G A CPT1C Silent p.A402A 0.29 TCGA-GF-A6C9-06 19 50984165 50984165 G A EMC10 Silent p.E203E 0.15 TCGA-GF-A6C9-06 19 51021659 51021659 C T LRRC4B Missense_Mutation p.M437I 0.24 tolerated(0.09) benign(0.046) TCGA-GF-A6C9-06 19 51361366 51361366 C T KLK3 Silent p.F96F 0.12 TCGA-GF-A6C9-06 19 51378066 51378066 G T KLK2 Nonsense_Mutation p.G46* 0.17 TCGA-GF-A6C9-06 19 51462492 51462492 C A KLK6 Missense_Mutation p.K221N 0.09 deleterious(0) possibly_damaging(0.74) TCGA-GF-A6C9-06 19 51518161 51518161 G A KLK10 Silent p.I242I 0.08 TCGA-GF-A6C9-06 19 51581177 51581177 G A KLK14 3'UTR 0.30 TCGA-GF-A6C9-06 19 51649300 51649300 G A SIGLEC7 Missense_Mutation p.E317K 0.09 tolerated(0.15) possibly_damaging(0.615) TCGA-GF-A6C9-06 19 51671009 51671009 C T CTD-3187F8.14 Intron 0.12 TCGA-GF-A6C9-06 19 51875762 51875762 G A NKG7 Silent p.L10L 0.10 TCGA-GF-A6C9-06 19 51883792 51883792 C T LIM2 Missense_Mutation p.G185S 0.13 deleterious(0.02) possibly_damaging(0.652) TCGA-GF-A6C9-06 19 51914350 51914350 C T SIGLEC10 3'UTR 0.18 TCGA-GF-A6C9-06 19 51918217 51918217 G A SIGLEC10 Silent p.F492F 0.13 TCGA-GF-A6C9-06 19 51961684 51961684 C T SIGLEC8 5'UTR 0.27 TCGA-GF-A6C9-06 19 51983821 51983821 G A CEACAM18 Missense_Mutation p.R157K 0.08 tolerated(0.91) benign(0.014) TCGA-GF-A6C9-06 19 52220399 52220399 G A HAS1 Silent p.L250L 0.10 TCGA-GF-A6C9-06 19 52249190 52249190 C T FPR1 3'UTR 0.11 TCGA-GF-A6C9-06 19 5244194 5244196 GCG CA PTPRS Frame_Shift_Del p.A429Vfs*15 0.11 TCGA-GF-A6C9-06 19 52619363 52619363 G A ZNF616 Missense_Mutation p.P352S 0.16 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 19 52918723 52918723 C T ZNF528 Silent p.I206I 0.15 TCGA-GF-A6C9-06 19 52941503 52941503 C T ZNF534 Missense_Mutation p.H277Y 0.20 deleterious(0) possibly_damaging(0.895) TCGA-GF-A6C9-06 19 53304079 53304079 G A ZNF28 Missense_Mutation p.S340L 0.11 deleterious(0.01) possibly_damaging(0.879) TCGA-GF-A6C9-06 19 53473201 53473201 G A ZNF702P RNA 0.17 TCGA-GF-A6C9-06 19 53669558 53669558 C T ZNF665 Missense_Mutation p.G62E 0.06 tolerated(0.72) benign(0.006) TCGA-GF-A6C9-06 19 53669559 53669559 C T ZNF665 Missense_Mutation p.G62R 0.06 tolerated(0.12) benign(0.006) TCGA-GF-A6C9-06 19 53740875 53740875 G A ZNF677 Missense_Mutation p.H369Y 0.23 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 19 53770889 53770889 C T VN1R4 Missense_Mutation p.M10I 0.14 tolerated(0.58) benign(0.009) TCGA-GF-A6C9-06 19 53884930 53884930 C T ZNF525 Silent p.F366F 0.20 TCGA-GF-A6C9-06 19 54185456 54185456 G T MIR520F RNA 0.18 TCGA-GF-A6C9-06 19 54185475 54185475 C T MIR520F RNA 0.18 TCGA-GF-A6C9-06 19 54297215 54297215 G A NLRP12 3'UTR 0.27 TCGA-GF-A6C9-06 19 54327202 54327202 G A NLRP12 Missense_Mutation p.T76I 0.06 tolerated(1) benign(0.005) TCGA-GF-A6C9-06 19 54395784 54395784 G A PRKCG Silent p.V236V 0.17 TCGA-GF-A6C9-06 19 54403937 54403937 G A PRKCG Silent p.K503K 0.15 TCGA-GF-A6C9-06 19 54515445 54515445 G A CACNG6 3'UTR 0.17 TCGA-GF-A6C9-06 19 54554694 54554694 C T VSTM1 Missense_Mutation p.D122N 0.21 tolerated(0.44) benign(0.001) TCGA-GF-A6C9-06 19 54783475 54783475 G A LILRB2 Missense_Mutation p.A128V 0.16 tolerated(0.06) possibly_damaging(0.808) TCGA-GF-A6C9-06 19 54800034 54800034 G A LILRA3 3'UTR 0.18 TCGA-GF-A6C9-06 19 54867598 54867598 C T LAIR1 Missense_Mutation p.G228R 0.09 tolerated(1) probably_damaging(0.996) TCGA-GF-A6C9-06 19 55021820 55021820 G A LAIR2 3'UTR 0.14 TCGA-GF-A6C9-06 19 55047029 55047029 G A KIR3DX1 Missense_Mutation p.A192T 0.21 tolerated(1) benign(0.024) TCGA-GF-A6C9-06 19 55144082 55144082 C T LILRB1 Missense_Mutation p.L277F 0.12 deleterious(0.03) benign(0.068) TCGA-GF-A6C9-06 19 55147900 55147900 G A AC009892.10 Intron 0.18 TCGA-GF-A6C9-06 19 55175402 55175402 C T LILRB4 Silent p.S87S 0.08 TCGA-GF-A6C9-06 19 55316316 55316316 C T KIR2DL4 Missense_Mutation p.L49F 0.12 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 19 55340886 55340886 C T KIR3DL1 Silent p.F357F 0.16 TCGA-GF-A6C9-06 19 55349326 55349326 C T KIR2DS4 Silent p.I122I 0.15 TCGA-GF-A6C9-06 19 55351072 55351072 G A KIR2DS4 Missense_Mutation p.G187E 0.16 tolerated_low_confidence(0.12) possibly_damaging(0.703) TCGA-GF-A6C9-06 19 55399627 55399627 C T FCAR Silent p.S205S 0.14 TCGA-GF-A6C9-06 19 55420755 55420755 G A NCR1 Silent p.G169G 0.16 TCGA-GF-A6C9-06 19 55505754 55505754 G A NLRP2 Missense_Mutation p.M942I 0.17 tolerated(0.19) benign(0.005) TCGA-GF-A6C9-06 19 55512269 55512269 C T NLRP2 3'UTR 0.11 TCGA-GF-A6C9-06 19 55805700 55805700 G A BRSK1 Missense_Mutation p.E205K 0.13 deleterious(0.04) possibly_damaging(0.621) TCGA-GF-A6C9-06 19 55865857 55865857 C T COX6B2 Silent p.K11K 0.08 TCGA-GF-A6C9-06 19 56041190 56041190 G A SBK2 Silent p.I319I 0.21 TCGA-GF-A6C9-06 19 56104194 56104194 G A FIZ1 Silent p.A371A 0.21 TCGA-GF-A6C9-06 19 56104195 56104195 G A FIZ1 Missense_Mutation p.A371V 0.21 tolerated(0.44) possibly_damaging(0.892) TCGA-GF-A6C9-06 19 56243721 56243721 C T NLRP9 Silent p.G492G 0.12 TCGA-GF-A6C9-06 19 56244544 56244544 G A NLRP9 Missense_Mutation p.S218F 0.11 deleterious(0.03) probably_damaging(0.975) TCGA-GF-A6C9-06 19 56244683 56244683 C T NLRP9 Missense_Mutation p.G172R 0.11 deleterious(0.04) probably_damaging(1) TCGA-GF-A6C9-06 19 56370434 56370434 G A NLRP4 Missense_Mutation p.E559K 0.22 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 19 56410191 56410191 C T NLRP13 Missense_Mutation p.G968R 0.10 deleterious(0) possibly_damaging(0.874) TCGA-GF-A6C9-06 19 56410268 56410268 C T NLRP13 Missense_Mutation p.G942E 0.08 tolerated(0.51) benign(0.09) TCGA-GF-A6C9-06 19 56423185 56423185 C T NLRP13 Silent p.L666L 0.09 TCGA-GF-A6C9-06 19 56424120 56424120 G A NLRP13 Missense_Mutation p.P355S 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 19 56424543 56424543 C T NLRP13 Missense_Mutation p.E214K 0.18 tolerated(0.21) possibly_damaging(0.815) TCGA-GF-A6C9-06 19 56435994 56435994 G A NLRP13 Missense_Mutation p.P140L 0.11 deleterious(0) benign(0.045) TCGA-GF-A6C9-06 19 56466546 56466546 G A NLRP8 Silent p.E374E 0.16 TCGA-GF-A6C9-06 19 56466719 56466719 C T NLRP8 Missense_Mutation p.S432F 0.10 deleterious(0) probably_damaging(0.972) TCGA-GF-A6C9-06 19 56466730 56466730 C T NLRP8 Missense_Mutation p.P436S 0.12 tolerated(0.29) possibly_damaging(0.622) TCGA-GF-A6C9-06 19 56473506 56473506 G A NLRP8 Missense_Mutation p.E706K 0.11 tolerated(0.19) possibly_damaging(0.877) TCGA-GF-A6C9-06 19 56702279 56702279 C T ZSCAN5B Silent p.E222E 0.14 TCGA-GF-A6C9-06 19 57089892 57089892 C T ZNF470 Missense_Mutation p.H699Y 0.12 deleterious(0) probably_damaging(0.923) TCGA-GF-A6C9-06 19 57133965 57133965 C T ZNF71 Missense_Mutation p.P437L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 19 57333108 57333108 C T PEG3 Missense_Mutation p.D194N 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-GF-A6C9-06 19 57641013 57641013 C T USP29 Missense_Mutation p.P324S 0.19 tolerated(0.15) probably_damaging(1) TCGA-GF-A6C9-06 19 57723297 57723297 C T ZNF264 Nonsense_Mutation p.Q278* 0.08 TCGA-GF-A6C9-06 19 58118563 58118563 C T ZNF530 Missense_Mutation p.T557I 0.10 tolerated(0.11) benign(0.033) TCGA-GF-A6C9-06 19 5843553 5843553 G A FUT3 3'UTR 0.25 TCGA-GF-A6C9-06 19 58772997 58772997 C T ZNF544 Missense_Mutation p.S342F 0.11 tolerated(0.27) benign(0.227) TCGA-GF-A6C9-06 19 603796 603796 C T HCN2 Silent p.F295F 0.12 TCGA-GF-A6C9-06 19 613253 613253 C T HCN2 Silent p.I530I 0.13 TCGA-GF-A6C9-06 19 614007 614007 G A HCN2 Missense_Mutation p.D661N 0.19 tolerated(0.16) benign(0.02) TCGA-GF-A6C9-06 19 6147624 6147624 G A ACSBG2 Missense_Mutation p.E79K 0.17 tolerated(0.43) benign(0.01) TCGA-GF-A6C9-06 19 6496110 6496110 G A TUBB4A Nonsense_Mutation p.Q134* 0.13 TCGA-GF-A6C9-06 19 6664984 6664984 G A TNFSF14 Nonsense_Mutation p.R226* 0.09 TCGA-GF-A6C9-06 19 6665265 6665265 G A TNFSF14 Missense_Mutation p.A132V 0.18 tolerated(0.07) benign(0.394) TCGA-GF-A6C9-06 19 6913826 6913826 C T EMR1 Missense_Mutation p.R429W 0.09 deleterious(0.01) possibly_damaging(0.776) TCGA-GF-A6C9-06 19 6926418 6926418 C T EMR1 Silent p.F676F 0.14 TCGA-GF-A6C9-06 19 7117018 7117018 G A INSR 3'UTR 0.18 TCGA-GF-A6C9-06 19 7676019 7676019 C T CAMSAP3 Missense_Mutation p.S390F 0.12 tolerated(0.71) benign(0.213) TCGA-GF-A6C9-06 19 7743114 7743114 C T C19orf59 Silent p.F103F 0.16 TCGA-GF-A6C9-06 19 7812337 7812337 C T CD209 Intron 0.15 TCGA-GF-A6C9-06 19 8148155 8148155 C T FBN3 Missense_Mutation p.D2397N 0.17 deleterious(0.03) benign(0.424) TCGA-GF-A6C9-06 19 828343 828343 C T AZU1 Missense_Mutation p.H58Y 0.12 tolerated(0.06) probably_damaging(0.99) TCGA-GF-A6C9-06 19 8564173 8564173 G A PRAM1 Silent p.L173L 0.14 TCGA-GF-A6C9-06 19 8618320 8618320 C T MYO1F Missense_Mutation p.G110R 0.17 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 19 8841798 8841798 G A OR2Z1 Missense_Mutation p.M136I 0.12 deleterious(0) probably_damaging(0.985) TCGA-GF-A6C9-06 19 8999499 8999499 C T MUC16 Missense_Mutation p.S13559N 0.15 possibly_damaging(0.805) TCGA-GF-A6C9-06 19 9014198 9014198 G A MUC16 Missense_Mutation p.T12817I 0.10 probably_damaging(0.975) TCGA-GF-A6C9-06 19 9046789 9046789 C T MUC16 Silent p.T11614T 0.12 TCGA-GF-A6C9-06 19 9047124 9047124 G A MUC16 Missense_Mutation p.P11503S 0.14 benign(0) TCGA-GF-A6C9-06 19 9048113 9048113 G A MUC16 Missense_Mutation p.S11173F 0.12 benign(0.027) TCGA-GF-A6C9-06 19 9049971 9049971 G A MUC16 Missense_Mutation p.P10554S 0.20 possibly_damaging(0.803) TCGA-GF-A6C9-06 19 9059696 9059696 G A MUC16 Silent p.A9250A 0.10 TCGA-GF-A6C9-06 19 9059697 9059697 G A MUC16 Missense_Mutation p.A9250V 0.09 unknown(0) TCGA-GF-A6C9-06 19 9063570 9063570 C T MUC16 Nonsense_Mutation p.W7959* 0.21 TCGA-GF-A6C9-06 19 9063956 9063956 G A MUC16 Silent p.T7830T 0.14 TCGA-GF-A6C9-06 19 9064483 9064483 G A MUC16 Nonsense_Mutation p.Q7655* 0.24 TCGA-GF-A6C9-06 19 9070231 9070231 C T MUC16 Missense_Mutation p.D5739N 0.13 unknown(0) TCGA-GF-A6C9-06 19 9070955 9070955 C T MUC16 Silent p.K5497K 0.10 TCGA-GF-A6C9-06 19 9074625 9074625 G A MUC16 Missense_Mutation p.P4274L 0.08 unknown(0) TCGA-GF-A6C9-06 19 9076269 9076269 G A MUC16 Missense_Mutation p.S3726F 0.17 unknown(0) TCGA-GF-A6C9-06 19 9083098 9083098 G A MUC16 Missense_Mutation p.S2906F 0.09 unknown(0) TCGA-GF-A6C9-06 19 9085846 9085846 A T MUC16 Missense_Mutation p.V1990D 0.17 unknown(0) TCGA-GF-A6C9-06 19 9087601 9087601 G A MUC16 Missense_Mutation p.S1405L 0.13 unknown(0) TCGA-GF-A6C9-06 19 9088159 9088159 G A MUC16 Missense_Mutation p.P1219L 0.17 unknown(0) TCGA-GF-A6C9-06 19 9089035 9089035 G A MUC16 Missense_Mutation p.S927L 0.19 unknown(0) TCGA-GF-A6C9-06 19 9091661 9091661 C T MUC16 Missense_Mutation p.E52K 0.22 unknown(0) TCGA-GF-A6C9-06 19 9204811 9204811 G A OR1M1 Silent p.L297L 0.17 TCGA-GF-A6C9-06 19 9213059 9213059 G A OR7G2 Silent p.P308P 0.10 TCGA-GF-A6C9-06 19 9213183 9213183 G A OR7G2 Missense_Mutation p.S267F 0.12 deleterious(0.01) benign(0.303) TCGA-GF-A6C9-06 19 9362521 9362521 T C OR7E24 Silent p.L268L 0.11 TCGA-GF-A6C9-06 19 9453788 9453788 C T ZNF559 3'UTR 0.08 TCGA-GF-A6C9-06 19 9577548 9577548 G A ZNF560 Missense_Mutation p.S692F 0.16 tolerated(0.21) possibly_damaging(0.831) TCGA-GF-A6C9-06 19 9875701 9875701 G A ZNF846 5'UTR 0.15 TCGA-GF-A6C9-06 1 101186081 101186081 G A VCAM1 Silent p.Q38Q 0.21 TCGA-GF-A6C9-06 1 103431072 103431072 G A COL11A1 Missense_Mutation p.P963S 0.12 unknown(0) TCGA-GF-A6C9-06 1 104115787 104115787 G A AMY2B Missense_Mutation p.D140N 0.12 tolerated(0.19) benign(0.006) TCGA-GF-A6C9-06 1 104116472 104116472 C T AMY2B Missense_Mutation p.P219L 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 104118101 104118101 C T AMY2B Missense_Mutation p.P347L 0.05 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 104120149 104120149 G A AMY2B Missense_Mutation p.G380E 0.05 tolerated(0.13) probably_damaging(0.998) TCGA-GF-A6C9-06 1 104160214 104160214 G A AMY2A Missense_Mutation p.G51E 0.11 deleterious(0) probably_damaging(0.983) TCGA-GF-A6C9-06 1 104297119 104297119 A T AMY1C Splice_Site p.X293_splice 0.08 TCGA-GF-A6C9-06 1 10720081 10720081 C T CASZ1 Missense_Mutation p.D340N 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GF-A6C9-06 1 10720494 10720494 C T CASZ1 Missense_Mutation p.R202K 0.24 tolerated_low_confidence(0.79) benign(0.005) TCGA-GF-A6C9-06 1 108152553 108152553 C T VAV3 Nonsense_Mutation p.W672* 0.11 TCGA-GF-A6C9-06 1 108507321 108507321 C T VAV3 Silent p.L57L 0.22 TCGA-GF-A6C9-06 1 109859567 109859567 G A SORT1 Missense_Mutation p.P719S 0.23 deleterious(0) possibly_damaging(0.893) TCGA-GF-A6C9-06 1 110050048 110050048 C T AMIGO1 3'UTR 0.18 TCGA-GF-A6C9-06 1 11014171 11014171 C T C1orf127 Missense_Mutation p.G335E 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-GF-A6C9-06 1 110149038 110149038 C T GNAT2 Missense_Mutation p.R161Q 0.16 deleterious(0.01) benign(0.111) TCGA-GF-A6C9-06 1 110168320 110168320 C T AMPD2 Missense_Mutation p.R141C 0.13 deleterious(0) probably_damaging(0.91) TCGA-GF-A6C9-06 1 110170075 110170075 C T AMPD2 Silent p.Y349Y 0.19 TCGA-GF-A6C9-06 1 110754401 110754401 T C KCNC4 Missense_Mutation p.F94L 0.14 deleterious(0.02) benign(0.04) TCGA-GF-A6C9-06 1 111215758 111215758 C T KCNA3 Silent p.T558T 0.21 TCGA-GF-A6C9-06 1 111215820 111215820 T C KCNA3 Missense_Mutation p.N538D 0.19 tolerated_low_confidence(0.2) benign(0.008) TCGA-GF-A6C9-06 1 111778752 111778752 G A CHI3L2 Missense_Mutation p.G238R 0.17 tolerated(0.05) benign(0.008) TCGA-GF-A6C9-06 1 11186741 11186741 G A MTOR Missense_Mutation p.S2155F 0.16 tolerated(0.05) benign(0.271) TCGA-GF-A6C9-06 1 112270121 112270123 CCT TC FAM212B Frame_Shift_Del p.R121Efs*25 0.18 TCGA-GF-A6C9-06 1 112524770 112524770 G A KCND3 Silent p.I193I 0.16 TCGA-GF-A6C9-06 1 112958883 112958883 A T CTTNBP2NL Missense_Mutation p.L32F 0.18 deleterious(0) possibly_damaging(0.661) TCGA-GF-A6C9-06 1 11317192 11317192 G A MTOR Missense_Mutation p.A101V 0.30 deleterious(0.04) possibly_damaging(0.477) TCGA-GF-A6C9-06 1 114215982 114215982 C T MAGI3 Silent p.P1028P 0.06 TCGA-GF-A6C9-06 1 114240331 114240331 G A PHTF1 Missense_Mutation p.S762L 0.17 deleterious_low_confidence(0) benign(0.03) TCGA-GF-A6C9-06 1 114243463 114243463 C T PHTF1 Missense_Mutation p.E667K 0.17 tolerated(0.17) possibly_damaging(0.883) TCGA-GF-A6C9-06 1 114267420 114267420 G A PHTF1 Missense_Mutation p.P195L 0.17 tolerated(0.1) benign(0.021) TCGA-GF-A6C9-06 1 115144187 115144187 C T DENND2C Missense_Mutation p.R586Q 0.23 deleterious(0.01) benign(0.114) TCGA-GF-A6C9-06 1 115216657 115216657 G A AMPD1 Missense_Mutation p.A649V 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 115222318 115222318 G A AMPD1 Missense_Mutation p.T293I 0.15 deleterious(0) benign(0.183) TCGA-GF-A6C9-06 1 115223035 115223035 C T AMPD1 Silent p.L237L 0.19 TCGA-GF-A6C9-06 1 115258669 115258669 A G NRAS Splice_Site p.X37_splice 0.19 TCGA-GF-A6C9-06 1 115398061 115398061 G A SYCP1 Splice_Site 0.11 TCGA-GF-A6C9-06 1 115455667 115455667 G A SYCP1 Missense_Mutation p.E515K 0.23 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 1 115828984 115828984 C T NGF Missense_Mutation p.D145N 0.20 tolerated(0.65) benign(0.059) TCGA-GF-A6C9-06 1 116935538 116935538 T C ATP1A1 Silent p.G465G 0.26 TCGA-GF-A6C9-06 1 117156629 117156629 G A IGSF3 Missense_Mutation p.S197F 0.06 deleterious(0) possibly_damaging(0.781) TCGA-GF-A6C9-06 1 117561029 117561029 C T CD101 Missense_Mutation p.R622C 0.26 tolerated(0.19) benign(0.022) TCGA-GF-A6C9-06 1 118166421 118166421 C T FAM46C Missense_Mutation p.R311C 0.25 deleterious(0) possibly_damaging(0.873) TCGA-GF-A6C9-06 1 118426141 118426141 G A GDAP2 Silent p.L406L 0.17 TCGA-GF-A6C9-06 1 118657993 118657993 C T SPAG17 Silent p.L129L 0.10 TCGA-GF-A6C9-06 1 11897114 11897114 C T CLCN6 Missense_Mutation p.S680F 0.18 deleterious(0.02) probably_damaging(0.931) TCGA-GF-A6C9-06 1 1190811 1190811 G A UBE2J2 Silent p.L200L 0.10 TCGA-GF-A6C9-06 1 119427891 119427891 G A TBX15 Nonsense_Mutation p.Q319* 0.18 TCGA-GF-A6C9-06 1 119466136 119466136 G A TBX15 Missense_Mutation p.P156S 0.13 deleterious(0.04) benign(0.012) TCGA-GF-A6C9-06 1 119927556 119927556 C T HAO2 Silent p.S147S 0.20 TCGA-GF-A6C9-06 1 119964653 119964653 G A HSD3B2 Missense_Mutation p.D177N 0.09 deleterious(0.04) benign(0.003) TCGA-GF-A6C9-06 1 119964707 119964707 C T HSD3B2 Missense_Mutation p.P195S 0.24 tolerated(0.08) benign(0.014) TCGA-GF-A6C9-06 1 120437145 120437145 C T ADAM30 Missense_Mutation p.M605I 0.07 tolerated(0.17) benign(0.043) TCGA-GF-A6C9-06 1 120459206 120459206 G A NOTCH2 Missense_Mutation p.R2047W 0.12 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 1 120459207 120459207 G A NOTCH2 Silent p.P2046P 0.12 TCGA-GF-A6C9-06 1 120466292 120466292 G A NOTCH2 Silent p.S1609S 0.21 TCGA-GF-A6C9-06 1 120483292 120483292 G A NOTCH2 Silent p.L1023L 0.27 TCGA-GF-A6C9-06 1 120512204 120512204 G A NOTCH2 Silent p.S346S 0.12 TCGA-GF-A6C9-06 1 1256442 1256442 G A CPSF3L Silent p.I26I 0.21 TCGA-GF-A6C9-06 1 12639390 12639390 C T DHRS3 Silent p.K130K 0.18 TCGA-GF-A6C9-06 1 12785516 12785516 C T AADACL3 Silent p.F202F 0.19 TCGA-GF-A6C9-06 1 12785810 12785810 G A AADACL3 Silent p.K300K 0.09 TCGA-GF-A6C9-06 1 12836232 12836232 C T PRAMEF12 Silent p.F278F 0.21 TCGA-GF-A6C9-06 1 12854297 12854297 G A PRAMEF1 Missense_Mutation p.R174K 0.11 tolerated(0.07) probably_damaging(0.987) TCGA-GF-A6C9-06 1 12888432 12888432 T A PRAMEF11 Missense_Mutation p.K31M 0.14 deleterious(0.02) benign(0.319) TCGA-GF-A6C9-06 1 12921701 12921701 A T PRAMEF2 3'UTR 0.14 TCGA-GF-A6C9-06 1 12939742 12939742 G A PRAMEF4 Missense_Mutation p.L354F 0.05 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 12952812 12952812 G A PRAMEF10 Missense_Mutation p.P454S 0.27 tolerated(0.68) benign(0.143) TCGA-GF-A6C9-06 1 13036565 13036565 G A PRAMEF22 Missense_Mutation p.E213K 0.14 deleterious(0.04) possibly_damaging(0.686) TCGA-GF-A6C9-06 1 13496002 13496002 T C PRAMEF16 Missense_Mutation p.V108A 0.35 tolerated(0.42) probably_damaging(0.98) TCGA-GF-A6C9-06 1 13718437 13718437 C T PRAMEF17 Silent p.F300F 0.47 TCGA-GF-A6C9-06 1 13743021 13743021 G A PRAMEF20 Missense_Mutation p.M70I 0.12 tolerated(0.17) benign(0.003) TCGA-GF-A6C9-06 1 1374462 1374462 C G VWA1 Missense_Mutation p.D211E 0.13 tolerated(1) benign(0.002) TCGA-GF-A6C9-06 1 1391688 1391688 C T ATAD3C Silent p.A216A 0.21 TCGA-GF-A6C9-06 1 142713783 142713783 T A RP11-417J8.6 RNA 0.19 TCGA-GF-A6C9-06 1 146684032 146684032 T G FMO5 Silent p.R187R 0.16 TCGA-GF-A6C9-06 1 147131119 147131119 G A ACP6 Missense_Mutation p.S172F 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 147230322 147230322 C T GJA5 Missense_Mutation p.R342Q 0.08 deleterious(0.02) unknown(0) TCGA-GF-A6C9-06 1 149885088 149885088 G A SV2A Missense_Mutation p.P102L 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 150939604 150939604 G A CERS2 Silent p.I229I 0.10 TCGA-GF-A6C9-06 1 151491771 151491771 C T CGN Missense_Mutation p.P259L 0.08 deleterious(0.04) benign(0.009) TCGA-GF-A6C9-06 1 151789714 151789714 G A RORC Missense_Mutation p.S38L 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 152081232 152081232 G A TCHH Silent p.F1487F 0.09 TCGA-GF-A6C9-06 1 152081946 152081946 C T TCHH Silent p.Q1249Q 0.11 TCGA-GF-A6C9-06 1 152128515 152128515 G A RPTN Missense_Mutation p.H354Y 0.18 deleterious(0) benign(0.058) TCGA-GF-A6C9-06 1 152128841 152128841 C T RPTN Missense_Mutation p.R245K 0.12 tolerated(0.21) benign(0.013) TCGA-GF-A6C9-06 1 152188430 152188430 C T HRNR Missense_Mutation p.G1892D 0.07 unknown(0) TCGA-GF-A6C9-06 1 152190933 152190933 C T HRNR Missense_Mutation p.G1058R 0.11 unknown(0) TCGA-GF-A6C9-06 1 152277829 152277829 G A FLG Missense_Mutation p.S3178L 0.10 unknown(0) TCGA-GF-A6C9-06 1 152284311 152284311 C T FLG Silent p.Q1017Q 0.19 TCGA-GF-A6C9-06 1 152286458 152286458 C T FLG Missense_Mutation p.D302N 0.19 probably_damaging(0.958) TCGA-GF-A6C9-06 1 152733682 152733682 G A KPRP Missense_Mutation p.E540K 0.15 tolerated_low_confidence(0.06) benign(0) TCGA-GF-A6C9-06 1 152770310 152770310 C T LCE1D Missense_Mutation p.P14S 0.33 unknown(0) TCGA-GF-A6C9-06 1 153122426 153122426 T A SPRR2G Missense_Mutation p.K54I 0.22 unknown(0) TCGA-GF-A6C9-06 1 154310199 154310199 C T ATP8B2 Intron 0.20 TCGA-GF-A6C9-06 1 154320959 154320959 C T ATP8B2 Missense_Mutation p.P1113L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 1 155026977 155026977 C T ADAM15 Missense_Mutation p.R203C 0.15 deleterious(0) possibly_damaging(0.582) TCGA-GF-A6C9-06 1 155159934 155159934 G A MUC1 Silent p.A400A 0.12 TCGA-GF-A6C9-06 1 155319381 155319381 G A ASH1L Missense_Mutation p.S2458F 0.21 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-GF-A6C9-06 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GF-A6C9-06 1 1558801 1558801 C T MIB2 Missense_Mutation p.S105F 0.19 deleterious_low_confidence(0.03) benign(0.206) TCGA-GF-A6C9-06 1 156626166 156626166 G A BCAN Missense_Mutation p.D679N 0.08 tolerated(0.1) benign(0.032) TCGA-GF-A6C9-06 1 156837963 156837963 G A NTRK1 Missense_Mutation p.G166R 0.22 deleterious(0.03) possibly_damaging(0.75) TCGA-GF-A6C9-06 1 156918259 156918259 C T ARHGEF11 Missense_Mutation p.E653K 0.11 tolerated(0.07) possibly_damaging(0.759) TCGA-GF-A6C9-06 1 157516851 157516851 C T FCRL5 Silent p.G63G 0.09 TCGA-GF-A6C9-06 1 157516931 157516931 C T FCRL5 Missense_Mutation p.G37R 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 157667021 157667021 C T FCRL3 Nonsense_Mutation p.W251* 0.11 TCGA-GF-A6C9-06 1 15770004 15770004 C T CTRC Silent p.L149L 0.13 TCGA-GF-A6C9-06 1 157773657 157773657 C T FCRL1 Silent p.R99R 0.14 TCGA-GF-A6C9-06 1 158154004 158154004 C T CD1D 3'UTR 0.13 TCGA-GF-A6C9-06 1 158262019 158262019 G A CD1C Silent p.L158L 0.12 TCGA-GF-A6C9-06 1 158262110 158262110 C T CD1C Missense_Mutation p.L189F 0.08 deleterious(0.02) benign(0.244) TCGA-GF-A6C9-06 1 158517797 158517797 G A OR6Y1 Silent p.F33F 0.26 TCGA-GF-A6C9-06 1 158548734 158548734 C T OR10X1 Missense_Mutation p.G319E 0.09 deleterious(0.04) benign(0.01) TCGA-GF-A6C9-06 1 158582688 158582688 G A SPTA1 Silent p.I2351I 0.17 TCGA-GF-A6C9-06 1 158582715 158582715 G A SPTA1 Silent p.F2342F 0.17 TCGA-GF-A6C9-06 1 158606494 158606494 C T SPTA1 Silent p.Q1749Q 0.18 TCGA-GF-A6C9-06 1 158614069 158614069 C T SPTA1 Missense_Mutation p.D1438N 0.09 tolerated(0.06) probably_damaging(0.92) TCGA-GF-A6C9-06 1 158632707 158632707 G A SPTA1 Missense_Mutation p.A750V 0.21 tolerated(0.08) benign(0.143) TCGA-GF-A6C9-06 1 158637647 158637647 C T SPTA1 Splice_Site p.X680_splice 0.16 TCGA-GF-A6C9-06 1 158817640 158817640 C T MNDA Silent p.F370F 0.12 TCGA-GF-A6C9-06 1 159275794 159275794 G A FCER1A Silent p.Q116Q 0.22 TCGA-GF-A6C9-06 1 159799774 159799774 C T SLAMF8 Silent p.L53L 0.08 TCGA-GF-A6C9-06 1 159804975 159804975 G A SLAMF8 Silent p.G261G 0.17 TCGA-GF-A6C9-06 1 160012200 160012200 C T KCNJ10 Missense_Mutation p.M41I 0.12 tolerated(0.67) benign(0.004) TCGA-GF-A6C9-06 1 160145912 160145912 C T ATP1A4 Missense_Mutation p.S781F 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 160718047 160718047 C T SLAMF7 Missense_Mutation p.P40L 0.10 deleterious(0) probably_damaging(0.977) TCGA-GF-A6C9-06 1 16091592 16091592 G A FBLIM1 Silent p.R38R 0.23 TCGA-GF-A6C9-06 1 160969738 160969738 C T F11R Missense_Mutation p.G208R 0.10 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 1 16103737 16103737 C T FBLIM1 3'Flank 0.23 TCGA-GF-A6C9-06 1 161161178 161161178 C T ADAMTS4 Missense_Mutation p.G755E 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-GF-A6C9-06 1 16202912 16202912 A G SPEN Missense_Mutation p.E207G 0.20 probably_damaging(0.993) TCGA-GF-A6C9-06 1 162345159 162345159 G A C1orf111 Silent p.S46S 0.16 TCGA-GF-A6C9-06 1 16258596 16258596 C T SPEN Missense_Mutation p.P1954L 0.15 probably_damaging(0.999) TCGA-GF-A6C9-06 1 16261757 16261757 C T SPEN Missense_Mutation p.P3008S 0.14 probably_damaging(0.98) TCGA-GF-A6C9-06 1 163044135 163044135 G A RGS4 Missense_Mutation p.E232K 0.14 deleterious(0) possibly_damaging(0.631) TCGA-GF-A6C9-06 1 16458685 16458685 C T EPHA2 Missense_Mutation p.M733I 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-GF-A6C9-06 1 165175186 165175186 G A LMX1A Silent p.A301A 0.19 TCGA-GF-A6C9-06 1 165183001 165183001 C T LMX1A Silent p.G182G 0.08 TCGA-GF-A6C9-06 1 166973433 166973433 G A MAEL Silent p.K180K 0.11 TCGA-GF-A6C9-06 1 166990348 166990348 C T MAEL Silent p.F356F 0.15 TCGA-GF-A6C9-06 1 166990927 166990927 A T MAEL Missense_Mutation p.K380N 0.14 deleterious(0.04) benign(0.007) TCGA-GF-A6C9-06 1 167802322 167802322 G A ADCY10 Missense_Mutation p.P1166S 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 168282156 168282156 G A TBX19 Nonsense_Mutation p.W421* 0.12 TCGA-GF-A6C9-06 1 16890411 16890411 G A NBPF1 3'UTR 0.05 TCGA-GF-A6C9-06 1 169492555 169492555 G A F5 Silent p.I1976I 0.22 TCGA-GF-A6C9-06 1 171154963 171154963 T C FMO2 Silent p.I37I 0.15 TCGA-GF-A6C9-06 1 171174591 171174591 C T FMO2 Missense_Mutation p.S334F 0.08 deleterious(0) possibly_damaging(0.887) TCGA-GF-A6C9-06 1 171621749 171621749 C T MYOC Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) benign(0) TCGA-GF-A6C9-06 1 172357743 172357743 G A DNM3 Silent p.R772R 0.16 TCGA-GF-A6C9-06 1 172558946 172558946 G A SUCO Missense_Mutation p.G902E 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 173010631 173010631 C T TNFSF18 Missense_Mutation p.G159E 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 173155693 173155693 G A TNFSF4 Missense_Mutation p.L172F 0.08 deleterious(0.01) probably_damaging(0.942) TCGA-GF-A6C9-06 1 17322555 17322555 G A ATP13A2 Silent p.S486S 0.24 TCGA-GF-A6C9-06 1 173493947 173493947 C T SLC9C2 Missense_Mutation p.D829N 0.08 tolerated(0.11) possibly_damaging(0.848) TCGA-GF-A6C9-06 1 173503730 173503730 G A SLC9C2 Missense_Mutation p.P623S 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 17395427 17395427 C T PADI2 3'UTR 0.29 TCGA-GF-A6C9-06 1 175046906 175046906 G A TNN Missense_Mutation p.E118K 0.15 deleterious(0) probably_damaging(0.967) TCGA-GF-A6C9-06 1 175066578 175066578 G A TNN Silent p.V538V 0.18 TCGA-GF-A6C9-06 1 175086300 175086300 G A TNN Missense_Mutation p.G782E 0.09 deleterious(0.03) possibly_damaging(0.768) TCGA-GF-A6C9-06 1 175332955 175332955 G A TNR Missense_Mutation p.P866S 0.11 tolerated(0.5) benign(0.34) TCGA-GF-A6C9-06 1 175372732 175372732 G A TNR Missense_Mutation p.H174Y 0.16 tolerated(0.92) benign(0.296) TCGA-GF-A6C9-06 1 175375835 175375835 C T TNR Missense_Mutation p.E6K 0.16 deleterious_low_confidence(0.04) benign(0.069) TCGA-GF-A6C9-06 1 17552625 17552625 C T PADI1 Silent p.S208S 0.22 TCGA-GF-A6C9-06 1 17592200 17592200 G A PADI3 Silent p.R131R 0.07 TCGA-GF-A6C9-06 1 176525925 176525925 C T PAPPA2 Missense_Mutation p.S156F 0.11 tolerated_low_confidence(0.19) benign(0) TCGA-GF-A6C9-06 1 176564272 176564272 C T PAPPA2 Missense_Mutation p.S511F 0.13 tolerated(0.24) possibly_damaging(0.721) TCGA-GF-A6C9-06 1 176668534 176668534 G A PAPPA2 Silent p.G1015G 0.17 TCGA-GF-A6C9-06 1 176675517 176675517 G A PAPPA2 Missense_Mutation p.D1130N 0.16 deleterious(0) possibly_damaging(0.906) TCGA-GF-A6C9-06 1 176845732 176845732 C T ASTN1 Missense_Mutation p.R1135K 0.11 deleterious(0.05) benign(0.034) TCGA-GF-A6C9-06 1 176905401 176905401 C T ASTN1 Splice_Site p.X828_splice 0.14 TCGA-GF-A6C9-06 1 176915202 176915202 C T ASTN1 Silent p.T703T 0.16 TCGA-GF-A6C9-06 1 176984009 176984009 C T ASTN1 Missense_Mutation p.E481K 0.14 tolerated(0.14) benign(0.062) TCGA-GF-A6C9-06 1 17699608 17699608 C T PADI6 RNA 0.18 TCGA-GF-A6C9-06 1 177225235 177225235 C T BRINP2 Silent p.A150A 0.15 TCGA-GF-A6C9-06 1 177249566 177249566 G A BRINP2 Nonsense_Mutation p.W418* 0.10 TCGA-GF-A6C9-06 1 178489983 178489983 C T TEX35 Missense_Mutation p.P173S 0.11 tolerated_low_confidence(1) probably_damaging(0.986) TCGA-GF-A6C9-06 1 179530429 179530429 C T NPHS2 Missense_Mutation p.G149D 0.07 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 179815820 179815820 G A TOR1AIP2 Missense_Mutation p.P267S 0.14 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 1 18149822 18149822 G A ACTL8 Missense_Mutation p.E107K 0.18 deleterious(0.01) benign(0.334) TCGA-GF-A6C9-06 1 181689390 181689390 G A CACNA1E Missense_Mutation p.M600I 0.12 deleterious(0.04) benign(0.072) TCGA-GF-A6C9-06 1 181707532 181707532 G A CACNA1E Silent p.T1194T 0.19 TCGA-GF-A6C9-06 1 181726085 181726085 G A CACNA1E Silent p.V1384V 0.14 TCGA-GF-A6C9-06 1 181767784 181767784 C T CACNA1E Silent p.F2252F 0.19 TCGA-GF-A6C9-06 1 182025598 182025598 G A ZNF648 Silent p.A516A 0.24 TCGA-GF-A6C9-06 1 182357711 182357711 C T GLUL Silent p.V54V 0.13 TCGA-GF-A6C9-06 1 183090914 183090914 C T LAMC1 Missense_Mutation p.P683S 0.10 tolerated(0.08) benign(0.055) TCGA-GF-A6C9-06 1 183111824 183111824 C T LAMC1 Nonsense_Mutation p.R1577* 0.13 TCGA-GF-A6C9-06 1 183529291 183529291 C T NCF2 Missense_Mutation p.A470T 0.21 deleterious(0.05) probably_damaging(0.938) TCGA-GF-A6C9-06 1 1849187 1849187 G A TMEM52 3'UTR 0.36 TCGA-GF-A6C9-06 1 186043904 186043907 CTGC TTG HMCN1 Frame_Shift_Del p.A2724Vfs*9 0.09 TCGA-GF-A6C9-06 1 186281401 186281401 G A PRG4 Silent p.T1296T 0.16 TCGA-GF-A6C9-06 1 186281883 186281883 T C TPR 3'UTR 0.17 TCGA-GF-A6C9-06 1 18692085 18692085 C T IGSF21 Silent p.A303A 0.20 TCGA-GF-A6C9-06 1 190067619 190067619 C T BRINP3 Nonsense_Mutation p.W610* 0.18 TCGA-GF-A6C9-06 1 19442124 19442124 G A UBR4 Missense_Mutation p.R3611C 0.21 probably_damaging(0.973) TCGA-GF-A6C9-06 1 19467928 19467928 G A UBR4 Missense_Mutation p.P2801S 0.15 probably_damaging(0.961) TCGA-GF-A6C9-06 1 19610530 19610530 G A AKR7A3 Missense_Mutation p.S265L 0.21 deleterious(0.01) possibly_damaging(0.698) TCGA-GF-A6C9-06 1 196395070 196395070 G A KCNT2 Nonsense_Mutation p.R345* 0.20 TCGA-GF-A6C9-06 1 196398791 196398791 G A KCNT2 Silent p.F245F 0.16 TCGA-GF-A6C9-06 1 196577421 196577421 C T KCNT2 Missense_Mutation p.E7K 0.10 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-GF-A6C9-06 1 196879431 196879431 C T CFHR4 Missense_Mutation p.P273S 0.21 deleterious(0.02) possibly_damaging(0.639) TCGA-GF-A6C9-06 1 196887467 196887467 G A CFHR4 Silent p.A555A 0.14 TCGA-GF-A6C9-06 1 196928109 196928109 G A CFHR2 Missense_Mutation p.E238K 0.16 deleterious(0) benign(0.354) TCGA-GF-A6C9-06 1 197073620 197073620 G A ASPM Silent p.I1587I 0.13 TCGA-GF-A6C9-06 1 197390392 197390392 C T CRB1 Silent p.S478S 0.31 TCGA-GF-A6C9-06 1 197404006 197404006 G A CRB1 Missense_Mutation p.D1005N 0.08 tolerated(0.4) benign(0.065) TCGA-GF-A6C9-06 1 197404087 197404087 G A CRB1 Missense_Mutation p.G1032S 0.09 deleterious(0) probably_damaging(0.978) TCGA-GF-A6C9-06 1 197404270 197404270 C T CRB1 Silent p.L1093L 0.10 TCGA-GF-A6C9-06 1 197404448 197404448 G A CRB1 Missense_Mutation p.G1152E 0.13 deleterious(0) probably_damaging(0.973) TCGA-GF-A6C9-06 1 197627492 197627492 G A DENND1B Missense_Mutation p.P102S 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 200635235 200635235 C T DDX59 Missense_Mutation p.E212K 0.14 tolerated(0.1) benign(0.439) TCGA-GF-A6C9-06 1 200635236 200635236 A T DDX59 Silent p.P211P 0.14 TCGA-GF-A6C9-06 1 201035008 201035008 G A CACNA1S Silent p.L937L 0.15 TCGA-GF-A6C9-06 1 201185664 201185664 G A IGFN1 Silent p.R3126R 0.14 TCGA-GF-A6C9-06 1 201194981 201194981 C T IGFN1 Silent p.L3506L 0.15 TCGA-GF-A6C9-06 1 201355513 201355513 C T LAD1 Missense_Mutation p.A326T 0.27 tolerated(0.44) benign(0.023) TCGA-GF-A6C9-06 1 203194946 203194946 C T CHIT1 Silent p.Q36Q 0.16 TCGA-GF-A6C9-06 1 205497216 205497216 C T CDK18 Silent p.S328S 0.15 TCGA-GF-A6C9-06 1 206239354 206239354 G A C1orf186 3'UTR 0.19 TCGA-GF-A6C9-06 1 206820811 206820811 C T DYRK3 Nonsense_Mutation p.Q90* 0.08 TCGA-GF-A6C9-06 1 207510695 207510695 C T CD55 Missense_Mutation p.S334F 0.20 deleterious(0.02) probably_damaging(0.931) TCGA-GF-A6C9-06 1 20827741 20827741 G A MUL1 Silent p.T167T 0.11 TCGA-GF-A6C9-06 1 20915757 20915757 G T CDA Missense_Mutation p.Q45H 0.11 tolerated(0.13) benign(0) TCGA-GF-A6C9-06 1 209779668 209779668 G A CAMK1G Missense_Mutation p.E147K 0.15 deleterious(0.03) benign(0.086) TCGA-GF-A6C9-06 1 210194391 210194391 C T SYT14 Silent p.S123S 0.15 TCGA-GF-A6C9-06 1 210415285 210415285 C T SERTAD4 Missense_Mutation p.S225F 0.08 tolerated(0.16) benign(0.069) TCGA-GF-A6C9-06 1 21050577 21050577 G A SH2D5 Silent p.A266A 0.08 TCGA-GF-A6C9-06 1 211093131 211093131 C T KCNH1 Missense_Mutation p.G438E 0.15 tolerated(0.12) benign(0.444) TCGA-GF-A6C9-06 1 212799381 212799381 G A FAM71A Missense_Mutation p.D388N 0.16 tolerated(0.36) benign(0.216) TCGA-GF-A6C9-06 1 213146091 213146091 C T VASH2 Missense_Mutation p.R179W 0.12 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 1 214818217 214818217 T G CENPF Missense_Mutation p.D1768E 0.16 benign(0) TCGA-GF-A6C9-06 1 214825138 214825138 G A CENPF Missense_Mutation p.G2690E 0.14 benign(0.003) TCGA-GF-A6C9-06 1 214828663 214828663 C T CENPF Missense_Mutation p.S2801F 0.17 probably_damaging(0.998) TCGA-GF-A6C9-06 1 216420210 216420210 G A USH2A Silent p.F842F 0.08 TCGA-GF-A6C9-06 1 216465577 216465577 G A USH2A Missense_Mutation p.P594S 0.08 probably_damaging(0.992) TCGA-GF-A6C9-06 1 217856630 217856630 C T SPATA17 Missense_Mutation p.R108W 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 220936323 220936323 G A MARC2 Missense_Mutation p.M227I 0.15 deleterious(0.01) benign(0.079) TCGA-GF-A6C9-06 1 222713472 222713472 C T HHIPL2 Missense_Mutation p.D444N 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 223568221 223568221 G A C1orf65 Silent p.K468K 0.17 TCGA-GF-A6C9-06 1 226055597 226055597 C T TMEM63A Missense_Mutation p.D169N 0.13 tolerated(0.53) benign(0.024) TCGA-GF-A6C9-06 1 226128681 226128681 G A LEFTY2 Missense_Mutation p.P54S 0.14 tolerated(0.06) probably_damaging(0.936) TCGA-GF-A6C9-06 1 228238581 228238581 C T WNT3A Missense_Mutation p.R180C 0.18 deleterious(0) probably_damaging(0.989) TCGA-GF-A6C9-06 1 228432124 228432124 G A OBSCN Silent p.G1203G 0.08 TCGA-GF-A6C9-06 1 228487623 228487623 G A OBSCN Silent p.K4505K 0.10 TCGA-GF-A6C9-06 1 228879032 228879032 G A RHOU Missense_Mutation p.D108N 0.15 deleterious(0) probably_damaging(0.909) TCGA-GF-A6C9-06 1 2290105 2290105 C T MORN1 Silent p.Q265Q 0.14 TCGA-GF-A6C9-06 1 229462600 229462600 G A CCSAP Missense_Mutation p.S174L 0.08 tolerated(0.12) benign(0.033) TCGA-GF-A6C9-06 1 229730571 229730571 G A TAF5L Missense_Mutation p.R415W 0.18 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 22973975 22973975 A G C1QC Missense_Mutation p.N146S 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-GF-A6C9-06 1 233135013 233135013 C A PCNXL2 Missense_Mutation p.R1814L 0.27 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 1 233313571 233313571 G A PCNXL2 Missense_Mutation p.P1084S 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-GF-A6C9-06 1 233394133 233394133 G A PCNXL2 Missense_Mutation p.S492L 0.10 tolerated_low_confidence(0.05) benign(0.003) TCGA-GF-A6C9-06 1 234041328 234041328 C T SLC35F3 Missense_Mutation p.P36L 0.17 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 1 23519780 23519780 G A HTR1D Silent p.I311I 0.23 TCGA-GF-A6C9-06 1 23520036 23520036 T C HTR1D Missense_Mutation p.N226S 0.13 tolerated(1) benign(0.003) TCGA-GF-A6C9-06 1 23520110 23520110 G A HTR1D Silent p.S201S 0.29 TCGA-GF-A6C9-06 1 238050806 238050806 C T ZP4 Silent p.V203V 0.12 TCGA-GF-A6C9-06 1 24083481 24083481 C T TCEB3 Missense_Mutation p.A734V 0.07 tolerated(0.35) benign(0.001) TCGA-GF-A6C9-06 1 240977013 240977013 C T RGS7 Silent p.T287T 0.16 TCGA-GF-A6C9-06 1 2431126 2431126 C T PLCH2 Silent p.F849F 0.23 TCGA-GF-A6C9-06 1 24394468 24394468 C T MYOM3 Missense_Mutation p.R1116K 0.20 tolerated(0.13) benign(0.034) TCGA-GF-A6C9-06 1 244217908 244217908 C T ZBTB18 Silent p.L278L 0.11 TCGA-GF-A6C9-06 1 2444431 2444431 G A PANK4 Silent p.V541V 0.19 TCGA-GF-A6C9-06 1 247201223 247201223 G A ZNF670 Missense_Mutation p.S233L 0.12 deleterious(0) benign(0.342) TCGA-GF-A6C9-06 1 247719744 247719744 G A GCSAML Missense_Mutation p.G22E 0.23 tolerated(0.69) benign(0.008) TCGA-GF-A6C9-06 1 247737738 247737738 G A GCSAML 3'UTR 0.14 TCGA-GF-A6C9-06 1 247751667 247751667 G A OR2G2 Silent p.G2G 0.09 TCGA-GF-A6C9-06 1 247752598 247752598 G A OR2G2 Missense_Mutation p.G313R 0.14 tolerated(0.22) unknown(0) TCGA-GF-A6C9-06 1 247769807 247769807 G A OR2G3 Missense_Mutation p.G307E 0.11 tolerated(0.36) benign(0.014) TCGA-GF-A6C9-06 1 247920898 247920898 C T OR1C1 Missense_Mutation p.D271N 0.16 tolerated(0.05) probably_damaging(0.998) TCGA-GF-A6C9-06 1 248059200 248059200 C T OR2W3 Silent p.F104F 0.18 TCGA-GF-A6C9-06 1 248084427 248084427 C T OR2T8 Silent p.S36S 0.15 TCGA-GF-A6C9-06 1 248112655 248112655 C T OR2L8 Missense_Mutation p.P166S 0.15 tolerated(0.09) benign(0.433) TCGA-GF-A6C9-06 1 248201816 248201816 G A OR2L2 Missense_Mutation p.D83N 0.15 tolerated(1) benign(0.002) TCGA-GF-A6C9-06 1 248224344 248224344 C T OR2L3 Missense_Mutation p.R121C 0.16 deleterious(0.01) benign(0.052) TCGA-GF-A6C9-06 1 248366960 248366960 G A OR2M3 Silent p.K197K 0.08 TCGA-GF-A6C9-06 1 248458370 248458370 C T OR2T12 Missense_Mutation p.E171K 0.17 tolerated(0.13) possibly_damaging(0.477) TCGA-GF-A6C9-06 1 248652154 248652154 C T OR2T5 Nonsense_Mutation p.Q89* 0.24 TCGA-GF-A6C9-06 1 248789973 248789973 C T OR2T11 Missense_Mutation p.G153S 0.18 tolerated(0.11) probably_damaging(1) TCGA-GF-A6C9-06 1 249151506 249151506 G A ZNF692 Silent p.P139P 0.14 TCGA-GF-A6C9-06 1 25679392 25679392 C T TMEM50A Silent p.F98F 0.16 TCGA-GF-A6C9-06 1 25747200 25747200 G A RHCE Silent p.L26L 0.10 TCGA-GF-A6C9-06 1 26098178 26098178 G A MAN1C1 Missense_Mutation p.S391N 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 26527522 26527522 G A CATSPER4 Missense_Mutation p.E397K 0.20 deleterious(0.04) possibly_damaging(0.831) TCGA-GF-A6C9-06 1 27056151 27056151 C T ARID1A Missense_Mutation p.P383S 0.16 possibly_damaging(0.676) TCGA-GF-A6C9-06 1 27269230 27269230 C T NUDC Missense_Mutation p.P170L 0.24 deleterious(0.01) possibly_damaging(0.753) TCGA-GF-A6C9-06 1 27939619 27939619 C T FGR Missense_Mutation p.E466K 0.16 deleterious(0) possibly_damaging(0.812) TCGA-GF-A6C9-06 1 28793200 28793200 C T PHACTR4 Silent p.S258S 0.24 TCGA-GF-A6C9-06 1 2938637 2938637 G A ACTRT2 Silent p.E129E 0.24 TCGA-GF-A6C9-06 1 2938643 2938643 C T ACTRT2 Silent p.F131F 0.12 TCGA-GF-A6C9-06 1 29474962 29474962 G A SRSF4 Missense_Mutation p.S482L 0.13 deleterious_low_confidence(0) unknown(0) TCGA-GF-A6C9-06 1 29475202 29475202 G A SRSF4 Missense_Mutation p.S402F 0.18 deleterious_low_confidence(0) unknown(0) TCGA-GF-A6C9-06 1 29557427 29557427 C T MECR 5'UTR 0.15 TCGA-GF-A6C9-06 1 32096264 32096264 G A PEF1 Missense_Mutation p.R269W 0.21 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 1 32628082 32628082 G A KPNA6 Missense_Mutation p.V290I 0.10 deleterious(0.05) probably_damaging(0.937) TCGA-GF-A6C9-06 1 3322174 3322174 A C PRDM16 Missense_Mutation p.Q383P 0.21 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 1 33246770 33246770 A T YARS Intron 0.19 TCGA-GF-A6C9-06 1 34033266 34033266 G A CSMD2 Silent p.F2746F 0.19 TCGA-GF-A6C9-06 1 34052159 34052159 C T CSMD2 Silent p.L2334L 0.16 TCGA-GF-A6C9-06 1 34076690 34076690 G A CSMD2 Silent p.F2058F 0.10 TCGA-GF-A6C9-06 1 34087804 34087804 G A CSMD2 Silent p.I1890I 0.15 TCGA-GF-A6C9-06 1 34123618 34123618 C T CSMD2 Missense_Mutation p.G1419R 0.07 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 1 34204900 34204900 G A CSMD2 Missense_Mutation p.P697S 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 34204930 34204930 G A CSMD2 Nonsense_Mutation p.R687* 0.16 TCGA-GF-A6C9-06 1 34329811 34329811 C G HMGB4 Missense_Mutation p.L7V 0.11 tolerated(0.23) benign(0.026) TCGA-GF-A6C9-06 1 34401369 34401369 G A CSMD2 Missense_Mutation p.S195F 0.29 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 1 34401548 34401548 G A CSMD2 Silent p.P135P 0.18 TCGA-GF-A6C9-06 1 35251257 35251257 G A GJB3 3'UTR 0.31 TCGA-GF-A6C9-06 1 35658311 35658311 C T SFPQ Missense_Mutation p.G114R 0.36 tolerated_low_confidence(0.32) unknown(0) TCGA-GF-A6C9-06 1 36636769 36636769 C T MAP7D1 Missense_Mutation p.P82S 0.26 benign(0.017) TCGA-GF-A6C9-06 1 36807398 36807398 G A STK40 Silent p.S422S 0.12 TCGA-GF-A6C9-06 1 37307474 37307474 A G GRIK3 Missense_Mutation p.Y465H 0.22 deleterious(0) probably_damaging(0.957) TCGA-GF-A6C9-06 1 37307481 37307481 G A GRIK3 Silent p.F462F 0.21 TCGA-GF-A6C9-06 1 38078267 38078267 G A RSPO1 3'UTR 0.21 TCGA-GF-A6C9-06 1 38078544 38078544 C T RSPO1 Silent p.R225R 0.12 TCGA-GF-A6C9-06 1 38227471 38227471 G A EPHA10 Silent p.I152I 0.21 TCGA-GF-A6C9-06 1 38265329 38265329 C T MANEAL Silent p.S276S 0.07 TCGA-GF-A6C9-06 1 38409517 38409517 G A INPP5B Silent p.V67V 0.09 TCGA-GF-A6C9-06 1 39788363 39788363 C T MACF1 Silent p.S1376S 0.24 TCGA-GF-A6C9-06 1 40129047 40129047 C T NT5C1A Missense_Mutation p.A165T 0.10 deleterious(0.04) probably_damaging(0.913) TCGA-GF-A6C9-06 1 40129048 40129048 C T NT5C1A Silent p.K164K 0.10 TCGA-GF-A6C9-06 1 40219073 40219073 C T PPIE Intron 0.24 TCGA-GF-A6C9-06 1 40713878 40713878 G A TMCO2 Nonsense_Mutation p.W71* 0.25 TCGA-GF-A6C9-06 1 40726603 40726603 G A ZMPSTE24 Silent p.L72L 0.23 TCGA-GF-A6C9-06 1 42046487 42046487 G A HIVEP3 Missense_Mutation p.P1328S 0.20 probably_damaging(0.998) TCGA-GF-A6C9-06 1 42628612 42628612 C T GUCA2A Missense_Mutation p.E105K 0.25 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 43204144 43204144 G A CLDN19 Silent p.P112P 0.11 TCGA-GF-A6C9-06 1 43305956 43305956 G A ERMAP Missense_Mutation p.R234Q 0.10 tolerated(0.29) benign(0.015) TCGA-GF-A6C9-06 1 43905598 43905598 G A SZT2 Silent p.G2306G 0.13 TCGA-GF-A6C9-06 1 44069477 44069477 G A PTPRF Missense_Mutation p.G885E 0.22 deleterious(0.05) probably_damaging(1) TCGA-GF-A6C9-06 1 44069556 44069556 C T PTPRF Silent p.P911P 0.13 TCGA-GF-A6C9-06 1 44083235 44083235 C T PTPRF Silent p.I1397I 0.13 TCGA-GF-A6C9-06 1 44878037 44878037 C T RNF220 Missense_Mutation p.P90S 0.10 tolerated(0.09) benign(0.095) TCGA-GF-A6C9-06 1 46976844 46976844 C T DMBX1 Nonsense_Mutation p.Q191* 0.13 TCGA-GF-A6C9-06 1 47279168 47279168 G A CYP4B1 Silent p.E170E 0.16 TCGA-GF-A6C9-06 1 47280901 47280901 C A CYP4B1 Silent p.V346V 0.13 TCGA-GF-A6C9-06 1 47325439 47325439 G A CYP4Z2P RNA 0.19 TCGA-GF-A6C9-06 1 47395895 47395895 G A CYP4A11 Silent p.P484P 0.20 TCGA-GF-A6C9-06 1 47398409 47398409 G A CYP4A11 Intron 0.16 TCGA-GF-A6C9-06 1 47582349 47582349 G A CYP4Z1 Missense_Mutation p.E432K 0.16 deleterious(0.04) benign(0.055) TCGA-GF-A6C9-06 1 47610403 47610403 C T CYP4A22 Missense_Mutation p.S360F 0.19 tolerated(0.07) possibly_damaging(0.698) TCGA-GF-A6C9-06 1 47611818 47611818 G A CYP4A22 Missense_Mutation p.G453R 0.16 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 1 47689679 47689679 C T TAL1 Missense_Mutation p.D180N 0.05 deleterious(0) benign(0.044) TCGA-GF-A6C9-06 1 4772522 4772522 C T AJAP1 Missense_Mutation p.P198S 0.24 deleterious(0.02) probably_damaging(0.982) TCGA-GF-A6C9-06 1 4832427 4832427 C T AJAP1 Silent p.F335F 0.19 TCGA-GF-A6C9-06 1 53122529 53122529 G A FAM159A Silent p.V130V 0.18 TCGA-GF-A6C9-06 1 53580519 53580519 G A SLC1A7 Silent p.I114I 0.25 TCGA-GF-A6C9-06 1 53925585 53925585 G A DMRTB1 Silent p.A153A 0.23 TCGA-GF-A6C9-06 1 55080521 55080521 C T FAM151A Missense_Mutation p.D143N 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-GF-A6C9-06 1 55119209 55119209 C T MROH7 Missense_Mutation p.P204S 0.24 tolerated_low_confidence(0.06) benign(0.098) TCGA-GF-A6C9-06 1 55148452 55148452 C T MROH7 Silent p.S835S 0.19 TCGA-GF-A6C9-06 1 55152041 55152041 C T MROH7 Silent p.I877I 0.25 TCGA-GF-A6C9-06 1 55266738 55266738 G A TTC22 Silent p.F33F 0.21 TCGA-GF-A6C9-06 1 55282743 55282743 C T C1orf177 Silent p.L378L 0.26 TCGA-GF-A6C9-06 1 55545306 55545306 G A USP24 Missense_Mutation p.P2369S 0.20 tolerated(0.33) benign(0.004) TCGA-GF-A6C9-06 1 56962279 56962279 C T PPAP2B Missense_Mutation p.E294K 0.10 tolerated(0.07) benign(0.075) TCGA-GF-A6C9-06 1 57258330 57258330 C T C1orf168 Silent p.G52G 0.12 TCGA-GF-A6C9-06 1 57347148 57347148 G A C8A Silent p.Q165Q 0.13 TCGA-GF-A6C9-06 1 57411519 57411519 C T C8B Missense_Mutation p.M360I 0.19 tolerated(0.22) benign(0.013) TCGA-GF-A6C9-06 1 57476906 57476906 G A DAB1 Missense_Mutation p.S495L 0.30 tolerated(0.22) probably_damaging(0.939) TCGA-GF-A6C9-06 1 57480669 57480669 G A DAB1 Missense_Mutation p.S444F 0.11 deleterious(0.01) possibly_damaging(0.637) TCGA-GF-A6C9-06 1 57480745 57480745 G A DAB1 Nonsense_Mutation p.Q419* 0.18 TCGA-GF-A6C9-06 1 60325955 60325955 T A HOOK1 Missense_Mutation p.L496Q 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 1 60499261 60499261 C T C1orf87 Missense_Mutation p.E306K 0.11 tolerated(0.09) possibly_damaging(0.558) TCGA-GF-A6C9-06 1 60503777 60503777 C T C1orf87 Silent p.V250V 0.19 TCGA-GF-A6C9-06 1 6202197 6202197 G A CHD5 Silent p.F809F 0.16 TCGA-GF-A6C9-06 1 6204140 6204140 G A CHD5 Silent p.I626I 0.21 TCGA-GF-A6C9-06 1 6214928 6214928 G A CHD5 Silent p.I179I 0.16 TCGA-GF-A6C9-06 1 6228297 6228297 G A CHD5 Silent p.F40F 0.11 TCGA-GF-A6C9-06 1 62675842 62675842 G A L1TD1 Missense_Mutation p.E466K 0.18 deleterious(0.02) benign(0.176) TCGA-GF-A6C9-06 1 62675914 62675914 G A L1TD1 Missense_Mutation p.G490R 0.08 tolerated(0.13) benign(0.07) TCGA-GF-A6C9-06 1 63024834 63024834 G A DOCK7 Missense_Mutation p.P753S 0.27 deleterious(0) probably_damaging(0.967) TCGA-GF-A6C9-06 1 64022864 64022864 G T EFCAB7 Nonsense_Mutation p.E432* 0.23 TCGA-GF-A6C9-06 1 64606080 64606080 G A ROR1 Missense_Mutation p.G300E 0.27 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 1 65113553 65113553 G A CACHD1 Missense_Mutation p.G358D 0.15 tolerated(0.4) benign(0.003) TCGA-GF-A6C9-06 1 66713282 66713282 G A PDE4B Missense_Mutation p.D141N 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 67147854 67147854 C T SGIP1 Missense_Mutation p.P373S 0.06 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-GF-A6C9-06 1 67519626 67519626 C T SLC35D1 Missense_Mutation p.R24Q 0.15 tolerated(0.44) benign(0.012) TCGA-GF-A6C9-06 1 68512954 68512954 C T DIRAS3 Silent p.K9K 0.10 TCGA-GF-A6C9-06 1 71437351 71437351 G A PTGER3 Intron 0.18 TCGA-GF-A6C9-06 1 75037670 75037670 C T C1orf173 Missense_Mutation p.E1242K 0.19 deleterious(0.03) possibly_damaging(0.795) TCGA-GF-A6C9-06 1 75055196 75055196 A G C1orf173 Intron 0.19 TCGA-GF-A6C9-06 1 75065508 75065508 C T C1orf173 Missense_Mutation p.D533N 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-GF-A6C9-06 1 75086533 75086533 C T C1orf173 Silent p.G295G 0.15 TCGA-GF-A6C9-06 1 75685015 75685015 G A SLC44A5 Missense_Mutation p.S398L 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-GF-A6C9-06 1 75704243 75704243 C T SLC44A5 Missense_Mutation p.G204E 0.08 deleterious(0.04) probably_damaging(0.979) TCGA-GF-A6C9-06 1 7700570 7700570 G A CAMTA1 Silent p.A207A 0.19 TCGA-GF-A6C9-06 1 7724071 7724071 C T CAMTA1 Silent p.F488F 0.07 TCGA-GF-A6C9-06 1 7724482 7724482 C T CAMTA1 Silent p.L625L 0.21 TCGA-GF-A6C9-06 1 77752666 77752666 C T AK5 Missense_Mutation p.P34L 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-GF-A6C9-06 1 7837362 7837362 G A VAMP3 Nonsense_Mutation p.W72* 0.13 TCGA-GF-A6C9-06 1 79101110 79101110 G A IFI44L Missense_Mutation p.G271E 0.20 tolerated(0.98) benign(0.278) TCGA-GF-A6C9-06 1 7912983 7912983 C T UTS2 Silent p.L42L 0.08 TCGA-GF-A6C9-06 1 82416102 82416102 G A LPHN2 Silent p.G476G 0.31 TCGA-GF-A6C9-06 1 82432206 82432206 C T LPHN2 Silent p.N737N 0.07 TCGA-GF-A6C9-06 1 82434986 82434986 G A LPHN2 Missense_Mutation p.R866Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 1 82436122 82436122 G A LPHN2 Missense_Mutation p.R936K 0.18 deleterious(0.01) possibly_damaging(0.511) TCGA-GF-A6C9-06 1 82446516 82446516 T C LPHN2 Intron 0.07 TCGA-GF-A6C9-06 1 85559244 85559244 C T WDR63 Missense_Mutation p.H321Y 0.19 tolerated(0.78) benign(0.003) TCGA-GF-A6C9-06 1 85816137 85816137 G A DDAH1 Silent p.I186I 0.19 TCGA-GF-A6C9-06 1 86210383 86210383 T C COL24A1 Silent p.K1546K 0.19 TCGA-GF-A6C9-06 1 86591027 86591027 C T COL24A1 Missense_Mutation p.G331E 0.12 tolerated(0.8) benign(0.006) TCGA-GF-A6C9-06 1 86965769 86965769 C T CLCA1 3'UTR 0.29 TCGA-GF-A6C9-06 1 87102522 87102522 G A RP4-651E10.4 Intron 0.19 TCGA-GF-A6C9-06 1 89478895 89478895 A - GBP3 Frame_Shift_Del p.S281Qfs*11 0.15 TCGA-GF-A6C9-06 1 9009476 9009476 C T CA6 Silent p.F78F 0.16 TCGA-GF-A6C9-06 1 9064904 9064904 G A SLC2A7 Silent p.F409F 0.26 TCGA-GF-A6C9-06 1 907761 907761 G A PLEKHN1 Missense_Mutation p.G320E 0.21 deleterious(0.01) possibly_damaging(0.844) TCGA-GF-A6C9-06 1 9079356 9079356 G A SLC2A7 Silent p.I116I 0.20 TCGA-GF-A6C9-06 1 91818668 91818668 C T HFM1 Missense_Mutation p.E591K 0.18 deleterious(0.02) possibly_damaging(0.9) TCGA-GF-A6C9-06 1 92469970 92469970 G A BRDT Splice_Site p.X797_splice 0.17 TCGA-GF-A6C9-06 1 92568084 92568084 G A BTBD8 Silent p.R134R 0.15 TCGA-GF-A6C9-06 1 92979436 92979436 G A EVI5 Missense_Mutation p.S737L 0.09 deleterious_low_confidence(0.04) benign(0.002) TCGA-GF-A6C9-06 1 94502323 94502323 C T ABCA4 Missense_Mutation p.D1279N 0.22 deleterious(0.04) benign(0.033) TCGA-GF-A6C9-06 1 94512510 94512510 G A ABCA4 Silent p.F961F 0.23 TCGA-GF-A6C9-06 1 94517234 94517234 G A ABCA4 Missense_Mutation p.P870S 0.16 deleterious(0.04) benign(0.244) TCGA-GF-A6C9-06 1 94526105 94526105 C T ABCA4 Silent p.T716T 0.18 TCGA-GF-A6C9-06 1 94543278 94543278 G A ABCA4 Missense_Mutation p.R508C 0.14 deleterious(0.03) possibly_damaging(0.582) TCGA-GF-A6C9-06 1 94640213 94640213 C T ARHGAP29 Missense_Mutation p.D1000N 0.20 tolerated(0.55) benign(0.004) TCGA-GF-A6C9-06 1 94650959 94650959 G A ARHGAP29 Missense_Mutation p.S620F 0.13 deleterious(0.04) benign(0.133) TCGA-GF-A6C9-06 1 94671218 94671218 C T ARHGAP29 Missense_Mutation p.E178K 0.18 tolerated(0.09) benign(0.11) TCGA-GF-A6C9-06 1 95609539 95609539 T C TMEM56 Missense_Mutation p.Y28H 0.15 tolerated(0.35) benign(0.027) TCGA-GF-A6C9-06 1 98348911 98348911 G A DPYD Missense_Mutation p.P20L 0.10 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 20 10035153 10035153 G A ANKEF1 Missense_Mutation p.G693E 0.17 tolerated(1) benign(0) TCGA-GF-A6C9-06 20 10035157 10035157 G A ANKEF1 Silent p.K694K 0.22 TCGA-GF-A6C9-06 20 10603396 10603396 C T SLX4IP Missense_Mutation p.A199V 0.24 tolerated(0.18) benign(0.005) TCGA-GF-A6C9-06 20 10625561 10625561 G A JAG1 Missense_Mutation p.S765F 0.16 deleterious(0) probably_damaging(0.966) TCGA-GF-A6C9-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.21 tolerated(0.25) probably_damaging(0.996) TCGA-GF-A6C9-06 20 13260476 13260476 C T ISM1 Missense_Mutation p.P192S 0.13 tolerated(0.5) benign(0.049) TCGA-GF-A6C9-06 20 1551458 1551458 G A SIRPB1 Silent p.I359I 0.11 TCGA-GF-A6C9-06 20 1551666 1551666 C T SIRPB1 Missense_Mutation p.G290E 0.16 deleterious(0.02) possibly_damaging(0.64) TCGA-GF-A6C9-06 20 1552537 1552537 G A SIRPB1 Nonsense_Mutation p.Q194* 0.13 TCGA-GF-A6C9-06 20 1592205 1592205 T A SIRPB1 Intron 0.24 TCGA-GF-A6C9-06 20 17417442 17417442 G A PCSK2 Missense_Mutation p.A267T 0.13 deleterious(0.01) probably_damaging(0.96) TCGA-GF-A6C9-06 20 18794437 18794437 G A SCP2D1 5'UTR 0.21 TCGA-GF-A6C9-06 20 18794525 18794525 C T SCP2D1 Silent p.F22F 0.09 TCGA-GF-A6C9-06 20 20177352 20177352 G A C20orf26 Missense_Mutation p.E577K 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 20 21314463 21314463 C T XRN2 Missense_Mutation p.S352L 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 20 2321084 2321084 C T TGM3 Missense_Mutation p.P647S 0.07 tolerated(0.07) possibly_damaging(0.791) TCGA-GF-A6C9-06 20 23346017 23346017 C T GZF1 Silent p.L333L 0.19 TCGA-GF-A6C9-06 20 23476604 23476604 G A CST8 3'UTR 0.14 TCGA-GF-A6C9-06 20 2542621 2542621 G T TMC2 Missense_Mutation p.K173N 0.09 deleterious(0.04) probably_damaging(0.98) TCGA-GF-A6C9-06 20 2774880 2774880 C T CPXM1 Missense_Mutation p.D721N 0.12 tolerated(0.08) possibly_damaging(0.756) TCGA-GF-A6C9-06 20 2774947 2774947 G A CPXM1 Silent p.F698F 0.17 TCGA-GF-A6C9-06 20 2841187 2841187 C T VPS16 Silent p.T154T 0.10 TCGA-GF-A6C9-06 20 2945772 2945772 C T PTPRA Silent p.F113F 0.14 TCGA-GF-A6C9-06 20 29847306 29847306 G A DEFB115 Silent p.R46R 0.20 TCGA-GF-A6C9-06 20 29978284 29978284 C T DEFB119 Translation_Start_Site p.M1? 0.18 deleterious(0) unknown(0) TCGA-GF-A6C9-06 20 30510802 30510802 C T TTLL9 Missense_Mutation p.P204S 0.21 tolerated(0.14) benign(0.101) TCGA-GF-A6C9-06 20 30522560 30522560 G A TTLL9 Silent p.V291V 0.10 TCGA-GF-A6C9-06 20 30610518 30610518 G A CCM2L Missense_Mutation p.G330E 0.08 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 20 30745677 30745677 C T TM9SF4 Silent p.F470F 0.06 TCGA-GF-A6C9-06 20 30784574 30784574 A G PLAGL2 Missense_Mutation p.L391P 0.12 tolerated(0.28) benign(0.348) TCGA-GF-A6C9-06 20 30898185 30898185 C T KIF3B Missense_Mutation p.S202F 0.09 deleterious(0) probably_damaging(0.987) TCGA-GF-A6C9-06 20 31652477 31652477 C T BPIFB3 Silent p.I250I 0.23 TCGA-GF-A6C9-06 20 31763283 31763283 G A BPIFA2 Missense_Mutation p.D161N 0.12 tolerated(0.15) possibly_damaging(0.571) TCGA-GF-A6C9-06 20 31885376 31885376 C T BPIFB1 Missense_Mutation p.L215F 0.07 tolerated(0.33) benign(0.198) TCGA-GF-A6C9-06 20 31975337 31975337 A C CDK5RAP1 Missense_Mutation p.C183G 0.14 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 20 32267680 32267680 G A E2F1 Silent p.V151V 0.19 TCGA-GF-A6C9-06 20 33026409 33026409 C T ITCH Missense_Mutation p.P259S 0.14 tolerated(0.36) probably_damaging(0.999) TCGA-GF-A6C9-06 20 33328830 33328830 G A NCOA6 Missense_Mutation p.P1744S 0.08 probably_damaging(0.91) TCGA-GF-A6C9-06 20 33587611 33587611 G A MYH7B Silent p.E1603E 0.10 TCGA-GF-A6C9-06 20 34055265 34055265 C T CEP250 Silent p.L246L 0.10 TCGA-GF-A6C9-06 20 34317262 34317262 G A RBM39 Missense_Mutation p.P130S 0.14 tolerated(0.06) benign(0.227) TCGA-GF-A6C9-06 20 35532654 35532654 T A SAMHD1 Splice_Site p.X471_splice 0.16 TCGA-GF-A6C9-06 20 36767898 36767898 G A TGM2 Silent p.L420L 0.19 TCGA-GF-A6C9-06 20 3736162 3736162 G A C20orf27 Silent p.V110V 0.17 TCGA-GF-A6C9-06 20 37534656 37534656 C T PPP1R16B Silent p.L247L 0.10 TCGA-GF-A6C9-06 20 3914733 3914733 G A RNF24 Missense_Mutation p.P163S 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-GF-A6C9-06 20 39742750 39742750 G A TOP1 Silent p.G531G 0.13 TCGA-GF-A6C9-06 20 40125947 40125947 G A CHD6 Intron 0.32 TCGA-GF-A6C9-06 20 40710585 40710585 G A PTPRT Silent p.I1403I 0.14 TCGA-GF-A6C9-06 20 40980866 40980866 C T PTPRT Silent p.G540G 0.11 TCGA-GF-A6C9-06 20 41076944 41076944 G A PTPRT Silent p.S492S 0.15 TCGA-GF-A6C9-06 20 41306696 41306696 G A PTPRT Silent p.I321I 0.24 TCGA-GF-A6C9-06 20 42355239 42355239 C T GTSF1L Silent p.K32K 0.16 TCGA-GF-A6C9-06 20 42574535 42574535 C T TOX2 Intron 0.16 TCGA-GF-A6C9-06 20 42891901 42891901 G A GDAP1L1 Missense_Mutation p.M193I 0.11 tolerated(0.16) benign(0.045) TCGA-GF-A6C9-06 20 43058278 43058278 G A HNF4A Silent p.P466P 0.13 TCGA-GF-A6C9-06 20 43257723 43257723 G A ADA Silent p.F61F 0.12 TCGA-GF-A6C9-06 20 43385614 43385614 G A RIMS4 Silent p.V173V 0.09 TCGA-GF-A6C9-06 20 43836114 43836114 C T SEMG1 Missense_Mutation p.S59F 0.09 tolerated(0.14) probably_damaging(0.998) TCGA-GF-A6C9-06 20 43850481 43850481 C T SEMG2 Missense_Mutation p.H70Y 0.14 deleterious(0.02) probably_damaging(0.954) TCGA-GF-A6C9-06 20 43851757 43851757 C T SEMG2 Missense_Mutation p.S495F 0.23 tolerated(0.67) unknown(0) TCGA-GF-A6C9-06 20 43927045 43927045 G A MATN4 Silent p.F397F 0.11 TCGA-GF-A6C9-06 20 44002540 44002540 G A TP53TG5 3'UTR 0.12 TCGA-GF-A6C9-06 20 44190810 44190810 G A WFDC8 Silent p.F25F 0.12 TCGA-GF-A6C9-06 20 44455922 44455922 C T TNNC2 5'UTR 0.17 TCGA-GF-A6C9-06 20 44596018 44596018 G A ZNF335 Intron 0.36 TCGA-GF-A6C9-06 20 44598277 44598277 G A ZNF335 Silent p.L85L 0.14 TCGA-GF-A6C9-06 20 44663604 44663604 G A SLC12A5 Missense_Mutation p.E47K 0.08 deleterious(0.04) possibly_damaging(0.844) TCGA-GF-A6C9-06 20 44685174 44685174 G A SLC12A5 Silent p.E1050E 0.18 TCGA-GF-A6C9-06 20 44869822 44869822 G A CDH22 Silent p.F110F 0.20 TCGA-GF-A6C9-06 20 45216730 45216730 G A SLC13A3 Silent p.F363F 0.18 TCGA-GF-A6C9-06 20 45354552 45354552 C T SLC2A10 Missense_Mutation p.R293C 0.15 deleterious(0) probably_damaging(0.965) TCGA-GF-A6C9-06 20 45354861 45354861 C T SLC2A10 Missense_Mutation p.P396S 0.14 tolerated(0.29) benign(0.011) TCGA-GF-A6C9-06 20 45867868 45867868 G A ZMYND8 Missense_Mutation p.P767S 0.10 deleterious_low_confidence(0) benign(0.236) TCGA-GF-A6C9-06 20 46307470 46307470 C T SULF2 Missense_Mutation p.M381I 0.11 deleterious(0.05) benign(0.123) TCGA-GF-A6C9-06 20 47736562 47736562 G T STAU1 Missense_Mutation p.P357Q 0.10 tolerated(0.05) probably_damaging(0.963) TCGA-GF-A6C9-06 20 49354562 49354562 C T PARD6B Missense_Mutation p.H79Y 0.15 tolerated(1) benign(0.021) TCGA-GF-A6C9-06 20 50701519 50701519 G A ZFP64 Silent p.S505S 0.14 TCGA-GF-A6C9-06 20 51870476 51870476 G A TSHZ2 Missense_Mutation p.G160D 0.18 deleterious(0.03) possibly_damaging(0.807) TCGA-GF-A6C9-06 20 51870597 51870597 G A TSHZ2 Silent p.Q200Q 0.17 TCGA-GF-A6C9-06 20 51870681 51870681 C T TSHZ2 Silent p.V228V 0.10 TCGA-GF-A6C9-06 20 51871974 51871974 A T TSHZ2 Missense_Mutation p.K659N 0.15 tolerated(0.21) benign(0.064) TCGA-GF-A6C9-06 20 51872281 51872281 G A TSHZ2 Missense_Mutation p.D762N 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-GF-A6C9-06 20 51872633 51872633 C T TSHZ2 Missense_Mutation p.P879L 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 20 51873000 51873000 G A TSHZ2 Silent p.R1001R 0.12 TCGA-GF-A6C9-06 20 55748300 55748300 T G BMP7 Missense_Mutation p.N368H 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 20 56138689 56138689 G A PCK1 Silent p.G289G 0.10 TCGA-GF-A6C9-06 20 57245605 57245605 C T STX16 Silent p.F198F 0.14 TCGA-GF-A6C9-06 20 57428970 57428970 G A GNAS Missense_Mutation p.S217N 0.28 deleterious_low_confidence(0) unknown(0) TCGA-GF-A6C9-06 20 57766404 57766404 C T ZNF831 Silent p.A110A 0.19 TCGA-GF-A6C9-06 20 57767176 57767176 G A ZNF831 Missense_Mutation p.E368K 0.31 deleterious(0.01) possibly_damaging(0.631) TCGA-GF-A6C9-06 20 57767403 57767403 C T ZNF831 Silent p.P443P 0.14 TCGA-GF-A6C9-06 20 57768540 57768540 G A ZNF831 Silent p.R822R 0.21 TCGA-GF-A6C9-06 20 57829535 57829535 C T ZNF831 Missense_Mutation p.P1591S 0.21 tolerated(0.16) probably_damaging(0.928) TCGA-GF-A6C9-06 20 57829573 57829573 C T ZNF831 Silent p.V1603V 0.11 TCGA-GF-A6C9-06 20 58381187 58381187 C T PHACTR3 Silent p.F422F 0.08 TCGA-GF-A6C9-06 20 58587679 58587679 C T CDH26 Missense_Mutation p.S798F 0.24 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 20 5939209 5939209 A T MCM8 Missense_Mutation p.N209I 0.10 deleterious(0.03) benign(0.045) TCGA-GF-A6C9-06 20 60903023 60903023 G A LAMA5 Missense_Mutation p.P1566S 0.11 benign(0.024) TCGA-GF-A6C9-06 20 60904292 60904292 G A LAMA5 Silent p.V1379V 0.20 TCGA-GF-A6C9-06 20 60909298 60909298 G A LAMA5 Missense_Mutation p.P895S 0.17 benign(0.024) TCGA-GF-A6C9-06 20 61341149 61341149 C T NTSR1 Missense_Mutation p.A197V 0.12 tolerated(0.53) benign(0.012) TCGA-GF-A6C9-06 20 61458119 61458119 G A COL9A3 Missense_Mutation p.G247S 0.17 deleterious(0) unknown(0) TCGA-GF-A6C9-06 20 61511439 61511439 G A DIDO1 Missense_Mutation p.P1957S 0.23 possibly_damaging(0.507) TCGA-GF-A6C9-06 20 61834966 61834966 C T YTHDF1 Missense_Mutation p.G109E 0.17 deleterious(0) probably_damaging(0.984) TCGA-GF-A6C9-06 20 62193672 62193672 C A HELZ2 Silent p.L2122L 0.28 TCGA-GF-A6C9-06 20 62197148 62197148 G A HELZ2 Silent p.S1009S 0.18 TCGA-GF-A6C9-06 20 62223901 62223901 G A GMEB2 Missense_Mutation p.P272S 0.14 tolerated(0.1) possibly_damaging(0.908) TCGA-GF-A6C9-06 20 62370243 62370243 C A LIME1 Missense_Mutation p.S293Y 0.19 tolerated_low_confidence(0.23) unknown(0) TCGA-GF-A6C9-06 20 62370244 62370244 C T LIME1 Silent p.S293S 0.19 TCGA-GF-A6C9-06 20 62378355 62378355 C T ZBTB46 Silent p.K566K 0.15 TCGA-GF-A6C9-06 20 62724141 62724141 C T OPRL1 Missense_Mutation p.S23F 0.13 deleterious(0) possibly_damaging(0.577) TCGA-GF-A6C9-06 20 62904719 62904719 C T PCMTD2 Silent p.R284R 0.16 TCGA-GF-A6C9-06 20 6758996 6758996 C T BMP2 Nonsense_Mutation p.Q151* 0.10 TCGA-GF-A6C9-06 20 6759398 6759398 A G BMP2 Missense_Mutation p.K285E 0.24 tolerated(0.07) benign(0.009) TCGA-GF-A6C9-06 20 76685 76685 G A DEFB125 Missense_Mutation p.G33E 0.15 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 20 76939 76939 C T DEFB125 Missense_Mutation p.P118S 0.14 tolerated(0.41) possibly_damaging(0.857) TCGA-GF-A6C9-06 20 7866458 7866458 G A HAO1 Silent p.F289F 0.15 TCGA-GF-A6C9-06 20 865868 865868 G T ANGPT4 Missense_Mutation p.Q230K 0.38 deleterious(0) probably_damaging(0.947) TCGA-GF-A6C9-06 20 9404500 9404500 C T PLCB4 Nonsense_Mutation p.R797* 0.21 TCGA-GF-A6C9-06 20 9498814 9498814 G A LAMP5 Missense_Mutation p.M201I 0.13 tolerated(0.11) benign(0.006) TCGA-GF-A6C9-06 20 9525066 9525066 G A PAK7 Missense_Mutation p.P607S 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 21 10933880 10933880 G A TPTE Silent p.I333I 0.06 TCGA-GF-A6C9-06 21 11038913 11038913 G A BAGE2 RNA 0.04 TCGA-GF-A6C9-06 21 14983063 14983063 G A POTED Missense_Mutation p.E172K 0.09 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 21 17911453 17911453 C T MIR99A RNA 0.18 TCGA-GF-A6C9-06 21 19642411 19642411 C T TMPRSS15 Missense_Mutation p.E979K 0.07 deleterious(0.01) possibly_damaging(0.456) TCGA-GF-A6C9-06 21 19653460 19653460 G A TMPRSS15 Silent p.V855V 0.13 TCGA-GF-A6C9-06 21 19653485 19653485 G A TMPRSS15 Missense_Mutation p.S847L 0.07 tolerated(0.46) benign(0.027) TCGA-GF-A6C9-06 21 27121432 27121432 G A GABPA Splice_Site p.X103_splice 0.17 TCGA-GF-A6C9-06 21 28338293 28338293 G A ADAMTS5 Missense_Mutation p.P140S 0.14 tolerated(0.05) benign(0.036) TCGA-GF-A6C9-06 21 30325549 30325549 A C LTN1 Missense_Mutation p.L1123V 0.15 deleterious(0.04) benign(0.032) TCGA-GF-A6C9-06 21 30329731 30329731 G A LTN1 Missense_Mutation p.L985F 0.10 deleterious(0.05) probably_damaging(0.985) TCGA-GF-A6C9-06 21 30409701 30409701 C T USP16 Missense_Mutation p.P185S 0.11 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 21 30714787 30714787 A G BACH1 Missense_Mutation p.Q615R 0.21 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 21 31538771 31538771 G A CLDN17 Silent p.I55I 0.08 TCGA-GF-A6C9-06 21 33371038 33371038 C T HUNK Silent p.F562F 0.13 TCGA-GF-A6C9-06 21 35468343 35468343 C T SLC5A3 Silent p.I282I 0.17 TCGA-GF-A6C9-06 21 36080267 36080267 G A CLIC6 Missense_Mutation p.A504T 0.09 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 21 36421162 36421162 G A RUNX1 Missense_Mutation p.S12L 0.08 deleterious_low_confidence(0.03) benign(0.003) TCGA-GF-A6C9-06 21 39213010 39213010 T A KCNJ6 Intron 0.09 TCGA-GF-A6C9-06 21 39671594 39671594 G A KCNJ15 Silent p.E137E 0.14 TCGA-GF-A6C9-06 21 41447046 41447046 G A DSCAM Silent p.I1602I 0.10 TCGA-GF-A6C9-06 21 41457622 41457622 G A DSCAM Missense_Mutation p.R1347C 0.22 deleterious(0) probably_damaging(0.988) TCGA-GF-A6C9-06 21 41561099 41561099 C T DSCAM Missense_Mutation p.S808N 0.20 tolerated(0.97) benign(0.006) TCGA-GF-A6C9-06 21 43281849 43281849 G A PRDM15 Silent p.F238F 0.14 TCGA-GF-A6C9-06 21 43413826 43413826 G A ZBTB21 Missense_Mutation p.P127S 0.15 tolerated(0.07) benign(0.371) TCGA-GF-A6C9-06 21 43508592 43508592 T C UMODL1 Splice_Site p.X264_splice 0.14 TCGA-GF-A6C9-06 21 43833206 43833206 C T UBASH3A Missense_Mutation p.P143L 0.20 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 21 43833207 43833207 C T UBASH3A Silent p.P143P 0.20 TCGA-GF-A6C9-06 21 45811262 45811262 G A TRPM2 Nonsense_Mutation p.W516* 0.12 TCGA-GF-A6C9-06 21 45843610 45843610 G A TRPM2 Missense_Mutation p.E1182K 0.16 tolerated(0.06) benign(0.081) TCGA-GF-A6C9-06 21 45945579 45945579 C G TSPEAR Missense_Mutation p.E431D 0.10 tolerated(0.39) benign(0.11) TCGA-GF-A6C9-06 21 46306716 46306716 G A ITGB2 Missense_Mutation p.H728Y 0.19 tolerated(1) probably_damaging(0.972) TCGA-GF-A6C9-06 21 46951839 46951839 G A SLC19A1 Missense_Mutation p.S138F 0.23 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 21 47558817 47558817 C T FTCD Silent p.K427K 0.08 TCGA-GF-A6C9-06 22 17264924 17264924 C T XKR3 Nonsense_Mutation p.W322* 0.21 TCGA-GF-A6C9-06 22 17588656 17588656 C T IL17RA Missense_Mutation p.T362I 0.18 tolerated(0.18) benign(0.045) TCGA-GF-A6C9-06 22 18029085 18029085 C T CECR2 Missense_Mutation p.L1349F 0.13 deleterious_low_confidence(0.02) benign(0.128) TCGA-GF-A6C9-06 22 20891473 20891473 C T MED15 Silent p.F46F 0.16 TCGA-GF-A6C9-06 22 23135368 23135368 C T IGLV2-11 Missense_Mutation p.S77L 0.08 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-GF-A6C9-06 22 25024277 25024277 G A GGT1 Silent p.V495V 0.12 TCGA-GF-A6C9-06 22 25150135 25150135 C T PIWIL3 Missense_Mutation p.E275K 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 22 29957506 29957506 A G NIPSNAP1 Missense_Mutation p.Y190H 0.22 deleterious(0.02) possibly_damaging(0.87) TCGA-GF-A6C9-06 22 31091409 31091409 G A OSBP2 Silent p.T171T 0.25 TCGA-GF-A6C9-06 22 31301876 31301876 G A OSBP2 Missense_Mutation p.E810K 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 22 32849444 32849444 C T BPIFC Silent p.K57K 0.10 TCGA-GF-A6C9-06 22 36587467 36587467 C G APOL4 Missense_Mutation p.E237Q 0.12 tolerated(1) benign(0.372) TCGA-GF-A6C9-06 22 37771400 37771400 C T ELFN2 Missense_Mutation p.D59N 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 22 38038994 38038994 C T SH3BP1 Missense_Mutation p.P126L 0.20 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 22 38119321 38119321 G A TRIOBP Missense_Mutation p.R253Q 0.20 tolerated_low_confidence(0.13) benign(0.016) TCGA-GF-A6C9-06 22 38525476 38525476 A C PLA2G6 Missense_Mutation p.S391A 0.11 tolerated(0.97) benign(0.002) TCGA-GF-A6C9-06 22 39908029 39908029 C T MIEF1 Missense_Mutation p.T107I 0.17 tolerated(0.19) benign(0.001) TCGA-GF-A6C9-06 22 41677075 41677075 G A RANGAP1 5'UTR 0.15 TCGA-GF-A6C9-06 22 42043012 42043012 G A XRCC6 Missense_Mutation p.V296M 0.08 deleterious(0) probably_damaging(0.977) TCGA-GF-A6C9-06 22 42266899 42266899 G T SREBF2 Missense_Mutation p.V243F 0.12 tolerated(0.07) possibly_damaging(0.877) TCGA-GF-A6C9-06 22 43924792 43924792 C T EFCAB6 Missense_Mutation p.D1483N 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 22 44004410 44004410 C T EFCAB6 Missense_Mutation p.G878D 0.09 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 22 45278892 45278892 G A PHF21B 3'UTR 0.12 TCGA-GF-A6C9-06 22 45316359 45316359 C T PHF21B Silent p.T44T 0.22 TCGA-GF-A6C9-06 22 45972932 45972932 G A FBLN1 Missense_Mutation p.G639E 0.12 deleterious(0) probably_damaging(0.972) TCGA-GF-A6C9-06 22 50893818 50893818 C G SBF1 Silent p.L1463L 0.12 TCGA-GF-A6C9-06 22 50943284 50943284 C T LMF2 Missense_Mutation p.G462S 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-GF-A6C9-06 22 51064589 51064589 G A ARSA Silent p.I324I 0.38 TCGA-GF-A6C9-06 2 100627975 100627975 C T AFF3 Missense_Mutation p.A38T 0.07 tolerated_low_confidence(0.14) possibly_damaging(0.492) TCGA-GF-A6C9-06 2 102493494 102493494 G T MAP4K4 Missense_Mutation p.G946C 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 2 102793024 102793024 C T IL1R1 Silent p.F505F 0.14 TCGA-GF-A6C9-06 2 102992408 102992408 G A IL18R1 Silent p.T170T 0.30 TCGA-GF-A6C9-06 2 103040562 103040562 C T IL18RAP Missense_Mutation p.S121F 0.08 deleterious(0.01) benign(0.245) TCGA-GF-A6C9-06 2 103148966 103148966 G A SLC9A4 Missense_Mutation p.G739E 0.12 tolerated(1) benign(0.014) TCGA-GF-A6C9-06 2 103274201 103274201 C T SLC9A2 Silent p.F156F 0.10 TCGA-GF-A6C9-06 2 103322324 103322324 G A SLC9A2 Missense_Mutation p.R666Q 0.12 deleterious(0.04) possibly_damaging(0.801) TCGA-GF-A6C9-06 2 103378691 103378691 C T TMEM182 Silent p.I5I 0.24 TCGA-GF-A6C9-06 2 107040045 107040045 T A RGPD3 Missense_Mutation p.I1460F 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-GF-A6C9-06 2 107459985 107459985 A C ST6GAL2 Missense_Mutation p.F150C 0.14 benign(0.336) TCGA-GF-A6C9-06 2 107460096 107460096 G A ST6GAL2 Missense_Mutation p.S113L 0.09 benign(0.003) TCGA-GF-A6C9-06 2 108487198 108487198 G A RGPD4 Missense_Mutation p.G913E 0.09 deleterious_low_confidence(0.02) benign(0.222) TCGA-GF-A6C9-06 2 108488310 108488310 C T RGPD4 Missense_Mutation p.H1284Y 0.14 tolerated(0.17) benign(0.003) TCGA-GF-A6C9-06 2 108604621 108604621 C T SLC5A7 Missense_Mutation p.H4Y 0.14 deleterious(0.02) benign(0.004) TCGA-GF-A6C9-06 2 108609544 108609544 G A SLC5A7 Missense_Mutation p.G137R 0.14 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 2 108910702 108910702 G A SULT1C2 Missense_Mutation p.E57K 0.17 deleterious(0.01) possibly_damaging(0.599) TCGA-GF-A6C9-06 2 10927495 10927495 G A PDIA6 Missense_Mutation p.P357S 0.10 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 2 109378609 109378609 C T RANBP2 Silent p.S885S 0.08 TCGA-GF-A6C9-06 2 111399776 111399776 C T BUB1 Missense_Mutation p.E795K 0.10 deleterious(0) benign(0.356) TCGA-GF-A6C9-06 2 111430413 111430413 G A BUB1 Missense_Mutation p.H83Y 0.16 tolerated(1) possibly_damaging(0.801) TCGA-GF-A6C9-06 2 112944841 112944841 G A FBLN7 Missense_Mutation p.A360T 0.15 tolerated(0.19) probably_damaging(0.999) TCGA-GF-A6C9-06 2 113588049 113588049 G A IL1B Silent p.F233F 0.13 TCGA-GF-A6C9-06 2 113785692 113785692 C T IL36B Intron 0.17 TCGA-GF-A6C9-06 2 113786564 113786564 G A IL36B Silent p.L71L 0.08 TCGA-GF-A6C9-06 2 113786575 113786575 C T IL36B Missense_Mutation p.G68R 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.901) TCGA-GF-A6C9-06 2 113890349 113890349 C T IL1RN Silent p.F148F 0.18 TCGA-GF-A6C9-06 2 116593759 116593759 G A DPP10 Missense_Mutation p.M663I 0.18 tolerated(0.22) benign(0.333) TCGA-GF-A6C9-06 2 119600567 119600567 C T EN1 Missense_Mutation p.G376R 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 120385357 120385357 G A PCDP1 Missense_Mutation p.E549K 0.13 deleterious(0.01) benign(0.273) TCGA-GF-A6C9-06 2 1204906 1204906 G A SNTG2 Missense_Mutation p.E237K 0.13 deleterious(0.01) benign(0.055) TCGA-GF-A6C9-06 2 121743988 121743988 G A GLI2 Silent p.L697L 0.11 TCGA-GF-A6C9-06 2 125261885 125261885 C T CNTNAP5 Missense_Mutation p.S359F 0.22 deleterious(0.02) probably_damaging(0.935) TCGA-GF-A6C9-06 2 128051715 128051715 C T ERCC3 5'UTR 0.36 TCGA-GF-A6C9-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.08 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 2 130725890 130725890 C T RAB6C-AS1 RNA 0.15 TCGA-GF-A6C9-06 2 130832996 130832996 C T POTEF Silent p.V683V 0.28 TCGA-GF-A6C9-06 2 130951418 130951418 C T TUBA3E Missense_Mutation p.A333T 0.10 deleterious_low_confidence(0.04) benign(0.049) TCGA-GF-A6C9-06 2 130951656 130951656 C T TUBA3E Silent p.T253T 0.12 TCGA-GF-A6C9-06 2 131486883 131486883 C T GPR148 Silent p.F53F 0.17 TCGA-GF-A6C9-06 2 132289280 132289280 A G CCDC74A Silent p.S196S 0.42 TCGA-GF-A6C9-06 2 136567264 136567264 C T LCT Missense_Mutation p.E885K 0.10 deleterious(0.05) possibly_damaging(0.493) TCGA-GF-A6C9-06 2 137814720 137814720 G A THSD7B Silent p.S290S 0.11 TCGA-GF-A6C9-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.17 tolerated(0.66) probably_damaging(0.964) TCGA-GF-A6C9-06 2 137872796 137872796 G A THSD7B Silent p.G434G 0.20 TCGA-GF-A6C9-06 2 138169253 138169253 G A THSD7B Missense_Mutation p.D924N 0.18 tolerated(0.24) possibly_damaging(0.728) TCGA-GF-A6C9-06 2 138169329 138169329 G A THSD7B Missense_Mutation p.G949E 0.12 deleterious(0.02) probably_damaging(0.969) TCGA-GF-A6C9-06 2 138400076 138400076 G A THSD7B Missense_Mutation p.R1276Q 0.16 deleterious(0.01) unknown(0) TCGA-GF-A6C9-06 2 141079559 141079559 C T LRP1B Missense_Mutation p.G4205S 0.09 possibly_damaging(0.855) TCGA-GF-A6C9-06 2 141113970 141113970 G A LRP1B Missense_Mutation p.S3824F 0.19 possibly_damaging(0.485) TCGA-GF-A6C9-06 2 141122263 141122263 C T LRP1B Missense_Mutation p.G3700R 0.15 probably_damaging(0.988) TCGA-GF-A6C9-06 2 141128412 141128412 C T LRP1B Splice_Site p.X3626_splice 0.21 TCGA-GF-A6C9-06 2 141641515 141641515 C T LRP1B Missense_Mutation p.G1347E 0.12 benign(0.067) TCGA-GF-A6C9-06 2 141773416 141773416 C T LRP1B Nonsense_Mutation p.W680* 0.08 TCGA-GF-A6C9-06 2 152320385 152320385 C A RIF1 Missense_Mutation p.L1451I 0.23 tolerated(0.41) benign(0.005) TCGA-GF-A6C9-06 2 153471384 153471384 G A FMNL2 Missense_Mutation p.S361N 0.19 benign(0.316) TCGA-GF-A6C9-06 2 154996947 154996947 C T GALNT13 Silent p.I80I 0.12 TCGA-GF-A6C9-06 2 155157995 155157995 C T GALNT13 Missense_Mutation p.P350L 0.15 deleterious(0.01) possibly_damaging(0.864) TCGA-GF-A6C9-06 2 155566234 155566234 C T KCNJ3 Silent p.I274I 0.24 TCGA-GF-A6C9-06 2 155711610 155711610 G A KCNJ3 Missense_Mutation p.G431R 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 2 155711611 155711611 G A KCNJ3 Missense_Mutation p.G431E 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 2 158140822 158140822 C T GALNT5 Missense_Mutation p.L495F 0.08 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 2 163002090 163002090 C T GCG Missense_Mutation p.E118K 0.08 deleterious(0.03) probably_damaging(0.988) TCGA-GF-A6C9-06 2 163059452 163059452 C T FAP Missense_Mutation p.E385K 0.12 tolerated(0.47) possibly_damaging(0.472) TCGA-GF-A6C9-06 2 163250930 163250930 C T KCNH7 Silent p.R893R 0.12 TCGA-GF-A6C9-06 2 165353981 165353981 G A GRB14 Missense_Mutation p.S375F 0.10 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 2 165986573 165986573 G A SCN3A Silent p.F933F 0.15 TCGA-GF-A6C9-06 2 166532958 166532958 G A CSRNP3 Missense_Mutation p.R182Q 0.15 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 2 166848661 166848661 C T SCN1A Silent p.E1708E 0.13 TCGA-GF-A6C9-06 2 1670052 1670052 C T PXDN Missense_Mutation p.E409K 0.10 tolerated(0.82) benign(0.021) TCGA-GF-A6C9-06 2 167055847 167055847 C T SCN9A Missense_Mutation p.E1757K 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-GF-A6C9-06 2 167297987 167297987 G A SCN7A Silent p.T692T 0.15 TCGA-GF-A6C9-06 2 167322348 167322348 G A SCN7A Nonsense_Mutation p.Q272* 0.13 TCGA-GF-A6C9-06 2 16740833 16740833 C T FAM49A Silent p.T244T 0.23 TCGA-GF-A6C9-06 2 168099262 168099262 C T XIRP2 Missense_Mutation p.P454S 0.14 possibly_damaging(0.895) TCGA-GF-A6C9-06 2 168107493 168107493 C T XIRP2 Silent p.I3197I 0.11 TCGA-GF-A6C9-06 2 168115845 168115845 G A XIRP2 3'UTR 0.12 TCGA-GF-A6C9-06 2 168725715 168725715 C T B3GALT1 Nonsense_Mutation p.R56* 0.10 TCGA-GF-A6C9-06 2 169023840 169023840 T C STK39 Silent p.E133E 0.09 TCGA-GF-A6C9-06 2 169707602 169707602 G A NOSTRIN Silent p.L270L 0.10 TCGA-GF-A6C9-06 2 169792783 169792783 C T ABCB11 Missense_Mutation p.G924E 0.17 deleterious(0.01) possibly_damaging(0.558) TCGA-GF-A6C9-06 2 169792790 169792790 A G ABCB11 Silent p.L922L 0.16 TCGA-GF-A6C9-06 2 170103911 170103911 G A LRP2 Missense_Mutation p.S962L 0.07 benign(0.068) TCGA-GF-A6C9-06 2 172398102 172398102 C T CYBRD1 Silent p.I67I 0.10 TCGA-GF-A6C9-06 2 172725267 172725267 C T SLC25A12 Missense_Mutation p.G45R 0.10 tolerated(0.13) benign(0.019) TCGA-GF-A6C9-06 2 179399091 179399091 A G TTN Missense_Mutation p.V34084A 0.08 TCGA-GF-A6C9-06 2 179399747 179399747 G A TTN Silent p.S33865S 0.13 TCGA-GF-A6C9-06 2 179415913 179415913 C T TTN Missense_Mutation p.D30449N 0.18 TCGA-GF-A6C9-06 2 179418483 179418483 G A TTN Missense_Mutation p.S29750F 0.17 TCGA-GF-A6C9-06 2 179433873 179433873 G A TTN Silent p.I25662I 0.09 TCGA-GF-A6C9-06 2 179434129 179434129 C T TTN Missense_Mutation p.G25577E 0.15 TCGA-GF-A6C9-06 2 179434202 179434202 C T TTN Missense_Mutation p.D25553N 0.13 TCGA-GF-A6C9-06 2 179441463 179441463 C T TTN Missense_Mutation p.E23170K 0.15 TCGA-GF-A6C9-06 2 179444318 179444318 C T TTN Missense_Mutation p.E22536K 0.15 TCGA-GF-A6C9-06 2 179444693 179444693 C T TTN Missense_Mutation p.E22441K 0.10 TCGA-GF-A6C9-06 2 179452073 179452073 G A TTN Missense_Mutation p.P21289S 0.25 TCGA-GF-A6C9-06 2 179453442 179453442 C T TTN Missense_Mutation p.E21004K 0.11 TCGA-GF-A6C9-06 2 179457754 179457754 C T TTN Missense_Mutation p.D19698N 0.10 TCGA-GF-A6C9-06 2 179463349 179463349 C T TTN Missense_Mutation p.D18999N 0.20 TCGA-GF-A6C9-06 2 179472290 179472290 C T TTN Missense_Mutation p.E17709K 0.07 TCGA-GF-A6C9-06 2 179481580 179481580 C T TTN Silent p.K16012K 0.17 TCGA-GF-A6C9-06 2 179490104 179490104 C T TTN Missense_Mutation p.G14815E 0.07 TCGA-GF-A6C9-06 2 179498736 179498736 C T TTN Missense_Mutation p.E14164K 0.07 TCGA-GF-A6C9-06 2 179516835 179516835 G A TTN Missense_Mutation p.P13095S 0.08 TCGA-GF-A6C9-06 2 179534331 179534331 G A TTN Missense_Mutation p.P11820S 0.12 TCGA-GF-A6C9-06 2 179577272 179577272 C T TTN Missense_Mutation p.G9126E 0.17 TCGA-GF-A6C9-06 2 179577515 179577515 G A TTN Silent p.F9079F 0.31 TCGA-GF-A6C9-06 2 179577629 179577629 G A TTN Silent p.I9041I 0.16 TCGA-GF-A6C9-06 2 179586793 179586793 C T TTN Missense_Mutation p.D7533N 0.07 TCGA-GF-A6C9-06 2 179591944 179591944 C T TTN Missense_Mutation p.M6716I 0.09 TCGA-GF-A6C9-06 2 179594433 179594433 C T TTN Missense_Mutation p.D6183N 0.21 TCGA-GF-A6C9-06 2 179595880 179595880 C T TTN Missense_Mutation p.D5838N 0.12 TCGA-GF-A6C9-06 2 179596871 179596871 C T TTN Missense_Mutation p.E5609K 0.21 TCGA-GF-A6C9-06 2 179597016 179597016 G A TTN Silent p.A5560A 0.10 TCGA-GF-A6C9-06 2 179597992 179597992 G A TTN Missense_Mutation p.S5343F 0.10 TCGA-GF-A6C9-06 2 179604841 179604841 C T TTN Silent p.Q4373Q 0.12 TCGA-GF-A6C9-06 2 179612649 179612649 G A TTN Intron 0.17 TCGA-GF-A6C9-06 2 179612743 179612743 G A TTN Intron 0.23 TCGA-GF-A6C9-06 2 179614724 179614724 G A TTN Intron 0.18 TCGA-GF-A6C9-06 2 179621214 179621214 G A TTN Silent p.F3663F 0.10 TCGA-GF-A6C9-06 2 179633550 179633550 C T TTN Missense_Mutation p.G3005S 0.15 TCGA-GF-A6C9-06 2 179634791 179634791 C T TTN Silent p.V2879V 0.11 TCGA-GF-A6C9-06 2 179635952 179635952 T C TTN Missense_Mutation p.K2701R 0.20 TCGA-GF-A6C9-06 2 179639094 179639094 C T TTN Nonsense_Mutation p.W2299* 0.22 TCGA-GF-A6C9-06 2 179639119 179639119 G A TTN Missense_Mutation p.S2291F 0.17 TCGA-GF-A6C9-06 2 179641608 179641608 G A TTN Silent p.I1661I 0.11 TCGA-GF-A6C9-06 2 179659747 179659747 G A TTN Nonsense_Mutation p.Q383* 0.09 TCGA-GF-A6C9-06 2 179666930 179666930 C T TTN Missense_Mutation p.R77Q 0.13 TCGA-GF-A6C9-06 2 179702223 179702223 G A CCDC141 Silent p.S1241S 0.13 TCGA-GF-A6C9-06 2 179720109 179720109 C T CCDC141 Missense_Mutation p.D1009N 0.25 tolerated(0.09) benign(0.22) TCGA-GF-A6C9-06 2 179732822 179732822 G A CCDC141 Silent p.A835A 0.16 TCGA-GF-A6C9-06 2 182322478 182322478 C T ITGA4 Missense_Mutation p.P33S 0.14 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 2 182543237 182543237 C T NEUROD1 Silent p.L117L 0.11 TCGA-GF-A6C9-06 2 185800935 185800935 C T ZNF804A Missense_Mutation p.S271F 0.12 tolerated(0.18) probably_damaging(0.986) TCGA-GF-A6C9-06 2 185803561 185803561 C T ZNF804A Silent p.L1146L 0.12 TCGA-GF-A6C9-06 2 186672439 186672439 G A FSIP2 Missense_Mutation p.G6225R 0.10 probably_damaging(0.976) TCGA-GF-A6C9-06 2 189850466 189850466 C T COL3A1 Missense_Mutation p.P137S 0.24 unknown(0) TCGA-GF-A6C9-06 2 189874978 189874978 G A COL3A1 Missense_Mutation p.E1300K 0.12 unknown(0) TCGA-GF-A6C9-06 2 189875434 189875434 C T COL3A1 Nonsense_Mutation p.R1358* 0.07 TCGA-GF-A6C9-06 2 189910551 189910551 C T COL5A2 Missense_Mutation p.G1095E 0.11 unknown(0) TCGA-GF-A6C9-06 2 189916093 189916093 G A COL5A2 Missense_Mutation p.P962S 0.09 unknown(0) TCGA-GF-A6C9-06 2 190569915 190569915 G A ANKAR Silent p.K625K 0.11 TCGA-GF-A6C9-06 2 191231568 191231568 C T INPP1 Missense_Mutation p.S138F 0.10 deleterious(0.01) possibly_damaging(0.522) TCGA-GF-A6C9-06 2 1914070 1914070 C T MYT1L Missense_Mutation p.E585K 0.09 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 2 192711701 192711701 G A SDPR 5'UTR 0.21 TCGA-GF-A6C9-06 2 192863813 192863813 C T TMEFF2 Missense_Mutation p.E220K 0.18 deleterious(0.04) possibly_damaging(0.489) TCGA-GF-A6C9-06 2 196749533 196749533 C T DNAH7 Missense_Mutation p.G1847S 0.13 tolerated(0.12) possibly_damaging(0.45) TCGA-GF-A6C9-06 2 196759922 196759922 C A DNAH7 Silent p.G1558G 0.09 TCGA-GF-A6C9-06 2 196759924 196759924 C T DNAH7 Missense_Mutation p.G1558R 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-GF-A6C9-06 2 196852734 196852734 C T DNAH7 Missense_Mutation p.E525K 0.27 tolerated(0.75) benign(0.013) TCGA-GF-A6C9-06 2 201399743 201399743 C T SGOL2 Missense_Mutation p.S53F 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 203807494 203807494 C T CARF Missense_Mutation p.S37F 0.23 deleterious_low_confidence(0.02) probably_damaging(0.957) TCGA-GF-A6C9-06 2 20458106 20458106 G A PUM2 Silent p.A794A 0.30 TCGA-GF-A6C9-06 2 206023508 206023508 C T PARD3B Intron 0.16 TCGA-GF-A6C9-06 2 206023511 206023511 C T PARD3B Intron 0.17 TCGA-GF-A6C9-06 2 206165277 206165277 C T PARD3B Missense_Mutation p.P675S 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 207041960 207041960 C T GPR1 Silent p.L4L 0.11 TCGA-GF-A6C9-06 2 207408038 207408038 G A ADAM23 Missense_Mutation p.E240K 0.12 tolerated(0.48) benign(0.077) TCGA-GF-A6C9-06 2 209308124 209308124 C T PTH2R Silent p.F187F 0.17 TCGA-GF-A6C9-06 2 209309566 209309566 C T PTH2R Silent p.F269F 0.17 TCGA-GF-A6C9-06 2 210560825 210560825 T G MAP2 Missense_Mutation p.F1311V 0.07 deleterious(0) probably_damaging(0.937) TCGA-GF-A6C9-06 2 21225764 21225764 C T APOB Missense_Mutation p.R4177Q 0.22 benign(0.001) TCGA-GF-A6C9-06 2 21229845 21229845 G A APOB Silent p.L3299L 0.22 TCGA-GF-A6C9-06 2 21231930 21231930 G A APOB Missense_Mutation p.L2604F 0.16 probably_damaging(0.997) TCGA-GF-A6C9-06 2 21232178 21232178 T C APOB Missense_Mutation p.D2521G 0.21 probably_damaging(0.996) TCGA-GF-A6C9-06 2 21233187 21233187 T G APOB Missense_Mutation p.I2185L 0.27 probably_damaging(0.952) TCGA-GF-A6C9-06 2 21234337 21234337 C T APOB Silent p.L1801L 0.06 TCGA-GF-A6C9-06 2 21236260 21236260 G A APOB Silent p.L1330L 0.08 TCGA-GF-A6C9-06 2 212426678 212426678 C T ERBB4 Missense_Mutation p.D813N 0.10 deleterious(0.01) possibly_damaging(0.555) TCGA-GF-A6C9-06 2 21252650 21252650 C T APOB Missense_Mutation p.G493E 0.19 probably_damaging(1) TCGA-GF-A6C9-06 2 21252853 21252853 G A APOB Silent p.L463L 0.08 TCGA-GF-A6C9-06 2 212570074 212570074 C T ERBB4 Silent p.L389L 0.07 TCGA-GF-A6C9-06 2 21265251 21265251 G A APOB Silent p.A73A 0.18 TCGA-GF-A6C9-06 2 215278855 215278855 C T VWC2L 5'UTR 0.23 TCGA-GF-A6C9-06 2 215843681 215843681 G A ABCA12 Silent p.L1608L 0.17 TCGA-GF-A6C9-06 2 216964685 216964685 C T TMEM169 Missense_Mutation p.T105I 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 2 216965075 216965075 C T TMEM169 Missense_Mutation p.S235L 0.15 deleterious(0.03) benign(0.041) TCGA-GF-A6C9-06 2 217724400 217724400 G A TNP1 Missense_Mutation p.S53F 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GF-A6C9-06 2 218925402 218925402 C T CXCR2P1 RNA 0.08 TCGA-GF-A6C9-06 2 219028987 219028987 G A CXCR1 Silent p.F316F 0.20 TCGA-GF-A6C9-06 2 219029451 219029451 C G CXCR1 Missense_Mutation p.G162R 0.18 tolerated(0.29) benign(0.396) TCGA-GF-A6C9-06 2 219029524 219029524 C T CXCR1 Silent p.L137L 0.16 TCGA-GF-A6C9-06 2 219362824 219362824 G A USP37 Missense_Mutation p.S361L 0.29 deleterious(0) probably_damaging(0.969) TCGA-GF-A6C9-06 2 219618942 219618942 C T TTLL4 Missense_Mutation p.P1144S 0.09 tolerated_low_confidence(0.26) benign(0.005) TCGA-GF-A6C9-06 2 220161714 220161714 G A PTPRN Silent p.F743F 0.07 TCGA-GF-A6C9-06 2 220422626 220422626 G A OBSL1 Missense_Mutation p.P1237S 0.15 tolerated(0.62) benign(0.41) TCGA-GF-A6C9-06 2 225338920 225338920 G A CUL3 3'UTR 0.14 TCGA-GF-A6C9-06 2 226446683 226446683 G A NYAP2 Missense_Mutation p.D184N 0.19 tolerated(0.07) probably_damaging(1) TCGA-GF-A6C9-06 2 227953439 227953439 C T COL4A4 Missense_Mutation p.G518E 0.10 probably_damaging(0.993) TCGA-GF-A6C9-06 2 227953440 227953440 C T COL4A4 Missense_Mutation p.G518R 0.10 probably_damaging(0.995) TCGA-GF-A6C9-06 2 227963478 227963478 C T COL4A4 Missense_Mutation p.G379E 0.13 probably_damaging(0.993) TCGA-GF-A6C9-06 2 228128547 228128547 G A COL4A3 Missense_Mutation p.G401E 0.16 probably_damaging(1) TCGA-GF-A6C9-06 2 228860230 228860230 G A SPHKAP Silent p.S1543S 0.09 TCGA-GF-A6C9-06 2 228881963 228881963 C T SPHKAP Missense_Mutation p.E1203K 0.10 deleterious(0.01) possibly_damaging(0.852) TCGA-GF-A6C9-06 2 228883439 228883439 G A SPHKAP Nonsense_Mutation p.Q711* 0.07 TCGA-GF-A6C9-06 2 228884261 228884261 C T SPHKAP Missense_Mutation p.D437N 0.08 tolerated(0.1) benign(0.103) TCGA-GF-A6C9-06 2 230253056 230253056 C T DNER Missense_Mutation p.G594R 0.07 deleterious(0) probably_damaging(0.92) TCGA-GF-A6C9-06 2 232325244 232325244 C T NCL Silent p.K281K 0.10 TCGA-GF-A6C9-06 2 233898927 233898927 C T NEU2 Silent p.F101F 0.09 TCGA-GF-A6C9-06 2 234072391 234072391 C T INPP5D Missense_Mutation p.L415F 0.24 deleterious(0.04) probably_damaging(0.986) TCGA-GF-A6C9-06 2 234113004 234113004 C T INPP5D Missense_Mutation p.R1058C 0.12 tolerated_low_confidence(0.07) benign(0.003) TCGA-GF-A6C9-06 2 234580813 234580813 C T UGT1A9 Missense_Mutation p.S78L 0.11 deleterious(0.02) benign(0.013) TCGA-GF-A6C9-06 2 234601647 234601647 C T UGT1A6 5'UTR 0.10 TCGA-GF-A6C9-06 2 234638226 234638226 G A UGT1A3 Missense_Mutation p.D152N 0.06 deleterious(0.01) possibly_damaging(0.874) TCGA-GF-A6C9-06 2 234652078 234652078 G A UGT1A10 Intron 0.23 TCGA-GF-A6C9-06 2 234750118 234750118 G A HJURP Silent p.I436I 0.12 TCGA-GF-A6C9-06 2 234750388 234750388 A T HJURP Silent p.V346V 0.08 TCGA-GF-A6C9-06 2 236706463 236706463 C T AGAP1 Missense_Mutation p.S245L 0.18 deleterious(0) probably_damaging(0.974) TCGA-GF-A6C9-06 2 238285466 238285466 G A COL6A3 Missense_Mutation p.P1007S 0.13 benign(0.402) TCGA-GF-A6C9-06 2 239079612 239079612 G A ILKAP Missense_Mutation p.A337V 0.08 tolerated(0.14) possibly_damaging(0.823) TCGA-GF-A6C9-06 2 241555870 241555870 C T GPR35 5'UTR 0.15 TCGA-GF-A6C9-06 2 242149960 242149960 C T ANO7 Silent p.S566S 0.10 TCGA-GF-A6C9-06 2 242206224 242206224 G A HDLBP Missense_Mutation p.P21S 0.08 tolerated_low_confidence(0.65) benign(0.004) TCGA-GF-A6C9-06 2 242684291 242684291 C T D2HGDH Silent p.L284L 0.19 TCGA-GF-A6C9-06 2 242757526 242757526 G A NEU4 Missense_Mutation p.D216N 0.25 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 242794829 242794829 G A PDCD1 Missense_Mutation p.S127F 0.12 tolerated(0.51) possibly_damaging(0.579) TCGA-GF-A6C9-06 2 24285927 24285927 C T FKBP1B Intron 0.09 TCGA-GF-A6C9-06 2 26179268 26179268 G A KIF3C Missense_Mutation p.H531Y 0.14 probably_damaging(0.979) TCGA-GF-A6C9-06 2 27478065 27478065 G A SLC30A3 3'UTR 0.16 TCGA-GF-A6C9-06 2 27560311 27560311 A C GTF3C2 Intron 0.26 TCGA-GF-A6C9-06 2 27850155 27850155 C T CCDC121 Missense_Mutation p.R333K 0.09 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 2 280041 280041 T G FAM150B 3'UTR 0.10 TCGA-GF-A6C9-06 2 29255914 29255914 G A FAM179A Silent p.Q709Q 0.25 TCGA-GF-A6C9-06 2 29404629 29404629 G A CLIP4 Missense_Mutation p.G663E 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 31167798 31167798 C T GALNT14 Nonsense_Mutation p.W256* 0.19 TCGA-GF-A6C9-06 2 31598279 31598279 G A XDH Silent p.V523V 0.18 TCGA-GF-A6C9-06 2 31637491 31637491 C T XDH Silent p.K14K 0.07 TCGA-GF-A6C9-06 2 32475892 32475892 G A NLRC4 Silent p.I347I 0.15 TCGA-GF-A6C9-06 2 32724999 32724999 G A BIRC6 Missense_Mutation p.D2952N 0.10 benign(0.154) TCGA-GF-A6C9-06 2 32983440 32983440 C T TTC27 Missense_Mutation p.H512Y 0.08 tolerated(0.43) benign(0.006) TCGA-GF-A6C9-06 2 33412096 33412096 C T LTBP1 Missense_Mutation p.H459Y 0.18 deleterious(0) possibly_damaging(0.864) TCGA-GF-A6C9-06 2 33745632 33745632 G A RASGRP3 Silent p.L83L 0.18 TCGA-GF-A6C9-06 2 3687900 3687900 C T COLEC11 Missense_Mutation p.P117S 0.12 tolerated(0.25) possibly_damaging(0.767) TCGA-GF-A6C9-06 2 37035977 37035977 T G VIT Missense_Mutation p.S584R 0.20 deleterious(0.01) benign(0.315) TCGA-GF-A6C9-06 2 37283664 37283664 G A HEATR5B Missense_Mutation p.P773L 0.10 deleterious(0) probably_damaging(0.945) TCGA-GF-A6C9-06 2 37543402 37543402 A C PRKD3 Missense_Mutation p.V89G 0.11 deleterious(0) benign(0.045) TCGA-GF-A6C9-06 2 37543403 37543403 C A PRKD3 Missense_Mutation p.V89L 0.12 deleterious(0.03) benign(0.002) TCGA-GF-A6C9-06 2 39492447 39492447 A G MAP4K3 Missense_Mutation p.V678A 0.10 tolerated(0.82) probably_damaging(0.996) TCGA-GF-A6C9-06 2 39964115 39964115 G A THUMPD2 Silent p.I424I 0.18 TCGA-GF-A6C9-06 2 40392048 40392048 G A SLC8A1 Silent p.I705I 0.11 TCGA-GF-A6C9-06 2 40655635 40655635 C T SLC8A1 Missense_Mutation p.E596K 0.15 tolerated(0.16) possibly_damaging(0.904) TCGA-GF-A6C9-06 2 40656677 40656677 G A SLC8A1 Silent p.F248F 0.10 TCGA-GF-A6C9-06 2 44174915 44174915 C T LRPPRC Splice_Site p.X641_splice 0.11 TCGA-GF-A6C9-06 2 46986972 46986972 C T SOCS5 Missense_Mutation p.H435Y 0.15 deleterious(0.02) probably_damaging(0.979) TCGA-GF-A6C9-06 2 47702402 47702402 C T MSH2 Silent p.I666I 0.10 TCGA-GF-A6C9-06 2 48808564 48808564 C T STON1-GTF2A1L Silent p.P264P 0.10 TCGA-GF-A6C9-06 2 48809342 48809342 G A STON1-GTF2A1L Missense_Mutation p.D524N 0.18 tolerated(0.42) benign(0.077) TCGA-GF-A6C9-06 2 48915058 48915058 G A LHCGR Silent p.F626F 0.11 TCGA-GF-A6C9-06 2 50765707 50765707 C T NRXN1 Silent p.L649L 0.10 TCGA-GF-A6C9-06 2 55253991 55253991 T C RTN4 Missense_Mutation p.N415S 0.08 deleterious(0.04) benign(0.002) TCGA-GF-A6C9-06 2 60773233 60773233 G A BCL11A Silent p.S86S 0.15 TCGA-GF-A6C9-06 2 61021871 61021871 G A PAPOLG Silent p.K672K 0.10 TCGA-GF-A6C9-06 2 65541250 65541250 G A SPRED2 Silent p.I214I 0.19 TCGA-GF-A6C9-06 2 69053129 69053129 G A ARHGAP25 Missense_Mutation p.E582K 0.14 tolerated(0.13) possibly_damaging(0.721) TCGA-GF-A6C9-06 2 69472545 69472545 C T ANTXR1 Silent p.P541P 0.31 TCGA-GF-A6C9-06 2 71886027 71886027 C T DYSF Missense_Mutation p.P1592L 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-GF-A6C9-06 2 74386227 74386227 G A MOB1A Silent p.F188F 0.06 TCGA-GF-A6C9-06 2 74477501 74477501 C T SLC4A5 Missense_Mutation p.G541E 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 2 74597754 74597754 C T DCTN1 Missense_Mutation p.E348K 0.11 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 2 74699804 74699804 G A MRPL53 5'UTR 0.16 TCGA-GF-A6C9-06 2 74834197 74834197 C T M1AP Missense_Mutation p.D194N 0.10 deleterious(0.03) benign(0.221) TCGA-GF-A6C9-06 2 74884979 74884979 G A SEMA4F Splice_Site p.X120_splice 0.08 TCGA-GF-A6C9-06 2 75278321 75278321 C T TACR1 Intron 0.13 TCGA-GF-A6C9-06 2 75425860 75425860 C T TACR1 Silent p.T67T 0.15 TCGA-GF-A6C9-06 2 75425885 75425885 G A TACR1 Missense_Mutation p.A59V 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 2 79971566 79971566 G A CTNNA2 Silent p.G52G 0.14 TCGA-GF-A6C9-06 2 80874886 80874886 G A CTNNA2 Silent p.V869V 0.11 TCGA-GF-A6C9-06 2 84652723 84652723 G A SUCLG1 Missense_Mutation p.P277L 0.17 tolerated_low_confidence(0.06) benign(0.018) TCGA-GF-A6C9-06 2 84652724 84652724 G A SUCLG1 Missense_Mutation p.P277S 0.17 tolerated_low_confidence(0.28) benign(0.005) TCGA-GF-A6C9-06 2 86434390 86434390 C G MRPL35 Silent p.T106T 0.11 TCGA-GF-A6C9-06 2 86697493 86697493 G A KDM3A Silent p.K562K 0.18 TCGA-GF-A6C9-06 2 86697494 86697494 G A KDM3A Missense_Mutation p.D563N 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-GF-A6C9-06 2 86831042 86831042 A T RNF103 Missense_Mutation p.V661D 0.09 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 2 86839375 86839375 G A RNF103 Missense_Mutation p.P130L 0.13 deleterious(0.02) benign(0.319) TCGA-GF-A6C9-06 2 89246904 89246904 G A IGKV1-5 Missense_Mutation p.S89F 0.09 deleterious(0.02) benign(0.168) TCGA-GF-A6C9-06 2 89442310 89442310 G A IGKV3-20 Missense_Mutation p.S32F 0.20 deleterious(0.01) possibly_damaging(0.875) TCGA-GF-A6C9-06 2 89987011 89987011 C T IGKV2D-29 Silent p.L98L 0.13 TCGA-GF-A6C9-06 2 96581894 96581894 C A ANKRD36C Missense_Mutation p.L791F 0.15 tolerated_low_confidence(0.2) possibly_damaging(0.598) TCGA-GF-A6C9-06 2 96581895 96581895 A G ANKRD36C Missense_Mutation p.L791S 0.14 tolerated_low_confidence(0.18) possibly_damaging(0.598) TCGA-GF-A6C9-06 2 96795638 96795638 G A ASTL Silent p.L267L 0.11 TCGA-GF-A6C9-06 2 96953255 96953255 G A SNRNP200 Missense_Mutation p.P1136S 0.10 tolerated(0.12) probably_damaging(0.964) TCGA-GF-A6C9-06 2 97531235 97531236 CT A SEMA4C Frame_Shift_Del p.E153Dfs*49 0.23 TCGA-GF-A6C9-06 3 100348538 100348538 G A GPR128 Missense_Mutation p.G71E 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 100568928 100568928 C T ABI3BP Missense_Mutation p.E446K 0.16 tolerated(0.85) benign(0.292) TCGA-GF-A6C9-06 3 101395684 101395684 G A ZBTB11 Silent p.T25T 0.23 TCGA-GF-A6C9-06 3 10312174 10312174 C T TATDN2 Silent p.A436A 0.18 TCGA-GF-A6C9-06 3 10312264 10312264 A G TATDN2 Silent p.Q466Q 0.12 TCGA-GF-A6C9-06 3 10391870 10391870 C T ATP2B2 Missense_Mutation p.R777Q 0.14 tolerated(0.28) possibly_damaging(0.821) TCGA-GF-A6C9-06 3 10419994 10419994 C T ATP2B2 Silent p.K381K 0.09 TCGA-GF-A6C9-06 3 105377928 105377928 G A CBLB Silent p.A945A 0.20 TCGA-GF-A6C9-06 3 105421053 105421053 G A CBLB Missense_Mutation p.P615L 0.06 tolerated_low_confidence(0.26) benign(0.289) TCGA-GF-A6C9-06 3 105421075 105421075 G A CBLB Nonsense_Mutation p.R608* 0.08 TCGA-GF-A6C9-06 3 108070694 108070694 A C HHLA2 Missense_Mutation p.I12L 0.15 tolerated(0.07) benign(0.026) TCGA-GF-A6C9-06 3 108182039 108182039 C T MYH15 Missense_Mutation p.E615K 0.17 deleterious(0.01) possibly_damaging(0.654) TCGA-GF-A6C9-06 3 108219036 108219036 C T MYH15 Missense_Mutation p.G162E 0.11 deleterious(0) possibly_damaging(0.801) TCGA-GF-A6C9-06 3 108220569 108220569 C T MYH15 Nonsense_Mutation p.W130* 0.27 TCGA-GF-A6C9-06 3 108474535 108474535 G A RETNLB 3'UTR 0.17 TCGA-GF-A6C9-06 3 108474693 108474693 C T RETNLB Missense_Mutation p.E90K 0.12 tolerated(0.12) benign(0.104) TCGA-GF-A6C9-06 3 108672604 108672604 C T GUCA1C Silent p.G2G 0.17 TCGA-GF-A6C9-06 3 108672665 108672665 G A GUCA1C 5'UTR 0.10 TCGA-GF-A6C9-06 3 108723687 108723687 C T MORC1 Missense_Mutation p.E688K 0.15 tolerated_low_confidence(0.59) benign(0.002) TCGA-GF-A6C9-06 3 108833269 108833269 G A MORC1 Silent p.F27F 0.27 TCGA-GF-A6C9-06 3 109050778 109050778 C T DPPA4 Silent p.L93L 0.09 TCGA-GF-A6C9-06 3 111286466 111286466 C T CD96 Missense_Mutation p.S172L 0.23 tolerated(0.2) benign(0.012) TCGA-GF-A6C9-06 3 112564709 112564709 C T CD200R1L 5'UTR 0.50 TCGA-GF-A6C9-06 3 113169282 113169282 G A SPICE1 Missense_Mutation p.R742C 0.22 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 3 113376431 113376431 G A KIAA2018 Silent p.T1366T 0.24 TCGA-GF-A6C9-06 3 113723471 113723471 G A KIAA1407 Intron 0.21 TCGA-GF-A6C9-06 3 113784098 113784098 C T QTRTD1 Silent p.S10S 0.20 TCGA-GF-A6C9-06 3 113890711 113890711 G A DRD3 Silent p.I43I 0.16 TCGA-GF-A6C9-06 3 118621577 118621577 G A IGSF11 Silent p.T362T 0.17 TCGA-GF-A6C9-06 3 119099807 119099807 C T ARHGAP31 Silent p.I135I 0.11 TCGA-GF-A6C9-06 3 119133051 119133051 C T ARHGAP31 Missense_Mutation p.P759S 0.21 tolerated(0.15) benign(0.017) TCGA-GF-A6C9-06 3 119134262 119134262 C T ARHGAP31 Silent p.P1162P 0.23 TCGA-GF-A6C9-06 3 119222391 119222391 C T TIMMDC1 Missense_Mutation p.R125C 0.33 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 3 119631622 119631622 G A GSK3B Missense_Mutation p.S215L 0.11 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 3 120369647 120369647 G A HGD Silent p.F136F 0.11 TCGA-GF-A6C9-06 3 120760603 120760603 T C STXBP5L Missense_Mutation p.L115P 0.21 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 3 121304943 121304943 C T ARGFX Silent p.I148I 0.15 TCGA-GF-A6C9-06 3 121304984 121304984 C T ARGFX Missense_Mutation p.S162F 0.14 deleterious(0) benign(0.246) TCGA-GF-A6C9-06 3 121341549 121341549 G A FBXO40 Missense_Mutation p.D425N 0.17 tolerated(0.06) probably_damaging(1) TCGA-GF-A6C9-06 3 121341976 121341976 G A FBXO40 Missense_Mutation p.G567E 0.26 tolerated(0.36) benign(0.037) TCGA-GF-A6C9-06 3 121350723 121350723 G A HCLS1 Silent p.F477F 0.16 TCGA-GF-A6C9-06 3 121712163 121712163 G A ILDR1 Missense_Mutation p.S478F 0.10 deleterious(0) possibly_damaging(0.642) TCGA-GF-A6C9-06 3 121712468 121712468 G A ILDR1 Silent p.F376F 0.08 TCGA-GF-A6C9-06 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.09 tolerated(0.24) benign(0.003) TCGA-GF-A6C9-06 3 121822543 121822543 G A CD86 Missense_Mutation p.M83I 0.21 tolerated(0.34) benign(0.009) TCGA-GF-A6C9-06 3 121838367 121838367 G A CD86 Missense_Mutation p.D326N 0.24 tolerated(0.42) unknown(0) TCGA-GF-A6C9-06 3 121973135 121973135 C T CASR Silent p.I33I 0.08 TCGA-GF-A6C9-06 3 121994790 121994790 C T CASR Silent p.I503I 0.20 TCGA-GF-A6C9-06 3 122003249 122003249 C T CASR Silent p.I826I 0.14 TCGA-GF-A6C9-06 3 123046465 123046465 C T ADCY5 Silent p.R649R 0.10 TCGA-GF-A6C9-06 3 123046501 123046501 G A ADCY5 Silent p.I637I 0.10 TCGA-GF-A6C9-06 3 123987921 123987921 G A KALRN Missense_Mutation p.G261D 0.21 deleterious(0.04) benign(0.185) TCGA-GF-A6C9-06 3 124393491 124393491 G T KALRN 3'UTR 0.25 TCGA-GF-A6C9-06 3 124692605 124692605 G A HEG1 Silent p.N1322N 0.09 TCGA-GF-A6C9-06 3 125734348 125734348 G A SLC41A3 Missense_Mutation p.P320L 0.07 tolerated(0.07) probably_damaging(0.997) TCGA-GF-A6C9-06 3 125824732 125824732 C T ALDH1L1 Silent p.T840T 0.23 TCGA-GF-A6C9-06 3 127703170 127703170 G A KBTBD12 3'UTR 0.22 TCGA-GF-A6C9-06 3 127785858 127785858 C T SEC61A1 Missense_Mutation p.P280L 0.08 deleterious(0.04) benign(0.401) TCGA-GF-A6C9-06 3 12859274 12859274 C T CAND2 Missense_Mutation p.A948V 0.08 tolerated(0.26) benign(0.021) TCGA-GF-A6C9-06 3 129247543 129247543 G A RHO 5'UTR 0.26 TCGA-GF-A6C9-06 3 130159091 130159091 A T COL6A5 Missense_Mutation p.N1970I 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-GF-A6C9-06 3 130744046 130744046 A C ASTE1 Silent p.L35L 0.26 TCGA-GF-A6C9-06 3 130893645 130893645 C T NEK11 Intron 0.20 TCGA-GF-A6C9-06 3 131271333 131271333 G A CPNE4 Silent p.V373V 0.09 TCGA-GF-A6C9-06 3 131404772 131404772 C T CPNE4 Missense_Mutation p.E180K 0.22 deleterious(0.02) benign(0.378) TCGA-GF-A6C9-06 3 132036382 132036382 C T ACPP Nonsense_Mutation p.R28* 0.17 TCGA-GF-A6C9-06 3 132403493 132403493 C A NPHP3 Nonsense_Mutation p.E1159* 0.24 TCGA-GF-A6C9-06 3 133119308 133119308 A T BFSP2 Missense_Mutation p.Q127H 0.10 deleterious(0.03) benign(0.082) TCGA-GF-A6C9-06 3 133494306 133494306 C T TF Silent p.L573L 0.25 TCGA-GF-A6C9-06 3 134322265 134322265 C T KY 3'UTR 0.26 TCGA-GF-A6C9-06 3 134322528 134322528 C T KY Missense_Mutation p.G627R 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 134911575 134911575 C T EPHB1 Silent p.I680I 0.13 TCGA-GF-A6C9-06 3 135720723 135720723 C T PPP2R3A Missense_Mutation p.S128F 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GF-A6C9-06 3 137981270 137981270 C T NME9 3'UTR 0.18 TCGA-GF-A6C9-06 3 139171923 139171923 G A RBP2 3'UTR 0.22 TCGA-GF-A6C9-06 3 139180971 139180971 C T RBP2 Missense_Mutation p.D79N 0.10 deleterious(0) probably_damaging(0.975) TCGA-GF-A6C9-06 3 139297845 139297845 C T NMNAT3 Silent p.G17G 0.16 TCGA-GF-A6C9-06 3 140282887 140282887 G T CLSTN2 Missense_Mutation p.R856L 0.08 deleterious(0.01) possibly_damaging(0.701) TCGA-GF-A6C9-06 3 140401788 140401788 G C TRIM42 Missense_Mutation p.V276L 0.14 tolerated(0.16) benign(0.008) TCGA-GF-A6C9-06 3 140866065 140866065 C T SPSB4 Missense_Mutation p.S259F 0.30 deleterious(0.04) possibly_damaging(0.482) TCGA-GF-A6C9-06 3 140866079 140866079 C T SPSB4 Nonsense_Mutation p.Q264* 0.20 TCGA-GF-A6C9-06 3 1414074 1414074 C T CNTN6 Silent p.S528S 0.14 TCGA-GF-A6C9-06 3 142539804 142539804 C T PCOLCE2 Missense_Mutation p.G345R 0.18 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 3 142741801 142741801 C T U2SURP Silent p.P375P 0.15 TCGA-GF-A6C9-06 3 143371182 143371182 G A SLC9A9 Missense_Mutation p.H224Y 0.24 tolerated(0.06) possibly_damaging(0.828) TCGA-GF-A6C9-06 3 148459447 148459447 C T AGTR1 Silent p.L209L 0.22 TCGA-GF-A6C9-06 3 148562531 148562531 G A CPB1 Missense_Mutation p.R252K 0.10 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 3 148857891 148857891 C T HPS3 Silent p.I106I 0.19 TCGA-GF-A6C9-06 3 150911368 150911368 G A MED12L Missense_Mutation p.R687K 0.16 tolerated(1) benign(0.054) TCGA-GF-A6C9-06 3 150916712 150916712 G A GPR171 Silent p.I154I 0.19 TCGA-GF-A6C9-06 3 150916903 150916903 C T GPR171 Missense_Mutation p.A91T 0.17 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 3 151011933 151011933 C T GPR87 3'UTR 0.22 TCGA-GF-A6C9-06 3 151085536 151085536 C T MED12L Missense_Mutation p.P1109S 0.09 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 3 151161509 151161509 G A IGSF10 Silent p.S1742S 0.21 TCGA-GF-A6C9-06 3 151164328 151164328 T G IGSF10 Silent p.P1147P 0.06 TCGA-GF-A6C9-06 3 151598689 151598689 C T SUCNR1 Nonsense_Mutation p.R120* 0.33 TCGA-GF-A6C9-06 3 154055871 154055871 C T GPR149 Missense_Mutation p.D605N 0.10 deleterious(0.04) possibly_damaging(0.791) TCGA-GF-A6C9-06 3 155203356 155203356 C T PLCH1 Silent p.R929R 0.21 TCGA-GF-A6C9-06 3 155212013 155212013 C T PLCH1 Missense_Mutation p.G688E 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 155215138 155215138 G A PLCH1 Missense_Mutation p.S610F 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 155267725 155267725 C T PLCH1 Missense_Mutation p.E393K 0.19 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 3 157081161 157081161 G A VEPH1 Missense_Mutation p.T576I 0.07 tolerated(0.19) benign(0.008) TCGA-GF-A6C9-06 3 15756159 15756159 T A ANKRD28 Missense_Mutation p.K304I 0.15 deleterious(0.04) possibly_damaging(0.547) TCGA-GF-A6C9-06 3 159584071 159584071 G A IQCJ-SCHIP1 Splice_Site p.X369_splice 0.31 TCGA-GF-A6C9-06 3 160219966 160219966 G A KPNA4 Missense_Mutation p.P498S 0.16 deleterious(0) benign(0.176) TCGA-GF-A6C9-06 3 161214825 161214825 C T OTOL1 Missense_Mutation p.S77F 0.15 tolerated(0.05) unknown(0) TCGA-GF-A6C9-06 3 161221468 161221468 C T OTOL1 Missense_Mutation p.S391F 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 16411695 16411695 C A RFTN1 Missense_Mutation p.K306N 0.19 tolerated(0.17) benign(0.206) TCGA-GF-A6C9-06 3 164714347 164714347 C T SI Silent p.R1556R 0.14 TCGA-GF-A6C9-06 3 164737435 164737435 C A SI Silent p.L1126L 0.14 TCGA-GF-A6C9-06 3 164757744 164757744 C T SI Silent p.T725T 0.08 TCGA-GF-A6C9-06 3 164907600 164907600 C T SLITRK3 Missense_Mutation p.R340Q 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-GF-A6C9-06 3 166958682 166958682 G A ZBBX Nonsense_Mutation p.Q807* 0.15 TCGA-GF-A6C9-06 3 167034821 167034821 G A ZBBX Missense_Mutation p.P389L 0.10 tolerated(0.05) possibly_damaging(0.733) TCGA-GF-A6C9-06 3 167040008 167040008 C T ZBBX Missense_Mutation p.E294K 0.19 deleterious(0) probably_damaging(0.951) TCGA-GF-A6C9-06 3 168810858 168810858 C T MECOM Missense_Mutation p.E895K 0.22 deleterious(0) possibly_damaging(0.547) TCGA-GF-A6C9-06 3 168833289 168833289 G A MECOM Missense_Mutation p.P668S 0.12 tolerated(0.21) benign(0.03) TCGA-GF-A6C9-06 3 168833639 168833639 C T MECOM Missense_Mutation p.G551D 0.16 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 169099049 169099049 C T MECOM Missense_Mutation p.E125K 0.13 tolerated(0.14) benign(0.079) TCGA-GF-A6C9-06 3 169540426 169540426 C T LRRIQ4 Silent p.L239L 0.16 TCGA-GF-A6C9-06 3 170201210 170201210 G A SLC7A14 Silent p.F336F 0.12 TCGA-GF-A6C9-06 3 170783981 170783981 C T TNIK Missense_Mutation p.D1332N 0.14 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 3 170858236 170858236 C T TNIK Silent p.E428E 0.12 TCGA-GF-A6C9-06 3 17131375 17131375 G A PLCL2 Missense_Mutation p.E993K 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.756) TCGA-GF-A6C9-06 3 172166042 172166042 G A GHSR Silent p.F54F 0.08 TCGA-GF-A6C9-06 3 172351850 172351850 G A NCEH1 Silent p.L254L 0.12 TCGA-GF-A6C9-06 3 172835116 172835116 G A SPATA16 Missense_Mutation p.R136C 0.10 deleterious(0.01) benign(0.063) TCGA-GF-A6C9-06 3 182585207 182585207 G C ATP11B Missense_Mutation p.V555L 0.22 tolerated(0.3) benign(0.036) TCGA-GF-A6C9-06 3 182585212 182585212 A C ATP11B Missense_Mutation p.K556N 0.24 tolerated(0.63) benign(0.096) TCGA-GF-A6C9-06 3 183778092 183778092 C T HTR3C Silent p.L432L 0.08 TCGA-GF-A6C9-06 3 183883995 183883995 T G DVL3 Missense_Mutation p.M282R 0.19 deleterious(0.01) probably_damaging(0.929) TCGA-GF-A6C9-06 3 184043641 184043641 C T EIF4G1 Missense_Mutation p.R1049C 0.17 deleterious(0.01) probably_damaging(0.917) TCGA-GF-A6C9-06 3 184100211 184100211 C T CHRD Missense_Mutation p.S245F 0.15 tolerated(0.67) probably_damaging(0.999) TCGA-GF-A6C9-06 3 186338392 186338392 C T AHSG Silent p.P259P 0.23 TCGA-GF-A6C9-06 3 187446258 187446258 G A BCL6 Missense_Mutation p.S477F 0.20 deleterious(0.01) benign(0.261) TCGA-GF-A6C9-06 3 189455616 189455616 C T TP63 Silent p.L50L 0.34 TCGA-GF-A6C9-06 3 189507602 189507602 G A TP63 Intron 0.22 TCGA-GF-A6C9-06 3 189585720 189585720 G A TP63 Silent p.L327L 0.21 TCGA-GF-A6C9-06 3 189612073 189612073 G A TP63 Missense_Mutation p.E609K 0.12 deleterious(0.05) benign(0.012) TCGA-GF-A6C9-06 3 190967872 190967872 C T OSTN Missense_Mutation p.R122W 0.33 deleterious(0) probably_damaging(0.984) TCGA-GF-A6C9-06 3 193032840 193032840 C T ATP13A5 Missense_Mutation p.M693I 0.15 deleterious(0) possibly_damaging(0.877) TCGA-GF-A6C9-06 3 193052803 193052803 C T ATP13A5 Silent p.R343R 0.18 TCGA-GF-A6C9-06 3 193160188 193160188 C T ATP13A4 Silent p.G770G 0.15 TCGA-GF-A6C9-06 3 194117579 194117579 G A GP5 Missense_Mutation p.P478L 0.24 tolerated(0.38) benign(0) TCGA-GF-A6C9-06 3 194118742 194118742 G A GP5 Silent p.A90A 0.26 TCGA-GF-A6C9-06 3 194126555 194126555 A G ATP13A3 3'UTR 0.19 TCGA-GF-A6C9-06 3 195501177 195501177 C T MUC4 Splice_Site p.X4315_splice 0.24 TCGA-GF-A6C9-06 3 196051103 196051103 C T TM4SF19 Intron 0.18 TCGA-GF-A6C9-06 3 196802735 196802735 G A DLG1 Intron 0.09 TCGA-GF-A6C9-06 3 197427918 197427918 G A KIAA0226 Missense_Mutation p.P276L 0.14 deleterious(0.04) benign(0.001) TCGA-GF-A6C9-06 3 23932110 23932111 - A UBE2E1 3'UTR 0.19 TCGA-GF-A6C9-06 3 24185081 24185081 C T THRB Missense_Mutation p.E217K 0.16 deleterious(0.03) benign(0.005) TCGA-GF-A6C9-06 3 24185142 24185142 C T THRB Silent p.R196R 0.17 TCGA-GF-A6C9-06 3 27244026 27244026 G A NEK10 Missense_Mutation p.P705S 0.15 deleterious(0.02) probably_damaging(0.973) TCGA-GF-A6C9-06 3 2908511 2908511 G A CNTN4 Missense_Mutation p.G177E 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 2928814 2928814 C T CNTN4 Silent p.I282I 0.15 TCGA-GF-A6C9-06 3 30045362 30045362 G A RBMS3 3'UTR 0.11 TCGA-GF-A6C9-06 3 3084744 3084744 G A CNTN4 Silent p.T865T 0.16 TCGA-GF-A6C9-06 3 32031158 32031158 C T ZNF860 Missense_Mutation p.S196F 0.12 tolerated(0.74) benign(0.36) TCGA-GF-A6C9-06 3 36527669 36527669 C T STAC Silent p.F205F 0.09 TCGA-GF-A6C9-06 3 36778761 36778761 C T DCLK3 Missense_Mutation p.A464T 0.13 deleterious(0) probably_damaging(0.977) TCGA-GF-A6C9-06 3 37163008 37163008 G A LRRFIP2 Missense_Mutation p.S102F 0.11 deleterious(0.02) benign(0.049) TCGA-GF-A6C9-06 3 37544711 37544711 G A ITGA9 Missense_Mutation p.G219R 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 38417672 38417672 G A XYLB Missense_Mutation p.D357N 0.09 tolerated(0.46) benign(0.099) TCGA-GF-A6C9-06 3 38592428 38592428 G A SCN5A Missense_Mutation p.S1812L 0.14 deleterious(0.01) benign(0.005) TCGA-GF-A6C9-06 3 3887225 3887225 C T LRRN1 Silent p.L300L 0.19 TCGA-GF-A6C9-06 3 38991936 38991936 C T SCN11A 5'UTR 0.33 TCGA-GF-A6C9-06 3 391211 391211 C T CHL1 Missense_Mutation p.H340Y 0.08 tolerated(0.24) possibly_damaging(0.502) TCGA-GF-A6C9-06 3 39174638 39174638 C T TTC21A Silent p.I893I 0.28 TCGA-GF-A6C9-06 3 40433627 40433627 C T ENTPD3 Missense_Mutation p.P52S 0.17 tolerated(0.68) benign(0.008) TCGA-GF-A6C9-06 3 42569530 42569530 C T VIPR1 Missense_Mutation p.S184F 0.13 deleterious(0) possibly_damaging(0.858) TCGA-GF-A6C9-06 3 440748 440748 G A CHL1 Missense_Mutation p.G1101E 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 44932133 44932133 G A TGM4 Silent p.L113L 0.10 TCGA-GF-A6C9-06 3 45763501 45763501 C T SACM1L Missense_Mutation p.S230L 0.12 tolerated(0.23) benign(0.013) TCGA-GF-A6C9-06 3 46399477 46399477 G A CCR2 Silent p.T153T 0.20 TCGA-GF-A6C9-06 3 46414998 46414998 G A CCR5 Missense_Mutation p.G202E 0.21 deleterious(0) probably_damaging(0.98) TCGA-GF-A6C9-06 3 46712996 46712996 G A ALS2CL Silent p.F921F 0.21 TCGA-GF-A6C9-06 3 4714907 4714907 C T ITPR1 Silent p.L749L 0.13 TCGA-GF-A6C9-06 3 47467581 47467581 G A SCAP Silent p.V272V 0.17 TCGA-GF-A6C9-06 3 48423242 48423242 G A FBXW12 Nonsense_Mutation p.W346* 0.13 TCGA-GF-A6C9-06 3 48508522 48508522 C T TREX1 Silent p.I211I 0.14 TCGA-GF-A6C9-06 3 48692794 48692794 G A CELSR3 Missense_Mutation p.P1592L 0.15 deleterious(0.03) benign(0.015) TCGA-GF-A6C9-06 3 48698850 48698850 C T CELSR3 Silent p.Q406Q 0.12 TCGA-GF-A6C9-06 3 49151470 49151470 G A USP19 Silent p.L818L 0.27 TCGA-GF-A6C9-06 3 49836761 49836761 C T CDHR4 Silent p.L53L 0.19 TCGA-GF-A6C9-06 3 51352508 51352508 C T DOCK3 Silent p.I1117I 0.20 TCGA-GF-A6C9-06 3 51747049 51747049 G A GRM2 Nonsense_Mutation p.W337* 0.18 TCGA-GF-A6C9-06 3 51929070 51929070 G A IQCF1 Missense_Mutation p.R152C 0.09 tolerated(0.06) benign(0.13) TCGA-GF-A6C9-06 3 52404126 52404126 G A DNAH1 Missense_Mutation p.E2047K 0.16 benign(0.002) TCGA-GF-A6C9-06 3 52428491 52428491 G A DNAH1 Missense_Mutation p.R3546Q 0.18 benign(0.133) TCGA-GF-A6C9-06 3 52485318 52485318 G A TNNC1 Silent p.F153F 0.12 TCGA-GF-A6C9-06 3 52546963 52546963 G A STAB1 Silent p.P1049P 0.12 TCGA-GF-A6C9-06 3 52797594 52797594 A G NEK4 Missense_Mutation p.I238T 0.20 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 3 53845206 53845206 G A CACNA1D Missense_Mutation p.E2107K 0.17 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-GF-A6C9-06 3 56026137 56026137 C T ERC2 Missense_Mutation p.E735K 0.16 deleterious(0) probably_damaging(0.941) TCGA-GF-A6C9-06 3 58155425 58155425 C T FLNB Missense_Mutation p.S2540F 0.17 deleterious(0.04) possibly_damaging(0.797) TCGA-GF-A6C9-06 3 64526861 64526861 C T ADAMTS9 Missense_Mutation p.D1811N 0.11 tolerated(0.1) possibly_damaging(0.691) TCGA-GF-A6C9-06 3 65372892 65372892 G A MAGI1 Intron 0.17 TCGA-GF-A6C9-06 3 65377018 65377018 T A MAGI1 Nonsense_Mutation p.K739* 0.19 TCGA-GF-A6C9-06 3 67054151 67054151 C T KBTBD8 Missense_Mutation p.P254S 0.12 tolerated(0.13) probably_damaging(0.986) TCGA-GF-A6C9-06 3 67570996 67570996 C T SUCLG2 Silent p.R160R 0.12 TCGA-GF-A6C9-06 3 68055847 68055847 C T FAM19A1 Silent p.S26S 0.10 TCGA-GF-A6C9-06 3 6903390 6903390 C T GRM7 Silent p.I105I 0.19 TCGA-GF-A6C9-06 3 69097638 69097638 G A TMF1 Missense_Mutation p.P73L 0.08 deleterious_low_confidence(0.02) benign(0.065) TCGA-GF-A6C9-06 3 69097669 69097669 C T TMF1 Missense_Mutation p.G63R 0.17 tolerated_low_confidence(0.06) benign(0.02) TCGA-GF-A6C9-06 3 70014163 70014163 G A MITF Missense_Mutation p.D443N 0.10 deleterious(0.04) benign(0.111) TCGA-GF-A6C9-06 3 71026984 71026984 G A FOXP1 Missense_Mutation p.S450L 0.11 deleterious(0.04) possibly_damaging(0.614) TCGA-GF-A6C9-06 3 89259197 89259197 G A EPHA3 Missense_Mutation p.G114E 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 9032419 9032419 C T SRGAP3 Missense_Mutation p.R888Q 0.27 tolerated(0.49) probably_damaging(0.978) TCGA-GF-A6C9-06 3 93605266 93605266 G A PROS1 Missense_Mutation p.L413F 0.19 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 3 95374188 95374188 C T MTHFD2P1 RNA 0.12 TCGA-GF-A6C9-06 3 97194206 97194206 G A EPHA6 Missense_Mutation p.M635I 0.21 tolerated(0.52) benign(0.002) TCGA-GF-A6C9-06 3 97851607 97851607 G A OR5H1 Silent p.Q22Q 0.20 TCGA-GF-A6C9-06 3 97851849 97851849 C T OR5H1 Missense_Mutation p.S103L 0.15 tolerated(0.13) benign(0.03) TCGA-GF-A6C9-06 3 97983739 97983739 C T OR5H6 Missense_Mutation p.S204F 0.17 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 3 98109745 98109745 C T OR5K3 Missense_Mutation p.P79L 0.22 deleterious(0) probably_damaging(0.988) TCGA-GF-A6C9-06 3 98217323 98217323 G A OR5K2 Missense_Mutation p.E267K 0.20 tolerated(0.22) benign(0.047) TCGA-GF-A6C9-06 3 9953126 9953126 G A IL17RE Splice_Site p.X358_splice 0.09 TCGA-GF-A6C9-06 4 100208729 100208729 G A ADH1A Missense_Mutation p.R38C 0.14 deleterious(0.04) benign(0.377) TCGA-GF-A6C9-06 4 100231927 100231927 C T ADH1B Silent p.G366G 0.10 TCGA-GF-A6C9-06 4 100434210 100434210 G A C4orf17 5'UTR 0.21 TCGA-GF-A6C9-06 4 101111092 101111092 C T DDIT4L Missense_Mutation p.E17K 0.11 deleterious(0.04) benign(0.037) TCGA-GF-A6C9-06 4 110222993 110222993 C T COL25A1 Silent p.A61A 0.12 TCGA-GF-A6C9-06 4 111409716 111409716 C T ENPEP Missense_Mutation p.H222Y 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-GF-A6C9-06 4 114262971 114262971 G A ANK2 Missense_Mutation p.E1341K 0.18 probably_damaging(0.999) TCGA-GF-A6C9-06 4 114276850 114276850 C T ANK2 Missense_Mutation p.S2359L 0.17 benign(0.007) TCGA-GF-A6C9-06 4 115544614 115544614 G A UGT8 Missense_Mutation p.R193K 0.12 deleterious(0.04) benign(0.143) TCGA-GF-A6C9-06 4 115997880 115997880 G A NDST4 Nonsense_Mutation p.Q105* 0.24 TCGA-GF-A6C9-06 4 118975306 118975306 C T NDST3 Silent p.L81L 0.07 TCGA-GF-A6C9-06 4 119951203 119951203 G A SYNPO2 Missense_Mutation p.E425K 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-GF-A6C9-06 4 120240735 120240735 C T FABP2 Missense_Mutation p.E102K 0.12 tolerated(0.73) benign(0.004) TCGA-GF-A6C9-06 4 121958681 121958681 C T NDNF Missense_Mutation p.D149N 0.21 deleterious(0.01) benign(0.068) TCGA-GF-A6C9-06 4 126336563 126336563 G A FAT4 Missense_Mutation p.D2149N 0.19 probably_damaging(0.999) TCGA-GF-A6C9-06 4 1360012 1360012 C T UVSSA Intron 0.18 TCGA-GF-A6C9-06 4 138442337 138442337 C T PCDH18 Nonsense_Mutation p.W1085* 0.12 TCGA-GF-A6C9-06 4 140187969 140187969 C T MGARP Silent p.T169T 0.18 TCGA-GF-A6C9-06 4 141321703 141321703 C T CLGN Missense_Mutation p.E168K 0.17 tolerated(0.58) benign(0.101) TCGA-GF-A6C9-06 4 141600878 141600878 G A TBC1D9 Silent p.L160L 0.17 TCGA-GF-A6C9-06 4 144918732 144918732 C T GYPB Silent p.T77T 0.26 TCGA-GF-A6C9-06 4 146067419 146067419 G A OTUD4 Silent p.S409S 0.13 TCGA-GF-A6C9-06 4 146601490 146601490 G A C4orf51 Silent p.V45V 0.22 TCGA-GF-A6C9-06 4 151727477 151727477 G A LRBA Missense_Mutation p.L1822F 0.26 tolerated(0.09) probably_damaging(0.997) TCGA-GF-A6C9-06 4 152638131 152638131 G A PET112 Silent p.I179I 0.16 TCGA-GF-A6C9-06 4 155156308 155156308 C T DCHS2 Missense_Mutation p.E2711K 0.21 tolerated(0.14) benign(0.164) TCGA-GF-A6C9-06 4 155278420 155278420 C T DCHS2 Missense_Mutation p.E251K 0.09 tolerated(0.89) benign(0.001) TCGA-GF-A6C9-06 4 155509978 155509978 C T FGA Missense_Mutation p.E111K 0.17 deleterious(0.03) benign(0.393) TCGA-GF-A6C9-06 4 156273856 156273856 G A MAP9 Silent p.F571F 0.17 TCGA-GF-A6C9-06 4 156830137 156830137 G A TDO2 Silent p.T134T 0.34 TCGA-GF-A6C9-06 4 157999217 157999217 C T GLRB Missense_Mutation p.S14F 0.20 tolerated_low_confidence(0.08) benign(0.136) TCGA-GF-A6C9-06 4 158060056 158060056 G A GLRB Missense_Mutation p.E236K 0.21 deleterious(0.02) benign(0.185) TCGA-GF-A6C9-06 4 158253972 158253972 A G GRIA2 Missense_Mutation p.Y295C 0.24 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C9-06 4 15826515 15826515 G A CD38 Nonsense_Mutation p.W125* 0.15 TCGA-GF-A6C9-06 4 159567960 159567960 G A RXFP1 Missense_Mutation p.G455R 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 4 159568146 159568146 C T RXFP1 Missense_Mutation p.P517S 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 4 159568147 159568147 C T RXFP1 Missense_Mutation p.P517L 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 4 164247294 164247294 C T NPY1R Missense_Mutation p.R138Q 0.23 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 4 164271659 164271659 C T NPY5R Silent p.F78F 0.09 TCGA-GF-A6C9-06 4 164394581 164394581 C T TKTL2 Silent p.R102R 0.12 TCGA-GF-A6C9-06 4 16513672 16513672 T C LDB2 Missense_Mutation p.N224S 0.13 tolerated(0.73) benign(0.01) TCGA-GF-A6C9-06 4 166996154 166996154 A G TLL1 Silent p.E771E 0.19 TCGA-GF-A6C9-06 4 169362602 169362602 C T DDX60L Missense_Mutation p.E394K 0.19 tolerated(0.13) benign(0.032) TCGA-GF-A6C9-06 4 170618602 170618602 C T CLCN3 Missense_Mutation p.P427L 0.20 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 4 173734834 173734834 C T GALNTL6 Missense_Mutation p.P295S 0.18 tolerated(0.16) probably_damaging(0.944) TCGA-GF-A6C9-06 4 175649825 175649825 G A GLRA3 Missense_Mutation p.R98C 0.20 deleterious(0) probably_damaging(0.954) TCGA-GF-A6C9-06 4 175896790 175896790 G A ADAM29 Silent p.R38R 0.20 TCGA-GF-A6C9-06 4 175898892 175898892 C T ADAM29 Missense_Mutation p.S739F 0.10 deleterious(0.01) benign(0.001) TCGA-GF-A6C9-06 4 177071078 177071078 G A WDR17 Missense_Mutation p.R697K 0.08 tolerated(0.21) benign(0.011) TCGA-GF-A6C9-06 4 177632734 177632734 G A VEGFC Missense_Mutation p.S208F 0.14 deleterious(0) probably_damaging(0.988) TCGA-GF-A6C9-06 4 183635329 183635329 G A TENM3 Missense_Mutation p.A771T 0.13 tolerated(0.6) possibly_damaging(0.811) TCGA-GF-A6C9-06 4 188924330 188924330 G A ZFP42 Missense_Mutation p.M123I 0.22 tolerated(0.22) benign(0.001) TCGA-GF-A6C9-06 4 189012464 189012464 C T TRIML2 3'UTR 0.24 TCGA-GF-A6C9-06 4 189064890 189064890 G A TRIML1 Intron 0.09 TCGA-GF-A6C9-06 4 20541109 20541109 C T SLIT2 Silent p.F626F 0.19 TCGA-GF-A6C9-06 4 24543556 24543556 A G DHX15 Silent p.R475R 0.15 TCGA-GF-A6C9-06 4 289848 289848 A G ZNF732 Silent p.L34L 0.17 TCGA-GF-A6C9-06 4 367055 367055 C T ZNF141 Missense_Mutation p.H277Y 0.09 deleterious(0.03) benign(0.261) TCGA-GF-A6C9-06 4 38016578 38016578 G A TBC1D1 Missense_Mutation p.R289Q 0.21 deleterious(0.03) benign(0.173) TCGA-GF-A6C9-06 4 40337918 40337918 C T CHRNA9 Missense_Mutation p.R47C 0.16 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 4 40351265 40351265 C T CHRNA9 Silent p.L244L 0.08 TCGA-GF-A6C9-06 4 40356489 40356489 C T CHRNA9 Silent p.F464F 0.09 TCGA-GF-A6C9-06 4 41664932 41664932 G A LIMCH1 Silent p.S689S 0.19 TCGA-GF-A6C9-06 4 42487664 42487664 G A ATP8A1 Missense_Mutation p.R725C 0.09 deleterious(0.01) benign(0.001) TCGA-GF-A6C9-06 4 44713037 44713037 C T GNPDA2 Missense_Mutation p.G176E 0.15 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-GF-A6C9-06 4 46307613 46307613 G A GABRA2 Silent p.I225I 0.15 TCGA-GF-A6C9-06 4 47809029 47809029 G A CORIN Silent p.G33G 0.19 TCGA-GF-A6C9-06 4 48037013 48037013 G A NIPAL1 Missense_Mutation p.E193K 0.21 tolerated(0.19) benign(0.032) TCGA-GF-A6C9-06 4 48173412 48173412 C G TEC Missense_Mutation p.D100H 0.13 tolerated(0.19) possibly_damaging(0.839) TCGA-GF-A6C9-06 4 48379942 48379942 C T SLAIN2 Missense_Mutation p.P190S 0.32 tolerated(0.15) benign(0.01) TCGA-GF-A6C9-06 4 54011727 54011727 G A SCFD2 Missense_Mutation p.S445F 0.11 deleterious(0) possibly_damaging(0.748) TCGA-GF-A6C9-06 4 54373525 54373525 T C LNX1 Missense_Mutation p.D245G 0.11 tolerated(0.21) benign(0.007) TCGA-GF-A6C9-06 4 55976879 55976879 C T KDR Missense_Mutation p.G345R 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-GF-A6C9-06 4 55979474 55979474 G A KDR Missense_Mutation p.H325Y 0.11 tolerated(0.21) benign(0.001) TCGA-GF-A6C9-06 4 6377611 6377611 C T PPP2R2C Missense_Mutation p.E128K 0.22 tolerated(0.26) benign(0.017) TCGA-GF-A6C9-06 4 68688006 68688006 G A TMPRSS11D 3'UTR 0.10 TCGA-GF-A6C9-06 4 68688093 68688093 C T TMPRSS11D Missense_Mutation p.A407T 0.16 tolerated(0.53) benign(0.003) TCGA-GF-A6C9-06 4 68928481 68928481 C G TMPRSS11F Intron 0.14 TCGA-GF-A6C9-06 4 69533779 69533779 T G UGT2B15 Missense_Mutation p.K284N 0.18 deleterious(0.01) possibly_damaging(0.521) TCGA-GF-A6C9-06 4 70898954 70898954 G A HTN3 3'UTR 0.16 TCGA-GF-A6C9-06 4 71275418 71275418 C T PROL1 Missense_Mutation p.P125S 0.17 tolerated_low_confidence(0.53) possibly_damaging(0.803) TCGA-GF-A6C9-06 4 71347172 71347172 C T MUC7 Silent p.A237A 0.08 TCGA-GF-A6C9-06 4 71347241 71347241 C T MUC7 Silent p.V260V 0.19 TCGA-GF-A6C9-06 4 71347399 71347399 C T MUC7 Missense_Mutation p.S313F 0.15 deleterious(0.05) unknown(0) TCGA-GF-A6C9-06 4 74275124 74275124 C T ALB Missense_Mutation p.L179F 0.16 deleterious(0.02) possibly_damaging(0.868) TCGA-GF-A6C9-06 4 74279226 74279226 C T ALB Silent p.S311S 0.16 TCGA-GF-A6C9-06 4 75938063 75938063 C A PARM1 Missense_Mutation p.P158T 0.18 tolerated(0.05) benign(0.025) TCGA-GF-A6C9-06 4 76928579 76928579 G A CXCL9 Silent p.F8F 0.19 TCGA-GF-A6C9-06 4 77057356 77057356 G A NUP54 Missense_Mutation p.P169S 0.23 tolerated(0.11) probably_damaging(0.917) TCGA-GF-A6C9-06 4 79458176 79458176 G A FRAS1 Nonsense_Mutation p.W3707* 0.15 TCGA-GF-A6C9-06 4 80246584 80246584 C T NAA11 Missense_Mutation p.D150N 0.18 tolerated(0.12) benign(0.03) TCGA-GF-A6C9-06 4 81283924 81283924 G A C4orf22 Missense_Mutation p.R43H 0.12 deleterious(0.01) possibly_damaging(0.709) TCGA-GF-A6C9-06 4 82353490 82353490 C T RASGEF1B Missense_Mutation p.E454K 0.21 deleterious(0) benign(0.097) TCGA-GF-A6C9-06 4 844788 844788 G A GAK Missense_Mutation p.P1198L 0.10 deleterious(0) probably_damaging(0.947) TCGA-GF-A6C9-06 4 84519872 84519872 C T AGPAT9 Missense_Mutation p.P401S 0.18 tolerated(0.67) benign(0.002) TCGA-GF-A6C9-06 4 85569924 85569924 G C CDS1 3'UTR 0.36 TCGA-GF-A6C9-06 4 88036196 88036196 C T AFF1 Silent p.V737V 0.10 TCGA-GF-A6C9-06 4 90816646 90816646 G A MMRN1 Missense_Mutation p.G175E 0.11 tolerated(0.06) benign(0.093) TCGA-GF-A6C9-06 4 91549253 91549253 C T CCSER1 Missense_Mutation p.P601L 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-GF-A6C9-06 4 94138092 94138092 C T GRID2 Intron 0.10 TCGA-GF-A6C9-06 4 94145835 94145835 G A GRID2 Missense_Mutation p.R345Q 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-GF-A6C9-06 4 95575786 95575786 C T PDLIM5 Missense_Mutation p.L516F 0.08 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 4 96761353 96761353 G A PDHA2 Missense_Mutation p.A18T 0.18 deleterious(0.04) benign(0.013) TCGA-GF-A6C9-06 4 985223 985223 T C SLC26A1 Missense_Mutation p.Y90C 0.21 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 5 102340891 102340891 A G PAM Silent p.K588K 0.14 TCGA-GF-A6C9-06 5 102340892 102340892 G A PAM Missense_Mutation p.D589N 0.13 tolerated(0.26) probably_damaging(0.983) TCGA-GF-A6C9-06 5 10239212 10239212 G A FAM173B Silent p.S91S 0.24 TCGA-GF-A6C9-06 5 102611671 102611671 C T C5orf30 Silent p.P17P 0.11 TCGA-GF-A6C9-06 5 102895158 102895158 G A NUDT12 Missense_Mutation p.S73L 0.11 tolerated(0.36) benign(0.007) TCGA-GF-A6C9-06 5 10461428 10461428 C T ROPN1L Missense_Mutation p.P184S 0.07 tolerated(0.69) benign(0.001) TCGA-GF-A6C9-06 5 106762982 106762982 G A EFNA5 Silent p.F118F 0.07 TCGA-GF-A6C9-06 5 108714063 108714063 G A PJA2 Silent p.F375F 0.10 TCGA-GF-A6C9-06 5 10973661 10973661 G A CTNND2 Silent p.T1194T 0.20 TCGA-GF-A6C9-06 5 110819752 110819752 C T CAMK4 Missense_Mutation p.S337L 0.09 tolerated(0.07) possibly_damaging(0.844) TCGA-GF-A6C9-06 5 11082807 11082807 C T CTNND2 Splice_Site p.X930_splice 0.10 TCGA-GF-A6C9-06 5 111541186 111541186 C T EPB41L4A Silent p.K398K 0.09 TCGA-GF-A6C9-06 5 112174370 112174370 T C APC Missense_Mutation p.Y1027H 0.13 probably_damaging(0.998) TCGA-GF-A6C9-06 5 118487697 118487697 C T DMXL1 Silent p.S1556S 0.10 TCGA-GF-A6C9-06 5 120021885 120021885 G A PRR16 Silent p.V109V 0.10 TCGA-GF-A6C9-06 5 121488495 121488495 G A ZNF474 Silent p.P270P 0.11 TCGA-GF-A6C9-06 5 1260663 1260663 C T TERT Missense_Mutation p.A966T 0.09 deleterious(0.01) possibly_damaging(0.821) TCGA-GF-A6C9-06 5 126250785 126250785 C T MARCH3 Missense_Mutation p.G77D 0.20 tolerated(0.07) benign(0.4) TCGA-GF-A6C9-06 5 126746118 126746118 C T MEGF10 Missense_Mutation p.L319F 0.11 deleterious(0.02) benign(0.167) TCGA-GF-A6C9-06 5 126774213 126774213 G A MEGF10 Silent p.G729G 0.11 TCGA-GF-A6C9-06 5 128302035 128302035 C T SLC27A6 Missense_Mutation p.R69W 0.09 deleterious(0) possibly_damaging(0.586) TCGA-GF-A6C9-06 5 128359391 128359391 C T SLC27A6 Missense_Mutation p.H415Y 0.11 deleterious(0) benign(0.154) TCGA-GF-A6C9-06 5 128956392 128956392 G A ADAMTS19 Silent p.Q514Q 0.10 TCGA-GF-A6C9-06 5 128956442 128956442 G A ADAMTS19 Missense_Mutation p.R531K 0.09 tolerated(0.24) benign(0.115) TCGA-GF-A6C9-06 5 129040040 129040040 G A ADAMTS19 Missense_Mutation p.D1084N 0.08 tolerated(0.17) possibly_damaging(0.893) TCGA-GF-A6C9-06 5 132939660 132939660 G A FSTL4 Silent p.G5G 0.12 TCGA-GF-A6C9-06 5 134117698 134117698 C T DDX46 Missense_Mutation p.H323Y 0.11 deleterious(0) possibly_damaging(0.805) TCGA-GF-A6C9-06 5 13717501 13717501 A G DNAH5 Missense_Mutation p.Y4210H 0.24 possibly_damaging(0.727) TCGA-GF-A6C9-06 5 137226257 137226257 T G PKD2L2 Missense_Mutation p.I40R 0.16 deleterious(0) possibly_damaging(0.655) TCGA-GF-A6C9-06 5 13766195 13766195 G A DNAH5 Nonsense_Mutation p.Q3331* 0.06 TCGA-GF-A6C9-06 5 137680718 137680718 C T FAM53C Missense_Mutation p.S114F 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-GF-A6C9-06 5 137708471 137708471 C T KDM3B Missense_Mutation p.R101C 0.12 tolerated(0.05) possibly_damaging(0.869) TCGA-GF-A6C9-06 5 13770933 13770933 G A DNAH5 Missense_Mutation p.S3177L 0.18 possibly_damaging(0.637) TCGA-GF-A6C9-06 5 13830773 13830773 C T DNAH5 Silent p.G1998G 0.27 TCGA-GF-A6C9-06 5 13864514 13864514 C T DNAH5 Missense_Mutation p.E1530K 0.24 benign(0.005) TCGA-GF-A6C9-06 5 13920635 13920635 C T DNAH5 Missense_Mutation p.G251E 0.15 benign(0) TCGA-GF-A6C9-06 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.15 possibly_damaging(0.555) TCGA-GF-A6C9-06 5 140166324 140166324 C T PCDHA1 Missense_Mutation p.S150L 0.11 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-GF-A6C9-06 5 140167544 140167544 G A PCDHA1 Missense_Mutation p.D557N 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-GF-A6C9-06 5 140175897 140175897 G A PCDHA2 Missense_Mutation p.D450N 0.14 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-GF-A6C9-06 5 140181816 140181816 A C PCDHA3 Missense_Mutation p.D345A 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GF-A6C9-06 5 140189010 140189010 G A PCDHA4 Silent p.G746G 0.09 TCGA-GF-A6C9-06 5 140189034 140189034 G A PCDHA4 Silent p.R754R 0.07 TCGA-GF-A6C9-06 5 140202409 140202409 C T PCDHA5 Missense_Mutation p.A350V 0.16 tolerated_low_confidence(0.64) benign(0.002) TCGA-GF-A6C9-06 5 140237229 140237229 C T PCDHA10 Silent p.F532F 0.16 TCGA-GF-A6C9-06 5 140250854 140250854 G A PCDHA11 Nonsense_Mutation p.W722* 0.16 TCGA-GF-A6C9-06 5 140347783 140347783 A T PCDHAC2 Missense_Mutation p.I478L 0.12 tolerated(0.36) benign(0.013) TCGA-GF-A6C9-06 5 140480513 140480513 G A PCDHB3 Missense_Mutation p.E94K 0.14 tolerated_low_confidence(0.14) benign(0.006) TCGA-GF-A6C9-06 5 140481154 140481154 G A PCDHB3 Silent p.L307L 0.13 TCGA-GF-A6C9-06 5 140531242 140531242 C T PCDHB6 Silent p.I468I 0.08 TCGA-GF-A6C9-06 5 140531640 140531640 C T PCDHB6 Missense_Mutation p.S601L 0.07 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 5 140553446 140553446 C T PCDHB7 Nonsense_Mutation p.R344* 0.13 TCGA-GF-A6C9-06 5 140558451 140558451 C T PCDHB8 Missense_Mutation p.S279F 0.10 tolerated_low_confidence(0.07) benign(0.027) TCGA-GF-A6C9-06 5 140563715 140563715 C T PCDHB16 Silent p.F527F 0.11 TCGA-GF-A6C9-06 5 140589586 140589586 G A PCDHB12 Silent p.R369R 0.17 TCGA-GF-A6C9-06 5 140603106 140603106 G A PCDHB14 Missense_Mutation p.R10Q 0.21 tolerated_low_confidence(0.7) benign(0) TCGA-GF-A6C9-06 5 140626125 140626125 C T PCDHB15 Missense_Mutation p.L327F 0.08 tolerated_low_confidence(0.07) benign(0.401) TCGA-GF-A6C9-06 5 140683187 140683187 G A SLC25A2 Silent p.F82F 0.12 TCGA-GF-A6C9-06 5 140720598 140720598 C T PCDHGA2 Missense_Mutation p.S687L 0.09 deleterious_low_confidence(0.01) benign(0.117) TCGA-GF-A6C9-06 5 140720751 140720751 C T PCDHGA2 Missense_Mutation p.S738L 0.08 deleterious_low_confidence(0) benign(0.082) TCGA-GF-A6C9-06 5 140745253 140745253 C T PCDHGA5 Silent p.F452F 0.09 TCGA-GF-A6C9-06 5 140752182 140752182 C T PCDHGB3 Missense_Mutation p.P741S 0.13 tolerated(0.05) benign(0.012) TCGA-GF-A6C9-06 5 140753889 140753889 G A PCDHGA6 Missense_Mutation p.R80Q 0.13 deleterious_low_confidence(0.05) benign(0.177) TCGA-GF-A6C9-06 5 140754490 140754490 C T PCDHGA6 Silent p.S280S 0.18 TCGA-GF-A6C9-06 5 140784560 140784560 C G PCDHGA9 Missense_Mutation p.P681A 0.08 deleterious_low_confidence(0.02) benign(0.025) TCGA-GF-A6C9-06 5 140869565 140869565 A T PCDHGC5 Missense_Mutation p.E253V 0.07 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 5 141244652 141244652 G A PCDH1 Missense_Mutation p.A415V 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 5 142281548 142281548 G A ARHGAP26 Missense_Mutation p.E216K 0.08 deleterious(0) possibly_damaging(0.635) TCGA-GF-A6C9-06 5 143853269 143853269 G A KCTD16 Silent p.K293K 0.17 TCGA-GF-A6C9-06 5 145393464 145393464 C T SH3RF2 Missense_Mutation p.S300F 0.20 deleterious(0) probably_damaging(0.933) TCGA-GF-A6C9-06 5 147024544 147024544 C T JAKMIP2 Missense_Mutation p.E318K 0.15 deleterious(0) probably_damaging(0.969) TCGA-GF-A6C9-06 5 147695273 147695273 G A SPINK7 3'UTR 0.13 TCGA-GF-A6C9-06 5 147695319 147695319 G A SPINK7 3'UTR 0.21 TCGA-GF-A6C9-06 5 147695320 147695320 T A SPINK7 3'UTR 0.17 TCGA-GF-A6C9-06 5 150905410 150905410 G A FAT2 Silent p.F3475F 0.10 TCGA-GF-A6C9-06 5 151784540 151784540 G A NMUR2 Silent p.F45F 0.08 TCGA-GF-A6C9-06 5 153190596 153190596 G A GRIA1 Silent p.L854L 0.17 TCGA-GF-A6C9-06 5 153190674 153190674 C T GRIA1 Silent p.G880G 0.22 TCGA-GF-A6C9-06 5 154393845 154393845 G A KIF4B Silent p.E142E 0.20 TCGA-GF-A6C9-06 5 156381435 156381435 G A TIMD4 Silent p.L131L 0.11 TCGA-GF-A6C9-06 5 156665120 156665120 G A ITK Missense_Mutation p.G257D 0.09 tolerated(0.41) benign(0.044) TCGA-GF-A6C9-06 5 156788589 156788589 C T CYFIP2 Missense_Mutation p.L982F 0.13 tolerated(0.06) probably_damaging(0.91) TCGA-GF-A6C9-06 5 156816291 156816291 G A CYFIP2 Missense_Mutation p.S1075N 0.15 tolerated(0.29) benign(0.141) TCGA-GF-A6C9-06 5 156907966 156907966 C T ADAM19 Silent p.S916S 0.16 TCGA-GF-A6C9-06 5 156923993 156923993 C T ADAM19 Missense_Mutation p.M501I 0.19 tolerated(0.26) benign(0.02) TCGA-GF-A6C9-06 5 156940505 156940505 C T ADAM19 Silent p.K225K 0.18 TCGA-GF-A6C9-06 5 159686748 159686748 G A CCNJL Missense_Mutation p.P152L 0.10 tolerated(0.06) probably_damaging(0.95) TCGA-GF-A6C9-06 5 160763644 160763644 G A GABRB2 Missense_Mutation p.S225F 0.23 deleterious(0.05) benign(0.398) TCGA-GF-A6C9-06 5 161322755 161322755 G A GABRA1 Missense_Mutation p.D314N 0.20 deleterious(0) probably_damaging(0.994) TCGA-GF-A6C9-06 5 162902493 162902493 C T HMMR Silent p.L361L 0.09 TCGA-GF-A6C9-06 5 168098223 168098223 C T SLIT3 Silent p.R1369R 0.18 TCGA-GF-A6C9-06 5 168114082 168114082 C T SLIT3 Silent p.E1072E 0.08 TCGA-GF-A6C9-06 5 168271636 168271636 G T SLIT3 Missense_Mutation p.S170R 0.21 deleterious(0) possibly_damaging(0.846) TCGA-GF-A6C9-06 5 169081456 169081456 C T DOCK2 Silent p.I31I 0.12 TCGA-GF-A6C9-06 5 169454911 169454911 G A DOCK2 Silent p.G1142G 0.08 TCGA-GF-A6C9-06 5 169535378 169535378 C T FOXI1 Silent p.V300V 0.12 TCGA-GF-A6C9-06 5 170876212 170876212 G A FGF18 Silent p.T104T 0.17 TCGA-GF-A6C9-06 5 171509377 171509377 G A STK10 Missense_Mutation p.R648W 0.14 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 5 172196657 172196657 G A DUSP1 Silent p.Y218Y 0.13 TCGA-GF-A6C9-06 5 174936162 174936162 C T SFXN1 Missense_Mutation p.P98S 0.14 deleterious(0.01) possibly_damaging(0.623) TCGA-GF-A6C9-06 5 174938461 174938461 G A SFXN1 Missense_Mutation p.G148R 0.08 tolerated(0.13) possibly_damaging(0.835) TCGA-GF-A6C9-06 5 176314545 176314545 G A HK3 Nonsense_Mutation p.Q503* 0.22 TCGA-GF-A6C9-06 5 176314546 176314546 T C HK3 Silent p.A502A 0.24 TCGA-GF-A6C9-06 5 176636777 176636777 C T NSD1 Silent p.D459D 0.23 TCGA-GF-A6C9-06 5 177309490 177309490 C T RP11-423H2.1 RNA 0.10 TCGA-GF-A6C9-06 5 180048115 180048115 C T FLT4 Missense_Mutation p.E720K 0.09 tolerated(0.07) benign(0.026) TCGA-GF-A6C9-06 5 180057015 180057015 G A FLT4 Silent p.L202L 0.26 TCGA-GF-A6C9-06 5 180661489 180661489 G A TRIM41 Missense_Mutation p.R536Q 0.16 tolerated(0.31) benign(0.021) TCGA-GF-A6C9-06 5 19483628 19483628 C T CDH18 Missense_Mutation p.R555K 0.11 tolerated(0.06) benign(0.004) TCGA-GF-A6C9-06 5 22078665 22078665 G A CDH12 Missense_Mutation p.H41Y 0.22 deleterious(0.04) benign(0.017) TCGA-GF-A6C9-06 5 24505352 24505352 G A CDH10 Missense_Mutation p.S421F 0.08 tolerated(0.21) benign(0.121) TCGA-GF-A6C9-06 5 31267642 31267642 C T CDH6 Missense_Mutation p.S21L 0.10 tolerated(0.74) benign(0.001) TCGA-GF-A6C9-06 5 31323437 31323437 C T CDH6 3'UTR 0.08 TCGA-GF-A6C9-06 5 33577042 33577042 C T ADAMTS12 Missense_Mutation p.R1030K 0.07 tolerated(0.65) benign(0.004) TCGA-GF-A6C9-06 5 35861076 35861076 C T IL7R Silent p.L69L 0.10 TCGA-GF-A6C9-06 5 35876469 35876469 C T IL7R Missense_Mutation p.L421F 0.20 tolerated(0.74) benign(0.011) TCGA-GF-A6C9-06 5 35957327 35957327 C T UGT3A1 Silent p.V346V 0.09 TCGA-GF-A6C9-06 5 36686355 36686355 G A SLC1A3 Missense_Mutation p.S538N 0.25 tolerated(0.12) benign(0.008) TCGA-GF-A6C9-06 5 37051982 37051982 C T NIPBL Silent p.F2352F 0.16 TCGA-GF-A6C9-06 5 37184923 37184923 A G C5orf42 Missense_Mutation p.V1483A 0.21 tolerated(1) benign(0.002) TCGA-GF-A6C9-06 5 38403905 38403905 G A EGFLAM Intron 0.24 TCGA-GF-A6C9-06 5 38418267 38418267 C T EGFLAM Nonsense_Mutation p.Q532* 0.22 TCGA-GF-A6C9-06 5 38427198 38427198 C T EGFLAM Missense_Mutation p.S633F 0.06 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 5 38484883 38484883 C T LIFR Missense_Mutation p.R862Q 0.24 tolerated(0.08) probably_damaging(0.991) TCGA-GF-A6C9-06 5 38883966 38883966 C T OSMR Silent p.F152F 0.21 TCGA-GF-A6C9-06 5 38884065 38884065 G A OSMR Silent p.Q185Q 0.26 TCGA-GF-A6C9-06 5 38904465 38904465 C T OSMR Missense_Mutation p.S382F 0.14 deleterious(0.04) benign(0.172) TCGA-GF-A6C9-06 5 38950766 38950766 G A RICTOR Missense_Mutation p.L1062F 0.08 deleterious(0.03) benign(0.06) TCGA-GF-A6C9-06 5 39202675 39202675 G A FYB Missense_Mutation p.P140S 0.22 deleterious(0.02) benign(0.04) TCGA-GF-A6C9-06 5 39341729 39341729 C T C9 Missense_Mutation p.R86Q 0.24 tolerated(1) benign(0.016) TCGA-GF-A6C9-06 5 40852968 40852968 C T CARD6 Missense_Mutation p.P512S 0.15 deleterious(0.05) possibly_damaging(0.601) TCGA-GF-A6C9-06 5 40979842 40979842 A G C7 Silent p.V727V 0.10 TCGA-GF-A6C9-06 5 41012731 41012731 C T MROH2B Nonsense_Mutation p.W1030* 0.21 TCGA-GF-A6C9-06 5 41186300 41186300 G A C6 Silent p.L200L 0.24 TCGA-GF-A6C9-06 5 41382280 41382280 G A PLCXD3 Missense_Mutation p.H154Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 5 42689028 42689028 C T GHR Missense_Mutation p.S58L 0.16 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 5 5146522 5146522 G A ADAMTS16 Missense_Mutation p.R152Q 0.12 tolerated(0.18) benign(0.248) TCGA-GF-A6C9-06 5 5239925 5239925 G A ADAMTS16 Missense_Mutation p.D804N 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-GF-A6C9-06 5 5465062 5465062 C T KIAA0947 Missense_Mutation p.P1872L 0.30 tolerated(0.83) benign(0.005) TCGA-GF-A6C9-06 5 61779862 61779862 C T IPO11 Silent p.A389A 0.13 TCGA-GF-A6C9-06 5 63890625 63890625 C T RGS7BP Silent p.S184S 0.08 TCGA-GF-A6C9-06 5 64920826 64920826 C A CTC-534A2.2 5'UTR 0.21 TCGA-GF-A6C9-06 5 71493387 71493387 C T MAP1B Missense_Mutation p.P1402L 0.11 probably_damaging(0.999) TCGA-GF-A6C9-06 5 73163756 73163756 C T ARHGEF28 Silent p.S736S 0.13 TCGA-GF-A6C9-06 5 75427947 75427947 A T SV2C Missense_Mutation p.E124D 0.21 tolerated(0.44) benign(0.186) TCGA-GF-A6C9-06 5 75505560 75505560 G A SV2C Splice_Site p.X254_splice 0.10 TCGA-GF-A6C9-06 5 7891483 7891483 A G MTRR Splice_Site p.X470_splice 0.24 TCGA-GF-A6C9-06 5 79027695 79027695 C T CMYA5 Missense_Mutation p.S1036F 0.22 probably_damaging(0.979) TCGA-GF-A6C9-06 5 80681643 80681643 C T ACOT12 Missense_Mutation p.E44K 0.22 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 5 82834079 82834079 C T VCAN Missense_Mutation p.P1753S 0.14 tolerated(0.82) benign(0.01) TCGA-GF-A6C9-06 5 82937378 82937378 G A HAPLN1 Silent p.F334F 0.22 TCGA-GF-A6C9-06 5 83356281 83356281 C T EDIL3 Missense_Mutation p.M325I 0.09 tolerated(0.07) benign(0.132) TCGA-GF-A6C9-06 5 89940612 89940612 C T GPR98 Missense_Mutation p.P942S 0.06 possibly_damaging(0.857) TCGA-GF-A6C9-06 5 90012538 90012538 C T GPR98 Nonsense_Mutation p.R3147* 0.28 TCGA-GF-A6C9-06 5 90079082 90079082 C T GPR98 Missense_Mutation p.T4458I 0.10 probably_damaging(0.992) TCGA-GF-A6C9-06 5 95746553 95746553 G A PCSK1 Silent p.S340S 0.21 TCGA-GF-A6C9-06 5 95746650 95746650 C T PCSK1 Missense_Mutation p.G308E 0.12 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 5 95746651 95746651 C T PCSK1 Missense_Mutation p.G308R 0.19 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 5 96139197 96139197 A T ERAP1 Missense_Mutation p.Y145N 0.16 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 5 9629440 9629440 G A TAS2R1 Silent p.I235I 0.08 TCGA-GF-A6C9-06 6 100838922 100838922 G A SIM1 Missense_Mutation p.P539L 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.773) TCGA-GF-A6C9-06 6 10400698 10400699 - T TFAP2A Frame_Shift_Ins p.N336Kfs*95 0.15 TCGA-GF-A6C9-06 6 105563561 105563561 G A BVES Missense_Mutation p.H320Y 0.20 tolerated(0.41) benign(0) TCGA-GF-A6C9-06 6 105725968 105725968 G A PREP 3'UTR 0.14 TCGA-GF-A6C9-06 6 106552850 106552850 C T PRDM1 Missense_Mutation p.S272L 0.14 tolerated(0.13) possibly_damaging(0.715) TCGA-GF-A6C9-06 6 106553751 106553751 G A PRDM1 Silent p.K572K 0.15 TCGA-GF-A6C9-06 6 106967736 106967736 C T AIM1 Missense_Mutation p.P477S 0.20 tolerated_low_confidence(0.28) benign(0.004) TCGA-GF-A6C9-06 6 107390038 107390038 G A BEND3 Missense_Mutation p.A786V 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-GF-A6C9-06 6 108076820 108076820 C T SCML4 Intron 0.17 TCGA-GF-A6C9-06 6 109190068 109190068 C T ARMC2 Silent p.S111S 0.12 TCGA-GF-A6C9-06 6 109773785 109773785 G A MICAL1 Missense_Mutation p.P202L 0.12 deleterious(0.01) possibly_damaging(0.69) TCGA-GF-A6C9-06 6 110098156 110098156 C T FIG4 Silent p.F594F 0.13 TCGA-GF-A6C9-06 6 110112665 110112665 G A FIG4 Missense_Mutation p.S756N 0.10 deleterious(0.04) possibly_damaging(0.691) TCGA-GF-A6C9-06 6 11191366 11191366 G A NEDD9 Missense_Mutation p.P246S 0.17 tolerated(0.25) benign(0.005) TCGA-GF-A6C9-06 6 112021360 112021360 G A FYN Missense_Mutation p.S270F 0.09 deleterious(0) possibly_damaging(0.665) TCGA-GF-A6C9-06 6 116442585 116442585 C T COL10A1 Missense_Mutation p.G232S 0.12 deleterious(0) unknown(0) TCGA-GF-A6C9-06 6 117073798 117073798 C T FAM162B Missense_Mutation p.E151K 0.21 tolerated(0.07) unknown(0) TCGA-GF-A6C9-06 6 117116893 117116893 G A GPRC6A Missense_Mutation p.H552Y 0.08 tolerated(0.46) benign(0.006) TCGA-GF-A6C9-06 6 117239222 117239222 C T RFX6 Missense_Mutation p.P332L 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 6 117632191 117632191 G A ROS1 Silent p.F2075F 0.09 TCGA-GF-A6C9-06 6 117677906 117677906 C T ROS1 Missense_Mutation p.D1343N 0.13 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 6 117709096 117709096 C T ROS1 Missense_Mutation p.E621K 0.16 tolerated(0.25) benign(0.004) TCGA-GF-A6C9-06 6 119345460 119345460 C T FAM184A Silent p.E226E 0.18 TCGA-GF-A6C9-06 6 119510835 119510835 G A MAN1A1 Nonsense_Mutation p.R514* 0.13 TCGA-GF-A6C9-06 6 12125625 12125625 C T HIVEP1 Missense_Mutation p.S1866L 0.23 tolerated(0.11) benign(0.19) TCGA-GF-A6C9-06 6 12125827 12125827 C T HIVEP1 Silent p.F1933F 0.08 TCGA-GF-A6C9-06 6 121625524 121625524 G A TBC1D32 Missense_Mutation p.R308C 0.19 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 6 123369869 123369869 C T CLVS2 Missense_Mutation p.R223W 0.12 deleterious(0) probably_damaging(0.968) TCGA-GF-A6C9-06 6 128134112 128134112 C T THEMIS Silent p.P558P 0.06 TCGA-GF-A6C9-06 6 128134621 128134621 A T THEMIS Missense_Mutation p.F389I 0.11 deleterious(0.02) probably_damaging(0.928) TCGA-GF-A6C9-06 6 128134690 128134690 G A THEMIS Missense_Mutation p.H366Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 6 128135017 128135017 C T THEMIS Missense_Mutation p.D257N 0.12 tolerated(0.11) possibly_damaging(0.69) TCGA-GF-A6C9-06 6 128135036 128135036 G A THEMIS Silent p.V250V 0.08 TCGA-GF-A6C9-06 6 128135050 128135050 G A THEMIS Missense_Mutation p.P246S 0.10 tolerated(1) benign(0.066) TCGA-GF-A6C9-06 6 128150933 128150933 C T THEMIS Missense_Mutation p.G133S 0.15 deleterious(0.03) probably_damaging(0.983) TCGA-GF-A6C9-06 6 128643239 128643239 C T PTPRK Missense_Mutation p.R147K 0.12 tolerated(0.54) benign(0) TCGA-GF-A6C9-06 6 129905216 129905216 A C ARHGAP18 Missense_Mutation p.H585Q 0.15 tolerated(0.64) benign(0.01) TCGA-GF-A6C9-06 6 130460844 130460844 C T L3MBTL3 Silent p.F763F 0.17 TCGA-GF-A6C9-06 6 130530648 130530648 C T SAMD3 Silent p.L125L 0.24 TCGA-GF-A6C9-06 6 130761987 130761987 C T TMEM200A Silent p.F140F 0.12 TCGA-GF-A6C9-06 6 130762252 130762252 G A TMEM200A Missense_Mutation p.D229N 0.13 tolerated(0.37) benign(0.157) TCGA-GF-A6C9-06 6 131222181 131222181 C T EPB41L2 Missense_Mutation p.D357N 0.09 tolerated(0.68) benign(0.017) TCGA-GF-A6C9-06 6 131902433 131902433 C A ARG1 Missense_Mutation p.T135N 0.18 deleterious(0) possibly_damaging(0.476) TCGA-GF-A6C9-06 6 132021870 132021870 G A OR2A4 Silent p.I224I 0.09 TCGA-GF-A6C9-06 6 132031254 132031254 C T CTAGE9 Missense_Mutation p.E302K 0.08 deleterious(0.01) possibly_damaging(0.714) TCGA-GF-A6C9-06 6 132031896 132031896 C T CTAGE9 Missense_Mutation p.E88K 0.14 deleterious(0.05) benign(0.233) TCGA-GF-A6C9-06 6 132045206 132045206 G A ENPP3 Silent p.Q591Q 0.26 TCGA-GF-A6C9-06 6 132859926 132859926 G T TAAR9 Silent p.S166S 0.12 TCGA-GF-A6C9-06 6 132891670 132891670 C T TAAR6 Silent p.L70L 0.10 TCGA-GF-A6C9-06 6 133078617 133078617 G A VNN2 Silent p.F94F 0.20 TCGA-GF-A6C9-06 6 133844294 133844294 A T EYA4 Missense_Mutation p.I573F 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-GF-A6C9-06 6 136599532 136599532 C T BCLAF1 Missense_Mutation p.E163K 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-GF-A6C9-06 6 136599543 136599543 C T BCLAF1 Missense_Mutation p.R159Q 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-GF-A6C9-06 6 137018414 137018414 G A MAP3K5 Silent p.I306I 0.14 TCGA-GF-A6C9-06 6 137026271 137026271 C T MAP3K5 Missense_Mutation p.E197K 0.14 tolerated(0.06) benign(0.158) TCGA-GF-A6C9-06 6 137245391 137245391 G A SLC35D3 Missense_Mutation p.G270S 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 6 137322957 137322957 G A IL20RA Missense_Mutation p.S467L 0.14 tolerated(0.14) benign(0.01) TCGA-GF-A6C9-06 6 138413251 138413251 G A PERP Silent p.F170F 0.11 TCGA-GF-A6C9-06 6 138584581 138584581 G A KIAA1244 Missense_Mutation p.R654Q 0.08 deleterious(0.01) probably_damaging(0.909) TCGA-GF-A6C9-06 6 138584723 138584723 G A KIAA1244 Silent p.Q701Q 0.09 TCGA-GF-A6C9-06 6 139266721 139266721 G A REPS1 Missense_Mutation p.P131S 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-GF-A6C9-06 6 143092003 143092003 C G HIVEP2 Missense_Mutation p.K1291N 0.09 tolerated(0.07) benign(0.016) TCGA-GF-A6C9-06 6 144081764 144081764 G A PHACTR2 Silent p.T227T 0.09 TCGA-GF-A6C9-06 6 144508147 144508147 C T STX11 Missense_Mutation p.S128L 0.22 tolerated(0.12) benign(0.011) TCGA-GF-A6C9-06 6 146708079 146708079 G A GRM1 Silent p.E552E 0.14 TCGA-GF-A6C9-06 6 147124570 147124570 C T ADGB Intron 0.20 TCGA-GF-A6C9-06 6 147560390 147560390 A G STXBP5 Missense_Mutation p.K139E 0.09 deleterious(0) benign(0.082) TCGA-GF-A6C9-06 6 148761357 148761357 G A SASH1 Missense_Mutation p.R108Q 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.617) TCGA-GF-A6C9-06 6 149700080 149700080 T C TAB2 Silent p.S343S 0.24 TCGA-GF-A6C9-06 6 149700081 149700081 T C TAB2 Missense_Mutation p.S344P 0.25 tolerated(0.52) benign(0.189) TCGA-GF-A6C9-06 6 151859258 151859258 G A CCDC170 Missense_Mutation p.E89K 0.13 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 6 151894384 151894384 G A CCDC170 Missense_Mutation p.G284S 0.27 tolerated(0.59) benign(0.042) TCGA-GF-A6C9-06 6 152466683 152466683 C T SYNE1 Intron 0.18 TCGA-GF-A6C9-06 6 152708303 152708303 G A SYNE1 Silent p.S2797S 0.08 TCGA-GF-A6C9-06 6 152719765 152719765 G A SYNE1 Missense_Mutation p.H2447Y 0.18 benign(0.007) TCGA-GF-A6C9-06 6 152832157 152832157 G A SYNE1 Silent p.L131L 0.07 TCGA-GF-A6C9-06 6 152832184 152832184 C T SYNE1 Missense_Mutation p.V122I 0.06 benign(0.11) TCGA-GF-A6C9-06 6 152841599 152841599 T A SYNE1 Nonsense_Mutation p.R102* 0.09 TCGA-GF-A6C9-06 6 154520897 154520897 T C IPCEF1 Missense_Mutation p.N272S 0.18 tolerated(0.21) benign(0.03) TCGA-GF-A6C9-06 6 15501380 15501380 C T JARID2 Silent p.L730L 0.18 TCGA-GF-A6C9-06 6 157505554 157505554 C T ARID1B Nonsense_Mutation p.Q1179* 0.19 TCGA-GF-A6C9-06 6 158571503 158571503 C G SERAC1 Missense_Mutation p.D83H 0.10 tolerated(0.14) benign(0.422) TCGA-GF-A6C9-06 6 160221850 160221850 C T PNLDC1 Silent p.P30P 0.10 TCGA-GF-A6C9-06 6 160998245 160998245 G A LPA Silent p.V1518V 0.21 TCGA-GF-A6C9-06 6 161027575 161027575 C T LPA Missense_Mutation p.E907K 0.12 tolerated(0.65) probably_damaging(0.974) TCGA-GF-A6C9-06 6 161027678 161027678 C T LPA Missense_Mutation p.M872I 0.11 tolerated(0.14) possibly_damaging(0.54) TCGA-GF-A6C9-06 6 161123349 161123349 G A PLG Missense_Mutation p.E5K 0.11 tolerated(1) benign(0.005) TCGA-GF-A6C9-06 6 161143531 161143531 G A PLG Silent p.K396K 0.17 TCGA-GF-A6C9-06 6 161522950 161522950 G A MAP3K4 Missense_Mutation p.R1234Q 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-GF-A6C9-06 6 161781186 161781186 A G PARK2 Missense_Mutation p.S407P 0.10 deleterious(0) possibly_damaging(0.873) TCGA-GF-A6C9-06 6 162864441 162864441 G A PARK2 Silent p.F24F 0.15 TCGA-GF-A6C9-06 6 16295247 16295247 G A GMPR Missense_Mutation p.G290S 0.32 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 6 16327067 16327067 A T ATXN1 Missense_Mutation p.I492N 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 6 163483254 163483254 C T PACRG Missense_Mutation p.P122S 0.14 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 6 167550570 167550570 G A CCR6 Missense_Mutation p.M284I 0.15 tolerated(0.66) benign(0.004) TCGA-GF-A6C9-06 6 167595347 167595347 G A TCP10L2 Silent p.P335P 0.16 TCGA-GF-A6C9-06 6 168352229 168352229 C T MLLT4 Missense_Mutation p.P1392S 0.09 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 6 168927049 168927049 A G SMOC2 Missense_Mutation p.R94G 0.12 deleterious(0) probably_damaging(0.944) TCGA-GF-A6C9-06 6 169648541 169648541 T C THBS2 Missense_Mutation p.K194E 0.14 deleterious(0) possibly_damaging(0.507) TCGA-GF-A6C9-06 6 169648950 169648950 G A THBS2 Silent p.F57F 0.19 TCGA-GF-A6C9-06 6 17507431 17507431 C T CAP2 Missense_Mutation p.S111L 0.10 deleterious(0) probably_damaging(0.941) TCGA-GF-A6C9-06 6 24146197 24146197 C T NRSN1 3'UTR 0.14 TCGA-GF-A6C9-06 6 24302258 24302258 G A DCDC2 Silent p.I121I 0.18 TCGA-GF-A6C9-06 6 25779487 25779487 C T SLC17A4 3'UTR 0.14 TCGA-GF-A6C9-06 6 26031971 26031971 C T HIST1H3B Silent p.E106E 0.22 TCGA-GF-A6C9-06 6 26056617 26056617 G A HIST1H1C Missense_Mutation p.P14S 0.12 tolerated(0.12) possibly_damaging(0.641) TCGA-GF-A6C9-06 6 26271330 26271330 C T HIST1H3G Missense_Mutation p.E95K 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GF-A6C9-06 6 26509198 26509198 C T BTN1A1 Silent p.F459F 0.10 TCGA-GF-A6C9-06 6 27805674 27805674 G A HIST1H2AK 3'UTR 0.15 TCGA-GF-A6C9-06 6 27858564 27858564 G A HIST1H3J Missense_Mutation p.R3W 0.09 deleterious_low_confidence(0) benign(0.198) TCGA-GF-A6C9-06 6 27858565 27858565 G A HIST1H3J Silent p.A2A 0.11 TCGA-GF-A6C9-06 6 28472031 28472031 G A GPX6 3'UTR 0.22 TCGA-GF-A6C9-06 6 28501787 28501787 C T GPX5 Missense_Mutation p.S170F 0.07 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 6 28542564 28542564 G A SCAND3 Missense_Mutation p.R640W 0.13 deleterious_low_confidence(0) benign(0.17) TCGA-GF-A6C9-06 6 28542993 28542993 C T SCAND3 Missense_Mutation p.E497K 0.16 tolerated_low_confidence(0.12) benign(0.07) TCGA-GF-A6C9-06 6 28971774 28971774 G A ZNF311 5'UTR 0.08 TCGA-GF-A6C9-06 6 29012010 29012010 T A OR2W1 Nonsense_Mutation p.K315* 0.21 TCGA-GF-A6C9-06 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.06 TCGA-GF-A6C9-06 6 29012881 29012881 C T OR2W1 Silent p.E24E 0.09 TCGA-GF-A6C9-06 6 29054975 29054975 G A OR2B3 Silent p.F17F 0.12 TCGA-GF-A6C9-06 6 29080476 29080476 C T OR2J3 Missense_Mutation p.S270F 0.21 deleterious(0.02) benign(0.159) TCGA-GF-A6C9-06 6 29364501 29364501 G A OR12D2 Missense_Mutation p.E9K 0.15 deleterious(0.03) benign(0.053) TCGA-GF-A6C9-06 6 29364552 29364552 T A OR12D2 Missense_Mutation p.F26I 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-GF-A6C9-06 6 29408535 29408535 C T OR10C1 Missense_Mutation p.S248F 0.12 tolerated(0.09) possibly_damaging(0.739) TCGA-GF-A6C9-06 6 2953287 2953287 T C SERPINB6 Silent p.K188K 0.13 TCGA-GF-A6C9-06 6 29639000 29639000 G A MOG Intron 0.19 TCGA-GF-A6C9-06 6 29795930 29795930 C T HLA-G Silent p.F60F 0.18 TCGA-GF-A6C9-06 6 29797363 29797363 G A HLA-G Missense_Mutation p.G263E 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GF-A6C9-06 6 30680634 30680634 C A MDC1 Missense_Mutation p.G362V 0.14 deleterious(0.02) benign(0.039) TCGA-GF-A6C9-06 6 3085639 3085639 C T RIPK1 Missense_Mutation p.P279S 0.14 tolerated(0.31) benign(0.012) TCGA-GF-A6C9-06 6 30877808 30877808 C T GTF2H4 Silent p.F114F 0.07 TCGA-GF-A6C9-06 6 30890699 30890699 C T VARS2 Missense_Mutation p.P741S 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-GF-A6C9-06 6 31079577 31079577 C T C6orf15 Missense_Mutation p.G187R 0.12 tolerated(0.19) benign(0) TCGA-GF-A6C9-06 6 31378929 31378929 G A MICA Missense_Mutation p.D136N 0.20 tolerated(0.23) benign(0.071) TCGA-GF-A6C9-06 6 31625493 31625493 G A APOM Silent p.R178R 0.27 TCGA-GF-A6C9-06 6 31683139 31683139 C T LY6G6D Missense_Mutation p.P3S 0.12 tolerated_low_confidence(0.3) possibly_damaging(0.803) TCGA-GF-A6C9-06 6 31691205 31691205 C T C6orf25 Silent p.A15A 0.19 TCGA-GF-A6C9-06 6 31856801 31856801 G A EHMT2 Silent p.V387V 0.22 TCGA-GF-A6C9-06 6 31927091 31927091 C T SKIV2L Missense_Mutation p.P14S 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GF-A6C9-06 6 31928106 31928106 T C SKIV2L Missense_Mutation p.Y116H 0.24 deleterious(0) benign(0.309) TCGA-GF-A6C9-06 6 32011607 32011607 G A TNXB Missense_Mutation p.P246S 0.20 deleterious(0.01) possibly_damaging(0.531) TCGA-GF-A6C9-06 6 32188210 32188210 G A NOTCH4 Silent p.F377F 0.10 TCGA-GF-A6C9-06 6 32362719 32362719 G A BTNL2 Missense_Mutation p.P388S 0.06 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 6 32411213 32411213 G A HLA-DRA Missense_Mutation p.G194S 0.13 deleterious(0.02) benign(0.334) TCGA-GF-A6C9-06 6 32726690 32726690 C T HLA-DQB2 Missense_Mutation p.G195R 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-GF-A6C9-06 6 32948550 32948550 C T BRD2 3'UTR 0.20 TCGA-GF-A6C9-06 6 33133518 33133518 G A COL11A2 Missense_Mutation p.R1434C 0.18 unknown(0) TCGA-GF-A6C9-06 6 33144515 33144515 C T COL11A2 Missense_Mutation p.G614R 0.26 probably_damaging(0.979) TCGA-GF-A6C9-06 6 33148110 33148110 C T COL11A2 Splice_Site p.X343_splice 0.22 TCGA-GF-A6C9-06 6 33284313 33284313 G A ZBTB22 Silent p.F127F 0.13 TCGA-GF-A6C9-06 6 33744963 33744963 A G LEMD2 Silent p.L404L 0.07 TCGA-GF-A6C9-06 6 34499498 34499498 G A PACSIN1 Missense_Mutation p.G387R 0.06 deleterious(0.01) benign(0.172) TCGA-GF-A6C9-06 6 35046335 35046335 G A ANKS1A Missense_Mutation p.G729R 0.11 deleterious(0) probably_damaging(0.958) TCGA-GF-A6C9-06 6 35088238 35088238 G A TCP11 Missense_Mutation p.L314F 0.14 tolerated(0.38) probably_damaging(0.949) TCGA-GF-A6C9-06 6 35207556 35207556 G A SCUBE3 Missense_Mutation p.G286E 0.18 deleterious(0) probably_damaging(0.959) TCGA-GF-A6C9-06 6 35447092 35447092 G A TEAD3 Missense_Mutation p.A111V 0.24 tolerated(0.65) benign(0.023) TCGA-GF-A6C9-06 6 36263196 36263196 G A PNPLA1 Missense_Mutation p.R257Q 0.12 deleterious(0.03) probably_damaging(0.982) TCGA-GF-A6C9-06 6 36270127 36270127 C T PNPLA1 Missense_Mutation p.S422L 0.12 tolerated_low_confidence(0.11) benign(0.009) TCGA-GF-A6C9-06 6 36287142 36287142 C T C6orf222 Silent p.E638E 0.16 TCGA-GF-A6C9-06 6 36298415 36298415 G A C6orf222 Missense_Mutation p.S18F 0.07 deleterious(0) probably_damaging(0.919) TCGA-GF-A6C9-06 6 36336810 36336810 G A ETV7 Missense_Mutation p.L235F 0.08 deleterious(0.01) possibly_damaging(0.74) TCGA-GF-A6C9-06 6 36995324 36995324 C T FGD2 Silent p.L575L 0.13 TCGA-GF-A6C9-06 6 38746198 38746198 G A DNAH8 Missense_Mutation p.G449E 0.12 benign(0.006) TCGA-GF-A6C9-06 6 38825330 38825330 G A DNAH8 Missense_Mutation p.D1707N 0.09 possibly_damaging(0.899) TCGA-GF-A6C9-06 6 38877323 38877323 G A DNAH8 Silent p.L2964L 0.08 TCGA-GF-A6C9-06 6 38891805 38891805 C T DNAH8 Missense_Mutation p.S3393F 0.14 probably_damaging(0.998) TCGA-GF-A6C9-06 6 38893924 38893924 A T DNAH8 Missense_Mutation p.I3469L 0.10 possibly_damaging(0.777) TCGA-GF-A6C9-06 6 39271845 39271845 G A KCNK17 Silent p.F192F 0.10 TCGA-GF-A6C9-06 6 39284133 39284133 C T KCNK16 Intron 0.12 TCGA-GF-A6C9-06 6 39552694 39552694 C T KIF6 Missense_Mutation p.E353K 0.12 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 6 39880041 39880041 G A MOCS1 Silent p.N316N 0.07 TCGA-GF-A6C9-06 6 40359932 40359932 C T LRFN2 Missense_Mutation p.R707K 0.19 tolerated(0.93) benign(0.003) TCGA-GF-A6C9-06 6 4099316 4099316 G A C6orf201 Silent p.P56P 0.18 TCGA-GF-A6C9-06 6 41621285 41621285 A G MDFI Missense_Mutation p.E238G 0.06 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 6 41738518 41738518 G A FRS3 Nonsense_Mutation p.Q440* 0.10 TCGA-GF-A6C9-06 6 42196221 42196221 G A TRERF1 Silent p.P1155P 0.08 TCGA-GF-A6C9-06 6 42200588 42200588 G A TRERF1 Missense_Mutation p.H1037Y 0.38 deleterious(0.01) benign(0) TCGA-GF-A6C9-06 6 42231025 42231025 G C TRERF1 Intron 0.11 TCGA-GF-A6C9-06 6 42236221 42236221 G A TRERF1 Missense_Mutation p.P370S 0.09 deleterious_low_confidence(0) benign(0.066) TCGA-GF-A6C9-06 6 42236733 42236733 G A TRERF1 Missense_Mutation p.S199F 0.19 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-GF-A6C9-06 6 42936679 42936679 G A PEX6 Missense_Mutation p.P471L 0.07 tolerated(0.15) benign(0.434) TCGA-GF-A6C9-06 6 42936680 42936680 G A PEX6 Missense_Mutation p.P471S 0.07 deleterious(0) probably_damaging(0.946) TCGA-GF-A6C9-06 6 43111199 43111199 C T PTK7 Missense_Mutation p.P706S 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-GF-A6C9-06 6 43111200 43111200 C T PTK7 Missense_Mutation p.P706L 0.20 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 6 43251172 43251172 G T TTBK1 Silent p.P898P 0.32 TCGA-GF-A6C9-06 6 43412875 43412875 C T ABCC10 Silent p.F951F 0.12 TCGA-GF-A6C9-06 6 44120386 44120386 C T TMEM63B Silent p.F631F 0.13 TCGA-GF-A6C9-06 6 44249922 44249922 G A TCTE1 Silent p.A407A 0.08 TCGA-GF-A6C9-06 6 46107323 46107323 G A ENPP4 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-GF-A6C9-06 6 46111149 46111149 G A ENPP4 Silent p.L378L 0.17 TCGA-GF-A6C9-06 6 46135628 46135628 C T ENPP5 Nonsense_Mutation p.W124* 0.14 TCGA-GF-A6C9-06 6 46830729 46830729 G A GPR116 Missense_Mutation p.P699S 0.11 tolerated(0.41) benign(0.045) TCGA-GF-A6C9-06 6 47649312 47649312 C T GPR111 Silent p.V339V 0.12 TCGA-GF-A6C9-06 6 47759624 47759624 G A OPN5 Missense_Mutation p.G113R 0.12 deleterious(0) probably_damaging(0.981) TCGA-GF-A6C9-06 6 47847266 47847266 C T PTCHD4 Silent p.T438T 0.18 TCGA-GF-A6C9-06 6 49753680 49753680 G A PGK2 Silent p.I407I 0.26 TCGA-GF-A6C9-06 6 49753931 49753931 G A PGK2 Missense_Mutation p.H324Y 0.15 tolerated(0.38) benign(0) TCGA-GF-A6C9-06 6 49754826 49754826 G A PGK2 Silent p.F25F 0.11 TCGA-GF-A6C9-06 6 50712953 50712953 G A TFAP2D Silent p.L339L 0.16 TCGA-GF-A6C9-06 6 51944770 51944770 G A PKHD1 Silent p.F106F 0.06 TCGA-GF-A6C9-06 6 52052448 52052448 C T IL17A Silent p.I25I 0.13 TCGA-GF-A6C9-06 6 52870047 52870047 G A ICK Missense_Mutation p.T600I 0.11 tolerated(0.07) benign(0.009) TCGA-GF-A6C9-06 6 52960377 52960377 C T FBXO9 Missense_Mutation p.H384Y 0.14 deleterious(0) probably_damaging(0.953) TCGA-GF-A6C9-06 6 53519768 53519768 G A KLHL31 Silent p.I101I 0.09 TCGA-GF-A6C9-06 6 53989305 53989305 G A MLIP Missense_Mutation p.G85E 0.11 tolerated(0.16) benign(0.004) TCGA-GF-A6C9-06 6 54173442 54173442 G A TINAG Missense_Mutation p.E32K 0.14 tolerated_low_confidence(0.38) benign(0.002) TCGA-GF-A6C9-06 6 54219310 54219310 G A TINAG Splice_Site p.X376_splice 0.21 TCGA-GF-A6C9-06 6 54805148 54805148 A C FAM83B Missense_Mutation p.N460T 0.24 tolerated(0.12) probably_damaging(0.964) TCGA-GF-A6C9-06 6 54805802 54805802 G A FAM83B Missense_Mutation p.G678E 0.09 tolerated(0.1) benign(0.022) TCGA-GF-A6C9-06 6 54806543 54806543 G A FAM83B Missense_Mutation p.R925Q 0.18 deleterious(0.03) possibly_damaging(0.512) TCGA-GF-A6C9-06 6 55039470 55039470 T A HCRTR2 Missense_Mutation p.L29I 0.10 tolerated(0.39) benign(0.017) TCGA-GF-A6C9-06 6 55039574 55039574 C T HCRTR2 Silent p.I63I 0.13 TCGA-GF-A6C9-06 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.15 deleterious(0) probably_damaging(0.934) TCGA-GF-A6C9-06 6 55198740 55198740 C T GFRAL Missense_Mutation p.S105L 0.18 deleterious(0.02) benign(0.058) TCGA-GF-A6C9-06 6 55223686 55223686 G A GFRAL Silent p.R234R 0.22 TCGA-GF-A6C9-06 6 55360232 55360232 G A HMGCLL1 Silent p.I290I 0.13 TCGA-GF-A6C9-06 6 556008 556008 G A EXOC2 Silent p.F646F 0.12 TCGA-GF-A6C9-06 6 55638996 55638996 C T BMP5 Missense_Mutation p.G293E 0.06 deleterious(0.04) probably_damaging(0.945) TCGA-GF-A6C9-06 6 55923972 55923972 C T COL21A1 Missense_Mutation p.G893S 0.17 deleterious(0.01) benign(0.007) TCGA-GF-A6C9-06 6 55925727 55925727 G A COL21A1 Missense_Mutation p.P772S 0.16 tolerated(0.67) benign(0.042) TCGA-GF-A6C9-06 6 56716350 56716350 G A RP11-472M19.2 Intron 0.15 TCGA-GF-A6C9-06 6 56963880 56963880 C A ZNF451 Missense_Mutation p.L43I 0.12 deleterious(0.01) possibly_damaging(0.876) TCGA-GF-A6C9-06 6 57013278 57013278 C T ZNF451 Missense_Mutation p.H799Y 0.10 tolerated(0.19) benign(0.002) TCGA-GF-A6C9-06 6 57512562 57512562 G A PRIM2 3'UTR 0.06 TCGA-GF-A6C9-06 6 6224994 6224994 G A F13A1 Silent p.L300L 0.06 TCGA-GF-A6C9-06 6 62604719 62604719 G A KHDRBS2 Missense_Mutation p.P211S 0.24 tolerated(0.33) benign(0.021) TCGA-GF-A6C9-06 6 6266856 6266856 C T F13A1 Missense_Mutation p.G169D 0.12 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 6 64422810 64422810 C T PHF3 Missense_Mutation p.P1776S 0.10 tolerated(0.13) benign(0.007) TCGA-GF-A6C9-06 6 69772846 69772846 C T BAI3 Missense_Mutation p.S785F 0.16 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 6 70049347 70049347 C T BAI3 Missense_Mutation p.S1137L 0.15 deleterious(0.02) benign(0.016) TCGA-GF-A6C9-06 6 70049357 70049357 C T BAI3 Silent p.G1140G 0.16 TCGA-GF-A6C9-06 6 70071149 70071149 G A BAI3 Missense_Mutation p.M1328I 0.14 tolerated(0.12) benign(0) TCGA-GF-A6C9-06 6 70098769 70098769 C T BAI3 Nonsense_Mutation p.Q1519* 0.17 TCGA-GF-A6C9-06 6 70916954 70916954 C T COL19A1 Silent p.A1135A 0.11 TCGA-GF-A6C9-06 6 70944574 70944574 G A COL9A1 Missense_Mutation p.P728S 0.16 benign(0.114) TCGA-GF-A6C9-06 6 70983763 70983763 G A COL9A1 Missense_Mutation p.S351L 0.12 possibly_damaging(0.856) TCGA-GF-A6C9-06 6 72806823 72806823 C T RIMS1 Silent p.F139F 0.12 TCGA-GF-A6C9-06 6 72968699 72968699 G A RIMS1 Missense_Mutation p.E980K 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-GF-A6C9-06 6 73000469 73000469 C T RIMS1 Silent p.R1214R 0.08 TCGA-GF-A6C9-06 6 73102410 73102410 C T RIMS1 Missense_Mutation p.P1506S 0.10 tolerated(0.24) possibly_damaging(0.518) TCGA-GF-A6C9-06 6 73713655 73713655 G A KCNQ5 Silent p.L141L 0.14 TCGA-GF-A6C9-06 6 7583484 7583484 G A DSP Missense_Mutation p.G1997R 0.11 probably_damaging(1) TCGA-GF-A6C9-06 6 7583576 7583576 A G DSP Silent p.E2027E 0.11 TCGA-GF-A6C9-06 6 7584130 7584130 G A DSP Missense_Mutation p.G2212E 0.08 probably_damaging(1) TCGA-GF-A6C9-06 6 76023412 76023412 C T FILIP1 Silent p.L712L 0.13 TCGA-GF-A6C9-06 6 76024407 76024407 C T FILIP1 Missense_Mutation p.E381K 0.11 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 6 76124553 76124553 C T FILIP1 Missense_Mutation p.E46K 0.13 tolerated(0.09) possibly_damaging(0.733) TCGA-GF-A6C9-06 6 76407209 76407209 T C SENP6 Missense_Mutation p.F755S 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 6 76715024 76715024 C T IMPG1 Missense_Mutation p.G372E 0.10 tolerated(0.21) benign(0.055) TCGA-GF-A6C9-06 6 80631488 80631488 A T ELOVL4 Missense_Mutation p.F132Y 0.12 tolerated(1) benign(0.008) TCGA-GF-A6C9-06 6 84269854 84269854 G A SNAP91 Missense_Mutation p.P867L 0.15 deleterious(0) probably_damaging(0.991) TCGA-GF-A6C9-06 6 84269855 84269855 G A SNAP91 Missense_Mutation p.P867S 0.15 tolerated(0.08) probably_damaging(0.986) TCGA-GF-A6C9-06 6 84567050 84567050 C T RIPPLY2 Missense_Mutation p.S110L 0.11 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 6 84765138 84765138 C T MRAP2 Missense_Mutation p.S34F 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-GF-A6C9-06 6 85447026 85447026 G A TBX18 Missense_Mutation p.H401Y 0.16 tolerated(0.11) possibly_damaging(0.775) TCGA-GF-A6C9-06 6 85466569 85466569 C T TBX18 Silent p.S206S 0.13 TCGA-GF-A6C9-06 6 87725508 87725508 C T HTR1E Silent p.F152F 0.11 TCGA-GF-A6C9-06 6 87726037 87726037 C T HTR1E Silent p.L329L 0.15 TCGA-GF-A6C9-06 6 87726097 87726097 G A HTR1E Missense_Mutation p.E349K 0.10 tolerated(0.25) benign(0.139) TCGA-GF-A6C9-06 6 88265139 88265139 C T RARS2 Missense_Mutation p.V128M 0.12 deleterious(0.01) benign(0.2) TCGA-GF-A6C9-06 6 89895099 89895099 C A GABRR1 Silent p.R242R 0.11 TCGA-GF-A6C9-06 6 90411285 90411285 G A MDN1 Missense_Mutation p.P2807S 0.12 probably_damaging(1) TCGA-GF-A6C9-06 6 90576692 90576692 C T CASP8AP2 RNA 0.20 TCGA-GF-A6C9-06 6 90604460 90604460 C T GJA10 Silent p.V91V 0.18 TCGA-GF-A6C9-06 6 93955046 93955046 G A EPHA7 Missense_Mutation p.S951F 0.12 deleterious(0.02) benign(0.14) TCGA-GF-A6C9-06 6 93956606 93956606 C T EPHA7 Missense_Mutation p.R877H 0.11 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 6 93965670 93965670 C T EPHA7 Missense_Mutation p.G753E 0.19 deleterious(0) possibly_damaging(0.818) TCGA-GF-A6C9-06 6 93982115 93982115 C T EPHA7 Missense_Mutation p.M450I 0.07 tolerated(0.07) benign(0.001) TCGA-GF-A6C9-06 6 96651024 96651024 G A FUT9 Intron 0.07 TCGA-GF-A6C9-06 7 100086313 100086313 C T NYAP1 Silent p.I323I 0.10 TCGA-GF-A6C9-06 7 100192761 100192761 G A FBXO24 Missense_Mutation p.G368E 0.22 tolerated(0.1) probably_damaging(0.931) TCGA-GF-A6C9-06 7 100226993 100226993 G A TFR2 Missense_Mutation p.H425Y 0.22 deleterious(0) possibly_damaging(0.846) TCGA-GF-A6C9-06 7 100229530 100229530 G A TFR2 Silent p.F335F 0.08 TCGA-GF-A6C9-06 7 100345955 100345955 C T ZAN Missense_Mutation p.P371S 0.24 probably_damaging(0.999) TCGA-GF-A6C9-06 7 100348419 100348419 G A ZAN Missense_Mutation p.G474E 0.21 probably_damaging(0.997) TCGA-GF-A6C9-06 7 100552339 100552339 G A MUC3A Missense_Mutation p.E364K 0.21 deleterious(0) probably_damaging(0.909) TCGA-GF-A6C9-06 7 100675173 100675173 C T MUC17 Missense_Mutation p.S159L 0.26 benign(0.002) TCGA-GF-A6C9-06 7 100677071 100677071 G A MUC17 Missense_Mutation p.E792K 0.07 unknown(0) TCGA-GF-A6C9-06 7 100679806 100679806 C T MUC17 Silent p.A1703A 0.29 TCGA-GF-A6C9-06 7 100681201 100681201 C G MUC17 Silent p.V2168V 0.06 TCGA-GF-A6C9-06 7 100683173 100683173 G A MUC17 Missense_Mutation p.E2826K 0.06 unknown(0) TCGA-GF-A6C9-06 7 102604102 102604102 G A FBXL13 Missense_Mutation p.S201F 0.08 deleterious(0.04) benign(0.295) TCGA-GF-A6C9-06 7 103155837 103155837 G A RELN Silent p.F2638F 0.23 TCGA-GF-A6C9-06 7 103179671 103179671 G A RELN Missense_Mutation p.P2345L 0.14 deleterious(0.01) possibly_damaging(0.75) TCGA-GF-A6C9-06 7 103270444 103270444 G A RELN Missense_Mutation p.S882F 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-GF-A6C9-06 7 103276021 103276021 G A RELN Silent p.F772F 0.10 TCGA-GF-A6C9-06 7 103290777 103290777 C T RELN Missense_Mutation p.R649K 0.25 deleterious(0) probably_damaging(0.977) TCGA-GF-A6C9-06 7 103338393 103338393 G A RELN Silent p.I350I 0.11 TCGA-GF-A6C9-06 7 106508123 106508123 C T PIK3CG Silent p.P39P 0.09 TCGA-GF-A6C9-06 7 106508551 106508551 C T PIK3CG Missense_Mutation p.T182I 0.17 deleterious(0.01) possibly_damaging(0.536) TCGA-GF-A6C9-06 7 107355901 107355901 C T SLC26A4 3'UTR 0.09 TCGA-GF-A6C9-06 7 107398974 107398974 C T CBLL1 Missense_Mutation p.S276L 0.15 tolerated(0.65) benign(0.072) TCGA-GF-A6C9-06 7 107399033 107399033 C T CBLL1 Missense_Mutation p.P296S 0.13 deleterious(0.02) probably_damaging(0.983) TCGA-GF-A6C9-06 7 107408071 107408071 C T SLC26A3 Missense_Mutation p.D742N 0.18 tolerated(0.3) benign(0.006) TCGA-GF-A6C9-06 7 107416947 107416947 G A SLC26A3 Missense_Mutation p.P543S 0.31 tolerated(0.22) probably_damaging(0.986) TCGA-GF-A6C9-06 7 107545939 107545939 C T DLD Missense_Mutation p.P191L 0.11 deleterious(0.02) benign(0.125) TCGA-GF-A6C9-06 7 108524078 108524078 C T C7orf66 Missense_Mutation p.E112K 0.24 tolerated_low_confidence(0.24) possibly_damaging(0.801) TCGA-GF-A6C9-06 7 113518303 113518303 C T PPP1R3A Silent p.T948T 0.08 TCGA-GF-A6C9-06 7 113519035 113519035 G A PPP1R3A Silent p.T704T 0.10 TCGA-GF-A6C9-06 7 114298150 114298150 G A FOXP2 Silent p.S457S 0.19 TCGA-GF-A6C9-06 7 114656038 114656038 C T MDFIC 3'UTR 0.32 TCGA-GF-A6C9-06 7 11485851 11485851 C T THSD7A Silent p.G967G 0.15 TCGA-GF-A6C9-06 7 115581000 115581000 G A TFEC Intron 0.32 TCGA-GF-A6C9-06 7 115624496 115624496 G A TFEC 5'UTR 0.08 TCGA-GF-A6C9-06 7 116863085 116863085 C T ST7 3'UTR 0.24 TCGA-GF-A6C9-06 7 117180273 117180273 G A CFTR Missense_Mutation p.G330E 0.17 deleterious(0.02) benign(0.032) TCGA-GF-A6C9-06 7 117182136 117182136 G A CFTR Missense_Mutation p.E395K 0.32 tolerated(0.5) benign(0.001) TCGA-GF-A6C9-06 7 117243763 117243763 G A CFTR Silent p.S945S 0.10 TCGA-GF-A6C9-06 7 120382598 120382598 C T KCND2 Missense_Mutation p.S470F 0.09 deleterious_low_confidence(0.03) benign(0.262) TCGA-GF-A6C9-06 7 120876795 120876795 G A CPED1 Missense_Mutation p.E695K 0.17 tolerated(0.1) benign(0.018) TCGA-GF-A6C9-06 7 120965527 120965527 T A WNT16 5'Flank 0.18 TCGA-GF-A6C9-06 7 122755703 122755703 C T SLC13A1 Missense_Mutation p.A553T 0.29 tolerated(0.28) probably_damaging(0.986) TCGA-GF-A6C9-06 7 123101468 123101468 C T IQUB Silent p.Q650Q 0.09 TCGA-GF-A6C9-06 7 123508731 123508731 C T HYAL4 Missense_Mutation p.A135V 0.16 tolerated(0.36) benign(0.133) TCGA-GF-A6C9-06 7 123514850 123514850 C T HYAL4 Silent p.A330A 0.18 TCGA-GF-A6C9-06 7 123517019 123517019 G A HYAL4 Missense_Mutation p.G419E 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-GF-A6C9-06 7 123594501 123594501 G A SPAM1 Missense_Mutation p.D293N 0.16 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 7 123599579 123599579 G A SPAM1 Silent p.L362L 0.11 TCGA-GF-A6C9-06 7 123600044 123600044 G A SPAM1 Intron 0.31 TCGA-GF-A6C9-06 7 124386996 124386996 G A GPR37 Silent p.A475A 0.08 TCGA-GF-A6C9-06 7 126079151 126079151 C T GRM8 3'UTR 0.20 TCGA-GF-A6C9-06 7 127224953 127224953 G T GCC1 Missense_Mutation p.T95N 0.22 tolerated(0.44) benign(0.086) TCGA-GF-A6C9-06 7 127894610 127894610 G A LEP Missense_Mutation p.D100N 0.12 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 7 128846078 128846078 C T SMO Silent p.T336T 0.08 TCGA-GF-A6C9-06 7 129349038 129349038 C T NRF1 Missense_Mutation p.R244W 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 7 129825186 129825186 G A TMEM209 Missense_Mutation p.P266L 0.07 deleterious(0.01) benign(0.06) TCGA-GF-A6C9-06 7 130008366 130008366 C T CPA5 Silent p.I413I 0.16 TCGA-GF-A6C9-06 7 131012618 131012618 C T MKLN1 5'Flank 0.25 TCGA-GF-A6C9-06 7 134896313 134896313 G A WDR91 5'Flank 0.11 TCGA-GF-A6C9-06 7 135279382 135279382 C T NUP205 Missense_Mutation p.P640S 0.09 tolerated(0.18) probably_damaging(0.959) TCGA-GF-A6C9-06 7 135279383 135279383 C T NUP205 Missense_Mutation p.P640L 0.10 tolerated(0.38) possibly_damaging(0.477) TCGA-GF-A6C9-06 7 135433405 135433405 C T FAM180A 5'UTR 0.09 TCGA-GF-A6C9-06 7 136700836 136700836 C T CHRM2 Silent p.L408L 0.07 TCGA-GF-A6C9-06 7 137304579 137304579 C T DGKI Silent p.K328K 0.23 TCGA-GF-A6C9-06 7 138239657 138239657 T C TRIM24 Silent p.G492G 0.32 TCGA-GF-A6C9-06 7 138417781 138417781 G A ATP6V0A4 Silent p.I583I 0.39 TCGA-GF-A6C9-06 7 138437429 138437429 C T ATP6V0A4 Missense_Mutation p.E324K 0.10 deleterious(0) probably_damaging(0.962) TCGA-GF-A6C9-06 7 138447771 138447771 C T ATP6V0A4 Splice_Site p.X98_splice 0.16 TCGA-GF-A6C9-06 7 138529097 138529097 G A KIAA1549 Missense_Mutation p.S1806L 0.18 deleterious(0.01) possibly_damaging(0.656) TCGA-GF-A6C9-06 7 138602780 138602780 G A KIAA1549 Missense_Mutation p.P531L 0.18 tolerated(0.18) benign(0.016) TCGA-GF-A6C9-06 7 139229058 139229058 C T CLEC2L Silent p.P205P 0.16 TCGA-GF-A6C9-06 7 139299123 139299123 C T HIPK2 Silent p.R633R 0.24 TCGA-GF-A6C9-06 7 139299124 139299124 C T HIPK2 Missense_Mutation p.R633Q 0.24 tolerated(1) benign(0.008) TCGA-GF-A6C9-06 7 139572095 139572095 C T TBXAS1 Missense_Mutation p.P52S 0.09 deleterious(0) probably_damaging(0.973) TCGA-GF-A6C9-06 7 139572104 139572104 G A TBXAS1 Missense_Mutation p.G55R 0.11 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.23 deleterious(0) probably_damaging(0.967) TCGA-GF-A6C9-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.22 deleterious(0) possibly_damaging(0.838) TCGA-GF-A6C9-06 7 141385420 141385420 G A KIAA1147 Missense_Mutation p.P129S 0.11 tolerated(0.76) benign(0.009) TCGA-GF-A6C9-06 7 141408456 141408456 G A WEE2 5'UTR 0.30 TCGA-GF-A6C9-06 7 141418911 141418911 G A WEE2 Missense_Mutation p.E209K 0.16 tolerated(0.37) benign(0.05) TCGA-GF-A6C9-06 7 141490043 141490043 G A TAS2R5 5'UTR 0.31 TCGA-GF-A6C9-06 7 141629991 141629991 G A CLEC5A Silent p.N160N 0.32 TCGA-GF-A6C9-06 7 141631620 141631620 G A CLEC5A Missense_Mutation p.L118F 0.13 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 7 141673352 141673352 C T TAS2R38 Silent p.K46K 0.09 TCGA-GF-A6C9-06 7 141732630 141732630 G A MGAM Missense_Mutation p.M530I 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-GF-A6C9-06 7 141952147 141952147 C T PRSS58 Missense_Mutation p.G207E 0.30 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 7 142000804 142000804 C T TRBV2 5'UTR 0.09 TCGA-GF-A6C9-06 7 142013041 142013041 C T TRBV4-1 Silent p.G2G 0.11 TCGA-GF-A6C9-06 7 142028429 142028429 C T TRBV6-1 Nonsense_Mutation p.R55* 0.28 TCGA-GF-A6C9-06 7 142131560 142131560 G A TRBV5-6 Silent p.I65I 0.09 TCGA-GF-A6C9-06 7 142168509 142168509 C T TRBV5-4 Missense_Mutation p.E72K 0.31 tolerated(0.76) benign(0.002) TCGA-GF-A6C9-06 7 142168892 142168892 C T TRBV5-4 5'UTR 0.21 TCGA-GF-A6C9-06 7 142180763 142180763 C T TRBV6-5 Silent p.L32L 0.07 TCGA-GF-A6C9-06 7 142180916 142180916 G A TRBV6-5 Missense_Mutation p.S12F 0.11 tolerated(0.08) benign(0.001) TCGA-GF-A6C9-06 7 142247180 142247180 G A TRBV7-3 Silent p.S92S 0.17 TCGA-GF-A6C9-06 7 142334690 142334690 C T TRBV20-1 Missense_Mutation p.R38C 0.08 tolerated(0.16) benign(0.045) TCGA-GF-A6C9-06 7 142364228 142364228 C T TRBV24-1 5'UTR 0.22 TCGA-GF-A6C9-06 7 142378913 142378913 G A MTRNR2L6 3'Flank 0.28 TCGA-GF-A6C9-06 7 142428773 142428773 G A TRBV28 Missense_Mutation p.D45N 0.21 tolerated(0.39) benign(0.015) TCGA-GF-A6C9-06 7 142561816 142561816 G A EPHB6 Silent p.Q86Q 0.09 TCGA-GF-A6C9-06 7 142564288 142564288 C T EPHB6 Silent p.I504I 0.09 TCGA-GF-A6C9-06 7 142565411 142565411 C T EPHB6 Missense_Mutation p.S599F 0.19 tolerated(0.06) possibly_damaging(0.866) TCGA-GF-A6C9-06 7 142572332 142572332 G A TRPV6 Missense_Mutation p.S455F 0.31 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 7 142572917 142572917 C T TRPV6 Missense_Mutation p.E375K 0.13 deleterious(0) probably_damaging(0.967) TCGA-GF-A6C9-06 7 142573598 142573598 G A TRPV6 Silent p.T274T 0.36 TCGA-GF-A6C9-06 7 142638285 142638285 G A KEL 3'UTR 0.19 TCGA-GF-A6C9-06 7 142640664 142640664 C T KEL Missense_Mutation p.D538N 0.08 tolerated(0.24) benign(0.013) TCGA-GF-A6C9-06 7 143020464 143020464 C T CLCN1 Silent p.F253F 0.09 TCGA-GF-A6C9-06 7 143048917 143048917 G A CLCN1 Silent p.L942L 0.10 TCGA-GF-A6C9-06 7 143090921 143090921 G A EPHA1 Missense_Mutation p.P847S 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-GF-A6C9-06 7 143140620 143140620 C T TAS2R60 Silent p.L25L 0.09 TCGA-GF-A6C9-06 7 143175351 143175351 G A TAS2R41 Nonsense_Mutation p.W129* 0.11 TCGA-GF-A6C9-06 7 143453526 143453526 C T CTAGE6 Missense_Mutation p.R409Q 0.08 tolerated(0.08) benign(0.22) TCGA-GF-A6C9-06 7 143632968 143632968 C T OR2F2 Silent p.L215L 0.12 TCGA-GF-A6C9-06 7 143657761 143657761 G A OR2F1 Missense_Mutation p.G233E 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-GF-A6C9-06 7 143701919 143701919 C T OR6B1 Missense_Mutation p.A277V 0.11 deleterious(0.02) possibly_damaging(0.583) TCGA-GF-A6C9-06 7 143747998 143747998 C T OR2A5 Silent p.F168F 0.06 TCGA-GF-A6C9-06 7 143807488 143807488 A T OR2A2 Missense_Mutation p.K271N 0.08 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 7 143955870 143955870 G T OR2A7 Silent p.L284L 0.13 TCGA-GF-A6C9-06 7 143956715 143956715 C T OR2A7 Missense_Mutation p.D3N 0.14 tolerated(0.26) benign(0.001) TCGA-GF-A6C9-06 7 14647077 14647077 C T DGKB Missense_Mutation p.G473E 0.25 tolerated(0.1) benign(0.102) TCGA-GF-A6C9-06 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.32 deleterious(0) possibly_damaging(0.466) TCGA-GF-A6C9-06 7 146997344 146997344 C T CNTNAP2 Missense_Mutation p.P487L 0.12 tolerated(0.13) benign(0.147) TCGA-GF-A6C9-06 7 148712107 148712107 G A PDIA4 Missense_Mutation p.S168F 0.10 deleterious(0.03) probably_damaging(0.961) TCGA-GF-A6C9-06 7 148964214 148964214 C T ZNF783 Missense_Mutation p.L192F 0.11 deleterious(0.01) possibly_damaging(0.793) TCGA-GF-A6C9-06 7 149479958 149479958 G A SSPO RNA 0.18 TCGA-GF-A6C9-06 7 149500563 149500563 G A SSPO Intron 0.35 TCGA-GF-A6C9-06 7 149557754 149557754 G C ZNF862 Missense_Mutation p.R502P 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 7 149557778 149557778 C T ZNF862 Missense_Mutation p.P510L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 7 150027438 150027438 C A ZBED6CL 5'UTR 0.09 TCGA-GF-A6C9-06 7 150217107 150217107 G A GIMAP7 Silent p.G15G 0.20 TCGA-GF-A6C9-06 7 150217122 150217122 G A GIMAP7 Silent p.G20G 0.09 TCGA-GF-A6C9-06 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.09 tolerated(0.26) benign(0.085) TCGA-GF-A6C9-06 7 150417602 150417602 G A GIMAP1 Silent p.E170E 0.21 TCGA-GF-A6C9-06 7 150554636 150554636 G A AOC1 Missense_Mutation p.G360R 0.07 tolerated(0.08) possibly_damaging(0.697) TCGA-GF-A6C9-06 7 150934934 150934934 C T CHPF2 Silent p.L496L 0.30 TCGA-GF-A6C9-06 7 151135072 151135072 G A CRYGN Intron 0.11 TCGA-GF-A6C9-06 7 151292436 151292436 A T PRKAG2 Missense_Mutation p.L287I 0.18 deleterious(0.01) probably_damaging(0.962) TCGA-GF-A6C9-06 7 154379702 154379702 G A DPP6 Intron 0.09 TCGA-GF-A6C9-06 7 154684273 154684273 G A DPP6 3'UTR 0.44 TCGA-GF-A6C9-06 7 154684274 154684274 G A DPP6 3'UTR 0.47 TCGA-GF-A6C9-06 7 156468501 156468501 G A RNF32 Missense_Mutation p.E266K 0.22 deleterious(0.01) benign(0.154) TCGA-GF-A6C9-06 7 157367036 157367036 C T PTPRN2 Intron 0.13 TCGA-GF-A6C9-06 7 157387948 157387948 G A PTPRN2 Silent p.T826T 0.15 TCGA-GF-A6C9-06 7 157475444 157475444 T G PTPRN2 Silent p.P658P 0.08 TCGA-GF-A6C9-06 7 157997882 157997882 C T PTPRN2 Missense_Mutation p.E121K 0.37 tolerated(0.07) benign(0.122) TCGA-GF-A6C9-06 7 158716371 158716371 C T WDR60 Missense_Mutation p.S735F 0.27 tolerated(0.39) benign(0.001) TCGA-GF-A6C9-06 7 158896490 158896490 G A VIPR2 Silent p.F105F 0.15 TCGA-GF-A6C9-06 7 18066818 18066818 C T PRPS1L1 Silent p.R196R 0.13 TCGA-GF-A6C9-06 7 18687468 18687468 C T HDAC9 Missense_Mutation p.P366S 0.17 tolerated(0.33) benign(0.003) TCGA-GF-A6C9-06 7 18688182 18688182 C T HDAC9 Missense_Mutation p.P448L 0.23 deleterious(0) probably_damaging(0.987) TCGA-GF-A6C9-06 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.08 tolerated(0.64) benign(0.002) TCGA-GF-A6C9-06 7 21469154 21469154 C T SP4 Missense_Mutation p.S124L 0.14 deleterious(0.02) benign(0.012) TCGA-GF-A6C9-06 7 21640765 21640765 T C DNAH11 Silent p.F1131F 0.15 TCGA-GF-A6C9-06 7 21818633 21818633 C T DNAH11 Missense_Mutation p.H3139Y 0.18 benign(0.212) TCGA-GF-A6C9-06 7 21818690 21818690 G A DNAH11 Missense_Mutation p.E3158K 0.12 benign(0.318) TCGA-GF-A6C9-06 7 21938988 21938988 G A DNAH11 Missense_Mutation p.D4369N 0.17 possibly_damaging(0.771) TCGA-GF-A6C9-06 7 21940630 21940630 C T DNAH11 Missense_Mutation p.R4444C 0.14 benign(0.265) TCGA-GF-A6C9-06 7 22186564 22186564 G A RAPGEF5 Missense_Mutation p.A500V 0.17 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 7 22190073 22190073 C T RAPGEF5 Silent p.E459E 0.12 TCGA-GF-A6C9-06 7 22769135 22769135 G A IL6 Silent p.E109E 0.08 TCGA-GF-A6C9-06 7 23381724 23381724 C T IGF2BP3 Missense_Mutation p.G388R 0.21 tolerated(0.1) benign(0.013) TCGA-GF-A6C9-06 7 23508151 23508151 T C IGF2BP3 Silent p.E62E 0.18 TCGA-GF-A6C9-06 7 23871804 23871804 C T STK31 Missense_Mutation p.S960L 0.17 deleterious(0.03) possibly_damaging(0.672) TCGA-GF-A6C9-06 7 2415035 2415035 C T EIF3B Missense_Mutation p.A634V 0.12 tolerated(0.3) benign(0.247) TCGA-GF-A6C9-06 7 24331428 24331428 C T NPY 3'Flank 0.18 TCGA-GF-A6C9-06 7 2472340 2472340 C T CHST12 Silent p.I22I 0.15 TCGA-GF-A6C9-06 7 2578366 2578366 G A BRAT1 Silent p.S601S 0.11 TCGA-GF-A6C9-06 7 2578381 2578381 G A BRAT1 Silent p.L596L 0.13 TCGA-GF-A6C9-06 7 27147966 27147966 G A HOXA3 Silent p.P300P 0.26 TCGA-GF-A6C9-06 7 2740008 2740008 G A AMZ1 5'UTR 0.22 TCGA-GF-A6C9-06 7 27672031 27672032 - T HIBADH Frame_Shift_Ins p.A96Sfs*2 0.18 TCGA-GF-A6C9-06 7 29552283 29552283 C T CHN2 Silent p.L447L 0.12 TCGA-GF-A6C9-06 7 2959073 2959073 G A CARD11 Silent p.L815L 0.15 TCGA-GF-A6C9-06 7 2976766 2976766 C T CARD11 Missense_Mutation p.E416K 0.21 deleterious(0.04) probably_damaging(0.948) TCGA-GF-A6C9-06 7 30058624 30058624 G A FKBP14 Silent p.L155L 0.16 TCGA-GF-A6C9-06 7 30831043 30831043 C T FAM188B Missense_Mutation p.P309L 0.19 tolerated(1) benign(0) TCGA-GF-A6C9-06 7 31378150 31378150 C T NEUROD6 Missense_Mutation p.E245K 0.12 tolerated(0.2) possibly_damaging(0.874) TCGA-GF-A6C9-06 7 31378313 31378313 C A NEUROD6 Missense_Mutation p.M190I 0.09 tolerated(0.41) benign(0.001) TCGA-GF-A6C9-06 7 31617782 31617782 A G CCDC129 Missense_Mutation p.I328V 0.12 tolerated(0.55) benign(0.006) TCGA-GF-A6C9-06 7 31890254 31890254 C T PDE1C Splice_Site p.X344_splice 0.10 TCGA-GF-A6C9-06 7 33136927 33136927 G A RP9 Missense_Mutation p.P121S 0.12 tolerated(0.06) benign(0.005) TCGA-GF-A6C9-06 7 33945191 33945191 G A BMPER 5'UTR 0.25 TCGA-GF-A6C9-06 7 34091495 34091495 C T BMPER Silent p.L233L 0.15 TCGA-GF-A6C9-06 7 34192778 34192778 G A BMPER Missense_Mutation p.E651K 0.09 tolerated(0.06) benign(0.007) TCGA-GF-A6C9-06 7 36436028 36436028 G - ANLN Frame_Shift_Del 0.12 TCGA-GF-A6C9-06 7 36552919 36552919 C T AOAH Missense_Mutation p.G556E 0.15 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 7 39503970 39503970 C T POU6F2 Silent p.A587A 0.17 TCGA-GF-A6C9-06 7 39504114 39504114 G A POU6F2 Silent p.Q635Q 0.19 TCGA-GF-A6C9-06 7 4247730 4247730 G A SDK1 Splice_Site p.X1739_splice 0.09 TCGA-GF-A6C9-06 7 43447229 43447229 C T HECW1 Nonsense_Mutation p.Q234* 0.19 TCGA-GF-A6C9-06 7 44054274 44054274 G A SPDYE1 3'Flank 0.08 TCGA-GF-A6C9-06 7 44198810 44198810 G A GCK 5'UTR 0.24 TCGA-GF-A6C9-06 7 44561764 44561764 G A NPC1L1 Silent p.T905T 0.15 TCGA-GF-A6C9-06 7 44579081 44579081 G A NPC1L1 Silent p.F305F 0.07 TCGA-GF-A6C9-06 7 45010263 45010263 G A MYO1G Missense_Mutation p.P382L 0.10 tolerated(0.59) probably_damaging(1) TCGA-GF-A6C9-06 7 45010264 45010264 G A MYO1G Missense_Mutation p.P382S 0.09 tolerated(0.78) probably_damaging(1) TCGA-GF-A6C9-06 7 47317690 47317690 G A TNS3 Missense_Mutation p.S1441F 0.16 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 7 47451380 47451380 G A TNS3 Missense_Mutation p.P223L 0.19 deleterious(0.01) benign(0.232) TCGA-GF-A6C9-06 7 47944104 47944104 G A PKD1L1 Missense_Mutation p.S601L 0.17 deleterious(0) probably_damaging(0.981) TCGA-GF-A6C9-06 7 48259088 48259088 G A ABCA13 Missense_Mutation p.R142Q 0.16 benign(0.007) TCGA-GF-A6C9-06 7 48312729 48312729 G A ABCA13 Missense_Mutation p.E1156K 0.11 possibly_damaging(0.678) TCGA-GF-A6C9-06 7 48338074 48338074 C T ABCA13 Missense_Mutation p.S3104F 0.16 probably_damaging(0.999) TCGA-GF-A6C9-06 7 50607697 50607697 G A DDC Silent p.F77F 0.21 TCGA-GF-A6C9-06 7 50611640 50611640 C T DDC Silent p.Q48Q 0.13 TCGA-GF-A6C9-06 7 5096961 5096961 C T RBAK-RBAKDN Silent p.F17F 0.09 TCGA-GF-A6C9-06 7 5104538 5104538 C T RBAK Missense_Mutation p.S484F 0.13 deleterious(0) benign(0.116) TCGA-GF-A6C9-06 7 53103782 53103782 G A POM121L12 Missense_Mutation p.G140R 0.12 tolerated(0.25) benign(0.001) TCGA-GF-A6C9-06 7 53103968 53103968 G A POM121L12 Missense_Mutation p.D202N 0.08 tolerated(0.07) possibly_damaging(0.765) TCGA-GF-A6C9-06 7 53104048 53104048 C T POM121L12 Silent p.S228S 0.08 TCGA-GF-A6C9-06 7 53104344 53104344 C T POM121L12 3'UTR 0.19 TCGA-GF-A6C9-06 7 55238262 55238262 C T EGFR Intron 0.15 TCGA-GF-A6C9-06 7 55242487 55242487 C T EGFR Missense_Mutation p.P753S 0.16 deleterious(0.04) possibly_damaging(0.831) TCGA-GF-A6C9-06 7 5662697 5662697 G A RNF216 Missense_Mutation p.P856S 0.11 deleterious(0.02) benign(0.423) TCGA-GF-A6C9-06 7 63726290 63726290 C T ZNF679 Silent p.F93F 0.25 TCGA-GF-A6C9-06 7 66410237 66410237 T G TMEM248 Missense_Mutation p.I145S 0.13 deleterious(0.01) benign(0.142) TCGA-GF-A6C9-06 7 70880946 70880946 C T WBSCR17 Nonsense_Mutation p.Q221* 0.20 TCGA-GF-A6C9-06 7 70885930 70885930 G A WBSCR17 Silent p.R267R 0.08 TCGA-GF-A6C9-06 7 71252859 71252859 G A CALN1 Silent p.T229T 0.18 TCGA-GF-A6C9-06 7 72411523 72411523 C T POM121 Missense_Mutation p.P347S 0.15 tolerated(0.98) benign(0.002) TCGA-GF-A6C9-06 7 72658818 72658818 G A GTF2IRD2P1 RNA 0.13 TCGA-GF-A6C9-06 7 72717689 72717689 G A NSUN5 Silent p.F398F 0.15 TCGA-GF-A6C9-06 7 73011946 73011946 G A MLXIPL Missense_Mutation p.P390L 0.29 tolerated(0.24) benign(0.007) TCGA-GF-A6C9-06 7 73478005 73478005 C T ELN Missense_Mutation p.P658L 0.08 unknown(0) TCGA-GF-A6C9-06 7 74193755 74193755 C T NCF1 Missense_Mutation p.P128S 0.22 deleterious(0.03) benign(0.052) TCGA-GF-A6C9-06 7 75517458 75517458 C T RHBDD2 Missense_Mutation p.P296S 0.09 tolerated(0.08) probably_damaging(0.919) TCGA-GF-A6C9-06 7 75643075 75643075 G A STYXL1 Silent p.I146I 0.20 TCGA-GF-A6C9-06 7 77797366 77797366 T G MAGI2 Silent p.P821P 0.24 TCGA-GF-A6C9-06 7 8126015 8126015 C T GLCCI1 Silent p.L497L 0.07 TCGA-GF-A6C9-06 7 8126016 8126016 T G GLCCI1 Missense_Mutation p.S498A 0.07 tolerated(0.22) benign(0.432) TCGA-GF-A6C9-06 7 81695819 81695819 C T CACNA2D1 Missense_Mutation p.S227N 0.16 tolerated_low_confidence(0.18) benign(0.281) TCGA-GF-A6C9-06 7 82430892 82430892 C T PCLO Silent p.Q4983Q 0.16 TCGA-GF-A6C9-06 7 82453651 82453651 C T PCLO Missense_Mutation p.D4833N 0.10 unknown(0) TCGA-GF-A6C9-06 7 82475933 82475933 G A PCLO Missense_Mutation p.S4594L 0.33 unknown(0) TCGA-GF-A6C9-06 7 82545860 82545860 C T PCLO Silent p.K3814K 0.10 TCGA-GF-A6C9-06 7 82579994 82579994 G A PCLO Missense_Mutation p.H3304Y 0.10 unknown(0) TCGA-GF-A6C9-06 7 82582810 82582810 G A PCLO Missense_Mutation p.P2487S 0.09 unknown(0) TCGA-GF-A6C9-06 7 82583655 82583655 C T PCLO Missense_Mutation p.S2205N 0.25 unknown(0) TCGA-GF-A6C9-06 7 82584699 82584699 G A PCLO Missense_Mutation p.S1857F 0.14 unknown(0) TCGA-GF-A6C9-06 7 82585020 82585020 C T PCLO Missense_Mutation p.G1750E 0.19 unknown(0) TCGA-GF-A6C9-06 7 82585211 82585211 C T PCLO Silent p.Q1686Q 0.11 TCGA-GF-A6C9-06 7 82595719 82595719 G A PCLO Missense_Mutation p.P1129S 0.11 unknown(0) TCGA-GF-A6C9-06 7 82997210 82997210 C T SEMA3E Missense_Mutation p.E674K 0.09 tolerated(0.68) benign(0.031) TCGA-GF-A6C9-06 7 82997211 82997211 C T SEMA3E Silent p.V673V 0.09 TCGA-GF-A6C9-06 7 86394514 86394514 G A GRM3 Missense_Mutation p.G18E 0.14 tolerated(0.34) benign(0.05) TCGA-GF-A6C9-06 7 86415799 86415799 G A GRM3 Missense_Mutation p.E231K 0.09 tolerated(0.87) benign(0.127) TCGA-GF-A6C9-06 7 86817410 86817410 T C DMTF1 Silent p.L402L 0.11 TCGA-GF-A6C9-06 7 87053293 87053293 C T ABCB4 Missense_Mutation p.G714R 0.10 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 7 87060767 87060767 C T ABCB4 Missense_Mutation p.E616K 0.15 tolerated(0.07) benign(0.067) TCGA-GF-A6C9-06 7 87173569 87173569 G A ABCB1 Missense_Mutation p.S696F 0.11 deleterious(0) possibly_damaging(0.723) TCGA-GF-A6C9-06 7 87912021 87912021 A G STEAP4 Missense_Mutation p.Y307H 0.10 deleterious(0) probably_damaging(0.992) TCGA-GF-A6C9-06 7 87912022 87912022 G A STEAP4 Silent p.L306L 0.09 TCGA-GF-A6C9-06 7 88963820 88963820 G A ZNF804B Silent p.L508L 0.10 TCGA-GF-A6C9-06 7 88965891 88965891 C T ZNF804B Missense_Mutation p.P1199S 0.09 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 7 88965935 88965935 C T ZNF804B Silent p.F1213F 0.11 TCGA-GF-A6C9-06 7 89939544 89939544 C T C7orf63 Missense_Mutation p.P940S 0.30 deleterious_low_confidence(0.01) benign(0.167) TCGA-GF-A6C9-06 7 92143197 92143197 G A PEX1 Missense_Mutation p.P442S 0.08 deleterious(0.01) possibly_damaging(0.616) TCGA-GF-A6C9-06 7 92731165 92731165 G A SAMD9 Nonsense_Mutation p.R1416* 0.05 TCGA-GF-A6C9-06 7 92731372 92731372 G A SAMD9 Missense_Mutation p.L1347F 0.32 deleterious(0) probably_damaging(0.964) TCGA-GF-A6C9-06 7 92732185 92732185 G A SAMD9 Missense_Mutation p.H1076Y 0.10 tolerated(0.05) benign(0.006) TCGA-GF-A6C9-06 7 92763924 92763924 C T SAMD9L Missense_Mutation p.G454E 0.10 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 7 92844733 92844733 G A HEPACAM2 Silent p.I232I 0.33 TCGA-GF-A6C9-06 7 92848461 92848461 C T HEPACAM2 Missense_Mutation p.G128E 0.09 tolerated(0.08) probably_damaging(0.998) TCGA-GF-A6C9-06 7 94053729 94053729 G A COL1A2 Missense_Mutation p.G883S 0.28 unknown(0) TCGA-GF-A6C9-06 7 94057008 94057008 G A COL1A2 Missense_Mutation p.D1113N 0.12 unknown(0) TCGA-GF-A6C9-06 7 94996712 94996712 C T PON3 Silent p.L152L 0.11 TCGA-GF-A6C9-06 7 97800978 97800978 C T LMTK2 Silent p.F261F 0.15 TCGA-GF-A6C9-06 7 98478873 98478873 C G TRRAP Missense_Mutation p.P34A 0.08 possibly_damaging(0.685) TCGA-GF-A6C9-06 7 98606041 98606041 G A TRRAP Missense_Mutation p.E3585K 0.07 possibly_damaging(0.697) TCGA-GF-A6C9-06 7 99270202 99270202 C T CYP3A5 Splice_Site p.X106_splice 0.23 TCGA-GF-A6C9-06 7 99270295 99270295 C T CYP3A5 Missense_Mutation p.E76K 0.06 deleterious(0) benign(0.317) TCGA-GF-A6C9-06 7 99277546 99277546 C T CYP3A5 5'UTR 0.10 TCGA-GF-A6C9-06 7 99361517 99361517 C T CYP3A4 Silent p.Q329Q 0.15 TCGA-GF-A6C9-06 7 99364008 99364008 G A CYP3A4 Missense_Mutation p.S286F 0.15 deleterious(0) possibly_damaging(0.585) TCGA-GF-A6C9-06 7 99474602 99474602 C T OR2AE1 Missense_Mutation p.D19N 0.16 tolerated(0.7) possibly_damaging(0.714) TCGA-GF-A6C9-06 7 99489852 99489852 G A TRIM4 Silent p.L479L 0.28 TCGA-GF-A6C9-06 7 99526934 99526934 C T GJC3 Missense_Mutation p.E104K 0.07 tolerated(0.14) possibly_damaging(0.769) TCGA-GF-A6C9-06 7 99669600 99669600 C T ZNF3 Silent p.E169E 0.08 TCGA-GF-A6C9-06 7 99752611 99752611 G A C7orf43 3'UTR 0.11 TCGA-GF-A6C9-06 8 100887645 100887645 G A VPS13B Splice_Site p.X3941_splice 0.06 TCGA-GF-A6C9-06 8 104922629 104922629 G A RIMS2 Intron 0.09 TCGA-GF-A6C9-06 8 104927753 104927753 C T RIMS2 Missense_Mutation p.R615W 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 8 105361587 105361587 G A DCSTAMP Silent p.L269L 0.13 TCGA-GF-A6C9-06 8 10583685 10583685 G T SOX7 Missense_Mutation p.P296T 0.15 tolerated(0.16) probably_damaging(0.999) TCGA-GF-A6C9-06 8 106813361 106813361 C T ZFPM2 Missense_Mutation p.H351Y 0.09 deleterious(0) possibly_damaging(0.577) TCGA-GF-A6C9-06 8 106813831 106813831 C T ZFPM2 Silent p.I507I 0.11 TCGA-GF-A6C9-06 8 106814156 106814156 C T ZFPM2 Missense_Mutation p.P616S 0.09 tolerated(0.16) benign(0.005) TCGA-GF-A6C9-06 8 108276555 108276555 C T ANGPT1 Silent p.G410G 0.10 TCGA-GF-A6C9-06 8 110100404 110100404 T A TRHR Missense_Mutation p.N221K 0.23 tolerated(0.08) benign(0.089) TCGA-GF-A6C9-06 8 110457472 110457472 G A PKHD1L1 Missense_Mutation p.E1792K 0.12 tolerated(0.55) benign(0.009) TCGA-GF-A6C9-06 8 110477071 110477071 C T PKHD1L1 Silent p.F2670F 0.07 TCGA-GF-A6C9-06 8 110477449 110477449 G A PKHD1L1 Missense_Mutation p.M2796I 0.17 tolerated(0.17) benign(0) TCGA-GF-A6C9-06 8 110498879 110498879 G A PKHD1L1 Missense_Mutation p.E3237K 0.16 tolerated(0.13) benign(0.004) TCGA-GF-A6C9-06 8 110499029 110499029 G A PKHD1L1 Missense_Mutation p.E3287K 0.10 tolerated(0.76) benign(0.001) TCGA-GF-A6C9-06 8 110588104 110588104 G A SYBU Silent p.I341I 0.18 TCGA-GF-A6C9-06 8 110590218 110590218 C T SYBU Missense_Mutation p.E255K 0.06 deleterious(0) probably_damaging(0.954) TCGA-GF-A6C9-06 8 11189272 11189272 C T SLC35G5 Silent p.L219L 0.07 TCGA-GF-A6C9-06 8 113418823 113418823 G A CSMD3 Silent p.S1913S 0.14 TCGA-GF-A6C9-06 8 113599416 113599416 G A CSMD3 Missense_Mutation p.P1255L 0.12 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 8 113812430 113812430 C T CSMD3 Missense_Mutation p.E645K 0.20 tolerated(0.12) probably_damaging(0.934) TCGA-GF-A6C9-06 8 11615843 11615843 C T GATA4 Silent p.I396I 0.09 TCGA-GF-A6C9-06 8 11615844 11615844 C T GATA4 Missense_Mutation p.H397Y 0.11 tolerated(0.33) benign(0.002) TCGA-GF-A6C9-06 8 119945476 119945476 C T TNFRSF11B Missense_Mutation p.D32N 0.07 deleterious(0) probably_damaging(0.99) TCGA-GF-A6C9-06 8 120118298 120118298 G A COLEC10 Nonsense_Mutation p.W234* 0.18 TCGA-GF-A6C9-06 8 120118308 120118308 G A COLEC10 Missense_Mutation p.E238K 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-GF-A6C9-06 8 120233909 120233909 C T MAL2 Missense_Mutation p.S72F 0.08 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 8 120252445 120252445 G A MAL2 Missense_Mutation p.G115E 0.16 deleterious(0.03) probably_damaging(1) TCGA-GF-A6C9-06 8 121383575 121383575 C T COL14A1 3'UTR 0.27 TCGA-GF-A6C9-06 8 12285145 12285145 C T FAM86B2 Intron 0.12 TCGA-GF-A6C9-06 8 125015499 125015499 G A FER1L6 Missense_Mutation p.E538K 0.09 tolerated(0.3) benign(0.004) TCGA-GF-A6C9-06 8 133041385 133041385 C T OC90 Missense_Mutation p.R358K 0.10 tolerated(1) benign(0.076) TCGA-GF-A6C9-06 8 133053349 133053349 G A OC90 Silent p.L133L 0.11 TCGA-GF-A6C9-06 8 133152358 133152358 C T KCNQ3 Missense_Mutation p.M511I 0.13 tolerated(0.07) benign(0.438) TCGA-GF-A6C9-06 8 133196597 133196597 G A KCNQ3 Silent p.F165F 0.12 TCGA-GF-A6C9-06 8 134034310 134034310 C T TG Silent p.I2317I 0.19 TCGA-GF-A6C9-06 8 135649738 135649738 G A ZFAT Silent p.I138I 0.07 TCGA-GF-A6C9-06 8 139158236 139158236 C T FAM135B Missense_Mutation p.G1169E 0.20 deleterious(0.04) possibly_damaging(0.771) TCGA-GF-A6C9-06 8 139642981 139642981 C T COL22A1 Missense_Mutation p.G1207E 0.16 unknown(0) TCGA-GF-A6C9-06 8 139833587 139833587 G A COL22A1 Missense_Mutation p.A346V 0.10 unknown(0) TCGA-GF-A6C9-06 8 142225965 142225965 G A SLC45A4 Missense_Mutation p.P561S 0.10 deleterious(0.02) benign(0.233) TCGA-GF-A6C9-06 8 142228854 142228854 C T SLC45A4 Silent p.L244L 0.09 TCGA-GF-A6C9-06 8 142476601 142476601 C T MROH5 3'UTR 0.18 TCGA-GF-A6C9-06 8 144332487 144332487 C T ZFP41 Silent p.L158L 0.10 TCGA-GF-A6C9-06 8 144511643 144511643 C T MAFA Missense_Mutation p.E312K 0.23 tolerated(0.07) possibly_damaging(0.707) TCGA-GF-A6C9-06 8 144804465 144804465 C T MAPK15 3'UTR 0.13 TCGA-GF-A6C9-06 8 144940831 144940831 G A EPPK1 Silent p.L2197L 0.10 TCGA-GF-A6C9-06 8 1497628 1497628 G A DLGAP2 Missense_Mutation p.D257N 0.11 tolerated(0.07) possibly_damaging(0.821) TCGA-GF-A6C9-06 8 15519731 15519731 G A TUSC3 Missense_Mutation p.G212R 0.10 deleterious(0.01) probably_damaging(0.936) TCGA-GF-A6C9-06 8 17611493 17611493 C T MTUS1 Silent p.V608V 0.07 TCGA-GF-A6C9-06 8 17814265 17814265 C T PCM1 Missense_Mutation p.S542F 0.20 tolerated(0.1) benign(0.33) TCGA-GF-A6C9-06 8 18257841 18257841 C T NAT2 Silent p.L110L 0.10 TCGA-GF-A6C9-06 8 18258227 18258227 C T NAT2 Silent p.I238I 0.09 TCGA-GF-A6C9-06 8 18541465 18541465 G A PSD3 Intron 0.16 TCGA-GF-A6C9-06 8 18729467 18729467 C T PSD3 Missense_Mutation p.G303R 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-GF-A6C9-06 8 19813439 19813439 C T LPL Missense_Mutation p.A288V 0.08 tolerated(0.06) benign(0.248) TCGA-GF-A6C9-06 8 22432247 22432247 C T SORBS3 3'UTR 0.09 TCGA-GF-A6C9-06 8 23428990 23428990 C T SLC25A37 Silent p.S213S 0.30 TCGA-GF-A6C9-06 8 23702404 23702404 C T STC1 Missense_Mutation p.R208Q 0.15 tolerated(0.27) benign(0.018) TCGA-GF-A6C9-06 8 24209527 24209527 G A ADAM28 Missense_Mutation p.D736N 0.32 tolerated(0.27) benign(0.081) TCGA-GF-A6C9-06 8 24349530 24349530 C T ADAM7 Missense_Mutation p.P491S 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 8 24774853 24774853 G A NEFM Silent p.K495K 0.18 TCGA-GF-A6C9-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.14 deleterious(0.01) benign(0.01) TCGA-GF-A6C9-06 8 25718621 25718621 G A EBF2 Missense_Mutation p.S429F 0.16 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-GF-A6C9-06 8 27145504 27145504 G A TRIM35 Missense_Mutation p.R349C 0.12 tolerated(0.18) benign(0.015) TCGA-GF-A6C9-06 8 27456009 27456009 C T CLU Silent p.E436E 0.12 TCGA-GF-A6C9-06 8 27605730 27605730 C T CCDC25 Missense_Mutation p.E139K 0.09 deleterious(0.04) benign(0.426) TCGA-GF-A6C9-06 8 2836196 2836196 C T CSMD1 Missense_Mutation p.G2835E 0.19 probably_damaging(1) TCGA-GF-A6C9-06 8 2944669 2944669 C T CSMD1 Missense_Mutation p.R2475Q 0.10 benign(0.013) TCGA-GF-A6C9-06 8 2967740 2967740 C T CSMD1 Missense_Mutation p.G2183E 0.19 probably_damaging(1) TCGA-GF-A6C9-06 8 3000155 3000155 G A CSMD1 Missense_Mutation p.H2025Y 0.14 possibly_damaging(0.618) TCGA-GF-A6C9-06 8 30701930 30701930 G A TEX15 Missense_Mutation p.P1535L 0.06 tolerated(0.28) benign(0.035) TCGA-GF-A6C9-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.16 tolerated(1) benign(0.002) TCGA-GF-A6C9-06 8 30705811 30705811 G A TEX15 Silent p.F241F 0.18 TCGA-GF-A6C9-06 8 30982479 30982479 A G WRN Missense_Mutation p.M930V 0.22 deleterious(0.02) benign(0.05) TCGA-GF-A6C9-06 8 35425659 35425659 G A UNC5D Silent p.Q122Q 0.11 TCGA-GF-A6C9-06 8 36766833 36766833 G A KCNU1 Missense_Mutation p.R704Q 0.07 tolerated(0.05) probably_damaging(0.944) TCGA-GF-A6C9-06 8 37690635 37690635 G A GPR124 Missense_Mutation p.R402Q 0.12 tolerated(0.08) benign(0.056) TCGA-GF-A6C9-06 8 37729305 37729305 G A RAB11FIP1 Silent p.V1005V 0.11 TCGA-GF-A6C9-06 8 39521330 39521330 A T ADAM18 Missense_Mutation p.K416M 0.14 deleterious(0.02) benign(0.232) TCGA-GF-A6C9-06 8 41566361 41566361 C T ANK1 Missense_Mutation p.E678K 0.16 deleterious(0.01) benign(0.44) TCGA-GF-A6C9-06 8 41566373 41566373 G A ANK1 Silent p.L674L 0.16 TCGA-GF-A6C9-06 8 41834751 41834751 C T KAT6A Missense_Mutation p.E380K 0.08 benign(0.074) TCGA-GF-A6C9-06 8 42207536 42207536 T G POLB Missense_Mutation p.D91E 0.13 deleterious(0.02) benign(0.253) TCGA-GF-A6C9-06 8 42587644 42587644 C T CHRNB3 Silent p.S398S 0.21 TCGA-GF-A6C9-06 8 43159890 43159890 C T RNU6-104P 3'Flank 0.08 TCGA-GF-A6C9-06 8 43197445 43197445 T C POTEA RNA 0.11 TCGA-GF-A6C9-06 8 43197459 43197459 A G POTEA RNA 0.10 TCGA-GF-A6C9-06 8 49986695 49986695 G A C8orf22 Missense_Mutation p.G45R 0.13 deleterious(0) possibly_damaging(0.891) TCGA-GF-A6C9-06 8 53074095 53074095 G A ST18 Silent p.F478F 0.18 TCGA-GF-A6C9-06 8 53074101 53074101 G A ST18 Silent p.F476F 0.21 TCGA-GF-A6C9-06 8 54142288 54142288 G A OPRK1 Missense_Mutation p.P238S 0.11 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 8 55537625 55537625 G A RP1 Missense_Mutation p.E395K 0.11 tolerated(0.82) benign(0.006) TCGA-GF-A6C9-06 8 55540336 55540336 C T RP1 Silent p.F1298F 0.10 TCGA-GF-A6C9-06 8 55540348 55540348 C T RP1 Silent p.V1302V 0.10 TCGA-GF-A6C9-06 8 55540817 55540817 G A RP1 Missense_Mutation p.E1459K 0.10 deleterious(0.01) probably_damaging(0.931) TCGA-GF-A6C9-06 8 55541225 55541225 C T RP1 Missense_Mutation p.R1595W 0.08 deleterious(0) probably_damaging(0.995) TCGA-GF-A6C9-06 8 55542280 55542280 C T RP1 Silent p.F1946F 0.13 TCGA-GF-A6C9-06 8 56436522 56436522 C T XKR4 Silent p.F563F 0.11 TCGA-GF-A6C9-06 8 57228861 57228861 C T SDR16C5 Missense_Mutation p.G16R 0.09 deleterious(0.02) probably_damaging(1) TCGA-GF-A6C9-06 8 57228914 57228914 C T SDR16C5 5'UTR 0.13 TCGA-GF-A6C9-06 8 57353764 57353764 C T PENK 3'UTR 0.15 TCGA-GF-A6C9-06 8 59851870 59851870 G A TOX Silent p.S134S 0.20 TCGA-GF-A6C9-06 8 6302298 6302298 C T MCPH1 Missense_Mutation p.S352F 0.14 tolerated(0.08) probably_damaging(0.994) TCGA-GF-A6C9-06 8 67342133 67342133 C T RRS1 Missense_Mutation p.P256L 0.15 deleterious(0.05) possibly_damaging(0.496) TCGA-GF-A6C9-06 8 67356917 67356917 C T ADHFE1 Missense_Mutation p.S96F 0.09 deleterious(0) possibly_damaging(0.882) TCGA-GF-A6C9-06 8 68995569 68995569 C T PREX2 Missense_Mutation p.S658L 0.16 deleterious(0.03) benign(0.001) TCGA-GF-A6C9-06 8 69002947 69002947 G A PREX2 Silent p.T749T 0.15 TCGA-GF-A6C9-06 8 69030850 69030850 C T PREX2 Missense_Mutation p.S1131L 0.12 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-GF-A6C9-06 8 70591657 70591657 G A SLCO5A1 Silent p.F660F 0.08 TCGA-GF-A6C9-06 8 70650417 70650417 C T SLCO5A1 Silent p.R427R 0.16 TCGA-GF-A6C9-06 8 72184056 72184056 C T EYA1 Silent p.G301G 0.09 TCGA-GF-A6C9-06 8 72211898 72211898 G A EYA1 Missense_Mutation p.S205F 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-GF-A6C9-06 8 73480062 73480062 A T KCNB2 Missense_Mutation p.K31N 0.10 deleterious(0) probably_damaging(0.979) TCGA-GF-A6C9-06 8 73848526 73848526 G A KCNB2 Silent p.L312L 0.14 TCGA-GF-A6C9-06 8 73848969 73848969 G A KCNB2 Missense_Mutation p.R460Q 0.17 tolerated(0.07) possibly_damaging(0.611) TCGA-GF-A6C9-06 8 74894437 74894437 T C TMEM70 3'UTR 0.36 TCGA-GF-A6C9-06 8 76470846 76470846 A G HNF4G Missense_Mutation p.E266G 0.07 deleterious(0) possibly_damaging(0.88) TCGA-GF-A6C9-06 8 76471044 76471044 G A HNF4G Missense_Mutation p.G289R 0.18 deleterious(0) probably_damaging(0.979) TCGA-GF-A6C9-06 8 77616639 77616639 C T ZFHX4 Missense_Mutation p.P106S 0.10 possibly_damaging(0.803) TCGA-GF-A6C9-06 8 77616708 77616708 G A ZFHX4 Missense_Mutation p.G129R 0.21 probably_damaging(0.979) TCGA-GF-A6C9-06 8 77617425 77617425 C T ZFHX4 Missense_Mutation p.H368Y 0.14 benign(0.291) TCGA-GF-A6C9-06 8 77690583 77690583 G A ZFHX4 Missense_Mutation p.R1078Q 0.06 benign(0.417) TCGA-GF-A6C9-06 8 77763880 77763880 G A ZFHX4 Missense_Mutation p.E1575K 0.19 possibly_damaging(0.486) TCGA-GF-A6C9-06 8 77764322 77764322 T A ZFHX4 Missense_Mutation p.F1722Y 0.09 benign(0.294) TCGA-GF-A6C9-06 8 77895753 77895753 G A PEX2 Missense_Mutation p.S221F 0.11 tolerated(0.16) benign(0.049) TCGA-GF-A6C9-06 8 80965600 80965600 G A TPD52 Silent p.I107I 0.10 TCGA-GF-A6C9-06 8 8176715 8176715 G A SGK223 Missense_Mutation p.P1057L 0.18 probably_damaging(0.998) TCGA-GF-A6C9-06 8 82752065 82752065 T C SNX16 Missense_Mutation p.K53E 0.11 deleterious_low_confidence(0.02) benign(0.371) TCGA-GF-A6C9-06 8 87235216 87235216 C T SLC7A13 Missense_Mutation p.E268K 0.18 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 8 87738790 87738790 C T CNGB3 Missense_Mutation p.E103K 0.07 tolerated(0.29) benign(0.007) TCGA-GF-A6C9-06 8 88884955 88884955 G A DCAF4L2 3'UTR 0.25 TCGA-GF-A6C9-06 8 94815880 94815880 C T TMEM67 Nonsense_Mutation p.R764* 0.10 TCGA-GF-A6C9-06 8 95186402 95186402 G A CDH17 Missense_Mutation p.L171F 0.14 tolerated(0.71) benign(0.042) TCGA-GF-A6C9-06 8 95201506 95201506 C T CDH17 Missense_Mutation p.G20E 0.13 deleterious(0.05) benign(0.393) TCGA-GF-A6C9-06 8 95658439 95658439 G A ESRP1 Missense_Mutation p.R140Q 0.09 deleterious(0) probably_damaging(0.922) TCGA-GF-A6C9-06 8 95680313 95680313 G A ESRP1 Silent p.K356K 0.12 TCGA-GF-A6C9-06 8 99102183 99102183 G A C8orf47 Missense_Mutation p.R313Q 0.10 deleterious(0.02) benign(0.16) TCGA-GF-A6C9-06 9 101168367 101168367 A C GABBR2 Missense_Mutation p.F431L 0.19 deleterious(0.04) benign(0.004) TCGA-GF-A6C9-06 9 103348477 103348477 G A MURC Missense_Mutation p.R280Q 0.16 tolerated(0.1) benign(0.01) TCGA-GF-A6C9-06 9 105765477 105765477 C T CYLC2 Missense_Mutation p.P38S 0.08 deleterious(0.03) probably_damaging(0.984) TCGA-GF-A6C9-06 9 107578611 107578611 G A ABCA1 Missense_Mutation p.S1184F 0.21 tolerated(0.65) probably_damaging(0.921) TCGA-GF-A6C9-06 9 109687800 109687800 C T ZNF462 Missense_Mutation p.P536L 0.22 possibly_damaging(0.713) TCGA-GF-A6C9-06 9 112141880 112141880 G A PTPN3 Missense_Mutation p.R900C 0.16 deleterious(0) probably_damaging(0.976) TCGA-GF-A6C9-06 9 113169835 113169835 G A SVEP1 Missense_Mutation p.S2682L 0.23 benign(0.004) TCGA-GF-A6C9-06 9 113704166 113704166 C T LPAR1 Missense_Mutation p.G110R 0.11 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 9 113734468 113734468 C T LPAR1 5'UTR 0.11 TCGA-GF-A6C9-06 9 114332480 114332480 G A PTGR1 Missense_Mutation p.P257L 0.30 tolerated(0.72) benign(0.009) TCGA-GF-A6C9-06 9 114990732 114990732 G A PTBP3 Nonsense_Mutation p.R393* 0.14 TCGA-GF-A6C9-06 9 116812554 116812554 C T ZNF618 3'UTR 0.27 TCGA-GF-A6C9-06 9 117228572 117228572 G A DFNB31 Missense_Mutation p.S313F 0.13 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 9 117692467 117692467 G A TNFSF8 Silent p.F39F 0.29 TCGA-GF-A6C9-06 9 118997831 118997831 C T PAPPA Missense_Mutation p.P883S 0.17 deleterious(0.01) possibly_damaging(0.641) TCGA-GF-A6C9-06 9 119461105 119461105 G A TRIM32 Missense_Mutation p.G362R 0.25 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 9 119461141 119461141 C T TRIM32 Missense_Mutation p.P374S 0.20 tolerated(0.19) probably_damaging(0.986) TCGA-GF-A6C9-06 9 120470978 120470978 C T TLR4 Silent p.F77F 0.19 TCGA-GF-A6C9-06 9 125143694 125143694 C T PTGS1 Silent p.L181L 0.12 TCGA-GF-A6C9-06 9 125281957 125281957 G A OR1J4 Missense_Mutation p.D180N 0.26 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-GF-A6C9-06 9 125330069 125330069 G A OR1L8 Missense_Mutation p.P230S 0.30 tolerated(0.06) possibly_damaging(0.654) TCGA-GF-A6C9-06 9 125437808 125437808 A C OR1L3 Missense_Mutation p.T134P 0.08 deleterious(0) benign(0.157) TCGA-GF-A6C9-06 9 125563283 125563283 G A OR1K1 Nonsense_Mutation p.W294* 0.10 TCGA-GF-A6C9-06 9 126146083 126146083 C T DENND1A Missense_Mutation p.D563N 0.13 deleterious(0.01) benign(0.131) TCGA-GF-A6C9-06 9 130287386 130287386 G A FAM129B Silent p.I124I 0.17 TCGA-GF-A6C9-06 9 131480861 131480861 C T PKN3 Silent p.A694A 0.08 TCGA-GF-A6C9-06 9 131515099 131515099 G A ZER1 Missense_Mutation p.S259F 0.15 deleterious(0.04) possibly_damaging(0.556) TCGA-GF-A6C9-06 9 131553020 131553020 C T TBC1D13 Missense_Mutation p.P35L 0.08 deleterious(0) probably_damaging(0.931) TCGA-GF-A6C9-06 9 131755900 131755900 C T NUP188 Missense_Mutation p.R982C 0.13 tolerated(0.19) probably_damaging(0.987) TCGA-GF-A6C9-06 9 133948072 133948072 C T LAMC3 Silent p.A1089A 0.14 TCGA-GF-A6C9-06 9 134039325 134039325 C T NUP214 Missense_Mutation p.S931F 0.22 possibly_damaging(0.879) TCGA-GF-A6C9-06 9 135145026 135145026 G A SETX Silent p.I2421I 0.18 TCGA-GF-A6C9-06 9 135470257 135470257 A G DDX31 Missense_Mutation p.V851A 0.10 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-GF-A6C9-06 9 135864540 135864540 C T GFI1B Silent p.F201F 0.16 TCGA-GF-A6C9-06 9 136131695 136131695 G A RP11-430N14.4 5'Flank 0.20 TCGA-GF-A6C9-06 9 136265574 136265574 T A C9orf96 Missense_Mutation p.V372E 0.27 deleterious(0) possibly_damaging(0.707) TCGA-GF-A6C9-06 9 136529109 136529109 C T SARDH Missense_Mutation p.D887N 0.27 tolerated(0.44) benign(0.012) TCGA-GF-A6C9-06 9 137642638 137642638 C T COL5A1 Silent p.F524F 0.09 TCGA-GF-A6C9-06 9 137674548 137674548 G A COL5A1 Missense_Mutation p.M822I 0.08 unknown(0) TCGA-GF-A6C9-06 9 137707786 137707786 A T COL5A1 Missense_Mutation p.Q1358H 0.10 unknown(0) TCGA-GF-A6C9-06 9 137708903 137708903 C T COL5A1 Missense_Mutation p.P1385L 0.25 unknown(0) TCGA-GF-A6C9-06 9 138516048 138516048 G A GLT6D1 Silent p.F242F 0.21 TCGA-GF-A6C9-06 9 138714533 138714533 G A CAMSAP1 Silent p.F658F 0.27 TCGA-GF-A6C9-06 9 139302278 139302278 C T SDCCAG3 Silent p.K134K 0.27 TCGA-GF-A6C9-06 9 139391252 139391252 C T NOTCH1 Silent p.R2313R 0.18 TCGA-GF-A6C9-06 9 139912294 139912294 G A ABCA2 Missense_Mutation p.S719F 0.17 deleterious(0) possibly_damaging(0.747) TCGA-GF-A6C9-06 9 14146769 14146769 C T NFIB Missense_Mutation p.E282K 0.14 tolerated(0.14) benign(0.138) TCGA-GF-A6C9-06 9 14819254 14819254 C T FREM1 Missense_Mutation p.D842N 0.09 deleterious(0) probably_damaging(0.932) TCGA-GF-A6C9-06 9 14851568 14851568 C T FREM1 Missense_Mutation p.G289E 0.11 deleterious(0) benign(0.05) TCGA-GF-A6C9-06 9 17464556 17464556 C T CNTLN Nonsense_Mutation p.R1156* 0.09 TCGA-GF-A6C9-06 9 32631910 32631910 T A TAF1L Missense_Mutation p.K1223I 0.23 tolerated(0.08) benign(0.01) TCGA-GF-A6C9-06 9 33342786 33342786 C T NFX1 Missense_Mutation p.R720C 0.35 deleterious(0.02) possibly_damaging(0.608) TCGA-GF-A6C9-06 9 33467231 33467231 G A NOL6 Silent p.S585S 0.22 TCGA-GF-A6C9-06 9 33796694 33796694 G A PRSS3 Missense_Mutation p.E89K 0.20 tolerated(0.81) benign(0.011) TCGA-GF-A6C9-06 9 34513169 34513169 G A DNAI1 Missense_Mutation p.E517K 0.09 deleterious(0) probably_damaging(0.974) TCGA-GF-A6C9-06 9 34513170 34513170 A T DNAI1 Missense_Mutation p.E517V 0.08 deleterious(0) possibly_damaging(0.847) TCGA-GF-A6C9-06 9 34517351 34517351 G A DNAI1 Silent p.K629K 0.12 TCGA-GF-A6C9-06 9 37518344 37518344 C T FBXO10 Silent p.Q764Q 0.27 TCGA-GF-A6C9-06 9 39085887 39085887 G A CNTNAP3 Intron 0.20 TCGA-GF-A6C9-06 9 39178269 39178269 A T CNTNAP3 Silent p.S209S 0.20 TCGA-GF-A6C9-06 9 39890224 39890224 G A SPATA31A2 Missense_Mutation p.E1071K 0.26 tolerated(0.79) benign(0.379) TCGA-GF-A6C9-06 9 4118530 4118530 G A GLIS3 Silent p.F316F 0.13 TCGA-GF-A6C9-06 9 4286286 4286286 G A GLIS3 Missense_Mutation p.S47L 0.19 deleterious(0.01) benign(0.016) TCGA-GF-A6C9-06 9 429765 429765 C T DOCK8 Missense_Mutation p.H1513Y 0.14 deleterious(0) possibly_damaging(0.458) TCGA-GF-A6C9-06 9 6589218 6589218 G A GLDC Silent p.F519F 0.11 TCGA-GF-A6C9-06 9 71437568 71437568 G A PIP5K1B Missense_Mutation p.G13E 0.17 tolerated_low_confidence(0.17) benign(0.021) TCGA-GF-A6C9-06 9 72521021 72521021 C T C9orf135 Missense_Mutation p.P220L 0.21 tolerated(0.06) benign(0.002) TCGA-GF-A6C9-06 9 74361174 74361174 C T TMEM2 Missense_Mutation p.D139N 0.20 tolerated(0.3) benign(0.284) TCGA-GF-A6C9-06 9 75773500 75773500 G A ANXA1 Missense_Mutation p.E17K 0.20 tolerated(0.73) benign(0.015) TCGA-GF-A6C9-06 9 77339430 77339430 G A TRPM6 3'UTR 0.22 TCGA-GF-A6C9-06 9 77354893 77354893 C T TRPM6 Missense_Mutation p.E1745K 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 9 78794543 78794543 C T PCSK5 Silent p.G644G 0.09 TCGA-GF-A6C9-06 9 79118200 79118200 G A GCNT1 Silent p.Q301Q 0.13 TCGA-GF-A6C9-06 9 79966339 79966339 C T VPS13A Missense_Mutation p.H2466Y 0.22 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 9 82322052 82322052 G A TLE4 Intron 0.20 TCGA-GF-A6C9-06 9 8404567 8404567 G A PTPRD Missense_Mutation p.H1394Y 0.12 deleterious(0.01) benign(0.007) TCGA-GF-A6C9-06 9 84532010 84532010 T C SPATA31D5P RNA 0.11 TCGA-GF-A6C9-06 9 84607406 84607406 C T SPATA31D1 Missense_Mutation p.P674L 0.07 deleterious(0) probably_damaging(0.996) TCGA-GF-A6C9-06 9 8492945 8492945 G A PTPRD Missense_Mutation p.S795F 0.10 tolerated(0.11) benign(0.269) TCGA-GF-A6C9-06 9 91660736 91660736 C T SHC3 Missense_Mutation p.E376K 0.13 tolerated(0.5) possibly_damaging(0.858) TCGA-GF-A6C9-06 9 91661873 91661873 C T SHC3 Silent p.E333E 0.10 TCGA-GF-A6C9-06 9 91947859 91947859 G A SECISBP2 Missense_Mutation p.V280I 0.17 tolerated(0.2) benign(0.013) TCGA-GF-A6C9-06 9 95609032 95609032 G A ZNF484 Silent p.L681L 0.22 TCGA-GF-A6C9-06 9 95838133 95838133 C T SUSD3 Silent p.S52S 0.15 TCGA-GF-A6C9-06 9 96061529 96061529 G A WNK2 Missense_Mutation p.G2071E 0.19 unknown(0) TCGA-GF-A6C9-06 9 99296284 99296284 G A CDC14B Missense_Mutation p.P291S 0.17 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 9 99799644 99799644 G A CTSV Nonsense_Mutation p.R96* 0.22 TCGA-GF-A6C9-06 X 100103676 100103676 G A NOX1 Missense_Mutation p.S504F 0.26 tolerated(1) benign(0.008) TCGA-GF-A6C9-06 X 100492726 100492726 G A DRP2 Missense_Mutation p.D134N 0.20 deleterious(0) possibly_damaging(0.759) TCGA-GF-A6C9-06 X 100547861 100547861 G A TAF7L Missense_Mutation p.P58L 0.26 tolerated(0.09) benign(0.014) TCGA-GF-A6C9-06 X 100626668 100626668 C T BTK Missense_Mutation p.E88K 0.27 tolerated(0.76) benign(0.031) TCGA-GF-A6C9-06 X 101396043 101396043 C T TCEAL6 Silent p.Q87Q 0.17 TCGA-GF-A6C9-06 X 102004554 102004554 C T BHLHB9 Missense_Mutation p.P211S 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-GF-A6C9-06 X 102337715 102337715 C T NXF3 Silent p.L251L 0.25 TCGA-GF-A6C9-06 X 102967189 102967189 G A TMEM31 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.216) TCGA-GF-A6C9-06 X 103349554 103349554 G A SLC25A53 Silent p.A129A 0.22 TCGA-GF-A6C9-06 X 103494988 103494988 A - ESX1 Frame_Shift_Del p.V381Gfs*32 0.22 TCGA-GF-A6C9-06 X 104440244 104440244 A T IL1RAPL2 Missense_Mutation p.Y57F 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 X 104463987 104463987 G A TEX13A Missense_Mutation p.P297S 0.30 deleterious(0.03) possibly_damaging(0.857) TCGA-GF-A6C9-06 X 104999240 104999240 C T IL1RAPL2 Missense_Mutation p.P421L 0.19 tolerated(0.12) benign(0.21) TCGA-GF-A6C9-06 X 105011256 105011256 G A IL1RAPL2 Missense_Mutation p.E555K 0.25 deleterious(0.05) probably_damaging(0.994) TCGA-GF-A6C9-06 X 105179309 105179309 C T NRK Missense_Mutation p.S1217F 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-GF-A6C9-06 X 105279178 105279178 T A SERPINA7 Missense_Mutation p.E274V 0.29 deleterious(0) possibly_damaging(0.667) TCGA-GF-A6C9-06 X 105280897 105280897 G A SERPINA7 Silent p.F51F 0.20 TCGA-GF-A6C9-06 X 105281150 105281150 C T SERPINA7 5'UTR 0.18 TCGA-GF-A6C9-06 X 105937241 105937241 G A RNF128 Silent p.Q3Q 0.17 TCGA-GF-A6C9-06 X 105937347 105937347 G A RNF128 Missense_Mutation p.E12K 0.22 tolerated(0.86) benign(0.002) TCGA-GF-A6C9-06 X 106016288 106016288 C T RNF128 Silent p.F210F 0.22 TCGA-GF-A6C9-06 X 106184786 106184786 G A MORC4 Missense_Mutation p.R913C 0.15 deleterious(0) probably_damaging(0.927) TCGA-GF-A6C9-06 X 106465972 106465972 C T PIH1D3 Intron 0.14 TCGA-GF-A6C9-06 X 106844242 106844242 G A FRMPD3 Missense_Mutation p.M1024I 0.44 tolerated_low_confidence(0.36) benign(0) TCGA-GF-A6C9-06 X 107408188 107408188 C T COL4A6 Missense_Mutation p.G1298R 0.36 probably_damaging(1) TCGA-GF-A6C9-06 X 107430421 107430421 C T COL4A6 Missense_Mutation p.G620E 0.27 probably_damaging(1) TCGA-GF-A6C9-06 X 107815055 107815055 C T COL4A5 Silent p.I151I 0.33 TCGA-GF-A6C9-06 X 107840617 107840617 G A COL4A5 Missense_Mutation p.G533E 0.14 unknown(0) TCGA-GF-A6C9-06 X 107841957 107841957 G A COL4A5 Missense_Mutation p.R602K 0.20 unknown(0) TCGA-GF-A6C9-06 X 107911614 107911614 G A COL4A5 Missense_Mutation p.E1224K 0.24 unknown(0) TCGA-GF-A6C9-06 X 107930850 107930850 G A COL4A5 Missense_Mutation p.G1485E 0.22 probably_damaging(0.997) TCGA-GF-A6C9-06 X 108684707 108684707 C T GUCY2F Missense_Mutation p.G525E 0.23 tolerated(1) benign(0.36) TCGA-GF-A6C9-06 X 108697016 108697016 C T GUCY2F Missense_Mutation p.E369K 0.19 tolerated(0.8) benign(0.017) TCGA-GF-A6C9-06 X 108902601 108902601 G A ACSL4 Nonsense_Mutation p.R654* 0.14 TCGA-GF-A6C9-06 X 110366388 110366388 T C PAK3 Silent p.N19N 0.19 TCGA-GF-A6C9-06 X 110439090 110439090 C T PAK3 Silent p.F413F 0.23 TCGA-GF-A6C9-06 X 110544878 110544878 G A DCX 3'UTR 0.09 TCGA-GF-A6C9-06 X 110968173 110968173 C T ALG13 Missense_Mutation p.P538L 0.29 deleterious(0.03) possibly_damaging(0.655) TCGA-GF-A6C9-06 X 111020119 111020119 C T TRPC5 Missense_Mutation p.D782N 0.24 tolerated(0.12) benign(0.065) TCGA-GF-A6C9-06 X 111078262 111078262 C T TRPC5 Missense_Mutation p.E595K 0.23 tolerated(0.53) benign(0.142) TCGA-GF-A6C9-06 X 111155560 111155560 G A TRPC5 Silent p.L287L 0.15 TCGA-GF-A6C9-06 X 114082606 114082606 G A HTR2C Nonsense_Mutation p.W130* 0.21 TCGA-GF-A6C9-06 X 114141636 114141636 C T HTR2C Silent p.L345L 0.26 TCGA-GF-A6C9-06 X 114245204 114245204 C T IL13RA2 Intron 0.25 TCGA-GF-A6C9-06 X 114953374 114953374 C T RP1-241P17.4 Missense_Mutation p.R59K 0.14 deleterious(0) benign(0.321) TCGA-GF-A6C9-06 X 115304077 115304077 C T AGTR2 Nonsense_Mutation p.R182* 0.24 TCGA-GF-A6C9-06 X 115304184 115304184 C T AGTR2 Silent p.I217I 0.25 TCGA-GF-A6C9-06 X 115573855 115573855 G A SLC6A14 Missense_Mutation p.G116D 0.15 deleterious(0.01) probably_damaging(1) TCGA-GF-A6C9-06 X 115576208 115576208 C T SLC6A14 Missense_Mutation p.S260L 0.19 deleterious(0) possibly_damaging(0.869) TCGA-GF-A6C9-06 X 117033271 117033271 G A KLHL13 Missense_Mutation p.T526I 0.25 tolerated(0.32) possibly_damaging(0.593) TCGA-GF-A6C9-06 X 117035910 117035910 C T KLHL13 Splice_Site p.X459_splice 0.43 TCGA-GF-A6C9-06 X 117043303 117043303 G A KLHL13 Silent p.L446L 0.22 TCGA-GF-A6C9-06 X 117043419 117043419 C T KLHL13 Missense_Mutation p.G407E 0.20 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 X 117079569 117079569 G A KLHL13 Intron 0.50 TCGA-GF-A6C9-06 X 117727237 117727237 C T DOCK11 Missense_Mutation p.H734Y 0.13 deleterious(0) probably_damaging(0.931) TCGA-GF-A6C9-06 X 118221668 118221668 C T KIAA1210 Silent p.E1175E 0.24 TCGA-GF-A6C9-06 X 118221852 118221852 G A KIAA1210 Missense_Mutation p.S1114F 0.20 tolerated(0.18) probably_damaging(0.971) TCGA-GF-A6C9-06 X 122459896 122459896 G A GRIA3 Silent p.A176A 0.32 TCGA-GF-A6C9-06 X 123514580 123514580 C T TENM1 Missense_Mutation p.E2669K 0.14 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 X 123517667 123517667 C T TENM1 Missense_Mutation p.D2372N 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-GF-A6C9-06 X 123540270 123540270 G T TENM1 Missense_Mutation p.D1684E 0.30 tolerated(0.4) benign(0.025) TCGA-GF-A6C9-06 X 123787621 123787621 C T TENM1 Missense_Mutation p.G394E 0.30 tolerated_low_confidence(0.12) benign(0.392) TCGA-GF-A6C9-06 X 124028187 124028187 G A TENM1 Missense_Mutation p.P165S 0.27 tolerated_low_confidence(0.07) benign(0.001) TCGA-GF-A6C9-06 X 125298729 125298729 G A DCAF12L2 Silent p.S393S 0.10 TCGA-GF-A6C9-06 X 127185837 127185837 C T ACTRT1 Missense_Mutation p.E117K 0.26 tolerated(0.35) benign(0.009) TCGA-GF-A6C9-06 X 128582375 128582375 C T SMARCA1 Missense_Mutation p.E1026K 0.18 deleterious(0) possibly_damaging(0.745) TCGA-GF-A6C9-06 X 128695239 128695239 G A OCRL Missense_Mutation p.R303K 0.12 tolerated(0.95) benign(0.011) TCGA-GF-A6C9-06 X 12906682 12906682 C T TLR7 Missense_Mutation p.P1019S 0.31 deleterious(0) probably_damaging(0.997) TCGA-GF-A6C9-06 X 12938027 12938027 C T TLR8 Nonsense_Mutation p.R290* 0.21 TCGA-GF-A6C9-06 X 130215585 130215585 C T ARHGAP36 5'UTR 0.26 TCGA-GF-A6C9-06 X 130215813 130215813 G A ARHGAP36 Silent p.L58L 0.29 TCGA-GF-A6C9-06 X 130218268 130218268 C T ARHGAP36 Missense_Mutation p.S212F 0.31 deleterious(0) possibly_damaging(0.797) TCGA-GF-A6C9-06 X 130408592 130408592 C T IGSF1 Silent p.L1249L 0.31 TCGA-GF-A6C9-06 X 130408827 130408827 G A IGSF1 Missense_Mutation p.S1171L 0.20 deleterious(0.01) possibly_damaging(0.575) TCGA-GF-A6C9-06 X 130408988 130408988 C T IGSF1 Missense_Mutation p.E1158K 0.16 tolerated(0.05) benign(0.025) TCGA-GF-A6C9-06 X 130410050 130410050 G A IGSF1 Silent p.F932F 0.30 TCGA-GF-A6C9-06 X 130412677 130412677 A C IGSF1 Missense_Mutation p.F605C 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-GF-A6C9-06 X 130423234 130423234 C T IGSF1 5'UTR 0.08 TCGA-GF-A6C9-06 X 130678593 130678593 C T OR13H1 Silent p.S182S 0.21 TCGA-GF-A6C9-06 X 131202562 131202562 C T MST4 Missense_Mutation p.P188S 0.27 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 131212908 131212908 C T FRMD7 Silent p.R379R 0.19 TCGA-GF-A6C9-06 X 131219668 131219668 C T FRMD7 Missense_Mutation p.D196N 0.26 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 X 131762655 131762655 C T HS6ST2 Missense_Mutation p.E512K 0.20 tolerated(0.17) benign(0.003) TCGA-GF-A6C9-06 X 132092370 132092370 G A HS6ST2 Silent p.F87F 0.17 TCGA-GF-A6C9-06 X 132160819 132160819 G A USP26 Missense_Mutation p.S477L 0.23 tolerated(1) benign(0.004) TCGA-GF-A6C9-06 X 132162218 132162218 G A USP26 Nonsense_Mutation p.Q11* 0.21 TCGA-GF-A6C9-06 X 132439914 132439914 G A GPC4 Silent p.L347L 0.17 TCGA-GF-A6C9-06 X 134427866 134427866 G A ZNF75D Silent p.I67I 0.21 TCGA-GF-A6C9-06 X 135405491 135405491 G A GPR112 Missense_Mutation p.E209K 0.20 tolerated(0.1) benign(0.068) TCGA-GF-A6C9-06 X 135429121 135429121 C T GPR112 Missense_Mutation p.R1086C 0.15 deleterious(0.03) benign(0.004) TCGA-GF-A6C9-06 X 135429879 135429879 G A GPR112 Silent p.Q1338Q 0.17 TCGA-GF-A6C9-06 X 135431264 135431264 C T GPR112 Missense_Mutation p.S1800F 0.23 deleterious(0.03) possibly_damaging(0.624) TCGA-GF-A6C9-06 X 135433610 135433610 C T GPR112 Silent p.S2244S 0.24 TCGA-GF-A6C9-06 X 135480119 135480119 C T GPR112 Missense_Mutation p.S2755F 0.25 deleterious(0) probably_damaging(0.993) TCGA-GF-A6C9-06 X 135496363 135496363 G A GPR112 Missense_Mutation p.G3028R 0.25 tolerated(1) benign(0.001) TCGA-GF-A6C9-06 X 135496364 135496364 G A GPR112 Missense_Mutation p.G3028E 0.25 deleterious(0) benign(0.052) TCGA-GF-A6C9-06 X 13621514 13621514 C T EGFL6 Missense_Mutation p.S160F 0.24 deleterious(0) probably_damaging(0.999) TCGA-GF-A6C9-06 X 138644168 138644168 G A F9 Missense_Mutation p.G442R 0.09 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 138667284 138667284 A T MCF2 Missense_Mutation p.S972T 0.21 tolerated(0.06) benign(0.017) TCGA-GF-A6C9-06 X 139866047 139866047 C T CDR1 Missense_Mutation p.R162K 0.18 tolerated(0.24) benign(0.14) TCGA-GF-A6C9-06 X 140969511 140969511 C T MAGEC3 Silent p.L280L 0.25 TCGA-GF-A6C9-06 X 140983291 140983291 G A MAGEC3 Missense_Mutation p.E357K 0.26 tolerated(0.07) benign(0.292) TCGA-GF-A6C9-06 X 140993389 140993389 C T MAGEC1 Missense_Mutation p.L67F 0.08 tolerated_low_confidence(0.14) possibly_damaging(0.587) TCGA-GF-A6C9-06 X 140993832 140993832 C T MAGEC1 Silent p.F214F 0.25 TCGA-GF-A6C9-06 X 140994283 140994283 T G MAGEC1 Missense_Mutation p.F365V 0.28 tolerated_low_confidence(0.14) benign(0.307) TCGA-GF-A6C9-06 X 140995073 140995073 C T MAGEC1 Missense_Mutation p.P628L 0.11 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-GF-A6C9-06 X 140995137 140995137 G A MAGEC1 Silent p.Q649Q 0.15 TCGA-GF-A6C9-06 X 140995950 140995950 C T MAGEC1 Silent p.L920L 0.25 TCGA-GF-A6C9-06 X 140996298 140996298 C T MAGEC1 Silent p.A1036A 0.11 TCGA-GF-A6C9-06 X 140996561 140996561 C T MAGEC1 Missense_Mutation p.S1124L 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-GF-A6C9-06 X 141291766 141291766 G A MAGEC2 Missense_Mutation p.P3L 0.24 tolerated_low_confidence(1) benign(0) TCGA-GF-A6C9-06 X 142596739 142596739 C T SPANXN3 Missense_Mutation p.E111K 0.22 tolerated_low_confidence(0.18) benign(0.016) TCGA-GF-A6C9-06 X 142717196 142717196 C T SLITRK4 Missense_Mutation p.E577K 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-GF-A6C9-06 X 142803841 142803841 G A SPANXN2 5'UTR 0.19 TCGA-GF-A6C9-06 X 147084830 147084830 C T FMR1NB Silent p.F129F 0.24 TCGA-GF-A6C9-06 X 147967479 147967479 C T AFF2 Silent p.T441T 0.24 TCGA-GF-A6C9-06 X 148044410 148044410 C T AFF2 Silent p.T952T 0.18 TCGA-GF-A6C9-06 X 148055079 148055079 G A AFF2 Missense_Mutation p.D1116N 0.27 tolerated(0.06) possibly_damaging(0.705) TCGA-GF-A6C9-06 X 150793950 150793950 G A PASD1 Missense_Mutation p.E193K 0.20 tolerated(0.37) benign(0.028) TCGA-GF-A6C9-06 X 150840164 150840164 G A PASD1 Silent p.K450K 0.20 TCGA-GF-A6C9-06 X 150840191 150840191 T A PASD1 Silent p.S459S 0.30 TCGA-GF-A6C9-06 X 150868527 150868527 T C PRRG3 Missense_Mutation p.F23L 0.26 tolerated(0.19) possibly_damaging(0.661) TCGA-GF-A6C9-06 X 150909266 150909266 G A CNGA2 Silent p.K125K 0.12 TCGA-GF-A6C9-06 X 150912754 150912754 G A CNGA2 Missense_Mutation p.M593I 0.22 tolerated(0.18) benign(0) TCGA-GF-A6C9-06 X 151092619 151092619 G A MAGEA4 Missense_Mutation p.M161I 0.09 tolerated(0.38) benign(0.001) TCGA-GF-A6C9-06 X 151138714 151138714 G A GABRE Missense_Mutation p.R73C 0.22 deleterious(0.02) possibly_damaging(0.679) TCGA-GF-A6C9-06 X 151303337 151303337 C T MAGEA10 Missense_Mutation p.M252I 0.26 tolerated(0.55) benign(0.122) TCGA-GF-A6C9-06 X 151336775 151336775 G A GABRA3 Silent p.A468A 0.22 TCGA-GF-A6C9-06 X 151393283 151393283 C T GABRA3 Missense_Mutation p.E196K 0.15 tolerated(0.15) possibly_damaging(0.792) TCGA-GF-A6C9-06 X 151393284 151393284 C T GABRA3 Silent p.L195L 0.15 TCGA-GF-A6C9-06 X 151869605 151869605 C T MAGEA6 Missense_Mutation p.P99S 0.23 tolerated(0.06) benign(0.04) TCGA-GF-A6C9-06 X 151869776 151869776 G A MAGEA6 Missense_Mutation p.D156N 0.22 deleterious(0) benign(0.005) TCGA-GF-A6C9-06 X 151869882 151869882 G A MAGEA6 Missense_Mutation p.G191D 0.17 tolerated(0.26) benign(0.107) TCGA-GF-A6C9-06 X 151909177 151909177 A C CSAG1 Missense_Mutation p.K69T 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.888) TCGA-GF-A6C9-06 X 151935417 151935417 G A MAGEA3 Silent p.F250F 0.21 TCGA-GF-A6C9-06 X 153043844 153043844 C T PLXNB3 Intron 0.16 TCGA-GF-A6C9-06 X 153219622 153219622 G A HCFC1 Missense_Mutation p.P1410S 0.19 tolerated_low_confidence(0.12) benign(0.001) TCGA-GF-A6C9-06 X 153418575 153418575 G A OPN1LW Nonsense_Mutation p.W191* 0.11 TCGA-GF-A6C9-06 X 153421922 153421922 C T OPN1LW Missense_Mutation p.H300Y 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-GF-A6C9-06 X 153694312 153694312 C T PLXNA3 Missense_Mutation p.T856I 0.17 deleterious(0) probably_damaging(0.979) TCGA-GF-A6C9-06 X 154290181 154290181 G A CMC4 Silent p.V48V 0.27 TCGA-GF-A6C9-06 X 1561106 1561106 G A ASMTL Silent p.A66A 0.21 TCGA-GF-A6C9-06 X 18646617 18646617 C T CDKL5 Missense_Mutation p.R875W 0.28 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-GF-A6C9-06 X 23410681 23410681 C T PTCHD1 Missense_Mutation p.S349F 0.39 deleterious(0) probably_damaging(0.998) TCGA-GF-A6C9-06 X 2408224 2408224 G A ZBED1 Silent p.A179A 0.15 TCGA-GF-A6C9-06 X 26212832 26212832 C T MAGEB6 Missense_Mutation p.S290L 0.32 tolerated(0.25) probably_damaging(0.988) TCGA-GF-A6C9-06 X 26212923 26212923 C T MAGEB6 Silent p.I320I 0.24 TCGA-GF-A6C9-06 X 29973377 29973377 G A IL1RAPL1 Missense_Mutation p.E511K 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-GF-A6C9-06 X 30327045 30327045 G A NR0B1 Missense_Mutation p.L146F 0.16 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-GF-A6C9-06 X 3235794 3235794 C T MXRA5 Silent p.G1976G 0.19 TCGA-GF-A6C9-06 X 32407761 32407761 G A DMD Nonsense_Mutation p.R1459* 0.26 TCGA-GF-A6C9-06 X 34148247 34148247 G A FAM47A Missense_Mutation p.P717S 0.34 deleterious(0.02) probably_damaging(0.986) TCGA-GF-A6C9-06 X 34148678 34148678 G A FAM47A Missense_Mutation p.P573L 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-GF-A6C9-06 X 34150389 34150389 C T FAM47A Missense_Mutation p.D3N 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-GF-A6C9-06 X 34961413 34961413 C T FAM47B Silent p.P155P 0.33 TCGA-GF-A6C9-06 X 36089966 36089966 C A CHDC2 Missense_Mutation p.T23N 0.47 tolerated(0.21) benign(0.005) TCGA-GF-A6C9-06 X 37028656 37028656 C T FAM47C Missense_Mutation p.H725Y 0.34 tolerated(0.08) benign(0.291) TCGA-GF-A6C9-06 X 37515009 37515009 A G LANCL3 Missense_Mutation p.I214M 0.38 tolerated(0.16) benign(0.001) TCGA-GF-A6C9-06 X 41202555 41202555 T C DDX3X Silent p.A210A 0.23 TCGA-GF-A6C9-06 X 47099222 47099222 G A USP11 Missense_Mutation p.V194M 0.33 deleterious(0) possibly_damaging(0.885) TCGA-GF-A6C9-06 X 47424652 47424652 T C ARAF Missense_Mutation p.F154L 0.18 tolerated(1) benign(0) TCGA-GF-A6C9-06 X 47509994 47509994 T C ELK1 5'Flank 0.44 TCGA-GF-A6C9-06 X 48325462 48325462 G A SLC38A5 Silent p.F44F 0.33 TCGA-GF-A6C9-06 X 48651592 48651592 G A GATA1 Missense_Mutation p.R253Q 0.52 deleterious(0) possibly_damaging(0.891) TCGA-GF-A6C9-06 X 48823245 48823245 G A KCND1 Missense_Mutation p.R431C 0.36 deleterious(0) probably_damaging(0.931) TCGA-GF-A6C9-06 X 49957724 49957724 G A AKAP4 Missense_Mutation p.S547F 0.29 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 50053071 50053071 C T CCNB3 Silent p.F634F 0.29 TCGA-GF-A6C9-06 X 50053605 50053605 G A CCNB3 Silent p.K812K 0.21 TCGA-GF-A6C9-06 X 50345692 50345692 C T SHROOM4 Missense_Mutation p.E1295K 0.29 deleterious(0.01) possibly_damaging(0.574) TCGA-GF-A6C9-06 X 50659177 50659177 C T BMP15 Missense_Mutation p.P250L 0.33 tolerated(0.15) benign(0.007) TCGA-GF-A6C9-06 X 5811151 5811151 C T NLGN4X Missense_Mutation p.D720N 0.27 tolerated_low_confidence(0.06) probably_damaging(0.98) TCGA-GF-A6C9-06 X 63406116 63406116 G A AMER1 3'UTR 0.21 TCGA-GF-A6C9-06 X 63411576 63411576 G A AMER1 Nonsense_Mutation p.R531* 0.32 TCGA-GF-A6C9-06 X 64708943 64708943 C T ZC3H12B Missense_Mutation p.R88C 0.23 tolerated(0.14) benign(0.004) TCGA-GF-A6C9-06 X 64744106 64744106 G A LAS1L Missense_Mutation p.P377L 0.20 tolerated(0.21) benign(0.004) TCGA-GF-A6C9-06 X 65412046 65412046 C T HEPH Nonsense_Mutation p.R434* 0.28 TCGA-GF-A6C9-06 X 65475998 65475998 C T HEPH Silent p.L962L 0.29 TCGA-GF-A6C9-06 X 65486411 65486411 C T HEPH Missense_Mutation p.A1179V 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-GF-A6C9-06 X 65819655 65819655 G A EDA2R Missense_Mutation p.L210F 0.39 tolerated(0.22) benign(0.089) TCGA-GF-A6C9-06 X 66788843 66788843 C T AR Intron 0.42 TCGA-GF-A6C9-06 X 66937343 66937343 G A AR Missense_Mutation p.D733N 0.15 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 66941750 66941750 C T AR Silent p.L798L 0.12 TCGA-GF-A6C9-06 X 69255487 69255487 C T EDA 3'UTR 0.18 TCGA-GF-A6C9-06 X 69283059 69283059 C T OTUD6A Silent p.L229L 0.20 TCGA-GF-A6C9-06 X 69478691 69478691 G A P2RY4 Missense_Mutation p.H262Y 0.18 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 69722126 69722126 C T DLG3 3'UTR 0.23 TCGA-GF-A6C9-06 X 69871315 69871315 C T TEX11 Missense_Mutation p.G505S 0.28 tolerated(0.24) benign(0.072) TCGA-GF-A6C9-06 X 70511718 70511718 C T NONO Missense_Mutation p.P82S 0.17 deleterious(0.05) benign(0.248) TCGA-GF-A6C9-06 X 71843061 71843061 C T PHKA1 Missense_Mutation p.D620N 0.17 tolerated(0.05) benign(0.348) TCGA-GF-A6C9-06 X 71872432 71872432 C T PHKA1 Missense_Mutation p.G403S 0.46 tolerated(0.08) possibly_damaging(0.756) TCGA-GF-A6C9-06 X 71887252 71887252 G A PHKA1 Silent p.V230V 0.14 TCGA-GF-A6C9-06 X 72667089 72667089 G A CDX4 5'Flank 0.12 TCGA-GF-A6C9-06 X 72673353 72673353 G A CDX4 Missense_Mutation p.G168E 0.17 deleterious(0.02) probably_damaging(0.961) TCGA-GF-A6C9-06 X 73045047 73045047 C T XIST RNA 0.31 TCGA-GF-A6C9-06 X 73047521 73047521 G A XIST RNA 0.27 TCGA-GF-A6C9-06 X 73062953 73062953 G A XIST RNA 0.21 TCGA-GF-A6C9-06 X 73064582 73064582 C T XIST RNA 0.22 TCGA-GF-A6C9-06 X 73064710 73064710 C T XIST RNA 0.12 TCGA-GF-A6C9-06 X 73071878 73071878 C T XIST RNA 0.24 TCGA-GF-A6C9-06 X 73740949 73740949 C T SLC16A2 Silent p.L185L 0.27 TCGA-GF-A6C9-06 X 73960341 73960341 G A KIAA2022 Missense_Mutation p.P1351S 0.36 tolerated(0.24) benign(0.036) TCGA-GF-A6C9-06 X 73962250 73962250 C T KIAA2022 Silent p.R714R 0.17 TCGA-GF-A6C9-06 X 75003605 75003605 G A MAGEE2 Nonsense_Mutation p.R428* 0.19 TCGA-GF-A6C9-06 X 75004125 75004125 G A MAGEE2 Silent p.G254G 0.15 TCGA-GF-A6C9-06 X 75649369 75649369 G A MAGEE1 Missense_Mutation p.G349D 0.24 deleterious_low_confidence(0.04) benign(0.011) TCGA-GF-A6C9-06 X 77528252 77528252 C T CYSLTR1 Missense_Mutation p.G331E 0.32 tolerated(0.71) benign(0) TCGA-GF-A6C9-06 X 77912720 77912720 G A ZCCHC5 Missense_Mutation p.P400S 0.10 deleterious(0.04) possibly_damaging(0.902) TCGA-GF-A6C9-06 X 78010330 78010330 A G LPAR4 5'UTR 0.20 TCGA-GF-A6C9-06 X 78010772 78010772 C T LPAR4 Missense_Mutation p.R136C 0.22 deleterious(0) probably_damaging(1) TCGA-GF-A6C9-06 X 78011429 78011429 G A LPAR4 Missense_Mutation p.D355N 0.21 tolerated_low_confidence(0.28) benign(0.012) TCGA-GF-A6C9-06 X 78619030 78619030 C T ITM2A Missense_Mutation p.E45K 0.17 tolerated(0.93) benign(0.001) TCGA-GF-A6C9-06 X 79698482 79698482 C T FAM46D Silent p.S148S 0.24 TCGA-GF-A6C9-06 X 83360865 83360865 C T RPS6KA6 Missense_Mutation p.R462Q 0.12 tolerated(0.06) possibly_damaging(0.748) TCGA-GF-A6C9-06 X 83361968 83361968 C T RPS6KA6 Missense_Mutation p.E398K 0.44 tolerated(0.15) benign(0.017) TCGA-GF-A6C9-06 X 83411176 83411176 G A RPS6KA6 Silent p.I55I 0.40 TCGA-GF-A6C9-06 X 84520255 84520255 G A ZNF711 Missense_Mutation p.D304N 0.18 tolerated(0.06) probably_damaging(0.988) TCGA-GF-A6C9-06 X 84525026 84525026 G A ZNF711 Missense_Mutation p.A328T 0.09 tolerated(0.39) benign(0) TCGA-GF-A6C9-06 X 84606391 84606391 T G POF1B Missense_Mutation p.T169P 0.23 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-GF-A6C9-06 X 86869513 86869513 G A KLHL4 Missense_Mutation p.V223I 0.16 tolerated(0.75) benign(0.008) TCGA-GF-A6C9-06 X 88008759 88008759 G A CPXCR1 Missense_Mutation p.G115E 0.31 tolerated(0.05) benign(0.004) TCGA-GF-A6C9-06 Y 14891492 14891492 C T USP9Y Silent p.F1021F 0.13 TCGA-GF-A6C9-06 Y 14891493 14891493 C T USP9Y Missense_Mutation p.L1022F 0.13 tolerated(0.55) benign(0.082) TCGA-GF-A6C9-06 Y 15417984 15417984 C A UTY Missense_Mutation p.R1020M 0.16 deleterious(0) possibly_damaging(0.832) TCGA-GF-A6C9-06 Y 25375761 25375761 C T DAZ2 Missense_Mutation p.P172L 0.20 tolerated_low_confidence(0.27) probably_damaging(0.988) TCGA-GF-A769-01 10 101935808 101935808 G T ERLIN1 Missense_Mutation p.N108K 0.86 deleterious(0.02) benign(0.291) TCGA-GF-A769-01 10 107016665 107016665 G A SORCS3 Silent p.L1142L 0.81 TCGA-GF-A769-01 10 55944920 55944920 C T PCDH15 Missense_Mutation p.E472K 0.85 deleterious(0) probably_damaging(1) TCGA-GF-A769-01 10 55944921 55944921 C T PCDH15 Silent p.R471R 0.85 TCGA-GF-A769-01 10 61832853 61832853 G A ANK3 Missense_Mutation p.R2596C 0.86 probably_damaging(0.985) TCGA-GF-A769-01 10 98985842 98985842 A T ARHGAP19 3'UTR 0.96 TCGA-GF-A769-01 11 123886708 123886708 C T OR10G4 Silent p.L143L 0.08 TCGA-GF-A769-01 11 123894146 123894146 C T OR10G9 Silent p.L143L 0.43 TCGA-GF-A769-01 11 124967550 124967550 G A TMEM218 Silent p.I100I 0.34 TCGA-GF-A769-01 11 1271331 1271331 C T MUC5B Silent p.P4407P 0.61 TCGA-GF-A769-01 11 4608253 4608253 G A OR52I2 Missense_Mutation p.G71R 0.11 deleterious(0) probably_damaging(0.997) TCGA-GF-A769-01 11 4615401 4615401 G A OR52I1 Missense_Mutation p.G45R 0.43 deleterious(0) probably_damaging(0.996) TCGA-GF-A769-01 11 5020354 5020354 C T OR51L1 Silent p.L48L 0.31 TCGA-GF-A769-01 11 5068032 5068032 G A OR52J3 Missense_Mutation p.E93K 0.45 tolerated(0.07) benign(0.081) TCGA-GF-A769-01 11 56237200 56237200 G A OR5M3 Silent p.L258L 0.49 TCGA-GF-A769-01 11 56949644 56949644 G A LRRC55 Missense_Mutation p.D93N 0.42 tolerated(0.11) probably_damaging(0.993) TCGA-GF-A769-01 11 64564750 64564750 G A MAP4K2 Missense_Mutation p.P425S 0.30 tolerated(0.29) benign(0) TCGA-GF-A769-01 11 64695303 64695303 G A PPP2R5B Silent p.P142P 0.40 TCGA-GF-A769-01 11 73074795 73074795 C T ARHGEF17 Silent p.V1750V 0.31 TCGA-GF-A769-01 11 7506887 7506887 G A OLFML1 5'UTR 0.33 TCGA-GF-A769-01 11 7506888 7506888 G A OLFML1 5'UTR 0.33 TCGA-GF-A769-01 11 78381065 78381065 G A TENM4 Missense_Mutation p.R2109C 0.39 deleterious(0) possibly_damaging(0.676) TCGA-GF-A769-01 11 89135611 89135611 G A NOX4 Silent p.F243F 0.46 TCGA-GF-A769-01 11 92533014 92533014 G A FAT3 Missense_Mutation p.D2279N 0.46 probably_damaging(1) TCGA-GF-A769-01 12 18443873 18443873 C G PIK3C2G Silent p.L282L 0.28 TCGA-GF-A769-01 12 2721233 2721233 G A CACNA1C Intron 1.00 TCGA-GF-A769-01 12 53215577 53215577 G A KRT79 3'UTR 0.56 TCGA-GF-A769-01 12 56572812 56572812 G A SMARCC2 Silent p.A370A 0.78 TCGA-GF-A769-01 12 91357824 91357824 C T EPYC 3'UTR 0.87 TCGA-GF-A769-01 12 95228418 95228418 G A MIR492 3'Flank 0.77 TCGA-GF-A769-01 13 114005241 114005241 C T GRTP1 Missense_Mutation p.D130N 0.41 tolerated(0.28) benign(0.013) TCGA-GF-A769-01 13 52598334 52598334 C T ALG11 Silent p.S156S 0.39 TCGA-GF-A769-01 14 106829652 106829652 A G IGHV4-34 Missense_Mutation p.F104S 0.53 deleterious(0) benign(0.301) TCGA-GF-A769-01 14 20296501 20296501 G A OR4N2 Missense_Mutation p.M298I 0.11 tolerated(0.16) benign(0.011) TCGA-GF-A769-01 14 22508879 22508879 C T TRAV20 5'UTR 0.32 TCGA-GF-A769-01 14 50907143 50907151 AAAAATAAT - MAP4K5 In_Frame_Del p.I525_F527del 0.21 TCGA-GF-A769-01 14 59112763 59112763 C T DACT1 Silent p.S474S 0.64 TCGA-GF-A769-01 14 63316527 63316527 G A KCNH5 Silent p.F471F 0.57 TCGA-GF-A769-01 14 73538381 73538381 C T RBM25 Missense_Mutation p.P11L 0.30 possibly_damaging(0.878) TCGA-GF-A769-01 14 74973894 74973894 C T LTBP2 Missense_Mutation p.G1299R 0.26 tolerated(0.15) benign(0.172) TCGA-GF-A769-01 14 76965171 76965171 C T ESRRB Intron 0.27 TCGA-GF-A769-01 14 78217799 78217799 G C SNW1 Missense_Mutation p.P65A 0.24 deleterious(0) probably_damaging(1) TCGA-GF-A769-01 14 92470126 92470126 T A TRIP11 Silent p.L1398L 0.56 TCGA-GF-A769-01 15 101434200 101434200 C T ALDH1A3 Silent p.P193P 0.56 TCGA-GF-A769-01 15 22855063 22855063 G T TUBGCP5 Missense_Mutation p.W508C 0.38 deleterious(0) probably_damaging(0.999) TCGA-GF-A769-01 15 41819264 41819264 G A RPAP1 Silent p.V583V 0.39 TCGA-GF-A769-01 15 51772841 51772841 G A DMXL2 Silent p.L2154L 0.42 TCGA-GF-A769-01 15 55722907 55722907 C T DYX1C1 Silent p.K408K 0.41 TCGA-GF-A769-01 15 55964674 55964674 G A PRTG Silent p.T670T 0.33 TCGA-GF-A769-01 15 58904163 58904163 T C ADAM10 Silent p.A513A 0.39 TCGA-GF-A769-01 15 75979787 75979787 G A CSPG4 Missense_Mutation p.P1207S 0.44 tolerated(0.85) benign(0.009) TCGA-GF-A769-01 15 76726424 76726424 A G SCAPER Silent p.L1102L 0.39 TCGA-GF-A769-01 15 81230306 81230306 G A KIAA1199 Nonsense_Mutation p.W1131* 0.38 TCGA-GF-A769-01 15 85382242 85382242 G A ALPK3 Silent p.K314K 0.35 TCGA-GF-A769-01 15 85679817 85679817 G A PDE8A Missense_Mutation p.R769K 0.24 deleterious(0) probably_damaging(0.992) TCGA-GF-A769-01 16 24231384 24231384 G A PRKCB 3'UTR 0.44 TCGA-GF-A769-01 16 30722126 30722126 C A SRCAP Missense_Mutation p.P396T 0.37 unknown(0) TCGA-GF-A769-01 16 30977066 30977066 C T SETD1A Missense_Mutation p.P622S 0.37 possibly_damaging(0.641) TCGA-GF-A769-01 16 67680875 67680875 C T RLTPR Missense_Mutation p.R204W 0.44 deleterious(0) probably_damaging(0.982) TCGA-GF-A769-01 16 69965095 69965095 C T WWP2 Missense_Mutation p.R496W 0.47 deleterious(0) probably_damaging(0.939) TCGA-GF-A769-01 16 70916634 70916634 G A HYDIN Missense_Mutation p.R3382C 0.42 probably_damaging(0.942) TCGA-GF-A769-01 17 13980197 13980197 C T COX10 Missense_Mutation p.S108F 0.57 tolerated(0.09) benign(0.27) TCGA-GF-A769-01 17 4074018 4074018 G A ANKFY1 Nonsense_Mutation p.R1135* 0.63 TCGA-GF-A769-01 17 51900682 51900682 C T KIF2B Silent p.S96S 0.68 TCGA-GF-A769-01 17 56247811 56247811 C T OR4D2 Silent p.F265F 0.72 TCGA-GF-A769-01 17 6904887 6904887 G A AC027763.2 Intron 0.55 TCGA-GF-A769-01 17 7219620 7219620 G A NEURL4 Missense_Mutation p.T1504M 0.63 tolerated(0.23) benign(0.064) TCGA-GF-A769-01 17 76219645 76219645 C T AC087645.1 Missense_Mutation p.G212D 0.66 tolerated_low_confidence(0.12) benign(0) TCGA-GF-A769-01 17 80195274 80195274 C T SLC16A3 Missense_Mutation p.P210S 0.20 tolerated(0.22) benign(0.006) TCGA-GF-A769-01 17 8926597 8926597 G C NTN1 Missense_Mutation p.V303L 0.33 tolerated(0.2) benign(0.02) TCGA-GF-A769-01 18 12014272 12014272 C T IMPA2 Silent p.F130F 0.46 TCGA-GF-A769-01 18 29339741 29339741 T G SLC25A52 Missense_Mutation p.K305T 0.45 deleterious(0.01) probably_damaging(0.945) TCGA-GF-A769-01 18 47777871 47777871 C T CCDC11 Missense_Mutation p.E253K 0.39 deleterious(0) probably_damaging(0.982) TCGA-GF-A769-01 19 15636311 15636311 G A CYP4F22 Missense_Mutation p.R55Q 0.36 tolerated(0.09) benign(0.003) TCGA-GF-A769-01 19 15839370 15839370 G A OR10H2 Missense_Mutation p.E173K 0.46 tolerated(0.82) benign(0.019) TCGA-GF-A769-01 19 16965046 16965046 C T SIN3B Silent p.L344L 0.51 TCGA-GF-A769-01 19 19337547 19337547 C T NCAN Missense_Mutation p.P442L 0.49 tolerated(0.12) benign(0.212) TCGA-GF-A769-01 19 22574760 22574760 C T ZNF98 Missense_Mutation p.R426K 0.64 tolerated(0.72) benign(0.021) TCGA-GF-A769-01 19 22846828 22846828 G A ZNF492 Silent p.V119V 0.53 TCGA-GF-A769-01 19 22940685 22940685 G A ZNF99 Missense_Mutation p.P676S 0.39 deleterious(0.05) benign(0.155) TCGA-GF-A769-01 19 22942219 22942219 C T ZNF99 Silent p.K164K 0.60 TCGA-GF-A769-01 19 23544915 23544915 G A ZNF91 Missense_Mutation p.T289I 0.45 deleterious(0.04) possibly_damaging(0.617) TCGA-GF-A769-01 19 31767984 31767984 G A TSHZ3 Silent p.I905I 0.33 TCGA-GF-A769-01 19 34818451 34818451 C T KIAA0355 Silent p.I277I 0.37 TCGA-GF-A769-01 19 3738956 3738956 G A TJP3 Silent p.E494E 0.45 TCGA-GF-A769-01 19 374007 374007 C A THEG Nonsense_Mutation p.G146* 0.28 TCGA-GF-A769-01 19 39078147 39078147 C T RYR1 3'Flank 0.31 TCGA-GF-A769-01 19 39322468 39322468 G A ECH1 5'UTR 0.30 TCGA-GF-A769-01 19 40541535 40541535 G A ZNF780B Missense_Mutation p.H411Y 0.41 deleterious(0) benign(0.13) TCGA-GF-A769-01 19 43373109 43373109 C T PSG1 Missense_Mutation p.E263K 0.36 tolerated(0.09) benign(0.187) TCGA-GF-A769-01 19 47285799 47285799 A T SLC1A5 Missense_Mutation p.V222E 0.45 tolerated(0.07) benign(0.005) TCGA-GF-A769-01 19 49920500 49920500 C T CCDC155 Silent p.L508L 0.50 TCGA-GF-A769-01 19 50100852 50100852 C T PRR12 Missense_Mutation p.P1087L 0.38 probably_damaging(0.964) TCGA-GF-A769-01 19 51274185 51274185 G A GPR32 Missense_Mutation p.G110R 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-GF-A769-01 19 51729317 51729317 C T CD33 Missense_Mutation p.T226I 0.37 deleterious(0) benign(0.193) TCGA-GF-A769-01 19 52003224 52003224 C T SIGLEC12 Missense_Mutation p.G253E 0.36 deleterious(0) probably_damaging(0.976) TCGA-GF-A769-01 19 55711789 55711789 G A PTPRH Missense_Mutation p.P412L 0.44 possibly_damaging(0.908) TCGA-GF-A769-01 19 56733512 56733512 G A ZSCAN5A Missense_Mutation p.S308F 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-GF-A769-01 19 9024984 9024984 C A MUC16 Missense_Mutation p.G12293V 0.38 possibly_damaging(0.565) TCGA-GF-A769-01 1 12853627 12853627 G A PRAMEF1 Missense_Mutation p.G84E 0.33 deleterious(0) probably_damaging(1) TCGA-GF-A769-01 1 145103916 145103916 G A SEC22B RNA 0.17 TCGA-GF-A769-01 1 151780064 151780064 C - RORC Frame_Shift_Del p.E481Kfs*115 0.38 TCGA-GF-A769-01 1 153084929 153084929 C T SPRR2F 3'UTR 0.40 TCGA-GF-A769-01 1 154548373 154548373 C T CHRNB2 Missense_Mutation p.L492F 0.44 tolerated_low_confidence(0.44) benign(0.218) TCGA-GF-A769-01 1 156823923 156823923 G A INSRR Silent p.F86F 0.47 TCGA-GF-A769-01 1 157497529 157497529 G A FCRL5 Missense_Mutation p.P613L 0.39 tolerated(0.22) benign(0.12) TCGA-GF-A769-01 1 160104995 160104995 C T ATP1A2 Silent p.L675L 0.37 TCGA-GF-A769-01 1 167962652 167962652 C T DCAF6 Missense_Mutation p.P293S 0.48 deleterious(0.05) probably_damaging(0.991) TCGA-GF-A769-01 1 167962653 167962653 C T DCAF6 Missense_Mutation p.P293L 0.49 deleterious(0.05) probably_damaging(0.994) TCGA-GF-A769-01 1 172501872 172501872 G A SUCO 5'Flank 0.47 TCGA-GF-A769-01 1 178427427 178427427 G T RASAL2 Missense_Mutation p.L1000F 0.30 tolerated(0.11) possibly_damaging(0.809) TCGA-GF-A769-01 1 179609153 179609153 G A TDRD5 Missense_Mutation p.G567E 0.37 tolerated(0.11) possibly_damaging(0.729) TCGA-GF-A769-01 1 205312652 205312652 C T KLHDC8A Silent p.L27L 0.37 TCGA-GF-A769-01 1 210977336 210977336 G A KCNH1 Silent p.S545S 0.25 TCGA-GF-A769-01 1 22199562 22199562 G A HSPG2 Silent p.P1272P 0.40 TCGA-GF-A769-01 1 24078489 24078489 C T TCEB3 Missense_Mutation p.P491L 0.41 tolerated(0.12) benign(0.017) TCGA-GF-A769-01 1 247063751 247063751 C A AHCTF1 Missense_Mutation p.V389F 0.31 deleterious(0) probably_damaging(0.992) TCGA-GF-A769-01 1 28818191 28818191 C T PHACTR4 Silent p.L646L 0.47 TCGA-GF-A769-01 1 29610484 29610484 G A PTPRU Silent p.R725R 0.42 TCGA-GF-A769-01 1 33999485 33999485 C T CSMD2 Missense_Mutation p.R3157H 0.42 tolerated(0.16) benign(0.021) TCGA-GF-A769-01 1 52283781 52283781 G A NRD1 Silent p.L508L 0.46 TCGA-GF-A769-01 1 75037960 75037960 C T C1orf173 Missense_Mutation p.G1145E 0.47 tolerated(0.17) benign(0.073) TCGA-GF-A769-01 1 970681 970681 C T AGRN Missense_Mutation p.P163L 0.30 deleterious(0.01) possibly_damaging(0.713) TCGA-GF-A769-01 20 16730648 16730648 C T OTOR Missense_Mutation p.P119L 0.36 tolerated(0.06) benign(0.007) TCGA-GF-A769-01 20 2413193 2413193 C T TGM6 Silent p.S675S 0.31 TCGA-GF-A769-01 20 31630618 31630618 C T BPIFB6 Intron 0.51 TCGA-GF-A769-01 20 34022494 34022494 C T GDF5 Missense_Mutation p.R240Q 0.58 deleterious(0) possibly_damaging(0.857) TCGA-GF-A769-01 20 35060676 35060676 G A DLGAP4 Missense_Mutation p.E186K 0.30 deleterious(0) benign(0.189) TCGA-GF-A769-01 20 35433156 35433156 G A SOGA1 Silent p.L1023L 0.58 TCGA-GF-A769-01 20 52570118 52570118 C T BCAS1 Silent p.K511K 0.46 TCGA-GF-A769-01 21 10862882 10862882 C T IGHV1OR21-1 Missense_Mutation p.H60Y 0.11 deleterious(0) benign(0.111) TCGA-GF-A769-01 21 46032136 46032136 C T KRTAP10-8 Missense_Mutation p.S40F 0.41 deleterious(0) probably_damaging(0.951) TCGA-GF-A769-01 21 47423714 47423714 C A COL6A1 Silent p.A958A 0.42 TCGA-GF-A769-01 22 23237922 23237922 C T IGLL5 3'UTR 0.71 TCGA-GF-A769-01 22 30035179 30035179 C T NF2 Missense_Mutation p.T114I 0.68 deleterious(0) probably_damaging(1) TCGA-GF-A769-01 22 31345759 31345759 T A MORC2 Missense_Mutation p.Q37L 0.34 deleterious(0) benign(0.232) TCGA-GF-A769-01 22 40055519 40055519 C T CACNA1I Silent p.F804F 0.50 TCGA-GF-A769-01 22 45809381 45809381 G A SMC1B Missense_Mutation p.P23L 0.65 deleterious(0) probably_damaging(1) TCGA-GF-A769-01 2 143913207 143913207 G A ARHGAP15 Missense_Mutation p.G50R 0.25 tolerated(0.18) benign(0.387) TCGA-GF-A769-01 2 143913208 143913208 G A ARHGAP15 Missense_Mutation p.G50E 0.25 tolerated(0.33) benign(0.007) TCGA-GF-A769-01 2 166903469 166903469 C T SCN1A Silent p.G396G 0.23 TCGA-GF-A769-01 2 169938347 169938347 G A DHRS9 Missense_Mutation p.D86N 0.60 tolerated(0.32) benign(0.026) TCGA-GF-A769-01 2 179419272 179419272 C T TTN Missense_Mutation p.G29601E 0.64 TCGA-GF-A769-01 2 179481253 179481253 C T TTN Missense_Mutation p.G16089R 0.23 TCGA-GF-A769-01 2 179594488 179594488 C T TTN Silent p.Q6164Q 0.59 TCGA-GF-A769-01 2 179611143 179611143 C T TTN Intron 0.37 TCGA-GF-A769-01 2 185802800 185802800 G A ZNF804A Missense_Mutation p.G893S 0.56 tolerated(0.36) benign(0.151) TCGA-GF-A769-01 2 201324489 201324489 C T SPATS2L Intron 0.60 TCGA-GF-A769-01 2 206364631 206364631 C T PARD3B Missense_Mutation p.T957M 0.30 tolerated(0.25) benign(0.005) TCGA-GF-A769-01 2 85554321 85554321 G A TGOLN2 Silent p.V178V 0.58 TCGA-GF-A769-01 2 96040896 96040896 C T KCNIP3 Silent p.T129T 0.29 TCGA-GF-A769-01 3 136664754 136664754 C T NCK1 Silent p.L186L 0.84 TCGA-GF-A769-01 3 183888427 183888427 C T DVL3 Missense_Mutation p.P679S 0.77 deleterious(0.03) possibly_damaging(0.876) TCGA-GF-A769-01 3 62278836 62278836 G A PTPRG Missense_Mutation p.E1398K 0.26 deleterious(0) possibly_damaging(0.803) TCGA-GF-A769-01 3 9101918 9101918 G A SRGAP3 Silent p.I266I 0.85 TCGA-GF-A769-01 4 119035960 119035960 G A NDST3 Splice_Site p.X357_splice 0.36 TCGA-GF-A769-01 4 138451538 138451538 C T PCDH18 Missense_Mutation p.E569K 0.43 tolerated(0.2) probably_damaging(0.999) TCGA-GF-A769-01 4 184931459 184931459 A C STOX2 Silent p.R490R 0.44 TCGA-GF-A769-01 4 187004088 187004088 G A TLR3 Silent p.K416K 0.40 TCGA-GF-A769-01 4 54232180 54232180 G A SCFD2 5'UTR 0.53 TCGA-GF-A769-01 4 7006646 7006646 A G TBC1D14 Missense_Mutation p.N449S 0.75 tolerated(0.73) benign(0.002) TCGA-GF-A769-01 4 70721092 70721092 C T SULT1E1 Silent p.V66V 0.41 TCGA-GF-A769-01 5 121409712 121409712 G T LOX Missense_Mutation p.T344K 0.39 deleterious(0) possibly_damaging(0.901) TCGA-GF-A769-01 5 134782587 134782587 C T C5orf20 Missense_Mutation p.G71E 0.29 tolerated_low_confidence(0.14) probably_damaging(0.969) TCGA-GF-A769-01 5 135692793 135692793 C T TRPC7 Missense_Mutation p.E95K 0.34 tolerated(0.14) possibly_damaging(0.67) TCGA-GF-A769-01 5 136315117 136315117 C T SPOCK1 Missense_Mutation p.A345T 0.35 tolerated(0.28) possibly_damaging(0.671) TCGA-GF-A769-01 5 140553887 140553887 C T PCDHB7 Silent p.L491L 0.38 TCGA-GF-A769-01 5 140732008 140732008 C T PCDHGB1 Silent p.L727L 0.39 TCGA-GF-A769-01 5 143541788 143541788 G A YIPF5 Missense_Mutation p.S202F 0.41 deleterious(0) probably_damaging(0.942) TCGA-GF-A769-01 5 145393588 145393588 G A SH3RF2 Missense_Mutation p.M341I 0.42 tolerated(0.39) benign(0.01) TCGA-GF-A769-01 5 159344455 159344455 C T ADRA1B Silent p.L181L 0.46 TCGA-GF-A769-01 5 179252214 179252214 C T SQSTM1 Missense_Mutation p.L248F 0.41 deleterious(0.05) possibly_damaging(0.634) TCGA-GF-A769-01 5 180048620 180048620 C T FLT4 Missense_Mutation p.E648K 0.52 deleterious(0.03) probably_damaging(0.954) TCGA-GF-A769-01 5 35774065 35774065 G A SPEF2 Silent p.R1340R 0.40 TCGA-GF-A769-01 5 38406299 38406299 G A EGFLAM Missense_Mutation p.E262K 0.36 tolerated_low_confidence(0.23) benign(0.007) TCGA-GF-A769-01 6 132021929 132021929 C A OR2A4 Missense_Mutation p.G205W 0.30 deleterious(0) possibly_damaging(0.825) TCGA-GF-A769-01 6 149395162 149395162 C T UST Silent p.F377F 0.84 TCGA-GF-A769-01 6 152660443 152660443 G A SYNE1 Missense_Mutation p.S4095F 0.80 possibly_damaging(0.748) TCGA-GF-A769-01 6 29141402 29141402 G A OR2J2 5'UTR 0.42 TCGA-GF-A769-01 6 31323290 31323290 G T HLA-B Nonsense_Mutation p.Y233* 0.40 TCGA-GF-A769-01 6 31324906 31324906 G A HLA-B Silent p.L10L 0.52 TCGA-GF-A769-01 6 52843117 52843117 G A GSTA4 3'UTR 0.54 TCGA-GF-A769-01 6 70944628 70944628 C T COL9A1 Missense_Mutation p.E710K 0.33 possibly_damaging(0.848) TCGA-GF-A769-01 7 103155821 103155821 T C RELN Missense_Mutation p.R2644G 0.28 tolerated(0.35) benign(0.023) TCGA-GF-A769-01 7 103230239 103230239 C T RELN Missense_Mutation p.A1317T 0.17 tolerated(0.97) benign(0.426) TCGA-GF-A769-01 7 104730540 104730540 C T KMT2E Silent p.I481I 0.32 TCGA-GF-A769-01 7 113518217 113518217 G A PPP1R3A Missense_Mutation p.S977F 0.27 tolerated(0.73) benign(0.004) TCGA-GF-A769-01 7 123092714 123092714 C T IQUB 3'UTR 0.63 TCGA-GF-A769-01 7 126249485 126249485 C T GRM8 Silent p.Q475Q 0.87 TCGA-GF-A769-01 7 138313002 138313002 C T SVOPL Missense_Mutation p.G324R 0.61 tolerated(0.53) benign(0.001) TCGA-GF-A769-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-GF-A769-01 7 146829338 146829338 G A CNTNAP2 Missense_Mutation p.G362E 0.57 deleterious(0) possibly_damaging(0.466) TCGA-GF-A769-01 7 149427422 149427422 C T KRBA1 Missense_Mutation p.L665F 0.33 tolerated(0.63) possibly_damaging(0.682) TCGA-GF-A769-01 7 150649873 150649873 G A KCNH2 Silent p.T399T 0.56 TCGA-GF-A769-01 7 158826964 158826964 C T VIPR2 Missense_Mutation p.R304Q 0.54 deleterious(0.04) probably_damaging(1) TCGA-GF-A769-01 7 57529147 57529147 A G ZNF716 Missense_Mutation p.E327G 0.48 deleterious(0.01) possibly_damaging(0.856) TCGA-GF-A769-01 7 82579795 82579795 C T PCLO Missense_Mutation p.S3370N 0.25 unknown(0) TCGA-GF-A769-01 8 118184921 118184921 C A SLC30A8 3'UTR 0.41 TCGA-GF-A769-01 8 141461232 141461232 T A TRAPPC9 Missense_Mutation p.I179F 0.20 deleterious(0) benign(0.042) TCGA-GF-A769-01 8 141461233 141461233 G A TRAPPC9 Silent p.L178L 0.21 TCGA-GF-A769-01 8 144461589 144461589 G A RHPN1 Missense_Mutation p.E286K 0.15 deleterious(0) probably_damaging(0.999) TCGA-GF-A769-01 8 144992172 144992172 G A PLEC Silent p.F4076F 0.18 TCGA-GF-A769-01 8 1497486 1497486 C T DLGAP2 Silent p.P209P 0.78 TCGA-GF-A769-01 8 27516954 27516954 C T SCARA3 Missense_Mutation p.R423W 0.78 deleterious(0) probably_damaging(0.999) TCGA-GF-A769-01 8 37794544 37794544 C T GOT1L1 Missense_Mutation p.G184E 0.17 tolerated(0.22) probably_damaging(0.993) TCGA-GF-A769-01 8 55539569 55539569 G A RP1 Missense_Mutation p.E1043K 0.44 tolerated(0.11) possibly_damaging(0.499) TCGA-GF-A769-01 8 77763832 77763832 C G ZFHX4 Missense_Mutation p.H1559D 0.46 benign(0.402) TCGA-GF-A769-01 8 77766957 77766957 A C ZFHX4 Missense_Mutation p.E2600D 0.39 possibly_damaging(0.848) TCGA-GF-A769-01 9 21239226 21239226 T A IFNA14 3'UTR 0.80 TCGA-GF-A769-01 9 78911664 78911664 G A PCSK5 Missense_Mutation p.E1136K 0.84 tolerated(0.92) benign(0.001) TCGA-GF-A769-01 9 95947821 95947821 G A WNK2 Missense_Mutation p.G204S 0.82 unknown(0) TCGA-GF-A769-01 X 129498770 129498770 G T SLC25A14 Intron 0.97 TCGA-GF-A769-01 X 135428482 135428482 G A GPR112 Missense_Mutation p.E873K 0.81 deleterious(0.03) possibly_damaging(0.734) TCGA-GF-A769-01 X 140785745 140785745 C T SPANXD Silent p.R57R 0.39 TCGA-GF-A769-01 X 151131076 151131076 C T GABRE Missense_Mutation p.D128N 0.88 deleterious(0) probably_damaging(0.994) TCGA-GF-A769-01 X 152160201 152160201 G A PNMA5 5'UTR 0.80 TCGA-GF-A769-01 X 47269689 47269689 C T ZNF157 Silent p.F29F 0.87 TCGA-GN-A262-06 10 107006990 107006990 C T SORCS3 Silent p.S1002S 0.89 TCGA-GN-A262-06 10 15639265 15639265 C T ITGA8 Missense_Mutation p.E718K 0.55 deleterious(0.04) possibly_damaging(0.555) TCGA-GN-A262-06 10 25464451 25464451 C T GPR158 Silent p.S34S 0.56 TCGA-GN-A262-06 10 34399939 34399939 G A PARD3 3'UTR 0.64 TCGA-GN-A262-06 10 55955511 55955511 T G PCDH15 Missense_Mutation p.T413P 0.97 deleterious(0.01) probably_damaging(1) TCGA-GN-A262-06 10 62039364 62039364 G A ANK3 Nonsense_Mutation p.R50* 1.00 TCGA-GN-A262-06 10 81373630 81373630 G A SFTPA1 Missense_Mutation p.E185K 0.74 deleterious(0.01) probably_damaging(1) TCGA-GN-A262-06 10 87373170 87373170 G A GRID1 Silent p.P865P 1.00 TCGA-GN-A262-06 10 87373171 87373171 G A GRID1 Missense_Mutation p.P865L 1.00 deleterious(0) possibly_damaging(0.577) TCGA-GN-A262-06 10 96805651 96805651 C T CYP2C8 Missense_Mutation p.D293N 0.96 tolerated(0.23) possibly_damaging(0.475) TCGA-GN-A262-06 11 130332555 130332555 C T ADAMTS15 Silent p.A474A 0.42 TCGA-GN-A262-06 11 133795732 133795732 G C IGSF9B Missense_Mutation p.R646G 0.36 tolerated(0.58) possibly_damaging(0.699) TCGA-GN-A262-06 11 18765556 18765556 G A PTPN5 Silent p.F96F 0.97 TCGA-GN-A262-06 11 3845364 3845364 C T PGAP2 Silent p.F200F 1.00 TCGA-GN-A262-06 11 40136898 40136898 C T LRRC4C Nonsense_Mutation p.W315* 0.93 TCGA-GN-A262-06 11 45245971 45245971 G A PRDM11 Missense_Mutation p.A316T 0.96 tolerated_low_confidence(0.22) benign(0.05) TCGA-GN-A262-06 11 51412124 51412124 G A OR4A5 Missense_Mutation p.S91F 0.41 deleterious_low_confidence(0.02) benign(0.295) TCGA-GN-A262-06 11 5411355 5411355 C A OR51M1 Missense_Mutation p.Q243K 0.95 tolerated(0.68) benign(0) TCGA-GN-A262-06 11 55339945 55339945 C T OR4C16 Silent p.I114I 0.49 TCGA-GN-A262-06 11 55563092 55563092 G A OR5D14 Missense_Mutation p.D21N 0.50 deleterious(0.01) possibly_damaging(0.548) TCGA-GN-A262-06 11 55587727 55587727 G A OR5D18 Missense_Mutation p.E208K 0.42 deleterious(0.01) benign(0.053) TCGA-GN-A262-06 11 57003458 57003458 C T APLNR Missense_Mutation p.E341K 0.38 tolerated(0.09) benign(0.03) TCGA-GN-A262-06 11 57799260 57799260 C T OR6Q1 Missense_Mutation p.S279F 0.47 deleterious(0) probably_damaging(0.998) TCGA-GN-A262-06 11 61643392 61643392 G A FADS3 Missense_Mutation p.S406L 0.47 deleterious(0) benign(0.183) TCGA-GN-A262-06 11 62415914 62415914 G A INTS5 Silent p.L546L 0.44 TCGA-GN-A262-06 11 62474739 62474739 C T BSCL2 5'UTR 0.48 TCGA-GN-A262-06 11 64120877 64120877 G A CCDC88B Missense_Mutation p.E1248K 0.37 deleterious(0) benign(0.018) TCGA-GN-A262-06 11 65427250 65427250 C T RELA Missense_Mutation p.R149H 0.46 tolerated(0.24) possibly_damaging(0.817) TCGA-GN-A262-06 11 6635653 6635653 G A TPP1 3'UTR 1.00 TCGA-GN-A262-06 11 85347299 85347299 T A TMEM126B 3'UTR 0.62 TCGA-GN-A262-06 11 86123499 86123499 G A CCDC81 Missense_Mutation p.R430Q 0.45 tolerated(1) benign(0.001) TCGA-GN-A262-06 11 86123500 86123500 G A CCDC81 Silent p.R430R 0.44 TCGA-GN-A262-06 11 8732710 8732710 G A ST5 Silent p.F747F 0.97 TCGA-GN-A262-06 11 92087074 92087074 C A FAT3 Missense_Mutation p.A599E 0.43 possibly_damaging(0.722) TCGA-GN-A262-06 11 94039810 94039810 C T FOLR4 Silent p.F90F 0.49 TCGA-GN-A262-06 12 10462030 10462030 G A KLRD1 Silent p.G17G 0.37 TCGA-GN-A262-06 12 113745603 113745603 G A SLC8B1 Missense_Mutation p.A435V 0.43 tolerated(0.09) possibly_damaging(0.658) TCGA-GN-A262-06 12 117724040 117724040 C T NOS1 Missense_Mutation p.E387K 0.46 tolerated(0.11) benign(0.012) TCGA-GN-A262-06 12 118582479 118582479 C T PEBP1 Silent p.H145H 0.54 TCGA-GN-A262-06 12 119943060 119943060 G A CCDC60 Missense_Mutation p.D279N 0.44 deleterious(0.01) probably_damaging(1) TCGA-GN-A262-06 12 120436384 120436384 G A CCDC64 Nonsense_Mutation p.W163* 0.42 TCGA-GN-A262-06 12 122618089 122618089 C T MLXIP Silent p.L429L 0.40 TCGA-GN-A262-06 12 124820132 124820132 G A NCOR2 Silent p.S2054S 0.10 TCGA-GN-A262-06 12 130927162 130927162 G A RIMBP2 Silent p.F228F 0.53 TCGA-GN-A262-06 12 132466717 132466717 G C EP400 Silent p.G541G 0.50 TCGA-GN-A262-06 12 18716366 18716366 C T PIK3C2G Missense_Mutation p.S1238L 0.58 deleterious(0) probably_damaging(0.995) TCGA-GN-A262-06 12 18854511 18854511 G A PLCZ1 Intron 0.52 TCGA-GN-A262-06 12 18890334 18890334 C T PLCZ1 5'UTR 0.54 TCGA-GN-A262-06 12 28460621 28460621 G A CCDC91 Missense_Mutation p.G172D 0.23 tolerated(1) benign(0.003) TCGA-GN-A262-06 12 48866516 48866516 C T ANP32D Silent p.F23F 0.37 TCGA-GN-A262-06 12 49918674 49918674 C T SPATS2 Missense_Mutation p.R441W 0.58 deleterious(0) possibly_damaging(0.874) TCGA-GN-A262-06 12 50043558 50043558 G T FMNL3 Missense_Mutation p.F717L 0.52 tolerated(0.3) probably_damaging(0.981) TCGA-GN-A262-06 12 5154211 5154211 G A KCNA5 Missense_Mutation p.G300S 0.41 tolerated(0.15) benign(0.003) TCGA-GN-A262-06 12 51586157 51586157 G A POU6F1 Missense_Mutation p.P116L 0.49 deleterious(0.02) benign(0.01) TCGA-GN-A262-06 12 52862842 52862842 C A KRT6C 3'UTR 0.44 TCGA-GN-A262-06 12 53207706 53207706 C T KRT4 Missense_Mutation p.G46E 0.52 deleterious(0) probably_damaging(0.97) TCGA-GN-A262-06 12 53227586 53227586 G A KRT79 Silent p.F153F 0.51 TCGA-GN-A262-06 12 54422381 54422381 C T HOXC6 Missense_Mutation p.L26F 0.43 deleterious(0.01) benign(0.013) TCGA-GN-A262-06 12 56230895 56230895 C T MMP19 Silent p.G484G 0.46 TCGA-GN-A262-06 12 56230896 56230896 C T MMP19 Missense_Mutation p.G484E 0.46 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A262-06 12 56552250 56552250 G A MYL6 Intron 0.55 TCGA-GN-A262-06 12 57493118 57493118 G A STAT6 Missense_Mutation p.P617L 0.52 deleterious(0) probably_damaging(0.981) TCGA-GN-A262-06 12 58121490 58121490 G A AGAP2 Missense_Mutation p.S944L 0.50 deleterious(0.01) benign(0.436) TCGA-GN-A262-06 12 64202671 64202676 GTCCAT - TMEM5 In_Frame_Del p.S378_M379del 0.46 TCGA-GN-A262-06 12 72090353 72090353 G A TMEM19 Missense_Mutation p.G128S 0.39 tolerated(0.08) benign(0.121) TCGA-GN-A262-06 12 8211871 8211871 G A C3AR1 Missense_Mutation p.S304F 0.53 tolerated(0.71) benign(0.025) TCGA-GN-A262-06 12 94634386 94634386 C T PLXNC1 Missense_Mutation p.S749F 0.46 tolerated(0.2) possibly_damaging(0.493) TCGA-GN-A262-06 12 94634387 94634387 C T PLXNC1 Silent p.S749S 0.45 TCGA-GN-A262-06 13 113801733 113801733 G A F10 Missense_Mutation p.G263E 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 13 21217681 21217681 T A IFT88 Silent p.S599S 0.53 TCGA-GN-A262-06 13 23908832 23908832 G A SACS Silent p.L3061L 0.39 TCGA-GN-A262-06 13 32367085 32367085 G A RXFP2 Missense_Mutation p.G549E 0.55 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 13 37011825 37011825 G A CCNA1 Silent p.K119K 0.48 TCGA-GN-A262-06 13 37559848 37559848 G A ALG5 Silent p.I159I 0.53 TCGA-GN-A262-06 13 39587366 39587366 G A PROSER1 Missense_Mutation p.P675S 0.46 tolerated_low_confidence(0.3) benign(0.09) TCGA-GN-A262-06 13 46067544 46067544 T G COG3 Missense_Mutation p.V417G 0.44 deleterious(0) possibly_damaging(0.828) TCGA-GN-A262-06 13 46067545 46067545 T G COG3 Silent p.V417V 0.45 TCGA-GN-A262-06 13 52515323 52515323 G A ATP7B Silent p.N1150N 0.46 TCGA-GN-A262-06 13 66878990 66878990 C T PCDH9 Missense_Mutation p.D1171N 0.48 tolerated(0.28) benign(0.173) TCGA-GN-A262-06 13 75863074 75863074 A T TBC1D4 Nonsense_Mutation p.L1220* 0.53 TCGA-GN-A262-06 13 75863075 75863075 A T TBC1D4 Missense_Mutation p.L1220I 0.53 deleterious(0.04) probably_damaging(0.997) TCGA-GN-A262-06 13 76100608 76100608 G A COMMD6 3'UTR 0.49 TCGA-GN-A262-06 13 84454754 84454754 C T SLITRK1 Missense_Mutation p.D297N 1.00 tolerated(0.48) benign(0.005) TCGA-GN-A262-06 13 95095723 95095723 G T DCT Missense_Mutation p.Q483K 0.20 tolerated(0.09) benign(0.15) TCGA-GN-A262-06 13 96543157 96543157 G A UGGT2 Missense_Mutation p.P973S 0.52 deleterious(0.01) possibly_damaging(0.624) TCGA-GN-A262-06 13 99368162 99368162 G A SLC15A1 Silent p.N231N 0.38 TCGA-GN-A262-06 14 104570991 104570991 C T ASPG Silent p.F323F 0.45 TCGA-GN-A262-06 14 106926285 106926285 C T IGHV3-43 Missense_Mutation p.R86Q 0.45 deleterious_low_confidence(0.01) benign(0.17) TCGA-GN-A262-06 14 20295862 20295862 C T OR4N2 Silent p.F85F 0.32 TCGA-GN-A262-06 14 20296145 20296145 G A OR4N2 Missense_Mutation p.D180N 0.23 deleterious(0.01) probably_damaging(1) TCGA-GN-A262-06 14 20612573 20612573 G A OR4N5 Missense_Mutation p.E227K 0.55 tolerated(0.53) benign(0.001) TCGA-GN-A262-06 14 21458158 21458158 A G METTL17 5'UTR 0.43 TCGA-GN-A262-06 14 23299432 23299432 C T MRPL52 Silent p.P42P 0.42 TCGA-GN-A262-06 14 25100298 25100298 C T GZMB Silent p.K241K 0.52 TCGA-GN-A262-06 14 38724746 38724746 C T CLEC14A Missense_Mutation p.R161Q 0.55 tolerated(0.26) benign(0.439) TCGA-GN-A262-06 14 45645631 45645631 G A FANCM Missense_Mutation p.R1225K 0.41 tolerated(1) benign(0) TCGA-GN-A262-06 14 57741132 57741132 C T AP5M1 Missense_Mutation p.S82F 0.45 deleterious(0.04) benign(0.429) TCGA-GN-A262-06 14 62162479 62162479 C T HIF1A 5'Flank 0.50 TCGA-GN-A262-06 14 64727386 64727386 C T ESR2 Missense_Mutation p.A245T 0.47 tolerated(0.28) benign(0.003) TCGA-GN-A262-06 14 65230538 65230538 G A SPTB Intron 0.38 TCGA-GN-A262-06 14 67589024 67589024 C T GPHN Missense_Mutation p.R560C 0.48 deleterious(0) probably_damaging(0.986) TCGA-GN-A262-06 14 70713822 70713822 C T ADAM21P1 RNA 0.57 TCGA-GN-A262-06 14 75018965 75018965 C T LTBP2 Missense_Mutation p.G442R 0.57 tolerated(0.23) possibly_damaging(0.823) TCGA-GN-A262-06 15 101983852 101983852 T C PCSK6 Missense_Mutation p.E103G 0.46 deleterious(0.01) benign(0.287) TCGA-GN-A262-06 15 20644192 20644192 C T HERC2P3 RNA 0.13 TCGA-GN-A262-06 15 40675139 40675139 C T KNSTRN Silent p.L35L 0.40 TCGA-GN-A262-06 15 42115750 42115750 C T MAPKBP1 Missense_Mutation p.P1241L 0.58 tolerated(0.5) benign(0.001) TCGA-GN-A262-06 15 42149846 42149846 C T SPTBN5 Silent p.E2763E 0.55 TCGA-GN-A262-06 15 42565637 42565637 C T GANC 5'Flank 0.37 TCGA-GN-A262-06 15 43819247 43819247 C A MAP1A Missense_Mutation p.P1859Q 0.68 probably_damaging(0.999) TCGA-GN-A262-06 15 63089500 63089500 C A TLN2 Missense_Mutation p.L2045M 0.41 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 15 63131062 63131062 G A TLN2 Missense_Mutation p.G2461E 0.45 deleterious(0) probably_damaging(0.998) TCGA-GN-A262-06 15 63932498 63932498 G A HERC1 Silent p.S3918S 0.49 TCGA-GN-A262-06 15 72104815 72104815 C T NR2E3 RNA 0.42 TCGA-GN-A262-06 15 78757601 78757601 C T IREB2 Missense_Mutation p.P94L 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 15 79059069 79059069 C T ADAMTS7 Missense_Mutation p.D1062N 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 15 79064071 79064071 C G ADAMTS7 Silent p.P744P 0.69 TCGA-GN-A262-06 15 81572043 81572043 G A IL16 Missense_Mutation p.E337K 0.50 tolerated(0.2) benign(0.159) TCGA-GN-A262-06 15 83224663 83224663 G A CPEB1 Silent p.P272P 0.48 TCGA-GN-A262-06 16 1392257 1392257 C T BAIAP3 Silent p.F345F 0.61 TCGA-GN-A262-06 16 15677012 15677012 G A C16orf45 Splice_Site p.X140_splice 0.18 TCGA-GN-A262-06 16 15677013 15677013 G A C16orf45 Silent p.R140R 0.18 TCGA-GN-A262-06 16 29909234 29909234 G A SEZ6L2 Silent p.L51L 0.31 TCGA-GN-A262-06 16 30096328 30096328 C T PPP4C Missense_Mutation p.P290L 0.28 deleterious(0.02) benign(0.008) TCGA-GN-A262-06 16 30409370 30409370 G A ZNF48 Missense_Mutation p.G267R 0.65 tolerated(0.98) benign(0.008) TCGA-GN-A262-06 16 30536914 30536914 T A ZNF768 Nonsense_Mutation p.K183* 0.68 TCGA-GN-A262-06 16 3065551 3065551 G C CLDN6 Missense_Mutation p.R158G 0.31 deleterious(0) possibly_damaging(0.699) TCGA-GN-A262-06 16 31473666 31473666 C T ARMC5 Silent p.S266S 0.42 TCGA-GN-A262-06 16 53358296 53358296 G A CHD9 Missense_Mutation p.G2712E 0.21 unknown(0) TCGA-GN-A262-06 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.83 probably_damaging(0.953) TCGA-GN-A262-06 16 75146529 75146529 C T LDHD Silent p.R443R 0.79 TCGA-GN-A262-06 17 10204920 10204920 T C MYH13 Missense_Mutation p.K1923R 0.43 deleterious(0.02) benign(0.005) TCGA-GN-A262-06 17 21319870 21319870 C T KCNJ12 Missense_Mutation p.P406S 0.15 tolerated(0.19) benign(0.003) TCGA-GN-A262-06 17 2203327 2203327 G A SMG6 Silent p.S240S 0.51 TCGA-GN-A262-06 17 2203328 2203328 G A SMG6 Missense_Mutation p.S240F 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-GN-A262-06 17 25628924 25628924 T G WSB1 Missense_Mutation p.W51G 0.49 deleterious(0) probably_damaging(0.986) TCGA-GN-A262-06 17 34397893 34397893 C T CCL18 Missense_Mutation p.P52S 0.55 tolerated(1) benign(0.005) TCGA-GN-A262-06 17 3788759 3788759 G A CAMKK1 Silent p.L75L 0.50 TCGA-GN-A262-06 17 40620064 40620064 C T ATP6V0A1 Missense_Mutation p.P78L 0.88 deleterious(0.04) benign(0.013) TCGA-GN-A262-06 17 47688703 47688703 G A SPOP Silent p.F199F 0.98 TCGA-GN-A262-06 17 47688704 47688704 A T SPOP Missense_Mutation p.F199Y 0.98 deleterious(0) possibly_damaging(0.774) TCGA-GN-A262-06 17 4937210 4937210 G A SLC52A1 Missense_Mutation p.P192S 0.52 tolerated(1) benign(0.021) TCGA-GN-A262-06 17 51901110 51901110 C T KIF2B Missense_Mutation p.P239L 0.89 deleterious(0.03) benign(0.083) TCGA-GN-A262-06 17 5486158 5486158 G A NLRP1 Missense_Mutation p.P94S 0.28 tolerated(0.48) benign(0.001) TCGA-GN-A262-06 17 641230 641230 C T FAM57A Silent p.N117N 0.44 TCGA-GN-A262-06 17 6554934 6554934 C T MED31 5'UTR 0.40 TCGA-GN-A262-06 17 7329509 7329509 G A C17orf74 Missense_Mutation p.E67K 0.53 tolerated(0.13) possibly_damaging(0.801) TCGA-GN-A262-06 17 74003575 74003575 G A EVPL Missense_Mutation p.T1904I 0.55 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 17 7660411 7660411 C T DNAH2 Missense_Mutation p.S636F 0.53 benign(0.005) TCGA-GN-A262-06 17 7671298 7671298 C T DNAH2 Silent p.F1252F 0.42 TCGA-GN-A262-06 17 8049754 8049754 G A PER1 Silent p.T658T 0.53 TCGA-GN-A262-06 17 9515788 9515788 C T WDR16 Silent p.V339V 0.34 TCGA-GN-A262-06 18 48255650 48255650 C G MAPK4 Missense_Mutation p.P397R 0.39 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-GN-A262-06 18 72234659 72234659 C T CNDP1 Silent p.F249F 0.54 TCGA-GN-A262-06 18 76753670 76753670 C T SALL3 Missense_Mutation p.S560F 0.43 deleterious(0) possibly_damaging(0.753) TCGA-GN-A262-06 19 13226814 13226814 G A TRMT1 Nonsense_Mutation p.Q103* 0.44 TCGA-GN-A262-06 19 15072729 15072729 C T SLC1A6 Intron 0.67 TCGA-GN-A262-06 19 17100518 17100518 G A CPAMD8 Missense_Mutation p.L491F 0.54 deleterious(0.01) possibly_damaging(0.908) TCGA-GN-A262-06 19 17442127 17442127 G A ANO8 Missense_Mutation p.A227V 0.55 deleterious(0.01) probably_damaging(0.946) TCGA-GN-A262-06 19 18084949 18084949 G A KCNN1 Silent p.G84G 0.51 TCGA-GN-A262-06 19 18886507 18886507 G T CRTC1 Silent p.P539P 0.50 TCGA-GN-A262-06 19 18898354 18898354 C T COMP Missense_Mutation p.D361N 0.36 deleterious(0.02) possibly_damaging(0.608) TCGA-GN-A262-06 19 19329755 19329755 G A NCAN Silent p.R35R 0.36 TCGA-GN-A262-06 19 22942286 22942286 C T ZNF99 Missense_Mutation p.G142E 0.40 tolerated(0.84) benign(0.002) TCGA-GN-A262-06 19 30313020 30313020 T C CCNE1 Missense_Mutation p.F275L 0.44 deleterious(0) possibly_damaging(0.902) TCGA-GN-A262-06 19 3205998 3205998 C T NCLN Nonsense_Mutation p.R424* 0.44 TCGA-GN-A262-06 19 3527805 3527805 C T FZR1 Missense_Mutation p.T216I 0.50 deleterious(0) possibly_damaging(0.707) TCGA-GN-A262-06 19 3527806 3527806 C T FZR1 Silent p.T216T 0.50 TCGA-GN-A262-06 19 35450180 35450180 G A ZNF792 Silent p.G193G 0.49 TCGA-GN-A262-06 19 35793567 35793567 A G MAG Missense_Mutation p.N396S 0.54 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A262-06 19 36304113 36304113 G A PRODH2 Missense_Mutation p.T24I 0.46 benign(0) TCGA-GN-A262-06 19 36349734 36349734 G A KIRREL2 Missense_Mutation p.G164R 0.44 deleterious(0.01) probably_damaging(0.951) TCGA-GN-A262-06 19 38858385 38858385 G A CATSPERG Missense_Mutation p.E967K 0.51 tolerated(0.05) possibly_damaging(0.502) TCGA-GN-A262-06 19 39914532 39914532 C T PLEKHG2 Missense_Mutation p.S920F 0.52 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-GN-A262-06 19 41711993 41711993 C T CYP2S1 Missense_Mutation p.P432L 0.45 deleterious(0) probably_damaging(0.991) TCGA-GN-A262-06 19 43920355 43920355 G A TEX101 Missense_Mutation p.G75R 0.45 deleterious(0.04) benign(0.442) TCGA-GN-A262-06 19 44352886 44352886 T C ZNF283 3'UTR 0.33 TCGA-GN-A262-06 19 4511665 4511665 C T PLIN4 Silent p.G755G 0.36 TCGA-GN-A262-06 19 4511666 4511666 C T PLIN4 Missense_Mutation p.G755E 0.35 deleterious(0) probably_damaging(0.997) TCGA-GN-A262-06 19 45381958 45381958 T C PVRL2 Intron 0.44 TCGA-GN-A262-06 19 45681368 45681368 C T TRAPPC6A Missense_Mutation p.E37K 0.50 tolerated(0.26) benign(0) TCGA-GN-A262-06 19 46832713 46832713 C T HIF3A Missense_Mutation p.P564S 0.58 tolerated_low_confidence(0.4) benign(0.004) TCGA-GN-A262-06 19 47234012 47234013 - CA STRN4 Frame_Shift_Ins p.Q286Cfs*8 0.33 TCGA-GN-A262-06 19 49207161 49207161 C T FUT2 Silent p.F316F 0.47 TCGA-GN-A262-06 19 50086975 50086975 G A PRRG2 Splice_Site p.X87_splice 0.52 TCGA-GN-A262-06 19 51517999 51517999 G A KLK10 3'UTR 0.44 TCGA-GN-A262-06 19 51729603 51729603 G A CD33 Missense_Mutation p.D246N 0.48 tolerated(1) benign(0.007) TCGA-GN-A262-06 19 53014718 53014718 C T ZNF578 Missense_Mutation p.R362C 0.46 deleterious(0.02) possibly_damaging(0.627) TCGA-GN-A262-06 19 53770360 53770360 G A VN1R4 Missense_Mutation p.P187S 0.43 tolerated(0.07) possibly_damaging(0.775) TCGA-GN-A262-06 19 53912912 53912912 C T ZNF765 3'UTR 0.56 TCGA-GN-A262-06 19 53958948 53958948 C T ZNF761 RNA 0.43 TCGA-GN-A262-06 19 54175238 54175238 C T MIR1323 RNA 0.59 TCGA-GN-A262-06 19 54603039 54603039 C T OSCAR Missense_Mutation p.V24M 0.42 tolerated(0.25) benign(0.003) TCGA-GN-A262-06 19 54745699 54745699 C T LILRA6 Silent p.G137G 0.28 TCGA-GN-A262-06 19 55396921 55396921 G A FCAR Silent p.L115L 0.56 TCGA-GN-A262-06 19 56228167 56228167 G A NLRP9 Missense_Mutation p.P753S 0.47 tolerated(0.15) benign(0.015) TCGA-GN-A262-06 19 56244763 56244763 C T NLRP9 Missense_Mutation p.R145Q 0.47 tolerated(0.17) benign(0.043) TCGA-GN-A262-06 19 56321130 56321130 C T NLRP11 Silent p.G282G 0.40 TCGA-GN-A262-06 19 57175863 57175863 G A ZNF835 Missense_Mutation p.S235L 0.50 deleterious(0.02) possibly_damaging(0.656) TCGA-GN-A262-06 19 5778646 5778646 G A CATSPERD Missense_Mutation p.G786R 0.48 deleterious_low_confidence(0) possibly_damaging(0.763) TCGA-GN-A262-06 19 58152816 58152816 C T ZNF211 Missense_Mutation p.S386L 0.37 tolerated(0.78) possibly_damaging(0.636) TCGA-GN-A262-06 19 6712354 6712354 C T C3 Missense_Mutation p.D395N 0.45 tolerated(0.59) benign(0.004) TCGA-GN-A262-06 19 7682655 7682655 G A CAMSAP3 Silent p.K1181K 0.49 TCGA-GN-A262-06 19 7763658 7763658 C T FCER2 Nonsense_Mutation p.W35* 0.36 TCGA-GN-A262-06 19 8165822 8165822 C T FBN3 Silent p.P1708P 0.47 TCGA-GN-A262-06 19 8998736 8998736 C T MUC16 Missense_Mutation p.G13616E 0.40 possibly_damaging(0.619) TCGA-GN-A262-06 19 9362304 9362304 C T OR7E24 Silent p.F195F 0.31 TCGA-GN-A262-06 1 1102527 1102527 G A MIR200B RNA 0.45 TCGA-GN-A262-06 1 113241402 113241402 G A MOV10 Silent p.K858K 0.95 TCGA-GN-A262-06 1 113241403 113241403 G A MOV10 Missense_Mutation p.D859N 0.95 deleterious(0.03) benign(0.05) TCGA-GN-A262-06 1 11561796 11561796 C T PTCHD2 Silent p.A249A 0.60 TCGA-GN-A262-06 1 11561797 11561797 C T PTCHD2 Missense_Mutation p.R250C 0.60 deleterious(0.01) possibly_damaging(0.891) TCGA-GN-A262-06 1 1387775 1387775 C T ATAD3C Silent p.F61F 0.51 TCGA-GN-A262-06 1 157667100 157667100 T C FCRL3 Missense_Mutation p.Q225R 0.50 tolerated(0.13) benign(0.261) TCGA-GN-A262-06 1 157765757 157765757 G A FCRL1 3'UTR 0.60 TCGA-GN-A262-06 1 158047896 158047896 C T KIRREL Silent p.A106A 0.46 TCGA-GN-A262-06 1 158047897 158047897 C T KIRREL Silent p.L107L 0.45 TCGA-GN-A262-06 1 159779306 159779306 C T FCRL6 Missense_Mutation p.S240F 0.56 tolerated(0.61) possibly_damaging(0.502) TCGA-GN-A262-06 1 159900130 159900130 C T IGSF9 Missense_Mutation p.G638E 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 1 16344347 16344347 C T HSPB7 Missense_Mutation p.D38N 0.56 tolerated_low_confidence(0.2) benign(0.003) TCGA-GN-A262-06 1 164769004 164769004 C T PBX1 Silent p.S193S 0.42 TCGA-GN-A262-06 1 173552668 173552668 C T SLC9C2 Missense_Mutation p.R206K 0.49 tolerated(0.93) benign(0) TCGA-GN-A262-06 1 176659412 176659412 G A PAPPA2 Silent p.K759K 0.41 TCGA-GN-A262-06 1 180166236 180166236 C T QSOX1 3'UTR 0.54 TCGA-GN-A262-06 1 180905588 180905588 G A KIAA1614 Missense_Mutation p.R848K 0.55 tolerated(0.32) benign(0.148) TCGA-GN-A262-06 1 181740488 181740488 G A CACNA1E Silent p.R1647R 0.27 TCGA-GN-A262-06 1 1849869 1849869 G A TMEM52 Missense_Mutation p.L58F 0.58 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A262-06 1 196953220 196953220 C T CFHR5 Missense_Mutation p.S128L 0.36 tolerated(0.11) benign(0.278) TCGA-GN-A262-06 1 197030188 197030188 C T F13B Missense_Mutation p.E157K 0.39 tolerated(0.12) possibly_damaging(0.595) TCGA-GN-A262-06 1 197398614 197398614 C T CRB1 Silent p.S904S 0.50 TCGA-GN-A262-06 1 19981520 19981520 G A NBL1 Silent p.T34T 0.42 TCGA-GN-A262-06 1 20097818 20097818 G A TMCO4 Missense_Mutation p.P113S 0.49 tolerated(0.25) possibly_damaging(0.786) TCGA-GN-A262-06 1 204953197 204953197 A G NFASC Intron 0.48 TCGA-GN-A262-06 1 20987434 20987434 G A DDOST Missense_Mutation p.L86F 0.37 deleterious(0) probably_damaging(0.998) TCGA-GN-A262-06 1 21009241 21009241 C T KIF17 Missense_Mutation p.E790K 0.50 deleterious(0.03) probably_damaging(0.952) TCGA-GN-A262-06 1 220170519 220170519 G A EPRS Nonsense_Mutation p.Q783* 0.51 TCGA-GN-A262-06 1 23707948 23707948 T A TCEA3 3'UTR 0.44 TCGA-GN-A262-06 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.52 probably_damaging(0.992) TCGA-GN-A262-06 1 247065900 247065900 A T AHCTF1 Missense_Mutation p.N357K 0.44 deleterious(0) possibly_damaging(0.821) TCGA-GN-A262-06 1 248436262 248436262 G A OR2T33 Silent p.P285P 0.41 TCGA-GN-A262-06 1 248616810 248616810 G A OR2T2 Missense_Mutation p.A238T 0.37 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 1 249142360 249142360 C T ZNF672 Missense_Mutation p.S296F 0.44 deleterious(0) benign(0.151) TCGA-GN-A262-06 1 26650801 26650801 G A AIM1L Missense_Mutation p.R653C 0.32 deleterious(0) possibly_damaging(0.891) TCGA-GN-A262-06 1 27332474 27332474 G A FAM46B Silent p.L413L 0.44 TCGA-GN-A262-06 1 29542534 29542534 G A MECR Missense_Mutation p.P130L 0.51 tolerated(0.15) benign(0.191) TCGA-GN-A262-06 1 32043041 32043041 C T TINAGL1 Missense_Mutation p.P98S 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A262-06 1 32092611 32092611 G C HCRTR1 3'UTR 0.34 TCGA-GN-A262-06 1 32653693 32653693 C A TXLNA Missense_Mutation p.R246S 0.58 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 1 32745524 32745524 C T LCK Missense_Mutation p.T375I 0.46 tolerated(0.11) benign(0.039) TCGA-GN-A262-06 1 32745525 32745525 C T LCK Silent p.T375T 0.46 TCGA-GN-A262-06 1 3391301 3391301 C T ARHGEF16 Silent p.S445S 0.39 TCGA-GN-A262-06 1 42046823 42046823 G A HIVEP3 Missense_Mutation p.P1216S 0.53 possibly_damaging(0.628) TCGA-GN-A262-06 1 43829641 43829641 G A ELOVL1 Silent p.P262P 0.39 TCGA-GN-A262-06 1 63894447 63894447 T A ALG6 Missense_Mutation p.W368R 0.50 deleterious(0) probably_damaging(0.998) TCGA-GN-A262-06 1 6635078 6635078 G A TAS1R1 Missense_Mutation p.V296M 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 1 75699690 75699690 C T SLC44A5 Silent p.V278V 1.00 TCGA-GN-A262-06 1 8424277 8424277 G A RERE Silent p.L527L 0.51 TCGA-GN-A262-06 20 13755845 13755845 G A ESF1 Silent p.F369F 0.48 TCGA-GN-A262-06 20 25203498 25203498 C T ENTPD6 Missense_Mutation p.A357V 0.55 tolerated(0.38) benign(0.038) TCGA-GN-A262-06 20 36031704 36031704 C T SRC Silent p.T511T 0.38 TCGA-GN-A262-06 20 39750723 39750723 G T TOP1 Missense_Mutation p.R708L 0.46 deleterious(0) possibly_damaging(0.624) TCGA-GN-A262-06 20 40944562 40944562 G A PTPRT Missense_Mutation p.S647L 0.43 deleterious(0.01) benign(0.163) TCGA-GN-A262-06 20 42169531 42169531 C T L3MBTL1 Intron 0.59 TCGA-GN-A262-06 20 44168086 44168086 G A WFDC6 5'UTR 0.29 TCGA-GN-A262-06 20 44429737 44429737 G A DNTTIP1 Missense_Mutation p.E133K 0.37 tolerated(0.27) benign(0.005) TCGA-GN-A262-06 20 47733717 47733717 C T STAU1 Silent p.Q526Q 0.47 TCGA-GN-A262-06 20 50139794 50139794 G A NFATC2 Missense_Mutation p.P329L 0.40 tolerated(0.66) possibly_damaging(0.52) TCGA-GN-A262-06 20 57829289 57829289 C T ZNF831 Missense_Mutation p.H1509Y 0.53 deleterious(0.03) possibly_damaging(0.796) TCGA-GN-A262-06 20 62328250 62328250 G A TNFRSF6B Missense_Mutation p.G44R 0.42 tolerated(0.91) benign(0.003) TCGA-GN-A262-06 20 9353698 9353698 G A PLCB4 Missense_Mutation p.G231R 0.41 tolerated(0.12) benign(0.021) TCGA-GN-A262-06 21 10914443 10914443 C G TPTE Splice_Site p.X426_splice 0.14 TCGA-GN-A262-06 21 41427756 41427756 C T DSCAM Missense_Mutation p.R1644Q 0.36 tolerated(0.18) possibly_damaging(0.82) TCGA-GN-A262-06 21 41452109 41452109 C T DSCAM Missense_Mutation p.E1464K 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A262-06 21 41684158 41684158 G A DSCAM Missense_Mutation p.P638S 0.33 tolerated(0.83) benign(0.06) TCGA-GN-A262-06 21 43539232 43539232 C T UMODL1 Silent p.S957S 0.39 TCGA-GN-A262-06 22 30735145 30735145 C T SF3A1 Missense_Mutation p.E491K 0.44 deleterious(0) possibly_damaging(0.899) TCGA-GN-A262-06 22 39883656 39883656 G A MGAT3 Missense_Mutation p.E102K 0.51 deleterious_low_confidence(0.02) benign(0.173) TCGA-GN-A262-06 22 46657021 46657021 G A PKDREJ Silent p.L733L 0.43 TCGA-GN-A262-06 22 50657236 50657236 C T TUBGCP6 Missense_Mutation p.D1573N 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-GN-A262-06 2 107459731 107459731 C T ST6GAL2 Missense_Mutation p.G235R 0.61 benign(0.176) TCGA-GN-A262-06 2 113587874 113587874 C T IL1B 3'UTR 0.49 TCGA-GN-A262-06 2 118582670 118582670 C T DDX18 Missense_Mutation p.A454V 0.42 tolerated(0.1) possibly_damaging(0.463) TCGA-GN-A262-06 2 118864324 118864324 C T INSIG2 Silent p.F127F 0.45 TCGA-GN-A262-06 2 141660609 141660609 C T LRP1B Missense_Mutation p.D1216N 0.26 possibly_damaging(0.539) TCGA-GN-A262-06 2 172778966 172778966 G A HAT1 5'Flank 0.54 TCGA-GN-A262-06 2 176944868 176944868 C T EVX2 Silent p.P466P 0.50 TCGA-GN-A262-06 2 179318186 179318186 G A DFNB59 Missense_Mutation p.G17E 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 2 179318187 179318187 G A DFNB59 Silent p.G17G 0.51 TCGA-GN-A262-06 2 179429054 179429054 C T TTN Missense_Mutation p.E27269K 0.55 TCGA-GN-A262-06 2 179611551 179611551 C T TTN Intron 0.38 TCGA-GN-A262-06 2 179611806 179611806 G A TTN Intron 0.47 TCGA-GN-A262-06 2 179634464 179634464 C T TTN Silent p.S2948S 0.40 TCGA-GN-A262-06 2 21235018 21235018 G A APOB Silent p.T1574T 0.45 TCGA-GN-A262-06 2 215831649 215831649 G A ABCA12 Missense_Mutation p.S1936F 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 2 219507627 219507627 G A ZNF142 Silent p.F1204F 0.49 TCGA-GN-A262-06 2 220399909 220399909 C T ASIC4 Silent p.G472G 0.32 TCGA-GN-A262-06 2 232326634 232326634 G A NCL Missense_Mutation p.P77L 0.46 unknown(0) TCGA-GN-A262-06 2 233677153 233677153 G A GIGYF2 Missense_Mutation p.D708N 0.50 possibly_damaging(0.813) TCGA-GN-A262-06 2 241658603 241658603 G A KIF1A Silent p.S1678S 0.52 TCGA-GN-A262-06 2 241660367 241660367 G A KIF1A Missense_Mutation p.S1611F 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 2 241660412 241660412 G A KIF1A Missense_Mutation p.S1596F 0.41 deleterious(0) benign(0.418) TCGA-GN-A262-06 2 27804562 27804562 G A C2orf16 Missense_Mutation p.R1708K 0.48 tolerated(0.3) benign(0.321) TCGA-GN-A262-06 2 27804563 27804563 A T C2orf16 Missense_Mutation p.R1708S 0.48 tolerated(0.07) possibly_damaging(0.544) TCGA-GN-A262-06 2 29451808 29451808 C T ALK Silent p.G919G 0.68 TCGA-GN-A262-06 2 31152289 31152289 G A GALNT14 Missense_Mutation p.P380S 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 2 43015740 43015740 C T HAAO Missense_Mutation p.E30K 0.45 tolerated(0.75) benign(0.002) TCGA-GN-A262-06 2 43927739 43927739 C T PLEKHH2 Missense_Mutation p.P548S 0.46 deleterious(0.04) benign(0.103) TCGA-GN-A262-06 2 44459548 44459548 T C PPM1B 3'Flank 0.50 TCGA-GN-A262-06 2 44547555 44547555 C T SLC3A1 Missense_Mutation p.S612L 0.49 tolerated(0.15) benign(0.009) TCGA-GN-A262-06 2 69098191 69098191 G A BMP10 Silent p.P100P 0.48 TCGA-GN-A262-06 2 69704072 69704072 C A AAK1 Missense_Mutation p.D911Y 0.47 deleterious(0) possibly_damaging(0.862) TCGA-GN-A262-06 2 96689126 96689126 C A GPAT2 Missense_Mutation p.W653C 0.47 deleterious(0) possibly_damaging(0.878) TCGA-GN-A262-06 2 96809636 96809636 G T DUSP2 Silent p.R291R 0.43 TCGA-GN-A262-06 3 105404212 105404212 G A CBLB Missense_Mutation p.S718F 1.00 tolerated_low_confidence(0.39) benign(0.121) TCGA-GN-A262-06 3 122003273 122003273 C T CASR Silent p.A834A 0.94 TCGA-GN-A262-06 3 134079079 134079079 C T AMOTL2 Missense_Mutation p.M584I 0.94 deleterious(0.01) possibly_damaging(0.743) TCGA-GN-A262-06 3 155210562 155210562 G A PLCH1 Nonsense_Mutation p.Q743* 0.95 TCGA-GN-A262-06 3 155211994 155211994 G A PLCH1 Silent p.N694N 1.00 TCGA-GN-A262-06 3 15711867 15711867 G A ANKRD28 Silent p.S1024S 0.95 TCGA-GN-A262-06 3 160942812 160942812 C T NMD3 Missense_Mutation p.P47S 0.96 tolerated(0.06) probably_damaging(0.997) TCGA-GN-A262-06 3 160942813 160942813 C T NMD3 Missense_Mutation p.P47L 0.96 deleterious(0) possibly_damaging(0.777) TCGA-GN-A262-06 3 193176911 193176911 C T ATP13A4 Missense_Mutation p.G545R 0.91 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 3 2942419 2942419 G A CNTN4 Missense_Mutation p.E331K 1.00 deleterious(0.01) probably_damaging(0.987) TCGA-GN-A262-06 3 38793949 38793949 G A SCN10A Missense_Mutation p.H506Y 1.00 tolerated(0.22) benign(0.303) TCGA-GN-A262-06 3 49689992 49689992 C T BSN Silent p.S1001S 0.96 TCGA-GN-A262-06 3 50415234 50415234 C T CACNA2D2 Missense_Mutation p.G494R 1.00 deleterious(0.02) probably_damaging(0.989) TCGA-GN-A262-06 4 123850275 123850275 G T SPATA5 Silent p.V123V 0.09 TCGA-GN-A262-06 4 153247170 153247170 G C FBXW7 Silent p.V544V 0.93 TCGA-GN-A262-06 4 153247304 153247304 G A FBXW7 Missense_Mutation p.H500Y 1.00 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 4 165961274 165961274 C T TRIM60 Missense_Mutation p.P17L 0.51 tolerated(0.16) benign(0.211) TCGA-GN-A262-06 4 17524612 17524612 C T CLRN2 Missense_Mutation p.P127S 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 4 178360783 178360783 A T AGA Missense_Mutation p.V114E 0.40 deleterious(0) probably_damaging(0.999) TCGA-GN-A262-06 4 44693752 44693752 C T GUF1 Missense_Mutation p.P517S 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 4 55972009 55972009 G A KDR Silent p.F545F 0.49 TCGA-GN-A262-06 4 56885642 56885642 C T CEP135 Missense_Mutation p.H1046Y 0.55 deleterious(0) benign(0.293) TCGA-GN-A262-06 4 68795709 68795709 G A TMPRSS11A Missense_Mutation p.P127S 0.53 tolerated(0.1) probably_damaging(0.941) TCGA-GN-A262-06 4 69962467 69962467 T C UGT2B7 Missense_Mutation p.Y77H 0.43 deleterious(0.01) benign(0.087) TCGA-GN-A262-06 4 70361117 70361117 G A UGT2B4 Missense_Mutation p.P155S 0.40 deleterious(0.03) possibly_damaging(0.612) TCGA-GN-A262-06 4 70504706 70504706 C T UGT2A2 Missense_Mutation p.R218K 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A262-06 4 71508317 71508317 C T ENAM Missense_Mutation p.P392S 0.45 deleterious(0.01) possibly_damaging(0.784) TCGA-GN-A262-06 4 72263331 72263331 C T SLC4A4 Silent p.S256S 0.42 TCGA-GN-A262-06 4 74270068 74270068 C T ALB Silent p.S8S 0.38 TCGA-GN-A262-06 4 79399090 79399090 G A FRAS1 Missense_Mutation p.G2658E 0.43 probably_damaging(0.988) TCGA-GN-A262-06 5 13781030 13781030 G A DNAH5 Silent p.L2953L 0.83 TCGA-GN-A262-06 5 140248790 140248790 C T PCDHA11 Silent p.S34S 0.90 TCGA-GN-A262-06 5 140768953 140768953 C T PCDHGB4 Missense_Mutation p.S501F 0.85 deleterious(0) probably_damaging(0.992) TCGA-GN-A262-06 5 140801294 140801294 C T PCDHGA11 Missense_Mutation p.S167F 1.00 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GN-A262-06 5 480074 480074 G A SLC9A3 Silent p.S508S 1.00 TCGA-GN-A262-06 5 54281137 54281137 G A ESM1 Missense_Mutation p.S70L 0.88 deleterious(0.01) possibly_damaging(0.864) TCGA-GN-A262-06 5 90074406 90074406 C T GPR98 Nonsense_Mutation p.R4277* 1.00 TCGA-GN-A262-06 6 110107591 110107591 C T FIG4 Missense_Mutation p.R679W 0.43 deleterious(0) probably_damaging(0.981) TCGA-GN-A262-06 6 111540048 111540048 C T SLC16A10 Missense_Mutation p.S373F 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 6 132179870 132179870 C T ENPP1 Missense_Mutation p.H260Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-GN-A262-06 6 152841609 152841609 G A SYNE1 Silent p.F98F 0.54 TCGA-GN-A262-06 6 161132170 161132170 A G PLG Silent p.T118T 0.50 TCGA-GN-A262-06 6 161575123 161575123 C T AGPAT4 Intron 0.58 TCGA-GN-A262-06 6 25773753 25773753 G A SLC17A4 Missense_Mutation p.G280S 0.46 tolerated(0.63) benign(0.094) TCGA-GN-A262-06 6 2833895 2833895 G A SERPINB1 Missense_Mutation p.R363W 0.42 deleterious(0.02) possibly_damaging(0.81) TCGA-GN-A262-06 6 29274667 29274667 G A OR14J1 Silent p.L67L 0.53 TCGA-GN-A262-06 6 29572298 29572298 G A GABBR1 Silent p.N895N 0.47 TCGA-GN-A262-06 6 30138389 30138389 C T TRIM15 Silent p.F281F 0.48 TCGA-GN-A262-06 6 31083966 31083966 G A CDSN Missense_Mutation p.H476Y 0.47 deleterious_low_confidence(0) benign(0.004) TCGA-GN-A262-06 6 31083967 31083967 G A CDSN Silent p.P475P 0.47 TCGA-GN-A262-06 6 31084135 31084135 G A CDSN Silent p.S419S 0.45 TCGA-GN-A262-06 6 31864150 31864150 G A EHMT2 Nonsense_Mutation p.Q158* 0.54 TCGA-GN-A262-06 6 31864151 31864151 G A EHMT2 Silent p.A157A 0.54 TCGA-GN-A262-06 6 36990132 36990132 C T FGD2 Missense_Mutation p.R482W 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 6 41119031 41119031 C T TREML1 Silent p.Q156Q 0.43 TCGA-GN-A262-06 6 41162337 41162337 C T TREML2 Missense_Mutation p.R204K 0.44 tolerated(0.14) benign(0.035) TCGA-GN-A262-06 6 41704578 41704578 G A PGC 3'UTR 0.44 TCGA-GN-A262-06 6 47681964 47681964 G A GPR115 Missense_Mutation p.R328K 0.53 tolerated(0.23) benign(0.002) TCGA-GN-A262-06 6 55625297 55625297 C T BMP5 Silent p.K354K 0.35 TCGA-GN-A262-06 6 56919413 56919413 G T KIAA1586 Nonsense_Mutation p.E706* 0.48 TCGA-GN-A262-06 6 70942291 70942291 G A COL9A1 Missense_Mutation p.P833L 0.44 probably_damaging(1) TCGA-GN-A262-06 6 73919712 73919712 G A RP11-257K9.8 3'UTR 0.59 TCGA-GN-A262-06 6 74227972 74227972 G A EEF1A1 Missense_Mutation p.H349Y 0.49 deleterious_low_confidence(0.02) benign(0.026) TCGA-GN-A262-06 6 75994365 75994365 G A TMEM30A 5'UTR 0.52 TCGA-GN-A262-06 6 90422395 90422395 G A MDN1 Silent p.L2443L 0.51 TCGA-GN-A262-06 7 100176342 100176342 G A LRCH4 Silent p.S222S 0.48 TCGA-GN-A262-06 7 107752391 107752391 C A LAMB4 Missense_Mutation p.G65W 0.48 deleterious(0) probably_damaging(0.991) TCGA-GN-A262-06 7 119914695 119914695 G C KCND2 Silent p.A3A 0.44 TCGA-GN-A262-06 7 126173922 126173922 G A GRM8 Missense_Mutation p.A505V 0.45 tolerated(0.05) benign(0.021) TCGA-GN-A262-06 7 128040438 128040438 G A IMPDH1 Silent p.S245S 0.54 TCGA-GN-A262-06 7 131815208 131815208 C T PLXNA4 3'UTR 0.51 TCGA-GN-A262-06 7 137263039 137263039 G A DGKI Nonsense_Mutation p.R559* 0.46 TCGA-GN-A262-06 7 138713490 138713490 T C ZC3HAV1L Missense_Mutation p.T240A 0.45 tolerated(0.81) benign(0.002) TCGA-GN-A262-06 7 139754564 139754564 C T PARP12 Splice_Site p.X254_splice 0.37 TCGA-GN-A262-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-GN-A262-06 7 149129698 149129698 G A ZNF777 Silent p.F555F 0.41 TCGA-GN-A262-06 7 155094485 155094485 C T INSIG1 Missense_Mutation p.R245C 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 7 27147409 27147409 G A HOXA3 3'UTR 0.45 TCGA-GN-A262-06 7 31683099 31683099 C A CCDC129 Silent p.S731S 0.46 TCGA-GN-A262-06 7 35130022 35130022 C T DPY19L2P1 RNA 0.38 TCGA-GN-A262-06 7 37907434 37907434 G A NME8 Missense_Mutation p.R251Q 0.47 tolerated(0.62) benign(0.001) TCGA-GN-A262-06 7 5396874 5396874 G A TNRC18 Nonsense_Mutation p.Q1623* 0.40 TCGA-GN-A262-06 7 5662592 5662592 G A RNF216 Silent p.L891L 0.50 TCGA-GN-A262-06 7 57187687 57187687 T C ZNF479 Missense_Mutation p.T479A 0.59 tolerated(0.55) benign(0.061) TCGA-GN-A262-06 7 72436407 72436407 G A TRIM74 Silent p.N94N 0.22 TCGA-GN-A262-06 7 72658441 72658441 G A GTF2IRD2P1 RNA 0.49 TCGA-GN-A262-06 7 81388044 81388044 C T HGF Missense_Mutation p.E111K 0.48 tolerated(0.86) benign(0.001) TCGA-GN-A262-06 7 82763649 82763649 G A PCLO Missense_Mutation p.P1073S 0.62 unknown(0) TCGA-GN-A262-06 7 82784917 82784917 C T PCLO Missense_Mutation p.G347E 0.47 unknown(0) TCGA-GN-A262-06 7 82785023 82785023 C T PCLO Missense_Mutation p.G312R 0.48 unknown(0) TCGA-GN-A262-06 7 93540182 93540182 G A GNGT1 Silent p.E59E 0.46 TCGA-GN-A262-06 7 94919467 94919467 T G PPP1R9A Missense_Mutation p.M1326R 0.38 deleterious(0.03) benign(0.212) TCGA-GN-A262-06 7 96746947 96746947 C T ACN9 5'UTR 0.44 TCGA-GN-A262-06 7 97493627 97493627 G A ASNS Missense_Mutation p.P144L 0.47 deleterious(0) probably_damaging(0.969) TCGA-GN-A262-06 8 102643864 102643864 G A GRHL2 Splice_Site p.X420_splice 0.41 TCGA-GN-A262-06 8 106815111 106815111 C T ZFPM2 Missense_Mutation p.S934F 0.60 deleterious_low_confidence(0.01) benign(0.309) TCGA-GN-A262-06 8 114326961 114326961 A G CSMD3 Silent p.G80G 0.38 TCGA-GN-A262-06 8 125072474 125072474 C T FER1L6 Silent p.T976T 0.35 TCGA-GN-A262-06 8 125551344 125551344 C T TATDN1 5'Flank 0.40 TCGA-GN-A262-06 8 125551345 125551345 C T TATDN1 5'Flank 0.39 TCGA-GN-A262-06 8 136619275 136619275 C T KHDRBS3 Silent p.A295A 0.50 TCGA-GN-A262-06 8 141572558 141572558 G A AGO2 Missense_Mutation p.S171F 0.45 deleterious(0) possibly_damaging(0.878) TCGA-GN-A262-06 8 142367235 142367235 G A GPR20 Silent p.A263A 0.62 TCGA-GN-A262-06 8 144940278 144940278 C T EPPK1 Missense_Mutation p.D2382N 0.06 benign(0.132) TCGA-GN-A262-06 8 16021634 16021634 C T MSR1 Missense_Mutation p.D253N 0.46 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 8 17823531 17823531 C T PCM1 Missense_Mutation p.S960L 0.43 tolerated(0.1) probably_damaging(0.989) TCGA-GN-A262-06 8 22355571 22355571 C T PPP3CC Missense_Mutation p.R144W 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 8 24324426 24324426 T C ADAM7 Silent p.Y168Y 0.57 TCGA-GN-A262-06 8 2976104 2976104 C T CSMD1 Missense_Mutation p.E2083K 0.45 benign(0.281) TCGA-GN-A262-06 8 3205660 3205660 C T CSMD1 Missense_Mutation p.G1110R 0.40 probably_damaging(1) TCGA-GN-A262-06 8 3267060 3267060 G A CSMD1 Silent p.F543F 0.33 TCGA-GN-A262-06 8 41355112 41355112 C T GOLGA7 Missense_Mutation p.L66F 0.45 tolerated(0.17) possibly_damaging(0.642) TCGA-GN-A262-06 8 43147644 43147644 C T POTEA RNA 0.50 TCGA-GN-A262-06 8 52321203 52321203 C T PXDNL Missense_Mutation p.G994E 0.45 deleterious(0) probably_damaging(0.989) TCGA-GN-A262-06 8 52370110 52370110 G A PXDNL Silent p.S310S 0.37 TCGA-GN-A262-06 8 66525582 66525582 A T ARMC1 Missense_Mutation p.F121Y 0.55 tolerated(0.73) benign(0.004) TCGA-GN-A262-06 8 68346383 68346383 G A CPA6 Nonsense_Mutation p.R311* 0.46 TCGA-GN-A262-06 8 69021652 69021652 G A PREX2 Silent p.G980G 0.50 TCGA-GN-A262-06 8 70541837 70541837 G A SULF1 Missense_Mutation p.G736E 0.50 tolerated(0.13) benign(0.067) TCGA-GN-A262-06 8 99101486 99101486 G A C8orf47 Missense_Mutation p.E81K 0.39 deleterious(0.02) possibly_damaging(0.801) TCGA-GN-A262-06 9 100892098 100892098 G A CORO2A Silent p.S315S 0.88 TCGA-GN-A262-06 9 100892099 100892099 G A CORO2A Missense_Mutation p.S315F 0.87 deleterious(0) probably_damaging(1) TCGA-GN-A262-06 9 113251994 113251994 G A SVEP1 Silent p.I622I 0.90 TCGA-GN-A262-06 9 130700157 130700157 C T DPM2 5'UTR 1.00 TCGA-GN-A262-06 9 13110635 13110635 C T MPDZ Silent p.Q1914Q 0.38 TCGA-GN-A262-06 9 19450679 19450679 G A ACER2 3'UTR 0.35 TCGA-GN-A262-06 9 33166892 33166892 G A B4GALT1 Silent p.S92S 0.26 TCGA-GN-A262-06 9 69385982 69385982 C T ANKRD20A4 Missense_Mutation p.A140V 0.25 deleterious(0) probably_damaging(0.949) TCGA-GN-A262-06 9 71628009 71628009 C T PRKACG Missense_Mutation p.E334K 1.00 deleterious(0.04) possibly_damaging(0.704) TCGA-GN-A262-06 9 71628010 71628010 C T PRKACG Silent p.E333E 1.00 TCGA-GN-A262-06 9 93636979 93636979 G A SYK Missense_Mutation p.M343I 0.96 deleterious(0.04) probably_damaging(0.968) TCGA-GN-A262-06 9 96429453 96429453 C T PHF2 Missense_Mutation p.S760L 0.96 deleterious(0.01) unknown(0) TCGA-GN-A262-06 X 100911287 100911287 G A ARMCX2 Missense_Mutation p.L430F 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A262-06 X 10188760 10188760 G A CLCN4 Missense_Mutation p.E679K 0.42 tolerated(0.57) benign(0.002) TCGA-GN-A262-06 X 101910948 101910948 A G GPRASP1 Missense_Mutation p.I703V 0.74 deleterious(0.03) benign(0.01) TCGA-GN-A262-06 X 102864356 102864356 C T TCEAL3 Missense_Mutation p.P122S 0.24 deleterious(0.05) benign(0.422) TCGA-GN-A262-06 X 107415699 107415699 C A COL4A6 Nonsense_Mutation p.G1069* 0.25 TCGA-GN-A262-06 X 112033944 112033944 G A AMOT Missense_Mutation p.R665W 0.20 unknown(0) TCGA-GN-A262-06 X 115569005 115569005 G A SLC6A14 Silent p.E32E 0.24 TCGA-GN-A262-06 X 117700054 117700054 G A DOCK11 Missense_Mutation p.M260I 0.18 deleterious(0) probably_damaging(0.997) TCGA-GN-A262-06 X 117960162 117960162 C T ZCCHC12 Missense_Mutation p.P319S 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-GN-A262-06 X 125299827 125299827 A G DCAF12L2 Silent p.G27G 0.49 TCGA-GN-A262-06 X 129045770 129045770 C T UTP14A Missense_Mutation p.T137I 0.48 tolerated(0.09) probably_damaging(0.97) TCGA-GN-A262-06 X 132161000 132161000 G A USP26 Missense_Mutation p.P417S 0.45 tolerated(0.62) benign(0.05) TCGA-GN-A262-06 X 134948156 134948156 C T CT45A5 Splice_Site p.X57_splice 0.41 TCGA-GN-A262-06 X 135430654 135430654 C T GPR112 Missense_Mutation p.P1597S 0.26 deleterious(0.03) possibly_damaging(0.904) TCGA-GN-A262-06 X 1407659 1407659 G A CSF2RA Silent p.E117E 0.48 TCGA-GN-A262-06 X 140984263 140984263 C T MAGEC3 Intron 0.56 TCGA-GN-A262-06 X 14937958 14937958 G A MOSPD2 3'UTR 0.58 TCGA-GN-A262-06 X 151336724 151336724 G A GABRA3 Silent p.I485I 0.17 TCGA-GN-A262-06 X 151998261 151998261 C T CETN2 Missense_Mutation p.R16Q 0.23 tolerated(0.16) benign(0.002) TCGA-GN-A262-06 X 152037407 152037407 C T NSDHL Missense_Mutation p.A290V 0.19 tolerated(0.16) benign(0.062) TCGA-GN-A262-06 X 152037408 152037408 C T NSDHL Silent p.A290A 0.19 TCGA-GN-A262-06 X 152722006 152722006 G A HAUS7 Missense_Mutation p.P194S 0.73 tolerated(0.06) benign(0.273) TCGA-GN-A262-06 X 153095891 153095891 G A PDZD4 5'UTR 0.87 TCGA-GN-A262-06 X 153608125 153608125 C T EMD Missense_Mutation p.S53L 0.26 tolerated(0.07) probably_damaging(0.996) TCGA-GN-A262-06 X 153880762 153880762 C A CTAG2 Missense_Mutation p.R138L 0.17 tolerated_low_confidence(0.49) benign(0.001) TCGA-GN-A262-06 X 154007436 154007436 C T MPP1 3'UTR 0.20 TCGA-GN-A262-06 X 154182265 154182265 C T F8 Missense_Mutation p.R602Q 0.23 tolerated(0.48) benign(0.004) TCGA-GN-A262-06 X 17819307 17819307 G A RAI2 Missense_Mutation p.P275L 0.47 tolerated_low_confidence(0.12) unknown(0) TCGA-GN-A262-06 X 22196406 22196406 C T PHEX Missense_Mutation p.A500V 0.46 tolerated(0.06) benign(0.002) TCGA-GN-A262-06 X 22196407 22196407 C T PHEX Silent p.A500A 0.47 TCGA-GN-A262-06 X 29973951 29973951 G A IL1RAPL1 3'UTR 0.58 TCGA-GN-A262-06 X 34962808 34962808 T G FAM47B Silent p.S620S 0.50 TCGA-GN-A262-06 X 37028199 37028199 G A FAM47C Silent p.P572P 0.47 TCGA-GN-A262-06 X 37028201 37028201 A G FAM47C Missense_Mutation p.E573G 0.46 deleterious(0.04) possibly_damaging(0.607) TCGA-GN-A262-06 X 54048724 54048724 G A PHF8 Silent p.F123F 0.23 TCGA-GN-A262-06 X 54209119 54209119 G A FAM120C Silent p.F171F 0.23 TCGA-GN-A262-06 X 54324689 54324689 T A WNK3 Missense_Mutation p.K439N 0.20 deleterious(0) probably_damaging(0.997) TCGA-GN-A262-06 X 54324690 54324690 T A WNK3 Missense_Mutation p.K439I 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A262-06 X 55185590 55185590 G C FAM104B Missense_Mutation p.P31R 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A262-06 X 64139977 64139977 C T ZC4H2 Missense_Mutation p.E128K 0.23 tolerated(0.8) benign(0.324) TCGA-GN-A262-06 X 64140043 64140043 C T ZC4H2 Missense_Mutation p.E106K 0.17 tolerated(0.8) benign(0.138) TCGA-GN-A262-06 X 64957167 64957167 C G MSN Silent p.A406A 0.18 TCGA-GN-A262-06 X 70472589 70472589 G A ZMYM3 Missense_Mutation p.P173S 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-GN-A262-06 X 70472590 70472590 G A ZMYM3 Silent p.S172S 0.12 TCGA-GN-A262-06 X 70472882 70472882 C T ZMYM3 Missense_Mutation p.G75E 0.72 tolerated_low_confidence(0.38) possibly_damaging(0.709) TCGA-GN-A262-06 X 70518652 70518652 G A NONO Missense_Mutation p.G423R 0.26 deleterious(0) benign(0.088) TCGA-GN-A262-06 X 70787861 70787861 G A OGT Missense_Mutation p.R954Q 0.20 deleterious(0) possibly_damaging(0.881) TCGA-GN-A262-06 X 73053079 73053079 C T XIST RNA 0.28 TCGA-GN-A262-06 X 73961170 73961170 C T KIAA2022 Silent p.P1074P 0.25 TCGA-GN-A262-06 X 76845316 76845316 G A ATRX Missense_Mutation p.L2069F 0.21 possibly_damaging(0.682) TCGA-GN-A262-06 X 76845317 76845317 G A ATRX Silent p.P2068P 0.21 TCGA-GN-A262-06 X 86869004 86869004 G A KLHL4 Missense_Mutation p.D183N 0.24 deleterious(0) probably_damaging(0.923) TCGA-GN-A263-01 10 101122106 101122106 C T CNNM1 Missense_Mutation p.L661F 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 10 101507035 101507035 C T CUTC Missense_Mutation p.P154L 0.18 tolerated(0.24) benign(0.205) TCGA-GN-A263-01 10 101829562 101829562 T C CPN1 Missense_Mutation p.N162S 0.19 deleterious(0) possibly_damaging(0.625) TCGA-GN-A263-01 10 118957018 118957018 C T KCNK18 Missense_Mutation p.P7S 0.31 tolerated(0.06) possibly_damaging(0.677) TCGA-GN-A263-01 10 119798648 119798649 TT A RAB11FIP2 Frame_Shift_Del p.K367* 0.14 TCGA-GN-A263-01 10 121668556 121668556 G A SEC23IP Missense_Mutation p.E369K 0.24 deleterious(0.02) benign(0.333) TCGA-GN-A263-01 10 123987465 123987465 C T TACC2 Missense_Mutation p.S2613F 0.21 probably_damaging(0.971) TCGA-GN-A263-01 10 124402817 124402817 C T DMBT1 Missense_Mutation p.S2382L 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-GN-A263-01 10 125528188 125528188 C T CPXM2 Missense_Mutation p.G385S 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 10 12867856 12867856 C T CAMK1D Intron 0.16 TCGA-GN-A263-01 10 128973494 128973494 C T FAM196A Missense_Mutation p.G389E 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 10 134147123 134147123 C T LRRC27 Missense_Mutation p.S32F 0.22 deleterious(0) possibly_damaging(0.831) TCGA-GN-A263-01 10 22029049 22029049 C T MLLT10 Missense_Mutation p.P1016S 0.31 tolerated(0.73) benign(0.108) TCGA-GN-A263-01 10 22029050 22029050 C T MLLT10 Missense_Mutation p.P1016L 0.28 deleterious(0.02) benign(0.144) TCGA-GN-A263-01 10 26455097 26455097 G A MYO3A Missense_Mutation p.G1034E 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 10 30317817 30317817 G A KIAA1462 Silent p.F420F 0.27 TCGA-GN-A263-01 10 34400253 34400253 C A PARD3 Missense_Mutation p.E1305D 0.24 tolerated_low_confidence(0.29) benign(0.005) TCGA-GN-A263-01 10 50964955 50964955 G A OGDHL Missense_Mutation p.A81V 0.21 tolerated(0.26) benign(0.001) TCGA-GN-A263-01 10 52005144 52005144 G A ASAH2 Silent p.R66R 0.25 TCGA-GN-A263-01 10 55755466 55755466 C T PCDH15 Silent p.P937P 0.28 TCGA-GN-A263-01 10 61830618 61830618 C T ANK3 Missense_Mutation p.D3341N 0.27 benign(0.012) TCGA-GN-A263-01 10 63440998 63440998 G A C10orf107 5'UTR 0.12 TCGA-GN-A263-01 10 64564987 64564987 C T ADO Silent p.S56S 0.24 TCGA-GN-A263-01 10 64564988 64564988 C T ADO Missense_Mutation p.L57F 0.25 deleterious(0.01) possibly_damaging(0.744) TCGA-GN-A263-01 10 70043827 70043827 G A PBLD 3'UTR 0.24 TCGA-GN-A263-01 10 73053200 73053200 C T UNC5B Missense_Mutation p.S604L 0.29 tolerated(0.17) benign(0.163) TCGA-GN-A263-01 10 81371677 81371677 C T SFTPA1 Silent p.I47I 0.20 TCGA-GN-A263-01 10 86237419 86237419 C T CCSER2 Missense_Mutation p.P775L 0.25 deleterious(0.01) possibly_damaging(0.705) TCGA-GN-A263-01 10 88769689 88769689 C T RP11-96C23.10 Splice_Site 0.26 TCGA-GN-A263-01 10 90966606 90966606 C T CH25H Silent p.K148K 0.19 TCGA-GN-A263-01 10 95083084 95083084 G A MYOF Missense_Mutation p.P1768L 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 10 95553011 95553011 G T LGI1 Nonsense_Mutation p.E248* 0.25 TCGA-GN-A263-01 10 96534972 96534972 G A CYP2C19 Missense_Mutation p.G109E 0.19 deleterious(0.03) benign(0.105) TCGA-GN-A263-01 10 98084132 98084132 G A DNTT Missense_Mutation p.R287Q 0.28 tolerated(0.48) benign(0.015) TCGA-GN-A263-01 10 99148021 99148021 G A RRP12 Silent p.T335T 0.27 TCGA-GN-A263-01 11 103908037 103908037 C T DDI1 Missense_Mutation p.R163C 0.15 deleterious(0.02) benign(0.046) TCGA-GN-A263-01 11 113222880 113222880 G A TTC12 Missense_Mutation p.R466K 0.24 tolerated(1) benign(0.001) TCGA-GN-A263-01 11 1157546 1157546 G A MUC5AC Missense_Mutation p.D243N 0.14 deleterious(0) benign(0.095) TCGA-GN-A263-01 11 1161987 1161987 C T MUC5AC Silent p.T526T 0.20 TCGA-GN-A263-01 11 119144732 119144732 C T CBL Nonsense_Mutation p.Q249* 0.08 TCGA-GN-A263-01 11 123995114 123995114 A G VWA5A Intron 0.27 TCGA-GN-A263-01 11 1578765 1578765 G A DUSP8 Silent p.F287F 0.18 TCGA-GN-A263-01 11 20122559 20122559 C T NAV2 Silent p.S2145S 0.28 TCGA-GN-A263-01 11 20949958 20949958 C T NELL1 Silent p.P310P 0.19 TCGA-GN-A263-01 11 3687591 3687591 G C CHRNA10 Missense_Mutation p.P367A 0.28 tolerated(0.18) benign(0.014) TCGA-GN-A263-01 11 3688978 3688978 G A CHRNA10 Missense_Mutation p.P127S 0.40 tolerated(0.91) benign(0.003) TCGA-GN-A263-01 11 4567089 4567089 G A OR52M1 Missense_Mutation p.M223I 0.22 tolerated(0.2) benign(0.007) TCGA-GN-A263-01 11 45919724 45919724 G A MAPK8IP1 Missense_Mutation p.D64N 0.25 deleterious_low_confidence(0.02) benign(0.154) TCGA-GN-A263-01 11 46564304 46564304 C T AMBRA1 Silent p.R331R 0.27 TCGA-GN-A263-01 11 46564305 46564305 C T AMBRA1 Missense_Mutation p.R331Q 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.767) TCGA-GN-A263-01 11 48161159 48161159 C T PTPRJ Silent p.A758A 0.28 TCGA-GN-A263-01 11 4903102 4903102 C T OR51T1 Silent p.F18F 0.17 TCGA-GN-A263-01 11 4945077 4945077 G A OR51G1 Silent p.L165L 0.31 TCGA-GN-A263-01 11 5013318 5013318 C T MMP26 Silent p.L240L 0.26 TCGA-GN-A263-01 11 51411595 51411595 G A OR4A5 Silent p.F267F 0.13 TCGA-GN-A263-01 11 555754 555754 C T C11orf35 Silent p.R518R 0.23 TCGA-GN-A263-01 11 55659052 55659052 C T TRIM51 Missense_Mutation p.P435S 0.24 tolerated(0.38) benign(0.074) TCGA-GN-A263-01 11 55861627 55861627 C T OR8I2 Missense_Mutation p.P282S 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 11 55927605 55927605 G A OR8K5 Silent p.I63I 0.26 TCGA-GN-A263-01 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.19 TCGA-GN-A263-01 11 56757098 56757098 C T OR5AK2 Missense_Mutation p.S237F 0.25 deleterious(0) possibly_damaging(0.74) TCGA-GN-A263-01 11 59210689 59210689 C T OR5A1 Silent p.I16I 0.23 TCGA-GN-A263-01 11 60292761 60292761 C T MS4A13 Missense_Mutation p.H90Y 0.21 tolerated(0.13) benign(0.002) TCGA-GN-A263-01 11 6129055 6129055 C T OR56B4 Missense_Mutation p.S16F 0.18 deleterious(0.01) benign(0.043) TCGA-GN-A263-01 11 61503251 61503251 C T DAGLA Missense_Mutation p.P418L 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 11 6261744 6261744 G A CNGA4 Silent p.R240R 0.29 TCGA-GN-A263-01 11 63176211 63176211 G A SLC22A9 Missense_Mutation p.M487I 0.35 tolerated(0.08) benign(0) TCGA-GN-A263-01 11 71148959 71148959 C T DHCR7 Missense_Mutation p.E288K 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 11 7324553 7324553 G A SYT9 Silent p.G143G 0.39 TCGA-GN-A263-01 11 76903100 76903100 C T MYO7A Missense_Mutation p.S1310F 0.35 tolerated(0.22) probably_damaging(0.953) TCGA-GN-A263-01 11 77377930 77377930 G A RSF1 3'UTR 0.24 TCGA-GN-A263-01 11 77378461 77378461 C T RSF1 Missense_Mutation p.R1276Q 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-GN-A263-01 11 88780869 88780869 C T GRM5 Missense_Mutation p.G58R 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 11 89421804 89421804 G A FOLH1B RNA 0.21 TCGA-GN-A263-01 11 89892432 89892432 G A NAALAD2 Missense_Mutation p.D306N 0.22 tolerated(0.12) benign(0.014) TCGA-GN-A263-01 11 903030 903030 G A CHID1 Missense_Mutation p.R90C 0.34 deleterious(0) possibly_damaging(0.828) TCGA-GN-A263-01 11 95590720 95590720 C T MTMR2 Missense_Mutation p.R217K 0.25 deleterious(0) probably_damaging(0.915) TCGA-GN-A263-01 11 95590721 95590721 T A MTMR2 Missense_Mutation p.R217W 0.25 deleterious(0) probably_damaging(0.997) TCGA-GN-A263-01 11 96124993 96124993 G A JRKL Missense_Mutation p.E394K 0.19 tolerated(0.17) possibly_damaging(0.577) TCGA-GN-A263-01 12 113334601 113334601 C T RPH3A 3'UTR 0.12 TCGA-GN-A263-01 12 11420800 11420800 C T PRB3 Missense_Mutation p.G128E 0.31 deleterious(0.01) unknown(0) TCGA-GN-A263-01 12 117962858 117962858 C T KSR2 Missense_Mutation p.G673E 0.11 deleterious(0) probably_damaging(0.965) TCGA-GN-A263-01 12 118673365 118673365 G A TAOK3 Silent p.Y183Y 0.21 TCGA-GN-A263-01 12 11905391 11905391 G A ETV6 Missense_Mutation p.R14Q 0.23 tolerated(0.1) benign(0.012) TCGA-GN-A263-01 12 123200933 123200933 G A HCAR3 Missense_Mutation p.L118F 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 12 14940385 14940385 G A WBP11 Missense_Mutation p.P514S 0.29 tolerated_low_confidence(0.23) unknown(0) TCGA-GN-A263-01 12 18800874 18800874 C T PIK3C2G Missense_Mutation p.T1417I 0.21 tolerated(0.07) benign(0.365) TCGA-GN-A263-01 12 18800909 18800909 A G PIK3C2G Missense_Mutation p.S1429G 0.21 deleterious(0.05) benign(0.211) TCGA-GN-A263-01 12 347111 347111 G A SLC6A13 Missense_Mutation p.P182S 0.28 tolerated(0.16) benign(0.277) TCGA-GN-A263-01 12 4737889 4737889 C T AKAP3 Missense_Mutation p.R60Q 0.22 tolerated(0.22) benign(0.007) TCGA-GN-A263-01 12 49445649 49445649 G A KMT2D Missense_Mutation p.S606F 0.22 unknown(0) TCGA-GN-A263-01 12 50369410 50369410 G A AQP6 Missense_Mutation p.E269K 0.33 tolerated(0.47) benign(0.005) TCGA-GN-A263-01 12 51584204 51584204 C T POU6F1 Silent p.Q244Q 0.20 TCGA-GN-A263-01 12 53837387 53837387 C T PRR13 Missense_Mutation p.P78S 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A263-01 12 53877250 53877250 C T MAP3K12 Missense_Mutation p.R499Q 0.22 deleterious(0) benign(0.297) TCGA-GN-A263-01 12 70986324 70986324 G A PTPRB Silent p.A506A 0.22 TCGA-GN-A263-01 12 72372731 72372731 G A TPH2 Splice_Site p.X269_splice 0.23 TCGA-GN-A263-01 12 7843004 7843004 C T GDF3 Missense_Mutation p.D189N 0.22 tolerated(0.22) benign(0.343) TCGA-GN-A263-01 12 8085617 8085617 A T SLC2A3 Missense_Mutation p.F79I 0.32 deleterious(0.02) possibly_damaging(0.786) TCGA-GN-A263-01 12 8376702 8376702 C T FAM90A1 Missense_Mutation p.G78E 0.09 deleterious(0.04) benign(0.187) TCGA-GN-A263-01 12 93244958 93244958 C A EEA1 Nonsense_Mutation p.E243* 0.33 TCGA-GN-A263-01 12 93244959 93244959 C T EEA1 Silent p.L242L 0.31 TCGA-GN-A263-01 13 101759944 101759944 C T NALCN Missense_Mutation p.E825K 0.28 deleterious(0.04) possibly_damaging(0.829) TCGA-GN-A263-01 13 30072650 30072650 G A MTUS2 Silent p.K1268K 0.23 TCGA-GN-A263-01 13 33739502 33739502 C T STARD13 Missense_Mutation p.E99K 0.23 deleterious(0) possibly_damaging(0.845) TCGA-GN-A263-01 13 37269359 37269359 C T SERTM1 Silent p.F48F 0.19 TCGA-GN-A263-01 13 37269585 37269585 C T SERTM1 3'UTR 0.22 TCGA-GN-A263-01 13 53608491 53608491 C T OLFM4 Silent p.S71S 0.23 TCGA-GN-A263-01 14 102549592 102549592 G A HSP90AA1 Missense_Mutation p.R634W 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A263-01 14 102910032 102910032 C T TECPR2 Missense_Mutation p.P934L 0.34 deleterious(0.05) benign(0.019) TCGA-GN-A263-01 14 102910033 102910033 C T TECPR2 Silent p.P934P 0.34 TCGA-GN-A263-01 14 104641976 104641976 C A KIF26A Missense_Mutation p.P951T 0.12 deleterious(0.03) benign(0.335) TCGA-GN-A263-01 14 104641977 104641977 C T KIF26A Missense_Mutation p.P951L 0.12 deleterious(0.02) benign(0.019) TCGA-GN-A263-01 14 106053596 106053596 G A IGHA2 Missense_Mutation p.T234M 0.14 deleterious(0) probably_damaging(0.996) TCGA-GN-A263-01 14 106586347 106586347 G A IGHV3-13 Silent p.F46F 0.15 TCGA-GN-A263-01 14 20923850 20923850 G A APEX1 Missense_Mutation p.E16K 0.22 tolerated(0.21) benign(0.005) TCGA-GN-A263-01 14 21543247 21543247 A G ARHGEF40 Missense_Mutation p.E453G 0.30 tolerated(0.26) benign(0.002) TCGA-GN-A263-01 14 21960666 21960666 G A TOX4 Splice_Site p.X298_splice 0.20 TCGA-GN-A263-01 14 21960667 21960667 G A TOX4 Missense_Mutation p.A298T 0.20 tolerated(0.41) benign(0) TCGA-GN-A263-01 14 22038356 22038356 G A OR10G3 Nonsense_Mutation p.Q174* 0.33 TCGA-GN-A263-01 14 24552072 24552072 G A NRL 5'UTR 0.29 TCGA-GN-A263-01 14 26939638 26939638 G A NOVA1 Intron 0.38 TCGA-GN-A263-01 14 31762778 31762778 G A RP11-596D21.1 Intron 0.27 TCGA-GN-A263-01 14 35550507 35550507 C T FAM177A1 3'UTR 0.46 TCGA-GN-A263-01 14 62259558 62259558 C T SNAPC1 Missense_Mutation p.P337L 0.28 tolerated(0.08) benign(0.009) TCGA-GN-A263-01 14 67431951 67431951 G A GPHN Missense_Mutation p.R291Q 0.33 deleterious(0.02) possibly_damaging(0.902) TCGA-GN-A263-01 14 68028972 68028972 C T PLEKHH1 Silent p.A208A 0.21 TCGA-GN-A263-01 14 70527578 70527578 C T SLC8A3 Silent p.P621P 0.19 TCGA-GN-A263-01 14 77275455 77275455 G A ANGEL1 Missense_Mutation p.P199L 0.15 deleterious(0) benign(0.342) TCGA-GN-A263-01 14 77715719 77715719 C T TMEM63C Silent p.I652I 0.34 TCGA-GN-A263-01 14 95053780 95053780 G A SERPINA5 Missense_Mutation p.M27I 0.28 tolerated(0.19) benign(0.005) TCGA-GN-A263-01 15 33194231 33194231 C T FMN1 Missense_Mutation p.E907K 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A263-01 15 38229154 38229154 G A TMCO5A Missense_Mutation p.E83K 0.25 tolerated(0.79) possibly_damaging(0.757) TCGA-GN-A263-01 15 41044347 41044347 C T RMDN3 Missense_Mutation p.A73T 0.30 deleterious(0.02) probably_damaging(0.977) TCGA-GN-A263-01 15 41044348 41044348 C T RMDN3 Silent p.G72G 0.31 TCGA-GN-A263-01 15 42285056 42285056 G A PLA2G4E Missense_Mutation p.S450F 0.26 tolerated(0.15) benign(0.206) TCGA-GN-A263-01 15 43654046 43654046 C T ZSCAN29 Missense_Mutation p.R595K 0.28 tolerated(0.11) probably_damaging(0.986) TCGA-GN-A263-01 15 43816125 43816125 C T MAP1A Silent p.A818A 0.31 TCGA-GN-A263-01 15 43819889 43819889 C T MAP1A Missense_Mutation p.P2073L 0.19 benign(0.035) TCGA-GN-A263-01 15 45781073 45781073 C T SLC30A4 Missense_Mutation p.G287D 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A263-01 15 58001015 58001015 G A POLR2M Missense_Mutation p.E73K 0.28 tolerated(0.1) benign(0.023) TCGA-GN-A263-01 15 67768157 67768157 G A IQCH Splice_Site p.X933_splice 0.23 TCGA-GN-A263-01 15 72193670 72193670 C A MYO9A Missense_Mutation p.K1004N 0.23 deleterious(0) probably_damaging(0.978) TCGA-GN-A263-01 15 75043542 75043542 G A CYP1A2 Missense_Mutation p.D282N 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 15 78390328 78390328 C T SH2D7 Silent p.I108I 0.26 TCGA-GN-A263-01 15 90611734 90611734 C T ZNF710 Silent p.L455L 0.26 TCGA-GN-A263-01 15 99678314 99678314 C T TTC23 Silent p.S415S 0.17 TCGA-GN-A263-01 16 15690448 15690448 G A KIAA0430 3'UTR 0.24 TCGA-GN-A263-01 16 15690449 15690449 G A KIAA0430 3'UTR 0.24 TCGA-GN-A263-01 16 19547582 19547582 A G CCP110 Silent p.E197E 0.15 TCGA-GN-A263-01 16 20486756 20486756 C T ACSM2A Missense_Mutation p.L323F 0.25 tolerated(0.17) possibly_damaging(0.453) TCGA-GN-A263-01 16 20974933 20974933 G A DNAH3 Missense_Mutation p.R3425C 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 16 20976343 20976343 C T DNAH3 Missense_Mutation p.E2955K 0.20 tolerated(0.3) benign(0.014) TCGA-GN-A263-01 16 20976344 20976344 C T DNAH3 Silent p.E2954E 0.21 TCGA-GN-A263-01 16 22144410 22144410 G C VWA3A Missense_Mutation p.D688H 0.17 deleterious(0) possibly_damaging(0.77) TCGA-GN-A263-01 16 23203837 23203837 C T SCNN1G Silent p.F261F 0.26 TCGA-GN-A263-01 16 26147192 26147192 C T HS3ST4 Nonsense_Mutation p.R332* 0.24 TCGA-GN-A263-01 16 28506027 28506027 C T APOBR Missense_Mutation p.P9S 0.16 deleterious(0) probably_damaging(0.998) TCGA-GN-A263-01 16 29913198 29913198 G A ASPHD1 Silent p.E302E 0.25 TCGA-GN-A263-01 16 30666149 30666149 C T PRR14 Silent p.I286I 0.39 TCGA-GN-A263-01 16 31157121 31157121 C T PRSS36 Missense_Mutation p.D237N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A263-01 16 320597 320597 G A RGS11 Silent p.T377T 0.37 TCGA-GN-A263-01 16 57918062 57918062 C T CNGB1 3'UTR 0.18 TCGA-GN-A263-01 16 67195768 67195768 C T FBXL8 Missense_Mutation p.A27V 0.26 tolerated(0.82) probably_damaging(0.918) TCGA-GN-A263-01 16 67195769 67195769 C T FBXL8 Silent p.A27A 0.26 TCGA-GN-A263-01 16 67910401 67910401 G A EDC4 Missense_Mutation p.G84R 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 16 72132681 72132681 G A DHX38 Missense_Mutation p.D252N 0.15 tolerated(0.41) benign(0.003) TCGA-GN-A263-01 16 76513354 76513354 G A CNTNAP4 Missense_Mutation p.G528R 0.20 deleterious(0) probably_damaging(0.972) TCGA-GN-A263-01 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.16 tolerated(1) benign(0.004) TCGA-GN-A263-01 16 78064434 78064434 C T CLEC3A Missense_Mutation p.S106F 0.31 deleterious(0) possibly_damaging(0.847) TCGA-GN-A263-01 16 81232606 81232606 C T PKD1L2 Missense_Mutation p.G402S 0.30 deleterious(0.02) benign(0.409) TCGA-GN-A263-01 16 84691333 84691333 G A KLHL36 Missense_Mutation p.R307Q 0.36 tolerated(1) benign(0.189) TCGA-GN-A263-01 16 88958762 88958762 C T CBFA2T3 Missense_Mutation p.A171T 0.28 deleterious(0.01) benign(0.37) TCGA-GN-A263-01 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.17 tolerated(0.37) benign(0.005) TCGA-GN-A263-01 17 10346726 10346726 C T MYH4 Missense_Mutation p.R1929Q 0.22 deleterious(0.02) possibly_damaging(0.905) TCGA-GN-A263-01 17 10408281 10408281 C T MYH1 Missense_Mutation p.S846N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A263-01 17 11593350 11593350 C T DNAH9 Missense_Mutation p.T1404I 0.18 benign(0.378) TCGA-GN-A263-01 17 1183293 1183293 C T TUSC5 5'UTR 0.20 TCGA-GN-A263-01 17 1650748 1650748 C T SERPINF2 Silent p.F219F 0.31 TCGA-GN-A263-01 17 16553035 16553037 AAG - ZNF624 In_Frame_Del p.L8del 0.17 TCGA-GN-A263-01 17 1673326 1673326 C T SERPINF1 Missense_Mutation p.L89F 0.20 tolerated(0.09) possibly_damaging(0.572) TCGA-GN-A263-01 17 21101819 21101819 T C TMEM11 Missense_Mutation p.K133E 0.24 tolerated(0.06) possibly_damaging(0.725) TCGA-GN-A263-01 17 26943780 26943780 G A KIAA0100 Intron 0.27 TCGA-GN-A263-01 17 29587393 29587393 C T NF1 Silent p.F1479F 0.13 TCGA-GN-A263-01 17 30815545 30815545 C T CDK5R1 Silent p.L303L 0.22 TCGA-GN-A263-01 17 3802970 3802970 C T P2RX1 Missense_Mutation p.G278E 0.31 deleterious(0.03) probably_damaging(0.928) TCGA-GN-A263-01 17 3851089 3851089 C T ATP2A3 Missense_Mutation p.E231K 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A263-01 17 39887995 39887995 C T HAP1 Silent p.L299L 0.18 TCGA-GN-A263-01 17 40175799 40175799 G C NKIRAS2 Missense_Mutation p.R155P 0.23 tolerated(0.35) benign(0.418) TCGA-GN-A263-01 17 43482359 43482359 G A ARHGAP27 Silent p.P52P 0.20 TCGA-GN-A263-01 17 46685158 46685158 T C HOXB7 3'UTR 0.14 TCGA-GN-A263-01 17 47390188 47390188 G A ZNF652 Missense_Mutation p.S307L 0.22 deleterious(0) benign(0.036) TCGA-GN-A263-01 17 48267720 48267720 G A COL1A1 Missense_Mutation p.P807S 0.31 unknown(0) TCGA-GN-A263-01 17 5048111 5048111 G A USP6 Missense_Mutation p.E649K 0.27 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-GN-A263-01 17 51901905 51901905 G A KIF2B Missense_Mutation p.R504Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 17 59067416 59067416 C T BCAS3 Missense_Mutation p.P436S 0.29 deleterious(0.04) benign(0.063) TCGA-GN-A263-01 17 59999159 59999159 G A INTS2 Silent p.F162F 0.28 TCGA-GN-A263-01 17 64876763 64876763 C T CACNG5 Missense_Mutation p.P125S 0.24 tolerated(0.26) probably_damaging(0.987) TCGA-GN-A263-01 17 71395316 71395316 C T SDK2 Silent p.V1028V 0.26 TCGA-GN-A263-01 17 72832595 72832595 C T TMEM104 Silent p.S420S 0.12 TCGA-GN-A263-01 17 74473809 74473809 G A RHBDF2 Missense_Mutation p.A273V 0.28 tolerated(0.43) benign(0.012) TCGA-GN-A263-01 17 76060964 76060964 G A TNRC6C Missense_Mutation p.V850M 0.24 tolerated(0.11) benign(0.037) TCGA-GN-A263-01 17 7701129 7701129 C T DNAH2 Nonsense_Mutation p.R2738* 0.32 TCGA-GN-A263-01 17 79857225 79857225 C T ANAPC11 Missense_Mutation p.P73S 0.23 tolerated_low_confidence(0.18) possibly_damaging(0.542) TCGA-GN-A263-01 17 900385 900385 G A TIMM22 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) unknown(0) TCGA-GN-A263-01 18 21438687 21438687 G A LAMA3 Missense_Mutation p.R1439Q 0.27 benign(0.229) TCGA-GN-A263-01 18 21487794 21487794 G A LAMA3 Missense_Mutation p.D2304N 0.30 possibly_damaging(0.812) TCGA-GN-A263-01 18 28725728 28725728 C T DSC1 Missense_Mutation p.G262E 0.29 deleterious(0) probably_damaging(0.974) TCGA-GN-A263-01 18 28918295 28918295 A T DSG1 Missense_Mutation p.N428I 0.27 deleterious(0) probably_damaging(0.973) TCGA-GN-A263-01 18 29848121 29848121 G A GAREM Missense_Mutation p.P782S 0.23 deleterious(0.04) benign(0.145) TCGA-GN-A263-01 18 40323474 40323474 C T RIT2 Missense_Mutation p.R213K 0.31 tolerated_low_confidence(1) benign(0.067) TCGA-GN-A263-01 18 43568681 43568681 G A PSTPIP2 Nonsense_Mutation p.Q334* 0.27 TCGA-GN-A263-01 18 48252450 48252450 A C MAPK4 Silent p.S324S 0.28 TCGA-GN-A263-01 18 56246704 56246704 G T ALPK2 Missense_Mutation p.P435H 0.26 tolerated(0.14) benign(0.247) TCGA-GN-A263-01 18 61234136 61234136 G A SERPINB12 Silent p.R370R 0.20 TCGA-GN-A263-01 18 9886630 9886630 C T TXNDC2 Silent p.L52L 0.18 TCGA-GN-A263-01 19 10202783 10202783 G A C19orf66 Silent p.K227K 0.17 TCGA-GN-A263-01 19 11327937 11327937 G A DOCK6 Silent p.S1227S 0.21 TCGA-GN-A263-01 19 11664867 11664867 G A ELOF1 Missense_Mutation p.S49F 0.30 tolerated(0.3) possibly_damaging(0.492) TCGA-GN-A263-01 19 11978400 11978400 C T ZNF439 Silent p.S172S 0.24 TCGA-GN-A263-01 19 14269363 14269363 C T LPHN1 Silent p.G722G 0.14 TCGA-GN-A263-01 19 14269364 14269364 C T LPHN1 Missense_Mutation p.G722E 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 19 15079155 15079155 C T SLC1A6 Missense_Mutation p.E170K 0.15 tolerated(0.26) benign(0.14) TCGA-GN-A263-01 19 15769601 15769601 C T CYP4F3 Missense_Mutation p.P460L 0.22 deleterious(0) probably_damaging(0.997) TCGA-GN-A263-01 19 17877606 17877606 A C FCHO1 Missense_Mutation p.K108T 0.29 deleterious(0) benign(0.265) TCGA-GN-A263-01 19 18322736 18322736 C T PDE4C Missense_Mutation p.V542M 0.17 deleterious(0.02) probably_damaging(1) TCGA-GN-A263-01 19 1877619 1877619 G A ABHD17A Silent p.L250L 0.13 TCGA-GN-A263-01 19 19359601 19359601 T G NCAN Missense_Mutation p.C1244G 0.23 deleterious(0.01) possibly_damaging(0.637) TCGA-GN-A263-01 19 2456692 2456692 C T LMNB2 Silent p.E80E 0.18 TCGA-GN-A263-01 19 3546112 3546112 C G MFSD12 Missense_Mutation p.G417R 0.25 probably_damaging(1) TCGA-GN-A263-01 19 36237720 36237720 C T PSENEN Missense_Mutation p.S93F 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 19 36334407 36334407 G A NPHS1 Silent p.P767P 0.21 TCGA-GN-A263-01 19 3734327 3734327 A T TJP3 Missense_Mutation p.I303F 0.27 deleterious(0) probably_damaging(0.996) TCGA-GN-A263-01 19 37734132 37734132 C T ZNF383 Missense_Mutation p.H332Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-GN-A263-01 19 38125950 38125950 C T ZFP30 Missense_Mutation p.E498K 0.31 tolerated(0.06) probably_damaging(0.994) TCGA-GN-A263-01 19 38937180 38937180 C T RYR1 Missense_Mutation p.P234S 0.28 benign(0.089) TCGA-GN-A263-01 19 3942207 3942207 G A NMRK2 Missense_Mutation p.G210E 0.20 deleterious_low_confidence(0.01) benign(0.079) TCGA-GN-A263-01 19 41088278 41088278 C T SHKBP1 Missense_Mutation p.P289L 0.25 deleterious(0.01) benign(0.146) TCGA-GN-A263-01 19 43763161 43763161 C T PSG9 Missense_Mutation p.S279N 0.25 tolerated(0.31) possibly_damaging(0.895) TCGA-GN-A263-01 19 44500360 44500360 T C ZNF155 Silent p.S128S 0.10 TCGA-GN-A263-01 19 45452559 45452559 C T APOC2 3'UTR 0.25 TCGA-GN-A263-01 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.29 TCGA-GN-A263-01 19 50306388 50306388 C T AP2A1 Silent p.V754V 0.19 TCGA-GN-A263-01 19 52327351 52327351 C T FPR3 Missense_Mutation p.T117I 0.25 deleterious(0) benign(0.403) TCGA-GN-A263-01 19 52327352 52327352 C T FPR3 Silent p.T117T 0.25 TCGA-GN-A263-01 19 54327308 54327308 C T NLRP12 Missense_Mutation p.G41S 0.31 tolerated(0.7) benign(0.044) TCGA-GN-A263-01 19 56538654 56538654 C T NLRP5 Missense_Mutation p.S352F 0.38 deleterious(0) probably_damaging(0.997) TCGA-GN-A263-01 19 590557 590557 C T HCN2 Silent p.I204I 0.40 TCGA-GN-A263-01 19 59060795 59060795 C T TRIM28 Missense_Mutation p.A587V 0.22 tolerated(0.39) benign(0.012) TCGA-GN-A263-01 19 7671263 7671263 T A CAMSAP3 Missense_Mutation p.L170H 0.16 deleterious(0) probably_damaging(0.992) TCGA-GN-A263-01 19 7676798 7676798 C T CAMSAP3 Silent p.L500L 0.42 TCGA-GN-A263-01 19 831808 831808 C T AZU1 Silent p.F229F 0.16 TCGA-GN-A263-01 19 8969281 8969281 C T MUC16 Missense_Mutation p.D14355N 0.26 benign(0.399) TCGA-GN-A263-01 1 101705126 101705126 C T S1PR1 Missense_Mutation p.P196S 0.25 deleterious(0) probably_damaging(0.994) TCGA-GN-A263-01 1 101705127 101705127 C T S1PR1 Missense_Mutation p.P196L 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-GN-A263-01 1 102269775 102269775 G A OLFM3 3'UTR 0.31 TCGA-GN-A263-01 1 1120465 1120465 G A TTLL10 Silent p.K459K 0.21 TCGA-GN-A263-01 1 118571014 118571014 C T SPAG17 Missense_Mutation p.E1205K 0.23 deleterious(0.01) possibly_damaging(0.705) TCGA-GN-A263-01 1 12267127 12267127 G A TNFRSF1B 3'UTR 0.20 TCGA-GN-A263-01 1 12438576 12438576 C T VPS13D Missense_Mutation p.S3671L 0.22 benign(0) TCGA-GN-A263-01 1 12837191 12837191 G A PRAMEF12 Missense_Mutation p.E301K 0.21 tolerated(0.06) benign(0.026) TCGA-GN-A263-01 1 151261703 151261703 C T ZNF687 Silent p.A809A 0.18 TCGA-GN-A263-01 1 151261704 151261704 C T ZNF687 Missense_Mutation p.H810Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-GN-A263-01 1 151751698 151751698 G A TDRKH Missense_Mutation p.R148C 0.26 deleterious(0) probably_damaging(0.99) TCGA-GN-A263-01 1 152059214 152059214 G A TCHHL1 Missense_Mutation p.P315L 0.22 tolerated(0.07) benign(0.014) TCGA-GN-A263-01 1 155166937 155166937 G A THBS3 Missense_Mutation p.P856L 0.24 tolerated(0.13) benign(0.011) TCGA-GN-A263-01 1 157670305 157670305 G A FCRL3 5'UTR 0.24 TCGA-GN-A263-01 1 158747395 158747395 C T OR6N2 Missense_Mutation p.E11K 0.27 deleterious(0) possibly_damaging(0.873) TCGA-GN-A263-01 1 160171137 160171137 G A CASQ1 Missense_Mutation p.E388K 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A263-01 1 160651006 160651006 G A CD48 Missense_Mutation p.P213L 0.28 tolerated(0.35) benign(0.039) TCGA-GN-A263-01 1 16342188 16342188 G A HSPB7 Missense_Mutation p.P134S 0.32 deleterious(0) probably_damaging(0.992) TCGA-GN-A263-01 1 16386002 16386002 G A FAM131C Silent p.I183I 0.35 TCGA-GN-A263-01 1 16736461 16736461 C T SPATA21 Silent p.G74G 0.13 TCGA-GN-A263-01 1 17531743 17531743 C T PADI1 Silent p.L11L 0.28 TCGA-GN-A263-01 1 175956239 175956239 C T RFWD2 Missense_Mutation p.G658E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 1 17609436 17609436 C T PADI3 Silent p.S619S 0.23 TCGA-GN-A263-01 1 177001974 177001974 G A ASTN1 Silent p.I161I 0.29 TCGA-GN-A263-01 1 17723567 17723567 G A PADI6 Intron 0.21 TCGA-GN-A263-01 1 177249834 177249834 G A BRINP2 Missense_Mutation p.D508N 0.26 deleterious(0) possibly_damaging(0.82) TCGA-GN-A263-01 1 179064332 179064332 G A TOR3A Silent p.R391R 0.23 TCGA-GN-A263-01 1 179521770 179521770 C T NPHS2 Missense_Mutation p.E281K 0.24 deleterious(0) probably_damaging(0.982) TCGA-GN-A263-01 1 180974451 180974451 C T STX6 Missense_Mutation p.E62K 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-GN-A263-01 1 185114617 185114617 A G TRMT1L Silent p.V203V 0.17 TCGA-GN-A263-01 1 186043883 186043883 C T HMCN1 Missense_Mutation p.S2717F 0.23 possibly_damaging(0.639) TCGA-GN-A263-01 1 186413470 186413470 C T PDC Missense_Mutation p.E128K 0.23 deleterious(0.01) benign(0.432) TCGA-GN-A263-01 1 186413597 186413597 C T PDC Silent p.E85E 0.20 TCGA-GN-A263-01 1 18808853 18808853 G A KLHDC7A Missense_Mutation p.E460K 0.25 deleterious(0) benign(0.058) TCGA-GN-A263-01 1 196577363 196577363 C T KCNT2 Missense_Mutation p.G26E 0.20 tolerated_low_confidence(0.11) probably_damaging(0.914) TCGA-GN-A263-01 1 201352246 201352246 C T LAD1 Missense_Mutation p.E448K 0.30 deleterious(0.01) possibly_damaging(0.876) TCGA-GN-A263-01 1 202096983 202096983 C T GPR37L1 Silent p.L249L 0.18 TCGA-GN-A263-01 1 202566006 202566006 G A SYT2 Missense_Mutation p.A380V 0.18 deleterious(0.01) possibly_damaging(0.849) TCGA-GN-A263-01 1 203150322 203150322 C T CHI3L1 Missense_Mutation p.E227K 0.23 tolerated(0.86) benign(0.002) TCGA-GN-A263-01 1 204433138 204433138 A C PIK3C2B Splice_Site p.X437_splice 0.22 TCGA-GN-A263-01 1 2290117 2290117 G A MORN1 Silent p.V261V 0.28 TCGA-GN-A263-01 1 229567343 229567343 G A ACTA1 Missense_Mutation p.S346F 0.27 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-GN-A263-01 1 241797947 241797947 G A CHML Silent p.P374P 0.20 TCGA-GN-A263-01 1 243504406 243504406 G A SDCCAG8 Silent p.K429K 0.17 TCGA-GN-A263-01 1 247737544 247737544 G A GCSAML Missense_Mutation p.E90K 0.24 deleterious(0) probably_damaging(0.986) TCGA-GN-A263-01 1 248308467 248308467 G A OR2M5 Silent p.Q6Q 0.22 TCGA-GN-A263-01 1 26694985 26694985 G A ZNF683 Silent p.S26S 0.27 TCGA-GN-A263-01 1 27736342 27736342 G A WASF2 Missense_Mutation p.P395S 0.26 tolerated(0.49) unknown(0) TCGA-GN-A263-01 1 27736343 27736343 G A WASF2 Silent p.P394P 0.27 TCGA-GN-A263-01 1 28477362 28477362 C T PTAFR Silent p.V57V 0.27 TCGA-GN-A263-01 1 37271852 37271852 C T GRIK3 Missense_Mutation p.E723K 0.28 tolerated(0.19) benign(0.054) TCGA-GN-A263-01 1 47395946 47395946 C T CYP4A11 Silent p.L467L 0.28 TCGA-GN-A263-01 1 52253530 52253530 C T OSBPL9 3'UTR 0.32 TCGA-GN-A263-01 1 55063063 55063063 G A ACOT11 Missense_Mutation p.E247K 0.16 deleterious(0.01) possibly_damaging(0.734) TCGA-GN-A263-01 1 55074804 55074804 T A ACOT11 Intron 0.31 TCGA-GN-A263-01 1 55253402 55253402 C T TTC22 Missense_Mutation p.E241K 0.30 tolerated(0.3) benign(0.003) TCGA-GN-A263-01 1 57422541 57422541 C T C8B Missense_Mutation p.E98K 0.25 tolerated(0.08) benign(0.382) TCGA-GN-A263-01 1 57489283 57489283 G A DAB1 Silent p.I272I 0.26 TCGA-GN-A263-01 1 60370661 60370661 G A CYP2J2 Missense_Mutation p.S358F 0.24 deleterious(0.04) benign(0.159) TCGA-GN-A263-01 1 61798192 61798192 G A NFIA Missense_Mutation p.G257S 0.23 tolerated(0.52) benign(0.09) TCGA-GN-A263-01 1 62579969 62579969 G A INADL Intron 0.42 TCGA-GN-A263-01 1 67161104 67161104 C T SGIP1 Intron 0.36 TCGA-GN-A263-01 1 70820748 70820748 G A HHLA3 Silent p.R38R 0.16 TCGA-GN-A263-01 1 71437316 71437316 C T PTGER3 Intron 0.24 TCGA-GN-A263-01 1 74834725 74834725 C T FPGT-TNNI3K Silent p.L561L 0.24 TCGA-GN-A263-01 1 905948 905948 C T PLEKHN1 Silent p.F126F 0.20 TCGA-GN-A263-01 1 906293 906293 C T PLEKHN1 Silent p.P173P 0.24 TCGA-GN-A263-01 1 9324543 9324543 C T H6PD Missense_Mutation p.A664V 0.12 tolerated(0.68) benign(0.013) TCGA-GN-A263-01 1 93724338 93724338 G A CCDC18 Missense_Mutation p.G1247R 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 20 10653613 10653613 G A JAG1 Silent p.S41S 0.10 TCGA-GN-A263-01 20 10653614 10653614 G A JAG1 Missense_Mutation p.S41F 0.12 deleterious(0.01) benign(0.133) TCGA-GN-A263-01 20 29956450 29956450 G A DEFB118 5'UTR 0.26 TCGA-GN-A263-01 20 31389145 31389145 G A DNMT3B Silent p.E686E 0.28 TCGA-GN-A263-01 20 33999785 33999785 C T UQCC1 5'UTR 0.28 TCGA-GN-A263-01 20 35242141 35242141 C T SLA2 3'UTR 0.42 TCGA-GN-A263-01 20 39990330 39990330 C T EMILIN3 Missense_Mutation p.E627K 0.31 tolerated(0.08) possibly_damaging(0.905) TCGA-GN-A263-01 20 44675062 44675062 C T SLC12A5 Nonsense_Mutation p.R615* 0.22 TCGA-GN-A263-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.23 deleterious(0.01) probably_damaging(1) TCGA-GN-A263-01 20 57768629 57768629 C T ZNF831 Missense_Mutation p.S852F 0.26 deleterious(0.03) benign(0.07) TCGA-GN-A263-01 20 57769536 57769536 C T ZNF831 Silent p.S1154S 0.30 TCGA-GN-A263-01 20 60574056 60574056 G A TAF4 Silent p.L966L 0.12 TCGA-GN-A263-01 20 62126410 62126410 G A EEF1A2 Silent p.F123F 0.27 TCGA-GN-A263-01 21 18966407 18966407 G A BTG3 3'UTR 0.23 TCGA-GN-A263-01 21 31973485 31973485 G A KRTAP22-1 Missense_Mutation p.G16R 0.30 unknown(0) TCGA-GN-A263-01 21 43846841 43846841 C T UBASH3A Missense_Mutation p.S361F 0.26 deleterious(0.01) possibly_damaging(0.541) TCGA-GN-A263-01 21 44838407 44838407 G A SIK1 Missense_Mutation p.P493S 0.26 tolerated(0.77) benign(0.003) TCGA-GN-A263-01 21 44839834 44839834 G A SIK1 Missense_Mutation p.L342F 0.19 deleterious(0.02) possibly_damaging(0.522) TCGA-GN-A263-01 22 21329027 21329027 G A AIFM3 Silent p.R214R 0.34 TCGA-GN-A263-01 22 22892343 22892343 G A PRAME Missense_Mutation p.S253F 0.25 deleterious(0) possibly_damaging(0.562) TCGA-GN-A263-01 22 25270513 25270513 C T SGSM1 Missense_Mutation p.L475F 0.38 tolerated(0.11) benign(0) TCGA-GN-A263-01 22 25603217 25603217 G A CRYBB3 3'UTR 0.20 TCGA-GN-A263-01 22 29921844 29921844 G A THOC5 Silent p.I386I 0.26 TCGA-GN-A263-01 22 30367026 30367026 C T MTMR3 5'UTR 0.28 TCGA-GN-A263-01 22 30660099 30660099 G A OSM Missense_Mutation p.P178S 0.11 tolerated(0.06) probably_damaging(0.976) TCGA-GN-A263-01 22 37906324 37906324 C T CARD10 Silent p.K268K 0.32 TCGA-GN-A263-01 22 38474436 38474436 C T SLC16A8 Missense_Mutation p.E492K 0.31 tolerated(0.18) probably_damaging(0.956) TCGA-GN-A263-01 22 39117864 39117864 C T GTPBP1 Silent p.L318L 0.12 TCGA-GN-A263-01 22 39770497 39770497 C T SYNGR1 Silent p.F92F 0.29 TCGA-GN-A263-01 22 44585106 44585106 G A PARVG Silent p.E120E 0.14 TCGA-GN-A263-01 22 44585107 44585107 G A PARVG Missense_Mutation p.E121K 0.14 tolerated(0.14) benign(0.038) TCGA-GN-A263-01 2 101604640 101604640 C T NPAS2 Missense_Mutation p.P577S 0.25 tolerated(0.43) benign(0.004) TCGA-GN-A263-01 2 101604641 101604641 C T NPAS2 Missense_Mutation p.P577L 0.25 tolerated(0.1) benign(0.075) TCGA-GN-A263-01 2 102851499 102851499 G A IL1RL2 Silent p.G480G 0.24 TCGA-GN-A263-01 2 108488404 108488404 C T RGPD4 Missense_Mutation p.S1315L 0.20 deleterious(0) possibly_damaging(0.813) TCGA-GN-A263-01 2 113675270 113675270 G A IL37 Silent p.P108P 0.25 TCGA-GN-A263-01 2 113832373 113832373 G A IL1F10 Silent p.G64G 0.28 TCGA-GN-A263-01 2 120221710 120221710 C T SCTR Missense_Mutation p.D209N 0.23 tolerated(0.57) benign(0.01) TCGA-GN-A263-01 2 135093810 135093810 T C MGAT5 Missense_Mutation p.L199S 0.30 deleterious(0) probably_damaging(0.95) TCGA-GN-A263-01 2 135738822 135738822 G A MAP3K19 Silent p.F1163F 0.26 TCGA-GN-A263-01 2 135988399 135988399 C T ZRANB3 Silent p.R546R 0.16 TCGA-GN-A263-01 2 136479539 136479539 C T R3HDM1 Missense_Mutation p.P941L 0.19 deleterious(0.03) benign(0.027) TCGA-GN-A263-01 2 136566094 136566094 C T LCT Missense_Mutation p.G1275R 0.27 deleterious(0) probably_damaging(0.987) TCGA-GN-A263-01 2 137814720 137814720 G A THSD7B Silent p.S290S 0.27 TCGA-GN-A263-01 2 141079576 141079576 C T LRP1B Missense_Mutation p.G4199E 0.31 probably_damaging(0.931) TCGA-GN-A263-01 2 141819768 141819768 C T LRP1B Missense_Mutation p.R363K 0.24 benign(0.067) TCGA-GN-A263-01 2 154800952 154800952 G A GALNT13 5'UTR 0.30 TCGA-GN-A263-01 2 155099242 155099242 G A GALNT13 Silent p.V170V 0.29 TCGA-GN-A263-01 2 167992545 167992545 G A XIRP2 Missense_Mutation p.E179K 0.22 benign(0.033) TCGA-GN-A263-01 2 168100347 168100347 A G XIRP2 Silent p.Q815Q 0.27 TCGA-GN-A263-01 2 179399545 179399545 G C TTN Missense_Mutation p.H33933D 0.19 TCGA-GN-A263-01 2 179403769 179403769 C T TTN Missense_Mutation p.D32965N 0.25 TCGA-GN-A263-01 2 1795710 1795710 G A MYT1L Missense_Mutation p.R1162C 0.31 tolerated(0.16) possibly_damaging(0.864) TCGA-GN-A263-01 2 179610831 179610831 C T TTN Intron 0.25 TCGA-GN-A263-01 2 179656915 179656915 C T TTN Missense_Mutation p.E516K 0.20 TCGA-GN-A263-01 2 187703825 187703825 G A ZSWIM2 Missense_Mutation p.P119S 0.20 tolerated(0.08) possibly_damaging(0.548) TCGA-GN-A263-01 2 196774837 196774837 C T DNAH7 Missense_Mutation p.D1340N 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 2 197185159 197185159 G A HECW2 Nonsense_Mutation p.Q297* 0.28 TCGA-GN-A263-01 2 202131505 202131505 C T CASP8 Missense_Mutation p.S158F 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-GN-A263-01 2 204045118 204045118 G A NBEAL1 Missense_Mutation p.D2131N 0.25 deleterious(0) probably_damaging(0.996) TCGA-GN-A263-01 2 206921399 206921399 C T INO80D Missense_Mutation p.G163R 0.26 deleterious(0.04) probably_damaging(0.939) TCGA-GN-A263-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-GN-A263-01 2 220344734 220344734 G T SPEG Silent p.R1738R 0.23 TCGA-GN-A263-01 2 220344735 220344735 A C SPEG Missense_Mutation p.I1739L 0.22 benign(0.019) TCGA-GN-A263-01 2 224462908 224462908 A G SCG2 Silent p.L365L 0.18 TCGA-GN-A263-01 2 226447216 226447216 G A NYAP2 Silent p.T361T 0.43 TCGA-GN-A263-01 2 227886845 227886845 G A COL4A4 Missense_Mutation p.P1379S 0.11 unknown(0) TCGA-GN-A263-01 2 227886846 227886846 G A COL4A4 Silent p.I1378I 0.11 TCGA-GN-A263-01 2 227915811 227915811 C T COL4A4 Missense_Mutation p.G1011E 0.25 unknown(0) TCGA-GN-A263-01 2 227945185 227945185 C T COL4A4 Missense_Mutation p.G593R 0.21 probably_damaging(0.979) TCGA-GN-A263-01 2 228884007 228884007 C T SPHKAP Missense_Mutation p.M521I 0.20 tolerated(0.23) benign(0.027) TCGA-GN-A263-01 2 233272069 233272069 C T ALPPL2 Silent p.T86T 0.21 TCGA-GN-A263-01 2 238253335 238253335 C T COL6A3 Silent p.G2442G 0.23 TCGA-GN-A263-01 2 239161888 239161888 G A PER2 Missense_Mutation p.P926S 0.24 tolerated(0.09) benign(0.009) TCGA-GN-A263-01 2 24438982 24438982 A G ITSN2 Missense_Mutation p.L1309P 0.20 deleterious(0) unknown(0) TCGA-GN-A263-01 2 25141736 25141736 G A ADCY3 Missense_Mutation p.R41W 0.20 tolerated(0.07) possibly_damaging(0.858) TCGA-GN-A263-01 2 25141737 25141737 G A ADCY3 Silent p.V40V 0.20 TCGA-GN-A263-01 2 27460710 27460710 T A CAD Missense_Mutation p.F1563Y 0.35 tolerated(0.29) benign(0.029) TCGA-GN-A263-01 2 28467657 28467657 G A BRE Missense_Mutation p.E288K 0.36 deleterious(0.05) probably_damaging(0.997) TCGA-GN-A263-01 2 28748147 28748147 G A PLB1 Missense_Mutation p.G86E 0.28 deleterious(0.05) benign(0.013) TCGA-GN-A263-01 2 3749980 3749980 G A ALLC Missense_Mutation p.D335N 0.32 tolerated(0.27) benign(0.032) TCGA-GN-A263-01 2 39998751 39998751 G A THUMPD2 Silent p.F52F 0.21 TCGA-GN-A263-01 2 55808763 55808763 A T SMEK2 Silent p.V435V 0.27 TCGA-GN-A263-01 2 71778184 71778184 G A DYSF Silent p.L530L 0.26 TCGA-GN-A263-01 2 74589260 74589260 G A DCTN1 Silent p.V1206V 0.20 TCGA-GN-A263-01 2 79254185 79254185 G A REG3G Missense_Mutation p.G74E 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 2 85782649 85782649 G A GGCX Missense_Mutation p.S228F 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 2 96523137 96523137 C T ANKRD36C Missense_Mutation p.A361T 0.24 tolerated(0.12) benign(0.065) TCGA-GN-A263-01 3 101572532 101572532 C T NFKBIZ Missense_Mutation p.H388Y 0.20 tolerated(0.13) benign(0.105) TCGA-GN-A263-01 3 108288297 108288297 G A KIAA1524 Missense_Mutation p.P351L 0.24 deleterious(0) possibly_damaging(0.875) TCGA-GN-A263-01 3 109049279 109049279 G A DPPA4 Intron 0.37 TCGA-GN-A263-01 3 111263901 111263901 G A CD96 Missense_Mutation p.E24K 0.17 tolerated(0.13) benign(0.393) TCGA-GN-A263-01 3 113379677 113379677 C T KIAA2018 Silent p.K284K 0.28 TCGA-GN-A263-01 3 121448123 121448123 G A GOLGB1 Missense_Mutation p.T105I 0.29 possibly_damaging(0.662) TCGA-GN-A263-01 3 121647858 121647858 G A SLC15A2 Silent p.L457L 0.23 TCGA-GN-A263-01 3 124103806 124103806 C T KALRN Nonsense_Mutation p.Q627* 0.29 TCGA-GN-A263-01 3 126137359 126137359 C T CCDC37 Silent p.F159F 0.21 TCGA-GN-A263-01 3 129140317 129140317 C T EFCAB12 Missense_Mutation p.E127K 0.26 tolerated(0.38) benign(0.004) TCGA-GN-A263-01 3 130884308 130884308 G A NEK11 Missense_Mutation p.R374Q 0.20 tolerated(0.06) benign(0.052) TCGA-GN-A263-01 3 133374154 133374157 AGGT GAA TOPBP1 Frame_Shift_Del p.H240Lfs*23 0.20 TCGA-GN-A263-01 3 133670117 133670117 C T SLCO2A1 Missense_Mutation p.A266T 0.30 tolerated(0.14) benign(0.375) TCGA-GN-A263-01 3 138291762 138291762 G A CEP70 Missense_Mutation p.P3L 0.23 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-GN-A263-01 3 140979071 140979071 C T ACPL2 Silent p.A18A 0.20 TCGA-GN-A263-01 3 141011495 141011495 C T ACPL2 Silent p.S297S 0.18 TCGA-GN-A263-01 3 150661642 150661642 C T CLRN1 Intron 0.24 TCGA-GN-A263-01 3 154832934 154832934 C T MME Silent p.V116V 0.23 TCGA-GN-A263-01 3 16217062 16217062 G A GALNT15 Nonsense_Mutation p.W135* 0.27 TCGA-GN-A263-01 3 169664155 169664155 G A RP11-379K17.4 RNA 0.35 TCGA-GN-A263-01 3 175520981 175520981 G A NAALADL2 Missense_Mutation p.G793E 0.33 tolerated(0.22) benign(0.024) TCGA-GN-A263-01 3 189526267 189526267 C T TP63 Silent p.F177F 0.24 TCGA-GN-A263-01 3 193151704 193151704 C T ATP13A4 Silent p.E924E 0.10 TCGA-GN-A263-01 3 193153532 193153532 C T ATP13A4 Missense_Mutation p.E892K 0.23 deleterious(0) possibly_damaging(0.624) TCGA-GN-A263-01 3 27346402 27346402 C T NEK10 Silent p.K288K 0.19 TCGA-GN-A263-01 3 31670893 31670893 G A STT3B Missense_Mutation p.G726E 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-GN-A263-01 3 31710258 31710258 C T OSBPL10 Missense_Mutation p.E658K 0.11 deleterious(0.05) probably_damaging(0.923) TCGA-GN-A263-01 3 33171484 33171484 C T CRTAP Missense_Mutation p.P283S 0.22 tolerated(0.06) benign(0.439) TCGA-GN-A263-01 3 33418781 33418781 C T FBXL2 Nonsense_Mutation p.R269* 0.32 TCGA-GN-A263-01 3 37366132 37366132 G A GOLGA4 Missense_Mutation p.G941R 0.24 possibly_damaging(0.681) TCGA-GN-A263-01 3 38169329 38169329 A G ACAA1 Missense_Mutation p.F192L 0.28 tolerated(0.06) possibly_damaging(0.518) TCGA-GN-A263-01 3 38347620 38347620 G A SLC22A14 Missense_Mutation p.E35K 0.22 tolerated(0.1) benign(0.015) TCGA-GN-A263-01 3 38835370 38835370 C T SCN10A Silent p.Q44Q 0.24 TCGA-GN-A263-01 3 38888526 38888526 G A SCN11A Missense_Mutation p.R1679C 0.20 deleterious(0) probably_damaging(0.923) TCGA-GN-A263-01 3 39307989 39307989 G A CX3CR1 Silent p.F36F 0.25 TCGA-GN-A263-01 3 42244110 42244110 C T TRAK1 Missense_Mutation p.S537F 0.20 tolerated(0.55) probably_damaging(0.999) TCGA-GN-A263-01 3 49753555 49753555 C T RNF123 Silent p.N1120N 0.19 TCGA-GN-A263-01 3 49753556 49753556 C T RNF123 Missense_Mutation p.R1121W 0.19 deleterious(0) probably_damaging(0.941) TCGA-GN-A263-01 3 52474028 52474028 G A SEMA3G Silent p.A410A 0.24 TCGA-GN-A263-01 3 58129301 58129301 C A FLNB Missense_Mutation p.H1827N 0.10 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 3 65367622 65367622 G A MAGI1 Silent p.V877V 0.21 TCGA-GN-A263-01 3 8667281 8667281 C T SSUH2 Missense_Mutation p.E274K 0.23 tolerated(0.3) possibly_damaging(0.782) TCGA-GN-A263-01 3 9839372 9839372 C T ARPC4-TTLL3 Silent p.A11A 0.26 TCGA-GN-A263-01 4 104070357 104070357 C T CENPE Missense_Mutation p.R1202K 0.21 benign(0.022) TCGA-GN-A263-01 4 128689940 128689940 C T SLC25A31 Missense_Mutation p.L223F 0.25 tolerated(0.73) possibly_damaging(0.679) TCGA-GN-A263-01 4 130032978 130032978 C T C4orf33 3'UTR 0.22 TCGA-GN-A263-01 4 15614011 15614011 G A FBXL5 Missense_Mutation p.P626L 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 4 15614012 15614012 G A FBXL5 Missense_Mutation p.P626S 0.28 tolerated(0.1) probably_damaging(1) TCGA-GN-A263-01 4 158057783 158057783 C T GLRB Missense_Mutation p.H154Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-GN-A263-01 4 170028067 170028067 G A SH3RF1 Missense_Mutation p.P810L 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 4 177100723 177100723 C T WDR17 Missense_Mutation p.P1321L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A263-01 4 187179291 187179291 C T KLKB1 Silent p.V614V 0.23 TCGA-GN-A263-01 4 188924208 188924208 C T ZFP42 Nonsense_Mutation p.Q83* 0.21 TCGA-GN-A263-01 4 189063519 189063519 G A TRIML1 Silent p.E206E 0.25 TCGA-GN-A263-01 4 21699079 21699079 C T KCNIP4 Intron 0.29 TCGA-GN-A263-01 4 4322395 4322395 C T ZBTB49 Silent p.L550L 0.21 TCGA-GN-A263-01 4 46979555 46979555 C T GABRA4 Missense_Mutation p.M122I 0.16 tolerated(0.11) benign(0.062) TCGA-GN-A263-01 4 49046821 49046821 C T CWH43 Missense_Mutation p.H608Y 0.18 tolerated(1) benign(0.009) TCGA-GN-A263-01 4 68784915 68784915 C T TMPRSS11A Missense_Mutation p.G246E 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 4 68829130 68829130 G A TMPRSS11A 5'UTR 0.15 TCGA-GN-A263-01 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.25 TCGA-GN-A263-01 4 71347687 71347687 G A MUC7 3'UTR 0.29 TCGA-GN-A263-01 4 72425854 72425854 C T SLC4A4 Silent p.F994F 0.23 TCGA-GN-A263-01 4 74853797 74853797 G A PPBP Silent p.T8T 0.25 TCGA-GN-A263-01 4 76927422 76927422 G A CXCL9 Missense_Mutation p.P24S 0.23 tolerated(0.24) benign(0.084) TCGA-GN-A263-01 4 80329214 80329214 G A GK2 Silent p.F47F 0.25 TCGA-GN-A263-01 4 81207861 81207861 C T FGF5 3'UTR 0.24 TCGA-GN-A263-01 4 90170463 90170463 G A GPRIN3 Missense_Mutation p.P267S 0.23 tolerated(0.52) benign(0.022) TCGA-GN-A263-01 5 1243795 1243795 C T SLC6A18 Silent p.F419F 0.25 TCGA-GN-A263-01 5 127866296 127866296 G A FBN2 Missense_Mutation p.S143L 0.37 tolerated(0.22) benign(0) TCGA-GN-A263-01 5 135610477 135610477 C T TRPC7 Missense_Mutation p.E338K 0.55 deleterious(0.01) benign(0.21) TCGA-GN-A263-01 5 13850790 13850790 C T DNAH5 Silent p.Q1695Q 0.20 TCGA-GN-A263-01 5 13885212 13885212 C T DNAH5 Missense_Mutation p.E957K 0.28 benign(0.305) TCGA-GN-A263-01 5 13885338 13885338 C T DNAH5 Splice_Site p.X915_splice 0.27 TCGA-GN-A263-01 5 140594448 140594448 G A PCDHB13 Silent p.Q251Q 0.36 TCGA-GN-A263-01 5 140595018 140595018 C T PCDHB13 Silent p.I441I 0.44 TCGA-GN-A263-01 5 141008874 141008874 C T HDAC3 Splice_Site p.X159_splice 0.20 TCGA-GN-A263-01 5 150946893 150946893 T C FAT2 Missense_Mutation p.R534G 0.28 benign(0.375) TCGA-GN-A263-01 5 172744831 172744831 C T STC2 3'UTR 0.27 TCGA-GN-A263-01 5 177022441 177022441 C T TMED9 3'UTR 0.38 TCGA-GN-A263-01 5 31297434 31297434 G A CDH6 Missense_Mutation p.D188N 0.23 deleterious(0) probably_damaging(0.998) TCGA-GN-A263-01 5 31299677 31299677 G A CDH6 Silent p.G250G 0.26 TCGA-GN-A263-01 5 33576648 33576648 T G ADAMTS12 Missense_Mutation p.E1161D 0.15 tolerated(0.14) benign(0.025) TCGA-GN-A263-01 5 35871316 35871316 G A IL7R Splice_Site p.X179_splice 0.34 TCGA-GN-A263-01 5 38431313 38431313 G A EGFLAM Missense_Mutation p.E697K 0.25 tolerated(0.07) possibly_damaging(0.641) TCGA-GN-A263-01 5 5303501 5303501 C T ADAMTS16 Silent p.C970C 0.26 TCGA-GN-A263-01 5 54420693 54420693 C T CDC20B Missense_Mutation p.D385N 0.30 deleterious(0.05) possibly_damaging(0.777) TCGA-GN-A263-01 5 90070010 90070010 C T GPR98 Missense_Mutation p.S4098F 0.36 benign(0.204) TCGA-GN-A263-01 6 100382356 100382356 G A MCHR2 Missense_Mutation p.P209S 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 6 126359912 126359912 C T TRMT11 Missense_Mutation p.S441F 0.23 tolerated(0.07) benign(0.014) TCGA-GN-A263-01 6 151907184 151907184 G A CCDC170 Missense_Mutation p.G418E 0.16 tolerated(0.11) possibly_damaging(0.899) TCGA-GN-A263-01 6 151939261 151939261 C T CCDC170 Silent p.G709G 0.22 TCGA-GN-A263-01 6 158923521 158923521 C T TULP4 Silent p.T942T 0.32 TCGA-GN-A263-01 6 161020674 161020674 G A LPA Missense_Mutation p.P1049S 0.22 deleterious(0.02) probably_damaging(0.971) TCGA-GN-A263-01 6 170594737 170594737 G A DLL1 Missense_Mutation p.P261L 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-GN-A263-01 6 24178596 24178596 C T DCDC2 Missense_Mutation p.E430K 0.28 deleterious_low_confidence(0.04) benign(0.014) TCGA-GN-A263-01 6 24532357 24532357 G A ALDH5A1 Missense_Mutation p.E465K 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 6 28217542 28217542 G A ZKSCAN4 Missense_Mutation p.S165F 0.23 deleterious(0) possibly_damaging(0.815) TCGA-GN-A263-01 6 29430419 29430419 G A OR2H1 Silent p.R291R 0.19 TCGA-GN-A263-01 6 30577733 30577733 C T PPP1R10 Splice_Site 0.30 TCGA-GN-A263-01 6 33287991 33287991 C T DAXX Missense_Mutation p.G421E 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A263-01 6 33694609 33694609 C T IP6K3 Missense_Mutation p.G163E 0.22 tolerated(0.06) benign(0.022) TCGA-GN-A263-01 6 35088211 35088211 G A TCP11 Missense_Mutation p.P323S 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-GN-A263-01 6 35477481 35477481 C T TULP1 Silent p.A216A 0.22 TCGA-GN-A263-01 6 38709588 38709588 C T DNAH8 Silent p.I189I 0.26 TCGA-GN-A263-01 6 42796660 42796660 C T GLTSCR1L Missense_Mutation p.P197S 0.29 tolerated(0.1) probably_damaging(0.929) TCGA-GN-A263-01 6 43749694 43749694 C T VEGFA Missense_Mutation p.P363S 0.30 deleterious(0.02) benign(0.17) TCGA-GN-A263-01 6 45514845 45514845 C T RUNX2 Missense_Mutation p.P457S 0.29 tolerated(1) possibly_damaging(0.801) TCGA-GN-A263-01 6 46787310 46787310 C T MEP1A Missense_Mutation p.S142F 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 6 49604553 49604553 G A RHAG 5'Flank 0.22 TCGA-GN-A263-01 6 51484319 51484319 C T PKHD1 Splice_Site p.X3929_splice 0.21 TCGA-GN-A263-01 6 6222389 6222389 C T F13A1 Missense_Mutation p.G330E 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 6 6222390 6222390 C T F13A1 Missense_Mutation p.G330R 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 6 70966489 70966489 C T COL9A1 Silent p.Q495Q 0.18 TCGA-GN-A263-01 6 89855983 89855983 C T PM20D2 Silent p.A40A 0.38 TCGA-GN-A263-01 6 90097304 90097304 C G RRAGD Missense_Mutation p.D52H 0.22 tolerated(0.1) benign(0.358) TCGA-GN-A263-01 6 90097305 90097305 C T RRAGD Silent p.L51L 0.22 TCGA-GN-A263-01 7 100684970 100684970 G A MUC17 Missense_Mutation p.D3425N 0.25 benign(0.008) TCGA-GN-A263-01 7 100686264 100686264 C T MUC17 Missense_Mutation p.S3856F 0.14 possibly_damaging(0.485) TCGA-GN-A263-01 7 103275910 103275910 G A RELN Silent p.L809L 0.29 TCGA-GN-A263-01 7 114298171 114298171 C T FOXP2 Silent p.S464S 0.26 TCGA-GN-A263-01 7 123514836 123514836 G A HYAL4 Missense_Mutation p.G326R 0.16 deleterious(0.03) probably_damaging(1) TCGA-GN-A263-01 7 131925877 131925877 C T PLXNA4 Missense_Mutation p.E518K 0.23 tolerated(0.18) benign(0.145) TCGA-GN-A263-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-GN-A263-01 7 142131892 142131892 G A TRBV5-6 5'UTR 0.22 TCGA-GN-A263-01 7 142197691 142197691 C T TRBV11-2 RNA 0.20 TCGA-GN-A263-01 7 142641823 142641823 C T KEL Missense_Mutation p.M440I 0.26 tolerated(0.08) benign(0.081) TCGA-GN-A263-01 7 143175339 143175339 G A TAS2R41 Missense_Mutation p.R125K 0.30 tolerated(0.48) possibly_damaging(0.669) TCGA-GN-A263-01 7 149430494 149430494 C T KRBA1 Silent p.L816L 0.35 TCGA-GN-A263-01 7 154863008 154863008 G A HTR5A-AS1 Silent p.A2A 0.27 TCGA-GN-A263-01 7 21675610 21675610 G A DNAH11 Missense_Mutation p.R1546Q 0.24 benign(0.286) TCGA-GN-A263-01 7 36588237 36588237 C T AOAH Missense_Mutation p.G372R 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 40172752 40172752 C T MPLKIP Nonsense_Mutation p.W149* 0.24 TCGA-GN-A263-01 7 44266118 44266118 G A CAMK2B Missense_Mutation p.P532S 0.23 tolerated_low_confidence(0.68) benign(0.001) TCGA-GN-A263-01 7 44578710 44578710 G A NPC1L1 Missense_Mutation p.P429L 0.19 deleterious(0.03) benign(0.15) TCGA-GN-A263-01 7 48273685 48273685 C T ABCA13 Silent p.S278S 0.33 TCGA-GN-A263-01 7 48312792 48312792 C T ABCA13 Missense_Mutation p.H1177Y 0.31 benign(0.006) TCGA-GN-A263-01 7 48314850 48314850 C T ABCA13 Missense_Mutation p.H1863Y 0.27 probably_damaging(0.925) TCGA-GN-A263-01 7 5269331 5269331 G A WIPI2 Missense_Mutation p.G405E 0.17 deleterious(0.03) benign(0.017) TCGA-GN-A263-01 7 65425996 65425996 G A GUSB Missense_Mutation p.P615L 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 65425997 65425997 G A GUSB Missense_Mutation p.P615S 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 73011947 73011947 G A MLXIPL Missense_Mutation p.P390S 0.27 tolerated(0.45) possibly_damaging(0.601) TCGA-GN-A263-01 7 73151395 73151395 C T ABHD11 Missense_Mutation p.D227N 0.33 tolerated(0.56) benign(0.067) TCGA-GN-A263-01 7 73653299 73653299 G A RFC2 Missense_Mutation p.S238F 0.22 deleterious(0) probably_damaging(0.959) TCGA-GN-A263-01 7 7546791 7546791 C T COL28A1 Missense_Mutation p.G310E 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 76828570 76828570 T C FGL2 Missense_Mutation p.T181A 0.25 deleterious(0.04) possibly_damaging(0.546) TCGA-GN-A263-01 7 82430905 82430905 C T PCLO Missense_Mutation p.G4979E 0.27 unknown(0) TCGA-GN-A263-01 7 82582045 82582045 C T PCLO Missense_Mutation p.D2742N 0.29 unknown(0) TCGA-GN-A263-01 7 87214929 87214929 C T ABCB1 Missense_Mutation p.G62E 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 87214930 87214930 C T ABCB1 Missense_Mutation p.G62R 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 7 92970742 92970742 G C CCDC132 Missense_Mutation p.V688L 0.22 tolerated(0.74) benign(0.001) TCGA-GN-A263-01 7 94174935 94174935 C T CASD1 Missense_Mutation p.P519S 0.09 deleterious(0) probably_damaging(1) TCGA-GN-A263-01 8 101020705 101020705 T C RGS22 Silent p.P753P 0.33 TCGA-GN-A263-01 8 125132156 125132156 G A FER1L6 3'UTR 0.29 TCGA-GN-A263-01 8 125132157 125132157 G A FER1L6 3'UTR 0.30 TCGA-GN-A263-01 8 132982757 132982757 G A EFR3A Silent p.L342L 0.24 TCGA-GN-A263-01 8 132996523 132996523 C T EFR3A Silent p.L571L 0.23 TCGA-GN-A263-01 8 143565392 143565392 G A BAI1 Missense_Mutation p.E729K 0.18 deleterious(0) benign(0) TCGA-GN-A263-01 8 144463809 144463809 G T RHPN1 Missense_Mutation p.G519V 0.14 deleterious(0.05) probably_damaging(0.961) TCGA-GN-A263-01 8 144940435 144940435 G A EPPK1 Silent p.L2329L 0.04 TCGA-GN-A263-01 8 144991362 144991362 G A PLEC Silent p.I4346I 0.18 TCGA-GN-A263-01 8 17198909 17198909 C T MTMR7 Missense_Mutation p.G232E 0.26 tolerated(0.1) benign(0.012) TCGA-GN-A263-01 8 23299548 23299548 G A ENTPD4 Silent p.V233V 0.22 TCGA-GN-A263-01 8 24192998 24192998 G A ADAM28 Missense_Mutation p.E471K 0.21 deleterious(0) probably_damaging(0.997) TCGA-GN-A263-01 8 35579852 35579852 C T UNC5D Silent p.V414V 0.24 TCGA-GN-A263-01 8 37729993 37729993 G A RAB11FIP1 Missense_Mutation p.P776L 0.18 tolerated(0.18) benign(0.058) TCGA-GN-A263-01 8 39502860 39502860 C T ADAM18 Missense_Mutation p.P305S 0.22 tolerated(0.19) benign(0.153) TCGA-GN-A263-01 8 52321683 52321683 G A PXDNL Missense_Mutation p.S834F 0.21 deleterious(0.01) possibly_damaging(0.811) TCGA-GN-A263-01 8 55534763 55534763 C T RP1 Silent p.I234I 0.27 TCGA-GN-A263-01 8 77618821 77618821 G A ZFHX4 Missense_Mutation p.G833E 0.27 probably_damaging(0.969) TCGA-GN-A263-01 8 82670747 82670747 G A CHMP4C Missense_Mutation p.D224N 0.28 deleterious(0.02) benign(0.128) TCGA-GN-A263-01 8 89068426 89068426 G A MMP16 Missense_Mutation p.P435S 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-GN-A263-01 8 92972687 92972687 C T RUNX1T1 Missense_Mutation p.R544Q 0.19 deleterious(0) probably_damaging(0.963) TCGA-GN-A263-01 9 104357047 104357047 G A PPP3R2 Missense_Mutation p.P56S 0.29 deleterious(0) probably_damaging(0.942) TCGA-GN-A263-01 9 104499762 104499762 G A GRIN3A Missense_Mutation p.S167F 0.28 deleterious(0) probably_damaging(0.935) TCGA-GN-A263-01 9 107361685 107361685 C T OR13C5 Missense_Mutation p.E4K 0.36 tolerated(0.5) benign(0.002) TCGA-GN-A263-01 9 137803030 137803030 C T FCN1 Missense_Mutation p.E228K 0.24 deleterious(0.01) possibly_damaging(0.675) TCGA-GN-A263-01 9 138671233 138671233 G A KCNT1 Missense_Mutation p.E920K 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-GN-A263-01 9 140040228 140040228 C T GRIN1 Silent p.S148S 0.17 TCGA-GN-A263-01 9 140043520 140043520 G A GRIN1 Silent p.E231E 0.33 TCGA-GN-A263-01 9 20414337 20414337 G A MLLT3 Silent p.S169S 0.27 TCGA-GN-A263-01 9 37692733 37692733 C T FRMPD1 Missense_Mutation p.S32L 0.31 tolerated(0.18) benign(0.103) TCGA-GN-A263-01 9 80336301 80336301 C G GNAQ Missense_Mutation p.V340L 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-GN-A263-01 X 109694734 109694734 C T RGAG1 Missense_Mutation p.P297S 0.51 tolerated(0.89) benign(0.017) TCGA-GN-A263-01 X 117744354 117744354 G A DOCK11 Silent p.V1023V 0.48 TCGA-GN-A263-01 X 123805602 123805602 C T TENM1 Missense_Mutation p.G367R 0.52 tolerated_low_confidence(0.63) benign(0.258) TCGA-GN-A263-01 X 12937885 12937885 C A TLR8 Missense_Mutation p.F242L 0.47 tolerated(0.32) benign(0.209) TCGA-GN-A263-01 X 12939014 12939014 C T TLR8 Missense_Mutation p.R619C 0.59 deleterious(0.03) benign(0.119) TCGA-GN-A263-01 X 1317494 1317494 C T CRLF2 Missense_Mutation p.E191K 0.18 tolerated(0.2) possibly_damaging(0.693) TCGA-GN-A263-01 X 132160255 132160255 G A USP26 Missense_Mutation p.S665L 0.50 deleterious(0.01) probably_damaging(0.953) TCGA-GN-A263-01 X 1413224 1413224 G A CSF2RA Missense_Mutation p.R217Q 0.23 tolerated(0.33) benign(0.098) TCGA-GN-A263-01 X 1742187 1742187 G A ASMT Silent p.V75V 0.28 TCGA-GN-A263-01 X 18338476 18338476 C T SCML2 Missense_Mutation p.M154I 0.49 deleterious(0.02) benign(0.003) TCGA-GN-A263-01 X 2209550 2209550 G A DHRSX Silent p.I127I 0.23 TCGA-GN-A263-01 X 3539349 3539349 A T PRKX Missense_Mutation p.I275N 0.65 deleterious(0) probably_damaging(0.977) TCGA-GN-A263-01 X 72433164 72433164 C T NAP1L2 Missense_Mutation p.D389N 0.48 deleterious(0) probably_damaging(0.999) TCGA-GN-A264-06 10 124097656 124097656 T G BTBD16 3'UTR 0.55 TCGA-GN-A264-06 10 43317546 43317546 G A BMS1 Missense_Mutation p.D1016N 0.29 tolerated(0.24) benign(0.098) TCGA-GN-A264-06 10 63850684 63850684 C T ARID5B Missense_Mutation p.L488F 0.49 tolerated(0.68) benign(0.383) TCGA-GN-A264-06 11 118455224 118455224 T - ARCN1 Frame_Shift_Del p.G229Efs*7 0.17 TCGA-GN-A264-06 11 46726143 46726143 G C ZNF408 Missense_Mutation p.G298A 0.40 tolerated(0.45) benign(0.003) TCGA-GN-A264-06 11 55563137 55563140 ATGT - OR5D14 Frame_Shift_Del p.Y37Lfs*5 0.73 TCGA-GN-A264-06 11 6703288 6703288 A G MRPL17 3'UTR 0.44 TCGA-GN-A264-06 11 71293396 71293396 G - KRTAP5-11 3'UTR 0.32 TCGA-GN-A264-06 12 57911175 57911175 T G DDIT3 Silent p.S28S 0.16 TCGA-GN-A264-06 14 102457883 102457883 G C DYNC1H1 Missense_Mutation p.R963T 0.43 benign(0.016) TCGA-GN-A264-06 14 24976701 24976701 C T CMA1 Missense_Mutation p.G24R 0.38 deleterious(0.01) possibly_damaging(0.704) TCGA-GN-A264-06 16 18549973 18549973 G A NOMO2 Silent p.F365F 0.50 TCGA-GN-A264-06 16 20781308 20781308 G A ACSM3 Intron 0.30 TCGA-GN-A264-06 16 67261063 67261063 A G TMEM208 5'UTR 0.18 TCGA-GN-A264-06 16 67860152 67860152 G A TSNAXIP1 Silent p.G360G 0.12 TCGA-GN-A264-06 16 67860594 67860594 G A TSNAXIP1 Splice_Site p.X414_splice 0.12 TCGA-GN-A264-06 16 67860932 67860932 G A TSNAXIP1 Missense_Mutation p.A487T 0.11 tolerated(0.29) benign(0.014) TCGA-GN-A264-06 16 67861433 67861433 G T TSNAXIP1 Nonsense_Mutation p.E563* 0.15 TCGA-GN-A264-06 16 67984340 67984340 G T SLC12A4 Missense_Mutation p.P506H 0.08 deleterious(0.03) probably_damaging(1) TCGA-GN-A264-06 16 68024759 68024759 C A DPEP2 Missense_Mutation p.A292S 0.16 tolerated(1) benign(0.01) TCGA-GN-A264-06 16 68024861 68024861 C T DPEP2 Missense_Mutation p.D258N 0.08 deleterious(0) probably_damaging(0.954) TCGA-GN-A264-06 16 68024897 68024897 C G DPEP2 Missense_Mutation p.V246L 0.06 deleterious(0.04) possibly_damaging(0.765) TCGA-GN-A264-06 16 69874163 69874163 G A WWP2 Missense_Mutation p.D159N 0.10 tolerated(0.68) benign(0.102) TCGA-GN-A264-06 16 86601482 86601483 GC A FOXC2 Frame_Shift_Del p.A181Tfs*20 0.28 TCGA-GN-A264-06 16 88781275 88781275 C T CTU2 Missense_Mutation p.P454S 0.13 tolerated(0.77) benign(0.002) TCGA-GN-A264-06 17 40947833 40947833 T G WNK4 Silent p.A1071A 0.38 TCGA-GN-A264-06 17 53045939 53045939 C A COX11 Silent p.G23G 0.22 TCGA-GN-A264-06 18 71816215 71816215 C T TIMM21 Missense_Mutation p.L58F 0.31 tolerated(0.26) benign(0.007) TCGA-GN-A264-06 19 22156977 22156977 A T ZNF208 Missense_Mutation p.C287S 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A264-06 19 4902820 4902820 C T ARRDC5 Silent p.S20S 0.33 TCGA-GN-A264-06 19 6307274 6307274 C T ACER1 Silent p.L172L 0.38 TCGA-GN-A264-06 1 156531700 156531700 C T IQGAP3 Missense_Mutation p.R324Q 0.24 tolerated(0.35) benign(0.023) TCGA-GN-A264-06 1 190067796 190067796 C A BRINP3 Missense_Mutation p.L551F 0.20 deleterious(0.01) possibly_damaging(0.617) TCGA-GN-A264-06 1 236143148 236143148 C A NID1 Missense_Mutation p.K1161N 0.24 tolerated(0.38) benign(0.018) TCGA-GN-A264-06 1 43166649 43166649 C T YBX1 Missense_Mutation p.S313L 0.26 tolerated(0.19) benign(0) TCGA-GN-A264-06 20 13695704 13695704 C T ESF1 Silent p.E791E 0.16 TCGA-GN-A264-06 20 32199124 32199124 C T CBFA2T2 Missense_Mutation p.L144F 0.20 deleterious(0.03) possibly_damaging(0.888) TCGA-GN-A264-06 20 40828021 40828021 C A PTPRT Missense_Mutation p.A784S 0.24 deleterious(0.04) benign(0.022) TCGA-GN-A264-06 20 60551204 60551204 T C TAF4 3'UTR 0.20 TCGA-GN-A264-06 21 32496904 32496904 A G TIAM1 Silent p.Y1414Y 0.56 TCGA-GN-A264-06 2 179393506 179393506 T C TTN Missense_Mutation p.S35658G 0.17 TCGA-GN-A264-06 2 197986223 197986223 A G ANKRD44 Missense_Mutation p.C247R 0.49 deleterious(0) probably_damaging(0.999) TCGA-GN-A264-06 2 208631778 208631778 C T FZD5 Silent p.A562A 0.25 TCGA-GN-A264-06 2 28050600 28050600 G A RBKS Missense_Mutation p.T210M 0.60 tolerated(0.11) benign(0.01) TCGA-GN-A264-06 3 175165061 175165061 G A NAALADL2 Missense_Mutation p.V379M 0.35 deleterious(0) possibly_damaging(0.844) TCGA-GN-A264-06 3 3887651 3887651 G A LRRN1 Silent p.T442T 0.68 TCGA-GN-A264-06 3 87309092 87309092 C T POU1F1 Silent p.L302L 0.16 TCGA-GN-A264-06 3 9780769 9780769 A T BRPF1 Missense_Mutation p.N229I 0.20 deleterious(0) probably_damaging(0.997) TCGA-GN-A264-06 4 110585485 110585485 T A CCDC109B Nonsense_Mutation p.L129* 0.17 TCGA-GN-A264-06 4 122766735 122766735 A C BBS7 Missense_Mutation p.F385C 0.13 deleterious(0) possibly_damaging(0.723) TCGA-GN-A264-06 4 55599340 55599340 T G KIT Missense_Mutation p.N822K 0.64 deleterious(0) probably_damaging(1) TCGA-GN-A264-06 4 69188621 69188621 C G YTHDC1 Missense_Mutation p.E483Q 0.19 tolerated(0.07) benign(0.103) TCGA-GN-A264-06 5 140214937 140214937 C T PCDHA7 Silent p.V323V 0.20 TCGA-GN-A264-06 5 1494950 1494950 G A LPCAT1 Missense_Mutation p.R120W 0.32 deleterious(0) probably_damaging(0.954) TCGA-GN-A264-06 5 150488079 150488079 C T ANXA6 Missense_Mutation p.D573N 0.26 deleterious(0) probably_damaging(0.988) TCGA-GN-A264-06 5 23522742 23522742 C A PRDM9 Missense_Mutation p.N210K 0.15 deleterious(0) benign(0.379) TCGA-GN-A264-06 5 42800733 42800733 T C SEPP1 3'UTR 0.21 TCGA-GN-A264-06 5 55248114 55248114 T G IL6ST Missense_Mutation p.S506R 0.50 tolerated(0.06) benign(0.009) TCGA-GN-A264-06 6 24357675 24357675 G C KAAG1 5'UTR 0.13 TCGA-GN-A264-06 7 127669618 127669618 G A LRRC4 Missense_Mutation p.P359L 0.18 deleterious(0) probably_damaging(0.994) TCGA-GN-A264-06 7 26236930 26236934 CTTAC - HNRNPA2B1 Splice_Site p.X100_splice 0.31 TCGA-GN-A264-06 8 146156591 146156591 G A ZNF16 Missense_Mutation p.R528C 0.35 deleterious(0.05) benign(0.047) TCGA-GN-A264-06 8 25315802 25315802 C T KCTD9 5'UTR 0.45 TCGA-GN-A264-06 8 53126843 53126843 G T ST18 5'UTR 0.44 TCGA-GN-A264-06 9 104433261 104433261 C A GRIN3A Missense_Mutation p.W478L 0.33 deleterious(0) probably_damaging(0.998) TCGA-GN-A264-06 9 39078390 39078390 A G CNTNAP3 Missense_Mutation p.V1246A 0.19 deleterious(0) possibly_damaging(0.593) TCGA-GN-A265-06 10 107015523 107015523 G A SORCS3 Missense_Mutation p.V1101I 0.17 tolerated(0.09) benign(0.085) TCGA-GN-A265-06 10 114925741 114925741 C T TCF7L2 3'UTR 0.10 TCGA-GN-A265-06 10 118435910 118435910 G A HSPA12A Missense_Mutation p.R464W 0.09 deleterious(0.01) possibly_damaging(0.663) TCGA-GN-A265-06 10 123239526 123239526 C T FGFR2 Missense_Mutation p.D772N 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-GN-A265-06 10 15262951 15262951 G A FAM171A1 Missense_Mutation p.P288L 0.09 tolerated(0.32) benign(0.076) TCGA-GN-A265-06 10 20534415 20534415 C A PLXDC2 Missense_Mutation p.A485D 0.07 deleterious(0) possibly_damaging(0.801) TCGA-GN-A265-06 10 21124516 21124516 C T NEBL Missense_Mutation p.G459R 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-GN-A265-06 10 27539511 27539511 G A RP11-85G18.6 RNA 0.10 TCGA-GN-A265-06 10 28023489 28023489 G C MKX Missense_Mutation p.T245R 0.07 tolerated(0.16) possibly_damaging(0.776) TCGA-GN-A265-06 10 61833963 61833963 C T ANK3 Missense_Mutation p.E2226K 0.10 benign(0.023) TCGA-GN-A265-06 10 69366759 69366759 C T CTNNA3 Missense_Mutation p.G50R 0.12 tolerated(0.06) probably_damaging(0.988) TCGA-GN-A265-06 10 96522588 96522588 C T CYP2C19 Silent p.I42I 0.09 TCGA-GN-A265-06 10 96829127 96829127 G A CYP2C8 Silent p.L11L 0.10 TCGA-GN-A265-06 10 98087355 98087355 G A DNTT Silent p.R335R 0.08 TCGA-GN-A265-06 11 108225536 108225536 A G ATM Splice_Site p.X2929_splice 0.06 TCGA-GN-A265-06 11 134076553 134076553 G A NCAPD3 Silent p.A319A 0.17 TCGA-GN-A265-06 11 16810768 16810768 C T PLEKHA7 Missense_Mutation p.E1078K 0.07 deleterious(0) probably_damaging(0.947) TCGA-GN-A265-06 11 48328317 48328317 C T OR4S1 Silent p.P181P 0.18 TCGA-GN-A265-06 11 49195014 49195014 G A FOLH1 Silent p.L374L 0.13 TCGA-GN-A265-06 11 5020679 5020679 G A OR51L1 Missense_Mutation p.G156E 0.23 tolerated(0.14) probably_damaging(0.975) TCGA-GN-A265-06 11 55135894 55135894 G A OR4A15 Missense_Mutation p.G179R 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GN-A265-06 11 5730298 5730298 A G TRIM22 Missense_Mutation p.N306S 0.16 tolerated(0.13) benign(0.282) TCGA-GN-A265-06 11 6235700 6235700 T C FAM160A2 Missense_Mutation p.K847R 0.10 tolerated(0.12) possibly_damaging(0.557) TCGA-GN-A265-06 11 62502864 62502864 T A TTC9C Silent p.L83L 0.12 TCGA-GN-A265-06 11 67816662 67816662 G A TCIRG1 Nonsense_Mutation p.W596* 0.10 TCGA-GN-A265-06 11 93779085 93779085 T A HEPHL1 Splice_Site p.X139_splice 0.10 TCGA-GN-A265-06 12 100042415 100042415 C T FAM71C Missense_Mutation p.P155S 0.10 tolerated(0.54) benign(0.264) TCGA-GN-A265-06 12 106708133 106708133 C A TCP11L2 Intron 0.10 TCGA-GN-A265-06 12 109882024 109882024 C G MYO1H Missense_Mutation p.S928C 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A265-06 12 110205859 110205859 G A FAM222A Missense_Mutation p.S42N 0.11 deleterious(0.01) benign(0.109) TCGA-GN-A265-06 12 11461723 11461723 C T PRB4 Missense_Mutation p.G65E 0.07 deleterious_low_confidence(0) unknown(0) TCGA-GN-A265-06 12 117904950 117904950 G A KSR2 3'UTR 0.35 TCGA-GN-A265-06 12 117964911 117964911 G A KSR2 Missense_Mutation p.P606S 0.15 tolerated(0.26) benign(0.065) TCGA-GN-A265-06 12 125609487 125609487 C T AACS Missense_Mutation p.S409F 0.08 deleterious(0) probably_damaging(0.983) TCGA-GN-A265-06 12 13140060 13140060 G A HEBP1 Intron 0.20 TCGA-GN-A265-06 12 19418703 19418703 C T PLEKHA5 Silent p.I210I 0.13 TCGA-GN-A265-06 12 25031517 25031517 G A BCAT1 Missense_Mutation p.P165S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A265-06 12 344274 344274 C T SLC6A13 Silent p.T271T 0.18 TCGA-GN-A265-06 12 40012962 40012962 C T ABCD2 Missense_Mutation p.M152I 0.10 tolerated(0.25) benign(0.016) TCGA-GN-A265-06 12 49666880 49666880 G A TUBA1C Nonsense_Mutation p.W407* 0.11 TCGA-GN-A265-06 12 54894360 54894360 G A NCKAP1L Missense_Mutation p.R86K 0.06 tolerated(1) benign(0.001) TCGA-GN-A265-06 12 56679756 56679756 T C CS Missense_Mutation p.K49E 0.13 deleterious(0) benign(0.126) TCGA-GN-A265-06 12 58017649 58017649 C T SLC26A10 Silent p.L362L 0.07 TCGA-GN-A265-06 12 66309003 66309003 C T HMGA2 Intron 0.08 TCGA-GN-A265-06 12 8074018 8074018 G A SLC2A3 Silent p.T494T 0.09 TCGA-GN-A265-06 12 8074019 8074019 G A SLC2A3 Missense_Mutation p.T494I 0.09 deleterious_low_confidence(0.01) benign(0.136) TCGA-GN-A265-06 13 103698517 103698517 T C SLC10A2 Missense_Mutation p.K338R 0.11 tolerated(0.22) benign(0.001) TCGA-GN-A265-06 13 26789559 26789559 G A RNF6 Missense_Mutation p.H154Y 0.20 deleterious(0) benign(0.439) TCGA-GN-A265-06 13 32367120 32367120 G A RXFP2 Missense_Mutation p.D561N 0.14 tolerated(0.12) benign(0.033) TCGA-GN-A265-06 13 32798442 32798442 G A FRY Silent p.P1612P 0.14 TCGA-GN-A265-06 13 37539795 37539795 T A ALG5 Silent p.G230G 0.09 TCGA-GN-A265-06 13 38153415 38153415 A G POSTN Missense_Mutation p.V581A 0.08 tolerated(0.3) probably_damaging(0.998) TCGA-GN-A265-06 14 106053516 106053516 C T IGHA2 Missense_Mutation p.E261K 0.20 tolerated(0.2) benign(0.068) TCGA-GN-A265-06 14 106173747 106173747 C T IGHA1 Missense_Mutation p.E274K 0.12 tolerated(0.19) benign(0.069) TCGA-GN-A265-06 14 106967281 106967281 G A IGHV1-46 Missense_Mutation p.S40F 0.15 deleterious(0.02) possibly_damaging(0.619) TCGA-GN-A265-06 14 20019837 20019837 G A POTEM Silent p.F128F 0.33 TCGA-GN-A265-06 14 42357007 42357007 T A LRFN5 Silent p.G393G 0.23 TCGA-GN-A265-06 14 73490736 73490736 G A ZFYVE1 Nonsense_Mutation p.Q161* 0.09 TCGA-GN-A265-06 14 75378079 75378079 A G RPS6KL1 Missense_Mutation p.L179P 0.12 deleterious(0) probably_damaging(0.947) TCGA-GN-A265-06 15 35083487 35083487 G A ACTC1 Missense_Mutation p.S273F 0.12 tolerated_low_confidence(0.1) probably_damaging(0.937) TCGA-GN-A265-06 15 45007783 45007800 GCAAGGACTGGTCTTTCT - B2M In_Frame_Del p.S77_Y83delinsN 0.11 TCGA-GN-A265-06 15 73536798 73536798 G C NEO1 Missense_Mutation p.G522A 0.18 tolerated(0.06) probably_damaging(0.93) TCGA-GN-A265-06 15 78755386 78755386 G A IREB2 Missense_Mutation p.E77K 0.21 deleterious(0) possibly_damaging(0.757) TCGA-GN-A265-06 15 83221280 83221280 G A CPEB1 Silent p.L384L 0.23 TCGA-GN-A265-06 16 11000685 11000685 G A CIITA Missense_Mutation p.D446N 0.18 deleterious(0) probably_damaging(0.989) TCGA-GN-A265-06 16 2153649 2153649 G A PKD1 Silent p.G2803G 0.13 TCGA-GN-A265-06 16 23200820 23200820 G A SCNN1G Missense_Mutation p.G149E 0.13 tolerated(0.53) possibly_damaging(0.608) TCGA-GN-A265-06 16 28620051 28620051 G T SULT1A1 Silent p.L42L 0.11 TCGA-GN-A265-06 16 29825783 29825783 G A PRRT2 Missense_Mutation p.G337S 0.11 deleterious_low_confidence(0) unknown(0) TCGA-GN-A265-06 16 31087904 31087904 C T ZNF646 Missense_Mutation p.P87S 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-GN-A265-06 16 49525121 49525121 A G ZNF423 3'UTR 0.10 TCGA-GN-A265-06 16 58589751 58589751 T A CNOT1 Missense_Mutation p.E847D 0.13 deleterious(0) probably_damaging(0.969) TCGA-GN-A265-06 16 71697869 71697869 G A PHLPP2 Silent p.L640L 0.19 TCGA-GN-A265-06 16 81060211 81060211 C T CENPN Missense_Mutation p.P260S 0.06 deleterious(0.05) benign(0.052) TCGA-GN-A265-06 17 10404762 10404762 T C MYH1 Missense_Mutation p.K1135E 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A265-06 17 15522499 15522499 A G CDRT1 Silent p.L110L 0.07 TCGA-GN-A265-06 17 32906108 32906108 G A C17orf102 Silent p.S64S 0.10 TCGA-GN-A265-06 17 34251717 34251717 C T RDM1 Silent p.P153P 0.17 TCGA-GN-A265-06 17 3638140 3638140 T C ITGAE Missense_Mutation p.R876G 0.16 deleterious(0.02) possibly_damaging(0.848) TCGA-GN-A265-06 17 36499253 36499253 C T GPR179 Silent p.G140G 0.08 TCGA-GN-A265-06 17 38325581 38325581 C T CASC3 Missense_Mutation p.P657L 0.18 deleterious(0.02) benign(0.276) TCGA-GN-A265-06 17 42458255 42458255 C T ITGA2B Missense_Mutation p.G462E 0.09 deleterious(0.04) probably_damaging(1) TCGA-GN-A265-06 17 48263849 48263849 G A COL1A1 Silent p.P1278P 0.24 TCGA-GN-A265-06 17 48263850 48263850 G A COL1A1 Missense_Mutation p.P1278L 0.24 unknown(0) TCGA-GN-A265-06 17 59485543 59485543 C T TBX2 Silent p.S605S 0.25 TCGA-GN-A265-06 17 67145059 67145059 A C ABCA10 Nonsense_Mutation p.L1514* 0.17 TCGA-GN-A265-06 17 7319161 7319161 G A NLGN2 Missense_Mutation p.D457N 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A265-06 17 7324290 7324290 C T SPEM1 Missense_Mutation p.P99L 0.19 deleterious(0) probably_damaging(0.991) TCGA-GN-A265-06 17 7359980 7359980 G T CHRNB1 Missense_Mutation p.G482W 0.08 deleterious(0) probably_damaging(1) TCGA-GN-A265-06 17 77709192 77709192 G A ENPP7 Silent p.T250T 0.10 TCGA-GN-A265-06 18 12691399 12691399 G A CEP76 Nonsense_Mutation p.R298* 0.14 TCGA-GN-A265-06 18 15316727 15316727 G A RNU6-721P 3'Flank 0.15 TCGA-GN-A265-06 18 2743810 2743810 C T SMCHD1 Missense_Mutation p.P1229S 0.10 tolerated(0.09) possibly_damaging(0.827) TCGA-GN-A265-06 18 29100904 29100904 C T DSG2 Nonsense_Mutation p.R119* 0.09 TCGA-GN-A265-06 18 31325110 31325110 G A ASXL3 Silent p.Q1766Q 0.20 TCGA-GN-A265-06 18 43535055 43535055 C T EPG5 Missense_Mutation p.E105K 0.19 tolerated_low_confidence(0.12) benign(0.037) TCGA-GN-A265-06 18 56648784 56648784 C T ZNF532 Missense_Mutation p.P1116S 0.19 deleterious(0.03) benign(0.434) TCGA-GN-A265-06 18 72229330 72229330 C T CNDP1 Missense_Mutation p.A172V 0.20 deleterious(0) probably_damaging(0.963) TCGA-GN-A265-06 18 9570421 9570421 G T PPP4R1 Missense_Mutation p.P436Q 0.17 tolerated(0.2) benign(0.005) TCGA-GN-A265-06 19 12962960 12962960 T C MAST1 Missense_Mutation p.L303P 0.13 deleterious(0) probably_damaging(0.999) TCGA-GN-A265-06 19 13054348 13054348 C T CALR Intron 0.20 TCGA-GN-A265-06 19 14591193 14591193 C T GIPC1 Silent p.E193E 0.11 TCGA-GN-A265-06 19 15784418 15784418 G A CYP4F12 Missense_Mutation p.G27S 0.07 tolerated(0.1) benign(0.006) TCGA-GN-A265-06 19 20229365 20229365 C T ZNF90 Silent p.I334I 0.33 TCGA-GN-A265-06 19 2115260 2115260 G A AP3D1 Silent p.A769A 0.15 TCGA-GN-A265-06 19 36435675 36435675 C T LRFN3 Silent p.I547I 0.19 TCGA-GN-A265-06 19 41942339 41942339 C T ATP5SL Missense_Mutation p.G91D 0.17 deleterious(0.01) benign(0.002) TCGA-GN-A265-06 19 41942340 41942340 C T ATP5SL Missense_Mutation p.G91S 0.16 tolerated(0.1) benign(0) TCGA-GN-A265-06 19 42752930 42752930 T G ERF Missense_Mutation p.D445A 0.07 tolerated_low_confidence(0.1) benign(0.073) TCGA-GN-A265-06 19 43259419 43259419 C T PSG8 Splice_Site p.X237_splice 0.17 TCGA-GN-A265-06 19 43358133 43358133 C T PSG10P RNA 0.07 TCGA-GN-A265-06 19 4445474 4445474 G T UBXN6 3'UTR 0.13 TCGA-GN-A265-06 19 46289702 46289702 G A DMWD Missense_Mutation p.T351I 0.13 deleterious(0) probably_damaging(0.961) TCGA-GN-A265-06 19 46375598 46375598 C T FOXA3 Missense_Mutation p.P112L 0.21 deleterious(0.01) benign(0.273) TCGA-GN-A265-06 19 48374620 48374620 A T SULT2A1 3'UTR 0.33 TCGA-GN-A265-06 19 49131767 49131767 A C SPHK2 Intron 0.20 TCGA-GN-A265-06 19 50216782 50216782 G A CPT1C Missense_Mutation p.E778K 0.13 tolerated_low_confidence(0.1) benign(0.001) TCGA-GN-A265-06 19 52023452 52023452 G A SIGLEC6 Missense_Mutation p.P416S 0.09 tolerated(0.22) benign(0.011) TCGA-GN-A265-06 19 56424571 56424571 G A NLRP13 Silent p.I204I 0.11 TCGA-GN-A265-06 19 57325750 57325750 G A PEG3 Missense_Mutation p.H1354Y 0.18 deleterious(0.04) possibly_damaging(0.565) TCGA-GN-A265-06 19 58849896 58849896 G A ZSCAN22 Missense_Mutation p.R227K 0.17 tolerated(0.92) benign(0.025) TCGA-GN-A265-06 19 9009653 9009653 C T MUC16 Missense_Mutation p.G13025R 0.12 possibly_damaging(0.766) TCGA-GN-A265-06 1 104161622 104161622 C T AMY2A Silent p.N135N 0.11 TCGA-GN-A265-06 1 112305559 112305559 C G DDX20 Missense_Mutation p.C414W 0.09 deleterious(0) probably_damaging(0.935) TCGA-GN-A265-06 1 119427335 119427335 C T TBX15 3'UTR 0.20 TCGA-GN-A265-06 1 12336754 12336754 G A VPS13D Missense_Mutation p.D1037N 0.12 benign(0.418) TCGA-GN-A265-06 1 12339581 12339581 C T VPS13D Silent p.T1492T 0.17 TCGA-GN-A265-06 1 12726223 12726223 C T AADACL4 Missense_Mutation p.S234F 0.09 deleterious(0.02) possibly_damaging(0.874) TCGA-GN-A265-06 1 14104971 14104971 C T PRDM2 Silent p.L227L 0.11 TCGA-GN-A265-06 1 156786526 156786526 G A SH2D2A 5'UTR 0.32 TCGA-GN-A265-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.18 deleterious(0.05) benign(0.008) TCGA-GN-A265-06 1 160389198 160389198 A G VANGL2 Missense_Mutation p.Y200C 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A265-06 1 165173144 165173144 G A LMX1A Silent p.S374S 0.18 TCGA-GN-A265-06 1 16532070 16532070 G A ARHGEF19 Missense_Mutation p.P515L 0.16 deleterious(0) probably_damaging(0.996) TCGA-GN-A265-06 1 179310230 179310230 T C SOAT1 Missense_Mutation p.W189R 0.16 deleterious(0.03) benign(0.361) TCGA-GN-A265-06 1 197008460 197008460 G A F13B 3'UTR 0.19 TCGA-GN-A265-06 1 204913534 204913534 C T NFASC Missense_Mutation p.P31S 0.17 tolerated(0.28) benign(0.095) TCGA-GN-A265-06 1 205553164 205553164 C T MFSD4 Silent p.L258L 0.16 TCGA-GN-A265-06 1 206225076 206225076 G A AVPR1B Silent p.V212V 0.17 TCGA-GN-A265-06 1 210857140 210857140 C T KCNH1 Missense_Mutation p.G818E 0.23 tolerated(0.07) benign(0.028) TCGA-GN-A265-06 1 212988548 212988548 T A TATDN3 3'UTR 0.15 TCGA-GN-A265-06 1 237666774 237666774 C T RYR2 Missense_Mutation p.A861V 0.12 possibly_damaging(0.783) TCGA-GN-A265-06 1 241099926 241099926 C T RGS7 Missense_Mutation p.D103N 0.15 tolerated(0.64) probably_damaging(0.991) TCGA-GN-A265-06 1 246810596 246810596 T C CNST Missense_Mutation p.C365R 0.36 tolerated(0.06) benign(0.006) TCGA-GN-A265-06 1 26131760 26131760 C T SEPN1 Silent p.F177F 0.13 TCGA-GN-A265-06 1 27217645 27217645 G A GPATCH3 Silent p.S478S 0.13 TCGA-GN-A265-06 1 27278365 27278365 G A C1orf172 Silent p.I169I 0.10 TCGA-GN-A265-06 1 33956858 33956858 T A ZSCAN20 Missense_Mutation p.F334I 0.08 deleterious(0) probably_damaging(1) TCGA-GN-A265-06 1 35452992 35452992 C T ZMYM6 Missense_Mutation p.E1231K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-GN-A265-06 1 52896717 52896717 G A ZCCHC11 Missense_Mutation p.S1560F 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.492) TCGA-GN-A265-06 1 53980410 53980410 C T GLIS1 Missense_Mutation p.G416S 0.13 tolerated(0.17) benign(0.006) TCGA-GN-A265-06 1 55591072 55591072 G A USP24 Missense_Mutation p.S1294F 0.14 deleterious(0.01) benign(0.219) TCGA-GN-A265-06 1 70832184 70832184 T C HHLA3 Missense_Mutation p.L73P 0.20 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-GN-A265-06 1 84408284 84408284 G A TTLL7 Silent p.F195F 0.12 TCGA-GN-A265-06 1 85724326 85724326 G A C1orf52 Missense_Mutation p.P119L 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A265-06 20 10639139 10639139 C T JAG1 Nonsense_Mutation p.W224* 0.13 TCGA-GN-A265-06 20 19566131 19566131 C T SLC24A3 Silent p.G185G 0.18 TCGA-GN-A265-06 20 25485654 25485654 G A NINL Missense_Mutation p.S193F 0.12 tolerated(0.27) benign(0.025) TCGA-GN-A265-06 20 2597740 2597740 G A TMC2 Missense_Mutation p.G655S 0.18 tolerated(0.51) probably_damaging(0.98) TCGA-GN-A265-06 20 29978344 29978344 C T DEFB119 5'Flank 0.19 TCGA-GN-A265-06 20 33515041 33515041 G A ACSS2 3'UTR 0.13 TCGA-GN-A265-06 20 34022051 34022051 G A GDF5 Nonsense_Mutation p.Q388* 0.09 TCGA-GN-A265-06 20 34022052 34022052 G A GDF5OS Nonsense_Mutation p.W32* 0.08 TCGA-GN-A265-06 20 34241050 34241050 G A RBM12 Missense_Mutation p.A732V 0.15 tolerated_low_confidence(0.25) unknown(0) TCGA-GN-A265-06 20 3767143 3767143 C G CENPB 5'UTR 0.20 TCGA-GN-A265-06 20 4162833 4162833 C T SMOX Missense_Mutation p.P236L 0.17 deleterious(0) probably_damaging(0.987) TCGA-GN-A265-06 20 42697318 42697318 C T TOX2 Missense_Mutation p.L505F 0.18 deleterious(0) probably_damaging(0.994) TCGA-GN-A265-06 20 43836284 43836284 C T SEMG1 Missense_Mutation p.H116Y 0.18 tolerated(0.05) possibly_damaging(0.486) TCGA-GN-A265-06 20 44670038 44670038 G A SLC12A5 Missense_Mutation p.G332R 0.18 tolerated(0.27) benign(0.296) TCGA-GN-A265-06 20 45355517 45355517 C T SLC2A10 Missense_Mutation p.L435F 0.07 deleterious(0) probably_damaging(0.928) TCGA-GN-A265-06 20 45355518 45355518 T C SLC2A10 Missense_Mutation p.L435P 0.07 deleterious(0) probably_damaging(0.999) TCGA-GN-A265-06 20 47276592 47276592 C T PREX1 Silent p.E582E 0.20 TCGA-GN-A265-06 20 47864578 47864578 C T ZNFX1 Silent p.Q1661Q 0.16 TCGA-GN-A265-06 20 48568758 48568758 C T RNF114 3'UTR 0.21 TCGA-GN-A265-06 20 50007841 50007841 G A NFATC2 3'UTR 0.19 TCGA-GN-A265-06 20 60994776 60994776 C T RBBP8NL 5'UTR 0.16 TCGA-GN-A265-06 20 8637901 8637901 G A PLCB1 Missense_Mutation p.R222Q 0.16 deleterious(0) possibly_damaging(0.891) TCGA-GN-A265-06 20 9546931 9546931 G A PAK7 Missense_Mutation p.S364L 0.20 tolerated(0.37) benign(0) TCGA-GN-A265-06 21 45994463 45994463 C A KRTAP10-4 Nonsense_Mutation p.C276* 0.15 TCGA-GN-A265-06 21 45994464 45994464 A G KRTAP10-4 Missense_Mutation p.K277E 0.13 tolerated(0.12) unknown(0) TCGA-GN-A265-06 21 48064250 48064250 C T PRMT2 Silent p.I59I 0.21 TCGA-GN-A265-06 22 22735666 22735666 G A IGLV1-44 Silent p.E101E 0.08 TCGA-GN-A265-06 22 36960482 36960482 G A CACNG2 Silent p.F296F 0.16 TCGA-GN-A265-06 22 37325760 37325760 C T CSF2RB Missense_Mutation p.A210V 0.26 deleterious(0) probably_damaging(0.994) TCGA-GN-A265-06 22 38120938 38120938 G A TRIOBP Missense_Mutation p.R792K 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.654) TCGA-GN-A265-06 22 46653866 46653866 G A PKDREJ Missense_Mutation p.S1785L 0.23 tolerated(0.15) possibly_damaging(0.892) TCGA-GN-A265-06 2 116599896 116599896 C T DPP10 Missense_Mutation p.P793L 0.22 tolerated(0.06) benign(0.012) TCGA-GN-A265-06 2 132235846 132235846 G A TUBA3D Missense_Mutation p.S38N 0.08 tolerated_low_confidence(0.06) benign(0.004) TCGA-GN-A265-06 2 155566133 155566133 G A KCNJ3 Missense_Mutation p.G241S 0.11 deleterious(0) probably_damaging(0.986) TCGA-GN-A265-06 2 165378510 165378510 A C GRB14 Missense_Mutation p.S266A 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A265-06 2 170009450 170009450 C T LRP2 Missense_Mutation p.G4107E 0.20 possibly_damaging(0.796) TCGA-GN-A265-06 2 176812397 176812397 G C KIAA1715 Missense_Mutation p.Q173E 0.07 tolerated(0.3) benign(0.066) TCGA-GN-A265-06 2 179437307 179437307 C T TTN Missense_Mutation p.D24518N 0.14 TCGA-GN-A265-06 2 179455439 179455439 C T TTN Missense_Mutation p.G20338E 0.14 TCGA-GN-A265-06 2 179577951 179577951 C T TTN Silent p.R8970R 0.26 TCGA-GN-A265-06 2 183066494 183066494 C T PDE1A Missense_Mutation p.E325K 0.09 deleterious(0) possibly_damaging(0.792) TCGA-GN-A265-06 2 187692974 187692974 C T ZSWIM2 Missense_Mutation p.G547S 0.19 tolerated(0.79) benign(0.004) TCGA-GN-A265-06 2 189907957 189907957 C T COL5A2 Missense_Mutation p.G1131S 0.13 unknown(0) TCGA-GN-A265-06 2 198949115 198949115 G A PLCL1 Missense_Mutation p.E292K 0.26 tolerated(0.06) possibly_damaging(0.652) TCGA-GN-A265-06 2 207172439 207172439 G A ZDBF2 Missense_Mutation p.E1063K 0.15 tolerated(0.16) possibly_damaging(0.678) TCGA-GN-A265-06 2 21227313 21227313 C T APOB Missense_Mutation p.G3972E 0.11 benign(0.002) TCGA-GN-A265-06 2 21233505 21233505 C T APOB Missense_Mutation p.E2079K 0.09 benign(0.018) TCGA-GN-A265-06 2 228012300 228012300 C T COL4A4 Intron 0.14 TCGA-GN-A265-06 2 239180104 239180104 G A PER2 Silent p.I207I 0.16 TCGA-GN-A265-06 2 3743413 3743413 C T ALLC Silent p.V206V 0.15 TCGA-GN-A265-06 2 43939501 43939501 C T PLEKHH2 Silent p.T813T 0.12 TCGA-GN-A265-06 2 54041754 54041754 T A ERLEC1 Missense_Mutation p.L434Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-GN-A265-06 2 54876285 54876285 C T SPTBN1 Silent p.V1720V 0.12 TCGA-GN-A265-06 2 56611443 56611443 G A CCDC85A Missense_Mutation p.G539R 0.19 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GN-A265-06 2 69271912 69271912 G A ANTXR1 Missense_Mutation p.R88Q 0.10 tolerated(1) benign(0.054) TCGA-GN-A265-06 2 71908140 71908140 G A DYSF Missense_Mutation p.E2025K 0.12 deleterious(0) probably_damaging(0.996) TCGA-GN-A265-06 2 89278069 89278069 C T IGKV3-7 Missense_Mutation p.G89E 0.22 deleterious(0.02) possibly_damaging(0.584) TCGA-GN-A265-06 3 108110754 108110754 C T MYH15 Silent p.L1781L 0.11 TCGA-GN-A265-06 3 108174625 108174625 G A MYH15 Silent p.S760S 0.10 TCGA-GN-A265-06 3 108174626 108174626 G A MYH15 Missense_Mutation p.S760F 0.09 tolerated(0.05) benign(0.034) TCGA-GN-A265-06 3 121366201 121366201 C T HCLS1 Missense_Mutation p.G85S 0.08 deleterious(0) probably_damaging(0.959) TCGA-GN-A265-06 3 126737356 126737356 C T PLXNA1 Missense_Mutation p.L1294F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A265-06 3 16646751 16646751 G A DAZL 5'Flank 0.15 TCGA-GN-A265-06 3 167246892 167246892 C T WDR49 Missense_Mutation p.R433Q 0.07 tolerated(0.93) benign(0.002) TCGA-GN-A265-06 3 183777785 183777785 C A HTR3C Silent p.P365P 0.14 TCGA-GN-A265-06 3 197670848 197670848 G A IQCG Missense_Mutation p.P28L 0.16 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-GN-A265-06 3 38141783 38141783 C T DLEC1 Missense_Mutation p.P911S 0.09 tolerated(0.08) benign(0.049) TCGA-GN-A265-06 3 46450311 46450311 C T CCRL2 Silent p.F259F 0.08 TCGA-GN-A265-06 3 48510878 48510878 C T SHISA5 Silent p.Q175Q 0.10 TCGA-GN-A265-06 3 49162318 49162318 G A LAMB2 Silent p.D975D 0.08 TCGA-GN-A265-06 3 49785291 49785291 G A IP6K1 Silent p.S61S 0.13 TCGA-GN-A265-06 3 51475831 51475831 C T VPRBP Missense_Mutation p.R199Q 0.11 tolerated(0.26) benign(0.142) TCGA-GN-A265-06 3 63965609 63965609 C T ATXN7 Missense_Mutation p.S173F 0.09 tolerated(0.71) possibly_damaging(0.859) TCGA-GN-A265-06 3 7188208 7188208 C T GRM7 Missense_Mutation p.R197C 0.09 deleterious(0) probably_damaging(0.998) TCGA-GN-A265-06 4 106367568 106367568 T C PPA2 Missense_Mutation p.Y138C 0.12 deleterious(0) probably_damaging(0.996) TCGA-GN-A265-06 4 126371967 126371967 C T FAT4 Missense_Mutation p.L3266F 0.14 probably_damaging(1) TCGA-GN-A265-06 4 144449755 144449755 A G SMARCA5 Missense_Mutation p.E326G 0.10 tolerated(0.22) benign(0.315) TCGA-GN-A265-06 4 42895338 42895338 C T GRXCR1 Missense_Mutation p.R19W 0.10 deleterious(0) probably_damaging(0.999) TCGA-GN-A265-06 4 44177029 44177029 C T KCTD8 Nonsense_Mutation p.W400* 0.17 TCGA-GN-A265-06 4 49034655 49034655 C T CWH43 Silent p.I527I 0.15 TCGA-GN-A265-06 4 49034687 49034687 C T CWH43 Missense_Mutation p.S538L 0.12 deleterious(0.01) possibly_damaging(0.614) TCGA-GN-A265-06 4 52883637 52883637 A G LRRC66 Missense_Mutation p.F48S 0.14 tolerated(0.64) benign(0.213) TCGA-GN-A265-06 4 680340 680340 G A MFSD7 Missense_Mutation p.S92F 0.29 tolerated(0.07) benign(0.031) TCGA-GN-A265-06 4 70620402 70620402 C T SULT1B1 Missense_Mutation p.G88E 0.07 tolerated(0.28) possibly_damaging(0.557) TCGA-GN-A265-06 5 131930706 131930706 G A RAD50 Missense_Mutation p.E647K 0.11 tolerated(0.33) benign(0.039) TCGA-GN-A265-06 5 137419754 137419754 C T WNT8A 5'Flank 0.10 TCGA-GN-A265-06 5 139908431 139908431 C T ANKHD1 Missense_Mutation p.P1967L 0.16 probably_damaging(0.941) TCGA-GN-A265-06 5 140187229 140187229 C T PCDHA4 Missense_Mutation p.P153S 0.15 tolerated_low_confidence(0.09) benign(0.124) TCGA-GN-A265-06 5 140235762 140235762 C T PCDHA10 Silent p.F43F 0.09 TCGA-GN-A265-06 5 140308559 140308559 A T PCDHAC1 Missense_Mutation p.L694F 0.09 deleterious(0.01) benign(0.334) TCGA-GN-A265-06 5 140554096 140554096 C T PCDHB7 Silent p.F560F 0.11 TCGA-GN-A265-06 5 140603804 140603804 C T PCDHB14 Missense_Mutation p.P243S 0.13 tolerated_low_confidence(0.55) benign(0.006) TCGA-GN-A265-06 5 140719052 140719052 C T PCDHGA2 Missense_Mutation p.L172F 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A265-06 5 142500670 142500670 T G ARHGAP26 Missense_Mutation p.F552L 0.15 deleterious(0.02) benign(0.087) TCGA-GN-A265-06 5 142500671 142500671 C T ARHGAP26 Nonsense_Mutation p.Q553* 0.16 TCGA-GN-A265-06 5 148930447 148930447 G A CSNK1A1 Silent p.S27S 0.19 TCGA-GN-A265-06 5 148930448 148930448 G A CSNK1A1 Missense_Mutation p.S27F 0.19 deleterious_low_confidence(0) benign(0.036) TCGA-GN-A265-06 5 176308072 176308072 C T HK3 3'UTR 0.24 TCGA-GN-A265-06 5 176721292 176721292 C T NSD1 Missense_Mutation p.S2308F 0.10 deleterious_low_confidence(0) benign(0.429) TCGA-GN-A265-06 5 23509604 23509604 C T PRDM9 Missense_Mutation p.S32F 0.14 deleterious_low_confidence(0) possibly_damaging(0.538) TCGA-GN-A265-06 5 2749026 2749026 C T IRX2 Missense_Mutation p.D266N 0.24 tolerated(0.1) benign(0.116) TCGA-GN-A265-06 5 36986309 36986309 T C NIPBL Silent p.S1009S 0.14 TCGA-GN-A265-06 5 71648498 71648498 G A PTCD2 Missense_Mutation p.E287K 0.22 tolerated(0.47) benign(0.006) TCGA-GN-A265-06 5 79924953 79924953 C T DHFR Missense_Mutation p.E173K 0.16 deleterious(0.01) possibly_damaging(0.799) TCGA-GN-A265-06 5 80638515 80638515 C T ACOT12 Nonsense_Mutation p.W368* 0.10 TCGA-GN-A265-06 5 96349474 96349474 C A LNPEP Missense_Mutation p.P720T 0.09 tolerated(0.11) benign(0.3) TCGA-GN-A265-06 6 106555006 106555006 G A PRDM1 Missense_Mutation p.G708E 0.10 deleterious(0) probably_damaging(0.996) TCGA-GN-A265-06 6 135726089 135726089 T C AHI1 Silent p.K996K 0.16 TCGA-GN-A265-06 6 146720330 146720330 A G GRM1 Missense_Mutation p.T719A 0.15 tolerated(0.64) benign(0.015) TCGA-GN-A265-06 6 152501270 152501270 C T SYNE1 Splice_Site p.X7820_splice 0.14 TCGA-GN-A265-06 6 152686086 152686086 G A SYNE1 Silent p.V3347V 0.19 TCGA-GN-A265-06 6 158923497 158923497 C T TULP4 Silent p.V934V 0.14 TCGA-GN-A265-06 6 30131599 30131599 G A TRIM15 Missense_Mutation p.M46I 0.14 tolerated(0.65) possibly_damaging(0.583) TCGA-GN-A265-06 6 31937189 31937189 C T SKIV2L Missense_Mutation p.R1178W 0.19 deleterious(0) probably_damaging(0.997) TCGA-GN-A265-06 6 32797702 32797707 GATACC - TAP2 Splice_Site p.X599_splice 0.12 TCGA-GN-A265-06 6 36981805 36981805 G C FGD2 Missense_Mutation p.R251P 0.15 deleterious(0) probably_damaging(1) TCGA-GN-A265-06 6 6318852 6318852 G A F13A1 Missense_Mutation p.P16S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A265-06 6 70851968 70851968 G T COL19A1 Missense_Mutation p.K524N 0.22 tolerated(0.07) possibly_damaging(0.903) TCGA-GN-A265-06 7 100552009 100552009 C T MUC3A Missense_Mutation p.P254S 0.04 tolerated(0.49) possibly_damaging(0.857) TCGA-GN-A265-06 7 102109094 102109094 C T LRWD1 Missense_Mutation p.P338L 0.33 deleterious(0.01) benign(0.42) TCGA-GN-A265-06 7 11632979 11632979 G A THSD7A Silent p.T391T 0.10 TCGA-GN-A265-06 7 137792290 137792290 A C AKR1D1 Missense_Mutation p.K273N 0.23 deleterious(0.01) possibly_damaging(0.483) TCGA-GN-A265-06 7 139657492 139657492 G A TBXAS1 Missense_Mutation p.E297K 0.20 tolerated(0.1) possibly_damaging(0.459) TCGA-GN-A265-06 7 140301361 140301361 C T DENND2A Silent p.G279G 0.23 TCGA-GN-A265-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-GN-A265-06 7 142640957 142640957 G A KEL Missense_Mutation p.S502L 0.13 deleterious(0.01) benign(0.038) TCGA-GN-A265-06 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.25 deleterious(0.03) benign(0.003) TCGA-GN-A265-06 7 14724893 14724893 C T DGKB Missense_Mutation p.G269E 0.13 tolerated(0.25) benign(0.271) TCGA-GN-A265-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.19 tolerated(0.95) benign(0) TCGA-GN-A265-06 7 20768024 20768024 G A ABCB5 Missense_Mutation p.R938Q 0.19 tolerated(0.06) benign(0.049) TCGA-GN-A265-06 7 21745129 21745129 G A DNAH11 Missense_Mutation p.G2181R 0.13 probably_damaging(1) TCGA-GN-A265-06 7 2472430 2472430 C T CHST12 Silent p.P52P 0.22 TCGA-GN-A265-06 7 38530661 38530661 G A AMPH Missense_Mutation p.P129S 0.06 deleterious(0) probably_damaging(1) TCGA-GN-A265-06 7 55238005 55238005 G A EGFR Intron 0.15 TCGA-GN-A265-06 7 73474766 73474766 G A ELN Missense_Mutation p.G561E 0.19 unknown(0) TCGA-GN-A265-06 7 82582497 82582497 G A PCLO Missense_Mutation p.T2591I 0.06 unknown(0) TCGA-GN-A265-06 7 92163790 92163790 G A RBM48 Missense_Mutation p.E175K 0.19 tolerated(0.43) benign(0.003) TCGA-GN-A265-06 8 106813585 106813585 G A ZFPM2 Silent p.K425K 0.11 TCGA-GN-A265-06 8 131861885 131861885 G A ADCY8 Missense_Mutation p.S792F 0.13 deleterious(0.01) benign(0.001) TCGA-GN-A265-06 8 144620568 144620568 A G ZC3H3 Silent p.V323V 0.06 TCGA-GN-A265-06 8 144621206 144621206 G A ZC3H3 Missense_Mutation p.L111F 0.14 tolerated(0.12) benign(0.059) TCGA-GN-A265-06 8 39775637 39775637 G A IDO1 Missense_Mutation p.D72N 0.18 tolerated(0.07) benign(0.012) TCGA-GN-A265-06 8 43211927 43211927 G A POTEA RNA 0.13 TCGA-GN-A265-06 8 43211928 43211928 G A POTEA RNA 0.13 TCGA-GN-A265-06 8 52320686 52320686 C T PXDNL Silent p.K1166K 0.12 TCGA-GN-A265-06 8 52366211 52366211 C T PXDNL Missense_Mutation p.G373R 0.22 tolerated(0.52) benign(0.02) TCGA-GN-A265-06 8 55537765 55537765 A C RP1 Missense_Mutation p.Q441H 0.18 deleterious(0.03) possibly_damaging(0.867) TCGA-GN-A265-06 8 71619239 71619239 A G XKR9 Missense_Mutation p.E115G 0.16 tolerated(0.21) benign(0.015) TCGA-GN-A265-06 9 115336746 115336746 C T KIAA1958 Missense_Mutation p.S129F 0.14 deleterious(0) possibly_damaging(0.902) TCGA-GN-A265-06 9 117552881 117552881 C T TNFSF15 Missense_Mutation p.E203K 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-GN-A265-06 9 120476865 120476865 C T TLR4 Missense_Mutation p.S820L 0.12 tolerated(0.18) benign(0.001) TCGA-GN-A265-06 X 111020090 111020090 C T TRPC5 Silent p.R791R 0.15 TCGA-GN-A265-06 X 115576098 115576098 C T SLC6A14 Silent p.L223L 0.23 TCGA-GN-A265-06 X 123200028 123200028 C T STAG2 Silent p.A700A 0.19 TCGA-GN-A265-06 X 141290877 141290877 G A MAGEC2 Silent p.F299F 0.16 TCGA-GN-A265-06 X 150841077 150841077 G A PASD1 Silent p.Q620Q 0.17 TCGA-GN-A265-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.21 deleterious(0.02) benign(0.166) TCGA-GN-A266-06 10 100183637 100183637 G A HPS1 Nonsense_Mutation p.Q469* 0.16 TCGA-GN-A266-06 10 101816837 101816837 G A CPN1 Missense_Mutation p.P315L 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 10 101816839 101816839 A T CPN1 Missense_Mutation p.F314L 0.25 deleterious(0) possibly_damaging(0.739) TCGA-GN-A266-06 10 102257790 102257790 G A SEC31B Missense_Mutation p.S620F 0.33 deleterious(0) possibly_damaging(0.823) TCGA-GN-A266-06 10 102283576 102283576 A G NDUFB8 3'UTR 0.18 TCGA-GN-A266-06 10 102566342 102566342 G A PAX2 Missense_Mutation p.E281K 0.19 tolerated(0.05) probably_damaging(0.993) TCGA-GN-A266-06 10 102753166 102753166 C T C10orf2 Missense_Mutation p.P652S 0.23 tolerated(0.27) benign(0.001) TCGA-GN-A266-06 10 103384520 103384520 C T FBXW4 Missense_Mutation p.R273K 0.16 tolerated(0.17) benign(0.013) TCGA-GN-A266-06 10 103433355 103433355 G A FBXW4 Silent p.F144F 0.15 TCGA-GN-A266-06 10 103900612 103900612 C T PPRC1 Missense_Mutation p.P783S 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A266-06 10 103921612 103921612 C T NOLC1 Missense_Mutation p.P624L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 10 104176737 104176737 C T PSD Missense_Mutation p.R20Q 0.38 tolerated_low_confidence(0.07) probably_damaging(0.968) TCGA-GN-A266-06 10 104245387 104245387 G A ACTR1A Missense_Mutation p.S140F 0.27 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 10 104309776 104309776 C T SUFU Missense_Mutation p.R123C 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 10 104416605 104416605 C T TRIM8 Missense_Mutation p.P384S 0.21 tolerated_low_confidence(0.26) probably_damaging(0.916) TCGA-GN-A266-06 10 104679674 104679674 C T CNNM2 Silent p.T479T 0.27 TCGA-GN-A266-06 10 105005743 105005743 G T RPEL1 5'UTR 0.26 TCGA-GN-A266-06 10 105005843 105005843 G A RPEL1 Silent p.G30G 0.28 TCGA-GN-A266-06 10 105048317 105048317 C T INA Missense_Mutation p.S464F 0.27 deleterious(0) possibly_damaging(0.675) TCGA-GN-A266-06 10 105162877 105162877 C T PDCD11 Silent p.S79S 0.26 TCGA-GN-A266-06 10 105349906 105349906 C T NEURL1 Missense_Mutation p.S501L 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 10 105819949 105819949 C T COL17A1 Missense_Mutation p.E357K 0.27 unknown(0) TCGA-GN-A266-06 10 105923860 105923860 C T WDR96 Missense_Mutation p.D1080N 0.24 tolerated(0.16) benign(0.238) TCGA-GN-A266-06 10 106074331 106074331 G A ITPRIP Silent p.A493A 0.28 TCGA-GN-A266-06 10 106209871 106209871 G A CCDC147 Missense_Mutation p.E807K 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-GN-A266-06 10 106865208 106865208 G A SORCS3 Missense_Mutation p.G383R 0.34 tolerated(0.34) benign(0.009) TCGA-GN-A266-06 10 106865209 106865209 G A SORCS3 Missense_Mutation p.G383E 0.33 tolerated(0.27) benign(0.165) TCGA-GN-A266-06 10 106865239 106865239 C T SORCS3 Missense_Mutation p.S393F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A266-06 10 106907396 106907396 G A SORCS3 Missense_Mutation p.D442N 0.28 tolerated(0.08) benign(0.018) TCGA-GN-A266-06 10 106907543 106907543 G A SORCS3 Missense_Mutation p.E491K 0.22 deleterious(0) benign(0.09) TCGA-GN-A266-06 10 106974266 106974266 G A SORCS3 Silent p.Q814Q 0.27 TCGA-GN-A266-06 10 107022213 107022213 G A SORCS3 Missense_Mutation p.E1190K 0.25 deleterious(0) possibly_damaging(0.627) TCGA-GN-A266-06 10 108366964 108366964 G A SORCS1 Missense_Mutation p.P1042L 0.23 tolerated(0.42) benign(0.002) TCGA-GN-A266-06 10 108367054 108367054 G A SORCS1 Missense_Mutation p.A1012V 0.20 tolerated(1) benign(0.013) TCGA-GN-A266-06 10 108427498 108427498 G A SORCS1 Missense_Mutation p.S751F 0.24 deleterious(0.02) possibly_damaging(0.737) TCGA-GN-A266-06 10 112645010 112645010 G A PDCD4 Splice_Site p.X148_splice 0.28 TCGA-GN-A266-06 10 114169281 114169281 G A ACSL5 Silent p.V239V 0.19 TCGA-GN-A266-06 10 114172982 114172982 C T ACSL5 Missense_Mutation p.R390W 0.16 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 10 114176735 114176735 C T ACSL5 Silent p.I447I 0.23 TCGA-GN-A266-06 10 11505080 11505080 G A USP6NL Missense_Mutation p.P633L 0.18 tolerated_low_confidence(0.16) benign(0.008) TCGA-GN-A266-06 10 115804525 115804525 G A ADRB1 Missense_Mutation p.D212N 0.17 tolerated(0.24) benign(0.075) TCGA-GN-A266-06 10 115922739 115922739 G A C10orf118 Missense_Mutation p.P97S 0.25 tolerated_low_confidence(0.14) benign(0.035) TCGA-GN-A266-06 10 116045715 116045715 G A VWA2 Missense_Mutation p.E339K 0.31 deleterious(0.01) possibly_damaging(0.782) TCGA-GN-A266-06 10 116067585 116067585 C T AFAP1L2 Missense_Mutation p.E351K 0.25 deleterious(0) possibly_damaging(0.493) TCGA-GN-A266-06 10 116919962 116919962 C T ATRNL1 Nonsense_Mutation p.Q331* 0.29 TCGA-GN-A266-06 10 117308974 117308974 C T ATRNL1 Silent p.F1241F 0.34 TCGA-GN-A266-06 10 1175348 1175348 C T WDR37 3'UTR 0.19 TCGA-GN-A266-06 10 117884979 117884979 T C GFRA1 Missense_Mutation p.I175V 0.27 tolerated(0.12) benign(0.157) TCGA-GN-A266-06 10 118313319 118313319 G A PNLIP Silent p.R180R 0.21 TCGA-GN-A266-06 10 119044546 119044546 G A PDZD8 Silent p.P566P 0.32 TCGA-GN-A266-06 10 120919252 120919252 G A SFXN4 Silent p.F116F 0.21 TCGA-GN-A266-06 10 121429480 121429480 C T BAG3 Missense_Mutation p.H100Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 10 123970371 123970371 C T TACC2 Missense_Mutation p.P2144L 0.13 probably_damaging(0.99) TCGA-GN-A266-06 10 124152833 124152833 C T PLEKHA1 Silent p.F39F 0.16 TCGA-GN-A266-06 10 124348470 124348470 C T DMBT1 Silent p.S598S 0.23 TCGA-GN-A266-06 10 124457516 124457516 G A C10orf120 Silent p.F247F 0.13 TCGA-GN-A266-06 10 124597036 124597036 C T CUZD1 Silent p.L161L 0.19 TCGA-GN-A266-06 10 124600823 124600823 C T CUZD1 Missense_Mutation p.S35N 0.09 tolerated(0.09) benign(0.002) TCGA-GN-A266-06 10 1279754 1279754 G A ADARB2 Silent p.F465F 0.32 TCGA-GN-A266-06 10 12803023 12803023 C T CAMK1D Missense_Mutation p.R126C 0.24 deleterious(0.03) benign(0.081) TCGA-GN-A266-06 10 12866547 12866547 G A CAMK1D Nonsense_Mutation p.W306* 0.22 TCGA-GN-A266-06 10 129903183 129903183 C T MKI67 Silent p.K2307K 0.13 TCGA-GN-A266-06 10 134219344 134219344 C T PWWP2B Missense_Mutation p.S447L 0.38 tolerated(0.39) benign(0.006) TCGA-GN-A266-06 10 134540383 134540383 C T INPP5A Missense_Mutation p.R236W 0.25 deleterious(0) possibly_damaging(0.523) TCGA-GN-A266-06 10 134647602 134647602 C T TTC40 Missense_Mutation p.D2298N 0.22 deleterious(0.04) benign(0.444) TCGA-GN-A266-06 10 135020700 135020700 C T KNDC1 Silent p.I1213I 0.22 TCGA-GN-A266-06 10 135367795 135367795 C T SYCE1 3'Flank 0.28 TCGA-GN-A266-06 10 135372435 135372435 C T SYCE1 Missense_Mutation p.D73N 0.16 deleterious(0) possibly_damaging(0.466) TCGA-GN-A266-06 10 15255590 15255590 G A FAM171A1 Missense_Mutation p.S666F 0.21 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 10 15614330 15614330 G A ITGA8 Silent p.I839I 0.17 TCGA-GN-A266-06 10 15646320 15646320 G A ITGA8 Missense_Mutation p.H669Y 0.18 tolerated(1) benign(0.02) TCGA-GN-A266-06 10 16948208 16948208 G A CUBN Nonsense_Mutation p.R2636* 0.26 TCGA-GN-A266-06 10 17061853 17061853 G A CUBN Nonsense_Mutation p.Q1383* 0.27 TCGA-GN-A266-06 10 20436791 20436791 C T PLXDC2 Missense_Mutation p.T248I 0.25 deleterious(0.03) possibly_damaging(0.885) TCGA-GN-A266-06 10 21178817 21178817 G A NEBL Missense_Mutation p.P72L 0.24 tolerated(0.1) benign(0.228) TCGA-GN-A266-06 10 21435307 21435307 G A C10orf113 Missense_Mutation p.S44F 0.27 tolerated_low_confidence(0.36) benign(0.042) TCGA-GN-A266-06 10 22896936 22896936 G A PIP4K2A Missense_Mutation p.H87Y 0.35 deleterious(0) possibly_damaging(0.845) TCGA-GN-A266-06 10 23482809 23482809 G A PTF1A Missense_Mutation p.E321K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 10 24722007 24722007 C T KIAA1217 Missense_Mutation p.L213F 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 10 24802349 24802349 C T KIAA1217 Silent p.I721I 0.23 TCGA-GN-A266-06 10 24922358 24922358 G A ARHGAP21 Missense_Mutation p.S138F 0.30 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 10 26315456 26315456 G A MYO3A Silent p.K316K 0.31 TCGA-GN-A266-06 10 26465757 26465757 C T MYO3A Missense_Mutation p.S1474F 0.20 tolerated_low_confidence(0.18) benign(0.372) TCGA-GN-A266-06 10 27538404 27538404 G A RP11-85G18.6 Intron 0.20 TCGA-GN-A266-06 10 27539056 27539056 C T RP11-85G18.6 RNA 0.20 TCGA-GN-A266-06 10 27703235 27703235 G A PTCHD3 5'UTR 0.36 TCGA-GN-A266-06 10 28224012 28224012 C T ARMC4 Missense_Mutation p.G808R 0.25 deleterious(0.05) possibly_damaging(0.903) TCGA-GN-A266-06 10 30336586 30336586 C T KIAA1462 Silent p.A52A 0.24 TCGA-GN-A266-06 10 30900766 30900766 C T LYZL2 3'UTR 0.27 TCGA-GN-A266-06 10 31810601 31810601 G C ZEB1 Missense_Mutation p.D781H 0.32 tolerated(0.07) possibly_damaging(0.873) TCGA-GN-A266-06 10 31812998 31812998 C T ZEB1 Silent p.F914F 0.18 TCGA-GN-A266-06 10 3190266 3190266 G A PITRM1 Intron 0.34 TCGA-GN-A266-06 10 32560821 32560821 C T EPC1 Missense_Mutation p.S700N 0.16 tolerated(0.1) probably_damaging(0.977) TCGA-GN-A266-06 10 33481252 33481252 C T NRP1 Nonsense_Mutation p.W673* 0.23 TCGA-GN-A266-06 10 33502411 33502411 C T NRP1 Missense_Mutation p.R506Q 0.24 tolerated(0.24) benign(0.271) TCGA-GN-A266-06 10 33502446 33502446 G A NRP1 Silent p.I494I 0.22 TCGA-GN-A266-06 10 34759087 34759087 G A PARD3 Missense_Mutation p.P170S 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-GN-A266-06 10 35819114 35819114 C T CCNY Silent p.F174F 0.28 TCGA-GN-A266-06 10 37486386 37486386 G A ANKRD30A Silent p.K842K 0.11 TCGA-GN-A266-06 10 43088408 43088408 G A ZNF33B Missense_Mutation p.P664S 0.16 tolerated(0.2) probably_damaging(0.999) TCGA-GN-A266-06 10 43319084 43319084 C T BMS1 Missense_Mutation p.P1103L 0.19 deleterious(0.01) benign(0.395) TCGA-GN-A266-06 10 46999410 46999410 C T GPRIN2 Missense_Mutation p.A177V 0.09 deleterious(0.04) benign(0.197) TCGA-GN-A266-06 10 47087060 47087060 C T NPY4R Missense_Mutation p.L93F 0.10 tolerated(0.61) benign(0.004) TCGA-GN-A266-06 10 47087788 47087788 C T NPY4R Silent p.A335A 0.11 TCGA-GN-A266-06 10 48387840 48387840 C T RBP3 Missense_Mutation p.G1013E 0.17 tolerated(0.23) probably_damaging(0.931) TCGA-GN-A266-06 10 48387922 48387922 C T RBP3 Missense_Mutation p.G986R 0.20 tolerated(0.06) probably_damaging(0.953) TCGA-GN-A266-06 10 48387923 48387923 C T RBP3 Silent p.L985L 0.19 TCGA-GN-A266-06 10 48389017 48389017 C T RBP3 Missense_Mutation p.E621K 0.32 tolerated(0.05) benign(0.141) TCGA-GN-A266-06 10 48390152 48390152 G A RBP3 Silent p.I242I 0.24 TCGA-GN-A266-06 10 48414222 48414222 G A GDF2 Missense_Mutation p.R216W 0.24 deleterious(0) probably_damaging(0.958) TCGA-GN-A266-06 10 49687790 49687790 C T ARHGAP22 Missense_Mutation p.E114K 0.43 deleterious(0.01) benign(0.373) TCGA-GN-A266-06 10 50121353 50121353 C T LRRC18 Intron 0.28 TCGA-GN-A266-06 10 50255039 50255039 T A VSTM4 Nonsense_Mutation p.K276* 0.26 TCGA-GN-A266-06 10 50311757 50311757 C T VSTM4 Intron 0.18 TCGA-GN-A266-06 10 50531678 50531678 G A C10orf71 Missense_Mutation p.G363E 0.19 tolerated(0.39) benign(0.251) TCGA-GN-A266-06 10 50701288 50701288 A G ERCC6 Silent p.L566L 0.17 TCGA-GN-A266-06 10 50916662 50916662 G A C10orf53 Silent p.%3D 0.18 TCGA-GN-A266-06 10 52003094 52003094 G A ASAH2 Silent p.S126S 0.21 TCGA-GN-A266-06 10 5238818 5238818 G A AKR1C4 5'UTR 0.25 TCGA-GN-A266-06 10 5254576 5254576 A G AKR1C4 Intron 0.30 TCGA-GN-A266-06 10 52573619 52573619 G A A1CF Nonsense_Mutation p.Q449* 0.26 TCGA-GN-A266-06 10 52573620 52573620 G A A1CF Silent p.P448P 0.26 TCGA-GN-A266-06 10 54040643 54040643 C T PRKG1 Missense_Mutation p.L500F 0.28 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 10 54040660 54040660 C T PRKG1 Silent p.L505L 0.30 TCGA-GN-A266-06 10 5541241 5541241 G A CALML5 Missense_Mutation p.S54F 0.20 deleterious(0) possibly_damaging(0.878) TCGA-GN-A266-06 10 55569166 55569166 C T PCDH15 Missense_Mutation p.M482I 0.18 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 10 55582527 55582527 C T PCDH15 Silent p.L1655L 0.23 TCGA-GN-A266-06 10 5567256 5567256 C T CALML3 Silent p.L70L 0.44 TCGA-GN-A266-06 10 5690985 5690985 G A ASB13 Silent p.H155H 0.21 TCGA-GN-A266-06 10 5690986 5690986 T A ASB13 Missense_Mutation p.H155L 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 10 60128542 60128542 C T UBE2D1 3'UTR 0.26 TCGA-GN-A266-06 10 61413485 61413485 C T SLC16A9 Silent p.G433G 0.43 TCGA-GN-A266-06 10 61829254 61829254 G A ANK3 Silent p.S3795S 0.16 TCGA-GN-A266-06 10 61831637 61831637 T G ANK3 Missense_Mutation p.K3001T 0.26 benign(0.029) TCGA-GN-A266-06 10 61831953 61831953 C T ANK3 Missense_Mutation p.E2896K 0.17 benign(0.021) TCGA-GN-A266-06 10 61832650 61832650 C T ANK3 Silent p.E2663E 0.23 TCGA-GN-A266-06 10 61834328 61834328 C T ANK3 Missense_Mutation p.G2104E 0.26 probably_damaging(0.998) TCGA-GN-A266-06 10 64136000 64136000 C T ZNF365 Silent p.S16S 0.20 TCGA-GN-A266-06 10 64968329 64968329 G A JMJD1C Missense_Mutation p.P1034S 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 10 6540414 6540414 G A PRKCQ Silent p.F162F 0.19 TCGA-GN-A266-06 10 67862927 67862927 C T CTNNA3 Silent p.G655G 0.35 TCGA-GN-A266-06 10 68526108 68526108 G A CTNNA3 Missense_Mutation p.L399F 0.18 deleterious(0) possibly_damaging(0.856) TCGA-GN-A266-06 10 68688078 68688078 C T LRRTM3 Silent p.S468S 0.23 TCGA-GN-A266-06 10 69726449 69726449 G A HERC4 Silent p.A639A 0.50 TCGA-GN-A266-06 10 69902759 69902759 A T MYPN Missense_Mutation p.N322I 0.18 deleterious(0.01) possibly_damaging(0.555) TCGA-GN-A266-06 10 69934371 69934371 C T MYPN Missense_Mutation p.P841L 0.31 tolerated(0.11) probably_damaging(0.991) TCGA-GN-A266-06 10 70248224 70248224 G A SLC25A16 Missense_Mutation p.S258F 0.24 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 10 70509354 70509354 C T CCAR1 Missense_Mutation p.P344S 0.39 deleterious(0.01) probably_damaging(0.968) TCGA-GN-A266-06 10 70775992 70775992 C T KIAA1279 Silent p.P562P 0.18 TCGA-GN-A266-06 10 71174784 71174784 G A TACR2 Silent p.F168F 0.22 TCGA-GN-A266-06 10 7214518 7214518 G A SFMBT2 Missense_Mutation p.S697F 0.25 tolerated(0.08) possibly_damaging(0.729) TCGA-GN-A266-06 10 72292515 72292515 C T PALD1 Missense_Mutation p.L258F 0.22 deleterious(0.05) possibly_damaging(0.66) TCGA-GN-A266-06 10 72298652 72298652 A C PALD1 Missense_Mutation p.E486A 0.18 tolerated(1) benign(0.001) TCGA-GN-A266-06 10 72520494 72520494 G A ADAMTS14 Missense_Mutation p.G1189E 0.24 tolerated_low_confidence(0.33) benign(0.007) TCGA-GN-A266-06 10 72534976 72534976 G A TBATA Silent p.I247I 0.17 TCGA-GN-A266-06 10 7326167 7326167 G A SFMBT2 Intron 0.37 TCGA-GN-A266-06 10 73464754 73464754 C T CDH23 Silent p.I532I 0.18 TCGA-GN-A266-06 10 74653550 74653550 C T OIT3 5'UTR 0.24 TCGA-GN-A266-06 10 75529378 75529378 C T SEC24C Missense_Mutation p.R857W 0.31 tolerated(0.11) benign(0.284) TCGA-GN-A266-06 10 7679266 7679266 C T ITIH5 Missense_Mutation p.E193K 0.13 deleterious(0) possibly_damaging(0.864) TCGA-GN-A266-06 10 7679298 7679298 G A ITIH5 Missense_Mutation p.S182F 0.20 deleterious(0) benign(0.162) TCGA-GN-A266-06 10 76855365 76855365 C T DUSP13 Missense_Mutation p.R171Q 0.27 tolerated(0.68) benign(0.004) TCGA-GN-A266-06 10 76867938 76867938 C T DUSP13 Intron 0.27 TCGA-GN-A266-06 10 76995454 76995454 G A COMTD1 Missense_Mutation p.P48S 0.30 tolerated(0.26) benign(0.332) TCGA-GN-A266-06 10 79554636 79554636 G A DLG5 Silent p.F1839F 0.25 TCGA-GN-A266-06 10 81318678 81318678 C T SFTPA2 Missense_Mutation p.G86R 0.30 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 10 82126466 82126466 C T DYDC2 Missense_Mutation p.S112F 0.22 deleterious(0.01) possibly_damaging(0.501) TCGA-GN-A266-06 10 84711289 84711289 C T NRG3 Silent p.I373I 0.25 TCGA-GN-A266-06 10 85973023 85973023 C T CDHR1 Silent p.S653S 0.20 TCGA-GN-A266-06 10 85984737 85984737 C T LRIT2 Missense_Mutation p.E82K 0.28 tolerated(0.07) benign(0.097) TCGA-GN-A266-06 10 87484213 87484213 C T GRID1 Missense_Mutation p.R585K 0.52 tolerated(0.47) probably_damaging(0.996) TCGA-GN-A266-06 10 87487638 87487638 C T GRID1 Missense_Mutation p.G503R 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 10 88418308 88418308 C T OPN4 Silent p.I175I 0.24 TCGA-GN-A266-06 10 90427138 90427138 C T LIPF Silent p.S38S 0.18 TCGA-GN-A266-06 10 90429616 90429616 G A LIPF Missense_Mutation p.D159N 0.19 deleterious(0.01) probably_damaging(0.933) TCGA-GN-A266-06 10 91474755 91474755 C T KIF20B Silent p.S252S 0.24 TCGA-GN-A266-06 10 91503565 91503565 G A KIF20B Missense_Mutation p.V1266I 0.20 tolerated(0.26) benign(0.034) TCGA-GN-A266-06 10 92509065 92509065 G A HTR7 Missense_Mutation p.P276S 0.21 tolerated(0.61) benign(0.012) TCGA-GN-A266-06 10 93841190 93841190 C T CPEB3 Missense_Mutation p.E586K 0.17 tolerated(0.09) probably_damaging(0.921) TCGA-GN-A266-06 10 95556849 95556849 C T LGI1 Silent p.I321I 0.13 TCGA-GN-A266-06 10 95791266 95791266 G A PLCE1 Missense_Mutation p.E155K 0.33 tolerated_low_confidence(0.33) benign(0.015) TCGA-GN-A266-06 10 95892155 95892155 G A PLCE1 Silent p.L477L 0.15 TCGA-GN-A266-06 10 96025694 96025694 C T PLCE1 Silent p.S1420S 0.29 TCGA-GN-A266-06 10 96484114 96484114 G T CYP2C18 Nonsense_Mutation p.E325* 0.18 TCGA-GN-A266-06 10 96522541 96522541 G A CYP2C19 Missense_Mutation p.G27R 0.28 tolerated(0.25) benign(0.033) TCGA-GN-A266-06 10 96522549 96522549 C T CYP2C19 Silent p.L29L 0.26 TCGA-GN-A266-06 10 96580331 96580331 G A CYP2C19 Missense_Mutation p.E300K 0.31 deleterious(0.02) possibly_damaging(0.777) TCGA-GN-A266-06 10 96967012 96967012 C T C10orf129 Missense_Mutation p.R151C 0.22 deleterious(0.04) benign(0.263) TCGA-GN-A266-06 10 97371130 97371130 G A ALDH18A1 Nonsense_Mutation p.R665* 0.23 TCGA-GN-A266-06 10 97423933 97423933 G A TCTN3 Missense_Mutation p.P572L 0.25 deleterious(0.02) possibly_damaging(0.742) TCGA-GN-A266-06 10 97976457 97976457 C T BLNK Missense_Mutation p.E187K 0.30 deleterious(0.02) benign(0.008) TCGA-GN-A266-06 10 98118771 98118771 G A OPALIN 5'UTR 0.24 TCGA-GN-A266-06 10 98145829 98145829 C T TLL2 Missense_Mutation p.E666K 0.22 deleterious(0.01) possibly_damaging(0.761) TCGA-GN-A266-06 10 98182396 98182396 C T TLL2 Missense_Mutation p.E243K 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A266-06 10 98376449 98376449 C T PIK3AP1 Missense_Mutation p.R654K 0.21 deleterious(0.01) possibly_damaging(0.837) TCGA-GN-A266-06 10 98764484 98764484 C T SLIT1 Missense_Mutation p.D1226N 0.22 deleterious(0.02) probably_damaging(0.915) TCGA-GN-A266-06 10 98995003 98995003 G A ARHGAP19 Missense_Mutation p.R419C 0.18 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 10 99023382 99023382 C A ARHGAP19 Missense_Mutation p.L136F 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 11 100095421 100095421 C T CNTN5 Intron 0.24 TCGA-GN-A266-06 11 100126527 100126527 G A CNTN5 Missense_Mutation p.E681K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 11 100221454 100221454 C T CNTN5 Missense_Mutation p.H1018Y 0.16 tolerated(0.11) possibly_damaging(0.585) TCGA-GN-A266-06 11 101815013 101815013 G A KIAA1377 Missense_Mutation p.R89Q 0.40 tolerated(0.21) benign(0.286) TCGA-GN-A266-06 11 102395787 102395787 C T MMP7 Missense_Mutation p.D165N 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 102575416 102575416 C T MMP27 Missense_Mutation p.E65K 0.24 tolerated(0.08) benign(0.028) TCGA-GN-A266-06 11 102665887 102665887 G A MMP1 Intron 0.10 TCGA-GN-A266-06 11 102713310 102713310 C T MMP3 Silent p.R117R 0.30 TCGA-GN-A266-06 11 1027764 1027764 G A MUC6 Silent p.A634A 0.27 TCGA-GN-A266-06 11 102819836 102819836 C T MMP13 Silent p.T323T 0.31 TCGA-GN-A266-06 11 1031885 1031885 G A MUC6 Missense_Mutation p.S95L 0.32 unknown(0) TCGA-GN-A266-06 11 103870929 103870929 C T PDGFD Missense_Mutation p.G60E 0.35 tolerated(0.49) benign(0.181) TCGA-GN-A266-06 11 10506453 10506453 G A AMPD3 Missense_Mutation p.G235R 0.46 tolerated(0.23) benign(0.221) TCGA-GN-A266-06 11 105795202 105795202 G A GRIA4 Missense_Mutation p.M518I 0.37 deleterious(0) possibly_damaging(0.817) TCGA-GN-A266-06 11 106558318 106558318 G A GUCY1A2 Missense_Mutation p.S750F 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 11 107578660 107578660 C T SLN 5'UTR 0.36 TCGA-GN-A266-06 11 107925391 107925391 C T CUL5 Missense_Mutation p.P191S 0.22 tolerated(0.9) benign(0) TCGA-GN-A266-06 11 108159737 108159737 T C ATM Silent p.F1381F 0.26 TCGA-GN-A266-06 11 108163385 108163385 C T ATM Silent p.S1492S 0.19 TCGA-GN-A266-06 11 108577504 108577504 C T DDX10 Missense_Mutation p.P421L 0.14 deleterious(0) possibly_damaging(0.887) TCGA-GN-A266-06 11 1087466 1087466 G A MUC2 Missense_Mutation p.E1073K 0.31 probably_damaging(0.939) TCGA-GN-A266-06 11 1093693 1093693 C T MUC2 Missense_Mutation p.H1838Y 0.35 unknown(0) TCGA-GN-A266-06 11 110450259 110450259 C T ARHGAP20 Missense_Mutation p.M1137I 0.15 tolerated_low_confidence(0.68) benign(0) TCGA-GN-A266-06 11 110456968 110456968 C T ARHGAP20 Missense_Mutation p.D463N 0.17 tolerated(0.24) benign(0.38) TCGA-GN-A266-06 11 110461427 110461427 C T ARHGAP20 Missense_Mutation p.G417E 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 111156412 111156412 T C C11orf53 Missense_Mutation p.L115P 0.23 deleterious(0) benign(0.082) TCGA-GN-A266-06 11 111225262 111225262 C T POU2AF1 Silent p.L165L 0.15 TCGA-GN-A266-06 11 111749799 111749799 G A FDXACB1 Silent p.L20L 0.28 TCGA-GN-A266-06 11 112085548 112085548 C T BCO2 Missense_Mutation p.P466S 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 113283471 113283471 G A DRD2 Silent p.L315L 0.35 TCGA-GN-A266-06 11 113650664 113650664 G A CLDN25 Silent p.G49G 0.28 TCGA-GN-A266-06 11 113650814 113650814 C T CLDN25 Silent p.S99S 0.35 TCGA-GN-A266-06 11 114168875 114168875 G A NNMT Silent p.G119G 0.17 TCGA-GN-A266-06 11 116661636 116661636 C T APOA5 Silent p.V103V 0.08 TCGA-GN-A266-06 11 116732000 116732000 G A SIK3 Silent p.I699I 0.13 TCGA-GN-A266-06 11 117299164 117299164 C T DSCAML1 Silent p.G2074G 0.47 TCGA-GN-A266-06 11 117301631 117301631 G A DSCAML1 Silent p.I1891I 0.13 TCGA-GN-A266-06 11 117870289 117870289 T A IL10RA Missense_Mutation p.L557H 0.61 deleterious(0.02) benign(0.188) TCGA-GN-A266-06 11 118074198 118074198 C A AMICA1 Silent p.G239G 0.48 TCGA-GN-A266-06 11 118513099 118513099 C T PHLDB1 Missense_Mutation p.S955F 0.38 tolerated(0.23) benign(0.002) TCGA-GN-A266-06 11 118769796 118769796 G A BCL9L Silent p.P1276P 0.35 TCGA-GN-A266-06 11 119020882 119020882 C T ABCG4 Silent p.S69S 0.42 TCGA-GN-A266-06 11 119050756 119050756 C T NLRX1 Missense_Mutation p.L676F 0.22 tolerated(0.07) benign(0.023) TCGA-GN-A266-06 11 119998049 119998049 G A TRIM29 Silent p.L377L 0.50 TCGA-GN-A266-06 11 119998247 119998247 C T TRIM29 Missense_Mutation p.E311K 0.45 deleterious(0.03) possibly_damaging(0.593) TCGA-GN-A266-06 11 120979942 120979942 C T TECTA Missense_Mutation p.S74F 0.34 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 11 120979979 120979979 C T TECTA Silent p.S86S 0.26 TCGA-GN-A266-06 11 121061511 121061511 C T TECTA Missense_Mutation p.S2155L 0.26 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-GN-A266-06 11 121393342 121393342 C T SORL1 Silent p.L484L 0.37 TCGA-GN-A266-06 11 121414293 121414293 C T SORL1 Silent p.F574F 0.11 TCGA-GN-A266-06 11 121437754 121437754 C T SORL1 Missense_Mutation p.P1052L 0.20 tolerated(0.15) benign(0.279) TCGA-GN-A266-06 11 121457003 121457003 G C SORL1 Missense_Mutation p.R1260P 0.09 tolerated(0.36) benign(0.252) TCGA-GN-A266-06 11 121489489 121489489 G A SORL1 Missense_Mutation p.G1871S 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-GN-A266-06 11 122722430 122722430 C T CRTAM Missense_Mutation p.H75Y 0.39 deleterious(0.01) possibly_damaging(0.833) TCGA-GN-A266-06 11 12313749 12313749 C T MICALCL Missense_Mutation p.P12S 0.44 tolerated_low_confidence(0.15) unknown(0) TCGA-GN-A266-06 11 12315394 12315394 G A MICALCL Missense_Mutation p.R139K 0.46 tolerated(0.28) benign(0.022) TCGA-GN-A266-06 11 123624392 123624392 G A OR6X1 Missense_Mutation p.L279F 0.39 deleterious(0) benign(0.073) TCGA-GN-A266-06 11 123753976 123753976 C T TMEM225 Missense_Mutation p.E183K 0.13 tolerated(0.8) possibly_damaging(0.636) TCGA-GN-A266-06 11 123810525 123810525 T G OR4D5 Missense_Mutation p.F68V 0.09 tolerated(0.47) probably_damaging(0.968) TCGA-GN-A266-06 11 123813896 123813896 G A OR6T1 Missense_Mutation p.S217F 0.09 deleterious(0.05) possibly_damaging(0.801) TCGA-GN-A266-06 11 123847434 123847434 C T OR10S1 Missense_Mutation p.R322Q 0.41 tolerated(0.68) benign(0.001) TCGA-GN-A266-06 11 123886279 123886279 G A OR10G4 5'Flank 0.31 TCGA-GN-A266-06 11 123900509 123900509 C T OR10G8 Silent p.F60F 0.11 TCGA-GN-A266-06 11 124007909 124007909 C T VWA5A Missense_Mutation p.H605Y 0.44 tolerated(0.45) benign(0.003) TCGA-GN-A266-06 11 124120530 124120530 G A OR8G1 Silent p.V36V 0.09 TCGA-GN-A266-06 11 124134920 124134920 C T OR8G5 Silent p.F66F 0.46 TCGA-GN-A266-06 11 124189535 124189535 G A OR8D2 Silent p.L187L 0.47 TCGA-GN-A266-06 11 124189845 124189845 C T OR8D2 Silent p.V83V 0.14 TCGA-GN-A266-06 11 124440379 124440379 C T OR8A1 Missense_Mutation p.R139C 0.12 deleterious(0.02) benign(0.082) TCGA-GN-A266-06 11 124761258 124761258 C T ROBO4 Missense_Mutation p.G629R 0.11 tolerated(0.07) benign(0.194) TCGA-GN-A266-06 11 124789832 124789832 C T HEPN1 Silent p.S62S 0.15 TCGA-GN-A266-06 11 124951352 124951352 C T SLC37A2 Missense_Mutation p.H244Y 0.56 tolerated(0.15) benign(0.373) TCGA-GN-A266-06 11 12530148 12530148 C T PARVA Silent p.L265L 0.18 TCGA-GN-A266-06 11 125550757 125550757 C T ACRV1 5'UTR 0.43 TCGA-GN-A266-06 11 128709249 128709249 G A KCNJ1 Missense_Mutation p.P316L 0.48 deleterious(0) possibly_damaging(0.773) TCGA-GN-A266-06 11 128774390 128774390 G A C11orf45 Silent p.I24I 0.09 TCGA-GN-A266-06 11 128843156 128843156 C T ARHGAP32 Missense_Mutation p.G1068E 0.08 tolerated_low_confidence(0.65) benign(0.016) TCGA-GN-A266-06 11 12903501 12903501 C T TEAD1 Missense_Mutation p.P191S 0.39 tolerated(0.63) benign(0.001) TCGA-GN-A266-06 11 130066489 130066489 C T ST14 Silent p.F416F 0.50 TCGA-GN-A266-06 11 130281470 130281470 G A ADAMTS8 Missense_Mutation p.P531L 0.13 tolerated(0.26) benign(0.014) TCGA-GN-A266-06 11 130288974 130288974 C T ADAMTS8 Missense_Mutation p.D312N 0.09 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 132205055 132205055 C T NTM 3'UTR 0.43 TCGA-GN-A266-06 11 134183908 134183908 G A GLB1L3 Missense_Mutation p.M551I 0.47 tolerated(0.13) benign(0.065) TCGA-GN-A266-06 11 134214955 134214955 C T GLB1L2 Silent p.I127I 0.19 TCGA-GN-A266-06 11 134226237 134226237 G A GLB1L2 Missense_Mutation p.E201K 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-GN-A266-06 11 134252840 134252840 C T B3GAT1 Missense_Mutation p.E228K 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-GN-A266-06 11 14891083 14891083 G A PDE3B Nonsense_Mutation p.W1072* 0.32 TCGA-GN-A266-06 11 1619005 1619005 T C KRTAP5-2 Missense_Mutation p.K159R 0.21 tolerated_low_confidence(0.51) unknown(0) TCGA-GN-A266-06 11 1643046 1643046 G A KRTAP5-4 Missense_Mutation p.S93F 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A266-06 11 1718958 1718958 C T KRTAP5-6 3'UTR 0.34 TCGA-GN-A266-06 11 17436059 17436059 C T ABCC8 Missense_Mutation p.R797Q 0.16 deleterious(0) possibly_damaging(0.842) TCGA-GN-A266-06 11 17438479 17438479 G A ABCC8 Silent p.P751P 0.32 TCGA-GN-A266-06 11 17757825 17757825 C T KCNC1 Silent p.A92A 0.34 TCGA-GN-A266-06 11 18195409 18195409 C T MRGPRX4 Silent p.I202I 0.36 TCGA-GN-A266-06 11 18232048 18232048 G A RP11-113D6.10 3'UTR 0.32 TCGA-GN-A266-06 11 18451403 18451403 C T LDHC Missense_Mutation p.P122S 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-GN-A266-06 11 19246255 19246255 G C E2F8 Missense_Mutation p.L852V 0.16 tolerated(0.34) benign(0.242) TCGA-GN-A266-06 11 20486061 20486061 C T PRMT3 Missense_Mutation p.T439I 0.30 benign(0.001) TCGA-GN-A266-06 11 20636293 20636293 C T SLC6A5 Missense_Mutation p.P352S 0.32 tolerated(0.13) benign(0.029) TCGA-GN-A266-06 11 21250883 21250883 G A NELL1 Missense_Mutation p.D478N 0.23 deleterious(0.04) possibly_damaging(0.504) TCGA-GN-A266-06 11 2156695 2156695 G A IGF2 Missense_Mutation p.S76L 0.27 tolerated(0.35) benign(0.016) TCGA-GN-A266-06 11 22279281 22279281 G A ANO5 Missense_Mutation p.G463E 0.35 tolerated(0.15) possibly_damaging(0.529) TCGA-GN-A266-06 11 22381008 22381008 C T SLC17A6 Missense_Mutation p.P170S 0.34 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 11 22384351 22384351 C T SLC17A6 Missense_Mutation p.S243F 0.30 deleterious(0.03) benign(0.049) TCGA-GN-A266-06 11 22696358 22696358 C T GAS2 Intron 0.33 TCGA-GN-A266-06 11 24936033 24936033 C T LUZP2 Silent p.I157I 0.24 TCGA-GN-A266-06 11 25004772 25004772 C T LUZP2 Missense_Mutation p.P233L 0.38 deleterious(0.02) benign(0.009) TCGA-GN-A266-06 11 25100255 25100255 T A LUZP2 3'UTR 0.44 TCGA-GN-A266-06 11 251895 251895 C T PSMD13 Missense_Mutation p.H334Y 0.27 tolerated(0.08) benign(0.022) TCGA-GN-A266-06 11 26743205 26743205 G A SLC5A12 Silent p.F19F 0.33 TCGA-GN-A266-06 11 27016343 27016343 G A FIBIN Silent p.Q90Q 0.33 TCGA-GN-A266-06 11 27016391 27016391 C T FIBIN Silent p.S106S 0.11 TCGA-GN-A266-06 11 27679880 27679880 G A BDNF Missense_Mutation p.R160W 0.18 deleterious(0.01) possibly_damaging(0.738) TCGA-GN-A266-06 11 3115047 3115047 T C OSBPL5 Missense_Mutation p.T580A 0.33 tolerated(0.39) benign(0.026) TCGA-GN-A266-06 11 31312362 31312362 C T DCDC1 Missense_Mutation p.M264I 0.33 tolerated(0.06) benign(0.234) TCGA-GN-A266-06 11 32119928 32119928 C T RCN1 Missense_Mutation p.H161Y 0.16 deleterious(0.03) benign(0.222) TCGA-GN-A266-06 11 32410512 32410512 C T WT1 3'UTR 0.44 TCGA-GN-A266-06 11 32439132 32439132 G A WT1 Missense_Mutation p.T314I 0.30 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-GN-A266-06 11 3249928 3249928 G C MRGPRE Silent p.L33L 0.33 TCGA-GN-A266-06 11 33163455 33163455 C T CSTF3 Nonsense_Mutation p.W35* 0.13 TCGA-GN-A266-06 11 34165011 34165011 G A NAT10 Missense_Mutation p.D969N 0.23 tolerated(0.09) benign(0.133) TCGA-GN-A266-06 11 35287113 35287113 G A SLC1A2 Silent p.V538V 0.30 TCGA-GN-A266-06 11 36248875 36248875 C T LDLRAD3 Missense_Mutation p.T232I 0.23 deleterious_low_confidence(0) benign(0.203) TCGA-GN-A266-06 11 3661515 3661515 C T ART5 Silent p.E48E 0.25 TCGA-GN-A266-06 11 3681445 3681445 C T ART1 Silent p.Y232Y 0.17 TCGA-GN-A266-06 11 40136321 40136321 G A LRRC4C Missense_Mutation p.P508S 0.23 tolerated(0.14) benign(0.408) TCGA-GN-A266-06 11 40136382 40136382 G A LRRC4C Silent p.T487T 0.27 TCGA-GN-A266-06 11 4410916 4410916 C T TRIM21 Missense_Mutation p.V158M 0.20 tolerated(0.11) benign(0.011) TCGA-GN-A266-06 11 4410968 4410968 C T TRIM21 Silent p.Q140Q 0.19 TCGA-GN-A266-06 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.13 tolerated(0.12) probably_damaging(0.988) TCGA-GN-A266-06 11 45868990 45868990 C T CRY2 Silent p.V4V 0.30 TCGA-GN-A266-06 11 4608102 4608102 G A OR52I2 Silent p.R20R 0.23 TCGA-GN-A266-06 11 4608104 4608104 A T OR52I2 Missense_Mutation p.K21I 0.25 deleterious(0) benign(0.088) TCGA-GN-A266-06 11 4608395 4608395 G A OR52I2 Missense_Mutation p.G118E 0.17 tolerated(0.11) possibly_damaging(0.904) TCGA-GN-A266-06 11 4624525 4624525 C T TRIM68 Missense_Mutation p.E158K 0.15 tolerated(0.08) benign(0.021) TCGA-GN-A266-06 11 46637537 46637537 G A HARBI1 Missense_Mutation p.S84F 0.40 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 11 46747500 46747500 G A F2 Silent p.R217R 0.22 TCGA-GN-A266-06 11 46897410 46897410 C T LRP4 Missense_Mutation p.G1215E 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 11 46921504 46921504 C T LRP4 Missense_Mutation p.E114K 0.19 tolerated(0.24) benign(0.123) TCGA-GN-A266-06 11 47330565 47330565 G A MADD Silent p.E1301E 0.27 TCGA-GN-A266-06 11 47435027 47435027 C T SLC39A13 Missense_Mutation p.P205L 0.21 tolerated(0.13) benign(0.026) TCGA-GN-A266-06 11 4790428 4790428 G A OR51F1 Silent p.F240F 0.36 TCGA-GN-A266-06 11 4790871 4790871 C T OR51F1 Missense_Mutation p.E93K 0.35 tolerated(0.09) benign(0.018) TCGA-GN-A266-06 11 4790995 4790995 G A OR51F1 Silent p.I51I 0.23 TCGA-GN-A266-06 11 48158626 48158626 G A PTPRJ Missense_Mutation p.D649N 0.14 deleterious(0.03) probably_damaging(1) TCGA-GN-A266-06 11 48239224 48239224 G A OR4B1 Missense_Mutation p.R288K 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A266-06 11 48267329 48267329 G A OR4X2 Nonsense_Mutation p.W225* 0.28 TCGA-GN-A266-06 11 48267363 48267363 C T OR4X2 Silent p.F236F 0.37 TCGA-GN-A266-06 11 48267543 48267543 G A OR4X2 Silent p.R296R 0.24 TCGA-GN-A266-06 11 48328680 48328680 C T OR4S1 Silent p.V302V 0.45 TCGA-GN-A266-06 11 48346780 48346780 C T OR4C3 Silent p.T96T 0.08 TCGA-GN-A266-06 11 4843255 4843255 C T OR51F2 Silent p.L214L 0.31 TCGA-GN-A266-06 11 4869580 4869580 G A OR51S1 Missense_Mutation p.H287Y 0.21 tolerated(1) probably_damaging(0.998) TCGA-GN-A266-06 11 4903267 4903267 G A OR51T1 Missense_Mutation p.M73I 0.20 tolerated(0.28) benign(0.004) TCGA-GN-A266-06 11 4903640 4903640 C T OR51T1 Missense_Mutation p.H198Y 0.18 deleterious(0.04) benign(0.013) TCGA-GN-A266-06 11 49204776 49204776 C T FOLH1 Missense_Mutation p.G282E 0.10 tolerated(0.56) benign(0) TCGA-GN-A266-06 11 49204777 49204777 C T FOLH1 Missense_Mutation p.G282R 0.10 tolerated(0.22) benign(0) TCGA-GN-A266-06 11 49227707 49227707 A T FOLH1 Missense_Mutation p.S46T 0.24 tolerated(0.71) benign(0.002) TCGA-GN-A266-06 11 49597803 49597803 C T RP11-707M1.1 RNA 0.38 TCGA-GN-A266-06 11 49598031 49598031 G A RP11-707M1.1 RNA 0.29 TCGA-GN-A266-06 11 49805603 49805603 G A RP11-707M1.1 RNA 0.31 TCGA-GN-A266-06 11 5010967 5010967 G A MMP26 Silent p.R63R 0.16 TCGA-GN-A266-06 11 5011075 5011075 G A MMP26 Nonsense_Mutation p.W99* 0.29 TCGA-GN-A266-06 11 5020604 5020604 C T OR51L1 Missense_Mutation p.P131L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 11 5021147 5021147 G A OR51L1 Missense_Mutation p.R312K 0.38 tolerated(1) benign(0) TCGA-GN-A266-06 11 5068044 5068044 G A OR52J3 Missense_Mutation p.G97R 0.26 deleterious(0.05) probably_damaging(0.937) TCGA-GN-A266-06 11 5068330 5068330 G A OR52J3 Missense_Mutation p.G192E 0.27 deleterious(0.01) benign(0.038) TCGA-GN-A266-06 11 51515947 51515947 C T OR4C46 Silent p.S222S 0.39 TCGA-GN-A266-06 11 5153873 5153873 G A OR52A5 5'Flank 0.42 TCGA-GN-A266-06 11 5172912 5172912 G A OR52A1 Missense_Mutation p.R230C 0.16 deleterious(0.03) benign(0.052) TCGA-GN-A266-06 11 5173281 5173281 G A OR52A1 Missense_Mutation p.H107Y 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 5173510 5173510 C T OR52A1 Silent p.G30G 0.30 TCGA-GN-A266-06 11 5221098 5221098 G A OR51V1 Missense_Mutation p.S278F 0.24 deleterious(0.02) probably_damaging(0.968) TCGA-GN-A266-06 11 5322889 5322889 G A OR51B4 Silent p.F96F 0.22 TCGA-GN-A266-06 11 5345396 5345396 G A OR51B2 Silent p.L44L 0.25 TCGA-GN-A266-06 11 5364400 5364400 C T OR51B5 Missense_Mutation p.D119N 0.27 deleterious(0) possibly_damaging(0.634) TCGA-GN-A266-06 11 5372791 5372791 G A OR51B6 Missense_Mutation p.M18I 0.30 deleterious(0.01) benign(0.017) TCGA-GN-A266-06 11 5373574 5373574 C T OR51B6 Silent p.F279F 0.25 TCGA-GN-A266-06 11 552096 552096 G A LRRC56 Missense_Mutation p.E349K 0.13 tolerated(0.83) benign(0.07) TCGA-GN-A266-06 11 5528669 5528669 C T UBQLN3 3'UTR 0.38 TCGA-GN-A266-06 11 5528791 5528791 G A UBQLN3 3'UTR 0.31 TCGA-GN-A266-06 11 5529180 5529180 C T UBQLN3 Missense_Mutation p.E537K 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 11 55321940 55321940 G A OR4C15 Missense_Mutation p.G53E 0.25 tolerated_low_confidence(1) benign(0) TCGA-GN-A266-06 11 55322605 55322605 T C OR4C15 Silent p.L275L 0.24 TCGA-GN-A266-06 11 55322720 55322720 G A OR4C15 Missense_Mutation p.R313Q 0.39 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-GN-A266-06 11 55405880 55405880 C T OR4P4 Missense_Mutation p.S16F 0.08 tolerated(0.12) benign(0.027) TCGA-GN-A266-06 11 55433219 55433219 C T OR4C6 Silent p.L193L 0.28 TCGA-GN-A266-06 11 55606305 55606305 A C OR5D16 Missense_Mutation p.Q26H 0.45 deleterious(0.01) benign(0.036) TCGA-GN-A266-06 11 55653172 55653172 G A TRIM51 Missense_Mutation p.E90K 0.45 tolerated(0.12) probably_damaging(0.996) TCGA-GN-A266-06 11 5566366 5566366 G A OR52H1 Missense_Mutation p.H130Y 0.30 deleterious(0) benign(0.001) TCGA-GN-A266-06 11 5566574 5566574 C A OR52H1 Missense_Mutation p.E60D 0.16 tolerated(0.13) benign(0.007) TCGA-GN-A266-06 11 55703403 55703403 G A OR5I1 Silent p.S158S 0.12 TCGA-GN-A266-06 11 55735094 55735094 G A OR10AG1 Silent p.T282T 0.45 TCGA-GN-A266-06 11 55735475 55735475 G A OR10AG1 Silent p.F155F 0.19 TCGA-GN-A266-06 11 55735698 55735698 C T OR10AG1 Missense_Mutation p.G81E 0.29 deleterious(0.04) benign(0.167) TCGA-GN-A266-06 11 55761292 55761292 C T OR5F1 Silent p.Q270Q 0.30 TCGA-GN-A266-06 11 55798094 55798094 C T OR5AS1 Missense_Mutation p.S67F 0.24 deleterious(0) possibly_damaging(0.907) TCGA-GN-A266-06 11 55860916 55860916 C T OR8I2 Silent p.L45L 0.32 TCGA-GN-A266-06 11 55861551 55861551 C T OR8I2 Silent p.F256F 0.22 TCGA-GN-A266-06 11 55927621 55927621 G A OR8K5 Missense_Mutation p.P58L 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.27 deleterious(0.02) benign(0.181) TCGA-GN-A266-06 11 56043562 56043562 C T OR5T1 Missense_Mutation p.P150S 0.30 tolerated(0.23) benign(0.012) TCGA-GN-A266-06 11 56043563 56043563 C T OR5T1 Missense_Mutation p.P150L 0.30 deleterious(0.01) benign(0.019) TCGA-GN-A266-06 11 56058264 56058264 G A OR8H1 Missense_Mutation p.S92F 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 11 56058404 56058404 C T OR8H1 Missense_Mutation p.M45I 0.34 tolerated(0.08) possibly_damaging(0.874) TCGA-GN-A266-06 11 56085818 56085818 C T OR8K3 Silent p.F12F 0.26 TCGA-GN-A266-06 11 56086445 56086445 C T OR8K3 Silent p.I221I 0.31 TCGA-GN-A266-06 11 56128269 56128269 C T OR8J1 Missense_Mutation p.P183S 0.24 deleterious(0.02) possibly_damaging(0.483) TCGA-GN-A266-06 11 56143728 56143728 C T OR8U1 Missense_Mutation p.S210F 0.07 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 56143975 56143975 C G OR8U1 Silent p.L292L 0.27 TCGA-GN-A266-06 11 56230593 56230593 G A OR5M9 Silent p.C95C 0.42 TCGA-GN-A266-06 11 56258736 56258736 C T OR5M8 Silent p.T37T 0.27 TCGA-GN-A266-06 11 56310459 56310459 G A OR5M11 Missense_Mutation p.S92F 0.39 deleterious(0.01) possibly_damaging(0.895) TCGA-GN-A266-06 11 56344834 56344834 G A OR5M10 Missense_Mutation p.R122C 0.18 deleterious(0.03) possibly_damaging(0.88) TCGA-GN-A266-06 11 56756661 56756661 G A OR5AK2 Silent p.L91L 0.20 TCGA-GN-A266-06 11 5686228 5686228 C T TRIM5 Silent p.V431V 0.24 TCGA-GN-A266-06 11 56949566 56949566 C T LRRC55 Missense_Mutation p.L67F 0.33 tolerated(0.08) benign(0.002) TCGA-GN-A266-06 11 57003729 57003729 G A APLNR Silent p.I250I 0.25 TCGA-GN-A266-06 11 5729804 5729804 C T TRIM22 Intron 0.26 TCGA-GN-A266-06 11 5758155 5758155 C T OR56B1 Missense_Mutation p.H137Y 0.24 tolerated(0.2) benign(0.003) TCGA-GN-A266-06 11 5758396 5758396 G A OR56B1 Missense_Mutation p.G217E 0.16 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 11 5776644 5776644 G A OR52N4 Missense_Mutation p.R225Q 0.26 tolerated(0.15) benign(0.037) TCGA-GN-A266-06 11 5776645 5776645 G T OR52N4 Silent p.R225R 0.29 TCGA-GN-A266-06 11 57886005 57886005 G A OR9I1 Silent p.V304V 0.36 TCGA-GN-A266-06 11 57971493 57971493 C T OR1S2 Missense_Mutation p.G54E 0.32 deleterious(0.01) benign(0.263) TCGA-GN-A266-06 11 57982705 57982705 C T OR1S1 Silent p.F163F 0.11 TCGA-GN-A266-06 11 58190485 58190485 G A OR5B2 Missense_Mutation p.L84F 0.34 deleterious_low_confidence(0.02) benign(0.078) TCGA-GN-A266-06 11 58190555 58190555 G A OR5B2 Silent p.F60F 0.37 TCGA-GN-A266-06 11 58207496 58207496 C T OR5B12 Missense_Mutation p.M43I 0.26 tolerated_low_confidence(0.19) benign(0.044) TCGA-GN-A266-06 11 58477456 58477456 G A GLYAT Missense_Mutation p.T225I 0.20 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 11 58723398 58723398 A T GLYATL1 Missense_Mutation p.E300D 0.28 tolerated(0.63) benign(0.01) TCGA-GN-A266-06 11 5878069 5878069 G A OR52E8 Silent p.V288V 0.33 TCGA-GN-A266-06 11 5905919 5905919 C T OR52E4 Nonsense_Mutation p.Q133* 0.29 TCGA-GN-A266-06 11 59211293 59211293 C A OR5A1 Missense_Mutation p.L218I 0.30 tolerated(0.09) benign(0.309) TCGA-GN-A266-06 11 59224646 59224646 C T OR4D6 Silent p.I71I 0.41 TCGA-GN-A266-06 11 59244992 59244992 C T OR4D10 Silent p.F30F 0.19 TCGA-GN-A266-06 11 59271645 59271645 G A OR4D11 Missense_Mutation p.M199I 0.11 tolerated(0.16) benign(0.068) TCGA-GN-A266-06 11 59271963 59271963 C T OR4D11 Silent p.L305L 0.38 TCGA-GN-A266-06 11 59481007 59481007 G A OR10V1 Silent p.F104F 0.29 TCGA-GN-A266-06 11 5969065 5969065 C T OR56A3 Silent p.I163I 0.31 TCGA-GN-A266-06 11 6007653 6007653 C T OR52L1 Missense_Mutation p.G170R 0.10 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 6007702 6007702 G A OR52L1 Silent p.I153I 0.35 TCGA-GN-A266-06 11 6008110 6008110 G A OR52L1 Silent p.L17L 0.10 TCGA-GN-A266-06 11 6008194 6008194 C T OR52L1 5'UTR 0.23 TCGA-GN-A266-06 11 60559775 60559775 C T MS4A10 Missense_Mutation p.T114I 0.26 tolerated(0.48) benign(0.003) TCGA-GN-A266-06 11 60694698 60694698 G A TMEM132A Silent p.L41L 0.42 TCGA-GN-A266-06 11 60699489 60699489 G A TMEM132A Missense_Mutation p.G417R 0.41 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 11 60777153 60777153 G A CD6 Silent p.S297S 0.27 TCGA-GN-A266-06 11 61048587 61048587 G A VWCE Missense_Mutation p.P303L 0.41 deleterious(0.05) benign(0.282) TCGA-GN-A266-06 11 61560067 61560067 G A TMEM258 5'UTR 0.25 TCGA-GN-A266-06 11 61631319 61631319 C T FADS2 Intron 0.25 TCGA-GN-A266-06 11 6190735 6190735 G A OR52B2 Silent p.V274V 0.33 TCGA-GN-A266-06 11 61957719 61957719 C T SCGB1D1 5'UTR 0.24 TCGA-GN-A266-06 11 61960872 61960872 G A SCGB1D1 Missense_Mutation p.G82E 0.36 tolerated(0.92) benign(0.048) TCGA-GN-A266-06 11 62010826 62010826 C T SCGB1D2 Silent p.L41L 0.35 TCGA-GN-A266-06 11 6232201 6232201 G A C11orf42 Missense_Mutation p.D311N 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 11 62458112 62458112 T C BSCL2 Silent p.E402E 0.15 TCGA-GN-A266-06 11 62476263 62476263 C T GNG3 Silent p.F71F 0.33 TCGA-GN-A266-06 11 62520741 62520741 C T ZBTB3 Silent p.K182K 0.31 TCGA-GN-A266-06 11 62744254 62744254 C T SLC22A6 3'UTR 0.23 TCGA-GN-A266-06 11 62752125 62752125 A C SLC22A6 Missense_Mutation p.V13G 0.30 deleterious(0) benign(0.342) TCGA-GN-A266-06 11 62766395 62766395 G A SLC22A8 Silent p.S253S 0.20 TCGA-GN-A266-06 11 62766457 62766457 G A SLC22A8 Missense_Mutation p.P233S 0.16 tolerated(0.11) possibly_damaging(0.742) TCGA-GN-A266-06 11 62782234 62782234 G A SLC22A8 Missense_Mutation p.P66L 0.41 tolerated(0.4) benign(0.004) TCGA-GN-A266-06 11 63067087 63067087 C T SLC22A10 Silent p.I352I 0.41 TCGA-GN-A266-06 11 63072291 63072291 C T SLC22A10 Missense_Mutation p.L510F 0.32 tolerated(0.25) benign(0.03) TCGA-GN-A266-06 11 63078499 63078499 A T SLC22A10 Missense_Mutation p.K540M 0.18 deleterious(0.03) possibly_damaging(0.458) TCGA-GN-A266-06 11 63137682 63137682 C T SLC22A9 Missense_Mutation p.H52Y 0.28 tolerated(0.12) possibly_damaging(0.61) TCGA-GN-A266-06 11 63230976 63230976 C T HRASLS5 Silent p.%3D 0.20 TCGA-GN-A266-06 11 63326003 63326003 C T HRASLS2 Missense_Mutation p.R83K 0.22 tolerated(1) benign(0.002) TCGA-GN-A266-06 11 63342329 63342329 G A PLA2G16 3'UTR 0.31 TCGA-GN-A266-06 11 63676485 63676485 C T MARK2 Missense_Mutation p.R715C 0.40 deleterious(0.05) benign(0.021) TCGA-GN-A266-06 11 64037647 64037647 G A BAD 3'UTR 0.21 TCGA-GN-A266-06 11 64137230 64137230 C T RPS6KA4 Silent p.F554F 0.40 TCGA-GN-A266-06 11 64326681 64326681 C T SLC22A11 Silent p.G156G 0.37 TCGA-GN-A266-06 11 64359241 64359241 C T SLC22A12 Silent p.A71A 0.24 TCGA-GN-A266-06 11 64374929 64374929 C T NRXN2 Silent p.V1626V 0.22 TCGA-GN-A266-06 11 64507261 64507261 G A RASGRP2 Silent p.F181F 0.33 TCGA-GN-A266-06 11 64525948 64525948 C T PYGM Missense_Mutation p.D129N 0.24 deleterious(0.03) benign(0.048) TCGA-GN-A266-06 11 64602854 64602854 C T CDC42BPG Missense_Mutation p.E640K 0.25 tolerated(0.05) probably_damaging(0.993) TCGA-GN-A266-06 11 64627465 64627465 G A EHD1 Silent p.I282I 0.17 TCGA-GN-A266-06 11 64717230 64717230 C T C11orf85 Missense_Mutation p.E112K 0.33 tolerated(0.08) possibly_damaging(0.486) TCGA-GN-A266-06 11 64813270 64813270 C T NAALADL1 Intron 0.41 TCGA-GN-A266-06 11 64939997 64939997 G A SPDYC Missense_Mutation p.G146E 0.22 tolerated(0.08) possibly_damaging(0.524) TCGA-GN-A266-06 11 6502566 6502566 G A ARFIP2 5'Flank 0.47 TCGA-GN-A266-06 11 65108524 65108524 C T DPF2 Missense_Mutation p.S94F 0.48 tolerated(0.1) benign(0.006) TCGA-GN-A266-06 11 65123368 65123368 C T TIGD3 Missense_Mutation p.S30F 0.36 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 11 65266490 65266490 A G MALAT1 RNA 0.28 TCGA-GN-A266-06 11 65715223 65715223 G A TSGA10IP RNA 0.38 TCGA-GN-A266-06 11 65788969 65788969 G A CATSPER1 Silent p.L563L 0.28 TCGA-GN-A266-06 11 65810436 65810436 G A GAL3ST3 Missense_Mutation p.P280S 0.33 tolerated(0.21) benign(0.012) TCGA-GN-A266-06 11 65988658 65988658 C T PACS1 Silent p.S411S 0.29 TCGA-GN-A266-06 11 66191885 66191885 C T NPAS4 Silent p.F508F 0.34 TCGA-GN-A266-06 11 66254077 66254077 C T DPP3 Missense_Mutation p.L143F 0.31 deleterious(0.05) benign(0.435) TCGA-GN-A266-06 11 66358663 66358663 G A CCDC87 Silent p.F608F 0.27 TCGA-GN-A266-06 11 6636428 6636428 G A TPP1 Missense_Mutation p.P467S 0.23 deleterious(0.03) benign(0.438) TCGA-GN-A266-06 11 66475083 66475083 C T SPTBN2 Missense_Mutation p.M519I 0.27 deleterious(0.02) benign(0.023) TCGA-GN-A266-06 11 66571633 66571633 A G C11orf80 Missense_Mutation p.N337S 0.32 tolerated(0.28) benign(0.004) TCGA-GN-A266-06 11 66948824 66948824 T A KDM2A Nonsense_Mutation p.L72* 0.16 TCGA-GN-A266-06 11 67379641 67379641 C A NDUFV1 Silent p.R405R 0.10 TCGA-GN-A266-06 11 67765196 67765196 G A UNC93B1 Silent p.L285L 0.21 TCGA-GN-A266-06 11 68125224 68125224 G A LRP5 Missense_Mutation p.G199R 0.45 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 68207320 68207320 G A LRP5 Missense_Mutation p.R1475Q 0.26 deleterious(0) possibly_damaging(0.855) TCGA-GN-A266-06 11 6866952 6866952 C T OR10A5 Silent p.I13I 0.27 TCGA-GN-A266-06 11 68747504 68747504 C T MRGPRD Missense_Mutation p.E318K 0.37 tolerated(0.05) benign(0.005) TCGA-GN-A266-06 11 68747545 68747545 G A MRGPRD Missense_Mutation p.P304L 0.34 deleterious(0) probably_damaging(0.937) TCGA-GN-A266-06 11 6897966 6897966 C T OR10A4 Missense_Mutation p.L30F 0.36 tolerated(0.7) benign(0.049) TCGA-GN-A266-06 11 6912927 6912927 C T OR2D2 Missense_Mutation p.E269K 0.28 tolerated(0.13) benign(0.005) TCGA-GN-A266-06 11 6913584 6913584 G A OR2D2 Missense_Mutation p.H50Y 0.26 tolerated(1) benign(0.001) TCGA-GN-A266-06 11 6977606 6977606 C T ZNF215 Silent p.N466N 0.42 TCGA-GN-A266-06 11 70183477 70183477 C T PPFIA1 Missense_Mutation p.L479F 0.30 deleterious(0.01) benign(0.033) TCGA-GN-A266-06 11 7022082 7022082 C T ZNF214 Missense_Mutation p.D278N 0.17 tolerated(0.22) benign(0.001) TCGA-GN-A266-06 11 7022616 7022616 G A ZNF214 Missense_Mutation p.R100C 0.36 tolerated(0.06) benign(0.001) TCGA-GN-A266-06 11 70336376 70336376 C T SHANK2 Intron 0.40 TCGA-GN-A266-06 11 7063913 7063913 G A NLRP14 Missense_Mutation p.R219K 0.34 tolerated(0.25) benign(0.203) TCGA-GN-A266-06 11 7070921 7070921 C T NLRP14 Missense_Mutation p.P715S 0.20 tolerated(0.57) benign(0.013) TCGA-GN-A266-06 11 7092536 7092536 C T NLRP14 Silent p.F1093F 0.31 TCGA-GN-A266-06 11 7110574 7110574 G A RBMXL2 Missense_Mutation p.D75N 0.42 tolerated(0.07) benign(0.171) TCGA-GN-A266-06 11 71276849 71276849 G A KRTAP5-10 Silent p.G72G 0.40 TCGA-GN-A266-06 11 71907035 71907035 C T FOLR1 Silent p.S196S 0.29 TCGA-GN-A266-06 11 72423317 72423317 C T ARAP1 Missense_Mutation p.D316N 0.31 tolerated(0.07) benign(0.379) TCGA-GN-A266-06 11 72423318 72423318 C T ARAP1 Missense_Mutation p.M315I 0.31 deleterious(0.05) probably_damaging(0.943) TCGA-GN-A266-06 11 72437979 72437979 G A ARAP1 Silent p.L65L 0.35 TCGA-GN-A266-06 11 72945458 72945458 C T P2RY2 Missense_Mutation p.S85F 0.10 deleterious(0) probably_damaging(0.979) TCGA-GN-A266-06 11 73021882 73021882 C T ARHGEF17 Silent p.S733S 0.12 TCGA-GN-A266-06 11 73022164 73022164 C T ARHGEF17 Silent p.S827S 0.39 TCGA-GN-A266-06 11 73748573 73748573 A C C2CD3 Missense_Mutation p.I1944S 0.36 deleterious(0) possibly_damaging(0.868) TCGA-GN-A266-06 11 74013577 74013577 C T P4HA3 Missense_Mutation p.G135E 0.25 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 11 74324008 74324008 C T POLD3 Silent p.F115F 0.31 TCGA-GN-A266-06 11 74563124 74563124 C T XRRA1 Missense_Mutation p.A384T 0.13 tolerated(0.12) benign(0.07) TCGA-GN-A266-06 11 74904306 74904306 C T SLCO2B1 Silent p.F373F 0.41 TCGA-GN-A266-06 11 74911432 74911432 G A SLCO2B1 Missense_Mutation p.R588K 0.33 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 11 76370954 76370954 G A LRRC32 Silent p.T561T 0.45 TCGA-GN-A266-06 11 76370955 76370955 G A LRRC32 Missense_Mutation p.T561I 0.44 tolerated(0.16) benign(0.195) TCGA-GN-A266-06 11 76371827 76371827 C T LRRC32 Silent p.L270L 0.12 TCGA-GN-A266-06 11 76813933 76813933 C T OMP Silent p.V16V 0.55 TCGA-GN-A266-06 11 7686720 7686720 G A CYB5R2 Missense_Mutation p.P239L 0.21 deleterious(0.05) benign(0.168) TCGA-GN-A266-06 11 76905399 76905399 G A MYO7A Missense_Mutation p.E1385K 0.36 deleterious(0.02) benign(0.019) TCGA-GN-A266-06 11 76909548 76909548 C T MYO7A Missense_Mutation p.L1484F 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-GN-A266-06 11 7721909 7721909 C T OVCH2 Missense_Mutation p.G279R 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 11 77594888 77594888 G A INTS4 Silent p.T901T 0.47 TCGA-GN-A266-06 11 77594889 77594889 G A INTS4 Missense_Mutation p.T901I 0.47 deleterious(0.03) benign(0.079) TCGA-GN-A266-06 11 78380273 78380273 T A TENM4 Missense_Mutation p.T2373S 0.33 tolerated(0.34) benign(0.002) TCGA-GN-A266-06 11 78467953 78467953 G A TENM4 Missense_Mutation p.P885S 0.34 tolerated(0.52) benign(0.001) TCGA-GN-A266-06 11 7950088 7950088 C T OR10A6 Missense_Mutation p.G41E 0.19 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 11 7981506 7981506 C T NLRP10 Silent p.Q551Q 0.23 TCGA-GN-A266-06 11 7981881 7981881 G A NLRP10 Silent p.F426F 0.18 TCGA-GN-A266-06 11 8016539 8016539 C T EIF3F Silent p.I252I 0.35 TCGA-GN-A266-06 11 8060477 8060477 G A TUB Silent p.G19G 0.35 TCGA-GN-A266-06 11 8132349 8132349 C T RIC3 Missense_Mutation p.E336K 0.17 deleterious_low_confidence(0.02) benign(0.03) TCGA-GN-A266-06 11 83170872 83170872 C T DLG2 Missense_Mutation p.E973K 0.33 deleterious(0) probably_damaging(0.956) TCGA-GN-A266-06 11 83673961 83673961 G A DLG2 Missense_Mutation p.P436L 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 11 85963196 85963196 C T EED Missense_Mutation p.H92Y 0.19 deleterious(0) probably_damaging(0.982) TCGA-GN-A266-06 11 88780397 88780397 G A GRM5 Missense_Mutation p.S215L 0.38 deleterious(0.01) benign(0.059) TCGA-GN-A266-06 11 88961003 88961003 C T TYR Missense_Mutation p.P350L 0.31 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 11 89774566 89774566 C T TRIM49C Missense_Mutation p.P403S 0.24 deleterious(0.03) benign(0.035) TCGA-GN-A266-06 11 89903266 89903266 C T NAALAD2 Missense_Mutation p.P458S 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 92085960 92085960 G A FAT3 Missense_Mutation p.D228N 0.24 benign(0.381) TCGA-GN-A266-06 11 92534656 92534656 G A FAT3 Missense_Mutation p.G2826E 0.22 probably_damaging(1) TCGA-GN-A266-06 11 92616291 92616291 G A FAT3 Silent p.Q4223Q 0.26 TCGA-GN-A266-06 11 93127763 93127763 C T CCDC67 Silent p.L394L 0.10 TCGA-GN-A266-06 11 93523911 93523911 C T MED17 Nonsense_Mutation p.R197* 0.20 TCGA-GN-A266-06 11 93800693 93800693 G A HEPHL1 Silent p.P280P 0.14 TCGA-GN-A266-06 11 93800694 93800694 G A HEPHL1 Missense_Mutation p.E281K 0.15 tolerated(0.14) benign(0.439) TCGA-GN-A266-06 11 93911600 93911600 C T PANX1 Silent p.F129F 0.50 TCGA-GN-A266-06 11 94340698 94340698 C T PIWIL4 Missense_Mutation p.L578F 0.35 deleterious(0) benign(0.292) TCGA-GN-A266-06 11 94731240 94731240 C T KDM4D Missense_Mutation p.S235F 0.21 tolerated(0.07) benign(0.271) TCGA-GN-A266-06 11 9606822 9606822 C T WEE1 Nonsense_Mutation p.R436* 0.18 TCGA-GN-A266-06 11 9608075 9608075 C T WEE1 Missense_Mutation p.P517L 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 11 99690398 99690398 G A CNTN5 Missense_Mutation p.G60E 0.36 tolerated_low_confidence(0.12) benign(0.016) TCGA-GN-A266-06 12 100496634 100496634 G A UHRF1BP1L Missense_Mutation p.S83F 0.72 tolerated(0.64) benign(0.141) TCGA-GN-A266-06 12 10251418 10251418 G A CLEC1A Missense_Mutation p.P35L 0.44 tolerated(0.08) benign(0.006) TCGA-GN-A266-06 12 103795408 103795408 C T C12orf42 Missense_Mutation p.D42N 0.56 deleterious(0.01) benign(0.389) TCGA-GN-A266-06 12 104031985 104031985 G A STAB2 Missense_Mutation p.G301R 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 12 104063338 104063338 G A STAB2 Missense_Mutation p.G731D 0.60 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 12 10783853 10783853 C T STYK1 Missense_Mutation p.G81E 0.55 tolerated(1) benign(0.025) TCGA-GN-A266-06 12 109631465 109631465 C T ACACB Silent p.L804L 0.69 TCGA-GN-A266-06 12 110782763 110782763 C T ATP2A2 Missense_Mutation p.S865F 0.67 deleterious(0) possibly_damaging(0.775) TCGA-GN-A266-06 12 110782764 110782764 C T ATP2A2 Silent p.S865S 0.67 TCGA-GN-A266-06 12 112645736 112645736 G A HECTD4 Silent p.F2545F 0.58 TCGA-GN-A266-06 12 113306318 113306318 G A RPH3A Silent p.K176K 0.59 TCGA-GN-A266-06 12 113388611 113388611 C T OAS3 Silent p.I496I 0.54 TCGA-GN-A266-06 12 113407527 113407527 G A OAS3 Silent p.R1073R 0.71 TCGA-GN-A266-06 12 113865868 113865868 C T SDSL Silent p.S27S 0.37 TCGA-GN-A266-06 12 11506862 11506862 C T PRB1 Missense_Mutation p.G59R 0.47 tolerated_low_confidence(0.1) unknown(0) TCGA-GN-A266-06 12 115121030 115121030 C T TBX3 5'UTR 0.31 TCGA-GN-A266-06 12 117665424 117665424 C T NOS1 Nonsense_Mutation p.W1177* 0.53 TCGA-GN-A266-06 12 117703244 117703244 G A NOS1 Silent p.Y671Y 0.47 TCGA-GN-A266-06 12 117710301 117710301 G A NOS1 Silent p.L576L 0.58 TCGA-GN-A266-06 12 117768619 117768619 C T NOS1 Missense_Mutation p.G86S 0.64 tolerated_low_confidence(0.86) benign(0.032) TCGA-GN-A266-06 12 117905003 117905003 G A KSR2 3'UTR 0.57 TCGA-GN-A266-06 12 117914306 117914306 G A KSR2 Missense_Mutation p.L849F 0.67 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 117962898 117962898 C T KSR2 Missense_Mutation p.D660N 0.51 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 12 117992998 117992998 G A KSR2 Silent p.L498L 0.52 TCGA-GN-A266-06 12 118105313 118105313 G A KSR2 Silent p.T379T 0.57 TCGA-GN-A266-06 12 119583234 119583234 C T SRRM4 Missense_Mutation p.P274S 0.30 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-GN-A266-06 12 119631570 119631570 C T HSPB8 Silent p.I166I 0.43 TCGA-GN-A266-06 12 119942892 119942892 C T CCDC60 Missense_Mutation p.P223S 0.60 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 12 119943007 119943007 C T CCDC60 Missense_Mutation p.S261L 0.32 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 12 121174915 121174915 G A ACADS Missense_Mutation p.G113R 0.58 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 121682391 121682391 G A CAMKK2 Silent p.S527S 0.20 TCGA-GN-A266-06 12 123419895 123419895 G A ABCB9 Silent p.F609F 0.44 TCGA-GN-A266-06 12 123433332 123433332 C T ABCB9 Missense_Mutation p.D298N 0.59 tolerated(0.1) probably_damaging(0.918) TCGA-GN-A266-06 12 124319972 124319972 G A DNAH10 Missense_Mutation p.R1482K 0.80 possibly_damaging(0.491) TCGA-GN-A266-06 12 124364269 124364269 T G DNAH10 Missense_Mutation p.F2734C 0.58 probably_damaging(0.95) TCGA-GN-A266-06 12 124364270 124364270 C T DNAH10 Silent p.F2734F 0.59 TCGA-GN-A266-06 12 124387580 124387580 C T DNAH10 Silent p.T3127T 0.60 TCGA-GN-A266-06 12 124387620 124387620 G A DNAH10 Missense_Mutation p.E3141K 0.65 benign(0.388) TCGA-GN-A266-06 12 125397978 125397978 G A UBC Missense_Mutation p.P114S 0.57 deleterious(0.01) probably_damaging(0.917) TCGA-GN-A266-06 12 129559395 129559397 TTC ATTT TMEM132D Frame_Shift_Ins p.E775Kfs*22 0.38 TCGA-GN-A266-06 12 130833935 130833935 C T PIWIL1 Nonsense_Mutation p.Q296* 0.35 TCGA-GN-A266-06 12 132562175 132562175 C T EP400 Missense_Mutation p.P3110L 0.50 probably_damaging(0.974) TCGA-GN-A266-06 12 13529258 13529258 C T C12orf36 Missense_Mutation p.E28K 0.39 possibly_damaging(0.486) TCGA-GN-A266-06 12 13715851 13715851 G A GRIN2B Missense_Mutation p.R1441C 0.65 deleterious(0) probably_damaging(0.91) TCGA-GN-A266-06 12 14693812 14693812 T C PLBD1 Silent p.K148K 0.65 TCGA-GN-A266-06 12 14781642 14781642 C T GUCY2C Silent p.E729E 0.56 TCGA-GN-A266-06 12 15262321 15262321 G A RERG Missense_Mutation p.P108L 0.13 deleterious(0.01) possibly_damaging(0.869) TCGA-GN-A266-06 12 18691095 18691095 G A PIK3C2G Missense_Mutation p.R1069Q 0.66 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 12 18836234 18836234 G A PLCZ1 Missense_Mutation p.S589F 0.69 deleterious(0) probably_damaging(0.977) TCGA-GN-A266-06 12 18854641 18854641 C T PLCZ1 Missense_Mutation p.G312S 0.50 tolerated(0.21) benign(0.346) TCGA-GN-A266-06 12 1893198 1893198 C T ADIPOR2 Missense_Mutation p.R331W 0.62 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 21242995 21242995 C T SLCO1B7 Silent p.F626F 0.52 TCGA-GN-A266-06 12 21331569 21331569 C T SLCO1B1 Missense_Mutation p.R181C 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 21422553 21422553 C T SLCO1A2 Missense_Mutation p.E648K 0.39 tolerated(0.14) benign(0.009) TCGA-GN-A266-06 12 21457408 21457408 G A SLCO1A2 Missense_Mutation p.S181F 0.67 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 12 21970222 21970222 C T ABCC9 Nonsense_Mutation p.W1264* 0.63 TCGA-GN-A266-06 12 22005137 22005137 C T ABCC9 Missense_Mutation p.G888E 0.83 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 12 25002804 25002804 C T BCAT1 Missense_Mutation p.G209E 0.58 deleterious(0.04) benign(0.109) TCGA-GN-A266-06 12 25297531 25297531 C T CASC1 Missense_Mutation p.R257Q 0.96 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 25314098 25314098 C T CASC1 Missense_Mutation p.E19K 0.88 deleterious(0) unknown(0) TCGA-GN-A266-06 12 32993999 32993999 C T PKP2 Missense_Mutation p.D551N 0.56 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 33529798 33529798 G A SYT10 Silent p.S513S 0.60 TCGA-GN-A266-06 12 33535419 33535419 C T SYT10 Missense_Mutation p.R412Q 0.55 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 12 33535420 33535420 G A SYT10 Nonsense_Mutation p.R412* 0.55 TCGA-GN-A266-06 12 352957 352957 G A SLC6A13 Silent p.L75L 0.46 TCGA-GN-A266-06 12 38710566 38710566 C T ALG10B 5'UTR 0.50 TCGA-GN-A266-06 12 39161474 39161474 G A CPNE8 Missense_Mutation p.P180S 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 39994425 39994425 C T ABCD2 Missense_Mutation p.E532K 0.36 tolerated(0.2) benign(0.003) TCGA-GN-A266-06 12 39997808 39997808 C T ABCD2 Missense_Mutation p.G469E 0.58 deleterious(0.01) probably_damaging(0.927) TCGA-GN-A266-06 12 40716175 40716175 G A LRRK2 Nonsense_Mutation p.W1791* 0.38 TCGA-GN-A266-06 12 43862502 43862502 G A ADAMTS20 Missense_Mutation p.S375L 0.65 deleterious(0) benign(0.137) TCGA-GN-A266-06 12 43895992 43895992 G A ADAMTS20 Missense_Mutation p.S277L 0.59 tolerated(0.25) benign(0.039) TCGA-GN-A266-06 12 44238716 44238716 C T TMEM117 Missense_Mutation p.H88Y 0.62 tolerated(0.1) probably_damaging(0.969) TCGA-GN-A266-06 12 4554479 4554479 C T FGF6 Silent p.R86R 0.56 TCGA-GN-A266-06 12 46246002 46246002 A T ARID2 Nonsense_Mutation p.K1366* 0.69 TCGA-GN-A266-06 12 46591502 46591502 C T SLC38A1 Splice_Site p.X454_splice 0.61 TCGA-GN-A266-06 12 46592514 46592514 G A SLC38A1 Missense_Mutation p.S339F 0.43 deleterious(0) possibly_damaging(0.763) TCGA-GN-A266-06 12 46622947 46622947 G A SLC38A1 Silent p.I101I 0.54 TCGA-GN-A266-06 12 47160467 47160467 A T SLC38A4 3'UTR 0.82 TCGA-GN-A266-06 12 47172511 47172511 G A SLC38A4 Missense_Mutation p.H256Y 0.63 tolerated(0.5) benign(0.445) TCGA-GN-A266-06 12 48919720 48919720 C T OR8S1 Silent p.F102F 0.64 TCGA-GN-A266-06 12 48962868 48962868 C T LALBA Missense_Mutation p.D97N 0.58 tolerated(0.32) benign(0.078) TCGA-GN-A266-06 12 49169790 49169790 G A ADCY6 Missense_Mutation p.R588C 0.90 deleterious(0) probably_damaging(0.959) TCGA-GN-A266-06 12 51675282 51675282 T A BIN2 3'UTR 0.26 TCGA-GN-A266-06 12 51733658 51733658 G A CELA1 Missense_Mutation p.R199C 0.65 tolerated(0.07) benign(0.074) TCGA-GN-A266-06 12 51757921 51757921 C T GALNT6 Missense_Mutation p.E345K 0.42 tolerated(0.13) probably_damaging(0.999) TCGA-GN-A266-06 12 51853830 51853830 C T SLC4A8 Silent p.A317A 0.61 TCGA-GN-A266-06 12 51868847 51868847 G A SLC4A8 Missense_Mutation p.G677R 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 52827609 52827609 G A KRT75 Silent p.F160F 0.47 TCGA-GN-A266-06 12 53001914 53001914 C T KRT73 3'UTR 0.58 TCGA-GN-A266-06 12 53186500 53186500 C T KRT3 Missense_Mutation p.D340N 0.56 deleterious(0.02) possibly_damaging(0.545) TCGA-GN-A266-06 12 53200947 53200947 G A KRT4 Missense_Mutation p.S490F 0.60 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A266-06 12 53239986 53239986 C T KRT78 Missense_Mutation p.E251K 0.59 deleterious(0) possibly_damaging(0.755) TCGA-GN-A266-06 12 53647726 53647726 C T MFSD5 Silent p.I476I 0.64 TCGA-GN-A266-06 12 54348920 54348920 C T HOXC12 Silent p.L69L 0.65 TCGA-GN-A266-06 12 54756450 54756450 G A GPR84 Missense_Mutation p.H396Y 0.32 tolerated_low_confidence(0.26) benign(0) TCGA-GN-A266-06 12 54943669 54943669 C T PDE1B Missense_Mutation p.P5S 0.42 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-GN-A266-06 12 55028623 55028623 C T LACRT Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 12 55420357 55420357 G A NEUROD4 Missense_Mutation p.S45N 0.50 tolerated(0.49) benign(0.011) TCGA-GN-A266-06 12 55420389 55420389 G A NEUROD4 Missense_Mutation p.E56K 0.38 tolerated(0.18) possibly_damaging(0.678) TCGA-GN-A266-06 12 55420921 55420921 G A NEUROD4 Missense_Mutation p.G233E 0.70 tolerated(0.59) benign(0.016) TCGA-GN-A266-06 12 55886866 55886866 C T OR6C68 Silent p.A235A 0.50 TCGA-GN-A266-06 12 56625139 56625139 C T SLC39A5 Silent p.P27P 0.60 TCGA-GN-A266-06 12 57111841 57111841 G A NACA Intron 0.47 TCGA-GN-A266-06 12 5722088 5722088 G A ANO2 Silent p.F655F 0.61 TCGA-GN-A266-06 12 57423348 57423348 C T MYO1A Silent p.L916L 0.64 TCGA-GN-A266-06 12 57431726 57431726 C T MYO1A Missense_Mutation p.G630S 0.61 tolerated(0.68) benign(0.016) TCGA-GN-A266-06 12 57589508 57589508 C T LRP1 Silent p.F2835F 0.23 TCGA-GN-A266-06 12 57600306 57600306 C T LRP1 Silent p.L3881L 0.52 TCGA-GN-A266-06 12 57600440 57600440 C T LRP1 Silent p.S3925S 0.62 TCGA-GN-A266-06 12 57604507 57604507 C T LRP1 Missense_Mutation p.P4254L 0.57 probably_damaging(0.999) TCGA-GN-A266-06 12 57865069 57865069 C T GLI1 Missense_Mutation p.S849F 0.12 deleterious(0.01) possibly_damaging(0.677) TCGA-GN-A266-06 12 57969034 57969034 C T KIF5A Silent p.S628S 0.61 TCGA-GN-A266-06 12 5963220 5963220 G A ANO2 Missense_Mutation p.P204S 0.55 deleterious(0.02) possibly_damaging(0.791) TCGA-GN-A266-06 12 6094217 6094217 C T VWF Missense_Mutation p.E2324K 0.55 deleterious(0.04) possibly_damaging(0.874) TCGA-GN-A266-06 12 63541221 63541221 C T AVPR1A Missense_Mutation p.R392Q 0.63 tolerated(0.16) possibly_damaging(0.581) TCGA-GN-A266-06 12 64746706 64746706 G A C12orf56 Missense_Mutation p.P128L 0.73 tolerated_low_confidence(1) probably_damaging(0.999) TCGA-GN-A266-06 12 64819643 64819643 C T XPOT Missense_Mutation p.R541W 0.56 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 12 65514243 65514243 G A WIF1 Missense_Mutation p.P81L 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 12 66856701 66856701 C T GRIP1 Intron 0.21 TCGA-GN-A266-06 12 6749294 6749294 C T ACRBP Missense_Mutation p.D453N 0.58 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 12 6804782 6804782 C T PIANP Missense_Mutation p.G214E 0.55 tolerated_low_confidence(0.24) probably_damaging(0.969) TCGA-GN-A266-06 12 6806555 6806555 G A PIANP Missense_Mutation p.P141S 0.13 tolerated_low_confidence(0.49) possibly_damaging(0.803) TCGA-GN-A266-06 12 68619539 68619539 C T IL26 5'UTR 0.64 TCGA-GN-A266-06 12 70004117 70004117 C T LRRC10 Missense_Mutation p.E168K 0.14 tolerated(0.53) probably_damaging(0.926) TCGA-GN-A266-06 12 70150412 70150412 G A RAB3IP Missense_Mutation p.R176Q 0.56 tolerated(0.21) possibly_damaging(0.769) TCGA-GN-A266-06 12 70933413 70933413 C T PTPRB Missense_Mutation p.E1924K 0.56 deleterious(0) probably_damaging(0.99) TCGA-GN-A266-06 12 70954499 70954499 T C PTPRB Missense_Mutation p.T1462A 0.78 deleterious(0.03) possibly_damaging(0.833) TCGA-GN-A266-06 12 70963486 70963486 C T PTPRB Silent p.L1201L 0.71 TCGA-GN-A266-06 12 70986322 70986322 G A PTPRB Missense_Mutation p.P507L 0.63 deleterious(0) possibly_damaging(0.86) TCGA-GN-A266-06 12 7170352 7170352 T A C1S Silent p.A124A 0.20 TCGA-GN-A266-06 12 7252533 7252533 G A C1RL Missense_Mutation p.H194Y 0.62 tolerated(0.72) benign(0) TCGA-GN-A266-06 12 72893403 72893403 C T TRHDE Silent p.I525I 0.59 TCGA-GN-A266-06 12 7354848 7354848 C T PEX5 Silent p.F233F 0.61 TCGA-GN-A266-06 12 7559320 7559320 C T CD163L1 Missense_Mutation p.V299I 0.68 tolerated(0.73) possibly_damaging(0.751) TCGA-GN-A266-06 12 7585176 7585176 G A CD163L1 Missense_Mutation p.S201F 0.62 deleterious(0) benign(0.225) TCGA-GN-A266-06 12 7632515 7632515 C T CD163 Missense_Mutation p.E1141K 0.50 tolerated(1) benign(0) TCGA-GN-A266-06 12 78511887 78511887 T A NAV3 Missense_Mutation p.D950E 0.58 tolerated(0.89) benign(0.002) TCGA-GN-A266-06 12 78594372 78594372 G A NAV3 Splice_Site p.X2256_splice 0.66 TCGA-GN-A266-06 12 80014943 80014943 C T PAWR Silent p.R187R 0.17 TCGA-GN-A266-06 12 8023539 8023539 C T SLC2A14 5'UTR 0.78 TCGA-GN-A266-06 12 80714438 80714438 G A OTOGL Missense_Mutation p.D1338N 0.62 tolerated(0.3) benign(0.028) TCGA-GN-A266-06 12 80752495 80752495 G A OTOGL Missense_Mutation p.E2047K 0.52 tolerated(0.9) benign(0.005) TCGA-GN-A266-06 12 80761442 80761442 C T OTOGL Silent p.L2136L 1.00 TCGA-GN-A266-06 12 81112863 81112863 G A MYF5 3'UTR 0.13 TCGA-GN-A266-06 12 81678083 81678083 C T PPFIA2 Splice_Site p.X976_splice 0.59 TCGA-GN-A266-06 12 81734885 81734885 G A PPFIA2 Missense_Mutation p.P789S 0.57 tolerated(0.29) benign(0.126) TCGA-GN-A266-06 12 8196551 8196551 C T FOXJ2 Missense_Mutation p.S161F 0.71 deleterious(0.04) possibly_damaging(0.812) TCGA-GN-A266-06 12 8375251 8375251 T A FAM90A1 Nonsense_Mutation p.K188* 0.65 TCGA-GN-A266-06 12 85492772 85492772 G A LRRIQ1 Missense_Mutation p.S1070N 0.21 deleterious(0.03) possibly_damaging(0.907) TCGA-GN-A266-06 12 8757480 8757480 C T AICDA Missense_Mutation p.E156K 0.59 tolerated(0.78) benign(0.018) TCGA-GN-A266-06 12 88379725 88379725 C T C12orf50 Missense_Mutation p.R343K 0.58 deleterious(0.05) benign(0.088) TCGA-GN-A266-06 12 9303255 9303255 C T PZP Missense_Mutation p.D1457N 0.49 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 12 94642108 94642108 C T PLXNC1 Nonsense_Mutation p.Q900* 0.60 TCGA-GN-A266-06 12 95500772 95500772 C T FGD6 Silent p.G1125G 0.17 TCGA-GN-A266-06 12 96131721 96131721 A T NTN4 Missense_Mutation p.F263I 0.40 deleterious(0.01) possibly_damaging(0.555) TCGA-GN-A266-06 12 96384198 96384198 C T HAL Silent p.P276P 0.63 TCGA-GN-A266-06 12 97073515 97073515 C T C12orf55 Missense_Mutation p.L1901F 0.62 deleterious(0.02) possibly_damaging(0.736) TCGA-GN-A266-06 12 97137206 97137206 C T C12orf55 Missense_Mutation p.L2416F 0.48 deleterious(0.02) possibly_damaging(0.455) TCGA-GN-A266-06 13 101712206 101712206 C T NALCN Silent p.T1623T 0.44 TCGA-GN-A266-06 13 101717769 101717769 G A NALCN Missense_Mutation p.H1531Y 0.44 deleterious(0) probably_damaging(0.96) TCGA-GN-A266-06 13 101742293 101742293 G A NALCN Silent p.F1098F 0.14 TCGA-GN-A266-06 13 106142276 106142276 G A DAOA Missense_Mutation p.G103E 0.13 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-GN-A266-06 13 109707925 109707925 T C MYO16 Missense_Mutation p.F1084S 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 13 110436664 110436664 G A IRS2 Silent p.T579T 0.54 TCGA-GN-A266-06 13 110436665 110436665 G A IRS2 Missense_Mutation p.T579I 0.57 deleterious(0.01) probably_damaging(0.988) TCGA-GN-A266-06 13 110827673 110827673 G A COL4A1 Silent p.I1030I 0.40 TCGA-GN-A266-06 13 111980602 111980602 G A TEX29 Missense_Mutation p.C44Y 0.47 deleterious(0) possibly_damaging(0.588) TCGA-GN-A266-06 13 111980603 111980603 C A TEX29 Nonsense_Mutation p.C44* 0.47 TCGA-GN-A266-06 13 113333696 113333696 G A C13orf35 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) benign(0.043) TCGA-GN-A266-06 13 113899540 113899540 C T CUL4A Missense_Mutation p.H507Y 0.30 deleterious(0.01) benign(0.077) TCGA-GN-A266-06 13 114288335 114288335 G T TFDP1 Missense_Mutation p.C202F 0.18 tolerated(0.09) possibly_damaging(0.894) TCGA-GN-A266-06 13 115089630 115089630 C T CHAMP1 Missense_Mutation p.P105S 0.42 tolerated(0.99) benign(0.005) TCGA-GN-A266-06 13 23908129 23908129 G A SACS Missense_Mutation p.P3296S 0.45 probably_damaging(0.997) TCGA-GN-A266-06 13 23909674 23909674 G A SACS Missense_Mutation p.H2781Y 0.46 probably_damaging(0.979) TCGA-GN-A266-06 13 24334232 24334232 T A MIPEP Intron 0.35 TCGA-GN-A266-06 13 24895980 24895980 C T C1QTNF9 3'UTR 0.29 TCGA-GN-A266-06 13 25009566 25009566 C T PARP4 Missense_Mutation p.R1238Q 0.17 tolerated(0.6) benign(0.066) TCGA-GN-A266-06 13 25272843 25272843 G A ATP12A Missense_Mutation p.M526I 0.19 deleterious(0.04) benign(0.002) TCGA-GN-A266-06 13 25439030 25439030 G A RNF17 Nonsense_Mutation p.W1332* 0.62 TCGA-GN-A266-06 13 25671071 25671071 G A PABPC3 Silent p.Q245Q 0.09 TCGA-GN-A266-06 13 25894702 25894702 C T NUPL1 Missense_Mutation p.P249S 0.11 tolerated(0.29) benign(0.008) TCGA-GN-A266-06 13 27216450 27216450 C A WASF3 Silent p.R15R 0.31 TCGA-GN-A266-06 13 27256988 27256988 C T WASF3 Missense_Mutation p.P410S 0.20 tolerated(0.3) benign(0.024) TCGA-GN-A266-06 13 28562651 28562651 C A URAD Nonsense_Mutation p.E42* 0.13 TCGA-GN-A266-06 13 28562652 28562652 C T URAD Silent p.L41L 0.11 TCGA-GN-A266-06 13 29278211 29278211 G A SLC46A3 Silent p.F390F 0.41 TCGA-GN-A266-06 13 29601010 29601010 C T MTUS2 Silent p.F735F 0.14 TCGA-GN-A266-06 13 32367143 32367143 G A RXFP2 Silent p.G568G 0.33 TCGA-GN-A266-06 13 33012862 33012862 G A N4BP2L2 Missense_Mutation p.P721L 0.50 tolerated(0.16) possibly_damaging(0.593) TCGA-GN-A266-06 13 33629411 33629411 C T KL Missense_Mutation p.P520S 0.37 tolerated(0.07) possibly_damaging(0.764) TCGA-GN-A266-06 13 36428682 36428682 G A DCLK1 Missense_Mutation p.S330L 0.13 deleterious(0.02) possibly_damaging(0.519) TCGA-GN-A266-06 13 36744763 36744763 G A SOHLH2 Missense_Mutation p.H465Y 0.38 tolerated(0.2) possibly_damaging(0.893) TCGA-GN-A266-06 13 37016772 37016772 G A CCNA1 Missense_Mutation p.M456I 0.18 tolerated(0.98) benign(0.005) TCGA-GN-A266-06 13 37016791 37016791 C T CCNA1 Missense_Mutation p.L463F 0.15 tolerated(0.43) benign(0.252) TCGA-GN-A266-06 13 37427707 37427707 G A SMAD9 Missense_Mutation p.P370L 0.30 deleterious(0.02) benign(0.126) TCGA-GN-A266-06 13 37446863 37446863 G A SMAD9 Missense_Mutation p.P201L 0.09 deleterious(0.04) benign(0.028) TCGA-GN-A266-06 13 37446864 37446864 G T SMAD9 Missense_Mutation p.P201T 0.09 deleterious(0.02) benign(0.028) TCGA-GN-A266-06 13 38237762 38237762 G A TRPC4 Silent p.I493I 0.67 TCGA-GN-A266-06 13 39343905 39343905 C T FREM2 Silent p.F1867F 0.39 TCGA-GN-A266-06 13 39587218 39587218 G A PROSER1 Missense_Mutation p.S724L 0.09 deleterious_low_confidence(0.02) benign(0.202) TCGA-GN-A266-06 13 42259190 42259190 G A VWA8 Silent p.Y1440Y 0.50 TCGA-GN-A266-06 13 42407593 42407593 G A VWA8 Silent p.P500P 0.16 TCGA-GN-A266-06 13 43566154 43566154 C T EPSTI1 Missense_Mutation p.G50S 0.15 tolerated(1) benign(0.003) TCGA-GN-A266-06 13 47409563 47409563 C T HTR2A Silent p.R275R 0.39 TCGA-GN-A266-06 13 47409694 47409694 C T HTR2A Missense_Mutation p.D232N 0.37 tolerated(0.28) benign(0.019) TCGA-GN-A266-06 13 49951247 49951247 T A CAB39L Missense_Mutation p.K44N 0.15 deleterious(0.01) possibly_damaging(0.581) TCGA-GN-A266-06 13 50140794 50140794 G A RCBTB1 Silent p.L79L 0.20 TCGA-GN-A266-06 13 50235081 50235081 A G EBPL 3'UTR 0.31 TCGA-GN-A266-06 13 58299120 58299120 G A PCDH17 Missense_Mutation p.E1058K 0.10 deleterious_low_confidence(0.01) benign(0.152) TCGA-GN-A266-06 13 70535503 70535503 C T KLHL1 Missense_Mutation p.E252K 0.38 deleterious(0.02) probably_damaging(0.923) TCGA-GN-A266-06 13 72063191 72063191 G A DACH1 Missense_Mutation p.P556S 0.40 benign(0.32) TCGA-GN-A266-06 13 73401869 73401869 A G PIBF1 Splice_Site p.X306_splice 0.45 TCGA-GN-A266-06 13 76169099 76169099 C T UCHL3 Missense_Mutation p.H175Y 0.38 deleterious(0) possibly_damaging(0.839) TCGA-GN-A266-06 13 76381956 76381956 G A LMO7 Missense_Mutation p.E280K 0.11 deleterious(0.03) probably_damaging(0.911) TCGA-GN-A266-06 13 76397934 76397934 C T LMO7 Silent p.S725S 0.41 TCGA-GN-A266-06 13 76407271 76407271 C T LMO7 Missense_Mutation p.P779S 0.16 tolerated(1) benign(0.004) TCGA-GN-A266-06 13 86369507 86369507 C T SLITRK6 Missense_Mutation p.M379I 0.29 tolerated(0.4) benign(0) TCGA-GN-A266-06 13 92101047 92101047 C T GPC5 Missense_Mutation p.P66S 0.42 tolerated(0.31) benign(0.052) TCGA-GN-A266-06 13 93518546 93518546 G A GPC5 Missense_Mutation p.D525N 0.41 tolerated(0.18) benign(0.002) TCGA-GN-A266-06 13 95830019 95830019 G A ABCC4 Missense_Mutation p.L557F 0.51 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 13 95861831 95861831 G A ABCC4 Silent p.F214F 0.14 TCGA-GN-A266-06 13 98828564 98828564 C T RNF113B Silent p.A309A 0.36 TCGA-GN-A266-06 13 99947367 99947367 C T GPR183 Missense_Mutation p.E345K 0.27 deleterious(0.02) benign(0.445) TCGA-GN-A266-06 14 100603959 100603959 C A EVL Missense_Mutation p.P337T 0.47 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 14 100615378 100615378 C T DEGS2 Nonsense_Mutation p.W251* 0.15 TCGA-GN-A266-06 14 101005161 101005161 C T BEGAIN Silent p.E309E 0.38 TCGA-GN-A266-06 14 101492091 101492091 C T MIR323A RNA 0.37 TCGA-GN-A266-06 14 101493194 101493194 C T MIR329-1 RNA 0.30 TCGA-GN-A266-06 14 102028019 102028019 C T DIO3 Silent p.L62L 0.22 TCGA-GN-A266-06 14 102478443 102478443 C T DYNC1H1 Silent p.L2284L 0.18 TCGA-GN-A266-06 14 102495923 102495923 C T DYNC1H1 Silent p.T3172T 0.37 TCGA-GN-A266-06 14 102495924 102495924 C T DYNC1H1 Missense_Mutation p.P3173S 0.34 probably_damaging(0.99) TCGA-GN-A266-06 14 102516140 102516140 C T DYNC1H1 Silent p.S4535S 0.61 TCGA-GN-A266-06 14 105408164 105408164 G A AHNAK2 Missense_Mutation p.L4542F 0.18 possibly_damaging(0.821) TCGA-GN-A266-06 14 105414692 105414692 G A AHNAK2 Missense_Mutation p.L2366F 0.21 benign(0.02) TCGA-GN-A266-06 14 105517529 105517529 G A GPR132 Silent p.S315S 0.19 TCGA-GN-A266-06 14 105518133 105518133 G A GPR132 Missense_Mutation p.A114V 0.32 tolerated(0.06) benign(0.34) TCGA-GN-A266-06 14 105518156 105518156 G C GPR132 Missense_Mutation p.H106Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 14 105688140 105688140 C T BRF1 Missense_Mutation p.G387D 0.40 tolerated(0.4) benign(0.003) TCGA-GN-A266-06 14 106091374 106091374 C A IGHG4 Nonsense_Mutation p.E174* 0.13 TCGA-GN-A266-06 14 106091375 106091375 C T IGHG4 Silent p.E173E 0.13 TCGA-GN-A266-06 14 106208404 106208404 C T IGHG1 Missense_Mutation p.E166K 0.23 tolerated(0.26) benign(0.043) TCGA-GN-A266-06 14 106321636 106321636 C T IGHM Missense_Mutation p.D200N 0.25 deleterious(0.01) benign(0.376) TCGA-GN-A266-06 14 106452752 106452752 G A IGHV1-2 Silent p.T90T 0.22 TCGA-GN-A266-06 14 106494363 106494363 G A IGHV2-5 Silent p.F43F 0.42 TCGA-GN-A266-06 14 106539350 106539350 C T IGHV1-8 Missense_Mutation p.G27E 0.62 deleterious(0.01) possibly_damaging(0.537) TCGA-GN-A266-06 14 106668031 106668031 C T IGHV3-20 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0.01) benign(0.308) TCGA-GN-A266-06 14 106757818 106757818 C T IGHV2-26 Silent p.G63G 0.47 TCGA-GN-A266-06 14 107170136 107170136 C T IGHV1-69 Missense_Mutation p.S49N 0.15 deleterious(0.04) benign(0.008) TCGA-GN-A266-06 14 107178886 107178886 G A IGHV2-70 Silent p.N97N 0.36 TCGA-GN-A266-06 14 107199186 107199186 C T IGHV3-72 Missense_Mutation p.G35R 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.802) TCGA-GN-A266-06 14 107199206 107199206 C T IGHV3-72 Missense_Mutation p.G28E 0.37 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-GN-A266-06 14 107211187 107211187 C T IGHV3-73 Silent p.G34G 0.33 TCGA-GN-A266-06 14 19563653 19563653 C T POTEG Intron 0.24 TCGA-GN-A266-06 14 20248579 20248579 C T OR4M1 Missense_Mutation p.S33F 0.08 tolerated(0.52) benign(0.001) TCGA-GN-A266-06 14 20248730 20248730 A G OR4M1 Missense_Mutation p.I83M 0.12 tolerated(0.12) benign(0.002) TCGA-GN-A266-06 14 20296445 20296445 C T OR4N2 Missense_Mutation p.P280S 0.09 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 14 20344752 20344752 G A OR4K2 Missense_Mutation p.G109E 0.08 deleterious(0) probably_damaging(0.957) TCGA-GN-A266-06 14 20404079 20404079 T G OR4K1 Missense_Mutation p.F85C 0.09 deleterious(0) possibly_damaging(0.759) TCGA-GN-A266-06 14 20404458 20404458 C T OR4K1 Silent p.F211F 0.08 TCGA-GN-A266-06 14 20404640 20404640 C T OR4K1 Missense_Mutation p.S272F 0.07 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.19 TCGA-GN-A266-06 14 20502813 20502813 G A OR4K13 Silent p.F35F 0.31 TCGA-GN-A266-06 14 20502859 20502859 G A OR4K13 Missense_Mutation p.S20F 0.23 deleterious(0.01) benign(0.02) TCGA-GN-A266-06 14 20586527 20586527 G A OR4K17 Missense_Mutation p.R321K 0.11 deleterious(0) possibly_damaging(0.577) TCGA-GN-A266-06 14 20666271 20666271 C T OR11G2 Silent p.V259V 0.17 TCGA-GN-A266-06 14 20864104 20864104 G A TEP1 Missense_Mutation p.S555L 0.20 deleterious(0.03) benign(0.141) TCGA-GN-A266-06 14 21025105 21025105 C T RNASE9 Missense_Mutation p.E47K 0.13 tolerated(0.09) probably_damaging(0.953) TCGA-GN-A266-06 14 21052174 21052174 C T RNASE11 Missense_Mutation p.E154K 0.27 tolerated(0.26) benign(0.265) TCGA-GN-A266-06 14 21215935 21215935 C T EDDM3A Missense_Mutation p.H66Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 14 21789447 21789447 G A RPGRIP1 Silent p.K499K 0.41 TCGA-GN-A266-06 14 22090085 22090085 C T TRAV1-1 Missense_Mutation p.S10F 0.22 tolerated(0.76) benign(0.006) TCGA-GN-A266-06 14 22133687 22133687 C T OR4E2 Missense_Mutation p.H131Y 0.44 deleterious(0.05) possibly_damaging(0.616) TCGA-GN-A266-06 14 22356669 22356669 C T TRAV12-2 Silent p.L109L 0.16 TCGA-GN-A266-06 14 22386364 22386364 G A TRAV13-2 5'UTR 0.29 TCGA-GN-A266-06 14 22409825 22409825 G A TRAV9-2 Silent p.A105A 0.36 TCGA-GN-A266-06 14 22471402 22471402 C T TRAV18 5'UTR 0.66 TCGA-GN-A266-06 14 22521032 22521032 G A TRAV21 Missense_Mutation p.S18N 0.45 tolerated(0.11) benign(0.436) TCGA-GN-A266-06 14 22564750 22564750 C T TRDV1 Silent p.F67F 0.24 TCGA-GN-A266-06 14 22600917 22600917 G A TRAV8-7 Missense_Mutation p.E88K 0.15 tolerated(0.15) benign(0.102) TCGA-GN-A266-06 14 22933266 22933266 G A TRDC Silent p.K139K 0.30 TCGA-GN-A266-06 14 23354209 23354209 G A REM2 Missense_Mutation p.E144K 0.47 tolerated(0.06) benign(0.321) TCGA-GN-A266-06 14 23370842 23370842 G A RBM23 3'UTR 0.17 TCGA-GN-A266-06 14 23523522 23523522 G A CDH24 Missense_Mutation p.S267F 0.32 tolerated(0.06) probably_damaging(0.992) TCGA-GN-A266-06 14 23854192 23854192 G A MYH6 Missense_Mutation p.S1741L 0.26 tolerated(0.09) benign(0.013) TCGA-GN-A266-06 14 23855677 23855677 G A MYH6 Silent p.S1602S 0.14 TCGA-GN-A266-06 14 24040512 24040512 G A JPH4 Silent p.C476C 0.14 TCGA-GN-A266-06 14 24552079 24552079 G A NRL 5'UTR 0.20 TCGA-GN-A266-06 14 24676380 24676380 G A TSSK4 Missense_Mutation p.D167N 0.45 tolerated(0.05) probably_damaging(0.999) TCGA-GN-A266-06 14 24680673 24680673 G A CHMP4A Missense_Mutation p.L146F 0.19 deleterious(0.05) benign(0.262) TCGA-GN-A266-06 14 24765783 24765783 G T DHRS1 Missense_Mutation p.N102K 0.13 tolerated(0.51) benign(0.008) TCGA-GN-A266-06 14 24771528 24771528 C T NOP9 Silent p.L347L 0.23 TCGA-GN-A266-06 14 24791356 24791356 C T ADCY4 Missense_Mutation p.M834I 0.50 deleterious(0) probably_damaging(0.942) TCGA-GN-A266-06 14 24839278 24839278 G A NFATC4 Nonsense_Mutation p.W288* 0.15 TCGA-GN-A266-06 14 24975482 24975482 C T CMA1 Missense_Mutation p.E118K 0.18 tolerated(0.71) benign(0.005) TCGA-GN-A266-06 14 24975483 24975483 C T CMA1 Silent p.K117K 0.16 TCGA-GN-A266-06 14 30102112 30102112 G A PRKD1 Missense_Mutation p.T452I 0.20 tolerated(0.11) possibly_damaging(0.742) TCGA-GN-A266-06 14 31381223 31381223 G A STRN3 Missense_Mutation p.P514S 0.35 tolerated(0.08) benign(0.204) TCGA-GN-A266-06 14 31598524 31598524 G A HECTD1 Silent p.S1351S 0.49 TCGA-GN-A266-06 14 31642629 31642629 G A HECTD1 Missense_Mutation p.L297F 0.42 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 14 33290821 33290821 C T AKAP6 Missense_Mutation p.H1268Y 0.23 tolerated(0.26) benign(0.032) TCGA-GN-A266-06 14 33684385 33684385 C T NPAS3 Intron 0.17 TCGA-GN-A266-06 14 35478029 35478029 T A SRP54 Missense_Mutation p.F159L 0.22 deleterious(0) possibly_damaging(0.765) TCGA-GN-A266-06 14 35786612 35786612 C T PSMA6 3'UTR 0.22 TCGA-GN-A266-06 14 35872485 35872485 G A NFKBIA Nonsense_Mutation p.R140* 0.16 TCGA-GN-A266-06 14 37145722 37145722 C T PAX9 3'UTR 0.50 TCGA-GN-A266-06 14 37153959 37153959 G A SLC25A21 Nonsense_Mutation p.Q259* 0.17 TCGA-GN-A266-06 14 37153963 37153963 G A SLC25A21 Silent p.V257V 0.16 TCGA-GN-A266-06 14 37739697 37739697 G A MIPOL1 Missense_Mutation p.E154K 0.44 tolerated(0.05) benign(0.098) TCGA-GN-A266-06 14 38724495 38724495 G A CLEC14A Missense_Mutation p.P245S 0.15 tolerated(0.24) benign(0.199) TCGA-GN-A266-06 14 39304946 39304946 G A LINC00639 RNA 0.45 TCGA-GN-A266-06 14 39790138 39790138 C T CTAGE5 Missense_Mutation p.S522F 0.37 deleterious(0.03) benign(0.315) TCGA-GN-A266-06 14 42356279 42356279 G A LRFN5 Missense_Mutation p.E151K 0.23 deleterious(0) possibly_damaging(0.879) TCGA-GN-A266-06 14 42360456 42360456 G A LRFN5 Missense_Mutation p.M463I 0.24 tolerated(0.2) possibly_damaging(0.905) TCGA-GN-A266-06 14 45369720 45369720 C T C14orf28 Missense_Mutation p.P28S 0.14 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-GN-A266-06 14 45400586 45400586 G A KLHL28 Missense_Mutation p.P501L 0.15 deleterious(0.02) possibly_damaging(0.838) TCGA-GN-A266-06 14 45400587 45400587 G A KLHL28 Missense_Mutation p.P501S 0.15 deleterious(0) possibly_damaging(0.897) TCGA-GN-A266-06 14 45633685 45633685 C T FANCM Missense_Mutation p.R569C 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 14 47120333 47120333 G A RPL10L Missense_Mutation p.H203Y 0.18 deleterious(0.03) benign(0.005) TCGA-GN-A266-06 14 50655308 50655308 G A SOS2 Silent p.I207I 0.24 TCGA-GN-A266-06 14 50732104 50732104 G A L2HGDH Missense_Mutation p.P390S 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 14 51398399 51398399 C T PYGL Missense_Mutation p.G174R 0.17 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 14 51716210 51716210 G A TMX1 Missense_Mutation p.D172N 0.15 tolerated(0.31) benign(0.008) TCGA-GN-A266-06 14 52781482 52781482 C T PTGER2 Silent p.T72T 0.40 TCGA-GN-A266-06 14 53348143 53348143 G A FERMT2 Missense_Mutation p.P191S 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-GN-A266-06 14 54417562 54417562 G A BMP4 Missense_Mutation p.R139C 0.44 deleterious(0) probably_damaging(0.977) TCGA-GN-A266-06 14 55647984 55647984 C T DLGAP5 Missense_Mutation p.R176Q 0.38 tolerated(1) benign(0) TCGA-GN-A266-06 14 55907199 55907199 G A TBPL2 Missense_Mutation p.P22L 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.726) TCGA-GN-A266-06 14 55907200 55907200 G T TBPL2 Missense_Mutation p.P22T 0.34 tolerated_low_confidence(0.11) possibly_damaging(0.641) TCGA-GN-A266-06 14 56763339 56763339 C T PELI2 Silent p.L240L 0.47 TCGA-GN-A266-06 14 57268471 57268471 C T OTX2 Nonsense_Mutation p.W292* 0.09 TCGA-GN-A266-06 14 57268766 57268766 C T OTX2 Missense_Mutation p.S194N 0.47 tolerated(0.29) benign(0.012) TCGA-GN-A266-06 14 57676445 57676445 G A EXOC5 Missense_Mutation p.S593F 0.56 deleterious(0.03) possibly_damaging(0.665) TCGA-GN-A266-06 14 57938251 57938251 C T C14orf105 Nonsense_Mutation p.W238* 0.25 TCGA-GN-A266-06 14 58055999 58055999 G A SLC35F4 Silent p.F210F 0.26 TCGA-GN-A266-06 14 58063540 58063540 C T SLC35F4 Missense_Mutation p.G26S 0.33 tolerated_low_confidence(0.41) benign(0) TCGA-GN-A266-06 14 58598337 58598337 G A C14orf37 Missense_Mutation p.P575L 0.45 tolerated(0.8) possibly_damaging(0.851) TCGA-GN-A266-06 14 58895132 58895132 T C KIAA0586 Silent p.N62N 0.42 TCGA-GN-A266-06 14 61115468 61115468 G C SIX1 Missense_Mutation p.P147R 0.23 tolerated(0.35) probably_damaging(0.911) TCGA-GN-A266-06 14 62536387 62536387 A C SYT16 Missense_Mutation p.Q197P 0.44 deleterious(0) probably_damaging(0.969) TCGA-GN-A266-06 14 62551016 62551016 C T SYT16 Missense_Mutation p.L513F 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 14 63246599 63246599 G A KCNH5 Silent p.T622T 0.14 TCGA-GN-A266-06 14 64473769 64473769 C T SYNE2 Missense_Mutation p.S1469L 0.13 benign(0.034) TCGA-GN-A266-06 14 64681136 64681136 C T SYNE2 Silent p.G6427G 0.26 TCGA-GN-A266-06 14 64683061 64683061 C T SYNE2 Missense_Mutation p.P6500S 0.18 benign(0.149) TCGA-GN-A266-06 14 65249076 65249076 C T SPTB Missense_Mutation p.D1400N 0.48 tolerated(0.24) benign(0.143) TCGA-GN-A266-06 14 66208857 66208857 C T FUT8 Missense_Mutation p.A486V 0.10 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 14 68114885 68114885 G A ARG2 Missense_Mutation p.E282K 0.09 tolerated(0.07) probably_damaging(0.925) TCGA-GN-A266-06 14 68244434 68244434 C T ZFYVE26 Missense_Mutation p.D1606N 0.22 deleterious(0) possibly_damaging(0.787) TCGA-GN-A266-06 14 70461189 70461189 G A SMOC1 Missense_Mutation p.R219K 0.45 tolerated(0.48) benign(0.006) TCGA-GN-A266-06 14 70712964 70712964 C T ADAM21P1 RNA 0.47 TCGA-GN-A266-06 14 70713754 70713754 C T ADAM21P1 RNA 0.24 TCGA-GN-A266-06 14 71206780 71206780 G A MAP3K9 Missense_Mutation p.P557S 0.42 deleterious(0.02) probably_damaging(0.977) TCGA-GN-A266-06 14 72191409 72191409 G A SIPA1L1 Missense_Mutation p.E1512K 0.43 tolerated(0.9) benign(0.132) TCGA-GN-A266-06 14 72196769 72196769 C T SIPA1L1 Intron 0.15 TCGA-GN-A266-06 14 72202035 72202035 C T SIPA1L1 Missense_Mutation p.R1705C 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A266-06 14 72985178 72985178 C T RGS6 Missense_Mutation p.S404F 0.48 deleterious(0) probably_damaging(0.915) TCGA-GN-A266-06 14 73735314 73735314 G A PAPLN Missense_Mutation p.D1157N 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-GN-A266-06 14 73976137 73976137 G A HEATR4 Silent p.A533A 0.16 TCGA-GN-A266-06 14 74759339 74759340 - G ABCD4 Frame_Shift_Ins p.F315Lfs*76 0.16 TCGA-GN-A266-06 14 74824241 74824241 C T VRTN Missense_Mutation p.P252L 0.44 deleterious(0.02) benign(0.054) TCGA-GN-A266-06 14 75017968 75017968 C T LTBP2 Silent p.R495R 0.67 TCGA-GN-A266-06 14 75052711 75052711 C T LTBP2 Missense_Mutation p.E226K 0.58 deleterious(0.05) probably_damaging(0.993) TCGA-GN-A266-06 14 75264365 75264365 C T YLPM1 Missense_Mutation p.R789C 0.45 probably_damaging(0.931) TCGA-GN-A266-06 14 75513753 75513753 G A MLH3 Missense_Mutation p.S869L 0.15 tolerated(0.05) benign(0.025) TCGA-GN-A266-06 14 76964706 76964706 G A ESRRB Missense_Mutation p.A403T 0.28 deleterious(0.02) probably_damaging(0.973) TCGA-GN-A266-06 14 77257025 77257025 G A ANGEL1 Missense_Mutation p.P594L 0.46 deleterious(0.05) probably_damaging(0.992) TCGA-GN-A266-06 14 77705801 77705801 G A TMEM63C Missense_Mutation p.D258N 0.39 tolerated(0.52) benign(0.056) TCGA-GN-A266-06 14 77901727 77901727 G A VIPAS39 Missense_Mutation p.R308C 0.13 deleterious(0.02) benign(0.035) TCGA-GN-A266-06 14 77941899 77941899 C T ISM2 3'UTR 0.15 TCGA-GN-A266-06 14 77978671 77978671 C T SPTLC2 Missense_Mutation p.D549N 0.11 tolerated(0.11) benign(0.194) TCGA-GN-A266-06 14 78365596 78365596 T C ADCK1 Silent p.L246L 0.21 TCGA-GN-A266-06 14 79175599 79175599 C T NRXN3 Missense_Mutation p.R48C 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 14 79175824 79175824 G A NRXN3 Missense_Mutation p.D123N 0.36 tolerated(0.08) probably_damaging(0.957) TCGA-GN-A266-06 14 81609650 81609650 C T TSHR Silent p.F416F 0.14 TCGA-GN-A266-06 14 81658868 81658868 C T GTF2A1 Missense_Mutation p.E310K 0.09 deleterious(0) benign(0.178) TCGA-GN-A266-06 14 81743923 81743923 C T STON2 Missense_Mutation p.E578K 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-GN-A266-06 14 86089609 86089609 G A FLRT2 Missense_Mutation p.R584Q 0.40 deleterious(0.03) possibly_damaging(0.808) TCGA-GN-A266-06 14 88729611 88729611 C T KCNK10 Missense_Mutation p.E113K 0.41 tolerated(0.12) benign(0.024) TCGA-GN-A266-06 14 88729615 88729615 G A KCNK10 Silent p.A111A 0.33 TCGA-GN-A266-06 14 88729616 88729616 G A KCNK10 Missense_Mutation p.A111V 0.37 tolerated(0.46) possibly_damaging(0.577) TCGA-GN-A266-06 14 90755487 90755487 G A NRDE2 Silent p.V744V 0.35 TCGA-GN-A266-06 14 91123621 91123621 G A TTC7B Missense_Mutation p.S413F 0.28 tolerated(0.31) probably_damaging(0.996) TCGA-GN-A266-06 14 91749831 91749831 G A CCDC88C Missense_Mutation p.S1491F 0.40 deleterious(0.05) probably_damaging(0.999) TCGA-GN-A266-06 14 91760555 91760555 C T CCDC88C Silent p.E1358E 0.39 TCGA-GN-A266-06 14 91760556 91760556 T A CCDC88C Missense_Mutation p.E1358V 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 14 91776200 91776200 C T CCDC88C Intron 0.28 TCGA-GN-A266-06 14 91804373 91804373 C T CCDC88C Silent p.V342V 0.30 TCGA-GN-A266-06 14 92136311 92136311 C T CATSPERB Silent p.R378R 0.40 TCGA-GN-A266-06 14 92343975 92343975 G A FBLN5 Silent p.T347T 0.59 TCGA-GN-A266-06 14 92403309 92403309 C T FBLN5 Missense_Mutation p.E121K 0.37 tolerated(0.12) benign(0.115) TCGA-GN-A266-06 14 93994983 93994983 G A UNC79 Missense_Mutation p.R171K 0.35 tolerated(0.13) benign(0.425) TCGA-GN-A266-06 14 94071282 94071282 C T UNC79 Intron 0.36 TCGA-GN-A266-06 14 94752521 94752521 C T SERPINA10 Missense_Mutation p.G356E 0.23 deleterious(0) probably_damaging(0.978) TCGA-GN-A266-06 14 94914760 94914760 C T SERPINA11 Missense_Mutation p.G118S 0.45 tolerated(0.08) benign(0.204) TCGA-GN-A266-06 14 94929408 94929408 C T SERPINA9 3'UTR 0.42 TCGA-GN-A266-06 14 95030030 95030030 C T SERPINA4 Missense_Mutation p.P71S 0.16 tolerated(0.38) possibly_damaging(0.453) TCGA-GN-A266-06 14 95033528 95033528 G A SERPINA4 Missense_Mutation p.E291K 0.22 tolerated(0.07) possibly_damaging(0.665) TCGA-GN-A266-06 14 95053777 95053777 G A SERPINA5 Silent p.E26E 0.29 TCGA-GN-A266-06 14 95053780 95053780 G A SERPINA5 Missense_Mutation p.M27I 0.42 tolerated(0.19) benign(0.005) TCGA-GN-A266-06 14 95054273 95054273 G A SERPINA5 Missense_Mutation p.D192N 0.39 deleterious(0.05) possibly_damaging(0.772) TCGA-GN-A266-06 14 95570178 95570178 G A DICER1 Silent p.A1185A 0.42 TCGA-GN-A266-06 14 96152912 96152912 C T TCL1B Silent p.V36V 0.40 TCGA-GN-A266-06 14 96180377 96180377 C T TCL1A Silent p.E9E 0.48 TCGA-GN-A266-06 14 96706854 96706854 C T BDKRB2 Silent p.F63F 0.19 TCGA-GN-A266-06 14 96904217 96904217 G A AK7 Missense_Mutation p.G219R 0.51 deleterious(0) probably_damaging(0.983) TCGA-GN-A266-06 14 96949428 96949428 G A AK7 Missense_Mutation p.E616K 0.37 deleterious(0) probably_damaging(0.94) TCGA-GN-A266-06 14 99723868 99723868 C T BCL11B Missense_Mutation p.E123K 0.43 deleterious(0.01) benign(0.097) TCGA-GN-A266-06 14 99724148 99724148 G A BCL11B Silent p.I29I 0.23 TCGA-GN-A266-06 15 101031137 101031137 C T CERS3 Splice_Site p.X58_splice 0.27 TCGA-GN-A266-06 15 101562664 101562664 C T LRRK1 Silent p.I643I 0.23 TCGA-GN-A266-06 15 101865106 101865106 C T PCSK6 Missense_Mutation p.E775K 0.26 tolerated(0.18) benign(0.111) TCGA-GN-A266-06 15 102201982 102201982 G A TARSL2 Missense_Mutation p.H669Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-GN-A266-06 15 102242448 102242448 G A TARSL2 Silent p.I405I 0.33 TCGA-GN-A266-06 15 102346466 102346466 C T OR4F6 Missense_Mutation p.P182S 0.17 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-GN-A266-06 15 102462474 102462474 G A OR4F4 Silent p.F263F 0.32 TCGA-GN-A266-06 15 20193185 20193185 C T IGHV3OR15-7 Missense_Mutation p.G28E 0.27 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-GN-A266-06 15 20488839 20488839 C T CHEK2P2 RNA 0.18 TCGA-GN-A266-06 15 22368629 22368629 C T OR4M2 Silent p.S18S 0.33 TCGA-GN-A266-06 15 22383336 22383336 C T OR4N4 Silent p.T288T 0.33 TCGA-GN-A266-06 15 22473158 22473158 G A IGHV4OR15-8 Missense_Mutation p.S38F 0.14 deleterious(0.01) possibly_damaging(0.489) TCGA-GN-A266-06 15 23300012 23300012 G A HERC2P2 RNA 0.50 TCGA-GN-A266-06 15 23811028 23811028 C T MKRN3 Silent p.P33P 0.27 TCGA-GN-A266-06 15 23889479 23889479 G A MAGEL2 Silent p.F534F 0.26 TCGA-GN-A266-06 15 23889980 23889980 C T MAGEL2 Nonsense_Mutation p.W367* 0.18 TCGA-GN-A266-06 15 23890031 23890031 C T MAGEL2 Silent p.R350R 0.34 TCGA-GN-A266-06 15 24921258 24921258 C T NPAP1 Silent p.L82L 0.47 TCGA-GN-A266-06 15 24922969 24922969 C T NPAP1 Missense_Mutation p.P652L 0.24 tolerated(0.99) benign(0.001) TCGA-GN-A266-06 15 24923641 24923641 C T NPAP1 Missense_Mutation p.P876L 0.10 tolerated(0.16) probably_damaging(0.988) TCGA-GN-A266-06 15 24924049 24924049 G A NPAP1 Missense_Mutation p.G1012E 0.29 deleterious(0.02) possibly_damaging(0.898) TCGA-GN-A266-06 15 25207265 25207265 C T SNURF Missense_Mutation p.R7C 0.28 tolerated_low_confidence(0.2) benign(0) TCGA-GN-A266-06 15 25429530 25429530 G T SNORD115-8 RNA 0.27 TCGA-GN-A266-06 15 25434596 25434596 G C SNORD115-11 RNA 0.25 TCGA-GN-A266-06 15 25434615 25434615 C T SNORD115-11 RNA 0.28 TCGA-GN-A266-06 15 25477588 25477588 C T SNORD115-34 RNA 0.23 TCGA-GN-A266-06 15 25479454 25479454 C T SNORD115-35 RNA 0.30 TCGA-GN-A266-06 15 25494426 25494426 C T SNORD115-43 RNA 0.30 TCGA-GN-A266-06 15 30034858 30034858 G A TJP1 Missense_Mutation p.P380S 0.22 deleterious(0.05) benign(0.01) TCGA-GN-A266-06 15 31294043 31294043 G A TRPM1 Silent p.S1637S 0.26 TCGA-GN-A266-06 15 31342674 31342674 C T TRPM1 Missense_Mutation p.G476R 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-GN-A266-06 15 31862347 31862347 C T OTUD7A Missense_Mutation p.V69M 0.19 deleterious(0) probably_damaging(0.978) TCGA-GN-A266-06 15 33359009 33359009 C T FMN1 Silent p.K359K 0.35 TCGA-GN-A266-06 15 33954891 33954891 C T RYR3 Silent p.F1720F 0.22 TCGA-GN-A266-06 15 34032190 34032190 C T RYR3 Missense_Mutation p.T2605I 0.25 probably_damaging(1) TCGA-GN-A266-06 15 34129148 34129148 C G RYR3 Silent p.L3870L 0.29 TCGA-GN-A266-06 15 34145783 34145783 G A RYR3 Missense_Mutation p.G4567R 0.31 possibly_damaging(0.869) TCGA-GN-A266-06 15 34646835 34646835 G A NUTM1 Missense_Mutation p.E394K 0.15 tolerated(0.06) possibly_damaging(0.842) TCGA-GN-A266-06 15 35083473 35083473 C T ACTC1 Missense_Mutation p.E278K 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.895) TCGA-GN-A266-06 15 35085505 35085505 G A ACTC1 Missense_Mutation p.P132L 0.13 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-GN-A266-06 15 39544671 39544671 T A C15orf54 Missense_Mutation p.I112N 0.23 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-GN-A266-06 15 39874870 39874870 C T THBS1 Missense_Mutation p.P182S 0.34 deleterious(0.02) benign(0.2) TCGA-GN-A266-06 15 39879662 39879662 G A THBS1 Missense_Mutation p.R412Q 0.45 tolerated(0.61) benign(0.166) TCGA-GN-A266-06 15 39885651 39885651 G A THBS1 Missense_Mutation p.E1017K 0.31 tolerated(0.2) benign(0.343) TCGA-GN-A266-06 15 40018827 40018827 G A FSIP1 Missense_Mutation p.S338F 0.21 tolerated(0.75) benign(0.013) TCGA-GN-A266-06 15 40675107 40675107 C T KNSTRN Missense_Mutation p.S24F 0.62 deleterious_low_confidence(0.01) benign(0.118) TCGA-GN-A266-06 15 40866035 40866035 C T RPUSD2 Missense_Mutation p.P405S 0.17 tolerated(0.35) benign(0.006) TCGA-GN-A266-06 15 42067532 42067532 C T MAPKBP1 Missense_Mutation p.S20F 0.27 deleterious(0) probably_damaging(0.921) TCGA-GN-A266-06 15 42166142 42166142 G A SPTBN5 Silent p.I1597I 0.20 TCGA-GN-A266-06 15 42375522 42375522 C T PLA2G4D Silent p.K182K 0.32 TCGA-GN-A266-06 15 42375911 42375911 C T PLA2G4D Intron 0.30 TCGA-GN-A266-06 15 43075673 43075673 C T TTBK2 Missense_Mutation p.D381N 0.22 tolerated(0.09) probably_damaging(0.994) TCGA-GN-A266-06 15 43552275 43552275 G A TGM5 Silent p.I137I 0.17 TCGA-GN-A266-06 15 43552323 43552323 G A TGM5 Silent p.I121I 0.34 TCGA-GN-A266-06 15 43574084 43574084 C T TGM7 Missense_Mutation p.D437N 0.43 tolerated(0.27) possibly_damaging(0.701) TCGA-GN-A266-06 15 43813704 43813704 C T MAP1A Silent p.V11V 0.33 TCGA-GN-A266-06 15 43817595 43817595 G A MAP1A Silent p.A1308A 0.33 TCGA-GN-A266-06 15 43822464 43822464 C T MAP1A 3'UTR 0.23 TCGA-GN-A266-06 15 43900105 43900105 C T STRC Silent p.G1250G 0.29 TCGA-GN-A266-06 15 43991375 43991375 C T CKMT1A 3'UTR 0.42 TCGA-GN-A266-06 15 44037309 44037309 G A PDIA3 5'Flank 0.18 TCGA-GN-A266-06 15 44062468 44062468 C T PDIA3 Silent p.I429I 0.21 TCGA-GN-A266-06 15 44092969 44092969 C T HYPK Missense_Mutation p.S58F 0.20 deleterious(0.01) possibly_damaging(0.908) TCGA-GN-A266-06 15 44166556 44166556 C T FRMD5 Missense_Mutation p.E414K 0.22 tolerated(0.16) benign(0.011) TCGA-GN-A266-06 15 44705554 44705554 C T CASC4 Nonsense_Mutation p.Q421* 0.26 TCGA-GN-A266-06 15 44876629 44876629 G A SPG11 Missense_Mutation p.S1750F 0.23 deleterious(0.02) probably_damaging(0.919) TCGA-GN-A266-06 15 45389545 45389545 G A DUOX2 Silent p.F1246F 0.25 TCGA-GN-A266-06 15 45555390 45555390 A C SLC28A2 Missense_Mutation p.T132P 0.14 tolerated(0.29) benign(0.372) TCGA-GN-A266-06 15 45556876 45556876 G A SLC28A2 Silent p.S204S 0.30 TCGA-GN-A266-06 15 45556877 45556877 G A SLC28A2 Missense_Mutation p.G205S 0.29 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 15 45561668 45561668 C T SLC28A2 Nonsense_Mutation p.Q501* 0.35 TCGA-GN-A266-06 15 45723275 45723275 C T C15orf48 Missense_Mutation p.T38I 0.27 tolerated(0.05) benign(0.064) TCGA-GN-A266-06 15 45968449 45968449 G A SQRDL Missense_Mutation p.D269N 0.30 tolerated(0.12) probably_damaging(0.951) TCGA-GN-A266-06 15 48063557 48063557 C T SEMA6D Missense_Mutation p.P933S 0.11 tolerated(1) benign(0.004) TCGA-GN-A266-06 15 49437168 49437168 G A COPS2 Silent p.F54F 0.20 TCGA-GN-A266-06 15 49924493 49924493 C T DTWD1 Silent p.D134D 0.17 TCGA-GN-A266-06 15 50211080 50211080 G A ATP8B4 Missense_Mutation p.S664L 0.21 deleterious(0.05) benign(0.02) TCGA-GN-A266-06 15 50264922 50264922 C T ATP8B4 Missense_Mutation p.R367Q 0.19 tolerated(0.39) benign(0.014) TCGA-GN-A266-06 15 50545818 50545818 G A HDC Silent p.L256L 0.12 TCGA-GN-A266-06 15 50555459 50555459 C T HDC Silent p.G59G 0.16 TCGA-GN-A266-06 15 51535118 51535118 C T CYP19A1 5'UTR 0.39 TCGA-GN-A266-06 15 51676027 51676027 G A GLDN Missense_Mutation p.G160E 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 15 54305702 54305702 G A UNC13C Missense_Mutation p.S201N 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GN-A266-06 15 54919106 54919106 G A UNC13C Missense_Mutation p.R2147Q 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GN-A266-06 15 55497756 55497756 G A RAB27A Silent p.A205A 0.21 TCGA-GN-A266-06 15 56390286 56390286 G A RFX7 Missense_Mutation p.P367L 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A266-06 15 56993168 56993168 G A ZNF280D Missense_Mutation p.S115L 0.22 tolerated(0.12) benign(0.338) TCGA-GN-A266-06 15 57730485 57730485 G A CGNL1 Silent p.E96E 0.26 TCGA-GN-A266-06 15 62256067 62256067 C T VPS13C Missense_Mutation p.E1100K 0.37 tolerated(0.13) benign(0.422) TCGA-GN-A266-06 15 63089531 63089531 C T TLN2 Missense_Mutation p.T2055I 0.38 deleterious(0) probably_damaging(0.989) TCGA-GN-A266-06 15 64047438 64047438 A T HERC1 Missense_Mutation p.F540L 0.31 possibly_damaging(0.676) TCGA-GN-A266-06 15 64967027 64967027 C T ZNF609 Silent p.P658P 0.22 TCGA-GN-A266-06 15 65347594 65347594 C T RASL12 Silent p.E148E 0.33 TCGA-GN-A266-06 15 65411716 65411716 G A PDCD7 Silent p.I444I 0.25 TCGA-GN-A266-06 15 65495794 65495794 C T CILP Missense_Mutation p.V312M 0.26 tolerated(0.1) possibly_damaging(0.629) TCGA-GN-A266-06 15 65625743 65625743 A G IGDCC3 Silent p.P278P 0.29 TCGA-GN-A266-06 15 65964189 65964189 C T DENND4A Missense_Mutation p.E1468K 0.19 deleterious(0.04) benign(0.011) TCGA-GN-A266-06 15 66048628 66048628 G A DENND4A Missense_Mutation p.S54F 0.22 deleterious(0) probably_damaging(0.98) TCGA-GN-A266-06 15 67687867 67687867 C T IQCH Missense_Mutation p.P624L 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 15 69325563 69325563 C T NOX5 Silent p.V267V 0.22 TCGA-GN-A266-06 15 72122637 72122637 G A MYO9A Missense_Mutation p.R2285C 0.41 deleterious(0.02) possibly_damaging(0.667) TCGA-GN-A266-06 15 72455780 72455780 C T GRAMD2 Silent p.G261G 0.09 TCGA-GN-A266-06 15 74326924 74326924 C T PML Intron 0.29 TCGA-GN-A266-06 15 74707193 74707193 G A SEMA7A Missense_Mutation p.P361S 0.15 tolerated(0.07) possibly_damaging(0.577) TCGA-GN-A266-06 15 75047367 75047367 C T CYP1A2 Silent p.L497L 0.12 TCGA-GN-A266-06 15 75641615 75641615 G A NEIL1 Nonsense_Mutation p.W123* 0.39 TCGA-GN-A266-06 15 75931965 75931965 A G IMP3 Missense_Mutation p.L182P 0.32 deleterious(0) probably_damaging(0.95) TCGA-GN-A266-06 15 75977570 75977570 G A CSPG4 Missense_Mutation p.S1421F 0.20 deleterious(0) probably_damaging(0.947) TCGA-GN-A266-06 15 76075183 76075183 C T RN7SL319P 5'Flank 0.56 TCGA-GN-A266-06 15 76426582 76426582 C T C15orf27 5'UTR 0.47 TCGA-GN-A266-06 15 77770774 77770774 C T HMG20A Missense_Mutation p.R277C 0.08 deleterious(0.01) probably_damaging(0.917) TCGA-GN-A266-06 15 78466727 78466727 C T ACSBG1 Silent p.K614K 0.13 TCGA-GN-A266-06 15 78894485 78894485 G A CHRNA3 Missense_Mutation p.P167S 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 15 79320131 79320131 C T RASGRF1 Missense_Mutation p.E445K 0.45 deleterious(0.02) possibly_damaging(0.538) TCGA-GN-A266-06 15 80855474 80855474 C T ARNT2 Missense_Mutation p.R404C 0.26 deleterious(0) probably_damaging(0.911) TCGA-GN-A266-06 15 83561495 83561495 G A HOMER2 Missense_Mutation p.S35F 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 15 83784641 83784641 G A TM6SF1 Missense_Mutation p.G81R 0.11 deleterious(0) possibly_damaging(0.534) TCGA-GN-A266-06 15 83826717 83826717 C A HDGFRP3 Nonsense_Mutation p.G80* 0.25 TCGA-GN-A266-06 15 84287069 84287069 C T SH3GL3 3'UTR 0.50 TCGA-GN-A266-06 15 84651420 84651420 G A ADAMTSL3 Missense_Mutation p.E1014K 0.17 tolerated(0.32) benign(0.066) TCGA-GN-A266-06 15 85147151 85147151 G T ZSCAN2 5'UTR 0.29 TCGA-GN-A266-06 15 85326275 85326275 C T ZNF592 Silent p.F123F 0.39 TCGA-GN-A266-06 15 85383221 85383221 C T ALPK3 Silent p.V439V 0.35 TCGA-GN-A266-06 15 85399721 85399721 C T ALPK3 Silent p.I786I 0.28 TCGA-GN-A266-06 15 85406124 85406124 G A ALPK3 Missense_Mutation p.R1665K 0.10 tolerated(0.29) probably_damaging(0.997) TCGA-GN-A266-06 15 85461766 85461766 C T SLC28A1 Silent p.I269I 0.19 TCGA-GN-A266-06 15 88423518 88423518 G A NTRK3 Nonsense_Mutation p.Q773* 0.27 TCGA-GN-A266-06 15 88680699 88680699 G A NTRK3 Silent p.N186N 0.20 TCGA-GN-A266-06 15 88726711 88726711 C T NTRK3 Silent p.K111K 0.25 TCGA-GN-A266-06 15 89386841 89386841 C T ACAN Missense_Mutation p.P338L 0.26 deleterious(0.01) unknown(0) TCGA-GN-A266-06 15 89400292 89400292 T C ACAN Silent p.S1492S 0.31 TCGA-GN-A266-06 15 89400802 89400802 G A ACAN Silent p.V1662V 0.09 TCGA-GN-A266-06 15 89401939 89401939 C T ACAN Silent p.F2041F 0.31 TCGA-GN-A266-06 15 89760465 89760465 C T RLBP1 Missense_Mutation p.E78K 0.18 tolerated(0.33) benign(0.035) TCGA-GN-A266-06 15 90340908 90340908 G A ANPEP Silent p.F685F 0.29 TCGA-GN-A266-06 15 90444968 90444968 G A C15orf38 3'UTR 0.43 TCGA-GN-A266-06 15 92663747 92663747 C T SLCO3A1 Silent p.I354I 0.17 TCGA-GN-A266-06 15 92671613 92671613 C T SLCO3A1 Missense_Mutation p.S469L 0.11 deleterious(0.01) benign(0.126) TCGA-GN-A266-06 15 93007540 93007540 G A ST8SIA2 Silent p.E351E 0.14 TCGA-GN-A266-06 15 93588536 93588536 G A RGMA Missense_Mutation p.P357S 0.12 tolerated(0.24) benign(0.017) TCGA-GN-A266-06 15 94884146 94884146 A C MCTP2 Missense_Mutation p.K321T 0.28 deleterious(0.01) benign(0.027) TCGA-GN-A266-06 15 94884147 94884147 G A MCTP2 Silent p.K321K 0.28 TCGA-GN-A266-06 15 94899495 94899495 C T MCTP2 Nonsense_Mutation p.Q379* 0.32 TCGA-GN-A266-06 15 94927293 94927293 G A MCTP2 Missense_Mutation p.R542Q 0.29 deleterious(0) possibly_damaging(0.845) TCGA-GN-A266-06 15 95019957 95019957 C T MCTP2 Missense_Mutation p.P835S 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 15 99512832 99512832 C T PGPEP1L Missense_Mutation p.E65K 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 10273906 10273906 G A GRIN2A Silent p.F121F 0.36 TCGA-GN-A266-06 16 10525256 10525256 C T ATF7IP2 Missense_Mutation p.S260L 0.23 tolerated(0.15) benign(0.084) TCGA-GN-A266-06 16 11272318 11272318 G A CLEC16A Missense_Mutation p.S978N 0.16 tolerated_low_confidence(0.86) benign(0.001) TCGA-GN-A266-06 16 1129933 1129933 C T SSTR5 Silent p.A355A 0.53 TCGA-GN-A266-06 16 11362996 11362996 G A TNP2 Missense_Mutation p.R42C 0.31 tolerated(0.12) possibly_damaging(0.898) TCGA-GN-A266-06 16 11369680 11369680 G A PRM2 3'UTR 0.33 TCGA-GN-A266-06 16 12061492 12061492 C T TNFRSF17 Missense_Mutation p.L115F 0.43 tolerated(0.17) benign(0.132) TCGA-GN-A266-06 16 1270464 1270464 G A CACNA1H Missense_Mutation p.A2178T 0.27 tolerated(0.41) benign(0.011) TCGA-GN-A266-06 16 12758832 12758832 C T CPPED1 Missense_Mutation p.E286K 0.10 tolerated(0.09) benign(0.001) TCGA-GN-A266-06 16 1279611 1279611 G A TPSB2 Silent p.L63L 0.14 TCGA-GN-A266-06 16 14294218 14294218 T G MKL2 Intron 0.19 TCGA-GN-A266-06 16 14968912 14968912 C T NOMO1 Missense_Mutation p.P692S 0.32 deleterious(0.04) probably_damaging(0.919) TCGA-GN-A266-06 16 15168609 15168609 G A RRN3 Missense_Mutation p.S323F 0.22 deleterious(0) possibly_damaging(0.855) TCGA-GN-A266-06 16 15528612 15528612 G A C16orf45 Silent p.G34G 0.29 TCGA-GN-A266-06 16 15815375 15815375 C T MYH11 Silent p.E1501E 0.23 TCGA-GN-A266-06 16 15818718 15818718 C G NDE1 3'UTR 0.16 TCGA-GN-A266-06 16 15818719 15818719 C T NDE1 3'UTR 0.16 TCGA-GN-A266-06 16 15835382 15835382 C T MYH11 Missense_Mutation p.E940K 0.17 possibly_damaging(0.546) TCGA-GN-A266-06 16 15835512 15835512 C T MYH11 Silent p.K896K 0.17 TCGA-GN-A266-06 16 15854489 15854489 C T MYH11 Missense_Mutation p.G393R 0.09 probably_damaging(0.997) TCGA-GN-A266-06 16 1716430 1716430 C T CRAMP1L Silent p.I955I 0.24 TCGA-GN-A266-06 16 1811274 1811274 G A MAPK8IP3 Missense_Mutation p.E502K 0.17 tolerated(0.08) benign(0.025) TCGA-GN-A266-06 16 1836800 1836800 C T NUBP2 Missense_Mutation p.R60C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-GN-A266-06 16 18602603 18602603 C T ABCC6P1 RNA 0.34 TCGA-GN-A266-06 16 19032967 19032967 G A TMC7 Silent p.G159G 0.17 TCGA-GN-A266-06 16 19126433 19126433 C T ITPRIPL2 Missense_Mutation p.P217L 0.36 tolerated(0.15) benign(0.001) TCGA-GN-A266-06 16 19194956 19194956 G A SYT17 Silent p.R146R 0.18 TCGA-GN-A266-06 16 19641139 19641139 C T C16orf62 Silent p.F606F 0.29 TCGA-GN-A266-06 16 19745082 19745082 C T IQCK Silent p.S103S 0.33 TCGA-GN-A266-06 16 19883939 19883939 G A GPRC5B Missense_Mutation p.L77F 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 20328586 20328586 G A GP2 Silent p.F458F 0.21 TCGA-GN-A266-06 16 20451727 20451727 G A ACSM5 Missense_Mutation p.R573Q 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-GN-A266-06 16 20477025 20477025 G A ACSM2A Missense_Mutation p.V122M 0.27 deleterious(0.02) benign(0.237) TCGA-GN-A266-06 16 20491904 20491904 G A ACSM2A Missense_Mutation p.D431N 0.41 deleterious(0.02) benign(0.008) TCGA-GN-A266-06 16 20873618 20873618 G A DCUN1D3 Silent p.S81S 0.25 TCGA-GN-A266-06 16 20873619 20873619 G A DCUN1D3 Missense_Mutation p.S81F 0.25 tolerated(0.05) benign(0.033) TCGA-GN-A266-06 16 20996678 20996678 C T DNAH3 Silent p.K2462K 0.56 TCGA-GN-A266-06 16 21073850 21073850 T A DNAH3 Nonsense_Mutation p.K1225* 0.31 TCGA-GN-A266-06 16 21222689 21222689 G A ZP2 Silent p.F30F 0.33 TCGA-GN-A266-06 16 21709108 21709108 C T OTOA Missense_Mutation p.S251L 0.23 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 16 23197607 23197607 G A SCNN1G Silent p.E5E 0.24 TCGA-GN-A266-06 16 23387119 23387119 C T SCNN1B Silent p.L405L 0.24 TCGA-GN-A266-06 16 23767248 23767248 G A CHP2 Missense_Mutation p.G74E 0.38 tolerated(0.09) benign(0.3) TCGA-GN-A266-06 16 24046808 24046808 G A PRKCB Missense_Mutation p.E157K 0.41 tolerated(0.07) probably_damaging(0.982) TCGA-GN-A266-06 16 24104109 24104109 C T PRKCB Intron 0.19 TCGA-GN-A266-06 16 24196465 24196465 G A PRKCB Missense_Mutation p.D523N 0.15 deleterious(0.02) probably_damaging(0.952) TCGA-GN-A266-06 16 24268270 24268270 G A CACNG3 Silent p.R65R 0.25 TCGA-GN-A266-06 16 24573481 24573481 C T RBBP6 Missense_Mutation p.R430W 0.33 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-GN-A266-06 16 24873970 24873970 G A SLC5A11 Missense_Mutation p.G62R 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 24873971 24873971 G A SLC5A11 Missense_Mutation p.G62E 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 27441437 27441437 G A IL21R Silent p.Q15Q 0.47 TCGA-GN-A266-06 16 27733009 27733009 C T KIAA0556 Missense_Mutation p.A579V 0.20 tolerated(0.09) benign(0.044) TCGA-GN-A266-06 16 2813042 2813042 C T SRRM2 Missense_Mutation p.S838L 0.29 unknown(0) TCGA-GN-A266-06 16 2815393 2815393 C T SRRM2 Missense_Mutation p.P1622S 0.33 unknown(0) TCGA-GN-A266-06 16 28503105 28503105 G A CLN3 5'UTR 0.30 TCGA-GN-A266-06 16 2882116 2882116 C T ZG16B Missense_Mutation p.P195S 0.47 tolerated(0.09) possibly_damaging(0.577) TCGA-GN-A266-06 16 28914725 28914725 G A ATP2A1 Missense_Mutation p.E982K 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 16 28925752 28925752 G A RABEP2 Silent p.S233S 0.38 TCGA-GN-A266-06 16 29912865 29912865 C T ASPHD1 Silent p.F191F 0.20 TCGA-GN-A266-06 16 30199684 30199684 G A CORO1A Silent p.S356S 0.19 TCGA-GN-A266-06 16 30536387 30536387 G A ZNF768 Silent p.S358S 0.36 TCGA-GN-A266-06 16 30762575 30762575 C T PHKG2 Missense_Mutation p.R82C 0.44 deleterious(0) possibly_damaging(0.478) TCGA-GN-A266-06 16 30970485 30970485 C T SETD1A Missense_Mutation p.S75F 0.33 benign(0.027) TCGA-GN-A266-06 16 30982726 30982726 C T SETD1A Missense_Mutation p.S1015F 0.22 possibly_damaging(0.485) TCGA-GN-A266-06 16 31143543 31143543 C T PRSS8 Silent p.L273L 0.36 TCGA-GN-A266-06 16 31367283 31367283 G A ITGAX Missense_Mutation p.G36E 0.22 deleterious(0.04) benign(0.324) TCGA-GN-A266-06 16 321019 321019 C T RGS11 Missense_Mutation p.A315T 0.38 tolerated(0.35) benign(0.303) TCGA-GN-A266-06 16 3254555 3254555 C T OR1F1 Silent p.F103F 0.24 TCGA-GN-A266-06 16 3255033 3255033 C T OR1F1 Silent p.L263L 0.34 TCGA-GN-A266-06 16 3293195 3293195 C T MEFV Silent p.G764G 0.26 TCGA-GN-A266-06 16 3298943 3298943 C T MEFV Missense_Mutation p.R441Q 0.35 deleterious(0.03) probably_damaging(0.941) TCGA-GN-A266-06 16 3406776 3406776 C T OR2C1 Missense_Mutation p.S279L 0.20 deleterious(0) possibly_damaging(0.597) TCGA-GN-A266-06 16 461008 461008 C T DECR2 Missense_Mutation p.P198L 0.25 deleterious(0.02) benign(0.279) TCGA-GN-A266-06 16 46781992 46781992 C T MYLK3 Silent p.Q38Q 0.38 TCGA-GN-A266-06 16 46782142 46782142 G A MYLK3 5'UTR 0.58 TCGA-GN-A266-06 16 46956280 46956280 C T GPT2 Silent p.V388V 0.26 TCGA-GN-A266-06 16 47001557 47001557 G A DNAJA2 Nonsense_Mutation p.Q149* 0.21 TCGA-GN-A266-06 16 47644793 47644793 A G PHKB Missense_Mutation p.K474E 0.26 tolerated(0.31) benign(0.004) TCGA-GN-A266-06 16 48261857 48261857 G A ABCC11 Silent p.P85P 0.19 TCGA-GN-A266-06 16 48265854 48265854 C T ABCC11 5'UTR 0.36 TCGA-GN-A266-06 16 4827869 4827869 C T SEPT12 Missense_Mutation p.G336R 0.50 tolerated(0.23) benign(0.319) TCGA-GN-A266-06 16 49430414 49430414 C T C16orf78 Missense_Mutation p.P159S 0.33 tolerated(0.12) probably_damaging(0.947) TCGA-GN-A266-06 16 49433081 49433081 C T C16orf78 Silent p.L230L 0.37 TCGA-GN-A266-06 16 50325802 50325802 G A ADCY7 Silent p.G177G 0.28 TCGA-GN-A266-06 16 5053504 5053504 A C SEC14L5 Missense_Mutation p.N411T 0.17 deleterious(0) probably_damaging(0.911) TCGA-GN-A266-06 16 50733855 50733855 C T NOD2 Missense_Mutation p.P177L 0.21 tolerated(0.21) possibly_damaging(0.531) TCGA-GN-A266-06 16 51171035 51171035 G A SALL1 Silent p.I1321I 0.15 TCGA-GN-A266-06 16 51171368 51171368 G A SALL1 Silent p.P1210P 0.21 TCGA-GN-A266-06 16 51172967 51172967 G A SALL1 Silent p.L1056L 0.34 TCGA-GN-A266-06 16 51173548 51173548 C T SALL1 Missense_Mutation p.S862N 0.25 deleterious(0.02) benign(0.077) TCGA-GN-A266-06 16 51175015 51175015 G A SALL1 Missense_Mutation p.S373L 0.31 deleterious(0) benign(0.178) TCGA-GN-A266-06 16 51175867 51175867 G A SALL1 Missense_Mutation p.P89L 0.12 tolerated(0.09) benign(0.002) TCGA-GN-A266-06 16 53476717 53476717 C T RBL2 Silent p.I173I 0.34 TCGA-GN-A266-06 16 53675229 53675229 G A RPGRIP1L Missense_Mutation p.P948S 0.26 tolerated(0.16) benign(0.002) TCGA-GN-A266-06 16 55798809 55798809 C A CES1P1 RNA 0.62 TCGA-GN-A266-06 16 55880749 55880749 C T CES5A Missense_Mutation p.G505E 0.44 tolerated(0.54) benign(0.083) TCGA-GN-A266-06 16 55909216 55909216 C T CES5A Intron 0.33 TCGA-GN-A266-06 16 56916348 56916348 C T SLC12A3 Silent p.F536F 0.20 TCGA-GN-A266-06 16 57004978 57004978 C T CETP Silent p.F187F 0.25 TCGA-GN-A266-06 16 57005954 57005954 G A CETP Missense_Mutation p.D237N 0.19 tolerated(0.4) benign(0.006) TCGA-GN-A266-06 16 57060342 57060342 C T NLRC5 Missense_Mutation p.S496F 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-GN-A266-06 16 57254647 57254647 T C RSPRY1 Missense_Mutation p.L302S 0.21 deleterious(0) possibly_damaging(0.674) TCGA-GN-A266-06 16 57738868 57738868 G A CCDC135 Silent p.Q260Q 0.32 TCGA-GN-A266-06 16 57918121 57918121 C T CNGB1 Missense_Mutation p.E1235K 0.33 deleterious(0) probably_damaging(0.971) TCGA-GN-A266-06 16 57994767 57994767 G A CNGB1 Missense_Mutation p.P171S 0.30 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GN-A266-06 16 58030886 58030886 G A ZNF319 Silent p.F428F 0.22 TCGA-GN-A266-06 16 58031774 58031774 G A ZNF319 Silent p.F132F 0.31 TCGA-GN-A266-06 16 58438588 58438588 C T GINS3 Silent p.L241L 0.32 TCGA-GN-A266-06 16 61851631 61851631 C T CDH8 Silent p.L343L 0.33 TCGA-GN-A266-06 16 64981498 64981498 C T CDH11 3'UTR 0.38 TCGA-GN-A266-06 16 64981514 64981514 C T CDH11 Missense_Mutation p.D795N 0.19 tolerated_low_confidence(0.08) benign(0.013) TCGA-GN-A266-06 16 65022165 65022165 T C CDH11 Silent p.G298G 0.32 TCGA-GN-A266-06 16 65345409 65345409 C T LINC00922 RNA 0.21 TCGA-GN-A266-06 16 66423412 66423412 C T CDH5 Silent p.P256P 0.25 TCGA-GN-A266-06 16 66436656 66436656 G A CDH5 Missense_Mutation p.E647K 0.47 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 16 66947106 66947106 C T CDH16 Missense_Mutation p.D328N 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 67038103 67038103 G A CES4A Silent p.L352L 0.23 TCGA-GN-A266-06 16 67863357 67863357 G A CENPT Missense_Mutation p.L417F 0.36 tolerated(0.14) benign(0.022) TCGA-GN-A266-06 16 68108047 68108047 C T DUS2 Silent p.S307S 0.39 TCGA-GN-A266-06 16 69922004 69922004 C T WWP2 Missense_Mutation p.P256S 0.35 tolerated(0.43) benign(0.002) TCGA-GN-A266-06 16 70016326 70016326 G A PDXDC2P RNA 0.21 TCGA-GN-A266-06 16 70311043 70311043 G A AARS Silent p.F53F 0.29 TCGA-GN-A266-06 16 70843784 70843784 C T HYDIN Missense_Mutation p.E4929K 0.34 possibly_damaging(0.801) TCGA-GN-A266-06 16 70897082 70897082 G A HYDIN Silent p.F3825F 0.19 TCGA-GN-A266-06 16 70908764 70908764 G A HYDIN Missense_Mutation p.T3539I 0.29 probably_damaging(0.934) TCGA-GN-A266-06 16 70913626 70913626 C T HYDIN Missense_Mutation p.E3417K 0.12 possibly_damaging(0.801) TCGA-GN-A266-06 16 70926315 70926315 G A HYDIN Silent p.F3122F 0.14 TCGA-GN-A266-06 16 70935048 70935048 C T HYDIN Silent p.R2969R 0.15 TCGA-GN-A266-06 16 70942224 70942224 C T HYDIN Missense_Mutation p.G2776E 0.36 probably_damaging(0.988) TCGA-GN-A266-06 16 70977742 70977742 G A HYDIN Silent p.L2214L 0.21 TCGA-GN-A266-06 16 71012908 71012908 C T HYDIN Missense_Mutation p.R1516K 0.16 possibly_damaging(0.87) TCGA-GN-A266-06 16 71054220 71054220 T G HYDIN Missense_Mutation p.K1063Q 0.31 probably_damaging(0.978) TCGA-GN-A266-06 16 71127722 71127722 C T HYDIN Missense_Mutation p.E482K 0.19 probably_damaging(0.943) TCGA-GN-A266-06 16 71163701 71163701 C T HYDIN Missense_Mutation p.E357K 0.24 probably_damaging(0.953) TCGA-GN-A266-06 16 71423714 71423714 G A CALB2 Silent p.G254G 0.16 TCGA-GN-A266-06 16 71482251 71482251 G A ZNF23 Silent p.P559P 0.43 TCGA-GN-A266-06 16 71570729 71570729 C T CHST4 Missense_Mutation p.S50F 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 71570864 71570864 G A CHST4 Missense_Mutation p.R95Q 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 71606461 71606461 C T TAT Missense_Mutation p.G180E 0.27 deleterious(0.02) probably_damaging(0.98) TCGA-GN-A266-06 16 71674741 71674741 G A MARVELD3 Nonsense_Mutation p.W348* 0.31 TCGA-GN-A266-06 16 71712746 71712746 C T PHLPP2 Missense_Mutation p.D394N 0.10 deleterious(0) possibly_damaging(0.501) TCGA-GN-A266-06 16 71807241 71807241 G A AP1G1 Silent p.F117F 0.11 TCGA-GN-A266-06 16 720927 720927 C T RHOT2 Silent p.A225A 0.44 TCGA-GN-A266-06 16 7382924 7382924 G A RBFOX1 5'UTR 0.39 TCGA-GN-A266-06 16 74455130 74455130 G A CLEC18B Silent p.L13L 0.08 TCGA-GN-A266-06 16 74666518 74666518 G A RFWD3 Missense_Mutation p.P494S 0.24 tolerated(0.09) benign(0.411) TCGA-GN-A266-06 16 74709572 74709572 G A MLKL Missense_Mutation p.L377F 0.30 tolerated(0.14) benign(0.005) TCGA-GN-A266-06 16 75669881 75669881 G A KARS Missense_Mutation p.P228S 0.38 deleterious(0.04) possibly_damaging(0.785) TCGA-GN-A266-06 16 76389361 76389361 G A CNTNAP4 Missense_Mutation p.D90N 0.19 deleterious(0) benign(0.434) TCGA-GN-A266-06 16 76482679 76482679 C T CNTNAP4 Missense_Mutation p.P228L 0.23 tolerated(0.69) benign(0.012) TCGA-GN-A266-06 16 80718592 80718592 C T CDYL2 Silent p.Q153Q 0.16 TCGA-GN-A266-06 16 81075941 81075941 C T ATMIN Missense_Mutation p.S173L 0.44 tolerated(0.14) possibly_damaging(0.614) TCGA-GN-A266-06 16 81819622 81819622 C T PLCG2 Missense_Mutation p.L10F 0.23 deleterious(0.02) possibly_damaging(0.901) TCGA-GN-A266-06 16 81888096 81888096 G A PLCG2 Missense_Mutation p.D81N 0.27 deleterious(0.02) benign(0.059) TCGA-GN-A266-06 16 82032727 82032727 G A SDR42E1 Silent p.L391L 0.25 TCGA-GN-A266-06 16 82033103 82033103 G A SDR42E1 Silent p.F265F 0.30 TCGA-GN-A266-06 16 82033237 82033237 C T SDR42E1 Missense_Mutation p.E221K 0.41 deleterious(0.05) probably_damaging(0.938) TCGA-GN-A266-06 16 82034450 82034450 C T SDR42E1 Missense_Mutation p.R5K 0.19 tolerated(1) benign(0.001) TCGA-GN-A266-06 16 83065795 83065795 G A CDH13 Missense_Mutation p.G160E 0.21 tolerated(0.43) possibly_damaging(0.449) TCGA-GN-A266-06 16 83251002 83251002 G A CDH13 Missense_Mutation p.G226E 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 16 83704515 83704515 G A CDH13 Missense_Mutation p.G455R 0.23 tolerated(0.51) possibly_damaging(0.515) TCGA-GN-A266-06 16 84203719 84203719 G A DNAAF1 Missense_Mutation p.V429I 0.17 tolerated(0.44) benign(0.002) TCGA-GN-A266-06 16 84218584 84218584 G A TAF1C Missense_Mutation p.P4L 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 16 84230520 84230520 G A ADAD2 Silent p.L646L 0.26 TCGA-GN-A266-06 16 84255835 84255835 G A KCNG4 Silent p.I516I 0.26 TCGA-GN-A266-06 16 84270666 84270666 G A KCNG4 Silent p.S142S 0.14 TCGA-GN-A266-06 16 84456112 84456112 C T ATP2C2 Silent p.F247F 0.39 TCGA-GN-A266-06 16 85143948 85143948 C T FAM92B Missense_Mutation p.D47N 0.44 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 16 85721180 85721180 C T GINS2 Missense_Mutation p.G31R 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 16 88951529 88951529 C A CBFA2T3 Missense_Mutation p.A348S 0.25 tolerated(0.13) benign(0.119) TCGA-GN-A266-06 16 89655186 89655186 C T CPNE7 Missense_Mutation p.S419F 0.17 deleterious(0.02) possibly_damaging(0.74) TCGA-GN-A266-06 16 89858885 89858885 G A FANCA Silent p.Y359Y 0.19 TCGA-GN-A266-06 16 8990881 8990881 C A USP7 Missense_Mutation p.G932W 0.15 tolerated(0.07) benign(0.406) TCGA-GN-A266-06 16 9858327 9858327 G A GRIN2A Missense_Mutation p.S1025L 0.19 tolerated_low_confidence(0.12) benign(0.324) TCGA-GN-A266-06 16 9923464 9923464 A G GRIN2A Missense_Mutation p.L608P 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 17 10258308 10258308 G A MYH13 Silent p.L269L 0.64 TCGA-GN-A266-06 17 10265528 10265528 C T MYH13 Missense_Mutation p.E138K 0.35 tolerated(0.08) benign(0.016) TCGA-GN-A266-06 17 10267715 10267715 C T MYH13 Missense_Mutation p.E45K 0.31 tolerated(0.07) benign(0.187) TCGA-GN-A266-06 17 10298471 10298471 C T MYH8 Silent p.R1647R 0.57 TCGA-GN-A266-06 17 10304266 10304266 C T MYH8 Missense_Mutation p.E1089K 0.42 deleterious(0) possibly_damaging(0.582) TCGA-GN-A266-06 17 10307766 10307766 C T MYH8 Missense_Mutation p.E857K 0.18 tolerated(0.07) benign(0.371) TCGA-GN-A266-06 17 10321993 10321993 G A MYH8 Silent p.I160I 0.48 TCGA-GN-A266-06 17 10402081 10402081 C T MYH1 Missense_Mutation p.R1348Q 0.57 deleterious(0.03) possibly_damaging(0.836) TCGA-GN-A266-06 17 10412913 10412913 G A MYH1 Silent p.F492F 0.57 TCGA-GN-A266-06 17 10412965 10412965 C T MYH1 Missense_Mutation p.S475N 0.48 deleterious(0.03) benign(0.082) TCGA-GN-A266-06 17 10432014 10432014 T C MYH2 Missense_Mutation p.K1246R 0.19 tolerated(0.25) benign(0.061) TCGA-GN-A266-06 17 10432367 10432367 G A MYH2 Silent p.I1128I 0.66 TCGA-GN-A266-06 17 10440619 10440619 C T MYH2 Missense_Mutation p.G610R 0.48 deleterious(0.02) benign(0.26) TCGA-GN-A266-06 17 10443995 10443995 C T MYH2 Silent p.T308T 0.43 TCGA-GN-A266-06 17 11556254 11556254 G A DNAH9 Missense_Mutation p.D844N 0.26 benign(0.001) TCGA-GN-A266-06 17 11556305 11556305 C T DNAH9 Missense_Mutation p.H861Y 0.44 benign(0.434) TCGA-GN-A266-06 17 11583117 11583117 T C DNAH9 Silent p.L1133L 0.45 TCGA-GN-A266-06 17 11584087 11584087 G A DNAH9 Silent p.V1208V 0.43 TCGA-GN-A266-06 17 11592949 11592949 C T DNAH9 Silent p.S1270S 0.56 TCGA-GN-A266-06 17 11648291 11648291 C T DNAH9 Missense_Mutation p.L2097F 0.48 probably_damaging(0.987) TCGA-GN-A266-06 17 11666923 11666923 C T DNAH9 Nonsense_Mutation p.Q2388* 0.42 TCGA-GN-A266-06 17 12812265 12812265 A T ARHGAP44 Missense_Mutation p.I84F 0.56 tolerated(0.7) benign(0.027) TCGA-GN-A266-06 17 15212016 15212016 C T TEKT3 Silent p.P407P 0.52 TCGA-GN-A266-06 17 15519090 15519090 G A RP11-385D13.1 Missense_Mutation p.S490F 0.32 tolerated_low_confidence(1) benign(0.001) TCGA-GN-A266-06 17 1579318 1579318 C T PRPF8 Silent p.R861R 0.32 TCGA-GN-A266-06 17 16466462 16466462 G A ZNF287 Missense_Mutation p.P238L 0.53 deleterious(0.01) benign(0.295) TCGA-GN-A266-06 17 17700534 17700534 C T RAI1 Silent p.F1424F 0.47 TCGA-GN-A266-06 17 18082198 18082198 C T MYO15A 3'UTR 0.67 TCGA-GN-A266-06 17 18082199 18082199 C T MYO15A 3'UTR 0.67 TCGA-GN-A266-06 17 18671950 18671950 G A FBXW10 Missense_Mutation p.G603E 0.45 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 17 18673314 18673314 A T FBXW10 Missense_Mutation p.N641I 0.48 deleterious(0) probably_damaging(0.966) TCGA-GN-A266-06 17 19287824 19287824 C T MFAP4 Missense_Mutation p.G264D 0.54 deleterious(0.04) possibly_damaging(0.819) TCGA-GN-A266-06 17 20239232 20239232 C T RN7SL17P 5'Flank 0.44 TCGA-GN-A266-06 17 20361571 20361571 C G LGALS9B Missense_Mutation p.E86D 0.24 deleterious(0.03) probably_damaging(0.961) TCGA-GN-A266-06 17 20921375 20921375 G A USP22 Silent p.I190I 0.25 TCGA-GN-A266-06 17 25950394 25950394 G A KSR1 3'UTR 0.57 TCGA-GN-A266-06 17 26101376 26101376 C T NOS2 Nonsense_Mutation p.W461* 0.46 TCGA-GN-A266-06 17 26604151 26604151 C T AC061975.8 5'Flank 0.46 TCGA-GN-A266-06 17 26604187 26604187 C T AC061975.8 5'Flank 0.48 TCGA-GN-A266-06 17 29679366 29679366 C T NF1 Nonsense_Mutation p.R2517* 0.47 TCGA-GN-A266-06 17 3119431 3119431 G A OR1A1 Missense_Mutation p.E173K 0.47 tolerated(0.76) benign(0.026) TCGA-GN-A266-06 17 3300826 3300826 C T OR1E1 Silent p.R293R 0.51 TCGA-GN-A266-06 17 33457401 33457401 G A FNDC8 Missense_Mutation p.G308E 0.66 tolerated_low_confidence(0.13) benign(0.001) TCGA-GN-A266-06 17 33457462 33457462 G A NLE1 3'Flank 0.56 TCGA-GN-A266-06 17 34074268 34074268 G A GAS2L2 Silent p.F284F 0.59 TCGA-GN-A266-06 17 34264881 34264881 G A LYZL6 Missense_Mutation p.S60L 0.67 deleterious(0) possibly_damaging(0.493) TCGA-GN-A266-06 17 34499226 34499226 C T TBC1D3B Missense_Mutation p.R162Q 0.21 deleterious(0.02) benign(0.305) TCGA-GN-A266-06 17 3494609 3494609 T C SHPK Missense_Mutation p.K108R 0.29 tolerated(0.47) benign(0.005) TCGA-GN-A266-06 17 36453050 36453050 G A MRPL45 5'UTR 0.92 TCGA-GN-A266-06 17 36482961 36482961 C T GPR179 Missense_Mutation p.G2164E 0.65 tolerated(0.39) benign(0.016) TCGA-GN-A266-06 17 36499484 36499484 G A GPR179 Silent p.L63L 0.42 TCGA-GN-A266-06 17 36977268 36977268 G A CWC25 Missense_Mutation p.A26V 0.59 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 17 38645208 38645208 G A TNS4 Silent p.I151I 0.68 TCGA-GN-A266-06 17 38652542 38652542 C T TNS4 Missense_Mutation p.E46K 0.76 deleterious(0.01) possibly_damaging(0.772) TCGA-GN-A266-06 17 38859631 38859631 G A KRT24 Silent p.F105F 0.21 TCGA-GN-A266-06 17 38928356 38928356 G A KRT26 Nonsense_Mutation p.R4* 0.72 TCGA-GN-A266-06 17 38950178 38950178 C T KRT28 Missense_Mutation p.E367K 0.59 deleterious(0.02) possibly_damaging(0.867) TCGA-GN-A266-06 17 38950184 38950184 C T KRT28 Missense_Mutation p.E365K 0.16 deleterious(0.01) benign(0.44) TCGA-GN-A266-06 17 39382951 39382951 G A KRTAP9-2 Silent p.R15R 0.21 TCGA-GN-A266-06 17 39595036 39595036 C T KRT38 Silent p.L269L 0.61 TCGA-GN-A266-06 17 39619137 39619137 G A KRT32 Missense_Mutation p.R388W 0.54 tolerated(0.05) benign(0.246) TCGA-GN-A266-06 17 39684413 39684413 G A KRT19 Silent p.V29V 0.80 TCGA-GN-A266-06 17 39727770 39727770 C T KRT9 Missense_Mutation p.E159K 0.67 deleterious(0) possibly_damaging(0.459) TCGA-GN-A266-06 17 3974195 3974195 G T ZZEF1 Silent p.P1286P 0.20 TCGA-GN-A266-06 17 3977637 3977637 G A ZZEF1 Silent p.T1164T 0.52 TCGA-GN-A266-06 17 39919277 39919277 G A JUP Silent p.I485I 0.37 TCGA-GN-A266-06 17 39994175 39994175 C T KLHL10 5'UTR 0.62 TCGA-GN-A266-06 17 39994176 39994176 C T KLHL10 5'UTR 0.62 TCGA-GN-A266-06 17 40384045 40384045 A G STAT5B Missense_Mutation p.L34S 0.62 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 17 40630587 40630587 C T ATP6V0A1 Missense_Mutation p.P212S 0.41 tolerated(0.14) benign(0.364) TCGA-GN-A266-06 17 41008478 41008478 G A AOC3 Missense_Mutation p.E735K 0.35 tolerated(0.28) possibly_damaging(0.678) TCGA-GN-A266-06 17 42882180 42882180 C T GJC1 Missense_Mutation p.E336K 0.71 tolerated(0.42) probably_damaging(0.956) TCGA-GN-A266-06 17 43311019 43311019 G A FMNL1 Missense_Mutation p.V136M 0.60 deleterious(0) unknown(0) TCGA-GN-A266-06 17 43321365 43321365 C T FMNL1 Silent p.F807F 0.65 TCGA-GN-A266-06 17 43474338 43474338 G A ARHGAP27 Missense_Mutation p.S291L 0.66 tolerated(0.16) benign(0.052) TCGA-GN-A266-06 17 44060909 44060909 C T MAPT Nonsense_Mutation p.Q247* 0.64 TCGA-GN-A266-06 17 45376679 45376679 G A ITGB3 Missense_Mutation p.G566S 0.63 deleterious(0.01) probably_damaging(0.966) TCGA-GN-A266-06 17 45422425 45422425 G A EFCAB13 Missense_Mutation p.E160K 0.57 tolerated(0.06) possibly_damaging(0.51) TCGA-GN-A266-06 17 45473267 45473267 G A EFCAB13 Nonsense_Mutation p.W623* 0.35 TCGA-GN-A266-06 17 46052592 46052592 C T CDK5RAP3 Silent p.A134A 0.62 TCGA-GN-A266-06 17 46262129 46262129 C T SKAP1 Missense_Mutation p.E175K 0.68 tolerated(0.09) benign(0.028) TCGA-GN-A266-06 17 46688173 46688173 G A HOXB7 Silent p.S36S 0.24 TCGA-GN-A266-06 17 46804307 46804307 C T HOXB13 Missense_Mutation p.E234K 0.68 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 17 46804308 46804308 C T HOXB13 Silent p.R233R 0.69 TCGA-GN-A266-06 17 4726072 4726072 C T PLD2 Silent p.H905H 0.57 TCGA-GN-A266-06 17 48166677 48166677 C T ITGA3 3'UTR 0.69 TCGA-GN-A266-06 17 48594704 48594704 G A MYCBPAP Silent p.Q128Q 0.60 TCGA-GN-A266-06 17 48646258 48646258 C T CACNA1G Silent p.V90V 0.62 TCGA-GN-A266-06 17 48649321 48649321 C T CACNA1G Silent p.F223F 0.59 TCGA-GN-A266-06 17 48678466 48678466 C T CACNA1G Silent p.V1282V 0.72 TCGA-GN-A266-06 17 48697080 48697080 C T CACNA1G Nonsense_Mutation p.Q1940* 0.60 TCGA-GN-A266-06 17 48735493 48735493 C T ABCC3 Silent p.A179A 0.60 TCGA-GN-A266-06 17 48916900 48916900 G A WFIKKN2 Missense_Mutation p.G84E 0.58 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 17 50008440 50008440 C T CA10 Silent p.G63G 0.64 TCGA-GN-A266-06 17 5042816 5042816 C T USP6 Silent p.L449L 0.54 TCGA-GN-A266-06 17 5087520 5087520 G A ZNF594 Missense_Mutation p.S11F 0.49 deleterious(0.01) unknown(0) TCGA-GN-A266-06 17 51901025 51901025 G A KIF2B Missense_Mutation p.E211K 0.47 deleterious(0.03) benign(0.035) TCGA-GN-A266-06 17 54671853 54671853 G A NOG Missense_Mutation p.G90E 0.46 tolerated(0.38) probably_damaging(0.989) TCGA-GN-A266-06 17 56271404 56271404 C T EPX Missense_Mutation p.P182L 0.81 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 17 56320356 56320356 C T LPO Missense_Mutation p.H6Y 0.61 tolerated(0.87) unknown(0) TCGA-GN-A266-06 17 57058257 57058257 G A PPM1E Silent p.G711G 0.73 TCGA-GN-A266-06 17 57134354 57134354 G A TRIM37 Nonsense_Mutation p.R361* 0.59 TCGA-GN-A266-06 17 59667799 59667799 G A NACA2 3'UTR 0.57 TCGA-GN-A266-06 17 60814506 60814506 T A MARCH10 Silent p.G241G 0.73 TCGA-GN-A266-06 17 60879061 60879061 G A MARCH10 Silent p.F12F 0.74 TCGA-GN-A266-06 17 61564035 61564035 G A ACE Missense_Mutation p.D726N 0.68 tolerated(0.55) benign(0.071) TCGA-GN-A266-06 17 61611507 61611507 C T KCNH6 Silent p.V312V 0.12 TCGA-GN-A266-06 17 61623248 61623248 G A KCNH6 Silent p.G990G 0.64 TCGA-GN-A266-06 17 61958450 61958450 G A GH2 Missense_Mutation p.S77F 0.38 tolerated(0.09) probably_damaging(0.996) TCGA-GN-A266-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.54 deleterious(0) possibly_damaging(0.817) TCGA-GN-A266-06 17 65040722 65040722 C T CACNG1 5'UTR 0.62 TCGA-GN-A266-06 17 65050168 65050168 G A CACNG1 Missense_Mutation p.E96K 0.68 tolerated(0.1) benign(0.251) TCGA-GN-A266-06 17 65907764 65907764 C T BPTF Missense_Mutation p.S1255L 0.68 benign(0.007) TCGA-GN-A266-06 17 66267746 66267746 G A SLC16A6 Silent p.F185F 0.36 TCGA-GN-A266-06 17 66928482 66928482 C T ABCA8 Silent p.R248R 0.43 TCGA-GN-A266-06 17 67102348 67102348 G A ABCA6 Silent p.F798F 0.68 TCGA-GN-A266-06 17 7126487 7126488 - A ACADVL Frame_Shift_Ins p.I396Nfs*22 0.34 TCGA-GN-A266-06 17 7186890 7186890 C T SLC2A4 Silent p.L83L 0.28 TCGA-GN-A266-06 17 7256688 7256688 G A KCTD11 Missense_Mutation p.V143M 0.54 tolerated(0.22) benign(0.144) TCGA-GN-A266-06 17 72858944 72858944 G A FDXR Missense_Mutation p.H534Y 0.14 deleterious_low_confidence(0.03) benign(0.02) TCGA-GN-A266-06 17 72954523 72954523 C T HID1 Missense_Mutation p.G431R 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 17 7324787 7324787 C T SPEM1 Missense_Mutation p.R265W 0.35 tolerated(0.1) probably_damaging(0.988) TCGA-GN-A266-06 17 73843574 73843574 G A WBP2 Missense_Mutation p.P217S 0.82 tolerated(0.16) benign(0.002) TCGA-GN-A266-06 17 74136158 74136158 G A FOXJ1 Missense_Mutation p.P107S 0.29 tolerated(0.41) benign(0.014) TCGA-GN-A266-06 17 74287112 74287112 G A QRICH2 Silent p.F1066F 0.74 TCGA-GN-A266-06 17 7577070 7577070 G A TP53 Missense_Mutation p.R290C 0.49 deleterious(0.01) possibly_damaging(0.861) TCGA-GN-A266-06 17 7578453 7578453 G A TP53 Silent p.A159A 0.44 TCGA-GN-A266-06 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.45 deleterious(0) possibly_damaging(0.9) TCGA-GN-A266-06 17 76094571 76094571 C T TNRC6C Missense_Mutation p.S1521F 0.55 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 17 76166954 76166954 C G SYNGR2 Missense_Mutation p.H52Q 0.61 tolerated(0.65) benign(0.111) TCGA-GN-A266-06 17 76201792 76201792 C T AFMID Silent p.F251F 0.62 TCGA-GN-A266-06 17 76219625 76219625 C T BIRC5 Missense_Mutation p.A163V 0.64 deleterious(0.01) possibly_damaging(0.713) TCGA-GN-A266-06 17 76482381 76482381 G A DNAH17 Silent p.S2328S 0.67 TCGA-GN-A266-06 17 76525736 76525736 C T DNAH17 Missense_Mutation p.G1109S 0.63 benign(0.115) TCGA-GN-A266-06 17 76525737 76525737 C T DNAH17 Missense_Mutation p.M1108I 0.63 benign(0) TCGA-GN-A266-06 17 7695363 7695363 G A DNAH2 Silent p.E2343E 0.41 TCGA-GN-A266-06 17 76993403 76993403 G A CANT1 Missense_Mutation p.A101V 0.68 tolerated(0.24) benign(0.002) TCGA-GN-A266-06 17 77082446 77082446 C T ENGASE 3'UTR 0.61 TCGA-GN-A266-06 17 78519308 78519308 C T RPTOR 5'UTR 0.83 TCGA-GN-A266-06 17 79580495 79580495 G A NPLOC4 Missense_Mutation p.P79S 0.57 tolerated(0.06) probably_damaging(0.975) TCGA-GN-A266-06 17 79612079 79612079 C T TSPAN10 Missense_Mutation p.P33L 0.26 tolerated(0.14) possibly_damaging(0.851) TCGA-GN-A266-06 17 7979644 7979644 C T ALOX12B Missense_Mutation p.E461K 0.38 tolerated(0.55) benign(0.009) TCGA-GN-A266-06 17 7980338 7980338 C T ALOX12B Silent p.R415R 0.44 TCGA-GN-A266-06 17 8192410 8192410 C T SLC25A35 3'UTR 0.56 TCGA-GN-A266-06 17 8644972 8644972 C T CCDC42 Silent p.R104R 0.65 TCGA-GN-A266-06 17 9586206 9586206 C T USP43 Missense_Mutation p.S391F 0.65 deleterious(0.05) possibly_damaging(0.793) TCGA-GN-A266-06 18 12012207 12012207 G A IMPA2 Missense_Mutation p.R125Q 0.18 deleterious(0.01) benign(0.001) TCGA-GN-A266-06 18 12254876 12254876 G A CIDEA Intron 0.33 TCGA-GN-A266-06 18 12674539 12674539 G A CEP76 Missense_Mutation p.L613F 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A266-06 18 13884916 13884916 C T MC2R Missense_Mutation p.R201Q 0.44 deleterious(0.05) possibly_damaging(0.603) TCGA-GN-A266-06 18 19997229 19997229 C T CTAGE1 Nonsense_Mutation p.W182* 0.37 TCGA-GN-A266-06 18 19997481 19997481 C T CTAGE1 Silent p.E98E 0.17 TCGA-GN-A266-06 18 21483903 21483903 G A LAMA3 Missense_Mutation p.E2109K 0.13 benign(0.102) TCGA-GN-A266-06 18 21508698 21508698 C A LAMA3 Missense_Mutation p.P2802H 0.20 probably_damaging(0.964) TCGA-GN-A266-06 18 21694560 21694560 G A TTC39C Missense_Mutation p.E343K 0.21 deleterious(0) possibly_damaging(0.904) TCGA-GN-A266-06 18 21698134 21698134 C T TTC39C Missense_Mutation p.S375F 0.10 deleterious(0.01) possibly_damaging(0.652) TCGA-GN-A266-06 18 21736152 21736152 G A CABYR Intron 0.37 TCGA-GN-A266-06 18 21736228 21736228 G A CABYR Intron 0.32 TCGA-GN-A266-06 18 21752418 21752418 G A OSBPL1A Missense_Mutation p.P708L 0.33 tolerated(0.1) probably_damaging(0.954) TCGA-GN-A266-06 18 24496504 24496504 C T CHST9 Missense_Mutation p.E351K 0.23 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 18 25616441 25616441 G A CDH2 Intron 0.28 TCGA-GN-A266-06 18 28598740 28598740 C T DSC3 Missense_Mutation p.M323I 0.29 tolerated(0.91) benign(0.009) TCGA-GN-A266-06 18 28710797 28710797 G A DSC1 Intron 0.16 TCGA-GN-A266-06 18 28737393 28737393 C T DSC1 Missense_Mutation p.D98N 0.34 tolerated(0.49) benign(0.2) TCGA-GN-A266-06 18 2891813 2891813 G A EMILIN2 Missense_Mutation p.G563E 0.18 tolerated(0.1) benign(0.01) TCGA-GN-A266-06 18 2891879 2891879 C T EMILIN2 Missense_Mutation p.S585F 0.19 deleterious(0.04) benign(0.29) TCGA-GN-A266-06 18 28934722 28934722 G A DSG1 Missense_Mutation p.D855N 0.33 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 18 28968350 28968350 G A DSG4 Silent p.S79S 0.31 TCGA-GN-A266-06 18 28986274 28986274 C T DSG4 Missense_Mutation p.S624L 0.18 deleterious(0.04) possibly_damaging(0.662) TCGA-GN-A266-06 18 28989757 28989757 G A DSG4 Intron 0.38 TCGA-GN-A266-06 18 28989758 28989758 G A DSG4 Intron 0.39 TCGA-GN-A266-06 18 28991347 28991347 G A DSG4 Missense_Mutation p.G783E 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 18 28993139 28993139 C T DSG4 Missense_Mutation p.H921Y 0.32 tolerated(0.07) benign(0.12) TCGA-GN-A266-06 18 29049214 29049214 C T DSG3 Missense_Mutation p.P600L 0.37 tolerated(0.07) benign(0.231) TCGA-GN-A266-06 18 29049230 29049230 G A DSG3 Silent p.G605G 0.36 TCGA-GN-A266-06 18 29052370 29052370 C T DSG3 Missense_Mutation p.A674V 0.28 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 18 29054237 29054237 C T DSG3 Missense_Mutation p.A752V 0.44 tolerated(0.19) benign(0.002) TCGA-GN-A266-06 18 29868073 29868073 G A GAREM Missense_Mutation p.L163F 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 18 30092380 30092380 C T WBP11P1 RNA 0.20 TCGA-GN-A266-06 18 30092386 30092386 T A WBP11P1 RNA 0.37 TCGA-GN-A266-06 18 30321904 30321904 C T KLHL14 Nonsense_Mutation p.W352* 0.35 TCGA-GN-A266-06 18 30928858 30928858 C T CCDC178 Silent p.K151K 0.35 TCGA-GN-A266-06 18 30950112 30950112 G A CCDC178 Missense_Mutation p.H84Y 0.47 deleterious(0.01) possibly_damaging(0.804) TCGA-GN-A266-06 18 31326339 31326339 G A ASXL3 Missense_Mutation p.G2176E 0.28 probably_damaging(0.999) TCGA-GN-A266-06 18 31537330 31537330 A C NOL4 Missense_Mutation p.L463R 0.22 deleterious(0) benign(0.317) TCGA-GN-A266-06 18 31537457 31537457 C T NOL4 Missense_Mutation p.E421K 0.41 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 18 3188987 3188987 C T MYOM1 Missense_Mutation p.G177E 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-GN-A266-06 18 32455268 32455268 C T DTNA Silent p.P516P 0.31 TCGA-GN-A266-06 18 34376949 34376949 G A TPGS2 Missense_Mutation p.S241F 0.17 tolerated(0.37) benign(0.266) TCGA-GN-A266-06 18 3879862 3879862 G A DLGAP1 Silent p.T69T 0.17 TCGA-GN-A266-06 18 40323454 40323454 G A RIT2 3'UTR 0.40 TCGA-GN-A266-06 18 40323459 40323459 C T RIT2 Silent p.%3D 0.42 TCGA-GN-A266-06 18 40695475 40695475 C T RIT2 Missense_Mutation p.E4K 0.20 tolerated_low_confidence(0.22) benign(0.099) TCGA-GN-A266-06 18 40850576 40850576 C T SYT4 Silent p.K336K 0.21 TCGA-GN-A266-06 18 40853803 40853803 C T SYT4 Silent p.T197T 0.11 TCGA-GN-A266-06 18 42281671 42281671 G A SETBP1 Silent p.L120L 0.26 TCGA-GN-A266-06 18 43204774 43204774 G A SLC14A2 Missense_Mutation p.E49K 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.468) TCGA-GN-A266-06 18 43247946 43247946 C T SLC14A2 Silent p.T622T 0.35 TCGA-GN-A266-06 18 43329950 43329950 C T SLC14A1 3'UTR 0.26 TCGA-GN-A266-06 18 43591177 43591177 G A PSTPIP2 Silent p.F108F 0.34 TCGA-GN-A266-06 18 44030681 44030681 C T RNF165 Silent p.L245L 0.25 TCGA-GN-A266-06 18 44268761 44268761 C G ST8SIA5 Missense_Mutation p.E145Q 0.34 possibly_damaging(0.868) TCGA-GN-A266-06 18 44559744 44559744 C T TCEB3B Missense_Mutation p.G631E 0.26 tolerated(0.25) benign(0.002) TCGA-GN-A266-06 18 44561247 44561247 C T TCEB3B Missense_Mutation p.R130Q 0.12 tolerated(1) benign(0.118) TCGA-GN-A266-06 18 44561506 44561506 G A TCEB3B Silent p.L44L 0.21 TCGA-GN-A266-06 18 47110052 47110052 G A LIPG Silent p.K428K 0.19 TCGA-GN-A266-06 18 47323960 47323960 G A ACAA2 Missense_Mutation p.S63F 0.32 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 18 47421509 47421509 G A MYO5B Silent p.S949S 0.26 TCGA-GN-A266-06 18 47421510 47421510 G T MYO5B Missense_Mutation p.S949Y 0.26 tolerated(0.12) benign(0.281) TCGA-GN-A266-06 18 47432877 47432877 G A MYO5B Missense_Mutation p.R776W 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 18 47488650 47488650 C T MYO5B Missense_Mutation p.D511N 0.43 tolerated(0.06) probably_damaging(0.99) TCGA-GN-A266-06 18 47563306 47563306 G A MYO5B Silent p.V123V 0.34 TCGA-GN-A266-06 18 48255619 48255619 G A MAPK4 Missense_Mutation p.A387T 0.21 tolerated_low_confidence(0.59) benign(0.001) TCGA-GN-A266-06 18 48327874 48327874 C T MRO Missense_Mutation p.E158K 0.18 deleterious(0.04) probably_damaging(0.967) TCGA-GN-A266-06 18 50278677 50278677 C T DCC Silent p.Y115Y 0.30 TCGA-GN-A266-06 18 50592432 50592432 G A DCC Missense_Mutation p.R386Q 0.25 tolerated(1) benign(0.033) TCGA-GN-A266-06 18 50592482 50592482 G A DCC Missense_Mutation p.E403K 0.27 deleterious(0.01) possibly_damaging(0.876) TCGA-GN-A266-06 18 51053082 51053082 C T DCC Missense_Mutation p.P1403S 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A266-06 18 51904574 51904574 C T C18orf54 Silent p.D359D 0.32 TCGA-GN-A266-06 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.16 tolerated(0.12) probably_damaging(0.998) TCGA-GN-A266-06 18 56056398 56056398 C T NEDD4L Missense_Mutation p.H877Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 18 56204564 56204564 G A ALPK2 Missense_Mutation p.P952L 0.34 deleterious(0.03) benign(0.021) TCGA-GN-A266-06 18 57107039 57107039 C T CCBE1 Missense_Mutation p.G262E 0.23 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 18 59483292 59483292 G A RNF152 Silent p.I135I 0.35 TCGA-GN-A266-06 18 60017110 60017110 G A TNFRSF11A Missense_Mutation p.E75K 0.23 deleterious(0) probably_damaging(0.957) TCGA-GN-A266-06 18 61228387 61228387 G A SERPINB12 Missense_Mutation p.E152K 0.29 deleterious(0) probably_damaging(0.989) TCGA-GN-A266-06 18 61232681 61232681 G A SERPINB12 Missense_Mutation p.E217K 0.21 tolerated(0.4) probably_damaging(0.981) TCGA-GN-A266-06 18 61324206 61324206 G A SERPINB3 Silent p.S209S 0.28 TCGA-GN-A266-06 18 6138236 6138236 C T L3MBTL4 Missense_Mutation p.G386R 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 18 61468132 61468132 G A SERPINB7 Silent p.Q210Q 0.33 TCGA-GN-A266-06 18 61471964 61471964 C T SERPINB7 3'UTR 0.56 TCGA-GN-A266-06 18 61569035 61569035 G A SERPINB2 Silent p.V199V 0.29 TCGA-GN-A266-06 18 63492003 63492003 G A CDH7 Missense_Mutation p.G306D 0.31 deleterious(0.03) possibly_damaging(0.893) TCGA-GN-A266-06 18 66504003 66504003 G A CCDC102B Translation_Start_Site p.M1? 0.25 deleterious(0.03) possibly_damaging(0.805) TCGA-GN-A266-06 18 6908965 6908965 T C ARHGAP28 Silent p.G520G 0.19 TCGA-GN-A266-06 18 6965358 6965358 G A LAMA1 Missense_Mutation p.T2375I 0.22 tolerated(0.06) benign(0.023) TCGA-GN-A266-06 18 6997746 6997746 G A LAMA1 Missense_Mutation p.L1601F 0.16 tolerated(0.07) benign(0.12) TCGA-GN-A266-06 18 70205891 70205891 G A CBLN2 Silent p.I158I 0.20 TCGA-GN-A266-06 18 70416252 70416252 G A NETO1 3'UTR 0.50 TCGA-GN-A266-06 18 7044747 7044747 G A LAMA1 Missense_Mutation p.T317I 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 18 71815885 71815885 C T TIMM21 5'UTR 0.45 TCGA-GN-A266-06 18 73130767 73130767 C T SMIM21 Nonsense_Mutation p.W78* 0.48 TCGA-GN-A266-06 18 74091392 74091392 C T ZNF516 Missense_Mutation p.G893D 0.41 tolerated(0.22) benign(0.028) TCGA-GN-A266-06 18 77170528 77170528 C T NFATC1 Missense_Mutation p.H72Y 0.38 tolerated(0.09) possibly_damaging(0.616) TCGA-GN-A266-06 18 77246677 77246677 C T NFATC1 Missense_Mutation p.S828L 0.25 tolerated(0.83) benign(0.014) TCGA-GN-A266-06 18 7955116 7955116 C T PTPRM Intron 0.30 TCGA-GN-A266-06 18 8798221 8798221 T C SOGA2 Missense_Mutation p.S790P 0.33 tolerated(0.39) benign(0.005) TCGA-GN-A266-06 19 10158123 10158123 C T C3P1 RNA 0.21 TCGA-GN-A266-06 19 10226423 10226423 G A EIF3G Silent p.F259F 0.23 TCGA-GN-A266-06 19 10335231 10335231 C T S1PR2 Silent p.S117S 0.15 TCGA-GN-A266-06 19 10461426 10461426 G T TYK2 3'UTR 0.33 TCGA-GN-A266-06 19 10502151 10502151 G A CDC37 3'UTR 0.37 TCGA-GN-A266-06 19 1062201 1062201 C T ABCA7 Silent p.L1867L 0.12 TCGA-GN-A266-06 19 1127757 1127757 G A SBNO2 Missense_Mutation p.S96F 0.17 deleterious_low_confidence(0) benign(0.219) TCGA-GN-A266-06 19 11303680 11303680 G A KANK2 Missense_Mutation p.P359L 0.36 deleterious(0.02) possibly_damaging(0.798) TCGA-GN-A266-06 19 11408880 11408880 G A TSPAN16 Silent p.T44T 0.36 TCGA-GN-A266-06 19 11508178 11508178 G A RGL3 Silent p.A620A 0.31 TCGA-GN-A266-06 19 11660273 11660273 G A CNN1 Missense_Mutation p.G213R 0.33 tolerated(0.06) probably_damaging(0.996) TCGA-GN-A266-06 19 11762578 11762578 C T ZNF833P RNA 0.14 TCGA-GN-A266-06 19 11888539 11888539 C T ZNF441 Silent p.N39N 0.23 TCGA-GN-A266-06 19 11978815 11978815 C T ZNF439 Missense_Mutation p.R311C 0.40 deleterious(0.03) benign(0.001) TCGA-GN-A266-06 19 12638052 12638052 G A ZNF564 Silent p.F290F 0.26 TCGA-GN-A266-06 19 12822379 12822379 G A TNPO2 Silent p.I313I 0.31 TCGA-GN-A266-06 19 12995588 12995588 C T KLF1 3'UTR 0.36 TCGA-GN-A266-06 19 13184830 13184830 C T NFIX Missense_Mutation p.P270S 0.39 tolerated(0.32) benign(0.182) TCGA-GN-A266-06 19 13192533 13192533 C T NFIX Missense_Mutation p.S373F 0.47 deleterious(0) possibly_damaging(0.888) TCGA-GN-A266-06 19 13409891 13409891 C T CACNA1A Silent p.Q852Q 0.35 TCGA-GN-A266-06 19 14071304 14071304 G A DCAF15 Silent p.K553K 0.35 TCGA-GN-A266-06 19 14079479 14079479 G A RFX1 Nonsense_Mutation p.Q544* 0.42 TCGA-GN-A266-06 19 1434803 1434803 C A DAZAP1 Silent p.S372S 0.25 TCGA-GN-A266-06 19 1453051 1453051 C T APC2 Silent p.A17A 0.39 TCGA-GN-A266-06 19 14581591 14581591 G A PKN1 Silent p.R857R 0.31 TCGA-GN-A266-06 19 14740983 14740983 G A EMR3 Silent p.I560I 0.34 TCGA-GN-A266-06 19 15083549 15083549 G A SLC1A6 Silent p.F58F 0.26 TCGA-GN-A266-06 19 15132205 15132205 C T CCDC105 Silent p.V305V 0.26 TCGA-GN-A266-06 19 15166036 15166036 A C CASP14 Missense_Mutation p.Q157H 0.21 tolerated(0.11) benign(0.015) TCGA-GN-A266-06 19 15276216 15276216 G A NOTCH3 Silent p.I1926I 0.19 TCGA-GN-A266-06 19 15289871 15289871 C T NOTCH3 Missense_Mutation p.G1228E 0.26 deleterious(0.01) possibly_damaging(0.704) TCGA-GN-A266-06 19 15350023 15350023 G A BRD4 Missense_Mutation p.P1210L 0.23 possibly_damaging(0.726) TCGA-GN-A266-06 19 15512189 15512189 G A AKAP8L Silent p.G196G 0.35 TCGA-GN-A266-06 19 15535061 15535061 G A WIZ Silent p.L720L 0.35 TCGA-GN-A266-06 19 15535062 15535062 G A WIZ Silent p.S719S 0.38 TCGA-GN-A266-06 19 15536289 15536289 G A WIZ Missense_Mutation p.P458S 0.38 tolerated(0.13) probably_damaging(0.997) TCGA-GN-A266-06 19 15580404 15580404 G A PGLYRP2 Intron 0.33 TCGA-GN-A266-06 19 15587195 15587195 C T PGLYRP2 Missense_Mutation p.E96K 0.32 tolerated(0.34) benign(0.013) TCGA-GN-A266-06 19 15648746 15648746 C T CYP4F22 Missense_Mutation p.L205F 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 15654785 15654785 G A CYP4F22 Missense_Mutation p.E315K 0.33 deleterious(0.03) possibly_damaging(0.544) TCGA-GN-A266-06 19 15760877 15760877 G A CYP4F3 Missense_Mutation p.D268N 0.24 deleterious(0.04) benign(0.078) TCGA-GN-A266-06 19 15770121 15770121 G A CYP4F3 Missense_Mutation p.E497K 0.32 tolerated(0.4) benign(0.013) TCGA-GN-A266-06 19 15793264 15793264 C T CYP4F12 Silent p.L197L 0.33 TCGA-GN-A266-06 19 15807820 15807820 G A CYP4F12 Silent p.R500R 0.34 TCGA-GN-A266-06 19 15852975 15852975 C T OR10H3 Missense_Mutation p.S258F 0.36 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 19 15905669 15905669 G T OR10H5 Nonsense_Mutation p.G271* 0.33 TCGA-GN-A266-06 19 16032971 16032971 C T CYP4F11 Missense_Mutation p.D331N 0.14 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 19 16791280 16791280 C T TMEM38A Silent p.F118F 0.31 TCGA-GN-A266-06 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.21 tolerated(0.09) benign(0.03) TCGA-GN-A266-06 19 17394161 17394161 C T ANKLE1 Silent p.P196P 0.31 TCGA-GN-A266-06 19 17653061 17653061 G A FAM129C Silent p.G460G 0.38 TCGA-GN-A266-06 19 17838325 17838325 C T MAP1S Missense_Mutation p.P711L 0.27 tolerated(0.11) benign(0.058) TCGA-GN-A266-06 19 17922514 17922514 C T B3GNT3 Silent p.F234F 0.34 TCGA-GN-A266-06 19 17922734 17922734 G A B3GNT3 Missense_Mutation p.G308R 0.35 deleterious(0.03) probably_damaging(0.991) TCGA-GN-A266-06 19 17945447 17945447 G A JAK3 Silent p.A761A 0.30 TCGA-GN-A266-06 19 1802530 1802530 C T ATP8B3 Missense_Mutation p.R340K 0.15 tolerated(1) benign(0.023) TCGA-GN-A266-06 19 18177429 18177429 G A IL12RB1 Missense_Mutation p.S469F 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 18255851 18255851 C T MAST3 Missense_Mutation p.P922S 0.41 tolerated(0.1) probably_damaging(0.998) TCGA-GN-A266-06 19 18329177 18329177 G A PDE4C Silent p.S399S 0.40 TCGA-GN-A266-06 19 18332997 18332997 C T PDE4C Missense_Mutation p.D127N 0.12 deleterious(0) benign(0.238) TCGA-GN-A266-06 19 18453694 18453694 C T PGPEP1 Silent p.T20T 0.37 TCGA-GN-A266-06 19 18672911 18672911 C T KXD1 Silent p.I15I 0.38 TCGA-GN-A266-06 19 18724759 18724759 C T TMEM59L Silent p.L83L 0.34 TCGA-GN-A266-06 19 19327836 19327836 G A NCAN Splice_Site p.X25_splice 0.30 TCGA-GN-A266-06 19 19351455 19351455 C T NCAN Silent p.I1151I 0.26 TCGA-GN-A266-06 19 19420913 19420913 G A SUGP1 Silent p.T101T 0.31 TCGA-GN-A266-06 19 19655245 19655245 G A CILP2 Missense_Mutation p.D631N 0.37 tolerated(0.08) benign(0.004) TCGA-GN-A266-06 19 19655535 19655535 C T CILP2 Silent p.F727F 0.25 TCGA-GN-A266-06 19 19656520 19656520 G A CILP2 Missense_Mutation p.G1056S 0.15 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 19734920 19734920 G A LPAR2 3'UTR 0.46 TCGA-GN-A266-06 19 20215171 20215171 C T ZNF90 Missense_Mutation p.L43F 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 21992307 21992307 C T ZNF43 Missense_Mutation p.E178K 0.40 tolerated(0.32) possibly_damaging(0.679) TCGA-GN-A266-06 19 22154154 22154154 C T ZNF208 Missense_Mutation p.E1228K 0.17 tolerated(0.78) benign(0.13) TCGA-GN-A266-06 19 22157127 22157127 C T ZNF208 Missense_Mutation p.A237T 0.36 tolerated(0.15) benign(0.415) TCGA-GN-A266-06 19 22157521 22157521 T A ZNF208 Missense_Mutation p.K105N 0.46 tolerated(0.28) benign(0.117) TCGA-GN-A266-06 19 22574613 22574613 G A ZNF98 Missense_Mutation p.S475L 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-GN-A266-06 19 22586269 22586269 C T ZNF98 Missense_Mutation p.E26K 0.23 deleterious(0) probably_damaging(0.989) TCGA-GN-A266-06 19 22586296 22586296 C T ZNF98 Missense_Mutation p.D17N 0.25 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 19 22939105 22939105 C T ZNF99 3'Flank 0.44 TCGA-GN-A266-06 19 22940013 22940013 G A ZNF99 3'Flank 0.29 TCGA-GN-A266-06 19 22940045 22940045 C T ZNF99 3'Flank 0.39 TCGA-GN-A266-06 19 22940532 22940532 G A ZNF99 Missense_Mutation p.H727Y 0.26 tolerated(0.05) probably_damaging(0.994) TCGA-GN-A266-06 19 22951144 22951144 C T ZNF99 Nonsense_Mutation p.W63* 0.33 TCGA-GN-A266-06 19 23405549 23405549 G A ZNF724P Missense_Mutation p.H500Y 0.36 deleterious(0.01) probably_damaging(0.923) TCGA-GN-A266-06 19 23941588 23941588 G A ZNF681 5'UTR 0.38 TCGA-GN-A266-06 19 2717669 2717669 G A DIRAS1 Nonsense_Mutation p.Q46* 0.40 TCGA-GN-A266-06 19 2878416 2878416 C T ZNF556 3'UTR 0.33 TCGA-GN-A266-06 19 3009669 3009669 G A TLE2 Silent p.P348P 0.21 TCGA-GN-A266-06 19 30104821 30104821 C T POP4 Silent p.I156I 0.24 TCGA-GN-A266-06 19 307485 307485 G A MIER2 Missense_Mutation p.A417V 0.31 tolerated(0.2) benign(0.091) TCGA-GN-A266-06 19 30936569 30936569 C T ZNF536 Silent p.V700V 0.26 TCGA-GN-A266-06 19 31039022 31039022 C T ZNF536 Silent p.F832F 0.32 TCGA-GN-A266-06 19 31039066 31039066 G A ZNF536 Missense_Mutation p.G847E 0.29 deleterious(0) possibly_damaging(0.801) TCGA-GN-A266-06 19 3119228 3119228 C T GNA11 Silent p.L254L 0.10 TCGA-GN-A266-06 19 32873629 32873629 G T ZNF507 Silent p.L834L 0.29 TCGA-GN-A266-06 19 3293399 3293399 C T CELF5 Silent p.L471L 0.22 TCGA-GN-A266-06 19 33167782 33167782 G A RGS9BP Missense_Mutation p.G205S 0.17 tolerated(0.51) benign(0.002) TCGA-GN-A266-06 19 33353099 33353099 G T SLC7A9 Missense_Mutation p.S210Y 0.32 deleterious(0.03) possibly_damaging(0.905) TCGA-GN-A266-06 19 34180092 34180092 G A CHST8 5'UTR 0.26 TCGA-GN-A266-06 19 35231794 35231794 C T ZNF181 Missense_Mutation p.L170F 0.24 tolerated(0.23) benign(0.001) TCGA-GN-A266-06 19 35624645 35624645 G A LGI4 Missense_Mutation p.S89F 0.13 deleterious(0.01) benign(0.153) TCGA-GN-A266-06 19 3574473 3574473 C T HMG20B Silent p.F80F 0.38 TCGA-GN-A266-06 19 35850271 35850271 C T FFAR3 Missense_Mutation p.S160F 0.14 tolerated(0.17) benign(0.14) TCGA-GN-A266-06 19 35862963 35862963 C T GPR42 Silent p.F234F 0.46 TCGA-GN-A266-06 19 3600331 3600331 C T TBXA2R Missense_Mutation p.G101D 0.09 tolerated(0.43) benign(0.116) TCGA-GN-A266-06 19 36050758 36050758 G A ATP4A Silent p.F335F 0.18 TCGA-GN-A266-06 19 36113953 36113953 C T HAUS5 3'UTR 0.18 TCGA-GN-A266-06 19 36205935 36205935 G A ZBTB32 Missense_Mutation p.R136K 0.17 tolerated_low_confidence(0.28) benign(0.003) TCGA-GN-A266-06 19 36214784 36214784 C T KMT2B Silent p.L1070L 0.20 TCGA-GN-A266-06 19 36224547 36224547 C T KMT2B Silent p.L2337L 0.33 TCGA-GN-A266-06 19 36278537 36278537 C T ARHGAP33 Missense_Mutation p.P863S 0.34 tolerated_low_confidence(0.18) benign(0.198) TCGA-GN-A266-06 19 36290945 36290945 G A PRODH2 Missense_Mutation p.H536Y 0.23 tolerated_low_confidence(0.14) benign(0.003) TCGA-GN-A266-06 19 36290948 36290948 G A PRODH2 Missense_Mutation p.P535S 0.30 tolerated_low_confidence(0.15) benign(0.006) TCGA-GN-A266-06 19 36357193 36357193 C T KIRREL2 Silent p.F642F 0.27 TCGA-GN-A266-06 19 36370389 36370389 C T APLP1 3'UTR 0.26 TCGA-GN-A266-06 19 36388565 36388565 G A NFKBID 5'UTR 0.27 TCGA-GN-A266-06 19 36832048 36832048 G A ZFP14 Missense_Mutation p.P227L 0.24 tolerated(0.2) probably_damaging(0.999) TCGA-GN-A266-06 19 36940123 36940123 G A ZNF566 Missense_Mutation p.P339L 0.27 tolerated(0.05) probably_damaging(1) TCGA-GN-A266-06 19 3728436 3728436 G A TJP3 Silent p.E11E 0.19 TCGA-GN-A266-06 19 375875 375875 G A THEG Silent p.L32L 0.27 TCGA-GN-A266-06 19 375932 375932 G A THEG Silent p.P13P 0.12 TCGA-GN-A266-06 19 37643740 37643740 G A ZNF585A Missense_Mutation p.S299F 0.38 tolerated(0.22) benign(0.021) TCGA-GN-A266-06 19 37676099 37676099 C A ZNF585B 3'UTR 0.16 TCGA-GN-A266-06 19 37676100 37676100 C T ZNF585B 3'UTR 0.16 TCGA-GN-A266-06 19 37904098 37904098 G A ZNF569 Missense_Mutation p.H488Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 19 38743536 38743536 G A PPP1R14A Nonsense_Mutation p.Q94* 0.29 TCGA-GN-A266-06 19 38881044 38881044 C T SPRED3 Silent p.V34V 0.40 TCGA-GN-A266-06 19 38951140 38951140 G A RYR1 Missense_Mutation p.R829Q 0.44 possibly_damaging(0.615) TCGA-GN-A266-06 19 38964079 38964079 G A RYR1 Nonsense_Mutation p.W1276* 0.36 TCGA-GN-A266-06 19 38991630 38991630 G A RYR1 Silent p.T2538T 0.23 TCGA-GN-A266-06 19 39018290 39018290 G A RYR1 Missense_Mutation p.E3564K 0.30 benign(0.003) TCGA-GN-A266-06 19 39421904 39421904 C T MRPS12 5'UTR 0.25 TCGA-GN-A266-06 19 39517545 39517545 G A FBXO27 Missense_Mutation p.P225S 0.38 deleterious(0.04) benign(0.356) TCGA-GN-A266-06 19 39591400 39591400 C A PAPL Missense_Mutation p.H238Q 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 39669193 39669193 C T PAK4 Missense_Mutation p.L584F 0.23 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 19 39805083 39805083 G A LRFN1 Silent p.P298P 0.58 TCGA-GN-A266-06 19 39866354 39866354 C T SAMD4B Silent p.P244P 0.29 TCGA-GN-A266-06 19 39866355 39866355 C T SAMD4B Nonsense_Mutation p.Q245* 0.30 TCGA-GN-A266-06 19 40097951 40097951 C T LGALS13 Missense_Mutation p.S131F 0.27 tolerated(0.28) benign(0.24) TCGA-GN-A266-06 19 40368658 40368658 G A FCGBP Silent p.F4230F 0.13 TCGA-GN-A266-06 19 40384098 40384098 G A FCGBP Missense_Mutation p.P3171L 0.12 possibly_damaging(0.908) TCGA-GN-A266-06 19 40396021 40396021 G A FCGBP Missense_Mutation p.P2459L 0.08 benign(0.001) TCGA-GN-A266-06 19 40411743 40411743 C T FCGBP Silent p.Q1295Q 0.31 TCGA-GN-A266-06 19 40581067 40581067 G A ZNF780A Missense_Mutation p.R429C 0.29 tolerated(0.22) benign(0.087) TCGA-GN-A266-06 19 40978566 40978566 G A SPTBN4 Missense_Mutation p.G13D 0.46 tolerated(0.48) benign(0) TCGA-GN-A266-06 19 41269505 41269505 C T SNRPA Missense_Mutation p.P205L 0.23 deleterious(0.03) possibly_damaging(0.908) TCGA-GN-A266-06 19 41447371 41447371 G A AC092071.1 5'Flank 0.40 TCGA-GN-A266-06 19 41447372 41447372 G A AC092071.1 5'Flank 0.30 TCGA-GN-A266-06 19 4157233 4157233 C T CREB3L3 Missense_Mutation p.S133F 0.26 tolerated(0.21) benign(0.054) TCGA-GN-A266-06 19 41627997 41627997 C T CYP2F1 Missense_Mutation p.P261S 0.11 deleterious(0.01) benign(0.127) TCGA-GN-A266-06 19 41704514 41704514 C T CYP2S1 Missense_Mutation p.S214F 0.34 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 41704515 41704515 C T CYP2S1 Silent p.S214S 0.35 TCGA-GN-A266-06 19 41743986 41743986 C T AXL Silent p.I307I 0.34 TCGA-GN-A266-06 19 41807588 41807588 C T HNRNPUL1 Missense_Mutation p.H556Y 0.33 tolerated(0.07) unknown(0) TCGA-GN-A266-06 19 42083877 42083877 G A CEACAM21 Silent p.Q130Q 0.16 TCGA-GN-A266-06 19 4216717 4216717 A C ANKRD24 Missense_Mutation p.R520S 0.33 tolerated(0.58) benign(0.002) TCGA-GN-A266-06 19 42266060 42266060 C T CEACAM6 Missense_Mutation p.S296F 0.29 tolerated(0.51) benign(0.139) TCGA-GN-A266-06 19 42410944 42410944 C T ARHGEF1 3'UTR 0.53 TCGA-GN-A266-06 19 42479800 42479800 G A ATP1A3 Silent p.I761I 0.24 TCGA-GN-A266-06 19 42498179 42498179 C T ATP1A3 Intron 0.50 TCGA-GN-A266-06 19 42585510 42585510 C T ZNF574 3'UTR 0.29 TCGA-GN-A266-06 19 42798205 42798205 C T CIC Silent p.L1387L 0.35 TCGA-GN-A266-06 19 42798877 42798877 C T CIC Silent p.F1483F 0.34 TCGA-GN-A266-06 19 42838218 42838218 C T MEGF8 Silent p.F137F 0.28 TCGA-GN-A266-06 19 4290641 4290641 C T SHD 3'UTR 0.32 TCGA-GN-A266-06 19 42910379 42910379 G A LIPE Silent p.L767L 0.32 TCGA-GN-A266-06 19 43242934 43242934 G A PSG3 Silent p.I124I 0.14 TCGA-GN-A266-06 19 43358117 43358117 G A PSG10P RNA 0.19 TCGA-GN-A266-06 19 43371394 43371394 C T PSG1 3'UTR 0.33 TCGA-GN-A266-06 19 43406454 43406454 T C PSG6 3'Flank 0.46 TCGA-GN-A266-06 19 43411915 43411915 C T PSG6 Silent p.R266R 0.36 TCGA-GN-A266-06 19 43421897 43421897 C A PSG6 Missense_Mutation p.K16N 0.31 deleterious(0.03) benign(0.202) TCGA-GN-A266-06 19 43430759 43430759 C T PSG7 Nonsense_Mutation p.W273* 0.32 TCGA-GN-A266-06 19 43528851 43528851 G A PSG11 Missense_Mutation p.T141I 0.32 tolerated(0.39) benign(0.438) TCGA-GN-A266-06 19 43576076 43576076 G A PSG2 Missense_Mutation p.S247L 0.13 tolerated(0.08) probably_damaging(0.979) TCGA-GN-A266-06 19 43762487 43762487 C T PSG9 Silent p.G370G 0.33 TCGA-GN-A266-06 19 43773672 43773672 C T PSG9 5'UTR 0.27 TCGA-GN-A266-06 19 43866322 43866322 G A CD177 3'UTR 0.29 TCGA-GN-A266-06 19 43922595 43922595 G A TEX101 3'UTR 0.21 TCGA-GN-A266-06 19 44223287 44223287 G A IRGC Missense_Mutation p.E193K 0.26 tolerated(0.4) possibly_damaging(0.833) TCGA-GN-A266-06 19 44418226 44418226 G A ZNF45 Silent p.S454S 0.27 TCGA-GN-A266-06 19 44466927 44466927 C T ZNF221 Missense_Mutation p.P17S 0.09 tolerated(0.17) possibly_damaging(0.857) TCGA-GN-A266-06 19 44585252 44585252 C T ZNF284 Nonsense_Mutation p.R34* 0.35 TCGA-GN-A266-06 19 44792651 44792651 G A ZNF235 Missense_Mutation p.R313C 0.37 deleterious(0.03) benign(0.001) TCGA-GN-A266-06 19 44833723 44833723 G A ZNF112 Missense_Mutation p.S202F 0.33 tolerated(0.38) benign(0.004) TCGA-GN-A266-06 19 44936407 44936407 C T ZNF229 Silent p.R76R 0.28 TCGA-GN-A266-06 19 45028262 45028262 C T CEACAM20 RNA 0.32 TCGA-GN-A266-06 19 45153195 45153195 C T PVR Missense_Mutation p.S181L 0.18 tolerated(0.07) probably_damaging(0.985) TCGA-GN-A266-06 19 45315788 45315788 G A BCAM Missense_Mutation p.E163K 0.29 tolerated(0.06) possibly_damaging(0.617) TCGA-GN-A266-06 19 4538810 4538810 G A LRG1 Silent p.I62I 0.22 TCGA-GN-A266-06 19 45822867 45822867 G A CKM Silent p.T35T 0.34 TCGA-GN-A266-06 19 46021280 46021280 C T VASP Missense_Mutation p.L91F 0.24 deleterious(0) unknown(0) TCGA-GN-A266-06 19 46280937 46280937 G A DMPK Silent p.I300I 0.33 TCGA-GN-A266-06 19 46288921 46288921 G A AC011530.4 Silent p.F17F 0.46 TCGA-GN-A266-06 19 46289988 46289988 G A DMWD Silent p.L256L 0.30 TCGA-GN-A266-06 19 47569955 47569955 G A ZC3H4 Silent p.F1190F 0.33 TCGA-GN-A266-06 19 47969130 47969130 G A SLC8A2 Silent p.I177I 0.26 TCGA-GN-A266-06 19 4817408 4817408 C A TICAM1 Missense_Mutation p.V328F 0.09 deleterious(0.04) possibly_damaging(0.595) TCGA-GN-A266-06 19 48382323 48382323 G A SULT2A1 Silent p.F179F 0.31 TCGA-GN-A266-06 19 48511930 48511930 C T ELSPBP1 Silent p.T2T 0.28 TCGA-GN-A266-06 19 48523091 48523091 G A ELSPBP1 Silent p.E157E 0.33 TCGA-GN-A266-06 19 48551517 48551517 G A PLA2G4C 3'UTR 0.47 TCGA-GN-A266-06 19 48653380 48653380 G A LIG1 Missense_Mutation p.P221L 0.18 deleterious(0.02) benign(0.013) TCGA-GN-A266-06 19 48878949 48878949 C T SYNGR4 Silent p.L137L 0.32 TCGA-GN-A266-06 19 49001288 49001288 C T LMTK3 Missense_Mutation p.R1042K 0.31 unknown(0) TCGA-GN-A266-06 19 49398325 49398325 G A TULP2 Silent p.S148S 0.37 TCGA-GN-A266-06 19 49398326 49398326 G A TULP2 Missense_Mutation p.S148F 0.37 tolerated(0.06) benign(0.002) TCGA-GN-A266-06 19 49489290 49489290 G A GYS1 Silent p.F165F 0.12 TCGA-GN-A266-06 19 49557627 49557627 G A CGB7 Missense_Mutation p.S140F 0.18 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-GN-A266-06 19 49564561 49564561 C T NTF4 3'UTR 0.33 TCGA-GN-A266-06 19 49573376 49573376 C T KCNA7 Missense_Mutation p.E439K 0.42 tolerated_low_confidence(0.15) probably_damaging(0.952) TCGA-GN-A266-06 19 49878092 49878092 C T DKKL1 Missense_Mutation p.S179F 0.47 tolerated_low_confidence(0.11) benign(0.013) TCGA-GN-A266-06 19 49933984 49933984 C T SLC17A7 Missense_Mutation p.G492E 0.31 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 19 50158109 50158109 C G SCAF1 Silent p.G1200G 0.62 TCGA-GN-A266-06 19 50165513 50165514 CC G IRF3 Frame_Shift_Del p.G225Pfs*28 0.29 TCGA-GN-A266-06 19 50212046 50212046 G A CPT1C Missense_Mutation p.D506N 0.29 tolerated(1) possibly_damaging(0.805) TCGA-GN-A266-06 19 50412799 50412799 G A NUP62 Missense_Mutation p.S89F 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A266-06 19 50548690 50548690 C T ZNF473 Silent p.T330T 0.12 TCGA-GN-A266-06 19 50812329 50812329 C T MYH14 Missense_Mutation p.S1952F 0.33 deleterious(0) probably_damaging(0.935) TCGA-GN-A266-06 19 50826917 50826917 G A KCNC3 Silent p.F431F 0.33 TCGA-GN-A266-06 19 50838438 50838438 C T NAPSB Intron 0.24 TCGA-GN-A266-06 19 50954567 50954567 G A MYBPC2 Splice_Site p.X537_splice 0.35 TCGA-GN-A266-06 19 50957356 50957356 G T MYBPC2 Missense_Mutation p.R610L 0.38 deleterious(0.03) probably_damaging(0.943) TCGA-GN-A266-06 19 51020773 51020773 G A LRRC4B 3'UTR 0.28 TCGA-GN-A266-06 19 51133146 51133146 C T SYT3 Silent p.R319R 0.14 TCGA-GN-A266-06 19 51133407 51133407 G A SYT3 Silent p.P232P 0.37 TCGA-GN-A266-06 19 51359505 51359505 C T KLK3 Missense_Mutation p.P19L 0.11 deleterious(0.03) benign(0.38) TCGA-GN-A266-06 19 51411882 51411882 G A KLK4 Missense_Mutation p.T143I 0.22 tolerated(0.09) benign(0.016) TCGA-GN-A266-06 19 51446827 51446827 G A KLK5 3'UTR 0.36 TCGA-GN-A266-06 19 51452009 51452009 G A KLK5 Nonsense_Mutation p.Q205* 0.11 TCGA-GN-A266-06 19 51630295 51630295 G A SIGLEC9 Missense_Mutation p.V253I 0.33 tolerated(0.79) benign(0.01) TCGA-GN-A266-06 19 51630528 51630528 G A SIGLEC9 Silent p.Q330Q 0.16 TCGA-GN-A266-06 19 51647846 51647846 C T SIGLEC7 Missense_Mutation p.P206L 0.33 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 19 51649359 51649359 C T SIGLEC7 Silent p.S336S 0.13 TCGA-GN-A266-06 19 51656503 51656503 G A SIGLEC7 3'UTR 0.26 TCGA-GN-A266-06 19 51768691 51768691 G A SIGLECL1 Missense_Mutation p.G31E 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 51960453 51960453 G A SIGLEC8 Nonsense_Mutation p.Q256* 0.16 TCGA-GN-A266-06 19 51986462 51986462 G T CEACAM18 Nonsense_Mutation p.E350* 0.35 TCGA-GN-A266-06 19 52003378 52003378 G A SIGLEC12 Missense_Mutation p.P202S 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-GN-A266-06 19 52115667 52115667 C T SIGLEC5 Silent p.R491R 0.32 TCGA-GN-A266-06 19 5220313 5220313 G A PTPRS Silent p.F1169F 0.46 TCGA-GN-A266-06 19 52619558 52619558 G A ZNF616 Missense_Mutation p.H287Y 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 52660524 52660524 C T ZNF836 Missense_Mutation p.E138K 0.25 tolerated(0.76) probably_damaging(0.931) TCGA-GN-A266-06 19 52803732 52803732 C T ZNF480 Missense_Mutation p.P23S 0.29 tolerated(0.7) benign(0) TCGA-GN-A266-06 19 52919319 52919319 G A ZNF528 Missense_Mutation p.R405K 0.36 deleterious(0.01) benign(0.055) TCGA-GN-A266-06 19 52955137 52955137 C T ZNF578 5'Flank 0.35 TCGA-GN-A266-06 19 53085707 53085707 G A ZNF701 Missense_Mutation p.G198E 0.33 tolerated(0.16) probably_damaging(1) TCGA-GN-A266-06 19 53269225 53269225 G A ZNF600 Missense_Mutation p.S595L 0.34 deleterious(0.02) benign(0.056) TCGA-GN-A266-06 19 53269440 53269440 C T ZNF600 Silent p.E523E 0.09 TCGA-GN-A266-06 19 53304598 53304598 G A ZNF28 Missense_Mutation p.S167F 0.18 deleterious(0) possibly_damaging(0.896) TCGA-GN-A266-06 19 53418572 53418572 G A ZNF888 RNA 0.21 TCGA-GN-A266-06 19 53885594 53885594 T G ZNF525 3'UTR 0.21 TCGA-GN-A266-06 19 53886515 53886515 T G ZNF525 3'UTR 0.36 TCGA-GN-A266-06 19 54140241 54140241 G A DPRX Silent p.%3D 0.34 TCGA-GN-A266-06 19 54198488 54198488 G A MIR519B RNA 0.28 TCGA-GN-A266-06 19 54307219 54307219 G A NLRP12 Silent p.L858L 0.14 TCGA-GN-A266-06 19 54312891 54312891 C T NLRP12 Silent p.G674G 0.31 TCGA-GN-A266-06 19 54403501 54403501 C T PRKCG Silent p.F432F 0.38 TCGA-GN-A266-06 19 54545038 54545038 G A VSTM1 Missense_Mutation p.L196F 0.37 tolerated(0.26) benign(0.07) TCGA-GN-A266-06 19 54695980 54695980 C T TSEN34 Silent p.S167S 0.18 TCGA-GN-A266-06 19 54783313 54783313 G A LILRB2 Missense_Mutation p.S182F 0.36 deleterious(0.02) benign(0.241) TCGA-GN-A266-06 19 54967259 54967259 C T LENG8 Missense_Mutation p.S380F 0.35 deleterious(0.01) possibly_damaging(0.724) TCGA-GN-A266-06 19 55086930 55086930 C T LILRA2 Missense_Mutation p.S288F 0.33 tolerated(0.07) possibly_damaging(0.781) TCGA-GN-A266-06 19 55106129 55106129 G A LILRA1 Splice_Site p.X24_splice 0.28 TCGA-GN-A266-06 19 55106176 55106176 C T LILRA1 Silent p.I39I 0.18 TCGA-GN-A266-06 19 55144765 55144765 C T LILRB1 Silent p.V419V 0.10 TCGA-GN-A266-06 19 55146120 55146120 C T LILRB1 Silent p.I464I 0.19 TCGA-GN-A266-06 19 55301487 55301487 G A CTB-61M7.1 RNA 0.24 TCGA-GN-A266-06 19 55324656 55324656 C T KIR2DL4 Intron 0.60 TCGA-GN-A266-06 19 55350941 55350941 G A KIR2DS4 Silent p.E143E 0.29 TCGA-GN-A266-06 19 55378036 55378036 C T KIR3DL2 Silent p.F406F 0.27 TCGA-GN-A266-06 19 55401169 55401169 G A FCAR Nonsense_Mutation p.W268* 0.34 TCGA-GN-A266-06 19 55449535 55449535 G A NLRP7 Missense_Mutation p.S669F 0.31 deleterious(0.01) possibly_damaging(0.897) TCGA-GN-A266-06 19 55451341 55451341 G A NLRP7 Silent p.L282L 0.30 TCGA-GN-A266-06 19 55492998 55492998 G A NLRP2 Silent p.T137T 0.31 TCGA-GN-A266-06 19 55591120 55591120 G A EPS8L1 Silent p.R60R 0.28 TCGA-GN-A266-06 19 55649424 55649424 C T TNNT1 Missense_Mutation p.E136K 0.21 deleterious(0.01) possibly_damaging(0.902) TCGA-GN-A266-06 19 55687180 55687180 G A SYT5 Missense_Mutation p.P146L 0.28 deleterious(0.02) benign(0) TCGA-GN-A266-06 19 5595504 5595504 G A SAFB2 Missense_Mutation p.S596F 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-GN-A266-06 19 56173923 56173923 C T U2AF2 Missense_Mutation p.A181V 0.12 tolerated(0.07) benign(0.005) TCGA-GN-A266-06 19 56204341 56204341 C T EPN1 Missense_Mutation p.P487L 0.23 tolerated(0.05) benign(0.184) TCGA-GN-A266-06 19 56204342 56204342 C T EPN1 Silent p.P487P 0.23 TCGA-GN-A266-06 19 56223927 56223927 G A NLRP9 Missense_Mutation p.S844F 0.17 deleterious(0) benign(0.231) TCGA-GN-A266-06 19 56226547 56226547 G A NLRP9 Missense_Mutation p.S792F 0.41 deleterious(0.05) benign(0.033) TCGA-GN-A266-06 19 56244734 56244734 C T NLRP9 Missense_Mutation p.G155R 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 56368969 56368969 A T NLRP4 Intron 0.26 TCGA-GN-A266-06 19 56368970 56368970 A T NLRP4 Intron 0.25 TCGA-GN-A266-06 19 56369963 56369963 C T NLRP4 Silent p.L402L 0.33 TCGA-GN-A266-06 19 56372834 56372834 G A NLRP4 Missense_Mutation p.D647N 0.32 tolerated(0.3) benign(0.01) TCGA-GN-A266-06 19 56413423 56413423 C T NLRP13 Missense_Mutation p.D923N 0.17 tolerated(0.19) probably_damaging(0.942) TCGA-GN-A266-06 19 56416475 56416475 C T NLRP13 Silent p.L817L 0.11 TCGA-GN-A266-06 19 56423273 56423273 C T NLRP13 Missense_Mutation p.R637Q 0.33 tolerated(0.54) benign(0) TCGA-GN-A266-06 19 56423744 56423744 C T NLRP13 Nonsense_Mutation p.W480* 0.41 TCGA-GN-A266-06 19 56459228 56459228 C T NLRP8 5'UTR 0.29 TCGA-GN-A266-06 19 56895941 56895941 G A ZNF582 Missense_Mutation p.P282L 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 19 57022895 57022895 C T ZNF471 5'UTR 0.29 TCGA-GN-A266-06 19 57328787 57328787 G A PEG3 Silent p.F341F 0.12 TCGA-GN-A266-06 19 57642615 57642615 G A USP29 Missense_Mutation p.D858N 0.32 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 57642902 57642902 G A USP29 3'UTR 0.34 TCGA-GN-A266-06 19 57649931 57649931 G A ZIM3 Silent p.F17F 0.37 TCGA-GN-A266-06 19 5772804 5772804 G A CATSPERD Missense_Mutation p.R590Q 0.19 tolerated(0.22) benign(0.062) TCGA-GN-A266-06 19 58144753 58144753 C T ZNF211 Silent p.V13V 0.25 TCGA-GN-A266-06 19 58189923 58189923 C T ZSCAN4 Missense_Mutation p.P318S 0.27 tolerated(0.26) benign(0.033) TCGA-GN-A266-06 19 58198211 58198211 C T ZNF551 Missense_Mutation p.P190S 0.15 tolerated(0.9) benign(0) TCGA-GN-A266-06 19 58421035 58421035 G A ZNF417 Missense_Mutation p.P204L 0.26 tolerated(0.07) benign(0.11) TCGA-GN-A266-06 19 5843939 5843939 C T FUT3 Silent p.R304R 0.38 TCGA-GN-A266-06 19 5844471 5844471 G A FUT3 Missense_Mutation p.P127L 0.33 tolerated(0.51) benign(0.107) TCGA-GN-A266-06 19 5844472 5844472 G A FUT3 Missense_Mutation p.P127S 0.32 deleterious(0.01) possibly_damaging(0.764) TCGA-GN-A266-06 19 58578377 58578377 C T ZNF135 Silent p.L199L 0.17 TCGA-GN-A266-06 19 58797124 58797124 G A ZNF8 Silent p.Q36Q 0.39 TCGA-GN-A266-06 19 58850520 58850520 C A ZSCAN22 Missense_Mutation p.P435Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 19 58992118 58992118 G A ZNF446 3'UTR 0.40 TCGA-GN-A266-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.33 TCGA-GN-A266-06 19 6040144 6040144 G A RFX2 Silent p.S123S 0.37 TCGA-GN-A266-06 19 6147520 6147520 G A ACSBG2 Missense_Mutation p.G44E 0.29 tolerated(0.07) possibly_damaging(0.798) TCGA-GN-A266-06 19 6387513 6387513 G A GTF2F1 Silent p.T128T 0.38 TCGA-GN-A266-06 19 648902 648902 G A RNF126 Missense_Mutation p.P217L 0.27 tolerated(0.22) benign(0.149) TCGA-GN-A266-06 19 6697421 6697421 C T C3 Silent p.V910V 0.17 TCGA-GN-A266-06 19 6833726 6833726 C T VAV1 Silent p.F571F 0.35 TCGA-GN-A266-06 19 6853061 6853061 C T VAV1 Missense_Mutation p.P768L 0.36 tolerated(0.13) probably_damaging(0.917) TCGA-GN-A266-06 19 6897289 6897289 G A EMR1 Missense_Mutation p.G123E 0.34 tolerated(0.19) benign(0.117) TCGA-GN-A266-06 19 6904114 6904114 C T EMR1 Silent p.G290G 0.29 TCGA-GN-A266-06 19 6904116 6904116 C T EMR1 Missense_Mutation p.S291F 0.28 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 19 694826 694826 C A PRSS57 Missense_Mutation p.C75F 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 19 7172349 7172349 G A INSR Missense_Mutation p.S407F 0.14 deleterious(0) probably_damaging(0.943) TCGA-GN-A266-06 19 7518541 7518541 C T ARHGEF18 Nonsense_Mutation p.Q494* 0.26 TCGA-GN-A266-06 19 7672755 7672755 G A CAMSAP3 Splice_Site p.X234_splice 0.57 TCGA-GN-A266-06 19 7805422 7805422 G A CD209 3'UTR 0.30 TCGA-GN-A266-06 19 814684 814684 G A LPPR3 Missense_Mutation p.P222L 0.27 tolerated_low_confidence(0.13) unknown(0) TCGA-GN-A266-06 19 8152962 8152962 G A FBN3 Missense_Mutation p.L2160F 0.30 deleterious(0.04) possibly_damaging(0.485) TCGA-GN-A266-06 19 8436279 8436279 C T ANGPTL4 Silent p.L304L 0.26 TCGA-GN-A266-06 19 8438869 8438869 G A ANGPTL4 3'UTR 0.30 TCGA-GN-A266-06 19 8467468 8467468 G A RAB11B Intron 0.40 TCGA-GN-A266-06 19 8553760 8553760 C T HNRNPM 3'UTR 0.29 TCGA-GN-A266-06 19 880010 880010 G A MED16 Missense_Mutation p.P427L 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-GN-A266-06 19 8841458 8841458 C T OR2Z1 Missense_Mutation p.S23L 0.12 tolerated(0.75) benign(0.004) TCGA-GN-A266-06 19 8922501 8922501 G A ZNF558 Missense_Mutation p.S222F 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-GN-A266-06 19 8931947 8931947 G A ZNF558 Silent p.F52F 0.35 TCGA-GN-A266-06 19 8953965 8953965 G A MBD3L1 3'UTR 0.29 TCGA-GN-A266-06 19 9013882 9013882 C T MUC16 Silent p.G12836G 0.28 TCGA-GN-A266-06 19 9019338 9019338 G A MUC16 Missense_Mutation p.P12517S 0.44 benign(0.19) TCGA-GN-A266-06 19 9045613 9045613 G A MUC16 Silent p.T12006T 0.43 TCGA-GN-A266-06 19 9045877 9045877 C T MUC16 Nonsense_Mutation p.W11918* 0.40 TCGA-GN-A266-06 19 9046043 9046043 G A MUC16 Missense_Mutation p.P11863L 0.26 benign(0.014) TCGA-GN-A266-06 19 9048241 9048241 G A MUC16 Silent p.A11130A 0.13 TCGA-GN-A266-06 19 9057093 9057093 G A MUC16 Missense_Mutation p.S10118F 0.35 possibly_damaging(0.683) TCGA-GN-A266-06 19 9060940 9060940 G A MUC16 Missense_Mutation p.P8836S 0.36 unknown(0) TCGA-GN-A266-06 19 9063501 9063501 G A MUC16 Missense_Mutation p.S7982L 0.24 unknown(0) TCGA-GN-A266-06 19 9063573 9063573 G A MUC16 Missense_Mutation p.S7958L 0.11 unknown(0) TCGA-GN-A266-06 19 9063963 9063963 G A MUC16 Missense_Mutation p.S7828F 0.09 unknown(0) TCGA-GN-A266-06 19 9067342 9067342 G A MUC16 Missense_Mutation p.P6702S 0.27 unknown(0) TCGA-GN-A266-06 19 9069097 9069097 C T MUC16 Missense_Mutation p.D6117N 0.31 unknown(0) TCGA-GN-A266-06 19 9070394 9070394 C T MUC16 Silent p.T5684T 0.42 TCGA-GN-A266-06 19 9071371 9071371 G A MUC16 Missense_Mutation p.P5359S 0.38 unknown(0) TCGA-GN-A266-06 19 9071723 9071723 G A MUC16 Silent p.S5241S 0.32 TCGA-GN-A266-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.30 unknown(0) TCGA-GN-A266-06 19 9072251 9072251 G A MUC16 Silent p.S5065S 0.31 TCGA-GN-A266-06 19 9072320 9072320 G A MUC16 Silent p.S5042S 0.26 TCGA-GN-A266-06 19 9072763 9072763 G A MUC16 Missense_Mutation p.P4895S 0.31 unknown(0) TCGA-GN-A266-06 19 9073527 9073527 G T MUC16 Missense_Mutation p.S4640Y 0.10 unknown(0) TCGA-GN-A266-06 19 9073586 9073586 G A MUC16 Silent p.I4620I 0.28 TCGA-GN-A266-06 19 9074665 9074665 G A MUC16 Missense_Mutation p.P4261S 0.29 unknown(0) TCGA-GN-A266-06 19 9075414 9075414 G A MUC16 Missense_Mutation p.S4011F 0.35 unknown(0) TCGA-GN-A266-06 19 9077766 9077766 G A MUC16 Missense_Mutation p.S3227F 0.26 unknown(0) TCGA-GN-A266-06 19 9080501 9080501 C T MUC16 Missense_Mutation p.G3177E 0.10 unknown(0) TCGA-GN-A266-06 19 9083076 9083076 G A MUC16 Silent p.S2913S 0.11 TCGA-GN-A266-06 19 9084264 9084264 C T MUC16 Missense_Mutation p.M2517I 0.28 unknown(0) TCGA-GN-A266-06 19 9089446 9089446 G A MUC16 Missense_Mutation p.S790F 0.37 unknown(0) TCGA-GN-A266-06 19 9089866 9089866 G A MUC16 Missense_Mutation p.S650F 0.32 unknown(0) TCGA-GN-A266-06 19 9089986 9089986 G A MUC16 Missense_Mutation p.S610L 0.30 unknown(0) TCGA-GN-A266-06 19 9090653 9090653 C T MUC16 Missense_Mutation p.E388K 0.34 unknown(0) TCGA-GN-A266-06 19 9091052 9091052 C T MUC16 Missense_Mutation p.E255K 0.29 unknown(0) TCGA-GN-A266-06 19 9225996 9225996 G A OR7G1 Silent p.S148S 0.28 TCGA-GN-A266-06 19 9226280 9226280 G A OR7G1 Missense_Mutation p.H54Y 0.35 deleterious(0.02) possibly_damaging(0.826) TCGA-GN-A266-06 19 9236968 9236968 C T OR7G3 Missense_Mutation p.R220Q 0.27 tolerated(1) benign(0.003) TCGA-GN-A266-06 19 9296697 9296697 G A OR7D2 Silent p.K80K 0.34 TCGA-GN-A266-06 19 9324650 9324650 G A OR7D4 Silent p.F288F 0.25 TCGA-GN-A266-06 19 9325025 9325025 C T OR7D4 Missense_Mutation p.M163I 0.40 tolerated(0.25) benign(0.02) TCGA-GN-A266-06 19 9362580 9362580 G C OR7E24 Missense_Mutation p.R287S 0.33 tolerated(0.11) benign(0.378) TCGA-GN-A266-06 19 9406741 9406741 A T ZNF699 Missense_Mutation p.Y447N 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 19 9406742 9406742 G A ZNF699 Silent p.P446P 0.26 TCGA-GN-A266-06 19 9453397 9453397 C T ZNF559 Missense_Mutation p.L424F 0.16 deleterious(0.02) probably_damaging(0.983) TCGA-GN-A266-06 19 9491886 9491886 C T ZNF177 Silent p.F293F 0.10 TCGA-GN-A266-06 19 9801846 9801846 C T ZNF812 Silent p.G111G 0.12 TCGA-GN-A266-06 19 9922366 9922366 G A FBXL12 Missense_Mutation p.L63F 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-GN-A266-06 1 100154504 100154504 G A PALMD Missense_Mutation p.G230S 0.30 tolerated(0.07) probably_damaging(1) TCGA-GN-A266-06 1 100368320 100368320 C T AGL Missense_Mutation p.P1224S 0.45 tolerated(0.33) benign(0.018) TCGA-GN-A266-06 1 101185425 101185425 G A VCAM1 Silent p.G3G 0.21 TCGA-GN-A266-06 1 101705422 101705422 G A S1PR1 Silent p.E294E 0.30 TCGA-GN-A266-06 1 10182103 10182103 C T UBE4B Missense_Mutation p.T508I 0.34 tolerated(0.24) benign(0.009) TCGA-GN-A266-06 1 102269929 102269929 G A OLFM3 Silent p.F414F 0.41 TCGA-GN-A266-06 1 103444981 103444981 C T COL11A1 Missense_Mutation p.G856E 0.26 unknown(0) TCGA-GN-A266-06 1 103444982 103444982 C T COL11A1 Missense_Mutation p.G856R 0.24 unknown(0) TCGA-GN-A266-06 1 104160673 104160673 G A AMY2A Missense_Mutation p.G89E 0.30 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 1 10720315 10720315 C T CASZ1 Missense_Mutation p.E262K 0.40 deleterious_low_confidence(0.03) benign(0.154) TCGA-GN-A266-06 1 108313335 108313335 C T VAV3 Missense_Mutation p.D191N 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A266-06 1 109743402 109743402 G A KIAA1324 Silent p.K951K 0.33 TCGA-GN-A266-06 1 109743403 109743403 G A KIAA1324 Missense_Mutation p.D952N 0.33 deleterious(0) probably_damaging(0.913) TCGA-GN-A266-06 1 110029767 110029767 C T ATXN7L2 Missense_Mutation p.S146F 0.32 tolerated(0.2) possibly_damaging(0.598) TCGA-GN-A266-06 1 110212119 110212119 C T GSTM2 Missense_Mutation p.R96C 0.38 deleterious(0.01) benign(0.108) TCGA-GN-A266-06 1 110212149 110212149 G A GSTM2 Missense_Mutation p.D106N 0.39 deleterious(0.01) probably_damaging(0.909) TCGA-GN-A266-06 1 11024217 11024217 C T C1orf127 Missense_Mutation p.E162K 0.28 tolerated(0.07) probably_damaging(0.953) TCGA-GN-A266-06 1 110294795 110294795 C T EPS8L3 Missense_Mutation p.G420E 0.36 tolerated(1) benign(0.009) TCGA-GN-A266-06 1 110655500 110655500 G A UBL4B Missense_Mutation p.R115K 0.16 tolerated(0.27) benign(0.018) TCGA-GN-A266-06 1 111061129 111061129 C T KCNA10 Missense_Mutation p.G94E 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 1115497 1115497 G A TTLL10 Missense_Mutation p.G95R 0.18 tolerated_low_confidence(0.16) probably_damaging(0.991) TCGA-GN-A266-06 1 111770380 111770380 C T CHI3L2 Missense_Mutation p.S10F 0.22 tolerated(0.74) benign(0.002) TCGA-GN-A266-06 1 112026336 112026336 C T ADORA3 Silent p.K339K 0.32 TCGA-GN-A266-06 1 112240080 112240080 C T RAP1A Silent p.C48C 0.12 TCGA-GN-A266-06 1 112999697 112999697 C T CTTNBP2NL Missense_Mutation p.P528L 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 11345804 11345804 C T UBIAD1 Silent p.A211A 0.26 TCGA-GN-A266-06 1 1140754 1140754 G A TNFRSF18 Silent p.S102S 0.56 TCGA-GN-A266-06 1 114354713 114354713 G A RSBN1 Missense_Mutation p.P108S 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-GN-A266-06 1 114372236 114372236 C T PTPN22 Missense_Mutation p.G743E 0.27 tolerated(0.1) probably_damaging(0.962) TCGA-GN-A266-06 1 114523261 114523261 C T OLFML3 Intron 0.26 TCGA-GN-A266-06 1 114640423 114640423 C T SYT6 Missense_Mutation p.E396K 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A266-06 1 115141952 115141952 G A DENND2C Silent p.F742F 0.33 TCGA-GN-A266-06 1 115166153 115166153 C T DENND2C Silent p.E306E 0.13 TCGA-GN-A266-06 1 115220031 115220031 G A AMPD1 Silent p.F476F 0.13 TCGA-GN-A266-06 1 115420732 115420732 C T SYCP1 Silent p.I273I 0.24 TCGA-GN-A266-06 1 115487549 115487549 T C SYCP1 Silent p.D700D 0.31 TCGA-GN-A266-06 1 115593133 115593133 C T TSPAN2 Missense_Mutation p.R215Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 1 115615558 115615558 G A TSPAN2 Missense_Mutation p.S47L 0.12 tolerated(0.17) benign(0.006) TCGA-GN-A266-06 1 115828826 115828826 C T NGF Nonsense_Mutation p.W197* 0.25 TCGA-GN-A266-06 1 11596669 11596669 C T PTCHD2 Silent p.L1369L 0.45 TCGA-GN-A266-06 1 116311110 116311110 C T CASQ2 Missense_Mutation p.R18K 0.38 tolerated(0.31) benign(0.002) TCGA-GN-A266-06 1 116577854 116577854 G A SLC22A15 Missense_Mutation p.D331N 0.31 tolerated(0.17) possibly_damaging(0.87) TCGA-GN-A266-06 1 117307147 117307147 G A CD2 Missense_Mutation p.G219R 0.39 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 1 117311250 117311250 G A CD2 Missense_Mutation p.G301R 0.22 deleterious(0.01) probably_damaging(0.925) TCGA-GN-A266-06 1 117311293 117311293 C T CD2 Missense_Mutation p.P315L 0.24 deleterious(0.01) benign(0.163) TCGA-GN-A266-06 1 117503968 117503968 G A PTGFRN Silent p.A439A 0.23 TCGA-GN-A266-06 1 117554458 117554458 G A CD101 Silent p.E237E 0.33 TCGA-GN-A266-06 1 118166142 118166142 G A FAM46C Missense_Mutation p.D218N 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-GN-A266-06 1 118497969 118497969 G A WDR3 Missense_Mutation p.G814E 0.21 deleterious(0.02) benign(0.049) TCGA-GN-A266-06 1 118497970 118497970 G A WDR3 Silent p.G814G 0.21 TCGA-GN-A266-06 1 11889376 11889376 C T CLCN6 Silent p.L415L 0.33 TCGA-GN-A266-06 1 11894319 11894319 C T CLCN6 Missense_Mutation p.S518L 0.29 tolerated(0.15) benign(0.042) TCGA-GN-A266-06 1 119427478 119427478 C T TBX15 Missense_Mutation p.M456I 0.17 tolerated_low_confidence(0.18) benign(0.004) TCGA-GN-A266-06 1 119427732 119427732 G A TBX15 Nonsense_Mutation p.Q372* 0.43 TCGA-GN-A266-06 1 119466167 119466167 G A TBX15 Silent p.F145F 0.31 TCGA-GN-A266-06 1 120306903 120306903 C T HMGCS2 Missense_Mutation p.D151N 0.31 deleterious(0.01) benign(0.312) TCGA-GN-A266-06 1 120436514 120436514 G A ADAM30 3'UTR 0.33 TCGA-GN-A266-06 1 120437336 120437336 G A ADAM30 Nonsense_Mutation p.R542* 0.32 TCGA-GN-A266-06 1 120438510 120438510 C T ADAM30 Silent p.K150K 0.32 TCGA-GN-A266-06 1 12082306 12082306 C T MIIP Missense_Mutation p.S90L 0.36 tolerated(0.42) benign(0.07) TCGA-GN-A266-06 1 12328876 12328876 C T VPS13D Missense_Mutation p.P639S 0.32 probably_damaging(0.959) TCGA-GN-A266-06 1 12389938 12389938 C T VPS13D Silent p.F2750F 0.24 TCGA-GN-A266-06 1 12639399 12639399 G A DHRS3 Silent p.V127V 0.44 TCGA-GN-A266-06 1 12806356 12806356 G A C1orf158 5'UTR 0.31 TCGA-GN-A266-06 1 12837798 12837798 G A PRAMEF12 3'UTR 0.54 TCGA-GN-A266-06 1 12855945 12855945 C T PRAMEF1 Silent p.L409L 0.23 TCGA-GN-A266-06 1 12884671 12884671 C T PRAMEF11 3'UTR 0.44 TCGA-GN-A266-06 1 12887352 12887352 C T PRAMEF11 Missense_Mutation p.E169K 0.28 tolerated(0.06) possibly_damaging(0.827) TCGA-GN-A266-06 1 12907649 12907649 C T HNRNPCL1 Missense_Mutation p.G165E 0.34 tolerated(0.29) possibly_damaging(0.493) TCGA-GN-A266-06 1 12920100 12920100 C T PRAMEF2 Silent p.F280F 0.32 TCGA-GN-A266-06 1 12941920 12941920 C T PRAMEF4 Silent p.Q210Q 0.20 TCGA-GN-A266-06 1 13716932 13716932 G A PRAMEF17 Missense_Mutation p.R140K 0.19 tolerated(0.11) benign(0.157) TCGA-GN-A266-06 1 13940889 13940889 A T PDPN Missense_Mutation p.K231N 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 1 143767510 143767510 G A PPIAL4G Silent p.F113F 0.06 TCGA-GN-A266-06 1 144886274 144886274 G A PDE4DIP Missense_Mutation p.S987F 0.18 tolerated(0.18) possibly_damaging(0.481) TCGA-GN-A266-06 1 145103977 145103977 C T SEC22B RNA 0.15 TCGA-GN-A266-06 1 145309973 145309973 C T NBPF10 Missense_Mutation p.P571S 0.15 benign(0.432) TCGA-GN-A266-06 1 145416699 145416699 G A HFE2 Silent p.K348K 0.34 TCGA-GN-A266-06 1 145562600 145562600 C T ANKRD35 Missense_Mutation p.P763L 0.25 tolerated(0.15) benign(0.027) TCGA-GN-A266-06 1 145747241 145747241 A C PDZK1 Missense_Mutation p.E66D 0.23 tolerated(0.2) benign(0.138) TCGA-GN-A266-06 1 147122015 147122015 G A ACP6 Missense_Mutation p.P303L 0.37 tolerated(0.47) benign(0.02) TCGA-GN-A266-06 1 147380418 147380418 G A GJA8 Silent p.E112E 0.38 TCGA-GN-A266-06 1 147381356 147381356 G A GJA8 Missense_Mutation p.R425Q 0.35 deleterious(0) unknown(0) TCGA-GN-A266-06 1 149879733 149879733 G A SV2A Missense_Mutation p.P469S 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A266-06 1 149901597 149901597 G A MTMR11 Missense_Mutation p.P620L 0.25 tolerated(0.27) benign(0.016) TCGA-GN-A266-06 1 149901598 149901598 G A MTMR11 Missense_Mutation p.P620S 0.26 tolerated(0.58) benign(0.016) TCGA-GN-A266-06 1 150116887 150116887 T C VPS45 Silent p.S542S 0.28 TCGA-GN-A266-06 1 150444874 150444874 C T RPRD2 Silent p.S1150S 0.22 TCGA-GN-A266-06 1 150482192 150482192 C T ECM1 Silent p.H59H 0.36 TCGA-GN-A266-06 1 150672652 150672652 C T HORMAD1 Missense_Mutation p.G347E 0.24 tolerated(0.64) benign(0.013) TCGA-GN-A266-06 1 150705459 150705459 G A CTSS 3'UTR 0.40 TCGA-GN-A266-06 1 150936860 150936860 C T CERS2 3'Flank 0.29 TCGA-GN-A266-06 1 150936861 150936861 C T CERS2 3'Flank 0.31 TCGA-GN-A266-06 1 151090540 151090540 C T GABPB2 Silent p.Y385Y 0.35 TCGA-GN-A266-06 1 151108594 151108594 A C SEMA6C Silent p.S384S 0.28 TCGA-GN-A266-06 1 151110475 151110475 G A SEMA6C Silent p.S218S 0.32 TCGA-GN-A266-06 1 151314724 151314724 C T RFX5 Missense_Mutation p.E597K 0.42 deleterious_low_confidence(0) benign(0.047) TCGA-GN-A266-06 1 151638458 151638458 C T SNX27 Missense_Mutation p.A319V 0.36 tolerated(0.27) possibly_damaging(0.678) TCGA-GN-A266-06 1 152057440 152057440 G A TCHHL1 3'UTR 0.28 TCGA-GN-A266-06 1 152058366 152058366 C T TCHHL1 Missense_Mutation p.G598R 0.37 tolerated(0.52) benign(0.104) TCGA-GN-A266-06 1 152128193 152128193 G A RPTN Missense_Mutation p.S461F 0.33 tolerated(0.12) benign(0.053) TCGA-GN-A266-06 1 152128866 152128866 C T RPTN Missense_Mutation p.D237N 0.35 tolerated(0.24) benign(0.005) TCGA-GN-A266-06 1 152187486 152187486 G A HRNR Missense_Mutation p.R2207C 0.07 unknown(0) TCGA-GN-A266-06 1 152190845 152190845 G A HRNR Missense_Mutation p.S1087L 0.34 unknown(0) TCGA-GN-A266-06 1 152192103 152192103 C T HRNR Missense_Mutation p.D668N 0.34 unknown(0) TCGA-GN-A266-06 1 152279679 152279679 C T FLG Silent p.R2561R 0.27 TCGA-GN-A266-06 1 152282675 152282675 C T FLG Missense_Mutation p.E1563K 0.35 possibly_damaging(0.621) TCGA-GN-A266-06 1 152283599 152283599 C T FLG Missense_Mutation p.E1255K 0.34 possibly_damaging(0.621) TCGA-GN-A266-06 1 152287235 152287235 G A FLG Intron 0.34 TCGA-GN-A266-06 1 152323556 152323556 C T FLG2 Missense_Mutation p.G2236S 0.37 benign(0.023) TCGA-GN-A266-06 1 152324797 152324797 C T FLG2 Missense_Mutation p.R1822Q 0.35 benign(0.079) TCGA-GN-A266-06 1 152324960 152324960 C T FLG2 Missense_Mutation p.G1768R 0.31 possibly_damaging(0.517) TCGA-GN-A266-06 1 152325322 152325322 C T FLG2 Missense_Mutation p.G1647E 0.27 probably_damaging(0.972) TCGA-GN-A266-06 1 152326848 152326848 G A FLG2 Silent p.S1138S 0.36 TCGA-GN-A266-06 1 152327908 152327908 T A FLG2 Missense_Mutation p.Q785L 0.26 unknown(0) TCGA-GN-A266-06 1 152328559 152328559 C T FLG2 Missense_Mutation p.G568E 0.36 unknown(0) TCGA-GN-A266-06 1 152329585 152329585 C T FLG2 Missense_Mutation p.G226E 0.14 unknown(0) TCGA-GN-A266-06 1 152538265 152538265 C T LCE3E 3'UTR 0.31 TCGA-GN-A266-06 1 152648564 152648564 C T LCE2C Missense_Mutation p.P25S 0.27 tolerated_low_confidence(0.42) unknown(0) TCGA-GN-A266-06 1 152648565 152648565 C T LCE2C Missense_Mutation p.P25L 0.26 tolerated_low_confidence(0.98) unknown(0) TCGA-GN-A266-06 1 152732846 152732846 G A KPRP Missense_Mutation p.R261Q 0.15 tolerated(1) benign(0.016) TCGA-GN-A266-06 1 152760186 152760186 C T LCE1E 3'UTR 0.25 TCGA-GN-A266-06 1 152785023 152785023 C T LCE1B Missense_Mutation p.P34L 0.32 tolerated_low_confidence(0.2) unknown(0) TCGA-GN-A266-06 1 152882695 152882695 G A IVL Missense_Mutation p.R141K 0.31 tolerated_low_confidence(0.12) unknown(0) TCGA-GN-A266-06 1 152882714 152882714 G A IVL Missense_Mutation p.M147I 0.34 tolerated_low_confidence(0.27) unknown(0) TCGA-GN-A266-06 1 152944534 152944534 G A SPRR4 Silent p.P56P 0.26 TCGA-GN-A266-06 1 153012660 153012660 G A SPRR2D Missense_Mutation p.P55S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 1 153084977 153084977 G A SPRR2F 3'UTR 0.34 TCGA-GN-A266-06 1 153276396 153276396 G A PGLYRP3 Nonsense_Mutation p.Q156* 0.23 TCGA-GN-A266-06 1 153362599 153362599 C T S100A8 Missense_Mutation p.E88K 0.18 tolerated(1) benign(0) TCGA-GN-A266-06 1 153587382 153587382 C T S100A14 Silent p.E98E 0.23 TCGA-GN-A266-06 1 153661483 153661483 G A NPR1 Silent p.A824A 0.35 TCGA-GN-A266-06 1 153902753 153902753 G A DENND4B 3'UTR 0.22 TCGA-GN-A266-06 1 153946425 153946425 G A CREB3L4 Missense_Mutation p.E358K 0.30 tolerated(0.71) benign(0.005) TCGA-GN-A266-06 1 154026848 154026848 G A NUP210L Silent p.I1113I 0.31 TCGA-GN-A266-06 1 154091221 154091221 G A NUP210L Missense_Mutation p.P464S 0.26 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 1 154931774 154931774 G A PYGO2 Silent p.L234L 0.30 TCGA-GN-A266-06 1 155005935 155005935 G A DCST2 Silent p.L81L 0.31 TCGA-GN-A266-06 1 155028619 155028619 C T ADAM15 Silent p.L270L 0.27 TCGA-GN-A266-06 1 155233748 155233748 G A CLK2 Missense_Mutation p.P436L 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 155255658 155255658 C T HCN3 Silent p.S460S 0.30 TCGA-GN-A266-06 1 155448167 155448167 G A ASH1L Silent p.P1498P 0.30 TCGA-GN-A266-06 1 155920976 155920976 G A ARHGEF2 Missense_Mutation p.R783W 0.17 deleterious(0) possibly_damaging(0.892) TCGA-GN-A266-06 1 156006855 156006855 G A UBQLN4 Missense_Mutation p.R574C 0.13 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 156352442 156352442 C T RHBG Intron 0.45 TCGA-GN-A266-06 1 156642749 156642749 G A NES Missense_Mutation p.P411S 0.31 tolerated(0.06) possibly_damaging(0.492) TCGA-GN-A266-06 1 156811534 156811534 C T INSRR Silent p.G1150G 0.36 TCGA-GN-A266-06 1 156843534 156843534 C T NTRK1 Silent p.S320S 0.35 TCGA-GN-A266-06 1 156878059 156878059 C T PEAR1 Missense_Mutation p.R348C 0.62 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A266-06 1 157514310 157514310 C T FCRL5 Missense_Mutation p.A196T 0.27 tolerated(0.36) benign(0.303) TCGA-GN-A266-06 1 157514687 157514687 G A FCRL5 Missense_Mutation p.R165C 0.14 tolerated(0.15) possibly_damaging(0.849) TCGA-GN-A266-06 1 157516808 157516808 G A FCRL5 Nonsense_Mutation p.Q78* 0.36 TCGA-GN-A266-06 1 157516818 157516818 G A FCRL5 Silent p.I74I 0.36 TCGA-GN-A266-06 1 157667587 157667587 G A FCRL3 Missense_Mutation p.P141S 0.23 tolerated(0.81) benign(0.017) TCGA-GN-A266-06 1 157670338 157670338 C T FCRL3 5'UTR 0.62 TCGA-GN-A266-06 1 157768003 157768003 G A FCRL1 Silent p.F354F 0.32 TCGA-GN-A266-06 1 157772375 157772375 G A FCRL1 Silent p.I133I 0.28 TCGA-GN-A266-06 1 157801722 157801722 C T CD5L 3'UTR 0.35 TCGA-GN-A266-06 1 157811519 157811519 G A CD5L 5'UTR 0.25 TCGA-GN-A266-06 1 158263016 158263016 A G CD1C Missense_Mutation p.M302V 0.28 tolerated(0.98) benign(0.002) TCGA-GN-A266-06 1 158299729 158299729 C T CD1B Missense_Mutation p.E174K 0.34 tolerated(0.13) benign(0.013) TCGA-GN-A266-06 1 158300776 158300776 G A CD1B Silent p.G46G 0.35 TCGA-GN-A266-06 1 158325885 158325885 C T CD1E Silent p.I298I 0.16 TCGA-GN-A266-06 1 158326481 158326481 C T CD1E Intron 0.26 TCGA-GN-A266-06 1 158326570 158326570 G A CD1E Missense_Mutation p.G351R 0.35 tolerated(0.3) probably_damaging(0.911) TCGA-GN-A266-06 1 158368604 158368604 G A OR10T2 Missense_Mutation p.S218F 0.10 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 158389728 158389728 G A OR10K2 Missense_Mutation p.S310F 0.16 tolerated(0.05) benign(0.003) TCGA-GN-A266-06 1 158450494 158450494 C T OR10R2 Missense_Mutation p.S276F 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 1 158517231 158517231 G A OR6Y1 Missense_Mutation p.S222F 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 158549442 158549442 G A OR10X1 Missense_Mutation p.S83F 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 158576745 158576745 G A OR10Z1 Missense_Mutation p.E173K 0.13 tolerated(1) benign(0.008) TCGA-GN-A266-06 1 158618341 158618341 C T SPTA1 Silent p.R1224R 0.31 TCGA-GN-A266-06 1 158650416 158650416 C T SPTA1 Missense_Mutation p.G212E 0.25 tolerated(0.92) benign(0.02) TCGA-GN-A266-06 1 158687109 158687109 G A OR6K3 Missense_Mutation p.P266L 0.30 tolerated(0.15) benign(0.029) TCGA-GN-A266-06 1 158725001 158725001 C T OR6K6 Silent p.F132F 0.20 TCGA-GN-A266-06 1 158811981 158811981 G A MNDA Missense_Mutation p.G13E 0.26 tolerated(0.05) possibly_damaging(0.9) TCGA-GN-A266-06 1 158813786 158813786 G A MNDA Silent p.R148R 0.32 TCGA-GN-A266-06 1 158815497 158815497 G A MNDA Missense_Mutation p.G231R 0.42 tolerated(0.1) benign(0.31) TCGA-GN-A266-06 1 15905500 15905500 C T AGMAT Missense_Mutation p.D192N 0.46 deleterious(0.04) benign(0.083) TCGA-GN-A266-06 1 159169565 159169565 C T CADM3 Missense_Mutation p.S360F 0.21 deleterious(0.01) possibly_damaging(0.889) TCGA-GN-A266-06 1 159272208 159272208 C T FCER1A Silent p.F18F 0.31 TCGA-GN-A266-06 1 159275788 159275788 C T FCER1A Silent p.L114L 0.34 TCGA-GN-A266-06 1 159277696 159277696 C T FCER1A Missense_Mutation p.P250S 0.19 tolerated(0.15) unknown(0) TCGA-GN-A266-06 1 159409968 159409968 C T OR10J1 Silent p.P140P 0.15 TCGA-GN-A266-06 1 159505762 159505762 G A OR10J5 Silent p.F12F 0.34 TCGA-GN-A266-06 1 159684324 159684324 G A CRP 5'UTR 0.21 TCGA-GN-A266-06 1 159799890 159799890 C T SLAMF8 Missense_Mutation p.P92L 0.38 deleterious(0.01) possibly_damaging(0.615) TCGA-GN-A266-06 1 159802870 159802870 G A SLAMF8 Missense_Mutation p.G191E 0.31 deleterious(0.02) probably_damaging(0.91) TCGA-GN-A266-06 1 159897056 159897056 C T IGSF9 3'UTR 0.21 TCGA-GN-A266-06 1 159898388 159898388 G A IGSF9 Silent p.P930P 0.20 TCGA-GN-A266-06 1 159898389 159898389 G A IGSF9 Missense_Mutation p.P930L 0.20 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 1 160263246 160263246 G A COPA Missense_Mutation p.S904F 0.41 deleterious(0.04) benign(0.008) TCGA-GN-A266-06 1 160340686 160340686 G A NHLH1 Silent p.R55R 0.18 TCGA-GN-A266-06 1 16063165 16063165 G A SLC25A34 Missense_Mutation p.R62Q 0.21 tolerated(0.06) benign(0.148) TCGA-GN-A266-06 1 16063167 16063167 G A SLC25A34 Missense_Mutation p.A63T 0.20 tolerated(0.77) benign(0.024) TCGA-GN-A266-06 1 160654584 160654584 C T CD48 Intron 0.52 TCGA-GN-A266-06 1 160793421 160793421 C T LY9 Silent p.P555P 0.34 TCGA-GN-A266-06 1 160797610 160797610 G A LY9 3'UTR 0.37 TCGA-GN-A266-06 1 16095027 16095027 C A FBLIM1 Missense_Mutation p.P148Q 0.37 tolerated(0.6) benign(0.144) TCGA-GN-A266-06 1 161019038 161019038 C T ARHGAP30 Silent p.L591L 0.41 TCGA-GN-A266-06 1 161022294 161022294 G A ARHGAP30 Silent p.I292I 0.13 TCGA-GN-A266-06 1 161022330 161022330 C T ARHGAP30 Silent p.R280R 0.45 TCGA-GN-A266-06 1 161044424 161044424 G A PVRL4 Missense_Mutation p.S326F 0.44 deleterious(0.03) benign(0.001) TCGA-GN-A266-06 1 161518461 161518461 G A FCGR3A Silent p.L59L 0.16 TCGA-GN-A266-06 1 162767625 162767625 C T HSD17B7 Silent p.G122G 0.21 TCGA-GN-A266-06 1 162767626 162767626 C T HSD17B7 Silent p.L123L 0.20 TCGA-GN-A266-06 1 163039213 163039213 G A RGS4 Missense_Mutation p.R77Q 0.35 deleterious_low_confidence(0) benign(0.238) TCGA-GN-A266-06 1 163117049 163117049 G A RGS5 3'UTR 0.40 TCGA-GN-A266-06 1 163295907 163295907 C T NUF2 Silent p.I22I 0.25 TCGA-GN-A266-06 1 16343579 16343579 C T HSPB7 Missense_Mutation p.R108Q 0.28 tolerated(0.35) benign(0.046) TCGA-GN-A266-06 1 16353030 16353030 G A CLCNKA Splice_Site p.X167_splice 0.15 TCGA-GN-A266-06 1 16353031 16353031 G T CLCNKA Missense_Mutation p.G167C 0.16 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 16355340 16355340 G A CLCNKA Silent p.R351R 0.38 TCGA-GN-A266-06 1 16460021 16460021 C T EPHA2 Missense_Mutation p.E607K 0.40 deleterious(0) possibly_damaging(0.572) TCGA-GN-A266-06 1 16461625 16461625 G A EPHA2 Silent p.D496D 0.38 TCGA-GN-A266-06 1 165398114 165398114 C T RXRG Missense_Mutation p.D47N 0.26 tolerated_low_confidence(1) benign(0.002) TCGA-GN-A266-06 1 165533156 165533156 G A LRRC52 3'UTR 0.35 TCGA-GN-A266-06 1 166039757 166039757 G A FAM78B Silent p.F169F 0.36 TCGA-GN-A266-06 1 166831521 166831521 C T TADA1 Silent p.G153G 0.30 TCGA-GN-A266-06 1 166831522 166831522 C T TADA1 Missense_Mutation p.G153E 0.29 deleterious(0) probably_damaging(0.984) TCGA-GN-A266-06 1 166904650 166904650 A C ILDR2 Silent p.P256P 0.36 TCGA-GN-A266-06 1 166958650 166958650 G A MAEL Missense_Mutation p.E21K 0.29 deleterious(0.04) possibly_damaging(0.645) TCGA-GN-A266-06 1 167032879 167032879 G A GPA33 Missense_Mutation p.P171S 0.34 deleterious(0) probably_damaging(0.968) TCGA-GN-A266-06 1 167042670 167042670 G A GPA33 Silent p.S50S 0.34 TCGA-GN-A266-06 1 167097064 167097064 C T DUSP27 Missense_Mutation p.S899F 0.28 tolerated(0.1) probably_damaging(0.931) TCGA-GN-A266-06 1 167814809 167814809 C T ADCY10 Missense_Mutation p.G1000E 0.22 tolerated(0.07) benign(0.027) TCGA-GN-A266-06 1 168344851 168344851 G A MIR557 RNA 0.30 TCGA-GN-A266-06 1 168698215 168698215 C T DPT Silent p.K66K 0.33 TCGA-GN-A266-06 1 16945450 16945450 G A RP5-1182A14.5 3'Flank 0.08 TCGA-GN-A266-06 1 169581510 169581510 T C SELP Silent p.E302E 0.27 TCGA-GN-A266-06 1 169586518 169586518 C T SELP Missense_Mutation p.D77N 0.24 tolerated(0.1) benign(0.102) TCGA-GN-A266-06 1 169672407 169672407 G A SELL Missense_Mutation p.P327L 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 169698761 169698761 G A SELE Nonsense_Mutation p.Q257* 0.30 TCGA-GN-A266-06 1 170952613 170952613 C T MROH9 Missense_Mutation p.P223S 0.28 tolerated(0.69) benign(0.003) TCGA-GN-A266-06 1 170964595 170964595 C T MROH9 Silent p.F420F 0.35 TCGA-GN-A266-06 1 170964596 170964596 C T MROH9 Missense_Mutation p.P421S 0.35 deleterious(0) probably_damaging(0.99) TCGA-GN-A266-06 1 170967413 170967413 G A MROH9 Missense_Mutation p.E532K 0.35 tolerated(0.1) benign(0.332) TCGA-GN-A266-06 1 171083156 171083156 G A FMO3 Silent p.R279R 0.25 TCGA-GN-A266-06 1 171168536 171168536 C T FMO2 Missense_Mutation p.P179L 0.37 deleterious(0) probably_damaging(0.965) TCGA-GN-A266-06 1 171227251 171227251 G A FMO1 Missense_Mutation p.G9R 0.41 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 1 171310904 171310904 C T FMO4 Missense_Mutation p.L535F 0.35 tolerated(0.25) benign(0.003) TCGA-GN-A266-06 1 172431348 172431348 G A C1orf105 Missense_Mutation p.D102N 0.43 tolerated(0.23) possibly_damaging(0.728) TCGA-GN-A266-06 1 17277559 17277559 C T CROCC Missense_Mutation p.S983F 0.37 probably_damaging(0.935) TCGA-GN-A266-06 1 173013110 173013110 C T TNFSF18 Splice_Site p.X75_splice 0.28 TCGA-GN-A266-06 1 17301806 17301806 T A MFAP2 Missense_Mutation p.I136F 0.40 deleterious(0) probably_damaging(0.984) TCGA-GN-A266-06 1 173495844 173495844 C T SLC9C2 Missense_Mutation p.E775K 0.30 tolerated(0.65) benign(0.015) TCGA-GN-A266-06 1 173567081 173567081 C T SLC9C2 Missense_Mutation p.D107N 0.23 deleterious(0.02) benign(0.272) TCGA-GN-A266-06 1 175054614 175054614 C T TNN Silent p.L436L 0.20 TCGA-GN-A266-06 1 175096203 175096203 C T TNN Silent p.F1009F 0.37 TCGA-GN-A266-06 1 175335252 175335252 G A TNR Silent p.L692L 0.34 TCGA-GN-A266-06 1 175375479 175375479 G A TNR Silent p.A124A 0.31 TCGA-GN-A266-06 1 17603042 17603042 G A PADI3 Missense_Mutation p.V446M 0.33 deleterious(0) possibly_damaging(0.886) TCGA-GN-A266-06 1 17609397 17609397 C T PADI3 Silent p.I606I 0.15 TCGA-GN-A266-06 1 17609595 17609595 C T PADI3 3'UTR 0.32 TCGA-GN-A266-06 1 176526089 176526089 G A PAPPA2 Missense_Mutation p.G211R 0.28 tolerated(0.27) benign(0.012) TCGA-GN-A266-06 1 176640163 176640163 C T PAPPA2 Silent p.F683F 0.17 TCGA-GN-A266-06 1 176664920 176664920 C T PAPPA2 Missense_Mutation p.R891C 0.28 tolerated(0.17) possibly_damaging(0.724) TCGA-GN-A266-06 1 176671742 176671742 G A PAPPA2 Splice_Site p.X1079_splice 0.29 TCGA-GN-A266-06 1 176709131 176709131 C T PAPPA2 Missense_Mutation p.S1317L 0.28 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 1 176738765 176738765 C T PAPPA2 Missense_Mutation p.S1449F 0.41 tolerated(0.36) possibly_damaging(0.653) TCGA-GN-A266-06 1 176740190 176740190 T A PAPPA2 Missense_Mutation p.I1530N 0.39 tolerated(0.4) benign(0.073) TCGA-GN-A266-06 1 176853578 176853578 C T ASTN1 Silent p.L1041L 0.39 TCGA-GN-A266-06 1 17690199 17690199 C T PADI4 Silent p.T647T 0.31 TCGA-GN-A266-06 1 176926927 176926927 C T ASTN1 Missense_Mutation p.E592K 0.40 deleterious(0.01) probably_damaging(0.972) TCGA-GN-A266-06 1 177030393 177030393 C T ASTN1 Missense_Mutation p.G98R 0.37 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-GN-A266-06 1 177250287 177250287 G A BRINP2 Missense_Mutation p.E659K 0.28 deleterious(0.05) probably_damaging(0.985) TCGA-GN-A266-06 1 177930758 177930758 G A SEC16B Missense_Mutation p.P252S 0.22 tolerated(0.9) benign(0.005) TCGA-GN-A266-06 1 178846645 178846646 - AGATAT RALGPS2 In_Frame_Ins p.D208_L209insID 0.29 TCGA-GN-A266-06 1 179497543 179497543 G A AXDND1 Missense_Mutation p.E898K 0.18 tolerated(1) benign(0.002) TCGA-GN-A266-06 1 179631338 179631338 G A TDRD5 Missense_Mutation p.G808R 0.46 tolerated(0.18) benign(0.011) TCGA-GN-A266-06 1 180065016 180065016 C T CEP350 Missense_Mutation p.A2957V 0.20 benign(0.011) TCGA-GN-A266-06 1 180257419 180257419 A G ACBD6 3'UTR 0.35 TCGA-GN-A266-06 1 180905581 180905581 C T KIAA1614 Missense_Mutation p.P846S 0.28 tolerated(0.26) benign(0.015) TCGA-GN-A266-06 1 181695218 181695218 A G CACNA1E Silent p.E720E 0.26 TCGA-GN-A266-06 1 181754494 181754494 G A CACNA1E Missense_Mutation p.M1873I 0.19 deleterious(0) benign(0.072) TCGA-GN-A266-06 1 181754848 181754848 G A CACNA1E Splice_Site p.X1894_splice 0.30 TCGA-GN-A266-06 1 182025607 182025607 G A ZNF648 Silent p.F513F 0.32 TCGA-GN-A266-06 1 182025748 182025748 G A ZNF648 Silent p.H466H 0.47 TCGA-GN-A266-06 1 182026398 182026398 A G ZNF648 Missense_Mutation p.Y250H 0.44 tolerated(0.07) benign(0.004) TCGA-GN-A266-06 1 182615799 182615799 C T RGS8 3'UTR 0.42 TCGA-GN-A266-06 1 183262847 183262847 C T NMNAT2 Missense_Mutation p.G56E 0.19 deleterious(0.01) benign(0.185) TCGA-GN-A266-06 1 183546838 183546838 C T NCF2 Missense_Mutation p.D88N 0.34 tolerated(0.07) possibly_damaging(0.738) TCGA-GN-A266-06 1 183885674 183885674 C T RGL1 Missense_Mutation p.P650S 0.17 tolerated(0.5) benign(0.008) TCGA-GN-A266-06 1 183909805 183909805 T G COLGALT2 Missense_Mutation p.E505A 0.29 tolerated(0.35) benign(0.012) TCGA-GN-A266-06 1 184041968 184041968 C T TSEN15 Missense_Mutation p.S168F 0.20 deleterious_low_confidence(0.01) benign(0.015) TCGA-GN-A266-06 1 184041970 184041970 C T TSEN15 Missense_Mutation p.L169F 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.601) TCGA-GN-A266-06 1 184764240 184764240 G A FAM129A Silent p.A886A 0.33 TCGA-GN-A266-06 1 184764422 184764422 C T FAM129A Missense_Mutation p.E826K 0.27 deleterious_low_confidence(0.02) benign(0.073) TCGA-GN-A266-06 1 185276156 185276156 A G IVNS1ABP Missense_Mutation p.L216P 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 1 186017874 186017874 G A HMCN1 Splice_Site p.X2161_splice 0.43 TCGA-GN-A266-06 1 186114634 186114634 C T HMCN1 Missense_Mutation p.P4789L 0.28 probably_damaging(0.997) TCGA-GN-A266-06 1 18618479 18618479 G A IGSF21 Silent p.V101V 0.33 TCGA-GN-A266-06 1 186278982 186278982 G A PRG4 Missense_Mutation p.G1160E 0.22 unknown(0) TCGA-GN-A266-06 1 18807949 18807949 C T KLHDC7A Silent p.F158F 0.31 TCGA-GN-A266-06 1 18808905 18808905 G A KLHDC7A Missense_Mutation p.G477E 0.28 deleterious(0.04) benign(0.317) TCGA-GN-A266-06 1 18808916 18808916 G A KLHDC7A Missense_Mutation p.E481K 0.28 deleterious(0) possibly_damaging(0.813) TCGA-GN-A266-06 1 18809104 18809104 C T KLHDC7A Silent p.F543F 0.37 TCGA-GN-A266-06 1 18809748 18809748 G A KLHDC7A Missense_Mutation p.G758D 0.29 deleterious(0) unknown(0) TCGA-GN-A266-06 1 190067341 190067341 A T BRINP3 Missense_Mutation p.L703Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 1 190250722 190250722 C T BRINP3 Missense_Mutation p.G132E 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 190424004 190424004 C T BRINP3 Missense_Mutation p.R6K 0.33 tolerated_low_confidence(0.78) benign(0) TCGA-GN-A266-06 1 19180731 19180731 G A TAS1R2 Silent p.T411T 0.26 TCGA-GN-A266-06 1 192153620 192153620 G A RGS18 Missense_Mutation p.R215Q 0.28 deleterious(0.01) possibly_damaging(0.811) TCGA-GN-A266-06 1 193205437 193205437 T C CDC73 Silent p.G456G 0.35 TCGA-GN-A266-06 1 1956779 1956779 C T GABRD Missense_Mutation p.P63L 0.21 deleterious(0) possibly_damaging(0.745) TCGA-GN-A266-06 1 19597021 19597021 T C AKR7L Missense_Mutation p.T32A 0.42 benign(0.013) TCGA-GN-A266-06 1 196197413 196197413 G A KCNT2 Nonsense_Mutation p.R1117* 0.18 TCGA-GN-A266-06 1 196397372 196397372 C T KCNT2 Missense_Mutation p.E283K 0.30 deleterious(0) probably_damaging(0.927) TCGA-GN-A266-06 1 196434428 196434428 G A KCNT2 Silent p.F211F 0.33 TCGA-GN-A266-06 1 196451491 196451491 C T KCNT2 Silent p.V98V 0.31 TCGA-GN-A266-06 1 196694352 196694352 G A CFH Missense_Mutation p.G600R 0.31 tolerated(1) possibly_damaging(0.779) TCGA-GN-A266-06 1 196706061 196706061 G AA CFH Frame_Shift_Ins p.E841Kfs*26 0.28 TCGA-GN-A266-06 1 196715117 196715117 C T CFH Missense_Mutation p.P1161S 0.23 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 1 196716363 196716363 C T CFH Missense_Mutation p.R1206C 0.36 tolerated(0.09) possibly_damaging(0.556) TCGA-GN-A266-06 1 196758826 196758826 G A CFHR3 Intron 0.35 TCGA-GN-A266-06 1 196759217 196759217 G A CFHR3 Missense_Mutation p.G219D 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-GN-A266-06 1 196762596 196762596 C T CFHR3 Nonsense_Mutation p.Q316* 0.21 TCGA-GN-A266-06 1 196928152 196928152 C T CFHR2 Missense_Mutation p.S252L 0.31 tolerated(0.05) benign(0.092) TCGA-GN-A266-06 1 196952085 196952085 C T CFHR5 Silent p.S43S 0.31 TCGA-GN-A266-06 1 196953159 196953159 G A CFHR5 Missense_Mutation p.D108N 0.29 deleterious(0.02) probably_damaging(0.94) TCGA-GN-A266-06 1 196971768 196971768 G A CFHR5 Missense_Mutation p.R435Q 0.21 tolerated(0.43) benign(0.002) TCGA-GN-A266-06 1 197009650 197009650 A C F13B Splice_Site p.X651_splice 0.37 TCGA-GN-A266-06 1 197326022 197326022 C T CRB1 Silent p.S350S 0.32 TCGA-GN-A266-06 1 197390629 197390629 C T CRB1 Silent p.F557F 0.31 TCGA-GN-A266-06 1 197404044 197404044 C T CRB1 Silent p.S1017S 0.34 TCGA-GN-A266-06 1 197704718 197704718 G A DENND1B Intron 0.30 TCGA-GN-A266-06 1 198498311 198498311 C T ATP6V1G3 Missense_Mutation p.R28K 0.24 deleterious(0.05) possibly_damaging(0.497) TCGA-GN-A266-06 1 198687359 198687359 T C PTPRC Silent p.V529V 0.31 TCGA-GN-A266-06 1 200017821 200017821 G A NR5A2 Missense_Mutation p.E329K 0.27 deleterious(0.01) benign(0.271) TCGA-GN-A266-06 1 200562861 200562861 G A KIF14 Silent p.I862I 0.23 TCGA-GN-A266-06 1 200943941 200943941 C T KIF21B Nonsense_Mutation p.W1572* 0.30 TCGA-GN-A266-06 1 200950134 200950134 G A KIF21B Silent p.I1311I 0.32 TCGA-GN-A266-06 1 200968483 200968483 C T KIF21B Missense_Mutation p.E627K 0.41 tolerated(0.13) benign(0.049) TCGA-GN-A266-06 1 201184950 201184950 C T IGFN1 Silent p.L3093L 0.19 TCGA-GN-A266-06 1 201294248 201294248 C T PKP1 Nonsense_Mutation p.R693* 0.35 TCGA-GN-A266-06 1 201297943 201297943 G A PKP1 Silent p.R741R 0.32 TCGA-GN-A266-06 1 201332529 201332529 C T TNNT2 Silent p.E155E 0.35 TCGA-GN-A266-06 1 201869306 201869306 C T LMOD1 Missense_Mutation p.E279K 0.33 benign(0.002) TCGA-GN-A266-06 1 202123389 202123389 C T PTPN7 Silent p.S282S 0.31 TCGA-GN-A266-06 1 202391754 202391754 C T PPP1R12B Silent p.F143F 0.20 TCGA-GN-A266-06 1 202698951 202698951 G A KDM5B Missense_Mutation p.R1461C 0.34 deleterious(0) possibly_damaging(0.667) TCGA-GN-A266-06 1 202709807 202709807 G A KDM5B Silent p.L1027L 0.34 TCGA-GN-A266-06 1 203017806 203017806 C T PPFIA4 5'Flank 0.35 TCGA-GN-A266-06 1 204228696 204228696 G A PLEKHA6 Missense_Mutation p.P233S 0.30 deleterious(0.01) benign(0) TCGA-GN-A266-06 1 204943918 204943918 A T NFASC Nonsense_Mutation p.K509* 0.09 TCGA-GN-A266-06 1 205034309 205034309 G A CNTN2 Missense_Mutation p.M538I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 1 205042356 205042356 G A CNTN2 Missense_Mutation p.R1002K 0.25 tolerated(0.39) benign(0.004) TCGA-GN-A266-06 1 205273195 205273195 C T NUAK2 Missense_Mutation p.E424K 0.40 tolerated(0.4) benign(0.002) TCGA-GN-A266-06 1 205389633 205389633 T A LEMD1 Missense_Mutation p.K11I 0.38 deleterious(0) possibly_damaging(0.904) TCGA-GN-A266-06 1 205494284 205494284 G A CDK18 Silent p.G169G 0.30 TCGA-GN-A266-06 1 205494285 205494285 A T CDK18 Nonsense_Mutation p.K170* 0.30 TCGA-GN-A266-06 1 205499779 205499779 G A CDK18 Missense_Mutation p.E476K 0.45 tolerated(0.09) benign(0.012) TCGA-GN-A266-06 1 205902072 205902072 C T SLC26A9 Splice_Site p.X89_splice 0.34 TCGA-GN-A266-06 1 205902073 205902073 C T SLC26A9 Missense_Mutation p.G89S 0.34 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 1 206241558 206241558 G A C1orf186 Silent p.I77I 0.31 TCGA-GN-A266-06 1 206243503 206243503 G A C1orf186 5'UTR 0.32 TCGA-GN-A266-06 1 206319208 206319208 C T CTSE Silent p.S111S 0.28 TCGA-GN-A266-06 1 206319209 206319209 C T CTSE Missense_Mutation p.P112S 0.30 tolerated(0.71) benign(0.005) TCGA-GN-A266-06 1 206821851 206821851 C T DYRK3 Silent p.S436S 0.27 TCGA-GN-A266-06 1 207108075 207108075 C T PIGR Silent p.K465K 0.33 TCGA-GN-A266-06 1 207112587 207112587 C T PIGR Missense_Mutation p.E89K 0.28 tolerated(0.09) benign(0.317) TCGA-GN-A266-06 1 207143497 207143497 G A FCAMR 5'UTR 0.24 TCGA-GN-A266-06 1 207300216 207300216 C T C4BPA Missense_Mutation p.P289S 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-GN-A266-06 1 207647209 207647209 T C CR2 Missense_Mutation p.V740A 0.37 tolerated(0.06) benign(0.104) TCGA-GN-A266-06 1 207649738 207649738 G A CR2 Nonsense_Mutation p.W959* 0.39 TCGA-GN-A266-06 1 207782822 207782822 G A CR1 Nonsense_Mutation p.W2028* 0.46 TCGA-GN-A266-06 1 208073331 208073331 G A CD34 Missense_Mutation p.L33F 0.33 tolerated(0.71) benign(0.008) TCGA-GN-A266-06 1 209799120 209799120 C T LAMB3 Missense_Mutation p.D617N 0.40 tolerated(0.18) possibly_damaging(0.694) TCGA-GN-A266-06 1 209955417 209955417 G A TRAF3IP3 Nonsense_Mutation p.W527* 0.31 TCGA-GN-A266-06 1 209961934 209961934 C T IRF6 Missense_Mutation p.R412Q 0.16 tolerated(0.34) possibly_damaging(0.77) TCGA-GN-A266-06 1 210334187 210334187 C T SYT14 Nonsense_Mutation p.Q554* 0.28 TCGA-GN-A266-06 1 210415615 210415615 C T SERTAD4 Missense_Mutation p.S335F 0.33 deleterious(0) possibly_damaging(0.823) TCGA-GN-A266-06 1 210415616 210415616 C T SERTAD4 Silent p.S335S 0.33 TCGA-GN-A266-06 1 210857182 210857182 G A KCNH1 Missense_Mutation p.S804F 0.29 deleterious(0.04) benign(0.07) TCGA-GN-A266-06 1 210948696 210948696 C T KCNH1 Silent p.R702R 0.18 TCGA-GN-A266-06 1 213415276 213415276 C T RPS6KC1 Silent p.F819F 0.33 TCGA-GN-A266-06 1 215808041 215808041 C T USH2A Silent p.L5019L 0.25 TCGA-GN-A266-06 1 215987169 215987169 C T USH2A Silent p.L3216L 0.46 TCGA-GN-A266-06 1 216051165 216051165 A T USH2A Missense_Mutation p.D2872E 0.31 probably_damaging(0.995) TCGA-GN-A266-06 1 216498891 216498891 G A USH2A Missense_Mutation p.S300L 0.15 possibly_damaging(0.72) TCGA-GN-A266-06 1 216692542 216692542 C T ESRRG Missense_Mutation p.E374K 0.15 tolerated(0.19) probably_damaging(0.998) TCGA-GN-A266-06 1 217955562 217955562 C T SPATA17 Missense_Mutation p.P257L 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A266-06 1 220091654 220091654 C T SLC30A10 Missense_Mutation p.E301K 0.29 deleterious(0) probably_damaging(0.928) TCGA-GN-A266-06 1 220191809 220191809 G A EPRS Silent p.I492I 0.22 TCGA-GN-A266-06 1 220386237 220386237 G A RAB3GAP2 Silent p.V126V 0.30 TCGA-GN-A266-06 1 220752852 220752852 A T MARK1 Missense_Mutation p.N70Y 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 220777408 220777408 G A MARK1 Splice_Site p.X142_splice 0.20 TCGA-GN-A266-06 1 220808746 220808746 G A MARK1 Missense_Mutation p.G384E 0.12 tolerated(0.24) benign(0.04) TCGA-GN-A266-06 1 220824045 220824045 G A MARK1 Silent p.Q518Q 0.35 TCGA-GN-A266-06 1 220935159 220935159 C T MARC2 Silent p.F202F 0.20 TCGA-GN-A266-06 1 22150012 22150012 G A LDLRAD2 3'UTR 0.21 TCGA-GN-A266-06 1 222715384 222715384 G A HHIPL2 Missense_Mutation p.P363L 0.33 deleterious(0.04) benign(0.262) TCGA-GN-A266-06 1 222721128 222721128 C T HHIPL2 Missense_Mutation p.E87K 0.36 tolerated(0.16) benign(0.018) TCGA-GN-A266-06 1 222801984 222801984 C T MIA3 Silent p.S474S 0.31 TCGA-GN-A266-06 1 223408284 223408284 A T SUSD4 Intron 0.30 TCGA-GN-A266-06 1 224482072 224482072 C T NVL Missense_Mutation p.G408R 0.13 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 1 225700644 225700644 G A ENAH Silent p.G431G 0.30 TCGA-GN-A266-06 1 226075716 226075716 G A RP4-559A3.7 Missense_Mutation p.P198S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 1 226183025 226183025 G A SDE2 Silent p.D60D 0.14 TCGA-GN-A266-06 1 227618340 227618340 G A CTD-2090I13.1 RNA 0.14 TCGA-GN-A266-06 1 228433155 228433155 G A OBSCN Missense_Mutation p.E1267K 0.11 benign(0.021) TCGA-GN-A266-06 1 228529196 228529196 G A OBSCN Nonsense_Mutation p.W6929* 0.36 TCGA-GN-A266-06 1 228879409 228879409 G A RHOU Silent p.K233K 0.38 TCGA-GN-A266-06 1 22902951 22902951 G A EPHA8 Missense_Mutation p.G134E 0.31 tolerated(0.22) probably_damaging(1) TCGA-GN-A266-06 1 22913001 22913001 C T EPHA8 Silent p.A284A 0.30 TCGA-GN-A266-06 1 22973756 22973756 G A C1QC Missense_Mutation p.G73E 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A266-06 1 230807342 230807342 C T COG2 Silent p.H285H 0.34 TCGA-GN-A266-06 1 23111267 23111267 C T EPHB2 Missense_Mutation p.S170F 0.24 deleterious(0) probably_damaging(0.955) TCGA-GN-A266-06 1 23191429 23191429 G A EPHB2 Missense_Mutation p.E343K 0.29 deleterious(0.01) possibly_damaging(0.523) TCGA-GN-A266-06 1 233807017 233807017 G A KCNK1 Missense_Mutation p.C251Y 0.34 deleterious(0) benign(0.34) TCGA-GN-A266-06 1 2340004 2340004 C G PEX10 Missense_Mutation p.A163P 0.10 deleterious(0.01) possibly_damaging(0.495) TCGA-GN-A266-06 1 234445036 234445036 C T SLC35F3 Silent p.I266I 0.29 TCGA-GN-A266-06 1 234455841 234455841 C T SLC35F3 Intron 0.32 TCGA-GN-A266-06 1 23520171 23520171 G A HTR1D Missense_Mutation p.A181V 0.29 tolerated(0.15) benign(0.059) TCGA-GN-A266-06 1 23520476 23520476 G A HTR1D Silent p.S79S 0.30 TCGA-GN-A266-06 1 235972605 235972605 C T LYST Missense_Mutation p.E505K 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-GN-A266-06 1 236918447 236918447 C T ACTN2 Silent p.L701L 0.34 TCGA-GN-A266-06 1 237494187 237494187 C T RYR2 Missense_Mutation p.P60S 0.22 benign(0.339) TCGA-GN-A266-06 1 237660052 237660052 G A RYR2 Missense_Mutation p.G735S 0.15 probably_damaging(0.999) TCGA-GN-A266-06 1 237791306 237791306 C T RYR2 Silent p.S2122S 0.44 TCGA-GN-A266-06 1 237796931 237796931 C T RYR2 Silent p.F2203F 0.31 TCGA-GN-A266-06 1 237843767 237843767 T A RYR2 Silent p.P2969P 0.38 TCGA-GN-A266-06 1 237875071 237875071 C T RYR2 Silent p.F3419F 0.25 TCGA-GN-A266-06 1 237955551 237955551 C T RYR2 Silent p.P4570P 0.26 TCGA-GN-A266-06 1 238048545 238048545 G A ZP4 Missense_Mutation p.P411S 0.24 deleterious(0) probably_damaging(0.967) TCGA-GN-A266-06 1 240072190 240072190 G A CHRM3 Missense_Mutation p.R480K 0.23 tolerated(0.06) benign(0.124) TCGA-GN-A266-06 1 24018301 24018301 C T RPL11 5'UTR 0.32 TCGA-GN-A266-06 1 240370204 240370204 C T FMN2 Missense_Mutation p.P698S 0.16 unknown(0) TCGA-GN-A266-06 1 240601449 240601449 G A FMN2 Missense_Mutation p.E1667K 0.28 possibly_damaging(0.505) TCGA-GN-A266-06 1 240939383 240939383 C T RGS7 3'UTR 0.50 TCGA-GN-A266-06 1 240939511 240939511 C T RGS7 Silent p.G472G 0.09 TCGA-GN-A266-06 1 241519024 241519024 G A RGS7 Missense_Mutation p.S18L 0.35 tolerated(0.07) possibly_damaging(0.806) TCGA-GN-A266-06 1 241714307 241714307 G A KMO Missense_Mutation p.G92E 0.16 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 2421228 2421228 G A PLCH2 Silent p.E452E 0.37 TCGA-GN-A266-06 1 247614805 247614805 G T OR2B11 Silent p.S160S 0.25 TCGA-GN-A266-06 1 247695031 247695031 G A OR2C3 Silent p.L261L 0.33 TCGA-GN-A266-06 1 247712513 247712513 G A GCSAML Missense_Mutation p.R7Q 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-GN-A266-06 1 247769241 247769241 G A OR2G3 Missense_Mutation p.M118I 0.13 deleterious(0) possibly_damaging(0.611) TCGA-GN-A266-06 1 247875181 247875181 G A OR6F1 Missense_Mutation p.R293C 0.12 deleterious(0.01) benign(0.181) TCGA-GN-A266-06 1 247902152 247902152 C T OR14K1 Missense_Mutation p.S79F 0.33 tolerated(0.13) benign(0.012) TCGA-GN-A266-06 1 247920823 247920823 C T OR1C1 Missense_Mutation p.D296N 0.40 deleterious(0.03) possibly_damaging(0.522) TCGA-GN-A266-06 1 248084319 248084319 C T OR2T8 5'Flank 0.12 TCGA-GN-A266-06 1 248084830 248084830 G A OR2T8 Missense_Mutation p.E171K 0.13 tolerated(0.13) benign(0.344) TCGA-GN-A266-06 1 248112537 248112537 C T OR2L8 Silent p.C126C 0.25 TCGA-GN-A266-06 1 248129370 248129370 G A OR2AK2 Missense_Mutation p.G246E 0.33 tolerated(0.13) benign(0.327) TCGA-GN-A266-06 1 248308994 248308994 C T OR2M5 Missense_Mutation p.P182L 0.28 tolerated(0.05) possibly_damaging(0.772) TCGA-GN-A266-06 1 248343415 248343415 C T OR2M2 Missense_Mutation p.S43F 0.34 tolerated(0.08) benign(0.013) TCGA-GN-A266-06 1 248402372 248402372 C T OR2M4 Missense_Mutation p.L48F 0.34 deleterious(0.01) benign(0.157) TCGA-GN-A266-06 1 248403085 248403085 G A OR2M4 Silent p.L285L 0.41 TCGA-GN-A266-06 1 248487463 248487463 C T OR2M7 Missense_Mutation p.M136I 0.22 deleterious(0.01) benign(0.178) TCGA-GN-A266-06 1 248512081 248512081 C T OR14C36 Missense_Mutation p.P2L 0.19 tolerated(0.2) benign(0.003) TCGA-GN-A266-06 1 248524930 248524930 C T OR2T4 Silent p.F16F 0.32 TCGA-GN-A266-06 1 248551306 248551306 C T OR2T6 Missense_Mutation p.P133S 0.25 tolerated(0.15) benign(0.126) TCGA-GN-A266-06 1 248551788 248551788 G A OR2T6 Silent p.R293R 0.31 TCGA-GN-A266-06 1 248569979 248569979 C T OR2T1 Silent p.F228F 0.22 TCGA-GN-A266-06 1 248616205 248616205 T C OR2T2 Missense_Mutation p.F36S 0.18 deleterious(0.01) possibly_damaging(0.601) TCGA-GN-A266-06 1 248616379 248616379 C T OR2T2 Missense_Mutation p.S94F 0.15 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 1 248616616 248616616 G A OR2T2 Missense_Mutation p.R173Q 0.15 tolerated(0.12) possibly_damaging(0.875) TCGA-GN-A266-06 1 248616751 248616751 C T OR2T2 Missense_Mutation p.S218F 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 248637008 248637008 C T OR2T3 Silent p.L119L 0.24 TCGA-GN-A266-06 1 248685266 248685266 T C OR2G6 Silent p.L107L 0.26 TCGA-GN-A266-06 1 248737590 248737590 C T OR2T34 Missense_Mutation p.G157R 0.26 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 1 248737702 248737702 G A OR2T34 Silent p.L119L 0.25 TCGA-GN-A266-06 1 248756344 248756344 G A OR2T10 Silent p.S242S 0.18 TCGA-GN-A266-06 1 248790397 248790397 G A OR2T11 Silent p.L11L 0.38 TCGA-GN-A266-06 1 2523021 2523021 C T MMEL1 Missense_Mutation p.D739N 0.30 deleterious(0) probably_damaging(0.971) TCGA-GN-A266-06 1 25712324 25712324 G A RHCE Silent p.N317N 0.32 TCGA-GN-A266-06 1 25784985 25784985 C T TMEM57 Silent p.Y252Y 0.40 TCGA-GN-A266-06 1 25784986 25784986 C T TMEM57 Nonsense_Mutation p.R253* 0.40 TCGA-GN-A266-06 1 26524783 26524783 T C CATSPER4 Missense_Mutation p.S229P 0.32 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 1 26526468 26526468 C T CATSPER4 Silent p.F302F 0.34 TCGA-GN-A266-06 1 27278660 27278660 G A C1orf172 Missense_Mutation p.S71F 0.21 tolerated(0.09) benign(0.115) TCGA-GN-A266-06 1 27436209 27436209 G A SLC9A1 Silent p.I291I 0.32 TCGA-GN-A266-06 1 27689240 27689240 G A MAP3K6 Missense_Mutation p.R383C 0.26 deleterious(0.01) possibly_damaging(0.708) TCGA-GN-A266-06 1 28476731 28476731 G A PTAFR Missense_Mutation p.H268Y 0.34 deleterious(0.01) probably_damaging(0.926) TCGA-GN-A266-06 1 28785613 28785613 A C PHACTR4 Missense_Mutation p.T22P 0.16 tolerated(1) benign(0.001) TCGA-GN-A266-06 1 28785614 28785614 C T PHACTR4 Missense_Mutation p.T22I 0.16 deleterious(0.01) benign(0.002) TCGA-GN-A266-06 1 2938890 2938890 G A ACTRT2 Missense_Mutation p.D214N 0.27 tolerated(0.16) benign(0.02) TCGA-GN-A266-06 1 29606570 29606570 C T PTPRU Silent p.A595A 0.32 TCGA-GN-A266-06 1 3102925 3102925 C T PRDM16 Missense_Mutation p.P92S 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A266-06 1 31350045 31350045 G A SDC3 Intron 0.35 TCGA-GN-A266-06 1 32203337 32203337 G A BAI2 Missense_Mutation p.S931F 0.25 deleterious(0.04) possibly_damaging(0.588) TCGA-GN-A266-06 1 32678136 32678136 G A DCDC2B Silent p.L191L 0.42 TCGA-GN-A266-06 1 32739964 32739964 G A LCK Missense_Mutation p.D12N 0.38 tolerated_low_confidence(0.13) benign(0.33) TCGA-GN-A266-06 1 33058852 33058852 T C ZBTB8A Missense_Mutation p.M107T 0.30 probably_damaging(0.999) TCGA-GN-A266-06 1 33321617 33321617 T G S100PBP Missense_Mutation p.L402R 0.30 deleterious(0) possibly_damaging(0.897) TCGA-GN-A266-06 1 33404090 33404090 G A RNF19B Silent p.P551P 0.15 TCGA-GN-A266-06 1 3347451 3347451 C T PRDM16 Silent p.I1100I 0.33 TCGA-GN-A266-06 1 3395096 3395096 C A ARHGEF16 Silent p.S578S 0.39 TCGA-GN-A266-06 1 34008417 34008417 G A CSMD2 Silent p.I2916I 0.40 TCGA-GN-A266-06 1 34312485 34312485 C T CSMD2 Missense_Mutation p.V305I 0.24 deleterious(0.01) benign(0.303) TCGA-GN-A266-06 1 34329737 34329737 A G HMGB4 5'UTR 0.27 TCGA-GN-A266-06 1 34330148 34330148 C T HMGB4 Missense_Mutation p.S119L 0.42 deleterious(0.02) benign(0.134) TCGA-GN-A266-06 1 34401488 34401488 G A CSMD2 Silent p.F155F 0.32 TCGA-GN-A266-06 1 34662971 34662971 G A C1orf94 Missense_Mutation p.E156K 0.27 tolerated(0.58) benign(0.004) TCGA-GN-A266-06 1 35223146 35223146 C T GJB5 Missense_Mutation p.S72F 0.11 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 1 35223590 35223590 G A GJB5 Missense_Mutation p.R220K 0.15 tolerated(0.21) benign(0.005) TCGA-GN-A266-06 1 36379862 36379862 C A AGO1 Missense_Mutation p.P607H 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 1 36645561 36645561 G A MAP7D1 Missense_Mutation p.G803E 0.35 unknown(0) TCGA-GN-A266-06 1 3673449 3673449 G A CCDC27 Missense_Mutation p.E236K 0.43 deleterious(0) benign(0.007) TCGA-GN-A266-06 1 37270698 37270698 G A GRIK3 Nonsense_Mutation p.Q819* 0.19 TCGA-GN-A266-06 1 37285336 37285336 C T GRIK3 Splice_Site p.X625_splice 0.26 TCGA-GN-A266-06 1 37337848 37337848 G A GRIK3 Missense_Mutation p.R225W 0.35 deleterious(0.01) possibly_damaging(0.898) TCGA-GN-A266-06 1 38005955 38005955 G A SNIP1 Silent p.V243V 0.30 TCGA-GN-A266-06 1 38039990 38039990 G A GNL2 Missense_Mutation p.P457L 0.12 deleterious(0) probably_damaging(0.946) TCGA-GN-A266-06 1 38185154 38185154 G A EPHA10 Silent p.I896I 0.41 TCGA-GN-A266-06 1 39799709 39799709 C T MACF1 Intron 0.33 TCGA-GN-A266-06 1 39852864 39852864 C T MACF1 Missense_Mutation p.R2722C 0.32 probably_damaging(0.992) TCGA-GN-A266-06 1 39878858 39878858 C T KIAA0754 Missense_Mutation p.P838L 0.27 unknown(0) TCGA-GN-A266-06 1 40097243 40097243 C T HEYL Silent p.E52E 0.39 TCGA-GN-A266-06 1 40980261 40980261 A G EXO5 Silent p.S15S 0.28 TCGA-GN-A266-06 1 41283836 41283836 G A KCNQ4 Missense_Mutation p.E136K 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 41303367 41303367 G A KCNQ4 Silent p.G592G 0.18 TCGA-GN-A266-06 1 41978682 41978682 C T HIVEP3 Silent p.R2070R 0.52 TCGA-GN-A266-06 1 42047200 42047200 G A HIVEP3 Missense_Mutation p.S1090F 0.09 benign(0.426) TCGA-GN-A266-06 1 42621289 42621289 C T GUCA2B 3'UTR 0.36 TCGA-GN-A266-06 1 42880390 42880390 G A RIMKLA Silent p.Q307Q 0.41 TCGA-GN-A266-06 1 42905641 42905641 G A ZMYND12 Silent p.V160V 0.16 TCGA-GN-A266-06 1 43273058 43273058 G A CCDC23 3'UTR 0.31 TCGA-GN-A266-06 1 43812583 43812583 G A MPL Missense_Mutation p.G429E 0.34 tolerated(0.38) possibly_damaging(0.688) TCGA-GN-A266-06 1 43881724 43881724 C T SZT2 Missense_Mutation p.R242C 0.21 deleterious(0) probably_damaging(0.978) TCGA-GN-A266-06 1 43886602 43886602 C T SZT2 Missense_Mutation p.R482C 0.28 deleterious(0.03) benign(0.094) TCGA-GN-A266-06 1 43890484 43890484 C T SZT2 Missense_Mutation p.A834V 0.28 deleterious(0) benign(0.024) TCGA-GN-A266-06 1 44069540 44069542 AGG - PTPRF In_Frame_Del p.E907del 0.25 TCGA-GN-A266-06 1 44072119 44072119 C T PTPRF Missense_Mutation p.P1231L 0.26 tolerated(0.59) benign(0.001) TCGA-GN-A266-06 1 44083233 44083233 A T PTPRF Missense_Mutation p.I1397F 0.32 deleterious(0.01) possibly_damaging(0.544) TCGA-GN-A266-06 1 44083235 44083235 C T PTPRF Silent p.I1397I 0.32 TCGA-GN-A266-06 1 44364959 44364959 C T ST3GAL3 Intron 0.38 TCGA-GN-A266-06 1 44468196 44468196 G A SLC6A9 Silent p.I355I 0.20 TCGA-GN-A266-06 1 44595255 44595255 G A KLF17 Silent p.A104A 0.41 TCGA-GN-A266-06 1 44595815 44595815 G A KLF17 Missense_Mutation p.G291E 0.12 tolerated(0.12) benign(0.308) TCGA-GN-A266-06 1 45251749 45251749 C T BEST4 Silent p.L211L 0.31 TCGA-GN-A266-06 1 46032719 46032719 G A AKR1A1 Intron 0.32 TCGA-GN-A266-06 1 46474017 46474017 C T MAST2 Missense_Mutation p.H318Y 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-GN-A266-06 1 46872007 46872007 C T FAAH Silent p.D306D 0.32 TCGA-GN-A266-06 1 47080695 47080695 A G MOB3C Silent p.L18L 0.34 TCGA-GN-A266-06 1 47279266 47279266 G A CYP4B1 Missense_Mutation p.G203D 0.25 tolerated(0.43) benign(0.019) TCGA-GN-A266-06 1 47284546 47284546 C T CYP4B1 3'UTR 0.28 TCGA-GN-A266-06 1 47501741 47501741 C T CYP4X1 Missense_Mutation p.H225Y 0.29 tolerated(1) benign(0.002) TCGA-GN-A266-06 1 47603166 47603166 C T CYP4A22 Silent p.V3V 0.27 TCGA-GN-A266-06 1 47610592 47610592 G A CYP4A22 Missense_Mutation p.R391K 0.36 deleterious(0.01) benign(0.247) TCGA-GN-A266-06 1 51929354 51929354 G A EPS15 Silent p.I164I 0.18 TCGA-GN-A266-06 1 53072487 53072487 C T GPX7 Silent p.G90G 0.37 TCGA-GN-A266-06 1 53282222 53282222 C T ZYG11B Silent p.F655F 0.32 TCGA-GN-A266-06 1 53722919 53722919 G A LRP8 Silent p.S809S 0.23 TCGA-GN-A266-06 1 54509162 54509162 G A TMEM59 Missense_Mutation p.P143S 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A266-06 1 54605171 54605171 G A CDCP2 3'UTR 0.40 TCGA-GN-A266-06 1 55174728 55174728 C T MROH7 Missense_Mutation p.R1237C 0.27 tolerated(0.2) benign(0.006) TCGA-GN-A266-06 1 55266910 55266910 C T TTC22 5'UTR 0.40 TCGA-GN-A266-06 1 55470745 55470745 G A BSND Silent p.K76K 0.10 TCGA-GN-A266-06 1 55512300 55512300 G A PCSK9 Silent p.A168A 0.32 TCGA-GN-A266-06 1 55521827 55521827 G A PCSK9 Missense_Mutation p.D321N 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-GN-A266-06 1 55547002 55547002 C T USP24 Silent p.R2357R 0.14 TCGA-GN-A266-06 1 55547003 55547003 C T USP24 Missense_Mutation p.R2357K 0.13 tolerated(0.08) benign(0.014) TCGA-GN-A266-06 1 57169990 57169990 A T PRKAA2 Nonsense_Mutation p.K379* 0.37 TCGA-GN-A266-06 1 57373655 57373655 G A C8A Missense_Mutation p.E417K 0.30 tolerated(0.19) benign(0.052) TCGA-GN-A266-06 1 57399055 57399055 G A C8B Missense_Mutation p.S502F 0.33 deleterious(0) possibly_damaging(0.851) TCGA-GN-A266-06 1 5923956 5923956 G A NPHP4 Silent p.S1378S 0.21 TCGA-GN-A266-06 1 5923958 5923958 A T NPHP4 Missense_Mutation p.S1378T 0.20 tolerated(0.34) benign(0.034) TCGA-GN-A266-06 1 60520946 60520946 T C C1orf87 Missense_Mutation p.N91S 0.34 tolerated(0.38) benign(0.003) TCGA-GN-A266-06 1 61824904 61824904 G A NFIA Missense_Mutation p.G347R 0.22 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 1 6184100 6184100 C T CHD5 Missense_Mutation p.G1536E 0.32 tolerated(0.3) benign(0.002) TCGA-GN-A266-06 1 6191793 6191793 C T CHD5 Missense_Mutation p.D1054N 0.34 deleterious(0.03) probably_damaging(0.992) TCGA-GN-A266-06 1 6209413 6209413 C T CHD5 Missense_Mutation p.G352S 0.41 deleterious(0.02) probably_damaging(0.951) TCGA-GN-A266-06 1 62237153 62237153 C T INADL Missense_Mutation p.P192L 0.20 deleterious(0.04) possibly_damaging(0.698) TCGA-GN-A266-06 1 62253636 62253636 C T INADL Missense_Mutation p.P354S 0.26 tolerated(0.35) benign(0.004) TCGA-GN-A266-06 1 62340985 62340985 G A INADL Missense_Mutation p.R969K 0.23 tolerated(0.89) benign(0.009) TCGA-GN-A266-06 1 62349956 62349956 C T INADL Missense_Mutation p.P1003S 0.27 deleterious(0.01) benign(0.115) TCGA-GN-A266-06 1 62456008 62456008 G A INADL Missense_Mutation p.R1280Q 0.29 deleterious(0) probably_damaging(0.98) TCGA-GN-A266-06 1 62550265 62550265 C T INADL Missense_Mutation p.S1441F 0.22 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 1 62672691 62672691 G A L1TD1 Missense_Mutation p.E131K 0.31 tolerated(0.14) unknown(0) TCGA-GN-A266-06 1 62739144 62739144 C T KANK4 Silent p.G544G 0.37 TCGA-GN-A266-06 1 62739545 62739545 C T KANK4 Missense_Mutation p.D411N 0.21 deleterious(0.01) benign(0.19) TCGA-GN-A266-06 1 62747241 62747241 G A KANK4 5'UTR 0.31 TCGA-GN-A266-06 1 63024829 63024829 G A DOCK7 Silent p.V754V 0.30 TCGA-GN-A266-06 1 64624850 64624850 C T ROR1 Missense_Mutation p.S454L 0.35 deleterious(0.04) benign(0.008) TCGA-GN-A266-06 1 64643822 64643822 G T ROR1 Nonsense_Mutation p.E700* 0.26 TCGA-GN-A266-06 1 65119465 65119465 T A CACHD1 Missense_Mutation p.L471H 0.29 deleterious(0) possibly_damaging(0.827) TCGA-GN-A266-06 1 65130323 65130323 C T CACHD1 Missense_Mutation p.S695F 0.11 deleterious(0) possibly_damaging(0.735) TCGA-GN-A266-06 1 6528454 6528454 G A PLEKHG5 Silent p.S893S 0.38 TCGA-GN-A266-06 1 66088588 66088588 G A LEPR Splice_Site p.X866_splice 0.16 TCGA-GN-A266-06 1 6634974 6634974 G C TAS1R1 Missense_Mutation p.R261P 0.19 tolerated(0.14) possibly_damaging(0.463) TCGA-GN-A266-06 1 66384349 66384349 G A PDE4B Missense_Mutation p.D38N 0.31 deleterious_low_confidence(0.02) benign(0.114) TCGA-GN-A266-06 1 67243089 67243089 T C TCTEX1D1 Silent p.N164N 0.34 TCGA-GN-A266-06 1 67299299 67299299 G A WDR78 Missense_Mutation p.A661V 0.20 deleterious(0.04) possibly_damaging(0.677) TCGA-GN-A266-06 1 68512467 68512467 C T DIRAS3 Missense_Mutation p.E172K 0.33 tolerated(0.37) benign(0.115) TCGA-GN-A266-06 1 70478773 70478773 G A LRRC7 Splice_Site p.X379_splice 0.38 TCGA-GN-A266-06 1 70488881 70488881 G A LRRC7 Missense_Mutation p.D502N 0.30 tolerated(0.29) benign(0.062) TCGA-GN-A266-06 1 70493873 70493873 G A LRRC7 Missense_Mutation p.R567Q 0.28 deleterious(0.04) probably_damaging(0.99) TCGA-GN-A266-06 1 70644645 70644645 G A LRRC40 Silent p.L231L 0.24 TCGA-GN-A266-06 1 74575135 74575135 C T LRRIQ3 Silent p.K270K 0.49 TCGA-GN-A266-06 1 75039122 75039122 C T C1orf173 Missense_Mutation p.E758K 0.40 tolerated(0.18) benign(0.058) TCGA-GN-A266-06 1 75065462 75065462 G A C1orf173 Missense_Mutation p.S548L 0.39 tolerated(0.11) benign(0.045) TCGA-GN-A266-06 1 75072435 75072435 C T C1orf173 Missense_Mutation p.E447K 0.33 tolerated(0.31) benign(0.005) TCGA-GN-A266-06 1 75688085 75688085 C T SLC44A5 Missense_Mutation p.R349Q 0.26 deleterious(0.03) benign(0.202) TCGA-GN-A266-06 1 75708618 75708618 A C SLC44A5 Missense_Mutation p.W142G 0.08 deleterious(0.03) possibly_damaging(0.839) TCGA-GN-A266-06 1 76877777 76877777 C T ST6GALNAC3 Nonsense_Mutation p.R100* 0.41 TCGA-GN-A266-06 1 7724669 7724669 G A CAMTA1 Missense_Mutation p.G688R 0.34 tolerated_low_confidence(0.16) benign(0.432) TCGA-GN-A266-06 1 77528893 77528893 G A ST6GALNAC5 3'UTR 0.62 TCGA-GN-A266-06 1 78272765 78272765 C T FAM73A Missense_Mutation p.P206S 0.31 deleterious(0.03) probably_damaging(1) TCGA-GN-A266-06 1 78959150 78959150 G A PTGFR Missense_Mutation p.R241K 0.38 tolerated(0.58) possibly_damaging(0.817) TCGA-GN-A266-06 1 79002314 79002314 C T PTGFR Missense_Mutation p.S341F 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 79129455 79129455 C T IFI44 Silent p.L432L 0.21 TCGA-GN-A266-06 1 79358832 79358832 G A ELTD1 Missense_Mutation p.R598C 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A266-06 1 82418681 82418681 G A LPHN2 Intron 0.31 TCGA-GN-A266-06 1 82434986 82434986 G A LPHN2 Missense_Mutation p.R866Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 82436123 82436123 G A LPHN2 Silent p.R936R 0.30 TCGA-GN-A266-06 1 82456238 82456238 C T LPHN2 Silent p.I1207I 0.32 TCGA-GN-A266-06 1 8384558 8384558 C T SLC45A1 Missense_Mutation p.R57C 0.24 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-GN-A266-06 1 8395530 8395530 G A SLC45A1 Missense_Mutation p.E493K 0.30 tolerated(0.08) possibly_damaging(0.496) TCGA-GN-A266-06 1 84376910 84376910 C T TTLL7 Missense_Mutation p.R575K 0.27 tolerated(0.8) benign(0) TCGA-GN-A266-06 1 84880417 84880417 C T DNASE2B Missense_Mutation p.R318C 0.26 deleterious(0) possibly_damaging(0.773) TCGA-GN-A266-06 1 85484831 85484831 G A MCOLN3 Missense_Mutation p.S546F 0.13 deleterious(0.04) benign(0.013) TCGA-GN-A266-06 1 85824519 85824519 C T DDAH1 Missense_Mutation p.M105I 0.24 tolerated(0.64) benign(0.068) TCGA-GN-A266-06 1 86210408 86210408 C T COL24A1 Missense_Mutation p.R1538Q 0.35 deleterious(0.02) possibly_damaging(0.683) TCGA-GN-A266-06 1 86814575 86814575 G A ODF2L 3'UTR 0.45 TCGA-GN-A266-06 1 86898095 86898095 C T CLCA2 Missense_Mutation p.P210S 0.28 tolerated(1) benign(0.032) TCGA-GN-A266-06 1 86921097 86921097 T C CLCA2 Silent p.L907L 0.35 TCGA-GN-A266-06 1 86957012 86957012 C T CLCA1 Silent p.A474A 0.31 TCGA-GN-A266-06 1 87040246 87040246 G A CLCA4 Silent p.L497L 0.26 TCGA-GN-A266-06 1 87190087 87190087 C T SH3GLB1 Missense_Mutation p.S190L 0.26 tolerated(0.13) benign(0.001) TCGA-GN-A266-06 1 89449212 89449212 G A RBMXL1 Missense_Mutation p.P100S 0.32 tolerated(0.97) benign(0.011) TCGA-GN-A266-06 1 89520430 89520430 T G GBP1 Missense_Mutation p.K534Q 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-GN-A266-06 1 89520832 89520832 C T GBP1 Missense_Mutation p.D479N 0.19 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 89582838 89582838 G A GBP2 Silent p.V235V 0.26 TCGA-GN-A266-06 1 89729432 89729432 C T GBP5 Missense_Mutation p.R450Q 0.36 deleterious(0.03) benign(0.442) TCGA-GN-A266-06 1 90178523 90178523 C T LRRC8C Missense_Mutation p.L132F 0.14 tolerated(0.09) possibly_damaging(0.81) TCGA-GN-A266-06 1 90399360 90399360 G A LRRC8D Missense_Mutation p.G245R 0.33 tolerated(0.38) possibly_damaging(0.545) TCGA-GN-A266-06 1 90484280 90484280 C T ZNF326 Missense_Mutation p.R371C 0.37 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 1 93586103 93586103 C T MTF2 Intron 0.17 TCGA-GN-A266-06 1 94508412 94508412 C T ABCA4 Missense_Mutation p.G1078E 0.31 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 1 94564427 94564427 A T ABCA4 Missense_Mutation p.S231T 0.24 tolerated(0.13) benign(0.044) TCGA-GN-A266-06 1 94997929 94997929 C T F3 Silent p.K233K 0.32 TCGA-GN-A266-06 1 98348842 98348842 C T DPYD Missense_Mutation p.R43K 0.27 tolerated(0.1) probably_damaging(0.982) TCGA-GN-A266-06 1 99762394 99762394 C T LPPR4 Missense_Mutation p.S170F 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 1 99767441 99767441 T C LPPR4 Silent p.I318I 0.32 TCGA-GN-A266-06 20 13280108 13280108 G A ISM1 3'UTR 0.23 TCGA-GN-A266-06 20 1460520 1460520 G A SIRPB2 Silent p.F92F 0.53 TCGA-GN-A266-06 20 1552369 1552369 G A SIRPB1 Nonsense_Mutation p.R250* 0.15 TCGA-GN-A266-06 20 1629810 1629810 G A SIRPG Silent p.I106I 0.10 TCGA-GN-A266-06 20 1629899 1629899 T A SIRPG Missense_Mutation p.I77F 0.18 deleterious(0.01) possibly_damaging(0.715) TCGA-GN-A266-06 20 1630007 1630007 G A SIRPG Silent p.L41L 0.23 TCGA-GN-A266-06 20 17434578 17434578 G A PCSK2 Silent p.R359R 0.27 TCGA-GN-A266-06 20 17716333 17716333 C T BANF2 Silent p.F57F 0.19 TCGA-GN-A266-06 20 18005591 18005591 G A OVOL2 Missense_Mutation p.R173C 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 18295808 18295808 C T ZNF133 Missense_Mutation p.P104S 0.20 tolerated(0.36) possibly_damaging(0.56) TCGA-GN-A266-06 20 19665909 19665909 G A SLC24A3 Missense_Mutation p.E410K 0.35 tolerated(0.43) benign(0.138) TCGA-GN-A266-06 20 19701833 19701833 G A SLC24A3 3'UTR 0.47 TCGA-GN-A266-06 20 19956095 19956095 C T RIN2 Missense_Mutation p.P525S 0.21 tolerated(0.23) probably_damaging(0.996) TCGA-GN-A266-06 20 20144724 20144724 G A C20orf26 Missense_Mutation p.G353R 0.31 tolerated(0.54) benign(0.002) TCGA-GN-A266-06 20 20571850 20571850 G A RALGAPA2 Missense_Mutation p.P771L 0.19 tolerated(0.45) benign(0.001) TCGA-GN-A266-06 20 21362664 21362664 C T XRN2 Missense_Mutation p.P873S 0.20 tolerated_low_confidence(0.35) benign(0.002) TCGA-GN-A266-06 20 21494126 21494126 A G NKX2-2 Missense_Mutation p.L61P 0.28 tolerated_low_confidence(0.12) benign(0.347) TCGA-GN-A266-06 20 23064515 23064515 C T CD93 3'UTR 0.22 TCGA-GN-A266-06 20 23064991 23064991 C T CD93 Silent p.R613R 0.24 TCGA-GN-A266-06 20 23065742 23065742 C T CD93 Missense_Mutation p.G363E 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 2312850 2312850 G A TGM3 Silent p.T512T 0.43 TCGA-GN-A266-06 20 2321170 2321170 C T TGM3 Silent p.F675F 0.28 TCGA-GN-A266-06 20 23432486 23432486 C T CST11 Silent p.T100T 0.22 TCGA-GN-A266-06 20 23433381 23433381 G A CST11 Missense_Mutation p.P23L 0.37 deleterious(0.03) benign(0) TCGA-GN-A266-06 20 2381057 2381057 G A TGM6 Missense_Mutation p.R319Q 0.43 deleterious(0.05) possibly_damaging(0.882) TCGA-GN-A266-06 20 24994251 24994251 G A ACSS1 Silent p.S500S 0.16 TCGA-GN-A266-06 20 25460820 25460820 G A NINL Missense_Mutation p.L632F 0.20 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 20 25460821 25460821 G A NINL Silent p.D631D 0.18 TCGA-GN-A266-06 20 2795880 2795880 C T C20orf141 Missense_Mutation p.P17L 0.31 tolerated_low_confidence(0.25) possibly_damaging(0.851) TCGA-GN-A266-06 20 2816919 2816919 G A PCED1A Nonsense_Mutation p.Q295* 0.28 TCGA-GN-A266-06 20 2816920 2816920 G A PCED1A Silent p.F294F 0.28 TCGA-GN-A266-06 20 29845491 29845491 C T DEFB115 Missense_Mutation p.L9F 0.25 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-GN-A266-06 20 29976797 29976797 G A DEFB119 3'UTR 0.25 TCGA-GN-A266-06 20 30064427 30064427 C T REM1 Missense_Mutation p.S60L 0.29 tolerated(0.18) benign(0.009) TCGA-GN-A266-06 20 30408243 30408243 C T MYLK2 Missense_Mutation p.P123S 0.39 tolerated_low_confidence(0.11) benign(0.015) TCGA-GN-A266-06 20 30419644 30419644 C T MYLK2 Silent p.I521I 0.38 TCGA-GN-A266-06 20 30496439 30496439 G A TTLL9 Silent p.R84R 0.16 TCGA-GN-A266-06 20 30584564 30584564 G A XKR7 Silent p.T348T 0.42 TCGA-GN-A266-06 20 30672286 30672286 C T HCK Missense_Mutation p.R259W 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 30804488 30804488 C T POFUT1 Missense_Mutation p.S169F 0.29 tolerated(0.2) possibly_damaging(0.783) TCGA-GN-A266-06 20 31607532 31607532 C T BPIFB2 Silent p.F352F 0.40 TCGA-GN-A266-06 20 31688232 31688232 G A BPIFB4 Missense_Mutation p.D524N 0.18 tolerated(0.25) benign(0.033) TCGA-GN-A266-06 20 31761912 31761912 G A BPIFA2 Silent p.L110L 0.31 TCGA-GN-A266-06 20 31825524 31825524 C T BPIFA1 Nonsense_Mutation p.Q3* 0.37 TCGA-GN-A266-06 20 31878781 31878781 C T BPIFB1 Silent p.I128I 0.30 TCGA-GN-A266-06 20 31890760 31890760 C T BPIFB1 Silent p.I340I 0.20 TCGA-GN-A266-06 20 31967317 31967317 C T CDK5RAP1 Missense_Mutation p.E353K 0.11 deleterious(0) probably_damaging(0.956) TCGA-GN-A266-06 20 3210170 3210170 C T SLC4A11 Missense_Mutation p.S624N 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-GN-A266-06 20 33330866 33330866 G A NCOA6 Missense_Mutation p.S1065F 0.29 benign(0.206) TCGA-GN-A266-06 20 33581170 33581170 G A MYH7B Missense_Mutation p.E823K 0.26 probably_damaging(0.998) TCGA-GN-A266-06 20 33834757 33834757 C T MMP24 Missense_Mutation p.P121S 0.35 tolerated(0.2) probably_damaging(0.999) TCGA-GN-A266-06 20 33851659 33851659 G A MMP24 Missense_Mutation p.D295N 0.28 tolerated(0.56) probably_damaging(0.96) TCGA-GN-A266-06 20 33971916 33971916 G A UQCC1 Silent p.S50S 0.17 TCGA-GN-A266-06 20 34025277 34025277 G A GDF5 Silent p.F144F 0.16 TCGA-GN-A266-06 20 34078584 34078584 C T CEP250 Missense_Mutation p.A903V 0.41 benign(0.007) TCGA-GN-A266-06 20 34810307 34810307 G A EPB41L1 Silent p.K876K 0.38 TCGA-GN-A266-06 20 35060370 35060370 G A DLGAP4 Missense_Mutation p.E84K 0.22 deleterious(0.03) possibly_damaging(0.574) TCGA-GN-A266-06 20 35060385 35060385 C T DLGAP4 Missense_Mutation p.P89S 0.29 tolerated(0.85) probably_damaging(0.982) TCGA-GN-A266-06 20 35219809 35219809 C T TGIF2 Missense_Mutation p.P230L 0.32 tolerated_low_confidence(0.06) benign(0.001) TCGA-GN-A266-06 20 3564542 3564542 C T ATRN Intron 0.28 TCGA-GN-A266-06 20 35749412 35749412 G A MROH8 Silent p.L695L 0.30 TCGA-GN-A266-06 20 3577041 3577041 G A ATRN Missense_Mutation p.R1145Q 0.35 deleterious(0.03) benign(0.402) TCGA-GN-A266-06 20 36028682 36028682 G A SRC Missense_Mutation p.E342K 0.27 deleterious(0.01) benign(0.139) TCGA-GN-A266-06 20 3655221 3655221 C T ADAM33 Missense_Mutation p.G177E 0.23 deleterious(0) probably_damaging(0.911) TCGA-GN-A266-06 20 3669801 3669801 C T SIGLEC1 Splice_Site p.X1690_splice 0.38 TCGA-GN-A266-06 20 37547012 37547012 G A PPP1R16B Nonsense_Mutation p.W469* 0.33 TCGA-GN-A266-06 20 3869920 3869920 C T PANK2 Missense_Mutation p.P58L 0.45 deleterious_low_confidence(0) benign(0.017) TCGA-GN-A266-06 20 3915673 3915673 C T RNF24 Silent p.G113G 0.13 TCGA-GN-A266-06 20 40790089 40790089 C T PTPRT Missense_Mutation p.R862Q 0.27 deleterious(0.01) benign(0.05) TCGA-GN-A266-06 20 40877449 40877449 C T PTPRT Silent p.Q730Q 0.38 TCGA-GN-A266-06 20 40980823 40980823 C T PTPRT Missense_Mutation p.G555S 0.33 deleterious(0.04) possibly_damaging(0.68) TCGA-GN-A266-06 20 41306699 41306699 G A PTPRT Silent p.I320I 0.29 TCGA-GN-A266-06 20 4162483 4162483 G A SMOX Missense_Mutation p.D157N 0.09 tolerated(0.22) benign(0.002) TCGA-GN-A266-06 20 42196633 42196633 G A SGK2 Silent p.K134K 0.38 TCGA-GN-A266-06 20 42265791 42265791 C T IFT52 Missense_Mutation p.P340S 0.34 deleterious(0.03) benign(0.103) TCGA-GN-A266-06 20 42744384 42744384 C T JPH2 Missense_Mutation p.G644E 0.14 tolerated(0.96) benign(0.026) TCGA-GN-A266-06 20 42891969 42891969 T C GDAP1L1 Splice_Site p.X215_splice 0.32 TCGA-GN-A266-06 20 42907894 42907894 G A GDAP1L1 Missense_Mutation p.G353E 0.37 deleterious(0) probably_damaging(0.988) TCGA-GN-A266-06 20 43030112 43030112 T A HNF4A Missense_Mutation p.L34M 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 20 43043289 43043289 C T HNF4A Missense_Mutation p.P212L 0.30 tolerated(0.11) benign(0.013) TCGA-GN-A266-06 20 43043290 43043290 C T HNF4A Silent p.P212P 0.30 TCGA-GN-A266-06 20 43385568 43385568 G A RIMS4 Missense_Mutation p.P189S 0.10 tolerated_low_confidence(0.22) benign(0.005) TCGA-GN-A266-06 20 43752764 43752764 C T WFDC12 Silent p.V74V 0.36 TCGA-GN-A266-06 20 44108311 44108311 A C WFDC2 Intron 0.37 TCGA-GN-A266-06 20 44174409 44174409 C T EPPIN-WFDC6 Missense_Mutation p.R31K 0.28 tolerated(0.89) benign(0.015) TCGA-GN-A266-06 20 44181880 44181880 C T WFDC8 Missense_Mutation p.E161K 0.49 tolerated(0.83) benign(0.076) TCGA-GN-A266-06 20 44187548 44187548 C T WFDC8 Missense_Mutation p.E74K 0.25 tolerated(0.59) benign(0.038) TCGA-GN-A266-06 20 44190850 44190850 G A WFDC8 Missense_Mutation p.P12L 0.36 tolerated(0.06) benign(0.225) TCGA-GN-A266-06 20 44313380 44313380 G A WFDC10B 3'UTR 0.39 TCGA-GN-A266-06 20 44333195 44333195 G A WFDC10B Missense_Mutation p.S27F 0.33 deleterious_low_confidence(0.02) benign(0) TCGA-GN-A266-06 20 44443052 44443052 C T UBE2C Silent p.F53F 0.10 TCGA-GN-A266-06 20 44523714 44523714 C T CTSA Missense_Mutation p.P362S 0.32 tolerated(0.14) benign(0.175) TCGA-GN-A266-06 20 44690967 44690967 G A NCOA5 Missense_Mutation p.P571L 0.13 deleterious(0) possibly_damaging(0.856) TCGA-GN-A266-06 20 44980833 44980833 G A SLC35C2 Missense_Mutation p.R232C 0.21 tolerated(0.07) benign(0.19) TCGA-GN-A266-06 20 45131444 45131444 C T ZNF334 Missense_Mutation p.M178I 0.37 tolerated(0.17) benign(0.001) TCGA-GN-A266-06 20 45927583 45927583 G A ZMYND8 Missense_Mutation p.H115Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 20 46365584 46365584 G A SULF2 Missense_Mutation p.S93F 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 46365604 46365604 G A SULF2 Silent p.P86P 0.10 TCGA-GN-A266-06 20 46365605 46365605 G T SULF2 Missense_Mutation p.P86H 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 468211 468211 C T CSNK2A1 Missense_Mutation p.R278Q 0.14 deleterious(0) possibly_damaging(0.901) TCGA-GN-A266-06 20 4713232 4713232 G A PRNT Missense_Mutation p.P31S 0.39 tolerated_low_confidence(0.43) benign(0) TCGA-GN-A266-06 20 47253040 47253040 G A PREX1 Silent p.V1376V 0.35 TCGA-GN-A266-06 20 47271867 47271867 G A PREX1 Missense_Mutation p.R724C 0.18 tolerated(0.09) benign(0.003) TCGA-GN-A266-06 20 47274731 47274731 G A PREX1 Silent p.I639I 0.08 TCGA-GN-A266-06 20 4764858 4764858 C T RASSF2 3'UTR 0.32 TCGA-GN-A266-06 20 4768320 4768320 A G RASSF2 Missense_Mutation p.F258L 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-GN-A266-06 20 47990547 47990547 G A KCNB1 Missense_Mutation p.S517L 0.28 tolerated_low_confidence(0.26) benign(0.039) TCGA-GN-A266-06 20 49218764 49218764 C T FAM65C Missense_Mutation p.E498K 0.27 tolerated(0.71) benign(0.005) TCGA-GN-A266-06 20 49509502 49509502 G A ADNP Silent p.A583A 0.30 TCGA-GN-A266-06 20 49510758 49510758 A T ADNP Missense_Mutation p.Y165N 0.14 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 20 49620806 49620806 G A KCNG1 Nonsense_Mutation p.Q438* 0.28 TCGA-GN-A266-06 20 49626804 49626804 G A KCNG1 Silent p.F24F 0.19 TCGA-GN-A266-06 20 50217739 50217739 G A ATP9A 3'UTR 0.28 TCGA-GN-A266-06 20 50701796 50701796 G A ZFP64 Missense_Mutation p.P216L 0.45 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 20 51871280 51871280 A C TSHZ2 Missense_Mutation p.K428T 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-GN-A266-06 20 51872921 51872921 C T TSHZ2 Missense_Mutation p.S975L 0.20 tolerated(0.46) benign(0.354) TCGA-GN-A266-06 20 55012393 55012393 C T CASS4 Silent p.I70I 0.14 TCGA-GN-A266-06 20 55027835 55027835 G A CASS4 Missense_Mutation p.E535K 0.17 deleterious(0.02) benign(0.271) TCGA-GN-A266-06 20 55206395 55206395 C T TFAP2C Silent p.P61P 0.16 TCGA-GN-A266-06 20 56098996 56098996 G A CTCFL Missense_Mutation p.S89F 0.26 tolerated(0.05) benign(0.068) TCGA-GN-A266-06 20 56728623 56728623 C T C20orf85 Missense_Mutation p.S31L 0.35 tolerated(0.67) benign(0.02) TCGA-GN-A266-06 20 56993269 56993269 C T VAPB Missense_Mutation p.P21S 0.20 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 20 57429085 57429085 C T GNAS Silent p.F255F 0.38 TCGA-GN-A266-06 20 57771038 57771038 A T ZNF831 Nonsense_Mutation p.K1285* 0.39 TCGA-GN-A266-06 20 58342337 58342337 C T PHACTR3 Missense_Mutation p.S213F 0.31 tolerated(0.16) possibly_damaging(0.665) TCGA-GN-A266-06 20 5903950 5903950 G A CHGB Missense_Mutation p.R387K 0.27 tolerated(0.06) possibly_damaging(0.876) TCGA-GN-A266-06 20 60419756 60419756 C T CDH4 Silent p.I203I 0.31 TCGA-GN-A266-06 20 60499465 60499465 G A CDH4 Missense_Mutation p.V568M 0.17 tolerated(0.12) benign(0.179) TCGA-GN-A266-06 20 60589718 60589718 G C TAF4 Missense_Mutation p.P469R 0.29 possibly_damaging(0.767) TCGA-GN-A266-06 20 6065781 6065781 C T FERMT1 Missense_Mutation p.E509K 0.33 tolerated(0.64) benign(0.311) TCGA-GN-A266-06 20 6078265 6078265 C T FERMT1 Missense_Mutation p.R288Q 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 20 60854366 60854366 C T OSBPL2 Silent p.P215P 0.34 TCGA-GN-A266-06 20 60854378 60854378 C T OSBPL2 Silent p.I219I 0.33 TCGA-GN-A266-06 20 60887028 60887028 C T LAMA5 Missense_Mutation p.G3195S 0.22 probably_damaging(0.951) TCGA-GN-A266-06 20 61391529 61391529 G A NTSR1 Silent p.R389R 0.19 TCGA-GN-A266-06 20 61511969 61511969 G A DIDO1 Missense_Mutation p.P1780L 0.19 possibly_damaging(0.712) TCGA-GN-A266-06 20 61513529 61513529 G A DIDO1 Missense_Mutation p.S1260L 0.26 benign(0.129) TCGA-GN-A266-06 20 61574861 61574861 C T GID8 Silent p.I110I 0.36 TCGA-GN-A266-06 20 61908621 61908621 C T ARFGAP1 Missense_Mutation p.P136L 0.16 deleterious(0) benign(0.349) TCGA-GN-A266-06 20 61945238 61945238 A T COL20A1 Nonsense_Mutation p.K785* 0.17 TCGA-GN-A266-06 20 61959771 61959771 C T COL20A1 Silent p.P1234P 0.32 TCGA-GN-A266-06 20 62046258 62046258 T C KCNQ2 Missense_Mutation p.E508G 0.16 deleterious(0.03) possibly_damaging(0.854) TCGA-GN-A266-06 20 62163970 62163970 G A PTK6 Silent p.I247I 0.37 TCGA-GN-A266-06 20 62571990 62571990 C T UCKL1 Missense_Mutation p.G420D 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 20 62698298 62698298 C T TCEA2 Missense_Mutation p.L56F 0.17 tolerated(0.1) probably_damaging(0.978) TCGA-GN-A266-06 20 62701940 62701940 C T TCEA2 Silent p.D257D 0.40 TCGA-GN-A266-06 20 62701941 62701941 C T TCEA2 Silent p.L258L 0.38 TCGA-GN-A266-06 20 7895041 7895041 C T HAO1 Missense_Mutation p.M105I 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-GN-A266-06 20 896618 896618 C T ANGPT4 Silent p.G80G 0.30 TCGA-GN-A266-06 20 9317805 9317805 C T PLCB4 Silent p.F39F 0.13 TCGA-GN-A266-06 20 9318655 9318655 G A PLCB4 Missense_Mutation p.E56K 0.44 deleterious(0.02) probably_damaging(0.948) TCGA-GN-A266-06 20 9416235 9416235 G A PLCB4 Silent p.K839K 0.29 TCGA-GN-A266-06 20 9520066 9520066 C T PAK7 3'UTR 0.21 TCGA-GN-A266-06 21 10916373 10916373 G A TPTE Missense_Mutation p.P425S 0.19 tolerated(0.2) benign(0.02) TCGA-GN-A266-06 21 10969106 10969106 C T TPTE Missense_Mutation p.G48R 0.25 tolerated(0.15) benign(0.096) TCGA-GN-A266-06 21 15538721 15538721 C T LIPI Missense_Mutation p.G253E 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 21 17603373 17603373 C T LINC00478 Intron 0.41 TCGA-GN-A266-06 21 22804491 22804491 C T NCAM2 Missense_Mutation p.S515F 0.54 tolerated(0.05) benign(0.023) TCGA-GN-A266-06 21 22841002 22841002 C T NCAM2 Silent p.S598S 0.60 TCGA-GN-A266-06 21 22910293 22910293 G A NCAM2 3'UTR 0.35 TCGA-GN-A266-06 21 27423460 27423460 G A APP Missense_Mutation p.P173L 0.61 deleterious(0) unknown(0) TCGA-GN-A266-06 21 30971160 30971160 C T GRIK1 Missense_Mutation p.G399E 0.48 tolerated(0.06) probably_damaging(0.989) TCGA-GN-A266-06 21 31802910 31802910 G A KRTAP13-4 Missense_Mutation p.G106E 0.24 deleterious(0) probably_damaging(0.934) TCGA-GN-A266-06 21 32496913 32496913 G A TIAM1 Silent p.S1411S 0.49 TCGA-GN-A266-06 21 32638800 32638800 C T TIAM1 Silent p.A163A 0.58 TCGA-GN-A266-06 21 33368233 33368233 G C HUNK Missense_Mutation p.K486N 0.21 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-GN-A266-06 21 33371477 33371477 G A HUNK Missense_Mutation p.G709R 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-GN-A266-06 21 34166294 34166294 C T C21orf62 Missense_Mutation p.D147N 0.44 tolerated(0.35) possibly_damaging(0.747) TCGA-GN-A266-06 21 34715863 34715863 C T IFNAR1 Missense_Mutation p.S185F 0.20 tolerated(0.62) benign(0.3) TCGA-GN-A266-06 21 36081660 36081660 G A CLIC6 Missense_Mutation p.E575K 0.18 deleterious(0.02) probably_damaging(0.965) TCGA-GN-A266-06 21 37833570 37833570 C T CLDN14 Missense_Mutation p.D142N 0.15 tolerated(0.34) benign(0.14) TCGA-GN-A266-06 21 39086553 39086553 C T KCNJ6 Missense_Mutation p.E303K 0.44 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 21 40847111 40847111 C T SH3BGR Silent p.F157F 0.32 TCGA-GN-A266-06 21 41452104 41452104 G A DSCAM Silent p.I1465I 0.60 TCGA-GN-A266-06 21 41725641 41725641 C T DSCAM Missense_Mutation p.D229N 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-GN-A266-06 21 43160922 43160922 G A RIPK4 3'UTR 0.50 TCGA-GN-A266-06 21 43176852 43176852 A T RIPK4 Missense_Mutation p.S103T 0.27 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 21 43332482 43332482 C T C2CD2 Silent p.T304T 0.63 TCGA-GN-A266-06 21 43766554 43766554 C T TFF2 3'UTR 0.43 TCGA-GN-A266-06 21 43795855 43795855 G A TMPRSS3 Silent p.S439S 0.51 TCGA-GN-A266-06 21 43988541 43988541 C T SLC37A1 Silent p.G472G 0.50 TCGA-GN-A266-06 21 44836679 44836679 G A SIK1 Silent p.D765D 0.64 TCGA-GN-A266-06 21 45837832 45837832 G A TRPM2 Missense_Mutation p.E1057K 0.40 deleterious(0.01) possibly_damaging(0.589) TCGA-GN-A266-06 21 45959149 45959149 C T KRTAP10-1 3'UTR 0.64 TCGA-GN-A266-06 21 45987759 45987759 G A TSPEAR Silent p.F71F 0.14 TCGA-GN-A266-06 21 46012258 46012258 G A KRTAP10-6 Silent p.D36D 0.40 TCGA-GN-A266-06 21 48068379 48068379 T C PRMT2 Silent p.L113L 0.50 TCGA-GN-A266-06 22 16269895 16269895 C T POTEH Missense_Mutation p.G429E 0.25 tolerated(0.2) possibly_damaging(0.488) TCGA-GN-A266-06 22 16269896 16269896 C T POTEH Missense_Mutation p.G429R 0.24 tolerated(0.12) possibly_damaging(0.766) TCGA-GN-A266-06 22 16279199 16279199 C T POTEH Missense_Mutation p.G342R 0.07 tolerated(0.14) probably_damaging(0.994) TCGA-GN-A266-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.08 TCGA-GN-A266-06 22 16287928 16287928 C T POTEH 5'UTR 0.12 TCGA-GN-A266-06 22 17072779 17072779 C T CCT8L2 Missense_Mutation p.G221E 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 22 17072847 17072847 G A CCT8L2 Silent p.F198F 0.44 TCGA-GN-A266-06 22 17117938 17117938 T A TPTEP1 RNA 0.16 TCGA-GN-A266-06 22 17288676 17288676 C T XKR3 Silent p.K96K 0.20 TCGA-GN-A266-06 22 17288700 17288700 G A XKR3 Silent p.F88F 0.24 TCGA-GN-A266-06 22 17288907 17288907 C T XKR3 Silent p.S19S 0.15 TCGA-GN-A266-06 22 17445659 17445659 G A GAB4 Silent p.F491F 0.32 TCGA-GN-A266-06 22 17680471 17680471 C T CECR1 Intron 0.32 TCGA-GN-A266-06 22 18020357 18020357 C T CECR2 Silent p.P563P 0.30 TCGA-GN-A266-06 22 18300928 18300928 T C MICAL3 Missense_Mutation p.E1500G 0.19 benign(0.058) TCGA-GN-A266-06 22 18300929 18300929 C T MICAL3 Missense_Mutation p.E1500K 0.19 benign(0.003) TCGA-GN-A266-06 22 19121774 19121774 G A DGCR14 Missense_Mutation p.P456S 0.33 tolerated(0.32) benign(0.272) TCGA-GN-A266-06 22 19125737 19125737 G A DGCR14 Missense_Mutation p.P306S 0.23 deleterious(0) probably_damaging(0.972) TCGA-GN-A266-06 22 19197878 19197878 G A CLTCL1 Silent p.F1069F 0.27 TCGA-GN-A266-06 22 19203732 19203732 G A CLTCL1 Missense_Mutation p.P985L 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 22 20457175 20457175 T A RIMBP3 Missense_Mutation p.H1376L 0.13 tolerated(0.64) benign(0.047) TCGA-GN-A266-06 22 21841904 21841904 G A PI4KAP2 RNA 0.24 TCGA-GN-A266-06 22 22285612 22285612 G A PPM1F Silent p.L267L 0.36 TCGA-GN-A266-06 22 22786696 22786696 C T IGLV1-36 Silent p.F82F 0.30 TCGA-GN-A266-06 22 23603604 23603604 C T BCR Silent p.I543I 0.33 TCGA-GN-A266-06 22 23615301 23615301 G T BCR Missense_Mutation p.R652M 0.08 deleterious(0) probably_damaging(0.951) TCGA-GN-A266-06 22 23915751 23915751 G A IGLL1 Missense_Mutation p.S115L 0.17 tolerated_low_confidence(0.18) benign(0.007) TCGA-GN-A266-06 22 23982586 23982586 C T GUSBP11 Intron 0.33 TCGA-GN-A266-06 22 24085836 24085836 G A ZNF70 3'UTR 0.36 TCGA-GN-A266-06 22 24086478 24086478 G A ZNF70 Missense_Mutation p.L284F 0.25 deleterious(0) probably_damaging(0.952) TCGA-GN-A266-06 22 24911324 24911324 G A UPB1 Silent p.T259T 0.29 TCGA-GN-A266-06 22 25010854 25010854 C T GGT1 Silent p.T92T 0.21 TCGA-GN-A266-06 22 25023352 25023352 C T GGT1 Intron 0.50 TCGA-GN-A266-06 22 25264765 25264765 G A SGSM1 Missense_Mutation p.D412N 0.36 deleterious(0.05) benign(0.305) TCGA-GN-A266-06 22 25270515 25270515 C T SGSM1 Silent p.L475L 0.29 TCGA-GN-A266-06 22 25270516 25270516 C T SGSM1 Missense_Mutation p.P476S 0.35 tolerated(0.75) benign(0.01) TCGA-GN-A266-06 22 25294145 25294145 G A SGSM1 Silent p.R798R 0.17 TCGA-GN-A266-06 22 26164822 26164822 C T MYO18B Silent p.I313I 0.28 TCGA-GN-A266-06 22 26164826 26164826 G A MYO18B Missense_Mutation p.G315R 0.25 tolerated_low_confidence(0.33) benign(0.043) TCGA-GN-A266-06 22 26194048 26194048 G A MYO18B Silent p.A835A 0.46 TCGA-GN-A266-06 22 26343750 26343750 G A MYO18B Missense_Mutation p.D1902N 0.37 deleterious(0) possibly_damaging(0.894) TCGA-GN-A266-06 22 26423569 26423569 C T MYO18B Silent p.P2543P 0.40 TCGA-GN-A266-06 22 26688857 26688857 C T SEZ6L Missense_Mutation p.P194S 0.20 deleterious(0.01) possibly_damaging(0.698) TCGA-GN-A266-06 22 26688885 26688885 C T SEZ6L Missense_Mutation p.S203F 0.16 deleterious(0) benign(0.418) TCGA-GN-A266-06 22 26706748 26706748 G A SEZ6L Missense_Mutation p.E543K 0.24 deleterious(0.02) possibly_damaging(0.698) TCGA-GN-A266-06 22 26860329 26860329 T C HPS4 Missense_Mutation p.S423G 0.27 tolerated(0.47) benign(0.013) TCGA-GN-A266-06 22 29139878 29139878 C T HSCB Missense_Mutation p.S82F 0.33 deleterious(0) probably_damaging(0.925) TCGA-GN-A266-06 22 29446881 29446881 C T ZNRF3 Silent p.F904F 0.27 TCGA-GN-A266-06 22 29656822 29656822 G A RHBDD3 Silent p.P188P 0.53 TCGA-GN-A266-06 22 29693828 29693828 C G EWSR1 Missense_Mutation p.Q441E 0.12 deleterious(0.04) unknown(0) TCGA-GN-A266-06 22 29886023 29886023 G A NEFH Silent p.K798K 0.47 TCGA-GN-A266-06 22 29886024 29886024 G A NEFH Missense_Mutation p.A799T 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-GN-A266-06 22 29965262 29965262 G A NIPSNAP1 Missense_Mutation p.P96L 0.18 deleterious(0.05) benign(0.03) TCGA-GN-A266-06 22 30419456 30419456 C T MTMR3 Intron 0.33 TCGA-GN-A266-06 22 30518046 30518046 G A HORMAD2 Missense_Mutation p.G221E 0.45 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 22 30640036 30640036 C T LIF Silent p.G71G 0.44 TCGA-GN-A266-06 22 31331295 31331295 G A MORC2 Silent p.I522I 0.17 TCGA-GN-A266-06 22 31487081 31487081 C T SMTN Missense_Mutation p.P358S 0.13 tolerated(0.85) benign(0.001) TCGA-GN-A266-06 22 31533881 31533881 G A PLA2G3 Missense_Mutation p.S294F 0.21 deleterious(0.02) benign(0.001) TCGA-GN-A266-06 22 32215147 32215147 T A DEPDC5 Silent p.A602A 0.48 TCGA-GN-A266-06 22 32215160 32215160 C T DEPDC5 Missense_Mutation p.P607S 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A266-06 22 32880020 32880020 C T FBXO7 Missense_Mutation p.T185I 0.42 tolerated(0.58) benign(0.008) TCGA-GN-A266-06 22 32924936 32924936 C T SYN3 Missense_Mutation p.M385I 0.23 tolerated(1) unknown(0) TCGA-GN-A266-06 22 33673202 33673202 G A LARGE Silent p.F639F 0.19 TCGA-GN-A266-06 22 33733769 33733769 G A LARGE Missense_Mutation p.P384S 0.20 deleterious(0.02) benign(0.39) TCGA-GN-A266-06 22 34046368 34046368 G A LARGE Silent p.V131V 0.19 TCGA-GN-A266-06 22 35799484 35799484 C T MCM5 Silent p.I124I 0.12 TCGA-GN-A266-06 22 36013288 36013288 C T MB Missense_Mutation p.G6E 0.42 tolerated(0.09) benign(0.011) TCGA-GN-A266-06 22 36960533 36960533 C T CACNG2 Silent p.K279K 0.41 TCGA-GN-A266-06 22 37209712 37209712 C T PVALB Silent p.G94G 0.24 TCGA-GN-A266-06 22 37211164 37211164 G A PVALB Silent p.I59I 0.24 TCGA-GN-A266-06 22 37272105 37272105 C T NCF4 Silent p.L346L 0.29 TCGA-GN-A266-06 22 37273719 37273719 G A NCF4 3'UTR 0.24 TCGA-GN-A266-06 22 37407092 37407092 G A TST Silent p.S290S 0.30 TCGA-GN-A266-06 22 37462263 37462263 G A TMPRSS6 Missense_Mutation p.P765S 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 22 37602955 37602955 G A SSTR3 Silent p.F296F 0.16 TCGA-GN-A266-06 22 37770345 37770345 G A ELFN2 Silent p.I410I 0.20 TCGA-GN-A266-06 22 37964701 37964701 C T CDC42EP1 Silent p.S350S 0.41 TCGA-GN-A266-06 22 38120920 38120920 C T TRIOBP Missense_Mutation p.A786V 0.38 deleterious_low_confidence(0) benign(0.005) TCGA-GN-A266-06 22 38120921 38120921 C T TRIOBP Silent p.A786A 0.38 TCGA-GN-A266-06 22 38245426 38245426 C T EIF3L 5'UTR 0.21 TCGA-GN-A266-06 22 39120355 39120355 C T GTPBP1 Missense_Mutation p.P338S 0.15 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 22 39421083 39421083 C T APOBEC3D Silent p.F73F 0.29 TCGA-GN-A266-06 22 39445537 39445537 T C APOBEC3F Missense_Mutation p.V225A 0.44 tolerated(0.06) benign(0.045) TCGA-GN-A266-06 22 39497945 39497945 C A APOBEC3H Missense_Mutation p.N147K 0.19 tolerated(0.44) benign(0.241) TCGA-GN-A266-06 22 40283749 40283749 C T ENTHD1 Missense_Mutation p.A2T 0.18 deleterious(0) probably_damaging(0.957) TCGA-GN-A266-06 22 41621034 41621034 C T L3MBTL2 Missense_Mutation p.P439S 0.23 deleterious(0.03) probably_damaging(1) TCGA-GN-A266-06 22 42189900 42189900 G A MEI1 Missense_Mutation p.R1138Q 0.18 deleterious(0.02) possibly_damaging(0.852) TCGA-GN-A266-06 22 42195349 42195349 G A MEI1 3'UTR 0.53 TCGA-GN-A266-06 22 42525765 42525765 G A CYP2D6 Silent p.I109I 0.34 TCGA-GN-A266-06 22 42952491 42952491 T A SERHL2 Intron 0.24 TCGA-GN-A266-06 22 43735128 43735128 C T SCUBE1 Missense_Mutation p.E68K 0.32 deleterious(0.03) benign(0.217) TCGA-GN-A266-06 22 43933371 43933371 G A EFCAB6 Missense_Mutation p.P1312S 0.20 deleterious(0.01) possibly_damaging(0.717) TCGA-GN-A266-06 22 43996129 43996129 C T EFCAB6 Missense_Mutation p.G899E 0.14 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 22 44237795 44237795 C T SULT4A1 Missense_Mutation p.E63K 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-GN-A266-06 22 45283928 45283928 G A PHF21B Missense_Mutation p.P371L 0.43 deleterious(0.01) probably_damaging(0.959) TCGA-GN-A266-06 22 45283929 45283929 G A PHF21B Missense_Mutation p.P371S 0.43 tolerated(0.33) benign(0.277) TCGA-GN-A266-06 22 45309846 45309846 G A PHF21B Silent p.F229F 0.47 TCGA-GN-A266-06 22 45681819 45681819 C T UPK3A Intron 0.27 TCGA-GN-A266-06 22 45923772 45923772 G A FBLN1 Missense_Mutation p.G123S 0.19 tolerated(0.14) probably_damaging(0.982) TCGA-GN-A266-06 22 45970511 45970511 C G FBLN1 Missense_Mutation p.F606L 0.31 tolerated(0.19) possibly_damaging(0.483) TCGA-GN-A266-06 22 46653856 46653856 G A PKDREJ Silent p.I1788I 0.46 TCGA-GN-A266-06 22 47071398 47071398 C T GRAMD4 Silent p.S504S 0.16 TCGA-GN-A266-06 22 50483717 50483717 C T TTLL8 Missense_Mutation p.E240K 0.30 tolerated(0.13) benign(0.424) TCGA-GN-A266-06 22 50500075 50500075 G A MLC1 Silent p.S357S 0.39 TCGA-GN-A266-06 22 50885667 50885667 C T SBF1 Silent p.V1862V 0.41 TCGA-GN-A266-06 2 100167982 100167982 G A AFF3 Missense_Mutation p.S1237F 0.16 deleterious(0) possibly_damaging(0.477) TCGA-GN-A266-06 2 100911913 100911913 C T LONRF2 Missense_Mutation p.E527K 0.34 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 2 10105479 10105479 C T GRHL1 Missense_Mutation p.S360F 0.35 deleterious(0) possibly_damaging(0.701) TCGA-GN-A266-06 2 101655105 101655105 C T TBC1D8 Missense_Mutation p.E350K 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 102000125 102000125 C T CREG2 Missense_Mutation p.D161N 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 102625058 102625058 G A IL1R2 Silent p.L7L 0.23 TCGA-GN-A266-06 2 102957179 102957179 C T IL1RL1 Silent p.V167V 0.22 TCGA-GN-A266-06 2 102968097 102968097 G A IL1RL1 Missense_Mutation p.E463K 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-GN-A266-06 2 102984491 102984491 G A IL18R1 Missense_Mutation p.E89K 0.20 tolerated(0.13) benign(0.063) TCGA-GN-A266-06 2 102992414 102992414 G A IL18R1 Silent p.K172K 0.38 TCGA-GN-A266-06 2 102992417 102992417 G A IL18R1 Silent p.K173K 0.40 TCGA-GN-A266-06 2 103061691 103061691 C T IL18RAP Silent p.I321I 0.38 TCGA-GN-A266-06 2 103068677 103068677 G A IL18RAP 3'UTR 0.24 TCGA-GN-A266-06 2 103068678 103068678 G A IL18RAP 3'UTR 0.25 TCGA-GN-A266-06 2 103236460 103236460 C T SLC9A2 Silent p.S51S 0.56 TCGA-GN-A266-06 2 103236592 103236592 G C SLC9A2 Missense_Mutation p.K95N 0.44 deleterious(0) possibly_damaging(0.681) TCGA-GN-A266-06 2 103274273 103274273 T A SLC9A2 Missense_Mutation p.N180K 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 2 103274276 103274276 C T SLC9A2 Silent p.S181S 0.40 TCGA-GN-A266-06 2 103317563 103317563 C T SLC9A2 Missense_Mutation p.L541F 0.21 tolerated(0.21) probably_damaging(0.999) TCGA-GN-A266-06 2 103317564 103317564 T C SLC9A2 Missense_Mutation p.L541P 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 2 107041049 107041049 C T RGPD3 Missense_Mutation p.G1125E 0.17 deleterious(0.01) possibly_damaging(0.821) TCGA-GN-A266-06 2 107049619 107049619 T C RGPD3 Missense_Mutation p.I776M 0.20 tolerated(0.13) benign(0.071) TCGA-GN-A266-06 2 108475844 108475844 C T RGPD4 Missense_Mutation p.L490F 0.29 deleterious(0.02) possibly_damaging(0.86) TCGA-GN-A266-06 2 108487731 108487731 G A RGPD4 Missense_Mutation p.E1091K 0.23 tolerated(0.65) possibly_damaging(0.512) TCGA-GN-A266-06 2 108488514 108488514 G A RGPD4 Missense_Mutation p.E1352K 0.22 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 2 108489291 108489291 G A RGPD4 Missense_Mutation p.E1611K 0.28 tolerated_low_confidence(0.9) benign(0.001) TCGA-GN-A266-06 2 108499277 108499277 G A RGPD4 Silent p.T1738T 0.30 TCGA-GN-A266-06 2 108627152 108627152 G A SLC5A7 Missense_Mutation p.M526I 0.16 tolerated(0.49) benign(0.032) TCGA-GN-A266-06 2 108881739 108881739 G A SULT1C3 Missense_Mutation p.E283K 0.22 tolerated(0.07) benign(0.274) TCGA-GN-A266-06 2 109367805 109367805 C T RANBP2 Silent p.I453I 0.17 TCGA-GN-A266-06 2 110049065 110049065 G A SH3RF3 Silent p.G504G 0.29 TCGA-GN-A266-06 2 110065723 110065723 C T SH3RF3 Silent p.L642L 0.50 TCGA-GN-A266-06 2 11053886 11053886 C T KCNF1 Missense_Mutation p.S445F 0.17 deleterious(0.01) benign(0.34) TCGA-GN-A266-06 2 110849256 110849256 G A MALL Missense_Mutation p.S66L 0.20 tolerated(0.14) benign(0.408) TCGA-GN-A266-06 2 111551742 111551742 C T ACOXL Silent p.L112L 0.24 TCGA-GN-A266-06 2 111691088 111691088 G A ACOXL Missense_Mutation p.E310K 0.20 tolerated(0.24) benign(0.009) TCGA-GN-A266-06 2 113147254 113147254 C T RGPD8 Missense_Mutation p.E1090K 0.19 tolerated(0.63) benign(0.235) TCGA-GN-A266-06 2 113316947 113316947 C T POLR1B Missense_Mutation p.R470C 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 113537166 113537166 C T IL1A Missense_Mutation p.E133K 0.24 tolerated(0.17) benign(0.006) TCGA-GN-A266-06 2 113588928 113588928 C T IL1B Missense_Mutation p.E180K 0.34 tolerated(0.35) benign(0.002) TCGA-GN-A266-06 2 113742450 113742450 G A IL36G Missense_Mutation p.E112K 0.36 tolerated(0.2) benign(0.049) TCGA-GN-A266-06 2 113789344 113789344 C T IL36B Splice_Site 0.17 TCGA-GN-A266-06 2 113832355 113832355 C T IL1F10 Silent p.F58F 0.28 TCGA-GN-A266-06 2 113950132 113950132 C T PSD4 Missense_Mutation p.R602W 0.27 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 2 114036013 114036013 C T PAX8 5'UTR 0.48 TCGA-GN-A266-06 2 11593743 11593743 G A E2F6 Silent p.L115L 0.50 TCGA-GN-A266-06 2 119739064 119739064 C T MARCO Silent p.F282F 0.40 TCGA-GN-A266-06 2 119749407 119749407 G A MARCO Missense_Mutation p.G388E 0.38 deleterious(0) unknown(0) TCGA-GN-A266-06 2 120194518 120194518 C T TMEM37 Silent p.F25F 0.31 TCGA-GN-A266-06 2 120223413 120223413 G A SCTR Missense_Mutation p.S152F 0.26 tolerated(0.11) benign(0.038) TCGA-GN-A266-06 2 120373202 120373202 C T PCDP1 Missense_Mutation p.H443Y 0.33 tolerated(0.13) benign(0.187) TCGA-GN-A266-06 2 127821520 127821520 G A BIN1 Silent p.S229S 0.12 TCGA-GN-A266-06 2 128015096 128015096 G A ERCC3 3'UTR 0.34 TCGA-GN-A266-06 2 128079620 128079620 A C MAP3K2 Splice_Site p.X349_splice 0.47 TCGA-GN-A266-06 2 128183746 128183746 A G PROC Silent p.Q207Q 0.38 TCGA-GN-A266-06 2 128331610 128331610 C T MYO7B Silent p.L236L 0.35 TCGA-GN-A266-06 2 128363455 128363455 C T MYO7B Silent p.T792T 0.28 TCGA-GN-A266-06 2 130832851 130832851 G A POTEF Missense_Mutation p.P732S 0.15 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-GN-A266-06 2 130832852 130832852 G A POTEF Silent p.F731F 0.14 TCGA-GN-A266-06 2 130899763 130899763 G A CCDC74B Missense_Mutation p.P163S 0.21 tolerated(0.23) benign(0.093) TCGA-GN-A266-06 2 131487355 131487355 C T GPR148 Missense_Mutation p.P211S 0.22 tolerated(0.79) benign(0.002) TCGA-GN-A266-06 2 132021798 132021798 G A POTEE Missense_Mutation p.E924K 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.578) TCGA-GN-A266-06 2 133174768 133174768 C T GPR39 Silent p.T51T 0.28 TCGA-GN-A266-06 2 133175434 133175434 G A GPR39 Silent p.E273E 0.23 TCGA-GN-A266-06 2 133489315 133489315 G A NCKAP5 Missense_Mutation p.S1813F 0.29 deleterious(0) probably_damaging(0.985) TCGA-GN-A266-06 2 133539967 133539967 C T NCKAP5 Missense_Mutation p.E1473K 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 2 135260567 135260567 C T TMEM163 Missense_Mutation p.A154T 0.47 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 2 135630121 135630121 G A ACMSD Missense_Mutation p.M253I 0.31 tolerated(0.8) benign(0) TCGA-GN-A266-06 2 136023176 136023176 G A ZRANB3 Silent p.F489F 0.50 TCGA-GN-A266-06 2 136548425 136548425 G A LCT Missense_Mutation p.S1713L 0.15 deleterious(0.03) benign(0.329) TCGA-GN-A266-06 2 136624252 136624252 G A MCM6 Missense_Mutation p.P221L 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 137814328 137814328 G A THSD7B Missense_Mutation p.E160K 0.22 deleterious(0.02) benign(0.33) TCGA-GN-A266-06 2 137988647 137988647 C A THSD7B Missense_Mutation p.P586H 0.21 tolerated(0.27) possibly_damaging(0.891) TCGA-GN-A266-06 2 137988648 137988648 C T THSD7B Silent p.P586P 0.21 TCGA-GN-A266-06 2 137990485 137990485 C T THSD7B Silent p.P644P 0.36 TCGA-GN-A266-06 2 138413174 138413174 G A THSD7B Missense_Mutation p.G1353E 0.32 deleterious(0.05) unknown(0) TCGA-GN-A266-06 2 140990791 140990791 C T LRP1B Silent p.K4588K 0.60 TCGA-GN-A266-06 2 140995765 140995765 C T LRP1B Missense_Mutation p.D4506N 0.11 possibly_damaging(0.555) TCGA-GN-A266-06 2 141083357 141083357 G A LRP1B Missense_Mutation p.S4105L 0.22 benign(0.307) TCGA-GN-A266-06 2 141093194 141093194 G A LRP1B Missense_Mutation p.P4036S 0.34 possibly_damaging(0.641) TCGA-GN-A266-06 2 141294268 141294268 G A LRP1B Silent p.S2508S 0.29 TCGA-GN-A266-06 2 141819760 141819760 C T LRP1B Missense_Mutation p.D366N 0.20 possibly_damaging(0.539) TCGA-GN-A266-06 2 148653910 148653910 C T ACVR2A Silent p.F32F 0.20 TCGA-GN-A266-06 2 149247110 149247110 G A MBD5 Silent p.Q1070Q 0.24 TCGA-GN-A266-06 2 1500513 1500513 G A TPO Missense_Mutation p.D788N 0.31 tolerated(0.54) benign(0.008) TCGA-GN-A266-06 2 152112214 152112214 G C RBM43 Missense_Mutation p.T16R 0.14 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 2 152370118 152370118 C T NEB Silent p.R7739R 0.29 TCGA-GN-A266-06 2 152381753 152381753 C T NEB Missense_Mutation p.G7399E 0.36 probably_damaging(1) TCGA-GN-A266-06 2 152410392 152410392 C T NEB Missense_Mutation p.D6526N 0.41 probably_damaging(1) TCGA-GN-A266-06 2 152432249 152432249 T G NEB Missense_Mutation p.E5658A 0.26 benign(0.435) TCGA-GN-A266-06 2 152483634 152483634 G A NEB Missense_Mutation p.A3410V 0.14 probably_damaging(0.999) TCGA-GN-A266-06 2 152490409 152490409 G A NEB Missense_Mutation p.P3058L 0.15 probably_damaging(0.938) TCGA-GN-A266-06 2 152507377 152507377 C T NEB Missense_Mutation p.R2313Q 0.34 probably_damaging(0.994) TCGA-GN-A266-06 2 152527697 152527697 C T NEB Nonsense_Mutation p.W1449* 0.33 TCGA-GN-A266-06 2 152553214 152553214 G A NEB Silent p.F502F 0.12 TCGA-GN-A266-06 2 153475652 153475652 C T FMNL2 Missense_Mutation p.S536L 0.23 benign(0.003) TCGA-GN-A266-06 2 15427214 15427214 G A NBAS Silent p.F1707F 0.16 TCGA-GN-A266-06 2 154800909 154800909 G A GALNT13 Intron 0.27 TCGA-GN-A266-06 2 155099242 155099242 G A GALNT13 Silent p.V170V 0.38 TCGA-GN-A266-06 2 155265588 155265588 A T GALNT13 Silent p.G463G 0.20 TCGA-GN-A266-06 2 155295165 155295165 G A GALNT13 Missense_Mutation p.R486K 0.43 tolerated(1) benign(0.004) TCGA-GN-A266-06 2 155555701 155555701 C T KCNJ3 Silent p.I138I 0.18 TCGA-GN-A266-06 2 155711558 155711558 C T KCNJ3 Silent p.P413P 0.26 TCGA-GN-A266-06 2 155711578 155711578 G A KCNJ3 Missense_Mutation p.S420N 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.448) TCGA-GN-A266-06 2 158156154 158156154 G A GALNT5 Missense_Mutation p.E698K 0.27 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 2 158962653 158962653 G A UPP2 Missense_Mutation p.M92I 0.14 tolerated(0.05) benign(0.104) TCGA-GN-A266-06 2 160035379 160035381 CTT - TANC1 In_Frame_Del p.L739del 0.32 TCGA-GN-A266-06 2 160738809 160738809 C T LY75-CD302 Missense_Mutation p.D358N 0.14 tolerated(0.16) probably_damaging(0.981) TCGA-GN-A266-06 2 160808060 160808060 C T PLA2R1 Missense_Mutation p.D1111N 0.29 tolerated(0.35) benign(0.013) TCGA-GN-A266-06 2 160824073 160824073 C A PLA2R1 Nonsense_Mutation p.G961* 0.29 TCGA-GN-A266-06 2 163134828 163134828 T A IFIH1 Missense_Mutation p.K551I 0.44 deleterious(0.02) possibly_damaging(0.905) TCGA-GN-A266-06 2 165947098 165947098 G A SCN3A Silent p.A1855A 0.47 TCGA-GN-A266-06 2 165947222 165947222 G A SCN3A Missense_Mutation p.S1814F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 2 165984493 165984493 C T SCN3A Missense_Mutation p.G1014E 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 166210825 166210825 G A SCN2A Missense_Mutation p.D1015N 0.41 tolerated(0.54) benign(0.021) TCGA-GN-A266-06 2 166900244 166900244 G A SCN1A Missense_Mutation p.P660S 0.15 tolerated(0.49) possibly_damaging(0.734) TCGA-GN-A266-06 2 166929916 166929916 C T SCN1A Missense_Mutation p.M72I 0.45 deleterious(0.02) benign(0.186) TCGA-GN-A266-06 2 1670155 1670155 G A PXDN Silent p.S374S 0.27 TCGA-GN-A266-06 2 167056260 167056260 A G SCN9A Missense_Mutation p.I1619T 0.36 deleterious(0) possibly_damaging(0.79) TCGA-GN-A266-06 2 167298046 167298046 C T SCN7A Missense_Mutation p.D673N 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A266-06 2 167319026 167319026 C T SCN7A Missense_Mutation p.G319E 0.29 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 2 167322339 167322339 C T SCN7A Missense_Mutation p.E275K 0.12 tolerated(0.53) benign(0.026) TCGA-GN-A266-06 2 16742799 16742799 C T FAM49A Missense_Mutation p.M146I 0.34 deleterious(0.04) benign(0.443) TCGA-GN-A266-06 2 168102229 168102229 G A XIRP2 Missense_Mutation p.E1443K 0.43 probably_damaging(0.999) TCGA-GN-A266-06 2 168103356 168103356 G A XIRP2 Silent p.K1818K 0.12 TCGA-GN-A266-06 2 168103357 168103357 G T XIRP2 Missense_Mutation p.V1819F 0.12 possibly_damaging(0.891) TCGA-GN-A266-06 2 168104641 168104641 C T XIRP2 Missense_Mutation p.H2247Y 0.45 benign(0.009) TCGA-GN-A266-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.25 TCGA-GN-A266-06 2 168108325 168108325 G A XIRP2 Missense_Mutation p.E3475K 0.24 possibly_damaging(0.57) TCGA-GN-A266-06 2 168115079 168115079 G A XIRP2 3'UTR 0.24 TCGA-GN-A266-06 2 168725897 168725897 C T B3GALT1 Silent p.F116F 0.35 TCGA-GN-A266-06 2 168812061 168812061 G A STK39 Missense_Mutation p.S528L 0.25 deleterious(0.02) benign(0.016) TCGA-GN-A266-06 2 169780224 169780224 C T ABCB11 Missense_Mutation p.G1292R 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 169792852 169792852 C T ABCB11 Missense_Mutation p.S901N 0.33 deleterious(0) possibly_damaging(0.598) TCGA-GN-A266-06 2 169850324 169850324 G A ABCB11 Missense_Mutation p.T227I 0.43 deleterious(0.04) benign(0.102) TCGA-GN-A266-06 2 169995847 169995847 G A LRP2 Silent p.I4434I 0.44 TCGA-GN-A266-06 2 170038771 170038771 C T LRP2 Missense_Mutation p.G3302R 0.33 benign(0.001) TCGA-GN-A266-06 2 170058349 170058349 G T LRP2 Silent p.T2747T 0.52 TCGA-GN-A266-06 2 170070350 170070350 G A LRP2 Nonsense_Mutation p.R1953* 0.26 TCGA-GN-A266-06 2 170097749 170097749 G A LRP2 Missense_Mutation p.A1265V 0.28 benign(0.315) TCGA-GN-A266-06 2 170367288 170367288 C T KLHL41 Missense_Mutation p.P334S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 2 170506914 170506914 C T CCDC173 Nonsense_Mutation p.W359* 0.21 TCGA-GN-A266-06 2 170917834 170917834 C T UBR3 Missense_Mutation p.P1634S 0.25 tolerated(0.65) benign(0) TCGA-GN-A266-06 2 171358335 171358335 A G MYO3B Missense_Mutation p.I1110M 0.21 tolerated(0.2) benign(0.007) TCGA-GN-A266-06 2 171702044 171702044 C T GAD1 Silent p.I260I 0.24 TCGA-GN-A266-06 2 171822366 171822366 C T GORASP2 Missense_Mutation p.S362F 0.38 deleterious(0.01) benign(0.432) TCGA-GN-A266-06 2 172700971 172700971 G A SLC25A12 Missense_Mutation p.P125S 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-GN-A266-06 2 174131021 174131021 C T MLTK Missense_Mutation p.S649F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-GN-A266-06 2 175431779 175431779 C T WIPF1 Intron 0.33 TCGA-GN-A266-06 2 175436886 175436886 C T WIPF1 Missense_Mutation p.G216E 0.17 deleterious(0.01) benign(0.439) TCGA-GN-A266-06 2 175436887 175436887 C T WIPF1 Missense_Mutation p.G216R 0.18 deleterious(0.03) possibly_damaging(0.631) TCGA-GN-A266-06 2 175612790 175612790 T A CHRNA1 3'UTR 0.40 TCGA-GN-A266-06 2 175622373 175622373 G A CHRNA1 Missense_Mutation p.P114S 0.32 deleterious(0.02) benign(0.253) TCGA-GN-A266-06 2 175677170 175677170 G A CHN1 Silent p.V251V 0.25 TCGA-GN-A266-06 2 17699657 17699657 C T RAD51AP2 Missense_Mutation p.R9Q 0.29 tolerated(0.43) benign(0.036) TCGA-GN-A266-06 2 178936631 178936631 C T PDE11A Silent p.S178S 0.30 TCGA-GN-A266-06 2 178936771 178936771 G A PDE11A Missense_Mutation p.H132Y 0.22 deleterious(0.02) benign(0.021) TCGA-GN-A266-06 2 179238682 179238682 C T OSBPL6 Silent p.S512S 0.32 TCGA-GN-A266-06 2 179395823 179395823 G A TTN Silent p.A35173A 0.16 TCGA-GN-A266-06 2 179401219 179401219 C T TTN Missense_Mutation p.D33419N 0.26 TCGA-GN-A266-06 2 179403727 179403727 C T TTN Missense_Mutation p.G32979S 0.25 TCGA-GN-A266-06 2 179404821 179404821 C T TTN Missense_Mutation p.G32691E 0.20 TCGA-GN-A266-06 2 179416365 179416365 G A TTN Missense_Mutation p.S30421F 0.21 TCGA-GN-A266-06 2 179416711 179416711 C T TTN Missense_Mutation p.G30306R 0.22 TCGA-GN-A266-06 2 179423307 179423307 G A TTN Missense_Mutation p.S28960F 0.23 TCGA-GN-A266-06 2 179424620 179424620 C T TTN Missense_Mutation p.E28747K 0.28 TCGA-GN-A266-06 2 179425679 179425679 C T TTN Missense_Mutation p.D28394N 0.27 TCGA-GN-A266-06 2 179426223 179426223 A G TTN Silent p.T28212T 0.20 TCGA-GN-A266-06 2 179428325 179428325 C T TTN Missense_Mutation p.E27512K 0.31 TCGA-GN-A266-06 2 179429354 179429354 C T TTN Missense_Mutation p.D27169N 0.45 TCGA-GN-A266-06 2 179438107 179438107 C T TTN Missense_Mutation p.G24251E 0.14 TCGA-GN-A266-06 2 179439256 179439256 C T TTN Missense_Mutation p.R23868Q 0.24 TCGA-GN-A266-06 2 179439647 179439647 C T TTN Missense_Mutation p.E23738K 0.33 TCGA-GN-A266-06 2 179456835 179456835 C T TTN Silent p.K19932K 0.17 TCGA-GN-A266-06 2 179464302 179464302 C T TTN Missense_Mutation p.E18776K 0.24 TCGA-GN-A266-06 2 179464311 179464311 C T TTN Missense_Mutation p.A18773T 0.34 TCGA-GN-A266-06 2 179465822 179465822 C T TTN Silent p.P18603P 0.24 TCGA-GN-A266-06 2 179466861 179466861 G A TTN Silent p.F18379F 0.24 TCGA-GN-A266-06 2 179477637 179477637 C T TTN Missense_Mutation p.G16604E 0.36 TCGA-GN-A266-06 2 179477893 179477893 G A TTN Missense_Mutation p.P16548L 0.19 TCGA-GN-A266-06 2 179478868 179478868 T A TTN Missense_Mutation p.K16419I 0.19 TCGA-GN-A266-06 2 179497392 179497392 G A TTN Silent p.I14447I 0.40 TCGA-GN-A266-06 2 179497712 179497712 C T TTN Silent p.L14382L 0.41 TCGA-GN-A266-06 2 179497750 179497750 C T TTN Missense_Mutation p.G14370R 0.27 TCGA-GN-A266-06 2 17950072 17950072 T G GEN1 Missense_Mutation p.L235R 0.39 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 2 179528190 179528190 G A TTN Missense_Mutation p.P12196S 0.09 TCGA-GN-A266-06 2 179534347 179534347 C T TTN Silent p.L11814L 0.32 TCGA-GN-A266-06 2 179542471 179542471 C T TTN Missense_Mutation p.E11390K 0.17 TCGA-GN-A266-06 2 179556794 179556794 C T TTN Missense_Mutation p.E10571K 0.14 TCGA-GN-A266-06 2 179569031 179569031 G A TTN Silent p.F10022F 0.30 TCGA-GN-A266-06 2 179583544 179583544 A T TTN Missense_Mutation p.L8128Q 0.37 TCGA-GN-A266-06 2 179584851 179584851 C T TTN Missense_Mutation p.E7840K 0.41 TCGA-GN-A266-06 2 179587620 179587620 C G TTN Missense_Mutation p.V7336L 0.42 TCGA-GN-A266-06 2 179590212 179590212 C T TTN Missense_Mutation p.E6907K 0.19 TCGA-GN-A266-06 2 179590236 179590236 C T TTN Missense_Mutation p.E6899K 0.16 TCGA-GN-A266-06 2 179590607 179590607 G A TTN Silent p.F6814F 0.32 TCGA-GN-A266-06 2 179590608 179590608 A T TTN Missense_Mutation p.F6814Y 0.32 TCGA-GN-A266-06 2 179592867 179592867 C T TTN Missense_Mutation p.D6562N 0.23 TCGA-GN-A266-06 2 179595338 179595338 G A TTN Silent p.A5974A 0.39 TCGA-GN-A266-06 2 179595718 179595718 C T TTN Missense_Mutation p.E5892K 0.39 TCGA-GN-A266-06 2 179603894 179603894 G A TTN Missense_Mutation p.S4689L 0.19 TCGA-GN-A266-06 2 179604785 179604785 C T TTN Missense_Mutation p.R4392K 0.22 TCGA-GN-A266-06 2 179612236 179612236 G A TTN Intron 0.31 TCGA-GN-A266-06 2 179612279 179612279 C T TTN Intron 0.32 TCGA-GN-A266-06 2 179612525 179612525 C A TTN Intron 0.24 TCGA-GN-A266-06 2 179612720 179612720 C T TTN Intron 0.37 TCGA-GN-A266-06 2 179614065 179614065 G A TTN Intron 0.40 TCGA-GN-A266-06 2 179614846 179614846 C T TTN Intron 0.31 TCGA-GN-A266-06 2 179633554 179633554 C T TTN Silent p.K3003K 0.20 TCGA-GN-A266-06 2 179637975 179637975 G A TTN Silent p.I2572I 0.56 TCGA-GN-A266-06 2 179638298 179638298 C T TTN Silent p.V2495V 0.33 TCGA-GN-A266-06 2 179638756 179638756 G A TTN Missense_Mutation p.S2380F 0.41 TCGA-GN-A266-06 2 179639836 179639836 G A TTN Missense_Mutation p.P2201L 0.28 TCGA-GN-A266-06 2 179640842 179640842 G A TTN Missense_Mutation p.P1917S 0.16 TCGA-GN-A266-06 2 179642434 179642434 C T TTN Missense_Mutation p.D1493N 0.23 TCGA-GN-A266-06 2 179647575 179647575 C T TTN Missense_Mutation p.E1020K 0.33 TCGA-GN-A266-06 2 179701784 179701784 G A CCDC141 Missense_Mutation p.P1388S 0.30 tolerated(0.53) benign(0.052) TCGA-GN-A266-06 2 179702064 179702064 G A CCDC141 Silent p.F1294F 0.21 TCGA-GN-A266-06 2 179702380 179702380 C T CCDC141 Missense_Mutation p.G1189D 0.29 tolerated(1) benign(0.004) TCGA-GN-A266-06 2 182350645 182350645 G A ITGA4 Missense_Mutation p.G360E 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 182399556 182399556 G A ITGA4 Missense_Mutation p.G966E 0.26 deleterious(0) probably_damaging(0.989) TCGA-GN-A266-06 2 182412563 182412563 C T CERKL Missense_Mutation p.G408E 0.25 tolerated(0.32) benign(0.003) TCGA-GN-A266-06 2 184016308 184016308 C T NUP35 Missense_Mutation p.P157L 0.24 deleterious(0) possibly_damaging(0.856) TCGA-GN-A266-06 2 185798363 185798363 C T ZNF804A Nonsense_Mutation p.R97* 0.23 TCGA-GN-A266-06 2 185803517 185803517 C T ZNF804A Missense_Mutation p.L1132F 0.17 deleterious(0.05) benign(0.424) TCGA-GN-A266-06 2 186671598 186671598 C T FSIP2 Silent p.F5944F 0.28 TCGA-GN-A266-06 2 186672248 186672248 C T FSIP2 Missense_Mutation p.T6161I 0.17 benign(0.152) TCGA-GN-A266-06 2 186672268 186672268 G A FSIP2 Missense_Mutation p.E6168K 0.40 probably_damaging(0.999) TCGA-GN-A266-06 2 187626444 187626444 G A FAM171B Missense_Mutation p.D459N 0.37 tolerated(1) benign(0) TCGA-GN-A266-06 2 187626958 187626958 C T FAM171B Missense_Mutation p.S630F 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 187627133 187627133 C T FAM171B Silent p.S688S 0.16 TCGA-GN-A266-06 2 187693180 187693180 G A ZSWIM2 Missense_Mutation p.S478L 0.28 tolerated(0.06) benign(0.036) TCGA-GN-A266-06 2 189599660 189599660 G A DIRC1 5'UTR 0.24 TCGA-GN-A266-06 2 189863020 189863020 G A COL3A1 Missense_Mutation p.G651E 0.26 unknown(0) TCGA-GN-A266-06 2 189904202 189904202 C T COL5A2 Missense_Mutation p.D1241N 0.19 unknown(0) TCGA-GN-A266-06 2 189936776 189936776 G A COL5A2 Missense_Mutation p.P383L 0.41 probably_damaging(0.993) TCGA-GN-A266-06 2 192700913 192700913 G A SDPR Silent p.S338S 0.34 TCGA-GN-A266-06 2 192701319 192701319 G A SDPR Missense_Mutation p.S203F 0.23 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 2 196581636 196581636 G A SLC39A10 Missense_Mutation p.G658R 0.46 tolerated(0.31) probably_damaging(0.997) TCGA-GN-A266-06 2 196651834 196651834 C T DNAH7 Missense_Mutation p.R3593Q 0.36 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 2 196659083 196659083 G A DNAH7 Silent p.F3565F 0.46 TCGA-GN-A266-06 2 196681402 196681402 A G DNAH7 Silent p.L3237L 0.11 TCGA-GN-A266-06 2 196749415 196749415 C T DNAH7 Missense_Mutation p.R1886Q 0.24 tolerated(0.24) benign(0.001) TCGA-GN-A266-06 2 196851790 196851790 C T DNAH7 Missense_Mutation p.R585K 0.35 tolerated(0.92) benign(0.001) TCGA-GN-A266-06 2 197122610 197122610 C T HECW2 Missense_Mutation p.R1119Q 0.22 deleterious(0) possibly_damaging(0.725) TCGA-GN-A266-06 2 197182016 197182016 C T HECW2 Missense_Mutation p.D806N 0.21 deleterious(0.01) possibly_damaging(0.493) TCGA-GN-A266-06 2 197182092 197182092 A G HECW2 Silent p.G780G 0.36 TCGA-GN-A266-06 2 197184551 197184551 C T HECW2 Missense_Mutation p.E355K 0.24 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-GN-A266-06 2 197540974 197540974 C T CCDC150 Silent p.T415T 0.25 TCGA-GN-A266-06 2 197712665 197712665 A G PGAP1 Intron 0.15 TCGA-GN-A266-06 2 1983498 1983498 G A MYT1L Nonsense_Mutation p.R18* 0.62 TCGA-GN-A266-06 2 201284121 201284121 C T SPATS2L Missense_Mutation p.S116L 0.30 deleterious(0.02) benign(0.218) TCGA-GN-A266-06 2 201488607 201488607 C T AOX1 Silent p.V675V 0.22 TCGA-GN-A266-06 2 20194161 20194161 T G MATN3 Missense_Mutation p.E435A 0.53 deleterious(0.02) possibly_damaging(0.471) TCGA-GN-A266-06 2 202065209 202065209 C T CASP10 Intron 0.25 TCGA-GN-A266-06 2 202093881 202093881 G A CASP10 3'UTR 0.20 TCGA-GN-A266-06 2 202469367 202469367 C T ALS2CR11 Silent p.Q95Q 0.34 TCGA-GN-A266-06 2 202617878 202617878 C T ALS2 Silent p.A576A 0.34 TCGA-GN-A266-06 2 203420895 203420895 C T BMPR2 Missense_Mutation p.T836I 0.40 tolerated(0.12) benign(0.008) TCGA-GN-A266-06 2 203680719 203680719 C T ICA1L Missense_Mutation p.G233E 0.23 tolerated(0.21) benign(0.29) TCGA-GN-A266-06 2 203980784 203980784 C T NBEAL1 Silent p.Y832Y 0.24 TCGA-GN-A266-06 2 204031988 204031988 C T NBEAL1 Nonsense_Mutation p.R1939* 0.34 TCGA-GN-A266-06 2 206165305 206165305 C T PARD3B Missense_Mutation p.S684F 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 206580992 206580992 C T NRP2 Silent p.A109A 0.40 TCGA-GN-A266-06 2 206608234 206608234 G A NRP2 Silent p.K533K 0.43 TCGA-GN-A266-06 2 206608235 206608235 G A NRP2 Missense_Mutation p.D534N 0.43 tolerated(0.1) benign(0.015) TCGA-GN-A266-06 2 207170939 207170939 C T ZDBF2 Missense_Mutation p.R563W 0.38 tolerated(0.34) probably_damaging(0.919) TCGA-GN-A266-06 2 207171060 207171060 G A ZDBF2 Missense_Mutation p.R603K 0.19 tolerated(0.41) benign(0.267) TCGA-GN-A266-06 2 207171359 207171359 C T ZDBF2 Missense_Mutation p.R703C 0.41 deleterious(0.04) benign(0.081) TCGA-GN-A266-06 2 207460839 207460839 G A ADAM23 Missense_Mutation p.R771Q 0.27 tolerated(0.28) benign(0.098) TCGA-GN-A266-06 2 207482369 207482369 G A ADAM23 3'UTR 0.26 TCGA-GN-A266-06 2 207572096 207572096 C T DYTN Missense_Mutation p.E76K 0.22 tolerated(0.1) benign(0.063) TCGA-GN-A266-06 2 207630006 207630006 G A MDH1B 5'UTR 0.36 TCGA-GN-A266-06 2 207655359 207655359 C T FASTKD2 Silent p.F654F 0.39 TCGA-GN-A266-06 2 208725854 208725854 G A PLEKHM3 Missense_Mutation p.P695S 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 209353869 209353869 C T PTH2R Silent p.S403S 0.33 TCGA-GN-A266-06 2 211070512 211070512 G A ACADL Silent p.I204I 0.35 TCGA-GN-A266-06 2 211158512 211158512 T A MYL1 Missense_Mutation p.K164I 0.34 deleterious(0) possibly_damaging(0.564) TCGA-GN-A266-06 2 21230014 21230014 G A APOB Silent p.L3242L 0.26 TCGA-GN-A266-06 2 21230037 21230037 C T APOB Missense_Mutation p.A3235T 0.38 benign(0.013) TCGA-GN-A266-06 2 21230801 21230801 G A APOB Missense_Mutation p.S2980F 0.21 benign(0) TCGA-GN-A266-06 2 21233505 21233505 C T APOB Missense_Mutation p.E2079K 0.24 benign(0.018) TCGA-GN-A266-06 2 21234337 21234337 C T APOB Silent p.L1801L 0.21 TCGA-GN-A266-06 2 21245816 21245816 C T APOB Missense_Mutation p.M901I 0.37 probably_damaging(0.977) TCGA-GN-A266-06 2 21246531 21246531 C T APOB Missense_Mutation p.D824N 0.38 probably_damaging(0.999) TCGA-GN-A266-06 2 212652858 212652858 C T ERBB4 Missense_Mutation p.D150N 0.14 tolerated(0.27) benign(0.006) TCGA-GN-A266-06 2 214149357 214149357 G A SPAG16 Intron 0.17 TCGA-GN-A266-06 2 214354720 214354720 C T SPAG16 Missense_Mutation p.P326S 0.25 tolerated(0.11) benign(0.39) TCGA-GN-A266-06 2 215278933 215278933 C T VWC2L Missense_Mutation p.H6Y 0.36 tolerated_low_confidence(0.19) benign(0.101) TCGA-GN-A266-06 2 215279299 215279299 G A VWC2L Missense_Mutation p.E128K 0.15 deleterious(0.04) probably_damaging(0.969) TCGA-GN-A266-06 2 215819948 215819948 G A ABCA12 Missense_Mutation p.S2124F 0.23 tolerated(0.09) probably_damaging(0.949) TCGA-GN-A266-06 2 215833510 215833510 C T ABCA12 Silent p.G1904G 0.33 TCGA-GN-A266-06 2 215843674 215843674 C T ABCA12 Missense_Mutation p.D1611N 0.26 tolerated(0.27) possibly_damaging(0.861) TCGA-GN-A266-06 2 215845252 215845252 C T ABCA12 Silent p.K1565K 0.35 TCGA-GN-A266-06 2 215872484 215872484 G A ABCA12 Silent p.F853F 0.27 TCGA-GN-A266-06 2 218669209 218669209 G A TNS1 Silent p.V1727V 0.21 TCGA-GN-A266-06 2 219000175 219000175 C T CXCR2 Silent p.S217S 0.28 TCGA-GN-A266-06 2 219561890 219561890 C T STK36 Silent p.S905S 0.21 TCGA-GN-A266-06 2 219612839 219612839 C T TTLL4 Missense_Mutation p.S797F 0.29 deleterious(0.01) possibly_damaging(0.903) TCGA-GN-A266-06 2 219868879 219868879 C T CCDC108 Missense_Mutation p.E1784K 0.21 tolerated(0.24) unknown(0) TCGA-GN-A266-06 2 219868948 219868948 C T CCDC108 Missense_Mutation p.E1761K 0.26 tolerated(0.83) unknown(0) TCGA-GN-A266-06 2 220168539 220168539 C T PTPRN Missense_Mutation p.D99N 0.43 deleterious(0.02) possibly_damaging(0.796) TCGA-GN-A266-06 2 220332071 220332071 C T SPEG Silent p.F1019F 0.19 TCGA-GN-A266-06 2 220422727 220422727 G A OBSL1 Missense_Mutation p.P1203L 0.35 tolerated(0.32) benign(0.02) TCGA-GN-A266-06 2 222301175 222301175 C T EPHA4 Missense_Mutation p.D764N 0.22 deleterious(0.02) probably_damaging(0.957) TCGA-GN-A266-06 2 222365816 222365816 G A EPHA4 Silent p.V300V 0.34 TCGA-GN-A266-06 2 223499232 223499232 G A FARSB Missense_Mutation p.H162Y 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 224822312 224822312 C T MRPL44 Silent p.F41F 0.18 TCGA-GN-A266-06 2 224828523 224828523 G C MRPL44 Missense_Mutation p.K233N 0.47 tolerated(0.46) benign(0.003) TCGA-GN-A266-06 2 226447249 226447249 G A NYAP2 Missense_Mutation p.M372I 0.67 tolerated(0.29) benign(0) TCGA-GN-A266-06 2 226516185 226516185 G A NYAP2 Silent p.S622S 0.10 TCGA-GN-A266-06 2 227872289 227872289 C T COL4A4 Missense_Mutation p.D1609N 0.20 unknown(0) TCGA-GN-A266-06 2 227898195 227898195 G T COL4A4 Missense_Mutation p.P1170T 0.27 unknown(0) TCGA-GN-A266-06 2 227907822 227907822 G A COL4A4 Missense_Mutation p.P1123L 0.34 unknown(0) TCGA-GN-A266-06 2 227954672 227954672 C T COL4A4 Silent p.V457V 0.44 TCGA-GN-A266-06 2 228122341 228122341 C T COL4A3 Missense_Mutation p.P337L 0.16 possibly_damaging(0.449) TCGA-GN-A266-06 2 228157935 228157935 G A COL4A3 Missense_Mutation p.G1080E 0.27 unknown(0) TCGA-GN-A266-06 2 228169791 228169791 G A COL4A3 Missense_Mutation p.G1415E 0.31 unknown(0) TCGA-GN-A266-06 2 228769694 228769694 G A DAW1 Missense_Mutation p.R233K 0.34 tolerated(0.4) benign(0.029) TCGA-GN-A266-06 2 228856032 228856032 C T SPHKAP Missense_Mutation p.E1578K 0.32 deleterious(0.01) probably_damaging(0.911) TCGA-GN-A266-06 2 228883574 228883574 C T SPHKAP Missense_Mutation p.E666K 0.38 tolerated(0.07) benign(0.178) TCGA-GN-A266-06 2 228883655 228883655 A G SPHKAP Missense_Mutation p.F639L 0.44 tolerated(1) benign(0.004) TCGA-GN-A266-06 2 228883656 228883656 G A SPHKAP Silent p.D638D 0.42 TCGA-GN-A266-06 2 228884334 228884334 G A SPHKAP Silent p.S412S 0.36 TCGA-GN-A266-06 2 229890656 229890656 C T PID1 Missense_Mutation p.D147N 0.20 deleterious(0.01) probably_damaging(0.966) TCGA-GN-A266-06 2 230312072 230312072 G A DNER Silent p.C482C 0.15 TCGA-GN-A266-06 2 231090512 231090512 G A SP140 5'UTR 0.27 TCGA-GN-A266-06 2 231102958 231102958 C T SP140 Missense_Mutation p.P90S 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 2 231742769 231742769 C T ITM2C Silent p.F253F 0.27 TCGA-GN-A266-06 2 233243480 233243480 C T ALPP 5'UTR 0.20 TCGA-GN-A266-06 2 233272048 233272048 G A ALPPL2 Silent p.K79K 0.09 TCGA-GN-A266-06 2 233272049 233272049 G A ALPPL2 Missense_Mutation p.D80N 0.09 tolerated(0.22) benign(0) TCGA-GN-A266-06 2 233346544 233346544 C T ECEL1 Silent p.G604G 0.19 TCGA-GN-A266-06 2 233735109 233735109 C T C2orf82 Missense_Mutation p.P20S 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-GN-A266-06 2 233898940 233898940 C T NEU2 Missense_Mutation p.P106S 0.36 tolerated(0.19) benign(0.285) TCGA-GN-A266-06 2 233925234 233925234 G A INPP5D Missense_Mutation p.E16K 0.25 deleterious(0) possibly_damaging(0.568) TCGA-GN-A266-06 2 234527080 234527080 G A UGT1A8 Missense_Mutation p.D243N 0.39 deleterious(0.01) possibly_damaging(0.777) TCGA-GN-A266-06 2 234546024 234546024 G A UGT1A10 Splice_Site p.X285_splice 0.38 TCGA-GN-A266-06 2 234622403 234622403 C T UGT1A5 Silent p.L256L 0.36 TCGA-GN-A266-06 2 238242165 238242165 G A COL6A3 Missense_Mutation p.P3086S 0.38 unknown(0) TCGA-GN-A266-06 2 238303252 238303252 C T COL6A3 Silent p.T229T 0.34 TCGA-GN-A266-06 2 239038790 239038790 C T ESPNL Missense_Mutation p.P479S 0.19 tolerated(0.28) benign(0.007) TCGA-GN-A266-06 2 242078169 242078169 G A PASK Missense_Mutation p.S214F 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 24522854 24522854 T A ITSN2 Missense_Mutation p.E423V 0.14 deleterious(0.02) unknown(0) TCGA-GN-A266-06 2 25965600 25965600 G A ASXL2 Silent p.S1202S 0.28 TCGA-GN-A266-06 2 26151896 26151896 G A KIF3C Missense_Mutation p.S778F 0.35 benign(0.03) TCGA-GN-A266-06 2 26676293 26676293 G A DRC1 Missense_Mutation p.E599K 0.34 tolerated(0.74) benign(0.004) TCGA-GN-A266-06 2 27373152 27373152 C T TCF23 Silent p.L128L 0.17 TCGA-GN-A266-06 2 27528634 27528634 G A TRIM54 Silent p.V306V 0.33 TCGA-GN-A266-06 2 27560827 27560827 G A GTF3C2 Missense_Mutation p.P306S 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 2 27591996 27591996 C T EIF2B4 Missense_Mutation p.E119K 0.41 deleterious(0.04) possibly_damaging(0.618) TCGA-GN-A266-06 2 27799442 27799442 G A C2orf16 Translation_Start_Site p.M1? 0.38 tolerated(0.14) benign(0.004) TCGA-GN-A266-06 2 27844028 27844028 C T ZNF512 Silent p.F468F 0.43 TCGA-GN-A266-06 2 28761181 28761181 C T PLB1 Intron 0.28 TCGA-GN-A266-06 2 28849349 28849349 G A PLB1 Missense_Mutation p.D1212N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 2 28855815 28855815 G A PLB1 Missense_Mutation p.G1336E 0.30 deleterious(0.01) possibly_damaging(0.651) TCGA-GN-A266-06 2 29245121 29245121 G A FAM179A Silent p.S486S 0.38 TCGA-GN-A266-06 2 29274906 29274906 G A FAM179A Missense_Mutation p.V1003M 0.11 tolerated_low_confidence(0.4) benign(0.002) TCGA-GN-A266-06 2 29356663 29356663 G A CLIP4 Silent p.L170L 0.23 TCGA-GN-A266-06 2 29397296 29397296 G A CLIP4 Missense_Mutation p.R594K 0.36 tolerated(0.43) benign(0.008) TCGA-GN-A266-06 2 29754810 29754810 G A ALK Silent p.I375I 0.24 TCGA-GN-A266-06 2 30954238 30954238 C T CAPN13 Missense_Mutation p.G652E 0.38 deleterious(0) probably_damaging(0.968) TCGA-GN-A266-06 2 30966371 30966371 G A CAPN13 Silent p.F441F 0.20 TCGA-GN-A266-06 2 30976012 30976012 C T CAPN13 Missense_Mutation p.E332K 0.17 tolerated(0.13) benign(0.017) TCGA-GN-A266-06 2 31483545 31483545 C T EHD3 Silent p.I224I 0.33 TCGA-GN-A266-06 2 31595189 31595189 G A XDH Silent p.A587A 0.20 TCGA-GN-A266-06 2 31596751 31596751 G A XDH Silent p.V558V 0.19 TCGA-GN-A266-06 2 31600069 31600069 C T XDH Missense_Mutation p.R426Q 0.25 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 2 32474890 32474890 C T NLRC4 Silent p.G681G 0.23 TCGA-GN-A266-06 2 32476179 32476179 C T NLRC4 Missense_Mutation p.E252K 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 32481898 32481898 C T NLRC4 5'UTR 0.45 TCGA-GN-A266-06 2 32726811 32726811 A T BIRC6 Missense_Mutation p.E3021D 0.15 benign(0.28) TCGA-GN-A266-06 2 33540282 33540282 C T LTBP1 Missense_Mutation p.H1226Y 0.34 tolerated(0.36) possibly_damaging(0.723) TCGA-GN-A266-06 2 3428392 3428392 C T TRAPPC12 Missense_Mutation p.L459F 0.20 deleterious(0) possibly_damaging(0.878) TCGA-GN-A266-06 2 36737231 36737231 C G CRIM1 Missense_Mutation p.P536R 0.13 tolerated(0.05) probably_damaging(0.994) TCGA-GN-A266-06 2 36982190 36982190 C T VIT Silent p.I134I 0.15 TCGA-GN-A266-06 2 37395156 37395156 C T SULT6B1 Missense_Mutation p.M240I 0.23 deleterious(0.05) possibly_damaging(0.836) TCGA-GN-A266-06 2 39088456 39088456 G A DHX57 Missense_Mutation p.P366S 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 39222341 39222341 G A SOS1 Missense_Mutation p.P1090L 0.43 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 2 39222477 39222477 G A SOS1 Missense_Mutation p.P1045S 0.34 tolerated(0.91) benign(0) TCGA-GN-A266-06 2 43625251 43625251 G A THADA Silent p.S1362S 0.21 TCGA-GN-A266-06 2 45235712 45235712 G A SIX2 Missense_Mutation p.R180W 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 45235713 45235713 G A SIX2 Silent p.D179D 0.33 TCGA-GN-A266-06 2 48818932 48818932 G A STON1-GTF2A1L Missense_Mutation p.G691R 0.55 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 48915500 48915500 C T LHCGR Missense_Mutation p.R479Q 0.12 tolerated(0.21) benign(0.192) TCGA-GN-A266-06 2 48915774 48915774 G A LHCGR Missense_Mutation p.R388C 0.37 deleterious(0) possibly_damaging(0.901) TCGA-GN-A266-06 2 49190763 49190763 G A FSHR Silent p.F399F 0.39 TCGA-GN-A266-06 2 51254720 51254720 C T NRXN1 Missense_Mutation p.G231E 0.71 deleterious(0.01) probably_damaging(0.966) TCGA-GN-A266-06 2 51255007 51255007 G A NRXN1 Silent p.A135A 0.29 TCGA-GN-A266-06 2 51255121 51255121 G A NRXN1 Silent p.C97C 0.31 TCGA-GN-A266-06 2 54081898 54081898 G A GPR75 5'UTR 0.30 TCGA-GN-A266-06 2 54081899 54081899 G A GPR75 5'UTR 0.29 TCGA-GN-A266-06 2 54858619 54858619 G A SPTBN1 Silent p.Q1145Q 0.15 TCGA-GN-A266-06 2 56097878 56097878 C T EFEMP1 Missense_Mutation p.E433K 0.29 deleterious(0.02) possibly_damaging(0.873) TCGA-GN-A266-06 2 56104905 56104905 C T EFEMP1 Missense_Mutation p.A246T 0.23 tolerated(0.15) possibly_damaging(0.883) TCGA-GN-A266-06 2 56420143 56420143 C T CCDC85A Missense_Mutation p.R270C 0.18 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-GN-A266-06 2 60688386 60688386 G A BCL11A Missense_Mutation p.S554F 0.21 deleterious(0.01) possibly_damaging(0.608) TCGA-GN-A266-06 2 65217269 65217269 C T SLC1A4 Silent p.P164P 0.26 TCGA-GN-A266-06 2 69093240 69093240 C T BMP10 Silent p.R266R 0.41 TCGA-GN-A266-06 2 69173445 69173445 C T GKN2 Missense_Mutation p.E155K 0.30 tolerated(0.48) benign(0.02) TCGA-GN-A266-06 2 69173457 69173457 C A GKN2 Missense_Mutation p.G151W 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-GN-A266-06 2 69201798 69201798 C T GKN1 Missense_Mutation p.R11C 0.30 tolerated(0.14) benign(0) TCGA-GN-A266-06 2 69206105 69206105 G A GKN1 Missense_Mutation p.E117K 0.16 tolerated(0.13) benign(0.284) TCGA-GN-A266-06 2 70188488 70188488 G A ASPRV1 Silent p.V111V 0.40 TCGA-GN-A266-06 2 70742001 70742001 G A TGFA Silent p.S28S 0.19 TCGA-GN-A266-06 2 70901819 70901819 C T ADD2 Missense_Mutation p.E578K 0.16 tolerated(0.16) benign(0.038) TCGA-GN-A266-06 2 71061125 71061125 C T CD207 Missense_Mutation p.D73N 0.38 tolerated(0.35) benign(0.055) TCGA-GN-A266-06 2 71650425 71650425 G A ZNF638 Missense_Mutation p.A1261T 0.23 tolerated(0.14) benign(0.003) TCGA-GN-A266-06 2 71741043 71741043 G A DYSF Missense_Mutation p.D251N 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-GN-A266-06 2 71913658 71913658 C T DYSF 3'UTR 0.36 TCGA-GN-A266-06 2 73315857 73315857 G A RAB11FIP5 Missense_Mutation p.P297S 0.62 tolerated(0.09) probably_damaging(0.998) TCGA-GN-A266-06 2 73490898 73490898 G A FBXO41 Silent p.I661I 0.33 TCGA-GN-A266-06 2 74043271 74043271 G A C2orf78 Missense_Mutation p.G641R 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 2 74598741 74598741 G A DCTN1 Missense_Mutation p.P190S 0.55 tolerated(0.3) benign(0.02) TCGA-GN-A266-06 2 74707920 74707920 G A CCDC142 Silent p.I486I 0.20 TCGA-GN-A266-06 2 74720195 74720195 C T TTC31 Silent p.L470L 0.27 TCGA-GN-A266-06 2 74834197 74834197 C T M1AP Missense_Mutation p.D194N 0.37 deleterious(0.03) benign(0.221) TCGA-GN-A266-06 2 79349191 79349191 G A REG1A Silent p.L87L 0.24 TCGA-GN-A266-06 2 79384262 79384262 G A REG3A 3'UTR 0.50 TCGA-GN-A266-06 2 80136838 80136838 G A CTNNA2 Missense_Mutation p.R324Q 0.12 deleterious(0) possibly_damaging(0.858) TCGA-GN-A266-06 2 80816456 80816456 G A CTNNA2 Missense_Mutation p.E679K 0.54 deleterious(0.01) benign(0.287) TCGA-GN-A266-06 2 80874853 80874853 G A CTNNA2 Nonsense_Mutation p.W858* 0.39 TCGA-GN-A266-06 2 84811170 84811170 G A DNAH6 Silent p.K759K 0.32 TCGA-GN-A266-06 2 85059191 85059191 C T TRABD2A Missense_Mutation p.R308Q 0.14 tolerated(1) benign(0.015) TCGA-GN-A266-06 2 85097394 85097394 C T TRABD2A Silent p.K208K 0.22 TCGA-GN-A266-06 2 85872198 85872198 C T USP39 Missense_Mutation p.L519F 0.24 tolerated(0.48) probably_damaging(0.93) TCGA-GN-A266-06 2 86709633 86709633 C T KDM3A Missense_Mutation p.S913F 0.12 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 2 87017743 87017743 C T CD8A Silent p.E37E 0.37 TCGA-GN-A266-06 2 88396129 88396129 C T SMYD1 Silent p.A238A 0.17 TCGA-GN-A266-06 2 89156946 89156946 G A IGKC Silent p.V84V 0.18 TCGA-GN-A266-06 2 89384844 89384844 C T IGKV3-15 Silent p.Q58Q 0.36 TCGA-GN-A266-06 2 89442596 89442596 C T IGKV3-20 5'UTR 0.23 TCGA-GN-A266-06 2 89513063 89513063 G A IGKV1-27 Missense_Mutation p.P66S 0.23 deleterious(0.01) possibly_damaging(0.886) TCGA-GN-A266-06 2 89544305 89544305 C T IGKV2-30 Missense_Mutation p.D107N 0.13 deleterious(0.02) probably_damaging(0.951) TCGA-GN-A266-06 2 89544463 89544463 C T IGKV2-30 Missense_Mutation p.G54E 0.35 deleterious(0.02) benign(0.105) TCGA-GN-A266-06 2 89619805 89619805 C T IGKV1-39 Missense_Mutation p.R18Q 0.62 tolerated(0.19) benign(0.001) TCGA-GN-A266-06 2 90121860 90121860 G A IGKV1D-17 Missense_Mutation p.M26I 0.13 deleterious(0.02) benign(0.125) TCGA-GN-A266-06 2 90139140 90139140 C T IGKV1D-16 Silent p.L12L 0.16 TCGA-GN-A266-06 2 90249257 90249257 T A IGKV1D-43 Nonsense_Mutation p.Y71* 0.21 TCGA-GN-A266-06 2 9517083 9517083 G T ASAP2 Missense_Mutation p.R598L 0.14 deleterious(0.01) possibly_damaging(0.861) TCGA-GN-A266-06 2 95541342 95541342 G A TEKT4 Missense_Mutation p.E316K 0.42 tolerated(0.06) possibly_damaging(0.649) TCGA-GN-A266-06 2 95943211 95943211 G A PROM2 Missense_Mutation p.R291Q 0.36 tolerated(0.17) possibly_damaging(0.527) TCGA-GN-A266-06 2 96781379 96781379 G T ADRA2B Silent p.A170A 0.24 TCGA-GN-A266-06 2 96781380 96781380 G A ADRA2B Missense_Mutation p.A170V 0.24 tolerated(0.07) benign(0.042) TCGA-GN-A266-06 2 96789922 96789922 C T ASTL Silent p.R321R 0.28 TCGA-GN-A266-06 2 96789975 96789975 G A ASTL Missense_Mutation p.P304S 0.35 tolerated_low_confidence(0.11) benign(0.015) TCGA-GN-A266-06 2 96944689 96944689 G A SNRNP200 Silent p.H1727H 0.19 TCGA-GN-A266-06 2 97216893 97216893 G T ARID5A Nonsense_Mutation p.E210* 0.12 TCGA-GN-A266-06 2 98737762 98737762 G A VWA3B Silent p.R181R 0.36 TCGA-GN-A266-06 2 98744761 98744761 C T VWA3B Silent p.L254L 0.36 TCGA-GN-A266-06 2 98928323 98928323 C T VWA3B Missense_Mutation p.P1188L 0.18 deleterious_low_confidence(0.01) benign(0.421) TCGA-GN-A266-06 2 98996729 98996729 C T CNGA3 Missense_Mutation p.R103C 0.36 deleterious(0.04) possibly_damaging(0.556) TCGA-GN-A266-06 2 98996810 98996810 G A CNGA3 Missense_Mutation p.G130R 0.47 tolerated(0.24) benign(0.197) TCGA-GN-A266-06 2 99907775 99907775 G A LYG1 Silent p.I86I 0.47 TCGA-GN-A266-06 3 100277280 100277280 G A TMEM45A Silent p.R145R 0.11 TCGA-GN-A266-06 3 100962396 100962396 G A IMPG2 Silent p.L927L 0.26 TCGA-GN-A266-06 3 102153984 102153984 G A ZPLD1 Missense_Mutation p.R9K 0.30 tolerated_low_confidence(1) benign(0) TCGA-GN-A266-06 3 102153992 102153992 G A ZPLD1 Missense_Mutation p.D12N 0.27 tolerated_low_confidence(0.56) benign(0) TCGA-GN-A266-06 3 10219700 10219700 G A IRAK2 Silent p.L91L 0.31 TCGA-GN-A266-06 3 10255055 10255055 G A IRAK2 Silent p.G231G 0.31 TCGA-GN-A266-06 3 10276308 10276308 C T IRAK2 Silent p.L480L 0.41 TCGA-GN-A266-06 3 10381990 10381990 G A ATP2B2 Missense_Mutation p.P1058L 0.36 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 3 107096817 107096817 C T CCDC54 Missense_Mutation p.S128F 0.33 deleterious(0.05) benign(0.15) TCGA-GN-A266-06 3 108568024 108568024 G A TRAT1 Missense_Mutation p.E76K 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 108568080 108568080 G A TRAT1 Silent p.Q94Q 0.25 TCGA-GN-A266-06 3 108682323 108682323 A C MORC1 Missense_Mutation p.S913A 0.21 tolerated(0.15) benign(0.001) TCGA-GN-A266-06 3 108682324 108682324 G A MORC1 Silent p.I912I 0.21 TCGA-GN-A266-06 3 109049513 109049513 C T DPPA4 Silent p.L179L 0.23 TCGA-GN-A266-06 3 10974875 10974875 C T SLC6A11 Silent p.A470A 0.14 TCGA-GN-A266-06 3 11059648 11059648 C T SLC6A1 Missense_Mutation p.P120S 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A266-06 3 111313022 111313022 C T ZBED2 Silent p.E9E 0.27 TCGA-GN-A266-06 3 111632319 111632319 G A PHLDB2 Missense_Mutation p.E497K 0.30 deleterious(0) benign(0.14) TCGA-GN-A266-06 3 111844080 111844080 G C GCSAM Missense_Mutation p.P73R 0.12 tolerated(0.07) benign(0.246) TCGA-GN-A266-06 3 111849278 111849278 G A GCSAM Intron 0.18 TCGA-GN-A266-06 3 112190185 112190185 C T BTLA Missense_Mutation p.E141K 0.37 tolerated(0.45) benign(0.052) TCGA-GN-A266-06 3 112998267 112998267 C T BOC Missense_Mutation p.S662L 0.12 tolerated(0.2) probably_damaging(1) TCGA-GN-A266-06 3 11302062 11302062 G A HRH1 Missense_Mutation p.E447K 0.12 tolerated(0.28) benign(0.41) TCGA-GN-A266-06 3 113634601 113634601 C T GRAMD1C Missense_Mutation p.H336Y 0.19 deleterious(0) possibly_damaging(0.501) TCGA-GN-A266-06 3 113676663 113676663 G A ZDHHC23 Intron 0.22 TCGA-GN-A266-06 3 113772443 113772443 C T KIAA1407 Splice_Site p.X43_splice 0.14 TCGA-GN-A266-06 3 113772444 113772444 C T KIAA1407 Silent p.K43K 0.14 TCGA-GN-A266-06 3 11389500 11389500 C T ATG7 Silent p.F425F 0.13 TCGA-GN-A266-06 3 114014666 114014666 C G TIGIT Silent p.T112T 0.21 TCGA-GN-A266-06 3 119156934 119156934 G A TMEM39A Missense_Mutation p.P198S 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A266-06 3 119165876 119165876 G A TMEM39A Silent p.F188F 0.17 TCGA-GN-A266-06 3 119427482 119427482 C T MAATS1 Missense_Mutation p.P135L 0.27 deleterious(0.01) benign(0.373) TCGA-GN-A266-06 3 121126146 121126146 G A STXBP5L Missense_Mutation p.G906S 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 3 121341093 121341093 C T FBXO40 Nonsense_Mutation p.Q273* 0.26 TCGA-GN-A266-06 3 121341642 121341642 C T FBXO40 Missense_Mutation p.H456Y 0.25 tolerated(0.13) benign(0.046) TCGA-GN-A266-06 3 121341815 121341815 C T FBXO40 Silent p.L513L 0.28 TCGA-GN-A266-06 3 121613360 121613360 C T SLC15A2 Missense_Mutation p.L13F 0.30 deleterious_low_confidence(0.05) benign(0.027) TCGA-GN-A266-06 3 121643813 121643813 C T SLC15A2 Missense_Mutation p.L353F 0.19 deleterious(0) probably_damaging(0.982) TCGA-GN-A266-06 3 121658222 121658222 G A SLC15A2 Nonsense_Mutation p.W596* 0.42 TCGA-GN-A266-06 3 121838409 121838409 C T CD86 3'UTR 0.47 TCGA-GN-A266-06 3 121981057 121981057 G A CASR Missense_Mutation p.R392Q 0.46 tolerated(0.14) possibly_damaging(0.526) TCGA-GN-A266-06 3 122003444 122003444 C T CASR Silent p.F891F 0.50 TCGA-GN-A266-06 3 12208783 12208783 C T SYN2 RNA 0.24 TCGA-GN-A266-06 3 123022947 123022947 G A ADCY5 Silent p.I842I 0.30 TCGA-GN-A266-06 3 123376184 123376184 C T MYLK Silent p.G1359G 0.18 TCGA-GN-A266-06 3 123419455 123419455 G A MYLK Missense_Mutation p.R954C 0.32 deleterious(0) benign(0.007) TCGA-GN-A266-06 3 123451915 123451915 G A MYLK Silent p.F448F 0.30 TCGA-GN-A266-06 3 123452711 123452711 G A MYLK Missense_Mutation p.R378C 0.23 tolerated(0.08) possibly_damaging(0.501) TCGA-GN-A266-06 3 123633917 123633917 G A CCDC14 Silent p.L816L 0.23 TCGA-GN-A266-06 3 123946890 123946890 G A KALRN Missense_Mutation p.E41K 0.16 deleterious(0) probably_damaging(0.97) TCGA-GN-A266-06 3 123946904 123946904 C T KALRN Silent p.F45F 0.29 TCGA-GN-A266-06 3 123987907 123987907 C T KALRN Silent p.I256I 0.30 TCGA-GN-A266-06 3 124153247 124153247 G A KALRN Missense_Mutation p.D973N 0.33 tolerated(0.07) benign(0.213) TCGA-GN-A266-06 3 124181432 124181432 A T KALRN Missense_Mutation p.E1326V 0.30 deleterious(0) possibly_damaging(0.494) TCGA-GN-A266-06 3 124351433 124351433 G A KALRN Silent p.G84G 0.30 TCGA-GN-A266-06 3 124456812 124456812 C T UMPS Silent p.I236I 0.10 TCGA-GN-A266-06 3 124642454 124642454 G A MUC13 Missense_Mutation p.S185L 0.30 deleterious(0) probably_damaging(0.951) TCGA-GN-A266-06 3 124802800 124802800 G A SLC12A8 Silent p.F693F 0.31 TCGA-GN-A266-06 3 125850269 125850269 G A ALDH1L1 Silent p.I537I 0.36 TCGA-GN-A266-06 3 125879750 125879750 C T ALDH1L1 Missense_Mutation p.E35K 0.32 tolerated_low_confidence(0.41) benign(0.005) TCGA-GN-A266-06 3 12623862 12623862 G A MKRN2 3'UTR 0.21 TCGA-GN-A266-06 3 126270914 126270914 G A C3orf22 Silent p.V47V 0.24 TCGA-GN-A266-06 3 126723967 126723967 C T PLXNA1 Missense_Mutation p.S593L 0.29 deleterious(0.03) benign(0.002) TCGA-GN-A266-06 3 127358261 127358261 C T PODXL2 Missense_Mutation p.P82S 0.25 tolerated(0.17) benign(0.01) TCGA-GN-A266-06 3 128627105 128627105 C T ACAD9 Silent p.I452I 0.29 TCGA-GN-A266-06 3 130159251 130159251 G A COL6A5 Missense_Mutation p.M2023I 0.21 tolerated(0.09) benign(0.045) TCGA-GN-A266-06 3 131274351 131274351 G A CPNE4 Missense_Mutation p.P369L 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 132319397 132319397 C T ACKR4 Silent p.F52F 0.19 TCGA-GN-A266-06 3 132409388 132409388 G A NPHP3 Nonsense_Mutation p.Q893* 0.31 TCGA-GN-A266-06 3 133475779 133475779 C T TF Missense_Mutation p.P266S 0.23 tolerated(0.08) probably_damaging(1) TCGA-GN-A266-06 3 13381426 13381426 G A NUP210 Silent p.I1133I 0.17 TCGA-GN-A266-06 3 134089733 134089733 G A AMOTL2 Silent p.S181S 0.31 TCGA-GN-A266-06 3 134089734 134089734 G A AMOTL2 Missense_Mutation p.S181F 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-GN-A266-06 3 13417834 13417834 C T NUP210 Missense_Mutation p.G417E 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 13417924 13417924 C T NUP210 Missense_Mutation p.R387Q 0.22 deleterious(0) possibly_damaging(0.709) TCGA-GN-A266-06 3 134920409 134920409 C A EPHB1 Missense_Mutation p.H742N 0.13 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 3 134920528 134920528 C T EPHB1 Silent p.S781S 0.19 TCGA-GN-A266-06 3 136574470 136574470 G A SLC35G2 Missense_Mutation p.G390S 0.27 tolerated(0.09) benign(0.363) TCGA-GN-A266-06 3 137717715 137717715 C T CLDN18 Missense_Mutation p.A2V 0.29 deleterious(0.01) benign(0.275) TCGA-GN-A266-06 3 137749972 137749972 G A CLDN18 Missense_Mutation p.D259N 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 3 138025309 138025309 C T NME9 Silent p.R97R 0.08 TCGA-GN-A266-06 3 138329733 138329733 C T FAIM 5'UTR 0.25 TCGA-GN-A266-06 3 138739116 138739116 C T PRR23B Missense_Mutation p.A130T 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A266-06 3 139257667 139257667 C T RBP1 Missense_Mutation p.E132K 0.31 deleterious(0) probably_damaging(0.954) TCGA-GN-A266-06 3 139297758 139297758 C T NMNAT3 Nonsense_Mutation p.W46* 0.40 TCGA-GN-A266-06 3 139894845 139894845 G A CLSTN2 Silent p.E54E 0.43 TCGA-GN-A266-06 3 1415662 1415662 C T CNTN6 Missense_Mutation p.P667L 0.37 deleterious(0) possibly_damaging(0.861) TCGA-GN-A266-06 3 14220167 14220167 C T LSM3 5'UTR 0.33 TCGA-GN-A266-06 3 142403152 142403152 C T PLS1 Missense_Mutation p.P268L 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 142557691 142557691 C T PCOLCE2 Missense_Mutation p.D211N 0.22 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 3 145796908 145796908 C T PLOD2 Missense_Mutation p.E499K 0.21 tolerated(0.23) benign(0.016) TCGA-GN-A266-06 3 145828077 145828077 G A PLOD2 Missense_Mutation p.S166L 0.22 deleterious(0) possibly_damaging(0.746) TCGA-GN-A266-06 3 146307599 146307599 C T PLSCR5 Silent p.V206V 0.41 TCGA-GN-A266-06 3 148459740 148459740 G A AGTR1 Silent p.G306G 0.58 TCGA-GN-A266-06 3 148460039 148460039 G A AGTR1 3'UTR 0.38 TCGA-GN-A266-06 3 148552288 148552288 G A CPB1 Missense_Mutation p.D51N 0.38 tolerated(0.08) probably_damaging(1) TCGA-GN-A266-06 3 148599312 148599312 A G CPA3 Missense_Mutation p.T194A 0.23 tolerated(0.11) benign(0.014) TCGA-GN-A266-06 3 148756981 148756981 G A HLTF Missense_Mutation p.S884F 0.40 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 3 149459388 149459388 G A COMMD2 Missense_Mutation p.H174Y 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A266-06 3 150387157 150387157 G A FAM194A Silent p.P475P 0.21 TCGA-GN-A266-06 3 150396255 150396255 G A FAM194A Nonsense_Mutation p.Q400* 0.11 TCGA-GN-A266-06 3 150876535 150876535 C T MED12L Silent p.I262I 0.21 TCGA-GN-A266-06 3 150917163 150917163 C T GPR171 Missense_Mutation p.S4N 0.30 tolerated_low_confidence(0.38) benign(0.004) TCGA-GN-A266-06 3 151056296 151056296 G A P2RY12 Missense_Mutation p.S113L 0.18 tolerated(1) benign(0.007) TCGA-GN-A266-06 3 151073805 151073805 G A MED12L Missense_Mutation p.G845E 0.28 deleterious(0) probably_damaging(0.932) TCGA-GN-A266-06 3 151127083 151127083 C T MED12L Missense_Mutation p.P1923L 0.25 deleterious_low_confidence(0.04) benign(0.082) TCGA-GN-A266-06 3 151164712 151164712 C T IGSF10 Silent p.R1019R 0.11 TCGA-GN-A266-06 3 151166168 151166168 C T IGSF10 Missense_Mutation p.G534E 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 151176435 151176435 G A IGSF10 Silent p.V21V 0.27 TCGA-GN-A266-06 3 151474789 151474789 G A AADACL2 Missense_Mutation p.D205N 0.19 tolerated(0.07) benign(0.327) TCGA-GN-A266-06 3 151475146 151475146 G A AADACL2 Missense_Mutation p.D324N 0.23 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 3 152553639 152553639 C T P2RY1 Missense_Mutation p.S23L 0.21 tolerated(0.37) benign(0) TCGA-GN-A266-06 3 154138961 154138961 C T GPR149 Missense_Mutation p.G497E 0.19 tolerated(0.57) benign(0.004) TCGA-GN-A266-06 3 154856008 154856008 G A MME Missense_Mutation p.E280K 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 155199371 155199371 A G PLCH1 Missense_Mutation p.C1490R 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 3 155200306 155200306 G A PLCH1 Missense_Mutation p.S1178F 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 3 155200514 155200514 C T PLCH1 Missense_Mutation p.E1109K 0.19 tolerated_low_confidence(0.56) benign(0.005) TCGA-GN-A266-06 3 155200581 155200581 T C PLCH1 Silent p.P1086P 0.35 TCGA-GN-A266-06 3 155282900 155282900 C T PLCH1 Silent p.T279T 0.27 TCGA-GN-A266-06 3 155838352 155838352 G A KCNAB1 5'UTR 0.37 TCGA-GN-A266-06 3 155838490 155838490 G A KCNAB1 Silent p.G30G 0.12 TCGA-GN-A266-06 3 155860951 155860951 C T KCNAB1 Intron 0.12 TCGA-GN-A266-06 3 156009848 156009848 G A KCNAB1 Intron 0.18 TCGA-GN-A266-06 3 157296096 157296096 C T C3orf55 Intron 0.40 TCGA-GN-A266-06 3 158422676 158422676 C T RARRES1 Nonsense_Mutation p.W192* 0.31 TCGA-GN-A266-06 3 159604006 159604006 G A IQCJ-SCHIP1 Missense_Mutation p.G373R 0.55 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 159604007 159604007 G A IQCJ-SCHIP1 Missense_Mutation p.G373E 0.55 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 160119868 160119868 G A SMC4 Missense_Mutation p.G102E 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 161214915 161214915 C T OTOL1 Missense_Mutation p.P107L 0.24 tolerated(0.26) unknown(0) TCGA-GN-A266-06 3 161220114 161220114 G A OTOL1 Silent p.G158G 0.23 TCGA-GN-A266-06 3 161221501 161221501 G A OTOL1 Missense_Mutation p.R402Q 0.47 deleterious(0.05) benign(0.398) TCGA-GN-A266-06 3 161221691 161221691 C T OTOL1 Silent p.F465F 0.29 TCGA-GN-A266-06 3 16216774 16216774 C T GALNT15 Missense_Mutation p.T39I 0.18 deleterious_low_confidence(0.02) benign(0.094) TCGA-GN-A266-06 3 16254142 16254142 C T GALNT15 Nonsense_Mutation p.Q422* 0.31 TCGA-GN-A266-06 3 16419226 16419226 C T RFTN1 Silent p.G275G 0.20 TCGA-GN-A266-06 3 164712147 164712147 C T SI Missense_Mutation p.R1580K 0.32 tolerated(0.31) benign(0.018) TCGA-GN-A266-06 3 164716441 164716441 C T SI Missense_Mutation p.G1476E 0.17 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 3 164739156 164739156 T C SI Missense_Mutation p.K1039E 0.35 tolerated(0.08) benign(0.005) TCGA-GN-A266-06 3 164907932 164907932 C T SLITRK3 Silent p.L229L 0.42 TCGA-GN-A266-06 3 165547537 165547537 G A BCHE Missense_Mutation p.P429S 0.39 deleterious(0.04) probably_damaging(0.915) TCGA-GN-A266-06 3 167033541 167033541 C T ZBBX Missense_Mutation p.R424Q 0.25 tolerated(1) benign(0) TCGA-GN-A266-06 3 167159894 167159894 C T SERPINI2 3'UTR 0.19 TCGA-GN-A266-06 3 167159914 167159914 C T SERPINI2 Missense_Mutation p.D401N 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 167183119 167183119 G A SERPINI2 Silent p.S247S 0.30 TCGA-GN-A266-06 3 167240194 167240194 C T WDR49 Missense_Mutation p.E543K 0.31 tolerated(0.12) benign(0.014) TCGA-GN-A266-06 3 167277998 167277998 C T WDR49 Missense_Mutation p.G169R 0.46 deleterious(0) possibly_damaging(0.903) TCGA-GN-A266-06 3 168802643 168802643 G A MECOM 3'UTR 0.37 TCGA-GN-A266-06 3 168833916 168833916 G T MECOM Missense_Mutation p.L459I 0.11 tolerated(0.05) possibly_damaging(0.721) TCGA-GN-A266-06 3 169557796 169557796 G A LRRC31 Missense_Mutation p.H545Y 0.29 tolerated(0.14) possibly_damaging(0.642) TCGA-GN-A266-06 3 169644770 169644770 G A SAMD7 Silent p.T240T 0.17 TCGA-GN-A266-06 3 169700524 169700524 C T SEC62 Missense_Mutation p.A94V 0.10 deleterious(0.02) possibly_damaging(0.726) TCGA-GN-A266-06 3 169896716 169896716 G A PHC3 Missense_Mutation p.H9Y 0.23 tolerated_low_confidence(0.07) benign(0.094) TCGA-GN-A266-06 3 169985707 169985707 C T PRKCI Silent p.S123S 0.43 TCGA-GN-A266-06 3 169999030 169999030 C T PRKCI Missense_Mutation p.S320F 0.16 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 3 170108192 170108192 T C SKIL Silent p.T537T 0.53 TCGA-GN-A266-06 3 170140970 170140970 C T CLDN11 Silent p.R82R 0.21 TCGA-GN-A266-06 3 17052024 17052024 G A PLCL2 Missense_Mutation p.E270K 0.24 tolerated(0.59) benign(0.06) TCGA-GN-A266-06 3 170715855 170715855 C T SLC2A2 Missense_Mutation p.G471E 0.16 tolerated(0.19) possibly_damaging(0.906) TCGA-GN-A266-06 3 170716153 170716153 C T SLC2A2 Missense_Mutation p.M401I 0.14 tolerated(1) possibly_damaging(0.877) TCGA-GN-A266-06 3 170906620 170906620 C T TNIK Silent p.V170V 0.34 TCGA-GN-A266-06 3 171965461 171965461 C T FNDC3B Missense_Mutation p.H135Y 0.21 tolerated(0.53) benign(0.089) TCGA-GN-A266-06 3 17202633 17202633 G A TBC1D5 Missense_Mutation p.P759L 0.35 tolerated_low_confidence(0.15) benign(0.001) TCGA-GN-A266-06 3 172166133 172166133 G A GHSR Missense_Mutation p.S24F 0.21 tolerated(0.05) benign(0.001) TCGA-GN-A266-06 3 172351691 172351691 G A NCEH1 Silent p.I307I 0.22 TCGA-GN-A266-06 3 172631501 172631501 G A SPATA16 Missense_Mutation p.L513F 0.19 deleterious(0) possibly_damaging(0.765) TCGA-GN-A266-06 3 175165038 175165038 G A NAALADL2 Missense_Mutation p.R371Q 0.38 tolerated(0.43) benign(0.003) TCGA-GN-A266-06 3 179597774 179597774 C T PEX5L Missense_Mutation p.D150N 0.44 deleterious_low_confidence(0) benign(0.083) TCGA-GN-A266-06 3 180377491 180377491 C T CCDC39 Missense_Mutation p.E195K 0.27 deleterious(0.02) benign(0.345) TCGA-GN-A266-06 3 182858380 182858380 C T LAMP3 Missense_Mutation p.E298K 0.49 deleterious(0.05) possibly_damaging(0.53) TCGA-GN-A266-06 3 183469889 183469889 C T YEATS2 Missense_Mutation p.S333F 0.34 deleterious(0.04) benign(0.011) TCGA-GN-A266-06 3 18391025 18391025 C T SATB1 Silent p.Q675Q 0.23 TCGA-GN-A266-06 3 18393507 18393507 G A SATB1 Missense_Mutation p.H586Y 0.30 deleterious(0) possibly_damaging(0.889) TCGA-GN-A266-06 3 18393508 18393508 G A SATB1 Silent p.I585I 0.30 TCGA-GN-A266-06 3 184019347 184019347 C T PSMD2 Missense_Mutation p.S127F 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 184019348 184019348 C T PSMD2 Silent p.S127S 0.34 TCGA-GN-A266-06 3 184043640 184043640 C T EIF4G1 Silent p.S1048S 0.21 TCGA-GN-A266-06 3 184075213 184075213 A G CLCN2 Missense_Mutation p.F279L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 3 184090693 184090693 C T THPO Missense_Mutation p.G224R 0.16 deleterious_low_confidence(0.04) benign(0.142) TCGA-GN-A266-06 3 184106376 184106376 G A CHRD Silent p.V852V 0.27 TCGA-GN-A266-06 3 184289160 184289160 C T EPHB3 Missense_Mutation p.P58L 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A266-06 3 186358202 186358202 C T FETUB 5'UTR 0.23 TCGA-GN-A266-06 3 186394836 186394836 G A HRG Missense_Mutation p.E248K 0.28 tolerated(0.14) benign(0.292) TCGA-GN-A266-06 3 186395181 186395181 G A HRG Missense_Mutation p.G363R 0.43 tolerated(0.11) benign(0.026) TCGA-GN-A266-06 3 187416406 187416406 C T RTP2 Silent p.P186P 0.19 TCGA-GN-A266-06 3 187449586 187449586 C T BCL6 Silent p.R98R 0.15 TCGA-GN-A266-06 3 189349302 189349302 G A TP63 5'UTR 0.16 TCGA-GN-A266-06 3 189586378 189586378 C T TP63 Silent p.V334V 0.10 TCGA-GN-A266-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.17 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 3 189597954 189597954 C T TP63 Intron 0.27 TCGA-GN-A266-06 3 189691731 189691731 C T LEPREL1 Silent p.K505K 0.34 TCGA-GN-A266-06 3 189700921 189700921 G A LEPREL1 Missense_Mutation p.S413L 0.27 tolerated(0.09) benign(0.005) TCGA-GN-A266-06 3 189711983 189711983 G A LEPREL1 Silent p.F241F 0.15 TCGA-GN-A266-06 3 190366453 190366453 G A IL1RAP Intron 0.11 TCGA-GN-A266-06 3 190967849 190967849 G A OSTN Missense_Mutation p.R114K 0.20 tolerated(0.24) benign(0.009) TCGA-GN-A266-06 3 191179243 191179243 T A PYDC2 Nonstop_Mutation p.*98Kext*? 0.34 TCGA-GN-A266-06 3 191861731 191861731 G A FGF12 3'UTR 0.25 TCGA-GN-A266-06 3 192517368 192517368 C T MB21D2 Missense_Mutation p.E95K 0.42 deleterious(0.01) possibly_damaging(0.604) TCGA-GN-A266-06 3 192994600 192994600 G A ATP13A5 Missense_Mutation p.S1112L 0.39 tolerated(0.6) benign(0.006) TCGA-GN-A266-06 3 193002816 193002816 G A ATP13A5 Missense_Mutation p.S1038L 0.24 tolerated(0.06) benign(0.133) TCGA-GN-A266-06 3 193025133 193025133 C T ATP13A5 Missense_Mutation p.G851R 0.51 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 193036815 193036815 C T ATP13A5 Silent p.K666K 0.25 TCGA-GN-A266-06 3 193132532 193132532 C T ATP13A4 Silent p.L950L 0.20 TCGA-GN-A266-06 3 193201734 193201734 C T ATP13A4 Missense_Mutation p.G267R 0.30 tolerated(1) benign(0.009) TCGA-GN-A266-06 3 195053810 195053810 C T ACAP2 Missense_Mutation p.G206R 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A266-06 3 195053811 195053811 T A ACAP2 Missense_Mutation p.Q205H 0.17 deleterious(0.01) possibly_damaging(0.741) TCGA-GN-A266-06 3 195505259 195505259 G A MUC4 Silent p.T4286T 0.32 TCGA-GN-A266-06 3 195517235 195517235 T G MUC4 Missense_Mutation p.N406H 0.40 unknown(0) TCGA-GN-A266-06 3 195517442 195517442 G A MUC4 Nonsense_Mutation p.Q337* 0.35 TCGA-GN-A266-06 3 195518055 195518055 C T MUC4 Missense_Mutation p.M132I 0.13 unknown(0) TCGA-GN-A266-06 3 19575008 19575008 C T KCNH8 Missense_Mutation p.S914F 0.30 tolerated_low_confidence(0.11) benign(0.161) TCGA-GN-A266-06 3 196054333 196054333 G A TM4SF19 Silent p.V43V 0.20 TCGA-GN-A266-06 3 196744020 196744020 G A MFI2 Missense_Mutation p.A285V 0.28 tolerated(0.27) benign(0.219) TCGA-GN-A266-06 3 197238844 197238844 C T BDH1 Missense_Mutation p.M318I 0.11 tolerated(0.06) possibly_damaging(0.659) TCGA-GN-A266-06 3 24169111 24169111 C T THRB Silent p.L341L 0.19 TCGA-GN-A266-06 3 24231761 24231761 T G THRB Silent p.L29L 0.27 TCGA-GN-A266-06 3 25775392 25775392 G A NGLY1 Nonsense_Mutation p.R411* 0.30 TCGA-GN-A266-06 3 26751278 26751278 C T LRRC3B Missense_Mutation p.L39F 0.19 tolerated(0.64) benign(0.002) TCGA-GN-A266-06 3 27216271 27216271 C A NEK10 Silent p.L853L 0.29 TCGA-GN-A266-06 3 29323149 29323149 C T RBMS3 5'UTR 0.32 TCGA-GN-A266-06 3 30032613 30032613 C T RBMS3 Missense_Mutation p.S407L 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.517) TCGA-GN-A266-06 3 3081678 3081678 G A CNTN4 Intron 0.35 TCGA-GN-A266-06 3 30842408 30842408 C T GADL1 Missense_Mutation p.R408K 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-GN-A266-06 3 3146588 3146588 C T IL5RA Silent p.K27K 0.16 TCGA-GN-A266-06 3 32409428 32409428 C T CMTM8 Missense_Mutation p.S129F 0.28 deleterious(0) possibly_damaging(0.685) TCGA-GN-A266-06 3 32409429 32409429 C T CMTM8 Silent p.S129S 0.28 TCGA-GN-A266-06 3 32483433 32483433 G A CMTM7 Missense_Mutation p.M87I 0.33 deleterious(0.02) possibly_damaging(0.673) TCGA-GN-A266-06 3 32769172 32769172 C T CNOT10 Missense_Mutation p.S402L 0.25 tolerated(0.11) possibly_damaging(0.804) TCGA-GN-A266-06 3 32927435 32927435 G A TRIM71 Missense_Mutation p.E344K 0.46 tolerated(0.17) benign(0.125) TCGA-GN-A266-06 3 33135527 33135527 G A TMPPE Missense_Mutation p.S54L 0.27 tolerated(0.32) benign(0.048) TCGA-GN-A266-06 3 35750488 35750488 G A ARPP21 Intron 0.21 TCGA-GN-A266-06 3 35770852 35770852 C T ARPP21 Missense_Mutation p.P394L 0.35 deleterious(0.04) possibly_damaging(0.771) TCGA-GN-A266-06 3 35833970 35833970 G A ARPP21 Missense_Mutation p.G711E 0.29 deleterious(0) probably_damaging(0.982) TCGA-GN-A266-06 3 36545914 36545914 G A STAC Missense_Mutation p.D266N 0.43 tolerated(0.25) benign(0.006) TCGA-GN-A266-06 3 36759619 36759619 G A DCLK3 Silent p.I545I 0.33 TCGA-GN-A266-06 3 36779376 36779376 C T DCLK3 Missense_Mutation p.E259K 0.31 deleterious(0.03) benign(0.1) TCGA-GN-A266-06 3 36873841 36873841 C T TRANK1 Silent p.E2367E 0.35 TCGA-GN-A266-06 3 36874009 36874009 C T TRANK1 Silent p.E2311E 0.32 TCGA-GN-A266-06 3 36874402 36874402 C T TRANK1 Silent p.S2180S 0.25 TCGA-GN-A266-06 3 36874636 36874636 C T TRANK1 Silent p.L2102L 0.41 TCGA-GN-A266-06 3 36880169 36880169 C T TRANK1 Silent p.E1729E 0.26 TCGA-GN-A266-06 3 36893771 36893771 G A TRANK1 Missense_Mutation p.R1495C 0.35 deleterious(0) possibly_damaging(0.587) TCGA-GN-A266-06 3 36898104 36898104 C A TRANK1 Missense_Mutation p.A993S 0.28 deleterious(0.01) probably_damaging(0.911) TCGA-GN-A266-06 3 36898105 36898105 C T TRANK1 Missense_Mutation p.M992I 0.29 deleterious(0.01) benign(0.265) TCGA-GN-A266-06 3 38134316 38134316 G A DLEC1 Silent p.E567E 0.29 TCGA-GN-A266-06 3 38348031 38348031 G A SLC22A14 Missense_Mutation p.E172K 0.35 deleterious(0.05) probably_damaging(0.989) TCGA-GN-A266-06 3 38355398 38355398 C T SLC22A14 Silent p.I448I 0.26 TCGA-GN-A266-06 3 38640490 38640490 G A SCN5A Missense_Mutation p.P648S 0.33 tolerated(0.79) benign(0.098) TCGA-GN-A266-06 3 38646304 38646304 C T SCN5A Silent p.R478R 0.25 TCGA-GN-A266-06 3 38647622 38647622 C T SCN5A Silent p.G386G 0.37 TCGA-GN-A266-06 3 38663953 38663953 G A SCN5A Silent p.T140T 0.33 TCGA-GN-A266-06 3 38739252 38739252 G A SCN10A Missense_Mutation p.S1820F 0.48 deleterious(0) possibly_damaging(0.62) TCGA-GN-A266-06 3 38760147 38760147 C T SCN10A Silent p.V1226V 0.32 TCGA-GN-A266-06 3 38889091 38889091 C T SCN11A Silent p.L1490L 0.33 TCGA-GN-A266-06 3 38961472 38961472 C T SCN11A Missense_Mutation p.E305K 0.30 tolerated(0.37) benign(0.007) TCGA-GN-A266-06 3 38961481 38961481 C T SCN11A Missense_Mutation p.E302K 0.28 tolerated(0.46) benign(0.026) TCGA-GN-A266-06 3 38991643 38991643 G A SCN11A Missense_Mutation p.R71C 0.19 tolerated(0.08) benign(0.002) TCGA-GN-A266-06 3 38991865 38991865 G A SCN11A 5'UTR 0.34 TCGA-GN-A266-06 3 40433371 40433371 C T ENTPD3 Intron 0.50 TCGA-GN-A266-06 3 42906396 42906396 C T ACKR2 Silent p.F134F 0.22 TCGA-GN-A266-06 3 42916031 42916031 G A CYP8B1 Silent p.I426I 0.19 TCGA-GN-A266-06 3 42916478 42916478 G A CYP8B1 Silent p.F277F 0.59 TCGA-GN-A266-06 3 42949559 42949559 G A ZNF662 Missense_Mutation p.E46K 0.12 deleterious(0) possibly_damaging(0.553) TCGA-GN-A266-06 3 43388867 43388867 C T SNRK Silent p.D372D 0.18 TCGA-GN-A266-06 3 43388868 43388868 C T SNRK Missense_Mutation p.L373F 0.18 deleterious(0.02) benign(0.157) TCGA-GN-A266-06 3 43389194 43389194 G A SNRK Silent p.K481K 0.30 TCGA-GN-A266-06 3 44488121 44488121 G A ZNF445 Silent p.T1014T 0.29 TCGA-GN-A266-06 3 44541329 44541329 G A ZNF852 Missense_Mutation p.L314F 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-GN-A266-06 3 44612818 44612818 G A ZKSCAN7 Missense_Mutation p.R739Q 0.30 deleterious(0.02) possibly_damaging(0.879) TCGA-GN-A266-06 3 44776090 44776090 C T ZNF501 Silent p.F59F 0.12 TCGA-GN-A266-06 3 44852408 44852408 G A KIF15 Missense_Mutation p.G681E 0.41 tolerated(1) benign(0.009) TCGA-GN-A266-06 3 44943362 44943362 G A TGM4 Missense_Mutation p.V304M 0.21 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 3 44945376 44945376 G A TGM4 Nonsense_Mutation p.W324* 0.35 TCGA-GN-A266-06 3 45127460 45127460 C T CDCP1 Silent p.K727K 0.14 TCGA-GN-A266-06 3 45151935 45151935 G A CDCP1 Intron 0.30 TCGA-GN-A266-06 3 46063217 46063217 G A XCR1 Missense_Mutation p.L75F 0.42 deleterious(0.02) benign(0.144) TCGA-GN-A266-06 3 46399939 46399939 C T CCR2 Silent p.F307F 0.36 TCGA-GN-A266-06 3 46414700 46414700 C T CCR5 Missense_Mutation p.L103F 0.26 tolerated(0.32) benign(0.028) TCGA-GN-A266-06 3 46785598 46785598 G A PRSS45 Missense_Mutation p.S49F 0.50 tolerated(0.42) benign(0.077) TCGA-GN-A266-06 3 47286411 47286411 C T KIF9 Missense_Mutation p.G462R 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-GN-A266-06 3 47887831 47887831 G C DHX30 Silent p.R423R 0.42 TCGA-GN-A266-06 3 47950923 47950923 G A MAP4 Intron 0.18 TCGA-GN-A266-06 3 48207191 48207191 G A CDC25A Missense_Mutation p.L376F 0.30 tolerated(0.36) benign(0.017) TCGA-GN-A266-06 3 48619179 48619179 G A COL7A1 Missense_Mutation p.P1561L 0.12 unknown(0) TCGA-GN-A266-06 3 48619180 48619180 G A COL7A1 Missense_Mutation p.P1561S 0.13 unknown(0) TCGA-GN-A266-06 3 48621767 48621767 G A COL7A1 Silent p.P1387P 0.35 TCGA-GN-A266-06 3 48623516 48623516 G A COL7A1 Silent p.F1238F 0.40 TCGA-GN-A266-06 3 48625814 48625814 C T COL7A1 Missense_Mutation p.G871R 0.35 unknown(0) TCGA-GN-A266-06 3 48629172 48629172 G A COL7A1 Missense_Mutation p.R481C 0.36 unknown(0) TCGA-GN-A266-06 3 48629344 48629344 C T COL7A1 Nonsense_Mutation p.W448* 0.28 TCGA-GN-A266-06 3 48677424 48677424 C T CELSR3 Silent p.S3198S 0.28 TCGA-GN-A266-06 3 48685752 48685752 C T CELSR3 Missense_Mutation p.R2307K 0.21 tolerated(0.18) benign(0.003) TCGA-GN-A266-06 3 48699813 48699813 G A CELSR3 Silent p.F85F 0.20 TCGA-GN-A266-06 3 49011154 49011154 C T ARIH2 Missense_Mutation p.H265Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 3 49065936 49065936 G A IMPDH2 Silent p.I59I 0.11 TCGA-GN-A266-06 3 49735880 49735880 T C RNF123 Missense_Mutation p.V164A 0.27 deleterious(0.03) possibly_damaging(0.785) TCGA-GN-A266-06 3 49743429 49743429 C T RNF123 Silent p.S773S 0.37 TCGA-GN-A266-06 3 49836294 49836294 G A CDHR4 Silent p.L154L 0.26 TCGA-GN-A266-06 3 50155853 50155853 G A RBM5 Silent p.R804R 0.43 TCGA-GN-A266-06 3 50253047 50253047 A C SLC38A3 RNA 0.23 TCGA-GN-A266-06 3 50293694 50293694 C T GNAI2 Missense_Mutation p.R179C 0.34 deleterious(0.02) benign(0.041) TCGA-GN-A266-06 3 50329948 50329948 G A IFRD2 5'Flank 0.31 TCGA-GN-A266-06 3 50513589 50513589 C T CACNA2D2 Missense_Mutation p.G83D 0.31 tolerated(0.67) possibly_damaging(0.544) TCGA-GN-A266-06 3 51198003 51198003 G A DOCK3 Missense_Mutation p.D303N 0.26 deleterious(0.01) possibly_damaging(0.756) TCGA-GN-A266-06 3 51251631 51251631 G A DOCK3 Missense_Mutation p.G402E 0.30 deleterious(0) possibly_damaging(0.776) TCGA-GN-A266-06 3 51263190 51263190 G A DOCK3 Missense_Mutation p.G455R 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 51929158 51929158 G A IQCF1 Silent p.S122S 0.11 TCGA-GN-A266-06 3 52088020 52088020 G A DUSP7 Silent p.I296I 0.30 TCGA-GN-A266-06 3 52383297 52383297 C T DNAH1 Missense_Mutation p.S796L 0.36 benign(0.001) TCGA-GN-A266-06 3 52398945 52398945 C T DNAH1 Missense_Mutation p.P1810S 0.45 probably_damaging(0.998) TCGA-GN-A266-06 3 52429461 52429461 C T DNAH1 Silent p.A3702A 0.30 TCGA-GN-A266-06 3 52553332 52553332 C T STAB1 Missense_Mutation p.A1696V 0.32 tolerated(0.08) benign(0.073) TCGA-GN-A266-06 3 52554946 52554946 G A STAB1 Missense_Mutation p.G1945S 0.40 deleterious(0.02) possibly_damaging(0.904) TCGA-GN-A266-06 3 52562323 52562323 G A NT5DC2 Missense_Mutation p.P216L 0.14 deleterious(0.03) benign(0.437) TCGA-GN-A266-06 3 52836469 52836469 C T ITIH3 Silent p.I501I 0.27 TCGA-GN-A266-06 3 53851977 53851977 C T CHDH Missense_Mutation p.E538K 0.31 tolerated(0.07) possibly_damaging(0.794) TCGA-GN-A266-06 3 53883697 53883697 G A IL17RB Nonsense_Mutation p.W34* 0.19 TCGA-GN-A266-06 3 54952447 54952447 C T LRTM1 3'UTR 0.13 TCGA-GN-A266-06 3 54959240 54959240 C T LRTM1 Missense_Mutation p.E4K 0.29 tolerated(0.73) benign(0.026) TCGA-GN-A266-06 3 55108198 55108198 C T CACNA2D3 Silent p.L1081L 0.29 TCGA-GN-A266-06 3 56044597 56044597 C T ERC2 Silent p.L600L 0.28 TCGA-GN-A266-06 3 56330247 56330247 C T ERC2 Missense_Mutation p.E292K 0.12 deleterious(0) probably_damaging(0.947) TCGA-GN-A266-06 3 56330340 56330340 C T ERC2 Missense_Mutation p.E261K 0.30 deleterious(0.01) possibly_damaging(0.672) TCGA-GN-A266-06 3 56807801 56807801 G A ARHGEF3 Missense_Mutation p.S79L 0.33 deleterious(0) probably_damaging(0.946) TCGA-GN-A266-06 3 58112447 58112447 G A FLNB Missense_Mutation p.D1394N 0.38 tolerated(0.11) benign(0.007) TCGA-GN-A266-06 3 58635049 58635049 C T FAM3D Silent p.K46K 0.35 TCGA-GN-A266-06 3 61989031 61989031 C T PTPRG Missense_Mutation p.L127F 0.24 tolerated(0.7) benign(0.035) TCGA-GN-A266-06 3 62451123 62451123 G A CADPS Silent p.F1185F 0.31 TCGA-GN-A266-06 3 62464011 62464011 T C CADPS Missense_Mutation p.E1085G 0.12 deleterious(0) benign(0.403) TCGA-GN-A266-06 3 62631473 62631473 G A CADPS Missense_Mutation p.R417C 0.28 deleterious(0) possibly_damaging(0.689) TCGA-GN-A266-06 3 63638413 63638413 G A SNTN Missense_Mutation p.G17E 0.37 tolerated(0.1) benign(0.178) TCGA-GN-A266-06 3 65369279 65369279 C T MAGI1 Silent p.Q812Q 0.18 TCGA-GN-A266-06 3 65464362 65464362 C T MAGI1 Missense_Mutation p.R221Q 0.32 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 3 68466508 68466508 A T FAM19A1 Missense_Mutation p.K66M 0.28 deleterious(0) probably_damaging(0.983) TCGA-GN-A266-06 3 70014315 70014315 C T MITF Silent p.L493L 0.35 TCGA-GN-A266-06 3 74350893 74350893 G T CNTN3 Missense_Mutation p.S617Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 74383952 74383952 G A CNTN3 Silent p.T534T 0.40 TCGA-GN-A266-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.12 deleterious(0) possibly_damaging(0.85) TCGA-GN-A266-06 3 77571981 77571981 G A ROBO2 Missense_Mutation p.E304K 0.31 deleterious(0.04) possibly_damaging(0.621) TCGA-GN-A266-06 3 77612365 77612365 G A ROBO2 Missense_Mutation p.G539R 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A266-06 3 77612366 77612366 G A ROBO2 Missense_Mutation p.G539E 0.21 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 3 77638049 77638049 G A ROBO2 Missense_Mutation p.R899Q 0.33 deleterious(0.01) benign(0.238) TCGA-GN-A266-06 3 77644301 77644301 C T ROBO2 Nonsense_Mutation p.Q914* 0.18 TCGA-GN-A266-06 3 77666843 77666843 G T ROBO2 Missense_Mutation p.R1174L 0.24 deleterious(0) benign(0.25) TCGA-GN-A266-06 3 86115950 86115950 C T CADM2 3'Flank 0.31 TCGA-GN-A266-06 3 86996121 86996121 C T VGLL3 3'UTR 0.32 TCGA-GN-A266-06 3 87018049 87018049 G A VGLL3 Missense_Mutation p.P210S 0.29 tolerated(0.78) benign(0.03) TCGA-GN-A266-06 3 87313522 87313522 C - POU1F1 Frame_Shift_Del p.E145Kfs*4 0.21 TCGA-GN-A266-06 3 88199122 88199122 C T C3orf38 5'UTR 0.42 TCGA-GN-A266-06 3 89259197 89259197 G A EPHA3 Missense_Mutation p.G114E 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 89456471 89456471 G A EPHA3 Silent p.A549A 0.50 TCGA-GN-A266-06 3 9034636 9034636 G A SRGAP3 Missense_Mutation p.P838S 0.30 tolerated(0.05) probably_damaging(0.996) TCGA-GN-A266-06 3 9034637 9034637 G A SRGAP3 Silent p.S837S 0.32 TCGA-GN-A266-06 3 9036102 9036102 G A SRGAP3 Missense_Mutation p.S778L 0.42 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 3 9055023 9055023 C T SRGAP3 Missense_Mutation p.E706K 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-GN-A266-06 3 9089102 9089102 C T SRGAP3 Missense_Mutation p.D461N 0.09 deleterious(0) possibly_damaging(0.719) TCGA-GN-A266-06 3 9543896 9543896 C T LHFPL4 Silent p.%3D 0.21 TCGA-GN-A266-06 3 9547816 9547816 C T LHFPL4 Missense_Mutation p.G160R 0.33 deleterious(0) probably_damaging(0.918) TCGA-GN-A266-06 3 96706372 96706372 G A EPHA6 Missense_Mutation p.E217K 0.22 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 3 96706415 96706415 G A EPHA6 Missense_Mutation p.G231E 0.19 tolerated(0.16) possibly_damaging(0.795) TCGA-GN-A266-06 3 96706498 96706498 C T EPHA6 Missense_Mutation p.R259C 0.34 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 3 97596413 97596413 C T CRYBG3 Silent p.S177S 0.28 TCGA-GN-A266-06 3 97596414 97596414 C A CRYBG3 Missense_Mutation p.L178I 0.30 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 3 97726707 97726707 C T GABRR3 Intron 0.36 TCGA-GN-A266-06 3 97806870 97806870 C T OR5AC2 Missense_Mutation p.P285L 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 3 97851841 97851841 G A OR5H1 Silent p.Q100Q 0.25 TCGA-GN-A266-06 3 97851849 97851849 C T OR5H1 Missense_Mutation p.S103L 0.31 tolerated(0.13) benign(0.03) TCGA-GN-A266-06 3 97868678 97868678 T C OR5H14 Missense_Mutation p.V150A 0.16 tolerated(0.14) benign(0.018) TCGA-GN-A266-06 3 97983425 97983425 C T OR5H6 Silent p.I99I 0.30 TCGA-GN-A266-06 3 98001750 98001750 G A OR5H2 Missense_Mutation p.E7K 0.26 tolerated(0.46) benign(0.006) TCGA-GN-A266-06 3 98217208 98217208 G A OR5K2 Missense_Mutation p.M228I 0.35 tolerated(0.13) benign(0.1) TCGA-GN-A266-06 3 98251319 98251319 G A GPR15 Missense_Mutation p.D148N 0.32 tolerated(0.54) benign(0.015) TCGA-GN-A266-06 4 100239334 100239334 G A ADH1B Missense_Mutation p.A43V 0.44 deleterious(0.01) benign(0.021) TCGA-GN-A266-06 4 100261858 100261858 G T ADH1C Missense_Mutation p.L280M 0.51 probably_damaging(0.954) TCGA-GN-A266-06 4 103610769 103610769 C T MANBA Missense_Mutation p.E308K 0.53 tolerated(0.97) benign(0.001) TCGA-GN-A266-06 4 103912820 103912820 G A SLC9B1 Nonsense_Mutation p.Q17* 0.50 TCGA-GN-A266-06 4 104510993 104510993 G A TACR3 Missense_Mutation p.P415L 0.18 tolerated(0.06) benign(0.046) TCGA-GN-A266-06 4 104510994 104510994 G A TACR3 Missense_Mutation p.P415S 0.18 tolerated(0.27) benign(0.002) TCGA-GN-A266-06 4 107092295 107092295 G A TBCK Missense_Mutation p.P731L 0.47 deleterious(0.03) benign(0.004) TCGA-GN-A266-06 4 110617579 110617579 G C CASP6 Silent p.L98L 0.52 TCGA-GN-A266-06 4 110667403 110667403 G A CFI Silent p.I468I 0.19 TCGA-GN-A266-06 4 110791074 110791074 C T LRIT3 Missense_Mutation p.S390F 0.24 tolerated(0.44) benign(0.015) TCGA-GN-A266-06 4 111539257 111539257 G T PITX2 3'UTR 0.60 TCGA-GN-A266-06 4 113540840 113540840 G A C4orf21 Nonsense_Mutation p.Q120* 0.51 TCGA-GN-A266-06 4 114278605 114278605 C T ANK2 Missense_Mutation p.T2944I 0.59 benign(0.007) TCGA-GN-A266-06 4 114286205 114286205 C T ANK2 Silent p.L3633L 0.52 TCGA-GN-A266-06 4 114378625 114378625 C T CAMK2D Silent p.R433R 0.44 TCGA-GN-A266-06 4 119256771 119256771 C T PRSS12 Missense_Mutation p.G226E 0.52 tolerated(0.06) benign(0.169) TCGA-GN-A266-06 4 119666174 119666174 G A SEC24D Silent p.S583S 0.56 TCGA-GN-A266-06 4 121720822 121720822 G A PRDM5 Missense_Mutation p.H342Y 0.40 deleterious(0) probably_damaging(0.984) TCGA-GN-A266-06 4 121957507 121957507 G A NDNF Missense_Mutation p.S540F 0.53 tolerated(0.07) possibly_damaging(0.571) TCGA-GN-A266-06 4 122854062 122854062 G A TRPC3 Silent p.L117L 0.39 TCGA-GN-A266-06 4 126241317 126241317 A G FAT4 Missense_Mutation p.K1251E 0.52 benign(0.013) TCGA-GN-A266-06 4 126329794 126329794 G A FAT4 Missense_Mutation p.G1922E 0.49 probably_damaging(1) TCGA-GN-A266-06 4 126411609 126411609 G A FAT4 Silent p.K4544K 0.41 TCGA-GN-A266-06 4 126412421 126412421 C T FAT4 Missense_Mutation p.S4815L 0.51 probably_damaging(0.985) TCGA-GN-A266-06 4 126412820 126412820 A G FAT4 Missense_Mutation p.K4948R 0.72 probably_damaging(0.913) TCGA-GN-A266-06 4 128811023 128811023 C T PLK4 Missense_Mutation p.H488Y 0.31 tolerated(0.06) benign(0.303) TCGA-GN-A266-06 4 138451759 138451759 C T PCDH18 Missense_Mutation p.G495E 0.22 tolerated(0.06) benign(0.019) TCGA-GN-A266-06 4 138452467 138452467 G A PCDH18 Missense_Mutation p.S259F 0.41 deleterious(0) probably_damaging(0.926) TCGA-GN-A266-06 4 138452772 138452772 G A PCDH18 Silent p.P157P 0.50 TCGA-GN-A266-06 4 139163186 139163186 C T SLC7A11 Missense_Mutation p.G13E 0.44 tolerated(0.11) benign(0.415) TCGA-GN-A266-06 4 144106564 144106564 G T USP38 5'UTR 0.19 TCGA-GN-A266-06 4 148463676 148463676 C T EDNRA Missense_Mutation p.S397L 0.40 tolerated(0.56) benign(0.001) TCGA-GN-A266-06 4 151203676 151203676 C T LRBA Missense_Mutation p.E2759K 0.18 tolerated(0.14) benign(0.248) TCGA-GN-A266-06 4 151504073 151504073 G A MAB21L2 5'UTR 0.29 TCGA-GN-A266-06 4 153245389 153245389 G A FBXW7 Missense_Mutation p.S601F 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-GN-A266-06 4 15444102 15444102 G A C1QTNF7 Silent p.G190G 0.62 TCGA-GN-A266-06 4 155256162 155256162 G A DCHS2 Silent p.V358V 0.60 TCGA-GN-A266-06 4 155719258 155719258 C T RBM46 Silent p.P149P 0.51 TCGA-GN-A266-06 4 15717380 15717380 G A BST1 Missense_Mutation p.R221Q 0.37 tolerated(0.36) benign(0.211) TCGA-GN-A266-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.63 TCGA-GN-A266-06 4 164534625 164534625 A G MARCH1 Intron 0.12 TCGA-GN-A266-06 4 166935613 166935613 C T TLL1 Missense_Mutation p.P315S 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 4 166946575 166946575 G A TLL1 Missense_Mutation p.G384R 0.57 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 4 169086397 169086397 G A ANXA10 Splice_Site p.X134_splice 0.62 TCGA-GN-A266-06 4 169138161 169138161 C T DDX60 Missense_Mutation p.E1688K 0.44 tolerated(0.06) benign(0.072) TCGA-GN-A266-06 4 169158547 169158547 C T DDX60 Missense_Mutation p.G1434E 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-GN-A266-06 4 169158553 169158553 G A DDX60 Missense_Mutation p.P1432L 0.27 deleterious(0.01) benign(0.157) TCGA-GN-A266-06 4 169167643 169167643 G A DDX60 Missense_Mutation p.L1364F 0.60 tolerated(0.06) benign(0.157) TCGA-GN-A266-06 4 174450173 174450173 G A HAND2 Missense_Mutation p.P90S 0.60 tolerated(0.4) benign(0.005) TCGA-GN-A266-06 4 175598361 175598361 G A GLRA3 Silent p.L265L 0.38 TCGA-GN-A266-06 4 175649825 175649825 G A GLRA3 Missense_Mutation p.R98C 0.43 deleterious(0) probably_damaging(0.954) TCGA-GN-A266-06 4 183650163 183650163 C T TENM3 Missense_Mutation p.S805F 0.48 tolerated(0.61) possibly_damaging(0.831) TCGA-GN-A266-06 4 183664443 183664443 C T TENM3 Missense_Mutation p.A1167V 0.42 deleterious(0) benign(0.021) TCGA-GN-A266-06 4 186295301 186295301 C T LRP2BP Silent p.K189K 0.46 TCGA-GN-A266-06 4 186583354 186583354 G A SORBS2 Missense_Mutation p.P100S 0.62 tolerated(0.14) probably_damaging(0.999) TCGA-GN-A266-06 4 20598263 20598263 G A SLIT2 Silent p.T1182T 0.48 TCGA-GN-A266-06 4 22737782 22737782 C T GBA3 Silent p.S79S 0.52 TCGA-GN-A266-06 4 2306175 2306175 G A ZFYVE28 Missense_Mutation p.S631F 0.47 deleterious_low_confidence(0) possibly_damaging(0.463) TCGA-GN-A266-06 4 25030152 25030152 G A LGI2 Silent p.S82S 0.42 TCGA-GN-A266-06 4 3214418 3214418 C T HTT Silent p.F2252F 0.49 TCGA-GN-A266-06 4 36126563 36126563 T C ARAP2 Missense_Mutation p.K1223E 0.55 tolerated(0.86) benign(0.013) TCGA-GN-A266-06 4 38051315 38051315 T G TBC1D1 Missense_Mutation p.L569R 0.39 deleterious(0.02) possibly_damaging(0.794) TCGA-GN-A266-06 4 38138951 38138951 G A TBC1D1 Missense_Mutation p.D1168N 0.54 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GN-A266-06 4 40440173 40440173 C T RBM47 Silent p.K246K 0.51 TCGA-GN-A266-06 4 41648653 41648653 C T LIMCH1 Missense_Mutation p.H470Y 0.48 tolerated(0.58) probably_damaging(0.99) TCGA-GN-A266-06 4 44176933 44176933 C T KCTD8 Silent p.E432E 0.55 TCGA-GN-A266-06 4 47647188 47647188 C T CORIN Missense_Mutation p.E623K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 4 48896040 48896040 G A OCIAD2 Missense_Mutation p.S83L 0.38 tolerated(0.25) possibly_damaging(0.877) TCGA-GN-A266-06 4 52860896 52860896 C T LRRC66 Silent p.G764G 0.57 TCGA-GN-A266-06 4 52861173 52861173 C T LRRC66 Missense_Mutation p.R672K 0.62 tolerated(1) benign(0.017) TCGA-GN-A266-06 4 52861265 52861265 G A LRRC66 Silent p.S641S 0.53 TCGA-GN-A266-06 4 52861266 52861266 G A LRRC66 Missense_Mutation p.S641F 0.53 deleterious(0.02) benign(0.047) TCGA-GN-A266-06 4 55156585 55156585 G A PDGFRA Missense_Mutation p.E996K 0.55 tolerated(0.55) possibly_damaging(0.905) TCGA-GN-A266-06 4 55970896 55970896 A T KDR Nonsense_Mutation p.L634* 0.43 TCGA-GN-A266-06 4 56458309 56458309 C T PDCL2 5'UTR 0.40 TCGA-GN-A266-06 4 56837483 56837483 C T CEP135 Silent p.L386L 0.22 TCGA-GN-A266-06 4 6303779 6303779 G A WFS1 Missense_Mutation p.E753K 0.28 tolerated(0.16) possibly_damaging(0.699) TCGA-GN-A266-06 4 65145751 65145751 T A TECRL 3'UTR 0.56 TCGA-GN-A266-06 4 67142602 67142602 G A MIR1269A RNA 0.56 TCGA-GN-A266-06 4 68795677 68795677 C T TMPRSS11A Silent p.K137K 0.19 TCGA-GN-A266-06 4 69185861 69185861 G A YTHDC1 Missense_Mutation p.P555L 0.60 deleterious(0) possibly_damaging(0.895) TCGA-GN-A266-06 4 69416504 69416504 C T UGT2B17 Missense_Mutation p.D402N 0.51 deleterious(0.02) benign(0.411) TCGA-GN-A266-06 4 69796481 69796481 G A UGT2A3 Missense_Mutation p.H363Y 0.53 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 4 69962950 69962950 G A UGT2B7 Missense_Mutation p.E238K 0.30 tolerated(0.25) benign(0.073) TCGA-GN-A266-06 4 71232443 71232443 G A SMR3A Missense_Mutation p.G46E 0.38 tolerated_low_confidence(0.48) unknown(0) TCGA-GN-A266-06 4 71232694 71232694 C T SMR3A Missense_Mutation p.P130S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 4 71510536 71510536 G A ENAM Silent p.Q1131Q 0.29 TCGA-GN-A266-06 4 73149396 73149396 G A ADAMTS3 Silent p.S1025S 0.38 TCGA-GN-A266-06 4 75938106 75938106 C T PARM1 Missense_Mutation p.S172F 0.37 deleterious(0) possibly_damaging(0.824) TCGA-GN-A266-06 4 76804350 76804350 C T PPEF2 Missense_Mutation p.G251D 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 4 77057383 77057383 G C NUP54 Missense_Mutation p.P160A 0.44 tolerated(0.27) benign(0.006) TCGA-GN-A266-06 4 78873665 78873665 C T MRPL1 Silent p.F294F 0.19 TCGA-GN-A266-06 4 79410226 79410226 G T FRAS1 Missense_Mutation p.G2984W 0.44 probably_damaging(1) TCGA-GN-A266-06 4 79440572 79440572 T A FRAS1 Missense_Mutation p.S3493T 0.52 probably_damaging(0.979) TCGA-GN-A266-06 4 79443817 79443817 G A FRAS1 Missense_Mutation p.E3555K 0.36 benign(0.035) TCGA-GN-A266-06 4 80329209 80329209 T C GK2 Missense_Mutation p.K49R 0.44 tolerated(0.56) benign(0.026) TCGA-GN-A266-06 4 81188190 81188190 G A FGF5 Missense_Mutation p.G71E 0.30 deleterious(0.04) possibly_damaging(0.554) TCGA-GN-A266-06 4 85674967 85674967 G A WDFY3 Silent p.F1874F 0.32 TCGA-GN-A266-06 4 87019692 87019692 A G MAPK10 Missense_Mutation p.F263L 0.57 deleterious(0.02) possibly_damaging(0.691) TCGA-GN-A266-06 4 87019693 87019693 G A MAPK10 Silent p.L262L 0.57 TCGA-GN-A266-06 4 88243985 88243985 G A HSD17B13 Silent p.I3I 0.71 TCGA-GN-A266-06 4 89608440 89608440 A T HERC3 Nonsense_Mutation p.K883* 0.60 TCGA-GN-A266-06 4 94006276 94006276 G A GRID2 Silent p.G125G 0.49 TCGA-GN-A266-06 4 94137898 94137898 G A GRID2 Missense_Mutation p.D267N 0.46 deleterious(0.01) probably_damaging(0.971) TCGA-GN-A266-06 4 94436461 94436461 C T GRID2 Missense_Mutation p.P698S 0.70 deleterious(0.01) probably_damaging(0.963) TCGA-GN-A266-06 4 9452214 9452214 G A DEFB131 Missense_Mutation p.E63K 0.47 deleterious_low_confidence(0.04) benign(0.292) TCGA-GN-A266-06 4 96761419 96761419 G A PDHA2 Missense_Mutation p.D40N 0.47 deleterious(0.02) possibly_damaging(0.484) TCGA-GN-A266-06 4 9828112 9828112 C T SLC2A9 Missense_Mutation p.S511N 0.44 tolerated(0.52) benign(0.12) TCGA-GN-A266-06 5 100222183 100222183 C T ST8SIA4 Missense_Mutation p.D123N 0.25 benign(0.002) TCGA-GN-A266-06 5 101576466 101576466 C T SLCO4C1 Missense_Mutation p.R611Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 5 101755635 101755635 C T SLCO6A1 Missense_Mutation p.R456K 0.15 tolerated(0.19) benign(0.026) TCGA-GN-A266-06 5 101834348 101834348 C T SLCO6A1 Silent p.R67R 0.27 TCGA-GN-A266-06 5 101834439 101834439 C T SLCO6A1 Missense_Mutation p.G37E 0.20 tolerated(1) benign(0) TCGA-GN-A266-06 5 10256136 10256136 C T CCT5 Missense_Mutation p.A134V 0.40 deleterious(0.02) possibly_damaging(0.89) TCGA-GN-A266-06 5 10426625 10426625 C T MARCH6 Missense_Mutation p.P833S 0.30 deleterious(0.04) possibly_damaging(0.742) TCGA-GN-A266-06 5 10465004 10465004 T A ROPN1L Missense_Mutation p.F213Y 0.35 tolerated(1) benign(0.004) TCGA-GN-A266-06 5 110411797 110411797 C T TSLP 3'UTR 0.17 TCGA-GN-A266-06 5 110427976 110427976 G A WDR36 5'UTR 0.22 TCGA-GN-A266-06 5 110820024 110820024 G A CAMK4 Missense_Mutation p.A428T 0.23 tolerated_low_confidence(0.24) benign(0.002) TCGA-GN-A266-06 5 110820078 110820078 G A CAMK4 Missense_Mutation p.E446K 0.18 deleterious_low_confidence(0.01) benign(0.185) TCGA-GN-A266-06 5 110835597 110835597 C T STARD4 Missense_Mutation p.R202Q 0.20 tolerated(1) benign(0.014) TCGA-GN-A266-06 5 111066616 111066616 G A NREP 3'UTR 0.24 TCGA-GN-A266-06 5 11111000 11111000 C T CTNND2 Silent p.K811K 0.25 TCGA-GN-A266-06 5 112868723 112868723 C T YTHDC2 Nonsense_Mutation p.Q275* 0.43 TCGA-GN-A266-06 5 115335539 115335539 G A AQPEP Silent p.K485K 0.31 TCGA-GN-A266-06 5 11565118 11565118 G A CTNND2 Silent p.I75I 0.30 TCGA-GN-A266-06 5 118485031 118485031 G A DMXL1 Missense_Mutation p.G1170D 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A266-06 5 118969875 118969875 G A FAM170A Silent p.E144E 0.33 TCGA-GN-A266-06 5 121780306 121780306 G A SNCAIP Missense_Mutation p.E491K 0.23 deleterious(0.03) possibly_damaging(0.626) TCGA-GN-A266-06 5 121786323 121786323 G A SNCAIP Missense_Mutation p.G594E 0.25 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 5 1239564 1239564 G A SLC6A18 Splice_Site p.X245_splice 0.22 TCGA-GN-A266-06 5 127728929 127728929 C T FBN2 Missense_Mutation p.G455E 0.20 tolerated(0.27) benign(0.433) TCGA-GN-A266-06 5 127855039 127855039 C T FBN2 Silent p.Q185Q 0.37 TCGA-GN-A266-06 5 128864230 128864230 G A ADAMTS19 Silent p.G390G 0.23 TCGA-GN-A266-06 5 132161789 132161789 G A SHROOM1 Missense_Mutation p.S15L 0.22 deleterious(0) benign(0.267) TCGA-GN-A266-06 5 132197865 132197865 G A GDF9 Missense_Mutation p.P261S 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 5 135392410 135392410 G A TGFBI Missense_Mutation p.G535E 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 5 13692125 13692125 G A DNAH5 Missense_Mutation p.R4615C 0.20 possibly_damaging(0.898) TCGA-GN-A266-06 5 13719031 13719031 A T DNAH5 Silent p.P4153P 0.36 TCGA-GN-A266-06 5 13721267 13721267 G A DNAH5 Missense_Mutation p.P4041S 0.19 possibly_damaging(0.876) TCGA-GN-A266-06 5 137217680 137217680 G A MYOT Silent p.R234R 0.35 TCGA-GN-A266-06 5 13727761 13727761 G A DNAH5 Missense_Mutation p.S3963L 0.31 possibly_damaging(0.651) TCGA-GN-A266-06 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.31 TCGA-GN-A266-06 5 13793772 13793772 C T DNAH5 Silent p.G2692G 0.14 TCGA-GN-A266-06 5 13793832 13793832 C T DNAH5 Silent p.T2672T 0.20 TCGA-GN-A266-06 5 13817700 13817700 C T DNAH5 Silent p.G2315G 0.29 TCGA-GN-A266-06 5 13841984 13841984 A T DNAH5 Silent p.S1767S 0.27 TCGA-GN-A266-06 5 13865808 13865808 T A DNAH5 Missense_Mutation p.I1442F 0.30 possibly_damaging(0.537) TCGA-GN-A266-06 5 13882846 13882846 C T DNAH5 Missense_Mutation p.E1085K 0.21 benign(0.292) TCGA-GN-A266-06 5 13900509 13900509 G A DNAH5 Missense_Mutation p.H689Y 0.20 benign(0.415) TCGA-GN-A266-06 5 139060274 139060274 C T CXXC5 Missense_Mutation p.P56S 0.25 tolerated(0.41) benign(0.081) TCGA-GN-A266-06 5 139193879 139193879 C T PSD2 Missense_Mutation p.R316W 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 5 139221957 139221957 G A PSD2 Silent p.G738G 0.31 TCGA-GN-A266-06 5 139946813 139946813 C T SLC35A4 Missense_Mutation p.T20I 0.23 tolerated(0.23) benign(0.003) TCGA-GN-A266-06 5 140062742 140062742 G A HARS Silent p.I81I 0.25 TCGA-GN-A266-06 5 140166226 140166226 C T PCDHA1 Silent p.F117F 0.15 TCGA-GN-A266-06 5 140175833 140175833 G A PCDHA2 Silent p.R428R 0.26 TCGA-GN-A266-06 5 140201466 140201466 G A PCDHA5 Missense_Mutation p.E36K 0.25 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GN-A266-06 5 140208481 140208481 C T PCDHA6 Missense_Mutation p.R269W 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.871) TCGA-GN-A266-06 5 140209591 140209591 G A PCDHA6 Missense_Mutation p.E639K 0.23 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-GN-A266-06 5 140214295 140214295 C T PCDHA7 Silent p.I109I 0.18 TCGA-GN-A266-06 5 140215258 140215258 G A PCDHA7 Silent p.G430G 0.22 TCGA-GN-A266-06 5 140215259 140215259 G A PCDHA7 Missense_Mutation p.G431S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-GN-A266-06 5 140222568 140222568 C T PCDHA8 Silent p.F554F 0.28 TCGA-GN-A266-06 5 140222729 140222729 C T PCDHA8 Missense_Mutation p.S608L 0.22 tolerated_low_confidence(0.05) benign(0.411) TCGA-GN-A266-06 5 140228407 140228407 C T PCDHA9 Silent p.I109I 0.40 TCGA-GN-A266-06 5 140248751 140248751 C T PCDHA11 Silent p.L21L 0.12 TCGA-GN-A266-06 5 140248800 140248800 G A PCDHA11 Missense_Mutation p.E38K 0.10 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-GN-A266-06 5 140248801 140248801 A C PCDHA11 Missense_Mutation p.E38A 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 5 140307560 140307560 C T PCDHAC1 Silent p.L361L 0.30 TCGA-GN-A266-06 5 140431463 140431463 G A PCDHB1 Silent p.K136K 0.23 TCGA-GN-A266-06 5 140475257 140475257 C T PCDHB2 Nonsense_Mutation p.R295* 0.15 TCGA-GN-A266-06 5 140475301 140475301 G A PCDHB2 Silent p.L309L 0.28 TCGA-GN-A266-06 5 140480638 140480638 A C PCDHB3 Missense_Mutation p.E135D 0.38 tolerated_low_confidence(1) benign(0) TCGA-GN-A266-06 5 140480965 140480965 G A PCDHB3 Silent p.Q244Q 0.23 TCGA-GN-A266-06 5 140502130 140502130 C T PCDHB4 Missense_Mutation p.H184Y 0.38 tolerated(0.11) benign(0.04) TCGA-GN-A266-06 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A266-06 5 140515473 140515473 C T PCDHB5 Missense_Mutation p.P153S 0.20 tolerated_low_confidence(0.14) benign(0.091) TCGA-GN-A266-06 5 140517124 140517124 C T PCDHB5 Missense_Mutation p.S703L 0.23 deleterious_low_confidence(0) benign(0.287) TCGA-GN-A266-06 5 140530066 140530066 T C PCDHB6 Silent p.F76F 0.25 TCGA-GN-A266-06 5 140530067 140530067 G T PCDHB6 Missense_Mutation p.D77Y 0.25 deleterious(0) possibly_damaging(0.908) TCGA-GN-A266-06 5 140537499 140537499 C T PCDHB17 3'UTR 0.50 TCGA-GN-A266-06 5 140558180 140558180 G A PCDHB8 Missense_Mutation p.G189S 0.21 deleterious_low_confidence(0) benign(0.441) TCGA-GN-A266-06 5 140558812 140558812 G A PCDHB8 Silent p.G399G 0.31 TCGA-GN-A266-06 5 140563698 140563698 G A PCDHB16 Missense_Mutation p.E522K 0.18 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-GN-A266-06 5 140563715 140563715 C T PCDHB16 Silent p.F527F 0.30 TCGA-GN-A266-06 5 140590609 140590609 G A PCDHB12 Silent p.A710A 0.24 TCGA-GN-A266-06 5 140595499 140595499 C T PCDHB13 Silent p.L602L 0.14 TCGA-GN-A266-06 5 140603086 140603086 C T PCDHB14 Silent p.I3I 0.21 TCGA-GN-A266-06 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.26 tolerated_low_confidence(0.23) benign(0.002) TCGA-GN-A266-06 5 140625948 140625948 G A PCDHB15 Missense_Mutation p.D268N 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A266-06 5 140682711 140682711 G A SLC25A2 Missense_Mutation p.S241F 0.14 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 5 140711178 140711178 C T PCDHGA1 Silent p.F309F 0.36 TCGA-GN-A266-06 5 140712038 140712038 G A PCDHGA1 Missense_Mutation p.R596K 0.12 tolerated_low_confidence(0.22) benign(0.042) TCGA-GN-A266-06 5 140712378 140712378 C T PCDHGA1 Silent p.I709I 0.23 TCGA-GN-A266-06 5 140750859 140750859 G A PCDHGB3 Missense_Mutation p.E300K 0.24 tolerated(0.15) possibly_damaging(0.492) TCGA-GN-A266-06 5 140752214 140752214 C T PCDHGB3 Silent p.S751S 0.28 TCGA-GN-A266-06 5 140753757 140753757 C T PCDHGA6 Missense_Mutation p.P36L 0.48 tolerated_low_confidence(0.08) benign(0.232) TCGA-GN-A266-06 5 140762917 140762917 C T PCDHGA7 Missense_Mutation p.R151W 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 5 140812029 140812029 C T PCDHGA12 Missense_Mutation p.P568L 0.21 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-GN-A266-06 5 140908358 140908358 G A DIAPH1 Silent p.L977L 0.34 TCGA-GN-A266-06 5 140908359 140908359 G A DIAPH1 Silent p.L976L 0.33 TCGA-GN-A266-06 5 140954622 140954622 C T DIAPH1 Missense_Mutation p.G518E 0.21 unknown(0) TCGA-GN-A266-06 5 140954623 140954623 C T DIAPH1 Missense_Mutation p.G518R 0.20 unknown(0) TCGA-GN-A266-06 5 141336751 141336751 G A PCDH12 Silent p.P222P 0.24 TCGA-GN-A266-06 5 142779717 142779717 C T NR3C1 Missense_Mutation p.G230R 0.23 deleterious_low_confidence(0.01) benign(0.278) TCGA-GN-A266-06 5 142779718 142779718 C T NR3C1 Silent p.A229A 0.22 TCGA-GN-A266-06 5 143586772 143586772 C T KCTD16 Silent p.F165F 0.24 TCGA-GN-A266-06 5 145246183 145246183 C T GRXCR2 Missense_Mutation p.E149K 0.23 tolerated(0.16) benign(0.073) TCGA-GN-A266-06 5 145252280 145252280 C T GRXCR2 Silent p.R84R 0.16 TCGA-GN-A266-06 5 145252310 145252310 C T GRXCR2 Silent p.Q74Q 0.23 TCGA-GN-A266-06 5 145442197 145442197 C T SH3RF2 Missense_Mutation p.A708V 0.20 tolerated_low_confidence(0.21) benign(0.002) TCGA-GN-A266-06 5 145608560 145608560 C T RBM27 Missense_Mutation p.P119S 0.28 tolerated(1) benign(0.001) TCGA-GN-A266-06 5 14607445 14607445 G A FAM105A Missense_Mutation p.E169K 0.30 tolerated(0.13) probably_damaging(0.997) TCGA-GN-A266-06 5 147477514 147477514 G A SPINK5 Missense_Mutation p.G323R 0.32 deleterious(0) possibly_damaging(0.82) TCGA-GN-A266-06 5 147480076 147480076 G A SPINK5 Silent p.E384E 0.37 TCGA-GN-A266-06 5 147486600 147486600 G A SPINK5 Missense_Mutation p.E494K 0.21 tolerated(0.05) possibly_damaging(0.757) TCGA-GN-A266-06 5 147506638 147506638 C T SPINK5 Missense_Mutation p.S1017F 0.24 deleterious(0.03) benign(0.149) TCGA-GN-A266-06 5 147506639 147506639 T G SPINK5 Silent p.S1017S 0.21 TCGA-GN-A266-06 5 14758692 14758692 C T ANKH Missense_Mutation p.G110E 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 5 147900484 147900484 C T HTR4 Intron 0.27 TCGA-GN-A266-06 5 149008485 149008485 G A ARHGEF37 Missense_Mutation p.E592K 0.17 tolerated(0.18) benign(0.197) TCGA-GN-A266-06 5 149449566 149449566 C T CSF1R Silent p.Q460Q 0.27 TCGA-GN-A266-06 5 149452973 149452973 C T CSF1R Missense_Mutation p.V325M 0.26 deleterious(0) benign(0.213) TCGA-GN-A266-06 5 149499604 149499604 C T PDGFRB Missense_Mutation p.G890E 0.17 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 5 149506146 149506146 G A PDGFRB Silent p.A537A 0.24 TCGA-GN-A266-06 5 149563133 149563133 G A CDX1 Missense_Mutation p.D230N 0.29 tolerated_low_confidence(0.72) benign(0.001) TCGA-GN-A266-06 5 150028986 150028986 C T SYNPO Silent p.F627F 0.29 TCGA-GN-A266-06 5 150275445 150275445 G A ZNF300 Silent p.L468L 0.18 TCGA-GN-A266-06 5 150411874 150411874 G A TNIP1 Missense_Mutation p.P617L 0.24 tolerated_low_confidence(0.15) benign(0.003) TCGA-GN-A266-06 5 150889622 150889622 C T FAT2 Missense_Mutation p.G4007R 0.15 probably_damaging(0.991) TCGA-GN-A266-06 5 151045993 151045993 C G SPARC Missense_Mutation p.E221D 0.31 deleterious(0.03) benign(0.002) TCGA-GN-A266-06 5 151202345 151202345 C T GLRA1 Silent p.K421K 0.22 TCGA-GN-A266-06 5 151771986 151771986 G A NMUR2 Silent p.F338F 0.25 TCGA-GN-A266-06 5 151784180 151784180 C T NMUR2 Silent p.R165R 0.18 TCGA-GN-A266-06 5 151784264 151784264 G A NMUR2 Silent p.I137I 0.22 TCGA-GN-A266-06 5 151784302 151784302 G A NMUR2 Missense_Mutation p.L125F 0.24 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 5 151784563 151784563 C T NMUR2 Missense_Mutation p.G38R 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 5 151784718 151784718 C T NMUR2 5'UTR 0.20 TCGA-GN-A266-06 5 152873489 152873489 G A GRIA1 Nonsense_Mutation p.W38* 0.26 TCGA-GN-A266-06 5 153065888 153065888 A T GRIA1 Missense_Mutation p.K388M 0.24 deleterious(0) possibly_damaging(0.767) TCGA-GN-A266-06 5 153149834 153149834 C T GRIA1 Missense_Mutation p.S720F 0.14 deleterious(0) possibly_damaging(0.839) TCGA-GN-A266-06 5 153190776 153190776 G A GRIA1 Silent p.T914T 0.24 TCGA-GN-A266-06 5 153190777 153190777 G A GRIA1 Missense_Mutation p.G915R 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.729) TCGA-GN-A266-06 5 154282694 154282694 G A GEMIN5 Missense_Mutation p.H892Y 0.18 deleterious(0) probably_damaging(0.98) TCGA-GN-A266-06 5 156346329 156346329 C T TIMD4 3'UTR 0.47 TCGA-GN-A266-06 5 156375506 156375506 G A TIMD4 Silent p.S255S 0.23 TCGA-GN-A266-06 5 156378590 156378590 G A TIMD4 Silent p.T204T 0.21 TCGA-GN-A266-06 5 156484965 156484965 G A HAVCR1 5'UTR 0.15 TCGA-GN-A266-06 5 156589953 156589953 C T FAM71B Silent p.R441R 0.23 TCGA-GN-A266-06 5 156667124 156667124 C T ITK Missense_Mutation p.P302S 0.21 deleterious(0.01) possibly_damaging(0.842) TCGA-GN-A266-06 5 156770295 156770295 G A FNDC9 Missense_Mutation p.P84S 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-GN-A266-06 5 156787375 156787375 C T CYFIP2 Missense_Mutation p.S942F 0.24 deleterious(0) probably_damaging(0.926) TCGA-GN-A266-06 5 156991385 156991385 T A ADAM19 Missense_Mutation p.N83Y 0.35 deleterious(0) probably_damaging(0.98) TCGA-GN-A266-06 5 157216574 157216574 G A CLINT1 Missense_Mutation p.P461L 0.34 tolerated(0.24) possibly_damaging(0.725) TCGA-GN-A266-06 5 158204487 158204487 C T EBF1 Missense_Mutation p.E324K 0.20 deleterious(0.05) benign(0.142) TCGA-GN-A266-06 5 159344660 159344660 G A ADRA1B Missense_Mutation p.E250K 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A266-06 5 159520234 159520234 G A PWWP2A Missense_Mutation p.R475C 0.37 deleterious(0.01) possibly_damaging(0.489) TCGA-GN-A266-06 5 159520276 159520276 G A PWWP2A Nonsense_Mutation p.R461* 0.21 TCGA-GN-A266-06 5 159686609 159686609 G A CCNJL Silent p.F198F 0.14 TCGA-GN-A266-06 5 160061514 160061514 C T ATP10B Missense_Mutation p.D410N 0.28 deleterious(0.05) benign(0.165) TCGA-GN-A266-06 5 161569261 161569261 C T GABRG2 Silent p.V327V 0.16 TCGA-GN-A266-06 5 161927 161927 G A PLEKHG4B Silent p.A483A 0.29 TCGA-GN-A266-06 5 161961 161961 C T PLEKHG4B Nonsense_Mutation p.Q495* 0.19 TCGA-GN-A266-06 5 16453243 16453243 G A ZNF622 Silent p.S395S 0.19 TCGA-GN-A266-06 5 16465783 16465783 G A ZNF622 5'UTR 0.13 TCGA-GN-A266-06 5 167182030 167182030 G A TENM2 Intron 0.18 TCGA-GN-A266-06 5 167489213 167489213 G A TENM2 Silent p.G486G 0.29 TCGA-GN-A266-06 5 167517634 167517634 C T TENM2 Missense_Mutation p.P524L 0.10 tolerated(0.18) benign(0.165) TCGA-GN-A266-06 5 167915660 167915660 C T RARS Silent p.G33G 0.25 TCGA-GN-A266-06 5 167944974 167944974 C T RARS Missense_Mutation p.L594F 0.24 tolerated(0.15) probably_damaging(0.952) TCGA-GN-A266-06 5 168123338 168123338 C T SLIT3 Missense_Mutation p.G1014E 0.31 tolerated(0.08) probably_damaging(1) TCGA-GN-A266-06 5 168135005 168135005 G A SLIT3 Silent p.R940R 0.26 TCGA-GN-A266-06 5 168151456 168151456 G A SLIT3 Silent p.P768P 0.31 TCGA-GN-A266-06 5 168189647 168189647 G A SLIT3 Missense_Mutation p.L503F 0.16 tolerated(0.08) benign(0.038) TCGA-GN-A266-06 5 168678442 168678442 G A SLIT3 Silent p.I73I 0.17 TCGA-GN-A266-06 5 169461457 169461457 C T DOCK2 Silent p.F1174F 0.26 TCGA-GN-A266-06 5 169474608 169474608 C T DOCK2 Missense_Mutation p.S1354F 0.32 deleterious(0) benign(0.39) TCGA-GN-A266-06 5 169477382 169477382 G A DOCK2 Silent p.V1398V 0.20 TCGA-GN-A266-06 5 169805759 169805759 G A KCNMB1 Silent p.I175I 0.14 TCGA-GN-A266-06 5 170222290 170222290 C T GABRP Silent p.L107L 0.22 TCGA-GN-A266-06 5 170235728 170235728 C T GABRP Silent p.L268L 0.11 TCGA-GN-A266-06 5 171766262 171766262 G A SH3PXD2B Missense_Mutation p.S616F 0.33 deleterious(0.02) benign(0.187) TCGA-GN-A266-06 5 174869920 174869920 G A DRD1 Silent p.F61F 0.19 TCGA-GN-A266-06 5 176306320 176306320 T C UNC5A Missense_Mutation p.F732L 0.27 tolerated(0.69) benign(0.005) TCGA-GN-A266-06 5 176637091 176637091 C T NSD1 Missense_Mutation p.A564V 0.31 deleterious_low_confidence(0.03) benign(0.004) TCGA-GN-A266-06 5 176638012 176638012 C T NSD1 Missense_Mutation p.S871F 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GN-A266-06 5 176734770 176734770 C T MXD3 Intron 0.31 TCGA-GN-A266-06 5 176734771 176734771 G A MXD3 Intron 0.33 TCGA-GN-A266-06 5 176812804 176812804 G A SLC34A1 Missense_Mutation p.G21E 0.13 deleterious_low_confidence(0.03) benign(0.21) TCGA-GN-A266-06 5 178392789 178392789 C T ZNF454 Missense_Mutation p.H462Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 5 178541003 178541003 G A ADAMTS2 Silent p.I1167I 0.23 TCGA-GN-A266-06 5 179318397 179318397 G A TBC1D9B Silent p.L342L 0.19 TCGA-GN-A266-06 5 179555543 179555543 C T RASGEF1C Missense_Mutation p.G169E 0.25 tolerated(0.19) benign(0.006) TCGA-GN-A266-06 5 180166517 180166517 G A OR2Y1 Missense_Mutation p.P181L 0.33 tolerated(0.07) benign(0.424) TCGA-GN-A266-06 5 180166600 180166600 G A OR2Y1 Silent p.F153F 0.22 TCGA-GN-A266-06 5 180166621 180166621 G A OR2Y1 Silent p.I146I 0.32 TCGA-GN-A266-06 5 180338436 180338436 G A BTNL8 Silent p.A165A 0.22 TCGA-GN-A266-06 5 180338455 180338455 G A BTNL8 Missense_Mutation p.G172R 0.24 deleterious(0) probably_damaging(0.97) TCGA-GN-A266-06 5 180432455 180432455 G C BTNL3 Missense_Mutation p.K328N 0.21 tolerated(0.07) probably_damaging(0.963) TCGA-GN-A266-06 5 19473628 19473628 C T CDH18 Missense_Mutation p.E694K 0.50 deleterious(0.02) benign(0.26) TCGA-GN-A266-06 5 19571923 19571923 T G CDH18 Missense_Mutation p.K340Q 0.29 tolerated(0.14) possibly_damaging(0.576) TCGA-GN-A266-06 5 19839130 19839130 C T CDH18 5'UTR 0.47 TCGA-GN-A266-06 5 24505229 24505229 G A CDH10 Missense_Mutation p.A462V 0.38 tolerated(0.1) benign(0.038) TCGA-GN-A266-06 5 24535818 24535818 C T CDH10 Missense_Mutation p.E214K 0.13 tolerated(1) benign(0.205) TCGA-GN-A266-06 5 26988489 26988489 C T CDH9 Intron 0.35 TCGA-GN-A266-06 5 31451648 31451648 G A DROSHA Silent p.L892L 0.21 TCGA-GN-A266-06 5 32000348 32000348 G A PDZD2 Missense_Mutation p.G409R 0.18 deleterious(0) probably_damaging(0.95) TCGA-GN-A266-06 5 32071494 32071494 C T PDZD2 Silent p.T846T 0.23 TCGA-GN-A266-06 5 32087274 32087274 G A PDZD2 Silent p.G1240G 0.22 TCGA-GN-A266-06 5 33576787 33576787 G A ADAMTS12 Missense_Mutation p.S1115L 0.35 tolerated(0.05) benign(0.004) TCGA-GN-A266-06 5 33616128 33616128 C T ADAMTS12 Silent p.V731V 0.21 TCGA-GN-A266-06 5 33964039 33964039 G A SLC45A2 Silent p.F215F 0.32 TCGA-GN-A266-06 5 35066041 35066041 G A PRLR Missense_Mutation p.P340L 0.12 tolerated(0.92) benign(0.01) TCGA-GN-A266-06 5 35066042 35066042 G A PRLR Missense_Mutation p.P340S 0.35 tolerated(0.15) benign(0.01) TCGA-GN-A266-06 5 35066066 35066066 C A PRLR Nonsense_Mutation p.E332* 0.34 TCGA-GN-A266-06 5 35727890 35727890 G A SPEF2 Missense_Mutation p.E1010K 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-GN-A266-06 5 35727893 35727893 G A SPEF2 Missense_Mutation p.E1011K 0.34 tolerated(0.09) possibly_damaging(0.76) TCGA-GN-A266-06 5 35954226 35954226 G A UGT3A1 3'UTR 0.30 TCGA-GN-A266-06 5 36677139 36677139 T G SLC1A3 Missense_Mutation p.V238G 0.22 tolerated(0.05) possibly_damaging(0.507) TCGA-GN-A266-06 5 36680625 36680625 T G SLC1A3 Missense_Mutation p.L408W 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 5 38406325 38406325 G T EGFLAM Missense_Mutation p.L270F 0.17 tolerated_low_confidence(0.42) benign(0.009) TCGA-GN-A266-06 5 38406334 38406334 C T EGFLAM Silent p.S273S 0.17 TCGA-GN-A266-06 5 38464033 38464033 C T EGFLAM Missense_Mutation p.S1000F 0.31 tolerated(0.05) possibly_damaging(0.677) TCGA-GN-A266-06 5 39289047 39289047 G A C9 Missense_Mutation p.P475S 0.36 deleterious(0.01) probably_damaging(0.941) TCGA-GN-A266-06 5 39376948 39376948 C T DAB2 Silent p.E647E 0.22 TCGA-GN-A266-06 5 39381674 39381674 G A DAB2 Silent p.P462P 0.17 TCGA-GN-A266-06 5 39390557 39390557 T A DAB2 Missense_Mutation p.T151S 0.25 deleterious(0) possibly_damaging(0.831) TCGA-GN-A266-06 5 40835319 40835319 G A RPL37 5'UTR 0.39 TCGA-GN-A266-06 5 40955533 40955533 G A C7 Missense_Mutation p.G380R 0.28 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 5 40955534 40955534 G A C7 Missense_Mutation p.G380E 0.28 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 5 41052574 41052574 C T MROH2B Missense_Mutation p.R408K 0.10 tolerated(1) benign(0.001) TCGA-GN-A266-06 5 41058294 41058294 G A MROH2B Silent p.I209I 0.33 TCGA-GN-A266-06 5 41065475 41065475 C T MROH2B Missense_Mutation p.E107K 0.27 tolerated(0.26) possibly_damaging(0.754) TCGA-GN-A266-06 5 41186300 41186300 G A C6 Silent p.L200L 0.14 TCGA-GN-A266-06 5 42718801 42718801 G A GHR Missense_Mutation p.D398N 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 5 45396623 45396623 C T HCN1 Missense_Mutation p.D401N 0.24 deleterious(0.02) benign(0.212) TCGA-GN-A266-06 5 482666 482666 G A SLC9A3 Silent p.F451F 0.27 TCGA-GN-A266-06 5 49701599 49701599 G A EMB Missense_Mutation p.P187L 0.34 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 5 50057655 50057655 G A PARP8 Missense_Mutation p.E116K 0.22 tolerated_low_confidence(0.19) benign(0.069) TCGA-GN-A266-06 5 50084408 50084408 G A PARP8 Missense_Mutation p.G241E 0.24 deleterious(0) possibly_damaging(0.566) TCGA-GN-A266-06 5 50117146 50117146 C T PARP8 Missense_Mutation p.P590S 0.16 tolerated(0.17) benign(0.065) TCGA-GN-A266-06 5 50687127 50687127 G A ISL1 Missense_Mutation p.G262E 0.28 deleterious(0.03) benign(0.303) TCGA-GN-A266-06 5 5235159 5235159 C T ADAMTS16 Missense_Mutation p.S628F 0.13 deleterious(0) probably_damaging(0.93) TCGA-GN-A266-06 5 52374689 52374689 C T ITGA2 Silent p.F971F 0.41 TCGA-GN-A266-06 5 54404140 54404140 G A GZMA Missense_Mutation p.R182Q 0.15 tolerated(0.71) benign(0) TCGA-GN-A266-06 5 54420698 54420698 G A CDC20B Missense_Mutation p.P383L 0.30 deleterious(0) benign(0.132) TCGA-GN-A266-06 5 54579186 54579186 G A DHX29 Nonsense_Mutation p.Q604* 0.34 TCGA-GN-A266-06 5 55407155 55407155 G A ANKRD55 Nonsense_Mutation p.R474* 0.25 TCGA-GN-A266-06 5 57790634 57790634 G A GAPT Missense_Mutation p.D91N 0.16 tolerated(0.58) benign(0) TCGA-GN-A266-06 5 63257112 63257112 C T HTR1A Silent p.V145V 0.20 TCGA-GN-A266-06 5 63802466 63802466 G A RGS7BP Silent p.P5P 0.29 TCGA-GN-A266-06 5 63890621 63890621 C T RGS7BP Missense_Mutation p.S183L 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-GN-A266-06 5 64483966 64483966 C T ADAMTS6 Silent p.K929K 0.16 TCGA-GN-A266-06 5 70308365 70308365 G A NAIP Silent p.F126F 0.20 TCGA-GN-A266-06 5 71411610 71411610 C G MAP1B Missense_Mutation p.F90L 0.28 unknown(0) TCGA-GN-A266-06 5 71494054 71494054 C T MAP1B Silent p.F1624F 0.23 TCGA-GN-A266-06 5 71516740 71516740 G C MRPS27 Missense_Mutation p.A414G 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A266-06 5 71756184 71756184 C T ZNF366 Silent p.L380L 0.25 TCGA-GN-A266-06 5 72333013 72333013 C T FCHO2 Silent p.I295I 0.27 TCGA-GN-A266-06 5 75594650 75594650 T A SV2C Missense_Mutation p.F512I 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 5 75596660 75596660 G A SV2C Nonsense_Mutation p.W581* 0.27 TCGA-GN-A266-06 5 75596681 75596681 G A SV2C Silent p.L588L 0.36 TCGA-GN-A266-06 5 75914292 75914292 C T F2RL2 Silent p.V80V 0.21 TCGA-GN-A266-06 5 76028198 76028198 G A F2R Missense_Mutation p.D50N 0.12 tolerated(0.12) benign(0.002) TCGA-GN-A266-06 5 76128626 76128626 C T F2RL1 Missense_Mutation p.S65F 0.23 deleterious(0) possibly_damaging(0.6) TCGA-GN-A266-06 5 76714114 76714114 G A PDE8B Missense_Mutation p.D658N 0.19 deleterious(0) probably_damaging(0.91) TCGA-GN-A266-06 5 77423960 77423960 G T AP3B1 Missense_Mutation p.T621N 0.37 deleterious(0) possibly_damaging(0.696) TCGA-GN-A266-06 5 79026948 79026948 G A CMYA5 Missense_Mutation p.G787E 0.31 possibly_damaging(0.461) TCGA-GN-A266-06 5 79033450 79033450 G A CMYA5 Silent p.L2954L 0.30 TCGA-GN-A266-06 5 79363879 79363879 C T THBS4 Silent p.N426N 0.13 TCGA-GN-A266-06 5 79375868 79375868 C T THBS4 Silent p.F884F 0.53 TCGA-GN-A266-06 5 80064787 80064787 C T MSH3 Missense_Mutation p.P740S 0.13 tolerated(0.1) possibly_damaging(0.856) TCGA-GN-A266-06 5 80382676 80382676 G A RASGRF2 Missense_Mutation p.D432N 0.18 deleterious(0) possibly_damaging(0.796) TCGA-GN-A266-06 5 80643737 80643737 T A ACOT12 Missense_Mutation p.D170V 0.25 tolerated(0.25) benign(0.051) TCGA-GN-A266-06 5 82832870 82832870 G A VCAN Missense_Mutation p.E1350K 0.10 deleterious(0) possibly_damaging(0.844) TCGA-GN-A266-06 5 82833764 82833764 G T VCAN Missense_Mutation p.D1648Y 0.33 tolerated(1) benign(0.001) TCGA-GN-A266-06 5 82850796 82850796 G A VCAN Nonsense_Mutation p.W3225* 0.21 TCGA-GN-A266-06 5 82940236 82940236 A G HAPLN1 Missense_Mutation p.W241R 0.18 tolerated(1) benign(0) TCGA-GN-A266-06 5 85578703 85578703 G A NBPF22P RNA 0.39 TCGA-GN-A266-06 5 90001301 90001301 G A GPR98 Missense_Mutation p.G2824E 0.20 probably_damaging(0.999) TCGA-GN-A266-06 5 90136463 90136463 G A GPR98 Silent p.V5560V 0.13 TCGA-GN-A266-06 5 9042978 9042978 G A SEMA5A 3'UTR 0.21 TCGA-GN-A266-06 5 90449127 90449127 C T GPR98 Silent p.F6238F 0.38 TCGA-GN-A266-06 5 9063102 9063102 C T SEMA5A Silent p.R805R 0.25 TCGA-GN-A266-06 5 93077220 93077220 C T POU5F2 Missense_Mutation p.G17D 0.30 tolerated(0.08) probably_damaging(0.931) TCGA-GN-A266-06 5 94749851 94749851 A G FAM81B Missense_Mutation p.Q165R 0.20 tolerated(0.24) possibly_damaging(0.701) TCGA-GN-A266-06 5 95728663 95728663 G A PCSK1 3'UTR 0.20 TCGA-GN-A266-06 5 95733144 95733144 C T PCSK1 Missense_Mutation p.E540K 0.15 tolerated(0.79) benign(0.047) TCGA-GN-A266-06 5 95734703 95734703 G A PCSK1 Missense_Mutation p.P490S 0.31 tolerated(0.49) benign(0.008) TCGA-GN-A266-06 6 100897528 100897528 G A SIM1 Silent p.D132D 0.22 TCGA-GN-A266-06 6 102124583 102124583 G A GRIK2 Silent p.K209K 0.29 TCGA-GN-A266-06 6 102250215 102250215 G A GRIK2 Missense_Mutation p.E369K 0.31 tolerated(0.67) benign(0.099) TCGA-GN-A266-06 6 102307279 102307279 G A GRIK2 Missense_Mutation p.E479K 0.27 tolerated(0.44) possibly_damaging(0.714) TCGA-GN-A266-06 6 102483362 102483362 T G GRIK2 Missense_Mutation p.F744L 0.24 deleterious(0) possibly_damaging(0.482) TCGA-GN-A266-06 6 105406086 105406086 G A LIN28B Missense_Mutation p.M41I 0.37 deleterious(0.01) benign(0.322) TCGA-GN-A266-06 6 105474336 105474336 A T LIN28B Missense_Mutation p.K121I 0.33 deleterious(0) probably_damaging(0.921) TCGA-GN-A266-06 6 105526491 105526491 G A LIN28B Missense_Mutation p.G196R 0.38 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-GN-A266-06 6 105606500 105606500 C T POPDC3 Missense_Mutation p.D241N 0.32 tolerated(0.1) possibly_damaging(0.805) TCGA-GN-A266-06 6 105606598 105606598 C T POPDC3 Missense_Mutation p.R208Q 0.10 tolerated(0.15) probably_damaging(0.985) TCGA-GN-A266-06 6 105726130 105726130 C T PREP Silent p.V674V 0.30 TCGA-GN-A266-06 6 106546964 106546964 G A PRDM1 Intron 0.29 TCGA-GN-A266-06 6 106555389 106555389 C T PRDM1 3'UTR 0.52 TCGA-GN-A266-06 6 107390735 107390735 G A BEND3 Silent p.L554L 0.35 TCGA-GN-A266-06 6 108041866 108041866 G A SCML4 Intron 0.36 TCGA-GN-A266-06 6 10876690 10876690 C T GCM2 Silent p.A148A 0.22 TCGA-GN-A266-06 6 108984918 108984918 C T FOXO3 Silent p.S294S 0.17 TCGA-GN-A266-06 6 109319812 109319812 G A SESN1 Silent p.F292F 0.30 TCGA-GN-A266-06 6 10956473 10956473 G A SYCP2L Missense_Mutation p.E721K 0.22 tolerated(0.13) benign(0.357) TCGA-GN-A266-06 6 109769147 109769147 G A MICAL1 Silent p.S625S 0.21 TCGA-GN-A266-06 6 109769148 109769148 G A MICAL1 Missense_Mutation p.S625F 0.20 tolerated(0.1) benign(0.002) TCGA-GN-A266-06 6 109867287 109867287 C T AK9 Missense_Mutation p.G1003D 0.12 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 6 109996915 109996915 A G AK9 Missense_Mutation p.F12L 0.14 tolerated(0.17) benign(0.235) TCGA-GN-A266-06 6 110533353 110533353 T C CDC40 Missense_Mutation p.Y249H 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 110714003 110714003 G A DDO Missense_Mutation p.T362I 0.24 tolerated(0.36) benign(0.006) TCGA-GN-A266-06 6 11104936 11104936 C T ERVFRD-1 Missense_Mutation p.R203Q 0.30 tolerated(0.4) benign(0.098) TCGA-GN-A266-06 6 111982890 111982890 G A FYN 3'UTR 0.22 TCGA-GN-A266-06 6 112025283 112025283 G A FYN Nonsense_Mutation p.R156* 0.26 TCGA-GN-A266-06 6 11306343 11306343 G A NEDD9 5'UTR 0.42 TCGA-GN-A266-06 6 116288831 116288831 C T FRK Missense_Mutation p.E228K 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 117113328 117113328 G A GPRC6A Nonsense_Mutation p.R920* 0.19 TCGA-GN-A266-06 6 117237412 117237412 C T RFX6 Missense_Mutation p.L303F 0.22 deleterious(0) possibly_damaging(0.641) TCGA-GN-A266-06 6 117662585 117662585 C T ROS1 Missense_Mutation p.G1627D 0.16 tolerated(0.16) possibly_damaging(0.842) TCGA-GN-A266-06 6 117708143 117708143 G A ROS1 Silent p.I678I 0.10 TCGA-GN-A266-06 6 117900091 117900091 G A GOPC Missense_Mutation p.A141V 0.22 tolerated(0.37) benign(0) TCGA-GN-A266-06 6 118791736 118791736 T C CEP85L Silent p.E665E 0.12 TCGA-GN-A266-06 6 119332557 119332557 C T FAM184A Missense_Mutation p.E524K 0.22 deleterious(0.02) benign(0.011) TCGA-GN-A266-06 6 12163537 12163537 C T HIVEP1 Missense_Mutation p.P2334S 0.25 tolerated(0.21) benign(0.013) TCGA-GN-A266-06 6 121768626 121768626 C T GJA1 Silent p.I211I 0.37 TCGA-GN-A266-06 6 12294190 12294190 G A EDN1 Missense_Mutation p.G84R 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 127898343 127898343 C T C6orf58 Missense_Mutation p.P5S 0.12 tolerated(0.36) benign(0.178) TCGA-GN-A266-06 6 128294298 128294298 C T PTPRK Missense_Mutation p.G1386S 0.38 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 6 128403761 128403761 G A PTPRK Missense_Mutation p.S533L 0.33 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 6 129663546 129663546 G A LAMA2 Missense_Mutation p.G1457E 0.34 deleterious(0) probably_damaging(0.988) TCGA-GN-A266-06 6 129722412 129722412 A G LAMA2 Missense_Mutation p.N1830S 0.30 tolerated(0.66) benign(0.021) TCGA-GN-A266-06 6 131247777 131247777 C T EPB41L2 Missense_Mutation p.G260R 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 131466437 131466437 C T AKAP7 Missense_Mutation p.S11F 0.41 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-GN-A266-06 6 131973691 131973691 G A ENPP3 Nonsense_Mutation p.W96* 0.26 TCGA-GN-A266-06 6 132030855 132030855 T A CTAGE9 Nonsense_Mutation p.K435* 0.17 TCGA-GN-A266-06 6 132045225 132045225 G A ENPP3 Missense_Mutation p.E598K 0.23 tolerated(0.33) benign(0.003) TCGA-GN-A266-06 6 132270418 132270418 C T CTGF Missense_Mutation p.G346R 0.32 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 6 132891909 132891909 G A TAAR6 Missense_Mutation p.G150E 0.11 tolerated(0.27) probably_damaging(0.939) TCGA-GN-A266-06 6 132910879 132910879 G A TAAR5 5'Flank 0.43 TCGA-GN-A266-06 6 133078615 133078615 G A VNN2 Missense_Mutation p.P95L 0.39 deleterious(0) probably_damaging(0.956) TCGA-GN-A266-06 6 133078616 133078616 G A VNN2 Missense_Mutation p.P95S 0.41 deleterious(0.01) probably_damaging(0.956) TCGA-GN-A266-06 6 133789771 133789771 G A EYA4 Missense_Mutation p.G291E 0.20 tolerated(0.23) probably_damaging(0.996) TCGA-GN-A266-06 6 133802624 133802624 C T EYA4 Missense_Mutation p.P332S 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-GN-A266-06 6 134210590 134210590 G A TCF21 Missense_Mutation p.E19K 0.36 tolerated(0.68) benign(0.001) TCGA-GN-A266-06 6 134350794 134350794 C T SLC2A12 Missense_Mutation p.E57K 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 136495007 136495007 C T PDE7B Missense_Mutation p.H262Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 6 136742909 136742909 C T MAP7 Silent p.K54K 0.10 TCGA-GN-A266-06 6 136980443 136980443 A T MAP3K5 Missense_Mutation p.F480L 0.34 tolerated(0.45) possibly_damaging(0.556) TCGA-GN-A266-06 6 137243769 137243769 C A SLC35D3 Missense_Mutation p.P68H 0.40 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 137322987 137322987 A G IL20RA Missense_Mutation p.L457S 0.23 deleterious(0.01) probably_damaging(0.927) TCGA-GN-A266-06 6 13801537 13801537 G A MCUR1 Missense_Mutation p.L242F 0.27 deleterious(0.04) possibly_damaging(0.861) TCGA-GN-A266-06 6 138584494 138584494 C T KIAA1244 Missense_Mutation p.S625F 0.31 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 6 138601144 138601144 C T KIAA1244 Silent p.F768F 0.27 TCGA-GN-A266-06 6 138640839 138640839 G A KIAA1244 Splice_Site p.X1492_splice 0.23 TCGA-GN-A266-06 6 138657605 138657605 C T KIAA1244 Silent p.V2172V 0.32 TCGA-GN-A266-06 6 139167690 139167690 G A ECT2L Missense_Mutation p.G260E 0.34 deleterious(0.03) possibly_damaging(0.801) TCGA-GN-A266-06 6 139170409 139170409 G A ECT2L Missense_Mutation p.V303M 0.45 deleterious(0) possibly_damaging(0.837) TCGA-GN-A266-06 6 143074907 143074907 G A HIVEP2 Silent p.I2226I 0.27 TCGA-GN-A266-06 6 144093564 144093564 G A PHACTR2 Missense_Mutation p.E468K 0.35 deleterious(0) benign(0.439) TCGA-GN-A266-06 6 145069578 145069578 C T UTRN Silent p.S2712S 0.28 TCGA-GN-A266-06 6 145948663 145948663 G A EPM2A Silent p.F295F 0.08 TCGA-GN-A266-06 6 146127418 146127418 G A FBXO30 Missense_Mutation p.H42Y 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 146351223 146351223 C T GRM1 Silent p.I190I 0.33 TCGA-GN-A266-06 6 146755520 146755520 C T GRM1 Missense_Mutation p.P1058L 0.25 tolerated_low_confidence(0.06) benign(0) TCGA-GN-A266-06 6 147123912 147123912 C T ADGB Intron 0.32 TCGA-GN-A266-06 6 147124100 147124100 C T ADGB Intron 0.41 TCGA-GN-A266-06 6 149773795 149773795 C T ZC3H12D Silent p.R248R 0.41 TCGA-GN-A266-06 6 150147327 150147327 A C LRP11 Intron 0.18 TCGA-GN-A266-06 6 150322216 150322216 C T RAET1K RNA 0.31 TCGA-GN-A266-06 6 151140886 151140886 C T PLEKHG1 Missense_Mutation p.P462S 0.38 tolerated(0.08) benign(0.009) TCGA-GN-A266-06 6 151152940 151152940 C T PLEKHG1 Missense_Mutation p.A898V 0.48 tolerated(0.13) benign(0.004) TCGA-GN-A266-06 6 151865706 151865706 G A CCDC170 Splice_Site p.X148_splice 0.18 TCGA-GN-A266-06 6 151914339 151914339 G A CCDC170 Missense_Mutation p.R464Q 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-GN-A266-06 6 152738117 152738117 C T SYNE1 Missense_Mutation p.E1819K 0.19 benign(0.154) TCGA-GN-A266-06 6 152774627 152774627 G A SYNE1 Intron 0.38 TCGA-GN-A266-06 6 152779912 152779912 G A SYNE1 Missense_Mutation p.L850F 0.34 benign(0.241) TCGA-GN-A266-06 6 152804247 152804247 C T SYNE1 Silent p.T441T 0.26 TCGA-GN-A266-06 6 152823854 152823854 C T SYNE1 Missense_Mutation p.E268K 0.40 probably_damaging(0.964) TCGA-GN-A266-06 6 152831412 152831412 G A SYNE1 Missense_Mutation p.P166L 0.27 possibly_damaging(0.512) TCGA-GN-A266-06 6 152847286 152847286 C T SYNE1 Missense_Mutation p.D52N 0.40 possibly_damaging(0.771) TCGA-GN-A266-06 6 153043382 153043382 T C MYCT1 Silent p.D234D 0.08 TCGA-GN-A266-06 6 153076443 153076443 C T VIP Silent p.F90F 0.36 TCGA-GN-A266-06 6 155451112 155451112 C T TIAM2 Missense_Mutation p.S252F 0.26 deleterious(0) benign(0.366) TCGA-GN-A266-06 6 155451113 155451113 C T TIAM2 Silent p.S252S 0.26 TCGA-GN-A266-06 6 157521850 157521850 C T ARID1B Silent p.R1374R 0.30 TCGA-GN-A266-06 6 158296089 158296089 C T SNX9 Missense_Mutation p.P61S 0.13 tolerated(0.8) benign(0.001) TCGA-GN-A266-06 6 158514020 158514020 G A SYNJ2 Missense_Mutation p.E1210K 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.67) TCGA-GN-A266-06 6 159206478 159206478 G A EZR Silent p.I110I 0.26 TCGA-GN-A266-06 6 159644651 159644651 A T FNDC1 Missense_Mutation p.E286D 0.26 deleterious(0.04) unknown(0) TCGA-GN-A266-06 6 159653975 159653975 C T FNDC1 Missense_Mutation p.R811W 0.29 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 6 159677661 159677661 G A FNDC1 Silent p.T1724T 0.24 TCGA-GN-A266-06 6 160206653 160206653 G A TCP1 Intron 0.23 TCGA-GN-A266-06 6 160328631 160328631 G A MAS1 Missense_Mutation p.R215Q 0.28 tolerated(0.29) benign(0.025) TCGA-GN-A266-06 6 160328632 160328632 G A MAS1 Silent p.R215R 0.29 TCGA-GN-A266-06 6 160679405 160679405 C T SLC22A2 Missense_Mutation p.E129K 0.10 tolerated(0.06) benign(0.108) TCGA-GN-A266-06 6 160829918 160829918 C T SLC22A3 Silent p.I274I 0.28 TCGA-GN-A266-06 6 161007585 161007585 C T LPA Missense_Mutation p.R1342K 0.29 tolerated(0.26) possibly_damaging(0.849) TCGA-GN-A266-06 6 161143527 161143527 G A PLG Missense_Mutation p.G395E 0.36 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 6 161152165 161152165 G A PLG Missense_Mutation p.E447K 0.36 deleterious(0) possibly_damaging(0.904) TCGA-GN-A266-06 6 161173212 161173212 C T PLG Missense_Mutation p.R731C 0.40 deleterious(0) probably_damaging(0.98) TCGA-GN-A266-06 6 161529837 161529837 C T MAP3K4 Silent p.F1394F 0.25 TCGA-GN-A266-06 6 167570663 167570663 C T GPR31 Silent p.R219R 0.13 TCGA-GN-A266-06 6 167705012 167705012 C T UNC93A Missense_Mutation p.S12F 0.33 deleterious(0) probably_damaging(0.984) TCGA-GN-A266-06 6 167754924 167754924 G A TTLL2 Silent p.R512R 0.19 TCGA-GN-A266-06 6 168458013 168458013 C T FRMD1 Missense_Mutation p.E472K 0.14 tolerated(0.87) benign(0.127) TCGA-GN-A266-06 6 169053845 169053845 G A SMOC2 Missense_Mutation p.E419K 0.44 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 169623568 169623568 C T THBS2 Missense_Mutation p.D926N 0.23 tolerated(0.26) probably_damaging(1) TCGA-GN-A266-06 6 170156440 170156440 C T ERMARD Missense_Mutation p.P108S 0.35 tolerated(0.44) benign(0.367) TCGA-GN-A266-06 6 170700139 170700139 C T FAM120B Silent p.V843V 0.20 TCGA-GN-A266-06 6 17426833 17426833 C T CAP2 Missense_Mutation p.S45F 0.16 tolerated(0.67) benign(0.021) TCGA-GN-A266-06 6 18171642 18171642 G A KDM1B Missense_Mutation p.E156K 0.30 tolerated(0.2) probably_damaging(0.995) TCGA-GN-A266-06 6 18465261 18465261 G A RNF144B Missense_Mutation p.R292Q 0.52 tolerated(0.14) benign(0.023) TCGA-GN-A266-06 6 18465262 18465262 G A RNF144B Silent p.R292R 0.48 TCGA-GN-A266-06 6 24596513 24596513 C T KIAA0319 Nonsense_Mutation p.W130* 0.29 TCGA-GN-A266-06 6 24596614 24596614 G A KIAA0319 Silent p.I96I 0.14 TCGA-GN-A266-06 6 24596740 24596740 G A KIAA0319 Silent p.V54V 0.31 TCGA-GN-A266-06 6 24601376 24601376 G A KIAA0319 5'UTR 0.13 TCGA-GN-A266-06 6 24601398 24601398 C T KIAA0319 5'UTR 0.35 TCGA-GN-A266-06 6 25701508 25701508 G A SCGN Missense_Mutation p.G259E 0.34 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 6 25769408 25769408 T A SLC17A4 Missense_Mutation p.F96Y 0.47 tolerated(0.14) benign(0.366) TCGA-GN-A266-06 6 25779457 25779457 C T SLC17A4 3'UTR 0.22 TCGA-GN-A266-06 6 25799016 25799016 G A SLC17A1 Silent p.L467L 0.30 TCGA-GN-A266-06 6 25813407 25813407 G A SLC17A1 Silent p.F217F 0.27 TCGA-GN-A266-06 6 25851002 25851002 G A SLC17A3 Silent p.S272S 0.29 TCGA-GN-A266-06 6 26392647 26392647 C T BTN2A2 Silent p.L342L 0.30 TCGA-GN-A266-06 6 26408109 26408109 G A BTN3A1 Missense_Mutation p.G215E 0.26 tolerated(0.14) possibly_damaging(0.633) TCGA-GN-A266-06 6 2683362 2683362 C T MYLK4 Missense_Mutation p.D194N 0.35 deleterious(0.02) benign(0.433) TCGA-GN-A266-06 6 27114472 27114472 C T HIST1H2BK Missense_Mutation p.E36K 0.12 deleterious_low_confidence(0.01) benign(0.183) TCGA-GN-A266-06 6 27806852 27806852 C G HIST1H2BN 3'UTR 0.19 TCGA-GN-A266-06 6 27806862 27806862 C T HIST1H2BN 3'UTR 0.23 TCGA-GN-A266-06 6 27879581 27879581 C T OR2B2 Missense_Mutation p.E173K 0.42 tolerated(0.87) benign(0.012) TCGA-GN-A266-06 6 28264676 28264676 C T PGBD1 Silent p.L242L 0.31 TCGA-GN-A266-06 6 28501788 28501788 C T GPX5 Silent p.S170S 0.27 TCGA-GN-A266-06 6 28547088 28547088 C T SCAND3 Missense_Mutation p.E177K 0.29 deleterious_low_confidence(0) benign(0.007) TCGA-GN-A266-06 6 2890586 2890586 G A SERPINB9 Silent p.F314F 0.11 TCGA-GN-A266-06 6 29012269 29012269 C T OR2W1 Silent p.T228T 0.40 TCGA-GN-A266-06 6 29054925 29054925 G A OR2B3 Missense_Mutation p.S34L 0.31 tolerated(0.7) benign(0.049) TCGA-GN-A266-06 6 29079901 29079901 C T OR2J3 Silent p.T78T 0.32 TCGA-GN-A266-06 6 29142195 29142195 C T OR2J2 Silent p.L261L 0.30 TCGA-GN-A266-06 6 29275110 29275110 C T OR14J1 Missense_Mutation p.S215F 0.07 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 29323781 29323781 C T OR5V1 Silent p.G64G 0.34 TCGA-GN-A266-06 6 29408389 29408389 C T OR10C1 Silent p.I199I 0.30 TCGA-GN-A266-06 6 29408591 29408591 C T OR10C1 Missense_Mutation p.P267S 0.37 tolerated(0.21) benign(0.031) TCGA-GN-A266-06 6 29408592 29408592 C T OR10C1 Missense_Mutation p.P267L 0.37 tolerated(0.19) benign(0.012) TCGA-GN-A266-06 6 2948624 2948624 G A SERPINB6 Missense_Mutation p.P347S 0.14 deleterious(0.05) benign(0.12) TCGA-GN-A266-06 6 29556431 29556431 G A OR2H2 Missense_Mutation p.G237E 0.18 deleterious(0.03) probably_damaging(0.921) TCGA-GN-A266-06 6 29571449 29571449 C T GABBR1 Silent p.R919R 0.36 TCGA-GN-A266-06 6 29638548 29638548 G A MOG Intron 0.40 TCGA-GN-A266-06 6 29638549 29638549 G A MOG Intron 0.40 TCGA-GN-A266-06 6 29640868 29640868 C T ZFP57 Missense_Mutation p.M340I 0.33 tolerated(0.19) benign(0.02) TCGA-GN-A266-06 6 30032482 30032482 C T ZNRD1 3'UTR 0.33 TCGA-GN-A266-06 6 30632922 30632922 G A DHX16 Missense_Mutation p.P351S 0.16 tolerated(0.15) unknown(0) TCGA-GN-A266-06 6 30657977 30657977 G A NRM Silent p.I59I 0.38 TCGA-GN-A266-06 6 31084274 31084274 C T CDSN Missense_Mutation p.G373E 0.29 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 6 31513909 31513909 C T ATP6V1G2 Missense_Mutation p.E54K 0.32 tolerated(0.05) benign(0.406) TCGA-GN-A266-06 6 31592070 31592070 C T PRRC2A Missense_Mutation p.S108L 0.10 unknown(0) TCGA-GN-A266-06 6 31675540 31675540 G A LY6G6F Missense_Mutation p.V120M 0.34 tolerated(0.11) benign(0.248) TCGA-GN-A266-06 6 31692639 31692639 G A C6orf25 Intron 0.31 TCGA-GN-A266-06 6 31692645 31692645 G A C6orf25 Intron 0.30 TCGA-GN-A266-06 6 31734953 31734953 G A VWA7 Silent p.L622L 0.29 TCGA-GN-A266-06 6 31831390 31831390 C T SLC44A4 3'UTR 0.29 TCGA-GN-A266-06 6 31864784 31864784 G A EHMT2 Intron 0.31 TCGA-GN-A266-06 6 31901545 31901545 G A CFB Missense_Mutation p.E139K 0.32 deleterious(0.04) benign(0.02) TCGA-GN-A266-06 6 31902050 31902050 G A C2 Missense_Mutation p.E275K 0.32 tolerated(0.77) benign(0.008) TCGA-GN-A266-06 6 31915126 31915126 G T CFB Silent p.A664A 0.26 TCGA-GN-A266-06 6 31940123 31940123 G A STK19 Missense_Mutation p.D89N 0.28 tolerated_low_confidence(0.07) benign(0.108) TCGA-GN-A266-06 6 32007948 32007948 C T CYP21A2 Missense_Mutation p.S302F 0.33 deleterious(0) probably_damaging(0.944) TCGA-GN-A266-06 6 32010358 32010358 C T TNXB Silent p.R457R 0.20 TCGA-GN-A266-06 6 32017111 32017111 C T TNXB 5'Flank 0.27 TCGA-GN-A266-06 6 32020716 32020716 G A TNXB Missense_Mutation p.P2947L 0.33 probably_damaging(0.958) TCGA-GN-A266-06 6 32038093 32038093 G A TNXB Missense_Mutation p.P1697S 0.37 probably_damaging(0.997) TCGA-GN-A266-06 6 32119621 32119621 G A PRRT1 5'UTR 0.33 TCGA-GN-A266-06 6 32165227 32165227 C T NOTCH4 Missense_Mutation p.G1634E 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 6 32261670 32261670 C T C6orf10 Silent p.T260T 0.30 TCGA-GN-A266-06 6 32372984 32372984 G A BTNL2 Silent p.L53L 0.34 TCGA-GN-A266-06 6 32487303 32487303 C T HLA-DRB5 Missense_Mutation p.E166K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 6 32549490 32549490 C T HLA-DRB1 Missense_Mutation p.E166K 0.21 deleterious(0.01) benign(0.265) TCGA-GN-A266-06 6 32815321 32815321 G A TAP1 Silent p.F684F 0.11 TCGA-GN-A266-06 6 33052869 33052869 C T HLA-DPB1 Silent p.V169V 0.35 TCGA-GN-A266-06 6 33132116 33132116 G A COL11A2 Silent p.L1580L 0.39 TCGA-GN-A266-06 6 33172425 33172425 C T HSD17B8 5'UTR 0.44 TCGA-GN-A266-06 6 33703100 33703100 C T IP6K3 Missense_Mutation p.E52K 0.26 tolerated(0.24) benign(0.419) TCGA-GN-A266-06 6 34004268 34004268 C T GRM4 Nonsense_Mutation p.W540* 0.21 TCGA-GN-A266-06 6 34101293 34101293 C T GRM4 5'UTR 0.19 TCGA-GN-A266-06 6 34101294 34101294 C T GRM4 5'UTR 0.17 TCGA-GN-A266-06 6 34496573 34496573 C T PACSIN1 Silent p.I125I 0.29 TCGA-GN-A266-06 6 34499443 34499443 C T PACSIN1 Silent p.P368P 0.11 TCGA-GN-A266-06 6 35277517 35277517 G A DEF6 Missense_Mutation p.R56Q 0.29 tolerated(0.27) benign(0.099) TCGA-GN-A266-06 6 35280081 35280081 G A DEF6 Silent p.V142V 0.34 TCGA-GN-A266-06 6 36106768 36106768 G A MAPK13 Silent p.T318T 0.18 TCGA-GN-A266-06 6 36742771 36742771 G A CPNE5 Missense_Mutation p.P235L 0.20 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 6 37336500 37336500 T A RNF8 Missense_Mutation p.L161I 0.37 tolerated(0.33) benign(0.014) TCGA-GN-A266-06 6 38690664 38690664 C T DNAH8 5'Flank 0.33 TCGA-GN-A266-06 6 38750810 38750810 G A DNAH8 Missense_Mutation p.G547S 0.22 possibly_damaging(0.876) TCGA-GN-A266-06 6 38875751 38875751 G A DNAH8 Missense_Mutation p.R2906Q 0.41 probably_damaging(0.979) TCGA-GN-A266-06 6 38890955 38890955 T A DNAH8 Missense_Mutation p.I3378N 0.27 probably_damaging(0.926) TCGA-GN-A266-06 6 38905821 38905821 G A DNAH8 Missense_Mutation p.E3662K 0.35 benign(0.018) TCGA-GN-A266-06 6 40359880 40359880 G A LRFN2 Silent p.F724F 0.30 TCGA-GN-A266-06 6 40400164 40400164 G A LRFN2 Missense_Mutation p.P230L 0.34 tolerated(0.18) benign(0.062) TCGA-GN-A266-06 6 41197835 41197835 C T TREML4 Missense_Mutation p.P161S 0.33 tolerated(0.27) benign(0.009) TCGA-GN-A266-06 6 41303840 41303840 C T NCR2 Missense_Mutation p.S23F 0.35 tolerated(0.16) possibly_damaging(0.884) TCGA-GN-A266-06 6 41318520 41318520 C T NCR2 Missense_Mutation p.S250F 0.33 tolerated_low_confidence(0.54) possibly_damaging(0.831) TCGA-GN-A266-06 6 41752781 41752781 C T PRICKLE4 Missense_Mutation p.P117S 0.12 deleterious(0.05) benign(0.249) TCGA-GN-A266-06 6 42147103 42147103 G A GUCA1A Missense_Mutation p.E190K 0.36 tolerated(0.51) unknown(0) TCGA-GN-A266-06 6 42237375 42237375 G C TRERF1 5'UTR 0.27 TCGA-GN-A266-06 6 42643911 42643911 T C UBR2 Silent p.L1457L 0.11 TCGA-GN-A266-06 6 42985014 42985014 C T KLHDC3 Silent p.S28S 0.32 TCGA-GN-A266-06 6 43172719 43172719 C T CUL9 Missense_Mutation p.R1500C 0.34 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 6 43173766 43173766 C T CUL9 Silent p.L1605L 0.32 TCGA-GN-A266-06 6 43251423 43251423 G A TTBK1 Missense_Mutation p.G982D 0.30 probably_damaging(0.999) TCGA-GN-A266-06 6 43251647 43251647 C T TTBK1 Missense_Mutation p.P1057S 0.38 probably_damaging(0.996) TCGA-GN-A266-06 6 43271893 43271893 C T SLC22A7 Silent p.I501I 0.29 TCGA-GN-A266-06 6 43273469 43273469 G A CRIP3 3'UTR 0.43 TCGA-GN-A266-06 6 43273742 43273742 C T CRIP3 Intron 0.39 TCGA-GN-A266-06 6 43475013 43475013 C T LRRC73 Missense_Mutation p.G305E 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.573) TCGA-GN-A266-06 6 46108891 46108891 G A ENPP4 Missense_Mutation p.R310Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 46111020 46111020 C T ENPP4 Silent p.D335D 0.26 TCGA-GN-A266-06 6 46657718 46657718 C T TDRD6 Missense_Mutation p.S618F 0.19 deleterious(0.01) benign(0.031) TCGA-GN-A266-06 6 46660326 46660326 T A TDRD6 Silent p.L1487L 0.35 TCGA-GN-A266-06 6 46672296 46672296 C T PLA2G7 3'UTR 0.16 TCGA-GN-A266-06 6 46672297 46672297 C T PLA2G7 Silent p.%3D 0.19 TCGA-GN-A266-06 6 46821784 46821784 T C GPR116 Missense_Mutation p.E1329G 0.34 deleterious(0) unknown(0) TCGA-GN-A266-06 6 47646785 47646785 G A GPR111 Missense_Mutation p.G129E 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 49806236 49806236 C T CRISP1 Missense_Mutation p.G179E 0.19 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 6 49936573 49936573 C T DEFB113 Silent p.Q22Q 0.19 TCGA-GN-A266-06 6 51935805 51935805 G A PKHD1 Silent p.I222I 0.12 TCGA-GN-A266-06 6 52141185 52141185 G A MCM3 Missense_Mutation p.R464C 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 52617747 52617747 G A GSTA2 Missense_Mutation p.L107F 0.34 tolerated(0.06) benign(0.038) TCGA-GN-A266-06 6 52619770 52619770 G A GSTA2 Silent p.L81L 0.12 TCGA-GN-A266-06 6 52699038 52699038 C T GSTA5 Missense_Mutation p.M105I 0.35 tolerated(0.09) benign(0.012) TCGA-GN-A266-06 6 53989330 53989330 G A MLIP Silent p.A93A 0.38 TCGA-GN-A266-06 6 54805315 54805315 T C FAM83B Silent p.L516L 0.14 TCGA-GN-A266-06 6 54806620 54806620 A G FAM83B Missense_Mutation p.S951G 0.20 tolerated(0.37) benign(0.001) TCGA-GN-A266-06 6 55039302 55039302 C A HCRTR2 5'UTR 0.53 TCGA-GN-A266-06 6 55039303 55039303 C A HCRTR2 5'UTR 0.53 TCGA-GN-A266-06 6 55360232 55360232 G A HMGCLL1 Silent p.I290I 0.22 TCGA-GN-A266-06 6 55378900 55378900 C T HMGCLL1 Missense_Mutation p.G193E 0.21 tolerated(1) benign(0.001) TCGA-GN-A266-06 6 55381350 55381350 G A HMGCLL1 Missense_Mutation p.R147C 0.24 tolerated(0.06) benign(0.022) TCGA-GN-A266-06 6 55929417 55929417 G A COL21A1 Nonsense_Mutation p.Q711* 0.29 TCGA-GN-A266-06 6 56035641 56035641 G A COL21A1 Missense_Mutation p.P278S 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 56044403 56044403 C T COL21A1 Missense_Mutation p.E205K 0.20 deleterious(0.02) probably_damaging(0.93) TCGA-GN-A266-06 6 56044907 56044907 C T COL21A1 Missense_Mutation p.D37N 0.34 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 56879998 56879998 G A BEND6 Silent p.G122G 0.33 TCGA-GN-A266-06 6 6196109 6196109 C T F13A1 Missense_Mutation p.R409Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 6 62887172 62887172 T A KHDRBS2 Missense_Mutation p.E46V 0.38 tolerated(0.09) benign(0) TCGA-GN-A266-06 6 63989814 63989814 C T LGSN 3'UTR 0.29 TCGA-GN-A266-06 6 63990547 63990547 G A LGSN Silent p.F303F 0.27 TCGA-GN-A266-06 6 63995607 63995607 C T LGSN Missense_Mutation p.R72K 0.32 tolerated(0.58) benign(0.002) TCGA-GN-A266-06 6 64422871 64422871 C T PHF3 Missense_Mutation p.S1796L 0.38 deleterious(0.01) benign(0.015) TCGA-GN-A266-06 6 70048811 70048811 G A BAI3 Silent p.Q1064Q 0.30 TCGA-GN-A266-06 6 70064192 70064192 C T BAI3 Missense_Mutation p.S1176L 0.21 deleterious(0) benign(0.041) TCGA-GN-A266-06 6 70065752 70065752 G A BAI3 Missense_Mutation p.V1199I 0.30 deleterious(0.02) benign(0.037) TCGA-GN-A266-06 6 70840075 70840075 G A COL19A1 Missense_Mutation p.G448E 0.32 tolerated(0.92) benign(0.067) TCGA-GN-A266-06 6 70866042 70866042 C T COL19A1 Silent p.A701A 0.16 TCGA-GN-A266-06 6 70944264 70944264 C T COL9A1 Silent p.Q764Q 0.29 TCGA-GN-A266-06 6 71004099 71004099 G A COL9A1 Missense_Mutation p.S156L 0.41 unknown(0) TCGA-GN-A266-06 6 71012631 71012631 C T COL9A1 5'UTR 0.21 TCGA-GN-A266-06 6 72011334 72011334 G A OGFRL1 Missense_Mutation p.G313E 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 72967929 72967929 C T RIMS1 Missense_Mutation p.R958C 0.28 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 6 73102446 73102446 G A RIMS1 Missense_Mutation p.D1518N 0.40 deleterious(0) possibly_damaging(0.6) TCGA-GN-A266-06 6 7355324 7355324 G A CAGE1 Silent p.I773I 0.25 TCGA-GN-A266-06 6 73787056 73787056 C T KCNQ5 Missense_Mutation p.L210F 0.33 tolerated(0.16) benign(0.147) TCGA-GN-A266-06 6 73933467 73933467 G A KHDC1L 3'UTR 0.56 TCGA-GN-A266-06 6 73951256 73951256 G A KHDC1 Missense_Mutation p.P237L 0.34 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-GN-A266-06 6 7401210 7401210 G C RIOK1 Missense_Mutation p.R167T 0.19 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 6 74104564 74104564 G A DDX43 5'UTR 0.34 TCGA-GN-A266-06 6 74117797 74117797 C T DDX43 Silent p.F384F 0.43 TCGA-GN-A266-06 6 74135297 74135297 C T MB21D1 Missense_Mutation p.D408N 0.50 tolerated(0.16) benign(0.196) TCGA-GN-A266-06 6 7579759 7579759 C T DSP Silent p.T1112T 0.23 TCGA-GN-A266-06 6 75828869 75828869 A G COL12A1 Missense_Mutation p.L2415S 0.38 probably_damaging(0.967) TCGA-GN-A266-06 6 75857400 75857400 C T COL12A1 Missense_Mutation p.E1470K 0.12 probably_damaging(0.989) TCGA-GN-A266-06 6 75899049 75899049 C T COL12A1 Missense_Mutation p.G236E 0.22 probably_damaging(1) TCGA-GN-A266-06 6 76022532 76022532 G A FILIP1 Missense_Mutation p.P1006S 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 6 76024179 76024179 C T FILIP1 Missense_Mutation p.E457K 0.28 deleterious(0) possibly_damaging(0.736) TCGA-GN-A266-06 6 76576731 76576731 G A MYO6 Missense_Mutation p.R618Q 0.15 tolerated(0.45) unknown(0) TCGA-GN-A266-06 6 76751661 76751661 C T IMPG1 Missense_Mutation p.E84K 0.26 deleterious(0) possibly_damaging(0.804) TCGA-GN-A266-06 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.25 TCGA-GN-A266-06 6 76751789 76751789 C T IMPG1 Missense_Mutation p.R41K 0.32 tolerated(0.5) benign(0.037) TCGA-GN-A266-06 6 7880319 7880319 G A BMP6 Silent p.A459A 0.19 TCGA-GN-A266-06 6 80197078 80197078 G A LCA5 Silent p.F579F 0.25 TCGA-GN-A266-06 6 8097578 8097578 G A EEF1E1 Silent p.I70I 0.25 TCGA-GN-A266-06 6 82950290 82950290 G A IBTK 5'UTR 0.33 TCGA-GN-A266-06 6 83828678 83828678 G A DOPEY1 Silent p.L284L 0.40 TCGA-GN-A266-06 6 83869520 83869520 C T DOPEY1 Missense_Mutation p.S2268L 0.27 deleterious(0.02) possibly_damaging(0.616) TCGA-GN-A266-06 6 83933564 83933564 G A ME1 Missense_Mutation p.S455F 0.25 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 6 84233867 84233867 C T PRSS35 Missense_Mutation p.S236F 0.22 tolerated(0.08) benign(0.01) TCGA-GN-A266-06 6 84311040 84311040 G A SNAP91 Missense_Mutation p.S425F 0.52 tolerated(0.15) unknown(0) TCGA-GN-A266-06 6 84765107 84765107 G A MRAP2 Missense_Mutation p.E24K 0.30 tolerated(0.19) probably_damaging(0.994) TCGA-GN-A266-06 6 84799011 84799011 A G MRAP2 Silent p.Q143Q 0.24 TCGA-GN-A266-06 6 84799172 84799172 C T MRAP2 Missense_Mutation p.S197F 0.29 tolerated(0.76) benign(0.001) TCGA-GN-A266-06 6 85446431 85446431 G A TBX18 Missense_Mutation p.S599L 0.35 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-GN-A266-06 6 85446756 85446756 C T TBX18 Missense_Mutation p.G491R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 6 85446758 85446758 G A TBX18 Missense_Mutation p.S490L 0.28 tolerated(0.34) probably_damaging(0.968) TCGA-GN-A266-06 6 85466564 85466564 C T TBX18 Nonsense_Mutation p.W208* 0.38 TCGA-GN-A266-06 6 87964474 87964474 C T ZNF292 Missense_Mutation p.S376L 0.29 deleterious(0) probably_damaging(0.978) TCGA-GN-A266-06 6 88144730 88144730 G A C6ORF165 Missense_Mutation p.E485K 0.31 tolerated(0.11) benign(0.158) TCGA-GN-A266-06 6 90604965 90604965 C T GJA10 Missense_Mutation p.H260Y 0.28 tolerated(0.07) benign(0.418) TCGA-GN-A266-06 6 93953127 93953127 A T EPHA7 3'UTR 0.36 TCGA-GN-A266-06 6 93965749 93965749 C T EPHA7 Missense_Mutation p.D727N 0.41 deleterious(0) possibly_damaging(0.844) TCGA-GN-A266-06 6 93967835 93967835 C T EPHA7 Missense_Mutation p.E698K 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 6 93979305 93979305 C T EPHA7 Missense_Mutation p.G508E 0.33 tolerated(0.05) possibly_damaging(0.873) TCGA-GN-A266-06 6 96034425 96034425 G A MANEA Missense_Mutation p.G37E 0.39 tolerated(0.38) probably_damaging(1) TCGA-GN-A266-06 6 97246286 97246286 G A GPR63 3'UTR 0.19 TCGA-GN-A266-06 6 97246843 97246843 G A GPR63 Silent p.F255F 0.42 TCGA-GN-A266-06 6 97562253 97562253 G A KLHL32 Missense_Mutation p.E408K 0.09 tolerated(0.72) probably_damaging(0.998) TCGA-GN-A266-06 6 97562297 97562297 G A KLHL32 Silent p.K422K 0.18 TCGA-GN-A266-06 7 100172796 100172796 G A LRCH4 Silent p.F662F 0.18 TCGA-GN-A266-06 7 100238703 100238703 G A TFR2 Missense_Mutation p.P61L 0.40 tolerated(0.12) benign(0.046) TCGA-GN-A266-06 7 100240948 100240948 C T ACTL6B Missense_Mutation p.G401D 0.36 deleterious(0) probably_damaging(0.973) TCGA-GN-A266-06 7 100285673 100285673 G A GIGYF1 Silent p.P32P 0.12 TCGA-GN-A266-06 7 100320615 100320615 C T EPO Silent p.S147S 0.22 TCGA-GN-A266-06 7 100348838 100348838 G A ZAN Missense_Mutation p.A519T 0.38 probably_damaging(0.997) TCGA-GN-A266-06 7 100349948 100349948 C T ZAN Silent p.T740T 0.18 TCGA-GN-A266-06 7 100371412 100371412 C T ZAN Silent p.I1901I 0.45 TCGA-GN-A266-06 7 100382394 100382394 G A ZAN Missense_Mutation p.E2257K 0.26 unknown(0) TCGA-GN-A266-06 7 100391855 100391855 G A ZAN Intron 0.21 TCGA-GN-A266-06 7 100479839 100479839 C T SRRT Silent p.F188F 0.26 TCGA-GN-A266-06 7 100610353 100610353 C T MUC3A 3'UTR 0.15 TCGA-GN-A266-06 7 100678106 100678106 G A MUC17 Missense_Mutation p.E1137K 0.27 unknown(0) TCGA-GN-A266-06 7 100682112 100682112 A G MUC17 Missense_Mutation p.E2472G 0.26 probably_damaging(0.979) TCGA-GN-A266-06 7 100683171 100683171 C A MUC17 Missense_Mutation p.S2825Y 0.35 unknown(0) TCGA-GN-A266-06 7 100683951 100683951 C T MUC17 Missense_Mutation p.S3085L 0.26 probably_damaging(0.942) TCGA-GN-A266-06 7 100684188 100684188 C T MUC17 Missense_Mutation p.T3164I 0.26 possibly_damaging(0.86) TCGA-GN-A266-06 7 100685723 100685723 C T MUC17 Missense_Mutation p.P3676S 0.32 benign(0) TCGA-GN-A266-06 7 100686280 100686280 C T MUC17 Silent p.V3861V 0.15 TCGA-GN-A266-06 7 100686975 100686975 C A MUC17 Missense_Mutation p.T4093N 0.37 unknown(0) TCGA-GN-A266-06 7 100686978 100686978 C T MUC17 Missense_Mutation p.T4094I 0.35 unknown(0) TCGA-GN-A266-06 7 100686979 100686979 C T MUC17 Silent p.T4094T 0.35 TCGA-GN-A266-06 7 100699524 100699524 C T MUC17 Silent p.S4471S 0.41 TCGA-GN-A266-06 7 100730624 100730624 C T TRIM56 Silent p.L11L 0.36 TCGA-GN-A266-06 7 100880830 100880830 G A CLDN15 Silent p.F11F 0.20 TCGA-GN-A266-06 7 102087224 102087224 G A ORAI2 Missense_Mutation p.E164K 0.17 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 7 103018973 103018973 C T SLC26A5 Missense_Mutation p.G569R 0.28 tolerated(0.1) possibly_damaging(0.806) TCGA-GN-A266-06 7 103050852 103050852 C T SLC26A5 Missense_Mutation p.G239R 0.26 deleterious(0.01) possibly_damaging(0.806) TCGA-GN-A266-06 7 103061245 103061245 C T SLC26A5 Missense_Mutation p.E78K 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-GN-A266-06 7 103290744 103290744 C T RELN Missense_Mutation p.G660E 0.31 tolerated(0.26) probably_damaging(1) TCGA-GN-A266-06 7 107303820 107303820 G A SLC26A4 Missense_Mutation p.E82K 0.19 tolerated(0.08) possibly_damaging(0.626) TCGA-GN-A266-06 7 107430122 107430122 C T SLC26A3 Silent p.G194G 0.24 TCGA-GN-A266-06 7 107431616 107431616 G A SLC26A3 Silent p.V149V 0.38 TCGA-GN-A266-06 7 107600245 107600245 G A LAMB1 Silent p.S783S 0.17 TCGA-GN-A266-06 7 107616285 107616285 A G LAMB1 Silent p.F346F 0.23 TCGA-GN-A266-06 7 111379197 111379197 G A DOCK4 Missense_Mutation p.P1733L 0.36 deleterious(0.04) benign(0.06) TCGA-GN-A266-06 7 113518020 113518020 C T PPP1R3A Missense_Mutation p.E1043K 0.31 tolerated(0.09) benign(0.07) TCGA-GN-A266-06 7 113518037 113518037 G A PPP1R3A Missense_Mutation p.S1037L 0.17 tolerated(0.19) benign(0.02) TCGA-GN-A266-06 7 113518865 113518865 C T PPP1R3A Missense_Mutation p.R761Q 0.34 tolerated(0.18) benign(0.052) TCGA-GN-A266-06 7 113519169 113519169 C T PPP1R3A Missense_Mutation p.E660K 0.20 tolerated(0.17) benign(0.232) TCGA-GN-A266-06 7 113519874 113519874 C T PPP1R3A Missense_Mutation p.D425N 0.40 tolerated(0.11) benign(0.085) TCGA-GN-A266-06 7 113558648 113558648 G A PPP1R3A Missense_Mutation p.S135F 0.22 tolerated(0.9) benign(0.002) TCGA-GN-A266-06 7 115889084 115889084 C T TES Missense_Mutation p.R42C 0.36 deleterious(0.03) benign(0.139) TCGA-GN-A266-06 7 11633072 11633072 C G THSD7A Missense_Mutation p.E360D 0.45 tolerated(1) benign(0.052) TCGA-GN-A266-06 7 116380952 116380952 C A MET Missense_Mutation p.S525Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 7 116411553 116411553 G A MET Nonsense_Mutation p.W929* 0.12 TCGA-GN-A266-06 7 116418907 116418907 C T MET Missense_Mutation p.L1158F 0.19 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 7 116937698 116937698 G A WNT2 Missense_Mutation p.S274F 0.40 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 7 117400742 117400742 C T CTTNBP2 Silent p.R973R 0.18 TCGA-GN-A266-06 7 117450981 117450981 G A CTTNBP2 Silent p.F84F 0.16 TCGA-GN-A266-06 7 117876137 117876137 C T ANKRD7 Missense_Mutation p.P171S 0.08 tolerated(0.37) benign(0.248) TCGA-GN-A266-06 7 1197838 1197838 G A ZFAND2A Missense_Mutation p.P4L 0.13 deleterious(0.01) benign(0.083) TCGA-GN-A266-06 7 1197839 1197839 G A ZFAND2A Missense_Mutation p.P4S 0.13 deleterious(0) probably_damaging(0.919) TCGA-GN-A266-06 7 119915245 119915245 T C KCND2 Missense_Mutation p.F187L 0.22 tolerated(0.12) probably_damaging(0.998) TCGA-GN-A266-06 7 120740016 120740016 C T CPED1 Silent p.I262I 0.34 TCGA-GN-A266-06 7 121944266 121944266 G A FEZF1 Missense_Mutation p.P76S 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A266-06 7 122033545 122033545 G A CADPS2 Silent p.I946I 0.32 TCGA-GN-A266-06 7 122221237 122221237 C T CADPS2 Missense_Mutation p.G444E 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 7 122338482 122338482 A G RNF133 Missense_Mutation p.F164S 0.27 deleterious(0) benign(0.171) TCGA-GN-A266-06 7 122342631 122342631 C G RNF148 Missense_Mutation p.E58D 0.22 tolerated(0.07) possibly_damaging(0.75) TCGA-GN-A266-06 7 122634824 122634824 C T TAS2R16 Missense_Mutation p.G289R 0.33 tolerated(0.54) benign(0.016) TCGA-GN-A266-06 7 123152009 123152009 G A IQUB Missense_Mutation p.S129F 0.18 deleterious(0.02) benign(0.043) TCGA-GN-A266-06 7 123267301 123267301 C T ASB15 Missense_Mutation p.P279S 0.13 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 7 123269336 123269336 G A ASB15 Missense_Mutation p.V430I 0.41 tolerated(0.13) benign(0.005) TCGA-GN-A266-06 7 123334784 123334784 C T WASL Missense_Mutation p.E271K 0.16 tolerated(0.07) unknown(0) TCGA-GN-A266-06 7 123516852 123516852 G A HYAL4 Silent p.G363G 0.15 TCGA-GN-A266-06 7 123594008 123594008 G A SPAM1 Silent p.K128K 0.11 TCGA-GN-A266-06 7 123594434 123594434 T A SPAM1 Silent p.S270S 0.34 TCGA-GN-A266-06 7 123594435 123594435 C T SPAM1 Missense_Mutation p.P271S 0.33 tolerated(1) benign(0.001) TCGA-GN-A266-06 7 126079100 126079100 G A GRM8 3'UTR 0.30 TCGA-GN-A266-06 7 126079160 126079160 C T GRM8 3'UTR 0.25 TCGA-GN-A266-06 7 126086134 126086134 G A GRM8 Intron 0.30 TCGA-GN-A266-06 7 126086142 126086142 C T GRM8 Intron 0.31 TCGA-GN-A266-06 7 126173045 126173045 G A GRM8 Silent p.F797F 0.27 TCGA-GN-A266-06 7 12668822 12668822 C T SCIN Missense_Mutation p.P432S 0.30 tolerated(0.72) benign(0.006) TCGA-GN-A266-06 7 127235358 127235358 C T FSCN3 Intron 0.26 TCGA-GN-A266-06 7 127670245 127670245 C T LRRC4 Missense_Mutation p.R150Q 0.28 tolerated(0.11) benign(0.174) TCGA-GN-A266-06 7 128409143 128409143 C T CALU Silent p.I298I 0.34 TCGA-GN-A266-06 7 128494960 128494960 G A FLNC Missense_Mutation p.E2377K 0.29 deleterious(0.02) possibly_damaging(0.624) TCGA-GN-A266-06 7 129046260 129046260 C T AHCYL2 Silent p.S416S 0.32 TCGA-GN-A266-06 7 129856265 129856265 G A SSMEM1 Silent p.E230E 0.20 TCGA-GN-A266-06 7 131128415 131128415 C T MKLN1 Missense_Mutation p.P450L 0.13 tolerated(0.12) benign(0.005) TCGA-GN-A266-06 7 131172534 131172534 C T MKLN1 3'UTR 0.39 TCGA-GN-A266-06 7 131195814 131195814 C T PODXL Missense_Mutation p.G160E 0.11 tolerated(0.43) benign(0.003) TCGA-GN-A266-06 7 131925887 131925887 C T PLXNA4 Silent p.Q514Q 0.39 TCGA-GN-A266-06 7 132959761 132959761 C T EXOC4 Silent p.V37V 0.40 TCGA-GN-A266-06 7 134134532 134134532 G A AKR1B1 Silent p.F123F 0.39 TCGA-GN-A266-06 7 134217800 134217800 C T AKR1B10 Silent p.I132I 0.38 TCGA-GN-A266-06 7 134261723 134261723 C T AKR1B15 Silent p.I278I 0.17 TCGA-GN-A266-06 7 135279449 135279449 C T NUP205 Missense_Mutation p.S662F 0.29 deleterious(0.03) benign(0.045) TCGA-GN-A266-06 7 135378926 135378926 C T SLC13A4 Silent p.E359E 0.27 TCGA-GN-A266-06 7 136700504 136700504 G A CHRM2 Missense_Mutation p.D298N 0.42 tolerated(0.3) benign(0.284) TCGA-GN-A266-06 7 136936040 136936040 C T PTN Missense_Mutation p.E130K 0.32 deleterious(0.03) benign(0.328) TCGA-GN-A266-06 7 137776547 137776547 C T AKR1D1 Missense_Mutation p.R99C 0.26 deleterious(0) probably_damaging(0.95) TCGA-GN-A266-06 7 137790062 137790062 G A AKR1D1 Missense_Mutation p.A156T 0.40 deleterious(0.02) probably_damaging(0.914) TCGA-GN-A266-06 7 138213858 138213858 C T TRIM24 Intron 0.17 TCGA-GN-A266-06 7 138329483 138329483 C T SVOPL Silent p.G256G 0.40 TCGA-GN-A266-06 7 138487844 138487844 C T TMEM213 3'UTR 0.50 TCGA-GN-A266-06 7 138591789 138591789 G A KIAA1549 Silent p.I1112I 0.29 TCGA-GN-A266-06 7 138763369 138763369 G A ZC3HAV1 Missense_Mutation p.S501F 0.40 tolerated(0.1) benign(0) TCGA-GN-A266-06 7 139715636 139715636 G A TBXAS1 Missense_Mutation p.S494N 0.31 tolerated(0.25) benign(0.004) TCGA-GN-A266-06 7 139791650 139791650 C T KDM7A Silent p.K895K 0.09 TCGA-GN-A266-06 7 139791651 139791651 T A KDM7A Missense_Mutation p.K895M 0.10 deleterious(0) probably_damaging(0.952) TCGA-GN-A266-06 7 140080185 140080185 G A SLC37A3 Missense_Mutation p.S32L 0.26 deleterious(0.01) benign(0.223) TCGA-GN-A266-06 7 140301735 140301735 C T DENND2A Missense_Mutation p.D155N 0.32 tolerated(0.11) probably_damaging(0.915) TCGA-GN-A266-06 7 141490991 141490991 C T TAS2R5 Missense_Mutation p.P277L 0.34 tolerated(0.05) possibly_damaging(0.881) TCGA-GN-A266-06 7 141672477 141672477 C T TAS2R38 3'UTR 0.26 TCGA-GN-A266-06 7 141740542 141740542 G A MGAM Silent p.R798R 0.18 TCGA-GN-A266-06 7 141755472 141755472 G A MGAM Silent p.R1143R 0.17 TCGA-GN-A266-06 7 141760126 141760126 C T MGAM Missense_Mutation p.P1359S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A266-06 7 141765264 141765264 C T MGAM Silent p.I1538I 0.33 TCGA-GN-A266-06 7 141796206 141796206 C T MGAM Silent p.V1665V 0.32 TCGA-GN-A266-06 7 142013041 142013041 C T TRBV4-1 Silent p.G2G 0.29 TCGA-GN-A266-06 7 142032367 142032367 G A TRBV7-1 Missense_Mutation p.E63K 0.41 tolerated(0.25) benign(0.075) TCGA-GN-A266-06 7 142045755 142045755 C T TRBV4-2 Missense_Mutation p.L95F 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 142099651 142099651 G A TRBV7-8 Missense_Mutation p.L51F 0.28 tolerated(0.1) benign(0.424) TCGA-GN-A266-06 7 142111506 142111506 C T TRBV5-7 Missense_Mutation p.G77E 0.23 deleterious(0.04) probably_damaging(0.926) TCGA-GN-A266-06 7 142176577 142176577 C T TRBV7-4 Silent p.K33K 0.38 TCGA-GN-A266-06 7 142206977 142206977 G A TRBV10-2 5'UTR 0.13 TCGA-GN-A266-06 7 142423402 142423402 G A TRBV27 Missense_Mutation p.E20K 0.16 TCGA-GN-A266-06 7 142499057 142499057 G A TRBC2 Missense_Mutation p.D112N 0.13 tolerated(0.46) benign(0.001) TCGA-GN-A266-06 7 142566055 142566055 C T EPHB6 Nonsense_Mutation p.R659* 0.40 TCGA-GN-A266-06 7 142566827 142566827 C T EPHB6 Missense_Mutation p.S795L 0.22 deleterious(0) benign(0.001) TCGA-GN-A266-06 7 142572682 142572682 G A TRPV6 Missense_Mutation p.L421F 0.25 deleterious(0.01) benign(0.25) TCGA-GN-A266-06 7 142575515 142575515 C T TRPV6 Missense_Mutation p.E80K 0.31 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 7 142638490 142638490 C T KEL Missense_Mutation p.R683K 0.24 tolerated(0.94) benign(0.015) TCGA-GN-A266-06 7 142650976 142650976 G A KEL Missense_Mutation p.P331L 0.34 tolerated(0.97) benign(0.021) TCGA-GN-A266-06 7 142650977 142650977 G A KEL Missense_Mutation p.P331S 0.35 tolerated(0.6) benign(0.035) TCGA-GN-A266-06 7 142919780 142919780 C T TAS2R40 Silent p.F203F 0.37 TCGA-GN-A266-06 7 143016884 143016884 G A CLCN1 Missense_Mutation p.E73K 0.15 tolerated(0.39) benign(0.011) TCGA-GN-A266-06 7 143028356 143028356 C T CLCN1 Silent p.F337F 0.22 TCGA-GN-A266-06 7 143049049 143049049 G A CLCN1 Silent p.L986L 0.29 TCGA-GN-A266-06 7 143053835 143053835 T A FAM131B Silent p.A297A 0.15 TCGA-GN-A266-06 7 143453537 143453537 C T CTAGE6 Silent p.E405E 0.20 TCGA-GN-A266-06 7 143454007 143454007 C T CTAGE6 Missense_Mutation p.E249K 0.25 deleterious(0.03) possibly_damaging(0.452) TCGA-GN-A266-06 7 143701353 143701353 G A OR6B1 Silent p.V88V 0.17 TCGA-GN-A266-06 7 143747527 143747527 C T OR2A5 Silent p.F11F 0.27 TCGA-GN-A266-06 7 143771368 143771368 G A OR2A25 Missense_Mutation p.G19D 0.31 tolerated(0.58) benign(0.001) TCGA-GN-A266-06 7 143772188 143772188 G A OR2A25 Silent p.R292R 0.34 TCGA-GN-A266-06 7 143882655 143882655 G A CTAGE4 Missense_Mutation p.E687K 0.26 tolerated(0.11) benign(0.059) TCGA-GN-A266-06 7 143882811 143882811 C T CTAGE4 Missense_Mutation p.P739S 0.09 deleterious(0) benign(0.098) TCGA-GN-A266-06 7 14613992 14613992 C T DGKB Missense_Mutation p.E540K 0.30 deleterious(0.01) probably_damaging(0.934) TCGA-GN-A266-06 7 146997283 146997283 G A CNTNAP2 Missense_Mutation p.E467K 0.23 tolerated(0.28) benign(0.065) TCGA-GN-A266-06 7 147964131 147964131 C T CNTNAP2 Missense_Mutation p.H1130Y 0.11 deleterious(0) possibly_damaging(0.886) TCGA-GN-A266-06 7 148080978 148080978 C T CNTNAP2 Missense_Mutation p.S1238L 0.32 tolerated(0.07) benign(0.031) TCGA-GN-A266-06 7 1482016 1482016 A G MICALL2 Missense_Mutation p.L508P 0.34 tolerated(0.31) benign(0.004) TCGA-GN-A266-06 7 148709376 148709376 G A PDIA4 Missense_Mutation p.P231S 0.30 tolerated(0.1) benign(0.128) TCGA-GN-A266-06 7 148801241 148801241 C T ZNF425 Silent p.R574R 0.23 TCGA-GN-A266-06 7 148801242 148801242 C T ZNF425 Missense_Mutation p.R574Q 0.22 tolerated(0.19) possibly_damaging(0.607) TCGA-GN-A266-06 7 149483309 149483309 G A SSPO Intron 0.38 TCGA-GN-A266-06 7 149503080 149503080 C T SSPO RNA 0.32 TCGA-GN-A266-06 7 150217443 150217443 G A GIMAP7 Missense_Mutation p.M127I 0.15 deleterious(0.03) possibly_damaging(0.777) TCGA-GN-A266-06 7 150325191 150325191 C T GIMAP6 Silent p.K165K 0.37 TCGA-GN-A266-06 7 150439746 150439746 G A GIMAP5 Silent p.L173L 0.39 TCGA-GN-A266-06 7 150648587 150648587 G A KCNH2 Missense_Mutation p.P632S 0.42 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 7 150703536 150703536 G A NOS3 Missense_Mutation p.E592K 0.35 tolerated(0.34) possibly_damaging(0.716) TCGA-GN-A266-06 7 150746440 150746440 C T ASIC3 Silent p.S156S 0.23 TCGA-GN-A266-06 7 151127123 151127123 C T CRYGN 3'UTR 0.32 TCGA-GN-A266-06 7 151135011 151135011 A T CRYGN Intron 0.13 TCGA-GN-A266-06 7 151135012 151135012 C T CRYGN Intron 0.13 TCGA-GN-A266-06 7 151135258 151135258 C T CRYGN Missense_Mutation p.D32N 0.23 deleterious(0.04) probably_damaging(0.964) TCGA-GN-A266-06 7 151849883 151849883 G A KMT2C Missense_Mutation p.R4145C 0.27 possibly_damaging(0.776) TCGA-GN-A266-06 7 151874081 151874081 G A KMT2C Silent p.T2819T 0.29 TCGA-GN-A266-06 7 151884809 151884809 G A KMT2C Missense_Mutation p.P1595L 0.28 benign(0.044) TCGA-GN-A266-06 7 154876048 154876048 C T HTR5A Missense_Mutation p.P309S 0.40 deleterious(0.03) probably_damaging(0.989) TCGA-GN-A266-06 7 158718935 158718935 C T WDR60 Missense_Mutation p.S772L 0.45 deleterious(0.01) possibly_damaging(0.587) TCGA-GN-A266-06 7 158827297 158827297 C T VIPR2 Missense_Mutation p.R285Q 0.23 deleterious(0.04) probably_damaging(0.983) TCGA-GN-A266-06 7 18066524 18066524 C T PRPS1L1 Missense_Mutation p.M294I 0.22 tolerated(0.4) benign(0.002) TCGA-GN-A266-06 7 18624924 18624924 C T HDAC9 Missense_Mutation p.P15S 0.16 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-GN-A266-06 7 19739834 19739834 G A TWISTNB Missense_Mutation p.P156S 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 20441433 20441433 A G ITGB8 Silent p.E457E 0.29 TCGA-GN-A266-06 7 20721209 20721209 G A ABCB5 Missense_Mutation p.D597N 0.16 tolerated(0.39) benign(0.044) TCGA-GN-A266-06 7 21789935 21789935 G A DNAH11 Missense_Mutation p.E2972K 0.47 probably_damaging(0.976) TCGA-GN-A266-06 7 23293046 23293046 G A GPNMB Missense_Mutation p.R64Q 0.16 tolerated(0.31) benign(0.016) TCGA-GN-A266-06 7 23509771 23509771 G A IGF2BP3 5'UTR 0.10 TCGA-GN-A266-06 7 23825160 23825160 G A STK31 Missense_Mutation p.E738K 0.19 tolerated(0.08) possibly_damaging(0.463) TCGA-GN-A266-06 7 24663366 24663366 G A MPP6 Missense_Mutation p.G27E 0.23 deleterious(0) probably_damaging(0.939) TCGA-GN-A266-06 7 24854706 24854706 G A OSBPL3 Missense_Mutation p.S715F 0.33 tolerated(0.05) possibly_damaging(0.673) TCGA-GN-A266-06 7 24901383 24901383 C T OSBPL3 Silent p.P292P 0.43 TCGA-GN-A266-06 7 27140492 27140492 G A HOXA2 Silent p.F328F 0.37 TCGA-GN-A266-06 7 27204563 27204563 C T HOXA9 Missense_Mutation p.E172K 0.36 tolerated(0.5) benign(0.253) TCGA-GN-A266-06 7 27570934 27570934 G A HIBADH Silent p.I243I 0.30 TCGA-GN-A266-06 7 2968236 2968236 G A CARD11 Missense_Mutation p.R584C 0.30 tolerated(0.08) benign(0.005) TCGA-GN-A266-06 7 2976698 2976698 G A CARD11 Silent p.L438L 0.25 TCGA-GN-A266-06 7 29927732 29927732 C T WIPF3 Missense_Mutation p.S383L 0.26 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 7 30492014 30492014 C G NOD1 Missense_Mutation p.R340P 0.28 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 7 30642717 30642717 C T GARS Missense_Mutation p.R213C 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 30793422 30793422 C T INMT Missense_Mutation p.S77F 0.37 deleterious(0.04) possibly_damaging(0.688) TCGA-GN-A266-06 7 31683179 31683179 G A CCDC129 Missense_Mutation p.G758E 0.16 tolerated(0.52) benign(0.079) TCGA-GN-A266-06 7 31855719 31855719 C T PDE1C Silent p.E604E 0.39 TCGA-GN-A266-06 7 31887604 31887604 T G PDE1C Missense_Mutation p.N380H 0.09 tolerated(0.06) probably_damaging(1) TCGA-GN-A266-06 7 32110059 32110059 C T PDE1C Intron 0.45 TCGA-GN-A266-06 7 34192975 34192975 G A BMPER 3'UTR 0.45 TCGA-GN-A266-06 7 34982235 34982235 G A DPY19L1 Missense_Mutation p.H448Y 0.23 tolerated(0.19) benign(0.013) TCGA-GN-A266-06 7 35130016 35130016 G A DPY19L2P1 RNA 0.31 TCGA-GN-A266-06 7 36895236 36895236 C - ELMO1 Frame_Shift_Del p.E702Kfs*43 0.32 TCGA-GN-A266-06 7 37889893 37889893 C T NME8 Nonsense_Mutation p.Q9* 0.40 TCGA-GN-A266-06 7 37916527 37916527 C T NME8 Silent p.F304F 0.28 TCGA-GN-A266-06 7 38500990 38500990 G A AMPH Missense_Mutation p.P304S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A266-06 7 3861081 3861081 G A SDK1 Splice_Site p.X238_splice 0.31 TCGA-GN-A266-06 7 38768147 38768147 G A VPS41 Missense_Mutation p.P800L 0.28 tolerated(0.62) benign(0.079) TCGA-GN-A266-06 7 39503872 39503872 C T POU6F2 Missense_Mutation p.L555F 0.29 deleterious_low_confidence(0) unknown(0) TCGA-GN-A266-06 7 39503873 39503873 T C POU6F2 Missense_Mutation p.L555P 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A266-06 7 39612009 39612009 C T YAE1D1 Missense_Mutation p.H129Y 0.39 deleterious(0.01) possibly_damaging(0.556) TCGA-GN-A266-06 7 3990647 3990647 G A SDK1 Missense_Mutation p.E314K 0.38 deleterious(0) benign(0.445) TCGA-GN-A266-06 7 40037178 40037178 C T CDK13 Missense_Mutation p.P653S 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A266-06 7 41729281 41729281 C T INHBA Silent p.Q416Q 0.43 TCGA-GN-A266-06 7 4188998 4188998 C T SDK1 Missense_Mutation p.R1510W 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 4304908 4304908 G T SDK1 Silent p.A2178A 0.45 TCGA-GN-A266-06 7 43484268 43484268 G A HECW1 Silent p.R499R 0.33 TCGA-GN-A266-06 7 44556493 44556493 G A NPC1L1 Missense_Mutation p.P1137S 0.17 tolerated(0.3) benign(0.439) TCGA-GN-A266-06 7 47694908 47694908 G A C7orf65 Missense_Mutation p.G11E 0.30 tolerated_low_confidence(0.24) probably_damaging(0.969) TCGA-GN-A266-06 7 47879094 47879094 G A PKD1L1 Missense_Mutation p.R1907C 0.12 tolerated(0.07) benign(0.112) TCGA-GN-A266-06 7 47930266 47930266 G A PKD1L1 Missense_Mutation p.S850F 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-GN-A266-06 7 48273745 48273745 G A ABCA13 Silent p.K298K 0.47 TCGA-GN-A266-06 7 48317803 48317803 C T ABCA13 Missense_Mutation p.H2338Y 0.20 benign(0.001) TCGA-GN-A266-06 7 50605602 50605602 C T DDC Missense_Mutation p.A131T 0.21 tolerated(0.24) benign(0.002) TCGA-GN-A266-06 7 50605603 50605603 C T DDC Silent p.K130K 0.20 TCGA-GN-A266-06 7 5103977 5103977 C T RBAK Missense_Mutation p.S297F 0.41 deleterious(0) probably_damaging(0.991) TCGA-GN-A266-06 7 51094344 51094344 C T COBL Missense_Mutation p.E1135K 0.36 tolerated(0.12) benign(0.099) TCGA-GN-A266-06 7 53103598 53103598 C T POM121L12 Silent p.I78I 0.35 TCGA-GN-A266-06 7 53103609 53103609 C T POM121L12 Missense_Mutation p.P82L 0.35 tolerated(0.43) benign(0) TCGA-GN-A266-06 7 53103787 53103787 C T POM121L12 Silent p.I141I 0.24 TCGA-GN-A266-06 7 5338676 5338676 G A SLC29A4 Missense_Mutation p.E314K 0.35 tolerated(0.09) benign(0.426) TCGA-GN-A266-06 7 5410863 5410863 G A TNRC18 Missense_Mutation p.P1121L 0.22 probably_damaging(0.959) TCGA-GN-A266-06 7 55210029 55210029 C T EGFR Missense_Mutation p.H47Y 0.15 deleterious(0) probably_damaging(0.975) TCGA-GN-A266-06 7 55259426 55259426 G A EGFR Silent p.L828L 0.18 TCGA-GN-A266-06 7 55266472 55266472 G A EGFR Missense_Mutation p.E922K 0.28 deleterious(0.05) benign(0.414) TCGA-GN-A266-06 7 55752937 55752937 C T RNU6-389P 5'Flank 0.15 TCGA-GN-A266-06 7 55752938 55752938 C T RNU6-389P 5'Flank 0.16 TCGA-GN-A266-06 7 55863612 55863612 C T SEPT14 Silent p.K431K 0.30 TCGA-GN-A266-06 7 56149359 56149359 C T PHKG1 Silent p.E326E 0.13 TCGA-GN-A266-06 7 56174180 56174180 G A CHCHD2 5'UTR 0.37 TCGA-GN-A266-06 7 5643510 5643510 C T FSCN1 Silent p.F376F 0.19 TCGA-GN-A266-06 7 5879594 5879594 C G ZNF815P RNA 0.40 TCGA-GN-A266-06 7 6370581 6370581 G A FAM220A Missense_Mutation p.P69S 0.44 tolerated(0.32) possibly_damaging(0.782) TCGA-GN-A266-06 7 63726795 63726795 C T ZNF679 Missense_Mutation p.H262Y 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A266-06 7 6426907 6426907 C T RAC1 Missense_Mutation p.P34S 0.23 deleterious(0.01) probably_damaging(0.941) TCGA-GN-A266-06 7 64292269 64292269 C T ZNF138 Missense_Mutation p.H191Y 0.43 tolerated(0.08) benign(0.285) TCGA-GN-A266-06 7 6744829 6744829 G A ZNF12 5'UTR 0.28 TCGA-GN-A266-06 7 6838117 6838117 G A RSPH10B2 Silent p.E852E 0.60 TCGA-GN-A266-06 7 70231204 70231204 C T AUTS2 Missense_Mutation p.H525Y 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A266-06 7 70853359 70853359 C T WBSCR17 Silent p.I187I 0.14 TCGA-GN-A266-06 7 72416817 72416817 T A POM121 Intron 0.61 TCGA-GN-A266-06 7 72658536 72658536 C T GTF2IRD2P1 RNA 0.23 TCGA-GN-A266-06 7 72743446 72743446 G A FKBP6 Missense_Mutation p.G87R 0.37 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 7 73249193 73249193 G C WBSCR27 Silent p.T206T 0.21 TCGA-GN-A266-06 7 73279939 73279939 C T WBSCR28 Silent p.L178L 0.39 TCGA-GN-A266-06 7 73513401 73513401 C T LIMK1 Silent p.I147I 0.21 TCGA-GN-A266-06 7 73770739 73770739 G A CLIP2 Splice_Site p.X268_splice 0.26 TCGA-GN-A266-06 7 74211373 74211373 G A GTF2IRD2 Silent p.I826I 0.12 TCGA-GN-A266-06 7 75051364 75051364 G A POM121C Missense_Mutation p.P724L 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A266-06 7 75186992 75186992 G A HIP1 Missense_Mutation p.S516L 0.40 deleterious(0.04) benign(0.011) TCGA-GN-A266-06 7 7529073 7529073 C T COL28A1 Missense_Mutation p.E371K 0.34 deleterious(0.02) possibly_damaging(0.585) TCGA-GN-A266-06 7 7572534 7572534 C T COL28A1 5'UTR 0.43 TCGA-GN-A266-06 7 76111856 76111856 C T DTX2 Silent p.F100F 0.31 TCGA-GN-A266-06 7 76825644 76825644 G A FGL2 Silent p.S424S 0.10 TCGA-GN-A266-06 7 76825985 76825985 C T FGL2 Missense_Mutation p.E311K 0.27 tolerated(0.93) benign(0) TCGA-GN-A266-06 7 77756673 77756673 G A MAGI2 Silent p.F1088F 0.29 TCGA-GN-A266-06 7 77824342 77824342 C T MAGI2 Silent p.T706T 0.17 TCGA-GN-A266-06 7 79818490 79818490 T C GNAI1 Silent p.I82I 0.27 TCGA-GN-A266-06 7 81372745 81372745 G A HGF Silent p.P263P 0.19 TCGA-GN-A266-06 7 82390025 82390025 C A PCLO Missense_Mutation p.R5073I 0.19 unknown(0) TCGA-GN-A266-06 7 82451874 82451874 C T PCLO Missense_Mutation p.E4910K 0.27 unknown(0) TCGA-GN-A266-06 7 82475901 82475901 G A PCLO Missense_Mutation p.H4605Y 0.19 unknown(0) TCGA-GN-A266-06 7 82544526 82544526 G A PCLO Missense_Mutation p.S4259F 0.50 unknown(0) TCGA-GN-A266-06 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.28 unknown(0) TCGA-GN-A266-06 7 82578833 82578833 C T PCLO Missense_Mutation p.E3691K 0.25 unknown(0) TCGA-GN-A266-06 7 82581291 82581291 G A PCLO Missense_Mutation p.S2993F 0.28 unknown(0) TCGA-GN-A266-06 7 82582368 82582368 G A PCLO Missense_Mutation p.S2634F 0.38 unknown(0) TCGA-GN-A266-06 7 82583731 82583731 C T PCLO Missense_Mutation p.D2180N 0.38 unknown(0) TCGA-GN-A266-06 7 82583938 82583938 G A PCLO Missense_Mutation p.L2111F 0.48 unknown(0) TCGA-GN-A266-06 7 82584822 82584822 G A PCLO Missense_Mutation p.A1816V 0.24 unknown(0) TCGA-GN-A266-06 7 82585639 82585639 C T PCLO Missense_Mutation p.E1544K 0.25 unknown(0) TCGA-GN-A266-06 7 82595680 82595680 C T PCLO Missense_Mutation p.E1142K 0.43 unknown(0) TCGA-GN-A266-06 7 82763878 82763878 C T PCLO Silent p.V996V 0.18 TCGA-GN-A266-06 7 82763974 82763974 C T PCLO Missense_Mutation p.M964I 0.41 unknown(0) TCGA-GN-A266-06 7 82997202 82997202 C T SEMA3E Silent p.E676E 0.25 TCGA-GN-A266-06 7 83016310 83016310 T A SEMA3E Missense_Mutation p.Q575L 0.17 tolerated(0.52) benign(0.004) TCGA-GN-A266-06 7 83029528 83029528 G A SEMA3E Silent p.T394T 0.16 TCGA-GN-A266-06 7 83029529 83029529 G A SEMA3E Missense_Mutation p.T394I 0.16 deleterious(0) probably_damaging(0.964) TCGA-GN-A266-06 7 83590814 83590814 C T SEMA3A Missense_Mutation p.R730Q 0.26 deleterious(0.02) benign(0.295) TCGA-GN-A266-06 7 84697527 84697527 G A SEMA3D Missense_Mutation p.P190L 0.48 tolerated(0.23) possibly_damaging(0.825) TCGA-GN-A266-06 7 86468384 86468384 G A GRM3 Missense_Mutation p.M518I 0.24 tolerated(0.73) benign(0.004) TCGA-GN-A266-06 7 86468417 86468417 G A GRM3 Nonsense_Mutation p.W529* 0.25 TCGA-GN-A266-06 7 86468644 86468644 C T GRM3 Missense_Mutation p.P605L 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 86468955 86468955 C T GRM3 Silent p.L709L 0.17 TCGA-GN-A266-06 7 86521037 86521037 C T KIAA1324L Intron 0.28 TCGA-GN-A266-06 7 86526867 86526867 C G KIAA1324L Missense_Mutation p.E880D 0.14 tolerated(0.28) possibly_damaging(0.669) TCGA-GN-A266-06 7 87148741 87148741 G A ABCB1 Missense_Mutation p.S943F 0.36 deleterious(0) probably_damaging(0.972) TCGA-GN-A266-06 7 87179839 87179839 C T ABCB1 Missense_Mutation p.G390E 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 87214993 87214993 G A ABCB1 Missense_Mutation p.R41C 0.54 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A266-06 7 87774472 87774472 C T ADAM22 Silent p.F451F 0.40 TCGA-GN-A266-06 7 87792331 87792331 G A ADAM22 Missense_Mutation p.G638R 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 87792332 87792332 G A ADAM22 Missense_Mutation p.G638E 0.18 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 7 87792381 87792381 G A ADAM22 Silent p.G654G 0.54 TCGA-GN-A266-06 7 87912071 87912071 C T STEAP4 Missense_Mutation p.R290Q 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 7 87912132 87912132 G A STEAP4 Silent p.L270L 0.13 TCGA-GN-A266-06 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.19 tolerated(0.07) benign(0.032) TCGA-GN-A266-06 7 88963763 88963763 G A ZNF804B Silent p.K489K 0.31 TCGA-GN-A266-06 7 88964781 88964781 G A ZNF804B Missense_Mutation p.D829N 0.25 tolerated(0.19) possibly_damaging(0.743) TCGA-GN-A266-06 7 89938629 89938629 G A C7orf63 Missense_Mutation p.R868Q 0.32 tolerated(0.21) benign(0.016) TCGA-GN-A266-06 7 91718797 91718797 G A AKAP9 Silent p.R3104R 0.12 TCGA-GN-A266-06 7 92732986 92732986 G A SAMD9 Missense_Mutation p.L809F 0.26 tolerated(0.5) benign(0.007) TCGA-GN-A266-06 7 93098044 93098044 C T CALCR Silent p.G186G 0.26 TCGA-GN-A266-06 7 93108777 93108777 G A CALCR Missense_Mutation p.P50S 0.32 tolerated(0.07) benign(0.023) TCGA-GN-A266-06 7 93518426 93518426 G A TFPI2 Silent p.S127S 0.42 TCGA-GN-A266-06 7 94049955 94049955 C T COL1A2 Missense_Mutation p.P764S 0.71 unknown(0) TCGA-GN-A266-06 7 94051242 94051242 G A COL1A2 Missense_Mutation p.R794Q 0.18 unknown(0) TCGA-GN-A266-06 7 94052311 94052311 G A COL1A2 Missense_Mutation p.E816K 0.24 unknown(0) TCGA-GN-A266-06 7 94053670 94053670 C T COL1A2 Missense_Mutation p.P863L 0.35 unknown(0) TCGA-GN-A266-06 7 94897975 94897975 G A PPP1R9A Missense_Mutation p.D927N 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-GN-A266-06 7 95025659 95025659 C T PON3 Missense_Mutation p.G2R 0.35 deleterious(0.01) unknown(0) TCGA-GN-A266-06 7 95222119 95222119 C T PDK4 Missense_Mutation p.R161Q 0.52 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 7 95222231 95222231 G A PDK4 Nonsense_Mutation p.R124* 0.43 TCGA-GN-A266-06 7 96339008 96339008 G A SHFM1 Missense_Mutation p.P23L 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-GN-A266-06 7 96746947 96746947 C T ACN9 5'UTR 0.47 TCGA-GN-A266-06 7 97483989 97483989 G A ASNS Missense_Mutation p.P381S 0.35 deleterious(0) possibly_damaging(0.8) TCGA-GN-A266-06 7 97488238 97488238 G A ASNS Missense_Mutation p.L235F 0.32 deleterious(0.02) benign(0.028) TCGA-GN-A266-06 7 98452871 98452871 G A TMEM130 Silent p.F265F 0.39 TCGA-GN-A266-06 7 98509658 98509658 C T TRRAP Missense_Mutation p.S674F 0.26 possibly_damaging(0.459) TCGA-GN-A266-06 7 98565207 98565207 C T TRRAP Silent p.F2459F 0.18 TCGA-GN-A266-06 7 99022765 99022765 G A ATP5J2-PTCD1 Missense_Mutation p.R513W 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 7 99308381 99308381 C T CYP3A7 Missense_Mutation p.E334K 0.34 deleterious(0.02) possibly_damaging(0.852) TCGA-GN-A266-06 7 99447176 99447176 G A CYP3A43 Missense_Mutation p.G177R 0.18 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 7 99999545 99999545 C T ZCWPW1 Missense_Mutation p.E531K 0.17 tolerated(0.14) benign(0.043) TCGA-GN-A266-06 8 100520086 100520086 C T VPS13B Nonsense_Mutation p.R1416* 0.30 TCGA-GN-A266-06 8 100844860 100844860 G A VPS13B Silent p.R3223R 0.14 TCGA-GN-A266-06 8 101014554 101014554 C T RGS22 Missense_Mutation p.R889Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 8 101016271 101016271 C T RGS22 Missense_Mutation p.R837Q 0.36 tolerated(0.46) benign(0.001) TCGA-GN-A266-06 8 101083607 101083607 G A RGS22 Missense_Mutation p.S195L 0.21 deleterious(0.02) probably_damaging(0.949) TCGA-GN-A266-06 8 102582566 102582566 G A GRHL2 Splice_Site p.X227_splice 0.20 TCGA-GN-A266-06 8 10468882 10468882 C T RP1L1 Missense_Mutation p.R909K 0.17 benign(0.092) TCGA-GN-A266-06 8 10470431 10470431 C T RP1L1 Missense_Mutation p.E393K 0.39 benign(0.092) TCGA-GN-A266-06 8 10473967 10473967 C T RP1L1 Missense_Mutation p.R247K 0.35 benign(0.243) TCGA-GN-A266-06 8 104898041 104898041 A G RIMS2 Missense_Mutation p.E405G 0.35 tolerated_low_confidence(0.15) benign(0.025) TCGA-GN-A266-06 8 105257166 105257166 G A RIMS2 Silent p.R1119R 0.34 TCGA-GN-A266-06 8 105263968 105263968 C T RIMS2 Missense_Mutation p.P1324S 0.28 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-GN-A266-06 8 105405184 105405184 T A DPYS Missense_Mutation p.N424I 0.26 deleterious(0) possibly_damaging(0.61) TCGA-GN-A266-06 8 10583780 10583780 A T SOX7 Missense_Mutation p.V264E 0.26 tolerated(0.22) possibly_damaging(0.463) TCGA-GN-A266-06 8 10583781 10583781 C T SOX7 Missense_Mutation p.V264M 0.26 tolerated(0.09) possibly_damaging(0.812) TCGA-GN-A266-06 8 108306175 108306175 C A ANGPT1 Nonsense_Mutation p.E343* 0.32 TCGA-GN-A266-06 8 108306176 108306176 C T ANGPT1 Silent p.K342K 0.33 TCGA-GN-A266-06 8 110131616 110131616 C T TRHR Silent p.L377L 0.26 TCGA-GN-A266-06 8 110255462 110255462 G A NUDCD1 Missense_Mutation p.L510F 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-GN-A266-06 8 110255463 110255463 G A NUDCD1 Silent p.A509A 0.23 TCGA-GN-A266-06 8 110439294 110439294 G A PKHD1L1 Missense_Mutation p.G970E 0.23 deleterious(0.02) possibly_damaging(0.892) TCGA-GN-A266-06 8 110451198 110451198 G A PKHD1L1 Missense_Mutation p.G1278E 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 110453508 110453508 C T PKHD1L1 Silent p.S1368S 0.20 TCGA-GN-A266-06 8 11189494 11189494 C T SLC35G5 Silent p.A293A 0.37 TCGA-GN-A266-06 8 113392632 113392632 A T CSMD3 Missense_Mutation p.F2029I 0.30 deleterious(0) probably_damaging(0.966) TCGA-GN-A266-06 8 113516034 113516034 G A CSMD3 Missense_Mutation p.H1690Y 0.18 tolerated(0.72) possibly_damaging(0.842) TCGA-GN-A266-06 8 113518964 113518964 A T CSMD3 Silent p.T1617T 0.16 TCGA-GN-A266-06 8 113668412 113668412 G A CSMD3 Missense_Mutation p.S992F 0.13 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 113841934 113841934 G A CSMD3 Missense_Mutation p.P614S 0.21 tolerated(0.88) benign(0.31) TCGA-GN-A266-06 8 113871494 113871494 C T CSMD3 Silent p.V545V 0.33 TCGA-GN-A266-06 8 11606581 11606581 C T GATA4 Missense_Mutation p.P257L 0.43 deleterious(0) possibly_damaging(0.636) TCGA-GN-A266-06 8 118184871 118184871 C T SLC30A8 Missense_Mutation p.P354L 0.42 tolerated(0.37) benign(0.006) TCGA-GN-A266-06 8 119122824 119122824 A T EXT1 Missense_Mutation p.F154L 0.40 tolerated(0.3) possibly_damaging(0.872) TCGA-GN-A266-06 8 119938929 119938929 G A TNFRSF11B Silent p.F207F 0.35 TCGA-GN-A266-06 8 11995285 11995285 T A USP17L2 Missense_Mutation p.S329C 0.14 deleterious(0.02) benign(0.015) TCGA-GN-A266-06 8 11995287 11995287 C T USP17L2 Nonsense_Mutation p.W328* 0.15 TCGA-GN-A266-06 8 120079596 120079596 C T COLEC10 Silent p.L26L 0.18 TCGA-GN-A266-06 8 121015293 121015293 T A DEPTOR Missense_Mutation p.F290I 0.33 tolerated(0.13) benign(0.01) TCGA-GN-A266-06 8 121209076 121209076 C T COL14A1 Silent p.I161I 0.30 TCGA-GN-A266-06 8 121220585 121220585 G A COL14A1 Missense_Mutation p.G436R 0.17 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 8 121220586 121220586 G A COL14A1 Missense_Mutation p.G436E 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 121381671 121381671 C T COL14A1 Missense_Mutation p.S1753F 0.30 deleterious(0) possibly_damaging(0.613) TCGA-GN-A266-06 8 121426320 121426320 A G MRPL13 Missense_Mutation p.V142A 0.53 tolerated(0.06) benign(0.016) TCGA-GN-A266-06 8 121457627 121457627 G A MRPL13 5'Flank 0.21 TCGA-GN-A266-06 8 122626715 122626715 G A HAS2 Silent p.I431I 0.26 TCGA-GN-A266-06 8 12285121 12285121 G A FAM86B2 Intron 0.15 TCGA-GN-A266-06 8 124371873 124371873 G A ATAD2 Nonsense_Mutation p.R404* 0.20 TCGA-GN-A266-06 8 124658100 124658100 G A KLHL38 Missense_Mutation p.S542F 0.23 deleterious(0) possibly_damaging(0.737) TCGA-GN-A266-06 8 124664648 124664648 C T KLHL38 Silent p.K173K 0.37 TCGA-GN-A266-06 8 124748070 124748070 C T ANXA13 Silent p.G21G 0.31 TCGA-GN-A266-06 8 125015487 125015487 C T FER1L6 Missense_Mutation p.P534S 0.44 tolerated(0.37) probably_damaging(0.972) TCGA-GN-A266-06 8 125061997 125061997 G A FER1L6 Silent p.Q958Q 0.15 TCGA-GN-A266-06 8 125082726 125082726 G A FER1L6 Missense_Mutation p.E1285K 0.14 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 125463294 125463294 C T TRMT12 Silent p.L42L 0.16 TCGA-GN-A266-06 8 128428154 128428154 C T POU5F1B Missense_Mutation p.P15S 0.38 tolerated(0.12) possibly_damaging(0.664) TCGA-GN-A266-06 8 131792772 131792772 C T ADCY8 Missense_Mutation p.R1207K 0.24 tolerated(1) benign(0) TCGA-GN-A266-06 8 131792904 131792904 C T ADCY8 Missense_Mutation p.G1163E 0.30 deleterious(0) benign(0.02) TCGA-GN-A266-06 8 131792927 131792927 C T ADCY8 Silent p.V1155V 0.33 TCGA-GN-A266-06 8 133044178 133044178 G A OC90 Silent p.G327G 0.35 TCGA-GN-A266-06 8 133048626 133048626 G A OC90 Intron 0.30 TCGA-GN-A266-06 8 133141540 133141540 G A KCNQ3 Missense_Mutation p.S863L 0.21 tolerated_low_confidence(0.23) possibly_damaging(0.851) TCGA-GN-A266-06 8 133144457 133144457 C T KCNQ3 Missense_Mutation p.M618I 0.14 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 8 133192419 133192419 G A KCNQ3 Silent p.I254I 0.36 TCGA-GN-A266-06 8 133844532 133844532 T A PHF20L1 Silent p.S599S 0.27 TCGA-GN-A266-06 8 133894774 133894774 C T TG Missense_Mutation p.S269F 0.24 tolerated(0.37) possibly_damaging(0.643) TCGA-GN-A266-06 8 133899330 133899330 C T TG Silent p.L571L 0.39 TCGA-GN-A266-06 8 133923647 133923647 C T TG Missense_Mutation p.S1343F 0.41 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 8 133925407 133925407 C T TG Silent p.L1425L 0.14 TCGA-GN-A266-06 8 133935696 133935696 G T TG Missense_Mutation p.G1548W 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 136533592 136533592 C T KHDRBS3 Silent p.F67F 0.32 TCGA-GN-A266-06 8 139144796 139144796 C T FAM135B 3'UTR 0.38 TCGA-GN-A266-06 8 139151271 139151271 C T FAM135B Missense_Mutation p.D1287N 0.30 deleterious(0.02) probably_damaging(0.909) TCGA-GN-A266-06 8 139153476 139153476 C T FAM135B Missense_Mutation p.G1252E 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 13965684 13965684 G A SGCZ Missense_Mutation p.S203F 0.31 tolerated(1) benign(0.018) TCGA-GN-A266-06 8 141675044 141675044 G A PTK2 Missense_Mutation p.P986L 0.16 deleterious(0.03) probably_damaging(1) TCGA-GN-A266-06 8 142186792 142186792 G A DENND3 Missense_Mutation p.E800K 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 143846075 143846075 C T LYNX1 Missense_Mutation p.G115D 0.34 deleterious(0) probably_damaging(0.924) TCGA-GN-A266-06 8 14412247 14412247 G A SGCZ Silent p.F76F 0.10 TCGA-GN-A266-06 8 144358575 144358575 C A GLI4 Nonsense_Mutation p.C244* 0.43 TCGA-GN-A266-06 8 144940440 144940440 C T EPPK1 Missense_Mutation p.D2328N 0.06 benign(0.343) TCGA-GN-A266-06 8 144996879 144996879 G A PLEC Silent p.F2543F 0.38 TCGA-GN-A266-06 8 145058554 145058554 G A PARP10 Missense_Mutation p.R502W 0.36 deleterious(0) benign(0.353) TCGA-GN-A266-06 8 145095983 145095983 C T SPATC1 Silent p.T427T 0.24 TCGA-GN-A266-06 8 145111556 145111556 G A OPLAH Silent p.P603P 0.17 TCGA-GN-A266-06 8 145641426 145641426 C T SLC39A4 Missense_Mutation p.G81E 0.44 tolerated(0.58) benign(0.033) TCGA-GN-A266-06 8 145773399 145773399 G A ARHGAP39 Silent p.L357L 0.31 TCGA-GN-A266-06 8 145947750 145947750 G A ZNF251 Missense_Mutation p.P432L 0.34 deleterious(0.03) probably_damaging(0.929) TCGA-GN-A266-06 8 1497566 1497566 A G DLGAP2 Missense_Mutation p.N236S 0.32 tolerated(0.71) benign(0.001) TCGA-GN-A266-06 8 15978105 15978105 C T MSR1 Silent p.T348T 0.39 TCGA-GN-A266-06 8 16007775 16007775 C T MSR1 Missense_Mutation p.G315E 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 16007784 16007784 C T MSR1 Missense_Mutation p.G312D 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 16021701 16021701 T A MSR1 Missense_Mutation p.K230N 0.28 tolerated(0.07) benign(0.078) TCGA-GN-A266-06 8 16026228 16026228 C T MSR1 Silent p.K123K 0.29 TCGA-GN-A266-06 8 17132409 17132409 C T VPS37A Missense_Mutation p.S195L 0.25 tolerated(0.08) benign(0.003) TCGA-GN-A266-06 8 18080218 18080218 C T NAT1 Missense_Mutation p.S283L 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 18258007 18258007 G A NAT2 Missense_Mutation p.R165K 0.18 tolerated(0.78) benign(0.074) TCGA-GN-A266-06 8 18725306 18725306 G A PSD3 Silent p.I504I 0.31 TCGA-GN-A266-06 8 1905131 1905131 C T ARHGEF10 Missense_Mutation p.S1246L 0.38 tolerated(0.1) possibly_damaging(0.559) TCGA-GN-A266-06 8 19684029 19684029 C T INTS10 Missense_Mutation p.H367Y 0.30 deleterious(0) benign(0.319) TCGA-GN-A266-06 8 2007281 2007281 G C MYOM2 Missense_Mutation p.D190H 0.21 deleterious(0) possibly_damaging(0.89) TCGA-GN-A266-06 8 21560429 21560429 G A GFRA2 Missense_Mutation p.S369L 0.33 tolerated(0.72) benign(0) TCGA-GN-A266-06 8 21562498 21562498 G A GFRA2 Silent p.L348L 0.26 TCGA-GN-A266-06 8 21766993 21766993 G A DOK2 Silent p.L356L 0.16 TCGA-GN-A266-06 8 21979167 21979167 G A HR Missense_Mutation p.S721F 0.39 deleterious(0) possibly_damaging(0.897) TCGA-GN-A266-06 8 22864607 22864607 C T RHOBTB2 Silent p.I305I 0.29 TCGA-GN-A266-06 8 22995467 22995467 C T TNFRSF10D Silent p.K359K 0.23 TCGA-GN-A266-06 8 23002145 23002145 G A TNFRSF10D Missense_Mutation p.L258F 0.20 tolerated(1) benign(0.007) TCGA-GN-A266-06 8 23003353 23003353 G A TNFRSF10D Silent p.S188S 0.14 TCGA-GN-A266-06 8 23538787 23538787 G A NKX3-1 Missense_Mutation p.P218S 0.29 deleterious(0.03) possibly_damaging(0.874) TCGA-GN-A266-06 8 23702352 23702352 G A STC1 Silent p.L225L 0.31 TCGA-GN-A266-06 8 24167449 24167449 G A ADAM28 Missense_Mutation p.G65R 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 24168913 24168913 G A ADAM28 Missense_Mutation p.V116I 0.33 tolerated(0.21) benign(0.009) TCGA-GN-A266-06 8 24181412 24181412 G A ADAM28 Silent p.K262K 0.29 TCGA-GN-A266-06 8 24187614 24187614 G A ADAM28 Missense_Mutation p.M363I 0.35 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 8 24193068 24193068 G A ADAM28 Missense_Mutation p.G494D 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.51 TCGA-GN-A266-06 8 24253266 24253266 G A ADAMDEC1 Missense_Mutation p.E133K 0.21 deleterious(0.01) probably_damaging(0.909) TCGA-GN-A266-06 8 24346778 24346778 C T ADAM7 Missense_Mutation p.H400Y 0.22 tolerated(0.74) benign(0) TCGA-GN-A266-06 8 24772225 24772225 A T NEFM Nonsense_Mutation p.K307* 0.54 TCGA-GN-A266-06 8 25747281 25747281 G A EBF2 Silent p.L246L 0.36 TCGA-GN-A266-06 8 26627640 26627640 C T ADRA1A Intron 0.20 TCGA-GN-A266-06 8 27288543 27288543 G A PTK2B Intron 0.28 TCGA-GN-A266-06 8 27315813 27315813 C T PTK2B Silent p.I939I 0.28 TCGA-GN-A266-06 8 27456060 27456060 G A CLU Silent p.V419V 0.11 TCGA-GN-A266-06 8 27516524 27516524 C T SCARA3 Silent p.I279I 0.31 TCGA-GN-A266-06 8 28196969 28196969 G A PNOC 3'UTR 0.26 TCGA-GN-A266-06 8 2820869 2820869 C T CSMD1 Missense_Mutation p.G3110E 0.28 probably_damaging(1) TCGA-GN-A266-06 8 28574866 28574866 C T EXTL3 Silent p.F430F 0.24 TCGA-GN-A266-06 8 29043831 29043831 G A KIF13B Nonsense_Mutation p.R159* 0.34 TCGA-GN-A266-06 8 3038724 3038724 G A CSMD1 Missense_Mutation p.P1878L 0.23 probably_damaging(0.989) TCGA-GN-A266-06 8 30694351 30694351 C T TEX15 Missense_Mutation p.R2767Q 0.47 tolerated(0.05) benign(0.073) TCGA-GN-A266-06 8 30695200 30695200 G A TEX15 Missense_Mutation p.S2484F 0.33 tolerated(0.73) benign(0.007) TCGA-GN-A266-06 8 30699863 30699863 C T TEX15 Missense_Mutation p.G2224E 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 30699874 30699874 C T TEX15 Silent p.R2220R 0.21 TCGA-GN-A266-06 8 30701332 30701332 T G TEX15 Silent p.P1734P 0.18 TCGA-GN-A266-06 8 30706008 30706008 C T TEX15 Missense_Mutation p.E176K 0.14 tolerated(0.1) possibly_damaging(0.544) TCGA-GN-A266-06 8 30706067 30706067 G A TEX15 Missense_Mutation p.S156F 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-GN-A266-06 8 3081268 3081268 G A CSMD1 Silent p.I1489I 0.20 TCGA-GN-A266-06 8 31015025 31015025 C T WRN Nonsense_Mutation p.R1321* 0.22 TCGA-GN-A266-06 8 3141814 3141814 C T CSMD1 Nonsense_Mutation p.W1335* 0.37 TCGA-GN-A266-06 8 3165891 3165891 G A CSMD1 Silent p.L1256L 0.33 TCGA-GN-A266-06 8 32472036 32472036 C T NRG1 Silent p.I135I 0.09 TCGA-GN-A266-06 8 32505638 32505638 G T NRG1 Intron 0.14 TCGA-GN-A266-06 8 35453116 35453116 C T UNC5D Missense_Mutation p.P171S 0.26 tolerated(0.85) benign(0.177) TCGA-GN-A266-06 8 35606087 35606087 C T UNC5D Silent p.V603V 0.27 TCGA-GN-A266-06 8 36641933 36641933 T A KCNU1 Missense_Mutation p.F2Y 0.27 tolerated_low_confidence(0.26) benign(0.003) TCGA-GN-A266-06 8 36663823 36663823 G A KCNU1 Missense_Mutation p.E169K 0.38 deleterious(0) probably_damaging(0.964) TCGA-GN-A266-06 8 37633525 37633525 C T PROSC Silent p.F229F 0.27 TCGA-GN-A266-06 8 38146187 38146187 G A WHSC1L1 Missense_Mutation p.P1107S 0.26 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 385643 385643 C T FBXO25 Missense_Mutation p.A106V 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-GN-A266-06 8 39495178 39495178 G A ADAM18 Silent p.R261R 0.13 TCGA-GN-A266-06 8 39506003 39506003 G A ADAM18 Missense_Mutation p.G396E 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A266-06 8 39627020 39627020 G A ADAM2 Missense_Mutation p.S368F 0.20 deleterious(0) benign(0.115) TCGA-GN-A266-06 8 39627032 39627032 G A ADAM2 Missense_Mutation p.S364L 0.31 tolerated(0.09) possibly_damaging(0.461) TCGA-GN-A266-06 8 39775453 39775453 C T IDO1 Silent p.L49L 0.22 TCGA-GN-A266-06 8 41552776 41552776 C T ANK1 Missense_Mutation p.E1053K 0.37 deleterious(0) possibly_damaging(0.465) TCGA-GN-A266-06 8 41566470 41566470 G A ANK1 Silent p.I641I 0.29 TCGA-GN-A266-06 8 41581147 41581147 C T ANK1 Missense_Mutation p.G272D 0.12 tolerated(0.37) probably_damaging(1) TCGA-GN-A266-06 8 41801318 41801318 C T KAT6A Missense_Mutation p.D726N 0.27 probably_damaging(0.981) TCGA-GN-A266-06 8 42162742 42162742 C T IKBKB Silent p.I142I 0.26 TCGA-GN-A266-06 8 42587688 42587688 G A CHRNB3 Missense_Mutation p.S413N 0.14 tolerated(0.63) benign(0.007) TCGA-GN-A266-06 8 42977352 42977352 C T POMK Missense_Mutation p.L129F 0.28 tolerated(0.12) possibly_damaging(0.811) TCGA-GN-A266-06 8 48790352 48790352 G A PRKDC Missense_Mutation p.L1765F 0.24 possibly_damaging(0.828) TCGA-GN-A266-06 8 51569490 51569490 G A SNTG1 Missense_Mutation p.E291K 0.16 tolerated(0.38) benign(0.045) TCGA-GN-A266-06 8 53073993 53073993 G A ST18 Silent p.F512F 0.14 TCGA-GN-A266-06 8 53084550 53084550 C T ST18 Missense_Mutation p.E291K 0.17 tolerated(0.05) benign(0.007) TCGA-GN-A266-06 8 53092862 53092862 C T ST18 Missense_Mutation p.D33N 0.20 tolerated(0.33) benign(0.009) TCGA-GN-A266-06 8 53586631 53586631 G A RB1CC1 Missense_Mutation p.P259L 0.19 tolerated(0.62) benign(0) TCGA-GN-A266-06 8 54714393 54714393 G A ATP6V1H Missense_Mutation p.R215C 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 55539665 55539665 G A RP1 Missense_Mutation p.E1075K 0.31 tolerated(0.75) benign(0.291) TCGA-GN-A266-06 8 55540720 55540720 G A RP1 Silent p.R1426R 0.31 TCGA-GN-A266-06 8 55541954 55541954 C T RP1 Missense_Mutation p.R1838C 0.33 deleterious(0) possibly_damaging(0.707) TCGA-GN-A266-06 8 56435906 56435906 G A XKR4 Missense_Mutation p.R358Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 8 56668905 56668905 C A TMEM68 Nonsense_Mutation p.G131* 0.11 TCGA-GN-A266-06 8 56863069 56863069 C T LYN Silent p.F112F 0.38 TCGA-GN-A266-06 8 56912099 56912099 C T LYN Missense_Mutation p.P443S 0.17 deleterious(0) probably_damaging(0.99) TCGA-GN-A266-06 8 57079555 57079555 G A PLAG1 Silent p.F250F 0.30 TCGA-GN-A266-06 8 57214016 57214016 G A SDR16C5 3'UTR 0.17 TCGA-GN-A266-06 8 57228816 57228816 G A SDR16C5 Missense_Mutation p.L31F 0.27 tolerated(0.31) benign(0.303) TCGA-GN-A266-06 8 57353773 57353773 C T PENK 3'UTR 0.29 TCGA-GN-A266-06 8 57353905 57353905 C T PENK Missense_Mutation p.D244N 0.12 tolerated(0.11) benign(0.052) TCGA-GN-A266-06 8 59404243 59404243 G A CYP7A1 Missense_Mutation p.P436S 0.09 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 8 61769330 61769330 C A CHD7 Silent p.L2497L 0.31 TCGA-GN-A266-06 8 61769331 61769331 C T CHD7 Missense_Mutation p.L2498F 0.30 possibly_damaging(0.755) TCGA-GN-A266-06 8 6357506 6357506 A G ANGPT2 3'UTR 0.33 TCGA-GN-A266-06 8 63927919 63927919 G A GGH Missense_Mutation p.S310L 0.15 tolerated(0.65) benign(0.004) TCGA-GN-A266-06 8 65517309 65517309 C T CYP7B1 Missense_Mutation p.R388Q 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 67066357 67066357 G A TRIM55 Missense_Mutation p.D438N 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.798) TCGA-GN-A266-06 8 67086938 67086938 G A TRIM55 3'UTR 0.46 TCGA-GN-A266-06 8 6728169 6728169 C T DEFB1 3'UTR 0.25 TCGA-GN-A266-06 8 67547298 67547298 G A VCPIP1 Missense_Mutation p.S1036F 0.42 deleterious_low_confidence(0.01) benign(0.444) TCGA-GN-A266-06 8 6782399 6782399 C T DEFA6 Missense_Mutation p.E82K 0.33 deleterious(0.01) possibly_damaging(0.883) TCGA-GN-A266-06 8 6782404 6782404 G A DEFA6 Missense_Mutation p.S80L 0.31 tolerated(0.68) benign(0.006) TCGA-GN-A266-06 8 68658352 68658352 C T CPA6 Missense_Mutation p.G5R 0.17 tolerated_low_confidence(0.14) benign(0.001) TCGA-GN-A266-06 8 69351845 69351845 G A C8orf34 Missense_Mutation p.G147R 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A266-06 8 69351846 69351846 G A C8orf34 Missense_Mutation p.G147E 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A266-06 8 69381034 69381034 G A C8orf34 Missense_Mutation p.A239T 0.31 tolerated(0.18) probably_damaging(0.999) TCGA-GN-A266-06 8 70501326 70501326 G A SULF1 Silent p.E228E 0.23 TCGA-GN-A266-06 8 70501327 70501327 G T SULF1 Missense_Mutation p.D229Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 8 70517057 70517057 G A SULF1 Missense_Mutation p.E423K 0.31 tolerated(0.14) benign(0.038) TCGA-GN-A266-06 8 71069324 71069324 G A NCOA2 Missense_Mutation p.P426S 0.20 tolerated(0.52) benign(0.002) TCGA-GN-A266-06 8 73479948 73479948 C T KCNB2 5'UTR 0.29 TCGA-GN-A266-06 8 73849256 73849256 C T KCNB2 Missense_Mutation p.P556S 0.25 tolerated_low_confidence(0.54) benign(0.005) TCGA-GN-A266-06 8 74922261 74922261 C T LY96 Silent p.F76F 0.22 TCGA-GN-A266-06 8 76471140 76471140 A C HNF4G Silent p.R321R 0.13 TCGA-GN-A266-06 8 7680921 7680921 G A DEFB105A Missense_Mutation p.S32F 0.10 deleterious(0.03) probably_damaging(0.962) TCGA-GN-A266-06 8 77618729 77618729 G A ZFHX4 Missense_Mutation p.M802I 0.18 benign(0.043) TCGA-GN-A266-06 8 77764749 77764749 G A ZFHX4 Silent p.K1864K 0.27 TCGA-GN-A266-06 8 77767262 77767262 G A ZFHX4 Missense_Mutation p.G2702E 0.29 probably_damaging(0.999) TCGA-GN-A266-06 8 77768521 77768521 C T ZFHX4 Missense_Mutation p.P3122S 0.25 possibly_damaging(0.778) TCGA-GN-A266-06 8 77895647 77895647 G A PEX2 Silent p.T256T 0.18 TCGA-GN-A266-06 8 81897132 81897132 G A PAG1 Missense_Mutation p.P252L 0.32 tolerated(0.45) benign(0.004) TCGA-GN-A266-06 8 85097159 85097159 G A RALYL 5'UTR 0.53 TCGA-GN-A266-06 8 85097230 85097230 C T RALYL 5'UTR 0.09 TCGA-GN-A266-06 8 86249251 86249251 G A CA1 Nonsense_Mutation p.Q93* 0.37 TCGA-GN-A266-06 8 87151710 87151710 G A ATP6V0D2 Silent p.V109V 0.22 TCGA-GN-A266-06 8 87241866 87241866 C T SLC7A13 Missense_Mutation p.G214E 0.11 deleterious(0) probably_damaging(0.993) TCGA-GN-A266-06 8 87917373 87917373 C T CNBD1 Silent p.L75L 0.32 TCGA-GN-A266-06 8 88365873 88365873 C T CNBD1 Nonsense_Mutation p.Q388* 0.26 TCGA-GN-A266-06 8 88885275 88885275 C T DCAF4L2 Missense_Mutation p.E309K 0.25 tolerated(0.59) benign(0.012) TCGA-GN-A266-06 8 89058988 89058988 C T MMP16 Missense_Mutation p.M466I 0.12 tolerated(0.08) benign(0.004) TCGA-GN-A266-06 8 8999144 8999144 G A PPP1R3B Silent p.I6I 0.45 TCGA-GN-A266-06 8 92364064 92364064 C T SLC26A7 Silent p.F389F 0.28 TCGA-GN-A266-06 8 94746800 94746800 G A RBM12B Silent p.H613H 0.25 TCGA-GN-A266-06 8 94828745 94828745 T C TMEM67 3'UTR 0.29 TCGA-GN-A266-06 8 94935465 94935465 C T PDP1 Missense_Mutation p.P418L 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 8 96259812 96259812 G T C8orf37 3'UTR 0.42 TCGA-GN-A266-06 8 98657030 98657030 C T MTDH Missense_Mutation p.A99V 0.30 tolerated(0.24) benign(0.185) TCGA-GN-A266-06 8 99146817 99146817 C T POP1 Missense_Mutation p.S314F 0.25 deleterious(0) possibly_damaging(0.62) TCGA-GN-A266-06 9 100888952 100888952 G A CORO2A Missense_Mutation p.S442F 0.41 tolerated(0.37) benign(0.001) TCGA-GN-A266-06 9 100899903 100899903 C T CORO2A Nonsense_Mutation p.W90* 0.21 TCGA-GN-A266-06 9 101056138 101056138 C T GABBR2 Silent p.Q863Q 0.39 TCGA-GN-A266-06 9 103111464 103111464 A T TEX10 Splice_Site p.X60_splice 0.14 TCGA-GN-A266-06 9 104032288 104032288 G A LPPR1 Missense_Mutation p.E64K 0.29 tolerated(0.06) benign(0.125) TCGA-GN-A266-06 9 104238324 104238324 G A TMEM246 Silent p.L351L 0.19 TCGA-GN-A266-06 9 104238325 104238325 G A TMEM246 Silent p.Y350Y 0.19 TCGA-GN-A266-06 9 104356750 104356750 C T PPP3R2 Missense_Mutation p.E155K 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 9 104390670 104390670 G A GRIN3A Missense_Mutation p.S789F 0.49 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 107266684 107266684 C T OR13F1 Silent p.S47S 0.37 TCGA-GN-A266-06 9 107267146 107267146 G A OR13F1 Silent p.V201V 0.25 TCGA-GN-A266-06 9 107267348 107267348 G A OR13F1 Missense_Mutation p.E269K 0.29 tolerated(0.62) benign(0.186) TCGA-GN-A266-06 9 107288831 107288831 G A OR13C4 Silent p.F220F 0.36 TCGA-GN-A266-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.37 TCGA-GN-A266-06 9 107331602 107331602 G A OR13C8 Missense_Mutation p.D52N 0.41 deleterious(0.03) possibly_damaging(0.526) TCGA-GN-A266-06 9 107331603 107331603 A T OR13C8 Missense_Mutation p.D52V 0.41 deleterious(0.01) benign(0.439) TCGA-GN-A266-06 9 107367602 107367602 G A OR13C2 Missense_Mutation p.L103F 0.25 tolerated(0.25) benign(0.037) TCGA-GN-A266-06 9 108424936 108424936 C T TAL2 Silent p.F53F 0.31 TCGA-GN-A266-06 9 109687619 109687619 C T ZNF462 Missense_Mutation p.P476S 0.21 possibly_damaging(0.641) TCGA-GN-A266-06 9 112168865 112168865 C T PTPN3 Missense_Mutation p.D557N 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 9 112963499 112963499 C T C9orf152 Missense_Mutation p.R150K 0.16 deleterious(0.03) possibly_damaging(0.572) TCGA-GN-A266-06 9 113189870 113189870 C T SVEP1 Splice_Site p.X1992_splice 0.16 TCGA-GN-A266-06 9 113192662 113192662 C T SVEP1 Missense_Mutation p.G1808S 0.28 probably_damaging(0.976) TCGA-GN-A266-06 9 113241922 113241922 C T SVEP1 Missense_Mutation p.G827E 0.17 possibly_damaging(0.721) TCGA-GN-A266-06 9 113734378 113734378 G A LPAR1 Missense_Mutation p.S7F 0.20 tolerated_low_confidence(0.07) benign(0.008) TCGA-GN-A266-06 9 114090020 114090020 C T OR2K2 Missense_Mutation p.G232R 0.22 deleterious(0.01) probably_damaging(1) TCGA-GN-A266-06 9 114538131 114538131 C T C9orf84 Missense_Mutation p.E64K 0.22 deleterious(0.04) benign(0.434) TCGA-GN-A266-06 9 115337393 115337393 C T KIAA1958 Missense_Mutation p.H345Y 0.18 tolerated(1) benign(0.008) TCGA-GN-A266-06 9 115421617 115421617 C T KIAA1958 Silent p.F473F 0.40 TCGA-GN-A266-06 9 115478792 115478792 A G INIP 5'UTR 0.43 TCGA-GN-A266-06 9 115580005 115580005 C T SNX30 Silent p.D123D 0.19 TCGA-GN-A266-06 9 115760556 115760556 C T ZNF883 RNA 0.09 TCGA-GN-A266-06 9 116078962 116078962 G A WDR31 3'UTR 0.22 TCGA-GN-A266-06 9 116094253 116094253 G A WDR31 Missense_Mutation p.S17L 0.43 tolerated_low_confidence(0.73) benign(0) TCGA-GN-A266-06 9 116930420 116930420 C T COL27A1 Silent p.G195G 0.17 TCGA-GN-A266-06 9 117099518 117099518 G A AKNA Missense_Mutation p.P1379L 0.14 tolerated(0.06) benign(0.07) TCGA-GN-A266-06 9 117552725 117552725 T C TNFSF15 3'UTR 0.19 TCGA-GN-A266-06 9 117554687 117554687 C T TNFSF15 Missense_Mutation p.V101I 0.23 tolerated(0.22) benign(0.016) TCGA-GN-A266-06 9 117786291 117786291 G A TNC Silent p.V2152V 0.40 TCGA-GN-A266-06 9 117810577 117810577 C T TNC Missense_Mutation p.G1605E 0.28 deleterious(0.05) probably_damaging(0.973) TCGA-GN-A266-06 9 117819660 117819660 G A TNC Missense_Mutation p.P1451S 0.19 tolerated(0.36) benign(0.021) TCGA-GN-A266-06 9 117848531 117848531 C T TNC Silent p.G493G 0.18 TCGA-GN-A266-06 9 117849292 117849292 C T TNC Missense_Mutation p.E240K 0.30 tolerated(0.09) benign(0.19) TCGA-GN-A266-06 9 118969825 118969825 G A PAPPA Silent p.E523E 0.21 TCGA-GN-A266-06 9 119065059 119065059 C T PAPPA Missense_Mutation p.H993Y 0.30 tolerated(0.76) benign(0.152) TCGA-GN-A266-06 9 119739047 119739047 C T ASTN2 Missense_Mutation p.E486K 0.67 deleterious(0.01) unknown(0) TCGA-GN-A266-06 9 119903672 119903672 G A ASTN2 Intron 0.42 TCGA-GN-A266-06 9 119976741 119976741 C T ASTN2 Missense_Mutation p.R304Q 0.16 tolerated_low_confidence(0.46) unknown(0) TCGA-GN-A266-06 9 120474857 120474857 A T TLR4 Missense_Mutation p.T151S 0.16 tolerated(0.17) benign(0.081) TCGA-GN-A266-06 9 120474858 120474858 C A TLR4 Missense_Mutation p.T151N 0.16 deleterious(0.03) benign(0.363) TCGA-GN-A266-06 9 120475051 120475051 G A TLR4 Missense_Mutation p.M215I 0.26 tolerated(1) benign(0) TCGA-GN-A266-06 9 120475867 120475867 C T TLR4 Silent p.F487F 0.38 TCGA-GN-A266-06 9 121971125 121971125 C T BRINP1 Silent p.Q339Q 0.29 TCGA-GN-A266-06 9 121971207 121971207 G A BRINP1 Missense_Mutation p.S312L 0.19 tolerated(0.26) possibly_damaging(0.879) TCGA-GN-A266-06 9 123673735 123673735 C T TRAF1 Silent p.E254E 0.22 TCGA-GN-A266-06 9 123768255 123768255 C T C5 Missense_Mutation p.R835Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 123935993 123935993 G T CNTRL Missense_Mutation p.R2242L 0.10 probably_damaging(0.965) TCGA-GN-A266-06 9 124979471 124979471 G A LHX6 Silent p.F186F 0.13 TCGA-GN-A266-06 9 125140749 125140749 C T PTGS1 Silent p.P83P 0.28 TCGA-GN-A266-06 9 125273488 125273488 G A OR1J2 Missense_Mutation p.M136I 0.27 deleterious_low_confidence(0.01) benign(0.259) TCGA-GN-A266-06 9 125437963 125437963 G A OR1L3 Silent p.L185L 0.22 TCGA-GN-A266-06 9 125946485 125946485 T A STRBP 5'UTR 0.33 TCGA-GN-A266-06 9 126144874 126144874 G A DENND1A Missense_Mutation p.R623C 0.24 deleterious(0.02) benign(0.008) TCGA-GN-A266-06 9 12695730 12695730 C T TYRP1 Missense_Mutation p.L201F 0.12 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 9 127316765 127316765 G A NR6A1 Missense_Mutation p.S76F 0.35 deleterious(0) probably_damaging(0.988) TCGA-GN-A266-06 9 127620225 127620225 G A RPL35 Missense_Mutation p.P115L 0.26 tolerated(0.05) benign(0.023) TCGA-GN-A266-06 9 127651553 127651553 G A GOLGA1 Nonsense_Mutation p.Q544* 0.26 TCGA-GN-A266-06 9 127762192 127762192 G A SCAI Nonsense_Mutation p.Q431* 0.33 TCGA-GN-A266-06 9 127915938 127915938 C T PPP6C Silent p.R218R 0.31 TCGA-GN-A266-06 9 128086088 128086088 C T GAPVD1 Missense_Mutation p.R582C 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 12821462 12821462 G A LURAP1L Nonsense_Mutation p.W130* 0.37 TCGA-GN-A266-06 9 130117638 130117638 C T GARNL3 Missense_Mutation p.R608W 0.21 deleterious(0.02) probably_damaging(1) TCGA-GN-A266-06 9 130493720 130493720 G A TTC16 3'UTR 0.30 TCGA-GN-A266-06 9 130502567 130502567 G A SH2D3C Missense_Mutation p.P724S 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 9 131390214 131390214 C T SPTAN1 Missense_Mutation p.L2234F 0.19 deleterious(0.02) possibly_damaging(0.663) TCGA-GN-A266-06 9 131745227 131745227 C T NUP188 Silent p.V572V 0.39 TCGA-GN-A266-06 9 131802941 131802941 C T FAM73B Missense_Mutation p.P23L 0.14 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 132862932 132862932 C T GPR107 Nonsense_Mutation p.Q322* 0.26 TCGA-GN-A266-06 9 134342990 134342990 C T PRRC2B Silent p.F587F 0.64 TCGA-GN-A266-06 9 134385753 134385753 C T POMT1 Missense_Mutation p.S291F 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 135513680 135513680 T G DDX31 Intron 0.29 TCGA-GN-A266-06 9 135946024 135946024 G A CEL Nonsense_Mutation p.W491* 0.38 TCGA-GN-A266-06 9 136307852 136307852 C T ADAMTS13 Missense_Mutation p.P741L 0.18 deleterious(0.02) possibly_damaging(0.613) TCGA-GN-A266-06 9 136315040 136315040 C T ADAMTS13 Missense_Mutation p.R1000C 0.27 deleterious(0) probably_damaging(0.982) TCGA-GN-A266-06 9 136412220 136412220 A G ADAMTSL2 Missense_Mutation p.K275R 0.18 tolerated(0.14) benign(0.034) TCGA-GN-A266-06 9 136599120 136599120 G A SARDH Missense_Mutation p.P59L 0.26 tolerated(0.07) benign(0.005) TCGA-GN-A266-06 9 137619121 137619121 C T COL5A1 Nonsense_Mutation p.Q222* 0.18 TCGA-GN-A266-06 9 137645726 137645726 G A COL5A1 Missense_Mutation p.E584K 0.13 probably_damaging(0.997) TCGA-GN-A266-06 9 137687129 137687129 C T COL5A1 Missense_Mutation p.P923S 0.12 unknown(0) TCGA-GN-A266-06 9 137697046 137697046 C T COL5A1 Missense_Mutation p.P1082S 0.16 unknown(0) TCGA-GN-A266-06 9 137702112 137702112 G A COL5A1 Silent p.G1162G 0.27 TCGA-GN-A266-06 9 137772724 137772724 C T FCN2 Silent p.F19F 0.19 TCGA-GN-A266-06 9 138441153 138441153 G A OBP2A Splice_Site p.X164_splice 0.18 TCGA-GN-A266-06 9 138555245 138555245 G A LCN9 Silent p.R26R 0.37 TCGA-GN-A266-06 9 138556077 138556077 C T LCN9 Silent p.L56L 0.33 TCGA-GN-A266-06 9 138683979 138683979 C T KCNT1 Missense_Mutation p.P1227L 0.31 deleterious_low_confidence(0.03) benign(0.019) TCGA-GN-A266-06 9 139232392 139232392 C T GPSM1 Silent p.R264R 0.27 TCGA-GN-A266-06 9 139345853 139345853 G A SEC16A Missense_Mutation p.S2056L 0.12 tolerated(0.05) benign(0.009) TCGA-GN-A266-06 9 139658319 139658319 C T LCN15 Intron 0.15 TCGA-GN-A266-06 9 139793174 139793174 C T TRAF2 5'UTR 0.28 TCGA-GN-A266-06 9 139846814 139846814 C G LCN12 Missense_Mutation p.S12C 0.26 tolerated(0.12) unknown(0) TCGA-GN-A266-06 9 139877949 139877949 G A LCNL1 5'UTR 0.12 TCGA-GN-A266-06 9 139945719 139945719 C T ENTPD2 Missense_Mutation p.E164K 0.22 deleterious(0.01) possibly_damaging(0.582) TCGA-GN-A266-06 9 140074659 140074659 A G ANAPC2 Missense_Mutation p.Y622H 0.12 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 9 140437926 140437926 G A PNPLA7 Missense_Mutation p.S155F 0.30 deleterious(0.04) possibly_damaging(0.525) TCGA-GN-A266-06 9 140708909 140708909 C T EHMT1 Silent p.S1069S 0.27 TCGA-GN-A266-06 9 140777318 140777318 C T CACNA1B Silent p.F171F 0.13 TCGA-GN-A266-06 9 140953602 140953602 C T CACNA1B Silent p.S1515S 0.64 TCGA-GN-A266-06 9 141010045 141010045 G A CACNA1B Silent p.L1897L 0.08 TCGA-GN-A266-06 9 141010047 141010047 A G CACNA1B Missense_Mutation p.E1898G 0.10 tolerated(0.21) benign(0.042) TCGA-GN-A266-06 9 14618989 14618989 G A ZDHHC21 Missense_Mutation p.P258L 0.45 tolerated(0.23) benign(0.105) TCGA-GN-A266-06 9 14674372 14674372 G A ZDHHC21 5'UTR 0.26 TCGA-GN-A266-06 9 14746467 14746467 C T FREM1 Splice_Site p.X2047_splice 0.13 TCGA-GN-A266-06 9 14759820 14759820 C T FREM1 Missense_Mutation p.E1762K 0.33 tolerated(0.97) benign(0.006) TCGA-GN-A266-06 9 14789061 14789061 C T FREM1 Missense_Mutation p.E1345K 0.60 deleterious(0.04) benign(0.071) TCGA-GN-A266-06 9 14801703 14801703 G A FREM1 Missense_Mutation p.P1214L 0.49 tolerated(0.47) benign(0.002) TCGA-GN-A266-06 9 14819263 14819263 A T FREM1 Missense_Mutation p.S839T 0.31 tolerated(0.86) benign(0.004) TCGA-GN-A266-06 9 14841568 14841568 G A FREM1 Silent p.F586F 0.23 TCGA-GN-A266-06 9 14842657 14842657 C T FREM1 Silent p.G465G 0.43 TCGA-GN-A266-06 9 14863874 14863874 C T FREM1 Missense_Mutation p.E88K 0.46 deleterious(0.02) possibly_damaging(0.691) TCGA-GN-A266-06 9 18504852 18504852 A C ADAMTSL1 Missense_Mutation p.E30A 0.39 deleterious(0) possibly_damaging(0.887) TCGA-GN-A266-06 9 19058421 19058421 C T HAUS6 Missense_Mutation p.E782K 0.11 deleterious(0) probably_damaging(0.968) TCGA-GN-A266-06 9 19423880 19423880 C T ACER2 Silent p.F43F 0.43 TCGA-GN-A266-06 9 19786487 19786487 G A SLC24A2 Silent p.S126S 0.43 TCGA-GN-A266-06 9 21029392 21029392 C T PTPLAD2 Missense_Mutation p.R15K 0.16 tolerated(0.94) benign(0) TCGA-GN-A266-06 9 21166283 21166283 G A IFNA21 Missense_Mutation p.T110I 0.13 deleterious(0.05) benign(0.015) TCGA-GN-A266-06 9 21239548 21239548 C T IFNA14 Silent p.V129V 0.23 TCGA-GN-A266-06 9 21239574 21239574 C T IFNA14 Missense_Mutation p.A121T 0.40 tolerated(0.31) possibly_damaging(0.616) TCGA-GN-A266-06 9 21384864 21384864 C T IFNA2 Silent p.E155E 0.16 TCGA-GN-A266-06 9 21481607 21481607 G A IFNE Silent p.F29F 0.16 TCGA-GN-A266-06 9 23704986 23704986 C T ELAVL2 Silent p.K139K 0.35 TCGA-GN-A266-06 9 23765006 23765006 C T ELAVL2 Intron 0.33 TCGA-GN-A266-06 9 2647568 2647568 C T VLDLR Nonsense_Mutation p.Q600* 0.12 TCGA-GN-A266-06 9 2648285 2648285 C T VLDLR Missense_Mutation p.R634C 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 9 26926415 26926415 T A PLAA Missense_Mutation p.I237L 0.24 tolerated(0.6) benign(0.01) TCGA-GN-A266-06 9 2718181 2718181 G A KCNV2 Missense_Mutation p.E148K 0.21 deleterious(0) probably_damaging(0.996) TCGA-GN-A266-06 9 27949575 27949575 C T LINGO2 Nonsense_Mutation p.W365* 0.23 TCGA-GN-A266-06 9 3225181 3225181 G A RFX3 Missense_Mutation p.P704L 0.39 tolerated_low_confidence(0.13) benign(0.004) TCGA-GN-A266-06 9 32477025 32477025 C T DDX58 Missense_Mutation p.E627K 0.19 deleterious(0.03) benign(0.015) TCGA-GN-A266-06 9 32541428 32541428 G A TOPORS Missense_Mutation p.S1032L 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A266-06 9 32543665 32543665 G A TOPORS Silent p.F286F 0.20 TCGA-GN-A266-06 9 32630258 32630258 C T TAF1L Missense_Mutation p.E1774K 0.24 tolerated_low_confidence(0.06) benign(0.201) TCGA-GN-A266-06 9 32630383 32630383 G A TAF1L Missense_Mutation p.P1732L 0.44 tolerated_low_confidence(0.28) benign(0.122) TCGA-GN-A266-06 9 32631765 32631765 C T TAF1L Silent p.K1271K 0.21 TCGA-GN-A266-06 9 32631806 32631806 C T TAF1L Missense_Mutation p.E1258K 0.16 deleterious(0.05) possibly_damaging(0.684) TCGA-GN-A266-06 9 32635017 32635017 G A TAF1L Silent p.P187P 0.18 TCGA-GN-A266-06 9 32784491 32784491 G A TMEM215 Missense_Mutation p.G104S 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A266-06 9 33062142 33062142 G A SMU1 Missense_Mutation p.P179S 0.32 tolerated(0.09) benign(0.021) TCGA-GN-A266-06 9 33120558 33120558 A G B4GALT1 Missense_Mutation p.F232S 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 9 33240224 33240224 G A SPINK4 Nonsense_Mutation p.W6* 0.25 TCGA-GN-A266-06 9 33352709 33352709 T C NFX1 Silent p.T907T 0.22 TCGA-GN-A266-06 9 33441852 33441852 G A AQP3 3'UTR 0.27 TCGA-GN-A266-06 9 33441853 33441853 G A AQP3 3'UTR 0.27 TCGA-GN-A266-06 9 33676283 33676283 G A PTENP1 RNA 0.21 TCGA-GN-A266-06 9 34397524 34397524 G A C9orf24 Silent p.A36A 0.11 TCGA-GN-A266-06 9 34611258 34611258 G A RPP25L Silent p.L12L 0.25 TCGA-GN-A266-06 9 34618712 34618712 A C DCTN3 Missense_Mutation p.S48A 0.31 tolerated(1) benign(0.002) TCGA-GN-A266-06 9 34709522 34709522 C T CCL21 Missense_Mutation p.G116R 0.42 tolerated(0.34) benign(0.092) TCGA-GN-A266-06 9 35680762 35680762 C T CA9 Missense_Mutation p.A417V 0.17 deleterious(0) probably_damaging(0.977) TCGA-GN-A266-06 9 35710878 35710878 G A TLN1 Silent p.V1373V 0.29 TCGA-GN-A266-06 9 35792814 35792814 C T NPR2 Missense_Mutation p.R137C 0.09 tolerated(0.05) possibly_damaging(0.892) TCGA-GN-A266-06 9 36108051 36108051 T C RECK Missense_Mutation p.V552A 0.18 tolerated(0.88) benign(0.001) TCGA-GN-A266-06 9 37126523 37126523 C T ZCCHC7 Missense_Mutation p.S65L 0.23 tolerated(0.66) benign(0.002) TCGA-GN-A266-06 9 37515999 37515999 G A FBXO10 Silent p.I866I 0.45 TCGA-GN-A266-06 9 37692689 37692689 A C FRMPD1 Silent p.I17I 0.28 TCGA-GN-A266-06 9 37745262 37745262 C T FRMPD1 Missense_Mutation p.P1078L 0.20 tolerated_low_confidence(0.19) benign(0.008) TCGA-GN-A266-06 9 38395964 38395964 G A ALDH1B1 Silent p.R73R 0.33 TCGA-GN-A266-06 9 38414197 38414197 G A IGFBPL1 Missense_Mutation p.P155L 0.18 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 9 3898643 3898643 G T GLIS3 Intron 0.22 TCGA-GN-A266-06 9 39085669 39085669 G A CNTNAP3 Intron 0.29 TCGA-GN-A266-06 9 39103800 39103800 G A CNTNAP3 Missense_Mutation p.S826F 0.21 tolerated(0.53) benign(0.33) TCGA-GN-A266-06 9 39109260 39109260 G A CNTNAP3 Silent p.S754S 0.18 TCGA-GN-A266-06 9 40704191 40704191 G A SPATA31A3 Silent p.R616R 0.19 TCGA-GN-A266-06 9 40716146 40716146 C T FAM74A3 RNA 0.11 TCGA-GN-A266-06 9 4118013 4118013 C T GLIS3 Missense_Mutation p.D489N 0.44 deleterious(0.04) benign(0.052) TCGA-GN-A266-06 9 4118600 4118600 G A GLIS3 Missense_Mutation p.S293F 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-GN-A266-06 9 43625417 43625417 T C SPATA31A6 Silent p.Q1090Q 0.32 TCGA-GN-A266-06 9 43626641 43626641 C T SPATA31A6 Missense_Mutation p.M682I 0.32 tolerated(0.38) benign(0.002) TCGA-GN-A266-06 9 43627854 43627854 G A SPATA31A6 Missense_Mutation p.S278F 0.40 deleterious(0) probably_damaging(0.994) TCGA-GN-A266-06 9 4566058 4566058 C T SLC1A1 Missense_Mutation p.P151L 0.13 deleterious(0) probably_damaging(0.964) TCGA-GN-A266-06 9 5361791 5361791 A T PLGRKT Missense_Mutation p.F60Y 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A266-06 9 6252872 6252872 C T IL33 Missense_Mutation p.S117L 0.24 tolerated(0.21) benign(0.004) TCGA-GN-A266-06 9 69127060 69127060 C T PGM5P2 RNA 0.26 TCGA-GN-A266-06 9 71002416 71002416 C T PGM5 Silent p.L203L 0.40 TCGA-GN-A266-06 9 71152396 71152396 G A TMEM252 Missense_Mutation p.P98S 0.49 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 9 71628844 71628844 G A PRKACG Silent p.F55F 0.16 TCGA-GN-A266-06 9 71842716 71842716 C T TJP2 Missense_Mutation p.P447S 0.29 tolerated(0.1) probably_damaging(1) TCGA-GN-A266-06 9 71845108 71845108 C G TJP2 Missense_Mutation p.A575G 0.35 deleterious(0) probably_damaging(0.997) TCGA-GN-A266-06 9 72833384 72833384 G A MAMDC2 Missense_Mutation p.G595S 0.28 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 9 72930412 72930412 C T SMC5 Missense_Mutation p.P575L 0.19 tolerated(0.11) benign(0.049) TCGA-GN-A266-06 9 73151591 73151591 C T TRPM3 Missense_Mutation p.D1468N 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.592) TCGA-GN-A266-06 9 74345064 74345064 G A TMEM2 Missense_Mutation p.P627S 0.46 tolerated(0.29) benign(0.168) TCGA-GN-A266-06 9 77257730 77257730 C T RORB Silent p.I212I 0.38 TCGA-GN-A266-06 9 77390969 77390969 G A TRPM6 Missense_Mutation p.S1078F 0.14 deleterious(0) possibly_damaging(0.714) TCGA-GN-A266-06 9 77417047 77417047 T A TRPM6 Missense_Mutation p.E592D 0.32 tolerated(0.42) benign(0.005) TCGA-GN-A266-06 9 77425749 77425749 G A TRPM6 Silent p.L493L 0.37 TCGA-GN-A266-06 9 78848402 78848402 C T PCSK5 Missense_Mutation p.S919L 0.25 tolerated(1) benign(0) TCGA-GN-A266-06 9 78936388 78936388 G A PCSK5 Missense_Mutation p.R1285K 0.32 tolerated(0.96) benign(0.001) TCGA-GN-A266-06 9 79267532 79267532 G A PRUNE2 Silent p.I2808I 0.16 TCGA-GN-A266-06 9 79318599 79318599 G A PRUNE2 Missense_Mutation p.P2644S 0.29 tolerated(0.57) benign(0.052) TCGA-GN-A266-06 9 79320738 79320738 C T PRUNE2 Missense_Mutation p.R2151Q 0.34 tolerated(1) benign(0.001) TCGA-GN-A266-06 9 79325752 79325752 C T PRUNE2 Missense_Mutation p.E480K 0.35 deleterious(0) probably_damaging(0.998) TCGA-GN-A266-06 9 79325895 79325895 G A PRUNE2 Missense_Mutation p.T432I 0.14 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 9 79520949 79520949 G A PRUNE2 5'UTR 0.35 TCGA-GN-A266-06 9 79853224 79853224 C T VPS13A Missense_Mutation p.P608S 0.29 deleterious(0.03) possibly_damaging(0.766) TCGA-GN-A266-06 9 80038879 80038879 G A GNA14 3'UTR 0.20 TCGA-GN-A266-06 9 8317819 8317819 G A PTPRD 3'UTR 0.21 TCGA-GN-A266-06 9 8331682 8331682 C T PTPRD Missense_Mutation p.G1812R 0.16 deleterious(0.04) probably_damaging(1) TCGA-GN-A266-06 9 8341167 8341167 G A PTPRD Silent p.S1683S 0.20 TCGA-GN-A266-06 9 84226687 84226687 G A TLE1 Silent p.P417P 0.25 TCGA-GN-A266-06 9 84608517 84608517 C T SPATA31D1 Silent p.P1044P 0.28 TCGA-GN-A266-06 9 8492952 8492952 C T PTPRD Missense_Mutation p.E793K 0.19 tolerated(0.08) benign(0.13) TCGA-GN-A266-06 9 8500885 8500885 G A PTPRD Missense_Mutation p.P666L 0.16 tolerated(0.17) benign(0) TCGA-GN-A266-06 9 8517893 8517893 C T PTPRD Missense_Mutation p.D500N 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A266-06 9 85613319 85613319 C T RASEF Missense_Mutation p.R589Q 0.21 tolerated(0.48) benign(0.002) TCGA-GN-A266-06 9 86284156 86284156 G A UBQLN1 Missense_Mutation p.P398S 0.31 deleterious(0.03) possibly_damaging(0.702) TCGA-GN-A266-06 9 86356932 86356932 G A GKAP1 Missense_Mutation p.H330Y 0.23 tolerated(0.05) probably_damaging(0.962) TCGA-GN-A266-06 9 86403586 86403586 G A GKAP1 Missense_Mutation p.S123F 0.35 deleterious(0) possibly_damaging(0.681) TCGA-GN-A266-06 9 87339142 87339142 G A NTRK2 Missense_Mutation p.E242K 0.44 tolerated(0.76) possibly_damaging(0.557) TCGA-GN-A266-06 9 90388119 90388119 G A CTSL3P RNA 0.24 TCGA-GN-A266-06 9 90499516 90499516 C T SPATA31E1 Silent p.I125I 0.12 TCGA-GN-A266-06 9 90502188 90502188 G A SPATA31E1 Missense_Mutation p.G929E 0.33 tolerated(1) benign(0) TCGA-GN-A266-06 9 90584230 90584230 G A CDK20 Missense_Mutation p.S241F 0.21 deleterious(0) possibly_damaging(0.863) TCGA-GN-A266-06 9 91262491 91262491 C T RP13-60M5.2 RNA 0.11 TCGA-GN-A266-06 9 91977310 91977310 C T SECISBP2 3'Flank 0.33 TCGA-GN-A266-06 9 93375783 93375783 C T DIRAS2 Silent p.G109G 0.13 TCGA-GN-A266-06 9 94172655 94172655 G A NFIL3 Missense_Mutation p.S121L 0.26 tolerated(0.08) benign(0.008) TCGA-GN-A266-06 9 94486388 94486388 G A ROR2 Silent p.F796F 0.28 TCGA-GN-A266-06 9 94486579 94486579 G A ROR2 Missense_Mutation p.P733S 0.45 tolerated(0.06) possibly_damaging(0.643) TCGA-GN-A266-06 9 95050131 95050137 ATCCCCA TGCCCC IARS Frame_Shift_Del p.M111Rfs*14 0.33 TCGA-GN-A266-06 9 95609097 95609097 G A ZNF484 Missense_Mutation p.H660Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-GN-A266-06 9 990474 990474 G A DMRT3 Silent p.E296E 0.38 TCGA-GN-A266-06 9 990650 990650 C T DMRT3 Missense_Mutation p.A355V 0.46 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-GN-A266-06 9 99286000 99286000 A T CDC14B Silent p.L318L 0.17 TCGA-GN-A266-06 9 99580357 99580357 G A ZNF782 Nonsense_Mutation p.Q650* 0.34 TCGA-GN-A266-06 9 99799623 99799623 C T CTSV Missense_Mutation p.G103R 0.36 tolerated(0.13) benign(0.138) TCGA-GN-A266-06 X 101620197 101620197 C T NXF2B Missense_Mutation p.D417N 0.39 tolerated(0.17) benign(0.044) TCGA-GN-A266-06 X 102192851 102192851 C T RAB40AL Missense_Mutation p.S202F 0.72 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 X 103349360 103349360 G A SLC25A53 Missense_Mutation p.S194F 0.75 deleterious(0) probably_damaging(0.992) TCGA-GN-A266-06 X 105011151 105011151 G A IL1RAPL2 Missense_Mutation p.E520K 0.72 tolerated(0.32) probably_damaging(1) TCGA-GN-A266-06 X 105011256 105011256 G A IL1RAPL2 Missense_Mutation p.E555K 0.64 deleterious(0.05) probably_damaging(0.994) TCGA-GN-A266-06 X 105280677 105280677 C T SERPINA7 Missense_Mutation p.E125K 0.74 tolerated(0.08) possibly_damaging(0.51) TCGA-GN-A266-06 X 106016214 106016214 G A RNF128 Missense_Mutation p.G186S 0.76 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 X 106171926 106171926 G A CLDN2 Missense_Mutation p.M156I 0.68 tolerated(0.08) possibly_damaging(0.685) TCGA-GN-A266-06 X 106788969 106788969 C T FRMPD3 Silent p.S133S 0.82 TCGA-GN-A266-06 X 106789011 106789011 G A FRMPD3 Silent p.L147L 0.83 TCGA-GN-A266-06 X 107431790 107431790 C T COL4A6 Missense_Mutation p.G516E 0.67 probably_damaging(0.999) TCGA-GN-A266-06 X 107438346 107438346 C T COL4A6 Missense_Mutation p.G306D 0.68 unknown(0) TCGA-GN-A266-06 X 107438355 107438355 C T COL4A6 Missense_Mutation p.G303D 0.69 unknown(0) TCGA-GN-A266-06 X 107840644 107840644 G A COL4A5 Missense_Mutation p.G542E 0.63 unknown(0) TCGA-GN-A266-06 X 108697044 108697044 G A GUCY2F Silent p.I359I 0.42 TCGA-GN-A266-06 X 109922606 109922606 C T CHRDL1 Missense_Mutation p.E402K 0.24 tolerated(0.35) benign(0.004) TCGA-GN-A266-06 X 111090643 111090643 C T TRPC5 Missense_Mutation p.E467K 0.35 tolerated(0.15) benign(0.034) TCGA-GN-A266-06 X 111090644 111090644 C T TRPC5 Silent p.R466R 0.37 TCGA-GN-A266-06 X 111697971 111697971 G A ZCCHC16 Silent p.T5T 0.60 TCGA-GN-A266-06 X 111698178 111698178 C T ZCCHC16 Silent p.F74F 0.70 TCGA-GN-A266-06 X 113949746 113949746 C T HTR2C Intron 0.56 TCGA-GN-A266-06 X 115589994 115589994 G A SLC6A14 Missense_Mutation p.R601K 0.67 tolerated(0.66) benign(0.001) TCGA-GN-A266-06 X 117043960 117043960 G A KLHL13 Missense_Mutation p.P227S 0.71 tolerated(1) benign(0.007) TCGA-GN-A266-06 X 117718740 117718740 G A DOCK11 Silent p.G546G 0.67 TCGA-GN-A266-06 X 117788864 117788864 C T DOCK11 Intron 0.62 TCGA-GN-A266-06 X 117960038 117960038 G A ZCCHC12 Silent p.V277V 0.51 TCGA-GN-A266-06 X 118221678 118221678 G A KIAA1210 Missense_Mutation p.S1172L 0.54 tolerated(0.25) benign(0.121) TCGA-GN-A266-06 X 118725046 118725046 A G NKRF Silent p.Y129Y 0.65 TCGA-GN-A266-06 X 119068457 119068457 G A NKAP Missense_Mutation p.S246L 0.78 tolerated(0.18) unknown(0) TCGA-GN-A266-06 X 119674287 119674287 G A CUL4B Missense_Mutation p.A543V 0.28 tolerated(0.14) benign(0.12) TCGA-GN-A266-06 X 122459987 122459987 G A GRIA3 Missense_Mutation p.E207K 0.75 tolerated(0.11) benign(0.184) TCGA-GN-A266-06 X 122551295 122551295 C T GRIA3 Missense_Mutation p.R515C 0.57 deleterious(0) probably_damaging(0.943) TCGA-GN-A266-06 X 122561843 122561843 C T GRIA3 Silent p.I643I 0.65 TCGA-GN-A266-06 X 123654524 123654524 C T TENM1 Silent p.T1048T 0.74 TCGA-GN-A266-06 X 12632949 12632949 A T FRMPD4 Missense_Mutation p.N124I 0.73 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 X 127184994 127184994 C T ACTRT1 3'UTR 0.60 TCGA-GN-A266-06 X 12905587 12905587 G A TLR7 Missense_Mutation p.E654K 0.63 tolerated(0.41) benign(0.013) TCGA-GN-A266-06 X 129189886 129189886 G A BCORL1 Silent p.R1637R 0.66 TCGA-GN-A266-06 X 129543258 129543258 C T RBMX2 Silent p.L67L 0.29 TCGA-GN-A266-06 X 130222867 130222867 G A ARHGAP36 3'UTR 0.40 TCGA-GN-A266-06 X 130415215 130415215 C T IGSF1 Nonsense_Mutation p.W541* 0.69 TCGA-GN-A266-06 X 130415673 130415673 G A IGSF1 Missense_Mutation p.R498C 0.56 deleterious(0.03) benign(0.008) TCGA-GN-A266-06 X 130678425 130678425 C T OR13H1 Silent p.I126I 0.74 TCGA-GN-A266-06 X 131197485 131197485 G A MST4 Missense_Mutation p.E100K 0.54 deleterious(0) possibly_damaging(0.855) TCGA-GN-A266-06 X 131762506 131762506 C T HS6ST2 Silent p.L561L 0.67 TCGA-GN-A266-06 X 132159894 132159894 C T USP26 Silent p.R785R 0.54 TCGA-GN-A266-06 X 132730510 132730510 C T GPC3 Missense_Mutation p.D534N 0.62 tolerated(0.25) benign(0.2) TCGA-GN-A266-06 X 134856813 134856813 G A CT45A1 3'UTR 0.04 TCGA-GN-A266-06 X 134990652 134990652 C T SAGE1 Silent p.H439H 0.67 TCGA-GN-A266-06 X 134993485 134993485 G A SAGE1 Missense_Mutation p.D714N 0.77 deleterious(0.02) possibly_damaging(0.881) TCGA-GN-A266-06 X 135428876 135428876 C T GPR112 Missense_Mutation p.S1004F 0.68 tolerated(0.06) possibly_damaging(0.687) TCGA-GN-A266-06 X 135618372 135618372 G A VGLL1 Missense_Mutation p.E65K 0.72 tolerated(0.1) benign(0.075) TCGA-GN-A266-06 X 136112662 136112662 C T GPR101 Missense_Mutation p.R391K 0.53 tolerated(0.62) benign(0.038) TCGA-GN-A266-06 X 136112786 136112786 C T GPR101 Missense_Mutation p.E350K 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.809) TCGA-GN-A266-06 X 138684654 138684654 C T MCF2 Missense_Mutation p.D659N 0.69 tolerated(0.07) benign(0.02) TCGA-GN-A266-06 X 138684655 138684655 C T MCF2 Silent p.K658K 0.70 TCGA-GN-A266-06 X 138729051 138729051 T C MCF2 Missense_Mutation p.K13E 0.53 tolerated(0.24) possibly_damaging(0.669) TCGA-GN-A266-06 X 139038210 139038210 G A CXorf66 Missense_Mutation p.R311C 0.47 deleterious(0.05) benign(0.193) TCGA-GN-A266-06 X 139040376 139040376 C T CXorf66 Missense_Mutation p.G30E 0.62 tolerated(0.13) benign(0.001) TCGA-GN-A266-06 X 139866204 139866204 C T CDR1 Missense_Mutation p.D110N 0.76 tolerated(0.17) possibly_damaging(0.728) TCGA-GN-A266-06 X 140984478 140984478 G A MAGEC3 Intron 0.63 TCGA-GN-A266-06 X 140984593 140984593 C T MAGEC3 Intron 0.83 TCGA-GN-A266-06 X 140995039 140995039 C T MAGEC1 Nonsense_Mutation p.Q617* 0.26 TCGA-GN-A266-06 X 141290979 141290979 G A MAGEC2 Silent p.F265F 0.76 TCGA-GN-A266-06 X 141290982 141290982 G A MAGEC2 Silent p.H264H 0.78 TCGA-GN-A266-06 X 141291223 141291223 C T MAGEC2 Missense_Mutation p.R184K 0.65 tolerated(1) benign(0.003) TCGA-GN-A266-06 X 142716674 142716674 G A SLITRK4 Missense_Mutation p.P751S 0.25 tolerated(0.11) probably_damaging(0.996) TCGA-GN-A266-06 X 142716900 142716900 G A SLITRK4 Silent p.T675T 0.69 TCGA-GN-A266-06 X 142717743 142717743 T G SLITRK4 Silent p.V394V 0.67 TCGA-GN-A266-06 X 142795419 142795419 C T SPANXN2 Missense_Mutation p.E87K 0.60 tolerated(0.36) benign(0.32) TCGA-GN-A266-06 X 142795459 142795459 G A SPANXN2 Silent p.S73S 0.62 TCGA-GN-A266-06 X 1428348 1428348 C T CSF2RA Silent p.V427V 0.54 TCGA-GN-A266-06 X 147743594 147743594 C T AFF2 Missense_Mutation p.P116S 0.64 tolerated(0.18) benign(0.007) TCGA-GN-A266-06 X 148037391 148037391 G A AFF2 Missense_Mutation p.E606K 0.70 tolerated(0.08) probably_damaging(0.995) TCGA-GN-A266-06 X 148072755 148072755 C T AFF2 Silent p.L1277L 0.69 TCGA-GN-A266-06 X 148798242 148798242 G A MAGEA11 Missense_Mutation p.E366K 0.60 deleterious(0.03) possibly_damaging(0.677) TCGA-GN-A266-06 X 150348464 150348464 G A GPR50 Missense_Mutation p.E137K 0.67 tolerated(0.36) benign(0.01) TCGA-GN-A266-06 X 150349680 150349680 C T GPR50 Missense_Mutation p.S542F 0.74 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-GN-A266-06 X 151092726 151092726 T A MAGEA4 Missense_Mutation p.F197Y 0.19 deleterious(0) benign(0.366) TCGA-GN-A266-06 X 151818227 151818227 C T GABRQ Silent p.I211I 0.56 TCGA-GN-A266-06 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.77 TCGA-GN-A266-06 X 151935935 151935935 G A MAGEA3 Missense_Mutation p.P78S 0.56 deleterious(0.04) benign(0.026) TCGA-GN-A266-06 X 152482329 152482329 C T MAGEA1 Missense_Mutation p.E228K 0.68 tolerated(0.79) probably_damaging(0.913) TCGA-GN-A266-06 X 152482399 152482399 C T MAGEA1 Missense_Mutation p.M204I 0.66 tolerated(0.2) benign(0.002) TCGA-GN-A266-06 X 152713190 152713190 G A HAUS7 3'UTR 0.69 TCGA-GN-A266-06 X 152825335 152825335 T A ATP2B3 Missense_Mutation p.M925K 0.62 deleterious(0) possibly_damaging(0.85) TCGA-GN-A266-06 X 153052286 153052286 G A IDH3G Silent p.N298N 0.61 TCGA-GN-A266-06 X 15311353 15311353 G A ASB11 Silent p.F153F 0.42 TCGA-GN-A266-06 X 153222475 153222475 G A HCFC1 Missense_Mutation p.T797I 0.66 deleterious(0.05) probably_damaging(0.993) TCGA-GN-A266-06 X 153490621 153490621 C T OPN1MW2 Silent p.F119F 0.40 TCGA-GN-A266-06 X 153556195 153556195 C T TKTL1 Silent p.I503I 0.65 TCGA-GN-A266-06 X 153581488 153581488 G A FLNA Missense_Mutation p.P2036L 0.71 deleterious(0.01) benign(0.002) TCGA-GN-A266-06 X 153582370 153582370 G A FLNA Missense_Mutation p.H1867Y 0.67 tolerated(0.46) benign(0.081) TCGA-GN-A266-06 X 153594969 153594969 G A FLNA Silent p.F342F 0.56 TCGA-GN-A266-06 X 154115665 154115665 C T F8A1 Missense_Mutation p.S339L 0.34 tolerated(0.38) benign(0.198) TCGA-GN-A266-06 X 154159406 154159406 C T F8 Missense_Mutation p.A887T 0.56 tolerated(0.59) benign(0.002) TCGA-GN-A266-06 X 155004454 155004454 G A SPRY3 3'UTR 0.67 TCGA-GN-A266-06 X 17153397 17153397 C T REPS2 Missense_Mutation p.S559F 0.34 tolerated(0.14) benign(0.024) TCGA-GN-A266-06 X 17167038 17167038 A T REPS2 3'UTR 0.69 TCGA-GN-A266-06 X 18192217 18192217 A T BEND2 Missense_Mutation p.S638R 0.35 tolerated(0.19) benign(0.093) TCGA-GN-A266-06 X 18192218 18192218 C T BEND2 Missense_Mutation p.S638N 0.34 tolerated(0.21) benign(0.093) TCGA-GN-A266-06 X 18221903 18221903 G A BEND2 Missense_Mutation p.P209S 0.59 deleterious(0) probably_damaging(0.999) TCGA-GN-A266-06 X 19482366 19482366 G A MAP3K15 Silent p.F228F 0.74 TCGA-GN-A266-06 X 22292062 22292062 G A ZNF645 Silent p.T318T 0.78 TCGA-GN-A266-06 X 23697366 23697366 C A PRDX4 Missense_Mutation p.D187E 0.58 deleterious(0.02) possibly_damaging(0.844) TCGA-GN-A266-06 X 26157210 26157210 G A MAGEB18 Silent p.E36E 0.33 TCGA-GN-A266-06 X 26157816 26157816 G A MAGEB18 Silent p.G238G 0.56 TCGA-GN-A266-06 X 26212379 26212379 C T MAGEB6 Missense_Mutation p.S139F 0.20 tolerated(0.16) probably_damaging(0.979) TCGA-GN-A266-06 X 26213001 26213001 G A MAGEB6 Silent p.Q346Q 0.63 TCGA-GN-A266-06 X 27998043 27998043 G A DCAF8L1 Missense_Mutation p.S470F 0.56 deleterious(0.04) benign(0.243) TCGA-GN-A266-06 X 27999286 27999286 C T DCAF8L1 Missense_Mutation p.D56N 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.77) TCGA-GN-A266-06 X 2827940 2827940 G C ARSD Missense_Mutation p.R406G 0.32 tolerated(0.19) benign(0.124) TCGA-GN-A266-06 X 3002534 3002535 - TTTT ARSF Frame_Shift_Ins p.S221Ffs*42 0.52 TCGA-GN-A266-06 X 30236800 30236800 G A MAGEB2 Missense_Mutation p.E35K 0.70 tolerated(0.29) benign(0.007) TCGA-GN-A266-06 X 3235908 3235908 C T MXRA5 Silent p.R1938R 0.76 TCGA-GN-A266-06 X 3238430 3238430 G A MXRA5 Missense_Mutation p.P1766S 0.59 tolerated(0.06) possibly_damaging(0.545) TCGA-GN-A266-06 X 3240208 3240208 G A MXRA5 Missense_Mutation p.T1173I 0.62 tolerated(0.07) benign(0.071) TCGA-GN-A266-06 X 3240982 3240982 G A MXRA5 Missense_Mutation p.S915F 0.69 tolerated(0.05) benign(0.017) TCGA-GN-A266-06 X 34149069 34149069 C T FAM47A Missense_Mutation p.D443N 0.71 tolerated(0.15) benign(0.146) TCGA-GN-A266-06 X 34149783 34149783 C T FAM47A Missense_Mutation p.E205K 0.67 tolerated(0.48) benign(0.001) TCGA-GN-A266-06 X 34962818 34962818 C T FAM47B Missense_Mutation p.P624S 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-GN-A266-06 X 35820805 35820805 G A MAGEB16 Missense_Mutation p.M164I 0.35 tolerated(0.56) benign(0.076) TCGA-GN-A266-06 X 35944275 35944275 C T CXorf22 Missense_Mutation p.P131S 0.67 deleterious(0.02) probably_damaging(0.988) TCGA-GN-A266-06 X 36090074 36090074 G A CHDC2 Missense_Mutation p.G59E 0.48 tolerated(0.53) benign(0.012) TCGA-GN-A266-06 X 37027036 37027036 G A FAM47C Missense_Mutation p.E185K 0.75 tolerated(0.13) possibly_damaging(0.755) TCGA-GN-A266-06 X 37027273 37027273 G A FAM47C Missense_Mutation p.E264K 0.70 tolerated(0.87) benign(0) TCGA-GN-A266-06 X 48046237 48046237 C T SSX5 3'UTR 0.77 TCGA-GN-A266-06 X 49081361 49081361 G A CACNA1F Missense_Mutation p.S591F 0.50 deleterious(0.01) probably_damaging(0.909) TCGA-GN-A266-06 X 49598451 49598451 G A PAGE4 Missense_Mutation p.D99N 0.64 deleterious(0.01) probably_damaging(0.97) TCGA-GN-A266-06 X 50052150 50052150 C T CCNB3 Silent p.F327F 0.71 TCGA-GN-A266-06 X 50119069 50119069 T C DGKK RNA 0.50 TCGA-GN-A266-06 X 50129459 50129459 G A DGKK RNA 0.73 TCGA-GN-A266-06 X 50376915 50376915 C T SHROOM4 Missense_Mutation p.G720R 0.42 deleterious(0.04) benign(0.068) TCGA-GN-A266-06 X 52842166 52842166 G A XAGE5 Silent p.E25E 0.86 TCGA-GN-A266-06 X 55650865 55650865 C T FOXR2 Missense_Mutation p.H241Y 0.78 deleterious(0.02) benign(0.012) TCGA-GN-A266-06 X 57337090 57337090 G A FAAH2 Missense_Mutation p.E114K 0.59 tolerated(0.05) benign(0.068) TCGA-GN-A266-06 X 63444921 63444921 C T ASB12 Missense_Mutation p.G204R 0.71 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 X 63555965 63555965 G A MTMR8 Missense_Mutation p.S382F 0.64 deleterious(0) possibly_damaging(0.594) TCGA-GN-A266-06 X 6451765 6451765 G C VCX3A 3'UTR 0.72 TCGA-GN-A266-06 X 64718908 64718908 G A ZC3H12B Missense_Mutation p.E260K 0.61 tolerated(0.18) probably_damaging(0.988) TCGA-GN-A266-06 X 65390523 65390523 G A HEPH Nonsense_Mutation p.W91* 0.59 TCGA-GN-A266-06 X 68749608 68749608 C T FAM155B Missense_Mutation p.R410C 0.68 deleterious(0.04) benign(0.406) TCGA-GN-A266-06 X 69871302 69871302 C T TEX11 Missense_Mutation p.R509K 0.47 tolerated(1) possibly_damaging(0.581) TCGA-GN-A266-06 X 71426010 71426010 A T ERCC6L Silent p.L869L 0.29 TCGA-GN-A266-06 X 71843002 71843002 C A PHKA1 Silent p.L639L 0.59 TCGA-GN-A266-06 X 73040921 73040921 C A XIST RNA 0.54 TCGA-GN-A266-06 X 73045926 73045926 C T XIST RNA 0.66 TCGA-GN-A266-06 X 73524631 73524631 C T ZCCHC13 3'UTR 0.81 TCGA-GN-A266-06 X 73524632 73524632 C T ZCCHC13 3'UTR 0.80 TCGA-GN-A266-06 X 73960521 73960521 G A KIAA2022 Missense_Mutation p.P1291S 0.75 tolerated(0.95) benign(0.004) TCGA-GN-A266-06 X 73961966 73961966 A C KIAA2022 Missense_Mutation p.V809G 0.70 deleterious(0) probably_damaging(0.986) TCGA-GN-A266-06 X 73962340 73962340 G A KIAA2022 Silent p.S684S 0.76 TCGA-GN-A266-06 X 73962509 73962509 C T KIAA2022 Missense_Mutation p.R628Q 0.57 deleterious(0) probably_damaging(1) TCGA-GN-A266-06 X 73963780 73963780 G A KIAA2022 Silent p.L204L 0.62 TCGA-GN-A266-06 X 76952146 76952146 G A ATRX Missense_Mutation p.P97S 0.65 benign(0.034) TCGA-GN-A266-06 X 77528719 77528719 C T CYSLTR1 Silent p.E175E 0.50 TCGA-GN-A266-06 X 78010384 78010384 C T LPAR4 Silent p.F6F 0.42 TCGA-GN-A266-06 X 78011171 78011171 C T LPAR4 Missense_Mutation p.L269F 0.52 tolerated(0.07) probably_damaging(0.914) TCGA-GN-A266-06 X 7811740 7811740 G A VCX Missense_Mutation p.D102N 0.54 deleterious(0.01) unknown(0) TCGA-GN-A266-06 X 79698902 79698902 C T FAM46D Silent p.F288F 0.70 TCGA-GN-A266-06 X 83129566 83129566 C T CYLC1 Missense_Mutation p.P617L 0.60 tolerated(0.11) benign(0.331) TCGA-GN-A266-06 X 83319290 83319290 G A RPS6KA6 Silent p.L745L 0.73 TCGA-GN-A266-06 X 83320119 83320119 C T RPS6KA6 Missense_Mutation p.D658N 0.62 deleterious(0.02) benign(0.042) TCGA-GN-A266-06 X 83400549 83400549 C T RPS6KA6 Silent p.G146G 0.58 TCGA-GN-A266-06 X 85403980 85403980 C T DACH2 Missense_Mutation p.S119F 0.52 deleterious(0) possibly_damaging(0.652) TCGA-GN-A266-06 X 86887277 86887277 C T KLHL4 Silent p.G464G 0.68 TCGA-GN-A266-06 X 86887278 86887278 C T KLHL4 Missense_Mutation p.R465C 0.68 deleterious(0) probably_damaging(0.987) TCGA-GN-A266-06 X 91090671 91090671 C T PCDH11X Silent p.S56S 0.30 TCGA-GN-A266-06 X 92926783 92926783 T C NAP1L3 Silent p.%3D 0.71 TCGA-GN-A266-06 X 92927223 92927223 G A NAP1L3 Missense_Mutation p.H361Y 0.78 tolerated(0.23) benign(0) TCGA-GN-A266-06 X 99661934 99661934 G A PCDH19 Silent p.L554L 0.64 TCGA-GN-A266-06 X 99917354 99917354 C T SRPX2 Silent p.A115A 0.69 TCGA-GN-A266-06 X 99924355 99924355 C T SRPX2 Silent p.I402I 0.36 TCGA-GN-A267-06 10 101643929 101643929 G A DNMBP Missense_Mutation p.S1279F 0.35 deleterious(0.01) benign(0.021) TCGA-GN-A267-06 10 101646372 101646372 C T DNMBP Silent p.R1101R 0.43 TCGA-GN-A267-06 10 102107992 102107992 C T SCD Missense_Mutation p.P67S 0.34 tolerated(0.09) possibly_damaging(0.839) TCGA-GN-A267-06 10 102107993 102107993 C T SCD Missense_Mutation p.P67L 0.34 tolerated(0.13) probably_damaging(0.955) TCGA-GN-A267-06 10 102249076 102249076 G A SEC31B Missense_Mutation p.P1035L 0.49 deleterious(0.04) benign(0.008) TCGA-GN-A267-06 10 102249077 102249077 G A SEC31B Missense_Mutation p.P1035S 0.48 tolerated(0.34) benign(0.014) TCGA-GN-A267-06 10 103871231 103871231 G A LDB1 Missense_Mutation p.P30S 0.47 tolerated_low_confidence(0.18) probably_damaging(0.968) TCGA-GN-A267-06 10 114192019 114192019 G A ZDHHC6 Missense_Mutation p.L373F 0.31 tolerated(0.32) benign(0.012) TCGA-GN-A267-06 10 11505127 11505127 G A USP6NL Silent p.S617S 0.52 TCGA-GN-A267-06 10 116251619 116251619 G A ABLIM1 Missense_Mutation p.H305Y 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 10 116251620 116251620 G A ABLIM1 Silent p.Y304Y 0.38 TCGA-GN-A267-06 10 124399828 124399828 G A DMBT1 Silent p.V2276V 0.45 TCGA-GN-A267-06 10 31784735 31784735 C T ZEB1 Missense_Mutation p.P97L 0.60 deleterious(0.04) probably_damaging(0.999) TCGA-GN-A267-06 10 33217122 33217122 C A ITGB1 Missense_Mutation p.M149I 0.68 deleterious(0) benign(0.256) TCGA-GN-A267-06 10 48413677 48413677 T A GDF2 Missense_Mutation p.K397N 0.56 deleterious(0) probably_damaging(0.945) TCGA-GN-A267-06 10 50122129 50122129 G A LRRC18 Silent p.I24I 0.52 TCGA-GN-A267-06 10 50948822 50948822 G A OGDHL Missense_Mutation p.H692Y 0.60 tolerated(0.06) benign(0.03) TCGA-GN-A267-06 10 63188782 63188782 G A TMEM26 Silent p.I169I 0.70 TCGA-GN-A267-06 10 79163678 79163678 G A KCNMA1 Missense_Mutation p.S161F 0.57 tolerated(0.05) probably_damaging(0.956) TCGA-GN-A267-06 10 79762037 79762037 G A POLR3A Silent p.I759I 0.88 TCGA-GN-A267-06 10 88417915 88417915 G A OPN4 Silent p.G150G 0.59 TCGA-GN-A267-06 10 94700496 94700496 C T EXOC6 Missense_Mutation p.P409S 0.56 tolerated(0.42) benign(0.001) TCGA-GN-A267-06 10 96534887 96534887 G A CYP2C19 Missense_Mutation p.E81K 0.46 tolerated(0.23) benign(0.1) TCGA-GN-A267-06 10 97446807 97446807 G A TCTN3 Silent p.V282V 0.44 TCGA-GN-A267-06 10 98816191 98816191 G A SLIT1 Silent p.I396I 0.27 TCGA-GN-A267-06 11 118944080 118944080 C A VPS11 Missense_Mutation p.Q352K 0.08 tolerated(0.32) benign(0.311) TCGA-GN-A267-06 11 119145646 119145646 C T CBL Silent p.F284F 0.58 TCGA-GN-A267-06 11 120348898 120348898 C T ARHGEF12 Missense_Mutation p.S1189L 0.48 tolerated_low_confidence(0.24) benign(0.004) TCGA-GN-A267-06 11 123676656 123676656 C T OR6M1 Missense_Mutation p.M134I 0.49 deleterious(0.01) benign(0.162) TCGA-GN-A267-06 11 123753892 123753892 A - TMEM225 Frame_Shift_Del p.S211Pfs*2 0.34 TCGA-GN-A267-06 11 126136502 126136502 G A SRPR Missense_Mutation p.P237S 0.64 tolerated(0.07) benign(0.345) TCGA-GN-A267-06 11 1955641 1955641 C T TNNT3 Missense_Mutation p.S149F 0.53 deleterious(0) probably_damaging(0.968) TCGA-GN-A267-06 11 48510449 48510449 G A OR4A47 Silent p.L35L 0.78 TCGA-GN-A267-06 11 49168447 49168447 A - FOLH1 Frame_Shift_Del p.F705Sfs*24 0.28 TCGA-GN-A267-06 11 5009434 5009434 G A MMP26 5'UTR 0.52 TCGA-GN-A267-06 11 56184908 56184908 G A OR5R1 Silent p.S267S 0.55 TCGA-GN-A267-06 11 58034453 58034453 C T OR10W1 Missense_Mutation p.G293E 0.55 tolerated(0.35) benign(0.004) TCGA-GN-A267-06 11 58170372 58170372 C T OR5B3 Missense_Mutation p.E171K 0.59 deleterious_low_confidence(0.01) benign(0.014) TCGA-GN-A267-06 11 60565890 60565890 C T MS4A10 Missense_Mutation p.P209S 0.57 deleterious(0.03) possibly_damaging(0.857) TCGA-GN-A267-06 11 60565891 60565891 C T MS4A10 Missense_Mutation p.P209L 0.58 deleterious(0.04) probably_damaging(0.949) TCGA-GN-A267-06 11 61113332 61113332 G A DAK Missense_Mutation p.D497N 0.44 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 11 612695 612695 G A IRF7 Missense_Mutation p.L501F 0.66 deleterious(0) probably_damaging(0.991) TCGA-GN-A267-06 11 618706 618706 C T CDHR5 Missense_Mutation p.G618E 0.47 tolerated(0.2) possibly_damaging(0.806) TCGA-GN-A267-06 11 64677517 64677517 G A ATG2A Silent p.L620L 0.70 TCGA-GN-A267-06 11 64677518 64677518 G A ATG2A Silent p.G619G 0.70 TCGA-GN-A267-06 11 86123489 86123489 G A CCDC81 Missense_Mutation p.E427K 0.51 deleterious(0.05) possibly_damaging(0.856) TCGA-GN-A267-06 12 109306311 109306311 C T SVOP Silent p.%3D 0.57 TCGA-GN-A267-06 12 109876414 109876414 G A MYO1H Silent p.R745R 0.56 TCGA-GN-A267-06 12 113552632 113552632 G A RASAL1 Missense_Mutation p.P385L 0.59 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 12 113554893 113554893 G T RASAL1 Missense_Mutation p.A239D 0.60 tolerated(0.33) benign(0.029) TCGA-GN-A267-06 12 123519098 123519098 C T PITPNM2 Missense_Mutation p.V14M 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 12 124232228 124232228 C T ATP6V0A2 Silent p.I560I 0.58 TCGA-GN-A267-06 12 13906733 13906733 G A GRIN2B Silent p.F176F 0.37 TCGA-GN-A267-06 12 15656912 15656912 G A PTPRO Silent p.G392G 0.32 TCGA-GN-A267-06 12 18658387 18658387 G A PIK3C2G Silent p.G1064G 0.29 TCGA-GN-A267-06 12 18715647 18715647 G A PIK3C2G Missense_Mutation p.E1160K 0.45 deleterious(0.02) possibly_damaging(0.899) TCGA-GN-A267-06 12 21174514 21174514 G A SLCO1B7 Missense_Mutation p.R113K 0.31 tolerated(1) benign(0.001) TCGA-GN-A267-06 12 266807 266807 A G IQSEC3 Missense_Mutation p.N797S 0.29 tolerated(0.14) probably_damaging(0.973) TCGA-GN-A267-06 12 28116382 28116382 C T PTHLH Silent p.R141R 0.30 TCGA-GN-A267-06 12 39698727 39698727 C T KIF21A Missense_Mutation p.G1486R 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 12 46591600 46591600 C T SLC38A1 Missense_Mutation p.G422E 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 12 46591601 46591601 C T SLC38A1 Splice_Site p.X422_splice 0.27 TCGA-GN-A267-06 12 49745140 49745140 A T DNAJC22 Missense_Mutation p.H294L 0.33 tolerated(0.19) benign(0.345) TCGA-GN-A267-06 12 52908823 52908823 C T KRT5 Missense_Mutation p.R559Q 0.32 tolerated(0.51) unknown(0) TCGA-GN-A267-06 12 52939362 52939362 G A KRT71 Silent p.S449S 0.33 TCGA-GN-A267-06 12 53721980 53721980 C T SP7 Missense_Mutation p.E416K 0.28 tolerated_low_confidence(0.05) benign(0.045) TCGA-GN-A267-06 12 55945190 55945190 C T OR6C4 Silent p.F60F 0.37 TCGA-GN-A267-06 12 56565503 56565503 G A SMARCC2 Silent p.V684V 0.37 TCGA-GN-A267-06 12 58114788 58114788 A T OS9 3'UTR 0.35 TCGA-GN-A267-06 12 58114789 58114789 A T OS9 3'UTR 0.38 TCGA-GN-A267-06 12 662524 662524 C T B4GALNT3 Silent p.L479L 0.35 TCGA-GN-A267-06 12 6637364 6637364 C T NCAPD2 Missense_Mutation p.R1057C 0.38 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 12 67699385 67699385 C T CAND1 Missense_Mutation p.P646L 0.38 tolerated(0.12) benign(0.15) TCGA-GN-A267-06 12 96282255 96282255 G A CCDC38 Missense_Mutation p.P301S 0.57 tolerated(0.77) benign(0.001) TCGA-GN-A267-06 13 36046603 36046603 C T NBEA Missense_Mutation p.S2172F 0.80 deleterious(0) probably_damaging(0.991) TCGA-GN-A267-06 13 36046604 36046604 C T NBEA Silent p.S2172S 0.80 TCGA-GN-A267-06 13 42891698 42891698 G A AKAP11 Silent p.T1813T 0.81 TCGA-GN-A267-06 13 48955550 48955550 C T RB1 Nonsense_Mutation p.R556* 0.75 TCGA-GN-A267-06 13 52686462 52686462 C T NEK5 Missense_Mutation p.G85E 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 13 52744146 52744146 T G MRPS31P5 RNA 0.33 TCGA-GN-A267-06 14 101004526 101004526 C T BEGAIN Missense_Mutation p.G521E 0.75 tolerated(0.26) benign(0.144) TCGA-GN-A267-06 14 101004527 101004527 C T BEGAIN Missense_Mutation p.G521R 0.79 tolerated(0.22) benign(0.009) TCGA-GN-A267-06 14 102829213 102829213 G A CINP 5'Flank 0.75 TCGA-GN-A267-06 14 21795941 21795941 A G RPGRIP1 Missense_Mutation p.E957G 0.65 deleterious(0) benign(0.282) TCGA-GN-A267-06 14 22090560 22090560 G A TRAV1-1 Missense_Mutation p.D56N 0.63 tolerated(0.3) benign(0.005) TCGA-GN-A267-06 14 22192035 22192035 C T TRAV3 5'UTR 0.47 TCGA-GN-A267-06 14 22237058 22237058 G A TRAV6 Silent p.Q45Q 0.76 TCGA-GN-A267-06 14 22392573 22392573 C T TRAV14DV4 Silent p.F32F 0.70 TCGA-GN-A267-06 14 79181167 79181167 G A NRXN3 Missense_Mutation p.E204K 0.66 tolerated(0.13) probably_damaging(0.968) TCGA-GN-A267-06 15 28369256 28369256 G A HERC2 Missense_Mutation p.S4372L 0.59 benign(0.018) TCGA-GN-A267-06 15 30925751 30925751 C T ARHGAP11B Missense_Mutation p.R87W 0.51 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 15 32928921 32928921 G A ARHGAP11A Silent p.L649L 0.61 TCGA-GN-A267-06 15 34546687 34546687 A T SLC12A6 Missense_Mutation p.V327D 0.55 deleterious(0.01) benign(0.139) TCGA-GN-A267-06 15 37184583 37184583 G A MEIS2 Missense_Mutation p.P409S 0.60 tolerated_low_confidence(0.25) benign(0.001) TCGA-GN-A267-06 15 45433531 45433531 C T DUOX1 Missense_Mutation p.T536I 0.47 deleterious(0) benign(0.283) TCGA-GN-A267-06 15 45433532 45433532 C A DUOX1 Silent p.T536T 0.47 TCGA-GN-A267-06 15 53908292 53908292 G A WDR72 Missense_Mutation p.S704F 0.71 deleterious(0.02) possibly_damaging(0.897) TCGA-GN-A267-06 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.70 deleterious_low_confidence(0) benign(0.44) TCGA-GN-A267-06 15 55790596 55790596 G A DYX1C1 5'UTR 0.78 TCGA-GN-A267-06 15 55790597 55790597 G A DYX1C1 5'UTR 0.78 TCGA-GN-A267-06 15 57810601 57810601 G A CGNL1 Missense_Mutation p.R874Q 0.41 tolerated(0.9) benign(0.003) TCGA-GN-A267-06 15 65688237 65688237 G A IGDCC4 Missense_Mutation p.A421V 0.68 tolerated(0.41) benign(0.008) TCGA-GN-A267-06 15 67473595 67473595 C G SMAD3 Silent p.T225T 0.15 TCGA-GN-A267-06 15 81173276 81173276 G A KIAA1199 Missense_Mutation p.G139D 0.74 deleterious(0) probably_damaging(0.956) TCGA-GN-A267-06 15 83527871 83527871 C T HOMER2 Missense_Mutation p.G146E 0.72 deleterious(0.01) probably_damaging(1) TCGA-GN-A267-06 15 83527872 83527872 C T HOMER2 Missense_Mutation p.G146R 0.73 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 16 15831308 15831308 G A MYH11 Silent p.A1104A 0.44 TCGA-GN-A267-06 16 20566663 20566663 G A ACSM2B Missense_Mutation p.P175L 0.40 deleterious(0) probably_damaging(0.994) TCGA-GN-A267-06 16 20970652 20970652 C T DNAH3 Missense_Mutation p.G3559S 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 16 20974801 20974801 C T DNAH3 Missense_Mutation p.G3469R 0.50 tolerated(0.25) benign(0.141) TCGA-GN-A267-06 16 21042384 21042384 G A DNAH3 Silent p.L1808L 0.38 TCGA-GN-A267-06 16 21063133 21063133 G A DNAH3 Nonsense_Mutation p.Q1366* 0.45 TCGA-GN-A267-06 16 2161314 2161314 C T PKD1 Missense_Mutation p.R1285Q 0.45 benign(0.003) TCGA-GN-A267-06 16 239275 239275 G A LUC7L Silent p.P346P 0.19 TCGA-GN-A267-06 16 239276 239276 G A LUC7L Missense_Mutation p.P346L 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A267-06 16 25186276 25186276 C T LCMT1 Silent p.F301F 0.59 TCGA-GN-A267-06 16 3405891 3405891 C T OR2C1 5'UTR 0.54 TCGA-GN-A267-06 16 48587558 48587558 A G N4BP1 Missense_Mutation p.S638P 0.91 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 16 58622709 58622709 G A CNOT1 Silent p.F68F 0.56 TCGA-GN-A267-06 16 67208605 67208605 G A NOL3 Missense_Mutation p.G123S 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-GN-A267-06 16 7629881 7629881 C T RBFOX1 Missense_Mutation p.P145S 0.31 deleterious(0) probably_damaging(0.942) TCGA-GN-A267-06 16 81303860 81303860 G A BCMO1 Missense_Mutation p.E314K 0.63 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A267-06 16 84691408 84691408 C T KLHL36 Missense_Mutation p.P332L 0.52 deleterious(0.01) possibly_damaging(0.71) TCGA-GN-A267-06 16 89345485 89345485 G A ANKRD11 Missense_Mutation p.P2489S 0.30 benign(0.176) TCGA-GN-A267-06 17 10355767 10355767 G A MYH4 Missense_Mutation p.A1105V 0.31 tolerated(0.76) benign(0.154) TCGA-GN-A267-06 17 10401153 10401153 C T MYH1 Silent p.T1421T 0.32 TCGA-GN-A267-06 17 10428264 10428264 C T MYH2 Missense_Mutation p.R1594K 0.32 tolerated(0.21) possibly_damaging(0.868) TCGA-GN-A267-06 17 11593556 11593556 G A DNAH9 Missense_Mutation p.E1473K 0.31 probably_damaging(0.997) TCGA-GN-A267-06 17 16612207 16612207 G A CCDC144A Nonsense_Mutation p.W279* 0.16 TCGA-GN-A267-06 17 17719921 17719921 G A SREBF1 Missense_Mutation p.R663C 0.64 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 17 17719922 17719922 G A SREBF1 Silent p.I662I 0.64 TCGA-GN-A267-06 17 27903339 27903339 G A GIT1 Missense_Mutation p.R513C 0.22 tolerated(0.06) benign(0.007) TCGA-GN-A267-06 17 29161414 29161414 C T ATAD5 Silent p.F105F 0.20 TCGA-GN-A267-06 17 34072033 34072033 G A GAS2L2 Missense_Mutation p.S828F 0.41 tolerated(0.54) benign(0.003) TCGA-GN-A267-06 17 34235721 34235721 C T AC015849.16 RNA 0.38 TCGA-GN-A267-06 17 37026441 37026441 C T LASP1 5'UTR 0.14 TCGA-GN-A267-06 17 37026442 37026442 C T LASP1 5'UTR 0.14 TCGA-GN-A267-06 17 37883074 37883074 G A ERBB2 Missense_Mutation p.D993N 0.17 deleterious(0.04) benign(0.095) TCGA-GN-A267-06 17 37899515 37899515 G A GRB7 Silent p.R205R 0.23 TCGA-GN-A267-06 17 39646003 39646003 C T KRT36 Silent p.R38R 0.30 TCGA-GN-A267-06 17 39646004 39646004 C T KRT36 Missense_Mutation p.R38K 0.31 tolerated(0.47) benign(0.002) TCGA-GN-A267-06 17 39777916 39777916 C T KRT17 Missense_Mutation p.E255K 0.34 tolerated(0.06) benign(0.066) TCGA-GN-A267-06 17 40152539 40152539 C T DNAJC7 Missense_Mutation p.D43N 0.30 tolerated(0.79) benign(0.01) TCGA-GN-A267-06 17 41003363 41003363 G A AOC3 Translation_Start_Site p.M1? 0.23 deleterious(0) benign(0.107) TCGA-GN-A267-06 17 45412682 45412682 T A EFCAB13 Missense_Mutation p.S51T 0.28 tolerated(0.08) benign(0.357) TCGA-GN-A267-06 17 45925190 45925190 C T SP6 Silent p.L202L 0.48 TCGA-GN-A267-06 17 56233094 56233094 C T OR4D1 Missense_Mutation p.L194F 0.39 tolerated(0.08) benign(0.05) TCGA-GN-A267-06 17 58282845 58282845 G A USP32 Missense_Mutation p.P1071L 0.21 deleterious(0.01) benign(0.084) TCGA-GN-A267-06 17 58282846 58282846 G T USP32 Missense_Mutation p.P1071T 0.24 tolerated(0.1) benign(0.003) TCGA-GN-A267-06 17 6903691 6903691 G A ALOX12 Missense_Mutation p.D282N 0.20 deleterious(0.01) benign(0.149) TCGA-GN-A267-06 17 70119866 70119866 G A SOX9 Missense_Mutation p.D290N 0.27 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 17 726978 726978 G A NXN Missense_Mutation p.P169L 0.43 tolerated(0.07) benign(0.052) TCGA-GN-A267-06 17 74004389 74004389 G A EVPL Nonsense_Mutation p.Q1633* 0.27 TCGA-GN-A267-06 17 74004390 74004390 G A EVPL Silent p.A1632A 0.28 TCGA-GN-A267-06 17 74288492 74288492 G A QRICH2 Silent p.V606V 0.45 TCGA-GN-A267-06 17 74328483 74328483 G A PRPSAP1 Silent p.I108I 0.23 TCGA-GN-A267-06 17 76446802 76446802 C T DNAH17 Missense_Mutation p.E3607K 0.57 probably_damaging(0.925) TCGA-GN-A267-06 17 78797174 78797174 C T RPTOR Intron 0.38 TCGA-GN-A267-06 17 80545020 80545020 C T FOXK2 Missense_Mutation p.P553L 0.48 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-GN-A267-06 18 21735699 21735699 G A CABYR Silent p.K78K 0.39 TCGA-GN-A267-06 18 33689427 33689427 A T SLC39A6 3'UTR 0.42 TCGA-GN-A267-06 18 52262285 52262285 G A DYNAP Missense_Mutation p.G84E 0.27 tolerated(0.06) probably_damaging(0.988) TCGA-GN-A267-06 18 5410589 5410589 G A EPB41L3 Silent p.A699A 0.44 TCGA-GN-A267-06 18 54291641 54291641 G A TXNL1 Nonsense_Mutation p.R83* 0.33 TCGA-GN-A267-06 18 61326656 61326656 C T SERPINB3 Missense_Mutation p.E110K 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A267-06 18 61387373 61387373 C T SERPINB11 Missense_Mutation p.P201L 0.42 tolerated(0.14) possibly_damaging(0.687) TCGA-GN-A267-06 18 67563239 67563239 G A CD226 Missense_Mutation p.S142L 0.51 tolerated(0.06) benign(0.298) TCGA-GN-A267-06 18 76752273 76752273 C T SALL3 Silent p.F94F 0.39 TCGA-GN-A267-06 18 76754898 76754898 G A SALL3 Silent p.R969R 0.48 TCGA-GN-A267-06 18 77170938 77170938 T C NFATC1 Silent p.F208F 0.52 TCGA-GN-A267-06 18 77170939 77170939 C T NFATC1 Missense_Mutation p.P209S 0.54 deleterious(0.01) benign(0.04) TCGA-GN-A267-06 18 9524620 9524620 T A RALBP1 Missense_Mutation p.F361Y 0.19 deleterious(0) benign(0.251) TCGA-GN-A267-06 19 10395189 10395214 CCAGCCCAGCCACTGGGCCCGAGGGC - ICAM1 Frame_Shift_Del p.Q348Pfs*96 0.30 TCGA-GN-A267-06 19 1063641 1063641 C T ABCA7 Silent p.A1937A 0.26 TCGA-GN-A267-06 19 11486628 11486628 C T SWSAP1 Missense_Mutation p.P209L 0.44 tolerated(0.17) benign(0.013) TCGA-GN-A267-06 19 11489124 11489124 G A EPOR Silent p.L355L 0.37 TCGA-GN-A267-06 19 11489125 11489125 G A EPOR Silent p.P354P 0.38 TCGA-GN-A267-06 19 13386717 13386717 C T CACNA1A Nonsense_Mutation p.W1312* 0.33 TCGA-GN-A267-06 19 13386718 13386718 C T CACNA1A Nonsense_Mutation p.W1312* 0.32 TCGA-GN-A267-06 19 1785585 1785585 G C ATP8B3 Silent p.V1092V 0.24 TCGA-GN-A267-06 19 2233871 2233873 CCT - PLEKHJ1 In_Frame_Del p.E139del 0.36 TCGA-GN-A267-06 19 3009582 3009582 G A TLE2 Silent p.S377S 0.39 TCGA-GN-A267-06 19 31039935 31039935 G A ZNF536 Missense_Mutation p.G1137R 0.51 tolerated_low_confidence(0.51) benign(0.136) TCGA-GN-A267-06 19 32971433 32971433 C T DPY19L3 Silent p.L653L 0.40 TCGA-GN-A267-06 19 32971434 32971434 C T DPY19L3 Missense_Mutation p.R654W 0.40 deleterious(0) probably_damaging(0.978) TCGA-GN-A267-06 19 35616179 35616179 G A LGI4 Missense_Mutation p.A511V 0.34 tolerated(0.06) benign(0.005) TCGA-GN-A267-06 19 37644195 37644195 G A ZNF585A Silent p.F147F 0.31 TCGA-GN-A267-06 19 39924333 39924333 C T RPS16 Silent p.K73K 0.45 TCGA-GN-A267-06 19 40408565 40408565 T A FCGBP Missense_Mutation p.D1425V 0.32 possibly_damaging(0.885) TCGA-GN-A267-06 19 40408566 40408566 C T FCGBP Missense_Mutation p.D1425N 0.31 benign(0.079) TCGA-GN-A267-06 19 40408578 40408578 C T FCGBP Missense_Mutation p.E1421K 0.33 probably_damaging(0.926) TCGA-GN-A267-06 19 43262198 43262198 G T PSG8 Missense_Mutation p.P222Q 0.31 deleterious(0.02) benign(0.2) TCGA-GN-A267-06 19 45563722 45563722 C T CLASRP Silent p.Y262Y 0.33 TCGA-GN-A267-06 19 47354122 47354122 C T AP2S1 5'UTR 0.40 TCGA-GN-A267-06 19 48556297 48556297 C T PLA2G4C Missense_Mutation p.E523K 0.25 tolerated(0.91) benign(0.016) TCGA-GN-A267-06 19 51298160 51298160 G A ACPT Silent p.P368P 0.15 TCGA-GN-A267-06 19 51770743 51770743 G A SIGLECL1 Missense_Mutation p.G176E 0.31 tolerated(1) benign(0.017) TCGA-GN-A267-06 19 51919961 51919961 T C SIGLEC10 Missense_Mutation p.K222R 0.41 tolerated(0.33) benign(0.008) TCGA-GN-A267-06 19 53770596 53770596 G A VN1R4 Missense_Mutation p.T108M 0.25 tolerated(0.27) possibly_damaging(0.63) TCGA-GN-A267-06 19 53770597 53770597 T G VN1R4 Missense_Mutation p.T108P 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-GN-A267-06 19 54663912 54663912 G A TMC4 3'UTR 0.37 TCGA-GN-A267-06 19 55143159 55143159 A G LILRB1 Silent p.A93A 0.31 TCGA-GN-A267-06 19 55331421 55331421 C T KIR3DL1 Silent p.P203P 0.23 TCGA-GN-A267-06 19 55399609 55399609 G C FCAR Missense_Mutation p.R199S 0.23 tolerated(0.87) benign(0.002) TCGA-GN-A267-06 19 55420724 55420724 G A NCR1 Missense_Mutation p.G159E 0.45 tolerated(0.06) benign(0.21) TCGA-GN-A267-06 19 55741823 55741823 G A PPP6R1 3'UTR 0.25 TCGA-GN-A267-06 19 56244576 56244576 C T NLRP9 Silent p.P207P 0.38 TCGA-GN-A267-06 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.33 deleterious(0) probably_damaging(0.993) TCGA-GN-A267-06 19 57133976 57133976 G A ZNF71 Missense_Mutation p.G441S 0.24 tolerated(0.34) benign(0.003) TCGA-GN-A267-06 19 57133977 57133977 G A ZNF71 Missense_Mutation p.G441D 0.24 tolerated(0.49) benign(0.195) TCGA-GN-A267-06 19 57176307 57176307 C T ZNF835 Missense_Mutation p.G87E 0.30 tolerated(0.68) benign(0.037) TCGA-GN-A267-06 19 58578848 58578848 G A ZNF135 Silent p.G356G 0.33 TCGA-GN-A267-06 19 58989497 58989497 C T ZNF446 Silent p.N192N 0.33 TCGA-GN-A267-06 19 59081864 59081864 G A MZF1 Silent p.L143L 0.35 TCGA-GN-A267-06 19 59081865 59081865 G A MZF1 Silent p.V142V 0.33 TCGA-GN-A267-06 19 6452419 6452419 G A SLC25A23 Silent p.I325I 0.20 TCGA-GN-A267-06 19 6990804 6990804 C T EMR4P RNA 0.27 TCGA-GN-A267-06 19 9059329 9059329 G A MUC16 Missense_Mutation p.P9373S 0.35 unknown(0) TCGA-GN-A267-06 19 9090179 9090179 C T MUC16 Missense_Mutation p.E546K 0.39 unknown(0) TCGA-GN-A267-06 19 9204840 9204840 G A OR1M1 Missense_Mutation p.R307K 0.44 tolerated(0.44) benign(0.003) TCGA-GN-A267-06 19 9362583 9362583 G A OR7E24 Silent p.K288K 0.28 TCGA-GN-A267-06 1 101186071 101186071 A C VCAM1 Missense_Mutation p.Y35S 0.39 tolerated(0.05) benign(0.003) TCGA-GN-A267-06 1 11017747 11017747 C A C1orf127 Nonsense_Mutation p.G207* 0.34 TCGA-GN-A267-06 1 115123994 115123994 C T BCAS2 Missense_Mutation p.E38K 0.40 tolerated(0.09) benign(0.032) TCGA-GN-A267-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.37 deleterious(0.01) benign(0.045) TCGA-GN-A267-06 1 1153003 1153003 G A SDF4 Silent p.A326A 0.33 TCGA-GN-A267-06 1 116666948 116666948 G A MAB21L3 Missense_Mutation p.E151K 0.47 tolerated(0.08) possibly_damaging(0.9) TCGA-GN-A267-06 1 117064556 117064556 A T CD58 Silent p.I226I 0.37 TCGA-GN-A267-06 1 117064557 117064557 A T CD58 Missense_Mutation p.I226N 0.37 deleterious(0) possibly_damaging(0.595) TCGA-GN-A267-06 1 12337829 12337829 C T VPS13D Missense_Mutation p.P1395L 0.43 benign(0.125) TCGA-GN-A267-06 1 150429863 150429863 C T RPRD2 Missense_Mutation p.P324S 0.46 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GN-A267-06 1 151238481 151238481 C T PSMD4 Missense_Mutation p.A219V 0.41 deleterious(0.02) possibly_damaging(0.59) TCGA-GN-A267-06 1 151238482 151238482 C T PSMD4 Silent p.A219A 0.42 TCGA-GN-A267-06 1 152192103 152192103 C T HRNR Missense_Mutation p.D668N 0.54 unknown(0) TCGA-GN-A267-06 1 152975753 152975753 C T SPRR3 Missense_Mutation p.P86L 0.14 deleterious(0.03) benign(0.429) TCGA-GN-A267-06 1 153283152 153283152 G A PGLYRP3 5'UTR 0.33 TCGA-GN-A267-06 1 156622810 156622810 C T BCAN Intron 0.36 TCGA-GN-A267-06 1 160769848 160769848 G A LY9 Missense_Mutation p.E144K 0.27 tolerated(0.38) benign(0.109) TCGA-GN-A267-06 1 161816269 161816269 C T ATF6 Silent p.N406N 0.43 TCGA-GN-A267-06 1 16935249 16935249 C T NBPF1 5'UTR 0.17 TCGA-GN-A267-06 1 169702093 169702093 C T SELE Silent p.T28T 0.21 TCGA-GN-A267-06 1 173628247 173628247 T C ANKRD45 Missense_Mutation p.N104S 0.16 deleterious(0.05) probably_damaging(0.965) TCGA-GN-A267-06 1 175365882 175365882 C T TNR Nonsense_Mutation p.W346* 0.45 TCGA-GN-A267-06 1 177898948 177898948 G A SEC16B 3'UTR 0.23 TCGA-GN-A267-06 1 177899741 177899741 A C SEC16B Missense_Mutation p.L1017R 0.46 deleterious(0.04) probably_damaging(0.955) TCGA-GN-A267-06 1 179820351 179820351 G A TOR1AIP2 Missense_Mutation p.P61L 0.18 deleterious_low_confidence(0.03) benign(0.037) TCGA-GN-A267-06 1 179820352 179820352 G A TOR1AIP2 Missense_Mutation p.P61S 0.17 tolerated_low_confidence(0.26) benign(0.038) TCGA-GN-A267-06 1 1849693 1849693 G A TMEM52 Silent p.T116T 0.26 TCGA-GN-A267-06 1 193038627 193038627 T C TROVE2 Missense_Mutation p.L148P 0.23 deleterious(0.01) probably_damaging(1) TCGA-GN-A267-06 1 193038629 193038629 C T TROVE2 Missense_Mutation p.R149W 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 1 196274467 196274467 G A KCNT2 Missense_Mutation p.S831F 0.43 deleterious(0) probably_damaging(0.931) TCGA-GN-A267-06 1 201379534 201379534 C T TNNI1 Silent p.R162R 0.28 TCGA-GN-A267-06 1 202731857 202731857 G A KDM5B Silent p.P296P 0.16 TCGA-GN-A267-06 1 202731858 202731858 G A KDM5B Missense_Mutation p.P296L 0.16 tolerated(0.54) benign(0.118) TCGA-GN-A267-06 1 204501329 204501329 G A MDM4 Missense_Mutation p.D100N 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-GN-A267-06 1 20517436 20517436 G A UBXN10 Missense_Mutation p.E128K 0.42 tolerated(0.11) benign(0.013) TCGA-GN-A267-06 1 205890930 205890930 G A SLC26A9 Missense_Mutation p.P607S 0.30 tolerated(0.14) benign(0.147) TCGA-GN-A267-06 1 209961987 209961987 G A IRF6 Silent p.V394V 0.54 TCGA-GN-A267-06 1 226822293 226822293 A G ITPKB 3'UTR 0.64 TCGA-GN-A267-06 1 227239624 227239624 C T CDC42BPA Intron 0.19 TCGA-GN-A267-06 1 227239625 227239625 C T CDC42BPA Intron 0.18 TCGA-GN-A267-06 1 2283203 2283203 C T MORN1 Intron 0.31 TCGA-GN-A267-06 1 2283205 2283205 T C MORN1 Intron 0.29 TCGA-GN-A267-06 1 230415267 230415267 T A GALNT2 3'UTR 0.48 TCGA-GN-A267-06 1 231361123 231361123 T G C1orf131 Intron 0.30 TCGA-GN-A267-06 1 233507856 233507856 C T MLK4 Missense_Mutation p.S542F 0.32 tolerated(0.05) benign(0.043) TCGA-GN-A267-06 1 236748364 236748364 C T HEATR1 Silent p.Q734Q 0.38 TCGA-GN-A267-06 1 24020315 24020315 C T RPL11 Missense_Mutation p.S59F 0.28 deleterious(0.01) possibly_damaging(0.766) TCGA-GN-A267-06 1 2436369 2436369 C T PLCH2 3'UTR 0.44 TCGA-GN-A267-06 1 24419474 24419474 G A MYOM3 Silent p.F351F 0.41 TCGA-GN-A267-06 1 24454650 24454650 G A IL22RA1 Silent p.C217C 0.33 TCGA-GN-A267-06 1 245018278 245018278 C T HNRNPU Silent p.Q807Q 0.09 TCGA-GN-A267-06 1 247079503 247079503 G A AHCTF1 Missense_Mutation p.L115F 0.29 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 1 247769173 247769173 G A OR2G3 Missense_Mutation p.G96S 0.26 deleterious(0) possibly_damaging(0.725) TCGA-GN-A267-06 1 248458490 248458490 G A OR2T12 Missense_Mutation p.P131S 0.36 tolerated(0.17) benign(0.049) TCGA-GN-A267-06 1 248512748 248512748 C T OR14C36 Silent p.L224L 0.20 TCGA-GN-A267-06 1 248813985 248813985 G A OR2T27 Silent p.S67S 0.28 TCGA-GN-A267-06 1 28905159 28905159 G A TRNAU1AP 3'Flank 0.31 TCGA-GN-A267-06 1 28905160 28905160 G A TRNAU1AP 3'Flank 0.31 TCGA-GN-A267-06 1 33998707 33998707 C T CSMD2 Missense_Mutation p.E3228K 0.38 tolerated(0.37) probably_damaging(0.937) TCGA-GN-A267-06 1 34037262 34037262 C T CSMD2 Silent p.E2611E 0.29 TCGA-GN-A267-06 1 34663513 34663513 G A C1orf94 Missense_Mutation p.M336I 0.41 tolerated(0.21) benign(0.004) TCGA-GN-A267-06 1 36297478 36297478 G A AGO4 Missense_Mutation p.M354I 0.38 deleterious(0.01) possibly_damaging(0.74) TCGA-GN-A267-06 1 40717248 40717248 G A TMCO2 Silent p.G177G 0.34 TCGA-GN-A267-06 1 47181973 47181973 G A EFCAB14 Nonsense_Mutation p.R110* 0.26 TCGA-GN-A267-06 1 6007208 6007208 G A NPHP4 Nonsense_Mutation p.Q359* 0.26 TCGA-GN-A267-06 1 6184071 6184071 C T CHD5 Missense_Mutation p.D1546N 0.30 tolerated(0.09) benign(0.001) TCGA-GN-A267-06 1 75608881 75608881 C T LHX8 Silent p.V156V 0.31 TCGA-GN-A267-06 1 78959094 78959094 C T PTGFR Silent p.I222I 0.34 TCGA-GN-A267-06 1 79470895 79470895 G A ELTD1 Missense_Mutation p.S11F 0.32 deleterious_low_confidence(0) benign(0.043) TCGA-GN-A267-06 1 89448449 89448472 CTTTCTACAGAAGGGGGAAGCCCT - RBMXL1 In_Frame_Del p.L348_G355del 0.28 TCGA-GN-A267-06 1 9011504 9011504 C T CA6 Intron 0.19 TCGA-GN-A267-06 20 13936761 13936761 T C SEL1L2 Silent p.E25E 0.44 TCGA-GN-A267-06 20 1460463 1460463 G A SIRPB2 Silent p.S111S 0.28 TCGA-GN-A267-06 20 24523668 24523668 C T SYNDIG1 5'UTR 0.43 TCGA-GN-A267-06 20 25277073 25277073 G A PYGB Missense_Mutation p.R816Q 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 20 3208916 3208916 C T SLC4A11 Missense_Mutation p.M892I 0.31 deleterious(0.03) benign(0.287) TCGA-GN-A267-06 20 334186 334186 C T NRSN2 Silent p.F174F 0.36 TCGA-GN-A267-06 20 3674141 3674141 G A SIGLEC1 Missense_Mutation p.P1154L 0.36 deleterious(0.03) possibly_damaging(0.642) TCGA-GN-A267-06 20 3674142 3674142 G A SIGLEC1 Missense_Mutation p.P1154S 0.36 tolerated(0.07) benign(0.219) TCGA-GN-A267-06 20 37154131 37154131 C T RALGAPB Silent p.L624L 0.32 TCGA-GN-A267-06 20 3766909 3766926 GTAGGGAGACAGCTTGTT - CENPB In_Frame_Del p.N69_Y74del 0.26 TCGA-GN-A267-06 20 40102057 40102057 G A CHD6 Silent p.L857L 0.29 TCGA-GN-A267-06 20 44180551 44180551 C T WFDC8 Intron 0.42 TCGA-GN-A267-06 20 44845504 44845504 C T CDH22 Missense_Mutation p.V267I 0.37 tolerated(0.14) benign(0.003) TCGA-GN-A267-06 20 45131707 45131707 C T ZNF334 Missense_Mutation p.E91K 0.33 tolerated(0.09) benign(0.002) TCGA-GN-A267-06 20 47782758 47782758 G A STAU1 5'UTR 0.31 TCGA-GN-A267-06 20 51872769 51872769 C T TSHZ2 Silent p.P924P 0.27 TCGA-GN-A267-06 20 52198478 52198478 G A ZNF217 Silent p.F296F 0.34 TCGA-GN-A267-06 20 5282887 5282887 G A PROKR2 Silent p.V318V 0.31 TCGA-GN-A267-06 20 55028076 55028076 C T CASS4 Missense_Mutation p.P615L 0.33 deleterious(0) possibly_damaging(0.816) TCGA-GN-A267-06 20 56138731 56138731 G A PCK1 Nonsense_Mutation p.W303* 0.37 TCGA-GN-A267-06 20 56140854 56140854 G A PCK1 Silent p.Q621Q 0.42 TCGA-GN-A267-06 20 56191474 56191474 C T ZBP1 Missense_Mutation p.V29M 0.34 tolerated(0.19) probably_damaging(0.961) TCGA-GN-A267-06 20 56191489 56191489 C T ZBP1 Missense_Mutation p.E24K 0.35 tolerated(0.23) benign(0.218) TCGA-GN-A267-06 20 57899635 57899635 G A EDN3 3'UTR 0.36 TCGA-GN-A267-06 20 60498611 60498611 G A CDH4 Missense_Mutation p.G493R 0.33 deleterious(0.05) benign(0.155) TCGA-GN-A267-06 20 60886750 60886750 C T LAMA5 Silent p.P3242P 0.46 TCGA-GN-A267-06 20 61460844 61460844 G A COL9A3 Missense_Mutation p.G349E 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 20 62838983 62838983 C T MYT1 Missense_Mutation p.P145L 0.29 benign(0.006) TCGA-GN-A267-06 20 8689378 8689378 C T PLCB1 Missense_Mutation p.S410L 0.25 deleterious(0) possibly_damaging(0.741) TCGA-GN-A267-06 21 37833622 37833622 G A CLDN14 Silent p.L124L 0.37 TCGA-GN-A267-06 21 38139568 38139568 C T HLCS Silent p.P490P 0.28 TCGA-GN-A267-06 21 40191545 40191545 C T ETS2 Silent p.S310S 0.28 TCGA-GN-A267-06 21 41711317 41711317 G T DSCAM Silent p.A412A 0.59 TCGA-GN-A267-06 21 43963547 43963547 A G SLC37A1 Missense_Mutation p.R189G 0.34 deleterious(0) possibly_damaging(0.889) TCGA-GN-A267-06 21 43963548 43963548 G A SLC37A1 Missense_Mutation p.R189K 0.33 deleterious(0.02) possibly_damaging(0.803) TCGA-GN-A267-06 21 44841138 44841138 G A SIK1 Silent p.P203P 0.31 TCGA-GN-A267-06 21 45390563 45390563 C T AGPAT3 Silent p.F180F 0.38 TCGA-GN-A267-06 21 47409526 47409526 G A COL6A1 Missense_Mutation p.R288K 0.28 tolerated(0.69) unknown(0) TCGA-GN-A267-06 21 47674388 47674388 G A MCM3AP Missense_Mutation p.P1352S 0.27 deleterious(0.02) benign(0.03) TCGA-GN-A267-06 21 47674389 47674389 G A MCM3AP Silent p.L1351L 0.27 TCGA-GN-A267-06 22 17601206 17601206 G A CECR6 Missense_Mutation p.A271V 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-GN-A267-06 22 19026318 19026318 G A DGCR2 3'UTR 0.50 TCGA-GN-A267-06 22 20302212 20302212 G A DGCR6L Missense_Mutation p.P217S 0.29 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-GN-A267-06 22 20457978 20457978 G A RIMBP3 Silent p.L1108L 0.14 TCGA-GN-A267-06 22 21363718 21363718 C G AC002472.1 5'Flank 0.33 TCGA-GN-A267-06 22 21998551 21998551 C T SDF2L1 3'UTR 0.40 TCGA-GN-A267-06 22 26702041 26702041 C T SEZ6L Missense_Mutation p.T482M 0.21 tolerated(0.06) benign(0.393) TCGA-GN-A267-06 22 26736577 26736577 G A SEZ6L Missense_Mutation p.G731R 0.24 deleterious(0) probably_damaging(0.978) TCGA-GN-A267-06 22 29727844 29727844 C T AP1B1 Missense_Mutation p.V791M 0.25 tolerated(0.18) possibly_damaging(0.46) TCGA-GN-A267-06 22 30123650 30123650 G A CABP7 Splice_Site p.X37_splice 0.25 TCGA-GN-A267-06 22 32804821 32804821 C T RTCB Splice_Site p.X32_splice 0.33 TCGA-GN-A267-06 22 35661316 35661316 C T HMGXB4 Missense_Mutation p.S312F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A267-06 22 37325823 37325823 C T CSF2RB Missense_Mutation p.P231L 0.24 tolerated(0.09) benign(0.081) TCGA-GN-A267-06 22 37465275 37465275 G A TMPRSS6 Missense_Mutation p.H660Y 0.20 tolerated(1) benign(0.002) TCGA-GN-A267-06 22 39815629 39815629 T G TAB1 Missense_Mutation p.L257R 0.29 tolerated(0.16) possibly_damaging(0.852) TCGA-GN-A267-06 22 51065636 51065636 C T ARSA Silent p.Q141Q 0.16 TCGA-GN-A267-06 2 102490688 102490688 C T MAP4K4 Missense_Mutation p.S927F 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A267-06 2 10918750 10918750 G A ATP6V1C2 Nonsense_Mutation p.W339* 0.49 TCGA-GN-A267-06 2 109388184 109388184 C T RANBP2 Missense_Mutation p.S2626F 0.49 tolerated(0.06) benign(0.044) TCGA-GN-A267-06 2 113819797 113819797 G A IL36RN Missense_Mutation p.G71E 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-GN-A267-06 2 113994297 113994297 C T PAX8 Missense_Mutation p.G260D 0.40 deleterious(0.04) benign(0.115) TCGA-GN-A267-06 2 113994298 113994298 C T PAX8 Missense_Mutation p.G260S 0.44 tolerated(0.05) benign(0.009) TCGA-GN-A267-06 2 11758601 11758601 C T GREB1 Silent p.P1200P 0.22 TCGA-GN-A267-06 2 121745856 121745856 C T GLI2 Missense_Mutation p.S789L 0.70 tolerated(0.71) benign(0.024) TCGA-GN-A267-06 2 127809905 127809905 C T BIN1 Missense_Mutation p.G433R 0.40 tolerated(0.57) benign(0.002) TCGA-GN-A267-06 2 128767934 128767934 G A SAP130 Missense_Mutation p.P286S 0.16 tolerated_low_confidence(0.77) benign(0.09) TCGA-GN-A267-06 2 128767935 128767935 G A SAP130 Silent p.I285I 0.16 TCGA-GN-A267-06 2 135911399 135911399 G C RAB3GAP1 Missense_Mutation p.A748P 0.07 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 2 141072609 141072609 C T LRP1B Missense_Mutation p.D4234N 0.58 possibly_damaging(0.539) TCGA-GN-A267-06 2 162751304 162751304 G A SLC4A10 Missense_Mutation p.R437Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-GN-A267-06 2 169783734 169783734 G A ABCB11 Missense_Mutation p.P1184S 0.20 tolerated(1) benign(0.006) TCGA-GN-A267-06 2 169788943 169788943 G A ABCB11 Nonsense_Mutation p.Q1053* 0.37 TCGA-GN-A267-06 2 170013888 170013888 G A LRP2 Silent p.S4004S 0.26 TCGA-GN-A267-06 2 17906555 17906555 C T SMC6 Missense_Mutation p.R232K 0.11 tolerated(1) benign(0.058) TCGA-GN-A267-06 2 179590745 179590745 A G TTN Silent p.P6768P 0.24 TCGA-GN-A267-06 2 179614852 179614852 G A TTN Intron 0.27 TCGA-GN-A267-06 2 179615439 179615439 A T TTN Intron 0.36 TCGA-GN-A267-06 2 179615440 179615440 G T TTN Intron 0.36 TCGA-GN-A267-06 2 185800994 185800994 G C ZNF804A Missense_Mutation p.V291L 0.30 tolerated(0.4) benign(0.011) TCGA-GN-A267-06 2 189932758 189932758 C T COL5A2 Missense_Mutation p.G462R 0.46 probably_damaging(0.999) TCGA-GN-A267-06 2 190618689 190618689 G A OSGEPL1 Silent p.L306L 0.40 TCGA-GN-A267-06 2 201460031 201460031 G A AOX1 Missense_Mutation p.G47E 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 2 201460032 201460032 A T AOX1 Silent p.G47G 0.16 TCGA-GN-A267-06 2 201464374 201464374 G A AOX1 Missense_Mutation p.C114Y 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 2 207024727 207024727 C T EEF1B2 Silent p.S8S 0.15 TCGA-GN-A267-06 2 207024728 207024728 C T EEF1B2 Missense_Mutation p.P9S 0.15 tolerated(0.37) benign(0.008) TCGA-GN-A267-06 2 21235191 21235191 C T APOB Missense_Mutation p.E1517K 0.22 probably_damaging(0.985) TCGA-GN-A267-06 2 218940382 218940382 G A RUFY4 Silent p.E409E 0.22 TCGA-GN-A267-06 2 219892939 219892939 A G CCDC108 Missense_Mutation p.L612P 0.34 deleterious(0) probably_damaging(0.937) TCGA-GN-A267-06 2 228476230 228476230 G A C2orf83 Silent p.S111S 0.24 TCGA-GN-A267-06 2 229890444 229890444 G A PID1 Silent p.F217F 0.48 TCGA-GN-A267-06 2 238628209 238628209 C T LRRFIP1 Missense_Mutation p.S66L 0.40 deleterious(0.01) possibly_damaging(0.612) TCGA-GN-A267-06 2 241657548 241657548 C T KIF1A Missense_Mutation p.G1751D 0.29 deleterious(0) probably_damaging(0.933) TCGA-GN-A267-06 2 242189270 242189270 G A HDLBP Missense_Mutation p.L500F 0.21 deleterious(0.03) possibly_damaging(0.771) TCGA-GN-A267-06 2 25057470 25057470 G A ADCY3 Silent p.D617D 0.50 TCGA-GN-A267-06 2 27886530 27886530 C T SLC4A1AP 5'UTR 0.24 TCGA-GN-A267-06 2 32640219 32640219 T G BIRC6 Silent p.S620S 0.20 TCGA-GN-A267-06 2 37234429 37234429 G A HEATR5B Missense_Mutation p.P1514L 0.23 tolerated(0.28) benign(0.021) TCGA-GN-A267-06 2 69053171 69053171 G A ARHGAP25 Missense_Mutation p.E596K 0.36 deleterious(0.01) possibly_damaging(0.864) TCGA-GN-A267-06 2 71043176 71043176 T C CLEC4F Missense_Mutation p.K446R 0.45 tolerated(0.25) benign(0.004) TCGA-GN-A267-06 2 71825792 71825792 G A DYSF Missense_Mutation p.E1225K 0.24 deleterious(0.01) possibly_damaging(0.674) TCGA-GN-A267-06 2 97526434 97526434 C T SEMA4C Missense_Mutation p.D811N 0.44 tolerated(0.25) possibly_damaging(0.678) TCGA-GN-A267-06 2 99651824 99651824 G A TSGA10 Nonsense_Mutation p.Q495* 0.12 TCGA-GN-A267-06 3 10384605 10384605 G A ATP2B2 Silent p.I916I 0.23 TCGA-GN-A267-06 3 108129629 108129629 G A MYH15 Silent p.A1452A 0.23 TCGA-GN-A267-06 3 108129630 108129630 G A MYH15 Missense_Mutation p.A1452V 0.25 deleterious(0.02) probably_damaging(0.936) TCGA-GN-A267-06 3 113186999 113186999 C T SPICE1 Missense_Mutation p.R381Q 0.25 deleterious(0.03) probably_damaging(0.945) TCGA-GN-A267-06 3 119462918 119462918 G A MAATS1 Missense_Mutation p.E593K 0.40 deleterious(0) probably_damaging(0.986) TCGA-GN-A267-06 3 121707144 121707144 G A ILDR1 3'UTR 0.27 TCGA-GN-A267-06 3 122645328 122645328 C T SEMA5B Silent p.P403P 0.30 TCGA-GN-A267-06 3 125725967 125725967 C T SLC41A3 Silent p.G452G 0.29 TCGA-GN-A267-06 3 130394152 130394152 G A COL6A6 Missense_Mutation p.D2235N 0.38 tolerated_low_confidence(0.19) benign(0.101) TCGA-GN-A267-06 3 133476668 133476668 G A TF Missense_Mutation p.G309E 0.31 tolerated(0.07) possibly_damaging(0.589) TCGA-GN-A267-06 3 134256013 134256013 C T CEP63 Missense_Mutation p.S153L 0.45 deleterious(0) probably_damaging(0.989) TCGA-GN-A267-06 3 160474483 160474483 G A PPM1L Silent p.G129G 0.26 TCGA-GN-A267-06 3 169485798 169485798 C T ACTRT3 Missense_Mutation p.G181S 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 3 169656312 169656312 G A SAMD7 3'UTR 0.53 TCGA-GN-A267-06 3 169656313 169656313 A C SAMD7 3'UTR 0.53 TCGA-GN-A267-06 3 18462335 18462335 C T SATB1 Missense_Mutation p.R42K 0.45 deleterious(0.03) benign(0.384) TCGA-GN-A267-06 3 186370148 186370148 G A FETUB Missense_Mutation p.D293N 0.29 tolerated(0.74) benign(0.003) TCGA-GN-A267-06 3 186954183 186954183 G A MASP1 Silent p.I492I 0.32 TCGA-GN-A267-06 3 189587173 189587173 A G TP63 Missense_Mutation p.D397G 0.10 deleterious(0) possibly_damaging(0.597) TCGA-GN-A267-06 3 193132506 193132506 G A ATP13A4 Missense_Mutation p.P959L 0.27 deleterious(0.01) possibly_damaging(0.798) TCGA-GN-A267-06 3 195491943 195491943 C T MUC4 Missense_Mutation p.G4617R 0.22 probably_damaging(0.995) TCGA-GN-A267-06 3 197616412 197616412 C T IQCG 3'UTR 0.26 TCGA-GN-A267-06 3 197616413 197616413 C T IQCG 3'UTR 0.26 TCGA-GN-A267-06 3 20136767 20136767 C T KAT2B Missense_Mutation p.S148F 0.21 deleterious(0) possibly_damaging(0.908) TCGA-GN-A267-06 3 2928759 2928759 G A CNTN4 Missense_Mutation p.G264E 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-GN-A267-06 3 30713741 30713741 C T TGFBR2 Missense_Mutation p.R381W 0.26 deleterious(0.01) benign(0.262) TCGA-GN-A267-06 3 32570044 32570044 C T DYNC1LI1 Silent p.L452L 0.24 TCGA-GN-A267-06 3 35725273 35725273 C T ARPP21 Missense_Mutation p.S76F 0.42 tolerated(0.27) possibly_damaging(0.575) TCGA-GN-A267-06 3 39185751 39185751 G A CSRNP1 Silent p.I219I 0.34 TCGA-GN-A267-06 3 39323131 39323131 G A CX3CR1 Missense_Mutation p.S19F 0.16 deleterious_low_confidence(0) benign(0.009) TCGA-GN-A267-06 3 47162123 47162123 G A SETD2 Missense_Mutation p.R1335C 0.28 deleterious(0) possibly_damaging(0.708) TCGA-GN-A267-06 3 49723120 49723120 G A MST1 Silent p.F432F 0.42 TCGA-GN-A267-06 3 53845206 53845206 G A CACNA1D Missense_Mutation p.E2107K 0.24 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-GN-A267-06 3 89259255 89259255 G A EPHA3 Silent p.V133V 0.30 TCGA-GN-A267-06 3 9743703 9743703 C T MTMR14 3'UTR 0.23 TCGA-GN-A267-06 4 100260761 100260761 C T ADH1C Missense_Mutation p.G359E 0.42 probably_damaging(0.98) TCGA-GN-A267-06 4 107845783 107845783 G A DKK2 Nonsense_Mutation p.R150* 0.31 TCGA-GN-A267-06 4 110791065 110791065 G A LRIT3 Nonsense_Mutation p.W387* 0.45 TCGA-GN-A267-06 4 123201052 123201052 C T KIAA1109 Missense_Mutation p.P2905L 0.17 possibly_damaging(0.511) TCGA-GN-A267-06 4 148545004 148545004 C T TMEM184C Missense_Mutation p.A48V 0.19 deleterious(0.03) benign(0.33) TCGA-GN-A267-06 4 148601580 148601580 C T PRMT10 Missense_Mutation p.D78N 0.30 deleterious(0.01) possibly_damaging(0.493) TCGA-GN-A267-06 4 153864191 153864191 C T FHDC1 5'UTR 0.34 TCGA-GN-A267-06 4 154557689 154557689 C T KIAA0922 Silent p.F1598F 0.30 TCGA-GN-A267-06 4 155525946 155525946 C T FGG 3'UTR 0.29 TCGA-GN-A267-06 4 156135355 156135355 C T NPY2R Silent p.F88F 0.32 TCGA-GN-A267-06 4 175709964 175709964 T A GLRA3 Intron 0.34 TCGA-GN-A267-06 4 177056383 177056383 C T WDR17 Missense_Mutation p.S432F 0.33 deleterious(0.01) possibly_damaging(0.795) TCGA-GN-A267-06 4 24556366 24556368 AAG - DHX15 In_Frame_Del p.L354del 0.22 TCGA-GN-A267-06 4 25366777 25366777 G A ZCCHC4 Silent p.K465K 0.24 TCGA-GN-A267-06 4 25366778 25366778 A C ZCCHC4 Silent p.R466R 0.23 TCGA-GN-A267-06 4 42414957 42414957 C T ATP8A1 Silent p.T1157T 0.34 TCGA-GN-A267-06 4 47428075 47428075 C T GABRB1 3'UTR 0.24 TCGA-GN-A267-06 4 57182233 57182233 C T KIAA1211 Silent p.S855S 0.41 TCGA-GN-A267-06 4 619805 619805 C T PDE6B Silent p.I130I 0.35 TCGA-GN-A267-06 4 70355231 70355231 C T UGT2B4 Missense_Mutation p.G310R 0.23 deleterious(0) probably_damaging(0.992) TCGA-GN-A267-06 4 73175171 73175171 C G ADAMTS3 Missense_Mutation p.D708H 0.27 deleterious(0) probably_damaging(0.996) TCGA-GN-A267-06 4 8228805 8228805 G A SH3TC1 Missense_Mutation p.E462K 0.20 tolerated(0.13) possibly_damaging(0.779) TCGA-GN-A267-06 4 84193274 84193274 C T COQ2 Missense_Mutation p.M248I 0.33 deleterious(0) benign(0.26) TCGA-GN-A267-06 4 88584265 88584265 G A DMP1 Silent p.E445E 0.40 TCGA-GN-A267-06 4 91321259 91321259 G A CCSER1 Missense_Mutation p.E528K 0.33 deleterious(0.01) probably_damaging(0.921) TCGA-GN-A267-06 5 101572687 101572687 C T SLCO4C1 Missense_Mutation p.G684R 0.64 tolerated(0.09) possibly_damaging(0.707) TCGA-GN-A267-06 5 118485077 118485077 C T DMXL1 Silent p.L1185L 0.66 TCGA-GN-A267-06 5 129520634 129520634 C T CHSY3 Missense_Mutation p.S600F 0.80 tolerated(0.16) possibly_damaging(0.905) TCGA-GN-A267-06 5 130721235 130721235 G A CDC42SE2 Splice_Site p.X19_splice 0.62 TCGA-GN-A267-06 5 133536105 133536105 A G PPP2CA Missense_Mutation p.F220S 0.56 deleterious(0) probably_damaging(0.962) TCGA-GN-A267-06 5 135287077 135287077 G A LECT2 Intron 0.51 TCGA-GN-A267-06 5 138356955 138356955 G A SIL1 Silent p.S224S 0.59 TCGA-GN-A267-06 5 13911564 13911564 G A DNAH5 Silent p.F525F 0.61 TCGA-GN-A267-06 5 140562300 140562300 T C PCDHB16 Silent p.L56L 0.72 TCGA-GN-A267-06 5 140719847 140719847 C T PCDHGA2 Missense_Mutation p.H437Y 0.58 tolerated_low_confidence(0.13) benign(0.155) TCGA-GN-A267-06 5 140751613 140751613 T C PCDHGB3 Missense_Mutation p.L551S 0.53 deleterious(0.01) possibly_damaging(0.806) TCGA-GN-A267-06 5 156589596 156589596 G A FAM71B Silent p.I560I 0.67 TCGA-GN-A267-06 5 167868736 167868736 C T WWC1 Missense_Mutation p.S777L 0.53 tolerated(0.66) benign(0.035) TCGA-GN-A267-06 5 167896006 167896006 C T WWC1 Missense_Mutation p.S1115F 0.60 deleterious(0) possibly_damaging(0.894) TCGA-GN-A267-06 5 170224519 170224519 G A GABRP Missense_Mutation p.D170N 0.63 deleterious(0) probably_damaging(0.981) TCGA-GN-A267-06 5 175387026 175387026 G A THOC3 Silent p.D334D 0.36 TCGA-GN-A267-06 5 177310777 177310777 C T RP11-423H2.1 RNA 0.45 TCGA-GN-A267-06 5 36035919 36035919 G A UGT3A2 Silent p.L485L 0.75 TCGA-GN-A267-06 5 71740006 71740006 G A ZNF366 Silent p.F604F 0.68 TCGA-GN-A267-06 5 72337118 72337118 G A FCHO2 Silent p.V305V 0.56 TCGA-GN-A267-06 5 74078953 74078953 C T FAM169A Missense_Mutation p.E423K 0.60 tolerated(0.48) benign(0.234) TCGA-GN-A267-06 5 79373993 79373993 G A THBS4 Silent p.V736V 0.65 TCGA-GN-A267-06 6 112035566 112035566 G T FYN Missense_Mutation p.Q110K 0.59 tolerated(0.47) probably_damaging(0.994) TCGA-GN-A267-06 6 142721671 142721671 C T GPR126 Silent p.I539I 0.63 TCGA-GN-A267-06 6 163991872 163991872 C T QKI 3'UTR 0.65 TCGA-GN-A267-06 6 17463268 17463268 C T CAP2 Silent p.F88F 0.25 TCGA-GN-A267-06 6 26505398 26505398 C T BTN1A1 Missense_Mutation p.L225F 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 6 30955900 30955900 C T MUC21 Missense_Mutation p.P544S 0.37 tolerated(0.11) benign(0.3) TCGA-GN-A267-06 6 30955901 30955901 C T MUC21 Missense_Mutation p.P544L 0.36 tolerated(0.19) possibly_damaging(0.884) TCGA-GN-A267-06 6 31125387 31125387 G A CCHCR1 5'UTR 0.42 TCGA-GN-A267-06 6 31592079 31592079 T G PRRC2A Missense_Mutation p.L111R 0.08 unknown(0) TCGA-GN-A267-06 6 31762891 31762915 CCTCCCCATCCGGGACCCTCCCCAG - VARS Frame_Shift_Del p.A27Efs*73 0.11 TCGA-GN-A267-06 6 31839334 31839334 C T SLC44A4 Silent p.L178L 0.36 TCGA-GN-A267-06 6 31868369 31868369 G A ZBTB12 Silent p.S238S 0.27 TCGA-GN-A267-06 6 31868370 31868370 G A ZBTB12 Missense_Mutation p.S238F 0.27 deleterious(0.01) possibly_damaging(0.485) TCGA-GN-A267-06 6 32083443 32083443 G A ATF6B 3'UTR 0.44 TCGA-GN-A267-06 6 32123681 32123681 C A PPT2 Missense_Mutation p.S162Y 0.31 tolerated(1) benign(0.01) TCGA-GN-A267-06 6 33139493 33139493 G A COL11A2 Silent p.V963V 0.32 TCGA-GN-A267-06 6 38906695 38906695 C T DNAH8 Missense_Mutation p.L3763F 0.40 possibly_damaging(0.606) TCGA-GN-A267-06 6 41177423 41177423 G A TREML3P RNA 0.25 TCGA-GN-A267-06 6 42200500 42200500 G A TRERF1 Missense_Mutation p.S1066L 0.46 deleterious(0) benign(0) TCGA-GN-A267-06 6 42237138 42237138 C T TRERF1 Missense_Mutation p.G64D 0.27 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-GN-A267-06 6 42237139 42237139 C T TRERF1 Missense_Mutation p.G64S 0.28 tolerated_low_confidence(0.48) benign(0.082) TCGA-GN-A267-06 6 43164398 43164398 G A CUL9 Silent p.A867A 0.26 TCGA-GN-A267-06 6 43494440 43494440 G A XPO5 Missense_Mutation p.P989L 0.25 tolerated(0.3) benign(0.008) TCGA-GN-A267-06 6 43494441 43494441 G A XPO5 Missense_Mutation p.P989S 0.23 tolerated(0.71) benign(0.001) TCGA-GN-A267-06 6 43752296 43752296 G A VEGFA Silent p.R412R 0.27 TCGA-GN-A267-06 6 46826032 46826032 C T GPR116 Missense_Mutation p.G1203E 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 6 49986740 49986740 T A DEFB110 Missense_Mutation p.R52W 0.21 deleterious(0) probably_damaging(0.995) TCGA-GN-A267-06 6 70070763 70070763 C T BAI3 Missense_Mutation p.L1200F 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-GN-A267-06 6 70871825 70871825 C T COL19A1 Missense_Mutation p.P776S 0.39 tolerated(0.25) benign(0.16) TCGA-GN-A267-06 6 72892167 72892167 G A RIMS1 Silent p.P331P 0.47 TCGA-GN-A267-06 6 7580622 7580622 G A DSP Missense_Mutation p.R1400Q 0.27 probably_damaging(0.986) TCGA-GN-A267-06 6 83851761 83851761 C T DOPEY1 Missense_Mutation p.T1846I 0.44 tolerated(0.14) benign(0.001) TCGA-GN-A267-06 6 84894991 84894991 G A KIAA1009 Missense_Mutation p.S526F 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-GN-A267-06 7 100390093 100390093 C T ZAN Silent p.V2592V 0.47 TCGA-GN-A267-06 7 100390094 100390094 C T ZAN Missense_Mutation p.L2593F 0.47 unknown(0) TCGA-GN-A267-06 7 100876137 100876137 G A CLDN15 Silent p.F147F 0.25 TCGA-GN-A267-06 7 105099683 105099683 G A PUS7 Missense_Mutation p.P594L 0.39 tolerated(0.69) benign(0.292) TCGA-GN-A267-06 7 108155291 108155291 G A PNPLA8 Silent p.F215F 0.24 TCGA-GN-A267-06 7 11415488 11415488 G A THSD7A Missense_Mutation p.P1636L 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-GN-A267-06 7 11513999 11513999 G A THSD7A Silent p.I738I 0.50 TCGA-GN-A267-06 7 120906769 120906769 C T CPED1 Missense_Mutation p.P847L 0.18 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 7 128441254 128441254 C T CCDC136 Silent p.L121L 0.09 TCGA-GN-A267-06 7 134133183 134133183 G A AKR1B1 Silent p.I205I 0.55 TCGA-GN-A267-06 7 138546124 138546124 C T KIAA1549 Missense_Mutation p.A1670T 0.45 tolerated(0.11) benign(0.39) TCGA-GN-A267-06 7 142224030 142224030 G A TRBV11-1 Missense_Mutation p.S46F 0.38 deleterious(0.03) possibly_damaging(0.68) TCGA-GN-A267-06 7 142239828 142239828 G A TRBV9 Missense_Mutation p.P18S 0.26 tolerated(0.62) benign(0.003) TCGA-GN-A267-06 7 143141356 143141356 T C TAS2R60 Missense_Mutation p.F271L 0.05 tolerated(0.32) benign(0.018) TCGA-GN-A267-06 7 150164383 150164383 C T GIMAP8 Silent p.P199P 0.38 TCGA-GN-A267-06 7 150171146 150171146 G A GIMAP8 Silent p.P243P 0.26 TCGA-GN-A267-06 7 150721026 150721026 G C ATG9B Missense_Mutation p.S162C 0.40 deleterious(0.01) possibly_damaging(0.9) TCGA-GN-A267-06 7 156549148 156549148 G A LMBR1 Silent p.D232D 0.21 TCGA-GN-A267-06 7 21775406 21775406 A G DNAH11 Missense_Mutation p.D2537G 0.58 benign(0.138) TCGA-GN-A267-06 7 2578367 2578367 G A BRAT1 Missense_Mutation p.S601F 0.44 deleterious(0) possibly_damaging(0.705) TCGA-GN-A267-06 7 31864516 31864516 G A PDE1C Silent p.T517T 0.50 TCGA-GN-A267-06 7 35709926 35709926 G A HERPUD2 Missense_Mutation p.H80Y 0.47 deleterious(0) possibly_damaging(0.822) TCGA-GN-A267-06 7 4247870 4247870 G A SDK1 Missense_Mutation p.G1785E 0.24 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 7 47479085 47479085 C T TNS3 Silent p.L50L 0.63 TCGA-GN-A267-06 7 53103403 53103403 G A POM121L12 Silent p.G13G 0.42 TCGA-GN-A267-06 7 56079530 56079530 G A PSPH Silent p.I201I 0.24 TCGA-GN-A267-06 7 63727142 63727142 G A ZNF679 Silent p.E377E 0.27 TCGA-GN-A267-06 7 64439187 64439187 G A ZNF117 Silent p.C254C 0.09 TCGA-GN-A267-06 7 6647684 6647684 G A C7orf26 Silent p.L414L 0.16 TCGA-GN-A267-06 7 70256013 70256013 G A AUTS2 3'UTR 0.27 TCGA-GN-A267-06 7 72361499 72361499 C T POM121 5'UTR 0.17 TCGA-GN-A267-06 7 82580453 82580453 C T PCLO Missense_Mutation p.E3151K 0.50 unknown(0) TCGA-GN-A267-06 7 86817419 86817419 G A DMTF1 Missense_Mutation p.G405S 0.39 tolerated(0.31) possibly_damaging(0.632) TCGA-GN-A267-06 7 86817420 86817420 G A DMTF1 Missense_Mutation p.G405D 0.39 tolerated(0.12) possibly_damaging(0.78) TCGA-GN-A267-06 7 99453298 99453298 C T CYP3A43 Missense_Mutation p.S252F 0.19 tolerated(0.11) benign(0.066) TCGA-GN-A267-06 7 99461188 99461188 G A CYP3A43 Missense_Mutation p.D429N 0.16 tolerated(0.63) benign(0.007) TCGA-GN-A267-06 7 99474579 99474579 G A OR2AE1 Silent p.F26F 0.49 TCGA-GN-A267-06 7 99956403 99956403 C T PILRB Missense_Mutation p.P52L 0.37 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 7 99956404 99956404 C T PILRB Silent p.P52P 0.38 TCGA-GN-A267-06 8 10469740 10469740 C T RP1L1 Missense_Mutation p.G623E 0.78 benign(0.219) TCGA-GN-A267-06 8 104897710 104897710 G A RIMS2 Missense_Mutation p.D295N 0.21 tolerated_low_confidence(0.14) benign(0.155) TCGA-GN-A267-06 8 110439318 110439318 G A PKHD1L1 Missense_Mutation p.G978E 0.57 deleterious(0) probably_damaging(0.949) TCGA-GN-A267-06 8 110478892 110478892 C T PKHD1L1 Silent p.F2833F 0.54 TCGA-GN-A267-06 8 110519966 110519966 G A PKHD1L1 Missense_Mutation p.G3690D 0.61 deleterious(0) probably_damaging(1) TCGA-GN-A267-06 8 114031326 114031326 G A CSMD3 Nonsense_Mutation p.R334* 0.65 TCGA-GN-A267-06 8 119391905 119391905 G A SAMD12 Silent p.L119L 0.21 TCGA-GN-A267-06 8 125072424 125072424 C T FER1L6 Missense_Mutation p.P960S 0.61 tolerated(0.26) benign(0.222) TCGA-GN-A267-06 8 125132070 125132070 C T FER1L6 3'UTR 0.15 TCGA-GN-A267-06 8 12958028 12958028 G A DLC1 Silent p.H606H 0.35 TCGA-GN-A267-06 8 142228438 142228438 C T SLC45A4 Missense_Mutation p.G383E 0.11 deleterious(0) probably_damaging(0.969) TCGA-GN-A267-06 8 19805790 19805790 C T LPL Missense_Mutation p.S63F 0.85 tolerated(0.14) probably_damaging(0.981) TCGA-GN-A267-06 8 19805791 19805791 C T LPL Silent p.S63S 0.85 TCGA-GN-A267-06 8 42048910 42048910 C G PLAT Missense_Mutation p.R32T 0.25 deleterious(0.04) possibly_damaging(0.902) TCGA-GN-A267-06 8 52339266 52339266 C T PXDNL Silent p.K526K 0.28 TCGA-GN-A267-06 8 59059230 59059230 C T FAM110B Silent p.H147H 0.58 TCGA-GN-A267-06 8 61121309 61121309 C T CA8 Intron 0.53 TCGA-GN-A267-06 8 69017425 69017425 A G PREX2 Intron 0.52 TCGA-GN-A267-06 8 87567208 87567208 C T CPNE3 Missense_Mutation p.A417V 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-GN-A267-06 9 100975548 100975548 C T TBC1D2 Intron 0.41 TCGA-GN-A267-06 9 101014073 101014073 C T TBC1D2 Missense_Mutation p.E169K 0.33 tolerated(0.12) benign(0.005) TCGA-GN-A267-06 9 104356828 104356828 C T PPP3R2 Missense_Mutation p.D129N 0.30 deleterious(0.02) benign(0.141) TCGA-GN-A267-06 9 107266751 107266751 G A OR13F1 Missense_Mutation p.D70N 0.28 deleterious(0) probably_damaging(0.998) TCGA-GN-A267-06 9 113139557 113139557 C T SVEP1 Missense_Mutation p.E3500K 0.35 probably_damaging(0.998) TCGA-GN-A267-06 9 113547266 113547266 G A MUSK Missense_Mutation p.R519Q 0.29 tolerated(0.1) possibly_damaging(0.793) TCGA-GN-A267-06 9 116060144 116060144 G A RNF183 Silent p.R107R 0.36 TCGA-GN-A267-06 9 116770806 116770806 C T ZNF618 Silent p.P210P 0.24 TCGA-GN-A267-06 9 117029817 117029817 C T COL27A1 Missense_Mutation p.P1161S 0.37 probably_damaging(0.982) TCGA-GN-A267-06 9 118974049 118974049 C T PAPPA Missense_Mutation p.P586S 0.43 deleterious(0.01) possibly_damaging(0.876) TCGA-GN-A267-06 9 127915934 127915934 G A PPP6C Nonsense_Mutation p.Q220* 0.35 TCGA-GN-A267-06 9 131022359 131022379 TCCTTCAGCTCGCTCAGCTTC - GOLGA2 In_Frame_Del p.K590_E596del 0.26 TCGA-GN-A267-06 9 134365897 134365897 T A PRRC2B Intron 0.30 TCGA-GN-A267-06 9 136131067 136131067 C T RP11-430N14.4 5'Flank 0.50 TCGA-GN-A267-06 9 136131068 136131068 C T RP11-430N14.4 5'Flank 0.53 TCGA-GN-A267-06 9 138378269 138378269 C T PPP1R26 Missense_Mutation p.P638L 0.30 tolerated(0.08) probably_damaging(0.958) TCGA-GN-A267-06 9 139345792 139345792 C T SEC16A Silent p.T2076T 0.39 TCGA-GN-A267-06 9 140438180 140438180 T A PNPLA7 Nonsense_Mutation p.K121* 0.34 TCGA-GN-A267-06 9 27168557 27168557 C T TEK Silent p.F143F 0.34 TCGA-GN-A267-06 9 34254447 34254447 C T KIF24 Silent p.R1346R 0.28 TCGA-GN-A267-06 9 35611857 35611857 C T CD72 Nonsense_Mutation p.W298* 0.30 TCGA-GN-A267-06 9 35611858 35611858 C T CD72 Nonsense_Mutation p.W298* 0.29 TCGA-GN-A267-06 9 71866098 71866098 C T TJP2 Missense_Mutation p.R1078W 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-GN-A267-06 9 74364964 74364964 G A TMEM2 Missense_Mutation p.P109L 0.36 tolerated(0.6) benign(0.008) TCGA-GN-A267-06 9 79908348 79908348 T G VPS13A Missense_Mutation p.V1144G 0.28 tolerated(0.1) benign(0.185) TCGA-GN-A267-06 9 95277481 95277481 G A ECM2 Silent p.S162S 0.30 TCGA-GN-A267-06 X 115303742 115303742 G A AGTR2 Missense_Mutation p.C70Y 0.42 tolerated(0.08) possibly_damaging(0.497) TCGA-GN-A267-06 X 12736775 12736775 A T FRMPD4 Missense_Mutation p.E1277V 0.80 tolerated_low_confidence(0.06) benign(0.13) TCGA-GN-A267-06 X 12938041 12938041 C T TLR8 Silent p.L294L 0.84 TCGA-GN-A267-06 X 140993591 140993591 C T MAGEC1 Missense_Mutation p.S134F 0.65 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A267-06 X 142795148 142795148 C T SPANXN2 Missense_Mutation p.G177D 0.73 deleterious_low_confidence(0) unknown(0) TCGA-GN-A267-06 X 148798533 148798533 C T MAGEA11 3'UTR 0.70 TCGA-GN-A267-06 X 150912707 150912707 C T CNGA2 Missense_Mutation p.L578F 0.70 deleterious(0) probably_damaging(0.999) TCGA-GN-A267-06 X 151303507 151303507 G A MAGEA10 Missense_Mutation p.P196S 0.76 deleterious(0) probably_damaging(0.958) TCGA-GN-A267-06 X 153628162 153628162 T C RPL10 Missense_Mutation p.I70T 0.77 deleterious(0.02) possibly_damaging(0.618) TCGA-GN-A267-06 X 30254505 30254505 A T MAGEB3 Missense_Mutation p.K155I 0.83 deleterious(0) benign(0.378) TCGA-GN-A267-06 X 45010862 45010862 C T CXorf36 3'UTR 0.36 TCGA-GN-A267-06 X 48211544 48211544 G T SSX3 Silent p.I107I 0.69 TCGA-GN-A267-06 X 48847551 48847551 G A GRIPAP1 Intron 0.73 TCGA-GN-A267-06 X 68060377 68060377 G A EFNB1 Silent p.R307R 0.69 TCGA-GN-A267-06 X 79698282 79698282 G A FAM46D Missense_Mutation p.D82N 0.79 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 10 106675616 106675616 G A SORCS3 Missense_Mutation p.E241K 0.38 tolerated(0.17) benign(0.184) TCGA-GN-A268-06 10 107015522 107015522 G A SORCS3 Silent p.G1100G 0.45 TCGA-GN-A268-06 10 114044417 114044417 T C TECTB Silent p.G67G 0.39 TCGA-GN-A268-06 10 12940584 12940584 C T CCDC3 Silent p.R215R 0.82 TCGA-GN-A268-06 10 12940585 12940585 C T CCDC3 Missense_Mutation p.R215Q 0.81 tolerated_low_confidence(0.27) benign(0.131) TCGA-GN-A268-06 10 24669938 24669938 G A KIAA1217 Silent p.R165R 0.96 TCGA-GN-A268-06 10 26500832 26500832 C T MYO3A Silent p.Y1597Y 0.94 TCGA-GN-A268-06 10 27702272 27702272 C T PTCHD3 Missense_Mutation p.G303E 0.83 deleterious(0) probably_damaging(0.992) TCGA-GN-A268-06 10 28023715 28023715 C T MKX Missense_Mutation p.E170K 0.88 tolerated(0.06) probably_damaging(0.993) TCGA-GN-A268-06 10 28420515 28420515 G A MPP7 Missense_Mutation p.R141C 0.91 deleterious(0) probably_damaging(0.998) TCGA-GN-A268-06 10 45480284 45480285 - C RASSF4 Frame_Shift_Ins p.Q135Pfs*24 0.31 TCGA-GN-A268-06 10 50255069 50255069 G A VSTM4 Missense_Mutation p.H266Y 0.39 tolerated(0.2) possibly_damaging(0.622) TCGA-GN-A268-06 10 50859978 50859978 G A CHAT Silent p.G520G 0.45 TCGA-GN-A268-06 10 51761856 51761856 C T AGAP6 Missense_Mutation p.S166F 0.47 deleterious_low_confidence(0) possibly_damaging(0.468) TCGA-GN-A268-06 10 61832815 61832815 G A ANK3 Silent p.S2608S 0.23 TCGA-GN-A268-06 10 73326627 73326627 C T CDH23 Silent p.I186I 0.45 TCGA-GN-A268-06 10 74100816 74100816 G A DNAJB12 Silent p.F224F 0.58 TCGA-GN-A268-06 10 85972935 85972935 C T CDHR1 Missense_Mutation p.S624F 0.46 deleterious(0.04) benign(0.126) TCGA-GN-A268-06 10 88702722 88702722 C T MMRN2 Missense_Mutation p.E607K 0.38 deleterious(0.05) possibly_damaging(0.554) TCGA-GN-A268-06 10 90699232 90699232 C T ACTA2 Intron 0.30 TCGA-GN-A268-06 10 90699233 90699233 C T ACTA2 Intron 0.32 TCGA-GN-A268-06 10 95121266 95121266 A G MYOF Missense_Mutation p.W973R 0.37 deleterious(0) probably_damaging(0.995) TCGA-GN-A268-06 10 96541601 96541601 C T CYP2C19 Silent p.I222I 0.40 TCGA-GN-A268-06 11 102668118 102668118 C G MMP1 Silent p.L73L 0.67 TCGA-GN-A268-06 11 113856811 113856811 G A HTR3A Missense_Mutation p.G213R 0.85 deleterious(0) probably_damaging(0.988) TCGA-GN-A268-06 11 114182986 114182986 G A NNMT Silent p.V194V 0.84 TCGA-GN-A268-06 11 114442165 114442165 C T NXPE4 Missense_Mutation p.G377E 0.84 deleterious(0.03) probably_damaging(1) TCGA-GN-A268-06 11 123886691 123886691 G A OR10G4 Missense_Mutation p.G137E 0.70 tolerated(0.27) benign(0.033) TCGA-GN-A268-06 11 48238568 48238568 C T OR4B1 Silent p.I69I 0.54 TCGA-GN-A268-06 11 4869969 4869969 G A OR51S1 Missense_Mutation p.S157F 0.38 tolerated(0.11) benign(0.003) TCGA-GN-A268-06 11 4904108 4904108 G A OR51T1 Missense_Mutation p.D354N 0.67 tolerated_low_confidence(0.26) benign(0.004) TCGA-GN-A268-06 11 4976302 4976302 G A OR51A2 Silent p.L214L 0.95 TCGA-GN-A268-06 11 5153059 5153059 G A OR52A5 Missense_Mutation p.P272S 0.51 tolerated(0.08) benign(0.219) TCGA-GN-A268-06 11 5153739 5153739 G A OR52A5 Missense_Mutation p.S45F 0.48 tolerated(1) benign(0.006) TCGA-GN-A268-06 11 55735637 55735637 C T OR10AG1 Silent p.T101T 0.32 TCGA-GN-A268-06 11 5775927 5775927 G A OR52N4 5'UTR 0.35 TCGA-GN-A268-06 11 61318916 61318916 G A SYT7 Missense_Mutation p.S52F 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-GN-A268-06 11 6292484 6292484 C T CCKBR Missense_Mutation p.A352V 0.45 tolerated(0.79) benign(0.006) TCGA-GN-A268-06 11 64111547 64111547 G A CCDC88B Missense_Mutation p.D512N 0.41 deleterious_low_confidence(0.04) benign(0.124) TCGA-GN-A268-06 11 68540830 68540830 G A CPT1A Missense_Mutation p.S548F 0.61 tolerated(0.12) benign(0.355) TCGA-GN-A268-06 11 6977591 6977591 C T ZNF215 Silent p.F461F 0.46 TCGA-GN-A268-06 11 72145674 72145674 G A CLPB 5'UTR 0.60 TCGA-GN-A268-06 11 76372352 76372352 G A LRRC32 Silent p.A95A 0.54 TCGA-GN-A268-06 11 94038819 94038819 C T FOLR4 Missense_Mutation p.P6L 0.52 tolerated(0.81) benign(0) TCGA-GN-A268-06 12 109847373 109847373 G A MYO1H Silent p.R373R 0.89 TCGA-GN-A268-06 12 115117741 115117741 C T TBX3 Missense_Mutation p.G232R 1.00 tolerated_low_confidence(0.18) benign(0.329) TCGA-GN-A268-06 12 117922325 117922325 G A KSR2 Silent p.I782I 0.86 TCGA-GN-A268-06 12 124335560 124335560 C T DNAH10 Silent p.I1958I 0.85 TCGA-GN-A268-06 12 15097773 15097773 C T ARHGDIB Missense_Mutation p.V115M 0.37 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 12 248380 248380 C T IQSEC3 Silent p.A617A 0.44 TCGA-GN-A268-06 12 2786454 2786454 G A CACNA1C Intron 0.38 TCGA-GN-A268-06 12 41410483 41410483 G A CNTN1 Splice_Site p.X729_splice 0.22 TCGA-GN-A268-06 12 53096962 53096962 C T KRT77 Missense_Mutation p.G86E 0.80 tolerated(0.06) benign(0.075) TCGA-GN-A268-06 12 55524141 55524141 C T OR9K2 Missense_Mutation p.R197W 0.59 deleterious(0.02) benign(0.082) TCGA-GN-A268-06 12 55614883 55614883 T A OR10A7 Silent p.V25V 0.45 TCGA-GN-A268-06 12 57112330 57112330 G A NACA Intron 0.62 TCGA-GN-A268-06 12 57430736 57430736 C T MYO1A Missense_Mutation p.R732Q 0.35 deleterious(0.03) possibly_damaging(0.646) TCGA-GN-A268-06 12 6471234 6471234 C G SCNN1A Missense_Mutation p.Q345H 0.34 tolerated(0.19) benign(0.187) TCGA-GN-A268-06 12 6618900 6618900 C T NCAPD2 Nonsense_Mutation p.R49* 0.45 TCGA-GN-A268-06 12 66345254 66345254 G A HMGA2 Intron 0.43 TCGA-GN-A268-06 12 66597655 66597655 C T IRAK3 Missense_Mutation p.H100Y 0.31 deleterious(0.03) possibly_damaging(0.876) TCGA-GN-A268-06 12 69250441 69250441 C T CPM Missense_Mutation p.D370N 0.37 tolerated(0.48) benign(0.001) TCGA-GN-A268-06 12 70980858 70980858 C T PTPRB Missense_Mutation p.R747Q 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-GN-A268-06 12 71029512 71029512 C T PTPRB Nonsense_Mutation p.W130* 0.57 TCGA-GN-A268-06 12 7639179 7639179 C T CD163 Missense_Mutation p.E792K 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 12 8689719 8689719 C T CLEC4E Missense_Mutation p.E122K 0.47 tolerated(0.45) benign(0.212) TCGA-GN-A268-06 13 24415577 24415577 C T MIPEP Missense_Mutation p.C386Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-GN-A268-06 13 25265129 25265129 C T ATP12A Missense_Mutation p.T276I 0.23 deleterious(0.04) possibly_damaging(0.628) TCGA-GN-A268-06 13 38156623 38156623 G A POSTN Silent p.L424L 0.52 TCGA-GN-A268-06 13 38248468 38248468 C T TRPC4 Missense_Mutation p.G424D 0.27 tolerated(0.61) probably_damaging(0.958) TCGA-GN-A268-06 13 47466685 47466685 C T HTR2A Nonsense_Mutation p.W151* 0.49 TCGA-GN-A268-06 13 49795328 49795328 C T MLNR Silent p.A285A 0.70 TCGA-GN-A268-06 13 61986484 61986484 G A PCDH20 Missense_Mutation p.S583F 0.41 tolerated(0.14) benign(0.038) TCGA-GN-A268-06 13 96242060 96242060 G A DZIP1 Missense_Mutation p.P657L 0.54 deleterious(0) possibly_damaging(0.714) TCGA-GN-A268-06 14 20344609 20344609 C T OR4K2 Silent p.F61F 0.26 TCGA-GN-A268-06 14 63447647 63447647 G A KCNH5 Silent p.I295I 0.88 TCGA-GN-A268-06 14 64898271 64898271 G T MTHFD1 Missense_Mutation p.D445Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-GN-A268-06 14 75747343 75747343 G A FOS Silent p.R158R 0.92 TCGA-GN-A268-06 14 77942259 77942259 C T ISM2 Silent p.L465L 0.88 TCGA-GN-A268-06 15 42434831 42434831 C T PLA2G4F Missense_Mutation p.E742K 0.52 tolerated(0.61) benign(0.001) TCGA-GN-A268-06 15 48058107 48058107 T A SEMA6D Nonsense_Mutation p.L490* 0.31 TCGA-GN-A268-06 15 51529075 51529075 C T CYP19A1 Missense_Mutation p.E93K 0.44 deleterious(0.03) possibly_damaging(0.832) TCGA-GN-A268-06 15 69548401 69548401 C T GLCE Missense_Mutation p.P86S 0.35 tolerated(0.18) benign(0.323) TCGA-GN-A268-06 15 74032299 74032299 G A C15orf59 Missense_Mutation p.P281S 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A268-06 15 78893597 78893597 C T CHRNA3 Missense_Mutation p.E463K 0.52 tolerated(0.14) possibly_damaging(0.559) TCGA-GN-A268-06 15 79080631 79080631 C T ADAMTS7 Missense_Mutation p.D422N 0.41 tolerated(0.12) benign(0.26) TCGA-GN-A268-06 15 94899466 94899466 C T MCTP2 Missense_Mutation p.S369L 0.57 tolerated(0.11) benign(0.016) TCGA-GN-A268-06 16 19451854 19451854 G A TMC5 Missense_Mutation p.G165E 0.45 tolerated_low_confidence(0.05) benign(0.194) TCGA-GN-A268-06 16 19883961 19883961 G A GPRC5B Silent p.I69I 0.56 TCGA-GN-A268-06 16 20681188 20681188 G A ACSM1 Silent p.I291I 0.41 TCGA-GN-A268-06 16 2140375 2140375 G A PKD1 Missense_Mutation p.R4119W 0.43 probably_damaging(1) TCGA-GN-A268-06 16 2140376 2140376 G A PKD1 Silent p.Y4118Y 0.43 TCGA-GN-A268-06 16 24981828 24981828 C T ARHGAP17 Missense_Mutation p.G91E 0.47 deleterious(0) possibly_damaging(0.734) TCGA-GN-A268-06 16 28880340 28880340 C T SH2B1 Missense_Mutation p.S352F 0.44 deleterious(0.01) possibly_damaging(0.582) TCGA-GN-A268-06 16 28880341 28880341 C T SH2B1 Silent p.S352S 0.44 TCGA-GN-A268-06 16 30747894 30747894 C T SRCAP Silent p.F2319F 0.49 TCGA-GN-A268-06 16 4872902 4872902 G A GLYR1 Missense_Mutation p.H219Y 0.40 deleterious(0.01) benign(0.009) TCGA-GN-A268-06 16 49430453 49430453 A G C16orf78 Missense_Mutation p.T172A 0.32 tolerated(0.22) benign(0.006) TCGA-GN-A268-06 16 57695737 57695737 A T GPR56 Missense_Mutation p.Q604L 0.92 deleterious(0.02) possibly_damaging(0.826) TCGA-GN-A268-06 16 67000216 67000216 G A CES3 Missense_Mutation p.E297K 0.97 tolerated(0.11) benign(0.026) TCGA-GN-A268-06 16 67314183 67314183 C T PLEKHG4 Missense_Mutation p.S79L 0.96 deleterious_low_confidence(0.05) benign(0.004) TCGA-GN-A268-06 16 68265985 68265985 C G ESRP2 Missense_Mutation p.R340P 0.42 tolerated(0.13) possibly_damaging(0.758) TCGA-GN-A268-06 16 71319468 71319468 T G CMTR2 Missense_Mutation p.H119P 0.97 deleterious(0) probably_damaging(0.945) TCGA-GN-A268-06 16 71423770 71423770 G A CALB2 3'UTR 0.90 TCGA-GN-A268-06 16 74446934 74446934 C T CLEC18B Splice_Site p.X226_splice 0.79 TCGA-GN-A268-06 17 10310224 10310224 C T MYH8 Missense_Mutation p.E680K 0.51 deleterious(0.01) possibly_damaging(0.757) TCGA-GN-A268-06 17 10360936 10360936 G A MYH4 Silent p.F566F 0.47 TCGA-GN-A268-06 17 10432570 10432570 C T MYH2 Splice_Site p.X1088_splice 0.47 TCGA-GN-A268-06 17 11784565 11784565 C A DNAH9 Silent p.P3547P 0.19 TCGA-GN-A268-06 17 14110213 14110213 C T COX10 Missense_Mutation p.R339W 0.53 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 17 1631701 1631701 G C WDR81 Missense_Mutation p.E1150Q 0.51 tolerated(0.23) probably_damaging(0.993) TCGA-GN-A268-06 17 17697373 17697373 C T RAI1 Missense_Mutation p.P371S 0.43 tolerated(0.22) benign(0.066) TCGA-GN-A268-06 17 26106012 26106012 C T NOS2 Missense_Mutation p.V359M 0.41 tolerated(0.07) probably_damaging(0.989) TCGA-GN-A268-06 17 27613814 27613814 G A NUFIP2 Nonsense_Mutation p.Q400* 0.42 TCGA-GN-A268-06 17 27613815 27613815 G A NUFIP2 Silent p.S399S 0.42 TCGA-GN-A268-06 17 30303584 30303584 G A SUZ12 Missense_Mutation p.D290N 0.54 tolerated(0.22) possibly_damaging(0.498) TCGA-GN-A268-06 17 34236331 34236331 G A AC015849.16 RNA 0.27 TCGA-GN-A268-06 17 34313661 34313661 G A CCL14 Missense_Mutation p.P9S 0.40 tolerated(1) benign(0.001) TCGA-GN-A268-06 17 36453140 36453140 C T MRPL45 5'UTR 0.29 TCGA-GN-A268-06 17 38907211 38907211 C T KRT25 Missense_Mutation p.A318T 0.54 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 17 39165008 39165008 G A KRTAP3-1 3'UTR 0.68 TCGA-GN-A268-06 17 39274365 39274365 C T KRTAP4-11 Missense_Mutation p.R68K 0.33 deleterious(0.01) unknown(0) TCGA-GN-A268-06 17 39659341 39659341 C T KRT13 Missense_Mutation p.E249K 0.45 tolerated(0.11) probably_damaging(0.999) TCGA-GN-A268-06 17 4015961 4015961 G A ZZEF1 Silent p.I336I 0.33 TCGA-GN-A268-06 17 40467736 40467736 C T STAT3 3'UTR 0.41 TCGA-GN-A268-06 17 42272039 42272039 G A ATXN7L3 Silent p.V254V 0.38 TCGA-GN-A268-06 17 45916883 45916883 G A SCRN2 Silent p.F161F 0.36 TCGA-GN-A268-06 17 49052209 49052209 G A SPAG9 Missense_Mutation p.P1208L 0.59 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 17 56344852 56344852 G A LPO Silent p.G612G 0.22 TCGA-GN-A268-06 17 65914951 65914951 A T BPTF Missense_Mutation p.T1809S 0.72 probably_damaging(0.998) TCGA-GN-A268-06 17 67028394 67028394 G A ABCA9 Missense_Mutation p.P434S 0.54 deleterious(0.01) benign(0.373) TCGA-GN-A268-06 17 72741335 72741335 G T RAB37 Intron 0.59 TCGA-GN-A268-06 17 73498951 73498951 C T CASKIN2 Missense_Mutation p.G735D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A268-06 17 77811688 77811688 C A CBX4 Nonsense_Mutation p.E43* 0.56 TCGA-GN-A268-06 17 8161174 8161174 T C PFAS Silent p.F375F 0.49 TCGA-GN-A268-06 18 2762185 2762185 G A SMCHD1 Missense_Mutation p.R1506H 0.50 tolerated(0.09) benign(0.006) TCGA-GN-A268-06 18 28667687 28667687 G A DSC2 Silent p.Y240Y 0.48 TCGA-GN-A268-06 18 50592416 50592416 G A DCC Missense_Mutation p.G381R 0.40 tolerated(0.27) benign(0.089) TCGA-GN-A268-06 18 72589159 72589159 T C ZNF407 Silent p.F1628F 0.41 TCGA-GN-A268-06 18 77797460 77797460 C T RBFA Missense_Mutation p.P111L 0.31 tolerated(0.54) probably_damaging(0.943) TCGA-GN-A268-06 18 77895923 77895923 C T ADNP2 Missense_Mutation p.T876I 0.53 deleterious(0) probably_damaging(0.995) TCGA-GN-A268-06 19 10565554 10565554 G A PDE4A Missense_Mutation p.R278K 0.57 tolerated(0.25) benign(0.041) TCGA-GN-A268-06 19 12060344 12060344 C T ZNF700 Missense_Mutation p.P502L 0.54 deleterious(0) benign(0.058) TCGA-GN-A268-06 19 12969541 12969541 G A MAST1 Missense_Mutation p.E452K 0.26 deleterious(0) possibly_damaging(0.755) TCGA-GN-A268-06 19 15651519 15651519 C T CYP4F22 Silent p.L310L 0.56 TCGA-GN-A268-06 19 15918279 15918279 C T OR10H1 Missense_Mutation p.G190E 0.41 tolerated(0.24) possibly_damaging(0.739) TCGA-GN-A268-06 19 16799109 16799109 C T TMEM38A Missense_Mutation p.S276L 0.60 tolerated(0.06) benign(0.036) TCGA-GN-A268-06 19 18260381 18260381 C G MAST3 Missense_Mutation p.R1259G 0.45 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-GN-A268-06 19 22363802 22363802 G A ZNF676 Silent p.I239I 0.21 TCGA-GN-A268-06 19 3907814 3907814 C T ATCAY Silent p.S147S 0.37 TCGA-GN-A268-06 19 40368845 40368845 G A FCGBP Missense_Mutation p.S4168F 0.20 possibly_damaging(0.788) TCGA-GN-A268-06 19 42133303 42133303 C T CEACAM4 Missense_Mutation p.G10E 0.29 deleterious(0.02) benign(0.407) TCGA-GN-A268-06 19 42133304 42133304 C T CEACAM4 Missense_Mutation p.G10R 0.29 tolerated(1) benign(0.004) TCGA-GN-A268-06 19 42480592 42480592 G A ATP1A3 Silent p.I703I 0.39 TCGA-GN-A268-06 19 44096313 44096313 G A IRGQ Silent p.F579F 0.32 TCGA-GN-A268-06 19 44352174 44352174 T C ZNF283 Missense_Mutation p.L474P 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 19 45185854 45185854 C T CEACAM19 Missense_Mutation p.P270S 0.29 tolerated(0.38) benign(0.022) TCGA-GN-A268-06 19 45854664 45854664 G A ERCC2 3'UTR 0.55 TCGA-GN-A268-06 19 47575047 47575047 G A ZC3H4 Silent p.L712L 0.35 TCGA-GN-A268-06 19 51140732 51140732 G A SYT3 5'UTR 0.45 TCGA-GN-A268-06 19 51200373 51200373 C T SHANK1 Missense_Mutation p.M648I 0.52 benign(0.011) TCGA-GN-A268-06 19 51537262 51537262 G C KLK12 Silent p.V57V 0.67 TCGA-GN-A268-06 19 52002831 52002831 G A SIGLEC12 Silent p.S316S 0.49 TCGA-GN-A268-06 19 52272498 52272498 C T FPR2 Missense_Mutation p.T196I 0.39 tolerated(0.22) benign(0.021) TCGA-GN-A268-06 19 54327341 54327341 A C NLRP12 Missense_Mutation p.L30V 0.36 tolerated(0.12) benign(0.301) TCGA-GN-A268-06 19 56244087 56244087 G A NLRP9 Silent p.S370S 0.62 TCGA-GN-A268-06 19 56297047 56297047 G A NLRP11 Missense_Mutation p.P1016S 0.49 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GN-A268-06 19 56329286 56329286 G A NLRP11 Silent p.I85I 0.51 TCGA-GN-A268-06 19 56572834 56572834 C T NLRP5 Silent p.V1181V 0.56 TCGA-GN-A268-06 19 58087261 58087261 G A ZNF416 Missense_Mutation p.S38F 0.60 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 19 59057158 59057158 C T TRIM28 Missense_Mutation p.P161S 0.55 tolerated(0.06) possibly_damaging(0.61) TCGA-GN-A268-06 19 59057159 59057159 C T TRIM28 Missense_Mutation p.P161L 0.55 tolerated(0.08) benign(0.071) TCGA-GN-A268-06 19 6366267 6366267 A T CLPP Splice_Site p.X186_splice 0.50 TCGA-GN-A268-06 19 8587285 8587285 C T MYO1F Missense_Mutation p.E1066K 0.47 deleterious(0.02) benign(0.089) TCGA-GN-A268-06 19 9088904 9088904 T C MUC16 Missense_Mutation p.S971G 0.41 unknown(0) TCGA-GN-A268-06 19 9296981 9296981 C T OR7D2 Missense_Mutation p.P175L 0.45 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-GN-A268-06 1 110584359 110584359 C T STRIP1 Missense_Mutation p.S254F 0.57 tolerated(0.87) possibly_damaging(0.803) TCGA-GN-A268-06 1 112524383 112524383 G A KCND3 Silent p.G322G 0.56 TCGA-GN-A268-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.37 deleterious(0.01) benign(0.045) TCGA-GN-A268-06 1 12726394 12726394 C T AADACL4 Missense_Mutation p.P291L 0.48 deleterious(0.01) probably_damaging(0.963) TCGA-GN-A268-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.17 tolerated(0.14) benign(0.015) TCGA-GN-A268-06 1 12955399 12955399 G A PRAMEF10 Missense_Mutation p.R94C 0.43 tolerated(0.11) benign(0.073) TCGA-GN-A268-06 1 14107071 14107071 C T PRDM2 Silent p.L927L 0.45 TCGA-GN-A268-06 1 152281783 152281783 C T FLG Missense_Mutation p.G1860E 0.49 probably_damaging(0.931) TCGA-GN-A268-06 1 152287016 152287016 C T FLG Missense_Mutation p.E116K 0.43 benign(0.053) TCGA-GN-A268-06 1 152732689 152732689 C T KPRP Nonsense_Mutation p.Q209* 0.50 TCGA-GN-A268-06 1 153084847 153084847 C T SPRR2F 3'UTR 0.47 TCGA-GN-A268-06 1 155708080 155708080 C T DAP3 3'UTR 0.13 TCGA-GN-A268-06 1 156006767 156006767 G A UBQLN4 3'UTR 0.44 TCGA-GN-A268-06 1 157557755 157557755 G A FCRL4 Silent p.I154I 0.35 TCGA-GN-A268-06 1 158064897 158064897 A T KIRREL Missense_Mutation p.Q754L 0.38 deleterious(0) probably_damaging(0.996) TCGA-GN-A268-06 1 158585181 158585181 C T SPTA1 Missense_Mutation p.E2205K 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 1 158687210 158687210 C T OR6K3 Silent p.G232G 0.50 TCGA-GN-A268-06 1 158906944 158906944 C T PYHIN1 Missense_Mutation p.L82F 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A268-06 1 159557927 159557927 C T APCS Missense_Mutation p.S34F 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 1 162381832 162381832 G A SH2D1B 5'UTR 0.43 TCGA-GN-A268-06 1 176903435 176903435 G A ASTN1 Missense_Mutation p.R842C 0.47 deleterious(0) probably_damaging(0.993) TCGA-GN-A268-06 1 179530463 179530463 G A NPHS2 Nonsense_Mutation p.R138* 0.44 TCGA-GN-A268-06 1 196762545 196762545 G A CFHR3 Missense_Mutation p.E299K 0.61 tolerated(0.12) benign(0.391) TCGA-GN-A268-06 1 207741217 207741217 G A CR1 Missense_Mutation p.G1334E 0.45 deleterious(0.05) probably_damaging(0.971) TCGA-GN-A268-06 1 22150732 22150732 G A LDLRAD2 3'UTR 0.47 TCGA-GN-A268-06 1 223568575 223568575 C A C1orf65 Missense_Mutation p.F586L 0.42 tolerated(0.15) benign(0.148) TCGA-GN-A268-06 1 22850922 22850922 C T ZBTB40 Silent p.A1170A 0.48 TCGA-GN-A268-06 1 231344874 231344874 C T TRIM67 Silent p.A667A 0.06 TCGA-GN-A268-06 1 234452368 234452368 C T SLC35F3 Silent p.A283A 0.48 TCGA-GN-A268-06 1 240070799 240070799 C T CHRM3 Silent p.I16I 0.37 TCGA-GN-A268-06 1 24119680 24119680 T C LYPLA2 Silent p.P50P 0.67 TCGA-GN-A268-06 1 242253243 242253243 C T PLD5 Silent p.P508P 0.48 TCGA-GN-A268-06 1 247201179 247201179 T A ZNF670 Missense_Mutation p.T248S 0.98 tolerated(0.14) benign(0.045) TCGA-GN-A268-06 1 247587456 247587456 G A NLRP3 Silent p.R237R 0.53 TCGA-GN-A268-06 1 247655377 247655377 G A OR2W5 RNA 0.39 TCGA-GN-A268-06 1 248004797 248004797 G A OR11L1 Silent p.F134F 0.45 TCGA-GN-A268-06 1 32280615 32280615 A C SPOCD1 Missense_Mutation p.V107G 0.60 deleterious_low_confidence(0.01) benign(0.007) TCGA-GN-A268-06 1 33999434 33999434 G T CSMD2 Missense_Mutation p.P3174Q 0.10 tolerated(0.08) benign(0.261) TCGA-GN-A268-06 1 38301355 38301355 G A MTF1 Missense_Mutation p.R281C 0.46 deleterious(0) probably_damaging(0.997) TCGA-GN-A268-06 1 39878830 39878830 A G KIAA0754 Missense_Mutation p.T829A 0.46 unknown(0) TCGA-GN-A268-06 1 43212861 43212861 G A LEPRE1 Missense_Mutation p.P713S 0.44 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-GN-A268-06 1 47276491 47276491 G A CYP4B1 Silent p.T64T 0.41 TCGA-GN-A268-06 1 48861028 48861028 T C SPATA6 Splice_Site p.X261_splice 0.31 TCGA-GN-A268-06 1 57258413 57258413 G A C1orf168 Missense_Mutation p.P25S 0.50 tolerated(0.24) benign(0.426) TCGA-GN-A268-06 1 66102125 66102125 G A LEPR Silent p.E975E 0.41 TCGA-GN-A268-06 1 82408790 82408790 C T LPHN2 Missense_Mutation p.R179C 0.42 deleterious(0) probably_damaging(0.993) TCGA-GN-A268-06 1 82416061 82416061 C T LPHN2 Missense_Mutation p.P463S 0.43 tolerated(0.07) possibly_damaging(0.897) TCGA-GN-A268-06 1 98205983 98205983 C T DPYD Missense_Mutation p.D96N 0.34 deleterious(0.04) possibly_damaging(0.594) TCGA-GN-A268-06 20 13279729 13279729 C T ISM1 Missense_Mutation p.R340C 0.18 deleterious(0) possibly_damaging(0.713) TCGA-GN-A268-06 20 21142672 21142672 C T RP4-777D9.2 Intron 0.33 TCGA-GN-A268-06 20 2308845 2308845 C T TGM3 Silent p.I389I 0.49 TCGA-GN-A268-06 20 30231300 30231300 G A COX4I2 Missense_Mutation p.G114E 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 20 34214185 34214185 G A CPNE1 Missense_Mutation p.P536L 0.41 deleterious(0.02) benign(0.19) TCGA-GN-A268-06 20 45354398 45354398 C T SLC2A10 Silent p.F241F 0.36 TCGA-GN-A268-06 20 50418919 50418919 T A SALL4 Missense_Mutation p.Q10L 0.45 deleterious(0) probably_damaging(0.989) TCGA-GN-A268-06 20 51870774 51870774 G A TSHZ2 Silent p.R259R 0.35 TCGA-GN-A268-06 20 52583470 52583470 G A BCAS1 Missense_Mutation p.S442F 0.47 deleterious(0.01) possibly_damaging(0.807) TCGA-GN-A268-06 20 62198992 62198992 G A HELZ2 Intron 0.35 TCGA-GN-A268-06 20 62407078 62407078 C T ZBTB46 Missense_Mutation p.G392D 0.43 tolerated(0.15) benign(0.103) TCGA-GN-A268-06 21 43543053 43543053 C T UMODL1 Silent p.P1108P 0.97 TCGA-GN-A268-06 22 17264815 17264815 C T XKR3 Missense_Mutation p.M358I 0.46 deleterious(0.01) benign(0.002) TCGA-GN-A268-06 22 18609239 18609239 C T TUBA8 Missense_Mutation p.S165F 0.41 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-GN-A268-06 22 20457900 20457900 C T RIMBP3 Silent p.K1134K 0.11 TCGA-GN-A268-06 22 21982731 21982731 G A YDJC Silent p.P316P 0.38 TCGA-GN-A268-06 22 22892178 22892178 A G PRAME Missense_Mutation p.F308S 0.53 deleterious(0.02) possibly_damaging(0.88) TCGA-GN-A268-06 22 25961064 25961064 G A ADRBK2 Silent p.K19K 0.37 TCGA-GN-A268-06 22 32097690 32097690 G A PRR14L Missense_Mutation p.P2020L 0.48 deleterious(0) benign(0.427) TCGA-GN-A268-06 22 46658227 46658227 G A PKDREJ Silent p.I331I 0.49 TCGA-GN-A268-06 22 46658241 46658241 C G PKDREJ Missense_Mutation p.V327L 0.48 deleterious(0.02) possibly_damaging(0.515) TCGA-GN-A268-06 2 10105488 10105488 G A GRHL1 Nonsense_Mutation p.W363* 0.39 TCGA-GN-A268-06 2 108496562 108496562 A G RGPD4 Missense_Mutation p.K1688R 0.57 tolerated_low_confidence(0.08) benign(0.064) TCGA-GN-A268-06 2 108604737 108604737 C T SLC5A7 Silent p.I42I 0.39 TCGA-GN-A268-06 2 112760692 112760692 G A MERTK Missense_Mutation p.E572K 0.45 deleterious(0) possibly_damaging(0.611) TCGA-GN-A268-06 2 113764228 113764228 G A IL36A Missense_Mutation p.G60R 0.57 deleterious(0) probably_damaging(0.955) TCGA-GN-A268-06 2 128520638 128520638 C T WDR33 Missense_Mutation p.R241Q 0.37 deleterious(0.01) unknown(0) TCGA-GN-A268-06 2 138169256 138169256 G A THSD7B Missense_Mutation p.E925K 0.43 tolerated(1) possibly_damaging(0.486) TCGA-GN-A268-06 2 141079626 141079626 T A LRP1B Missense_Mutation p.E4182D 0.50 benign(0.217) TCGA-GN-A268-06 2 141458189 141458189 C T LRP1B Silent p.G2143G 0.26 TCGA-GN-A268-06 2 145147503 145147503 G A ZEB2 Missense_Mutation p.P1054S 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-GN-A268-06 2 1488405 1488405 G A TPO Missense_Mutation p.G459E 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 2 163279838 163279838 A G KCNH7 Intron 0.53 TCGA-GN-A268-06 2 166898891 166898891 G A SCN1A Missense_Mutation p.S696F 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-GN-A268-06 2 168101437 168101437 G A XIRP2 Missense_Mutation p.G1179R 0.37 probably_damaging(0.988) TCGA-GN-A268-06 2 176973654 176973654 G T HOXD11 Silent p.R267R 0.60 TCGA-GN-A268-06 2 179434020 179434020 G A TTN Silent p.I25613I 0.36 TCGA-GN-A268-06 2 179446810 179446810 C T TTN Missense_Mutation p.E22096K 0.18 TCGA-GN-A268-06 2 179465767 179465767 C T TTN Missense_Mutation p.D18622N 0.61 TCGA-GN-A268-06 2 179538427 179538427 C T TTN Silent p.V11573V 0.25 TCGA-GN-A268-06 2 179596978 179596978 A T TTN Missense_Mutation p.I5573N 0.40 TCGA-GN-A268-06 2 179636046 179636046 C T TTN Missense_Mutation p.D2670N 0.37 TCGA-GN-A268-06 2 179640316 179640316 C T TTN Missense_Mutation p.G2092E 0.41 TCGA-GN-A268-06 2 183616503 183616503 C T DNAJC10 Silent p.F475F 0.30 TCGA-GN-A268-06 2 183616504 183616504 T A DNAJC10 Missense_Mutation p.F476I 0.30 deleterious(0) probably_damaging(0.981) TCGA-GN-A268-06 2 185798432 185798432 C T ZNF804A Silent p.L120L 0.33 TCGA-GN-A268-06 2 189927614 189927614 G A COL5A2 Missense_Mutation p.P652S 0.50 possibly_damaging(0.707) TCGA-GN-A268-06 2 192194691 192194691 C T MYO1B Silent p.S94S 0.51 TCGA-GN-A268-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-GN-A268-06 2 227963478 227963478 C T COL4A4 Missense_Mutation p.G379E 0.47 probably_damaging(0.993) TCGA-GN-A268-06 2 228228493 228228493 C T TM4SF20 Missense_Mutation p.G213S 0.45 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 2 228882709 228882709 C T SPHKAP Missense_Mutation p.G954E 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 2 234652314 234652314 G A UGT1A10 Intron 0.48 TCGA-GN-A268-06 2 238277429 238277429 G A COL6A3 Silent p.F1559F 0.41 TCGA-GN-A268-06 2 240984587 240984587 C T OR6B3 Silent p.L301L 0.49 TCGA-GN-A268-06 2 242572709 242572709 G A THAP4 Missense_Mutation p.S288L 0.38 tolerated_low_confidence(0.1) benign(0.194) TCGA-GN-A268-06 2 26676285 26676285 G A DRC1 Missense_Mutation p.G596E 0.47 tolerated(0.2) benign(0.012) TCGA-GN-A268-06 2 26702497 26702497 C T OTOF Missense_Mutation p.G646D 0.49 deleterious(0.02) probably_damaging(0.963) TCGA-GN-A268-06 2 27824259 27824259 C T ZNF512 Missense_Mutation p.R207C 0.53 deleterious(0) possibly_damaging(0.53) TCGA-GN-A268-06 2 50573968 50573968 G A NRXN1 Intron 0.52 TCGA-GN-A268-06 2 60695964 60695964 T C BCL11A Silent p.K130K 0.54 TCGA-GN-A268-06 2 71189977 71189977 C T ATP6V1B1 Missense_Mutation p.H286Y 0.60 deleterious(0) probably_damaging(0.996) TCGA-GN-A268-06 2 73678215 73678215 C T ALMS1 Missense_Mutation p.P1520S 0.67 benign(0.008) TCGA-GN-A268-06 2 79312333 79312333 C T REG1B 3'UTR 0.27 TCGA-GN-A268-06 2 84777072 84777072 C T DNAH6 Missense_Mutation p.A459V 0.34 deleterious(0) benign(0.04) TCGA-GN-A268-06 3 111940000 111940000 C T SLC9C1 Missense_Mutation p.E549K 0.90 tolerated(0.55) benign(0.001) TCGA-GN-A268-06 3 133666258 133666258 C T SLCO2A1 Silent p.G379G 1.00 TCGA-GN-A268-06 3 16306455 16306455 G A DPH3 5'UTR 0.56 TCGA-GN-A268-06 3 16419364 16419364 C T RFTN1 Silent p.G229G 0.53 TCGA-GN-A268-06 3 169656259 169656259 C T SAMD7 Missense_Mutation p.P436S 1.00 tolerated(0.51) benign(0.352) TCGA-GN-A268-06 3 183551530 183551530 G A PARL Silent p.F304F 0.94 TCGA-GN-A268-06 3 38768112 38768112 C T SCN10A Silent p.V1024V 0.55 TCGA-GN-A268-06 3 38770242 38770242 C T SCN10A Missense_Mutation p.E811K 0.22 tolerated(1) benign(0.009) TCGA-GN-A268-06 3 38936144 38936144 C T SCN11A Silent p.K905K 0.26 TCGA-GN-A268-06 3 47378198 47378198 C T KLHL18 Missense_Mutation p.P358S 0.48 deleterious(0.03) probably_damaging(0.974) TCGA-GN-A268-06 3 47378199 47378199 C T KLHL18 Missense_Mutation p.P358L 0.47 deleterious(0.01) probably_damaging(0.982) TCGA-GN-A268-06 3 50471844 50471844 C T CACNA2D2 Missense_Mutation p.R102Q 0.67 tolerated(0.4) possibly_damaging(0.477) TCGA-GN-A268-06 3 50879124 50879124 C T DOCK3 Missense_Mutation p.S47L 0.44 tolerated(0.31) probably_damaging(0.994) TCGA-GN-A268-06 3 52545723 52545723 G A STAB1 Missense_Mutation p.D949N 0.64 tolerated(1) benign(0.042) TCGA-GN-A268-06 3 78684948 78684948 G A ROBO1 Silent p.I1116I 0.32 TCGA-GN-A268-06 3 85961597 85961597 G A CADM2 Missense_Mutation p.D195N 0.21 tolerated(0.78) benign(0.049) TCGA-GN-A268-06 3 8794857 8794857 G A OXTR Missense_Mutation p.P326S 0.57 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 3 9911928 9911928 C T CIDEC Missense_Mutation p.E106K 0.26 deleterious(0.01) possibly_damaging(0.555) TCGA-GN-A268-06 4 109767312 109767312 C T COL25A1 Missense_Mutation p.G500R 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 4 126329908 126329908 G A FAT4 Missense_Mutation p.G1960E 0.44 probably_damaging(0.951) TCGA-GN-A268-06 4 128930340 128930340 C T C4orf29 Missense_Mutation p.P146S 0.80 deleterious(0.01) probably_damaging(0.943) TCGA-GN-A268-06 4 138451472 138451472 G A PCDH18 Missense_Mutation p.P591S 0.43 tolerated(0.31) benign(0.129) TCGA-GN-A268-06 4 146435880 146435880 A G SMAD1 Missense_Mutation p.K39E 0.33 deleterious(0) possibly_damaging(0.874) TCGA-GN-A268-06 4 156632089 156632089 C T GUCY1A3 Missense_Mutation p.H258Y 0.42 deleterious(0.04) benign(0.105) TCGA-GN-A268-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.62 TCGA-GN-A268-06 4 159569787 159569787 C T RXFP1 Silent p.F631F 0.41 TCGA-GN-A268-06 4 16504280 16504280 G A LDB2 Nonsense_Mutation p.Q370* 0.46 TCGA-GN-A268-06 4 166385646 166385646 G A CPE Missense_Mutation p.G138R 0.47 tolerated(0.14) possibly_damaging(0.889) TCGA-GN-A268-06 4 166978447 166978447 G A TLL1 Missense_Mutation p.R611K 0.46 tolerated(1) benign(0.001) TCGA-GN-A268-06 4 175229985 175229985 T C CEP44 Missense_Mutation p.V218A 0.37 tolerated(0.26) benign(0.009) TCGA-GN-A268-06 4 177142381 177142381 G A ASB5 Missense_Mutation p.P199S 0.51 tolerated(0.35) probably_damaging(0.993) TCGA-GN-A268-06 4 187179233 187179233 T A KLKB1 Missense_Mutation p.I595N 0.40 deleterious(0) probably_damaging(0.997) TCGA-GN-A268-06 4 187455010 187455010 C T MTNR1A Missense_Mutation p.G296R 0.36 deleterious(0.03) possibly_damaging(0.854) TCGA-GN-A268-06 4 187510159 187510159 G T FAT1 Missense_Mutation p.P4452T 0.47 possibly_damaging(0.484) TCGA-GN-A268-06 4 20550726 20550726 G A SLIT2 Missense_Mutation p.D822N 0.44 tolerated(0.57) benign(0.023) TCGA-GN-A268-06 4 22820513 22820513 C T GBA3 Silent p.I459I 0.56 TCGA-GN-A268-06 4 3230356 3230356 C T HTT Silent p.S2621S 0.43 TCGA-GN-A268-06 4 39523079 39523079 G C UGDH Silent p.P18P 0.42 TCGA-GN-A268-06 4 43032430 43032430 C T GRXCR1 Missense_Mutation p.P249L 0.45 tolerated(0.27) probably_damaging(0.998) TCGA-GN-A268-06 4 52948629 52948629 G A SPATA18 Missense_Mutation p.D478N 0.54 tolerated(0.08) probably_damaging(0.981) TCGA-GN-A268-06 4 69433930 69433930 C T UGT2B17 Missense_Mutation p.M91I 0.49 tolerated(0.22) benign(0.003) TCGA-GN-A268-06 4 73013428 73013428 C T NPFFR2 Missense_Mutation p.P490S 0.48 tolerated_low_confidence(0.32) benign(0.004) TCGA-GN-A268-06 4 79321903 79321903 C T FRAS1 Nonsense_Mutation p.Q1331* 0.26 TCGA-GN-A268-06 4 79841644 79841644 C T PAQR3 3'UTR 0.35 TCGA-GN-A268-06 4 80328516 80328516 C T GK2 Missense_Mutation p.G280E 0.49 deleterious(0) probably_damaging(0.994) TCGA-GN-A268-06 4 91701608 91701608 G A CCSER1 Intron 0.21 TCGA-GN-A268-06 5 102493923 102493923 G A PPIP5K2 Silent p.L507L 0.94 TCGA-GN-A268-06 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.49 TCGA-GN-A268-06 5 118970422 118970422 G A FAM170A Missense_Mutation p.D327N 0.92 deleterious_low_confidence(0.03) benign(0.176) TCGA-GN-A268-06 5 134785516 134785516 G A TIFAB Silent p.L38L 0.89 TCGA-GN-A268-06 5 140207653 140207653 G A PCDHA6 5'UTR 0.95 TCGA-GN-A268-06 5 140516557 140516557 C T PCDHB5 Missense_Mutation p.A514V 0.92 deleterious_low_confidence(0.03) benign(0.068) TCGA-GN-A268-06 5 140589843 140589843 C T PCDHB12 Missense_Mutation p.S455F 0.90 deleterious_low_confidence(0.01) benign(0.064) TCGA-GN-A268-06 5 156184589 156184589 C T SGCD Intron 0.92 TCGA-GN-A268-06 5 15936668 15936668 C T FBXL7 Silent p.F283F 0.65 TCGA-GN-A268-06 5 26988428 26988428 G A CDH9 Missense_Mutation p.H5Y 0.46 tolerated_low_confidence(0.82) benign(0) TCGA-GN-A268-06 5 38876401 38876401 C T OSMR Missense_Mutation p.P58S 0.48 tolerated(0.93) benign(0.012) TCGA-GN-A268-06 5 41153958 41153958 C T C6 Silent p.G748G 0.36 TCGA-GN-A268-06 5 64747412 64747412 G A ADAMTS6 Silent p.S321S 1.00 TCGA-GN-A268-06 5 89986803 89986803 C T GPR98 Missense_Mutation p.T2299I 0.90 possibly_damaging(0.86) TCGA-GN-A268-06 6 117130756 117130756 T C GPRC6A Silent p.Q73Q 0.94 TCGA-GN-A268-06 6 123319255 123319255 G A CLVS2 Silent p.L111L 0.96 TCGA-GN-A268-06 6 135264979 135264979 G A ALDH8A1 Silent p.A88A 0.93 TCGA-GN-A268-06 6 144095234 144095234 G T PHACTR2 Missense_Mutation p.A491S 0.87 deleterious(0) probably_damaging(0.997) TCGA-GN-A268-06 6 160212105 160212105 C A MRPL18 Silent p.A62A 1.00 TCGA-GN-A268-06 6 24563610 24563610 C T KIAA0319 Silent p.K856K 0.43 TCGA-GN-A268-06 6 31868444 31868444 C A ZBTB12 Silent p.V213V 0.43 TCGA-GN-A268-06 6 32188893 32188893 G A NOTCH4 Missense_Mutation p.L221F 0.48 tolerated(0.06) probably_damaging(0.949) TCGA-GN-A268-06 6 41617465 41617465 G A MDFI Missense_Mutation p.G123D 0.44 deleterious(0) possibly_damaging(0.892) TCGA-GN-A268-06 6 42147050 42147050 G A GUCA1A Missense_Mutation p.R172Q 0.34 tolerated(0.1) benign(0.004) TCGA-GN-A268-06 6 46826619 46826619 G T GPR116 Silent p.L1007L 0.23 TCGA-GN-A268-06 6 46874490 46874490 G A GPR116 Missense_Mutation p.P4S 0.32 tolerated(0.08) benign(0.1) TCGA-GN-A268-06 6 46977054 46977054 C T GPR110 Missense_Mutation p.G706D 0.33 deleterious(0.02) probably_damaging(1) TCGA-GN-A268-06 6 46977447 46977447 G C GPR110 Missense_Mutation p.P575R 0.51 deleterious(0.02) benign(0.124) TCGA-GN-A268-06 6 47251987 47251987 C T TNFRSF21 Silent p.L310L 0.26 TCGA-GN-A268-06 6 49700982 49700982 G A CRISP3 Silent p.L172L 0.28 TCGA-GN-A268-06 6 55147094 55147094 C T HCRTR2 Missense_Mutation p.R393W 0.45 deleterious(0.02) possibly_damaging(0.849) TCGA-GN-A268-06 6 55196536 55196536 G A GFRAL Missense_Mutation p.E16K 0.61 tolerated(0.42) benign(0.003) TCGA-GN-A268-06 6 75848260 75848260 C T COL12A1 Missense_Mutation p.E1712K 0.30 benign(0.181) TCGA-GN-A268-06 6 80223375 80223375 G A LCA5 Missense_Mutation p.P92S 0.97 tolerated(0.53) benign(0.012) TCGA-GN-A268-06 6 84292048 84292048 G A SNAP91 Missense_Mutation p.S681F 0.80 deleterious(0) probably_damaging(0.992) TCGA-GN-A268-06 6 96651051 96651051 G A FUT9 Missense_Mutation p.G7E 0.93 tolerated(0.67) possibly_damaging(0.755) TCGA-GN-A268-06 7 1195144 1195144 A G ZFAND2A Missense_Mutation p.V76A 0.42 deleterious(0) probably_damaging(0.996) TCGA-GN-A268-06 7 120385909 120385909 C T KCND2 Missense_Mutation p.H515Y 0.41 tolerated_low_confidence(1) benign(0.212) TCGA-GN-A268-06 7 120768517 120768517 G A CPED1 Missense_Mutation p.G462R 0.44 tolerated(0.56) benign(0.091) TCGA-GN-A268-06 7 120884389 120884389 G A CPED1 Silent p.R769R 0.51 TCGA-GN-A268-06 7 127670227 127670227 T C LRRC4 Missense_Mutation p.N156S 0.32 tolerated(0.12) benign(0.035) TCGA-GN-A268-06 7 139257875 139257875 T C HIPK2 Missense_Mutation p.Q1132R 0.77 tolerated(0.22) probably_damaging(0.943) TCGA-GN-A268-06 7 139257876 139257876 G A HIPK2 Nonsense_Mutation p.Q1132* 0.76 TCGA-GN-A268-06 7 140380881 140380881 C T ADCK2 Missense_Mutation p.P417S 0.46 tolerated(0.25) benign(0.263) TCGA-GN-A268-06 7 142021113 142021113 C T TRBV5-1 Silent p.I31I 0.41 TCGA-GN-A268-06 7 142045702 142045702 A G TRBV4-2 Missense_Mutation p.N77S 0.32 tolerated(0.07) benign(0.145) TCGA-GN-A268-06 7 142378967 142378967 C T MTRNR2L6 3'Flank 0.41 TCGA-GN-A268-06 7 143048705 143048705 G A CLCN1 Missense_Mutation p.G872R 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 7 143048706 143048706 G A CLCN1 Missense_Mutation p.G872E 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 7 154863337 154863337 C T HTR5A Missense_Mutation p.S243F 0.54 tolerated(0.05) benign(0.17) TCGA-GN-A268-06 7 18066766 18066766 G A PRPS1L1 Missense_Mutation p.R214C 0.53 deleterious(0.03) possibly_damaging(0.776) TCGA-GN-A268-06 7 18067105 18067105 C T PRPS1L1 Missense_Mutation p.D101N 0.41 deleterious(0.03) benign(0.029) TCGA-GN-A268-06 7 36616230 36616230 C T AOAH Nonsense_Mutation p.W324* 0.37 TCGA-GN-A268-06 7 40134079 40134079 G C CDK13 Missense_Mutation p.A1347P 0.40 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-GN-A268-06 7 44799042 44799042 A G ZMIZ2 Missense_Mutation p.T326A 0.33 tolerated(0.73) benign(0) TCGA-GN-A268-06 7 45222997 45222997 G A RAMP3 Missense_Mutation p.D145N 0.39 deleterious(0) probably_damaging(0.945) TCGA-GN-A268-06 7 70255400 70255400 C T AUTS2 Silent p.F1066F 0.53 TCGA-GN-A268-06 7 74306557 74306557 C T STAG3L2 RNA 0.64 TCGA-GN-A268-06 7 82453631 82453631 G A PCLO Silent p.S4839S 0.45 TCGA-GN-A268-06 7 82545616 82545616 G A PCLO Missense_Mutation p.P3896S 0.55 unknown(0) TCGA-GN-A268-06 7 82583350 82583350 C T PCLO Missense_Mutation p.E2307K 0.42 unknown(0) TCGA-GN-A268-06 7 82584948 82584948 G A PCLO Missense_Mutation p.S1774L 0.42 unknown(0) TCGA-GN-A268-06 7 86536995 86536995 G A KIAA1324L Missense_Mutation p.S850L 0.32 tolerated(0.12) benign(0.03) TCGA-GN-A268-06 7 99381680 99381680 T C CYP3A4 Missense_Mutation p.M9V 0.52 tolerated(0.64) benign(0) TCGA-GN-A268-06 7 99971893 99971893 C T PILRA Silent p.L97L 0.53 TCGA-GN-A268-06 8 110447480 110447480 C T PKHD1L1 Silent p.S1134S 0.48 TCGA-GN-A268-06 8 110456923 110456923 G A PKHD1L1 Missense_Mutation p.E1609K 0.53 tolerated(0.42) benign(0.006) TCGA-GN-A268-06 8 113299419 113299419 C T CSMD3 Missense_Mutation p.E3069K 0.47 deleterious(0.02) benign(0.063) TCGA-GN-A268-06 8 127569289 127569289 A T FAM84B Missense_Mutation p.C116S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-GN-A268-06 8 12957006 12957006 G A DLC1 Missense_Mutation p.P947L 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-GN-A268-06 8 133192441 133192441 C T KCNQ3 Nonsense_Mutation p.W247* 0.42 TCGA-GN-A268-06 8 2020445 2020445 C T MYOM2 Missense_Mutation p.P272S 0.46 tolerated(0.39) benign(0.184) TCGA-GN-A268-06 8 2020446 2020446 C T MYOM2 Missense_Mutation p.P272L 0.47 tolerated(0.52) benign(0.251) TCGA-GN-A268-06 8 37735068 37735068 A C RAB11FIP1 Missense_Mutation p.W125G 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 8 54141814 54141814 C T OPRK1 3'UTR 0.47 TCGA-GN-A268-06 8 57221525 57221525 G A SDR16C5 Missense_Mutation p.S176L 0.34 deleterious(0) probably_damaging(0.999) TCGA-GN-A268-06 8 62289311 62289311 C T CLVS1 Silent p.I201I 0.50 TCGA-GN-A268-06 8 73849501 73849501 C T KCNB2 Silent p.L637L 0.39 TCGA-GN-A268-06 9 105757649 105757649 C T CYLC2 5'UTR 0.62 TCGA-GN-A268-06 9 110248119 110248119 C T KLF4 Silent p.T451T 0.96 TCGA-GN-A268-06 9 125282217 125282217 C T OR1J4 Silent p.A266A 0.82 TCGA-GN-A268-06 9 130914544 130914544 C T LCN2 Silent p.I186I 0.77 TCGA-GN-A268-06 9 328055 328055 G A DOCK8 Missense_Mutation p.D310N 0.94 deleterious(0) possibly_damaging(0.694) TCGA-GN-A268-06 9 90503237 90503237 G A SPATA31E1 Missense_Mutation p.G1279R 0.88 tolerated(0.29) benign(0.002) TCGA-GN-A268-06 X 100650757 100650757 G A RPL36A 3'UTR 0.46 TCGA-GN-A268-06 X 101581458 101581458 C T NXF2 3'UTR 0.26 TCGA-GN-A268-06 X 103080312 103080312 T G RAB9B Missense_Mutation p.T135P 0.34 tolerated(0.2) benign(0.001) TCGA-GN-A268-06 X 105449843 105449843 G A MUM1L1 Missense_Mutation p.D140N 0.65 tolerated(0.62) benign(0.005) TCGA-GN-A268-06 X 107395032 107395032 G A ATG4A Missense_Mutation p.G321R 0.35 deleterious(0.02) probably_damaging(1) TCGA-GN-A268-06 X 111697828 111697828 C T ZCCHC16 5'UTR 0.58 TCGA-GN-A268-06 X 117707775 117707775 C T DOCK11 Missense_Mutation p.P395S 0.40 deleterious(0) probably_damaging(0.973) TCGA-GN-A268-06 X 129173251 129173251 C T BCORL1 Missense_Mutation p.L1538F 0.42 probably_damaging(1) TCGA-GN-A268-06 X 130678968 130678968 G A OR13H1 Silent p.R307R 0.44 TCGA-GN-A268-06 X 135428453 135428453 C T GPR112 Missense_Mutation p.P863L 0.47 tolerated(0.09) benign(0.005) TCGA-GN-A268-06 X 144909531 144909531 A G TMEM257 Nonstop_Mutation p.*112Wext*11 0.68 TCGA-GN-A268-06 X 150789427 150789427 T C PASD1 Missense_Mutation p.L78S 0.54 deleterious(0.04) benign(0.391) TCGA-GN-A268-06 X 150869307 150869307 G A PRRG3 Silent p.R166R 0.54 TCGA-GN-A268-06 X 154159039 154159039 A G F8 Missense_Mutation p.L1009S 0.35 tolerated(0.13) benign(0.007) TCGA-GN-A268-06 X 154185319 154185319 G A F8 Silent p.F555F 0.51 TCGA-GN-A268-06 X 26212034 26212034 G A MAGEB6 Missense_Mutation p.G24D 0.96 tolerated(0.5) benign(0.01) TCGA-GN-A268-06 X 26212939 26212939 G A MAGEB6 Missense_Mutation p.G326R 0.81 deleterious(0.03) benign(0.374) TCGA-GN-A268-06 X 3240932 3240932 C T MXRA5 Missense_Mutation p.E932K 0.95 tolerated(0.32) benign(0.006) TCGA-GN-A268-06 X 41586351 41586351 C T GPR82 Silent p.L24L 0.94 TCGA-GN-A268-06 X 51150762 51150762 C T CXorf67 Silent p.V298V 1.00 TCGA-GN-A268-06 X 53280174 53280174 G A IQSEC2 Silent p.S528S 0.93 TCGA-GN-A268-06 X 54011532 54011532 C T PHF8 Missense_Mutation p.R789Q 0.45 tolerated(0.44) benign(0.003) TCGA-GN-A268-06 X 54585023 54585023 C T GNL3L Missense_Mutation p.P534L 0.42 deleterious(0) benign(0.015) TCGA-GN-A268-06 X 70386992 70386992 G A NLGN3 Missense_Mutation p.V349M 0.58 deleterious(0) probably_damaging(1) TCGA-GN-A268-06 X 70523548 70523548 G A ITGB1BP2 Splice_Site p.X180_splice 0.42 TCGA-GN-A268-06 X 73068109 73068109 G A XIST RNA 0.44 TCGA-GN-A268-06 X 73961064 73961064 C T KIAA2022 Missense_Mutation p.E1110K 0.61 deleterious(0.01) benign(0.281) TCGA-GN-A268-06 X 73962141 73962141 C T KIAA2022 Missense_Mutation p.E751K 0.44 tolerated(0.06) benign(0.043) TCGA-GN-A268-06 X 75004186 75004186 C T MAGEE2 Missense_Mutation p.R234Q 0.49 tolerated(0.07) benign(0.027) TCGA-GN-A268-06 X 77244961 77244961 C T ATP7A Silent p.F281F 0.40 TCGA-GN-A268-06 X 79984278 79984278 G A BRWD3 Silent p.I453I 0.50 TCGA-GN-A268-06 X 80371822 80371822 C T HMGN5 Missense_Mutation p.D50N 0.25 tolerated(0.21) probably_damaging(0.945) TCGA-GN-A268-06 X 96724732 96724732 C T DIAPH2 Intron 0.30 TCGA-GN-A268-06 X 99936257 99936257 A G SYTL4 Missense_Mutation p.S509P 0.36 tolerated(0.19) benign(0.005) TCGA-GN-A269-01 10 102987042 102987042 G A LBX1 Silent p.I277I 0.23 TCGA-GN-A269-01 10 103792895 103792895 G A C10orf76 Missense_Mutation p.S65F 0.18 deleterious(0.02) benign(0.227) TCGA-GN-A269-01 10 105893391 105893391 C T WDR96 Missense_Mutation p.R1528K 0.12 tolerated(1) benign(0.011) TCGA-GN-A269-01 10 106207461 106207461 G A CCDC147 Silent p.K754K 0.14 TCGA-GN-A269-01 10 11504989 11504989 G A USP6NL Silent p.F663F 0.10 TCGA-GN-A269-01 10 120353838 120353839 - G PRLHR Frame_Shift_Ins p.A307Rfs*100 0.15 TCGA-GN-A269-01 10 13234455 13234455 T C MCM10 Silent p.I545I 0.23 TCGA-GN-A269-01 10 133930700 133930700 G A JAKMIP3 Silent p.K85K 0.15 TCGA-GN-A269-01 10 18823025 18823025 G A CACNB2 Missense_Mutation p.E359K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A269-01 10 20506496 20506496 C T PLXDC2 Missense_Mutation p.P422S 0.34 tolerated(0.25) benign(0.147) TCGA-GN-A269-01 10 28413025 28413025 C T MPP7 Missense_Mutation p.E184K 0.20 deleterious(0) probably_damaging(0.984) TCGA-GN-A269-01 10 30316491 30316491 A T KIAA1462 Missense_Mutation p.S862R 0.21 tolerated(0.37) benign(0.109) TCGA-GN-A269-01 10 35464558 35464558 C G CREM Intron 0.17 TCGA-GN-A269-01 10 37419225 37419225 C T ANKRD30A Silent p.L87L 0.12 TCGA-GN-A269-01 10 37430661 37430661 G A ANKRD30A Missense_Mutation p.G223E 0.22 tolerated_low_confidence(0.36) benign(0.003) TCGA-GN-A269-01 10 37486234 37486234 C T ANKRD30A Silent p.F824F 0.12 TCGA-GN-A269-01 10 48388012 48388012 C T RBP3 Missense_Mutation p.E956K 0.23 tolerated(0.05) benign(0.305) TCGA-GN-A269-01 10 49618124 49618124 G A MAPK8 Missense_Mutation p.M121I 0.20 tolerated(0.13) benign(0.016) TCGA-GN-A269-01 10 50859978 50859978 G A CHAT Silent p.G520G 0.16 TCGA-GN-A269-01 10 50946248 50946248 C T OGDHL Missense_Mutation p.D794N 0.13 tolerated(0.17) benign(0.314) TCGA-GN-A269-01 10 52389901 52389901 C T RP11-50E11.3 RNA 0.31 TCGA-GN-A269-01 10 53458193 53458193 G A CSTF2T Missense_Mutation p.R373C 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-GN-A269-01 10 61011222 61011222 G A FAM13C Intron 0.12 TCGA-GN-A269-01 10 61414328 61414328 G A SLC16A9 Silent p.F152F 0.15 TCGA-GN-A269-01 10 62038626 62038626 C T ANK3 Missense_Mutation p.G107E 0.15 probably_damaging(1) TCGA-GN-A269-01 10 6553016 6553016 C T PRKCQ Missense_Mutation p.V87M 0.13 tolerated(0.09) benign(0.053) TCGA-GN-A269-01 10 75104921 75104921 C T TTC18 Missense_Mutation p.V171I 0.21 tolerated(0.24) benign(0.003) TCGA-GN-A269-01 10 7615118 7615118 G A ITIH5 Silent p.I673I 0.23 TCGA-GN-A269-01 10 78870041 78870041 C T KCNMA1 Missense_Mutation p.E341K 0.12 tolerated(0.12) probably_damaging(0.954) TCGA-GN-A269-01 10 81930616 81930616 G A ANXA11 Silent p.I37I 0.18 TCGA-GN-A269-01 10 86017671 86017671 G A RGR Missense_Mutation p.R222K 0.13 tolerated(0.7) benign(0.175) TCGA-GN-A269-01 10 86017672 86017672 G A RGR Silent p.R222R 0.14 TCGA-GN-A269-01 10 90583082 90583082 G A ANKRD22 Silent p.I151I 0.17 TCGA-GN-A269-01 10 91196038 91196038 G A SLC16A12 Missense_Mutation p.A356V 0.12 deleterious(0.05) probably_damaging(0.99) TCGA-GN-A269-01 10 93668130 93668130 G A FGFBP3 Silent p.P199P 0.15 TCGA-GN-A269-01 10 95372445 95372445 C T PDE6C 5'UTR 0.17 TCGA-GN-A269-01 10 96540261 96540261 C T CYP2C19 Missense_Mutation p.P163S 0.16 deleterious(0.02) benign(0.247) TCGA-GN-A269-01 10 97960771 97960771 G A BLNK Silent p.P326P 0.20 TCGA-GN-A269-01 10 97976469 97976469 C T BLNK Missense_Mutation p.E183K 0.09 deleterious(0.03) benign(0.011) TCGA-GN-A269-01 10 98154973 98154973 T G TLL2 Missense_Mutation p.K566T 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A269-01 10 99696020 99696020 G A CRTAC1 Missense_Mutation p.R110W 0.16 tolerated(0.14) probably_damaging(0.975) TCGA-GN-A269-01 11 100061868 100061868 C T CNTN5 Missense_Mutation p.L531F 0.31 deleterious(0.02) probably_damaging(0.968) TCGA-GN-A269-01 11 101834560 101834560 C T KIAA1377 Missense_Mutation p.P932S 0.17 tolerated(0.47) possibly_damaging(0.49) TCGA-GN-A269-01 11 113222857 113222857 C T TTC12 Silent p.L458L 0.20 TCGA-GN-A269-01 11 117061423 117061423 C T SIDT2 Missense_Mutation p.H568Y 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A269-01 11 118239362 118239362 C T UBE4A Silent p.S46S 0.14 TCGA-GN-A269-01 11 118764404 118764404 G A CXCR5 Missense_Mutation p.A51T 0.14 tolerated(0.47) benign(0.005) TCGA-GN-A269-01 11 119243981 119243981 G A USP2 Silent p.S70S 0.15 TCGA-GN-A269-01 11 121028895 121028895 G A TECTA Missense_Mutation p.E1551K 0.19 tolerated(0.14) benign(0.058) TCGA-GN-A269-01 11 123847965 123847965 T G OR10S1 Missense_Mutation p.H145P 0.14 deleterious(0) benign(0.074) TCGA-GN-A269-01 11 124005635 124005635 C T VWA5A Missense_Mutation p.S418L 0.15 deleterious(0) possibly_damaging(0.566) TCGA-GN-A269-01 11 124013234 124013234 C T VWA5A Silent p.I703I 0.22 TCGA-GN-A269-01 11 124135730 124135730 G A OR8G5 Silent p.L336L 0.13 TCGA-GN-A269-01 11 124947412 124947412 G A SLC37A2 Missense_Mutation p.G101D 0.21 deleterious(0) probably_damaging(0.986) TCGA-GN-A269-01 11 129748408 129748408 G A NFRKB Missense_Mutation p.A497V 0.19 tolerated(0.21) unknown(0) TCGA-GN-A269-01 11 18231989 18231989 C T RP11-113D6.10 3'UTR 0.16 TCGA-GN-A269-01 11 18732255 18732255 C T IGSF22 Missense_Mutation p.R840Q 0.17 tolerated(0.35) benign(0.011) TCGA-GN-A269-01 11 18955376 18955376 C T MRGPRX1 Missense_Mutation p.R319K 0.10 tolerated(0.35) benign(0.003) TCGA-GN-A269-01 11 18955419 18955419 C T MRGPRX1 Missense_Mutation p.G305R 0.14 tolerated(0.07) benign(0.089) TCGA-GN-A269-01 11 18955953 18955953 G A MRGPRX1 Missense_Mutation p.P127S 0.16 deleterious(0) probably_damaging(0.994) TCGA-GN-A269-01 11 19077196 19077196 C T MRGPRX2 Missense_Mutation p.D252N 0.11 tolerated(0.61) benign(0.003) TCGA-GN-A269-01 11 27016142 27016142 C T FIBIN Silent p.P23P 0.12 TCGA-GN-A269-01 11 30902782 30902782 G T DCDC1 Missense_Mutation p.P1716Q 0.10 tolerated(0.38) possibly_damaging(0.904) TCGA-GN-A269-01 11 30953326 30953326 C T DCDC1 Silent p.R963R 0.16 TCGA-GN-A269-01 11 32724469 32724469 C T CCDC73 Missense_Mutation p.E77K 0.20 deleterious(0) possibly_damaging(0.624) TCGA-GN-A269-01 11 4388791 4388791 G A OR52B4 Silent p.S245S 0.18 TCGA-GN-A269-01 11 44073250 44073250 G A ACCSL Missense_Mutation p.M251I 0.21 tolerated(0.11) possibly_damaging(0.493) TCGA-GN-A269-01 11 46393044 46393044 G A DGKZ Missense_Mutation p.S405N 0.27 tolerated(1) benign(0.028) TCGA-GN-A269-01 11 4661144 4661144 T G OR51D1 Missense_Mutation p.F42V 0.14 tolerated(0.11) benign(0.119) TCGA-GN-A269-01 11 46894893 46894893 C T LRP4 Intron 0.15 TCGA-GN-A269-01 11 4790947 4790947 C T OR51F1 Silent p.R67R 0.30 TCGA-GN-A269-01 11 5221006 5221006 G A OR51V1 Missense_Mutation p.H309Y 0.25 deleterious(0) benign(0.065) TCGA-GN-A269-01 11 55136058 55136058 G A OR4A15 Silent p.A233A 0.14 TCGA-GN-A269-01 11 5530452 5530452 T C UBQLN3 Missense_Mutation p.S113G 0.19 tolerated(0.17) benign(0.005) TCGA-GN-A269-01 11 5530615 5530615 G A UBQLN3 Silent p.P58P 0.21 TCGA-GN-A269-01 11 55322113 55322113 C T OR4C15 Missense_Mutation p.P111S 0.13 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GN-A269-01 11 5776098 5776098 G A OR52N4 Missense_Mutation p.G43E 0.16 deleterious(0.01) probably_damaging(1) TCGA-GN-A269-01 11 57947181 57947181 G A OR9Q1 Missense_Mutation p.G89R 0.19 tolerated(0.69) benign(0.242) TCGA-GN-A269-01 11 57971483 57971483 G A OR1S2 Silent p.L57L 0.12 TCGA-GN-A269-01 11 58962779 58962779 C T DTX4 Silent p.S491S 0.32 TCGA-GN-A269-01 11 59245499 59245499 G A OR4D10 Missense_Mutation p.M199I 0.11 tolerated(0.2) benign(0.17) TCGA-GN-A269-01 11 60609774 60609774 C T CCDC86 Silent p.P59P 0.17 TCGA-GN-A269-01 11 61404369 61404369 C T RPLP0P2 RNA 0.24 TCGA-GN-A269-01 11 62344694 62344694 C T TUT1 Silent p.V448V 0.18 TCGA-GN-A269-01 11 62563933 62563933 G A NXF1 Nonsense_Mutation p.R429* 0.27 TCGA-GN-A269-01 11 62563934 62563934 G T NXF1 Silent p.A428A 0.26 TCGA-GN-A269-01 11 63057858 63057858 G A SLC22A10 Missense_Mutation p.R74K 0.10 tolerated(0.1) benign(0.13) TCGA-GN-A269-01 11 63276341 63276341 C T LGALS12 Missense_Mutation p.H107Y 0.23 tolerated(0.39) benign(0.395) TCGA-GN-A269-01 11 64888410 64888410 G A FAU Intron 0.20 TCGA-GN-A269-01 11 64940289 64940289 C T SPDYC Silent p.S217S 0.26 TCGA-GN-A269-01 11 6519800 6519800 C T DNHD1 Nonsense_Mutation p.Q119* 0.11 TCGA-GN-A269-01 11 65273128 65273128 T G MALAT1 RNA 0.17 TCGA-GN-A269-01 11 65298163 65298163 C T SCYL1 Missense_Mutation p.P305S 0.24 deleterious(0) probably_damaging(0.933) TCGA-GN-A269-01 11 66030323 66030323 G A KLC2 Missense_Mutation p.G190R 0.13 deleterious(0) probably_damaging(0.974) TCGA-GN-A269-01 11 68855350 68855350 C T TPCN2 Silent p.L730L 0.14 TCGA-GN-A269-01 11 6977643 6977643 C T ZNF215 Nonsense_Mutation p.R479* 0.14 TCGA-GN-A269-01 11 70228206 70228206 G A PPFIA1 Missense_Mutation p.G1188E 0.12 tolerated(0.1) benign(0.394) TCGA-GN-A269-01 11 71276910 71276910 G A KRTAP5-10 Missense_Mutation p.G93S 0.20 unknown(0) TCGA-GN-A269-01 11 73717239 73717239 C T UCP3 Silent p.Q104Q 0.17 TCGA-GN-A269-01 11 74717525 74717525 C T NEU3 Silent p.F458F 0.20 TCGA-GN-A269-01 11 75150947 75150947 G A GDPD5 Silent p.I511I 0.13 TCGA-GN-A269-01 11 76982231 76982231 A C GDPD4 Missense_Mutation p.V115G 0.26 deleterious(0) possibly_damaging(0.578) TCGA-GN-A269-01 11 78413133 78413133 C T TENM4 Missense_Mutation p.A1509T 0.29 tolerated(0.08) benign(0.356) TCGA-GN-A269-01 11 78413134 78413134 C T TENM4 Silent p.G1508G 0.29 TCGA-GN-A269-01 11 78437253 78437253 C T TENM4 Missense_Mutation p.E1141K 0.17 deleterious(0) probably_damaging(0.98) TCGA-GN-A269-01 11 78440604 78440604 G A TENM4 Silent p.L1075L 0.14 TCGA-GN-A269-01 11 8413912 8413912 A G STK33 3'UTR 0.19 TCGA-GN-A269-01 11 86157451 86157451 C T ME3 Missense_Mutation p.G487R 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 11 89909215 89909215 T G NAALAD2 Silent p.R526R 0.15 TCGA-GN-A269-01 11 92086457 92086457 C T FAT3 Silent p.V393V 0.18 TCGA-GN-A269-01 11 92616244 92616244 C T FAT3 Missense_Mutation p.P4208S 0.19 benign(0.021) TCGA-GN-A269-01 11 94731988 94731988 G T KDM4D Silent p.S484S 0.08 TCGA-GN-A269-01 11 985475 985475 C T AP2A2 Silent p.T285T 0.10 TCGA-GN-A269-01 12 100904774 100904774 G A NR1H4 Missense_Mutation p.E110K 0.11 tolerated(0.1) benign(0.042) TCGA-GN-A269-01 12 101493391 101493391 G A ANO4 Missense_Mutation p.R646Q 0.16 tolerated(0.06) benign(0.064) TCGA-GN-A269-01 12 101493497 101493497 G A ANO4 Missense_Mutation p.M681I 0.18 deleterious(0.01) possibly_damaging(0.46) TCGA-GN-A269-01 12 101603573 101603573 G A SLC5A8 Silent p.F18F 0.12 TCGA-GN-A269-01 12 10777432 10777432 G A STYK1 Silent p.F248F 0.16 TCGA-GN-A269-01 12 108029142 108029142 C T BTBD11 Silent p.I904I 0.12 TCGA-GN-A269-01 12 109677704 109677704 G A ACACB Missense_Mutation p.V1578M 0.16 deleterious(0) probably_damaging(0.962) TCGA-GN-A269-01 12 12022745 12022745 C T ETV6 Missense_Mutation p.S284F 0.17 tolerated(0.08) possibly_damaging(0.553) TCGA-GN-A269-01 12 12022746 12022746 C T ETV6 Silent p.S284S 0.15 TCGA-GN-A269-01 12 12279643 12279643 A C LRP6 Missense_Mutation p.L1432V 0.15 tolerated(0.59) benign(0.179) TCGA-GN-A269-01 12 124337761 124337761 G A DNAH10 Silent p.A1982A 0.45 TCGA-GN-A269-01 12 126138387 126138387 G A TMEM132B Missense_Mutation p.E790K 0.25 tolerated(0.08) benign(0.115) TCGA-GN-A269-01 12 133212577 133212577 T C POLE Silent p.T1904T 0.20 TCGA-GN-A269-01 12 133385019 133385019 G A GOLGA3 Silent p.F212F 0.17 TCGA-GN-A269-01 12 13715915 13715915 C T GRIN2B Silent p.P1419P 0.19 TCGA-GN-A269-01 12 15262170 15262170 C T RERG Silent p.E158E 0.25 TCGA-GN-A269-01 12 20833104 20833104 C T PDE3A Nonsense_Mutation p.Q1109* 0.18 TCGA-GN-A269-01 12 20905384 20905384 A T SLCO1C1 Missense_Mutation p.I722F 0.19 tolerated_low_confidence(0.07) benign(0.005) TCGA-GN-A269-01 12 21968825 21968825 G A ABCC9 Missense_Mutation p.P1299S 0.23 tolerated(0.19) benign(0.001) TCGA-GN-A269-01 12 33031163 33031163 G A PKP2 Silent p.Y217Y 0.15 TCGA-GN-A269-01 12 44781975 44781975 C T TMEM117 Silent p.T355T 0.19 TCGA-GN-A269-01 12 47181792 47181792 C T SLC38A4 Missense_Mutation p.G78E 0.15 deleterious(0) probably_damaging(0.995) TCGA-GN-A269-01 12 4737612 4737612 G C AKAP3 Missense_Mutation p.N152K 0.21 tolerated(0.17) benign(0.006) TCGA-GN-A269-01 12 4829912 4829912 C T GALNT8 Silent p.L23L 0.20 TCGA-GN-A269-01 12 4829980 4829980 C T GALNT8 Missense_Mutation p.P46L 0.21 tolerated(0.13) benign(0.055) TCGA-GN-A269-01 12 52647020 52647020 C T KRT7 3'Flank 0.30 TCGA-GN-A269-01 12 52845481 52845481 G A KRT6B Missense_Mutation p.P128S 0.05 deleterious(0.04) unknown(0) TCGA-GN-A269-01 12 53189556 53189556 C T KRT3 Missense_Mutation p.G91S 0.14 tolerated(0.11) unknown(0) TCGA-GN-A269-01 12 54913059 54913059 G A NCKAP1L Missense_Mutation p.R523Q 0.16 tolerated(0.05) benign(0.003) TCGA-GN-A269-01 12 55759353 55759353 C T OR6C75 Silent p.I153I 0.14 TCGA-GN-A269-01 12 56094741 56094741 G A ITGA7 Silent p.A204A 0.19 TCGA-GN-A269-01 12 56094742 56094742 G A ITGA7 Missense_Mutation p.A204V 0.19 deleterious(0.02) benign(0.341) TCGA-GN-A269-01 12 56721365 56721365 G A PAN2 Silent p.A234A 0.20 TCGA-GN-A269-01 12 57570871 57570871 G A LRP1 Missense_Mutation p.E1347K 0.18 possibly_damaging(0.636) TCGA-GN-A269-01 12 57628077 57628077 C T SHMT2 Missense_Mutation p.A483V 0.13 tolerated(0.31) benign(0.01) TCGA-GN-A269-01 12 57628078 57628078 C T SHMT2 Silent p.A483A 0.13 TCGA-GN-A269-01 12 60168885 60168885 C T SLC16A7 Missense_Mutation p.P270L 0.19 deleterious(0.03) benign(0.139) TCGA-GN-A269-01 12 62790089 62790089 C T USP15 Missense_Mutation p.S862L 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A269-01 12 6425508 6425508 G A PLEKHG6 Missense_Mutation p.E232K 0.25 tolerated(0.2) benign(0.008) TCGA-GN-A269-01 12 69265610 69265610 C T CPM Missense_Mutation p.G129R 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.30 deleterious(0.02) benign(0.145) TCGA-GN-A269-01 12 70960386 70960386 C T PTPRB Missense_Mutation p.D1245N 0.20 tolerated(0.35) benign(0.031) TCGA-GN-A269-01 12 7177170 7177170 C T C1S Missense_Mutation p.P428S 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-GN-A269-01 12 72092798 72092798 C T TMEM19 Silent p.A252A 0.10 TCGA-GN-A269-01 12 7288115 7288115 C T CLSTN3 Silent p.F192F 0.14 TCGA-GN-A269-01 12 73012725 73012725 G A TRHDE Silent p.E747E 0.16 TCGA-GN-A269-01 12 7475053 7475053 G A ACSM4 Silent p.G347G 0.14 TCGA-GN-A269-01 12 7526091 7526091 G A CD163L1 Silent p.G1185G 0.24 TCGA-GN-A269-01 12 7640083 7640083 C T CD163 Missense_Mutation p.G641E 0.22 tolerated(0.09) benign(0.35) TCGA-GN-A269-01 12 78598739 78598739 G A NAV3 Missense_Mutation p.E2265K 0.16 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 12 86373762 86373762 A G MGAT4C Missense_Mutation p.Y248H 0.14 tolerated(0.54) possibly_damaging(0.82) TCGA-GN-A269-01 12 86373763 86373763 A G MGAT4C Silent p.T247T 0.15 TCGA-GN-A269-01 12 8998064 8998064 G A A2ML1 Missense_Mutation p.M501I 0.20 tolerated(0.43) benign(0.008) TCGA-GN-A269-01 12 95397471 95397471 C T NDUFA12 5'UTR 0.16 TCGA-GN-A269-01 12 95867845 95867845 C T METAP2 5'UTR 0.29 TCGA-GN-A269-01 12 99201651 99201651 G A ANKS1B Intron 0.17 TCGA-GN-A269-01 13 110825088 110825088 G A COL4A1 Missense_Mutation p.P1179S 0.25 possibly_damaging(0.888) TCGA-GN-A269-01 13 110830467 110830467 G A COL4A1 Missense_Mutation p.S857L 0.30 benign(0.046) TCGA-GN-A269-01 13 113439572 113439572 G A ATP11A Splice_Site p.X54_splice 0.34 TCGA-GN-A269-01 13 113516853 113516853 C T ATP11A Silent p.F985F 0.31 TCGA-GN-A269-01 13 23913856 23913856 G A SACS Missense_Mutation p.P1387S 0.19 benign(0.242) TCGA-GN-A269-01 13 35758160 35758160 C T NBEA Missense_Mutation p.L1627F 0.15 tolerated_low_confidence(0.21) benign(0.011) TCGA-GN-A269-01 13 37011885 37011885 G A CCNA1 Missense_Mutation p.M139I 0.18 tolerated(0.2) benign(0.002) TCGA-GN-A269-01 13 42873637 42873637 C T AKAP11 Missense_Mutation p.S252L 0.24 tolerated(1) benign(0.001) TCGA-GN-A269-01 13 43935540 43935540 C T ENOX1 Missense_Mutation p.G86E 0.12 deleterious(0) probably_damaging(0.996) TCGA-GN-A269-01 13 46358027 46358027 G A SIAH3 Missense_Mutation p.P101S 0.40 tolerated(0.32) benign(0.037) TCGA-GN-A269-01 13 46554046 46554046 C T ZC3H13 Missense_Mutation p.R605K 0.16 probably_damaging(0.97) TCGA-GN-A269-01 13 76112025 76112025 C T COMMD6 5'Flank 0.13 TCGA-GN-A269-01 13 78320899 78320899 C T SLAIN1 Silent p.S225S 0.31 TCGA-GN-A269-01 13 86368261 86368261 C T SLITRK6 Missense_Mutation p.E795K 0.33 tolerated(0.1) benign(0.08) TCGA-GN-A269-01 13 92408644 92408644 C T GPC5 Missense_Mutation p.P417L 0.16 tolerated(0.71) benign(0.019) TCGA-GN-A269-01 13 95673825 95673825 G A ABCC4 3'UTR 0.24 TCGA-GN-A269-01 14 101512845 101512845 C T MIR487B RNA 0.27 TCGA-GN-A269-01 14 105408105 105408105 G A AHNAK2 Silent p.L4561L 0.17 TCGA-GN-A269-01 14 106586347 106586347 G A IGHV3-13 Silent p.F46F 0.16 TCGA-GN-A269-01 14 106780818 106780818 C T IGHV4-28 Splice_Site p.X16_splice 0.35 TCGA-GN-A269-01 14 107179260 107179260 C T IGHV2-70 Translation_Start_Site p.M1? 0.10 deleterious(0) possibly_damaging(0.892) TCGA-GN-A269-01 14 20344762 20344762 C T OR4K2 Silent p.I112I 0.28 TCGA-GN-A269-01 14 20586023 20586023 G A OR4K17 Missense_Mutation p.R153K 0.13 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 14 22386380 22386380 C T TRAV13-2 5'UTR 0.18 TCGA-GN-A269-01 14 23890220 23890220 C T MYH7 Missense_Mutation p.E1095K 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A269-01 14 24030569 24030569 C T AP1G2 Silent p.L643L 0.19 TCGA-GN-A269-01 14 24534423 24534423 G A LRRC16B Missense_Mutation p.E1113K 0.14 tolerated(0.47) unknown(0) TCGA-GN-A269-01 14 31354664 31354664 C T COCH Silent p.I266I 0.18 TCGA-GN-A269-01 14 33293746 33293746 G A AKAP6 Missense_Mutation p.E2243K 0.28 deleterious_low_confidence(0.01) benign(0.006) TCGA-GN-A269-01 14 50649216 50649216 G A SOS2 Missense_Mutation p.P275S 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A269-01 14 65019549 65019549 C T PPP1R36 Missense_Mutation p.S51F 0.34 tolerated(0.1) benign(0.121) TCGA-GN-A269-01 14 68353891 68353891 G A RAD51B Silent p.L242L 0.20 TCGA-GN-A269-01 14 70238028 70238028 C T SRSF5 Silent p.S223S 0.32 TCGA-GN-A269-01 14 72139246 72139246 C T SIPA1L1 Missense_Mutation p.T1004I 0.30 deleterious(0) probably_damaging(0.991) TCGA-GN-A269-01 14 75266069 75266069 C T YLPM1 Nonsense_Mutation p.R1357* 0.20 TCGA-GN-A269-01 14 77327179 77327179 C T C14orf166B Silent p.I416I 0.14 TCGA-GN-A269-01 14 86089039 86089039 G A FLRT2 Missense_Mutation p.S394N 0.24 tolerated(0.53) benign(0) TCGA-GN-A269-01 14 92264212 92264212 C T TC2N Missense_Mutation p.D258N 0.18 deleterious(0.04) benign(0.012) TCGA-GN-A269-01 14 93398956 93398956 G T CHGA Missense_Mutation p.K350N 0.27 deleterious(0) possibly_damaging(0.776) TCGA-GN-A269-01 14 94046605 94046605 C T UNC79 Silent p.T671T 0.38 TCGA-GN-A269-01 14 94084694 94084694 G A UNC79 Missense_Mutation p.E1284K 0.27 deleterious_low_confidence(0.01) benign(0.184) TCGA-GN-A269-01 15 25320990 25320990 C T SNORD116-9 3'Flank 0.31 TCGA-GN-A269-01 15 25449558 25449558 C T SNORD115-19 RNA 0.14 TCGA-GN-A269-01 15 26793211 26793211 C T GABRB3 Missense_Mutation p.G384D 0.15 tolerated(0.17) benign(0.004) TCGA-GN-A269-01 15 42129028 42129028 C T JMJD7 Missense_Mutation p.P251L 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 15 43873490 43873490 G A PPIP5K1 Nonsense_Mutation p.R292* 0.10 TCGA-GN-A269-01 15 45409845 45409845 C T DUOXA1 Silent p.S440S 0.15 TCGA-GN-A269-01 15 49509510 49509510 C T GALK2 Missense_Mutation p.P89L 0.09 tolerated(0.39) benign(0.001) TCGA-GN-A269-01 15 50535170 50535170 C T HDC Missense_Mutation p.E426K 0.20 tolerated(0.35) benign(0.132) TCGA-GN-A269-01 15 50901824 50901824 A T TRPM7 Missense_Mutation p.F845Y 0.15 deleterious(0.03) possibly_damaging(0.908) TCGA-GN-A269-01 15 51397368 51397368 C T TNFAIP8L3 Silent p.G2G 0.21 TCGA-GN-A269-01 15 58258011 58258011 G A ALDH1A2 Silent p.I271I 0.14 TCGA-GN-A269-01 15 65040755 65040755 C A RBPMS2 Missense_Mutation p.G144W 0.24 tolerated(0.17) probably_damaging(0.947) TCGA-GN-A269-01 15 65140806 65140806 C A AC069368.3 Silent p.A9A 0.21 TCGA-GN-A269-01 15 65676746 65676746 C T IGDCC4 Silent p.R1118R 0.15 TCGA-GN-A269-01 15 65676747 65676747 C T IGDCC4 Missense_Mutation p.R1118K 0.13 tolerated(0.36) benign(0.009) TCGA-GN-A269-01 15 65917969 65917969 C T SLC24A1 Silent p.F517F 0.18 TCGA-GN-A269-01 15 69113093 69113093 C T ANP32A 5'UTR 0.28 TCGA-GN-A269-01 15 72954598 72954598 C T GOLGA6B Missense_Mutation p.P285S 0.30 deleterious(0) possibly_damaging(0.803) TCGA-GN-A269-01 15 75684670 75684670 G C SIN3A Missense_Mutation p.R922G 0.15 tolerated(0.08) benign(0.359) TCGA-GN-A269-01 15 83935648 83935648 G A BNC1 Silent p.L125L 0.16 TCGA-GN-A269-01 15 89807213 89807213 G A FANCI Missense_Mutation p.E209K 0.21 deleterious(0) probably_damaging(0.996) TCGA-GN-A269-01 15 91496986 91496986 C T UNC45A 3'UTR 0.23 TCGA-GN-A269-01 15 94928753 94928753 C T MCTP2 Missense_Mutation p.S596F 0.18 deleterious(0.01) possibly_damaging(0.882) TCGA-GN-A269-01 15 95013586 95013586 C T MCTP2 Silent p.F795F 0.14 TCGA-GN-A269-01 16 10527420 10527420 G A ATF7IP2 Missense_Mutation p.E292K 0.13 deleterious(0) possibly_damaging(0.9) TCGA-GN-A269-01 16 1500570 1500570 G A CLCN7 Silent p.I515I 0.13 TCGA-GN-A269-01 16 1551694 1551694 C T TELO2 Silent p.P464P 0.13 TCGA-GN-A269-01 16 15729671 15729671 G A KIAA0430 Missense_Mutation p.P225S 0.11 tolerated_low_confidence(0.12) benign(0.388) TCGA-GN-A269-01 16 15841531 15841531 G A MYH11 Silent p.F776F 0.12 TCGA-GN-A269-01 16 19236127 19236127 G A SYT17 Missense_Mutation p.E399K 0.16 deleterious(0) possibly_damaging(0.626) TCGA-GN-A269-01 16 20335417 20335417 C T GP2 Missense_Mutation p.D86N 0.20 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 16 24366154 24366154 G A CACNG3 Missense_Mutation p.R99Q 0.08 deleterious(0.01) possibly_damaging(0.871) TCGA-GN-A269-01 16 24373037 24373037 C T CACNG3 Silent p.L267L 0.17 TCGA-GN-A269-01 16 30991855 30991855 C T SETD1A Silent p.P1486P 0.15 TCGA-GN-A269-01 16 30999285 30999285 C T HSD3B7 Silent p.F297F 0.18 TCGA-GN-A269-01 16 321083 321083 C T RGS11 Silent p.T293T 0.10 TCGA-GN-A269-01 16 3254744 3254744 C T OR1F1 Silent p.L166L 0.19 TCGA-GN-A269-01 16 3255137 3255137 G A OR1F1 Silent p.L297L 0.23 TCGA-GN-A269-01 16 3639602 3639602 G A SLX4 Missense_Mutation p.P1346L 0.14 tolerated(0.08) possibly_damaging(0.758) TCGA-GN-A269-01 16 48248827 48248827 G A ABCC11 Missense_Mutation p.H405Y 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 16 57159813 57159813 C T CPNE2 Silent p.D323D 0.29 TCGA-GN-A269-01 16 66436825 66436825 G A CDH5 Missense_Mutation p.G703E 0.35 tolerated(0.26) possibly_damaging(0.764) TCGA-GN-A269-01 16 70908731 70908731 G A HYDIN Missense_Mutation p.P3550L 0.27 probably_damaging(0.958) TCGA-GN-A269-01 16 71212830 71212830 C T HYDIN Splice_Site p.X127_splice 0.23 TCGA-GN-A269-01 16 72158669 72158669 C T PMFBP1 Silent p.K862K 0.31 TCGA-GN-A269-01 16 75186804 75186804 C T ZFP1 Intron 0.08 TCGA-GN-A269-01 16 80654830 80654830 G A CDYL2 Silent p.I279I 0.20 TCGA-GN-A269-01 16 85832894 85832894 C T EMC8 Missense_Mutation p.G3E 0.25 tolerated(1) benign(0.002) TCGA-GN-A269-01 16 9857498 9857498 C T GRIN2A Silent p.E1301E 0.10 TCGA-GN-A269-01 17 10300222 10300222 C T MYH8 Silent p.T1420T 0.19 TCGA-GN-A269-01 17 10447086 10447086 G A MYH2 Missense_Mutation p.P228L 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 17 11511499 11511499 G A DNAH9 Missense_Mutation p.M157I 0.17 benign(0.001) TCGA-GN-A269-01 17 11642268 11642268 G A DNAH9 Silent p.L1962L 0.10 TCGA-GN-A269-01 17 11687739 11687739 C T DNAH9 Silent p.I2648I 0.16 TCGA-GN-A269-01 17 12656366 12656366 G A MYOCD Silent p.V587V 0.13 TCGA-GN-A269-01 17 15516116 15516116 C T RP11-385D13.1 Missense_Mutation p.D651N 0.13 tolerated_low_confidence(0.35) possibly_damaging(0.619) TCGA-GN-A269-01 17 17720736 17720736 C T SREBF1 Silent p.R510R 0.23 TCGA-GN-A269-01 17 18882883 18882883 C T FAM83G Missense_Mutation p.R265Q 0.18 deleterious(0) probably_damaging(0.989) TCGA-GN-A269-01 17 25969334 25969334 C T LGALS9 Missense_Mutation p.S135F 0.13 deleterious(0) probably_damaging(0.997) TCGA-GN-A269-01 17 26955507 26955507 G A KIAA0100 Missense_Mutation p.S1457F 0.20 deleterious(0.04) benign(0.418) TCGA-GN-A269-01 17 27835062 27835062 T C TAOK1 Missense_Mutation p.L496S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A269-01 17 29653263 29653263 C T NF1 Missense_Mutation p.S1754F 0.21 tolerated(0.09) possibly_damaging(0.692) TCGA-GN-A269-01 17 33464057 33464057 G A NLE1 Missense_Mutation p.S264F 0.15 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 17 34079577 34079577 G A GAS2L2 Missense_Mutation p.S98F 0.20 tolerated(0.35) benign(0.056) TCGA-GN-A269-01 17 34311406 34311406 C T CCL14 Silent p.E70E 0.16 TCGA-GN-A269-01 17 35902537 35902537 G A SYNRG Silent p.L913L 0.09 TCGA-GN-A269-01 17 38151308 38151308 C T PSMD3 Silent p.F361F 0.18 TCGA-GN-A269-01 17 39535632 39535632 C T KRT34 Silent p.E325E 0.10 TCGA-GN-A269-01 17 42275002 42275002 A G ATXN7L3 Silent p.L50L 0.15 TCGA-GN-A269-01 17 42335031 42335031 A C SLC4A1 Missense_Mutation p.F476C 0.16 deleterious(0.01) probably_damaging(0.948) TCGA-GN-A269-01 17 42941122 42941122 G A EFTUD2 Silent p.I438I 0.18 TCGA-GN-A269-01 17 43037509 43037509 G A C1QL1 3'UTR 0.25 TCGA-GN-A269-01 17 4498512 4498512 G A SMTNL2 Silent p.Q293Q 0.34 TCGA-GN-A269-01 17 45377887 45377887 G A ITGB3 Missense_Mutation p.D653N 0.21 deleterious(0.03) benign(0.003) TCGA-GN-A269-01 17 45456594 45456594 G A EFCAB13 Silent p.K519K 0.12 TCGA-GN-A269-01 17 4937955 4937955 C T SLC52A1 5'UTR 0.18 TCGA-GN-A269-01 17 50149681 50149681 G A CA10 Missense_Mutation p.P45L 0.14 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-GN-A269-01 17 55078337 55078337 C T SCPEP1 Silent p.L372L 0.15 TCGA-GN-A269-01 17 56386606 56386606 C T BZRAP1 Missense_Mutation p.E1343K 0.17 tolerated(0.16) benign(0.194) TCGA-GN-A269-01 17 56540236 56540236 T G HSF5 Missense_Mutation p.Q483H 0.21 deleterious(0) possibly_damaging(0.789) TCGA-GN-A269-01 17 57955542 57955542 G A TUBD1 Missense_Mutation p.L231F 0.18 deleterious(0.01) benign(0.382) TCGA-GN-A269-01 17 60005289 60005289 C T INTS2 Intron 0.19 TCGA-GN-A269-01 17 60814083 60814083 C T MARCH10 Silent p.R382R 0.23 TCGA-GN-A269-01 17 61498822 61498822 T A TANC2 Missense_Mutation p.S1827T 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.621) TCGA-GN-A269-01 17 61958081 61958081 C T GH2 Silent p.R169R 0.20 TCGA-GN-A269-01 17 65850295 65850295 G A BPTF Missense_Mutation p.E285K 0.21 probably_damaging(0.996) TCGA-GN-A269-01 17 71281578 71281578 G A CDC42EP4 Silent p.I354I 0.23 TCGA-GN-A269-01 17 73945810 73945810 G A ACOX1 Silent p.L489L 0.19 TCGA-GN-A269-01 17 7400791 7400791 C T POLR2A Silent p.F312F 0.18 TCGA-GN-A269-01 17 7460711 7460711 C A TNFSF12 Intron 0.12 TCGA-GN-A269-01 17 74714855 74714855 A C JMJD6 Missense_Mutation p.S390A 0.06 tolerated(0.35) benign(0.037) TCGA-GN-A269-01 17 74714856 74714856 G A JMJD6 Silent p.T389T 0.07 TCGA-GN-A269-01 17 76525692 76525692 C T DNAH17 Silent p.V1123V 0.16 TCGA-GN-A269-01 17 76570873 76570873 C T DNAH17 Silent p.K89K 0.15 TCGA-GN-A269-01 17 79249826 79249826 G A SLC38A10 Silent p.F285F 0.19 TCGA-GN-A269-01 17 79287683 79287683 C T TMEM105 Missense_Mutation p.R53K 0.18 tolerated_low_confidence(0.62) benign(0.002) TCGA-GN-A269-01 17 7983926 7983926 G A AC129492.6 3'UTR 0.14 TCGA-GN-A269-01 17 9684798 9684798 C T DHRS7C Splice_Site p.X89_splice 0.22 TCGA-GN-A269-01 18 12674678 12674678 A C CEP76 Missense_Mutation p.F566L 0.25 tolerated(1) benign(0) TCGA-GN-A269-01 18 13438253 13438253 C T LDLRAD4 Silent p.F17F 0.18 TCGA-GN-A269-01 18 18588072 18588072 G A ROCK1 Silent p.Y498Y 0.25 TCGA-GN-A269-01 18 21487612 21487612 C T LAMA3 Missense_Mutation p.L2273F 0.15 probably_damaging(1) TCGA-GN-A269-01 18 24081143 24081143 G A KCTD1 Silent p.I19I 0.16 TCGA-GN-A269-01 18 28710560 28710560 G A DSC1 Missense_Mutation p.R868W 0.15 deleterious(0) probably_damaging(0.939) TCGA-GN-A269-01 18 28966764 28966764 G A DSG4 Silent p.K66K 0.09 TCGA-GN-A269-01 18 34647216 34647216 C T KIAA1328 Missense_Mutation p.R314C 0.11 tolerated(0.14) benign(0.001) TCGA-GN-A269-01 18 48333212 48333212 C T MRO Nonsense_Mutation p.W50* 0.14 TCGA-GN-A269-01 18 50278616 50278616 G C DCC Missense_Mutation p.G95A 0.10 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 18 56246599 56246599 C T ALPK2 Missense_Mutation p.R470K 0.18 deleterious(0.02) possibly_damaging(0.828) TCGA-GN-A269-01 18 59483693 59483693 C T RNF152 Missense_Mutation p.E2K 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-GN-A269-01 18 5969550 5969550 C T L3MBTL4 Missense_Mutation p.E495K 0.35 tolerated(0.55) benign(0.001) TCGA-GN-A269-01 18 5969551 5969551 C T L3MBTL4 Silent p.V494V 0.34 TCGA-GN-A269-01 18 61570459 61570459 G A SERPINB2 Missense_Mutation p.A390T 0.21 deleterious(0.01) probably_damaging(1) TCGA-GN-A269-01 18 6311567 6311567 G A L3MBTL4 Nonsense_Mutation p.Q20* 0.18 TCGA-GN-A269-01 18 66721456 66721456 T C CCDC102B 3'UTR 0.33 TCGA-GN-A269-01 18 67742728 67742728 G A RTTN Missense_Mutation p.P1475L 0.20 deleterious(0) probably_damaging(0.976) TCGA-GN-A269-01 19 10157494 10157494 C T C3P1 RNA 0.22 TCGA-GN-A269-01 19 10403726 10403726 G A ICAM5 Silent p.E423E 0.18 TCGA-GN-A269-01 19 10464889 10464889 A G TYK2 Silent p.L913L 0.25 TCGA-GN-A269-01 19 1278918 1278918 G A C19orf24 3'UTR 0.25 TCGA-GN-A269-01 19 13386753 13386753 G A CACNA1A Silent p.L1300L 0.19 TCGA-GN-A269-01 19 15918755 15918755 G A OR10H1 Silent p.F31F 0.17 TCGA-GN-A269-01 19 16918857 16918857 G A NWD1 Silent p.K1399K 0.10 TCGA-GN-A269-01 19 16918858 16918858 G A NWD1 Missense_Mutation p.E1400K 0.10 deleterious(0.03) possibly_damaging(0.627) TCGA-GN-A269-01 19 16918894 16918894 C T NWD1 Silent p.L1412L 0.13 TCGA-GN-A269-01 19 1823627 1823627 G A REXO1 Missense_Mutation p.S725F 0.29 deleterious(0) possibly_damaging(0.827) TCGA-GN-A269-01 19 19626945 19626945 C T NDUFA13 5'UTR 0.14 TCGA-GN-A269-01 19 22940113 22940113 G A ZNF99 3'Flank 0.24 TCGA-GN-A269-01 19 31039149 31039149 G A ZNF536 Missense_Mutation p.G875S 0.19 tolerated(0.27) benign(0.011) TCGA-GN-A269-01 19 36054383 36054383 C T ATP4A Missense_Mutation p.G20E 0.21 tolerated(1) probably_damaging(0.993) TCGA-GN-A269-01 19 39001196 39001196 C T RYR1 Silent p.F2997F 0.23 TCGA-GN-A269-01 19 3941164 3941164 G A NMRK2 Missense_Mutation p.G164D 0.19 tolerated(0.25) benign(0.013) TCGA-GN-A269-01 19 41211268 41211268 C T ADCK4 Missense_Mutation p.G151E 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 19 41601665 41601665 G A CYP2A13 Missense_Mutation p.G435E 0.15 deleterious(0) probably_damaging(0.987) TCGA-GN-A269-01 19 41916585 41916585 A T BCKDHA Missense_Mutation p.K51M 0.17 tolerated(0.08) benign(0.198) TCGA-GN-A269-01 19 4267768 4267768 C T CCDC94 Missense_Mutation p.P286S 0.23 tolerated(0.43) benign(0.003) TCGA-GN-A269-01 19 43439767 43439767 C T PSG7 Silent p.R73R 0.20 TCGA-GN-A269-01 19 43689011 43689011 C T PSG5 Missense_Mutation p.G118E 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 19 43690559 43690559 G A PSG5 5'UTR 0.14 TCGA-GN-A269-01 19 46834519 46834519 C T HIF3A Missense_Mutation p.P607S 0.23 tolerated_low_confidence(0.28) probably_damaging(0.998) TCGA-GN-A269-01 19 48954323 48954323 C T GRWD1 Silent p.I286I 0.18 TCGA-GN-A269-01 19 50657857 50657857 G A IZUMO2 Missense_Mutation p.S208L 0.14 deleterious(0) possibly_damaging(0.519) TCGA-GN-A269-01 19 51503822 51503822 C T KLK8 Missense_Mutation p.E75K 0.09 deleterious(0.03) possibly_damaging(0.571) TCGA-GN-A269-01 19 51771825 51771825 G A SIGLECL1 Missense_Mutation p.E190K 0.14 tolerated(0.16) benign(0.008) TCGA-GN-A269-01 19 51918821 51918821 C T SIGLEC10 Splice_Site p.X358_splice 0.18 TCGA-GN-A269-01 19 52497966 52497966 G A ZNF615 Silent p.F132F 0.31 TCGA-GN-A269-01 19 53644315 53644315 C T ZNF347 Missense_Mutation p.G590E 0.13 tolerated(0.15) benign(0.098) TCGA-GN-A269-01 19 53793629 53793629 G A BIRC8 5'UTR 0.17 TCGA-GN-A269-01 19 53958449 53958449 T A ZNF761 RNA 0.22 TCGA-GN-A269-01 19 53959500 53959500 G A ZNF761 RNA 0.30 TCGA-GN-A269-01 19 54140182 54140182 C T DPRX Silent p.C172C 0.21 TCGA-GN-A269-01 19 54444813 54444813 C T CACNG7 Missense_Mutation p.H172Y 0.21 deleterious(0.01) benign(0.154) TCGA-GN-A269-01 19 54501531 54501531 G A CACNG6 Missense_Mutation p.E124K 0.18 deleterious(0.03) possibly_damaging(0.822) TCGA-GN-A269-01 19 54696217 54696217 C T TSEN34 Silent p.V246V 0.17 TCGA-GN-A269-01 19 55106623 55106623 G A LILRA1 Silent p.G139G 0.16 TCGA-GN-A269-01 19 55246796 55246796 C T KIR3DL3 Silent p.L342L 0.23 TCGA-GN-A269-01 19 55496462 55496462 C T NLRP2 Missense_Mutation p.S693F 0.17 deleterious(0) probably_damaging(0.994) TCGA-GN-A269-01 19 55678019 55678019 G A DNAAF3 5'Flank 0.13 TCGA-GN-A269-01 19 56369627 56369627 C T NLRP4 Nonsense_Mutation p.Q290* 0.21 TCGA-GN-A269-01 19 56465910 56465910 C T NLRP8 Silent p.F162F 0.14 TCGA-GN-A269-01 19 56466522 56466522 C T NLRP8 Silent p.F366F 0.11 TCGA-GN-A269-01 19 56466752 56466752 C T NLRP8 Missense_Mutation p.S443F 0.18 deleterious(0.05) benign(0.005) TCGA-GN-A269-01 19 56572931 56572931 G A NLRP5 3'UTR 0.20 TCGA-GN-A269-01 19 5739414 5739414 G A CATSPERD Silent p.G179G 0.20 TCGA-GN-A269-01 19 58118641 58118641 C T ZNF530 Missense_Mutation p.S583F 0.26 tolerated(0.08) benign(0.062) TCGA-GN-A269-01 19 6685057 6685057 C T C3 Missense_Mutation p.S1304N 0.16 tolerated(0.15) benign(0.001) TCGA-GN-A269-01 19 8174261 8174261 C T FBN3 Missense_Mutation p.G1490R 0.20 deleterious(0) probably_damaging(0.964) TCGA-GN-A269-01 19 8203108 8203108 G A FBN3 Missense_Mutation p.P373L 0.23 tolerated(0.11) benign(0.013) TCGA-GN-A269-01 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.20 tolerated(0.13) benign(0.153) TCGA-GN-A269-01 19 9046738 9046738 C T MUC16 Silent p.V11631V 0.12 TCGA-GN-A269-01 19 9056720 9056720 C T MUC16 Silent p.G10242G 0.19 TCGA-GN-A269-01 19 9057290 9057290 T G MUC16 Silent p.S10052S 0.18 TCGA-GN-A269-01 19 9060457 9060457 T C MUC16 Missense_Mutation p.T8997A 0.24 unknown(0) TCGA-GN-A269-01 19 9065721 9065721 G A MUC16 Missense_Mutation p.S7242F 0.16 unknown(0) TCGA-GN-A269-01 19 9070856 9070856 G A MUC16 Silent p.S5530S 0.18 TCGA-GN-A269-01 19 9073747 9073747 G A MUC16 Missense_Mutation p.P4567S 0.14 unknown(0) TCGA-GN-A269-01 19 9080519 9080519 G A MUC16 Missense_Mutation p.S3171L 0.12 unknown(0) TCGA-GN-A269-01 19 9084051 9084051 T C MUC16 Silent p.E2588E 0.17 TCGA-GN-A269-01 19 9085376 9085376 G A MUC16 Missense_Mutation p.P2147S 0.24 unknown(0) TCGA-GN-A269-01 19 9213689 9213689 C T OR7G2 Silent p.T98T 0.13 TCGA-GN-A269-01 19 9237276 9237276 C T OR7G3 Missense_Mutation p.M117I 0.24 tolerated(0.06) benign(0.007) TCGA-GN-A269-01 19 9324751 9324751 C T OR7D4 Missense_Mutation p.G255R 0.10 deleterious(0.01) possibly_damaging(0.9) TCGA-GN-A269-01 19 9577729 9577729 C T ZNF560 Missense_Mutation p.D632N 0.19 tolerated(0.15) benign(0.008) TCGA-GN-A269-01 19 9870588 9870588 G A ZNF846 Missense_Mutation p.S87F 0.22 tolerated(0.18) benign(0.031) TCGA-GN-A269-01 1 110086967 110086967 C T GPR61 Silent p.L441L 0.23 TCGA-GN-A269-01 1 111439353 111439353 G A CD53 Missense_Mutation p.E168K 0.11 tolerated(0.63) benign(0.009) TCGA-GN-A269-01 1 111969247 111969247 G A OVGP1 Silent p.L24L 0.13 TCGA-GN-A269-01 1 11345724 11345724 C T UBIAD1 Silent p.L185L 0.17 TCGA-GN-A269-01 1 114682424 114682424 G A SYT6 Missense_Mutation p.P24S 0.17 tolerated_low_confidence(0.37) benign(0.002) TCGA-GN-A269-01 1 117695729 117695729 C T VTCN1 Silent p.G236G 0.18 TCGA-GN-A269-01 1 117984892 117984892 C T MAN1A2 Missense_Mutation p.L299F 0.11 deleterious(0) possibly_damaging(0.809) TCGA-GN-A269-01 1 12202505 12202505 C T TNFRSF8 Silent p.L569L 0.28 TCGA-GN-A269-01 1 12820745 12820745 G A C1orf158 Missense_Mutation p.R149K 0.10 tolerated(1) benign(0.003) TCGA-GN-A269-01 1 145416872 145416872 C T HFE2 Missense_Mutation p.S406F 0.11 deleterious(0.05) benign(0.328) TCGA-GN-A269-01 1 149939391 149939391 G A OTUD7B Silent p.A110A 0.27 TCGA-GN-A269-01 1 151787500 151787500 C T RORC Missense_Mutation p.E234K 0.19 tolerated(0.88) benign(0.002) TCGA-GN-A269-01 1 152058476 152058476 C T TCHHL1 Missense_Mutation p.S561N 0.22 tolerated(0.1) benign(0.434) TCGA-GN-A269-01 1 152277785 152277785 T C FLG Missense_Mutation p.R3193G 0.17 unknown(0) TCGA-GN-A269-01 1 152279804 152279804 C T FLG Missense_Mutation p.D2520N 0.22 possibly_damaging(0.53) TCGA-GN-A269-01 1 152323829 152323829 C T FLG2 Missense_Mutation p.G2145R 0.21 benign(0.252) TCGA-GN-A269-01 1 152329028 152329028 C T FLG2 Missense_Mutation p.E412K 0.19 unknown(0) TCGA-GN-A269-01 1 154680526 154680526 G A KCNN3 Missense_Mutation p.P708S 0.21 tolerated_low_confidence(0.19) benign(0.006) TCGA-GN-A269-01 1 155753808 155753808 G A GON4L Missense_Mutation p.R621C 0.29 deleterious(0) probably_damaging(0.967) TCGA-GN-A269-01 1 156622499 156622499 G A BCAN Missense_Mutation p.G586E 0.23 tolerated(0.18) probably_damaging(1) TCGA-GN-A269-01 1 156622522 156622522 C T BCAN Silent p.L594L 0.27 TCGA-GN-A269-01 1 156714136 156714136 G A HDGF Missense_Mutation p.S119F 0.26 deleterious(0.01) possibly_damaging(0.653) TCGA-GN-A269-01 1 157557143 157557143 C T FCRL4 Missense_Mutation p.G257E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 1 158549138 158549138 G A OR10X1 Silent p.F184F 0.20 TCGA-GN-A269-01 1 158632546 158632546 C T SPTA1 Missense_Mutation p.D804N 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 1 164769111 164769111 G A PBX1 Missense_Mutation p.R229Q 0.26 deleterious(0.02) probably_damaging(0.941) TCGA-GN-A269-01 1 165649914 165649914 G A ALDH9A1 Missense_Mutation p.A200V 0.25 tolerated(0.06) benign(0.268) TCGA-GN-A269-01 1 169509710 169509710 C T F5 Missense_Mutation p.E1540K 0.21 deleterious(0.04) benign(0.085) TCGA-GN-A269-01 1 170914708 170914708 G A MROH9 Missense_Mutation p.R4K 0.15 tolerated_low_confidence(0.71) benign(0.001) TCGA-GN-A269-01 1 171679897 171679897 T G VAMP4 Silent p.V74V 0.11 TCGA-GN-A269-01 1 175092555 175092555 C T TNN Silent p.N890N 0.18 TCGA-GN-A269-01 1 176525351 176525351 C T PAPPA2 5'UTR 0.27 TCGA-GN-A269-01 1 179520226 179520226 G A NPHS2 3'UTR 0.26 TCGA-GN-A269-01 1 18808159 18808159 G A KLHDC7A Silent p.V228V 0.21 TCGA-GN-A269-01 1 190234128 190234128 C T BRINP3 Missense_Mutation p.G162E 0.21 tolerated_low_confidence(0.36) benign(0.112) TCGA-GN-A269-01 1 192128357 192128357 G A RGS18 Missense_Mutation p.E43K 0.26 deleterious(0.04) benign(0.024) TCGA-GN-A269-01 1 197060024 197060024 G A ASPM Missense_Mutation p.R3198C 0.15 tolerated(0.16) benign(0.021) TCGA-GN-A269-01 1 197074187 197074187 A G ASPM Silent p.V1398V 0.21 TCGA-GN-A269-01 1 197297845 197297845 G A CRB1 Missense_Mutation p.G122R 0.16 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 1 197552297 197552297 G A DENND1B Silent p.L378L 0.20 TCGA-GN-A269-01 1 198711437 198711437 G A PTPRC Missense_Mutation p.D880N 0.18 deleterious(0.02) probably_damaging(1) TCGA-GN-A269-01 1 200843206 200843206 C T GPR25 Silent p.F347F 0.29 TCGA-GN-A269-01 1 200868692 200868692 G A C1orf106 Silent p.L49L 0.24 TCGA-GN-A269-01 1 201182705 201182705 C T IGFN1 Missense_Mutation p.S2895F 0.12 probably_damaging(0.953) TCGA-GN-A269-01 1 201924657 201924657 G A TIMM17A Translation_Start_Site p.M1? 0.23 deleterious(0) possibly_damaging(0.885) TCGA-GN-A269-01 1 203696545 203696545 G A ATP2B4 Missense_Mutation p.R1052Q 0.19 tolerated(0.24) benign(0.002) TCGA-GN-A269-01 1 204423835 204423835 G A PIK3C2B Silent p.F676F 0.12 TCGA-GN-A269-01 1 205273440 205273440 G A NUAK2 Missense_Mutation p.P342L 0.23 tolerated(0.24) probably_damaging(0.999) TCGA-GN-A269-01 1 207641898 207641898 C T CR2 Missense_Mutation p.P158S 0.09 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 1 211276866 211276866 G A KCNH1 Silent p.S94S 0.20 TCGA-GN-A269-01 1 212798721 212798721 G A FAM71A Missense_Mutation p.E168K 0.18 deleterious(0) probably_damaging(0.982) TCGA-GN-A269-01 1 227239590 227239590 G A CDC42BPA Intron 0.12 TCGA-GN-A269-01 1 228509380 228509380 C G OBSCN Missense_Mutation p.I5903M 0.24 possibly_damaging(0.709) TCGA-GN-A269-01 1 228560760 228560760 G A OBSCN Silent p.R8384R 0.21 TCGA-GN-A269-01 1 229770924 229770924 C T URB2 Silent p.V188V 0.15 TCGA-GN-A269-01 1 233190095 233190095 C T PCNXL2 Missense_Mutation p.D1424N 0.12 deleterious(0) benign(0.297) TCGA-GN-A269-01 1 233482265 233482265 G A MLK4 Missense_Mutation p.E295K 0.13 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 1 233514947 233514947 C T MLK4 Missense_Mutation p.S732L 0.21 deleterious(0) probably_damaging(0.972) TCGA-GN-A269-01 1 233767029 233767029 G A KCNK1 Intron 0.33 TCGA-GN-A269-01 1 23743824 23743824 C T TCEA3 Missense_Mutation p.E100K 0.18 tolerated(0.35) benign(0.007) TCGA-GN-A269-01 1 244217202 244217202 C T ZBTB18 Silent p.A42A 0.19 TCGA-GN-A269-01 1 244217203 244217203 C T ZBTB18 Nonsense_Mutation p.Q43* 0.20 TCGA-GN-A269-01 1 247614409 247614409 G A OR2B11 Silent p.F292F 0.15 TCGA-GN-A269-01 1 248402677 248402677 G A OR2M4 Nonsense_Mutation p.W149* 0.15 TCGA-GN-A269-01 1 248616559 248616559 C T OR2T2 Missense_Mutation p.S154F 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-GN-A269-01 1 27697178 27697178 G A FCN3 Silent p.N189N 0.15 TCGA-GN-A269-01 1 32086541 32086541 G A HCRTR1 Missense_Mutation p.R159Q 0.21 tolerated(0.18) benign(0.026) TCGA-GN-A269-01 1 33990616 33990616 G A CSMD2 Missense_Mutation p.S3277F 0.19 tolerated(0.08) benign(0.012) TCGA-GN-A269-01 1 33998709 33998709 G A CSMD2 Missense_Mutation p.S3227F 0.18 deleterious(0) probably_damaging(0.971) TCGA-GN-A269-01 1 34080129 34080129 C T CSMD2 Nonsense_Mutation p.W1996* 0.12 TCGA-GN-A269-01 1 35476593 35476593 G A ZMYM6 Silent p.P369P 0.18 TCGA-GN-A269-01 1 3673352 3673352 G A CCDC27 Silent p.R203R 0.14 TCGA-GN-A269-01 1 37270690 37270690 G A GRIK3 Silent p.I821I 0.17 TCGA-GN-A269-01 1 43778840 43778840 C T TIE1 Silent p.A654A 0.25 TCGA-GN-A269-01 1 43855557 43855557 C T SZT2 5'Flank 0.14 TCGA-GN-A269-01 1 47399628 47399628 G A CYP4A11 Silent p.S404S 0.14 TCGA-GN-A269-01 1 47402994 47402994 C T CYP4A11 Missense_Mutation p.R121K 0.12 tolerated(0.79) benign(0.006) TCGA-GN-A269-01 1 47403783 47403783 C T CYP4A11 Silent p.R74R 0.16 TCGA-GN-A269-01 1 56962131 56962131 C T PPAP2B 3'UTR 0.15 TCGA-GN-A269-01 1 57169911 57169911 G A PRKAA2 Missense_Mutation p.M352I 0.19 tolerated(0.28) benign(0.001) TCGA-GN-A269-01 1 57415272 57415272 G A C8B Nonsense_Mutation p.R274* 0.13 TCGA-GN-A269-01 1 60505758 60505758 T C C1orf87 Missense_Mutation p.N193S 0.20 tolerated(1) benign(0.001) TCGA-GN-A269-01 1 70555461 70555461 G A LRRC7 Missense_Mutation p.G1464R 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 1 75037778 75037778 C T C1orf173 Missense_Mutation p.E1206K 0.18 tolerated(0.15) benign(0.011) TCGA-GN-A269-01 1 75038009 75038009 C T C1orf173 Missense_Mutation p.E1129K 0.10 tolerated(0.4) benign(0.308) TCGA-GN-A269-01 1 77779508 77779508 C T AK5 Intron 0.21 TCGA-GN-A269-01 1 78024300 78024300 G T AK5 Missense_Mutation p.G545V 0.13 tolerated(0.14) benign(0.255) TCGA-GN-A269-01 1 78180395 78180395 G A USP33 Missense_Mutation p.L738F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A269-01 1 92498096 92498096 G A EPHX4 Missense_Mutation p.G89E 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 1 9324635 9324635 G T H6PD Missense_Mutation p.A695S 0.18 tolerated(0.5) benign(0.004) TCGA-GN-A269-01 1 94048307 94048307 G A BCAR3 Missense_Mutation p.L413F 0.17 tolerated(0.61) benign(0.023) TCGA-GN-A269-01 1 9809659 9809659 G A CLSTN1 Missense_Mutation p.A282V 0.11 tolerated(0.22) benign(0.14) TCGA-GN-A269-01 1 9910670 9910670 G A CTNNBIP1 3'UTR 0.17 TCGA-GN-A269-01 20 10036182 10036182 G A ANKEF1 Silent p.L735L 0.18 TCGA-GN-A269-01 20 10625626 10625626 G A JAG1 Silent p.A743A 0.16 TCGA-GN-A269-01 20 16474933 16474933 T C KIF16B Intron 0.27 TCGA-GN-A269-01 20 1961131 1961131 C T PDYN Silent p.E201E 0.26 TCGA-GN-A269-01 20 19665951 19665951 G A SLC24A3 Missense_Mutation p.E424K 0.14 tolerated(0.3) benign(0.011) TCGA-GN-A269-01 20 23666438 23666438 C T CST4 3'UTR 0.41 TCGA-GN-A269-01 20 31607447 31607447 C T BPIFB2 Missense_Mutation p.P324L 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 20 3171860 3171860 G A DDRGK1 Silent p.L252L 0.19 TCGA-GN-A269-01 20 32357965 32357965 C T ZNF341 Missense_Mutation p.H490Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 20 33077189 33077189 G A ITCH Missense_Mutation p.E779K 0.08 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 20 33874510 33874510 C T FAM83C Missense_Mutation p.G691E 0.13 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-GN-A269-01 20 35269686 35269686 G A SLA2 Missense_Mutation p.S18F 0.09 tolerated(0.21) unknown(0) TCGA-GN-A269-01 20 35738679 35738679 C T MROH8 Missense_Mutation p.R992K 0.29 tolerated(0.42) probably_damaging(0.998) TCGA-GN-A269-01 20 44828153 44828153 G A CDH22 Silent p.I444I 0.35 TCGA-GN-A269-01 20 44869675 44869675 C T CDH22 Silent p.Q159Q 0.14 TCGA-GN-A269-01 20 48130930 48130930 C T PTGIS Silent p.G286G 0.26 TCGA-GN-A269-01 20 56098238 56098238 C T CTCFL Missense_Mutation p.E214K 0.16 deleterious(0.02) benign(0.36) TCGA-GN-A269-01 20 57828183 57828183 G A ZNF831 Missense_Mutation p.R1393Q 0.14 tolerated(0.65) benign(0.03) TCGA-GN-A269-01 20 5963670 5963670 T G MCM8 Missense_Mutation p.L531W 0.13 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 20 61834905 61834905 G A YTHDF1 Silent p.F129F 0.31 TCGA-GN-A269-01 20 61835041 61835041 G A YTHDF1 Missense_Mutation p.P84L 0.28 tolerated(0.05) probably_damaging(0.98) TCGA-GN-A269-01 20 61981989 61981989 G A CHRNA4 Silent p.S258S 0.39 TCGA-GN-A269-01 20 9538273 9538273 G A PAK7 Silent p.L575L 0.22 TCGA-GN-A269-01 21 10862823 10862823 C T IGHV1OR21-1 Missense_Mutation p.S40F 0.06 deleterious(0.02) possibly_damaging(0.7) TCGA-GN-A269-01 21 41032912 41032912 C T B3GALT5 Silent p.V142V 0.10 TCGA-GN-A269-01 21 47552145 47552145 C T COL6A2 Silent p.S913S 0.18 TCGA-GN-A269-01 22 17073323 17073323 C T CCT8L2 Missense_Mutation p.V40I 0.19 tolerated(0.34) benign(0.003) TCGA-GN-A269-01 22 17073418 17073418 G A CCT8L2 Missense_Mutation p.A8V 0.15 tolerated(0.17) benign(0.011) TCGA-GN-A269-01 22 19055628 19055628 G A DGCR2 Missense_Mutation p.P105S 0.17 deleterious_low_confidence(0.01) benign(0.41) TCGA-GN-A269-01 22 26224751 26224751 C T MYO18B Missense_Mutation p.S932F 0.16 deleterious(0.01) benign(0.162) TCGA-GN-A269-01 22 30772336 30772336 G A CCDC157 Missense_Mutation p.G649E 0.24 deleterious(0.02) benign(0.109) TCGA-GN-A269-01 22 37196919 37196919 G A PVALB 3'UTR 0.06 TCGA-GN-A269-01 22 37602575 37602575 T C SSTR3 3'UTR 0.20 TCGA-GN-A269-01 22 37770430 37770430 G A ELFN2 Missense_Mutation p.P382L 0.13 tolerated(0.26) benign(0.043) TCGA-GN-A269-01 22 38240228 38240228 C T ANKRD54 Silent p.G6G 0.17 TCGA-GN-A269-01 22 39112978 39112978 C G GTPBP1 Silent p.G269G 0.16 TCGA-GN-A269-01 22 39219206 39219206 G A NPTXR Missense_Mutation p.T387I 0.17 tolerated(0.05) benign(0.015) TCGA-GN-A269-01 22 39358637 39358637 A T APOBEC3A 3'UTR 0.24 TCGA-GN-A269-01 22 40662517 40662517 G A TNRC6B Nonsense_Mutation p.W761* 0.09 TCGA-GN-A269-01 22 41735146 41735146 C T ZC3H7B Missense_Mutation p.S256L 0.15 tolerated(0.19) benign(0.117) TCGA-GN-A269-01 22 42523897 42523897 G A CYP2D6 Missense_Mutation p.S311L 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-GN-A269-01 2 100209733 100209733 G A AFF3 Missense_Mutation p.S822F 0.22 deleterious(0.03) benign(0.183) TCGA-GN-A269-01 2 101014497 101014497 G T CHST10 Silent p.L100L 0.17 TCGA-GN-A269-01 2 103068610 103068610 C T IL18RAP Missense_Mutation p.T590I 0.15 tolerated(0.27) benign(0.079) TCGA-GN-A269-01 2 103128671 103128671 C T SLC9A4 Missense_Mutation p.H500Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 2 107041038 107041038 C T RGPD3 Missense_Mutation p.A1129T 0.17 tolerated(0.14) benign(0.257) TCGA-GN-A269-01 2 108626927 108626927 G A SLC5A7 Silent p.E451E 0.15 TCGA-GN-A269-01 2 113343995 113343995 C T CHCHD5 Intron 0.25 TCGA-GN-A269-01 2 113588878 113588878 T C IL1B Silent p.L196L 0.18 TCGA-GN-A269-01 2 113675263 113675263 G A IL37 Missense_Mutation p.G106E 0.19 deleterious(0.04) probably_damaging(0.978) TCGA-GN-A269-01 2 121106868 121106868 G A INHBB Missense_Mutation p.M214I 0.17 tolerated(0.29) benign(0.014) TCGA-GN-A269-01 2 122005761 122005761 C T TFCP2L1 Silent p.K161K 0.11 TCGA-GN-A269-01 2 130792830 130792830 C T FAR2P1 5'Flank 0.26 TCGA-GN-A269-01 2 132021752 132021752 C T POTEE Silent p.I908I 0.09 TCGA-GN-A269-01 2 137917931 137917931 G A THSD7B Silent p.G506G 0.20 TCGA-GN-A269-01 2 138373870 138373870 C T THSD7B Silent p.F1186F 0.14 TCGA-GN-A269-01 2 141777573 141777573 C T LRP1B Missense_Mutation p.E630K 0.11 possibly_damaging(0.549) TCGA-GN-A269-01 2 152499762 152499762 G A NEB Missense_Mutation p.H2688Y 0.16 benign(0.01) TCGA-GN-A269-01 2 155711814 155711814 C T KCNJ3 Missense_Mutation p.R499C 0.24 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-GN-A269-01 2 160898553 160898553 C T PLA2R1 Missense_Mutation p.G217E 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 2 163291874 163291874 C T KCNH7 Silent p.G596G 0.22 TCGA-GN-A269-01 2 165353901 165353901 C T GRB14 Missense_Mutation p.E402K 0.16 deleterious(0) probably_damaging(0.997) TCGA-GN-A269-01 2 165476271 165476271 C T GRB14 Missense_Mutation p.E84K 0.20 deleterious(0) probably_damaging(0.983) TCGA-GN-A269-01 2 165578729 165578729 G A COBLL1 Silent p.T284T 0.12 TCGA-GN-A269-01 2 166243504 166243504 G A SCN2A Silent p.V1600V 0.20 TCGA-GN-A269-01 2 166896038 166896038 G A SCN1A Silent p.F828F 0.21 TCGA-GN-A269-01 2 167060535 167060535 G A SCN9A Silent p.S1557S 0.36 TCGA-GN-A269-01 2 167141319 167141319 G A SCN9A Missense_Mutation p.R540C 0.31 deleterious(0.01) probably_damaging(0.911) TCGA-GN-A269-01 2 167262763 167262763 C T SCN7A Missense_Mutation p.G1459E 0.17 deleterious(0.01) probably_damaging(1) TCGA-GN-A269-01 2 169622848 169622848 C T CERS6 Missense_Mutation p.P340L 0.13 tolerated_low_confidence(0.23) probably_damaging(0.996) TCGA-GN-A269-01 2 169791708 169791708 G A ABCB11 Silent p.F1014F 0.18 TCGA-GN-A269-01 2 171056776 171056776 G A MYO3B Silent p.Q101Q 0.17 TCGA-GN-A269-01 2 173832016 173832016 A G RAPGEF4 Missense_Mutation p.K283R 0.28 tolerated(0.22) possibly_damaging(0.884) TCGA-GN-A269-01 2 179439727 179439727 A G TTN Missense_Mutation p.I23711T 0.07 TCGA-GN-A269-01 2 179464536 179464536 C T TTN Missense_Mutation p.E18698K 0.19 TCGA-GN-A269-01 2 179569654 179569654 C T TTN Missense_Mutation p.E9882K 0.13 TCGA-GN-A269-01 2 179591999 179591999 C T TTN Missense_Mutation p.R6698K 0.16 TCGA-GN-A269-01 2 179615579 179615579 C T TTN Intron 0.08 TCGA-GN-A269-01 2 179616325 179616325 C T TTN Intron 0.12 TCGA-GN-A269-01 2 179648473 179648473 G A TTN Missense_Mutation p.P939S 0.11 TCGA-GN-A269-01 2 179720245 179720245 T C CCDC141 Silent p.K963K 0.15 TCGA-GN-A269-01 2 185802120 185802120 C T ZNF804A Missense_Mutation p.S666F 0.13 tolerated(0.42) benign(0.004) TCGA-GN-A269-01 2 186697897 186697897 C T FSIP2 Nonsense_Mutation p.Q6979* 0.11 TCGA-GN-A269-01 2 18766041 18766041 C T NT5C1B Silent p.E214E 0.11 TCGA-GN-A269-01 2 189599568 189599568 G A DIRC1 Missense_Mutation p.S27F 0.24 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-GN-A269-01 2 189870087 189870087 G A COL3A1 Silent p.G981G 0.18 TCGA-GN-A269-01 2 196729392 196729392 G A DNAH7 Silent p.I2329I 0.26 TCGA-GN-A269-01 2 202074214 202074214 C T CASP10 Silent p.S448S 0.19 TCGA-GN-A269-01 2 207310197 207310197 C T ADAM23 Silent p.S127S 0.13 TCGA-GN-A269-01 2 209047720 209047720 C T C2orf80 Missense_Mutation p.E59K 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-GN-A269-01 2 209051686 209051686 C T C2orf80 Missense_Mutation p.E9K 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-GN-A269-01 2 209190278 209190278 C T PIKFYVE Missense_Mutation p.P915S 0.09 tolerated_low_confidence(0.83) benign(0) TCGA-GN-A269-01 2 215854056 215854056 G A ABCA12 Missense_Mutation p.P1276S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A269-01 2 218940409 218940409 C T RUFY4 Silent p.T418T 0.18 TCGA-GN-A269-01 2 219617597 219617597 C A TTLL4 Missense_Mutation p.H1030N 0.19 tolerated(0.1) benign(0.011) TCGA-GN-A269-01 2 220102567 220102567 G A GLB1L Missense_Mutation p.S485F 0.12 deleterious(0.04) possibly_damaging(0.769) TCGA-GN-A269-01 2 226273743 226273743 G A NYAP2 Silent p.L49L 0.16 TCGA-GN-A269-01 2 228881126 228881126 G A SPHKAP Missense_Mutation p.H1482Y 0.16 tolerated(1) benign(0.003) TCGA-GN-A269-01 2 228886633 228886633 C T SPHKAP Missense_Mutation p.R164K 0.23 tolerated(0.13) benign(0.216) TCGA-GN-A269-01 2 230910950 230910950 C T SLC16A14 Missense_Mutation p.E298K 0.10 tolerated(0.29) benign(0.013) TCGA-GN-A269-01 2 231067390 231067390 A G SP110 Missense_Mutation p.V318A 0.14 tolerated(0.85) unknown(0) TCGA-GN-A269-01 2 231155266 231155266 G A SP140 Silent p.K604K 0.14 TCGA-GN-A269-01 2 231174672 231174672 G A SP140 Missense_Mutation p.D698N 0.15 deleterious(0.03) benign(0.349) TCGA-GN-A269-01 2 233246055 233246055 G A ALPP Silent p.P429P 0.11 TCGA-GN-A269-01 2 233322995 233322995 G A ALPI Missense_Mutation p.D354N 0.17 deleterious(0) benign(0.367) TCGA-GN-A269-01 2 233756070 233756070 G A NGEF Nonsense_Mutation p.Q424* 0.20 TCGA-GN-A269-01 2 238275864 238275864 G A COL6A3 Nonsense_Mutation p.Q1656* 0.12 TCGA-GN-A269-01 2 241534660 241534660 C T CAPN10 Missense_Mutation p.S406L 0.20 tolerated(0.2) benign(0.009) TCGA-GN-A269-01 2 242814358 242814358 C T CXXC11 Silent p.P217P 0.23 TCGA-GN-A269-01 2 26703111 26703111 C T OTOF Silent p.R624R 0.13 TCGA-GN-A269-01 2 27164914 27164914 C T DPYSL5 Missense_Mutation p.P396S 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 2 27481129 27481129 G A SLC30A3 Silent p.H108H 0.23 TCGA-GN-A269-01 2 27481130 27481130 T A SLC30A3 Missense_Mutation p.H108L 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 2 27676582 27676582 G T IFT172 Missense_Mutation p.L1246M 0.25 tolerated(0.14) benign(0.273) TCGA-GN-A269-01 2 27693920 27693920 G A IFT172 Missense_Mutation p.L523F 0.12 deleterious(0.02) possibly_damaging(0.845) TCGA-GN-A269-01 2 27726447 27726447 G A GCKR Silent p.Q237Q 0.15 TCGA-GN-A269-01 2 27801985 27801985 G A C2orf16 Missense_Mutation p.R849Q 0.18 tolerated(0.36) benign(0.013) TCGA-GN-A269-01 2 28635355 28635355 C T FOSL2 3'UTR 0.08 TCGA-GN-A269-01 2 38977196 38977196 G A SRSF7 Missense_Mutation p.P57S 0.23 tolerated(0.16) benign(0.349) TCGA-GN-A269-01 2 42280438 42280438 G A PKDCC Silent p.T233T 0.12 TCGA-GN-A269-01 2 42280439 42280439 G A PKDCC Missense_Mutation p.E234K 0.13 deleterious(0) probably_damaging(0.939) TCGA-GN-A269-01 2 44079912 44079912 C T ABCG8 Missense_Mutation p.T290I 0.15 tolerated(0.19) benign(0.006) TCGA-GN-A269-01 2 48822421 48822421 G A STON1 Missense_Mutation p.G730S 0.28 tolerated(0.55) benign(0.026) TCGA-GN-A269-01 2 49217768 49217768 G A FSHR Missense_Mutation p.S128F 0.16 tolerated(0.76) possibly_damaging(0.828) TCGA-GN-A269-01 2 51254734 51254734 C G NRXN1 Silent p.G226G 0.35 TCGA-GN-A269-01 2 68962338 68962338 C T ARHGAP25 Silent p.L3L 0.13 TCGA-GN-A269-01 2 71780958 71780958 C G DYSF Missense_Mutation p.P669R 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 2 74593086 74593086 G A DCTN1 Silent p.G940G 0.23 TCGA-GN-A269-01 2 80101409 80101409 G A CTNNA2 Missense_Mutation p.D265N 0.21 tolerated(0.53) benign(0.211) TCGA-GN-A269-01 2 80874951 80874951 C T CTNNA2 Missense_Mutation p.S891L 0.10 deleterious(0.03) possibly_damaging(0.537) TCGA-GN-A269-01 2 85581623 85581623 A T RETSAT Missense_Mutation p.L3H 0.21 deleterious(0.05) unknown(0) TCGA-GN-A269-01 2 89417058 89417058 G A IGKV1-17 Silent p.T42T 0.16 TCGA-GN-A269-01 2 90199105 90199105 C T IGKV1D-12 Missense_Mutation p.S89F 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-GN-A269-01 2 97271080 97271080 G A KANSL3 Missense_Mutation p.P637L 0.17 tolerated_low_confidence(0.15) benign(0.056) TCGA-GN-A269-01 2 99448932 99448932 G A KIAA1211L Missense_Mutation p.P140L 0.17 tolerated(0.09) possibly_damaging(0.851) TCGA-GN-A269-01 3 10130618 10130618 T C FANCD2 Missense_Mutation p.F1223L 0.16 deleterious(0.01) benign(0.3) TCGA-GN-A269-01 3 101520777 101520777 C T NXPE3 Silent p.F264F 0.13 TCGA-GN-A269-01 3 102153975 102153975 C T ZPLD1 Missense_Mutation p.S6F 0.16 deleterious_low_confidence(0.02) benign(0) TCGA-GN-A269-01 3 108178266 108178266 T A MYH15 Nonsense_Mutation p.K675* 0.19 TCGA-GN-A269-01 3 113175994 113175994 G A SPICE1 Missense_Mutation p.P549L 0.22 deleterious(0.02) possibly_damaging(0.753) TCGA-GN-A269-01 3 113330992 113330992 C T SIDT1 Silent p.A639A 0.20 TCGA-GN-A269-01 3 120957827 120957827 C T STXBP5L Silent p.I398I 0.14 TCGA-GN-A269-01 3 120973939 120973939 G A STXBP5L Missense_Mutation p.E547K 0.19 deleterious(0) benign(0.41) TCGA-GN-A269-01 3 121350951 121350951 C T HCLS1 Missense_Mutation p.G441R 0.11 deleterious(0) probably_damaging(0.988) TCGA-GN-A269-01 3 124642407 124642407 C T MUC13 Missense_Mutation p.G201R 0.12 deleterious(0.02) probably_damaging(0.969) TCGA-GN-A269-01 3 127292431 127292431 G A TPRA1 Missense_Mutation p.S352F 0.16 deleterious(0.01) possibly_damaging(0.757) TCGA-GN-A269-01 3 130947510 130947510 C T NEK11 Missense_Mutation p.P513L 0.16 deleterious(0.05) benign(0.004) TCGA-GN-A269-01 3 160945082 160945082 G A NMD3 Missense_Mutation p.R76K 0.13 tolerated(0.21) benign(0.122) TCGA-GN-A269-01 3 164697120 164697120 C T SI 3'UTR 0.28 TCGA-GN-A269-01 3 169496554 169496554 A T MYNN Splice_Site p.X89_splice 0.18 TCGA-GN-A269-01 3 17051844 17051844 C T PLCL2 Missense_Mutation p.H210Y 0.24 tolerated(0.34) possibly_damaging(0.507) TCGA-GN-A269-01 3 172165494 172165494 C T GHSR Missense_Mutation p.R237K 0.19 deleterious(0.05) probably_damaging(0.996) TCGA-GN-A269-01 3 172634193 172634193 C T SPATA16 Missense_Mutation p.E473K 0.19 deleterious(0) possibly_damaging(0.486) TCGA-GN-A269-01 3 189705396 189705396 C T LEPREL1 Missense_Mutation p.E340K 0.20 deleterious(0) benign(0.051) TCGA-GN-A269-01 3 193180552 193180552 C T ATP13A4 Missense_Mutation p.G508S 0.13 tolerated(0.83) benign(0.042) TCGA-GN-A269-01 3 195937578 195937578 C T ZDHHC19 Nonsense_Mutation p.W59* 0.12 TCGA-GN-A269-01 3 196083650 196083650 G A UBXN7 Missense_Mutation p.P459L 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 3 21462796 21462796 G A ZNF385D Silent p.F366F 0.30 TCGA-GN-A269-01 3 37033538 37033538 C T EPM2AIP1 Missense_Mutation p.R344K 0.24 tolerated(0.16) benign(0.002) TCGA-GN-A269-01 3 38307648 38307648 C T SLC22A13 Silent p.L99L 0.19 TCGA-GN-A269-01 3 38601884 38601884 G A SCN5A Silent p.S1333S 0.08 TCGA-GN-A269-01 3 38766673 38766673 G A SCN10A Missense_Mutation p.P1074S 0.20 tolerated(0.31) benign(0.043) TCGA-GN-A269-01 3 38991891 38991891 G A SCN11A 5'UTR 0.14 TCGA-GN-A269-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-GN-A269-01 3 42448470 42448470 C T LYZL4 Missense_Mutation p.E54K 0.17 deleterious(0) probably_damaging(0.979) TCGA-GN-A269-01 3 47896788 47896788 C T MAP4 Missense_Mutation p.V1071M 0.16 deleterious(0.02) probably_damaging(0.982) TCGA-GN-A269-01 3 48454244 48454244 C T PLXNB1 Silent p.R1587R 0.14 TCGA-GN-A269-01 3 48454245 48454245 C T PLXNB1 Missense_Mutation p.R1587Q 0.15 tolerated(0.12) probably_damaging(0.997) TCGA-GN-A269-01 3 48664104 48664104 G A SLC26A6 Silent p.F696F 0.18 TCGA-GN-A269-01 3 48677785 48677785 C T CELSR3 Missense_Mutation p.R3078Q 0.13 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-GN-A269-01 3 50368147 50368147 G A RASSF1 Silent p.F300F 0.15 TCGA-GN-A269-01 3 51517738 51517738 G A VPRBP Missense_Mutation p.T36I 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-GN-A269-01 3 52541961 52541961 G A STAB1 Silent p.K689K 0.17 TCGA-GN-A269-01 3 53844086 53844086 C T CACNA1D Missense_Mutation p.P2005S 0.16 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-GN-A269-01 3 53844087 53844087 C T CACNA1D Missense_Mutation p.P2005L 0.16 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-GN-A269-01 3 54930880 54930880 C T CACNA2D3 Missense_Mutation p.S784L 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-GN-A269-01 3 63825450 63825450 C T THOC7 Splice_Site p.X7_splice 0.08 TCGA-GN-A269-01 3 65415693 65415693 G A MAGI1 Missense_Mutation p.P557S 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-GN-A269-01 3 9069797 9069797 C T SRGAP3 Intron 0.12 TCGA-GN-A269-01 3 93780104 93780104 T A DHFRL1 Silent p.P84P 0.23 TCGA-GN-A269-01 3 97888366 97888366 C G OR5H15 Missense_Mutation p.P275A 0.14 tolerated(0.34) benign(0.002) TCGA-GN-A269-01 3 98189104 98189104 G A OR5K1 Missense_Mutation p.M228I 0.09 tolerated(0.08) probably_damaging(0.985) TCGA-GN-A269-01 4 104067143 104067143 A G CENPE Missense_Mutation p.I1419T 0.11 benign(0.003) TCGA-GN-A269-01 4 104640404 104640404 G A TACR3 Silent p.F143F 0.26 TCGA-GN-A269-01 4 107845316 107845316 C T DKK2 Missense_Mutation p.G192E 0.16 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 4 119951534 119951534 C T SYNPO2 Missense_Mutation p.S535F 0.23 tolerated(0.07) probably_damaging(0.983) TCGA-GN-A269-01 4 121957872 121957872 G A NDNF Silent p.L418L 0.24 TCGA-GN-A269-01 4 123317448 123317448 A T ADAD1 Nonsense_Mutation p.K214* 0.23 TCGA-GN-A269-01 4 126242301 126242301 C T FAT4 Missense_Mutation p.R1579C 0.15 probably_damaging(0.998) TCGA-GN-A269-01 4 126371171 126371171 G A FAT4 Silent p.T3000T 0.12 TCGA-GN-A269-01 4 126371291 126371291 G A FAT4 Nonsense_Mutation p.W3040* 0.16 TCGA-GN-A269-01 4 129035873 129035873 T C LARP1B Silent p.H379H 0.10 TCGA-GN-A269-01 4 129867241 129867241 G A SCLT1 Silent p.L454L 0.25 TCGA-GN-A269-01 4 13338222 13338222 C T HSP90AB2P RNA 0.16 TCGA-GN-A269-01 4 13604424 13604424 G A BOD1L1 Missense_Mutation p.P1367L 0.17 possibly_damaging(0.894) TCGA-GN-A269-01 4 138451643 138451643 C T PCDH18 Missense_Mutation p.D534N 0.12 tolerated(0.42) probably_damaging(1) TCGA-GN-A269-01 4 141317270 141317270 G A CLGN Missense_Mutation p.P325L 0.11 deleterious(0.01) benign(0.303) TCGA-GN-A269-01 4 143235912 143235912 G A INPP4B Nonsense_Mutation p.R126* 0.23 TCGA-GN-A269-01 4 143350350 143350350 C T INPP4B Missense_Mutation p.E38K 0.21 deleterious(0.01) benign(0.124) TCGA-GN-A269-01 4 145628247 145628247 C T HHIP Missense_Mutation p.P331L 0.24 tolerated(0.11) benign(0.375) TCGA-GN-A269-01 4 148406806 148406806 A G EDNRA 5'UTR 0.33 TCGA-GN-A269-01 4 155491713 155491713 G A FGB Missense_Mutation p.D463N 0.14 tolerated(0.67) possibly_damaging(0.692) TCGA-GN-A269-01 4 155505387 155505387 C T FGA Silent p.R830R 0.20 TCGA-GN-A269-01 4 156634625 156634625 G A GUCY1A3 Missense_Mutation p.V488I 0.17 deleterious(0) probably_damaging(0.991) TCGA-GN-A269-01 4 165962409 165962409 T G TRIM60 Silent p.G395G 0.14 TCGA-GN-A269-01 4 169433032 169433032 C T PALLD Missense_Mutation p.P126L 0.13 deleterious(0.02) benign(0.051) TCGA-GN-A269-01 4 173942764 173942764 G A GALNTL6 Nonsense_Mutation p.W542* 0.18 TCGA-GN-A269-01 4 175413051 175413051 G A HPGD 3'UTR 0.18 TCGA-GN-A269-01 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.20 deleterious(0) probably_damaging(0.991) TCGA-GN-A269-01 4 183675559 183675559 G A TENM3 Missense_Mutation p.D1347N 0.27 deleterious(0) benign(0.007) TCGA-GN-A269-01 4 183675993 183675993 G A TENM3 Silent p.G1491G 0.17 TCGA-GN-A269-01 4 2949345 2949345 G A NOP14 Intron 0.20 TCGA-GN-A269-01 4 39304170 39304170 G A RFC1 Missense_Mutation p.P797S 0.18 deleterious(0.05) benign(0.265) TCGA-GN-A269-01 4 42457331 42457331 G A ATP8A1 Silent p.L934L 0.26 TCGA-GN-A269-01 4 46053649 46053649 G A GABRG1 Missense_Mutation p.T308I 0.10 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 4 47427981 47427981 C T GABRB1 Silent p.F457F 0.18 TCGA-GN-A269-01 4 53380 53380 G A ZNF595 5'UTR 0.04 TCGA-GN-A269-01 4 55984850 55984850 C T KDR Silent p.V93V 0.25 TCGA-GN-A269-01 4 6064089 6064089 G T JAKMIP1 Missense_Mutation p.L504M 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 4 68964644 68964644 C T TMPRSS11F Missense_Mutation p.G42R 0.22 deleterious(0) possibly_damaging(0.881) TCGA-GN-A269-01 4 70146345 70146345 C T UGT2B28 Silent p.L43L 0.28 TCGA-GN-A269-01 4 70146450 70146450 C T UGT2B28 Missense_Mutation p.P78S 0.25 tolerated(0.08) possibly_damaging(0.483) TCGA-GN-A269-01 4 70504997 70504997 C T UGT2A2 Missense_Mutation p.G121E 0.22 tolerated(0.8) benign(0.098) TCGA-GN-A269-01 4 70823200 70823200 G A CSN2 Missense_Mutation p.P156L 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-GN-A269-01 4 73013347 73013347 G A NPFFR2 Missense_Mutation p.E463K 0.20 tolerated(0.1) benign(0.013) TCGA-GN-A269-01 4 74702545 74702545 C T CXCL6 Silent p.L26L 0.23 TCGA-GN-A269-01 4 76879014 76879014 C T SDAD1 Missense_Mutation p.E522K 0.19 tolerated(0.08) possibly_damaging(0.644) TCGA-GN-A269-01 4 77324294 77324294 C T CCDC158 Missense_Mutation p.G23R 0.29 tolerated(0.5) benign(0.027) TCGA-GN-A269-01 4 77699981 77699981 G A SHROOM3 Missense_Mutation p.R1881K 0.17 tolerated(0.13) benign(0.252) TCGA-GN-A269-01 4 79236774 79236774 G A FRAS1 Missense_Mutation p.G569S 0.14 benign(0.024) TCGA-GN-A269-01 4 80246900 80246900 G A NAA11 Silent p.I44I 0.15 TCGA-GN-A269-01 4 85752612 85752612 G A WDFY3 Silent p.T241T 0.19 TCGA-GN-A269-01 4 94436427 94436427 G A GRID2 Silent p.A686A 0.16 TCGA-GN-A269-01 5 107216831 107216831 G A FBXL17 Silent p.V624V 0.14 TCGA-GN-A269-01 5 110836762 110836762 G A STARD4 Missense_Mutation p.S112F 0.16 deleterious(0) probably_damaging(0.954) TCGA-GN-A269-01 5 112177788 112177788 G A APC Missense_Mutation p.R2166Q 0.18 possibly_damaging(0.716) TCGA-GN-A269-01 5 113699644 113699644 C T KCNN2 Silent p.L176L 0.16 TCGA-GN-A269-01 5 13721267 13721267 G A DNAH5 Missense_Mutation p.P4041S 0.19 possibly_damaging(0.876) TCGA-GN-A269-01 5 137600092 137600092 C T GFRA3 Silent p.E79E 0.41 TCGA-GN-A269-01 5 138208982 138208982 A T LRRTM2 Missense_Mutation p.V423E 0.18 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 5 138643519 138643519 C T MATR3 Missense_Mutation p.P139S 0.15 deleterious(0) probably_damaging(0.979) TCGA-GN-A269-01 5 13868074 13868074 C T DNAH5 Missense_Mutation p.G1288R 0.29 benign(0) TCGA-GN-A269-01 5 13871781 13871781 G T DNAH5 Missense_Mutation p.P1164T 0.15 possibly_damaging(0.641) TCGA-GN-A269-01 5 138723407 138723407 C T MZB1 3'UTR 0.25 TCGA-GN-A269-01 5 13885104 13885104 A C DNAH5 Missense_Mutation p.F993V 0.21 benign(0.307) TCGA-GN-A269-01 5 13931219 13931219 C T DNAH5 Silent p.Q64Q 0.09 TCGA-GN-A269-01 5 140214382 140214382 G A PCDHA7 Silent p.R138R 0.27 TCGA-GN-A269-01 5 140221050 140221050 C T PCDHA8 Silent p.I48I 0.11 TCGA-GN-A269-01 5 140307642 140307642 G A PCDHAC1 Missense_Mutation p.A389T 0.20 tolerated(0.12) benign(0.023) TCGA-GN-A269-01 5 140768504 140768504 C T PCDHGB4 Silent p.P351P 0.16 TCGA-GN-A269-01 5 145439612 145439612 C T SH3RF2 Missense_Mutation p.P580L 0.16 tolerated(0.06) benign(0.009) TCGA-GN-A269-01 5 1494858 1494858 G A LPCAT1 Silent p.S150S 0.15 TCGA-GN-A269-01 5 150666947 150666947 G A SLC36A3 Missense_Mutation p.R231C 0.17 deleterious(0) probably_damaging(0.961) TCGA-GN-A269-01 5 154394888 154394888 C T KIF4B Missense_Mutation p.T490I 0.18 tolerated(0.08) benign(0.002) TCGA-GN-A269-01 5 168199885 168199885 C T SLIT3 Missense_Mutation p.D454N 0.23 tolerated(0.27) probably_damaging(0.998) TCGA-GN-A269-01 5 169410162 169410162 G A DOCK2 Missense_Mutation p.E964K 0.23 deleterious(0) benign(0.06) TCGA-GN-A269-01 5 176295819 176295819 C T UNC5A Missense_Mutation p.P192L 0.28 tolerated(0.06) probably_damaging(0.924) TCGA-GN-A269-01 5 176314054 176314054 G A HK3 Silent p.L602L 0.22 TCGA-GN-A269-01 5 178310038 178310038 C T ZNF354B Silent p.F195F 0.27 TCGA-GN-A269-01 5 178417676 178417676 C T GRM6 Missense_Mutation p.G310E 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 5 180424345 180424345 C T BTNL3 Missense_Mutation p.S177L 0.22 tolerated(0.08) benign(0.045) TCGA-GN-A269-01 5 21765107 21765107 C T CDH12 Missense_Mutation p.E499K 0.11 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 5 23527262 23527262 G A PRDM9 Missense_Mutation p.E689K 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-GN-A269-01 5 26881640 26881640 A G CDH9 Missense_Mutation p.Y659H 0.13 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 5 31983668 31983668 C T PDZD2 Missense_Mutation p.P295L 0.25 tolerated(0.07) probably_damaging(0.948) TCGA-GN-A269-01 5 32053928 32053928 G A PDZD2 Silent p.G613G 0.16 TCGA-GN-A269-01 5 32074338 32074338 G A PDZD2 Silent p.E1042E 0.23 TCGA-GN-A269-01 5 32091151 32091151 G A PDZD2 Missense_Mutation p.E2533K 0.16 tolerated(0.87) benign(0.002) TCGA-GN-A269-01 5 35048022 35048022 C T AGXT2 5'UTR 0.19 TCGA-GN-A269-01 5 38418357 38418357 G A EGFLAM Missense_Mutation p.G562R 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 5 38881746 38881746 G A OSMR Missense_Mutation p.E100K 0.15 tolerated(0.23) benign(0.035) TCGA-GN-A269-01 5 39377003 39377003 G A DAB2 Missense_Mutation p.P629L 0.17 tolerated(0.17) benign(0.003) TCGA-GN-A269-01 5 42719299 42719299 G A GHR Missense_Mutation p.D564N 0.14 tolerated(0.07) possibly_damaging(0.759) TCGA-GN-A269-01 5 45262128 45262128 G A HCN1 Silent p.V856V 0.18 TCGA-GN-A269-01 5 52371124 52371124 C T ITGA2 Missense_Mutation p.H939Y 0.14 tolerated(0.96) probably_damaging(0.917) TCGA-GN-A269-01 5 54275124 54275124 G A ESM1 3'UTR 0.07 TCGA-GN-A269-01 5 54275181 54275181 C T ESM1 Silent p.R178R 0.11 TCGA-GN-A269-01 5 54948435 54948435 G A SLC38A9 Missense_Mutation p.P292S 0.18 deleterious(0) probably_damaging(0.991) TCGA-GN-A269-01 5 640714 640714 G A CEP72 Missense_Mutation p.E512K 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-GN-A269-01 5 64756156 64756156 T C ADAMTS6 Missense_Mutation p.I158V 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-GN-A269-01 5 72798383 72798383 C T BTF3 Missense_Mutation p.S91F 0.14 deleterious(0.01) benign(0.164) TCGA-GN-A269-01 5 75757427 75757427 G A IQGAP2 Missense_Mutation p.E27K 0.15 deleterious(0) possibly_damaging(0.789) TCGA-GN-A269-01 5 78672020 78672020 C T HOMER1 Missense_Mutation p.E293K 0.18 tolerated(0.13) benign(0.118) TCGA-GN-A269-01 5 79033333 79033333 G A CMYA5 Silent p.K2915K 0.16 TCGA-GN-A269-01 5 80382693 80382693 G A RASGRF2 Silent p.R437R 0.15 TCGA-GN-A269-01 5 843743 843743 C T ZDHHC11 Silent p.G200G 0.09 TCGA-GN-A269-01 5 94852915 94852915 G A TTC37 Silent p.V742V 0.14 TCGA-GN-A269-01 5 94918630 94918630 G A ARSK Missense_Mutation p.E143K 0.19 deleterious(0.03) probably_damaging(0.992) TCGA-GN-A269-01 5 96349452 96349452 A C LNPEP Silent p.L712L 0.25 TCGA-GN-A269-01 6 100841510 100841510 C T SIM1 Missense_Mutation p.G475S 0.15 tolerated_low_confidence(0.13) benign(0.289) TCGA-GN-A269-01 6 105564691 105564691 C T BVES Missense_Mutation p.R234K 0.14 tolerated(0.14) benign(0.077) TCGA-GN-A269-01 6 106554840 106554840 C T PRDM1 Missense_Mutation p.H653Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 6 106696042 106696042 G A ATG5 Missense_Mutation p.P186S 0.07 deleterious(0) benign(0.204) TCGA-GN-A269-01 6 109768899 109768899 C T MICAL1 Silent p.K657K 0.15 TCGA-GN-A269-01 6 110953310 110953310 A T CDK19 Nonsense_Mutation p.L190* 0.16 TCGA-GN-A269-01 6 111696451 111696451 G T REV3L Missense_Mutation p.P1036H 0.14 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 6 112035566 112035566 G A FYN Nonsense_Mutation p.Q110* 0.15 TCGA-GN-A269-01 6 125232112 125232112 C T RP11-510H23.1 RNA 0.12 TCGA-GN-A269-01 6 127797362 127797362 C T SOGA3 Silent p.R603R 0.16 TCGA-GN-A269-01 6 128302403 128302403 G A PTPRK Missense_Mutation p.A1196V 0.37 tolerated(1) benign(0.2) TCGA-GN-A269-01 6 130467282 130467282 C T SAMD3 Silent p.K356K 0.11 TCGA-GN-A269-01 6 130497110 130497110 C T SAMD3 Missense_Mutation p.R233Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 6 130762216 130762216 C T TMEM200A Missense_Mutation p.R217W 0.23 deleterious_low_confidence(0.02) benign(0.226) TCGA-GN-A269-01 6 132892276 132892276 A G TAAR6 Silent p.L272L 0.22 TCGA-GN-A269-01 6 132910326 132910326 G A TAAR5 Missense_Mutation p.S167L 0.26 tolerated(0.58) benign(0.183) TCGA-GN-A269-01 6 136552438 136552438 G A MTFR2 Missense_Mutation p.T378I 0.16 tolerated_low_confidence(0.18) benign(0.002) TCGA-GN-A269-01 6 139094928 139094928 G A CCDC28A Silent p.R39R 0.16 TCGA-GN-A269-01 6 142396941 142396941 G A NMBR Silent p.L339L 0.31 TCGA-GN-A269-01 6 143089611 143089611 G A HIVEP2 Silent p.I1750I 0.12 TCGA-GN-A269-01 6 149777843 149777843 G A ZC3H12D Silent p.F213F 0.19 TCGA-GN-A269-01 6 152826376 152826376 G A SYNE1 Silent p.A246A 0.09 TCGA-GN-A269-01 6 155561752 155561752 C T TIAM2 Missense_Mutation p.P1086L 0.23 deleterious(0.01) benign(0.003) TCGA-GN-A269-01 6 155774610 155774610 G A NOX3 Missense_Mutation p.P90S 0.15 tolerated(0.74) benign(0.011) TCGA-GN-A269-01 6 159457419 159457419 C T TAGAP Missense_Mutation p.E546K 0.06 tolerated(0.09) possibly_damaging(0.871) TCGA-GN-A269-01 6 160496916 160496916 C T IGF2R Missense_Mutation p.P1735L 0.18 tolerated(0.1) possibly_damaging(0.479) TCGA-GN-A269-01 6 161027540 161027540 C T LPA Silent p.P918P 0.14 TCGA-GN-A269-01 6 167550381 167550381 T C CCR6 Silent p.F221F 0.12 TCGA-GN-A269-01 6 167754861 167754861 G A TTLL2 Silent p.E491E 0.10 TCGA-GN-A269-01 6 24596509 24596509 C T KIAA0319 Silent p.G131G 0.08 TCGA-GN-A269-01 6 26045748 26045748 A T HIST1H3C Missense_Mutation p.K37M 0.16 deleterious_low_confidence(0.01) benign(0.164) TCGA-GN-A269-01 6 28497304 28497304 C T GPX5 Missense_Mutation p.S55F 0.16 deleterious(0.02) benign(0.361) TCGA-GN-A269-01 6 28541016 28541016 C T SCAND3 Missense_Mutation p.D884N 0.08 tolerated(0.22) possibly_damaging(0.86) TCGA-GN-A269-01 6 28543880 28543880 C T SCAND3 Missense_Mutation p.S201N 0.09 tolerated_low_confidence(0.13) benign(0.032) TCGA-GN-A269-01 6 30131610 30131610 C T TRIM15 Missense_Mutation p.S50F 0.10 tolerated(0.65) benign(0.01) TCGA-GN-A269-01 6 31079422 31079422 G A C6orf15 Silent p.I238I 0.20 TCGA-GN-A269-01 6 31895861 31895861 C T CFB Missense_Mutation p.P59L 0.09 deleterious(0) benign(0) TCGA-GN-A269-01 6 32012848 32012848 C T TNXB Missense_Mutation p.R50K 0.31 tolerated(0.96) benign(0.009) TCGA-GN-A269-01 6 32021267 32021267 C T TNXB Missense_Mutation p.V2895I 0.13 benign(0.198) TCGA-GN-A269-01 6 32024618 32024618 G A TNXB Missense_Mutation p.R2630C 0.17 possibly_damaging(0.804) TCGA-GN-A269-01 6 32038124 32038124 G A TNXB Silent p.T1686T 0.21 TCGA-GN-A269-01 6 33636831 33636831 G A ITPR3 Nonsense_Mutation p.W696* 0.15 TCGA-GN-A269-01 6 33636832 33636832 G C ITPR3 Missense_Mutation p.W696C 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-GN-A269-01 6 34101063 34101063 T C GRM4 Missense_Mutation p.K71E 0.10 tolerated(0.05) probably_damaging(0.991) TCGA-GN-A269-01 6 34949592 34949592 C T ANKS1A Silent p.D187D 0.14 TCGA-GN-A269-01 6 34949593 34949593 C T ANKS1A Silent p.L188L 0.15 TCGA-GN-A269-01 6 36976721 36976721 C T FGD2 Silent p.A60A 0.09 TCGA-GN-A269-01 6 40359880 40359880 G A LRFN2 Silent p.F724F 0.15 TCGA-GN-A269-01 6 41059431 41059431 A G NFYA Missense_Mutation p.M238V 0.17 tolerated(0.08) benign(0.204) TCGA-GN-A269-01 6 43612929 43612929 C T RSPH9 Missense_Mutation p.L32F 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-GN-A269-01 6 47682046 47682046 G A GPR115 Silent p.K355K 0.11 TCGA-GN-A269-01 6 47682440 47682440 C T GPR115 Silent p.L487L 0.12 TCGA-GN-A269-01 6 52878638 52878638 G A ICK Missense_Mutation p.P325L 0.15 tolerated(0.15) benign(0.008) TCGA-GN-A269-01 6 54173382 54173382 T C TINAG Missense_Mutation p.Y12H 0.17 tolerated_low_confidence(0.48) benign(0.004) TCGA-GN-A269-01 6 54806232 54806232 C T FAM83B Silent p.D821D 0.16 TCGA-GN-A269-01 6 54806613 54806613 G A FAM83B Silent p.Q948Q 0.15 TCGA-GN-A269-01 6 56481609 56481609 G T DST Intron 0.11 TCGA-GN-A269-01 6 64394342 64394342 G T PHF3 Missense_Mutation p.C240F 0.16 deleterious_low_confidence(0) benign(0.193) TCGA-GN-A269-01 6 70990730 70990730 G A COL9A1 Missense_Mutation p.P297S 0.15 unknown(0) TCGA-GN-A269-01 6 73000453 73000453 G A RIMS1 Missense_Mutation p.G1209E 0.29 tolerated(1) possibly_damaging(0.687) TCGA-GN-A269-01 6 74407162 74407162 C T CD109 Silent p.P38P 0.27 TCGA-GN-A269-01 6 7585382 7585382 G A DSP Silent p.E2629E 0.10 TCGA-GN-A269-01 6 75858121 75858121 G A COL12A1 Nonsense_Mutation p.R1414* 0.18 TCGA-GN-A269-01 6 76751792 76751792 G T IMPG1 Missense_Mutation p.P40Q 0.10 deleterious(0) probably_damaging(0.94) TCGA-GN-A269-01 6 84269917 84269917 C T SNAP91 Missense_Mutation p.G846E 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-GN-A269-01 6 90397082 90397082 A G MDN1 Missense_Mutation p.W3811R 0.11 probably_damaging(0.991) TCGA-GN-A269-01 6 99823983 99823983 T C COQ3 Missense_Mutation p.K188E 0.13 tolerated(0.15) possibly_damaging(0.474) TCGA-GN-A269-01 7 100153358 100153358 G A AGFG2 Missense_Mutation p.G293R 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-GN-A269-01 7 100355938 100355938 G A ZAN Silent p.K1141K 0.25 TCGA-GN-A269-01 7 100386863 100386863 C G ZAN Silent p.V2416V 0.08 TCGA-GN-A269-01 7 100551488 100551488 C T MUC3A Missense_Mutation p.S80L 0.11 tolerated(0.09) benign(0.139) TCGA-GN-A269-01 7 101747641 101747641 G A CUX1 Silent p.E155E 0.13 TCGA-GN-A269-01 7 103053498 103053498 G A SLC26A5 Silent p.Y118Y 0.14 TCGA-GN-A269-01 7 105615411 105615411 C T CDHR3 Silent p.I56I 0.29 TCGA-GN-A269-01 7 107334926 107334926 G T SLC26A4 Splice_Site p.X447_splice 0.17 TCGA-GN-A269-01 7 112462082 112462082 T A C7orf60 Missense_Mutation p.H312L 0.29 deleterious(0) probably_damaging(0.993) TCGA-GN-A269-01 7 122757627 122757627 C T SLC13A1 Silent p.L516L 0.09 TCGA-GN-A269-01 7 123150072 123150072 G A IQUB Missense_Mutation p.P139S 0.10 deleterious(0.01) possibly_damaging(0.825) TCGA-GN-A269-01 7 123517036 123517036 G A HYAL4 Missense_Mutation p.D425N 0.11 tolerated(0.07) probably_damaging(0.962) TCGA-GN-A269-01 7 131865476 131865476 G A PLXNA4 Missense_Mutation p.P1170S 0.16 tolerated(0.1) probably_damaging(1) TCGA-GN-A269-01 7 133986839 133986839 G A SLC35B4 Missense_Mutation p.S123F 0.15 deleterious(0) possibly_damaging(0.794) TCGA-GN-A269-01 7 135106988 135106988 G A CNOT4 Missense_Mutation p.R97C 0.20 deleterious(0) probably_damaging(0.995) TCGA-GN-A269-01 7 138264074 138264074 G A TRIM24 Silent p.Q794Q 0.29 TCGA-GN-A269-01 7 139657436 139657436 C T TBXAS1 Missense_Mutation p.S278L 0.40 tolerated(1) benign(0.3) TCGA-GN-A269-01 7 140035266 140035266 C T SLC37A3 Silent p.V477V 0.12 TCGA-GN-A269-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-GN-A269-01 7 141536960 141536960 C T PRSS37 Silent p.R173R 0.09 TCGA-GN-A269-01 7 142378840 142378840 G A MTRNR2L6 3'Flank 0.10 TCGA-GN-A269-01 7 143701780 143701780 G A OR6B1 Missense_Mutation p.G231R 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A269-01 7 143771756 143771756 G A OR2A25 Nonsense_Mutation p.W148* 0.16 TCGA-GN-A269-01 7 143792319 143792319 G A OR2A12 Missense_Mutation p.G40E 0.16 deleterious(0.02) possibly_damaging(0.621) TCGA-GN-A269-01 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.20 tolerated(0.68) benign(0.058) TCGA-GN-A269-01 7 147183040 147183040 C T CNTNAP2 Missense_Mutation p.H562Y 0.26 tolerated(1) benign(0.01) TCGA-GN-A269-01 7 148892733 148892733 C T ZNF282 Silent p.L18L 0.19 TCGA-GN-A269-01 7 150489193 150489193 G A TMEM176B Missense_Mutation p.S224F 0.23 deleterious(0.02) probably_damaging(1) TCGA-GN-A269-01 7 158663875 158663875 G A WDR60 Missense_Mutation p.E38K 0.32 deleterious(0) possibly_damaging(0.878) TCGA-GN-A269-01 7 18631235 18631235 C T HDAC9 Missense_Mutation p.S171F 0.31 tolerated(0.29) possibly_damaging(0.617) TCGA-GN-A269-01 7 20193960 20193960 G A MACC1 Silent p.I734I 0.08 TCGA-GN-A269-01 7 20762706 20762706 C T ABCB5 Missense_Mutation p.S830F 0.26 deleterious(0) probably_damaging(0.987) TCGA-GN-A269-01 7 24849512 24849512 C T OSBPL3 Missense_Mutation p.G744E 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 7 24902884 24902884 C T OSBPL3 Missense_Mutation p.E269K 0.16 tolerated(0.37) benign(0.08) TCGA-GN-A269-01 7 25266626 25266626 C T NPVF Missense_Mutation p.G53E 0.15 tolerated(0.29) benign(0.013) TCGA-GN-A269-01 7 2584620 2584620 G A BRAT1 Missense_Mutation p.T118I 0.31 tolerated(0.16) benign(0.006) TCGA-GN-A269-01 7 30791901 30791901 C T INMT Silent p.L45L 0.14 TCGA-GN-A269-01 7 31120239 31120239 G A ADCYAP1R1 Missense_Mutation p.E93K 0.17 tolerated_low_confidence(0.29) benign(0.057) TCGA-GN-A269-01 7 47832359 47832359 C T PKD1L1 Missense_Mutation p.E2798K 0.22 deleterious(0) probably_damaging(0.989) TCGA-GN-A269-01 7 50468256 50468256 C T IKZF1 Silent p.Y455Y 0.14 TCGA-GN-A269-01 7 55220311 55220311 A G EGFR Missense_Mutation p.N234S 0.14 tolerated(0.26) benign(0.01) TCGA-GN-A269-01 7 57193746 57193746 C T ZNF479 Missense_Mutation p.E81K 0.31 tolerated(0.08) benign(0.006) TCGA-GN-A269-01 7 6370657 6370657 T C FAM220A Silent p.A43A 0.16 TCGA-GN-A269-01 7 66489949 66489949 A G TYW1 Silent p.L308L 0.20 TCGA-GN-A269-01 7 72657494 72657494 C T GTF2IRD2P1 RNA 0.28 TCGA-GN-A269-01 7 7477065 7477065 C T COL28A1 Missense_Mutation p.G584E 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 7 7571399 7571399 C T COL28A1 Silent p.L87L 0.35 TCGA-GN-A269-01 7 76058725 76058725 G A ZP3 Intron 0.26 TCGA-GN-A269-01 7 82545710 82545710 G A PCLO Silent p.F3864F 0.30 TCGA-GN-A269-01 7 82764839 82764839 G A PCLO Missense_Mutation p.S676F 0.28 unknown(0) TCGA-GN-A269-01 7 86479772 86479772 C T GRM3 Silent p.I826I 0.15 TCGA-GN-A269-01 7 86509800 86509800 G A KIAA1324L Missense_Mutation p.S1026F 0.17 deleterious(0) possibly_damaging(0.61) TCGA-GN-A269-01 7 88962805 88962805 G A ZNF804B Missense_Mutation p.G170E 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 7 90747450 90747450 G A CDK14 Silent p.G437G 0.09 TCGA-GN-A269-01 7 91694579 91694579 A G AKAP9 Silent p.E2004E 0.21 TCGA-GN-A269-01 7 94230004 94230004 G A SGCE Missense_Mutation p.L331F 0.24 deleterious(0) probably_damaging(0.971) TCGA-GN-A269-01 7 94881099 94881099 G A PPP1R9A Missense_Mutation p.E808K 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-GN-A269-01 7 94913446 94913446 A T PPP1R9A Missense_Mutation p.Y1138F 0.26 tolerated(0.68) benign(0.398) TCGA-GN-A269-01 7 95217039 95217039 C T PDK4 Silent p.K290K 0.11 TCGA-GN-A269-01 7 97614222 97614222 C T OCM2 3'UTR 0.32 TCGA-GN-A269-01 7 99159542 99159542 C T ZNF655 Intron 0.33 TCGA-GN-A269-01 7 99708909 99708909 G A TAF6 Silent p.I349I 0.34 TCGA-GN-A269-01 8 101276405 101276405 A G RNF19A Missense_Mutation p.M442T 0.14 deleterious(0) possibly_damaging(0.718) TCGA-GN-A269-01 8 10390447 10390447 G A PRSS55 Missense_Mutation p.M210I 0.20 tolerated(0.07) benign(0.125) TCGA-GN-A269-01 8 109796614 109796614 G A TMEM74 Silent p.L238L 0.20 TCGA-GN-A269-01 8 125076659 125076659 C T FER1L6 Missense_Mutation p.H1134Y 0.18 tolerated(0.14) benign(0.001) TCGA-GN-A269-01 8 133044155 133044155 C T OC90 Missense_Mutation p.R335K 0.11 tolerated(0.08) benign(0.157) TCGA-GN-A269-01 8 133175718 133175718 G A KCNQ3 Missense_Mutation p.S420F 0.12 tolerated(0.08) benign(0.001) TCGA-GN-A269-01 8 135614828 135614828 G A ZFAT Silent p.D378D 0.23 TCGA-GN-A269-01 8 139164014 139164014 C T FAM135B Missense_Mutation p.E902K 0.21 tolerated_low_confidence(0.08) benign(0.282) TCGA-GN-A269-01 8 139833595 139833595 C T COL22A1 Missense_Mutation p.M343I 0.15 unknown(0) TCGA-GN-A269-01 8 143866604 143866604 G A LY6D 3'UTR 0.12 TCGA-GN-A269-01 8 144940581 144940581 G A EPPK1 Silent p.L2281L 0.09 TCGA-GN-A269-01 8 144941969 144941969 C T EPPK1 Missense_Mutation p.G1818E 0.23 benign(0.001) TCGA-GN-A269-01 8 144945289 144945289 G A EPPK1 Silent p.I711I 0.18 TCGA-GN-A269-01 8 17067464 17067464 C T ZDHHC2 Nonsense_Mutation p.R252* 0.39 TCGA-GN-A269-01 8 22140749 22140749 G A PIWIL2 Missense_Mutation p.E210K 0.17 tolerated(0.5) benign(0.003) TCGA-GN-A269-01 8 23702445 23702445 G A STC1 Silent p.F194F 0.16 TCGA-GN-A269-01 8 24259525 24259525 C T ADAMDEC1 Missense_Mutation p.P414S 0.09 tolerated(0.09) benign(0.181) TCGA-GN-A269-01 8 26366158 26366158 G A PNMA2 Silent p.V38V 0.18 TCGA-GN-A269-01 8 2830798 2830798 C T CSMD1 Missense_Mutation p.D2922N 0.13 probably_damaging(0.999) TCGA-GN-A269-01 8 30538528 30538528 C T GSR Missense_Mutation p.E438K 0.16 tolerated(0.07) benign(0.013) TCGA-GN-A269-01 8 3205627 3205627 G A CSMD1 Missense_Mutation p.P1121S 0.23 probably_damaging(0.999) TCGA-GN-A269-01 8 3263610 3263610 G A CSMD1 Silent p.S735S 0.15 TCGA-GN-A269-01 8 3263621 3263621 C T CSMD1 Missense_Mutation p.G732R 0.12 probably_damaging(1) TCGA-GN-A269-01 8 33449668 33449668 G A DUSP26 Missense_Mutation p.L167F 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A269-01 8 37633494 37633494 T C PROSC Missense_Mutation p.V219A 0.16 deleterious(0) benign(0.297) TCGA-GN-A269-01 8 38196056 38196056 G A WHSC1L1 Missense_Mutation p.P249S 0.19 tolerated(0.09) benign(0.002) TCGA-GN-A269-01 8 39872851 39872851 G A IDO2 Silent p.R331R 0.17 TCGA-GN-A269-01 8 41571742 41571742 G A ANK1 Missense_Mutation p.H611Y 0.17 deleterious(0.02) benign(0.006) TCGA-GN-A269-01 8 42611307 42611307 G A CHRNA6 Silent p.F345F 0.14 TCGA-GN-A269-01 8 52320904 52320904 C T PXDNL Missense_Mutation p.E1094K 0.17 deleterious(0) probably_damaging(0.997) TCGA-GN-A269-01 8 55534821 55534821 G A RP1 Missense_Mutation p.G254R 0.21 deleterious(0) possibly_damaging(0.83) TCGA-GN-A269-01 8 55540511 55540511 G A RP1 Missense_Mutation p.D1357N 0.16 deleterious(0.02) benign(0.019) TCGA-GN-A269-01 8 56436718 56436718 C T XKR4 Missense_Mutation p.P629S 0.20 tolerated(0.3) probably_damaging(0.996) TCGA-GN-A269-01 8 62289219 62289219 G A CLVS1 Missense_Mutation p.E171K 0.09 deleterious(0) possibly_damaging(0.845) TCGA-GN-A269-01 8 6794277 6794277 C T DEFA4 Missense_Mutation p.D49N 0.16 tolerated(0.37) probably_damaging(1) TCGA-GN-A269-01 8 71646537 71646537 C T XKR9 Missense_Mutation p.L334F 0.17 tolerated(0.06) benign(0.006) TCGA-GN-A269-01 8 76456189 76456189 C T HNF4G Missense_Mutation p.R78C 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A269-01 8 77767784 77767784 A G ZFHX4 Missense_Mutation p.N2876S 0.22 benign(0) TCGA-GN-A269-01 8 86250493 86250493 C T CA1 Missense_Mutation p.D75N 0.16 tolerated(0.31) benign(0.037) TCGA-GN-A269-01 8 95539567 95539567 G A KIAA1429 Missense_Mutation p.S302F 0.23 tolerated(0.11) probably_damaging(0.999) TCGA-GN-A269-01 8 97270800 97270800 C T MTERFD1 Missense_Mutation p.G40D 0.15 tolerated_low_confidence(0.25) benign(0.155) TCGA-GN-A269-01 9 104190787 104190787 G A ALDOB Missense_Mutation p.P115S 0.21 deleterious(0.04) benign(0.02) TCGA-GN-A269-01 9 107361077 107361077 G A OR13C5 Silent p.F206F 0.14 TCGA-GN-A269-01 9 107367196 107367196 G A OR13C2 Missense_Mutation p.S238F 0.18 tolerated(1) benign(0) TCGA-GN-A269-01 9 112144595 112144595 G A PTPN3 Silent p.L839L 0.22 TCGA-GN-A269-01 9 112144596 112144596 G A PTPN3 Silent p.V838V 0.22 TCGA-GN-A269-01 9 116812241 116812241 C T ZNF618 Missense_Mutation p.P794S 0.13 tolerated(0.1) probably_damaging(0.982) TCGA-GN-A269-01 9 117086350 117086350 G A ORM1 Missense_Mutation p.G104R 0.17 tolerated(0.1) probably_damaging(0.949) TCGA-GN-A269-01 9 119770528 119770528 G A ASTN2 Silent p.F427F 0.15 TCGA-GN-A269-01 9 126319965 126319965 G A DENND1A Silent p.L293L 0.22 TCGA-GN-A269-01 9 127289093 127289093 T C NR6A1 Missense_Mutation p.Y389C 0.21 deleterious(0) probably_damaging(0.99) TCGA-GN-A269-01 9 129154425 129154425 C T MVB12B Missense_Mutation p.R164W 0.20 deleterious(0) probably_damaging(0.971) TCGA-GN-A269-01 9 131117926 131117926 C T SLC27A4 Intron 0.23 TCGA-GN-A269-01 9 134072836 134072836 G A NUP214 Missense_Mutation p.E1319K 0.12 benign(0.428) TCGA-GN-A269-01 9 140379138 140379138 G A PNPLA7 Missense_Mutation p.P750S 0.17 tolerated(0.08) benign(0.073) TCGA-GN-A269-01 9 140481550 140481550 G A ZMYND19 Silent p.H76H 0.20 TCGA-GN-A269-01 9 140990947 140990947 C T CACNA1B Silent p.L1702L 0.17 TCGA-GN-A269-01 9 17787503 17787503 G A SH3GL2 Missense_Mutation p.E153K 0.11 deleterious(0) possibly_damaging(0.633) TCGA-GN-A269-01 9 17791333 17791333 G A SH3GL2 Splice_Site p.X243_splice 0.17 TCGA-GN-A269-01 9 21166419 21166419 C T IFNA21 Missense_Mutation p.E65K 0.19 tolerated(0.88) benign(0.213) TCGA-GN-A269-01 9 35079438 35079438 C T FANCG Silent p.K28K 0.21 TCGA-GN-A269-01 9 39171438 39171438 G A CNTNAP3 Missense_Mutation p.L421F 0.15 deleterious(0) probably_damaging(0.994) TCGA-GN-A269-01 9 73458035 73458035 G A TRPM3 Missense_Mutation p.R229C 0.15 deleterious(0) possibly_damaging(0.885) TCGA-GN-A269-01 9 77377921 77377921 C T TRPM6 Silent p.L1222L 0.17 TCGA-GN-A269-01 9 79117943 79117943 C T GCNT1 Missense_Mutation p.L216F 0.25 deleterious(0.02) probably_damaging(1) TCGA-GN-A269-01 9 79520926 79520926 G A PRUNE2 5'UTR 0.15 TCGA-GN-A269-01 9 90500082 90500082 C T SPATA31E1 Missense_Mutation p.P227L 0.24 deleterious(0.02) possibly_damaging(0.644) TCGA-GN-A269-01 9 94485998 94485998 C T ROR2 Silent p.L926L 0.12 TCGA-GN-A269-01 9 97718274 97718274 C T C9orf3 Missense_Mutation p.H617Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-GN-A269-01 9 99013729 99013729 G A HSD17B3 Missense_Mutation p.H142Y 0.17 tolerated(0.84) benign(0.013) TCGA-GN-A269-01 X 101581467 101581467 C T NXF2 3'UTR 0.24 TCGA-GN-A269-01 X 105179208 105179208 C T NRK Silent p.P1183P 0.25 TCGA-GN-A269-01 X 135572395 135572395 C T BRS3 Silent p.L180L 0.28 TCGA-GN-A269-01 X 139865858 139865858 C T CDR1 Missense_Mutation p.R225K 0.27 tolerated(0.9) benign(0.14) TCGA-GN-A269-01 X 1464208 1464208 G A IL3RA Splice_Site p.X22_splice 0.21 TCGA-GN-A269-01 X 151092868 151092868 G A MAGEA4 Silent p.R244R 0.27 TCGA-GN-A269-01 X 151821280 151821280 C T GABRQ Missense_Mutation p.P479S 0.30 tolerated(0.05) probably_damaging(0.97) TCGA-GN-A269-01 X 15574231 15574231 G A BMX Silent p.L663L 0.40 TCGA-GN-A269-01 X 18748339 18748339 T C PPEF1 Silent p.G29G 0.36 TCGA-GN-A269-01 X 30237634 30237634 G A MAGEB2 Missense_Mutation p.D313N 0.48 deleterious(0) probably_damaging(0.917) TCGA-GN-A269-01 X 3241355 3241355 G A MXRA5 Missense_Mutation p.R791C 0.31 deleterious(0) possibly_damaging(0.886) TCGA-GN-A269-01 X 50094333 50094333 G A CCNB3 Missense_Mutation p.D1352N 0.36 tolerated(1) benign(0.053) TCGA-GN-A269-01 X 50659565 50659565 G A BMP15 Silent p.K379K 0.23 TCGA-GN-A269-01 X 53250049 53250049 G A KDM5C Missense_Mutation p.P67L 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A269-01 X 57515352 57515352 C T FAAH2 Missense_Mutation p.P529L 0.34 deleterious(0) probably_damaging(0.996) TCGA-GN-A269-01 X 70511790 70511790 C T NONO Missense_Mutation p.H106Y 0.42 deleterious(0) benign(0.149) TCGA-GN-A269-01 X 75004814 75004814 C T MAGEE2 Missense_Mutation p.E25K 0.36 tolerated_low_confidence(0.41) benign(0.016) TCGA-GN-A269-01 X 78010822 78010822 G A LPAR4 Silent p.R152R 0.49 TCGA-GN-A269-01 X 79980546 79980546 G A BRWD3 Silent p.F469F 0.42 TCGA-GN-A269-01 X 84634463 84634463 C T POF1B 5'UTR 0.33 TCGA-GN-A269-01 X 86869550 86869550 C T KLHL4 Missense_Mutation p.S235F 0.35 tolerated(0.15) possibly_damaging(0.888) TCGA-GN-A269-01 X 91133285 91133285 T C PCDH11X Silent p.Y682Y 0.39 TCGA-GN-A269-01 X 99662260 99662260 C T PCDH19 Missense_Mutation p.E446K 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-GN-A269-01 Y 14838532 14838532 C T USP9Y Missense_Mutation p.R155C 0.38 deleterious(0) benign(0.359) TCGA-GN-A26A-06 10 105939630 105939630 C T WDR96 Missense_Mutation p.E784K 0.15 tolerated(0.08) benign(0.044) TCGA-GN-A26A-06 10 114903757 114903757 C T TCF7L2 Missense_Mutation p.P254L 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 10 115401183 115401183 C T NRAP Missense_Mutation p.G422R 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 10 115534631 115534631 G A PLEKHS1 Missense_Mutation p.E270K 0.29 tolerated(0.3) benign(0.397) TCGA-GN-A26A-06 10 128974537 128974537 C T FAM196A Silent p.R41R 0.11 TCGA-GN-A26A-06 10 15639266 15639266 C T ITGA8 Missense_Mutation p.M717I 0.21 deleterious(0.03) benign(0.314) TCGA-GN-A26A-06 10 27324073 27324073 G A ANKRD26 Silent p.S1102S 0.17 TCGA-GN-A26A-06 10 44139841 44139841 G A ZNF32 Missense_Mutation p.P160L 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-GN-A26A-06 10 48416352 48416352 C T GDF2 Missense_Mutation p.M114I 0.22 tolerated(0.45) benign(0.003) TCGA-GN-A26A-06 10 48428967 48428967 C T GDF10 Missense_Mutation p.D307N 0.25 tolerated(0.16) benign(0.219) TCGA-GN-A26A-06 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.35 deleterious(0) probably_damaging(0.998) TCGA-GN-A26A-06 10 61572503 61572503 C T CCDC6 Missense_Mutation p.R246K 0.28 tolerated(0.07) possibly_damaging(0.76) TCGA-GN-A26A-06 10 73558877 73558877 T G CDH23 Missense_Mutation p.I115S 0.19 deleterious(0) benign(0.038) TCGA-GN-A26A-06 10 88911479 88911479 G A FAM35A Missense_Mutation p.C123Y 0.33 tolerated(0.68) possibly_damaging(0.509) TCGA-GN-A26A-06 10 90433396 90433396 C T LIPF Missense_Mutation p.L251F 0.27 tolerated(0.21) benign(0.01) TCGA-GN-A26A-06 10 97951674 97951674 G A BLNK 3'UTR 0.23 TCGA-GN-A26A-06 10 99126525 99126525 C T RRP12 Silent p.E1063E 0.30 TCGA-GN-A26A-06 11 106810423 106810423 G A GUCY1A2 Silent p.F323F 0.30 TCGA-GN-A26A-06 11 1097261 1097261 T C MUC2 Missense_Mutation p.V2226A 0.54 unknown(0) TCGA-GN-A26A-06 11 1097262 1097262 G C MUC2 Silent p.V2226V 0.58 TCGA-GN-A26A-06 11 111784511 111784511 T A HSPB2 Silent p.P147P 0.51 TCGA-GN-A26A-06 11 117329567 117329567 C T DSCAML1 Missense_Mutation p.M1217I 0.40 deleterious(0.01) benign(0.026) TCGA-GN-A26A-06 11 119050970 119050970 C T NLRX1 Missense_Mutation p.P747L 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-GN-A26A-06 11 123988472 123988472 C T VWA5A Missense_Mutation p.P46S 0.44 deleterious(0.04) possibly_damaging(0.855) TCGA-GN-A26A-06 11 16816142 16816142 G A PLEKHA7 Nonsense_Mutation p.R880* 0.37 TCGA-GN-A26A-06 11 2437152 2437152 C T TRPM5 Missense_Mutation p.G371E 0.44 deleterious(0) probably_damaging(0.988) TCGA-GN-A26A-06 11 36595117 36595117 C T RAG1 Missense_Mutation p.S88L 0.46 tolerated_low_confidence(0.37) benign(0) TCGA-GN-A26A-06 11 5068359 5068359 C T OR52J3 Missense_Mutation p.L202F 0.36 deleterious(0.04) probably_damaging(1) TCGA-GN-A26A-06 11 51412281 51412281 C T OR4A5 Missense_Mutation p.G39R 0.56 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-GN-A26A-06 11 5842082 5842082 G A OR52N2 Missense_Mutation p.G173R 0.38 tolerated(0.56) probably_damaging(0.961) TCGA-GN-A26A-06 11 65272116 65272116 T A MALAT1 RNA 0.48 TCGA-GN-A26A-06 11 65790426 65790426 C T CATSPER1 Silent p.R441R 0.46 TCGA-GN-A26A-06 11 66457350 66457350 G A SPTBN2 Missense_Mutation p.R1959W 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 11 66633742 66633742 G A PC Silent p.I367I 0.53 TCGA-GN-A26A-06 11 68174156 68174156 C T LRP5 Missense_Mutation p.H656Y 0.35 tolerated(0.09) benign(0.105) TCGA-GN-A26A-06 11 78440605 78440605 G A TENM4 Silent p.V1074V 0.40 TCGA-GN-A26A-06 12 104049234 104049234 G A STAB2 Missense_Mutation p.E537K 0.32 tolerated(1) benign(0.003) TCGA-GN-A26A-06 12 109182779 109182779 G A SSH1 Missense_Mutation p.P712L 0.08 tolerated_low_confidence(0.22) benign(0.006) TCGA-GN-A26A-06 12 111785456 111785456 C T CUX2 Missense_Mutation p.S1263F 0.46 deleterious(0) probably_damaging(0.95) TCGA-GN-A26A-06 12 131283119 131283119 G A STX2 Missense_Mutation p.A246V 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-GN-A26A-06 12 132209970 132209970 C T SFSWAP Silent p.H209H 0.19 TCGA-GN-A26A-06 12 25031483 25031483 G A BCAT1 Missense_Mutation p.P176L 0.14 deleterious(0) possibly_damaging(0.663) TCGA-GN-A26A-06 12 25031484 25031484 G A BCAT1 Missense_Mutation p.P176S 0.14 deleterious(0) probably_damaging(0.928) TCGA-GN-A26A-06 12 40643669 40643669 T G LRRK2 Missense_Mutation p.F294V 0.56 tolerated(1) benign(0.001) TCGA-GN-A26A-06 12 41333227 41333227 C T CNTN1 Missense_Mutation p.A440V 0.27 deleterious(0) probably_damaging(0.998) TCGA-GN-A26A-06 12 46623362 46623362 C T SLC38A1 Silent p.K61K 0.34 TCGA-GN-A26A-06 12 51759262 51759262 C T GALNT6 Missense_Mutation p.G256R 0.50 deleterious(0) probably_damaging(0.99) TCGA-GN-A26A-06 12 52159762 52159762 C T SCN8A Missense_Mutation p.A951V 0.41 tolerated(0.09) benign(0.201) TCGA-GN-A26A-06 12 52159763 52159763 C T SCN8A Silent p.A951A 0.41 TCGA-GN-A26A-06 12 52282015 52282015 G A ANKRD33 Silent p.G15G 0.18 TCGA-GN-A26A-06 12 52981604 52981604 G A KRT72 Missense_Mutation p.A374V 0.25 deleterious(0) possibly_damaging(0.549) TCGA-GN-A26A-06 12 55715172 55715172 A T OR6C1 Missense_Mutation p.K263N 0.50 tolerated_low_confidence(0.17) benign(0.03) TCGA-GN-A26A-06 12 55726246 55726246 C T OR6C3 Silent p.F254F 0.24 TCGA-GN-A26A-06 12 5708726 5708726 C T ANO2 Silent p.S719S 0.45 TCGA-GN-A26A-06 12 58163128 58163128 G A METTL1 Silent p.F211F 0.09 TCGA-GN-A26A-06 12 75875727 75875727 G A GLIPR1 Silent p.L96L 0.46 TCGA-GN-A26A-06 12 8629986 8629986 G A CLEC6A Missense_Mutation p.G186R 0.68 tolerated(0.11) possibly_damaging(0.688) TCGA-GN-A26A-06 12 88547269 88547269 C T TMTC3 Missense_Mutation p.P131S 0.58 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26A-06 13 108861056 108861056 G A LIG4 Missense_Mutation p.S854F 0.39 deleterious(0.02) possibly_damaging(0.509) TCGA-GN-A26A-06 13 20279916 20279916 C T PSPC1 Missense_Mutation p.M424I 0.14 tolerated(0.42) benign(0.001) TCGA-GN-A26A-06 13 35619123 35619123 G A NBEA Missense_Mutation p.S189N 0.29 tolerated(0.53) benign(0.014) TCGA-GN-A26A-06 13 36909411 36909411 G A SPG20 Missense_Mutation p.S186F 0.31 deleterious(0) probably_damaging(0.976) TCGA-GN-A26A-06 14 100934432 100934432 G A WDR25 Silent p.R299R 0.22 TCGA-GN-A26A-06 14 101435314 101435314 G A SNORD114-12 RNA 0.27 TCGA-GN-A26A-06 14 105409088 105409088 G A AHNAK2 Missense_Mutation p.P4234S 0.20 probably_damaging(0.979) TCGA-GN-A26A-06 14 106237643 106237643 G A IGHG3 Missense_Mutation p.P34L 0.23 deleterious(0) benign(0.433) TCGA-GN-A26A-06 14 106641622 106641622 C T IGHV1-18 Missense_Mutation p.A98T 0.19 deleterious(0.05) possibly_damaging(0.51) TCGA-GN-A26A-06 14 22509134 22509134 G A TRAV20 Silent p.Q24Q 0.17 TCGA-GN-A26A-06 14 22564822 22564822 G A TRDV1 Silent p.A91A 0.23 TCGA-GN-A26A-06 14 24838810 24838810 C T NFATC4 Missense_Mutation p.P132L 0.22 tolerated(0.13) possibly_damaging(0.654) TCGA-GN-A26A-06 14 50267277 50267277 C T NEMF Missense_Mutation p.E745K 0.16 tolerated(0.38) benign(0.144) TCGA-GN-A26A-06 14 56763440 56763440 C T PELI2 Silent p.L273L 0.14 TCGA-GN-A26A-06 14 65041199 65041199 A G PPP1R36 Missense_Mutation p.E187G 0.23 deleterious(0.02) possibly_damaging(0.493) TCGA-GN-A26A-06 14 65390804 65390804 C T CHURC1-FNTB Silent p.S46S 0.21 TCGA-GN-A26A-06 14 70517766 70517766 G A SLC8A3 Missense_Mutation p.S697F 0.22 deleterious(0) probably_damaging(0.993) TCGA-GN-A26A-06 14 77319733 77319733 G A C14orf166B Missense_Mutation p.E330K 0.26 tolerated(0.05) benign(0.15) TCGA-GN-A26A-06 14 77901669 77901669 G A VIPAS39 Missense_Mutation p.S327F 0.15 deleterious(0) possibly_damaging(0.855) TCGA-GN-A26A-06 14 88946268 88946268 G A PTPN21 Missense_Mutation p.P503S 0.22 tolerated(0.67) benign(0) TCGA-GN-A26A-06 15 25442604 25442604 C T SNORD115-14 3'Flank 0.20 TCGA-GN-A26A-06 15 28502277 28502277 G A HERC2 Missense_Mutation p.S816F 0.26 benign(0.172) TCGA-GN-A26A-06 15 34531303 34531303 G A SLC12A6 Missense_Mutation p.A832V 0.32 deleterious(0.02) possibly_damaging(0.589) TCGA-GN-A26A-06 15 38808488 38808488 C T RASGRP1 Silent p.R195R 0.23 TCGA-GN-A26A-06 15 50518184 50518184 G A SLC27A2 Splice_Site p.X390_splice 0.40 TCGA-GN-A26A-06 15 51504711 51504711 C T CYP19A1 Missense_Mutation p.E357K 0.48 deleterious(0) probably_damaging(0.972) TCGA-GN-A26A-06 15 55965814 55965814 G A PRTG Missense_Mutation p.S536F 0.32 deleterious(0) probably_damaging(0.997) TCGA-GN-A26A-06 15 66624337 66624337 G A DIS3L Missense_Mutation p.G887D 0.18 deleterious(0) probably_damaging(0.988) TCGA-GN-A26A-06 15 76494550 76494550 G A C15orf27 Silent p.T322T 0.41 TCGA-GN-A26A-06 15 79749811 79749811 C T KIAA1024 Missense_Mutation p.S441L 0.21 tolerated(0.07) benign(0.046) TCGA-GN-A26A-06 16 11862319 11862319 G A ZC3H7A Silent p.F404F 0.27 TCGA-GN-A26A-06 16 1544321 1544321 G A TELO2 Silent p.R13R 0.29 TCGA-GN-A26A-06 16 1544322 1544322 G A TELO2 Missense_Mutation p.E14K 0.32 deleterious(0.05) benign(0.354) TCGA-GN-A26A-06 16 1747840 1747840 G A HN1L Missense_Mutation p.E122K 0.30 tolerated(0.13) benign(0.117) TCGA-GN-A26A-06 16 21122990 21122990 G A DNAH3 Silent p.L686L 0.12 TCGA-GN-A26A-06 16 25255331 25255331 G A ZKSCAN2 Missense_Mutation p.R586W 0.30 tolerated(0.07) benign(0.038) TCGA-GN-A26A-06 16 30037049 30037049 G A FAM57B Nonsense_Mutation p.Q180* 0.32 TCGA-GN-A26A-06 16 58576341 58576341 T C CNOT1 Silent p.R1522R 0.40 TCGA-GN-A26A-06 16 66656033 66656034 - T CMTM4 Frame_Shift_Ins p.N185Kfs*2 0.30 TCGA-GN-A26A-06 16 70954932 70954932 G A HYDIN Silent p.P2449P 0.34 TCGA-GN-A26A-06 16 87678398 87678398 C T JPH3 Missense_Mutation p.S306L 0.21 deleterious(0) probably_damaging(0.991) TCGA-GN-A26A-06 16 89614441 89614441 C T SPG7 Missense_Mutation p.A528V 0.32 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 17 10300150 10300150 G A MYH8 Silent p.A1444A 0.32 TCGA-GN-A26A-06 17 10364279 10364279 G A MYH4 Silent p.F367F 0.38 TCGA-GN-A26A-06 17 10431190 10431190 C T MYH2 Missense_Mutation p.G1249E 0.21 deleterious(0.02) benign(0.008) TCGA-GN-A26A-06 17 11757400 11757400 G A DNAH9 Missense_Mutation p.M3196I 0.22 benign(0.005) TCGA-GN-A26A-06 17 11797735 11797735 C T DNAH9 Silent p.F3776F 0.19 TCGA-GN-A26A-06 17 12626254 12626254 G A MYOCD Missense_Mutation p.R115Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-GN-A26A-06 17 1585565 1585565 C T PRPF8 Missense_Mutation p.A98T 0.23 deleterious(0) probably_damaging(0.957) TCGA-GN-A26A-06 17 16699419 16699419 G A CCDC144A 3'UTR 0.22 TCGA-GN-A26A-06 17 27042098 27042098 C T RAB34 Missense_Mutation p.V243M 0.20 tolerated(0.17) benign(0.034) TCGA-GN-A26A-06 17 27284987 27284987 C T SEZ6 Silent p.E760E 0.25 TCGA-GN-A26A-06 17 27893573 27893573 C T ABHD15 Missense_Mutation p.D138N 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26A-06 17 27994162 27994162 T C SSH2 Missense_Mutation p.I270V 0.38 tolerated(0.51) possibly_damaging(0.773) TCGA-GN-A26A-06 17 3030585 3030585 G A OR1G1 Silent p.I87I 0.45 TCGA-GN-A26A-06 17 30376191 30376191 C T LRRC37B Silent p.F818F 0.49 TCGA-GN-A26A-06 17 34105972 34105972 G C MMP28 Missense_Mutation p.A100G 0.15 tolerated(0.17) benign(0.009) TCGA-GN-A26A-06 17 3583028 3583028 C T P2RX5 Missense_Mutation p.G372E 0.16 tolerated(0.48) benign(0.001) TCGA-GN-A26A-06 17 3593971 3593971 C T P2RX5 Missense_Mutation p.E122K 0.22 tolerated(0.31) benign(0.081) TCGA-GN-A26A-06 17 37791921 37791921 G A PPP1R1B Silent p.L169L 0.30 TCGA-GN-A26A-06 17 38024550 38024550 G A ZPBP2 5'UTR 0.12 TCGA-GN-A26A-06 17 39594521 39594521 G A KRT38 Silent p.F355F 0.40 TCGA-GN-A26A-06 17 40714459 40714459 C T COASY Silent p.P10P 0.24 TCGA-GN-A26A-06 17 40714460 40714460 C T COASY Nonsense_Mutation p.R11* 0.24 TCGA-GN-A26A-06 17 41166293 41166293 G A IFI35 Missense_Mutation p.V282I 0.29 tolerated(0.17) benign(0.31) TCGA-GN-A26A-06 17 42476850 42476850 G A GPATCH8 Silent p.S865S 0.13 TCGA-GN-A26A-06 17 46863592 46863592 C T TTLL6 Silent p.K565K 0.16 TCGA-GN-A26A-06 17 47014475 47014475 A G SNF8 Missense_Mutation p.F86L 0.17 deleterious(0) possibly_damaging(0.895) TCGA-GN-A26A-06 17 47295174 47295174 C T ABI3 Missense_Mutation p.P120L 0.29 tolerated(0.18) possibly_damaging(0.681) TCGA-GN-A26A-06 17 47295175 47295175 C T ABI3 Silent p.P120P 0.28 TCGA-GN-A26A-06 17 47793567 47793567 G A FAM117A Missense_Mutation p.P341S 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 17 48602289 48602289 G A MYCBPAP Missense_Mutation p.E606K 0.14 deleterious(0.04) probably_damaging(0.928) TCGA-GN-A26A-06 17 48646648 48646648 C T CACNA1G Silent p.I159I 0.11 TCGA-GN-A26A-06 17 4937972 4937972 G A SLC52A1 5'UTR 0.27 TCGA-GN-A26A-06 17 60821840 60821840 C T MARCH10 Silent p.R144R 0.16 TCGA-GN-A26A-06 17 61601675 61601675 G A KCNH6 Silent p.Q84Q 0.33 TCGA-GN-A26A-06 17 66985995 66985995 T C ABCA9 Missense_Mutation p.K1305R 0.48 deleterious(0.04) benign(0.076) TCGA-GN-A26A-06 17 73658685 73658685 G A RECQL5 Silent p.I215I 0.34 TCGA-GN-A26A-06 17 79573742 79573742 G A NPLOC4 Missense_Mutation p.P210L 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 17 79573743 79573743 G A NPLOC4 Missense_Mutation p.P210S 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 17 80382341 80382341 G A HEXDC Silent p.E52E 0.36 TCGA-GN-A26A-06 18 28581592 28581592 C T DSC3 Missense_Mutation p.D743N 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A26A-06 18 28919979 28919979 G A DSG1 Missense_Mutation p.V560I 0.24 tolerated(1) benign(0.008) TCGA-GN-A26A-06 18 40695455 40695455 G A RIT2 Silent p.S10S 0.20 TCGA-GN-A26A-06 18 44266166 44266166 C T ST8SIA5 Silent p.R180R 0.19 TCGA-GN-A26A-06 18 44559736 44559736 G A TCEB3B Missense_Mutation p.P634S 0.26 tolerated(0.06) possibly_damaging(0.784) TCGA-GN-A26A-06 18 47778002 47778002 C T CCDC11 Missense_Mutation p.R209Q 0.42 deleterious(0.02) benign(0.319) TCGA-GN-A26A-06 18 6978348 6978348 C T LAMA1 Missense_Mutation p.E2013K 0.37 tolerated(0.1) benign(0.201) TCGA-GN-A26A-06 18 72999751 72999751 G A TSHZ1 Missense_Mutation p.A752T 0.27 tolerated(0.62) benign(0.003) TCGA-GN-A26A-06 19 10893721 10893721 C T DNM2 Silent p.F258F 0.18 TCGA-GN-A26A-06 19 1391044 1391044 C T NDUFS7 Missense_Mutation p.R135C 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-GN-A26A-06 19 14142700 14142700 G A IL27RA Missense_Mutation p.G6S 0.27 tolerated_low_confidence(0.22) benign(0.011) TCGA-GN-A26A-06 19 14266174 14266174 C T LPHN1 Silent p.K1102K 0.31 TCGA-GN-A26A-06 19 17108003 17108003 G A CPAMD8 Missense_Mutation p.P385L 0.28 tolerated(0.15) benign(0.12) TCGA-GN-A26A-06 19 1789468 1789468 G A ATP8B3 Missense_Mutation p.R913C 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 19 2851627 2851627 A G ZNF555 Missense_Mutation p.T98A 0.13 tolerated(0.08) benign(0.001) TCGA-GN-A26A-06 19 3114975 3114975 G A GNA11 Silent p.L170L 0.39 TCGA-GN-A26A-06 19 3114976 3114976 G A GNA11 Missense_Mutation p.G171S 0.38 tolerated(0.64) benign(0.002) TCGA-GN-A26A-06 19 35175586 35175586 T C ZNF302 Missense_Mutation p.I215T 0.23 tolerated(0.39) benign(0.005) TCGA-GN-A26A-06 19 3527703 3527703 C T FZR1 Missense_Mutation p.P182L 0.26 deleterious(0) probably_damaging(0.977) TCGA-GN-A26A-06 19 3527704 3527704 C T FZR1 Silent p.P182P 0.23 TCGA-GN-A26A-06 19 36637136 36637136 C T CAPNS1 Nonsense_Mutation p.R215* 0.18 TCGA-GN-A26A-06 19 40222086 40222086 C T CLC Silent p.V121V 0.13 TCGA-GN-A26A-06 19 43348712 43348712 G A PSG10P RNA 0.31 TCGA-GN-A26A-06 19 43585315 43585315 C T PSG2 Missense_Mutation p.D50N 0.17 tolerated(0.14) benign(0.396) TCGA-GN-A26A-06 19 45316532 45316532 G A BCAM Missense_Mutation p.G177E 0.26 deleterious(0) probably_damaging(0.977) TCGA-GN-A26A-06 19 47941107 47941107 T C SLC8A2 Missense_Mutation p.K670R 0.21 tolerated(0.08) benign(0.018) TCGA-GN-A26A-06 19 47941108 47941108 T C SLC8A2 Missense_Mutation p.K670E 0.22 deleterious(0) benign(0.355) TCGA-GN-A26A-06 19 50882384 50882384 C T NR1H2 Silent p.F291F 0.19 TCGA-GN-A26A-06 19 51135778 51135778 C T SYT3 Missense_Mutation p.E147K 0.20 tolerated(0.53) benign(0.084) TCGA-GN-A26A-06 19 51462556 51462556 G A KLK6 Missense_Mutation p.P200L 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 19 51994940 51994940 C T SIGLEC12 Silent p.Q581Q 0.28 TCGA-GN-A26A-06 19 54545030 54545030 C A VSTM1 Intron 0.32 TCGA-GN-A26A-06 19 55670558 55670558 C T DNAAF3 Missense_Mutation p.G567R 0.25 tolerated_low_confidence(0.74) benign(0.009) TCGA-GN-A26A-06 19 5667119 5667119 G A SAFB Silent p.G799G 0.22 TCGA-GN-A26A-06 19 5667120 5667120 G A SAFB Missense_Mutation p.G800S 0.22 tolerated(0.15) unknown(0) TCGA-GN-A26A-06 19 57647093 57647093 G A ZIM3 Silent p.F204F 0.20 TCGA-GN-A26A-06 19 57931243 57931243 G C AC003002.6 Missense_Mutation p.S140T 0.19 tolerated(0.54) benign(0.352) TCGA-GN-A26A-06 19 6147545 6147545 C T ACSBG2 Silent p.T52T 0.17 TCGA-GN-A26A-06 19 6821821 6821821 G A VAV1 Missense_Mutation p.E134K 0.17 tolerated(0.65) benign(0.021) TCGA-GN-A26A-06 19 8146297 8146297 G A FBN3 Silent p.F2427F 0.34 TCGA-GN-A26A-06 19 8194143 8194143 G A FBN3 Silent p.A717A 0.13 TCGA-GN-A26A-06 19 8491579 8491579 C T MARCH2 Missense_Mutation p.A88V 0.14 tolerated(0.2) benign(0.257) TCGA-GN-A26A-06 19 899628 899628 G A R3HDM4 Missense_Mutation p.A207V 0.42 deleterious(0.02) possibly_damaging(0.749) TCGA-GN-A26A-06 19 9066695 9066695 C T MUC16 Missense_Mutation p.M6917I 0.14 unknown(0) TCGA-GN-A26A-06 19 9074139 9074139 G A MUC16 Missense_Mutation p.P4436L 0.27 unknown(0) TCGA-GN-A26A-06 1 149877521 149877521 G A SV2A Silent p.I652I 0.30 TCGA-GN-A26A-06 1 151678358 151678358 C G CELF3 Missense_Mutation p.G404R 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 1 155220925 155220925 C T FAM189B Missense_Mutation p.G309S 0.34 tolerated(0.74) benign(0.016) TCGA-GN-A26A-06 1 155236673 155236674 - C CLK2 Frame_Shift_Ins p.M228Dfs*3 0.24 TCGA-GN-A26A-06 1 155631048 155631048 A G YY1AP1 Intron 0.35 TCGA-GN-A26A-06 1 156046378 156046378 C T MEX3A Missense_Mutation p.R517Q 0.31 tolerated(0.22) probably_damaging(0.921) TCGA-GN-A26A-06 1 156905999 156905999 G A ARHGEF11 Intron 0.20 TCGA-GN-A26A-06 1 158612245 158612245 G A SPTA1 Silent p.L1565L 0.49 TCGA-GN-A26A-06 1 159683548 159683548 C T CRP Missense_Mutation p.E148K 0.36 tolerated(0.13) benign(0.035) TCGA-GN-A26A-06 1 161954616 161954616 C T OLFML2B Silent p.R543R 0.13 TCGA-GN-A26A-06 1 17965056 17965056 G A ARHGEF10L Splice_Site p.X682_splice 0.37 TCGA-GN-A26A-06 1 18149669 18149669 G A ACTL8 Missense_Mutation p.D56N 0.26 tolerated(0.19) benign(0.023) TCGA-GN-A26A-06 1 182027208 182027208 C T ZNF648 Intron 0.22 TCGA-GN-A26A-06 1 185987424 185987424 C T HMCN1 Missense_Mutation p.R1804W 0.37 possibly_damaging(0.883) TCGA-GN-A26A-06 1 203134427 203134427 C T ADORA1 Missense_Mutation p.A127V 0.42 tolerated(0.07) probably_damaging(0.982) TCGA-GN-A26A-06 1 207112655 207112655 G A PIGR Missense_Mutation p.T66I 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 1 210577938 210577938 C T HHAT Missense_Mutation p.S201F 0.10 deleterious(0) possibly_damaging(0.859) TCGA-GN-A26A-06 1 222716939 222716939 C T HHIPL2 Missense_Mutation p.R305Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-GN-A26A-06 1 222750981 222750981 G A TAF1A Missense_Mutation p.S137F 0.32 deleterious(0.02) possibly_damaging(0.902) TCGA-GN-A26A-06 1 222920396 222920396 G A FAM177B Missense_Mutation p.G72R 0.35 tolerated(0.21) benign(0.114) TCGA-GN-A26A-06 1 223567284 223567284 C T C1orf65 Missense_Mutation p.P156L 0.38 tolerated(0.15) benign(0.139) TCGA-GN-A26A-06 1 226179048 226179048 G A SDE2 Silent p.S179S 0.26 TCGA-GN-A26A-06 1 226566965 226566965 G A PARP1 Silent p.H541H 0.17 TCGA-GN-A26A-06 1 231403528 231403528 G T GNPAT Missense_Mutation p.W386C 0.35 deleterious(0) probably_damaging(0.982) TCGA-GN-A26A-06 1 2409912 2409912 C T PLCH2 Intron 0.39 TCGA-GN-A26A-06 1 2452661 2452661 T G PANK4 Missense_Mutation p.I101L 0.32 tolerated(0.27) benign(0.019) TCGA-GN-A26A-06 1 247875253 247875253 C T OR6F1 Missense_Mutation p.D269N 0.30 tolerated(0.31) benign(0.11) TCGA-GN-A26A-06 1 248224006 248224006 C T OR2L3 Missense_Mutation p.S8L 0.35 deleterious(0.05) benign(0.016) TCGA-GN-A26A-06 1 248637424 248637424 G A OR2T3 Missense_Mutation p.G258D 0.21 deleterious(0) probably_damaging(0.964) TCGA-GN-A26A-06 1 33583638 33583638 G C ADC Missense_Mutation p.A389P 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A26A-06 1 33954787 33954787 C T ZSCAN20 Missense_Mutation p.S226F 0.19 tolerated(0.17) probably_damaging(0.94) TCGA-GN-A26A-06 1 35370147 35370147 G A DLGAP3 Missense_Mutation p.P280S 0.10 tolerated(0.27) benign(0.026) TCGA-GN-A26A-06 1 3669219 3669219 G A CCDC27 Silent p.S58S 0.15 TCGA-GN-A26A-06 1 44461725 44461725 C T CCDC24 Nonsense_Mutation p.R273* 0.40 TCGA-GN-A26A-06 1 45799205 45799205 T A MUTYH Silent p.V73V 0.41 TCGA-GN-A26A-06 1 55279566 55279566 T G C1orf177 Missense_Mutation p.V281G 0.14 deleterious(0.04) benign(0.066) TCGA-GN-A26A-06 1 6195313 6195313 C T CHD5 Silent p.R949R 0.51 TCGA-GN-A26A-06 1 78097898 78097898 G A ZZZ3 Missense_Mutation p.S381L 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A26A-06 1 85029074 85029074 G A CTBS Missense_Mutation p.P275S 0.12 deleterious(0.03) possibly_damaging(0.58) TCGA-GN-A26A-06 1 85029075 85029075 G A CTBS Silent p.V274V 0.13 TCGA-GN-A26A-06 20 10030446 10030446 C T ANKEF1 Missense_Mutation p.S410L 0.42 deleterious(0) possibly_damaging(0.559) TCGA-GN-A26A-06 20 2542553 2542553 G A TMC2 Missense_Mutation p.E151K 0.34 tolerated(0.17) probably_damaging(0.989) TCGA-GN-A26A-06 20 2594089 2594089 C T TMC2 Intron 0.33 TCGA-GN-A26A-06 20 30408346 30408346 C T MYLK2 Missense_Mutation p.S157F 0.16 deleterious(0.03) benign(0.157) TCGA-GN-A26A-06 20 33711741 33711741 G A EDEM2 Missense_Mutation p.P356S 0.37 tolerated(0.24) benign(0.026) TCGA-GN-A26A-06 20 3655171 3655171 G A ADAM33 Missense_Mutation p.P194S 0.23 tolerated(0.8) benign(0.001) TCGA-GN-A26A-06 20 60705702 60705702 C T LSM14B Nonsense_Mutation p.R264* 0.35 TCGA-GN-A26A-06 21 39672055 39672055 G A KCNJ15 Missense_Mutation p.S291N 0.15 tolerated(0.06) possibly_damaging(0.881) TCGA-GN-A26A-06 21 41561001 41561001 C T DSCAM Missense_Mutation p.E841K 0.40 tolerated(0.15) benign(0.403) TCGA-GN-A26A-06 21 43732319 43732319 G A TFF3 3'UTR 0.10 TCGA-GN-A26A-06 21 44592263 44592263 C T CRYAA Missense_Mutation p.S132F 0.28 deleterious(0) possibly_damaging(0.819) TCGA-GN-A26A-06 21 46596523 46596523 C T ADARB1 Nonsense_Mutation p.Q303* 0.17 TCGA-GN-A26A-06 21 47841920 47841920 G A PCNT Missense_Mutation p.G2354E 0.19 benign(0.153) TCGA-GN-A26A-06 22 17288712 17288712 G A XKR3 Silent p.I84I 0.41 TCGA-GN-A26A-06 22 19130249 19130249 G A DGCR14 Silent p.P98P 0.49 TCGA-GN-A26A-06 22 24217412 24217412 C T AP000350.10 Silent p.L95L 0.36 TCGA-GN-A26A-06 22 26777997 26777997 G A SEZ6L 3'Flank 0.12 TCGA-GN-A26A-06 22 46930320 46930320 G A CELSR1 Silent p.A916A 0.11 TCGA-GN-A26A-06 22 50313864 50313864 C T CRELD2 Silent p.C128C 0.44 TCGA-GN-A26A-06 22 50845137 50845137 G A PPP6R2 Missense_Mutation p.E83K 0.13 deleterious(0) probably_damaging(0.975) TCGA-GN-A26A-06 2 100209873 100209873 C T AFF3 Silent p.R775R 0.22 TCGA-GN-A26A-06 2 103431314 103431314 C T TMEM182 Missense_Mutation p.P193S 0.28 tolerated(0.06) probably_damaging(0.992) TCGA-GN-A26A-06 2 107460052 107460052 C T ST6GAL2 Missense_Mutation p.D128N 0.20 benign(0.004) TCGA-GN-A26A-06 2 108868931 108868931 C T SULT1C3 Missense_Mutation p.P95S 0.33 deleterious(0.02) possibly_damaging(0.451) TCGA-GN-A26A-06 2 1133330 1133330 C T SNTG2 Silent p.F116F 0.50 TCGA-GN-A26A-06 2 113765561 113765561 C T IL36A Silent p.I139I 0.43 TCGA-GN-A26A-06 2 116538498 116538498 C T DPP10 Silent p.F474F 0.20 TCGA-GN-A26A-06 2 11802339 11802339 G A NTSR2 Missense_Mutation p.P218S 0.32 deleterious(0.01) probably_damaging(1) TCGA-GN-A26A-06 2 158974375 158974375 G A UPP2 Missense_Mutation p.E184K 0.45 deleterious(0) probably_damaging(0.998) TCGA-GN-A26A-06 2 160889546 160889546 C T PLA2R1 Silent p.E255E 0.17 TCGA-GN-A26A-06 2 165947448 165947448 C T SCN3A Missense_Mutation p.G1739R 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 2 165984140 165984140 C T SCN3A Splice_Site p.X1131_splice 0.29 TCGA-GN-A26A-06 2 166901553 166901553 C T SCN1A Silent p.Q554Q 0.18 TCGA-GN-A26A-06 2 168105435 168105435 G A XIRP2 Silent p.R2511R 0.32 TCGA-GN-A26A-06 2 169836414 169836414 G A ABCB11 Missense_Mutation p.R387C 0.27 deleterious(0.02) benign(0.035) TCGA-GN-A26A-06 2 170135937 170135937 G A LRP2 Missense_Mutation p.L504F 0.25 probably_damaging(0.978) TCGA-GN-A26A-06 2 179408933 179408933 C T TTN Missense_Mutation p.R32008K 0.24 TCGA-GN-A26A-06 2 196720582 196720582 C T DNAH7 Missense_Mutation p.D2850N 0.35 tolerated(0.19) benign(0.038) TCGA-GN-A26A-06 2 197021346 197021346 A G STK17B Missense_Mutation p.I51T 0.16 tolerated(0.23) benign(0.421) TCGA-GN-A26A-06 2 203921152 203921152 A C NBEAL1 Missense_Mutation p.N103T 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-GN-A26A-06 2 206641046 206641046 C T NRP2 Intron 0.37 TCGA-GN-A26A-06 2 219871203 219871203 G A CCDC108 Missense_Mutation p.P1568L 0.34 deleterious(0.02) benign(0.056) TCGA-GN-A26A-06 2 219871204 219871204 G A CCDC108 Missense_Mutation p.P1568S 0.33 tolerated(0.31) benign(0.217) TCGA-GN-A26A-06 2 227661607 227661607 G A IRS1 Silent p.S616S 0.24 TCGA-GN-A26A-06 2 227924291 227924291 G A COL4A4 Missense_Mutation p.S738F 0.26 probably_damaging(0.951) TCGA-GN-A26A-06 2 227958912 227958912 C T COL4A4 Missense_Mutation p.G433E 0.42 probably_damaging(0.993) TCGA-GN-A26A-06 2 228884185 228884185 G A SPHKAP Missense_Mutation p.A462V 0.11 tolerated(0.54) benign(0.005) TCGA-GN-A26A-06 2 26699830 26699830 C T OTOF Missense_Mutation p.D869N 0.15 tolerated(0.24) probably_damaging(0.974) TCGA-GN-A26A-06 2 27427784 27427784 G A SLC5A6 Silent p.P250P 0.17 TCGA-GN-A26A-06 2 27729363 27729363 C T GCKR Silent p.I295I 0.51 TCGA-GN-A26A-06 2 3193070 3193070 C T TSSC1 3'UTR 0.47 TCGA-GN-A26A-06 2 46739088 46739088 G A ATP6V1E2 3'UTR 0.42 TCGA-GN-A26A-06 2 69870200 69870200 A T AAK1 5'UTR 0.44 TCGA-GN-A26A-06 2 70402819 70402819 G A C2orf42 Missense_Mutation p.S342L 0.18 tolerated(0.08) benign(0.082) TCGA-GN-A26A-06 2 89416962 89416962 G A IGKV1-17 Silent p.S74S 0.18 TCGA-GN-A26A-06 2 95481640 95481640 C A ANKRD20A8P RNA 0.26 TCGA-GN-A26A-06 3 108219035 108219035 C T MYH15 Silent p.G162G 0.38 TCGA-GN-A26A-06 3 108219036 108219036 C T MYH15 Missense_Mutation p.G162E 0.36 deleterious(0) possibly_damaging(0.801) TCGA-GN-A26A-06 3 108572518 108572518 G A TRAT1 Missense_Mutation p.G119R 0.29 tolerated(0.09) possibly_damaging(0.554) TCGA-GN-A26A-06 3 111658337 111658337 G A PHLDB2 Missense_Mutation p.D716N 0.19 deleterious(0) benign(0.096) TCGA-GN-A26A-06 3 11887979 11887979 C T TAMM41 Silent p.Q44Q 0.19 TCGA-GN-A26A-06 3 121341537 121341537 G A FBXO40 Missense_Mutation p.G421R 0.15 deleterious(0) probably_damaging(0.995) TCGA-GN-A26A-06 3 126211324 126211324 G T UROC1 Missense_Mutation p.D575E 0.48 deleterious(0.01) benign(0.014) TCGA-GN-A26A-06 3 12875514 12875514 G A CAND2 3'UTR 0.35 TCGA-GN-A26A-06 3 130743531 130743531 A G ASTE1 Missense_Mutation p.F207S 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 3 134898712 134898712 G A EPHB1 Silent p.G590G 0.41 TCGA-GN-A26A-06 3 141011771 141011771 G A ACPL2 Silent p.L389L 0.18 TCGA-GN-A26A-06 3 141011772 141011772 G A ACPL2 Missense_Mutation p.G390S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A26A-06 3 150916784 150916784 A C GPR171 Missense_Mutation p.F130L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26A-06 3 164905895 164905895 G A SLITRK3 Silent p.P908P 0.53 TCGA-GN-A26A-06 3 164905896 164905896 G A SLITRK3 Missense_Mutation p.P908L 0.49 deleterious(0.02) probably_damaging(0.922) TCGA-GN-A26A-06 3 167183320 167183320 T A SERPINI2 Missense_Mutation p.N207I 0.43 deleterious(0) benign(0.299) TCGA-GN-A26A-06 3 195000119 195000119 G A ACAP2 Nonsense_Mutation p.Q759* 0.15 TCGA-GN-A26A-06 3 38793930 38793930 C T SCN10A Missense_Mutation p.R512Q 0.55 tolerated(0.22) benign(0.004) TCGA-GN-A26A-06 3 45130573 45130573 C T CDCP1 Missense_Mutation p.G685E 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-GN-A26A-06 3 46620588 46620588 G A TDGF1 Silent p.V13V 0.41 TCGA-GN-A26A-06 3 49002366 49002366 C T ARIH2 Missense_Mutation p.S113F 0.13 deleterious(0.03) benign(0.172) TCGA-GN-A26A-06 3 51863696 51863696 G A IQCF3 Missense_Mutation p.E12K 0.17 tolerated(0.86) benign(0.002) TCGA-GN-A26A-06 3 51981903 51981903 C T PARP3 Missense_Mutation p.T482I 0.17 tolerated(0.07) benign(0.205) TCGA-GN-A26A-06 3 52456779 52456779 G A PHF7 Silent p.R267R 0.13 TCGA-GN-A26A-06 3 52521747 52521747 C T NISCH Missense_Mutation p.R747W 0.25 deleterious(0) benign(0.098) TCGA-GN-A26A-06 3 52561704 52561704 G A NT5DC2 Silent p.P322P 0.19 TCGA-GN-A26A-06 3 55052306 55052306 G A CACNA2D3 Silent p.K983K 0.20 TCGA-GN-A26A-06 3 67559257 67559257 G A SUCLG2 Missense_Mutation p.P244L 0.27 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 3 8672581 8672581 G A SSUH2 Silent p.S145S 0.30 TCGA-GN-A26A-06 3 8672582 8672582 G A SSUH2 Missense_Mutation p.S145F 0.33 tolerated(0.06) benign(0.082) TCGA-GN-A26A-06 4 103498131 103498131 G A NFKB1 Missense_Mutation p.G169E 0.11 deleterious(0.02) benign(0.085) TCGA-GN-A26A-06 4 107845214 107845214 T C DKK2 Missense_Mutation p.E226G 0.28 deleterious(0) probably_damaging(0.979) TCGA-GN-A26A-06 4 119174728 119174728 G A NDST3 Missense_Mutation p.G825E 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 4 122835986 122835986 G A TRPC3 Silent p.A430A 0.40 TCGA-GN-A26A-06 4 122854249 122854249 C T TRPC3 Intron 0.25 TCGA-GN-A26A-06 4 123314757 123314757 C T ADAD1 Silent p.F181F 0.17 TCGA-GN-A26A-06 4 126336393 126336393 C T FAT4 Missense_Mutation p.P2092L 0.16 benign(0.008) TCGA-GN-A26A-06 4 148800397 148800397 G A ARHGAP10 Missense_Mutation p.G283S 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-GN-A26A-06 4 148800398 148800398 G A ARHGAP10 Missense_Mutation p.G283D 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 4 164272599 164272599 G A NPY5R Missense_Mutation p.D392N 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 4 166795052 166795052 G A TLL1 5'UTR 0.45 TCGA-GN-A26A-06 4 187455038 187455038 G A MTNR1A Silent p.F286F 0.25 TCGA-GN-A26A-06 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.17 deleterious(0) possibly_damaging(0.756) TCGA-GN-A26A-06 4 20591305 20591305 G A SLIT2 Missense_Mutation p.D1043N 0.16 tolerated(0.18) benign(0.009) TCGA-GN-A26A-06 4 6114543 6114543 G A JAKMIP1 Missense_Mutation p.P12L 0.24 deleterious(0.01) benign(0.208) TCGA-GN-A26A-06 4 77003171 77003171 G A ART3 Missense_Mutation p.M88I 0.14 tolerated(0.19) benign(0.009) TCGA-GN-A26A-06 4 77816807 77816807 G A SOWAHB Silent p.F732F 0.23 TCGA-GN-A26A-06 4 80328679 80328679 G A GK2 Missense_Mutation p.P226S 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-GN-A26A-06 4 8472856 8472856 C T TRMT44 Missense_Mutation p.T658I 0.41 deleterious(0.05) benign(0.064) TCGA-GN-A26A-06 5 123977034 123977034 G A ZNF608 Missense_Mutation p.P1454L 0.19 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 5 131329801 131329801 G A ACSL6 Missense_Mutation p.L65F 0.19 tolerated(0.15) benign(0.037) TCGA-GN-A26A-06 5 133473780 133473780 C T TCF7 Missense_Mutation p.P158S 0.40 tolerated(0.82) probably_damaging(0.986) TCGA-GN-A26A-06 5 135583207 135583207 T C TRPC7 Missense_Mutation p.N599S 0.18 tolerated(0.1) benign(0.417) TCGA-GN-A26A-06 5 13839615 13839615 G A DNAH5 Missense_Mutation p.P1911L 0.16 possibly_damaging(0.713) TCGA-GN-A26A-06 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.15 deleterious(0) possibly_damaging(0.492) TCGA-GN-A26A-06 5 140432591 140432591 G A PCDHB1 Silent p.G512G 0.45 TCGA-GN-A26A-06 5 140480878 140480878 G A PCDHB3 Silent p.L215L 0.31 TCGA-GN-A26A-06 5 140481400 140481400 C T PCDHB3 Silent p.L389L 0.25 TCGA-GN-A26A-06 5 140536852 140536852 G A PCDHB17 Missense_Mutation p.D426N 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A26A-06 5 140724647 140724647 C T PCDHGA3 Silent p.I349I 0.19 TCGA-GN-A26A-06 5 140745253 140745253 C T PCDHGA5 Silent p.F452F 0.34 TCGA-GN-A26A-06 5 141335230 141335230 G A PCDH12 Silent p.F729F 0.23 TCGA-GN-A26A-06 5 141337426 141337426 C T PCDH12 5'UTR 0.29 TCGA-GN-A26A-06 5 145317664 145317664 C T SH3RF2 Missense_Mutation p.S58F 0.14 deleterious(0) benign(0.005) TCGA-GN-A26A-06 5 150663628 150663628 G A SLC36A3 Silent p.I358I 0.44 TCGA-GN-A26A-06 5 158595967 158595967 G A RNF145 Silent p.I375I 0.22 TCGA-GN-A26A-06 5 172197251 172197251 G A DUSP1 Silent p.P142P 0.29 TCGA-GN-A26A-06 5 35954507 35954507 C T UGT3A1 Missense_Mutation p.G457S 0.23 tolerated(0.16) probably_damaging(0.987) TCGA-GN-A26A-06 5 36995774 36995774 G A NIPBL Missense_Mutation p.E1058K 0.31 deleterious_low_confidence(0.02) benign(0.039) TCGA-GN-A26A-06 5 40854355 40854355 C T CARD6 Missense_Mutation p.S974F 0.12 deleterious(0.05) benign(0.36) TCGA-GN-A26A-06 5 55081648 55081648 C G DDX4 Nonsense_Mutation p.Y271* 0.24 TCGA-GN-A26A-06 5 68590651 68590651 G A CCDC125 Missense_Mutation p.T298I 0.26 deleterious(0) possibly_damaging(0.451) TCGA-GN-A26A-06 5 83360583 83360583 G A EDIL3 Silent p.L296L 0.38 TCGA-GN-A26A-06 6 10935386 10935386 T G SYCP2L Silent p.A593A 0.57 TCGA-GN-A26A-06 6 122767981 122767981 G A SERINC1 Silent p.F388F 0.19 TCGA-GN-A26A-06 6 133844294 133844294 A C EYA4 Missense_Mutation p.I573L 0.36 deleterious(0) probably_damaging(0.98) TCGA-GN-A26A-06 6 28547172 28547172 C T SCAND3 Missense_Mutation p.E149K 0.57 deleterious_low_confidence(0.01) benign(0.007) TCGA-GN-A26A-06 6 32037579 32037579 C T TNXB Missense_Mutation p.E1780K 0.59 probably_damaging(0.986) TCGA-GN-A26A-06 6 33288198 33288198 G A DAXX Missense_Mutation p.H404Y 0.33 tolerated(0.46) benign(0.011) TCGA-GN-A26A-06 6 33288199 33288199 G A DAXX Silent p.S403S 0.33 TCGA-GN-A26A-06 6 36287211 36287211 G A C6orf222 Silent p.N615N 0.61 TCGA-GN-A26A-06 6 39272382 39272382 G A KCNK17 Silent p.I134I 0.55 TCGA-GN-A26A-06 6 41738653 41738653 C T FRS3 Missense_Mutation p.G395S 0.66 tolerated(0.81) benign(0.033) TCGA-GN-A26A-06 6 46800981 46800981 C T MEP1A Missense_Mutation p.R439W 0.53 deleterious(0) probably_damaging(0.993) TCGA-GN-A26A-06 6 74155279 74155279 G A MB21D1 Silent p.I283I 0.39 TCGA-GN-A26A-06 6 97599671 97599671 G A MMS22L Missense_Mutation p.S1153F 0.22 deleterious(0.01) benign(0.347) TCGA-GN-A26A-06 7 100386926 100386926 C T ZAN Silent p.T2437T 0.26 TCGA-GN-A26A-06 7 102108811 102108811 G A LRWD1 Silent p.P302P 0.35 TCGA-GN-A26A-06 7 103126753 103126753 C T RELN Missense_Mutation p.G3292R 0.36 deleterious(0) possibly_damaging(0.616) TCGA-GN-A26A-06 7 105672950 105672950 G A CDHR3 Missense_Mutation p.R822H 0.26 tolerated(0.19) benign(0) TCGA-GN-A26A-06 7 120906769 120906769 C T CPED1 Missense_Mutation p.P847L 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 7 128480207 128480207 G A FLNC Silent p.K514K 0.29 TCGA-GN-A26A-06 7 136700910 136700910 G A CHRM2 Missense_Mutation p.S433N 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-GN-A26A-06 7 141731504 141731504 C T MGAM Missense_Mutation p.P499S 0.32 deleterious(0) probably_damaging(0.996) TCGA-GN-A26A-06 7 141760163 141760163 G A MGAM Missense_Mutation p.S1371N 0.32 tolerated(0.1) benign(0.004) TCGA-GN-A26A-06 7 142104302 142104302 G A TRBV6-9 Nonsense_Mutation p.R55* 0.21 TCGA-GN-A26A-06 7 143087006 143087006 G A ZYX Missense_Mutation p.R517Q 0.27 tolerated(1) benign(0.34) TCGA-GN-A26A-06 7 143792752 143792752 C T OR2A12 Silent p.F184F 0.21 TCGA-GN-A26A-06 7 143793023 143793023 C T OR2A12 Silent p.L275L 0.25 TCGA-GN-A26A-06 7 146997268 146997268 C T CNTNAP2 Missense_Mutation p.R462C 0.47 deleterious(0.01) probably_damaging(0.935) TCGA-GN-A26A-06 7 147092827 147092827 G A CNTNAP2 Missense_Mutation p.G542E 0.23 deleterious(0) probably_damaging(0.978) TCGA-GN-A26A-06 7 150557656 150557656 G A AOC1 Missense_Mutation p.D642N 0.33 tolerated(0.18) benign(0.297) TCGA-GN-A26A-06 7 15652164 15652164 G A MEOX2 Missense_Mutation p.R255W 0.42 deleterious_low_confidence(0) benign(0.398) TCGA-GN-A26A-06 7 158829468 158829468 G A VIPR2 Silent p.F241F 0.29 TCGA-GN-A26A-06 7 27185226 27185226 G A HOXA6 3'UTR 0.18 TCGA-GN-A26A-06 7 40134017 40134017 G A CDK13 Missense_Mutation p.G1326E 0.27 tolerated_low_confidence(0.38) possibly_damaging(0.816) TCGA-GN-A26A-06 7 72657713 72657713 G A GTF2IRD2P1 RNA 0.37 TCGA-GN-A26A-06 7 7278375 7278375 C T C1GALT1 Missense_Mutation p.S237F 0.23 deleterious(0.03) benign(0.081) TCGA-GN-A26A-06 7 73944209 73944209 C T GTF2IRD1 Silent p.I444I 0.43 TCGA-GN-A26A-06 7 82581797 82581797 G A PCLO Silent p.L2824L 0.46 TCGA-GN-A26A-06 7 94991698 94991698 G A PON3 Silent p.N294N 0.34 TCGA-GN-A26A-06 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A26A-06 7 98988584 98988584 C T ARPC1B Missense_Mutation p.P190L 0.30 deleterious(0) possibly_damaging(0.545) TCGA-GN-A26A-06 7 98988585 98988585 C T ARPC1B Silent p.P190P 0.30 TCGA-GN-A26A-06 7 99017104 99017104 T A BUD31 3'UTR 0.35 TCGA-GN-A26A-06 8 100789096 100789096 C T VPS13B Silent p.T2472T 0.21 TCGA-GN-A26A-06 8 106813759 106813759 A T ZFPM2 Silent p.P483P 0.31 TCGA-GN-A26A-06 8 113988232 113988232 C T CSMD3 Silent p.E392E 0.33 TCGA-GN-A26A-06 8 124358477 124358477 C T ATAD2 Missense_Mutation p.R794K 0.21 deleterious(0.03) benign(0.42) TCGA-GN-A26A-06 8 133584655 133584655 C T LRRC6 Missense_Mutation p.E434K 0.15 tolerated(0.1) benign(0.027) TCGA-GN-A26A-06 8 140743318 140743318 C T TRAPPC9 Missense_Mutation p.E1243K 0.32 deleterious(0.02) benign(0.037) TCGA-GN-A26A-06 8 142458032 142458032 C T SNORD5 3'Flank 0.24 TCGA-GN-A26A-06 8 19218823 19218823 C T SH2D4A Missense_Mutation p.S235F 0.25 tolerated(0.05) benign(0.114) TCGA-GN-A26A-06 8 2054304 2054304 C T MYOM2 Missense_Mutation p.P972L 0.14 tolerated(0.3) benign(0.069) TCGA-GN-A26A-06 8 27764740 27764740 G A SCARA5 Missense_Mutation p.P341S 0.30 tolerated(0.21) benign(0.08) TCGA-GN-A26A-06 8 28575288 28575288 G A EXTL3 Missense_Mutation p.G571E 0.36 tolerated(1) benign(0.269) TCGA-GN-A26A-06 8 69633640 69633640 G A C8orf34 Missense_Mutation p.E458K 0.19 tolerated(0.1) benign(0.033) TCGA-GN-A26A-06 8 81599523 81599523 C A ZNF704 Missense_Mutation p.G166C 0.15 deleterious(0) possibly_damaging(0.901) TCGA-GN-A26A-06 8 87679189 87679189 C T CNGB3 Silent p.Q272Q 0.30 TCGA-GN-A26A-06 9 100388231 100388231 A C TSTD2 Missense_Mutation p.F72V 0.14 tolerated(0.43) benign(0.035) TCGA-GN-A26A-06 9 107332290 107332290 C T OR13C8 Missense_Mutation p.S281F 0.49 deleterious(0.02) probably_damaging(0.966) TCGA-GN-A26A-06 9 111956662 111956662 G A EPB41L4B Silent p.L687L 0.43 TCGA-GN-A26A-06 9 130206524 130206524 C T ZNF79 Missense_Mutation p.S182L 0.70 tolerated(0.19) benign(0.001) TCGA-GN-A26A-06 9 131909680 131909680 C T PPP2R4 Silent p.F303F 0.31 TCGA-GN-A26A-06 9 131909681 131909681 C T PPP2R4 Missense_Mutation p.P304S 0.30 deleterious(0.01) probably_damaging(0.944) TCGA-GN-A26A-06 9 134458021 134458021 C T RAPGEF1 Silent p.S993S 0.26 TCGA-GN-A26A-06 9 136307632 136307632 C T ADAMTS13 Missense_Mutation p.P694L 0.50 deleterious(0) possibly_damaging(0.558) TCGA-GN-A26A-06 9 139313549 139313549 C T PMPCA Silent p.T418T 0.48 TCGA-GN-A26A-06 9 139820223 139820223 C T TRAF2 Missense_Mutation p.P459L 0.51 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 9 34637410 34637410 G A SIGMAR1 Silent p.D53D 0.52 TCGA-GN-A26A-06 9 37521707 37521707 G A FBXO10 Nonsense_Mutation p.R687* 0.65 TCGA-GN-A26A-06 9 5185341 5185341 G A INSL6 Missense_Mutation p.P88S 0.23 tolerated(0.42) benign(0.089) TCGA-GN-A26A-06 9 90499936 90499936 G A SPATA31E1 Silent p.G178G 0.30 TCGA-GN-A26A-06 X 100656651 100656651 A C GLA Missense_Mutation p.C172W 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A26A-06 X 102755319 102755319 G A RAB40A Silent p.I122I 0.18 TCGA-GN-A26A-06 X 105011020 105011020 C T IL1RAPL2 Missense_Mutation p.P476L 0.35 deleterious(0) probably_damaging(0.996) TCGA-GN-A26A-06 X 118221776 118221776 G A KIAA1210 Silent p.F1139F 0.37 TCGA-GN-A26A-06 X 118699269 118699269 C A CXorf56 Missense_Mutation p.R17L 0.18 deleterious(0.04) possibly_damaging(0.76) TCGA-GN-A26A-06 X 132161510 132161510 G A USP26 Missense_Mutation p.P247S 0.19 tolerated(0.07) benign(0.039) TCGA-GN-A26A-06 X 135961371 135961371 C G RBMX Intron 0.22 TCGA-GN-A26A-06 X 140993591 140993591 C T MAGEC1 Missense_Mutation p.S134F 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A26A-06 X 140995727 140995727 C T MAGEC1 Missense_Mutation p.S846F 0.26 tolerated_low_confidence(0.2) unknown(0) TCGA-GN-A26A-06 X 145109374 145109374 C T MIR891A RNA 0.18 TCGA-GN-A26A-06 X 147582579 147582579 C T AFF2 5'UTR 0.15 TCGA-GN-A26A-06 X 150348293 150348293 T A GPR50 Missense_Mutation p.Y80N 0.14 deleterious(0) probably_damaging(0.99) TCGA-GN-A26A-06 X 1508348 1508348 G A SLC25A6 Silent p.L128L 0.08 TCGA-GN-A26A-06 X 151123232 151123232 A C GABRE Missense_Mutation p.F488V 0.14 deleterious(0) probably_damaging(0.982) TCGA-GN-A26A-06 X 20212370 20212370 C T RPS6KA3 Silent p.G141G 0.25 TCGA-GN-A26A-06 X 30745606 30745606 C T GK Silent p.L530L 0.33 TCGA-GN-A26A-06 X 47775073 47775073 C T ZNF81 Missense_Mutation p.S343L 0.25 deleterious(0.01) benign(0.241) TCGA-GN-A26A-06 X 48053621 48053621 C T SSX5 Missense_Mutation p.R116Q 0.32 tolerated(0.19) benign(0.03) TCGA-GN-A26A-06 X 48163767 48163767 C T SSX9 RNA 0.27 TCGA-GN-A26A-06 X 49958661 49958661 C T AKAP4 Missense_Mutation p.E235K 0.33 deleterious(0.05) benign(0.252) TCGA-GN-A26A-06 X 51075802 51075802 G A NUDT10 5'UTR 0.12 TCGA-GN-A26A-06 X 51150031 51150031 T C CXorf67 Missense_Mutation p.S55P 0.18 tolerated(0.07) probably_damaging(0.986) TCGA-GN-A26A-06 X 51487452 51487452 G A GSPT2 Missense_Mutation p.E244K 0.21 deleterious(0.02) possibly_damaging(0.461) TCGA-GN-A26A-06 X 54020145 54020145 C T PHF8 Silent p.E541E 0.15 TCGA-GN-A26A-06 X 57162290 57162290 G A SPIN2A Silent p.F247F 0.22 TCGA-GN-A26A-06 X 71887314 71887314 C T PHKA1 Missense_Mutation p.E210K 0.23 deleterious(0) probably_damaging(0.995) TCGA-GN-A26A-06 X 75649911 75649911 C T MAGEE1 Missense_Mutation p.P530S 0.47 tolerated(0.15) benign(0.088) TCGA-GN-A26A-06 X 77112981 77112981 G A MAGT1 Missense_Mutation p.S167L 0.34 deleterious(0.04) probably_damaging(0.993) TCGA-GN-A26A-06 X 91090984 91090984 C T PCDH11X Missense_Mutation p.P161S 0.21 deleterious(0) probably_damaging(0.997) TCGA-GN-A26A-06 X 91133373 91133373 C T PCDH11X Missense_Mutation p.R712C 0.23 deleterious(0.04) probably_damaging(0.932) TCGA-GN-A26C-01 10 102056964 102056964 G A PKD2L1 Silent p.L320L 0.22 TCGA-GN-A26C-01 10 103557835 103557835 G A MGEA5 Missense_Mutation p.S629F 0.13 tolerated(0.1) probably_damaging(0.999) TCGA-GN-A26C-01 10 103899634 103899634 C T PPRC1 Nonsense_Mutation p.R457* 0.15 TCGA-GN-A26C-01 10 103912058 103912058 C T NOLC1 5'UTR 0.18 TCGA-GN-A26C-01 10 104175873 104175873 C T PSD Missense_Mutation p.D220N 0.15 tolerated_low_confidence(0.13) possibly_damaging(0.761) TCGA-GN-A26C-01 10 104235720 104235720 C T TMEM180 Silent p.T511T 0.22 TCGA-GN-A26C-01 10 106125629 106125629 G A CCDC147 Missense_Mutation p.E219K 0.11 deleterious(0) probably_damaging(0.925) TCGA-GN-A26C-01 10 114158669 114158669 G A ACSL5 Missense_Mutation p.R112Q 0.10 deleterious(0.05) probably_damaging(0.964) TCGA-GN-A26C-01 10 115348630 115348630 G A NRAP 3'UTR 0.31 TCGA-GN-A26C-01 10 115372085 115372085 G A NRAP Nonsense_Mutation p.Q1136* 0.17 TCGA-GN-A26C-01 10 115618409 115618409 C T NHLRC2 Missense_Mutation p.H101Y 0.15 deleterious(0.01) possibly_damaging(0.864) TCGA-GN-A26C-01 10 115664714 115664714 C T NHLRC2 Nonsense_Mutation p.Q615* 0.17 TCGA-GN-A26C-01 10 118969466 118969466 G A KCNK18 Missense_Mutation p.E271K 0.26 tolerated(0.33) benign(0.018) TCGA-GN-A26C-01 10 121259585 121259585 C A RGS10 3'UTR 0.20 TCGA-GN-A26C-01 10 121431837 121431837 G A BAG3 Missense_Mutation p.R193K 0.19 deleterious(0.01) possibly_damaging(0.868) TCGA-GN-A26C-01 10 121565915 121565915 C T INPP5F Missense_Mutation p.R455C 0.25 deleterious(0) probably_damaging(0.98) TCGA-GN-A26C-01 10 122348819 122348819 C T PPAPDC1A Silent p.S207S 0.16 TCGA-GN-A26C-01 10 123843518 123843518 G T TACC2 Missense_Mutation p.L501F 0.20 benign(0.013) TCGA-GN-A26C-01 10 123846454 123846454 G A TACC2 Missense_Mutation p.G1480E 0.11 benign(0.26) TCGA-GN-A26C-01 10 124345774 124345774 C T DMBT1 Missense_Mutation p.S553L 0.19 deleterious(0.03) unknown(0) TCGA-GN-A26C-01 10 124390770 124390770 C T DMBT1 Missense_Mutation p.R1978C 0.10 tolerated(0.07) probably_damaging(0.959) TCGA-GN-A26C-01 10 124392396 124392396 C T DMBT1 Silent p.T2000T 0.18 TCGA-GN-A26C-01 10 124457679 124457679 G A C10orf120 Missense_Mutation p.S193L 0.21 tolerated(0.26) benign(0.004) TCGA-GN-A26C-01 10 124596429 124596429 G A CUZD1 Silent p.V245V 0.14 TCGA-GN-A26C-01 10 127697982 127697982 G A FANK1 Missense_Mutation p.R338K 0.15 tolerated_low_confidence(0.87) benign(0.008) TCGA-GN-A26C-01 10 127760159 127760159 C T ADAM12 Missense_Mutation p.G407R 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 10 129854412 129854412 G A PTPRE Missense_Mutation p.G149E 0.16 tolerated(0.22) benign(0.305) TCGA-GN-A26C-01 10 129861350 129861350 C T PTPRE Missense_Mutation p.P210L 0.20 deleterious(0.02) probably_damaging(1) TCGA-GN-A26C-01 10 129871686 129871686 G A PTPRE Nonsense_Mutation p.W517* 0.16 TCGA-GN-A26C-01 10 13333889 13333889 G A PHYH Silent p.F146F 0.12 TCGA-GN-A26C-01 10 134219149 134219149 C T PWWP2B Missense_Mutation p.S382F 0.15 deleterious(0) possibly_damaging(0.653) TCGA-GN-A26C-01 10 13481460 13481460 C T BEND7 Silent p.G373G 0.29 TCGA-GN-A26C-01 10 15107691 15107691 G A OLAH Missense_Mutation p.E224K 0.35 deleterious(0.01) possibly_damaging(0.693) TCGA-GN-A26C-01 10 17113553 17113553 G A CUBN Missense_Mutation p.P833S 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-GN-A26C-01 10 18250624 18250624 G A SLC39A12 Missense_Mutation p.E126K 0.17 tolerated(0.28) benign(0.009) TCGA-GN-A26C-01 10 18270307 18270307 G A SLC39A12 Missense_Mutation p.E331K 0.33 deleterious(0.01) probably_damaging(0.957) TCGA-GN-A26C-01 10 21120484 21120484 T A NEBL Missense_Mutation p.E493V 0.29 deleterious(0.04) probably_damaging(0.915) TCGA-GN-A26C-01 10 23319702 23319702 G A ARMC3 Silent p.K741K 0.14 TCGA-GN-A26C-01 10 24817000 24817000 G A KIAA1217 Missense_Mutation p.G1012S 0.23 tolerated(0.39) benign(0.077) TCGA-GN-A26C-01 10 24873608 24873608 G A ARHGAP21 Silent p.I1870I 0.17 TCGA-GN-A26C-01 10 25887483 25887483 G A GPR158 Missense_Mutation p.M976I 0.16 tolerated(0.11) benign(0.009) TCGA-GN-A26C-01 10 25887976 25887976 G A GPR158 Missense_Mutation p.E1141K 0.24 tolerated(0.76) benign(0.001) TCGA-GN-A26C-01 10 26243928 26243928 G C MYO3A Missense_Mutation p.L98F 0.11 tolerated(0.27) benign(0.305) TCGA-GN-A26C-01 10 26500800 26500800 G A MYO3A Missense_Mutation p.E1587K 0.22 deleterious_low_confidence(0.04) benign(0.003) TCGA-GN-A26C-01 10 26558051 26558051 G A GAD2 Silent p.G308G 0.10 TCGA-GN-A26C-01 10 26792173 26792173 G A APBB1IP Silent p.L167L 0.10 TCGA-GN-A26C-01 10 27539493 27539493 G A RP11-85G18.6 RNA 0.11 TCGA-GN-A26C-01 10 27687498 27687498 C T PTCHD3 Missense_Mutation p.E677K 0.27 deleterious(0.01) benign(0.288) TCGA-GN-A26C-01 10 30615522 30615522 G A MTPAP Missense_Mutation p.P275S 0.25 tolerated(0.5) benign(0.023) TCGA-GN-A26C-01 10 33474637 33474637 C T NRP1 Missense_Mutation p.E784K 0.31 tolerated(0.32) benign(0.036) TCGA-GN-A26C-01 10 34620168 34620168 G A PARD3 Missense_Mutation p.P907S 0.12 deleterious(0.01) possibly_damaging(0.816) TCGA-GN-A26C-01 10 37430756 37430756 G A ANKRD30A Missense_Mutation p.E255K 0.24 tolerated(0.14) possibly_damaging(0.636) TCGA-GN-A26C-01 10 37433934 37433934 C T ANKRD30A Missense_Mutation p.P413S 0.28 tolerated(0.46) possibly_damaging(0.857) TCGA-GN-A26C-01 10 38121341 38121341 G A ZNF248 Silent p.I314I 0.31 TCGA-GN-A26C-01 10 48389378 48389378 C T RBP3 Silent p.E500E 0.17 TCGA-GN-A26C-01 10 4877986 4877986 C T AKR1E2 Silent p.F148F 0.32 TCGA-GN-A26C-01 10 49446147 49446147 G A FRMPD2 Missense_Mutation p.P270S 0.17 tolerated(0.23) probably_damaging(0.919) TCGA-GN-A26C-01 10 5009299 5009299 G A AKR1C1 Intron 0.31 TCGA-GN-A26C-01 10 50531439 50531439 C T C10orf71 Silent p.H283H 0.21 TCGA-GN-A26C-01 10 50854598 50854598 C T CHAT Missense_Mutation p.L387F 0.17 deleterious(0.04) probably_damaging(0.919) TCGA-GN-A26C-01 10 50959894 50959894 G A OGDHL Missense_Mutation p.A243V 0.26 tolerated(0.06) benign(0.091) TCGA-GN-A26C-01 10 5139645 5139645 G A AKR1C3 Missense_Mutation p.R91Q 0.29 tolerated(0.19) benign(0.075) TCGA-GN-A26C-01 10 5149666 5149666 C T AKR1C3 Missense_Mutation p.P315S 0.16 deleterious(0.01) benign(0.215) TCGA-GN-A26C-01 10 52603746 52603746 A C A1CF Splice_Site p.X86_splice 0.15 TCGA-GN-A26C-01 10 54531277 54531277 G A MBL2 Missense_Mutation p.S40F 0.27 tolerated(0.09) probably_damaging(0.924) TCGA-GN-A26C-01 10 55568855 55568855 C T PCDH15 Missense_Mutation p.G586E 0.18 tolerated_low_confidence(0.05) unknown(0) TCGA-GN-A26C-01 10 56138635 56138635 A T PCDH15 Silent p.L75L 0.15 TCGA-GN-A26C-01 10 5948548 5948548 C T FBXO18 Silent p.L287L 0.22 TCGA-GN-A26C-01 10 6002431 6002431 C T IL15RA Missense_Mutation p.G161E 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-GN-A26C-01 10 61112191 61112191 C T FAM13C Missense_Mutation p.V55I 0.20 tolerated_low_confidence(0.23) benign(0.003) TCGA-GN-A26C-01 10 61830130 61830130 G A ANK3 Silent p.F3503F 0.11 TCGA-GN-A26C-01 10 62670703 62670703 G A RHOBTB1 Missense_Mutation p.L80F 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 10 68526055 68526055 C T CTNNA3 Silent p.A416A 0.15 TCGA-GN-A26C-01 10 70044998 70044998 G A PBLD Intron 0.25 TCGA-GN-A26C-01 10 72538199 72538199 A G TBATA Intron 0.16 TCGA-GN-A26C-01 10 7327722 7327722 G A SFMBT2 Intron 0.37 TCGA-GN-A26C-01 10 73553238 73553238 G A CDH23 5'Flank 0.18 TCGA-GN-A26C-01 10 74653521 74653521 G A OIT3 5'UTR 0.32 TCGA-GN-A26C-01 10 74695376 74695376 C T PLA2G12B Silent p.%3D 0.21 TCGA-GN-A26C-01 10 7608174 7608174 C T ITIH5 Silent p.G782G 0.32 TCGA-GN-A26C-01 10 7618721 7618721 C T ITIH5 Missense_Mutation p.G558E 0.19 tolerated(0.17) benign(0.069) TCGA-GN-A26C-01 10 76788998 76788998 G A KAT6B Silent p.E1472E 0.17 TCGA-GN-A26C-01 10 76910467 76910467 G T SAMD8 Missense_Mutation p.V61F 0.20 tolerated(0.32) possibly_damaging(0.492) TCGA-GN-A26C-01 10 76910469 76910469 C T SAMD8 Silent p.V61V 0.21 TCGA-GN-A26C-01 10 7774362 7774362 C T ITIH2 Missense_Mutation p.S570L 0.29 tolerated(0.08) benign(0.009) TCGA-GN-A26C-01 10 79785499 79785499 G A POLR3A Missense_Mutation p.R67C 0.17 tolerated(0.05) benign(0.004) TCGA-GN-A26C-01 10 81049619 81049619 G A ZMIZ1 Nonsense_Mutation p.W171* 0.14 TCGA-GN-A26C-01 10 81049620 81049620 G A ZMIZ1 Missense_Mutation p.G172R 0.14 probably_damaging(1) TCGA-GN-A26C-01 10 81932618 81932618 G A ANXA11 5'UTR 0.16 TCGA-GN-A26C-01 10 82180315 82180315 T G FAM213A Missense_Mutation p.L31R 0.17 deleterious(0.05) probably_damaging(0.986) TCGA-GN-A26C-01 10 82330031 82330031 G A SH2D4B Silent p.E102E 0.20 TCGA-GN-A26C-01 10 87966146 87966146 G A GRID1 Silent p.F165F 0.18 TCGA-GN-A26C-01 10 89624249 89624249 T C PTEN Missense_Mutation p.I8T 0.18 deleterious(0.05) benign(0.007) TCGA-GN-A26C-01 10 90362355 90362355 C T LIPJ Missense_Mutation p.S249L 0.15 deleterious(0.01) benign(0.335) TCGA-GN-A26C-01 10 91371750 91371750 G A PANK1 Silent p.F253F 0.18 TCGA-GN-A26C-01 10 92677504 92677504 G A ANKRD1 Silent p.I179I 0.28 TCGA-GN-A26C-01 10 93038033 93038033 C T PCGF5 Missense_Mutation p.P244L 0.13 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 10 94621 94621 C T TUBB8 Missense_Mutation p.G71S 0.32 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-GN-A26C-01 10 96006226 96006226 G A PLCE1 Missense_Mutation p.D982N 0.16 deleterious(0) possibly_damaging(0.786) TCGA-GN-A26C-01 10 96097619 96097619 G A NOC3L Missense_Mutation p.P702S 0.19 tolerated(0.21) possibly_damaging(0.734) TCGA-GN-A26C-01 10 96291080 96291080 G A TBC1D12 Missense_Mutation p.E708K 0.14 deleterious(0.02) probably_damaging(0.91) TCGA-GN-A26C-01 10 96352063 96352063 T G HELLS Silent p.G615G 0.14 TCGA-GN-A26C-01 10 96580354 96580354 A C CYP2C19 Missense_Mutation p.R307S 0.18 deleterious(0.02) probably_damaging(0.946) TCGA-GN-A26C-01 10 96612670 96612670 G A CYP2C19 Silent p.%3D 0.22 TCGA-GN-A26C-01 10 96709029 96709029 G A CYP2C9 Missense_Mutation p.M269I 0.17 tolerated(1) benign(0.001) TCGA-GN-A26C-01 10 97006972 97006972 C T PDLIM1 Missense_Mutation p.G229R 0.14 deleterious(0) benign(0.356) TCGA-GN-A26C-01 10 97371190 97371190 G A ALDH18A1 Missense_Mutation p.H645Y 0.16 tolerated(1) possibly_damaging(0.536) TCGA-GN-A26C-01 10 97607227 97607227 G A ENTPD1 Missense_Mutation p.D292N 0.20 tolerated(0.1) possibly_damaging(0.75) TCGA-GN-A26C-01 10 98386522 98386522 C T PIK3AP1 Missense_Mutation p.E538K 0.21 tolerated(0.06) possibly_damaging(0.628) TCGA-GN-A26C-01 10 98808855 98808855 A T SLIT1 Missense_Mutation p.F441Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 10 98817007 98817007 G A SLIT1 Missense_Mutation p.P373S 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A26C-01 10 99619278 99619278 G A GOLGA7B Missense_Mutation p.D26N 0.22 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 11 102395720 102395720 C T MMP7 Missense_Mutation p.G187E 0.31 deleterious(0.03) probably_damaging(1) TCGA-GN-A26C-01 11 102575382 102575382 C T MMP27 Missense_Mutation p.G76E 0.23 deleterious(0) probably_damaging(0.98) TCGA-GN-A26C-01 11 102709863 102709863 C T MMP3 Silent p.K349K 0.35 TCGA-GN-A26C-01 11 103780454 103780454 C T PDGFD Missense_Mutation p.D361N 0.36 tolerated(0.13) benign(0.053) TCGA-GN-A26C-01 11 10651091 10651091 G A MRVI1 Missense_Mutation p.P190S 0.38 tolerated(0.05) benign(0.111) TCGA-GN-A26C-01 11 108121761 108121761 C T ATM Silent p.F523F 0.35 TCGA-GN-A26C-01 11 108383740 108383740 C T EXPH5 Missense_Mutation p.E832K 0.35 tolerated(0.12) benign(0.09) TCGA-GN-A26C-01 11 108385124 108385124 G A EXPH5 Silent p.S370S 0.29 TCGA-GN-A26C-01 11 113131041 113131041 C T NCAM1 Silent p.I758I 0.37 TCGA-GN-A26C-01 11 113233138 113233138 C T TTC12 Silent p.L544L 0.35 TCGA-GN-A26C-01 11 113629350 113629350 G A ZW10 Missense_Mutation p.P220L 0.36 tolerated(0.08) benign(0.012) TCGA-GN-A26C-01 11 113860388 113860388 C T HTR3A Missense_Mutation p.S485F 0.32 tolerated(0.36) benign(0.329) TCGA-GN-A26C-01 11 114441812 114441812 G A NXPE4 Nonsense_Mutation p.Q495* 0.39 TCGA-GN-A26C-01 11 116719919 116719919 G A SIK3 Missense_Mutation p.P1140S 0.37 tolerated_low_confidence(0.25) benign(0.011) TCGA-GN-A26C-01 11 117280572 117280572 C T CEP164 Silent p.P1329P 0.27 TCGA-GN-A26C-01 11 119054017 119054017 C T NLRX1 Missense_Mutation p.L933F 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 11 119148881 119148881 A T CBL Missense_Mutation p.Q367H 0.39 deleterious(0) probably_damaging(0.991) TCGA-GN-A26C-01 11 119535808 119535808 G A PVRL1 Silent p.S401S 0.33 TCGA-GN-A26C-01 11 123810527 123810527 C T OR4D5 Silent p.F68F 0.36 TCGA-GN-A26C-01 11 123894524 123894524 G A OR10G9 Missense_Mutation p.G269R 0.30 tolerated(0.19) benign(0.03) TCGA-GN-A26C-01 11 123901097 123901097 C T OR10G8 Silent p.F256F 0.30 TCGA-GN-A26C-01 11 123901117 123901117 C T OR10G8 Missense_Mutation p.S263F 0.36 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 11 124007856 124007856 C T VWA5A Missense_Mutation p.A587V 0.35 deleterious(0) possibly_damaging(0.887) TCGA-GN-A26C-01 11 124189289 124189289 C T OR8D2 Missense_Mutation p.E269K 0.29 tolerated(0.09) possibly_damaging(0.492) TCGA-GN-A26C-01 11 124767049 124767049 G A ROBO4 Missense_Mutation p.P60L 0.40 deleterious(0.02) benign(0.333) TCGA-GN-A26C-01 11 128354817 128354817 G A ETS1 Nonsense_Mutation p.R255* 0.45 TCGA-GN-A26C-01 11 128354818 128354818 G A ETS1 Silent p.L254L 0.46 TCGA-GN-A26C-01 11 128709328 128709328 C T KCNJ1 Missense_Mutation p.D290N 0.14 tolerated(0.05) possibly_damaging(0.474) TCGA-GN-A26C-01 11 128848675 128848675 C T ARHGAP32 Missense_Mutation p.M690I 0.37 tolerated(0.61) benign(0) TCGA-GN-A26C-01 11 129752435 129752435 C T NFRKB Silent p.E356E 0.40 TCGA-GN-A26C-01 11 129780471 129780471 G A PRDM10 Silent p.S1025S 0.43 TCGA-GN-A26C-01 11 132016308 132016308 C T NTM Silent p.I100I 0.29 TCGA-GN-A26C-01 11 1651372 1651372 C T KRTAP5-5 Missense_Mutation p.S101F 0.17 unknown(0) TCGA-GN-A26C-01 11 17408460 17408460 C T KCNJ11 3'UTR 0.31 TCGA-GN-A26C-01 11 17531101 17531101 G A USH1C Silent p.I605I 0.52 TCGA-GN-A26C-01 11 18047205 18047205 C T TPH1 Missense_Mutation p.E283K 0.31 deleterious(0) possibly_damaging(0.735) TCGA-GN-A26C-01 11 18047216 18047216 G A TPH1 Missense_Mutation p.P279L 0.33 deleterious(0) probably_damaging(0.969) TCGA-GN-A26C-01 11 18062263 18062263 C T TPH1 Missense_Mutation p.G16E 0.16 tolerated(0.06) benign(0.323) TCGA-GN-A26C-01 11 18195625 18195625 C T MRGPRX4 Silent p.F274F 0.24 TCGA-GN-A26C-01 11 1862390 1862390 G A TNNI2 Missense_Mutation p.D136N 0.24 deleterious(0.03) benign(0.421) TCGA-GN-A26C-01 11 18730994 18730994 C T IGSF22 Missense_Mutation p.E980K 0.36 deleterious(0.01) possibly_damaging(0.682) TCGA-GN-A26C-01 11 19206514 19206514 C T CSRP3 Missense_Mutation p.E165K 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-GN-A26C-01 11 19251050 19251050 G A E2F8 Missense_Mutation p.S615F 0.32 tolerated(0.18) benign(0.005) TCGA-GN-A26C-01 11 20129252 20129252 C T NAV2 Missense_Mutation p.S2354L 0.12 tolerated(0.08) probably_damaging(0.98) TCGA-GN-A26C-01 11 21594829 21594829 C T NELL1 Silent p.D752D 0.39 TCGA-GN-A26C-01 11 2549237 2549237 C T KCNQ1 Missense_Mutation p.L156F 0.16 deleterious(0) probably_damaging(0.987) TCGA-GN-A26C-01 11 26587086 26587086 G A MUC15 Missense_Mutation p.S134F 0.24 deleterious_low_confidence(0.04) probably_damaging(0.919) TCGA-GN-A26C-01 11 26646015 26646015 G A ANO3 Missense_Mutation p.E615K 0.23 deleterious(0.05) probably_damaging(0.95) TCGA-GN-A26C-01 11 27680049 27680049 C T BDNF Missense_Mutation p.M103I 0.16 tolerated(0.08) possibly_damaging(0.584) TCGA-GN-A26C-01 11 27680087 27680087 C T BDNF Missense_Mutation p.V91I 0.27 tolerated(0.72) possibly_damaging(0.621) TCGA-GN-A26C-01 11 2905985 2905985 C T CDKN1C Silent p.G245G 0.14 TCGA-GN-A26C-01 11 293665 293665 C T ATHL1 Missense_Mutation p.R518C 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 11 2981045 2981045 G C NAP1L4 Missense_Mutation p.A234G 0.07 tolerated(0.22) benign(0.015) TCGA-GN-A26C-01 11 3028115 3028115 G A CARS Missense_Mutation p.H715Y 0.14 deleterious(0.01) benign(0.212) TCGA-GN-A26C-01 11 32410594 32410594 G A WT1 3'UTR 0.16 TCGA-GN-A26C-01 11 32460585 32460585 C T WT1 5'Flank 0.12 TCGA-GN-A26C-01 11 33361066 33361066 C T HIPK3 Silent p.F533F 0.13 TCGA-GN-A26C-01 11 3380851 3380851 C T ZNF195 Missense_Mutation p.E463K 0.15 deleterious(0.04) probably_damaging(0.966) TCGA-GN-A26C-01 11 3430139 3430139 C T TSSC2 RNA 0.35 TCGA-GN-A26C-01 11 34477732 34477732 C T CAT Missense_Mutation p.P296S 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 11 34501684 34501684 T G ELF5 3'UTR 0.28 TCGA-GN-A26C-01 11 35457602 35457602 A G PAMR1 Silent p.L411L 0.13 TCGA-GN-A26C-01 11 3700811 3700811 G A NUP98 Silent p.V1682V 0.12 TCGA-GN-A26C-01 11 403636 403636 C T PKP3 Missense_Mutation p.R648C 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-GN-A26C-01 11 44104794 44104794 T C ACCS Missense_Mutation p.L396P 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 11 44130795 44130795 C T EXT2 Silent p.P229P 0.24 TCGA-GN-A26C-01 11 44931278 44931278 C T TSPAN18 Missense_Mutation p.A29V 0.31 deleterious(0.01) benign(0.115) TCGA-GN-A26C-01 11 46529781 46529781 G A AMBRA1 Missense_Mutation p.P677S 0.11 tolerated_low_confidence(0.2) probably_damaging(0.999) TCGA-GN-A26C-01 11 47611798 47611798 C T C1QTNF4 Missense_Mutation p.G189S 0.38 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 11 4790629 4790629 C T OR51F1 Missense_Mutation p.M173I 0.14 tolerated(0.11) benign(0.004) TCGA-GN-A26C-01 11 48239282 48239282 G A OR4B1 Silent p.G307G 0.40 TCGA-GN-A26C-01 11 4869488 4869488 C T OR51S1 Silent p.R317R 0.14 TCGA-GN-A26C-01 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.15 tolerated(0.09) benign(0.141) TCGA-GN-A26C-01 11 4870287 4870287 C T OR51S1 Missense_Mutation p.G51D 0.17 tolerated(0.21) possibly_damaging(0.883) TCGA-GN-A26C-01 11 49831525 49831525 G A RP11-707M1.1 RNA 0.29 TCGA-GN-A26C-01 11 50004008 50004008 G A OR4C12 Silent p.F10F 0.22 TCGA-GN-A26C-01 11 51515514 51515514 A G OR4C46 Missense_Mutation p.N78S 0.37 deleterious_low_confidence(0) benign(0.01) TCGA-GN-A26C-01 11 5289674 5289674 G A HBE1 3'UTR 0.22 TCGA-GN-A26C-01 11 5411009 5411009 C T OR51M1 Silent p.L127L 0.12 TCGA-GN-A26C-01 11 56058353 56058353 G A OR8H1 Silent p.F62F 0.34 TCGA-GN-A26C-01 11 56114225 56114225 G A OR8K1 Silent p.R237R 0.38 TCGA-GN-A26C-01 11 5626765 5626765 C T TRIM6 Nonsense_Mutation p.R268* 0.33 TCGA-GN-A26C-01 11 56949817 56949817 C T LRRC55 Silent p.G150G 0.42 TCGA-GN-A26C-01 11 5758004 5758004 C T OR56B1 Silent p.I86I 0.13 TCGA-GN-A26C-01 11 57798862 57798862 C T OR6Q1 Silent p.I146I 0.32 TCGA-GN-A26C-01 11 57799099 57799099 C T OR6Q1 Silent p.I225I 0.37 TCGA-GN-A26C-01 11 57995623 57995623 G A OR10Q1 Missense_Mutation p.A242V 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 11 58294862 58294862 C A LPXN 3'UTR 0.41 TCGA-GN-A26C-01 11 58294863 58294863 C T LPXN 3'UTR 0.40 TCGA-GN-A26C-01 11 58478127 58478127 C T GLYAT Missense_Mutation p.E142K 0.35 tolerated(1) benign(0.001) TCGA-GN-A26C-01 11 58604599 58604599 G A GLYATL2 Missense_Mutation p.S122L 0.23 tolerated(0.13) benign(0.005) TCGA-GN-A26C-01 11 59211305 59211305 G A OR5A1 Missense_Mutation p.G222S 0.38 tolerated(0.45) benign(0.044) TCGA-GN-A26C-01 11 59423975 59423975 G A PATL1 Silent p.V240V 0.31 TCGA-GN-A26C-01 11 5968724 5968724 C T OR56A3 Silent p.L50L 0.18 TCGA-GN-A26C-01 11 5968725 5968725 T A OR56A3 Missense_Mutation p.L50Q 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 11 59942994 59942994 G A MS4A6A Missense_Mutation p.P172S 0.24 tolerated(0.32) benign(0.165) TCGA-GN-A26C-01 11 60703336 60703336 G A TMEM132A Missense_Mutation p.E678K 0.37 deleterious(0) probably_damaging(0.939) TCGA-GN-A26C-01 11 6129845 6129845 C T OR56B4 Silent p.F279F 0.20 TCGA-GN-A26C-01 11 61490429 61490429 C T DAGLA Missense_Mutation p.L136F 0.53 deleterious(0.05) probably_damaging(0.995) TCGA-GN-A26C-01 11 61504722 61504722 C T DAGLA Silent p.I480I 0.30 TCGA-GN-A26C-01 11 61607868 61607868 G A FADS2 Silent p.K127K 0.43 TCGA-GN-A26C-01 11 61665766 61665766 A T RAB3IL1 Missense_Mutation p.F378Y 0.30 tolerated(0.68) benign(0.016) TCGA-GN-A26C-01 11 61977904 61977904 G A SCGB2A1 Silent p.L25L 0.34 TCGA-GN-A26C-01 11 62010858 62010858 C T SCGB1D2 Silent p.A51A 0.37 TCGA-GN-A26C-01 11 6226882 6226882 G A C11orf42 Missense_Mutation p.E13K 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A26C-01 11 62592967 62592967 G A STX5 Silent p.F156F 0.34 TCGA-GN-A26C-01 11 62678033 62678033 G A CHRM1 Silent p.I180I 0.24 TCGA-GN-A26C-01 11 64055847 64055847 C T GPR137 Silent p.Y331Y 0.40 TCGA-GN-A26C-01 11 64055848 64055848 C T GPR137 Silent p.L332L 0.40 TCGA-GN-A26C-01 11 64397988 64397988 C T NRXN2 Missense_Mutation p.E1215K 0.35 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 11 64521746 64521746 C T PYGM Silent p.L357L 0.25 TCGA-GN-A26C-01 11 64575105 64575105 C T MEN1 Missense_Mutation p.M239I 0.35 deleterious(0.01) possibly_damaging(0.511) TCGA-GN-A26C-01 11 66192547 66192547 G A NPAS4 Missense_Mutation p.G729E 0.32 tolerated(0.21) benign(0.039) TCGA-GN-A26C-01 11 66192568 66192568 C T NPAS4 Missense_Mutation p.P736L 0.33 deleterious(0.04) probably_damaging(0.915) TCGA-GN-A26C-01 11 67219581 67219581 G A GPR152 Silent p.F205F 0.49 TCGA-GN-A26C-01 11 67413180 67413180 G A ACY3 Silent p.L139L 0.32 TCGA-GN-A26C-01 11 6953603 6953603 G A ZNF215 Missense_Mutation p.E34K 0.30 tolerated(0.14) probably_damaging(0.994) TCGA-GN-A26C-01 11 6977820 6977820 G A ZNF215 3'UTR 0.40 TCGA-GN-A26C-01 11 7070992 7070992 G A NLRP14 Silent p.G738G 0.32 TCGA-GN-A26C-01 11 710470 710470 C T EPS8L2 Missense_Mutation p.S50L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 11 71276920 71276920 C T KRTAP5-10 Missense_Mutation p.S96F 0.19 unknown(0) TCGA-GN-A26C-01 11 71906446 71906446 C T FOLR1 Silent p.F100F 0.36 TCGA-GN-A26C-01 11 72004407 72004407 G A CLPB 3'UTR 0.33 TCGA-GN-A26C-01 11 76370928 76370928 C T LRRC32 Missense_Mutation p.G570E 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-GN-A26C-01 11 7654153 7654153 C T PPFIBP2 Missense_Mutation p.S375L 0.14 tolerated(0.16) benign(0.14) TCGA-GN-A26C-01 11 76823641 76823641 C T CAPN5 Missense_Mutation p.P102S 0.25 deleterious(0.04) probably_damaging(0.965) TCGA-GN-A26C-01 11 76825396 76825396 C T CAPN5 Silent p.A205A 0.33 TCGA-GN-A26C-01 11 76922920 76922920 C T MYO7A Silent p.L2098L 0.37 TCGA-GN-A26C-01 11 77412531 77412531 G A RSF1 Silent p.I581I 0.30 TCGA-GN-A26C-01 11 78372622 78372622 G A TENM4 Silent p.L2475L 0.38 TCGA-GN-A26C-01 11 78381204 78381204 G A TENM4 Silent p.P2062P 0.23 TCGA-GN-A26C-01 11 7847163 7847163 G A OR5P3 Silent p.A119A 0.24 TCGA-GN-A26C-01 11 8132361 8132361 C T RIC3 Missense_Mutation p.E332K 0.27 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-GN-A26C-01 11 823736 823736 C T PNPLA2 Missense_Mutation p.A267V 0.22 tolerated(0.21) benign(0.003) TCGA-GN-A26C-01 11 82924182 82924182 C T ANKRD42 Intron 0.29 TCGA-GN-A26C-01 11 85397055 85397055 T A CCDC89 Missense_Mutation p.K40M 0.44 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 11 85406145 85406145 G A SYTL2 3'UTR 0.26 TCGA-GN-A26C-01 11 85593684 85593684 G A CCDC83 Nonsense_Mutation p.W103* 0.40 TCGA-GN-A26C-01 11 902221 902221 G A CHID1 Missense_Mutation p.T149M 0.17 deleterious(0.01) benign(0.408) TCGA-GN-A26C-01 11 92085335 92085335 C T FAT3 Silent p.I19I 0.29 TCGA-GN-A26C-01 11 92087329 92087329 G A FAT3 Missense_Mutation p.R684K 0.31 benign(0.004) TCGA-GN-A26C-01 11 92088399 92088399 C T FAT3 Missense_Mutation p.P1041S 0.36 probably_damaging(0.999) TCGA-GN-A26C-01 11 92577351 92577351 C T FAT3 Silent p.I3606I 0.40 TCGA-GN-A26C-01 11 92918857 92918857 G A SLC36A4 Missense_Mutation p.S60L 0.38 deleterious(0.01) possibly_damaging(0.71) TCGA-GN-A26C-01 11 94197315 94197315 G A MRE11A Missense_Mutation p.H397Y 0.30 tolerated(0.3) possibly_damaging(0.551) TCGA-GN-A26C-01 12 101295594 101295594 G A ANO4 Missense_Mutation p.G11R 0.29 deleterious_low_confidence(0.01) benign(0.025) TCGA-GN-A26C-01 12 102025377 102025377 C A MYBPC1 Silent p.V81V 0.42 TCGA-GN-A26C-01 12 102040583 102040583 C T MYBPC1 Silent p.I311I 0.46 TCGA-GN-A26C-01 12 102071169 102071169 G A MYBPC1 Missense_Mutation p.D1029N 0.42 tolerated(0.36) benign(0.287) TCGA-GN-A26C-01 12 106500239 106500239 C T NUAK1 Missense_Mutation p.R102Q 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 12 10775235 10775235 A C STYK1 Splice_Site p.X323_splice 0.36 TCGA-GN-A26C-01 12 108008871 108008871 C T BTBD11 Missense_Mutation p.H645Y 0.42 tolerated(0.21) benign(0.115) TCGA-GN-A26C-01 12 109604784 109604784 C T ACACB Missense_Mutation p.R258W 0.33 tolerated(0.11) possibly_damaging(0.587) TCGA-GN-A26C-01 12 109928893 109928893 C T UBE3B Missense_Mutation p.S225F 0.38 deleterious(0.01) possibly_damaging(0.553) TCGA-GN-A26C-01 12 110457005 110457005 C T ANKRD13A Silent p.F202F 0.43 TCGA-GN-A26C-01 12 111652091 111652091 G A CUX2 Missense_Mutation p.E51K 0.33 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 12 112924331 112924331 A T PTPN11 Missense_Mutation p.H426L 0.26 deleterious(0) probably_damaging(0.931) TCGA-GN-A26C-01 12 113307695 113307695 C T RPH3A Intron 0.35 TCGA-GN-A26C-01 12 117217114 117217114 C T RNFT2 Silent p.I281I 0.38 TCGA-GN-A26C-01 12 120594775 120594775 G A GCN1L1 Missense_Mutation p.R1037C 0.38 probably_damaging(0.998) TCGA-GN-A26C-01 12 122091164 122091164 C T MORN3 Silent p.K155K 0.37 TCGA-GN-A26C-01 12 122964820 122964820 G A ZCCHC8 Nonsense_Mutation p.Q353* 0.31 TCGA-GN-A26C-01 12 122964821 122964821 T A ZCCHC8 Missense_Mutation p.Q352H 0.27 tolerated(0.31) benign(0.001) TCGA-GN-A26C-01 12 123214229 123214229 G A HCAR1 Missense_Mutation p.R220W 0.25 tolerated(0.13) benign(0.147) TCGA-GN-A26C-01 12 123214230 123214230 G A HCAR1 Silent p.T219T 0.25 TCGA-GN-A26C-01 12 123463717 123463717 C T OGFOD2 Missense_Mutation p.R233W 0.38 deleterious(0.02) possibly_damaging(0.764) TCGA-GN-A26C-01 12 123907693 123907693 G A RILPL2 Missense_Mutation p.P168L 0.24 deleterious(0) possibly_damaging(0.791) TCGA-GN-A26C-01 12 124345695 124345695 C T DNAH10 Missense_Mutation p.P2178S 0.29 possibly_damaging(0.787) TCGA-GN-A26C-01 12 12483765 12483765 G A MANSC1 Silent p.T164T 0.30 TCGA-GN-A26C-01 12 126068489 126068489 C T TMEM132B Silent p.V457V 0.32 TCGA-GN-A26C-01 12 126135239 126135239 G A TMEM132B Missense_Mutation p.E547K 0.35 deleterious(0.01) benign(0.281) TCGA-GN-A26C-01 12 13224237 13224237 G T KIAA1467 Missense_Mutation p.M477I 0.33 tolerated(0.09) benign(0.03) TCGA-GN-A26C-01 12 132445388 132445388 C T EP400 Missense_Mutation p.T75I 0.40 unknown(0) TCGA-GN-A26C-01 12 18836136 18836136 G A PLCZ1 3'UTR 0.64 TCGA-GN-A26C-01 12 18872434 18872434 G A PLCZ1 Missense_Mutation p.S167L 0.36 deleterious(0) probably_damaging(0.978) TCGA-GN-A26C-01 12 18876287 18876287 T A PLCZ1 Missense_Mutation p.I109F 0.31 tolerated(0.71) benign(0.014) TCGA-GN-A26C-01 12 20790115 20790115 C T PDE3A Missense_Mutation p.P695S 0.35 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A26C-01 12 21757457 21757457 G A GYS2 Missense_Mutation p.P24S 0.23 tolerated(0.39) probably_damaging(0.998) TCGA-GN-A26C-01 12 22047080 22047080 C T ABCC9 Missense_Mutation p.G563E 0.40 tolerated(1) benign(0.001) TCGA-GN-A26C-01 12 2622102 2622102 G A CACNA1C Missense_Mutation p.D448N 0.36 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 12 27070630 27070630 G A ASUN Missense_Mutation p.S309L 0.37 tolerated(0.67) benign(0.001) TCGA-GN-A26C-01 12 2933279 2933279 C T ITFG2 Missense_Mutation p.R422C 0.42 tolerated(0.06) benign(0.003) TCGA-GN-A26C-01 12 32137514 32137514 C T KIAA1551 Missense_Mutation p.P1209S 0.45 tolerated(0.17) benign(0.023) TCGA-GN-A26C-01 12 32137515 32137515 C T KIAA1551 Missense_Mutation p.P1209L 0.48 tolerated(0.19) benign(0.17) TCGA-GN-A26C-01 12 33559843 33559843 C T SYT10 Missense_Mutation p.D320N 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 12 33560282 33560282 G A SYT10 Silent p.S173S 0.30 TCGA-GN-A26C-01 12 33560283 33560283 G A SYT10 Missense_Mutation p.S173F 0.30 deleterious(0) probably_damaging(0.993) TCGA-GN-A26C-01 12 40012889 40012889 T C ABCD2 Missense_Mutation p.T177A 0.28 deleterious(0.01) benign(0.3) TCGA-GN-A26C-01 12 42863329 42863329 G A PRICKLE1 Nonsense_Mutation p.Q103* 0.37 TCGA-GN-A26C-01 12 46244517 46244517 C T ARID2 Nonsense_Mutation p.Q871* 0.34 TCGA-GN-A26C-01 12 47160478 47160478 C T SLC38A4 3'UTR 0.29 TCGA-GN-A26C-01 12 47182344 47182344 C T SLC38A4 Silent p.G59G 0.23 TCGA-GN-A26C-01 12 48374406 48374406 T A COL2A1 Silent p.G852G 0.20 TCGA-GN-A26C-01 12 4919931 4919931 G A KCNA6 Missense_Mutation p.E242K 0.29 tolerated(0.87) benign(0.005) TCGA-GN-A26C-01 12 49436573 49436573 G A KMT2D Silent p.T1911T 0.39 TCGA-GN-A26C-01 12 5021025 5021025 G A KCNA1 Missense_Mutation p.E161K 0.30 deleterious(0) probably_damaging(0.988) TCGA-GN-A26C-01 12 50453566 50453566 G A ASIC1 Missense_Mutation p.M129I 0.48 tolerated(0.33) benign(0.007) TCGA-GN-A26C-01 12 52100395 52100395 G A SCN8A Missense_Mutation p.D511N 0.30 tolerated(0.19) probably_damaging(0.964) TCGA-GN-A26C-01 12 52642480 52642480 C T KRT7 Missense_Mutation p.P449L 0.47 deleterious_low_confidence(0) benign(0.012) TCGA-GN-A26C-01 12 52649936 52649936 G A KRT121P RNA 0.32 TCGA-GN-A26C-01 12 52886760 52886760 G A KRT6A Silent p.S71S 0.44 TCGA-GN-A26C-01 12 52913627 52913627 G A KRT5 Missense_Mutation p.P152S 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 12 52914052 52914052 C T KRT5 Missense_Mutation p.R10Q 0.38 tolerated(1) unknown(0) TCGA-GN-A26C-01 12 53044244 53044244 G A KRT2 Missense_Mutation p.P227S 0.36 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 12 55846846 55846846 G A OR6C2 Silent p.L283L 0.31 TCGA-GN-A26C-01 12 55945146 55945146 C T OR6C4 Missense_Mutation p.L46F 0.35 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GN-A26C-01 12 56214290 56214290 G A ORMDL2 3'UTR 0.25 TCGA-GN-A26C-01 12 57345766 57345766 C T RDH16 3'UTR 0.50 TCGA-GN-A26C-01 12 57435264 57435264 C T MYO1A Silent p.K372K 0.33 TCGA-GN-A26C-01 12 57592276 57592276 C T LRP1 Missense_Mutation p.H3167Y 0.26 possibly_damaging(0.483) TCGA-GN-A26C-01 12 58016861 58016861 C T SLC26A10 Missense_Mutation p.P332S 0.39 deleterious(0.01) benign(0.364) TCGA-GN-A26C-01 12 58162854 58162854 G A METTL1 Silent p.F252F 0.27 TCGA-GN-A26C-01 12 58168519 58168519 C T METTL21B Intron 0.54 TCGA-GN-A26C-01 12 6426513 6426513 G A PLEKHG6 Silent p.V267V 0.25 TCGA-GN-A26C-01 12 66345245 66345245 A T HMGA2 Intron 0.38 TCGA-GN-A26C-01 12 68646579 68646579 G A IL22 Missense_Mutation p.R73C 0.35 deleterious(0.03) probably_damaging(0.97) TCGA-GN-A26C-01 12 70066703 70066703 C T BEST3 Missense_Mutation p.D304N 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 12 71960479 71960479 C T LGR5 Silent p.L333L 0.36 TCGA-GN-A26C-01 12 71978555 71978555 G A LGR5 3'UTR 0.42 TCGA-GN-A26C-01 12 72338106 72338106 C T TPH2 Silent p.S96S 0.22 TCGA-GN-A26C-01 12 72969126 72969126 G A TRHDE Silent p.R696R 0.31 TCGA-GN-A26C-01 12 73046870 73046870 G A TRHDE Missense_Mutation p.R928Q 0.38 tolerated(0.09) benign(0.32) TCGA-GN-A26C-01 12 7457123 7457123 G A ACSM4 Missense_Mutation p.E66K 0.32 deleterious(0) possibly_damaging(0.687) TCGA-GN-A26C-01 12 7522042 7522042 C T CD163L1 Missense_Mutation p.G1317E 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 12 7635987 7635987 C T CD163 Missense_Mutation p.E1022K 0.29 deleterious(0.01) probably_damaging(0.947) TCGA-GN-A26C-01 12 7803668 7803668 G A APOBEC1 Missense_Mutation p.P171L 0.40 tolerated(0.69) benign(0.2) TCGA-GN-A26C-01 12 78444771 78444771 G A NAV3 Missense_Mutation p.R787Q 0.41 tolerated(0.11) probably_damaging(0.937) TCGA-GN-A26C-01 12 78583938 78583938 C T NAV3 Missense_Mutation p.S2055F 0.41 deleterious(0) benign(0.361) TCGA-GN-A26C-01 12 81112737 81112737 G C MYF5 Missense_Mutation p.Q225H 0.42 tolerated(0.15) possibly_damaging(0.467) TCGA-GN-A26C-01 12 8212126 8212126 T A C3AR1 Missense_Mutation p.N219I 0.34 deleterious(0.05) benign(0.298) TCGA-GN-A26C-01 12 86373394 86373394 C T MGAT4C Silent p.G370G 0.53 TCGA-GN-A26C-01 12 86383208 86383208 C T MGAT4C Missense_Mutation p.M39I 0.27 tolerated(0.67) benign(0.001) TCGA-GN-A26C-01 12 89917128 89917128 G A GALNT4 Missense_Mutation p.P400L 0.34 tolerated(0.39) benign(0.038) TCGA-GN-A26C-01 12 91502681 91502681 G A LUM Missense_Mutation p.P26S 0.32 tolerated(0.28) benign(0.001) TCGA-GN-A26C-01 12 94673258 94673258 T - PLXNC1 Frame_Shift_Del p.V1203Afs*40 0.26 TCGA-GN-A26C-01 12 98849586 98849586 G A SLC9A7P1 RNA 0.22 TCGA-GN-A26C-01 12 99020400 99020400 G A IKBIP Missense_Mutation p.L148F 0.27 deleterious(0.01) possibly_damaging(0.809) TCGA-GN-A26C-01 12 99020401 99020401 G A IKBIP Silent p.S147S 0.26 TCGA-GN-A26C-01 13 101712167 101712167 T A NALCN Intron 0.22 TCGA-GN-A26C-01 13 103701670 103701670 G A SLC10A2 Silent p.F296F 0.18 TCGA-GN-A26C-01 13 113086823 113086823 G A SPACA7 Missense_Mutation p.G171R 0.23 deleterious(0) probably_damaging(0.991) TCGA-GN-A26C-01 13 113086824 113086824 G A SPACA7 Missense_Mutation p.G171E 0.22 tolerated(0.06) probably_damaging(0.988) TCGA-GN-A26C-01 13 113772738 113772738 C T F7 Missense_Mutation p.L273F 0.20 tolerated(0.18) benign(0.053) TCGA-GN-A26C-01 13 113899533 113899533 C T CUL4A Silent p.I504I 0.18 TCGA-GN-A26C-01 13 20048070 20048070 G A TPTE2 Nonsense_Mutation p.R126* 0.17 TCGA-GN-A26C-01 13 24895914 24895914 G A C1QTNF9 3'UTR 0.21 TCGA-GN-A26C-01 13 26154085 26154085 G A ATP8A2 Silent p.K669K 0.45 TCGA-GN-A26C-01 13 27847274 27847274 C T RASL11A Silent p.I124I 0.12 TCGA-GN-A26C-01 13 33704280 33704280 C T STARD13 Silent p.R178R 0.31 TCGA-GN-A26C-01 13 36026256 36026256 A C NBEA Missense_Mutation p.K2111T 0.19 deleterious(0.02) possibly_damaging(0.799) TCGA-GN-A26C-01 13 36700082 36700082 C T DCLK1 Missense_Mutation p.G65R 0.16 deleterious(0) unknown(0) TCGA-GN-A26C-01 13 37011908 37011908 G A CCNA1 Missense_Mutation p.R147K 0.20 tolerated(0.6) benign(0.001) TCGA-GN-A26C-01 13 37014135 37014135 C T CCNA1 Missense_Mutation p.P305S 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 13 37679102 37679102 C T CSNK1A1L Missense_Mutation p.E98K 0.23 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-GN-A26C-01 13 38320295 38320295 C T TRPC4 Missense_Mutation p.E226K 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 13 39263937 39263937 C T FREM2 Missense_Mutation p.T819I 0.15 tolerated(0.06) benign(0.118) TCGA-GN-A26C-01 13 39564817 39564817 C T STOML3 Silent p.E14E 0.20 TCGA-GN-A26C-01 13 51854663 51854663 T - FAM124A Frame_Shift_Del p.L341Cfs*102 0.14 TCGA-GN-A26C-01 13 53035666 53035666 G A CKAP2 Missense_Mutation p.M236I 0.20 tolerated(0.58) benign(0.001) TCGA-GN-A26C-01 13 61986510 61986510 C T PCDH20 Silent p.L574L 0.15 TCGA-GN-A26C-01 13 70275873 70275873 C T KLHL1 Silent p.G736G 0.15 TCGA-GN-A26C-01 13 70681351 70681351 C T KLHL1 Missense_Mutation p.E161K 0.15 tolerated_low_confidence(0.16) benign(0.001) TCGA-GN-A26C-01 13 72053377 72053377 C T DACH1 Silent p.L600L 0.26 TCGA-GN-A26C-01 13 77575109 77575109 C T CLN5 3'UTR 0.15 TCGA-GN-A26C-01 13 79940279 79940279 G A RBM26 Missense_Mutation p.P396L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 13 99361897 99361897 C T SLC15A1 Silent p.L332L 0.17 TCGA-GN-A26C-01 13 99362121 99362121 G A SLC15A1 Silent p.I315I 0.23 TCGA-GN-A26C-01 13 99537329 99537329 G A DOCK9 Missense_Mutation p.P760S 0.22 deleterious(0.04) possibly_damaging(0.783) TCGA-GN-A26C-01 14 100402664 100402664 C T EML1 Silent p.I715I 0.30 TCGA-GN-A26C-01 14 101447342 101447342 G A SNORD114-20 RNA 0.15 TCGA-GN-A26C-01 14 101488435 101488435 G A MIR379 RNA 0.31 TCGA-GN-A26C-01 14 102028428 102028428 G A DIO3 Missense_Mutation p.E199K 0.15 tolerated(0.11) possibly_damaging(0.743) TCGA-GN-A26C-01 14 102471549 102471549 C T DYNC1H1 Silent p.L1803L 0.17 TCGA-GN-A26C-01 14 102474652 102474652 T A DYNC1H1 Missense_Mutation p.H1985Q 0.21 benign(0.002) TCGA-GN-A26C-01 14 102474655 102474655 C T DYNC1H1 Silent p.S1986S 0.20 TCGA-GN-A26C-01 14 104470649 104470649 G A TDRD9 Missense_Mutation p.D520N 0.24 tolerated(0.15) benign(0.005) TCGA-GN-A26C-01 14 104641894 104641894 G A KIF26A Silent p.Q923Q 0.14 TCGA-GN-A26C-01 14 105174857 105174857 C T INF2 Missense_Mutation p.S607F 0.29 deleterious(0) unknown(0) TCGA-GN-A26C-01 14 105406373 105406373 C T AHNAK2 Missense_Mutation p.G5139R 0.18 benign(0.027) TCGA-GN-A26C-01 14 105412315 105412315 G A AHNAK2 Missense_Mutation p.P3158L 0.36 benign(0.106) TCGA-GN-A26C-01 14 105412316 105412316 G A AHNAK2 Missense_Mutation p.P3158S 0.35 benign(0.222) TCGA-GN-A26C-01 14 105716688 105716690 CTC TA BTBD6 Frame_Shift_Del p.S380Mfs*8 0.16 TCGA-GN-A26C-01 14 106494266 106494266 C T IGHV2-5 Missense_Mutation p.D76N 0.11 deleterious(0.04) benign(0.28) TCGA-GN-A26C-01 14 106494539 106494539 G A IGHV2-5 Silent p.I13I 0.16 TCGA-GN-A26C-01 14 106573449 106573449 T G IGHV3-11 Silent p.G45G 0.10 TCGA-GN-A26C-01 14 106733388 106733388 G A IGHV1-24 Missense_Mutation p.S36L 0.11 deleterious(0.03) benign(0.397) TCGA-GN-A26C-01 14 106780771 106780771 C T IGHV4-28 Silent p.V31V 0.17 TCGA-GN-A26C-01 14 106993982 106993982 C T IGHV3-48 Silent p.G61G 0.19 TCGA-GN-A26C-01 14 106994058 106994058 G A IGHV3-48 Missense_Mutation p.S36F 0.17 deleterious_low_confidence(0.01) benign(0.292) TCGA-GN-A26C-01 14 107218772 107218772 G A IGHV3-74 Silent p.G85G 0.19 TCGA-GN-A26C-01 14 20295759 20295759 C T OR4N2 Missense_Mutation p.S51L 0.15 tolerated(0.53) benign(0.003) TCGA-GN-A26C-01 14 20404752 20404752 G A OR4K1 Nonsense_Mutation p.W309* 0.16 TCGA-GN-A26C-01 14 20483307 20483307 C T OR4K14 Missense_Mutation p.G16R 0.37 deleterious(0) probably_damaging(0.993) TCGA-GN-A26C-01 14 20692045 20692045 G T OR11H6 Silent p.G59G 0.16 TCGA-GN-A26C-01 14 20692327 20692327 C T OR11H6 Silent p.I153I 0.26 TCGA-GN-A26C-01 14 21488731 21488731 G A NDRG2 Missense_Mutation p.P160L 0.17 deleterious(0) benign(0.403) TCGA-GN-A26C-01 14 21795907 21795907 G A RPGRIP1 Missense_Mutation p.D946N 0.28 tolerated(0.13) benign(0.004) TCGA-GN-A26C-01 14 21798546 21798546 G A RPGRIP1 Missense_Mutation p.D1080N 0.21 tolerated(0.05) benign(0.434) TCGA-GN-A26C-01 14 22090574 22090574 C T TRAV1-1 Silent p.P60P 0.11 TCGA-GN-A26C-01 14 22111697 22111697 G A TRAV1-2 Missense_Mutation p.E73K 0.12 tolerated(0.68) benign(0.037) TCGA-GN-A26C-01 14 22111789 22111789 C T TRAV1-2 Silent p.Y103Y 0.23 TCGA-GN-A26C-01 14 23243150 23243150 C T SLC7A7 Missense_Mutation p.R474K 0.24 tolerated(1) benign(0) TCGA-GN-A26C-01 14 23549555 23549555 G A ACIN1 Missense_Mutation p.S388F 0.21 probably_damaging(0.993) TCGA-GN-A26C-01 14 23857379 23857379 C T MYH6 Silent p.Q1448Q 0.15 TCGA-GN-A26C-01 14 23886362 23886362 C T MYH7 Missense_Mutation p.E1507K 0.17 deleterious(0.02) possibly_damaging(0.737) TCGA-GN-A26C-01 14 23886368 23886368 G A MYH7 Silent p.L1505L 0.19 TCGA-GN-A26C-01 14 23886895 23886895 C T MYH7 Silent p.K1390K 0.24 TCGA-GN-A26C-01 14 23898167 23898167 G A MYH7 Silent p.F468F 0.15 TCGA-GN-A26C-01 14 23898500 23898500 G A MYH7 Silent p.L399L 0.18 TCGA-GN-A26C-01 14 24707806 24707806 G A GMPR2 Missense_Mutation p.G308E 0.22 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 14 24728335 24728335 C T TGM1 Missense_Mutation p.G369R 0.19 tolerated(0.07) probably_damaging(1) TCGA-GN-A26C-01 14 24839582 24839582 C T NFATC4 Silent p.I389I 0.12 TCGA-GN-A26C-01 14 31354198 31354198 A G COCH Intron 0.18 TCGA-GN-A26C-01 14 31598187 31598187 A G HECTD1 Silent p.L1464L 0.21 TCGA-GN-A26C-01 14 34145419 34145419 G A NPAS3 Silent p.V187V 0.15 TCGA-GN-A26C-01 14 35736016 35736016 C T KIAA0391 Silent p.S453S 0.18 TCGA-GN-A26C-01 14 36190931 36190931 G A RALGAPA1 Silent p.T743T 0.19 TCGA-GN-A26C-01 14 38679263 38679263 C T SSTR1 Silent p.F223F 0.11 TCGA-GN-A26C-01 14 38679758 38679758 C T SSTR1 Silent p.I388I 0.15 TCGA-GN-A26C-01 14 39815129 39815129 C T CTAGE5 Missense_Mutation p.A623V 0.17 tolerated(0.33) benign(0.012) TCGA-GN-A26C-01 14 45513937 45513937 A G FAM179B Missense_Mutation p.T1340A 0.17 tolerated(0.17) benign(0.007) TCGA-GN-A26C-01 14 53570438 53570438 G A DDHD1 Silent p.F325F 0.10 TCGA-GN-A26C-01 14 58030893 58030893 C T SLC35F4 Missense_Mutation p.R509K 0.17 tolerated(0.23) probably_damaging(0.99) TCGA-GN-A26C-01 14 59930726 59930726 G A GPR135 Missense_Mutation p.R407W 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 14 62567375 62567375 G A SYT16 Missense_Mutation p.E630K 0.15 deleterious(0.01) benign(0.142) TCGA-GN-A26C-01 14 63175164 63175164 G A KCNH5 Missense_Mutation p.R677C 0.13 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 14 63447677 63447677 C T KCNH5 Silent p.R285R 0.11 TCGA-GN-A26C-01 14 64537419 64537419 C T SYNE2 Silent p.S3496S 0.12 TCGA-GN-A26C-01 14 64735585 64735585 C T ESR2 Missense_Mutation p.D194N 0.21 deleterious(0.04) benign(0.365) TCGA-GN-A26C-01 14 65008167 65008167 C T HSPA2 Silent p.I200I 0.20 TCGA-GN-A26C-01 14 65055931 65055931 C T PPP1R36 Missense_Mutation p.P382S 0.12 tolerated_low_confidence(0.51) benign(0.005) TCGA-GN-A26C-01 14 65240078 65240078 C T SPTB Missense_Mutation p.E1680K 0.19 tolerated(0.16) probably_damaging(0.945) TCGA-GN-A26C-01 14 65263392 65263392 C T SPTB Silent p.L408L 0.13 TCGA-GN-A26C-01 14 69787435 69787435 G A GALNT16 Missense_Mutation p.G62E 0.13 tolerated(0.91) benign(0.001) TCGA-GN-A26C-01 14 70713226 70713226 C T ADAM21P1 RNA 0.12 TCGA-GN-A26C-01 14 73720562 73720562 G A PAPLN Missense_Mutation p.E372K 0.23 tolerated(0.24) probably_damaging(0.998) TCGA-GN-A26C-01 14 73753887 73753887 G C NUMB Missense_Mutation p.R196G 0.13 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 14 74179852 74179852 A T PNMA1 Missense_Mutation p.F164Y 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-GN-A26C-01 14 74531559 74531559 G A ALDH6A1 Missense_Mutation p.S490F 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 14 74759884 74759884 G A ABCD4 Silent p.L263L 0.10 TCGA-GN-A26C-01 14 75151229 75151229 G A AREL1 Silent p.P57P 0.27 TCGA-GN-A26C-01 14 78142163 78142163 G A ALKBH1 Silent p.F192F 0.15 TCGA-GN-A26C-01 14 78170753 78170753 G A ALKBH1 Missense_Mutation p.P84L 0.13 deleterious(0.02) possibly_damaging(0.766) TCGA-GN-A26C-01 14 81606187 81606187 T A TSHR Missense_Mutation p.F286Y 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A26C-01 14 88729771 88729771 C T KCNK10 Silent p.R59R 0.23 TCGA-GN-A26C-01 14 88737108 88737108 C T KCNK10 Intron 0.20 TCGA-GN-A26C-01 14 91700924 91700924 C T GPR68 Silent p.L157L 0.26 TCGA-GN-A26C-01 14 92136225 92136225 G A CATSPERB Missense_Mutation p.S407L 0.35 deleterious(0.01) possibly_damaging(0.844) TCGA-GN-A26C-01 14 92157875 92157875 A T CATSPERB Missense_Mutation p.F286I 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26C-01 14 92251687 92251687 C T TC2N Missense_Mutation p.G394E 0.21 tolerated(0.97) benign(0.004) TCGA-GN-A26C-01 14 93301978 93301978 C T GOLGA5 Missense_Mutation p.R674C 0.22 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.13 TCGA-GN-A26C-01 14 95033525 95033525 G A SERPINA4 Missense_Mutation p.E290K 0.15 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 14 95053788 95053788 G A SERPINA5 Missense_Mutation p.R30K 0.24 tolerated(1) benign(0.001) TCGA-GN-A26C-01 14 95570042 95570042 G A DICER1 Missense_Mutation p.P1231S 0.20 tolerated_low_confidence(0.09) benign(0.002) TCGA-GN-A26C-01 14 95658023 95658023 G A CLMN Missense_Mutation p.P963S 0.15 tolerated(0.12) benign(0.037) TCGA-GN-A26C-01 14 95669315 95669315 G A CLMN Missense_Mutation p.P791S 0.21 tolerated(0.17) benign(0.035) TCGA-GN-A26C-01 14 95670379 95670379 G A CLMN Missense_Mutation p.P436L 0.21 deleterious_low_confidence(0.04) benign(0.005) TCGA-GN-A26C-01 14 96707016 96707016 C T BDKRB2 Silent p.I117I 0.20 TCGA-GN-A26C-01 14 96707018 96707018 C T BDKRB2 Missense_Mutation p.S118F 0.22 tolerated(0.1) possibly_damaging(0.639) TCGA-GN-A26C-01 14 96944872 96944872 C T AK7 Silent p.I542I 0.19 TCGA-GN-A26C-01 14 99724043 99724043 G A BCL11B Silent p.N64N 0.08 TCGA-GN-A26C-01 14 99879391 99879391 G A SETD3 Missense_Mutation p.S249F 0.21 deleterious(0) possibly_damaging(0.908) TCGA-GN-A26C-01 14 99959117 99959117 C T CCNK Missense_Mutation p.P35S 0.19 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 14 99959118 99959118 C T CCNK Missense_Mutation p.P35L 0.19 deleterious(0.02) probably_damaging(1) TCGA-GN-A26C-01 15 101567520 101567520 C T LRRK1 Silent p.F820F 0.13 TCGA-GN-A26C-01 15 23811327 23811327 C T MKRN3 Missense_Mutation p.S133L 0.19 tolerated(0.68) benign(0.002) TCGA-GN-A26C-01 15 23811677 23811677 G A MKRN3 Missense_Mutation p.G250R 0.18 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 15 23932257 23932257 C T NDN Silent p.A36A 0.27 TCGA-GN-A26C-01 15 24921093 24921093 C T NPAP1 Missense_Mutation p.P27S 0.18 tolerated_low_confidence(0.19) possibly_damaging(0.803) TCGA-GN-A26C-01 15 24921521 24921521 C T NPAP1 Silent p.I169I 0.14 TCGA-GN-A26C-01 15 24922957 24922957 A G NPAP1 Missense_Mutation p.K648R 0.15 tolerated(0.78) benign(0.068) TCGA-GN-A26C-01 15 25304718 25304718 C T SNORD116-3 3'Flank 0.16 TCGA-GN-A26C-01 15 25325359 25325359 C T SNORD116-14 RNA 0.26 TCGA-GN-A26C-01 15 25427441 25427441 C T SNORD115-6 3'Flank 0.14 TCGA-GN-A26C-01 15 25436562 25436562 T C SNORD115-11 3'Flank 0.17 TCGA-GN-A26C-01 15 25958934 25958934 G A ATP10A Missense_Mutation p.S744F 0.13 deleterious(0) probably_damaging(0.947) TCGA-GN-A26C-01 15 28424363 28424363 C T HERC2 Missense_Mutation p.V2982I 0.18 benign(0.095) TCGA-GN-A26C-01 15 31218056 31218056 C T FAN1 Missense_Mutation p.A801V 0.16 tolerated(0.18) benign(0.025) TCGA-GN-A26C-01 15 33835822 33835822 G A RYR3 Splice_Site p.X216_splice 0.19 TCGA-GN-A26C-01 15 34376605 34376605 G A EMC7 Missense_Mutation p.S220L 0.13 deleterious(0.01) unknown(0) TCGA-GN-A26C-01 15 34376656 34376656 G A EMC7 Missense_Mutation p.S203F 0.19 deleterious(0.01) benign(0.254) TCGA-GN-A26C-01 15 35045253 35045253 C T GJD2 Missense_Mutation p.G131E 0.22 tolerated(1) probably_damaging(0.931) TCGA-GN-A26C-01 15 35083353 35083353 C T ACTC1 Missense_Mutation p.E318K 0.18 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-GN-A26C-01 15 40754187 40754187 C T BAHD1 Silent p.L503L 0.16 TCGA-GN-A26C-01 15 41120868 41120868 G A PPP1R14D 5'UTR 0.20 TCGA-GN-A26C-01 15 41373247 41373247 G A INO80 Missense_Mutation p.R300C 0.16 deleterious(0) probably_damaging(0.916) TCGA-GN-A26C-01 15 41509322 41509322 G A EXD1 Missense_Mutation p.S20L 0.30 deleterious(0.01) benign(0.055) TCGA-GN-A26C-01 15 41827083 41827083 G A RPAP1 Missense_Mutation p.P198S 0.20 tolerated(0.35) benign(0.219) TCGA-GN-A26C-01 15 42057156 42057156 C T MGA Missense_Mutation p.T2606I 0.17 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 15 42740573 42740573 G A ZNF106 Silent p.L921L 0.14 TCGA-GN-A26C-01 15 43307948 43307948 T C UBR1 Silent p.K1049K 0.16 TCGA-GN-A26C-01 15 45440112 45440112 G A DUOX1 Silent p.E853E 0.23 TCGA-GN-A26C-01 15 45783027 45783027 G A SLC30A4 Silent p.F197F 0.23 TCGA-GN-A26C-01 15 45968449 45968449 G A SQRDL Missense_Mutation p.D269N 0.17 tolerated(0.12) probably_damaging(0.951) TCGA-GN-A26C-01 15 48060851 48060851 C T SEMA6D Silent p.T613T 0.11 TCGA-GN-A26C-01 15 48500145 48500145 G A SLC12A1 Missense_Mutation p.G77R 0.25 deleterious(0.04) possibly_damaging(0.789) TCGA-GN-A26C-01 15 49073521 49073521 G A CEP152 Silent p.L483L 0.10 TCGA-GN-A26C-01 15 49776615 49776615 T C FGF7 Silent p.L167L 0.23 TCGA-GN-A26C-01 15 50215657 50215657 G A ATP8B4 Silent p.S559S 0.16 TCGA-GN-A26C-01 15 50489868 50489868 C T SLC27A2 Missense_Mutation p.S217F 0.17 deleterious(0.01) benign(0.035) TCGA-GN-A26C-01 15 50782635 50782635 C T USP8 Missense_Mutation p.S716F 0.24 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 15 50902009 50902009 G A TRPM7 Silent p.I810I 0.09 TCGA-GN-A26C-01 15 50902010 50902010 A T TRPM7 Missense_Mutation p.I810N 0.09 tolerated(0.48) possibly_damaging(0.806) TCGA-GN-A26C-01 15 51504608 51504608 C T CYP19A1 Missense_Mutation p.G391E 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 15 51535086 51535086 C T CYP19A1 Silent p.P8P 0.21 TCGA-GN-A26C-01 15 51773152 51773152 G A DMXL2 Missense_Mutation p.L2051F 0.11 deleterious(0) probably_damaging(0.949) TCGA-GN-A26C-01 15 53997325 53997325 C T WDR72 Missense_Mutation p.G403E 0.16 tolerated(1) benign(0.023) TCGA-GN-A26C-01 15 54685300 54685300 G A UNC13C Missense_Mutation p.D1590N 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GN-A26C-01 15 54786930 54786930 C T UNC13C Silent p.S1686S 0.18 TCGA-GN-A26C-01 15 57910262 57910262 G A MYZAP Missense_Mutation p.R65K 0.14 tolerated(1) benign(0.001) TCGA-GN-A26C-01 15 58840562 58840562 G A LIPC Missense_Mutation p.R281Q 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 15 59813483 59813483 C T FAM81A Missense_Mutation p.S338F 0.24 deleterious(0.02) possibly_damaging(0.828) TCGA-GN-A26C-01 15 60970872 60970872 C T RP11-219B17.2 5'Flank 0.14 TCGA-GN-A26C-01 15 62233965 62233965 G A VPS13C Missense_Mutation p.S1817L 0.12 tolerated(0.37) possibly_damaging(0.481) TCGA-GN-A26C-01 15 64218259 64218259 C T DAPK2 Silent p.T231T 0.12 TCGA-GN-A26C-01 15 64231517 64231517 T G DAPK2 Missense_Mutation p.H166P 0.15 deleterious(0.04) benign(0.005) TCGA-GN-A26C-01 15 65943172 65943172 G A SLC24A1 Silent p.E895E 0.18 TCGA-GN-A26C-01 15 71302271 71302271 G A LRRC49 Nonsense_Mutation p.W516* 0.16 TCGA-GN-A26C-01 15 74336704 74336704 C T PML Silent p.S668S 0.21 TCGA-GN-A26C-01 15 75091683 75091683 C T CSK Silent p.L105L 0.23 TCGA-GN-A26C-01 15 75143752 75143752 G A SCAMP2 Silent p.S138S 0.15 TCGA-GN-A26C-01 15 75143753 75143753 G A SCAMP2 Missense_Mutation p.S138F 0.13 deleterious(0.03) probably_damaging(0.99) TCGA-GN-A26C-01 15 75977176 75977176 G A CSPG4 Silent p.A1450A 0.17 TCGA-GN-A26C-01 15 78401687 78401687 G A CIB2 Missense_Mutation p.S79F 0.18 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 15 78789604 78789604 C T IREB2 Missense_Mutation p.S911F 0.14 deleterious(0) possibly_damaging(0.907) TCGA-GN-A26C-01 15 78834883 78834883 G A PSMA4 Silent p.L35L 0.19 TCGA-GN-A26C-01 15 78834884 78834884 G A PSMA4 Missense_Mutation p.G36R 0.19 deleterious(0.03) probably_damaging(1) TCGA-GN-A26C-01 15 78922017 78922017 C T CHRNB4 Silent p.R210R 0.18 TCGA-GN-A26C-01 15 79265743 79265743 G A RASGRF1 Missense_Mutation p.P1188S 0.13 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 15 80464532 80464532 C T FAH Silent p.I216I 0.14 TCGA-GN-A26C-01 15 81592044 81592044 C T IL16 Missense_Mutation p.R793C 0.17 deleterious(0) probably_damaging(0.97) TCGA-GN-A26C-01 15 82444573 82444573 G A EFTUD1 Missense_Mutation p.T741I 0.21 deleterious(0.02) benign(0.133) TCGA-GN-A26C-01 15 83346056 83346056 T C AP3B2 Silent p.K486K 0.20 TCGA-GN-A26C-01 15 83932016 83932016 C T BNC1 Missense_Mutation p.E663K 0.16 tolerated(0.18) benign(0.01) TCGA-GN-A26C-01 15 84286953 84286953 G A SH3GL3 Missense_Mutation p.E320K 0.15 deleterious(0) possibly_damaging(0.876) TCGA-GN-A26C-01 15 85406076 85406076 C T ALPK3 Missense_Mutation p.S1649F 0.17 deleterious(0.02) probably_damaging(0.982) TCGA-GN-A26C-01 15 86808009 86808009 G A AGBL1 Nonsense_Mutation p.W490* 0.14 TCGA-GN-A26C-01 15 89400471 89400471 G A ACAN Missense_Mutation p.G1552E 0.25 tolerated(0.93) benign(0.05) TCGA-GN-A26C-01 15 89744700 89744700 C T ABHD2 3'UTR 0.23 TCGA-GN-A26C-01 15 89753635 89753635 C T RLBP1 Missense_Mutation p.E279K 0.18 tolerated(0.35) benign(0.382) TCGA-GN-A26C-01 15 90336292 90336292 C T ANPEP Silent p.R741R 0.10 TCGA-GN-A26C-01 15 90344717 90344717 T C ANPEP Missense_Mutation p.E564G 0.12 deleterious(0.01) benign(0.288) TCGA-GN-A26C-01 15 91433182 91433182 C G FES Missense_Mutation p.P347A 0.13 tolerated(0.12) benign(0.001) TCGA-GN-A26C-01 15 92981653 92981653 G A ST8SIA2 Missense_Mutation p.D121N 0.18 possibly_damaging(0.824) TCGA-GN-A26C-01 15 93515498 93515498 C A CHD2 Missense_Mutation p.L786I 0.09 tolerated(0.07) benign(0.253) TCGA-GN-A26C-01 15 93515552 93515552 C T CHD2 Nonsense_Mutation p.R804* 0.21 TCGA-GN-A26C-01 15 94899414 94899414 C T MCTP2 Nonsense_Mutation p.Q352* 0.18 TCGA-GN-A26C-01 16 135716 135716 C T MPG Silent p.V279V 0.39 TCGA-GN-A26C-01 16 135717 135717 C T MPG Missense_Mutation p.R280W 0.38 deleterious(0.02) probably_damaging(0.952) TCGA-GN-A26C-01 16 14342884 14342884 G A MKL2 Silent p.Q733Q 0.50 TCGA-GN-A26C-01 16 19451758 19451758 G A TMC5 Missense_Mutation p.R133Q 0.18 tolerated_low_confidence(0.31) benign(0.005) TCGA-GN-A26C-01 16 20634745 20634745 G - ACSM1 3'UTR 0.42 TCGA-GN-A26C-01 16 2070544 2070544 G A NPW Missense_Mutation p.R141K 0.21 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-GN-A26C-01 16 22262623 22262623 C T EEF2K Missense_Mutation p.R200W 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 16 22320279 22320279 C T POLR3E Missense_Mutation p.P67S 0.30 tolerated(0.21) benign(0.05) TCGA-GN-A26C-01 16 23208674 23208674 G A SCNN1G Missense_Mutation p.D335N 0.25 tolerated(0.86) benign(0.026) TCGA-GN-A26C-01 16 24372881 24372881 C T CACNG3 Silent p.F215F 0.36 TCGA-GN-A26C-01 16 24580206 24580206 C T RBBP6 Missense_Mutation p.P732L 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-GN-A26C-01 16 24902310 24902310 G A SLC5A11 Missense_Mutation p.R262Q 0.37 deleterious(0.03) probably_damaging(0.924) TCGA-GN-A26C-01 16 26147239 26147239 C T HS3ST4 Silent p.F347F 0.42 TCGA-GN-A26C-01 16 27078289 27078289 T A C16orf82 RNA 0.16 TCGA-GN-A26C-01 16 27356321 27356321 C T IL4R Missense_Mutation p.S114F 0.24 tolerated(0.36) benign(0.033) TCGA-GN-A26C-01 16 28507203 28507203 G A APOBR Missense_Mutation p.E281K 0.20 deleterious(0) probably_damaging(0.975) TCGA-GN-A26C-01 16 28606886 28606886 G A SULT1A2 Missense_Mutation p.P87S 0.31 deleterious(0.03) possibly_damaging(0.747) TCGA-GN-A26C-01 16 2881830 2881830 G A ZG16B Silent p.V99V 0.41 TCGA-GN-A26C-01 16 28842006 28842006 T G ATXN2L Missense_Mutation p.S369A 0.24 tolerated(0.47) benign(0.015) TCGA-GN-A26C-01 16 28842007 28842007 C T ATXN2L Missense_Mutation p.S369F 0.25 tolerated(0.58) possibly_damaging(0.804) TCGA-GN-A26C-01 16 29896986 29896986 G A SEZ6L2 Silent p.I431I 0.38 TCGA-GN-A26C-01 16 30748566 30748566 C G SRCAP Missense_Mutation p.A2402G 0.22 probably_damaging(0.935) TCGA-GN-A26C-01 16 30958239 30958239 C T FBXL19 Missense_Mutation p.R626C 0.28 deleterious(0) probably_damaging(0.919) TCGA-GN-A26C-01 16 31230790 31230790 G T TRIM72 Nonsense_Mutation p.E223* 0.26 TCGA-GN-A26C-01 16 31382509 31382509 G A ITGAX Silent p.G605G 0.45 TCGA-GN-A26C-01 16 31421715 31421715 G A ITGAD Splice_Site p.X362_splice 0.26 TCGA-GN-A26C-01 16 31477422 31477422 C T ARMC5 Silent p.L674L 0.31 TCGA-GN-A26C-01 16 314847 314847 C T ITFG3 Silent p.I495I 0.42 TCGA-GN-A26C-01 16 46781861 46781861 G A MYLK3 Missense_Mutation p.P82L 0.45 tolerated(0.3) benign(0.006) TCGA-GN-A26C-01 16 4924587 4924587 C T UBN1 Missense_Mutation p.P726S 0.29 tolerated(0.21) possibly_damaging(0.656) TCGA-GN-A26C-01 16 49670603 49670603 G A ZNF423 Silent p.I820I 0.52 TCGA-GN-A26C-01 16 56423246 56423246 G A AMFR Missense_Mutation p.P376L 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 16 56928523 56928523 C T SLC12A3 Nonsense_Mutation p.Q877* 0.38 TCGA-GN-A26C-01 16 57713196 57713196 C T GPR97 Silent p.I200I 0.38 TCGA-GN-A26C-01 16 58757769 58757769 G A GOT2 Missense_Mutation p.P43S 0.17 deleterious(0.01) benign(0.023) TCGA-GN-A26C-01 16 66764025 66764025 G A DYNC1LI2 Missense_Mutation p.P344L 0.38 tolerated(0.18) probably_damaging(0.96) TCGA-GN-A26C-01 16 66886680 66886680 G A CA7 Nonsense_Mutation p.W194* 0.36 TCGA-GN-A26C-01 16 67214391 67214391 C T KIAA0895L Nonsense_Mutation p.W41* 0.34 TCGA-GN-A26C-01 16 67214392 67214392 C T KIAA0895L Nonsense_Mutation p.W41* 0.36 TCGA-GN-A26C-01 16 67270547 67270547 G A FHOD1 Missense_Mutation p.P411L 0.40 tolerated(0.1) benign(0.005) TCGA-GN-A26C-01 16 68055780 68055780 G A DDX28 Silent p.S442S 0.31 TCGA-GN-A26C-01 16 70557456 70557456 C T COG4 5'UTR 0.36 TCGA-GN-A26C-01 16 70843758 70843758 G A HYDIN Silent p.V4937V 0.32 TCGA-GN-A26C-01 16 70913365 70913365 G A HYDIN Silent p.L3464L 0.31 TCGA-GN-A26C-01 16 75481529 75481529 G A TMEM170A Missense_Mutation p.A121V 0.37 deleterious(0) probably_damaging(0.98) TCGA-GN-A26C-01 16 75563795 75563795 C T CHST5 Missense_Mutation p.G163D 0.36 tolerated(1) benign(0.02) TCGA-GN-A26C-01 16 7629803 7629803 G A RBFOX1 Missense_Mutation p.D119N 0.30 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 16 76587765 76587765 C T RP11-58C22.1 Missense_Mutation p.L40F 0.12 deleterious(0) benign(0.019) TCGA-GN-A26C-01 16 80583473 80583473 C T DYNLRB2 Missense_Mutation p.R58C 0.37 deleterious(0.02) probably_damaging(1) TCGA-GN-A26C-01 16 80667020 80667020 C T CDYL2 Missense_Mutation p.E244K 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A26C-01 16 81145960 81145960 C T PKD1L2 RNA 0.45 TCGA-GN-A26C-01 16 81303789 81303789 G A BCMO1 Missense_Mutation p.R290K 0.37 tolerated(0.67) benign(0.014) TCGA-GN-A26C-01 16 81398669 81398669 C T GAN Missense_Mutation p.P443S 0.42 tolerated(0.12) probably_damaging(0.986) TCGA-GN-A26C-01 16 83520204 83520204 G A CDH13 Missense_Mutation p.D349N 0.45 tolerated(1) probably_damaging(0.999) TCGA-GN-A26C-01 16 83948703 83948703 C T MLYCD Missense_Mutation p.S364L 0.35 tolerated(0.21) benign(0.108) TCGA-GN-A26C-01 16 84224894 84224894 G A ADAD2 Missense_Mutation p.A20T 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A26C-01 16 84270480 84270480 C T KCNG4 Missense_Mutation p.M204I 0.40 tolerated(0.06) benign(0.032) TCGA-GN-A26C-01 16 89598979 89598979 C T SPG7 Missense_Mutation p.T420I 0.32 deleterious(0.03) benign(0.288) TCGA-GN-A26C-01 16 9857330 9857330 G A GRIN2A Silent p.L1357L 0.33 TCGA-GN-A26C-01 17 10258228 10258228 C T MYH13 Silent p.K295K 0.29 TCGA-GN-A26C-01 17 10319000 10319000 G A MYH8 Silent p.I179I 0.34 TCGA-GN-A26C-01 17 10357202 10357202 C T MYH4 Missense_Mutation p.E898K 0.43 deleterious(0) benign(0.119) TCGA-GN-A26C-01 17 10362706 10362706 G A MYH4 Silent p.F483F 0.32 TCGA-GN-A26C-01 17 10400655 10400655 C T MYH1 Missense_Mutation p.E1494K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 17 11572995 11572995 G A DNAH9 Silent p.K1079K 0.31 TCGA-GN-A26C-01 17 11584057 11584057 G A DNAH9 Nonsense_Mutation p.W1198* 0.32 TCGA-GN-A26C-01 17 11597700 11597700 G A DNAH9 Missense_Mutation p.R1603Q 0.50 probably_damaging(1) TCGA-GN-A26C-01 17 11687023 11687023 G A DNAH9 Missense_Mutation p.M2593I 0.25 probably_damaging(0.94) TCGA-GN-A26C-01 17 12883539 12883539 C T ARHGAP44 Missense_Mutation p.T643I 0.22 deleterious(0) benign(0.372) TCGA-GN-A26C-01 17 15212126 15212126 C T TEKT3 Missense_Mutation p.E371K 0.46 deleterious(0.03) probably_damaging(0.966) TCGA-GN-A26C-01 17 15517312 15517312 C T RP11-385D13.1 Missense_Mutation p.E546K 0.34 tolerated_low_confidence(0.16) benign(0.02) TCGA-GN-A26C-01 17 1585460 1585460 G A PRPF8 Missense_Mutation p.P133S 0.47 deleterious(0) probably_damaging(0.981) TCGA-GN-A26C-01 17 18040901 18040901 C T MYO15A Silent p.L1595L 0.39 TCGA-GN-A26C-01 17 18397763 18397763 C T LGALS9C 3'UTR 0.32 TCGA-GN-A26C-01 17 20906244 20906244 G A USP22 3'UTR 0.43 TCGA-GN-A26C-01 17 21731336 21731336 C T UBBP4 Intron 0.34 TCGA-GN-A26C-01 17 2601573 2601573 G A CLUH Silent p.I488I 0.33 TCGA-GN-A26C-01 17 26666622 26666622 G A TNFAIP1 Silent p.L25L 0.29 TCGA-GN-A26C-01 17 26696014 26696014 C T VTN Silent p.L235L 0.33 TCGA-GN-A26C-01 17 2901664 2901664 C T RAP1GAP2 Silent p.S398S 0.41 TCGA-GN-A26C-01 17 2909246 2909246 C T RAP1GAP2 Intron 0.39 TCGA-GN-A26C-01 17 29226340 29226340 C T TEFM Silent p.K310K 0.41 TCGA-GN-A26C-01 17 29550551 29550551 T A NF1 Nonsense_Mutation p.L604* 0.33 TCGA-GN-A26C-01 17 30211497 30211497 G A UTP6 Missense_Mutation p.S244L 0.25 tolerated(0.06) benign(0.137) TCGA-GN-A26C-01 17 33481754 33481754 A G UNC45B Silent p.Q211Q 0.34 TCGA-GN-A26C-01 17 34842534 34842534 C T ZNHIT3 5'UTR 0.34 TCGA-GN-A26C-01 17 36093644 36093644 C A HNF1B Missense_Mutation p.G239W 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 17 37331358 37331358 G A CACNB1 3'UTR 0.47 TCGA-GN-A26C-01 17 38127782 38127782 C T GSDMA Silent p.S188S 0.57 TCGA-GN-A26C-01 17 3833709 3833709 G A ATP2A3 Missense_Mutation p.S877F 0.27 deleterious(0.01) possibly_damaging(0.694) TCGA-GN-A26C-01 17 39114917 39114917 C T KRT39 Missense_Mutation p.G471E 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 17 39279858 39279858 G A KRTAP4-12 Nonsense_Mutation p.R173* 0.37 TCGA-GN-A26C-01 17 39340903 39340903 G A KRTAP4-1 Silent p.V68V 0.43 TCGA-GN-A26C-01 17 40343194 40343194 G A GHDC Silent p.P308P 0.39 TCGA-GN-A26C-01 17 40939873 40939873 G A WNK4 Missense_Mutation p.G607R 0.46 tolerated(0.41) unknown(0) TCGA-GN-A26C-01 17 40996824 40996824 C T AOC2 Nonsense_Mutation p.R61* 0.42 TCGA-GN-A26C-01 17 42170530 42170530 G A HDAC5 Missense_Mutation p.L192F 0.25 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 17 42458006 42458006 G A ITGA2B Silent p.I467I 0.35 TCGA-GN-A26C-01 17 42475253 42475253 G A GPATCH8 Missense_Mutation p.H1398Y 0.33 deleterious(0.03) unknown(0) TCGA-GN-A26C-01 17 4348457 4348457 C T SPNS3 Silent p.S132S 0.12 TCGA-GN-A26C-01 17 43552724 43552724 G A PLEKHM1 Missense_Mutation p.S222F 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-GN-A26C-01 17 43912069 43912069 C T CRHR1 Missense_Mutation p.S425F 0.30 deleterious(0) possibly_damaging(0.636) TCGA-GN-A26C-01 17 44845715 44845715 G A WNT3 Missense_Mutation p.R347C 0.27 deleterious(0) possibly_damaging(0.846) TCGA-GN-A26C-01 17 4576113 4576113 G A PELP1 Missense_Mutation p.P725S 0.30 possibly_damaging(0.641) TCGA-GN-A26C-01 17 4675331 4675331 C T TM4SF5 Silent p.T38T 0.35 TCGA-GN-A26C-01 17 47076520 47076520 C A IGF2BP1 Silent p.P75P 0.11 TCGA-GN-A26C-01 17 47115659 47115659 C T IGF2BP1 Silent p.P177P 0.42 TCGA-GN-A26C-01 17 4722387 4722387 G C PLD2 Missense_Mutation p.A728P 0.35 tolerated(0.31) benign(0.167) TCGA-GN-A26C-01 17 47246131 47246131 G A B4GALNT2 Missense_Mutation p.G455E 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 17 4797353 4797353 C T MINK1 Missense_Mutation p.P879S 0.45 tolerated(0.66) benign(0) TCGA-GN-A26C-01 17 48268796 48268796 C T COL1A1 Missense_Mutation p.G728E 0.36 probably_damaging(1) TCGA-GN-A26C-01 17 4841656 4841656 G A SLC25A11 Silent p.S205S 0.45 TCGA-GN-A26C-01 17 48669145 48669145 G A CACNA1G Silent p.R895R 0.24 TCGA-GN-A26C-01 17 48750896 48750896 G A ABCC3 Missense_Mutation p.D826N 0.39 tolerated(0.13) benign(0.013) TCGA-GN-A26C-01 17 50008359 50008359 C T CA10 Silent p.G90G 0.33 TCGA-GN-A26C-01 17 5071275 5071275 G A USP6 Missense_Mutation p.E1029K 0.43 tolerated_low_confidence(0.08) possibly_damaging(0.771) TCGA-GN-A26C-01 17 54939525 54939525 C T DGKE Silent p.V479V 0.22 TCGA-GN-A26C-01 17 56247718 56247718 G A OR4D2 Silent p.R234R 0.34 TCGA-GN-A26C-01 17 56285884 56285884 G A MKS1 Missense_Mutation p.S362F 0.39 tolerated(0.08) benign(0.185) TCGA-GN-A26C-01 17 57262837 57262837 C T PRR11 Missense_Mutation p.R106C 0.34 deleterious(0.05) benign(0.187) TCGA-GN-A26C-01 17 57963527 57963527 C T TUBD1 Silent p.K79K 0.39 TCGA-GN-A26C-01 17 58824639 58824639 T A BCAS3 Missense_Mutation p.F134L 0.41 tolerated(0.87) benign(0.001) TCGA-GN-A26C-01 17 59949765 59949765 G A INTS2 Missense_Mutation p.S888F 0.24 deleterious(0) possibly_damaging(0.49) TCGA-GN-A26C-01 17 60813350 60813350 C T MARCH10 Missense_Mutation p.E627K 0.40 tolerated(0.18) benign(0.367) TCGA-GN-A26C-01 17 61613053 61613053 G A KCNH6 Silent p.L375L 0.40 TCGA-GN-A26C-01 17 62291174 62291174 G A TEX2 Missense_Mutation p.S135F 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.597) TCGA-GN-A26C-01 17 6330342 6330342 C T AIPL1 Nonsense_Mutation p.W167* 0.34 TCGA-GN-A26C-01 17 6441394 6441394 G A PITPNM3 Missense_Mutation p.P11S 0.23 tolerated(1) unknown(0) TCGA-GN-A26C-01 17 65119265 65119265 G A HELZ Missense_Mutation p.P1151S 0.39 tolerated_low_confidence(0.07) benign(0.138) TCGA-GN-A26C-01 17 6554934 6554934 C T MED31 5'UTR 0.50 TCGA-GN-A26C-01 17 65628352 65628352 G A PITPNC1 Missense_Mutation p.E154K 0.24 deleterious(0.04) probably_damaging(0.919) TCGA-GN-A26C-01 17 6597468 6597468 G A SLC13A5 Silent p.F368F 0.32 TCGA-GN-A26C-01 17 6609960 6609960 C T SLC13A5 Splice_Site p.X123_splice 0.24 TCGA-GN-A26C-01 17 66898931 66898931 G A ABCA8 Missense_Mutation p.S856F 0.42 deleterious(0) probably_damaging(0.928) TCGA-GN-A26C-01 17 67075082 67075082 G A ABCA6 3'UTR 0.54 TCGA-GN-A26C-01 17 67411137 67411137 G A MAP2K6 Silent p.S4S 0.34 TCGA-GN-A26C-01 17 68128578 68128578 C T KCNJ16 Missense_Mutation p.S117F 0.17 deleterious(0) possibly_damaging(0.884) TCGA-GN-A26C-01 17 7161984 7161984 C T ELP5 Silent p.S239S 0.41 TCGA-GN-A26C-01 17 7187572 7187572 C T SLC2A4 Silent p.L201L 0.44 TCGA-GN-A26C-01 17 72540860 72540860 G A CD300C Silent p.T96T 0.44 TCGA-GN-A26C-01 17 72692343 72692343 G A CD300LF Silent p.S191S 0.34 TCGA-GN-A26C-01 17 73567118 73567118 G A LLGL2 Missense_Mutation p.A705T 0.37 tolerated(0.11) possibly_damaging(0.76) TCGA-GN-A26C-01 17 74004096 74004096 C T EVPL Silent p.G1730G 0.25 TCGA-GN-A26C-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.46 TCGA-GN-A26C-01 17 76046866 76046866 C T TNRC6C Missense_Mutation p.P575S 0.32 tolerated(0.48) benign(0.023) TCGA-GN-A26C-01 17 7611341 7611341 C T EFNB3 Missense_Mutation p.P63L 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 17 76694375 76694375 G A CYTH1 Nonsense_Mutation p.R263* 0.40 TCGA-GN-A26C-01 17 76694376 76694376 G A CYTH1 Silent p.D262D 0.38 TCGA-GN-A26C-01 17 7722593 7722593 G A DNAH2 Missense_Mutation p.D3628N 0.40 probably_damaging(0.995) TCGA-GN-A26C-01 17 77768609 77768609 G A CBX8 Missense_Mutation p.S332F 0.33 tolerated(0.05) possibly_damaging(0.485) TCGA-GN-A26C-01 17 79911046 79911046 G A NOTUM Missense_Mutation p.P428S 0.11 tolerated(0.12) benign(0.367) TCGA-GN-A26C-01 17 80046119 80046119 G A FASN Silent p.F886F 0.21 TCGA-GN-A26C-01 17 80446092 80446092 G A NARF 3'UTR 0.33 TCGA-GN-A26C-01 17 8054012 8054012 G A PER1 Silent p.L5L 0.25 TCGA-GN-A26C-01 17 8054013 8054013 G A PER1 Silent p.P4P 0.26 TCGA-GN-A26C-01 17 80541952 80541952 C T FOXK2 Silent p.T389T 0.40 TCGA-GN-A26C-01 17 9515626 9515626 G A WDR16 Silent p.K285K 0.38 TCGA-GN-A26C-01 17 9596507 9596507 C T USP43 Missense_Mutation p.P473S 0.34 deleterious(0.03) possibly_damaging(0.522) TCGA-GN-A26C-01 18 12699154 12699154 C T CEP76 Missense_Mutation p.G115E 0.13 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 18 13826292 13826292 C T MC5R Silent p.V176V 0.16 TCGA-GN-A26C-01 18 19997320 19997320 G A CTAGE1 Missense_Mutation p.S152F 0.30 tolerated(0.11) benign(0.222) TCGA-GN-A26C-01 18 21355756 21355756 C T LAMA3 Missense_Mutation p.P425L 0.33 benign(0.259) TCGA-GN-A26C-01 18 2539090 2539090 C T METTL4 Missense_Mutation p.R443Q 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 18 2544257 2544257 G A METTL4 Missense_Mutation p.P404S 0.12 deleterious(0) probably_damaging(0.959) TCGA-GN-A26C-01 18 2763772 2763772 T A SMCHD1 Silent p.G1568G 0.33 TCGA-GN-A26C-01 18 28671000 28671000 G A DSC2 Silent p.F155F 0.17 TCGA-GN-A26C-01 18 28711568 28711568 G A DSC1 Missense_Mutation p.R826W 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 18 2891059 2891059 G A EMILIN2 Missense_Mutation p.E312K 0.13 deleterious(0.02) possibly_damaging(0.819) TCGA-GN-A26C-01 18 28926140 28926140 C T DSG1 Silent p.F693F 0.32 TCGA-GN-A26C-01 18 28991347 28991347 G A DSG4 Missense_Mutation p.G783E 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 18 28992824 28992824 C T DSG4 Nonsense_Mutation p.R816* 0.24 TCGA-GN-A26C-01 18 29038468 29038468 G A DSG3 Missense_Mutation p.D93N 0.11 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 18 29039878 29039878 C T DSG3 Silent p.F196F 0.33 TCGA-GN-A26C-01 18 29451033 29451033 C T TRAPPC8 Missense_Mutation p.E705K 0.27 deleterious(0.04) benign(0.017) TCGA-GN-A26C-01 18 29797058 29797058 C T MEP1B Nonsense_Mutation p.R622* 0.22 TCGA-GN-A26C-01 18 31324134 31324134 C T ASXL3 Missense_Mutation p.S1441L 0.29 benign(0.11) TCGA-GN-A26C-01 18 43698273 43698273 C T HAUS1 Missense_Mutation p.S111L 0.23 deleterious(0) probably_damaging(0.949) TCGA-GN-A26C-01 18 44027629 44027629 C T RNF165 Missense_Mutation p.P197S 0.26 tolerated(0.08) benign(0.062) TCGA-GN-A26C-01 18 44559713 44559713 C T TCEB3B Missense_Mutation p.M641I 0.10 deleterious(0.02) benign(0.007) TCGA-GN-A26C-01 18 44560950 44560950 G A TCEB3B Missense_Mutation p.S229L 0.33 deleterious(0.03) probably_damaging(0.99) TCGA-GN-A26C-01 18 44560960 44560960 C T TCEB3B Missense_Mutation p.G226R 0.26 deleterious(0.04) possibly_damaging(0.801) TCGA-GN-A26C-01 18 44560961 44560961 C T TCEB3B Silent p.K225K 0.27 TCGA-GN-A26C-01 18 45567391 45567391 C T ZBTB7C Missense_Mutation p.D30N 0.15 tolerated(0.23) benign(0.195) TCGA-GN-A26C-01 18 48252373 48252373 G A MAPK4 Missense_Mutation p.D299N 0.09 deleterious(0.05) probably_damaging(0.99) TCGA-GN-A26C-01 18 48325592 48325592 C T MRO 3'UTR 0.47 TCGA-GN-A26C-01 18 48325593 48325593 C T MRO 3'UTR 0.47 TCGA-GN-A26C-01 18 50918165 50918165 G A DCC Missense_Mutation p.D866N 0.08 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.15 TCGA-GN-A26C-01 18 51025846 51025846 G A DCC Silent p.P1359P 0.19 TCGA-GN-A26C-01 18 54358469 54358469 C T WDR7 Missense_Mutation p.S247F 0.13 deleterious(0) possibly_damaging(0.901) TCGA-GN-A26C-01 18 55355657 55355657 T C ATP8B1 Missense_Mutation p.K435E 0.34 tolerated(0.74) possibly_damaging(0.901) TCGA-GN-A26C-01 18 56246303 56246303 C T ALPK2 Missense_Mutation p.E569K 0.38 tolerated(0.08) benign(0.141) TCGA-GN-A26C-01 18 60027279 60027279 A C TNFRSF11A Missense_Mutation p.N205H 0.36 tolerated(0.12) benign(0.04) TCGA-GN-A26C-01 18 61226926 61226926 G A SERPINB12 Missense_Mutation p.G120E 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A26C-01 18 61233848 61233848 G A SERPINB12 Silent p.R274R 0.26 TCGA-GN-A26C-01 18 61309039 61309039 C T SERPINB4 Silent p.K102K 0.20 TCGA-GN-A26C-01 18 61310815 61310815 G A SERPINB4 5'UTR 0.19 TCGA-GN-A26C-01 18 61468235 61468235 G A SERPINB7 Missense_Mutation p.D245N 0.26 tolerated(0.55) benign(0.133) TCGA-GN-A26C-01 18 61558813 61558813 C T SERPINB2 Silent p.G45G 0.28 TCGA-GN-A26C-01 18 61569055 61569055 G A SERPINB2 Missense_Mutation p.G206E 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 18 65181576 65181576 G A DSEL Silent p.I100I 0.09 TCGA-GN-A26C-01 18 6859837 6859837 C T ARHGAP28 Silent p.L64L 0.13 TCGA-GN-A26C-01 18 6986233 6986233 A C LAMA1 Missense_Mutation p.L1761R 0.17 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 18 7002281 7002281 G A LAMA1 Missense_Mutation p.P1455L 0.30 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 18 7037703 7037703 C T LAMA1 Silent p.R537R 0.33 TCGA-GN-A26C-01 18 70461626 70461626 C T NETO1 Silent p.K161K 0.06 TCGA-GN-A26C-01 18 70526092 70526092 C T NETO1 Missense_Mutation p.M146I 0.24 tolerated(0.57) benign(0.001) TCGA-GN-A26C-01 18 71797839 71797839 C T FBXO15 Nonsense_Mutation p.W129* 0.10 TCGA-GN-A26C-01 18 72183516 72183516 C T CNDP2 Silent p.I319I 0.24 TCGA-GN-A26C-01 18 72775756 72775756 G A ZNF407 Missense_Mutation p.E2027K 0.22 deleterious(0.01) benign(0.156) TCGA-GN-A26C-01 18 74587487 74587487 T C ZNF236 Missense_Mutation p.F234S 0.18 deleterious(0) possibly_damaging(0.9) TCGA-GN-A26C-01 18 76753443 76753443 C T SALL3 Silent p.V484V 0.29 TCGA-GN-A26C-01 18 9557371 9557371 G A PPP4R1 Nonsense_Mutation p.R680* 0.26 TCGA-GN-A26C-01 19 1003133 1003133 C T GRIN3B Missense_Mutation p.P144L 0.55 deleterious(0.04) benign(0.027) TCGA-GN-A26C-01 19 10089891 10089891 G A COL5A3 Silent p.L931L 0.10 TCGA-GN-A26C-01 19 10398348 10398348 C T ICAM4 Nonsense_Mutation p.R152* 0.29 TCGA-GN-A26C-01 19 1051955 1051955 C T ABCA7 Missense_Mutation p.L993F 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 19 10528343 10528343 G A PDE4A 5'Flank 0.22 TCGA-GN-A26C-01 19 10561537 10561537 C T PDE4A Silent p.L235L 0.26 TCGA-GN-A26C-01 19 10692226 10692226 G A AP1M2 Silent p.S161S 0.30 TCGA-GN-A26C-01 19 11361648 11361648 C T DOCK6 Missense_Mutation p.E208K 0.29 tolerated(0.15) benign(0.011) TCGA-GN-A26C-01 19 12014453 12014453 T C ZNF69 Silent p.I29I 0.17 TCGA-GN-A26C-01 19 13414658 13414658 C T CACNA1A Missense_Mutation p.G676E 0.26 probably_damaging(0.998) TCGA-GN-A26C-01 19 14163023 14163023 C T IL27RA Missense_Mutation p.S611F 0.28 deleterious(0) possibly_damaging(0.516) TCGA-GN-A26C-01 19 14710852 14710852 G A CLEC17A Missense_Mutation p.R251Q 0.33 tolerated(0.26) possibly_damaging(0.775) TCGA-GN-A26C-01 19 14744082 14744082 C T EMR3 Nonsense_Mutation p.W506* 0.25 TCGA-GN-A26C-01 19 14752363 14752363 G A EMR3 Silent p.L372L 0.16 TCGA-GN-A26C-01 19 14875257 14875257 G A EMR2 Missense_Mutation p.P358S 0.19 tolerated(0.33) benign(0.004) TCGA-GN-A26C-01 19 14938326 14938326 G A OR7A5 Missense_Mutation p.S243F 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GN-A26C-01 19 15131429 15131429 C T CCDC105 Nonsense_Mutation p.Q278* 0.20 TCGA-GN-A26C-01 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.35 TCGA-GN-A26C-01 19 15763658 15763658 C T CYP4F3 Silent p.L337L 0.16 TCGA-GN-A26C-01 19 15795991 15795991 C T CYP4F12 Missense_Mutation p.P367S 0.19 tolerated(0.34) benign(0.023) TCGA-GN-A26C-01 19 15807935 15807935 G A CYP4F12 3'UTR 0.37 TCGA-GN-A26C-01 19 15839162 15839162 C T OR10H2 Silent p.F103F 0.21 TCGA-GN-A26C-01 19 16591507 16591507 C T CALR3 Missense_Mutation p.G310E 0.24 deleterious(0) possibly_damaging(0.635) TCGA-GN-A26C-01 19 16611602 16611602 G A C19orf44 Splice_Site 0.29 TCGA-GN-A26C-01 19 16617511 16617511 G A C19orf44 Splice_Site p.X359_splice 0.21 TCGA-GN-A26C-01 19 16633892 16633892 G A CHERP Missense_Mutation p.P651S 0.25 deleterious(0.01) possibly_damaging(0.576) TCGA-GN-A26C-01 19 16633893 16633893 G A CHERP Silent p.L650L 0.26 TCGA-GN-A26C-01 19 16902209 16902209 G A NWD1 Missense_Mutation p.G997R 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A26C-01 19 17014391 17014391 C T CPAMD8 Missense_Mutation p.D1531N 0.36 deleterious(0.04) possibly_damaging(0.549) TCGA-GN-A26C-01 19 17039941 17039941 C T CPAMD8 Silent p.V1032V 0.26 TCGA-GN-A26C-01 19 17476443 17476443 G A PLVAP Silent p.S277S 0.26 TCGA-GN-A26C-01 19 17488043 17488043 G A PLVAP Missense_Mutation p.R19W 0.23 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 19 17533128 17533128 C T MVB12A Intron 0.25 TCGA-GN-A26C-01 19 17690299 17690299 C T COLGALT1 Silent p.D425D 0.30 TCGA-GN-A26C-01 19 17690300 17690300 C T COLGALT1 Missense_Mutation p.R426W 0.30 deleterious(0) probably_damaging(0.927) TCGA-GN-A26C-01 19 17759345 17759345 C T UNC13A Missense_Mutation p.E571K 0.25 deleterious(0) probably_damaging(0.988) TCGA-GN-A26C-01 19 17785506 17785506 C T UNC13A Missense_Mutation p.V38M 0.23 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-GN-A26C-01 19 17893836 17893836 C T FCHO1 Nonsense_Mutation p.R650* 0.22 TCGA-GN-A26C-01 19 17948773 17948773 C T JAK3 Missense_Mutation p.V557I 0.30 tolerated(0.15) probably_damaging(0.999) TCGA-GN-A26C-01 19 17972209 17972209 C T RPL18A Silent p.S42S 0.23 TCGA-GN-A26C-01 19 18001725 18001725 G A SLC5A5 Missense_Mutation p.G561E 0.34 tolerated(0.22) probably_damaging(1) TCGA-GN-A26C-01 19 18054467 18054467 C T CCDC124 Silent p.L205L 0.28 TCGA-GN-A26C-01 19 18182980 18182980 C T IL12RB1 Silent p.S321S 0.25 TCGA-GN-A26C-01 19 18547219 18547219 C T ISYNA1 Nonsense_Mutation p.W227* 0.31 TCGA-GN-A26C-01 19 18675733 18675733 C T KXD1 Silent p.S52S 0.32 TCGA-GN-A26C-01 19 18675783 18675783 C T KXD1 Missense_Mutation p.T69I 0.19 tolerated(0.47) benign(0.102) TCGA-GN-A26C-01 19 18679325 18679325 G A KXD1 Missense_Mutation p.D139N 0.26 tolerated(0.1) benign(0.025) TCGA-GN-A26C-01 19 18961604 18961604 C T UPF1 Missense_Mutation p.P246L 0.36 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 19 18976152 18976152 C T UPF1 Missense_Mutation p.A971V 0.24 tolerated(0.59) benign(0.096) TCGA-GN-A26C-01 19 19313657 19313657 C T NR2C2AP Silent p.Q24Q 0.18 TCGA-GN-A26C-01 19 19766392 19766392 G A ATP13A1 Silent p.F447F 0.17 TCGA-GN-A26C-01 19 22154722 22154722 G A ZNF208 Silent p.F1038F 0.29 TCGA-GN-A26C-01 19 22155201 22155201 G A ZNF208 Missense_Mutation p.H879Y 0.24 deleterious(0.01) unknown(0) TCGA-GN-A26C-01 19 22363477 22363477 G A ZNF676 Nonsense_Mutation p.R348* 0.17 TCGA-GN-A26C-01 19 22940058 22940058 G A ZNF99 3'Flank 0.28 TCGA-GN-A26C-01 19 22941146 22941146 G A ZNF99 Missense_Mutation p.S522L 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-GN-A26C-01 19 23159812 23159812 C T ZNF728 Silent p.E109E 0.23 TCGA-GN-A26C-01 19 24010237 24010237 G A RPSAP58 Missense_Mutation p.A92T 0.32 tolerated(0.09) benign(0.075) TCGA-GN-A26C-01 19 2433975 2433975 G A LMNB2 Missense_Mutation p.P444L 0.18 tolerated(0.1) benign(0.001) TCGA-GN-A26C-01 19 307313 307313 G A MIER2 Silent p.F474F 0.38 TCGA-GN-A26C-01 19 30936617 30936617 C T ZNF536 Silent p.H716H 0.41 TCGA-GN-A26C-01 19 31039159 31039159 C T ZNF536 Missense_Mutation p.S878L 0.35 deleterious(0) benign(0.098) TCGA-GN-A26C-01 19 3192620 3192620 C T NCLN Missense_Mutation p.P113S 0.24 deleterious(0.04) probably_damaging(0.963) TCGA-GN-A26C-01 19 3192621 3192621 C T NCLN Missense_Mutation p.P113L 0.24 deleterious(0) probably_damaging(0.931) TCGA-GN-A26C-01 19 33353095 33353095 G A SLC7A9 Silent p.F211F 0.33 TCGA-GN-A26C-01 19 33482830 33482830 G C RHPN2 Missense_Mutation p.R515G 0.26 tolerated(0.36) benign(0.391) TCGA-GN-A26C-01 19 34791850 34791850 G A KIAA0355 Missense_Mutation p.E158K 0.36 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-GN-A26C-01 19 35657203 35657203 C T FXYD5 Silent p.F154F 0.40 TCGA-GN-A26C-01 19 35863086 35863086 C T GPR42 Silent p.V275V 0.29 TCGA-GN-A26C-01 19 35941189 35941189 C T FFAR2 Silent p.P191P 0.33 TCGA-GN-A26C-01 19 36349727 36349727 C T KIRREL2 Silent p.F161F 0.23 TCGA-GN-A26C-01 19 36349728 36349728 C T KIRREL2 Nonsense_Mutation p.R162* 0.22 TCGA-GN-A26C-01 19 36357106 36357106 G A KIRREL2 Silent p.L613L 0.29 TCGA-GN-A26C-01 19 36357125 36357125 G A KIRREL2 Missense_Mutation p.G620R 0.26 deleterious(0.03) probably_damaging(0.969) TCGA-GN-A26C-01 19 36831980 36831980 G A ZFP14 Missense_Mutation p.H250Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 19 3823267 3823267 C T ZFR2 Missense_Mutation p.V450M 0.19 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 19 3831710 3831710 G A ZFR2 Silent p.I182I 0.29 TCGA-GN-A26C-01 19 38848958 38848958 C T CATSPERG Silent p.F452F 0.32 TCGA-GN-A26C-01 19 38987159 38987159 G A RYR1 Silent p.L2258L 0.40 TCGA-GN-A26C-01 19 38995653 38995653 C T RYR1 Missense_Mutation p.P2748S 0.32 benign(0.013) TCGA-GN-A26C-01 19 39299477 39299477 C T LGALS4 Silent p.G82G 0.37 TCGA-GN-A26C-01 19 3964360 3964360 G A DAPK3 Silent p.I145I 0.25 TCGA-GN-A26C-01 19 3964824 3964824 G A DAPK3 Silent p.I76I 0.28 TCGA-GN-A26C-01 19 40221999 40221999 C T CLC 3'UTR 0.35 TCGA-GN-A26C-01 19 40396005 40396005 G A FCGBP Silent p.F2464F 0.17 TCGA-GN-A26C-01 19 4164509 4164509 C T CREB3L3 Missense_Mutation p.H196Y 0.26 deleterious(0.03) benign(0.123) TCGA-GN-A26C-01 19 43093036 43093036 G A CEACAM8 Silent p.I286I 0.33 TCGA-GN-A26C-01 19 43262317 43262317 C T PSG8 Missense_Mutation p.M182I 0.32 tolerated(1) benign(0.012) TCGA-GN-A26C-01 19 43430668 43430668 C T PSG7 Missense_Mutation p.E304K 0.50 deleterious(0.05) possibly_damaging(0.709) TCGA-GN-A26C-01 19 44570909 44570909 C T ZNF223 Missense_Mutation p.H310Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 19 45175243 45175243 A C CEACAM19 Missense_Mutation p.S14R 0.30 deleterious(0.03) benign(0.445) TCGA-GN-A26C-01 19 45207424 45207424 C T CEACAM16 Silent p.V173V 0.39 TCGA-GN-A26C-01 19 4523678 4523678 G A PLIN5 Silent p.A418A 0.27 TCGA-GN-A26C-01 19 4523691 4523691 G A PLIN5 Missense_Mutation p.A414V 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A26C-01 19 45322411 45322411 C T BCAM Missense_Mutation p.P479S 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 19 4538062 4538062 G A LRG1 Missense_Mutation p.R312C 0.25 tolerated(0.06) benign(0.004) TCGA-GN-A26C-01 19 46289884 46289884 G A DMWD Silent p.F290F 0.26 TCGA-GN-A26C-01 19 46443169 46443169 G A NOVA2 Silent p.V477V 0.46 TCGA-GN-A26C-01 19 46498721 46498721 C T CCDC61 5'Flank 0.47 TCGA-GN-A26C-01 19 47225256 47225256 G A STRN4 Silent p.F700F 0.42 TCGA-GN-A26C-01 19 47280476 47280476 G A SLC1A5 Silent p.I415I 0.28 TCGA-GN-A26C-01 19 47861215 47861215 C T DHX34 Silent p.D370D 0.38 TCGA-GN-A26C-01 19 48735002 48735002 C T CARD8 Missense_Mutation p.E153K 0.43 tolerated(0.47) benign(0) TCGA-GN-A26C-01 19 4891160 4891160 C T ARRDC5 Silent p.K309K 0.25 TCGA-GN-A26C-01 19 48981785 48981785 C T CYTH2 Missense_Mutation p.H350Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 19 4944405 4944405 C T UHRF1 RNA 0.31 TCGA-GN-A26C-01 19 49686156 49686156 C T TRPM4 Missense_Mutation p.P529S 0.36 tolerated(0.47) benign(0.002) TCGA-GN-A26C-01 19 50100028 50100028 C T PRR12 Silent p.P812P 0.38 TCGA-GN-A26C-01 19 51480807 51480807 C T KLK7 Missense_Mutation p.M249I 0.26 tolerated(1) benign(0.005) TCGA-GN-A26C-01 19 51917765 51917765 C T SIGLEC10 Silent p.K540K 0.41 TCGA-GN-A26C-01 19 52004729 52004729 C T SIGLEC12 Missense_Mutation p.E87K 0.29 tolerated(0.18) benign(0.266) TCGA-GN-A26C-01 19 52400175 52400175 G A ZNF649 Silent p.F24F 0.32 TCGA-GN-A26C-01 19 52919834 52919834 C T ZNF528 Missense_Mutation p.H577Y 0.38 tolerated(1) benign(0.002) TCGA-GN-A26C-01 19 52938380 52938380 G A ZNF534 Silent p.K76K 0.36 TCGA-GN-A26C-01 19 54844779 54844779 C T LILRA4 3'UTR 0.33 TCGA-GN-A26C-01 19 55399406 55399406 C T FCAR Missense_Mutation p.R132W 0.42 deleterious(0.02) probably_damaging(0.972) TCGA-GN-A26C-01 19 55820080 55820080 C T BRSK1 Silent p.S721S 0.41 TCGA-GN-A26C-01 19 56249498 56249498 C T NLRP9 Silent p.R81R 0.35 TCGA-GN-A26C-01 19 56363457 56363457 C T NLRP4 Missense_Mutation p.S4F 0.28 deleterious(0) probably_damaging(0.967) TCGA-GN-A26C-01 19 56459202 56459202 C T NLRP8 5'UTR 0.35 TCGA-GN-A26C-01 19 56465910 56465910 C T NLRP8 Silent p.F162F 0.39 TCGA-GN-A26C-01 19 56539348 56539348 C T NLRP5 Silent p.F583F 0.32 TCGA-GN-A26C-01 19 56701811 56701811 C T ZSCAN5B Silent p.L291L 0.33 TCGA-GN-A26C-01 19 56733161 56733161 G A ZSCAN5A Missense_Mutation p.S425F 0.30 tolerated(0.12) benign(0.005) TCGA-GN-A26C-01 19 57723875 57723875 C T ZNF264 Silent p.L470L 0.29 TCGA-GN-A26C-01 19 58101610 58101610 C T ZIK1 Missense_Mutation p.S144F 0.37 tolerated(0.28) benign(0.081) TCGA-GN-A26C-01 19 58491073 58491073 G A ZNF606 Silent p.I325I 0.37 TCGA-GN-A26C-01 19 6454349 6454349 G A SLC25A23 Silent p.F260F 0.25 TCGA-GN-A26C-01 19 6495666 6495666 G A TUBB4A Missense_Mutation p.R282W 0.20 deleterious_low_confidence(0.01) benign(0.019) TCGA-GN-A26C-01 19 6495667 6495667 G C TUBB4A Nonsense_Mutation p.Y281* 0.20 TCGA-GN-A26C-01 19 6667457 6667457 C T TNFSF14 Missense_Mutation p.G75R 0.32 tolerated(0.33) benign(0.006) TCGA-GN-A26C-01 19 6684620 6684620 G A C3 Silent p.T1357T 0.19 TCGA-GN-A26C-01 19 6713445 6713445 G A C3 Silent p.S283S 0.23 TCGA-GN-A26C-01 19 6754887 6754887 G A SH2D3A Silent p.H312H 0.27 TCGA-GN-A26C-01 19 7615202 7615202 C T PNPLA6 Silent p.P620P 0.24 TCGA-GN-A26C-01 19 7684837 7684837 G A XAB2 Silent p.F797F 0.29 TCGA-GN-A26C-01 19 7810924 7810924 C T CD209 Silent p.A76A 0.25 TCGA-GN-A26C-01 19 7964838 7964838 C T LRRC8E Silent p.S477S 0.33 TCGA-GN-A26C-01 19 8176063 8176063 C T FBN3 Silent p.R1363R 0.28 TCGA-GN-A26C-01 19 8193952 8193952 G A FBN3 Silent p.P752P 0.21 TCGA-GN-A26C-01 19 8193953 8193953 G A FBN3 Missense_Mutation p.P752L 0.21 deleterious(0.01) benign(0.424) TCGA-GN-A26C-01 19 831914 831914 C T AZU1 3'UTR 0.12 TCGA-GN-A26C-01 19 8564018 8564018 G A PRAM1 Missense_Mutation p.P225L 0.23 tolerated(0.07) benign(0.278) TCGA-GN-A26C-01 19 8564377 8564377 C T PRAM1 Silent p.K105K 0.16 TCGA-GN-A26C-01 19 9049941 9049941 C T MUC16 Missense_Mutation p.E10564K 0.29 benign(0.007) TCGA-GN-A26C-01 19 9060131 9060131 C T MUC16 Silent p.G9105G 0.24 TCGA-GN-A26C-01 19 9062015 9062015 C T MUC16 Silent p.A8477A 0.26 TCGA-GN-A26C-01 19 9065364 9065364 C T MUC16 Missense_Mutation p.R7361K 0.17 unknown(0) TCGA-GN-A26C-01 19 9066073 9066073 G A MUC16 Missense_Mutation p.P7125S 0.24 unknown(0) TCGA-GN-A26C-01 19 9072625 9072625 G A MUC16 Missense_Mutation p.P4941S 0.28 unknown(0) TCGA-GN-A26C-01 19 9074867 9074867 G A MUC16 Silent p.F4193F 0.26 TCGA-GN-A26C-01 19 9076429 9076429 G A MUC16 Missense_Mutation p.P3673S 0.29 unknown(0) TCGA-GN-A26C-01 19 9076674 9076674 G A MUC16 Missense_Mutation p.S3591F 0.30 unknown(0) TCGA-GN-A26C-01 19 9086131 9086131 G A MUC16 Missense_Mutation p.S1895F 0.26 unknown(0) TCGA-GN-A26C-01 19 9091108 9091108 G A MUC16 Missense_Mutation p.S236F 0.23 unknown(0) TCGA-GN-A26C-01 19 9091470 9091470 C T MUC16 Silent p.R115R 0.30 TCGA-GN-A26C-01 19 9362159 9362159 C T OR7E24 Missense_Mutation p.P147L 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 19 9449237 9449237 G A ZNF559 Silent p.G4G 0.30 TCGA-GN-A26C-01 19 965058 965058 C T ARID3A Silent p.T392T 0.25 TCGA-GN-A26C-01 19 9868406 9868406 G A ZNF846 Silent p.A449A 0.23 TCGA-GN-A26C-01 19 9868407 9868407 G A ZNF846 Missense_Mutation p.A449V 0.23 deleterious(0) benign(0.019) TCGA-GN-A26C-01 1 101479281 101479281 G A DPH5 Silent p.G118G 0.48 TCGA-GN-A26C-01 1 102290780 102290780 C T OLFM3 Missense_Mutation p.E132K 0.35 deleterious(0.04) benign(0.062) TCGA-GN-A26C-01 1 10316337 10316337 C T KIF1B Missense_Mutation p.P47S 0.28 tolerated(0.22) benign(0.174) TCGA-GN-A26C-01 1 10316344 10316344 C T KIF1B Missense_Mutation p.S49F 0.38 deleterious(0) possibly_damaging(0.616) TCGA-GN-A26C-01 1 103381206 103381206 G A COL11A1 Missense_Mutation p.P1266L 0.42 unknown(0) TCGA-GN-A26C-01 1 10719910 10719910 G A CASZ1 Missense_Mutation p.P397S 0.23 deleterious_low_confidence(0.02) benign(0.006) TCGA-GN-A26C-01 1 109745579 109745579 G A KIAA1324 Missense_Mutation p.G996E 0.38 tolerated(0.26) probably_damaging(1) TCGA-GN-A26C-01 1 110256073 110256073 C T GSTM5 Intron 0.44 TCGA-GN-A26C-01 1 115220613 115220613 G A AMPD1 Missense_Mutation p.P414L 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 116935540 116935540 C T ATP1A1 Missense_Mutation p.S466F 0.29 deleterious(0) possibly_damaging(0.869) TCGA-GN-A26C-01 1 117122381 117122381 G A IGSF3 Silent p.A1009A 0.16 TCGA-GN-A26C-01 1 117122404 117122404 G T IGSF3 Missense_Mutation p.Q1002K 0.20 tolerated(0.75) benign(0.009) TCGA-GN-A26C-01 1 117509892 117509892 C T PTGFRN Missense_Mutation p.L667F 0.22 tolerated(0.16) possibly_damaging(0.685) TCGA-GN-A26C-01 1 117559809 117559809 C T CD101 Silent p.P442P 0.14 TCGA-GN-A26C-01 1 119957990 119957990 C T HSD3B2 5'UTR 0.50 TCGA-GN-A26C-01 1 120277283 120277283 C T PHGDH Silent p.S179S 0.32 TCGA-GN-A26C-01 1 120337248 120337248 C T REG4 Missense_Mutation p.R157Q 0.29 tolerated(0.32) benign(0.006) TCGA-GN-A26C-01 1 12520432 12520432 G A VPS13D Missense_Mutation p.A4215T 0.39 possibly_damaging(0.87) TCGA-GN-A26C-01 1 12569134 12569134 G A VPS13D 3'UTR 0.33 TCGA-GN-A26C-01 1 12835290 12835290 C T PRAMEF12 Missense_Mutation p.R94C 0.26 tolerated(0.09) possibly_damaging(0.453) TCGA-GN-A26C-01 1 12884721 12884721 G A PRAMEF11 3'UTR 0.41 TCGA-GN-A26C-01 1 12887587 12887587 C T PRAMEF11 Silent p.R90R 0.21 TCGA-GN-A26C-01 1 12887590 12887590 C T PRAMEF11 Silent p.K89K 0.21 TCGA-GN-A26C-01 1 12939636 12939636 C T PRAMEF4 Missense_Mutation p.G389E 0.17 tolerated(0.2) probably_damaging(0.992) TCGA-GN-A26C-01 1 12939637 12939637 C T PRAMEF4 Missense_Mutation p.G389R 0.18 tolerated(0.11) probably_damaging(0.995) TCGA-GN-A26C-01 1 13036403 13036403 G A PRAMEF22 Missense_Mutation p.E159K 0.14 tolerated(0.35) benign(0.046) TCGA-GN-A26C-01 1 13743089 13743089 T C PRAMEF20 Missense_Mutation p.V93A 0.66 tolerated(0.1) benign(0.047) TCGA-GN-A26C-01 1 145533075 145533075 G A ITGA10 Missense_Mutation p.M390I 0.26 deleterious(0.03) benign(0.132) TCGA-GN-A26C-01 1 149755615 149755615 G A FCGR1A Missense_Mutation p.E37K 0.26 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 1 150429903 150429903 C T RPRD2 Missense_Mutation p.P337L 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A26C-01 1 150689631 150689631 C T HORMAD1 Missense_Mutation p.G54E 0.10 deleterious(0) probably_damaging(0.964) TCGA-GN-A26C-01 1 151006643 151006643 C T PRUNE Missense_Mutation p.A432V 0.17 tolerated(0.06) benign(0.03) TCGA-GN-A26C-01 1 151110496 151110496 G A SEMA6C Silent p.L211L 0.28 TCGA-GN-A26C-01 1 151131671 151131671 G A TNFAIP8L2 Silent p.Q166Q 0.31 TCGA-GN-A26C-01 1 152128866 152128866 C T RPTN Missense_Mutation p.D237N 0.14 tolerated(0.24) benign(0.005) TCGA-GN-A26C-01 1 152188457 152188457 C T HRNR Missense_Mutation p.G1883D 0.04 unknown(0) TCGA-GN-A26C-01 1 152193617 152193617 C T HRNR Missense_Mutation p.R163K 0.31 benign(0.27) TCGA-GN-A26C-01 1 152277644 152277644 G A FLG Missense_Mutation p.R3240C 0.30 unknown(0) TCGA-GN-A26C-01 1 152281024 152281024 C T FLG Missense_Mutation p.G2113E 0.18 probably_damaging(0.931) TCGA-GN-A26C-01 1 152281751 152281751 C T FLG Missense_Mutation p.E1871K 0.33 benign(0.292) TCGA-GN-A26C-01 1 152324960 152324960 C T FLG2 Missense_Mutation p.G1768R 0.37 possibly_damaging(0.517) TCGA-GN-A26C-01 1 152382066 152382066 G A CRNN 3'UTR 0.13 TCGA-GN-A26C-01 1 152484024 152484024 A - LCE5A Frame_Shift_Del p.Q5Rfs*65 0.21 TCGA-GN-A26C-01 1 152648591 152648591 C T LCE2C Missense_Mutation p.P34S 0.16 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A26C-01 1 152883960 152883960 G A IVL Missense_Mutation p.G563R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-GN-A26C-01 1 153999992 153999992 G A NUP210L Missense_Mutation p.H1313Y 0.26 tolerated(0.34) benign(0.001) TCGA-GN-A26C-01 1 154932030 154932030 G A PYGO2 Missense_Mutation p.P149L 0.21 tolerated(0.16) possibly_damaging(0.908) TCGA-GN-A26C-01 1 155723072 155723072 G A GON4L Missense_Mutation p.P1922L 0.24 tolerated_low_confidence(0.55) possibly_damaging(0.851) TCGA-GN-A26C-01 1 155723073 155723073 G A GON4L Missense_Mutation p.P1922S 0.24 tolerated_low_confidence(0.5) possibly_damaging(0.803) TCGA-GN-A26C-01 1 155792092 155792092 G A GON4L Silent p.V291V 0.16 TCGA-GN-A26C-01 1 156108270 156108270 C T LMNA Intron 0.24 TCGA-GN-A26C-01 1 156146734 156146734 C T SEMA4A Silent p.T744T 0.19 TCGA-GN-A26C-01 1 156228802 156228802 G A SMG5 Silent p.F812F 0.28 TCGA-GN-A26C-01 1 156264212 156264212 C G C1orf85 Missense_Mutation p.G175R 0.11 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 1 1563427 1563427 C T MIB2 Missense_Mutation p.S685F 0.29 tolerated(0.1) benign(0.005) TCGA-GN-A26C-01 1 156437425 156437425 G A MEF2D 3'UTR 0.15 TCGA-GN-A26C-01 1 156622570 156622570 C T BCAN Missense_Mutation p.P610S 0.24 tolerated(0.12) benign(0.015) TCGA-GN-A26C-01 1 156622571 156622571 C T BCAN Missense_Mutation p.P610L 0.24 tolerated(0.06) benign(0.008) TCGA-GN-A26C-01 1 156955917 156955917 G A ARHGEF11 Silent p.S27S 0.21 TCGA-GN-A26C-01 1 158064487 158064487 C T KIRREL Silent p.S617S 0.29 TCGA-GN-A26C-01 1 158263277 158263277 C T CD1C 3'UTR 0.27 TCGA-GN-A26C-01 1 158298751 158298751 G A CD1B Missense_Mutation p.L314F 0.25 deleterious(0) benign(0.157) TCGA-GN-A26C-01 1 158449913 158449913 C T OR10R2 Silent p.F82F 0.17 TCGA-GN-A26C-01 1 158449955 158449955 C T OR10R2 Silent p.V96V 0.18 TCGA-GN-A26C-01 1 158615343 158615343 G A SPTA1 Missense_Mutation p.S1313L 0.17 deleterious(0.04) benign(0.038) TCGA-GN-A26C-01 1 158644424 158644424 C T SPTA1 Nonsense_Mutation p.W385* 0.21 TCGA-GN-A26C-01 1 158670041 158670041 G A OR6K2 Silent p.I134I 0.15 TCGA-GN-A26C-01 1 158687584 158687584 C T OR6K3 Missense_Mutation p.E108K 0.15 deleterious(0) benign(0) TCGA-GN-A26C-01 1 15874796 15874796 C T DNAJC16 Missense_Mutation p.S299L 0.32 tolerated(0.19) benign(0.002) TCGA-GN-A26C-01 1 159176211 159176211 C T DARC Missense_Mutation p.H330Y 0.29 tolerated(0.12) possibly_damaging(0.781) TCGA-GN-A26C-01 1 159272205 159272205 C T FCER1A Silent p.F17F 0.27 TCGA-GN-A26C-01 1 159273877 159273877 A T FCER1A Missense_Mutation p.N79I 0.30 deleterious(0.01) benign(0.101) TCGA-GN-A26C-01 1 159410066 159410066 C T OR10J1 Missense_Mutation p.S173F 0.34 tolerated(0.71) probably_damaging(0.918) TCGA-GN-A26C-01 1 159505126 159505126 G A OR10J5 Silent p.I224I 0.14 TCGA-GN-A26C-01 1 15978366 15978366 C T DDI2 Missense_Mutation p.L387F 0.29 deleterious(0.03) benign(0.005) TCGA-GN-A26C-01 1 159901688 159901688 C T IGSF9 Missense_Mutation p.E426K 0.15 tolerated(0.51) benign(0.049) TCGA-GN-A26C-01 1 159922179 159922179 G A SLAMF9 Silent p.F179F 0.13 TCGA-GN-A26C-01 1 160105705 160105705 C T ATP1A2 Silent p.F787F 0.28 TCGA-GN-A26C-01 1 160143373 160143373 G A ATP1A4 Silent p.V619V 0.28 TCGA-GN-A26C-01 1 160466008 160466008 G A SLAMF6 Silent p.I75I 0.28 TCGA-GN-A26C-01 1 161298251 161298251 C T SDHC Missense_Mutation p.S48L 0.12 tolerated(1) benign(0.017) TCGA-GN-A26C-01 1 161487906 161487906 C T FCGR2A Missense_Mutation p.P308S 0.16 tolerated_low_confidence(0.29) benign(0.002) TCGA-GN-A26C-01 1 161682872 161682872 C T FCRLA Intron 0.14 TCGA-GN-A26C-01 1 163043410 163043410 G A RGS4 Missense_Mutation p.E223K 0.33 deleterious(0) probably_damaging(0.98) TCGA-GN-A26C-01 1 16342200 16342200 C T HSPB7 Missense_Mutation p.E130K 0.18 deleterious(0.01) benign(0.039) TCGA-GN-A26C-01 1 16355751 16355751 G A CLCNKA Missense_Mutation p.R395Q 0.24 tolerated(0.95) benign(0.001) TCGA-GN-A26C-01 1 16355752 16355752 G T CLCNKA Silent p.R395R 0.25 TCGA-GN-A26C-01 1 167095812 167095812 G A DUSP27 Missense_Mutation p.E482K 0.33 deleterious(0.05) benign(0.107) TCGA-GN-A26C-01 1 167097730 167097730 G A DUSP27 Missense_Mutation p.R1121Q 0.36 deleterious(0.04) possibly_damaging(0.55) TCGA-GN-A26C-01 1 167097732 167097732 A T DUSP27 Nonsense_Mutation p.R1122* 0.37 TCGA-GN-A26C-01 1 167343503 167343503 C T POU2F1 Silent p.I187I 0.19 TCGA-GN-A26C-01 1 167780031 167780031 C T ADCY10 Silent p.L1534L 0.34 TCGA-GN-A26C-01 1 167815065 167815065 C T ADCY10 Missense_Mutation p.E915K 0.32 tolerated(0.31) benign(0.142) TCGA-GN-A26C-01 1 168698194 168698194 C T DPT Nonsense_Mutation p.W73* 0.32 TCGA-GN-A26C-01 1 169484697 169484697 G A F5 Silent p.S2171S 0.19 TCGA-GN-A26C-01 1 169847945 169847945 G A SCYL3 Missense_Mutation p.R61C 0.13 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 171251278 171251278 G A FMO1 Missense_Mutation p.G330E 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 171621368 171621368 C T MYOC Silent p.R128R 0.34 TCGA-GN-A26C-01 1 17263258 17263258 C T CROCC Silent p.A361A 0.27 TCGA-GN-A26C-01 1 173155778 173155778 C T TNFSF4 Silent p.L143L 0.10 TCGA-GN-A26C-01 1 173486830 173486830 G A SLC9C2 Missense_Mutation p.S918F 0.11 deleterious(0.04) possibly_damaging(0.641) TCGA-GN-A26C-01 1 173567128 173567128 G A SLC9C2 Missense_Mutation p.S91L 0.44 tolerated(0.38) possibly_damaging(0.519) TCGA-GN-A26C-01 1 175066590 175066590 G A TNN Silent p.V542V 0.20 TCGA-GN-A26C-01 1 175304905 175304905 G A TNR Silent p.F1191F 0.10 TCGA-GN-A26C-01 1 175365882 175365882 C T TNR Nonsense_Mutation p.W346* 0.28 TCGA-GN-A26C-01 1 176681030 176681030 C T PAPPA2 Silent p.P1237P 0.43 TCGA-GN-A26C-01 1 176992672 176992672 C T ASTN1 Missense_Mutation p.D436N 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A26C-01 1 177133714 177133714 C T ASTN1 Silent p.L33L 0.36 TCGA-GN-A26C-01 1 177908853 177908853 G A SEC16B Silent p.A729A 0.40 TCGA-GN-A26C-01 1 179079431 179079431 G A ABL2 Missense_Mutation p.S604F 0.33 tolerated(0.28) benign(0.309) TCGA-GN-A26C-01 1 179604947 179604947 C T TDRD5 Missense_Mutation p.S482F 0.09 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 179815807 179815807 G A TOR1AIP2 Missense_Mutation p.S271F 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-GN-A26C-01 1 180151427 180151427 G A QSOX1 Missense_Mutation p.R242Q 0.32 deleterious(0.01) possibly_damaging(0.844) TCGA-GN-A26C-01 1 180151428 180151428 G A QSOX1 Silent p.R242R 0.32 TCGA-GN-A26C-01 1 180804099 180804099 G A XPR1 Missense_Mutation p.M408I 0.28 tolerated(0.06) benign(0.026) TCGA-GN-A26C-01 1 180804100 180804100 G A XPR1 Missense_Mutation p.D409N 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 180849408 180849408 C T XPR1 Silent p.L669L 0.35 TCGA-GN-A26C-01 1 181754860 181754860 C T CACNA1E Silent p.P1897P 0.29 TCGA-GN-A26C-01 1 182026917 182026917 C T ZNF648 Missense_Mutation p.E77K 0.29 tolerated(0.46) benign(0.002) TCGA-GN-A26C-01 1 182873548 182873548 C T SHCBP1L Missense_Mutation p.E452K 0.09 deleterious(0.01) possibly_damaging(0.851) TCGA-GN-A26C-01 1 182909608 182909608 G A SHCBP1L Missense_Mutation p.S209F 0.11 deleterious(0) possibly_damaging(0.898) TCGA-GN-A26C-01 1 183816876 183816876 C T RGL1 Silent p.S140S 0.32 TCGA-GN-A26C-01 1 183938490 183938490 C T COLGALT2 Missense_Mutation p.D249N 0.11 tolerated(0.33) benign(0.001) TCGA-GN-A26C-01 1 184764157 184764157 C T FAM129A Missense_Mutation p.G914E 0.28 tolerated_low_confidence(1) benign(0.01) TCGA-GN-A26C-01 1 184764460 184764460 C T FAM129A Missense_Mutation p.G813E 0.29 tolerated_low_confidence(1) benign(0.003) TCGA-GN-A26C-01 1 185987463 185987463 G A HMCN1 Missense_Mutation p.E1817K 0.24 possibly_damaging(0.651) TCGA-GN-A26C-01 1 19611521 19611521 G A AKR7A3 Missense_Mutation p.P199S 0.14 deleterious(0.02) probably_damaging(0.977) TCGA-GN-A26C-01 1 196794625 196794625 C T CFHR1 Missense_Mutation p.P26L 0.23 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 1 196918726 196918726 G A CFHR2 Nonsense_Mutation p.W67* 0.30 TCGA-GN-A26C-01 1 196977645 196977645 G A CFHR5 Missense_Mutation p.M514I 0.37 tolerated(0.07) probably_damaging(0.972) TCGA-GN-A26C-01 1 197026215 197026215 C T F13B Missense_Mutation p.G367S 0.35 tolerated(0.14) probably_damaging(0.999) TCGA-GN-A26C-01 1 197390134 197390134 C T CRB1 Silent p.I392I 0.20 TCGA-GN-A26C-01 1 197889116 197889116 C T LHX9 Silent p.L63L 0.34 TCGA-GN-A26C-01 1 198665949 198665949 C T PTPRC Missense_Mutation p.S70L 0.14 tolerated_low_confidence(0.06) benign(0.016) TCGA-GN-A26C-01 1 201012548 201012548 C T CACNA1S Missense_Mutation p.E1637K 0.24 tolerated_low_confidence(0.09) benign(0.066) TCGA-GN-A26C-01 1 201453853 201453853 G A CSRP1 Silent p.V190V 0.31 TCGA-GN-A26C-01 1 202123316 202123316 C T PTPN7 Missense_Mutation p.E307K 0.33 tolerated(0.08) probably_damaging(0.985) TCGA-GN-A26C-01 1 203033126 203033126 C T PPFIA4 Silent p.F509F 0.22 TCGA-GN-A26C-01 1 203140699 203140699 G A MYBPH Missense_Mutation p.P202L 0.30 deleterious(0.01) probably_damaging(0.937) TCGA-GN-A26C-01 1 203682370 203682370 C T ATP2B4 Silent p.T763T 0.14 TCGA-GN-A26C-01 1 204172067 204172067 C T GOLT1A Missense_Mutation p.G25E 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 204228606 204228606 C T PLEKHA6 Missense_Mutation p.G263R 0.35 tolerated(0.26) benign(0.005) TCGA-GN-A26C-01 1 205884532 205884532 C T SLC26A9 Missense_Mutation p.E777K 0.16 deleterious_low_confidence(0.01) benign(0.285) TCGA-GN-A26C-01 1 206328852 206328852 G A CTSE Missense_Mutation p.D307N 0.15 tolerated(0.79) benign(0.002) TCGA-GN-A26C-01 1 206767083 206767083 G A EIF2D Silent p.I523I 0.26 TCGA-GN-A26C-01 1 207139141 207139141 G A FCAMR Missense_Mutation p.P78S 0.16 tolerated(0.13) benign(0.046) TCGA-GN-A26C-01 1 207198353 207198353 C T C1orf116 Silent p.L54L 0.30 TCGA-GN-A26C-01 1 207242814 207242814 C G PFKFB2 Missense_Mutation p.P345A 0.10 probably_damaging(0.994) TCGA-GN-A26C-01 1 207890927 207890927 G A CR1L Silent p.G511G 0.23 TCGA-GN-A26C-01 1 2080359 2080359 C T PRKCZ Missense_Mutation p.S228L 0.28 tolerated(0.33) benign(0.001) TCGA-GN-A26C-01 1 209948796 209948796 G A TRAF3IP3 Missense_Mutation p.E293K 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-GN-A26C-01 1 209950737 209950737 G A TRAF3IP3 Missense_Mutation p.R365Q 0.19 tolerated(0.42) benign(0.01) TCGA-GN-A26C-01 1 211192179 211192179 C T KCNH1 Silent p.G326G 0.15 TCGA-GN-A26C-01 1 214537942 214537942 G A PTPN14 Silent p.P1116P 0.32 TCGA-GN-A26C-01 1 216497628 216497628 C T USH2A Missense_Mutation p.E404K 0.30 benign(0.005) TCGA-GN-A26C-01 1 220197740 220197740 G A EPRS Missense_Mutation p.S270L 0.31 deleterious(0.01) possibly_damaging(0.449) TCGA-GN-A26C-01 1 220970134 220970134 G A MARC1 Missense_Mutation p.R200Q 0.43 tolerated(0.61) benign(0.017) TCGA-GN-A26C-01 1 22155968 22155968 A T HSPG2 Missense_Mutation p.L3967Q 0.25 probably_damaging(0.969) TCGA-GN-A26C-01 1 22170655 22170655 G A HSPG2 Missense_Mutation p.P2868S 0.22 probably_damaging(1) TCGA-GN-A26C-01 1 22181372 22181372 G A HSPG2 Silent p.A2034A 0.26 TCGA-GN-A26C-01 1 222716994 222716994 G A HHIPL2 Missense_Mutation p.R287C 0.13 deleterious(0.03) probably_damaging(0.939) TCGA-GN-A26C-01 1 222904715 222904715 C T BROX Missense_Mutation p.P336S 0.08 deleterious(0.05) probably_damaging(0.981) TCGA-GN-A26C-01 1 224345355 224345355 C T FBXO28 Silent p.S338S 0.13 TCGA-GN-A26C-01 1 227152760 227152760 C T ADCK3 Silent p.F79F 0.29 TCGA-GN-A26C-01 1 228003501 228003501 C T PRSS38 Silent p.P28P 0.15 TCGA-GN-A26C-01 1 228295420 228295420 C T MRPL55 Silent p.Q95Q 0.32 TCGA-GN-A26C-01 1 228509535 228509535 C T OBSCN Missense_Mutation p.S5955F 0.09 benign(0.104) TCGA-GN-A26C-01 1 228554256 228554256 G A OBSCN Silent p.L7401L 0.16 TCGA-GN-A26C-01 1 229462801 229462801 A T CCSAP Intron 0.35 TCGA-GN-A26C-01 1 230468602 230468602 G A PGBD5 Missense_Mutation p.P352S 0.19 deleterious(0.03) benign(0.093) TCGA-GN-A26C-01 1 23233402 23233402 G A EPHB2 Missense_Mutation p.M697I 0.28 deleterious(0) probably_damaging(0.95) TCGA-GN-A26C-01 1 23234541 23234541 C T EPHB2 Silent p.H745H 0.21 TCGA-GN-A26C-01 1 232575022 232575022 G A SIPA1L2 Missense_Mutation p.S1288F 0.11 deleterious(0.02) benign(0.011) TCGA-GN-A26C-01 1 232942939 232942939 G C MAP10 Missense_Mutation p.V724L 0.11 tolerated(0.5) benign(0.165) TCGA-GN-A26C-01 1 233394590 233394590 C T PCNXL2 Missense_Mutation p.D340N 0.12 tolerated_low_confidence(0.23) benign(0.051) TCGA-GN-A26C-01 1 233514903 233514903 G A MLK4 Silent p.K717K 0.13 TCGA-GN-A26C-01 1 234367487 234367487 G A SLC35F3 Missense_Mutation p.R203K 0.26 tolerated(0.12) benign(0.311) TCGA-GN-A26C-01 1 235324583 235324583 C T RBM34 5'UTR 0.27 TCGA-GN-A26C-01 1 235600750 235600750 C T TBCE Silent p.I359I 0.34 TCGA-GN-A26C-01 1 236645877 236645877 G A EDARADD Silent p.E192E 0.29 TCGA-GN-A26C-01 1 23760133 23760133 C T ASAP3 Missense_Mutation p.E669K 0.23 tolerated(0.18) possibly_damaging(0.724) TCGA-GN-A26C-01 1 238090370 238090370 G A RP11-193H5.1 RNA 0.11 TCGA-GN-A26C-01 1 240255920 240255920 G A FMN2 Missense_Mutation p.D171N 0.25 unknown(0) TCGA-GN-A26C-01 1 241262042 241262042 C T RGS7 Silent p.R33R 0.30 TCGA-GN-A26C-01 1 242271057 242271057 C T PLD5 Nonsense_Mutation p.W385* 0.26 TCGA-GN-A26C-01 1 243437849 243437849 C T SDCCAG8 Missense_Mutation p.S104L 0.10 tolerated(0.19) benign(0.287) TCGA-GN-A26C-01 1 24410969 24410969 G A MYOM3 Silent p.I653I 0.19 TCGA-GN-A26C-01 1 246810883 246810883 C T CNST Silent p.L460L 0.26 TCGA-GN-A26C-01 1 247151033 247151033 G A ZNF695 Missense_Mutation p.H262Y 0.26 tolerated(0.06) benign(0.038) TCGA-GN-A26C-01 1 247695301 247695301 C T OR2C3 Silent p.G171G 0.43 TCGA-GN-A26C-01 1 247769355 247769355 C T OR2G3 Silent p.S156S 0.26 TCGA-GN-A26C-01 1 247836345 247836345 C T OR13G1 5'UTR 0.22 TCGA-GN-A26C-01 1 248004887 248004887 G A OR11L1 Silent p.F104F 0.29 TCGA-GN-A26C-01 1 248020688 248020688 C T TRIM58 Missense_Mutation p.S47L 0.14 tolerated(0.47) benign(0.072) TCGA-GN-A26C-01 1 248039598 248039598 C T TRIM58 Missense_Mutation p.S423L 0.29 deleterious(0) probably_damaging(0.987) TCGA-GN-A26C-01 1 248308965 248308965 G A OR2M5 Silent p.R172R 0.11 TCGA-GN-A26C-01 1 248402872 248402872 C T OR2M4 Silent p.I214I 0.39 TCGA-GN-A26C-01 1 248512192 248512192 G A OR14C36 Missense_Mutation p.G39E 0.32 deleterious(0.01) possibly_damaging(0.88) TCGA-GN-A26C-01 1 248512475 248512475 C T OR14C36 Silent p.I133I 0.31 TCGA-GN-A26C-01 1 248685667 248685667 C T OR2G6 Silent p.T240T 0.14 TCGA-GN-A26C-01 1 248814116 248814116 G A OR2T27 Missense_Mutation p.P24S 0.10 tolerated(0.49) benign(0.004) TCGA-GN-A26C-01 1 24932131 24932131 G A NCMAP Missense_Mutation p.G68S 0.25 tolerated(1) benign(0.003) TCGA-GN-A26C-01 1 26189515 26189515 C T PAQR7 Silent p.G272G 0.25 TCGA-GN-A26C-01 1 26189516 26189516 C T PAQR7 Missense_Mutation p.G272E 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 26511561 26511561 G A CNKSR1 Missense_Mutation p.D398N 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-GN-A26C-01 1 26873424 26873424 C T RPS6KA1 Missense_Mutation p.P68S 0.28 deleterious(0.03) benign(0.348) TCGA-GN-A26C-01 1 28599131 28599131 G A SESN2 Missense_Mutation p.E193K 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 1 2938827 2938827 C T ACTRT2 Missense_Mutation p.L193F 0.29 tolerated(0.08) probably_damaging(0.997) TCGA-GN-A26C-01 1 29630521 29630521 G A PTPRU Silent p.K887K 0.36 TCGA-GN-A26C-01 1 32120952 32120952 G A COL16A1 Missense_Mutation p.S1418L 0.20 unknown(0) TCGA-GN-A26C-01 1 32193193 32193193 G A BAI2 Missense_Mutation p.P1529L 0.29 deleterious(0) probably_damaging(0.946) TCGA-GN-A26C-01 1 32207011 32207011 C T BAI2 Missense_Mutation p.R586H 0.31 deleterious(0) probably_damaging(0.964) TCGA-GN-A26C-01 1 32745728 32745728 G A LCK Missense_Mutation p.G415E 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 33359215 33359215 G A HPCA Missense_Mutation p.D157N 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A26C-01 1 33990616 33990616 G A CSMD2 Missense_Mutation p.S3277F 0.31 tolerated(0.08) benign(0.012) TCGA-GN-A26C-01 1 3417559 3417559 G A MEGF6 Missense_Mutation p.P849L 0.27 deleterious(0.03) possibly_damaging(0.857) TCGA-GN-A26C-01 1 34190148 34190148 G A CSMD2 Silent p.F911F 0.24 TCGA-GN-A26C-01 1 34190950 34190950 T A CSMD2 Missense_Mutation p.T859S 0.31 tolerated(1) benign(0.006) TCGA-GN-A26C-01 1 36552870 36552870 G A TEKT2 Silent p.E271E 0.16 TCGA-GN-A26C-01 1 36558978 36558978 G C ADPRHL2 Missense_Mutation p.Q361H 0.25 tolerated_low_confidence(0.62) benign(0) TCGA-GN-A26C-01 1 36931934 36931934 C T CSF3R 3'UTR 0.34 TCGA-GN-A26C-01 1 36932837 36932837 C T CSF3R Missense_Mutation p.M678I 0.40 tolerated(0.07) benign(0.012) TCGA-GN-A26C-01 1 36937222 36937222 C T CSF3R Missense_Mutation p.G366E 0.24 deleterious(0) probably_damaging(0.969) TCGA-GN-A26C-01 1 38288307 38288307 G A MTF1 Missense_Mutation p.S418F 0.16 deleterious(0.01) possibly_damaging(0.757) TCGA-GN-A26C-01 1 38288311 38288311 A C MTF1 Missense_Mutation p.L417V 0.16 tolerated(0.27) probably_damaging(0.984) TCGA-GN-A26C-01 1 39800435 39800435 G A MACF1 Intron 0.19 TCGA-GN-A26C-01 1 39905145 39905145 C T MACF1 Silent p.I4081I 0.21 TCGA-GN-A26C-01 1 39908123 39908123 C T MACF1 Nonsense_Mutation p.Q4271* 0.19 TCGA-GN-A26C-01 1 43076720 43076720 A G CCDC30 Silent p.E485E 0.25 TCGA-GN-A26C-01 1 43124996 43124996 G A PPIH Intron 0.31 TCGA-GN-A26C-01 1 43203944 43203944 C T CLDN19 Silent p.L143L 0.17 TCGA-GN-A26C-01 1 43212485 43212485 G A LEPRE1 3'UTR 0.21 TCGA-GN-A26C-01 1 43896733 43896733 C T SZT2 Missense_Mutation p.P1573S 0.12 tolerated(0.59) probably_damaging(0.922) TCGA-GN-A26C-01 1 44360113 44360113 C T ST3GAL3 Missense_Mutation p.R190W 0.31 tolerated(0.17) probably_damaging(0.944) TCGA-GN-A26C-01 1 44442945 44442945 C T ATP6V0B Intron 0.13 TCGA-GN-A26C-01 1 44451195 44451195 C T B4GALT2 Silent p.S319S 0.26 TCGA-GN-A26C-01 1 44463298 44463298 G A SLC6A9 Silent p.V680V 0.25 TCGA-GN-A26C-01 1 45220441 45220441 C T KIF2C Missense_Mutation p.P228L 0.25 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 1 46488611 46488611 C T MAST2 Missense_Mutation p.P485S 0.37 tolerated_low_confidence(0.3) possibly_damaging(0.642) TCGA-GN-A26C-01 1 47398684 47398684 G A CYP4A11 Missense_Mutation p.H420Y 0.33 deleterious(0.04) benign(0.169) TCGA-GN-A26C-01 1 47607897 47607897 G A CYP4A22 Missense_Mutation p.R167Q 0.27 tolerated(0.69) benign(0.011) TCGA-GN-A26C-01 1 47716973 47716973 C T STIL Silent p.G1234G 0.33 TCGA-GN-A26C-01 1 4834602 4834602 C T AJAP1 3'UTR 0.41 TCGA-GN-A26C-01 1 48764307 48764307 G A SPATA6 3'UTR 0.33 TCGA-GN-A26C-01 1 51754542 51754542 C T TTC39A Missense_Mutation p.E531K 0.21 tolerated(0.1) possibly_damaging(0.736) TCGA-GN-A26C-01 1 53480614 53480614 G A SCP2 Silent p.K378K 0.22 TCGA-GN-A26C-01 1 53684567 53684567 G A C1orf123 Missense_Mutation p.S40L 0.20 deleterious(0) benign(0.249) TCGA-GN-A26C-01 1 53972268 53972268 G A GLIS1 3'UTR 0.18 TCGA-GN-A26C-01 1 54678204 54678204 C T MRPL37 Missense_Mutation p.P288L 0.21 tolerated(0.08) benign(0.042) TCGA-GN-A26C-01 1 55060346 55060346 A T ACOT11 Missense_Mutation p.N197Y 0.17 deleterious(0.01) benign(0.015) TCGA-GN-A26C-01 1 55337101 55337101 G A DHCR24 Silent p.F266F 0.09 TCGA-GN-A26C-01 1 56977725 56977725 G A PPAP2B Missense_Mutation p.R245C 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 1 56990026 56990026 G A PPAP2B Silent p.F166F 0.30 TCGA-GN-A26C-01 1 57159464 57159464 G A PRKAA2 Missense_Mutation p.E168K 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-GN-A26C-01 1 57351711 57351711 G A C8A Missense_Mutation p.D323N 0.34 deleterious(0.03) possibly_damaging(0.776) TCGA-GN-A26C-01 1 61553830 61553830 C T NFIA Missense_Mutation p.H58Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 1 6195349 6195349 G A CHD5 Silent p.F937F 0.25 TCGA-GN-A26C-01 1 62190821 62190821 C T TM2D1 Missense_Mutation p.G53E 0.21 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-GN-A26C-01 1 62340940 62340940 C T INADL Missense_Mutation p.S954F 0.27 deleterious(0.03) possibly_damaging(0.568) TCGA-GN-A26C-01 1 62677136 62677136 G A L1TD1 3'UTR 0.27 TCGA-GN-A26C-01 1 62732423 62732423 G A KANK4 Missense_Mutation p.T767I 0.25 deleterious(0.03) benign(0) TCGA-GN-A26C-01 1 63044523 63044523 A C DOCK7 Silent p.P662P 0.17 TCGA-GN-A26C-01 1 63044524 63044524 G A DOCK7 Missense_Mutation p.P662L 0.16 tolerated(0.08) benign(0.029) TCGA-GN-A26C-01 1 63063322 63063322 C A ANGPTL3 Missense_Mutation p.L29I 0.39 tolerated(0.54) benign(0) TCGA-GN-A26C-01 1 64605890 64605890 G A ROR1 Missense_Mutation p.E237K 0.21 tolerated(0.32) benign(0.038) TCGA-GN-A26C-01 1 6615455 6615455 C T TAS1R1 Silent p.L8L 0.32 TCGA-GN-A26C-01 1 75037778 75037778 C T C1orf173 Missense_Mutation p.E1206K 0.22 tolerated(0.15) benign(0.011) TCGA-GN-A26C-01 1 78392407 78392407 G A NEXN Missense_Mutation p.E232K 0.21 deleterious(0.03) benign(0.024) TCGA-GN-A26C-01 1 78959146 78959146 G A PTGFR Missense_Mutation p.G240S 0.32 tolerated(0.21) possibly_damaging(0.721) TCGA-GN-A26C-01 1 82416777 82416777 C T LPHN2 Missense_Mutation p.S523L 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A26C-01 1 82418681 82418681 G A LPHN2 Intron 0.23 TCGA-GN-A26C-01 1 86889842 86889842 C T CLCA2 5'UTR 0.50 TCGA-GN-A26C-01 1 86959213 86959213 G A CLCA1 Silent p.Q537Q 0.19 TCGA-GN-A26C-01 1 892520 892520 C T NOC2L Missense_Mutation p.E105K 0.22 deleterious(0.01) benign(0.423) TCGA-GN-A26C-01 1 892521 892521 C T NOC2L Silent p.E104E 0.21 TCGA-GN-A26C-01 1 89279410 89279410 G A PKN2 Missense_Mutation p.R758K 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A26C-01 1 89730507 89730507 C T GBP5 Missense_Mutation p.M337I 0.26 deleterious(0) probably_damaging(0.944) TCGA-GN-A26C-01 1 906161 906161 C T PLEKHN1 Intron 0.28 TCGA-GN-A26C-01 1 9324785 9324785 C T H6PD Silent p.L745L 0.24 TCGA-GN-A26C-01 1 93720073 93720073 C T CCDC18 Nonsense_Mutation p.R1135* 0.43 TCGA-GN-A26C-01 1 95007189 95007189 C T F3 Missense_Mutation p.E2K 0.35 tolerated_low_confidence(0.2) benign(0.001) TCGA-GN-A26C-01 1 95712368 95712368 T G TMEM56-RWDD3 3'Flank 0.53 TCGA-GN-A26C-01 1 9713722 9713722 C T C1orf200 3'UTR 0.39 TCGA-GN-A26C-01 20 10030492 10030492 G A ANKEF1 Silent p.K425K 0.32 TCGA-GN-A26C-01 20 10393417 10393417 G A MKKS Missense_Mutation p.S249F 0.21 deleterious(0) probably_damaging(0.972) TCGA-GN-A26C-01 20 10653563 10653563 G A JAG1 Missense_Mutation p.A58V 0.34 tolerated(0.5) benign(0.077) TCGA-GN-A26C-01 20 13251208 13251208 G A ISM1 Missense_Mutation p.E66K 0.24 tolerated(0.2) benign(0.003) TCGA-GN-A26C-01 20 14307645 14307645 G A FLRT3 Missense_Mutation p.P170S 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 20 1629872 1629872 G A SIRPG Missense_Mutation p.P86S 0.29 deleterious(0.03) benign(0.326) TCGA-GN-A26C-01 20 17446151 17446151 C T PCSK2 Silent p.T461T 0.19 TCGA-GN-A26C-01 20 17596138 17596138 C T RRBP1 Missense_Mutation p.E897K 0.23 deleterious(0.01) possibly_damaging(0.486) TCGA-GN-A26C-01 20 17950806 17950806 C T MGME1 Missense_Mutation p.P102S 0.22 tolerated(0.05) possibly_damaging(0.666) TCGA-GN-A26C-01 20 18163816 18163816 C T CSRP2BP Missense_Mutation p.R620C 0.33 tolerated(0.18) benign(0.001) TCGA-GN-A26C-01 20 19981499 19981499 C T RIN2 Silent p.F918F 0.18 TCGA-GN-A26C-01 20 20033087 20033087 G A CRNKL1 Missense_Mutation p.S128F 0.24 deleterious_low_confidence(0) benign(0.022) TCGA-GN-A26C-01 20 20484046 20484046 G A RALGAPA2 Silent p.F1719F 0.31 TCGA-GN-A26C-01 20 20501698 20501698 C T RALGAPA2 Missense_Mutation p.S1316N 0.19 tolerated(0.08) benign(0.005) TCGA-GN-A26C-01 20 20592019 20592019 C T RALGAPA2 Silent p.K580K 0.25 TCGA-GN-A26C-01 20 22563420 22563420 G A FOXA2 Missense_Mutation p.P154S 0.23 tolerated(0.2) benign(0.262) TCGA-GN-A26C-01 20 22563421 22563421 G A FOXA2 Silent p.D153D 0.23 TCGA-GN-A26C-01 20 23017048 23017048 C T SSTR4 Missense_Mutation p.L310F 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 20 2320599 2320599 G A TGM3 Missense_Mutation p.G634R 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 20 2380222 2380222 G A TGM6 Missense_Mutation p.D230N 0.21 deleterious(0.02) probably_damaging(0.97) TCGA-GN-A26C-01 20 24523919 24523919 G A SYNDIG1 Silent p.L62L 0.32 TCGA-GN-A26C-01 20 24524006 24524006 C T SYNDIG1 Silent p.I91I 0.23 TCGA-GN-A26C-01 20 2464423 2464423 G A ZNF343 Missense_Mutation p.T395I 0.21 tolerated(0.14) benign(0.029) TCGA-GN-A26C-01 20 25656527 25656527 C T ZNF337 Missense_Mutation p.G466E 0.18 deleterious(0.02) probably_damaging(0.986) TCGA-GN-A26C-01 20 25656528 25656528 C T ZNF337 Missense_Mutation p.G466R 0.18 deleterious(0.04) probably_damaging(0.991) TCGA-GN-A26C-01 20 2775066 2775066 C T CPXM1 Missense_Mutation p.D659N 0.26 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 20 29891016 29891016 C T DEFB116 Silent p.%3D 0.26 TCGA-GN-A26C-01 20 30411356 30411356 C T MYLK2 Silent p.F283F 0.24 TCGA-GN-A26C-01 20 30671694 30671694 C T HCK Intron 0.15 TCGA-GN-A26C-01 20 30816069 30816069 T G POFUT1 Missense_Mutation p.F182L 0.23 deleterious(0.01) benign(0.069) TCGA-GN-A26C-01 20 3090996 3090996 G A UBOX5 Intron 0.22 TCGA-GN-A26C-01 20 3128617 3128617 T C FASTKD5 Missense_Mutation p.H367R 0.17 tolerated(0.46) benign(0.105) TCGA-GN-A26C-01 20 31386272 31386272 C T DNMT3B Silent p.F499F 0.16 TCGA-GN-A26C-01 20 3209569 3209569 G A SLC4A11 Missense_Mutation p.H746Y 0.29 deleterious(0.01) probably_damaging(0.943) TCGA-GN-A26C-01 20 32328773 32328773 C T ZNF341 Missense_Mutation p.P33S 0.21 deleterious(0.02) probably_damaging(0.957) TCGA-GN-A26C-01 20 32332928 32332928 C T ZNF341 Silent p.L54L 0.20 TCGA-GN-A26C-01 20 3277588 3277588 G A C20orf194 Silent p.S646S 0.23 TCGA-GN-A26C-01 20 33328277 33328277 G A NCOA6 Missense_Mutation p.S1928F 0.26 possibly_damaging(0.898) TCGA-GN-A26C-01 20 33575008 33575008 C T MYH7B Silent p.I397I 0.18 TCGA-GN-A26C-01 20 33875448 33875448 G A FAM83C Silent p.S378S 0.16 TCGA-GN-A26C-01 20 33880001 33880001 G A FAM83C Missense_Mutation p.P36L 0.23 deleterious(0.02) probably_damaging(0.973) TCGA-GN-A26C-01 20 34092342 34092342 G A CEP250 Missense_Mutation p.E2049K 0.21 benign(0.018) TCGA-GN-A26C-01 20 3565495 3565495 G A ATRN Missense_Mutation p.S1051N 0.25 tolerated_low_confidence(0.53) benign(0.008) TCGA-GN-A26C-01 20 36993332 36993332 G A LBP Missense_Mutation p.D283N 0.31 tolerated(0.13) benign(0.097) TCGA-GN-A26C-01 20 39991348 39991348 C T EMILIN3 Silent p.R287R 0.16 TCGA-GN-A26C-01 20 40748582 40748582 C T PTPRT Silent p.A959A 0.22 TCGA-GN-A26C-01 20 411128 411128 G A RBCK1 3'UTR 0.26 TCGA-GN-A26C-01 20 41419927 41419927 C T PTPRT Missense_Mutation p.G132R 0.23 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 20 42164515 42164515 C T L3MBTL1 Missense_Mutation p.P600S 0.25 tolerated(0.1) benign(0.06) TCGA-GN-A26C-01 20 42355301 42355301 C T GTSF1L Missense_Mutation p.D12N 0.22 tolerated(1) benign(0.01) TCGA-GN-A26C-01 20 42697335 42697335 C T TOX2 3'UTR 0.35 TCGA-GN-A26C-01 20 43723895 43723895 C T KCNS1 Silent p.K399K 0.25 TCGA-GN-A26C-01 20 44416612 44416612 C T WFDC3 Missense_Mutation p.R74K 0.27 tolerated(0.2) benign(0.103) TCGA-GN-A26C-01 20 45239155 45239155 G A SLC13A3 Silent p.A157A 0.26 TCGA-GN-A26C-01 20 45354776 45354776 C T SLC2A10 Silent p.I367I 0.26 TCGA-GN-A26C-01 20 46256410 46256410 C T NCOA3 Missense_Mutation p.A213V 0.25 tolerated(0.14) benign(0.017) TCGA-GN-A26C-01 20 47626796 47626796 C T ARFGEF2 Silent p.I1204I 0.25 TCGA-GN-A26C-01 20 47858706 47858706 C T DDX27 Silent p.A724A 0.18 TCGA-GN-A26C-01 20 47990206 47990206 C T KCNB1 Missense_Mutation p.G631S 0.30 tolerated_low_confidence(0.82) benign(0.05) TCGA-GN-A26C-01 20 47990589 47990589 G A KCNB1 Missense_Mutation p.S503F 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-GN-A26C-01 20 47990818 47990818 C T KCNB1 Missense_Mutation p.E427K 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A26C-01 20 50273611 50273611 C T ATP9A Missense_Mutation p.E458K 0.38 deleterious(0.01) benign(0.393) TCGA-GN-A26C-01 20 50406908 50406908 G A SALL4 Missense_Mutation p.S705F 0.09 deleterious(0) possibly_damaging(0.467) TCGA-GN-A26C-01 20 52198664 52198664 G A ZNF217 Silent p.H234H 0.31 TCGA-GN-A26C-01 20 57769282 57769282 G A ZNF831 Missense_Mutation p.G1070S 0.38 tolerated(0.62) possibly_damaging(0.676) TCGA-GN-A26C-01 20 57829145 57829145 C - ZNF831 Frame_Shift_Del p.K1462Nfs*38 0.30 TCGA-GN-A26C-01 20 58514273 58514273 G A PPP1R3D Silent p.F238F 0.30 TCGA-GN-A26C-01 20 58519530 58519530 C T FAM217B Missense_Mutation p.L178F 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 20 5904063 5904063 G A CHGB Missense_Mutation p.E425K 0.28 tolerated(0.08) benign(0.022) TCGA-GN-A26C-01 20 62046333 62046333 C T KCNQ2 Missense_Mutation p.S483N 0.10 tolerated(0.15) probably_damaging(0.974) TCGA-GN-A26C-01 20 62201921 62201921 G A HELZ2 Missense_Mutation p.P169L 0.13 deleterious(0.01) benign(0.085) TCGA-GN-A26C-01 20 62365021 62365021 C T ZGPAT Silent p.P267P 0.38 TCGA-GN-A26C-01 20 62642815 62642815 C A PRPF6 Silent p.R495R 0.24 TCGA-GN-A26C-01 20 76787 76787 G A DEFB125 Missense_Mutation p.R67Q 0.26 tolerated(0.41) benign(0.002) TCGA-GN-A26C-01 20 8862337 8862337 C T PLCB1 Silent p.F1164F 0.29 TCGA-GN-A26C-01 20 9459612 9459612 C T PLCB4 Missense_Mutation p.P1181S 0.36 tolerated_low_confidence(0.22) benign(0.002) TCGA-GN-A26C-01 20 9538306 9538306 C T PAK7 Silent p.V564V 0.13 TCGA-GN-A26C-01 20 9561263 9561263 C T PAK7 Missense_Mutation p.M173I 0.20 tolerated(0.4) benign(0) TCGA-GN-A26C-01 21 10862824 10862824 C T IGHV1OR21-1 Silent p.S40S 0.10 TCGA-GN-A26C-01 21 15538756 15538756 C T LIPI Silent p.E241E 0.16 TCGA-GN-A26C-01 21 15599441 15599441 G A RBM11 Missense_Mutation p.G225R 0.14 tolerated_low_confidence(0.43) probably_damaging(0.999) TCGA-GN-A26C-01 21 19744528 19744528 C T TMPRSS15 Missense_Mutation p.E216K 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 21 27852626 27852626 C T CYYR1 Missense_Mutation p.R100K 0.24 tolerated(0.05) benign(0.089) TCGA-GN-A26C-01 21 32638597 32638597 G A TIAM1 Missense_Mutation p.S231F 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 21 34003965 34003965 C T SYNJ1 Silent p.R1393R 0.14 TCGA-GN-A26C-01 21 34003966 34003966 C T SYNJ1 Missense_Mutation p.R1393K 0.14 tolerated_low_confidence(0.62) benign(0.023) TCGA-GN-A26C-01 21 34926081 34926081 C T SON Missense_Mutation p.A1515V 0.14 possibly_damaging(0.483) TCGA-GN-A26C-01 21 38132112 38132112 C T HLCS Missense_Mutation p.D571N 0.17 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 21 40715008 40715008 G A HMGN1 3'UTR 0.22 TCGA-GN-A26C-01 21 41516654 41516654 G A DSCAM Missense_Mutation p.P1008L 0.20 deleterious(0.01) possibly_damaging(0.89) TCGA-GN-A26C-01 21 41725476 41725476 G A DSCAM Missense_Mutation p.R284C 0.18 deleterious(0) probably_damaging(0.977) TCGA-GN-A26C-01 21 45671536 45671536 G A DNMT3L Missense_Mutation p.P247S 0.18 deleterious(0.05) benign(0.139) TCGA-GN-A26C-01 21 45706459 45706459 A T AIRE Missense_Mutation p.E51V 0.27 deleterious(0.02) benign(0.159) TCGA-GN-A26C-01 21 45948356 45948356 C T TSPEAR Missense_Mutation p.E301K 0.17 tolerated(0.85) benign(0) TCGA-GN-A26C-01 21 45959564 45959564 G A KRTAP10-1 Missense_Mutation p.S157F 0.11 tolerated(0.05) unknown(0) TCGA-GN-A26C-01 21 45970616 45970616 T A KRTAP10-2 Silent p.P242P 0.22 TCGA-GN-A26C-01 21 46032653 46032653 C T KRTAP10-8 Silent p.L212L 0.16 TCGA-GN-A26C-01 21 46047310 46047310 C T KRTAP10-9 Silent p.S74S 0.20 TCGA-GN-A26C-01 21 46078040 46078040 C T KRTAP12-3 Silent p.P48P 0.13 TCGA-GN-A26C-01 21 46916446 46916446 C T COL18A1 Silent p.P1027P 0.15 TCGA-GN-A26C-01 21 47549387 47549387 C T COL6A2 Intron 0.13 TCGA-GN-A26C-01 21 47570436 47570436 C T FTCD Missense_Mutation p.G214R 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 21 47678887 47678887 G A MCM3AP Nonsense_Mutation p.Q1234* 0.14 TCGA-GN-A26C-01 21 47847571 47847571 C T PCNT Silent p.D2452D 0.15 TCGA-GN-A26C-01 22 17073359 17073359 C T CCT8L2 Missense_Mutation p.E28K 0.27 tolerated(0.35) benign(0.038) TCGA-GN-A26C-01 22 19707891 19707891 C T SEPT5 Silent p.F137F 0.29 TCGA-GN-A26C-01 22 20929493 20929493 C T MED15 Missense_Mutation p.P416S 0.33 tolerated_low_confidence(0.34) unknown(0) TCGA-GN-A26C-01 22 22277414 22277414 G A PPM1F 3'UTR 0.22 TCGA-GN-A26C-01 22 22599458 22599458 C T VPREB1 Silent p.I49I 0.31 TCGA-GN-A26C-01 22 22868538 22868538 C T ZNF280A Missense_Mutation p.D473N 0.29 tolerated(1) benign(0) TCGA-GN-A26C-01 22 22869722 22869722 T G ZNF280A Missense_Mutation p.H78P 0.24 tolerated(0.17) possibly_damaging(0.701) TCGA-GN-A26C-01 22 23077304 23077304 C T IGLV2-18 Silent p.P27P 0.30 TCGA-GN-A26C-01 22 24584023 24584023 G A SUSD2 Missense_Mutation p.G754D 0.31 tolerated(0.14) probably_damaging(0.992) TCGA-GN-A26C-01 22 24717903 24717903 C T SPECC1L Missense_Mutation p.P319S 0.24 tolerated(0.41) benign(0.427) TCGA-GN-A26C-01 22 25620999 25620999 G A CRYBB2 Missense_Mutation p.G57R 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 22 25621000 25621000 G A CRYBB2 Missense_Mutation p.G57E 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 22 25627647 25627647 G A CRYBB2 Missense_Mutation p.D176N 0.23 tolerated(0.08) benign(0.096) TCGA-GN-A26C-01 22 26164179 26164179 C T MYO18B Missense_Mutation p.P99L 0.34 tolerated_low_confidence(0.12) benign(0.009) TCGA-GN-A26C-01 22 26422879 26422879 C T MYO18B Silent p.I2313I 0.32 TCGA-GN-A26C-01 22 26694974 26694974 C T SEZ6L Missense_Mutation p.P396L 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 22 28192897 28192897 C T MN1 Missense_Mutation p.S1212N 0.30 benign(0.264) TCGA-GN-A26C-01 22 29139919 29139919 C G HSCB Missense_Mutation p.Q96E 0.24 tolerated(0.21) benign(0.003) TCGA-GN-A26C-01 22 29455002 29455002 C T C22orf31 Missense_Mutation p.D201N 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A26C-01 22 29708407 29708407 C T GAS2L1 3'Flank 0.34 TCGA-GN-A26C-01 22 29837868 29837868 C T RFPL1 Silent p.F237F 0.20 TCGA-GN-A26C-01 22 30090780 30090780 G T NF2 Nonsense_Mutation p.E593* 0.29 TCGA-GN-A26C-01 22 30886159 30886159 G A SEC14L4 Missense_Mutation p.P386S 0.19 deleterious(0) possibly_damaging(0.758) TCGA-GN-A26C-01 22 31503396 31503396 G A SELM Silent p.N32N 0.37 TCGA-GN-A26C-01 22 31998226 31998226 C T SFI1 Missense_Mutation p.L525F 0.20 deleterious(0.03) benign(0.007) TCGA-GN-A26C-01 22 32108135 32108135 G A PRR14L Missense_Mutation p.S1897F 0.21 deleterious(0) possibly_damaging(0.461) TCGA-GN-A26C-01 22 32445953 32445953 G A SLC5A1 Silent p.G53G 0.30 TCGA-GN-A26C-01 22 32548057 32548057 G A C22orf42 Missense_Mutation p.H133Y 0.19 tolerated_low_confidence(0.2) benign(0) TCGA-GN-A26C-01 22 32831715 32831715 G A BPIFC Silent p.F300F 0.15 TCGA-GN-A26C-01 22 36007086 36007086 C T MB Missense_Mutation p.E55K 0.29 deleterious(0.01) benign(0.214) TCGA-GN-A26C-01 22 36122288 36122288 A T APOL5 Missense_Mutation p.K58I 0.26 deleterious(0.01) possibly_damaging(0.751) TCGA-GN-A26C-01 22 36962500 36962500 C T CACNG2 Silent p.V112V 0.28 TCGA-GN-A26C-01 22 37322095 37322095 C T CSF2RB Silent p.P89P 0.29 TCGA-GN-A26C-01 22 37334311 37334311 G A CSF2RB Missense_Mutation p.D821N 0.27 deleterious(0) probably_damaging(0.932) TCGA-GN-A26C-01 22 37770222 37770222 G A ELFN2 Silent p.S451S 0.26 TCGA-GN-A26C-01 22 37964869 37964869 C T CDC42EP1 3'UTR 0.35 TCGA-GN-A26C-01 22 38266249 38266249 C T EIF3L Missense_Mutation p.R216C 0.30 tolerated(0.14) benign(0.052) TCGA-GN-A26C-01 22 38536077 38536077 G A PLA2G6 Missense_Mutation p.R237C 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-GN-A26C-01 22 38536078 38536078 G A PLA2G6 Silent p.V236V 0.20 TCGA-GN-A26C-01 22 38692745 38692745 G A CSNK1E Intron 0.21 TCGA-GN-A26C-01 22 39222561 39222561 C T NPTXR Missense_Mutation p.E348K 0.25 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 22 39421260 39421260 C G APOBEC3D Silent p.A132A 0.25 TCGA-GN-A26C-01 22 40351845 40351845 G A GRAP2 Nonsense_Mutation p.W34* 0.20 TCGA-GN-A26C-01 22 40717151 40717151 C T TNRC6B Missense_Mutation p.H1678Y 0.23 deleterious(0) possibly_damaging(0.794) TCGA-GN-A26C-01 22 41924005 41924005 G A ACO2 Silent p.L729L 0.21 TCGA-GN-A26C-01 22 42538831 42538831 A T NDUFA6-AS1 3'Flank 0.13 TCGA-GN-A26C-01 22 42608868 42608868 G A TCF20 Missense_Mutation p.P815L 0.31 probably_damaging(0.999) TCGA-GN-A26C-01 22 42781022 42781022 C G NFAM1 3'UTR 0.28 TCGA-GN-A26C-01 22 43089692 43089692 T C A4GALT Missense_Mutation p.N89S 0.18 tolerated(0.32) benign(0.003) TCGA-GN-A26C-01 22 44127612 44127612 C T EFCAB6 Missense_Mutation p.D242N 0.23 tolerated(0.3) benign(0.006) TCGA-GN-A26C-01 22 44645538 44645538 C T KIAA1644 3'UTR 0.21 TCGA-GN-A26C-01 22 44966433 44966433 A C LINC00207 RNA 0.30 TCGA-GN-A26C-01 22 45728384 45728384 C T FAM118A Nonsense_Mutation p.Q244* 0.27 TCGA-GN-A26C-01 22 46652877 46652877 C T PKDREJ Missense_Mutation p.E2115K 0.22 deleterious(0) probably_damaging(0.991) TCGA-GN-A26C-01 22 46658098 46658098 C T PKDREJ Silent p.Q374Q 0.20 TCGA-GN-A26C-01 22 47061598 47061598 C T GRAMD4 Silent p.I268I 0.30 TCGA-GN-A26C-01 22 50470286 50470286 G A TTLL8 Silent p.F528F 0.23 TCGA-GN-A26C-01 22 50512717 50512717 G A MLC1 Silent p.I214I 0.27 TCGA-GN-A26C-01 22 50632027 50632027 C T TRABD Missense_Mutation p.P19L 0.27 tolerated_low_confidence(0.06) benign(0.001) TCGA-GN-A26C-01 22 50704665 50704665 G A MAPK11 Missense_Mutation p.S251F 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26C-01 22 50903087 50903087 G A SBF1 Silent p.P504P 0.21 TCGA-GN-A26C-01 2 100185362 100185362 A T AFF3 Missense_Mutation p.D1003E 0.22 deleterious(0) benign(0.239) TCGA-GN-A26C-01 2 102781284 102781284 G A IL1R1 Missense_Mutation p.E38K 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-GN-A26C-01 2 102792865 102792865 C T IL1R1 Silent p.I452I 0.11 TCGA-GN-A26C-01 2 103061706 103061706 C T IL18RAP Silent p.V326V 0.31 TCGA-GN-A26C-01 2 103067330 103067330 C T IL18RAP Silent p.F411F 0.27 TCGA-GN-A26C-01 2 103095638 103095638 C T SLC9A4 Silent p.F199F 0.23 TCGA-GN-A26C-01 2 103136335 103136335 G A SLC9A4 Missense_Mutation p.G580E 0.24 tolerated(0.92) benign(0.002) TCGA-GN-A26C-01 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.32 benign(0.002) TCGA-GN-A26C-01 2 107460208 107460208 C A ST6GAL2 Missense_Mutation p.A76S 0.19 benign(0.008) TCGA-GN-A26C-01 2 108496519 108496519 C T RGPD4 Missense_Mutation p.R1674W 0.24 deleterious_low_confidence(0) benign(0) TCGA-GN-A26C-01 2 109379696 109379696 C T RANBP2 Missense_Mutation p.P901S 0.31 tolerated(0.07) benign(0.072) TCGA-GN-A26C-01 2 1093908 1093908 G A SNTG2 Silent p.Q79Q 0.13 TCGA-GN-A26C-01 2 110919263 110919263 G A NPHP1 Nonsense_Mutation p.R347* 0.22 TCGA-GN-A26C-01 2 111399377 111399377 G A BUB1 Nonsense_Mutation p.Q823* 0.26 TCGA-GN-A26C-01 2 112761530 112761530 C T MERTK Silent p.T612T 0.27 TCGA-GN-A26C-01 2 113088891 113088891 C T ZC3H6 Missense_Mutation p.S799F 0.25 deleterious(0.01) possibly_damaging(0.878) TCGA-GN-A26C-01 2 113243522 113243522 G T TTL Silent p.V62V 0.14 TCGA-GN-A26C-01 2 113765525 113765525 C T IL36A Silent p.F127F 0.36 TCGA-GN-A26C-01 2 113943511 113943511 C T PSD4 Missense_Mutation p.P436L 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.545) TCGA-GN-A26C-01 2 11742591 11742591 C T GREB1 Silent p.S863S 0.19 TCGA-GN-A26C-01 2 11922626 11922626 G T LPIN1 Missense_Mutation p.R468S 0.24 tolerated(0.08) benign(0.061) TCGA-GN-A26C-01 2 120003247 120003247 C T STEAP3 Missense_Mutation p.R69C 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 2 120005343 120005343 C T STEAP3 Missense_Mutation p.S204F 0.19 deleterious(0.03) probably_damaging(0.921) TCGA-GN-A26C-01 2 122038784 122038784 G A TFCP2L1 Silent p.A42A 0.21 TCGA-GN-A26C-01 2 122227479 122227479 G A CLASP1 Missense_Mutation p.S257F 0.22 deleterious(0) possibly_damaging(0.786) TCGA-GN-A26C-01 2 128047394 128047394 G A ERCC3 Silent p.F176F 0.26 TCGA-GN-A26C-01 2 128051098 128051098 G A ERCC3 Silent p.P75P 0.40 TCGA-GN-A26C-01 2 128699646 128699646 C T SAP130 Silent p.L1062L 0.23 TCGA-GN-A26C-01 2 128947294 128947294 C T UGGT1 Missense_Mutation p.P1549L 0.24 tolerated(0.2) benign(0) TCGA-GN-A26C-01 2 130832861 130832861 C T POTEF Silent p.R728R 0.27 TCGA-GN-A26C-01 2 130832920 130832920 C T POTEF Missense_Mutation p.V709I 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.454) TCGA-GN-A26C-01 2 130930381 130930381 G A SMPD4 Missense_Mutation p.L184F 0.31 tolerated(0.25) probably_damaging(0.934) TCGA-GN-A26C-01 2 131520353 131520353 G A AMER3 Silent p.E236E 0.15 TCGA-GN-A26C-01 2 131520354 131520354 G A AMER3 Missense_Mutation p.D237N 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 131522187 131522187 G A AMER3 Missense_Mutation p.E848K 0.25 tolerated(0.08) possibly_damaging(0.516) TCGA-GN-A26C-01 2 132010623 132010623 A T POTEE Missense_Mutation p.T577S 0.19 tolerated_low_confidence(0.07) benign(0.292) TCGA-GN-A26C-01 2 132905757 132905757 C T ANKRD30BL 3'UTR 0.31 TCGA-GN-A26C-01 2 133540977 133540977 C T NCKAP5 Missense_Mutation p.S1136N 0.20 tolerated(1) benign(0.004) TCGA-GN-A26C-01 2 133543266 133543266 C T NCKAP5 Missense_Mutation p.R373K 0.36 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 2 135621039 135621039 C T ACMSD Silent p.P108P 0.28 TCGA-GN-A26C-01 2 135745789 135745789 C T MAP3K19 Missense_Mutation p.R218Q 0.19 deleterious(0.04) benign(0.027) TCGA-GN-A26C-01 2 135779349 135779349 G A MAP3K19 Missense_Mutation p.P25L 0.31 deleterious_low_confidence(0.03) benign(0.086) TCGA-GN-A26C-01 2 136579743 136579743 C T LCT Intron 0.32 TCGA-GN-A26C-01 2 136603847 136603847 G A MCM6 Silent p.I723I 0.22 TCGA-GN-A26C-01 2 138169266 138169266 C T THSD7B Missense_Mutation p.S928F 0.29 deleterious(0) possibly_damaging(0.683) TCGA-GN-A26C-01 2 141115608 141115608 G A LRP1B Missense_Mutation p.L3779F 0.42 possibly_damaging(0.849) TCGA-GN-A26C-01 2 141202219 141202219 G A LRP1B Nonsense_Mutation p.Q3363* 0.34 TCGA-GN-A26C-01 2 141283561 141283561 A G LRP1B Silent p.N2626N 0.33 TCGA-GN-A26C-01 2 144765040 144765040 C T GTDC1 Missense_Mutation p.G195D 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-GN-A26C-01 2 149247097 149247097 C T MBD5 Missense_Mutation p.S1066F 0.24 tolerated_low_confidence(0.71) unknown(0) TCGA-GN-A26C-01 2 1500403 1500403 G A TPO Missense_Mutation p.G751E 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 2 1500405 1500405 G A TPO Missense_Mutation p.D752N 0.23 tolerated(0.12) benign(0.076) TCGA-GN-A26C-01 2 1507821 1507821 G A TPO Missense_Mutation p.E830K 0.13 tolerated(0.61) benign(0.036) TCGA-GN-A26C-01 2 152273180 152273180 C T RIF1 Missense_Mutation p.P129L 0.25 deleterious(0) possibly_damaging(0.883) TCGA-GN-A26C-01 2 152321487 152321487 C T RIF1 Missense_Mutation p.S1818L 0.28 tolerated_low_confidence(1) benign(0) TCGA-GN-A26C-01 2 152410526 152410526 G A NEB Missense_Mutation p.S6481L 0.18 possibly_damaging(0.727) TCGA-GN-A26C-01 2 152529026 152529026 C T NEB Missense_Mutation p.D1386N 0.21 probably_damaging(0.973) TCGA-GN-A26C-01 2 152554096 152554096 A G NEB Missense_Mutation p.F407L 0.24 possibly_damaging(0.755) TCGA-GN-A26C-01 2 152573980 152573980 C T NEB Missense_Mutation p.D258N 0.13 probably_damaging(0.995) TCGA-GN-A26C-01 2 154996859 154996859 C T GALNT13 Missense_Mutation p.S51L 0.28 tolerated(0.3) benign(0.001) TCGA-GN-A26C-01 2 155307062 155307062 G A GALNT13 Silent p.%3D 0.30 TCGA-GN-A26C-01 2 157182757 157182757 C T NR4A2 Nonsense_Mutation p.W482* 0.20 TCGA-GN-A26C-01 2 157439382 157439382 C T GPD2 Silent p.L712L 0.28 TCGA-GN-A26C-01 2 160605254 160605254 C T MARCH7 Missense_Mutation p.R485W 0.25 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 2 160734882 160734882 C T LY75-CD302 Missense_Mutation p.G576E 0.16 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 2 160898678 160898678 C T PLA2R1 Silent p.G175G 0.26 TCGA-GN-A26C-01 2 160958284 160958284 C T ITGB6 Missense_Mutation p.R777K 0.20 tolerated(1) benign(0.002) TCGA-GN-A26C-01 2 161143583 161143583 G A RBMS1 Missense_Mutation p.P218L 0.13 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 2 163031376 163031376 C T FAP Splice_Site p.X657_splice 0.25 TCGA-GN-A26C-01 2 163253381 163253381 G A KCNH7 Missense_Mutation p.L828F 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 2 165947816 165947816 G A SCN3A Missense_Mutation p.S1616F 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 2 166172255 166172255 C T SCN2A Missense_Mutation p.S553F 0.17 deleterious(0.02) benign(0.118) TCGA-GN-A26C-01 2 166179830 166179830 C T SCN2A Silent p.F612F 0.34 TCGA-GN-A26C-01 2 166740445 166740445 C G TTC21B Missense_Mutation p.K1181N 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 2 169995847 169995847 G A LRP2 Silent p.I4434I 0.29 TCGA-GN-A26C-01 2 170012891 170012891 C T LRP2 Missense_Mutation p.G4015E 0.26 probably_damaging(0.958) TCGA-GN-A26C-01 2 170027124 170027124 G A LRP2 Missense_Mutation p.P3773S 0.25 probably_damaging(0.951) TCGA-GN-A26C-01 2 170037990 170037990 G A LRP2 Silent p.L3379L 0.28 TCGA-GN-A26C-01 2 170492625 170492625 C T PPIG Silent p.S347S 0.32 TCGA-GN-A26C-01 2 171248918 171248918 G A MYO3B Silent p.V568V 0.22 TCGA-GN-A26C-01 2 171573029 171573029 C T SP5 Silent p.S104S 0.21 TCGA-GN-A26C-01 2 171822316 171822316 T C GORASP2 Silent p.P345P 0.24 TCGA-GN-A26C-01 2 171822317 171822317 T C GORASP2 Missense_Mutation p.S346P 0.24 tolerated(0.18) possibly_damaging(0.665) TCGA-GN-A26C-01 2 171822318 171822318 C T GORASP2 Missense_Mutation p.S346F 0.24 deleterious(0) possibly_damaging(0.831) TCGA-GN-A26C-01 2 173787010 173787010 G A RAPGEF4 Silent p.R173R 0.22 TCGA-GN-A26C-01 2 174131192 174131192 C T MLTK Missense_Mutation p.S706L 0.21 deleterious_low_confidence(0.05) benign(0.001) TCGA-GN-A26C-01 2 17698599 17698599 C T RAD51AP2 Missense_Mutation p.D362N 0.27 tolerated(0.33) benign(0.015) TCGA-GN-A26C-01 2 178879164 178879164 G A PDE11A Silent p.I312I 0.25 TCGA-GN-A26C-01 2 179396737 179396737 C T TTN Missense_Mutation p.E34869K 0.28 TCGA-GN-A26C-01 2 179413186 179413186 C T TTN Missense_Mutation p.R31056Q 0.23 TCGA-GN-A26C-01 2 179427823 179427823 G A TTN Missense_Mutation p.A27679V 0.20 TCGA-GN-A26C-01 2 179439680 179439680 G A TTN Missense_Mutation p.P23727S 0.23 TCGA-GN-A26C-01 2 179522819 179522819 C T TTN Missense_Mutation p.A12593T 0.53 TCGA-GN-A26C-01 2 179534397 179534397 C T TTN Missense_Mutation p.E11798K 0.27 TCGA-GN-A26C-01 2 179535832 179535832 C T TTN Missense_Mutation p.E11765K 0.31 TCGA-GN-A26C-01 2 179546108 179546108 G A TTN Missense_Mutation p.P11081L 0.16 TCGA-GN-A26C-01 2 179553445 179553445 G A TTN Missense_Mutation p.S10719F 0.19 TCGA-GN-A26C-01 2 179558413 179558413 G A TTN Missense_Mutation p.P10506L 0.21 TCGA-GN-A26C-01 2 179577973 179577973 C T TTN Missense_Mutation p.G8963E 0.28 TCGA-GN-A26C-01 2 179581857 179581857 C T TTN Missense_Mutation p.G8535E 0.25 TCGA-GN-A26C-01 2 179584982 179584982 C T TTN Missense_Mutation p.R7796Q 0.15 TCGA-GN-A26C-01 2 179585332 179585332 C T TTN Silent p.V7719V 0.15 TCGA-GN-A26C-01 2 179588149 179588149 C T TTN Silent p.V7226V 0.46 TCGA-GN-A26C-01 2 179590249 179590249 C T TTN Silent p.V6894V 0.21 TCGA-GN-A26C-01 2 179596173 179596173 C T TTN Missense_Mutation p.D5774N 0.29 TCGA-GN-A26C-01 2 179598488 179598488 C T TTN Missense_Mutation p.E5210K 0.22 TCGA-GN-A26C-01 2 179604872 179604872 G A TTN Missense_Mutation p.P4363L 0.17 TCGA-GN-A26C-01 2 179606422 179606422 G A TTN Silent p.I3846I 0.33 TCGA-GN-A26C-01 2 179611120 179611120 A T TTN Intron 0.32 TCGA-GN-A26C-01 2 179612026 179612026 T A TTN Intron 0.42 TCGA-GN-A26C-01 2 179612131 179612131 G A TTN Intron 0.24 TCGA-GN-A26C-01 2 179615609 179615609 C T TTN Intron 0.14 TCGA-GN-A26C-01 2 179718304 179718304 T C CCDC141 Silent p.G1036G 0.24 TCGA-GN-A26C-01 2 18112486 18112486 C T KCNS3 Missense_Mutation p.R71W 0.11 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 2 183795517 183795517 C T NCKAP1 Splice_Site p.X960_splice 0.16 TCGA-GN-A26C-01 2 18766395 18766395 C T NT5C1B Intron 0.30 TCGA-GN-A26C-01 2 18768844 18768844 C T NT5C1B Missense_Mutation p.M15I 0.11 tolerated_low_confidence(0.1) benign(0.003) TCGA-GN-A26C-01 2 188361661 188361661 C T TFPI Missense_Mutation p.G89E 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 189852835 189852835 G A COL3A1 Missense_Mutation p.G186D 0.33 unknown(0) TCGA-GN-A26C-01 2 189856222 189856222 G A COL3A1 Missense_Mutation p.G288S 0.36 unknown(0) TCGA-GN-A26C-01 2 189859813 189859813 C T COL3A1 Silent p.I499I 0.23 TCGA-GN-A26C-01 2 189870087 189870087 G A COL3A1 Silent p.G981G 0.29 TCGA-GN-A26C-01 2 189943285 189943285 C T COL5A2 Missense_Mutation p.G339E 0.25 probably_damaging(0.998) TCGA-GN-A26C-01 2 189951477 189951477 C T COL5A2 Missense_Mutation p.G222E 0.19 probably_damaging(1) TCGA-GN-A26C-01 2 190439994 190439994 C T SLC40A1 Missense_Mutation p.G55E 0.27 tolerated(0.07) possibly_damaging(0.566) TCGA-GN-A26C-01 2 191895761 191895761 G A STAT4 Silent p.P719P 0.21 TCGA-GN-A26C-01 2 192700840 192700840 C T SDPR Missense_Mutation p.G363R 0.29 tolerated_low_confidence(0.16) benign(0.046) TCGA-GN-A26C-01 2 196640681 196640681 C T DNAH7 Silent p.K3697K 0.16 TCGA-GN-A26C-01 2 196651884 196651884 C T DNAH7 Silent p.K3576K 0.17 TCGA-GN-A26C-01 2 196722105 196722105 C T DNAH7 Missense_Mutation p.D2804N 0.38 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 2 196729347 196729347 C T DNAH7 Silent p.G2344G 0.24 TCGA-GN-A26C-01 2 196729348 196729348 C T DNAH7 Missense_Mutation p.G2344E 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 196749422 196749422 G A DNAH7 Nonsense_Mutation p.R1884* 0.30 TCGA-GN-A26C-01 2 197085603 197085603 C T HECW2 Silent p.K1403K 0.26 TCGA-GN-A26C-01 2 197182013 197182013 C T HECW2 Missense_Mutation p.E807K 0.16 deleterious(0) benign(0.158) TCGA-GN-A26C-01 2 197708737 197708737 G A PGAP1 Silent p.H800H 0.17 TCGA-GN-A26C-01 2 201747152 201747152 A T PPIL3 Intron 0.25 TCGA-GN-A26C-01 2 202074227 202074227 G A CASP10 Missense_Mutation p.E453K 0.24 tolerated(0.23) benign(0.008) TCGA-GN-A26C-01 2 202340374 202340374 C T STRADB Missense_Mutation p.P153S 0.30 tolerated(0.55) probably_damaging(0.951) TCGA-GN-A26C-01 2 204078284 204078284 C T NBEAL1 Missense_Mutation p.H2631Y 0.21 tolerated(0.4) benign(0.002) TCGA-GN-A26C-01 2 204359988 204359988 G A RAPH1 Missense_Mutation p.A30V 0.25 probably_damaging(0.926) TCGA-GN-A26C-01 2 20494229 20494229 G A PUM2 Missense_Mutation p.P354S 0.15 deleterious(0) probably_damaging(0.954) TCGA-GN-A26C-01 2 206166532 206166532 G A PARD3B Intron 0.34 TCGA-GN-A26C-01 2 207175252 207175252 G A ZDBF2 Silent p.L2000L 0.30 TCGA-GN-A26C-01 2 207460822 207460822 G A ADAM23 Silent p.G765G 0.17 TCGA-GN-A26C-01 2 207530676 207530676 C T DYTN Missense_Mutation p.R353Q 0.27 tolerated(0.14) possibly_damaging(0.836) TCGA-GN-A26C-01 2 207575313 207575313 T A DYTN Missense_Mutation p.N10I 0.24 deleterious(0) probably_damaging(0.966) TCGA-GN-A26C-01 2 207988766 207988766 G A KLF7 Silent p.L155L 0.20 TCGA-GN-A26C-01 2 209302306 209302306 A T PTH2R Nonsense_Mutation p.R75* 0.18 TCGA-GN-A26C-01 2 209302307 209302307 G A PTH2R Missense_Mutation p.R75K 0.17 tolerated(0.46) possibly_damaging(0.654) TCGA-GN-A26C-01 2 211447358 211447358 G A CPS1 Silent p.K188K 0.21 TCGA-GN-A26C-01 2 21224642 21224649 TAGGGGTT - APOB Frame_Shift_Del p.N4549Hfs*16 0.23 TCGA-GN-A26C-01 2 21228894 21228894 G A APOB Missense_Mutation p.L3616F 0.17 benign(0.005) TCGA-GN-A26C-01 2 216269122 216269122 G C FN1 Silent p.V1081V 0.17 TCGA-GN-A26C-01 2 216269123 216269123 A C FN1 Missense_Mutation p.V1081G 0.17 tolerated(0.05) possibly_damaging(0.876) TCGA-GN-A26C-01 2 219029590 219029590 G A CXCR1 Silent p.L115L 0.21 TCGA-GN-A26C-01 2 219294066 219294066 G A VIL1 Missense_Mutation p.G209D 0.24 deleterious(0.02) possibly_damaging(0.848) TCGA-GN-A26C-01 2 219494318 219494318 G A PLCD4 Missense_Mutation p.G351R 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 219617531 219617531 C T TTLL4 Missense_Mutation p.R1008W 0.21 deleterious(0) probably_damaging(0.959) TCGA-GN-A26C-01 2 219920036 219920036 G A IHH Missense_Mutation p.P377S 0.36 tolerated(0.24) benign(0.061) TCGA-GN-A26C-01 2 220168539 220168539 C T PTPRN Missense_Mutation p.D99N 0.36 deleterious(0.02) possibly_damaging(0.796) TCGA-GN-A26C-01 2 220350134 220350134 C T SPEG Missense_Mutation p.S2559L 0.22 benign(0.003) TCGA-GN-A26C-01 2 220357315 220357315 G A SPEG Splice_Site p.X3204_splice 0.25 TCGA-GN-A26C-01 2 220370708 220370708 C T GMPPA Missense_Mutation p.P303S 0.29 deleterious(0) probably_damaging(0.987) TCGA-GN-A26C-01 2 220405064 220405064 G A CHPF Missense_Mutation p.P457S 0.29 deleterious(0) probably_damaging(0.951) TCGA-GN-A26C-01 2 220500143 220500143 C T SLC4A3 Missense_Mutation p.L660F 0.26 deleterious(0) probably_damaging(0.929) TCGA-GN-A26C-01 2 223086015 223086015 G A PAX3 Missense_Mutation p.P295L 0.25 deleterious(0) benign(0.167) TCGA-GN-A26C-01 2 223423243 223423243 G A SGPP2 Missense_Mutation p.D276N 0.18 deleterious(0.04) possibly_damaging(0.866) TCGA-GN-A26C-01 2 224828523 224828523 G A MRPL44 Silent p.K233K 0.24 TCGA-GN-A26C-01 2 226447449 226447449 C T NYAP2 Missense_Mutation p.P439L 0.26 tolerated(0.51) probably_damaging(1) TCGA-GN-A26C-01 2 228118846 228118846 G A COL4A3 Missense_Mutation p.G262R 0.24 probably_damaging(1) TCGA-GN-A26C-01 2 228197249 228197249 G T MFF Missense_Mutation p.R125I 0.15 deleterious(0) probably_damaging(0.99) TCGA-GN-A26C-01 2 228563620 228563620 C T SLC19A3 Missense_Mutation p.E271K 0.20 tolerated(0.06) possibly_damaging(0.672) TCGA-GN-A26C-01 2 228882709 228882709 C T SPHKAP Missense_Mutation p.G954E 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 228883993 228883993 G A SPHKAP Missense_Mutation p.S526L 0.21 deleterious(0.04) benign(0.014) TCGA-GN-A26C-01 2 228884786 228884786 C T SPHKAP Missense_Mutation p.E262K 0.24 tolerated(0.35) benign(0.019) TCGA-GN-A26C-01 2 231035360 231035360 G A SP110 Missense_Mutation p.R669C 0.23 tolerated(0.08) possibly_damaging(0.835) TCGA-GN-A26C-01 2 231266128 231266128 C T SP140L Silent p.S490S 0.13 TCGA-GN-A26C-01 2 231379974 231379974 C T SP100 Intron 0.12 TCGA-GN-A26C-01 2 231380144 231380144 C T SP100 Intron 0.25 TCGA-GN-A26C-01 2 231380145 231380145 C T SP100 Intron 0.24 TCGA-GN-A26C-01 2 231406721 231406721 A G SP100 Missense_Mutation p.I840V 0.17 deleterious(0.01) benign(0.068) TCGA-GN-A26C-01 2 234106805 234106805 C T INPP5D Missense_Mutation p.P908S 0.17 tolerated(0.38) benign(0.008) TCGA-GN-A26C-01 2 234106806 234106806 C T INPP5D Missense_Mutation p.P908L 0.17 tolerated(0.3) benign(0.005) TCGA-GN-A26C-01 2 234526903 234526903 C T UGT1A8 Missense_Mutation p.P184S 0.30 deleterious(0.01) probably_damaging(0.951) TCGA-GN-A26C-01 2 234847758 234847758 C T TRPM8 Silent p.F155F 0.28 TCGA-GN-A26C-01 2 235951492 235951492 C T SH3BP4 Silent p.L693L 0.29 TCGA-GN-A26C-01 2 237300918 237300918 C T IQCA1 Missense_Mutation p.R429Q 0.23 deleterious(0.01) possibly_damaging(0.773) TCGA-GN-A26C-01 2 237489778 237489778 C T ACKR3 Missense_Mutation p.P224S 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 238263554 238263554 G A COL6A3 Silent p.P2205P 0.09 TCGA-GN-A26C-01 2 238940868 238940868 C T UBE2F Silent p.V139V 0.18 TCGA-GN-A26C-01 2 238999948 238999948 C T SCLY Intron 0.36 TCGA-GN-A26C-01 2 239049740 239049740 C T KLHL30 Silent p.F115F 0.32 TCGA-GN-A26C-01 2 241468854 241468854 G A ANKMY1 Silent p.L96L 0.40 TCGA-GN-A26C-01 2 24536370 24536370 G A ITSN2 Silent p.F49F 0.31 TCGA-GN-A26C-01 2 27001223 27001223 C T SLC35F6 Silent p.I320I 0.26 TCGA-GN-A26C-01 2 27257005 27257005 G A TMEM214 Silent p.E74E 0.20 TCGA-GN-A26C-01 2 27445150 27445150 C T CAD Silent p.S147S 0.24 TCGA-GN-A26C-01 2 28634933 28634933 C T FOSL2 Missense_Mutation p.S200L 0.29 tolerated(0.46) benign(0.006) TCGA-GN-A26C-01 2 29225440 29225440 C T FAM179A Silent p.L156L 0.29 TCGA-GN-A26C-01 2 29404519 29404519 G A CLIP4 Silent p.G626G 0.16 TCGA-GN-A26C-01 2 30966436 30966436 C T CAPN13 Missense_Mutation p.E420K 0.26 tolerated(0.36) benign(0.05) TCGA-GN-A26C-01 2 32372286 32372286 G A SPAST Splice_Site p.X563_splice 0.17 TCGA-GN-A26C-01 2 32474890 32474890 C T NLRC4 Silent p.G681G 0.17 TCGA-GN-A26C-01 2 32476013 32476013 G A NLRC4 Missense_Mutation p.A307V 0.25 tolerated(0.71) benign(0.015) TCGA-GN-A26C-01 2 33518330 33518330 G A LTBP1 Silent p.P1072P 0.14 TCGA-GN-A26C-01 2 37410652 37410652 C T SULT6B1 Missense_Mutation p.M68I 0.15 tolerated(0.18) benign(0.032) TCGA-GN-A26C-01 2 40392089 40392089 C T SLC8A1 Missense_Mutation p.E692K 0.23 tolerated(0.06) benign(0.101) TCGA-GN-A26C-01 2 44508548 44508548 C T SLC3A1 Silent p.F211F 0.14 TCGA-GN-A26C-01 2 44527121 44527121 G A SLC3A1 Silent p.R301R 0.12 TCGA-GN-A26C-01 2 46603707 46603707 C T EPAS1 Missense_Mutation p.S355F 0.09 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 2 48809019 48809019 C T STON1-GTF2A1L Missense_Mutation p.S416F 0.12 tolerated(0.47) benign(0.026) TCGA-GN-A26C-01 2 49190896 49190896 G A FSHR Missense_Mutation p.P355L 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 50733674 50733674 T A NRXN1 Missense_Mutation p.K859I 0.26 deleterious(0) probably_damaging(0.915) TCGA-GN-A26C-01 2 51254950 51254950 G A NRXN1 Silent p.F154F 0.26 TCGA-GN-A26C-01 2 64327602 64327602 G A PELI1 Missense_Mutation p.S78L 0.34 deleterious(0) possibly_damaging(0.904) TCGA-GN-A26C-01 2 68882048 68882048 G A PROKR1 Missense_Mutation p.M174I 0.28 deleterious(0.03) benign(0.374) TCGA-GN-A26C-01 2 69207978 69207978 G A GKN1 3'UTR 0.21 TCGA-GN-A26C-01 2 69409715 69409715 G A ANTXR1 Missense_Mutation p.E426K 0.15 deleterious(0.01) possibly_damaging(0.889) TCGA-GN-A26C-01 2 70931582 70931582 C T ADD2 Missense_Mutation p.E65K 0.14 deleterious(0) benign(0.354) TCGA-GN-A26C-01 2 71060879 71060879 G A CD207 Missense_Mutation p.P155S 0.14 tolerated(0.09) probably_damaging(0.965) TCGA-GN-A26C-01 2 71357326 71357326 T C MCEE Silent p.A8A 0.25 TCGA-GN-A26C-01 2 71357754 71357754 C T MPHOSPH10 5'UTR 0.41 TCGA-GN-A26C-01 2 71883420 71883420 G A DYSF Silent p.K1585K 0.16 TCGA-GN-A26C-01 2 73799546 73799546 C T ALMS1 Silent p.F3513F 0.13 TCGA-GN-A26C-01 2 74042871 74042871 C T C2orf78 Silent p.S507S 0.32 TCGA-GN-A26C-01 2 74136191 74136191 G A ACTG2 Missense_Mutation p.E126K 0.31 deleterious_low_confidence(0.03) benign(0.323) TCGA-GN-A26C-01 2 74598249 74598249 G A DCTN1 Silent p.L234L 0.18 TCGA-GN-A26C-01 2 75425696 75425696 G A TACR1 Missense_Mutation p.S122F 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 2 75882273 75882273 T C MRPL19 Silent p.L247L 0.32 TCGA-GN-A26C-01 2 79363185 79363185 C T REG1P RNA 0.35 TCGA-GN-A26C-01 2 79385792 79385792 G A REG3A Silent p.S60S 0.42 TCGA-GN-A26C-01 2 80874990 80874990 C T CTNNA2 Missense_Mutation p.S904F 0.27 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-GN-A26C-01 2 86831623 86831623 G A RNF103 Silent p.F467F 0.22 TCGA-GN-A26C-01 2 88405880 88405880 G A SMYD1 Missense_Mutation p.E340K 0.17 tolerated(0.1) benign(0.003) TCGA-GN-A26C-01 2 88422558 88422558 G A FABP1 3'UTR 0.31 TCGA-GN-A26C-01 2 88828788 88828788 C T TEX37 Silent p.S113S 0.10 TCGA-GN-A26C-01 2 89160118 89160118 C T IGKC 5'Flank 0.25 TCGA-GN-A26C-01 2 89309564 89309564 G A IGKV1-9 Missense_Mutation p.S89F 0.39 deleterious(0.02) possibly_damaging(0.633) TCGA-GN-A26C-01 2 89399463 89399463 G A IGKV1-16 Silent p.V80V 0.36 TCGA-GN-A26C-01 2 89476122 89476122 C T IGKV2-24 Missense_Mutation p.G17E 0.12 tolerated(0.07) benign(0.166) TCGA-GN-A26C-01 2 89987019 89987019 C T IGKV2D-29 Silent p.I100I 0.09 TCGA-GN-A26C-01 2 90044362 90044362 G A IGKV2D-24 Missense_Mutation p.D95N 0.30 deleterious(0.01) benign(0.433) TCGA-GN-A26C-01 2 90193154 90193154 C T IGKV1D-13 Silent p.T27T 0.29 TCGA-GN-A26C-01 2 96259949 96259949 C T TRIM43 Missense_Mutation p.P60S 0.32 tolerated(0.14) benign(0) TCGA-GN-A26C-01 2 96259968 96259968 C T TRIM43 Missense_Mutation p.T66I 0.43 tolerated(0.05) benign(0.234) TCGA-GN-A26C-01 2 96799745 96799745 C T ASTL Missense_Mutation p.S99N 0.17 tolerated(0.93) benign(0.011) TCGA-GN-A26C-01 2 97217942 97217942 C T ARID5A Silent p.F559F 0.24 TCGA-GN-A26C-01 2 97267445 97267445 G A KANSL3 Missense_Mutation p.P851S 0.30 tolerated_low_confidence(0.57) probably_damaging(0.991) TCGA-GN-A26C-01 2 97527359 97527359 G A SEMA4C Silent p.T543T 0.22 TCGA-GN-A26C-01 2 99778604 99778604 A G LIPT1 Missense_Mutation p.I62V 0.24 tolerated(1) benign(0.001) TCGA-GN-A26C-01 3 100413737 100413737 C T GPR128 Silent p.F762F 0.17 TCGA-GN-A26C-01 3 100645168 100645168 C T ABI3BP Silent p.G86G 0.41 TCGA-GN-A26C-01 3 107491750 107491750 G A BBX Silent p.K394K 0.08 TCGA-GN-A26C-01 3 108072555 108072555 G A HHLA2 Missense_Mutation p.E116K 0.13 deleterious(0.03) benign(0.227) TCGA-GN-A26C-01 3 109047753 109047753 G A DPPA4 Missense_Mutation p.P288S 0.10 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 3 109050829 109050829 C T DPPA4 Silent p.Q76Q 0.18 TCGA-GN-A26C-01 3 11060385 11060385 G A SLC6A1 Splice_Site p.X157_splice 0.28 TCGA-GN-A26C-01 3 11076276 11076276 C T SLC6A1 Silent p.F529F 0.25 TCGA-GN-A26C-01 3 112184974 112184974 G A BTLA Missense_Mutation p.S284F 0.10 deleterious(0) possibly_damaging(0.851) TCGA-GN-A26C-01 3 112337925 112337925 C T CCDC80 Missense_Mutation p.D688N 0.16 tolerated(0.38) probably_damaging(0.95) TCGA-GN-A26C-01 3 11301279 11301279 G A HRH1 Missense_Mutation p.D186N 0.32 tolerated(0.48) benign(0.013) TCGA-GN-A26C-01 3 113172677 113172677 G A SPICE1 Missense_Mutation p.S593L 0.35 tolerated(0.19) benign(0.023) TCGA-GN-A26C-01 3 113300238 113300238 G A SIDT1 Missense_Mutation p.E232K 0.27 tolerated(0.13) benign(0.425) TCGA-GN-A26C-01 3 119263484 119263484 C T CD80 Missense_Mutation p.E111K 0.33 tolerated(0.67) benign(0.003) TCGA-GN-A26C-01 3 119378958 119378958 G A POPDC2 Missense_Mutation p.P105S 0.22 tolerated(0.5) benign(0.001) TCGA-GN-A26C-01 3 119912168 119912168 C A GPR156 Missense_Mutation p.G113W 0.09 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 3 120976111 120976111 G A STXBP5L Missense_Mutation p.R588K 0.15 tolerated(1) benign(0.001) TCGA-GN-A26C-01 3 121100303 121100303 G A STXBP5L Missense_Mutation p.M861I 0.20 tolerated(0.3) benign(0.139) TCGA-GN-A26C-01 3 121126217 121126217 G A STXBP5L Nonsense_Mutation p.W929* 0.19 TCGA-GN-A26C-01 3 121350826 121350826 C T HCLS1 Missense_Mutation p.G443E 0.31 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 3 121354611 121354611 G A HCLS1 Missense_Mutation p.A221V 0.09 tolerated(0.08) possibly_damaging(0.483) TCGA-GN-A26C-01 3 121361820 121361820 G A HCLS1 Silent p.V136V 0.25 TCGA-GN-A26C-01 3 121975937 121975937 C T CASR Silent p.F65F 0.15 TCGA-GN-A26C-01 3 121980902 121980902 G A CASR Silent p.R340R 0.15 TCGA-GN-A26C-01 3 122271276 122271276 G A PARP9 Missense_Mutation p.P401S 0.30 tolerated(0.79) benign(0.007) TCGA-GN-A26C-01 3 123014945 123014945 G A ADCY5 Missense_Mutation p.L1017F 0.14 deleterious(0) possibly_damaging(0.852) TCGA-GN-A26C-01 3 124398310 124398310 G A KALRN Silent p.T744T 0.32 TCGA-GN-A26C-01 3 124449234 124449234 G A UMPS 5'UTR 0.32 TCGA-GN-A26C-01 3 124642388 124642388 G A MUC13 Missense_Mutation p.S207F 0.20 deleterious(0.04) benign(0.275) TCGA-GN-A26C-01 3 124951657 124951657 G A ZNF148 Missense_Mutation p.P638L 0.15 tolerated(0.1) benign(0.004) TCGA-GN-A26C-01 3 126268807 126268807 G A C3orf22 Silent p.F110F 0.13 TCGA-GN-A26C-01 3 127396078 127396078 C T ABTB1 Silent p.L237L 0.36 TCGA-GN-A26C-01 3 12790229 12790229 C T TMEM40 Missense_Mutation p.E46K 0.24 tolerated_low_confidence(0.65) benign(0.012) TCGA-GN-A26C-01 3 129252565 129252565 C T RHO 3'UTR 0.20 TCGA-GN-A26C-01 3 130159097 130159097 G A COL6A5 Missense_Mutation p.R1972Q 0.30 tolerated(0.51) benign(0.002) TCGA-GN-A26C-01 3 130285598 130285598 G A COL6A6 Silent p.G445G 0.14 TCGA-GN-A26C-01 3 130286904 130286904 G A COL6A6 Missense_Mutation p.M619I 0.26 deleterious(0.01) benign(0.049) TCGA-GN-A26C-01 3 130292986 130292986 G A COL6A6 Missense_Mutation p.G1055E 0.19 tolerated(0.47) probably_damaging(0.965) TCGA-GN-A26C-01 3 130308001 130308001 G A COL6A6 Missense_Mutation p.G1398E 0.22 deleterious(0) probably_damaging(0.943) TCGA-GN-A26C-01 3 130312062 130312062 G A COL6A6 Missense_Mutation p.G1479E 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 130743590 130743590 C A ASTE1 Missense_Mutation p.K187N 0.18 deleterious(0.02) benign(0.076) TCGA-GN-A26C-01 3 13376957 13376957 G A NUP210 Silent p.V1280V 0.26 TCGA-GN-A26C-01 3 134079153 134079153 G A AMOTL2 Silent p.L560L 0.15 TCGA-GN-A26C-01 3 13420428 13420428 G A NUP210 Silent p.V343V 0.28 TCGA-GN-A26C-01 3 134851825 134851825 G A EPHB1 Missense_Mutation p.G411R 0.16 deleterious(0) probably_damaging(0.966) TCGA-GN-A26C-01 3 138023816 138023816 C T NME9 Silent p.L169L 0.13 TCGA-GN-A26C-01 3 138183346 138183346 G A ESYT3 Missense_Mutation p.E359K 0.15 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 3 138739176 138739176 C T PRR23B Missense_Mutation p.E110K 0.14 deleterious(0.02) possibly_damaging(0.863) TCGA-GN-A26C-01 3 139279851 139279851 C T NMNAT3 3'UTR 0.30 TCGA-GN-A26C-01 3 143513894 143513894 G A SLC9A9 Missense_Mutation p.S161F 0.13 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 3 14508159 14508159 G A SLC6A6 Splice_Site p.X289_splice 0.24 TCGA-GN-A26C-01 3 14536396 14536396 C T GRIP2 RNA 0.25 TCGA-GN-A26C-01 3 145799564 145799564 C T PLOD2 Missense_Mutation p.R440Q 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 146177721 146177721 G A PLSCR2 Nonsense_Mutation p.Q64* 0.34 TCGA-GN-A26C-01 3 14861600 14861600 C T FGD5 Missense_Mutation p.S341F 0.22 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-GN-A26C-01 3 148916180 148916180 C T CP Missense_Mutation p.G563R 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26C-01 3 149193655 149193655 T C TM4SF4 Missense_Mutation p.C74R 0.57 deleterious(0.03) probably_damaging(0.925) TCGA-GN-A26C-01 3 150176403 150176403 C A TSC22D2 Missense_Mutation p.P775T 0.13 deleterious(0) possibly_damaging(0.641) TCGA-GN-A26C-01 3 151597678 151597678 G A SUCNR1 5'UTR 0.24 TCGA-GN-A26C-01 3 151598689 151598689 C T SUCNR1 Nonsense_Mutation p.R120* 0.29 TCGA-GN-A26C-01 3 154886520 154886520 G A MME Splice_Site p.X639_splice 0.18 TCGA-GN-A26C-01 3 155311961 155311961 G A PLCH1 Missense_Mutation p.S68F 0.17 deleterious(0) probably_damaging(0.99) TCGA-GN-A26C-01 3 155485418 155485418 T C C3orf33 Silent p.V78V 0.14 TCGA-GN-A26C-01 3 155629027 155629027 C T GMPS Missense_Mutation p.S282F 0.22 tolerated(0.08) benign(0.002) TCGA-GN-A26C-01 3 156192535 156192535 C T KCNAB1 Missense_Mutation p.S195F 0.25 deleterious(0) probably_damaging(0.988) TCGA-GN-A26C-01 3 156260949 156260949 G A SSR3 3'UTR 0.25 TCGA-GN-A26C-01 3 15717478 15717478 G A ANKRD28 Silent p.A934A 0.27 TCGA-GN-A26C-01 3 160783332 160783332 G A PPM1L Missense_Mutation p.R239K 0.14 tolerated(0.12) benign(0.326) TCGA-GN-A26C-01 3 164700134 164700134 G A SI Missense_Mutation p.S1771F 0.24 tolerated(0.59) benign(0.001) TCGA-GN-A26C-01 3 164724631 164724631 C T SI Missense_Mutation p.G1460E 0.17 deleterious(0) possibly_damaging(0.832) TCGA-GN-A26C-01 3 164725726 164725726 C T SI Missense_Mutation p.E1414K 0.14 tolerated(0.86) benign(0.007) TCGA-GN-A26C-01 3 164748504 164748504 C G SI Missense_Mutation p.R963T 0.18 tolerated(0.08) benign(0.065) TCGA-GN-A26C-01 3 164773033 164773033 T C SI Silent p.A487A 0.12 TCGA-GN-A26C-01 3 168834404 168834404 G A MECOM Missense_Mutation p.S296F 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 3 170216597 170216597 C A SLC7A14 Silent p.G206G 0.21 TCGA-GN-A26C-01 3 172365750 172365750 G A NCEH1 Missense_Mutation p.P130L 0.11 tolerated(0.09) benign(0.047) TCGA-GN-A26C-01 3 173998307 173998307 C T NLGN1 Silent p.F562F 0.21 TCGA-GN-A26C-01 3 183910650 183910650 C T ABCF3 Silent p.V572V 0.29 TCGA-GN-A26C-01 3 184042702 184042702 G A EIF4G1 Missense_Mutation p.E893K 0.32 deleterious(0.03) probably_damaging(0.975) TCGA-GN-A26C-01 3 184043652 184043652 C T EIF4G1 Silent p.P1052P 0.24 TCGA-GN-A26C-01 3 184059642 184059642 C T FAM131A Intron 0.13 TCGA-GN-A26C-01 3 184062320 184062320 G A FAM131A Silent p.Q221Q 0.11 TCGA-GN-A26C-01 3 184062321 184062321 G A FAM131A Missense_Mutation p.D222N 0.11 deleterious(0.01) benign(0.426) TCGA-GN-A26C-01 3 189584548 189584548 G A TP63 Missense_Mutation p.G282R 0.14 deleterious(0.03) possibly_damaging(0.486) TCGA-GN-A26C-01 3 189587161 189587161 G A TP63 Missense_Mutation p.R393Q 0.33 deleterious(0) probably_damaging(0.941) TCGA-GN-A26C-01 3 190347309 190347309 G A IL1RAP Intron 0.27 TCGA-GN-A26C-01 3 191861746 191861746 G A FGF12 3'UTR 0.35 TCGA-GN-A26C-01 3 191861769 191861769 G A FGF12 3'UTR 0.33 TCGA-GN-A26C-01 3 191888415 191888415 C T FGF12 Missense_Mutation p.E149K 0.18 deleterious(0) probably_damaging(0.984) TCGA-GN-A26C-01 3 193185121 193185121 G A ATP13A4 Silent p.A366A 0.30 TCGA-GN-A26C-01 3 194371730 194371730 G A LSG1 Silent p.L433L 0.16 TCGA-GN-A26C-01 3 194373548 194373548 G A LSG1 Silent p.S361S 0.15 TCGA-GN-A26C-01 3 195492185 195492185 C T MUC4 Nonsense_Mutation p.W4585* 0.16 TCGA-GN-A26C-01 3 195711125 195711125 A G SDHAP1 RNA 0.11 TCGA-GN-A26C-01 3 196449298 196449298 C T PIGX Silent p.I63I 0.21 TCGA-GN-A26C-01 3 197238901 197238901 G A BDH1 Silent p.I299I 0.33 TCGA-GN-A26C-01 3 19975029 19975029 G A EFHB Missense_Mutation p.P161L 0.23 deleterious_low_confidence(0) benign(0.06) TCGA-GN-A26C-01 3 25832607 25832607 C T OXSM Silent p.F32F 0.30 TCGA-GN-A26C-01 3 27203969 27203969 C T NEK10 Missense_Mutation p.R998Q 0.24 tolerated(0.15) benign(0.003) TCGA-GN-A26C-01 3 27332781 27332781 C T NEK10 Missense_Mutation p.G526E 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 2787248 2787248 C T CNTN4 Silent p.F75F 0.18 TCGA-GN-A26C-01 3 28454855 28454855 G A ZCWPW2 Missense_Mutation p.G99E 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 3030121 3030121 G A CNTN4 Missense_Mutation p.G484E 0.21 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 3 30769672 30769672 G A GADL1 3'UTR 0.24 TCGA-GN-A26C-01 3 30769839 30769839 C T GADL1 Silent p.R487R 0.30 TCGA-GN-A26C-01 3 30819706 30819706 C T GADL1 Missense_Mutation p.E453K 0.25 tolerated(0.29) benign(0.002) TCGA-GN-A26C-01 3 32932358 32932358 C T TRIM71 Silent p.P554P 0.29 TCGA-GN-A26C-01 3 35780915 35780915 C T ARPP21 Missense_Mutation p.P585L 0.20 tolerated(0.76) benign(0.06) TCGA-GN-A26C-01 3 35781015 35781015 C T ARPP21 Silent p.V618V 0.21 TCGA-GN-A26C-01 3 38061693 38061693 G A PLCD1 Missense_Mutation p.P83L 0.33 tolerated(0.08) benign(0.001) TCGA-GN-A26C-01 3 38357167 38357167 C T SLC22A14 Silent p.F499F 0.23 TCGA-GN-A26C-01 3 38622542 38622542 C T SCN5A Silent p.Q1036Q 0.29 TCGA-GN-A26C-01 3 38627476 38627476 G A SCN5A Silent p.I831I 0.24 TCGA-GN-A26C-01 3 38655273 38655273 G A SCN5A Intron 0.17 TCGA-GN-A26C-01 3 38671899 38671899 C T SCN5A Missense_Mutation p.G99S 0.24 deleterious(0.01) possibly_damaging(0.831) TCGA-GN-A26C-01 3 38739124 38739124 G A SCN10A Missense_Mutation p.R1863W 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 38763776 38763776 G A SCN10A Silent p.F1160F 0.15 TCGA-GN-A26C-01 3 38797282 38797282 C T SCN10A Silent p.R486R 0.26 TCGA-GN-A26C-01 3 3887687 3887687 A T LRRN1 Missense_Mutation p.E454D 0.33 tolerated(0.17) benign(0.117) TCGA-GN-A26C-01 3 38888697 38888697 C T SCN11A Missense_Mutation p.D1622N 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 3 38913713 38913713 G A SCN11A Missense_Mutation p.R1156C 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 38968362 38968362 G A SCN11A Silent p.F183F 0.22 TCGA-GN-A26C-01 3 39307245 39307245 G A CX3CR1 Silent p.F284F 0.29 TCGA-GN-A26C-01 3 39374497 39374497 G A CCR8 Silent p.L225L 0.17 TCGA-GN-A26C-01 3 40464885 40464885 G A ENTPD3 Nonsense_Mutation p.W403* 0.22 TCGA-GN-A26C-01 3 42448635 42448635 C T LYZL4 Missense_Mutation p.D37N 0.16 tolerated(0.17) benign(0.015) TCGA-GN-A26C-01 3 43122090 43122090 G A POMGNT2 Silent p.S278S 0.23 TCGA-GN-A26C-01 3 436434 436434 G A CHL1 Silent p.K991K 0.22 TCGA-GN-A26C-01 3 44692677 44692677 T C ZNF35 Missense_Mutation p.S40P 0.17 deleterious_low_confidence(0.01) benign(0.132) TCGA-GN-A26C-01 3 45461192 45461192 C T LARS2 Missense_Mutation p.R163C 0.22 deleterious(0.03) possibly_damaging(0.697) TCGA-GN-A26C-01 3 46244938 46244938 G A CCR1 Silent p.I289I 0.32 TCGA-GN-A26C-01 3 46245133 46245133 C T CCR1 Silent p.K224K 0.12 TCGA-GN-A26C-01 3 46306740 46306740 G A CCR3 Missense_Mutation p.A52T 0.30 tolerated(0.54) benign(0.124) TCGA-GN-A26C-01 3 46401379 46401379 G A CCR2 3'UTR 0.42 TCGA-GN-A26C-01 3 46415098 46415098 G A CCR5 Silent p.R235R 0.34 TCGA-GN-A26C-01 3 46945245 46945245 G A PTH1R 3'UTR 0.22 TCGA-GN-A26C-01 3 47030358 47030358 C T NBEAL2 Missense_Mutation p.P56L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A26C-01 3 47125334 47125334 G A SETD2 Missense_Mutation p.P1979L 0.23 deleterious(0) benign(0.282) TCGA-GN-A26C-01 3 48414250 48414250 C T FBXW12 5'UTR 0.24 TCGA-GN-A26C-01 3 48454559 48454559 G A PLXNB1 Silent p.L1519L 0.33 TCGA-GN-A26C-01 3 48619044 48619044 G A COL7A1 Missense_Mutation p.P1582S 0.21 unknown(0) TCGA-GN-A26C-01 3 49698922 49698922 C T BSN Missense_Mutation p.P3215L 0.27 unknown(0) TCGA-GN-A26C-01 3 49765668 49765668 G A IP6K1 Silent p.P220P 0.19 TCGA-GN-A26C-01 3 49836345 49836345 C T CDHR4 Missense_Mutation p.E137K 0.16 deleterious(0.01) benign(0.168) TCGA-GN-A26C-01 3 49878431 49878431 G A TRAIP Missense_Mutation p.S231F 0.26 deleterious(0.04) benign(0.031) TCGA-GN-A26C-01 3 49898881 49898881 C T CAMKV Silent p.R144R 0.32 TCGA-GN-A26C-01 3 50251628 50251628 G A SLC38A3 RNA 0.26 TCGA-GN-A26C-01 3 50421649 50421649 G A CACNA2D2 Silent p.I210I 0.23 TCGA-GN-A26C-01 3 51393678 51393678 G A DOCK3 Missense_Mutation p.E1470K 0.30 deleterious(0) benign(0.124) TCGA-GN-A26C-01 3 51747141 51747141 G T GRM2 Missense_Mutation p.R368L 0.14 tolerated(0.16) benign(0.255) TCGA-GN-A26C-01 3 51864652 51864652 C T IQCF3 Silent p.I100I 0.20 TCGA-GN-A26C-01 3 51864774 51864774 C T IQCF3 Missense_Mutation p.P141L 0.32 tolerated(0.28) benign(0) TCGA-GN-A26C-01 3 52397079 52397079 C T DNAH1 Silent p.S1721S 0.29 TCGA-GN-A26C-01 3 52417967 52417967 G A DNAH1 Missense_Mutation p.E2748K 0.30 possibly_damaging(0.861) TCGA-GN-A26C-01 3 5244719 5244719 C T EDEM1 Silent p.L309L 0.28 TCGA-GN-A26C-01 3 52456247 52456247 C T PHF7 Silent p.A230A 0.23 TCGA-GN-A26C-01 3 52538484 52538484 C T STAB1 Silent p.G386G 0.25 TCGA-GN-A26C-01 3 52547204 52547204 G A STAB1 Missense_Mutation p.E1073K 0.18 tolerated(0.34) benign(0.026) TCGA-GN-A26C-01 3 52823770 52823770 G A ITIH1 Missense_Mutation p.D741N 0.24 tolerated(0.28) possibly_damaging(0.561) TCGA-GN-A26C-01 3 54930913 54930913 G A CACNA2D3 Intron 0.26 TCGA-GN-A26C-01 3 54930914 54930914 G A CACNA2D3 Intron 0.27 TCGA-GN-A26C-01 3 55922428 55922428 G A ERC2 Silent p.I851I 0.24 TCGA-GN-A26C-01 3 56468714 56468714 C T ERC2 Missense_Mutation p.G108R 0.26 deleterious(0) possibly_damaging(0.871) TCGA-GN-A26C-01 3 56468774 56468774 G A ERC2 Nonsense_Mutation p.R88* 0.23 TCGA-GN-A26C-01 3 56469002 56469002 C T ERC2 Missense_Mutation p.E12K 0.19 deleterious(0.01) benign(0.049) TCGA-GN-A26C-01 3 57294004 57294004 C T APPL1 Missense_Mutation p.R539C 0.24 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 3 58107129 58107129 C T FLNB Missense_Mutation p.R1009W 0.19 tolerated(0.07) probably_damaging(0.924) TCGA-GN-A26C-01 3 58486915 58486915 G A KCTD6 Silent p.R90R 0.26 TCGA-GN-A26C-01 3 58619986 58619986 G A FAM3D 3'UTR 0.26 TCGA-GN-A26C-01 3 62204658 62204658 G A PTPRG Splice_Site p.X763_splice 0.26 TCGA-GN-A26C-01 3 62423848 62423848 G A CADPS Silent p.F1236F 0.20 TCGA-GN-A26C-01 3 63967960 63967960 C T ATXN7 Missense_Mutation p.S284F 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-GN-A26C-01 3 65346891 65346891 C T MAGI1 Missense_Mutation p.G1206D 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 68055884 68055884 C A FAM19A1 Missense_Mutation p.P39T 0.26 tolerated_low_confidence(0.19) benign(0) TCGA-GN-A26C-01 3 69239092 69239092 G A FRMD4B Missense_Mutation p.P576S 0.18 tolerated(0.17) possibly_damaging(0.804) TCGA-GN-A26C-01 3 71026984 71026984 G A FOXP1 Missense_Mutation p.S450L 0.28 deleterious(0.04) possibly_damaging(0.614) TCGA-GN-A26C-01 3 74347186 74347186 C T CNTN3 Missense_Mutation p.E775K 0.22 deleterious(0.01) possibly_damaging(0.832) TCGA-GN-A26C-01 3 77607227 77607227 G A ROBO2 Missense_Mutation p.G471E 0.19 deleterious(0.03) probably_damaging(0.982) TCGA-GN-A26C-01 3 77671460 77671460 G A ROBO2 Missense_Mutation p.E1229K 0.23 tolerated(0.28) benign(0.292) TCGA-GN-A26C-01 3 77695284 77695284 G A ROBO2 3'UTR 0.34 TCGA-GN-A26C-01 3 78683143 78683143 T C ROBO1 Silent p.S1141S 0.23 TCGA-GN-A26C-01 3 78710286 78710286 G A ROBO1 Silent p.I738I 0.31 TCGA-GN-A26C-01 3 89259013 89259013 G A EPHA3 Missense_Mutation p.E53K 0.16 deleterious(0) probably_damaging(0.991) TCGA-GN-A26C-01 3 95374282 95374282 C T MTHFD2P1 RNA 0.18 TCGA-GN-A26C-01 3 96706580 96706580 G A EPHA6 Missense_Mutation p.G286E 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 3 97356793 97356793 C T EPHA6 Missense_Mutation p.S884F 0.18 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 3 97868484 97868484 C T OR5H14 Silent p.F85F 0.37 TCGA-GN-A26C-01 3 97868593 97868593 C T OR5H14 Missense_Mutation p.R122C 0.09 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 3 98217179 98217179 C T OR5K2 Missense_Mutation p.L219F 0.43 tolerated(0.35) benign(0.02) TCGA-GN-A26C-01 3 98538094 98538094 C T DCBLD2 Missense_Mutation p.E347K 0.31 tolerated(0.38) benign(0.008) TCGA-GN-A26C-01 3 99513116 99513116 G A COL8A1 Missense_Mutation p.G124E 0.28 deleterious(0) unknown(0) TCGA-GN-A26C-01 4 100237121 100237121 C T ADH1B Silent p.L167L 0.14 TCGA-GN-A26C-01 4 100534201 100534201 C T MTTP Silent p.F707F 0.17 TCGA-GN-A26C-01 4 110763678 110763678 C T RRH Silent p.I258I 0.18 TCGA-GN-A26C-01 4 111397964 111397964 C T ENPEP Silent p.L132L 0.19 TCGA-GN-A26C-01 4 113347634 113347634 G A ALPK1 Missense_Mutation p.E212K 0.20 deleterious(0) probably_damaging(0.972) TCGA-GN-A26C-01 4 119203159 119203159 C T PRSS12 Missense_Mutation p.D854N 0.11 tolerated(0.15) possibly_damaging(0.881) TCGA-GN-A26C-01 4 122846228 122846228 C T TRPC3 Missense_Mutation p.R374K 0.23 tolerated(0.78) benign(0.01) TCGA-GN-A26C-01 4 123141522 123141522 C T KIAA1109 Missense_Mutation p.A837V 0.14 benign(0.377) TCGA-GN-A26C-01 4 123269732 123269732 A G KIAA1109 Silent p.S4380S 0.26 TCGA-GN-A26C-01 4 126336274 126336274 T G FAT4 Silent p.L2052L 0.10 TCGA-GN-A26C-01 4 126411402 126411402 G A FAT4 Silent p.Q4475Q 0.20 TCGA-GN-A26C-01 4 126412334 126412334 G A FAT4 Missense_Mutation p.G4786E 0.13 probably_damaging(0.999) TCGA-GN-A26C-01 4 138452408 138452408 C T PCDH18 Missense_Mutation p.G279R 0.19 deleterious(0) probably_damaging(0.991) TCGA-GN-A26C-01 4 144918707 144918707 G A GYPB Missense_Mutation p.R86C 0.16 tolerated(0.17) unknown(0) TCGA-GN-A26C-01 4 152200991 152200991 G A PRSS48 Silent p.Q32Q 0.12 TCGA-GN-A26C-01 4 15444303 15444303 C T C1QTNF7 Silent p.F257F 0.14 TCGA-GN-A26C-01 4 157689065 157689065 C T PDGFC Missense_Mutation p.E261K 0.17 tolerated(0.06) probably_damaging(0.931) TCGA-GN-A26C-01 4 159520547 159520547 G A RXFP1 Missense_Mutation p.R119Q 0.17 tolerated(0.56) benign(0.004) TCGA-GN-A26C-01 4 159573222 159573222 C T RXFP1 3'UTR 0.17 TCGA-GN-A26C-01 4 164246712 164246712 G A NPY1R Silent p.L300L 0.23 TCGA-GN-A26C-01 4 164272660 164272660 T A NPY5R Nonsense_Mutation p.L412* 0.15 TCGA-GN-A26C-01 4 164394129 164394129 G A TKTL2 Missense_Mutation p.P253L 0.13 deleterious(0.02) probably_damaging(0.984) TCGA-GN-A26C-01 4 165962219 165962219 G A TRIM60 Missense_Mutation p.R332K 0.17 tolerated(0.19) benign(0.309) TCGA-GN-A26C-01 4 166924569 166924569 G A TLL1 Missense_Mutation p.G220E 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-GN-A26C-01 4 169098892 169098892 G A ANXA10 Missense_Mutation p.G161E 0.18 deleterious(0) possibly_damaging(0.856) TCGA-GN-A26C-01 4 169336629 169336629 A T DDX60L Missense_Mutation p.I970K 0.23 deleterious(0) benign(0.323) TCGA-GN-A26C-01 4 175580240 175580240 C G GLRA3 Missense_Mutation p.E346Q 0.08 deleterious(0.05) possibly_damaging(0.583) TCGA-GN-A26C-01 4 175899176 175899176 C T ADAM29 3'UTR 0.13 TCGA-GN-A26C-01 4 177109326 177109326 G A SPATA4 Missense_Mutation p.A250V 0.09 tolerated(0.3) benign(0.003) TCGA-GN-A26C-01 4 183522226 183522226 G A TENM3 Missense_Mutation p.A221T 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-GN-A26C-01 4 185724548 185724548 T G ACSL1 Missense_Mutation p.T41P 0.20 tolerated(0.16) possibly_damaging(0.851) TCGA-GN-A26C-01 4 187454939 187454939 G A MTNR1A Silent p.F319F 0.15 TCGA-GN-A26C-01 4 189012597 189012597 C T TRIML2 Missense_Mutation p.G365E 0.22 tolerated(0.85) possibly_damaging(0.638) TCGA-GN-A26C-01 4 189012810 189012810 G A TRIML2 Missense_Mutation p.S294L 0.22 tolerated(0.53) possibly_damaging(0.843) TCGA-GN-A26C-01 4 189068239 189068239 G A TRIML1 Missense_Mutation p.D374N 0.19 tolerated(0.1) probably_damaging(0.917) TCGA-GN-A26C-01 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.20 deleterious(0) possibly_damaging(0.756) TCGA-GN-A26C-01 4 20620397 20620397 C T SLIT2 Missense_Mutation p.S1452F 0.23 tolerated(0.1) possibly_damaging(0.553) TCGA-GN-A26C-01 4 25671398 25671398 G A SLC34A2 Silent p.K255K 0.16 TCGA-GN-A26C-01 4 25678030 25678030 C T SLC34A2 Missense_Mutation p.R578C 0.22 deleterious(0.04) benign(0.032) TCGA-GN-A26C-01 4 25780821 25780821 A T SEL1L3 Nonsense_Mutation p.L821* 0.13 TCGA-GN-A26C-01 4 26483204 26483204 C T CCKAR 3'UTR 0.10 TCGA-GN-A26C-01 4 31144234 31144234 C T PCDH7 Silent p.F1177F 0.19 TCGA-GN-A26C-01 4 3176451 3176451 G C HTT Missense_Mutation p.W1390C 0.16 probably_damaging(0.984) TCGA-GN-A26C-01 4 3319322 3319322 C T RGS12 Silent p.P475P 0.14 TCGA-GN-A26C-01 4 3445868 3445868 C T HGFAC Missense_Mutation p.T193I 0.40 deleterious(0) probably_damaging(0.921) TCGA-GN-A26C-01 4 3445869 3445869 C T HGFAC Silent p.T193T 0.40 TCGA-GN-A26C-01 4 38829376 38829376 C T TLR6 Silent p.K573K 0.18 TCGA-GN-A26C-01 4 38942609 38942609 C T FAM114A1 Silent p.V519V 0.19 TCGA-GN-A26C-01 4 39408668 39408668 G A KLB Silent p.G33G 0.16 TCGA-GN-A26C-01 4 39739052 39739052 C T UBE2K Nonsense_Mutation p.Q26* 0.16 TCGA-GN-A26C-01 4 40439833 40439833 G A RBM47 Missense_Mutation p.P360S 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A26C-01 4 41607998 41607998 G A LIMCH1 Missense_Mutation p.G155R 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 4 41747901 41747901 G A PHOX2B Missense_Mutation p.P290S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-GN-A26C-01 4 42080259 42080259 C T SLC30A9 Silent p.L527L 0.18 TCGA-GN-A26C-01 4 42403402 42403402 C T SHISA3 Silent p.F217F 0.11 TCGA-GN-A26C-01 4 47901422 47901422 G A NFXL1 Missense_Mutation p.P264L 0.28 tolerated(0.23) benign(0.04) TCGA-GN-A26C-01 4 47939399 47939399 C T CNGA1 Missense_Mutation p.R440K 0.19 tolerated(0.63) benign(0.003) TCGA-GN-A26C-01 4 48422161 48422161 C T SLAIN2 Silent p.F460F 0.09 TCGA-GN-A26C-01 4 4864760 4864760 G A MSX1 Missense_Mutation p.G268S 0.30 tolerated(0.25) benign(0.042) TCGA-GN-A26C-01 4 56883940 56883940 C T CEP135 Missense_Mutation p.L977F 0.32 deleterious(0.02) possibly_damaging(0.809) TCGA-GN-A26C-01 4 57797279 57797279 C T REST Missense_Mutation p.P752L 0.17 tolerated_low_confidence(0.07) benign(0.005) TCGA-GN-A26C-01 4 65274970 65274970 G A TECRL Missense_Mutation p.H34Y 0.19 tolerated_low_confidence(0.36) benign(0.075) TCGA-GN-A26C-01 4 69202762 69202762 G A YTHDC1 Missense_Mutation p.S289L 0.13 deleterious(0.01) possibly_damaging(0.622) TCGA-GN-A26C-01 4 69343208 69343208 G A TMPRSS11E Missense_Mutation p.D277N 0.19 deleterious(0) probably_damaging(0.97) TCGA-GN-A26C-01 4 69431373 69431373 C T UGT2B17 Missense_Mutation p.D264N 0.34 tolerated(0.06) possibly_damaging(0.503) TCGA-GN-A26C-01 4 70156375 70156375 C T UGT2B28 Missense_Mutation p.H386Y 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A26C-01 4 7026734 7026734 C T TBC1D14 Silent p.I587I 0.23 TCGA-GN-A26C-01 4 70359453 70359453 G A UGT2B4 Silent p.F276F 0.21 TCGA-GN-A26C-01 4 72317009 72317009 G A SLC4A4 Missense_Mutation p.R438Q 0.28 deleterious(0.02) possibly_damaging(0.531) TCGA-GN-A26C-01 4 76804159 76804159 C T PPEF2 Missense_Mutation p.D285N 0.19 tolerated(0.13) probably_damaging(1) TCGA-GN-A26C-01 4 76812837 76812837 G A PPEF2 Missense_Mutation p.L69F 0.19 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 4 79458181 79458181 C T FRAS1 Missense_Mutation p.P3709S 0.15 probably_damaging(0.96) TCGA-GN-A26C-01 4 81966905 81966905 A T BMP3 Missense_Mutation p.R110S 0.14 tolerated(0.7) benign(0) TCGA-GN-A26C-01 4 82010918 82010918 G A PRKG2 Missense_Mutation p.P745S 0.16 tolerated(0.06) probably_damaging(0.976) TCGA-GN-A26C-01 4 82064053 82064053 C T PRKG2 Missense_Mutation p.M434I 0.18 tolerated(0.37) benign(0.009) TCGA-GN-A26C-01 4 82125861 82125861 G A PRKG2 Missense_Mutation p.S114F 0.14 deleterious(0.03) possibly_damaging(0.553) TCGA-GN-A26C-01 4 8588947 8588947 C T GPR78 Missense_Mutation p.P317S 0.15 tolerated(0.91) benign(0.038) TCGA-GN-A26C-01 4 8601244 8601244 C T CPZ Intron 0.17 TCGA-GN-A26C-01 4 88532057 88532057 G A DSPP 5'UTR 0.17 TCGA-GN-A26C-01 4 887176 887176 G A GAK Missense_Mutation p.P327S 0.19 tolerated(0.07) possibly_damaging(0.766) TCGA-GN-A26C-01 4 89039317 89039317 C T ABCG2 Missense_Mutation p.G262E 0.19 deleterious(0) probably_damaging(0.984) TCGA-GN-A26C-01 4 89599133 89599133 A C HERC3 Missense_Mutation p.N682H 0.16 tolerated(0.43) probably_damaging(0.935) TCGA-GN-A26C-01 4 89671688 89671688 G T FAM13A Missense_Mutation p.D609E 0.16 tolerated(1) benign(0.011) TCGA-GN-A26C-01 4 90844324 90844324 G A MMRN1 Missense_Mutation p.E286K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A26C-01 4 95503874 95503874 T - PDLIM5 Intron 0.12 TCGA-GN-A26C-01 4 9557802 9557802 G A MIR548I2 RNA 0.11 TCGA-GN-A26C-01 4 96137323 96137323 C T UNC5C Missense_Mutation p.G562E 0.23 tolerated(0.12) probably_damaging(0.999) TCGA-GN-A26C-01 5 101572556 101572556 C T SLCO4C1 3'UTR 0.18 TCGA-GN-A26C-01 5 11082926 11082926 T A CTNND2 Missense_Mutation p.K890N 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 112176564 112176564 C T APC Missense_Mutation p.S1758F 0.12 possibly_damaging(0.488) TCGA-GN-A26C-01 5 114860413 114860413 G - FEM1C Frame_Shift_Del p.F483Sfs*15 0.09 TCGA-GN-A26C-01 5 118485689 118485689 C T DMXL1 Silent p.F1389F 0.24 TCGA-GN-A26C-01 5 118728837 118728837 G A TNFAIP8 Missense_Mutation p.D120N 0.15 deleterious(0) benign(0.045) TCGA-GN-A26C-01 5 118872209 118872209 C T HSD17B4 Silent p.F720F 0.14 TCGA-GN-A26C-01 5 120021869 120021869 C T PRR16 Missense_Mutation p.P104L 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 121758579 121758579 G A SNCAIP Nonsense_Mutation p.W49* 0.15 TCGA-GN-A26C-01 5 121767676 121767676 G A SNCAIP Missense_Mutation p.E399K 0.28 deleterious(0.04) possibly_damaging(0.842) TCGA-GN-A26C-01 5 126774128 126774128 C T MEGF10 Intron 0.16 TCGA-GN-A26C-01 5 127681084 127681084 C T FBN2 Missense_Mutation p.R1061Q 0.18 tolerated(0.1) benign(0.042) TCGA-GN-A26C-01 5 131303700 131303700 G A ACSL6 Missense_Mutation p.P510L 0.16 deleterious(0.02) probably_damaging(1) TCGA-GN-A26C-01 5 131303701 131303701 G A ACSL6 Missense_Mutation p.P510S 0.16 tolerated(0.1) probably_damaging(1) TCGA-GN-A26C-01 5 131543475 131543475 G A P4HA2 Missense_Mutation p.P336S 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 132232717 132232717 G A AFF4 Silent p.T535T 0.30 TCGA-GN-A26C-01 5 132232718 132232718 G A AFF4 Missense_Mutation p.T535I 0.30 tolerated(0.09) benign(0.29) TCGA-GN-A26C-01 5 134907539 134907539 C T CXCL14 3'UTR 0.16 TCGA-GN-A26C-01 5 135276989 135276989 G A FBXL21 RNA 0.15 TCGA-GN-A26C-01 5 13701430 13701430 A T DNAH5 Missense_Mutation p.F4485Y 0.20 benign(0.418) TCGA-GN-A26C-01 5 137206604 137206604 C T MYOT Silent p.T88T 0.15 TCGA-GN-A26C-01 5 137235301 137235301 G A PKD2L2 Silent p.S207S 0.13 TCGA-GN-A26C-01 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.20 TCGA-GN-A26C-01 5 137680962 137680967 CCTGGC - FAM53C In_Frame_Del p.L198_A199del 0.08 TCGA-GN-A26C-01 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.12 TCGA-GN-A26C-01 5 137727023 137727023 C T KDM3B Silent p.L568L 0.30 TCGA-GN-A26C-01 5 138614540 138614540 C T SNORA74A RNA 0.20 TCGA-GN-A26C-01 5 139060648 139060648 C T CXXC5 Silent p.L180L 0.28 TCGA-GN-A26C-01 5 139216584 139216584 G A PSD2 Missense_Mutation p.R531K 0.29 tolerated(0.77) benign(0.393) TCGA-GN-A26C-01 5 139508114 139508114 C T IGIP Missense_Mutation p.T18I 0.11 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-GN-A26C-01 5 140176933 140176933 G T PCDHA2 Missense_Mutation p.G795V 0.14 deleterious_low_confidence(0.03) benign(0.004) TCGA-GN-A26C-01 5 140181661 140181661 C T PCDHA3 Silent p.F293F 0.23 TCGA-GN-A26C-01 5 140207901 140207901 G A PCDHA6 Silent p.L75L 0.17 TCGA-GN-A26C-01 5 140208462 140208462 C T PCDHA6 Silent p.I262I 0.15 TCGA-GN-A26C-01 5 140389223 140389223 G A PCDHAC1 Missense_Mutation p.G865R 0.18 tolerated(0.06) possibly_damaging(0.726) TCGA-GN-A26C-01 5 140481317 140481317 G A PCDHB3 Missense_Mutation p.E362K 0.22 deleterious_low_confidence(0.01) benign(0.163) TCGA-GN-A26C-01 5 140516557 140516557 C T PCDHB5 Missense_Mutation p.A514V 0.19 deleterious_low_confidence(0.03) benign(0.068) TCGA-GN-A26C-01 5 140530902 140530902 C T PCDHB6 Missense_Mutation p.P355L 0.20 deleterious_low_confidence(0.02) benign(0.098) TCGA-GN-A26C-01 5 140558927 140558927 A G PCDHB8 Missense_Mutation p.M438V 0.05 tolerated_low_confidence(0.08) benign(0) TCGA-GN-A26C-01 5 140573174 140573174 C T PCDHB10 Missense_Mutation p.S350L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-GN-A26C-01 5 140574325 140574325 T A PCDHB10 Missense_Mutation p.F734I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.591) TCGA-GN-A26C-01 5 1406321 1406321 G C SLC6A3 Silent p.V527V 0.20 TCGA-GN-A26C-01 5 140725700 140725700 C T PCDHGA3 Silent p.V700V 0.16 TCGA-GN-A26C-01 5 140731113 140731113 C T PCDHGB1 Missense_Mutation p.S429F 0.14 deleterious(0.02) benign(0.168) TCGA-GN-A26C-01 5 140792946 140792946 C T PCDHGA10 Silent p.V68V 0.22 TCGA-GN-A26C-01 5 140793565 140793565 G A PCDHGA10 Missense_Mutation p.E275K 0.18 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-GN-A26C-01 5 140793982 140793982 C T PCDHGA10 Missense_Mutation p.L414F 0.13 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-GN-A26C-01 5 140798782 140798782 C T PCDHGB7 Silent p.F452F 0.23 TCGA-GN-A26C-01 5 140802612 140802612 C T PCDHGA11 Silent p.S606S 0.14 TCGA-GN-A26C-01 5 141517330 141517330 C T NDFIP1 Silent p.F134F 0.16 TCGA-GN-A26C-01 5 141694238 141694238 G A SPRY4 Missense_Mutation p.P169S 0.20 tolerated(0.18) benign(0.054) TCGA-GN-A26C-01 5 142513590 142513590 A T ARHGAP26 Missense_Mutation p.K586M 0.20 tolerated(0.1) possibly_damaging(0.781) TCGA-GN-A26C-01 5 14369570 14369570 G A TRIO Missense_Mutation p.E1052K 0.14 benign(0.068) TCGA-GN-A26C-01 5 145013 145013 C G PLEKHG4B Missense_Mutation p.S272C 0.17 tolerated(0.11) probably_damaging(0.922) TCGA-GN-A26C-01 5 145317495 145317495 G A SH3RF2 Missense_Mutation p.D2N 0.18 deleterious(0.01) possibly_damaging(0.665) TCGA-GN-A26C-01 5 145843255 145843255 C T TCERG1 Missense_Mutation p.P345L 0.14 deleterious(0.02) unknown(0) TCGA-GN-A26C-01 5 14608964 14608964 C T FAM105A Silent p.F245F 0.10 TCGA-GN-A26C-01 5 146773564 146773564 C T DPYSL3 3'UTR 0.18 TCGA-GN-A26C-01 5 147261022 147261022 C T SCGB3A2 Silent p.L23L 0.16 TCGA-GN-A26C-01 5 147481466 147481466 C T SPINK5 Silent p.A475A 0.17 TCGA-GN-A26C-01 5 147499601 147499601 G A SPINK5 Missense_Mutation p.M781I 0.27 deleterious(0.03) possibly_damaging(0.702) TCGA-GN-A26C-01 5 147695277 147695277 G A SPINK7 3'UTR 0.18 TCGA-GN-A26C-01 5 148579908 148579908 C T ABLIM3 Missense_Mutation p.T122I 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 5 149240503 149240503 G C PDE6A Silent p.P846P 0.17 TCGA-GN-A26C-01 5 149449570 149449570 C T CSF1R Missense_Mutation p.S459N 0.17 tolerated(0.33) probably_damaging(0.952) TCGA-GN-A26C-01 5 149771578 149771578 C T TCOF1 Missense_Mutation p.A1119V 0.18 tolerated(0.05) benign(0.09) TCGA-GN-A26C-01 5 150277716 150277716 G A ZNF300 Missense_Mutation p.S74F 0.32 tolerated(1) possibly_damaging(0.654) TCGA-GN-A26C-01 5 150578636 150578636 C T CCDC69 Missense_Mutation p.E81K 0.13 tolerated(0.28) possibly_damaging(0.705) TCGA-GN-A26C-01 5 150701594 150701594 C T SLC36A2 Intron 0.11 TCGA-GN-A26C-01 5 150906861 150906861 G A FAT2 Silent p.I3414I 0.15 TCGA-GN-A26C-01 5 152870347 152870347 G A GRIA1 5'Flank 0.11 TCGA-GN-A26C-01 5 152870366 152870366 G A GRIA1 5'Flank 0.12 TCGA-GN-A26C-01 5 152870511 152870511 C T GRIA1 5'Flank 0.15 TCGA-GN-A26C-01 5 153407730 153407730 G A FAM114A2 Silent p.N203N 0.11 TCGA-GN-A26C-01 5 154292583 154292583 G A GEMIN5 Missense_Mutation p.S624F 0.21 deleterious(0.01) possibly_damaging(0.498) TCGA-GN-A26C-01 5 154308218 154308218 C T GEMIN5 Silent p.G261G 0.18 TCGA-GN-A26C-01 5 154308219 154308219 C T GEMIN5 Missense_Mutation p.G261E 0.21 tolerated(0.05) benign(0.09) TCGA-GN-A26C-01 5 156381593 156381593 G A TIMD4 Missense_Mutation p.S78L 0.17 deleterious(0.04) benign(0.019) TCGA-GN-A26C-01 5 156479658 156479658 G A HAVCR1 Silent p.V129V 0.18 TCGA-GN-A26C-01 5 156589408 156589408 C T FAM71B 3'UTR 0.15 TCGA-GN-A26C-01 5 156752617 156752617 C T CYFIP2 Silent p.I625I 0.19 TCGA-GN-A26C-01 5 156752644 156752644 G A CYFIP2 Missense_Mutation p.M634I 0.13 tolerated(0.34) benign(0.208) TCGA-GN-A26C-01 5 156816394 156816394 C T CYFIP2 Silent p.F1109F 0.18 TCGA-GN-A26C-01 5 16067614 16067614 G A MARCH11 Missense_Mutation p.S392L 0.19 deleterious(0) possibly_damaging(0.615) TCGA-GN-A26C-01 5 161128565 161128565 C T GABRA6 Missense_Mutation p.S383L 0.13 tolerated(0.3) benign(0.049) TCGA-GN-A26C-01 5 167420062 167420062 G A TENM2 Missense_Mutation p.R354K 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-GN-A26C-01 5 167850856 167850856 G A WWC1 Missense_Mutation p.M531I 0.17 tolerated(0.16) possibly_damaging(0.557) TCGA-GN-A26C-01 5 168098445 168098445 C T SLIT3 Silent p.T1295T 0.17 TCGA-GN-A26C-01 5 168201350 168201350 C T SLIT3 Silent p.R395R 0.17 TCGA-GN-A26C-01 5 168233455 168233455 C T SLIT3 Missense_Mutation p.E311K 0.15 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 169122834 169122834 G A DOCK2 Missense_Mutation p.D291N 0.15 deleterious(0.04) benign(0.091) TCGA-GN-A26C-01 5 169127124 169127124 C T DOCK2 Silent p.F413F 0.15 TCGA-GN-A26C-01 5 170232728 170232728 G A GABRP Missense_Mutation p.D184N 0.14 tolerated(0.58) probably_damaging(0.966) TCGA-GN-A26C-01 5 170667947 170667947 C T RANBP17 Missense_Mutation p.S813F 0.18 deleterious(0.03) possibly_damaging(0.642) TCGA-GN-A26C-01 5 171766376 171766376 G A SH3PXD2B Missense_Mutation p.P578L 0.16 deleterious(0.05) benign(0.005) TCGA-GN-A26C-01 5 175111126 175111126 C T HRH2 Missense_Mutation p.T297I 0.17 tolerated(0.13) benign(0.04) TCGA-GN-A26C-01 5 175530253 175530253 G A FAM153B Missense_Mutation p.E153K 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.828) TCGA-GN-A26C-01 5 176016373 176016373 A G CDHR2 Silent p.Q1017Q 0.12 TCGA-GN-A26C-01 5 176316426 176316426 G A HK3 Silent p.F290F 0.20 TCGA-GN-A26C-01 5 176931822 176931822 G A DOK3 Silent p.I245I 0.22 TCGA-GN-A26C-01 5 177686725 177686725 C T COL23A1 Silent p.K242K 0.22 TCGA-GN-A26C-01 5 177690259 177690259 G A COL23A1 Missense_Mutation p.P197S 0.23 deleterious(0.02) unknown(0) TCGA-GN-A26C-01 5 178392201 178392201 C T ZNF454 Missense_Mutation p.H266Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 178507101 178507101 C T ZNF354C 3'UTR 0.16 TCGA-GN-A26C-01 5 179564661 179564661 G A RASGEF1C Missense_Mutation p.R77W 0.27 deleterious(0.01) benign(0.345) TCGA-GN-A26C-01 5 180043924 180043924 C T FLT4 Silent p.G1024G 0.19 TCGA-GN-A26C-01 5 180047284 180047284 C T FLT4 Missense_Mutation p.G811S 0.12 deleterious(0.05) benign(0.252) TCGA-GN-A26C-01 5 23527385 23527385 A C PRDM9 Missense_Mutation p.S730R 0.29 tolerated(0.06) benign(0.116) TCGA-GN-A26C-01 5 26885949 26885949 C T CDH9 Silent p.R552R 0.13 TCGA-GN-A26C-01 5 33576821 33576821 C T ADAMTS12 Missense_Mutation p.E1104K 0.18 tolerated(0.42) benign(0.004) TCGA-GN-A26C-01 5 35712950 35712950 G A SPEF2 Missense_Mutation p.G959E 0.17 tolerated(0.51) benign(0.021) TCGA-GN-A26C-01 5 35876382 35876382 G A IL7R Missense_Mutation p.E392K 0.25 tolerated(0.19) benign(0.203) TCGA-GN-A26C-01 5 35954270 35954270 G A UGT3A1 3'UTR 0.25 TCGA-GN-A26C-01 5 36049378 36049378 G A UGT3A2 Silent p.F152F 0.26 TCGA-GN-A26C-01 5 37061013 37061013 G A NIPBL Missense_Mutation p.G2585R 0.28 tolerated(0.44) benign(0.051) TCGA-GN-A26C-01 5 38427148 38427148 G A EGFLAM Silent p.L616L 0.18 TCGA-GN-A26C-01 5 38458461 38458461 C T EGFLAM Silent p.F920F 0.15 TCGA-GN-A26C-01 5 38530672 38530672 G A LIFR Silent p.F26F 0.17 TCGA-GN-A26C-01 5 39285317 39285317 A T C9 Missense_Mutation p.F555Y 0.15 deleterious_low_confidence(0) benign(0.02) TCGA-GN-A26C-01 5 40832606 40832606 T C RPL37 Silent p.%3D 0.19 TCGA-GN-A26C-01 5 40936505 40936505 G A C7 Missense_Mutation p.E116K 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 5 41160246 41160246 G A C6 Missense_Mutation p.S561F 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A26C-01 5 41201710 41201710 G A C6 Silent p.L84L 0.23 TCGA-GN-A26C-01 5 41749663 41749663 C T OXCT1 Missense_Mutation p.G462E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 5 42718993 42718993 G A GHR Missense_Mutation p.E462K 0.16 tolerated(0.61) benign(0.04) TCGA-GN-A26C-01 5 45262164 45262164 C T HCN1 Silent p.Q844Q 0.19 TCGA-GN-A26C-01 5 49699234 49699234 C T EMB Missense_Mutation p.E219K 0.22 tolerated(0.14) possibly_damaging(0.69) TCGA-GN-A26C-01 5 52235458 52235458 C T ITGA1 Silent p.F1039F 0.12 TCGA-GN-A26C-01 5 55204271 55204271 C T IL31RA Intron 0.33 TCGA-GN-A26C-01 5 56777658 56777658 C T ACTBL2 Missense_Mutation p.D293N 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.708) TCGA-GN-A26C-01 5 63802514 63802514 C T RGS7BP Silent p.F21F 0.20 TCGA-GN-A26C-01 5 6652106 6652106 C T SRD5A1 Missense_Mutation p.P149S 0.14 deleterious(0.05) probably_damaging(0.951) TCGA-GN-A26C-01 5 70845412 70845412 C T BDP1 Missense_Mutation p.T2325I 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-GN-A26C-01 5 70922545 70922545 A T MCCC2 Nonsense_Mutation p.K235* 0.19 TCGA-GN-A26C-01 5 74646750 74646750 C T HMGCR Missense_Mutation p.S306F 0.22 tolerated(0.06) benign(0.322) TCGA-GN-A26C-01 5 75596726 75596726 G A SV2C Silent p.L603L 0.21 TCGA-GN-A26C-01 5 76251529 76251529 C T CRHBP Missense_Mutation p.H129Y 0.16 deleterious(0) probably_damaging(0.956) TCGA-GN-A26C-01 5 78411640 78411640 G A BHMT Silent p.G28G 0.20 TCGA-GN-A26C-01 5 79025289 79025289 C T CMYA5 Missense_Mutation p.S234L 0.20 possibly_damaging(0.602) TCGA-GN-A26C-01 5 79032934 79032934 G A CMYA5 Missense_Mutation p.M2782I 0.20 benign(0.004) TCGA-GN-A26C-01 5 79089401 79089401 C T CMYA5 Silent p.T3977T 0.17 TCGA-GN-A26C-01 5 80366283 80366283 C T RASGRF2 Intron 0.13 TCGA-GN-A26C-01 5 82808056 82808056 G A VCAN Missense_Mutation p.D295N 0.16 tolerated(0.06) probably_damaging(0.985) TCGA-GN-A26C-01 5 82876171 82876171 C T VCAN Missense_Mutation p.S3370F 0.10 deleterious(0) probably_damaging(0.945) TCGA-GN-A26C-01 5 87492296 87492296 G A TMEM161B Missense_Mutation p.S399F 0.26 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 5 90020657 90020657 G A GPR98 Missense_Mutation p.D3253N 0.17 possibly_damaging(0.811) TCGA-GN-A26C-01 5 90046500 90046500 C T GPR98 Missense_Mutation p.P3703S 0.23 probably_damaging(0.968) TCGA-GN-A26C-01 5 90052412 90052412 G A GPR98 Missense_Mutation p.D3908N 0.24 probably_damaging(0.959) TCGA-GN-A26C-01 5 9202111 9202111 G A SEMA5A Silent p.F296F 0.21 TCGA-GN-A26C-01 5 94248532 94248532 C T MCTP1 Silent p.G500G 0.23 TCGA-GN-A26C-01 5 94248533 94248533 C T MCTP1 Missense_Mutation p.G500E 0.22 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 5 94275843 94275843 C T MCTP1 Missense_Mutation p.G373E 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 5 9629272 9629272 G A TAS2R1 Silent p.F291F 0.19 TCGA-GN-A26C-01 6 106552989 106552989 C T PRDM1 Silent p.I318I 0.38 TCGA-GN-A26C-01 6 107392151 107392151 G A BEND3 Missense_Mutation p.L82F 0.33 tolerated_low_confidence(0.16) benign(0.226) TCGA-GN-A26C-01 6 10775656 10775656 C T MAK Missense_Mutation p.G501E 0.30 deleterious(0.04) benign(0.008) TCGA-GN-A26C-01 6 117232120 117232120 C T RFX6 Missense_Mutation p.S232L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A26C-01 6 117681170 117681170 G A ROS1 Silent p.I1150I 0.28 TCGA-GN-A26C-01 6 128643321 128643321 G A PTPRK Missense_Mutation p.P120S 0.38 deleterious(0) possibly_damaging(0.453) TCGA-GN-A26C-01 6 152737898 152737898 C T SYNE1 Missense_Mutation p.E1892K 0.29 benign(0.229) TCGA-GN-A26C-01 6 154567804 154567804 C T IPCEF1 Missense_Mutation p.G56E 0.31 tolerated(0.23) benign(0.285) TCGA-GN-A26C-01 6 155450882 155450882 C T TIAM2 Silent p.V175V 0.35 TCGA-GN-A26C-01 6 159653882 159653882 G A FNDC1 Missense_Mutation p.G780R 0.33 tolerated_low_confidence(0.1) unknown(0) TCGA-GN-A26C-01 6 160328623 160328623 G A MAS1 Silent p.V212V 0.45 TCGA-GN-A26C-01 6 160905162 160905162 C T LPAL2 RNA 0.30 TCGA-GN-A26C-01 6 165801909 165801909 C T PDE10A Missense_Mutation p.D564N 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-GN-A26C-01 6 168312016 168312016 C T MLLT4 Silent p.V628V 0.20 TCGA-GN-A26C-01 6 170112562 170112562 G A PHF10 Missense_Mutation p.P293S 0.30 tolerated(0.06) possibly_damaging(0.664) TCGA-GN-A26C-01 6 17284914 17284914 C T RBM24 Missense_Mutation p.H107Y 0.31 tolerated(0.22) benign(0.05) TCGA-GN-A26C-01 6 24596520 24596520 C T KIAA0319 Missense_Mutation p.G128R 0.32 deleterious(0.02) probably_damaging(0.973) TCGA-GN-A26C-01 6 24596521 24596521 C T KIAA0319 Silent p.S127S 0.33 TCGA-GN-A26C-01 6 25701565 25701565 C T SCGN 3'UTR 0.30 TCGA-GN-A26C-01 6 25776915 25776915 C T SLC17A4 Silent p.I360I 0.28 TCGA-GN-A26C-01 6 26247196 26247196 G A HIST1H4G Missense_Mutation p.R4W 0.52 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-GN-A26C-01 6 29080091 29080091 C T OR2J3 Missense_Mutation p.R142C 0.34 deleterious(0.04) benign(0.031) TCGA-GN-A26C-01 6 29141830 29141830 C T OR2J2 Missense_Mutation p.R140C 0.35 deleterious(0.04) benign(0.031) TCGA-GN-A26C-01 6 29141959 29141959 C T OR2J2 Missense_Mutation p.P183S 0.35 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 6 29142337 29142337 G A OR2J2 Missense_Mutation p.E309K 0.27 tolerated(0.49) benign(0.073) TCGA-GN-A26C-01 6 30680528 30680528 G A MDC1 Silent p.S397S 0.36 TCGA-GN-A26C-01 6 30680529 30680529 G A MDC1 Missense_Mutation p.S397F 0.35 deleterious(0.04) possibly_damaging(0.641) TCGA-GN-A26C-01 6 31601235 31601235 C T PRRC2A Nonsense_Mutation p.Q1467* 0.35 TCGA-GN-A26C-01 6 31711946 31711946 C T MSH5 Intron 0.32 TCGA-GN-A26C-01 6 31948456 31948456 C T STK19 Silent p.V313V 0.39 TCGA-GN-A26C-01 6 32029366 32029366 G A TNXB Missense_Mutation p.P2434S 0.37 probably_damaging(0.991) TCGA-GN-A26C-01 6 32041686 32041686 C T RNA5SP206 3'Flank 0.38 TCGA-GN-A26C-01 6 32065731 32065731 G A TNXB Missense_Mutation p.S82F 0.35 probably_damaging(0.983) TCGA-GN-A26C-01 6 32185036 32185036 G A NOTCH4 Silent p.S544S 0.36 TCGA-GN-A26C-01 6 32261273 32261273 C T C6orf10 Missense_Mutation p.G393R 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-GN-A26C-01 6 33248603 33248603 C A WDR46 Missense_Mutation p.W426L 0.59 deleterious(0.05) benign(0.192) TCGA-GN-A26C-01 6 33409391 33409391 C T SYNGAP1 Missense_Mutation p.L717F 0.24 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 6 33693307 33693307 C T IP6K3 Missense_Mutation p.D226N 0.30 deleterious(0.04) benign(0.358) TCGA-GN-A26C-01 6 35210914 35210914 G A SCUBE3 Missense_Mutation p.D604N 0.43 tolerated(0.21) benign(0.199) TCGA-GN-A26C-01 6 36106805 36106805 G A MAPK13 Missense_Mutation p.E331K 0.38 tolerated(0.94) benign(0.001) TCGA-GN-A26C-01 6 36334312 36334312 T A ETV7 3'UTR 0.44 TCGA-GN-A26C-01 6 36454985 36454985 C A KCTD20 3'UTR 0.11 TCGA-GN-A26C-01 6 38941535 38941535 C T DNAH8 Silent p.F3991F 0.30 TCGA-GN-A26C-01 6 39286889 39286889 C T KCNK16 Silent p.V78V 0.38 TCGA-GN-A26C-01 6 41185596 41185596 C T TREML3P RNA 0.33 TCGA-GN-A26C-01 6 41739062 41739062 G A FRS3 Silent p.G258G 0.25 TCGA-GN-A26C-01 6 42987057 42987057 C T KLHDC3 Silent p.A345A 0.43 TCGA-GN-A26C-01 6 43168245 43168245 C T CUL9 Silent p.F1152F 0.38 TCGA-GN-A26C-01 6 43479873 43479873 G A YIPF3 3'UTR 0.33 TCGA-GN-A26C-01 6 46830784 46830784 C T GPR116 Silent p.G680G 0.35 TCGA-GN-A26C-01 6 49403246 49403246 G A MUT Missense_Mutation p.P683S 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A26C-01 6 49604489 49604489 C T RHAG Missense_Mutation p.E13K 0.31 deleterious(0) possibly_damaging(0.682) TCGA-GN-A26C-01 6 49754324 49754324 C T PGK2 Missense_Mutation p.E193K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 6 49803125 49803125 G A CRISP1 Silent p.F218F 0.24 TCGA-GN-A26C-01 6 54805208 54805208 G A FAM83B Missense_Mutation p.R480Q 0.42 deleterious(0.03) possibly_damaging(0.55) TCGA-GN-A26C-01 6 55223835 55223835 G A GFRAL Missense_Mutation p.G284E 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 6 57006175 57006175 C T ZNF451 Missense_Mutation p.L260F 0.24 tolerated(0.09) probably_damaging(1) TCGA-GN-A26C-01 6 7580528 7580528 G A DSP Missense_Mutation p.E1369K 0.41 probably_damaging(0.986) TCGA-GN-A26C-01 6 7582972 7582972 A T DSP Missense_Mutation p.K1826M 0.35 probably_damaging(0.935) TCGA-GN-A26C-01 6 75953512 75953512 G A COX7A2 Missense_Mutation p.P12L 0.34 tolerated_low_confidence(0.2) possibly_damaging(0.722) TCGA-GN-A26C-01 6 76558187 76558187 G A MYO6 Silent p.R339R 0.27 TCGA-GN-A26C-01 6 7880438 7880438 G A BMP6 Missense_Mutation p.M468I 0.39 tolerated(0.24) probably_damaging(0.985) TCGA-GN-A26C-01 6 80626583 80626583 G A ELOVL4 Silent p.T229T 0.38 TCGA-GN-A26C-01 6 84234041 84234041 G A PRSS35 Missense_Mutation p.G294E 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 6 84904664 84904664 G A KIAA1009 Missense_Mutation p.S322L 0.30 tolerated(0.72) benign(0.019) TCGA-GN-A26C-01 6 90572290 90572290 C T CASP8AP2 RNA 0.36 TCGA-GN-A26C-01 6 90572291 90572291 C T CASP8AP2 RNA 0.36 TCGA-GN-A26C-01 6 99828095 99828095 G A COQ3 Missense_Mutation p.S119F 0.30 deleterious(0) possibly_damaging(0.832) TCGA-GN-A26C-01 7 100350119 100350119 C T ZAN Silent p.S797S 0.12 TCGA-GN-A26C-01 7 100681473 100681473 C T MUC17 Missense_Mutation p.S2259L 0.15 unknown(0) TCGA-GN-A26C-01 7 100683264 100683264 G A MUC17 Missense_Mutation p.G2856D 0.30 unknown(0) TCGA-GN-A26C-01 7 100685010 100685010 C T MUC17 Missense_Mutation p.S3438L 0.20 possibly_damaging(0.879) TCGA-GN-A26C-01 7 100685015 100685015 C T MUC17 Missense_Mutation p.P3440S 0.28 possibly_damaging(0.585) TCGA-GN-A26C-01 7 103214583 103214583 C T RELN Silent p.G1489G 0.23 TCGA-GN-A26C-01 7 103214584 103214584 C T RELN Missense_Mutation p.G1489E 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 105656392 105656392 C T CDHR3 Silent p.I449I 0.22 TCGA-GN-A26C-01 7 106840715 106840715 C T HBP1 Missense_Mutation p.P499L 0.12 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 107211656 107211656 C T DUS4L Silent p.A61A 0.32 TCGA-GN-A26C-01 7 107600132 107600132 C T LAMB1 Intron 0.12 TCGA-GN-A26C-01 7 107820675 107820675 G A NRCAM Missense_Mutation p.P948L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A26C-01 7 115889368 115889368 G A TES Intron 0.32 TCGA-GN-A26C-01 7 116409747 116409747 G A MET Missense_Mutation p.G896R 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 117307070 117307070 C T CFTR Missense_Mutation p.P1451S 0.26 tolerated(0.14) benign(0.018) TCGA-GN-A26C-01 7 119914655 119914655 C T KCND2 5'UTR 0.31 TCGA-GN-A26C-01 7 119915781 119915781 C T KCND2 Silent p.I365I 0.22 TCGA-GN-A26C-01 7 120373011 120373011 T A KCND2 Nonsense_Mutation p.C390* 0.13 TCGA-GN-A26C-01 7 120737752 120737752 G A CPED1 Splice_Site p.X206_splice 0.15 TCGA-GN-A26C-01 7 121753694 121753694 G A AASS Missense_Mutation p.P375L 0.38 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 7 123101558 123101558 G A IQUB Silent p.R620R 0.24 TCGA-GN-A26C-01 7 123269251 123269251 C T ASB15 Silent p.S401S 0.37 TCGA-GN-A26C-01 7 126882981 126882981 A G GRM8 Missense_Mutation p.L93P 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 7 127343259 127343259 C T SND1 Missense_Mutation p.P241L 0.32 deleterious(0.01) benign(0.225) TCGA-GN-A26C-01 7 128097527 128097527 C T HILPDA 3'UTR 0.13 TCGA-GN-A26C-01 7 128409230 128409230 G A CALU 3'UTR 0.18 TCGA-GN-A26C-01 7 128409231 128409231 G A CALU 3'UTR 0.19 TCGA-GN-A26C-01 7 128483361 128483361 C T FLNC Silent p.L877L 0.38 TCGA-GN-A26C-01 7 128845101 128845101 C T SMO Missense_Mutation p.R199W 0.32 deleterious(0.01) benign(0.069) TCGA-GN-A26C-01 7 131866140 131866140 C T PLXNA4 Silent p.K1164K 0.25 TCGA-GN-A26C-01 7 131912289 131912289 C T PLXNA4 Missense_Mutation p.M601I 0.26 tolerated(0.25) benign(0.003) TCGA-GN-A26C-01 7 133842793 133842793 G A LRGUK Missense_Mutation p.E226K 0.24 tolerated(0.44) benign(0.002) TCGA-GN-A26C-01 7 137206693 137206693 G A DGKI Missense_Mutation p.R723C 0.31 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 7 137374695 137374695 C T DGKI Missense_Mutation p.S152N 0.11 tolerated(0.45) benign(0.002) TCGA-GN-A26C-01 7 138872190 138872190 C T TTC26 Silent p.V486V 0.32 TCGA-GN-A26C-01 7 139717612 139717612 C T TBXAS1 Silent p.F549F 0.29 TCGA-GN-A26C-01 7 139717613 139717613 C T TBXAS1 Nonsense_Mutation p.Q550* 0.28 TCGA-GN-A26C-01 7 141537045 141537045 C T PRSS37 Missense_Mutation p.R145Q 0.36 tolerated(0.15) possibly_damaging(0.814) TCGA-GN-A26C-01 7 141672504 141672504 G A TAS2R38 Missense_Mutation p.S329F 0.25 tolerated(0.28) benign(0.015) TCGA-GN-A26C-01 7 141752693 141752693 C T MGAM Missense_Mutation p.S1023F 0.34 deleterious(0.02) benign(0.157) TCGA-GN-A26C-01 7 141802445 141802445 G A MGAM Missense_Mutation p.G1764E 0.19 tolerated(0.08) benign(0.137) TCGA-GN-A26C-01 7 142001083 142001083 G A TRBV2 Missense_Mutation p.G26R 0.32 TCGA-GN-A26C-01 7 142223941 142223941 C T TRBV11-1 Missense_Mutation p.D76N 0.13 tolerated(0.15) benign(0.034) TCGA-GN-A26C-01 7 142247184 142247184 C T TRBV7-3 Missense_Mutation p.G91E 0.34 TCGA-GN-A26C-01 7 142423396 142423396 C T TRBV27 Missense_Mutation p.P18S 0.12 TCGA-GN-A26C-01 7 142563888 142563888 C T EPHB6 Missense_Mutation p.R426C 0.21 deleterious(0.02) probably_damaging(0.969) TCGA-GN-A26C-01 7 142572886 142572886 C T TRPV6 Missense_Mutation p.R385Q 0.33 deleterious(0.04) probably_damaging(0.991) TCGA-GN-A26C-01 7 142605774 142605774 C T TRPV5 Missense_Mutation p.R699Q 0.16 tolerated(0.25) benign(0.01) TCGA-GN-A26C-01 7 142625289 142625289 C T TRPV5 Nonsense_Mutation p.W268* 0.13 TCGA-GN-A26C-01 7 142881174 142881174 G A TAS2R39 Silent p.L221L 0.17 TCGA-GN-A26C-01 7 143013335 143013335 G A CLCN1 Silent p.G10G 0.39 TCGA-GN-A26C-01 7 143028350 143028350 C T CLCN1 Silent p.T335T 0.14 TCGA-GN-A26C-01 7 143047514 143047514 C T CLCN1 Missense_Mutation p.S818F 0.27 deleterious(0.02) benign(0.002) TCGA-GN-A26C-01 7 143053666 143053666 C T FAM131B Missense_Mutation p.E354K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A26C-01 7 143141092 143141092 G A TAS2R60 Missense_Mutation p.D183N 0.17 tolerated(1) benign(0) TCGA-GN-A26C-01 7 143141130 143141130 C T TAS2R60 Silent p.F195F 0.17 TCGA-GN-A26C-01 7 143141419 143141419 C T TAS2R60 Missense_Mutation p.H292Y 0.24 deleterious(0.04) benign(0.046) TCGA-GN-A26C-01 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.23 TCGA-GN-A26C-01 7 143771857 143771857 C T OR2A25 Missense_Mutation p.A182V 0.13 tolerated(0.05) probably_damaging(1) TCGA-GN-A26C-01 7 143793110 143793110 C T OR2A12 Missense_Mutation p.L304F 0.34 deleterious(0.03) benign(0.049) TCGA-GN-A26C-01 7 143826417 143826417 C T OR2A14 Missense_Mutation p.S71F 0.17 deleterious(0.04) benign(0.015) TCGA-GN-A26C-01 7 143956059 143956059 G A OR2A7 Silent p.L221L 0.09 TCGA-GN-A26C-01 7 144077105 144077105 C T ARHGEF5 Nonsense_Mutation p.R1584* 0.12 TCGA-GN-A26C-01 7 144097286 144097286 C T NOBOX Missense_Mutation p.G322S 0.19 tolerated(0.2) benign(0.334) TCGA-GN-A26C-01 7 148978672 148978672 C T ZNF783 Silent p.S293S 0.27 TCGA-GN-A26C-01 7 149492727 149492727 C T SSPO RNA 0.26 TCGA-GN-A26C-01 7 149558181 149558181 C T ZNF862 Silent p.I644I 0.53 TCGA-GN-A26C-01 7 150034029 150034029 G A LRRC61 Missense_Mutation p.E27K 0.32 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 7 150174770 150174770 C T GIMAP8 Missense_Mutation p.P634S 0.16 tolerated(0.53) benign(0.047) TCGA-GN-A26C-01 7 150217601 150217601 G A GIMAP7 Missense_Mutation p.S180N 0.32 tolerated(0.05) benign(0.014) TCGA-GN-A26C-01 7 150489175 150489175 C T TMEM176B Missense_Mutation p.R230Q 0.14 tolerated(0.17) benign(0.426) TCGA-GN-A26C-01 7 150555106 150555106 C T AOC1 Silent p.Y516Y 0.33 TCGA-GN-A26C-01 7 150558157 150558157 C T AOC1 Missense_Mutation p.P706S 0.16 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 150649632 150649632 C T KCNH2 Missense_Mutation p.E480K 0.19 deleterious(0) probably_damaging(0.971) TCGA-GN-A26C-01 7 151093145 151093145 G A WDR86 Missense_Mutation p.P148L 0.36 deleterious(0) possibly_damaging(0.501) TCGA-GN-A26C-01 7 151093146 151093146 G A WDR86 Missense_Mutation p.P148S 0.37 tolerated(0.4) benign(0.033) TCGA-GN-A26C-01 7 151167708 151167708 C G RHEB Missense_Mutation p.L137F 0.09 deleterious(0.04) probably_damaging(0.989) TCGA-GN-A26C-01 7 152345647 152345647 G A XRCC2 3'UTR 0.29 TCGA-GN-A26C-01 7 157175009 157175009 C T DNAJB6 Missense_Mutation p.S139L 0.16 deleterious(0.04) benign(0.32) TCGA-GN-A26C-01 7 157926695 157926695 G T PTPRN2 Silent p.L410L 0.10 TCGA-GN-A26C-01 7 157931004 157931004 G A PTPRN2 Missense_Mutation p.R372C 0.15 tolerated(0.06) benign(0.238) TCGA-GN-A26C-01 7 158694445 158694445 G A WDR60 Missense_Mutation p.E359K 0.19 tolerated(0.12) benign(0.002) TCGA-GN-A26C-01 7 20198516 20198516 C T MACC1 Missense_Mutation p.E490K 0.48 tolerated(1) benign(0.007) TCGA-GN-A26C-01 7 20687646 20687646 G A ABCB5 Missense_Mutation p.G384E 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 21781648 21781648 C T DNAH11 Missense_Mutation p.P2680L 0.16 possibly_damaging(0.614) TCGA-GN-A26C-01 7 22349655 22349655 G A RAPGEF5 5'UTR 0.20 TCGA-GN-A26C-01 7 23391164 23391164 G A IGF2BP3 Missense_Mutation p.T148I 0.16 tolerated(0.11) benign(0.027) TCGA-GN-A26C-01 7 23731146 23731146 G A FAM221A Missense_Mutation p.A190T 0.30 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 7 23768756 23768756 G A STK31 Missense_Mutation p.R124Q 0.29 deleterious(0.04) benign(0.229) TCGA-GN-A26C-01 7 29152430 29152430 A T CPVL Missense_Mutation p.L60M 0.31 tolerated(0.11) benign(0.049) TCGA-GN-A26C-01 7 29915505 29915505 G A WIPF3 Silent p.L50L 0.30 TCGA-GN-A26C-01 7 2998208 2998208 G A CARD11 5'UTR 0.36 TCGA-GN-A26C-01 7 30496450 30496450 G A NOD1 Silent p.L30L 0.23 TCGA-GN-A26C-01 7 30825503 30825503 C A FAM188B Missense_Mutation p.H186Q 0.31 tolerated(0.74) benign(0.001) TCGA-GN-A26C-01 7 30825511 30825511 C T FAM188B Missense_Mutation p.P189L 0.29 tolerated(0.23) benign(0.002) TCGA-GN-A26C-01 7 31690788 31690788 G A CCDC129 Silent p.T898T 0.10 TCGA-GN-A26C-01 7 31829815 31829815 G A PDE1C Intron 0.24 TCGA-GN-A26C-01 7 38766557 38766557 G A VPS41 Silent p.F812F 0.13 TCGA-GN-A26C-01 7 41729736 41729736 C T INHBA Missense_Mutation p.E265K 0.21 tolerated_low_confidence(0.21) possibly_damaging(0.595) TCGA-GN-A26C-01 7 4188922 4188922 G A SDK1 Silent p.L1484L 0.19 TCGA-GN-A26C-01 7 4188923 4188923 G A SDK1 Missense_Mutation p.V1485M 0.18 deleterious(0.02) possibly_damaging(0.875) TCGA-GN-A26C-01 7 42065950 42065950 G A GLI3 Silent p.L364L 0.18 TCGA-GN-A26C-01 7 42065951 42065951 G A GLI3 Silent p.I363I 0.17 TCGA-GN-A26C-01 7 43506080 43506080 C A HECW1 Missense_Mutation p.N942K 0.32 deleterious(0.03) benign(0.017) TCGA-GN-A26C-01 7 43846743 43846743 C T BLVRA Missense_Mutation p.S267F 0.31 deleterious(0.01) possibly_damaging(0.86) TCGA-GN-A26C-01 7 44228525 44228525 C T GCK Missense_Mutation p.A10T 0.13 tolerated(0.1) benign(0) TCGA-GN-A26C-01 7 44281908 44281908 G A CAMK2B Missense_Mutation p.P243L 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GN-A26C-01 7 44571777 44571777 C T NPC1L1 Missense_Mutation p.E817K 0.16 tolerated(1) benign(0.001) TCGA-GN-A26C-01 7 48316016 48316016 G A ABCA13 Silent p.R2251R 0.19 TCGA-GN-A26C-01 7 50672025 50672025 G A GRB10 Missense_Mutation p.P480L 0.27 tolerated(0.07) benign(0.005) TCGA-GN-A26C-01 7 5104229 5104229 C T RBAK Missense_Mutation p.S381F 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 55499040 55499040 C T LANCL2 3'UTR 0.27 TCGA-GN-A26C-01 7 55499041 55499041 C T LANCL2 3'UTR 0.25 TCGA-GN-A26C-01 7 56174186 56174186 G A CHCHD2 5'UTR 0.36 TCGA-GN-A26C-01 7 56174187 56174187 G A CHCHD2 5'UTR 0.36 TCGA-GN-A26C-01 7 57528830 57528830 C T ZNF716 Silent p.S221S 0.44 TCGA-GN-A26C-01 7 66103239 66103239 G A KCTD7 Splice_Site p.X105_splice 0.26 TCGA-GN-A26C-01 7 71175841 71175841 G A WBSCR17 Silent p.K532K 0.30 TCGA-GN-A26C-01 7 72658121 72658121 G A GTF2IRD2P1 RNA 0.15 TCGA-GN-A26C-01 7 72856562 72856562 G A BAZ1B Silent p.A1472A 0.31 TCGA-GN-A26C-01 7 72856563 72856563 G A BAZ1B Missense_Mutation p.A1472V 0.31 tolerated_low_confidence(0.14) benign(0) TCGA-GN-A26C-01 7 73803525 73803525 C T CLIP2 Missense_Mutation p.R886W 0.22 deleterious(0) possibly_damaging(0.656) TCGA-GN-A26C-01 7 7545698 7545698 C T COL28A1 Missense_Mutation p.G325R 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 7 75615739 75615739 G A POR Silent p.A661A 0.25 TCGA-GN-A26C-01 7 76903933 76903933 A T CCDC146 Missense_Mutation p.E468D 0.30 deleterious(0) possibly_damaging(0.839) TCGA-GN-A26C-01 7 77268027 77268027 C T PTPN12 Missense_Mutation p.P754S 0.26 tolerated_low_confidence(0.13) benign(0.08) TCGA-GN-A26C-01 7 81714125 81714125 C T CACNA2D1 Silent p.Q206Q 0.18 TCGA-GN-A26C-01 7 82545732 82545732 C T PCLO Missense_Mutation p.R3857K 0.39 unknown(0) TCGA-GN-A26C-01 7 82580373 82580373 C T PCLO Silent p.T3177T 0.32 TCGA-GN-A26C-01 7 82581953 82581953 T C PCLO Silent p.Q2772Q 0.19 TCGA-GN-A26C-01 7 82586143 82586143 C T PCLO Missense_Mutation p.E1376K 0.29 unknown(0) TCGA-GN-A26C-01 7 82784618 82784618 C T PCLO Missense_Mutation p.G447R 0.23 probably_damaging(0.979) TCGA-GN-A26C-01 7 84685101 84685101 G A SEMA3D Missense_Mutation p.R265C 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A26C-01 7 86479764 86479764 C T GRM3 Missense_Mutation p.H824Y 0.30 tolerated(1) benign(0.26) TCGA-GN-A26C-01 7 883214 883214 C T SUN1 Intron 0.17 TCGA-GN-A26C-01 7 88964370 88964370 G A ZNF804B Missense_Mutation p.G692R 0.40 tolerated(0.31) benign(0.057) TCGA-GN-A26C-01 7 91863814 91863814 G A KRIT1 Missense_Mutation p.S313L 0.22 tolerated(0.12) benign(0.313) TCGA-GN-A26C-01 7 92760610 92760610 C T SAMD9L Missense_Mutation p.G1559S 0.24 deleterious(0) probably_damaging(0.994) TCGA-GN-A26C-01 7 92761569 92761569 G A SAMD9L Missense_Mutation p.P1239L 0.19 tolerated(0.11) benign(0.02) TCGA-GN-A26C-01 7 92844816 92844816 G A HEPACAM2 Missense_Mutation p.H205Y 0.44 tolerated(1) benign(0.102) TCGA-GN-A26C-01 7 93065362 93065362 G A CALCR Silent p.L385L 0.18 TCGA-GN-A26C-01 7 94993217 94993217 C T PON3 Missense_Mutation p.G218E 0.17 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 7 98445712 98445712 G A TMEM130 Silent p.P425P 0.12 TCGA-GN-A26C-01 7 98460902 98460902 G A TMEM130 Silent p.L69L 0.19 TCGA-GN-A26C-01 7 98461023 98461023 C T TMEM130 Missense_Mutation p.G29D 0.08 tolerated(0.37) benign(0.031) TCGA-GN-A26C-01 7 99079874 99079874 C T ZNF789 Intron 0.35 TCGA-GN-A26C-01 7 99521176 99521176 C T GJC3 Missense_Mutation p.D278N 0.31 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-GN-A26C-01 7 99800132 99800132 C T STAG3 Silent p.L873L 0.31 TCGA-GN-A26C-01 7 99800133 99800133 C T STAG3 Silent p.L874L 0.32 TCGA-GN-A26C-01 8 10469043 10469043 G A RP1L1 Silent p.T855T 0.50 TCGA-GN-A26C-01 8 10470209 10470209 G A RP1L1 Missense_Mutation p.P467S 0.32 benign(0.132) TCGA-GN-A26C-01 8 105263289 105263289 C T RIMS2 Silent p.V1243V 0.16 TCGA-GN-A26C-01 8 105360854 105360854 G A DCSTAMP Missense_Mutation p.G25E 0.17 deleterious(0.01) possibly_damaging(0.873) TCGA-GN-A26C-01 8 10755455 10755455 G A XKR6 3'UTR 0.15 TCGA-GN-A26C-01 8 108315572 108315572 C T ANGPT1 Missense_Mutation p.E278K 0.19 tolerated(0.4) benign(0.005) TCGA-GN-A26C-01 8 108913395 108913395 C T RSPO2 Missense_Mutation p.E214K 0.33 tolerated(0.81) benign(0.002) TCGA-GN-A26C-01 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.15 tolerated(0.07) probably_damaging(0.935) TCGA-GN-A26C-01 8 110305711 110305711 G A NUDCD1 Missense_Mutation p.H168Y 0.10 deleterious(0) possibly_damaging(0.602) TCGA-GN-A26C-01 8 110509253 110509253 G A PKHD1L1 Missense_Mutation p.G3478E 0.18 deleterious(0.04) benign(0.251) TCGA-GN-A26C-01 8 110530641 110530641 A G PKHD1L1 Missense_Mutation p.R3979G 0.16 tolerated(0.4) benign(0.009) TCGA-GN-A26C-01 8 110980428 110980428 G A KCNV1 Silent p.I464I 0.22 TCGA-GN-A26C-01 8 113317070 113317070 C T CSMD3 Missense_Mutation p.E2716K 0.14 tolerated(0.09) probably_damaging(0.973) TCGA-GN-A26C-01 8 11615832 11615832 G A GATA4 Missense_Mutation p.G393R 0.14 deleterious(0.01) benign(0.004) TCGA-GN-A26C-01 8 118185013 118185013 G A SLC30A8 3'UTR 0.35 TCGA-GN-A26C-01 8 121174798 121174798 C T COL14A1 Silent p.G113G 0.15 TCGA-GN-A26C-01 8 121471542 121471542 C T MTBP Missense_Mutation p.L279F 0.18 tolerated(0.23) benign(0.001) TCGA-GN-A26C-01 8 125076727 125076727 C T FER1L6 Silent p.I1156I 0.15 TCGA-GN-A26C-01 8 125988866 125988866 C T ZNF572 Missense_Mutation p.A119V 0.21 tolerated(0.35) benign(0.002) TCGA-GN-A26C-01 8 131922042 131922042 C T ADCY8 Missense_Mutation p.G518S 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 8 131964149 131964149 G A ADCY8 Silent p.F402F 0.23 TCGA-GN-A26C-01 8 133153538 133153538 G A KCNQ3 Missense_Mutation p.P435S 0.19 tolerated(0.29) benign(0.015) TCGA-GN-A26C-01 8 13357009 13357009 A G DLC1 Missense_Mutation p.L191P 0.31 tolerated_low_confidence(0.2) benign(0.02) TCGA-GN-A26C-01 8 133881993 133881993 G A TG Missense_Mutation p.D66N 0.11 tolerated(0.77) benign(0.04) TCGA-GN-A26C-01 8 134042252 134042252 G A TG Missense_Mutation p.R2408Q 0.19 tolerated(0.53) benign(0.053) TCGA-GN-A26C-01 8 134146969 134146969 G A TG Silent p.T2746T 0.15 TCGA-GN-A26C-01 8 134146970 134146970 G A TG Missense_Mutation p.A2747T 0.17 tolerated(0.13) benign(0.011) TCGA-GN-A26C-01 8 142202474 142202474 C T DENND3 Missense_Mutation p.H1062Y 0.21 tolerated(1) benign(0) TCGA-GN-A26C-01 8 143832508 143832508 C T LYPD2 Missense_Mutation p.E47K 0.22 deleterious(0.01) possibly_damaging(0.621) TCGA-GN-A26C-01 8 143846063 143846063 G A LYNX1 Missense_Mutation p.S119F 0.12 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 8 143928033 143928033 G A GML Missense_Mutation p.G135E 0.24 deleterious(0.05) possibly_damaging(0.698) TCGA-GN-A26C-01 8 143957285 143957285 G A CYP11B1 Missense_Mutation p.P322S 0.20 tolerated(0.14) possibly_damaging(0.654) TCGA-GN-A26C-01 8 144102305 144102305 G A LY6E 5'UTR 0.18 TCGA-GN-A26C-01 8 144378433 144378433 C T ZNF696 Silent p.L196L 0.27 TCGA-GN-A26C-01 8 144463781 144463781 C T RHPN1 Silent p.L510L 0.22 TCGA-GN-A26C-01 8 144812355 144812355 C T FAM83H Missense_Mutation p.S133N 0.38 tolerated(0.73) benign(0.005) TCGA-GN-A26C-01 8 145535066 145535066 G C HSF1 Missense_Mutation p.K208N 0.19 deleterious(0.01) possibly_damaging(0.542) TCGA-GN-A26C-01 8 146157523 146157523 G A ZNF16 Missense_Mutation p.T217I 0.12 deleterious(0.02) benign(0.199) TCGA-GN-A26C-01 8 15517052 15517052 C T TUSC3 Missense_Mutation p.P155S 0.29 tolerated(0.17) probably_damaging(0.951) TCGA-GN-A26C-01 8 16001091 16001091 C T MSR1 Missense_Mutation p.E337K 0.24 deleterious(0) possibly_damaging(0.834) TCGA-GN-A26C-01 8 17930773 17930773 A T ASAH1 Intron 0.22 TCGA-GN-A26C-01 8 18257782 18257782 G A NAT2 Missense_Mutation p.G90E 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A26C-01 8 18729663 18729663 C T PSD3 Silent p.R237R 0.15 TCGA-GN-A26C-01 8 2044149 2044149 G A MYOM2 Missense_Mutation p.G730S 0.28 tolerated(0.06) probably_damaging(0.986) TCGA-GN-A26C-01 8 2044150 2044150 G A MYOM2 Missense_Mutation p.G730D 0.29 deleterious(0) probably_damaging(0.99) TCGA-GN-A26C-01 8 22146078 22146078 G A PIWIL2 Silent p.R295R 0.21 TCGA-GN-A26C-01 8 22938937 22938937 C T RP11-875O11.2 RNA 0.31 TCGA-GN-A26C-01 8 24333949 24333949 C T ADAM7 Missense_Mutation p.R213C 0.17 deleterious(0) probably_damaging(0.961) TCGA-GN-A26C-01 8 24349524 24349524 G A ADAM7 Missense_Mutation p.G489R 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 8 25715986 25715986 C T EBF2 Silent p.R459R 0.15 TCGA-GN-A26C-01 8 26237612 26237612 G A BNIP3L 5'Flank 0.34 TCGA-GN-A26C-01 8 2813131 2813131 C T CSMD1 Missense_Mutation p.G3325E 0.24 probably_damaging(1) TCGA-GN-A26C-01 8 2820047 2820047 G A CSMD1 Missense_Mutation p.S3190F 0.11 probably_damaging(0.999) TCGA-GN-A26C-01 8 28638404 28638404 G A INTS9 Silent p.F402F 0.11 TCGA-GN-A26C-01 8 28866603 28866603 C T HMBOX1 Missense_Mutation p.R201W 0.15 tolerated(0.13) probably_damaging(0.955) TCGA-GN-A26C-01 8 28950352 28950352 G A KIF13B Silent p.S1456S 0.15 TCGA-GN-A26C-01 8 2910145 2910145 G A CSMD1 Missense_Mutation p.S2500F 0.57 possibly_damaging(0.575) TCGA-GN-A26C-01 8 30537136 30537136 A T GSR Silent p.G490G 0.14 TCGA-GN-A26C-01 8 30601699 30601699 C T UBXN8 RNA 0.29 TCGA-GN-A26C-01 8 30700826 30700826 G A TEX15 Missense_Mutation p.S1903F 0.24 tolerated(0.09) possibly_damaging(0.822) TCGA-GN-A26C-01 8 30703594 30703594 G A TEX15 Silent p.I980I 0.31 TCGA-GN-A26C-01 8 3087620 3087620 G A CSMD1 Silent p.I1429I 0.29 TCGA-GN-A26C-01 8 30916728 30916728 C T WRN Silent p.S52S 0.10 TCGA-GN-A26C-01 8 30999245 30999245 C T WRN Missense_Mutation p.L1063F 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 8 35624420 35624420 G A UNC5D Missense_Mutation p.E772K 0.21 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 8 39587434 39587434 C T ADAM18 Missense_Mutation p.S732L 0.23 tolerated(0.17) benign(0.001) TCGA-GN-A26C-01 8 39873107 39873107 C T IDO2 Missense_Mutation p.H417Y 0.30 tolerated(0.36) benign(0.004) TCGA-GN-A26C-01 8 40532416 40532416 C T ZMAT4 Missense_Mutation p.M128I 0.26 tolerated(0.25) benign(0) TCGA-GN-A26C-01 8 41551532 41551532 C T ANK1 Missense_Mutation p.R1180Q 0.30 deleterious(0) benign(0.059) TCGA-GN-A26C-01 8 42259489 42259489 C T VDAC3 Silent p.F170F 0.22 TCGA-GN-A26C-01 8 42587261 42587261 G A CHRNB3 Missense_Mutation p.V271I 0.22 tolerated(0.2) probably_damaging(0.999) TCGA-GN-A26C-01 8 42829284 42829284 C T HOOK3 Missense_Mutation p.T423I 0.25 tolerated(0.09) possibly_damaging(0.857) TCGA-GN-A26C-01 8 43159870 43159870 G A RNU6-104P 3'Flank 0.22 TCGA-GN-A26C-01 8 43211928 43211928 G A POTEA RNA 0.17 TCGA-GN-A26C-01 8 48701521 48701521 G A PRKDC Silent p.A3615A 0.21 TCGA-GN-A26C-01 8 48812989 48812989 G A PRKDC Missense_Mutation p.A1103V 0.11 benign(0.03) TCGA-GN-A26C-01 8 49987823 49987823 C T C8orf22 3'UTR 0.14 TCGA-GN-A26C-01 8 52366189 52366189 G A PXDNL Missense_Mutation p.S380F 0.16 deleterious(0) probably_damaging(0.938) TCGA-GN-A26C-01 8 52384783 52384783 C T PXDNL Missense_Mutation p.G259E 0.14 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 8 55533787 55533787 G A RP1 Silent p.R87R 0.22 TCGA-GN-A26C-01 8 57354400 57354400 C T PENK Missense_Mutation p.D79N 0.24 tolerated(0.1) benign(0.081) TCGA-GN-A26C-01 8 66636582 66636582 G A PDE7A Missense_Mutation p.A357V 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 8 6782415 6782415 C T DEFA6 Silent p.R76R 0.26 TCGA-GN-A26C-01 8 6782416 6782416 C T DEFA6 Missense_Mutation p.R76K 0.27 tolerated(1) possibly_damaging(0.67) TCGA-GN-A26C-01 8 6794422 6794422 G A DEFA4 5'UTR 0.27 TCGA-GN-A26C-01 8 69621251 69621251 G A C8orf34 Missense_Mutation p.E422K 0.29 deleterious(0.03) possibly_damaging(0.641) TCGA-GN-A26C-01 8 70498635 70498635 C T SULF1 Silent p.I152I 0.25 TCGA-GN-A26C-01 8 76465427 76465427 G A HNF4G Missense_Mutation p.D204N 0.23 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 8 79510748 79510748 A C PKIA Silent p.A43A 0.21 TCGA-GN-A26C-01 8 79510749 79510749 G A PKIA Missense_Mutation p.G44S 0.24 deleterious(0.03) benign(0.132) TCGA-GN-A26C-01 8 8234649 8234649 G A SGK223 Missense_Mutation p.P424S 0.38 benign(0.006) TCGA-GN-A26C-01 8 89058940 89058940 C T MMP16 Silent p.G482G 0.13 TCGA-GN-A26C-01 8 92378808 92378808 G A SLC26A7 Missense_Mutation p.E497K 0.13 tolerated(0.76) benign(0.281) TCGA-GN-A26C-01 8 92378861 92378861 G A SLC26A7 Silent p.L514L 0.25 TCGA-GN-A26C-01 8 94792886 94792886 C T TMEM67 Silent p.Y260Y 0.15 TCGA-GN-A26C-01 8 94809567 94809567 G A TMEM67 Missense_Mutation p.G657S 0.14 tolerated(0.46) possibly_damaging(0.559) TCGA-GN-A26C-01 8 95158316 95158316 C T CDH17 Silent p.K669K 0.30 TCGA-GN-A26C-01 8 95262708 95262708 G A GEM Missense_Mutation p.L241F 0.09 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 8 95503874 95503874 G A KIAA1429 Missense_Mutation p.S1691L 0.22 tolerated(0.24) benign(0.229) TCGA-GN-A26C-01 8 99102183 99102183 G A C8orf47 Missense_Mutation p.R313Q 0.28 deleterious(0.02) benign(0.16) TCGA-GN-A26C-01 8 99120894 99120894 C A HRSP12 Missense_Mutation p.V51L 0.18 deleterious(0.02) benign(0.077) TCGA-GN-A26C-01 8 99146758 99146758 T C POP1 Silent p.L294L 0.22 TCGA-GN-A26C-01 9 100380096 100380096 G A TSTD2 Silent p.P182P 0.39 TCGA-GN-A26C-01 9 100380097 100380097 G A TSTD2 Missense_Mutation p.P182L 0.37 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 9 101749577 101749577 G A COL15A1 Missense_Mutation p.G217D 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 9 102722256 102722256 C T STX17 Missense_Mutation p.A158V 0.31 tolerated(0.34) benign(0) TCGA-GN-A26C-01 9 102722257 102722257 C T STX17 Silent p.A158A 0.32 TCGA-GN-A26C-01 9 103348428 103348428 C T MURC Missense_Mutation p.P264S 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 9 104171635 104171635 C T ZNF189 Nonsense_Mutation p.R529* 0.44 TCGA-GN-A26C-01 9 1053734 1053734 C T DMRT2 Missense_Mutation p.L180F 0.24 deleterious(0.04) benign(0.008) TCGA-GN-A26C-01 9 1057218 1057218 C T DMRT2 Missense_Mutation p.S544F 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A26C-01 9 107289317 107289317 G A OR13C4 Silent p.P58P 0.37 TCGA-GN-A26C-01 9 107367354 107367354 C T OR13C2 Missense_Mutation p.M185I 0.13 deleterious(0.01) benign(0.11) TCGA-GN-A26C-01 9 111618082 111618082 G A ACTL7B Silent p.P43P 0.42 TCGA-GN-A26C-01 9 112918706 112918706 C T PALM2-AKAP2 Silent p.L1035L 0.33 TCGA-GN-A26C-01 9 112963216 112963216 G A C9orf152 3'UTR 0.39 TCGA-GN-A26C-01 9 113173652 113173652 C A SVEP1 Missense_Mutation p.M2113I 0.17 benign(0.089) TCGA-GN-A26C-01 9 113275290 113275290 G A SVEP1 Missense_Mutation p.H407Y 0.28 benign(0.428) TCGA-GN-A26C-01 9 118997420 118997420 C T PAPPA Missense_Mutation p.H746Y 0.33 deleterious(0) benign(0.152) TCGA-GN-A26C-01 9 119187842 119187842 G A ASTN2 3'UTR 0.36 TCGA-GN-A26C-01 9 119770441 119770441 G A ASTN2 Silent p.S456S 0.47 TCGA-GN-A26C-01 9 120476944 120476944 C T TLR4 3'UTR 0.36 TCGA-GN-A26C-01 9 121971167 121971167 G A BRINP1 Silent p.I325I 0.32 TCGA-GN-A26C-01 9 123591436 123591436 G A PSMD5 Silent p.T204T 0.39 TCGA-GN-A26C-01 9 125273126 125273126 G A OR1J2 Missense_Mutation p.G16S 0.35 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-GN-A26C-01 9 125281530 125281530 C T OR1J4 Silent p.I37I 0.17 TCGA-GN-A26C-01 9 125315566 125315566 G A OR1N2 Missense_Mutation p.E40K 0.41 tolerated(0.05) benign(0.039) TCGA-GN-A26C-01 9 125330442 125330442 G A OR1L8 Silent p.L105L 0.23 TCGA-GN-A26C-01 9 125391017 125391017 G A OR1B1 Silent p.F266F 0.25 TCGA-GN-A26C-01 9 126132638 126132638 G A CRB2 Missense_Mutation p.G436S 0.42 tolerated(1) possibly_damaging(0.855) TCGA-GN-A26C-01 9 126132639 126132639 G A CRB2 Missense_Mutation p.G436D 0.44 tolerated(0.52) probably_damaging(0.931) TCGA-GN-A26C-01 9 130489664 130489664 C T TTC16 Missense_Mutation p.P562S 0.44 tolerated(0.26) benign(0.014) TCGA-GN-A26C-01 9 130536314 130536314 C T SH2D3C Missense_Mutation p.G157E 0.33 tolerated(1) benign(0.014) TCGA-GN-A26C-01 9 131762069 131762069 G A NUP188 Silent p.R1276R 0.34 TCGA-GN-A26C-01 9 132591577 132591577 G A C9orf78 Missense_Mutation p.H229Y 0.16 tolerated(1) possibly_damaging(0.451) TCGA-GN-A26C-01 9 132866738 132866738 G A GPR107 Missense_Mutation p.E391K 0.36 deleterious(0.02) possibly_damaging(0.46) TCGA-GN-A26C-01 9 133370318 133370318 G A ASS1 Silent p.V345V 0.35 TCGA-GN-A26C-01 9 137809772 137809772 C T FCN1 5'UTR 0.30 TCGA-GN-A26C-01 9 138516033 138516033 C T GLT6D1 Silent p.L247L 0.22 TCGA-GN-A26C-01 9 138649043 138649043 G A KCNT1 Silent p.L214L 0.43 TCGA-GN-A26C-01 9 139276502 139276502 G A SNAPC4 Silent p.P697P 0.47 TCGA-GN-A26C-01 9 139371455 139371455 G A SEC16A Missense_Mutation p.P205S 0.40 tolerated(0.1) probably_damaging(0.998) TCGA-GN-A26C-01 9 14842369 14842369 G A FREM1 Silent p.I561I 0.40 TCGA-GN-A26C-01 9 21216880 21216880 G A IFNA16 Missense_Mutation p.A142V 0.35 deleterious(0.03) possibly_damaging(0.473) TCGA-GN-A26C-01 9 23704966 23704966 G A ELAVL2 Missense_Mutation p.S146L 0.15 deleterious(0.02) possibly_damaging(0.571) TCGA-GN-A26C-01 9 27202876 27202876 G A TEK Silent p.V656V 0.39 TCGA-GN-A26C-01 9 27455544 27455544 G A MOB3B Missense_Mutation p.S2F 0.19 deleterious(0.01) possibly_damaging(0.775) TCGA-GN-A26C-01 9 34501173 34501173 G A DNAI1 Missense_Mutation p.G353S 0.39 deleterious(0) possibly_damaging(0.899) TCGA-GN-A26C-01 9 35813492 35813492 G A HINT2 Missense_Mutation p.P93S 0.42 deleterious(0.01) probably_damaging(0.97) TCGA-GN-A26C-01 9 3828220 3828220 G A GLIS3 3'UTR 0.21 TCGA-GN-A26C-01 9 3856122 3856122 G A GLIS3 Missense_Mutation p.S787L 0.30 tolerated(0.13) probably_damaging(0.993) TCGA-GN-A26C-01 9 4662875 4662875 T C PPAPDC2 Missense_Mutation p.M167T 0.23 tolerated(0.07) benign(0.004) TCGA-GN-A26C-01 9 73477827 73477827 G A TRPM3 Silent p.A153A 0.37 TCGA-GN-A26C-01 9 73477828 73477828 G A TRPM3 Missense_Mutation p.A153V 0.38 deleterious(0) benign(0.439) TCGA-GN-A26C-01 9 79441559 79441559 G A PRUNE2 Missense_Mutation p.P200S 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 9 79890989 79890989 C T VPS13A Silent p.I892I 0.36 TCGA-GN-A26C-01 9 86004545 86004545 G A FRMD3 Missense_Mutation p.R76C 0.40 deleterious(0) possibly_damaging(0.88) TCGA-GN-A26C-01 9 86300962 86300962 G A UBQLN1 Missense_Mutation p.H97Y 0.35 deleterious(0) possibly_damaging(0.537) TCGA-GN-A26C-01 9 99107656 99107656 G A SLC35D2 Silent p.G172G 0.33 TCGA-GN-A26C-01 X 101581478 101581478 C T NXF2 3'UTR 0.18 TCGA-GN-A26C-01 X 102974059 102974059 G A GLRA4 Missense_Mutation p.R287C 0.40 deleterious(0) probably_damaging(0.982) TCGA-GN-A26C-01 X 105179275 105179275 G A NRK Missense_Mutation p.E1206K 0.28 tolerated(0.92) probably_damaging(0.991) TCGA-GN-A26C-01 X 105190359 105190359 C T NRK Missense_Mutation p.S1420F 0.28 deleterious(0) possibly_damaging(0.679) TCGA-GN-A26C-01 X 107084487 107084487 C T MID2 Missense_Mutation p.H198Y 0.42 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 X 108684702 108684702 G A GUCY2F Missense_Mutation p.R527C 0.39 tolerated(0.19) benign(0.001) TCGA-GN-A26C-01 X 109694148 109694148 C T RGAG1 Silent p.S101S 0.45 TCGA-GN-A26C-01 X 110489950 110489950 C T CAPN6 Missense_Mutation p.G594E 0.42 deleterious(0) probably_damaging(0.993) TCGA-GN-A26C-01 X 110489951 110489951 C T CAPN6 Missense_Mutation p.G594R 0.42 deleterious(0) probably_damaging(0.995) TCGA-GN-A26C-01 X 111090344 111090344 G A TRPC5 Silent p.S566S 0.29 TCGA-GN-A26C-01 X 111698219 111698219 C G ZCCHC16 Missense_Mutation p.S88C 0.33 tolerated(0.05) benign(0.017) TCGA-GN-A26C-01 X 113965940 113965940 C T HTR2C Silent p.F91F 0.27 TCGA-GN-A26C-01 X 115303666 115303666 G A AGTR2 Missense_Mutation p.D45N 0.39 tolerated(0.57) benign(0.001) TCGA-GN-A26C-01 X 117033149 117033149 G A KLHL13 Missense_Mutation p.L567F 0.33 tolerated(0.69) benign(0.099) TCGA-GN-A26C-01 X 117053535 117053535 G A KLHL13 Silent p.F176F 0.39 TCGA-GN-A26C-01 X 118151570 118151570 C T LONRF3 Missense_Mutation p.P733S 0.28 deleterious(0.01) probably_damaging(1) TCGA-GN-A26C-01 X 123654524 123654524 C T TENM1 Silent p.T1048T 0.22 TCGA-GN-A26C-01 X 12838834 12838834 C T PRPS2 Missense_Mutation p.S262F 0.32 deleterious(0.01) benign(0.007) TCGA-GN-A26C-01 X 130215780 130215780 G A ARHGAP36 Silent p.T47T 0.31 TCGA-GN-A26C-01 X 131228089 131228089 C T FRMD7 Missense_Mutation p.M121I 0.39 deleterious(0.03) benign(0.009) TCGA-GN-A26C-01 X 13337048 13337048 C T ATXN3L Missense_Mutation p.A336T 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.881) TCGA-GN-A26C-01 X 137717808 137717808 G A FGF13 Silent p.F147F 0.55 TCGA-GN-A26C-01 X 137717816 137717816 C T FGF13 Missense_Mutation p.E145K 0.55 tolerated(0.15) possibly_damaging(0.522) TCGA-GN-A26C-01 X 14038617 14038617 G A GEMIN8 Missense_Mutation p.H18Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-GN-A26C-01 X 1407442 1407442 C T CSF2RA Missense_Mutation p.R84C 0.16 deleterious(0.04) benign(0.002) TCGA-GN-A26C-01 X 140985306 140985306 G A MAGEC3 Intron 0.23 TCGA-GN-A26C-01 X 140993277 140993277 G A MAGEC1 Silent p.E29E 0.41 TCGA-GN-A26C-01 X 142718375 142718375 C T SLITRK4 Missense_Mutation p.D184N 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A26C-01 X 150348569 150348569 G A GPR50 Missense_Mutation p.D172N 0.42 deleterious(0.02) possibly_damaging(0.628) TCGA-GN-A26C-01 X 150349793 150349793 G A GPR50 Missense_Mutation p.E580K 0.39 deleterious_low_confidence(0.04) benign(0.034) TCGA-GN-A26C-01 X 150841117 150841117 G A PASD1 Missense_Mutation p.E634K 0.32 tolerated(0.16) benign(0.006) TCGA-GN-A26C-01 X 151303995 151303995 G A MAGEA10 Missense_Mutation p.A33V 0.46 tolerated(0.14) benign(0.021) TCGA-GN-A26C-01 X 153069158 153069158 G A PDZD4 Missense_Mutation p.R654W 0.36 deleterious(0) probably_damaging(0.945) TCGA-GN-A26C-01 X 153219121 153219121 G A HCFC1 Silent p.S1478S 0.49 TCGA-GN-A26C-01 X 153222148 153222148 G A HCFC1 Missense_Mutation p.R855C 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GN-A26C-01 X 153283471 153283471 G A IRAK1 Missense_Mutation p.R299C 0.39 tolerated(0.12) benign(0.024) TCGA-GN-A26C-01 X 153543534 153543534 G A TKTL1 Silent p.R292R 0.41 TCGA-GN-A26C-01 X 154133271 154133271 G A F8 Missense_Mutation p.P1801S 0.35 deleterious(0) possibly_damaging(0.696) TCGA-GN-A26C-01 X 154159549 154159549 G A F8 Missense_Mutation p.P839L 0.26 tolerated(0.45) benign(0.001) TCGA-GN-A26C-01 X 155169448 155169448 C T VAMP7 Missense_Mutation p.R173C 0.12 deleterious(0.04) possibly_damaging(0.835) TCGA-GN-A26C-01 X 15596283 15596283 G A ACE2 Missense_Mutation p.S409L 0.32 deleterious(0) probably_damaging(0.996) TCGA-GN-A26C-01 X 1584969 1584969 G A P2RY8 Silent p.T161T 0.14 TCGA-GN-A26C-01 X 1585120 1585120 A G P2RY8 Missense_Mutation p.I111T 0.20 deleterious(0) probably_damaging(0.99) TCGA-GN-A26C-01 X 18238860 18238860 C G BEND2 Missense_Mutation p.R4T 0.26 tolerated_low_confidence(0.3) benign(0.001) TCGA-GN-A26C-01 X 23398107 23398107 C T PTCHD1 Missense_Mutation p.P251S 0.42 tolerated(1) benign(0.433) TCGA-GN-A26C-01 X 23412144 23412144 C T PTCHD1 Missense_Mutation p.H837Y 0.31 deleterious(0) probably_damaging(0.992) TCGA-GN-A26C-01 X 24197304 24197304 T C ZFX Silent p.A21A 0.32 TCGA-GN-A26C-01 X 24665181 24665181 G A PCYT1B Silent p.I14I 0.26 TCGA-GN-A26C-01 X 26212908 26212908 G A MAGEB6 Silent p.G315G 0.35 TCGA-GN-A26C-01 X 26213017 26213017 C T MAGEB6 Missense_Mutation p.P352S 0.39 deleterious(0) probably_damaging(0.998) TCGA-GN-A26C-01 X 30871041 30871041 G A TAB3 Nonsense_Mutation p.Q522* 0.27 TCGA-GN-A26C-01 X 3241612 3241612 C T MXRA5 Missense_Mutation p.G705E 0.33 tolerated(0.21) benign(0.017) TCGA-GN-A26C-01 X 34149415 34149415 C T FAM47A Silent p.P327P 0.28 TCGA-GN-A26C-01 X 34149583 34149583 C T FAM47A Silent p.R271R 0.26 TCGA-GN-A26C-01 X 35944269 35944269 G A CXorf22 Missense_Mutation p.E129K 0.40 deleterious(0.03) possibly_damaging(0.49) TCGA-GN-A26C-01 X 37028638 37028638 C T FAM47C Missense_Mutation p.P719S 0.24 deleterious(0.01) benign(0.001) TCGA-GN-A26C-01 X 37028639 37028639 C T FAM47C Missense_Mutation p.P719L 0.23 tolerated(0.06) benign(0.001) TCGA-GN-A26C-01 X 44942739 44942739 C T KDM6A Missense_Mutation p.P1107S 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 X 47106753 47106753 C T USP11 Missense_Mutation p.P867L 0.38 deleterious(0.03) benign(0.023) TCGA-GN-A26C-01 X 49029740 49029740 C T PLP2 Silent p.F85F 0.39 TCGA-GN-A26C-01 X 52825500 52825500 C T SPANXN5 3'UTR 0.37 TCGA-GN-A26C-01 X 55172525 55172525 G A FAM104B Missense_Mutation p.P115S 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-GN-A26C-01 X 65819657 65819657 G A EDA2R Missense_Mutation p.S209F 0.38 tolerated(0.12) probably_damaging(1) TCGA-GN-A26C-01 X 69774649 69774649 C T TEX11 Silent p.G729G 0.41 TCGA-GN-A26C-01 X 71846820 71846820 C T PHKA1 Splice_Site p.X598_splice 0.35 TCGA-GN-A26C-01 X 71925095 71925095 C T PHKA1 Splice_Site p.X80_splice 0.34 TCGA-GN-A26C-01 X 73041824 73041824 G A XIST RNA 0.32 TCGA-GN-A26C-01 X 73063611 73063611 C T XIST RNA 0.18 TCGA-GN-A26C-01 X 73063632 73063632 G A XIST RNA 0.23 TCGA-GN-A26C-01 X 78217080 78217080 C T P2RY10 3'UTR 0.56 TCGA-GN-A26C-01 X 84563138 84563138 C T POF1B Missense_Mutation p.D348N 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A26C-01 X 9659683 9659683 C A TBL1X Silent p.V227V 0.38 TCGA-GN-A26C-01 X 9900857 9900857 C T SHROOM2 Silent p.P1178P 0.24 TCGA-GN-A26C-01 X 99919927 99919927 G A SRPX2 Missense_Mutation p.G171E 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A26C-01 Y 16942109 16942109 G A NLGN4Y Silent p.R437R 0.44 TCGA-GN-A26C-01 Y 16952792 16952792 G A NLGN4Y Missense_Mutation p.D701N 0.44 deleterious(0) probably_damaging(0.98) TCGA-GN-A26C-01 Y 21877756 21877756 G A KDM5D Silent p.S722S 0.41 TCGA-GN-A26D-06 10 78872169 78872169 T C KCNMA1 Missense_Mutation p.I306V 0.68 tolerated(0.2) possibly_damaging(0.561) TCGA-GN-A26D-06 10 99683047 99683047 G A CRTAC1 Missense_Mutation p.R178C 0.11 deleterious(0) probably_damaging(0.999) TCGA-GN-A26D-06 11 113934445 113934445 G T ZBTB16 Silent p.G141G 0.05 TCGA-GN-A26D-06 11 114182786 114182786 G T NNMT Nonsense_Mutation p.E128* 0.65 TCGA-GN-A26D-06 11 118376241 118376241 A G KMT2A Missense_Mutation p.T3212A 0.74 benign(0.017) TCGA-GN-A26D-06 11 76371968 76371968 T C LRRC32 Silent p.L223L 0.06 TCGA-GN-A26D-06 12 110977692 110977692 C T PPTC7 Missense_Mutation p.A221T 0.13 deleterious(0) probably_damaging(0.996) TCGA-GN-A26D-06 12 123187358 123187358 A T HCAR2 Missense_Mutation p.L158Q 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-GN-A26D-06 12 26217544 26217544 G A RASSF8 Missense_Mutation p.V73M 0.35 deleterious(0) probably_damaging(0.998) TCGA-GN-A26D-06 12 57626583 57626583 G A SHMT2 Missense_Mutation p.D272N 0.04 deleterious(0) probably_damaging(0.989) TCGA-GN-A26D-06 12 59268354 59268354 C T LRIG3 Silent p.G899G 0.36 TCGA-GN-A26D-06 12 94637742 94637742 A T PLXNC1 Nonsense_Mutation p.R777* 0.83 TCGA-GN-A26D-06 13 20279862 20279862 G A PSPC1 Silent p.A442A 0.22 TCGA-GN-A26D-06 14 73985814 73985814 C A HEATR4 Nonsense_Mutation p.E375* 0.30 TCGA-GN-A26D-06 15 38643678 38643679 - A SPRED1 Frame_Shift_Ins p.E384Rfs*6 0.42 TCGA-GN-A26D-06 16 11772980 11772980 C G TXNDC11 3'UTR 0.25 TCGA-GN-A26D-06 16 31284753 31284753 G A ITGAM Missense_Mutation p.D258N 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A26D-06 17 11572800 11572800 G A DNAH9 Silent p.S1014S 0.11 TCGA-GN-A26D-06 17 15974803 15974803 C G NCOR1 Missense_Mutation p.D1358H 0.18 probably_damaging(0.999) TCGA-GN-A26D-06 17 16052809 16052809 G A NCOR1 Missense_Mutation p.L289F 0.19 probably_damaging(0.993) TCGA-GN-A26D-06 17 39913672 39913672 C T JUP Missense_Mutation p.E681K 0.26 tolerated(0.27) benign(0.031) TCGA-GN-A26D-06 17 42161941 42161941 C G HDAC5 Missense_Mutation p.D764H 0.24 deleterious(0) benign(0.001) TCGA-GN-A26D-06 17 43215194 43215194 G C ACBD4 Missense_Mutation p.S203T 0.14 tolerated_low_confidence(0.24) benign(0.08) TCGA-GN-A26D-06 17 79650877 79650877 C T ARL16 5'UTR 0.18 TCGA-GN-A26D-06 19 10939755 10939755 C T DNM2 Missense_Mutation p.S701F 0.17 deleterious(0) probably_damaging(0.951) TCGA-GN-A26D-06 19 3821378 3821378 C T ZFR2 Missense_Mutation p.E531K 0.41 tolerated(0.15) benign(0.004) TCGA-GN-A26D-06 19 49933928 49933928 C T SLC17A7 Missense_Mutation p.V511I 0.77 tolerated(1) benign(0.001) TCGA-GN-A26D-06 19 617268 617268 G A POLRMT 3'UTR 0.49 TCGA-GN-A26D-06 19 6477464 6477464 G C DENND1C Silent p.T124T 0.23 TCGA-GN-A26D-06 19 6586403 6586403 G A CD70 Silent p.D70D 0.35 TCGA-GN-A26D-06 19 8662006 8662006 T C ADAMTS10 Missense_Mutation p.E302G 0.26 deleterious(0.01) possibly_damaging(0.745) TCGA-GN-A26D-06 1 152777547 152777547 C A LCE1C 3'UTR 0.14 TCGA-GN-A26D-06 1 186276689 186276689 C G PRG4 Missense_Mutation p.P613R 0.67 unknown(0) TCGA-GN-A26D-06 1 186413523 186413523 C A PDC Missense_Mutation p.R110I 0.74 deleterious(0.01) possibly_damaging(0.779) TCGA-GN-A26D-06 1 215847711 215847711 G A USH2A Silent p.S4514S 0.12 TCGA-GN-A26D-06 1 50659525 50659525 T C ELAVL4 Missense_Mutation p.L165P 0.27 deleterious(0) possibly_damaging(0.866) TCGA-GN-A26D-06 20 36634691 36634691 G T TTI1 Missense_Mutation p.T804N 0.18 tolerated(0.58) benign(0.023) TCGA-GN-A26D-06 20 55033678 55033678 G T CASS4 Missense_Mutation p.D746Y 0.35 deleterious(0) possibly_damaging(0.903) TCGA-GN-A26D-06 21 34923346 34923346 T C SON Silent p.A603A 0.33 TCGA-GN-A26D-06 21 41450683 41450683 T A DSCAM Missense_Mutation p.M1548L 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A26D-06 22 30984115 30984115 T C PES1 Missense_Mutation p.K51E 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-GN-A26D-06 22 50961607 50961607 G A NCAPH2 Intron 0.21 TCGA-GN-A26D-06 2 179640610 179640610 G A TTN Missense_Mutation p.S1994L 0.47 TCGA-GN-A26D-06 2 31155012 31155012 G T GALNT14 Missense_Mutation p.P332H 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A26D-06 3 195515747 195515747 C T MUC4 Missense_Mutation p.A902T 0.34 unknown(0) TCGA-GN-A26D-06 4 39105027 39105027 G T KLHL5 Missense_Mutation p.G520V 0.09 deleterious(0) probably_damaging(1) TCGA-GN-A26D-06 5 93076382 93076382 C A POU5F2 Silent p.L296L 0.09 TCGA-GN-A26D-06 6 161513084 161513084 C T MAP3K4 Nonsense_Mutation p.Q1060* 0.59 TCGA-GN-A26D-06 7 116339558 116339558 C G MET Silent p.T140T 0.34 TCGA-GN-A26D-06 7 141672894 141672894 T C TAS2R38 Missense_Mutation p.Y199C 0.44 tolerated(0.14) possibly_damaging(0.738) TCGA-GN-A26D-06 7 98256538 98256538 C T NPTX2 Missense_Mutation p.T317M 0.14 deleterious(0) possibly_damaging(0.634) TCGA-GN-A26D-06 8 103572783 103572783 C T ODF1 Nonsense_Mutation p.R142* 0.41 TCGA-GN-A26D-06 8 26365099 26365099 T C PNMA2 3'UTR 0.25 TCGA-GN-A26D-06 9 34977182 34977182 C A KIAA1045 Silent p.R318R 0.31 TCGA-GN-A26D-06 9 79898509 79898509 C T VPS13A Silent p.N1094N 0.45 TCGA-GN-A26D-06 X 102968473 102968473 C T GLRA4 Missense_Mutation p.R353Q 0.51 deleterious(0.04) possibly_damaging(0.566) TCGA-GN-A26D-06 X 20134870 20134870 T G MAP7D2 Missense_Mutation p.Q43P 0.26 tolerated(0.29) benign(0.01) TCGA-GN-A26D-06 X 2640667 2640667 G T CD99 Splice_Site p.X88_splice 0.18 TCGA-GN-A26D-06 X 73811749 73811749 G C RLIM Silent p.S467S 0.13 TCGA-GN-A4U3-06 10 101117322 101117322 C T CNNM1 Missense_Mutation p.P543S 0.31 deleterious(0.02) probably_damaging(1) TCGA-GN-A4U3-06 10 103920812 103920812 A C NOLC1 Missense_Mutation p.E568A 0.43 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A4U3-06 10 104173721 104173721 G A PSD Missense_Mutation p.P453L 0.42 tolerated(0.43) benign(0.001) TCGA-GN-A4U3-06 10 114158691 114158691 C T ACSL5 Silent p.N119N 0.45 TCGA-GN-A4U3-06 10 114903697 114903697 C T TCF7L2 Missense_Mutation p.P234L 0.40 tolerated(0.14) probably_damaging(1) TCGA-GN-A4U3-06 10 124380773 124380773 G C DMBT1 Missense_Mutation p.G1700R 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 10 135340890 135340890 C T CYP2E1 5'UTR 0.43 TCGA-GN-A4U3-06 10 17702529 17702529 T C STAM Missense_Mutation p.V36A 0.57 deleterious(0) possibly_damaging(0.814) TCGA-GN-A4U3-06 10 26789987 26789987 G A APBB1IP Missense_Mutation p.D134N 0.30 tolerated(0.15) benign(0.027) TCGA-GN-A4U3-06 10 28409261 28409261 T C MPP7 Missense_Mutation p.K250R 0.43 tolerated(0.09) benign(0.086) TCGA-GN-A4U3-06 10 28409262 28409262 T C MPP7 Missense_Mutation p.K250E 0.44 deleterious(0) possibly_damaging(0.559) TCGA-GN-A4U3-06 10 29599985 29599985 C T LYZL1 Silent p.S194S 0.44 TCGA-GN-A4U3-06 10 37455612 37455612 G A ANKRD30A Missense_Mutation p.G659E 0.43 tolerated(0.19) benign(0.003) TCGA-GN-A4U3-06 10 48389124 48389124 G A RBP3 Missense_Mutation p.P585L 0.34 tolerated(0.25) possibly_damaging(0.908) TCGA-GN-A4U3-06 10 50530572 50530572 G A C10orf71 5'UTR 0.38 TCGA-GN-A4U3-06 10 52610544 52610544 C T A1CF Missense_Mutation p.E2K 0.48 deleterious_low_confidence(0) unknown(0) TCGA-GN-A4U3-06 10 61832829 61832829 C T ANK3 Missense_Mutation p.D2604N 0.37 benign(0.324) TCGA-GN-A4U3-06 10 6266120 6266120 G T PFKFB3 Missense_Mutation p.V429L 0.38 probably_damaging(0.944) TCGA-GN-A4U3-06 10 70048381 70048381 G A PBLD Silent p.L184L 0.45 TCGA-GN-A4U3-06 10 70105490 70105490 G A RUFY2 3'UTR 0.28 TCGA-GN-A4U3-06 10 70729975 70729975 C T DDX21 Missense_Mutation p.H419Y 0.38 tolerated(0.13) possibly_damaging(0.76) TCGA-GN-A4U3-06 10 81706400 81706400 G A SFTPD Missense_Mutation p.L6F 0.33 tolerated(0.35) unknown(0) TCGA-GN-A4U3-06 10 89504779 89504779 C T PAPSS2 Silent p.S504S 0.49 TCGA-GN-A4U3-06 11 111156716 111156716 C T C11orf53 Silent p.S216S 0.94 TCGA-GN-A4U3-06 11 1213632 1213632 C T MUC5AC RNA 0.54 TCGA-GN-A4U3-06 11 134151946 134151946 C T GLB1L3 Silent p.I153I 0.75 TCGA-GN-A4U3-06 11 134214955 134214955 C T GLB1L2 Silent p.I127I 0.24 TCGA-GN-A4U3-06 11 17415304 17415304 T A ABCC8 Missense_Mutation p.E1516D 0.46 tolerated(0.85) benign(0.001) TCGA-GN-A4U3-06 11 17548304 17548304 G A USH1C Missense_Mutation p.S192F 0.20 deleterious(0) possibly_damaging(0.789) TCGA-GN-A4U3-06 11 372917 372917 G A B4GALNT4 Silent p.R138R 0.18 TCGA-GN-A4U3-06 11 45882540 45882540 G A CRY2 Silent p.E224E 0.52 TCGA-GN-A4U3-06 11 46396386 46396386 C T DGKZ Missense_Mutation p.P720L 0.43 deleterious(0) probably_damaging(0.991) TCGA-GN-A4U3-06 11 46760858 46760858 G A F2 Nonsense_Mutation p.W590* 0.46 TCGA-GN-A4U3-06 11 46760925 46760925 G A F2 Nonsense_Mutation p.W612* 0.40 TCGA-GN-A4U3-06 11 46832646 46832646 G A CKAP5 Nonsense_Mutation p.R181* 0.52 TCGA-GN-A4U3-06 11 49598113 49598113 C T RP11-707M1.1 RNA 0.43 TCGA-GN-A4U3-06 11 5142411 5142411 G A OR52A4 RNA 0.41 TCGA-GN-A4U3-06 11 56000423 56000423 C T OR5T2 Missense_Mutation p.G80E 0.14 deleterious(0) benign(0.417) TCGA-GN-A4U3-06 11 5653515 5653515 G A TRIM6-TRIM34 Missense_Mutation p.R339K 0.18 tolerated(0.56) benign(0.001) TCGA-GN-A4U3-06 11 5730874 5730874 C T TRIM22 Missense_Mutation p.S498F 0.52 deleterious(0) probably_damaging(0.98) TCGA-GN-A4U3-06 11 5730875 5730875 C T TRIM22 Silent p.S498S 0.52 TCGA-GN-A4U3-06 11 57564318 57564318 G A CTNND1 Silent p.V270V 0.20 TCGA-GN-A4U3-06 11 57564319 57564319 G A CTNND1 Missense_Mutation p.D271N 0.20 tolerated(0.09) possibly_damaging(0.722) TCGA-GN-A4U3-06 11 57982376 57982376 G A OR1S1 Missense_Mutation p.G54R 0.24 deleterious(0) probably_damaging(0.978) TCGA-GN-A4U3-06 11 61533511 61533511 C T MYRF Silent p.V72V 0.21 TCGA-GN-A4U3-06 11 63175679 63175679 C T SLC22A9 Missense_Mutation p.P462S 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 11 63672277 63672277 C T MARK2 Missense_Mutation p.P566S 0.43 tolerated(0.15) benign(0.408) TCGA-GN-A4U3-06 11 64884476 64884476 T C ZNHIT2 Missense_Mutation p.N217S 0.44 deleterious(0.01) possibly_damaging(0.484) TCGA-GN-A4U3-06 11 65771195 65771195 C T BANF1 Silent p.S74S 0.53 TCGA-GN-A4U3-06 11 72425248 72425248 G A ARAP1 Missense_Mutation p.P210S 0.72 tolerated(0.35) benign(0.004) TCGA-GN-A4U3-06 11 92086413 92086413 G A FAT3 Missense_Mutation p.E379K 0.33 benign(0.201) TCGA-GN-A4U3-06 11 95551057 95551057 C T CEP57 Missense_Mutation p.A204V 0.41 tolerated(0.15) benign(0.032) TCGA-GN-A4U3-06 12 103699957 103699957 C T C12orf42 Silent p.L142L 0.90 TCGA-GN-A4U3-06 12 11420614 11420614 C T PRB3 Missense_Mutation p.G190E 0.24 tolerated(0.08) unknown(0) TCGA-GN-A4U3-06 12 119916956 119916956 C T CCDC60 Silent p.F133F 0.37 TCGA-GN-A4U3-06 12 124311253 124311253 C T DNAH10 Missense_Mutation p.S1282F 0.75 probably_damaging(0.91) TCGA-GN-A4U3-06 12 18847965 18847965 C T PLCZ1 Missense_Mutation p.G447E 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 12 21008062 21008062 C T LST3 Missense_Mutation p.S62F 0.47 deleterious(0) probably_damaging(0.956) TCGA-GN-A4U3-06 12 313842 313842 G A SLC6A12 Silent p.F79F 0.51 TCGA-GN-A4U3-06 12 45568333 45568333 G A PLEKHA8P1 RNA 0.43 TCGA-GN-A4U3-06 12 49434220 49434220 G A KMT2D Nonsense_Mutation p.Q2445* 0.38 TCGA-GN-A4U3-06 12 51748156 51748156 C T GALNT6 3'UTR 0.80 TCGA-GN-A4U3-06 12 54793713 54793713 G A ITGA5 Silent p.L888L 0.40 TCGA-GN-A4U3-06 12 5744373 5744373 G A ANO2 Silent p.V587V 0.10 TCGA-GN-A4U3-06 12 5941718 5941718 G A ANO2 Silent p.L225L 0.51 TCGA-GN-A4U3-06 12 66152243 66152243 C T RPSAP52 RNA 0.71 TCGA-GN-A4U3-06 12 9724106 9724106 C A RP11-726G1.1 RNA 0.34 TCGA-GN-A4U3-06 13 109518567 109518567 G A MYO16 Missense_Mutation p.E446K 0.18 tolerated(0.07) probably_damaging(0.958) TCGA-GN-A4U3-06 13 113803738 113803738 C T F10 Silent p.F458F 0.21 TCGA-GN-A4U3-06 13 20077415 20077415 G A TPTE2 5'UTR 0.40 TCGA-GN-A4U3-06 13 25399847 25399847 G A RNF17 Missense_Mutation p.V728I 0.37 tolerated(0.07) benign(0.032) TCGA-GN-A4U3-06 13 37427573 37427573 G A SMAD9 Missense_Mutation p.R415W 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 13 61102882 61102882 G A TDRD3 Missense_Mutation p.G508E 0.19 deleterious(0.04) possibly_damaging(0.84) TCGA-GN-A4U3-06 13 75898447 75898447 G A TBC1D4 Silent p.F708F 0.43 TCGA-GN-A4U3-06 14 101514271 101514271 C T MIR889 RNA 0.66 TCGA-GN-A4U3-06 14 104124042 104124042 C G KLC1 Missense_Mutation p.L141V 0.58 deleterious(0.03) probably_damaging(0.928) TCGA-GN-A4U3-06 14 20444709 20444709 C T OR4K15 Silent p.F344F 0.49 TCGA-GN-A4U3-06 14 20979121 20979121 G A RNASE10 Missense_Mutation p.G164E 0.25 tolerated(0.17) possibly_damaging(0.728) TCGA-GN-A4U3-06 14 22102951 22102951 G A OR10G2 Silent p.F16F 0.23 TCGA-GN-A4U3-06 14 22409727 22409727 G A TRAV9-2 Missense_Mutation p.D73N 0.32 tolerated(1) benign(0.003) TCGA-GN-A4U3-06 14 23588106 23588106 C T CEBPE Silent p.E65E 0.50 TCGA-GN-A4U3-06 14 28734148 28734148 G A BNIP3P1 RNA 0.55 TCGA-GN-A4U3-06 14 37180593 37180593 C T SLC25A21 Missense_Mutation p.R178Q 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 14 75264654 75264654 C T YLPM1 Missense_Mutation p.S885F 0.62 possibly_damaging(0.885) TCGA-GN-A4U3-06 14 75269376 75269376 T A YLPM1 Nonsense_Mutation p.Y1506* 0.10 TCGA-GN-A4U3-06 14 75277050 75277050 C T YLPM1 Nonsense_Mutation p.R1719* 0.59 TCGA-GN-A4U3-06 14 77705804 77705804 G A TMEM63C Missense_Mutation p.V259I 0.34 deleterious(0) possibly_damaging(0.756) TCGA-GN-A4U3-06 14 93118223 93118223 C T RIN3 Missense_Mutation p.P277S 0.40 tolerated(0.32) unknown(0) TCGA-GN-A4U3-06 14 94964738 94964738 C T SERPINA12 5'UTR 0.25 TCGA-GN-A4U3-06 15 25440072 25440072 C T SNORD115-14 RNA 0.42 TCGA-GN-A4U3-06 15 35189779 35189779 G A AQR Missense_Mutation p.P791S 0.20 tolerated(0.05) benign(0.313) TCGA-GN-A4U3-06 15 41228858 41228858 G C DLL4 Missense_Mutation p.R558P 0.26 deleterious(0.03) possibly_damaging(0.749) TCGA-GN-A4U3-06 15 43067760 43067760 G A TTBK2 Missense_Mutation p.P524L 0.22 tolerated(0.06) benign(0.013) TCGA-GN-A4U3-06 15 50519259 50519259 G A SLC27A2 Silent p.K447K 0.22 TCGA-GN-A4U3-06 15 55912454 55912454 C T PRTG Missense_Mutation p.R1070K 0.49 tolerated(0.17) benign(0.006) TCGA-GN-A4U3-06 15 74610902 74610902 C T CCDC33 Intron 0.46 TCGA-GN-A4U3-06 15 74610903 74610903 C T CCDC33 Intron 0.45 TCGA-GN-A4U3-06 15 75557725 75557725 G A GOLGA6C Missense_Mutation p.R240K 0.65 deleterious(0.03) possibly_damaging(0.87) TCGA-GN-A4U3-06 15 78211478 78211478 C T RP11-114H24.7 Intron 0.20 TCGA-GN-A4U3-06 15 78894606 78894606 A T CHRNA3 Missense_Mutation p.N126K 0.48 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U3-06 15 83328416 83328416 G A AP3B2 Silent p.L1049L 0.25 TCGA-GN-A4U3-06 15 84373246 84373246 C T ADAMTSL3 Missense_Mutation p.R59C 0.47 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 15 90328647 90328647 G A ANPEP Missense_Mutation p.A946V 0.22 tolerated(0.1) benign(0.04) TCGA-GN-A4U3-06 15 93609308 93609308 G A RGMA Intron 0.28 TCGA-GN-A4U3-06 16 19485589 19485589 T A TMC5 Missense_Mutation p.L694H 0.54 deleterious(0) probably_damaging(0.971) TCGA-GN-A4U3-06 16 2111908 2111908 G A TSC2 Missense_Mutation p.D386N 0.62 tolerated(0.05) benign(0.057) TCGA-GN-A4U3-06 16 27460435 27460435 C T IL21R Missense_Mutation p.A483V 0.87 tolerated(0.42) benign(0.033) TCGA-GN-A4U3-06 16 30785434 30785434 G A RNF40 Silent p.%3D 0.26 TCGA-GN-A4U3-06 16 31088167 31088167 G A ZNF646 Silent p.L174L 0.30 TCGA-GN-A4U3-06 16 31308857 31308857 C T ITGAM Missense_Mutation p.S460F 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 16 31308858 31308858 C T ITGAM Silent p.S460S 0.33 TCGA-GN-A4U3-06 16 51173970 51173970 C T SALL1 Silent p.L721L 0.31 TCGA-GN-A4U3-06 16 57088981 57088981 G A NLRC5 Missense_Mutation p.E1212K 0.64 tolerated(0.29) benign(0.002) TCGA-GN-A4U3-06 16 68057122 68057122 G A DDX28 5'UTR 0.68 TCGA-GN-A4U3-06 16 70916612 70916612 C T HYDIN Missense_Mutation p.G3389E 0.20 probably_damaging(0.988) TCGA-GN-A4U3-06 16 70955014 70955014 C T HYDIN Missense_Mutation p.R2422K 0.20 benign(0.001) TCGA-GN-A4U3-06 16 70972629 70972629 C T HYDIN Missense_Mutation p.E2295K 0.32 probably_damaging(0.953) TCGA-GN-A4U3-06 16 71601977 71601977 C T TAT 3'UTR 0.19 TCGA-GN-A4U3-06 17 16467092 16467092 G A ZNF287 Silent p.D183D 0.95 TCGA-GN-A4U3-06 17 16855834 16855834 G A TNFRSF13B Missense_Mutation p.P42L 0.76 tolerated(0.22) possibly_damaging(0.74) TCGA-GN-A4U3-06 17 18630843 18630843 G A TRIM16L 5'UTR 0.11 TCGA-GN-A4U3-06 17 18630844 18630844 G A TRIM16L 5'UTR 0.12 TCGA-GN-A4U3-06 17 31322664 31322664 G A SPACA3 Missense_Mutation p.G91D 0.41 tolerated(0.08) benign(0.004) TCGA-GN-A4U3-06 17 3653762 3653762 G A ITGAE Silent p.S636S 0.74 TCGA-GN-A4U3-06 17 37101346 37101346 C T FBXO47 Silent p.R220R 0.43 TCGA-GN-A4U3-06 17 37948932 37948932 G A IKZF3 Missense_Mutation p.H140Y 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A4U3-06 17 39471945 39471945 T C KRTAP17-1 5'UTR 0.31 TCGA-GN-A4U3-06 17 40483543 40483543 C A STAT3 Silent p.L352L 0.17 TCGA-GN-A4U3-06 17 40870080 40870080 G A EZH1 Missense_Mutation p.H313Y 0.43 tolerated(0.1) benign(0.011) TCGA-GN-A4U3-06 17 41256241 41256241 G C BRCA1 Missense_Mutation p.N113K 0.44 deleterious(0) benign(0.028) TCGA-GN-A4U3-06 17 42429029 42429029 C T GRN Missense_Mutation p.P349S 0.17 tolerated(0.18) benign(0.158) TCGA-GN-A4U3-06 17 48069149 48069149 G A DLX3 Missense_Mutation p.P199L 0.37 tolerated(0.05) possibly_damaging(0.908) TCGA-GN-A4U3-06 17 48594769 48594769 G A MYCBPAP Missense_Mutation p.R150H 0.24 tolerated(1) benign(0.001) TCGA-GN-A4U3-06 17 51901204 51901204 C T KIF2B Silent p.F270F 0.24 TCGA-GN-A4U3-06 17 56232982 56232982 C T OR4D1 Silent p.S156S 0.45 TCGA-GN-A4U3-06 17 59556124 59556124 C T TBX4 Missense_Mutation p.S229F 0.44 deleterious(0) probably_damaging(0.942) TCGA-GN-A4U3-06 17 61894226 61894226 A G DDX42 Splice_Site p.X672_splice 0.06 TCGA-GN-A4U3-06 17 62893217 62893217 G A LRRC37A3 Silent p.P53P 0.24 TCGA-GN-A4U3-06 17 64880685 64880685 G A CACNG5 Silent p.E159E 0.26 TCGA-GN-A4U3-06 17 67101675 67101675 C T ABCA6 Missense_Mutation p.E890K 0.23 tolerated(0.68) benign(0.086) TCGA-GN-A4U3-06 17 72842271 72842271 C T GRIN2C Missense_Mutation p.A762T 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A4U3-06 17 7579717 7579717 G A TP53 Missense_Mutation p.P27S 0.91 tolerated(0.08) benign(0.219) TCGA-GN-A4U3-06 17 80275358 80275358 G A CD7 Missense_Mutation p.P5L 0.60 deleterious_low_confidence(0) unknown(0) TCGA-GN-A4U3-06 17 80430571 80430571 C G NARF Missense_Mutation p.P173A 0.38 deleterious(0) probably_damaging(0.984) TCGA-GN-A4U3-06 17 80430572 80430572 C T NARF Missense_Mutation p.P173L 0.38 deleterious(0.01) possibly_damaging(0.833) TCGA-GN-A4U3-06 17 81042645 81042645 C T METRNL Intron 0.40 TCGA-GN-A4U3-06 17 8224227 8224227 A T ARHGEF15 Missense_Mutation p.E814D 0.78 deleterious(0.03) benign(0.315) TCGA-GN-A4U3-06 18 21453109 21453109 G A LAMA3 Intron 0.27 TCGA-GN-A4U3-06 18 22029902 22029902 C T IMPACT Silent p.N293N 0.22 TCGA-GN-A4U3-06 18 30517983 30517983 C T CCDC178 Missense_Mutation p.D866N 0.23 tolerated(0.08) benign(0.177) TCGA-GN-A4U3-06 18 43450556 43450556 C T EPG5 Silent p.Q2067Q 0.14 TCGA-GN-A4U3-06 18 45555638 45555638 T C ZBTB7C Missense_Mutation p.N618S 0.36 tolerated_low_confidence(1) benign(0.026) TCGA-GN-A4U3-06 18 56008980 56008980 G A NEDD4L Missense_Mutation p.R443Q 0.51 tolerated(0.13) benign(0.382) TCGA-GN-A4U3-06 18 59166470 59166470 G A CDH20 Missense_Mutation p.G100R 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 18 61328397 61328397 C T SERPINB3 Silent p.Q18Q 0.38 TCGA-GN-A4U3-06 18 61582839 61582839 C T SERPINB10 Missense_Mutation p.S32F 0.45 deleterious(0) possibly_damaging(0.549) TCGA-GN-A4U3-06 18 6912103 6912103 C T ARHGAP28 Missense_Mutation p.R555C 0.46 deleterious(0) possibly_damaging(0.762) TCGA-GN-A4U3-06 19 15917942 15917942 C T OR10H1 Missense_Mutation p.M302I 0.20 tolerated(0.37) benign(0.001) TCGA-GN-A4U3-06 19 23938228 23938228 C A ZNF681 Missense_Mutation p.L43F 0.29 deleterious(0) probably_damaging(0.961) TCGA-GN-A4U3-06 19 31767603 31767603 G A TSHZ3 Silent p.S1032S 0.66 TCGA-GN-A4U3-06 19 3600643 3600643 C T TBXA2R 5'UTR 0.71 TCGA-GN-A4U3-06 19 36831765 36831765 G A ZFP14 Silent p.F321F 0.54 TCGA-GN-A4U3-06 19 44223726 44223726 C T IRGC Missense_Mutation p.S339L 0.27 deleterious(0.02) benign(0.416) TCGA-GN-A4U3-06 19 46331157 46331157 G A SYMPK Silent p.L669L 0.31 TCGA-GN-A4U3-06 19 48306127 48306127 G T TPRX1 Silent p.V47V 0.47 TCGA-GN-A4U3-06 19 49223978 49223978 G A RASIP1 3'UTR 0.38 TCGA-GN-A4U3-06 19 50102987 50102987 C T PRR12 Silent p.S1379S 0.37 TCGA-GN-A4U3-06 19 51410324 51410324 G A KLK4 Silent p.L211L 0.60 TCGA-GN-A4U3-06 19 54823363 54823363 C T LILRA5 Silent p.G60G 0.28 TCGA-GN-A4U3-06 19 54849767 54849767 G A LILRA4 Silent p.I85I 0.62 TCGA-GN-A4U3-06 19 54866904 54866904 G A LAIR1 Silent p.I279I 0.23 TCGA-GN-A4U3-06 19 56515287 56515287 G A NLRP5 Missense_Mutation p.E90K 0.23 tolerated(0.08) benign(0.373) TCGA-GN-A4U3-06 19 56549392 56549392 C T NLRP5 Silent p.L873L 0.70 TCGA-GN-A4U3-06 19 58384787 58384787 T A ZNF814 Missense_Mutation p.E657D 0.43 deleterious(0.04) possibly_damaging(0.557) TCGA-GN-A4U3-06 19 58967083 58967083 G A ZNF324B Missense_Mutation p.E258K 0.52 tolerated(0.12) probably_damaging(0.981) TCGA-GN-A4U3-06 19 58980668 58980668 C T ZNF324 Missense_Mutation p.S39L 0.25 deleterious(0) benign(0.275) TCGA-GN-A4U3-06 19 6681984 6681984 C T C3 Missense_Mutation p.D1440N 0.27 tolerated(0.46) benign(0.011) TCGA-GN-A4U3-06 19 6760715 6760715 C T SH2D3A Missense_Mutation p.G118E 0.31 tolerated(0.27) benign(0.036) TCGA-GN-A4U3-06 19 7267855 7267855 C A INSR Missense_Mutation p.E51D 0.12 tolerated(0.07) benign(0.001) TCGA-GN-A4U3-06 19 8670572 8670572 G A ADAMTS10 Silent p.L8L 0.53 TCGA-GN-A4U3-06 19 9225637 9225637 G A OR7G1 Missense_Mutation p.S268F 0.23 deleterious(0.04) probably_damaging(0.983) TCGA-GN-A4U3-06 19 9225703 9225703 G A OR7G1 Missense_Mutation p.S246F 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A4U3-06 1 110255641 110255641 C T GSTM5 Intron 0.41 TCGA-GN-A4U3-06 1 1118377 1118377 C T TTLL10 Silent p.P346P 0.32 TCGA-GN-A4U3-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.54 tolerated(0.06) benign(0.006) TCGA-GN-A4U3-06 1 11810268 11810268 C T AGTRAP 3'UTR 0.25 TCGA-GN-A4U3-06 1 120458221 120458221 G A NOTCH2 Missense_Mutation p.P2375L 0.37 tolerated(0.3) possibly_damaging(0.717) TCGA-GN-A4U3-06 1 1263011 1263011 C T GLTPD1 Silent p.F171F 0.29 TCGA-GN-A4U3-06 1 13001395 13001395 C A PRAMEF6 Missense_Mutation p.R96S 0.20 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U3-06 1 152276734 152276734 C T FLG Missense_Mutation p.S3543N 0.57 unknown(0) TCGA-GN-A4U3-06 1 152732749 152732749 C T KPRP Missense_Mutation p.P229S 0.54 tolerated(0.56) benign(0.006) TCGA-GN-A4U3-06 1 154108435 154108435 G A NUP210L Silent p.P288P 0.47 TCGA-GN-A4U3-06 1 154108436 154108436 G A NUP210L Missense_Mutation p.P288L 0.48 deleterious(0) probably_damaging(0.984) TCGA-GN-A4U3-06 1 154960568 154960568 C T FLAD1 Intron 0.38 TCGA-GN-A4U3-06 1 155630959 155630959 G A YY1AP1 Intron 0.33 TCGA-GN-A4U3-06 1 156124321 156124321 C T SEMA4A Intron 0.09 TCGA-GN-A4U3-06 1 156884457 156884457 C T PEAR1 Missense_Mutation p.S994F 0.54 deleterious(0.01) possibly_damaging(0.553) TCGA-GN-A4U3-06 1 157504668 157504668 G A FCRL5 Missense_Mutation p.P473S 0.22 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 1 158435897 158435897 C A OR10K1 Silent p.S182S 0.29 TCGA-GN-A4U3-06 1 158435899 158435899 C T OR10K1 Missense_Mutation p.P183L 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 1 158747291 158747291 G A OR6N2 Silent p.I45I 0.16 TCGA-GN-A4U3-06 1 159277667 159277667 G A FCER1A Missense_Mutation p.R240K 0.53 tolerated(0.37) benign(0.048) TCGA-GN-A4U3-06 1 159558590 159558590 C T APCS 3'UTR 0.47 TCGA-GN-A4U3-06 1 159683618 159683618 G A CRP Silent p.I124I 0.55 TCGA-GN-A4U3-06 1 161092132 161092132 G A DEDD Silent p.T254T 0.48 TCGA-GN-A4U3-06 1 169673786 169673786 C T SELL Missense_Mutation p.G243E 0.62 deleterious(0) probably_damaging(0.989) TCGA-GN-A4U3-06 1 169673787 169673787 C T SELL Missense_Mutation p.G243R 0.62 deleterious(0) probably_damaging(0.964) TCGA-GN-A4U3-06 1 17609361 17609361 G A PADI3 Silent p.G594G 0.19 TCGA-GN-A4U3-06 1 176526198 176526198 C T PAPPA2 Missense_Mutation p.S247F 0.54 tolerated(0.05) benign(0.116) TCGA-GN-A4U3-06 1 197407909 197407909 G A CRB1 Intron 0.64 TCGA-GN-A4U3-06 1 201009792 201009792 C T CACNA1S Silent p.Q1728Q 0.14 TCGA-GN-A4U3-06 1 22418101 22418101 C T CDC42 3'UTR 0.17 TCGA-GN-A4U3-06 1 23782474 23782474 A G ASAP3 Missense_Mutation p.L83S 0.40 deleterious(0) probably_damaging(0.955) TCGA-GN-A4U3-06 1 237947261 237947261 C T RYR2 Silent p.F4083F 0.22 TCGA-GN-A4U3-06 1 247151442 247151442 C T ZNF695 Silent p.R125R 0.54 TCGA-GN-A4U3-06 1 247463733 247463733 G A ZNF496 3'UTR 0.38 TCGA-GN-A4U3-06 1 248059148 248059148 G A OR2W3 Missense_Mutation p.G87E 0.38 deleterious(0.01) probably_damaging(0.95) TCGA-GN-A4U3-06 1 248366453 248366453 C T OR2M3 Silent p.F28F 0.54 TCGA-GN-A4U3-06 1 26349172 26349172 T C EXTL1 Missense_Mutation p.L12P 0.48 deleterious(0) benign(0.184) TCGA-GN-A4U3-06 1 26582060 26582060 C T CEP85 Missense_Mutation p.H203Y 0.30 tolerated(1) benign(0.001) TCGA-GN-A4U3-06 1 28792354 28792354 C A PHACTR4 Silent p.R154R 0.28 TCGA-GN-A4U3-06 1 32133219 32133219 C T COL16A1 Missense_Mutation p.G1105E 0.20 unknown(0) TCGA-GN-A4U3-06 1 32133220 32133220 C T COL16A1 Missense_Mutation p.G1105R 0.20 unknown(0) TCGA-GN-A4U3-06 1 35370320 35370320 G A DLGAP3 Missense_Mutation p.S222F 0.43 tolerated(0.28) benign(0.01) TCGA-GN-A4U3-06 1 36564602 36564602 G A COL8A2 Missense_Mutation p.P227L 0.12 deleterious(0.04) unknown(0) TCGA-GN-A4U3-06 1 36564603 36564603 G A COL8A2 Missense_Mutation p.P227S 0.12 deleterious(0.04) unknown(0) TCGA-GN-A4U3-06 1 41101674 41101674 G A RIMS3 Silent p.I91I 0.29 TCGA-GN-A4U3-06 1 47403704 47403704 C T CYP4A11 Missense_Mutation p.D101N 0.56 tolerated(0.05) possibly_damaging(0.58) TCGA-GN-A4U3-06 1 55136211 55136211 C T MROH7 Silent p.S477S 0.39 TCGA-GN-A4U3-06 1 70832139 70832139 G A HHLA3 Missense_Mutation p.G58E 0.17 tolerated_low_confidence(0.32) probably_damaging(0.969) TCGA-GN-A4U3-06 1 75038245 75038245 A G C1orf173 Missense_Mutation p.L1050S 0.53 tolerated(0.12) benign(0.164) TCGA-GN-A4U3-06 1 75039062 75039062 C T C1orf173 Missense_Mutation p.D778N 0.18 tolerated(0.14) benign(0.138) TCGA-GN-A4U3-06 1 8421297 8421297 C T RERE Missense_Mutation p.G757E 0.18 probably_damaging(0.982) TCGA-GN-A4U3-06 1 92224289 92224289 G A TGFBR3 Missense_Mutation p.P89S 0.33 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U3-06 20 18163916 18163916 C T CSRP2BP Missense_Mutation p.S653F 0.57 deleterious(0) benign(0.396) TCGA-GN-A4U3-06 20 25206246 25206246 C T ENTPD6 3'UTR 0.24 TCGA-GN-A4U3-06 20 25259080 25259080 C T PYGB Silent p.F327F 0.25 TCGA-GN-A4U3-06 20 34761848 34761848 C T EPB41L1 Missense_Mutation p.S50F 0.33 deleterious(0.01) benign(0.077) TCGA-GN-A4U3-06 20 40747130 40747130 C T PTPRT Silent p.Q965Q 0.28 TCGA-GN-A4U3-06 20 42887208 42887208 G A GDAP1L1 Missense_Mutation p.D170N 0.38 tolerated(0.13) possibly_damaging(0.796) TCGA-GN-A4U3-06 20 49510604 49510604 C A ADNP Missense_Mutation p.R216L 0.29 tolerated(0.32) benign(0.048) TCGA-GN-A4U3-06 20 57415786 57415786 G A RP4-806M20.3 5'Flank 0.29 TCGA-GN-A4U3-06 20 57768889 57768889 C T ZNF831 Missense_Mutation p.P939S 0.23 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U3-06 20 57768890 57768890 C T ZNF831 Missense_Mutation p.P939L 0.23 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U3-06 20 8722157 8722157 G A PLCB1 Missense_Mutation p.M820I 0.48 tolerated(0.18) benign(0.022) TCGA-GN-A4U3-06 21 17443679 17443679 G A LINC00478 RNA 0.36 TCGA-GN-A4U3-06 21 38610784 38610784 G A DSCR3 Missense_Mutation p.H110Y 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 21 39426791 39426791 G A DSCR4 3'UTR 0.36 TCGA-GN-A4U3-06 21 41137517 41137517 G T IGSF5 Missense_Mutation p.K52N 0.56 tolerated(0.29) possibly_damaging(0.869) TCGA-GN-A4U3-06 21 42778860 42778860 C T MX2 Missense_Mutation p.P614S 0.29 tolerated(1) benign(0.001) TCGA-GN-A4U3-06 21 44323423 44323423 C T NDUFV3 Missense_Mutation p.P101S 0.63 tolerated(0.23) probably_damaging(0.979) TCGA-GN-A4U3-06 22 18846141 18846141 G A BCRP7 RNA 0.17 TCGA-GN-A4U3-06 22 20760871 20760871 C T ZNF74 Silent p.I516I 0.23 TCGA-GN-A4U3-06 22 21101926 21101926 G T PI4KA Missense_Mutation p.A1103D 0.38 deleterious(0) probably_damaging(0.991) TCGA-GN-A4U3-06 22 26299688 26299688 G A MYO18B Missense_Mutation p.E1680K 0.29 tolerated(0.14) benign(0.022) TCGA-GN-A4U3-06 22 32756532 32756532 G A RFPL3 Missense_Mutation p.G223R 0.55 deleterious(0.04) benign(0.429) TCGA-GN-A4U3-06 2 108487443 108487443 G A RGPD4 Missense_Mutation p.G995R 0.21 deleterious(0) probably_damaging(0.986) TCGA-GN-A4U3-06 2 120221704 120221704 G A SCTR Missense_Mutation p.H211Y 0.21 tolerated(0.88) benign(0.026) TCGA-GN-A4U3-06 2 133540481 133540481 G A NCKAP5 Silent p.I1301I 0.46 TCGA-GN-A4U3-06 2 136564892 136564892 C T LCT Missense_Mutation p.G1327S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U3-06 2 136566053 136566053 C T LCT Silent p.R1288R 0.41 TCGA-GN-A4U3-06 2 143713832 143713832 C T KYNU Missense_Mutation p.P166S 0.17 deleterious(0.03) possibly_damaging(0.535) TCGA-GN-A4U3-06 2 152695823 152695823 G A CACNB4 Missense_Mutation p.S458F 0.18 deleterious_low_confidence(0) benign(0.429) TCGA-GN-A4U3-06 2 158272402 158272402 C T CYTIP Silent p.E289E 0.50 TCGA-GN-A4U3-06 2 160092582 160092582 T A WDSUB1 Missense_Mutation p.M465L 0.39 tolerated(0.11) probably_damaging(0.99) TCGA-GN-A4U3-06 2 165948884 165948884 G A SCN3A Silent p.L1563L 0.54 TCGA-GN-A4U3-06 2 166892978 166892978 A T SCN1A Silent p.T1003T 0.14 TCGA-GN-A4U3-06 2 173830404 173830404 C T RAPGEF4 Silent p.L271L 0.37 TCGA-GN-A4U3-06 2 179509338 179509338 G A TTN Missense_Mutation p.P13472S 0.26 TCGA-GN-A4U3-06 2 179594669 179594669 G A TTN Missense_Mutation p.P6104L 0.42 TCGA-GN-A4U3-06 2 179642537 179642537 G A TTN Silent p.V1458V 0.40 TCGA-GN-A4U3-06 2 179658157 179658157 C T TTN Missense_Mutation p.E504K 0.37 TCGA-GN-A4U3-06 2 185802781 185802781 C T ZNF804A Silent p.L886L 0.36 TCGA-GN-A4U3-06 2 186678752 186678752 G A FSIP2 Missense_Mutation p.E6859K 0.13 benign(0.002) TCGA-GN-A4U3-06 2 196545613 196545613 C T SLC39A10 Missense_Mutation p.P283S 0.46 tolerated(0.67) benign(0.001) TCGA-GN-A4U3-06 2 198001381 198001381 G A ANKRD44 Missense_Mutation p.R66C 0.47 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U3-06 2 233128061 233128061 G A DIS3L2 Missense_Mutation p.E524K 0.43 deleterious(0.01) benign(0.091) TCGA-GN-A4U3-06 2 234638020 234638020 C T UGT1A3 Missense_Mutation p.S83L 0.50 deleterious(0.02) benign(0.105) TCGA-GN-A4U3-06 2 238267869 238267869 C T COL6A3 Missense_Mutation p.D2112N 0.26 possibly_damaging(0.484) TCGA-GN-A4U3-06 2 26534849 26534849 G A GPR113 Missense_Mutation p.L583F 0.43 tolerated(0.67) benign(0.021) TCGA-GN-A4U3-06 2 27607720 27607720 G A PPM1G Silent p.S215S 0.49 TCGA-GN-A4U3-06 2 29039061 29039061 G A SPDYA Missense_Mutation p.G61R 0.51 tolerated(0.2) possibly_damaging(0.729) TCGA-GN-A4U3-06 2 29294939 29294939 G A C2orf71 Missense_Mutation p.S730F 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 2 29295718 29295718 G A C2orf71 Silent p.S470S 0.23 TCGA-GN-A4U3-06 2 33412023 33412023 C T LTBP1 Silent p.V434V 0.51 TCGA-GN-A4U3-06 2 36986129 36986129 G A VIT Missense_Mutation p.G143S 0.43 deleterious(0.04) possibly_damaging(0.89) TCGA-GN-A4U3-06 2 44115656 44115656 T A LRPPRC 3'UTR 0.35 TCGA-GN-A4U3-06 2 50699455 50699455 C T NRXN1 Silent p.Q1115Q 0.49 TCGA-GN-A4U3-06 2 54850615 54850615 G A SPTBN1 Splice_Site p.X355_splice 0.37 TCGA-GN-A4U3-06 2 55894190 55894190 C T PNPT1 Missense_Mutation p.S371N 0.48 tolerated(0.29) benign(0.007) TCGA-GN-A4U3-06 2 68622964 68622964 C T PLEK 3'UTR 0.41 TCGA-GN-A4U3-06 2 73646435 73646435 C T ALMS1 Missense_Mutation p.S212F 0.46 probably_damaging(0.998) TCGA-GN-A4U3-06 2 84806789 84806789 G A DNAH6 Missense_Mutation p.E739K 0.20 tolerated(0.4) benign(0.011) TCGA-GN-A4U3-06 2 85663710 85663710 A G SH2D6 3'UTR 0.39 TCGA-GN-A4U3-06 2 99995850 99995850 C T EIF5B Missense_Mutation p.P674S 0.24 probably_damaging(0.999) TCGA-GN-A4U3-06 3 10953845 10953845 G A SLC6A11 Missense_Mutation p.G321E 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 3 113672611 113672611 C T ZDHHC23 Missense_Mutation p.R76C 0.40 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U3-06 3 119134265 119134265 G A ARHGAP31 Silent p.Q1163Q 0.16 TCGA-GN-A4U3-06 3 121341740 121341740 C T FBXO40 Silent p.F488F 0.42 TCGA-GN-A4U3-06 3 123366138 123366138 G A MYLK Missense_Mutation p.H1518Y 0.36 deleterious(0) benign(0.419) TCGA-GN-A4U3-06 3 126382223 126382223 C T NUP210P1 RNA 0.25 TCGA-GN-A4U3-06 3 135864065 135864065 A G PPP2R3A 3'UTR 0.44 TCGA-GN-A4U3-06 3 135864066 135864066 G A PPP2R3A 3'UTR 0.44 TCGA-GN-A4U3-06 3 136729061 136729061 C T IL20RB Missense_Mutation p.S311L 0.53 deleterious_low_confidence(0.02) possibly_damaging(0.587) TCGA-GN-A4U3-06 3 138738729 138738729 G A PRR23B Missense_Mutation p.R259W 0.14 deleterious(0) probably_damaging(0.957) TCGA-GN-A4U3-06 3 1414070 1414070 C T CNTN6 Missense_Mutation p.P527L 0.49 deleterious(0) probably_damaging(0.955) TCGA-GN-A4U3-06 3 142561823 142561823 G A PCOLCE2 Silent p.D172D 0.24 TCGA-GN-A4U3-06 3 146177757 146177757 G A PLSCR2 Missense_Mutation p.P52S 0.49 tolerated(0.19) benign(0.033) TCGA-GN-A4U3-06 3 148614415 148614415 C T CPA3 Missense_Mutation p.S392F 0.19 deleterious(0) possibly_damaging(0.897) TCGA-GN-A4U3-06 3 161147233 161147233 T A RP11-3P17.4 RNA 0.42 TCGA-GN-A4U3-06 3 161221472 161221472 C T OTOL1 Silent p.Y392Y 0.24 TCGA-GN-A4U3-06 3 164786620 164786620 C T SI Splice_Site p.X125_splice 0.23 TCGA-GN-A4U3-06 3 183388985 183388985 C T KLHL24 Missense_Mutation p.P463L 0.16 tolerated(0.49) benign(0.066) TCGA-GN-A4U3-06 3 183681340 183681340 G A ABCC5 Missense_Mutation p.R690C 0.20 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U3-06 3 183818117 183818117 T C HTR3E 5'Flank 0.49 TCGA-GN-A4U3-06 3 184769774 184769774 C T VPS8 Silent p.F1416F 0.43 TCGA-GN-A4U3-06 3 190030667 190030667 G A CLDN1 Missense_Mutation p.L128F 0.39 deleterious(0.03) possibly_damaging(0.505) TCGA-GN-A4U3-06 3 193029730 193029730 C T ATP13A5 Missense_Mutation p.E774K 0.48 tolerated(0.17) benign(0.314) TCGA-GN-A4U3-06 3 193080389 193080389 C T ATP13A5 Nonsense_Mutation p.W141* 0.41 TCGA-GN-A4U3-06 3 21462714 21462714 G T ZNF385D Missense_Mutation p.P394T 0.29 deleterious(0) probably_damaging(0.981) TCGA-GN-A4U3-06 3 3189726 3189726 T A TRNT1 Missense_Mutation p.I398N 0.20 deleterious(0) benign(0.418) TCGA-GN-A4U3-06 3 36897940 36897940 C T TRANK1 Nonsense_Mutation p.W1047* 0.62 TCGA-GN-A4U3-06 3 369855 369855 C T CHL1 Missense_Mutation p.S68L 0.45 tolerated(0.13) benign(0.002) TCGA-GN-A4U3-06 3 38182010 38182010 C T MYD88 Silent p.L212L 0.18 TCGA-GN-A4U3-06 3 38812807 38812807 G A SCN10A Missense_Mutation p.P188S 0.47 deleterious(0) probably_damaging(0.972) TCGA-GN-A4U3-06 3 40529302 40529302 G A ZNF619 Missense_Mutation p.G474E 0.28 deleterious(0) possibly_damaging(0.802) TCGA-GN-A4U3-06 3 4354817 4354817 G A SETMAR Missense_Mutation p.R131K 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A4U3-06 3 44492363 44492363 G A ZNF445 Silent p.L230L 0.50 TCGA-GN-A4U3-06 3 44968119 44968119 G A ZDHHC3 3'UTR 0.37 TCGA-GN-A4U3-06 3 48627937 48627937 C T COL7A1 Missense_Mutation p.V621I 0.20 unknown(0) TCGA-GN-A4U3-06 3 52328419 52328419 C T GLYCTK 3'Flank 0.45 TCGA-GN-A4U3-06 3 56787532 56787533 - T ARHGEF3 Frame_Shift_Ins p.A179Gfs*4 0.21 TCGA-GN-A4U3-06 3 58106965 58106965 C T FLNB Intron 0.42 TCGA-GN-A4U3-06 3 66434667 66434667 C T LRIG1 Missense_Mutation p.D607N 0.18 tolerated(0.06) benign(0.443) TCGA-GN-A4U3-06 3 7188181 7188181 G A GRM7 Missense_Mutation p.D188N 0.20 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U3-06 3 86115981 86115981 A T CADM2 3'Flank 0.50 TCGA-GN-A4U3-06 3 98073321 98073321 C T OR5K4 Silent p.I208I 0.38 TCGA-GN-A4U3-06 4 100260747 100260747 G A ADH1C Missense_Mutation p.R364C 0.38 possibly_damaging(0.877) TCGA-GN-A4U3-06 4 100341902 100341902 G A ADH7 Silent p.L225L 0.64 TCGA-GN-A4U3-06 4 103964482 103964482 G A SLC9B2 Missense_Mutation p.L373F 0.25 deleterious(0.01) possibly_damaging(0.691) TCGA-GN-A4U3-06 4 107171634 107171634 C A TBCK Missense_Mutation p.G200V 0.17 tolerated(0.08) possibly_damaging(0.696) TCGA-GN-A4U3-06 4 114170964 114170964 C T ANK2 Silent p.D312D 0.40 TCGA-GN-A4U3-06 4 122682721 122682721 G A TMEM155 Missense_Mutation p.R62C 0.32 deleterious(0) benign(0.237) TCGA-GN-A4U3-06 4 123664082 123664082 G A BBS12 Silent p.V345V 0.67 TCGA-GN-A4U3-06 4 124323801 124323801 C T SPRY1 3'UTR 0.24 TCGA-GN-A4U3-06 4 145038046 145038046 C T GYPA Silent p.T106T 0.50 TCGA-GN-A4U3-06 4 187197476 187197476 C T F11 Silent p.I229I 0.24 TCGA-GN-A4U3-06 4 187549725 187549725 G A FAT1 Missense_Mutation p.R1506C 0.58 probably_damaging(0.982) TCGA-GN-A4U3-06 4 20550739 20550739 C T SLIT2 Missense_Mutation p.S826F 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 4 22422357 22422357 G A GPR125 Intron 0.60 TCGA-GN-A4U3-06 4 25667806 25667806 G A SLC34A2 Missense_Mutation p.G146R 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U3-06 4 26483789 26483789 C T CCKAR Missense_Mutation p.R253K 0.54 tolerated(0.13) benign(0.011) TCGA-GN-A4U3-06 4 40127760 40127760 C T N4BP2 Missense_Mutation p.S1446F 0.57 deleterious(0) possibly_damaging(0.729) TCGA-GN-A4U3-06 4 41663504 41663504 G A LIMCH1 Missense_Mutation p.G650E 0.47 tolerated(0.85) benign(0.001) TCGA-GN-A4U3-06 4 419761 419761 A G ABCA11P RNA 0.23 TCGA-GN-A4U3-06 4 4239621 4239621 G A TMEM128 Missense_Mutation p.P123L 0.23 deleterious(0) probably_damaging(0.978) TCGA-GN-A4U3-06 4 62845433 62845433 C T LPHN3 Silent p.I918I 0.27 TCGA-GN-A4U3-06 4 71398215 71398215 G A AMTN 3'UTR 0.22 TCGA-GN-A4U3-06 4 88902848 88902848 C T SPP1 Silent p.F146F 0.36 TCGA-GN-A4U3-06 4 91701693 91701693 G A CCSER1 Intron 0.33 TCGA-GN-A4U3-06 5 11565118 11565118 G A CTNND2 Silent p.I75I 0.75 TCGA-GN-A4U3-06 5 140176022 140176022 C T PCDHA2 Silent p.S491S 0.89 TCGA-GN-A4U3-06 5 140230315 140230315 G A PCDHA9 Silent p.V745V 0.79 TCGA-GN-A4U3-06 5 140230316 140230316 G A PCDHA9 Missense_Mutation p.G746R 0.78 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-GN-A4U3-06 5 149509490 149509490 G A PDGFRB Missense_Mutation p.S470F 0.40 deleterious(0.02) possibly_damaging(0.805) TCGA-GN-A4U3-06 5 161580244 161580244 G A GABRG2 Missense_Mutation p.R473Q 0.41 tolerated(0.4) possibly_damaging(0.673) TCGA-GN-A4U3-06 5 223656 223656 G A SDHA Silent p.K41K 0.83 TCGA-GN-A4U3-06 5 35065218 35065218 G A PRLR Silent p.P614P 0.33 TCGA-GN-A4U3-06 5 42711363 42711363 G A GHR Missense_Mutation p.E225K 0.42 tolerated(0.09) probably_damaging(0.994) TCGA-GN-A4U3-06 5 79031122 79031122 C T CMYA5 Silent p.F2178F 0.92 TCGA-GN-A4U3-06 6 107076868 107076868 C T RTN4IP1 Missense_Mutation p.R10K 0.85 tolerated_low_confidence(0.21) benign(0) TCGA-GN-A4U3-06 6 116747781 116747781 C T DSE Missense_Mutation p.S154F 0.37 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U3-06 6 116747782 116747782 C T DSE Silent p.S154S 0.37 TCGA-GN-A4U3-06 6 131186710 131186710 G A EPB41L2 Missense_Mutation p.S932F 0.39 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U3-06 6 18465228 18465228 C A RNF144B Missense_Mutation p.P281Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U3-06 6 24596767 24596767 G A KIAA0319 Silent p.I45I 0.38 TCGA-GN-A4U3-06 6 28542657 28542657 C T SCAND3 Missense_Mutation p.E609K 0.47 deleterious_low_confidence(0) benign(0.056) TCGA-GN-A4U3-06 6 32065783 32065783 C T TNXB Missense_Mutation p.E65K 0.46 probably_damaging(0.953) TCGA-GN-A4U3-06 6 32712940 32712940 C T HLA-DQA2 Silent p.D29D 0.43 TCGA-GN-A4U3-06 6 32847003 32847003 C T PPP1R2P1 RNA 0.40 TCGA-GN-A4U3-06 6 35762855 35762855 G A CLPS 3'UTR 0.10 TCGA-GN-A4U3-06 6 35773744 35773744 C T LHFPL5 Silent p.F99F 0.45 TCGA-GN-A4U3-06 6 38704942 38704942 A T DNAH8 Missense_Mutation p.N71Y 0.27 possibly_damaging(0.691) TCGA-GN-A4U3-06 6 43623379 43623379 C T RSPH9 Silent p.A143A 0.42 TCGA-GN-A4U3-06 6 49604372 49604372 G A RHAG Missense_Mutation p.P52S 0.40 deleterious(0.04) benign(0.083) TCGA-GN-A4U3-06 6 54806017 54806017 G A FAM83B Missense_Mutation p.E750K 0.38 deleterious(0.04) benign(0.424) TCGA-GN-A4U3-06 6 70983763 70983763 G A COL9A1 Missense_Mutation p.S351L 0.69 possibly_damaging(0.856) TCGA-GN-A4U3-06 6 71234558 71234558 G C FAM135A Missense_Mutation p.E591Q 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-GN-A4U3-06 6 73787509 73787509 G A KCNQ5 Missense_Mutation p.G273R 0.88 deleterious(0) probably_damaging(1) TCGA-GN-A4U3-06 6 75887458 75887458 C T COL12A1 Silent p.T786T 0.80 TCGA-GN-A4U3-06 6 90605755 90605755 G A GJA10 Missense_Mutation p.G523E 0.35 tolerated_low_confidence(1) benign(0) TCGA-GN-A4U3-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.28 tolerated(0.12) benign(0.063) TCGA-GN-A4U3-06 7 120480126 120480126 A G TSPAN12 Missense_Mutation p.M35T 0.55 tolerated(0.08) benign(0.02) TCGA-GN-A4U3-06 7 120770221 120770221 G A CPED1 Missense_Mutation p.E484K 0.50 tolerated(0.18) benign(0.013) TCGA-GN-A4U3-06 7 130023604 130023604 A G CPA1 Missense_Mutation p.N222S 0.52 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U3-06 7 138424313 138424313 C T ATP6V0A4 Missense_Mutation p.G515E 0.34 deleterious(0.04) probably_damaging(1) TCGA-GN-A4U3-06 7 140402711 140402711 C T NDUFB2 Silent p.P48P 0.65 TCGA-GN-A4U3-06 7 141752130 141752130 G A MGAM Missense_Mutation p.E948K 0.47 tolerated(0.79) benign(0.002) TCGA-GN-A4U3-06 7 141802440 141802440 G A MGAM Silent p.G1762G 0.32 TCGA-GN-A4U3-06 7 142428803 142428803 C T TRBV28 Nonsense_Mutation p.R55* 0.20 TCGA-GN-A4U3-06 7 144062335 144062335 C T ARHGEF5 Missense_Mutation p.S858F 0.13 deleterious(0) possibly_damaging(0.736) TCGA-GN-A4U3-06 7 144097351 144097351 T C NOBOX Missense_Mutation p.D300G 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A4U3-06 7 149557668 149557668 C T ZNF862 Silent p.F473F 0.16 TCGA-GN-A4U3-06 7 1516076 1516076 G A INTS1 Silent p.L1723L 0.19 TCGA-GN-A4U3-06 7 2472236 2472236 G A CHST12 5'UTR 0.21 TCGA-GN-A4U3-06 7 31855553 31855553 C T PDE1C Missense_Mutation p.E660K 0.39 tolerated_low_confidence(0.11) benign(0.001) TCGA-GN-A4U3-06 7 38810819 38810819 A T VPS41 Missense_Mutation p.N388K 0.33 tolerated(0.43) benign(0.013) TCGA-GN-A4U3-06 7 4213897 4213897 G A SDK1 Missense_Mutation p.R1615K 0.14 tolerated(0.11) benign(0.444) TCGA-GN-A4U3-06 7 4218134 4218134 C T SDK1 Missense_Mutation p.R1672C 0.16 deleterious(0) probably_damaging(0.959) TCGA-GN-A4U3-06 7 4249767 4249767 G A SDK1 Missense_Mutation p.V1838M 0.28 deleterious(0.03) possibly_damaging(0.516) TCGA-GN-A4U3-06 7 53103832 53103832 G A POM121L12 Silent p.Q156Q 0.41 TCGA-GN-A4U3-06 7 5342629 5342629 G A SLC29A4 3'UTR 0.29 TCGA-GN-A4U3-06 7 55499046 55499046 G A LANCL2 3'UTR 0.43 TCGA-GN-A4U3-06 7 73280104 73280104 C T WBSCR28 Silent p.P233P 0.44 TCGA-GN-A4U3-06 7 75174475 75174475 G A HIP1 Silent p.S857S 0.43 TCGA-GN-A4U3-06 7 83631273 83631273 G A SEMA3A Missense_Mutation p.R484W 0.15 deleterious(0) possibly_damaging(0.787) TCGA-GN-A4U3-06 7 89912291 89912291 C T C7orf63 Silent p.L486L 0.50 TCGA-GN-A4U3-06 7 92837993 92837993 C T HEPACAM2 Silent p.E304E 0.18 TCGA-GN-A4U3-06 7 92838160 92838160 C T HEPACAM2 Missense_Mutation p.D249N 0.16 tolerated(0.07) benign(0.065) TCGA-GN-A4U3-06 7 94156486 94156486 C T CASD1 Missense_Mutation p.P122S 0.21 tolerated(0.51) benign(0.011) TCGA-GN-A4U3-06 7 99799946 99799946 C T STAG3 Missense_Mutation p.P849L 0.19 tolerated(0.12) benign(0.002) TCGA-GN-A4U3-06 8 110431368 110431368 G A PKHD1L1 Silent p.T801T 0.42 TCGA-GN-A4U3-06 8 110445374 110445374 C T PKHD1L1 Missense_Mutation p.S1090F 0.54 deleterious(0) possibly_damaging(0.779) TCGA-GN-A4U3-06 8 139737659 139737659 G A COL22A1 Missense_Mutation p.P722S 0.42 unknown(0) TCGA-GN-A4U3-06 8 141542022 141542022 A T AGO2 3'UTR 0.38 TCGA-GN-A4U3-06 8 143846097 143846097 C T LYNX1 Missense_Mutation p.D108N 0.32 tolerated(0.13) possibly_damaging(0.517) TCGA-GN-A4U3-06 8 144810155 144810155 G A FAM83H Silent p.G492G 0.16 TCGA-GN-A4U3-06 8 144998535 144998535 G A PLEC Silent p.I1991I 0.43 TCGA-GN-A4U3-06 8 17838132 17838132 G A PCM1 Missense_Mutation p.E1326K 0.59 deleterious(0.05) possibly_damaging(0.857) TCGA-GN-A4U3-06 8 2021456 2021456 C T MYOM2 Silent p.F332F 0.19 TCGA-GN-A4U3-06 8 24188831 24188831 G A ADAM28 Silent p.G424G 0.31 TCGA-GN-A4U3-06 8 32600479 32600479 C T NRG1 Intron 0.55 TCGA-GN-A4U3-06 8 33449510 33449510 C T DUSP26 3'UTR 0.57 TCGA-GN-A4U3-06 8 54163388 54163388 G A OPRK1 Silent p.F70F 0.58 TCGA-GN-A4U3-06 8 73849693 73849693 G A KCNB2 Silent p.K701K 0.19 TCGA-GN-A4U3-06 8 74205862 74205862 A T RPL7 5'UTR 0.54 TCGA-GN-A4U3-06 8 87076436 87076436 C T PSKH2 Missense_Mutation p.D204N 0.51 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 8 94934464 94934464 G A PDP1 Silent p.K84K 0.35 TCGA-GN-A4U3-06 9 100672490 100672490 G A C9orf156 Missense_Mutation p.P273L 0.48 tolerated(0.11) benign(0.004) TCGA-GN-A4U3-06 9 105768046 105768046 G A CYLC2 3'UTR 0.40 TCGA-GN-A4U3-06 9 120466777 120466777 G A TLR4 Silent p.G9G 0.42 TCGA-GN-A4U3-06 9 126164872 126164872 G A DENND1A Intron 0.47 TCGA-GN-A4U3-06 9 130985118 130985118 T C DNM1 Missense_Mutation p.I392T 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U3-06 9 131709390 131709404 GTAGCAGCCGGTCCC - DOLK Nonsense_Mutation p.W60_Q65delins* 0.24 TCGA-GN-A4U3-06 9 133779442 133779442 T C FIBCD1 3'UTR 0.24 TCGA-GN-A4U3-06 9 135984183 135984183 G A RALGDS Missense_Mutation p.P219S 0.43 tolerated(0.17) benign(0.345) TCGA-GN-A4U3-06 9 139562789 139562789 G A EGFL7 Missense_Mutation p.G19S 0.42 tolerated(0.59) benign(0.118) TCGA-GN-A4U3-06 9 140081953 140081953 G A ANAPC2 Silent p.F240F 0.40 TCGA-GN-A4U3-06 9 37002746 37002746 G A PAX5 Missense_Mutation p.S168F 0.33 deleterious(0) possibly_damaging(0.677) TCGA-GN-A4U3-06 9 732594 732594 T C KANK1 Silent p.P1074P 0.45 TCGA-GN-A4U3-06 9 90500767 90500767 C T SPATA31E1 Silent p.V455V 0.41 TCGA-GN-A4U3-06 9 93375546 93375546 C T DIRAS2 Silent p.R188R 0.32 TCGA-GN-A4U3-06 X 10085442 10085442 C T WWC3 Missense_Mutation p.S448F 0.81 deleterious(0) probably_damaging(0.99) TCGA-GN-A4U3-06 X 117676893 117676893 C T DOCK11 Missense_Mutation p.S75L 0.89 tolerated(0.21) possibly_damaging(0.448) TCGA-GN-A4U3-06 X 13803745 13803745 C T GPM6B Missense_Mutation p.E122K 0.89 tolerated(0.37) benign(0.067) TCGA-GN-A4U3-06 X 140969364 140969364 G A MAGEC3 Missense_Mutation p.E231K 0.84 tolerated(0.11) possibly_damaging(0.621) TCGA-GN-A4U3-06 X 1584448 1584448 G A P2RY8 Missense_Mutation p.S335F 0.39 deleterious(0) possibly_damaging(0.656) TCGA-GN-A4U3-06 X 34148572 34148572 G A FAM47A Silent p.L608L 0.89 TCGA-GN-A4U3-06 X 47098764 47098764 C G USP11 Missense_Mutation p.R144G 1.00 tolerated(0.37) possibly_damaging(0.46) TCGA-GN-A4U3-06 X 49028420 49028420 G A PLP2 Missense_Mutation p.G25R 0.87 deleterious(0) probably_damaging(0.977) TCGA-GN-A4U3-06 X 53271020 53271020 G A IQSEC2 Silent p.P987P 1.00 TCGA-GN-A4U3-06 X 73066410 73066410 C T XIST RNA 0.78 TCGA-GN-A4U3-06 X 73960868 73960868 G A KIAA2022 Missense_Mutation p.S1175L 0.89 tolerated(0.06) benign(0.353) TCGA-GN-A4U4-06 10 101659801 101659801 C T DNMBP Silent p.R859R 0.39 TCGA-GN-A4U4-06 10 102249834 102249834 G A SEC31B Missense_Mutation p.L966F 0.28 tolerated(0.23) benign(0.035) TCGA-GN-A4U4-06 10 105362514 105362514 C T SH3PXD2A Missense_Mutation p.D793N 0.37 tolerated(0.08) possibly_damaging(0.577) TCGA-GN-A4U4-06 10 106121864 106121864 G A CCDC147 Silent p.E125E 0.49 TCGA-GN-A4U4-06 10 106960878 106960878 G A SORCS3 Missense_Mutation p.G710R 0.37 deleterious(0) benign(0.274) TCGA-GN-A4U4-06 10 106960879 106960879 G A SORCS3 Missense_Mutation p.G710E 0.38 deleterious(0.01) benign(0.298) TCGA-GN-A4U4-06 10 108469040 108469040 A C SORCS1 Missense_Mutation p.F362V 0.32 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 10 108469041 108469041 A T SORCS1 Silent p.P361P 0.32 TCGA-GN-A4U4-06 10 115534607 115534607 G A PLEKHS1 Missense_Mutation p.E262K 0.39 tolerated(0.5) benign(0.051) TCGA-GN-A4U4-06 10 116304847 116304847 G A ABLIM1 Missense_Mutation p.P271S 0.42 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.33 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 10 125530481 125530481 C T CPXM2 Silent p.L351L 0.36 TCGA-GN-A4U4-06 10 17277176 17277176 C T VIM Silent p.S339S 0.34 TCGA-GN-A4U4-06 10 24762478 24762478 G A KIAA1217 Missense_Mutation p.E390K 0.36 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U4-06 10 24813339 24813339 C T KIAA1217 Silent p.V848V 0.39 TCGA-GN-A4U4-06 10 24873282 24873282 G A ARHGAP21 3'UTR 0.40 TCGA-GN-A4U4-06 10 28023495 28023495 C T MKX Missense_Mutation p.G243E 0.40 tolerated(1) benign(0.009) TCGA-GN-A4U4-06 10 28409178 28409178 C T MPP7 Missense_Mutation p.E278K 0.42 tolerated(0.12) possibly_damaging(0.477) TCGA-GN-A4U4-06 10 29820946 29820946 C T SVIL Missense_Mutation p.R665Q 0.38 deleterious(0.03) probably_damaging(0.977) TCGA-GN-A4U4-06 10 31138999 31138999 G A ZNF438 Missense_Mutation p.S112F 0.33 deleterious(0) possibly_damaging(0.556) TCGA-GN-A4U4-06 10 31809560 31809560 C T ZEB1 Nonsense_Mutation p.Q434* 0.32 TCGA-GN-A4U4-06 10 37442503 37442503 C T ANKRD30A Missense_Mutation p.L515F 0.10 tolerated(0.14) possibly_damaging(0.86) TCGA-GN-A4U4-06 10 37454062 37454062 A G ANKRD30A Silent p.E625E 0.35 TCGA-GN-A4U4-06 10 37454063 37454063 G A ANKRD30A Missense_Mutation p.E626K 0.35 tolerated(0.56) benign(0.032) TCGA-GN-A4U4-06 10 44876285 44876285 G A CXCL12 Silent p.F35F 0.38 TCGA-GN-A4U4-06 10 47087225 47087225 G A NPY4R Missense_Mutation p.G148S 0.21 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U4-06 10 48428968 48428968 C T GDF10 Silent p.L306L 0.30 TCGA-GN-A4U4-06 10 50594795 50594795 C T DRGX Missense_Mutation p.R120K 0.40 tolerated(0.16) benign(0.105) TCGA-GN-A4U4-06 10 50678350 50678350 C T ERCC6 Missense_Mutation p.G1219E 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 10 50835683 50835683 C T CHAT Silent p.F321F 0.41 TCGA-GN-A4U4-06 10 53459239 53459239 G A CSTF2T Missense_Mutation p.P24L 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A4U4-06 10 55826535 55826535 G A PCDH15 Silent p.A734A 0.30 TCGA-GN-A4U4-06 10 55826536 55826536 G A PCDH15 Missense_Mutation p.A734V 0.31 tolerated(0.1) benign(0.241) TCGA-GN-A4U4-06 10 5951255 5951255 G A FBXO18 Missense_Mutation p.G391R 0.41 deleterious(0.02) possibly_damaging(0.787) TCGA-GN-A4U4-06 10 5951256 5951256 G A FBXO18 Missense_Mutation p.G391E 0.42 tolerated(0.2) benign(0.047) TCGA-GN-A4U4-06 10 61829912 61829912 G A ANK3 Missense_Mutation p.P3576L 0.41 benign(0.055) TCGA-GN-A4U4-06 10 61832037 61832037 C T ANK3 Missense_Mutation p.E2868K 0.41 possibly_damaging(0.803) TCGA-GN-A4U4-06 10 68526075 68526075 C T CTNNA3 Missense_Mutation p.E410K 0.33 tolerated(0.11) possibly_damaging(0.57) TCGA-GN-A4U4-06 10 70730096 70730096 C T DDX21 Missense_Mutation p.A459V 0.42 tolerated(0.27) benign(0.016) TCGA-GN-A4U4-06 10 72083658 72083658 C T LRRC20 Missense_Mutation p.A121T 0.33 tolerated(0.81) possibly_damaging(0.787) TCGA-GN-A4U4-06 10 72292479 72292479 G A PALD1 Missense_Mutation p.D246N 0.37 deleterious(0.01) possibly_damaging(0.527) TCGA-GN-A4U4-06 10 73269889 73269889 G A CDH23-AS1 Intron 0.34 TCGA-GN-A4U4-06 10 73822656 73822656 G A SPOCK2 Silent p.I379I 0.27 TCGA-GN-A4U4-06 10 8111539 8111539 G A GATA3 Missense_Mutation p.G343E 0.37 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 10 85967974 85967974 C T CDHR1 Silent p.T336T 0.38 TCGA-GN-A4U4-06 10 88767442 88767442 T C RP11-96C23.10 3'Flank 0.32 TCGA-GN-A4U4-06 10 96748641 96748641 G A CYP2C9 Missense_Mutation p.M443I 0.36 deleterious(0) possibly_damaging(0.869) TCGA-GN-A4U4-06 10 98742691 98742691 C T C10orf12 Missense_Mutation p.S515F 0.45 deleterious(0) probably_damaging(0.937) TCGA-GN-A4U4-06 11 101375456 101375456 G A TRPC6 Nonsense_Mutation p.R82* 0.36 TCGA-GN-A4U4-06 11 104896997 104896997 G A CASP1 Silent p.F401F 0.41 TCGA-GN-A4U4-06 11 10517195 10517195 G A AMPD3 Missense_Mutation p.E458K 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 11 114392862 114392862 C T NXPE1 Missense_Mutation p.G349E 0.43 deleterious(0.05) possibly_damaging(0.783) TCGA-GN-A4U4-06 11 116658738 116658738 C T ZNF259 5'UTR 0.78 TCGA-GN-A4U4-06 11 118245918 118245918 G A UBE4A Missense_Mutation p.R482Q 0.35 tolerated(0.41) benign(0.04) TCGA-GN-A4U4-06 11 119548540 119548540 G A PVRL1 Missense_Mutation p.T153I 0.43 deleterious(0.02) possibly_damaging(0.641) TCGA-GN-A4U4-06 11 119999149 119999149 C T TRIM29 Missense_Mutation p.D287N 0.37 tolerated(0.18) probably_damaging(0.999) TCGA-GN-A4U4-06 11 120008249 120008249 G A TRIM29 Missense_Mutation p.S164F 0.41 deleterious(0.05) benign(0.352) TCGA-GN-A4U4-06 11 120998805 120998805 C T TECTA Missense_Mutation p.P707S 0.36 tolerated(0.17) benign(0.175) TCGA-GN-A4U4-06 11 123900690 123900690 C T OR10G8 Missense_Mutation p.R121C 0.36 deleterious(0.01) probably_damaging(0.957) TCGA-GN-A4U4-06 11 124253104 124253104 T C OR8B2 Missense_Mutation p.I46V 0.27 tolerated_low_confidence(0.15) benign(0.005) TCGA-GN-A4U4-06 11 124413011 124413011 G A OR8B12 Silent p.I180I 0.43 TCGA-GN-A4U4-06 11 130275729 130275729 G A ADAMTS8 Silent p.F798F 0.34 TCGA-GN-A4U4-06 11 14282274 14282274 G A RP11-21L19.1 3'Flank 0.29 TCGA-GN-A4U4-06 11 16071289 16071290 - TA SOX6 Intron 0.32 TCGA-GN-A4U4-06 11 17793721 17793721 C T KCNC1 Silent p.A360A 0.44 TCGA-GN-A4U4-06 11 4471058 4471058 C T OR52K2 Silent p.F163F 0.41 TCGA-GN-A4U4-06 11 45671132 45671132 G A CHST1 3'UTR 0.27 TCGA-GN-A4U4-06 11 46396983 46396983 C T DGKZ Missense_Mutation p.A759V 0.53 tolerated(0.11) probably_damaging(0.951) TCGA-GN-A4U4-06 11 46727245 46727245 G A ZNF408 Silent p.E665E 0.37 TCGA-GN-A4U4-06 11 46727246 46727246 G A ZNF408 Missense_Mutation p.E666K 0.36 tolerated(0.53) benign(0.016) TCGA-GN-A4U4-06 11 47431682 47431682 G A SLC39A13 Missense_Mutation p.G13S 0.38 deleterious_low_confidence(0.01) benign(0.253) TCGA-GN-A4U4-06 11 47431683 47431683 G A SLC39A13 Missense_Mutation p.G13D 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-GN-A4U4-06 11 47431928 47431928 A C SLC39A13 Missense_Mutation p.T95P 0.31 tolerated(0.25) benign(0.005) TCGA-GN-A4U4-06 11 48286185 48286185 G A OR4X1 Missense_Mutation p.R258K 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 11 4929509 4929509 G A OR51A7 Missense_Mutation p.G304R 0.35 tolerated(0.32) benign(0.013) TCGA-GN-A4U4-06 11 4976683 4976683 G A OR51A2 Silent p.F87F 0.73 TCGA-GN-A4U4-06 11 5221391 5221391 G A OR51V1 Silent p.F180F 0.38 TCGA-GN-A4U4-06 11 5291205 5291205 C T HBE1 5'UTR 0.55 TCGA-GN-A4U4-06 11 5345472 5345472 T C OR51B2 Missense_Mutation p.E19G 0.37 deleterious(0) probably_damaging(0.928) TCGA-GN-A4U4-06 11 5529119 5529119 C T UBQLN3 Missense_Mutation p.G557E 0.39 tolerated(0.08) possibly_damaging(0.894) TCGA-GN-A4U4-06 11 55321881 55321881 C T OR4C15 Silent p.F33F 0.33 TCGA-GN-A4U4-06 11 55681259 55681259 G A OR5W2 Missense_Mutation p.S267F 0.39 deleterious(0.01) possibly_damaging(0.503) TCGA-GN-A4U4-06 11 55861061 55861061 C T OR8I2 Missense_Mutation p.S93F 0.38 deleterious(0.01) benign(0.008) TCGA-GN-A4U4-06 11 56258595 56258595 G A OR5M8 Silent p.F84F 0.24 TCGA-GN-A4U4-06 11 5862259 5862259 G A OR52E6 Missense_Mutation p.P290L 0.30 deleterious(0.01) possibly_damaging(0.894) TCGA-GN-A4U4-06 11 58723453 58723453 G A GLYATL1 Missense_Mutation p.E319K 0.40 tolerated(0.25) benign(0.076) TCGA-GN-A4U4-06 11 6007949 6007949 G A OR52L1 Missense_Mutation p.P71L 0.40 tolerated(0.06) benign(0.046) TCGA-GN-A4U4-06 11 6129065 6129065 C T OR56B4 Silent p.I19I 0.41 TCGA-GN-A4U4-06 11 62490138 62490138 C T HNRNPUL2 Missense_Mutation p.E344K 0.38 tolerated(0.12) benign(0.096) TCGA-GN-A4U4-06 11 62760805 62760805 G A SLC22A8 Silent p.S511S 0.34 TCGA-GN-A4U4-06 11 63885561 63885561 G A FLRT1 Missense_Mutation p.D608N 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 11 64037604 64037604 G A BAD 3'UTR 0.31 TCGA-GN-A4U4-06 11 64977815 64977815 C T CAPN1 Missense_Mutation p.L651F 0.48 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 11 65124381 65124381 G A TIGD3 Missense_Mutation p.G368S 0.32 tolerated(0.18) benign(0.024) TCGA-GN-A4U4-06 11 65164292 65164292 C T FRMD8 Missense_Mutation p.P202S 0.23 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U4-06 11 65547165 65547165 G A AP5B1 Silent p.L267L 0.41 TCGA-GN-A4U4-06 11 66204361 66204361 G A MRPL11 Intron 0.37 TCGA-GN-A4U4-06 11 67047099 67047099 C T ADRBK1 Silent p.P123P 0.24 TCGA-GN-A4U4-06 11 67166016 67166016 G A PPP1CA Missense_Mutation p.A339V 0.31 tolerated_low_confidence(0.06) benign(0.028) TCGA-GN-A4U4-06 11 67269850 67269850 C T PITPNM1 Missense_Mutation p.E110K 0.37 deleterious(0) probably_damaging(0.984) TCGA-GN-A4U4-06 11 67804061 67804061 C G NDUFS8 3'UTR 0.48 TCGA-GN-A4U4-06 11 6867415 6867415 C T OR10A5 Missense_Mutation p.P168S 0.35 deleterious(0.05) possibly_damaging(0.764) TCGA-GN-A4U4-06 11 77301058 77301058 C T AQP11 Silent p.L7L 0.34 TCGA-GN-A4U4-06 11 7960713 7960713 C T OR10A3 Missense_Mutation p.A119T 0.42 deleterious(0) probably_damaging(0.94) TCGA-GN-A4U4-06 11 7982613 7982613 G A NLRP10 Silent p.L182L 0.35 TCGA-GN-A4U4-06 11 82868460 82868460 C T PCF11 5'UTR 0.39 TCGA-GN-A4U4-06 11 88780634 88780634 G A GRM5 Missense_Mutation p.S136F 0.72 deleterious(0.05) benign(0.206) TCGA-GN-A4U4-06 11 92533433 92533433 C T FAT3 Silent p.A2418A 0.33 TCGA-GN-A4U4-06 11 9450440 9450440 C T IPO7 Intron 0.39 TCGA-GN-A4U4-06 11 94862016 94862016 C T ENDOD1 Missense_Mutation p.P259L 0.42 tolerated(0.73) possibly_damaging(0.585) TCGA-GN-A4U4-06 12 100717409 100717409 C T SCYL2 Missense_Mutation p.S501F 0.43 tolerated(0.7) benign(0.005) TCGA-GN-A4U4-06 12 100717410 100717410 C T SCYL2 Silent p.S501S 0.45 TCGA-GN-A4U4-06 12 100928738 100928738 C T NR1H4 Silent p.T233T 0.34 TCGA-GN-A4U4-06 12 101381423 101381423 C T ANO4 Missense_Mutation p.P202S 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 12 101510522 101510522 C T ANO4 Missense_Mutation p.S804F 0.40 deleterious(0) probably_damaging(0.983) TCGA-GN-A4U4-06 12 101576625 101576625 C T SLC5A8 Missense_Mutation p.R374K 0.36 tolerated(0.57) benign(0.002) TCGA-GN-A4U4-06 12 101706018 101706018 C T UTP20 Missense_Mutation p.S839F 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 12 107208471 107208471 C T RIC8B Intron 0.35 TCGA-GN-A4U4-06 12 108589521 108589521 C T WSCD2 5'UTR 0.28 TCGA-GN-A4U4-06 12 110290237 110290237 G A GLTP 3'UTR 0.39 TCGA-GN-A4U4-06 12 112694273 112694273 G T HECTD4 Missense_Mutation p.P914T 0.41 benign(0.022) TCGA-GN-A4U4-06 12 117014228 117014228 C T MAP1LC3B2 3'UTR 0.32 TCGA-GN-A4U4-06 12 117768301 117768301 T C NOS1 Missense_Mutation p.T192A 0.39 tolerated_low_confidence(1) benign(0) TCGA-GN-A4U4-06 12 124350590 124350590 G A DNAH10 Nonsense_Mutation p.W2261* 0.32 TCGA-GN-A4U4-06 12 133779970 133779970 T C ZNF268 Silent p.S566S 0.56 TCGA-GN-A4U4-06 12 14959082 14959082 G A SMCO3 Missense_Mutation p.A178V 0.40 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U4-06 12 15261927 15261927 G A RERG 3'UTR 0.29 TCGA-GN-A4U4-06 12 21028360 21028360 C T SLCO1B3 Nonsense_Mutation p.Q307* 0.39 TCGA-GN-A4U4-06 12 21032525 21032525 G A SLCO1B3 Missense_Mutation p.E431K 0.40 deleterious(0.02) probably_damaging(0.937) TCGA-GN-A4U4-06 12 21033871 21033871 C T SLCO1B3 Missense_Mutation p.P472S 0.34 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 12 21971126 21971126 C T ABCC9 Silent p.S1243S 0.30 TCGA-GN-A4U4-06 12 25297593 25297593 G T CASC1 Missense_Mutation p.F236L 0.30 deleterious(0) possibly_damaging(0.879) TCGA-GN-A4U4-06 12 27554551 27554551 C T ARNTL2 Silent p.F454F 0.46 TCGA-GN-A4U4-06 12 2994575 2994575 C T RHNO1 Missense_Mutation p.P15S 0.34 deleterious(0.01) benign(0.108) TCGA-GN-A4U4-06 12 31540608 31540608 G A DENND5B Nonsense_Mutation p.R1252* 0.37 TCGA-GN-A4U4-06 12 33560247 33560247 G A SYT10 Missense_Mutation p.S185F 0.36 deleterious(0) possibly_damaging(0.732) TCGA-GN-A4U4-06 12 33560282 33560282 G A SYT10 Silent p.S173S 0.34 TCGA-GN-A4U4-06 12 39967563 39967563 C T ABCD2 Missense_Mutation p.G653E 0.34 tolerated(0.14) benign(0) TCGA-GN-A4U4-06 12 41352930 41352930 G A CNTN1 Silent p.G566G 0.38 TCGA-GN-A4U4-06 12 41352931 41352931 G A CNTN1 Missense_Mutation p.E567K 0.39 deleterious(0.04) benign(0.159) TCGA-GN-A4U4-06 12 46211644 46211644 C T ARID2 Missense_Mutation p.L204F 0.40 deleterious(0) possibly_damaging(0.814) TCGA-GN-A4U4-06 12 48961786 48961786 G A LALBA Missense_Mutation p.A128V 0.41 tolerated(0.23) benign(0.017) TCGA-GN-A4U4-06 12 49390574 49390574 G A DDN Silent p.F695F 0.41 TCGA-GN-A4U4-06 12 50041130 50041130 C T FMNL3 Missense_Mutation p.A934T 0.37 tolerated(0.41) benign(0.019) TCGA-GN-A4U4-06 12 5021406 5021406 C T KCNA1 Silent p.L288L 0.35 TCGA-GN-A4U4-06 12 52200426 52200426 C T SCN8A Missense_Mutation p.P1719L 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 12 53162375 53162375 C T KRT76 3'UTR 0.35 TCGA-GN-A4U4-06 12 53162376 53162376 C T KRT76 3'UTR 0.36 TCGA-GN-A4U4-06 12 54686274 54686274 G A NFE2 Missense_Mutation p.H336Y 0.35 tolerated(0.25) benign(0.412) TCGA-GN-A4U4-06 12 54765286 54765286 G A ZNF385A Missense_Mutation p.S212F 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 12 54912996 54912996 C A NCKAP1L Missense_Mutation p.P502H 0.36 tolerated(0.1) probably_damaging(0.928) TCGA-GN-A4U4-06 12 55794837 55794837 C T OR6C65 Silent p.F175F 0.39 TCGA-GN-A4U4-06 12 57548144 57548144 C T LRP1 Missense_Mutation p.P332L 0.27 probably_damaging(0.94) TCGA-GN-A4U4-06 12 58087930 58087930 G A OS9 5'UTR 0.33 TCGA-GN-A4U4-06 12 5860039 5860039 G A ANO2 Missense_Mutation p.L381F 0.43 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A4U4-06 12 6174305 6174305 G A VWF Nonsense_Mutation p.Q431* 0.38 TCGA-GN-A4U4-06 12 64679780 64679780 C T C12orf56 Missense_Mutation p.D232N 0.37 tolerated(0.28) benign(0.138) TCGA-GN-A4U4-06 12 6700892 6700892 C T CHD4 Missense_Mutation p.E1064K 0.46 deleterious(0.02) benign(0.036) TCGA-GN-A4U4-06 12 6747279 6747279 G A ACRBP 3'UTR 0.33 TCGA-GN-A4U4-06 12 6958951 6958951 G A CDCA3 Missense_Mutation p.P108S 0.37 tolerated(0.49) benign(0.04) TCGA-GN-A4U4-06 12 70732278 70732278 G A CNOT2 Missense_Mutation p.G319E 0.35 tolerated(0.05) probably_damaging(0.96) TCGA-GN-A4U4-06 12 7188198 7188198 C T C1R Missense_Mutation p.D534N 0.39 tolerated(0.3) benign(0.093) TCGA-GN-A4U4-06 12 7252557 7252557 C T C1RL Missense_Mutation p.D186N 0.43 tolerated(0.62) benign(0.018) TCGA-GN-A4U4-06 12 73012685 73012685 C T TRHDE Missense_Mutation p.P734L 0.29 deleterious(0.03) benign(0.334) TCGA-GN-A4U4-06 12 73012771 73012771 C T TRHDE Missense_Mutation p.P763S 0.45 tolerated(0.08) benign(0.051) TCGA-GN-A4U4-06 12 77417947 77417947 G A E2F7 Missense_Mutation p.P862S 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 12 8192441 8192441 C T FOXJ2 Silent p.L5L 0.36 TCGA-GN-A4U4-06 12 8666270 8666270 G A CLEC4D 5'UTR 0.35 TCGA-GN-A4U4-06 12 88380192 88380192 C T C12orf50 Missense_Mutation p.M273I 0.41 tolerated(0.17) benign(0.005) TCGA-GN-A4U4-06 12 88478526 88478526 T A CEP290 Missense_Mutation p.E1514V 0.43 possibly_damaging(0.628) TCGA-GN-A4U4-06 12 91449860 91449860 G A KERA Missense_Mutation p.P67S 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 12 94692559 94692559 G A PLXNC1 Nonsense_Mutation p.W1409* 0.30 TCGA-GN-A4U4-06 12 95604014 95604014 G A FGD6 Missense_Mutation p.S349F 0.36 tolerated_low_confidence(0.62) benign(0.009) TCGA-GN-A4U4-06 12 97331067 97331067 C T NEDD1 Missense_Mutation p.S345F 0.39 deleterious(0.02) possibly_damaging(0.622) TCGA-GN-A4U4-06 13 110853802 110853802 C T COL4A1 Missense_Mutation p.G356E 0.33 unknown(0) TCGA-GN-A4U4-06 13 113479850 113479850 C T ATP11A Missense_Mutation p.P327S 0.36 tolerated(0.07) benign(0.304) TCGA-GN-A4U4-06 13 113536329 113536329 C T ATP11A 3'UTR 0.37 TCGA-GN-A4U4-06 13 113770101 113770101 C T F7 Silent p.S186S 0.44 TCGA-GN-A4U4-06 13 28592617 28592617 A G FLT3 Missense_Mutation p.V843A 0.38 deleterious(0) probably_damaging(0.98) TCGA-GN-A4U4-06 13 37011886 37011886 G A CCNA1 Missense_Mutation p.D140N 0.32 deleterious(0) possibly_damaging(0.632) TCGA-GN-A4U4-06 13 42752276 42752276 G A DGKH Silent p.T486T 0.40 TCGA-GN-A4U4-06 13 43934182 43934182 G A ENOX1 Missense_Mutation p.P132S 0.30 deleterious(0.02) possibly_damaging(0.783) TCGA-GN-A4U4-06 13 52035444 52035444 G A RPS4XP16 RNA 0.31 TCGA-GN-A4U4-06 13 52639699 52639699 C T NEK5 Nonsense_Mutation p.W657* 0.34 TCGA-GN-A4U4-06 13 53277900 53277900 C T LECT1 Missense_Mutation p.E279K 0.35 tolerated(0.49) benign(0.38) TCGA-GN-A4U4-06 13 60557996 60557996 C T DIAPH3 Missense_Mutation p.E463K 0.40 deleterious(0) probably_damaging(0.988) TCGA-GN-A4U4-06 13 66878730 66878730 G A PCDH9 3'UTR 0.29 TCGA-GN-A4U4-06 13 77672723 77672723 C T MYCBP2 Missense_Mutation p.A2818T 0.37 benign(0.021) TCGA-GN-A4U4-06 13 78176801 78176801 C T SCEL Silent p.L330L 0.35 TCGA-GN-A4U4-06 13 86369098 86369098 C T SLITRK6 Missense_Mutation p.D516N 0.44 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U4-06 13 96205200 96205200 G A CLDN10 Missense_Mutation p.D65N 0.31 tolerated(0.06) benign(0.101) TCGA-GN-A4U4-06 14 100531816 100531816 C T EVL 5'UTR 0.43 TCGA-GN-A4U4-06 14 101418202 101418202 G A SNORD114-2 RNA 0.34 TCGA-GN-A4U4-06 14 101493486 101493486 G A MIR329-2 RNA 0.39 TCGA-GN-A4U4-06 14 105609870 105609870 C T JAG2 Missense_Mutation p.A1064T 0.33 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U4-06 14 106406033 106406033 G A IGHV6-1 Silent p.F8F 0.33 TCGA-GN-A4U4-06 14 20389635 20389635 G A OR4K5 Silent p.R290R 0.33 TCGA-GN-A4U4-06 14 20528638 20528638 G A OR4L1 Silent p.A145A 0.39 TCGA-GN-A4U4-06 14 21501896 21501896 G A RP11-998D10.1 Intron 0.42 TCGA-GN-A4U4-06 14 21624050 21624050 G A OR5AU1 Silent p.I45I 0.40 TCGA-GN-A4U4-06 14 22192420 22192420 C T TRAV3 Silent p.F65F 0.42 TCGA-GN-A4U4-06 14 22356055 22356055 G A TRAV12-2 5'UTR 0.46 TCGA-GN-A4U4-06 14 39645780 39645780 C T PNN Missense_Mutation p.L79F 0.24 tolerated(0.37) possibly_damaging(0.465) TCGA-GN-A4U4-06 14 52496389 52496389 C T NID2 Silent p.P759P 0.38 TCGA-GN-A4U4-06 14 53539339 53539339 A G DDHD1 Silent p.Y493Y 0.34 TCGA-GN-A4U4-06 14 54417526 54417526 C T BMP4 Missense_Mutation p.E151K 0.45 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 14 60938167 60938167 G A C14orf39 Silent p.P174P 0.30 TCGA-GN-A4U4-06 14 60938168 60938168 G A C14orf39 Missense_Mutation p.P174L 0.30 tolerated(0.05) probably_damaging(0.958) TCGA-GN-A4U4-06 14 62550966 62550966 C T SYT16 Missense_Mutation p.S496L 0.39 tolerated(0.09) benign(0.099) TCGA-GN-A4U4-06 14 64488199 64488199 C T SYNE2 Missense_Mutation p.P1773L 0.32 probably_damaging(0.999) TCGA-GN-A4U4-06 14 64681116 64681116 C T SYNE2 Missense_Mutation p.H6421Y 0.41 probably_damaging(0.999) TCGA-GN-A4U4-06 14 69925297 69925297 G A SLC39A9 Missense_Mutation p.G304E 0.48 deleterious(0) possibly_damaging(0.799) TCGA-GN-A4U4-06 14 75200844 75200844 A G FCF1 Silent p.G173G 0.24 TCGA-GN-A4U4-06 14 75359558 75359558 C T DLST Missense_Mutation p.P155L 0.38 deleterious(0.02) benign(0.091) TCGA-GN-A4U4-06 14 76429781 76429781 C T TGFB3 Silent p.K268K 0.36 TCGA-GN-A4U4-06 14 88892794 88892794 C T SPATA7 Silent p.A197A 0.44 TCGA-GN-A4U4-06 14 92088079 92088079 C T CATSPERB Nonsense_Mutation p.W711* 0.34 TCGA-GN-A4U4-06 14 95560406 95560406 G A DICER1 Missense_Mutation p.S1728F 0.33 deleterious(0) probably_damaging(0.976) TCGA-GN-A4U4-06 14 95570079 95570079 G A DICER1 Silent p.S1218S 0.35 TCGA-GN-A4U4-06 14 96706576 96706576 G A BDKRB2 Intron 0.35 TCGA-GN-A4U4-06 14 99866533 99866533 G A SETD3 Missense_Mutation p.S414L 0.42 tolerated(0.7) benign(0.007) TCGA-GN-A4U4-06 15 20636482 20636482 C T HERC2P3 RNA 0.37 TCGA-GN-A4U4-06 15 25339112 25339112 C T SNORD116-25 5'Flank 0.41 TCGA-GN-A4U4-06 15 25427549 25427549 A T SNORD115-6 3'Flank 0.36 TCGA-GN-A4U4-06 15 29346357 29346357 C T APBA2 Silent p.L90L 0.40 TCGA-GN-A4U4-06 15 31354891 31354891 G A TRPM1 Missense_Mutation p.S344F 0.33 deleterious(0) possibly_damaging(0.862) TCGA-GN-A4U4-06 15 43527965 43527965 G A TGM5 Silent p.S472S 0.34 TCGA-GN-A4U4-06 15 43820995 43820995 C T MAP1A Missense_Mutation p.R2442W 0.35 benign(0.035) TCGA-GN-A4U4-06 15 43893730 43893730 C T STRC Missense_Mutation p.G1522E 0.28 tolerated(1) possibly_damaging(0.561) TCGA-GN-A4U4-06 15 43893731 43893731 C T STRC Missense_Mutation p.G1522R 0.28 tolerated(0.51) benign(0.028) TCGA-GN-A4U4-06 15 44150935 44150935 T C WDR76 Silent p.T492T 0.35 TCGA-GN-A4U4-06 15 44921440 44921440 G A SPG11 Missense_Mutation p.H628Y 0.32 tolerated(0.22) possibly_damaging(0.888) TCGA-GN-A4U4-06 15 52015709 52015709 G A LYSMD2 3'UTR 0.35 TCGA-GN-A4U4-06 15 54306679 54306679 C T UNC13C Missense_Mutation p.H527Y 0.46 tolerated_low_confidence(1) benign(0) TCGA-GN-A4U4-06 15 65917338 65917338 C T SLC24A1 Missense_Mutation p.P307L 0.34 possibly_damaging(0.908) TCGA-GN-A4U4-06 15 73585784 73585784 C T NEO1 Missense_Mutation p.H1266Y 0.32 tolerated(0.51) probably_damaging(0.952) TCGA-GN-A4U4-06 15 73590889 73590889 C T NEO1 Missense_Mutation p.P1368S 0.47 deleterious(0.01) possibly_damaging(0.877) TCGA-GN-A4U4-06 15 74473149 74473149 C T STRA6 Missense_Mutation p.S644N 0.34 tolerated(0.25) benign(0.01) TCGA-GN-A4U4-06 15 79324609 79324609 G A RASGRF1 Silent p.F336F 0.41 TCGA-GN-A4U4-06 15 79350694 79350694 G A RASGRF1 Silent p.I171I 0.43 TCGA-GN-A4U4-06 15 85438723 85438723 G A SLC28A1 Intron 0.28 TCGA-GN-A4U4-06 15 89398778 89398778 G A ACAN Missense_Mutation p.G988R 0.34 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U4-06 15 90892006 90892006 C T GABARAPL3 3'UTR 0.45 TCGA-GN-A4U4-06 15 90892007 90892007 C T GABARAPL3 3'UTR 0.45 TCGA-GN-A4U4-06 16 1308340 1308340 C T TPSD1 Missense_Mutation p.S231F 0.40 deleterious(0.01) possibly_damaging(0.778) TCGA-GN-A4U4-06 16 14014011 14014011 G A ERCC4 5'Flank 0.36 TCGA-GN-A4U4-06 16 14014012 14014012 G A ERCC4 5'Flank 0.38 TCGA-GN-A4U4-06 16 15853535 15853535 G A MYH11 Silent p.F440F 0.37 TCGA-GN-A4U4-06 16 19474632 19474632 G A TMC5 Silent p.Q393Q 0.53 TCGA-GN-A4U4-06 16 20566695 20566695 G A ACSM2B Silent p.I164I 0.41 TCGA-GN-A4U4-06 16 24373118 24373118 C T CACNG3 Silent p.S294S 0.39 TCGA-GN-A4U4-06 16 28188547 28188547 A G XPO6 Silent p.V67V 0.56 TCGA-GN-A4U4-06 16 28617510 28617510 G A SULT1A1 Silent p.S214S 0.23 TCGA-GN-A4U4-06 16 29884603 29884603 C T SEZ6L2 Missense_Mutation p.G816S 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-GN-A4U4-06 16 29918198 29918198 C T KCTD13 Missense_Mutation p.D329N 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A4U4-06 16 30593852 30593852 G T ZNF785 3'UTR 0.42 TCGA-GN-A4U4-06 16 30774758 30774758 C T RNF40 Missense_Mutation p.A107V 0.39 tolerated(1) benign(0) TCGA-GN-A4U4-06 16 31288249 31288249 C T ITGAM Silent p.P364P 0.38 TCGA-GN-A4U4-06 16 3140453 3140453 C T ZSCAN10 Missense_Mutation p.E273K 0.37 tolerated(0.13) benign(0.204) TCGA-GN-A4U4-06 16 4925382 4925382 C T UBN1 Missense_Mutation p.P991S 0.35 tolerated_low_confidence(0.51) unknown(0) TCGA-GN-A4U4-06 16 49764870 49764870 C T ZNF423 Missense_Mutation p.G30E 0.38 tolerated_low_confidence(0.95) benign(0.002) TCGA-GN-A4U4-06 16 50763780 50763780 C T NOD2 Silent p.A1006A 0.34 TCGA-GN-A4U4-06 16 50763781 50763781 C T NOD2 Missense_Mutation p.L1007F 0.34 deleterious(0.02) probably_damaging(1) TCGA-GN-A4U4-06 16 51173027 51173027 G A SALL1 Missense_Mutation p.R1036C 0.36 deleterious(0.02) benign(0.178) TCGA-GN-A4U4-06 16 617895 617895 C T NHLRC4 5'UTR 0.62 TCGA-GN-A4U4-06 16 66955974 66955974 G A RRAD 3'UTR 0.33 TCGA-GN-A4U4-06 16 737047 737047 G A WDR24 Silent p.L343L 0.42 TCGA-GN-A4U4-06 16 74425426 74425426 C T NPIPB15 Silent p.S260S 0.07 TCGA-GN-A4U4-06 16 75682397 75682397 C T TERF2IP Missense_Mutation p.S206F 0.33 deleterious(0) possibly_damaging(0.778) TCGA-GN-A4U4-06 16 81051405 81051405 C T CENPN Missense_Mutation p.S107L 0.40 tolerated(0.06) benign(0.077) TCGA-GN-A4U4-06 16 82185039 82185039 G A MPHOSPH6 Missense_Mutation p.P82L 0.35 deleterious(0.04) benign(0.376) TCGA-GN-A4U4-06 16 87454249 87454249 A C ZCCHC14 Missense_Mutation p.V168G 0.32 tolerated(0.3) benign(0.006) TCGA-GN-A4U4-06 16 88909220 88909220 G A GALNS Silent p.L46L 0.46 TCGA-GN-A4U4-06 17 10299732 10299732 C T MYH8 Missense_Mutation p.G1523E 0.34 deleterious(0.01) benign(0.119) TCGA-GN-A4U4-06 17 10348323 10348323 C T MYH4 Silent p.G1812G 0.37 TCGA-GN-A4U4-06 17 10426900 10426900 G A MYH2 Silent p.T1795T 0.38 TCGA-GN-A4U4-06 17 10450912 10450912 C T MYH2 Silent p.Q76Q 0.32 TCGA-GN-A4U4-06 17 10532971 10532971 G A MYH3 Silent p.I1913I 0.41 TCGA-GN-A4U4-06 17 11648317 11648317 G A DNAH9 Silent p.R2105R 0.30 TCGA-GN-A4U4-06 17 16040674 16040693 TAATTCTCATTTTTCTTGGT - NCOR1 Frame_Shift_Del p.T481* 0.26 TCGA-GN-A4U4-06 17 17179427 17179429 GCA AC COPS3 Frame_Shift_Del p.A36* 0.26 TCGA-GN-A4U4-06 17 17697254 17697254 C T RAI1 Missense_Mutation p.P331L 0.36 deleterious(0) probably_damaging(0.98) TCGA-GN-A4U4-06 17 17900816 17900816 G A LRRC48 Silent p.E289E 0.41 TCGA-GN-A4U4-06 17 19861716 19861716 G A AKAP10 Missense_Mutation p.S163L 0.43 deleterious(0) benign(0.219) TCGA-GN-A4U4-06 17 28545831 28545831 G A SLC6A4 Silent p.I154I 0.39 TCGA-GN-A4U4-06 17 33497236 33497236 G A UNC45B Missense_Mutation p.D551N 0.39 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U4-06 17 36499159 36499159 C T GPR179 Missense_Mutation p.E172K 0.36 deleterious(0) probably_damaging(0.93) TCGA-GN-A4U4-06 17 37010042 37010042 C T RPL23 5'UTR 0.33 TCGA-GN-A4U4-06 17 38556912 38556912 G A TOP2A Missense_Mutation p.P890S 0.33 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U4-06 17 39261979 39261979 C T KRTAP4-9 Silent p.T113T 0.31 TCGA-GN-A4U4-06 17 40940389 40940389 C T WNK4 Silent p.L668L 0.28 TCGA-GN-A4U4-06 17 41001229 41001230 - T AOC2 Frame_Shift_Ins p.S574Ffs*14 0.30 TCGA-GN-A4U4-06 17 41926251 41926251 C T CD300LG Silent p.F123F 0.36 TCGA-GN-A4U4-06 17 42287823 42287823 C T UBTF Missense_Mutation p.E460K 0.37 deleterious(0.02) possibly_damaging(0.876) TCGA-GN-A4U4-06 17 46620947 46620947 C A HOXB2 Missense_Mutation p.R185M 0.45 deleterious(0) probably_damaging(0.971) TCGA-GN-A4U4-06 17 48212655 48212655 G A PPP1R9B 3'UTR 0.45 TCGA-GN-A4U4-06 17 48222508 48222508 A G PPP1R9B Silent p.L490L 0.39 TCGA-GN-A4U4-06 17 48598577 48598577 C T MYCBPAP Silent p.F384F 0.30 TCGA-GN-A4U4-06 17 51901687 51901687 C T KIF2B Silent p.I431I 0.32 TCGA-GN-A4U4-06 17 54431397 54431397 A G ANKFN1 Silent p.E200E 0.21 TCGA-GN-A4U4-06 17 54543926 54543926 C T ANKFN1 Silent p.T592T 0.38 TCGA-GN-A4U4-06 17 56232512 56232512 C T OR4D1 5'UTR 0.39 TCGA-GN-A4U4-06 17 56294094 56294094 C T MKS1 Missense_Mutation p.G65E 0.24 deleterious(0.04) benign(0.03) TCGA-GN-A4U4-06 17 58366007 58366007 G A USP32 Missense_Mutation p.L150F 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-GN-A4U4-06 17 58740832 58740832 C T PPM1D Silent p.T579T 0.38 TCGA-GN-A4U4-06 17 60744889 60744889 C T MRC2 Missense_Mutation p.P371L 0.37 tolerated(0.31) benign(0.002) TCGA-GN-A4U4-06 17 60802380 60802380 C T MARCH10 Missense_Mutation p.E675K 0.35 deleterious(0.02) benign(0.14) TCGA-GN-A4U4-06 17 65103431 65103431 G A HELZ Missense_Mutation p.P1699S 0.31 tolerated_low_confidence(0.2) unknown(0) TCGA-GN-A4U4-06 17 7111499 7111499 G A DLG4 Silent p.P73P 0.43 TCGA-GN-A4U4-06 17 71354312 71354312 G A SDK2 Silent p.I1833I 0.44 TCGA-GN-A4U4-06 17 72350659 72350659 G A KIF19 Silent p.R889R 0.20 TCGA-GN-A4U4-06 17 7239909 7239909 A G ACAP1 5'UTR 0.29 TCGA-GN-A4U4-06 17 72843566 72843566 T C GRIN2C Missense_Mutation p.M628V 0.41 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U4-06 17 7329715 7329715 C T C17orf74 Silent p.R135R 0.35 TCGA-GN-A4U4-06 17 73560510 73560510 G A LLGL2 Missense_Mutation p.D320N 0.37 tolerated(0.21) benign(0.002) TCGA-GN-A4U4-06 17 73747167 73747167 C T ITGB4 Silent p.C1256C 0.40 TCGA-GN-A4U4-06 17 73753680 73753680 C T ITGB4 3'UTR 0.42 TCGA-GN-A4U4-06 17 73754069 73754069 C T GALK1 3'UTR 0.35 TCGA-GN-A4U4-06 17 73754070 73754070 C T GALK1 3'UTR 0.33 TCGA-GN-A4U4-06 17 73836020 73836020 C T UNC13D Missense_Mutation p.G319R 0.41 deleterious(0.01) probably_damaging(0.944) TCGA-GN-A4U4-06 17 77082115 77082115 C T ENGASE Missense_Mutation p.P639L 0.36 tolerated(0.23) benign(0.001) TCGA-GN-A4U4-06 17 77758698 77758698 T G CBX2 Missense_Mutation p.S486A 0.37 tolerated(0.36) benign(0.015) TCGA-GN-A4U4-06 17 79094479 79094479 G A AATK Missense_Mutation p.P1086L 0.46 tolerated(0.08) benign(0.004) TCGA-GN-A4U4-06 17 79094480 79094480 G A AATK Missense_Mutation p.P1086S 0.46 tolerated(0.23) benign(0.004) TCGA-GN-A4U4-06 17 7911259 7911259 G A GUCY2D Missense_Mutation p.G526E 0.19 tolerated(0.43) possibly_damaging(0.874) TCGA-GN-A4U4-06 17 7911260 7911260 G A GUCY2D Silent p.G526G 0.18 TCGA-GN-A4U4-06 17 79682555 79682555 C T SLC25A10 Silent p.D87D 0.36 TCGA-GN-A4U4-06 17 80151677 80151677 G A CCDC57 Missense_Mutation p.S269F 0.21 tolerated(0.18) benign(0.042) TCGA-GN-A4U4-06 17 8018372 8018372 C T ALOXE3 Nonsense_Mutation p.W278* 0.33 TCGA-GN-A4U4-06 18 19110119 19110119 C T ESCO1 3'UTR 0.50 TCGA-GN-A4U4-06 18 19429316 19429316 C T MIB1 Silent p.L851L 0.39 TCGA-GN-A4U4-06 18 2784559 2784559 C T SMCHD1 Missense_Mutation p.R1887W 0.31 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 18 28723643 28723643 G A DSC1 Missense_Mutation p.P351S 0.35 tolerated(0.2) benign(0.001) TCGA-GN-A4U4-06 18 28728530 28728530 C T DSC1 Missense_Mutation p.D235N 0.36 deleterious(0) possibly_damaging(0.798) TCGA-GN-A4U4-06 18 28737419 28737419 C T DSC1 Missense_Mutation p.R89K 0.38 tolerated(1) benign(0.003) TCGA-GN-A4U4-06 18 28992812 28992812 G A DSG4 Missense_Mutation p.E812K 0.41 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 18 29056048 29056048 C T DSG3 Missense_Mutation p.S942F 0.41 deleterious(0) probably_damaging(0.94) TCGA-GN-A4U4-06 18 42281764 42281764 G A SETBP1 Silent p.T151T 0.40 TCGA-GN-A4U4-06 18 45567266 45567266 C T ZBTB7C Silent p.Q71Q 0.52 TCGA-GN-A4U4-06 18 47809679 47809679 T C CXXC1 Missense_Mutation p.K547E 0.33 deleterious(0) probably_damaging(0.981) TCGA-GN-A4U4-06 18 50832089 50832089 G A DCC Missense_Mutation p.G685R 0.37 deleterious(0) probably_damaging(0.972) TCGA-GN-A4U4-06 18 61322794 61322794 G A SERPINB3 3'UTR 0.49 TCGA-GN-A4U4-06 18 61328476 61328476 C T SERPINB3 Intron 0.37 TCGA-GN-A4U4-06 18 61471587 61471587 G A SERPINB7 Missense_Mutation p.M287I 0.30 tolerated(0.2) benign(0.002) TCGA-GN-A4U4-06 18 61627535 61627535 C T HMSD Silent p.F122F 0.19 TCGA-GN-A4U4-06 18 76753166 76753166 C T SALL3 Missense_Mutation p.A392V 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A4U4-06 19 10403393 10403393 G A ICAM5 Missense_Mutation p.G356E 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A4U4-06 19 10449779 10449779 G A ICAM3 Intron 0.33 TCGA-GN-A4U4-06 19 1095370 1095370 G A POLR2E 5'UTR 0.43 TCGA-GN-A4U4-06 19 1106690 1106690 A G GPX4 3'UTR 0.47 TCGA-GN-A4U4-06 19 11447877 11447877 G A RAB3D Missense_Mutation p.H67Y 0.36 deleterious(0) benign(0.172) TCGA-GN-A4U4-06 19 12187235 12187235 C T ZNF844 Missense_Mutation p.P434S 0.37 tolerated(1) benign(0.011) TCGA-GN-A4U4-06 19 12430406 12430406 G A ZNF563 Nonsense_Mutation p.Q145* 0.41 TCGA-GN-A4U4-06 19 14748929 14748929 C T EMR3 Missense_Mutation p.G491E 0.50 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U4-06 19 15163017 15163017 G A CASP14 Intron 0.27 TCGA-GN-A4U4-06 19 16003236 16003236 G A CYP4F2 Silent p.L136L 0.40 TCGA-GN-A4U4-06 19 16791328 16791328 C T TMEM38A Silent p.I134I 0.40 TCGA-GN-A4U4-06 19 17086005 17086005 G A CPAMD8 Missense_Mutation p.P705S 0.16 tolerated(0.41) benign(0.008) TCGA-GN-A4U4-06 19 17375083 17375083 C T USHBP1 Missense_Mutation p.R9Q 0.35 deleterious(0) unknown(0) TCGA-GN-A4U4-06 19 17628118 17628118 C T PGLS Missense_Mutation p.P140S 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-GN-A4U4-06 19 18218412 18218412 C T MAST3 Missense_Mutation p.P19S 0.39 tolerated(0.18) benign(0.147) TCGA-GN-A4U4-06 19 18234941 18234941 G A MAST3 Missense_Mutation p.E247K 0.33 deleterious(0.01) probably_damaging(0.911) TCGA-GN-A4U4-06 19 19454710 19454710 C T MAU2 Silent p.C346C 0.36 TCGA-GN-A4U4-06 19 19645861 19645861 C T YJEFN3 Missense_Mutation p.L113F 0.39 tolerated(0.15) probably_damaging(0.954) TCGA-GN-A4U4-06 19 19681608 19681608 G A PBX4 Silent p.P76P 0.30 TCGA-GN-A4U4-06 19 19990950 19990950 C T ZNF253 Missense_Mutation p.P74L 0.30 tolerated(0.09) possibly_damaging(0.656) TCGA-GN-A4U4-06 19 20228766 20228766 C T ZNF90 Nonsense_Mutation p.Q135* 0.22 TCGA-GN-A4U4-06 19 20959111 20959111 T G ZNF66 5'Flank 0.38 TCGA-GN-A4U4-06 19 21366788 21366788 C T ZNF431 Missense_Mutation p.S561L 0.31 tolerated_low_confidence(0.48) benign(0.001) TCGA-GN-A4U4-06 19 2211778 2211778 C T DOT1L Silent p.F498F 0.44 TCGA-GN-A4U4-06 19 22362238 22362238 C T ZNF676 3'UTR 0.21 TCGA-GN-A4U4-06 19 3157847 3157847 C T GNA15 Missense_Mutation p.S289F 0.39 deleterious(0.02) probably_damaging(0.972) TCGA-GN-A4U4-06 19 35449466 35449466 G A ZNF792 Silent p.F431F 0.33 TCGA-GN-A4U4-06 19 35849795 35849795 G A FFAR3 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.01) benign(0.051) TCGA-GN-A4U4-06 19 36159276 36159276 G A UPK1A Intron 0.31 TCGA-GN-A4U4-06 19 36221442 36221442 C T KMT2B Missense_Mutation p.S1734F 0.36 probably_damaging(0.99) TCGA-GN-A4U4-06 19 36243697 36243697 C T LIN37 Intron 0.32 TCGA-GN-A4U4-06 19 37975423 37975423 A G ZNF570 Missense_Mutation p.K300R 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-GN-A4U4-06 19 38160384 38160384 G A ZNF781 Silent p.F222F 0.34 TCGA-GN-A4U4-06 19 39051792 39051792 C T RYR1 Nonsense_Mutation p.Q4108* 0.37 TCGA-GN-A4U4-06 19 40132963 40132963 G A AC005176.2 RNA 0.38 TCGA-GN-A4U4-06 19 40704302 40704302 G A MAP3K10 Missense_Mutation p.E235K 0.37 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U4-06 19 40732318 40732318 T C CNTD2 Silent p.E77E 0.21 TCGA-GN-A4U4-06 19 40732319 40732319 T C CNTD2 Missense_Mutation p.E77G 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-GN-A4U4-06 19 41798299 41798299 C T HNRNPUL1 Silent p.F383F 0.36 TCGA-GN-A4U4-06 19 42509959 42509959 C T GRIK5 Missense_Mutation p.E727K 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A4U4-06 19 42848889 42848889 C T MEGF8 Silent p.F667F 0.32 TCGA-GN-A4U4-06 19 4294650 4294650 C T TMIGD2 Missense_Mutation p.G159E 0.42 deleterious(0.01) probably_damaging(0.972) TCGA-GN-A4U4-06 19 43406457 43406457 C T PSG6 3'Flank 0.35 TCGA-GN-A4U4-06 19 44223062 44223062 C T IRGC Missense_Mutation p.P118S 0.46 deleterious(0.01) benign(0.23) TCGA-GN-A4U4-06 19 44377703 44377703 C T ZNF404 Silent p.G221G 0.42 TCGA-GN-A4U4-06 19 44739223 44739223 C T ZNF227 Missense_Mutation p.H214Y 0.46 tolerated(0.74) benign(0.026) TCGA-GN-A4U4-06 19 45033496 45033496 C T CEACAM20 RNA 0.31 TCGA-GN-A4U4-06 19 45254578 45254578 G A BCL3 Missense_Mutation p.M117I 0.32 tolerated(0.44) benign(0.03) TCGA-GN-A4U4-06 19 46095087 46095087 G A GPR4 Missense_Mutation p.S13L 0.42 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U4-06 19 47207846 47207847 - CC PRKD2 Frame_Shift_Ins p.A191Gfs*33 0.27 TCGA-GN-A4U4-06 19 47845019 47845019 G A C5AR2 Silent p.V321V 0.29 TCGA-GN-A4U4-06 19 49952896 49952896 G A PIH1D1 Missense_Mutation p.T58I 0.36 deleterious(0.02) possibly_damaging(0.893) TCGA-GN-A4U4-06 19 49963067 49963067 C T ALDH16A1 Missense_Mutation p.S154F 0.32 deleterious(0.01) benign(0.093) TCGA-GN-A4U4-06 19 50250699 50250699 C T TSKS Missense_Mutation p.E204K 0.34 deleterious(0) possibly_damaging(0.716) TCGA-GN-A4U4-06 19 50473391 50473391 G A SIGLEC16 RNA 0.54 TCGA-GN-A4U4-06 19 51135724 51135724 C T SYT3 Missense_Mutation p.D165N 0.33 tolerated(0.23) probably_damaging(0.965) TCGA-GN-A4U4-06 19 51140561 51140561 G A SYT3 Silent p.F36F 0.37 TCGA-GN-A4U4-06 19 52941670 52941670 C T ZNF534 Silent p.I332I 0.28 TCGA-GN-A4U4-06 19 53856740 53856740 A C ZNF845 Missense_Mutation p.T938P 0.21 deleterious(0.02) benign(0.095) TCGA-GN-A4U4-06 19 53856741 53856741 C T ZNF845 Missense_Mutation p.T938I 0.21 deleterious(0.02) benign(0.099) TCGA-GN-A4U4-06 19 53856742 53856742 T C ZNF845 Silent p.T938T 0.22 TCGA-GN-A4U4-06 19 53993701 53993701 G A ZNF813 Missense_Mutation p.G72E 0.32 tolerated(0.17) probably_damaging(0.962) TCGA-GN-A4U4-06 19 54876398 54876398 G A LAIR1 Missense_Mutation p.P5L 0.31 tolerated(0.75) probably_damaging(0.981) TCGA-GN-A4U4-06 19 55086420 55086420 C T LILRA2 Missense_Mutation p.S192L 0.42 deleterious(0.01) benign(0.045) TCGA-GN-A4U4-06 19 55175832 55175832 C T LILRB4 Missense_Mutation p.P184L 0.39 deleterious(0.03) probably_damaging(0.984) TCGA-GN-A4U4-06 19 55285036 55285036 C T KIR2DL1 Missense_Mutation p.P108S 0.32 tolerated(0.11) probably_damaging(0.991) TCGA-GN-A4U4-06 19 55449588 55449588 C T NLRP7 Silent p.P651P 0.34 TCGA-GN-A4U4-06 19 55512270 55512270 C T NLRP2 3'UTR 0.27 TCGA-GN-A4U4-06 19 55708576 55708576 C T PTPRH Silent p.E633E 0.38 TCGA-GN-A4U4-06 19 5667168 5667168 C T SAFB Missense_Mutation p.P816S 0.36 tolerated(0.1) unknown(0) TCGA-GN-A4U4-06 19 56952656 56952656 G A ZNF667 Missense_Mutation p.L570F 0.39 tolerated(0.06) probably_damaging(1) TCGA-GN-A4U4-06 19 57327571 57327571 C T PEG3 Missense_Mutation p.E747K 0.40 tolerated(0.07) benign(0.195) TCGA-GN-A4U4-06 19 57646362 57646362 C T ZIM3 Missense_Mutation p.G448E 0.34 tolerated(1) benign(0.001) TCGA-GN-A4U4-06 19 57666650 57666650 G A DUXA Missense_Mutation p.P177S 0.39 tolerated_low_confidence(0.65) benign(0) TCGA-GN-A4U4-06 19 58189626 58189626 C T ZSCAN4 Silent p.L219L 0.46 TCGA-GN-A4U4-06 19 58967343 58967343 C T ZNF324B Silent p.S344S 0.55 TCGA-GN-A4U4-06 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.44 TCGA-GN-A4U4-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.46 deleterious(0) possibly_damaging(0.891) TCGA-GN-A4U4-06 19 6913720 6913720 C T EMR1 Silent p.F393F 0.39 TCGA-GN-A4U4-06 19 7987148 7987148 G A SNAPC2 Missense_Mutation p.D201N 0.35 tolerated(0.15) benign(0.21) TCGA-GN-A4U4-06 19 8491631 8491631 C T MARCH2 Silent p.Y105Y 0.31 TCGA-GN-A4U4-06 19 9047457 9047457 G A MUC16 Missense_Mutation p.P11392S 0.43 benign(0) TCGA-GN-A4U4-06 19 9047822 9047822 G A MUC16 Missense_Mutation p.P11270L 0.35 benign(0.003) TCGA-GN-A4U4-06 19 9049655 9049655 G A MUC16 Missense_Mutation p.S10659L 0.43 benign(0.097) TCGA-GN-A4U4-06 19 9064338 9064338 G A MUC16 Missense_Mutation p.S7703F 0.41 unknown(0) TCGA-GN-A4U4-06 19 9065685 9065685 G A MUC16 Missense_Mutation p.S7254F 0.41 unknown(0) TCGA-GN-A4U4-06 19 9071478 9071478 C T MUC16 Nonsense_Mutation p.W5323* 0.42 TCGA-GN-A4U4-06 19 9639044 9639044 G A ZNF426 3'UTR 0.26 TCGA-GN-A4U4-06 1 107866985 107866985 G A NTNG1 Missense_Mutation p.E110K 0.36 deleterious(0) possibly_damaging(0.905) TCGA-GN-A4U4-06 1 109270446 109270446 T C FNDC7 Silent p.S376S 0.40 TCGA-GN-A4U4-06 1 109643057 109643057 C T TMEM167B 3'Flank 0.27 TCGA-GN-A4U4-06 1 109643058 109643058 C T TMEM167B 3'Flank 0.27 TCGA-GN-A4U4-06 1 109849468 109849468 C T MYBPHL Splice_Site p.X49_splice 0.29 TCGA-GN-A4U4-06 1 109849469 109849469 C T MYBPHL Missense_Mutation p.E49K 0.26 deleterious(0) benign(0.022) TCGA-GN-A4U4-06 1 110198860 110198860 T C GSTM4 5'UTR 0.40 TCGA-GN-A4U4-06 1 110596512 110596512 C T STRIP1 Missense_Mutation p.S831F 0.45 deleterious(0.01) benign(0.276) TCGA-GN-A4U4-06 1 114372637 114372637 G A PTPN22 Missense_Mutation p.R690C 0.47 tolerated(0.07) probably_damaging(0.944) TCGA-GN-A4U4-06 1 115166206 115166206 G A DENND2C Missense_Mutation p.R289C 0.28 deleterious(0.01) possibly_damaging(0.453) TCGA-GN-A4U4-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.54 tolerated(0.06) benign(0.006) TCGA-GN-A4U4-06 1 115258788 115258788 C G NRAS 5'UTR 0.55 TCGA-GN-A4U4-06 1 115321893 115321893 G A SIKE1 Missense_Mutation p.S97F 0.58 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 1 115600211 115600211 C T TSPAN2 Missense_Mutation p.E155K 0.51 tolerated(0.87) benign(0.228) TCGA-GN-A4U4-06 1 117576493 117576493 C T CD101 Missense_Mutation p.P946S 0.32 tolerated(0.31) benign(0.009) TCGA-GN-A4U4-06 1 118530812 118530812 G A SPAG17 Missense_Mutation p.T1846I 0.27 tolerated(0.12) benign(0.005) TCGA-GN-A4U4-06 1 13940885 13940885 G A PDPN Missense_Mutation p.R230Q 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-GN-A4U4-06 1 142713875 142713875 G A RP11-417J8.6 RNA 0.08 TCGA-GN-A4U4-06 1 151139586 151139606 TTTCTCCTCAGGCTTGCAGCT - SCNM1 Splice_Site p.X71_splice 0.57 TCGA-GN-A4U4-06 1 152129199 152129199 C T RPTN Missense_Mutation p.E126K 0.28 deleterious(0.01) possibly_damaging(0.449) TCGA-GN-A4U4-06 1 152277116 152277116 C T FLG Missense_Mutation p.E3416K 0.56 unknown(0) TCGA-GN-A4U4-06 1 152287830 152287830 C T FLG Missense_Mutation p.E35K 0.25 possibly_damaging(0.5) TCGA-GN-A4U4-06 1 152799963 152799963 G A LCE1A Silent p.Q5Q 0.60 TCGA-GN-A4U4-06 1 153084954 153084954 C T SPRR2F 3'UTR 0.27 TCGA-GN-A4U4-06 1 155006462 155006462 G T DCST1 5'UTR 0.56 TCGA-GN-A4U4-06 1 155006463 155006463 G A DCST1 5'UTR 0.58 TCGA-GN-A4U4-06 1 157739827 157739827 G A FCRL2 Nonsense_Mutation p.Q142* 0.51 TCGA-GN-A4U4-06 1 15794027 15794027 C T CELA2A Silent p.I262I 0.39 TCGA-GN-A4U4-06 1 158227592 158227592 C T CD1A 3'UTR 0.22 TCGA-GN-A4U4-06 1 158368903 158368903 C T OR10T2 Silent p.V118V 0.56 TCGA-GN-A4U4-06 1 158435975 158435975 C T OR10K1 Silent p.V208V 0.55 TCGA-GN-A4U4-06 1 158636178 158636178 C T SPTA1 Silent p.G716G 0.58 TCGA-GN-A4U4-06 1 159163739 159163739 G A CADM3 Silent p.R234R 0.31 TCGA-GN-A4U4-06 1 160011957 160011957 G A KCNJ10 Silent p.S122S 0.58 TCGA-GN-A4U4-06 1 160011958 160011958 G A KCNJ10 Missense_Mutation p.S122F 0.58 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 1 165173261 165173261 G A LMX1A Silent p.F335F 0.28 TCGA-GN-A4U4-06 1 167023540 167023540 C T GPA33 3'UTR 0.45 TCGA-GN-A4U4-06 1 17046556 17046556 G A ESPNP RNA 0.10 TCGA-GN-A4U4-06 1 175067695 175067695 C T TNN Nonsense_Mutation p.Q695* 0.23 TCGA-GN-A4U4-06 1 176526069 176526069 G A PAPPA2 Missense_Mutation p.R204K 0.56 tolerated(0.82) benign(0.001) TCGA-GN-A4U4-06 1 176564145 176564145 C T PAPPA2 Missense_Mutation p.P469S 0.56 tolerated(0.12) benign(0.035) TCGA-GN-A4U4-06 1 176811656 176811656 G A PAPPA2 3'UTR 0.34 TCGA-GN-A4U4-06 1 176993856 176993856 C T ASTN1 Missense_Mutation p.R378Q 0.37 tolerated(0.08) probably_damaging(0.994) TCGA-GN-A4U4-06 1 176998830 176998830 C T ASTN1 Missense_Mutation p.E354K 0.41 tolerated_low_confidence(0.07) benign(0.045) TCGA-GN-A4U4-06 1 177249810 177249810 G A BRINP2 Missense_Mutation p.E500K 0.22 deleterious(0.01) possibly_damaging(0.551) TCGA-GN-A4U4-06 1 183109539 183109539 G T LAMC1 Missense_Mutation p.A1492S 0.26 tolerated(0.18) probably_damaging(0.997) TCGA-GN-A4U4-06 1 183273853 183273853 C T NMNAT2 Intron 0.51 TCGA-GN-A4U4-06 1 192548500 192548500 G A RGS1 3'UTR 0.19 TCGA-GN-A4U4-06 1 196438152 196438152 A T KCNT2 Missense_Mutation p.I144K 0.50 deleterious(0) benign(0.124) TCGA-GN-A4U4-06 1 196438154 196438154 T C KCNT2 Silent p.E143E 0.50 TCGA-GN-A4U4-06 1 197021838 197021838 G A F13B Missense_Mutation p.P494L 0.53 tolerated(0.14) benign(0.018) TCGA-GN-A4U4-06 1 200944036 200944036 G A KIF21B Silent p.I1540I 0.28 TCGA-GN-A4U4-06 1 201061109 201061109 C T CACNA1S Missense_Mutation p.G178R 0.51 tolerated(0.05) probably_damaging(0.996) TCGA-GN-A4U4-06 1 203708702 203708702 C T ATP2B4 Missense_Mutation p.S1113F 0.52 deleterious(0.01) possibly_damaging(0.787) TCGA-GN-A4U4-06 1 204587954 204587954 G A LRRN2 Silent p.F389F 0.28 TCGA-GN-A4U4-06 1 206613347 206613347 G A SRGAP2 Missense_Mutation p.R511K 0.22 tolerated(0.06) possibly_damaging(0.892) TCGA-GN-A4U4-06 1 208391105 208391105 C T PLXNA2 Missense_Mutation p.V55I 0.26 tolerated(0.14) probably_damaging(0.914) TCGA-GN-A4U4-06 1 20931479 20931479 C T CDA Silent p.I71I 0.31 TCGA-GN-A4U4-06 1 209778984 209778984 C T CAMK1G Silent p.L134L 0.21 TCGA-GN-A4U4-06 1 22150909 22150909 G A LDLRAD2 3'UTR 0.40 TCGA-GN-A4U4-06 1 222742985 222742986 TC A TAF1A Frame_Shift_Del p.D254Lfs*30 0.29 TCGA-GN-A4U4-06 1 228246797 228246797 C T WNT3A Silent p.F230F 0.61 TCGA-GN-A4U4-06 1 23232545 23232545 G A EPHB2 Missense_Mutation p.E612K 0.29 tolerated(0.06) probably_damaging(0.939) TCGA-GN-A4U4-06 1 234454596 234454596 C T SLC35F3 Missense_Mutation p.P352S 0.26 tolerated(0.41) probably_damaging(0.999) TCGA-GN-A4U4-06 1 237777681 237777681 C T RYR2 Silent p.I1751I 0.28 TCGA-GN-A4U4-06 1 24201912 24201912 G A CNR2 Missense_Mutation p.R66W 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A4U4-06 1 242271053 242271053 C T PLD5 Missense_Mutation p.E387K 0.25 tolerated(0.55) benign(0.005) TCGA-GN-A4U4-06 1 247875138 247875138 C T OR6F1 Missense_Mutation p.G307E 0.60 tolerated(0.34) benign(0.043) TCGA-GN-A4U4-06 1 247875320 247875320 G C OR6F1 Silent p.T246T 0.58 TCGA-GN-A4U4-06 1 248112934 248112934 C T OR2L8 Silent p.L259L 0.33 TCGA-GN-A4U4-06 1 248112949 248112949 C T OR2L8 Silent p.L264L 0.57 TCGA-GN-A4U4-06 1 248616589 248616589 C T OR2T2 Missense_Mutation p.T164I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U4-06 1 248756416 248756416 G A OR2T10 Silent p.Y218Y 0.53 TCGA-GN-A4U4-06 1 32280897 32280897 C T SPOCD1 Missense_Mutation p.G13E 0.25 tolerated(1) benign(0) TCGA-GN-A4U4-06 1 34182070 34182070 C T CSMD2 Silent p.L971L 0.40 TCGA-GN-A4U4-06 1 38272656 38272656 G A YRDC Intron 0.34 TCGA-GN-A4U4-06 1 43630414 43630414 G A EBNA1BP2 Missense_Mutation p.S312L 0.28 deleterious(0.05) benign(0.029) TCGA-GN-A4U4-06 1 47282765 47282765 G C CYP4B1 Missense_Mutation p.E373D 0.39 deleterious(0) probably_damaging(0.952) TCGA-GN-A4U4-06 1 47650740 47650740 C T PDZK1IP1 Missense_Mutation p.G69E 0.30 tolerated(0.36) possibly_damaging(0.805) TCGA-GN-A4U4-06 1 52940709 52940709 G A ZCCHC11 Missense_Mutation p.S841L 0.33 tolerated(0.13) benign(0.408) TCGA-GN-A4U4-06 1 52947285 52947285 C T ZCCHC11 Missense_Mutation p.R553K 0.42 tolerated(0.71) benign(0.367) TCGA-GN-A4U4-06 1 57170069 57170069 G A PRKAA2 Missense_Mutation p.G405E 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 1 60521106 60521106 C T C1orf87 Missense_Mutation p.E38K 0.41 tolerated(0.28) benign(0.086) TCGA-GN-A4U4-06 1 6324581 6324581 G A ACOT7 3'UTR 0.37 TCGA-GN-A4U4-06 1 6530407 6530407 C T PLEKHG5 Silent p.K642K 0.57 TCGA-GN-A4U4-06 1 67705956 67705956 C T IL23R Silent p.F380F 0.36 TCGA-GN-A4U4-06 1 72163754 72163754 C T NEGR1 Missense_Mutation p.E202K 0.35 deleterious(0) probably_damaging(0.966) TCGA-GN-A4U4-06 1 75101981 75101981 C T C1orf173 Missense_Mutation p.A196T 0.35 tolerated(0.11) benign(0.035) TCGA-GN-A4U4-06 1 7912982 7912982 C T UTS2 Missense_Mutation p.E43K 0.58 deleterious(0) benign(0.201) TCGA-GN-A4U4-06 1 82372829 82372829 G A LPHN2 Silent p.T67T 0.38 TCGA-GN-A4U4-06 1 93303020 93303020 C T RPL5 Nonsense_Mutation p.R179* 0.35 TCGA-GN-A4U4-06 1 94528179 94528179 C T ABCA4 Missense_Mutation p.G631R 0.45 deleterious(0.03) probably_damaging(0.994) TCGA-GN-A4U4-06 1 97915658 97915658 C T DPYD Nonsense_Mutation p.W621* 0.39 TCGA-GN-A4U4-06 20 1961563 1961563 C T PDYN Silent p.E57E 0.40 TCGA-GN-A4U4-06 20 2775010 2775010 G A CPXM1 Silent p.G677G 0.45 TCGA-GN-A4U4-06 20 30408182 30408182 G A MYLK2 Silent p.A102A 0.33 TCGA-GN-A4U4-06 20 30584363 30584363 G A XKR7 Silent p.Q281Q 0.57 TCGA-GN-A4U4-06 20 307523 307523 C T SOX12 3'UTR 0.22 TCGA-GN-A4U4-06 20 33875198 33875198 G A FAM83C Silent p.L462L 0.34 TCGA-GN-A4U4-06 20 42354906 42354906 G A GTSF1L Silent p.I143I 0.35 TCGA-GN-A4U4-06 20 44672328 44672328 C T SLC12A5 Missense_Mutation p.P455S 0.33 deleterious(0.02) probably_damaging(0.951) TCGA-GN-A4U4-06 20 4705302 4705302 G A PRND Nonsense_Mutation p.W35* 0.33 TCGA-GN-A4U4-06 20 47244153 47244153 C T PREX1 Missense_Mutation p.G1624S 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 20 472937 472937 G A CSNK2A1 Silent p.S194S 0.25 TCGA-GN-A4U4-06 20 52789588 52789588 G A CYP24A1 Silent p.S103S 0.39 TCGA-GN-A4U4-06 20 57768675 57768675 G A ZNF831 Silent p.G867G 0.32 TCGA-GN-A4U4-06 20 5903093 5903093 G A CHGB Silent p.R101R 0.38 TCGA-GN-A4U4-06 20 60589625 60589625 G A TAF4 Missense_Mutation p.P500L 0.43 possibly_damaging(0.666) TCGA-GN-A4U4-06 20 61040905 61040905 C T GATA5 Missense_Mutation p.A300T 0.29 tolerated(0.73) benign(0.001) TCGA-GN-A4U4-06 20 61467860 61467860 G A COL9A3 Missense_Mutation p.E527K 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A4U4-06 20 62904828 62904828 G A PCMTD2 Missense_Mutation p.E321K 0.36 tolerated_low_confidence(0.14) benign(0.002) TCGA-GN-A4U4-06 21 11039268 11039268 C T BAGE2 RNA 0.07 TCGA-GN-A4U4-06 21 43710238 43710238 G A ABCG1 Missense_Mutation p.E447K 0.33 deleterious(0) benign(0.322) TCGA-GN-A4U4-06 21 45833861 45833861 G A TRPM2 Missense_Mutation p.R1017K 0.38 tolerated(0.52) benign(0.002) TCGA-GN-A4U4-06 21 47966973 47966973 C T DIP2A Intron 0.47 TCGA-GN-A4U4-06 21 47987675 47987675 C T DIP2A 3'UTR 0.47 TCGA-GN-A4U4-06 22 16269896 16269896 C T POTEH Missense_Mutation p.G429R 0.15 tolerated(0.12) possibly_damaging(0.766) TCGA-GN-A4U4-06 22 17978463 17978463 C T CECR2 Missense_Mutation p.R102C 0.46 deleterious(0) probably_damaging(0.959) TCGA-GN-A4U4-06 22 19127225 19127225 G A DGCR14 Silent p.L196L 0.32 TCGA-GN-A4U4-06 22 19956206 19956206 G T COMT Missense_Mutation p.D255Y 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 22 20130340 20130340 C T ZDHHC8 Missense_Mutation p.S396F 0.44 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 22 22890729 22890729 G A PRAME Silent p.L430L 0.40 TCGA-GN-A4U4-06 22 24121399 24121399 G A MMP11 Missense_Mutation p.R45K 0.38 tolerated_low_confidence(0.77) benign(0.067) TCGA-GN-A4U4-06 22 25121453 25121453 G C PIWIL3 Missense_Mutation p.T689R 0.36 tolerated(1) possibly_damaging(0.796) TCGA-GN-A4U4-06 22 31334093 31334093 G C MORC2 Missense_Mutation p.I329M 0.33 deleterious(0) possibly_damaging(0.664) TCGA-GN-A4U4-06 22 31334094 31334094 A C MORC2 Missense_Mutation p.I329S 0.33 deleterious(0) benign(0.052) TCGA-GN-A4U4-06 22 38369841 38369841 G A SOX10 Silent p.A354A 0.44 TCGA-GN-A4U4-06 22 39222597 39222597 T G NPTXR Missense_Mutation p.T336P 0.34 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 22 39380174 39380174 G A APOBEC3B Missense_Mutation p.E38K 0.35 tolerated(0.2) probably_damaging(0.973) TCGA-GN-A4U4-06 22 40283440 40283440 C T ENTHD1 Missense_Mutation p.D105N 0.40 deleterious(0) probably_damaging(0.931) TCGA-GN-A4U4-06 22 45309861 45309861 G A PHF21B Silent p.P224P 0.44 TCGA-GN-A4U4-06 22 45596845 45596846 - G KIAA0930 Intron 0.29 TCGA-GN-A4U4-06 22 50659988 50659988 G A TUBGCP6 Missense_Mutation p.P934S 0.26 tolerated(0.17) benign(0.112) TCGA-GN-A4U4-06 22 50832548 50832548 G A PPP6R2 Missense_Mutation p.E71K 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 2 102490116 102490116 C T MAP4K4 Missense_Mutation p.S842F 0.36 tolerated_low_confidence(0.07) probably_damaging(0.921) TCGA-GN-A4U4-06 2 103148803 103148803 G A SLC9A4 Missense_Mutation p.D685N 0.39 deleterious(0.03) benign(0.107) TCGA-GN-A4U4-06 2 103380833 103380833 C T TMEM182 Missense_Mutation p.P93L 0.08 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U4-06 2 106710531 106710531 G A UXS1 Missense_Mutation p.P410L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A4U4-06 2 109524342 109524342 A - EDAR Frame_Shift_Del p.S313Lfs*59 0.25 TCGA-GN-A4U4-06 2 11725355 11725355 C T GREB1 Missense_Mutation p.P324S 0.27 tolerated(0.59) benign(0.001) TCGA-GN-A4U4-06 2 128083346 128083346 G A MAP3K2 Missense_Mutation p.S212F 0.45 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U4-06 2 131099446 131099446 G A CCDC115 Silent p.S61S 0.39 TCGA-GN-A4U4-06 2 135095839 135095839 C T MGAT5 Missense_Mutation p.R219C 0.25 deleterious(0) possibly_damaging(0.785) TCGA-GN-A4U4-06 2 136567097 136567097 C T LCT Silent p.G940G 0.39 TCGA-GN-A4U4-06 2 137814163 137814163 C T THSD7B Nonsense_Mutation p.Q105* 0.44 TCGA-GN-A4U4-06 2 138378223 138378223 G A THSD7B Silent p.V1245V 0.34 TCGA-GN-A4U4-06 2 141986780 141986780 C T LRP1B Nonsense_Mutation p.W274* 0.28 TCGA-GN-A4U4-06 2 1426872 1426872 G A TPO Silent p.V50V 0.35 TCGA-GN-A4U4-06 2 1437330 1437330 G A TPO Silent p.A100A 0.37 TCGA-GN-A4U4-06 2 149247552 149247552 C T MBD5 Missense_Mutation p.H1218Y 0.35 tolerated_low_confidence(0.28) unknown(0) TCGA-GN-A4U4-06 2 152384066 152384066 C T NEB Missense_Mutation p.A7257T 0.27 probably_damaging(0.976) TCGA-GN-A4U4-06 2 166179959 166179959 C A SCN2A Silent p.S655S 0.53 TCGA-GN-A4U4-06 2 166245578 166245578 C T SCN2A Silent p.F1754F 0.33 TCGA-GN-A4U4-06 2 170917670 170917670 G A UBR3 Missense_Mutation p.E1623K 0.32 tolerated(0.28) benign(0.001) TCGA-GN-A4U4-06 2 176981927 176981927 A T HOXD10 Missense_Mutation p.K122N 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-GN-A4U4-06 2 179323240 179323240 C T DFNB59 Missense_Mutation p.H185Y 0.30 tolerated(1) benign(0.14) TCGA-GN-A4U4-06 2 179468872 179468872 C T TTN Missense_Mutation p.G18181E 0.38 TCGA-GN-A4U4-06 2 179499914 179499914 C T TTN Missense_Mutation p.G14001E 0.31 TCGA-GN-A4U4-06 2 179523498 179523498 C T TTN Missense_Mutation p.E12493K 0.38 TCGA-GN-A4U4-06 2 179595882 179595882 C T TTN Missense_Mutation p.G5837E 0.37 TCGA-GN-A4U4-06 2 179642012 179642012 C T TTN Missense_Mutation p.E1560K 0.39 TCGA-GN-A4U4-06 2 179649069 179649069 C T TTN Missense_Mutation p.A835T 0.37 TCGA-GN-A4U4-06 2 182344910 182344910 C G ITGA4 Missense_Mutation p.S224C 0.36 deleterious(0) probably_damaging(0.94) TCGA-GN-A4U4-06 2 182850781 182850781 C T PPP1R1C 5'UTR 0.36 TCGA-GN-A4U4-06 2 185803700 185803700 C T ZNF804A Missense_Mutation p.P1193S 0.35 tolerated(0.12) probably_damaging(0.992) TCGA-GN-A4U4-06 2 189599203 189599203 A C DIRC1 3'UTR 0.32 TCGA-GN-A4U4-06 2 189854121 189854121 G A COL3A1 Splice_Site p.X213_splice 0.43 TCGA-GN-A4U4-06 2 189929294 189929294 G A COL5A2 Missense_Mutation p.P569S 0.35 possibly_damaging(0.869) TCGA-GN-A4U4-06 2 189933514 189933514 G A COL5A2 Missense_Mutation p.P419S 0.25 probably_damaging(0.989) TCGA-GN-A4U4-06 2 192280925 192280925 C T MYO1B Missense_Mutation p.L1082F 0.37 tolerated(0.05) possibly_damaging(0.694) TCGA-GN-A4U4-06 2 196642628 196642628 T A DNAH7 Missense_Mutation p.T3654S 0.44 deleterious(0.04) benign(0.279) TCGA-GN-A4U4-06 2 198267481 198267481 T A SF3B1 Missense_Mutation p.N626Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U4-06 2 209180027 209180027 A C PIKFYVE Missense_Mutation p.Q646P 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-GN-A4U4-06 2 210574681 210574681 A G MAP2 Silent p.T1592T 0.33 TCGA-GN-A4U4-06 2 212488718 212488718 G A ERBB4 Missense_Mutation p.R711C 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-GN-A4U4-06 2 216274397 216274397 C T FN1 Missense_Mutation p.E730K 0.31 deleterious(0) probably_damaging(0.987) TCGA-GN-A4U4-06 2 217142480 217142480 G A MARCH4 Silent p.F260F 0.43 TCGA-GN-A4U4-06 2 219492868 219492868 A G PLCD4 Missense_Mutation p.N297D 0.34 deleterious(0.03) benign(0.328) TCGA-GN-A4U4-06 2 219920312 219920312 C T IHH Missense_Mutation p.E285K 0.34 tolerated(0.55) benign(0.008) TCGA-GN-A4U4-06 2 222301148 222301148 C T EPHA4 Missense_Mutation p.D773N 0.37 tolerated(0.08) probably_damaging(0.926) TCGA-GN-A4U4-06 2 227966606 227966606 C T COL4A4 Missense_Mutation p.G317E 0.47 probably_damaging(0.999) TCGA-GN-A4U4-06 2 228881468 228881468 G A SPHKAP Missense_Mutation p.L1368F 0.43 tolerated(0.66) benign(0.002) TCGA-GN-A4U4-06 2 230910800 230910800 C T SLC16A14 Missense_Mutation p.E348K 0.29 deleterious(0.02) benign(0.328) TCGA-GN-A4U4-06 2 233349798 233349798 G A ECEL1 Silent p.L287L 0.33 TCGA-GN-A4U4-06 2 234184449 234184449 C T ATG16L1 Intron 0.37 TCGA-GN-A4U4-06 2 237172889 237172889 C T ASB18 Missense_Mutation p.D34N 0.34 tolerated(0.11) benign(0.014) TCGA-GN-A4U4-06 2 237272514 237272514 C T IQCA1 Missense_Mutation p.G593E 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 2 242401950 242401950 G A FARP2 Missense_Mutation p.D534N 0.56 deleterious(0) probably_damaging(0.945) TCGA-GN-A4U4-06 2 242545739 242545739 G A THAP4 Silent p.L464L 0.55 TCGA-GN-A4U4-06 2 242793085 242793085 C A PDCD1 3'UTR 0.38 TCGA-GN-A4U4-06 2 28635187 28635187 C T FOSL2 Missense_Mutation p.P285S 0.34 deleterious(0) benign(0.388) TCGA-GN-A4U4-06 2 29498006 29498006 C T ALK Missense_Mutation p.G667E 0.25 tolerated(1) benign(0.013) TCGA-GN-A4U4-06 2 31754392 31754392 G A AL133247.2 Intron 0.38 TCGA-GN-A4U4-06 2 32828135 32828135 C A BIRC6 Silent p.T4685T 0.32 TCGA-GN-A4U4-06 2 38978475 38978475 T A SRSF7 5'UTR 0.40 TCGA-GN-A4U4-06 2 42543112 42543112 C T EML4 Silent p.L660L 0.38 TCGA-GN-A4U4-06 2 42671136 42671136 G A KCNG3 Missense_Mutation p.H417Y 0.40 tolerated(0.27) probably_damaging(0.993) TCGA-GN-A4U4-06 2 48950608 48950608 C T LHCGR Missense_Mutation p.E175K 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A4U4-06 2 60687680 60687680 C T BCL11A Missense_Mutation p.M789I 0.33 deleterious(0) possibly_damaging(0.795) TCGA-GN-A4U4-06 2 61430389 61430389 C T USP34 Missense_Mutation p.D3132N 0.36 tolerated(0.16) benign(0.013) TCGA-GN-A4U4-06 2 66798424 66798424 G A MEIS1 3'UTR 0.31 TCGA-GN-A4U4-06 2 69748027 69748027 G A AAK1 Silent p.P383P 0.39 TCGA-GN-A4U4-06 2 70122296 70122296 G A SNRNP27 Silent p.E35E 0.38 TCGA-GN-A4U4-06 2 70502244 70502244 G A PCYOX1 Missense_Mutation p.M216I 0.34 tolerated(0.64) benign(0.002) TCGA-GN-A4U4-06 2 70890552 70890552 A C ADD2 3'UTR 0.34 TCGA-GN-A4U4-06 2 71360300 71360300 A G MPHOSPH10 Missense_Mutation p.E121G 0.48 deleterious(0.05) benign(0.154) TCGA-GN-A4U4-06 2 74466653 74466653 G A SLC4A5 Missense_Mutation p.L710F 0.34 tolerated(0.54) benign(0.02) TCGA-GN-A4U4-06 2 75425860 75425860 C T TACR1 Silent p.T67T 0.52 TCGA-GN-A4U4-06 2 79254180 79254180 C T REG3G Silent p.P72P 0.25 TCGA-GN-A4U4-06 2 89999507 89999507 G A IGKV2D-28 Silent p.V103V 0.35 TCGA-GN-A4U4-06 2 95497824 95497824 C T ANKRD20A8P RNA 0.32 TCGA-GN-A4U4-06 2 97217112 97217112 G A ARID5A Missense_Mutation p.G283R 0.33 deleterious(0.04) benign(0.129) TCGA-GN-A4U4-06 3 10442709 10442709 C T ATP2B2 Missense_Mutation p.D237N 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U4-06 3 107885727 107885727 G A IFT57 Missense_Mutation p.R319C 0.30 deleterious(0.02) possibly_damaging(0.709) TCGA-GN-A4U4-06 3 108100210 108100210 C T MYH15 3'UTR 0.42 TCGA-GN-A4U4-06 3 108172972 108172972 C T MYH15 Silent p.G780G 0.35 TCGA-GN-A4U4-06 3 111797602 111797602 C T TMPRSS7 Silent p.S620S 0.36 TCGA-GN-A4U4-06 3 113082376 113082376 C T WDR52 Missense_Mutation p.G907R 0.39 tolerated(0.09) probably_damaging(0.983) TCGA-GN-A4U4-06 3 113955475 113955475 G A ZNF80 Silent p.I149I 0.38 TCGA-GN-A4U4-06 3 120840528 120840528 G A STXBP5L Missense_Mutation p.D216N 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 3 121341742 121341742 C T FBXO40 Missense_Mutation p.P489L 0.29 deleterious(0.01) benign(0.373) TCGA-GN-A4U4-06 3 121712329 121712329 C T ILDR1 Missense_Mutation p.D423N 0.49 tolerated(0.07) benign(0.007) TCGA-GN-A4U4-06 3 121980431 121980431 C T CASR Silent p.F183F 0.38 TCGA-GN-A4U4-06 3 122003539 122003539 C T CASR Missense_Mutation p.S923F 0.31 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-GN-A4U4-06 3 122060442 122060442 C T CSTA 3'UTR 0.40 TCGA-GN-A4U4-06 3 122271276 122271276 G A PARP9 Missense_Mutation p.P401S 0.34 tolerated(0.79) benign(0.007) TCGA-GN-A4U4-06 3 124438107 124438107 G A RP11-71H17.7 5'Flank 0.30 TCGA-GN-A4U4-06 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.35 deleterious(0.01) benign(0.226) TCGA-GN-A4U4-06 3 134825406 134825406 T C EPHB1 Missense_Mutation p.Y308H 0.40 tolerated(0.06) benign(0.044) TCGA-GN-A4U4-06 3 138218871 138218871 C T CEP70 Intron 0.41 TCGA-GN-A4U4-06 3 148459740 148459740 G A AGTR1 Silent p.G306G 0.32 TCGA-GN-A4U4-06 3 151165356 151165356 C T IGSF10 Missense_Mutation p.E805K 0.41 deleterious(0.03) possibly_damaging(0.629) TCGA-GN-A4U4-06 3 154007527 154007527 G A DHX36 Missense_Mutation p.P635S 0.36 tolerated(0.18) benign(0.186) TCGA-GN-A4U4-06 3 15495392 15495392 C T COLQ Silent p.V414V 0.26 TCGA-GN-A4U4-06 3 156868170 156868170 C T CCNL1 Nonsense_Mutation p.W225* 0.30 TCGA-GN-A4U4-06 3 156868171 156868171 C T CCNL1 Splice_Site p.X225_splice 0.29 TCGA-GN-A4U4-06 3 157820623 157820623 T C SHOX2 Silent p.E157E 0.37 TCGA-GN-A4U4-06 3 16633647 16633647 C T DAZL Silent p.V268V 0.29 TCGA-GN-A4U4-06 3 169639033 169639033 G A SAMD7 Missense_Mutation p.D40N 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 3 169642892 169642892 G A SAMD7 Silent p.R86R 0.29 TCGA-GN-A4U4-06 3 179478950 179478950 C T USP13 Missense_Mutation p.P667S 0.37 deleterious(0.03) probably_damaging(1) TCGA-GN-A4U4-06 3 183217534 183217534 C T KLHL6 Missense_Mutation p.E331K 0.60 tolerated(0.35) possibly_damaging(0.793) TCGA-GN-A4U4-06 3 18393501 18393501 G A SATB1 Missense_Mutation p.P588S 0.30 tolerated(0.38) benign(0.005) TCGA-GN-A4U4-06 3 18436239 18436239 G A SATB1 Silent p.L307L 0.36 TCGA-GN-A4U4-06 3 186459315 186459315 C T KNG1 Missense_Mutation p.S377L 0.39 tolerated(0.31) benign(0.003) TCGA-GN-A4U4-06 3 186571052 186571052 G A ADIPOQ Missense_Mutation p.G69R 0.46 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 3 189586498 189586498 G A TP63 Silent p.T374T 0.34 TCGA-GN-A4U4-06 3 195709033 195709033 C A SDHAP1 Intron 0.15 TCGA-GN-A4U4-06 3 196083527 196083527 G A UBXN7 3'UTR 0.36 TCGA-GN-A4U4-06 3 196678748 196678748 G C PIGZ Missense_Mutation p.P52R 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 3 21462822 21462822 G A ZNF385D Nonsense_Mutation p.R358* 0.41 TCGA-GN-A4U4-06 3 21792458 21792458 C T ZNF385D 5'UTR 0.43 TCGA-GN-A4U4-06 3 35732408 35732408 C T ARPP21 Silent p.V199V 0.41 TCGA-GN-A4U4-06 3 36872607 36872607 G A TRANK1 Missense_Mutation p.H2779Y 0.45 tolerated(1) benign(0.001) TCGA-GN-A4U4-06 3 38739391 38739391 G A SCN10A Missense_Mutation p.P1774S 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 3 38802765 38802765 G A SCN10A Silent p.L267L 0.48 TCGA-GN-A4U4-06 3 38812793 38812793 C T SCN10A Silent p.L192L 0.31 TCGA-GN-A4U4-06 3 39307644 39307644 G A CX3CR1 Silent p.F151F 0.36 TCGA-GN-A4U4-06 3 419601 419601 G A CHL1 Missense_Mutation p.D618N 0.34 tolerated(0.1) benign(0.008) TCGA-GN-A4U4-06 3 44612295 44612295 T C ZKSCAN7 Missense_Mutation p.C565R 0.30 tolerated(0.12) possibly_damaging(0.774) TCGA-GN-A4U4-06 3 44683986 44683986 A G ZNF197 Missense_Mutation p.K455R 0.41 deleterious(0.02) possibly_damaging(0.789) TCGA-GN-A4U4-06 3 45874551 45874551 G A LZTFL1 Silent p.L149L 0.38 TCGA-GN-A4U4-06 3 46245377 46245377 C T CCR1 Missense_Mutation p.R143Q 0.35 tolerated(0.15) benign(0.102) TCGA-GN-A4U4-06 3 46620608 46620608 C T TDGF1 Missense_Mutation p.S20F 0.38 deleterious(0) probably_damaging(0.994) TCGA-GN-A4U4-06 3 46717864 46717864 C T ALS2CL Missense_Mutation p.G686E 0.33 deleterious(0) probably_damaging(0.928) TCGA-GN-A4U4-06 3 48456735 48456735 G A PLXNB1 Silent p.V1272V 0.42 TCGA-GN-A4U4-06 3 49934757 49934757 G A MST1R Silent p.T713T 0.38 TCGA-GN-A4U4-06 3 51399381 51399381 G A DOCK3 Missense_Mutation p.D1700N 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-GN-A4U4-06 3 52003831 52003831 G A ABHD14B Intron 0.48 TCGA-GN-A4U4-06 3 52550583 52550583 G A STAB1 Silent p.R1422R 0.35 TCGA-GN-A4U4-06 3 52812968 52812968 G A ITIH1 Missense_Mutation p.G106R 0.34 deleterious(0.03) benign(0.042) TCGA-GN-A4U4-06 3 56468796 56468796 C T ERC2 Missense_Mutation p.M80I 0.43 deleterious(0.02) benign(0.15) TCGA-GN-A4U4-06 3 62463999 62463999 C T CADPS Missense_Mutation p.G1089E 0.41 deleterious(0.04) possibly_damaging(0.629) TCGA-GN-A4U4-06 3 63981493 63981493 C T ATXN7 Silent p.S665S 0.33 TCGA-GN-A4U4-06 3 77626767 77626767 T A ROBO2 Splice_Site p.X792_splice 0.37 TCGA-GN-A4U4-06 3 95374370 95374370 C T MTHFD2P1 RNA 0.32 TCGA-GN-A4U4-06 3 96963125 96963125 C T EPHA6 Nonsense_Mutation p.Q534* 0.37 TCGA-GN-A4U4-06 3 97251297 97251297 C T EPHA6 Missense_Mutation p.R766W 0.34 deleterious(0) probably_damaging(0.971) TCGA-GN-A4U4-06 3 97311558 97311558 C T EPHA6 Missense_Mutation p.S830F 0.43 tolerated_low_confidence(0.55) benign(0.002) TCGA-GN-A4U4-06 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.25 deleterious(0.01) possibly_damaging(0.595) TCGA-GN-A4U4-06 3 97983330 97983330 G A OR5H6 Missense_Mutation p.D68N 0.39 deleterious(0.03) benign(0.033) TCGA-GN-A4U4-06 3 98001786 98001786 C T OR5H2 Missense_Mutation p.L19F 0.41 deleterious(0.03) benign(0.32) TCGA-GN-A4U4-06 4 106640681 106640681 C T GSTCD Silent p.F297F 0.33 TCGA-GN-A4U4-06 4 111463936 111463936 G A ENPEP Missense_Mutation p.G613R 0.30 tolerated(0.16) benign(0.434) TCGA-GN-A4U4-06 4 119613141 119613141 A T METTL14 Silent p.T110T 0.31 TCGA-GN-A4U4-06 4 119613142 119613142 C T METTL14 Nonsense_Mutation p.Q111* 0.31 TCGA-GN-A4U4-06 4 119951996 119951996 G A SYNPO2 Missense_Mutation p.R689K 0.23 tolerated(0.29) benign(0.365) TCGA-GN-A4U4-06 4 119951997 119951997 G A SYNPO2 Silent p.R689R 0.25 TCGA-GN-A4U4-06 4 122078270 122078270 C T TNIP3 Silent p.R191R 0.36 TCGA-GN-A4U4-06 4 126372418 126372418 G A FAT4 Missense_Mutation p.G3416E 0.40 probably_damaging(1) TCGA-GN-A4U4-06 4 126412034 126412034 C T FAT4 Missense_Mutation p.S4686F 0.31 possibly_damaging(0.774) TCGA-GN-A4U4-06 4 13338795 13338795 G A HSP90AB2P RNA 0.40 TCGA-GN-A4U4-06 4 139101888 139101888 G A SLC7A11 Silent p.F391F 0.42 TCGA-GN-A4U4-06 4 140640985 140640985 C T MAML3 Missense_Mutation p.G970D 0.33 possibly_damaging(0.58) TCGA-GN-A4U4-06 4 143081585 143081585 G A INPP4B Missense_Mutation p.P497S 0.39 tolerated(0.56) benign(0.004) TCGA-GN-A4U4-06 4 155505958 155505958 G A FGA Missense_Mutation p.P640L 0.33 tolerated(0.23) probably_damaging(0.979) TCGA-GN-A4U4-06 4 156753060 156753060 G A ASIC5 Missense_Mutation p.L415F 0.34 tolerated(0.06) benign(0.145) TCGA-GN-A4U4-06 4 158057667 158057667 G A GLRB Missense_Mutation p.R115K 0.39 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U4-06 4 15964132 15964132 C T FGFBP2 Nonsense_Mutation p.W207* 0.41 TCGA-GN-A4U4-06 4 164247557 164247557 C T NPY1R Silent p.V50V 0.36 TCGA-GN-A4U4-06 4 169227537 169227537 G A DDX60 Missense_Mutation p.S200F 0.30 tolerated(1) benign(0) TCGA-GN-A4U4-06 4 169351717 169351717 G A DDX60L Missense_Mutation p.S530L 0.45 deleterious(0) probably_damaging(0.938) TCGA-GN-A4U4-06 4 174089919 174089919 G A GALNT7 5'UTR 0.69 TCGA-GN-A4U4-06 4 174089920 174089920 G A GALNT7 5'UTR 0.65 TCGA-GN-A4U4-06 4 176555941 176555941 C A GPM6A 3'UTR 0.24 TCGA-GN-A4U4-06 4 1902632 1902632 C T WHSC1 Missense_Mutation p.S84F 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 4 20493408 20493408 C T SLIT2 Missense_Mutation p.S267F 0.38 deleterious(0.01) benign(0.091) TCGA-GN-A4U4-06 4 2702161 2702161 C T FAM193A Missense_Mutation p.P1130L 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-GN-A4U4-06 4 3446379 3446379 G A HGFAC Missense_Mutation p.G254S 0.39 deleterious(0.05) possibly_damaging(0.829) TCGA-GN-A4U4-06 4 42416644 42416644 G A ATP8A1 Missense_Mutation p.H1133Y 0.37 tolerated(0.1) possibly_damaging(0.891) TCGA-GN-A4U4-06 4 42466932 42466932 G A ATP8A1 Missense_Mutation p.S829F 0.46 deleterious(0) probably_damaging(0.991) TCGA-GN-A4U4-06 4 44449631 44449631 G A KCTD8 Nonsense_Mutation p.Q304* 0.34 TCGA-GN-A4U4-06 4 57204545 57204545 A T AASDH 3'UTR 0.37 TCGA-GN-A4U4-06 4 69512694 69512694 T C UGT2B15 3'UTR 0.59 TCGA-GN-A4U4-06 4 69796346 69796346 C T UGT2A3 Missense_Mutation p.G408R 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 4 69796373 69796373 C T UGT2A3 Missense_Mutation p.D399N 0.38 deleterious(0.03) probably_damaging(0.915) TCGA-GN-A4U4-06 4 69817431 69817431 G A UGT2A3 Silent p.F16F 0.25 TCGA-GN-A4U4-06 4 70148333 70148333 G A UGT2B28 Missense_Mutation p.D275N 0.39 deleterious(0) possibly_damaging(0.71) TCGA-GN-A4U4-06 4 71024057 71024057 G A C4orf40 Missense_Mutation p.D30N 0.31 tolerated(1) benign(0.202) TCGA-GN-A4U4-06 4 71255422 71255422 G A SMR3B Missense_Mutation p.G33R 0.39 tolerated_low_confidence(0.05) unknown(0) TCGA-GN-A4U4-06 4 73923904 73923904 G A COX18 Missense_Mutation p.T310I 0.32 deleterious(0) benign(0.265) TCGA-GN-A4U4-06 4 8009923 8009923 T C ABLIM2 Missense_Mutation p.K494R 0.40 tolerated(0.25) benign(0.026) TCGA-GN-A4U4-06 4 85676482 85676482 G A WDFY3 Silent p.I1832I 0.43 TCGA-GN-A4U4-06 4 88535191 88535191 C T DSPP Silent p.S459S 0.37 TCGA-GN-A4U4-06 5 101724397 101724397 C T SLCO6A1 Missense_Mutation p.G671E 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-GN-A4U4-06 5 101794106 101794106 C T SLCO6A1 Missense_Mutation p.D371N 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A4U4-06 5 101794107 101794107 C T SLCO6A1 Silent p.K370K 0.28 TCGA-GN-A4U4-06 5 112769679 112769679 C T TSSK1B Silent p.K286K 0.34 TCGA-GN-A4U4-06 5 118506206 118506206 C T DMXL1 Missense_Mutation p.S1907F 0.36 tolerated(0.07) benign(0.08) TCGA-GN-A4U4-06 5 122727023 122727023 G A CEP120 Silent p.L273L 0.35 TCGA-GN-A4U4-06 5 137071477 137071477 C T KLHL3 5'UTR 0.48 TCGA-GN-A4U4-06 5 13769246 13769246 C T DNAH5 Splice_Site p.X3241_splice 0.39 TCGA-GN-A4U4-06 5 139938081 139938081 G A APBB3 3'UTR 0.34 TCGA-GN-A4U4-06 5 139938082 139938082 G A APBB3 3'UTR 0.34 TCGA-GN-A4U4-06 5 140249988 140249988 C T PCDHA11 Silent p.L434L 0.42 TCGA-GN-A4U4-06 5 140307259 140307259 A G PCDHAC1 Missense_Mutation p.D261G 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 5 140553020 140553020 C T PCDHB7 Missense_Mutation p.R202W 0.39 deleterious_low_confidence(0.04) benign(0.268) TCGA-GN-A4U4-06 5 140603892 140603892 G A PCDHB14 Missense_Mutation p.G272E 0.32 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-GN-A4U4-06 5 140732067 140732067 C T PCDHGB1 Missense_Mutation p.S747F 0.44 deleterious(0.01) possibly_damaging(0.907) TCGA-GN-A4U4-06 5 140784075 140784075 C T PCDHGA9 Missense_Mutation p.S519F 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A4U4-06 5 145610319 145610319 C T RBM27 Missense_Mutation p.S230F 0.41 tolerated(0.24) benign(0.138) TCGA-GN-A4U4-06 5 153857587 153857587 C T HAND1 5'UTR 0.38 TCGA-GN-A4U4-06 5 154396841 154396841 C T KIF4B Missense_Mutation p.S1141F 0.43 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-GN-A4U4-06 5 167625870 167625870 C T TENM2 Silent p.I971I 0.35 TCGA-GN-A4U4-06 5 178358896 178358896 C T ZFP2 Silent p.A194A 0.38 TCGA-GN-A4U4-06 5 180041160 180041160 C T FLT4 Nonsense_Mutation p.W1080* 0.38 TCGA-GN-A4U4-06 5 19571831 19571831 C T CDH18 Silent p.L370L 0.42 TCGA-GN-A4U4-06 5 23524492 23524492 C T PRDM9 Nonsense_Mutation p.Q334* 0.29 TCGA-GN-A4U4-06 5 23527151 23527151 C T PRDM9 Missense_Mutation p.L652F 0.30 tolerated(0.05) possibly_damaging(0.903) TCGA-GN-A4U4-06 5 34915823 34915823 G C RAD1 5'UTR 0.30 TCGA-GN-A4U4-06 5 35875811 35875811 G A IL7R Intron 0.40 TCGA-GN-A4U4-06 5 41176598 41176598 T C C6 Missense_Mutation p.S383G 0.40 tolerated(0.08) benign(0.01) TCGA-GN-A4U4-06 5 53814866 53814866 C T SNX18 Missense_Mutation p.H362Y 0.37 tolerated(0.13) probably_damaging(0.998) TCGA-GN-A4U4-06 5 64748639 64748639 C T ADAMTS6 Silent p.V246V 0.35 TCGA-GN-A4U4-06 5 74066523 74066523 G A NSA2 Missense_Mutation p.R137Q 0.43 tolerated(0.14) benign(0.003) TCGA-GN-A4U4-06 5 76259219 76259219 G A CRHBP Missense_Mutation p.G249R 0.33 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U4-06 5 79363671 79363671 G A THBS4 Intron 0.77 TCGA-GN-A4U4-06 5 80256719 80256719 C T RASGRF2 Silent p.F54F 0.34 TCGA-GN-A4U4-06 5 89923388 89923388 C T GPR98 Nonsense_Mutation p.Q345* 0.33 TCGA-GN-A4U4-06 5 89949267 89949267 C T GPR98 Silent p.F1292F 0.35 TCGA-GN-A4U4-06 5 90106260 90106260 G A GPR98 Silent p.G5061G 0.21 TCGA-GN-A4U4-06 5 94030913 94030913 C T ANKRD32 Missense_Mutation p.L1025F 0.40 deleterious(0.02) probably_damaging(0.974) TCGA-GN-A4U4-06 5 94728527 94728527 A G FAM81B Missense_Mutation p.T52A 0.30 tolerated_low_confidence(0.06) benign(0.156) TCGA-GN-A4U4-06 5 95226827 95226827 G A ELL2 Missense_Mutation p.P581S 0.38 deleterious(0.02) probably_damaging(0.927) TCGA-GN-A4U4-06 6 10874719 10874719 C T GCM2 Missense_Mutation p.E344K 0.22 tolerated(0.07) benign(0.421) TCGA-GN-A4U4-06 6 117609901 117609901 C T ROS1 Silent p.T2266T 0.51 TCGA-GN-A4U4-06 6 12120836 12120836 C T HIVEP1 Nonsense_Mutation p.Q270* 0.63 TCGA-GN-A4U4-06 6 132031200 132031200 G A CTAGE9 Missense_Mutation p.H320Y 0.45 tolerated(1) benign(0.005) TCGA-GN-A4U4-06 6 136599500 136599500 G A BCLAF1 Silent p.P173P 0.24 TCGA-GN-A4U4-06 6 151939346 151939346 C T CCDC170 3'UTR 0.53 TCGA-GN-A4U4-06 6 155451079 155451079 G A TIAM2 Missense_Mutation p.S241N 0.55 deleterious(0) possibly_damaging(0.682) TCGA-GN-A4U4-06 6 159205710 159205710 G A EZR Nonsense_Mutation p.Q173* 0.62 TCGA-GN-A4U4-06 6 160999567 160999567 G A LPA Missense_Mutation p.P1487S 0.69 deleterious_low_confidence(0.04) benign(0.16) TCGA-GN-A4U4-06 6 17551692 17551692 C T CAP2 Intron 0.28 TCGA-GN-A4U4-06 6 22287760 22287760 C T PRL Silent p.Q185Q 0.25 TCGA-GN-A4U4-06 6 24475350 24475350 G A GPLD1 Missense_Mutation p.A147V 0.51 tolerated(0.11) possibly_damaging(0.751) TCGA-GN-A4U4-06 6 27216652 27216652 G A PRSS16 Nonsense_Mutation p.W88* 0.48 TCGA-GN-A4U4-06 6 27420104 27420104 G A ZNF184 Missense_Mutation p.H412Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 6 27925140 27925140 G A OR2B6 Missense_Mutation p.G41D 0.25 deleterious(0) probably_damaging(0.93) TCGA-GN-A4U4-06 6 28543603 28543603 C T SCAND3 Silent p.G293G 0.24 TCGA-GN-A4U4-06 6 29012930 29012930 G A OR2W1 Missense_Mutation p.S8F 0.26 tolerated(0.13) benign(0.006) TCGA-GN-A4U4-06 6 29911150 29911150 T C HLA-A Missense_Mutation p.L150P 0.58 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-GN-A4U4-06 6 31557874 31557874 G A NCR3 Missense_Mutation p.P25S 0.52 tolerated(0.11) benign(0.285) TCGA-GN-A4U4-06 6 31557875 31557875 G A NCR3 Silent p.P24P 0.50 TCGA-GN-A4U4-06 6 31747282 31747282 G A VARS Missense_Mutation p.A1107V 0.69 tolerated(0.27) benign(0.14) TCGA-GN-A4U4-06 6 38697707 38697707 A G DNAH8 Intron 0.62 TCGA-GN-A4U4-06 6 38905946 38905946 C T DNAH8 Silent p.I3703I 0.62 TCGA-GN-A4U4-06 6 39284091 39284091 C A KCNK16 Intron 0.58 TCGA-GN-A4U4-06 6 41703931 41703931 C T TFEB 5'Flank 0.58 TCGA-GN-A4U4-06 6 43475632 43475632 C T LRRC73 Missense_Mutation p.V197M 0.18 tolerated(0.17) benign(0.353) TCGA-GN-A4U4-06 6 43514469 43514469 G A XPO5 Silent p.S727S 0.65 TCGA-GN-A4U4-06 6 46190825 46190825 G A RCAN2 3'UTR 0.53 TCGA-GN-A4U4-06 6 55216371 55216371 G A GFRAL Missense_Mutation p.E231K 0.63 deleterious(0.04) possibly_damaging(0.845) TCGA-GN-A4U4-06 6 55406938 55406938 C T HMGCLL1 Missense_Mutation p.E67K 0.62 tolerated_low_confidence(0.19) benign(0.005) TCGA-GN-A4U4-06 6 56434752 56434752 A T DST Missense_Mutation p.S1971T 0.59 possibly_damaging(0.57) TCGA-GN-A4U4-06 6 63990388 63990388 G A LGSN Silent p.S356S 0.58 TCGA-GN-A4U4-06 6 73787560 73787560 G A KCNQ5 Missense_Mutation p.D290N 0.72 deleterious(0) possibly_damaging(0.728) TCGA-GN-A4U4-06 6 76744409 76744409 C T IMPG1 Missense_Mutation p.E133K 0.65 deleterious(0.03) possibly_damaging(0.907) TCGA-GN-A4U4-06 6 96034328 96034328 C T MANEA Missense_Mutation p.R5W 0.66 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GN-A4U4-06 7 100203371 100203371 T C PCOLCE Missense_Mutation p.F221L 0.54 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 7 103018164 103018164 C T SLC26A5 Missense_Mutation p.S623N 0.36 tolerated(0.4) benign(0.003) TCGA-GN-A4U4-06 7 112112351 112112351 C T IFRD1 Silent p.T373T 0.33 TCGA-GN-A4U4-06 7 117067454 117067454 C T ASZ1 Missense_Mutation p.E21K 0.36 tolerated(0.09) benign(0.185) TCGA-GN-A4U4-06 7 120387881 120387881 G A KCND2 Missense_Mutation p.G621E 0.28 tolerated_low_confidence(0.75) benign(0.007) TCGA-GN-A4U4-06 7 122130171 122130171 G A CADPS2 Missense_Mutation p.P606S 0.42 tolerated(0.92) benign(0.002) TCGA-GN-A4U4-06 7 123593968 123593968 C T SPAM1 Missense_Mutation p.P115L 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 7 127668930 127668930 G A LRRC4 Silent p.S588S 0.39 TCGA-GN-A4U4-06 7 128452344 128452344 C T CCDC136 Missense_Mutation p.P840L 0.27 tolerated_low_confidence(0.33) benign(0.017) TCGA-GN-A4U4-06 7 129832639 129832639 G A TMEM209 Missense_Mutation p.P200S 0.27 tolerated(1) benign(0) TCGA-GN-A4U4-06 7 140221789 140221789 C T DENND2A Missense_Mutation p.R926K 0.36 tolerated(0.06) benign(0.05) TCGA-GN-A4U4-06 7 141896588 141896588 C T RP11-1220K2.2 Missense_Mutation p.S1535F 0.25 probably_damaging(0.998) TCGA-GN-A4U4-06 7 142149136 142149136 G A TRBV5-5 Silent p.I45I 0.39 TCGA-GN-A4U4-06 7 142180968 142180968 G A TRBV6-5 5'UTR 0.23 TCGA-GN-A4U4-06 7 142428720 142428720 C T TRBV28 Missense_Mutation p.S27L 0.40 deleterious(0.01) benign(0.012) TCGA-GN-A4U4-06 7 142920020 142920020 C T TAS2R40 Silent p.I283I 0.32 TCGA-GN-A4U4-06 7 143091909 143091909 C T EPHA1 Missense_Mutation p.E782K 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A4U4-06 7 143453312 143453312 C T CTAGE6 Silent p.R480R 0.11 TCGA-GN-A4U4-06 7 143657174 143657174 G A OR2F1 Silent p.V37V 0.41 TCGA-GN-A4U4-06 7 143792629 143792629 G A OR2A12 Silent p.L143L 0.41 TCGA-GN-A4U4-06 7 143792731 143792731 C T OR2A12 Silent p.F177F 0.39 TCGA-GN-A4U4-06 7 144062425 144062425 C T ARHGEF5 Missense_Mutation p.P888L 0.15 tolerated(0.09) benign(0.008) TCGA-GN-A4U4-06 7 149515803 149515803 C T SSPO RNA 0.43 TCGA-GN-A4U4-06 7 15584536 15584536 C T AGMO Silent p.R90R 0.31 TCGA-GN-A4U4-06 7 21628966 21628966 C T DNAH11 Missense_Mutation p.P705L 0.33 probably_damaging(0.978) TCGA-GN-A4U4-06 7 21788257 21788257 G A DNAH11 Missense_Mutation p.G2864E 0.38 probably_damaging(0.999) TCGA-GN-A4U4-06 7 23811825 23811825 C T STK31 Silent p.S631S 0.36 TCGA-GN-A4U4-06 7 2583262 2583262 G T BRAT1 Silent p.A255A 0.29 TCGA-GN-A4U4-06 7 26765109 26765109 G A SKAP2 Missense_Mutation p.P245L 0.30 tolerated(0.08) benign(0.03) TCGA-GN-A4U4-06 7 2962884 2962884 C T CARD11 Missense_Mutation p.S675N 0.39 tolerated(0.78) benign(0) TCGA-GN-A4U4-06 7 30795057 30795057 G A INMT Missense_Mutation p.E128K 0.26 deleterious(0) possibly_damaging(0.713) TCGA-GN-A4U4-06 7 31594485 31594485 G A CCDC129 Missense_Mutation p.E102K 0.62 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U4-06 7 39247140 39247140 G A POU6F2 Silent p.A144A 0.32 TCGA-GN-A4U4-06 7 42085041 42085041 G A GLI3 Silent p.P256P 0.35 TCGA-GN-A4U4-06 7 42085042 42085042 G A GLI3 Missense_Mutation p.P256L 0.34 tolerated(0.3) probably_damaging(0.999) TCGA-GN-A4U4-06 7 44147091 44147091 G A AEBP1 Missense_Mutation p.A217T 0.29 tolerated_low_confidence(0.42) benign(0.026) TCGA-GN-A4U4-06 7 47408146 47408146 G A TNS3 Silent p.I699I 0.38 TCGA-GN-A4U4-06 7 48494828 48494828 C T ABCA13 Missense_Mutation p.P4254S 0.47 probably_damaging(0.965) TCGA-GN-A4U4-06 7 4856063 4856063 A C RADIL Missense_Mutation p.C588G 0.20 tolerated(0.3) benign(0.062) TCGA-GN-A4U4-06 7 50467675 50467675 G A IKZF1 Missense_Mutation p.E262K 0.36 deleterious(0) possibly_damaging(0.738) TCGA-GN-A4U4-06 7 50611755 50611755 C T DDC Missense_Mutation p.G10E 0.34 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U4-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.26 TCGA-GN-A4U4-06 7 62752132 62752132 G A ZNF733P RNA 0.35 TCGA-GN-A4U4-06 7 6776901 6776901 C T PMS2CL RNA 0.39 TCGA-GN-A4U4-06 7 769331 769331 C T HEATR2 Silent p.I209I 0.25 TCGA-GN-A4U4-06 7 813731 813731 C T HEATR2 Missense_Mutation p.P660S 0.36 deleterious(0.02) probably_damaging(0.927) TCGA-GN-A4U4-06 7 82545982 82545982 C T PCLO Missense_Mutation p.E3774K 0.37 unknown(0) TCGA-GN-A4U4-06 7 82585826 82585826 T G PCLO Missense_Mutation p.K1481N 0.37 unknown(0) TCGA-GN-A4U4-06 7 84697540 84697540 C T SEMA3D Missense_Mutation p.D186N 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 7 93065372 93065372 G A CALCR Silent p.I381I 0.32 TCGA-GN-A4U4-06 7 99564731 99564731 G A AZGP1 Silent p.S264S 0.26 TCGA-GN-A4U4-06 7 99564732 99564732 G A AZGP1 Missense_Mutation p.S264F 0.27 tolerated(0.06) possibly_damaging(0.805) TCGA-GN-A4U4-06 8 105459626 105459626 C T DPYS Missense_Mutation p.E177K 0.38 tolerated(0.12) benign(0.003) TCGA-GN-A4U4-06 8 110505956 110505956 C T PKHD1L1 Missense_Mutation p.R3435C 0.48 deleterious(0) probably_damaging(0.97) TCGA-GN-A4U4-06 8 110986192 110986192 G A KCNV1 Silent p.I142I 0.57 TCGA-GN-A4U4-06 8 113599432 113599432 C T CSMD3 Missense_Mutation p.G1250R 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A4U4-06 8 130765052 130765052 C T GSDMC Missense_Mutation p.E246K 0.49 tolerated(0.9) benign(0.002) TCGA-GN-A4U4-06 8 133053349 133053349 G A OC90 Silent p.L133L 0.24 TCGA-GN-A4U4-06 8 133816978 133816978 G C PHF20L1 Missense_Mutation p.K280N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U4-06 8 133978827 133978827 C T TG Silent p.S1857S 0.22 TCGA-GN-A4U4-06 8 139163629 139163629 A G FAM135B Missense_Mutation p.V1030A 0.24 deleterious(0.01) benign(0.13) TCGA-GN-A4U4-06 8 139164494 139164494 C T FAM135B Missense_Mutation p.G742S 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-GN-A4U4-06 8 144943558 144943558 G A EPPK1 Silent p.F1288F 0.29 TCGA-GN-A4U4-06 8 145638191 145638191 G A SLC39A4 Silent p.I589I 0.24 TCGA-GN-A4U4-06 8 21959747 21959747 C T FAM160B2 Missense_Mutation p.P638L 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 8 21959748 21959748 C T FAM160B2 Silent p.P638P 0.37 TCGA-GN-A4U4-06 8 24193193 24193193 G A ADAM28 Intron 0.42 TCGA-GN-A4U4-06 8 27319175 27319175 G A CHRNA2 Silent p.L521L 0.35 TCGA-GN-A4U4-06 8 2830745 2830745 C T CSMD1 Silent p.K2939K 0.39 TCGA-GN-A4U4-06 8 3351157 3351157 G A CSMD1 Missense_Mutation p.S479L 0.43 benign(0.102) TCGA-GN-A4U4-06 8 37553627 37553627 C T ZNF703 Nonsense_Mutation p.Q44* 0.48 TCGA-GN-A4U4-06 8 39785516 39785516 C T IDO1 Silent p.L342L 0.30 TCGA-GN-A4U4-06 8 39873047 39873047 G A IDO2 Missense_Mutation p.G397R 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 8 40532393 40532393 G A ZMAT4 Missense_Mutation p.S136F 0.41 deleterious(0) benign(0.372) TCGA-GN-A4U4-06 8 49987797 49987797 G A C8orf22 3'UTR 0.36 TCGA-GN-A4U4-06 8 55533728 55533728 G A RP1 Missense_Mutation p.D68N 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 8 55538522 55538522 G A RP1 Missense_Mutation p.G694R 0.33 tolerated(0.52) benign(0.027) TCGA-GN-A4U4-06 8 55538746 55538746 C T RP1 Silent p.S768S 0.39 TCGA-GN-A4U4-06 8 55539350 55539350 G A RP1 Missense_Mutation p.E970K 0.42 tolerated(0.25) benign(0.025) TCGA-GN-A4U4-06 8 55541990 55541990 C T RP1 Missense_Mutation p.H1850Y 0.34 tolerated(0.13) possibly_damaging(0.642) TCGA-GN-A4U4-06 8 55542280 55542280 C T RP1 Silent p.F1946F 0.36 TCGA-GN-A4U4-06 8 57358297 57358297 G A PENK Intron 0.38 TCGA-GN-A4U4-06 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.40 tolerated(0.3) benign(0) TCGA-GN-A4U4-06 8 72127916 72127916 C T EYA1 Missense_Mutation p.E470K 0.44 deleterious(0.03) benign(0.147) TCGA-GN-A4U4-06 8 73480454 73480454 G A KCNB2 Missense_Mutation p.R162Q 0.26 deleterious(0.01) benign(0.043) TCGA-GN-A4U4-06 8 77618097 77618097 G T ZFHX4 Missense_Mutation p.G592C 0.44 probably_damaging(0.984) TCGA-GN-A4U4-06 8 77766382 77766382 C T ZFHX4 Missense_Mutation p.P2409S 0.33 benign(0.101) TCGA-GN-A4U4-06 8 77775547 77775547 G A ZFHX4 Silent p.V3199V 0.38 TCGA-GN-A4U4-06 8 80567234 80567234 G A STMN2 Missense_Mutation p.M139I 0.42 deleterious(0) probably_damaging(0.927) TCGA-GN-A4U4-06 8 99142282 99142282 G A POP1 Missense_Mutation p.R188Q 0.46 tolerated(0.29) benign(0.087) TCGA-GN-A4U4-06 8 99142284 99142284 A G POP1 Missense_Mutation p.T189A 0.45 tolerated(0.12) benign(0.044) TCGA-GN-A4U4-06 9 105768168 105768168 A G CYLC2 3'UTR 0.40 TCGA-GN-A4U4-06 9 106882313 106882313 C T SMC2 Nonsense_Mutation p.R668* 0.35 TCGA-GN-A4U4-06 9 107367267 107367267 G A OR13C2 Silent p.I214I 0.33 TCGA-GN-A4U4-06 9 113170211 113170211 C T SVEP1 Missense_Mutation p.D2557N 0.35 benign(0.012) TCGA-GN-A4U4-06 9 113431136 113431136 C T MUSK 5'UTR 0.39 TCGA-GN-A4U4-06 9 115925232 115925232 G A SLC31A2 3'UTR 0.36 TCGA-GN-A4U4-06 9 119187979 119187979 G A ASTN2 3'UTR 0.29 TCGA-GN-A4U4-06 9 121929227 121929227 G A BRINP1 3'UTR 0.56 TCGA-GN-A4U4-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.36 TCGA-GN-A4U4-06 9 122004448 122004448 C T BRINP1 Silent p.R152R 0.28 TCGA-GN-A4U4-06 9 125281920 125281920 C T OR1J4 Silent p.S167S 0.29 TCGA-GN-A4U4-06 9 130493688 130493688 G A TTC16 3'UTR 0.31 TCGA-GN-A4U4-06 9 135521432 135521432 G A DDX31 Silent p.V515V 0.30 TCGA-GN-A4U4-06 9 136260755 136260755 C T C9orf96 Missense_Mutation p.S244F 0.29 deleterious(0) probably_damaging(0.961) TCGA-GN-A4U4-06 9 137013422 137013422 C T WDR5 Missense_Mutation p.R181C 0.32 tolerated(0.11) benign(0.016) TCGA-GN-A4U4-06 9 137803047 137803047 G A FCN1 Missense_Mutation p.S222L 0.38 deleterious(0) probably_damaging(0.972) TCGA-GN-A4U4-06 9 138377800 138377800 A T PPP1R26 Missense_Mutation p.M482L 0.39 tolerated(0.14) benign(0.002) TCGA-GN-A4U4-06 9 138586222 138586222 G A SOHLH1 Intron 0.34 TCGA-GN-A4U4-06 9 138651569 138651569 C T KCNT1 Missense_Mutation p.S300F 0.36 deleterious(0) possibly_damaging(0.722) TCGA-GN-A4U4-06 9 139847361 139847361 C T LCN12 Silent p.F44F 0.31 TCGA-GN-A4U4-06 9 140057149 140057149 G A GRIN1 Silent p.L678L 0.17 TCGA-GN-A4U4-06 9 140082507 140082507 G A ANAPC2 Missense_Mutation p.R56W 0.33 deleterious(0.01) possibly_damaging(0.613) TCGA-GN-A4U4-06 9 140710440 140710440 C T EHMT1 Silent p.P1100P 0.35 TCGA-GN-A4U4-06 9 14769802 14769802 T A FREM1 Silent p.I1708I 0.72 TCGA-GN-A4U4-06 9 37349404 37349404 C T ZCCHC7 Silent p.A346A 0.38 TCGA-GN-A4U4-06 9 37592617 37592617 C T TOMM5 5'Flank 0.29 TCGA-GN-A4U4-06 9 37740968 37740968 G A FRMPD1 Intron 0.41 TCGA-GN-A4U4-06 9 39085878 39085878 G A CNTNAP3 Intron 0.38 TCGA-GN-A4U4-06 9 39103859 39103859 G A CNTNAP3 Silent p.F806F 0.33 TCGA-GN-A4U4-06 9 72746489 72746489 G A MAMDC2 Missense_Mutation p.D319N 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A4U4-06 9 77353396 77353396 C T TRPM6 Silent p.E1901E 0.38 TCGA-GN-A4U4-06 9 84533292 84533292 C T SPATA31D5P RNA 0.30 TCGA-GN-A4U4-06 9 84533293 84533293 C T SPATA31D5P RNA 0.30 TCGA-GN-A4U4-06 9 84562916 84562916 C T RP11-383M4.6 Intron 0.36 TCGA-GN-A4U4-06 9 91628405 91628405 C T SHC3 Missense_Mutation p.G581E 0.38 tolerated(0.39) probably_damaging(0.991) TCGA-GN-A4U4-06 9 95099878 95099878 A G CENPP Silent p.T115T 0.40 TCGA-GN-A4U4-06 9 96291710 96291710 C T FAM120A Missense_Mutation p.P528S 0.21 tolerated(0.23) benign(0.157) TCGA-GN-A4U4-06 9 99265908 99265908 G A CDC14B 3'UTR 0.19 TCGA-GN-A4U4-06 X 109931888 109931888 G A CHRDL1 Missense_Mutation p.P308S 0.73 deleterious(0.01) possibly_damaging(0.844) TCGA-GN-A4U4-06 X 111025282 111025282 A T TRPC5 Missense_Mutation p.F661I 0.77 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U4-06 X 117043467 117043467 C T KLHL13 Missense_Mutation p.G391E 0.82 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A4U4-06 X 119602967 119602967 C - LAMP2 Frame_Shift_Del p.V20Sfs*14 0.49 TCGA-GN-A4U4-06 X 128926407 128926407 C T SASH3 Silent p.T182T 0.71 TCGA-GN-A4U4-06 X 130410928 130410928 C T IGSF1 Missense_Mutation p.E870K 0.74 tolerated(0.09) probably_damaging(0.998) TCGA-GN-A4U4-06 X 140993488 140993488 C T MAGEC1 Nonsense_Mutation p.Q100* 0.73 TCGA-GN-A4U4-06 X 140995048 140995048 G A MAGEC1 Missense_Mutation p.E620K 0.75 deleterious_low_confidence(0) benign(0.006) TCGA-GN-A4U4-06 X 151900533 151900533 C T MAGEA12 Missense_Mutation p.E90K 0.73 tolerated(0.1) benign(0.064) TCGA-GN-A4U4-06 X 153578163 153578163 G A FLNA Missense_Mutation p.P2469L 0.70 deleterious(0) probably_damaging(0.917) TCGA-GN-A4U4-06 X 153578164 153578164 G A FLNA Missense_Mutation p.P2469S 0.70 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U4-06 X 155127884 155127884 G A VAMP7 Missense_Mutation p.E105K 0.38 deleterious(0) probably_damaging(0.975) TCGA-GN-A4U4-06 X 26211990 26211990 C T MAGEB6 Silent p.L9L 0.70 TCGA-GN-A4U4-06 X 3242264 3242264 C T MXRA5 Missense_Mutation p.D488N 0.76 deleterious(0.03) benign(0.072) TCGA-GN-A4U4-06 X 63412632 63412632 G A AMER1 Missense_Mutation p.H179Y 0.84 deleterious(0.03) benign(0.182) TCGA-GN-A4U4-06 X 64722308 64722308 G A ZC3H12B Missense_Mutation p.R577Q 0.88 tolerated(0.34) benign(0.033) TCGA-GN-A4U4-06 X 73961368 73961368 G A KIAA2022 Silent p.S1008S 0.68 TCGA-GN-A4U4-06 X 75004218 75004218 C T MAGEE2 Silent p.R223R 0.78 TCGA-GN-A4U4-06 X 7811920 7811920 G A VCX Missense_Mutation p.E162K 0.39 deleterious(0.02) unknown(0) TCGA-GN-A4U4-06 X 78616940 78616940 C T ITM2A Missense_Mutation p.E197K 0.82 tolerated(0.05) probably_damaging(0.998) TCGA-GN-A4U4-06 X 79980482 79980482 A T BRWD3 Missense_Mutation p.F491I 0.72 tolerated(0.48) benign(0.055) TCGA-GN-A4U4-06 X 92926918 92926918 C T NAP1L3 Silent p.L462L 0.83 TCGA-GN-A4U4-06 Y 22737761 22737761 C T EIF1AY Missense_Mutation p.P2S 0.92 deleterious(0.01) unknown(0) TCGA-GN-A4U5-01 10 105147987 105147987 G A TAF5 3'UTR 0.21 TCGA-GN-A4U5-01 10 134158066 134158066 C T LRRC27 Silent p.L155L 0.30 TCGA-GN-A4U5-01 10 14816323 14816323 C T FAM107B Missense_Mutation p.D114N 0.28 tolerated_low_confidence(0.44) benign(0.034) TCGA-GN-A4U5-01 10 21414830 21414830 C T C10orf113 Silent p.G130G 0.28 TCGA-GN-A4U5-01 10 26822440 26822440 G A APBB1IP Missense_Mutation p.E296K 0.19 deleterious(0) possibly_damaging(0.893) TCGA-GN-A4U5-01 10 68040338 68040338 C T CTNNA3 Missense_Mutation p.A592T 0.17 tolerated(0.06) unknown(0) TCGA-GN-A4U5-01 10 75198161 75198161 G A PPP3CB Missense_Mutation p.P473S 0.28 deleterious_low_confidence(0.03) benign(0.206) TCGA-GN-A4U5-01 10 89720672 89720673 - TAA PTEN In_Frame_Ins p.V275_N276insI 0.21 TCGA-GN-A4U5-01 10 96818254 96818254 G A CYP2C8 Silent p.F219F 0.26 TCGA-GN-A4U5-01 11 11985849 11985849 G A DKK3 3'UTR 0.14 TCGA-GN-A4U5-01 11 11985850 11985850 G A DKK3 3'UTR 0.14 TCGA-GN-A4U5-01 11 120827513 120827513 C A GRIK4 Missense_Mutation p.S575R 0.25 deleterious(0) possibly_damaging(0.628) TCGA-GN-A4U5-01 11 20805243 20805243 C T NELL1 Missense_Mutation p.H68Y 0.14 tolerated(0.09) benign(0.015) TCGA-GN-A4U5-01 11 26695059 26695059 C T SLC5A12 Missense_Mutation p.D533N 0.28 tolerated(0.19) benign(0.006) TCGA-GN-A4U5-01 11 31123807 31123807 G A DCDC1 Missense_Mutation p.P634S 0.27 deleterious(0.05) benign(0.1) TCGA-GN-A4U5-01 11 4843356 4843356 G A OR51F2 Silent p.E247E 0.26 TCGA-GN-A4U5-01 11 5255304 5255304 G A HBD Missense_Mutation p.H78Y 0.19 deleterious(0.03) possibly_damaging(0.604) TCGA-GN-A4U5-01 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.18 TCGA-GN-A4U5-01 11 5878224 5878224 C T OR52E8 Missense_Mutation p.E237K 0.29 deleterious(0.03) benign(0.103) TCGA-GN-A4U5-01 11 59271930 59271930 G A OR4D11 Missense_Mutation p.M294I 0.27 deleterious(0.03) benign(0.008) TCGA-GN-A4U5-01 11 60714198 60714198 C T SLC15A3 Silent p.A218A 0.21 TCGA-GN-A4U5-01 11 63486825 63486825 C T RTN3 Missense_Mutation p.S284F 0.20 deleterious(0.02) possibly_damaging(0.646) TCGA-GN-A4U5-01 11 67047303 67047310 CCCTTAGC - ADRBK1 Splice_Site p.X148_splice 0.15 TCGA-GN-A4U5-01 11 67395445 67395445 G A NUDT8 Missense_Mutation p.S228F 0.14 deleterious_low_confidence(0) benign(0.193) TCGA-GN-A4U5-01 11 67412608 67412608 G A ACY3 Missense_Mutation p.P181L 0.24 deleterious(0) probably_damaging(0.994) TCGA-GN-A4U5-01 11 6815838 6815838 C T OR6A2 3'UTR 0.23 TCGA-GN-A4U5-01 11 71277022 71277022 C T KRTAP5-10 Missense_Mutation p.S130F 0.20 unknown(0) TCGA-GN-A4U5-01 11 71716279 71716279 C T NUMA1 Silent p.R1943R 0.24 TCGA-GN-A4U5-01 11 8120374 8120374 C T TUB Silent p.S411S 0.23 TCGA-GN-A4U5-01 11 8496518 8496518 C T STK33 5'UTR 0.25 TCGA-GN-A4U5-01 11 88241878 88241878 T G GRM5 Missense_Mutation p.D1174A 0.20 tolerated_low_confidence(1) benign(0.003) TCGA-GN-A4U5-01 11 88241879 88241879 C T GRM5 Missense_Mutation p.D1174N 0.21 tolerated_low_confidence(0.48) benign(0.231) TCGA-GN-A4U5-01 11 99941185 99941185 G A CNTN5 Missense_Mutation p.D398N 0.37 tolerated(0.26) benign(0.042) TCGA-GN-A4U5-01 12 100904796 100904796 C T NR1H4 Missense_Mutation p.P117L 0.27 deleterious(0.02) benign(0.146) TCGA-GN-A4U5-01 12 109181953 109181953 G A SSH1 Silent p.F987F 0.21 TCGA-GN-A4U5-01 12 110956697 110956697 G A RAD9B Missense_Mutation p.E241K 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 12 112153735 112153735 C T ACAD10 Missense_Mutation p.P352S 0.28 deleterious(0.02) probably_damaging(0.973) TCGA-GN-A4U5-01 12 114380195 114380195 G A RBM19 Silent p.T557T 0.27 TCGA-GN-A4U5-01 12 122497089 122497089 G A BCL7A 3'UTR 0.21 TCGA-GN-A4U5-01 12 124824657 124824657 G A NCOR2 Missense_Mutation p.S1861F 0.18 probably_damaging(0.996) TCGA-GN-A4U5-01 12 130648909 130648909 C T FZD10 Silent p.I474I 0.24 TCGA-GN-A4U5-01 12 13722795 13722795 C T GRIN2B Silent p.V776V 0.26 TCGA-GN-A4U5-01 12 14927278 14927278 T A H2AFJ 5'UTR 0.29 TCGA-GN-A4U5-01 12 14976231 14976231 C T C12orf60 Missense_Mutation p.P121L 0.21 deleterious(0.03) benign(0.399) TCGA-GN-A4U5-01 12 21242975 21242975 G A SLCO1B7 Missense_Mutation p.D620N 0.28 tolerated(0.81) benign(0.011) TCGA-GN-A4U5-01 12 32793474 32793474 C T FGD4 3'UTR 0.16 TCGA-GN-A4U5-01 12 34175405 34175405 C T ALG10 5'UTR 0.25 TCGA-GN-A4U5-01 12 45097602 45097602 C T NELL2 Missense_Mutation p.E459K 0.17 deleterious(0.03) benign(0.01) TCGA-GN-A4U5-01 12 49742782 49742782 C T DNAJC22 Silent p.L43L 0.21 TCGA-GN-A4U5-01 12 50475346 50475346 C T ASIC1 Missense_Mutation p.R547W 0.17 tolerated(0.06) probably_damaging(0.933) TCGA-GN-A4U5-01 12 51102322 51102322 C T DIP2B Nonsense_Mutation p.Q876* 0.22 TCGA-GN-A4U5-01 12 54798660 54798660 G A ITGA5 Missense_Mutation p.P415L 0.28 deleterious(0) possibly_damaging(0.737) TCGA-GN-A4U5-01 12 55523663 55523663 C T OR9K2 Silent p.F37F 0.23 TCGA-GN-A4U5-01 12 57112121 57112121 G A NACA Intron 0.24 TCGA-GN-A4U5-01 12 58009015 58009015 C T ARHGEF25 Intron 0.33 TCGA-GN-A4U5-01 12 6925345 6925345 G A CD4 Missense_Mutation p.R244K 0.23 tolerated(1) benign(0.002) TCGA-GN-A4U5-01 12 9345221 9345221 G A PZP Silent p.L457L 0.23 TCGA-GN-A4U5-01 13 25281310 25281310 C T ATP12A Silent p.I779I 0.24 TCGA-GN-A4U5-01 13 29599727 29599727 G A MTUS2 Missense_Mutation p.E308K 0.16 deleterious(0) possibly_damaging(0.646) TCGA-GN-A4U5-01 13 42249362 42249362 G A VWA8 Silent p.I1466I 0.23 TCGA-GN-A4U5-01 13 77743797 77743797 G A MYCBP2 Silent p.L1911L 0.26 TCGA-GN-A4U5-01 14 106307504 106307504 C T IGHD Missense_Mutation p.D179N 0.28 tolerated(0.67) benign(0.254) TCGA-GN-A4U5-01 14 107083361 107083361 G A IGHV4-59 Silent p.S81S 0.18 TCGA-GN-A4U5-01 14 20404095 20404095 G A OR4K1 Silent p.K90K 0.17 TCGA-GN-A4U5-01 14 20692286 20692286 C T OR11H6 Missense_Mutation p.R140W 0.18 deleterious(0.02) benign(0.081) TCGA-GN-A4U5-01 14 20940607 20940607 G A PNP Missense_Mutation p.G51D 0.15 tolerated(0.19) benign(0.001) TCGA-GN-A4U5-01 14 22102537 22102537 C T OR10G2 Nonsense_Mutation p.W154* 0.17 TCGA-GN-A4U5-01 14 23511578 23511578 C T PSMB11 Silent p.H48H 0.17 TCGA-GN-A4U5-01 14 24658920 24658920 G A TM9SF1 Silent p.L508L 0.23 TCGA-GN-A4U5-01 14 42356124 42356124 G A LRFN5 Missense_Mutation p.R99Q 0.26 tolerated(0.13) possibly_damaging(0.473) TCGA-GN-A4U5-01 14 95053972 95053972 C T SERPINA5 Silent p.I91I 0.17 TCGA-GN-A4U5-01 14 97313612 97313612 C T VRK1 Missense_Mutation p.T102I 0.18 tolerated(0.17) benign(0.123) TCGA-GN-A4U5-01 14 99642020 99642020 C G BCL11B Missense_Mutation p.G385R 0.14 tolerated(0.48) possibly_damaging(0.714) TCGA-GN-A4U5-01 15 20657730 20657730 G A HERC2P3 RNA 0.14 TCGA-GN-A4U5-01 15 40398293 40398293 C T BMF Splice_Site 0.16 TCGA-GN-A4U5-01 15 43653963 43653963 C A ZSCAN29 Nonsense_Mutation p.E623* 0.16 TCGA-GN-A4U5-01 15 57925900 57925900 G A GCOM1 Silent p.R298R 0.17 TCGA-GN-A4U5-01 15 81229171 81229171 C T KIAA1199 Missense_Mutation p.H1056Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U5-01 15 93588195 93588195 A T RGMA 3'UTR 0.25 TCGA-GN-A4U5-01 15 93588196 93588196 C T RGMA 3'UTR 0.25 TCGA-GN-A4U5-01 16 1257821 1257821 G A CACNA1H Missense_Mutation p.E1039K 0.22 deleterious(0.01) benign(0.269) TCGA-GN-A4U5-01 16 19051703 19051703 C T TMC7 Silent p.I424I 0.22 TCGA-GN-A4U5-01 16 20471613 20471613 G T ACSM2A Missense_Mutation p.K59N 0.19 deleterious(0.03) possibly_damaging(0.766) TCGA-GN-A4U5-01 16 21416129 21416129 G A NPIPB3 Silent p.P193P 0.11 TCGA-GN-A4U5-01 16 21416130 21416130 G A NPIPB3 Missense_Mutation p.P193L 0.11 probably_damaging(0.996) TCGA-GN-A4U5-01 16 27231911 27231911 G A KDM8 Missense_Mutation p.E409K 0.23 tolerated(0.25) benign(0.008) TCGA-GN-A4U5-01 16 29827930 29827930 C T PAGR1 Silent p.L28L 0.14 TCGA-GN-A4U5-01 16 3304514 3304514 C T MEFV Missense_Mutation p.G185E 0.23 deleterious(0.03) benign(0.114) TCGA-GN-A4U5-01 16 3304515 3304515 C T MEFV Missense_Mutation p.G185R 0.22 tolerated(1) benign(0.003) TCGA-GN-A4U5-01 16 49671485 49671485 G A ZNF423 Silent p.F526F 0.22 TCGA-GN-A4U5-01 16 57550219 57550219 G A CCDC102A Nonsense_Mutation p.Q469* 0.26 TCGA-GN-A4U5-01 16 57918023 57918023 G A CNGB1 3'UTR 0.25 TCGA-GN-A4U5-01 16 67270559 67270559 G A FHOD1 Missense_Mutation p.P407L 0.30 deleterious(0.02) benign(0.002) TCGA-GN-A4U5-01 16 68406009 68406009 G A SMPD3 Missense_Mutation p.P26S 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 16 70501297 70501297 C T FUK Missense_Mutation p.R169W 0.34 deleterious(0.01) possibly_damaging(0.773) TCGA-GN-A4U5-01 16 71674836 71674836 G A MARVELD3 Missense_Mutation p.R380H 0.23 deleterious(0) probably_damaging(0.985) TCGA-GN-A4U5-01 16 84520283 84520283 G A TLDC1 Silent p.F304F 0.24 TCGA-GN-A4U5-01 17 10436610 10436610 C T MYH2 Silent p.V811V 0.20 TCGA-GN-A4U5-01 17 10451089 10451089 C T MYH2 Missense_Mutation p.G50E 0.21 deleterious(0) possibly_damaging(0.764) TCGA-GN-A4U5-01 17 17722528 17722528 G A SREBF1 Silent p.T319T 0.16 TCGA-GN-A4U5-01 17 17722529 17722529 G A SREBF1 Missense_Mutation p.T319I 0.17 deleterious(0) probably_damaging(0.927) TCGA-GN-A4U5-01 17 2282885 2282885 C T SGSM2 3'UTR 0.30 TCGA-GN-A4U5-01 17 2282886 2282886 C T SGSM2 3'UTR 0.32 TCGA-GN-A4U5-01 17 25621442 25621442 G A WSB1 Silent p.R7R 0.13 TCGA-GN-A4U5-01 17 25621443 25621443 G A WSB1 Missense_Mutation p.V8I 0.13 tolerated_low_confidence(0.25) benign(0.014) TCGA-GN-A4U5-01 17 2996249 2996249 G A OR1D2 Silent p.L14L 0.21 TCGA-GN-A4U5-01 17 34105748 34105748 A G MMP28 3'UTR 0.50 TCGA-GN-A4U5-01 17 3985783 3985783 C T ZZEF1 Missense_Mutation p.E888K 0.20 tolerated(0.09) benign(0.144) TCGA-GN-A4U5-01 17 42255124 42255124 G A ASB16 Intron 0.21 TCGA-GN-A4U5-01 17 48631752 48631752 C T SPATA20 Missense_Mutation p.P700S 0.20 deleterious(0.03) probably_damaging(0.976) TCGA-GN-A4U5-01 17 5433823 5433823 G A NLRP1 Silent p.L1166L 0.20 TCGA-GN-A4U5-01 17 59556119 59556119 G A TBX4 Silent p.V227V 0.23 TCGA-GN-A4U5-01 17 62265600 62265600 G A TEX2 Silent p.V791V 0.20 TCGA-GN-A4U5-01 17 62499972 62499972 G A DDX5 Silent p.A152A 0.14 TCGA-GN-A4U5-01 17 62499973 62499973 G A DDX5 Missense_Mutation p.A152V 0.14 deleterious(0.01) possibly_damaging(0.62) TCGA-GN-A4U5-01 17 62793422 62793422 G A PLEKHM1P RNA 0.24 TCGA-GN-A4U5-01 17 65908341 65908341 C T BPTF Silent p.I1447I 0.28 TCGA-GN-A4U5-01 17 7227297 7227297 C T NEURL4 Silent p.G699G 0.28 TCGA-GN-A4U5-01 17 74475046 74475046 C T RHBDF2 Missense_Mutation p.E201K 0.26 deleterious(0.02) possibly_damaging(0.79) TCGA-GN-A4U5-01 17 7606099 7606099 T G WRAP53 Silent p.G401G 0.18 TCGA-GN-A4U5-01 17 7606100 7606100 T G WRAP53 Missense_Mutation p.Y402D 0.20 tolerated(0.68) benign(0.035) TCGA-GN-A4U5-01 17 7636448 7636448 C T DNAH2 Missense_Mutation p.P148L 0.23 benign(0.01) TCGA-GN-A4U5-01 17 79637319 79637319 C A CCDC137 Silent p.V111V 0.27 TCGA-GN-A4U5-01 17 79637320 79637320 C A CCDC137 Missense_Mutation p.P112T 0.27 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 17 8701850 8701850 G A MFSD6L Missense_Mutation p.H197Y 0.22 tolerated(0.06) benign(0.058) TCGA-GN-A4U5-01 17 9515689 9515689 C T WDR16 Silent p.L306L 0.20 TCGA-GN-A4U5-01 18 21529798 21529798 C T LAMA3 Missense_Mutation p.P3141S 0.21 possibly_damaging(0.796) TCGA-GN-A4U5-01 18 28711619 28711619 C T DSC1 Missense_Mutation p.G809R 0.18 tolerated(0.42) probably_damaging(0.991) TCGA-GN-A4U5-01 18 28711620 28711620 C T DSC1 Silent p.Q808Q 0.17 TCGA-GN-A4U5-01 18 44585924 44585924 C T KATNAL2 Intron 0.21 TCGA-GN-A4U5-01 18 57136796 57136796 C T CCBE1 Silent p.T103T 0.20 TCGA-GN-A4U5-01 18 59483194 59483194 C T RNF152 Missense_Mutation p.G168E 0.19 tolerated(0.25) probably_damaging(0.998) TCGA-GN-A4U5-01 18 61390711 61390711 C T SERPINB11 3'UTR 0.23 TCGA-GN-A4U5-01 18 6868186 6868186 C T ARHGAP28 Missense_Mutation p.S96F 0.25 tolerated(0.06) possibly_damaging(0.541) TCGA-GN-A4U5-01 19 11436131 11436131 C T RAB3D Silent p.G201G 0.15 TCGA-GN-A4U5-01 19 1220465 1220465 C T STK11 Silent p.T186T 0.33 TCGA-GN-A4U5-01 19 12244209 12244209 G A ZNF20 Silent p.F264F 0.23 TCGA-GN-A4U5-01 19 15769189 15769189 G A CYP4F3 Missense_Mutation p.G411S 0.28 deleterious(0.01) possibly_damaging(0.896) TCGA-GN-A4U5-01 19 17366232 17366232 C T USHBP1 Missense_Mutation p.G552R 0.16 tolerated(0.16) benign(0.005) TCGA-GN-A4U5-01 19 1913094 1913094 C T ADAT3 Nonsense_Mutation p.Q350* 0.30 TCGA-GN-A4U5-01 19 20728371 20728371 G A ZNF737 Missense_Mutation p.S213F 0.11 tolerated(0.48) benign(0.236) TCGA-GN-A4U5-01 19 38590622 38590622 C T SIPA1L3 Silent p.S562S 0.20 TCGA-GN-A4U5-01 19 38968473 38968473 G A RYR1 Missense_Mutation p.V1473M 0.22 probably_damaging(0.998) TCGA-GN-A4U5-01 19 41074187 41074187 G A SPTBN4 Missense_Mutation p.G2319R 0.29 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-GN-A4U5-01 19 41444963 41444963 G C CYP2B7P RNA 0.16 TCGA-GN-A4U5-01 19 4294628 4294628 G A TMIGD2 Silent p.I166I 0.22 TCGA-GN-A4U5-01 19 44251828 44251828 G A SMG9 Silent p.I149I 0.26 TCGA-GN-A4U5-01 19 45150643 45150643 C T PVR Silent p.A76A 0.25 TCGA-GN-A4U5-01 19 45207430 45207430 C T CEACAM16 Silent p.L175L 0.21 TCGA-GN-A4U5-01 19 46195224 46195224 C T SNRPD2 5'UTR 0.24 TCGA-GN-A4U5-01 19 49248931 49248931 C T IZUMO1 Silent p.K62K 0.22 TCGA-GN-A4U5-01 19 50060183 50060183 G A NOSIP Silent p.F162F 0.14 TCGA-GN-A4U5-01 19 51960889 51960889 G A SIGLEC8 Missense_Mutation p.P187S 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 19 54291150 54291150 C T MIR372 RNA 0.25 TCGA-GN-A4U5-01 19 54675685 54675685 G A TMC4 Missense_Mutation p.P89S 0.15 tolerated(0.22) benign(0.017) TCGA-GN-A4U5-01 19 56244443 56244443 G A NLRP9 Missense_Mutation p.P252S 0.14 deleterious(0.04) possibly_damaging(0.822) TCGA-GN-A4U5-01 19 56424129 56424129 C T NLRP13 Missense_Mutation p.E352K 0.21 tolerated(0.35) possibly_damaging(0.621) TCGA-GN-A4U5-01 19 57327571 57327571 C T PEG3 Missense_Mutation p.E747K 0.21 tolerated(0.07) benign(0.195) TCGA-GN-A4U5-01 19 5789316 5789316 C A DUS3L Missense_Mutation p.G268W 0.21 deleterious(0) possibly_damaging(0.447) TCGA-GN-A4U5-01 19 58232575 58232575 G A ZNF671 Silent p.A293A 0.25 TCGA-GN-A4U5-01 19 58232576 58232576 G A ZNF671 Missense_Mutation p.A293V 0.25 tolerated(0.16) benign(0.05) TCGA-GN-A4U5-01 19 58290773 58290773 G C ZNF586 Missense_Mutation p.R273P 0.17 tolerated(0.06) probably_damaging(0.936) TCGA-GN-A4U5-01 19 58596076 58596076 G A ZSCAN18 Silent p.P559P 0.25 TCGA-GN-A4U5-01 19 603852 603852 C T HCN2 Missense_Mutation p.S314F 0.26 deleterious(0.03) probably_damaging(0.979) TCGA-GN-A4U5-01 19 9064879 9064879 T C MUC16 Missense_Mutation p.T7523A 0.23 unknown(0) TCGA-GN-A4U5-01 19 9086636 9086636 C T MUC16 Missense_Mutation p.G1727R 0.28 unknown(0) TCGA-GN-A4U5-01 1 110211916 110211916 C T GSTM2 Missense_Mutation p.P61L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U5-01 1 112270124 112270124 G A FAM212B Silent p.P120P 0.28 TCGA-GN-A4U5-01 1 112329632 112329632 C T KCND3 Silent p.V401V 0.27 TCGA-GN-A4U5-01 1 117699461 117699461 A T VTCN1 Silent p.P60P 0.29 TCGA-GN-A4U5-01 1 151747265 151747265 G A TDRKH Silent p.A518A 0.18 TCGA-GN-A4U5-01 1 152058579 152058579 C T TCHHL1 Missense_Mutation p.E527K 0.19 tolerated(0.15) benign(0.218) TCGA-GN-A4U5-01 1 152286031 152286031 C T FLG Missense_Mutation p.G444E 0.18 possibly_damaging(0.573) TCGA-GN-A4U5-01 1 152286997 152286997 C T FLG Missense_Mutation p.R122K 0.39 possibly_damaging(0.514) TCGA-GN-A4U5-01 1 152552408 152552408 G A LCE3D Missense_Mutation p.S2F 0.15 tolerated_low_confidence(0.16) unknown(0) TCGA-GN-A4U5-01 1 152883855 152883855 G A IVL Missense_Mutation p.G528R 0.15 tolerated(0.09) benign(0.003) TCGA-GN-A4U5-01 1 152883856 152883856 G A IVL Missense_Mutation p.G528E 0.14 tolerated(0.52) benign(0.001) TCGA-GN-A4U5-01 1 155707950 155707950 C T DAP3 Missense_Mutation p.P372S 0.35 tolerated(0.48) benign(0.001) TCGA-GN-A4U5-01 1 155707951 155707951 C T DAP3 Missense_Mutation p.P372L 0.36 tolerated(0.46) benign(0) TCGA-GN-A4U5-01 1 155883966 155883966 A C KIAA0907 Nonsense_Mutation p.Y597* 0.21 TCGA-GN-A4U5-01 1 159275885 159275885 A G FCER1A Missense_Mutation p.K147E 0.42 deleterious(0.01) possibly_damaging(0.79) TCGA-GN-A4U5-01 1 163122442 163122442 C T RGS5 Nonsense_Mutation p.W94* 0.15 TCGA-GN-A4U5-01 1 163325181 163325181 G A NUF2 Silent p.K439K 0.39 TCGA-GN-A4U5-01 1 163325182 163325182 G A NUF2 Missense_Mutation p.A440T 0.40 tolerated(0.48) benign(0.005) TCGA-GN-A4U5-01 1 16464596 16464596 C T EPHA2 Missense_Mutation p.G355E 0.19 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U5-01 1 171252314 171252314 G A FMO1 Missense_Mutation p.M405I 0.21 deleterious(0.02) possibly_damaging(0.73) TCGA-GN-A4U5-01 1 174200364 174200364 G C RABGAP1L Missense_Mutation p.G138A 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A4U5-01 1 18809720 18809720 G A KLHDC7A Missense_Mutation p.E749K 0.22 deleterious(0.03) benign(0.338) TCGA-GN-A4U5-01 1 190067681 190067681 C T BRINP3 Missense_Mutation p.E590K 0.20 deleterious(0.01) benign(0.192) TCGA-GN-A4U5-01 1 1960675 1960675 C T GABRD Nonsense_Mutation p.Q273* 0.40 TCGA-GN-A4U5-01 1 196952101 196952101 G A CFHR5 Missense_Mutation p.E49K 0.17 tolerated(1) benign(0.008) TCGA-GN-A4U5-01 1 200574995 200574995 G A KIF14 Silent p.I545I 0.45 TCGA-GN-A4U5-01 1 204588334 204588334 G A LRRN2 Missense_Mutation p.L263F 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 1 205687425 205687425 G A NUCKS1 Missense_Mutation p.P239S 0.32 tolerated_low_confidence(0.41) benign(0.002) TCGA-GN-A4U5-01 1 205687426 205687426 G A NUCKS1 Silent p.A238A 0.32 TCGA-GN-A4U5-01 1 214170911 214170911 G A PROX1 Missense_Mutation p.G345S 0.16 tolerated(0.33) benign(0.024) TCGA-GN-A4U5-01 1 237580394 237580394 C T RYR2 Silent p.S273S 0.14 TCGA-GN-A4U5-01 1 237787160 237787160 G A RYR2 Missense_Mutation p.M2004I 0.39 benign(0.006) TCGA-GN-A4U5-01 1 238048777 238048777 G A ZP4 Silent p.P358P 0.19 TCGA-GN-A4U5-01 1 238048778 238048778 G A ZP4 Missense_Mutation p.P358L 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A4U5-01 1 247752258 247752258 G A OR2G2 Silent p.E199E 0.19 TCGA-GN-A4U5-01 1 247752259 247752259 G A OR2G2 Missense_Mutation p.A200T 0.19 tolerated(0.11) possibly_damaging(0.507) TCGA-GN-A4U5-01 1 248402698 248402698 G A OR2M4 Silent p.G156G 0.35 TCGA-GN-A4U5-01 1 248436923 248436923 G A OR2T33 Missense_Mutation p.S65F 0.37 deleterious(0) probably_damaging(0.954) TCGA-GN-A4U5-01 1 248525706 248525706 C T OR2T4 Missense_Mutation p.S275F 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 1 248636789 248636789 G A OR2T3 Silent p.G46G 0.33 TCGA-GN-A4U5-01 1 248737921 248737921 C T OR2T34 Silent p.G46G 0.17 TCGA-GN-A4U5-01 1 249149769 249149769 G A ZNF692 Missense_Mutation p.P321L 0.18 deleterious(0.04) benign(0.113) TCGA-GN-A4U5-01 1 26694975 26694975 C T ZNF683 Missense_Mutation p.D30N 0.20 deleterious(0.05) benign(0.088) TCGA-GN-A4U5-01 1 35223682 35223682 C T GJB5 Silent p.L251L 0.19 TCGA-GN-A4U5-01 1 39361738 39361738 G C RHBDL2 Missense_Mutation p.S171C 0.25 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U5-01 1 41978654 41978654 G A HIVEP3 Missense_Mutation p.P2080S 0.23 benign(0.007) TCGA-GN-A4U5-01 1 46743557 46743557 G A RAD54L Silent p.V646V 0.30 TCGA-GN-A4U5-01 1 47406945 47406945 G A CYP4A11 Missense_Mutation p.P54L 0.22 deleterious(0.03) possibly_damaging(0.732) TCGA-GN-A4U5-01 1 47685577 47685577 C T TAL1 Missense_Mutation p.G271R 0.38 tolerated(0.19) benign(0.001) TCGA-GN-A4U5-01 1 55118638 55118638 A C MROH7 Missense_Mutation p.E13D 0.23 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GN-A4U5-01 1 55118639 55118639 G A MROH7 Missense_Mutation p.D14N 0.24 tolerated_low_confidence(0.21) benign(0.01) TCGA-GN-A4U5-01 1 57185969 57185969 C T C1orf168 Missense_Mutation p.V670M 0.19 deleterious(0) probably_damaging(0.984) TCGA-GN-A4U5-01 1 57221573 57221573 G A C1orf168 Missense_Mutation p.P376S 0.17 tolerated(0.42) benign(0.017) TCGA-GN-A4U5-01 1 75055424 75055424 C T C1orf173 Silent p.G689G 0.26 TCGA-GN-A4U5-01 1 78426128 78426128 G A FUBP1 Missense_Mutation p.P466L 0.16 tolerated(0.65) unknown(0) TCGA-GN-A4U5-01 1 8074458 8074458 T C ERRFI1 Splice_Site p.X68_splice 0.20 TCGA-GN-A4U5-01 1 86959203 86959203 C T CLCA1 Missense_Mutation p.P534L 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 1 94486874 94486874 C T ABCA4 Missense_Mutation p.R1647K 0.23 tolerated(1) benign(0.002) TCGA-GN-A4U5-01 20 1456765 1456765 C T SIRPB2 3'UTR 0.22 TCGA-GN-A4U5-01 20 23421092 23421092 G A CSTL1 Missense_Mutation p.R63Q 0.22 tolerated(0.13) benign(0.027) TCGA-GN-A4U5-01 20 419390 419390 G A TBC1D20 Missense_Mutation p.P351L 0.22 tolerated(0.14) benign(0.005) TCGA-GN-A4U5-01 20 419391 419391 G A TBC1D20 Missense_Mutation p.P351S 0.22 tolerated(0.42) benign(0) TCGA-GN-A4U5-01 20 42355061 42355061 G A GTSF1L Nonsense_Mutation p.Q92* 0.21 TCGA-GN-A4U5-01 20 43995746 43995746 C T SYS1 Silent p.S154S 0.25 TCGA-GN-A4U5-01 20 43995896 43995896 G A SYS1 3'UTR 0.29 TCGA-GN-A4U5-01 20 53205346 53205346 G A DOK5 Splice_Site p.X137_splice 0.29 TCGA-GN-A4U5-01 20 58587745 58587745 C T CDH26 Missense_Mutation p.P820L 0.20 tolerated(0.23) benign(0.002) TCGA-GN-A4U5-01 20 62663304 62663304 C T PRPF6 Silent p.A860A 0.24 TCGA-GN-A4U5-01 20 7963170 7963170 G A TMX4 Missense_Mutation p.L260F 0.21 tolerated(0.22) probably_damaging(0.997) TCGA-GN-A4U5-01 20 8696850 8696850 C T PLCB1 Intron 0.17 TCGA-GN-A4U5-01 21 32127456 32127456 T A KRTAP21-1 3'UTR 0.21 TCGA-GN-A4U5-01 21 35254658 35254658 G - ITSN1 Frame_Shift_Del p.D1485Tfs*5 0.17 TCGA-GN-A4U5-01 21 43557616 43557616 C T UMODL1 Silent p.F1409F 0.21 TCGA-GN-A4U5-01 21 45821585 45821585 G A TRPM2 Silent p.V781V 0.24 TCGA-GN-A4U5-01 22 17288837 17288837 G A XKR3 Missense_Mutation p.L43F 0.45 deleterious(0.04) probably_damaging(0.961) TCGA-GN-A4U5-01 22 22453493 22453493 G A IGLV8-61 Missense_Mutation p.R80H 0.44 deleterious(0.04) benign(0.089) TCGA-GN-A4U5-01 22 24919670 24919670 C T UPB1 Missense_Mutation p.R334W 0.49 deleterious(0) possibly_damaging(0.485) TCGA-GN-A4U5-01 22 26287362 26287362 G A MYO18B Missense_Mutation p.R1509K 0.38 tolerated(0.93) benign(0.012) TCGA-GN-A4U5-01 22 46760538 46760538 C T CELSR1 Missense_Mutation p.V2884M 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-GN-A4U5-01 2 102781691 102781691 G A IL1R1 Missense_Mutation p.G138E 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 2 128477201 128477201 C T WDR33 Missense_Mutation p.G800R 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GN-A4U5-01 2 132021487 132021487 C T POTEE Missense_Mutation p.T820I 0.14 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-GN-A4U5-01 2 170042106 170042106 A T LRP2 Missense_Mutation p.I3251N 0.19 probably_damaging(0.987) TCGA-GN-A4U5-01 2 170096205 170096205 G A LRP2 Missense_Mutation p.P1376S 0.17 benign(0.285) TCGA-GN-A4U5-01 2 175326148 175326148 G AA GPR155 Frame_Shift_Ins p.Y516Lfs*37 0.21 TCGA-GN-A4U5-01 2 179319116 179319116 G A DFNB59 Missense_Mutation p.G90E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 2 179584840 179584840 C T TTN Silent p.R7843R 0.26 TCGA-GN-A4U5-01 2 179587635 179587635 G A TTN Missense_Mutation p.P7331S 0.30 TCGA-GN-A4U5-01 2 182413324 182413324 C T CERKL Missense_Mutation p.D387N 0.29 tolerated(0.05) benign(0.078) TCGA-GN-A4U5-01 2 189875586 189875586 C T COL3A1 Silent p.F1408F 0.21 TCGA-GN-A4U5-01 2 196689147 196689147 T C DNAH7 Silent p.E3041E 0.18 TCGA-GN-A4U5-01 2 196689149 196689149 C T DNAH7 Missense_Mutation p.E3041K 0.19 deleterious(0) probably_damaging(0.994) TCGA-GN-A4U5-01 2 219029367 219029367 C T CXCR1 Missense_Mutation p.V190I 0.21 tolerated(0.42) benign(0.004) TCGA-GN-A4U5-01 2 219029368 219029368 C T CXCR1 Silent p.E189E 0.21 TCGA-GN-A4U5-01 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.24 deleterious(0) probably_damaging(0.954) TCGA-GN-A4U5-01 2 226378373 226378373 C T NYAP2 Missense_Mutation p.P170S 0.15 tolerated(0.7) benign(0.001) TCGA-GN-A4U5-01 2 231134620 231134620 G A SP140 Missense_Mutation p.G466R 0.23 tolerated(0.87) benign(0.078) TCGA-GN-A4U5-01 2 231134621 231134621 G A SP140 Missense_Mutation p.G466E 0.23 tolerated(0.45) benign(0.048) TCGA-GN-A4U5-01 2 233759548 233759548 C T NGEF Missense_Mutation p.E303K 0.18 tolerated(0.3) possibly_damaging(0.805) TCGA-GN-A4U5-01 2 234669127 234669127 C T UGT1A8 Intron 0.22 TCGA-GN-A4U5-01 2 238296553 238296553 G A COL6A3 Silent p.F328F 0.14 TCGA-GN-A4U5-01 2 27479339 27479339 C T SLC30A3 Silent p.S311S 0.23 TCGA-GN-A4U5-01 2 30381737 30381737 C T YPEL5 3'UTR 0.16 TCGA-GN-A4U5-01 2 31560576 31560576 G A XDH Silent p.L1294L 0.19 TCGA-GN-A4U5-01 2 31569635 31569635 C T XDH Nonsense_Mutation p.W1117* 0.21 TCGA-GN-A4U5-01 2 33813420 33813420 G A FAM98A Silent p.F168F 0.23 TCGA-GN-A4U5-01 2 64322010 64322010 G A PELI1 Silent p.T361T 0.18 TCGA-GN-A4U5-01 2 70444040 70444040 G A TIA1 Silent p.P187P 0.21 TCGA-GN-A4U5-01 2 95774016 95774016 G A MRPS5 Nonsense_Mutation p.R181* 0.26 TCGA-GN-A4U5-01 2 95774017 95774017 G A MRPS5 Silent p.D180D 0.25 TCGA-GN-A4U5-01 2 97526473 97526473 C A SEMA4C Missense_Mutation p.D798Y 0.22 deleterious(0.01) possibly_damaging(0.486) TCGA-GN-A4U5-01 2 99448903 99448903 C T KIAA1211L Missense_Mutation p.D150N 0.26 deleterious(0) possibly_damaging(0.728) TCGA-GN-A4U5-01 3 10012300 10012300 C T EMC3 Silent p.R180R 0.28 TCGA-GN-A4U5-01 3 101038499 101038499 C T IMPG2 Missense_Mutation p.G88E 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U5-01 3 108698385 108698385 C T MORC1 Silent p.V818V 0.21 TCGA-GN-A4U5-01 3 111263901 111263901 G A CD96 Missense_Mutation p.E24K 0.18 tolerated(0.13) benign(0.393) TCGA-GN-A4U5-01 3 111564690 111564690 C T PLCXD2 3'UTR 0.10 TCGA-GN-A4U5-01 3 113380087 113380087 T A KIAA2018 Missense_Mutation p.I148F 0.25 probably_damaging(0.998) TCGA-GN-A4U5-01 3 115395235 115395235 G A GAP43 Missense_Mutation p.G172S 0.30 tolerated(0.08) benign(0.02) TCGA-GN-A4U5-01 3 121340903 121340903 G A FBXO40 Silent p.G209G 0.26 TCGA-GN-A4U5-01 3 126710273 126710273 C T PLXNA1 Missense_Mutation p.P414L 0.19 deleterious(0) possibly_damaging(0.489) TCGA-GN-A4U5-01 3 126747833 126747833 C T PLXNA1 Intron 0.24 TCGA-GN-A4U5-01 3 151535329 151535329 G A AADAC Missense_Mutation p.R105K 0.23 tolerated(0.06) possibly_damaging(0.899) TCGA-GN-A4U5-01 3 155198632 155198632 G A PLCH1 3'UTR 0.47 TCGA-GN-A4U5-01 3 175473127 175473127 C T NAALADL2 Missense_Mutation p.R704C 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A4U5-01 3 183824092 183824092 G A HTR3E Missense_Mutation p.E394K 0.19 tolerated(0.6) benign(0.016) TCGA-GN-A4U5-01 3 19322804 19322804 C T KCNH8 Missense_Mutation p.P142L 0.26 tolerated(0.34) benign(0) TCGA-GN-A4U5-01 3 32933312 32933312 C T TRIM71 3'UTR 0.24 TCGA-GN-A4U5-01 3 36779094 36779094 C T DCLK3 Missense_Mutation p.E353K 0.22 tolerated(0.07) benign(0.089) TCGA-GN-A4U5-01 3 38104269 38104269 C T DLEC1 Silent p.F357F 0.20 TCGA-GN-A4U5-01 3 38655262 38655262 C T SCN5A Intron 0.20 TCGA-GN-A4U5-01 3 38655263 38655263 C T SCN5A Intron 0.20 TCGA-GN-A4U5-01 3 38752383 38752383 G A SCN10A Silent p.T1365T 0.23 TCGA-GN-A4U5-01 3 38913066 38913066 C T SCN11A Missense_Mutation p.G1210E 0.23 tolerated(0.91) benign(0.044) TCGA-GN-A4U5-01 3 439923 439923 G A CHL1 Silent p.G1036G 0.37 TCGA-GN-A4U5-01 3 47458802 47458802 G A SCAP Missense_Mutation p.R988W 0.11 deleterious(0) probably_damaging(0.984) TCGA-GN-A4U5-01 3 52183327 52183327 G A POC1A Silent p.F118F 0.29 TCGA-GN-A4U5-01 3 52722193 52722193 C T GNL3 Silent p.C131C 0.25 TCGA-GN-A4U5-01 3 52722194 52722194 C T GNL3 Nonsense_Mutation p.Q132* 0.26 TCGA-GN-A4U5-01 3 52859924 52859924 G A ITIH4 Missense_Mutation p.A246V 0.22 tolerated(0.3) benign(0.01) TCGA-GN-A4U5-01 3 54157532 54157532 C T CACNA2D3 Intron 0.29 TCGA-GN-A4U5-01 3 56779284 56779284 G A ARHGEF3 Silent p.I305I 0.21 TCGA-GN-A4U5-01 3 66428160 66428160 G A SLC25A26 Missense_Mutation p.G252S 0.26 deleterious(0) probably_damaging(0.986) TCGA-GN-A4U5-01 4 111470502 111470502 G A ENPEP Missense_Mutation p.E718K 0.24 tolerated(0.96) benign(0.004) TCGA-GN-A4U5-01 4 119745847 119745847 G A SEC24D Missense_Mutation p.P59L 0.25 tolerated_low_confidence(0.19) benign(0) TCGA-GN-A4U5-01 4 119952719 119952719 C T SYNPO2 Missense_Mutation p.S930L 0.23 deleterious(0) probably_damaging(0.935) TCGA-GN-A4U5-01 4 123192553 123192553 C T KIAA1109 Missense_Mutation p.S2625F 0.26 probably_damaging(0.959) TCGA-GN-A4U5-01 4 140306099 140306099 A G NAA15 Missense_Mutation p.R757G 0.18 tolerated(0.08) benign(0.044) TCGA-GN-A4U5-01 4 141313823 141313823 G A CLGN Missense_Mutation p.P470S 0.11 deleterious(0.04) benign(0.164) TCGA-GN-A4U5-01 4 155156457 155156457 C T DCHS2 Missense_Mutation p.R2661K 0.18 deleterious(0.03) possibly_damaging(0.81) TCGA-GN-A4U5-01 4 155243505 155243505 C T DCHS2 Missense_Mutation p.G930E 0.19 tolerated(0.15) possibly_damaging(0.819) TCGA-GN-A4U5-01 4 177052795 177052795 C T WDR17 Missense_Mutation p.S359F 0.17 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U5-01 4 25678333 25678333 C A SLC34A2 Missense_Mutation p.P679T 0.16 tolerated_low_confidence(0.09) benign(0.005) TCGA-GN-A4U5-01 4 25678334 25678334 C T SLC34A2 Missense_Mutation p.P679L 0.16 tolerated_low_confidence(0.05) benign(0.058) TCGA-GN-A4U5-01 4 40427904 40427904 C T RBM47 3'UTR 0.18 TCGA-GN-A4U5-01 4 672746 672746 G A MYL5 Splice_Site p.X38_splice 0.25 TCGA-GN-A4U5-01 4 672747 672747 G A MYL5 Missense_Mutation p.A38T 0.24 deleterious(0) benign(0.098) TCGA-GN-A4U5-01 4 70155434 70155434 C T UGT2B28 Missense_Mutation p.R352W 0.16 deleterious(0.01) possibly_damaging(0.891) TCGA-GN-A4U5-01 4 73935387 73935387 C T COX18 5'UTR 0.23 TCGA-GN-A4U5-01 4 77290735 77290735 C T CCDC158 Silent p.K397K 0.14 TCGA-GN-A4U5-01 4 77305543 77305543 C T CCDC158 Missense_Mutation p.D142N 0.28 tolerated(0.97) benign(0.224) TCGA-GN-A4U5-01 4 79428689 79428689 A T FRAS1 Missense_Mutation p.D3144V 0.10 benign(0.323) TCGA-GN-A4U5-01 4 81123331 81123331 C T PRDM8 Missense_Mutation p.P239S 0.30 tolerated(0.29) benign(0) TCGA-GN-A4U5-01 4 89042904 89042904 C T ABCG2 Missense_Mutation p.R191K 0.21 tolerated(0.09) benign(0.252) TCGA-GN-A4U5-01 5 121786416 121786416 G A SNCAIP Missense_Mutation p.G625E 0.23 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 5 130799686 130799686 T A RAPGEF6 Intron 0.16 TCGA-GN-A4U5-01 5 137419717 137419717 C T WNT8A 5'Flank 0.25 TCGA-GN-A4U5-01 5 138724328 138724328 G A MZB1 Intron 0.24 TCGA-GN-A4U5-01 5 140431819 140431819 G A PCDHB1 Missense_Mutation p.S255N 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-GN-A4U5-01 5 140481048 140481048 G A PCDHB3 Missense_Mutation p.G272E 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-GN-A4U5-01 5 140724797 140724797 T C PCDHGA3 Silent p.D399D 0.27 TCGA-GN-A4U5-01 5 140789960 140789960 C T PCDHGB6 Missense_Mutation p.L731F 0.26 tolerated(0.2) benign(0.023) TCGA-GN-A4U5-01 5 14758606 14758606 G A ANKH Missense_Mutation p.P139S 0.16 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 5 148206311 148206311 C T ADRB2 5'UTR 0.27 TCGA-GN-A4U5-01 5 148206312 148206312 C T ADRB2 5'UTR 0.27 TCGA-GN-A4U5-01 5 160033809 160033809 C T ATP10B Silent p.L1041L 0.14 TCGA-GN-A4U5-01 5 169506044 169506044 G A DOCK2 Missense_Mutation p.G1687E 0.21 tolerated(0.3) benign(0.021) TCGA-GN-A4U5-01 5 172517676 172517676 A G CREBRF Missense_Mutation p.Q165R 0.16 tolerated_low_confidence(0.13) benign(0.315) TCGA-GN-A4U5-01 5 38982092 38982092 G A RICTOR Silent p.T210T 0.20 TCGA-GN-A4U5-01 5 40947807 40947807 C T C7 Missense_Mutation p.S281F 0.10 deleterious(0.03) benign(0.072) TCGA-GN-A4U5-01 5 41143073 41143073 G C C6 Missense_Mutation p.Q887E 0.21 tolerated(0.23) benign(0.064) TCGA-GN-A4U5-01 5 41199882 41199882 G A C6 Missense_Mutation p.R145C 0.16 deleterious(0.01) probably_damaging(0.912) TCGA-GN-A4U5-01 5 55034809 55034809 G A DDX4 Nonsense_Mutation p.W6* 0.29 TCGA-GN-A4U5-01 5 60982799 60982799 G A C5orf64 Missense_Mutation p.E43K 0.19 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-GN-A4U5-01 5 61826558 61826558 C T IPO11 Missense_Mutation p.P719S 0.20 tolerated(0.31) benign(0.094) TCGA-GN-A4U5-01 5 73931048 73931048 G A ENC1 Silent p.I421I 0.24 TCGA-GN-A4U5-01 5 78076093 78076093 C T ARSB 3'UTR 0.17 TCGA-GN-A4U5-01 5 80600692 80600692 G C ZCCHC9 Missense_Mutation p.R39P 0.18 tolerated(0.25) benign(0.107) TCGA-GN-A4U5-01 5 82400766 82400766 C T XRCC4 Missense_Mutation p.L10F 0.15 tolerated(0.17) probably_damaging(0.992) TCGA-GN-A4U5-01 5 85915198 85915198 G A COX7C Nonsense_Mutation p.W35* 0.20 TCGA-GN-A4U5-01 6 108230220 108230220 G A SEC63 Missense_Mutation p.S215L 0.12 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 6 111694003 111694003 G A REV3L Missense_Mutation p.P1852L 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A4U5-01 6 129371109 129371109 G A LAMA2 Silent p.T53T 0.26 TCGA-GN-A4U5-01 6 135776887 135776887 G A AHI1 Silent p.V443V 0.37 TCGA-GN-A4U5-01 6 151859395 151859395 G A CCDC170 Silent p.Q134Q 0.22 TCGA-GN-A4U5-01 6 155136937 155136937 T C SCAF8 Missense_Mutation p.I503T 0.13 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 6 155575605 155575605 G A TIAM2 Missense_Mutation p.E1456K 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-GN-A4U5-01 6 160188079 160188079 G A ACAT2 Missense_Mutation p.G78E 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-GN-A4U5-01 6 160961213 160961213 G A LPA Missense_Mutation p.S1866F 0.24 tolerated(0.13) benign(0.072) TCGA-GN-A4U5-01 6 161134082 161134082 G A PLG Missense_Mutation p.D158N 0.22 tolerated(0.07) possibly_damaging(0.853) TCGA-GN-A4U5-01 6 25777192 25777192 G A SLC17A4 Intron 0.20 TCGA-GN-A4U5-01 6 27368635 27368635 G A ZNF391 Silent p.E162E 0.20 TCGA-GN-A4U5-01 6 29640703 29640703 C T ZFP57 Silent p.K395K 0.21 TCGA-GN-A4U5-01 6 32010277 32010277 G A TNXB Silent p.P484P 0.21 TCGA-GN-A4U5-01 6 32010278 32010278 G A TNXB Missense_Mutation p.P484L 0.21 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U5-01 6 32134488 32134488 C A EGFL8 Missense_Mutation p.R79S 0.20 deleterious(0.02) benign(0.032) TCGA-GN-A4U5-01 6 32548633 32548633 C T HLA-DRB1 Missense_Mutation p.R218K 0.04 tolerated(0.19) benign(0.009) TCGA-GN-A4U5-01 6 33373371 33373371 C T KIFC1 Missense_Mutation p.T500I 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-GN-A4U5-01 6 38790641 38790641 G A DNAH8 Missense_Mutation p.R967K 0.17 benign(0.036) TCGA-GN-A4U5-01 6 38790642 38790642 G A DNAH8 Silent p.R967R 0.17 TCGA-GN-A4U5-01 6 38820560 38820560 G A DNAH8 Missense_Mutation p.G1636R 0.27 probably_damaging(0.93) TCGA-GN-A4U5-01 6 46190790 46190790 G A RCAN2 3'UTR 0.19 TCGA-GN-A4U5-01 6 52101661 52101661 C T IL17F 3'UTR 0.19 TCGA-GN-A4U5-01 6 71501429 71501429 C T SMAP1 Missense_Mutation p.S151F 0.19 deleterious(0.01) benign(0.005) TCGA-GN-A4U5-01 6 72968784 72968784 T G RIMS1 Missense_Mutation p.V1008G 0.20 tolerated(0.7) benign(0.066) TCGA-GN-A4U5-01 7 100350312 100350312 G A ZAN Missense_Mutation p.E862K 0.38 unknown(0) TCGA-GN-A4U5-01 7 107698358 107698358 G A LAMB4 Missense_Mutation p.P1100S 0.24 tolerated(0.15) benign(0.087) TCGA-GN-A4U5-01 7 108524042 108524042 A G C7orf66 3'UTR 0.19 TCGA-GN-A4U5-01 7 129856366 129856366 G A SSMEM1 3'UTR 0.16 TCGA-GN-A4U5-01 7 140378994 140378994 C T ADCK2 Nonsense_Mutation p.Q374* 0.22 TCGA-GN-A4U5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-GN-A4U5-01 7 142460761 142460761 G A PRSS1 Missense_Mutation p.G212R 0.16 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U5-01 7 143417213 143417213 G A FAM115C Missense_Mutation p.G354D 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A4U5-01 7 143792875 143792875 G A OR2A12 Silent p.L225L 0.39 TCGA-GN-A4U5-01 7 144015606 144015606 G A OR2A1 Missense_Mutation p.R130Q 0.16 tolerated(0.84) benign(0.002) TCGA-GN-A4U5-01 7 146997231 146997231 A G CNTNAP2 Splice_Site p.X450_splice 0.35 TCGA-GN-A4U5-01 7 148716109 148716109 G A PDIA4 Silent p.D150D 0.21 TCGA-GN-A4U5-01 7 21584661 21584661 C T DNAH11 Missense_Mutation p.S130F 0.24 benign(0.003) TCGA-GN-A4U5-01 7 2515442 2515442 A T GRIFIN RNA 0.17 TCGA-GN-A4U5-01 7 5104539 5104539 C T RBAK Silent p.S484S 0.34 TCGA-GN-A4U5-01 7 51096740 51096740 G A COBL Missense_Mutation p.P685S 0.14 tolerated(0.06) benign(0.174) TCGA-GN-A4U5-01 7 5401280 5401280 G A TNRC18 Missense_Mutation p.P1536S 0.43 benign(0.009) TCGA-GN-A4U5-01 7 73753213 73753213 C T CLIP2 Missense_Mutation p.P186L 0.19 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U5-01 7 82389969 82389969 C T PCLO Missense_Mutation p.G5092R 0.38 unknown(0) TCGA-GN-A4U5-01 7 82581416 82581416 C T PCLO Silent p.R2951R 0.34 TCGA-GN-A4U5-01 7 82581417 82581417 C T PCLO Missense_Mutation p.R2951K 0.34 unknown(0) TCGA-GN-A4U5-01 7 87004963 87004963 C T CROT Silent p.I252I 0.17 TCGA-GN-A4U5-01 7 91509430 91509430 G A MTERF Intron 0.20 TCGA-GN-A4U5-01 7 98445664 98445664 G A TMEM130 3'UTR 0.14 TCGA-GN-A4U5-01 8 106811068 106811068 G A ZFPM2 Missense_Mutation p.E286K 0.20 tolerated(0.18) benign(0.038) TCGA-GN-A4U5-01 8 109001381 109001381 G A RSPO2 Silent p.F62F 0.23 TCGA-GN-A4U5-01 8 114290842 114290842 C T CSMD3 Missense_Mutation p.G165R 0.19 deleterious(0) possibly_damaging(0.471) TCGA-GN-A4U5-01 8 118147626 118147626 C T SLC30A8 Silent p.F20F 0.17 TCGA-GN-A4U5-01 8 120118089 120118089 G A COLEC10 Missense_Mutation p.E165K 0.25 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U5-01 8 13948096 13948096 G A SGCZ Silent p.S265S 0.23 TCGA-GN-A4U5-01 8 17090013 17090013 G A CNOT7 Silent p.L218L 0.23 TCGA-GN-A4U5-01 8 23306403 23306403 G A ENTPD4 Missense_Mutation p.P20S 0.21 tolerated_low_confidence(0.66) benign(0.021) TCGA-GN-A4U5-01 8 25718890 25718890 C T EBF2 Missense_Mutation p.E367K 0.22 deleterious(0) possibly_damaging(0.749) TCGA-GN-A4U5-01 8 27633957 27633957 A T ESCO2 Missense_Mutation p.E44D 0.35 deleterious(0.05) benign(0.035) TCGA-GN-A4U5-01 8 38275869 38275869 G A FGFR1 Missense_Mutation p.S467F 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-GN-A4U5-01 8 41834628 41834628 G A KAT6A Missense_Mutation p.P421S 0.25 probably_damaging(0.978) TCGA-GN-A4U5-01 8 41834629 41834629 G A KAT6A Silent p.S420S 0.25 TCGA-GN-A4U5-01 8 56436232 56436232 G A XKR4 Missense_Mutation p.E467K 0.19 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U5-01 8 6302373 6302373 C A MCPH1 Missense_Mutation p.T377N 0.10 tolerated(0.36) benign(0.022) TCGA-GN-A4U5-01 8 67929931 67929931 G A PPP1R42 Nonsense_Mutation p.R18* 0.17 TCGA-GN-A4U5-01 8 67929932 67929932 G A PPP1R42 Silent p.P17P 0.17 TCGA-GN-A4U5-01 9 119625959 119625959 G A ASTN2 Missense_Mutation p.S597F 0.44 deleterious(0) unknown(0) TCGA-GN-A4U5-01 9 134814811 134814811 G A MED27 Missense_Mutation p.S177F 0.23 deleterious(0) possibly_damaging(0.525) TCGA-GN-A4U5-01 9 135779817 135779817 G A TSC1 Silent p.V674V 0.25 TCGA-GN-A4U5-01 9 136402608 136402608 G A ADAMTSL2 Missense_Mutation p.A58T 0.29 tolerated(0.6) possibly_damaging(0.557) TCGA-GN-A4U5-01 9 17789459 17789459 C T SH3GL2 Missense_Mutation p.P179S 0.48 tolerated(0.22) benign(0.051) TCGA-GN-A4U5-01 9 39103801 39103801 A T CNTNAP3 Missense_Mutation p.S826T 0.35 tolerated(0.45) probably_damaging(0.917) TCGA-GN-A4U5-01 9 8319907 8319907 C T PTPRD Missense_Mutation p.R1865K 0.54 deleterious(0) probably_damaging(0.913) TCGA-GN-A4U5-01 X 101152914 101152914 G A ZMAT1 Silent p.V144V 0.21 TCGA-GN-A4U5-01 X 10188767 10188767 C T CLCN4 Missense_Mutation p.P681L 0.20 tolerated(0.1) benign(0.172) TCGA-GN-A4U5-01 X 10188768 10188768 C T CLCN4 Silent p.P681P 0.19 TCGA-GN-A4U5-01 X 107834815 107834815 C T COL4A5 Missense_Mutation p.P455L 0.17 unknown(0) TCGA-GN-A4U5-01 X 109459772 109459772 C T AMMECR1 Missense_Mutation p.D225N 0.24 deleterious(0) benign(0.261) TCGA-GN-A4U5-01 X 124030022 124030022 G A TENM1 Missense_Mutation p.R96W 0.21 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-GN-A4U5-01 X 130222768 130222768 C T ARHGAP36 3'UTR 0.32 TCGA-GN-A4U5-01 X 14861670 14861670 G A FANCB 3'UTR 0.17 TCGA-GN-A4U5-01 X 148797769 148797769 C T MAGEA11 Missense_Mutation p.S208L 0.21 tolerated(0.37) benign(0.047) TCGA-GN-A4U5-01 X 150868980 150868980 G A PRRG3 Missense_Mutation p.M57I 0.20 tolerated(0.14) possibly_damaging(0.844) TCGA-GN-A4U5-01 X 15381283 15381283 G A FIGF Silent p.S83S 0.26 TCGA-GN-A4U5-01 X 3227796 3227796 G A MXRA5 Silent p.L2816L 0.15 TCGA-GN-A4U5-01 X 34149834 34149834 A T FAM47A Missense_Mutation p.C188S 0.23 tolerated(0.43) probably_damaging(0.962) TCGA-GN-A4U5-01 X 34149835 34149835 G A FAM47A Silent p.F187F 0.22 TCGA-GN-A4U5-01 X 41782196 41782196 C T CASK Missense_Mutation p.E16K 0.26 tolerated(0.14) benign(0.345) TCGA-GN-A4U5-01 X 41782280 41782280 G A CASK 5'Flank 0.23 TCGA-GN-A4U5-01 X 48688025 48688025 C T ERAS Silent p.A164A 0.35 TCGA-GN-A4U5-01 X 48755059 48755059 G A TIMM17B 5'UTR 0.15 TCGA-GN-A4U5-01 X 54011462 54011462 C T PHF8 Silent p.G812G 0.28 TCGA-GN-A4U5-01 X 57367775 57367775 C T FAAH2 Nonsense_Mutation p.R232* 0.23 TCGA-GN-A4U5-01 X 57935899 57935899 C G ZXDA Missense_Mutation p.R319T 0.25 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U5-01 X 65486456 65486456 G A HEPH Missense_Mutation p.R1194Q 0.26 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GN-A4U5-01 X 70525032 70525032 T G ITGB1BP2 Missense_Mutation p.M345R 0.44 deleterious_low_confidence(0) unknown(0) TCGA-GN-A4U5-01 X 70525049 70525049 C G ITGB1BP2 3'UTR 0.30 TCGA-GN-A4U5-01 X 71351063 71351063 C T RGAG4 Missense_Mutation p.D110N 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GN-A4U5-01 X 77913722 77913722 C T ZCCHC5 Missense_Mutation p.E66K 0.17 tolerated(0.17) benign(0.052) TCGA-GN-A4U5-01 X 7811252 7811252 C T VCX Missense_Mutation p.P3L 0.11 deleterious_low_confidence(0) unknown(0) TCGA-GN-A4U5-01 X 78426999 78426999 G A GPR174 Silent p.R165R 0.19 TCGA-GN-A4U7-06 10 104174954 104174954 G A PSD Missense_Mutation p.P264S 0.30 tolerated(0.13) benign(0) TCGA-GN-A4U7-06 10 112838012 112838012 C T ADRA2A Silent p.F86F 0.36 TCGA-GN-A4U7-06 10 123842581 123842581 C T TACC2 Missense_Mutation p.S189F 0.56 benign(0.014) TCGA-GN-A4U7-06 10 123842582 123842582 C T TACC2 Silent p.S189S 0.58 TCGA-GN-A4U7-06 10 124457907 124457907 G A C10orf120 Missense_Mutation p.P117L 0.54 tolerated(0.11) benign(0.115) TCGA-GN-A4U7-06 10 129899738 129899738 C T MKI67 Silent p.E3163E 0.44 TCGA-GN-A4U7-06 10 43692427 43692427 C T RASGEF1A Missense_Mutation p.E449K 0.42 deleterious(0.04) benign(0.017) TCGA-GN-A4U7-06 10 52610567 52610567 C T A1CF Intron 0.54 TCGA-GN-A4U7-06 10 61958165 61958165 C T ANK3 Missense_Mutation p.R541Q 0.49 probably_damaging(0.993) TCGA-GN-A4U7-06 10 71868922 71868922 G A H2AFY2 Silent p.K304K 0.32 TCGA-GN-A4U7-06 10 79579661 79579661 G A DLG5 Missense_Mutation p.P1173L 0.30 tolerated(0.67) benign(0.011) TCGA-GN-A4U7-06 10 79579662 79579662 G A DLG5 Missense_Mutation p.P1173S 0.30 tolerated(0.42) benign(0.011) TCGA-GN-A4U7-06 10 99150236 99150236 C T RRP12 Missense_Mutation p.V233M 0.52 tolerated(0.09) benign(0.011) TCGA-GN-A4U7-06 11 1097824 1097824 C T MUC2 Missense_Mutation p.T2306I 0.82 unknown(0) TCGA-GN-A4U7-06 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.82 tolerated(1) benign(0) TCGA-GN-A4U7-06 11 124845094 124845094 C T CCDC15 Missense_Mutation p.L207F 0.75 deleterious(0) benign(0.292) TCGA-GN-A4U7-06 11 45987052 45987052 G A PHF21A Silent p.F269F 0.60 TCGA-GN-A4U7-06 11 49179561 49179561 G A FOLH1 Missense_Mutation p.S492F 0.48 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U7-06 11 57313487 57313487 G T SMTNL1 Missense_Mutation p.A369S 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A4U7-06 11 64876943 64876943 C A VPS51 Silent p.L545L 0.48 TCGA-GN-A4U7-06 11 74009388 74009388 C T P4HA3 Missense_Mutation p.D196N 0.67 deleterious(0.03) possibly_damaging(0.742) TCGA-GN-A4U7-06 11 76893588 76893588 G A MYO7A Silent p.E1076E 0.70 TCGA-GN-A4U7-06 11 78443553 78443553 C T TENM4 Silent p.Q982Q 0.29 TCGA-GN-A4U7-06 11 92534372 92534372 G A FAT3 Silent p.R2731R 0.20 TCGA-GN-A4U7-06 12 10569334 10569334 C T KLRC3 Nonsense_Mutation p.W173* 0.47 TCGA-GN-A4U7-06 12 111317745 111317745 T C CCDC63 Silent p.N175N 0.42 TCGA-GN-A4U7-06 12 112460034 112460034 C T ERP29 Missense_Mutation p.R122W 0.41 tolerated(0.19) benign(0.009) TCGA-GN-A4U7-06 12 118199219 118199219 G A KSR2 Missense_Mutation p.L195F 0.44 tolerated(0.07) benign(0.361) TCGA-GN-A4U7-06 12 119617291 119617291 C T HSPB8 Silent p.S58S 0.46 TCGA-GN-A4U7-06 12 121858571 121858571 C T RNF34 Silent p.N307N 0.39 TCGA-GN-A4U7-06 12 123746253 123746253 G A CDK2AP1 3'UTR 0.34 TCGA-GN-A4U7-06 12 133732292 133732292 C A ZNF10 Missense_Mutation p.Q154K 0.12 tolerated(0.34) benign(0.001) TCGA-GN-A4U7-06 12 13906829 13906829 G A GRIN2B Silent p.F144F 0.39 TCGA-GN-A4U7-06 12 18891656 18891656 A T CAPZA3 Missense_Mutation p.I152L 0.17 tolerated(0.14) benign(0.023) TCGA-GN-A4U7-06 12 21069125 21069125 G A SLCO1B3 Missense_Mutation p.G685R 0.49 tolerated(0.56) benign(0.004) TCGA-GN-A4U7-06 12 40044134 40044134 A G C12orf40 Missense_Mutation p.T222A 0.42 tolerated(0.3) benign(0.023) TCGA-GN-A4U7-06 12 48367872 48367872 C T COL2A1 Silent p.T1439T 0.44 TCGA-GN-A4U7-06 12 49110387 49110387 G A CCNT1 Silent p.S24S 0.37 TCGA-GN-A4U7-06 12 54922110 54922110 C T NCKAP1L Missense_Mutation p.P819S 0.39 tolerated(0.3) benign(0.223) TCGA-GN-A4U7-06 12 7637785 7637785 G A CD163 Missense_Mutation p.P896S 0.47 tolerated(0.08) possibly_damaging(0.718) TCGA-GN-A4U7-06 12 7942102 7942102 C T NANOG 5'UTR 0.33 TCGA-GN-A4U7-06 12 81675116 81675116 G T PPFIA2 Nonsense_Mutation p.C1044* 0.45 TCGA-GN-A4U7-06 13 42772653 42772653 C T DGKH Missense_Mutation p.S736L 0.58 deleterious(0.01) possibly_damaging(0.506) TCGA-GN-A4U7-06 13 52650225 52650225 T A NEK5 Missense_Mutation p.N568Y 0.64 deleterious(0.04) benign(0.095) TCGA-GN-A4U7-06 13 67801047 67801047 C T PCDH9 Missense_Mutation p.G509E 0.49 tolerated(0.32) probably_damaging(0.98) TCGA-GN-A4U7-06 13 67801048 67801048 C T PCDH9 Missense_Mutation p.G509R 0.48 tolerated(0.06) probably_damaging(0.995) TCGA-GN-A4U7-06 14 101492103 101492103 C T MIR323A RNA 0.40 TCGA-GN-A4U7-06 14 21109121 21109121 A C OR6S1 Missense_Mutation p.C244G 0.41 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U7-06 14 21966419 21966422 TAGA - METTL3 Frame_Shift_Del p.S575Nfs*13 0.29 TCGA-GN-A4U7-06 14 22037966 22037966 G A OR10G3 Missense_Mutation p.L304F 0.42 tolerated(0.12) benign(0.035) TCGA-GN-A4U7-06 14 24031578 24031578 G A AP1G2 Missense_Mutation p.S516F 0.49 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U7-06 14 24896843 24896843 C T CBLN3 3'UTR 0.51 TCGA-GN-A4U7-06 14 31071212 31071212 C A G2E3 Missense_Mutation p.F295L 0.54 tolerated(0.44) benign(0.22) TCGA-GN-A4U7-06 14 50116916 50116916 T A POLE2 Intron 0.50 TCGA-GN-A4U7-06 14 52535546 52535546 G A NID2 Missense_Mutation p.S56L 0.36 deleterious(0) possibly_damaging(0.484) TCGA-GN-A4U7-06 14 88417024 88417024 G A GALC Silent p.T410T 0.41 TCGA-GN-A4U7-06 14 94046498 94046498 G A UNC79 Missense_Mutation p.E636K 0.32 deleterious(0) benign(0.35) TCGA-GN-A4U7-06 15 20170146 20170146 C T IGHV1OR15-9 Silent p.K42K 0.50 TCGA-GN-A4U7-06 15 22382915 22382915 T C OR4N4 Missense_Mutation p.L148P 0.48 tolerated(0.08) benign(0.084) TCGA-GN-A4U7-06 15 43821986 43821986 A G MAP1A Missense_Mutation p.N2725S 0.38 probably_damaging(0.991) TCGA-GN-A4U7-06 15 52356806 52356806 C T MAPK6 Missense_Mutation p.S592F 0.41 tolerated_low_confidence(0.07) possibly_damaging(0.642) TCGA-GN-A4U7-06 15 65223865 65223865 C T ANKDD1A Intron 0.38 TCGA-GN-A4U7-06 15 65502060 65502060 G A CILP Silent p.L12L 0.45 TCGA-GN-A4U7-06 15 65918056 65918056 C T SLC24A1 Silent p.F546F 0.50 TCGA-GN-A4U7-06 15 90210254 90210254 G A PLIN1 Silent p.S374S 0.51 TCGA-GN-A4U7-06 16 10273957 10273957 C T GRIN2A Silent p.T104T 0.46 TCGA-GN-A4U7-06 16 10855210 10855210 C T NUBP1 Intron 0.55 TCGA-GN-A4U7-06 16 24964293 24964293 G A ARHGAP17 Missense_Mutation p.S308F 0.46 tolerated(0.55) probably_damaging(0.965) TCGA-GN-A4U7-06 16 27224962 27224962 C T KDM8 Silent p.P223P 0.37 TCGA-GN-A4U7-06 16 27224963 27224963 C T KDM8 Missense_Mutation p.R224W 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-GN-A4U7-06 16 27761264 27761270 GGAATAG AAAATAA KIAA0556 Missense_Mutation p.GIE995KIK 0.12 TCGA-GN-A4U7-06 16 30129473 30129473 G A MAPK3 Silent p.F185F 0.36 TCGA-GN-A4U7-06 16 3065465 3065465 G A CLDN6 Silent p.P186P 0.37 TCGA-GN-A4U7-06 16 3065466 3065466 G A CLDN6 Missense_Mutation p.P186L 0.37 deleterious(0) benign(0.434) TCGA-GN-A4U7-06 16 30768806 30768806 C T C16orf93 Silent p.K329K 0.44 TCGA-GN-A4U7-06 16 30768807 30768807 T A C16orf93 Missense_Mutation p.K329M 0.43 deleterious(0) probably_damaging(0.991) TCGA-GN-A4U7-06 16 3085469 3085469 G A CCDC64B Missense_Mutation p.P10L 0.39 tolerated(0.17) unknown(0) TCGA-GN-A4U7-06 16 3085470 3085470 G A CCDC64B Missense_Mutation p.P10S 0.38 deleterious(0.05) unknown(0) TCGA-GN-A4U7-06 16 31414954 31414954 T A ITGAD Missense_Mutation p.I231N 0.12 deleterious(0) probably_damaging(0.986) TCGA-GN-A4U7-06 16 3304693 3304693 C A MEFV Missense_Mutation p.E125D 0.34 tolerated(0.32) benign(0.094) TCGA-GN-A4U7-06 16 57465147 57465147 G A CIAPIN1 Missense_Mutation p.P221L 0.45 deleterious(0.04) benign(0.011) TCGA-GN-A4U7-06 16 57938642 57938642 C T CNGB1 Missense_Mutation p.G877E 0.40 deleterious(0) probably_damaging(0.994) TCGA-GN-A4U7-06 16 58621104 58621104 C T CNOT1 Splice_Site p.X145_splice 0.36 TCGA-GN-A4U7-06 16 68011630 68011630 T G DPEP3 Missense_Mutation p.I312L 0.29 deleterious(0.02) probably_damaging(0.921) TCGA-GN-A4U7-06 16 68373720 68373720 C T PRMT7 Missense_Mutation p.S259L 0.41 tolerated(0.4) benign(0.001) TCGA-GN-A4U7-06 16 70162917 70162917 C T PDPR Missense_Mutation p.H167Y 0.15 deleterious(0) benign(0.049) TCGA-GN-A4U7-06 16 71571018 71571018 C T CHST4 Silent p.I146I 0.52 TCGA-GN-A4U7-06 16 72188353 72188353 C T PMFBP1 Silent p.K57K 0.43 TCGA-GN-A4U7-06 16 77387774 77387774 C T ADAMTS18 Silent p.Q490Q 0.46 TCGA-GN-A4U7-06 16 839607 839607 C T CHTF18 Silent p.P166P 0.34 TCGA-GN-A4U7-06 17 11550485 11550485 G A DNAH9 Silent p.T689T 0.46 TCGA-GN-A4U7-06 17 12647616 12647616 C A MYOCD Silent p.S278S 0.49 TCGA-GN-A4U7-06 17 21206546 21206546 G A MAP2K3 Missense_Mutation p.D190N 0.16 deleterious(0) probably_damaging(0.975) TCGA-GN-A4U7-06 17 26925653 26925653 C T SPAG5 Missense_Mutation p.G18R 0.43 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-GN-A4U7-06 17 39471682 39471682 C G KRTAP17-1 Missense_Mutation p.G74A 0.35 unknown(0) TCGA-GN-A4U7-06 17 48154808 48154808 G A ITGA3 Silent p.Q712Q 0.43 TCGA-GN-A4U7-06 17 55068477 55068477 C T SCPEP1 Silent p.T188T 0.39 TCGA-GN-A4U7-06 17 56291167 56291167 G A MKS1 Silent p.I236I 0.41 TCGA-GN-A4U7-06 17 62856553 62856553 G A LRRC37A3 Silent p.F1237F 0.40 TCGA-GN-A4U7-06 17 64876733 64876733 T C CACNG5 Missense_Mutation p.F115L 0.49 tolerated(0.23) benign(0.314) TCGA-GN-A4U7-06 17 65341905 65341905 G A PSMD12 Silent p.H288H 0.44 TCGA-GN-A4U7-06 17 74053552 74053552 G A SRP68 Missense_Mutation p.P304S 0.40 tolerated(0.23) possibly_damaging(0.495) TCGA-GN-A4U7-06 17 7612675 7612675 C T EFNB3 Silent p.S268S 0.40 TCGA-GN-A4U7-06 17 8194751 8194751 A T SLC25A35 Nonsense_Mutation p.L165* 0.42 TCGA-GN-A4U7-06 18 28576947 28576947 C T DSC3 Missense_Mutation p.G768E 0.40 deleterious(0) probably_damaging(0.972) TCGA-GN-A4U7-06 18 47095874 47095874 G A LIPG Missense_Mutation p.G176E 0.51 deleterious(0) probably_damaging(1) TCGA-GN-A4U7-06 18 48327809 48327809 C T MRO Silent p.R179R 0.49 TCGA-GN-A4U7-06 19 10738633 10738633 C T SLC44A2 Silent p.P66P 0.47 TCGA-GN-A4U7-06 19 12817567 12817567 G C TNPO2 Missense_Mutation p.P438R 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-GN-A4U7-06 19 13988377 13988377 C T NANOS3 Silent p.P105P 0.28 TCGA-GN-A4U7-06 19 19349160 19349160 C T NCAN Missense_Mutation p.R1117C 0.45 deleterious(0) probably_damaging(0.966) TCGA-GN-A4U7-06 19 22235358 22235358 C A ZNF257 5'UTR 0.48 TCGA-GN-A4U7-06 19 34891070 34891070 C T GPI 3'UTR 0.40 TCGA-GN-A4U7-06 19 34891071 34891071 C T GPI 3'UTR 0.40 TCGA-GN-A4U7-06 19 35420854 35420854 G A ZNF30 Translation_Start_Site p.M1? 0.20 tolerated(0.05) benign(0.043) TCGA-GN-A4U7-06 19 35420855 35420855 G A ZNF30 Missense_Mutation p.A2T 0.20 tolerated(0.09) possibly_damaging(0.682) TCGA-GN-A4U7-06 19 36108240 36108240 C T HAUS5 Silent p.L203L 0.34 TCGA-GN-A4U7-06 19 36304172 36304172 C T PRODH2 Silent p.R4R 0.36 TCGA-GN-A4U7-06 19 39396030 39396030 C T NFKBIB Silent p.P158P 0.47 TCGA-GN-A4U7-06 19 40433553 40433553 A G FCGBP Missense_Mutation p.V239A 0.39 benign(0.164) TCGA-GN-A4U7-06 19 41075606 41075606 G A SPTBN4 Missense_Mutation p.E2334K 0.38 deleterious(0.02) possibly_damaging(0.678) TCGA-GN-A4U7-06 19 42563530 42563530 C T GRIK5 Missense_Mutation p.A220T 0.41 tolerated(0.46) benign(0.014) TCGA-GN-A4U7-06 19 44679946 44679946 C T ZNF226 Silent p.F177F 0.43 TCGA-GN-A4U7-06 19 44679947 44679947 C T ZNF226 Silent p.L178L 0.47 TCGA-GN-A4U7-06 19 45593517 45593517 G A GEMIN7 Missense_Mutation p.E49K 0.43 tolerated(0.36) benign(0.022) TCGA-GN-A4U7-06 19 46288929 46288929 G A AC011530.4 Missense_Mutation p.L15F 0.40 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GN-A4U7-06 19 46288930 46288930 G A AC011530.4 Silent p.V14V 0.39 TCGA-GN-A4U7-06 19 46522222 46522222 G A CCDC61 3'Flank 0.37 TCGA-GN-A4U7-06 19 4891505 4891505 C T ARRDC5 Missense_Mutation p.M194I 0.47 deleterious(0.02) benign(0.076) TCGA-GN-A4U7-06 19 49247794 49247794 C T IZUMO1 Missense_Mutation p.D105N 0.46 tolerated(0.07) benign(0.006) TCGA-GN-A4U7-06 19 49910142 49910142 G A CCDC155 Splice_Site p.X267_splice 0.48 TCGA-GN-A4U7-06 19 50662765 50662765 G A IZUMO2 Missense_Mutation p.S127L 0.38 deleterious(0.03) possibly_damaging(0.504) TCGA-GN-A4U7-06 19 51919939 51919939 G C SIGLEC10 Silent p.T229T 0.42 TCGA-GN-A4U7-06 19 52149535 52149535 C T SIGLEC14 Silent p.Q132Q 0.67 TCGA-GN-A4U7-06 19 52393849 52393849 T G ZNF649 3'UTR 0.39 TCGA-GN-A4U7-06 19 53005084 53005084 G A ZNF578 5'UTR 0.45 TCGA-GN-A4U7-06 19 53344021 53344021 G A ZNF468 Missense_Mutation p.S509F 0.42 tolerated(0.57) benign(0.01) TCGA-GN-A4U7-06 19 55992601 55992601 C T ZNF628 Missense_Mutation p.P14L 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-GN-A4U7-06 19 56423973 56423973 C T NLRP13 Missense_Mutation p.E404K 0.50 tolerated(1) benign(0.001) TCGA-GN-A4U7-06 19 56599601 56599601 C T ZNF787 Missense_Mutation p.E314K 0.32 tolerated(1) probably_damaging(0.953) TCGA-GN-A4U7-06 19 56599602 56599602 C T ZNF787 Silent p.E313E 0.33 TCGA-GN-A4U7-06 19 57066801 57066801 A T ZFP28 3'UTR 0.51 TCGA-GN-A4U7-06 19 57646651 57646651 C T ZIM3 Missense_Mutation p.D352N 0.47 tolerated(0.51) probably_damaging(0.97) TCGA-GN-A4U7-06 19 57746804 57746804 C T AURKC 3'UTR 0.35 TCGA-GN-A4U7-06 19 6825346 6825346 G A VAV1 Silent p.K252K 0.37 TCGA-GN-A4U7-06 19 687185 687185 T G PRSS57 Missense_Mutation p.N129H 0.23 deleterious(0) possibly_damaging(0.876) TCGA-GN-A4U7-06 19 900088 900088 G A R3HDM4 Silent p.A178A 0.32 TCGA-GN-A4U7-06 19 900089 900089 G A R3HDM4 Missense_Mutation p.A178V 0.33 tolerated(0.2) benign(0.062) TCGA-GN-A4U7-06 19 9063580 9063580 C T MUC16 Missense_Mutation p.D7956N 0.47 unknown(0) TCGA-GN-A4U7-06 19 9066398 9066398 G A MUC16 Silent p.L7016L 0.43 TCGA-GN-A4U7-06 19 9213734 9213734 G A OR7G2 Silent p.F83F 0.45 TCGA-GN-A4U7-06 1 11151617 11151617 T A EXOSC10 Missense_Mutation p.N137I 0.33 deleterious(0) possibly_damaging(0.522) TCGA-GN-A4U7-06 1 1140968 1140968 T C TNFRSF18 Intron 0.57 TCGA-GN-A4U7-06 1 119456780 119456780 C T TBX15 Missense_Mutation p.R189Q 0.35 deleterious(0) benign(0.42) TCGA-GN-A4U7-06 1 148932838 148932838 G A RP11-14N7.2 RNA 0.10 TCGA-GN-A4U7-06 1 152129196 152129196 C T RPTN Missense_Mutation p.E127K 0.32 tolerated(0.71) benign(0.005) TCGA-GN-A4U7-06 1 158300844 158300844 C T CD1B Missense_Mutation p.G24R 0.30 deleterious(0.04) benign(0.134) TCGA-GN-A4U7-06 1 160000284 160000284 G A PIGM Silent p.L416L 0.55 TCGA-GN-A4U7-06 1 164769116 164769116 C T PBX1 Silent p.L231L 0.67 TCGA-GN-A4U7-06 1 167794010 167794010 G A ADCY10 Silent p.A1278A 0.59 TCGA-GN-A4U7-06 1 176679284 176679284 C T PAPPA2 Missense_Mutation p.S1208F 0.59 tolerated(0.64) benign(0.387) TCGA-GN-A4U7-06 1 181754944 181754944 C T CACNA1E Silent p.P1925P 0.29 TCGA-GN-A4U7-06 1 183849803 183849803 G A RGL1 Missense_Mutation p.R195Q 0.59 tolerated(0.29) benign(0.269) TCGA-GN-A4U7-06 1 183885614 183885614 C T RGL1 Missense_Mutation p.H630Y 0.31 tolerated(1) possibly_damaging(0.521) TCGA-GN-A4U7-06 1 18809175 18809175 G A KLHDC7A Missense_Mutation p.G567E 0.45 deleterious(0.03) benign(0.166) TCGA-GN-A4U7-06 1 18809176 18809176 G A KLHDC7A Silent p.G567G 0.43 TCGA-GN-A4U7-06 1 20005724 20005724 G A HTR6 Missense_Mutation p.A396T 0.58 tolerated(0.32) benign(0.001) TCGA-GN-A4U7-06 1 220284153 220284153 G T IARS2 Missense_Mutation p.K451N 0.06 tolerated(0.16) benign(0.031) TCGA-GN-A4U7-06 1 225591019 225591019 G A LBR Missense_Mutation p.P612S 0.57 deleterious(0) probably_damaging(1) TCGA-GN-A4U7-06 1 23233360 23233360 C T EPHB2 Silent p.V683V 0.47 TCGA-GN-A4U7-06 1 24018301 24018301 C T RPL11 5'UTR 0.40 TCGA-GN-A4U7-06 1 247769211 247769211 C T OR2G3 Silent p.G108G 0.61 TCGA-GN-A4U7-06 1 248512918 248512918 C T OR14C36 Missense_Mutation p.P281L 0.25 deleterious(0.01) possibly_damaging(0.833) TCGA-GN-A4U7-06 1 29323784 29323784 G A EPB41 Missense_Mutation p.E247K 0.42 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U7-06 1 43777999 43777999 G A TIE1 Missense_Mutation p.E552K 0.49 tolerated(0.19) benign(0.287) TCGA-GN-A4U7-06 1 43825262 43825262 C T CDC20 Silent p.L95L 0.45 TCGA-GN-A4U7-06 1 43916981 43916981 T A HYI Silent p.G254G 0.41 TCGA-GN-A4U7-06 1 52838931 52838931 G A ORC1 Silent p.P836P 0.40 TCGA-GN-A4U7-06 1 55060287 55060287 C T ACOT11 Missense_Mutation p.A177V 0.10 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U7-06 20 21492584 21492584 G A NKX2-2 Nonsense_Mutation p.Q267* 0.38 TCGA-GN-A4U7-06 20 2596821 2596821 G A TMC2 Silent p.L637L 0.43 TCGA-GN-A4U7-06 20 29633979 29633979 G A FRG1B 3'UTR 0.07 TCGA-GN-A4U7-06 20 32264636 32264636 G A E2F1 Missense_Mutation p.H406Y 0.80 tolerated(1) benign(0.333) TCGA-GN-A4U7-06 20 32264637 32264637 G A E2F1 Silent p.P405P 0.80 TCGA-GN-A4U7-06 20 41101041 41101041 C T PTPRT Missense_Mutation p.E439K 0.44 tolerated(0.42) benign(0.071) TCGA-GN-A4U7-06 20 44670091 44670091 C T SLC12A5 Silent p.F349F 0.47 TCGA-GN-A4U7-06 20 47887258 47887258 C T ZNFX1 Missense_Mutation p.S364N 0.30 tolerated(0.44) benign(0.007) TCGA-GN-A4U7-06 20 55027511 55027511 G A CASS4 Missense_Mutation p.E427K 0.32 deleterious(0.01) possibly_damaging(0.641) TCGA-GN-A4U7-06 20 61512110 61512110 G A DIDO1 Missense_Mutation p.T1733I 0.63 benign(0.115) TCGA-GN-A4U7-06 20 61512921 61512921 G A DIDO1 Missense_Mutation p.P1463S 0.64 benign(0.006) TCGA-GN-A4U7-06 20 62197524 62197524 G A HELZ2 Missense_Mutation p.P884L 0.17 tolerated(0.32) benign(0.081) TCGA-GN-A4U7-06 20 62197525 62197525 G A HELZ2 Missense_Mutation p.P884S 0.17 tolerated(1) benign(0.057) TCGA-GN-A4U7-06 21 10862902 10862902 G A IGHV1OR21-1 Nonsense_Mutation p.W66* 0.31 TCGA-GN-A4U7-06 21 37442783 37442783 C T CBR1 Intron 0.50 TCGA-GN-A4U7-06 21 37442784 37442784 C T CBR1 Intron 0.50 TCGA-GN-A4U7-06 21 41447102 41447102 C T DSCAM Missense_Mutation p.E1584K 0.84 tolerated(0.4) benign(0.003) TCGA-GN-A4U7-06 22 22318362 22318362 C T TOP3B Silent p.R379R 0.29 TCGA-GN-A4U7-06 22 22318363 22318363 C T TOP3B Missense_Mutation p.R379Q 0.29 deleterious(0.04) possibly_damaging(0.473) TCGA-GN-A4U7-06 22 39479784 39479784 T C APOBEC3G Silent p.P210P 0.27 TCGA-GN-A4U7-06 2 103281714 103281714 C T SLC9A2 Silent p.T303T 0.44 TCGA-GN-A4U7-06 2 119914397 119914397 A T C1QL2 Missense_Mutation p.F282Y 0.46 deleterious(0.02) probably_damaging(0.951) TCGA-GN-A4U7-06 2 121043649 121043649 C T RALB Missense_Mutation p.A105V 0.49 tolerated(0.3) benign(0.001) TCGA-GN-A4U7-06 2 125521355 125521355 C T CNTNAP5 Missense_Mutation p.P780S 0.48 tolerated(0.05) possibly_damaging(0.839) TCGA-GN-A4U7-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.54 tolerated(0.66) probably_damaging(0.964) TCGA-GN-A4U7-06 2 139428435 139428435 T A NXPH2 3'UTR 0.44 TCGA-GN-A4U7-06 2 152514587 152514587 G A NEB Silent p.S2031S 0.56 TCGA-GN-A4U7-06 2 160729052 160729052 C T LY75-CD302 Missense_Mutation p.R676Q 0.40 deleterious(0.05) probably_damaging(0.947) TCGA-GN-A4U7-06 2 173352085 173352085 C T ITGA6 Silent p.P688P 0.52 TCGA-GN-A4U7-06 2 180634402 180634402 C T ZNF385B Silent p.E27E 0.42 TCGA-GN-A4U7-06 2 21229268 21229268 G A APOB Missense_Mutation p.S3491F 0.44 possibly_damaging(0.68) TCGA-GN-A4U7-06 2 21232695 21232695 C T APOB Missense_Mutation p.E2349K 0.51 benign(0.257) TCGA-GN-A4U7-06 2 219486275 219486275 C T PLCD4 Silent p.L165L 0.44 TCGA-GN-A4U7-06 2 220399924 220399924 C T ASIC4 Silent p.C477C 0.40 TCGA-GN-A4U7-06 2 227729454 227729454 C T RHBDD1 Silent p.L15L 0.40 TCGA-GN-A4U7-06 2 227729455 227729455 C T RHBDD1 Missense_Mutation p.L16F 0.41 tolerated(0.24) benign(0.007) TCGA-GN-A4U7-06 2 230910901 230910901 C T SLC16A14 Missense_Mutation p.R314Q 0.33 tolerated(0.19) possibly_damaging(0.746) TCGA-GN-A4U7-06 2 231162144 231162144 G A SP140 Silent p.L675L 0.42 TCGA-GN-A4U7-06 2 232602838 232602838 G A PDE6D Silent p.P50P 0.37 TCGA-GN-A4U7-06 2 234394515 234394515 G A USP40 Silent p.S1113S 0.48 TCGA-GN-A4U7-06 2 234591368 234591368 C T UGT1A7 Missense_Mutation p.P262L 0.35 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U7-06 2 27721647 27721647 C T GCKR Silent p.L137L 0.50 TCGA-GN-A4U7-06 2 61304111 61304111 C T KIAA1841 Missense_Mutation p.T163I 0.46 tolerated(0.5) benign(0) TCGA-GN-A4U7-06 2 69204835 69204835 G T GKN1 Nonsense_Mutation p.E59* 0.46 TCGA-GN-A4U7-06 2 71740914 71740914 C T DYSF Nonsense_Mutation p.Q208* 0.42 TCGA-GN-A4U7-06 2 86267562 86267562 G A POLR1A Silent p.F1231F 0.47 TCGA-GN-A4U7-06 2 88887529 88887529 C T EIF2AK3 Missense_Mutation p.G467D 0.38 deleterious(0.02) probably_damaging(0.946) TCGA-GN-A4U7-06 2 89292166 89292166 C T IGKV1-8 Missense_Mutation p.G36E 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-GN-A4U7-06 2 90077776 90077778 CAT - IGKV3D-20 Missense_Mutation 0.37 TCGA-GN-A4U7-06 3 113376793 113376793 G A KIAA2018 Missense_Mutation p.H1246Y 0.48 probably_damaging(0.997) TCGA-GN-A4U7-06 3 122003771 122003771 G A CASR Silent p.R1000R 0.48 TCGA-GN-A4U7-06 3 125249302 125249302 G A OSBPL11 3'UTR 0.45 TCGA-GN-A4U7-06 3 127411100 127411100 C T MGLL Missense_Mutation p.E295K 0.40 deleterious(0) possibly_damaging(0.902) TCGA-GN-A4U7-06 3 136088003 136088003 C T STAG1 Missense_Mutation p.S831N 0.52 tolerated(0.43) benign(0.001) TCGA-GN-A4U7-06 3 160395727 160395727 C T ARL14 3'UTR 0.46 TCGA-GN-A4U7-06 3 167250699 167250699 G A WDR49 Missense_Mutation p.P322L 0.46 tolerated(0.27) benign(0.055) TCGA-GN-A4U7-06 3 167507022 167507022 C T SERPINI1 Missense_Mutation p.R36C 0.48 tolerated(0.13) benign(0.394) TCGA-GN-A4U7-06 3 168834204 168834204 C T MECOM Missense_Mutation p.G363R 0.38 deleterious(0.03) probably_damaging(0.972) TCGA-GN-A4U7-06 3 17052040 17052040 C T PLCL2 Missense_Mutation p.S275F 0.40 deleterious(0) probably_damaging(0.961) TCGA-GN-A4U7-06 3 17052041 17052041 C T PLCL2 Silent p.S275S 0.39 TCGA-GN-A4U7-06 3 18393610 18393610 C T SATB1 Missense_Mutation p.M551I 0.44 tolerated(0.07) probably_damaging(0.974) TCGA-GN-A4U7-06 3 185337174 185337174 C T SENP2 Missense_Mutation p.P444S 0.31 tolerated(0.16) probably_damaging(0.999) TCGA-GN-A4U7-06 3 39228673 39228673 G A XIRP1 Missense_Mutation p.P755L 0.49 tolerated(0.06) benign(0.008) TCGA-GN-A4U7-06 3 44763753 44763753 C T ZNF502 Missense_Mutation p.H482Y 0.33 deleterious(0.04) possibly_damaging(0.811) TCGA-GN-A4U7-06 3 45153717 45153717 C A CDCP1 Silent p.V171V 0.40 TCGA-GN-A4U7-06 3 49737904 49737904 G A RNF123 Splice_Site p.X371_splice 0.40 TCGA-GN-A4U7-06 3 49737905 49737905 G A RNF123 Missense_Mutation p.D371N 0.39 tolerated(0.07) benign(0.196) TCGA-GN-A4U7-06 3 51267026 51267026 G A DOCK3 Missense_Mutation p.E635K 0.47 deleterious(0.05) benign(0.342) TCGA-GN-A4U7-06 3 51864784 51864784 G C IQCF3 Missense_Mutation p.Q144H 0.33 tolerated(0.32) benign(0) TCGA-GN-A4U7-06 3 57154294 57154294 G A IL17RD Silent p.F58F 0.35 TCGA-GN-A4U7-06 3 97983881 97983881 A G OR5H6 Silent p.R251R 0.28 TCGA-GN-A4U7-06 4 100480508 100480508 C T TRMT10A Splice_Site 0.41 TCGA-GN-A4U7-06 4 105393494 105393494 G A CXXC4 Silent p.F363F 0.41 TCGA-GN-A4U7-06 4 109782121 109782121 G A COL25A1 Missense_Mutation p.R402C 0.43 deleterious(0.03) probably_damaging(0.935) TCGA-GN-A4U7-06 4 126240964 126240964 G A FAT4 Missense_Mutation p.G1133E 0.44 possibly_damaging(0.899) TCGA-GN-A4U7-06 4 185138840 185138840 C T ENPP6 Missense_Mutation p.E45K 0.40 tolerated(0.27) benign(0.328) TCGA-GN-A4U7-06 4 22475441 22475441 C T GPR125 Missense_Mutation p.E95K 0.12 tolerated(0.84) possibly_damaging(0.747) TCGA-GN-A4U7-06 4 25677918 25677918 C T SLC34A2 Silent p.I540I 0.42 TCGA-GN-A4U7-06 4 52861777 52861777 G A LRRC66 Missense_Mutation p.P471S 0.45 tolerated(0.36) benign(0.052) TCGA-GN-A4U7-06 4 71347468 71347468 C T MUC7 Missense_Mutation p.S336L 0.44 tolerated_low_confidence(0.39) unknown(0) TCGA-GN-A4U7-06 4 72618250 72618250 A T GC Silent p.L479L 0.38 TCGA-GN-A4U7-06 5 118969934 118969934 C T FAM170A Missense_Mutation p.S164F 0.38 tolerated(0.1) benign(0.096) TCGA-GN-A4U7-06 5 13920608 13920608 C T DNAH5 Nonsense_Mutation p.W260* 0.44 TCGA-GN-A4U7-06 5 1394773 1394773 G A SLC6A3 3'UTR 0.40 TCGA-GN-A4U7-06 5 140215877 140215877 C T PCDHA7 Silent p.L637L 0.75 TCGA-GN-A4U7-06 5 149439322 149439322 C T CSF1R Silent p.Q691Q 0.84 TCGA-GN-A4U7-06 5 151771977 151771977 C T NMUR2 Silent p.V341V 0.81 TCGA-GN-A4U7-06 5 159344616 159344624 AGAACCTAG - ADRA1B In_Frame_Del p.N236_E238del 0.89 TCGA-GN-A4U7-06 5 168098258 168098258 C T SLIT3 Missense_Mutation p.G1358S 0.73 tolerated(0.08) possibly_damaging(0.573) TCGA-GN-A4U7-06 5 176824842 176824842 C T SLC34A1 Missense_Mutation p.P492L 0.35 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U7-06 5 31799634 31799634 C T PDZD2 Silent p.F93F 0.45 TCGA-GN-A4U7-06 5 90002152 90002152 G A GPR98 Missense_Mutation p.G2891S 0.38 probably_damaging(0.996) TCGA-GN-A4U7-06 5 90002153 90002153 G A GPR98 Missense_Mutation p.G2891D 0.38 probably_damaging(0.998) TCGA-GN-A4U7-06 6 12123600 12123600 C T HIVEP1 Missense_Mutation p.S1191F 0.40 deleterious(0.02) benign(0.379) TCGA-GN-A4U7-06 6 126359916 126359916 C T TRMT11 Silent p.F442F 0.85 TCGA-GN-A4U7-06 6 148865642 148865642 C T SASH1 Silent p.P1012P 0.78 TCGA-GN-A4U7-06 6 169626382 169626382 C T THBS2 Missense_Mutation p.E811K 0.85 tolerated(0.08) possibly_damaging(0.481) TCGA-GN-A4U7-06 6 30920765 30920765 G A DPCR1 Silent p.R1351R 0.40 TCGA-GN-A4U7-06 6 31614291 31614291 G A BAG6 Silent p.S272S 0.33 TCGA-GN-A4U7-06 6 31962395 31962395 G A C4A Missense_Mutation p.A905T 0.14 tolerated(0.57) benign(0.008) TCGA-GN-A4U7-06 6 33136330 33136330 C T COL11A2 Missense_Mutation p.G1223E 0.42 unknown(0) TCGA-GN-A4U7-06 6 33136331 33136331 C T COL11A2 Missense_Mutation p.G1223R 0.43 unknown(0) TCGA-GN-A4U7-06 6 33148920 33148920 C T COL11A2 Missense_Mutation p.G297R 0.37 probably_damaging(0.979) TCGA-GN-A4U7-06 6 36260881 36260882 - C PNPLA1 Frame_Shift_Ins p.T164Dfs*101 0.34 TCGA-GN-A4U7-06 6 40400729 40400729 C T LRFN2 Missense_Mutation p.G42R 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A4U7-06 6 43163916 43163916 C G CUL9 Missense_Mutation p.A833G 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A4U7-06 6 43163917 43163917 C T CUL9 Silent p.A833A 0.43 TCGA-GN-A4U7-06 6 43593277 43593277 G A GTPBP2 Silent p.A176A 0.41 TCGA-GN-A4U7-06 6 56357849 56357849 G A DST Silent p.F4188F 0.28 TCGA-GN-A4U7-06 6 75893829 75893829 C T COL12A1 Missense_Mutation p.M343I 0.43 benign(0.011) TCGA-GN-A4U7-06 7 100490199 100490199 T C ACHE Missense_Mutation p.N437D 0.21 deleterious(0.04) probably_damaging(1) TCGA-GN-A4U7-06 7 116859151 116859151 C T ST7 Silent p.I473I 0.57 TCGA-GN-A4U7-06 7 117282567 117282567 G T CFTR Nonsense_Mutation p.G1265* 0.19 TCGA-GN-A4U7-06 7 131912223 131912223 G A PLXNA4 Silent p.I623I 0.37 TCGA-GN-A4U7-06 7 139090466 139090466 A T LUC7L2 Missense_Mutation p.N214I 0.56 deleterious(0.03) possibly_damaging(0.579) TCGA-GN-A4U7-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.57 deleterious(0) probably_damaging(0.967) TCGA-GN-A4U7-06 7 141408663 141408663 G A WEE2 Silent p.E35E 0.31 TCGA-GN-A4U7-06 7 141618885 141618885 C T OR9A4 Silent p.I70I 0.60 TCGA-GN-A4U7-06 7 143748366 143748366 G A OR2A5 Missense_Mutation p.S291N 0.29 deleterious(0) probably_damaging(0.912) TCGA-GN-A4U7-06 7 146818211 146818211 T C CNTNAP2 Missense_Mutation p.F299L 0.38 deleterious(0.03) possibly_damaging(0.733) TCGA-GN-A4U7-06 7 157000112 157000112 A G UBE3C Missense_Mutation p.Q480R 0.22 deleterious(0.02) benign(0.358) TCGA-GN-A4U7-06 7 18633644 18633644 G A HDAC9 Missense_Mutation p.R219Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U7-06 7 19156582 19156582 G A TWIST1 Silent p.T121T 0.57 TCGA-GN-A4U7-06 7 30702391 30702391 C T CRHR2 Missense_Mutation p.G233S 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A4U7-06 7 82583260 82583260 C T PCLO Missense_Mutation p.E2337K 0.55 unknown(0) TCGA-GN-A4U7-06 7 82584927 82584927 T C PCLO Missense_Mutation p.E1781G 0.65 unknown(0) TCGA-GN-A4U7-06 7 931927 931927 A G GET4 Silent p.L206L 0.34 TCGA-GN-A4U7-06 7 98460948 98460948 A T TMEM130 Missense_Mutation p.V54E 0.71 tolerated(0.38) benign(0.019) TCGA-GN-A4U7-06 7 99245936 99245936 C T CYP3A5 Missense_Mutation p.G501R 0.53 deleterious(0) probably_damaging(0.914) TCGA-GN-A4U7-06 8 106815454 106815454 G A ZFPM2 Silent p.L1048L 0.41 TCGA-GN-A4U7-06 8 110420353 110420353 G A PKHD1L1 Missense_Mutation p.G630E 0.51 deleterious(0) probably_damaging(0.958) TCGA-GN-A4U7-06 8 143866589 143866589 C T LY6D 3'UTR 0.29 TCGA-GN-A4U7-06 8 143866590 143866590 C T LY6D 3'UTR 0.29 TCGA-GN-A4U7-06 8 143927825 143927825 G A GML Missense_Mutation p.E66K 0.34 deleterious(0.02) possibly_damaging(0.521) TCGA-GN-A4U7-06 8 16026279 16026279 C T MSR1 Silent p.E106E 0.41 TCGA-GN-A4U7-06 8 27297912 27297912 G A PTK2B Missense_Mutation p.D665N 0.53 deleterious(0) benign(0.186) TCGA-GN-A4U7-06 8 27401990 27401990 A T EPHX2 Missense_Mutation p.K540M 0.42 deleterious(0.02) possibly_damaging(0.555) TCGA-GN-A4U7-06 8 3200831 3200831 G A CSMD1 Nonsense_Mutation p.Q1206* 0.32 TCGA-GN-A4U7-06 8 42552623 42552623 C T CHRNB3 5'UTR 0.56 TCGA-GN-A4U7-06 8 42552624 42552624 C T CHRNB3 5'UTR 0.56 TCGA-GN-A4U7-06 8 6794287 6794287 G A DEFA4 Silent p.S45S 0.42 TCGA-GN-A4U7-06 8 87081704 87081704 G A PSKH2 Missense_Mutation p.R50C 0.52 tolerated(0.21) possibly_damaging(0.451) TCGA-GN-A4U7-06 8 87437474 87437474 C T WWP1 Missense_Mutation p.H362Y 0.43 tolerated(0.55) probably_damaging(0.999) TCGA-GN-A4U7-06 8 8748178 8748178 G A MFHAS1 Silent p.L797L 0.43 TCGA-GN-A4U7-06 8 90982699 90982699 A G NBN Silent p.F263F 0.45 TCGA-GN-A4U7-06 9 100124562 100124562 G A CCDC180 Silent p.R1291R 0.85 TCGA-GN-A4U7-06 9 100124563 100124563 G A CCDC180 Missense_Mutation p.G1292S 0.85 tolerated(0.34) benign(0.001) TCGA-GN-A4U7-06 9 104319679 104319679 T C RNF20 Missense_Mutation p.L728P 0.91 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U7-06 9 113444977 113444977 G A MUSK Missense_Mutation p.E35K 0.86 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GN-A4U7-06 9 134353994 134353995 - CAGGC PRRC2B Frame_Shift_Ins p.V1585Rfs*34 0.41 TCGA-GN-A4U7-06 9 138376659 138376659 C T PPP1R26 Silent p.L101L 0.86 TCGA-GN-A4U7-06 9 4118481 4118481 C G GLIS3 Missense_Mutation p.G333R 0.73 deleterious(0) probably_damaging(1) TCGA-GN-A4U7-06 X 100183350 100183350 C T XKRX 5'UTR 0.47 TCGA-GN-A4U7-06 X 105153109 105153109 G A NRK Silent p.Q493Q 0.35 TCGA-GN-A4U7-06 X 106331704 106331704 G A RBM41 Missense_Mutation p.P297S 0.47 deleterious(0.02) benign(0.215) TCGA-GN-A4U7-06 X 111022256 111022256 C T TRPC5 Missense_Mutation p.R730K 0.35 tolerated(0.06) probably_damaging(0.935) TCGA-GN-A4U7-06 X 118222590 118222590 C T KIAA1210 Missense_Mutation p.S868N 0.61 tolerated(0.07) possibly_damaging(0.781) TCGA-GN-A4U7-06 X 128624133 128624133 G T SMARCA1 Missense_Mutation p.R618S 0.05 tolerated(0.21) possibly_damaging(0.614) TCGA-GN-A4U7-06 X 128724183 128724183 C T OCRL Missense_Mutation p.P881L 0.42 tolerated(0.8) benign(0.031) TCGA-GN-A4U7-06 X 129771337 129771337 G A ENOX2 Missense_Mutation p.R422C 0.50 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U7-06 X 132548901 132548901 C T GPC4 Silent p.S31S 0.45 TCGA-GN-A4U7-06 X 155252854 155252854 G A WASH6P RNA 0.24 TCGA-GN-A4U7-06 X 155252855 155252855 A C WASH6P RNA 0.29 TCGA-GN-A4U7-06 X 30237090 30237090 C T MAGEB2 Silent p.S131S 0.29 TCGA-GN-A4U7-06 X 36162975 36162975 C T CHDC2 3'UTR 0.41 TCGA-GN-A4U7-06 X 37028355 37028355 G A FAM47C Silent p.E624E 0.46 TCGA-GN-A4U7-06 X 39923819 39923819 G A BCOR Missense_Mutation p.P1091L 0.40 tolerated(0.71) benign(0.003) TCGA-GN-A4U7-06 X 44089003 44089003 A C EFHC2 Missense_Mutation p.L548R 0.08 tolerated(0.34) benign(0.013) TCGA-GN-A4U7-06 X 47307904 47307904 C T ZNF41 Missense_Mutation p.R422K 0.39 deleterious(0.04) probably_damaging(0.958) TCGA-GN-A4U7-06 X 47774789 47774789 T C ZNF81 Silent p.R248R 0.48 TCGA-GN-A4U7-06 X 49063569 49063569 C T CACNA1F Missense_Mutation p.G1721S 0.39 tolerated(1) benign(0) TCGA-GN-A4U7-06 X 64953082 64953082 C T MSN Silent p.I245I 0.40 TCGA-GN-A4U7-06 X 75004145 75004145 C T MAGEE2 Missense_Mutation p.E248K 0.35 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U7-06 X 77112265 77112265 G A MAGT1 Missense_Mutation p.L245F 0.40 tolerated(0.09) benign(0.044) TCGA-GN-A4U8-06 10 123258026 123258026 C T FGFR2 Missense_Mutation p.G553E 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 10 123842258 123842258 G A TACC2 Silent p.R81R 0.36 TCGA-GN-A4U8-06 10 126370393 126370393 G A FAM53B Missense_Mutation p.S230F 0.39 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U8-06 10 134942326 134942326 G A GPR123 Missense_Mutation p.D332N 0.24 tolerated(0.66) benign(0.002) TCGA-GN-A4U8-06 10 135095784 135095784 G A TUBGCP2 Silent p.T812T 0.38 TCGA-GN-A4U8-06 10 135095785 135095785 G A TUBGCP2 Missense_Mutation p.T812I 0.38 deleterious(0.01) benign(0.168) TCGA-GN-A4U8-06 10 21102932 21102932 G T NEBL Missense_Mutation p.P761Q 0.18 deleterious(0.02) benign(0.258) TCGA-GN-A4U8-06 10 21124456 21124456 C A NEBL Nonsense_Mutation p.E479* 0.26 TCGA-GN-A4U8-06 10 26455081 26455081 G A MYO3A Missense_Mutation p.D1029N 0.24 deleterious(0.02) benign(0.052) TCGA-GN-A4U8-06 10 28272896 28272896 G A ARMC4 Missense_Mutation p.S232L 0.29 deleterious(0.01) possibly_damaging(0.477) TCGA-GN-A4U8-06 10 3151552 3151552 C T PFKP Silent p.S323S 0.35 TCGA-GN-A4U8-06 10 5254618 5254618 G A AKR1C4 Missense_Mutation p.D204N 0.24 tolerated(0.26) benign(0.095) TCGA-GN-A4U8-06 10 55782894 55782894 G A PCDH15 Missense_Mutation p.L762F 0.31 tolerated(0.36) probably_damaging(0.958) TCGA-GN-A4U8-06 10 89692775 89692775 C T PTEN Nonsense_Mutation p.Q87* 0.32 TCGA-GN-A4U8-06 10 96698517 96698517 A T CYP2C9 Missense_Mutation p.R26S 0.40 tolerated(0.35) benign(0.007) TCGA-GN-A4U8-06 11 110494908 110494908 C T ARHGAP20 Missense_Mutation p.V161M 0.23 deleterious(0.02) possibly_damaging(0.494) TCGA-GN-A4U8-06 11 111425979 111425979 G A LAYN Missense_Mutation p.E216K 0.24 tolerated(1) benign(0.002) TCGA-GN-A4U8-06 11 111624195 111624195 G A PPP2R1B Missense_Mutation p.P379L 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 11 111624196 111624196 G A PPP2R1B Missense_Mutation p.P379S 0.20 deleterious(0.01) probably_damaging(0.937) TCGA-GN-A4U8-06 11 112020877 112020877 T A IL18 Silent p.I48I 0.19 TCGA-GN-A4U8-06 11 118498844 118498844 C T PHLDB1 Silent p.T435T 0.32 TCGA-GN-A4U8-06 11 118899985 118899985 G A SLC37A4 Missense_Mutation p.S32F 0.15 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U8-06 11 121384967 121384967 C T SORL1 Missense_Mutation p.S383F 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 11 123847548 123847548 C A OR10S1 Missense_Mutation p.G284V 0.24 deleterious(0.03) probably_damaging(1) TCGA-GN-A4U8-06 11 123894487 123894487 C T OR10G9 Silent p.F256F 0.25 TCGA-GN-A4U8-06 11 124621325 124621325 G A VSIG2 Silent p.S71S 0.22 TCGA-GN-A4U8-06 11 1271018 1271018 G A MUC5B Missense_Mutation p.R4303K 0.27 benign(0.001) TCGA-GN-A4U8-06 11 133789669 133789669 C T IGSF9B Silent p.P1317P 0.19 TCGA-GN-A4U8-06 11 19197609 19197609 G A ZDHHC13 3'UTR 0.25 TCGA-GN-A4U8-06 11 43837931 43837931 C T HSD17B12 Missense_Mutation p.S164F 0.20 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U8-06 11 46332687 46332687 A G CREB3L1 Missense_Mutation p.M234V 0.26 tolerated(0.66) benign(0) TCGA-GN-A4U8-06 11 4903404 4903404 G T OR51T1 Missense_Mutation p.R119L 0.25 deleterious(0.02) benign(0.024) TCGA-GN-A4U8-06 11 4944897 4944897 G A OR51G1 Missense_Mutation p.R225C 0.23 deleterious(0.02) benign(0.035) TCGA-GN-A4U8-06 11 55999780 55999780 G A OR5T2 Silent p.I294I 0.27 TCGA-GN-A4U8-06 11 56058264 56058264 G A OR8H1 Missense_Mutation p.S92F 0.24 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 11 65793074 65793074 C T CATSPER1 Silent p.G259G 0.27 TCGA-GN-A4U8-06 11 65793848 65793848 C T CATSPER1 Translation_Start_Site p.M1? 0.22 deleterious(0) possibly_damaging(0.775) TCGA-GN-A4U8-06 11 67786692 67786692 C T ALDH3B1 Silent p.L149L 0.08 TCGA-GN-A4U8-06 11 67815268 67815268 G A TCIRG1 Nonsense_Mutation p.W487* 0.22 TCGA-GN-A4U8-06 11 67815269 67815269 G A TCIRG1 Nonsense_Mutation p.W487* 0.23 TCGA-GN-A4U8-06 11 70279378 70279378 C T CTTN Missense_Mutation p.P443S 0.28 tolerated(0.14) benign(0.02) TCGA-GN-A4U8-06 11 7081197 7081197 G A NLRP14 Silent p.L902L 0.22 TCGA-GN-A4U8-06 11 7949624 7949624 C T OR10A6 Missense_Mutation p.E196K 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-GN-A4U8-06 11 82644304 82644304 C T C11orf82 Missense_Mutation p.P642S 0.23 tolerated(0.08) benign(0.4) TCGA-GN-A4U8-06 11 85346839 85346839 C T TMEM126B Intron 0.30 TCGA-GN-A4U8-06 11 89531428 89531428 C T TRIM49 Missense_Mutation p.G410E 0.12 deleterious(0) possibly_damaging(0.816) TCGA-GN-A4U8-06 11 92087052 92087052 C T FAT3 Missense_Mutation p.P592S 0.24 possibly_damaging(0.902) TCGA-GN-A4U8-06 11 92258028 92258028 A C FAT3 Missense_Mutation p.D1174A 0.19 probably_damaging(1) TCGA-GN-A4U8-06 11 99942489 99942489 C T CNTN5 Missense_Mutation p.S451L 0.20 deleterious(0.04) possibly_damaging(0.609) TCGA-GN-A4U8-06 12 100957333 100957333 C T NR1H4 3'Flank 0.28 TCGA-GN-A4U8-06 12 108686185 108686185 C T CMKLR1 Silent p.G185G 0.33 TCGA-GN-A4U8-06 12 11091671 11091671 G A TAS2R14 Missense_Mutation p.R46W 0.13 deleterious(0) benign(0.002) TCGA-GN-A4U8-06 12 11138717 11138717 G A TAS2R50 Missense_Mutation p.S248L 0.29 tolerated(0.09) benign(0.243) TCGA-GN-A4U8-06 12 112884098 112884098 C T PTPN11 Silent p.I11I 0.29 TCGA-GN-A4U8-06 12 117383327 117383327 C T FBXW8 Silent p.N194N 0.29 TCGA-GN-A4U8-06 12 126138568 126138568 C T TMEM132B Missense_Mutation p.P850L 0.27 tolerated(0.12) benign(0.002) TCGA-GN-A4U8-06 12 133244129 133244129 G A POLE Missense_Mutation p.A760V 0.41 deleterious(0) probably_damaging(0.964) TCGA-GN-A4U8-06 12 21919272 21919272 G A KCNJ8 Silent p.I220I 0.23 TCGA-GN-A4U8-06 12 32487522 32487522 A G BICD1 Missense_Mutation p.T725A 0.20 tolerated(0.15) possibly_damaging(0.829) TCGA-GN-A4U8-06 12 39980082 39980082 C T ABCD2 Missense_Mutation p.G555E 0.34 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U8-06 12 47172419 47172419 C T SLC38A4 Missense_Mutation p.M286I 0.25 tolerated(0.45) benign(0.079) TCGA-GN-A4U8-06 12 51897853 51897853 C T SLC4A8 Missense_Mutation p.P1041L 0.33 deleterious(0.01) benign(0.003) TCGA-GN-A4U8-06 12 52882288 52882288 C T KRT6A Silent p.G416G 0.21 TCGA-GN-A4U8-06 12 55524480 55524480 C T OR9K2 Missense_Mutation p.P310S 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-GN-A4U8-06 12 5603504 5603504 G A NTF3 Missense_Mutation p.D55N 0.27 tolerated(0.08) probably_damaging(0.956) TCGA-GN-A4U8-06 12 57112693 57112693 G A NACA Intron 0.20 TCGA-GN-A4U8-06 12 57549949 57549949 C T LRP1 Nonsense_Mutation p.Q434* 0.20 TCGA-GN-A4U8-06 12 57873221 57873221 G A ARHGAP9 Intron 0.26 TCGA-GN-A4U8-06 12 63974589 63974589 G A DPY19L2 Missense_Mutation p.R585C 0.20 deleterious(0.01) benign(0.035) TCGA-GN-A4U8-06 12 64011118 64011118 G C DPY19L2 Missense_Mutation p.S395C 0.13 deleterious(0.03) benign(0.049) TCGA-GN-A4U8-06 12 6672803 6672803 G A NOP2 Missense_Mutation p.P255L 0.20 deleterious(0) probably_damaging(0.928) TCGA-GN-A4U8-06 12 6672804 6672804 G A NOP2 Missense_Mutation p.P255S 0.21 deleterious(0) benign(0.356) TCGA-GN-A4U8-06 12 6691438 6691438 G A CHD4 Silent p.V1460V 0.28 TCGA-GN-A4U8-06 12 71148407 71148407 G A PTPRR Intron 0.29 TCGA-GN-A4U8-06 12 7864234 7864234 C T DPPA3 Missense_Mutation p.S23F 0.27 tolerated(0.11) benign(0.003) TCGA-GN-A4U8-06 12 91347778 91347778 C T CCER1 Missense_Mutation p.E248K 0.26 deleterious(0.01) possibly_damaging(0.801) TCGA-GN-A4U8-06 12 91552220 91552220 A G DCN Silent p.L131L 0.27 TCGA-GN-A4U8-06 12 95603072 95603072 G A FGD6 Missense_Mutation p.S663F 0.24 tolerated(0.35) benign(0.211) TCGA-GN-A4U8-06 12 96052937 96052937 C T NTN4 Missense_Mutation p.M604I 0.29 deleterious(0.02) probably_damaging(0.925) TCGA-GN-A4U8-06 12 96371813 96371813 G A HAL Silent p.S521S 0.18 TCGA-GN-A4U8-06 12 98850543 98850543 C A SLC9A7P1 RNA 0.19 TCGA-GN-A4U8-06 13 114079378 114079378 C T ADPRHL1 Missense_Mutation p.E255K 0.22 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U8-06 13 114107704 114107704 G A ADPRHL1 Missense_Mutation p.L17F 0.35 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U8-06 13 31318201 31318201 C T ALOX5AP Silent p.F25F 0.25 TCGA-GN-A4U8-06 13 41766264 41766264 C T KBTBD7 3'UTR 0.19 TCGA-GN-A4U8-06 13 42295712 42295712 C T VWA8 Splice_Site p.X920_splice 0.21 TCGA-GN-A4U8-06 13 45554928 45554928 A C NUFIP1 Missense_Mutation p.F175V 0.18 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 13 53420566 53420566 C T PCDH8 Missense_Mutation p.G669E 0.16 deleterious(0) possibly_damaging(0.898) TCGA-GN-A4U8-06 13 92345554 92345554 G A GPC5 Missense_Mutation p.D147N 0.24 deleterious(0) probably_damaging(0.986) TCGA-GN-A4U8-06 13 92345951 92345951 G A GPC5 Missense_Mutation p.R279Q 0.23 tolerated(0.27) probably_damaging(1) TCGA-GN-A4U8-06 13 95034772 95034772 G A GPC6 Silent p.E419E 0.25 TCGA-GN-A4U8-06 14 104124053 104124053 G A KLC1 Silent p.E144E 0.18 TCGA-GN-A4U8-06 14 106667641 106667641 G A IGHV3-20 Silent p.S97S 0.27 TCGA-GN-A4U8-06 14 20404752 20404752 G A OR4K1 Nonsense_Mutation p.W309* 0.19 TCGA-GN-A4U8-06 14 21897442 21897442 G A CHD8 Missense_Mutation p.P299L 0.34 deleterious_low_confidence(0.04) benign(0.042) TCGA-GN-A4U8-06 14 22363110 22363110 G A TRAV8-4 Missense_Mutation p.G81S 0.30 tolerated(0.05) possibly_damaging(0.653) TCGA-GN-A4U8-06 14 22984637 22984637 G A TRAJ28 Missense_Mutation p.G13E 0.36 unknown(0) TCGA-GN-A4U8-06 14 23884359 23884359 G T MYH7 Missense_Mutation p.Q1802K 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-GN-A4U8-06 14 24780831 24780831 A G LTB4R2 Missense_Mutation p.R321G 0.30 tolerated(0.13) benign(0.154) TCGA-GN-A4U8-06 14 29237399 29237399 C T FOXG1 Missense_Mutation p.S305F 0.27 deleterious(0) probably_damaging(0.964) TCGA-GN-A4U8-06 14 50713960 50713960 C T L2HGDH Missense_Mutation p.G403E 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 14 65253736 65253736 G A SPTB Silent p.L983L 0.27 TCGA-GN-A4U8-06 14 73721309 73721309 C T PAPLN Missense_Mutation p.S437F 0.24 tolerated(0.11) possibly_damaging(0.819) TCGA-GN-A4U8-06 14 74188089 74188089 G A ELMSAN1 Nonsense_Mutation p.Q950* 0.29 TCGA-GN-A4U8-06 14 74188090 74188090 G A ELMSAN1 Silent p.I949I 0.30 TCGA-GN-A4U8-06 14 74340788 74340788 C T PTGR2 Silent p.V73V 0.27 TCGA-GN-A4U8-06 14 79181171 79181171 G A NRXN3 Missense_Mutation p.G205E 0.26 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 14 79270107 79270107 C T NRXN3 Missense_Mutation p.S357F 0.22 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U8-06 14 94395412 94395412 G A FAM181A Missense_Mutation p.G323S 0.24 tolerated(0.34) benign(0.098) TCGA-GN-A4U8-06 14 94754846 94754846 G A SERPINA10 Missense_Mutation p.H257Y 0.28 tolerated(0.51) benign(0.027) TCGA-GN-A4U8-06 14 96131409 96131409 G A TCL6 RNA 0.23 TCGA-GN-A4U8-06 15 20495366 20495366 G A CHEK2P2 Intron 0.04 TCGA-GN-A4U8-06 15 24922887 24922887 C T NPAP1 Missense_Mutation p.P625S 0.27 tolerated(0.24) benign(0.003) TCGA-GN-A4U8-06 15 24924170 24924170 C T NPAP1 Silent p.F1052F 0.29 TCGA-GN-A4U8-06 15 25463723 25463723 T C SNORD115-27 5'Flank 0.28 TCGA-GN-A4U8-06 15 25485039 25485039 C T SNORD115-38 RNA 0.25 TCGA-GN-A4U8-06 15 32928527 32928527 G A ARHGAP11A Missense_Mutation p.R518Q 0.27 tolerated(0.06) possibly_damaging(0.621) TCGA-GN-A4U8-06 15 38782757 38782757 A G RASGRP1 Nonstop_Mutation p.*798Qext*4 0.13 TCGA-GN-A4U8-06 15 40662091 40662091 C T DISP2 Silent p.L1260L 0.27 TCGA-GN-A4U8-06 15 41192876 41192876 G A VPS18 Silent p.R620R 0.30 TCGA-GN-A4U8-06 15 41222069 41222069 C T DLL4 Nonsense_Mutation p.Q31* 0.18 TCGA-GN-A4U8-06 15 45394109 45394109 C T DUOX2 Silent p.S911S 0.29 TCGA-GN-A4U8-06 15 53907738 53907738 C T WDR72 Missense_Mutation p.E889K 0.27 tolerated(0.22) benign(0.008) TCGA-GN-A4U8-06 15 54542433 54542433 T C UNC13C Missense_Mutation p.V1080A 0.13 deleterious_low_confidence(0) benign(0.296) TCGA-GN-A4U8-06 15 65157784 65157784 C T PLEKHO2 Silent p.S390S 0.29 TCGA-GN-A4U8-06 15 73925629 73925629 G A NPTN 5'UTR 0.30 TCGA-GN-A4U8-06 15 82335362 82335362 G A MEX3B 3'UTR 0.23 TCGA-GN-A4U8-06 15 88423594 88423594 G A NTRK3 Silent p.F747F 0.22 TCGA-GN-A4U8-06 15 91835652 91835652 G A SV2B Missense_Mutation p.G641E 0.22 deleterious(0) probably_damaging(0.994) TCGA-GN-A4U8-06 15 93567917 93567917 G A CHD2 Nonsense_Mutation p.W1823* 0.35 TCGA-GN-A4U8-06 16 1250535 1250535 C T CACNA1H Silent p.F361F 0.23 TCGA-GN-A4U8-06 16 1400959 1400959 G A TSR3 Silent p.S125S 0.22 TCGA-GN-A4U8-06 16 15675129 15675129 C T C16orf45 Silent p.I120I 0.25 TCGA-GN-A4U8-06 16 57075434 57075434 C T NLRC5 Nonsense_Mutation p.Q993* 0.17 TCGA-GN-A4U8-06 16 57116349 57116349 C T NLRC5 Missense_Mutation p.P1837L 0.25 deleterious(0.03) benign(0.111) TCGA-GN-A4U8-06 16 57738929 57738929 G A CCDC135 Missense_Mutation p.E281K 0.32 tolerated(0.05) possibly_damaging(0.69) TCGA-GN-A4U8-06 16 62055465 62055465 C T CDH8 5'UTR 0.19 TCGA-GN-A4U8-06 16 71007902 71007902 G A HYDIN Missense_Mutation p.H1687Y 0.15 possibly_damaging(0.888) TCGA-GN-A4U8-06 16 72992838 72992838 G A ZFHX3 Missense_Mutation p.L403F 0.24 probably_damaging(0.969) TCGA-GN-A4U8-06 16 74443471 74443471 C T CLEC18B Missense_Mutation p.R436Q 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-GN-A4U8-06 16 77918572 77918572 C T VAT1L Missense_Mutation p.S317F 0.21 tolerated(0.74) possibly_damaging(0.882) TCGA-GN-A4U8-06 16 81969780 81969780 C T PLCG2 Missense_Mutation p.P950L 0.25 tolerated(0.63) possibly_damaging(0.883) TCGA-GN-A4U8-06 16 84182624 84182624 C T DNAAF1 Missense_Mutation p.P46L 0.22 deleterious(0.04) benign(0.064) TCGA-GN-A4U8-06 16 89999894 89999894 G A TUBB3 Missense_Mutation p.R62Q 0.30 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-GN-A4U8-06 17 10358395 10358395 C T MYH4 Splice_Site p.X767_splice 0.23 TCGA-GN-A4U8-06 17 10428244 10428244 C T MYH2 Missense_Mutation p.E1601K 0.22 deleterious(0.03) possibly_damaging(0.555) TCGA-GN-A4U8-06 17 10441093 10441093 G A MYH2 Silent p.F492F 0.29 TCGA-GN-A4U8-06 17 11593453 11593453 G T DNAH9 Missense_Mutation p.K1438N 0.21 benign(0.012) TCGA-GN-A4U8-06 17 11795111 11795111 C T DNAH9 Silent p.F3710F 0.26 TCGA-GN-A4U8-06 17 12666526 12666526 C T MYOCD Silent p.I842I 0.31 TCGA-GN-A4U8-06 17 17131316 17131316 C T FLCN Missense_Mutation p.E46K 0.28 deleterious(0.03) benign(0.069) TCGA-GN-A4U8-06 17 27861295 27861295 C T TAOK1 Missense_Mutation p.R841W 0.31 deleterious(0) probably_damaging(0.965) TCGA-GN-A4U8-06 17 30348842 30348842 A G LRRC37B Missense_Mutation p.Y226C 0.27 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 17 30376145 30376145 C T LRRC37B Missense_Mutation p.T803I 0.25 tolerated(0.34) possibly_damaging(0.86) TCGA-GN-A4U8-06 17 36707395 36707395 G A SRCIN1 Silent p.G986G 0.18 TCGA-GN-A4U8-06 17 40343091 40343091 C T GHDC Missense_Mutation p.A343T 0.24 deleterious(0.04) probably_damaging(0.93) TCGA-GN-A4U8-06 17 42266514 42266514 C T TMUB2 Missense_Mutation p.L54F 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A4U8-06 17 44248500 44248500 G A KANSL1 Missense_Mutation p.S337F 0.26 deleterious(0.01) possibly_damaging(0.904) TCGA-GN-A4U8-06 17 46148766 46148766 C T CBX1 3'UTR 0.25 TCGA-GN-A4U8-06 17 56247706 56247706 G A OR4D2 Silent p.G230G 0.30 TCGA-GN-A4U8-06 17 56650539 56650539 T C TEX14 Intron 0.24 TCGA-GN-A4U8-06 17 57287389 57287389 G A SMG8 5'UTR 0.21 TCGA-GN-A4U8-06 17 60059730 60059730 G A MED13 Missense_Mutation p.P1212S 0.26 tolerated(0.21) benign(0.05) TCGA-GN-A4U8-06 17 62041036 62041036 C T SCN4A Missense_Mutation p.M534I 0.23 tolerated(0.08) benign(0.04) TCGA-GN-A4U8-06 17 7318902 7318902 G A NLGN2 Silent p.Q370Q 0.21 TCGA-GN-A4U8-06 17 74060072 74060072 G A SRP68 Silent p.T182T 0.26 TCGA-GN-A4U8-06 17 7535018 7535018 C T SHBG Missense_Mutation p.P223S 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A4U8-06 17 76490674 76490674 C T DNAH17 Splice_Site p.X2076_splice 0.26 TCGA-GN-A4U8-06 17 76502850 76502850 G A DNAH17 Silent p.S1581S 0.25 TCGA-GN-A4U8-06 17 76851849 76851849 G A TIMP2 Missense_Mutation p.A188V 0.29 tolerated(0.05) probably_damaging(0.974) TCGA-GN-A4U8-06 17 7727273 7727273 C T DNAH2 Silent p.I3817I 0.29 TCGA-GN-A4U8-06 17 7758454 7758454 C T TMEM88 Missense_Mutation p.P21L 0.20 tolerated(0.09) probably_damaging(0.918) TCGA-GN-A4U8-06 17 7758455 7758455 C T TMEM88 Silent p.P21P 0.20 TCGA-GN-A4U8-06 18 12506555 12506555 G A SPIRE1 Missense_Mutation p.P298L 0.25 deleterious(0) probably_damaging(0.944) TCGA-GN-A4U8-06 18 20573375 20573375 C T RBBP8 Missense_Mutation p.P529S 0.27 tolerated(0.16) benign(0.043) TCGA-GN-A4U8-06 18 28669511 28669511 C T DSC2 Missense_Mutation p.R174K 0.40 tolerated(0.09) benign(0.038) TCGA-GN-A4U8-06 18 28934850 28934850 G A DSG1 Silent p.R897R 0.29 TCGA-GN-A4U8-06 18 30093406 30093406 C T WBP11P1 RNA 0.32 TCGA-GN-A4U8-06 18 44266136 44266136 C T ST8SIA5 Splice_Site p.X190_splice 0.22 TCGA-GN-A4U8-06 18 50278535 50278535 G A DCC Missense_Mutation p.G68E 0.29 tolerated(0.07) benign(0.006) TCGA-GN-A4U8-06 18 55024483 55024483 C T ST8SIA3 Silent p.I214I 0.27 TCGA-GN-A4U8-06 18 55315821 55315821 C T ATP8B1 Missense_Mutation p.D1219N 0.18 tolerated(0.17) benign(0.055) TCGA-GN-A4U8-06 18 57115245 57115245 G A CCBE1 Missense_Mutation p.P249S 0.30 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U8-06 18 67992406 67992406 C T SOCS6 Silent p.L168L 0.31 TCGA-GN-A4U8-06 18 70526082 70526082 C T NETO1 Missense_Mutation p.A150T 0.29 deleterious(0) probably_damaging(0.909) TCGA-GN-A4U8-06 18 73000566 73000566 G A TSHZ1 Silent p.L1023L 0.23 TCGA-GN-A4U8-06 18 73000568 73000568 T A TSHZ1 Missense_Mutation p.I1024N 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-GN-A4U8-06 19 1005379 1005379 C T GRIN3B Missense_Mutation p.L627F 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 19 11594517 11594517 G A ZNF653 Missense_Mutation p.P610S 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 19 11594518 11594518 G A ZNF653 Silent p.H609H 0.19 TCGA-GN-A4U8-06 19 12638052 12638052 G T ZNF564 Missense_Mutation p.F290L 0.22 tolerated(0.08) probably_damaging(0.924) TCGA-GN-A4U8-06 19 12863524 12863524 C T BEST2 Missense_Mutation p.L40F 0.25 tolerated(0.33) benign(0.02) TCGA-GN-A4U8-06 19 15134019 15134019 C T CCDC105 3'UTR 0.50 TCGA-GN-A4U8-06 19 1578380 1578380 C T MBD3 Missense_Mutation p.E279K 0.26 deleterious_low_confidence(0) benign(0.292) TCGA-GN-A4U8-06 19 16060671 16060671 C T OR10H4 Missense_Mutation p.P285L 0.23 deleterious(0) possibly_damaging(0.848) TCGA-GN-A4U8-06 19 16625374 16625374 C T C19orf44 Missense_Mutation p.T601M 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 19 17001362 17001362 C T F2RL3 Missense_Mutation p.T363I 0.25 tolerated(0.22) benign(0.008) TCGA-GN-A4U8-06 19 18684476 18684476 C T UBA52 Silent p.I36I 0.24 TCGA-GN-A4U8-06 19 36017588 36017588 A C SBSN Missense_Mutation p.N532K 0.21 tolerated(0.08) possibly_damaging(0.848) TCGA-GN-A4U8-06 19 36279258 36279258 C T ARHGAP33 Missense_Mutation p.A1103V 0.22 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-GN-A4U8-06 19 36517066 36517066 C T CLIP3 Missense_Mutation p.A222T 0.29 deleterious(0.02) benign(0.023) TCGA-GN-A4U8-06 19 38655144 38655144 C T SIPA1L3 Missense_Mutation p.S1269F 0.29 deleterious(0) probably_damaging(0.993) TCGA-GN-A4U8-06 19 38997158 38997158 G A RYR1 Silent p.R2888R 0.23 TCGA-GN-A4U8-06 19 41600878 41600878 C T CYP2A13 Silent p.F392F 0.24 TCGA-GN-A4U8-06 19 43430145 43430145 G A PSG7 Silent p.F341F 0.22 TCGA-GN-A4U8-06 19 43766111 43766111 G A PSG9 Silent p.L204L 0.24 TCGA-GN-A4U8-06 19 43922623 43922623 G A TEX101 3'UTR 0.31 TCGA-GN-A4U8-06 19 44516713 44516713 C T ZNF230 3'UTR 0.19 TCGA-GN-A4U8-06 19 45593701 45593701 C T GEMIN7 Missense_Mutation p.P110L 0.33 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 19 49110327 49110327 C T SPACA4 Missense_Mutation p.S31F 0.25 deleterious(0) probably_damaging(0.951) TCGA-GN-A4U8-06 19 49355505 49355505 G A PLEKHA4 Silent p.L469L 0.23 TCGA-GN-A4U8-06 19 49574007 49574007 G A KCNA7 Silent p.L228L 0.32 TCGA-GN-A4U8-06 19 50247522 50247522 G A TSKS Missense_Mutation p.R443W 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 19 51535267 51535267 C T KLK12 Missense_Mutation p.D108N 0.20 deleterious(0.02) possibly_damaging(0.486) TCGA-GN-A4U8-06 19 52132794 52132794 C T SIGLEC5 Missense_Mutation p.G173R 0.29 deleterious(0.04) possibly_damaging(0.55) TCGA-GN-A4U8-06 19 52132795 52132795 C T SIGLEC5 Silent p.A172A 0.29 TCGA-GN-A4U8-06 19 52271915 52271915 G A FPR2 Missense_Mutation p.E2K 0.28 deleterious(0.01) possibly_damaging(0.616) TCGA-GN-A4U8-06 19 52327708 52327708 C T FPR3 Missense_Mutation p.S236F 0.31 deleterious(0) possibly_damaging(0.464) TCGA-GN-A4U8-06 19 52497049 52497049 G A ZNF615 Missense_Mutation p.P438L 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A4U8-06 19 53208210 53208210 G A ZNF611 Missense_Mutation p.H700Y 0.19 deleterious(0) probably_damaging(0.948) TCGA-GN-A4U8-06 19 53344960 53344960 G A ZNF468 Missense_Mutation p.S196F 0.22 tolerated(1) benign(0) TCGA-GN-A4U8-06 19 53612707 53612707 G A ZNF415 Silent p.F197F 0.26 TCGA-GN-A4U8-06 19 53793693 53793693 C T BIRC8 5'UTR 0.27 TCGA-GN-A4U8-06 19 53911911 53911911 C T ZNF765 Missense_Mutation p.S368L 0.25 deleterious(0.02) probably_damaging(0.931) TCGA-GN-A4U8-06 19 54194150 54194150 T C MIR520A RNA 0.28 TCGA-GN-A4U8-06 19 54444853 54444853 C T CACNG7 Missense_Mutation p.S185F 0.31 deleterious(0) probably_damaging(0.985) TCGA-GN-A4U8-06 19 54515507 54515507 A G CACNG6 3'UTR 0.29 TCGA-GN-A4U8-06 19 56487600 56487600 T G NLRP8 Missense_Mutation p.L936R 0.21 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 19 57641750 57641750 G A USP29 Missense_Mutation p.M569I 0.24 tolerated(0.37) benign(0.004) TCGA-GN-A4U8-06 19 6380619 6380619 G A GTF2F1 Silent p.P438P 0.27 TCGA-GN-A4U8-06 19 9048875 9048875 G A MUC16 Missense_Mutation p.S10919F 0.23 possibly_damaging(0.588) TCGA-GN-A4U8-06 19 9064001 9064001 G A MUC16 Silent p.F7815F 0.26 TCGA-GN-A4U8-06 1 107866963 107866963 C T NTNG1 Silent p.P102P 0.23 TCGA-GN-A4U8-06 1 118166124 118166124 G A FAM46C Missense_Mutation p.G212R 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 1 120928516 120928516 C T FCGR1B Intron 0.23 TCGA-GN-A4U8-06 1 145015920 145015920 G A RP11-326G21.1 5'Flank 0.05 TCGA-GN-A4U8-06 1 151774899 151774899 G A LINGO4 Silent p.N94N 0.40 TCGA-GN-A4U8-06 1 152276189 152276189 C A FLG Nonsense_Mutation p.G3725* 0.21 TCGA-GN-A4U8-06 1 153012567 153012567 C T SPRR2D 3'UTR 0.48 TCGA-GN-A4U8-06 1 155170762 155170762 C T THBS3 Missense_Mutation p.E492K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A4U8-06 1 155838351 155838351 G A SYT11 Silent p.V210V 0.17 TCGA-GN-A4U8-06 1 156914894 156914894 G A ARHGEF11 Missense_Mutation p.R970C 0.18 deleterious(0.01) benign(0.015) TCGA-GN-A4U8-06 1 158369190 158369190 C T OR10T2 Missense_Mutation p.E23K 0.11 tolerated(0.19) benign(0.05) TCGA-GN-A4U8-06 1 159277710 159277710 C T FCER1A Silent p.P254P 0.20 TCGA-GN-A4U8-06 1 159921544 159921544 G A SLAMF9 Silent p.V259V 0.17 TCGA-GN-A4U8-06 1 160851925 160851925 C T ITLN1 Missense_Mutation p.G76D 0.17 deleterious(0.04) possibly_damaging(0.652) TCGA-GN-A4U8-06 1 165173111 165173111 G A LMX1A 3'UTR 0.43 TCGA-GN-A4U8-06 1 165175136 165175136 G T LMX1A Missense_Mutation p.P318Q 0.44 deleterious(0.03) probably_damaging(0.993) TCGA-GN-A4U8-06 1 169388186 169388186 C T CCDC181 Intron 0.26 TCGA-GN-A4U8-06 1 169388187 169388187 C T CCDC181 Intron 0.24 TCGA-GN-A4U8-06 1 169526008 169526008 C G F5 Silent p.L276L 0.22 TCGA-GN-A4U8-06 1 17401363 17401363 T C PADI2 Missense_Mutation p.I513V 0.27 tolerated(0.43) benign(0.001) TCGA-GN-A4U8-06 1 179609068 179609068 G A TDRD5 Missense_Mutation p.D539N 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-GN-A4U8-06 1 196342309 196342309 G A KCNT2 Missense_Mutation p.S455F 0.17 deleterious(0) possibly_damaging(0.603) TCGA-GN-A4U8-06 1 196434428 196434428 G A KCNT2 Silent p.F211F 0.37 TCGA-GN-A4U8-06 1 197024898 197024898 G A F13B Missense_Mutation p.S434L 0.35 tolerated(0.06) benign(0.315) TCGA-GN-A4U8-06 1 197313503 197313503 G A CRB1 Missense_Mutation p.D249N 0.23 tolerated(0.33) benign(0.117) TCGA-GN-A4U8-06 1 19992253 19992253 C T HTR6 Missense_Mutation p.P3S 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.478) TCGA-GN-A4U8-06 1 205538409 205538409 G A MFSD4 Missense_Mutation p.G71E 0.18 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 1 207196352 207196352 C T C1orf116 Missense_Mutation p.E253K 0.40 tolerated(0.14) benign(0.133) TCGA-GN-A4U8-06 1 212860168 212860168 G A BATF3 Missense_Mutation p.R117W 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 1 212860169 212860169 G A BATF3 Silent p.P116P 0.20 TCGA-GN-A4U8-06 1 217947744 217947744 A G SPATA17 Silent p.A196A 0.18 TCGA-GN-A4U8-06 1 23189565 23189565 G A EPHB2 Missense_Mutation p.D283N 0.21 tolerated(0.54) possibly_damaging(0.454) TCGA-GN-A4U8-06 1 241031931 241031931 G A RGS7 Missense_Mutation p.L189F 0.37 deleterious(0) probably_damaging(0.996) TCGA-GN-A4U8-06 1 247076605 247076605 A G AHCTF1 Missense_Mutation p.V171A 0.15 deleterious(0.01) benign(0.356) TCGA-GN-A4U8-06 1 26506936 26506936 C T CNKSR1 Intron 0.35 TCGA-GN-A4U8-06 1 28282834 28282834 C T SMPDL3B Intron 0.24 TCGA-GN-A4U8-06 1 28600569 28600569 C T SESN2 Missense_Mutation p.S307F 0.30 tolerated(0.13) benign(0.006) TCGA-GN-A4U8-06 1 31838629 31838629 A T FABP3 3'UTR 0.15 TCGA-GN-A4U8-06 1 32800433 32800433 G A MARCKSL1 Missense_Mutation p.A118V 0.24 tolerated(0.1) probably_damaging(0.918) TCGA-GN-A4U8-06 1 33987146 33987146 G A CSMD2 Missense_Mutation p.S3361L 0.27 deleterious(0) possibly_damaging(0.825) TCGA-GN-A4U8-06 1 34090794 34090794 C T CSMD2 Missense_Mutation p.R1746K 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-GN-A4U8-06 1 38478520 38478520 C T UTP11L Missense_Mutation p.H16Y 0.24 deleterious(0.03) probably_damaging(0.914) TCGA-GN-A4U8-06 1 55139376 55139376 C T MROH7 Silent p.A566A 0.19 TCGA-GN-A4U8-06 1 57170030 57170030 C T PRKAA2 Missense_Mutation p.P392L 0.24 tolerated(0.12) benign(0.101) TCGA-GN-A4U8-06 1 70518713 70518713 C A LRRC7 Missense_Mutation p.P1334Q 0.23 deleterious(0) possibly_damaging(0.713) TCGA-GN-A4U8-06 1 75672195 75672195 G A SLC44A5 3'UTR 0.33 TCGA-GN-A4U8-06 1 76262755 76262755 C T MSH4 Missense_Mutation p.P29S 0.19 deleterious_low_confidence(0.02) benign(0.001) TCGA-GN-A4U8-06 1 86196336 86196336 G A COL24A1 Missense_Mutation p.H1680Y 0.22 deleterious(0) benign(0.139) TCGA-GN-A4U8-06 1 8927218 8927218 G A ENO1 Silent p.I134I 0.25 TCGA-GN-A4U8-06 1 90399484 90399484 C T LRRC8D Missense_Mutation p.A286V 0.27 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 1 9107787 9107787 C T SLC2A5 Silent p.G100G 0.23 TCGA-GN-A4U8-06 1 95616888 95616888 C T TMEM56 Silent p.S104S 0.25 TCGA-GN-A4U8-06 20 13134686 13134686 G A SPTLC3 Missense_Mutation p.R439K 0.30 tolerated(0.13) benign(0.026) TCGA-GN-A4U8-06 20 13753186 13753186 G A ESF1 Missense_Mutation p.P409S 0.26 tolerated(0.15) benign(0.355) TCGA-GN-A4U8-06 20 21378018 21378020 TGC - NKX2-4 In_Frame_Del p.K6_H7delinsN 0.31 TCGA-GN-A4U8-06 20 23728433 23728433 G A CST1 3'UTR 0.24 TCGA-GN-A4U8-06 20 24646158 24646158 G A SYNDIG1 3'UTR 0.21 TCGA-GN-A4U8-06 20 24646159 24646159 G A SYNDIG1 3'UTR 0.21 TCGA-GN-A4U8-06 20 33590019 33590019 G A MYH7B 3'UTR 0.20 TCGA-GN-A4U8-06 20 35684614 35684614 C T RBL1 Missense_Mutation p.G433E 0.28 tolerated(1) benign(0.006) TCGA-GN-A4U8-06 20 35684615 35684615 C G RBL1 Missense_Mutation p.G433R 0.27 tolerated(0.08) benign(0.006) TCGA-GN-A4U8-06 20 36995416 36995416 C T LBP Missense_Mutation p.P309S 0.16 deleterious(0.02) possibly_damaging(0.856) TCGA-GN-A4U8-06 20 42344819 42344819 C T MYBL2 3'UTR 0.21 TCGA-GN-A4U8-06 20 43058294 43058294 G A HNF4A Missense_Mutation p.E472K 0.24 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-GN-A4U8-06 20 43108900 43108900 C T TTPAL Silent p.A87A 0.23 TCGA-GN-A4U8-06 20 43384943 43384943 A T RIMS4 Silent p.G215G 0.15 TCGA-GN-A4U8-06 20 43545480 43545480 C T PABPC1L Silent p.T157T 0.28 TCGA-GN-A4U8-06 20 45354860 45354860 C T SLC2A10 Silent p.L395L 0.28 TCGA-GN-A4U8-06 20 45354861 45354861 C T SLC2A10 Missense_Mutation p.P396S 0.27 tolerated(0.29) benign(0.011) TCGA-GN-A4U8-06 20 60937500 60937500 C T LAMA5 Missense_Mutation p.G136S 0.30 possibly_damaging(0.901) TCGA-GN-A4U8-06 20 62065171 62065171 G A KCNQ2 Missense_Mutation p.P370L 0.25 deleterious(0.03) probably_damaging(1) TCGA-GN-A4U8-06 21 18937831 18937831 C T CXADR Missense_Mutation p.P307S 0.20 deleterious(0.05) possibly_damaging(0.831) TCGA-GN-A4U8-06 21 22790850 22790850 A T NCAM2 Missense_Mutation p.I481L 0.26 tolerated(0.11) benign(0.04) TCGA-GN-A4U8-06 21 27945257 27945257 C T CYYR1 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) benign(0.072) TCGA-GN-A4U8-06 21 31066239 31066239 C T GRIK1 Missense_Mutation p.D88N 0.29 deleterious(0.02) benign(0.433) TCGA-GN-A4U8-06 21 37766889 37766889 G A CHAF1B Missense_Mutation p.G141E 0.25 deleterious(0) possibly_damaging(0.855) TCGA-GN-A4U8-06 21 41514491 41514491 C T DSCAM Missense_Mutation p.D1134N 0.24 tolerated(0.05) possibly_damaging(0.552) TCGA-GN-A4U8-06 21 43246329 43246329 G A PRDM15 Missense_Mutation p.P905L 0.27 deleterious(0.02) probably_damaging(0.921) TCGA-GN-A4U8-06 22 16256542 16256542 C T POTEH 3'UTR 0.09 TCGA-GN-A4U8-06 22 17073160 17073160 C T CCT8L2 Missense_Mutation p.G94E 0.30 deleterious(0) benign(0.002) TCGA-GN-A4U8-06 22 18769845 18769845 C T GGT3P Splice_Site 0.10 TCGA-GN-A4U8-06 22 29724793 29724793 G A AP1B1 3'UTR 0.35 TCGA-GN-A4U8-06 22 37398014 37398014 C T TEX33 Missense_Mutation p.G118E 0.23 deleterious(0.03) probably_damaging(0.969) TCGA-GN-A4U8-06 22 38245426 38245426 C T EIF3L 5'UTR 0.25 TCGA-GN-A4U8-06 22 42114232 42114232 C T MEI1 Silent p.S229S 0.18 TCGA-GN-A4U8-06 22 45312224 45312224 G A PHF21B Missense_Mutation p.T167I 0.31 tolerated(0.15) benign(0.398) TCGA-GN-A4U8-06 2 101099725 101099725 G A NMS Silent p.%3D 0.27 TCGA-GN-A4U8-06 2 112622497 112622497 A C ANAPC1 Silent p.V239V 0.23 TCGA-GN-A4U8-06 2 118698861 118698861 G A CCDC93 Nonsense_Mutation p.R476* 0.28 TCGA-GN-A4U8-06 2 119749443 119749443 G A MARCO Missense_Mutation p.G400E 0.25 deleterious(0.03) unknown(0) TCGA-GN-A4U8-06 2 128084364 128084364 G A MAP3K2 Missense_Mutation p.P166S 0.30 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 2 128392735 128392735 G A MYO7B Silent p.R1892R 0.23 TCGA-GN-A4U8-06 2 131785584 131785584 A T ARHGEF4 Missense_Mutation p.Y165F 0.18 tolerated(0.1) benign(0.053) TCGA-GN-A4U8-06 2 133540211 133540211 G T NCKAP5 Missense_Mutation p.F1391L 0.23 tolerated(0.63) benign(0) TCGA-GN-A4U8-06 2 138413176 138413176 G A THSD7B Missense_Mutation p.E1354K 0.27 deleterious(0.04) unknown(0) TCGA-GN-A4U8-06 2 179465714 179465714 C T TTN Silent p.V18639V 0.23 TCGA-GN-A4U8-06 2 179549403 179549403 G A TTN Silent p.L10876L 0.22 TCGA-GN-A4U8-06 2 179569999 179569999 C T TTN Missense_Mutation p.E9836K 0.32 TCGA-GN-A4U8-06 2 179584978 179584978 G A TTN Silent p.F7797F 0.22 TCGA-GN-A4U8-06 2 179594888 179594888 C T TTN Missense_Mutation p.G6080E 0.31 TCGA-GN-A4U8-06 2 179604270 179604270 C T TTN Missense_Mutation p.E4564K 0.28 TCGA-GN-A4U8-06 2 179611964 179611964 G A TTN Intron 0.25 TCGA-GN-A4U8-06 2 179613737 179613737 C T TTN Intron 0.29 TCGA-GN-A4U8-06 2 179615714 179615714 C T TTN Intron 0.23 TCGA-GN-A4U8-06 2 179732800 179732800 G T CCDC141 Missense_Mutation p.L843M 0.22 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 2 197122600 197122600 C T HECW2 Silent p.G1122G 0.20 TCGA-GN-A4U8-06 2 207583000 207583000 C T DYTN Missense_Mutation p.D2N 0.22 tolerated(0.13) possibly_damaging(0.564) TCGA-GN-A4U8-06 2 215279277 215279277 G A VWC2L Silent p.G120G 0.17 TCGA-GN-A4U8-06 2 218682926 218682926 C T TNS1 Missense_Mutation p.G1273S 0.30 tolerated(0.57) benign(0.021) TCGA-GN-A4U8-06 2 218682927 218682927 C T TNS1 Silent p.L1272L 0.29 TCGA-GN-A4U8-06 2 219508510 219508510 G A ZNF142 Missense_Mutation p.P910L 0.26 tolerated(0.12) possibly_damaging(0.713) TCGA-GN-A4U8-06 2 220167039 220167039 G A PTPRN Missense_Mutation p.L272F 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-GN-A4U8-06 2 220342127 220342127 G A SPEG Silent p.A1563A 0.27 TCGA-GN-A4U8-06 2 228767756 228767756 G A DAW1 Silent p.A193A 0.18 TCGA-GN-A4U8-06 2 234774970 234774970 C T MSL3P1 RNA 0.28 TCGA-GN-A4U8-06 2 241976279 241976279 C T SNED1 Missense_Mutation p.P293L 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 2 241991497 241991497 G A SNED1 Missense_Mutation p.G631D 0.35 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U8-06 2 28823722 28823722 G A PLB1 Missense_Mutation p.D841N 0.22 tolerated(0.06) benign(0.158) TCGA-GN-A4U8-06 2 31605981 31605981 C T XDH Silent p.V308V 0.42 TCGA-GN-A4U8-06 2 32476324 32476324 G A NLRC4 Silent p.L203L 0.29 TCGA-GN-A4U8-06 2 37480288 37480288 G A PRKD3 3'UTR 0.20 TCGA-GN-A4U8-06 2 38975790 38975790 C T SRSF7 Missense_Mutation p.R131Q 0.23 tolerated(0.26) unknown(0) TCGA-GN-A4U8-06 2 44049980 44049980 G A ABCG5 Silent p.P473P 0.29 TCGA-GN-A4U8-06 2 49381507 49381507 C T FSHR Missense_Mutation p.G17E 0.26 tolerated(0.18) benign(0.055) TCGA-GN-A4U8-06 2 64174578 64174578 A C VPS54 Missense_Mutation p.L395R 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-GN-A4U8-06 2 68872914 68872914 G A PROKR1 5'UTR 0.25 TCGA-GN-A4U8-06 2 74717484 74717484 C T TTC31 Missense_Mutation p.P116S 0.18 tolerated(0.15) benign(0.066) TCGA-GN-A4U8-06 2 86090557 86090557 G A ST3GAL5 Missense_Mutation p.P45L 0.23 deleterious_low_confidence(0.01) benign(0.344) TCGA-GN-A4U8-06 2 89197106 89197106 G A IGKV5-2 Missense_Mutation p.D51N 0.23 tolerated(1) benign(0.013) TCGA-GN-A4U8-06 2 89619842 89619842 G A IGKV1-39 Missense_Mutation p.P6S 0.11 tolerated(0.05) benign(0.256) TCGA-GN-A4U8-06 2 95497824 95497824 C T ANKRD20A8P RNA 0.27 TCGA-GN-A4U8-06 3 119190249 119190249 G A POGLUT1 Silent p.Q90Q 0.26 TCGA-GN-A4U8-06 3 120876451 120876451 C T STXBP5L Missense_Mutation p.P285L 0.24 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 3 126386065 126386065 C T NUP210P1 RNA 0.26 TCGA-GN-A4U8-06 3 131404763 131404763 G A CPNE4 Missense_Mutation p.R183C 0.25 deleterious(0.02) possibly_damaging(0.817) TCGA-GN-A4U8-06 3 133191246 133191246 C T BFSP2 Nonsense_Mutation p.Q361* 0.29 TCGA-GN-A4U8-06 3 14861545 14861545 G A FGD5 Missense_Mutation p.E323K 0.29 deleterious(0.01) benign(0.346) TCGA-GN-A4U8-06 3 150400023 150400023 G A FAM194A Silent p.S288S 0.24 TCGA-GN-A4U8-06 3 172491750 172491752 GAG - ECT2 In_Frame_Del p.E497del 0.32 TCGA-GN-A4U8-06 3 195492161 195492161 C T MUC4 Missense_Mutation p.R4593Q 0.24 possibly_damaging(0.857) TCGA-GN-A4U8-06 3 36779920 36779920 C T DCLK3 Silent p.G77G 0.28 TCGA-GN-A4U8-06 3 38835405 38835405 C T SCN10A Missense_Mutation p.G33R 0.31 tolerated(0.07) benign(0.017) TCGA-GN-A4U8-06 3 48459866 48459866 C T PLXNB1 Missense_Mutation p.G1014E 0.28 tolerated(0.63) probably_damaging(1) TCGA-GN-A4U8-06 3 48587554 48587554 G A PFKFB4 Missense_Mutation p.R71W 0.22 possibly_damaging(0.879) TCGA-GN-A4U8-06 3 50971419 50971419 G A DOCK3 Missense_Mutation p.E76K 0.23 deleterious(0) possibly_damaging(0.519) TCGA-GN-A4U8-06 3 54961971 54961971 C T LRTM1 5'UTR 0.25 TCGA-GN-A4U8-06 3 57232430 57232430 C T HESX1 Missense_Mutation p.D150N 0.22 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U8-06 3 58303203 58303203 A G RPP14 Missense_Mutation p.R119G 0.30 deleterious(0) possibly_damaging(0.889) TCGA-GN-A4U8-06 3 9730630 9730630 C T MTMR14 Nonsense_Mutation p.R433* 0.21 TCGA-GN-A4U8-06 4 158256856 158256856 G A GRIA2 Missense_Mutation p.E434K 0.23 tolerated(0.23) benign(0.087) TCGA-GN-A4U8-06 4 159092600 159092600 T C FAM198B 5'UTR 0.29 TCGA-GN-A4U8-06 4 167983660 167983660 C T SPOCK3 Missense_Mutation p.G76E 0.21 tolerated(0.61) benign(0.272) TCGA-GN-A4U8-06 4 1742685 1742688 AGAA - TACC3 Frame_Shift_Del p.K733Rfs*2 0.22 TCGA-GN-A4U8-06 4 183675624 183675624 C T TENM3 Silent p.I1368I 0.29 TCGA-GN-A4U8-06 4 22404390 22404390 C T GPR125 Silent p.A755A 0.33 TCGA-GN-A4U8-06 4 22749257 22749257 G A GBA3 Missense_Mutation p.D209N 0.31 tolerated(0.49) benign(0.01) TCGA-GN-A4U8-06 4 23815355 23815355 G A PPARGC1A Missense_Mutation p.S584F 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A4U8-06 4 41984123 41984123 G A DCAF4L1 Missense_Mutation p.R105Q 0.24 tolerated(0.33) benign(0.006) TCGA-GN-A4U8-06 4 4199453 4199453 G A OTOP1 Missense_Mutation p.R370W 0.25 tolerated(0.33) benign(0.009) TCGA-GN-A4U8-06 4 4199454 4199454 G A OTOP1 Silent p.I369I 0.25 TCGA-GN-A4U8-06 4 47954716 47954716 C T CNGA1 Missense_Mutation p.M70I 0.21 tolerated_low_confidence(0.06) benign(0) TCGA-GN-A4U8-06 4 52951089 52951089 C T SPATA18 Missense_Mutation p.S496L 0.31 deleterious(0.02) probably_damaging(0.947) TCGA-GN-A4U8-06 4 57181693 57181693 C T KIAA1211 Silent p.I675I 0.25 TCGA-GN-A4U8-06 4 6302764 6302764 C T WFS1 Silent p.F414F 0.27 TCGA-GN-A4U8-06 4 69095143 69095143 C T TMPRSS11B Missense_Mutation p.E260K 0.18 deleterious(0) possibly_damaging(0.876) TCGA-GN-A4U8-06 4 69536220 69536220 C T UGT2B15 Missense_Mutation p.M39I 0.26 tolerated(0.75) benign(0.013) TCGA-GN-A4U8-06 4 70146619 70146619 A T UGT2B28 Missense_Mutation p.K134M 0.25 deleterious(0.02) probably_damaging(0.976) TCGA-GN-A4U8-06 4 71201127 71201127 C T CABS1 Missense_Mutation p.S124L 0.27 deleterious(0.03) possibly_damaging(0.895) TCGA-GN-A4U8-06 4 71508455 71508455 G A ENAM Missense_Mutation p.E438K 0.14 tolerated(0.08) possibly_damaging(0.767) TCGA-GN-A4U8-06 4 80328580 80328580 C T GK2 Missense_Mutation p.D259N 0.23 tolerated(0.1) probably_damaging(1) TCGA-GN-A4U8-06 4 995265 995265 G A IDUA Missense_Mutation p.G168E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 4 997863 997863 G C IDUA Missense_Mutation p.R597S 0.28 tolerated(0.71) benign(0.043) TCGA-GN-A4U8-06 5 121799317 121799317 G A SNCAIP 3'UTR 0.41 TCGA-GN-A4U8-06 5 123982691 123982691 C T ZNF608 Missense_Mutation p.R1129K 0.25 tolerated(1) probably_damaging(0.986) TCGA-GN-A4U8-06 5 127469919 127469919 C T SLC12A2 Silent p.V417V 0.25 TCGA-GN-A4U8-06 5 134118747 134118747 C T DDX46 Silent p.S386S 0.23 TCGA-GN-A4U8-06 5 13700919 13700919 G A DNAH5 Missense_Mutation p.T4518I 0.25 possibly_damaging(0.803) TCGA-GN-A4U8-06 5 13737499 13737499 C T DNAH5 Missense_Mutation p.G3773R 0.25 probably_damaging(0.988) TCGA-GN-A4U8-06 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.34 TCGA-GN-A4U8-06 5 13913897 13913897 T C DNAH5 Silent p.Q497Q 0.29 TCGA-GN-A4U8-06 5 139884529 139884529 C T ANKHD1 Missense_Mutation p.P1043L 0.26 unknown(0) TCGA-GN-A4U8-06 5 140243037 140243037 G A AC005609.1 5'UTR 0.19 TCGA-GN-A4U8-06 5 140558982 140558982 C T PCDHB8 Missense_Mutation p.S456F 0.14 deleterious_low_confidence(0.01) benign(0.015) TCGA-GN-A4U8-06 5 140737079 140737079 C T PCDHGA4 Missense_Mutation p.S771F 0.19 deleterious_low_confidence(0) benign(0.396) TCGA-GN-A4U8-06 5 140773097 140773097 C T PCDHGA8 Silent p.A239A 0.19 TCGA-GN-A4U8-06 5 141248397 141248397 G A PCDH1 Nonsense_Mutation p.Q214* 0.26 TCGA-GN-A4U8-06 5 145847964 145847964 C T TCERG1 Missense_Mutation p.T399I 0.26 deleterious(0.03) unknown(0) TCGA-GN-A4U8-06 5 146703479 146703479 G A STK32A Silent p.E93E 0.21 TCGA-GN-A4U8-06 5 150133177 150133177 G A DCTN4 Silent p.L83L 0.24 TCGA-GN-A4U8-06 5 153077667 153077667 G A GRIA1 Missense_Mutation p.D410N 0.25 tolerated(0.18) benign(0.197) TCGA-GN-A4U8-06 5 156592658 156592658 G A FAM71B Silent p.L174L 0.22 TCGA-GN-A4U8-06 5 156760448 156760448 C T CYFIP2 Silent p.S767S 0.27 TCGA-GN-A4U8-06 5 170814963 170814963 C T NPM1 Missense_Mutation p.S4L 0.21 tolerated(0.23) benign(0.005) TCGA-GN-A4U8-06 5 178556940 178556940 G A ADAMTS2 Missense_Mutation p.T817I 0.23 tolerated(0.55) benign(0.014) TCGA-GN-A4U8-06 5 179546359 179546359 G A RASGEF1C Silent p.L298L 0.29 TCGA-GN-A4U8-06 5 24488111 24488111 C T CDH10 Silent p.R676R 0.28 TCGA-GN-A4U8-06 5 26906079 26906079 C T CDH9 Missense_Mutation p.R267Q 0.29 deleterious(0.02) benign(0.033) TCGA-GN-A4U8-06 5 37186482 37186482 G A C5orf42 Silent p.F1365F 0.20 TCGA-GN-A4U8-06 5 42695153 42695153 G A GHR Missense_Mutation p.G134D 0.31 tolerated(0.65) benign(0.01) TCGA-GN-A4U8-06 5 49724043 49724043 G A EMB Missense_Mutation p.P44L 0.28 tolerated(0.17) benign(0) TCGA-GN-A4U8-06 5 50111326 50111326 G A PARP8 Missense_Mutation p.E546K 0.32 tolerated(0.06) possibly_damaging(0.69) TCGA-GN-A4U8-06 5 63905087 63905087 C T RGS7BP 3'UTR 0.23 TCGA-GN-A4U8-06 5 64867904 64867904 C T PPWD1 Missense_Mutation p.P254S 0.23 tolerated(0.92) benign(0.108) TCGA-GN-A4U8-06 5 64867905 64867905 C T PPWD1 Missense_Mutation p.P254L 0.22 tolerated(0.26) benign(0.108) TCGA-GN-A4U8-06 5 66259532 66259532 C T MAST4 Intron 0.33 TCGA-GN-A4U8-06 5 72424277 72424277 C T TMEM171 Missense_Mutation p.S234F 0.24 deleterious(0.03) possibly_damaging(0.812) TCGA-GN-A4U8-06 5 74324403 74324403 G A GCNT4 3'UTR 0.26 TCGA-GN-A4U8-06 5 79743954 79743954 C T ZFYVE16 Missense_Mutation p.P945L 0.27 deleterious(0.03) benign(0.073) TCGA-GN-A4U8-06 5 89938513 89938513 G A GPR98 Silent p.L767L 0.28 TCGA-GN-A4U8-06 5 95226815 95226815 C A ELL2 Nonsense_Mutation p.E585* 0.23 TCGA-GN-A4U8-06 6 116757492 116757492 G A DSE Missense_Mutation p.D621N 0.38 tolerated(0.06) possibly_damaging(0.864) TCGA-GN-A4U8-06 6 160679691 160679691 G A SLC22A2 Silent p.F33F 0.40 TCGA-GN-A4U8-06 6 25770609 25770609 C T SLC17A4 Intron 0.18 TCGA-GN-A4U8-06 6 28542702 28542702 G A SCAND3 Missense_Mutation p.P594S 0.17 tolerated_low_confidence(0.36) benign(0.001) TCGA-GN-A4U8-06 6 29141959 29141959 C T OR2J2 Missense_Mutation p.P183S 0.26 deleterious(0) probably_damaging(0.995) TCGA-GN-A4U8-06 6 2948603 2948603 G A SERPINB6 Missense_Mutation p.P354S 0.21 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 6 2948850 2948850 G A SERPINB6 Silent p.L271L 0.23 TCGA-GN-A4U8-06 6 29627133 29627133 G A MOG Silent p.R42R 0.22 TCGA-GN-A4U8-06 6 30114951 30114951 A C TRIM40 Silent p.R182R 0.27 TCGA-GN-A4U8-06 6 30680869 30680869 G A MDC1 Missense_Mutation p.P284S 0.26 tolerated(0.12) probably_damaging(0.994) TCGA-GN-A4U8-06 6 32261073 32261073 C T C6orf10 Silent p.K459K 0.28 TCGA-GN-A4U8-06 6 35108525 35108525 G - TCP11 Frame_Shift_Del p.L56Ffs*6 0.17 TCGA-GN-A4U8-06 6 35108527 35108527 G A TCP11 Missense_Mutation p.P54S 0.17 tolerated(0.57) benign(0.003) TCGA-GN-A4U8-06 6 35443834 35443834 C T TEAD3 Silent p.T254T 0.21 TCGA-GN-A4U8-06 6 35473545 35473545 C T TULP1 Missense_Mutation p.G362E 0.17 tolerated(0.16) probably_damaging(0.935) TCGA-GN-A4U8-06 6 36931644 36931644 C T PI16 Missense_Mutation p.S439L 0.26 tolerated_low_confidence(0.06) benign(0.103) TCGA-GN-A4U8-06 6 37186390 37186390 G A TMEM217 Silent p.H139H 0.24 TCGA-GN-A4U8-06 6 38862525 38862525 C T DNAH8 Nonsense_Mutation p.R2661* 0.25 TCGA-GN-A4U8-06 6 40359532 40359532 G T LRFN2 3'UTR 0.40 TCGA-GN-A4U8-06 6 40359533 40359533 G A LRFN2 3'UTR 0.36 TCGA-GN-A4U8-06 6 40360450 40360450 C T LRFN2 Missense_Mutation p.M534I 0.29 tolerated(0.08) benign(0.074) TCGA-GN-A4U8-06 6 43266441 43266441 G A SLC22A7 Silent p.Q115Q 0.23 TCGA-GN-A4U8-06 6 44218052 44218052 A G HSP90AB1 Missense_Mutation p.I225V 0.22 tolerated(1) benign(0.002) TCGA-GN-A4U8-06 6 49668497 49668497 C T CRISP2 Missense_Mutation p.D23N 0.24 tolerated(0.32) benign(0.026) TCGA-GN-A4U8-06 6 4995314 4995314 A T RPP40 Nonstop_Mutation p.*364Kext*65 0.25 TCGA-GN-A4U8-06 6 62390825 62390831 CTATGAA - KHDRBS2 3'UTR 0.38 TCGA-GN-A4U8-06 6 74351534 74351534 C A SLC17A5 Silent p.G135G 0.40 TCGA-GN-A4U8-06 6 88853492 88853492 T G CNR1 3'UTR 0.41 TCGA-GN-A4U8-06 7 110303777 110303777 C T IMMP2L Missense_Mutation p.V137I 0.15 tolerated(0.39) benign(0.004) TCGA-GN-A4U8-06 7 110763663 110763663 G A LRRN3 Missense_Mutation p.D279N 0.26 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 7 116397530 116397530 C T MET Silent p.F634F 0.25 TCGA-GN-A4U8-06 7 122338449 122338449 G A RNF133 Missense_Mutation p.A175V 0.25 tolerated(0.66) benign(0.001) TCGA-GN-A4U8-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-GN-A4U8-06 7 141722186 141722186 G A MGAM Missense_Mutation p.D277N 0.52 tolerated(0.22) benign(0.037) TCGA-GN-A4U8-06 7 142143766 142143766 C T TRBV6-7 Missense_Mutation p.G77E 0.48 deleterious(0.03) probably_damaging(0.977) TCGA-GN-A4U8-06 7 143510226 143510226 C T RP11-61L23.2 RNA 0.26 TCGA-GN-A4U8-06 7 149174025 149174025 C T ZNF746 Missense_Mutation p.A276T 0.24 tolerated(0.28) probably_damaging(0.981) TCGA-GN-A4U8-06 7 150647238 150647238 C T KCNH2 Intron 0.51 TCGA-GN-A4U8-06 7 155493559 155493559 C T RBM33 Silent p.F220F 0.62 TCGA-GN-A4U8-06 7 157000156 157000156 C T UBE3C Nonsense_Mutation p.R495* 0.25 TCGA-GN-A4U8-06 7 21646061 21646061 G A DNAH11 Nonsense_Mutation p.W1222* 0.12 TCGA-GN-A4U8-06 7 27187306 27187306 G A HOXA6 Silent p.F21F 0.21 TCGA-GN-A4U8-06 7 30721619 30721619 G A CRHR2 Silent p.I74I 0.19 TCGA-GN-A4U8-06 7 43484616 43484616 G A HECW1 Silent p.E615E 0.12 TCGA-GN-A4U8-06 7 44556925 44556925 C T NPC1L1 Silent p.L1083L 0.23 TCGA-GN-A4U8-06 7 5430102 5430102 G A TNRC18 Intron 0.11 TCGA-GN-A4U8-06 7 82586136 82586136 G A PCLO Missense_Mutation p.P1378L 0.30 unknown(0) TCGA-GN-A4U8-06 7 87780588 87780588 G A ADAM22 Missense_Mutation p.G545E 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 7 88964547 88964547 G C ZNF804B Missense_Mutation p.E751Q 0.19 deleterious(0.01) possibly_damaging(0.804) TCGA-GN-A4U8-06 7 92826893 92826893 G A HEPACAM2 Missense_Mutation p.S348L 0.21 tolerated(0.06) benign(0.424) TCGA-GN-A4U8-06 7 92848781 92848781 G A HEPACAM2 Intron 0.25 TCGA-GN-A4U8-06 7 99170003 99170003 A C ZNF655 Missense_Mutation p.K126T 0.26 deleterious(0.01) possibly_damaging(0.504) TCGA-GN-A4U8-06 8 103307719 103307719 C T UBR5 Missense_Mutation p.R1285K 0.17 deleterious(0) possibly_damaging(0.867) TCGA-GN-A4U8-06 8 104388038 104388038 C T CTHRC1 Missense_Mutation p.P75S 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-GN-A4U8-06 8 104898359 104898359 C T RIMS2 Missense_Mutation p.S511L 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GN-A4U8-06 8 104948833 104948833 G A RIMS2 Nonsense_Mutation p.W810* 0.49 TCGA-GN-A4U8-06 8 110100173 110100173 G A TRHR Silent p.K144K 0.13 TCGA-GN-A4U8-06 8 110437354 110437354 G A PKHD1L1 Missense_Mutation p.G913E 0.52 tolerated(0.12) possibly_damaging(0.489) TCGA-GN-A4U8-06 8 110460428 110460428 G A PKHD1L1 Missense_Mutation p.E1945K 0.20 tolerated(0.52) benign(0.032) TCGA-GN-A4U8-06 8 117768056 117768056 G A EIF3H 5'UTR 0.28 TCGA-GN-A4U8-06 8 132999853 132999853 G A EFR3A Missense_Mutation p.D657N 0.47 tolerated(0.51) benign(0.002) TCGA-GN-A4U8-06 8 141034147 141034147 G C TRAPPC9 Nonsense_Mutation p.Y960* 0.16 TCGA-GN-A4U8-06 8 16001103 16001103 C T MSR1 Missense_Mutation p.G333S 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 8 27320678 27320678 G A CHRNA2 Missense_Mutation p.H428Y 0.26 tolerated(0.92) benign(0.004) TCGA-GN-A4U8-06 8 28575527 28575527 C T EXTL3 Nonsense_Mutation p.Q651* 0.25 TCGA-GN-A4U8-06 8 38845590 38845590 G A HTRA4 Silent p.L468L 0.27 TCGA-GN-A4U8-06 8 41806783 41806783 G A KAT6A Missense_Mutation p.P566L 0.34 probably_damaging(0.981) TCGA-GN-A4U8-06 8 42042667 42042667 G A PLAT Missense_Mutation p.P188L 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A4U8-06 8 57128950 57128950 C T CHCHD7 Intron 0.21 TCGA-GN-A4U8-06 8 6357405 6357405 T C MCPH1 Silent p.I723I 0.27 TCGA-GN-A4U8-06 8 64099080 64099080 G A YTHDF3 Missense_Mutation p.A170T 0.19 tolerated(0.98) benign(0.122) TCGA-GN-A4U8-06 8 77765901 77765901 C T ZFHX4 Silent p.N2248N 0.19 TCGA-GN-A4U8-06 8 77767021 77767021 G A ZFHX4 Missense_Mutation p.E2622K 0.17 probably_damaging(0.979) TCGA-GN-A4U8-06 8 95653585 95653585 G A ESRP1 Silent p.G13G 0.25 TCGA-GN-A4U8-06 9 104133271 104133271 C T BAAT Missense_Mutation p.R139Q 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A4U8-06 9 104433302 104433302 G A GRIN3A Silent p.F464F 0.24 TCGA-GN-A4U8-06 9 114842369 114842369 C T SUSD1 Missense_Mutation p.M517I 0.20 tolerated(0.78) benign(0) TCGA-GN-A4U8-06 9 127618829 127618829 G A WDR38 Missense_Mutation p.G190R 0.23 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U8-06 9 13150516 13150516 G A MPDZ Silent p.I1208I 0.29 TCGA-GN-A4U8-06 9 133748267 133748267 C A ABL1 Missense_Mutation p.P329T 0.19 deleterious(0) probably_damaging(0.998) TCGA-GN-A4U8-06 9 133748268 133748268 C T ABL1 Missense_Mutation p.P329L 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A4U8-06 9 139277831 139277831 G A SNAPC4 Missense_Mutation p.S597F 0.26 tolerated(0.19) benign(0.009) TCGA-GN-A4U8-06 9 21187099 21187099 C T IFNA4 Silent p.R144R 0.25 TCGA-GN-A4U8-06 9 35562962 35562962 C T FAM166B Silent p.K134K 0.27 TCGA-GN-A4U8-06 9 37740711 37740711 G A FRMPD1 Missense_Mutation p.R729Q 0.22 tolerated(0.24) benign(0.018) TCGA-GN-A4U8-06 9 4572216 4572216 G A SLC1A1 Missense_Mutation p.E199K 0.22 tolerated(0.12) benign(0.392) TCGA-GN-A4U8-06 9 5164230 5164230 C T INSL6 Missense_Mutation p.E109K 0.19 tolerated(0.44) possibly_damaging(0.874) TCGA-GN-A4U8-06 9 6620311 6620311 C T GLDC Missense_Mutation p.E115K 0.22 tolerated(0.08) possibly_damaging(0.559) TCGA-GN-A4U8-06 9 66459899 66459899 C T RP11-262H14.1 RNA 0.19 TCGA-GN-A4U8-06 9 66468696 66468696 G A RP11-262H14.1 RNA 0.27 TCGA-GN-A4U8-06 9 70917895 70917895 C T FOXD4L3 Missense_Mutation p.R10C 0.12 tolerated_low_confidence(0.06) benign(0.007) TCGA-GN-A4U8-06 9 73736300 73736300 C T TRPM3 5'UTR 0.32 TCGA-GN-A4U8-06 X 106482197 106482197 G A PIH1D3 Missense_Mutation p.D159N 0.34 tolerated(0.09) possibly_damaging(0.651) TCGA-GN-A4U8-06 X 135431406 135431406 C T GPR112 Silent p.I1847I 0.37 TCGA-GN-A4U8-06 X 138698587 138698587 C T MCF2 Missense_Mutation p.E409K 0.44 tolerated(0.11) benign(0.271) TCGA-GN-A4U8-06 X 142596670 142596670 A T SPANXN3 Missense_Mutation p.S134T 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-GN-A4U8-06 X 152858169 152858169 G A FAM58A Missense_Mutation p.S149F 0.59 deleterious(0.05) benign(0.209) TCGA-GN-A4U8-06 X 153221832 153221832 G A HCFC1 Missense_Mutation p.T889I 0.53 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-GN-A4U8-06 X 27998305 27998305 G A DCAF8L1 Missense_Mutation p.H383Y 0.44 deleterious(0) benign(0.358) TCGA-GN-A4U8-06 X 34961290 34961290 G A FAM47B Silent p.R114R 0.47 TCGA-GN-A4U8-06 X 35944206 35944206 C T CXorf22 Missense_Mutation p.H108Y 0.53 tolerated(0.36) possibly_damaging(0.862) TCGA-GN-A4U8-06 X 35993386 35993386 C T CXorf22 Nonsense_Mutation p.Q793* 0.57 TCGA-GN-A4U8-06 X 37652981 37652981 C T CYBB Missense_Mutation p.S134F 0.55 tolerated(0.05) possibly_damaging(0.653) TCGA-GN-A4U8-06 X 37969634 37969634 G A SYTL5 Missense_Mutation p.D521N 0.52 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U8-06 X 54117842 54117842 G A FAM120C Missense_Mutation p.P777L 0.54 deleterious(0) probably_damaging(0.913) TCGA-GN-A4U8-06 X 56296747 56296747 C T KLF8 Silent p.I297I 0.56 TCGA-GN-A4U8-06 X 5821654 5821654 G A NLGN4X Silent p.I355I 0.44 TCGA-GN-A4U8-06 X 83116188 83116188 G A CYLC1 5'UTR 0.46 TCGA-GN-A4U8-06 X 84362659 84362659 C T SATL1 Missense_Mutation p.R439Q 0.53 tolerated(0.74) benign(0.099) TCGA-GN-A4U9-06 10 135010589 135010589 G T KNDC1 Missense_Mutation p.G588C 0.52 deleterious(0) probably_damaging(0.956) TCGA-GN-A4U9-06 10 15726039 15726039 A T ITGA8 Missense_Mutation p.F178I 0.39 tolerated(0.16) probably_damaging(0.999) TCGA-GN-A4U9-06 10 50532116 50532116 G A C10orf71 Missense_Mutation p.R509H 0.39 tolerated(0.11) benign(0.051) TCGA-GN-A4U9-06 10 50953532 50953532 C T OGDHL Missense_Mutation p.R496H 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A4U9-06 11 124007882 124007882 A C VWA5A Missense_Mutation p.N596H 0.43 deleterious(0.03) benign(0.091) TCGA-GN-A4U9-06 11 125472307 125472307 A T STT3A Missense_Mutation p.T87S 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-GN-A4U9-06 11 71724439 71724439 C T NUMA1 Silent p.L1370L 0.23 TCGA-GN-A4U9-06 12 104698185 104698185 C T EID3 Missense_Mutation p.A158V 0.30 tolerated(0.06) possibly_damaging(0.609) TCGA-GN-A4U9-06 12 115120653 115120653 T C TBX3 Missense_Mutation p.K118R 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A4U9-06 12 21350059 21350059 G A SLCO1B1 Missense_Mutation p.D303N 0.30 tolerated(0.15) possibly_damaging(0.568) TCGA-GN-A4U9-06 12 57910912 57910912 T G DDIT3 Missense_Mutation p.T87P 0.68 tolerated(0.21) possibly_damaging(0.572) TCGA-GN-A4U9-06 14 92461742 92461742 A G TRIP11 Silent p.A1670A 0.12 TCGA-GN-A4U9-06 15 24922991 24922991 T G NPAP1 Silent p.A659A 0.58 TCGA-GN-A4U9-06 15 28261293 28261293 T C OCA2 Missense_Mutation p.S283G 0.36 tolerated(0.06) benign(0.011) TCGA-GN-A4U9-06 15 49860489 49860489 T C FAM227B Missense_Mutation p.T234A 0.58 tolerated(0.18) benign(0.009) TCGA-GN-A4U9-06 15 59064076 59064076 G C FAM63B Missense_Mutation p.C161S 0.14 tolerated_low_confidence(0.62) benign(0.013) TCGA-GN-A4U9-06 15 65946280 65946280 G T SLC24A1 Missense_Mutation p.V1055L 0.12 probably_damaging(0.963) TCGA-GN-A4U9-06 15 66190172 66190172 G T MEGF11 3'UTR 0.32 TCGA-GN-A4U9-06 15 90982589 90982589 G A IQGAP1 Missense_Mutation p.A165T 0.65 deleterious(0) possibly_damaging(0.642) TCGA-GN-A4U9-06 16 2028390 2028390 G T TBL3 Silent p.V737V 0.20 TCGA-GN-A4U9-06 17 27434147 27434147 T C MYO18A Missense_Mutation p.H1131R 0.25 tolerated(0.3) probably_damaging(0.999) TCGA-GN-A4U9-06 17 53037958 53037958 C T TOM1L1 Missense_Mutation p.H468Y 0.27 tolerated(0.97) benign(0.001) TCGA-GN-A4U9-06 17 74569286 74569286 T C ST6GALNAC2 Missense_Mutation p.Y174C 0.12 benign(0.248) TCGA-GN-A4U9-06 17 7708594 7708594 G A DNAH2 Missense_Mutation p.D3109N 0.36 probably_damaging(1) TCGA-GN-A4U9-06 19 16910916 16910916 G A NWD1 Missense_Mutation p.V1227I 0.39 tolerated(0.11) benign(0.1) TCGA-GN-A4U9-06 19 17476978 17476978 G A PLVAP Silent p.Y132Y 0.07 TCGA-GN-A4U9-06 19 37619738 37619738 T C ZNF420 Silent p.Y615Y 0.25 TCGA-GN-A4U9-06 19 39016026 39016026 T G RYR1 Missense_Mutation p.S3504A 0.26 benign(0.012) TCGA-GN-A4U9-06 19 49254345 49254345 T C FUT1 Missense_Mutation p.N65S 0.22 tolerated(0.14) benign(0.3) TCGA-GN-A4U9-06 19 49340606 49340606 G A PLEKHA4 Silent p.V760V 0.20 TCGA-GN-A4U9-06 19 52131311 52131311 G A SIGLEC5 Missense_Mutation p.P258L 0.27 tolerated(0.98) benign(0.01) TCGA-GN-A4U9-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.62 tolerated(0.06) benign(0.006) TCGA-GN-A4U9-06 1 11897422 11897422 T C CLCN6 Missense_Mutation p.Y721H 0.31 tolerated(0.33) benign(0.372) TCGA-GN-A4U9-06 1 149907017 149907017 G A MTMR11 Silent p.S110S 0.15 TCGA-GN-A4U9-06 1 156821441 156821441 C T INSRR Missense_Mutation p.G361S 0.07 deleterious(0.02) probably_damaging(0.911) TCGA-GN-A4U9-06 1 159175977 159175977 T C DARC Missense_Mutation p.F252L 0.17 deleterious(0) probably_damaging(0.997) TCGA-GN-A4U9-06 1 168282089 168282089 C A TBX19 Missense_Mutation p.A399E 0.15 deleterious_low_confidence(0.02) benign(0.005) TCGA-GN-A4U9-06 1 179983174 179983174 G T CEP350 Missense_Mutation p.R529L 0.31 probably_damaging(0.96) TCGA-GN-A4U9-06 1 21940511 21940511 G A RAP1GAP Silent p.I185I 0.37 TCGA-GN-A4U9-06 1 233296129 233296130 - A PCNXL2 Frame_Shift_Ins p.T1140Nfs*52 0.20 TCGA-GN-A4U9-06 1 236689351 236689351 C A LGALS8 5'UTR 0.15 TCGA-GN-A4U9-06 1 248813640 248813640 A G OR2T27 Silent p.P182P 0.16 TCGA-GN-A4U9-06 1 38455594 38455594 T C SF3A3 Missense_Mutation p.K15R 0.58 tolerated(0.58) benign(0.001) TCGA-GN-A4U9-06 1 44447428 44447428 C T B4GALT2 Silent p.G156G 0.20 TCGA-GN-A4U9-06 1 45120842 45120842 C G TMEM53 Missense_Mutation p.V75L 0.18 tolerated(0.22) possibly_damaging(0.649) TCGA-GN-A4U9-06 20 15913923 15913923 G A MACROD2 Missense_Mutation p.E260K 0.13 tolerated(0.1) possibly_damaging(0.795) TCGA-GN-A4U9-06 20 36028624 36028624 T C SRC Silent p.H322H 0.12 TCGA-GN-A4U9-06 20 49510900 49510900 G A ADNP Silent p.D117D 0.06 TCGA-GN-A4U9-06 22 29927851 29927851 A C THOC5 Missense_Mutation p.F272L 0.55 deleterious(0.04) possibly_damaging(0.787) TCGA-GN-A4U9-06 2 17698929 17698929 T C RAD51AP2 Missense_Mutation p.R252G 0.17 tolerated(0.14) benign(0.038) TCGA-GN-A4U9-06 2 239040199 239040199 C T ESPNL Silent p.L948L 0.38 TCGA-GN-A4U9-06 3 101476781 101476781 A G CEP97 Missense_Mutation p.E444G 0.43 tolerated(0.06) benign(0.012) TCGA-GN-A4U9-06 4 153253809 153253809 A T FBXW7 Nonsense_Mutation p.C308* 0.24 TCGA-GN-A4U9-06 4 15614017 15614017 C A FBXL5 Missense_Mutation p.G624V 0.22 deleterious(0.01) probably_damaging(1) TCGA-GN-A4U9-06 4 158224770 158224770 C G GRIA2 Missense_Mutation p.T99S 0.23 deleterious(0) benign(0.359) TCGA-GN-A4U9-06 4 166388891 166388891 G T CPE Missense_Mutation p.D186Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-GN-A4U9-06 4 71691020 71691020 G A GRSF1 Silent p.S462S 0.09 TCGA-GN-A4U9-06 5 13870934 13870934 G A DNAH5 Missense_Mutation p.A1259V 0.14 possibly_damaging(0.499) TCGA-GN-A4U9-06 5 140554656 140554656 A G PCDHB7 Missense_Mutation p.Y747C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-GN-A4U9-06 5 161302645 161302645 A C GABRA1 Missense_Mutation p.S186R 0.18 deleterious(0) benign(0.165) TCGA-GN-A4U9-06 5 168176494 168176494 T A SLIT3 Missense_Mutation p.Q707L 0.25 tolerated(0.36) benign(0.247) TCGA-GN-A4U9-06 5 176939832 176939832 C T DDX41 Missense_Mutation p.E450K 0.20 deleterious(0) probably_damaging(0.926) TCGA-GN-A4U9-06 5 179545806 179545806 G C RASGEF1C Missense_Mutation p.A323G 0.23 tolerated(0.08) possibly_damaging(0.777) TCGA-GN-A4U9-06 6 139262535 139262535 C T REPS1 Missense_Mutation p.D358N 0.49 tolerated(0.09) probably_damaging(0.999) TCGA-GN-A4U9-06 6 147124270 147124270 C T ADGB Intron 0.40 TCGA-GN-A4U9-06 6 158093953 158093953 G A ZDHHC14 Silent p.T422T 0.31 TCGA-GN-A4U9-06 6 28500111 28500111 G T GPX5 Missense_Mutation p.G125W 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A4U9-06 6 31691431 31691431 G A C6orf25 Missense_Mutation p.R26H 0.15 tolerated_low_confidence(0.19) benign(0.007) TCGA-GN-A4U9-06 6 33632866 33632866 T G ITPR3 Missense_Mutation p.F429V 0.15 deleterious(0) probably_damaging(0.943) TCGA-GN-A4U9-06 6 43182949 43182949 C T CUL9 Missense_Mutation p.R1941W 0.22 deleterious(0) probably_damaging(0.978) TCGA-GN-A4U9-06 6 69646512 69646512 A T BAI3 Missense_Mutation p.T324S 0.31 deleterious(0.05) benign(0.112) TCGA-GN-A4U9-06 7 102114809 102114809 C A POLR2J Missense_Mutation p.R106L 0.10 tolerated(0.06) benign(0.015) TCGA-GN-A4U9-06 7 138738782 138738782 A C ZC3HAV1 Silent p.A749A 0.35 TCGA-GN-A4U9-06 7 142224278 142224278 G T TRBV11-1 5'UTR 0.13 TCGA-GN-A4U9-06 7 147183081 147183081 C G CNTNAP2 Missense_Mutation p.S575R 0.07 deleterious(0) benign(0.388) TCGA-GN-A4U9-06 7 63727222 63727222 G T ZNF679 Missense_Mutation p.G404V 0.11 deleterious(0) probably_damaging(1) TCGA-GN-A4U9-06 7 95799415 95799415 T G SLC25A13 Missense_Mutation p.K419T 0.18 deleterious(0.04) benign(0.275) TCGA-GN-A4U9-06 9 140138224 140138224 G T FAM166A Nonsense_Mutation p.Y294* 0.10 TCGA-GN-A8LK-06 10 100017816 100017816 T C LOXL4 Missense_Mutation p.I343V 0.58 tolerated(1) benign(0.002) TCGA-GN-A8LK-06 10 102248633 102248633 G A SEC31B Silent p.S1090S 0.27 TCGA-GN-A8LK-06 10 102739977 102739977 G A SEMA4G Silent p.R409R 0.39 TCGA-GN-A8LK-06 10 103436179 103436179 G A FBXW4 Missense_Mutation p.P92L 0.63 deleterious(0) benign(0.081) TCGA-GN-A8LK-06 10 103436187 103436187 G A FBXW4 Silent p.T89T 0.37 TCGA-GN-A8LK-06 10 104160707 104160707 C T NFKB2 Missense_Mutation p.R658W 0.57 deleterious(0.02) possibly_damaging(0.766) TCGA-GN-A8LK-06 10 104593830 104593830 C T CYP17A1 Missense_Mutation p.R239Q 0.19 deleterious(0) probably_damaging(0.919) TCGA-GN-A8LK-06 10 105331323 105331323 C A NEURL1 Silent p.S131S 0.46 TCGA-GN-A8LK-06 10 105331324 105331324 C T NEURL1 Missense_Mutation p.R132C 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A8LK-06 10 105779652 105779652 C T SLK Missense_Mutation p.P1098L 0.37 deleterious(0) probably_damaging(0.936) TCGA-GN-A8LK-06 10 105953616 105953616 G A WDR96 Intron 0.44 TCGA-GN-A8LK-06 10 105985277 105985277 A T WDR96 Missense_Mutation p.Y120N 0.60 tolerated(0.12) benign(0.094) TCGA-GN-A8LK-06 10 1061779 1061779 C T GTPBP4 Silent p.A565A 0.43 TCGA-GN-A8LK-06 10 106976733 106976733 G A SORCS3 Missense_Mutation p.D863N 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 10 108339147 108339147 G A SORCS1 Silent p.F1117F 0.45 TCGA-GN-A8LK-06 10 112839129 112839129 G A ADRA2A Missense_Mutation p.G459R 0.35 tolerated(0.75) possibly_damaging(0.61) TCGA-GN-A8LK-06 10 115384591 115384591 G A NRAP Silent p.L781L 0.41 TCGA-GN-A8LK-06 10 115385849 115385849 G A NRAP Missense_Mutation p.S734F 0.59 deleterious(0.05) possibly_damaging(0.892) TCGA-GN-A8LK-06 10 115406727 115406727 A T NRAP Silent p.T316T 0.40 TCGA-GN-A8LK-06 10 115536938 115536938 C T PLEKHS1 Missense_Mutation p.H363Y 0.58 tolerated(0.06) possibly_damaging(0.749) TCGA-GN-A8LK-06 10 117061425 117061425 C T ATRNL1 Missense_Mutation p.S897F 0.54 deleterious(0.02) possibly_damaging(0.878) TCGA-GN-A8LK-06 10 117075237 117075237 C T ATRNL1 Nonsense_Mutation p.Q1010* 0.46 TCGA-GN-A8LK-06 10 117885057 117885057 G A GFRA1 Missense_Mutation p.P149S 0.48 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 10 121203146 121203146 C T GRK5 Missense_Mutation p.S383L 0.44 deleterious(0.05) probably_damaging(0.982) TCGA-GN-A8LK-06 10 121551497 121551497 C T INPP5F Silent p.S187S 0.45 TCGA-GN-A8LK-06 10 123844357 123844357 C T TACC2 Missense_Mutation p.P781L 0.30 benign(0.051) TCGA-GN-A8LK-06 10 123844361 123844361 C T TACC2 Silent p.P782P 0.32 TCGA-GN-A8LK-06 10 124013672 124013672 C T TACC2 3'UTR 0.58 TCGA-GN-A8LK-06 10 124049455 124049455 C T BTBD16 Silent p.S139S 0.31 TCGA-GN-A8LK-06 10 124591835 124591835 G A CUZD1 Nonsense_Mutation p.Q595* 0.30 TCGA-GN-A8LK-06 10 126490351 126490351 G A FAM175B 5'Flank 0.53 TCGA-GN-A8LK-06 10 12870859 12870859 G A CAMK1D Silent p.V377V 0.71 TCGA-GN-A8LK-06 10 129152948 129152948 G A DOCK1 Silent p.R1059R 0.61 TCGA-GN-A8LK-06 10 129902349 129902349 G A MKI67 Silent p.P2585P 0.47 TCGA-GN-A8LK-06 10 13213218 13213218 C T MCM10 Missense_Mutation p.P102S 0.24 tolerated_low_confidence(0.21) benign(0.008) TCGA-GN-A8LK-06 10 133954019 133954019 C T JAKMIP3 Missense_Mutation p.S470F 0.16 deleterious(0.02) benign(0.345) TCGA-GN-A8LK-06 10 134022569 134022569 G A STK32C Nonsense_Mutation p.Q430* 0.65 TCGA-GN-A8LK-06 10 134511417 134511417 C T INPP5A Silent p.F156F 0.56 TCGA-GN-A8LK-06 10 134598365 134598365 C A NKX6-2 3'UTR 0.42 TCGA-GN-A8LK-06 10 135141409 135141409 C T CALY Silent p.R82R 0.37 TCGA-GN-A8LK-06 10 135141410 135141410 C T CALY Missense_Mutation p.R82K 0.37 tolerated(0.91) benign(0.003) TCGA-GN-A8LK-06 10 135345682 135345682 C T CYP2E1 Missense_Mutation p.A181V 0.51 deleterious(0) possibly_damaging(0.533) TCGA-GN-A8LK-06 10 135373656 135373656 C A SYCE1 Silent p.G25G 0.27 TCGA-GN-A8LK-06 10 135440163 135440163 G A FRG2B Silent p.S28S 0.06 TCGA-GN-A8LK-06 10 13779915 13779915 G A FRMD4A Missense_Mutation p.P230S 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A8LK-06 10 15014691 15014691 C T MEIG1 3'UTR 0.32 TCGA-GN-A8LK-06 10 15701033 15701033 C T ITGA8 Missense_Mutation p.D305N 0.60 tolerated(0.64) benign(0.027) TCGA-GN-A8LK-06 10 17024592 17024592 G A CUBN Missense_Mutation p.P1529L 0.38 deleterious(0.04) possibly_damaging(0.783) TCGA-GN-A8LK-06 10 20436805 20436805 G T PLXDC2 Nonsense_Mutation p.G253* 0.31 TCGA-GN-A8LK-06 10 20436806 20436806 G A PLXDC2 Missense_Mutation p.G253E 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 10 21120459 21120459 C T NEBL Silent p.V501V 0.28 TCGA-GN-A8LK-06 10 24762971 24762971 C T KIAA1217 Missense_Mutation p.P554L 0.30 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 10 25886802 25886802 C T GPR158 Silent p.G749G 0.51 TCGA-GN-A8LK-06 10 26518644 26518644 C T GAD2 Missense_Mutation p.P260S 0.48 deleterious(0.01) probably_damaging(0.909) TCGA-GN-A8LK-06 10 27702286 27702286 G A PTCHD3 Silent p.T298T 0.58 TCGA-GN-A8LK-06 10 27703238 27703238 C T PTCHD3 5'UTR 0.38 TCGA-GN-A8LK-06 10 27703239 27703239 C T PTCHD3 5'UTR 0.38 TCGA-GN-A8LK-06 10 27964063 27964063 G A MKX 3'UTR 0.59 TCGA-GN-A8LK-06 10 29769525 29769525 C T SVIL Missense_Mutation p.G1773E 0.60 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 10 31784758 31784758 G A ZEB1 Missense_Mutation p.G105R 0.52 deleterious(0.03) benign(0.007) TCGA-GN-A8LK-06 10 37430825 37430825 G A ANKRD30A Missense_Mutation p.G278R 0.61 tolerated(0.57) probably_damaging(0.979) TCGA-GN-A8LK-06 10 37506728 37506728 A C ANKRD30A Missense_Mutation p.L1007F 0.34 tolerated(0.07) possibly_damaging(0.86) TCGA-GN-A8LK-06 10 38484548 38484548 G A RP11-508N22.8 RNA 0.41 TCGA-GN-A8LK-06 10 43612126 43612126 T A RET Missense_Mutation p.F744Y 0.37 deleterious(0.02) benign(0.404) TCGA-GN-A8LK-06 10 43612128 43612128 C A RET Missense_Mutation p.H745N 0.37 tolerated(0.36) benign(0.001) TCGA-GN-A8LK-06 10 45798859 45798859 G A OR13A1 3'UTR 0.40 TCGA-GN-A8LK-06 10 46248671 46248671 C T FAM21C Missense_Mutation p.A389V 0.76 tolerated(0.45) benign(0.005) TCGA-GN-A8LK-06 10 468916 468916 G A DIP2C Missense_Mutation p.P151L 0.25 tolerated(0.06) benign(0.007) TCGA-GN-A8LK-06 10 48388271 48388271 C T RBP3 Silent p.G869G 0.61 TCGA-GN-A8LK-06 10 48389649 48389649 C T RBP3 Missense_Mutation p.G410E 0.43 tolerated(1) benign(0.132) TCGA-GN-A8LK-06 10 48414223 48414223 G A GDF2 Silent p.V215V 0.38 TCGA-GN-A8LK-06 10 48428755 48428755 G A GDF10 Silent p.S377S 0.28 TCGA-GN-A8LK-06 10 4889454 4889454 G A AKR1E2 Intron 0.61 TCGA-GN-A8LK-06 10 4889455 4889455 G A AKR1E2 Intron 0.62 TCGA-GN-A8LK-06 10 49400861 49400861 C T FRMPD2 Silent p.Q677Q 0.27 TCGA-GN-A8LK-06 10 49450219 49450219 C A FRMPD2 Silent p.L184L 0.58 TCGA-GN-A8LK-06 10 50118163 50118163 G A LRRC18 3'UTR 0.46 TCGA-GN-A8LK-06 10 50121620 50121620 C T LRRC18 Missense_Mutation p.R194K 0.37 tolerated(0.24) benign(0.046) TCGA-GN-A8LK-06 10 50122117 50122117 C T LRRC18 Silent p.G28G 0.61 TCGA-GN-A8LK-06 10 5041435 5041435 C T AKR1C2 Missense_Mutation p.G135E 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 10 50531154 50531154 C T C10orf71 Silent p.F188F 0.26 TCGA-GN-A8LK-06 10 50824088 50824088 C T CHAT Intron 0.61 TCGA-GN-A8LK-06 10 50833529 50833529 C T CHAT Missense_Mutation p.P255S 0.46 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 10 50916738 50916738 G A C10orf53 3'UTR 0.32 TCGA-GN-A8LK-06 10 51748474 51748474 C T AGAP6 5'UTR 0.35 TCGA-GN-A8LK-06 10 51768934 51768934 C T AGAP6 Missense_Mutation p.S350L 0.31 tolerated(0.26) benign(0.002) TCGA-GN-A8LK-06 10 51769426 51769426 C T AGAP6 Missense_Mutation p.S514F 0.37 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 10 52573769 52573769 G A A1CF Missense_Mutation p.R399C 0.45 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 10 52619673 52619673 C T A1CF 5'UTR 0.42 TCGA-GN-A8LK-06 10 54041941 54041941 G A PRKG1 Missense_Mutation p.G525E 0.31 tolerated(0.13) possibly_damaging(0.662) TCGA-GN-A8LK-06 10 55568492 55568492 G A PCDH15 Missense_Mutation p.S707L 0.32 deleterious_low_confidence(0) unknown(0) TCGA-GN-A8LK-06 10 58119457 58119457 G A ZWINT Silent p.L138L 0.55 TCGA-GN-A8LK-06 10 60560020 60560020 C T BICC1 Missense_Mutation p.H598Y 0.57 tolerated(0.2) benign(0.332) TCGA-GN-A8LK-06 10 60560789 60560789 G A BICC1 Silent p.T666T 0.52 TCGA-GN-A8LK-06 10 61819483 61819483 C T ANK3 Intron 0.58 TCGA-GN-A8LK-06 10 61830168 61830168 G A ANK3 Missense_Mutation p.P3491S 0.35 benign(0) TCGA-GN-A8LK-06 10 61831416 61831416 C T ANK3 Missense_Mutation p.E3075K 0.30 benign(0.007) TCGA-GN-A8LK-06 10 62023706 62023706 C T ANK3 Missense_Mutation p.D196N 0.35 probably_damaging(0.999) TCGA-GN-A8LK-06 10 62544600 62544600 C T CDK1 Missense_Mutation p.R59C 0.48 deleterious(0) possibly_damaging(0.579) TCGA-GN-A8LK-06 10 64136469 64136469 G A ZNF365 Missense_Mutation p.D173N 0.56 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-GN-A8LK-06 10 64430140 64430140 C T ZNF365 3'UTR 0.55 TCGA-GN-A8LK-06 10 6470291 6470291 C T PRKCQ Missense_Mutation p.E667K 0.49 deleterious(0) probably_damaging(0.95) TCGA-GN-A8LK-06 10 64914076 64914076 C T NRBF2 3'UTR 0.54 TCGA-GN-A8LK-06 10 65380649 65380649 C T REEP3 3'UTR 0.54 TCGA-GN-A8LK-06 10 67680226 67680226 C T CTNNA3 Missense_Mutation p.M850I 0.28 deleterious(0) unknown(0) TCGA-GN-A8LK-06 10 69281716 69281716 G A CTNNA3 Nonsense_Mutation p.Q155* 0.60 TCGA-GN-A8LK-06 10 70153867 70153867 A T RUFY2 Nonsense_Mutation p.Y218* 0.46 TCGA-GN-A8LK-06 10 70451652 70451652 T C TET1 3'UTR 0.28 TCGA-GN-A8LK-06 10 70549601 70549601 G A CCAR1 Missense_Mutation p.E1108K 0.51 tolerated_low_confidence(0.47) unknown(0) TCGA-GN-A8LK-06 10 71392780 71392780 C T C10orf35 Missense_Mutation p.L111F 0.65 deleterious(0.01) benign(0.017) TCGA-GN-A8LK-06 10 72636395 72636395 C T SGPL1 Missense_Mutation p.P515S 0.29 deleterious(0.02) possibly_damaging(0.611) TCGA-GN-A8LK-06 10 73269919 73269919 C T CDH23-AS1 Intron 0.40 TCGA-GN-A8LK-06 10 73326571 73326571 C T CDH23 Missense_Mutation p.L168F 0.48 tolerated(0.12) benign(0.365) TCGA-GN-A8LK-06 10 73326600 73326600 C T CDH23 Silent p.F177F 0.47 TCGA-GN-A8LK-06 10 73439160 73439160 C T CDH23 Missense_Mutation p.S182F 0.29 deleterious(0) possibly_damaging(0.807) TCGA-GN-A8LK-06 10 73827481 73827481 G A SPOCK2 Missense_Mutation p.T200I 0.24 deleterious(0) probably_damaging(0.961) TCGA-GN-A8LK-06 10 74684072 74684072 G A OIT3 Missense_Mutation p.R346Q 0.50 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LK-06 10 75002957 75002957 C A DNAJC9 3'UTR 0.62 TCGA-GN-A8LK-06 10 75520060 75520060 C T SEC24C Missense_Mutation p.P256S 0.53 deleterious(0.01) benign(0.011) TCGA-GN-A8LK-06 10 7745460 7745460 C T ITIH2 Silent p.I21I 0.37 TCGA-GN-A8LK-06 10 78708929 78708929 G A KCNMA1 Missense_Mutation p.H877Y 0.35 tolerated(0.4) possibly_damaging(0.452) TCGA-GN-A8LK-06 10 79580884 79580884 G A DLG5 Missense_Mutation p.R1120W 0.59 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 10 81317308 81317308 C T SFTPA2 Missense_Mutation p.G135E 0.30 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 10 81373526 81373526 G A SFTPA1 Missense_Mutation p.G150E 0.23 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 10 81904039 81904039 G A PLAC9 Missense_Mutation p.E75K 0.54 tolerated(0.06) benign(0.015) TCGA-GN-A8LK-06 10 85992395 85992395 G A LRIT1 Missense_Mutation p.P387L 0.58 tolerated(0.05) benign(0.009) TCGA-GN-A8LK-06 10 86014153 86014153 C T RGR Missense_Mutation p.S199F 0.59 deleterious(0.01) probably_damaging(0.976) TCGA-GN-A8LK-06 10 87362104 87362104 G A GRID1 Missense_Mutation p.P986S 0.31 tolerated_low_confidence(0.48) possibly_damaging(0.754) TCGA-GN-A8LK-06 10 91483825 91483825 T C KIF20B Silent p.F609F 0.41 TCGA-GN-A8LK-06 10 91498169 91498169 G A KIF20B Missense_Mutation p.E1151K 0.35 deleterious(0) possibly_damaging(0.759) TCGA-GN-A8LK-06 10 94654684 94654684 A T EXOC6 Intron 0.51 TCGA-GN-A8LK-06 10 95718529 95718529 C T PIPSL RNA 0.50 TCGA-GN-A8LK-06 10 95791224 95791224 C T PLCE1 Missense_Mutation p.P141S 0.33 tolerated_low_confidence(0.49) benign(0.009) TCGA-GN-A8LK-06 10 96006321 96006321 G A PLCE1 Silent p.R1013R 0.57 TCGA-GN-A8LK-06 10 96443664 96443664 C T CYP2C18 Missense_Mutation p.P30S 0.57 deleterious(0) probably_damaging(0.986) TCGA-GN-A8LK-06 10 96454689 96454689 C T CYP2C18 Missense_Mutation p.P166L 0.54 deleterious(0.01) possibly_damaging(0.836) TCGA-GN-A8LK-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.56 tolerated(0.19) benign(0.064) TCGA-GN-A8LK-06 10 96707585 96707585 G A CYP2C9 Silent p.V177V 0.45 TCGA-GN-A8LK-06 10 96824569 96824569 G A CYP2C8 Silent p.S210S 0.39 TCGA-GN-A8LK-06 10 98155697 98155697 C T TLL2 Missense_Mutation p.E489K 0.56 tolerated(0.06) benign(0.356) TCGA-GN-A8LK-06 10 98336392 98336392 T G TM9SF3 Missense_Mutation p.K99N 0.50 tolerated(0.05) benign(0.314) TCGA-GN-A8LK-06 10 98469387 98469387 C T PIK3AP1 Missense_Mutation p.E123K 0.60 tolerated(1) benign(0.136) TCGA-GN-A8LK-06 10 98744001 98744001 C T C10orf12 Nonsense_Mutation p.R952* 0.38 TCGA-GN-A8LK-06 10 98764450 98764450 C T SLIT1 Missense_Mutation p.S1237N 0.20 deleterious(0) probably_damaging(0.974) TCGA-GN-A8LK-06 11 100064281 100064281 C A CNTN5 Silent p.V590V 0.83 TCGA-GN-A8LK-06 11 100211289 100211289 G A CNTN5 Missense_Mutation p.G942E 1.00 deleterious(0.02) probably_damaging(0.959) TCGA-GN-A8LK-06 11 1006563 1006563 A T AP2A2 Missense_Mutation p.T748S 0.24 tolerated(0.57) benign(0.002) TCGA-GN-A8LK-06 11 102575416 102575416 C T MMP27 Missense_Mutation p.E65K 0.91 tolerated(0.08) benign(0.028) TCGA-GN-A8LK-06 11 103270562 103270562 G A DYNC2H1 Missense_Mutation p.E4117K 1.00 benign(0.096) TCGA-GN-A8LK-06 11 103908025 103908025 C T DDI1 Silent p.L159L 0.97 TCGA-GN-A8LK-06 11 10673789 10673789 C T MRVI1 Intron 0.63 TCGA-GN-A8LK-06 11 10778311 10778311 C T CTR9 Missense_Mutation p.S173F 0.48 tolerated(0.12) benign(0.006) TCGA-GN-A8LK-06 11 107920788 107920788 C T CUL5 Nonsense_Mutation p.R136* 0.95 TCGA-GN-A8LK-06 11 10793091 10793091 G A CTR9 Splice_Site p.X791_splice 0.46 TCGA-GN-A8LK-06 11 108384622 108384622 C T EXPH5 Missense_Mutation p.G538R 0.97 tolerated(0.99) benign(0.008) TCGA-GN-A8LK-06 11 1094676 1094676 C T MUC2 Missense_Mutation p.R1922C 0.37 unknown(0) TCGA-GN-A8LK-06 11 1101919 1101919 G A MUC2 Silent p.K2561K 0.55 TCGA-GN-A8LK-06 11 1103580 1103580 G A MUC2 Missense_Mutation p.G2698E 0.47 unknown(0) TCGA-GN-A8LK-06 11 113650886 113650886 G A CLDN25 Silent p.R123R 0.96 TCGA-GN-A8LK-06 11 113860567 113860567 A C HTR3A 3'UTR 1.00 TCGA-GN-A8LK-06 11 114271083 114271083 A T C11orf71 5'UTR 1.00 TCGA-GN-A8LK-06 11 114271084 114271084 C T C11orf71 5'UTR 1.00 TCGA-GN-A8LK-06 11 115099910 115099910 C T CADM1 Missense_Mutation p.G215E 0.93 tolerated(0.13) probably_damaging(0.985) TCGA-GN-A8LK-06 11 115099911 115099911 C T CADM1 Missense_Mutation p.G215R 0.92 deleterious(0) probably_damaging(0.978) TCGA-GN-A8LK-06 11 1156249 1156249 G A MUC5AC Missense_Mutation p.D192N 0.17 deleterious(0.03) benign(0.358) TCGA-GN-A8LK-06 11 1162077 1162077 C T MUC5AC Silent p.F556F 0.67 TCGA-GN-A8LK-06 11 116653674 116653674 G A ZNF259 Silent p.F351F 0.91 TCGA-GN-A8LK-06 11 118850223 118850223 G A FOXR1 Silent p.R152R 1.00 TCGA-GN-A8LK-06 11 119148958 119148960 TTG - CBL In_Frame_Del p.I393_E394delinsK 0.88 TCGA-GN-A8LK-06 11 11954640 11954640 G T USP47 Nonsense_Mutation p.E513* 0.37 TCGA-GN-A8LK-06 11 1213354 1213354 G A MUC5AC RNA 0.11 TCGA-GN-A8LK-06 11 123814054 123814054 G A OR6T1 Silent p.A164A 0.91 TCGA-GN-A8LK-06 11 123893994 123893994 C T OR10G9 Missense_Mutation p.S92F 0.59 deleterious(0) benign(0.12) TCGA-GN-A8LK-06 11 124179910 124179910 G A OR8D1 Silent p.F251F 0.89 TCGA-GN-A8LK-06 11 124252536 124252536 G A OR8B2 Missense_Mutation p.S235L 0.81 deleterious_low_confidence(0.02) benign(0.009) TCGA-GN-A8LK-06 11 124412758 124412758 G A OR8B12 Silent p.L265L 0.82 TCGA-GN-A8LK-06 11 124440464 124440464 C T OR8A1 Missense_Mutation p.A167V 0.92 tolerated(0.61) benign(0.02) TCGA-GN-A8LK-06 11 125616202 125616202 G A PATE1 Translation_Start_Site p.M1? 0.95 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LK-06 11 1266084 1266084 C T MUC5B Silent p.T2658T 0.62 TCGA-GN-A8LK-06 11 1268420 1268420 C T MUC5B Missense_Mutation p.S3437F 0.20 unknown(0) TCGA-GN-A8LK-06 11 13378592 13378592 C T ARNTL Intron 0.33 TCGA-GN-A8LK-06 11 134158754 134158754 G A GLB1L3 Silent p.K233K 0.37 TCGA-GN-A8LK-06 11 1651370 1651370 C T KRTAP5-5 Silent p.V100V 0.66 TCGA-GN-A8LK-06 11 17190404 17190404 A T PIK3C2A Silent p.V295V 0.46 TCGA-GN-A8LK-06 11 18048108 18048108 A G TPH1 Silent p.G244G 0.45 TCGA-GN-A8LK-06 11 18373444 18373444 C T GTF2H1 Missense_Mutation p.S357F 0.44 tolerated(0.06) benign(0.005) TCGA-GN-A8LK-06 11 18637361 18637361 T C SPTY2D1 Missense_Mutation p.S154G 0.48 tolerated(0.37) benign(0.153) TCGA-GN-A8LK-06 11 18738354 18738354 C T IGSF22 Silent p.K389K 0.49 TCGA-GN-A8LK-06 11 19207816 19207816 G A CSRP3 Missense_Mutation p.P121S 0.45 tolerated(0.18) possibly_damaging(0.512) TCGA-GN-A8LK-06 11 19207817 19207817 G A CSRP3 Silent p.C120C 0.45 TCGA-GN-A8LK-06 11 1946331 1946331 G A TNNT3 Missense_Mutation p.E18K 0.62 tolerated(0.09) unknown(0) TCGA-GN-A8LK-06 11 20385892 20385892 G A HTATIP2 Missense_Mutation p.E71K 0.41 deleterious(0.02) possibly_damaging(0.824) TCGA-GN-A8LK-06 11 20622866 20622866 G A SLC6A5 Silent p.A65A 0.55 TCGA-GN-A8LK-06 11 28112980 28112980 G A KIF18A Silent p.V188V 0.55 TCGA-GN-A8LK-06 11 31327918 31327918 G A DCDC1 Missense_Mutation p.S151F 0.46 deleterious(0) probably_damaging(0.983) TCGA-GN-A8LK-06 11 32674702 32674702 C T CCDC73 Silent p.E302E 0.41 TCGA-GN-A8LK-06 11 40136298 40136298 C T LRRC4C Silent p.G515G 0.48 TCGA-GN-A8LK-06 11 40137215 40137215 G A LRRC4C Missense_Mutation p.R210W 0.43 deleterious(0) probably_damaging(0.963) TCGA-GN-A8LK-06 11 428549 428549 C T ANO9 Missense_Mutation p.E371K 0.42 tolerated(0.5) benign(0.093) TCGA-GN-A8LK-06 11 4471424 4471424 C T OR52K2 Silent p.F285F 0.39 TCGA-GN-A8LK-06 11 4510219 4510219 C T OR52K1 Missense_Mutation p.S30F 0.53 deleterious(0.01) probably_damaging(0.933) TCGA-GN-A8LK-06 11 4510220 4510220 C T OR52K1 Silent p.S30S 0.54 TCGA-GN-A8LK-06 11 4510627 4510627 G A OR52K1 Missense_Mutation p.R166K 0.34 tolerated(0.37) benign(0.007) TCGA-GN-A8LK-06 11 45117336 45117336 C T PRDM11 5'UTR 0.52 TCGA-GN-A8LK-06 11 45931699 45931699 G A PEX16 Missense_Mutation p.P328S 0.45 tolerated_low_confidence(0.21) probably_damaging(0.932) TCGA-GN-A8LK-06 11 46701271 46701271 G A ARHGAP1 Silent p.L318L 0.45 TCGA-GN-A8LK-06 11 46791515 46791515 G A CKAP5 Missense_Mutation p.S1107L 0.41 tolerated(0.13) benign(0.001) TCGA-GN-A8LK-06 11 47861586 47861586 A G NUP160 Missense_Mutation p.I186T 0.55 deleterious(0) possibly_damaging(0.788) TCGA-GN-A8LK-06 11 48134463 48134463 G A PTPRJ Missense_Mutation p.D94N 0.56 tolerated(0.74) benign(0.001) TCGA-GN-A8LK-06 11 48164470 48164488 GATCCCCCTCCTCCAGATG - PTPRJ Splice_Site p.X817_splice 0.31 TCGA-GN-A8LK-06 11 4825453 4825453 C T OR52R1 Missense_Mutation p.R53K 0.50 tolerated(1) benign(0.019) TCGA-GN-A8LK-06 11 48328536 48328536 C T OR4S1 Silent p.F254F 0.50 TCGA-GN-A8LK-06 11 48511133 48511133 C T OR4A47 Silent p.F263F 0.39 TCGA-GN-A8LK-06 11 4903753 4903753 G A OR51T1 Silent p.L235L 0.48 TCGA-GN-A8LK-06 11 4945270 4945270 G A OR51G1 Silent p.F100F 0.27 TCGA-GN-A8LK-06 11 49598272 49598272 C T RP11-707M1.1 RNA 0.33 TCGA-GN-A8LK-06 11 4967560 4967560 G A OR51A4 Silent p.I257I 0.38 TCGA-GN-A8LK-06 11 5013494 5013494 C T MMP26 3'UTR 0.39 TCGA-GN-A8LK-06 11 5020857 5020857 C T OR51L1 Silent p.F215F 0.47 TCGA-GN-A8LK-06 11 5153503 5153503 G A OR52A5 Missense_Mutation p.R124C 0.51 deleterious(0.02) benign(0.165) TCGA-GN-A8LK-06 11 5275576 5275576 G A HBG2 Silent p.A87A 0.25 TCGA-GN-A8LK-06 11 5275596 5275596 C T HBG2 Missense_Mutation p.D81N 0.31 tolerated(1) benign(0.006) TCGA-GN-A8LK-06 11 5410672 5410672 C T OR51M1 Missense_Mutation p.S15F 0.41 tolerated(0.28) benign(0.162) TCGA-GN-A8LK-06 11 5410753 5410753 C T OR51M1 Missense_Mutation p.P42L 0.29 tolerated(0.09) benign(0.02) TCGA-GN-A8LK-06 11 55038171 55038171 G A TRIM48 3'UTR 0.34 TCGA-GN-A8LK-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.96 deleterious_low_confidence(0) benign(0.072) TCGA-GN-A8LK-06 11 55136282 55136282 C T OR4A15 Missense_Mutation p.P308L 0.45 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-GN-A8LK-06 11 55136310 55136310 G A OR4A15 Silent p.L317L 0.51 TCGA-GN-A8LK-06 11 55433251 55433251 G A OR4C6 Missense_Mutation p.M203I 0.52 tolerated_low_confidence(0.14) benign(0.003) TCGA-GN-A8LK-06 11 55541762 55541762 G A OR5D13 Silent p.A283A 0.36 TCGA-GN-A8LK-06 11 55681212 55681212 G A OR5W2 Missense_Mutation p.P283S 0.45 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 11 55798741 55798741 C T OR5AS1 Missense_Mutation p.P283S 0.46 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 11 558838 558838 C T C11orf35 Intron 0.38 TCGA-GN-A8LK-06 11 55927066 55927066 G A OR8K5 Missense_Mutation p.S243F 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A8LK-06 11 56000181 56000181 G A OR5T2 Missense_Mutation p.R161C 0.52 deleterious(0.02) benign(0.081) TCGA-GN-A8LK-06 11 56020050 56020050 C T OR5T3 Silent p.I125I 0.97 TCGA-GN-A8LK-06 11 56185643 56185643 C G OR5R1 Missense_Mutation p.E22D 0.41 tolerated(0.09) possibly_damaging(0.546) TCGA-GN-A8LK-06 11 56756998 56756998 G A OR5AK2 Missense_Mutation p.G204R 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A8LK-06 11 5718563 5718563 C T TRIM22 Missense_Mutation p.T170I 0.38 tolerated(0.15) benign(0.002) TCGA-GN-A8LK-06 11 57971240 57971240 C T OR1S2 Silent p.A138A 0.51 TCGA-GN-A8LK-06 11 58034353 58034353 C T OR10W1 3'UTR 0.30 TCGA-GN-A8LK-06 11 58169993 58169993 C G OR5B3 Missense_Mutation p.S297T 0.44 tolerated_low_confidence(0.07) benign(0.009) TCGA-GN-A8LK-06 11 58190282 58190282 G A OR5B2 Silent p.F151F 0.46 TCGA-GN-A8LK-06 11 58207554 58207554 G A OR5B12 Missense_Mutation p.P24L 0.49 tolerated_low_confidence(0.06) benign(0.142) TCGA-GN-A8LK-06 11 58723462 58723462 C T GLYATL1 Nonsense_Mutation p.Q322* 0.48 TCGA-GN-A8LK-06 11 58723578 58723578 T C GLYATL1 3'UTR 0.54 TCGA-GN-A8LK-06 11 58972371 58972371 G A DTX4 Missense_Mutation p.E617K 0.55 deleterious(0.01) benign(0.009) TCGA-GN-A8LK-06 11 5905567 5905567 C T OR52E4 Silent p.L15L 0.50 TCGA-GN-A8LK-06 11 59282938 59282938 C T OR4D9 Missense_Mutation p.L185F 0.46 deleterious(0) benign(0.25) TCGA-GN-A8LK-06 11 60198309 60198309 G A MS4A5 Missense_Mutation p.G65E 0.55 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 11 6048517 6048517 G A OR56A1 Missense_Mutation p.P140S 0.52 tolerated(0.28) benign(0.007) TCGA-GN-A8LK-06 11 6048642 6048642 G A OR56A1 Missense_Mutation p.S98L 0.48 tolerated(0.1) benign(0.001) TCGA-GN-A8LK-06 11 60563120 60563120 G A MS4A10 Silent p.G195G 0.45 TCGA-GN-A8LK-06 11 60696318 60696318 C T TMEM132A Missense_Mutation p.P251L 0.37 tolerated(0.12) benign(0.108) TCGA-GN-A8LK-06 11 62339371 62339371 G A EEF1G Silent p.V58V 0.38 TCGA-GN-A8LK-06 11 62558336 62558336 G T TMEM223 Nonsense_Mutation p.S123* 0.56 TCGA-GN-A8LK-06 11 6262818 6262818 G A CNGA4 Missense_Mutation p.E359K 0.47 deleterious(0) benign(0.421) TCGA-GN-A8LK-06 11 63176295 63176295 C T SLC22A9 Silent p.L515L 0.34 TCGA-GN-A8LK-06 11 63766461 63766461 G A MACROD1 Silent p.I313I 0.73 TCGA-GN-A8LK-06 11 64329596 64329596 G A SLC22A11 Silent p.G206G 0.48 TCGA-GN-A8LK-06 11 6453013 6453013 G A HPX Silent p.F329F 0.43 TCGA-GN-A8LK-06 11 64606565 64606565 C T CDC42BPG Silent p.G272G 0.45 TCGA-GN-A8LK-06 11 65304486 65304486 C T SCYL1 Missense_Mutation p.P616S 0.43 tolerated(0.78) benign(0) TCGA-GN-A8LK-06 11 65482341 65482341 G A KAT5 Missense_Mutation p.G330D 0.47 tolerated(0.7) benign(0.014) TCGA-GN-A8LK-06 11 65486654 65486654 C T KAT5 3'UTR 0.44 TCGA-GN-A8LK-06 11 65622737 65622737 G A CFL1 3'UTR 0.57 TCGA-GN-A8LK-06 11 65623473 65623473 A G CFL1 Missense_Mutation p.Y82H 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 11 65766099 65766099 C T EIF1AD Missense_Mutation p.E157K 0.41 deleterious(0.05) unknown(0) TCGA-GN-A8LK-06 11 6589771 6589771 T G DNHD1 Missense_Mutation p.L4209R 0.46 probably_damaging(0.992) TCGA-GN-A8LK-06 11 65984000 65984000 C T PACS1 Missense_Mutation p.P272L 0.49 deleterious(0.04) probably_damaging(0.98) TCGA-GN-A8LK-06 11 66384348 66384348 G A RBM14-RBM4 Missense_Mutation p.E53K 0.45 tolerated(0.2) possibly_damaging(0.608) TCGA-GN-A8LK-06 11 66411273 66411273 C T RBM14-RBM4 Silent p.V230V 0.41 TCGA-GN-A8LK-06 11 66985218 66985218 C T KDM2A Missense_Mutation p.P235L 0.54 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 11 66985219 66985219 C T KDM2A Silent p.P235P 0.53 TCGA-GN-A8LK-06 11 67287363 67287363 C T CABP2 Missense_Mutation p.A180T 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A8LK-06 11 67376978 67376978 C T NDUFV1 Missense_Mutation p.R128W 0.54 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GN-A8LK-06 11 68548173 68548173 C T CPT1A Missense_Mutation p.G465R 0.51 deleterious(0) possibly_damaging(0.896) TCGA-GN-A8LK-06 11 6867141 6867141 A G OR10A5 Silent p.L76L 0.45 TCGA-GN-A8LK-06 11 69465984 69466004 GGAAGAGGAGGAGGAGGAGGT - CCND1 In_Frame_Del p.E275_V281del 0.50 TCGA-GN-A8LK-06 11 69588041 69588041 G A FGF4 3'UTR 0.57 TCGA-GN-A8LK-06 11 71276920 71276920 C T KRTAP5-10 Missense_Mutation p.S96F 0.43 unknown(0) TCGA-GN-A8LK-06 11 72145607 72145607 G A CLPB 5'UTR 0.46 TCGA-GN-A8LK-06 11 73677192 73677192 G A DNAJB13 Missense_Mutation p.E168K 0.48 tolerated(0.32) benign(0.008) TCGA-GN-A8LK-06 11 75277710 75277710 G A SERPINH1 Missense_Mutation p.E106K 0.55 tolerated(0.89) benign(0.053) TCGA-GN-A8LK-06 11 763394 763394 C T TALDO1 Missense_Mutation p.S171F 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 11 77378401 77378401 G A RSF1 Missense_Mutation p.S1296F 0.54 tolerated(0.05) possibly_damaging(0.732) TCGA-GN-A8LK-06 11 77924714 77924714 G A USP35 Missense_Mutation p.S971N 0.42 tolerated(0.37) benign(0.125) TCGA-GN-A8LK-06 11 7818469 7818469 C T OR5P2 Silent p.G7G 0.61 TCGA-GN-A8LK-06 11 78433860 78433860 G A TENM4 Missense_Mutation p.P1218L 0.53 deleterious(0.01) possibly_damaging(0.878) TCGA-GN-A8LK-06 11 78449572 78449572 T C TENM4 Missense_Mutation p.T934A 0.58 deleterious(0.02) benign(0.065) TCGA-GN-A8LK-06 11 7960919 7960919 G A OR10A3 Missense_Mutation p.S50F 0.37 tolerated(0.73) benign(0.003) TCGA-GN-A8LK-06 11 8060469 8060469 G A TUB Missense_Mutation p.E17K 0.53 tolerated_low_confidence(1) benign(0) TCGA-GN-A8LK-06 11 8159826 8159826 C T RIC3 Silent p.R140R 0.51 TCGA-GN-A8LK-06 11 8159977 8159977 G A RIC3 Intron 0.38 TCGA-GN-A8LK-06 11 8486300 8486300 C T STK33 Missense_Mutation p.E137K 0.49 tolerated(0.07) benign(0.14) TCGA-GN-A8LK-06 11 8496557 8496557 C T STK33 5'UTR 0.46 TCGA-GN-A8LK-06 11 85346839 85346839 C T TMEM126B Intron 0.60 TCGA-GN-A8LK-06 11 85397177 85397177 C T CCDC89 5'UTR 0.39 TCGA-GN-A8LK-06 11 85593574 85593574 G T CCDC83 Nonsense_Mutation p.E67* 0.46 TCGA-GN-A8LK-06 11 85610037 85610037 G A CCDC83 Silent p.E217E 0.40 TCGA-GN-A8LK-06 11 86055835 86055835 T C C11orf73 Intron 0.49 TCGA-GN-A8LK-06 11 88338100 88338100 C T GRM5 Missense_Mutation p.D394N 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 11 89537540 89537540 C T TRIM49 Missense_Mutation p.S33N 0.55 tolerated(0.12) benign(0.079) TCGA-GN-A8LK-06 11 89771112 89771112 G A TRIM49C Missense_Mutation p.E235K 0.38 tolerated(0.49) benign(0.014) TCGA-GN-A8LK-06 11 89916124 89916124 C T NAALAD2 Silent p.L661L 0.42 TCGA-GN-A8LK-06 11 94040800 94040800 C T FOLR4 Missense_Mutation p.S225F 0.42 deleterious(0) possibly_damaging(0.682) TCGA-GN-A8LK-06 11 94800550 94800550 C T SRSF8 Missense_Mutation p.P54S 0.54 tolerated_low_confidence(0.98) benign(0.033) TCGA-GN-A8LK-06 11 94800551 94800551 C T SRSF8 Missense_Mutation p.P54L 0.58 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-GN-A8LK-06 12 100774644 100774644 C T SLC17A8 Silent p.S89S 0.41 TCGA-GN-A8LK-06 12 101684611 101684611 C T UTP20 Missense_Mutation p.S279F 0.35 deleterious(0) possibly_damaging(0.899) TCGA-GN-A8LK-06 12 101876659 101876659 C T SPIC Silent p.L100L 0.39 TCGA-GN-A8LK-06 12 10217364 10217364 G A CLEC9A Missense_Mutation p.G169R 0.37 tolerated(0.62) benign(0.003) TCGA-GN-A8LK-06 12 103700076 103700076 G A C12orf42 Missense_Mutation p.H103Y 0.54 tolerated(0.71) benign(0.016) TCGA-GN-A8LK-06 12 104397019 104397019 C T GLT8D2 Missense_Mutation p.G60R 0.58 tolerated(0.14) possibly_damaging(0.782) TCGA-GN-A8LK-06 12 10532386 10532386 G A KLRK1 Missense_Mutation p.P52S 0.53 tolerated(0.06) possibly_damaging(0.545) TCGA-GN-A8LK-06 12 10600186 10600186 G A KLRC1 Missense_Mutation p.R179C 0.43 deleterious(0) possibly_damaging(0.887) TCGA-GN-A8LK-06 12 106632697 106632697 G A CKAP4 3'UTR 0.51 TCGA-GN-A8LK-06 12 106786915 106786915 T A POLR3B Missense_Mutation p.I277N 0.56 deleterious(0) possibly_damaging(0.9) TCGA-GN-A8LK-06 12 106804621 106804621 C T POLR3B Silent p.F328F 0.40 TCGA-GN-A8LK-06 12 106824229 106824229 C T POLR3B Missense_Mutation p.P481L 0.51 deleterious(0.01) possibly_damaging(0.833) TCGA-GN-A8LK-06 12 10772633 10772633 C T STYK1 3'UTR 0.57 TCGA-GN-A8LK-06 12 108006606 108006606 T C BTBD11 Missense_Mutation p.V620A 0.52 deleterious(0.03) probably_damaging(0.997) TCGA-GN-A8LK-06 12 108589595 108589595 C T WSCD2 5'UTR 0.65 TCGA-GN-A8LK-06 12 109998890 109998890 G A MMAB Missense_Mutation p.S180L 0.54 deleterious(0) possibly_damaging(0.663) TCGA-GN-A8LK-06 12 111760383 111760383 G A CUX2 Silent p.Q975Q 0.72 TCGA-GN-A8LK-06 12 112187059 112187059 C T ACAD10 Silent p.I940I 0.34 TCGA-GN-A8LK-06 12 112630444 112630444 T A HECTD4 Missense_Mutation p.N2925I 0.53 possibly_damaging(0.782) TCGA-GN-A8LK-06 12 113538457 113538457 C T RASAL1 Missense_Mutation p.D753N 0.47 tolerated(0.31) benign(0.005) TCGA-GN-A8LK-06 12 114803923 114803923 G A TBX5 Intron 0.48 TCGA-GN-A8LK-06 12 117175640 117175640 G C C12orf49 Silent p.V22V 0.27 TCGA-GN-A8LK-06 12 120594724 120594724 G A GCN1L1 Missense_Mutation p.R1054C 0.48 possibly_damaging(0.487) TCGA-GN-A8LK-06 12 120762825 120762825 C T PLA2G1B Silent p.K78K 0.32 TCGA-GN-A8LK-06 12 120800919 120800919 T A MSI1 Missense_Mutation p.K110M 0.53 deleterious(0) probably_damaging(0.993) TCGA-GN-A8LK-06 12 121018928 121018928 G A POP5 Silent p.I51I 0.58 TCGA-GN-A8LK-06 12 122212571 122212571 C T TMEM120B Silent p.F260F 0.58 TCGA-GN-A8LK-06 12 122670817 122670817 G A LRRC43 Silent p.V164V 0.50 TCGA-GN-A8LK-06 12 124118227 124118227 C T EIF2B1 5'UTR 0.57 TCGA-GN-A8LK-06 12 124236908 124236908 C T ATP6V0A2 Missense_Mutation p.H712Y 0.35 tolerated(0.13) benign(0) TCGA-GN-A8LK-06 12 124330178 124330178 G A DNAH10 Missense_Mutation p.V1680M 0.56 benign(0.209) TCGA-GN-A8LK-06 12 124330412 124330412 G A DNAH10 Missense_Mutation p.G1758S 0.56 benign(0.002) TCGA-GN-A8LK-06 12 124359829 124359829 G A DNAH10 Missense_Mutation p.E2546K 0.30 possibly_damaging(0.861) TCGA-GN-A8LK-06 12 124399513 124399513 G A DNAH10 Nonsense_Mutation p.W3445* 0.59 TCGA-GN-A8LK-06 12 12483627 12483627 G A MANSC1 Silent p.S210S 0.40 TCGA-GN-A8LK-06 12 124856793 124856793 G A NCOR2 Missense_Mutation p.P861L 0.52 possibly_damaging(0.547) TCGA-GN-A8LK-06 12 126139337 126139337 G A TMEM132B 3'UTR 0.69 TCGA-GN-A8LK-06 12 129558946 129558946 C T TMEM132D Missense_Mutation p.G925E 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A8LK-06 12 129822251 129822251 G A TMEM132D Silent p.I409I 0.60 TCGA-GN-A8LK-06 12 133306532 133306532 A C ANKLE2 Missense_Mutation p.L739R 0.59 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LK-06 12 13906437 13906437 G A GRIN2B Missense_Mutation p.T275I 0.49 tolerated(0.25) benign(0.051) TCGA-GN-A8LK-06 12 13906652 13906652 G A GRIN2B Silent p.L203L 0.43 TCGA-GN-A8LK-06 12 14018789 14018789 C T GRIN2B Silent p.Q118Q 0.44 TCGA-GN-A8LK-06 12 14613601 14613601 T C ATF7IP Silent p.S777S 0.48 TCGA-GN-A8LK-06 12 14927697 14927698 - G H2AFJ Frame_Shift_Ins p.K100Qfs*81 0.34 TCGA-GN-A8LK-06 12 15654697 15654697 G A PTPRO Missense_Mutation p.E269K 0.56 tolerated_low_confidence(0.22) benign(0.007) TCGA-GN-A8LK-06 12 15661626 15661626 C T PTPRO Silent p.T463T 0.55 TCGA-GN-A8LK-06 12 16111229 16111229 C T DERA Silent p.I79I 0.25 TCGA-GN-A8LK-06 12 18524130 18524130 G A PIK3C2G Missense_Mutation p.E548K 0.46 deleterious(0.04) benign(0.213) TCGA-GN-A8LK-06 12 18699256 18699256 G A PIK3C2G Splice_Site p.X1120_splice 0.19 TCGA-GN-A8LK-06 12 18800940 18800940 C T PIK3C2G Missense_Mutation p.P1439L 0.49 deleterious(0.04) benign(0.242) TCGA-GN-A8LK-06 12 18854659 18854659 C T PLCZ1 Missense_Mutation p.E306K 0.44 tolerated(0.09) benign(0.115) TCGA-GN-A8LK-06 12 1895194 1895194 C T ADIPOR2 Missense_Mutation p.R373C 0.48 deleterious(0.04) possibly_damaging(0.77) TCGA-GN-A8LK-06 12 21033872 21033872 C T SLCO1B3 Missense_Mutation p.P472L 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 12 22025659 22025659 A G ABCC9 Silent p.L700L 0.48 TCGA-GN-A8LK-06 12 22440129 22440129 A G ST8SIA1 Missense_Mutation p.L112S 0.48 tolerated(0.53) possibly_damaging(0.744) TCGA-GN-A8LK-06 12 25302694 25302694 C T CASC1 Silent p.L151L 0.43 TCGA-GN-A8LK-06 12 2659147 2659147 G A CACNA1C Missense_Mutation p.E477K 0.60 deleterious(0.03) benign(0.004) TCGA-GN-A8LK-06 12 2787027 2787027 C T CACNA1C Silent p.I1743I 0.45 TCGA-GN-A8LK-06 12 28116437 28116437 C T PTHLH Missense_Mutation p.G123E 0.45 tolerated(0.09) probably_damaging(0.983) TCGA-GN-A8LK-06 12 306045 306045 G A SLC6A12 Missense_Mutation p.P360L 0.41 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 12 32136763 32136763 A C KIAA1551 Missense_Mutation p.K958N 0.57 tolerated(0.91) benign(0.001) TCGA-GN-A8LK-06 12 32893454 32893454 T C DNM1L Splice_Site p.X665_splice 0.50 TCGA-GN-A8LK-06 12 33529789 33529789 A T SYT10 Silent p.S516S 0.38 TCGA-GN-A8LK-06 12 33538226 33538226 C T SYT10 Missense_Mutation p.E360K 0.51 deleterious(0.01) possibly_damaging(0.612) TCGA-GN-A8LK-06 12 41966269 41966269 G A PDZRN4 Missense_Mutation p.R563Q 0.44 deleterious(0.01) possibly_damaging(0.836) TCGA-GN-A8LK-06 12 43822075 43822075 C T ADAMTS20 Missense_Mutation p.G1305E 0.86 tolerated(0.06) benign(0.22) TCGA-GN-A8LK-06 12 47162155 47162155 G A SLC38A4 Missense_Mutation p.P494S 0.89 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 12 4721830 4721830 C T DYRK4 Missense_Mutation p.P423S 0.37 tolerated(0.37) benign(0.004) TCGA-GN-A8LK-06 12 47628979 47628979 C T PCED1B Missense_Mutation p.P45S 0.96 tolerated(0.83) benign(0.265) TCGA-GN-A8LK-06 12 48501169 48501169 G A PFKM Missense_Mutation p.E5K 0.93 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-GN-A8LK-06 12 4919930 4919930 G A KCNA6 Silent p.G241G 0.47 TCGA-GN-A8LK-06 12 49224373 49224373 T G DDX23 Missense_Mutation p.Q781P 0.86 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 12 49420584 49420584 G A KMT2D Silent p.D5055D 0.97 TCGA-GN-A8LK-06 12 50475361 50475361 G A ASIC1 Missense_Mutation p.G552R 0.94 deleterious(0) possibly_damaging(0.866) TCGA-GN-A8LK-06 12 50488219 50488219 G A SMARCD1 Splice_Site p.X378_splice 0.93 TCGA-GN-A8LK-06 12 51323817 51323817 G A METTL7A Missense_Mutation p.E207K 0.93 deleterious(0.01) benign(0.129) TCGA-GN-A8LK-06 12 51450015 51450015 A G LETMD1 Missense_Mutation p.Q263R 0.89 tolerated(0.53) benign(0.002) TCGA-GN-A8LK-06 12 51773478 51773478 C T GALNT6 Missense_Mutation p.D30N 0.92 deleterious_low_confidence(0) benign(0.037) TCGA-GN-A8LK-06 12 53073771 53073771 C T KRT1 Missense_Mutation p.G121D 1.00 deleterious(0.02) unknown(0) TCGA-GN-A8LK-06 12 53594100 53594100 C T ITGB7 Missense_Mutation p.G43E 0.95 deleterious(0.03) benign(0.016) TCGA-GN-A8LK-06 12 53776703 53776703 C G SP1 Silent p.A324A 0.93 TCGA-GN-A8LK-06 12 54686810 54686810 G A NFE2 Missense_Mutation p.S157F 0.94 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A8LK-06 12 54964056 54964056 C T PDE1B Missense_Mutation p.S170F 0.98 deleterious(0.02) benign(0.058) TCGA-GN-A8LK-06 12 55615577 55615577 C T OR10A7 Silent p.L257L 0.93 TCGA-GN-A8LK-06 12 55714510 55714510 C T OR6C1 Missense_Mutation p.L43F 0.95 deleterious_low_confidence(0.01) benign(0.066) TCGA-GN-A8LK-06 12 56398790 56398790 C T SUOX Silent p.V539V 0.88 TCGA-GN-A8LK-06 12 56428657 56428657 C T IKZF4 Missense_Mutation p.L434F 1.00 tolerated(0.15) benign(0.297) TCGA-GN-A8LK-06 12 56743519 56743519 C T STAT2 Intron 1.00 TCGA-GN-A8LK-06 12 56995665 56995665 G A BAZ2A Silent p.L1248L 0.92 TCGA-GN-A8LK-06 12 5724354 5724354 C T ANO2 Silent p.G642G 0.38 TCGA-GN-A8LK-06 12 57327751 57327751 C T SDR9C7 Missense_Mutation p.E99K 0.93 deleterious(0.02) benign(0.195) TCGA-GN-A8LK-06 12 57571253 57571288 GAGGCAGCCTCCATGAGTGGGGCTGGGCGCCGCACC - LRP1 In_Frame_Del p.E1414_T1425del 0.78 TCGA-GN-A8LK-06 12 57578972 57578972 C T LRP1 Silent p.N2149N 0.95 TCGA-GN-A8LK-06 12 58131238 58131238 C T AGAP2 Silent p.G264G 1.00 TCGA-GN-A8LK-06 12 58131239 58131239 C T AGAP2 Missense_Mutation p.G264E 1.00 deleterious_low_confidence(0) benign(0.071) TCGA-GN-A8LK-06 12 5941643 5941643 G A ANO2 Missense_Mutation p.P250S 0.49 tolerated(0.08) possibly_damaging(0.861) TCGA-GN-A8LK-06 12 62696588 62696588 C T USP15 Missense_Mutation p.L79F 0.94 deleterious(0.01) probably_damaging(0.977) TCGA-GN-A8LK-06 12 63974487 63974487 G A DPY19L2 Missense_Mutation p.P619S 0.93 deleterious(0) possibly_damaging(0.771) TCGA-GN-A8LK-06 12 66712545 66712545 C T HELB Nonsense_Mutation p.Q710* 0.43 TCGA-GN-A8LK-06 12 6729420 6729420 G A LPAR5 Missense_Mutation p.S332F 0.62 deleterious(0.03) benign(0.014) TCGA-GN-A8LK-06 12 6787309 6787309 C T ZNF384 Missense_Mutation p.D224N 0.48 deleterious(0.01) possibly_damaging(0.837) TCGA-GN-A8LK-06 12 68042900 68042900 C T DYRK2 5'UTR 0.19 TCGA-GN-A8LK-06 12 70189012 70189012 G A RAB3IP Missense_Mutation p.G275E 0.57 tolerated(1) benign(0.395) TCGA-GN-A8LK-06 12 70189137 70189137 G A RAB3IP Intron 0.54 TCGA-GN-A8LK-06 12 70914030 70914030 G A PTPRB 3'UTR 0.18 TCGA-GN-A8LK-06 12 70963513 70963513 G A PTPRB Silent p.I1192I 0.57 TCGA-GN-A8LK-06 12 70970257 70970257 G A PTPRB Missense_Mutation p.S916F 0.35 deleterious(0.02) possibly_damaging(0.828) TCGA-GN-A8LK-06 12 71094953 71094953 G A PTPRR Silent p.V386V 0.56 TCGA-GN-A8LK-06 12 72316885 72316885 A T TBC1D15 Missense_Mutation p.Q659H 0.38 deleterious_low_confidence(0.05) benign(0.002) TCGA-GN-A8LK-06 12 73012738 73012738 C T TRHDE Missense_Mutation p.L752F 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A8LK-06 12 7548819 7548819 C T CD163L1 Missense_Mutation p.G641E 0.48 deleterious(0) probably_damaging(0.99) TCGA-GN-A8LK-06 12 75816830 75816830 G A GLIPR1L2 Intron 0.34 TCGA-GN-A8LK-06 12 7593773 7593773 G A CD163L1 Missense_Mutation p.S34F 0.40 deleterious(0) benign(0.151) TCGA-GN-A8LK-06 12 7653786 7653786 C T CD163 Missense_Mutation p.G136R 0.40 tolerated(0.08) probably_damaging(0.997) TCGA-GN-A8LK-06 12 7843271 7843271 G A GDF3 Nonsense_Mutation p.Q100* 0.39 TCGA-GN-A8LK-06 12 78516161 78516161 G C NAV3 Missense_Mutation p.Q1397H 0.33 tolerated(0.14) probably_damaging(0.979) TCGA-GN-A8LK-06 12 80750206 80750206 G A OTOGL Silent p.T1930T 0.28 TCGA-GN-A8LK-06 12 80762063 80762063 G A OTOGL Missense_Mutation p.E2188K 0.46 tolerated(0.12) benign(0.228) TCGA-GN-A8LK-06 12 80771701 80771701 G A OTOGL Missense_Mutation p.R2303K 0.55 deleterious(0.03) benign(0.022) TCGA-GN-A8LK-06 12 8374817 8374817 T C FAM90A1 Silent p.Q332Q 0.31 TCGA-GN-A8LK-06 12 85408201 85408201 A G TSPAN19 3'UTR 0.40 TCGA-GN-A8LK-06 12 8759590 8759590 C T AICDA Silent p.R9R 0.45 TCGA-GN-A8LK-06 12 88390364 88390364 C T C12orf50 Missense_Mutation p.E117K 0.50 deleterious(0) possibly_damaging(0.631) TCGA-GN-A8LK-06 12 91347366 91347366 T C CCER1 Missense_Mutation p.N385S 0.39 tolerated(1) unknown(0) TCGA-GN-A8LK-06 12 92814813 92814813 C T CLLU1OS Silent p.G93G 0.56 TCGA-GN-A8LK-06 12 95456481 95456481 G A NR2C1 Nonsense_Mutation p.Q30* 0.55 TCGA-GN-A8LK-06 12 987405 987405 C T WNK1 Missense_Mutation p.P751S 0.41 tolerated(0.37) unknown(0) TCGA-GN-A8LK-06 12 99102432 99102432 C T APAF1 Nonsense_Mutation p.Q931* 0.31 TCGA-GN-A8LK-06 12 99225842 99225842 G A ANKS1B Missense_Mutation p.P951S 0.44 deleterious(0.03) benign(0.24) TCGA-GN-A8LK-06 12 99640060 99640060 C T ANKS1B Nonsense_Mutation p.W780* 0.39 TCGA-GN-A8LK-06 13 101710319 101710319 C T NALCN Silent p.R1665R 0.92 TCGA-GN-A8LK-06 13 101742284 101742284 C T NALCN Silent p.V1101V 0.98 TCGA-GN-A8LK-06 13 103054048 103054048 C T FGF14 5'UTR 0.84 TCGA-GN-A8LK-06 13 107211992 107211992 T A ARGLU1 Missense_Mutation p.I121L 0.91 tolerated(0.45) benign(0.068) TCGA-GN-A8LK-06 13 111114713 111114713 C G COL4A2 Silent p.P586P 0.89 TCGA-GN-A8LK-06 13 113773241 113773241 C T F7 Silent p.V440V 0.89 TCGA-GN-A8LK-06 13 113773386 113773386 C T F7 3'UTR 1.00 TCGA-GN-A8LK-06 13 114773044 114773044 G A RASA3 Silent p.P569P 0.69 TCGA-GN-A8LK-06 13 25016821 25016821 C T PARP4 Missense_Mutation p.M1150I 0.22 deleterious(0.02) benign(0.131) TCGA-GN-A8LK-06 13 25480555 25480555 G A CENPJ Missense_Mutation p.P541S 0.58 tolerated(0.56) benign(0.004) TCGA-GN-A8LK-06 13 26273402 26273402 C T ATP8A2 Missense_Mutation p.T768I 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 13 28141784 28141784 A G LNX2 Missense_Mutation p.I283T 0.70 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 13 28601275 28601275 C T FLT3 Silent p.K719K 0.34 TCGA-GN-A8LK-06 13 29275541 29275541 G A SLC46A3 Intron 0.64 TCGA-GN-A8LK-06 13 31711433 31711433 G A HSPH1 3'UTR 0.58 TCGA-GN-A8LK-06 13 32366017 32366017 C T RXFP2 Missense_Mutation p.S407F 0.61 deleterious(0) probably_damaging(0.988) TCGA-GN-A8LK-06 13 38357263 38357263 C T TRPC4 Missense_Mutation p.G70R 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 13 39546724 39546724 G A STOML3 Silent p.I79I 0.67 TCGA-GN-A8LK-06 13 42303782 42303782 A T VWA8 Missense_Mutation p.V845E 0.62 deleterious(0) probably_damaging(0.977) TCGA-GN-A8LK-06 13 50235083 50235083 G A EBPL 3'UTR 0.28 TCGA-GN-A8LK-06 13 51854837 51854837 C T FAM124A Silent p.S398S 0.64 TCGA-GN-A8LK-06 13 70681805 70681805 G A KLHL1 Silent p.F9F 0.70 TCGA-GN-A8LK-06 13 77636810 77636810 A G MYCBP2 Missense_Mutation p.L4194P 0.57 probably_damaging(0.993) TCGA-GN-A8LK-06 13 79190102 79190103 - TTAG RNF219 Nonsense_Mutation p.D599* 0.40 TCGA-GN-A8LK-06 13 84454164 84454164 C T SLITRK1 Silent p.G493G 0.35 TCGA-GN-A8LK-06 13 92101015 92101015 G A GPC5 Missense_Mutation p.G55E 0.47 tolerated(0.09) probably_damaging(0.913) TCGA-GN-A8LK-06 13 92345973 92345973 G C GPC5 Silent p.A286A 0.41 TCGA-GN-A8LK-06 13 98829457 98829457 C T RNF113B Missense_Mutation p.D12N 0.90 tolerated(0.14) benign(0.07) TCGA-GN-A8LK-06 13 98865613 98865613 C T FARP1 Silent p.L39L 0.91 TCGA-GN-A8LK-06 13 99047569 99047569 C T FARP1 Missense_Mutation p.S418F 0.97 deleterious(0.04) benign(0.172) TCGA-GN-A8LK-06 14 100604201 100604201 C T EVL Intron 0.87 TCGA-GN-A8LK-06 14 101349277 101349277 C T RTL1 Missense_Mutation p.E617K 0.91 tolerated(0.32) benign(0.016) TCGA-GN-A8LK-06 14 101520714 101520714 C T MIR382 RNA 0.94 TCGA-GN-A8LK-06 14 102483444 102483444 C T DYNC1H1 Missense_Mutation p.S2623F 0.90 probably_damaging(1) TCGA-GN-A8LK-06 14 102793105 102793105 G A ZNF839 Missense_Mutation p.G358R 1.00 deleterious(0.01) possibly_damaging(0.886) TCGA-GN-A8LK-06 14 102793106 102793106 G A ZNF839 Missense_Mutation p.G358E 1.00 tolerated(0.06) probably_damaging(0.994) TCGA-GN-A8LK-06 14 103986074 103986074 G A CKB 3'UTR 0.88 TCGA-GN-A8LK-06 14 105414440 105414440 C T AHNAK2 Missense_Mutation p.E2450K 0.95 benign(0.002) TCGA-GN-A8LK-06 14 107083274 107083274 G A IGHV4-59 Silent p.A110A 0.84 TCGA-GN-A8LK-06 14 107170356 107170356 G A IGHV1-69 Silent p.T4T 0.48 TCGA-GN-A8LK-06 14 19553512 19553512 C T POTEG Silent p.F32F 0.11 TCGA-GN-A8LK-06 14 20019999 20019999 C T POTEM Silent p.G74G 0.18 TCGA-GN-A8LK-06 14 20020125 20020125 G A POTEM Silent p.F32F 0.19 TCGA-GN-A8LK-06 14 20295671 20295671 G A OR4N2 Missense_Mutation p.D22N 0.46 tolerated(0.11) benign(0.002) TCGA-GN-A8LK-06 14 20295871 20295871 G A OR4N2 Silent p.A88A 0.43 TCGA-GN-A8LK-06 14 20345023 20345023 G A OR4K2 Missense_Mutation p.M199I 0.49 tolerated(0.6) probably_damaging(0.998) TCGA-GN-A8LK-06 14 20389385 20389385 C T OR4K5 Missense_Mutation p.S207F 0.41 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LK-06 14 20389415 20389415 C T OR4K5 Missense_Mutation p.S217F 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 14 20389700 20389700 C T OR4K5 Missense_Mutation p.S312F 0.45 deleterious(0.03) benign(0.027) TCGA-GN-A8LK-06 14 20404410 20404410 G A OR4K1 Missense_Mutation p.M195I 0.46 tolerated(0.12) benign(0.001) TCGA-GN-A8LK-06 14 20502694 20502694 G A OR4K13 Missense_Mutation p.S75F 0.43 deleterious(0.01) benign(0.019) TCGA-GN-A8LK-06 14 20585619 20585619 C T OR4K17 Silent p.L18L 0.43 TCGA-GN-A8LK-06 14 20586133 20586133 C T OR4K17 Nonsense_Mutation p.Q190* 0.49 TCGA-GN-A8LK-06 14 20854260 20854260 G A TEP1 Missense_Mutation p.L986F 0.56 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 14 22192023 22192023 G A TRAV3 5'UTR 0.38 TCGA-GN-A8LK-06 14 22265929 22265929 C T TRAV8-1 Missense_Mutation p.S71L 0.42 deleterious(0.03) benign(0.099) TCGA-GN-A8LK-06 14 22471624 22471624 G A TRAV18 Missense_Mutation p.R16K 0.43 tolerated(0.5) benign(0.073) TCGA-GN-A8LK-06 14 22783181 22783181 C T TRAV40 Silent p.T49T 0.43 TCGA-GN-A8LK-06 14 23072431 23072431 C T ABHD4 Silent p.L83L 0.46 TCGA-GN-A8LK-06 14 23524882 23524882 G A CDH24 Silent p.L21L 0.50 TCGA-GN-A8LK-06 14 23598903 23598903 T C SLC7A8 Missense_Mutation p.I407V 0.46 tolerated(0.12) benign(0.039) TCGA-GN-A8LK-06 14 23869929 23869929 C T MYH6 Missense_Mutation p.E467K 0.38 deleterious(0) possibly_damaging(0.495) TCGA-GN-A8LK-06 14 23888755 23888755 C T MYH7 Missense_Mutation p.E1264K 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-GN-A8LK-06 14 23892860 23892860 G A MYH7 Silent p.L999L 0.41 TCGA-GN-A8LK-06 14 24035105 24035105 G A AP1G2 Intron 0.45 TCGA-GN-A8LK-06 14 24114071 24114071 G A DHRS2 Missense_Mutation p.R241K 0.48 tolerated(0.99) benign(0.004) TCGA-GN-A8LK-06 14 24543530 24543530 G A CPNE6 Missense_Mutation p.D152N 0.52 tolerated(0.14) benign(0.432) TCGA-GN-A8LK-06 14 24545748 24545748 G A CPNE6 Missense_Mutation p.E383K 0.38 tolerated(0.17) benign(0.145) TCGA-GN-A8LK-06 14 24728323 24728323 G A TGM1 Missense_Mutation p.P373S 0.39 tolerated(0.22) possibly_damaging(0.882) TCGA-GN-A8LK-06 14 24792185 24792185 G A ADCY4 Missense_Mutation p.S756F 0.36 tolerated(0.18) benign(0.259) TCGA-GN-A8LK-06 14 24806429 24806429 G A RIPK3 Missense_Mutation p.P380S 0.51 tolerated(0.54) benign(0.03) TCGA-GN-A8LK-06 14 35779998 35779998 A T PSMA6 Missense_Mutation p.K102N 0.46 tolerated(0.05) benign(0.052) TCGA-GN-A8LK-06 14 37739625 37739625 C T MIPOL1 Missense_Mutation p.L130F 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A8LK-06 14 38295457 38295457 C T TTC6 Missense_Mutation p.P1678S 0.44 tolerated(0.08) probably_damaging(0.943) TCGA-GN-A8LK-06 14 45496607 45496607 C T FAM179B Missense_Mutation p.P1145L 0.49 tolerated(0.13) benign(0.144) TCGA-GN-A8LK-06 14 52734930 52734930 C T PTGDR Missense_Mutation p.S133F 0.47 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 14 53175024 53175024 C T PSMC6 Intron 0.58 TCGA-GN-A8LK-06 14 55429797 55429797 G A WDHD1 Missense_Mutation p.R802C 0.45 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LK-06 14 56146356 56146356 C T KTN1 Missense_Mutation p.A1341V 0.40 deleterious(0.01) benign(0.093) TCGA-GN-A8LK-06 14 57269054 57269054 C T OTX2 Missense_Mutation p.R98K 0.39 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 14 58598355 58598355 C T C14orf37 Missense_Mutation p.G569E 0.50 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 14 60074201 60074201 A G RTN1 Missense_Mutation p.L592P 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 14 62567210 62567210 G A SYT16 Missense_Mutation p.E575K 0.71 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 14 63447746 63447746 G A KCNH5 Silent p.I262I 0.59 TCGA-GN-A8LK-06 14 63511856 63511856 C T KCNH5 Missense_Mutation p.E17K 0.43 deleterious(0) probably_damaging(0.985) TCGA-GN-A8LK-06 14 63779733 63779733 G A GPHB5 RNA 0.33 TCGA-GN-A8LK-06 14 64989612 64989612 C T ZBTB1 Nonsense_Mutation p.Q464* 0.46 TCGA-GN-A8LK-06 14 65234495 65234495 C T SPTB Silent p.G2035G 0.40 TCGA-GN-A8LK-06 14 65262322 65262322 G A SPTB Silent p.A459A 0.54 TCGA-GN-A8LK-06 14 67853875 67853875 A G PLEK2 3'UTR 0.54 TCGA-GN-A8LK-06 14 69256131 69256131 T C ZFP36L1 3'UTR 0.54 TCGA-GN-A8LK-06 14 69341476 69341476 G A ACTN1 3'UTR 0.63 TCGA-GN-A8LK-06 14 69349239 69349239 C T ACTN1 Missense_Mutation p.R630K 0.65 tolerated(0.31) benign(0.001) TCGA-GN-A8LK-06 14 69695777 69695777 C A EXD2 Missense_Mutation p.A193D 0.46 deleterious(0) possibly_damaging(0.84) TCGA-GN-A8LK-06 14 69695778 69695778 C T EXD2 Silent p.A193A 0.46 TCGA-GN-A8LK-06 14 70512722 70512722 C T SLC8A3 Nonsense_Mutation p.W909* 0.54 TCGA-GN-A8LK-06 14 70527572 70527572 C T SLC8A3 Nonsense_Mutation p.W623* 0.54 TCGA-GN-A8LK-06 14 70634928 70634928 C T SLC8A3 Missense_Mutation p.G71E 0.50 deleterious(0.01) probably_damaging(0.988) TCGA-GN-A8LK-06 14 72985095 72985095 C T RGS6 Silent p.P376P 0.91 TCGA-GN-A8LK-06 14 75230189 75230189 C T YLPM1 5'UTR 0.92 TCGA-GN-A8LK-06 14 75265635 75265635 C T YLPM1 Missense_Mutation p.P1212L 0.80 possibly_damaging(0.579) TCGA-GN-A8LK-06 14 75276414 75276414 C T YLPM1 Missense_Mutation p.P1618L 0.91 benign(0.13) TCGA-GN-A8LK-06 14 75329980 75329980 C T PROX2 Nonsense_Mutation p.W186* 1.00 TCGA-GN-A8LK-06 14 75329981 75329981 C T PROX2 Nonsense_Mutation p.W186* 1.00 TCGA-GN-A8LK-06 14 78174201 78174201 G A ALKBH1 Silent p.A49A 0.86 TCGA-GN-A8LK-06 14 78174202 78174202 G A ALKBH1 Missense_Mutation p.A49V 0.83 tolerated(0.06) benign(0.002) TCGA-GN-A8LK-06 14 86089123 86089123 C T FLRT2 Missense_Mutation p.S422F 0.90 deleterious(0.04) benign(0.106) TCGA-GN-A8LK-06 14 89039313 89039313 C T ZC3H14 Missense_Mutation p.P275S 0.94 tolerated(0.13) probably_damaging(0.999) TCGA-GN-A8LK-06 14 92439115 92439115 G A TRIP11 Silent p.L1889L 0.92 TCGA-GN-A8LK-06 14 93180783 93180783 G A LGMN Missense_Mutation p.H140Y 0.91 deleterious(0.01) benign(0.378) TCGA-GN-A8LK-06 14 93398029 93398029 G A CHGA Missense_Mutation p.E264K 0.89 tolerated(0.05) possibly_damaging(0.897) TCGA-GN-A8LK-06 14 94423316 94423316 G T ASB2 Intron 0.96 TCGA-GN-A8LK-06 14 94942497 94942497 C T SERPINA9 Missense_Mutation p.G5S 0.95 tolerated_low_confidence(0.59) benign(0.07) TCGA-GN-A8LK-06 14 96731048 96731048 G A BDKRB1 Silent p.R343R 0.89 TCGA-GN-A8LK-06 15 100942941 100942941 G A CERS3 Missense_Mutation p.P377S 0.65 tolerated(0.79) benign(0.154) TCGA-GN-A8LK-06 15 102358559 102358559 C T OR4F15 Missense_Mutation p.S57F 0.27 deleterious_low_confidence(0.01) benign(0.078) TCGA-GN-A8LK-06 15 20495377 20495377 G A CHEK2P2 RNA 0.85 TCGA-GN-A8LK-06 15 23689138 23689138 C T GOLGA6L2 Missense_Mutation p.R126K 1.00 benign(0.093) TCGA-GN-A8LK-06 15 24922597 24922597 C T NPAP1 Missense_Mutation p.S528F 0.90 tolerated(0.56) benign(0.041) TCGA-GN-A8LK-06 15 25457023 25457023 C T SNORD115-23 RNA 0.89 TCGA-GN-A8LK-06 15 25492309 25492309 G A SNORD115-40 3'Flank 1.00 TCGA-GN-A8LK-06 15 33833061 33833061 C T RYR3 Missense_Mutation p.P206S 0.96 possibly_damaging(0.48) TCGA-GN-A8LK-06 15 33927893 33927893 G A RYR3 Missense_Mutation p.G1085E 0.96 probably_damaging(1) TCGA-GN-A8LK-06 15 33955035 33955035 G A RYR3 Silent p.K1768K 0.94 TCGA-GN-A8LK-06 15 34078084 34078084 G A RYR3 Missense_Mutation p.V3164I 0.90 benign(0.029) TCGA-GN-A8LK-06 15 34635360 34635360 C T NOP10 5'UTR 0.95 TCGA-GN-A8LK-06 15 34635361 34635361 C T NOP10 5'UTR 0.95 TCGA-GN-A8LK-06 15 34649694 34649694 G A NUTM1 3'UTR 0.87 TCGA-GN-A8LK-06 15 35155185 35155185 G A AQR Silent p.F1304F 0.97 TCGA-GN-A8LK-06 15 42373304 42373304 C T PLA2G4D Missense_Mutation p.G329R 0.95 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 15 45392017 45392017 C T DUOX2 Silent p.T1086T 0.91 TCGA-GN-A8LK-06 15 45555350 45555350 G A SLC28A2 Silent p.L118L 0.97 TCGA-GN-A8LK-06 15 45781230 45781230 G A SLC30A4 Silent p.L235L 0.97 TCGA-GN-A8LK-06 15 49089689 49089689 G A CEP152 Missense_Mutation p.P117S 0.93 tolerated(0.89) benign(0.015) TCGA-GN-A8LK-06 15 51839457 51839457 G A DMXL2 Missense_Mutation p.S239L 0.44 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 15 52263946 52263946 C G LEO1 5'UTR 0.97 TCGA-GN-A8LK-06 15 52643459 52643459 G A MYO5A Nonsense_Mutation p.Q1281* 0.44 TCGA-GN-A8LK-06 15 54685258 54685258 G A UNC13C Missense_Mutation p.D1576N 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.872) TCGA-GN-A8LK-06 15 56386450 56386450 C T RFX7 Missense_Mutation p.S1159N 0.94 tolerated_low_confidence(0.4) benign(0.003) TCGA-GN-A8LK-06 15 57836782 57836782 G T CGNL1 Nonsense_Mutation p.E1163* 0.60 TCGA-GN-A8LK-06 15 58306128 58306128 C T ALDH1A2 Missense_Mutation p.M97I 0.29 deleterious(0.02) benign(0.203) TCGA-GN-A8LK-06 15 60297918 60297918 G A FOXB1 Silent p.A252A 0.26 TCGA-GN-A8LK-06 15 62212286 62212286 G A VPS13C Missense_Mutation p.S2486F 0.25 deleterious(0.04) possibly_damaging(0.541) TCGA-GN-A8LK-06 15 63349238 63349238 T C TPM1 Silent p.L99L 0.29 TCGA-GN-A8LK-06 15 65112108 65112108 C T PIF1 Missense_Mutation p.R424K 0.36 tolerated(0.07) benign(0.198) TCGA-GN-A8LK-06 15 65917236 65917236 G A SLC24A1 Missense_Mutation p.R273K 0.65 benign(0.004) TCGA-GN-A8LK-06 15 67664722 67664722 C T IQCH Missense_Mutation p.L343F 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 15 71124348 71124348 G A LARP6 3'UTR 0.34 TCGA-GN-A8LK-06 15 71193290 71193290 T A LRRC49 Missense_Mutation p.L80M 0.60 tolerated(0.32) benign(0.003) TCGA-GN-A8LK-06 15 71196937 71196937 C T LRRC49 Missense_Mutation p.R120C 0.68 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 15 74032246 74032246 C T C15orf59 3'UTR 0.45 TCGA-GN-A8LK-06 15 74368092 74368092 C T GOLGA6A Missense_Mutation p.E231K 0.26 tolerated(0.08) benign(0.003) TCGA-GN-A8LK-06 15 74425947 74425947 G A ISLR2 Silent p.E284E 0.26 TCGA-GN-A8LK-06 15 74627442 74627442 C T CCDC33 Intron 0.30 TCGA-GN-A8LK-06 15 75651725 75651725 G A MAN2C1 Missense_Mutation p.S668F 0.69 tolerated(0.05) benign(0.113) TCGA-GN-A8LK-06 15 75672975 75672975 G A SIN3A Silent p.L1126L 0.68 TCGA-GN-A8LK-06 15 75706620 75706620 C T SIN3A Silent p.V133V 0.26 TCGA-GN-A8LK-06 15 75982621 75982621 G A CSPG4 Missense_Mutation p.A262V 0.70 tolerated(0.09) probably_damaging(0.975) TCGA-GN-A8LK-06 15 78301377 78301377 G A TBC1D2B Missense_Mutation p.P784S 0.29 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 15 78466033 78466033 C T ACSBG1 Missense_Mutation p.G664E 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 15 78780591 78780591 C T IREB2 Missense_Mutation p.R622C 0.58 deleterious(0.05) benign(0.047) TCGA-GN-A8LK-06 15 79277370 79277370 C G RASGRF1 Silent p.T1147T 0.27 TCGA-GN-A8LK-06 15 79291123 79291123 G A RASGRF1 Missense_Mutation p.R947C 0.64 deleterious(0.02) probably_damaging(0.921) TCGA-GN-A8LK-06 15 79291163 79291163 A G RASGRF1 Silent p.F933F 0.33 TCGA-GN-A8LK-06 15 81214439 81214439 G A KIAA1199 Silent p.L721L 0.31 TCGA-GN-A8LK-06 15 81633741 81633741 G A TMC3 Nonsense_Mutation p.R612* 0.21 TCGA-GN-A8LK-06 15 83455629 83455629 C T FSD2 Missense_Mutation p.E172K 0.36 tolerated(0.43) probably_damaging(0.999) TCGA-GN-A8LK-06 15 83932152 83932152 G A BNC1 Silent p.S617S 0.64 TCGA-GN-A8LK-06 15 85328046 85328046 C T ZNF592 Missense_Mutation p.L714F 0.30 tolerated(0.07) benign(0.011) TCGA-GN-A8LK-06 15 86313789 86313789 G A KLHL25 Intron 0.39 TCGA-GN-A8LK-06 15 86807489 86807489 G A AGBL1 Missense_Mutation p.E317K 0.74 deleterious(0) possibly_damaging(0.627) TCGA-GN-A8LK-06 15 87572181 87572181 G A AGBL1 3'UTR 0.71 TCGA-GN-A8LK-06 15 88669548 88669548 G A NTRK3 Silent p.F450F 0.32 TCGA-GN-A8LK-06 15 88679776 88679776 G A NTRK3 Silent p.I229I 0.24 TCGA-GN-A8LK-06 15 90258298 90258298 C T WDR93 Missense_Mutation p.P243L 0.24 tolerated(0.45) benign(0.013) TCGA-GN-A8LK-06 15 91455456 91455456 C T MAN2A2 Missense_Mutation p.L765F 0.26 deleterious(0.04) possibly_damaging(0.551) TCGA-GN-A8LK-06 15 91811791 91811791 G A SV2B Silent p.T443T 0.32 TCGA-GN-A8LK-06 15 99478082 99478082 C T IGF1R Missense_Mutation p.R996W 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 16 10729650 10729650 C T TEKT5 Missense_Mutation p.M404I 0.43 tolerated(0.59) benign(0.002) TCGA-GN-A8LK-06 16 1308196 1308196 G A TPSD1 Silent p.A219A 0.39 TCGA-GN-A8LK-06 16 1398406 1398406 G A BAIAP3 Missense_Mutation p.G1163S 0.32 tolerated(0.07) possibly_damaging(0.666) TCGA-GN-A8LK-06 16 1398407 1398407 G A BAIAP3 Missense_Mutation p.G1163D 0.32 deleterious(0.02) probably_damaging(0.955) TCGA-GN-A8LK-06 16 14014015 14014015 G A ERCC4 5'UTR 0.44 TCGA-GN-A8LK-06 16 14969212 14969212 C T NOMO1 Silent p.I763I 0.28 TCGA-GN-A8LK-06 16 15159092 15159092 G A RRN3 Missense_Mutation p.P564S 0.43 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 16 1569959 1569959 G T IFT140 Missense_Mutation p.S1321R 0.55 tolerated(0.23) benign(0.365) TCGA-GN-A8LK-06 16 1569965 1569965 G A IFT140 Silent p.A1319A 0.56 TCGA-GN-A8LK-06 16 15817990 15817990 A T NDE1 Intron 0.48 TCGA-GN-A8LK-06 16 15820813 15820813 C T MYH11 Silent p.V1257V 0.43 TCGA-GN-A8LK-06 16 15839043 15839043 C T MYH11 Silent p.R828R 0.47 TCGA-GN-A8LK-06 16 16110374 16110374 C T ABCC1 Missense_Mutation p.R171C 0.41 deleterious(0) probably_damaging(0.953) TCGA-GN-A8LK-06 16 19032997 19032997 C T TMC7 Silent p.F169F 0.38 TCGA-GN-A8LK-06 16 19455513 19455513 C T TMC5 Missense_Mutation p.S300F 0.53 deleterious(0) possibly_damaging(0.563) TCGA-GN-A8LK-06 16 19475337 19475337 C T TMC5 Silent p.F492F 0.40 TCGA-GN-A8LK-06 16 19725704 19725704 G A KNOP1 Silent p.I218I 0.41 TCGA-GN-A8LK-06 16 19884108 19884108 G A GPRC5B Silent p.L20L 0.31 TCGA-GN-A8LK-06 16 20043397 20043397 C T GPR139 Nonsense_Mutation p.W241* 0.51 TCGA-GN-A8LK-06 16 20489904 20489904 G A ACSM2A Missense_Mutation p.D396N 0.48 deleterious(0.02) probably_damaging(0.948) TCGA-GN-A8LK-06 16 2049591 2049591 G A ZNF598 Silent p.L653L 0.40 TCGA-GN-A8LK-06 16 20693613 20693613 G A ACSM1 Silent p.S192S 0.48 TCGA-GN-A8LK-06 16 2086770 2086770 G A SLC9A3R2 Silent p.V212V 0.48 TCGA-GN-A8LK-06 16 21049094 21049094 G A DNAH3 Missense_Mutation p.P1647S 0.41 deleterious(0.02) possibly_damaging(0.562) TCGA-GN-A8LK-06 16 21108688 21108688 C T DNAH3 Missense_Mutation p.E885K 0.52 tolerated(0.98) benign(0.01) TCGA-GN-A8LK-06 16 21108707 21108707 C G DNAH3 Missense_Mutation p.E878D 0.47 tolerated(0.5) benign(0.006) TCGA-GN-A8LK-06 16 21213516 21213516 C T ZP2 Missense_Mutation p.G399E 0.36 tolerated(0.07) probably_damaging(0.994) TCGA-GN-A8LK-06 16 21698854 21698854 C T OTOA Silent p.L174L 0.41 TCGA-GN-A8LK-06 16 2201702 2201702 G A RAB26 Missense_Mutation p.D119N 0.46 deleterious(0) probably_damaging(0.984) TCGA-GN-A8LK-06 16 22262483 22262483 C T EEF2K Missense_Mutation p.S153F 0.43 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 16 22926894 22926894 G A HS3ST2 3'UTR 0.51 TCGA-GN-A8LK-06 16 23535766 23535766 G A EARS2 Missense_Mutation p.P500S 0.41 tolerated(1) benign(0.007) TCGA-GN-A8LK-06 16 23711987 23711987 G A ERN2 Silent p.P514P 0.41 TCGA-GN-A8LK-06 16 24580076 24580076 C T RBBP6 Missense_Mutation p.P689S 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A8LK-06 16 24902308 24902308 C T SLC5A11 Silent p.F261F 0.49 TCGA-GN-A8LK-06 16 26147540 26147540 C T HS3ST4 Nonsense_Mutation p.Q448* 0.57 TCGA-GN-A8LK-06 16 27720130 27720130 C G KIAA0556 Silent p.V498V 0.53 TCGA-GN-A8LK-06 16 2814308 2814308 T C SRRM2 Missense_Mutation p.L1260P 0.46 unknown(0) TCGA-GN-A8LK-06 16 28602109 28602109 C T CCDC101 Silent p.S206S 0.50 TCGA-GN-A8LK-06 16 28841951 28841951 C T ATXN2L Silent p.I350I 0.41 TCGA-GN-A8LK-06 16 29086356 29086356 G A RRN3P2 RNA 0.50 TCGA-GN-A8LK-06 16 29675460 29675460 G A SPN Silent p.T137T 0.35 TCGA-GN-A8LK-06 16 29982856 29982856 C T TMEM219 Missense_Mutation p.T238I 0.50 deleterious_low_confidence(0.02) benign(0.261) TCGA-GN-A8LK-06 16 29982857 29982857 C T TMEM219 Silent p.T238T 0.51 TCGA-GN-A8LK-06 16 30408857 30408857 C T ZNF48 Missense_Mutation p.R96W 0.45 deleterious(0) benign(0.008) TCGA-GN-A8LK-06 16 30409384 30409384 G A ZNF48 Silent p.Q271Q 0.36 TCGA-GN-A8LK-06 16 3064031 3064031 C T CLDN9 3'UTR 0.39 TCGA-GN-A8LK-06 16 30941554 30941554 C T FBXL19 Missense_Mutation p.S337L 0.45 deleterious(0.04) possibly_damaging(0.784) TCGA-GN-A8LK-06 16 31049918 31049918 C T STX4 Missense_Mutation p.R218C 0.60 deleterious(0) probably_damaging(0.926) TCGA-GN-A8LK-06 16 31150296 31150296 C T PRSS36 3'UTR 0.50 TCGA-GN-A8LK-06 16 31195605 31195622 TGGACAGCAGCAAAGCTA - FUS In_Frame_Del p.G144_Y149del 0.22 TCGA-GN-A8LK-06 16 31235507 31235507 G A TRIM72 Missense_Mutation p.E289K 0.42 tolerated(0.1) benign(0.003) TCGA-GN-A8LK-06 16 31391122 31391122 C T ITGAX Silent p.F971F 0.47 TCGA-GN-A8LK-06 16 31471058 31471058 C T ARMC5 Silent p.L71L 0.50 TCGA-GN-A8LK-06 16 3254567 3254567 C T OR1F1 Silent p.F107F 0.44 TCGA-GN-A8LK-06 16 3254585 3254585 C T OR1F1 Silent p.F113F 0.46 TCGA-GN-A8LK-06 16 32894010 32894010 G A RP11-989E6.3 5'Flank 0.45 TCGA-GN-A8LK-06 16 32894011 32894011 G A RP11-989E6.3 5'Flank 0.45 TCGA-GN-A8LK-06 16 3632461 3632461 C T SLX4 Missense_Mutation p.R1796K 0.47 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 16 3794931 3794931 C T CREBBP Missense_Mutation p.G1316S 0.28 unknown(0) TCGA-GN-A8LK-06 16 4254631 4254631 C T SRL Silent p.E22E 0.46 TCGA-GN-A8LK-06 16 48162649 48162649 C T ABCC12 Splice_Site p.X413_splice 0.88 TCGA-GN-A8LK-06 16 4837630 4837630 C T SEPT12 Missense_Mutation p.R6H 0.55 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A8LK-06 16 48596298 48596298 C T N4BP1 Missense_Mutation p.D86N 0.97 deleterious(0.01) possibly_damaging(0.588) TCGA-GN-A8LK-06 16 4882796 4882796 C T GLYR1 Silent p.R91R 0.42 TCGA-GN-A8LK-06 16 50745136 50745136 C T NOD2 Silent p.I438I 0.93 TCGA-GN-A8LK-06 16 51174980 51174980 T C SALL1 Missense_Mutation p.S385G 0.93 tolerated(0.13) benign(0.003) TCGA-GN-A8LK-06 16 55857517 55857517 C T CES1 Missense_Mutation p.E162K 0.42 deleterious(0.02) possibly_damaging(0.9) TCGA-GN-A8LK-06 16 56933514 56933514 C T SLC12A3 Silent p.N911N 0.38 TCGA-GN-A8LK-06 16 57712181 57712181 C T GPR97 Missense_Mutation p.R149C 0.36 deleterious(0) possibly_damaging(0.614) TCGA-GN-A8LK-06 16 57717862 57717862 C T GPR97 Silent p.F300F 0.43 TCGA-GN-A8LK-06 16 58032114 58032114 G A ZNF319 Missense_Mutation p.P19L 0.39 tolerated_low_confidence(0.32) benign(0) TCGA-GN-A8LK-06 16 67305118 67305118 A G SLC9A5 3'UTR 0.22 TCGA-GN-A8LK-06 16 67690163 67690163 C T RLTPR Missense_Mutation p.P1259S 0.43 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 16 67981583 67981583 G A SLC12A4 Silent p.I654I 0.41 TCGA-GN-A8LK-06 16 68057110 68057110 C T DDX28 5'UTR 0.45 TCGA-GN-A8LK-06 16 68405182 68405182 G A SMPD3 Silent p.S301S 0.42 TCGA-GN-A8LK-06 16 68405488 68405488 G A SMPD3 Silent p.A199A 0.48 TCGA-GN-A8LK-06 16 68732353 68732353 C T CDH3 3'UTR 0.53 TCGA-GN-A8LK-06 16 69373524 69373524 G A NIP7 5'UTR 0.64 TCGA-GN-A8LK-06 16 69689665 69689665 G A NFAT5 Missense_Mutation p.E387K 0.59 probably_damaging(0.999) TCGA-GN-A8LK-06 16 69969828 69969828 C T WWP2 Missense_Mutation p.P639S 0.59 deleterious(0.01) benign(0.257) TCGA-GN-A8LK-06 16 70390017 70390017 G A DDX19A Missense_Mutation p.D54N 0.50 tolerated(0.23) benign(0.041) TCGA-GN-A8LK-06 16 70690546 70690546 C A IL34 Nonsense_Mutation p.Y68* 0.41 TCGA-GN-A8LK-06 16 70796792 70796792 G A VAC14 Missense_Mutation p.P433S 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 16 71008203 71008203 C G HYDIN Missense_Mutation p.G1637A 0.39 probably_damaging(0.992) TCGA-GN-A8LK-06 16 71015338 71015338 C T HYDIN Missense_Mutation p.G1489E 0.35 probably_damaging(0.998) TCGA-GN-A8LK-06 16 71209581 71209581 C T HYDIN Missense_Mutation p.D149N 0.51 probably_damaging(0.967) TCGA-GN-A8LK-06 16 71408702 71408702 G A CALB2 Missense_Mutation p.D76N 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A8LK-06 16 71423801 71423801 C T CALB2 3'UTR 0.49 TCGA-GN-A8LK-06 16 71604727 71604727 G A TAT Missense_Mutation p.S256L 0.55 deleterious(0.05) benign(0.003) TCGA-GN-A8LK-06 16 71609857 71609857 G A TAT Missense_Mutation p.S103L 0.46 deleterious(0.02) benign(0.2) TCGA-GN-A8LK-06 16 71610225 71610225 C T TAT Missense_Mutation p.G32R 0.54 tolerated(0.26) benign(0.005) TCGA-GN-A8LK-06 16 74445633 74445633 G A CLEC18B Silent p.I306I 0.17 TCGA-GN-A8LK-06 16 77323273 77323273 C T ADAMTS18 Silent p.R1146R 0.97 TCGA-GN-A8LK-06 16 77323274 77323274 C T ADAMTS18 Missense_Mutation p.R1146Q 0.97 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 16 77326983 77326983 G A ADAMTS18 Missense_Mutation p.S1060L 0.97 deleterious(0.03) benign(0.311) TCGA-GN-A8LK-06 16 80718539 80718539 C T CDYL2 Missense_Mutation p.G171E 0.94 tolerated(0.41) benign(0.002) TCGA-GN-A8LK-06 16 81060212 81060212 C T CENPN Missense_Mutation p.P260L 0.83 tolerated(0.09) benign(0.05) TCGA-GN-A8LK-06 16 836139 836139 G A RPUSD1 Silent p.L250L 0.55 TCGA-GN-A8LK-06 16 87466772 87466772 G A ZCCHC14 Missense_Mutation p.H107Y 0.85 tolerated(0.13) possibly_damaging(0.904) TCGA-GN-A8LK-06 16 87466773 87466773 T A ZCCHC14 Silent p.S106S 0.92 TCGA-GN-A8LK-06 16 87466774 87466774 G A ZCCHC14 Missense_Mutation p.S106L 0.92 deleterious(0.05) benign(0.421) TCGA-GN-A8LK-06 16 8998387 8998387 G A USP7 Missense_Mutation p.P537S 0.40 tolerated(0.18) probably_damaging(0.957) TCGA-GN-A8LK-06 16 9009376 9009376 C T USP7 Missense_Mutation p.D305N 0.41 deleterious(0) probably_damaging(0.984) TCGA-GN-A8LK-06 16 9858238 9858238 C T GRIN2A Missense_Mutation p.E1055K 0.45 deleterious(0.01) possibly_damaging(0.814) TCGA-GN-A8LK-06 17 10227482 10227482 C T MYH13 Missense_Mutation p.E931K 0.52 deleterious(0.01) probably_damaging(0.98) TCGA-GN-A8LK-06 17 10247272 10247272 G A MYH13 Missense_Mutation p.S580L 0.49 deleterious(0.02) benign(0.128) TCGA-GN-A8LK-06 17 10295901 10295901 A G MYH8 Silent p.G1842G 0.36 TCGA-GN-A8LK-06 17 10346778 10346778 C T MYH4 Missense_Mutation p.E1912K 0.49 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 17 10351335 10351335 G T MYH4 Missense_Mutation p.Q1589K 0.46 tolerated(0.07) probably_damaging(0.996) TCGA-GN-A8LK-06 17 10397895 10397895 G A MYH1 Silent p.L1854L 0.50 TCGA-GN-A8LK-06 17 10430299 10430299 G A MYH2 Nonsense_Mutation p.Q1316* 0.41 TCGA-GN-A8LK-06 17 10432690 10432690 C T MYH2 Missense_Mutation p.E1076K 0.49 deleterious(0.01) probably_damaging(0.971) TCGA-GN-A8LK-06 17 10432905 10432905 G A MYH2 Silent p.I1031I 0.50 TCGA-GN-A8LK-06 17 10432997 10432997 C T MYH2 Missense_Mutation p.E1001K 0.41 deleterious(0.01) probably_damaging(0.927) TCGA-GN-A8LK-06 17 10440988 10440988 G A MYH2 Silent p.I527I 0.49 TCGA-GN-A8LK-06 17 11513782 11513782 C T DNAH9 Silent p.V228V 0.41 TCGA-GN-A8LK-06 17 11622799 11622799 G A DNAH9 Missense_Mutation p.D1901N 0.45 possibly_damaging(0.492) TCGA-GN-A8LK-06 17 12642544 12642544 G A MYOCD Missense_Mutation p.D206N 0.45 tolerated(0.44) benign(0.005) TCGA-GN-A8LK-06 17 12656354 12656354 C T MYOCD Silent p.S583S 0.43 TCGA-GN-A8LK-06 17 1373934 1373934 G A MYO1C Silent p.F754F 0.47 TCGA-GN-A8LK-06 17 13972835 13972835 G A COX10 5'Flank 0.38 TCGA-GN-A8LK-06 17 13972836 13972836 G A COX10 5'Flank 0.38 TCGA-GN-A8LK-06 17 1412519 1412519 C T INPP5K Silent p.E169E 0.47 TCGA-GN-A8LK-06 17 14683394 14683394 C T AC005863.1 RNA 0.45 TCGA-GN-A8LK-06 17 15341108 15341108 G A CDRT4 Silent p.L146L 0.50 TCGA-GN-A8LK-06 17 1584266 1584266 G A PRPF8 Missense_Mutation p.P317S 0.45 deleterious(0.01) probably_damaging(0.931) TCGA-GN-A8LK-06 17 15978961 15978961 G A NCOR1 Missense_Mutation p.S1186F 0.47 benign(0.309) TCGA-GN-A8LK-06 17 16612491 16612491 C T CCDC144A Missense_Mutation p.H374Y 0.41 tolerated_low_confidence(0.15) benign(0.024) TCGA-GN-A8LK-06 17 16638805 16638805 C T CCDC144A Nonsense_Mutation p.Q1074* 0.42 TCGA-GN-A8LK-06 17 16665005 16665005 A T CCDC144A Missense_Mutation p.K1213N 0.21 deleterious(0.05) probably_damaging(0.95) TCGA-GN-A8LK-06 17 16699380 16699380 G A CCDC144A 3'UTR 0.23 TCGA-GN-A8LK-06 17 1703376 1703376 C A SMYD4 Nonsense_Mutation p.E438* 0.51 TCGA-GN-A8LK-06 17 18196108 18196108 C T TOP3A Missense_Mutation p.V378M 0.42 deleterious(0.02) possibly_damaging(0.516) TCGA-GN-A8LK-06 17 18396127 18396127 G A LGALS9C Missense_Mutation p.R293Q 0.25 tolerated(0.05) probably_damaging(0.932) TCGA-GN-A8LK-06 17 1840429 1840429 G A RTN4RL1 Silent p.F229F 0.41 TCGA-GN-A8LK-06 17 18923826 18923826 G A SLC5A10 3'UTR 0.54 TCGA-GN-A8LK-06 17 20354840 20354840 C T LGALS9B Missense_Mutation p.R292Q 0.50 deleterious(0.04) probably_damaging(0.923) TCGA-GN-A8LK-06 17 21825528 21825528 G A FAM27L RNA 0.44 TCGA-GN-A8LK-06 17 21826322 21826322 C T FAM27L RNA 0.46 TCGA-GN-A8LK-06 17 2577499 2577499 C T PAFAH1B1 Nonsense_Mutation p.R273* 0.57 TCGA-GN-A8LK-06 17 25976011 25976011 G A LGALS9 3'UTR 0.89 TCGA-GN-A8LK-06 17 27438602 27438602 C T MYO18A Splice_Site p.X914_splice 1.00 TCGA-GN-A8LK-06 17 27901595 27901595 G A GIT1 3'UTR 1.00 TCGA-GN-A8LK-06 17 2934238 2934238 G A RAP1GAP2 Silent p.P710P 0.25 TCGA-GN-A8LK-06 17 29663789 29663791 ATG TA NF1 Frame_Shift_Del p.D2095Vfs*16 0.44 TCGA-GN-A8LK-06 17 2995721 2995721 G A OR1D2 Silent p.S190S 0.40 TCGA-GN-A8LK-06 17 3030088 3030088 C T OR1G1 Missense_Mutation p.G253E 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 32690126 32690126 C T CCL1 Missense_Mutation p.E19K 0.41 tolerated(0.14) benign(0.006) TCGA-GN-A8LK-06 17 33256027 33256027 C T CCT6B Missense_Mutation p.G493R 0.45 deleterious(0.03) possibly_damaging(0.679) TCGA-GN-A8LK-06 17 33477072 33477072 G A UNC45B Missense_Mutation p.D71N 0.47 deleterious(0.01) possibly_damaging(0.838) TCGA-GN-A8LK-06 17 33591830 33591830 T C SLFN5 Silent p.L589L 0.49 TCGA-GN-A8LK-06 17 33679805 33679805 C T SLFN11 Missense_Mutation p.G759E 0.48 tolerated(1) benign(0.004) TCGA-GN-A8LK-06 17 33690204 33690204 G A SLFN11 Missense_Mutation p.P208L 0.50 deleterious(0.03) possibly_damaging(0.698) TCGA-GN-A8LK-06 17 33690205 33690205 G A SLFN11 Missense_Mutation p.P208S 0.47 tolerated(0.38) benign(0.047) TCGA-GN-A8LK-06 17 33807009 33807009 C T SLFN12L Missense_Mutation p.G74R 0.28 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 17 3422011 3422011 G A TRPV3 Silent p.S648S 0.35 TCGA-GN-A8LK-06 17 34234091 34234091 G A AC015849.16 RNA 0.47 TCGA-GN-A8LK-06 17 34308429 34308429 G A CCL16 Missense_Mutation p.L10F 0.57 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A8LK-06 17 34797672 34797672 C T TBC1D3G Silent p.Q488Q 0.86 TCGA-GN-A8LK-06 17 34964184 34964184 C T MRM1 Missense_Mutation p.P239S 0.46 tolerated(0.06) benign(0.262) TCGA-GN-A8LK-06 17 3592831 3592831 G A P2RX5 Silent p.S236S 0.42 TCGA-GN-A8LK-06 17 37188305 37188305 G A CTD-2206N4.2 5'Flank 0.35 TCGA-GN-A8LK-06 17 37673806 37673806 C T CDK12 Missense_Mutation p.S987F 0.49 probably_damaging(0.989) TCGA-GN-A8LK-06 17 37871598 37871598 T C ERBB2 Missense_Mutation p.L403P 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 37949094 37949094 G A IKZF3 Missense_Mutation p.P86S 0.47 tolerated(0.51) benign(0.206) TCGA-GN-A8LK-06 17 38133095 38133095 C T GSDMA Silent p.F374F 0.46 TCGA-GN-A8LK-06 17 38936698 38936698 C T KRT27 Missense_Mutation p.E180K 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 17 39334338 39334338 G T KRTAP4-2 Missense_Mutation p.Q27K 0.44 tolerated(0.06) unknown(0) TCGA-GN-A8LK-06 17 39411681 39411681 G A KRTAP9-9 Missense_Mutation p.R15K 0.13 tolerated(0.12) unknown(0) TCGA-GN-A8LK-06 17 39553697 39553697 G A KRT31 Missense_Mutation p.P32L 0.48 tolerated(0.05) probably_damaging(0.999) TCGA-GN-A8LK-06 17 39671070 39671070 C T KRT15 Intron 0.36 TCGA-GN-A8LK-06 17 39726248 39726248 G A KRT9 Silent p.L249L 0.51 TCGA-GN-A8LK-06 17 39890615 39890615 C T HAP1 Missense_Mutation p.G91E 0.44 tolerated_low_confidence(0.05) probably_damaging(0.969) TCGA-GN-A8LK-06 17 40010206 40010206 C T KLHL11 Missense_Mutation p.R638K 0.45 tolerated(0.85) benign(0.007) TCGA-GN-A8LK-06 17 40851033 40851033 A G CNTNAP1 3'UTR 0.47 TCGA-GN-A8LK-06 17 40951016 40951016 G A CNTD1 5'UTR 0.50 TCGA-GN-A8LK-06 17 41598776 41598776 C T DHX8 Missense_Mutation p.H1036Y 0.35 tolerated(0.09) benign(0.008) TCGA-GN-A8LK-06 17 42337822 42337822 G A SLC4A1 Silent p.I145I 0.52 TCGA-GN-A8LK-06 17 43907821 43907821 C T CRHR1 Silent p.F227F 0.50 TCGA-GN-A8LK-06 17 4391139 4391139 G A SPNS3 Missense_Mutation p.E497K 0.34 tolerated(0.06) possibly_damaging(0.864) TCGA-GN-A8LK-06 17 44049269 44049269 G A MAPT Missense_Mutation p.G60S 0.42 tolerated(0.53) possibly_damaging(0.659) TCGA-GN-A8LK-06 17 4461992 4461992 G A GGT6 Missense_Mutation p.S267L 0.80 deleterious(0.03) benign(0.321) TCGA-GN-A8LK-06 17 44846062 44846062 C T WNT3 Missense_Mutation p.G231D 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 45286711 45286711 C T MYL4 Intron 0.48 TCGA-GN-A8LK-06 17 4534815 4534815 G A ALOX15 3'UTR 0.63 TCGA-GN-A8LK-06 17 45534075 45534075 G A MRPL45P2 RNA 0.49 TCGA-GN-A8LK-06 17 4575789 4575789 G A PELP1 Missense_Mutation p.P833S 0.88 unknown(0) TCGA-GN-A8LK-06 17 45993905 45993905 C - SP2 Frame_Shift_Del p.Q157Rfs*45 0.31 TCGA-GN-A8LK-06 17 46148742 46148742 C T CBX1 3'UTR 0.57 TCGA-GN-A8LK-06 17 46153498 46153498 G A CBX1 Silent p.P61P 0.44 TCGA-GN-A8LK-06 17 46198683 46198683 C T SNX11 Missense_Mutation p.P209L 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A8LK-06 17 46257595 46257595 G C SKAP1 Missense_Mutation p.T216S 0.79 tolerated(0.27) benign(0.059) TCGA-GN-A8LK-06 17 4637924 4637924 C T CXCL16 Missense_Mutation p.V267M 0.45 deleterious(0.03) probably_damaging(0.934) TCGA-GN-A8LK-06 17 47004417 47004417 A T UBE2Z Missense_Mutation p.H329L 0.49 tolerated(0.05) benign(0) TCGA-GN-A8LK-06 17 47123282 47123282 G A IGF2BP1 Missense_Mutation p.E476K 0.45 deleterious(0.04) benign(0.34) TCGA-GN-A8LK-06 17 48212949 48212949 C T PPP1R9B Missense_Mutation p.R788K 0.33 deleterious(0.01) benign(0.066) TCGA-GN-A8LK-06 17 48605575 48605575 C T MYCBPAP Missense_Mutation p.S827F 0.32 deleterious(0) benign(0.198) TCGA-GN-A8LK-06 17 48917971 48917971 G A WFIKKN2 Missense_Mutation p.G441E 0.45 tolerated(0.36) benign(0.439) TCGA-GN-A8LK-06 17 49731009 49731009 A G CA10 Missense_Mutation p.F185S 0.47 deleterious(0) possibly_damaging(0.892) TCGA-GN-A8LK-06 17 50008401 50008401 C T CA10 Missense_Mutation p.M76I 0.52 tolerated(0.22) benign(0.012) TCGA-GN-A8LK-06 17 5076226 5076226 G A USP6 Missense_Mutation p.D1392N 0.45 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-GN-A8LK-06 17 53345276 53345276 G A HLF Missense_Mutation p.E94K 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-GN-A8LK-06 17 5462769 5462769 C T NLRP1 Missense_Mutation p.G416E 0.36 tolerated(0.49) benign(0.004) TCGA-GN-A8LK-06 17 54912436 54912436 G A DGKE Missense_Mutation p.V94M 0.47 deleterious(0.02) possibly_damaging(0.79) TCGA-GN-A8LK-06 17 56233111 56233111 G A OR4D1 Missense_Mutation p.M199I 0.45 tolerated(0.12) benign(0.03) TCGA-GN-A8LK-06 17 56247807 56247807 C T OR4D2 Missense_Mutation p.P264L 0.48 tolerated(0.07) benign(0.033) TCGA-GN-A8LK-06 17 56345273 56345273 C T LPO Missense_Mutation p.A686V 0.35 tolerated(0.39) benign(0.021) TCGA-GN-A8LK-06 17 56345322 56345322 G A LPO Silent p.L702L 0.58 TCGA-GN-A8LK-06 17 56355441 56355441 C T MPO Silent p.P317P 0.41 TCGA-GN-A8LK-06 17 56386619 56386619 C T BZRAP1 Silent p.E1338E 0.46 TCGA-GN-A8LK-06 17 56437541 56437541 C T RNF43 Silent p.R307R 0.43 TCGA-GN-A8LK-06 17 56649305 56649305 G A TEX14 Missense_Mutation p.P1278S 0.47 tolerated(0.41) benign(0.004) TCGA-GN-A8LK-06 17 57287389 57287389 G A SMG8 5'UTR 0.43 TCGA-GN-A8LK-06 17 58091673 58091673 C T TBC1D3P1-DHX40P1 RNA 0.41 TCGA-GN-A8LK-06 17 58504109 58504109 G A C17orf64 Silent p.S120S 0.61 TCGA-GN-A8LK-06 17 59557602 59557602 G A TBX4 Missense_Mutation p.E315K 0.47 deleterious(0.04) benign(0.074) TCGA-GN-A8LK-06 17 60005377 60005377 G A INTS2 5'UTR 0.47 TCGA-GN-A8LK-06 17 60112893 60112893 G A MED13 Missense_Mutation p.H183Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 17 60112894 60112894 T G MED13 Missense_Mutation p.Q182H 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 17 61762908 61762908 C T MAP3K3 Missense_Mutation p.S254F 0.47 deleterious(0) benign(0.132) TCGA-GN-A8LK-06 17 61886271 61886271 C T DDX42 Missense_Mutation p.A372V 0.45 deleterious(0.03) probably_damaging(0.993) TCGA-GN-A8LK-06 17 62132152 62132152 G A ERN1 Missense_Mutation p.S570F 0.43 deleterious(0.04) benign(0.007) TCGA-GN-A8LK-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.49 deleterious(0) possibly_damaging(0.817) TCGA-GN-A8LK-06 17 62859133 62859133 G A LRRC37A3 Silent p.I1019I 0.52 TCGA-GN-A8LK-06 17 6380522 6380522 G A PITPNM3 Silent p.V304V 0.38 TCGA-GN-A8LK-06 17 64213049 64213049 C T APOH Missense_Mutation p.G214E 0.51 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 64880957 64880957 C T CACNG5 Intron 0.52 TCGA-GN-A8LK-06 17 66339866 66339866 C T ARSG Missense_Mutation p.L114F 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 6683542 6683542 C T FBXO39 Silent p.L119L 0.46 TCGA-GN-A8LK-06 17 67084310 67084310 G A ABCA6 Silent p.F1232F 0.46 TCGA-GN-A8LK-06 17 67178296 67178296 G A ABCA10 Missense_Mutation p.R923C 0.34 tolerated(0.19) benign(0.401) TCGA-GN-A8LK-06 17 68171516 68171516 C T KCNJ2 Silent p.D112D 0.43 TCGA-GN-A8LK-06 17 7100082 7100082 G A DLG4 Silent p.I402I 0.73 TCGA-GN-A8LK-06 17 7162253 7162253 T C ELP5 Intron 0.39 TCGA-GN-A8LK-06 17 72363843 72363843 G A GPR142 Missense_Mutation p.D67N 0.54 deleterious_low_confidence(0.04) benign(0.171) TCGA-GN-A8LK-06 17 72518811 72518811 C T CD300LB 3'UTR 0.40 TCGA-GN-A8LK-06 17 72521928 72521928 C T CD300LB Missense_Mutation p.G147E 0.50 deleterious(0) possibly_damaging(0.832) TCGA-GN-A8LK-06 17 72846469 72846469 C T GRIN2C Missense_Mutation p.G456E 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 72846775 72846775 G A GRIN2C Silent p.I415I 0.44 TCGA-GN-A8LK-06 17 72851246 72851246 C T GRIN2C Intron 0.31 TCGA-GN-A8LK-06 17 72874426 72874426 G A FADS6 3'UTR 0.44 TCGA-GN-A8LK-06 17 72943024 72943024 C T OTOP3 Silent p.F358F 0.52 TCGA-GN-A8LK-06 17 73000091 73000091 C T CDR2L Silent p.F440F 0.50 TCGA-GN-A8LK-06 17 73239173 73239173 G A GGA3 Missense_Mutation p.P167S 0.38 tolerated(0.16) possibly_damaging(0.572) TCGA-GN-A8LK-06 17 7329944 7329944 C T C17orf74 Silent p.L212L 0.59 TCGA-GN-A8LK-06 17 7330124 7330124 G A C17orf74 Missense_Mutation p.E272K 0.41 deleterious(0) possibly_damaging(0.801) TCGA-GN-A8LK-06 17 73492448 73492448 G A KIAA0195 Missense_Mutation p.D1047N 0.41 deleterious(0.03) benign(0.154) TCGA-GN-A8LK-06 17 7369931 7369931 G A ZBTB4 Missense_Mutation p.P64S 0.50 unknown(0) TCGA-GN-A8LK-06 17 73753047 73753047 G A ITGB4 Missense_Mutation p.D1693N 0.35 tolerated(0.36) benign(0.084) TCGA-GN-A8LK-06 17 73813549 73813549 C T UNK Missense_Mutation p.P416L 0.47 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 17 73909793 73909793 G A FBF1 Silent p.S1064S 0.23 TCGA-GN-A8LK-06 17 73909794 73909794 G A FBF1 Missense_Mutation p.S1064F 0.23 tolerated(0.15) benign(0.077) TCGA-GN-A8LK-06 17 74270321 74270321 C T QRICH2 Missense_Mutation p.R1663K 0.53 tolerated_low_confidence(0.27) benign(0.158) TCGA-GN-A8LK-06 17 74273317 74273317 G A QRICH2 Missense_Mutation p.P1565L 0.56 deleterious(0) probably_damaging(0.984) TCGA-GN-A8LK-06 17 7460198 7460198 G T TNFSF12 Silent p.G159G 0.52 TCGA-GN-A8LK-06 17 7460199 7460199 C A TNFSF12 Missense_Mutation p.L160I 0.52 deleterious(0.01) possibly_damaging(0.849) TCGA-GN-A8LK-06 17 74623628 74623628 G A ST6GALNAC1 Missense_Mutation p.S290L 0.51 probably_damaging(0.992) TCGA-GN-A8LK-06 17 74878351 74878351 C T MGAT5B Silent p.A111A 0.45 TCGA-GN-A8LK-06 17 7579716 7579716 G A TP53 Missense_Mutation p.P27L 0.51 tolerated(0.09) benign(0.139) TCGA-GN-A8LK-06 17 7612500 7612500 A G EFNB3 Missense_Mutation p.N210S 0.43 tolerated(0.47) benign(0.164) TCGA-GN-A8LK-06 17 76129546 76129546 C T TMC8 Silent p.S197S 0.51 TCGA-GN-A8LK-06 17 76472801 76472801 G A DNAH17 Silent p.S2655S 0.55 TCGA-GN-A8LK-06 17 7664199 7664199 G C DNAH2 Missense_Mutation p.R976P 0.45 probably_damaging(0.987) TCGA-GN-A8LK-06 17 7751541 7751541 C T KDM6B Silent p.P645P 0.47 TCGA-GN-A8LK-06 17 77768900 77768900 G A CBX8 Missense_Mutation p.P235L 0.62 deleterious(0.01) benign(0.007) TCGA-GN-A8LK-06 17 77768901 77768901 G A CBX8 Missense_Mutation p.P235S 0.59 tolerated(0.32) benign(0) TCGA-GN-A8LK-06 17 7797534 7797534 C T CHD3 Silent p.V401V 0.47 TCGA-GN-A8LK-06 17 78084763 78084763 C T GAA Silent p.F525F 0.49 TCGA-GN-A8LK-06 17 78165160 78165160 C T CARD14 Silent p.S376S 0.42 TCGA-GN-A8LK-06 17 78247197 78247197 C T RNF213 Silent p.V85V 0.48 TCGA-GN-A8LK-06 17 78265545 78265545 T A RNF213 Missense_Mutation p.F464I 0.47 benign(0.051) TCGA-GN-A8LK-06 17 78268607 78268607 G A RNF213 Silent p.K520K 0.44 TCGA-GN-A8LK-06 17 79414562 79414562 C T RP11-1055B8.7 Missense_Mutation p.P1222S 0.67 benign(0.23) TCGA-GN-A8LK-06 17 7948184 7948184 C T ALOX15B Silent p.F238F 0.34 TCGA-GN-A8LK-06 17 79993790 79993790 G A DCXR 3'UTR 0.59 TCGA-GN-A8LK-06 17 8018294 8018294 G A ALOXE3 Silent p.A304A 0.49 TCGA-GN-A8LK-06 17 80401827 80401827 G A C17orf62 3'UTR 0.48 TCGA-GN-A8LK-06 17 8167548 8167548 C T PFAS Missense_Mutation p.R604W 0.46 deleterious(0.01) possibly_damaging(0.676) TCGA-GN-A8LK-06 17 8215950 8215950 G A ARHGEF15 Missense_Mutation p.G198D 0.45 deleterious_low_confidence(0) benign(0.185) TCGA-GN-A8LK-06 17 8248693 8248693 C T ODF4 Missense_Mutation p.P163S 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-GN-A8LK-06 17 8638734 8638734 G A CCDC42 Missense_Mutation p.R230C 0.46 deleterious(0) possibly_damaging(0.482) TCGA-GN-A8LK-06 17 8732201 8732201 C T PIK3R6 Silent p.R332R 0.31 TCGA-GN-A8LK-06 17 9764461 9764461 C T GLP2R Missense_Mutation p.P311S 0.37 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 17 9764490 9764490 C T GLP2R Silent p.F320F 0.54 TCGA-GN-A8LK-06 18 10546372 10546372 G A NAPG Missense_Mutation p.E186K 0.78 tolerated(0.1) benign(0.092) TCGA-GN-A8LK-06 18 19995558 19995558 G A CTAGE1 Silent p.F739F 0.89 TCGA-GN-A8LK-06 18 20889649 20889649 C T TMEM241 Silent p.T275T 0.90 TCGA-GN-A8LK-06 18 21053517 21053517 G A RIOK3 Missense_Mutation p.D314N 0.95 tolerated(0.09) possibly_damaging(0.483) TCGA-GN-A8LK-06 18 22040755 22040755 T A HRH4 Missense_Mutation p.F21L 0.96 tolerated(1) benign(0) TCGA-GN-A8LK-06 18 2891736 2891736 G A EMILIN2 Missense_Mutation p.M537I 1.00 tolerated(0.48) benign(0.001) TCGA-GN-A8LK-06 18 28934819 28934819 G A DSG1 Missense_Mutation p.R887Q 0.91 tolerated(0.11) possibly_damaging(0.836) TCGA-GN-A8LK-06 18 2909816 2909816 C T EMILIN2 Silent p.T941T 0.91 TCGA-GN-A8LK-06 18 30350032 30350032 G C KLHL14 Missense_Mutation p.Q175E 0.92 tolerated(1) benign(0.028) TCGA-GN-A8LK-06 18 31326267 31326267 G A ASXL3 Missense_Mutation p.G2152E 0.85 probably_damaging(0.999) TCGA-GN-A8LK-06 18 32954103 32954103 G A ZNF396 Missense_Mutation p.R52C 0.97 deleterious(0.01) benign(0) TCGA-GN-A8LK-06 18 3879502 3879502 C T DLGAP1 Silent p.A189A 0.88 TCGA-GN-A8LK-06 18 43532380 43532380 T A EPG5 Missense_Mutation p.H413L 0.98 tolerated(0.51) benign(0.025) TCGA-GN-A8LK-06 18 44260006 44260006 C T ST8SIA5 Silent p.%3D 0.97 TCGA-GN-A8LK-06 18 44555154 44555154 C T TCEB3C Missense_Mutation p.D354N 0.26 deleterious(0) possibly_damaging(0.736) TCGA-GN-A8LK-06 18 47010062 47010062 G A RPL17-C18orf32 Missense_Mutation p.S196F 0.96 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-GN-A8LK-06 18 47769313 47769313 C T CCDC11 Silent p.V390V 0.95 TCGA-GN-A8LK-06 18 54815063 54815063 G A BOD1L2 3'UTR 0.85 TCGA-GN-A8LK-06 18 56204265 56204265 G A ALPK2 Missense_Mutation p.P1052S 0.94 tolerated(0.1) possibly_damaging(0.884) TCGA-GN-A8LK-06 18 56204595 56204595 C T ALPK2 Missense_Mutation p.E942K 0.85 tolerated(0.1) benign(0.343) TCGA-GN-A8LK-06 18 61306888 61306888 C T SERPINB4 Missense_Mutation p.E198K 0.97 tolerated(0.17) benign(0.072) TCGA-GN-A8LK-06 18 61328335 61328335 C T SERPINB3 Missense_Mutation p.G39E 0.90 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LK-06 18 61328386 61328386 G A SERPINB3 Missense_Mutation p.S22L 0.94 tolerated(0.13) benign(0.07) TCGA-GN-A8LK-06 18 72201801 72201801 G A CNDP1 5'UTR 0.90 TCGA-GN-A8LK-06 18 72914062 72914062 G A ZADH2 Missense_Mutation p.P148L 0.96 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LK-06 18 73130782 73130782 C T RP11-321M21.3 Missense_Mutation p.P59L 0.81 unknown(0) TCGA-GN-A8LK-06 18 73130783 73130783 C T SMIM21 Missense_Mutation p.G73E 0.81 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-GN-A8LK-06 18 745976 745976 G A YES1 Silent p.F182F 1.00 TCGA-GN-A8LK-06 19 10085021 10085021 C T COL5A3 Missense_Mutation p.G1136R 0.57 probably_damaging(1) TCGA-GN-A8LK-06 19 10085063 10085063 G A COL5A3 Missense_Mutation p.R1122C 0.34 probably_damaging(0.986) TCGA-GN-A8LK-06 19 10218184 10218184 C T PPAN Missense_Mutation p.R65C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 19 10369180 10369180 C T MRPL4 Missense_Mutation p.S215F 0.44 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 19 10397668 10397668 C T ICAM4 5'UTR 0.55 TCGA-GN-A8LK-06 19 10670507 10670507 G A KRI1 Silent p.F308F 0.43 TCGA-GN-A8LK-06 19 10671055 10671055 G A KRI1 Missense_Mutation p.L251F 0.35 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 19 10671056 10671056 G A KRI1 Silent p.I250I 0.35 TCGA-GN-A8LK-06 19 10697896 10697896 C T AP1M2 Silent p.S4S 0.40 TCGA-GN-A8LK-06 19 10941706 10941706 C T DNM2 Missense_Mutation p.P866S 0.33 tolerated_low_confidence(0.08) unknown(0) TCGA-GN-A8LK-06 19 1095370 1095370 G A POLR2E 5'UTR 0.26 TCGA-GN-A8LK-06 19 1116854 1116854 G A SBNO2 Silent p.H592H 0.67 TCGA-GN-A8LK-06 19 11943927 11943927 C T ZNF440 3'UTR 0.47 TCGA-GN-A8LK-06 19 12090793 12090793 C T ZNF763 3'UTR 0.42 TCGA-GN-A8LK-06 19 12460462 12460462 G A ZNF442 3'UTR 0.48 TCGA-GN-A8LK-06 19 12491702 12491702 G A CTD-3105H18.14 3'UTR 0.47 TCGA-GN-A8LK-06 19 12541366 12541366 G A ZNF443 Silent p.A540A 0.40 TCGA-GN-A8LK-06 19 1270161 1270161 G T CIRBP Intron 0.65 TCGA-GN-A8LK-06 19 12800397 12800397 G A FBXW9 Silent p.S398S 0.35 TCGA-GN-A8LK-06 19 14104668 14104668 G A RFX1 5'UTR 0.43 TCGA-GN-A8LK-06 19 14208474 14208474 C T PRKACA Missense_Mutation p.G187S 0.51 deleterious(0.01) probably_damaging(0.975) TCGA-GN-A8LK-06 19 14578530 14578530 C T PKN1 Silent p.S609S 0.44 TCGA-GN-A8LK-06 19 15164362 15164362 G A CASP14 Missense_Mutation p.E33K 0.43 tolerated(0.24) benign(0.062) TCGA-GN-A8LK-06 19 15760933 15760933 C T CYP4F3 Silent p.F286F 0.52 TCGA-GN-A8LK-06 19 15852868 15852868 C T OR10H3 Silent p.F222F 0.45 TCGA-GN-A8LK-06 19 16025449 16025449 C T CYP4F11 Missense_Mutation p.G426E 0.38 deleterious(0.01) probably_damaging(0.939) TCGA-GN-A8LK-06 19 16060420 16060420 G A OR10H4 Silent p.V201V 0.45 TCGA-GN-A8LK-06 19 1615661 1615661 G A TCF3 Intron 0.54 TCGA-GN-A8LK-06 19 16238264 16238264 C T RAB8A Silent p.V114V 0.53 TCGA-GN-A8LK-06 19 16344396 16344396 C T AP1M1 Silent p.F392F 0.79 TCGA-GN-A8LK-06 19 17062869 17062869 G A CPAMD8 Silent p.F853F 0.50 TCGA-GN-A8LK-06 19 17104394 17104394 C T CPAMD8 Silent p.V413V 0.38 TCGA-GN-A8LK-06 19 17186280 17186280 G A HAUS8 5'UTR 0.40 TCGA-GN-A8LK-06 19 17394711 17394711 A C ANKLE1 Missense_Mutation p.I380L 0.43 tolerated(0.07) benign(0.048) TCGA-GN-A8LK-06 19 17452034 17452034 C T GTPBP3 Missense_Mutation p.P418S 0.61 tolerated(0.82) benign(0.004) TCGA-GN-A8LK-06 19 18100569 18100569 C T KCNN1 Silent p.I405I 0.48 TCGA-GN-A8LK-06 19 18234448 18234448 C T MAST3 Missense_Mutation p.R177W 0.14 deleterious(0) probably_damaging(0.978) TCGA-GN-A8LK-06 19 18652634 18652634 C G FKBP8 Silent p.L49L 0.60 TCGA-GN-A8LK-06 19 18684158 18684158 G A UBA52 Silent p.E16E 0.39 TCGA-GN-A8LK-06 19 18888289 18888289 G A CRTC1 3'UTR 0.41 TCGA-GN-A8LK-06 19 18961603 18961603 C T UPF1 Missense_Mutation p.P246S 0.33 deleterious(0) probably_damaging(0.963) TCGA-GN-A8LK-06 19 19427370 19427370 G A SUGP1 Missense_Mutation p.P23S 0.59 tolerated_low_confidence(0.43) benign(0.063) TCGA-GN-A8LK-06 19 19427371 19427371 G A SUGP1 Silent p.P22P 0.60 TCGA-GN-A8LK-06 19 19655654 19655654 C T CILP2 Missense_Mutation p.P767L 0.56 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 19 19735160 19735160 C T LPAR2 Missense_Mutation p.E321K 0.49 tolerated(0.87) benign(0) TCGA-GN-A8LK-06 19 19767681 19767681 G A ATP13A1 Silent p.I317I 0.50 TCGA-GN-A8LK-06 19 20236289 20236289 G A CTC-260E6.2 RNA 0.28 TCGA-GN-A8LK-06 19 20727524 20727524 G A ZNF737 Silent p.I495I 0.35 TCGA-GN-A8LK-06 19 20806965 20806965 G A ZNF626 3'UTR 0.44 TCGA-GN-A8LK-06 19 22155142 22155142 A G ZNF208 Silent p.F898F 0.48 TCGA-GN-A8LK-06 19 22270934 22270934 G A ZNF257 Missense_Mutation p.G128R 0.45 tolerated(0.42) benign(0.013) TCGA-GN-A8LK-06 19 22574825 22574825 T A ZNF98 Missense_Mutation p.K404N 0.41 deleterious(0.01) benign(0.012) TCGA-GN-A8LK-06 19 22785632 22785632 G A AC011467.1 3'Flank 0.62 TCGA-GN-A8LK-06 19 22941113 22941113 C T ZNF99 Missense_Mutation p.G533E 0.42 deleterious(0.03) possibly_damaging(0.531) TCGA-GN-A8LK-06 19 23328979 23328979 A C ZNF730 Missense_Mutation p.N378T 0.50 tolerated(0.3) benign(0.052) TCGA-GN-A8LK-06 19 24010173 24010173 C T RPSAP58 Silent p.N70N 0.38 TCGA-GN-A8LK-06 19 2717685 2717685 G A DIRAS1 Silent p.I40I 0.46 TCGA-GN-A8LK-06 19 2934589 2934589 G A ZNF77 Missense_Mutation p.P179L 0.40 tolerated(0.28) possibly_damaging(0.56) TCGA-GN-A8LK-06 19 3019644 3019644 G A TLE2 Intron 0.38 TCGA-GN-A8LK-06 19 30936560 30936560 G A ZNF536 Silent p.E697E 0.42 TCGA-GN-A8LK-06 19 3179114 3179114 C T S1PR4 Silent p.A108A 0.51 TCGA-GN-A8LK-06 19 32844846 32844846 G A ZNF507 Silent p.E370E 0.51 TCGA-GN-A8LK-06 19 33703780 33703780 C T SLC7A10 Missense_Mutation p.R162Q 0.49 deleterious(0) possibly_damaging(0.686) TCGA-GN-A8LK-06 19 3452500 3452500 C A NFIC Missense_Mutation p.P369T 0.47 tolerated(0.13) benign(0.094) TCGA-GN-A8LK-06 19 35793494 35793494 G C MAG Missense_Mutation p.E372Q 0.41 tolerated(0.16) possibly_damaging(0.46) TCGA-GN-A8LK-06 19 36051751 36051751 G A ATP4A Silent p.I168I 0.47 TCGA-GN-A8LK-06 19 36213370 36213370 C T KMT2B Missense_Mutation p.P856L 0.41 benign(0.212) TCGA-GN-A8LK-06 19 36236335 36236335 C T PSENEN 5'UTR 0.48 TCGA-GN-A8LK-06 19 36243074 36243074 C T LIN37 Intron 0.57 TCGA-GN-A8LK-06 19 36273694 36273694 C T ARHGAP33 Silent p.A448A 0.43 TCGA-GN-A8LK-06 19 36322013 36322013 G A NPHS1 Silent p.S1141S 0.47 TCGA-GN-A8LK-06 19 36398656 36398656 G A TYROBP Missense_Mutation p.P24S 0.49 tolerated(0.64) benign(0.055) TCGA-GN-A8LK-06 19 3656418 3656418 G A PIP5K1C Silent p.L202L 0.38 TCGA-GN-A8LK-06 19 36727974 36727974 C T ZNF146 Missense_Mutation p.P211L 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 19 36853036 36853036 G A ZFP14 Silent p.N38N 0.42 TCGA-GN-A8LK-06 19 36853037 36853037 T A ZFP14 Missense_Mutation p.N38I 0.43 deleterious(0) benign(0.17) TCGA-GN-A8LK-06 19 36940473 36940473 A G ZNF566 Silent p.H222H 0.46 TCGA-GN-A8LK-06 19 37975220 37975220 C T ZNF570 Silent p.S232S 0.44 TCGA-GN-A8LK-06 19 38964055 38964055 C T RYR1 Silent p.C1268C 0.49 TCGA-GN-A8LK-06 19 38985047 38985047 C T RYR1 Silent p.F2110F 0.47 TCGA-GN-A8LK-06 19 38993557 38993557 C T RYR1 Missense_Mutation p.R2625C 0.27 benign(0.255) TCGA-GN-A8LK-06 19 39327309 39327309 A G HNRNPL 3'UTR 0.49 TCGA-GN-A8LK-06 19 39591437 39591437 C T PAPL Missense_Mutation p.H251Y 0.51 tolerated(0.45) benign(0.002) TCGA-GN-A8LK-06 19 39860708 39860708 C T SAMD4B Missense_Mutation p.H204Y 0.42 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 19 39866306 39866306 C T SAMD4B Silent p.I228I 0.44 TCGA-GN-A8LK-06 19 39960881 39960881 C T SUPT5H Silent p.F499F 0.52 TCGA-GN-A8LK-06 19 40197951 40197951 G A LGALS14 Missense_Mutation p.E105K 0.42 tolerated(1) benign(0.348) TCGA-GN-A8LK-06 19 40368604 40368604 G A FCGBP Silent p.A4248A 0.24 TCGA-GN-A8LK-06 19 40541085 40541085 C T ZNF780B Missense_Mutation p.E561K 0.45 deleterious(0.05) benign(0.014) TCGA-GN-A8LK-06 19 40996111 40996111 C T SPTBN4 Missense_Mutation p.R151W 0.41 deleterious(0) probably_damaging(0.981) TCGA-GN-A8LK-06 19 41198877 41198877 G A ADCK4 Silent p.F425F 0.69 TCGA-GN-A8LK-06 19 41206313 41206313 C A ADCK4 Missense_Mutation p.V313F 0.40 tolerated(0.08) benign(0.031) TCGA-GN-A8LK-06 19 41622215 41622215 G A CYP2F1 Missense_Mutation p.G41E 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 19 41828715 41828715 C T CCDC97 3'UTR 0.50 TCGA-GN-A8LK-06 19 41932181 41932181 C T B3GNT8 Missense_Mutation p.R168K 0.55 deleterious(0) probably_damaging(0.992) TCGA-GN-A8LK-06 19 42125556 42125556 G A CEACAM4 3'UTR 0.41 TCGA-GN-A8LK-06 19 42187870 42187870 C T CEACAM7 Silent p.Q184Q 0.47 TCGA-GN-A8LK-06 19 42301634 42301634 C A CEACAM3 Missense_Mutation p.Q60K 0.43 tolerated(0.24) possibly_damaging(0.596) TCGA-GN-A8LK-06 19 42342184 42342184 C T LYPD4 Silent p.L121L 0.41 TCGA-GN-A8LK-06 19 42463412 42463412 G A RABAC1 Silent p.A11A 0.50 TCGA-GN-A8LK-06 19 42463413 42463413 G A RABAC1 Missense_Mutation p.A11V 0.49 tolerated(0.21) benign(0.001) TCGA-GN-A8LK-06 19 42486153 42486153 T C ATP1A3 Missense_Mutation p.K380E 0.46 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 19 42729826 42729826 C T ZNF526 Missense_Mutation p.P424L 0.60 tolerated(0.15) benign(0.002) TCGA-GN-A8LK-06 19 42793112 42793112 C T CIC Missense_Mutation p.S335F 0.43 benign(0.038) TCGA-GN-A8LK-06 19 4290675 4290675 A T SHD 3'UTR 0.52 TCGA-GN-A8LK-06 19 43234066 43234066 G A PSG3 Silent p.P284P 0.42 TCGA-GN-A8LK-06 19 43373131 43373131 C T PSG1 Silent p.K255K 0.47 TCGA-GN-A8LK-06 19 43529065 43529065 C T PSG11 Missense_Mutation p.G70R 0.42 deleterious(0.03) possibly_damaging(0.899) TCGA-GN-A8LK-06 19 4357367 4357367 C T MPND Missense_Mutation p.R372W 0.47 deleterious(0.03) benign(0.013) TCGA-GN-A8LK-06 19 43674281 43674281 C T PSG5 Missense_Mutation p.G325E 0.50 tolerated(0.64) benign(0.005) TCGA-GN-A8LK-06 19 43979681 43979681 G A PHLDB3 Silent p.L602L 0.47 TCGA-GN-A8LK-06 19 44500452 44500452 C T ZNF155 Missense_Mutation p.S159F 0.46 tolerated(0.53) benign(0.017) TCGA-GN-A8LK-06 19 44610893 44610893 C T ZNF224 Missense_Mutation p.H194Y 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A8LK-06 19 44777693 44777693 G A ZNF233 Missense_Mutation p.G294S 0.55 tolerated(0.1) benign(0.08) TCGA-GN-A8LK-06 19 44934127 44934127 C T ZNF229 Missense_Mutation p.D277N 0.51 tolerated(0.53) benign(0.001) TCGA-GN-A8LK-06 19 44934488 44934488 G A ZNF229 Silent p.S156S 0.45 TCGA-GN-A8LK-06 19 4511533 4511533 G A PLIN4 Silent p.A799A 0.28 TCGA-GN-A8LK-06 19 4511731 4511731 G A PLIN4 Silent p.A733A 0.15 TCGA-GN-A8LK-06 19 46056638 46056638 G A OPA3 Intron 0.50 TCGA-GN-A8LK-06 19 46663725 46663725 G A IGFL2 Missense_Mutation p.A36T 0.45 tolerated(0.62) possibly_damaging(0.526) TCGA-GN-A8LK-06 19 47278676 47278676 C T SLC1A5 3'UTR 0.36 TCGA-GN-A8LK-06 19 47548454 47548454 G A NPAS1 Missense_Mutation p.E440K 0.38 tolerated(0.24) benign(0.003) TCGA-GN-A8LK-06 19 47876875 47876875 G A DHX34 Missense_Mutation p.R661K 0.53 tolerated(0.87) benign(0.001) TCGA-GN-A8LK-06 19 48183957 48183957 C T GLTSCR1 Silent p.I510I 0.45 TCGA-GN-A8LK-06 19 48385346 48385346 C T SULT2A1 Missense_Mutation p.G156E 0.43 deleterious(0.02) probably_damaging(0.988) TCGA-GN-A8LK-06 19 49006208 49006208 C T LMTK3 Silent p.V230V 0.32 TCGA-GN-A8LK-06 19 49362148 49362148 G A PLEKHA4 Missense_Mutation p.P314L 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-GN-A8LK-06 19 49933740 49933740 G A SLC17A7 3'UTR 0.56 TCGA-GN-A8LK-06 19 49949890 49949890 T G PIH1D1 Missense_Mutation p.Q250P 0.39 tolerated(1) benign(0.01) TCGA-GN-A8LK-06 19 50156040 50156040 C T SCAF1 Silent p.P798P 0.47 TCGA-GN-A8LK-06 19 50169096 50169096 G A BCL2L12 Missense_Mutation p.G6R 0.48 deleterious_low_confidence(0.03) benign(0.105) TCGA-GN-A8LK-06 19 50169097 50169097 G A BCL2L12 Missense_Mutation p.G6E 0.49 tolerated_low_confidence(0.07) benign(0.066) TCGA-GN-A8LK-06 19 50173480 50173480 C T BCL2L12 Missense_Mutation p.S230L 0.50 deleterious(0.04) benign(0.014) TCGA-GN-A8LK-06 19 50249810 50249810 C T TSKS Nonsense_Mutation p.W303* 0.53 TCGA-GN-A8LK-06 19 50796938 50796938 C T MYH14 Silent p.L1821L 0.39 TCGA-GN-A8LK-06 19 51376761 51376761 C T KLK2 Missense_Mutation p.S11F 0.22 tolerated(0.14) benign(0.111) TCGA-GN-A8LK-06 19 51525762 51525762 G A KLK11 3'UTR 0.41 TCGA-GN-A8LK-06 19 51527431 51527431 G A KLK11 Silent p.I143I 0.54 TCGA-GN-A8LK-06 19 51532708 51532708 A T KLK12 Missense_Mutation p.D199E 0.44 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 19 51742944 51742944 G A CD33 3'UTR 0.48 TCGA-GN-A8LK-06 19 51771841 51771841 G A SIGLECL1 Missense_Mutation p.R195Q 0.37 tolerated_low_confidence(0.24) benign(0.005) TCGA-GN-A8LK-06 19 51828706 51828706 G A IGLON5 Nonsense_Mutation p.W166* 0.45 TCGA-GN-A8LK-06 19 51960891 51960891 G A SIGLEC8 Missense_Mutation p.P186L 0.45 deleterious(0.03) probably_damaging(0.972) TCGA-GN-A8LK-06 19 52002861 52002861 C T SIGLEC12 Silent p.T306T 0.42 TCGA-GN-A8LK-06 19 52130500 52130500 C T SIGLEC5 Silent p.G428G 0.44 TCGA-GN-A8LK-06 19 52146560 52146560 C T SIGLEC14 3'UTR 0.45 TCGA-GN-A8LK-06 19 52327614 52327614 C T FPR3 Missense_Mutation p.H205Y 0.49 deleterious(0) benign(0.039) TCGA-GN-A8LK-06 19 52941918 52941918 A T ZNF534 Missense_Mutation p.K415I 0.52 tolerated(0.09) benign(0.003) TCGA-GN-A8LK-06 19 53014010 53014010 G A ZNF578 Missense_Mutation p.E126K 0.42 tolerated(0.61) probably_damaging(0.991) TCGA-GN-A8LK-06 19 53058345 53058345 C T ZNF808 Missense_Mutation p.R726C 0.49 tolerated(0.05) probably_damaging(0.912) TCGA-GN-A8LK-06 19 53117557 53117557 A - ZNF83 Frame_Shift_Del p.N87Kfs*27 0.28 TCGA-GN-A8LK-06 19 53383908 53383908 G A ZNF320 Missense_Mutation p.P491S 0.41 deleterious(0) benign(0.119) TCGA-GN-A8LK-06 19 53741721 53741721 C T ZNF677 Missense_Mutation p.E87K 0.47 tolerated(0.14) benign(0.002) TCGA-GN-A8LK-06 19 53762799 53762799 G A VN1R2 Missense_Mutation p.D391N 0.44 deleterious(0.03) benign(0) TCGA-GN-A8LK-06 19 53793663 53793663 A C BIRC8 5'UTR 0.40 TCGA-GN-A8LK-06 19 54074933 54074933 G A ZNF331 Missense_Mutation p.D29N 0.48 tolerated(0.28) probably_damaging(0.989) TCGA-GN-A8LK-06 19 54080270 54080270 C T ZNF331 Silent p.I152I 0.44 TCGA-GN-A8LK-06 19 54200848 54200848 C T MIR525 RNA 0.96 TCGA-GN-A8LK-06 19 54301522 54301522 G A NLRP12 Missense_Mutation p.P968S 0.44 deleterious(0.02) benign(0.081) TCGA-GN-A8LK-06 19 54544251 54544251 G A VSTM1 Silent p.P225P 0.43 TCGA-GN-A8LK-06 19 54783352 54783352 G A LILRB2 Missense_Mutation p.S169F 0.43 deleterious(0) possibly_damaging(0.621) TCGA-GN-A8LK-06 19 54849910 54849910 C T LILRA4 Missense_Mutation p.V38M 0.52 tolerated(0.05) benign(0.43) TCGA-GN-A8LK-06 19 55020266 55020266 C T LAIR2 Missense_Mutation p.S129F 0.53 deleterious(0.01) possibly_damaging(0.646) TCGA-GN-A8LK-06 19 55107247 55107247 C T LILRA1 Missense_Mutation p.P269S 0.47 tolerated(0.49) benign(0.262) TCGA-GN-A8LK-06 19 55526352 55526352 C T GP6 Missense_Mutation p.E321K 0.62 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-GN-A8LK-06 19 55815167 55815167 C T BRSK1 Missense_Mutation p.A420V 0.55 deleterious(0.02) possibly_damaging(0.483) TCGA-GN-A8LK-06 19 56244672 56244672 C T NLRP9 Nonsense_Mutation p.W175* 0.46 TCGA-GN-A8LK-06 19 56244673 56244673 C T NLRP9 Nonsense_Mutation p.W175* 0.46 TCGA-GN-A8LK-06 19 56369878 56369878 C T NLRP4 Silent p.S373S 0.54 TCGA-GN-A8LK-06 19 56423134 56423134 C G NLRP13 Missense_Mutation p.R683S 0.55 tolerated(0.21) benign(0.015) TCGA-GN-A8LK-06 19 56466062 56466062 G A NLRP8 Missense_Mutation p.G213E 0.49 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LK-06 19 56538627 56538627 C T NLRP5 Missense_Mutation p.S343F 0.40 tolerated(0.07) possibly_damaging(0.629) TCGA-GN-A8LK-06 19 56569607 56569607 T C NLRP5 Silent p.L1101L 0.49 TCGA-GN-A8LK-06 19 56694507 56694507 G A GALP Missense_Mutation p.G74E 0.57 deleterious(0.04) benign(0.106) TCGA-GN-A8LK-06 19 56702300 56702300 C T ZSCAN5B Silent p.P215P 0.48 TCGA-GN-A8LK-06 19 57088968 57088968 C T ZNF470 Missense_Mutation p.H391Y 0.46 deleterious(0) probably_damaging(0.99) TCGA-GN-A8LK-06 19 57286010 57286010 G A ZIM2 3'UTR 0.44 TCGA-GN-A8LK-06 19 57293374 57293374 C T ZIM2 Missense_Mutation p.R198K 0.49 tolerated(0.2) benign(0.306) TCGA-GN-A8LK-06 19 57326279 57326279 G A PEG3 Silent p.F1177F 0.48 TCGA-GN-A8LK-06 19 57647250 57647250 C T ZIM3 Missense_Mutation p.R152K 0.44 tolerated(1) benign(0.002) TCGA-GN-A8LK-06 19 57802729 57802729 C T ZNF460 Missense_Mutation p.H274Y 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 19 57889257 57889257 T A ZNF547 Missense_Mutation p.F305I 0.48 deleterious(0.01) possibly_damaging(0.564) TCGA-GN-A8LK-06 19 5867003 5867003 C T FUT5 Missense_Mutation p.G245E 0.39 tolerated(0.91) benign(0.011) TCGA-GN-A8LK-06 19 58962976 58962976 C T ZNF324B 5'UTR 0.48 TCGA-GN-A8LK-06 19 59010630 59010630 G A SLC27A5 Intron 0.38 TCGA-GN-A8LK-06 19 59010631 59010631 G A SLC27A5 Intron 0.38 TCGA-GN-A8LK-06 19 5931449 5931449 G A RANBP3 Missense_Mutation p.P220L 0.46 deleterious(0.03) benign(0.002) TCGA-GN-A8LK-06 19 6718167 6718167 G A C3 Missense_Mutation p.R148W 0.45 deleterious(0.01) probably_damaging(0.913) TCGA-GN-A8LK-06 19 6940148 6940148 C T EMR1 3'UTR 0.41 TCGA-GN-A8LK-06 19 7083164 7083164 A G ZNF557 Silent p.K234K 0.45 TCGA-GN-A8LK-06 19 7677221 7677221 C T CAMSAP3 Silent p.I641I 0.58 TCGA-GN-A8LK-06 19 7677238 7677238 G A CAMSAP3 Missense_Mutation p.R647Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 19 7705647 7705647 G A STXBP2 Missense_Mutation p.G93R 0.48 tolerated(0.43) benign(0.056) TCGA-GN-A8LK-06 19 7976345 7976345 C T MAP2K7 Missense_Mutation p.P321S 0.43 deleterious(0.01) possibly_damaging(0.789) TCGA-GN-A8LK-06 19 8152096 8152096 C G FBN3 Splice_Site p.X2207_splice 0.44 TCGA-GN-A8LK-06 19 848012 848012 C T PRTN3 3'UTR 0.54 TCGA-GN-A8LK-06 19 8550508 8550508 C T HNRNPM Missense_Mutation p.P399L 0.44 tolerated(0.76) benign(0.016) TCGA-GN-A8LK-06 19 8841444 8841444 C T OR2Z1 Silent p.F18F 0.58 TCGA-GN-A8LK-06 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.47 tolerated(0.13) benign(0.153) TCGA-GN-A8LK-06 19 8969340 8969340 G A MUC16 Missense_Mutation p.S14335F 0.47 probably_damaging(0.993) TCGA-GN-A8LK-06 19 9009697 9009724 AGGAGAGGAACAGCTGCTGTAGTGGGAG GGGAA MUC16 Splice_Site p.X13005_splice 0.29 TCGA-GN-A8LK-06 19 9048182 9048182 C T MUC16 Missense_Mutation p.G11150E 0.43 benign(0.007) TCGA-GN-A8LK-06 19 9060329 9060329 G A MUC16 Silent p.V9039V 0.49 TCGA-GN-A8LK-06 19 9062163 9062163 C T MUC16 Missense_Mutation p.S8428N 0.41 unknown(0) TCGA-GN-A8LK-06 19 9063032 9063032 C T MUC16 Missense_Mutation p.M8138I 0.45 unknown(0) TCGA-GN-A8LK-06 19 9064383 9064383 G A MUC16 Missense_Mutation p.S7688F 0.47 unknown(0) TCGA-GN-A8LK-06 19 9068415 9068415 G A MUC16 Missense_Mutation p.S6344F 0.45 unknown(0) TCGA-GN-A8LK-06 19 9074524 9074524 C T MUC16 Missense_Mutation p.G4308R 0.46 unknown(0) TCGA-GN-A8LK-06 19 9075567 9075567 G A MUC16 Missense_Mutation p.S3960F 0.41 unknown(0) TCGA-GN-A8LK-06 19 9082710 9082710 G A MUC16 Silent p.S3035S 0.47 TCGA-GN-A8LK-06 19 9082884 9082884 G A MUC16 Silent p.V2977V 0.42 TCGA-GN-A8LK-06 19 9084875 9084875 C T MUC16 Missense_Mutation p.G2314R 0.48 unknown(0) TCGA-GN-A8LK-06 19 9087346 9087346 G A MUC16 Missense_Mutation p.P1490L 0.43 unknown(0) TCGA-GN-A8LK-06 19 9090078 9090078 C T MUC16 Silent p.G579G 0.40 TCGA-GN-A8LK-06 19 9090300 9090300 G A MUC16 Silent p.I505I 0.43 TCGA-GN-A8LK-06 19 9090523 9090523 C T MUC16 Missense_Mutation p.G431E 0.40 unknown(0) TCGA-GN-A8LK-06 19 9204289 9204289 C T OR1M1 Silent p.F123F 0.47 TCGA-GN-A8LK-06 19 9362376 9362376 C T OR7E24 Silent p.F219F 0.59 TCGA-GN-A8LK-06 19 9362411 9362411 G A OR7E24 Missense_Mutation p.G231E 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A8LK-06 19 9488935 9488935 C T ZNF177 5'UTR 0.35 TCGA-GN-A8LK-06 1 100620749 100620749 G A LRRC39 Silent p.L224L 0.91 TCGA-GN-A8LK-06 1 100715385 100715385 G A DBT 5'UTR 0.88 TCGA-GN-A8LK-06 1 103364547 103364547 G A COL11A1 Missense_Mutation p.P1364S 0.96 unknown(0) TCGA-GN-A8LK-06 1 10357284 10357284 C T KIF1B Missense_Mutation p.L653F 0.97 deleterious(0.04) probably_damaging(0.996) TCGA-GN-A8LK-06 1 104161665 104161665 G A AMY2A Missense_Mutation p.D150N 0.20 tolerated(0.08) probably_damaging(0.984) TCGA-GN-A8LK-06 1 104203036 104203036 G A AMY1A Silent p.V311V 0.53 TCGA-GN-A8LK-06 1 10510176 10510176 C T CORT 5'UTR 0.94 TCGA-GN-A8LK-06 1 10708070 10708070 G A CASZ1 Silent p.A1095A 0.94 TCGA-GN-A8LK-06 1 109735454 109735454 C T KIAA1324 Silent p.V635V 0.94 TCGA-GN-A8LK-06 1 109807547 109807547 C T CELSR2 Missense_Mutation p.S1841F 0.88 deleterious(0.01) probably_damaging(0.91) TCGA-GN-A8LK-06 1 112999558 112999558 C T CTTNBP2NL Missense_Mutation p.P482S 0.88 tolerated(0.14) probably_damaging(0.998) TCGA-GN-A8LK-06 1 114680480 114680480 G A SYT6 Silent p.S151S 0.94 TCGA-GN-A8LK-06 1 1153884 1153884 A G SDF4 Missense_Mutation p.L289P 0.18 tolerated(0.06) possibly_damaging(0.904) TCGA-GN-A8LK-06 1 11983076 11983076 C A KIAA2013 Nonsense_Mutation p.E502* 0.98 TCGA-GN-A8LK-06 1 119929329 119929329 C T HAO2 Nonsense_Mutation p.R216* 0.95 TCGA-GN-A8LK-06 1 1266827 1266827 C T TAS1R3 Silent p.D34D 0.65 TCGA-GN-A8LK-06 1 1275125 1275125 G A DVL1 Missense_Mutation p.S326F 0.27 deleterious(0.01) possibly_damaging(0.693) TCGA-GN-A8LK-06 1 12854460 12854460 G T PRAMEF1 Silent p.L228L 0.17 TCGA-GN-A8LK-06 1 12907852 12907852 C T HNRNPCL1 Silent p.V97V 0.43 TCGA-GN-A8LK-06 1 12921479 12921479 C T PRAMEF2 Missense_Mutation p.R424C 0.80 tolerated(0.18) benign(0.326) TCGA-GN-A8LK-06 1 13695819 13695819 G A PRAMEF19 Silent p.F382F 0.68 TCGA-GN-A8LK-06 1 1404021 1404021 C T ATAD3C 3'UTR 0.66 TCGA-GN-A8LK-06 1 146766105 146766105 C T CHD1L Missense_Mutation p.P841S 0.62 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 146766106 146766106 C T CHD1L Missense_Mutation p.P841L 0.62 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 149879292 149879292 G A SV2A Silent p.F546F 0.26 TCGA-GN-A8LK-06 1 150131013 150131013 G A PLEKHO1 Splice_Site p.X176_splice 0.32 TCGA-GN-A8LK-06 1 150198940 150198940 C T ANP32E Silent p.Q227Q 0.65 TCGA-GN-A8LK-06 1 150482263 150482263 C T ECM1 Intron 0.55 TCGA-GN-A8LK-06 1 151787511 151787511 C T RORC Missense_Mutation p.G230E 0.61 tolerated(0.08) benign(0.016) TCGA-GN-A8LK-06 1 152058802 152058802 T C TCHHL1 Silent p.G452G 0.28 TCGA-GN-A8LK-06 1 152083259 152083259 G A TCHH Missense_Mutation p.P812S 0.66 unknown(0) TCGA-GN-A8LK-06 1 152083260 152083260 G A TCHH Silent p.L811L 0.66 TCGA-GN-A8LK-06 1 152193234 152193234 G A HRNR Missense_Mutation p.R291C 0.25 unknown(0) TCGA-GN-A8LK-06 1 152277231 152277231 C T FLG Silent p.G3377G 0.30 TCGA-GN-A8LK-06 1 152279155 152279155 C T FLG Missense_Mutation p.G2736E 0.11 benign(0.188) TCGA-GN-A8LK-06 1 152281844 152281844 C T FLG Missense_Mutation p.G1840R 0.29 probably_damaging(0.953) TCGA-GN-A8LK-06 1 152484329 152484329 G A LCE5A Missense_Mutation p.G107S 0.59 tolerated_low_confidence(0.18) unknown(0) TCGA-GN-A8LK-06 1 152884110 152884110 C T IVL 3'UTR 0.21 TCGA-GN-A8LK-06 1 153066228 153066228 C T SPRR2E 5'UTR 0.20 TCGA-GN-A8LK-06 1 153276482 153276482 C T PGLYRP3 Missense_Mutation p.S127N 0.24 tolerated(0.09) benign(0.021) TCGA-GN-A8LK-06 1 153309708 153309708 G A PGLYRP4 Missense_Mutation p.P298S 0.59 tolerated(0.47) benign(0.009) TCGA-GN-A8LK-06 1 153333352 153333352 G A S100A9 3'UTR 0.62 TCGA-GN-A8LK-06 1 153655933 153655933 C T NPR1 Missense_Mutation p.P449S 0.69 deleterious(0) probably_damaging(0.909) TCGA-GN-A8LK-06 1 153659739 153659739 G A NPR1 Missense_Mutation p.V667M 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 154493879 154493879 G A TDRD10 Missense_Mutation p.R98Q 0.34 tolerated(0.21) possibly_damaging(0.656) TCGA-GN-A8LK-06 1 155159801 155159801 G A MUC1 Missense_Mutation p.P418L 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A8LK-06 1 155184860 155184860 T C MTX1 3'Flank 0.23 TCGA-GN-A8LK-06 1 155220374 155220374 G A FAM189B Silent p.S401S 0.39 TCGA-GN-A8LK-06 1 155227132 155227132 G A SCAMP3 Silent p.F241F 0.67 TCGA-GN-A8LK-06 1 155290662 155290662 A C RUSC1 5'Flank 0.24 TCGA-GN-A8LK-06 1 155886458 155886458 G A KIAA0907 Missense_Mutation p.S504L 0.55 tolerated(0.23) benign(0.062) TCGA-GN-A8LK-06 1 155911784 155911784 C T RXFP4 Missense_Mutation p.P95L 0.44 deleterious(0.03) probably_damaging(1) TCGA-GN-A8LK-06 1 156203427 156203427 C T PMF1 Silent p.I92I 0.27 TCGA-GN-A8LK-06 1 1562304 1562304 C T MIB2 Missense_Mutation p.P504S 0.60 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 156374213 156374213 C T C1orf61 3'UTR 0.22 TCGA-GN-A8LK-06 1 156518208 156518208 G A IQGAP3 Nonsense_Mutation p.Q689* 0.29 TCGA-GN-A8LK-06 1 156813976 156813976 C T INSRR Missense_Mutation p.G945D 0.38 tolerated(0.22) benign(0.046) TCGA-GN-A8LK-06 1 156834180 156834180 G A NTRK1 Missense_Mutation p.E83K 0.50 tolerated(0.27) benign(0.001) TCGA-GN-A8LK-06 1 156834547 156834547 C T NTRK1 Silent p.F105F 0.36 TCGA-GN-A8LK-06 1 156914219 156914219 C T ARHGEF11 Missense_Mutation p.D1000N 0.37 deleterious(0) possibly_damaging(0.461) TCGA-GN-A8LK-06 1 157062813 157062813 G A ETV3L Silent p.P238P 0.39 TCGA-GN-A8LK-06 1 157667325 157667325 G A FCRL3 Intron 0.47 TCGA-GN-A8LK-06 1 157803300 157803300 G A CD5L Missense_Mutation p.P241S 0.47 tolerated(0.22) benign(0.063) TCGA-GN-A8LK-06 1 158227613 158227613 T C CD1A 3'UTR 0.39 TCGA-GN-A8LK-06 1 158261902 158261902 C T CD1C Silent p.G119G 0.44 TCGA-GN-A8LK-06 1 158436035 158436035 C T OR10K1 Silent p.I228I 0.45 TCGA-GN-A8LK-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.49 deleterious(0.05) benign(0.008) TCGA-GN-A8LK-06 1 158549253 158549253 A G OR10X1 Missense_Mutation p.L146P 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 1 158576877 158576877 T G OR10Z1 Missense_Mutation p.S217A 0.49 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A8LK-06 1 158576878 158576878 C T OR10Z1 Missense_Mutation p.S217F 0.50 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 1 158596657 158596657 C T SPTA1 Nonsense_Mutation p.W1935* 0.42 TCGA-GN-A8LK-06 1 158624459 158624459 G A SPTA1 Missense_Mutation p.P993L 0.51 deleterious(0) benign(0.345) TCGA-GN-A8LK-06 1 158747061 158747061 C T OR6N2 Missense_Mutation p.R122K 0.45 deleterious(0) possibly_damaging(0.799) TCGA-GN-A8LK-06 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.40 tolerated(0.38) benign(0.101) TCGA-GN-A8LK-06 1 158943516 158943516 C T PYHIN1 Missense_Mutation p.S480F 0.50 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-GN-A8LK-06 1 159505015 159505015 C T OR10J5 Silent p.P261P 0.49 TCGA-GN-A8LK-06 1 159558601 159558601 G A APCS 3'UTR 0.61 TCGA-GN-A8LK-06 1 159684319 159684319 C T CRP 5'UTR 0.48 TCGA-GN-A8LK-06 1 159922302 159922302 G A SLAMF9 Silent p.I138I 0.50 TCGA-GN-A8LK-06 1 160160814 160160814 C T CASQ1 Silent p.I91I 0.53 TCGA-GN-A8LK-06 1 160259886 160259886 G A COPA 3'UTR 0.49 TCGA-GN-A8LK-06 1 160328074 160328074 C T NCSTN 3'UTR 0.48 TCGA-GN-A8LK-06 1 160519751 160519751 C T CD84 Missense_Mutation p.E310K 0.48 tolerated(0.06) benign(0.279) TCGA-GN-A8LK-06 1 161012365 161012365 G A USF1 Nonsense_Mutation p.R52* 0.51 TCGA-GN-A8LK-06 1 161012366 161012366 G A USF1 Silent p.F51F 0.50 TCGA-GN-A8LK-06 1 161043530 161043530 G A PVRL4 Missense_Mutation p.H405Y 0.45 tolerated(0.09) benign(0.065) TCGA-GN-A8LK-06 1 161495311 161495311 C T HSPA6 Missense_Mutation p.S288F 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GN-A8LK-06 1 163043337 163043337 C T RGS4 Silent p.I198I 0.49 TCGA-GN-A8LK-06 1 16460000 16460000 T A EPHA2 Missense_Mutation p.T614S 0.98 tolerated(0.32) benign(0.002) TCGA-GN-A8LK-06 1 166927280 166927280 G A ILDR2 Silent p.F35F 0.53 TCGA-GN-A8LK-06 1 166991053 166991053 C T MAEL Silent p.S422S 0.19 TCGA-GN-A8LK-06 1 167780138 167780138 G A ADCY10 Silent p.L1499L 0.41 TCGA-GN-A8LK-06 1 168066076 168066076 G A GPR161 Nonsense_Mutation p.Q277* 0.36 TCGA-GN-A8LK-06 1 169823720 169823720 G A SCYL3 Silent p.P620P 0.47 TCGA-GN-A8LK-06 1 17084995 17084995 C G MST1L RNA 0.13 TCGA-GN-A8LK-06 1 172001583 172001583 G A DNM3 Missense_Mutation p.D211N 0.52 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 172007548 172007548 C T DNM3 Silent p.A313A 0.45 TCGA-GN-A8LK-06 1 173010585 173010585 G A TNFSF18 Silent p.F174F 0.46 TCGA-GN-A8LK-06 1 173176351 173176351 G A TNFSF4 5'UTR 0.46 TCGA-GN-A8LK-06 1 17318747 17318747 G A ATP13A2 Missense_Mutation p.P666S 1.00 tolerated(0.16) benign(0.057) TCGA-GN-A8LK-06 1 173504973 173504973 G A SLC9C2 Missense_Mutation p.P591S 0.35 tolerated(0.61) benign(0.01) TCGA-GN-A8LK-06 1 173579211 173579211 C T ANKRD45 3'UTR 0.41 TCGA-GN-A8LK-06 1 175299237 175299237 G A TNR Missense_Mutation p.R1256C 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 175324689 175324689 C T TNR Missense_Mutation p.E1067K 0.41 tolerated(0.25) benign(0.278) TCGA-GN-A8LK-06 1 175355351 175355351 C T TNR Missense_Mutation p.D532N 0.39 deleterious(0) probably_damaging(0.917) TCGA-GN-A8LK-06 1 175375791 175375791 G A TNR Silent p.I20I 0.47 TCGA-GN-A8LK-06 1 176758976 176758976 G A PAPPA2 Missense_Mutation p.G1583R 0.45 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 176903331 176903331 C T ASTN1 Silent p.Q876Q 0.48 TCGA-GN-A8LK-06 1 176926840 176926840 G A ASTN1 Missense_Mutation p.R621C 0.52 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 1 177245527 177245527 C T BRINP2 Silent p.I323I 0.36 TCGA-GN-A8LK-06 1 179564787 179564787 G A TDRD5 Missense_Mutation p.R222K 0.45 tolerated(0.57) benign(0.086) TCGA-GN-A8LK-06 1 179600000 179600000 G A TDRD5 Silent p.R357R 0.21 TCGA-GN-A8LK-06 1 180235561 180235561 G A LHX4 Missense_Mutation p.G95S 0.23 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 1 180240445 180240445 G A LHX4 Intron 0.42 TCGA-GN-A8LK-06 1 181480533 181480533 G A CACNA1E Silent p.G133G 0.43 TCGA-GN-A8LK-06 1 181702707 181702707 G A CACNA1E Missense_Mutation p.G1028D 0.35 tolerated(0.72) probably_damaging(0.931) TCGA-GN-A8LK-06 1 181735740 181735740 G A CACNA1E Missense_Mutation p.G1625E 0.50 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LK-06 1 183536351 183536351 C T NCF2 Missense_Mutation p.M281I 0.38 tolerated(0.28) benign(0.012) TCGA-GN-A8LK-06 1 184777358 184777358 C T FAM129A Silent p.R395R 0.44 TCGA-GN-A8LK-06 1 186007984 186007984 C T HMCN1 Missense_Mutation p.R1959C 0.50 possibly_damaging(0.863) TCGA-GN-A8LK-06 1 186413603 186413603 C T PDC Silent p.E83E 0.52 TCGA-GN-A8LK-06 1 18702878 18702878 C T IGSF21 Missense_Mutation p.H364Y 0.49 deleterious(0.03) possibly_damaging(0.457) TCGA-GN-A8LK-06 1 190067866 190067866 G A BRINP3 Missense_Mutation p.S528F 0.40 deleterious(0.01) possibly_damaging(0.726) TCGA-GN-A8LK-06 1 19186046 19186046 C T TAS1R2 Missense_Mutation p.G37S 1.00 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 192316488 192316588 1:192316488-192316588 - RGS21 large deletion p.X20_splice 0.23 TCGA-GN-A8LK-06 1 196461450 196461450 C T KCNT2 Missense_Mutation p.M39I 0.47 deleterious(0) benign(0.006) TCGA-GN-A8LK-06 1 197398624 197398624 G A CRB1 Missense_Mutation p.D908N 0.23 deleterious(0.04) benign(0.134) TCGA-GN-A8LK-06 1 197407904 197407904 C T CRB1 Intron 0.47 TCGA-GN-A8LK-06 1 197890578 197890578 C T LHX9 Silent p.F174F 0.46 TCGA-GN-A8LK-06 1 198671551 198671551 C T PTPRC Missense_Mutation p.P159S 0.48 tolerated(0.11) benign(0.073) TCGA-GN-A8LK-06 1 198685878 198685878 G A PTPRC Silent p.T453T 0.49 TCGA-GN-A8LK-06 1 198704321 198704321 A G PTPRC Silent p.V781V 0.48 TCGA-GN-A8LK-06 1 200377449 200377449 A G ZNF281 Missense_Mutation p.V462A 0.38 tolerated(1) benign(0.057) TCGA-GN-A8LK-06 1 200801337 200801337 C G CAMSAP2 Missense_Mutation p.R219G 0.39 deleterious(0) possibly_damaging(0.748) TCGA-GN-A8LK-06 1 200842625 200842625 C T GPR25 Missense_Mutation p.R154C 0.73 deleterious(0.03) benign(0.045) TCGA-GN-A8LK-06 1 200958059 200958059 C T KIF21B Missense_Mutation p.G1045R 0.43 deleterious(0.01) possibly_damaging(0.771) TCGA-GN-A8LK-06 1 200973928 200973928 C T KIF21B Missense_Mutation p.R289Q 0.42 deleterious(0) benign(0.219) TCGA-GN-A8LK-06 1 201980355 201980355 C T ELF3 Missense_Mutation p.P31S 0.47 tolerated(0.17) benign(0.003) TCGA-GN-A8LK-06 1 202572144 202572144 C T SYT2 Missense_Mutation p.D150N 0.50 tolerated(0.48) probably_damaging(0.934) TCGA-GN-A8LK-06 1 203185841 203185841 G A CHIT1 3'UTR 0.64 TCGA-GN-A8LK-06 1 203452954 203452954 C G PRELP Silent p.P214P 0.45 TCGA-GN-A8LK-06 1 204507391 204507391 C T MDM4 Missense_Mutation p.P156S 0.38 tolerated(0.39) benign(0.004) TCGA-GN-A8LK-06 1 204913511 204913511 G A NFASC Missense_Mutation p.G23E 0.50 deleterious(0.01) possibly_damaging(0.596) TCGA-GN-A8LK-06 1 205052845 205052845 C T TMEM81 Missense_Mutation p.D202N 0.48 tolerated(0.51) benign(0.054) TCGA-GN-A8LK-06 1 205689752 205689752 T A NUCKS1 Nonsense_Mutation p.K87* 0.46 TCGA-GN-A8LK-06 1 207110626 207110626 C T PIGR Missense_Mutation p.G287R 0.45 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 1 207110627 207110627 C T PIGR Silent p.L286L 0.46 TCGA-GN-A8LK-06 1 207684975 207684975 G A CR1 Missense_Mutation p.D155N 0.39 tolerated(0.57) possibly_damaging(0.7) TCGA-GN-A8LK-06 1 208217977 208217977 G A PLXNA2 Silent p.L1250L 0.36 TCGA-GN-A8LK-06 1 209799074 209799074 T A LAMB3 Missense_Mutation p.E632V 0.46 deleterious(0.03) benign(0.197) TCGA-GN-A8LK-06 1 209878281 209878281 C T HSD11B1 5'UTR 0.39 TCGA-GN-A8LK-06 1 209933720 209933720 C T TRAF3IP3 Silent p.P112P 0.60 TCGA-GN-A8LK-06 1 210948881 210948881 C T KCNH1 Missense_Mutation p.G641R 0.52 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 1 211654478 211654478 C T RD3 Missense_Mutation p.G94R 0.46 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 212506908 212506908 C T PPP2R5A Missense_Mutation p.P150S 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 214171306 214171306 C T PROX1 Silent p.T476T 0.46 TCGA-GN-A8LK-06 1 214507499 214507499 G C SMYD2 Intron 0.56 TCGA-GN-A8LK-06 1 21903946 21903946 C G ALPL Silent p.A460A 0.99 TCGA-GN-A8LK-06 1 220369621 220369621 G A RAB3GAP2 Missense_Mutation p.P311S 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 22211411 22211411 C T HSPG2 Silent p.R452R 0.96 TCGA-GN-A8LK-06 1 222695836 222695836 C T HHIPL2 3'UTR 0.53 TCGA-GN-A8LK-06 1 223285147 223285147 G A TLR5 Silent p.F409F 0.44 TCGA-GN-A8LK-06 1 226556011 226556011 C T PARP1 Silent p.Q722Q 0.41 TCGA-GN-A8LK-06 1 226827336 226827336 C T ITPKB Silent p.R825R 0.29 TCGA-GN-A8LK-06 1 228468003 228468003 C T OBSCN Missense_Mutation p.P3025L 0.46 benign(0.053) TCGA-GN-A8LK-06 1 228469735 228469735 C T OBSCN Missense_Mutation p.P3196S 0.36 benign(0.212) TCGA-GN-A8LK-06 1 228469736 228469736 C T OBSCN Missense_Mutation p.P3196L 0.36 benign(0.062) TCGA-GN-A8LK-06 1 228479621 228479621 G A OBSCN Silent p.E3883E 0.42 TCGA-GN-A8LK-06 1 228481997 228481997 G A OBSCN Missense_Mutation p.S4188N 0.51 possibly_damaging(0.484) TCGA-GN-A8LK-06 1 228554872 228554872 G A OBSCN Missense_Mutation p.E7499K 0.43 possibly_damaging(0.487) TCGA-GN-A8LK-06 1 229623222 229623222 T A NUP133 Missense_Mutation p.N445Y 0.50 deleterious(0.02) benign(0.383) TCGA-GN-A8LK-06 1 22964219 22964219 G A C1QA Missense_Mutation p.G37E 1.00 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A8LK-06 1 229773780 229773780 C T URB2 Silent p.S1140S 0.44 TCGA-GN-A8LK-06 1 23384014 23384014 G A KDM1A Missense_Mutation p.G343E 0.47 deleterious(0.01) possibly_damaging(0.863) TCGA-GN-A8LK-06 1 234743074 234743074 G A IRF2BP2 Missense_Mutation p.P525S 0.41 tolerated(0.08) probably_damaging(0.968) TCGA-GN-A8LK-06 1 235416088 235416088 G A ARID4B Missense_Mutation p.S104F 0.47 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 1 235505823 235505823 C T GGPS1 Silent p.F213F 0.46 TCGA-GN-A8LK-06 1 236646844 236646844 G A EDARADD 3'Flank 0.42 TCGA-GN-A8LK-06 1 236736071 236736071 G A HEATR1 Missense_Mutation p.P1173S 0.46 tolerated(1) benign(0) TCGA-GN-A8LK-06 1 237617871 237617872 - T RYR2 Frame_Shift_Ins p.E492* 0.34 TCGA-GN-A8LK-06 1 240071732 240071732 G A CHRM3 Missense_Mutation p.M327I 0.52 tolerated(0.42) benign(0) TCGA-GN-A8LK-06 1 240286627 240286627 G A FMN2 Silent p.T588T 0.53 TCGA-GN-A8LK-06 1 240370360 240370360 G A FMN2 Missense_Mutation p.E750K 0.53 unknown(0) TCGA-GN-A8LK-06 1 240371762 240371762 T A FMN2 Missense_Mutation p.I1217N 0.50 unknown(0) TCGA-GN-A8LK-06 1 24393538 24393538 C T MYOM3 Silent p.E1132E 1.00 TCGA-GN-A8LK-06 1 245912939 245912939 C T SMYD3 Missense_Mutation p.G405S 0.50 tolerated(0.07) probably_damaging(0.981) TCGA-GN-A8LK-06 1 247769041 247769041 G A OR2G3 Missense_Mutation p.D52N 0.46 deleterious(0.05) possibly_damaging(0.58) TCGA-GN-A8LK-06 1 247835417 247835417 C T OR13G1 3'UTR 0.56 TCGA-GN-A8LK-06 1 247921190 247921190 G A OR1C1 Silent p.I173I 0.44 TCGA-GN-A8LK-06 1 247978248 247978248 C T OR14A16 Missense_Mutation p.E262K 0.51 tolerated(0.98) benign(0.004) TCGA-GN-A8LK-06 1 248039219 248039219 C T TRIM58 Missense_Mutation p.P297S 0.56 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 1 248084948 248084948 C T OR2T8 Missense_Mutation p.S210F 0.48 deleterious(0.04) benign(0.232) TCGA-GN-A8LK-06 1 248085021 248085021 G A OR2T8 Silent p.K234K 0.37 TCGA-GN-A8LK-06 1 248112192 248112192 C T OR2L8 Silent p.F11F 0.43 TCGA-GN-A8LK-06 1 248551317 248551317 C T OR2T6 Silent p.I136I 0.43 TCGA-GN-A8LK-06 1 248737705 248737705 G A OR2T34 Silent p.F118F 0.43 TCGA-GN-A8LK-06 1 2541137 2541137 G A MMEL1 Silent p.L142L 0.26 TCGA-GN-A8LK-06 1 26387755 26387755 G A TRIM63 Missense_Mutation p.L135F 0.96 deleterious(0) possibly_damaging(0.861) TCGA-GN-A8LK-06 1 27332663 27332663 G A FAM46B Silent p.V350V 0.91 TCGA-GN-A8LK-06 1 28271827 28271827 G A SMPDL3B Missense_Mutation p.G49E 0.96 deleterious(0.02) probably_damaging(0.994) TCGA-GN-A8LK-06 1 28807023 28807023 C T PHACTR4 Missense_Mutation p.P566L 0.99 deleterious(0) benign(0.272) TCGA-GN-A8LK-06 1 28907105 28907105 C T TRNAU1AP 3'Flank 0.44 TCGA-GN-A8LK-06 1 32687924 32687924 G A TMEM234 5'UTR 0.99 TCGA-GN-A8LK-06 1 34677907 34677907 C T C1orf94 Missense_Mutation p.P541S 0.97 tolerated(0.57) benign(0.093) TCGA-GN-A8LK-06 1 3542287 3542287 T C TPRG1L Missense_Mutation p.W102R 0.63 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 1 3732023 3732023 G A CEP104 Silent p.I907I 0.24 TCGA-GN-A8LK-06 1 38034489 38034489 G T GNL2 Missense_Mutation p.L611I 0.96 tolerated(0.08) probably_damaging(0.998) TCGA-GN-A8LK-06 1 38079856 38079856 C T RSPO1 Missense_Mutation p.A146T 0.87 tolerated(0.24) benign(0.098) TCGA-GN-A8LK-06 1 38181743 38181743 G A EPHA10 3'UTR 1.00 TCGA-GN-A8LK-06 1 38181744 38181744 G A EPHA10 3'UTR 1.00 TCGA-GN-A8LK-06 1 38450416 38450416 G A SF3A3 Silent p.L113L 0.97 TCGA-GN-A8LK-06 1 40011529 40011529 C T PPIEL Intron 0.96 TCGA-GN-A8LK-06 1 40029318 40029318 G A PABPC4 Missense_Mutation p.R546C 0.33 tolerated(0.1) benign(0.024) TCGA-GN-A8LK-06 1 40029319 40029319 G A PABPC4 Silent p.V545V 0.35 TCGA-GN-A8LK-06 1 42048268 42048268 T C HIVEP3 Missense_Mutation p.K734R 0.99 benign(0.341) TCGA-GN-A8LK-06 1 42870202 42870202 A G RIMKLA Missense_Mutation p.K139E 0.99 tolerated(0.47) possibly_damaging(0.843) TCGA-GN-A8LK-06 1 44303981 44303981 C A ST3GAL3 Silent p.P169P 0.97 TCGA-GN-A8LK-06 1 44303982 44303982 C T ST3GAL3 Missense_Mutation p.R170W 0.98 deleterious(0) probably_damaging(0.963) TCGA-GN-A8LK-06 1 44438288 44438288 C T DPH2 3'UTR 1.00 TCGA-GN-A8LK-06 1 45295598 45295598 G A PTCH2 Silent p.P306P 1.00 TCGA-GN-A8LK-06 1 45798497 45798497 G A MUTYH Nonsense_Mutation p.Q169* 0.54 TCGA-GN-A8LK-06 1 46206602 46206602 G A IPP Missense_Mutation p.P232L 0.48 tolerated(0.09) benign(0.289) TCGA-GN-A8LK-06 1 46493413 46493413 A T MAST2 Missense_Mutation p.T644S 0.97 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-GN-A8LK-06 1 46493414 46493414 C T MAST2 Missense_Mutation p.T644I 0.97 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-GN-A8LK-06 1 47403759 47403759 G A CYP4A11 Silent p.F82F 0.41 TCGA-GN-A8LK-06 1 47603302 47603302 C T CYP4A22 Nonsense_Mutation p.Q49* 0.99 TCGA-GN-A8LK-06 1 53546525 53546525 C T PODN Silent p.P594P 0.34 TCGA-GN-A8LK-06 1 54610346 54610346 C T CDCP2 Missense_Mutation p.A74T 0.95 tolerated(0.96) benign(0.05) TCGA-GN-A8LK-06 1 54640301 54640301 G A CYB5RL Silent p.F313F 0.53 TCGA-GN-A8LK-06 1 55148468 55148468 G A MROH7 Splice_Site p.X840_splice 0.45 TCGA-GN-A8LK-06 1 57158169 57158169 G A PRKAA2 Missense_Mutation p.D157N 0.99 deleterious(0) probably_damaging(0.931) TCGA-GN-A8LK-06 1 5923382 5923382 G T NPHP4 Silent p.I1408I 0.30 TCGA-GN-A8LK-06 1 60499158 60499158 G A C1orf87 Missense_Mutation p.P340L 0.99 deleterious(0) probably_damaging(0.961) TCGA-GN-A8LK-06 1 6191726 6191726 C T CHD5 Missense_Mutation p.G1076E 0.37 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 1 6214919 6214919 G A CHD5 Silent p.S182S 0.67 TCGA-GN-A8LK-06 1 64117473 64117473 G A PGM1 Missense_Mutation p.D490N 0.54 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 1 6636516 6636516 G A TAS1R1 Silent p.K434K 0.28 TCGA-GN-A8LK-06 1 72076726 72076726 C T NEGR1 Nonsense_Mutation p.W257* 0.82 TCGA-GN-A8LK-06 1 74575206 74575206 C T LRRIQ3 Missense_Mutation p.E247K 0.93 tolerated(0.42) benign(0.025) TCGA-GN-A8LK-06 1 74835993 74835993 A G FPGT-TNNI3K Silent p.K677K 0.87 TCGA-GN-A8LK-06 1 74835994 74835994 T A FPGT-TNNI3K Missense_Mutation p.L678I 0.89 deleterious(0.04) probably_damaging(0.978) TCGA-GN-A8LK-06 1 76363649 76363649 C T MSH4 Missense_Mutation p.P805S 0.92 deleterious(0) benign(0.297) TCGA-GN-A8LK-06 1 79387471 79387471 C T ELTD1 Missense_Mutation p.V362I 0.97 tolerated(0.31) benign(0.001) TCGA-GN-A8LK-06 1 82409052 82409052 T C LPHN2 Missense_Mutation p.L266P 0.87 deleterious(0) probably_damaging(0.991) TCGA-GN-A8LK-06 1 85128012 85128012 G A SSX2IP Missense_Mutation p.R266C 0.93 tolerated(0.05) benign(0.117) TCGA-GN-A8LK-06 1 86591737 86591737 G A COL24A1 Silent p.F94F 0.93 TCGA-GN-A8LK-06 1 90493116 90493116 A G ZNF326 Missense_Mutation p.I535M 1.00 tolerated_low_confidence(0.09) unknown(0) TCGA-GN-A8LK-06 1 906350 906350 C T PLEKHN1 Silent p.L192L 0.25 TCGA-GN-A8LK-06 1 92441909 92441909 C T BRDT Missense_Mutation p.P178S 0.95 tolerated(0.08) benign(0.006) TCGA-GN-A8LK-06 1 92979507 92979507 C T EVI5 Silent p.Q713Q 0.94 TCGA-GN-A8LK-06 1 9323864 9323864 C T H6PD Missense_Mutation p.L438F 0.66 deleterious(0.01) benign(0.103) TCGA-GN-A8LK-06 1 9324231 9324231 C T H6PD Missense_Mutation p.S560F 0.75 deleterious(0.02) benign(0.163) TCGA-GN-A8LK-06 1 94047898 94047898 G A BCAR3 Missense_Mutation p.P549L 0.92 tolerated(0.09) probably_damaging(0.96) TCGA-GN-A8LK-06 1 97270394 97270414 GCTGCTGCAGCAGCTGCTGCA - PTBP2 In_Frame_Del p.A318_A324del 0.43 TCGA-GN-A8LK-06 1 984991 984991 C T AGRN Silent p.I1520I 0.44 TCGA-GN-A8LK-06 20 11898819 11898819 C T BTBD3 5'UTR 0.60 TCGA-GN-A8LK-06 20 1285771 1285771 G A SNPH Silent p.V186V 0.35 TCGA-GN-A8LK-06 20 13269314 13269314 C T ISM1 Silent p.D257D 0.44 TCGA-GN-A8LK-06 20 13765772 13765772 C T NDUFAF5 Missense_Mutation p.P20S 0.29 tolerated(0.45) benign(0.001) TCGA-GN-A8LK-06 20 1616175 1616175 C T SIRPG Silent p.V273V 0.49 TCGA-GN-A8LK-06 20 1616243 1616243 G A SIRPG Missense_Mutation p.P251S 0.46 tolerated(0.1) benign(0.163) TCGA-GN-A8LK-06 20 17434490 17434490 C T PCSK2 Missense_Mutation p.S330F 0.52 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 20 1903084 1903084 T C SIRPA Missense_Mutation p.S294P 0.50 deleterious(0.03) possibly_damaging(0.761) TCGA-GN-A8LK-06 20 23064571 23064571 T C CD93 3'UTR 0.43 TCGA-GN-A8LK-06 20 23424650 23424650 C T CSTL1 Missense_Mutation p.S100F 0.44 deleterious(0.04) possibly_damaging(0.635) TCGA-GN-A8LK-06 20 23967234 23967234 G A GGTLC1 Silent p.F5F 0.45 TCGA-GN-A8LK-06 20 2413241 2413241 C T TGM6 Silent p.F691F 0.50 TCGA-GN-A8LK-06 20 29891223 29891223 C T DEFB116 Missense_Mutation p.R34Q 0.48 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 20 30310141 30310141 G A BCL2L1 5'UTR 0.50 TCGA-GN-A8LK-06 20 30409384 30409384 G A MYLK2 Missense_Mutation p.E206K 0.50 tolerated(0.06) benign(0.345) TCGA-GN-A8LK-06 20 30411329 30411329 G T MYLK2 Silent p.L274L 0.46 TCGA-GN-A8LK-06 20 30458362 30458362 C T DUSP15 5'UTR 0.52 TCGA-GN-A8LK-06 20 30458363 30458363 C T DUSP15 5'UTR 0.50 TCGA-GN-A8LK-06 20 30747839 30747839 C T TM9SF4 Silent p.F538F 0.41 TCGA-GN-A8LK-06 20 30753170 30753170 C T TM9SF4 Silent p.L618L 0.44 TCGA-GN-A8LK-06 20 31670789 31670789 T C BPIFB4 Missense_Mutation p.L51P 0.41 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-GN-A8LK-06 20 34242674 34242674 G A RBM12 Missense_Mutation p.P191S 0.46 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A8LK-06 20 34775665 34775665 G A EPB41L1 Missense_Mutation p.V285I 0.56 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LK-06 20 35177664 35177664 C T MYL9 3'UTR 0.50 TCGA-GN-A8LK-06 20 35441120 35441120 G A SOGA1 Missense_Mutation p.S815F 0.27 tolerated(0.13) probably_damaging(0.952) TCGA-GN-A8LK-06 20 35532652 35532652 C T SAMHD1 Missense_Mutation p.E471K 0.46 tolerated(0.11) benign(0.013) TCGA-GN-A8LK-06 20 3649946 3649946 C T ADAM33 Missense_Mutation p.A802T 0.27 tolerated(0.36) benign(0.001) TCGA-GN-A8LK-06 20 36776435 36776435 G A TGM2 Silent p.F203F 0.61 TCGA-GN-A8LK-06 20 36784303 36784303 C T TGM2 Missense_Mutation p.G127R 0.27 tolerated(0.14) benign(0.148) TCGA-GN-A8LK-06 20 37146237 37146237 C T RALGAPB Silent p.P380P 0.44 TCGA-GN-A8LK-06 20 37394905 37394905 C T ACTR5 Missense_Mutation p.H440Y 0.42 tolerated(0.33) benign(0.362) TCGA-GN-A8LK-06 20 3782683 3782683 C T CDC25B Missense_Mutation p.P345L 0.36 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 20 40049608 40049608 C T CHD6 Silent p.E1889E 0.49 TCGA-GN-A8LK-06 20 41076893 41076893 G A PTPRT Silent p.P509P 0.43 TCGA-GN-A8LK-06 20 41385109 41385109 G A PTPRT Silent p.I284I 0.47 TCGA-GN-A8LK-06 20 42328554 42328554 C T MYBL2 Missense_Mutation p.P274L 0.45 tolerated(0.17) benign(0.039) TCGA-GN-A8LK-06 20 42680142 42680142 C T TOX2 Missense_Mutation p.P203L 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A8LK-06 20 43723936 43723936 C T KCNS1 Missense_Mutation p.G386S 0.40 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 20 44519407 44519407 A G NEURL2 Missense_Mutation p.L75P 0.38 tolerated(0.24) possibly_damaging(0.664) TCGA-GN-A8LK-06 20 44600076 44600076 G A ZNF335 5'UTR 0.57 TCGA-GN-A8LK-06 20 45354086 45354086 C T SLC2A10 Silent p.S137S 0.54 TCGA-GN-A8LK-06 20 45354640 45354640 C T SLC2A10 Missense_Mutation p.P322L 0.53 tolerated(0.23) possibly_damaging(0.688) TCGA-GN-A8LK-06 20 45839270 45839270 G A ZMYND8 3'Flank 0.52 TCGA-GN-A8LK-06 20 47989730 47989730 C T KCNB1 Silent p.G789G 0.45 TCGA-GN-A8LK-06 20 48130890 48130890 G A PTGIS Missense_Mutation p.L300F 0.41 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 20 48741504 48741504 G A TMEM189 Intron 0.42 TCGA-GN-A8LK-06 20 49576488 49576488 C T MOCS3 Missense_Mutation p.A370V 0.43 deleterious(0.03) benign(0.195) TCGA-GN-A8LK-06 20 49626707 49626707 G A KCNG1 Nonsense_Mutation p.Q57* 0.56 TCGA-GN-A8LK-06 20 50405531 50405531 C T SALL4 Missense_Mutation p.G871S 0.40 tolerated(0.76) benign(0.006) TCGA-GN-A8LK-06 20 5282941 5282941 G A PROKR2 Silent p.F300F 0.48 TCGA-GN-A8LK-06 20 55953193 55953193 C T RAE1 3'UTR 0.38 TCGA-GN-A8LK-06 20 56179576 56179576 C T ZBP1 3'UTR 0.47 TCGA-GN-A8LK-06 20 56188182 56188182 C T ZBP1 Intron 0.50 TCGA-GN-A8LK-06 20 56190061 56190061 G A ZBP1 Silent p.I128I 0.47 TCGA-GN-A8LK-06 20 57248711 57248711 T C STX16 Missense_Mutation p.Y273H 0.26 deleterious(0) possibly_damaging(0.782) TCGA-GN-A8LK-06 20 57248713 57248713 T A STX16 Nonsense_Mutation p.Y273* 0.26 TCGA-GN-A8LK-06 20 57415733 57415733 G A RP4-806M20.3 5'Flank 0.44 TCGA-GN-A8LK-06 20 57415734 57415734 G A RP4-806M20.3 5'Flank 0.46 TCGA-GN-A8LK-06 20 57599799 57599799 G A TUBB1 Silent p.T439T 0.47 TCGA-GN-A8LK-06 20 57781969 57781969 G A ZNF831 Silent p.G1295G 0.42 TCGA-GN-A8LK-06 20 57828080 57828080 C T ZNF831 Missense_Mutation p.P1359S 0.52 tolerated(0.4) benign(0.026) TCGA-GN-A8LK-06 20 57876694 57876694 C T EDN3 Silent p.S94S 0.47 TCGA-GN-A8LK-06 20 57899515 57899515 G A EDN3 3'UTR 0.43 TCGA-GN-A8LK-06 20 5919095 5919095 G A TRMT6 3'UTR 0.45 TCGA-GN-A8LK-06 20 6060163 6060163 C T FERMT1 Missense_Mutation p.D594N 0.44 tolerated(0.09) probably_damaging(0.99) TCGA-GN-A8LK-06 20 60910080 60910080 G A LAMA5 Missense_Mutation p.R827C 0.43 probably_damaging(0.973) TCGA-GN-A8LK-06 20 61039971 61039971 G A GATA5 Missense_Mutation p.P372L 0.49 deleterious(0.01) benign(0.126) TCGA-GN-A8LK-06 20 61594630 61594644 ATCCTGGCCTTGGGT - SLC17A9 In_Frame_Del p.I212_G216del 0.23 TCGA-GN-A8LK-06 20 61929327 61929327 G A COL20A1 Missense_Mutation p.E50K 0.42 tolerated(0.12) possibly_damaging(0.465) TCGA-GN-A8LK-06 20 62126269 62126269 G A EEF1A2 Silent p.I170I 0.38 TCGA-GN-A8LK-06 20 62421510 62421510 G A ZBTB46 Nonsense_Mutation p.Q201* 0.51 TCGA-GN-A8LK-06 20 62700824 62700824 C T TCEA2 Missense_Mutation p.T147I 0.48 tolerated(0.13) benign(0.008) TCGA-GN-A8LK-06 20 62839571 62839571 C T MYT1 Missense_Mutation p.S341F 0.49 probably_damaging(0.91) TCGA-GN-A8LK-06 20 860435 860435 C T ANGPT4 Silent p.E336E 0.37 TCGA-GN-A8LK-06 20 9440420 9440420 G A PLCB4 Missense_Mutation p.E1059K 0.44 tolerated(0.53) benign(0.245) TCGA-GN-A8LK-06 20 9498745 9498745 G A LAMP5 Silent p.K178K 0.38 TCGA-GN-A8LK-06 20 9546627 9546627 G A PAK7 Silent p.I465I 0.40 TCGA-GN-A8LK-06 20 9624897 9624897 G A PAK7 Missense_Mutation p.P27L 0.41 tolerated(0.14) possibly_damaging(0.506) TCGA-GN-A8LK-06 21 10906876 10906877 TT C TPTE 3'UTR 0.20 TCGA-GN-A8LK-06 21 11058273 11058273 C T BAGE2 RNA 0.06 TCGA-GN-A8LK-06 21 11098803 11098803 C T BAGE2 RNA 0.28 TCGA-GN-A8LK-06 21 15537625 15537625 G A LIPI Missense_Mutation p.P295S 0.49 deleterious(0.02) possibly_damaging(0.586) TCGA-GN-A8LK-06 21 15561493 15561493 C T LIPI Silent p.R119R 0.42 TCGA-GN-A8LK-06 21 17443535 17443535 C A LINC00478 RNA 0.48 TCGA-GN-A8LK-06 21 18924221 18924221 T G CXADR Missense_Mutation p.V122G 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 21 27354660 27354660 G A APP Silent p.S407S 0.45 TCGA-GN-A8LK-06 21 28315715 28315715 G A ADAMTS5 Silent p.F463F 0.31 TCGA-GN-A8LK-06 21 31654905 31654905 G A KRTAP24-1 Missense_Mutation p.P116S 0.94 tolerated(0.19) probably_damaging(0.96) TCGA-GN-A8LK-06 21 33060763 33060763 G A SCAF4 Missense_Mutation p.P634S 0.41 benign(0.157) TCGA-GN-A8LK-06 21 37444956 37444956 C T CBR1 Silent p.L204L 0.54 TCGA-GN-A8LK-06 21 37721656 37721656 C T MORC3 Silent p.F351F 0.53 TCGA-GN-A8LK-06 21 37721657 37721657 C A MORC3 Missense_Mutation p.L352I 0.52 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 21 37741329 37741329 A G MORC3 Missense_Mutation p.K555E 0.54 deleterious(0.04) probably_damaging(0.965) TCGA-GN-A8LK-06 21 38115840 38115840 A G SIM2 Missense_Mutation p.N384S 0.41 tolerated(1) benign(0.01) TCGA-GN-A8LK-06 21 38572576 38572576 A G TTC3 Missense_Mutation p.K1965R 0.56 tolerated(0.11) benign(0.076) TCGA-GN-A8LK-06 21 41385293 41385293 G A DSCAM Missense_Mutation p.P1903S 0.49 tolerated_low_confidence(0.52) benign(0.265) TCGA-GN-A8LK-06 21 41424024 41424024 G T DSCAM Silent p.S1682S 0.49 TCGA-GN-A8LK-06 21 41455888 41455888 G A DSCAM Missense_Mutation p.S1393F 0.52 deleterious(0) probably_damaging(0.953) TCGA-GN-A8LK-06 21 43165940 43165940 G A RIPK4 Silent p.S305S 0.45 TCGA-GN-A8LK-06 21 43994967 43994967 C T SLC37A1 Missense_Mutation p.P488L 0.37 deleterious(0.01) possibly_damaging(0.716) TCGA-GN-A8LK-06 21 45152435 45152435 T C PDXK Intron 0.43 TCGA-GN-A8LK-06 21 45784115 45784115 G A TRPM2 Missense_Mutation p.D125N 0.47 tolerated(0.11) benign(0.334) TCGA-GN-A8LK-06 21 45929234 45929234 G A TSPEAR Silent p.I534I 0.49 TCGA-GN-A8LK-06 21 46640852 46640852 G A ADARB1 Missense_Mutation p.G657R 0.45 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 21 46951658 46951658 G A SLC19A1 Silent p.V198V 0.57 TCGA-GN-A8LK-06 21 47349898 47349898 C T PCBP3 Missense_Mutation p.P262L 0.49 tolerated(0.08) benign(0.065) TCGA-GN-A8LK-06 22 17072424 17072424 G A CCT8L2 Silent p.L339L 0.42 TCGA-GN-A8LK-06 22 18072907 18072907 G A SLC25A18 Missense_Mutation p.G285S 0.52 tolerated(0.37) probably_damaging(0.985) TCGA-GN-A8LK-06 22 18072908 18072908 G A SLC25A18 Missense_Mutation p.G285D 0.52 tolerated(0.18) probably_damaging(0.995) TCGA-GN-A8LK-06 22 18370146 18370146 G A MICAL3 Silent p.S649S 0.54 TCGA-GN-A8LK-06 22 18378095 18378095 G A MICAL3 Silent p.V468V 0.49 TCGA-GN-A8LK-06 22 19365436 19365436 C T HIRA Silent p.V523V 0.46 TCGA-GN-A8LK-06 22 20024545 20024545 G A TANGO2 Intron 0.43 TCGA-GN-A8LK-06 22 20096526 20096526 G A DGCR8 Silent p.R746R 0.44 TCGA-GN-A8LK-06 22 21096604 21096604 G A PI4KA Missense_Mutation p.P1218L 0.42 deleterious(0.05) probably_damaging(0.949) TCGA-GN-A8LK-06 22 21167791 21167791 G A PI4KA Missense_Mutation p.S287F 0.31 deleterious(0.01) benign(0.211) TCGA-GN-A8LK-06 22 21354468 21354468 G A THAP7 Missense_Mutation p.P211S 0.56 deleterious(0.04) probably_damaging(0.957) TCGA-GN-A8LK-06 22 22020298 22020298 G A PPIL2 5'UTR 0.78 TCGA-GN-A8LK-06 22 23223528 23223528 G A IGLV3-1 Missense_Mutation p.D100N 0.53 deleterious(0.01) probably_damaging(0.967) TCGA-GN-A8LK-06 22 23438242 23438242 C T GNAZ Silent p.I120I 0.43 TCGA-GN-A8LK-06 22 23627259 23627259 C T BCR Silent p.L759L 0.56 TCGA-GN-A8LK-06 22 24898132 24898132 G A UPB1 Silent p.E105E 0.47 TCGA-GN-A8LK-06 22 24898133 24898133 G A UPB1 Missense_Mutation p.V106M 0.46 deleterious(0.04) possibly_damaging(0.86) TCGA-GN-A8LK-06 22 26164822 26164822 C T MYO18B Silent p.I313I 0.52 TCGA-GN-A8LK-06 22 26181439 26181439 G A MYO18B Missense_Mutation p.G786D 0.62 deleterious(0.01) probably_damaging(0.987) TCGA-GN-A8LK-06 22 26422963 26422963 C T MYO18B Silent p.P2341P 0.51 TCGA-GN-A8LK-06 22 26761426 26761426 C T SEZ6L Silent p.S896S 0.40 TCGA-GN-A8LK-06 22 26830010 26830010 C T ASPHD2 Silent p.G143G 0.47 TCGA-GN-A8LK-06 22 29457823 29457823 G A C22orf31 5'UTR 0.39 TCGA-GN-A8LK-06 22 30165711 30165711 C T UQCR10 3'UTR 0.53 TCGA-GN-A8LK-06 22 30766869 30766869 G A CCDC157 Silent p.R325R 0.66 TCGA-GN-A8LK-06 22 30857659 30857659 G A SEC14L3 Missense_Mutation p.P265L 0.41 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 22 32480538 32480538 G A SLC5A1 Silent p.R259R 0.47 TCGA-GN-A8LK-06 22 32788225 32788225 A G RTCB Splice_Site p.X470_splice 0.38 TCGA-GN-A8LK-06 22 32811929 32811929 G A BPIFC Silent p.F458F 0.34 TCGA-GN-A8LK-06 22 35947887 35947887 G A RASD2 Silent p.K203K 0.48 TCGA-GN-A8LK-06 22 36661292 36661292 G A APOL1 Missense_Mutation p.R153K 0.49 tolerated(0.27) possibly_damaging(0.789) TCGA-GN-A8LK-06 22 36661374 36661374 G A APOL1 Silent p.G180G 0.47 TCGA-GN-A8LK-06 22 36702011 36702011 G A MYH9 Silent p.F708F 0.42 TCGA-GN-A8LK-06 22 36892227 36892227 C T FOXRED2 Missense_Mutation p.E471K 0.45 deleterious(0.01) probably_damaging(0.954) TCGA-GN-A8LK-06 22 37334175 37334175 G A CSF2RB Silent p.R775R 0.35 TCGA-GN-A8LK-06 22 37334327 37334327 C T CSF2RB Missense_Mutation p.P826L 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 22 37449202 37449202 C T KCTD17 Silent p.F91F 0.50 TCGA-GN-A8LK-06 22 37707513 37707513 G A CYTH4 Missense_Mutation p.G301E 0.51 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 22 38121573 38121573 C T TRIOBP Silent p.L1004L 0.49 TCGA-GN-A8LK-06 22 38121863 38121863 C T TRIOBP Silent p.S1100S 0.53 TCGA-GN-A8LK-06 22 38757505 38757505 G A RP3-449O17.1 RNA 0.34 TCGA-GN-A8LK-06 22 39263035 39263035 G A CBX6 Nonsense_Mutation p.Q140* 0.45 TCGA-GN-A8LK-06 22 39631861 39631861 C T PDGFB Missense_Mutation p.E28K 0.52 tolerated(0.08) probably_damaging(0.998) TCGA-GN-A8LK-06 22 39814842 39814842 C T TAB1 Missense_Mutation p.S219L 0.48 deleterious(0.01) benign(0.259) TCGA-GN-A8LK-06 22 39966869 39966869 C T CACNA1I Silent p.L38L 0.56 TCGA-GN-A8LK-06 22 40066131 40066131 G A CACNA1I Missense_Mutation p.G1428D 0.48 deleterious(0.03) probably_damaging(0.982) TCGA-GN-A8LK-06 22 41077189 41077189 G A MCHR1 Missense_Mutation p.G176R 0.38 tolerated(0.13) probably_damaging(1) TCGA-GN-A8LK-06 22 41363836 41363836 C T RBX1 Missense_Mutation p.L88F 0.44 deleterious(0) probably_damaging(0.961) TCGA-GN-A8LK-06 22 41574034 41574034 C T EP300 Missense_Mutation p.P2107S 0.38 benign(0.262) TCGA-GN-A8LK-06 22 41574152 41574152 C T EP300 Missense_Mutation p.P2146L 0.38 probably_damaging(0.981) TCGA-GN-A8LK-06 22 41574153 41574153 C T EP300 Silent p.P2146P 0.38 TCGA-GN-A8LK-06 22 41923965 41923965 A G ACO2 Missense_Mutation p.N716S 0.47 deleterious_low_confidence(0) benign(0.005) TCGA-GN-A8LK-06 22 42952669 42952669 C T SERHL2 Intron 0.24 TCGA-GN-A8LK-06 22 45278834 45278834 C T PHF21B 3'UTR 0.57 TCGA-GN-A8LK-06 22 46656557 46656557 G T PKDREJ Missense_Mutation p.T888K 0.45 deleterious(0.02) possibly_damaging(0.793) TCGA-GN-A8LK-06 22 46760487 46760487 G A CELSR1 Missense_Mutation p.R2901C 0.39 tolerated(0.14) benign(0) TCGA-GN-A8LK-06 22 46760488 46760488 G A CELSR1 Silent p.H2900H 0.41 TCGA-GN-A8LK-06 22 50832433 50832433 C T PPP6R2 Silent p.D32D 0.46 TCGA-GN-A8LK-06 22 50906310 50906310 G A SBF1 Missense_Mutation p.P62S 0.39 tolerated(0.08) probably_damaging(0.943) TCGA-GN-A8LK-06 22 50967003 50967003 C T TYMP Missense_Mutation p.G152R 0.31 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 22 51020229 51020229 C T CHKB Silent p.G132G 0.41 TCGA-GN-A8LK-06 2 101023047 101023047 C A CHST10 Missense_Mutation p.D31Y 0.40 tolerated(0.09) possibly_damaging(0.73) TCGA-GN-A8LK-06 2 101185409 101185409 T A PDCL3 Missense_Mutation p.D50E 0.38 tolerated(0.22) benign(0.126) TCGA-GN-A8LK-06 2 10132174 10132174 G A GRHL1 Missense_Mutation p.R454Q 0.40 tolerated(0.14) possibly_damaging(0.714) TCGA-GN-A8LK-06 2 101889428 101889428 A G CNOT11 3'Flank 0.52 TCGA-GN-A8LK-06 2 101971805 101971805 T G CREG2 Missense_Mutation p.D212A 0.44 deleterious(0) probably_damaging(0.974) TCGA-GN-A8LK-06 2 102448249 102448249 C T MAP4K4 Missense_Mutation p.P192L 0.51 deleterious_low_confidence(0) unknown(0) TCGA-GN-A8LK-06 2 102968078 102968078 G A IL1RL1 Silent p.K456K 0.42 TCGA-GN-A8LK-06 2 103013314 103013314 C T IL18R1 Missense_Mutation p.P532S 0.59 tolerated(1) benign(0) TCGA-GN-A8LK-06 2 103095690 103095690 G A SLC9A4 Missense_Mutation p.E217K 0.49 tolerated(0.05) probably_damaging(0.931) TCGA-GN-A8LK-06 2 103281621 103281621 T C SLC9A2 Silent p.F272F 0.54 TCGA-GN-A8LK-06 2 107040465 107040465 C T RGPD3 Missense_Mutation p.E1320K 0.46 tolerated(0.15) possibly_damaging(0.563) TCGA-GN-A8LK-06 2 107041017 107041017 C T RGPD3 Missense_Mutation p.D1136N 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-GN-A8LK-06 2 109381214 109381214 C T RANBP2 Nonsense_Mutation p.R1407* 0.47 TCGA-GN-A8LK-06 2 109411073 109411073 C T CCDC138 Missense_Mutation p.P158S 0.43 tolerated(0.41) benign(0) TCGA-GN-A8LK-06 2 110303497 110303497 G A SEPT10 Intron 0.50 TCGA-GN-A8LK-06 2 111144845 111144845 G A LINC01106 5'Flank 0.23 TCGA-GN-A8LK-06 2 111851187 111851187 A G ACOXL Intron 0.29 TCGA-GN-A8LK-06 2 113675351 113675351 G A IL37 Silent p.L135L 0.54 TCGA-GN-A8LK-06 2 113783757 113783757 C T IL36B Missense_Mutation p.G105E 0.44 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-GN-A8LK-06 2 113830323 113830323 C T IL1F10 Missense_Mutation p.S3F 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-GN-A8LK-06 2 114391789 114391789 A G RABL2A Missense_Mutation p.D66G 0.40 tolerated(0.19) benign(0.029) TCGA-GN-A8LK-06 2 118677907 118677907 G A CCDC93 3'UTR 0.54 TCGA-GN-A8LK-06 2 119603883 119603883 G A EN1 Silent p.S287S 0.56 TCGA-GN-A8LK-06 2 120690014 120690014 C T PTPN4 Missense_Mutation p.P362L 0.32 tolerated(0.16) probably_damaging(0.945) TCGA-GN-A8LK-06 2 120885415 120885415 G A EPB41L5 Missense_Mutation p.V497I 0.45 tolerated(0.21) benign(0.002) TCGA-GN-A8LK-06 2 1243543 1243543 G A SNTG2 Missense_Mutation p.D295N 0.39 tolerated(0.08) benign(0.027) TCGA-GN-A8LK-06 2 125547512 125547512 G A CNTNAP5 Missense_Mutation p.G928E 0.65 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LK-06 2 128476958 128476958 G A WDR33 Missense_Mutation p.P881S 0.53 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-GN-A8LK-06 2 130832867 130832867 G A POTEF Silent p.A726A 0.30 TCGA-GN-A8LK-06 2 131975982 131975982 G A POTEE Missense_Mutation p.V3I 0.40 deleterious_low_confidence(0) benign(0) TCGA-GN-A8LK-06 2 132054511 132054511 C A CYP4F31P 3'Flank 0.27 TCGA-GN-A8LK-06 2 132274509 132274509 C T AC093838.4 RNA 0.38 TCGA-GN-A8LK-06 2 133541526 133541526 G A NCKAP5 Missense_Mutation p.S953F 0.38 deleterious(0.01) possibly_damaging(0.857) TCGA-GN-A8LK-06 2 135621059 135621059 G A ACMSD Missense_Mutation p.G115E 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 135621160 135621160 G A ACMSD Missense_Mutation p.E149K 0.42 tolerated(0.24) benign(0.001) TCGA-GN-A8LK-06 2 135711830 135711830 C T CCNT2 Missense_Mutation p.P602L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 2 135712242 135712242 C T CCNT2 3'UTR 0.41 TCGA-GN-A8LK-06 2 136570134 136570134 G A LCT Silent p.I700I 0.46 TCGA-GN-A8LK-06 2 136609013 136609013 G A MCM6 Missense_Mutation p.R626C 0.44 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 137872699 137872699 C T THSD7B Missense_Mutation p.S402F 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-GN-A8LK-06 2 137872759 137872759 C T THSD7B Missense_Mutation p.P422L 0.36 tolerated(0.35) possibly_damaging(0.851) TCGA-GN-A8LK-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.44 tolerated(0.95) unknown(0) TCGA-GN-A8LK-06 2 141110552 141110552 G A LRP1B Nonsense_Mutation p.Q3874* 0.43 TCGA-GN-A8LK-06 2 141250219 141250219 C T LRP1B Silent p.R3026R 0.51 TCGA-GN-A8LK-06 2 141459415 141459421 CTGCCAA - LRP1B Splice_Site p.X2101_splice 0.40 TCGA-GN-A8LK-06 2 141459811 141459811 G A LRP1B Silent p.I2067I 0.40 TCGA-GN-A8LK-06 2 141771140 141771140 G A LRP1B Missense_Mutation p.P789S 0.38 possibly_damaging(0.641) TCGA-GN-A8LK-06 2 143959724 143959724 C T ARHGAP15 Missense_Mutation p.H63Y 0.47 tolerated(1) benign(0.153) TCGA-GN-A8LK-06 2 1440033 1440033 C T TPO Missense_Mutation p.S120L 0.48 deleterious(0) benign(0.265) TCGA-GN-A8LK-06 2 149227075 149227075 C T MBD5 Silent p.I521I 0.46 TCGA-GN-A8LK-06 2 152326316 152326316 C T RIF1 Missense_Mutation p.P2345S 0.43 deleterious(0) probably_damaging(0.972) TCGA-GN-A8LK-06 2 152423765 152423765 G A NEB Missense_Mutation p.R6025C 0.51 probably_damaging(0.999) TCGA-GN-A8LK-06 2 152695793 152695793 C T CACNB4 Missense_Mutation p.R468Q 0.60 tolerated_low_confidence(0.49) benign(0.054) TCGA-GN-A8LK-06 2 153488635 153488635 G A FMNL2 Silent p.V888V 0.43 TCGA-GN-A8LK-06 2 155157995 155157995 C T GALNT13 Missense_Mutation p.P350L 0.46 deleterious(0.01) possibly_damaging(0.864) TCGA-GN-A8LK-06 2 155252603 155252603 G A GALNT13 Silent p.P419P 0.33 TCGA-GN-A8LK-06 2 155252604 155252604 G A GALNT13 Missense_Mutation p.D420N 0.33 deleterious(0.03) benign(0.055) TCGA-GN-A8LK-06 2 157439333 157439333 T C GPD2 Missense_Mutation p.V696A 0.49 deleterious(0.02) benign(0.41) TCGA-GN-A8LK-06 2 159028569 159028569 C T CCDC148 3'UTR 0.43 TCGA-GN-A8LK-06 2 160114285 160114285 C T WDSUB1 Silent p.L312L 0.41 TCGA-GN-A8LK-06 2 16085824 16085824 G A MYCN Missense_Mutation p.A334T 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 162833358 162833358 G A SLC4A10 Missense_Mutation p.D1106N 0.50 tolerated(0.54) unknown(0) TCGA-GN-A8LK-06 2 163130344 163130344 G A IFIH1 Silent p.I805I 0.43 TCGA-GN-A8LK-06 2 165551962 165551962 G A COBLL1 Missense_Mutation p.S685L 0.39 tolerated(0.49) benign(0.001) TCGA-GN-A8LK-06 2 165947220 165947220 C T SCN3A Missense_Mutation p.D1815N 0.49 tolerated(0.11) probably_damaging(0.997) TCGA-GN-A8LK-06 2 165970408 165970408 C T SCN3A Missense_Mutation p.R1196Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 2 166758360 166758360 G A TTC21B Missense_Mutation p.P877S 0.42 tolerated(0.1) benign(0.008) TCGA-GN-A8LK-06 2 167060555 167060555 A G SCN9A Missense_Mutation p.C1551R 0.47 deleterious(0) probably_damaging(0.993) TCGA-GN-A8LK-06 2 167138249 167138249 C T SCN9A Missense_Mutation p.D671N 0.43 deleterious(0.03) probably_damaging(0.926) TCGA-GN-A8LK-06 2 167322436 167322436 G A SCN7A Silent p.I242I 0.33 TCGA-GN-A8LK-06 2 168099616 168099616 G A XIRP2 Missense_Mutation p.G572R 0.49 probably_damaging(1) TCGA-GN-A8LK-06 2 168103769 168103769 C T XIRP2 Missense_Mutation p.S1956F 0.43 benign(0.022) TCGA-GN-A8LK-06 2 168104926 168104926 C T XIRP2 Missense_Mutation p.P2342S 0.38 possibly_damaging(0.723) TCGA-GN-A8LK-06 2 168106738 168106738 G A XIRP2 Missense_Mutation p.E2946K 0.52 probably_damaging(0.981) TCGA-GN-A8LK-06 2 171264338 171264338 C T MYO3B Silent p.I878I 0.48 TCGA-GN-A8LK-06 2 171902721 171902721 C G TLK1 Missense_Mutation p.E378Q 0.49 tolerated(0.13) possibly_damaging(0.548) TCGA-GN-A8LK-06 2 175094124 175094124 G A OLA1 Missense_Mutation p.P53S 0.46 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LK-06 2 179406267 179406267 G A TTN Missense_Mutation p.R32513C 0.47 TCGA-GN-A8LK-06 2 179431904 179431904 T C TTN Missense_Mutation p.I26319V 0.42 TCGA-GN-A8LK-06 2 179435231 179435231 C T TTN Missense_Mutation p.G25210R 0.57 TCGA-GN-A8LK-06 2 179438659 179438659 C T TTN Missense_Mutation p.G24067E 0.47 TCGA-GN-A8LK-06 2 179441428 179441428 C T TTN Silent p.K23181K 0.49 TCGA-GN-A8LK-06 2 179466123 179466123 C T TTN Missense_Mutation p.G18534E 0.49 TCGA-GN-A8LK-06 2 179500735 179500735 C T TTN Missense_Mutation p.E13855K 0.38 TCGA-GN-A8LK-06 2 179523482 179523482 T G TTN Missense_Mutation p.K12498T 0.56 TCGA-GN-A8LK-06 2 179534361 179534361 G A TTN Missense_Mutation p.R11810C 0.46 TCGA-GN-A8LK-06 2 179567353 179567353 G A TTN Silent p.I10087I 0.39 TCGA-GN-A8LK-06 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.50 TCGA-GN-A8LK-06 2 179569988 179569988 G A TTN Silent p.A9839A 0.48 TCGA-GN-A8LK-06 2 179578786 179578786 C T TTN Missense_Mutation p.G8867R 0.35 TCGA-GN-A8LK-06 2 179583636 179583636 G A TTN Silent p.F8097F 0.42 TCGA-GN-A8LK-06 2 179600793 179600793 G A TTN Missense_Mutation p.P4794S 0.43 TCGA-GN-A8LK-06 2 179616458 179616458 C T TTN Intron 0.54 TCGA-GN-A8LK-06 2 179633544 179633544 C T TTN Missense_Mutation p.E3007K 0.41 TCGA-GN-A8LK-06 2 179638965 179638965 C T TTN Silent p.G2342G 0.43 TCGA-GN-A8LK-06 2 179640514 179640514 G A TTN Missense_Mutation p.S2026F 0.51 TCGA-GN-A8LK-06 2 179641374 179641374 G A TTN Silent p.L1739L 0.50 TCGA-GN-A8LK-06 2 179641437 179641437 C T TTN Silent p.G1718G 0.48 TCGA-GN-A8LK-06 2 179647568 179647568 C T TTN Missense_Mutation p.G1022E 0.64 TCGA-GN-A8LK-06 2 17997809 17997809 C T MSGN1 Silent p.F8F 0.42 TCGA-GN-A8LK-06 2 180634312 180634312 G A ZNF385B Silent p.S57S 0.50 TCGA-GN-A8LK-06 2 182786972 182786972 C T SSFA2 Missense_Mutation p.P1170S 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-GN-A8LK-06 2 182786973 182786973 C T SSFA2 Missense_Mutation p.P1170L 0.38 deleterious(0.01) probably_damaging(0.967) TCGA-GN-A8LK-06 2 187693467 187693467 G A ZSWIM2 Silent p.C382C 0.61 TCGA-GN-A8LK-06 2 189854855 189854855 C T COL3A1 Nonsense_Mutation p.R242* 0.48 TCGA-GN-A8LK-06 2 189858775 189858775 G A COL3A1 Silent p.G387G 0.43 TCGA-GN-A8LK-06 2 189863013 189863013 C T COL3A1 Missense_Mutation p.P649S 0.33 unknown(0) TCGA-GN-A8LK-06 2 189899715 189899715 C T COL5A2 Missense_Mutation p.G1427E 0.46 unknown(0) TCGA-GN-A8LK-06 2 1915842 1915842 C T MYT1L Silent p.P551P 0.50 TCGA-GN-A8LK-06 2 196749415 196749415 C T DNAH7 Missense_Mutation p.R1886Q 0.46 tolerated(0.24) benign(0.001) TCGA-GN-A8LK-06 2 196749482 196749482 C T DNAH7 Missense_Mutation p.D1864N 0.44 tolerated(0.14) benign(0.004) TCGA-GN-A8LK-06 2 1983300 1983300 G A MYT1L Silent p.L28L 0.42 TCGA-GN-A8LK-06 2 201437625 201437625 T A SGOL2 Silent p.I852I 0.36 TCGA-GN-A8LK-06 2 201460056 201460056 G A AOX1 Missense_Mutation p.M55I 0.50 deleterious(0) benign(0.12) TCGA-GN-A8LK-06 2 202082498 202082498 G A CASP10 3'UTR 0.42 TCGA-GN-A8LK-06 2 202272272 202272272 A G TRAK2 Missense_Mutation p.L47P 0.42 deleterious(0) probably_damaging(0.981) TCGA-GN-A8LK-06 2 202547585 202547585 C T MPP4 Missense_Mutation p.G210E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 2 205978297 205978297 G A PARD3B Missense_Mutation p.G226R 0.35 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 206364664 206364664 G C PARD3B Missense_Mutation p.R968P 0.41 deleterious(0) probably_damaging(0.978) TCGA-GN-A8LK-06 2 207169729 207169729 G A ZDBF2 Silent p.V159V 0.23 TCGA-GN-A8LK-06 2 207174754 207174754 G A ZDBF2 Silent p.Q1834Q 0.37 TCGA-GN-A8LK-06 2 207176167 207176167 G A ZDBF2 Silent p.R2305R 0.43 TCGA-GN-A8LK-06 2 207459537 207459537 A T ADAM23 Missense_Mutation p.M719L 0.53 tolerated(0.31) benign(0.008) TCGA-GN-A8LK-06 2 207621644 207621644 G A MDH1B Missense_Mutation p.P131S 0.29 deleterious(0.01) benign(0.102) TCGA-GN-A8LK-06 2 207632153 207632153 C T FASTKD2 Nonsense_Mutation p.Q246* 0.49 TCGA-GN-A8LK-06 2 207655340 207655340 C T FASTKD2 Missense_Mutation p.S648L 0.50 tolerated(0.22) benign(0.083) TCGA-GN-A8LK-06 2 208134092 208134092 T C MIR1302-4 RNA 0.58 TCGA-GN-A8LK-06 2 209210844 209210844 C T PIKFYVE Missense_Mutation p.R1728C 0.48 deleterious(0.02) possibly_damaging(0.634) TCGA-GN-A8LK-06 2 210881344 210881344 C T RPE Silent p.F152F 0.43 TCGA-GN-A8LK-06 2 211082789 211082789 C T ACADL Missense_Mutation p.E91K 0.43 tolerated(0.73) benign(0.06) TCGA-GN-A8LK-06 2 21246480 21246480 C T APOB Missense_Mutation p.G841R 0.39 probably_damaging(1) TCGA-GN-A8LK-06 2 215440455 215440455 G A VWC2L Missense_Mutation p.E194K 0.45 tolerated(0.31) benign(0.059) TCGA-GN-A8LK-06 2 218696264 218696264 G A TNS1 Missense_Mutation p.S971F 0.26 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 2 219000254 219000254 G A CXCR2 Missense_Mutation p.G244R 0.50 tolerated(0.2) possibly_damaging(0.823) TCGA-GN-A8LK-06 2 219883835 219883835 G A CCDC108 Silent p.F1180F 0.56 TCGA-GN-A8LK-06 2 220115934 220115934 T C TUBA4A Missense_Mutation p.K163E 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A8LK-06 2 220422645 220422645 G A OBSL1 Silent p.L1230L 0.44 TCGA-GN-A8LK-06 2 220494022 220494022 C T SLC4A3 Missense_Mutation p.P125L 0.47 deleterious_low_confidence(0.05) benign(0.306) TCGA-GN-A8LK-06 2 222365864 222365864 G A EPHA4 Silent p.L284L 0.47 TCGA-GN-A8LK-06 2 228846410 228846410 G A SPHKAP 3'UTR 0.40 TCGA-GN-A8LK-06 2 228890245 228890245 C T SPHKAP Splice_Site p.X103_splice 0.44 TCGA-GN-A8LK-06 2 230282864 230282864 G A DNER Silent p.L523L 0.38 TCGA-GN-A8LK-06 2 230377642 230377642 G A DNER Missense_Mutation p.S335F 0.46 tolerated(1) benign(0.003) TCGA-GN-A8LK-06 2 232577943 232577943 T C PTMA 3'UTR 0.45 TCGA-GN-A8LK-06 2 233527540 233527540 G A EFHD1 Missense_Mutation p.D111N 0.47 deleterious(0.03) probably_damaging(1) TCGA-GN-A8LK-06 2 233684645 233684645 A G GIGYF2 Missense_Mutation p.R848G 0.46 unknown(0) TCGA-GN-A8LK-06 2 234601846 234601846 C T UGT1A6 Missense_Mutation p.L66F 0.49 tolerated(0.75) probably_damaging(0.993) TCGA-GN-A8LK-06 2 234839321 234839321 G A TRPM8 Silent p.V42V 0.46 TCGA-GN-A8LK-06 2 234978572 234978572 G A SPP2 Missense_Mutation p.G184E 0.35 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 2 237489126 237489126 C T ACKR3 Silent p.F6F 0.42 TCGA-GN-A8LK-06 2 238280370 238280370 C T COL6A3 Intron 0.46 TCGA-GN-A8LK-06 2 238999948 238999948 C T SCLY Intron 0.53 TCGA-GN-A8LK-06 2 241570392 241570392 G A GPR35 3'UTR 0.27 TCGA-GN-A8LK-06 2 241702162 241702162 T C KIF1A Missense_Mutation p.E697G 0.50 tolerated(0.13) benign(0.272) TCGA-GN-A8LK-06 2 242438727 242438727 C T STK25 Missense_Mutation p.G177D 0.33 deleterious(0) probably_damaging(0.986) TCGA-GN-A8LK-06 2 242438728 242438728 C T STK25 Missense_Mutation p.G177S 0.31 deleterious(0) probably_damaging(0.986) TCGA-GN-A8LK-06 2 242738478 242738478 A C GAL3ST2 Splice_Site p.X10_splice 0.58 TCGA-GN-A8LK-06 2 242814290 242814290 C T CXXC11 Missense_Mutation p.L195F 0.31 tolerated(0.83) benign(0.018) TCGA-GN-A8LK-06 2 25464476 25464476 C T DNMT3A Silent p.G679G 0.58 TCGA-GN-A8LK-06 2 25991711 25991711 C T ASXL2 Silent p.K177K 0.41 TCGA-GN-A8LK-06 2 26532117 26532117 G A GPR113 3'Flank 0.38 TCGA-GN-A8LK-06 2 27481037 27481037 T A SLC30A3 Missense_Mutation p.H139L 0.50 deleterious(0) possibly_damaging(0.665) TCGA-GN-A8LK-06 2 29296090 29296090 G A C2orf71 Silent p.C346C 0.38 TCGA-GN-A8LK-06 2 30986004 30986004 C T CAPN13 Missense_Mutation p.A240T 0.47 tolerated(0.56) benign(0.014) TCGA-GN-A8LK-06 2 31135140 31135140 G A GALNT14 Silent p.F488F 0.34 TCGA-GN-A8LK-06 2 31489265 31489265 G A EHD3 Missense_Mutation p.D435N 0.66 tolerated(0.25) benign(0.321) TCGA-GN-A8LK-06 2 31606655 31606655 G A XDH Silent p.I284I 0.61 TCGA-GN-A8LK-06 2 32249192 32249192 G A DPY30 3'UTR 0.67 TCGA-GN-A8LK-06 2 32445618 32445618 C T SLC30A6 Missense_Mutation p.P448S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-GN-A8LK-06 2 36775878 36775878 G A CRIM1 3'UTR 0.38 TCGA-GN-A8LK-06 2 36943553 36943553 G A VIT Missense_Mutation p.E14K 0.48 tolerated_low_confidence(0.08) benign(0.438) TCGA-GN-A8LK-06 2 37362671 37362671 A G EIF2AK2 Silent p.F247F 0.48 TCGA-GN-A8LK-06 2 39414801 39414801 G A CDKL4 Silent p.F234F 0.36 TCGA-GN-A8LK-06 2 40392086 40392086 C T SLC8A1 Missense_Mutation p.E693K 0.45 tolerated(0.1) benign(0.014) TCGA-GN-A8LK-06 2 40655858 40655858 G A SLC8A1 Silent p.L521L 0.51 TCGA-GN-A8LK-06 2 42886981 42886981 A G MTA3 Silent p.A227A 0.61 TCGA-GN-A8LK-06 2 47132473 47132473 G A MCFD2 3'UTR 0.43 TCGA-GN-A8LK-06 2 48873597 48873597 C T STON1-GTF2A1L Missense_Mutation p.L836F 0.42 deleterious(0.04) probably_damaging(1) TCGA-GN-A8LK-06 2 48915592 48915592 G A LHCGR Silent p.F448F 0.40 TCGA-GN-A8LK-06 2 49190214 49190214 G A FSHR Silent p.F582F 0.40 TCGA-GN-A8LK-06 2 55546089 55546089 G A CCDC88A Missense_Mutation p.L1071F 0.42 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 55831184 55831184 T C SMEK2 Missense_Mutation p.E76G 0.49 deleterious(0) benign(0.194) TCGA-GN-A8LK-06 2 56420553 56420553 G A CCDC85A Silent p.R406R 0.53 TCGA-GN-A8LK-06 2 63824599 63824599 C T MDH1 Missense_Mutation p.S107F 1.00 deleterious(0) possibly_damaging(0.904) TCGA-GN-A8LK-06 2 64819202 64819202 C T AFTPH 3'UTR 0.91 TCGA-GN-A8LK-06 2 68607612 68607612 G A PLEK Silent p.R65R 0.53 TCGA-GN-A8LK-06 2 69049684 69049684 G C ARHGAP25 Missense_Mutation p.W471C 0.51 deleterious(0.04) possibly_damaging(0.486) TCGA-GN-A8LK-06 2 69201767 69201767 C T GKN1 5'UTR 0.51 TCGA-GN-A8LK-06 2 71039588 71039588 C T CLEC4F Silent p.K510K 0.36 TCGA-GN-A8LK-06 2 71740949 71740949 G A DYSF Silent p.R219R 0.47 TCGA-GN-A8LK-06 2 71762403 71762403 C T DYSF Silent p.P485P 0.42 TCGA-GN-A8LK-06 2 71791284 71791284 C T DYSF Missense_Mutation p.R836W 0.48 deleterious(0) probably_damaging(0.972) TCGA-GN-A8LK-06 2 73302659 73302659 G A RAB11FIP5 Missense_Mutation p.P651L 0.46 tolerated_low_confidence(0.12) benign(0.014) TCGA-GN-A8LK-06 2 73677736 73677736 C T ALMS1 Missense_Mutation p.S1360L 0.52 benign(0.382) TCGA-GN-A8LK-06 2 73678348 73678348 C T ALMS1 Missense_Mutation p.T1564I 0.38 benign(0.25) TCGA-GN-A8LK-06 2 74042413 74042413 G A C2orf78 Missense_Mutation p.E355K 0.40 deleterious(0.02) benign(0.076) TCGA-GN-A8LK-06 2 74274790 74274790 C T TET3 Silent p.L447L 0.32 TCGA-GN-A8LK-06 2 74328925 74328925 G A TET3 Silent p.R1535R 0.58 TCGA-GN-A8LK-06 2 74755079 74755079 G A AUP1 Silent p.L242L 0.46 TCGA-GN-A8LK-06 2 74756410 74756410 C T AUP1 Splice_Site p.X63_splice 0.45 TCGA-GN-A8LK-06 2 74783119 74783119 C T DOK1 Missense_Mutation p.L185F 0.37 deleterious(0.04) probably_damaging(0.954) TCGA-GN-A8LK-06 2 80646667 80646667 G A CTNNA2 Missense_Mutation p.E411K 0.51 deleterious(0.01) benign(0.236) TCGA-GN-A8LK-06 2 85876072 85876072 C T USP39 3'UTR 0.51 TCGA-GN-A8LK-06 2 85876073 85876073 C T USP39 3'UTR 0.52 TCGA-GN-A8LK-06 2 87085350 87085350 C T CD8B Missense_Mutation p.G78E 0.49 tolerated(0.21) possibly_damaging(0.632) TCGA-GN-A8LK-06 2 88874676 88874676 A G EIF2AK3 Silent p.T775T 0.52 TCGA-GN-A8LK-06 2 88874677 88874677 G A EIF2AK3 Missense_Mutation p.T775I 0.51 tolerated(0.13) benign(0.003) TCGA-GN-A8LK-06 2 89265853 89265853 G A IGKV1-6 Silent p.F93F 0.54 TCGA-GN-A8LK-06 2 89399574 89399574 G A IGKV1-16 Silent p.I43I 0.53 TCGA-GN-A8LK-06 2 9013245 9013245 C A MBOAT2 Missense_Mutation p.W292C 0.52 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 2 96697824 96697824 G A GPAT2 Missense_Mutation p.P45L 0.18 deleterious(0) unknown(0) TCGA-GN-A8LK-06 2 96943395 96943395 G A SNRNP200 Missense_Mutation p.P1938L 0.44 tolerated(0.32) probably_damaging(0.996) TCGA-GN-A8LK-06 2 96952753 96952753 C T SNRNP200 Nonsense_Mutation p.W1210* 0.51 TCGA-GN-A8LK-06 3 100275683 100275683 C T TMEM45A Silent p.L90L 0.44 TCGA-GN-A8LK-06 3 102196341 102196341 C T ZPLD1 Missense_Mutation p.S392L 0.35 deleterious_low_confidence(0) benign(0.329) TCGA-GN-A8LK-06 3 10401714 10401714 C T ATP2B2 Missense_Mutation p.E585K 0.42 deleterious(0.04) benign(0.22) TCGA-GN-A8LK-06 3 10413595 10413595 G T ATP2B2 Silent p.V519V 0.43 TCGA-GN-A8LK-06 3 108095343 108095343 G A HHLA2 Missense_Mutation p.R388K 0.82 tolerated_low_confidence(0.48) benign(0) TCGA-GN-A8LK-06 3 108118111 108118111 C T MYH15 Silent p.R1600R 0.56 TCGA-GN-A8LK-06 3 108174589 108174589 G A MYH15 Silent p.I772I 0.59 TCGA-GN-A8LK-06 3 108205348 108205348 G A MYH15 Silent p.P319P 0.24 TCGA-GN-A8LK-06 3 108677766 108677766 C T MORC1 3'UTR 0.24 TCGA-GN-A8LK-06 3 108776284 108776284 C T MORC1 Missense_Mutation p.E361K 0.60 deleterious(0.01) benign(0.382) TCGA-GN-A8LK-06 3 109027055 109027055 C T DPPA2 Missense_Mutation p.R161K 0.56 tolerated(1) benign(0) TCGA-GN-A8LK-06 3 111427009 111427009 C T PLCXD2 Missense_Mutation p.L134F 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 3 111432904 111432904 G A PLCXD2 Silent p.A265A 0.37 TCGA-GN-A8LK-06 3 111775896 111775896 G A TMPRSS7 Missense_Mutation p.A284T 0.70 deleterious(0.03) possibly_damaging(0.746) TCGA-GN-A8LK-06 3 111821805 111821805 C T C3orf52 Missense_Mutation p.T130I 0.46 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-GN-A8LK-06 3 111849475 111849475 G A GCSAM Intron 0.64 TCGA-GN-A8LK-06 3 11301956 11301956 G A HRH1 Silent p.R411R 0.46 TCGA-GN-A8LK-06 3 113955663 113955663 G A ZNF80 Missense_Mutation p.P87S 0.23 tolerated(1) benign(0) TCGA-GN-A8LK-06 3 11712836 11712836 G A VGLL4 5'UTR 0.45 TCGA-GN-A8LK-06 3 119337005 119337005 C T PLA1A Silent p.N298N 0.45 TCGA-GN-A8LK-06 3 119887053 119887053 C T GPR156 Missense_Mutation p.G424E 0.29 tolerated(0.45) benign(0.093) TCGA-GN-A8LK-06 3 120347097 120347097 C T HGD 3'UTR 0.50 TCGA-GN-A8LK-06 3 120347165 120347165 G A HGD 3'UTR 0.67 TCGA-GN-A8LK-06 3 120469567 120469567 G A GTF2E1 Silent p.R56R 0.52 TCGA-GN-A8LK-06 3 120978011 120978011 G A STXBP5L Missense_Mutation p.G652R 0.56 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 3 121001159 121001159 G A STXBP5L Silent p.T719T 0.60 TCGA-GN-A8LK-06 3 121725923 121725923 G A ILDR1 Silent p.T48T 0.26 TCGA-GN-A8LK-06 3 122003796 122003796 G A CASR Missense_Mutation p.E1009K 0.76 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GN-A8LK-06 3 122423543 122423543 C T PARP14 Missense_Mutation p.T1163I 0.20 deleterious(0.03) benign(0.013) TCGA-GN-A8LK-06 3 122629720 122629720 C T SEMA5B Silent p.P1142P 0.54 TCGA-GN-A8LK-06 3 124237408 124237408 C T KALRN 3'UTR 0.41 TCGA-GN-A8LK-06 3 124951558 124951558 G A ZNF148 Missense_Mutation p.P671L 0.52 tolerated(0.46) benign(0.001) TCGA-GN-A8LK-06 3 126220115 126220115 C T UROC1 Missense_Mutation p.R364K 0.29 tolerated(0.72) possibly_damaging(0.487) TCGA-GN-A8LK-06 3 126224649 126224649 G A UROC1 Silent p.I236I 0.39 TCGA-GN-A8LK-06 3 128081017 128081017 C T EEFSEC Intron 0.40 TCGA-GN-A8LK-06 3 128707609 128707609 G A KIAA1257 Missense_Mutation p.P139S 0.34 tolerated(0.14) possibly_damaging(0.636) TCGA-GN-A8LK-06 3 129034750 129034750 G A H1FX 5'UTR 0.44 TCGA-GN-A8LK-06 3 129140427 129140427 A G EFCAB12 Missense_Mutation p.L90P 0.35 tolerated(0.24) benign(0.01) TCGA-GN-A8LK-06 3 129267902 129267902 C T H1FOO Missense_Mutation p.P146L 0.26 deleterious(0.02) benign(0.1) TCGA-GN-A8LK-06 3 129279205 129279205 C A PLXND1 Nonsense_Mutation p.E1701* 0.48 TCGA-GN-A8LK-06 3 130095535 130095535 G A COL6A5 Missense_Mutation p.E175K 0.17 tolerated(0.09) benign(0.012) TCGA-GN-A8LK-06 3 132051115 132051115 G A ACPP Missense_Mutation p.G128D 0.38 deleterious(0.02) benign(0.154) TCGA-GN-A8LK-06 3 132345585 132345585 G A ACAD11 Missense_Mutation p.L383F 0.41 tolerated(0.27) probably_damaging(0.971) TCGA-GN-A8LK-06 3 137822812 137822812 A G DZIP1L Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-GN-A8LK-06 3 138290114 138290114 G T CEP70 Missense_Mutation p.L52I 0.68 tolerated(0.14) benign(0.003) TCGA-GN-A8LK-06 3 138290115 138290115 A G CEP70 Silent p.D51D 0.69 TCGA-GN-A8LK-06 3 138762925 138762925 G A PRR23C Missense_Mutation p.P180S 0.24 tolerated(0.75) benign(0.077) TCGA-GN-A8LK-06 3 140123571 140123571 C T CLSTN2 Silent p.I200I 0.35 TCGA-GN-A8LK-06 3 141295856 141295856 C T RASA2 Nonsense_Mutation p.Q500* 0.54 TCGA-GN-A8LK-06 3 141535709 141535709 G A GRK7 Silent p.R493R 0.53 TCGA-GN-A8LK-06 3 1418745 1418745 G C CNTN6 Missense_Mutation p.V718L 0.53 deleterious(0.02) benign(0.09) TCGA-GN-A8LK-06 3 14220160 14220160 C T LSM3 5'UTR 0.56 TCGA-GN-A8LK-06 3 14558679 14558679 G A GRIP2 RNA 0.45 TCGA-GN-A8LK-06 3 14756895 14756895 C T C3orf20 Silent p.T471T 0.50 TCGA-GN-A8LK-06 3 148614316 148614316 C T CPA3 Missense_Mutation p.S359L 0.52 deleterious(0) possibly_damaging(0.486) TCGA-GN-A8LK-06 3 150280362 150280362 A T EIF2A Silent p.L69L 0.56 TCGA-GN-A8LK-06 3 150645788 150645788 G A CLRN1 Nonsense_Mutation p.Q225* 0.32 TCGA-GN-A8LK-06 3 151161345 151161345 G A IGSF10 Missense_Mutation p.A1797V 0.71 tolerated(0.89) benign(0.1) TCGA-GN-A8LK-06 3 151164166 151164166 C T IGSF10 Silent p.R1201R 0.39 TCGA-GN-A8LK-06 3 151597692 151597692 C T SUCNR1 Silent p.I4I 0.32 TCGA-GN-A8LK-06 3 153935723 153935723 C T ARHGEF26 Silent p.N637N 0.39 TCGA-GN-A8LK-06 3 154856002 154856002 G A MME Missense_Mutation p.E278K 0.35 tolerated(0.26) benign(0.016) TCGA-GN-A8LK-06 3 155241754 155241754 C T PLCH1 Missense_Mutation p.E456K 0.30 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 3 156396153 156396153 G C TIPARP Missense_Mutation p.V223L 0.38 tolerated(0.1) benign(0.187) TCGA-GN-A8LK-06 3 160968637 160968637 T G NMD3 Missense_Mutation p.L484R 0.67 deleterious(0) possibly_damaging(0.845) TCGA-GN-A8LK-06 3 161221350 161221358 CCATTTCCT - OTOL1 In_Frame_Del p.F353_P355del 0.36 TCGA-GN-A8LK-06 3 161221373 161221373 C T OTOL1 Silent p.P359P 0.32 TCGA-GN-A8LK-06 3 16336471 16336471 G A OXNAD1 Silent p.T133T 0.60 TCGA-GN-A8LK-06 3 164786524 164786524 G A SI Missense_Mutation p.R157C 0.54 deleterious(0) probably_damaging(0.993) TCGA-GN-A8LK-06 3 16639634 16639634 C T DAZL Missense_Mutation p.E88K 0.41 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 3 17051468 17051468 C T PLCL2 Silent p.D84D 0.36 TCGA-GN-A8LK-06 3 172643184 172643184 C T SPATA16 Missense_Mutation p.G394R 0.39 deleterious(0.03) probably_damaging(0.979) TCGA-GN-A8LK-06 3 17413739 17413739 C T TBC1D5 Missense_Mutation p.G275R 0.56 tolerated(0.14) benign(0.217) TCGA-GN-A8LK-06 3 179096514 179096514 C T MFN1 Missense_Mutation p.S525F 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 3 183145830 183145830 G A MCF2L2 5'UTR 0.41 TCGA-GN-A8LK-06 3 184100685 184100685 G A CHRD Missense_Mutation p.G342R 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A8LK-06 3 184911140 184911140 G A EHHADH Missense_Mutation p.S349F 0.57 deleterious(0.05) benign(0.012) TCGA-GN-A8LK-06 3 185234898 185234898 C T LIPH Missense_Mutation p.M313I 0.31 tolerated(0.4) benign(0.008) TCGA-GN-A8LK-06 3 185252786 185252786 A G LIPH Missense_Mutation p.F62L 0.59 tolerated(0.66) benign(0.002) TCGA-GN-A8LK-06 3 185434378 185434378 G A C3orf65 Missense_Mutation p.E71K 0.70 tolerated_low_confidence(0.47) possibly_damaging(0.486) TCGA-GN-A8LK-06 3 186395131 186395131 C T HRG Missense_Mutation p.S346F 0.53 deleterious(0.05) possibly_damaging(0.485) TCGA-GN-A8LK-06 3 186947675 186947675 G A MASP1 3'Flank 0.27 TCGA-GN-A8LK-06 3 187416741 187416741 G A RTP2 Missense_Mutation p.H75Y 0.58 deleterious(0) probably_damaging(0.966) TCGA-GN-A8LK-06 3 189607225 189607225 C T TP63 Missense_Mutation p.S535F 0.36 deleterious(0) possibly_damaging(0.691) TCGA-GN-A8LK-06 3 189608611 189608611 G A TP63 Silent p.L562L 0.42 TCGA-GN-A8LK-06 3 191888303 191888303 C T FGF12 Missense_Mutation p.G186E 0.65 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 3 192973567 192973567 T A HRASLS Missense_Mutation p.I148K 0.28 deleterious(0.01) benign(0.084) TCGA-GN-A8LK-06 3 193158357 193158357 G A ATP13A4 Nonsense_Mutation p.Q837* 0.48 TCGA-GN-A8LK-06 3 193182879 193182879 G A ATP13A4 Silent p.V437V 0.65 TCGA-GN-A8LK-06 3 194117215 194117215 G A GP5 3'UTR 0.67 TCGA-GN-A8LK-06 3 194392964 194392964 G A LSG1 5'UTR 0.38 TCGA-GN-A8LK-06 3 195517237 195517237 C T MUC4 Missense_Mutation p.G405E 0.25 unknown(0) TCGA-GN-A8LK-06 3 196613177 196613177 C A SENP5 Silent p.I375I 0.54 TCGA-GN-A8LK-06 3 21467063 21467063 C T ZNF385D Missense_Mutation p.G258E 0.41 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LK-06 3 24174891 24174891 T C THRB Silent p.E267E 0.45 TCGA-GN-A8LK-06 3 3081732 3081732 G A CNTN4 Silent p.E725E 0.37 TCGA-GN-A8LK-06 3 3081733 3081733 G A CNTN4 Missense_Mutation p.E726K 0.37 deleterious(0.03) possibly_damaging(0.688) TCGA-GN-A8LK-06 3 30891538 30891538 C T GADL1 Missense_Mutation p.E201K 0.50 tolerated(0.71) benign(0.043) TCGA-GN-A8LK-06 3 36869790 36869790 T A TRANK1 Missense_Mutation p.K2918N 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GN-A8LK-06 3 36898404 36898404 C T TRANK1 Missense_Mutation p.E893K 0.56 deleterious(0) probably_damaging(0.967) TCGA-GN-A8LK-06 3 38597231 38597231 G A SCN5A Silent p.F1486F 0.46 TCGA-GN-A8LK-06 3 38601711 38601711 C T SCN5A Missense_Mutation p.G1391E 0.62 tolerated(0.08) probably_damaging(1) TCGA-GN-A8LK-06 3 38622627 38622627 G A SCN5A Missense_Mutation p.P1008L 0.44 tolerated(0.33) benign(0.06) TCGA-GN-A8LK-06 3 38755548 38755548 C T SCN10A Silent p.A1235A 0.41 TCGA-GN-A8LK-06 3 38764919 38764919 A C SCN10A Splice_Site p.X1118_splice 0.42 TCGA-GN-A8LK-06 3 3886838 3886838 G A LRRN1 Silent p.R171R 0.38 TCGA-GN-A8LK-06 3 38888724 38888724 C T SCN11A Missense_Mutation p.E1613K 0.53 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 3 38945362 38945362 C T SCN11A Silent p.G612G 0.42 TCGA-GN-A8LK-06 3 38945363 38945363 C T SCN11A Missense_Mutation p.G612E 0.55 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 3 39184705 39184705 G A CSRNP1 Silent p.F537F 0.32 TCGA-GN-A8LK-06 3 39225777 39225777 C T XIRP1 Silent p.G1720G 0.53 TCGA-GN-A8LK-06 3 40503630 40503630 C T RPL14 Silent p.G185G 0.62 TCGA-GN-A8LK-06 3 40503631 40503631 C T RPL14 Nonsense_Mutation p.Q186* 0.63 TCGA-GN-A8LK-06 3 42729704 42729704 G A KLHL40 Missense_Mutation p.G408E 0.57 deleterious(0.01) possibly_damaging(0.58) TCGA-GN-A8LK-06 3 42916478 42916478 G A CYP8B1 Silent p.F277F 0.68 TCGA-GN-A8LK-06 3 42956211 42956211 G A ZNF662 Missense_Mutation p.G242R 0.49 tolerated(0.06) possibly_damaging(0.85) TCGA-GN-A8LK-06 3 44763222 44763222 C T ZNF502 Nonsense_Mutation p.R305* 0.38 TCGA-GN-A8LK-06 3 44951651 44951651 G A TGM4 Missense_Mutation p.R466Q 0.52 tolerated(0.55) benign(0.039) TCGA-GN-A8LK-06 3 44952477 44952477 C A TGM4 Missense_Mutation p.S545Y 0.40 deleterious(0) benign(0.021) TCGA-GN-A8LK-06 3 45038727 45038727 C T EXOSC7 Missense_Mutation p.L135F 0.51 deleterious(0) probably_damaging(0.925) TCGA-GN-A8LK-06 3 45817476 45817476 G A SLC6A20 Missense_Mutation p.P120L 0.53 deleterious(0.01) possibly_damaging(0.792) TCGA-GN-A8LK-06 3 46450207 46450207 C T CCRL2 Silent p.L225L 0.49 TCGA-GN-A8LK-06 3 46940862 46940862 G A PTH1R Missense_Mutation p.E302K 0.49 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 3 47045713 47045713 C T NBEAL2 Missense_Mutation p.P2010S 0.53 tolerated(0.87) benign(0) TCGA-GN-A8LK-06 3 4715055 4715055 G A ITPR1 Missense_Mutation p.E799K 0.46 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 3 4741565 4741565 C T ITPR1 Silent p.V1477V 0.44 TCGA-GN-A8LK-06 3 48619192 48619192 C T COL7A1 Missense_Mutation p.G1557R 0.44 unknown(0) TCGA-GN-A8LK-06 3 48732674 48732674 G A IP6K2 Silent p.V17V 0.45 TCGA-GN-A8LK-06 3 49016992 49016992 C T ARIH2 Missense_Mutation p.P347S 0.41 deleterious(0.02) benign(0.195) TCGA-GN-A8LK-06 3 49050660 49050662 TCT CC WDR6 Frame_Shift_Del p.S595Pfs*8 0.34 TCGA-GN-A8LK-06 3 50307585 50307585 C T SEMA3B-AS1 5'Flank 0.50 TCGA-GN-A8LK-06 3 50418214 50418214 C T CACNA2D2 Silent p.K269K 0.27 TCGA-GN-A8LK-06 3 51673538 51673538 C T RAD54L2 Missense_Mutation p.A655V 0.60 tolerated(0.25) benign(0.007) TCGA-GN-A8LK-06 3 51738012 51738012 C T TEX264 Missense_Mutation p.P308S 0.37 tolerated_low_confidence(0.16) possibly_damaging(0.788) TCGA-GN-A8LK-06 3 51738036 51738036 A T TEX264 3'UTR 0.65 TCGA-GN-A8LK-06 3 51864573 51864573 G A IQCF3 Missense_Mutation p.R74Q 0.38 tolerated(0.84) benign(0) TCGA-GN-A8LK-06 3 51929167 51929167 C T IQCF1 Silent p.E119E 0.48 TCGA-GN-A8LK-06 3 52257257 52257257 A T TLR9 Missense_Mutation p.S513T 0.50 tolerated(0.37) probably_damaging(0.95) TCGA-GN-A8LK-06 3 52474411 52474411 G A SEMA3G Silent p.P375P 0.50 TCGA-GN-A8LK-06 3 52476771 52476771 G A SEMA3G Missense_Mutation p.P90S 0.45 tolerated(0.46) benign(0.021) TCGA-GN-A8LK-06 3 52538077 52538077 G A STAB1 Silent p.G352G 0.45 TCGA-GN-A8LK-06 3 52538520 52538520 C T STAB1 Silent p.T398T 0.57 TCGA-GN-A8LK-06 3 53226287 53226287 C T PRKCD 3'UTR 0.34 TCGA-GN-A8LK-06 3 53898772 53898772 G C IL17RB Splice_Site p.X316_splice 0.49 TCGA-GN-A8LK-06 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.49 TCGA-GN-A8LK-06 3 54913067 54913067 G A CACNA2D3 Missense_Mutation p.R578Q 0.24 tolerated(0.44) probably_damaging(0.99) TCGA-GN-A8LK-06 3 54914840 54914840 C T CACNA2D3 Missense_Mutation p.S621F 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A8LK-06 3 54958704 54958704 C T LRTM1 Nonsense_Mutation p.W182* 0.55 TCGA-GN-A8LK-06 3 55021780 55021780 G A CACNA2D3 Missense_Mutation p.R897K 0.35 tolerated(0.34) benign(0.009) TCGA-GN-A8LK-06 3 56468947 56468947 C T ERC2 Missense_Mutation p.R30Q 0.59 deleterious(0.02) probably_damaging(0.945) TCGA-GN-A8LK-06 3 57132381 57132381 G A IL17RD Silent p.F450F 0.53 TCGA-GN-A8LK-06 3 58899437 58899437 C G C3orf67 Missense_Mutation p.D58H 0.31 deleterious(0) probably_damaging(0.952) TCGA-GN-A8LK-06 3 58899438 58899438 C T C3orf67 Silent p.K57K 0.32 TCGA-GN-A8LK-06 3 65377020 65377020 C T MAGI1 Missense_Mutation p.R738K 0.43 tolerated(0.14) possibly_damaging(0.907) TCGA-GN-A8LK-06 3 68593678 68593678 G A FAM19A1 3'UTR 0.35 TCGA-GN-A8LK-06 3 69026643 69026643 A G EOGT 3'UTR 0.33 TCGA-GN-A8LK-06 3 69231808 69231810 TCC - FRMD4B In_Frame_Del p.G660del 0.55 TCGA-GN-A8LK-06 3 69244225 69244225 C T FRMD4B Missense_Mutation p.R479K 0.55 tolerated(0.18) benign(0.032) TCGA-GN-A8LK-06 3 71804063 71804063 C T GPR27 Missense_Mutation p.A288V 0.27 tolerated(0.99) benign(0.013) TCGA-GN-A8LK-06 3 73024267 73024267 A T GXYLT2 Missense_Mutation p.E430V 0.44 deleterious(0.01) probably_damaging(0.943) TCGA-GN-A8LK-06 3 7620861 7620861 C T GRM7 Silent p.I756I 0.42 TCGA-GN-A8LK-06 3 8794789 8794789 G A OXTR Silent p.S348S 0.38 TCGA-GN-A8LK-06 3 89391074 89391074 C T EPHA3 Silent p.V380V 0.40 TCGA-GN-A8LK-06 3 8940587 8940587 G A RAD18 Missense_Mutation p.S438L 0.41 tolerated(0.06) possibly_damaging(0.893) TCGA-GN-A8LK-06 3 89480397 89480397 G A EPHA3 Missense_Mutation p.R745Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 3 96963250 96963250 A C EPHA6 Intron 0.36 TCGA-GN-A8LK-06 3 9756628 9756628 C A CPNE9 Missense_Mutation p.D227E 0.40 deleterious(0.02) probably_damaging(0.925) TCGA-GN-A8LK-06 3 97851588 97851588 G A OR5H1 Missense_Mutation p.G16E 0.31 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 3 97852346 97852346 G A OR5H1 Missense_Mutation p.D269N 0.41 tolerated(0.17) benign(0.026) TCGA-GN-A8LK-06 3 97887907 97887907 C T OR5H15 Missense_Mutation p.R122C 0.57 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 3 97983916 97983916 C T OR5H6 Missense_Mutation p.S263F 0.33 deleterious(0) possibly_damaging(0.548) TCGA-GN-A8LK-06 3 9799145 9799145 C T CAMK1 3'UTR 0.58 TCGA-GN-A8LK-06 4 100268928 100268928 G A ADH1C Missense_Mutation p.P32S 0.93 probably_damaging(1) TCGA-GN-A8LK-06 4 104070002 104070002 T G CENPE Missense_Mutation p.E1281A 1.00 benign(0.034) TCGA-GN-A8LK-06 4 10447665 10447665 G A ZNF518B Silent p.P96P 0.50 TCGA-GN-A8LK-06 4 110687748 110687748 C T CFI Missense_Mutation p.G97E 0.93 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 4 110864522 110864522 G A EGF Missense_Mutation p.G147E 0.92 deleterious(0.04) possibly_damaging(0.601) TCGA-GN-A8LK-06 4 110865119 110865119 G A EGF Missense_Mutation p.D211N 0.95 tolerated(0.2) benign(0.008) TCGA-GN-A8LK-06 4 111470973 111470973 C T ENPEP Missense_Mutation p.S811L 0.91 deleterious(0.02) benign(0.03) TCGA-GN-A8LK-06 4 114279820 114279820 C T ANK2 Missense_Mutation p.P3349L 0.95 probably_damaging(1) TCGA-GN-A8LK-06 4 123536859 123536859 C T IL21 Missense_Mutation p.G113E 0.98 tolerated(0.18) benign(0.017) TCGA-GN-A8LK-06 4 128637508 128637508 G A INTU Missense_Mutation p.E916K 0.88 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 4 13601143 13601143 C T BOD1L1 Missense_Mutation p.E2461K 0.51 benign(0.007) TCGA-GN-A8LK-06 4 145039905 145039905 C T GYPA Missense_Mutation p.G78E 0.96 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 4 146695734 146695734 C T ZNF827 Silent p.S928S 0.87 TCGA-GN-A8LK-06 4 147431156 147431156 G A SLC10A7 Nonsense_Mutation p.Q77* 0.92 TCGA-GN-A8LK-06 4 151114356 151114356 C T DCLK2 Missense_Mutation p.R275C 0.91 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 4 15511841 15511841 G A CC2D2A Missense_Mutation p.R173Q 0.33 tolerated_low_confidence(0.13) benign(0.013) TCGA-GN-A8LK-06 4 155241724 155241724 C T DCHS2 Silent p.V1154V 0.90 TCGA-GN-A8LK-06 4 155298410 155298410 C T DCHS2 Missense_Mutation p.D141N 0.96 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A8LK-06 4 155749297 155749297 T C RBM46 3'UTR 0.96 TCGA-GN-A8LK-06 4 156715026 156715026 G A GUCY1B3 Missense_Mutation p.E172K 0.89 tolerated(0.15) benign(0.012) TCGA-GN-A8LK-06 4 15937902 15937902 C T FGFBP1 Silent p.R118R 0.47 TCGA-GN-A8LK-06 4 164246417 164246417 A T NPY1R 3'UTR 0.94 TCGA-GN-A8LK-06 4 16504193 16504193 C T LDB2 3'UTR 0.45 TCGA-GN-A8LK-06 4 166231852 166231852 C T KLHL2 Missense_Mutation p.A400V 0.93 deleterious(0.03) possibly_damaging(0.68) TCGA-GN-A8LK-06 4 166403426 166403426 G A CPE Nonsense_Mutation p.W235* 0.95 TCGA-GN-A8LK-06 4 169362592 169362592 C T DDX60L Nonsense_Mutation p.W397* 0.91 TCGA-GN-A8LK-06 4 170601278 170601278 C T CLCN3 Missense_Mutation p.P80S 0.94 tolerated(0.05) probably_damaging(0.995) TCGA-GN-A8LK-06 4 175580304 175580304 G A GLRA3 Silent p.L324L 0.92 TCGA-GN-A8LK-06 4 17590510 17590510 C T LAP3 Missense_Mutation p.P258L 0.41 deleterious(0.03) probably_damaging(0.96) TCGA-GN-A8LK-06 4 177608561 177608561 C T VEGFC Missense_Mutation p.E309K 0.94 tolerated(0.75) possibly_damaging(0.742) TCGA-GN-A8LK-06 4 183674704 183674704 G A TENM3 Missense_Mutation p.D1322N 0.86 tolerated(0.08) benign(0.033) TCGA-GN-A8LK-06 4 184931631 184931631 C T STOX2 Missense_Mutation p.S547L 0.91 tolerated(0.06) benign(0) TCGA-GN-A8LK-06 4 185310042 185310042 G A IRF2 Missense_Mutation p.P307L 0.97 tolerated(0.45) benign(0) TCGA-GN-A8LK-06 4 186545457 186545457 C T SORBS2 Missense_Mutation p.E472K 0.92 tolerated(0.1) probably_damaging(0.996) TCGA-GN-A8LK-06 4 187455192 187455192 C T MTNR1A Missense_Mutation p.R235K 0.98 deleterious(0.02) benign(0.1) TCGA-GN-A8LK-06 4 187524787 187524787 G A FAT1 Silent p.I3631I 0.88 TCGA-GN-A8LK-06 4 20525487 20525487 C T SLIT2 Missense_Mutation p.A412V 0.43 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 4 20533652 20533652 C T SLIT2 Silent p.I553I 0.44 TCGA-GN-A8LK-06 4 21305451 21305451 G A KCNIP4 Intron 0.42 TCGA-GN-A8LK-06 4 23797468 23797468 C T PPARGC1A Missense_Mutation p.A792T 0.31 deleterious(0) unknown(0) TCGA-GN-A8LK-06 4 23891695 23891695 T C PPARGC1A 5'UTR 0.53 TCGA-GN-A8LK-06 4 25834663 25834663 G A SEL1L3 Missense_Mutation p.P351L 0.45 deleterious(0) probably_damaging(0.992) TCGA-GN-A8LK-06 4 26483156 26483156 C T CCKAR 3'UTR 0.47 TCGA-GN-A8LK-06 4 26483310 26483310 G A CCKAR Silent p.L413L 0.41 TCGA-GN-A8LK-06 4 2692515 2692515 G A FAM193A Missense_Mutation p.S583N 0.47 tolerated(0.39) benign(0.003) TCGA-GN-A8LK-06 4 27010619 27010619 T A STIM2 Missense_Mutation p.F503Y 0.39 tolerated(0.2) possibly_damaging(0.718) TCGA-GN-A8LK-06 4 2831389 2831389 G A SH3BP2 Silent p.E309E 0.47 TCGA-GN-A8LK-06 4 3444590 3444590 C T HGFAC Silent p.L83L 0.49 TCGA-GN-A8LK-06 4 36118704 36118704 G C ARAP2 Silent p.P1339P 0.39 TCGA-GN-A8LK-06 4 38775811 38775811 G T TLR10 Silent p.A467A 0.42 TCGA-GN-A8LK-06 4 39310276 39310276 G A RFC1 Missense_Mutation p.S622F 0.44 tolerated(0.1) benign(0.007) TCGA-GN-A8LK-06 4 39310585 39310585 G A RFC1 Missense_Mutation p.P519L 0.48 deleterious(0.02) benign(0.02) TCGA-GN-A8LK-06 4 39435997 39435997 C T KLB Silent p.A331A 0.39 TCGA-GN-A8LK-06 4 40356229 40356229 C T CHRNA9 Missense_Mutation p.P378S 0.50 tolerated(0.56) benign(0.016) TCGA-GN-A8LK-06 4 40427904 40427904 C T RBM47 3'UTR 0.50 TCGA-GN-A8LK-06 4 42072598 42072598 G C SLC30A9 Missense_Mutation p.M436I 0.41 tolerated(0.11) benign(0) TCGA-GN-A8LK-06 4 42145617 42145617 A G BEND4 Silent p.T294T 0.46 TCGA-GN-A8LK-06 4 42145871 42145871 C T BEND4 Missense_Mutation p.E210K 0.32 tolerated_low_confidence(0.11) possibly_damaging(0.905) TCGA-GN-A8LK-06 4 42592859 42592859 G A ATP8A1 Missense_Mutation p.L165F 0.44 tolerated(1) benign(0.301) TCGA-GN-A8LK-06 4 46060605 46060605 C T GABRG1 Nonsense_Mutation p.W220* 0.46 TCGA-GN-A8LK-06 4 46314541 46314541 C T GABRA2 Missense_Mutation p.D150N 0.39 tolerated(0.63) possibly_damaging(0.9) TCGA-GN-A8LK-06 4 47746577 47746577 G A CORIN Missense_Mutation p.S214F 0.52 deleterious(0) probably_damaging(0.981) TCGA-GN-A8LK-06 4 48887481 48887481 G A OCIAD2 3'UTR 0.44 TCGA-GN-A8LK-06 4 55153705 55153705 C T PDGFRA Missense_Mutation p.L891F 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 4 55946181 55946181 C T KDR Missense_Mutation p.G1333E 0.47 tolerated(0.14) benign(0.004) TCGA-GN-A8LK-06 4 55964326 55964326 G A KDR Silent p.F829F 0.41 TCGA-GN-A8LK-06 4 55968619 55968619 C T KDR Missense_Mutation p.E682K 0.47 deleterious(0.04) probably_damaging(0.932) TCGA-GN-A8LK-06 4 56878146 56878146 C T CEP135 Nonsense_Mutation p.Q933* 0.53 TCGA-GN-A8LK-06 4 57514801 57514801 T C HOPX 3'UTR 0.44 TCGA-GN-A8LK-06 4 62801762 62801762 T C LPHN3 Silent p.N738N 0.90 TCGA-GN-A8LK-06 4 69344690 69344690 G A TMPRSS11E Missense_Mutation p.G364E 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 4 69816917 69816917 G A UGT2A3 Missense_Mutation p.P188S 0.45 deleterious(0.01) probably_damaging(0.913) TCGA-GN-A8LK-06 4 70080466 70080466 C T UGT2B11 5'Flank 0.51 TCGA-GN-A8LK-06 4 70513070 70513070 C T UGT2A1 Missense_Mutation p.R98K 0.54 tolerated(0.34) benign(0.326) TCGA-GN-A8LK-06 4 70707665 70707665 G A SULT1E1 3'UTR 0.55 TCGA-GN-A8LK-06 4 70802314 70802314 G A CSN1S1 Missense_Mutation p.D62N 0.41 tolerated(0.29) benign(0.001) TCGA-GN-A8LK-06 4 71347399 71347399 C T MUC7 Missense_Mutation p.S313F 0.50 deleterious(0.05) unknown(0) TCGA-GN-A8LK-06 4 71347567 71347567 G A MUC7 Missense_Mutation p.R369K 0.37 tolerated_low_confidence(0.69) unknown(0) TCGA-GN-A8LK-06 4 72120988 72120988 G A SLC4A4 Missense_Mutation p.R42K 0.45 tolerated(0.28) benign(0.021) TCGA-GN-A8LK-06 4 74283259 74283259 G C ALB Missense_Mutation p.R434P 0.51 deleterious(0.01) probably_damaging(0.988) TCGA-GN-A8LK-06 4 74367547 74367547 G A AFM Missense_Mutation p.E564K 0.45 tolerated(0.1) benign(0.038) TCGA-GN-A8LK-06 4 74442405 74442405 C T RASSF6 Silent p.R287R 0.46 TCGA-GN-A8LK-06 4 74719519 74719519 G A PF4V1 Silent p.G40G 0.56 TCGA-GN-A8LK-06 4 76711331 76711331 G A USO1 Missense_Mutation p.R344Q 0.30 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LK-06 4 76711342 76711342 G A USO1 Missense_Mutation p.V348I 0.30 tolerated(0.23) benign(0.008) TCGA-GN-A8LK-06 4 76805790 76805790 G A PPEF2 Missense_Mutation p.H235Y 0.45 tolerated(0.12) probably_damaging(0.966) TCGA-GN-A8LK-06 4 77020257 77020257 C T ART3 Intron 0.57 TCGA-GN-A8LK-06 4 77134763 77134763 G A SCARB2 5'UTR 0.64 TCGA-GN-A8LK-06 4 77816807 77816807 G A SOWAHB Silent p.F732F 0.50 TCGA-GN-A8LK-06 4 79158678 79158678 G A FRAS1 Nonsense_Mutation p.W41* 0.42 TCGA-GN-A8LK-06 4 79291018 79291018 G A FRAS1 Missense_Mutation p.D917N 0.46 benign(0.347) TCGA-GN-A8LK-06 4 79396728 79396728 G A FRAS1 Missense_Mutation p.G2607R 0.46 probably_damaging(0.99) TCGA-GN-A8LK-06 4 82031632 82031632 C T PRKG2 Missense_Mutation p.G637E 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 4 8229771 8229771 C T SH3TC1 Silent p.L784L 0.49 TCGA-GN-A8LK-06 4 83765419 83765419 A - SEC31A Intron 0.38 TCGA-GN-A8LK-06 4 84350812 84350812 G A HELQ Missense_Mutation p.L795F 0.49 deleterious(0.01) benign(0.078) TCGA-GN-A8LK-06 4 86863346 86863346 C T ARHGAP24 Silent p.L173L 0.40 TCGA-GN-A8LK-06 4 87706488 87706488 G A PTPN13 Missense_Mutation p.E2080K 0.36 tolerated(0.43) benign(0.01) TCGA-GN-A8LK-06 4 87726459 87726459 C T PTPN13 Nonsense_Mutation p.Q2233* 0.43 TCGA-GN-A8LK-06 4 88106503 88106503 A G KLHL8 Missense_Mutation p.L222P 0.46 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 4 88106504 88106504 G A KLHL8 Silent p.L222L 0.47 TCGA-GN-A8LK-06 4 89588623 89588623 C A HERC3 Missense_Mutation p.S476Y 0.97 deleterious(0.02) possibly_damaging(0.794) TCGA-GN-A8LK-06 4 96163655 96163655 G A UNC5C Missense_Mutation p.P345S 0.95 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 5 102509559 102509559 T C PPIP5K2 Intron 0.95 TCGA-GN-A8LK-06 5 112173394 112173394 G - APC Frame_Shift_Del p.A703Qfs*15 0.50 TCGA-GN-A8LK-06 5 112174232 112174232 C T APC Missense_Mutation p.P981S 0.94 probably_damaging(0.987) TCGA-GN-A8LK-06 5 112769844 112769844 G A TSSK1B Silent p.H231H 0.95 TCGA-GN-A8LK-06 5 112770620 112770620 G A TSSK1B 5'UTR 1.00 TCGA-GN-A8LK-06 5 118824891 118824891 T A HSD17B4 Silent p.L234L 0.97 TCGA-GN-A8LK-06 5 128359396 128359396 G A SLC27A6 Silent p.V416V 0.35 TCGA-GN-A8LK-06 5 128368799 128368799 G A SLC27A6 Missense_Mutation p.E562K 0.47 tolerated(0.06) benign(0.015) TCGA-GN-A8LK-06 5 128368934 128368934 G A SLC27A6 Missense_Mutation p.E607K 0.50 deleterious(0.04) benign(0.23) TCGA-GN-A8LK-06 5 131307292 131307292 G A ACSL6 Missense_Mutation p.P462L 0.38 deleterious(0) possibly_damaging(0.856) TCGA-GN-A8LK-06 5 132094354 132094354 G A SEPT8 Intron 0.46 TCGA-GN-A8LK-06 5 132537660 132537660 G A FSTL4 Silent p.F597F 0.40 TCGA-GN-A8LK-06 5 1335208 1335208 G A CLPTM1L Missense_Mutation p.H254Y 0.95 tolerated(0.25) possibly_damaging(0.793) TCGA-GN-A8LK-06 5 133533493 133533493 A G PPP2CA Silent p.V300V 0.32 TCGA-GN-A8LK-06 5 133657507 133657507 T A CDKL3 Missense_Mutation p.L209F 0.33 tolerated(0.16) benign(0.443) TCGA-GN-A8LK-06 5 133716457 133716457 C T UBE2B Missense_Mutation p.P67S 0.19 deleterious(0.01) possibly_damaging(0.865) TCGA-GN-A8LK-06 5 134782763 134782763 C T C5orf20 Silent p.S12S 0.49 TCGA-GN-A8LK-06 5 135587369 135587369 G A TRPC7 Missense_Mutation p.S516L 0.31 deleterious(0.05) benign(0.006) TCGA-GN-A8LK-06 5 135692415 135692415 C T TRPC7 Missense_Mutation p.A221T 0.67 tolerated(0.38) possibly_damaging(0.86) TCGA-GN-A8LK-06 5 13823431 13823431 G A DNAH5 Missense_Mutation p.P2210S 0.97 possibly_damaging(0.641) TCGA-GN-A8LK-06 5 13841969 13841969 C T DNAH5 Silent p.T1772T 0.96 TCGA-GN-A8LK-06 5 13870977 13870977 G A DNAH5 Missense_Mutation p.R1245C 0.96 possibly_damaging(0.689) TCGA-GN-A8LK-06 5 13914686 13914686 C T DNAH5 Nonsense_Mutation p.W421* 0.88 TCGA-GN-A8LK-06 5 140175559 140175559 C T PCDHA2 Missense_Mutation p.S337L 1.00 tolerated_low_confidence(1) benign(0) TCGA-GN-A8LK-06 5 140180997 140180997 G A PCDHA3 Missense_Mutation p.G72E 0.89 tolerated_low_confidence(0.07) possibly_damaging(0.545) TCGA-GN-A8LK-06 5 140202371 140202371 G A PCDHA5 Silent p.V337V 0.96 TCGA-GN-A8LK-06 5 140222729 140222729 C T PCDHA8 Missense_Mutation p.S608L 0.96 tolerated_low_confidence(0.05) benign(0.411) TCGA-GN-A8LK-06 5 140237810 140237810 C T PCDHA10 Missense_Mutation p.T726I 0.97 deleterious_low_confidence(0.05) benign(0.015) TCGA-GN-A8LK-06 5 140262658 140262658 C T PCDHA13 Missense_Mutation p.P269S 0.96 tolerated_low_confidence(0.25) benign(0.028) TCGA-GN-A8LK-06 5 140348125 140348125 G A PCDHAC2 Missense_Mutation p.E592K 0.90 deleterious(0) possibly_damaging(0.581) TCGA-GN-A8LK-06 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.89 TCGA-GN-A8LK-06 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.92 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A8LK-06 5 140516672 140516672 C T PCDHB5 Silent p.D552D 0.96 TCGA-GN-A8LK-06 5 140553242 140553242 G A PCDHB7 Missense_Mutation p.E276K 0.98 tolerated_low_confidence(0.24) benign(0.007) TCGA-GN-A8LK-06 5 140554294 140554294 C T PCDHB7 Silent p.T626T 0.31 TCGA-GN-A8LK-06 5 140554521 140554521 C T PCDHB7 Missense_Mutation p.S702L 0.32 deleterious_low_confidence(0) benign(0.393) TCGA-GN-A8LK-06 5 140558506 140558506 C T PCDHB8 Silent p.F297F 0.28 TCGA-GN-A8LK-06 5 140572902 140572902 C T PCDHB10 Silent p.F259F 0.92 TCGA-GN-A8LK-06 5 140616323 140616323 C T PCDHB18 RNA 0.90 TCGA-GN-A8LK-06 5 140724570 140724570 G A PCDHGA3 Missense_Mutation p.G324R 0.95 deleterious_low_confidence(0.04) possibly_damaging(0.478) TCGA-GN-A8LK-06 5 140732232 140732232 C T PCDHGB1 Missense_Mutation p.S802L 1.00 tolerated(0.36) benign(0.001) TCGA-GN-A8LK-06 5 140751207 140751207 C T PCDHGB3 Missense_Mutation p.P416S 0.98 tolerated(0.62) benign(0.013) TCGA-GN-A8LK-06 5 140764376 140764376 C T PCDHGA7 Missense_Mutation p.A637V 0.90 deleterious_low_confidence(0.02) benign(0.279) TCGA-GN-A8LK-06 5 14508132 14508132 C T TRIO Silent p.L2965L 0.97 TCGA-GN-A8LK-06 5 145442282 145442282 C T SH3RF2 3'UTR 0.90 TCGA-GN-A8LK-06 5 146017913 146017913 G A PPP2R2B Missense_Mutation p.H234Y 0.96 deleterious(0) possibly_damaging(0.671) TCGA-GN-A8LK-06 5 147475428 147475428 G A SPINK5 Missense_Mutation p.G281E 0.97 tolerated(0.36) benign(0.001) TCGA-GN-A8LK-06 5 149225366 149225366 G A PPARGC1B Missense_Mutation p.A954T 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 5 149375347 149375347 G A TIGD6 Missense_Mutation p.P189S 0.46 deleterious(0.03) probably_damaging(0.989) TCGA-GN-A8LK-06 5 149581919 149581919 G A SLC6A7 Missense_Mutation p.E290K 0.42 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LK-06 5 149751685 149751685 C T TCOF1 Silent p.V252V 0.52 TCGA-GN-A8LK-06 5 150683029 150683029 C T SLC36A3 5'UTR 0.29 TCGA-GN-A8LK-06 5 150911458 150911458 C T FAT2 Silent p.G3167G 0.49 TCGA-GN-A8LK-06 5 151239475 151239475 G A GLRA1 Missense_Mutation p.S116F 0.39 deleterious(0) possibly_damaging(0.763) TCGA-GN-A8LK-06 5 151784024 151784024 G A NMUR2 Silent p.I217I 0.44 TCGA-GN-A8LK-06 5 153190731 153190731 G A GRIA1 Silent p.S899S 0.44 TCGA-GN-A8LK-06 5 154299526 154299526 C T GEMIN5 Splice_Site p.X533_splice 0.44 TCGA-GN-A8LK-06 5 154393499 154393499 G A KIF4B Missense_Mutation p.G27D 0.47 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 5 154394091 154394091 G A KIF4B Silent p.K224K 0.48 TCGA-GN-A8LK-06 5 154395774 154395774 G A KIF4B Silent p.K785K 0.42 TCGA-GN-A8LK-06 5 156741426 156741426 G A CYFIP2 Silent p.R369R 0.34 TCGA-GN-A8LK-06 5 156770033 156770033 C T FNDC9 Missense_Mutation p.R171K 0.43 tolerated(0.94) benign(0.053) TCGA-GN-A8LK-06 5 156915425 156915425 C T ADAM19 Missense_Mutation p.G800S 0.52 tolerated(0.62) benign(0.006) TCGA-GN-A8LK-06 5 158523386 158523386 C T EBF1 Missense_Mutation p.G107E 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 5 158526478 158526478 C T EBF1 Silent p.G3G 0.38 TCGA-GN-A8LK-06 5 159839506 159839506 G A SLU7 Silent p.A197A 0.34 TCGA-GN-A8LK-06 5 159839507 159839507 G A SLU7 Missense_Mutation p.A197V 0.35 deleterious(0.02) probably_damaging(0.957) TCGA-GN-A8LK-06 5 160033906 160033906 C T ATP10B Missense_Mutation p.G1009E 0.37 tolerated(1) possibly_damaging(0.633) TCGA-GN-A8LK-06 5 160047353 160047353 C T ATP10B Splice_Site p.X806_splice 0.43 TCGA-GN-A8LK-06 5 160758069 160758069 G A GABRB2 Missense_Mutation p.P300S 0.47 tolerated(0.82) probably_damaging(0.962) TCGA-GN-A8LK-06 5 161113012 161113012 C T GABRA6 Missense_Mutation p.P6L 0.47 tolerated_low_confidence(0.71) benign(0) TCGA-GN-A8LK-06 5 161113261 161113261 G A GABRA6 Missense_Mutation p.E22K 0.54 tolerated_low_confidence(1) benign(0) TCGA-GN-A8LK-06 5 161324264 161324264 G A GABRA1 Missense_Mutation p.E403K 0.52 tolerated(0.19) benign(0.002) TCGA-GN-A8LK-06 5 161576210 161576210 C T GABRG2 Missense_Mutation p.S380F 0.38 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 5 167379687 167379687 C T TENM2 Silent p.S269S 0.38 TCGA-GN-A8LK-06 5 167419955 167419955 C T TENM2 Silent p.F318F 0.23 TCGA-GN-A8LK-06 5 167517638 167517638 G A TENM2 Silent p.R525R 0.44 TCGA-GN-A8LK-06 5 168180962 168180962 C T SLIT3 Missense_Mutation p.G579E 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 5 169028409 169028409 A G SPDL1 Missense_Mutation p.K484E 0.55 tolerated(0.19) benign(0.004) TCGA-GN-A8LK-06 5 169127125 169127125 C T DOCK2 Missense_Mutation p.P414S 0.35 deleterious(0) possibly_damaging(0.615) TCGA-GN-A8LK-06 5 175540993 175540993 C T FAM153B Missense_Mutation p.P292S 0.53 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-GN-A8LK-06 5 176084635 176084635 C T TSPAN17 Missense_Mutation p.P312L 0.34 deleterious_low_confidence(0.01) benign(0.035) TCGA-GN-A8LK-06 5 176935404 176935404 C T DOK3 Missense_Mutation p.R125Q 0.44 deleterious(0) possibly_damaging(0.787) TCGA-GN-A8LK-06 5 178154083 178154083 T A ZNF354A Missense_Mutation p.D26V 0.32 deleterious(0) possibly_damaging(0.598) TCGA-GN-A8LK-06 5 178194274 178194274 C T AACSP1 RNA 0.57 TCGA-GN-A8LK-06 5 178585787 178585787 C T ADAMTS2 Missense_Mutation p.D357N 0.43 tolerated(0.09) benign(0.41) TCGA-GN-A8LK-06 5 179994989 179994989 C G CNOT6 Missense_Mutation p.S338W 0.47 tolerated(0.18) possibly_damaging(0.647) TCGA-GN-A8LK-06 5 179994991 179994991 A C CNOT6 Missense_Mutation p.I339L 0.47 tolerated(0.75) benign(0.002) TCGA-GN-A8LK-06 5 19839125 19839125 C T CDH18 5'UTR 0.89 TCGA-GN-A8LK-06 5 31323218 31323218 G A CDH6 Missense_Mutation p.D726N 1.00 deleterious(0.04) probably_damaging(0.996) TCGA-GN-A8LK-06 5 33576166 33576166 C T ADAMTS12 Nonsense_Mutation p.W1322* 0.98 TCGA-GN-A8LK-06 5 39285309 39285309 C T C9 Missense_Mutation p.E558K 0.89 deleterious_low_confidence(0) benign(0) TCGA-GN-A8LK-06 5 41159246 41159246 C T C6 Silent p.G598G 0.90 TCGA-GN-A8LK-06 5 41159266 41159266 G A C6 Missense_Mutation p.P592S 0.87 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 5 44305179 44305179 C T FGF10 Missense_Mutation p.G182E 0.93 tolerated(0.38) probably_damaging(0.909) TCGA-GN-A8LK-06 5 49723986 49723986 G A EMB Missense_Mutation p.S63L 0.97 tolerated(0.29) benign(0.007) TCGA-GN-A8LK-06 5 52183679 52183679 G A ITGA1 Missense_Mutation p.R269Q 0.87 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 5 5454682 5454682 C T KIAA0947 Silent p.L208L 1.00 TCGA-GN-A8LK-06 5 5489316 5489316 C T KIAA0947 Missense_Mutation p.P2225L 1.00 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LK-06 5 63256691 63256691 C T HTR1A Missense_Mutation p.D286N 0.89 tolerated(0.43) possibly_damaging(0.497) TCGA-GN-A8LK-06 5 64625273 64625273 C T ADAMTS6 Silent p.R385R 0.96 TCGA-GN-A8LK-06 5 74325445 74325445 G A GCNT4 Missense_Mutation p.H140Y 0.92 deleterious(0.03) probably_damaging(1) TCGA-GN-A8LK-06 5 78359590 78359590 G A DMGDH Missense_Mutation p.S41F 0.92 tolerated_low_confidence(0.73) benign(0.001) TCGA-GN-A8LK-06 5 889783 889783 A G BRD9 Intron 0.94 TCGA-GN-A8LK-06 5 89940664 89940664 C T GPR98 Missense_Mutation p.T959I 0.98 benign(0.004) TCGA-GN-A8LK-06 5 90001318 90001318 C T GPR98 Missense_Mutation p.L2830F 0.90 probably_damaging(0.992) TCGA-GN-A8LK-06 5 9629665 9629665 G A TAS2R1 Silent p.F160F 1.00 TCGA-GN-A8LK-06 6 100838908 100838908 C T SIM1 Missense_Mutation p.E544K 0.51 tolerated_low_confidence(0.16) benign(0.339) TCGA-GN-A8LK-06 6 102307279 102307279 G A GRIK2 Missense_Mutation p.E479K 0.45 tolerated(0.44) possibly_damaging(0.714) TCGA-GN-A8LK-06 6 105244872 105244872 G A HACE1 Silent p.L216L 0.32 TCGA-GN-A8LK-06 6 106968419 106968419 A G AIM1 Missense_Mutation p.I704M 0.51 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 6 106987360 106987360 G A AIM1 Missense_Mutation p.D1193N 0.45 tolerated(0.43) benign(0.065) TCGA-GN-A8LK-06 6 107361011 107361011 C T C6orf203 Missense_Mutation p.P21L 0.48 tolerated(1) possibly_damaging(0.867) TCGA-GN-A8LK-06 6 107955131 107955131 C T SOBP Silent p.I361I 0.51 TCGA-GN-A8LK-06 6 108197855 108197855 T A SEC63 Missense_Mutation p.E649D 0.44 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 6 10875048 10875048 G A GCM2 Missense_Mutation p.S234F 0.31 deleterious(0.01) possibly_damaging(0.629) TCGA-GN-A8LK-06 6 108984834 108984834 C T FOXO3 Silent p.R266R 0.33 TCGA-GN-A8LK-06 6 109773471 109773471 G A MICAL1 Silent p.F270F 0.49 TCGA-GN-A8LK-06 6 112469416 112469416 G A LAMA4 Missense_Mutation p.L766F 0.44 deleterious(0.04) benign(0.35) TCGA-GN-A8LK-06 6 116757672 116757672 C T DSE Nonsense_Mutation p.Q681* 0.48 TCGA-GN-A8LK-06 6 117237396 117237396 A T RFX6 Silent p.G297G 0.44 TCGA-GN-A8LK-06 6 117245850 117245850 G A RFX6 Missense_Mutation p.R525Q 0.44 tolerated(0.06) possibly_damaging(0.556) TCGA-GN-A8LK-06 6 119510834 119510834 C T MAN1A1 Missense_Mutation p.R514Q 0.47 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LK-06 6 12121631 12121631 C T HIVEP1 Missense_Mutation p.P535S 0.57 tolerated(0.15) benign(0.391) TCGA-GN-A8LK-06 6 123384965 123384965 G A CLVS2 3'UTR 0.57 TCGA-GN-A8LK-06 6 123588875 123588875 C T TRDN Missense_Mutation p.R587K 0.59 tolerated_low_confidence(1) benign(0.002) TCGA-GN-A8LK-06 6 125283900 125283900 G A RP11-510H23.1 Intron 0.48 TCGA-GN-A8LK-06 6 127608876 127608876 G A RNF146 3'UTR 0.47 TCGA-GN-A8LK-06 6 127608877 127608877 G A RNF146 3'UTR 0.49 TCGA-GN-A8LK-06 6 127767753 127767753 C T KIAA0408 Missense_Mutation p.E571K 0.53 deleterious(0.03) benign(0.084) TCGA-GN-A8LK-06 6 127768717 127768717 C T KIAA0408 Silent p.T249T 0.50 TCGA-GN-A8LK-06 6 128150642 128150642 C T THEMIS Missense_Mutation p.E230K 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-GN-A8LK-06 6 129618862 129618862 C T LAMA2 Silent p.G963G 0.50 TCGA-GN-A8LK-06 6 129785561 129785561 G A LAMA2 Silent p.S2373S 0.52 TCGA-GN-A8LK-06 6 130465700 130465700 C T SAMD3 Missense_Mutation p.E510K 0.43 tolerated_low_confidence(0.22) benign(0.002) TCGA-GN-A8LK-06 6 130505695 130505695 G A SAMD3 Missense_Mutation p.P153S 0.43 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 6 130762616 130762616 C T TMEM200A Missense_Mutation p.S350F 0.47 deleterious(0.02) possibly_damaging(0.451) TCGA-GN-A8LK-06 6 132938292 132938292 C T TAAR2 Silent p.E351E 0.42 TCGA-GN-A8LK-06 6 133135713 133135713 T A RPS12 5'UTR 0.33 TCGA-GN-A8LK-06 6 133777780 133777780 G A EYA4 Missense_Mutation p.G122R 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 6 133783758 133783758 G A EYA4 Splice_Site p.X194_splice 0.59 TCGA-GN-A8LK-06 6 134492050 134492050 C T SGK1 Missense_Mutation p.E443K 0.32 deleterious(0.03) benign(0.286) TCGA-GN-A8LK-06 6 13588615 13588615 C T SIRT5 Silent p.I56I 0.30 TCGA-GN-A8LK-06 6 136512869 136512869 G A PDE7B Missense_Mutation p.S415N 0.75 tolerated(0.2) benign(0.002) TCGA-GN-A8LK-06 6 138417559 138417559 A G PERP Missense_Mutation p.F96S 0.43 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A8LK-06 6 139498218 139498218 C T HECA Silent p.S536S 0.41 TCGA-GN-A8LK-06 6 142409379 142409379 G A NMBR Silent p.A139A 0.38 TCGA-GN-A8LK-06 6 142409478 142409478 G A NMBR Silent p.F106F 0.45 TCGA-GN-A8LK-06 6 142409709 142409709 G A NMBR Silent p.F29F 0.24 TCGA-GN-A8LK-06 6 147684753 147684753 C T STXBP5 Missense_Mutation p.S943L 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-GN-A8LK-06 6 149983275 149983275 G A LATS1 Missense_Mutation p.R995C 0.39 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 6 150005685 150005685 A G LATS1 Silent p.G180G 0.40 TCGA-GN-A8LK-06 6 150023152 150023152 G A LATS1 Silent p.S37S 0.42 TCGA-GN-A8LK-06 6 150266454 150266454 C T ULBP2 Missense_Mutation p.S32F 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-GN-A8LK-06 6 151751292 151751292 C T RMND1 Nonsense_Mutation p.W237* 0.45 TCGA-GN-A8LK-06 6 151869538 151869538 G A CCDC170 Missense_Mutation p.E230K 0.51 deleterious(0) probably_damaging(0.933) TCGA-GN-A8LK-06 6 152551753 152551753 C T SYNE1 Missense_Mutation p.E7042K 0.45 benign(0.292) TCGA-GN-A8LK-06 6 152861132 152861132 C T SYNE1 Missense_Mutation p.R31Q 0.50 probably_damaging(0.945) TCGA-GN-A8LK-06 6 155743894 155743894 G A NOX3 Silent p.F414F 0.39 TCGA-GN-A8LK-06 6 155750037 155750037 C T NOX3 Missense_Mutation p.E346K 0.55 deleterious(0) possibly_damaging(0.741) TCGA-GN-A8LK-06 6 159166600 159166600 A G SYTL3 Missense_Mutation p.H315R 0.52 tolerated(1) benign(0) TCGA-GN-A8LK-06 6 159621614 159621614 G A FNDC1 Splice_Site p.X154_splice 0.30 TCGA-GN-A8LK-06 6 159653718 159653718 G A FNDC1 Missense_Mutation p.G725E 0.45 deleterious_low_confidence(0.04) unknown(0) TCGA-GN-A8LK-06 6 159654327 159654327 A G FNDC1 Missense_Mutation p.N928S 0.61 tolerated_low_confidence(0.07) unknown(0) TCGA-GN-A8LK-06 6 160461647 160461647 C T IGF2R Silent p.F457F 0.42 TCGA-GN-A8LK-06 6 160858107 160858107 C T SLC22A3 Silent p.F384F 0.41 TCGA-GN-A8LK-06 6 160999724 160999724 C T LPA Silent p.R1434R 0.60 TCGA-GN-A8LK-06 6 161132176 161132176 T C PLG Silent p.N120N 0.37 TCGA-GN-A8LK-06 6 161134071 161134071 A G PLG Missense_Mutation p.N154S 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 6 161969910 161969910 T C PARK2 Silent p.E353E 0.47 TCGA-GN-A8LK-06 6 16326691 16326691 C T ATXN1 Silent p.R617R 0.27 TCGA-GN-A8LK-06 6 16328252 16328252 G A ATXN1 Missense_Mutation p.P97L 0.35 deleterious(0.01) possibly_damaging(0.848) TCGA-GN-A8LK-06 6 163483209 163483209 C T PACRG Missense_Mutation p.H107Y 0.42 tolerated(0.22) benign(0.405) TCGA-GN-A8LK-06 6 165706907 165706907 C T C6orf118 Missense_Mutation p.R372Q 0.49 tolerated(0.15) benign(0.01) TCGA-GN-A8LK-06 6 168351879 168351879 C T MLLT4 Missense_Mutation p.S1275F 0.40 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-GN-A8LK-06 6 17764294 17764294 G A KIF13A 3'UTR 0.32 TCGA-GN-A8LK-06 6 18465155 18465155 C T RNF144B Intron 0.24 TCGA-GN-A8LK-06 6 24178596 24178596 C T DCDC2 Missense_Mutation p.E430K 0.32 deleterious_low_confidence(0.04) benign(0.014) TCGA-GN-A8LK-06 6 25529026 25529026 G A LRRC16A Missense_Mutation p.E658K 0.27 deleterious(0.01) probably_damaging(0.936) TCGA-GN-A8LK-06 6 25600897 25600897 G A LRRC16A Missense_Mutation p.G1159R 0.31 deleterious_low_confidence(0) benign(0.063) TCGA-GN-A8LK-06 6 25600898 25600898 G A LRRC16A Missense_Mutation p.G1159E 0.32 deleterious_low_confidence(0) possibly_damaging(0.659) TCGA-GN-A8LK-06 6 25762170 25762170 C T SLC17A4 5'UTR 0.31 TCGA-GN-A8LK-06 6 25811982 25811982 G A SLC17A1 Missense_Mutation p.S305F 0.22 deleterious(0) possibly_damaging(0.878) TCGA-GN-A8LK-06 6 25917233 25917233 C T SLC17A2 Silent p.R244R 0.37 TCGA-GN-A8LK-06 6 26046003 26046003 C T HIST1H3C Missense_Mutation p.P122L 0.20 deleterious_low_confidence(0) benign(0.007) TCGA-GN-A8LK-06 6 26046004 26046004 C T HIST1H3C Silent p.P122P 0.20 TCGA-GN-A8LK-06 6 26056391 26056391 C T HIST1H1C Missense_Mutation p.S89N 0.27 tolerated(0.27) benign(0.147) TCGA-GN-A8LK-06 6 26406217 26406217 C T BTN3A1 Missense_Mutation p.P56S 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A8LK-06 6 27222548 27222548 G A PRSS16 Silent p.Q409Q 0.36 TCGA-GN-A8LK-06 6 27369105 27369105 C T ZNF391 Missense_Mutation p.S319F 0.29 tolerated(0.05) probably_damaging(0.917) TCGA-GN-A8LK-06 6 27834801 27834801 C G HIST1H1B Missense_Mutation p.K169N 0.64 deleterious(0) unknown(0) TCGA-GN-A8LK-06 6 27834843 27834843 A G HIST1H1B Silent p.T155T 0.61 TCGA-GN-A8LK-06 6 27858460 27858460 C T HIST1H3J Silent p.K37K 0.37 TCGA-GN-A8LK-06 6 27879155 27879155 T C OR2B2 Missense_Mutation p.R315G 0.28 tolerated(0.06) benign(0) TCGA-GN-A8LK-06 6 27925552 27925552 C T OR2B6 Silent p.L178L 0.34 TCGA-GN-A8LK-06 6 28294330 28294330 C T ZSCAN31 Silent p.R278R 0.27 TCGA-GN-A8LK-06 6 28297191 28297191 G A ZSCAN31 Silent p.I90I 0.64 TCGA-GN-A8LK-06 6 28963201 28963201 A G ZNF311 Silent p.P526P 0.32 TCGA-GN-A8LK-06 6 29231782 29231782 G T XXbac-BPG308J9.3 RNA 0.68 TCGA-GN-A8LK-06 6 29394631 29394631 G A OR11A1 Missense_Mutation p.P263L 0.35 deleterious(0.01) probably_damaging(0.942) TCGA-GN-A8LK-06 6 29761685 29761685 G A HLA-V Intron 0.22 TCGA-GN-A8LK-06 6 30078290 30078290 C T TRIM31 Missense_Mutation p.D227N 0.28 tolerated(0.3) benign(0) TCGA-GN-A8LK-06 6 30114892 30114892 G A TRIM40 Missense_Mutation p.R162K 0.21 tolerated(0.22) benign(0.011) TCGA-GN-A8LK-06 6 30229010 30229010 C T HCG17 Intron 0.30 TCGA-GN-A8LK-06 6 30630762 30630762 G A DHX16 Nonsense_Mutation p.Q452* 0.36 TCGA-GN-A8LK-06 6 30681114 30681114 G A MDC1 Missense_Mutation p.S202F 0.34 deleterious(0) probably_damaging(0.979) TCGA-GN-A8LK-06 6 30899873 30899873 T A SFTA2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) unknown(0) TCGA-GN-A8LK-06 6 31170458 31170479 CCAGACCCTGCCGGCATCTGCC - HCG27 Frame_Shift_Del p.P147Tfs*22 0.29 TCGA-GN-A8LK-06 6 31508134 31508134 G A DDX39B Missense_Mutation p.A59V 0.25 deleterious(0.02) benign(0.112) TCGA-GN-A8LK-06 6 31584230 31584230 C T AIF1 Silent p.S102S 0.38 TCGA-GN-A8LK-06 6 31609133 31609133 A G BAG6 Missense_Mutation p.F846L 0.29 tolerated(0.64) probably_damaging(0.914) TCGA-GN-A8LK-06 6 31632120 31632120 C T GPANK1 Missense_Mutation p.A46T 0.25 deleterious(0.03) benign(0.354) TCGA-GN-A8LK-06 6 31654931 31654931 G A ABHD16A 3'UTR 0.28 TCGA-GN-A8LK-06 6 31675536 31675536 G A LY6G6F Nonsense_Mutation p.W118* 0.33 TCGA-GN-A8LK-06 6 31725933 31725933 C T MSH5 Intron 0.21 TCGA-GN-A8LK-06 6 32013832 32013832 G A TNXB 5'UTR 0.44 TCGA-GN-A8LK-06 6 32088802 32088802 G A ATF6B Nonsense_Mutation p.Q222* 0.23 TCGA-GN-A8LK-06 6 32097260 32097260 G A FKBPL Missense_Mutation p.P100S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 6 32130637 32130637 A G PPT2 Missense_Mutation p.I279M 0.34 deleterious(0.01) possibly_damaging(0.889) TCGA-GN-A8LK-06 6 32163300 32163300 G A NOTCH4 Missense_Mutation p.P1976S 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.846) TCGA-GN-A8LK-06 6 32629838 32629838 G A HLA-DQB1 Silent p.I189I 0.94 TCGA-GN-A8LK-06 6 33139504 33139504 C T COL11A2 Missense_Mutation p.E960K 0.31 possibly_damaging(0.486) TCGA-GN-A8LK-06 6 33693327 33693327 C T IP6K3 Missense_Mutation p.G219E 0.32 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 6 34498354 34498354 G A PACSIN1 Missense_Mutation p.D343N 0.21 tolerated(0.17) benign(0.177) TCGA-GN-A8LK-06 6 35289161 35289161 A G DEF6 Missense_Mutation p.K624E 0.26 tolerated_low_confidence(0.12) unknown(0) TCGA-GN-A8LK-06 6 35477034 35477034 C T TULP1 Silent p.V258V 0.27 TCGA-GN-A8LK-06 6 35715134 35715134 G A ARMC12 Missense_Mutation p.D208N 0.33 tolerated(0.15) probably_damaging(0.918) TCGA-GN-A8LK-06 6 35755721 35755721 T C CLPSL1 Silent p.L100L 0.19 TCGA-GN-A8LK-06 6 36106794 36106794 C T MAPK13 Missense_Mutation p.S327F 0.22 deleterious(0.01) benign(0.002) TCGA-GN-A8LK-06 6 36181711 36181711 C T BRPF3 Missense_Mutation p.S846F 0.39 tolerated(0.08) possibly_damaging(0.736) TCGA-GN-A8LK-06 6 36294827 36294827 C T C6orf222 Missense_Mutation p.G258R 0.31 deleterious(0) probably_damaging(0.991) TCGA-GN-A8LK-06 6 36568959 36568959 C T SRSF3 Silent p.S124S 0.34 TCGA-GN-A8LK-06 6 36712900 36712900 G A CPNE5 Silent p.S452S 0.23 TCGA-GN-A8LK-06 6 36929271 36929271 C T PI16 Silent p.F146F 0.27 TCGA-GN-A8LK-06 6 36930928 36930928 G A PI16 Silent p.T270T 0.28 TCGA-GN-A8LK-06 6 36982752 36982752 G A FGD2 Missense_Mutation p.E323K 0.33 deleterious(0) probably_damaging(0.988) TCGA-GN-A8LK-06 6 38084504 38084504 C T ZFAND3 Missense_Mutation p.S173L 0.27 tolerated(0.07) possibly_damaging(0.495) TCGA-GN-A8LK-06 6 38794075 38794075 C T DNAH8 Missense_Mutation p.R1114C 0.29 benign(0.006) TCGA-GN-A8LK-06 6 38810229 38810229 G A DNAH8 Missense_Mutation p.G1301R 0.28 benign(0.008) TCGA-GN-A8LK-06 6 38830153 38830153 G A DNAH8 Missense_Mutation p.G1860R 0.26 probably_damaging(1) TCGA-GN-A8LK-06 6 38899718 38899718 G A DNAH8 Missense_Mutation p.M3585I 0.31 benign(0.032) TCGA-GN-A8LK-06 6 39159011 39159011 G A KCNK5 Silent p.S385S 0.23 TCGA-GN-A8LK-06 6 40360399 40360399 G A LRFN2 Silent p.V551V 0.26 TCGA-GN-A8LK-06 6 41196516 41196516 C T TREML4 Missense_Mutation p.S43L 0.27 tolerated(0.06) benign(0.173) TCGA-GN-A8LK-06 6 41309660 41309660 C T NCR2 Missense_Mutation p.P175S 0.32 tolerated(0.23) benign(0.175) TCGA-GN-A8LK-06 6 43231036 43231036 C T TTBK1 Missense_Mutation p.S645L 0.67 possibly_damaging(0.736) TCGA-GN-A8LK-06 6 43402535 43402535 C T ABCC10 Silent p.I519I 0.33 TCGA-GN-A8LK-06 6 43489005 43489005 C T POLR1C Silent p.F336F 0.55 TCGA-GN-A8LK-06 6 46797257 46797257 G A MEP1A Missense_Mutation p.D365N 0.61 tolerated(0.1) probably_damaging(1) TCGA-GN-A8LK-06 6 47846150 47846150 G A PTCHD4 Silent p.F810F 0.40 TCGA-GN-A8LK-06 6 49582514 49582514 T C RHAG Silent p.E231E 0.42 TCGA-GN-A8LK-06 6 49660530 49660530 C T CRISP2 Missense_Mutation p.E230K 0.46 tolerated(0.4) benign(0.05) TCGA-GN-A8LK-06 6 49754235 49754235 T C PGK2 Silent p.Q222Q 0.50 TCGA-GN-A8LK-06 6 51948043 51948043 C T PKHD1 Silent p.L21L 0.37 TCGA-GN-A8LK-06 6 52052459 52052459 G A IL17A Missense_Mutation p.R29Q 0.42 tolerated(1) benign(0.001) TCGA-GN-A8LK-06 6 54216168 54216168 G A TINAG Missense_Mutation p.E367K 0.38 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 6 55214900 55214900 A G GFRAL Silent p.K109K 0.50 TCGA-GN-A8LK-06 6 55360291 55360291 G A HMGCLL1 Missense_Mutation p.P271S 0.43 deleterious(0.03) probably_damaging(1) TCGA-GN-A8LK-06 6 55924020 55924020 C T COL21A1 Missense_Mutation p.E877K 0.36 tolerated(0.87) benign(0.012) TCGA-GN-A8LK-06 6 56035923 56035923 G A COL21A1 Missense_Mutation p.S215F 0.36 deleterious(0) probably_damaging(0.984) TCGA-GN-A8LK-06 6 69349019 69349019 C T BAI3 Missense_Mutation p.S151F 0.49 tolerated(0.17) probably_damaging(0.974) TCGA-GN-A8LK-06 6 73935080 73935080 C T KHDC1L Missense_Mutation p.E18K 0.37 deleterious(0.01) benign(0.086) TCGA-GN-A8LK-06 6 74072881 74072881 G A KHDC3L Missense_Mutation p.R78Q 0.47 tolerated(1) benign(0.005) TCGA-GN-A8LK-06 6 7584254 7584254 C T DSP Silent p.F2253F 0.26 TCGA-GN-A8LK-06 6 75853000 75853000 G A COL12A1 Nonsense_Mutation p.R1599* 0.41 TCGA-GN-A8LK-06 6 76540166 76540166 C T MYO6 Missense_Mutation p.P99S 0.41 deleterious(0) unknown(0) TCGA-GN-A8LK-06 6 76715223 76715223 C T IMPG1 Missense_Mutation p.A306T 0.40 tolerated(0.06) possibly_damaging(0.532) TCGA-GN-A8LK-06 6 76728533 76728533 C T IMPG1 Missense_Mutation p.E237K 0.50 deleterious(0.01) possibly_damaging(0.745) TCGA-GN-A8LK-06 6 76751735 76751735 C T IMPG1 Missense_Mutation p.R59Q 0.44 tolerated(0.14) benign(0.022) TCGA-GN-A8LK-06 6 83602717 83602717 G A UBE3D 3'UTR 0.37 TCGA-GN-A8LK-06 6 83775453 83775453 C T UBE3D 5'UTR 0.46 TCGA-GN-A8LK-06 6 83900647 83900647 G A PGM3 Nonsense_Mutation p.R57* 0.41 TCGA-GN-A8LK-06 6 87725520 87725520 C T HTR1E Silent p.P156P 0.41 TCGA-GN-A8LK-06 6 87725633 87725633 C T HTR1E Missense_Mutation p.P194L 0.61 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 6 87796031 87796031 C T CGA Silent p.T70T 0.50 TCGA-GN-A8LK-06 6 90009548 90009548 G A GABRR2 Silent p.I50I 0.42 TCGA-GN-A8LK-06 6 90605568 90605568 C T GJA10 Missense_Mutation p.P461S 0.45 tolerated(0.97) benign(0.007) TCGA-GN-A8LK-06 6 93953132 93953132 G A EPHA7 3'UTR 0.53 TCGA-GN-A8LK-06 6 93973581 93973581 G A EPHA7 Missense_Mutation p.H599Y 0.46 tolerated(0.27) benign(0.001) TCGA-GN-A8LK-06 6 97246780 97246780 G A GPR63 Silent p.I276I 0.47 TCGA-GN-A8LK-06 6 97599708 97599708 C T MMS22L Missense_Mutation p.V1141I 0.46 tolerated(0.12) benign(0.117) TCGA-GN-A8LK-06 6 97729140 97729140 G A MMS22L Missense_Mutation p.S88L 0.42 deleterious(0) probably_damaging(0.99) TCGA-GN-A8LK-06 7 100013713 100013713 C T ZCWPW1 Silent p.E212E 0.44 TCGA-GN-A8LK-06 7 100061138 100061138 G A C7orf61 Missense_Mutation p.P79S 0.44 tolerated(0.15) benign(0.027) TCGA-GN-A8LK-06 7 100086436 100086436 G A NYAP1 Silent p.K364K 0.52 TCGA-GN-A8LK-06 7 100086437 100086437 G A NYAP1 Missense_Mutation p.E365K 0.52 tolerated(0.12) probably_damaging(0.991) TCGA-GN-A8LK-06 7 100153245 100153245 C T AGFG2 Missense_Mutation p.S255F 0.48 tolerated(0.1) possibly_damaging(0.62) TCGA-GN-A8LK-06 7 100228604 100228604 G A TFR2 Missense_Mutation p.P393L 0.40 deleterious(0.02) probably_damaging(0.985) TCGA-GN-A8LK-06 7 100391880 100391880 G A ZAN Intron 0.47 TCGA-GN-A8LK-06 7 100479839 100479839 C T SRRT Silent p.F188F 0.45 TCGA-GN-A8LK-06 7 100675868 100675868 G A MUC17 Missense_Mutation p.G391R 0.51 benign(0.255) TCGA-GN-A8LK-06 7 100678116 100678116 C T MUC17 Missense_Mutation p.S1140L 0.48 unknown(0) TCGA-GN-A8LK-06 7 100681119 100681119 C T MUC17 Missense_Mutation p.S2141L 0.53 unknown(0) TCGA-GN-A8LK-06 7 100684116 100684116 C T MUC17 Missense_Mutation p.T3140I 0.45 probably_damaging(0.986) TCGA-GN-A8LK-06 7 100850958 100850958 G A PLOD3 Silent p.I612I 0.45 TCGA-GN-A8LK-06 7 102856988 102856988 T C DPY19L2P2 Intron 0.53 TCGA-GN-A8LK-06 7 103131204 103131204 G A RELN Silent p.F3172F 0.50 TCGA-GN-A8LK-06 7 107114988 107114988 G A GPR22 Missense_Mutation p.M161I 0.43 tolerated(0.24) benign(0.016) TCGA-GN-A8LK-06 7 107431556 107431556 C T SLC26A3 Silent p.L169L 0.49 TCGA-GN-A8LK-06 7 107605017 107605017 C T LAMB1 Missense_Mutation p.E560K 0.44 deleterious(0) benign(0.435) TCGA-GN-A8LK-06 7 107643409 107643409 C T LAMB1 5'UTR 0.43 TCGA-GN-A8LK-06 7 107818500 107818500 A T NRCAM Nonsense_Mutation p.L970* 0.41 TCGA-GN-A8LK-06 7 108204838 108204838 T C THAP5 Missense_Mutation p.I329V 0.38 tolerated(0.21) benign(0.003) TCGA-GN-A8LK-06 7 111382124 111382124 A G DOCK4 Missense_Mutation p.L1572P 0.48 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 7 113520099 113520099 G A PPP1R3A Missense_Mutation p.P350S 0.47 tolerated(0.14) benign(0.027) TCGA-GN-A8LK-06 7 11464393 11464393 T C THSD7A Missense_Mutation p.S1105G 0.45 deleterious(0) benign(0.002) TCGA-GN-A8LK-06 7 117417639 117417639 G A CTTNBP2 Missense_Mutation p.P902S 0.46 tolerated(0.84) benign(0.005) TCGA-GN-A8LK-06 7 1191933 1191933 A G ZFAND2A 3'Flank 0.69 TCGA-GN-A8LK-06 7 120781015 120781015 G A CPED1 Missense_Mutation p.E612K 0.47 deleterious(0.04) probably_damaging(0.998) TCGA-GN-A8LK-06 7 121960197 121960197 C T CADPS2 3'UTR 0.50 TCGA-GN-A8LK-06 7 123593981 123593981 C T SPAM1 Silent p.S119S 0.50 TCGA-GN-A8LK-06 7 123594535 123594535 C - SPAM1 Frame_Shift_Del p.R305Afs*2 0.25 TCGA-GN-A8LK-06 7 127222798 127222798 G A GCC1 Missense_Mutation p.S533F 0.50 tolerated(0.12) possibly_damaging(0.668) TCGA-GN-A8LK-06 7 127255714 127255714 C T PAX4 5'UTR 0.54 TCGA-GN-A8LK-06 7 127637778 127637778 C T SND1 Intron 0.50 TCGA-GN-A8LK-06 7 128483600 128483600 C T FLNC Missense_Mutation p.S927F 0.47 deleterious(0) probably_damaging(0.953) TCGA-GN-A8LK-06 7 128490963 128490963 G A FLNC Silent p.Q1835Q 0.43 TCGA-GN-A8LK-06 7 130027928 130027928 G A CPA1 3'UTR 0.48 TCGA-GN-A8LK-06 7 130039918 130039918 T G CEP41 Missense_Mutation p.Y312S 0.48 tolerated(0.34) benign(0.028) TCGA-GN-A8LK-06 7 130351748 130351748 G A COPG2 Missense_Mutation p.P38S 0.62 deleterious(0.03) probably_damaging(0.964) TCGA-GN-A8LK-06 7 131859633 131859633 C T PLXNA4 Silent p.L1307L 0.54 TCGA-GN-A8LK-06 7 134217816 134217816 T C AKR1B10 Missense_Mutation p.F138L 0.46 tolerated(0.19) possibly_damaging(0.847) TCGA-GN-A8LK-06 7 134363715 134363715 C A BPGM Missense_Mutation p.Q238K 0.43 tolerated(0.25) benign(0.005) TCGA-GN-A8LK-06 7 134896311 134896311 G A WDR91 5'Flank 0.47 TCGA-GN-A8LK-06 7 134925449 134925449 C T STRA8 Missense_Mutation p.S80F 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-GN-A8LK-06 7 136700335 136700335 G A CHRM2 Silent p.V241V 0.44 TCGA-GN-A8LK-06 7 136700751 136700751 C T CHRM2 Missense_Mutation p.S380F 0.48 tolerated(0.38) possibly_damaging(0.806) TCGA-GN-A8LK-06 7 136700919 136700919 A G CHRM2 Missense_Mutation p.N436S 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 7 136701023 136701023 G A CHRM2 3'UTR 0.49 TCGA-GN-A8LK-06 7 137597804 137597804 G A CREB3L2 Silent p.T172T 0.45 TCGA-GN-A8LK-06 7 137773477 137773477 G A AKR1D1 Missense_Mutation p.G75E 0.35 deleterious(0.01) possibly_damaging(0.618) TCGA-GN-A8LK-06 7 138391448 138391448 T C ATP6V0A4 Missense_Mutation p.N815S 0.52 tolerated(0.75) probably_damaging(0.999) TCGA-GN-A8LK-06 7 138764796 138764796 G A ZC3HAV1 Silent p.F297F 0.49 TCGA-GN-A8LK-06 7 138764933 138764933 G A ZC3HAV1 Missense_Mutation p.R252W 0.42 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LK-06 7 139026219 139026219 G A LUC7L2 Missense_Mutation p.R30H 0.46 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-GN-A8LK-06 7 139060890 139060890 C T C7orf55-LUC7L2 Silent p.V48V 0.37 TCGA-GN-A8LK-06 7 139164391 139164391 G A KLRG2 Silent p.P329P 0.45 TCGA-GN-A8LK-06 7 141645193 141645193 C T CLEC5A Silent p.Q29Q 0.40 TCGA-GN-A8LK-06 7 141722186 141722186 G A MGAM Missense_Mutation p.D277N 0.54 tolerated(0.22) benign(0.037) TCGA-GN-A8LK-06 7 141730224 141730224 G A MGAM Silent p.V428V 0.46 TCGA-GN-A8LK-06 7 141734623 141734623 C T MGAM Silent p.N647N 0.49 TCGA-GN-A8LK-06 7 141760158 141760158 G A MGAM Nonsense_Mutation p.W1369* 0.49 TCGA-GN-A8LK-06 7 141805641 141805641 A T MGAM Missense_Mutation p.N1842Y 0.47 deleterious(0.01) benign(0.007) TCGA-GN-A8LK-06 7 141951999 141951999 G A PRSS58 3'UTR 0.48 TCGA-GN-A8LK-06 7 142001017 142001017 G A TRBV2 Missense_Mutation p.E4K 0.35 TCGA-GN-A8LK-06 7 142120283 142120283 G A TRBV7-7 Silent p.F13F 0.42 TCGA-GN-A8LK-06 7 142478857 142478857 C T PRSS3P2 RNA 0.73 TCGA-GN-A8LK-06 7 142563911 142563911 C T EPHB6 Silent p.F433F 0.59 TCGA-GN-A8LK-06 7 142638393 142638393 G A KEL Silent p.F715F 0.47 TCGA-GN-A8LK-06 7 142649627 142649627 T G KEL Missense_Mutation p.K391T 0.42 tolerated(0.33) possibly_damaging(0.457) TCGA-GN-A8LK-06 7 142832342 142832342 G A PIP Missense_Mutation p.E51K 0.45 deleterious(0) possibly_damaging(0.703) TCGA-GN-A8LK-06 7 143748032 143748032 G A OR2A5 Missense_Mutation p.E180K 0.42 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LK-06 7 143792204 143792204 G A OR2A12 Missense_Mutation p.E2K 0.51 tolerated(0.38) benign(0.001) TCGA-GN-A8LK-06 7 143807472 143807472 G A OR2A2 Missense_Mutation p.R266Q 0.51 tolerated(0.22) benign(0.044) TCGA-GN-A8LK-06 7 143826451 143826451 G A OR2A14 Silent p.T82T 0.46 TCGA-GN-A8LK-06 7 143882607 143882607 G A CTAGE4 Missense_Mutation p.D671N 0.23 tolerated(0.31) benign(0.012) TCGA-GN-A8LK-06 7 143885422 143885422 C T ARHGEF35 Missense_Mutation p.E19K 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-GN-A8LK-06 7 143955984 143955984 C T OR2A7 Silent p.V246V 0.12 TCGA-GN-A8LK-06 7 144060857 144060857 G A ARHGEF5 Silent p.K365K 0.69 TCGA-GN-A8LK-06 7 144068383 144068383 C T ARHGEF5 Missense_Mutation p.R1221C 0.17 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 7 1479608 1479608 C T MICALL2 Missense_Mutation p.R640K 0.50 tolerated(0.89) benign(0.079) TCGA-GN-A8LK-06 7 148112601 148112601 G A CNTNAP2 Missense_Mutation p.E1297K 0.45 deleterious(0) probably_damaging(0.941) TCGA-GN-A8LK-06 7 148921391 148921391 C T ZNF282 Silent p.N556N 0.49 TCGA-GN-A8LK-06 7 148979047 148979047 C A ZNF783 Silent p.S418S 0.56 TCGA-GN-A8LK-06 7 149493564 149493564 G A SSPO RNA 0.45 TCGA-GN-A8LK-06 7 149544895 149544895 C T ZNF862 Missense_Mutation p.P105S 0.34 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GN-A8LK-06 7 150034234 150034234 C T LRRC61 Missense_Mutation p.T95I 0.52 tolerated(0.05) benign(0.035) TCGA-GN-A8LK-06 7 150034235 150034235 C T LRRC61 Silent p.T95T 0.51 TCGA-GN-A8LK-06 7 150163910 150163910 G A GIMAP8 Missense_Mutation p.D42N 0.43 tolerated(0.26) benign(0.15) TCGA-GN-A8LK-06 7 150174894 150174894 C T GIMAP8 3'UTR 0.62 TCGA-GN-A8LK-06 7 150217305 150217305 C T GIMAP7 Silent p.I81I 0.58 TCGA-GN-A8LK-06 7 150269755 150269755 G A GIMAP4 Silent p.E199E 0.52 TCGA-GN-A8LK-06 7 150269785 150269785 C T GIMAP4 Silent p.I209I 0.45 TCGA-GN-A8LK-06 7 150501985 150501985 G A TMEM176A 3'UTR 0.46 TCGA-GN-A8LK-06 7 150747313 150747313 G A ASIC3 Missense_Mutation p.E219K 0.54 deleterious(0) benign(0.318) TCGA-GN-A8LK-06 7 150931333 150931333 C T CHPF2 Missense_Mutation p.P79L 0.36 tolerated(0.12) probably_damaging(0.957) TCGA-GN-A8LK-06 7 150932585 150932585 C A CHPF2 Missense_Mutation p.L239M 0.51 deleterious(0) possibly_damaging(0.78) TCGA-GN-A8LK-06 7 150932586 150932586 T C CHPF2 Missense_Mutation p.L239P 0.50 deleterious(0) probably_damaging(0.99) TCGA-GN-A8LK-06 7 1516210 1516210 G A INTS1 Missense_Mutation p.P1716L 0.42 deleterious(0) possibly_damaging(0.852) TCGA-GN-A8LK-06 7 151716939 151716939 C T GALNTL5 3'UTR 0.43 TCGA-GN-A8LK-06 7 1542743 1542743 G T INTS1 Missense_Mutation p.P48Q 0.50 deleterious(0) possibly_damaging(0.514) TCGA-GN-A8LK-06 7 154862946 154862946 C T HTR5A-AS1 Missense_Mutation p.S23N 0.47 deleterious_low_confidence(0) benign(0.383) TCGA-GN-A8LK-06 7 156754903 156754903 C T NOM1 Missense_Mutation p.P564L 0.44 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 7 16317842 16317842 G A ISPD Missense_Mutation p.S282F 0.41 deleterious(0.01) benign(0.133) TCGA-GN-A8LK-06 7 19765299 19765299 G A TMEM196 Silent p.S99S 0.53 TCGA-GN-A8LK-06 7 20793091 20793091 G A ABCB5 Missense_Mutation p.D1180N 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 7 21778373 21778373 G A DNAH11 Missense_Mutation p.G2574E 0.53 probably_damaging(0.927) TCGA-GN-A8LK-06 7 21941881 21941881 G A CDCA7L 3'UTR 0.46 TCGA-GN-A8LK-06 7 23826539 23826539 C T STK31 Missense_Mutation p.S828L 0.55 tolerated(0.21) benign(0.042) TCGA-GN-A8LK-06 7 23871787 23871787 G T STK31 Missense_Mutation p.L954F 0.36 deleterious(0.03) possibly_damaging(0.861) TCGA-GN-A8LK-06 7 2409303 2409303 C T EIF3B Missense_Mutation p.P534S 0.41 tolerated(0.65) benign(0.052) TCGA-GN-A8LK-06 7 2472691 2472691 C T CHST12 Silent p.F139F 0.44 TCGA-GN-A8LK-06 7 27239145 27239145 C T HOXA13 Missense_Mutation p.M184I 0.48 deleterious(0.04) benign(0.005) TCGA-GN-A8LK-06 7 2974155 2974155 G A CARD11 Missense_Mutation p.P484S 0.35 tolerated(0.07) possibly_damaging(0.616) TCGA-GN-A8LK-06 7 30693148 30693148 G A CRHR2 Silent p.A415A 0.44 TCGA-GN-A8LK-06 7 30795286 30795301 ACATGGTGGGGAAGCG - INMT Frame_Shift_Del p.Y204Lfs*68 0.38 TCGA-GN-A8LK-06 7 32209475 32209475 G A PDE1C Missense_Mutation p.P77L 0.45 tolerated_low_confidence(0.15) benign(0.17) TCGA-GN-A8LK-06 7 34867072 34867072 C T NPSR1 Missense_Mutation p.P180S 0.39 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 7 36656066 36656066 C T AOAH Missense_Mutation p.G256R 0.68 deleterious(0) probably_damaging(0.962) TCGA-GN-A8LK-06 7 37956153 37956153 C T SFRP4 5'UTR 0.40 TCGA-GN-A8LK-06 7 38259228 38259228 G A STARD3NL Missense_Mutation p.G206S 0.41 deleterious(0) probably_damaging(0.951) TCGA-GN-A8LK-06 7 38908850 38908850 C T VPS41 Missense_Mutation p.E22K 0.52 tolerated(0.6) benign(0.014) TCGA-GN-A8LK-06 7 4153893 4153893 G A SDK1 Silent p.R1270R 0.67 TCGA-GN-A8LK-06 7 41729958 41729958 C T INHBA Missense_Mutation p.E191K 0.60 tolerated(0.6) benign(0.142) TCGA-GN-A8LK-06 7 43483967 43483967 G T HECW1 Missense_Mutation p.G399V 0.37 tolerated_low_confidence(0.32) benign(0.031) TCGA-GN-A8LK-06 7 44047244 44047244 G A SPDYE1 Intron 0.43 TCGA-GN-A8LK-06 7 44741211 44741211 C T OGDH Missense_Mutation p.P877S 0.53 tolerated(0.58) benign(0.119) TCGA-GN-A8LK-06 7 47880097 47880097 G A PKD1L1 Silent p.P1838P 0.37 TCGA-GN-A8LK-06 7 47880098 47880098 G A PKD1L1 Missense_Mutation p.P1838L 0.37 deleterious(0.02) possibly_damaging(0.817) TCGA-GN-A8LK-06 7 47886531 47886531 T C PKD1L1 Missense_Mutation p.K1700R 0.47 tolerated(0.33) benign(0.042) TCGA-GN-A8LK-06 7 50468097 50468099 CTC TA IKZF1 Frame_Shift_Del p.Q404Rfs*14 0.28 TCGA-GN-A8LK-06 7 50468203 50468203 C T IKZF1 Missense_Mutation p.H438Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 7 50531073 50531073 G A DDC Silent p.I433I 0.34 TCGA-GN-A8LK-06 7 5104812 5104812 C T RBAK Silent p.T575T 0.42 TCGA-GN-A8LK-06 7 53103734 53103734 C T POM121L12 Silent p.L124L 0.45 TCGA-GN-A8LK-06 7 53103927 53103927 G A POM121L12 Missense_Mutation p.G188E 0.99 deleterious(0.03) probably_damaging(0.988) TCGA-GN-A8LK-06 7 55273215 55273215 G T EGFR Nonsense_Mutation p.E1180* 0.40 TCGA-GN-A8LK-06 7 5983067 5983067 G A RSPH10B Missense_Mutation p.S549F 0.39 deleterious(0) possibly_damaging(0.753) TCGA-GN-A8LK-06 7 64168083 64168083 C T ZNF107 Silent p.P467P 0.45 TCGA-GN-A8LK-06 7 64363747 64363747 A T ZNF273 Missense_Mutation p.I18F 0.42 tolerated_low_confidence(0.78) benign(0) TCGA-GN-A8LK-06 7 64465465 64465465 C T ERV3-1 Intron 0.55 TCGA-GN-A8LK-06 7 66098342 66098342 C T KCTD7 Silent p.T75T 0.50 TCGA-GN-A8LK-06 7 73790646 73790646 C T CLIP2 Missense_Mutation p.P639S 0.50 tolerated(0.54) benign(0.057) TCGA-GN-A8LK-06 7 73791141 73791141 C T CLIP2 Nonsense_Mutation p.Q804* 0.33 TCGA-GN-A8LK-06 7 82508766 82508766 C T PCLO Missense_Mutation p.G4514E 0.38 unknown(0) TCGA-GN-A8LK-06 7 82544381 82544381 C T PCLO Silent p.R4307R 0.62 TCGA-GN-A8LK-06 7 82579349 82579349 G A PCLO Nonsense_Mutation p.Q3519* 0.59 TCGA-GN-A8LK-06 7 82580577 82580577 G A PCLO Silent p.S3109S 0.36 TCGA-GN-A8LK-06 7 82784084 82784084 G A PCLO Missense_Mutation p.P625S 0.50 unknown(0) TCGA-GN-A8LK-06 7 83021935 83021935 G A SEMA3E Missense_Mutation p.P535S 0.39 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 7 83592543 83592543 C T SEMA3A Missense_Mutation p.R613Q 0.48 tolerated(0.44) benign(0) TCGA-GN-A8LK-06 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.49 tolerated(0.05) probably_damaging(0.997) TCGA-GN-A8LK-06 7 86415688 86415688 G A GRM3 Missense_Mutation p.D194N 0.40 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 7 86416380 86416380 C T GRM3 Silent p.I424I 0.39 TCGA-GN-A8LK-06 7 86522310 86522310 C T KIAA1324L Missense_Mutation p.G931E 0.46 deleterious(0.01) probably_damaging(0.969) TCGA-GN-A8LK-06 7 87035663 87035663 C T ABCB4 Missense_Mutation p.E1150K 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-GN-A8LK-06 7 8790773 8790773 C T NXPH1 Missense_Mutation p.R64C 0.51 tolerated(0.14) possibly_damaging(0.625) TCGA-GN-A8LK-06 7 88963393 88963393 C T ZNF804B Missense_Mutation p.S366F 0.53 tolerated(0.42) benign(0.055) TCGA-GN-A8LK-06 7 88963604 88963604 G A ZNF804B Silent p.V436V 0.44 TCGA-GN-A8LK-06 7 91735013 91735013 G A AKAP9 Silent p.R3784R 0.52 TCGA-GN-A8LK-06 7 91866995 91866995 G A KRIT1 Missense_Mutation p.P114L 0.45 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 7 92730994 92730994 G A SAMD9 Missense_Mutation p.R1473C 0.40 tolerated(0.07) benign(0.102) TCGA-GN-A8LK-06 7 92763178 92763178 C T SAMD9L Missense_Mutation p.E703K 0.42 tolerated(0.19) benign(0.098) TCGA-GN-A8LK-06 7 92844726 92844726 G A HEPACAM2 Missense_Mutation p.P235S 0.44 tolerated(0.15) probably_damaging(1) TCGA-GN-A8LK-06 7 93073043 93073043 G A CALCR Silent p.F259F 0.49 TCGA-GN-A8LK-06 7 935028 935029 CC T GET4 Frame_Shift_Del p.P318Lfs*90 0.26 TCGA-GN-A8LK-06 7 94055152 94055152 G A COL1A2 Missense_Mutation p.G976R 0.56 unknown(0) TCGA-GN-A8LK-06 7 94539548 94539548 G A PPP1R9A Silent p.G41G 0.28 TCGA-GN-A8LK-06 7 94855325 94855325 C T PPP1R9A Missense_Mutation p.P670L 0.43 deleterious(0.04) possibly_damaging(0.791) TCGA-GN-A8LK-06 7 94915519 94915519 A G PPP1R9A Missense_Mutation p.N1204S 0.40 tolerated(0.13) possibly_damaging(0.82) TCGA-GN-A8LK-06 7 94944740 94944740 C T PON1 Missense_Mutation p.M88I 0.47 tolerated(0.12) benign(0.06) TCGA-GN-A8LK-06 7 97862900 97862900 G T TECPR1 Nonsense_Mutation p.S502* 0.55 TCGA-GN-A8LK-06 7 99008689 99008689 C T BUD31 Intron 0.43 TCGA-GN-A8LK-06 7 99128871 99128871 C T ZKSCAN5 Nonsense_Mutation p.Q507* 0.49 TCGA-GN-A8LK-06 7 99274144 99274144 C T CYP3A5 Intron 0.47 TCGA-GN-A8LK-06 7 99308459 99308459 C T CYP3A7 Missense_Mutation p.E308K 0.44 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LK-06 7 99359689 99359689 C T CYP3A4 Missense_Mutation p.E410K 0.51 deleterious(0.05) possibly_damaging(0.711) TCGA-GN-A8LK-06 7 99441781 99441781 A G CYP3A43 Silent p.Q78Q 0.50 TCGA-GN-A8LK-06 7 99996934 99996934 A G PILRA Missense_Mutation p.E243G 0.32 tolerated(0.07) probably_damaging(0.968) TCGA-GN-A8LK-06 8 100133639 100133639 G A VPS13B Missense_Mutation p.G391E 0.54 deleterious(0) probably_damaging(0.972) TCGA-GN-A8LK-06 8 100654655 100654655 G A VPS13B Missense_Mutation p.R1971K 0.46 tolerated(0.14) benign(0.009) TCGA-GN-A8LK-06 8 101271322 101271322 G A RNF19A Missense_Mutation p.A660V 0.45 tolerated_low_confidence(0.09) benign(0.116) TCGA-GN-A8LK-06 8 102570945 102570945 C T GRHL2 Missense_Mutation p.P195S 0.55 tolerated(0.48) benign(0.003) TCGA-GN-A8LK-06 8 106573624 106573624 G A ZFPM2 Missense_Mutation p.R112Q 0.44 tolerated(0.1) probably_damaging(0.996) TCGA-GN-A8LK-06 8 106811101 106811101 C T ZFPM2 Silent p.L297L 0.34 TCGA-GN-A8LK-06 8 108264215 108264215 G A ANGPT1 Silent p.S455S 0.47 TCGA-GN-A8LK-06 8 110457308 110457308 G A PKHD1L1 Missense_Mutation p.G1737E 0.50 deleterious(0.02) possibly_damaging(0.768) TCGA-GN-A8LK-06 8 110457838 110457838 G A PKHD1L1 Missense_Mutation p.D1914N 0.59 tolerated(0.3) benign(0.003) TCGA-GN-A8LK-06 8 110505951 110505951 G A PKHD1L1 Missense_Mutation p.G3433E 0.42 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 8 113256635 113256635 G A CSMD3 Missense_Mutation p.P3464S 0.47 deleterious(0) possibly_damaging(0.456) TCGA-GN-A8LK-06 8 113988173 113988173 T G CSMD3 Missense_Mutation p.K412T 0.50 tolerated(0.29) benign(0.001) TCGA-GN-A8LK-06 8 117954887 117954887 G A AARD Missense_Mutation p.E139K 0.40 tolerated(0.06) benign(0.047) TCGA-GN-A8LK-06 8 118831970 118831970 G A EXT1 Missense_Mutation p.S494F 0.50 deleterious(0.03) benign(0.144) TCGA-GN-A8LK-06 8 11995976 11995976 C T USP17L2 Silent p.L98L 0.91 TCGA-GN-A8LK-06 8 121471476 121471476 C T MTBP Missense_Mutation p.P257S 0.46 deleterious(0.01) probably_damaging(0.982) TCGA-GN-A8LK-06 8 124195086 124195086 G A FAM83A 5'UTR 0.50 TCGA-GN-A8LK-06 8 124204054 124204054 C T FAM83A Silent p.I164I 0.49 TCGA-GN-A8LK-06 8 124253610 124253610 G A C8orf76 5'UTR 0.50 TCGA-GN-A8LK-06 8 124663834 124663834 G A KLHL38 Missense_Mutation p.P445S 0.50 tolerated(0.16) benign(0.045) TCGA-GN-A8LK-06 8 12583241 12583241 G A LONRF1 Missense_Mutation p.L720F 0.48 tolerated(0.14) possibly_damaging(0.889) TCGA-GN-A8LK-06 8 126056821 126056821 C T KIAA0196 Missense_Mutation p.G875D 0.49 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 8 133855033 133855033 T C PHF20L1 Silent p.V887V 0.49 TCGA-GN-A8LK-06 8 139839015 139839015 G A COL22A1 Silent p.F285F 0.43 TCGA-GN-A8LK-06 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.39 tolerated(0.06) benign(0.052) TCGA-GN-A8LK-06 8 142188165 142188165 G A DENND3 Splice_Site p.X823_splice 0.56 TCGA-GN-A8LK-06 8 143425367 143425367 C T TSNARE1 Silent p.Q235Q 0.36 TCGA-GN-A8LK-06 8 143957797 143957797 G A CYP11B1 Nonsense_Mutation p.Q272* 0.55 TCGA-GN-A8LK-06 8 144297295 144297295 G A GPIHBP1 Missense_Mutation p.G153R 0.51 tolerated(0.29) probably_damaging(0.979) TCGA-GN-A8LK-06 8 144406695 144406695 G A TOP1MT Missense_Mutation p.S259F 0.54 tolerated(0.08) benign(0.141) TCGA-GN-A8LK-06 8 144408436 144408436 C T TOP1MT Missense_Mutation p.D147N 0.53 tolerated(0.36) benign(0.048) TCGA-GN-A8LK-06 8 144408437 144408437 C T TOP1MT Silent p.V146V 0.53 TCGA-GN-A8LK-06 8 144511826 144511826 C T MAFA Missense_Mutation p.E251K 0.21 deleterious(0) probably_damaging(0.966) TCGA-GN-A8LK-06 8 144995650 144995650 G A PLEC Missense_Mutation p.P2917L 0.48 probably_damaging(0.998) TCGA-GN-A8LK-06 8 145234385 145234385 C T MROH1 Silent p.L66L 0.45 TCGA-GN-A8LK-06 8 145727029 145727029 C T PPP1R16A Missense_Mutation p.P444S 0.57 tolerated(0.28) benign(0.004) TCGA-GN-A8LK-06 8 145731401 145731401 C T GPT Silent p.A281A 0.32 TCGA-GN-A8LK-06 8 145999884 145999884 C T ZNF34 Silent p.K150K 0.56 TCGA-GN-A8LK-06 8 15605946 15605946 C T TUSC3 Missense_Mutation p.R334C 0.41 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LK-06 8 15621917 15621917 G A TUSC3 3'UTR 0.67 TCGA-GN-A8LK-06 8 1645313 1645313 G A DLGAP2 Missense_Mutation p.D853N 0.42 tolerated(0.98) probably_damaging(0.999) TCGA-GN-A8LK-06 8 17611803 17611803 G A MTUS1 Missense_Mutation p.P505L 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 8 17827109 17827109 C T PCM1 Missense_Mutation p.P1146S 0.47 deleterious(0.02) benign(0.132) TCGA-GN-A8LK-06 8 18490207 18490207 C T PSD3 Missense_Mutation p.D776N 0.42 deleterious(0.01) possibly_damaging(0.641) TCGA-GN-A8LK-06 8 18490208 18490208 C T PSD3 Silent p.L775L 0.42 TCGA-GN-A8LK-06 8 19277981 19277981 A T CSGALNACT1 Missense_Mutation p.F334L 0.53 deleterious(0) possibly_damaging(0.817) TCGA-GN-A8LK-06 8 2065709 2065709 A C MYOM2 Missense_Mutation p.T1141P 0.51 deleterious(0) probably_damaging(0.94) TCGA-GN-A8LK-06 8 2065710 2065710 C T MYOM2 Missense_Mutation p.T1141M 0.51 deleterious(0) probably_damaging(0.981) TCGA-GN-A8LK-06 8 21560440 21560440 T C GFRA2 Silent p.P365P 0.41 TCGA-GN-A8LK-06 8 21560441 21560441 G A GFRA2 Missense_Mutation p.P365L 0.53 deleterious(0.05) benign(0.048) TCGA-GN-A8LK-06 8 22140560 22140560 G A PIWIL2 Missense_Mutation p.G147R 0.56 deleterious(0.01) possibly_damaging(0.704) TCGA-GN-A8LK-06 8 23225883 23225883 G A LOXL2 5'UTR 0.44 TCGA-GN-A8LK-06 8 24324374 24324374 G A ADAM7 Missense_Mutation p.G151E 0.25 tolerated(0.66) possibly_damaging(0.773) TCGA-GN-A8LK-06 8 24346688 24346688 T G ADAM7 Missense_Mutation p.F370V 0.20 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 8 24813295 24813295 C T CTD-2168K21.2 5'Flank 0.61 TCGA-GN-A8LK-06 8 25132910 25132910 C T DOCK5 Silent p.F59F 0.25 TCGA-GN-A8LK-06 8 25265591 25265591 T G DOCK5 Missense_Mutation p.I1729S 0.42 tolerated(0.75) benign(0.031) TCGA-GN-A8LK-06 8 27455996 27455996 C T CLU Missense_Mutation p.E441K 0.56 tolerated(0.4) benign(0.038) TCGA-GN-A8LK-06 8 27762152 27762152 C T SCARA5 Intron 0.46 TCGA-GN-A8LK-06 8 27884509 27884509 G A NUGGC Nonsense_Mutation p.Q739* 0.47 TCGA-GN-A8LK-06 8 2949069 2949069 G A CSMD1 Silent p.T2418T 0.42 TCGA-GN-A8LK-06 8 3205537 3205537 G A CSMD1 Silent p.L1151L 0.26 TCGA-GN-A8LK-06 8 38137059 38137059 T G WHSC1L1 Silent p.A1253A 0.52 TCGA-GN-A8LK-06 8 39128412 39128412 G A ADAM32 Missense_Mutation p.S727N 0.53 tolerated(0.45) benign(0.012) TCGA-GN-A8LK-06 8 39468088 39468088 C T ADAM18 Missense_Mutation p.P129S 0.36 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 8 39468211 39468211 C T ADAM18 Missense_Mutation p.P170S 0.49 tolerated(0.4) benign(0.014) TCGA-GN-A8LK-06 8 39780096 39780096 C T IDO1 Missense_Mutation p.R155C 0.49 deleterious(0) probably_damaging(0.942) TCGA-GN-A8LK-06 8 41591543 41591543 C T ANK1 Silent p.V91V 0.51 TCGA-GN-A8LK-06 8 48792099 48792099 G A PRKDC Missense_Mutation p.P1729S 0.31 possibly_damaging(0.543) TCGA-GN-A8LK-06 8 48813002 48813002 A G PRKDC Missense_Mutation p.F1099L 0.60 probably_damaging(0.992) TCGA-GN-A8LK-06 8 51503464 51503464 C T SNTG1 Missense_Mutation p.P279L 0.42 tolerated(0.05) possibly_damaging(0.63) TCGA-GN-A8LK-06 8 52321990 52321990 C G PXDNL Missense_Mutation p.G732R 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A8LK-06 8 53092706 53092706 C T ST18 Missense_Mutation p.E85K 0.45 tolerated(0.11) benign(0.003) TCGA-GN-A8LK-06 8 54142035 54142035 T C OPRK1 Missense_Mutation p.N322S 0.53 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 8 55537349 55537349 G A RP1 Missense_Mutation p.E303K 0.40 tolerated(0.21) benign(0.012) TCGA-GN-A8LK-06 8 55539576 55539576 C T RP1 Missense_Mutation p.S1045L 0.53 tolerated(0.36) benign(0.004) TCGA-GN-A8LK-06 8 55540720 55540720 G A RP1 Silent p.R1426R 0.34 TCGA-GN-A8LK-06 8 55541960 55541960 G A RP1 Missense_Mutation p.E1840K 0.53 tolerated(1) benign(0) TCGA-GN-A8LK-06 8 56436794 56436794 G A XKR4 3'UTR 0.47 TCGA-GN-A8LK-06 8 56864641 56864641 C T LYN Missense_Mutation p.P202S 0.48 tolerated(0.99) benign(0.005) TCGA-GN-A8LK-06 8 57025594 57025594 G A MOS Silent p.V316V 0.46 TCGA-GN-A8LK-06 8 57213841 57213841 A G SDR16C5 3'UTR 0.67 TCGA-GN-A8LK-06 8 57218183 57218183 A T SDR16C5 Nonsense_Mutation p.L270* 0.35 TCGA-GN-A8LK-06 8 57219232 57219232 T G SDR16C5 Intron 0.47 TCGA-GN-A8LK-06 8 61769330 61769330 C T CHD7 Silent p.L2497L 0.53 TCGA-GN-A8LK-06 8 6793610 6793610 C T DEFA4 Missense_Mutation p.E76K 0.45 deleterious(0.01) probably_damaging(0.914) TCGA-GN-A8LK-06 8 68074064 68074064 C T CSPP1 Missense_Mutation p.P848S 0.49 deleterious(0.02) benign(0.27) TCGA-GN-A8LK-06 8 70744170 70744170 C T SLCO5A1 Missense_Mutation p.E247K 0.35 tolerated(0.22) benign(0.005) TCGA-GN-A8LK-06 8 72184021 72184021 G A EYA1 Missense_Mutation p.P313L 0.39 deleterious(0.01) probably_damaging(0.962) TCGA-GN-A8LK-06 8 72211462 72211462 G A EYA1 Missense_Mutation p.P216S 0.51 tolerated(0.35) benign(0.053) TCGA-GN-A8LK-06 8 7320381 7320381 C T SPAG11B Missense_Mutation p.G21E 0.31 deleterious(0.05) probably_damaging(1) TCGA-GN-A8LK-06 8 74939059 74939059 G A LY96 Missense_Mutation p.G123R 0.39 tolerated(0.66) benign(0.347) TCGA-GN-A8LK-06 8 76456152 76456152 C T HNF4G Silent p.S65S 0.55 TCGA-GN-A8LK-06 8 76471053 76471053 G A HNF4G Missense_Mutation p.D292N 0.43 tolerated(0.2) benign(0.005) TCGA-GN-A8LK-06 8 77616301 77616301 G A ZFHX4 5'UTR 0.38 TCGA-GN-A8LK-06 8 77616306 77616306 C T ZFHX4 5'UTR 0.45 TCGA-GN-A8LK-06 8 77764186 77764186 G A ZFHX4 Missense_Mutation p.D1677N 0.45 benign(0) TCGA-GN-A8LK-06 8 7807600 7807600 G A ZNF705B Missense_Mutation p.G62E 1.00 deleterious(0.04) benign(0.038) TCGA-GN-A8LK-06 8 86360407 86360407 G A CA3 3'UTR 0.38 TCGA-GN-A8LK-06 8 87163717 87163717 C T ATP6V0D2 Missense_Mutation p.A280V 0.56 tolerated(0.32) benign(0.039) TCGA-GN-A8LK-06 8 87241923 87241923 T A SLC7A13 Missense_Mutation p.N195I 0.48 deleterious(0) probably_damaging(0.971) TCGA-GN-A8LK-06 8 87738785 87738785 C T CNGB3 Missense_Mutation p.M104I 0.46 tolerated(0.44) benign(0) TCGA-GN-A8LK-06 8 88885381 88885381 C T DCAF4L2 Silent p.V273V 0.46 TCGA-GN-A8LK-06 8 91929779 91929779 C T NECAB1 Silent p.T139T 0.46 TCGA-GN-A8LK-06 9 100843159 100843159 C T NANS Missense_Mutation p.A222V 0.30 tolerated(0.4) benign(0.009) TCGA-GN-A8LK-06 9 101235433 101235433 C T GABBR2 Missense_Mutation p.G332R 0.60 deleterious(0) probably_damaging(0.991) TCGA-GN-A8LK-06 9 101798470 101798470 G A COL15A1 Missense_Mutation p.G770R 0.70 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LK-06 9 101824542 101824542 C T COL15A1 Missense_Mutation p.P1183S 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-GN-A8LK-06 9 101980531 101980531 G A ALG2 Silent p.L312L 0.64 TCGA-GN-A8LK-06 9 104133706 104133706 G A BAAT 5'UTR 0.61 TCGA-GN-A8LK-06 9 104170525 104170525 C T ZNF189 Missense_Mutation p.R159C 0.34 tolerated(0.19) possibly_damaging(0.457) TCGA-GN-A8LK-06 9 104192056 104192056 C T ALDOB Missense_Mutation p.G102E 0.62 deleterious(0) probably_damaging(0.976) TCGA-GN-A8LK-06 9 104357194 104357194 C T PPP3R2 Missense_Mutation p.E7K 0.34 deleterious(0.03) benign(0.032) TCGA-GN-A8LK-06 9 104432655 104432655 C T GRIN3A Missense_Mutation p.G680E 0.62 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 9 104433350 104433350 G A GRIN3A Silent p.S448S 0.37 TCGA-GN-A8LK-06 9 105765478 105765478 C T CYLC2 Missense_Mutation p.P38L 0.21 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 9 107298355 107298355 G A OR13C3 Missense_Mutation p.S247F 0.25 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 9 107332344 107332344 G A OR13C8 Missense_Mutation p.R299Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 9 107380386 107380386 T A OR13C9 Missense_Mutation p.M34L 0.31 deleterious(0.01) benign(0.001) TCGA-GN-A8LK-06 9 111642368 111642368 G A IKBKAP Nonsense_Mutation p.R1142* 0.20 TCGA-GN-A8LK-06 9 111812593 111812593 A T TMEM245 Missense_Mutation p.I698N 0.68 tolerated(0.09) possibly_damaging(0.533) TCGA-GN-A8LK-06 9 111947803 111947803 C T EPB41L4B Missense_Mutation p.G795E 0.60 tolerated_low_confidence(0.08) benign(0.009) TCGA-GN-A8LK-06 9 113166617 113166617 G A SVEP1 Missense_Mutation p.S3219L 0.66 possibly_damaging(0.861) TCGA-GN-A8LK-06 9 113496562 113496562 C T MUSK Silent p.S220S 0.69 TCGA-GN-A8LK-06 9 113530209 113530209 C T MUSK Missense_Mutation p.P344S 0.62 tolerated(0.12) benign(0.205) TCGA-GN-A8LK-06 9 114128831 114128831 G A KIAA0368 Silent p.V1908V 0.66 TCGA-GN-A8LK-06 9 114304697 114304697 C T ZNF483 Silent p.P494P 0.54 TCGA-GN-A8LK-06 9 114449028 114449028 G A C9orf84 3'UTR 0.38 TCGA-GN-A8LK-06 9 114454751 114454751 G A C9orf84 Missense_Mutation p.S1105F 0.63 deleterious(0.03) probably_damaging(0.972) TCGA-GN-A8LK-06 9 114475436 114475436 C T C9orf84 Missense_Mutation p.R747K 0.59 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 9 114490105 114490105 C T C9orf84 Missense_Mutation p.D484N 0.60 tolerated(0.13) benign(0.012) TCGA-GN-A8LK-06 9 116132080 116132080 G A BSPRY Missense_Mutation p.M289I 0.62 tolerated(0.48) benign(0.001) TCGA-GN-A8LK-06 9 116770794 116770794 G A ZNF618 Silent p.V206V 0.36 TCGA-GN-A8LK-06 9 117093881 117093881 C T ORM2 Silent p.F121F 0.28 TCGA-GN-A8LK-06 9 118950247 118950247 C T PAPPA Silent p.I410I 0.66 TCGA-GN-A8LK-06 9 119802190 119802190 G A ASTN2 Missense_Mutation p.S393F 0.21 deleterious(0) unknown(0) TCGA-GN-A8LK-06 9 120474950 120474950 C T TLR4 Missense_Mutation p.L182F 0.58 tolerated(0.4) probably_damaging(0.995) TCGA-GN-A8LK-06 9 121929515 121929515 G A BRINP1 Silent p.A711A 0.35 TCGA-GN-A8LK-06 9 121929908 121929908 C T BRINP1 Silent p.G580G 0.70 TCGA-GN-A8LK-06 9 121976080 121976080 G A BRINP1 Intron 0.70 TCGA-GN-A8LK-06 9 123742390 123742390 G A C5 Missense_Mutation p.S1210L 0.31 tolerated(0.06) possibly_damaging(0.551) TCGA-GN-A8LK-06 9 124544645 124544645 C T DAB2IP Silent p.A1118A 0.29 TCGA-GN-A8LK-06 9 125289161 125289161 C A OR1N1 Missense_Mutation p.V138F 0.31 tolerated(0.1) benign(0.007) TCGA-GN-A8LK-06 9 125289540 125289540 G A OR1N1 Silent p.F11F 0.68 TCGA-GN-A8LK-06 9 125330648 125330648 G A OR1L8 Silent p.L37L 0.59 TCGA-GN-A8LK-06 9 125680953 125680953 G A ZBTB26 Silent p.L421L 0.64 TCGA-GN-A8LK-06 9 125895184 125895184 C T STRBP Missense_Mutation p.G613R 0.29 deleterious_low_confidence(0.03) benign(0.346) TCGA-GN-A8LK-06 9 125910114 125910114 C T STRBP Missense_Mutation p.D361N 0.30 tolerated(0.07) probably_damaging(0.94) TCGA-GN-A8LK-06 9 127920662 127920662 C T PPP6C Splice_Site p.X117_splice 0.25 TCGA-GN-A8LK-06 9 128109262 128109262 C T GAPVD1 Intron 0.81 TCGA-GN-A8LK-06 9 130258300 130258300 T C LRSAM1 Missense_Mutation p.Y586H 0.48 tolerated(0.06) probably_damaging(0.974) TCGA-GN-A8LK-06 9 130444757 130444757 C T STXBP1 Silent p.F540F 0.21 TCGA-GN-A8LK-06 9 130511731 130511731 G A SH2D3C Missense_Mutation p.H300Y 0.47 tolerated(1) benign(0.013) TCGA-GN-A8LK-06 9 130700157 130700157 C T DPM2 5'UTR 0.31 TCGA-GN-A8LK-06 9 130869460 130869460 T G SLC25A25 Splice_Site p.X443_splice 0.75 TCGA-GN-A8LK-06 9 131021480 131021480 G A GOLGA2 Missense_Mutation p.A661V 0.68 tolerated(0.72) benign(0.026) TCGA-GN-A8LK-06 9 131247009 131247009 G A ODF2 Silent p.K378K 0.25 TCGA-GN-A8LK-06 9 131271249 131271249 C T GLE1 Missense_Mutation p.P65L 0.60 tolerated(0.26) benign(0.003) TCGA-GN-A8LK-06 9 131284944 131284944 C T GLE1 Intron 0.67 TCGA-GN-A8LK-06 9 131515116 131515116 G A ZER1 Silent p.I253I 0.66 TCGA-GN-A8LK-06 9 131670100 131670100 C T LRRC8A Silent p.I219I 0.62 TCGA-GN-A8LK-06 9 132641776 132641776 C T USP20 Intron 0.18 TCGA-GN-A8LK-06 9 135277742 135277742 G A TTF1 Missense_Mutation p.S156L 0.33 tolerated(0.06) possibly_damaging(0.587) TCGA-GN-A8LK-06 9 135487555 135487555 A G DDX31 Missense_Mutation p.V743A 0.57 tolerated(0.14) benign(0.17) TCGA-GN-A8LK-06 9 135554062 135554062 C G GTF3C4 Silent p.G352G 0.25 TCGA-GN-A8LK-06 9 135947093 135947093 C T CEL Missense_Mutation p.P738L 0.75 deleterious_low_confidence(0) benign(0.413) TCGA-GN-A8LK-06 9 136082680 136082680 C T OBP2B Silent p.R107R 0.26 TCGA-GN-A8LK-06 9 136337173 136337175 GAA - SLC2A6 In_Frame_Del p.F498del 0.30 TCGA-GN-A8LK-06 9 136582557 136582557 G A SARDH Silent p.F347F 0.60 TCGA-GN-A8LK-06 9 136633669 136633669 G A VAV2 Silent p.A828A 0.76 TCGA-GN-A8LK-06 9 136642550 136642550 G A VAV2 Silent p.F642F 0.59 TCGA-GN-A8LK-06 9 137622114 137622114 C T COL5A1 Silent p.P319P 0.38 TCGA-GN-A8LK-06 9 137658850 137658850 C T COL5A1 Missense_Mutation p.P713L 0.50 unknown(0) TCGA-GN-A8LK-06 9 137696899 137696899 C T COL5A1 Missense_Mutation p.P1065S 0.69 unknown(0) TCGA-GN-A8LK-06 9 137709671 137709671 G A COL5A1 Silent p.G1408G 0.46 TCGA-GN-A8LK-06 9 137713971 137713971 G A COL5A1 Missense_Mutation p.G1528E 0.59 unknown(0) TCGA-GN-A8LK-06 9 138378735 138378735 C T PPP1R26 Silent p.A793A 0.43 TCGA-GN-A8LK-06 9 138454265 138454265 C T PAEP Silent p.I74I 0.32 TCGA-GN-A8LK-06 9 138657008 138657008 C T KCNT1 Silent p.F389F 0.65 TCGA-GN-A8LK-06 9 138657015 138657015 G A KCNT1 Missense_Mutation p.E392K 0.34 deleterious(0) probably_damaging(0.988) TCGA-GN-A8LK-06 9 138710917 138710917 C A CAMSAP1 Nonsense_Mutation p.E1300* 0.59 TCGA-GN-A8LK-06 9 139272176 139272176 A C SNAPC4 Missense_Mutation p.F1368C 0.37 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 9 139360820 139360820 C T SEC16A Missense_Mutation p.E1342K 0.60 deleterious(0) probably_damaging(0.954) TCGA-GN-A8LK-06 9 139741172 139741172 G A C9orf172 Missense_Mutation p.G769D 0.62 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 9 139889900 139889900 G A CLIC3 Missense_Mutation p.P88L 0.26 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LK-06 9 140389516 140389516 G A PNPLA7 Missense_Mutation p.A699V 0.66 tolerated(0.98) possibly_damaging(0.758) TCGA-GN-A8LK-06 9 140972704 140972704 C T CACNA1B Silent p.S1696S 0.53 TCGA-GN-A8LK-06 9 14770777 14770777 G A FREM1 Missense_Mutation p.R1629C 1.00 deleterious(0.02) possibly_damaging(0.696) TCGA-GN-A8LK-06 9 15510257 15510257 G A PSIP1 5'UTR 0.96 TCGA-GN-A8LK-06 9 19622258 19622258 C T SLC24A2 Splice_Site p.X323_splice 0.96 TCGA-GN-A8LK-06 9 20414146 20414146 G A MLLT3 Missense_Mutation p.S233F 0.94 deleterious(0.01) benign(0.011) TCGA-GN-A8LK-06 9 21202112 21202112 G A IFNA7 Missense_Mutation p.S18F 0.94 deleterious(0.02) probably_damaging(0.95) TCGA-GN-A8LK-06 9 21974715 21974732 GCAGCGCCCCCGCCTCCA - CDKN2A In_Frame_Del p.L32_L37del 0.66 TCGA-GN-A8LK-06 9 2643332 2643332 C T VLDLR Silent p.P207P 0.93 TCGA-GN-A8LK-06 9 3257142 3257142 C T RFX3 Missense_Mutation p.D555N 0.88 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LK-06 9 34381508 34381508 C T C9orf24 Intron 0.90 TCGA-GN-A8LK-06 9 35057495 35057495 G A VCP Silent p.I731I 0.93 TCGA-GN-A8LK-06 9 35378389 35378389 C T UNC13B Silent p.T638T 0.93 TCGA-GN-A8LK-06 9 35546483 35546483 C T RUSC2 5'UTR 0.90 TCGA-GN-A8LK-06 9 35674114 35674114 C T CA9 Missense_Mutation p.S53F 1.00 deleterious_low_confidence(0.03) unknown(0) TCGA-GN-A8LK-06 9 35722158 35722158 G A TLN1 Silent p.A302A 0.93 TCGA-GN-A8LK-06 9 35826155 35826155 C T FAM221B Missense_Mutation p.E2K 0.95 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 9 35846050 35846050 G A TMEM8B Missense_Mutation p.V120M 1.00 tolerated(0.12) benign(0.233) TCGA-GN-A8LK-06 9 377042 377042 C T DOCK8 Silent p.I757I 0.89 TCGA-GN-A8LK-06 9 39073758 39073758 C T CNTNAP3 3'UTR 0.45 TCGA-GN-A8LK-06 9 39073843 39073843 C T CNTNAP3 3'UTR 0.30 TCGA-GN-A8LK-06 9 39361104 39361104 G A SPATA31A1 Silent p.R1114R 0.43 TCGA-GN-A8LK-06 9 4118059 4118059 G A GLIS3 Silent p.L473L 0.85 TCGA-GN-A8LK-06 9 5763599 5763599 C T KIAA1432 Missense_Mutation p.P858S 0.87 tolerated(0.16) possibly_damaging(0.479) TCGA-GN-A8LK-06 9 6241732 6241732 C T IL33 Missense_Mutation p.S13F 1.00 deleterious(0) possibly_damaging(0.874) TCGA-GN-A8LK-06 9 71687588 71687588 C T FXN Silent p.S181S 0.25 TCGA-GN-A8LK-06 9 72962009 72962009 G T SMC5 Missense_Mutation p.D866Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LK-06 9 74305104 74305104 G A TMEM2 Missense_Mutation p.P1252L 0.26 deleterious(0) benign(0.007) TCGA-GN-A8LK-06 9 77397374 77397374 G A TRPM6 Missense_Mutation p.S1038F 0.64 deleterious(0.02) possibly_damaging(0.756) TCGA-GN-A8LK-06 9 7799800 7799800 G A TMEM261 5'UTR 1.00 TCGA-GN-A8LK-06 9 7799801 7799801 G A TMEM261 5'UTR 1.00 TCGA-GN-A8LK-06 9 78853897 78853897 C T PCSK5 Silent p.F963F 0.27 TCGA-GN-A8LK-06 9 79323693 79323693 C T PRUNE2 Missense_Mutation p.R1166Q 0.68 tolerated(0.51) possibly_damaging(0.723) TCGA-GN-A8LK-06 9 79325773 79325773 G A PRUNE2 Missense_Mutation p.P473S 0.52 deleterious(0) probably_damaging(0.952) TCGA-GN-A8LK-06 9 79917940 79917940 C T VPS13A Missense_Mutation p.P1308S 0.59 deleterious(0.02) probably_damaging(1) TCGA-GN-A8LK-06 9 79999634 79999634 C T VPS13A Intron 0.31 TCGA-GN-A8LK-06 9 80144169 80144169 C T GNA14 Missense_Mutation p.G42E 0.29 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 9 82340116 82340116 C T TLE4 3'UTR 0.46 TCGA-GN-A8LK-06 9 84531083 84531083 A C SPATA31D5P RNA 0.69 TCGA-GN-A8LK-06 9 84532962 84532962 C T SPATA31D5P RNA 0.77 TCGA-GN-A8LK-06 9 85612030 85612030 A C RASEF Missense_Mutation p.I606S 0.53 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 9 88631562 88631562 T A NAA35 Missense_Mutation p.S559R 0.58 tolerated(0.22) benign(0.199) TCGA-GN-A8LK-06 9 95277342 95277342 C T ECM2 Missense_Mutation p.E209K 0.63 tolerated(0.14) benign(0.051) TCGA-GN-A8LK-06 9 96082704 96082704 C T WNK2 3'Flank 0.31 TCGA-GN-A8LK-06 9 98209333 98209333 G A PTCH1 Missense_Mutation p.P1402L 0.56 tolerated_low_confidence(0.32) benign(0.014) TCGA-GN-A8LK-06 9 98215885 98215885 G A PTCH1 Silent p.I1108I 0.27 TCGA-GN-A8LK-06 9 990196 990196 G A DMRT3 Missense_Mutation p.G204R 0.95 tolerated(0.54) benign(0.013) TCGA-GN-A8LK-06 X 100333959 100333959 G A TMEM35 5'UTR 0.97 TCGA-GN-A8LK-06 X 101572382 101572382 G A NXF2 Missense_Mutation p.E94K 0.47 tolerated(0.16) benign(0.066) TCGA-GN-A8LK-06 X 107316573 107316573 C T VSIG1 Missense_Mutation p.S257F 0.96 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 X 107430455 107430455 C T COL4A6 Missense_Mutation p.E609K 0.99 benign(0.361) TCGA-GN-A8LK-06 X 107431198 107431198 G A COL4A6 Silent p.L550L 0.95 TCGA-GN-A8LK-06 X 107434709 107434709 C T COL4A6 Missense_Mutation p.G413E 0.95 unknown(0) TCGA-GN-A8LK-06 X 107807122 107807122 G A COL4A5 Missense_Mutation p.G81E 1.00 unknown(0) TCGA-GN-A8LK-06 X 110654106 110654106 G T DCX Missense_Mutation p.Q33K 0.97 deleterious_low_confidence(0) unknown(0) TCGA-GN-A8LK-06 X 114540829 114540829 G A LUZP4 Silent p.G134G 0.98 TCGA-GN-A8LK-06 X 119249703 119249703 T G RHOXF1 Missense_Mutation p.T24P 0.97 tolerated(0.26) benign(0.072) TCGA-GN-A8LK-06 X 120009101 120009101 G A CT47B1 Nonsense_Mutation p.Q142* 0.94 TCGA-GN-A8LK-06 X 122616727 122616727 G A GRIA3 Missense_Mutation p.M839I 0.96 deleterious(0.05) probably_damaging(0.989) TCGA-GN-A8LK-06 X 124029838 124029838 C T TENM1 Missense_Mutation p.G157E 0.95 tolerated_low_confidence(0.47) benign(0.105) TCGA-GN-A8LK-06 X 12734835 12734835 G A FRMPD4 Missense_Mutation p.E753K 0.95 deleterious(0.01) benign(0.31) TCGA-GN-A8LK-06 X 12939382 12939382 C T TLR8 Silent p.L741L 0.96 TCGA-GN-A8LK-06 X 13645370 13645370 A T EGFL6 Missense_Mutation p.Y510F 0.99 tolerated(0.63) benign(0.01) TCGA-GN-A8LK-06 X 13651265 13651265 G A EGFL6 3'UTR 1.00 TCGA-GN-A8LK-06 X 140335748 140335748 C T SPANXC Missense_Mutation p.E66K 0.22 deleterious(0.01) possibly_damaging(0.746) TCGA-GN-A8LK-06 X 1407721 1407721 G A CSF2RA Nonsense_Mutation p.W138* 0.48 TCGA-GN-A8LK-06 X 140953354 140953354 G A MAGEC3 Missense_Mutation p.R74Q 1.00 tolerated_low_confidence(0.2) benign(0.003) TCGA-GN-A8LK-06 X 140969206 140969206 C T MAGEC3 Missense_Mutation p.P178L 0.96 tolerated(0.34) possibly_damaging(0.713) TCGA-GN-A8LK-06 X 149931156 149931156 G A MTMR1 Missense_Mutation p.G651D 0.95 tolerated(0.57) benign(0.191) TCGA-GN-A8LK-06 X 149962194 149962194 C T CD99L2 Missense_Mutation p.G156S 0.96 tolerated(0.05) possibly_damaging(0.859) TCGA-GN-A8LK-06 X 150348727 150348727 G A GPR50 Silent p.Q224Q 0.94 TCGA-GN-A8LK-06 X 150844505 150844505 G A PASD1 Missense_Mutation p.D738N 0.96 tolerated_low_confidence(0.57) benign(0) TCGA-GN-A8LK-06 X 150868507 150868507 G A PRRG3 Missense_Mutation p.R16Q 0.94 deleterious(0.04) benign(0.045) TCGA-GN-A8LK-06 X 150891286 150891286 C T FATE1 3'UTR 0.94 TCGA-GN-A8LK-06 X 150912884 150912884 G A CNGA2 Missense_Mutation p.E637K 0.93 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LK-06 X 151283788 151283788 G A RP11-1007I13.4 RNA 0.99 TCGA-GN-A8LK-06 X 152085867 152085867 C T ZNF185 Missense_Mutation p.P101L 0.98 tolerated(0.07) benign(0.274) TCGA-GN-A8LK-06 X 152482568 152482568 G A MAGEA1 Missense_Mutation p.S148F 0.97 tolerated(0.08) possibly_damaging(0.45) TCGA-GN-A8LK-06 X 153061952 153061952 C T SSR4 Missense_Mutation p.S44F 0.94 tolerated(0.09) probably_damaging(0.977) TCGA-GN-A8LK-06 X 153594424 153594424 G A FLNA Missense_Mutation p.P466L 0.91 deleterious(0.01) probably_damaging(0.978) TCGA-GN-A8LK-06 X 153694314 153694314 C T PLXNA3 Missense_Mutation p.R857W 0.97 deleterious(0.04) benign(0.004) TCGA-GN-A8LK-06 X 15376144 15376144 G A FIGF Missense_Mutation p.T158I 0.94 tolerated(0.05) probably_damaging(0.967) TCGA-GN-A8LK-06 X 154227779 154227779 G A F8 Silent p.I80I 0.99 TCGA-GN-A8LK-06 X 1584968 1584968 C T P2RY8 Missense_Mutation p.D162N 0.43 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LK-06 X 23801520 23801520 C T SAT1 Silent p.L18L 0.88 TCGA-GN-A8LK-06 X 29414421 29414421 G A IL1RAPL1 Missense_Mutation p.E137K 0.94 deleterious(0.03) benign(0.129) TCGA-GN-A8LK-06 X 29417357 29417357 G A IL1RAPL1 Missense_Mutation p.G212E 1.00 deleterious(0) probably_damaging(1) TCGA-GN-A8LK-06 X 2942185 2942185 G A ARSH Missense_Mutation p.G342E 0.96 deleterious(0) possibly_damaging(0.75) TCGA-GN-A8LK-06 X 3241544 3241544 C T MXRA5 Missense_Mutation p.D728N 0.94 tolerated(0.22) possibly_damaging(0.862) TCGA-GN-A8LK-06 X 32632551 32632551 C T DMD Missense_Mutation p.D451N 0.94 probably_damaging(0.932) TCGA-GN-A8LK-06 X 34149933 34149933 G A FAM47A Missense_Mutation p.P155S 1.00 tolerated(0.06) probably_damaging(0.986) TCGA-GN-A8LK-06 X 35993909 35993909 C T CXorf22 Silent p.F864F 0.98 TCGA-GN-A8LK-06 X 37027158 37027158 G A FAM47C Silent p.Q225Q 0.97 TCGA-GN-A8LK-06 X 47272080 47272080 C T ZNF157 Missense_Mutation p.S203L 1.00 deleterious(0.01) probably_damaging(0.994) TCGA-GN-A8LK-06 X 54099701 54099701 G A FAM120C Missense_Mutation p.S1019F 1.00 tolerated_low_confidence(0.12) benign(0.007) TCGA-GN-A8LK-06 X 54475648 54475648 G A FGD1 Silent p.T734T 0.94 TCGA-GN-A8LK-06 X 56591749 56591749 G A UBQLN2 Silent p.G481G 1.00 TCGA-GN-A8LK-06 X 57313322 57313322 G T FAAH2 Missense_Mutation p.G22C 1.00 tolerated(0.17) possibly_damaging(0.84) TCGA-GN-A8LK-06 X 63413174 63413174 G A AMER1 5'UTR 0.98 TCGA-GN-A8LK-06 X 70073133 70073133 G A TEX11 Silent p.L139L 0.97 TCGA-GN-A8LK-06 X 70472625 70472625 C T ZMYM3 Missense_Mutation p.E161K 0.91 tolerated_low_confidence(1) benign(0.007) TCGA-GN-A8LK-06 X 70787479 70787479 C T OGT Missense_Mutation p.P907S 0.93 tolerated(0.12) benign(0.02) TCGA-GN-A8LK-06 X 71821854 71821854 G A PHKA1 Missense_Mutation p.S1020L 0.96 tolerated(0.22) benign(0.001) TCGA-GN-A8LK-06 X 72433692 72433692 C T NAP1L2 Missense_Mutation p.E213K 1.00 tolerated(0.22) possibly_damaging(0.538) TCGA-GN-A8LK-06 X 73066717 73066717 G A XIST RNA 0.94 TCGA-GN-A8LK-06 X 73960281 73960281 C T KIAA2022 Missense_Mutation p.A1371T 0.94 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LK-06 X 73960796 73960796 T A KIAA2022 Missense_Mutation p.K1199I 0.97 deleterious(0) possibly_damaging(0.89) TCGA-GN-A8LK-06 X 78011362 78011362 C T LPAR4 Silent p.S332S 0.95 TCGA-GN-A8LK-06 X 79698481 79698481 C T FAM46D Missense_Mutation p.S148F 0.99 deleterious(0) probably_damaging(0.996) TCGA-GN-A8LK-06 X 79698872 79698872 G A FAM46D Silent p.K278K 0.98 TCGA-GN-A8LK-06 X 8434098 8434098 G A VCX3B Missense_Mutation p.E139K 0.44 tolerated(0.87) unknown(0) TCGA-GN-A8LK-06 X 84606457 84606457 C T POF1B Missense_Mutation p.E147K 0.95 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GN-A8LK-06 X 8766512 8766512 G A FAM9A Missense_Mutation p.P77S 0.99 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-GN-A8LK-06 X 96139918 96139918 C A RPA4 Missense_Mutation p.D203E 0.95 tolerated(0.5) benign(0.047) TCGA-GN-A8LK-06 Y 4967846 4967846 G A PCDH11Y Missense_Mutation p.V743I 0.82 tolerated(0.06) benign(0.003) TCGA-GN-A8LK-06 Y 9195478 9195478 C T TSPY8 Silent p.Y9Y 0.16 TCGA-GN-A8LL-06 11 36597572 36597572 A C RAG1 Silent p.P906P 0.97 TCGA-GN-A8LL-06 11 73104900 73104900 G C RELT Missense_Mutation p.R215P 0.18 tolerated(0.2) possibly_damaging(0.878) TCGA-GN-A8LL-06 12 118675939 118675939 C T TAOK3 Missense_Mutation p.A126T 0.79 deleterious(0) probably_damaging(0.988) TCGA-GN-A8LL-06 12 20790067 20790067 A G PDE3A Missense_Mutation p.M679V 0.27 tolerated(0.18) benign(0.358) TCGA-GN-A8LL-06 12 47471163 47471163 C A AMIGO2 3'UTR 0.31 TCGA-GN-A8LL-06 12 52966421 52966421 G A KRT74 Silent p.L168L 0.06 TCGA-GN-A8LL-06 12 81660742 81660742 G A PPFIA2 Nonsense_Mutation p.R1182* 0.36 TCGA-GN-A8LL-06 13 93518699 93518699 T C GPC5 3'UTR 0.90 TCGA-GN-A8LL-06 14 24780762 24780765 CGGG - LTB4R 5'Flank 0.46 TCGA-GN-A8LL-06 15 102190479 102190479 G T TM2D3 Intron 0.22 TCGA-GN-A8LL-06 16 2373381 2373381 C G ABCA3 Intron 0.61 TCGA-GN-A8LL-06 16 76532474 76532474 A C CNTNAP4 Missense_Mutation p.T677P 0.30 deleterious(0) probably_damaging(0.939) TCGA-GN-A8LL-06 17 11684402 11684402 C A DNAH9 Missense_Mutation p.F2543L 0.36 possibly_damaging(0.687) TCGA-GN-A8LL-06 17 11684417 11684417 C T DNAH9 Silent p.N2548N 0.38 TCGA-GN-A8LL-06 17 11686996 11686996 C T DNAH9 Silent p.I2584I 0.42 TCGA-GN-A8LL-06 17 11687625 11687625 C A DNAH9 Missense_Mutation p.F2610L 0.43 probably_damaging(0.941) TCGA-GN-A8LL-06 17 11687685 11687685 C T DNAH9 Silent p.I2630I 0.46 TCGA-GN-A8LL-06 17 11687826 11687826 C T DNAH9 Silent p.F2677F 0.49 TCGA-GN-A8LL-06 17 5048844 5048844 A G USP6 Missense_Mutation p.M713V 0.85 tolerated_low_confidence(0.5) probably_damaging(0.981) TCGA-GN-A8LL-06 18 32392019 32392019 T C DTNA Missense_Mutation p.F182S 0.06 deleterious(0.01) probably_damaging(0.979) TCGA-GN-A8LL-06 19 11892235 11892235 G A ZNF441 Silent p.K532K 0.34 TCGA-GN-A8LL-06 19 14730160 14730160 A C EMR3 3'UTR 0.24 TCGA-GN-A8LL-06 19 16652714 16652714 A G CHERP Missense_Mutation p.Y56H 0.64 deleterious(0) probably_damaging(0.992) TCGA-GN-A8LL-06 19 19414558 19414558 C T SUGP1 Missense_Mutation p.D213N 0.30 tolerated(0.26) benign(0.02) TCGA-GN-A8LL-06 19 19414559 19414559 C T SUGP1 Silent p.E212E 0.30 TCGA-GN-A8LL-06 19 52249958 52249958 A G FPR1 Missense_Mutation p.L97P 0.56 deleterious(0.01) probably_damaging(0.992) TCGA-GN-A8LL-06 1 160057685 160057685 A T KCNJ9 3'UTR 0.21 TCGA-GN-A8LL-06 1 177915624 177915624 A G SEC16B Missense_Mutation p.M569T 0.62 tolerated(0.05) benign(0.044) TCGA-GN-A8LL-06 1 198723533 198723533 C T PTPRC Silent p.F1215F 0.27 TCGA-GN-A8LL-06 1 21049368 21049368 C T SH2D5 Missense_Mutation p.A317T 0.15 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LL-06 20 3728930 3728930 G A HSPA12B Missense_Mutation p.V248I 0.23 tolerated(1) benign(0.008) TCGA-GN-A8LL-06 20 3765559 3765559 A C CENPB Missense_Mutation p.D524E 0.61 tolerated_low_confidence(0.76) probably_damaging(0.918) TCGA-GN-A8LL-06 20 3903965 3903965 G A PANK2 3'UTR 0.33 TCGA-GN-A8LL-06 20 3904030 3904030 G A PANK2 3'UTR 0.49 TCGA-GN-A8LL-06 20 3904121 3904121 G A PANK2 3'UTR 0.50 TCGA-GN-A8LL-06 21 45802690 45802690 G C TRPM2 Missense_Mutation p.Q435H 0.53 deleterious(0.02) benign(0.062) TCGA-GN-A8LL-06 21 46117961 46117961 G C TSPEAR Intron 0.38 TCGA-GN-A8LL-06 22 38506610 38506610 C T BAIAP2L2 5'UTR 0.22 TCGA-GN-A8LL-06 22 38509561 38509561 C T PLA2G6 Missense_Mutation p.S712N 0.46 deleterious(0.04) probably_damaging(0.928) TCGA-GN-A8LL-06 22 42606230 42606230 C T TCF20 Silent p.V1694V 0.23 TCGA-GN-A8LL-06 22 42606346 42606346 C T TCF20 Missense_Mutation p.E1656K 0.20 possibly_damaging(0.621) TCGA-GN-A8LL-06 22 42606372 42606372 C T TCF20 Missense_Mutation p.C1647Y 0.20 probably_damaging(0.999) TCGA-GN-A8LL-06 2 102956639 102956639 G A IL1RL1 Missense_Mutation p.M118I 0.06 tolerated(0.79) benign(0.003) TCGA-GN-A8LL-06 2 158115274 158115274 C A GALNT5 Missense_Mutation p.P227Q 0.18 tolerated_low_confidence(0.15) benign(0.095) TCGA-GN-A8LL-06 2 158594116 158594116 A G ACVR1 Missense_Mutation p.L486P 0.50 deleterious(0) probably_damaging(1) TCGA-GN-A8LL-06 2 207176151 207176151 G A ZDBF2 Missense_Mutation p.R2300H 0.45 tolerated(0.12) benign(0) TCGA-GN-A8LL-06 2 241069390 241069390 G A MYEOV2 Nonsense_Mutation p.R107* 0.86 TCGA-GN-A8LL-06 3 1427412 1427412 G A CNTN6 Missense_Mutation p.V879I 0.32 deleterious(0.04) benign(0.171) TCGA-GN-A8LL-06 4 121675787 121675787 C T PRDM5 Missense_Mutation p.R515H 0.50 deleterious(0) probably_damaging(0.973) TCGA-GN-A8LL-06 4 144136069 144136069 A G USP38 Missense_Mutation p.I980M 0.09 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LL-06 4 169158556 169158556 T G DDX60 Missense_Mutation p.N1431T 0.34 tolerated(0.11) benign(0.211) TCGA-GN-A8LL-06 5 133644351 133644351 C G CDKL3 Missense_Mutation p.E317Q 0.49 tolerated(0.52) possibly_damaging(0.741) TCGA-GN-A8LL-06 5 141017790 141017790 C A RELL2 5'UTR 0.10 TCGA-GN-A8LL-06 5 150072862 150072862 C T RBM22 Missense_Mutation p.A307T 0.39 tolerated(0.11) benign(0.068) TCGA-GN-A8LL-06 6 11190491 11190498 CGTCTTTG - NEDD9 Frame_Shift_Del p.A535Gfs*4 0.21 TCGA-GN-A8LL-06 6 160225024 160225024 T A PNLDC1 Nonsense_Mutation p.Y81* 0.06 TCGA-GN-A8LL-06 6 25515986 25515986 C T LRRC16A Silent p.S572S 0.24 TCGA-GN-A8LL-06 6 27368880 27368880 C A ZNF391 Missense_Mutation p.T244N 0.26 deleterious(0) probably_damaging(0.986) TCGA-GN-A8LL-06 7 117396661 117396661 A G CTTNBP2 Missense_Mutation p.V1099A 0.41 deleterious(0) probably_damaging(0.913) TCGA-GN-A8LL-06 7 44153775 44153780 AGGAGA - AEBP1 In_Frame_Del p.K1133_E1134del 0.70 TCGA-GN-A8LL-06 7 65223001 65223001 G A SNORA22 3'Flank 0.14 TCGA-GN-A8LL-06 8 144943294 144943294 C T EPPK1 Silent p.Q1376Q 0.67 TCGA-GN-A8LL-06 8 22067083 22067083 G A BMP1 Missense_Mutation p.G901S 0.30 tolerated(0.29) benign(0.26) TCGA-GN-A8LL-06 8 60031469 60031469 G C TOX Missense_Mutation p.C26W 0.15 tolerated(0.09) probably_damaging(0.971) TCGA-GN-A8LL-06 8 73850037 73850037 T C KCNB2 Missense_Mutation p.L816S 0.07 deleterious_low_confidence(0.04) benign(0.002) TCGA-GN-A8LL-06 9 134458001 134458001 A G RAPGEF1 Missense_Mutation p.I1000T 0.35 deleterious(0) probably_damaging(0.992) TCGA-GN-A8LL-06 9 20781927 20781927 A T FOCAD Missense_Mutation p.K399M 0.81 tolerated(0.09) benign(0.003) TCGA-GN-A8LL-06 9 8389307 8389307 C T PTPRD Silent p.G1437G 0.86 TCGA-GN-A8LL-06 9 96291655 96291655 C T FAM120A Silent p.A509A 0.55 TCGA-GN-A8LL-06 9 96291721 96291721 C T FAM120A Silent p.C531C 0.69 TCGA-GN-A8LL-06 X 128710444 128710445 - A OCRL Frame_Shift_Ins p.S678Kfs*48 0.47 TCGA-GN-A8LL-06 X 155239694 155239694 G C IL9R Missense_Mutation p.G396R 0.88 deleterious(0) benign(0.275) TCGA-GN-A8LL-06 X 55020368 55020368 T A PFKFB1 Missense_Mutation p.S25C 0.28 benign(0) TCGA-GN-A8LL-06 X 64138932 64138932 G T ZC4H2 Missense_Mutation p.P184Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 10 104592323 104592323 G A CYP17A1 Missense_Mutation p.R362C 0.34 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LN-01 10 107012634 107012634 G A SORCS3 Silent p.R1069R 0.46 TCGA-GN-A8LN-01 10 129903614 129903614 C T MKI67 Missense_Mutation p.A2164T 0.05 tolerated(0.15) possibly_damaging(0.87) TCGA-GN-A8LN-01 10 45920547 45920547 G A ALOX5 Silent p.L267L 0.72 TCGA-GN-A8LN-01 10 55581864 55581864 G A PCDH15 Silent p.D1876D 0.03 TCGA-GN-A8LN-01 10 61865770 61865770 T A ANK3 Missense_Mutation p.E1074V 0.29 probably_damaging(0.994) TCGA-GN-A8LN-01 10 68686879 68686879 C T LRRTM3 Missense_Mutation p.R69C 0.28 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 10 7214511 7214511 G A SFMBT2 Silent p.F699F 0.54 TCGA-GN-A8LN-01 10 72360482 72360482 G A PRF1 Silent p.F59F 0.59 TCGA-GN-A8LN-01 10 81060537 81060537 G C ZMIZ1 Missense_Mutation p.Q619H 0.58 possibly_damaging(0.681) TCGA-GN-A8LN-01 10 88950367 88950367 C T FAM35A Missense_Mutation p.P812L 0.52 deleterious(0) possibly_damaging(0.675) TCGA-GN-A8LN-01 11 13514156 13514156 C T PTH Silent p.S48S 0.26 TCGA-GN-A8LN-01 11 15197470 15197470 G A INSC Silent p.R127R 0.28 TCGA-GN-A8LN-01 11 17809725 17809725 C G SERGEF Missense_Mutation p.Q428H 0.03 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-GN-A8LN-01 11 25004695 25004695 A C LUZP2 Missense_Mutation p.K207N 0.41 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LN-01 11 34501844 34501844 C T ELF5 Missense_Mutation p.G240E 0.40 tolerated(1) probably_damaging(0.991) TCGA-GN-A8LN-01 11 55406089 55406089 G A OR4P4 Missense_Mutation p.E86K 0.38 tolerated(0.29) benign(0.031) TCGA-GN-A8LN-01 11 56344303 56344303 G A OR5M10 Missense_Mutation p.L299F 0.04 deleterious(0) benign(0.032) TCGA-GN-A8LN-01 11 65088480 65088480 C T CDC42EP2 Silent p.F37F 0.46 TCGA-GN-A8LN-01 11 65810683 65810683 G A GAL3ST3 Silent p.F197F 0.46 TCGA-GN-A8LN-01 11 65984210 65984210 C T PACS1 Silent p.T314T 0.54 TCGA-GN-A8LN-01 11 66325588 66325588 C T CTD-3074O7.2 3'Flank 0.36 TCGA-GN-A8LN-01 11 6644017 6644017 G A DCHS1 Missense_Mutation p.R2964C 0.78 deleterious(0) probably_damaging(0.987) TCGA-GN-A8LN-01 11 6644018 6644018 G A DCHS1 Silent p.A2963A 0.78 TCGA-GN-A8LN-01 11 70007786 70007786 G A ANO1 Silent p.L613L 0.36 TCGA-GN-A8LN-01 11 94318623 94318623 G C PIWIL4 Missense_Mutation p.K216N 0.43 tolerated(0.62) benign(0.003) TCGA-GN-A8LN-01 12 104709583 104709583 T C TXNRD1 Silent p.G213G 0.37 TCGA-GN-A8LN-01 12 123201437 123201437 G A HCAR3 5'UTR 0.58 TCGA-GN-A8LN-01 12 21196337 21196337 G A SLCO1B7 Missense_Mutation p.G219E 0.47 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LN-01 12 247785 247785 C T IQSEC3 Missense_Mutation p.T419M 0.50 deleterious(0.03) possibly_damaging(0.556) TCGA-GN-A8LN-01 12 344273 344273 G A SLC6A13 Missense_Mutation p.R272C 0.30 deleterious(0) probably_damaging(0.982) TCGA-GN-A8LN-01 12 40637425 40637425 C T LRRK2 Silent p.F260F 0.48 TCGA-GN-A8LN-01 12 48377192 48377192 A C COL2A1 Silent p.G675G 0.40 TCGA-GN-A8LN-01 12 48596187 48596187 C T OR10AD1 Missense_Mutation p.E297K 0.44 deleterious(0) probably_damaging(0.993) TCGA-GN-A8LN-01 12 56555361 56555361 C T MYL6 3'Flank 0.64 TCGA-GN-A8LN-01 12 64808718 64808718 C T XPOT Missense_Mutation p.S31F 0.34 deleterious(0) possibly_damaging(0.484) TCGA-GN-A8LN-01 12 75692498 75692498 C T CAPS2 Missense_Mutation p.G357E 0.43 deleterious(0.01) probably_damaging(0.962) TCGA-GN-A8LN-01 12 7842409 7842409 C A GDF3 3'UTR 0.53 TCGA-GN-A8LN-01 12 79679658 79679658 A G SYT1 Silent p.K86K 0.29 TCGA-GN-A8LN-01 12 8803172 8803172 C T MFAP5 Silent p.E87E 0.46 TCGA-GN-A8LN-01 12 9309839 9309839 G A PZP Missense_Mutation p.S1161F 0.50 deleterious(0) possibly_damaging(0.505) TCGA-GN-A8LN-01 12 994204 994204 G C WNK1 Missense_Mutation p.V1412L 0.48 tolerated_low_confidence(0.14) benign(0.409) TCGA-GN-A8LN-01 13 19748259 19748259 C T TUBA3C Missense_Mutation p.G366E 0.41 deleterious_low_confidence(0.02) benign(0.434) TCGA-GN-A8LN-01 13 29600341 29600341 C T MTUS2 Silent p.V512V 0.33 TCGA-GN-A8LN-01 13 42793828 42793828 C T DGKH Missense_Mutation p.P1114S 0.36 tolerated(0.97) benign(0.013) TCGA-GN-A8LN-01 13 94197569 94197569 G A GPC6 Missense_Mutation p.E72K 0.42 deleterious(0) probably_damaging(0.994) TCGA-GN-A8LN-01 14 100374027 100374027 C T EML1 Missense_Mutation p.S373F 0.77 deleterious(0) probably_damaging(0.972) TCGA-GN-A8LN-01 14 24551827 24551827 G A NRL Silent p.T77T 0.86 TCGA-GN-A8LN-01 14 52169252 52169252 C T FRMD6 Missense_Mutation p.P106L 0.83 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 14 92353558 92353558 C T FBLN5 Missense_Mutation p.E240K 0.08 tolerated(0.72) benign(0.01) TCGA-GN-A8LN-01 15 28458946 28458946 G A HERC2 Missense_Mutation p.T2243I 0.23 benign(0.164) TCGA-GN-A8LN-01 15 31206141 31206141 C T FAN1 Missense_Mutation p.S553L 0.31 deleterious(0) possibly_damaging(0.755) TCGA-GN-A8LN-01 15 40580904 40580904 G A PLCB2 3'UTR 0.31 TCGA-GN-A8LN-01 15 40659494 40659494 G A DISP2 Missense_Mutation p.R394H 0.07 tolerated(0.59) benign(0.001) TCGA-GN-A8LN-01 15 40751136 40751136 A C BAHD1 Missense_Mutation p.D158A 0.60 tolerated(0.48) probably_damaging(0.993) TCGA-GN-A8LN-01 15 41165149 41165149 C T RHOV 3'UTR 0.33 TCGA-GN-A8LN-01 15 43038186 43038186 G A TTBK2 Missense_Mutation p.S1181L 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GN-A8LN-01 15 50833248 50833248 G A USP50 Missense_Mutation p.R220W 0.54 deleterious(0) benign(0.139) TCGA-GN-A8LN-01 15 51780176 51780176 G A DMXL2 Missense_Mutation p.A1731V 0.29 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 15 72459340 72459340 G A GRAMD2 Nonsense_Mutation p.Q156* 0.21 TCGA-GN-A8LN-01 15 75981602 75981602 G A CSPG4 Missense_Mutation p.P602S 0.20 tolerated(0.34) benign(0.184) TCGA-GN-A8LN-01 15 86125142 86125142 C T AKAP13 Silent p.S1281S 0.31 TCGA-GN-A8LN-01 15 86129006 86129006 G A AKAP13 Silent p.G1371G 0.23 TCGA-GN-A8LN-01 15 91185245 91185245 C T CRTC3 Missense_Mutation p.P578L 0.53 tolerated(0.57) benign(0.009) TCGA-GN-A8LN-01 15 99901603 99901603 C T LRRC28 Missense_Mutation p.T253I 0.24 deleterious(0.05) benign(0.157) TCGA-GN-A8LN-01 16 17221669 17221669 C T XYLT1 Missense_Mutation p.D693N 0.43 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 16 19451725 19451725 C T TMC5 Missense_Mutation p.S122L 0.39 tolerated_low_confidence(0.08) benign(0.04) TCGA-GN-A8LN-01 16 20359560 20359560 C T UMOD Missense_Mutation p.D320N 0.39 tolerated(0.3) possibly_damaging(0.748) TCGA-GN-A8LN-01 16 22000061 22000061 C T PDZD9 Missense_Mutation p.R28Q 0.37 tolerated(0.11) possibly_damaging(0.676) TCGA-GN-A8LN-01 16 46712869 46712869 C T VPS35 Missense_Mutation p.E236K 0.42 tolerated(0.06) benign(0.063) TCGA-GN-A8LN-01 16 49671463 49671463 C T ZNF423 Missense_Mutation p.E534K 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-GN-A8LN-01 16 50353864 50353864 G A BRD7 Nonsense_Mutation p.R613* 0.40 TCGA-GN-A8LN-01 16 56599027 56599027 C T MT4 5'UTR 0.48 TCGA-GN-A8LN-01 16 58075658 58075658 C T MMP15 Missense_Mutation p.P350S 0.27 tolerated(0.06) benign(0.259) TCGA-GN-A8LN-01 16 61935122 61935122 C T CDH8 Missense_Mutation p.G170R 0.46 deleterious(0) possibly_damaging(0.594) TCGA-GN-A8LN-01 16 70841938 70841938 T A HYDIN Nonsense_Mutation p.K4971* 0.38 TCGA-GN-A8LN-01 16 71103359 71103359 G A HYDIN Silent p.I595I 0.30 TCGA-GN-A8LN-01 16 7382928 7382928 T G RBFOX1 5'UTR 0.07 TCGA-GN-A8LN-01 16 74908251 74908251 A - WDR59 Frame_Shift_Del p.H928Tfs*12 0.30 TCGA-GN-A8LN-01 16 82032717 82032717 C T SDR42E1 Silent p.%3D 0.52 TCGA-GN-A8LN-01 16 88691146 88691146 C T ZC3H18 Missense_Mutation p.P679S 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-GN-A8LN-01 17 10354105 10354105 C T MYH4 Missense_Mutation p.E1325K 0.33 deleterious(0.02) possibly_damaging(0.731) TCGA-GN-A8LN-01 17 10441060 10441060 C T MYH2 Silent p.E503E 0.56 TCGA-GN-A8LN-01 17 12044491 12044491 G A MAP2K4 Missense_Mutation p.E372K 0.49 tolerated(0.33) benign(0.049) TCGA-GN-A8LN-01 17 12620734 12620734 C T MYOCD Silent p.L83L 0.29 TCGA-GN-A8LN-01 17 12655875 12655875 C T MYOCD Missense_Mutation p.P424S 0.55 tolerated(0.08) probably_damaging(1) TCGA-GN-A8LN-01 17 15516121 15516121 C T RP11-385D13.1 Missense_Mutation p.G649E 0.24 deleterious_low_confidence(0.04) benign(0.024) TCGA-GN-A8LN-01 17 263553 263553 C T C17orf97 Missense_Mutation p.P307S 0.39 tolerated_low_confidence(0.49) benign(0) TCGA-GN-A8LN-01 17 27041887 27041887 C T RAB34 Silent p.V269V 0.06 TCGA-GN-A8LN-01 17 2908695 2908695 C T RAP1GAP2 Silent p.T411T 0.31 TCGA-GN-A8LN-01 17 31267865 31267865 C T TMEM98 Silent p.L179L 0.58 TCGA-GN-A8LN-01 17 38645131 38645131 C T TNS4 Missense_Mutation p.G177D 0.34 tolerated(0.42) benign(0.124) TCGA-GN-A8LN-01 17 38816440 38816440 G A KRT222 Missense_Mutation p.S82F 0.29 deleterious(0) probably_damaging(0.938) TCGA-GN-A8LN-01 17 42328698 42328698 C T SLC4A1 Silent p.V828V 0.18 TCGA-GN-A8LN-01 17 42458334 42458334 G T ITGA2B Missense_Mutation p.Q436K 0.61 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 17 43552718 43552718 G A PLEKHM1 Missense_Mutation p.S224F 0.63 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 17 46622305 46622305 G A HOXB2 5'UTR 0.44 TCGA-GN-A8LN-01 17 46622306 46622306 G A HOXB2 5'UTR 0.46 TCGA-GN-A8LN-01 17 48272987 48272987 G A COL1A1 Missense_Mutation p.P366S 0.33 unknown(0) TCGA-GN-A8LN-01 17 5436302 5436302 C T NLRP1 Missense_Mutation p.E1046K 0.30 tolerated(0.76) benign(0.003) TCGA-GN-A8LN-01 17 58012624 58012624 C T RPS6KB1 Missense_Mutation p.P314L 0.22 tolerated(0.07) probably_damaging(0.94) TCGA-GN-A8LN-01 17 79428108 79428108 C T RP11-1055B8.7 Missense_Mutation p.P2140L 0.43 probably_damaging(0.999) TCGA-GN-A8LN-01 18 10485742 10485742 C T APCDD1 Missense_Mutation p.S353L 0.56 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 18 39550512 39550512 A T PIK3C3 Intron 0.18 TCGA-GN-A8LN-01 18 60036528 60036528 C T TNFRSF11A Missense_Mutation p.L460F 0.31 tolerated(0.43) benign(0.006) TCGA-GN-A8LN-01 18 66721424 66721424 C T CCDC102B 3'UTR 0.25 TCGA-GN-A8LN-01 18 77894620 77894620 C T ADNP2 Missense_Mutation p.R442W 0.22 tolerated(0.09) possibly_damaging(0.857) TCGA-GN-A8LN-01 19 13356070 13356070 G A CACNA1A Missense_Mutation p.R1626C 0.19 probably_damaging(0.942) TCGA-GN-A8LN-01 19 17366391 17366391 G A USHBP1 Missense_Mutation p.R499W 0.44 deleterious(0.03) possibly_damaging(0.891) TCGA-GN-A8LN-01 19 17743624 17743624 G A UNC13A Missense_Mutation p.P1132L 0.29 deleterious(0) benign(0.114) TCGA-GN-A8LN-01 19 3789329 3789329 G A MATK Missense_Mutation p.P6L 0.39 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-GN-A8LN-01 19 38987539 38987539 C T RYR1 Missense_Mutation p.S2279F 0.26 benign(0.391) TCGA-GN-A8LN-01 19 40364198 40364198 C A FCGBP Missense_Mutation p.R4815L 0.39 probably_damaging(0.944) TCGA-GN-A8LN-01 19 43529031 43529031 G A PSG11 Missense_Mutation p.S81L 0.37 tolerated(0.06) probably_damaging(0.94) TCGA-GN-A8LN-01 19 45021160 45021160 G A CEACAM20 RNA 0.64 TCGA-GN-A8LN-01 19 4510650 4510650 C T PLIN4 Missense_Mutation p.E1094K 0.50 tolerated(0.2) benign(0.043) TCGA-GN-A8LN-01 19 47491306 47491306 A C ARHGAP35 Missense_Mutation p.Q1296P 0.34 tolerated(0.15) probably_damaging(0.997) TCGA-GN-A8LN-01 19 47912789 47912789 G A MEIS3 Nonsense_Mutation p.R205* 0.57 TCGA-GN-A8LN-01 19 53885527 53885527 C T ZNF525 3'UTR 0.27 TCGA-GN-A8LN-01 19 53950534 53950534 C T ZNF761 Intron 0.45 TCGA-GN-A8LN-01 19 56539801 56539801 G A NLRP5 Silent p.R734R 0.46 TCGA-GN-A8LN-01 19 57132841 57132841 C T ZNF71 Silent p.P62P 0.52 TCGA-GN-A8LN-01 19 58118305 58118305 C T ZNF530 Missense_Mutation p.S471L 0.35 tolerated(0.49) possibly_damaging(0.659) TCGA-GN-A8LN-01 19 7830721 7830721 G A CLEC4M Missense_Mutation p.E138K 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-GN-A8LN-01 19 873448 873448 C T MED16 Splice_Site p.X635_splice 0.32 TCGA-GN-A8LN-01 19 873566 873566 C T MED16 Missense_Mutation p.M596I 0.34 deleterious(0.02) benign(0.074) TCGA-GN-A8LN-01 19 9018518 9018518 G T MUC16 Silent p.I12552I 0.56 TCGA-GN-A8LN-01 19 9060190 9060190 G A MUC16 Missense_Mutation p.P9086S 0.58 unknown(0) TCGA-GN-A8LN-01 19 9361800 9361800 C T OR7E24 Silent p.V27V 0.19 TCGA-GN-A8LN-01 1 10713742 10713742 G A CASZ1 Missense_Mutation p.S791F 0.08 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-GN-A8LN-01 1 110172989 110172989 C T AMPD2 Silent p.S760S 0.40 TCGA-GN-A8LN-01 1 111216471 111216471 C T KCNA3 Missense_Mutation p.A321T 0.44 tolerated(0.56) benign(0.015) TCGA-GN-A8LN-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.46 tolerated(0.06) benign(0.006) TCGA-GN-A8LN-01 1 118584535 118584535 G A SPAG17 Missense_Mutation p.S982F 0.39 tolerated(0.08) benign(0.11) TCGA-GN-A8LN-01 1 14107922 14107922 G A PRDM2 Missense_Mutation p.R1211Q 0.83 unknown(0) TCGA-GN-A8LN-01 1 157804206 157804206 C T CD5L Missense_Mutation p.E237K 0.48 tolerated(0.61) benign(0.035) TCGA-GN-A8LN-01 1 158606550 158606550 C A SPTA1 Nonsense_Mutation p.E1731* 0.35 TCGA-GN-A8LN-01 1 158606551 158606551 C A SPTA1 Missense_Mutation p.E1730D 0.35 deleterious(0.01) benign(0.226) TCGA-GN-A8LN-01 1 165601496 165601496 G A MGST3 Intron 0.37 TCGA-GN-A8LN-01 1 179314183 179314183 C T SOAT1 Silent p.V363V 0.33 TCGA-GN-A8LN-01 1 181021455 181021455 C T MR1 Missense_Mutation p.P230L 0.45 tolerated(0.07) probably_damaging(1) TCGA-GN-A8LN-01 1 181765849 181765849 G A CACNA1E Missense_Mutation p.R2085Q 0.28 deleterious(0.01) possibly_damaging(0.614) TCGA-GN-A8LN-01 1 18808193 18808193 G A KLHDC7A Missense_Mutation p.E240K 0.87 tolerated(0.05) benign(0.009) TCGA-GN-A8LN-01 1 196621247 196621247 A T CFH 5'UTR 0.29 TCGA-GN-A8LN-01 1 205027052 205027052 G A CNTN2 Nonsense_Mutation p.W25* 0.39 TCGA-GN-A8LN-01 1 210267771 210267771 G A SYT14 Missense_Mutation p.E228K 0.33 tolerated(0.1) benign(0.177) TCGA-GN-A8LN-01 1 213290705 213290705 C G RPS6KC1 Missense_Mutation p.A142G 0.39 tolerated(0.09) benign(0.003) TCGA-GN-A8LN-01 1 226822506 226822506 G A ITPKB Missense_Mutation p.P903S 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-GN-A8LN-01 1 228433284 228433284 G A OBSCN Missense_Mutation p.G1310S 0.30 probably_damaging(0.969) TCGA-GN-A8LN-01 1 228559418 228559418 G A OBSCN Missense_Mutation p.G7937D 0.42 benign(0.201) TCGA-GN-A8LN-01 1 237802362 237802362 C T RYR2 Missense_Mutation p.R2326W 0.53 probably_damaging(0.998) TCGA-GN-A8LN-01 1 2452267 2452267 G A PANK4 Silent p.F167F 0.45 TCGA-GN-A8LN-01 1 247836269 247836269 G A OR13G1 Silent p.F25F 0.41 TCGA-GN-A8LN-01 1 247902536 247902536 C T OR14K1 Missense_Mutation p.S207L 0.45 tolerated(0.66) benign(0.031) TCGA-GN-A8LN-01 1 39341754 39341754 A G GJA9 Missense_Mutation p.L6P 0.05 deleterious(0) possibly_damaging(0.857) TCGA-GN-A8LN-01 1 40313236 40313236 G A TRIT1 Silent p.N304N 0.42 TCGA-GN-A8LN-01 1 62677238 62677238 C T L1TD1 3'UTR 0.26 TCGA-GN-A8LN-01 1 71437354 71437354 G A PTGER3 Intron 0.51 TCGA-GN-A8LN-01 1 85498445 85498445 C T MCOLN3 Silent p.L222L 0.39 TCGA-GN-A8LN-01 1 86904787 86904787 G A CLCA2 Missense_Mutation p.E401K 0.35 tolerated(0.27) possibly_damaging(0.825) TCGA-GN-A8LN-01 1 9083042 9083042 G A SLC2A7 Silent p.S82S 0.80 TCGA-GN-A8LN-01 20 30414408 30414408 G A MYLK2 Missense_Mutation p.E325K 0.41 deleterious(0.01) possibly_damaging(0.522) TCGA-GN-A8LN-01 20 400061 400061 C T RBCK1 Silent p.V177V 0.31 TCGA-GN-A8LN-01 20 41408877 41408877 C T PTPRT Silent p.R183R 0.27 TCGA-GN-A8LN-01 20 45130084 45130084 G A ZNF334 Nonsense_Mutation p.Q632* 0.20 TCGA-GN-A8LN-01 20 5282919 5282919 C T PROKR2 Missense_Mutation p.E308K 0.54 tolerated(0.12) possibly_damaging(0.544) TCGA-GN-A8LN-01 20 56089746 56089746 C T CTCFL Missense_Mutation p.G411E 0.19 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 20 57036118 57036118 C T APCDD1L Missense_Mutation p.E412K 0.50 deleterious(0) probably_damaging(0.998) TCGA-GN-A8LN-01 21 40250705 40250705 C T AF064858.6 RNA 0.30 TCGA-GN-A8LN-01 21 40555274 40555274 G A PSMG1 Missense_Mutation p.P13L 0.86 tolerated(0.64) possibly_damaging(0.793) TCGA-GN-A8LN-01 21 40604385 40604385 C T BRWD1 Missense_Mutation p.E936K 0.23 deleterious(0.03) benign(0.197) TCGA-GN-A8LN-01 21 40636612 40636612 C G BRWD1 Splice_Site p.X554_splice 0.26 TCGA-GN-A8LN-01 21 41459169 41459169 C T DSCAM Nonsense_Mutation p.W1299* 0.29 TCGA-GN-A8LN-01 22 20819207 20819207 G A KLHL22 Silent p.F350F 0.41 TCGA-GN-A8LN-01 22 26219584 26219584 C T MYO18B Silent p.I878I 0.43 TCGA-GN-A8LN-01 22 29121013 29121013 G A CHEK2 Missense_Mutation p.P225S 0.67 tolerated(0.06) possibly_damaging(0.811) TCGA-GN-A8LN-01 22 40080454 40080454 C T CACNA1I Missense_Mutation p.S1993F 0.38 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-GN-A8LN-01 22 42463810 42463810 G A NAGA Missense_Mutation p.P95S 0.03 tolerated(0.16) benign(0.019) TCGA-GN-A8LN-01 22 46719098 46719098 G A GTSE1 Missense_Mutation p.D482N 0.32 tolerated(0.55) benign(0.241) TCGA-GN-A8LN-01 2 108627063 108627063 C T SLC5A7 Silent p.L497L 0.06 TCGA-GN-A8LN-01 2 118866005 118866005 C T INSIG2 3'UTR 0.31 TCGA-GN-A8LN-01 2 125232354 125232354 G A CNTNAP5 Silent p.G319G 0.47 TCGA-GN-A8LN-01 2 149240891 149240891 C T MBD5 Missense_Mutation p.P911S 0.51 tolerated(0.47) unknown(0) TCGA-GN-A8LN-01 2 163236504 163236504 C T KCNH7 Missense_Mutation p.R997Q 0.59 tolerated(0.62) benign(0) TCGA-GN-A8LN-01 2 167760045 167760045 C T XIRP2 Missense_Mutation p.S18F 0.20 probably_damaging(0.999) TCGA-GN-A8LN-01 2 170151122 170151122 C T LRP2 Missense_Mutation p.E176K 0.35 probably_damaging(0.999) TCGA-GN-A8LN-01 2 173340372 173340372 T C ITGA6 Missense_Mutation p.Y410H 0.33 deleterious(0.03) possibly_damaging(0.563) TCGA-GN-A8LN-01 2 179477782 179477782 C T TTN Missense_Mutation p.G16556R 0.56 TCGA-GN-A8LN-01 2 179523486 179523486 C T TTN Missense_Mutation p.E12497K 0.21 TCGA-GN-A8LN-01 2 179540677 179540677 G A TTN Missense_Mutation p.P11475L 0.47 TCGA-GN-A8LN-01 2 179616413 179616413 C T TTN Intron 0.22 TCGA-GN-A8LN-01 2 207171838 207171838 G A ZDBF2 Silent p.R862R 0.06 TCGA-GN-A8LN-01 2 208994197 208994197 C T CRYGC Missense_Mutation p.D74N 0.28 tolerated(0.06) benign(0.083) TCGA-GN-A8LN-01 2 219295552 219295552 G A VIL1 Silent p.A351A 0.11 TCGA-GN-A8LN-01 2 223559869 223559869 C T MOGAT1 Missense_Mutation p.P239S 0.26 tolerated(0.2) probably_damaging(0.94) TCGA-GN-A8LN-01 2 228883077 228883077 C T SPHKAP Silent p.K831K 0.05 TCGA-GN-A8LN-01 2 239016612 239016612 G A ESPNL Missense_Mutation p.E285K 0.61 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LN-01 2 31010180 31010180 G A CAPN13 Silent p.Y4Y 0.67 TCGA-GN-A8LN-01 2 31489555 31489555 G A EHD3 Silent p.R531R 0.47 TCGA-GN-A8LN-01 2 31489556 31489556 A C EHD3 Missense_Mutation p.K532Q 0.47 tolerated(0.16) benign(0.021) TCGA-GN-A8LN-01 2 7179949 7179949 C T RNF144A 3'UTR 0.29 TCGA-GN-A8LN-01 2 73492767 73492767 C A FBXO41 Missense_Mutation p.A403S 0.39 tolerated(0.34) possibly_damaging(0.52) TCGA-GN-A8LN-01 3 109028070 109028070 G C DPPA2 Missense_Mutation p.R97G 0.45 deleterious(0.01) benign(0.206) TCGA-GN-A8LN-01 3 111659465 111659465 G A PHLDB2 Silent p.K790K 0.54 TCGA-GN-A8LN-01 3 118948823 118948823 G A B4GALT4 Missense_Mutation p.P42S 0.40 tolerated(0.22) benign(0.043) TCGA-GN-A8LN-01 3 121412896 121412896 G A GOLGB1 Silent p.V2158V 0.45 TCGA-GN-A8LN-01 3 121726085 121726085 A T ILDR1 Intron 0.45 TCGA-GN-A8LN-01 3 125879820 125879820 C T ALDH1L1 Missense_Mutation p.M11I 0.07 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-GN-A8LN-01 3 127413894 127413894 G A MGLL Missense_Mutation p.S247F 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-GN-A8LN-01 3 139280040 139280040 G A NMNAT3 Silent p.L154L 0.44 TCGA-GN-A8LN-01 3 149216671 149216671 G A TM4SF4 Silent p.G188G 0.43 TCGA-GN-A8LN-01 3 164906863 164906863 C T SLITRK3 Missense_Mutation p.V586I 0.39 tolerated(0.09) possibly_damaging(0.542) TCGA-GN-A8LN-01 3 169639027 169639027 C T SAMD7 Missense_Mutation p.P38S 0.37 tolerated(0.34) benign(0.071) TCGA-GN-A8LN-01 3 38739346 38739346 C T SCN10A Missense_Mutation p.D1789N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-GN-A8LN-01 3 38798530 38798530 G A SCN10A Silent p.S357S 0.44 TCGA-GN-A8LN-01 3 39433010 39433010 C T SLC25A38 Missense_Mutation p.H119Y 0.03 deleterious(0.03) possibly_damaging(0.53) TCGA-GN-A8LN-01 3 46492134 46492134 C T LTF Missense_Mutation p.E245K 0.43 tolerated(0.45) benign(0.001) TCGA-GN-A8LN-01 3 47451730 47451730 C T PTPN23 Silent p.P814P 0.26 TCGA-GN-A8LN-01 3 49934978 49934978 G A MST1R Missense_Mutation p.S674F 0.44 deleterious(0) probably_damaging(0.981) TCGA-GN-A8LN-01 3 50219746 50219746 G A SEMA3F Missense_Mutation p.D225N 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-GN-A8LN-01 3 50609565 50609565 C T HEMK1 Missense_Mutation p.L114F 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-GN-A8LN-01 3 52475701 52475701 C T SEMA3G Missense_Mutation p.E186K 0.39 deleterious(0) possibly_damaging(0.72) TCGA-GN-A8LN-01 3 52543893 52543893 C T STAB1 Silent p.G785G 0.32 TCGA-GN-A8LN-01 3 56468579 56468579 G A ERC2 Nonsense_Mutation p.Q153* 0.38 TCGA-GN-A8LN-01 3 57233910 57233910 C T HESX1 Missense_Mutation p.E13K 0.38 deleterious(0.01) benign(0.023) TCGA-GN-A8LN-01 3 57283430 57283430 C T APPL1 Silent p.Y302Y 0.41 TCGA-GN-A8LN-01 3 69360479 69360479 G A FRMD4B Silent p.D86D 0.43 TCGA-GN-A8LN-01 3 9055480 9055480 G A SRGAP3 Silent p.L620L 0.29 TCGA-GN-A8LN-01 4 109735041 109735041 G A COL25A1 3'UTR 0.35 TCGA-GN-A8LN-01 4 120240214 120240214 C T FABP2 Silent p.R127R 0.44 TCGA-GN-A8LN-01 4 126408566 126408566 C T FAT4 Missense_Mutation p.P4295S 0.59 benign(0.049) TCGA-GN-A8LN-01 4 146563538 146563538 G T MMAA Nonsense_Mutation p.G155* 0.37 TCGA-GN-A8LN-01 4 166794978 166794978 C T TLL1 5'UTR 0.35 TCGA-GN-A8LN-01 4 174448515 174448515 C T HAND2 Silent p.L189L 0.31 TCGA-GN-A8LN-01 4 175580238 175580238 T C GLRA3 Silent p.E346E 0.42 TCGA-GN-A8LN-01 4 26490859 26490859 G A CCKAR Silent p.F120F 0.39 TCGA-GN-A8LN-01 4 44653599 44653599 C T YIPF7 Missense_Mutation p.E15K 0.42 deleterious_low_confidence(0.02) benign(0.002) TCGA-GN-A8LN-01 4 52883289 52883289 G A LRRC66 Missense_Mutation p.P164L 0.43 deleterious(0) probably_damaging(0.974) TCGA-GN-A8LN-01 4 53313 53313 C T ZNF595 5'UTR 0.14 TCGA-GN-A8LN-01 4 69533878 69533878 C T UGT2B15 Missense_Mutation p.M251I 0.47 deleterious(0.04) benign(0.168) TCGA-GN-A8LN-01 4 71232663 71232663 C T SMR3A Silent p.F119F 0.33 TCGA-GN-A8LN-01 4 8469959 8469959 C A TRMT44 Missense_Mutation p.P605T 0.48 deleterious(0) probably_damaging(0.922) TCGA-GN-A8LN-01 5 118500931 118500931 T C DMXL1 Silent p.F1642F 0.06 TCGA-GN-A8LN-01 5 118965458 118965458 G A FAM170A 5'UTR 0.59 TCGA-GN-A8LN-01 5 129037110 129037110 C T ADAMTS19 Missense_Mutation p.S989L 0.78 deleterious(0.01) benign(0.163) TCGA-GN-A8LN-01 5 138861132 138861132 G A TMEM173 Missense_Mutation p.S53F 0.28 tolerated(0.13) benign(0.202) TCGA-GN-A8LN-01 5 139947418 139947418 C T SLC35A4 Missense_Mutation p.L222F 0.09 tolerated(0.18) benign(0.004) TCGA-GN-A8LN-01 5 140182649 140182649 C T PCDHA3 Missense_Mutation p.R623C 0.58 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-GN-A8LN-01 5 140236304 140236304 C T PCDHA10 Missense_Mutation p.S224F 0.35 deleterious_low_confidence(0) benign(0.043) TCGA-GN-A8LN-01 5 140559298 140559298 C T PCDHB8 Silent p.F561F 0.35 TCGA-GN-A8LN-01 5 140603357 140603357 G A PCDHB14 Missense_Mutation p.E94K 0.04 tolerated_low_confidence(0.14) possibly_damaging(0.46) TCGA-GN-A8LN-01 5 140615858 140615858 C T PCDHB18 RNA 0.29 TCGA-GN-A8LN-01 5 140784520 140784520 C T PCDHGA9 Silent p.S667S 0.11 TCGA-GN-A8LN-01 5 141694659 141694659 G A SPRY4 Silent p.I28I 0.26 TCGA-GN-A8LN-01 5 149357285 149357285 C T SLC26A2 Missense_Mutation p.P24S 0.81 tolerated_low_confidence(0.39) benign(0.005) TCGA-GN-A8LN-01 5 151638 151638 C G PLEKHG4B Missense_Mutation p.S283C 0.32 deleterious(0.04) benign(0.004) TCGA-GN-A8LN-01 5 151784168 151784168 G A NMUR2 Silent p.I169I 0.90 TCGA-GN-A8LN-01 5 154173713 154173713 C T LARP1 Missense_Mutation p.R298C 0.81 tolerated(0.17) probably_damaging(0.939) TCGA-GN-A8LN-01 5 15936592 15936592 G T FBXL7 Missense_Mutation p.R258L 0.06 tolerated(0.31) benign(0.103) TCGA-GN-A8LN-01 5 171821573 171821573 G A SH3PXD2B Silent p.Y101Y 0.44 TCGA-GN-A8LN-01 5 180043969 180043969 C T FLT4 Silent p.L1009L 0.15 TCGA-GN-A8LN-01 5 19473318 19473318 T C CDH18 3'UTR 0.80 TCGA-GN-A8LN-01 5 38886464 38886464 C T OSMR Intron 0.27 TCGA-GN-A8LN-01 5 39285163 39285163 G C C9 3'UTR 0.67 TCGA-GN-A8LN-01 5 39285177 39285177 G C C9 3'UTR 0.63 TCGA-GN-A8LN-01 5 63256279 63256279 C T HTR1A Silent p.%3D 0.15 TCGA-GN-A8LN-01 5 78347147 78347147 C T DMGDH Silent p.Q236Q 0.27 TCGA-GN-A8LN-01 5 79031445 79031445 G T CMYA5 Missense_Mutation p.R2286M 0.06 benign(0.133) TCGA-GN-A8LN-01 5 79855534 79855534 G A ANKRD34B Missense_Mutation p.S102F 0.32 deleterious(0.02) probably_damaging(0.984) TCGA-GN-A8LN-01 5 89938853 89938853 C T GPR98 Missense_Mutation p.P850S 0.51 possibly_damaging(0.857) TCGA-GN-A8LN-01 6 108214736 108214736 G A SEC63 Missense_Mutation p.P542S 0.42 tolerated(0.62) benign(0.001) TCGA-GN-A8LN-01 6 112386122 112386122 G A WISP3 Missense_Mutation p.G189R 0.07 tolerated(0.45) benign(0.015) TCGA-GN-A8LN-01 6 121544410 121544410 G A TBC1D32 Missense_Mutation p.S818F 0.77 deleterious(0) probably_damaging(0.999) TCGA-GN-A8LN-01 6 122753202 122753202 T G HSF2 Missense_Mutation p.V483G 0.09 tolerated(0.41) benign(0.004) TCGA-GN-A8LN-01 6 134495967 134495967 A C SGK1 Intron 0.76 TCGA-GN-A8LN-01 6 151766907 151766907 G A RMND1 Missense_Mutation p.H14Y 0.77 tolerated_low_confidence(1) benign(0.001) TCGA-GN-A8LN-01 6 25726566 25726566 G A HIST1H2AA Missense_Mutation p.L64F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.457) TCGA-GN-A8LN-01 6 25813407 25813407 G A SLC17A1 Silent p.F217F 0.43 TCGA-GN-A8LN-01 6 26123857 26123857 G A HIST1H2BC Silent p.S92S 0.37 TCGA-GN-A8LN-01 6 26501898 26501898 C T BTN1A1 Missense_Mutation p.P54S 0.41 deleterious(0.02) benign(0.172) TCGA-GN-A8LN-01 6 26501899 26501899 C T BTN1A1 Missense_Mutation p.P54L 0.41 deleterious(0) possibly_damaging(0.855) TCGA-GN-A8LN-01 6 30128369 30128369 G A TRIM10 Silent p.S89S 0.41 TCGA-GN-A8LN-01 6 32065671 32065671 G A TNXB Missense_Mutation p.A102V 0.57 probably_damaging(0.971) TCGA-GN-A8LN-01 6 34499565 34499565 G A PACSIN1 Splice_Site p.X409_splice 0.33 TCGA-GN-A8LN-01 6 38793939 38793939 G A DNAH8 Missense_Mutation p.M1068I 0.36 benign(0.002) TCGA-GN-A8LN-01 6 4135828 4135828 G A ECI2 5'UTR 0.48 TCGA-GN-A8LN-01 6 46626652 46626652 A G SLC25A27 Intron 0.45 TCGA-GN-A8LN-01 6 54735239 54735239 G A FAM83B Silent p.L65L 0.41 TCGA-GN-A8LN-01 6 57075194 57075194 G A RAB23 5'UTR 0.39 TCGA-GN-A8LN-01 6 79668289 79668289 G A PHIP Nonsense_Mutation p.R1229* 0.43 TCGA-GN-A8LN-01 6 96651059 96651059 C T FUT9 Missense_Mutation p.R10C 0.43 deleterious(0) probably_damaging(0.995) TCGA-GN-A8LN-01 6 97512513 97512513 G A KLHL32 Missense_Mutation p.E108K 0.50 tolerated(0.54) probably_damaging(0.998) TCGA-GN-A8LN-01 7 100490058 100490058 A G ACHE Missense_Mutation p.F484L 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-GN-A8LN-01 7 100680237 100680237 C T MUC17 Missense_Mutation p.S1847L 0.40 benign(0.307) TCGA-GN-A8LN-01 7 102614117 102614117 C T FBXL13 Intron 0.25 TCGA-GN-A8LN-01 7 102614118 102614118 C T FBXL13 Intron 0.26 TCGA-GN-A8LN-01 7 104753045 104753045 C T KMT2E Silent p.N1614N 0.30 TCGA-GN-A8LN-01 7 107748165 107748165 G A LAMB4 Missense_Mutation p.P168S 0.47 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 7 114282582 114282582 C T FOXP2 Missense_Mutation p.S323L 0.48 deleterious(0.03) unknown(0) TCGA-GN-A8LN-01 7 117230480 117230480 G A CFTR Missense_Mutation p.E585K 0.39 deleterious(0.02) benign(0) TCGA-GN-A8LN-01 7 123092855 123092855 C T IQUB Nonsense_Mutation p.W773* 0.47 TCGA-GN-A8LN-01 7 12683925 12683925 G A SCIN Missense_Mutation p.E582K 0.45 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 7 129662338 129662338 G A ZC3HC1 Missense_Mutation p.P421S 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A8LN-01 7 132192481 132192481 C T PLXNA4 Silent p.R324R 0.34 TCGA-GN-A8LN-01 7 139756658 139756658 G A PARP12 Missense_Mutation p.S253F 0.42 deleterious(0.04) benign(0.068) TCGA-GN-A8LN-01 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.42 TCGA-GN-A8LN-01 7 143747706 143747706 C T OR2A5 Missense_Mutation p.S71L 0.46 deleterious(0.03) benign(0.003) TCGA-GN-A8LN-01 7 150648084 150648084 G A KCNH2 Silent p.P690P 0.47 TCGA-GN-A8LN-01 7 156754921 156754921 C T NOM1 Missense_Mutation p.P570L 0.43 deleterious(0.01) possibly_damaging(0.766) TCGA-GN-A8LN-01 7 24663358 24663358 C T MPP6 Silent p.F24F 0.42 TCGA-GN-A8LN-01 7 4009012 4009012 A G SDK1 Missense_Mutation p.N557S 0.41 deleterious(0.01) probably_damaging(0.951) TCGA-GN-A8LN-01 7 43351601 43351601 C T HECW1 Silent p.S89S 0.49 TCGA-GN-A8LN-01 7 55221771 55221771 C T EGFR Missense_Mutation p.P272L 0.27 deleterious(0) probably_damaging(0.989) TCGA-GN-A8LN-01 7 55224453 55224453 G A EGFR Missense_Mutation p.D379N 0.45 deleterious(0.04) probably_damaging(0.912) TCGA-GN-A8LN-01 7 56123350 56123350 G A CCT6A Missense_Mutation p.E124K 0.08 deleterious(0.02) benign(0.123) TCGA-GN-A8LN-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.40 deleterious(0) possibly_damaging(0.869) TCGA-GN-A8LN-01 7 70885895 70885895 G A WBSCR17 Missense_Mutation p.A256T 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-GN-A8LN-01 7 82584752 82584752 T C PCLO Silent p.T1839T 0.03 TCGA-GN-A8LN-01 7 87445574 87445574 G A RUNDC3B Missense_Mutation p.E425K 0.41 tolerated(0.88) benign(0.001) TCGA-GN-A8LN-01 8 100128062 100128062 C T VPS13B Silent p.D299D 0.38 TCGA-GN-A8LN-01 8 133023128 133023128 C T EFR3A Silent p.L818L 0.35 TCGA-GN-A8LN-01 8 145699743 145699743 C T FOXH1 Missense_Mutation p.D326N 0.57 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LN-01 8 1649593 1649593 C T DLGAP2 3'UTR 0.68 TCGA-GN-A8LN-01 8 1649594 1649594 C T DLGAP2 3'UTR 0.68 TCGA-GN-A8LN-01 8 18258039 18258039 C T NAT2 Missense_Mutation p.L176F 0.48 tolerated(0.18) benign(0.323) TCGA-GN-A8LN-01 8 2048677 2048677 G A MYOM2 Missense_Mutation p.D818N 0.37 deleterious(0.02) probably_damaging(0.928) TCGA-GN-A8LN-01 8 2091327 2091327 C T MYOM2 Missense_Mutation p.R1343C 0.39 deleterious(0.01) probably_damaging(1) TCGA-GN-A8LN-01 8 23167425 23167425 C T LOXL2 Splice_Site p.X546_splice 0.33 TCGA-GN-A8LN-01 8 23538822 23538822 G A NKX3-1 Missense_Mutation p.S206F 0.44 deleterious(0.01) possibly_damaging(0.885) TCGA-GN-A8LN-01 8 24349565 24349565 G A ADAM7 Silent p.G502G 0.51 TCGA-GN-A8LN-01 8 3216769 3216769 G A CSMD1 Missense_Mutation p.S1070F 0.50 possibly_damaging(0.741) TCGA-GN-A8LN-01 8 35406992 35406992 G A UNC5D Missense_Mutation p.E96K 0.44 deleterious(0.02) possibly_damaging(0.492) TCGA-GN-A8LN-01 8 41812837 41812837 G A KAT6A Silent p.S525S 0.30 TCGA-GN-A8LN-01 8 52232527 52232527 G A PXDNL Missense_Mutation p.P1439L 0.46 tolerated(0.08) benign(0.12) TCGA-GN-A8LN-01 8 55538343 55538343 C T RP1 Missense_Mutation p.A634V 0.41 tolerated(0.1) benign(0.004) TCGA-GN-A8LN-01 8 70967622 70967622 C T PRDM14 Silent p.G467G 0.45 TCGA-GN-A8LN-01 8 71041035 71041035 G A NCOA2 Missense_Mutation p.R1169C 0.46 tolerated(0.11) probably_damaging(1) TCGA-GN-A8LN-01 8 86240766 86240766 G A CA1 3'UTR 0.41 TCGA-GN-A8LN-01 9 104356697 104356697 G A PPP3R2 Silent p.I172I 0.81 TCGA-GN-A8LN-01 9 107299025 107299025 C T OR13C3 Missense_Mutation p.D24N 0.94 tolerated_low_confidence(0.12) benign(0.077) TCGA-GN-A8LN-01 9 116835239 116835239 G A AMBP Silent p.I174I 0.64 TCGA-GN-A8LN-01 9 125551345 125551345 G A OR5C1 Missense_Mutation p.G45E 0.86 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A8LN-01 9 135447909 135447909 C T C9orf171 3'UTR 1.00 TCGA-GN-A8LN-01 9 139264304 139264304 G A CARD9 Silent p.F325F 0.67 TCGA-GN-A8LN-01 9 14746466 14746466 C T FREM1 Missense_Mutation p.D2047N 0.88 tolerated(0.19) benign(0.093) TCGA-GN-A8LN-01 9 37537874 37537874 G A FBXO10 Missense_Mutation p.P218S 0.84 deleterious(0) probably_damaging(0.997) TCGA-GN-A8LN-01 X 100611067 100611067 C T BTK Silent p.E513E 0.88 TCGA-GN-A8LN-01 X 107829879 107829879 G A COL4A5 Missense_Mutation p.G356E 0.85 unknown(0) TCGA-GN-A8LN-01 X 114524333 114524333 C T LUZP4 Missense_Mutation p.S3L 0.86 deleterious(0.01) possibly_damaging(0.776) TCGA-GN-A8LN-01 X 117527136 117527136 C T WDR44 Missense_Mutation p.P243L 0.92 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-GN-A8LN-01 X 123839094 123839094 G T TENM1 Missense_Mutation p.L262M 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GN-A8LN-01 X 12904184 12904184 G A TLR7 Missense_Mutation p.R186Q 0.91 tolerated(0.15) probably_damaging(0.987) TCGA-GN-A8LN-01 X 1761731 1761731 G A ASMT Missense_Mutation p.E316K 0.78 deleterious(0.05) benign(0.379) TCGA-GN-A8LN-01 X 36091332 36091332 G A CHDC2 Silent p.K89K 0.79 TCGA-GN-A8LN-01 X 36091333 36091333 G T CHDC2 Nonsense_Mutation p.E90* 0.81 TCGA-GN-A8LN-01 X 47426731 47426731 C T ARAF Nonsense_Mutation p.R326* 0.96 TCGA-GN-A8LN-01 X 53279983 53279983 G A IQSEC2 Missense_Mutation p.P592L 0.91 deleterious_low_confidence(0) probably_damaging(1) TCGA-GN-A8LN-01 X 73960341 73960341 G A KIAA2022 Missense_Mutation p.P1351S 0.97 tolerated(0.24) benign(0.036) TCGA-GN-A8LN-01 X 73962250 73962250 C T KIAA2022 Silent p.R714R 0.89 TCGA-GN-A8LN-01 X 91642907 91642907 G A PCDH11X Silent p.G1106G 0.93 TCGA-GN-A8LN-01 Y 16952893 16952893 G A NLGN4Y Missense_Mutation p.M734I 0.64 tolerated_low_confidence(0.26) possibly_damaging(0.577) TCGA-GN-A9SD-06 10 103871217 103871217 G T LDB1 Silent p.P34P 0.21 TCGA-GN-A9SD-06 10 126490351 126490351 G A FAM175B 5'Flank 0.26 TCGA-GN-A9SD-06 10 22705546 22705546 A G SPAG6 Splice_Site p.X487_splice 0.25 TCGA-GN-A9SD-06 10 25197504 25197504 C T PRTFDC1 Intron 0.20 TCGA-GN-A9SD-06 10 25701183 25701183 G A GPR158 Silent p.R372R 0.34 TCGA-GN-A9SD-06 10 52595904 52595904 G A A1CF Silent p.N186N 0.25 TCGA-GN-A9SD-06 11 101342098 101342098 C T TRPC6 Nonsense_Mutation p.W742* 0.07 TCGA-GN-A9SD-06 11 134121125 134121125 G A THYN1 Nonsense_Mutation p.Q41* 0.21 TCGA-GN-A9SD-06 11 1475808 1475808 C T BRSK2 Silent p.I592I 0.14 TCGA-GN-A9SD-06 11 55579789 55579789 C T OR5L1 Missense_Mutation p.P283S 0.32 deleterious(0.01) probably_damaging(1) TCGA-GN-A9SD-06 11 58190486 58190486 G A OR5B2 Silent p.F83F 0.19 TCGA-GN-A9SD-06 11 68154088 68154088 C T LRP5 Silent p.I440I 0.43 TCGA-GN-A9SD-06 11 71507102 71507102 G A FAM86C1 Missense_Mutation p.G101R 0.11 deleterious(0) probably_damaging(0.929) TCGA-GN-A9SD-06 12 120567082 120567082 G A GCN1L1 Nonsense_Mutation p.Q2630* 0.22 TCGA-GN-A9SD-06 12 18890357 18890357 T G PLCZ1 5'UTR 0.25 TCGA-GN-A9SD-06 12 33529760 33529760 A T SYT10 3'UTR 0.21 TCGA-GN-A9SD-06 12 54576402 54576402 G A SMUG1 Silent p.P97P 0.24 TCGA-GN-A9SD-06 12 55641548 55641548 G A OR6C74 Silent p.L159L 0.07 TCGA-GN-A9SD-06 12 6422868 6422868 C T PLEKHG6 Missense_Mutation p.P71L 0.18 deleterious(0) benign(0.33) TCGA-GN-A9SD-06 13 34400018 34400018 T G RFC3 Missense_Mutation p.F129C 0.17 deleterious(0) probably_damaging(0.998) TCGA-GN-A9SD-06 13 36049694 36049694 C A MAB21L1 Missense_Mutation p.W194C 0.10 deleterious(0) probably_damaging(1) TCGA-GN-A9SD-06 13 49710580 49710580 G A FNDC3A Missense_Mutation p.M201I 0.10 tolerated(0.14) benign(0) TCGA-GN-A9SD-06 13 61985532 61985532 G A PCDH20 Silent p.S900S 0.20 TCGA-GN-A9SD-06 13 70681622 70681622 C T KLHL1 Silent p.K70K 0.20 TCGA-GN-A9SD-06 13 77632382 77632382 C T MYCBP2 Missense_Mutation p.E4396K 0.12 benign(0.205) TCGA-GN-A9SD-06 13 99519729 99519729 G A DOCK9 Missense_Mutation p.P1079L 0.18 deleterious(0) probably_damaging(1) TCGA-GN-A9SD-06 14 101512302 101512302 G A MIR381 RNA 0.11 TCGA-GN-A9SD-06 14 101513657 101513657 C T MIR381HG Intron 0.18 TCGA-GN-A9SD-06 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.15 tolerated(0.06) benign(0.055) TCGA-GN-A9SD-06 14 20585605 20585605 G A OR4K17 Missense_Mutation p.D14N 0.22 tolerated_low_confidence(0.33) benign(0) TCGA-GN-A9SD-06 14 44975038 44975038 G A FSCB Missense_Mutation p.R385W 0.18 tolerated(0.1) benign(0) TCGA-GN-A9SD-06 14 56079226 56079226 C T KTN1 Missense_Mutation p.P154S 0.15 deleterious(0) possibly_damaging(0.746) TCGA-GN-A9SD-06 14 88737112 88737112 C T KCNK10 Intron 0.12 TCGA-GN-A9SD-06 15 24922007 24922007 G A NPAP1 Silent p.S331S 0.10 TCGA-GN-A9SD-06 15 42042649 42042650 - A MGA Frame_Shift_Ins p.P2283Tfs*13 0.20 TCGA-GN-A9SD-06 15 45392988 45392988 C A DUOX2 Silent p.L990L 0.14 TCGA-GN-A9SD-06 15 45397873 45397873 G A DUOX2 Silent p.L768L 0.17 TCGA-GN-A9SD-06 15 45397874 45397874 G A DUOX2 Silent p.I767I 0.17 TCGA-GN-A9SD-06 15 45433184 45433184 G A DUOX1 Missense_Mutation p.G494E 0.24 deleterious(0) probably_damaging(0.996) TCGA-GN-A9SD-06 15 48707847 48707847 C A FBN1 Missense_Mutation p.C2646F 0.20 probably_damaging(0.999) TCGA-GN-A9SD-06 15 74948195 74948195 G A EDC3 Silent p.S233S 0.14 TCGA-GN-A9SD-06 16 1453327 1453327 C T UNKL Silent p.R102R 0.32 TCGA-GN-A9SD-06 16 15835697 15835697 C T MYH11 Missense_Mutation p.E865K 0.19 benign(0.05) TCGA-GN-A9SD-06 16 15835698 15835698 C T MYH11 Silent p.K864K 0.19 TCGA-GN-A9SD-06 16 20557744 20557744 C T ACSM2B Missense_Mutation p.G384E 0.19 deleterious(0) probably_damaging(0.998) TCGA-GN-A9SD-06 16 30518177 30518177 G A ITGAL Silent p.K836K 0.23 TCGA-GN-A9SD-06 16 57147350 57147350 C T CPNE2 Silent p.L111L 0.18 TCGA-GN-A9SD-06 16 67038040 67038040 T - CES4A Frame_Shift_Del p.L332Wfs*4 0.19 TCGA-GN-A9SD-06 16 70432330 70432330 G A ST3GAL2 Missense_Mutation p.P35L 0.12 benign(0.022) TCGA-GN-A9SD-06 16 841246 841246 C T CHTF18 Missense_Mutation p.P327L 0.50 deleterious(0.02) benign(0.238) TCGA-GN-A9SD-06 17 10427785 10427785 G A MYH2 Nonsense_Mutation p.Q1725* 0.20 TCGA-GN-A9SD-06 17 18541637 18541637 C T TBC1D28 Missense_Mutation p.G126S 0.06 tolerated(0.1) possibly_damaging(0.514) TCGA-GN-A9SD-06 17 18675834 18675834 G A FBXW10 Missense_Mutation p.E706K 0.22 tolerated(0.27) benign(0.08) TCGA-GN-A9SD-06 17 42429834 42429834 C T GRN Silent p.H513H 0.10 TCGA-GN-A9SD-06 17 56438306 56438306 C A RNF43 Splice_Site p.X230_splice 0.17 TCGA-GN-A9SD-06 17 57348321 57348321 C T GDPD1 Silent p.S245S 0.20 TCGA-GN-A9SD-06 17 67286148 67286148 G A ABCA5 Missense_Mutation p.S546L 0.18 deleterious(0) possibly_damaging(0.733) TCGA-GN-A9SD-06 17 80391586 80391586 C T HEXDC Missense_Mutation p.P112L 0.13 deleterious(0.03) benign(0.407) TCGA-GN-A9SD-06 17 80391587 80391587 C T HEXDC Silent p.P112P 0.13 TCGA-GN-A9SD-06 18 28574328 28574328 C T DSC3 Missense_Mutation p.R835Q 0.13 tolerated(0.06) benign(0.002) TCGA-GN-A9SD-06 18 28966682 28966682 C A DSG4 Missense_Mutation p.T39K 0.12 deleterious(0.01) possibly_damaging(0.56) TCGA-GN-A9SD-06 18 29340285 29340285 G A SLC25A52 Missense_Mutation p.R124C 0.14 tolerated(0.07) benign(0.371) TCGA-GN-A9SD-06 19 12184967 12184967 C T ZNF844 Missense_Mutation p.S42F 0.29 deleterious(0.03) probably_damaging(0.951) TCGA-GN-A9SD-06 19 14073963 14073963 C T RFX1 Missense_Mutation p.G899S 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-GN-A9SD-06 19 14884820 14884820 G A EMR2 Silent p.T43T 0.09 TCGA-GN-A9SD-06 19 16908540 16908540 C T NWD1 Intron 0.11 TCGA-GN-A9SD-06 19 18652540 18652540 C T FKBP8 Missense_Mutation p.E81K 0.16 tolerated(0.19) benign(0.04) TCGA-GN-A9SD-06 19 22847795 22847795 A G ZNF492 Missense_Mutation p.I442V 0.23 deleterious(0.04) benign(0.394) TCGA-GN-A9SD-06 19 23329458 23329458 G A ZNF730 3'UTR 0.07 TCGA-GN-A9SD-06 19 23329459 23329459 G A ZNF730 3'UTR 0.07 TCGA-GN-A9SD-06 19 2418060 2418060 G A TMPRSS9 Missense_Mutation p.S659N 0.25 tolerated(0.29) benign(0.019) TCGA-GN-A9SD-06 19 2993522 2993522 G A TLE6 Silent p.Q493Q 0.21 TCGA-GN-A9SD-06 19 37368528 37368528 G A ZNF345 Missense_Mutation p.A266T 0.19 tolerated(0.3) benign(0.223) TCGA-GN-A9SD-06 19 37368588 37368588 T C ZNF345 Missense_Mutation p.Y286H 0.21 deleterious(0.02) possibly_damaging(0.888) TCGA-GN-A9SD-06 19 43349400 43349400 C G PSG10P RNA 0.21 TCGA-GN-A9SD-06 19 43763210 43763210 C T PSG9 Missense_Mutation p.E263K 0.12 tolerated(0.08) possibly_damaging(0.905) TCGA-GN-A9SD-06 19 44771095 44771095 C T ZNF233 Silent p.I73I 0.09 TCGA-GN-A9SD-06 19 47572459 47572459 G A ZC3H4 Missense_Mutation p.P763L 0.19 unknown(0) TCGA-GN-A9SD-06 19 47572460 47572460 G A ZC3H4 Missense_Mutation p.P763S 0.19 unknown(0) TCGA-GN-A9SD-06 19 54177487 54177487 C T MIR498 RNA 0.30 TCGA-GN-A9SD-06 19 7083495 7083495 G A ZNF557 Missense_Mutation p.E345K 0.12 deleterious(0) possibly_damaging(0.614) TCGA-GN-A9SD-06 19 8841652 8841652 G A OR2Z1 Missense_Mutation p.G88R 0.09 deleterious(0.02) benign(0.033) TCGA-GN-A9SD-06 19 9059450 9059450 G A MUC16 Silent p.S9332S 0.22 TCGA-GN-A9SD-06 19 9061893 9061893 G A MUC16 Missense_Mutation p.T8518I 0.13 unknown(0) TCGA-GN-A9SD-06 1 103355088 103355088 G A COL11A1 Missense_Mutation p.P1463S 0.14 unknown(0) TCGA-GN-A9SD-06 1 103431051 103431051 C A COL11A1 Nonsense_Mutation p.G970* 0.17 TCGA-GN-A9SD-06 1 145414736 145414736 C T HFE2 5'UTR 0.41 TCGA-GN-A9SD-06 1 152276039 152276039 C T FLG Missense_Mutation p.E3775K 0.14 unknown(0) TCGA-GN-A9SD-06 1 156905982 156905982 C T ARHGEF11 Intron 0.07 TCGA-GN-A9SD-06 1 157504576 157504576 G A FCRL5 Silent p.I503I 0.46 TCGA-GN-A9SD-06 1 173542456 173542456 C T SLC9C2 Missense_Mutation p.R304K 0.12 tolerated(0.99) benign(0.004) TCGA-GN-A9SD-06 1 179437710 179437710 C T AXDND1 Missense_Mutation p.S644L 0.41 tolerated(0.7) benign(0) TCGA-GN-A9SD-06 1 182026978 182026978 C T ZNF648 Silent p.R56R 0.30 TCGA-GN-A9SD-06 1 183481974 183481974 A T SMG7 Missense_Mutation p.Q11L 0.38 deleterious(0.02) possibly_damaging(0.908) TCGA-GN-A9SD-06 1 186332548 186332548 T C TPR Missense_Mutation p.K153E 0.42 benign(0.292) TCGA-GN-A9SD-06 1 190195437 190195437 G T BRINP3 Missense_Mutation p.L246I 0.06 tolerated(1) benign(0.002) TCGA-GN-A9SD-06 1 1956957 1956957 G T GABRD Nonsense_Mutation p.E84* 0.10 TCGA-GN-A9SD-06 1 20005432 20005432 C T HTR6 Silent p.S298S 0.14 TCGA-GN-A9SD-06 1 20005433 20005433 C G HTR6 Missense_Mutation p.P299A 0.14 tolerated(0.71) benign(0.004) TCGA-GN-A9SD-06 1 205739540 205739540 A C RAB7L1 Missense_Mutation p.I181S 0.19 tolerated(0.78) benign(0) TCGA-GN-A9SD-06 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.11 TCGA-GN-A9SD-06 1 2411336 2411336 C T PLCH2 Silent p.T118T 0.16 TCGA-GN-A9SD-06 1 244869039 244869039 C T DESI2 Missense_Mutation p.S178F 0.40 deleterious(0.02) benign(0.07) TCGA-GN-A9SD-06 1 244869040 244869040 C T DESI2 Silent p.S178S 0.41 TCGA-GN-A9SD-06 1 245849968 245849968 C T KIF26B Missense_Mutation p.P1228L 0.19 deleterious(0) unknown(0) TCGA-GN-A9SD-06 1 66458757 66458757 C G PDE4B Intron 0.25 TCGA-GN-A9SD-06 1 75684234 75684234 C T SLC44A5 Missense_Mutation p.M490I 0.20 deleterious(0.02) benign(0.063) TCGA-GN-A9SD-06 20 31607502 31607502 G A BPIFB2 Silent p.E342E 0.21 TCGA-GN-A9SD-06 20 31607503 31607503 G A BPIFB2 Missense_Mutation p.V343I 0.21 deleterious(0.04) probably_damaging(0.993) TCGA-GN-A9SD-06 21 17138334 17138334 G A USP25 Missense_Mutation p.E48K 0.34 tolerated(0.63) unknown(0) TCGA-GN-A9SD-06 21 17912208 17912208 C A MIRLET7C RNA 0.08 TCGA-GN-A9SD-06 21 41033492 41033492 G A B3GALT5 3'UTR 0.40 TCGA-GN-A9SD-06 21 42866336 42866336 T C TMPRSS2 Missense_Mutation p.N99S 0.21 tolerated(0.14) benign(0.006) TCGA-GN-A9SD-06 22 22892581 22892581 G A PRAME Missense_Mutation p.P174S 0.34 deleterious(0.02) possibly_damaging(0.779) TCGA-GN-A9SD-06 2 109002651 109002651 C T SULT1C4 Missense_Mutation p.P207S 0.20 deleterious(0.02) possibly_damaging(0.688) TCGA-GN-A9SD-06 2 128477273 128477273 G A WDR33 Silent p.L776L 0.29 TCGA-GN-A9SD-06 2 179438659 179438659 C T TTN Missense_Mutation p.G24067E 0.32 TCGA-GN-A9SD-06 2 183943800 183943800 G A DUSP19 Missense_Mutation p.E47K 0.10 tolerated(0.16) benign(0.01) TCGA-GN-A9SD-06 2 212295747 212295747 G A ERBB4 Missense_Mutation p.H856Y 0.25 deleterious(0.03) benign(0.079) TCGA-GN-A9SD-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.08 deleterious(0) probably_damaging(0.954) TCGA-GN-A9SD-06 2 219735960 219735960 C T WNT6 Silent p.L98L 0.11 TCGA-GN-A9SD-06 2 226446914 226446914 G A NYAP2 Missense_Mutation p.D261N 0.14 deleterious(0.02) benign(0.127) TCGA-GN-A9SD-06 2 234581249 234581249 T A UGT1A9 Missense_Mutation p.F223L 0.16 tolerated(0.9) benign(0.015) TCGA-GN-A9SD-06 2 239140892 239140892 G A AC016757.3 5'Flank 0.16 TCGA-GN-A9SD-06 2 24974900 24974900 G A NCOA1 Silent p.G1252G 0.15 TCGA-GN-A9SD-06 2 89442138 89442138 C T IGKV3-20 Silent p.G89G 0.22 TCGA-GN-A9SD-06 3 121345661 121345661 G A FBXO40 Silent p.P678P 0.27 TCGA-GN-A9SD-06 3 124132370 124132370 C T KALRN Silent p.D798D 0.24 TCGA-GN-A9SD-06 3 167745560 167745560 G A GOLIM4 Missense_Mutation p.R527C 0.07 deleterious(0.01) possibly_damaging(0.663) TCGA-GN-A9SD-06 3 182577007 182577007 C T ATP11B Missense_Mutation p.P354S 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-GN-A9SD-06 3 184023900 184023900 C T PSMD2 Silent p.F587F 0.11 TCGA-GN-A9SD-06 3 40223762 40223762 C T MYRIP Missense_Mutation p.P309S 0.14 tolerated(1) benign(0.002) TCGA-GN-A9SD-06 3 40223763 40223763 C T MYRIP Missense_Mutation p.P309L 0.14 tolerated(0.18) benign(0.004) TCGA-GN-A9SD-06 3 47632306 47632306 G A SMARCC1 Missense_Mutation p.S1022F 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-GN-A9SD-06 3 56044494 56044494 C T ERC2 Missense_Mutation p.E635K 0.06 tolerated(0.18) possibly_damaging(0.464) TCGA-GN-A9SD-06 3 73438970 73438970 G A PDZRN3 Silent p.I471I 0.24 TCGA-GN-A9SD-06 3 97868502 97868502 G A OR5H14 Missense_Mutation p.M91I 0.23 tolerated(0.22) benign(0.001) TCGA-GN-A9SD-06 3 98216797 98216797 G A OR5K2 Silent p.R91R 0.13 TCGA-GN-A9SD-06 4 110687755 110687755 G A CFI Missense_Mutation p.H95Y 0.08 tolerated(0.21) benign(0.001) TCGA-GN-A9SD-06 4 123374885 123374885 C A IL2 Missense_Mutation p.V111L 0.08 tolerated(0.12) possibly_damaging(0.484) TCGA-GN-A9SD-06 4 126373924 126373924 T C FAT4 Missense_Mutation p.F3918S 0.13 possibly_damaging(0.785) TCGA-GN-A9SD-06 4 148575667 148575667 C T PRMT10 Missense_Mutation p.D461N 0.21 tolerated(0.17) probably_damaging(0.928) TCGA-GN-A9SD-06 4 15538544 15538544 G A CC2D2A Missense_Mutation p.E537K 0.19 tolerated(0.07) possibly_damaging(0.749) TCGA-GN-A9SD-06 4 155531238 155531238 G A FGG Silent p.I171I 0.19 TCGA-GN-A9SD-06 4 2238071 2238071 G A HAUS3 Nonsense_Mutation p.Q488* 0.11 TCGA-GN-A9SD-06 4 25347222 25347222 C T ZCCHC4 Missense_Mutation p.H247Y 0.27 deleterious(0) benign(0.049) TCGA-GN-A9SD-06 4 49019304 49019304 G C CWH43 Missense_Mutation p.G409R 0.21 tolerated(0.06) probably_damaging(0.921) TCGA-GN-A9SD-06 4 56446998 56446998 C T PDCL2 Missense_Mutation p.E70K 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A9SD-06 4 57777266 57777266 G A REST Silent p.S154S 0.13 TCGA-GN-A9SD-06 4 62598785 62598785 G A LPHN3 Silent p.R236R 0.17 TCGA-GN-A9SD-06 4 65274985 65274985 C T TECRL Missense_Mutation p.D29N 0.25 tolerated_low_confidence(0.16) benign(0.006) TCGA-GN-A9SD-06 4 84337944 84337944 G A HELQ Silent p.L1046L 0.16 TCGA-GN-A9SD-06 5 121786503 121786503 A T SNCAIP Missense_Mutation p.K654M 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-GN-A9SD-06 5 140208482 140208482 G T PCDHA6 Missense_Mutation p.R269L 0.24 tolerated_low_confidence(1) benign(0.003) TCGA-GN-A9SD-06 5 140516327 140516327 G A PCDHB5 Silent p.T437T 0.20 TCGA-GN-A9SD-06 5 140745511 140745511 G A PCDHGA5 Silent p.G538G 0.20 TCGA-GN-A9SD-06 5 63802538 63802538 G A RGS7BP Silent p.Q29Q 0.16 TCGA-GN-A9SD-06 5 64492910 64492910 C T ADAMTS6 Missense_Mutation p.D882N 0.19 tolerated(0.14) benign(0.007) TCGA-GN-A9SD-06 5 65058808 65058808 T A NLN Missense_Mutation p.F108Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-GN-A9SD-06 5 72875761 72875761 C T UTP15 Nonsense_Mutation p.Q467* 0.14 TCGA-GN-A9SD-06 6 102372576 102372576 G T GRIK2 Nonsense_Mutation p.G617* 0.09 TCGA-GN-A9SD-06 6 121613284 121613284 G A TBC1D32 Silent p.F429F 0.10 TCGA-GN-A9SD-06 6 129634114 129634114 C T LAMA2 Nonsense_Mutation p.R1095* 0.28 TCGA-GN-A9SD-06 6 151673398 151673398 G T AKAP12 Missense_Mutation p.G1291V 0.22 deleterious(0.02) benign(0.184) TCGA-GN-A9SD-06 6 54034356 54034356 C T MLIP Nonsense_Mutation p.R309* 0.17 TCGA-GN-A9SD-06 6 55939073 55939073 C T COL21A1 Missense_Mutation p.G641E 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-GN-A9SD-06 6 56505308 56505308 A T DST Missense_Mutation p.L171H 0.19 probably_damaging(0.978) TCGA-GN-A9SD-06 6 70980037 70980037 G A COL9A1 Missense_Mutation p.P393S 0.15 probably_damaging(1) TCGA-GN-A9SD-06 6 93956553 93956553 G A EPHA7 Nonsense_Mutation p.R895* 0.12 TCGA-GN-A9SD-06 7 100456693 100456693 G A SLC12A9 Missense_Mutation p.R296Q 0.12 tolerated(0.29) benign(0.24) TCGA-GN-A9SD-06 7 102669175 102669175 C T FBXL13 Missense_Mutation p.R30H 0.06 tolerated(0.37) benign(0.001) TCGA-GN-A9SD-06 7 104752611 104752611 C T KMT2E Missense_Mutation p.P1470S 0.26 tolerated_low_confidence(0.78) benign(0.005) TCGA-GN-A9SD-06 7 128478724 128478724 G A FLNC Silent p.V426V 0.23 TCGA-GN-A9SD-06 7 138444508 138444508 C T ATP6V0A4 Missense_Mutation p.D210N 0.31 deleterious(0.03) possibly_damaging(0.898) TCGA-GN-A9SD-06 7 138444509 138444509 C T ATP6V0A4 Silent p.E209E 0.28 TCGA-GN-A9SD-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-GN-A9SD-06 7 142625881 142625881 C T TRPV5 Missense_Mutation p.D223N 0.26 tolerated(0.06) benign(0.134) TCGA-GN-A9SD-06 7 143748119 143748119 G C OR2A5 Missense_Mutation p.G209R 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-GN-A9SD-06 7 148863288 148863288 C T ZNF398 Silent p.S153S 0.23 TCGA-GN-A9SD-06 7 28844125 28844125 G A CREB5 Missense_Mutation p.G338S 0.04 tolerated(0.26) unknown(0) TCGA-GN-A9SD-06 7 39745739 39745739 G T RALA Missense_Mutation p.M172I 0.22 tolerated(0.13) benign(0.04) TCGA-GN-A9SD-06 7 4116784 4116784 G A SDK1 Silent p.L1055L 0.20 TCGA-GN-A9SD-06 7 44113519 44113519 G A POLM Missense_Mutation p.R393C 0.22 tolerated(0.12) benign(0.007) TCGA-GN-A9SD-06 7 55468923 55468923 G - LANCL2 Frame_Shift_Del p.E246Sfs*28 0.09 TCGA-GN-A9SD-06 7 72193803 72193803 A G TYW1B 3'Flank 0.18 TCGA-GN-A9SD-06 7 98449105 98449105 G A TMEM130 Silent p.I315I 0.23 TCGA-GN-A9SD-06 8 10464637 10464637 C T RP1L1 Missense_Mutation p.R2324K 0.20 unknown(0) TCGA-GN-A9SD-06 8 145649603 145649603 C T VPS28 Missense_Mutation p.D151N 0.26 deleterious(0.02) possibly_damaging(0.657) TCGA-GN-A9SD-06 8 22049582 22049582 C T BMP1 Silent p.S366S 0.20 TCGA-GN-A9SD-06 8 69621248 69621248 G A C8orf34 Missense_Mutation p.E421K 0.25 tolerated(0.13) benign(0.03) TCGA-GN-A9SD-06 8 93017275 93017275 G A RUNX1T1 Intron 0.12 TCGA-GN-A9SD-06 9 104432656 104432656 C T GRIN3A Missense_Mutation p.G680R 0.38 deleterious(0) probably_damaging(1) TCGA-GN-A9SD-06 9 115806400 115806400 T C ZFP37 Silent p.K166K 0.22 TCGA-GN-A9SD-06 9 134108913 134108913 G T NUP214 3'UTR 0.21 TCGA-GN-A9SD-06 9 134108914 134108914 C T NUP214 3'UTR 0.21 TCGA-GN-A9SD-06 9 17789474 17789474 C T SH3GL2 Missense_Mutation p.R184C 0.27 deleterious(0) possibly_damaging(0.768) TCGA-GN-A9SD-06 9 35078681 35078681 G A FANCG Silent p.N76N 0.21 TCGA-GN-A9SD-06 X 105189873 105189873 G A NRK Missense_Mutation p.D1358N 0.16 tolerated_low_confidence(0.09) probably_damaging(0.993) TCGA-GN-A9SD-06 X 107431122 107431122 C A COL4A6 Missense_Mutation p.G576C 0.24 probably_damaging(1) TCGA-GN-A9SD-06 X 110406879 110406879 C T PAK3 Silent p.S266S 0.17 TCGA-GN-A9SD-06 X 129498811 129498811 G A SLC25A14 Intron 0.14 TCGA-GN-A9SD-06 X 130419813 130419813 G A IGSF1 Missense_Mutation p.L103F 0.24 tolerated(0.73) benign(0.018) TCGA-GN-A9SD-06 X 151302939 151302939 T C MAGEA10 3'UTR 0.07 TCGA-GN-A9SD-06 X 151935382 151935382 G A MAGEA3 Missense_Mutation p.P262L 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-GN-A9SD-06 X 151935383 151935383 G C MAGEA3 Missense_Mutation p.P262A 0.18 tolerated(0.12) probably_damaging(0.951) TCGA-GN-A9SD-06 X 38534985 38534985 C A TSPAN7 Nonsense_Mutation p.Y156* 0.12 TCGA-GN-A9SD-06 X 54114378 54114378 C T FAM120C Missense_Mutation p.R816Q 0.10 deleterious(0) possibly_damaging(0.873) TCGA-HR-A2OG-06 10 103899089 103899089 C T PPRC1 Missense_Mutation p.P275L 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HR-A2OG-06 10 27499797 27499797 G A ACBD5 Missense_Mutation p.R384W 0.40 deleterious(0) possibly_damaging(0.828) TCGA-HR-A2OG-06 10 45429119 45429119 G A TMEM72 Missense_Mutation p.E82K 0.35 tolerated(1) benign(0.031) TCGA-HR-A2OG-06 10 61802491 61802491 C T ANK3 Silent p.T4364T 0.24 TCGA-HR-A2OG-06 10 88419746 88419746 C T OPN4 Silent p.L310L 0.34 TCGA-HR-A2OG-06 10 88769503 88769503 G A RP11-96C23.10 3'Flank 0.25 TCGA-HR-A2OG-06 10 93741539 93741539 C T BTAF1 Missense_Mutation p.A632V 0.49 tolerated(0.24) benign(0.01) TCGA-HR-A2OG-06 11 118037572 118037572 G A SCN2B 3'UTR 0.56 TCGA-HR-A2OG-06 11 55735475 55735475 G A OR10AG1 Silent p.F155F 0.57 TCGA-HR-A2OG-06 11 56043751 56043751 T C OR5T1 Missense_Mutation p.Y213H 0.12 tolerated(0.18) benign(0.078) TCGA-HR-A2OG-06 11 58660193 58660193 G A GLYATL1P2 RNA 0.25 TCGA-HR-A2OG-06 12 100797857 100797857 C T SLC17A8 Silent p.I365I 0.25 TCGA-HR-A2OG-06 12 121202819 121202819 G C SPPL3 Missense_Mutation p.R380G 0.22 deleterious(0.01) benign(0.014) TCGA-HR-A2OG-06 12 25259983 25259983 G A LRMP Missense_Mutation p.V419I 0.31 tolerated(0.64) benign(0.005) TCGA-HR-A2OG-06 12 42707759 42707759 C G ZCRB1 Silent p.P121P 0.23 TCGA-HR-A2OG-06 12 48143586 48143586 C T RAPGEF3 Missense_Mutation p.D278N 0.30 deleterious(0) probably_damaging(0.998) TCGA-HR-A2OG-06 12 50367207 50367207 C T AQP6 Missense_Mutation p.A84V 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-HR-A2OG-06 12 50367208 50367208 C T AQP6 Silent p.A84A 0.27 TCGA-HR-A2OG-06 12 55688288 55688288 C T OR6C6 Missense_Mutation p.M243I 0.30 deleterious_low_confidence(0.05) benign(0.042) TCGA-HR-A2OG-06 12 57496186 57496186 G A STAT6 Missense_Mutation p.R467W 0.27 deleterious(0) possibly_damaging(0.863) TCGA-HR-A2OG-06 12 57588387 57588387 A C LRP1 Missense_Mutation p.N2699T 0.28 possibly_damaging(0.697) TCGA-HR-A2OG-06 12 6125965 6125965 C T VWF Missense_Mutation p.E1709K 0.28 tolerated(0.1) benign(0.001) TCGA-HR-A2OG-06 12 66935661 66935661 G A GRIP1 Missense_Mutation p.S69L 0.15 deleterious(0) possibly_damaging(0.868) TCGA-HR-A2OG-06 12 70087558 70087558 C T BEST3 Missense_Mutation p.R126K 0.30 deleterious(0) probably_damaging(0.98) TCGA-HR-A2OG-06 12 75444664 75444664 G A KCNC2 Missense_Mutation p.T374I 0.20 deleterious(0) probably_damaging(0.987) TCGA-HR-A2OG-06 12 7805412 7805412 C T APOBEC1 Missense_Mutation p.E22K 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-HR-A2OG-06 12 8200805 8200805 C T FOXJ2 Missense_Mutation p.P382L 0.28 tolerated(0.64) benign(0.054) TCGA-HR-A2OG-06 12 97137828 97137828 C T C12orf55 Missense_Mutation p.R2530C 0.26 tolerated(0.19) benign(0.011) TCGA-HR-A2OG-06 13 103520502 103520502 T C BIVM-ERCC5 Missense_Mutation p.L1284P 0.09 deleterious(0) probably_damaging(0.991) TCGA-HR-A2OG-06 13 25265130 25265130 C T ATP12A Silent p.T276T 0.20 TCGA-HR-A2OG-06 13 49280991 49280991 C T CYSLTR2 Missense_Mutation p.S13F 0.45 tolerated(0.05) benign(0.01) TCGA-HR-A2OG-06 13 52548094 52548094 C T ATP7B Missense_Mutation p.G421E 0.55 deleterious(0) probably_damaging(1) TCGA-HR-A2OG-06 14 101350838 101350838 G A RTL1 Silent p.L96L 0.46 TCGA-HR-A2OG-06 14 101512845 101512845 C T MIR487B RNA 0.20 TCGA-HR-A2OG-06 14 106091486 106091486 G A IGHG4 Silent p.T136T 0.19 TCGA-HR-A2OG-06 14 21548918 21548918 C T ARHGEF40 Missense_Mutation p.R825C 0.28 deleterious(0) possibly_damaging(0.794) TCGA-HR-A2OG-06 14 24886211 24886211 C T NYNRIN Silent p.S1752S 0.14 TCGA-HR-A2OG-06 14 50877280 50877280 G A CDKL1 RNA 0.17 TCGA-HR-A2OG-06 14 62542093 62542093 C T SYT16 Missense_Mutation p.S326F 0.14 deleterious(0) probably_damaging(0.947) TCGA-HR-A2OG-06 14 74564499 74564499 T C LIN52 Silent p.P49P 0.26 TCGA-HR-A2OG-06 14 75367876 75367876 T C DLST Silent p.P389P 0.27 TCGA-HR-A2OG-06 15 22369163 22369163 G A OR4M2 Silent p.E196E 0.18 TCGA-HR-A2OG-06 15 34648262 34648262 G A NUTM1 Missense_Mutation p.G657R 0.18 tolerated(0.11) benign(0.086) TCGA-HR-A2OG-06 15 51792048 51792048 G A DMXL2 Missense_Mutation p.L1125F 0.18 deleterious(0) probably_damaging(1) TCGA-HR-A2OG-06 15 65988718 65988718 G A DENND4A Missense_Mutation p.S1022L 0.35 deleterious(0.02) benign(0.001) TCGA-HR-A2OG-06 15 74328428 74328428 A C PML Intron 0.21 TCGA-HR-A2OG-06 15 75557534 75557534 C T GOLGA6C Silent p.N212N 0.38 TCGA-HR-A2OG-06 15 79320136 79320136 A T RASGRF1 Missense_Mutation p.I443N 0.32 deleterious(0) probably_damaging(0.997) TCGA-HR-A2OG-06 15 90904315 90904316 TT - ZNF774 Frame_Shift_Del p.F418Yfs*17 0.20 TCGA-HR-A2OG-06 16 21049241 21049241 G A DNAH3 Missense_Mutation p.H1598Y 0.19 deleterious(0) probably_damaging(1) TCGA-HR-A2OG-06 16 21261120 21261120 C T ANKS4B Missense_Mutation p.A78V 0.12 tolerated(0.86) benign(0.247) TCGA-HR-A2OG-06 16 27689091 27689091 G A KIAA0556 Silent p.R194R 0.39 TCGA-HR-A2OG-06 16 3640721 3640721 G A SLX4 Missense_Mutation p.S973F 0.22 tolerated(0.23) benign(0.001) TCGA-HR-A2OG-06 16 57059751 57059751 C T NLRC5 Missense_Mutation p.A299V 0.25 deleterious(0) probably_damaging(0.995) TCGA-HR-A2OG-06 16 67913551 67913551 C T EDC4 Silent p.S565S 0.25 TCGA-HR-A2OG-06 16 70289658 70289658 C A AARS Silent p.V753V 0.10 TCGA-HR-A2OG-06 16 70553588 70553588 G A COG4 Missense_Mutation p.T73I 0.36 tolerated(0.31) benign(0.002) TCGA-HR-A2OG-06 16 71783811 71783811 C A AP1G1 Nonsense_Mutation p.E498* 0.23 TCGA-HR-A2OG-06 16 81819569 81819569 C T PLCG2 5'UTR 0.31 TCGA-HR-A2OG-06 17 10366889 10366889 C T MYH4 Silent p.R240R 0.39 TCGA-HR-A2OG-06 17 10436610 10436610 C T MYH2 Silent p.V811V 0.08 TCGA-HR-A2OG-06 17 18044418 18044418 G A MYO15A Missense_Mutation p.G1831E 0.45 unknown(0) TCGA-HR-A2OG-06 17 19611707 19611707 G A SLC47A2 Silent p.I215I 0.29 TCGA-HR-A2OG-06 17 39022959 39022959 C T KRT12 Nonsense_Mutation p.W160* 0.15 TCGA-HR-A2OG-06 17 39092676 39092676 A G KRT23 Silent p.G60G 0.39 TCGA-HR-A2OG-06 17 39674668 39674668 G A KRT15 Missense_Mutation p.H138Y 0.09 deleterious(0) possibly_damaging(0.522) TCGA-HR-A2OG-06 17 4087198 4087198 A C ANKFY1 Silent p.A611A 0.09 TCGA-HR-A2OG-06 17 41342729 41342729 T G NBR1 Missense_Mutation p.S267A 0.24 tolerated(0.46) benign(0.005) TCGA-HR-A2OG-06 17 47788518 47788518 G A FAM117A 3'UTR 0.30 TCGA-HR-A2OG-06 17 4836484 4836484 C T GP1BA Silent p.L195L 0.24 TCGA-HR-A2OG-06 17 61622553 61622553 C T KCNH6 Silent p.A873A 0.12 TCGA-HR-A2OG-06 17 71357873 71357873 A C SDK2 Missense_Mutation p.F1806C 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-HR-A2OG-06 17 80195441 80195441 C T SLC16A3 Silent p.F265F 0.16 TCGA-HR-A2OG-06 18 20573768 20573768 C T RBBP8 Missense_Mutation p.P633S 0.39 deleterious(0) probably_damaging(0.992) TCGA-HR-A2OG-06 18 20573769 20573769 C T RBBP8 Missense_Mutation p.P633L 0.40 tolerated(0.08) possibly_damaging(0.669) TCGA-HR-A2OG-06 18 50912435 50912435 C T DCC Silent p.I794I 0.09 TCGA-HR-A2OG-06 19 10071188 10071188 G A COL5A3 Nonsense_Mutation p.R1713* 0.27 TCGA-HR-A2OG-06 19 10893739 10893739 C T DNM2 Silent p.A264A 0.37 TCGA-HR-A2OG-06 19 11658678 11658678 G A CNN1 Missense_Mutation p.E153K 0.22 tolerated(0.08) benign(0.048) TCGA-HR-A2OG-06 19 15366921 15366921 G A BRD4 Missense_Mutation p.P569S 0.35 possibly_damaging(0.641) TCGA-HR-A2OG-06 19 20736569 20736569 G A ZNF737 Missense_Mutation p.R26W 0.10 deleterious(0.04) possibly_damaging(0.891) TCGA-HR-A2OG-06 19 22940885 22940885 C T ZNF99 Missense_Mutation p.R609K 0.17 tolerated(0.07) benign(0.005) TCGA-HR-A2OG-06 19 41008156 41008156 C T SPTBN4 Missense_Mutation p.S340F 0.17 deleterious(0) possibly_damaging(0.677) TCGA-HR-A2OG-06 19 41008157 41008157 C T SPTBN4 Silent p.S340S 0.17 TCGA-HR-A2OG-06 19 43411107 43411107 C T PSG6 Missense_Mutation p.E403K 0.36 tolerated(0.19) possibly_damaging(0.466) TCGA-HR-A2OG-06 19 44892134 44892134 G A ZNF285 Silent p.I91I 0.19 TCGA-HR-A2OG-06 19 48305309 48305309 G A TPRX1 Missense_Mutation p.P320L 0.33 tolerated(0.1) possibly_damaging(0.851) TCGA-HR-A2OG-06 19 49344473 49344473 G A PLEKHA4 Missense_Mutation p.S613F 0.36 deleterious_low_confidence(0.04) benign(0.013) TCGA-HR-A2OG-06 19 50097782 50097782 C T PRR12 Missense_Mutation p.L91F 0.18 benign(0.002) TCGA-HR-A2OG-06 19 52132319 52132319 C T SIGLEC5 Silent p.Q237Q 0.22 TCGA-HR-A2OG-06 19 55512302 55512302 G A NLRP2 3'UTR 0.28 TCGA-HR-A2OG-06 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.34 TCGA-HR-A2OG-06 19 57088659 57088659 G A ZNF470 Missense_Mutation p.E288K 0.22 deleterious(0) probably_damaging(0.995) TCGA-HR-A2OG-06 19 57326708 57326708 C T PEG3 Silent p.K1034K 0.22 TCGA-HR-A2OG-06 19 7806401 7806401 T C CD209 3'UTR 0.23 TCGA-HR-A2OG-06 19 7830505 7830505 C T CLEC4M Intron 0.20 TCGA-HR-A2OG-06 19 8841397 8841397 G A OR2Z1 Missense_Mutation p.D3N 0.27 tolerated(0.57) benign(0.001) TCGA-HR-A2OG-06 1 115128135 115128135 G A DENND2C 3'UTR 0.75 TCGA-HR-A2OG-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.61 tolerated(0.06) benign(0.006) TCGA-HR-A2OG-06 1 150679276 150679276 G A HORMAD1 Missense_Mutation p.P186L 0.62 deleterious(0.03) probably_damaging(0.958) TCGA-HR-A2OG-06 1 152187040 152187040 A T HRNR Silent p.T2355T 0.11 TCGA-HR-A2OG-06 1 152187041 152187041 G T HRNR Missense_Mutation p.T2355N 0.11 unknown(0) TCGA-HR-A2OG-06 1 152285831 152285831 C T FLG Missense_Mutation p.E511K 0.58 possibly_damaging(0.709) TCGA-HR-A2OG-06 1 153391775 153391775 G A S100A7A Missense_Mutation p.G99E 0.55 tolerated(0.1) benign(0.05) TCGA-HR-A2OG-06 1 155450565 155450565 C T ASH1L Missense_Mutation p.S699N 0.46 tolerated_low_confidence(0.49) benign(0.006) TCGA-HR-A2OG-06 1 185062287 185062287 C T RNF2 Missense_Mutation p.P115S 0.66 deleterious(0) probably_damaging(0.984) TCGA-HR-A2OG-06 1 196714956 196714956 G A CFH Missense_Mutation p.G1107E 0.51 tolerated(0.06) possibly_damaging(0.527) TCGA-HR-A2OG-06 1 197071419 197071419 G A ASPM Missense_Mutation p.S2321L 0.54 tolerated(0.21) benign(0.033) TCGA-HR-A2OG-06 1 29581894 29581894 C T PTPRU Missense_Mutation p.R61W 0.15 tolerated(0.07) possibly_damaging(0.742) TCGA-HR-A2OG-06 1 78426120 78426120 G - FUBP1 Frame_Shift_Del p.H469Mfs*196 0.63 TCGA-HR-A2OG-06 1 78426122 78426122 G A FUBP1 Missense_Mutation p.P468L 0.75 tolerated(0.69) unknown(0) TCGA-HR-A2OG-06 20 17475568 17475568 G A BFSP1 Silent p.N383N 0.35 TCGA-HR-A2OG-06 20 25303973 25303973 G A ABHD12 Missense_Mutation p.T137I 0.38 tolerated(0.27) benign(0.043) TCGA-HR-A2OG-06 20 33232014 33232014 G A PIGU Missense_Mutation p.T91I 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-HR-A2OG-06 20 3553591 3553591 C T ATRN Silent p.S695S 0.45 TCGA-HR-A2OG-06 20 43141631 43141631 G A SERINC3 Missense_Mutation p.P69L 0.09 deleterious(0.01) probably_damaging(1) TCGA-HR-A2OG-06 20 47870325 47870325 G A ZNFX1 Silent p.L995L 0.43 TCGA-HR-A2OG-06 20 76875 76875 G A DEFB125 Silent p.L96L 0.12 TCGA-HR-A2OG-06 22 26688508 26688508 G A SEZ6L Silent p.A77A 0.31 TCGA-HR-A2OG-06 22 32479091 32479091 C T SLC5A1 Missense_Mutation p.T205I 0.14 deleterious(0.05) possibly_damaging(0.878) TCGA-HR-A2OG-06 22 41626181 41626181 G A L3MBTL2 Missense_Mutation p.A682T 0.25 tolerated_low_confidence(0.28) benign(0.004) TCGA-HR-A2OG-06 2 103335191 103335191 G A MFSD9 Silent p.A371A 0.28 TCGA-HR-A2OG-06 2 120362355 120362355 C T PCDP1 Missense_Mutation p.P300L 0.28 tolerated(0.51) benign(0.007) TCGA-HR-A2OG-06 2 120723176 120723176 G A PTPN4 Missense_Mutation p.R838Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-HR-A2OG-06 2 179574440 179574440 G A TTN Missense_Mutation p.P9536S 0.09 TCGA-HR-A2OG-06 2 179587136 179587136 T C TTN Missense_Mutation p.R7460G 0.18 TCGA-HR-A2OG-06 2 179635322 179635322 G A TTN Missense_Mutation p.P2733S 0.28 TCGA-HR-A2OG-06 2 179635323 179635323 G A TTN Silent p.H2732H 0.29 TCGA-HR-A2OG-06 2 182346331 182346331 C T ITGA4 Missense_Mutation p.S254L 0.31 deleterious(0) possibly_damaging(0.703) TCGA-HR-A2OG-06 2 196545152 196545152 A T SLC39A10 Missense_Mutation p.Q129L 0.26 tolerated(0.33) benign(0.003) TCGA-HR-A2OG-06 2 196545497 196545497 C T SLC39A10 Missense_Mutation p.S244F 0.19 deleterious(0.01) benign(0.004) TCGA-HR-A2OG-06 2 207041026 207041026 G A GPR1 Missense_Mutation p.R316W 0.19 deleterious(0.02) possibly_damaging(0.724) TCGA-HR-A2OG-06 2 217543652 217543652 G A IGFBP5 Missense_Mutation p.S163F 0.29 tolerated(0.4) benign(0.396) TCGA-HR-A2OG-06 2 219294086 219294086 G A VIL1 Missense_Mutation p.E216K 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-HR-A2OG-06 2 219618933 219618933 G A TTLL4 Missense_Mutation p.G1141S 0.35 tolerated_low_confidence(0.21) benign(0.005) TCGA-HR-A2OG-06 2 27465600 27465600 C T CAD Missense_Mutation p.P2112L 0.32 deleterious(0) probably_damaging(0.999) TCGA-HR-A2OG-06 2 29294548 29294548 C T C2orf71 Silent p.K860K 0.38 TCGA-HR-A2OG-06 2 37374849 37374849 C T EIF2AK2 Missense_Mutation p.G34E 0.21 tolerated(0.06) probably_damaging(1) TCGA-HR-A2OG-06 2 64685622 64685622 G A LGALSL 3'UTR 0.15 TCGA-HR-A2OG-06 2 73747010 73747010 T C ALMS1 Silent p.S3215S 0.31 TCGA-HR-A2OG-06 2 80101318 80101318 C T CTNNA2 Silent p.A234A 0.30 TCGA-HR-A2OG-06 2 89475866 89475866 C T IGKV2-24 Silent p.R102R 0.35 TCGA-HR-A2OG-06 2 89544574 89544574 C T IGKV2-30 Missense_Mutation p.G17E 0.29 tolerated(0.08) benign(0.246) TCGA-HR-A2OG-06 3 111317000 111317000 C T CD96 Missense_Mutation p.P297S 0.32 deleterious(0) probably_damaging(0.999) TCGA-HR-A2OG-06 3 111997653 111997653 G A SLC9C1 Missense_Mutation p.R81C 0.31 tolerated(0.12) benign(0.004) TCGA-HR-A2OG-06 3 123419455 123419455 G A MYLK Missense_Mutation p.R954C 0.32 deleterious(0) benign(0.007) TCGA-HR-A2OG-06 3 142218479 142218479 A T ATR Nonsense_Mutation p.Y1790* 0.34 TCGA-HR-A2OG-06 3 151166575 151166575 C T IGSF10 Silent p.P398P 0.15 TCGA-HR-A2OG-06 3 156763598 156763598 G A LEKR1 3'UTR 0.41 TCGA-HR-A2OG-06 3 17279855 17279855 T - TBC1D5 Frame_Shift_Del p.N463Ifs*6 0.43 TCGA-HR-A2OG-06 3 183994343 183994343 G A ECE2 Intron 0.24 TCGA-HR-A2OG-06 3 186460064 186460064 C T KNG1 Missense_Mutation p.P627S 0.32 deleterious(0.01) probably_damaging(0.922) TCGA-HR-A2OG-06 3 192516600 192516600 C T MB21D2 Missense_Mutation p.E351K 0.48 tolerated(0.11) benign(0.243) TCGA-HR-A2OG-06 3 28365566 28365566 A G AZI2 Silent p.D382D 0.27 TCGA-HR-A2OG-06 3 30045447 30045447 G A RBMS3 3'UTR 0.26 TCGA-HR-A2OG-06 3 46399716 46399716 G A CCR2 Missense_Mutation p.R233Q 0.12 tolerated(0.07) possibly_damaging(0.746) TCGA-HR-A2OG-06 3 47957837 47957837 G A MAP4 Missense_Mutation p.P494S 0.34 tolerated(0.27) benign(0.004) TCGA-HR-A2OG-06 3 97868962 97868962 C T OR5H14 Missense_Mutation p.L245F 0.15 tolerated(0.39) possibly_damaging(0.666) TCGA-HR-A2OG-06 3 9982599 9982599 G A CRELD1 Missense_Mutation p.G176R 0.45 tolerated(0.45) benign(0.009) TCGA-HR-A2OG-06 3 9982600 9982600 G A CRELD1 Missense_Mutation p.G176E 0.45 tolerated(0.47) benign(0.009) TCGA-HR-A2OG-06 4 134071330 134071330 T G PCDH10 Missense_Mutation p.M12R 0.11 tolerated(0.29) benign(0.065) TCGA-HR-A2OG-06 4 141543721 141543721 G C TBC1D9 Missense_Mutation p.N1143K 0.15 tolerated_low_confidence(0.81) benign(0.061) TCGA-HR-A2OG-06 4 146563584 146563584 G A MMAA Missense_Mutation p.R170K 0.11 tolerated(0.25) benign(0.014) TCGA-HR-A2OG-06 4 146563585 146563585 A C MMAA Missense_Mutation p.R170S 0.11 tolerated(0.16) benign(0.026) TCGA-HR-A2OG-06 4 155505773 155505773 C T FGA Missense_Mutation p.E702K 0.35 tolerated(1) benign(0.005) TCGA-HR-A2OG-06 4 156135252 156135252 T A NPY2R Missense_Mutation p.I54K 0.42 deleterious(0) probably_damaging(0.999) TCGA-HR-A2OG-06 4 156634314 156634314 C T GUCY1A3 Missense_Mutation p.S384L 0.09 deleterious(0) probably_damaging(0.996) TCGA-HR-A2OG-06 4 164271557 164271557 G A NPY5R Silent p.L44L 0.40 TCGA-HR-A2OG-06 4 186299341 186299341 C T LRP2BP 5'UTR 0.39 TCGA-HR-A2OG-06 4 44709924 44709924 C T GNPDA2 Missense_Mutation p.G205E 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-HR-A2OG-06 4 69434077 69434077 G A UGT2B17 Silent p.I42I 0.62 TCGA-HR-A2OG-06 4 72316976 72316976 G A SLC4A4 Missense_Mutation p.G427E 0.11 tolerated(0.58) possibly_damaging(0.844) TCGA-HR-A2OG-06 4 7716002 7716002 C T SORCS2 Silent p.F675F 0.67 TCGA-HR-A2OG-06 4 88902728 88902728 C T SPP1 Silent p.N106N 0.12 TCGA-HR-A2OG-06 5 118965409 118965409 G T FAM170A 5'UTR 0.20 TCGA-HR-A2OG-06 5 121787239 121787239 G A SNCAIP Silent p.R899R 0.13 TCGA-HR-A2OG-06 5 129037099 129037099 G A ADAMTS19 Nonsense_Mutation p.W985* 0.16 TCGA-HR-A2OG-06 5 140763310 140763310 C T PCDHGA7 Missense_Mutation p.R282W 0.32 tolerated_low_confidence(0.18) benign(0.035) TCGA-HR-A2OG-06 5 142254733 142254733 G A ARHGAP26 Silent p.R103R 0.18 TCGA-HR-A2OG-06 5 150843174 150843174 C T SLC36A1 Silent p.L68L 0.14 TCGA-HR-A2OG-06 5 159776386 159776386 C T C1QTNF2 Missense_Mutation p.G261D 0.12 deleterious(0) probably_damaging(1) TCGA-HR-A2OG-06 5 171766534 171766534 C T SH3PXD2B Silent p.R525R 0.12 TCGA-HR-A2OG-06 5 32263339 32263339 G A MTMR12 Missense_Mutation p.P198L 0.36 tolerated(0.19) benign(0.005) TCGA-HR-A2OG-06 5 40959662 40959662 C T C7 Missense_Mutation p.S534F 0.56 tolerated(0.63) benign(0.049) TCGA-HR-A2OG-06 5 56527096 56527096 C T GPBP1 Missense_Mutation p.T127I 0.42 tolerated(0.17) benign(0.006) TCGA-HR-A2OG-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.43 TCGA-HR-A2OG-06 5 76028770 76028770 G A F2R Silent p.K240K 0.34 TCGA-HR-A2OG-06 5 76028771 76028771 G A F2R Missense_Mutation p.E241K 0.30 deleterious(0.01) probably_damaging(0.949) TCGA-HR-A2OG-06 6 128403707 128403707 C T PTPRK Nonsense_Mutation p.W551* 0.23 TCGA-HR-A2OG-06 6 128505667 128505667 C T PTPRK Missense_Mutation p.E358K 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-HR-A2OG-06 6 129609139 129609139 C T LAMA2 Silent p.G895G 0.19 TCGA-HR-A2OG-06 6 129609140 129609140 C T LAMA2 Missense_Mutation p.R896W 0.19 deleterious(0.02) benign(0.047) TCGA-HR-A2OG-06 6 133044077 133044077 C T VNN3 3'UTR 0.15 TCGA-HR-A2OG-06 6 150209632 150209632 G A RAET1E 3'UTR 0.18 TCGA-HR-A2OG-06 6 161127528 161127528 G A PLG Missense_Mutation p.E47K 0.25 tolerated(0.59) benign(0.033) TCGA-HR-A2OG-06 6 31627574 31627574 C T C6orf47 Missense_Mutation p.E51K 0.13 deleterious_low_confidence(0.01) benign(0.043) TCGA-HR-A2OG-06 6 32026058 32026058 G A TNXB Silent p.S2534S 0.17 TCGA-HR-A2OG-06 6 33385045 33385045 G A CUTA Silent p.I119I 0.09 TCGA-HR-A2OG-06 6 34826330 34826330 C T UHRF1BP1 Missense_Mutation p.R733C 0.23 tolerated(0.06) benign(0.066) TCGA-HR-A2OG-06 6 35927241 35927241 G A SLC26A8 Missense_Mutation p.P620L 0.36 deleterious(0) possibly_damaging(0.847) TCGA-HR-A2OG-06 6 46623699 46623699 C T SLC25A27 Silent p.L76L 0.32 TCGA-HR-A2OG-06 6 56469339 56469339 A G DST Intron 0.39 TCGA-HR-A2OG-06 6 7374052 7374052 C T CAGE1 Missense_Mutation p.E334K 0.33 deleterious(0.04) probably_damaging(0.953) TCGA-HR-A2OG-06 7 107114811 107114811 C A GPR22 Silent p.I102I 0.25 TCGA-HR-A2OG-06 7 107114812 107114812 C T GPR22 Missense_Mutation p.L103F 0.23 deleterious(0.01) possibly_damaging(0.697) TCGA-HR-A2OG-06 7 11633060 11633060 G C THSD7A Silent p.S364S 0.39 TCGA-HR-A2OG-06 7 127669308 127669308 C T LRRC4 Silent p.T462T 0.21 TCGA-HR-A2OG-06 7 138312999 138312999 C T SVOPL Missense_Mutation p.G325R 0.27 tolerated(0.1) benign(0.005) TCGA-HR-A2OG-06 7 139734127 139734127 G A PARP12 Silent p.F443F 0.28 TCGA-HR-A2OG-06 7 143029880 143029880 G A CLCN1 Missense_Mutation p.D439N 0.23 tolerated(0.19) benign(0.225) TCGA-HR-A2OG-06 7 143417076 143417076 A T FAM115C Missense_Mutation p.K308N 0.42 deleterious(0.02) benign(0.068) TCGA-HR-A2OG-06 7 41730045 41730045 G A INHBA Missense_Mutation p.P162S 0.19 tolerated(0.65) benign(0.052) TCGA-HR-A2OG-06 7 48048663 48048663 G A SUN3 Missense_Mutation p.R100C 0.35 deleterious(0) possibly_damaging(0.77) TCGA-HR-A2OG-06 7 4871806 4871806 T G RADIL Missense_Mutation p.K474Q 0.48 tolerated(0.07) probably_damaging(0.918) TCGA-HR-A2OG-06 7 73449699 73449699 C T ELN Missense_Mutation p.P30S 0.34 unknown(0) TCGA-HR-A2OG-06 7 73770794 73770794 C T CLIP2 Silent p.I286I 0.20 TCGA-HR-A2OG-06 7 86568250 86568250 G A KIAA1324L Missense_Mutation p.P292S 0.22 deleterious(0.03) benign(0.248) TCGA-HR-A2OG-06 7 92932844 92932844 C T CCDC132 Silent p.F478F 0.19 TCGA-HR-A2OG-06 7 99022519 99022519 G A ATP5J2-PTCD1 Silent p.L595L 0.26 TCGA-HR-A2OG-06 7 99022520 99022520 G A ATP5J2-PTCD1 Silent p.V594V 0.26 TCGA-HR-A2OG-06 7 99802628 99802628 G A STAG3 Silent p.K984K 0.29 TCGA-HR-A2OG-06 8 106814337 106814337 C T ZFPM2 Missense_Mutation p.P676L 0.17 tolerated(0.09) benign(0.046) TCGA-HR-A2OG-06 8 23003354 23003354 G A TNFRSF10D Missense_Mutation p.S188F 0.17 deleterious(0.04) possibly_damaging(0.55) TCGA-HR-A2OG-06 8 25364680 25364680 C T CDCA2 Missense_Mutation p.S833F 0.30 deleterious(0) probably_damaging(0.992) TCGA-HR-A2OG-06 8 25715842 25715842 A G EBF2 Silent p.P507P 0.21 TCGA-HR-A2OG-06 8 3224606 3224606 C T CSMD1 Silent p.R1021R 0.18 TCGA-HR-A2OG-06 8 76471069 76471069 A G HNF4G Missense_Mutation p.K297R 0.18 tolerated(0.28) benign(0.072) TCGA-HR-A2OG-06 8 77766201 77766201 A T ZFHX4 Missense_Mutation p.Q2348H 0.22 probably_damaging(0.979) TCGA-HR-A2OG-06 9 104079650 104079650 A G LPPR1 Missense_Mutation p.M273V 0.29 tolerated(1) benign(0) TCGA-HR-A2OG-06 9 127915952 127915952 G A PPP6C Nonsense_Mutation p.R214* 0.48 TCGA-HR-A2OG-06 9 130493449 130493449 G A TTC16 Missense_Mutation p.R796K 0.62 tolerated(1) benign(0.079) TCGA-HR-A2OG-06 9 137990199 137990199 C T OLFM1 Missense_Mutation p.A157V 0.56 tolerated(0.28) possibly_damaging(0.739) TCGA-HR-A2OG-06 9 14819293 14819293 C T FREM1 Missense_Mutation p.G829R 0.45 deleterious(0) possibly_damaging(0.84) TCGA-HR-A2OG-06 9 4585545 4585545 C T SLC1A1 Missense_Mutation p.T521I 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HR-A2OG-06 9 5969206 5969206 G A KIAA2026 Missense_Mutation p.S342L 0.37 deleterious(0) probably_damaging(0.962) TCGA-HR-A2OG-06 9 78973505 78973505 C T PCSK5 Silent p.S1750S 0.68 TCGA-HR-A2OG-06 9 94171671 94171671 C T NFIL3 Missense_Mutation p.R449K 0.59 tolerated(0.19) possibly_damaging(0.905) TCGA-HR-A2OG-06 X 100183350 100183350 C T XKRX 5'UTR 0.16 TCGA-HR-A2OG-06 X 107457458 107457458 C T COL4A6 Missense_Mutation p.G110S 0.15 unknown(0) TCGA-HR-A2OG-06 X 107464486 107464486 C T COL4A6 Missense_Mutation p.G89E 0.17 unknown(0) TCGA-HR-A2OG-06 X 110439801 110439801 C T PAK3 Missense_Mutation p.S483F 0.10 deleterious(0) probably_damaging(1) TCGA-HR-A2OG-06 X 111195594 111195594 G A TRPC5 Missense_Mutation p.P19S 0.23 tolerated(0.06) possibly_damaging(0.607) TCGA-HR-A2OG-06 X 114239865 114239865 C T IL13RA2 Silent p.S337S 0.21 TCGA-HR-A2OG-06 X 11782035 11782035 G A MSL3 Missense_Mutation p.E296K 0.14 deleterious(0.05) probably_damaging(0.91) TCGA-HR-A2OG-06 X 128696746 128696746 G T OCRL Missense_Mutation p.L409F 0.17 tolerated(0.08) benign(0.342) TCGA-HR-A2OG-06 X 132351449 132351449 A C TFDP3 Missense_Mutation p.F280C 0.09 deleterious(0) possibly_damaging(0.651) TCGA-HR-A2OG-06 X 144905571 144905571 G A SLITRK2 Nonsense_Mutation p.W543* 0.17 TCGA-HR-A2OG-06 X 149938784 149938784 T C CD99L2 Silent p.E238E 0.16 TCGA-HR-A2OG-06 X 154157824 154157824 G A F8 Missense_Mutation p.S1414L 0.26 deleterious(0.04) benign(0) TCGA-HR-A2OG-06 X 21450758 21450758 A T CNKSR2 Missense_Mutation p.K86I 0.19 deleterious(0) possibly_damaging(0.565) TCGA-HR-A2OG-06 X 27766703 27766703 G A DCAF8L2 Missense_Mutation p.R564Q 0.36 deleterious(0.02) probably_damaging(0.914) TCGA-HR-A2OG-06 X 37027043 37027043 C T FAM47C Missense_Mutation p.S187F 0.33 tolerated(0.58) possibly_damaging(0.748) TCGA-HR-A2OG-06 X 37312691 37312691 C T PRRG1 Silent p.S158S 0.15 TCGA-HR-A2OG-06 X 39932638 39932638 G A BCOR Missense_Mutation p.P654L 0.23 deleterious(0) possibly_damaging(0.889) TCGA-HR-A2OG-06 X 50659023 50659023 G A BMP15 Missense_Mutation p.G199R 0.17 tolerated(0.54) benign(0.003) TCGA-HR-A2OG-06 X 51640148 51640148 G A MAGED1 Missense_Mutation p.R522Q 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.509) TCGA-HR-A2OG-06 X 69397495 69397495 G A DGAT2L6 Nonsense_Mutation p.W21* 0.19 TCGA-HR-A2OH-06 10 15688978 15688978 C T ITGA8 Silent p.G358G 0.21 TCGA-HR-A2OH-06 10 89653814 89653814 C T PTEN Missense_Mutation p.P38S 0.29 deleterious(0) probably_damaging(0.991) TCGA-HR-A2OH-06 10 89653815 89653815 C T PTEN Missense_Mutation p.P38L 0.29 deleterious(0) probably_damaging(0.997) TCGA-HR-A2OH-06 10 96454741 96454741 C T CYP2C18 Silent p.F183F 0.27 TCGA-HR-A2OH-06 10 96805591 96805591 G A CYP2C8 Silent p.L313L 0.24 TCGA-HR-A2OH-06 11 113848577 113848577 C T HTR3A Missense_Mutation p.P57L 0.24 deleterious(0) probably_damaging(0.997) TCGA-HR-A2OH-06 11 120707551 120707551 C T GRIK4 Silent p.L248L 0.26 TCGA-HR-A2OH-06 11 1619166 1619166 C T KRTAP5-2 Silent p.K105K 0.30 TCGA-HR-A2OH-06 11 4824685 4824685 C T OR52R1 Missense_Mutation p.G309E 0.29 tolerated(0.29) benign(0.197) TCGA-HR-A2OH-06 11 57971240 57971240 C T OR1S2 Silent p.A138A 0.32 TCGA-HR-A2OH-06 11 58035171 58035171 G A OR10W1 Silent p.L54L 0.27 TCGA-HR-A2OH-06 11 66136997 66136997 G A SLC29A2 Nonsense_Mutation p.Q40* 0.24 TCGA-HR-A2OH-06 11 74545777 74545777 G A RNF169 Missense_Mutation p.R300K 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-HR-A2OH-06 12 100787176 100787176 C T SLC17A8 Missense_Mutation p.S168L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-HR-A2OH-06 12 54854188 54854188 G A GTSF1 Silent p.L154L 0.53 TCGA-HR-A2OH-06 12 56077753 56077753 G A METTL7B Missense_Mutation p.E219K 0.37 tolerated(0.37) benign(0.005) TCGA-HR-A2OH-06 12 9885648 9885648 G A CLECL1 Silent p.F71F 0.29 TCGA-HR-A2OH-06 12 99038328 99038328 G A IKBIP Missense_Mutation p.S51L 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-HR-A2OH-06 13 115002333 115002333 A G CDC16 Missense_Mutation p.R55G 0.27 deleterious(0) probably_damaging(0.983) TCGA-HR-A2OH-06 13 20221047 20221047 C T MPHOSPH8 Silent p.D278D 0.16 TCGA-HR-A2OH-06 14 104263804 104263804 G A PPP1R13B Missense_Mutation p.P21S 0.09 deleterious(0) probably_damaging(0.999) TCGA-HR-A2OH-06 14 23512032 23512032 G A PSMB11 Missense_Mutation p.E200K 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-HR-A2OH-06 14 60921813 60921813 G A C14orf39 Missense_Mutation p.P470L 0.20 deleterious(0) probably_damaging(0.958) TCGA-HR-A2OH-06 14 60921814 60921814 G A C14orf39 Missense_Mutation p.P470S 0.20 tolerated(0.07) probably_damaging(0.932) TCGA-HR-A2OH-06 14 63784382 63784382 C T GPHB5 RNA 0.12 TCGA-HR-A2OH-06 15 33955848 33955848 C T RYR3 Silent p.F1843F 0.18 TCGA-HR-A2OH-06 15 50534764 50534764 G A HDC Missense_Mutation p.T561I 0.14 deleterious_low_confidence(0) benign(0.13) TCGA-HR-A2OH-06 15 74911677 74911677 C T CLK3 Missense_Mutation p.S195F 0.21 deleterious(0.04) possibly_damaging(0.641) TCGA-HR-A2OH-06 15 78782786 78782786 C T IREB2 Missense_Mutation p.S700F 0.21 deleterious(0.03) benign(0.002) TCGA-HR-A2OH-06 15 86940643 86940643 G A AGBL1 Silent p.E761E 0.15 TCGA-HR-A2OH-06 15 90137712 90137712 C T TICRR Silent p.C536C 0.16 TCGA-HR-A2OH-06 15 97326811 97326811 G A SPATA8 5'UTR 0.26 TCGA-HR-A2OH-06 15 99758900 99758900 C T TTC23 Silent p.E158E 0.18 TCGA-HR-A2OH-06 16 20575994 20575994 C T ACSM2B Silent p.E58E 0.20 TCGA-HR-A2OH-06 16 20575996 20575996 C T ACSM2B Missense_Mutation p.E58K 0.19 deleterious(0) probably_damaging(0.989) TCGA-HR-A2OH-06 16 20702464 20702464 G A ACSM1 Missense_Mutation p.S16F 0.18 tolerated(0.25) benign(0.01) TCGA-HR-A2OH-06 16 30006919 30006919 C T HIRIP3 Missense_Mutation p.R3Q 0.12 tolerated(0.08) benign(0.013) TCGA-HR-A2OH-06 16 66424357 66424357 G A CDH5 Missense_Mutation p.G278D 0.18 deleterious(0) possibly_damaging(0.85) TCGA-HR-A2OH-06 17 10359836 10359836 C T MYH4 Missense_Mutation p.G645D 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-HR-A2OH-06 17 10432012 10432012 C A MYH2 Missense_Mutation p.A1247S 0.19 tolerated(0.52) benign(0.014) TCGA-HR-A2OH-06 17 11700945 11700945 G A DNAH9 Missense_Mutation p.S2752N 0.21 benign(0.001) TCGA-HR-A2OH-06 17 37899245 37899245 G A GRB7 Missense_Mutation p.R157Q 0.33 deleterious(0.03) benign(0.315) TCGA-HR-A2OH-06 17 41108528 41108528 T C AARSD1 Missense_Mutation p.T147A 0.10 deleterious(0.01) benign(0.059) TCGA-HR-A2OH-06 17 41958897 41958897 C T MPP2 Missense_Mutation p.E248K 0.24 deleterious(0) probably_damaging(0.993) TCGA-HR-A2OH-06 17 4577850 4577850 C T PELP1 Missense_Mutation p.G513R 0.24 probably_damaging(0.959) TCGA-HR-A2OH-06 17 4577851 4577851 T A PELP1 Missense_Mutation p.K512N 0.26 probably_damaging(0.984) TCGA-HR-A2OH-06 17 78316946 78316946 G A RNF213 Missense_Mutation p.V2002M 0.34 probably_damaging(0.966) TCGA-HR-A2OH-06 19 10200710 10200710 C T C19orf66 Missense_Mutation p.P124L 0.40 deleterious(0.01) benign(0.128) TCGA-HR-A2OH-06 19 17571529 17571529 G A NXNL1 Silent p.F50F 0.26 TCGA-HR-A2OH-06 19 22379493 22379493 G A ZNF676 5'UTR 0.21 TCGA-HR-A2OH-06 19 39963882 39963882 G C SUPT5H Silent p.G766G 0.34 TCGA-HR-A2OH-06 19 48715042 48715042 G A CARD8 Silent p.A513A 0.17 TCGA-HR-A2OH-06 19 49012169 49012169 G A LMTK3 Missense_Mutation p.L195F 0.20 probably_damaging(1) TCGA-HR-A2OH-06 19 49852044 49852044 G A TEAD2 Silent p.A221A 0.15 TCGA-HR-A2OH-06 19 51219543 51219543 G A SHANK1 Missense_Mutation p.P150S 0.14 probably_damaging(0.996) TCGA-HR-A2OH-06 19 54238155 54238155 G A MIR518D RNA 0.18 TCGA-HR-A2OH-06 19 56424151 56424151 G A NLRP13 Silent p.I344I 0.16 TCGA-HR-A2OH-06 19 58549328 58549328 C T ZSCAN1 Missense_Mutation p.R42W 0.15 deleterious(0) probably_damaging(0.999) TCGA-HR-A2OH-06 19 590414 590414 G A HCN2 Missense_Mutation p.G157S 0.28 tolerated(0.74) benign(0.017) TCGA-HR-A2OH-06 19 8996340 8996340 G A MUC16 Silent p.N13744N 0.22 TCGA-HR-A2OH-06 19 9059447 9059447 G A MUC16 Silent p.I9333I 0.21 TCGA-HR-A2OH-06 19 9677580 9677580 G A ZNF121 Missense_Mutation p.A70V 0.24 tolerated(0.2) benign(0.22) TCGA-HR-A2OH-06 1 103491454 103491454 C T COL11A1 Intron 0.17 TCGA-HR-A2OH-06 1 150940901 150940901 G A CERS2 Silent p.F87F 0.30 TCGA-HR-A2OH-06 1 152784798 152784798 A G LCE1B 5'UTR 0.29 TCGA-HR-A2OH-06 1 154919984 154919984 T C PBXIP1 Missense_Mutation p.D260G 0.17 tolerated(0.25) benign(0.033) TCGA-HR-A2OH-06 1 158368507 158368507 G A OR10T2 Silent p.V250V 0.22 TCGA-HR-A2OH-06 1 158650408 158650408 C T SPTA1 Missense_Mutation p.V215I 0.29 tolerated(0.16) benign(0.063) TCGA-HR-A2OH-06 1 161043573 161043573 C T PVRL4 Silent p.L390L 0.10 TCGA-HR-A2OH-06 1 161275594 161275594 G A MPZ 3'UTR 0.33 TCGA-HR-A2OH-06 1 163044374 163044374 G A RGS4 3'UTR 0.28 TCGA-HR-A2OH-06 1 167339406 167339406 C T POU2F1 Silent p.L79L 0.26 TCGA-HR-A2OH-06 1 172356371 172356371 G A DNM3 Silent p.R719R 0.26 TCGA-HR-A2OH-06 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.20 tolerated(0.12) benign(0.376) TCGA-HR-A2OH-06 1 17548845 17548845 C T PADI1 Silent p.F51F 0.23 TCGA-HR-A2OH-06 1 209974754 209974754 G A IRF6 Missense_Mutation p.A2V 0.15 deleterious(0.02) benign(0.367) TCGA-HR-A2OH-06 1 248112603 248112603 G A OR2L8 Nonsense_Mutation p.W148* 0.05 TCGA-HR-A2OH-06 1 248224427 248224427 G A OR2L3 Nonsense_Mutation p.W148* 0.18 TCGA-HR-A2OH-06 1 25883675 25883675 G A LDLRAP1 Missense_Mutation p.D126N 0.29 tolerated(0.08) benign(0.052) TCGA-HR-A2OH-06 1 35250960 35250960 C T GJB3 Silent p.I199I 0.17 TCGA-HR-A2OH-06 1 38158627 38158627 G A CDCA8 Missense_Mutation p.E49K 0.25 tolerated(0.08) benign(0.248) TCGA-HR-A2OH-06 1 42047174 42047174 G A HIVEP3 Missense_Mutation p.P1099S 0.26 benign(0.004) TCGA-HR-A2OH-06 1 8418587 8418587 G A RERE Silent p.P1336P 0.18 TCGA-HR-A2OH-06 20 41306677 41306677 G A PTPRT Missense_Mutation p.R328C 0.42 tolerated(0.06) probably_damaging(0.994) TCGA-HR-A2OH-06 20 43837350 43837350 G A SEMG1 3'UTR 0.52 TCGA-HR-A2OH-06 20 55052148 55052148 C G RTFDC1 Silent p.P122P 0.19 TCGA-HR-A2OH-06 21 39580553 39580553 G A DSCR10 RNA 0.22 TCGA-HR-A2OH-06 21 45993886 45993886 C T KRTAP10-4 Missense_Mutation p.S84F 0.16 deleterious(0.01) unknown(0) TCGA-HR-A2OH-06 22 23915401 23915401 C T IGLL1 3'UTR 0.16 TCGA-HR-A2OH-06 22 24056458 24056458 A G KB-1572G7.2 RNA 0.23 TCGA-HR-A2OH-06 22 36678522 36678522 G A MYH9 3'UTR 0.25 TCGA-HR-A2OH-06 22 39268240 39268240 G A CBX6 5'UTR 0.14 TCGA-HR-A2OH-06 2 141643882 141643882 G A LRP1B Silent p.I1263I 0.12 TCGA-HR-A2OH-06 2 168103971 168103971 A G XIRP2 Silent p.K2023K 0.25 TCGA-HR-A2OH-06 2 179604270 179604270 C T TTN Missense_Mutation p.E4564K 0.10 TCGA-HR-A2OH-06 2 179610473 179610473 T A TTN Intron 0.17 TCGA-HR-A2OH-06 2 201369606 201369606 G A KCTD18 Silent p.P79P 0.23 TCGA-HR-A2OH-06 2 21231015 21231015 C T APOB Missense_Mutation p.E2909K 0.26 benign(0.225) TCGA-HR-A2OH-06 2 228882578 228882578 G A SPHKAP Missense_Mutation p.P998S 0.19 deleterious(0) probably_damaging(1) TCGA-HR-A2OH-06 2 234343527 234343527 C T DGKD Missense_Mutation p.S189L 0.11 deleterious(0.04) probably_damaging(0.966) TCGA-HR-A2OH-06 2 242523990 242523990 G A THAP4 3'UTR 0.15 TCGA-HR-A2OH-06 2 24426483 24426483 C T ITSN2 3'UTR 0.20 TCGA-HR-A2OH-06 2 77745764 77745764 G A LRRTM4 Missense_Mutation p.P411S 0.24 tolerated(0.08) benign(0.023) TCGA-HR-A2OH-06 3 136342005 136342005 G A STAG1 Missense_Mutation p.R39C 0.25 deleterious(0) probably_damaging(0.973) TCGA-HR-A2OH-06 3 139087108 139087108 T C COPB2 Missense_Mutation p.E475G 0.36 deleterious(0.01) possibly_damaging(0.507) TCGA-HR-A2OH-06 3 14549195 14549195 G A GRIP2 RNA 0.13 TCGA-HR-A2OH-06 3 164905617 164905617 G A SLITRK3 3'UTR 0.50 TCGA-HR-A2OH-06 3 174974201 174974201 C T NAALADL2 Missense_Mutation p.A274V 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-HR-A2OH-06 3 184009215 184009215 G A ECE2 Silent p.V821V 0.31 TCGA-HR-A2OH-06 3 4825540 4825540 C A ITPR1 Missense_Mutation p.P2169H 0.36 deleterious(0) possibly_damaging(0.873) TCGA-HR-A2OH-06 4 10447404 10447404 T C ZNF518B Silent p.K183K 0.31 TCGA-HR-A2OH-06 4 118975649 118975649 T A NDST3 Missense_Mutation p.I195N 0.37 deleterious(0) possibly_damaging(0.812) TCGA-HR-A2OH-06 4 151773905 151773905 G A LRBA Missense_Mutation p.T986I 0.37 tolerated_low_confidence(0.38) benign(0) TCGA-HR-A2OH-06 4 36109304 36109304 G A ARAP2 Missense_Mutation p.H1390Y 0.34 deleterious(0) probably_damaging(0.98) TCGA-HR-A2OH-06 4 49030703 49030703 G A CWH43 Missense_Mutation p.E442K 0.30 tolerated(0.11) benign(0.089) TCGA-HR-A2OH-06 4 72620790 72620790 G A GC Missense_Mutation p.P376S 0.43 deleterious(0) probably_damaging(0.977) TCGA-HR-A2OH-06 4 77272262 77272262 G A CCDC158 Missense_Mutation p.P851S 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-HR-A2OH-06 5 1339007 1339007 G A CLPTM1L Silent p.S189S 0.17 TCGA-HR-A2OH-06 5 13719075 13719075 G A DNAH5 Missense_Mutation p.P4139S 0.26 possibly_damaging(0.876) TCGA-HR-A2OH-06 5 140215517 140215517 G A PCDHA7 Missense_Mutation p.V517M 0.08 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-HR-A2OH-06 5 140537517 140537517 G A PCDHB17 3'UTR 0.09 TCGA-HR-A2OH-06 5 150885593 150885593 G A FAT2 Missense_Mutation p.H4195Y 0.23 benign(0.11) TCGA-HR-A2OH-06 5 151239414 151239414 G A GLRA1 Silent p.F136F 0.11 TCGA-HR-A2OH-06 5 174868977 174868977 C T DRD1 Missense_Mutation p.E376K 0.23 tolerated(0.07) benign(0.027) TCGA-HR-A2OH-06 5 177674798 177674798 G A COL23A1 Missense_Mutation p.P416L 0.43 tolerated(0.17) benign(0.16) TCGA-HR-A2OH-06 6 11213611 11213611 G A NEDD9 Missense_Mutation p.P121L 0.24 deleterious(0) probably_damaging(0.992) TCGA-HR-A2OH-06 6 131927636 131927636 G A MED23 Silent p.S450S 0.18 TCGA-HR-A2OH-06 6 158532443 158532443 A T SERAC1 Silent p.T640T 0.11 TCGA-HR-A2OH-06 6 160564612 160564612 G A SLC22A1 Missense_Mutation p.R439Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-HR-A2OH-06 6 2685552 2685552 C T MYLK4 Missense_Mutation p.D175N 0.22 tolerated(0.35) benign(0.031) TCGA-HR-A2OH-06 6 44220932 44220932 A - HSP90AB1 Frame_Shift_Del p.I628Sfs*56 0.11 TCGA-HR-A2OH-06 6 51913356 51913356 G A PKHD1 Nonsense_Mutation p.R781* 0.13 TCGA-HR-A2OH-06 6 57246833 57246833 C T PRIM2 Missense_Mutation p.P187L 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-HR-A2OH-06 6 7572218 7572218 G A DSP Missense_Mutation p.E683K 0.15 probably_damaging(0.991) TCGA-HR-A2OH-06 6 7590437 7590437 C T SNRNP48 5'UTR 0.41 TCGA-HR-A2OH-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-HR-A2OH-06 7 143807135 143807135 C T OR2A2 Silent p.L154L 0.31 TCGA-HR-A2OH-06 7 149509388 149509388 C T SSPO RNA 0.23 TCGA-HR-A2OH-06 7 34724261 34724261 G A NPSR1 Missense_Mutation p.R82K 0.16 deleterious(0.02) benign(0.373) TCGA-HR-A2OH-06 7 5103551 5103551 G A RBAK Missense_Mutation p.G155E 0.27 tolerated(0.56) probably_damaging(1) TCGA-HR-A2OH-06 7 82585745 82585745 C T PCLO Silent p.E1508E 0.15 TCGA-HR-A2OH-06 7 86416374 86416374 G A GRM3 Missense_Mutation p.M422I 0.31 deleterious(0.02) possibly_damaging(0.676) TCGA-HR-A2OH-06 7 87178664 87178664 C T ABCB1 Silent p.K575K 0.31 TCGA-HR-A2OH-06 7 92132403 92132403 T G PEX1 Missense_Mutation p.Q726H 0.29 deleterious(0.02) possibly_damaging(0.519) TCGA-HR-A2OH-06 7 99042437 99042437 C T CPSF4 Silent p.F43F 0.16 TCGA-HR-A2OH-06 8 104427664 104427664 G A DCAF13 Missense_Mutation p.R149K 0.31 deleterious_low_confidence(0.03) benign(0.003) TCGA-HR-A2OH-06 8 139601587 139601587 C T COL22A1 Missense_Mutation p.G1597E 0.16 unknown(0) TCGA-HR-A2OH-06 8 139601588 139601588 C T COL22A1 Missense_Mutation p.G1597R 0.15 unknown(0) TCGA-HR-A2OH-06 8 21926979 21926979 C T DMTN Missense_Mutation p.P115L 0.16 tolerated(0.66) benign(0.007) TCGA-HR-A2OH-06 8 28574362 28574362 C T EXTL3 Silent p.S262S 0.10 TCGA-HR-A2OH-06 8 41467308 41467308 G T AGPAT6 Nonsense_Mutation p.E124* 0.18 TCGA-HR-A2OH-06 8 65291816 65291816 G A LINC00966 Intron 0.28 TCGA-HR-A2OH-06 8 87560537 87560537 G A CPNE3 Silent p.V296V 0.19 TCGA-HR-A2OH-06 9 130117744 130117744 A G GARNL3 Missense_Mutation p.Y643C 0.12 deleterious(0) probably_damaging(1) TCGA-HR-A2OH-06 9 133569166 133569166 C T EXOSC2 5'UTR 0.17 TCGA-HR-A2OH-06 9 4118392 4118392 C T GLIS3 Silent p.P362P 0.33 TCGA-HR-A2OH-06 X 130678175 130678175 G A OR13H1 Missense_Mutation p.G43E 0.32 tolerated(0.24) possibly_damaging(0.558) TCGA-HR-A2OH-06 X 18221737 18221737 C T BEND2 Missense_Mutation p.R264Q 0.24 tolerated(0.8) benign(0) TCGA-HR-A5NC-01 10 53227489 53227489 A T PRKG1 Missense_Mutation p.K162M 0.68 tolerated(0.13) possibly_damaging(0.555) TCGA-HR-A5NC-01 10 70992631 70992631 C T HKDC1 Missense_Mutation p.P113L 0.57 tolerated(0.29) benign(0.118) TCGA-HR-A5NC-01 11 100998711 100998711 G T PGR Missense_Mutation p.P364Q 0.30 tolerated_low_confidence(0.17) benign(0.099) TCGA-HR-A5NC-01 11 118425791 118425791 G T IFT46 Missense_Mutation p.P141T 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-HR-A5NC-01 11 119998174 119998174 C T TRIM29 Missense_Mutation p.R335Q 0.37 tolerated(0.14) probably_damaging(0.973) TCGA-HR-A5NC-01 12 13715915 13715915 C T GRIN2B Silent p.P1419P 0.44 TCGA-HR-A5NC-01 12 402286 402286 G A KDM5A Missense_Mutation p.S1502L 0.22 tolerated(0.37) possibly_damaging(0.879) TCGA-HR-A5NC-01 12 5674726 5674726 G A ANO2 Nonsense_Mutation p.Q909* 0.53 TCGA-HR-A5NC-01 12 6560543 6560543 T C CD27 Silent p.P256P 0.46 TCGA-HR-A5NC-01 14 102695480 102695480 G A MOK 3'UTR 0.27 TCGA-HR-A5NC-01 14 24535801 24535801 A G LRRC16B Silent p.P1206P 0.34 TCGA-HR-A5NC-01 14 25075943 25075943 C A GZMH Missense_Mutation p.G203W 0.28 deleterious(0) probably_damaging(1) TCGA-HR-A5NC-01 15 24922502 24922502 C A NPAP1 Missense_Mutation p.D496E 0.32 deleterious(0.01) benign(0.257) TCGA-HR-A5NC-01 15 25328645 25328645 C T SNORD116-18 5'Flank 0.29 TCGA-HR-A5NC-01 15 43910253 43910253 C T STRC Silent p.Q122Q 0.27 TCGA-HR-A5NC-01 15 89074333 89074333 G A DET1 Missense_Mutation p.R213C 0.37 tolerated(0.18) possibly_damaging(0.846) TCGA-HR-A5NC-01 15 89415313 89415313 C A ACAN Silent p.P2395P 0.35 TCGA-HR-A5NC-01 15 94899426 94899426 G A MCTP2 Missense_Mutation p.G356R 0.38 deleterious(0) probably_damaging(0.934) TCGA-HR-A5NC-01 16 14041718 14041718 C T ERCC4 Silent p.P755P 0.38 TCGA-HR-A5NC-01 16 21014449 21014449 C T DNAH3 Missense_Mutation p.E2035K 0.33 tolerated(0.56) benign(0.004) TCGA-HR-A5NC-01 16 2373659 2373659 G A ABCA3 Missense_Mutation p.R160W 0.54 deleterious(0.02) possibly_damaging(0.773) TCGA-HR-A5NC-01 16 50745009 50745009 C T NOD2 Missense_Mutation p.S396F 0.43 deleterious(0.02) probably_damaging(0.932) TCGA-HR-A5NC-01 16 55690434 55690434 G C SLC6A2 5'Flank 0.53 TCGA-HR-A5NC-01 16 71101262 71101262 T C HYDIN Missense_Mutation p.Y669C 0.31 probably_damaging(0.995) TCGA-HR-A5NC-01 16 81954820 81954820 C T PLCG2 Silent p.S751S 0.20 TCGA-HR-A5NC-01 17 33507607 33507607 C T UNC45B Missense_Mutation p.P764L 0.42 deleterious(0) benign(0.38) TCGA-HR-A5NC-01 17 49708805 49708805 C T CA10 3'UTR 0.25 TCGA-HR-A5NC-01 17 61988510 61988510 G A CSHL1 Intron 0.39 TCGA-HR-A5NC-01 17 71335011 71335011 G A SDK2 Silent p.I2078I 0.47 TCGA-HR-A5NC-01 17 72700895 72700895 G A CD300LF Missense_Mutation p.S35F 0.36 tolerated(0.08) possibly_damaging(0.86) TCGA-HR-A5NC-01 19 15224675 15224675 C T SYDE1 Silent p.F703F 0.42 TCGA-HR-A5NC-01 19 18118991 18118991 C T ARRDC2 5'UTR 0.43 TCGA-HR-A5NC-01 19 23159564 23159564 T A ZNF728 Missense_Mutation p.K192I 0.38 deleterious(0.02) probably_damaging(0.917) TCGA-HR-A5NC-01 19 40421527 40421527 C T FCGBP Silent p.S798S 0.38 TCGA-HR-A5NC-01 19 4847814 4847814 G A PLIN3 Silent p.S241S 0.53 TCGA-HR-A5NC-01 19 53086563 53086563 G A ZNF701 Silent p.K483K 0.30 TCGA-HR-A5NC-01 1 1326205 1326205 G A CCNL2 Missense_Mutation p.R234W 0.05 deleterious(0) probably_damaging(1) TCGA-HR-A5NC-01 1 147380172 147380172 C T GJA8 Silent p.F30F 0.35 TCGA-HR-A5NC-01 1 152733053 152733053 C T KPRP Missense_Mutation p.S330F 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-HR-A5NC-01 1 161494559 161494559 C T HSPA6 Silent p.N37N 0.25 TCGA-HR-A5NC-01 1 169272398 169272398 G A NME7 Missense_Mutation p.S142L 0.33 tolerated(0.09) benign(0.014) TCGA-HR-A5NC-01 1 196695708 196695708 C T CFH Missense_Mutation p.P661L 0.36 tolerated(0.08) benign(0.011) TCGA-HR-A5NC-01 1 32122006 32122006 G A COL16A1 Missense_Mutation p.P1366S 0.50 unknown(0) TCGA-HR-A5NC-01 1 36553041 36553041 C T TEKT2 Missense_Mutation p.T286I 0.62 tolerated(0.08) possibly_damaging(0.521) TCGA-HR-A5NC-01 1 82409005 82409005 C T LPHN2 Silent p.Y250Y 0.58 TCGA-HR-A5NC-01 20 1162120 1162120 G A TMEM74B Missense_Mutation p.P48L 0.32 deleterious(0.01) benign(0.116) TCGA-HR-A5NC-01 20 31611181 31611181 C T BPIFB2 Nonsense_Mutation p.Q457* 0.48 TCGA-HR-A5NC-01 20 47991003 47991003 G T KCNB1 Missense_Mutation p.P365Q 0.22 deleterious(0) probably_damaging(1) TCGA-HR-A5NC-01 21 32119308 32119308 T C KRTAP21-2 Silent p.R71R 0.41 TCGA-HR-A5NC-01 21 34922826 34922826 C T SON Missense_Mutation p.P430L 0.48 possibly_damaging(0.713) TCGA-HR-A5NC-01 21 45773616 45773616 G A TRPM2 Silent p.S11S 0.37 TCGA-HR-A5NC-01 22 29966428 29966428 G A NIPSNAP1 Silent p.S64S 0.26 TCGA-HR-A5NC-01 2 132273233 132273233 T C AC093838.4 RNA 0.33 TCGA-HR-A5NC-01 2 136362410 136362410 T C R3HDM1 5'UTR 0.36 TCGA-HR-A5NC-01 2 168103229 168103229 G A XIRP2 Missense_Mutation p.G1776E 0.38 benign(0.004) TCGA-HR-A5NC-01 2 220379914 220379914 C T ASIC4 Silent p.R283R 0.41 TCGA-HR-A5NC-01 2 39212863 39212863 T C SOS1 3'UTR 0.33 TCGA-HR-A5NC-01 2 49381417 49381417 T A FSHR Missense_Mutation p.N47I 0.43 tolerated(0.05) benign(0.024) TCGA-HR-A5NC-01 3 121647898 121647898 C T SLC15A2 Missense_Mutation p.H471Y 0.68 tolerated(0.27) benign(0.004) TCGA-HR-A5NC-01 3 123452958 123452958 C A MYLK Missense_Mutation p.K295N 0.36 tolerated(0.07) benign(0.093) TCGA-HR-A5NC-01 3 123452999 123452999 C G MYLK Missense_Mutation p.E282Q 0.35 tolerated(0.44) benign(0.186) TCGA-HR-A5NC-01 3 126071186 126071186 G A KLF15 Missense_Mutation p.P194S 0.78 tolerated(0.54) benign(0.272) TCGA-HR-A5NC-01 3 195498643 195498643 C T MUC4 Silent p.Q4374Q 0.73 TCGA-HR-A5NC-01 4 164393915 164393915 T G TKTL2 Silent p.T324T 0.38 TCGA-HR-A5NC-01 4 60041 60041 C T ZNF595 Missense_Mutation p.P74L 0.05 tolerated_low_confidence(0.07) benign(0.006) TCGA-HR-A5NC-01 4 81967182 81967182 A C BMP3 Missense_Mutation p.T203P 0.41 deleterious(0) probably_damaging(1) TCGA-HR-A5NC-01 5 161128716 161128716 C A GABRA6 Missense_Mutation p.N433K 0.65 deleterious(0) probably_damaging(0.993) TCGA-HR-A5NC-01 5 179264797 179264797 C A C5orf45 Missense_Mutation p.R209M 0.54 tolerated(0.13) possibly_damaging(0.585) TCGA-HR-A5NC-01 5 6312515 6312515 C T CTD-2324F15.2 RNA 0.70 TCGA-HR-A5NC-01 5 70307110 70307110 C T NAIP Nonsense_Mutation p.W220* 0.38 TCGA-HR-A5NC-01 6 117641186 117641186 G A ROS1 Missense_Mutation p.P1929S 0.45 deleterious(0.01) benign(0.266) TCGA-HR-A5NC-01 6 168947843 168947843 G A SMOC2 Missense_Mutation p.E197K 0.38 tolerated(0.55) benign(0.312) TCGA-HR-A5NC-01 6 24718947 24718947 G A C6orf62 5'UTR 0.58 TCGA-HR-A5NC-01 7 120596205 120596205 T C ING3 Intron 0.38 TCGA-HR-A5NC-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-HR-A5NC-01 7 142423452 142423452 G A TRBV27 Silent p.K36K 0.31 TCGA-HR-A5NC-01 7 150554726 150554726 G A AOC1 Missense_Mutation p.D390N 0.38 tolerated(0.07) probably_damaging(0.967) TCGA-HR-A5NC-01 7 2998174 2998174 G A CARD11 5'UTR 0.36 TCGA-HR-A5NC-01 7 43906529 43906529 G A MRPS24 Silent p.F91F 0.40 TCGA-HR-A5NC-01 7 98506526 98506526 C T TRRAP Missense_Mutation p.R431C 0.27 benign(0.021) TCGA-HR-A5NC-01 7 99918529 99918529 G A SPDYE3 3'UTR 0.31 TCGA-HR-A5NC-01 8 10470299 10470299 G A RP1L1 Silent p.L437L 0.38 TCGA-HR-A5NC-01 8 142506592 142506592 G A MROH5 5'UTR 0.19 TCGA-HR-A5NC-01 8 143996645 143996645 G A CYP11B2 Missense_Mutation p.R138C 0.53 deleterious(0.01) benign(0.219) TCGA-HR-A5NC-01 8 145758696 145758696 G A ARHGAP39 Missense_Mutation p.P901L 0.24 deleterious(0) possibly_damaging(0.637) TCGA-HR-A5NC-01 8 19816858 19816858 C T LPL Missense_Mutation p.T369I 0.26 deleterious(0.02) benign(0.261) TCGA-HR-A5NC-01 8 38834229 38834229 G T HTRA4 Missense_Mutation p.D248Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-HR-A5NC-01 8 87151753 87151753 G A ATP6V0D2 Missense_Mutation p.E124K 0.28 deleterious(0.03) possibly_damaging(0.71) TCGA-HR-A5NC-01 8 94746742 94746742 C T RBM12B Missense_Mutation p.E633K 0.44 tolerated_low_confidence(0.21) benign(0.019) TCGA-HR-A5NC-01 X 106224576 106224576 C T MORC4 Missense_Mutation p.R269K 0.61 tolerated(0.05) possibly_damaging(0.562) TCGA-HR-A5NC-01 X 114419060 114419060 G T LRCH2 Missense_Mutation p.L179I 0.77 deleterious(0) probably_damaging(0.997) TCGA-HR-A5NC-01 X 152801865 152801865 G A ATP2B3 Missense_Mutation p.G54R 0.80 deleterious(0) probably_damaging(0.934) TCGA-HR-A5NC-01 X 71788680 71788680 A G HDAC8 Silent p.D73D 0.13 TCGA-IH-A3EA-01 10 102738691 102738691 G A SEMA4G Silent p.T243T 0.32 TCGA-IH-A3EA-01 10 102738692 102738692 G A SEMA4G Missense_Mutation p.E244K 0.36 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 10 103898686 103898686 C T PPRC1 Silent p.I180I 0.42 TCGA-IH-A3EA-01 10 104242787 104242787 G A ACTR1A Missense_Mutation p.P244L 0.34 deleterious(0) probably_damaging(0.985) TCGA-IH-A3EA-01 10 104378922 104378922 C T SUFU Intron 0.29 TCGA-IH-A3EA-01 10 105048127 105048127 G A INA Missense_Mutation p.E401K 0.34 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 10 106121871 106121871 G A CCDC147 Missense_Mutation p.V128M 0.22 tolerated(0.05) benign(0.037) TCGA-IH-A3EA-01 10 106121872 106121872 T G CCDC147 Missense_Mutation p.V128G 0.23 tolerated(0.05) benign(0.138) TCGA-IH-A3EA-01 10 106974288 106974288 C T SORCS3 Missense_Mutation p.R822W 0.36 deleterious(0) possibly_damaging(0.677) TCGA-IH-A3EA-01 10 107006984 107006984 C T SORCS3 Silent p.F1000F 0.14 TCGA-IH-A3EA-01 10 115343993 115343993 C T HABP2 Missense_Mutation p.P442S 0.27 deleterious(0.05) possibly_damaging(0.483) TCGA-IH-A3EA-01 10 115535566 115535566 C T PLEKHS1 Silent p.F324F 0.46 TCGA-IH-A3EA-01 10 11789354 11789354 C T ECHDC3 Silent p.I59I 0.40 TCGA-IH-A3EA-01 10 118215301 118215301 G A PNLIPRP3 Missense_Mutation p.G175E 0.30 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 10 123842262 123842262 G A TACC2 Missense_Mutation p.D83N 0.33 benign(0.044) TCGA-IH-A3EA-01 10 124008183 124008183 C T TACC2 Silent p.V2806V 0.38 TCGA-IH-A3EA-01 10 124391389 124391389 C T DMBT1 Missense_Mutation p.P1993L 0.37 deleterious(0.04) benign(0.085) TCGA-IH-A3EA-01 10 124395567 124395567 C T DMBT1 Silent p.S2074S 0.25 TCGA-IH-A3EA-01 10 124459229 124459229 C T C10orf120 Silent p.K26K 0.33 TCGA-IH-A3EA-01 10 125622205 125622205 G A CPXM2 Silent p.I146I 0.30 TCGA-IH-A3EA-01 10 127753391 127753391 G C ADAM12 Silent p.V534V 0.21 TCGA-IH-A3EA-01 10 129682000 129682000 G A CLRN3 Silent p.F123F 0.33 TCGA-IH-A3EA-01 10 133930898 133930898 G A JAKMIP3 Silent p.K151K 0.36 TCGA-IH-A3EA-01 10 133961522 133961522 G A JAKMIP3 Missense_Mutation p.E606K 0.35 deleterious(0) probably_damaging(0.995) TCGA-IH-A3EA-01 10 134671205 134671205 C T TTC40 Silent p.E1821E 0.43 TCGA-IH-A3EA-01 10 135012305 135012305 G A KNDC1 Missense_Mutation p.A765T 0.25 tolerated(0.56) benign(0.007) TCGA-IH-A3EA-01 10 135440175 135440175 G A FRG2B Silent p.F24F 0.08 TCGA-IH-A3EA-01 10 14564008 14564008 G A FAM107B Missense_Mutation p.P222S 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-IH-A3EA-01 10 15120505 15120505 G A ACBD7 3'UTR 0.32 TCGA-IH-A3EA-01 10 15255111 15255111 C T FAM171A1 Missense_Mutation p.G826S 0.31 tolerated(0.34) benign(0.033) TCGA-IH-A3EA-01 10 17110191 17110191 C T CUBN Nonsense_Mutation p.W960* 0.32 TCGA-IH-A3EA-01 10 20506484 20506484 C T PLXDC2 Missense_Mutation p.P418S 0.31 tolerated(0.45) possibly_damaging(0.46) TCGA-IH-A3EA-01 10 21169793 21169793 G A NEBL Missense_Mutation p.S137L 0.36 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 10 21309087 21309087 C T NEBL Missense_Mutation p.E36K 0.27 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 10 21414932 21414932 G A C10orf113 Silent p.F96F 0.33 TCGA-IH-A3EA-01 10 26463416 26463416 A G MYO3A Missense_Mutation p.K1408R 0.31 tolerated_low_confidence(0.56) benign(0) TCGA-IH-A3EA-01 10 26513530 26513530 G A GAD2 Missense_Mutation p.R225K 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-IH-A3EA-01 10 26589877 26589877 G A GAD2 Missense_Mutation p.G582E 0.37 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 10 28225719 28225719 C T ARMC4 Missense_Mutation p.E730K 0.32 tolerated(0.14) benign(0.279) TCGA-IH-A3EA-01 10 28233882 28233882 G A ARMC4 Nonsense_Mutation p.Q466* 0.30 TCGA-IH-A3EA-01 10 28345511 28345511 C T MPP7 Silent p.V483V 0.33 TCGA-IH-A3EA-01 10 30658047 30658047 C T AL161651.1 5'Flank 0.33 TCGA-IH-A3EA-01 10 32197535 32197535 C T ARHGAP12 Silent p.Q83Q 0.24 TCGA-IH-A3EA-01 10 33136833 33136833 G A C10ORF68 Missense_Mutation p.R497K 0.39 tolerated(1) benign(0.009) TCGA-IH-A3EA-01 10 37419171 37419171 G A ANKRD30A Silent p.L69L 0.31 TCGA-IH-A3EA-01 10 37520412 37520412 G A ANKRD30A 3'UTR 0.28 TCGA-IH-A3EA-01 10 42831646 42831646 G A RP11-313J2.1 RNA 0.21 TCGA-IH-A3EA-01 10 42965547 42965547 G C CCNYL2 RNA 0.27 TCGA-IH-A3EA-01 10 45602072 45602072 G A RSU1P2 RNA 0.42 TCGA-IH-A3EA-01 10 48390545 48390545 C T RBP3 Silent p.E111E 0.26 TCGA-IH-A3EA-01 10 48413594 48413594 T A GDF2 Missense_Mutation p.E425V 0.35 deleterious(0) probably_damaging(0.983) TCGA-IH-A3EA-01 10 48414348 48414348 C T GDF2 Missense_Mutation p.D174N 0.30 tolerated(0.08) possibly_damaging(0.679) TCGA-IH-A3EA-01 10 50256544 50256544 G A VSTM4 Missense_Mutation p.P252S 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-IH-A3EA-01 10 50946101 50946101 G A OGDHL Silent p.F803F 0.38 TCGA-IH-A3EA-01 10 54528095 54528095 G A MBL2 Silent p.F183F 0.32 TCGA-IH-A3EA-01 10 55581809 55581809 C T PCDH15 Missense_Mutation p.E1895K 0.37 deleterious_low_confidence(0) unknown(0) TCGA-IH-A3EA-01 10 55587279 55587279 C T PCDH15 Missense_Mutation p.R1414Q 0.24 deleterious(0.03) benign(0.298) TCGA-IH-A3EA-01 10 55755361 55755361 G A PCDH15 Intron 0.31 TCGA-IH-A3EA-01 10 61832162 61832162 G A ANK3 Missense_Mutation p.S2826F 0.32 benign(0.135) TCGA-IH-A3EA-01 10 61844939 61844939 G A ANK3 Missense_Mutation p.S1274F 0.29 probably_damaging(0.998) TCGA-IH-A3EA-01 10 61900220 61900220 A C ANK3 Intron 0.29 TCGA-IH-A3EA-01 10 61946470 61946470 T C ANK3 Intron 0.20 TCGA-IH-A3EA-01 10 69750933 69750933 G A HERC4 Missense_Mutation p.S432F 0.33 deleterious(0) probably_damaging(0.973) TCGA-IH-A3EA-01 10 70863851 70863851 G A SRGN Missense_Mutation p.G151E 0.36 tolerated(1) benign(0.315) TCGA-IH-A3EA-01 10 70863890 70863890 C T SRGN 3'UTR 0.30 TCGA-IH-A3EA-01 10 72462070 72462070 G A ADAMTS14 Silent p.A175A 0.35 TCGA-IH-A3EA-01 10 75072263 75072263 C T TTC18 Missense_Mutation p.D421N 0.33 deleterious(0.02) possibly_damaging(0.86) TCGA-IH-A3EA-01 10 75435589 75435589 C T AGAP5 Missense_Mutation p.G277R 0.32 deleterious(0.02) benign(0.3) TCGA-IH-A3EA-01 10 78944663 78944663 G A KCNMA1 Missense_Mutation p.S205F 0.29 tolerated(0.08) benign(0.012) TCGA-IH-A3EA-01 10 79800402 79800402 T C RPS24 Intron 0.41 TCGA-IH-A3EA-01 10 85984133 85984133 G A LRIT2 Missense_Mutation p.S283F 0.29 deleterious(0) benign(0.393) TCGA-IH-A3EA-01 10 85984695 85984695 G A LRIT2 Silent p.L96L 0.39 TCGA-IH-A3EA-01 10 85997394 85997394 G A LRIT1 Silent p.I57I 0.43 TCGA-IH-A3EA-01 10 87614357 87614357 G A GRID1 Missense_Mutation p.L377F 0.27 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 10 88717214 88717214 G A MMRN2 Missense_Mutation p.L29F 0.38 tolerated(1) benign(0) TCGA-IH-A3EA-01 10 88769382 88769382 C T RP11-96C23.10 3'Flank 0.41 TCGA-IH-A3EA-01 10 89692885 89692886 - TG PTEN Frame_Shift_Ins p.K125Vfs*10 0.31 TCGA-IH-A3EA-01 10 90499756 90499756 C T LIPK Missense_Mutation p.R274C 0.41 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 10 92654570 92654570 C T RPP30 Silent p.S157S 0.31 TCGA-IH-A3EA-01 10 96534825 96534825 T G CYP2C19 Missense_Mutation p.I60S 0.36 tolerated(0.68) benign(0.002) TCGA-IH-A3EA-01 10 96534881 96534881 G A CYP2C19 Missense_Mutation p.G79R 0.28 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 10 96534946 96534946 C T CYP2C19 Silent p.F100F 0.32 TCGA-IH-A3EA-01 10 98155082 98155082 C T TLL2 Missense_Mutation p.E530K 0.36 tolerated(0.19) benign(0.332) TCGA-IH-A3EA-01 10 99343513 99343513 C T ANKRD2 3'UTR 0.52 TCGA-IH-A3EA-01 10 99343514 99343514 C T ANKRD2 3'UTR 0.52 TCGA-IH-A3EA-01 11 100126624 100126624 C T CNTN5 Missense_Mutation p.S713F 0.34 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 11 101323826 101323826 C T TRPC6 Missense_Mutation p.E886K 0.35 deleterious(0.02) possibly_damaging(0.826) TCGA-IH-A3EA-01 11 102649475 102649475 C T MMP10 Missense_Mutation p.G168R 0.47 tolerated(0.24) probably_damaging(0.99) TCGA-IH-A3EA-01 11 1029076 1029076 G A MUC6 Silent p.S450S 0.26 TCGA-IH-A3EA-01 11 103182757 103182757 C T DYNC2H1 Missense_Mutation p.P3889S 0.29 probably_damaging(1) TCGA-IH-A3EA-01 11 103908522 103908522 A G DDI1 Silent p.Q324Q 0.30 TCGA-IH-A3EA-01 11 105009551 105009551 C T CARD18 Missense_Mutation p.G88S 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-IH-A3EA-01 11 10580653 10580653 C T LYVE1 3'UTR 0.28 TCGA-IH-A3EA-01 11 106558339 106558339 G A GUCY1A2 Missense_Mutation p.S743L 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-IH-A3EA-01 11 111938533 111938533 T C PIH1D2 3'UTR 0.31 TCGA-IH-A3EA-01 11 112050169 112050169 G A BCO2 Missense_Mutation p.R86Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-IH-A3EA-01 11 113934819 113934819 G A ZBTB16 Missense_Mutation p.G266E 0.26 tolerated(0.4) benign(0.004) TCGA-IH-A3EA-01 11 117982457 117982457 C T TMPRSS4 Silent p.A195A 0.32 TCGA-IH-A3EA-01 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.28 tolerated(0.16) benign(0.04) TCGA-IH-A3EA-01 11 118498710 118498710 C T PHLDB1 Missense_Mutation p.P391S 0.31 tolerated(0.13) benign(0.013) TCGA-IH-A3EA-01 11 119002249 119002249 C T HINFP Missense_Mutation p.S139F 0.28 deleterious(0.01) benign(0.163) TCGA-IH-A3EA-01 11 119213613 119213613 C T MFRP Missense_Mutation p.A409T 0.35 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 11 120180188 120180188 G A POU2F3 Missense_Mutation p.E323K 0.42 deleterious(0) possibly_damaging(0.901) TCGA-IH-A3EA-01 11 120833254 120833254 C T GRIK4 Silent p.I710I 0.36 TCGA-IH-A3EA-01 11 121986267 121986267 C T BLID 3'UTR 0.33 TCGA-IH-A3EA-01 11 123755341 123755341 C T TMEM225 Missense_Mutation p.D62N 0.27 tolerated(0.79) probably_damaging(0.945) TCGA-IH-A3EA-01 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-IH-A3EA-01 11 123814278 123814278 G A OR6T1 Missense_Mutation p.H90Y 0.27 tolerated(0.08) benign(0.002) TCGA-IH-A3EA-01 11 124135346 124135346 G A OR8G5 Silent p.V208V 0.29 TCGA-IH-A3EA-01 11 124180586 124180586 G A OR8D1 Missense_Mutation p.P26L 0.35 deleterious(0.03) benign(0.025) TCGA-IH-A3EA-01 11 124189191 124189191 C T OR8D2 Silent p.L301L 0.32 TCGA-IH-A3EA-01 11 124190000 124190000 G A OR8D2 Missense_Mutation p.L32F 0.42 deleterious(0.01) benign(0.028) TCGA-IH-A3EA-01 11 124267095 124267095 T C OR8B3 Silent p.L51L 0.43 TCGA-IH-A3EA-01 11 124412741 124412741 C T OR8B12 Silent p.G270G 0.47 TCGA-IH-A3EA-01 11 124440531 124440531 C T OR8A1 Silent p.L189L 0.36 TCGA-IH-A3EA-01 11 12785735 12785735 C T TEAD1 5'UTR 0.26 TCGA-IH-A3EA-01 11 128782030 128782030 G A KCNJ5 Missense_Mutation p.E288K 0.43 tolerated(0.08) probably_damaging(0.935) TCGA-IH-A3EA-01 11 130059738 130059738 C T ST14 Missense_Mutation p.P182L 0.34 tolerated(0.19) benign(0.209) TCGA-IH-A3EA-01 11 133789947 133789947 G A IGSF9B Missense_Mutation p.R1225C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IH-A3EA-01 11 134147705 134147705 C T GLB1L3 Silent p.F87F 0.28 TCGA-IH-A3EA-01 11 14284316 14284316 G A RP11-21L19.1 3'Flank 0.31 TCGA-IH-A3EA-01 11 1642978 1642978 C T KRTAP5-4 Missense_Mutation p.G116S 0.25 tolerated_low_confidence(0.32) unknown(0) TCGA-IH-A3EA-01 11 1642979 1642979 C T KRTAP5-4 Silent p.G115G 0.25 TCGA-IH-A3EA-01 11 16838865 16838865 G A PLEKHA7 Missense_Mutation p.P450S 0.46 tolerated(0.32) benign(0.071) TCGA-IH-A3EA-01 11 17483217 17483217 G A ABCC8 Silent p.I245I 0.36 TCGA-IH-A3EA-01 11 18194839 18194839 G A MRGPRX4 Silent p.L12L 0.40 TCGA-IH-A3EA-01 11 18288502 18288502 C T SAA1 Missense_Mutation p.S23L 0.35 deleterious(0.04) benign(0.225) TCGA-IH-A3EA-01 11 18291469 18291469 G A SAA1 3'UTR 0.38 TCGA-IH-A3EA-01 11 1874388 1874388 C T LSP1 Missense_Mutation p.S5L 0.33 tolerated_low_confidence(0.17) benign(0.004) TCGA-IH-A3EA-01 11 19077817 19077817 G A MRGPRX2 Silent p.L45L 0.47 TCGA-IH-A3EA-01 11 20065771 20065771 G A NAV2 Missense_Mutation p.R1074K 0.32 tolerated(0.43) probably_damaging(0.983) TCGA-IH-A3EA-01 11 213384 213384 A T RIC8A Missense_Mutation p.M487L 0.50 tolerated(0.18) benign(0.018) TCGA-IH-A3EA-01 11 26587205 26587205 G A MUC15 Silent p.L94L 0.43 TCGA-IH-A3EA-01 11 30938428 30938428 C T DCDC1 Silent p.Q1147Q 0.32 TCGA-IH-A3EA-01 11 32413596 32413596 G A WT1 Nonsense_Mutation p.Q452* 0.41 TCGA-IH-A3EA-01 11 32635800 32635800 G A CCDC73 Silent p.V688V 0.27 TCGA-IH-A3EA-01 11 418940 418940 C T ANO9 Missense_Mutation p.D662N 0.36 tolerated(0.06) probably_damaging(0.914) TCGA-IH-A3EA-01 11 43284481 43284481 C T HNRNPKP3 RNA 0.27 TCGA-IH-A3EA-01 11 4471506 4471506 G A OR52K2 Missense_Mutation p.D313N 0.48 tolerated(0.59) benign(0.001) TCGA-IH-A3EA-01 11 4567157 4567157 C T OR52M1 Missense_Mutation p.S246F 0.30 deleterious(0) probably_damaging(0.995) TCGA-IH-A3EA-01 11 45935372 45935372 G A PEX16 Silent p.S295S 0.24 TCGA-IH-A3EA-01 11 4609094 4609094 G A OR52I2 Silent p.%3D 0.32 TCGA-IH-A3EA-01 11 4616188 4616188 G A OR52I1 Missense_Mutation p.G307E 0.44 tolerated(0.09) benign(0.027) TCGA-IH-A3EA-01 11 4621703 4621703 G A TRIM68 Missense_Mutation p.R421C 0.36 deleterious(0.02) benign(0.135) TCGA-IH-A3EA-01 11 47364270 47364270 G A MYBPC3 Missense_Mutation p.R495W 0.38 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 11 47364271 47364271 G A MYBPC3 Silent p.T494T 0.37 TCGA-IH-A3EA-01 11 48157688 48157688 C T PTPRJ Silent p.Y571Y 0.28 TCGA-IH-A3EA-01 11 4825340 4825340 G A OR52R1 Missense_Mutation p.H91Y 0.30 deleterious(0.01) benign(0.303) TCGA-IH-A3EA-01 11 4843639 4843639 G A OR51F2 Missense_Mutation p.E342K 0.18 tolerated_low_confidence(0.23) unknown(0) TCGA-IH-A3EA-01 11 49168236 49168236 C T FOLH1 3'UTR 0.36 TCGA-IH-A3EA-01 11 49197469 49197469 C T FOLH1 Missense_Mutation p.G321R 0.32 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 11 4936029 4936029 G A OR51G2 Missense_Mutation p.P289S 0.46 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 11 4936189 4936189 G T OR51G2 Silent p.S235S 0.43 TCGA-IH-A3EA-01 11 49597902 49597902 C T RP11-707M1.1 RNA 0.33 TCGA-IH-A3EA-01 11 5020494 5020494 C T OR51L1 Silent p.I94I 0.27 TCGA-IH-A3EA-01 11 5068609 5068609 C T OR52J3 Missense_Mutation p.P285L 0.36 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 11 51412371 51412371 C T OR4A5 Missense_Mutation p.E9K 0.35 deleterious_low_confidence(0.01) benign(0.323) TCGA-IH-A3EA-01 11 5153120 5153120 G A OR52A5 Silent p.F251F 0.36 TCGA-IH-A3EA-01 11 5274493 5274493 C T HBG2 3'UTR 0.28 TCGA-IH-A3EA-01 11 5373490 5373490 C T OR51B6 Silent p.V251V 0.34 TCGA-IH-A3EA-01 11 55038461 55038461 C T TRIM48 3'UTR 0.28 TCGA-IH-A3EA-01 11 55321881 55321881 C G OR4C15 Missense_Mutation p.F33L 0.27 deleterious_low_confidence(0.04) benign(0) TCGA-IH-A3EA-01 11 55322726 55322726 C T OR4C15 Missense_Mutation p.P315L 0.30 tolerated_low_confidence(0.13) possibly_damaging(0.605) TCGA-IH-A3EA-01 11 55541105 55541105 C T OR5D13 Silent p.F64F 0.43 TCGA-IH-A3EA-01 11 55541810 55541810 C T OR5D13 Silent p.I299I 0.23 TCGA-IH-A3EA-01 11 55587315 55587315 G A OR5D18 Silent p.V70V 0.29 TCGA-IH-A3EA-01 11 55595364 55595364 A C OR5L2 Missense_Mutation p.T224P 0.27 deleterious(0) probably_damaging(0.986) TCGA-IH-A3EA-01 11 55861129 55861129 G A OR8I2 Missense_Mutation p.G116R 0.38 deleterious(0) possibly_damaging(0.857) TCGA-IH-A3EA-01 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.32 TCGA-IH-A3EA-01 11 56043428 56043428 C T OR5T1 Missense_Mutation p.S105L 0.29 deleterious(0.02) benign(0.32) TCGA-IH-A3EA-01 11 56143515 56143515 G A OR8U1 Missense_Mutation p.G139E 0.20 tolerated(0.05) benign(0.392) TCGA-IH-A3EA-01 11 56344943 56344943 G A OR5M10 Silent p.F85F 0.31 TCGA-IH-A3EA-01 11 57003606 57003606 G A APLNR Silent p.F291F 0.47 TCGA-IH-A3EA-01 11 57069988 57069988 C T TNKS1BP1 Missense_Mutation p.R1543Q 0.32 tolerated(0.12) benign(0.007) TCGA-IH-A3EA-01 11 57261476 57261476 G A SLC43A1 Silent p.N287N 0.37 TCGA-IH-A3EA-01 11 58170735 58170735 C T OR5B3 Missense_Mutation p.D50N 0.42 deleterious_low_confidence(0.01) benign(0.157) TCGA-IH-A3EA-01 11 58206784 58206784 G A OR5B12 Missense_Mutation p.P281S 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IH-A3EA-01 11 58607110 58607110 C T GLYATL2 5'UTR 0.23 TCGA-IH-A3EA-01 11 58607111 58607111 C T GLYATL2 5'UTR 0.25 TCGA-IH-A3EA-01 11 5862225 5862225 C T OR52E6 Silent p.R301R 0.24 TCGA-IH-A3EA-01 11 6007810 6007810 G A OR52L1 Silent p.I117I 0.23 TCGA-IH-A3EA-01 11 60559761 60559761 G A MS4A10 Silent p.A109A 0.32 TCGA-IH-A3EA-01 11 60780970 60780970 G A CD6 Missense_Mutation p.G409E 0.32 deleterious(0) possibly_damaging(0.718) TCGA-IH-A3EA-01 11 60786732 60786732 C T CD6 Missense_Mutation p.P650L 0.28 tolerated(0.1) benign(0.006) TCGA-IH-A3EA-01 11 60786733 60786733 C T CD6 Silent p.P650P 0.30 TCGA-IH-A3EA-01 11 60893271 60893271 C T CD5 Missense_Mutation p.S483F 0.22 deleterious(0) probably_damaging(0.992) TCGA-IH-A3EA-01 11 61034971 61034971 G A VWCE Missense_Mutation p.P643L 0.31 tolerated(0.1) possibly_damaging(0.467) TCGA-IH-A3EA-01 11 61034972 61034972 G A VWCE Missense_Mutation p.P643S 0.32 deleterious(0.04) probably_damaging(0.968) TCGA-IH-A3EA-01 11 618054 618054 C T CDHR5 Missense_Mutation p.G673E 0.14 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 11 618055 618055 C T CDHR5 Missense_Mutation p.G673R 0.14 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 11 621573 621573 C T CDHR5 Missense_Mutation p.E166K 0.33 deleterious(0) probably_damaging(0.953) TCGA-IH-A3EA-01 11 62300757 62300757 G A AHNAK Missense_Mutation p.P378S 0.28 possibly_damaging(0.907) TCGA-IH-A3EA-01 11 62415655 62415655 G A INTS5 Missense_Mutation p.P633S 0.26 tolerated(0.22) benign(0.225) TCGA-IH-A3EA-01 11 62455746 62455746 G A LRRN4CL Missense_Mutation p.P79S 0.47 tolerated(0.09) possibly_damaging(0.454) TCGA-IH-A3EA-01 11 62752115 62752115 G A SLC22A6 Silent p.F16F 0.24 TCGA-IH-A3EA-01 11 63069934 63069934 C T SLC22A10 Missense_Mutation p.H402Y 0.25 tolerated(0.38) benign(0.009) TCGA-IH-A3EA-01 11 63141421 63141421 C T SLC22A9 Silent p.C239C 0.22 TCGA-IH-A3EA-01 11 63141422 63141422 C T SLC22A9 Missense_Mutation p.P240S 0.21 tolerated(0.31) benign(0.001) TCGA-IH-A3EA-01 11 63176271 63176271 C T SLC22A9 Silent p.F507F 0.29 TCGA-IH-A3EA-01 11 63326096 63326096 G A HRASLS2 Missense_Mutation p.S52F 0.30 deleterious(0) possibly_damaging(0.48) TCGA-IH-A3EA-01 11 65168331 65168331 C T FRMD8 Missense_Mutation p.S355F 0.44 deleterious(0.01) benign(0.093) TCGA-IH-A3EA-01 11 65266481 65266481 C T MALAT1 RNA 0.30 TCGA-IH-A3EA-01 11 65651878 65651878 G A FIBP Missense_Mutation p.S337F 0.33 deleterious(0.04) benign(0.048) TCGA-IH-A3EA-01 11 67225861 67225861 G A CABP4 Missense_Mutation p.G224E 0.25 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 11 67259723 67259723 C T PITPNM1 Silent p.A1172A 0.42 TCGA-IH-A3EA-01 11 67925374 67925374 C T SUV420H1 Missense_Mutation p.M813I 0.35 tolerated(0.21) benign(0.043) TCGA-IH-A3EA-01 11 68197143 68197143 C T LRP5 Silent p.L1246L 0.36 TCGA-IH-A3EA-01 11 6913034 6913034 C T OR2D2 Missense_Mutation p.G233E 0.38 deleterious(0) probably_damaging(0.956) TCGA-IH-A3EA-01 11 69487993 69487993 G A ORAOV1 Silent p.I49I 0.39 TCGA-IH-A3EA-01 11 70331460 70331460 C T SHANK2 Silent p.L1647L 0.40 TCGA-IH-A3EA-01 11 72945537 72945537 C T P2RY2 Silent p.F111F 0.44 TCGA-IH-A3EA-01 11 73809191 73809191 G A C2CD3 Nonsense_Mutation p.R948* 0.29 TCGA-IH-A3EA-01 11 74415665 74415665 C T CHRDL2 Missense_Mutation p.G206E 0.57 tolerated(0.22) benign(0.425) TCGA-IH-A3EA-01 11 76371693 76371693 G T LRRC32 Missense_Mutation p.S315Y 0.25 deleterious(0.04) possibly_damaging(0.781) TCGA-IH-A3EA-01 11 7847415 7847415 A C OR5P3 Nonsense_Mutation p.Y35* 0.22 TCGA-IH-A3EA-01 11 9172244 9172244 G A DENND5A Silent p.S863S 0.22 TCGA-IH-A3EA-01 11 92088221 92088221 G A FAT3 Silent p.G981G 0.25 TCGA-IH-A3EA-01 11 93127783 93127783 G A CCDC67 Missense_Mutation p.M400I 0.31 tolerated(0.26) benign(0.003) TCGA-IH-A3EA-01 11 94113360 94113360 C T GPR83 Silent p.G409G 0.37 TCGA-IH-A3EA-01 11 984707 984707 G C AP2A2 Missense_Mutation p.W256C 0.27 deleterious(0.03) probably_damaging(0.947) TCGA-IH-A3EA-01 11 99932104 99932104 C T CNTN5 Missense_Mutation p.R381C 0.34 deleterious(0) probably_damaging(0.987) TCGA-IH-A3EA-01 12 100206089 100206089 C T ANKS1B Silent p.K72K 0.40 TCGA-IH-A3EA-01 12 1005700 1005700 C T WNK1 Missense_Mutation p.A2016V 0.28 deleterious(0.03) benign(0.42) TCGA-IH-A3EA-01 12 101295532 101295532 C T ANO4 5'UTR 0.38 TCGA-IH-A3EA-01 12 101336209 101336209 C T ANO4 Nonsense_Mutation p.R83* 0.44 TCGA-IH-A3EA-01 12 101365135 101365135 G A ANO4 Missense_Mutation p.E135K 0.37 deleterious(0.01) benign(0.364) TCGA-IH-A3EA-01 12 10279948 10279948 C T CLEC7A Intron 0.37 TCGA-IH-A3EA-01 12 103695875 103695875 C T C12orf42 3'UTR 0.38 TCGA-IH-A3EA-01 12 104139016 104139016 G A STAB2 Missense_Mutation p.E2033K 0.22 tolerated(0.08) benign(0.019) TCGA-IH-A3EA-01 12 104458467 104458467 G A HCFC2 Silent p.E43E 0.25 TCGA-IH-A3EA-01 12 104458468 104458468 G A HCFC2 Missense_Mutation p.G44S 0.25 deleterious(0.02) benign(0.097) TCGA-IH-A3EA-01 12 104459995 104459995 T G HCFC2 Missense_Mutation p.C72G 0.38 deleterious(0.02) benign(0.001) TCGA-IH-A3EA-01 12 10600186 10600186 G A KLRC1 Missense_Mutation p.R179C 0.32 deleterious(0) possibly_damaging(0.887) TCGA-IH-A3EA-01 12 106821067 106821067 C T POLR3B Silent p.A398A 0.41 TCGA-IH-A3EA-01 12 110017717 110017717 C T MVK Missense_Mutation p.L113F 0.30 deleterious(0.01) benign(0.339) TCGA-IH-A3EA-01 12 110872956 110872956 C A ARPC3 3'UTR 0.43 TCGA-IH-A3EA-01 12 111856354 111856354 C T SH2B3 Silent p.F135F 0.29 TCGA-IH-A3EA-01 12 113722539 113722539 C T TPCN1 Silent p.S544S 0.36 TCGA-IH-A3EA-01 12 115117739 115117739 C T TBX3 Silent p.G232G 0.37 TCGA-IH-A3EA-01 12 117718657 117718657 A G NOS1 Missense_Mutation p.I466T 0.23 deleterious(0) probably_damaging(0.983) TCGA-IH-A3EA-01 12 117768283 117768283 C T NOS1 Missense_Mutation p.G198S 0.34 tolerated_low_confidence(0.06) benign(0.002) TCGA-IH-A3EA-01 12 118199214 118199214 G A KSR2 Silent p.S196S 0.41 TCGA-IH-A3EA-01 12 119866561 119866561 G A CCDC60 Missense_Mutation p.R55Q 0.18 tolerated(0.1) probably_damaging(0.917) TCGA-IH-A3EA-01 12 119954470 119954470 G A CCDC60 Missense_Mutation p.R309K 0.25 tolerated(0.79) benign(0.163) TCGA-IH-A3EA-01 12 120270644 120270644 G A CIT Silent p.L228L 0.44 TCGA-IH-A3EA-01 12 120509467 120509467 C T CCDC64 Silent p.S317S 0.38 TCGA-IH-A3EA-01 12 120567141 120567141 G A GCN1L1 Missense_Mutation p.A2610V 0.38 probably_damaging(0.998) TCGA-IH-A3EA-01 12 123200193 123200193 G A HCAR3 Silent p.N364N 0.29 TCGA-IH-A3EA-01 12 124283811 124283811 G A DNAH10 Missense_Mutation p.E610K 0.40 benign(0.012) TCGA-IH-A3EA-01 12 124819002 124819002 G A NCOR2 Silent p.A2191A 0.63 TCGA-IH-A3EA-01 12 124914223 124914223 G A NCOR2 Missense_Mutation p.S362F 0.25 unknown(0) TCGA-IH-A3EA-01 12 12815066 12815066 G A GPR19 Missense_Mutation p.S106F 0.37 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 12 130184942 130184942 C T TMEM132D Nonsense_Mutation p.W127* 0.18 TCGA-IH-A3EA-01 12 13102787 13102787 G A GPRC5D Missense_Mutation p.L178F 0.38 tolerated(0.09) possibly_damaging(0.452) TCGA-IH-A3EA-01 12 132466781 132466781 C T EP400 Missense_Mutation p.P563S 0.44 unknown(0) TCGA-IH-A3EA-01 12 132534888 132534888 C T EP400 Silent p.L2407L 0.37 TCGA-IH-A3EA-01 12 133233743 133233743 G A POLE Silent p.F1187F 0.41 TCGA-IH-A3EA-01 12 13720046 13720046 G A GRIN2B Silent p.I837I 0.39 TCGA-IH-A3EA-01 12 18719980 18719980 G A PIK3C2G Missense_Mutation p.E1293K 0.39 tolerated(0.29) benign(0.014) TCGA-IH-A3EA-01 12 18854660 18854660 C T PLCZ1 Silent p.K305K 0.29 TCGA-IH-A3EA-01 12 18854670 18854670 C T PLCZ1 Missense_Mutation p.G302E 0.27 tolerated(0.08) probably_damaging(0.988) TCGA-IH-A3EA-01 12 1967762 1967762 C T CACNA2D4 Silent p.G663G 0.18 TCGA-IH-A3EA-01 12 1993429 1993429 C T CACNA2D4 Nonsense_Mutation p.W444* 0.38 TCGA-IH-A3EA-01 12 21200013 21200013 C T SLCO1B7 Missense_Mutation p.L286F 0.14 tolerated(0.24) benign(0.045) TCGA-IH-A3EA-01 12 21355570 21355570 C T SLCO1B1 Silent p.F427F 0.33 TCGA-IH-A3EA-01 12 21918682 21918682 C T KCNJ8 Missense_Mutation p.G417E 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-IH-A3EA-01 12 25254170 25254170 G A LRMP Missense_Mutation p.R267K 0.41 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 12 27840387 27840387 C T PPFIBP1 Silent p.L779L 0.44 TCGA-IH-A3EA-01 12 2797695 2797695 C A CACNA1C Missense_Mutation p.P2004Q 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.452) TCGA-IH-A3EA-01 12 306005 306005 C T SLC6A12 Missense_Mutation p.M373I 0.27 deleterious(0) benign(0.159) TCGA-IH-A3EA-01 12 3129908 3129908 C T TEAD4 Missense_Mutation p.A231V 0.42 deleterious(0.04) probably_damaging(0.996) TCGA-IH-A3EA-01 12 40020057 40020057 C T C12orf40 5'UTR 0.42 TCGA-IH-A3EA-01 12 40757307 40757307 A G LRRK2 Missense_Mutation p.K2378E 0.31 deleterious(0.01) possibly_damaging(0.682) TCGA-IH-A3EA-01 12 43858458 43858458 C T ADAMTS20 Missense_Mutation p.R482Q 0.38 tolerated(0.11) benign(0.002) TCGA-IH-A3EA-01 12 46230691 46230691 C T ARID2 Missense_Mutation p.R314C 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-IH-A3EA-01 12 46244064 46244064 C T ARID2 Nonsense_Mutation p.Q720* 0.32 TCGA-IH-A3EA-01 12 46600951 46600951 C T SLC38A1 Missense_Mutation p.E184K 0.27 tolerated(0.12) benign(0.277) TCGA-IH-A3EA-01 12 47628852 47628852 C T PCED1B Silent p.I2I 0.36 TCGA-IH-A3EA-01 12 48596291 48596291 T C OR10AD1 Missense_Mutation p.N262S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-IH-A3EA-01 12 49937233 49937233 G A KCNH3 Missense_Mutation p.R252Q 0.46 tolerated(0.13) benign(0.008) TCGA-IH-A3EA-01 12 51213539 51213539 C T ATF1 Missense_Mutation p.L265F 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-IH-A3EA-01 12 51585513 51585513 G A POU6F1 Silent p.I142I 0.41 TCGA-IH-A3EA-01 12 51685634 51685634 G A BIN2 Missense_Mutation p.P419L 0.44 tolerated_low_confidence(0.16) probably_damaging(0.999) TCGA-IH-A3EA-01 12 51773085 51773085 G A GALNT6 Nonsense_Mutation p.R161* 0.71 TCGA-IH-A3EA-01 12 52714975 52714975 C T KRT83 Missense_Mutation p.G49S 0.31 tolerated(0.07) benign(0.089) TCGA-IH-A3EA-01 12 52827874 52827874 G A KRT75 Missense_Mutation p.S72F 0.34 deleterious(0) benign(0.086) TCGA-IH-A3EA-01 12 53188041 53188041 G A KRT3 Silent p.S240S 0.40 TCGA-IH-A3EA-01 12 53202469 53202469 C T KRT4 Splice_Site p.X333_splice 0.29 TCGA-IH-A3EA-01 12 53238373 53238373 C T KRT78 Silent p.K297K 0.36 TCGA-IH-A3EA-01 12 53293738 53293738 C T KRT8 Missense_Mutation p.E296K 0.27 tolerated(0.06) benign(0.02) TCGA-IH-A3EA-01 12 53495840 53495840 C T IGFBP6 Silent p.S204S 0.30 TCGA-IH-A3EA-01 12 53722955 53722955 C T SP7 Missense_Mutation p.D91N 0.37 deleterious(0.03) benign(0.073) TCGA-IH-A3EA-01 12 54794678 54794678 C T ITGA5 Silent p.T865T 0.24 TCGA-IH-A3EA-01 12 54798505 54798505 C T ITGA5 Missense_Mutation p.D467N 0.32 deleterious(0) probably_damaging(0.975) TCGA-IH-A3EA-01 12 55715062 55715062 C T OR6C1 Missense_Mutation p.P227S 0.26 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-IH-A3EA-01 12 55759074 55759074 C T OR6C75 Silent p.F60F 0.35 TCGA-IH-A3EA-01 12 55886880 55886880 C T OR6C68 Missense_Mutation p.S240F 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-IH-A3EA-01 12 55945174 55945174 C T OR6C4 Missense_Mutation p.T55I 0.33 deleterious_low_confidence(0.02) benign(0.001) TCGA-IH-A3EA-01 12 55945843 55945843 C T OR6C4 Missense_Mutation p.S278L 0.45 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-IH-A3EA-01 12 56230884 56230884 G A MMP19 Missense_Mutation p.P488L 0.34 tolerated_low_confidence(0.06) unknown(0) TCGA-IH-A3EA-01 12 56397910 56397910 C T SUOX Missense_Mutation p.S246F 0.24 deleterious(0) probably_damaging(0.994) TCGA-IH-A3EA-01 12 57007848 57007848 G A BAZ2A Missense_Mutation p.P271S 0.32 tolerated(0.05) probably_damaging(0.998) TCGA-IH-A3EA-01 12 58009282 58009282 C T ARHGEF25 Intron 0.32 TCGA-IH-A3EA-01 12 58016672 58016672 C T SLC26A10 Silent p.A298A 0.35 TCGA-IH-A3EA-01 12 62104118 62104118 G A FAM19A2 3'UTR 0.31 TCGA-IH-A3EA-01 12 62261172 62261172 C T FAM19A2 Missense_Mutation p.G12E 0.36 tolerated_low_confidence(0.21) benign(0.441) TCGA-IH-A3EA-01 12 66152432 66152432 C A RPSAP52 RNA 0.30 TCGA-IH-A3EA-01 12 66517682 66517682 C T LLPH Missense_Mutation p.E110K 0.26 tolerated(0.67) unknown(0) TCGA-IH-A3EA-01 12 69651668 69651668 C T CPSF6 Missense_Mutation p.P226L 0.36 tolerated(0.34) unknown(0) TCGA-IH-A3EA-01 12 70049344 70049344 C T BEST3 Nonsense_Mutation p.W450* 0.32 TCGA-IH-A3EA-01 12 70049412 70049412 C T BEST3 Missense_Mutation p.D428N 0.41 tolerated(0.13) benign(0.01) TCGA-IH-A3EA-01 12 70735934 70735934 G A CNOT2 Missense_Mutation p.R409Q 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-IH-A3EA-01 12 70956752 70956752 C T PTPRB Missense_Mutation p.R1347K 0.33 tolerated(0.09) benign(0.395) TCGA-IH-A3EA-01 12 70980795 70980795 C T PTPRB Missense_Mutation p.G768E 0.24 deleterious(0) probably_damaging(0.994) TCGA-IH-A3EA-01 12 70986244 70986244 C T PTPRB Missense_Mutation p.G533E 0.45 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 12 71029727 71029727 T A PTPRB Nonsense_Mutation p.K59* 0.37 TCGA-IH-A3EA-01 12 7177809 7177809 C T C1S Missense_Mutation p.P641S 0.39 tolerated(0.06) possibly_damaging(0.764) TCGA-IH-A3EA-01 12 72175847 72175847 C T RAB21 Missense_Mutation p.S143F 0.41 deleterious(0.01) possibly_damaging(0.696) TCGA-IH-A3EA-01 12 72388250 72388250 C T TPH2 Missense_Mutation p.P325S 0.34 deleterious(0.02) probably_damaging(1) TCGA-IH-A3EA-01 12 7457038 7457038 C T ACSM4 Silent p.D37D 0.24 TCGA-IH-A3EA-01 12 7459299 7459299 C T ACSM4 Silent p.I124I 0.32 TCGA-IH-A3EA-01 12 7473361 7473361 C T ACSM4 Missense_Mutation p.P321L 0.24 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 12 7548916 7548916 C T CD163L1 Missense_Mutation p.D609N 0.32 tolerated(0.15) benign(0.327) TCGA-IH-A3EA-01 12 7550881 7550881 C T CD163L1 Missense_Mutation p.D570N 0.40 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 12 75884292 75884292 G A GLIPR1 Missense_Mutation p.G176E 0.54 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 12 79679607 79679607 C T SYT1 Silent p.V69V 0.33 TCGA-IH-A3EA-01 12 80203735 80203735 G A PPP1R12A Missense_Mutation p.S432F 0.30 deleterious(0) possibly_damaging(0.746) TCGA-IH-A3EA-01 12 80730314 80730314 C T OTOGL Silent p.I1565I 0.31 TCGA-IH-A3EA-01 12 81111130 81111130 G A MYF5 Silent p.L96L 0.28 TCGA-IH-A3EA-01 12 81112661 81112661 C T MYF5 Missense_Mutation p.S200F 0.22 tolerated(0.22) possibly_damaging(0.557) TCGA-IH-A3EA-01 12 81545838 81545838 G A ACSS3 Missense_Mutation p.G354E 0.28 deleterious(0) probably_damaging(0.932) TCGA-IH-A3EA-01 12 81624882 81624882 G A ACSS3 Missense_Mutation p.E521K 0.23 tolerated(0.11) benign(0.253) TCGA-IH-A3EA-01 12 81741521 81741521 C T PPFIA2 Missense_Mutation p.E675K 0.44 deleterious(0) probably_damaging(0.986) TCGA-IH-A3EA-01 12 81833809 81833809 C T PPFIA2 Missense_Mutation p.R196K 0.38 tolerated(0.06) possibly_damaging(0.612) TCGA-IH-A3EA-01 12 82750862 82750862 G A CCDC59 Missense_Mutation p.P114L 0.32 tolerated(0.06) benign(0.002) TCGA-IH-A3EA-01 12 9013826 9013826 C T A2ML1 Silent p.S1145S 0.32 TCGA-IH-A3EA-01 12 9013827 9013827 C T A2ML1 Silent p.L1146L 0.30 TCGA-IH-A3EA-01 12 93164056 93164056 G A PLEKHG7 3'UTR 0.56 TCGA-IH-A3EA-01 12 9345244 9345244 G A PZP Missense_Mutation p.S449F 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-IH-A3EA-01 12 95702281 95702281 C T MIR331 RNA 0.36 TCGA-IH-A3EA-01 12 95927690 95927690 G A USP44 Missense_Mutation p.R115C 0.32 deleterious(0.01) possibly_damaging(0.726) TCGA-IH-A3EA-01 12 96180938 96180938 C T NTN4 Missense_Mutation p.E122K 0.38 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 12 97045486 97045486 C T C12orf55 Missense_Mutation p.P1665S 0.21 deleterious(0.03) possibly_damaging(0.794) TCGA-IH-A3EA-01 13 101167781 101167781 C T PCCA Missense_Mutation p.P667L 0.33 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 13 111082242 111082242 G A COL4A2 Missense_Mutation p.G163E 0.28 probably_damaging(1) TCGA-IH-A3EA-01 13 113803231 113803231 G A F10 Silent p.G289G 0.41 TCGA-IH-A3EA-01 13 25008975 25008975 G A PARP4 Missense_Mutation p.P1435L 0.26 tolerated(0.05) benign(0.003) TCGA-IH-A3EA-01 13 25670468 25670468 G A PABPC3 Silent p.R44R 0.19 TCGA-IH-A3EA-01 13 27690693 27690693 T G USP12 Missense_Mutation p.E30A 0.32 tolerated(0.17) benign(0.019) TCGA-IH-A3EA-01 13 28519373 28519373 G A ATP5EP2 5'UTR 0.36 TCGA-IH-A3EA-01 13 32313824 32313824 C T RXFP2 Silent p.I25I 0.30 TCGA-IH-A3EA-01 13 32913053 32913053 C T BRCA2 Silent p.L1521L 0.33 TCGA-IH-A3EA-01 13 36124729 36124729 G A NBEA Missense_Mutation p.R2234Q 0.32 deleterious(0) benign(0.122) TCGA-IH-A3EA-01 13 36242644 36242644 C T NBEA Missense_Mutation p.S2913F 0.37 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 13 38266349 38266349 G A TRPC4 Missense_Mutation p.P341S 0.48 deleterious(0) probably_damaging(0.993) TCGA-IH-A3EA-01 13 39587713 39587713 G A PROSER1 Missense_Mutation p.S559F 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-IH-A3EA-01 13 42873925 42873925 C A AKAP11 Nonsense_Mutation p.S348* 0.32 TCGA-IH-A3EA-01 13 46357741 46357741 G A SIAH3 Missense_Mutation p.A196V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-IH-A3EA-01 13 52531719 52531719 T G ATP7B Missense_Mutation p.K794Q 0.33 deleterious(0) possibly_damaging(0.801) TCGA-IH-A3EA-01 13 53298230 53298230 G A LECT1 Missense_Mutation p.R124C 0.30 tolerated(0.1) probably_damaging(0.98) TCGA-IH-A3EA-01 13 58207430 58207430 G A PCDH17 Silent p.V250V 0.36 TCGA-IH-A3EA-01 13 58299357 58299357 G A PCDH17 Missense_Mutation p.E1137K 0.32 tolerated_low_confidence(0.17) benign(0.004) TCGA-IH-A3EA-01 13 60566687 60566687 C G DIAPH3 Missense_Mutation p.V349L 0.08 deleterious(0.04) benign(0.17) TCGA-IH-A3EA-01 13 61985978 61985978 G A PCDH20 Silent p.L752L 0.35 TCGA-IH-A3EA-01 13 78493599 78493599 G A EDNRB Missense_Mutation p.A51V 0.37 deleterious_low_confidence(0) benign(0.008) TCGA-IH-A3EA-01 13 79190715 79190715 G A RNF219 Missense_Mutation p.S394F 0.29 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 13 97484941 97484941 C T HS6ST3 Missense_Mutation p.T302I 0.29 deleterious(0) possibly_damaging(0.46) TCGA-IH-A3EA-01 13 98621999 98621999 G A IPO5 5'UTR 0.37 TCGA-IH-A3EA-01 13 99907947 99907947 A T GPR18 Nonsense_Mutation p.Y60* 0.25 TCGA-IH-A3EA-01 14 102028471 102028471 C T DIO3 Missense_Mutation p.P213L 0.36 deleterious(0.03) probably_damaging(0.909) TCGA-IH-A3EA-01 14 102900995 102900995 C T TECPR2 Missense_Mutation p.P614L 0.43 deleterious_low_confidence(0.04) benign(0.003) TCGA-IH-A3EA-01 14 105176039 105176039 C T INF2 Missense_Mutation p.P712L 0.33 deleterious(0) unknown(0) TCGA-IH-A3EA-01 14 106110183 106110183 C T IGHG2 Silent p.V145V 0.34 TCGA-IH-A3EA-01 14 106174851 106174851 C T IGHA1 Missense_Mutation p.R51K 0.36 tolerated(1) benign(0.056) TCGA-IH-A3EA-01 14 106692121 106692121 C T IGHV3-21 Missense_Mutation p.E2K 0.29 tolerated_low_confidence(0.12) benign(0.026) TCGA-IH-A3EA-01 14 106829745 106829745 C T IGHV4-34 Nonsense_Mutation p.W73* 0.29 TCGA-IH-A3EA-01 14 107282870 107282870 C T IGHV7-81 Missense_Mutation p.M91I 0.24 tolerated(0.14) benign(0.048) TCGA-IH-A3EA-01 14 20248974 20248974 C T OR4M1 Nonsense_Mutation p.R165* 0.20 TCGA-IH-A3EA-01 14 20295638 20295638 G A OR4N2 Missense_Mutation p.E11K 0.25 deleterious(0.02) benign(0.12) TCGA-IH-A3EA-01 14 20296060 20296060 G A OR4N2 Silent p.G151G 0.18 TCGA-IH-A3EA-01 14 20296061 20296061 G T OR4N2 Missense_Mutation p.G152C 0.18 deleterious(0) probably_damaging(0.992) TCGA-IH-A3EA-01 14 20612077 20612077 C T OR4N5 Silent p.F61F 0.37 TCGA-IH-A3EA-01 14 20666123 20666123 G A OR11G2 Missense_Mutation p.R210K 0.51 tolerated(0.06) benign(0.013) TCGA-IH-A3EA-01 14 20692503 20692503 C T OR11H6 Missense_Mutation p.S212F 0.29 tolerated(0.12) benign(0.008) TCGA-IH-A3EA-01 14 21109402 21109402 C A OR6S1 Missense_Mutation p.C150F 0.35 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 14 21811192 21811192 C T RPGRIP1 Intron 0.30 TCGA-IH-A3EA-01 14 22476272 22476272 C T TRAV19 Missense_Mutation p.L68F 0.24 deleterious(0) possibly_damaging(0.681) TCGA-IH-A3EA-01 14 22675459 22675459 G A TRAV34 Silent p.G10G 0.44 TCGA-IH-A3EA-01 14 22675745 22675745 C T TRAV34 Silent p.V19V 0.50 TCGA-IH-A3EA-01 14 22783200 22783200 T A TRAV40 Missense_Mutation p.Y56N 0.37 deleterious(0) possibly_damaging(0.582) TCGA-IH-A3EA-01 14 23873577 23873577 G A MYH6 Silent p.I221I 0.35 TCGA-IH-A3EA-01 14 23884682 23884682 C T MYH7 Missense_Mutation p.D1731N 0.29 deleterious(0) benign(0.124) TCGA-IH-A3EA-01 14 23887249 23887249 C T MYH7 Intron 0.38 TCGA-IH-A3EA-01 14 23894149 23894149 G A MYH7 Silent p.I836I 0.30 TCGA-IH-A3EA-01 14 24569397 24569397 C T PCK2 Silent p.S403S 0.38 TCGA-IH-A3EA-01 14 24885848 24885848 C T NYNRIN Silent p.G1631G 0.45 TCGA-IH-A3EA-01 14 33293756 33293756 C T AKAP6 Missense_Mutation p.P2246L 0.26 tolerated_low_confidence(0.06) benign(0.11) TCGA-IH-A3EA-01 14 37145561 37145561 G T PAX9 Missense_Mutation p.L310F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-IH-A3EA-01 14 38724094 38724094 G A CLEC14A Silent p.S378S 0.24 TCGA-IH-A3EA-01 14 39716716 39716716 G A MIA2 Missense_Mutation p.G313E 0.36 tolerated(0.1) benign(0.319) TCGA-IH-A3EA-01 14 39722040 39722040 G A MIA2 Silent p.S552S 0.34 TCGA-IH-A3EA-01 14 59112062 59112062 T C DACT1 Missense_Mutation p.F241L 0.39 tolerated(0.1) benign(0.079) TCGA-IH-A3EA-01 14 59113798 59113798 G A DACT1 Silent p.K819K 0.37 TCGA-IH-A3EA-01 14 62567222 62567222 T A SYT16 Missense_Mutation p.F579I 0.32 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 14 63174573 63174573 G A KCNH5 Missense_Mutation p.R874C 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IH-A3EA-01 14 64749606 64749606 G A ESR2 Missense_Mutation p.P33L 0.36 deleterious(0) probably_damaging(0.989) TCGA-IH-A3EA-01 14 64921587 64921587 A T MTHFD1 Silent p.V904V 0.35 TCGA-IH-A3EA-01 14 65234520 65234520 G A SPTB Missense_Mutation p.A2027V 0.37 deleterious(0) possibly_damaging(0.586) TCGA-IH-A3EA-01 14 68249705 68249705 T A ZFYVE26 Silent p.A1388A 0.31 TCGA-IH-A3EA-01 14 68274262 68274262 A C ZFYVE26 Missense_Mutation p.C247G 0.27 deleterious(0.01) benign(0.241) TCGA-IH-A3EA-01 14 70512721 70512721 C T SLC8A3 Nonsense_Mutation p.W909* 0.27 TCGA-IH-A3EA-01 14 70530586 70530586 G A SLC8A3 Intron 0.37 TCGA-IH-A3EA-01 14 70714074 70714074 G C ADAM21P1 RNA 0.16 TCGA-IH-A3EA-01 14 70924520 70924520 C G ADAM21 Missense_Mutation p.Q102E 0.12 deleterious(0.03) benign(0.061) TCGA-IH-A3EA-01 14 70926307 70926307 C T ADAM21 Silent p.F697F 0.40 TCGA-IH-A3EA-01 14 70991364 70991364 G A ADAM20 Silent p.F87F 0.39 TCGA-IH-A3EA-01 14 74185986 74185986 G A ELMSAN1 3'UTR 0.44 TCGA-IH-A3EA-01 14 74439610 74439610 C T ENTPD5 Missense_Mutation p.R335Q 0.37 tolerated(0.05) probably_damaging(0.992) TCGA-IH-A3EA-01 14 75329637 75329637 C T PROX2 Intron 0.22 TCGA-IH-A3EA-01 14 76243179 76243179 C T TTLL5 Silent p.F791F 0.34 TCGA-IH-A3EA-01 14 77242369 77242369 G A VASH1 Missense_Mutation p.R222Q 0.56 deleterious(0) probably_damaging(0.986) TCGA-IH-A3EA-01 14 77844570 77844570 G A SAMD15 Missense_Mutation p.R270K 0.28 tolerated(0.13) benign(0.036) TCGA-IH-A3EA-01 14 88729796 88729796 G A KCNK10 Missense_Mutation p.S51F 0.30 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-IH-A3EA-01 14 91647655 91647655 C T C14orf159 Missense_Mutation p.P286S 0.19 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 14 92040870 92040870 G A AL133373.1 Silent p.P29P 0.55 TCGA-IH-A3EA-01 14 93180777 93180777 A G LGMN Missense_Mutation p.F142L 0.45 deleterious(0) possibly_damaging(0.651) TCGA-IH-A3EA-01 14 94120290 94120290 G A UNC79 Silent p.G1929G 0.33 TCGA-IH-A3EA-01 14 94756232 94756232 C T SERPINA10 Silent p.V233V 0.26 TCGA-IH-A3EA-01 14 94962758 94962758 C T SERPINA12 Missense_Mutation p.G286E 0.33 deleterious(0.05) benign(0.238) TCGA-IH-A3EA-01 15 100340018 100340018 G A DNM1P46 RNA 0.31 TCGA-IH-A3EA-01 15 101825959 101825959 G A SNRPA1 Missense_Mutation p.P196L 0.36 tolerated(0.12) benign(0.02) TCGA-IH-A3EA-01 15 101924541 101924541 C T PCSK6 Missense_Mutation p.G466D 0.50 deleterious(0) probably_damaging(0.992) TCGA-IH-A3EA-01 15 101933603 101933603 G A PCSK6 Silent p.F340F 0.32 TCGA-IH-A3EA-01 15 20657798 20657798 G A HERC2P3 RNA 0.22 TCGA-IH-A3EA-01 15 22368697 22368697 G A OR4M2 Missense_Mutation p.G41E 0.18 deleterious(0) benign(0.425) TCGA-IH-A3EA-01 15 24922426 24922426 C T NPAP1 Missense_Mutation p.P471L 0.40 deleterious(0) benign(0.052) TCGA-IH-A3EA-01 15 24922810 24922810 C T NPAP1 Missense_Mutation p.S599F 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-IH-A3EA-01 15 24924458 24924458 G A NPAP1 Silent p.R1148R 0.26 TCGA-IH-A3EA-01 15 25304722 25304722 G A SNORD116-3 3'Flank 0.28 TCGA-IH-A3EA-01 15 25477463 25477463 C T SNORD115-33 3'Flank 0.33 TCGA-IH-A3EA-01 15 32928676 32928676 C T ARHGAP11A Missense_Mutation p.P568S 0.41 tolerated(0.74) benign(0.013) TCGA-IH-A3EA-01 15 34042401 34042401 C T RYR3 Silent p.T2771T 0.55 TCGA-IH-A3EA-01 15 44888545 44888545 G A SPG11 Silent p.S1390S 0.33 TCGA-IH-A3EA-01 15 45560424 45560424 C T SLC28A2 Silent p.L406L 0.39 TCGA-IH-A3EA-01 15 49447856 49447856 C T COPS2 5'UTR 0.33 TCGA-IH-A3EA-01 15 50190418 50190418 C T ATP8B4 Missense_Mutation p.D774N 0.35 tolerated(0.18) possibly_damaging(0.805) TCGA-IH-A3EA-01 15 51514575 51514575 T C CYP19A1 Missense_Mutation p.N200S 0.33 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 15 54306845 54306845 C T UNC13C Missense_Mutation p.S582L 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IH-A3EA-01 15 54306874 54306874 G A UNC13C Missense_Mutation p.E592K 0.24 deleterious_low_confidence(0.01) benign(0.16) TCGA-IH-A3EA-01 15 54307210 54307210 G A UNC13C Missense_Mutation p.D704N 0.43 deleterious_low_confidence(0.01) benign(0.386) TCGA-IH-A3EA-01 15 54860025 54860025 C T UNC13C Silent p.L1996L 0.25 TCGA-IH-A3EA-01 15 54916148 54916148 C T UNC13C Nonsense_Mutation p.Q2119* 0.36 TCGA-IH-A3EA-01 15 57730860 57730860 C T CGNL1 Silent p.S221S 0.33 TCGA-IH-A3EA-01 15 57925811 57925811 G A GCOM1 Missense_Mutation p.E269K 0.26 tolerated(0.17) possibly_damaging(0.476) TCGA-IH-A3EA-01 15 58285260 58285260 G A ALDH1A2 Silent p.P189P 0.31 TCGA-IH-A3EA-01 15 63937265 63937265 G A HERC1 Missense_Mutation p.R3704C 0.39 benign(0.163) TCGA-IH-A3EA-01 15 64429877 64429877 C T SNX1 Intron 0.25 TCGA-IH-A3EA-01 15 65108936 65108936 G A PIF1 Missense_Mutation p.S568F 0.30 deleterious(0) probably_damaging(0.995) TCGA-IH-A3EA-01 15 65458980 65458980 G A CLPX Missense_Mutation p.P168S 0.30 tolerated(0.18) possibly_damaging(0.484) TCGA-IH-A3EA-01 15 65551759 65551759 G A PARP16 Missense_Mutation p.R320C 0.31 deleterious(0) probably_damaging(0.972) TCGA-IH-A3EA-01 15 68124983 68124983 C T SKOR1 Nonsense_Mutation p.R804* 0.41 TCGA-IH-A3EA-01 15 71305235 71305235 C T LRRC49 Silent p.S567S 0.32 TCGA-IH-A3EA-01 15 71447268 71447268 G A THSD4 Silent p.R32R 0.36 TCGA-IH-A3EA-01 15 72175941 72175941 G A MYO9A Missense_Mutation p.P1798S 0.40 tolerated(0.81) benign(0.004) TCGA-IH-A3EA-01 15 73617306 73617306 G A HCN4 Silent p.S656S 0.37 TCGA-IH-A3EA-01 15 74912474 74912474 C T CLK3 Missense_Mutation p.R241W 0.37 deleterious(0) probably_damaging(0.99) TCGA-IH-A3EA-01 15 75982861 75982861 C T CSPG4 Missense_Mutation p.R182Q 0.06 tolerated(0.33) benign(0.011) TCGA-IH-A3EA-01 15 77769936 77769936 C T HMG20A Missense_Mutation p.P219S 0.37 deleterious(0) probably_damaging(0.984) TCGA-IH-A3EA-01 15 78211645 78211645 G A RP11-114H24.7 Intron 0.44 TCGA-IH-A3EA-01 15 78473204 78473204 G A ACSBG1 Silent p.I382I 0.34 TCGA-IH-A3EA-01 15 78921780 78921780 G A CHRNB4 Silent p.S289S 0.36 TCGA-IH-A3EA-01 15 83438571 83438571 C T FSD2 Missense_Mutation p.E445K 0.33 deleterious(0.02) probably_damaging(1) TCGA-IH-A3EA-01 15 84539574 84539574 C G ADAMTSL3 Missense_Mutation p.Q275E 0.27 deleterious(0.01) benign(0.326) TCGA-IH-A3EA-01 15 84694037 84694037 G A ADAMTSL3 Missense_Mutation p.G1502E 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-IH-A3EA-01 15 85383917 85383917 C T ALPK3 Silent p.S671S 0.31 TCGA-IH-A3EA-01 15 85438184 85438184 C T SLC28A1 Silent p.F97F 0.38 TCGA-IH-A3EA-01 15 86808051 86808051 G A AGBL1 Missense_Mutation p.R504Q 0.27 deleterious(0) probably_damaging(0.976) TCGA-IH-A3EA-01 15 89198801 89198801 C T ISG20 3'UTR 0.38 TCGA-IH-A3EA-01 15 89398201 89398201 C T ACAN Silent p.P795P 0.23 TCGA-IH-A3EA-01 15 89400693 89400693 C T ACAN Missense_Mutation p.P1626L 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-IH-A3EA-01 15 89400835 89400835 C T ACAN Silent p.S1673S 0.34 TCGA-IH-A3EA-01 15 90190845 90190845 C G KIF7 Missense_Mutation p.M514I 0.23 deleterious(0.02) possibly_damaging(0.792) TCGA-IH-A3EA-01 15 90320308 90320308 C T MESP2 Silent p.V240V 0.58 TCGA-IH-A3EA-01 15 90320321 90320321 C T MESP2 Missense_Mutation p.P245S 0.41 tolerated(0.24) benign(0.015) TCGA-IH-A3EA-01 15 96877367 96877367 G A NR2F2 Missense_Mutation p.G169R 0.32 deleterious(0.03) benign(0.049) TCGA-IH-A3EA-01 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.31 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-IH-A3EA-01 16 11363158 11363158 C T TNP2 5'UTR 0.40 TCGA-IH-A3EA-01 16 1257820 1257820 C T CACNA1H Silent p.F1038F 0.38 TCGA-IH-A3EA-01 16 16276417 16276417 G T ABCC6 Missense_Mutation p.A700D 0.31 deleterious(0.01) possibly_damaging(0.749) TCGA-IH-A3EA-01 16 17228461 17228461 C T XYLT1 Silent p.E632E 0.34 TCGA-IH-A3EA-01 16 1961872 1961872 C T HS3ST6 Missense_Mutation p.E219K 0.41 deleterious(0.02) possibly_damaging(0.866) TCGA-IH-A3EA-01 16 1961873 1961873 C T HS3ST6 Silent p.G218G 0.41 TCGA-IH-A3EA-01 16 1991306 1991306 G A MSRB1 Silent p.A52A 0.45 TCGA-IH-A3EA-01 16 20362025 20362025 A G UMOD Missense_Mutation p.V12A 0.32 tolerated_low_confidence(0.06) benign(0.004) TCGA-IH-A3EA-01 16 20636748 20636748 C T ACSM1 Silent p.G508G 0.24 TCGA-IH-A3EA-01 16 20975956 20975956 G A DNAH3 Missense_Mutation p.P3084S 0.39 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 16 21098365 21098365 C T DNAH3 Silent p.L894L 0.32 TCGA-IH-A3EA-01 16 21139052 21139052 C T DNAH3 Silent p.V388V 0.39 TCGA-IH-A3EA-01 16 21147717 21147717 G A DNAH3 Silent p.L272L 0.29 TCGA-IH-A3EA-01 16 21147718 21147718 G A DNAH3 Silent p.F271F 0.29 TCGA-IH-A3EA-01 16 21854860 21854860 G A NPIPB4 Missense_Mutation p.S131F 0.16 benign(0.202) TCGA-IH-A3EA-01 16 22155674 22155674 A G VWA3A Missense_Mutation p.H900R 0.21 deleterious(0.02) benign(0.122) TCGA-IH-A3EA-01 16 23203765 23203765 C T SCNN1G Silent p.I237I 0.34 TCGA-IH-A3EA-01 16 2334793 2334793 G A ABCA3 Silent p.I1230I 0.32 TCGA-IH-A3EA-01 16 2349414 2349414 G A ABCA3 Silent p.S577S 0.40 TCGA-IH-A3EA-01 16 2514543 2514543 C T C16orf59 Silent p.L392L 0.51 TCGA-IH-A3EA-01 16 25266545 25266545 G A ZKSCAN2 Missense_Mutation p.R190W 0.37 deleterious(0.04) possibly_damaging(0.487) TCGA-IH-A3EA-01 16 27475767 27475767 G A GTF3C1 Missense_Mutation p.L1916F 0.27 tolerated(0.15) benign(0.26) TCGA-IH-A3EA-01 16 27492429 27492429 G A GTF3C1 Silent p.I1389I 0.32 TCGA-IH-A3EA-01 16 29755631 29755631 C T C16orf54 Nonsense_Mutation p.W214* 0.31 TCGA-IH-A3EA-01 16 30532830 30532830 G A ITGAL Silent p.R1119R 0.17 TCGA-IH-A3EA-01 16 31090316 31090316 C T ZNF646 Missense_Mutation p.P891S 0.42 tolerated(0.09) probably_damaging(0.996) TCGA-IH-A3EA-01 16 31391650 31391650 G A ITGAX Missense_Mutation p.E1042K 0.33 tolerated(0.13) probably_damaging(0.973) TCGA-IH-A3EA-01 16 31539946 31539946 C T AHSP Silent p.F81F 0.24 TCGA-IH-A3EA-01 16 3254943 3254943 G A OR1F1 Missense_Mutation p.G233R 0.37 deleterious(0.01) possibly_damaging(0.905) TCGA-IH-A3EA-01 16 417634 417634 G A MRPL28 3'UTR 0.37 TCGA-IH-A3EA-01 16 4254582 4254582 C T SRL Missense_Mutation p.E39K 0.39 tolerated(0.11) benign(0.176) TCGA-IH-A3EA-01 16 4412714 4412714 G A CORO7 Missense_Mutation p.S434L 0.62 tolerated(0.18) benign(0.005) TCGA-IH-A3EA-01 16 4414375 4414375 G A CORO7 Missense_Mutation p.P393S 0.42 tolerated(0.12) benign(0.011) TCGA-IH-A3EA-01 16 4557933 4557933 G A HMOX2 Missense_Mutation p.G142R 0.46 tolerated(0.05) probably_damaging(0.992) TCGA-IH-A3EA-01 16 4802926 4802926 G T ZNF500 Silent p.V298V 0.33 TCGA-IH-A3EA-01 16 5139180 5139180 G A FAM86A Missense_Mutation p.R274W 0.06 deleterious(0) benign(0.003) TCGA-IH-A3EA-01 16 53639397 53639397 G A RPGRIP1L Silent p.I1277I 0.36 TCGA-IH-A3EA-01 16 56947439 56947439 G A SLC12A3 3'UTR 0.27 TCGA-IH-A3EA-01 16 57597819 57597819 G A GPR114 Silent p.R119R 0.44 TCGA-IH-A3EA-01 16 58149201 58149201 G A C16orf80 Missense_Mutation p.T146I 0.36 deleterious(0) probably_damaging(0.993) TCGA-IH-A3EA-01 16 58325019 58325019 G A PRSS54 Missense_Mutation p.S36F 0.21 tolerated(0.37) benign(0.002) TCGA-IH-A3EA-01 16 58619371 58619371 A G CNOT1 Missense_Mutation p.L226P 0.38 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 16 58749978 58749978 G A GOT2 Missense_Mutation p.P320L 0.47 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 16 66918732 66918732 C T PDP2 Missense_Mutation p.P182L 0.39 deleterious(0.01) possibly_damaging(0.889) TCGA-IH-A3EA-01 16 66945846 66945846 G A CDH16 Silent p.F582F 0.38 TCGA-IH-A3EA-01 16 66997130 66997130 G A CES3 Missense_Mutation p.R44Q 0.39 tolerated(0.38) possibly_damaging(0.457) TCGA-IH-A3EA-01 16 67199648 67199648 G T HSF4 Nonsense_Mutation p.E87* 0.58 TCGA-IH-A3EA-01 16 67265175 67265175 G A FHOD1 Silent p.H861H 0.38 TCGA-IH-A3EA-01 16 67328566 67328566 C T KCTD19 Missense_Mutation p.E503K 0.28 deleterious(0.02) possibly_damaging(0.728) TCGA-IH-A3EA-01 16 67404995 67404995 G A LRRC36 Silent p.R448R 0.33 TCGA-IH-A3EA-01 16 69681168 69681168 C T NFAT5 Missense_Mutation p.P164L 0.37 probably_damaging(0.999) TCGA-IH-A3EA-01 16 731277 731277 G A STUB1 Silent p.K95K 0.22 TCGA-IH-A3EA-01 16 74729434 74729434 C T MLKL Silent p.G74G 0.36 TCGA-IH-A3EA-01 16 75276718 75276718 G A BCAR1 Missense_Mutation p.P141S 0.53 tolerated(0.23) benign(0.019) TCGA-IH-A3EA-01 16 76501369 76501369 C T CNTNAP4 Missense_Mutation p.S462F 0.45 tolerated(0.07) benign(0.125) TCGA-IH-A3EA-01 16 76513417 76513417 C T CNTNAP4 Silent p.L549L 0.29 TCGA-IH-A3EA-01 16 7714948 7714948 G A RBFOX1 Intron 0.32 TCGA-IH-A3EA-01 16 77334253 77334253 G A ADAMTS18 Missense_Mutation p.P861S 0.39 tolerated(0.12) benign(0.119) TCGA-IH-A3EA-01 16 77398153 77398153 C T ADAMTS18 Missense_Mutation p.D302N 0.43 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 16 77850847 77850847 G A VAT1L Missense_Mutation p.R88Q 0.35 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 16 82033251 82033251 G A SDR42E1 Missense_Mutation p.P216L 0.26 deleterious(0.01) possibly_damaging(0.833) TCGA-IH-A3EA-01 16 822892 822892 C T MSLNL Missense_Mutation p.E765K 0.33 benign(0.171) TCGA-IH-A3EA-01 16 83781803 83781803 C T CDH13 Silent p.S590S 0.32 TCGA-IH-A3EA-01 16 85712224 85712224 C T GINS2 Silent p.K118K 0.40 TCGA-IH-A3EA-01 16 85942826 85942826 C T IRF8 Intron 0.38 TCGA-IH-A3EA-01 16 87866447 87866447 G A SLC7A5 3'UTR 0.46 TCGA-IH-A3EA-01 16 87866448 87866448 G A SLC7A5 3'UTR 0.48 TCGA-IH-A3EA-01 16 88926363 88926363 G A TRAPPC2L Silent p.G119G 0.38 TCGA-IH-A3EA-01 16 89348316 89348316 G A ANKRD11 Missense_Mutation p.P1545L 0.38 benign(0) TCGA-IH-A3EA-01 16 9197091 9197091 C T C16orf72 Silent p.P186P 0.33 TCGA-IH-A3EA-01 16 9858202 9858202 G A GRIN2A Missense_Mutation p.R1067W 0.74 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 10247152 10247152 G A MYH13 Missense_Mutation p.S620F 0.35 deleterious(0.02) possibly_damaging(0.685) TCGA-IH-A3EA-01 17 10247208 10247208 G A MYH13 Silent p.D601D 0.41 TCGA-IH-A3EA-01 17 10348560 10348560 G A MYH4 Silent p.I1763I 0.37 TCGA-IH-A3EA-01 17 10358358 10358358 C T MYH4 Missense_Mutation p.E779K 0.33 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 17 10426639 10426639 C T MYH2 Missense_Mutation p.E1855K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-IH-A3EA-01 17 10430078 10430078 G A MYH2 Missense_Mutation p.S1342F 0.34 deleterious(0) benign(0.151) TCGA-IH-A3EA-01 17 12647717 12647717 G A MYOCD Missense_Mutation p.R312Q 0.43 tolerated(0.28) possibly_damaging(0.46) TCGA-IH-A3EA-01 17 12649325 12649325 C T MYOCD Missense_Mutation p.S354F 0.34 deleterious(0.01) possibly_damaging(0.899) TCGA-IH-A3EA-01 17 12655875 12655875 C T MYOCD Missense_Mutation p.P424S 0.36 tolerated(0.08) probably_damaging(1) TCGA-IH-A3EA-01 17 12656204 12656204 G A MYOCD Nonsense_Mutation p.W533* 0.44 TCGA-IH-A3EA-01 17 12919117 12919117 G A ELAC2 Missense_Mutation p.P134S 0.33 deleterious(0.01) possibly_damaging(0.69) TCGA-IH-A3EA-01 17 15878535 15878535 G A ADORA2B Missense_Mutation p.R293Q 0.39 deleterious(0.03) benign(0.029) TCGA-IH-A3EA-01 17 16456476 16456476 A G ZNF287 Missense_Mutation p.L327P 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-IH-A3EA-01 17 16664973 16664973 G A CCDC144A Missense_Mutation p.E1203K 0.28 tolerated(0.08) benign(0.026) TCGA-IH-A3EA-01 17 18049228 18049228 G T MYO15A Nonsense_Mutation p.E2106* 0.46 TCGA-IH-A3EA-01 17 18668087 18668087 G A FBXW10 Missense_Mutation p.R489Q 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-IH-A3EA-01 17 19317435 19317435 G A RNF112 Missense_Mutation p.D285N 0.28 tolerated(0.1) benign(0.132) TCGA-IH-A3EA-01 17 19643780 19643780 C T ALDH3A1 Missense_Mutation p.G273E 0.24 deleterious(0) possibly_damaging(0.82) TCGA-IH-A3EA-01 17 19699555 19699555 G A ULK2 Missense_Mutation p.S617F 0.41 tolerated(0.11) possibly_damaging(0.864) TCGA-IH-A3EA-01 17 21731490 21731490 C T UBBP4 Missense_Mutation p.P189S 0.39 deleterious(0.02) benign(0.137) TCGA-IH-A3EA-01 17 25910126 25910126 G A KSR1 Silent p.S188S 0.44 TCGA-IH-A3EA-01 17 2595331 2595331 G A CLUH Silent p.H1168H 0.42 TCGA-IH-A3EA-01 17 26101399 26101399 G A NOS2 Missense_Mutation p.R454C 0.38 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 28407958 28407958 G A EFCAB5 Missense_Mutation p.E1129K 0.30 tolerated(0.49) benign(0.012) TCGA-IH-A3EA-01 17 28545157 28545157 G A SLC6A4 Missense_Mutation p.S226F 0.16 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 28545313 28545313 G A SLC6A4 Missense_Mutation p.S174F 0.33 tolerated(1) benign(0.006) TCGA-IH-A3EA-01 17 28849413 28849413 A T GOSR1 3'UTR 0.29 TCGA-IH-A3EA-01 17 28849414 28849414 C T GOSR1 3'UTR 0.29 TCGA-IH-A3EA-01 17 3336434 3336434 G A OR1E2 Silent p.I234I 0.25 TCGA-IH-A3EA-01 17 33591399 33591399 C A SLFN5 Missense_Mutation p.Q446K 0.34 tolerated(0.29) benign(0.104) TCGA-IH-A3EA-01 17 33806552 33806552 T C SLFN12L Missense_Mutation p.N226S 0.35 tolerated(0.41) benign(0.03) TCGA-IH-A3EA-01 17 33935215 33935215 T A AP2B1 Missense_Mutation p.C112S 0.28 deleterious(0) benign(0.227) TCGA-IH-A3EA-01 17 36707615 36707615 C T SRCIN1 Missense_Mutation p.R913Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 17 3717754 3717754 T - C17orf85 Frame_Shift_Del p.R497Dfs*27 0.32 TCGA-IH-A3EA-01 17 3785639 3785639 G A CAMKK1 Silent p.I237I 0.35 TCGA-IH-A3EA-01 17 38172059 38172059 G A CSF3 Silent p.R52R 0.33 TCGA-IH-A3EA-01 17 3839645 3839645 G A ATP2A3 Silent p.L814L 0.35 TCGA-IH-A3EA-01 17 38816422 38816422 T G KRT222 Missense_Mutation p.Q88P 0.37 tolerated(0.12) possibly_damaging(0.664) TCGA-IH-A3EA-01 17 39261648 39261648 G A KRTAP4-9 Missense_Mutation p.S3N 0.48 tolerated(1) unknown(0) TCGA-IH-A3EA-01 17 39333937 39333937 G A KRTAP4-2 3'UTR 0.40 TCGA-IH-A3EA-01 17 39538448 39538448 G A KRT34 Silent p.S59S 0.37 TCGA-IH-A3EA-01 17 39623286 39623286 C T KRT32 Missense_Mutation p.E98K 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-IH-A3EA-01 17 39633403 39633403 G A KRT35 Missense_Mutation p.P425S 0.33 tolerated(0.1) benign(0.032) TCGA-IH-A3EA-01 17 39777124 39777124 G A KRT17 Missense_Mutation p.S323F 0.46 deleterious(0.02) possibly_damaging(0.462) TCGA-IH-A3EA-01 17 40447666 40447666 C G STAT5A Missense_Mutation p.D135E 0.48 tolerated(0.05) benign(0.001) TCGA-IH-A3EA-01 17 41590762 41590762 G C DHX8 Silent p.S845S 0.31 TCGA-IH-A3EA-01 17 41852248 41852248 C - DUSP3 Frame_Shift_Del p.A62Rfs*73 0.28 TCGA-IH-A3EA-01 17 42992432 42992432 C T GFAP Silent p.R141R 0.23 TCGA-IH-A3EA-01 17 43005579 43005579 G A KIF18B Silent p.S697S 0.46 TCGA-IH-A3EA-01 17 44073845 44073845 C T MAPT Missense_Mutation p.P548S 0.44 deleterious(0) probably_damaging(0.943) TCGA-IH-A3EA-01 17 46620533 46620533 G T HOXB2 Missense_Mutation p.S323Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 17 46620638 46620638 C T HOXB2 Missense_Mutation p.G288E 0.33 tolerated(1) benign(0) TCGA-IH-A3EA-01 17 46805985 46805985 G A HOXB13 5'UTR 0.23 TCGA-IH-A3EA-01 17 4850182 4850182 G A PFN1 Intron 0.29 TCGA-IH-A3EA-01 17 4862749 4862749 G A SPAG7 3'UTR 0.27 TCGA-IH-A3EA-01 17 48744965 48744965 C T ABCC3 Silent p.I494I 0.33 TCGA-IH-A3EA-01 17 50008401 50008401 C T CA10 Missense_Mutation p.M76I 0.33 tolerated(0.22) benign(0.012) TCGA-IH-A3EA-01 17 51901754 51901754 G A KIF2B Missense_Mutation p.G454R 0.43 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 56809927 56809927 T A RAD51C Intron 0.36 TCGA-IH-A3EA-01 17 57287389 57287389 G A SMG8 5'UTR 0.27 TCGA-IH-A3EA-01 17 57287390 57287390 G A SMG8 5'UTR 0.30 TCGA-IH-A3EA-01 17 58524960 58524960 G A APPBP2 Silent p.V580V 0.34 TCGA-IH-A3EA-01 17 60503872 60503872 G A METTL2A Missense_Mutation p.E139K 0.33 tolerated(0.33) benign(0.193) TCGA-IH-A3EA-01 17 62041996 62041996 C T SCN4A Silent p.V428V 0.39 TCGA-IH-A3EA-01 17 6381376 6381376 G A PITPNM3 Silent p.F273F 0.22 TCGA-IH-A3EA-01 17 64738852 64738852 G A PRKCA Missense_Mutation p.G500R 0.20 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 64738853 64738853 G A PRKCA Missense_Mutation p.G500E 0.20 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 17 6920628 6920628 C T C17orf49 Silent p.L189L 0.26 TCGA-IH-A3EA-01 17 7004974 7004974 G A ASGR2 Missense_Mutation p.R286C 0.35 deleterious(0.01) possibly_damaging(0.885) TCGA-IH-A3EA-01 17 72469803 72469803 C T CD300A Silent p.L57L 0.45 TCGA-IH-A3EA-01 17 73094203 73094203 C T SLC16A5 Silent p.A90A 0.50 TCGA-IH-A3EA-01 17 7340653 7340653 A T TMEM102 Missense_Mutation p.H452L 0.19 deleterious(0) probably_damaging(0.959) TCGA-IH-A3EA-01 17 7417270 7417270 C T POLR2A Missense_Mutation p.S1896F 0.44 possibly_damaging(0.472) TCGA-IH-A3EA-01 17 74395863 74395863 G A UBE2O Missense_Mutation p.P432L 0.45 tolerated(0.2) benign(0.001) TCGA-IH-A3EA-01 17 74396354 74396354 G A UBE2O Silent p.D343D 0.30 TCGA-IH-A3EA-01 17 76201782 76201782 C T AFMID Missense_Mutation p.S248F 0.38 deleterious(0) probably_damaging(0.979) TCGA-IH-A3EA-01 17 76482354 76482354 G A DNAH17 Silent p.F2337F 0.19 TCGA-IH-A3EA-01 17 76676406 76676406 G A CYTH1 Silent p.I328I 0.38 TCGA-IH-A3EA-01 17 7669782 7669782 C T DNAH2 Missense_Mutation p.L1220F 0.23 possibly_damaging(0.853) TCGA-IH-A3EA-01 17 7681727 7681727 C T DNAH2 Silent p.V1827V 0.26 TCGA-IH-A3EA-01 17 7683569 7683569 C T DNAH2 Silent p.I1939I 0.26 TCGA-IH-A3EA-01 17 76993734 76993734 G A CANT1 5'UTR 0.36 TCGA-IH-A3EA-01 17 78058748 78058748 C T CCDC40 Silent p.F732F 0.52 TCGA-IH-A3EA-01 17 79803495 79803495 G A P4HB Missense_Mutation p.A434V 0.44 tolerated(0.29) benign(0.004) TCGA-IH-A3EA-01 17 79892281 79892281 G A PYCR1 Missense_Mutation p.H240Y 0.62 tolerated(0.49) benign(0.009) TCGA-IH-A3EA-01 17 9532129 9532129 T A WDR16 Missense_Mutation p.I389N 0.32 deleterious(0) possibly_damaging(0.823) TCGA-IH-A3EA-01 17 9631397 9631397 C T USP43 Missense_Mutation p.S821F 0.40 tolerated(0.07) benign(0.287) TCGA-IH-A3EA-01 18 10672849 10672849 G A PIEZO2 Missense_Mutation p.T2615I 0.30 tolerated(0.06) benign(0.319) TCGA-IH-A3EA-01 18 21124449 21124449 G A NPC1 Silent p.I663I 0.31 TCGA-IH-A3EA-01 18 21181241 21181241 A T ANKRD29 Missense_Mutation p.N285K 0.42 tolerated(0.1) possibly_damaging(0.867) TCGA-IH-A3EA-01 18 21529786 21529786 C T LAMA3 Missense_Mutation p.P3137S 0.26 benign(0.032) TCGA-IH-A3EA-01 18 23724572 23724572 C T PSMA8 Missense_Mutation p.S51F 0.35 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 18 25589743 25589743 G A CDH2 Missense_Mutation p.P214S 0.23 tolerated(0.29) possibly_damaging(0.45) TCGA-IH-A3EA-01 18 28576965 28576965 C T DSC3 Missense_Mutation p.G762D 0.14 deleterious(0.02) benign(0.041) TCGA-IH-A3EA-01 18 28598119 28598119 G A DSC3 Missense_Mutation p.T394I 0.25 tolerated(0.06) probably_damaging(1) TCGA-IH-A3EA-01 18 28671063 28671063 C T DSC2 Silent p.K134K 0.59 TCGA-IH-A3EA-01 18 28916477 28916477 C T DSG1 Missense_Mutation p.S389L 0.30 deleterious(0) benign(0.146) TCGA-IH-A3EA-01 18 28934958 28934958 G A DSG1 Missense_Mutation p.M933I 0.56 tolerated(0.1) benign(0.003) TCGA-IH-A3EA-01 18 29039066 29039066 T C DSG3 Missense_Mutation p.L148S 0.59 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 18 31311936 31311936 G A ASXL3 Missense_Mutation p.G295E 0.24 possibly_damaging(0.866) TCGA-IH-A3EA-01 18 31325980 31325980 A C ASXL3 Missense_Mutation p.Q2056H 0.49 possibly_damaging(0.844) TCGA-IH-A3EA-01 18 33689595 33689595 G A SLC39A6 Silent p.S743S 0.41 TCGA-IH-A3EA-01 18 40853703 40853703 T G SYT4 Missense_Mutation p.T231P 0.21 deleterious(0.02) benign(0) TCGA-IH-A3EA-01 18 43440216 43440216 G A EPG5 Missense_Mutation p.L2288F 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-IH-A3EA-01 18 45566602 45566602 C T ZBTB7C Missense_Mutation p.E293K 0.17 tolerated(0.6) possibly_damaging(0.522) TCGA-IH-A3EA-01 18 45567247 45567247 C T ZBTB7C Missense_Mutation p.D78N 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-IH-A3EA-01 18 51052998 51052998 C T DCC Missense_Mutation p.P1375S 0.22 tolerated(0.24) benign(0.014) TCGA-IH-A3EA-01 18 52546620 52546620 G A RAB27B Silent p.P58P 0.50 TCGA-IH-A3EA-01 18 56246224 56246224 G A ALPK2 Missense_Mutation p.S595F 0.32 tolerated(0.06) benign(0.035) TCGA-IH-A3EA-01 18 59166667 59166667 C T CDH20 Silent p.F165F 0.36 TCGA-IH-A3EA-01 18 59221534 59221534 G A CDH20 Missense_Mutation p.G671D 0.26 deleterious(0) probably_damaging(0.99) TCGA-IH-A3EA-01 18 59925190 59925190 C T KIAA1468 Missense_Mutation p.R636C 0.20 tolerated(0.1) benign(0.286) TCGA-IH-A3EA-01 18 61262348 61262348 G A SERPINB13 Missense_Mutation p.G234E 0.54 tolerated(1) possibly_damaging(0.489) TCGA-IH-A3EA-01 18 61262349 61262349 G A SERPINB13 Silent p.G234G 0.54 TCGA-IH-A3EA-01 18 63476962 63476962 G A CDH7 Missense_Mutation p.G78E 0.25 deleterious(0.03) probably_damaging(1) TCGA-IH-A3EA-01 18 66564645 66564645 G A CCDC102B Missense_Mutation p.D415N 0.23 deleterious(0.03) benign(0.302) TCGA-IH-A3EA-01 18 6975034 6975034 G A LAMA1 Missense_Mutation p.S2164F 0.37 deleterious(0.02) possibly_damaging(0.673) TCGA-IH-A3EA-01 18 7011475 7011475 T A LAMA1 Missense_Mutation p.T1171S 0.50 tolerated(0.08) benign(0.037) TCGA-IH-A3EA-01 18 70451069 70451069 C T NETO1 Missense_Mutation p.D238N 0.25 deleterious(0) possibly_damaging(0.842) TCGA-IH-A3EA-01 18 73000170 73000170 C T TSHZ1 Silent p.S891S 0.22 TCGA-IH-A3EA-01 18 76757090 76757090 C T SALL3 Missense_Mutation p.A1224V 0.54 deleterious(0.03) probably_damaging(0.999) TCGA-IH-A3EA-01 18 77170515 77170515 C T NFATC1 Silent p.I67I 0.53 TCGA-IH-A3EA-01 18 77805969 77805969 C T RBFA Silent p.A282A 0.19 TCGA-IH-A3EA-01 18 77895637 77895637 G T ADNP2 Missense_Mutation p.D781Y 0.23 deleterious(0) probably_damaging(0.946) TCGA-IH-A3EA-01 18 8825195 8825195 C T SOGA2 Silent p.G1229G 0.42 TCGA-IH-A3EA-01 18 905487 905487 C T ADCYAP1 Missense_Mutation p.P34S 0.23 deleterious(0.01) benign(0.253) TCGA-IH-A3EA-01 19 1036119 1036119 C T CNN2 Intron 0.27 TCGA-IH-A3EA-01 19 1116088 1116088 G A SBNO2 Missense_Mutation p.S606L 0.37 deleterious(0) possibly_damaging(0.769) TCGA-IH-A3EA-01 19 11448055 11448055 G T RAB3D Silent p.T7T 0.35 TCGA-IH-A3EA-01 19 11891225 11891225 C T ZNF441 Missense_Mutation p.R196C 0.31 deleterious(0.02) benign(0) TCGA-IH-A3EA-01 19 11942924 11942924 C T ZNF440 Silent p.L311L 0.35 TCGA-IH-A3EA-01 19 12383821 12383821 C T ZNF44 Missense_Mutation p.G465R 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-IH-A3EA-01 19 12577583 12577583 A G ZNF709 Missense_Mutation p.Y29H 0.31 tolerated(0.05) probably_damaging(0.913) TCGA-IH-A3EA-01 19 12876772 12876772 G A HOOK2 Missense_Mutation p.A523V 0.33 deleterious(0.04) possibly_damaging(0.592) TCGA-IH-A3EA-01 19 13211542 13211542 C T LYL1 Missense_Mutation p.G119E 0.41 tolerated(0.13) probably_damaging(0.999) TCGA-IH-A3EA-01 19 13409743 13409743 C T CACNA1A Missense_Mutation p.D902N 0.41 benign(0.329) TCGA-IH-A3EA-01 19 13915760 13915760 C T ZSWIM4 Silent p.A170A 0.28 TCGA-IH-A3EA-01 19 14141657 14141657 G A RLN3 Missense_Mutation p.G109E 0.37 deleterious(0.04) benign(0.393) TCGA-IH-A3EA-01 19 1461050 1461050 C T APC2 Silent p.I512I 0.45 TCGA-IH-A3EA-01 19 15124517 15124517 G A CCDC105 Missense_Mutation p.E202K 0.31 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 19 15795656 15795656 G A CYP4F12 Missense_Mutation p.D317N 0.30 deleterious(0.01) possibly_damaging(0.795) TCGA-IH-A3EA-01 19 15807749 15807749 G A CYP4F12 Missense_Mutation p.E477K 0.25 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 19 15905399 15905399 G A OR10H5 Missense_Mutation p.V181M 0.33 tolerated(0.53) benign(0.269) TCGA-IH-A3EA-01 19 16000503 16000503 C T CYP4F2 Silent p.E216E 0.35 TCGA-IH-A3EA-01 19 16860187 16860187 C T NWD1 Missense_Mutation p.P245L 0.39 deleterious(0.01) benign(0.375) TCGA-IH-A3EA-01 19 16860627 16860627 C T NWD1 Nonsense_Mutation p.Q392* 0.25 TCGA-IH-A3EA-01 19 16908678 16908678 C T NWD1 Missense_Mutation p.S1147F 0.33 deleterious(0) possibly_damaging(0.865) TCGA-IH-A3EA-01 19 16918765 16918765 G A NWD1 Missense_Mutation p.G1369R 0.31 deleterious(0.01) possibly_damaging(0.816) TCGA-IH-A3EA-01 19 17100519 17100519 G A CPAMD8 Silent p.S490S 0.36 TCGA-IH-A3EA-01 19 17370816 17370816 C T USHBP1 Missense_Mutation p.D220N 0.16 tolerated(0.1) benign(0.009) TCGA-IH-A3EA-01 19 17373620 17373620 G A USHBP1 Missense_Mutation p.S128F 0.22 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 19 17487808 17487808 G A PLVAP Missense_Mutation p.A97V 0.35 deleterious(0.02) benign(0.446) TCGA-IH-A3EA-01 19 19655417 19655417 C T CILP2 Missense_Mutation p.T688I 0.44 deleterious(0) probably_damaging(0.918) TCGA-IH-A3EA-01 19 22940978 22940978 G A ZNF99 Missense_Mutation p.S578L 0.29 tolerated(0.05) probably_damaging(0.999) TCGA-IH-A3EA-01 19 2759288 2759288 G A SGTA Missense_Mutation p.S235L 0.38 deleterious(0.02) benign(0.295) TCGA-IH-A3EA-01 19 30935454 30935454 G A ZNF536 Missense_Mutation p.A329T 0.40 tolerated(0.55) possibly_damaging(0.524) TCGA-IH-A3EA-01 19 31040238 31040238 C T ZNF536 Missense_Mutation p.L1238F 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-IH-A3EA-01 19 31769975 31769975 C T TSHZ3 Missense_Mutation p.D242N 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-IH-A3EA-01 19 33493245 33493245 G A RHPN2 Missense_Mutation p.P338L 0.25 deleterious(0.01) possibly_damaging(0.651) TCGA-IH-A3EA-01 19 35434348 35434348 G A ZNF30 Missense_Mutation p.G161R 0.33 tolerated(0.63) probably_damaging(0.93) TCGA-IH-A3EA-01 19 35449554 35449554 G A ZNF792 Missense_Mutation p.S402F 0.23 tolerated(0.25) probably_damaging(0.998) TCGA-IH-A3EA-01 19 35506837 35506837 C T GRAMD1A Silent p.F393F 0.47 TCGA-IH-A3EA-01 19 35524582 35524582 C T SCN1B Silent p.F129F 0.41 TCGA-IH-A3EA-01 19 35551645 35551645 C T HPN Silent p.P245P 0.41 TCGA-IH-A3EA-01 19 3557238 3557238 G A MFSD12 Missense_Mutation p.S55F 0.29 probably_damaging(0.972) TCGA-IH-A3EA-01 19 35793411 35793411 C T MAG Missense_Mutation p.S344F 0.36 deleterious(0) probably_damaging(0.96) TCGA-IH-A3EA-01 19 36018411 36018411 C T SBSN Missense_Mutation p.G258E 0.38 tolerated(1) probably_damaging(0.988) TCGA-IH-A3EA-01 19 36108086 36108086 C T HAUS5 Silent p.P182P 0.17 TCGA-IH-A3EA-01 19 36236335 36236335 C T PSENEN 5'UTR 0.26 TCGA-IH-A3EA-01 19 36277934 36277934 G A ARHGAP33 Silent p.Q693Q 0.44 TCGA-IH-A3EA-01 19 37253237 37253237 T A ZNF850 Missense_Mutation p.M37L 0.50 tolerated(1) benign(0.03) TCGA-IH-A3EA-01 19 37975326 37975326 C T ZNF570 Missense_Mutation p.H268Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-IH-A3EA-01 19 38028704 38028704 C T ZNF793 Missense_Mutation p.L382F 0.24 tolerated(0.32) probably_damaging(0.999) TCGA-IH-A3EA-01 19 38935245 38935245 G A RYR1 Missense_Mutation p.E187K 0.38 possibly_damaging(0.707) TCGA-IH-A3EA-01 19 39051792 39051792 C T RYR1 Nonsense_Mutation p.Q4108* 0.28 TCGA-IH-A3EA-01 19 3909578 3909578 G C ATCAY Missense_Mutation p.G248R 0.40 tolerated(0.06) possibly_damaging(0.7) TCGA-IH-A3EA-01 19 39866396 39866396 C T SAMD4B Silent p.A258A 0.37 TCGA-IH-A3EA-01 19 40364065 40364065 G A FCGBP Silent p.N4859N 0.08 TCGA-IH-A3EA-01 19 40478366 40478366 C T PSMC4 Nonsense_Mutation p.Q76* 0.35 TCGA-IH-A3EA-01 19 40832354 40832354 G A C19orf47 Missense_Mutation p.P197L 0.46 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 19 40901894 40901894 C T PRX Missense_Mutation p.A789T 0.35 tolerated(0.14) possibly_damaging(0.682) TCGA-IH-A3EA-01 19 40947780 40947780 G A SERTAD3 Missense_Mutation p.R70C 0.22 tolerated(0.1) benign(0) TCGA-IH-A3EA-01 19 41174000 41174000 G A NUMBL Silent p.A401A 0.40 TCGA-IH-A3EA-01 19 41601683 41601683 G A CYP2A13 Missense_Mutation p.G441E 0.34 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 19 41763489 41763489 G A AXL Missense_Mutation p.R763H 0.36 deleterious(0.02) probably_damaging(0.957) TCGA-IH-A3EA-01 19 42848946 42848946 C T MEGF8 Silent p.L686L 0.27 TCGA-IH-A3EA-01 19 42931279 42931279 A T LIPE Missense_Mutation p.V8E 0.45 deleterious_low_confidence(0.04) benign(0.206) TCGA-IH-A3EA-01 19 43579648 43579648 C T PSG2 Missense_Mutation p.M189I 0.39 tolerated(0.23) benign(0.006) TCGA-IH-A3EA-01 19 44223386 44223386 C T IRGC Missense_Mutation p.P226S 0.29 tolerated(0.26) probably_damaging(1) TCGA-IH-A3EA-01 19 44832440 44832440 C T ZNF112 Missense_Mutation p.V630I 0.37 tolerated(0.22) possibly_damaging(0.9) TCGA-IH-A3EA-01 19 45026797 45026797 G A CEACAM20 RNA 0.27 TCGA-IH-A3EA-01 19 45317449 45317449 C T BCAM Silent p.S275S 0.53 TCGA-IH-A3EA-01 19 45381731 45381731 G A PVRL2 Intron 0.60 TCGA-IH-A3EA-01 19 45997989 45997989 G A RTN2 Silent p.S118S 0.35 TCGA-IH-A3EA-01 19 45997990 45997990 G A RTN2 Missense_Mutation p.S118F 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IH-A3EA-01 19 46825222 46825222 C T HIF3A Missense_Mutation p.S445L 0.52 tolerated(0.11) benign(0.001) TCGA-IH-A3EA-01 19 47259901 47259901 C T FKRP Silent p.V398V 0.38 TCGA-IH-A3EA-01 19 49520340 49520340 C T RUVBL2 3'Flank 0.36 TCGA-IH-A3EA-01 19 49671293 49671293 C T TRPM4 Silent p.V129V 0.38 TCGA-IH-A3EA-01 19 50086495 50086495 C T PRRG2 Silent p.L7L 0.46 TCGA-IH-A3EA-01 19 50100062 50100062 C T PRR12 Missense_Mutation p.L824F 0.47 possibly_damaging(0.765) TCGA-IH-A3EA-01 19 50157994 50157994 C T SCAF1 Missense_Mutation p.S1162F 0.37 possibly_damaging(0.683) TCGA-IH-A3EA-01 19 50461704 50461704 C T SIGLEC11 Missense_Mutation p.G496E 0.37 deleterious(0.02) probably_damaging(0.967) TCGA-IH-A3EA-01 19 50957612 50957612 G A MYBPC2 Missense_Mutation p.G667E 0.26 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 19 51129154 51129154 C T SYT3 Missense_Mutation p.D468N 0.19 deleterious(0.03) possibly_damaging(0.887) TCGA-IH-A3EA-01 19 51129274 51129274 C T SYT3 Missense_Mutation p.E428K 0.42 deleterious(0) possibly_damaging(0.793) TCGA-IH-A3EA-01 19 51135641 51135641 C T SYT3 Silent p.G192G 0.28 TCGA-IH-A3EA-01 19 51295018 51295018 A T ACPT Missense_Mutation p.R137W 0.35 deleterious(0) possibly_damaging(0.907) TCGA-IH-A3EA-01 19 51410226 51410226 G A KLK4 Silent p.F243F 0.30 TCGA-IH-A3EA-01 19 51470516 51470516 G A KLK6 Nonsense_Mutation p.Q36* 0.38 TCGA-IH-A3EA-01 19 51914270 51914270 G A SIGLEC10 3'UTR 0.31 TCGA-IH-A3EA-01 19 52132655 52132655 C T SIGLEC5 Missense_Mutation p.G219E 0.34 tolerated(0.22) benign(0.38) TCGA-IH-A3EA-01 19 52327032 52327032 G A FPR3 Missense_Mutation p.E11K 0.50 tolerated(0.86) benign(0.005) TCGA-IH-A3EA-01 19 52327730 52327730 C T FPR3 Silent p.F243F 0.35 TCGA-IH-A3EA-01 19 52519426 52519426 T A ZNF614 Missense_Mutation p.R475S 0.38 deleterious(0) possibly_damaging(0.815) TCGA-IH-A3EA-01 19 5274318 5274318 G A PTPRS Silent p.I43I 0.28 TCGA-IH-A3EA-01 19 53612104 53612104 G A ZNF415 Silent p.S398S 0.31 TCGA-IH-A3EA-01 19 54178988 54178988 G A MIR520E RNA 0.27 TCGA-IH-A3EA-01 19 54760009 54760009 G A LILRB5 Silent p.P184P 0.37 TCGA-IH-A3EA-01 19 55014950 55014950 G A LAIR2 Silent p.E23E 0.28 TCGA-IH-A3EA-01 19 55143386 55143386 G A LILRB1 Missense_Mutation p.G120E 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-IH-A3EA-01 19 55147167 55147167 G C LILRB1 Intron 0.35 TCGA-IH-A3EA-01 19 56321518 56321518 C T NLRP11 Missense_Mutation p.G153E 0.42 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 19 56329471 56329471 G A NLRP11 Nonsense_Mutation p.Q24* 0.36 TCGA-IH-A3EA-01 19 56370100 56370100 C T NLRP4 Silent p.S447S 0.38 TCGA-IH-A3EA-01 19 56459573 56459573 C T NLRP8 Missense_Mutation p.S102L 0.31 tolerated(0.68) benign(0.006) TCGA-IH-A3EA-01 19 56465910 56465910 C T NLRP8 Silent p.F162F 0.36 TCGA-IH-A3EA-01 19 56515104 56515104 C T NLRP5 Missense_Mutation p.P29S 0.27 tolerated_low_confidence(0.07) benign(0.133) TCGA-IH-A3EA-01 19 56935700 56935700 C G ZNF583 Nonsense_Mutation p.S558* 0.33 TCGA-IH-A3EA-01 19 57176338 57176338 C T ZNF835 Missense_Mutation p.D77N 0.42 tolerated(0.26) benign(0.001) TCGA-IH-A3EA-01 19 57176461 57176461 C A ZNF835 Nonsense_Mutation p.E36* 0.31 TCGA-IH-A3EA-01 19 57648286 57648286 C T ZIM3 Missense_Mutation p.E66K 0.31 tolerated(0.06) benign(0.026) TCGA-IH-A3EA-01 19 58420091 58420091 G A ZNF417 Missense_Mutation p.P519S 0.24 deleterious(0.01) possibly_damaging(0.701) TCGA-IH-A3EA-01 19 5844280 5844280 C T FUT3 Missense_Mutation p.E191K 0.28 tolerated(1) benign(0.002) TCGA-IH-A3EA-01 19 58489652 58489652 G A ZNF606 3'UTR 0.41 TCGA-IH-A3EA-01 19 58565236 58565236 G A ZSCAN1 Silent p.R348R 0.15 TCGA-IH-A3EA-01 19 58579062 58579062 C T ZNF135 Missense_Mutation p.H428Y 0.25 deleterious(0) probably_damaging(0.993) TCGA-IH-A3EA-01 19 58846468 58846468 G A ZSCAN22 Silent p.A100A 0.07 TCGA-IH-A3EA-01 19 58946342 58946342 G A ZNF132 Missense_Mutation p.L157F 0.29 tolerated(0.61) benign(0.005) TCGA-IH-A3EA-01 19 58946343 58946343 G A ZNF132 Silent p.N156N 0.30 TCGA-IH-A3EA-01 19 6833197 6833197 C T VAV1 Missense_Mutation p.S504F 0.28 deleterious(0) probably_damaging(0.994) TCGA-IH-A3EA-01 19 6990791 6990791 G A EMR4P RNA 0.21 TCGA-IH-A3EA-01 19 6990792 6990792 G A EMR4P RNA 0.22 TCGA-IH-A3EA-01 19 8145963 8145963 G A FBN3 Silent p.F2459F 0.26 TCGA-IH-A3EA-01 19 8576415 8576415 C T ZNF414 Missense_Mutation p.G294S 0.20 tolerated(0.45) possibly_damaging(0.689) TCGA-IH-A3EA-01 19 861753 861753 G A CFD Missense_Mutation p.V138M 0.21 tolerated(0.08) benign(0.283) TCGA-IH-A3EA-01 19 8656920 8656920 G A ADAMTS10 Missense_Mutation p.P552L 0.42 tolerated(0.29) benign(0.006) TCGA-IH-A3EA-01 19 8656921 8656921 G A ADAMTS10 Missense_Mutation p.P552S 0.43 tolerated(0.4) benign(0.006) TCGA-IH-A3EA-01 19 8841819 8841819 G A OR2Z1 Silent p.L143L 0.31 TCGA-IH-A3EA-01 19 9002624 9002624 G A MUC16 Missense_Mutation p.R13398C 0.38 probably_damaging(0.975) TCGA-IH-A3EA-01 19 9017418 9017418 G A MUC16 Silent p.L12636L 0.32 TCGA-IH-A3EA-01 19 9043442 9043442 C T MUC16 Nonsense_Mutation p.W12029* 0.36 TCGA-IH-A3EA-01 19 9047148 9047148 G A MUC16 Missense_Mutation p.P11495S 0.34 benign(0.001) TCGA-IH-A3EA-01 19 9047352 9047352 C T MUC16 Missense_Mutation p.G11427S 0.29 benign(0.003) TCGA-IH-A3EA-01 19 9056341 9056341 T G MUC16 Missense_Mutation p.S10369R 0.35 benign(0.016) TCGA-IH-A3EA-01 19 9057364 9057364 G A MUC16 Missense_Mutation p.P10028S 0.31 unknown(0) TCGA-IH-A3EA-01 19 9059844 9059844 G T MUC16 Missense_Mutation p.P9201Q 0.41 unknown(0) TCGA-IH-A3EA-01 19 9064314 9064314 G A MUC16 Missense_Mutation p.P7711L 0.43 unknown(0) TCGA-IH-A3EA-01 19 9064315 9064315 G A MUC16 Missense_Mutation p.P7711S 0.45 unknown(0) TCGA-IH-A3EA-01 19 9068444 9068444 G A MUC16 Silent p.I6334I 0.21 TCGA-IH-A3EA-01 19 9077510 9077510 G A MUC16 Silent p.S3312S 0.29 TCGA-IH-A3EA-01 19 9089000 9089000 T A MUC16 Missense_Mutation p.I939L 0.43 unknown(0) TCGA-IH-A3EA-01 19 9090748 9090748 G A MUC16 Missense_Mutation p.S356F 0.32 unknown(0) TCGA-IH-A3EA-01 19 9297013 9297013 C T OR7D2 Nonsense_Mutation p.Q186* 0.32 TCGA-IH-A3EA-01 19 9362277 9362277 C T OR7E24 Silent p.C186C 0.29 TCGA-IH-A3EA-01 19 9721101 9721101 C T ZNF561 Silent p.L412L 0.31 TCGA-IH-A3EA-01 19 9801409 9801409 G A ZNF812 Missense_Mutation p.S257F 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-IH-A3EA-01 1 100746847 100746847 C T RTCA Intron 0.29 TCGA-IH-A3EA-01 1 101185345 101185345 C T VCAM1 5'UTR 0.38 TCGA-IH-A3EA-01 1 109777952 109777952 C T SARS Silent p.L290L 0.42 TCGA-IH-A3EA-01 1 110258536 110258536 C T GSTM5 Intron 0.30 TCGA-IH-A3EA-01 1 110466781 110466781 G A CSF1 Missense_Mutation p.G513E 0.40 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 111061227 111061227 C T KCNA10 Silent p.T61T 0.34 TCGA-IH-A3EA-01 1 111957464 111957464 C T OVGP1 Silent p.Q553Q 0.34 TCGA-IH-A3EA-01 1 11300494 11300494 G A MTOR Missense_Mutation p.P551L 0.46 deleterious(0) possibly_damaging(0.738) TCGA-IH-A3EA-01 1 113057509 113057509 C T WNT2B Silent p.L66L 0.32 TCGA-IH-A3EA-01 1 114189206 114189206 C T MAGI3 Silent p.S699S 0.40 TCGA-IH-A3EA-01 1 114424588 114424588 G A BCL2L15 Missense_Mutation p.S94F 0.25 deleterious(0.03) benign(0.06) TCGA-IH-A3EA-01 1 115401232 115401232 G A SYCP1 Nonsense_Mutation p.W119* 0.19 TCGA-IH-A3EA-01 1 115576716 115576716 T A TSHB Missense_Mutation p.F95L 0.35 tolerated(0.06) benign(0.062) TCGA-IH-A3EA-01 1 116609685 116609685 G A SLC22A15 Missense_Mutation p.E534K 0.40 deleterious_low_confidence(0.05) benign(0.129) TCGA-IH-A3EA-01 1 116933447 116933447 C T ATP1A1 Silent p.S422S 0.34 TCGA-IH-A3EA-01 1 117504034 117504034 C T PTGFRN Silent p.S461S 0.29 TCGA-IH-A3EA-01 1 118581982 118581982 C G SPAG17 Missense_Mutation p.K1084N 0.33 tolerated(0.08) benign(0.023) TCGA-IH-A3EA-01 1 12144549 12144549 G A TNFRSF8 Missense_Mutation p.G31E 0.36 tolerated(0.45) benign(0.077) TCGA-IH-A3EA-01 1 1231121 1231121 G A ACAP3 Missense_Mutation p.S567F 0.53 deleterious(0) benign(0.281) TCGA-IH-A3EA-01 1 12820967 12820967 G A C1orf158 3'UTR 0.50 TCGA-IH-A3EA-01 1 12885137 12885137 G A PRAMEF11 Missense_Mutation p.S325F 0.41 deleterious(0.03) benign(0.031) TCGA-IH-A3EA-01 1 12888544 12888544 C T PRAMEF11 5'UTR 0.34 TCGA-IH-A3EA-01 1 12941908 12941908 C T PRAMEF4 Silent p.V214V 0.21 TCGA-IH-A3EA-01 1 12955423 12955423 C T PRAMEF10 Missense_Mutation p.D86N 0.40 deleterious(0.02) probably_damaging(0.969) TCGA-IH-A3EA-01 1 145562252 145562252 C T ANKRD35 Missense_Mutation p.S647F 0.36 deleterious(0.02) benign(0.032) TCGA-IH-A3EA-01 1 148009443 148009443 G C NBPF14 Missense_Mutation p.P628A 0.07 tolerated(0.2) possibly_damaging(0.728) TCGA-IH-A3EA-01 1 148932823 148932823 C T RP11-14N7.2 RNA 0.07 TCGA-IH-A3EA-01 1 149879677 149879677 G A SV2A Silent p.F487F 0.38 TCGA-IH-A3EA-01 1 149937753 149937753 G A OTUD7B Missense_Mutation p.P185S 0.35 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 1 150444338 150444338 C T RPRD2 Missense_Mutation p.R972C 0.39 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-IH-A3EA-01 1 150727607 150727607 G A CTSS Missense_Mutation p.S90F 0.30 deleterious(0.01) benign(0.229) TCGA-IH-A3EA-01 1 151062948 151062948 C T GABPB2 Nonsense_Mutation p.R59* 0.35 TCGA-IH-A3EA-01 1 151162562 151162562 G A VPS72 Silent p.T12T 0.42 TCGA-IH-A3EA-01 1 151377497 151377497 T A POGZ Silent p.S1338S 0.25 TCGA-IH-A3EA-01 1 152187696 152187696 C T HRNR Missense_Mutation p.G2137S 0.03 unknown(0) TCGA-IH-A3EA-01 1 152284394 152284394 C T FLG Missense_Mutation p.E990K 0.37 possibly_damaging(0.702) TCGA-IH-A3EA-01 1 152329602 152329602 C T FLG2 Silent p.G220G 0.30 TCGA-IH-A3EA-01 1 152484149 152484149 C T LCE5A Missense_Mutation p.P47S 0.33 tolerated_low_confidence(0.3) unknown(0) TCGA-IH-A3EA-01 1 152552033 152552033 G A LCE3D 3'UTR 0.29 TCGA-IH-A3EA-01 1 152770602 152770602 G A LCE1D Missense_Mutation p.G111E 0.27 unknown(0) TCGA-IH-A3EA-01 1 153633799 153633799 T A SNAPIN 3'UTR 0.33 TCGA-IH-A3EA-01 1 155186322 155186322 G A MTX1 3'Flank 0.35 TCGA-IH-A3EA-01 1 155206188 155206188 G A GBA Missense_Mutation p.P358S 0.44 tolerated(0.05) benign(0.148) TCGA-IH-A3EA-01 1 156146328 156146328 C T SEMA4A Missense_Mutation p.S609F 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-IH-A3EA-01 1 156571237 156571237 G A GPATCH4 5'UTR 0.19 TCGA-IH-A3EA-01 1 156925515 156925515 G A ARHGEF11 Missense_Mutation p.P583L 0.35 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 1 157504560 157504560 G A FCRL5 Missense_Mutation p.H509Y 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-IH-A3EA-01 1 157557276 157557276 C T FCRL4 Missense_Mutation p.E213K 0.40 tolerated(0.1) benign(0.077) TCGA-IH-A3EA-01 1 157667368 157667368 G A FCRL3 Intron 0.61 TCGA-IH-A3EA-01 1 15798551 15798551 G A CELA2A 3'UTR 0.31 TCGA-IH-A3EA-01 1 158389846 158389846 C T OR10K2 Missense_Mutation p.D271N 0.26 deleterious(0.04) probably_damaging(1) TCGA-IH-A3EA-01 1 158576999 158576999 C T OR10Z1 Silent p.F257F 0.31 TCGA-IH-A3EA-01 1 158654964 158654964 C T SPTA1 Silent p.G66G 0.33 TCGA-IH-A3EA-01 1 158725001 158725001 C T OR6K6 Silent p.F132F 0.30 TCGA-IH-A3EA-01 1 158815598 158815598 G A MNDA Silent p.K264K 0.44 TCGA-IH-A3EA-01 1 158908894 158908894 G T PYHIN1 Nonsense_Mutation p.E146* 0.35 TCGA-IH-A3EA-01 1 158911876 158911876 C T PYHIN1 Missense_Mutation p.S230F 0.33 deleterious(0) benign(0.004) TCGA-IH-A3EA-01 1 159857785 159857785 C T CCDC19 Missense_Mutation p.R145Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 1 159890279 159890279 T A TAGLN2 Silent p.A7A 0.35 TCGA-IH-A3EA-01 1 160260340 160260340 G A COPA Missense_Mutation p.P1195L 0.39 deleterious(0) probably_damaging(0.926) TCGA-IH-A3EA-01 1 160262956 160262956 C T COPA Silent p.R950R 0.34 TCGA-IH-A3EA-01 1 160388939 160388939 A T VANGL2 Missense_Mutation p.T114S 0.35 tolerated(0.28) benign(0.004) TCGA-IH-A3EA-01 1 160388940 160388940 C T VANGL2 Missense_Mutation p.T114I 0.35 tolerated(0.8) benign(0.002) TCGA-IH-A3EA-01 1 160535389 160535389 G A CD84 Missense_Mutation p.P65S 0.33 deleterious(0.01) benign(0.377) TCGA-IH-A3EA-01 1 160720152 160720152 C T SLAMF7 Silent p.L236L 0.30 TCGA-IH-A3EA-01 1 160720153 160720153 C T SLAMF7 Silent p.L237L 0.30 TCGA-IH-A3EA-01 1 161010101 161010101 G A USF1 Missense_Mutation p.S245F 0.33 deleterious(0) probably_damaging(0.99) TCGA-IH-A3EA-01 1 161275593 161275593 C T MPZ 3'UTR 0.33 TCGA-IH-A3EA-01 1 161596163 161596163 C T FCGR3B Missense_Mutation p.V153M 0.60 deleterious(0.04) possibly_damaging(0.801) TCGA-IH-A3EA-01 1 16377026 16377026 C T CLCNKB Silent p.S328S 0.32 TCGA-IH-A3EA-01 1 16525001 16525001 G A ARHGEF19 3'UTR 0.31 TCGA-IH-A3EA-01 1 166904703 166904703 C T ILDR2 Missense_Mutation p.G239R 0.23 deleterious(0) probably_damaging(0.964) TCGA-IH-A3EA-01 1 167823649 167823649 G A ADCY10 Silent p.L750L 0.38 TCGA-IH-A3EA-01 1 168510135 168510135 G A XCL2 3'UTR 0.46 TCGA-IH-A3EA-01 1 16902874 16902874 G A NBPF1 Silent p.L669L 0.06 TCGA-IH-A3EA-01 1 170952613 170952613 C T MROH9 Missense_Mutation p.P223S 0.29 tolerated(0.69) benign(0.003) TCGA-IH-A3EA-01 1 171958126 171958126 G A DNM3 Missense_Mutation p.V143M 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-IH-A3EA-01 1 173567119 173567119 G A SLC9C2 Missense_Mutation p.S94F 0.46 deleterious(0.03) possibly_damaging(0.876) TCGA-IH-A3EA-01 1 175292569 175292569 G A TNR Missense_Mutation p.P1334L 0.37 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 1 17599935 17599935 G A PADI3 Missense_Mutation p.R383K 0.31 tolerated(0.76) benign(0.006) TCGA-IH-A3EA-01 1 176760578 176760578 G A PAPPA2 Silent p.L1660L 0.38 TCGA-IH-A3EA-01 1 176992616 176992616 G A ASTN1 Silent p.S454S 0.38 TCGA-IH-A3EA-01 1 177001897 177001897 G A ASTN1 Missense_Mutation p.P187L 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.8) TCGA-IH-A3EA-01 1 177249674 177249674 C T BRINP2 Silent p.G454G 0.13 TCGA-IH-A3EA-01 1 179078330 179078330 G A ABL2 Missense_Mutation p.S691F 0.41 deleterious_low_confidence(0) benign(0.255) TCGA-IH-A3EA-01 1 179437784 179437784 C T AXDND1 Intron 0.18 TCGA-IH-A3EA-01 1 179604914 179604914 C T TDRD5 Missense_Mutation p.S471F 0.37 tolerated(0.12) benign(0.015) TCGA-IH-A3EA-01 1 181686434 181686434 C T CACNA1E Silent p.L507L 0.24 TCGA-IH-A3EA-01 1 181702805 181702805 G A CACNA1E Missense_Mutation p.D1061N 0.55 tolerated(0.2) possibly_damaging(0.539) TCGA-IH-A3EA-01 1 184764240 184764240 G A FAM129A Silent p.A886A 0.62 TCGA-IH-A3EA-01 1 18703912 18703912 G A IGSF21 Silent p.T440T 0.40 TCGA-IH-A3EA-01 1 190067151 190067151 A G BRINP3 Silent p.S766S 0.58 TCGA-IH-A3EA-01 1 196794676 196794676 C T CFHR1 Missense_Mutation p.S43F 0.77 tolerated(0.11) benign(0.361) TCGA-IH-A3EA-01 1 196879440 196879440 C T CFHR4 Nonsense_Mutation p.Q276* 0.47 TCGA-IH-A3EA-01 1 198685852 198685852 G A PTPRC Missense_Mutation p.D445N 0.56 tolerated(0.77) benign(0.001) TCGA-IH-A3EA-01 1 19981608 19981608 C T MINOS1-NBL1 Missense_Mutation p.P29S 0.38 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 1 200572378 200572378 G A KIF14 Missense_Mutation p.P652L 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 200974808 200974808 C T KIF21B Silent p.E154E 0.38 TCGA-IH-A3EA-01 1 201063015 201063015 G A CACNA1S Silent p.F131F 0.30 TCGA-IH-A3EA-01 1 201330287 201330287 G A TNNT2 Intron 0.32 TCGA-IH-A3EA-01 1 201465403 201465403 C G CSRP1 Missense_Mutation p.C10S 0.29 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 202128589 202128589 G A PTPN7 Intron 0.42 TCGA-IH-A3EA-01 1 202270330 202270330 C T LGR6 Missense_Mutation p.S299L 0.41 deleterious(0) probably_damaging(0.941) TCGA-IH-A3EA-01 1 204931241 204931241 C T NFASC Intron 0.28 TCGA-IH-A3EA-01 1 205022330 205022330 G A CNTN2 Missense_Mutation p.R6K 0.28 tolerated_low_confidence(0.49) benign(0.014) TCGA-IH-A3EA-01 1 205308379 205308379 G A KLHDC8A Missense_Mutation p.R234C 0.23 deleterious(0.02) possibly_damaging(0.608) TCGA-IH-A3EA-01 1 205495565 205495565 C T CDK18 Silent p.S244S 0.34 TCGA-IH-A3EA-01 1 206711542 206711542 C T RASSF5 Nonsense_Mutation p.Q167* 0.33 TCGA-IH-A3EA-01 1 207195977 207195977 C T C1orf116 Missense_Mutation p.E378K 0.31 tolerated(0.22) benign(0.023) TCGA-IH-A3EA-01 1 209778994 209778994 A T CAMK1G Missense_Mutation p.N137I 0.44 tolerated(0.18) probably_damaging(0.999) TCGA-IH-A3EA-01 1 209788748 209788748 C T LAMB3 Missense_Mutation p.M1129I 0.42 tolerated(0.6) benign(0.003) TCGA-IH-A3EA-01 1 209800749 209800749 G A LAMB3 Silent p.S488S 0.45 TCGA-IH-A3EA-01 1 20981986 20981986 G A DDOST Silent p.A183A 0.39 TCGA-IH-A3EA-01 1 209968671 209968671 G A IRF6 Missense_Mutation p.P158S 0.38 tolerated(0.11) benign(0.039) TCGA-IH-A3EA-01 1 210012343 210012343 C T DIEXF Silent p.I384I 0.34 TCGA-IH-A3EA-01 1 215844624 215844624 C T USH2A Missense_Mutation p.R4608Q 0.36 benign(0.354) TCGA-IH-A3EA-01 1 216256831 216256831 G A USH2A Silent p.F1755F 0.36 TCGA-IH-A3EA-01 1 216258139 216258139 G A USH2A Missense_Mutation p.P1690S 0.43 benign(0.041) TCGA-IH-A3EA-01 1 216348660 216348660 G A USH2A Missense_Mutation p.R1521C 0.28 probably_damaging(0.97) TCGA-IH-A3EA-01 1 216496898 216496898 G A USH2A Missense_Mutation p.H490Y 0.34 benign(0.005) TCGA-IH-A3EA-01 1 216498906 216498906 C T USH2A Missense_Mutation p.R295K 0.38 benign(0.001) TCGA-IH-A3EA-01 1 216692542 216692542 C T ESRRG Missense_Mutation p.E374K 0.31 tolerated(0.19) probably_damaging(0.998) TCGA-IH-A3EA-01 1 223284787 223284787 C T TLR5 Silent p.R529R 0.36 TCGA-IH-A3EA-01 1 226108100 226108100 G A PYCR2 3'UTR 0.50 TCGA-IH-A3EA-01 1 228402711 228402711 G A OBSCN Silent p.A580A 0.62 TCGA-IH-A3EA-01 1 22848016 22848016 C T ZBTB40 Nonsense_Mutation p.R1026* 0.39 TCGA-IH-A3EA-01 1 22848105 22848105 C T ZBTB40 Silent p.F1055F 0.33 TCGA-IH-A3EA-01 1 230898459 230898459 G A CAPN9 Missense_Mutation p.D155N 0.49 tolerated(0.38) benign(0.025) TCGA-IH-A3EA-01 1 233394773 233394773 C T PCNXL2 Missense_Mutation p.E279K 0.27 deleterious_low_confidence(0.03) benign(0.166) TCGA-IH-A3EA-01 1 235715257 235715257 G A GNG4 3'UTR 0.28 TCGA-IH-A3EA-01 1 236918340 236918340 C T ACTN2 Nonsense_Mutation p.Q666* 0.30 TCGA-IH-A3EA-01 1 240071048 240071048 G A CHRM3 Silent p.L99L 0.34 TCGA-IH-A3EA-01 1 24122730 24122730 C T GALE Missense_Mutation p.R300Q 0.29 deleterious(0) probably_damaging(0.963) TCGA-IH-A3EA-01 1 24172303 24172303 C T FUCA1 Missense_Mutation p.D435N 0.28 tolerated(0.68) benign(0.002) TCGA-IH-A3EA-01 1 24201559 24201559 G A CNR2 Silent p.F183F 0.28 TCGA-IH-A3EA-01 1 243362492 243362492 A G CEP170 Silent p.I167I 0.21 TCGA-IH-A3EA-01 1 247587879 247587879 G A NLRP3 Silent p.R378R 0.31 TCGA-IH-A3EA-01 1 247588393 247588393 C T NLRP3 Missense_Mutation p.R550C 0.48 tolerated(0.12) benign(0) TCGA-IH-A3EA-01 1 247751934 247751934 C T OR2G2 Silent p.P91P 0.36 TCGA-IH-A3EA-01 1 247875172 247875172 C T OR6F1 Missense_Mutation p.E296K 0.37 tolerated(0.13) benign(0.03) TCGA-IH-A3EA-01 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.34 deleterious(0.04) benign(0.335) TCGA-IH-A3EA-01 1 248023992 248023992 G A TRIM58 Missense_Mutation p.G165E 0.27 tolerated(0.92) benign(0.025) TCGA-IH-A3EA-01 1 248263037 248263037 C T OR2L13 Silent p.D120D 0.35 TCGA-IH-A3EA-01 1 248263174 248263174 C T OR2L13 Missense_Mutation p.P166L 0.30 deleterious(0) probably_damaging(0.929) TCGA-IH-A3EA-01 1 248458620 248458620 A T OR2T12 Missense_Mutation p.N87K 0.16 tolerated(0.66) benign(0.001) TCGA-IH-A3EA-01 1 248737528 248737528 C T OR2T34 Silent p.R177R 0.34 TCGA-IH-A3EA-01 1 24979001 24979001 G A SRRM1 Missense_Mutation p.E268K 0.21 unknown(0) TCGA-IH-A3EA-01 1 2526745 2526745 C T MMEL1 Missense_Mutation p.M518I 0.30 tolerated(0.17) benign(0.002) TCGA-IH-A3EA-01 1 27950436 27950436 C T FGR 5'UTR 0.38 TCGA-IH-A3EA-01 1 28326479 28326479 C A EYA3 Missense_Mutation p.D359Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 1 31214502 31214502 C T LAPTM5 Silent p.L81L 0.38 TCGA-IH-A3EA-01 1 32050544 32050544 C T TINAGL1 Missense_Mutation p.S255L 0.37 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 33236975 33236975 C T KIAA1522 Missense_Mutation p.S732F 0.41 deleterious_low_confidence(0) unknown(0) TCGA-IH-A3EA-01 1 33547955 33547955 G A ADC Silent p.T35T 0.35 TCGA-IH-A3EA-01 1 33954146 33954146 C T ZSCAN20 Missense_Mutation p.P167S 0.23 tolerated(0.83) benign(0) TCGA-IH-A3EA-01 1 33959884 33959884 G A ZSCAN20 Missense_Mutation p.G647E 0.40 tolerated(0.15) possibly_damaging(0.662) TCGA-IH-A3EA-01 1 33988985 33988985 G A CSMD2 Silent p.L3333L 0.36 TCGA-IH-A3EA-01 1 34052167 34052167 C T CSMD2 Missense_Mutation p.E2332K 0.37 tolerated(0.08) benign(0.217) TCGA-IH-A3EA-01 1 35334316 35334316 G A DLGAP3 Missense_Mutation p.P792L 0.43 tolerated(0.24) possibly_damaging(0.583) TCGA-IH-A3EA-01 1 36315815 36315815 C T AGO4 Missense_Mutation p.P745S 0.43 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 1 36367910 36367910 C T AGO1 Nonsense_Mutation p.Q457* 0.30 TCGA-IH-A3EA-01 1 36564386 36564386 C T COL8A2 Missense_Mutation p.G299E 0.17 deleterious(0) unknown(0) TCGA-IH-A3EA-01 1 3701755 3701755 C T LRRC47 Missense_Mutation p.E364K 0.31 deleterious(0.01) possibly_damaging(0.804) TCGA-IH-A3EA-01 1 40092319 40092319 G A HEYL Missense_Mutation p.P283S 0.40 tolerated(0.42) benign(0.003) TCGA-IH-A3EA-01 1 43308638 43308638 C T ERMAP Missense_Mutation p.S388F 0.33 tolerated(0.08) benign(0.443) TCGA-IH-A3EA-01 1 47279916 47279916 G A CYP4B1 Missense_Mutation p.D271N 0.52 tolerated(0.54) benign(0.039) TCGA-IH-A3EA-01 1 47402346 47402346 C T CYP4A11 Missense_Mutation p.R167Q 0.61 tolerated(0.71) benign(0.015) TCGA-IH-A3EA-01 1 47564867 47564867 C T CYP4Z1 Silent p.I326I 0.43 TCGA-IH-A3EA-01 1 47608985 47608985 C T CYP4A22 Silent p.V185V 0.25 TCGA-IH-A3EA-01 1 47611580 47611580 C T CYP4A22 Missense_Mutation p.P422L 0.39 deleterious(0.04) benign(0.443) TCGA-IH-A3EA-01 1 47611850 47611850 G A CYP4A22 Intron 0.36 TCGA-IH-A3EA-01 1 4772150 4772150 G A AJAP1 Missense_Mutation p.V74I 0.40 tolerated(0.81) benign(0) TCGA-IH-A3EA-01 1 48698086 48698086 G A SLC5A9 Silent p.K340K 0.24 TCGA-IH-A3EA-01 1 52854939 52854939 G A ORC1 Silent p.I379I 0.38 TCGA-IH-A3EA-01 1 55119800 55119800 G A MROH7 Missense_Mutation p.D401N 0.44 tolerated_low_confidence(0.06) benign(0.02) TCGA-IH-A3EA-01 1 55282712 55282712 G A C1orf177 Silent p.K367K 0.26 TCGA-IH-A3EA-01 1 56977713 56977713 G A PPAP2B Missense_Mutation p.H249Y 0.42 tolerated(1) benign(0.028) TCGA-IH-A3EA-01 1 57258104 57258104 C T C1orf168 Missense_Mutation p.E128K 0.26 tolerated(0.34) benign(0.046) TCGA-IH-A3EA-01 1 57347201 57347201 G A C8A Missense_Mutation p.G183E 0.27 deleterious(0) probably_damaging(0.978) TCGA-IH-A3EA-01 1 57378177 57378177 C T C8A Silent p.F494F 0.37 TCGA-IH-A3EA-01 1 57611094 57611094 G A DAB1 Missense_Mutation p.R26C 0.34 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 1 62677114 62677114 G A L1TD1 3'UTR 0.32 TCGA-IH-A3EA-01 1 6688564 6688564 C T THAP3 Missense_Mutation p.P27L 0.36 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 68906550 68906550 G A RPE65 Missense_Mutation p.P210L 0.40 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 1 70505242 70505242 A G LRRC7 Silent p.T1207T 0.46 TCGA-IH-A3EA-01 1 75038009 75038009 C T C1orf173 Missense_Mutation p.E1129K 0.34 tolerated(0.4) benign(0.308) TCGA-IH-A3EA-01 1 75078455 75078455 G A C1orf173 Missense_Mutation p.P347S 0.24 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 1 75086573 75086573 G A C1orf173 Missense_Mutation p.S282F 0.32 deleterious(0.02) possibly_damaging(0.844) TCGA-IH-A3EA-01 1 75606725 75606725 C T LHX8 Missense_Mutation p.S108F 0.32 tolerated(0.05) possibly_damaging(0.578) TCGA-IH-A3EA-01 1 75704305 75704305 G A SLC44A5 Silent p.F183F 0.26 TCGA-IH-A3EA-01 1 78392164 78392164 G A NEXN Missense_Mutation p.M185I 0.16 tolerated(1) benign(0) TCGA-IH-A3EA-01 1 79402010 79402010 G A ELTD1 Missense_Mutation p.P283S 0.30 tolerated(0.28) benign(0.256) TCGA-IH-A3EA-01 1 84768944 84768944 G A SAMD13 Silent p.K23K 0.33 TCGA-IH-A3EA-01 1 86590585 86590585 T G COL24A1 Silent p.L478L 0.34 TCGA-IH-A3EA-01 1 90179192 90179192 C T LRRC8C Missense_Mutation p.R355C 0.41 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 1 90400284 90400284 C T LRRC8D Missense_Mutation p.P553S 0.31 deleterious(0.02) probably_damaging(1) TCGA-IH-A3EA-01 1 94564359 94564359 G A ABCA4 Silent p.L253L 0.28 TCGA-IH-A3EA-01 1 94668094 94668094 C T ARHGAP29 Intron 0.34 TCGA-IH-A3EA-01 1 97915703 97915703 G A DPYD Missense_Mutation p.S606F 0.32 deleterious(0) probably_damaging(0.945) TCGA-IH-A3EA-01 1 98187204 98187204 C T DPYD Missense_Mutation p.M115I 0.28 tolerated(0.23) benign(0.004) TCGA-IH-A3EA-01 20 12989882 12989882 G A SPTLC3 5'UTR 0.32 TCGA-IH-A3EA-01 20 16729619 16729619 G T OTOR Nonsense_Mutation p.E75* 0.29 TCGA-IH-A3EA-01 20 17475250 17475250 G A BFSP1 Silent p.I489I 0.32 TCGA-IH-A3EA-01 20 20033154 20033154 C T CRNKL1 Missense_Mutation p.A106T 0.25 tolerated_low_confidence(0.78) benign(0) TCGA-IH-A3EA-01 20 23669535 23669535 C T CST4 Silent p.K24K 0.28 TCGA-IH-A3EA-01 20 24988464 24988464 G A ACSS1 Silent p.P668P 0.36 TCGA-IH-A3EA-01 20 30064458 30064458 C T REM1 Silent p.S70S 0.28 TCGA-IH-A3EA-01 20 31625434 31625434 C T BPIFB6 Missense_Mutation p.P246S 0.28 tolerated(0.08) probably_damaging(0.952) TCGA-IH-A3EA-01 20 33329591 33329591 G A NCOA6 Missense_Mutation p.S1490L 0.42 probably_damaging(0.957) TCGA-IH-A3EA-01 20 33530695 33530695 G A GSS Intron 0.50 TCGA-IH-A3EA-01 20 33584448 33584448 G T MYH7B Silent p.L1093L 0.14 TCGA-IH-A3EA-01 20 34611578 34611578 C T CNBD2 Silent p.L438L 0.45 TCGA-IH-A3EA-01 20 35262980 35262980 G A SLA2 Missense_Mutation p.A35V 0.26 tolerated(0.51) benign(0.008) TCGA-IH-A3EA-01 20 3526473 3526473 T GG ATRN Frame_Shift_Ins p.Y225Gfs*8 0.23 TCGA-IH-A3EA-01 20 37546995 37546995 G A PPP1R16B Missense_Mutation p.D464N 0.30 tolerated(0.08) benign(0.012) TCGA-IH-A3EA-01 20 3766858 3766858 G A CENPB Silent p.A91A 0.28 TCGA-IH-A3EA-01 20 39794419 39794419 C T PLCG1 Silent p.L584L 0.27 TCGA-IH-A3EA-01 20 40122212 40122212 T C CHD6 Missense_Mutation p.E427G 0.33 deleterious(0.02) benign(0.363) TCGA-IH-A3EA-01 20 40980848 40980848 C T PTPRT Silent p.R546R 0.33 TCGA-IH-A3EA-01 20 41306738 41306738 G A PTPRT Silent p.I307I 0.38 TCGA-IH-A3EA-01 20 42338659 42338659 C T MYBL2 Missense_Mutation p.P521L 0.32 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 20 43933302 43933302 G A MATN4 Missense_Mutation p.A70V 0.32 possibly_damaging(0.903) TCGA-IH-A3EA-01 20 44180676 44180676 G A WFDC8 Missense_Mutation p.P239S 0.27 deleterious(0.05) possibly_damaging(0.682) TCGA-IH-A3EA-01 20 44670039 44670039 G A SLC12A5 Missense_Mutation p.G332E 0.28 tolerated(0.5) benign(0.012) TCGA-IH-A3EA-01 20 45130893 45130893 G A ZNF334 Missense_Mutation p.S362L 0.34 deleterious(0.02) possibly_damaging(0.806) TCGA-IH-A3EA-01 20 45242402 45242402 C T SLC13A3 Intron 0.40 TCGA-IH-A3EA-01 20 46264143 46264143 C T NCOA3 Missense_Mutation p.S397L 0.48 deleterious(0.01) benign(0.154) TCGA-IH-A3EA-01 20 47770481 47770481 A G STAU1 Silent p.A111A 0.26 TCGA-IH-A3EA-01 20 48263558 48263558 G A B4GALT5 Missense_Mutation p.P103L 0.31 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 20 50701142 50701142 G A ZFP64 Missense_Mutation p.S631F 0.39 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-IH-A3EA-01 20 51871324 51871324 C T TSHZ2 Missense_Mutation p.P443S 0.29 tolerated(0.17) benign(0.004) TCGA-IH-A3EA-01 20 54823857 54823857 G A MC3R 5'UTR 0.34 TCGA-IH-A3EA-01 20 55033569 55033569 C T CASS4 Silent p.V709V 0.33 TCGA-IH-A3EA-01 20 56227540 56227540 C T PMEPA1 Missense_Mutation p.D145N 0.29 tolerated(0.12) probably_damaging(0.928) TCGA-IH-A3EA-01 20 57828183 57828183 G A ZNF831 Missense_Mutation p.R1393Q 0.33 tolerated(0.65) benign(0.03) TCGA-IH-A3EA-01 20 58562505 58562505 C T CDH26 Intron 0.22 TCGA-IH-A3EA-01 20 5904360 5904360 C T CHGB Missense_Mutation p.P524S 0.31 tolerated(0.14) possibly_damaging(0.725) TCGA-IH-A3EA-01 20 61537154 61537154 A G DIDO1 Intron 0.33 TCGA-IH-A3EA-01 20 61959705 61959705 C T COL20A1 Silent p.S1212S 0.18 TCGA-IH-A3EA-01 20 62038078 62038078 A C KCNQ2 Missense_Mutation p.C846W 0.30 deleterious(0.05) probably_damaging(0.989) TCGA-IH-A3EA-01 20 62038120 62038120 G C KCNQ2 Silent p.P832P 0.26 TCGA-IH-A3EA-01 20 62039782 62039782 C T KCNQ2 Missense_Mutation p.G624E 0.53 tolerated(0.08) probably_damaging(0.984) TCGA-IH-A3EA-01 20 62378384 62378384 G A ZBTB46 Missense_Mutation p.P557S 0.36 tolerated(0.74) benign(0.021) TCGA-IH-A3EA-01 20 7920973 7920973 C T HAO1 Missense_Mutation p.D33N 0.36 tolerated(0.07) benign(0.026) TCGA-IH-A3EA-01 20 853498 853498 G T ANGPT4 3'UTR 0.36 TCGA-IH-A3EA-01 21 10906979 10906979 G A TPTE Missense_Mutation p.P528S 0.15 tolerated(0.74) benign(0.03) TCGA-IH-A3EA-01 21 11049535 11049535 G A BAGE2 RNA 0.08 TCGA-IH-A3EA-01 21 15352118 15352118 C G ANKRD20A11P RNA 0.26 TCGA-IH-A3EA-01 21 15592017 15592017 G A RBM11 Missense_Mutation p.G77E 0.42 deleterious(0.01) possibly_damaging(0.905) TCGA-IH-A3EA-01 21 16337700 16337700 C T NRIP1 Silent p.Q938Q 0.33 TCGA-IH-A3EA-01 21 17199318 17199318 C T USP25 Silent p.L497L 0.30 TCGA-IH-A3EA-01 21 31744195 31744195 C T KRTAP13-2 Missense_Mutation p.G113R 0.34 tolerated(0.06) possibly_damaging(0.651) TCGA-IH-A3EA-01 21 31812716 31812716 C T KRTAP15-1 Missense_Mutation p.S24F 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-IH-A3EA-01 21 33044051 33044051 C A SCAF4 Missense_Mutation p.R1035S 0.28 unknown(0) TCGA-IH-A3EA-01 21 33340583 33340583 C T HUNK Missense_Mutation p.S299F 0.22 deleterious(0.04) probably_damaging(0.944) TCGA-IH-A3EA-01 21 35247658 35247658 A C ITSN1 Missense_Mutation p.I1392L 0.45 deleterious(0.02) probably_damaging(0.968) TCGA-IH-A3EA-01 21 39086771 39086771 G A KCNJ6 Missense_Mutation p.S230F 0.27 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 21 40194662 40194662 G A ETS2 Missense_Mutation p.G420D 0.33 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 21 41427717 41427717 C T DSCAM Missense_Mutation p.R1657Q 0.31 deleterious(0.05) probably_damaging(0.98) TCGA-IH-A3EA-01 21 41725439 41725439 G A DSCAM Missense_Mutation p.S296F 0.37 tolerated(0.05) benign(0.148) TCGA-IH-A3EA-01 21 44180998 44180998 C T PDE9A Missense_Mutation p.H356Y 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 21 44840909 44840909 G A SIK1 Silent p.I243I 0.30 TCGA-IH-A3EA-01 21 46011861 46011861 A G KRTAP10-6 Missense_Mutation p.S169P 0.51 tolerated(0.15) unknown(0) TCGA-IH-A3EA-01 21 46309222 46309222 G A ITGB2 Missense_Mutation p.P616S 0.48 tolerated(0.17) possibly_damaging(0.457) TCGA-IH-A3EA-01 21 47549037 47549037 G A COL6A2 Intron 0.67 TCGA-IH-A3EA-01 22 16256664 16256664 T C POTEH 3'UTR 0.22 TCGA-IH-A3EA-01 22 17072509 17072509 C T CCT8L2 Missense_Mutation p.G311D 0.18 tolerated(0.1) benign(0.219) TCGA-IH-A3EA-01 22 17444633 17444633 C T GAB4 Silent p.L521L 0.13 TCGA-IH-A3EA-01 22 18300864 18300864 G A MICAL3 Silent p.P1521P 0.16 TCGA-IH-A3EA-01 22 19036100 19036100 G A DGCR2 Missense_Mutation p.P287S 0.56 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 22 21106004 21106004 G A PI4KA Silent p.T1009T 0.18 TCGA-IH-A3EA-01 22 22782361 22782361 G A IGLV5-37 Missense_Mutation p.S120N 0.57 tolerated(0.4) benign(0.005) TCGA-IH-A3EA-01 22 23406278 23406278 G A RTDR1 Missense_Mutation p.S152F 0.22 deleterious(0) possibly_damaging(0.641) TCGA-IH-A3EA-01 22 24452754 24452754 G A CABIN1 Missense_Mutation p.R398Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-IH-A3EA-01 22 24718051 24718051 C T SPECC1L Missense_Mutation p.S368F 0.53 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 22 24836677 24836677 G A ADORA2A Silent p.K153K 0.55 TCGA-IH-A3EA-01 22 24896075 24896075 G A UPB1 Silent p.R35R 0.22 TCGA-IH-A3EA-01 22 26860656 26860656 G A HPS4 Missense_Mutation p.P314S 0.22 tolerated(0.2) benign(0.067) TCGA-IH-A3EA-01 22 29754757 29754757 G A AP1B1 Silent p.F161F 0.17 TCGA-IH-A3EA-01 22 30985180 30985180 A G PES1 Silent p.F34F 0.14 TCGA-IH-A3EA-01 22 31532757 31532757 G A PLA2G3 Missense_Mutation p.P410S 0.43 tolerated(0.34) benign(0.21) TCGA-IH-A3EA-01 22 31597595 31597595 C T RNF185 Missense_Mutation p.P159S 0.20 tolerated(0.83) benign(0.004) TCGA-IH-A3EA-01 22 31644754 31644754 C T LIMK2 Missense_Mutation p.R18W 0.28 deleterious(0) probably_damaging(0.993) TCGA-IH-A3EA-01 22 32011172 32011172 C T SFI1 Silent p.G1069G 0.26 TCGA-IH-A3EA-01 22 32099612 32099612 A G PRR14L Missense_Mutation p.V1975A 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-IH-A3EA-01 22 32794048 32794048 G A RTCB Nonsense_Mutation p.Q232* 0.25 TCGA-IH-A3EA-01 22 36055365 36055365 C T APOL6 Missense_Mutation p.L252F 0.24 deleterious(0) probably_damaging(0.967) TCGA-IH-A3EA-01 22 36123192 36123192 C T APOL5 Silent p.S359S 0.51 TCGA-IH-A3EA-01 22 37333503 37333503 G A CSF2RB Silent p.G551G 0.64 TCGA-IH-A3EA-01 22 37425309 37425309 C T MPST Silent p.F236F 0.32 TCGA-IH-A3EA-01 22 37465198 37465198 G A TMPRSS6 Silent p.R685R 0.36 TCGA-IH-A3EA-01 22 37688708 37688708 C T CYTH4 Silent p.I22I 0.49 TCGA-IH-A3EA-01 22 38212210 38212210 C G GCAT Missense_Mutation p.F356L 0.36 deleterious(0.01) probably_damaging(0.914) TCGA-IH-A3EA-01 22 38525521 38525521 C A PLA2G6 Missense_Mutation p.V376L 0.56 tolerated(0.14) benign(0.381) TCGA-IH-A3EA-01 22 39078419 39078419 C T TOMM22 Missense_Mutation p.S70F 0.22 deleterious(0.03) benign(0.166) TCGA-IH-A3EA-01 22 39814834 39814834 C T TAB1 Silent p.F216F 0.20 TCGA-IH-A3EA-01 22 39814835 39814835 C T TAB1 Missense_Mutation p.R217C 0.20 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 22 40415248 40415248 G A FAM83F Missense_Mutation p.R189Q 0.26 tolerated(0.09) benign(0.223) TCGA-IH-A3EA-01 22 40415935 40415935 C T FAM83F Silent p.P234P 0.43 TCGA-IH-A3EA-01 22 41077203 41077203 T A MCHR1 Missense_Mutation p.F180L 0.25 deleterious(0.02) probably_damaging(0.989) TCGA-IH-A3EA-01 22 41752719 41752719 C T ZC3H7B Missense_Mutation p.S863F 0.49 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 22 41791933 41791933 C T TEF Missense_Mutation p.S294F 0.19 deleterious(0) benign(0.165) TCGA-IH-A3EA-01 22 43716006 43716006 C T SCUBE1 Missense_Mutation p.G96R 0.31 tolerated(0.09) possibly_damaging(0.835) TCGA-IH-A3EA-01 22 46628055 46628055 G C PPARA Missense_Mutation p.D360H 0.17 deleterious(0.02) possibly_damaging(0.604) TCGA-IH-A3EA-01 22 46724658 46724658 C T GTSE1 Missense_Mutation p.P600S 0.51 tolerated(0.11) possibly_damaging(0.747) TCGA-IH-A3EA-01 22 50484395 50484395 C T TTLL8 Missense_Mutation p.G169E 0.27 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 22 50555621 50555621 G T MOV10L1 Missense_Mutation p.C432F 0.23 tolerated(0.69) benign(0.052) TCGA-IH-A3EA-01 22 50591503 50591503 C T MOV10L1 Silent p.S974S 0.19 TCGA-IH-A3EA-01 22 50693725 50693725 G A MAPK12 Missense_Mutation p.P309S 0.26 deleterious(0.05) possibly_damaging(0.868) TCGA-IH-A3EA-01 22 50845224 50845224 C T PPP6R2 Missense_Mutation p.H112Y 0.23 tolerated(0.1) benign(0.306) TCGA-IH-A3EA-01 2 100020194 100020194 C A REV1 Nonsense_Mutation p.E1044* 0.41 TCGA-IH-A3EA-01 2 10101555 10101555 G A GRHL1 Missense_Mutation p.G220D 0.41 tolerated(0.34) benign(0.065) TCGA-IH-A3EA-01 2 101598822 101598822 C T NPAS2 Nonsense_Mutation p.Q538* 0.29 TCGA-IH-A3EA-01 2 102626085 102626085 G A IL1R2 Silent p.G43G 0.31 TCGA-IH-A3EA-01 2 103120101 103120101 C T SLC9A4 Silent p.I305I 0.43 TCGA-IH-A3EA-01 2 103148906 103148906 G A SLC9A4 Missense_Mutation p.G719E 0.29 tolerated(1) benign(0.322) TCGA-IH-A3EA-01 2 103274237 103274237 G A SLC9A2 Silent p.T168T 0.35 TCGA-IH-A3EA-01 2 107052983 107052983 G A RGPD3 Silent p.H507H 0.11 TCGA-IH-A3EA-01 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.16 benign(0.002) TCGA-IH-A3EA-01 2 108476242 108476242 G A RGPD4 Missense_Mutation p.E567K 0.26 deleterious(0.02) possibly_damaging(0.636) TCGA-IH-A3EA-01 2 108488118 108488118 G A RGPD4 Missense_Mutation p.E1220K 0.19 deleterious(0.01) possibly_damaging(0.771) TCGA-IH-A3EA-01 2 108499134 108499134 A G RGPD4 Missense_Mutation p.K1691E 0.36 deleterious_low_confidence(0) benign(0.292) TCGA-IH-A3EA-01 2 108626719 108626719 G A SLC5A7 Missense_Mutation p.R382Q 0.28 deleterious(0) probably_damaging(0.986) TCGA-IH-A3EA-01 2 108627088 108627088 G A SLC5A7 Missense_Mutation p.G505E 0.29 tolerated(0.15) benign(0.321) TCGA-IH-A3EA-01 2 111417562 111417562 G A BUB1 Silent p.I423I 0.33 TCGA-IH-A3EA-01 2 111431705 111431705 T A BUB1 Missense_Mutation p.K61N 0.37 deleterious(0.03) benign(0.009) TCGA-IH-A3EA-01 2 113785485 113785485 C T IL36B Intron 0.30 TCGA-IH-A3EA-01 2 119729088 119729088 C T MARCO Silent p.I146I 0.31 TCGA-IH-A3EA-01 2 119732133 119732133 G A MARCO Missense_Mutation p.G202E 0.27 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 120219473 120219473 G A SCTR Missense_Mutation p.S247F 0.34 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 2 121712934 121712934 G A GLI2 Missense_Mutation p.G191R 0.33 deleterious(0) probably_damaging(0.988) TCGA-IH-A3EA-01 2 128363492 128363492 A G MYO7B Missense_Mutation p.N805D 0.39 tolerated(0.39) possibly_damaging(0.613) TCGA-IH-A3EA-01 2 130832996 130832996 C T POTEF Silent p.V683V 0.17 TCGA-IH-A3EA-01 2 130877615 130877615 G A POTEF Silent p.I158I 0.65 TCGA-IH-A3EA-01 2 130877858 130877858 C T POTEF Silent p.K77K 0.26 TCGA-IH-A3EA-01 2 132021485 132021485 G A POTEE Missense_Mutation p.M819I 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.681) TCGA-IH-A3EA-01 2 133539762 133539762 C T NCKAP5 Missense_Mutation p.G1541E 0.26 deleterious(0) probably_damaging(0.955) TCGA-IH-A3EA-01 2 136566965 136566965 G A LCT Silent p.F984F 0.30 TCGA-IH-A3EA-01 2 138413121 138413121 C T THSD7B Silent p.V1335V 0.30 TCGA-IH-A3EA-01 2 138421024 138421024 G A THSD7B Missense_Mutation p.M1513I 0.30 tolerated(0.1) unknown(0) TCGA-IH-A3EA-01 2 139428785 139428785 C T NXPH2 Missense_Mutation p.E168K 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-IH-A3EA-01 2 141032134 141032134 G A LRP1B Missense_Mutation p.S4334L 0.33 benign(0.307) TCGA-IH-A3EA-01 2 141116507 141116507 G A LRP1B Missense_Mutation p.L3714F 0.31 benign(0.004) TCGA-IH-A3EA-01 2 141214153 141214153 C T LRP1B Missense_Mutation p.M3278I 0.41 benign(0.019) TCGA-IH-A3EA-01 2 141299440 141299440 T C LRP1B Missense_Mutation p.N2432S 0.31 benign(0.292) TCGA-IH-A3EA-01 2 141625798 141625798 G A LRP1B Missense_Mutation p.P1402S 0.29 benign(0.001) TCGA-IH-A3EA-01 2 152507129 152507129 C T NEB Missense_Mutation p.D2396N 0.35 benign(0.054) TCGA-IH-A3EA-01 2 154801148 154801148 G A GALNT13 Silent p.L46L 0.35 TCGA-IH-A3EA-01 2 155555383 155555383 C A KCNJ3 Missense_Mutation p.D32E 0.15 tolerated(1) unknown(0) TCGA-IH-A3EA-01 2 159481558 159481558 C T PKP4 Missense_Mutation p.P258S 0.21 tolerated(0.46) benign(0.001) TCGA-IH-A3EA-01 2 159481559 159481559 C T PKP4 Missense_Mutation p.P258L 0.21 deleterious(0.01) benign(0.027) TCGA-IH-A3EA-01 2 160813066 160813066 C T PLA2R1 Missense_Mutation p.E993K 0.40 tolerated(0.54) benign(0.013) TCGA-IH-A3EA-01 2 160901421 160901421 C T PLA2R1 Silent p.R119R 0.32 TCGA-IH-A3EA-01 2 165772482 165772482 G A SLC38A11 Missense_Mutation p.P151S 0.32 tolerated(0.09) benign(0.126) TCGA-IH-A3EA-01 2 166245527 166245527 C T SCN2A Silent p.H1737H 0.44 TCGA-IH-A3EA-01 2 166901678 166901678 C T SCN1A Missense_Mutation p.E513K 0.26 tolerated(0.06) possibly_damaging(0.601) TCGA-IH-A3EA-01 2 167760287 167760287 G A XIRP2 Missense_Mutation p.D99N 0.27 possibly_damaging(0.765) TCGA-IH-A3EA-01 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.40 probably_damaging(0.999) TCGA-IH-A3EA-01 2 168101260 168101260 C T XIRP2 Missense_Mutation p.H1120Y 0.34 benign(0.132) TCGA-IH-A3EA-01 2 168103124 168103124 G A XIRP2 Missense_Mutation p.G1741E 0.35 probably_damaging(1) TCGA-IH-A3EA-01 2 170151151 170151151 C T LRP2 Nonsense_Mutation p.W166* 0.36 TCGA-IH-A3EA-01 2 171687681 171687681 T A GAD1 Missense_Mutation p.L176M 0.22 deleterious(0.03) possibly_damaging(0.706) TCGA-IH-A3EA-01 2 171687691 171687691 G C GAD1 Missense_Mutation p.G179A 0.20 tolerated(0.59) probably_damaging(1) TCGA-IH-A3EA-01 2 176987716 176987716 G A HOXD9 Missense_Mutation p.V74M 0.12 deleterious(0) probably_damaging(0.984) TCGA-IH-A3EA-01 2 17699264 17699264 C T RAD51AP2 Missense_Mutation p.R140K 0.31 tolerated(0.27) benign(0.004) TCGA-IH-A3EA-01 2 178528653 178528653 C T PDE11A Missense_Mutation p.D863N 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-IH-A3EA-01 2 179403374 179403374 C T TTN Missense_Mutation p.G33061E 0.41 TCGA-IH-A3EA-01 2 179412731 179412731 C T TTN Missense_Mutation p.E31208K 0.47 TCGA-IH-A3EA-01 2 179433331 179433331 C T TTN Missense_Mutation p.R25843K 0.33 TCGA-IH-A3EA-01 2 179434141 179434141 C T TTN Missense_Mutation p.R25573Q 0.41 TCGA-IH-A3EA-01 2 179436191 179436191 C T TTN Missense_Mutation p.G24890R 0.26 TCGA-IH-A3EA-01 2 179437307 179437307 C T TTN Missense_Mutation p.D24518N 0.42 TCGA-IH-A3EA-01 2 179442623 179442623 G A TTN Missense_Mutation p.P22844S 0.37 TCGA-IH-A3EA-01 2 179455032 179455032 G A TTN Missense_Mutation p.P20474S 0.30 TCGA-IH-A3EA-01 2 179456708 179456708 G A TTN Missense_Mutation p.L19975F 0.61 TCGA-IH-A3EA-01 2 179457292 179457292 G A TTN Missense_Mutation p.P19814S 0.27 TCGA-IH-A3EA-01 2 179466502 179466502 C T TTN Missense_Mutation p.E18439K 0.29 TCGA-IH-A3EA-01 2 179486272 179486272 G A TTN Silent p.H15093H 0.32 TCGA-IH-A3EA-01 2 179499494 179499494 T A TTN Missense_Mutation p.Y14036F 0.45 TCGA-IH-A3EA-01 2 179506986 179506986 C T TTN Silent p.K13512K 0.46 TCGA-IH-A3EA-01 2 179538395 179538395 G A TTN Missense_Mutation p.P11584L 0.27 TCGA-IH-A3EA-01 2 179569389 179569389 C T TTN Missense_Mutation p.G9937E 0.29 TCGA-IH-A3EA-01 2 179574513 179574513 G A TTN Silent p.F9511F 0.38 TCGA-IH-A3EA-01 2 179582922 179582922 C T TTN Missense_Mutation p.E8271K 0.41 TCGA-IH-A3EA-01 2 179582923 179582923 C T TTN Silent p.L8270L 0.42 TCGA-IH-A3EA-01 2 179595517 179595517 G A TTN Missense_Mutation p.L5915F 0.28 TCGA-IH-A3EA-01 2 179597727 179597727 C T TTN Silent p.K5392K 0.20 TCGA-IH-A3EA-01 2 179598191 179598191 G A TTN Missense_Mutation p.P5277S 0.40 TCGA-IH-A3EA-01 2 179602908 179602908 C T TTN Missense_Mutation p.E4758K 0.51 TCGA-IH-A3EA-01 2 179605956 179605956 G A TTN Nonsense_Mutation p.Q4002* 0.30 TCGA-IH-A3EA-01 2 179612356 179612356 C T TTN Intron 0.39 TCGA-IH-A3EA-01 2 179614350 179614350 G A TTN Intron 0.36 TCGA-IH-A3EA-01 2 179614378 179614378 G A TTN Intron 0.41 TCGA-IH-A3EA-01 2 179615363 179615363 C T TTN Intron 0.29 TCGA-IH-A3EA-01 2 179615903 179615903 G A TTN Intron 0.29 TCGA-IH-A3EA-01 2 179616249 179616249 C T TTN Intron 0.26 TCGA-IH-A3EA-01 2 179641866 179641866 C T TTN Intron 0.33 TCGA-IH-A3EA-01 2 179642656 179642656 G A TTN Missense_Mutation p.P1419S 0.40 TCGA-IH-A3EA-01 2 179650797 179650797 C T TTN Silent p.E716E 0.27 TCGA-IH-A3EA-01 2 179658154 179658154 G C TTN Missense_Mutation p.Q505E 0.03 TCGA-IH-A3EA-01 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.23 TCGA-IH-A3EA-01 2 180348136 180348136 C T ZNF385B Missense_Mutation p.G178E 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 2 185801193 185801193 G A ZNF804A Missense_Mutation p.G357E 0.20 tolerated(0.35) benign(0.01) TCGA-IH-A3EA-01 2 187627452 187627452 C T FAM171B Missense_Mutation p.P795S 0.56 tolerated(0.1) benign(0.163) TCGA-IH-A3EA-01 2 18765428 18765428 C T NT5C1B Missense_Mutation p.E333K 0.32 deleterious(0.04) probably_damaging(0.991) TCGA-IH-A3EA-01 2 190738236 190738236 G A PMS1 Missense_Mutation p.E830K 0.41 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 1926949 1926949 C T MYT1L Missense_Mutation p.D198N 0.33 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 196636426 196636426 C T DNAH7 Silent p.K3797K 0.33 TCGA-IH-A3EA-01 2 196729643 196729643 G A DNAH7 Missense_Mutation p.H2246Y 0.39 deleterious(0.01) benign(0.001) TCGA-IH-A3EA-01 2 196753549 196753549 C T DNAH7 Missense_Mutation p.D1735N 0.34 deleterious(0.02) probably_damaging(1) TCGA-IH-A3EA-01 2 196759807 196759807 C T DNAH7 Missense_Mutation p.E1597K 0.38 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.31 deleterious(0) possibly_damaging(0.846) TCGA-IH-A3EA-01 2 196866423 196866423 G A DNAH7 Silent p.F383F 0.32 TCGA-IH-A3EA-01 2 200820786 200820786 C T C2orf47 Missense_Mutation p.P89S 0.44 tolerated(0.06) benign(0.077) TCGA-IH-A3EA-01 2 20136055 20136055 G A WDR35 Missense_Mutation p.S791F 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-IH-A3EA-01 2 202589065 202589065 C T ALS2 Nonsense_Mutation p.W1155* 0.34 TCGA-IH-A3EA-01 2 203630464 203630464 C T FAM117B Missense_Mutation p.P583S 0.37 tolerated_low_confidence(0.53) unknown(0) TCGA-IH-A3EA-01 2 20402468 20402468 G A SDC1 3'UTR 0.27 TCGA-IH-A3EA-01 2 204313555 204313555 G A RAPH1 Missense_Mutation p.P473L 0.16 probably_damaging(1) TCGA-IH-A3EA-01 2 208632225 208632225 C T FZD5 Silent p.L413L 0.41 TCGA-IH-A3EA-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-IH-A3EA-01 2 209163498 209163498 C T PIKFYVE Missense_Mutation p.L349F 0.36 tolerated(0.1) probably_damaging(0.987) TCGA-IH-A3EA-01 2 212286826 212286826 C T ERBB4 Nonsense_Mutation p.W957* 0.22 TCGA-IH-A3EA-01 2 21230271 21230271 C T APOB Missense_Mutation p.G3157S 0.29 probably_damaging(1) TCGA-IH-A3EA-01 2 21233980 21233980 C T APOB Nonsense_Mutation p.W1920* 0.32 TCGA-IH-A3EA-01 2 215823125 215823125 G A ABCA12 Missense_Mutation p.S1998F 0.27 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 2 219294039 219294039 A G VIL1 Missense_Mutation p.Q200R 0.39 tolerated(1) benign(0.002) TCGA-IH-A3EA-01 2 226273727 226273727 G A NYAP2 Missense_Mutation p.R44Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 2 227915704 227915704 G A COL4A4 Missense_Mutation p.P1047S 0.31 unknown(0) TCGA-IH-A3EA-01 2 228128517 228128517 G A COL4A3 Missense_Mutation p.R391K 0.26 possibly_damaging(0.846) TCGA-IH-A3EA-01 2 228890217 228890217 G A SPHKAP Missense_Mutation p.P112S 0.36 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 2 231112650 231112650 G A SP140 Missense_Mutation p.M254I 0.37 tolerated(1) benign(0.002) TCGA-IH-A3EA-01 2 231175906 231175906 C T SP140 Missense_Mutation p.S774F 0.25 deleterious(0) probably_damaging(0.993) TCGA-IH-A3EA-01 2 234637795 234637795 C T UGT1A3 Missense_Mutation p.P8L 0.26 deleterious(0) benign(0.078) TCGA-IH-A3EA-01 2 234638230 234638230 C T UGT1A3 Missense_Mutation p.P153L 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-IH-A3EA-01 2 234652181 234652181 C T UGT1A10 Intron 0.28 TCGA-IH-A3EA-01 2 234669617 234669617 C T UGT1A8 Intron 0.28 TCGA-IH-A3EA-01 2 234749661 234749661 G A HJURP Nonsense_Mutation p.Q589* 0.30 TCGA-IH-A3EA-01 2 238245176 238245176 C T COL6A3 Splice_Site p.X2856_splice 0.39 TCGA-IH-A3EA-01 2 238275601 238275601 G A COL6A3 Silent p.V1743V 0.39 TCGA-IH-A3EA-01 2 241066336 241066336 C T MYEOV2 Missense_Mutation p.E135K 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-IH-A3EA-01 2 24991147 24991147 G A NCOA1 Missense_Mutation p.G1405R 0.36 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-IH-A3EA-01 2 25383959 25383959 C T POMC Silent p.K265K 0.29 TCGA-IH-A3EA-01 2 27803387 27803387 G A C2orf16 Silent p.R1316R 0.45 TCGA-IH-A3EA-01 2 27803388 27803388 G A C2orf16 Missense_Mutation p.E1317K 0.45 tolerated(0.08) benign(0) TCGA-IH-A3EA-01 2 28808689 28808689 G A PLB1 Missense_Mutation p.E599K 0.30 tolerated(0.27) benign(0.013) TCGA-IH-A3EA-01 2 28821586 28821586 G A PLB1 Silent p.T811T 0.26 TCGA-IH-A3EA-01 2 29052083 29052083 G A SPDYA Silent p.G150G 0.34 TCGA-IH-A3EA-01 2 29225431 29225431 G A FAM179A Missense_Mutation p.G153R 0.35 deleterious(0) probably_damaging(0.972) TCGA-IH-A3EA-01 2 29519770 29519770 G A ALK Missense_Mutation p.L601F 0.29 tolerated(0.69) possibly_damaging(0.841) TCGA-IH-A3EA-01 2 30379532 30379532 C T YPEL5 Silent p.F5F 0.31 TCGA-IH-A3EA-01 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.23 deleterious(0.03) probably_damaging(0.98) TCGA-IH-A3EA-01 2 33477897 33477897 C T LTBP1 Missense_Mutation p.P718L 0.39 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 37105146 37105146 G A STRN Missense_Mutation p.S404F 0.28 deleterious(0.01) benign(0.396) TCGA-IH-A3EA-01 2 39095333 39095333 C A DHX57 Missense_Mutation p.R72L 0.34 tolerated_low_confidence(0.42) benign(0.003) TCGA-IH-A3EA-01 2 40656689 40656689 G A SLC8A1 Silent p.I244I 0.31 TCGA-IH-A3EA-01 2 44099258 44099258 G A ABCG8 Missense_Mutation p.E370K 0.37 tolerated(0.92) benign(0.048) TCGA-IH-A3EA-01 2 44999317 44999317 G A CAMKMT 3'UTR 0.67 TCGA-IH-A3EA-01 2 47221559 47221559 C T TTC7A Missense_Mutation p.P303S 0.41 deleterious(0.05) probably_damaging(0.991) TCGA-IH-A3EA-01 2 48809359 48809359 C T STON1-GTF2A1L Silent p.S529S 0.34 TCGA-IH-A3EA-01 2 63280096 63280096 C T OTX1 5'UTR 0.31 TCGA-IH-A3EA-01 2 68384718 68384718 T C WDR92 5'Flank 0.28 TCGA-IH-A3EA-01 2 68772326 68772326 C T APLF Missense_Mutation p.P390S 0.31 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 2 70106160 70106160 C T GMCL1 3'UTR 0.47 TCGA-IH-A3EA-01 2 70188922 70188922 G A ASPRV1 5'UTR 0.43 TCGA-IH-A3EA-01 2 70890850 70890850 C T ADD2 Missense_Mutation p.E630K 0.35 tolerated(0.32) benign(0.115) TCGA-IH-A3EA-01 2 71044147 71044147 C T CLEC4F Silent p.Q122Q 0.36 TCGA-IH-A3EA-01 2 71887755 71887755 C T DYSF Silent p.P1659P 0.36 TCGA-IH-A3EA-01 2 73118507 73118507 C T SPR Silent p.A209A 0.33 TCGA-IH-A3EA-01 2 74043970 74043970 G A C2orf78 Missense_Mutation p.E874K 0.33 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 2 74466513 74466513 G A SLC4A5 Silent p.S756S 0.36 TCGA-IH-A3EA-01 2 74699807 74699807 G A MRPL53 5'UTR 0.26 TCGA-IH-A3EA-01 2 79313631 79313631 C T REG1B Splice_Site p.X62_splice 0.40 TCGA-IH-A3EA-01 2 79349983 79349983 G A REG1A Nonsense_Mutation p.W113* 0.28 TCGA-IH-A3EA-01 2 84518245 84518245 G A FUNDC2P2 RNA 0.33 TCGA-IH-A3EA-01 2 84518394 84518394 C T FUNDC2P2 RNA 0.39 TCGA-IH-A3EA-01 2 87073875 87073875 G A CD8B Missense_Mutation p.T172I 0.56 tolerated(0.67) probably_damaging(0.99) TCGA-IH-A3EA-01 2 95481655 95481655 C T ANKRD20A8P RNA 0.24 TCGA-IH-A3EA-01 2 95815934 95815934 G A ZNF514 Missense_Mutation p.S99L 0.33 tolerated(0.49) benign(0.054) TCGA-IH-A3EA-01 2 96789926 96789926 G A ASTL Missense_Mutation p.S320F 0.41 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-IH-A3EA-01 3 101520721 101520721 C T NXPE3 Missense_Mutation p.P246S 0.32 deleterious(0) probably_damaging(0.988) TCGA-IH-A3EA-01 3 102183018 102183018 G A ZPLD1 Nonsense_Mutation p.W244* 0.33 TCGA-IH-A3EA-01 3 105404212 105404212 G A CBLB Missense_Mutation p.S718F 0.33 tolerated_low_confidence(0.39) benign(0.121) TCGA-IH-A3EA-01 3 108118020 108118020 C T MYH15 Missense_Mutation p.E1631K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-IH-A3EA-01 3 108135770 108135770 G A MYH15 Silent p.F1299F 0.32 TCGA-IH-A3EA-01 3 109049539 109049539 G A DPPA4 Missense_Mutation p.P171S 0.28 tolerated(0.33) benign(0.178) TCGA-IH-A3EA-01 3 112991476 112991476 C T BOC Missense_Mutation p.T296I 0.48 deleterious(0.02) benign(0.331) TCGA-IH-A3EA-01 3 11301096 11301096 C T HRH1 Missense_Mutation p.R125C 0.44 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 3 113528320 113528320 C T ATP6V1A 3'UTR 0.50 TCGA-IH-A3EA-01 3 115394972 115394972 G A GAP43 Missense_Mutation p.R84K 0.29 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 3 115395406 115395406 G A GAP43 Missense_Mutation p.A229T 0.20 tolerated(0.05) possibly_damaging(0.731) TCGA-IH-A3EA-01 3 119445136 119445136 G A MAATS1 Silent p.R267R 0.39 TCGA-IH-A3EA-01 3 121340980 121340980 C T FBXO40 Missense_Mutation p.S235L 0.39 tolerated(0.13) benign(0.029) TCGA-IH-A3EA-01 3 121707131 121707131 C T ILDR1 3'UTR 0.23 TCGA-IH-A3EA-01 3 122001057 122001057 C T CASR Missense_Mutation p.P579L 0.32 deleterious(0.01) benign(0.314) TCGA-IH-A3EA-01 3 122289499 122289499 C T DTX3L Silent p.S711S 0.34 TCGA-IH-A3EA-01 3 123512584 123512584 G A MYLK Silent p.F35F 0.38 TCGA-IH-A3EA-01 3 126726729 126726729 C T PLXNA1 Silent p.F695F 0.20 TCGA-IH-A3EA-01 3 126726730 126726730 C T PLXNA1 Silent p.L696L 0.20 TCGA-IH-A3EA-01 3 127327810 127327810 G A MCM2 Missense_Mutation p.D458N 0.43 deleterious(0) probably_damaging(0.98) TCGA-IH-A3EA-01 3 12950904 12950904 G A IQSEC1 Missense_Mutation p.S830F 0.28 deleterious(0.02) benign(0.099) TCGA-IH-A3EA-01 3 133475801 133475801 G A TF Missense_Mutation p.R273Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 3 133878113 133878113 T A RYK Silent p.R561R 0.44 TCGA-IH-A3EA-01 3 13545678 13545678 C T HDAC11 Missense_Mutation p.S245F 0.42 deleterious(0) benign(0.278) TCGA-IH-A3EA-01 3 135741855 135741855 C T PPP2R3A Intron 0.28 TCGA-IH-A3EA-01 3 138183346 138183346 G A ESYT3 Missense_Mutation p.E359K 0.27 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 3 138340314 138340314 G A FAIM Missense_Mutation p.G49E 0.47 deleterious(0.01) probably_damaging(0.99) TCGA-IH-A3EA-01 3 140282006 140282006 C T CLSTN2 Missense_Mutation p.H815Y 0.35 deleterious(0.01) possibly_damaging(0.515) TCGA-IH-A3EA-01 3 140997255 140997255 C T ACPL2 Missense_Mutation p.P51S 0.31 tolerated_low_confidence(0.54) benign(0.097) TCGA-IH-A3EA-01 3 14174406 14174406 C T TMEM43 Silent p.F161F 0.35 TCGA-IH-A3EA-01 3 147114198 147114198 G A ZIC4 Silent p.F93F 0.31 TCGA-IH-A3EA-01 3 147128162 147128162 C T ZIC1 Missense_Mutation p.S88F 0.38 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 3 149216612 149216612 A G TM4SF4 Missense_Mutation p.I169V 0.32 tolerated(0.31) benign(0.005) TCGA-IH-A3EA-01 3 151085968 151085968 C T MED12L Missense_Mutation p.A1125V 0.41 deleterious(0) probably_damaging(0.984) TCGA-IH-A3EA-01 3 151451916 151451916 G A AADACL2 Nonsense_Mutation p.W31* 0.36 TCGA-IH-A3EA-01 3 155215199 155215199 G A PLCH1 Missense_Mutation p.R590C 0.38 deleterious(0) possibly_damaging(0.893) TCGA-IH-A3EA-01 3 155655416 155655416 C T GMPS Missense_Mutation p.P673S 0.23 tolerated(0.1) benign(0.415) TCGA-IH-A3EA-01 3 155838626 155838626 G A KCNAB1 Missense_Mutation p.D76N 0.45 tolerated_low_confidence(0.86) benign(0) TCGA-IH-A3EA-01 3 158970531 158970531 G A IQCJ-SCHIP1 Missense_Mutation p.M30I 0.35 deleterious_low_confidence(0.01) benign(0.043) TCGA-IH-A3EA-01 3 160232929 160232929 A G KPNA4 Intron 0.45 TCGA-IH-A3EA-01 3 164906435 164906435 G A SLITRK3 Silent p.S728S 0.37 TCGA-IH-A3EA-01 3 167183300 167183300 G A SERPINI2 Missense_Mutation p.P214S 0.24 deleterious(0.05) probably_damaging(0.914) TCGA-IH-A3EA-01 3 169099283 169099283 C T MECOM Missense_Mutation p.E47K 0.33 tolerated(0.13) possibly_damaging(0.64) TCGA-IH-A3EA-01 3 169539844 169539844 C T LRRIQ4 Silent p.F45F 0.36 TCGA-IH-A3EA-01 3 17051542 17051542 C T PLCL2 Missense_Mutation p.S109F 0.36 deleterious(0) probably_damaging(0.954) TCGA-IH-A3EA-01 3 17051990 17051990 T C PLCL2 Silent p.I258I 0.36 TCGA-IH-A3EA-01 3 172241143 172241143 C T TNFSF10 Missense_Mutation p.S11N 0.30 deleterious(0.04) possibly_damaging(0.848) TCGA-IH-A3EA-01 3 172766766 172766766 G A SPATA16 Missense_Mutation p.P244L 0.27 deleterious(0.02) possibly_damaging(0.851) TCGA-IH-A3EA-01 3 172835116 172835116 G A SPATA16 Missense_Mutation p.R136C 0.26 deleterious(0.01) benign(0.063) TCGA-IH-A3EA-01 3 178543421 178543421 G A KCNMB2 Silent p.R34R 0.25 TCGA-IH-A3EA-01 3 183777793 183777793 G A HTR3C Missense_Mutation p.G368E 0.29 tolerated(0.63) benign(0.015) TCGA-IH-A3EA-01 3 185232278 185232278 C T LIPH Nonsense_Mutation p.W338* 0.26 TCGA-IH-A3EA-01 3 186256671 186256671 G A CRYGS Silent p.S117S 0.43 TCGA-IH-A3EA-01 3 186338525 186338525 C T AHSG Missense_Mutation p.P304S 0.33 tolerated(0.07) benign(0.166) TCGA-IH-A3EA-01 3 187416329 187416329 A G RTP2 Missense_Mutation p.V212A 0.39 deleterious(0) benign(0.002) TCGA-IH-A3EA-01 3 189526224 189526224 C T TP63 Missense_Mutation p.P163L 0.37 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 3 191179085 191179085 C A PYDC2 Missense_Mutation p.T45K 0.31 tolerated(0.59) benign(0.006) TCGA-IH-A3EA-01 3 193061778 193061778 G A ATP13A5 Missense_Mutation p.S294L 0.24 tolerated(0.79) possibly_damaging(0.794) TCGA-IH-A3EA-01 3 193166098 193166098 C T ATP13A4 Silent p.L683L 0.37 TCGA-IH-A3EA-01 3 193376716 193376716 C T OPA1 Missense_Mutation p.S773F 0.33 deleterious(0.04) benign(0.396) TCGA-IH-A3EA-01 3 194062446 194062446 G A CPN2 Missense_Mutation p.P329L 0.35 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 3 21462756 21462756 G A ZNF385D Missense_Mutation p.P380S 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-IH-A3EA-01 3 21467023 21467023 G A ZNF385D Silent p.I271I 0.37 TCGA-IH-A3EA-01 3 21467054 21467054 C T ZNF385D Missense_Mutation p.G261D 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-IH-A3EA-01 3 24185073 24185073 C T THRB Nonsense_Mutation p.W219* 0.36 TCGA-IH-A3EA-01 3 24231681 24231681 G A THRB Missense_Mutation p.P56L 0.33 deleterious_low_confidence(0.02) benign(0.001) TCGA-IH-A3EA-01 3 3143430 3143430 C T IL5RA Missense_Mutation p.D105N 0.40 tolerated(0.97) benign(0.001) TCGA-IH-A3EA-01 3 35729315 35729315 G A ARPP21 Missense_Mutation p.E116K 0.31 tolerated(0.37) possibly_damaging(0.475) TCGA-IH-A3EA-01 3 36570342 36570342 G A STAC Silent p.G325G 0.15 TCGA-IH-A3EA-01 3 36873549 36873549 C T TRANK1 Missense_Mutation p.E2465K 0.41 deleterious(0.01) possibly_damaging(0.493) TCGA-IH-A3EA-01 3 38141900 38141900 G A DLEC1 Missense_Mutation p.E950K 0.30 tolerated(0.09) benign(0.382) TCGA-IH-A3EA-01 3 38537972 38537972 C T EXOG Silent p.F38F 0.31 TCGA-IH-A3EA-01 3 38627422 38627422 G A SCN5A Silent p.I849I 0.35 TCGA-IH-A3EA-01 3 38797299 38797299 G A SCN10A Missense_Mutation p.P481S 0.30 tolerated(0.7) benign(0.001) TCGA-IH-A3EA-01 3 38798304 38798304 C T SCN10A Missense_Mutation p.G384E 0.35 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 3 38835429 38835429 C T SCN10A Missense_Mutation p.E25K 0.32 tolerated(0.06) benign(0.2) TCGA-IH-A3EA-01 3 3887441 3887441 C T LRRN1 Silent p.P372P 0.29 TCGA-IH-A3EA-01 3 39230171 39230171 C T XIRP1 Missense_Mutation p.A256T 0.40 tolerated(0.07) possibly_damaging(0.505) TCGA-IH-A3EA-01 3 39374899 39374899 G A CCR8 3'UTR 0.50 TCGA-IH-A3EA-01 3 40251489 40251489 G A MYRIP Missense_Mutation p.D604N 0.33 deleterious(0.01) possibly_damaging(0.87) TCGA-IH-A3EA-01 3 40468954 40468954 G A ENTPD3 Silent p.K515K 0.16 TCGA-IH-A3EA-01 3 40529414 40529414 C T ZNF619 Silent p.F511F 0.44 TCGA-IH-A3EA-01 3 44951641 44951641 G A TGM4 Missense_Mutation p.E463K 0.28 tolerated(0.87) benign(0.013) TCGA-IH-A3EA-01 3 45151953 45151953 G A CDCP1 Intron 0.45 TCGA-IH-A3EA-01 3 45152195 45152195 G A CDCP1 Missense_Mutation p.S265F 0.32 tolerated(0.71) benign(0.046) TCGA-IH-A3EA-01 3 46245276 46245276 C T CCR1 Missense_Mutation p.E177K 0.25 deleterious(0.03) benign(0.065) TCGA-IH-A3EA-01 3 4685851 4685851 C T ITPR1 Missense_Mutation p.P186L 0.25 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 3 47912453 47912453 G A MAP4 Silent p.F903F 0.33 TCGA-IH-A3EA-01 3 48613161 48613161 G A COL7A1 Silent p.I1959I 0.27 TCGA-IH-A3EA-01 3 48719109 48719109 G A NCKIPSD Missense_Mutation p.P235S 0.62 tolerated(0.6) benign(0.002) TCGA-IH-A3EA-01 3 49694454 49694454 C T BSN Missense_Mutation p.P2489S 0.33 unknown(0) TCGA-IH-A3EA-01 3 49896855 49896855 C T CAMKV Missense_Mutation p.D468N 0.39 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-IH-A3EA-01 3 49950762 49950762 C T MON1A Silent p.Q103Q 0.49 TCGA-IH-A3EA-01 3 50148193 50148193 C T RBM5 Missense_Mutation p.P482L 0.40 deleterious(0) probably_damaging(0.987) TCGA-IH-A3EA-01 3 50229182 50229188 GGAGAAG - GNAT1 Frame_Shift_Del p.E8Dfs*10 0.24 TCGA-IH-A3EA-01 3 52721287 52721287 G T GNL3 Missense_Mutation p.R33I 0.44 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 3 52860887 52860887 C A ITIH4 Nonsense_Mutation p.E147* 0.45 TCGA-IH-A3EA-01 3 52988355 52988355 A G SFMBT1 Missense_Mutation p.V34A 0.27 tolerated(1) benign(0.003) TCGA-IH-A3EA-01 3 53694281 53694281 C T CACNA1D Nonsense_Mutation p.R249* 0.25 TCGA-IH-A3EA-01 3 53779725 53779725 C T CACNA1D Silent p.F1047F 0.38 TCGA-IH-A3EA-01 3 53834367 53834367 G A CACNA1D Missense_Mutation p.R1692Q 0.28 tolerated(0.63) benign(0.001) TCGA-IH-A3EA-01 3 58519830 58519830 G A ACOX2 Silent p.F122F 0.27 TCGA-IH-A3EA-01 3 63965651 63965651 C T ATXN7 Missense_Mutation p.S187F 0.35 deleterious(0) probably_damaging(0.952) TCGA-IH-A3EA-01 3 68466480 68466480 C T FAM19A1 Missense_Mutation p.R57C 0.35 deleterious(0) possibly_damaging(0.88) TCGA-IH-A3EA-01 3 71015054 71015054 G A FOXP1 Missense_Mutation p.P628S 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-IH-A3EA-01 3 7188287 7188287 C T GRM7 Missense_Mutation p.T223I 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-IH-A3EA-01 3 7620310 7620310 C T GRM7 Nonsense_Mutation p.R573* 0.31 TCGA-IH-A3EA-01 3 86115993 86115993 C T CADM2 3'Flank 0.43 TCGA-IH-A3EA-01 3 8675373 8675373 C T SSUH2 Silent p.L106L 0.37 TCGA-IH-A3EA-01 3 89390960 89390960 C T EPHA3 Silent p.I342I 0.37 TCGA-IH-A3EA-01 3 9066956 9066956 G A SRGAP3 Missense_Mutation p.S556F 0.36 deleterious(0) possibly_damaging(0.841) TCGA-IH-A3EA-01 3 97251387 97251387 A T EPHA6 Nonsense_Mutation p.R796* 0.35 TCGA-IH-A3EA-01 3 9739402 9739402 G C MTMR14 Missense_Mutation p.D541H 0.35 tolerated(0.09) probably_damaging(0.99) TCGA-IH-A3EA-01 3 97868415 97868415 C T OR5H14 Silent p.L62L 0.41 TCGA-IH-A3EA-01 3 98002450 98002450 G A OR5H2 Missense_Mutation p.R240K 0.39 tolerated(0.64) benign(0.02) TCGA-IH-A3EA-01 3 98109615 98109615 C T OR5K3 Silent p.L36L 0.33 TCGA-IH-A3EA-01 4 100208773 100208773 G A ADH1A Missense_Mutation p.S23F 0.36 deleterious(0.02) benign(0.016) TCGA-IH-A3EA-01 4 100235009 100235009 G A ADH1B Missense_Mutation p.S266L 0.31 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 4 100463110 100463110 G A C4orf17 Missense_Mutation p.M308I 0.10 tolerated(0.09) benign(0.104) TCGA-IH-A3EA-01 4 100475086 100475086 G A TRMT10A Silent p.I167I 0.29 TCGA-IH-A3EA-01 4 100504728 100504728 C T MTTP Intron 0.33 TCGA-IH-A3EA-01 4 101108828 101108828 C T DDIT4L 3'UTR 0.37 TCGA-IH-A3EA-01 4 10446988 10446988 G A ZNF518B Missense_Mutation p.P322L 0.32 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 4 106861258 106861258 G A NPNT Missense_Mutation p.A208T 0.38 deleterious(0.01) possibly_damaging(0.555) TCGA-IH-A3EA-01 4 106967810 106967810 A G TBCK Missense_Mutation p.Y867H 0.40 deleterious(0) probably_damaging(0.928) TCGA-IH-A3EA-01 4 107847068 107847068 C T DKK2 Silent p.G87G 0.29 TCGA-IH-A3EA-01 4 110606415 110606415 T C CCDC109B Silent p.T275T 0.38 TCGA-IH-A3EA-01 4 115754817 115754817 C T NDST4 Missense_Mutation p.E781K 0.38 tolerated(0.77) possibly_damaging(0.748) TCGA-IH-A3EA-01 4 119273766 119273766 G A PRSS12 Missense_Mutation p.P37L 0.29 tolerated_low_confidence(0.24) benign(0) TCGA-IH-A3EA-01 4 120107240 120107240 C T MYOZ2 Missense_Mutation p.S227F 0.32 tolerated(0.2) possibly_damaging(0.652) TCGA-IH-A3EA-01 4 121958359 121958359 C T NDNF Missense_Mutation p.G256E 0.32 tolerated(0.22) probably_damaging(0.989) TCGA-IH-A3EA-01 4 126329707 126329707 C T FAT4 Missense_Mutation p.P1893L 0.27 benign(0.118) TCGA-IH-A3EA-01 4 126336611 126336611 G A FAT4 Missense_Mutation p.E2165K 0.37 probably_damaging(0.997) TCGA-IH-A3EA-01 4 126411926 126411926 C T FAT4 Missense_Mutation p.S4650L 0.39 probably_damaging(0.985) TCGA-IH-A3EA-01 4 128732767 128732767 T C HSPA4L Silent p.F518F 0.38 TCGA-IH-A3EA-01 4 138449932 138449932 G A PCDH18 Nonsense_Mutation p.Q844* 0.42 TCGA-IH-A3EA-01 4 138453306 138453306 C T PCDH18 5'UTR 0.23 TCGA-IH-A3EA-01 4 140432990 140432990 G A SETD7 Missense_Mutation p.H310Y 0.27 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 4 142053639 142053639 G A RNF150 Silent p.F108F 0.47 TCGA-IH-A3EA-01 4 144826653 144826653 C T GYPE Missense_Mutation p.G3E 0.29 tolerated_low_confidence(0.11) probably_damaging(0.969) TCGA-IH-A3EA-01 4 149357343 149357343 G A NR3C2 Missense_Mutation p.P224S 0.50 tolerated_low_confidence(0.87) benign(0.001) TCGA-IH-A3EA-01 4 155163822 155163822 G A DCHS2 Silent p.L1893L 0.29 TCGA-IH-A3EA-01 4 155237102 155237102 C T DCHS2 Missense_Mutation p.M1231I 0.25 tolerated(1) benign(0.002) TCGA-IH-A3EA-01 4 156643314 156643314 G A GUCY1A3 Missense_Mutation p.R614Q 0.40 tolerated(0.08) possibly_damaging(0.817) TCGA-IH-A3EA-01 4 158233857 158233857 G A GRIA2 Missense_Mutation p.D166N 0.35 deleterious(0.01) benign(0.035) TCGA-IH-A3EA-01 4 159533480 159533480 C T RXFP1 Missense_Mutation p.P216S 0.36 tolerated(0.8) benign(0) TCGA-IH-A3EA-01 4 16510269 16510269 C T LDB2 Silent p.R260R 0.31 TCGA-IH-A3EA-01 4 166963269 166963269 G A TLL1 Missense_Mutation p.G451E 0.33 deleterious(0.04) possibly_damaging(0.626) TCGA-IH-A3EA-01 4 167021941 167021941 C T TLL1 Silent p.F985F 0.48 TCGA-IH-A3EA-01 4 167810336 167810336 T C SPOCK3 Silent p.G181G 0.32 TCGA-IH-A3EA-01 4 177143536 177143536 G A ASB5 Silent p.V104V 0.41 TCGA-IH-A3EA-01 4 183713475 183713475 G A TENM3 Missense_Mutation p.D1884N 0.35 deleterious(0.02) possibly_damaging(0.821) TCGA-IH-A3EA-01 4 183714696 183714696 G A TENM3 Missense_Mutation p.E2291K 0.16 deleterious(0.01) possibly_damaging(0.636) TCGA-IH-A3EA-01 4 184562559 184562559 A T RWDD4 3'UTR 0.30 TCGA-IH-A3EA-01 4 20521064 20521064 C T SLIT2 Missense_Mutation p.S373F 0.21 deleterious(0) possibly_damaging(0.756) TCGA-IH-A3EA-01 4 26483645 26483645 G A CCKAR Missense_Mutation p.S301F 0.30 deleterious(0.01) probably_damaging(0.926) TCGA-IH-A3EA-01 4 3447795 3447795 C T HGFAC Missense_Mutation p.P377S 0.44 tolerated(0.05) benign(0.007) TCGA-IH-A3EA-01 4 38690577 38690577 C T KLF3 Silent p.P143P 0.41 TCGA-IH-A3EA-01 4 40244964 40244964 C T RHOH 5'UTR 0.16 TCGA-IH-A3EA-01 4 40434738 40434738 G A RBM47 Missense_Mutation p.A491V 0.45 tolerated_low_confidence(0.15) probably_damaging(0.956) TCGA-IH-A3EA-01 4 40946898 40946898 G A APBB2 Missense_Mutation p.P343L 0.37 deleterious(0.04) possibly_damaging(0.643) TCGA-IH-A3EA-01 4 41694357 41694357 G A LIMCH1 Missense_Mutation p.R1061Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 4 46066470 46066470 C T GABRG1 Missense_Mutation p.E205K 0.34 tolerated(1) probably_damaging(0.949) TCGA-IH-A3EA-01 4 47559879 47559879 G A ATP10D Missense_Mutation p.E675K 0.33 tolerated(0.61) benign(0.018) TCGA-IH-A3EA-01 4 48027120 48027120 C T NIPAL1 Nonsense_Mutation p.Q28* 0.36 TCGA-IH-A3EA-01 4 48906587 48906587 C T OCIAD2 5'UTR 0.19 TCGA-IH-A3EA-01 4 49032865 49032865 G A CWH43 Missense_Mutation p.E466K 0.38 deleterious(0) probably_damaging(0.953) TCGA-IH-A3EA-01 4 49063906 49063906 G A CWH43 Silent p.%3D 0.37 TCGA-IH-A3EA-01 4 5332977 5332977 C T STK32B Silent p.F97F 0.45 TCGA-IH-A3EA-01 4 54218927 54218927 A C SCFD2 Missense_Mutation p.V282G 0.52 deleterious(0) possibly_damaging(0.493) TCGA-IH-A3EA-01 4 55948164 55948164 C T KDR Silent p.L1269L 0.39 TCGA-IH-A3EA-01 4 57182451 57182451 C T KIAA1211 Missense_Mutation p.S928F 0.34 tolerated(0.25) benign(0.227) TCGA-IH-A3EA-01 4 57384864 57384864 C T ARL9 Missense_Mutation p.R13W 0.32 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 4 62599136 62599136 G A LPHN3 Silent p.V353V 0.43 TCGA-IH-A3EA-01 4 68500193 68500193 G A UBA6 Missense_Mutation p.S629F 0.35 deleterious(0) probably_damaging(0.968) TCGA-IH-A3EA-01 4 68788632 68788632 C T TMPRSS11A Missense_Mutation p.R181Q 0.38 tolerated(0.08) probably_damaging(1) TCGA-IH-A3EA-01 4 69343323 69343323 G A TMPRSS11E Missense_Mutation p.G315E 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 4 69512731 69512731 G A UGT2B15 3'UTR 0.25 TCGA-IH-A3EA-01 4 69798460 69798460 G A UGT2A3 Silent p.V294V 0.40 TCGA-IH-A3EA-01 4 69978308 69978308 G A UGT2B7 Missense_Mutation p.D482N 0.35 tolerated(0.54) benign(0.02) TCGA-IH-A3EA-01 4 70346525 70346525 C T UGT2B4 Missense_Mutation p.G472R 0.34 deleterious(0.01) possibly_damaging(0.905) TCGA-IH-A3EA-01 4 70810601 70810601 C T CSN1S1 Missense_Mutation p.P146S 0.30 deleterious(0.04) probably_damaging(0.932) TCGA-IH-A3EA-01 4 71497599 71497599 A G ENAM Missense_Mutation p.K53E 0.36 deleterious(0) benign(0.024) TCGA-IH-A3EA-01 4 71508128 71508128 C T ENAM Missense_Mutation p.P329S 0.28 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 4 71510382 71510382 G A ENAM Missense_Mutation p.S1080N 0.35 tolerated(0.06) benign(0.02) TCGA-IH-A3EA-01 4 71510503 71510503 A G ENAM Silent p.P1120P 0.35 TCGA-IH-A3EA-01 4 72623842 72623842 C T GC Missense_Mutation p.D269N 0.39 tolerated(0.08) benign(0.035) TCGA-IH-A3EA-01 4 74276032 74276032 G A ALB Missense_Mutation p.D207N 0.31 tolerated(0.42) benign(0.005) TCGA-IH-A3EA-01 4 74450947 74450947 C T RASSF6 Missense_Mutation p.E205K 0.31 tolerated(0.26) benign(0.002) TCGA-IH-A3EA-01 4 74450975 74450975 C T RASSF6 Silent p.R195R 0.39 TCGA-IH-A3EA-01 4 75065573 75065573 C T MTHFD2L Missense_Mutation p.H172Y 0.32 deleterious(0) probably_damaging(0.934) TCGA-IH-A3EA-01 4 75246812 75246812 G A EREG Missense_Mutation p.G79E 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 4 75971482 75971482 G A PARM1 3'UTR 0.48 TCGA-IH-A3EA-01 4 78641497 78641497 G A CNOT6L 3'UTR 0.20 TCGA-IH-A3EA-01 4 78697453 78697453 T - CNOT6L Frame_Shift_Del p.K33Nfs*7 0.29 TCGA-IH-A3EA-01 4 8621267 8621267 G A CPZ Missense_Mutation p.D628N 0.42 tolerated_low_confidence(0.5) benign(0) TCGA-IH-A3EA-01 4 87671632 87671632 C T PTPN13 Missense_Mutation p.S887L 0.30 tolerated(0.13) probably_damaging(0.981) TCGA-IH-A3EA-01 4 87967415 87967415 C T AFF1 Missense_Mutation p.P46S 0.29 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 4 87968541 87968541 C T AFF1 Missense_Mutation p.S285F 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-IH-A3EA-01 4 87968542 87968542 C T AFF1 Silent p.S285S 0.37 TCGA-IH-A3EA-01 4 88766509 88766509 C T MEPE Silent p.L163L 0.42 TCGA-IH-A3EA-01 4 94411922 94411922 C T GRID2 Missense_Mutation p.S664F 0.45 deleterious(0) possibly_damaging(0.89) TCGA-IH-A3EA-01 4 9784717 9784717 A G DRD5 Missense_Mutation p.N355S 0.36 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 101834571 101834571 G T SLCO6A1 5'UTR 0.38 TCGA-IH-A3EA-01 5 110819866 110819866 G A CAMK4 Missense_Mutation p.G375E 0.35 tolerated(0.38) benign(0.004) TCGA-IH-A3EA-01 5 11384921 11384921 G A CTNND2 Missense_Mutation p.P345S 0.33 deleterious(0.03) benign(0.034) TCGA-IH-A3EA-01 5 115338599 115338599 C T AQPEP Nonsense_Mutation p.Q630* 0.33 TCGA-IH-A3EA-01 5 118965380 118965380 C T FAM170A 5'UTR 0.22 TCGA-IH-A3EA-01 5 118965409 118965409 G A FAM170A 5'UTR 0.33 TCGA-IH-A3EA-01 5 118968536 118968536 C T FAM170A Missense_Mutation p.S55F 0.70 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 5 121761118 121761118 G A SNCAIP Silent p.A358A 0.40 TCGA-IH-A3EA-01 5 121785620 121785620 C T SNCAIP Missense_Mutation p.P558L 0.33 tolerated(0.21) benign(0.002) TCGA-IH-A3EA-01 5 126993190 126993190 C T CTXN3 5'UTR 0.44 TCGA-IH-A3EA-01 5 1280382 1280382 G A TERT Missense_Mutation p.P614L 0.40 tolerated(0.63) benign(0.006) TCGA-IH-A3EA-01 5 129037210 129037210 G A ADAMTS19 Silent p.G1022G 0.30 TCGA-IH-A3EA-01 5 129244015 129244015 C T CHSY3 Missense_Mutation p.R350C 0.39 deleterious(0) probably_damaging(0.995) TCGA-IH-A3EA-01 5 133657530 133657530 G A CDKL3 Missense_Mutation p.P202S 0.49 deleterious(0) probably_damaging(0.978) TCGA-IH-A3EA-01 5 135396605 135396605 C T TGFBI Missense_Mutation p.T629I 0.33 deleterious(0.02) benign(0.317) TCGA-IH-A3EA-01 5 135398975 135398975 C T TGFBI 3'UTR 0.32 TCGA-IH-A3EA-01 5 13719087 13719087 G A DNAH5 Missense_Mutation p.H4135Y 0.35 benign(0.415) TCGA-IH-A3EA-01 5 137219247 137219247 G A MYOT Missense_Mutation p.E331K 0.22 tolerated(0.09) possibly_damaging(0.679) TCGA-IH-A3EA-01 5 137600165 137600165 G A GFRA3 Missense_Mutation p.P55L 0.38 tolerated(0.09) probably_damaging(0.92) TCGA-IH-A3EA-01 5 13776681 13776681 C T DNAH5 Silent p.Q3080Q 0.41 TCGA-IH-A3EA-01 5 13811842 13811842 G A DNAH5 Nonsense_Mutation p.Q2441* 0.37 TCGA-IH-A3EA-01 5 13814899 13814899 G A DNAH5 Silent p.L2349L 0.21 TCGA-IH-A3EA-01 5 13850786 13850786 C T DNAH5 Missense_Mutation p.E1697K 0.30 possibly_damaging(0.621) TCGA-IH-A3EA-01 5 13850880 13850880 G A DNAH5 Silent p.I1665I 0.24 TCGA-IH-A3EA-01 5 13850924 13850924 C T DNAH5 Missense_Mutation p.E1651K 0.28 possibly_damaging(0.621) TCGA-IH-A3EA-01 5 13886070 13886070 T A DNAH5 Intron 0.48 TCGA-IH-A3EA-01 5 13894920 13894920 G A DNAH5 Missense_Mutation p.A757V 0.38 possibly_damaging(0.787) TCGA-IH-A3EA-01 5 13922323 13922323 C T DNAH5 Missense_Mutation p.E185K 0.29 benign(0.305) TCGA-IH-A3EA-01 5 140165878 140165878 G A PCDHA1 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.006) TCGA-IH-A3EA-01 5 140165879 140165879 G A PCDHA1 Missense_Mutation p.V2M 0.29 tolerated_low_confidence(0.12) benign(0.013) TCGA-IH-A3EA-01 5 140176063 140176063 C T PCDHA2 Missense_Mutation p.S505L 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-IH-A3EA-01 5 140182171 140182171 C T PCDHA3 Silent p.F463F 0.42 TCGA-IH-A3EA-01 5 140208418 140208418 G A PCDHA6 Missense_Mutation p.E248K 0.42 tolerated_low_confidence(1) benign(0.013) TCGA-IH-A3EA-01 5 140433306 140433306 C T PCDHB1 Missense_Mutation p.R751W 0.37 deleterious(0) benign(0) TCGA-IH-A3EA-01 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.13 tolerated_low_confidence(0.62) benign(0) TCGA-IH-A3EA-01 5 140557970 140557970 C T PCDHB8 Nonsense_Mutation p.Q119* 0.09 TCGA-IH-A3EA-01 5 140558218 140558218 G A PCDHB8 Silent p.L201L 0.10 TCGA-IH-A3EA-01 5 140589695 140589695 G A PCDHB12 Missense_Mutation p.E406K 0.24 tolerated_low_confidence(0.09) benign(0.158) TCGA-IH-A3EA-01 5 140729876 140729876 C T PCDHGB1 Missense_Mutation p.P17S 0.20 tolerated(0.5) benign(0.021) TCGA-IH-A3EA-01 5 140755762 140755762 C T PCDHGA6 Silent p.F704F 0.22 TCGA-IH-A3EA-01 5 140857474 140857474 C A PCDHGC3 Missense_Mutation p.D597E 0.33 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 143853624 143853624 C T KCTD16 Missense_Mutation p.P412S 0.23 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 5 145439567 145439567 C T SH3RF2 Missense_Mutation p.A565V 0.34 tolerated(0.21) benign(0.002) TCGA-IH-A3EA-01 5 14602402 14602402 C T FAM105A Silent p.I153I 0.28 TCGA-IH-A3EA-01 5 14602410 14602410 C T FAM105A Missense_Mutation p.P156L 0.37 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 5 146080637 146080637 G A PPP2R2B Missense_Mutation p.R50W 0.38 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 5 146991928 146991928 G A JAKMIP2 Missense_Mutation p.R785C 0.56 deleterious(0) probably_damaging(0.992) TCGA-IH-A3EA-01 5 148016583 148016583 G A HTR4 5'UTR 0.30 TCGA-IH-A3EA-01 5 148407305 148407305 C T SH3TC2 Missense_Mutation p.G664R 0.41 tolerated(0.16) benign(0.008) TCGA-IH-A3EA-01 5 148620262 148620262 C T ABLIM3 Missense_Mutation p.P410S 0.33 deleterious(0.03) possibly_damaging(0.562) TCGA-IH-A3EA-01 5 149206376 149206376 C T PPARGC1B Silent p.P131P 0.36 TCGA-IH-A3EA-01 5 150696397 150696397 G A SLC36A2 Missense_Mutation p.S478F 0.32 deleterious(0.03) benign(0.043) TCGA-IH-A3EA-01 5 150925668 150925668 G A FAT2 Missense_Mutation p.P1674S 0.31 possibly_damaging(0.685) TCGA-IH-A3EA-01 5 151784366 151784366 G A NMUR2 Silent p.V103V 0.35 TCGA-IH-A3EA-01 5 153054170 153054170 G A GRIA1 Nonsense_Mutation p.W280* 0.36 TCGA-IH-A3EA-01 5 156590534 156590534 C T FAM71B Missense_Mutation p.A248T 0.39 tolerated(0.36) benign(0.001) TCGA-IH-A3EA-01 5 156747771 156747771 C T CYFIP2 Silent p.I518I 0.40 TCGA-IH-A3EA-01 5 159680725 159680725 G A CCNJL Missense_Mutation p.P323L 0.35 deleterious(0.01) benign(0.197) TCGA-IH-A3EA-01 5 160039797 160039797 C T ATP10B Missense_Mutation p.R930K 0.34 tolerated(1) benign(0.009) TCGA-IH-A3EA-01 5 160061526 160061526 C T ATP10B Missense_Mutation p.D406N 0.35 tolerated(0.39) probably_damaging(1) TCGA-IH-A3EA-01 5 160721238 160721238 C T GABRB2 Silent p.K463K 0.39 TCGA-IH-A3EA-01 5 161116141 161116141 A T GABRA6 Missense_Mutation p.I138L 0.36 tolerated(0.29) benign(0.012) TCGA-IH-A3EA-01 5 161495082 161495082 G A GABRG2 Nonsense_Mutation p.W26* 0.15 TCGA-IH-A3EA-01 5 167645358 167645358 C T TENM2 Missense_Mutation p.L1488F 0.27 deleterious(0) possibly_damaging(0.866) TCGA-IH-A3EA-01 5 169081470 169081470 G A DOCK2 Missense_Mutation p.R36Q 0.34 tolerated(0.29) benign(0.005) TCGA-IH-A3EA-01 5 171766268 171766268 G A SH3PXD2B Missense_Mutation p.P614L 0.30 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 172744763 172744763 C T STC2 3'UTR 0.29 TCGA-IH-A3EA-01 5 174870065 174870065 C T DRD1 Missense_Mutation p.G13E 0.31 tolerated_low_confidence(0.27) benign(0.014) TCGA-IH-A3EA-01 5 176025340 176025340 G A GPRIN1 Missense_Mutation p.S499F 0.34 tolerated(0.2) benign(0.004) TCGA-IH-A3EA-01 5 176314569 176314569 C T HK3 Missense_Mutation p.D495N 0.42 deleterious(0.01) benign(0.017) TCGA-IH-A3EA-01 5 176491636 176491636 C T ZNF346 3'UTR 0.39 TCGA-IH-A3EA-01 5 176517793 176517793 G A FGFR4 Missense_Mutation p.D135N 0.25 tolerated(0.11) benign(0.003) TCGA-IH-A3EA-01 5 176885177 176885177 G A DBN1 Missense_Mutation p.S555F 0.38 tolerated(0.1) benign(0.272) TCGA-IH-A3EA-01 5 178410006 178410006 C T GRM6 Missense_Mutation p.E781K 0.36 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 179696318 179696318 G A MAPK9 Missense_Mutation p.R72C 0.41 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 180048130 180048130 C T FLT4 Missense_Mutation p.E715K 0.35 deleterious(0.03) possibly_damaging(0.835) TCGA-IH-A3EA-01 5 180376952 180376952 C T BTNL8 Missense_Mutation p.S304F 0.19 deleterious(0) benign(0.342) TCGA-IH-A3EA-01 5 182129 182129 G A PLEKHG4B Missense_Mutation p.M1169I 0.21 deleterious(0) benign(0.02) TCGA-IH-A3EA-01 5 21752148 21752148 G A CDH12 Missense_Mutation p.P695S 0.39 tolerated(0.08) probably_damaging(0.988) TCGA-IH-A3EA-01 5 26881493 26881493 C T CDH9 Missense_Mutation p.E708K 0.39 tolerated(0.21) possibly_damaging(0.622) TCGA-IH-A3EA-01 5 31299667 31299667 G A CDH6 Missense_Mutation p.G247E 0.32 deleterious(0) possibly_damaging(0.842) TCGA-IH-A3EA-01 5 32091181 32091181 G A PDZD2 Missense_Mutation p.G2543R 0.38 deleterious(0.04) benign(0.097) TCGA-IH-A3EA-01 5 32091182 32091182 G A PDZD2 Missense_Mutation p.G2543E 0.38 tolerated(0.15) benign(0.097) TCGA-IH-A3EA-01 5 34028938 34028938 C T C1QTNF3 Silent p.G207G 0.28 TCGA-IH-A3EA-01 5 35086443 35086443 C G PRLR Splice_Site p.X24_splice 0.24 TCGA-IH-A3EA-01 5 35873648 35873648 G A IL7R Missense_Mutation p.E202K 0.41 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 5 37164402 37164402 G A C5orf42 Missense_Mutation p.P2521S 0.37 tolerated(0.25) benign(0.006) TCGA-IH-A3EA-01 5 37170213 37170222 GGCTCTCTGG - C5orf42 Frame_Shift_Del p.A2128Vfs*36 0.28 TCGA-IH-A3EA-01 5 38869168 38869168 C T OSMR Nonsense_Mutation p.Q8* 0.47 TCGA-IH-A3EA-01 5 38881697 38881697 G A OSMR Silent p.G83G 0.41 TCGA-IH-A3EA-01 5 39203057 39203057 C T FYB Silent p.A12A 0.49 TCGA-IH-A3EA-01 5 39288904 39288904 C T C9 Missense_Mutation p.M522I 0.37 tolerated(0.64) benign(0) TCGA-IH-A3EA-01 5 40854101 40854101 C T CARD6 Silent p.S889S 0.39 TCGA-IH-A3EA-01 5 40947807 40947807 C T C7 Missense_Mutation p.S281F 0.36 deleterious(0.03) benign(0.072) TCGA-IH-A3EA-01 5 40976935 40976935 G A C7 Missense_Mutation p.E720K 0.50 deleterious(0) probably_damaging(0.962) TCGA-IH-A3EA-01 5 41153958 41153958 C T C6 Silent p.G748G 0.31 TCGA-IH-A3EA-01 5 41181619 41181619 C T C6 Missense_Mutation p.D257N 0.27 tolerated(0.16) benign(0.055) TCGA-IH-A3EA-01 5 42711356 42711356 G A GHR Silent p.V222V 0.38 TCGA-IH-A3EA-01 5 42807079 42807079 G A SEPP1 Missense_Mutation p.P112L 0.30 deleterious(0.02) probably_damaging(0.976) TCGA-IH-A3EA-01 5 49699150 49699150 C T EMB Missense_Mutation p.E247K 0.26 tolerated(0.62) benign(0.284) TCGA-IH-A3EA-01 5 50689478 50689478 G A ISL1 3'UTR 0.44 TCGA-IH-A3EA-01 5 54320183 54320183 C T GZMK Silent p.F11F 0.35 TCGA-IH-A3EA-01 5 54329647 54329647 G A GZMK Missense_Mutation p.G230R 0.34 tolerated(0.41) benign(0.08) TCGA-IH-A3EA-01 5 55109502 55109502 G A DDX4 Silent p.G539G 0.30 TCGA-IH-A3EA-01 5 57913682 57913682 C T RAB3C Silent p.I79I 0.56 TCGA-IH-A3EA-01 5 63509470 63509470 C T RNF180 Missense_Mutation p.S106F 0.35 deleterious(0.02) benign(0.061) TCGA-IH-A3EA-01 5 64447661 64447661 G A ADAMTS6 3'UTR 0.37 TCGA-IH-A3EA-01 5 66480342 66480342 C T CD180 Missense_Mutation p.G110E 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-IH-A3EA-01 5 79025799 79025799 G A CMYA5 Missense_Mutation p.G404E 0.43 benign(0) TCGA-IH-A3EA-01 5 80511759 80511759 G A RASGRF2 Missense_Mutation p.R1140K 0.18 deleterious(0.05) probably_damaging(0.996) TCGA-IH-A3EA-01 5 82875940 82875940 G A VCAN Missense_Mutation p.G3341E 0.38 deleterious(0) probably_damaging(0.955) TCGA-IH-A3EA-01 5 82940480 82940480 C T HAPLN1 Silent p.V159V 0.50 TCGA-IH-A3EA-01 5 89989980 89989980 G A GPR98 Nonsense_Mutation p.W2469* 0.38 TCGA-IH-A3EA-01 5 89990161 89990161 G A GPR98 Missense_Mutation p.D2530N 0.35 probably_damaging(0.956) TCGA-IH-A3EA-01 5 89990217 89990217 G A GPR98 Missense_Mutation p.M2548I 0.23 benign(0.38) TCGA-IH-A3EA-01 5 90086768 90086768 G A GPR98 Missense_Mutation p.G4708R 0.40 probably_damaging(0.996) TCGA-IH-A3EA-01 5 9119249 9119249 C T SEMA5A Missense_Mutation p.G596R 0.38 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 5 9136628 9136628 G A SEMA5A Silent p.I529I 0.39 TCGA-IH-A3EA-01 5 96430421 96430421 C T LIX1 3'UTR 0.27 TCGA-IH-A3EA-01 6 105573340 105573340 C T BVES Silent p.L155L 0.53 TCGA-IH-A3EA-01 6 106967087 106967087 T C AIM1 Silent p.F260F 0.56 TCGA-IH-A3EA-01 6 106967703 106967703 C T AIM1 Missense_Mutation p.L466F 0.53 tolerated_low_confidence(0.21) benign(0.004) TCGA-IH-A3EA-01 6 106967931 106967931 C T AIM1 Missense_Mutation p.P542S 0.69 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-IH-A3EA-01 6 107102665 107102665 C T QRSL1 Missense_Mutation p.L304F 0.56 tolerated(0.09) probably_damaging(0.962) TCGA-IH-A3EA-01 6 108042083 108042083 G A SCML4 Missense_Mutation p.S266L 0.67 tolerated(0.27) benign(0.013) TCGA-IH-A3EA-01 6 10928639 10928639 C T SYCP2L Nonsense_Mutation p.Q482* 0.68 TCGA-IH-A3EA-01 6 11191209 11191209 G A NEDD9 Missense_Mutation p.S298F 0.45 tolerated(0.36) benign(0.14) TCGA-IH-A3EA-01 6 117127686 117127686 C T GPRC6A Silent p.R394R 0.41 TCGA-IH-A3EA-01 6 117128105 117128105 C T GPRC6A Missense_Mutation p.E255K 0.57 tolerated(0.16) benign(0.022) TCGA-IH-A3EA-01 6 121768796 121768796 T C GJA1 Missense_Mutation p.F268S 0.35 tolerated(0.17) benign(0.011) TCGA-IH-A3EA-01 6 123319015 123319015 C T CLVS2 Silent p.I31I 0.47 TCGA-IH-A3EA-01 6 124979437 124979437 G A NKAIN2 Missense_Mutation p.A127T 0.60 tolerated(0.38) probably_damaging(0.999) TCGA-IH-A3EA-01 6 128306884 128306884 G A PTPRK Missense_Mutation p.P1084L 0.58 deleterious(0) probably_damaging(0.982) TCGA-IH-A3EA-01 6 129511477 129511477 G A LAMA2 Nonsense_Mutation p.W532* 0.59 TCGA-IH-A3EA-01 6 132207750 132207750 C T ENPP1 Silent p.F831F 0.50 TCGA-IH-A3EA-01 6 133035073 133035073 C T VNN1 Silent p.A34A 0.58 TCGA-IH-A3EA-01 6 136597406 136597406 C T BCLAF1 Silent p.Q419Q 0.19 TCGA-IH-A3EA-01 6 142736952 142736952 C T GPR126 Missense_Mutation p.P897S 0.64 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 6 159086469 159086469 G A SYTL3 Silent p.A51A 0.77 TCGA-IH-A3EA-01 6 160968945 160968945 C T LPA Missense_Mutation p.G1727E 0.54 tolerated(0.22) benign(0.407) TCGA-IH-A3EA-01 6 17799571 17799571 G A KIF13A Missense_Mutation p.P906S 0.32 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 6 20490545 20490545 C T E2F3 Missense_Mutation p.P428S 0.48 deleterious(0.04) probably_damaging(0.996) TCGA-IH-A3EA-01 6 22570050 22570050 C T HDGFL1 Silent p.I82I 0.76 TCGA-IH-A3EA-01 6 24596626 24596626 C T KIAA0319 Silent p.K92K 0.23 TCGA-IH-A3EA-01 6 25600813 25600813 T A LRRC16A Missense_Mutation p.S1131T 0.21 tolerated_low_confidence(0.08) benign(0.14) TCGA-IH-A3EA-01 6 25701643 25701643 G A SCGN 3'UTR 0.33 TCGA-IH-A3EA-01 6 25921449 25921449 C T SLC17A2 Silent p.V144V 0.20 TCGA-IH-A3EA-01 6 28497338 28497338 C T GPX5 Silent p.F66F 0.20 TCGA-IH-A3EA-01 6 29012589 29012589 G A OR2W1 Missense_Mutation p.R122C 0.17 deleterious(0.02) benign(0.022) TCGA-IH-A3EA-01 6 29012767 29012767 G A OR2W1 Silent p.F62F 0.68 TCGA-IH-A3EA-01 6 29054186 29054186 G A OR2B3 Silent p.I280I 0.67 TCGA-IH-A3EA-01 6 29274625 29274625 C T OR14J1 Silent p.L53L 0.85 TCGA-IH-A3EA-01 6 29430476 29430476 G A OR2H1 Silent p.R310R 0.20 TCGA-IH-A3EA-01 6 30131690 30131690 C T TRIM15 Missense_Mutation p.P77S 0.84 tolerated(0.16) benign(0.067) TCGA-IH-A3EA-01 6 30314530 30314530 C T RPP21 Silent p.S144S 0.57 TCGA-IH-A3EA-01 6 31084988 31084988 C T CDSN Missense_Mutation p.G135E 0.20 tolerated_low_confidence(0.38) unknown(0) TCGA-IH-A3EA-01 6 32037545 32037545 G A TNXB Missense_Mutation p.S1791F 0.27 probably_damaging(0.995) TCGA-IH-A3EA-01 6 32039945 32039945 G A TNXB Silent p.F1604F 0.61 TCGA-IH-A3EA-01 6 32039967 32039967 C T TNXB Nonsense_Mutation p.W1597* 0.75 TCGA-IH-A3EA-01 6 34003913 34003913 G A GRM4 Silent p.F658F 0.14 TCGA-IH-A3EA-01 6 34512051 34512051 G A SPDEF Missense_Mutation p.S61F 0.58 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-IH-A3EA-01 6 34937857 34937857 C T ANKS1A Silent p.L117L 0.20 TCGA-IH-A3EA-01 6 35919229 35919229 C T SLC26A8 Silent p.G760G 0.20 TCGA-IH-A3EA-01 6 38691134 38691134 G A DNAH8 5'UTR 0.83 TCGA-IH-A3EA-01 6 38843419 38843419 C T DNAH8 Missense_Mutation p.S2341F 0.18 benign(0.001) TCGA-IH-A3EA-01 6 39286823 39286823 G A KCNK16 Silent p.F100F 0.11 TCGA-IH-A3EA-01 6 39554141 39554141 G A KIF6 Missense_Mutation p.P296S 0.58 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 6 39607459 39607459 C T KIF6 Missense_Mutation p.G109E 0.18 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 6 39688490 39688490 C T KIF6 Missense_Mutation p.S55N 0.13 tolerated(0.35) benign(0.012) TCGA-IH-A3EA-01 6 407627 407627 T A IRF4 3'UTR 0.44 TCGA-IH-A3EA-01 6 41029198 41029198 G A APOBEC2 Missense_Mutation p.G88E 0.60 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 6 41197258 41197258 G A TREML4 Splice_Site p.X132_splice 0.41 TCGA-IH-A3EA-01 6 4131033 4131033 C T ECI2 Missense_Mutation p.D94N 0.22 tolerated(0.09) benign(0.096) TCGA-IH-A3EA-01 6 42235978 42235978 G A TRERF1 Missense_Mutation p.R451C 0.40 deleterious_low_confidence(0) benign(0.013) TCGA-IH-A3EA-01 6 43029218 43029218 C T KLC4 Nonsense_Mutation p.Q67* 0.24 TCGA-IH-A3EA-01 6 43154182 43154182 C T CUL9 Missense_Mutation p.P414S 0.20 deleterious(0) probably_damaging(0.989) TCGA-IH-A3EA-01 6 43466734 43466734 C T TJAP1 5'UTR 0.52 TCGA-IH-A3EA-01 6 46107842 46107842 G A ENPP4 Silent p.S174S 0.17 TCGA-IH-A3EA-01 6 46135214 46135214 G A ENPP5 Silent p.T262T 0.38 TCGA-IH-A3EA-01 6 46682265 46682265 C T PLA2G7 Nonsense_Mutation p.W134* 0.18 TCGA-IH-A3EA-01 6 47252065 47252065 C T TNFRSF21 Silent p.G284G 0.57 TCGA-IH-A3EA-01 6 47646828 47646828 C T GPR111 Silent p.I143I 0.54 TCGA-IH-A3EA-01 6 49696509 49696509 G A CRISP3 Silent p.T247T 0.27 TCGA-IH-A3EA-01 6 50681729 50681729 G A TFAP2D 5'UTR 0.17 TCGA-IH-A3EA-01 6 50805720 50805720 G A TFAP2B Missense_Mutation p.R285Q 0.40 deleterious(0) possibly_damaging(0.906) TCGA-IH-A3EA-01 6 51735315 51735315 A G PKHD1 Silent p.C2491C 0.18 TCGA-IH-A3EA-01 6 54254808 54254808 G A TINAG 3'UTR 0.25 TCGA-IH-A3EA-01 6 54805457 54805457 C T FAM83B Missense_Mutation p.S563F 0.21 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 6 55739228 55739228 G A BMP5 Missense_Mutation p.H146Y 0.60 deleterious(0) benign(0.217) TCGA-IH-A3EA-01 6 55739516 55739516 C T BMP5 Missense_Mutation p.E50K 0.55 deleterious(0) probably_damaging(0.985) TCGA-IH-A3EA-01 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.17 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 6 56029286 56029286 C T COL21A1 Missense_Mutation p.D436N 0.73 tolerated(0.13) possibly_damaging(0.76) TCGA-IH-A3EA-01 6 5771568 5771568 T A FARS2 Missense_Mutation p.M421K 0.62 deleterious(0.01) possibly_damaging(0.572) TCGA-IH-A3EA-01 6 6626600 6626600 C T LY86 Missense_Mutation p.P100S 0.18 tolerated(0.1) probably_damaging(1) TCGA-IH-A3EA-01 6 70964887 70964887 C T COL9A1 Missense_Mutation p.G526E 0.50 probably_damaging(0.999) TCGA-IH-A3EA-01 6 70966503 70966503 C T COL9A1 Missense_Mutation p.E491K 0.47 possibly_damaging(0.725) TCGA-IH-A3EA-01 6 7229527 7229527 C T RREB1 Nonsense_Mutation p.Q399* 0.70 TCGA-IH-A3EA-01 6 7229933 7229933 C T RREB1 Missense_Mutation p.S534F 0.27 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 6 7374083 7374083 G A CAGE1 Silent p.I323I 0.17 TCGA-IH-A3EA-01 6 7581755 7581755 G A DSP Missense_Mutation p.E1778K 0.20 benign(0.11) TCGA-IH-A3EA-01 6 7585365 7585365 G A DSP Missense_Mutation p.D2624N 0.40 probably_damaging(0.998) TCGA-IH-A3EA-01 6 79912032 79912032 A G HMGN3 Silent p.G74G 0.57 TCGA-IH-A3EA-01 6 89888625 89888625 G A GABRR1 Missense_Mutation p.S435F 0.58 tolerated(0.07) possibly_damaging(0.797) TCGA-IH-A3EA-01 6 90604820 90604820 C T GJA10 Silent p.F211F 0.53 TCGA-IH-A3EA-01 6 96651266 96651266 C T FUT9 Missense_Mutation p.L79F 0.58 tolerated(0.18) benign(0.174) TCGA-IH-A3EA-01 6 97053802 97053802 G A FHL5 Missense_Mutation p.G120E 0.55 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 7 100345948 100345948 G A ZAN Silent p.E368E 0.32 TCGA-IH-A3EA-01 7 100350431 100350431 C T ZAN Silent p.I901I 0.36 TCGA-IH-A3EA-01 7 100403206 100403206 G A EPHB4 Silent p.P865P 0.37 TCGA-IH-A3EA-01 7 100420164 100420164 C T EPHB4 Silent p.Q179Q 0.39 TCGA-IH-A3EA-01 7 100466372 100466372 G A TRIP6 Missense_Mutation p.E207K 0.50 tolerated(0.35) benign(0.242) TCGA-IH-A3EA-01 7 100679358 100679358 C T MUC17 Missense_Mutation p.S1554F 0.34 unknown(0) TCGA-IH-A3EA-01 7 100682001 100682001 G T MUC17 Missense_Mutation p.S2435I 0.33 probably_damaging(0.997) TCGA-IH-A3EA-01 7 100682004 100682004 C T MUC17 Missense_Mutation p.S2436L 0.31 probably_damaging(0.992) TCGA-IH-A3EA-01 7 101821817 101821817 C T CUX1 Silent p.I310I 0.25 TCGA-IH-A3EA-01 7 101960915 101960915 G A SH2B2 Missense_Mutation p.G544S 0.41 deleterious(0) possibly_damaging(0.796) TCGA-IH-A3EA-01 7 101960916 101960916 G A SH2B2 Missense_Mutation p.G544D 0.40 deleterious(0) possibly_damaging(0.898) TCGA-IH-A3EA-01 7 103143606 103143606 G A RELN Silent p.F2782F 0.39 TCGA-IH-A3EA-01 7 103206742 103206742 C T RELN Missense_Mutation p.R1622Q 0.39 tolerated(0.1) probably_damaging(0.992) TCGA-IH-A3EA-01 7 107580566 107580566 C T LAMB1 Missense_Mutation p.S1210N 0.37 deleterious(0.02) possibly_damaging(0.603) TCGA-IH-A3EA-01 7 107595973 107595973 C T LAMB1 Silent p.R931R 0.33 TCGA-IH-A3EA-01 7 112724282 112724282 G A GPR85 Silent p.F165F 0.16 TCGA-IH-A3EA-01 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.57 tolerated(0.12) benign(0.063) TCGA-IH-A3EA-01 7 114299467 114299467 T G FOXP2 Missense_Mutation p.Y534D 0.17 deleterious(0) unknown(0) TCGA-IH-A3EA-01 7 11630129 11630129 C T THSD7A Missense_Mutation p.E471K 0.18 tolerated(0.24) benign(0.047) TCGA-IH-A3EA-01 7 116339542 116339542 G A MET Missense_Mutation p.S135N 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-IH-A3EA-01 7 121701343 121701343 C T PTPRZ1 3'UTR 0.17 TCGA-IH-A3EA-01 7 123599666 123599666 C T SPAM1 Silent p.N391N 0.19 TCGA-IH-A3EA-01 7 12666399 12666399 T G SCIN Missense_Mutation p.V391G 0.35 deleterious(0) possibly_damaging(0.696) TCGA-IH-A3EA-01 7 128034608 128034608 G A IMPDH1 Silent p.I532I 0.63 TCGA-IH-A3EA-01 7 128119424 128119424 G A METTL2B Missense_Mutation p.E139K 0.08 tolerated(0.32) benign(0.23) TCGA-IH-A3EA-01 7 129856227 129856227 C T SSMEM1 Missense_Mutation p.P218S 0.20 tolerated(0.35) benign(0.005) TCGA-IH-A3EA-01 7 134225852 134225852 C T AKR1B10 3'UTR 0.43 TCGA-IH-A3EA-01 7 13935541 13935541 C T ETV1 Missense_Mutation p.E462K 0.27 deleterious(0) benign(0.237) TCGA-IH-A3EA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.60 deleterious(0) probably_damaging(0.967) TCGA-IH-A3EA-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.61 deleterious(0) possibly_damaging(0.838) TCGA-IH-A3EA-01 7 141735999 141735999 G A MGAM Missense_Mutation p.D664N 0.32 tolerated(0.56) benign(0.045) TCGA-IH-A3EA-01 7 141754666 141754666 C T MGAM Missense_Mutation p.P1091L 0.19 deleterious(0) possibly_damaging(0.835) TCGA-IH-A3EA-01 7 142000977 142000977 C T TRBV2 5'UTR 0.21 TCGA-IH-A3EA-01 7 142032474 142032474 C T TRBV7-1 Silent p.F98F 0.12 TCGA-IH-A3EA-01 7 142162336 142162336 C T TRBV6-6 Missense_Mutation p.A10T 0.15 tolerated(0.2) benign(0.068) TCGA-IH-A3EA-01 7 142180622 142180622 G A TRBV6-5 Silent p.V79V 0.14 TCGA-IH-A3EA-01 7 142206977 142206977 G A TRBV10-2 5'UTR 0.26 TCGA-IH-A3EA-01 7 142239650 142239650 C T TRBV9 Missense_Mutation p.G77E 0.13 deleterious(0.03) possibly_damaging(0.521) TCGA-IH-A3EA-01 7 142247184 142247184 C T TRBV7-3 Missense_Mutation p.G91E 0.44 TCGA-IH-A3EA-01 7 142458470 142458470 C T PRSS1 Silent p.V35V 0.48 TCGA-IH-A3EA-01 7 142575428 142575428 G A TRPV6 Missense_Mutation p.P109S 0.17 deleterious(0.03) benign(0.066) TCGA-IH-A3EA-01 7 142609794 142609794 C T TRPV5 Missense_Mutation p.D548N 0.20 tolerated(0.12) benign(0.066) TCGA-IH-A3EA-01 7 142723778 142723778 C T OR9A2 Missense_Mutation p.G148R 0.21 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 7 143013249 143013249 G T CLCN1 5'UTR 0.19 TCGA-IH-A3EA-01 7 143141130 143141130 C G TAS2R60 Missense_Mutation p.F195L 0.21 tolerated(0.67) possibly_damaging(0.766) TCGA-IH-A3EA-01 7 143792528 143792528 G A OR2A12 Missense_Mutation p.E110K 0.18 deleterious(0.01) probably_damaging(1) TCGA-IH-A3EA-01 7 143806751 143806751 C T OR2A2 Missense_Mutation p.L26F 0.40 deleterious(0.02) possibly_damaging(0.714) TCGA-IH-A3EA-01 7 143807098 143807098 G A OR2A2 Silent p.T141T 0.18 TCGA-IH-A3EA-01 7 144101747 144101747 G A NOBOX Missense_Mutation p.P38S 0.44 tolerated_low_confidence(0.4) benign(0) TCGA-IH-A3EA-01 7 147336367 147336367 C T CNTNAP2 Silent p.F689F 0.20 TCGA-IH-A3EA-01 7 147914489 147914489 G A CNTNAP2 Silent p.Q1040Q 0.37 TCGA-IH-A3EA-01 7 148947509 148947509 C T ZNF212 Missense_Mutation p.A95V 0.21 tolerated(0.25) possibly_damaging(0.796) TCGA-IH-A3EA-01 7 149517995 149517995 C T SSPO RNA 0.39 TCGA-IH-A3EA-01 7 149520459 149520459 C T SSPO RNA 0.16 TCGA-IH-A3EA-01 7 150027410 150027410 C T ZBED6CL 5'UTR 0.21 TCGA-IH-A3EA-01 7 150164375 150164375 G A GIMAP8 Missense_Mutation p.G197R 0.24 tolerated(0.49) benign(0.016) TCGA-IH-A3EA-01 7 150217285 150217285 G A GIMAP7 Missense_Mutation p.D75N 0.57 tolerated(0.52) benign(0.008) TCGA-IH-A3EA-01 7 150269665 150269665 G A GIMAP4 Silent p.R169R 0.57 TCGA-IH-A3EA-01 7 150269947 150269947 C T GIMAP4 Silent p.I263I 0.14 TCGA-IH-A3EA-01 7 150270156 150270156 G A GIMAP4 3'UTR 0.16 TCGA-IH-A3EA-01 7 150389873 150389873 G A GIMAP2 Missense_Mutation p.A167T 0.49 tolerated(0.13) benign(0.221) TCGA-IH-A3EA-01 7 150439698 150439698 G A GIMAP5 Silent p.G157G 0.18 TCGA-IH-A3EA-01 7 150704308 150704308 G A NOS3 Missense_Mutation p.D686N 0.19 deleterious(0) benign(0.418) TCGA-IH-A3EA-01 7 150767594 150767594 C T SLC4A2 Silent p.S500S 0.50 TCGA-IH-A3EA-01 7 150768656 150768656 G A SLC4A2 Missense_Mutation p.A719T 0.25 deleterious(0) probably_damaging(0.991) TCGA-IH-A3EA-01 7 151962208 151962208 G A KMT2C Missense_Mutation p.H367Y 0.09 probably_damaging(0.995) TCGA-IH-A3EA-01 7 155503962 155503970 GCAGCCGCT - RBM33 In_Frame_Del p.Q342_L344del 0.18 TCGA-IH-A3EA-01 7 157049715 157049715 C T UBE3C Nonsense_Mutation p.R1020* 0.59 TCGA-IH-A3EA-01 7 157873990 157873990 C T PTPRN2 Missense_Mutation p.V575I 0.20 tolerated(0.06) possibly_damaging(0.761) TCGA-IH-A3EA-01 7 157926718 157926718 G A PTPRN2 Silent p.L403L 0.60 TCGA-IH-A3EA-01 7 1579986 1579986 C T MAFK Missense_Mutation p.S149F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-IH-A3EA-01 7 20762649 20762649 C T ABCB5 Missense_Mutation p.S811F 0.29 tolerated(0.15) possibly_damaging(0.884) TCGA-IH-A3EA-01 7 21775320 21775320 G A DNAH11 Silent p.E2508E 0.59 TCGA-IH-A3EA-01 7 21857904 21857904 G A DNAH11 Silent p.T3553T 0.45 TCGA-IH-A3EA-01 7 23239112 23239112 A T NUPL2 Silent p.A215A 0.37 TCGA-IH-A3EA-01 7 23871893 23871893 A G STK31 Missense_Mutation p.T990A 0.15 tolerated_low_confidence(0.2) benign(0.003) TCGA-IH-A3EA-01 7 27283001 27283001 G A EVX1 Missense_Mutation p.D118N 0.15 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 7 2976739 2976739 C T CARD11 Missense_Mutation p.E425K 0.43 tolerated(0.06) possibly_damaging(0.57) TCGA-IH-A3EA-01 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.35 tolerated(0.19) benign(0.198) TCGA-IH-A3EA-01 7 31877510 31877510 C T PDE1C Missense_Mutation p.M412I 0.38 tolerated(0.09) possibly_damaging(0.506) TCGA-IH-A3EA-01 7 32598603 32598603 G A AVL9 Missense_Mutation p.D248N 0.36 tolerated(0.11) benign(0.038) TCGA-IH-A3EA-01 7 34094839 34094839 G A BMPER Missense_Mutation p.G284D 0.37 tolerated(0.59) benign(0.001) TCGA-IH-A3EA-01 7 38370206 38370206 C T TRGV8 Missense_Mutation p.R31K 0.32 tolerated(0.43) benign(0.024) TCGA-IH-A3EA-01 7 38402961 38402961 G A TRGV2 5'UTR 0.40 TCGA-IH-A3EA-01 7 40102429 40102429 C T CDK13 Missense_Mutation p.P869S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-IH-A3EA-01 7 4794954 4794954 G A FOXK1 Silent p.G330G 0.48 TCGA-IH-A3EA-01 7 4821370 4821370 C T AP5Z1 Silent p.S117S 0.24 TCGA-IH-A3EA-01 7 48335321 48335321 C T ABCA13 Missense_Mutation p.P2994S 0.26 benign(0.068) TCGA-IH-A3EA-01 7 48335322 48335322 C T ABCA13 Missense_Mutation p.P2994L 0.26 possibly_damaging(0.656) TCGA-IH-A3EA-01 7 50070776 50070776 T A ZPBP Silent p.S206S 0.47 TCGA-IH-A3EA-01 7 50450395 50450395 G A IKZF1 Silent p.R193R 0.36 TCGA-IH-A3EA-01 7 50605624 50605624 C T DDC Silent p.G123G 0.26 TCGA-IH-A3EA-01 7 55874943 55874943 C T SEPT14 Missense_Mutation p.E276K 0.33 deleterious(0.03) possibly_damaging(0.724) TCGA-IH-A3EA-01 7 6043355 6043355 G A PMS2 Missense_Mutation p.R107W 0.34 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 7 6080834 6080834 T C EIF2AK1 Missense_Mutation p.K270E 0.45 tolerated(0.42) benign(0.003) TCGA-IH-A3EA-01 7 64863251 64863251 C T ZNF92 Intron 0.23 TCGA-IH-A3EA-01 7 66410093 66410093 C T TMEM248 Missense_Mutation p.S97F 0.35 deleterious(0.01) possibly_damaging(0.503) TCGA-IH-A3EA-01 7 76955544 76955544 C T GSAP Silent p.R604R 0.36 TCGA-IH-A3EA-01 7 77010657 77010657 G A GSAP Missense_Mutation p.R181C 0.38 deleterious(0) possibly_damaging(0.711) TCGA-IH-A3EA-01 7 81381435 81381435 C T HGF Splice_Site p.X209_splice 0.28 TCGA-IH-A3EA-01 7 8198186 8198186 G C ICA1 Missense_Mutation p.L226V 0.43 deleterious(0) probably_damaging(0.955) TCGA-IH-A3EA-01 7 82544019 82544019 G A PCLO Missense_Mutation p.A4428V 0.22 unknown(0) TCGA-IH-A3EA-01 7 82579012 82579012 G A PCLO Missense_Mutation p.S3631L 0.29 unknown(0) TCGA-IH-A3EA-01 7 82586179 82586179 C T PCLO Missense_Mutation p.G1364R 0.44 unknown(0) TCGA-IH-A3EA-01 7 82784609 82784609 G A PCLO Missense_Mutation p.P450S 0.31 possibly_damaging(0.803) TCGA-IH-A3EA-01 7 82996972 82996972 T C SEMA3E Missense_Mutation p.N753S 0.34 tolerated(0.85) benign(0.001) TCGA-IH-A3EA-01 7 87145973 87145973 G A ABCB1 Missense_Mutation p.S979L 0.31 deleterious(0.02) benign(0.148) TCGA-IH-A3EA-01 7 87370852 87370852 C T RUNDC3B Missense_Mutation p.P213S 0.30 deleterious(0.03) benign(0.298) TCGA-IH-A3EA-01 7 88965039 88965039 A C ZNF804B Missense_Mutation p.T915P 0.44 deleterious(0.04) benign(0) TCGA-IH-A3EA-01 7 91714867 91714867 C T AKAP9 Missense_Mutation p.P2964L 0.26 possibly_damaging(0.864) TCGA-IH-A3EA-01 7 92762104 92762104 C T SAMD9L Missense_Mutation p.A1061T 0.33 tolerated(0.2) benign(0.044) TCGA-IH-A3EA-01 7 93073020 93073020 T C CALCR Missense_Mutation p.N267S 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-IH-A3EA-01 7 95813738 95813738 G A SLC25A13 Missense_Mutation p.A344V 0.30 deleterious(0) possibly_damaging(0.897) TCGA-IH-A3EA-01 7 96746921 96746921 G T ACN9 5'UTR 0.36 TCGA-IH-A3EA-01 7 99315192 99315192 C T CYP3A7 Missense_Mutation p.R130Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 7 99381714 99381714 C T CYP3A4 5'UTR 0.32 TCGA-IH-A3EA-01 7 99569423 99569423 C T AZGP1 Missense_Mutation p.D95N 0.35 deleterious(0.03) benign(0.108) TCGA-IH-A3EA-01 8 101596393 101596393 C T SNX31 Silent p.L372L 0.80 TCGA-IH-A3EA-01 8 102555649 102555649 C T GRHL2 Silent p.L67L 0.25 TCGA-IH-A3EA-01 8 10469216 10469216 C T RP1L1 Missense_Mutation p.D798N 0.63 benign(0.142) TCGA-IH-A3EA-01 8 106813782 106813782 C T ZFPM2 Missense_Mutation p.S491F 0.30 deleterious(0.03) benign(0.229) TCGA-IH-A3EA-01 8 106814626 106814626 C T ZFPM2 Silent p.S772S 0.73 TCGA-IH-A3EA-01 8 106815108 106815108 C T ZFPM2 Missense_Mutation p.S933L 0.70 tolerated_low_confidence(0.08) benign(0.4) TCGA-IH-A3EA-01 8 113314071 113314071 C T CSMD3 Silent p.R2797R 0.16 TCGA-IH-A3EA-01 8 11400788 11400788 G A BLK Missense_Mutation p.D19N 0.58 tolerated(0.33) benign(0.011) TCGA-IH-A3EA-01 8 11407759 11407759 G A BLK Missense_Mutation p.E154K 0.50 deleterious(0.01) possibly_damaging(0.531) TCGA-IH-A3EA-01 8 117868435 117868435 C G RAD21 Missense_Mutation p.A303P 0.05 deleterious(0.01) possibly_damaging(0.548) TCGA-IH-A3EA-01 8 121379428 121379428 G A COL14A1 Missense_Mutation p.G1699E 0.74 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 8 123964332 123964332 G A ZHX2 Silent p.A194A 0.23 TCGA-IH-A3EA-01 8 123965716 123965716 C T ZHX2 Nonsense_Mutation p.Q656* 0.20 TCGA-IH-A3EA-01 8 124195386 124195386 C T FAM83A Missense_Mutation p.S97F 0.92 deleterious(0.04) possibly_damaging(0.83) TCGA-IH-A3EA-01 8 125103777 125103777 G A FER1L6 Missense_Mutation p.G1502E 0.23 tolerated(0.06) probably_damaging(0.964) TCGA-IH-A3EA-01 8 128429119 128429119 C T POU5F1B Silent p.V336V 1.00 TCGA-IH-A3EA-01 8 131812737 131812737 C T ADCY8 Missense_Mutation p.E999K 0.74 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 8 131922026 131922026 C T ADCY8 Missense_Mutation p.R523K 0.74 tolerated(0.05) probably_damaging(0.989) TCGA-IH-A3EA-01 8 133152388 133152388 G A KCNQ3 Silent p.G501G 0.75 TCGA-IH-A3EA-01 8 139164029 139164029 G A FAM135B Missense_Mutation p.H897Y 0.76 tolerated_low_confidence(0.31) benign(0.081) TCGA-IH-A3EA-01 8 142148162 142148162 C T DENND3 Missense_Mutation p.H63Y 0.81 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 8 142195337 142195337 C G DENND3 Missense_Mutation p.T935S 0.72 tolerated(1) benign(0.027) TCGA-IH-A3EA-01 8 143603417 143603417 C T BAI1 Missense_Mutation p.A1039V 0.19 deleterious(0) benign(0.001) TCGA-IH-A3EA-01 8 144886751 144886751 G A SCRIB Missense_Mutation p.P999L 0.83 probably_damaging(0.962) TCGA-IH-A3EA-01 8 144940169 144940169 G A EPPK1 Missense_Mutation p.S2418F 1.00 benign(0.121) TCGA-IH-A3EA-01 8 144946973 144946973 C T EPPK1 Nonsense_Mutation p.W150* 0.83 TCGA-IH-A3EA-01 8 17941583 17941583 C G ASAH1 Intron 0.50 TCGA-IH-A3EA-01 8 22033807 22033807 C T BMP1 Silent p.V138V 0.53 TCGA-IH-A3EA-01 8 23217758 23217758 G A LOXL2 Missense_Mutation p.L126F 0.52 deleterious(0) possibly_damaging(0.493) TCGA-IH-A3EA-01 8 24167439 24167439 G A ADAM28 Missense_Mutation p.M61I 0.42 tolerated(0.39) benign(0.032) TCGA-IH-A3EA-01 8 25708206 25708206 G A EBF2 Missense_Mutation p.P534S 0.62 tolerated_low_confidence(1) probably_damaging(0.968) TCGA-IH-A3EA-01 8 27311744 27311744 C T PTK2B Missense_Mutation p.A890V 0.66 tolerated(0.17) benign(0.163) TCGA-IH-A3EA-01 8 2806826 2806826 C T CSMD1 Missense_Mutation p.R3466K 0.58 benign(0.046) TCGA-IH-A3EA-01 8 29194925 29194925 G A DUSP4 Missense_Mutation p.A268V 0.46 tolerated(0.06) benign(0.016) TCGA-IH-A3EA-01 8 30601792 30601792 T A UBXN8 RNA 0.61 TCGA-IH-A3EA-01 8 32621534 32621534 C T NRG1 Missense_Mutation p.P518S 0.45 deleterious(0) probably_damaging(0.999) TCGA-IH-A3EA-01 8 39602352 39602352 G A ADAM2 3'UTR 0.48 TCGA-IH-A3EA-01 8 40011101 40011101 G A C8orf4 Missense_Mutation p.R17Q 0.59 deleterious(0.03) probably_damaging(0.975) TCGA-IH-A3EA-01 8 48883186 48883186 C T MCM4 Missense_Mutation p.S517F 0.17 deleterious(0) probably_damaging(0.998) TCGA-IH-A3EA-01 8 48883187 48883187 C T MCM4 Silent p.S517S 0.17 TCGA-IH-A3EA-01 8 52321563 52321563 G A PXDNL Missense_Mutation p.P874L 0.81 deleterious(0) benign(0.103) TCGA-IH-A3EA-01 8 53071640 53071640 G A ST18 Missense_Mutation p.P542S 0.70 tolerated(0.76) benign(0.07) TCGA-IH-A3EA-01 8 53573162 53573162 G A RB1CC1 Silent p.S561S 0.19 TCGA-IH-A3EA-01 8 55539327 55539327 G A RP1 Missense_Mutation p.G962E 0.63 tolerated(0.85) benign(0.006) TCGA-IH-A3EA-01 8 55539841 55539841 C T RP1 Silent p.L1133L 0.73 TCGA-IH-A3EA-01 8 6679422 6679422 G A XKR5 RNA 0.73 TCGA-IH-A3EA-01 8 67039647 67039647 G A TRIM55 Silent p.R48R 0.80 TCGA-IH-A3EA-01 8 67066540 67066540 G A TRIM55 Missense_Mutation p.E499K 0.72 deleterious_low_confidence(0.01) benign(0.146) TCGA-IH-A3EA-01 8 67089128 67089128 C T CRH Silent p.G195G 0.76 TCGA-IH-A3EA-01 8 68170430 68170430 G A ARFGEF1 Silent p.F777F 0.77 TCGA-IH-A3EA-01 8 68950487 68950487 C T PREX2 Missense_Mutation p.L267F 0.89 deleterious(0) probably_damaging(0.942) TCGA-IH-A3EA-01 8 69380947 69380947 C T C8orf34 Missense_Mutation p.P210S 0.76 tolerated(0.17) benign(0.23) TCGA-IH-A3EA-01 8 73849579 73849579 G A KCNB2 Silent p.R663R 0.90 TCGA-IH-A3EA-01 8 75227464 75227464 G A JPH1 Silent p.I257I 0.82 TCGA-IH-A3EA-01 8 76463687 76463687 C T HNF4G Silent p.P139P 0.28 TCGA-IH-A3EA-01 8 77767811 77767811 G A ZFHX4 Missense_Mutation p.S2885N 0.29 benign(0.12) TCGA-IH-A3EA-01 8 86163066 86163066 C T CA13 Silent p.L45L 0.53 TCGA-IH-A3EA-01 8 87623858 87623858 C T CNGB3 Silent p.L540L 0.73 TCGA-IH-A3EA-01 8 92365156 92365156 G A SLC26A7 Missense_Mutation p.G416R 0.84 deleterious(0.03) probably_damaging(0.996) TCGA-IH-A3EA-01 9 100080766 100080766 T C CCDC180 Silent p.S371S 0.48 TCGA-IH-A3EA-01 9 104086374 104086374 C T LPPR1 3'UTR 0.47 TCGA-IH-A3EA-01 9 107288684 107288684 C T OR13C4 Silent p.G269G 0.64 TCGA-IH-A3EA-01 9 107457492 107457492 G A OR13D1 Missense_Mutation p.E264K 0.61 deleterious(0.02) benign(0.17) TCGA-IH-A3EA-01 9 111903822 111903822 G A FRRS1L Silent p.V221V 0.35 TCGA-IH-A3EA-01 9 111945034 111945034 G A EPB41L4B Missense_Mutation p.T821I 0.30 deleterious_low_confidence(0) benign(0.005) TCGA-IH-A3EA-01 9 112144689 112144689 G A PTPN3 Silent p.V807V 0.31 TCGA-IH-A3EA-01 9 113065932 113065932 G A TXNDC8 3'UTR 0.43 TCGA-IH-A3EA-01 9 113637798 113637798 T A LPAR1 Missense_Mutation p.N333I 0.20 tolerated(0.12) benign(0.039) TCGA-IH-A3EA-01 9 115759671 115759671 A C ZNF883 RNA 0.28 TCGA-IH-A3EA-01 9 115812134 115812134 G A ZFP37 Missense_Mutation p.P51S 0.35 deleterious(0.04) possibly_damaging(0.874) TCGA-IH-A3EA-01 9 117050993 117050993 T G COL27A1 Silent p.G1352G 0.41 TCGA-IH-A3EA-01 9 117666537 117666537 G A TNFSF8 Nonsense_Mutation p.Q127* 0.33 TCGA-IH-A3EA-01 9 118997498 118997498 C T PAPPA Missense_Mutation p.P772S 0.32 tolerated(0.69) possibly_damaging(0.641) TCGA-IH-A3EA-01 9 118997664 118997664 C T PAPPA Missense_Mutation p.S827F 0.27 deleterious(0.04) possibly_damaging(0.485) TCGA-IH-A3EA-01 9 119028185 119028185 G A PAPPA Missense_Mutation p.G928R 0.34 tolerated(0.12) benign(0.023) TCGA-IH-A3EA-01 9 121976282 121976282 G A BRINP1 Silent p.P279P 0.28 TCGA-IH-A3EA-01 9 123758578 123758578 G A C5 Missense_Mutation p.P931S 0.34 deleterious(0) possibly_damaging(0.901) TCGA-IH-A3EA-01 9 123858837 123858837 C T CNTRL Missense_Mutation p.S206L 0.27 probably_damaging(0.971) TCGA-IH-A3EA-01 9 124929074 124929074 C T MORN5 Silent p.L25L 0.27 TCGA-IH-A3EA-01 9 125316128 125316128 C T OR1N2 Missense_Mutation p.P227L 0.28 deleterious(0) possibly_damaging(0.842) TCGA-IH-A3EA-01 9 125329866 125329866 C T OR1L8 Silent p.L297L 0.33 TCGA-IH-A3EA-01 9 125424891 125424891 T C OR1L1 Silent p.G299G 0.31 TCGA-IH-A3EA-01 9 127563717 127563717 G A OLFML2A Missense_Mutation p.D232N 0.30 tolerated(0.18) benign(0.055) TCGA-IH-A3EA-01 9 130117739 130117739 C T GARNL3 Silent p.F641F 0.32 TCGA-IH-A3EA-01 9 130280114 130280114 G C FAM129B Missense_Mutation p.N232K 0.28 tolerated(0.07) benign(0.065) TCGA-IH-A3EA-01 9 131030734 131030734 G A GOLGA2 Missense_Mutation p.P93S 0.33 tolerated(0.1) benign(0.049) TCGA-IH-A3EA-01 9 131469542 131469542 C T PKN3 Silent p.L231L 0.22 TCGA-IH-A3EA-01 9 133917055 133917055 G A LAMC3 Missense_Mutation p.D439N 0.30 deleterious(0.01) benign(0.395) TCGA-IH-A3EA-01 9 136898795 136898795 A T BRD3 Missense_Mutation p.S700T 0.55 tolerated(0.07) unknown(0) TCGA-IH-A3EA-01 9 136898796 136898796 C T BRD3 Silent p.P699P 0.45 TCGA-IH-A3EA-01 9 136913436 136913436 G A BRD3 Silent p.P285P 0.34 TCGA-IH-A3EA-01 9 137620588 137620588 G A COL5A1 Missense_Mutation p.G287R 0.37 probably_damaging(0.93) TCGA-IH-A3EA-01 9 137772724 137772724 C T FCN2 Silent p.F19F 0.38 TCGA-IH-A3EA-01 9 138395367 138395367 C T MRPS2 Intron 0.32 TCGA-IH-A3EA-01 9 138647015 138647015 G A KCNT1 Silent p.Q180Q 0.43 TCGA-IH-A3EA-01 9 138662931 138662931 C T KCNT1 Silent p.I666I 0.42 TCGA-IH-A3EA-01 9 138670542 138670542 G A KCNT1 Missense_Mutation p.S868N 0.35 tolerated(0.27) benign(0.008) TCGA-IH-A3EA-01 9 139101119 139101119 G A QSOX2 Missense_Mutation p.H518Y 0.42 deleterious(0.05) possibly_damaging(0.79) TCGA-IH-A3EA-01 9 139733736 139733736 C T RABL6 Missense_Mutation p.P520L 0.40 tolerated_low_confidence(0.27) unknown(0) TCGA-IH-A3EA-01 9 139756759 139756759 C T EDF1 Missense_Mutation p.E142K 0.35 tolerated(0.11) benign(0.002) TCGA-IH-A3EA-01 9 140510306 140510306 G A C9orf37 Missense_Mutation p.L116F 0.33 tolerated_low_confidence(0.67) benign(0.001) TCGA-IH-A3EA-01 9 140777335 140777335 G A CACNA1B Missense_Mutation p.G177E 0.16 deleterious(0) possibly_damaging(0.667) TCGA-IH-A3EA-01 9 14747031 14747031 G A FREM1 Missense_Mutation p.P2010S 0.20 tolerated(0.07) benign(0.034) TCGA-IH-A3EA-01 9 14748562 14748562 G A FREM1 Missense_Mutation p.P1878L 0.32 tolerated(0.31) benign(0.045) TCGA-IH-A3EA-01 9 16437221 16437221 G A BNC2 Missense_Mutation p.P324L 0.35 deleterious(0) probably_damaging(0.927) TCGA-IH-A3EA-01 9 17795603 17795603 G A SH3GL2 Silent p.G307G 0.28 TCGA-IH-A3EA-01 9 17795604 17795604 G A SH3GL2 Missense_Mutation p.E308K 0.28 deleterious(0) possibly_damaging(0.832) TCGA-IH-A3EA-01 9 17795682 17795682 G A SH3GL2 Missense_Mutation p.G334S 0.29 deleterious(0.03) probably_damaging(1) TCGA-IH-A3EA-01 9 18927972 18927972 C T FAM154A 3'UTR 0.29 TCGA-IH-A3EA-01 9 21141573 21141573 G A IFNW1 5'UTR 0.37 TCGA-IH-A3EA-01 9 32631980 32631980 G A TAF1L Missense_Mutation p.R1200C 0.39 deleterious(0) possibly_damaging(0.75) TCGA-IH-A3EA-01 9 33442887 33442887 G A AQP3 Missense_Mutation p.S152F 0.37 deleterious(0.01) possibly_damaging(0.882) TCGA-IH-A3EA-01 9 35043234 35043234 A G C9orf131 Missense_Mutation p.H203R 0.21 deleterious(0) probably_damaging(0.996) TCGA-IH-A3EA-01 9 35045502 35045502 G A C9orf131 Missense_Mutation p.G959E 0.34 tolerated(0.08) benign(0.063) TCGA-IH-A3EA-01 9 37498194 37498194 C T POLR1E Nonsense_Mutation p.R287* 0.42 TCGA-IH-A3EA-01 9 37708421 37708421 C T FRMPD1 Silent p.F95F 0.39 TCGA-IH-A3EA-01 9 3829438 3829438 C T GLIS3 Missense_Mutation p.R843K 0.28 tolerated(0.46) probably_damaging(0.984) TCGA-IH-A3EA-01 9 43709740 43709740 C T CNTNAP3B Missense_Mutation p.S59L 0.39 deleterious(0) benign(0.232) TCGA-IH-A3EA-01 9 6588622 6588622 G A GLDC Missense_Mutation p.P554L 0.33 deleterious(0) possibly_damaging(0.642) TCGA-IH-A3EA-01 9 6588623 6588623 G A GLDC Missense_Mutation p.P554S 0.33 tolerated(0.1) benign(0.11) TCGA-IH-A3EA-01 9 72046288 72046288 C T APBA1 Silent p.A823A 0.30 TCGA-IH-A3EA-01 9 73151674 73151674 G A TRPM3 Missense_Mutation p.P1440L 0.32 tolerated_low_confidence(0.33) benign(0) TCGA-IH-A3EA-01 9 73376484 73376484 G A TRPM3 Intron 0.36 TCGA-IH-A3EA-01 9 8317926 8317926 G A PTPRD Missense_Mutation p.S1896F 0.31 deleterious(0) possibly_damaging(0.633) TCGA-IH-A3EA-01 9 8465562 8465562 C T PTPRD Silent p.G1206G 0.35 TCGA-IH-A3EA-01 9 91652971 91652971 A T SHC3 Missense_Mutation p.F531L 0.65 deleterious(0) possibly_damaging(0.507) TCGA-IH-A3EA-01 9 93650053 93650053 C T SYK Missense_Mutation p.P535L 0.60 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 9 94487012 94487012 C T ROR2 Silent p.E588E 0.65 TCGA-IH-A3EA-01 9 97081303 97081303 G A NUTM2F Missense_Mutation p.S572F 0.60 deleterious(0.01) benign(0.005) TCGA-IH-A3EA-01 9 97522337 97522337 C G C9orf3 Nonsense_Mutation p.S91* 0.49 TCGA-IH-A3EA-01 X 101396257 101396257 C T TCEAL6 Missense_Mutation p.G16E 0.83 tolerated(0.12) benign(0.039) TCGA-IH-A3EA-01 X 101408958 101408958 G A BEX5 Missense_Mutation p.L94F 0.67 tolerated(0.18) probably_damaging(0.999) TCGA-IH-A3EA-01 X 101576780 101576780 C T NXF2 Missense_Mutation p.P426S 0.24 tolerated(0.09) benign(0.326) TCGA-IH-A3EA-01 X 105193708 105193708 G A NRK Missense_Mutation p.D1500N 0.83 deleterious(0.02) benign(0.002) TCGA-IH-A3EA-01 X 107381055 107381055 C T ATG4A Missense_Mutation p.P190L 0.65 tolerated(0.12) possibly_damaging(0.608) TCGA-IH-A3EA-01 X 110459717 110459717 C T PAK3 Silent p.F528F 0.75 TCGA-IH-A3EA-01 X 115304184 115304184 C T AGTR2 Silent p.I217I 0.73 TCGA-IH-A3EA-01 X 128624170 128624170 C T SMARCA1 Splice_Site p.X606_splice 0.57 TCGA-IH-A3EA-01 X 12904243 12904243 T C TLR7 Silent p.L206L 0.67 TCGA-IH-A3EA-01 X 129518641 129518641 C T GPR119 Missense_Mutation p.E261K 0.68 tolerated(0.12) possibly_damaging(0.673) TCGA-IH-A3EA-01 X 132160034 132160034 T G USP26 Missense_Mutation p.T739P 0.73 tolerated(0.23) benign(0.043) TCGA-IH-A3EA-01 X 135496364 135496364 G A GPR112 Missense_Mutation p.G3028E 0.73 deleterious(0) benign(0.052) TCGA-IH-A3EA-01 X 137785187 137785187 G A FGF13 Silent p.L131L 0.57 TCGA-IH-A3EA-01 X 13786245 13786245 A G OFD1 Missense_Mutation p.N944D 0.63 tolerated(0.62) possibly_damaging(0.486) TCGA-IH-A3EA-01 X 139866196 139866196 C T CDR1 Silent p.L112L 0.73 TCGA-IH-A3EA-01 X 139866294 139866294 C T CDR1 Missense_Mutation p.D80N 0.58 tolerated(0.11) possibly_damaging(0.728) TCGA-IH-A3EA-01 X 140785830 140785830 G A SPANXD Missense_Mutation p.S29L 0.27 tolerated_low_confidence(0.08) benign(0.038) TCGA-IH-A3EA-01 X 141290653 141290653 C T MAGEC2 Silent p.%3D 0.72 TCGA-IH-A3EA-01 X 142795280 142795280 C T SPANXN2 Missense_Mutation p.G133E 0.48 deleterious(0.05) unknown(0) TCGA-IH-A3EA-01 X 142967226 142967226 C T UBE2NL Silent p.I8I 0.75 TCGA-IH-A3EA-01 X 14627259 14627259 G A GLRA2 Missense_Mutation p.A288T 0.14 deleterious(0.01) probably_damaging(0.928) TCGA-IH-A3EA-01 X 150912931 150912931 G A CNGA2 Silent p.G652G 0.64 TCGA-IH-A3EA-01 X 151092688 151092688 C A MAGEA4 Silent p.G184G 0.78 TCGA-IH-A3EA-01 X 151818999 151818999 C T GABRQ Missense_Mutation p.S286L 0.69 deleterious(0) probably_damaging(0.967) TCGA-IH-A3EA-01 X 151821611 151821611 C T GABRQ Missense_Mutation p.S589F 0.65 deleterious(0) possibly_damaging(0.837) TCGA-IH-A3EA-01 X 151935724 151935724 G A MAGEA3 Missense_Mutation p.P148L 0.68 deleterious(0.05) benign(0.285) TCGA-IH-A3EA-01 X 152937353 152937353 G A PNCK Silent p.I215I 0.70 TCGA-IH-A3EA-01 X 153699493 153699493 C T PLXNA3 Silent p.F1734F 0.77 TCGA-IH-A3EA-01 X 154293955 154293955 T G MTCP1 Missense_Mutation p.Y72S 0.73 tolerated(0.12) benign(0.062) TCGA-IH-A3EA-01 X 18260595 18260595 C T SCML2 Silent p.Q646Q 0.63 TCGA-IH-A3EA-01 X 24073068 24073068 C T EIF2S3 5'UTR 0.80 TCGA-IH-A3EA-01 X 26157909 26157909 C T MAGEB18 Silent p.F269F 0.63 TCGA-IH-A3EA-01 X 27998105 27998105 C T DCAF8L1 Silent p.R449R 0.93 TCGA-IH-A3EA-01 X 30260934 30260934 G A MAGEB4 Missense_Mutation p.G228R 0.62 tolerated(0.18) probably_damaging(0.956) TCGA-IH-A3EA-01 X 30578348 30578348 G A CXorf21 Missense_Mutation p.S42F 0.74 tolerated(0.08) benign(0.143) TCGA-IH-A3EA-01 X 34149994 34149994 G A FAM47A Silent p.Y134Y 0.63 TCGA-IH-A3EA-01 X 44108098 44108098 C T EFHC2 Missense_Mutation p.G308D 0.70 deleterious(0.02) benign(0.167) TCGA-IH-A3EA-01 X 46466476 46466476 C T SLC9A7 Missense_Mutation p.E697K 0.89 deleterious(0.02) benign(0.437) TCGA-IH-A3EA-01 X 47774667 47774667 C T ZNF81 Missense_Mutation p.H208Y 0.81 tolerated(0.26) benign(0.329) TCGA-IH-A3EA-01 X 48126364 48126364 C T SSX1 3'UTR 0.68 TCGA-IH-A3EA-01 X 48214139 48214139 C T SSX3 Missense_Mutation p.E38K 0.91 tolerated(0.15) benign(0.016) TCGA-IH-A3EA-01 X 48820004 48820004 G A KCND1 Silent p.F594F 0.53 TCGA-IH-A3EA-01 X 49855477 49855477 C T CLCN5 Missense_Mutation p.P765L 0.74 deleterious(0) probably_damaging(0.929) TCGA-IH-A3EA-01 X 50339806 50339806 C T SHROOM4 Missense_Mutation p.M1457I 0.70 deleterious(0) probably_damaging(0.983) TCGA-IH-A3EA-01 X 50377795 50377795 A C SHROOM4 Silent p.L426L 0.73 TCGA-IH-A3EA-01 X 50438877 50438877 T C SHROOM4 Missense_Mutation p.N60D 0.58 deleterious(0) probably_damaging(1) TCGA-IH-A3EA-01 X 51644837 51644837 C T MAGED1 Silent p.T772T 0.72 TCGA-IH-A3EA-01 X 54776409 54776409 G A ITIH6 Silent p.P1287P 0.60 TCGA-IH-A3EA-01 X 54956639 54956639 G C TRO Missense_Mutation p.S1161T 0.69 deleterious(0.01) probably_damaging(0.952) TCGA-IH-A3EA-01 X 55047556 55047556 C T ALAS2 Silent p.K189K 0.68 TCGA-IH-A3EA-01 X 5821662 5821662 G A NLGN4X Missense_Mutation p.P353S 0.67 deleterious(0) probably_damaging(0.997) TCGA-IH-A3EA-01 X 65476088 65476088 G A HEPH Missense_Mutation p.E992K 0.69 deleterious(0.02) possibly_damaging(0.78) TCGA-IH-A3EA-01 X 67939074 67939074 C T STARD8 Missense_Mutation p.R575C 0.74 deleterious(0.01) probably_damaging(0.977) TCGA-IH-A3EA-01 X 68725644 68725644 C T FAM155B Silent p.S173S 0.67 TCGA-IH-A3EA-01 X 69282627 69282627 G A OTUD6A Missense_Mutation p.E85K 0.78 deleterious(0.04) possibly_damaging(0.889) TCGA-IH-A3EA-01 X 73045961 73045961 G A XIST RNA 0.64 TCGA-IH-A3EA-01 X 73049010 73049010 G A XIST RNA 0.65 TCGA-IH-A3EA-01 X 73065638 73065638 G A XIST RNA 0.56 TCGA-IH-A3EA-01 X 73066020 73066020 G A XIST RNA 0.63 TCGA-IH-A3EA-01 X 73960802 73960802 C T KIAA2022 Missense_Mutation p.R1197K 0.71 tolerated(0.32) benign(0.019) TCGA-IH-A3EA-01 X 73962063 73962063 G A KIAA2022 Missense_Mutation p.H777Y 0.65 tolerated(0.12) benign(0.221) TCGA-IH-A3EA-01 X 78010384 78010384 C T LPAR4 Silent p.F6F 0.81 TCGA-IH-A3EA-01 X 85769328 85769328 G A DACH2 Missense_Mutation p.E192K 0.73 deleterious(0.01) benign(0.065) TCGA-LH-A9QB-06 10 101571355 101571355 C T ABCC2 Nonsense_Mutation p.R655* 0.37 TCGA-LH-A9QB-06 10 106927046 106927046 C T SORCS3 Silent p.L614L 0.41 TCGA-LH-A9QB-06 10 119003756 119003756 T G SLC18A2 Silent p.G132G 0.38 TCGA-LH-A9QB-06 10 120353696 120353696 G A PRLHR Missense_Mutation p.P354L 0.42 tolerated(0.11) benign(0.191) TCGA-LH-A9QB-06 10 124345745 124345745 C T DMBT1 Silent p.A543A 0.48 TCGA-LH-A9QB-06 10 14939203 14939203 C T SUV39H2 Missense_Mutation p.P179L 0.36 tolerated(0.2) probably_damaging(0.999) TCGA-LH-A9QB-06 10 27687450 27687450 G A PTCHD3 Missense_Mutation p.L693F 0.46 tolerated(0.12) benign(0.02) TCGA-LH-A9QB-06 10 35929126 35929126 G A FZD8 Missense_Mutation p.S411F 0.49 deleterious(0) probably_damaging(0.997) TCGA-LH-A9QB-06 10 5567289 5567289 G A CALML3 Missense_Mutation p.D81N 0.40 deleterious_low_confidence(0.03) benign(0.04) TCGA-LH-A9QB-06 10 58117828 58117828 C T ZWINT 3'UTR 0.48 TCGA-LH-A9QB-06 10 58117829 58117829 C T ZWINT 3'UTR 0.48 TCGA-LH-A9QB-06 10 95085660 95085660 G A MYOF Missense_Mutation p.L1732F 0.40 deleterious(0) probably_damaging(0.999) TCGA-LH-A9QB-06 10 95287716 95287716 C T CEP55 Missense_Mutation p.H401Y 0.40 tolerated(0.19) benign(0.014) TCGA-LH-A9QB-06 10 95400691 95400691 G A PDE6C Silent p.K584K 0.49 TCGA-LH-A9QB-06 10 98155765 98155765 C T TLL2 Missense_Mutation p.G466E 0.41 deleterious(0) probably_damaging(0.999) TCGA-LH-A9QB-06 11 108198485 108198485 G T ATM Missense_Mutation p.K2363N 0.78 deleterious(0) possibly_damaging(0.856) TCGA-LH-A9QB-06 11 111754520 111754520 C T C11orf1 Silent p.F123F 0.94 TCGA-LH-A9QB-06 11 118081291 118081291 C T AMICA1 Missense_Mutation p.G112E 0.94 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 11 1217144 1217144 C T MUC5AC RNA 0.45 TCGA-LH-A9QB-06 11 124189314 124189314 G A OR8D2 Silent p.F260F 0.76 TCGA-LH-A9QB-06 11 1309950 1309950 G A TOLLIP Silent p.S141S 0.38 TCGA-LH-A9QB-06 11 1475824 1475824 C G BRSK2 Missense_Mutation p.H598D 0.42 deleterious(0) possibly_damaging(0.457) TCGA-LH-A9QB-06 11 294416 294416 C T ATHL1 Missense_Mutation p.P653L 0.41 deleterious(0.02) possibly_damaging(0.689) TCGA-LH-A9QB-06 11 4674410 4674410 C T OR51E1 Silent p.S218S 0.40 TCGA-LH-A9QB-06 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.55 tolerated(0.09) benign(0.141) TCGA-LH-A9QB-06 11 4967689 4967689 G A OR51A4 Silent p.L214L 0.44 TCGA-LH-A9QB-06 11 55135808 55135808 G A OR4A15 Missense_Mutation p.R150Q 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.593) TCGA-LH-A9QB-06 11 55703324 55703324 G A OR5I1 Missense_Mutation p.P185S 0.64 deleterious(0.03) possibly_damaging(0.857) TCGA-LH-A9QB-06 11 64067027 64067027 G A KCNK4 Silent p.L337L 0.47 TCGA-LH-A9QB-06 11 64940204 64940204 C T SPDYC Missense_Mutation p.P189L 0.55 tolerated(0.15) possibly_damaging(0.715) TCGA-LH-A9QB-06 11 7081260 7081260 C T NLRP14 Silent p.V923V 0.35 TCGA-LH-A9QB-06 11 9749622 9749622 A T SWAP70 Missense_Mutation p.H222L 0.38 deleterious(0.03) probably_damaging(0.965) TCGA-LH-A9QB-06 12 111348807 111348807 G A MYL2 3'UTR 0.76 TCGA-LH-A9QB-06 12 112182594 112182594 G A ACAD10 Nonsense_Mutation p.W652* 0.75 TCGA-LH-A9QB-06 12 117680466 117680466 G A NOS1 Missense_Mutation p.L1037F 0.83 tolerated(0.27) possibly_damaging(0.619) TCGA-LH-A9QB-06 12 119942946 119942946 C T CCDC60 Silent p.L241L 0.89 TCGA-LH-A9QB-06 12 13768476 13768476 C T GRIN2B Missense_Mutation p.G484D 0.79 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 12 50294941 50294941 G A FAIM2 Silent p.L61L 0.78 TCGA-LH-A9QB-06 12 6969655 6969655 G A USP5 Silent p.E448E 0.74 TCGA-LH-A9QB-06 12 7476969 7476969 G A ACSM4 Missense_Mutation p.R470K 0.92 deleterious(0) probably_damaging(0.994) TCGA-LH-A9QB-06 12 8327889 8327889 G A ZNF705A Missense_Mutation p.G69R 0.52 tolerated(0.11) probably_damaging(0.979) TCGA-LH-A9QB-06 13 101707704 101707704 C T NALCN Nonsense_Mutation p.W1720* 0.51 TCGA-LH-A9QB-06 13 114083371 114083371 G A ADPRHL1 Missense_Mutation p.S181L 0.52 deleterious(0) possibly_damaging(0.732) TCGA-LH-A9QB-06 13 21417952 21417952 C A XPO4 Missense_Mutation p.G177V 0.40 deleterious(0) probably_damaging(0.935) TCGA-LH-A9QB-06 13 23909210 23909210 A G SACS Silent p.P2935P 0.30 TCGA-LH-A9QB-06 13 23909211 23909211 G A SACS Missense_Mutation p.P2935L 0.31 benign(0.074) TCGA-LH-A9QB-06 13 29005319 29005319 C T FLT1 Silent p.R314R 0.44 TCGA-LH-A9QB-06 13 36049807 36049807 C T MAB21L1 Missense_Mutation p.E157K 0.37 tolerated(0.06) possibly_damaging(0.895) TCGA-LH-A9QB-06 13 42788733 42788733 C T DGKH Silent p.N1035N 0.49 TCGA-LH-A9QB-06 13 96506627 96506627 G A UGGT2 Missense_Mutation p.R1371C 0.43 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 14 106758049 106758049 G A IGHV2-26 Missense_Mutation p.S15F 0.82 tolerated(0.06) benign(0.335) TCGA-LH-A9QB-06 14 21834637 21834637 T C SUPT16H Missense_Mutation p.Q336R 0.80 tolerated(0.25) benign(0.014) TCGA-LH-A9QB-06 14 22102913 22102913 C T OR10G2 Missense_Mutation p.S29N 0.73 tolerated(0.19) benign(0.017) TCGA-LH-A9QB-06 14 55895632 55895632 G A TBPL2 Silent p.F283F 0.81 TCGA-LH-A9QB-06 14 90651400 90651400 C A KCNK13 3'UTR 0.70 TCGA-LH-A9QB-06 15 22369030 22369030 G A OR4M2 Missense_Mutation p.G152D 0.24 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 15 25415770 25415770 G A SNORD115-3 5'Flank 0.39 TCGA-LH-A9QB-06 15 28456214 28456214 G A HERC2 Missense_Mutation p.H2335Y 0.40 benign(0.412) TCGA-LH-A9QB-06 15 31327822 31327822 T G TRPM1 Missense_Mutation p.D893A 0.37 deleterious(0.02) benign(0.184) TCGA-LH-A9QB-06 15 43896197 43896197 G A STRC Missense_Mutation p.P1458S 0.17 tolerated(0.09) benign(0.011) TCGA-LH-A9QB-06 15 45398502 45398502 C T DUOX2 Missense_Mutation p.E657K 0.26 tolerated(0.22) benign(0.01) TCGA-LH-A9QB-06 15 50303104 50303104 C T ATP8B4 Missense_Mutation p.E125K 0.35 tolerated(0.17) possibly_damaging(0.814) TCGA-LH-A9QB-06 15 64701946 64701946 G C TRIP4 Missense_Mutation p.R321P 0.44 deleterious(0) probably_damaging(0.95) TCGA-LH-A9QB-06 16 11016042 11016042 C T CIITA Silent p.I1056I 0.39 TCGA-LH-A9QB-06 16 11870690 11870690 G A ZC3H7A Missense_Mutation p.R128W 0.34 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 16 2011630 2011630 G A NDUFB10 Silent p.Q134Q 0.46 TCGA-LH-A9QB-06 16 70871723 70871723 C T HYDIN Missense_Mutation p.G4371E 0.73 probably_damaging(0.988) TCGA-LH-A9QB-06 16 77326983 77326983 G A ADAMTS18 Missense_Mutation p.S1060L 0.79 deleterious(0.03) benign(0.311) TCGA-LH-A9QB-06 16 9943693 9943693 G A GRIN2A Silent p.F416F 0.35 TCGA-LH-A9QB-06 17 10204954 10204954 C T MYH13 Missense_Mutation p.E1912K 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-LH-A9QB-06 17 10406126 10406126 G A MYH1 Silent p.L1014L 0.42 TCGA-LH-A9QB-06 17 10406199 10406199 C T MYH1 Silent p.L989L 0.38 TCGA-LH-A9QB-06 17 12667010 12667010 G A MYOCD 3'UTR 0.59 TCGA-LH-A9QB-06 17 1478834 1478834 G A SLC43A2 3'UTR 0.41 TCGA-LH-A9QB-06 17 1478835 1478835 G A SLC43A2 3'UTR 0.41 TCGA-LH-A9QB-06 17 2226955 2226955 A G SRR Missense_Mutation p.T271A 0.35 deleterious(0.04) benign(0.376) TCGA-LH-A9QB-06 17 33690205 33690205 G A SLFN11 Missense_Mutation p.P208S 0.41 tolerated(0.38) benign(0.047) TCGA-LH-A9QB-06 17 40717977 40717977 C T COASY Silent p.A591A 0.46 TCGA-LH-A9QB-06 17 5286496 5286496 T A RABEP1 Missense_Mutation p.I856N 0.40 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-LH-A9QB-06 17 56247207 56247207 G A OR4D2 Missense_Mutation p.R64Q 0.41 tolerated(0.39) benign(0.024) TCGA-LH-A9QB-06 17 58511474 58511474 G A C17orf64 3'Flank 0.38 TCGA-LH-A9QB-06 17 60347004 60347004 G A TBC1D3P2 RNA 0.30 TCGA-LH-A9QB-06 17 62007684 62007684 C T CD79B Silent p.T61T 0.46 TCGA-LH-A9QB-06 17 7417375 7417375 C T POLR2A Missense_Mutation p.S1931L 0.52 possibly_damaging(0.488) TCGA-LH-A9QB-06 17 76219682 76219682 C T BIRC5 3'UTR 0.39 TCGA-LH-A9QB-06 17 76522800 76522800 C A DNAH17 Missense_Mutation p.R1215M 0.50 possibly_damaging(0.779) TCGA-LH-A9QB-06 18 28604339 28604339 C T DSC3 Missense_Mutation p.E251K 0.30 tolerated(0.65) benign(0.094) TCGA-LH-A9QB-06 18 33689570 33689570 G A SLC39A6 Missense_Mutation p.R752C 0.38 deleterious(0.01) possibly_damaging(0.719) TCGA-LH-A9QB-06 18 77133961 77133961 T C ATP9B Missense_Mutation p.I1045T 0.33 deleterious(0) possibly_damaging(0.844) TCGA-LH-A9QB-06 19 14578572 14578572 C T PKN1 Silent p.F623F 0.39 TCGA-LH-A9QB-06 19 15198806 15198806 C T OR1I1 Silent p.V310V 0.48 TCGA-LH-A9QB-06 19 15733103 15733103 G A CYP4F8 Intron 0.39 TCGA-LH-A9QB-06 19 17000990 17000990 C T F2RL3 Missense_Mutation p.S239F 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-LH-A9QB-06 19 21720782 21720782 C T ZNF429 Missense_Mutation p.H643Y 0.44 deleterious(0.02) benign(0.193) TCGA-LH-A9QB-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.35 tolerated(0.44) benign(0.023) TCGA-LH-A9QB-06 19 24309276 24309276 A T ZNF254 Missense_Mutation p.K158N 0.35 deleterious(0.04) benign(0.068) TCGA-LH-A9QB-06 19 37974848 37974848 C T ZNF570 Silent p.S108S 0.36 TCGA-LH-A9QB-06 19 38230133 38230133 C T ZNF573 Missense_Mutation p.G420R 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-LH-A9QB-06 19 42471403 42471403 C T ATP1A3 Missense_Mutation p.G1017E 0.42 deleterious(0.03) possibly_damaging(0.858) TCGA-LH-A9QB-06 19 42492240 42492240 C T ATP1A3 Missense_Mutation p.A82T 0.41 tolerated(0.23) possibly_damaging(0.574) TCGA-LH-A9QB-06 19 42847644 42847644 C T MEGF8 Missense_Mutation p.P510L 0.57 tolerated(0.26) benign(0.001) TCGA-LH-A9QB-06 19 43773566 43773566 G A PSG9 Silent p.A6A 0.60 TCGA-LH-A9QB-06 19 43969709 43969709 C T LYPD3 Silent p.R5R 0.66 TCGA-LH-A9QB-06 19 43969710 43969710 C T LYPD3 Missense_Mutation p.R5K 0.67 tolerated(0.08) benign(0.047) TCGA-LH-A9QB-06 19 44112098 44112098 G A ZNF428 Missense_Mutation p.R80C 0.38 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-LH-A9QB-06 19 45579382 45579382 G A ZNF296 Missense_Mutation p.P84S 0.58 tolerated_low_confidence(0.73) benign(0) TCGA-LH-A9QB-06 19 50510864 50510864 G A VRK3 Missense_Mutation p.S170F 0.41 tolerated(0.12) benign(0.005) TCGA-LH-A9QB-06 19 51986412 51986412 C T CEACAM18 Missense_Mutation p.S333F 0.43 deleterious(0) probably_damaging(0.995) TCGA-LH-A9QB-06 19 54682511 54682511 C G MBOAT7 Missense_Mutation p.K334N 0.50 deleterious(0.02) possibly_damaging(0.88) TCGA-LH-A9QB-06 19 55290091 55290091 C T KIR2DL1 Missense_Mutation p.P231L 0.41 deleterious(0.01) probably_damaging(0.913) TCGA-LH-A9QB-06 19 57335766 57335766 G A PEG3 Silent p.I86I 0.48 TCGA-LH-A9QB-06 1 100588833 100588833 G A SASS6 Missense_Mutation p.R47C 0.33 deleterious(0) probably_damaging(0.995) TCGA-LH-A9QB-06 1 103400077 103400077 C T COL11A1 Silent p.Q1176Q 0.30 TCGA-LH-A9QB-06 1 108185298 108185298 G A VAV3 Silent p.L619L 0.47 TCGA-LH-A9QB-06 1 112319664 112319664 G A KCND3 Missense_Mutation p.P584S 0.46 tolerated_low_confidence(0.42) possibly_damaging(0.641) TCGA-LH-A9QB-06 1 119427598 119427598 G A TBX15 Silent p.F416F 0.47 TCGA-LH-A9QB-06 1 150526425 150526425 G A ADAMTSL4 Missense_Mutation p.G320R 0.55 tolerated(0.58) benign(0.001) TCGA-LH-A9QB-06 1 152127975 152127975 G A RPTN Missense_Mutation p.H534Y 0.61 tolerated(0.11) benign(0.049) TCGA-LH-A9QB-06 1 153912999 153912999 G A DENND4B Silent p.P470P 0.18 TCGA-LH-A9QB-06 1 154561920 154561920 C G ADAR Missense_Mutation p.G896A 0.20 deleterious(0) probably_damaging(0.995) TCGA-LH-A9QB-06 1 155209417 155209417 G A GBA Silent p.F148F 0.65 TCGA-LH-A9QB-06 1 157665384 157665384 G A FCRL3 Silent p.H382H 0.53 TCGA-LH-A9QB-06 1 157811468 157811468 G A CD5L Silent p.I8I 0.50 TCGA-LH-A9QB-06 1 158549273 158549273 G A OR10X1 Silent p.F139F 0.58 TCGA-LH-A9QB-06 1 158725002 158725002 C T OR6K6 Missense_Mutation p.H133Y 0.63 tolerated(0.13) possibly_damaging(0.735) TCGA-LH-A9QB-06 1 160580512 160580512 G A SLAMF1 3'UTR 0.29 TCGA-LH-A9QB-06 1 201016278 201016278 C T CACNA1S Missense_Mutation p.G1545S 0.63 tolerated(0.07) probably_damaging(1) TCGA-LH-A9QB-06 1 202092378 202092378 C T GPR37L1 Missense_Mutation p.P96L 0.68 tolerated(0.31) benign(0.001) TCGA-LH-A9QB-06 1 20220912 20220912 C T OTUD3 Missense_Mutation p.A141V 0.43 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 1 20220913 20220913 C T OTUD3 Silent p.A141A 0.37 TCGA-LH-A9QB-06 1 209907968 209907968 G A HSD11B1 3'UTR 0.67 TCGA-LH-A9QB-06 1 220242724 220242724 A G BPNT1 Splice_Site p.X128_splice 0.31 TCGA-LH-A9QB-06 1 22172639 22172639 G A HSPG2 Missense_Mutation p.T2809I 0.41 possibly_damaging(0.744) TCGA-LH-A9QB-06 1 223286378 223286378 C T TLR5 Splice_Site 0.64 TCGA-LH-A9QB-06 1 228524704 228524704 G A OBSCN Splice_Site p.X6470_splice 0.67 TCGA-LH-A9QB-06 1 230415074 230415074 C T GALNT2 Missense_Mutation p.S529F 0.57 deleterious(0.05) possibly_damaging(0.736) TCGA-LH-A9QB-06 1 237754186 237754186 G T RYR2 Missense_Mutation p.G1352C 0.66 benign(0.319) TCGA-LH-A9QB-06 1 240071997 240071997 G A CHRM3 Missense_Mutation p.D416N 0.30 tolerated(0.68) benign(0.067) TCGA-LH-A9QB-06 1 247694992 247694992 G A OR2C3 Silent p.F274F 0.30 TCGA-LH-A9QB-06 1 248005013 248005013 G A OR11L1 Silent p.F62F 0.59 TCGA-LH-A9QB-06 1 248202386 248202386 C T OR2L2 Silent p.L273L 0.65 TCGA-LH-A9QB-06 1 27721249 27721249 C T GPR3 Missense_Mutation p.S316F 0.40 tolerated(1) benign(0.013) TCGA-LH-A9QB-06 1 28208528 28208528 G T THEMIS2 Silent p.V231V 0.33 TCGA-LH-A9QB-06 1 32849466 32849466 G A BSDC1 Missense_Mutation p.P125S 0.43 deleterious(0.01) benign(0.373) TCGA-LH-A9QB-06 1 34037163 34037163 C T CSMD2 Nonsense_Mutation p.W2644* 0.56 TCGA-LH-A9QB-06 1 40131857 40131857 G A NT5C1A Missense_Mutation p.R63C 0.41 deleterious(0) possibly_damaging(0.586) TCGA-LH-A9QB-06 1 44035397 44035397 C T PTPRF Silent p.F172F 0.55 TCGA-LH-A9QB-06 1 45960756 45960756 G A CCDC163P 3'Flank 0.45 TCGA-LH-A9QB-06 1 52825903 52825903 G A CC2D1B Silent p.T202T 0.47 TCGA-LH-A9QB-06 1 60366662 60366662 C A CYP2J2 Missense_Mutation p.R435S 0.30 deleterious(0) benign(0.411) TCGA-LH-A9QB-06 1 60366663 60366663 C T CYP2J2 Missense_Mutation p.R435K 0.27 tolerated(0.14) benign(0.03) TCGA-LH-A9QB-06 1 62920960 62920960 C G DOCK7 3'UTR 0.33 TCGA-LH-A9QB-06 1 92456782 92456782 C T BRDT Missense_Mutation p.P682S 0.45 tolerated(0.16) benign(0.001) TCGA-LH-A9QB-06 20 43036084 43036084 G A HNF4A Silent p.K118K 0.27 TCGA-LH-A9QB-06 20 43355958 43355958 G T WISP2 3'UTR 0.54 TCGA-LH-A9QB-06 20 50140054 50140054 G A NFATC2 Silent p.A242A 0.37 TCGA-LH-A9QB-06 20 55027044 55027044 C T CASS4 Missense_Mutation p.A271V 0.70 tolerated(0.3) benign(0.009) TCGA-LH-A9QB-06 20 745894 745894 G A SLC52A3 Silent p.S175S 0.35 TCGA-LH-A9QB-06 21 31015249 31015249 G T GRIK1 Missense_Mutation p.A332D 0.50 deleterious(0) probably_damaging(0.939) TCGA-LH-A9QB-06 21 34925639 34925639 C T SON Silent p.L1368L 0.40 TCGA-LH-A9QB-06 21 38862691 38862691 C T DYRK1A Silent p.I293I 0.49 TCGA-LH-A9QB-06 21 39580328 39580328 C T DSCR10 RNA 0.43 TCGA-LH-A9QB-06 21 42804095 42804095 C T MX1 Missense_Mutation p.P33L 0.38 tolerated_low_confidence(0.31) benign(0.001) TCGA-LH-A9QB-06 21 45092197 45092197 C T RRP1B Silent p.L74L 0.47 TCGA-LH-A9QB-06 21 46596300 46596300 C T ADARB1 Silent p.F228F 0.57 TCGA-LH-A9QB-06 21 47629511 47629511 G A LSS Missense_Mutation p.S408L 0.36 tolerated(0.12) benign(0.001) TCGA-LH-A9QB-06 22 23235890 23235890 C T IGLL5 Nonsense_Mutation p.Q73* 0.42 TCGA-LH-A9QB-06 22 27026439 27026439 G A CRYBA4 Silent p.R193R 0.40 TCGA-LH-A9QB-06 22 37098422 37098422 C A CACNG2 Missense_Mutation p.C67F 0.46 deleterious(0) possibly_damaging(0.801) TCGA-LH-A9QB-06 22 41527497 41527497 C T EP300 Missense_Mutation p.S463F 0.45 unknown(0) TCGA-LH-A9QB-06 22 45944497 45944497 C T FBLN1 Silent p.I482I 0.37 TCGA-LH-A9QB-06 22 46611203 46611203 C G PPARA Nonsense_Mutation p.Y114* 0.33 TCGA-LH-A9QB-06 22 50599232 50599232 G A MOV10L1 Missense_Mutation p.G1147E 0.52 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 22 50945430 50945430 C T LMF2 Silent p.R43R 0.47 TCGA-LH-A9QB-06 2 107021620 107021620 G A RGPD3 3'UTR 0.48 TCGA-LH-A9QB-06 2 138208523 138208523 G A THSD7B Missense_Mutation p.R1023Q 0.33 deleterious(0) unknown(0) TCGA-LH-A9QB-06 2 159481710 159481710 C T PKP4 Silent p.T308T 0.33 TCGA-LH-A9QB-06 2 160006957 160006957 C T TANC1 Missense_Mutation p.P191L 0.41 deleterious(0.01) possibly_damaging(0.755) TCGA-LH-A9QB-06 2 1639270 1639270 G T PXDN Silent p.L1410L 0.36 TCGA-LH-A9QB-06 2 170598038 170598038 C T KLHL23 Missense_Mutation p.P453S 0.27 deleterious(0.03) probably_damaging(1) TCGA-LH-A9QB-06 2 175618126 175618126 G A CHRNA1 Intron 0.43 TCGA-LH-A9QB-06 2 179444752 179444752 C T TTN Missense_Mutation p.G22421E 0.38 TCGA-LH-A9QB-06 2 179638266 179638266 C T TTN Missense_Mutation p.R2506Q 0.39 TCGA-LH-A9QB-06 2 189876393 189876393 C T COL3A1 Nonsense_Mutation p.R1432* 0.47 TCGA-LH-A9QB-06 2 1926171 1926171 C T MYT1L Missense_Mutation p.G457E 0.37 deleterious(0.04) benign(0.237) TCGA-LH-A9QB-06 2 1926172 1926172 C T MYT1L Missense_Mutation p.G457R 0.38 deleterious(0.03) possibly_damaging(0.786) TCGA-LH-A9QB-06 2 20886827 20886827 G A C2orf43 Missense_Mutation p.P272S 0.50 tolerated(0.68) benign(0.006) TCGA-LH-A9QB-06 2 219209659 219209659 C T PNKD Silent p.L371L 0.53 TCGA-LH-A9QB-06 2 220333676 220333676 C T SPEG Missense_Mutation p.L1133F 0.44 benign(0.145) TCGA-LH-A9QB-06 2 234652078 234652078 G A UGT1A10 Intron 0.70 TCGA-LH-A9QB-06 2 238449447 238449447 G T MLPH Silent p.V431V 0.30 TCGA-LH-A9QB-06 2 241808385 241808385 C T AGXT Missense_Mutation p.P35S 0.37 deleterious(0.03) benign(0.148) TCGA-LH-A9QB-06 2 27466304 27466304 C T CAD Missense_Mutation p.P2199L 0.47 deleterious(0.02) probably_damaging(0.993) TCGA-LH-A9QB-06 2 44078793 44078793 G A ABCG8 Silent p.Q131Q 0.41 TCGA-LH-A9QB-06 2 47202143 47202143 C T TTC7A Silent p.I183I 0.41 TCGA-LH-A9QB-06 2 69053129 69053129 G A ARHGAP25 Missense_Mutation p.E582K 0.47 tolerated(0.13) possibly_damaging(0.721) TCGA-LH-A9QB-06 2 85280408 85280408 G - KCMF1 Frame_Shift_Del p.E343Rfs*11 0.34 TCGA-LH-A9QB-06 2 96941043 96941043 G A SNRNP200 Silent p.S2073S 0.42 TCGA-LH-A9QB-06 3 111799811 111799811 G A TMPRSS7 Nonsense_Mutation p.W678* 0.37 TCGA-LH-A9QB-06 3 120389274 120389274 C T HGD Silent p.Q94Q 0.45 TCGA-LH-A9QB-06 3 122003814 122003814 G A CASR Missense_Mutation p.D1015N 0.50 deleterious_low_confidence(0) benign(0.098) TCGA-LH-A9QB-06 3 142204079 142204079 G A ATR Missense_Mutation p.L2042F 0.39 deleterious(0) probably_damaging(0.985) TCGA-LH-A9QB-06 3 142204080 142204080 G A ATR Silent p.Y2041Y 0.39 TCGA-LH-A9QB-06 3 155203357 155203357 C T PLCH1 Missense_Mutation p.R929K 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-LH-A9QB-06 3 159606673 159606673 G A IQCJ-SCHIP1 Missense_Mutation p.R496K 0.49 tolerated(0.11) probably_damaging(0.97) TCGA-LH-A9QB-06 3 167159835 167159835 G A SERPINI2 3'UTR 0.33 TCGA-LH-A9QB-06 3 168819888 168819888 C T MECOM Missense_Mutation p.E788K 0.42 tolerated(0.06) benign(0.393) TCGA-LH-A9QB-06 3 194117567 194117567 G A GP5 Missense_Mutation p.P482L 0.36 deleterious(0.04) benign(0.157) TCGA-LH-A9QB-06 3 196612776 196612776 C T SENP5 Missense_Mutation p.R242W 0.28 deleterious(0.03) possibly_damaging(0.808) TCGA-LH-A9QB-06 3 36873559 36873559 G A TRANK1 Silent p.S2461S 0.49 TCGA-LH-A9QB-06 3 38739877 38739877 G A SCN10A Silent p.L1612L 0.48 TCGA-LH-A9QB-06 3 46008722 46008722 G A FYCO1 Silent p.L702L 0.39 TCGA-LH-A9QB-06 3 47040521 47040521 C T NBEAL2 Silent p.L1153L 0.36 TCGA-LH-A9QB-06 3 48459389 48459389 A C PLXNB1 Missense_Mutation p.V1102G 0.41 deleterious(0) possibly_damaging(0.887) TCGA-LH-A9QB-06 3 50681930 50681930 C T MAPKAPK3 Silent p.L199L 0.31 TCGA-LH-A9QB-06 3 51297598 51297598 C T DOCK3 Silent p.Y732Y 0.30 TCGA-LH-A9QB-06 3 52860001 52860001 G A ITIH4 Silent p.S220S 0.32 TCGA-LH-A9QB-06 3 52864498 52864498 G A ITIH4 Intron 0.53 TCGA-LH-A9QB-06 3 56026144 56026144 G A ERC2 Silent p.I732I 0.44 TCGA-LH-A9QB-06 3 58090900 58090900 G T FLNB Silent p.A568A 0.49 TCGA-LH-A9QB-06 3 65367644 65367644 C T MAGI1 Missense_Mutation p.G870E 0.43 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 3 7620949 7620949 G A GRM7 Missense_Mutation p.E786K 0.47 deleterious(0) possibly_damaging(0.85) TCGA-LH-A9QB-06 3 77671490 77671490 G A ROBO2 Missense_Mutation p.D1239N 0.37 tolerated(0.24) possibly_damaging(0.555) TCGA-LH-A9QB-06 4 100125346 100125346 C T ADH6 3'UTR 0.27 TCGA-LH-A9QB-06 4 126398401 126398401 G A FAT4 Missense_Mutation p.D4129N 0.48 probably_damaging(0.998) TCGA-LH-A9QB-06 4 151827114 151827117 ACTG - LRBA Frame_Shift_Del p.A543Dfs*12 0.49 TCGA-LH-A9QB-06 4 153896338 153896338 C T FHDC1 Missense_Mutation p.S632F 0.41 tolerated(0.28) benign(0.146) TCGA-LH-A9QB-06 4 165962177 165962177 G A TRIM60 Missense_Mutation p.R318Q 0.46 tolerated(0.53) benign(0.019) TCGA-LH-A9QB-06 4 169432867 169432867 C T PALLD Missense_Mutation p.S71F 0.57 deleterious(0.01) possibly_damaging(0.653) TCGA-LH-A9QB-06 4 175898711 175898711 C T ADAM29 Silent p.L679L 0.52 TCGA-LH-A9QB-06 4 265585 265585 C T ZNF732 Missense_Mutation p.R354K 0.41 tolerated(0.31) benign(0.004) TCGA-LH-A9QB-06 4 40337851 40337851 G A CHRNA9 Silent p.E24E 0.39 TCGA-LH-A9QB-06 4 41015788 41015788 G A APBB2 Missense_Mutation p.S216F 0.45 tolerated(0.06) benign(0.001) TCGA-LH-A9QB-06 4 619652 619652 C T PDE6B Silent p.V79V 0.64 TCGA-LH-A9QB-06 4 74351700 74351700 C T AFM Missense_Mutation p.S131F 0.44 deleterious(0) benign(0.295) TCGA-LH-A9QB-06 4 7435455 7435455 G A PSAPL1 Silent p.S384S 0.38 TCGA-LH-A9QB-06 4 77100724 77100724 G A SCARB2 Silent p.S186S 0.51 TCGA-LH-A9QB-06 4 82126070 82126070 G A PRKG2 Silent p.I44I 0.47 TCGA-LH-A9QB-06 4 90170438 90170438 G A GPRIN3 Missense_Mutation p.S275L 0.42 tolerated(0.07) benign(0.034) TCGA-LH-A9QB-06 4 951688 951688 G A TMEM175 Missense_Mutation p.G307R 0.54 deleterious(0.05) possibly_damaging(0.537) TCGA-LH-A9QB-06 4 951689 951689 G A TMEM175 Missense_Mutation p.G307E 0.56 deleterious(0.01) probably_damaging(0.978) TCGA-LH-A9QB-06 5 108704271 108704271 A G PJA2 Missense_Mutation p.L487P 0.39 deleterious(0) probably_damaging(0.949) TCGA-LH-A9QB-06 5 108704272 108704272 G A PJA2 Missense_Mutation p.L487F 0.39 tolerated(1) benign(0.038) TCGA-LH-A9QB-06 5 110461423 110461423 T G WDR36 Missense_Mutation p.M879R 0.41 deleterious(0.01) possibly_damaging(0.905) TCGA-LH-A9QB-06 5 110843139 110843139 C T STARD4 Intron 0.52 TCGA-LH-A9QB-06 5 118264240 118264240 G A DTWD2 Missense_Mutation p.P197S 0.37 deleterious(0.04) probably_damaging(0.99) TCGA-LH-A9QB-06 5 125912831 125912831 G A ALDH7A1 Missense_Mutation p.P197L 0.54 deleterious(0) probably_damaging(0.99) TCGA-LH-A9QB-06 5 13793685 13793685 C T DNAH5 Silent p.K2721K 0.40 TCGA-LH-A9QB-06 5 140476702 140476702 C T PCDHB2 Silent p.F776F 0.41 TCGA-LH-A9QB-06 5 140595799 140595799 C T PCDHB13 Missense_Mutation p.L702F 0.46 deleterious_low_confidence(0.01) benign(0.441) TCGA-LH-A9QB-06 5 140616380 140616380 G A PCDHB18 RNA 0.39 TCGA-LH-A9QB-06 5 141353267 141353267 C T RNF14 Silent p.I38I 0.39 TCGA-LH-A9QB-06 5 161117321 161117321 G A GABRA6 Nonsense_Mutation p.W263* 0.42 TCGA-LH-A9QB-06 5 172447271 172447271 C T ATP6V0E1 Silent p.N61N 0.31 TCGA-LH-A9QB-06 5 177310974 177310974 C T RP11-423H2.1 RNA 0.29 TCGA-LH-A9QB-06 5 26890627 26890627 G A CDH9 Missense_Mutation p.H434Y 0.44 tolerated(0.07) benign(0.003) TCGA-LH-A9QB-06 5 31323080 31323080 C T CDH6 Missense_Mutation p.P680S 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-LH-A9QB-06 5 31526614 31526614 G A DROSHA Silent p.F142F 0.39 TCGA-LH-A9QB-06 5 34925575 34925575 G A BRIX1 Missense_Mutation p.R346K 0.47 tolerated_low_confidence(1) benign(0) TCGA-LH-A9QB-06 5 35014170 35014170 C T AGXT2 Missense_Mutation p.D340N 0.48 tolerated(0.09) benign(0.167) TCGA-LH-A9QB-06 5 37165656 37165656 G A C5orf42 Silent p.I2506I 0.44 TCGA-LH-A9QB-06 5 41005004 41005004 G A MROH2B Missense_Mutation p.L1295F 0.50 deleterious(0.01) benign(0.424) TCGA-LH-A9QB-06 5 453527 453527 G A EXOC3 Missense_Mutation p.G136E 0.57 deleterious(0) probably_damaging(0.994) TCGA-LH-A9QB-06 5 54563056 54563056 C T DHX29 Nonsense_Mutation p.W1145* 0.29 TCGA-LH-A9QB-06 5 64756081 64756081 C T ADAMTS6 Missense_Mutation p.E183K 0.42 tolerated(0.06) benign(0.018) TCGA-LH-A9QB-06 5 72427574 72427574 C T TMEM171 3'UTR 0.44 TCGA-LH-A9QB-06 5 79027320 79027320 C T CMYA5 Missense_Mutation p.P911L 0.40 benign(0.043) TCGA-LH-A9QB-06 5 87498808 87498808 G A TMEM161B Silent p.N295N 0.35 TCGA-LH-A9QB-06 6 107003708 107003708 C T AIM1 Missense_Mutation p.P1476L 0.84 deleterious(0.03) probably_damaging(1) TCGA-LH-A9QB-06 6 11185313 11185313 G A NEDD9 3'UTR 0.44 TCGA-LH-A9QB-06 6 146351350 146351350 G A GRM1 Missense_Mutation p.E233K 0.92 deleterious(0.01) possibly_damaging(0.491) TCGA-LH-A9QB-06 6 25916041 25916041 C T SLC17A2 Missense_Mutation p.G329E 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-LH-A9QB-06 6 26033341 26033341 C A HIST1H2AB 3'UTR 0.34 TCGA-LH-A9QB-06 6 27925184 27925184 C T OR2B6 Missense_Mutation p.H56Y 0.57 deleterious(0.01) possibly_damaging(0.811) TCGA-LH-A9QB-06 6 29141830 29141830 C T OR2J2 Missense_Mutation p.R140C 0.35 deleterious(0.04) benign(0.031) TCGA-LH-A9QB-06 6 30892195 30892195 C T VARS2 Missense_Mutation p.S874F 0.27 tolerated(0.46) benign(0.008) TCGA-LH-A9QB-06 6 31612918 31612918 G A BAG6 Missense_Mutation p.P398S 0.25 tolerated(0.11) benign(0.002) TCGA-LH-A9QB-06 6 32036668 32036668 A G TNXB Missense_Mutation p.Y1945H 0.33 probably_damaging(0.996) TCGA-LH-A9QB-06 6 43406416 43406416 C T ABCC10 Silent p.T670T 0.37 TCGA-LH-A9QB-06 6 43471036 43471036 C T TJAP1 Intron 0.27 TCGA-LH-A9QB-06 6 44107307 44107307 G A TMEM63B Missense_Mutation p.G171S 0.72 tolerated(0.17) possibly_damaging(0.513) TCGA-LH-A9QB-06 6 46133133 46133133 C A ENPP5 Missense_Mutation p.D333Y 0.60 tolerated(0.05) benign(0.369) TCGA-LH-A9QB-06 6 46214644 46214644 C T RCAN2 Missense_Mutation p.E138K 0.35 tolerated(0.82) benign(0.167) TCGA-LH-A9QB-06 6 49754491 49754491 C T PGK2 Missense_Mutation p.G137E 0.26 deleterious(0) possibly_damaging(0.86) TCGA-LH-A9QB-06 6 52141987 52141987 G A MCM3 Missense_Mutation p.S393F 0.38 deleterious(0) probably_damaging(0.993) TCGA-LH-A9QB-06 6 52303125 52303125 C T EFHC1 Silent p.F103F 0.23 TCGA-LH-A9QB-06 6 53140000 53140000 G A ELOVL5 Silent p.F155F 0.24 TCGA-LH-A9QB-06 6 7231652 7231652 C T RREB1 Missense_Mutation p.S1107F 0.35 deleterious(0.04) benign(0.301) TCGA-LH-A9QB-06 6 87967702 87967702 C A ZNF292 Nonsense_Mutation p.S1452* 0.88 TCGA-LH-A9QB-06 7 102953504 102953504 G A DNAJC2 Missense_Mutation p.L561F 0.68 deleterious(0) probably_damaging(0.996) TCGA-LH-A9QB-06 7 107848081 107848081 G A NRCAM Silent p.A366A 0.34 TCGA-LH-A9QB-06 7 116339611 116339611 T C MET Missense_Mutation p.V158A 0.65 deleterious(0.04) possibly_damaging(0.575) TCGA-LH-A9QB-06 7 121944240 121944240 C T FEZF1 Silent p.T84T 0.28 TCGA-LH-A9QB-06 7 139706953 139706953 G A TBXAS1 Silent p.E446E 0.91 TCGA-LH-A9QB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.87 deleterious(0) probably_damaging(0.967) TCGA-LH-A9QB-06 7 142000791 142000791 G A TRBV2 5'UTR 0.91 TCGA-LH-A9QB-06 7 21912956 21912956 G A DNAH11 Missense_Mutation p.G4018E 0.38 benign(0.018) TCGA-LH-A9QB-06 7 35280596 35280596 C T TBX20 Silent p.K236K 0.32 TCGA-LH-A9QB-06 7 37382326 37382326 G A ELMO1 5'UTR 0.50 TCGA-LH-A9QB-06 7 44190658 44190658 G A GCK Missense_Mutation p.S128F 0.34 deleterious(0) possibly_damaging(0.886) TCGA-LH-A9QB-06 7 72281140 72281140 G A TYW1B Nonsense_Mutation p.R117* 0.59 TCGA-LH-A9QB-06 8 110535015 110535015 C T PKHD1L1 Missense_Mutation p.H4076Y 0.40 tolerated(1) benign(0.001) TCGA-LH-A9QB-06 8 134145835 134145835 C T TG Nonsense_Mutation p.R2707* 0.62 TCGA-LH-A9QB-06 8 139628297 139628297 C T COL22A1 Missense_Mutation p.G1291R 0.47 unknown(0) TCGA-LH-A9QB-06 8 25364913 25364913 C T CDCA2 Missense_Mutation p.P911S 0.47 deleterious(0.01) probably_damaging(0.941) TCGA-LH-A9QB-06 8 27289790 27289790 C T PTK2B Missense_Mutation p.A300V 0.56 deleterious(0.01) possibly_damaging(0.456) TCGA-LH-A9QB-06 8 2806886 2806886 C T CSMD1 Missense_Mutation p.G3446E 0.40 benign(0.014) TCGA-LH-A9QB-06 8 28573684 28573684 C T EXTL3 Silent p.L36L 0.47 TCGA-LH-A9QB-06 8 3443701 3443701 T A CSMD1 Silent p.T393T 0.58 TCGA-LH-A9QB-06 8 48801778 48801778 C T PRKDC Silent p.L1358L 0.55 TCGA-LH-A9QB-06 8 77763775 77763775 C T ZFHX4 Missense_Mutation p.P1540S 0.50 possibly_damaging(0.803) TCGA-LH-A9QB-06 8 95183126 95183126 C T CDH17 Missense_Mutation p.D291N 0.41 tolerated(0.62) benign(0.02) TCGA-LH-A9QB-06 8 96264426 96264426 G A C8orf37 Silent p.L154L 0.39 TCGA-LH-A9QB-06 9 107361104 107361104 G A OR13C5 Silent p.F197F 0.49 TCGA-LH-A9QB-06 9 111624704 111624704 G A ACTL7A Silent p.R34R 0.38 TCGA-LH-A9QB-06 9 119770467 119770467 G A ASTN2 Silent p.L448L 0.31 TCGA-LH-A9QB-06 9 125377826 125377826 G A OR1Q1 Silent p.K270K 0.41 TCGA-LH-A9QB-06 9 130677040 130677040 G A ST6GALNAC4 Silent p.P31P 0.46 TCGA-LH-A9QB-06 9 131084791 131084791 G A TRUB2 5'UTR 0.21 TCGA-LH-A9QB-06 9 134022966 134022966 C T NUP214 Missense_Mutation p.P679S 0.47 benign(0.016) TCGA-LH-A9QB-06 9 140006473 140006473 G A DPP7 Silent p.T353T 0.46 TCGA-LH-A9QB-06 9 73233864 73233864 G A TRPM3 Silent p.F747F 0.69 TCGA-LH-A9QB-06 9 73233956 73233956 G A TRPM3 Nonsense_Mutation p.Q717* 0.64 TCGA-LH-A9QB-06 9 97380116 97380116 G A FBP1 Silent p.P120P 0.82 TCGA-LH-A9QB-06 X 101382265 101382265 G A TCEAL2 Missense_Mutation p.E155K 0.50 deleterious(0.04) possibly_damaging(0.621) TCGA-LH-A9QB-06 X 102317795 102317795 C T BEX1 3'UTR 0.39 TCGA-LH-A9QB-06 X 105132287 105132287 G A NRK Missense_Mutation p.D85N 0.50 deleterious(0) benign(0.235) TCGA-LH-A9QB-06 X 107414691 107414691 C T COL4A6 Missense_Mutation p.G1069E 0.36 probably_damaging(1) TCGA-LH-A9QB-06 X 107979044 107979044 G A IRS4 Silent p.F177F 0.49 TCGA-LH-A9QB-06 X 109694131 109694131 G A RGAG1 Missense_Mutation p.D96N 0.44 tolerated(0.08) benign(0.27) TCGA-LH-A9QB-06 X 119005526 119005526 G A RNF113A Silent p.F17F 0.42 TCGA-LH-A9QB-06 X 129263409 129263409 C T AIFM1 3'UTR 0.71 TCGA-LH-A9QB-06 X 129272623 129272623 C T AIFM1 Silent p.T304T 0.32 TCGA-LH-A9QB-06 X 135322636 135322636 C T MAP7D3 Missense_Mutation p.R182Q 0.32 tolerated(0.41) benign(0.044) TCGA-LH-A9QB-06 X 135430931 135430931 C T GPR112 Missense_Mutation p.S1689F 0.45 tolerated(0.05) benign(0.177) TCGA-LH-A9QB-06 X 138644324 138644324 A C F9 3'UTR 0.40 TCGA-LH-A9QB-06 X 150832799 150832799 G A PASD1 Silent p.G350G 0.46 TCGA-LH-A9QB-06 X 151909178 151909178 G A CSAG1 Silent p.K69K 0.43 TCGA-LH-A9QB-06 X 154194351 154194351 C T F8 Missense_Mutation p.R446Q 0.40 tolerated(0.08) benign(0.187) TCGA-LH-A9QB-06 X 154293973 154293973 G A MTCP1 Missense_Mutation p.P66L 0.44 deleterious(0.03) probably_damaging(1) TCGA-LH-A9QB-06 X 15527528 15527528 C T BMX Missense_Mutation p.T72M 0.30 deleterious(0.04) probably_damaging(0.956) TCGA-LH-A9QB-06 X 17121882 17121882 C T REPS2 Missense_Mutation p.P520S 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-LH-A9QB-06 X 1720320 1720320 C T AKAP17A Missense_Mutation p.P641S 0.50 deleterious_low_confidence(0.05) unknown(0) TCGA-LH-A9QB-06 X 22291755 22291755 C T ZNF645 Missense_Mutation p.S216F 0.45 deleterious(0.02) possibly_damaging(0.635) TCGA-LH-A9QB-06 X 34961804 34961804 G A FAM47B Missense_Mutation p.E286K 0.52 tolerated(0.17) benign(0.058) TCGA-LH-A9QB-06 X 35938165 35938165 G T CXorf22 Missense_Mutation p.Q83H 0.43 deleterious(0) probably_damaging(1) TCGA-LH-A9QB-06 X 36083856 36083856 G A CHDC2 Silent p.K13K 0.37 TCGA-LH-A9QB-06 X 37663274 37663274 G A CYBB Missense_Mutation p.E348K 0.35 deleterious(0) probably_damaging(0.99) TCGA-LH-A9QB-06 X 41782280 41782280 G A CASK 5'Flank 0.55 TCGA-LH-A9QB-06 X 47483614 47483614 G A CFP 3'UTR 0.42 TCGA-LH-A9QB-06 X 51638338 51638338 A G MAGED1 Missense_Mutation p.K135E 0.56 deleterious_low_confidence(0) unknown(0) TCGA-LH-A9QB-06 X 53458992 53458992 C T HSD17B10 Missense_Mutation p.G144R 0.48 tolerated(0.08) benign(0.065) TCGA-LH-A9QB-06 X 54472518 54472518 G A FGD1 3'UTR 0.39 TCGA-LH-A9QB-06 X 69282951 69282951 G A OTUD6A Missense_Mutation p.E193K 0.38 tolerated(0.2) benign(0.022) TCGA-LH-A9QB-06 X 69457069 69457069 C T AWAT1 Missense_Mutation p.P144L 0.29 deleterious(0.03) benign(0.137) TCGA-LH-A9QB-06 X 69457070 69457070 C T AWAT1 Silent p.P144P 0.29 TCGA-LH-A9QB-06 X 70321118 70321118 C T FOXO4 Silent p.F346F 0.54 TCGA-LH-A9QB-06 X 7177491 7177491 C T STS Silent p.L167L 0.39 TCGA-LH-A9QB-06 X 71840650 71840650 G A PHKA1 Missense_Mutation p.R688W 0.25 deleterious(0.01) possibly_damaging(0.579) TCGA-LH-A9QB-06 X 7811241 7811241 G A VCX 5'UTR 0.20 TCGA-LH-A9QB-06 X 9862617 9862617 C A SHROOM2 Silent p.T223T 0.45 TCGA-OD-A75X-06 10 100013540 100013540 C T LOXL4 Silent p.L535L 0.79 TCGA-OD-A75X-06 10 100374730 100374730 G A HPSE2 Silent p.V417V 0.84 TCGA-OD-A75X-06 10 106899245 106899245 G A SORCS3 Splice_Site p.X434_splice 0.94 TCGA-OD-A75X-06 10 107012560 107012560 C T SORCS3 Missense_Mutation p.L1045F 0.80 deleterious(0.01) probably_damaging(0.98) TCGA-OD-A75X-06 10 114186994 114186994 C T ACSL5 Missense_Mutation p.H700Y 0.80 tolerated(0.07) benign(0.149) TCGA-OD-A75X-06 10 117486768 117486768 G A ATRNL1 Missense_Mutation p.R1269Q 0.81 tolerated(0.19) probably_damaging(0.992) TCGA-OD-A75X-06 10 124402732 124402732 C T DMBT1 Missense_Mutation p.P2354S 0.85 tolerated(0.08) probably_damaging(0.998) TCGA-OD-A75X-06 10 124600703 124600703 G A CUZD1 Missense_Mutation p.S75F 0.72 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 10 17750894 17750894 C T STAM Silent p.V443V 0.86 TCGA-OD-A75X-06 10 21178791 21178791 C T NEBL Missense_Mutation p.G81S 0.85 tolerated(1) benign(0.008) TCGA-OD-A75X-06 10 24835074 24835074 G A KIAA1217 Missense_Mutation p.G1885S 0.78 deleterious(0.03) probably_damaging(1) TCGA-OD-A75X-06 10 24835075 24835075 G A KIAA1217 Missense_Mutation p.G1885D 0.78 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 10 25701294 25701294 C T GPR158 Silent p.F409F 0.05 TCGA-OD-A75X-06 10 25886754 25886754 G A GPR158 Missense_Mutation p.M733I 0.77 deleterious(0) probably_damaging(0.937) TCGA-OD-A75X-06 10 28030399 28030399 G A MKX Missense_Mutation p.R75W 0.80 deleterious(0) possibly_damaging(0.895) TCGA-OD-A75X-06 10 28276434 28276434 C T ARMC4 Missense_Mutation p.G88E 0.13 tolerated(0.07) benign(0.244) TCGA-OD-A75X-06 10 29779929 29779929 C T SVIL Missense_Mutation p.E1347K 0.26 deleterious(0) possibly_damaging(0.89) TCGA-OD-A75X-06 10 30316594 30316594 G A KIAA1462 Missense_Mutation p.P828L 0.04 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 10 34620245 34620245 G A PARD3 Missense_Mutation p.S881F 0.81 deleterious(0.02) probably_damaging(0.973) TCGA-OD-A75X-06 10 45941061 45941061 G A ALOX5 Missense_Mutation p.E651K 0.82 tolerated(0.3) benign(0.001) TCGA-OD-A75X-06 10 47087350 47087350 C T NPY4R Silent p.S189S 0.45 TCGA-OD-A75X-06 10 48389734 48389734 C T RBP3 Missense_Mutation p.D382N 0.73 deleterious(0) probably_damaging(0.968) TCGA-OD-A75X-06 10 50121703 50121703 G A LRRC18 Silent p.L166L 0.87 TCGA-OD-A75X-06 10 50574190 50574190 C T DRGX Missense_Mutation p.E260K 0.74 deleterious_low_confidence(0.01) benign(0.016) TCGA-OD-A75X-06 10 52569741 52569741 C T A1CF Missense_Mutation p.E516K 0.81 deleterious(0.01) possibly_damaging(0.78) TCGA-OD-A75X-06 10 60461843 60461843 G A BICC1 Missense_Mutation p.E83K 0.52 deleterious(0.01) benign(0.052) TCGA-OD-A75X-06 10 62553692 62553692 C T CDK1 Missense_Mutation p.P285S 0.74 tolerated(0.1) benign(0.017) TCGA-OD-A75X-06 10 6527122 6527122 C T PRKCQ Missense_Mutation p.G337E 0.75 tolerated(0.08) benign(0.006) TCGA-OD-A75X-06 10 67679977 67679977 G A CTNNA3 3'UTR 0.85 TCGA-OD-A75X-06 10 71835472 71835472 G A H2AFY2 Missense_Mutation p.G20S 0.79 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 10 71835473 71835473 G A H2AFY2 Missense_Mutation p.G20D 0.79 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 10 75576875 75576875 C T CAMK2G Silent p.T448T 0.76 TCGA-OD-A75X-06 10 7608228 7608228 G A ITIH5 Silent p.I764I 0.80 TCGA-OD-A75X-06 10 7769757 7769757 G A ITIH2 Silent p.L415L 0.84 TCGA-OD-A75X-06 10 7801817 7801817 A C KIN Intron 0.81 TCGA-OD-A75X-06 10 79793584 79793584 C T RPS24 5'UTR 0.73 TCGA-OD-A75X-06 10 83635777 83635777 G A NRG3 Silent p.A227A 0.43 TCGA-OD-A75X-06 10 89720671 89720671 G A PTEN Nonsense_Mutation p.W274* 0.83 TCGA-OD-A75X-06 10 90588368 90588368 T A ANKRD22 Missense_Mutation p.Y90F 0.83 tolerated(0.09) probably_damaging(0.999) TCGA-OD-A75X-06 10 92509303 92509303 C T HTR7 Silent p.G196G 0.75 TCGA-OD-A75X-06 10 95518009 95518009 A G LGI1 Silent p.K36K 0.91 TCGA-OD-A75X-06 10 96025626 96025626 C T PLCE1 Missense_Mutation p.L1398F 0.73 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 10 96796894 96796894 G A CYP2C8 Silent p.I488I 0.84 TCGA-OD-A75X-06 10 96827158 96827158 G A CYP2C8 Intron 0.76 TCGA-OD-A75X-06 10 99130479 99130479 G A RRP12 Silent p.I859I 0.78 TCGA-OD-A75X-06 11 100126624 100126624 C T CNTN5 Missense_Mutation p.S713F 0.38 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 11 100170018 100170018 G A CNTN5 Missense_Mutation p.R837Q 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-OD-A75X-06 11 101818765 101818765 C G KIAA1377 Missense_Mutation p.S133C 0.44 tolerated(0.06) benign(0.434) TCGA-OD-A75X-06 11 10328106 10328111 CGGGTC GTT ADM In_Frame_Del p.P159_R161delinsRW 0.45 TCGA-OD-A75X-06 11 107686522 107686522 G A SLC35F2 Nonsense_Mutation p.R94* 0.42 TCGA-OD-A75X-06 11 108214074 108214074 C T ATM Silent p.A2798A 0.43 TCGA-OD-A75X-06 11 111407520 111407520 G A C11orf88 Missense_Mutation p.E187K 0.42 tolerated(0.46) benign(0.002) TCGA-OD-A75X-06 11 111739392 111739392 G A ALG9 5'UTR 0.43 TCGA-OD-A75X-06 11 112084482 112084482 G A BCO2 Silent p.R410R 0.38 TCGA-OD-A75X-06 11 113295346 113295346 C T DRD2 Missense_Mutation p.D10N 0.48 tolerated_low_confidence(0.85) benign(0.001) TCGA-OD-A75X-06 11 113660285 113660285 G A ATF4P4 RNA 0.43 TCGA-OD-A75X-06 11 118353182 118353182 T G KMT2A Missense_Mutation p.I1353S 0.12 benign(0.345) TCGA-OD-A75X-06 11 118499304 118499304 C T PHLDB1 Missense_Mutation p.L589F 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-OD-A75X-06 11 118656856 118656856 G C DDX6 Silent p.G35G 0.44 TCGA-OD-A75X-06 11 118958741 118958741 C T HMBS Intron 0.40 TCGA-OD-A75X-06 11 119031618 119031618 G A ABCG4 Silent p.T581T 0.50 TCGA-OD-A75X-06 11 119988939 119988939 G A TRIM29 Missense_Mutation p.S540F 0.50 deleterious_low_confidence(0) benign(0.352) TCGA-OD-A75X-06 11 1213324 1213324 G A MUC5AC RNA 0.19 TCGA-OD-A75X-06 11 1218120 1218120 G A MUC5AC RNA 0.38 TCGA-OD-A75X-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.41 deleterious(0) benign(0.398) TCGA-OD-A75X-06 11 123848091 123848091 C T OR10S1 Missense_Mutation p.G103E 0.39 tolerated(0.11) benign(0.036) TCGA-OD-A75X-06 11 123848214 123848214 A T OR10S1 Missense_Mutation p.V62E 0.41 deleterious(0) probably_damaging(0.964) TCGA-OD-A75X-06 11 123848215 123848215 C T OR10S1 Missense_Mutation p.V62M 0.38 deleterious(0.01) probably_damaging(0.946) TCGA-OD-A75X-06 11 123848276 123848276 G A OR10S1 Silent p.F41F 0.54 TCGA-OD-A75X-06 11 124135188 124135188 G A OR8G5 Missense_Mutation p.D156N 0.51 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 11 129814821 129814821 G A PRDM10 Missense_Mutation p.R203W 0.44 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 11 130109726 130109726 G A ZBTB44 Missense_Mutation p.P362S 0.41 tolerated(0.51) benign(0.046) TCGA-OD-A75X-06 11 133799649 133799649 G A IGSF9B Silent p.V516V 0.41 TCGA-OD-A75X-06 11 134022784 134022784 C G NCAPD3 3'UTR 0.47 TCGA-OD-A75X-06 11 14284353 14284353 G A RP11-21L19.1 3'Flank 0.39 TCGA-OD-A75X-06 11 14541860 14541860 C G PSMA1 Intron 0.39 TCGA-OD-A75X-06 11 1606189 1606189 C T KRTAP5-1 Silent p.G97G 0.53 TCGA-OD-A75X-06 11 1606190 1606190 C T KRTAP5-1 Missense_Mutation p.G97E 0.53 deleterious_low_confidence(0) unknown(0) TCGA-OD-A75X-06 11 17428444 17428444 G A ABCC8 Silent p.S1051S 0.41 TCGA-OD-A75X-06 11 17809611 17809611 C T SERGEF 3'UTR 0.45 TCGA-OD-A75X-06 11 18319221 18319221 G A HPS5 Missense_Mutation p.S403F 0.57 deleterious(0.01) probably_damaging(0.967) TCGA-OD-A75X-06 11 18451355 18451355 C T LDHC Missense_Mutation p.R106C 0.43 tolerated(0.06) probably_damaging(1) TCGA-OD-A75X-06 11 18498019 18498019 G A LDHAL6A Nonsense_Mutation p.W227* 0.41 TCGA-OD-A75X-06 11 21592356 21592356 C T NELL1 Missense_Mutation p.P676L 0.46 deleterious(0) probably_damaging(0.98) TCGA-OD-A75X-06 11 22747949 22747949 G A GAS2 Missense_Mutation p.E127K 0.46 deleterious(0) possibly_damaging(0.697) TCGA-OD-A75X-06 11 2338704 2338704 G A TSPAN32 Missense_Mutation p.E284K 0.57 deleterious_low_confidence(0.03) benign(0.011) TCGA-OD-A75X-06 11 26581463 26581463 G A MUC15 3'UTR 0.52 TCGA-OD-A75X-06 11 26586830 26586830 G A MUC15 Silent p.T219T 0.45 TCGA-OD-A75X-06 11 27743064 27743064 C T RP11-587D21.4 Intron 0.62 TCGA-OD-A75X-06 11 3765828 3765828 C T NUP98 Missense_Mutation p.G440E 0.36 deleterious(0.03) possibly_damaging(0.753) TCGA-OD-A75X-06 11 43380505 43380505 A G TTC17 Translation_Start_Site p.M1? 0.79 deleterious_low_confidence(0) benign(0.001) TCGA-OD-A75X-06 11 46747708 46747708 G A F2 Missense_Mutation p.D287N 0.88 tolerated(0.16) benign(0.053) TCGA-OD-A75X-06 11 4703858 4703858 G A OR51E2 Silent p.F28F 0.42 TCGA-OD-A75X-06 11 4869575 4869575 G A OR51S1 Silent p.F288F 0.37 TCGA-OD-A75X-06 11 4944991 4944991 G A OR51G1 Silent p.S193S 0.33 TCGA-OD-A75X-06 11 4968024 4968024 C T OR51A4 Missense_Mutation p.E103K 0.29 deleterious(0.02) possibly_damaging(0.861) TCGA-OD-A75X-06 11 49974695 49974695 C T OR4C13 Missense_Mutation p.H241Y 0.75 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-OD-A75X-06 11 5373581 5373581 C T OR51B6 Missense_Mutation p.P282S 0.41 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 11 55038106 55038106 G A TRIM48 3'UTR 0.56 TCGA-OD-A75X-06 11 55110948 55110948 C T OR4A16 Missense_Mutation p.S91F 0.38 deleterious_low_confidence(0.01) benign(0.295) TCGA-OD-A75X-06 11 55135721 55135721 C T OR4A15 Missense_Mutation p.S121F 0.44 deleterious_low_confidence(0.01) benign(0.203) TCGA-OD-A75X-06 11 55371373 55371373 G A OR4C11 Silent p.I159I 0.42 TCGA-OD-A75X-06 11 55418737 55418737 C T OR4S2 Missense_Mutation p.R120C 0.40 deleterious(0.01) benign(0.01) TCGA-OD-A75X-06 11 55735698 55735698 C T OR10AG1 Missense_Mutation p.G81E 0.37 deleterious(0.04) benign(0.167) TCGA-OD-A75X-06 11 55889947 55889947 C T OR8H3 Silent p.L33L 0.42 TCGA-OD-A75X-06 11 55889948 55889948 C T OR8H3 Missense_Mutation p.L34F 0.43 tolerated(0.16) benign(0.077) TCGA-OD-A75X-06 11 57156634 57156634 C T PRG2 Missense_Mutation p.G72E 0.41 tolerated(1) benign(0.071) TCGA-OD-A75X-06 11 58384275 58384275 G A ZFP91 Missense_Mutation p.E397K 0.40 deleterious(0.02) possibly_damaging(0.631) TCGA-OD-A75X-06 11 58711097 58711097 C T GLYATL1 Missense_Mutation p.P36S 0.34 tolerated(0.06) benign(0.118) TCGA-OD-A75X-06 11 58723113 58723113 G A GLYATL1 Silent p.L205L 0.35 TCGA-OD-A75X-06 11 60482508 60482508 G A MS4A8 Silent p.A183A 0.41 TCGA-OD-A75X-06 11 62066519 62066519 G A SCGB1D4 5'UTR 0.42 TCGA-OD-A75X-06 11 621829 621829 C T CDHR5 Missense_Mutation p.E130K 0.33 tolerated(0.85) probably_damaging(0.953) TCGA-OD-A75X-06 11 62327779 62327779 G A EEF1G Silent p.T335T 0.50 TCGA-OD-A75X-06 11 62327780 62327780 G A EEF1G Missense_Mutation p.T335I 0.50 tolerated(0.33) benign(0.086) TCGA-OD-A75X-06 11 62393590 62393590 C T GANAB Missense_Mutation p.R913Q 0.43 tolerated(0.23) probably_damaging(0.979) TCGA-OD-A75X-06 11 6265192 6265192 G A CNGA4 Silent p.G427G 0.41 TCGA-OD-A75X-06 11 63176292 63176292 C T SLC22A9 Silent p.L514L 0.41 TCGA-OD-A75X-06 11 64064723 64064723 G A KCNK4 Missense_Mutation p.G149D 0.50 deleterious(0.01) probably_damaging(0.961) TCGA-OD-A75X-06 11 64375003 64375003 A T NRXN2 Missense_Mutation p.S1602T 0.16 tolerated_low_confidence(0.5) benign(0.063) TCGA-OD-A75X-06 11 64514754 64514754 A T PYGM Missense_Mutation p.S752T 0.39 tolerated(0.06) probably_damaging(0.993) TCGA-OD-A75X-06 11 64597720 64597720 G A CDC42BPG Nonsense_Mutation p.R1105* 0.59 TCGA-OD-A75X-06 11 64600308 64600308 C T CDC42BPG Missense_Mutation p.G952D 0.40 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 11 64673805 64673805 C T ATG2A Splice_Site p.X1061_splice 0.35 TCGA-OD-A75X-06 11 6470070 6470070 C T TRIM3 3'UTR 0.64 TCGA-OD-A75X-06 11 64851560 64851560 A C CDCA5 5'UTR 0.33 TCGA-OD-A75X-06 11 65266269 65266269 T G MALAT1 RNA 0.44 TCGA-OD-A75X-06 11 65267689 65267689 G A MALAT1 RNA 0.62 TCGA-OD-A75X-06 11 65484141 65484141 T C KAT5 Missense_Mutation p.Y345H 0.40 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 11 65484175 65484175 T C KAT5 Missense_Mutation p.F356S 0.43 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 11 65650791 65650791 G A CTSW Missense_Mutation p.G306R 0.36 tolerated(0.25) benign(0.037) TCGA-OD-A75X-06 11 65650792 65650792 G A CTSW Missense_Mutation p.G306E 0.36 tolerated(0.19) benign(0.037) TCGA-OD-A75X-06 11 65810580 65810580 C T GAL3ST3 Missense_Mutation p.E232K 0.45 deleterious(0) possibly_damaging(0.9) TCGA-OD-A75X-06 11 66359170 66359170 G A CCDC87 Silent p.V439V 0.49 TCGA-OD-A75X-06 11 66457360 66457360 C T SPTBN2 Silent p.E1955E 0.52 TCGA-OD-A75X-06 11 66461281 66461281 C T SPTBN2 Missense_Mutation p.D1519N 0.37 tolerated(1) probably_damaging(0.997) TCGA-OD-A75X-06 11 67167056 67167056 C A PPP1CA Nonsense_Mutation p.E178* 0.36 TCGA-OD-A75X-06 11 67171788 67171788 C A TBC1D10C Missense_Mutation p.R39S 0.46 deleterious(0) benign(0.241) TCGA-OD-A75X-06 11 68321647 68321647 T A PPP6R3 Missense_Mutation p.I218N 0.51 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 11 68703904 68703904 C T IGHMBP2 Silent p.S652S 0.50 TCGA-OD-A75X-06 11 70224280 70224280 C T PPFIA1 Missense_Mutation p.P1177S 0.42 tolerated(0.47) benign(0.009) TCGA-OD-A75X-06 11 70224281 70224281 C T PPFIA1 Missense_Mutation p.P1177L 0.43 tolerated(0.59) benign(0.101) TCGA-OD-A75X-06 11 7064152 7064152 C T NLRP14 Missense_Mutation p.P299S 0.45 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 11 7070991 7070991 G A NLRP14 Missense_Mutation p.G738E 0.50 tolerated(0.42) benign(0.044) TCGA-OD-A75X-06 11 71276889 71276889 T A KRTAP5-10 Missense_Mutation p.S86T 0.36 unknown(0) TCGA-OD-A75X-06 11 71276890 71276890 C T KRTAP5-10 Missense_Mutation p.S86F 0.35 unknown(0) TCGA-OD-A75X-06 11 73759262 73759262 G A C2CD3 Missense_Mutation p.S1828F 0.41 deleterious(0.03) probably_damaging(0.967) TCGA-OD-A75X-06 11 74414401 74414401 G A CHRDL2 Missense_Mutation p.P299S 0.42 deleterious(0) probably_damaging(0.967) TCGA-OD-A75X-06 11 77404608 77404608 G A RSF1 Missense_Mutation p.R922C 0.37 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 11 78277273 78277273 G A NARS2 Nonsense_Mutation p.R140* 0.47 TCGA-OD-A75X-06 11 78369253 78369253 C T TENM4 Nonsense_Mutation p.W2720* 0.45 TCGA-OD-A75X-06 11 78399234 78399234 G A TENM4 Missense_Mutation p.P1709S 0.39 tolerated(0.1) probably_damaging(0.998) TCGA-OD-A75X-06 11 7846728 7846728 G A OR5P3 Silent p.S264S 0.42 TCGA-OD-A75X-06 11 7981752 7981752 G A NLRP10 Silent p.F469F 0.45 TCGA-OD-A75X-06 11 84028139 84028139 C T DLG2 Intron 0.44 TCGA-OD-A75X-06 11 92523233 92523233 G A FAT3 Missense_Mutation p.R1487K 0.43 benign(0.147) TCGA-OD-A75X-06 11 92533040 92533040 C T FAT3 Silent p.F2287F 0.43 TCGA-OD-A75X-06 11 92534247 92534247 T A FAT3 Missense_Mutation p.S2690T 0.43 possibly_damaging(0.5) TCGA-OD-A75X-06 11 92600370 92600370 C T FAT3 Missense_Mutation p.S4041L 0.27 possibly_damaging(0.506) TCGA-OD-A75X-06 11 95598807 95598807 C T MTMR2 Missense_Mutation p.E74K 0.45 tolerated(0.12) benign(0.017) TCGA-OD-A75X-06 11 99932104 99932104 C T CNTN5 Missense_Mutation p.R381C 0.41 deleterious(0) probably_damaging(0.987) TCGA-OD-A75X-06 12 100751080 100751080 G A SLC17A8 5'UTR 0.20 TCGA-OD-A75X-06 12 101581199 101581199 G A SLC5A8 Missense_Mutation p.P310S 0.58 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 12 102056169 102056169 C T MYBPC1 Missense_Mutation p.S664F 0.19 tolerated(0.63) probably_damaging(0.974) TCGA-OD-A75X-06 12 108011990 108011990 T A BTBD11 Missense_Mutation p.S763T 0.57 deleterious(0.03) probably_damaging(0.998) TCGA-OD-A75X-06 12 10856714 10856714 G A YBX3 Missense_Mutation p.P272S 0.55 tolerated(0.21) benign(0.028) TCGA-OD-A75X-06 12 109605814 109605814 C T ACACB Silent p.T300T 0.25 TCGA-OD-A75X-06 12 10961801 10961801 C T TAS2R9 Missense_Mutation p.A292T 0.46 tolerated(0.2) possibly_damaging(0.591) TCGA-OD-A75X-06 12 109661650 109661650 G A ACACB Missense_Mutation p.D1275N 0.52 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 12 11034902 11034902 T A PRH1 Nonsense_Mutation p.K145* 0.39 TCGA-OD-A75X-06 12 111342456 111342456 G A CCDC63 Silent p.V469V 0.32 TCGA-OD-A75X-06 12 111350935 111350935 G A MYL2 Silent p.L123L 0.69 TCGA-OD-A75X-06 12 111757899 111757899 A C CUX2 Missense_Mutation p.I696L 0.21 deleterious(0.01) probably_damaging(0.914) TCGA-OD-A75X-06 12 112119504 112119504 G A BRAP Missense_Mutation p.S127L 0.61 tolerated(0.32) benign(0.081) TCGA-OD-A75X-06 12 112647831 112647831 T A HECTD4 Missense_Mutation p.T2473S 0.35 benign(0.107) TCGA-OD-A75X-06 12 112669439 112669439 G A HECTD4 Silent p.I1880I 0.28 TCGA-OD-A75X-06 12 117691547 117691547 G A NOS1 Silent p.V882V 0.53 TCGA-OD-A75X-06 12 117696239 117696239 C T NOS1 Missense_Mutation p.E832K 0.14 tolerated(0.14) probably_damaging(0.928) TCGA-OD-A75X-06 12 118199193 118199193 G A KSR2 Silent p.S203S 0.56 TCGA-OD-A75X-06 12 120599834 120599834 G A GCN1L1 Missense_Mutation p.S731F 0.38 benign(0.444) TCGA-OD-A75X-06 12 120791169 120791169 G A MSI1 Silent p.F222F 0.31 TCGA-OD-A75X-06 12 121431475 121431475 G A HNF1A Missense_Mutation p.E227K 0.49 deleterious(0.02) possibly_damaging(0.609) TCGA-OD-A75X-06 12 129566555 129566555 C T TMEM132D Missense_Mutation p.E558K 0.23 deleterious(0.01) benign(0.379) TCGA-OD-A75X-06 12 132490833 132490833 C T EP400 Missense_Mutation p.R1038W 0.20 unknown(0) TCGA-OD-A75X-06 12 132498056 132498056 C T EP400 Silent p.I1211I 0.25 TCGA-OD-A75X-06 12 13768457 13768457 G A GRIN2B Silent p.I490I 0.66 TCGA-OD-A75X-06 12 13906778 13906778 C T GRIN2B Missense_Mutation p.M161I 0.38 deleterious(0) probably_damaging(0.978) TCGA-OD-A75X-06 12 18524145 18524145 C T PIK3C2G Missense_Mutation p.P553S 0.43 deleterious(0.02) probably_damaging(1) TCGA-OD-A75X-06 12 18573875 18573875 T C PIK3C2G Silent p.S731S 0.50 TCGA-OD-A75X-06 12 1994045 1994045 G A CACNA2D4 Silent p.F387F 0.32 TCGA-OD-A75X-06 12 21926284 21926284 G A KCNJ8 Silent p.I89I 0.60 TCGA-OD-A75X-06 12 2783710 2783710 A G CACNA1C Missense_Mutation p.N1625S 0.38 tolerated(0.07) possibly_damaging(0.46) TCGA-OD-A75X-06 12 31236892 31236892 C T DDX11 Missense_Mutation p.S97F 0.55 deleterious(0.01) possibly_damaging(0.781) TCGA-OD-A75X-06 12 40010843 40010843 C T ABCD2 Missense_Mutation p.G356E 0.53 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 12 40634293 40634293 G A LRRK2 Missense_Mutation p.E194K 0.65 deleterious(0.02) probably_damaging(0.997) TCGA-OD-A75X-06 12 41966399 41966399 C T PDZRN4 Silent p.L606L 0.48 TCGA-OD-A75X-06 12 47629501 47629501 C T PCED1B Missense_Mutation p.R219C 0.32 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 12 4835830 4835830 A G GALNT8 Missense_Mutation p.Q115R 0.60 tolerated(0.55) benign(0.001) TCGA-OD-A75X-06 12 48877038 48877038 C T C12orf54 5'UTR 0.64 TCGA-OD-A75X-06 12 48921815 48921815 C T OR8S1 Missense_Mutation p.P337S 0.24 benign(0.001) TCGA-OD-A75X-06 12 51853752 51853752 G A SLC4A8 Missense_Mutation p.M291I 0.27 deleterious(0.02) benign(0.118) TCGA-OD-A75X-06 12 52635399 52635399 T A KRT7 Silent p.A279A 0.19 TCGA-OD-A75X-06 12 52886952 52886952 G A KRT6A Silent p.T7T 0.50 TCGA-OD-A75X-06 12 53238382 53238382 C T KRT78 Silent p.R294R 0.59 TCGA-OD-A75X-06 12 53412708 53412708 C G EIF4B Missense_Mutation p.S93W 0.59 deleterious(0.02) possibly_damaging(0.854) TCGA-OD-A75X-06 12 53715136 53715136 G A AAAS Silent p.F38F 0.64 TCGA-OD-A75X-06 12 54686212 54686212 G A NFE2 Silent p.A356A 0.23 TCGA-OD-A75X-06 12 54686213 54686213 G A NFE2 Missense_Mutation p.A356V 0.24 tolerated(0.61) probably_damaging(0.956) TCGA-OD-A75X-06 12 54917697 54917697 C T NCKAP1L Missense_Mutation p.P705S 0.29 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 12 55641793 55641793 C T OR6C74 Missense_Mutation p.S241F 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OD-A75X-06 12 56094071 56094071 G A ITGA7 Silent p.I259I 0.44 TCGA-OD-A75X-06 12 56094762 56094762 G A ITGA7 Silent p.C197C 0.44 TCGA-OD-A75X-06 12 56109823 56109823 G A BLOC1S1 5'UTR 0.70 TCGA-OD-A75X-06 12 56514527 56514527 C T ZC3H10 Missense_Mutation p.P61S 0.57 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 12 57828922 57828922 G A INHBC Missense_Mutation p.G85R 0.52 tolerated(0.31) benign(0.015) TCGA-OD-A75X-06 12 58002893 58002893 G A DTX3 Silent p.R334R 0.24 TCGA-OD-A75X-06 12 58127820 58127820 A G AGAP2 Missense_Mutation p.V513A 0.23 deleterious(0.01) possibly_damaging(0.845) TCGA-OD-A75X-06 12 66152609 66152609 G A RPSAP52 RNA 0.55 TCGA-OD-A75X-06 12 6631172 6631172 C T NCAPD2 Silent p.I641I 0.30 TCGA-OD-A75X-06 12 71139735 71139735 G C PTPRR Silent p.V290V 0.13 TCGA-OD-A75X-06 12 7288061 7288061 C T CLSTN3 Silent p.S174S 0.32 TCGA-OD-A75X-06 12 73014975 73014975 T C TRHDE Missense_Mutation p.Y808H 0.12 tolerated(0.54) benign(0.134) TCGA-OD-A75X-06 12 7470723 7470723 G A ACSM4 Missense_Mutation p.G289E 0.64 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 12 7848234 7848234 G A GDF3 Nonsense_Mutation p.Q31* 0.34 TCGA-OD-A75X-06 12 80735823 80735823 G A OTOGL Missense_Mutation p.E1707K 0.56 tolerated(0.28) benign(0.21) TCGA-OD-A75X-06 12 8374650 8374650 C T FAM90A1 Missense_Mutation p.G388E 0.18 tolerated(0.08) benign(0.206) TCGA-OD-A75X-06 12 85546801 85546801 G A LRRIQ1 Splice_Site p.X1474_splice 0.59 TCGA-OD-A75X-06 12 89998001 89998001 G A ATP2B1 Silent p.F855F 0.58 TCGA-OD-A75X-06 12 95926702 95926702 G A USP44 Missense_Mutation p.T444I 0.51 deleterious(0.01) benign(0.365) TCGA-OD-A75X-06 12 96350637 96350637 G A AMDHD1 Missense_Mutation p.D162N 0.29 tolerated(0.53) benign(0.008) TCGA-OD-A75X-06 13 108922766 108922766 G A TNFSF13B Missense_Mutation p.E140K 0.37 tolerated(0.14) benign(0.265) TCGA-OD-A75X-06 13 109518558 109518558 C T MYO16 Missense_Mutation p.P443S 0.26 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 13 111114468 111114468 C T COL4A2 Missense_Mutation p.P535L 0.60 possibly_damaging(0.823) TCGA-OD-A75X-06 13 113479873 113479873 G A ATP11A Silent p.E334E 0.13 TCGA-OD-A75X-06 13 113798329 113798329 A C F10 Missense_Mutation p.T223P 0.21 tolerated(0.07) benign(0.025) TCGA-OD-A75X-06 13 21417936 21417936 G A XPO4 Silent p.F182F 0.33 TCGA-OD-A75X-06 13 25439026 25439026 C T RNF17 Missense_Mutation p.P1331S 0.24 tolerated(0.09) benign(0.014) TCGA-OD-A75X-06 13 29246530 29246530 G A POMP Missense_Mutation p.G107S 0.11 deleterious(0.02) possibly_damaging(0.871) TCGA-OD-A75X-06 13 29599894 29599894 C T MTUS2 Silent p.H363H 0.81 TCGA-OD-A75X-06 13 30782818 30782818 G A KATNAL1 Silent p.I444I 0.30 TCGA-OD-A75X-06 13 32912282 32912282 A G BRCA2 Missense_Mutation p.K1264E 0.30 tolerated(0.18) benign(0.335) TCGA-OD-A75X-06 13 36049891 36049891 G A MAB21L1 Missense_Mutation p.R129W 0.21 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 13 36229804 36229804 C T NBEA Silent p.I2739I 0.23 TCGA-OD-A75X-06 13 36888548 36888548 C A SPG20 Missense_Mutation p.W433C 0.55 deleterious(0) probably_damaging(0.95) TCGA-OD-A75X-06 13 42763238 42763238 C T DGKH Missense_Mutation p.P569S 0.17 tolerated(1) benign(0.001) TCGA-OD-A75X-06 13 46287415 46287415 G A SPERT Silent p.A85A 0.17 TCGA-OD-A75X-06 13 46924403 46924403 G A KIAA0226L Missense_Mutation p.P472S 0.31 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 13 49795297 49795297 G A MLNR Nonsense_Mutation p.W275* 0.11 TCGA-OD-A75X-06 13 50204683 50204683 G A ARL11 Missense_Mutation p.G34S 0.36 tolerated(0.47) benign(0.047) TCGA-OD-A75X-06 13 50586079 50586079 G A TRIM13 Missense_Mutation p.M4I 0.29 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 13 52523879 52523879 G A ATP7B Silent p.I928I 0.28 TCGA-OD-A75X-06 13 60545101 60545101 G A DIAPH3 Missense_Mutation p.P615L 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-OD-A75X-06 13 67800231 67800231 G A PCDH9 Missense_Mutation p.A781V 0.62 tolerated(0.14) benign(0.03) TCGA-OD-A75X-06 13 72049838 72049838 C T DACH1 Missense_Mutation p.D674N 0.63 probably_damaging(0.913) TCGA-OD-A75X-06 13 75866276 75866276 C T TBC1D4 Missense_Mutation p.D1150N 0.74 tolerated(1) benign(0.016) TCGA-OD-A75X-06 13 77459429 77459429 G A KCTD12 Silent p.S285S 0.82 TCGA-OD-A75X-06 13 79175443 79175443 G A POU4F1 3'UTR 0.69 TCGA-OD-A75X-06 13 84454410 84454410 G A SLITRK1 Silent p.I411I 0.11 TCGA-OD-A75X-06 13 95264488 95264488 C T GPR180 Missense_Mutation p.P117S 0.39 tolerated(0.7) benign(0.052) TCGA-OD-A75X-06 14 101435304 101435304 A C SNORD114-12 RNA 0.27 TCGA-OD-A75X-06 14 102900862 102900862 A G TECPR2 Missense_Mutation p.M570V 0.33 tolerated_low_confidence(0.74) benign(0) TCGA-OD-A75X-06 14 103566802 103566802 C T EXOC3L4 Silent p.S82S 0.55 TCGA-OD-A75X-06 14 106622086 106622086 C T IGHV3-16 Missense_Mutation p.M53I 0.30 deleterious_low_confidence(0.03) benign(0.257) TCGA-OD-A75X-06 14 19378517 19378517 G A OR11H12 Silent p.Q308Q 0.27 TCGA-OD-A75X-06 14 20216483 20216483 G A OR4Q3 Missense_Mutation p.M299I 0.42 tolerated(0.19) benign(0.003) TCGA-OD-A75X-06 14 20443711 20443711 C T OR4K15 Missense_Mutation p.P12S 0.33 tolerated_low_confidence(0.95) benign(0.006) TCGA-OD-A75X-06 14 20443712 20443712 C T OR4K15 Missense_Mutation p.P12L 0.33 tolerated_low_confidence(0.22) benign(0.059) TCGA-OD-A75X-06 14 20483167 20483167 G A OR4K14 Silent p.F62F 0.47 TCGA-OD-A75X-06 14 20586059 20586059 C T OR4K17 Missense_Mutation p.T165I 0.60 deleterious(0.05) benign(0.272) TCGA-OD-A75X-06 14 20586540 20586540 G A OR4K17 Missense_Mutation p.M325I 0.30 tolerated(0.09) possibly_damaging(0.747) TCGA-OD-A75X-06 14 21793427 21793427 G A RPGRIP1 Nonsense_Mutation p.W751* 0.63 TCGA-OD-A75X-06 14 21826572 21826572 C T SUPT16H Missense_Mutation p.M772I 0.57 deleterious(0.02) benign(0.165) TCGA-OD-A75X-06 14 21837440 21837440 G A SUPT16H Silent p.D235D 0.56 TCGA-OD-A75X-06 14 22180973 22180973 G A TRAV2 Missense_Mutation p.R82Q 0.26 tolerated(0.29) possibly_damaging(0.863) TCGA-OD-A75X-06 14 22409834 22409834 C T TRAV9-2 Silent p.F108F 0.46 TCGA-OD-A75X-06 14 23346598 23346598 C T LRP10 Silent p.P668P 0.55 TCGA-OD-A75X-06 14 23393690 23393690 G A PRMT5 Silent p.V358V 0.30 TCGA-OD-A75X-06 14 23398597 23398597 G A PRMT5 5'UTR 0.76 TCGA-OD-A75X-06 14 23898176 23898176 G A MYH7 Silent p.F465F 0.55 TCGA-OD-A75X-06 14 24040407 24040407 G C JPH4 Silent p.G511G 0.61 TCGA-OD-A75X-06 14 24730947 24730947 G A TGM1 Silent p.S154S 0.55 TCGA-OD-A75X-06 14 24808479 24808479 G A RIPK3 Silent p.F71F 0.26 TCGA-OD-A75X-06 14 24886501 24886501 C T NYNRIN Missense_Mutation p.P1849L 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OD-A75X-06 14 24910197 24910197 G A KHNYN 3'UTR 0.17 TCGA-OD-A75X-06 14 33291520 33291520 G A AKAP6 Missense_Mutation p.G1501S 0.21 deleterious_low_confidence(0.02) benign(0.062) TCGA-OD-A75X-06 14 33293957 33293957 G A AKAP6 Missense_Mutation p.R2313Q 0.58 tolerated_low_confidence(0.1) benign(0.003) TCGA-OD-A75X-06 14 36841013 36841013 C T DPPA3P2 RNA 0.21 TCGA-OD-A75X-06 14 38296443 38296443 C T TTC6 Missense_Mutation p.H1724Y 0.39 tolerated(0.15) probably_damaging(0.999) TCGA-OD-A75X-06 14 50619804 50619804 G A SOS2 Silent p.F715F 0.50 TCGA-OD-A75X-06 14 52734523 52734523 C T PTGDR 5'UTR 0.27 TCGA-OD-A75X-06 14 53348116 53348116 G A FERMT2 Missense_Mutation p.P200S 0.53 tolerated(0.07) possibly_damaging(0.575) TCGA-OD-A75X-06 14 55457990 55457990 G A WDHD1 Missense_Mutation p.P428S 0.61 tolerated(0.1) possibly_damaging(0.521) TCGA-OD-A75X-06 14 56233096 56233096 C T RP11-813I20.2 Intron 0.85 TCGA-OD-A75X-06 14 57949829 57949829 C T C14orf105 Missense_Mutation p.G116E 0.89 tolerated(1) benign(0.006) TCGA-OD-A75X-06 14 59797987 59797987 C T DAAM1 Missense_Mutation p.P541S 0.21 tolerated(0.45) unknown(0) TCGA-OD-A75X-06 14 68264870 68264870 G A ZFYVE26 Silent p.S703S 0.63 TCGA-OD-A75X-06 14 68331730 68331730 C T RAD51B Missense_Mutation p.P109L 0.38 deleterious(0) probably_damaging(0.979) TCGA-OD-A75X-06 14 73959350 73959350 A T HEATR4 Intron 0.87 TCGA-OD-A75X-06 14 75329906 75329906 T A PROX2 Missense_Mutation p.K211M 0.95 deleterious(0.03) benign(0.015) TCGA-OD-A75X-06 14 76488722 76488722 C T IFT43 Missense_Mutation p.S67F 0.28 deleterious(0.05) benign(0.211) TCGA-OD-A75X-06 14 77255464 77255464 G A ANGEL1 3'UTR 0.55 TCGA-OD-A75X-06 14 80669068 80669068 G A DIO2 Silent p.F298F 0.50 TCGA-OD-A75X-06 14 88936315 88936315 A G PTPN21 Missense_Mutation p.M984T 0.54 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 14 88946333 88946333 T C PTPN21 Missense_Mutation p.Y481C 0.26 tolerated(0.18) benign(0.013) TCGA-OD-A75X-06 14 91804390 91804390 C T CCDC88C Missense_Mutation p.E337K 0.51 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 14 91804391 91804391 C T CCDC88C Silent p.K336K 0.50 TCGA-OD-A75X-06 14 92436196 92436196 G A TRIP11 Missense_Mutation p.P1921S 0.62 tolerated(0.06) benign(0.094) TCGA-OD-A75X-06 14 94707102 94707102 C T PPP4R4 Missense_Mutation p.H316Y 0.44 tolerated(0.2) benign(0.245) TCGA-OD-A75X-06 14 94931059 94931059 G A SERPINA9 Silent p.S363S 0.27 TCGA-OD-A75X-06 14 95090106 95090106 G A SERPINA3 Silent p.Q409Q 0.25 TCGA-OD-A75X-06 14 95107114 95107114 C T SERPINA13P RNA 0.70 TCGA-OD-A75X-06 15 101549045 101549045 C T LRRK1 Missense_Mutation p.L256F 0.33 tolerated(0.09) benign(0.026) TCGA-OD-A75X-06 15 23444038 23444038 G A AC100757.1 5'Flank 0.18 TCGA-OD-A75X-06 15 25492538 25492538 T C SNORD115-42 RNA 0.77 TCGA-OD-A75X-06 15 29091047 29091047 T G GOLGA6L7P Intron 0.71 TCGA-OD-A75X-06 15 37110336 37110336 G A CSNK1A1P1 RNA 1.00 TCGA-OD-A75X-06 15 41195552 41195552 T - VPS18 3'UTR 0.39 TCGA-OD-A75X-06 15 42279460 42279460 G A PLA2G4E Missense_Mutation p.R649W 0.81 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 15 44028197 44028197 G A RNU6-354P 5'Flank 0.80 TCGA-OD-A75X-06 15 45003799 45003813 GAGGCTATCCAGCGT - B2M Splice_Site p.X20_splice 0.84 TCGA-OD-A75X-06 15 49176513 49176513 A G SHC4 Missense_Mutation p.S258P 0.97 deleterious(0.01) probably_damaging(0.999) TCGA-OD-A75X-06 15 50211045 50211045 C T ATP8B4 Missense_Mutation p.D676N 0.78 deleterious(0) possibly_damaging(0.486) TCGA-OD-A75X-06 15 58253474 58253474 C T ALDH1A2 Missense_Mutation p.E424K 0.89 tolerated(0.2) possibly_damaging(0.722) TCGA-OD-A75X-06 15 62257029 62257029 T G VPS13C Missense_Mutation p.Q1028P 0.47 deleterious(0) benign(0.209) TCGA-OD-A75X-06 15 63966673 63966673 T G HERC1 Missense_Mutation p.K2572Q 0.36 benign(0.415) TCGA-OD-A75X-06 15 63970294 63970294 C T HERC1 Missense_Mutation p.E2274K 0.47 benign(0.003) TCGA-OD-A75X-06 15 64455229 64455229 G A PPIB 5'UTR 0.50 TCGA-OD-A75X-06 15 65558937 65558937 G A PARP16 Missense_Mutation p.S161F 0.36 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.36 tolerated(0.08) probably_damaging(0.913) TCGA-OD-A75X-06 15 66729163 66729163 C T MAP2K1 Missense_Mutation p.P124L 0.37 deleterious(0) probably_damaging(0.995) TCGA-OD-A75X-06 15 72454190 72454190 G A GRAMD2 3'UTR 0.55 TCGA-OD-A75X-06 15 74032661 74032661 G A C15orf59 Missense_Mutation p.S160F 0.54 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 15 78212361 78212361 C T RP11-114H24.7 Intron 0.35 TCGA-OD-A75X-06 15 78927929 78927929 C T CHRNB4 Missense_Mutation p.G19E 0.39 tolerated(0.15) possibly_damaging(0.545) TCGA-OD-A75X-06 15 79067089 79067089 G A ADAMTS7 Missense_Mutation p.R585C 0.12 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 15 80845064 80845064 C T ARNT2 Silent p.I346I 0.37 TCGA-OD-A75X-06 15 82335390 82335390 G A MEX3B 3'UTR 0.58 TCGA-OD-A75X-06 15 82335391 82335391 G A MEX3B 3'UTR 0.58 TCGA-OD-A75X-06 15 83226581 83226581 G A CPEB1 Nonsense_Mutation p.R179* 0.39 TCGA-OD-A75X-06 15 86124981 86124981 C T AKAP13 Missense_Mutation p.P1228S 0.47 tolerated_low_confidence(0.2) benign(0.04) TCGA-OD-A75X-06 15 89400085 89400085 C T ACAN Silent p.A1423A 0.40 TCGA-OD-A75X-06 15 89837175 89837175 T C FANCI Silent p.S801S 0.31 TCGA-OD-A75X-06 15 90328730 90328730 C T ANPEP Silent p.L918L 0.44 TCGA-OD-A75X-06 16 11065064 11065064 C T CLEC16A Missense_Mutation p.T192I 0.22 deleterious(0) possibly_damaging(0.734) TCGA-OD-A75X-06 16 11071176 11071176 C T CLEC16A Missense_Mutation p.L275F 0.49 deleterious(0) probably_damaging(0.993) TCGA-OD-A75X-06 16 1250322 1250322 C A CACNA1H Silent p.I290I 0.79 TCGA-OD-A75X-06 16 1261264 1261264 C T CACNA1H Silent p.F1440F 0.46 TCGA-OD-A75X-06 16 1400846 1400846 G A TSR3 Missense_Mutation p.S163F 0.30 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 16 16150146 16150146 C T ABCC1 Silent p.P557P 0.48 TCGA-OD-A75X-06 16 20384393 20384393 C T PDILT Missense_Mutation p.E245K 0.30 tolerated(0.23) benign(0.173) TCGA-OD-A75X-06 16 20477027 20477027 G A ACSM2A Silent p.V122V 0.26 TCGA-OD-A75X-06 16 20482414 20482414 C T ACSM2A Missense_Mutation p.H206Y 0.54 deleterious(0.02) benign(0.163) TCGA-OD-A75X-06 16 2129087 2129087 C T TSC2 Silent p.S1007S 0.47 TCGA-OD-A75X-06 16 21995787 21995787 C T PDZD9 Missense_Mutation p.G139E 0.45 deleterious(0.03) possibly_damaging(0.663) TCGA-OD-A75X-06 16 23706574 23706574 C T ERN2 Missense_Mutation p.G631R 0.59 deleterious(0.01) possibly_damaging(0.691) TCGA-OD-A75X-06 16 24980025 24980025 A T ARHGAP17 Missense_Mutation p.F114Y 0.41 deleterious(0.03) possibly_damaging(0.522) TCGA-OD-A75X-06 16 2577827 2577827 G A AMDHD2 Missense_Mutation p.E157K 0.36 tolerated(0.22) benign(0.125) TCGA-OD-A75X-06 16 27221524 27221524 C T KDM8 Missense_Mutation p.P65L 0.43 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 16 27375186 27375186 G A IL4R 3'UTR 0.47 TCGA-OD-A75X-06 16 28848204 28848204 C T ATXN2L 3'UTR 0.40 TCGA-OD-A75X-06 16 30035385 30035385 C A C16orf92 Missense_Mutation p.L119I 0.37 deleterious(0.01) possibly_damaging(0.801) TCGA-OD-A75X-06 16 30774532 30774532 C T RNF40 Nonsense_Mutation p.R76* 0.42 TCGA-OD-A75X-06 16 31287013 31287013 G A ITGAM Silent p.A334A 0.52 TCGA-OD-A75X-06 16 314957 314957 G A ITFG3 Missense_Mutation p.G532E 0.34 tolerated(1) benign(0.002) TCGA-OD-A75X-06 16 314958 314958 G A ITFG3 Silent p.G532G 0.35 TCGA-OD-A75X-06 16 3169792 3169792 C T ZNF205 Silent p.S377S 0.52 TCGA-OD-A75X-06 16 3340184 3340184 C T ZNF263 Missense_Mutation p.P560S 0.56 tolerated(0.77) benign(0.001) TCGA-OD-A75X-06 16 4254582 4254582 C T SRL Missense_Mutation p.E39K 0.35 tolerated(0.11) benign(0.176) TCGA-OD-A75X-06 16 4559640 4559640 G A HMOX2 Silent p.E278E 0.34 TCGA-OD-A75X-06 16 4743802 4743802 C T NUDT16L1 Silent p.S25S 0.36 TCGA-OD-A75X-06 16 47627449 47627449 C T PHKB Silent p.F369F 0.38 TCGA-OD-A75X-06 16 5046880 5046880 C T SEC14L5 Missense_Mutation p.R269W 0.45 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 16 5064878 5064878 G A SEC14L5 Silent p.L666L 0.45 TCGA-OD-A75X-06 16 57397432 57397432 G A CCL22 Missense_Mutation p.D72N 0.31 tolerated(1) benign(0.087) TCGA-OD-A75X-06 16 57509062 57509062 C T DOK4 Missense_Mutation p.S120N 0.46 tolerated(0.17) benign(0.012) TCGA-OD-A75X-06 16 58318621 58318621 C T PRSS54 Missense_Mutation p.G176E 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-OD-A75X-06 16 65032667 65032667 T G CDH11 Silent p.S107S 0.37 TCGA-OD-A75X-06 16 66950205 66950205 C T CDH16 Missense_Mutation p.R86Q 0.36 deleterious(0.01) possibly_damaging(0.833) TCGA-OD-A75X-06 16 67213944 67213944 C T KIAA0895L Silent p.Q190Q 0.38 TCGA-OD-A75X-06 16 67289320 67289320 T C SLC9A5 Missense_Mutation p.F227L 0.48 deleterious(0) probably_damaging(0.995) TCGA-OD-A75X-06 16 67320515 67320515 C T PLEKHG4 Silent p.F900F 0.36 TCGA-OD-A75X-06 16 67991661 67991661 G A SLC12A4 Silent p.T178T 0.42 TCGA-OD-A75X-06 16 68289777 68289777 C T PLA2G15 Missense_Mutation p.T204M 0.57 tolerated(0.28) benign(0.318) TCGA-OD-A75X-06 16 68835626 68835627 - C CDH1 Frame_Shift_Ins p.R74Pfs*20 0.36 TCGA-OD-A75X-06 16 69352604 69352604 A G VPS4A Silent p.E111E 0.45 TCGA-OD-A75X-06 16 69373479 69373479 C T NIP7 5'UTR 0.45 TCGA-OD-A75X-06 16 70546202 70546202 G A COG4 Silent p.F226F 0.40 TCGA-OD-A75X-06 16 71101260 71101260 C T HYDIN Missense_Mutation p.E670K 0.43 probably_damaging(0.97) TCGA-OD-A75X-06 16 71606214 71606214 C T TAT Nonsense_Mutation p.W194* 0.39 TCGA-OD-A75X-06 16 71697894 71697894 G A PHLPP2 Silent p.L631L 0.33 TCGA-OD-A75X-06 16 72170466 72170466 C T PMFBP1 Missense_Mutation p.E362K 0.39 tolerated(0.14) benign(0.27) TCGA-OD-A75X-06 16 745936 745936 G A FBXL16 Intron 0.50 TCGA-OD-A75X-06 16 745937 745937 G A FBXL16 Intron 0.50 TCGA-OD-A75X-06 16 7568235 7568235 C T RBFOX1 Silent p.P58P 0.55 TCGA-OD-A75X-06 16 76501376 76501376 G A CNTNAP4 Silent p.G464G 0.43 TCGA-OD-A75X-06 16 76528873 76528873 C T CNTNAP4 Missense_Mutation p.S643L 0.42 tolerated(1) benign(0) TCGA-OD-A75X-06 16 76532518 76532518 C T CNTNAP4 Silent p.I691I 0.25 TCGA-OD-A75X-06 16 81095088 81095088 G A C16orf46 Missense_Mutation p.S289F 0.48 deleterious(0.04) possibly_damaging(0.731) TCGA-OD-A75X-06 16 83065753 83065753 G A CDH13 Missense_Mutation p.R146Q 0.38 tolerated(0.72) benign(0.011) TCGA-OD-A75X-06 16 84224979 84224979 C T ADAD2 Missense_Mutation p.A48V 0.33 tolerated_low_confidence(0.23) benign(0.004) TCGA-OD-A75X-06 16 8858601 8858601 C T ABAT Missense_Mutation p.P152S 0.33 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 16 88931526 88931526 C T PABPN1L Missense_Mutation p.G157E 0.31 deleterious(0.02) benign(0.125) TCGA-OD-A75X-06 16 88931527 88931527 C T PABPN1L Missense_Mutation p.G157R 0.33 deleterious(0.04) benign(0.301) TCGA-OD-A75X-06 16 89758292 89758292 T A CDK10 Silent p.A138A 0.46 TCGA-OD-A75X-06 17 10398395 10398395 C T MYH1 Silent p.L1773L 0.47 TCGA-OD-A75X-06 17 10399321 10399321 G A MYH1 Silent p.I1705I 0.47 TCGA-OD-A75X-06 17 10405196 10405196 G A MYH1 Silent p.I1048I 0.27 TCGA-OD-A75X-06 17 10411879 10411879 G A MYH1 Silent p.F566F 0.46 TCGA-OD-A75X-06 17 10435066 10435066 C T MYH2 Missense_Mutation p.E861K 0.43 deleterious(0.04) possibly_damaging(0.484) TCGA-OD-A75X-06 17 11651059 11651059 C T DNAH9 Missense_Mutation p.P2196S 0.40 possibly_damaging(0.612) TCGA-OD-A75X-06 17 12626182 12626182 C T MYOCD Missense_Mutation p.S91F 0.43 deleterious(0) probably_damaging(0.969) TCGA-OD-A75X-06 17 12642635 12642635 C T MYOCD Missense_Mutation p.A236V 0.52 deleterious(0.01) benign(0.325) TCGA-OD-A75X-06 17 12656048 12656048 C T MYOCD Silent p.S481S 0.45 TCGA-OD-A75X-06 17 14140027 14140027 T C CDRT15 Missense_Mutation p.I42V 0.37 tolerated_low_confidence(0.12) benign(0.001) TCGA-OD-A75X-06 17 15502001 15502001 C T CDRT1 Intron 0.40 TCGA-OD-A75X-06 17 15620225 15620225 C T ZNF286A Missense_Mutation p.S396F 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-OD-A75X-06 17 21217725 21217725 A G MAP2K3 3'UTR 0.38 TCGA-OD-A75X-06 17 2237874 2237874 G A TSR1 Silent p.I291I 0.50 TCGA-OD-A75X-06 17 26085919 26085919 G A NOS2 Silent p.F1114F 0.34 TCGA-OD-A75X-06 17 27287921 27287921 G T SEZ6 Nonsense_Mutation p.Y437* 0.42 TCGA-OD-A75X-06 17 2901625 2901625 C T RAP1GAP2 Silent p.I385I 0.47 TCGA-OD-A75X-06 17 2921491 2921491 C T RAP1GAP2 Missense_Mutation p.S544L 0.67 tolerated(0.11) benign(0.004) TCGA-OD-A75X-06 17 30648299 30648299 G A RHBDL3 3'UTR 0.59 TCGA-OD-A75X-06 17 32483611 32483611 C T ASIC2 5'UTR 0.55 TCGA-OD-A75X-06 17 33738475 33738475 C G SLFN12 Missense_Mutation p.R540T 0.41 tolerated(0.89) benign(0.227) TCGA-OD-A75X-06 17 34881076 34881076 C T MYO19 Missense_Mutation p.E133K 0.50 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 17 37265599 37265599 C T PLXDC1 Missense_Mutation p.E101K 0.58 deleterious(0) benign(0.306) TCGA-OD-A75X-06 17 39150226 39150226 A G KRTAP3-3 Silent p.L42L 0.12 TCGA-OD-A75X-06 17 39155982 39155982 A G KRTAP3-2 Silent p.L42L 0.38 TCGA-OD-A75X-06 17 39280338 39280338 G A KRTAP4-12 Nonsense_Mutation p.Q13* 0.41 TCGA-OD-A75X-06 17 39580293 39580293 G A KRT37 Silent p.L161L 0.39 TCGA-OD-A75X-06 17 3990781 3990781 G A ZZEF1 Silent p.F763F 0.44 TCGA-OD-A75X-06 17 39914700 39914700 A T JUP Missense_Mutation p.M575K 0.47 tolerated(0.29) benign(0.022) TCGA-OD-A75X-06 17 40618525 40618525 C T ATP6V0A1 Nonsense_Mutation p.R66* 0.46 TCGA-OD-A75X-06 17 41847127 41847127 G A DUSP3 Silent p.I136I 0.37 TCGA-OD-A75X-06 17 42090521 42090521 G A TMEM101 Silent p.V107V 0.41 TCGA-OD-A75X-06 17 42337855 42337855 T C SLC4A1 Silent p.Q134Q 0.49 TCGA-OD-A75X-06 17 42340231 42340231 C T SLC4A1 Missense_Mutation p.E2K 0.51 tolerated_low_confidence(0.2) benign(0.003) TCGA-OD-A75X-06 17 43138778 43138778 T C NMT1 Silent p.H27H 0.36 TCGA-OD-A75X-06 17 43531009 43531009 C T PLEKHM1 Missense_Mutation p.D737N 0.35 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 17 45201287 45201287 G A CDC27 Missense_Mutation p.P740S 0.37 deleterious(0) probably_damaging(0.99) TCGA-OD-A75X-06 17 45376805 45376805 G A ITGB3 Missense_Mutation p.E608K 0.40 tolerated(0.45) benign(0.036) TCGA-OD-A75X-06 17 45773460 45773460 C T TBKBP1 5'UTR 0.34 TCGA-OD-A75X-06 17 46867382 46867382 G A TTLL6 Silent p.I437I 0.34 TCGA-OD-A75X-06 17 47788540 47788540 C A FAM117A 3'UTR 0.53 TCGA-OD-A75X-06 17 48153768 48153768 C T ITGA3 Missense_Mutation p.R585W 0.40 deleterious(0) possibly_damaging(0.88) TCGA-OD-A75X-06 17 48356586 48356586 C A TMEM92 Missense_Mutation p.P133T 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-OD-A75X-06 17 48761318 48761318 C T ABCC3 Silent p.I1321I 0.41 TCGA-OD-A75X-06 17 48768423 48768455 AACCTGACCACTTCTCTCTTTTTTGACTAGGGT - ABCC3 Splice_Site p.X1492_splice 0.41 TCGA-OD-A75X-06 17 56344924 56344924 C T LPO Silent p.F636F 0.50 TCGA-OD-A75X-06 17 57290105 57290105 T G SMG8 Missense_Mutation p.C641G 0.37 deleterious(0.01) probably_damaging(0.933) TCGA-OD-A75X-06 17 58144812 58144812 G A HEATR6 Silent p.G407G 0.48 TCGA-OD-A75X-06 17 61601727 61601727 G A KCNH6 Missense_Mutation p.D102N 0.50 tolerated(0.29) benign(0.202) TCGA-OD-A75X-06 17 61619602 61619602 G A KCNH6 Missense_Mutation p.G652E 0.39 deleterious(0.05) possibly_damaging(0.724) TCGA-OD-A75X-06 17 61988214 61988214 G A CSHL1 Silent p.V27V 0.40 TCGA-OD-A75X-06 17 62006463 62006463 G A CD79B 3'UTR 0.54 TCGA-OD-A75X-06 17 62859232 62859232 G A LRRC37A3 Intron 0.49 TCGA-OD-A75X-06 17 66391313 66391313 C T ARSG Silent p.G397G 0.39 TCGA-OD-A75X-06 17 72691365 72691365 G A CD300LF Missense_Mutation p.S248F 0.37 tolerated(0.08) benign(0.022) TCGA-OD-A75X-06 17 72937729 72937729 C T OTOP3 Silent p.F105F 0.46 TCGA-OD-A75X-06 17 7324546 7324546 C T SPEM1 Silent p.T184T 0.76 TCGA-OD-A75X-06 17 7365223 7365223 G A ZBTB4 3'UTR 0.92 TCGA-OD-A75X-06 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.85 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 17 76117011 76117011 C A TMC6 Intron 0.42 TCGA-OD-A75X-06 17 76183236 76183236 G A TK1 5'UTR 0.40 TCGA-OD-A75X-06 17 7623135 7623135 C T DNAH2 Missense_Mutation p.A28V 0.93 benign(0) TCGA-OD-A75X-06 17 7707643 7707643 C T DNAH2 Silent p.I3014I 0.77 TCGA-OD-A75X-06 17 78085843 78085843 C T GAA Silent p.S566S 0.40 TCGA-OD-A75X-06 17 78403762 78403762 C T ENDOV Intron 0.64 TCGA-OD-A75X-06 17 79181018 79181018 G A AZI1 Silent p.F98F 0.34 TCGA-OD-A75X-06 17 79514225 79514225 G A C17orf70 Missense_Mutation p.P628L 0.50 tolerated(0.14) possibly_damaging(0.687) TCGA-OD-A75X-06 17 8784239 8784239 G A PIK3R5 Silent p.I826I 0.81 TCGA-OD-A75X-06 17 9680577 9680577 C T DHRS7C Silent p.R169R 0.44 TCGA-OD-A75X-06 18 13387740 13387740 C T LDLRAD4 Nonsense_Mutation p.Q7* 0.43 TCGA-OD-A75X-06 18 14763884 14763884 G A ANKRD30B Silent p.L340L 0.44 TCGA-OD-A75X-06 18 14852198 14852198 G A ANKRD30B Missense_Mutation p.E1300K 0.47 deleterious(0.03) benign(0.201) TCGA-OD-A75X-06 18 28588091 28588091 G A DSC3 Silent p.I518I 0.47 TCGA-OD-A75X-06 18 28672105 28672105 C T DSC2 Missense_Mutation p.E105K 0.46 tolerated(0.19) probably_damaging(0.97) TCGA-OD-A75X-06 18 28713941 28713941 C T DSC1 Missense_Mutation p.D677N 0.35 tolerated(0.51) benign(0) TCGA-OD-A75X-06 18 28723666 28723666 G A DSC1 Missense_Mutation p.S343L 0.34 tolerated(0.06) possibly_damaging(0.742) TCGA-OD-A75X-06 18 28968918 28968918 G A DSG4 Missense_Mutation p.D152N 0.40 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 18 28972152 28972152 C T DSG4 Missense_Mutation p.S285L 0.39 deleterious(0) possibly_damaging(0.718) TCGA-OD-A75X-06 18 29101160 29101160 C T DSG2 Silent p.F159F 0.41 TCGA-OD-A75X-06 18 29340393 29340393 G A SLC25A52 Nonsense_Mutation p.R88* 0.47 TCGA-OD-A75X-06 18 3141982 3141982 G A MYOM1 Silent p.P660P 0.40 TCGA-OD-A75X-06 18 34854307 34854307 G A CELF4 Silent p.I256I 0.40 TCGA-OD-A75X-06 18 40503664 40503664 G A RIT2 Missense_Mutation p.S100F 0.46 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 18 42532485 42532485 G A SETBP1 Missense_Mutation p.M1060I 0.38 tolerated(0.31) probably_damaging(0.964) TCGA-OD-A75X-06 18 43664156 43664156 A G ATP5A1 3'UTR 0.35 TCGA-OD-A75X-06 18 45567078 45567078 C T ZBTB7C Missense_Mutation p.G134E 0.46 tolerated(0.63) benign(0) TCGA-OD-A75X-06 18 46812894 46812894 G T DYM Missense_Mutation p.L286M 0.46 deleterious(0.04) possibly_damaging(0.801) TCGA-OD-A75X-06 18 46858341 46858341 A - DYM Frame_Shift_Del p.L219Yfs*35 0.30 TCGA-OD-A75X-06 18 47367742 47367742 C T MYO5B Missense_Mutation p.G1565E 0.41 deleterious(0) probably_damaging(0.95) TCGA-OD-A75X-06 18 50936947 50936947 C T DCC Nonsense_Mutation p.R1021* 0.75 TCGA-OD-A75X-06 18 54363643 54363643 G T WDR7 Missense_Mutation p.V510F 0.69 deleterious(0) probably_damaging(0.974) TCGA-OD-A75X-06 18 54446734 54446734 C T WDR7 Missense_Mutation p.P1007L 0.81 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 18 61449714 61449714 C T SERPINB7 Silent p.F36F 0.84 TCGA-OD-A75X-06 18 76753933 76753933 C T SALL3 Missense_Mutation p.P648S 0.86 deleterious(0.04) possibly_damaging(0.854) TCGA-OD-A75X-06 18 9258458 9258458 C T ANKRD12 Silent p.I1731I 0.42 TCGA-OD-A75X-06 19 10080284 10080284 C T COL5A3 Silent p.G1355G 0.18 TCGA-OD-A75X-06 19 11032447 11032447 G A CARM1 3'UTR 0.41 TCGA-OD-A75X-06 19 11032448 11032448 G A CARM1 3'UTR 0.40 TCGA-OD-A75X-06 19 11569355 11569355 G A ELAVL3 Silent p.T135T 0.37 TCGA-OD-A75X-06 19 12848316 12848316 C T ASNA1 5'UTR 0.38 TCGA-OD-A75X-06 19 14077481 14077481 G A RFX1 Silent p.I605I 0.51 TCGA-OD-A75X-06 19 14591413 14591413 A C GIPC1 Missense_Mutation p.F156V 0.52 deleterious(0) possibly_damaging(0.908) TCGA-OD-A75X-06 19 14706128 14706128 G A CLEC17A Splice_Site p.X149_splice 0.42 TCGA-OD-A75X-06 19 14857767 14857767 G A EMR2 Missense_Mutation p.L678F 0.53 deleterious(0.01) probably_damaging(0.942) TCGA-OD-A75X-06 19 14992139 14992139 G A OR7A17 Missense_Mutation p.S10L 0.34 tolerated_low_confidence(0.12) benign(0.011) TCGA-OD-A75X-06 19 15052817 15052817 G A OR7C2 Missense_Mutation p.E173K 0.42 tolerated_low_confidence(0.09) benign(0.075) TCGA-OD-A75X-06 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.40 TCGA-OD-A75X-06 19 15740003 15740003 G A CYP4F8 Intron 0.30 TCGA-OD-A75X-06 19 17108134 17108134 C T CPAMD8 Silent p.R341R 0.31 TCGA-OD-A75X-06 19 18368599 18368599 G A KIAA1683 Silent p.T1165T 0.42 TCGA-OD-A75X-06 19 18376202 18376202 C T KIAA1683 Missense_Mutation p.M716I 0.44 deleterious(0.01) benign(0.005) TCGA-OD-A75X-06 19 19656040 19656040 C T CILP2 Missense_Mutation p.H896Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 19 20116763 20116763 G A ZNF682 3'UTR 0.42 TCGA-OD-A75X-06 19 2151352 2151352 T A AP3D1 5'UTR 0.42 TCGA-OD-A75X-06 19 22363276 22363276 G A ZNF676 Missense_Mutation p.H415Y 0.43 deleterious(0.03) probably_damaging(0.984) TCGA-OD-A75X-06 19 22574844 22574844 C T ZNF98 Missense_Mutation p.R398K 0.28 tolerated(0.33) benign(0.069) TCGA-OD-A75X-06 19 22941624 22941624 G A ZNF99 Missense_Mutation p.H363Y 0.47 deleterious(0.01) benign(0.25) TCGA-OD-A75X-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.54 tolerated(0.44) benign(0.023) TCGA-OD-A75X-06 19 30936469 30936469 G A ZNF536 Missense_Mutation p.G667D 0.50 tolerated(0.09) benign(0.093) TCGA-OD-A75X-06 19 33592450 33592450 C T GPATCH1 Silent p.S350S 0.37 TCGA-OD-A75X-06 19 3492320 3492320 G A DOHH Missense_Mutation p.R177C 0.62 deleterious(0.01) probably_damaging(0.988) TCGA-OD-A75X-06 19 3492321 3492321 G A DOHH Silent p.Y176Y 0.62 TCGA-OD-A75X-06 19 35823575 35823575 G A CD22 Missense_Mutation p.E54K 0.45 tolerated(0.35) benign(0.005) TCGA-OD-A75X-06 19 35849909 35849909 C T FFAR3 Silent p.F39F 0.22 TCGA-OD-A75X-06 19 36590396 36590396 C T WDR62 Silent p.P872P 0.44 TCGA-OD-A75X-06 19 36831434 36831434 C G ZFP14 Missense_Mutation p.A432P 0.45 deleterious(0) probably_damaging(0.991) TCGA-OD-A75X-06 19 38167254 38167254 C T ZNF781 Intron 0.25 TCGA-OD-A75X-06 19 38314532 38314532 G A CTD-2554C21.2 RNA 0.62 TCGA-OD-A75X-06 19 38799698 38799698 C T YIF1B Splice_Site p.X135_splice 0.29 TCGA-OD-A75X-06 19 3980661 3980661 G A EEF2 Silent p.S399S 0.39 TCGA-OD-A75X-06 19 39819094 39819094 G A GMFG 3'UTR 0.43 TCGA-OD-A75X-06 19 39963692 39963692 C T SUPT5H Silent p.A732A 0.36 TCGA-OD-A75X-06 19 40421497 40421497 G A FCGBP Silent p.L808L 0.47 TCGA-OD-A75X-06 19 40947745 40947745 G A SERTAD3 Silent p.P81P 0.52 TCGA-OD-A75X-06 19 40947746 40947746 G A SERTAD3 Missense_Mutation p.P81L 0.52 tolerated(0.39) probably_damaging(0.996) TCGA-OD-A75X-06 19 42828940 42828940 C T TMEM145 Missense_Mutation p.R485W 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-OD-A75X-06 19 43372166 43372166 G A PSG1 3'UTR 0.46 TCGA-OD-A75X-06 19 43383818 43383818 C T PSG1 5'UTR 0.34 TCGA-OD-A75X-06 19 43383819 43383819 C T PSG1 5'UTR 0.30 TCGA-OD-A75X-06 19 43683098 43683098 G A PSG5 Intron 0.34 TCGA-OD-A75X-06 19 43683099 43683099 G A PSG5 Intron 0.34 TCGA-OD-A75X-06 19 43702403 43702403 G A PSG4 Missense_Mutation p.S152F 0.43 deleterious(0) probably_damaging(0.995) TCGA-OD-A75X-06 19 44099573 44099573 G A IRGQ Intron 0.59 TCGA-OD-A75X-06 19 44536709 44536709 C T ZNF222 Silent p.F334F 0.38 TCGA-OD-A75X-06 19 44635578 44635578 C T ZNF225 Missense_Mutation p.H271Y 0.42 tolerated(0.74) benign(0.196) TCGA-OD-A75X-06 19 45322372 45322372 G A BCAM Missense_Mutation p.G466R 0.48 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 19 45885983 45885983 G A PPP1R13L Silent p.D750D 0.40 TCGA-OD-A75X-06 19 46275920 46275920 C T DMPK Silent p.S451S 0.32 TCGA-OD-A75X-06 19 46733596 46733596 G A IGFL1 Missense_Mutation p.D49N 0.47 tolerated(0.74) benign(0.037) TCGA-OD-A75X-06 19 47823172 47823172 C T C5AR1 Silent p.V46V 0.41 TCGA-OD-A75X-06 19 47910346 47910346 G A MEIS3 Silent p.S374S 0.41 TCGA-OD-A75X-06 19 49132706 49132706 C T SPHK2 Silent p.S547S 0.47 TCGA-OD-A75X-06 19 49519937 49519937 C T LHB Missense_Mutation p.G17E 0.35 tolerated(0.15) benign(0.008) TCGA-OD-A75X-06 19 50161585 50161585 C T SCAF1 Missense_Mutation p.P1290S 0.35 unknown(0) TCGA-OD-A75X-06 19 50827043 50827043 G A KCNC3 Silent p.I389I 0.36 TCGA-OD-A75X-06 19 51329169 51329169 G A KLK15 Silent p.I218I 0.53 TCGA-OD-A75X-06 19 52249975 52249975 C T FPR1 Nonsense_Mutation p.W91* 0.38 TCGA-OD-A75X-06 19 52954904 52954904 G A ZNF578 5'Flank 0.33 TCGA-OD-A75X-06 19 53644336 53644336 G A ZNF347 Missense_Mutation p.S583L 0.41 deleterious(0.04) probably_damaging(0.922) TCGA-OD-A75X-06 19 53678728 53678728 A G ZNF665 Silent p.L38L 0.50 TCGA-OD-A75X-06 19 53885228 53885228 C T ZNF525 Missense_Mutation p.P466S 0.45 deleterious(0.03) benign(0.136) TCGA-OD-A75X-06 19 53885229 53885229 C T ZNF525 Missense_Mutation p.P466L 0.41 deleterious(0.02) benign(0.355) TCGA-OD-A75X-06 19 55106194 55106194 G A LILRA1 Silent p.V45V 0.45 TCGA-OD-A75X-06 19 55320288 55320288 G A KIR2DL4 Missense_Mutation p.G219E 0.91 tolerated(0.11) possibly_damaging(0.601) TCGA-OD-A75X-06 19 55365418 55365418 G A KIR3DL2 Missense_Mutation p.G191E 0.55 tolerated(0.06) probably_damaging(0.998) TCGA-OD-A75X-06 19 55689594 55689594 C T SYT5 Silent p.V74V 0.30 TCGA-OD-A75X-06 19 56297162 56297162 G A NLRP11 Silent p.I977I 0.45 TCGA-OD-A75X-06 19 56423667 56423667 C T NLRP13 Missense_Mutation p.E506K 0.38 tolerated(0.42) benign(0.004) TCGA-OD-A75X-06 19 5668435 5668435 C T SAFB 3'Flank 0.62 TCGA-OD-A75X-06 19 56736206 56736206 A G ZSCAN5A Silent p.H70H 0.30 TCGA-OD-A75X-06 19 57670611 57670611 G A DUXA Silent p.F72F 0.44 TCGA-OD-A75X-06 19 58153671 58153671 C T ZNF211 3'UTR 0.46 TCGA-OD-A75X-06 19 582303 582303 C T BSG Intron 0.43 TCGA-OD-A75X-06 19 5843575 5843575 C T FUT3 3'UTR 0.40 TCGA-OD-A75X-06 19 6481703 6481703 C T DENND1C Missense_Mutation p.E2K 0.38 deleterious(0.02) benign(0.019) TCGA-OD-A75X-06 19 6496198 6496198 C G TUBB4A Silent p.G104G 0.40 TCGA-OD-A75X-06 19 6697724 6697724 C T C3 Missense_Mutation p.R841Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 19 6719397 6719397 G A C3 Missense_Mutation p.P31L 0.38 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 19 7527133 7527133 C T ARHGEF18 Silent p.L662L 0.47 TCGA-OD-A75X-06 19 805537 805537 T A PTBP1 Missense_Mutation p.F313Y 0.36 tolerated(0.1) benign(0.397) TCGA-OD-A75X-06 19 8921836 8921836 A G ZNF558 3'UTR 0.35 TCGA-OD-A75X-06 19 9019631 9019631 G A MUC16 Silent p.F12505F 0.37 TCGA-OD-A75X-06 19 9057312 9057312 G A MUC16 Missense_Mutation p.S10045F 0.31 benign(0.293) TCGA-OD-A75X-06 19 9059304 9059304 G A MUC16 Missense_Mutation p.T9381I 0.40 unknown(0) TCGA-OD-A75X-06 19 9061119 9061119 G A MUC16 Missense_Mutation p.P8776L 0.42 unknown(0) TCGA-OD-A75X-06 19 9066367 9066367 C T MUC16 Missense_Mutation p.E7027K 0.41 unknown(0) TCGA-OD-A75X-06 19 9067508 9067508 C T MUC16 Silent p.R6646R 0.43 TCGA-OD-A75X-06 19 9067818 9067818 G A MUC16 Missense_Mutation p.S6543L 0.50 unknown(0) TCGA-OD-A75X-06 19 9070509 9070509 G A MUC16 Missense_Mutation p.S5646F 0.37 unknown(0) TCGA-OD-A75X-06 19 9075646 9075646 G A MUC16 Missense_Mutation p.P3934S 0.31 unknown(0) TCGA-OD-A75X-06 19 9296468 9296468 G A OR7D2 Missense_Mutation p.G4E 0.44 tolerated_low_confidence(0.76) benign(0.001) TCGA-OD-A75X-06 1 100346234 100346234 C T AGL Silent p.Y594Y 0.38 TCGA-OD-A75X-06 1 101004699 101004699 C T GPR88 Silent p.F59F 0.32 TCGA-OD-A75X-06 1 103471423 103471423 G A COL11A1 Missense_Mutation p.P606S 0.41 unknown(0) TCGA-OD-A75X-06 1 104160207 104160207 C A AMY2A Missense_Mutation p.P49T 0.46 deleterious(0) probably_damaging(0.916) TCGA-OD-A75X-06 1 10510203 10510203 C T CORT 5'UTR 0.36 TCGA-OD-A75X-06 1 110051176 110051176 T C AMIGO1 Missense_Mutation p.N120S 0.42 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 1 1115515 1115515 C T TTLL10 Silent p.L101L 0.32 TCGA-OD-A75X-06 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.45 tolerated(0.08) probably_damaging(0.996) TCGA-OD-A75X-06 1 114255996 114255996 G C PHTF1 Missense_Mutation p.H230D 0.42 tolerated(0.87) benign(0) TCGA-OD-A75X-06 1 114256077 114256077 G A PHTF1 Intron 0.50 TCGA-OD-A75X-06 1 114510562 114510562 C T HIPK1 Silent p.V852V 0.37 TCGA-OD-A75X-06 1 115524003 115524003 T C SYCP1 Missense_Mutation p.L810S 0.48 tolerated(0.29) benign(0.094) TCGA-OD-A75X-06 1 115576117 115576117 C T TSHB Missense_Mutation p.T45I 0.34 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 11561564 11561564 C T PTCHD2 Missense_Mutation p.P172L 0.54 tolerated_low_confidence(0.06) benign(0.001) TCGA-OD-A75X-06 1 11561565 11561565 C T PTCHD2 Silent p.P172P 0.53 TCGA-OD-A75X-06 1 119474366 119474366 C T TBX15 5'UTR 0.44 TCGA-OD-A75X-06 1 119683154 119683154 G A WARS2 Intron 0.32 TCGA-OD-A75X-06 1 119965159 119965159 G A HSD3B2 Nonsense_Mutation p.W345* 0.38 TCGA-OD-A75X-06 1 12409257 12409257 C T VPS13D Missense_Mutation p.S3086L 0.44 benign(0.016) TCGA-OD-A75X-06 1 12854213 12854213 C T PRAMEF1 Missense_Mutation p.P146L 0.34 deleterious(0) possibly_damaging(0.507) TCGA-OD-A75X-06 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.22 tolerated(0.05) benign(0.028) TCGA-OD-A75X-06 1 12954493 12954493 G A PRAMEF10 Missense_Mutation p.L264F 0.30 deleterious(0.01) possibly_damaging(0.66) TCGA-OD-A75X-06 1 145290442 145290442 C T NOTCH2NL 3'Flank 0.05 TCGA-OD-A75X-06 1 145416970 145416970 G A HFE2 3'UTR 0.50 TCGA-OD-A75X-06 1 145473962 145473962 G A ANKRD34A Missense_Mutation p.D212N 0.41 tolerated(0.44) benign(0.122) TCGA-OD-A75X-06 1 146759368 146759368 C T CHD1L Missense_Mutation p.S759F 0.40 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 1 148004572 148004572 C T NBPF14 Silent p.Q920Q 0.11 TCGA-OD-A75X-06 1 151148939 151148939 G A VPS72 3'UTR 0.53 TCGA-OD-A75X-06 1 151259006 151259006 C T ZNF687 Missense_Mutation p.S80F 0.42 deleterious(0) possibly_damaging(0.701) TCGA-OD-A75X-06 1 151338846 151338846 G A SELENBP1 Missense_Mutation p.P250S 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-OD-A75X-06 1 151789199 151789199 C T RORC Missense_Mutation p.R80Q 0.50 deleterious(0.02) probably_damaging(1) TCGA-OD-A75X-06 1 152058985 152058985 C T TCHHL1 Silent p.R391R 0.46 TCGA-OD-A75X-06 1 153276366 153276366 G A PGLYRP3 Silent p.L166L 0.42 TCGA-OD-A75X-06 1 153932517 153932517 G A SLC39A1 3'UTR 0.60 TCGA-OD-A75X-06 1 155257005 155257005 C T HCN3 Missense_Mutation p.R507W 0.46 deleterious(0) probably_damaging(0.989) TCGA-OD-A75X-06 1 155449108 155449108 G A ASH1L Missense_Mutation p.P1185S 0.49 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-OD-A75X-06 1 155697499 155697499 C T DAP3 Silent p.F191F 0.41 TCGA-OD-A75X-06 1 155922468 155922468 G A ARHGEF2 Silent p.S645S 0.36 TCGA-OD-A75X-06 1 156213532 156213532 T C PAQR6 3'UTR 0.33 TCGA-OD-A75X-06 1 156222768 156222768 G A SMG5 Silent p.L868L 0.41 TCGA-OD-A75X-06 1 157516962 157516962 G A FCRL5 Silent p.F26F 0.39 TCGA-OD-A75X-06 1 157557280 157557280 G A FCRL4 Silent p.S211S 0.48 TCGA-OD-A75X-06 1 157772254 157772254 T A FCRL1 Missense_Mutation p.R174W 0.45 deleterious(0) probably_damaging(0.986) TCGA-OD-A75X-06 1 158323824 158323824 G A CD1E Missense_Mutation p.E16K 0.37 tolerated(0.76) benign(0.011) TCGA-OD-A75X-06 1 158390503 158390503 C T OR10K2 Missense_Mutation p.D52N 0.44 tolerated(0.06) possibly_damaging(0.451) TCGA-OD-A75X-06 1 158435445 158435445 C T OR10K1 Silent p.L32L 0.40 TCGA-OD-A75X-06 1 158576582 158576582 G A OR10Z1 Missense_Mutation p.M118I 0.43 deleterious(0.01) probably_damaging(0.937) TCGA-OD-A75X-06 1 158637763 158637763 C T SPTA1 Silent p.Q641Q 0.39 TCGA-OD-A75X-06 1 158735842 158735842 A T OR6N1 Missense_Mutation p.F211I 0.38 tolerated(0.21) probably_damaging(0.983) TCGA-OD-A75X-06 1 159684231 159684231 A G CRP Silent p.H15H 0.58 TCGA-OD-A75X-06 1 159779228 159779228 G A FCRL6 Missense_Mutation p.G214E 0.43 tolerated(0.8) probably_damaging(0.968) TCGA-OD-A75X-06 1 159897662 159897662 C T IGSF9 Silent p.V1082V 0.36 TCGA-OD-A75X-06 1 159923229 159923229 G A SLAMF9 Silent p.S87S 0.47 TCGA-OD-A75X-06 1 160011957 160011957 G A KCNJ10 Silent p.S122S 0.36 TCGA-OD-A75X-06 1 160061618 160061618 G A IGSF8 Missense_Mutation p.R613W 0.39 deleterious(0) probably_damaging(0.993) TCGA-OD-A75X-06 1 160061620 160061620 T A IGSF8 Missense_Mutation p.K612I 0.40 tolerated(0.14) probably_damaging(0.994) TCGA-OD-A75X-06 1 160261901 160261901 G A COPA Silent p.L1025L 0.41 TCGA-OD-A75X-06 1 160788098 160788098 G A LY9 Missense_Mutation p.R478Q 0.47 tolerated(1) benign(0) TCGA-OD-A75X-06 1 161496362 161496362 C T HSPA6 Silent p.I638I 0.33 TCGA-OD-A75X-06 1 161989809 161989809 G A OLFML2B Missense_Mutation p.S113L 0.48 tolerated(0.09) benign(0.155) TCGA-OD-A75X-06 1 16353034 16353034 C T CLCNKA Missense_Mutation p.P168S 0.57 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 1 16558656 16558656 C A RSG1 Missense_Mutation p.A222S 0.45 tolerated(0.27) benign(0.226) TCGA-OD-A75X-06 1 165638528 165638528 G A ALDH9A1 Missense_Mutation p.L364F 0.38 deleterious(0.01) benign(0.112) TCGA-OD-A75X-06 1 167742490 167742490 C T MPZL1 Missense_Mutation p.P164S 0.40 tolerated(0.43) benign(0.219) TCGA-OD-A75X-06 1 167793728 167793728 G A ADCY10 Silent p.L1346L 0.43 TCGA-OD-A75X-06 1 16945385 16945385 G A RP5-1182A14.5 3'Flank 0.13 TCGA-OD-A75X-06 1 169511839 169511839 G A F5 Missense_Mutation p.P830L 0.43 tolerated(0.06) benign(0.046) TCGA-OD-A75X-06 1 169529894 169529894 G A F5 Missense_Mutation p.H162Y 0.43 deleterious(0.04) possibly_damaging(0.505) TCGA-OD-A75X-06 1 170965688 170965688 G A MROH9 Missense_Mutation p.G460R 0.34 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 171083269 171083269 C T FMO3 Missense_Mutation p.T317I 0.49 deleterious(0.02) probably_damaging(0.931) TCGA-OD-A75X-06 1 172357894 172357894 G A DNM3 Missense_Mutation p.G823R 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-OD-A75X-06 1 17313584 17313584 C G ATP13A2 Missense_Mutation p.G1014R 0.49 tolerated(0.28) benign(0.393) TCGA-OD-A75X-06 1 175087713 175087713 A T TNN Missense_Mutation p.Q801H 0.31 deleterious(0.05) possibly_damaging(0.489) TCGA-OD-A75X-06 1 179504007 179504007 C T AXDND1 Nonsense_Mutation p.Q981* 0.41 TCGA-OD-A75X-06 1 179604915 179604915 C T TDRD5 Silent p.S471S 0.42 TCGA-OD-A75X-06 1 181700323 181700323 G A CACNA1E Silent p.R751R 0.36 TCGA-OD-A75X-06 1 182615927 182615927 G A RGS8 Silent p.F180F 0.45 TCGA-OD-A75X-06 1 186919851 186919851 G A PLA2G4A Missense_Mutation p.E443K 0.38 tolerated(0.92) benign(0.003) TCGA-OD-A75X-06 1 19486690 19486690 G A UBR4 Missense_Mutation p.A1831V 0.52 possibly_damaging(0.632) TCGA-OD-A75X-06 1 196963290 196963290 T C CFHR5 Silent p.L171L 0.47 TCGA-OD-A75X-06 1 200017327 200017327 G A NR5A2 Missense_Mutation p.G164E 0.41 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 201058480 201058480 T C CACNA1S Missense_Mutation p.N269S 0.41 deleterious(0.01) possibly_damaging(0.528) TCGA-OD-A75X-06 1 201355545 201355545 C T LAD1 Missense_Mutation p.G315E 0.47 tolerated(1) benign(0.002) TCGA-OD-A75X-06 1 201868521 201868521 G A LMOD1 Silent p.P540P 0.60 TCGA-OD-A75X-06 1 203453155 203453155 G T PRELP Missense_Mutation p.R281S 0.40 tolerated(0.39) benign(0.017) TCGA-OD-A75X-06 1 204409340 204409340 A G PIK3C2B Missense_Mutation p.F1120S 0.47 deleterious(0.04) benign(0.027) TCGA-OD-A75X-06 1 207135887 207135887 G A FCAMR Missense_Mutation p.S108L 0.36 deleterious(0) benign(0.016) TCGA-OD-A75X-06 1 207647184 207647184 C T CR2 Missense_Mutation p.P732S 0.41 tolerated(0.22) possibly_damaging(0.787) TCGA-OD-A75X-06 1 211093123 211093123 C T KCNH1 Missense_Mutation p.E441K 0.44 tolerated(0.17) benign(0.081) TCGA-OD-A75X-06 1 212273911 212273911 C T DTL Missense_Mutation p.P527S 0.35 deleterious(0.01) possibly_damaging(0.885) TCGA-OD-A75X-06 1 212273912 212273912 C T DTL Missense_Mutation p.P527L 0.37 deleterious(0) possibly_damaging(0.892) TCGA-OD-A75X-06 1 213134661 213134661 G A VASH2 Intron 0.36 TCGA-OD-A75X-06 1 213414585 213414585 C T RPS6KC1 Missense_Mutation p.S589F 0.45 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 1 22172955 22172955 G A HSPG2 Missense_Mutation p.P2768S 0.42 probably_damaging(0.99) TCGA-OD-A75X-06 1 22332274 22332274 C T CELA3A Missense_Mutation p.S116L 0.42 tolerated(0.52) benign(0.009) TCGA-OD-A75X-06 1 224473770 224473770 G A NVL Silent p.L619L 0.45 TCGA-OD-A75X-06 1 227081808 227081808 C T PSEN2 Silent p.C391C 0.47 TCGA-OD-A75X-06 1 228111913 228111913 C T WNT9A Missense_Mutation p.E181K 0.42 tolerated(0.61) benign(0.056) TCGA-OD-A75X-06 1 22817077 22817077 T C ZBTB40 Silent p.A212A 0.44 TCGA-OD-A75X-06 1 228461502 228461502 C T OBSCN Silent p.C2098C 0.26 TCGA-OD-A75X-06 1 233394181 233394181 C T PCNXL2 Missense_Mutation p.G476E 0.45 tolerated_low_confidence(0.29) benign(0.001) TCGA-OD-A75X-06 1 233490631 233490631 C T MLK4 Silent p.L395L 0.44 TCGA-OD-A75X-06 1 234452443 234452443 G A SLC35F3 Silent p.V308V 0.43 TCGA-OD-A75X-06 1 237947150 237947150 G A RYR2 Silent p.R4046R 0.35 TCGA-OD-A75X-06 1 237947151 237947151 G A RYR2 Missense_Mutation p.D4047N 0.36 probably_damaging(0.979) TCGA-OD-A75X-06 1 240371668 240371668 C T FMN2 Missense_Mutation p.P1186S 0.37 unknown(0) TCGA-OD-A75X-06 1 245704205 245704205 C T KIF26B Silent p.L435L 0.43 TCGA-OD-A75X-06 1 245912889 245912889 G A SMYD3 Silent p.C421C 0.06 TCGA-OD-A75X-06 1 247051698 247051698 G A AHCTF1 Missense_Mutation p.H765Y 0.42 deleterious(0) possibly_damaging(0.88) TCGA-OD-A75X-06 1 247769160 247769160 G A OR2G3 Silent p.T91T 0.83 TCGA-OD-A75X-06 1 248202348 248202348 G A OR2L2 Missense_Mutation p.R260H 0.84 tolerated(0.12) benign(0.022) TCGA-OD-A75X-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.71 deleterious(0.03) benign(0.232) TCGA-OD-A75X-06 1 248756846 248756846 G A OR2T10 Missense_Mutation p.S75F 0.93 tolerated(0.11) benign(0.077) TCGA-OD-A75X-06 1 26737876 26737876 G A LIN28A Splice_Site p.X11_splice 0.33 TCGA-OD-A75X-06 1 27121213 27121213 C T PIGV Missense_Mutation p.P230S 0.41 tolerated(0.61) benign(0.102) TCGA-OD-A75X-06 1 27333152 27333152 C T FAM46B Nonsense_Mutation p.W187* 0.42 TCGA-OD-A75X-06 1 29040709 29040709 C T GMEB1 Silent p.L382L 0.45 TCGA-OD-A75X-06 1 32193847 32193847 A T BAI2 Missense_Mutation p.L1484H 0.48 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 1 33149517 33149517 A G RBBP4 3'UTR 0.50 TCGA-OD-A75X-06 1 34006766 34006766 C T CSMD2 Missense_Mutation p.D2997N 0.40 tolerated(1) possibly_damaging(0.812) TCGA-OD-A75X-06 1 34191094 34191094 C T CSMD2 Missense_Mutation p.G811R 0.42 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 34204825 34204825 G A CSMD2 Missense_Mutation p.L722F 0.49 deleterious(0) possibly_damaging(0.477) TCGA-OD-A75X-06 1 36557639 36557639 C T ADPRHL2 Silent p.L215L 0.44 TCGA-OD-A75X-06 1 36563663 36563663 C T COL8A2 Missense_Mutation p.G540D 0.38 tolerated(0.09) probably_damaging(0.998) TCGA-OD-A75X-06 1 36564446 36564446 C T COL8A2 Missense_Mutation p.G279D 0.44 deleterious(0.01) unknown(0) TCGA-OD-A75X-06 1 37949106 37949106 C T ZC3H12A Missense_Mutation p.P565L 0.47 deleterious(0.03) possibly_damaging(0.556) TCGA-OD-A75X-06 1 38227207 38227207 G T EPHA10 Nonsense_Mutation p.C240* 0.43 TCGA-OD-A75X-06 1 40319575 40319575 C T TRIT1 Intron 0.45 TCGA-OD-A75X-06 1 40656453 40656453 C T RLF Silent p.F134F 0.47 TCGA-OD-A75X-06 1 40771393 40771393 C T COL9A2 Silent p.G367G 0.38 TCGA-OD-A75X-06 1 42647663 42647663 G A FOXJ3 Missense_Mutation p.P560S 0.41 tolerated(0.15) benign(0) TCGA-OD-A75X-06 1 43047117 43047117 A G CCDC30 Silent p.E384E 0.41 TCGA-OD-A75X-06 1 45798487 45798487 G C MUTYH Missense_Mutation p.A172G 0.20 deleterious(0) possibly_damaging(0.461) TCGA-OD-A75X-06 1 4772483 4772483 C T AJAP1 Missense_Mutation p.P185S 0.76 tolerated(0.08) probably_damaging(0.982) TCGA-OD-A75X-06 1 51061849 51061849 G A FAF1 Nonsense_Mutation p.R262* 0.61 TCGA-OD-A75X-06 1 52344001 52344001 C T NRD1 Missense_Mutation p.S96N 0.39 tolerated_low_confidence(0.51) benign(0.213) TCGA-OD-A75X-06 1 52486562 52486562 C T TXNDC12 3'UTR 0.48 TCGA-OD-A75X-06 1 53608038 53608038 G A SLC1A7 Silent p.I28I 0.57 TCGA-OD-A75X-06 1 55279598 55279598 C T C1orf177 Missense_Mutation p.P292S 0.32 tolerated(0.05) possibly_damaging(0.586) TCGA-OD-A75X-06 1 57209892 57209892 C T C1orf168 Missense_Mutation p.G479R 0.40 tolerated(0.51) benign(0.056) TCGA-OD-A75X-06 1 60456306 60456306 G A C1orf87 3'UTR 0.46 TCGA-OD-A75X-06 1 65141605 65141605 C T CACHD1 Missense_Mutation p.P921S 0.35 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 1 65310460 65310460 G A JAK1 Missense_Mutation p.P743L 0.49 deleterious(0.03) probably_damaging(0.971) TCGA-OD-A75X-06 1 6589100 6589100 C T NOL9 Silent p.G593G 0.34 TCGA-OD-A75X-06 1 67428787 67428787 C T MIER1 Missense_Mutation p.S239F 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-OD-A75X-06 1 68944879 68944879 G A DEPDC1 Missense_Mutation p.S687F 0.47 tolerated(0.07) possibly_damaging(0.498) TCGA-OD-A75X-06 1 70505181 70505181 G A LRRC7 Missense_Mutation p.G1187E 0.44 tolerated(0.25) probably_damaging(1) TCGA-OD-A75X-06 1 75037210 75037210 C T C1orf173 Missense_Mutation p.G1395E 0.44 tolerated(0.05) possibly_damaging(0.536) TCGA-OD-A75X-06 1 75037944 75037944 T A C1orf173 Missense_Mutation p.K1150N 0.40 tolerated(0.31) benign(0.15) TCGA-OD-A75X-06 1 75037945 75037945 T G C1orf173 Missense_Mutation p.K1150T 0.41 tolerated(0.48) benign(0.003) TCGA-OD-A75X-06 1 77093151 77093151 C T ST6GALNAC3 Missense_Mutation p.S213L 0.38 benign(0.434) TCGA-OD-A75X-06 1 78398944 78398944 G A NEXN Intron 0.32 TCGA-OD-A75X-06 1 8415576 8415576 A G RERE Missense_Mutation p.S1524P 0.51 unknown(0) TCGA-OD-A75X-06 1 85573801 85573801 C T WDR63 Missense_Mutation p.P547S 0.43 deleterious(0.04) benign(0.117) TCGA-OD-A75X-06 1 86375685 86375685 C T COL24A1 Missense_Mutation p.G873E 0.41 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 86847984 86847984 G A ODF2L Silent p.L189L 0.18 TCGA-OD-A75X-06 1 86959202 86959202 C T CLCA1 Missense_Mutation p.P534S 0.44 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 1 8926471 8926471 G A ENO1 Silent p.F178F 0.46 TCGA-OD-A75X-06 1 91979528 91979528 C T CDC7 Silent p.V282V 0.37 TCGA-OD-A75X-06 1 95367312 95367312 A G CNN3 Silent p.I138I 0.29 TCGA-OD-A75X-06 20 10023882 10023882 C T ANKEF1 Silent p.F153F 0.37 TCGA-OD-A75X-06 20 10603512 10603512 C T SLX4IP Nonsense_Mutation p.Q238* 0.44 TCGA-OD-A75X-06 20 13029765 13029765 G A SPTLC3 Missense_Mutation p.R97K 0.50 tolerated(0.25) probably_damaging(0.996) TCGA-OD-A75X-06 20 1961530 1961530 A T PDYN Missense_Mutation p.F68L 0.48 tolerated(0.6) benign(0.005) TCGA-OD-A75X-06 20 20020266 20020266 A - CRNKL1 Frame_Shift_Del p.L672* 0.32 TCGA-OD-A75X-06 20 20037429 20037429 C T C20orf26 Silent p.I44I 0.38 TCGA-OD-A75X-06 20 2290832 2290832 C T TGM3 Missense_Mutation p.P64S 0.35 deleterious(0.02) benign(0.354) TCGA-OD-A75X-06 20 25667189 25667189 G A ZNF337 5'UTR 0.65 TCGA-OD-A75X-06 20 2604977 2604977 C T TMC2 Silent p.F747F 0.44 TCGA-OD-A75X-06 20 2777928 2777928 C T CPXM1 Missense_Mutation p.V248M 0.36 deleterious(0) probably_damaging(0.988) TCGA-OD-A75X-06 20 3211214 3211214 G A SLC4A11 Silent p.F497F 0.51 TCGA-OD-A75X-06 20 33338002 33338002 G A NCOA6 Missense_Mutation p.P666S 0.46 benign(0.031) TCGA-OD-A75X-06 20 36779381 36779381 G A TGM2 Missense_Mutation p.S171L 0.41 deleterious(0.01) benign(0.129) TCGA-OD-A75X-06 20 36938934 36938934 C T BPI Missense_Mutation p.S143F 0.41 deleterious(0.05) possibly_damaging(0.634) TCGA-OD-A75X-06 20 37357136 37357136 C T SLC32A1 Silent p.L478L 0.51 TCGA-OD-A75X-06 20 40727112 40727112 G A PTPRT Silent p.F1265F 0.44 TCGA-OD-A75X-06 20 40770556 40770556 G A PTPRT Silent p.S923S 0.39 TCGA-OD-A75X-06 20 43058341 43058341 C T HNF4A 3'UTR 0.43 TCGA-OD-A75X-06 20 43251686 43251686 G A ADA Missense_Mutation p.H214Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 20 43251687 43251687 G A ADA Silent p.V213V 0.36 TCGA-OD-A75X-06 20 43851810 43851810 C T SEMG2 Missense_Mutation p.P513S 0.54 tolerated(0.11) unknown(0) TCGA-OD-A75X-06 20 49211993 49211993 C T FAM65C Missense_Mutation p.E651K 0.48 deleterious(0.01) possibly_damaging(0.856) TCGA-OD-A75X-06 20 49509856 49509856 G - ADNP Frame_Shift_Del p.F465Lfs*13 0.30 TCGA-OD-A75X-06 20 55027362 55027362 C T CASS4 Missense_Mutation p.A377V 0.45 tolerated(0.39) benign(0.002) TCGA-OD-A75X-06 20 55904848 55904848 G A SPO11 5'UTR 0.30 TCGA-OD-A75X-06 20 6078218 6078218 C T FERMT1 Missense_Mutation p.E304K 0.39 deleterious(0.01) possibly_damaging(0.58) TCGA-OD-A75X-06 20 62199887 62199887 C T HELZ2 Silent p.K518K 0.52 TCGA-OD-A75X-06 20 8737811 8737811 G A PLCB1 Missense_Mutation p.S881N 0.32 tolerated(0.49) benign(0.011) TCGA-OD-A75X-06 20 9520184 9520184 G A PAK7 Silent p.L695L 0.45 TCGA-OD-A75X-06 21 11026821 11026821 G A BAGE2 RNA 0.42 TCGA-OD-A75X-06 21 11097598 11097598 C T BAGE2 RNA 0.09 TCGA-OD-A75X-06 21 31023498 31023498 G A GRIK1 Silent p.S298S 0.89 TCGA-OD-A75X-06 21 32513747 32513747 G A TIAM1 Missense_Mutation p.S1184L 0.79 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 21 34003369 34003369 G A SYNJ1 Missense_Mutation p.P1592L 0.85 deleterious_low_confidence(0.01) benign(0.127) TCGA-OD-A75X-06 21 34721728 34721728 C T IFNAR1 Missense_Mutation p.S341F 0.91 tolerated(0.07) benign(0.128) TCGA-OD-A75X-06 21 41719668 41719668 C T DSCAM Missense_Mutation p.G380E 0.86 tolerated(0.24) possibly_damaging(0.794) TCGA-OD-A75X-06 21 43161141 43161141 C T RIPK4 Missense_Mutation p.A738T 0.88 deleterious(0.02) benign(0.141) TCGA-OD-A75X-06 21 43413314 43413314 T C ZBTB21 Silent p.K297K 0.87 TCGA-OD-A75X-06 21 46020719 46020719 C T KRTAP10-7 Silent p.S66S 0.76 TCGA-OD-A75X-06 21 46074567 46074567 G C KRTAP12-4 5'UTR 0.77 TCGA-OD-A75X-06 21 47849990 47849990 G A PCNT Missense_Mutation p.S2586N 0.09 benign(0.005) TCGA-OD-A75X-06 22 17072013 17072013 G A CCT8L2 Silent p.L476L 0.26 TCGA-OD-A75X-06 22 17072794 17072794 G A CCT8L2 Missense_Mutation p.S216F 0.67 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 22 19048382 19048382 G A DGCR2 Intron 0.55 TCGA-OD-A75X-06 22 19396038 19396038 G A HIRA Missense_Mutation p.P60L 0.57 deleterious(0) probably_damaging(0.943) TCGA-OD-A75X-06 22 21188850 21188850 C T PI4KA Missense_Mutation p.G123S 0.31 tolerated(0.38) benign(0.103) TCGA-OD-A75X-06 22 21801143 21801143 C G HIC2 3'UTR 0.58 TCGA-OD-A75X-06 22 24210750 24210750 C T AP000350.10 Missense_Mutation p.S33F 0.45 deleterious(0) probably_damaging(0.978) TCGA-OD-A75X-06 22 25023485 25023485 C T GGT1 Silent p.Y369Y 0.42 TCGA-OD-A75X-06 22 26164451 26164451 G A MYO18B Missense_Mutation p.E190K 0.43 tolerated_low_confidence(0.58) benign(0.006) TCGA-OD-A75X-06 22 26273949 26273949 G A MYO18B Silent p.R1416R 0.23 TCGA-OD-A75X-06 22 26286821 26286821 C G MYO18B Missense_Mutation p.F1471L 0.53 tolerated(0.43) benign(0.005) TCGA-OD-A75X-06 22 26688565 26688565 C T SEZ6L Silent p.I96I 0.53 TCGA-OD-A75X-06 22 28194582 28194582 C T MN1 Silent p.S650S 0.50 TCGA-OD-A75X-06 22 29885295 29885295 G A NEFH Missense_Mutation p.E556K 0.66 deleterious(0.05) unknown(0) TCGA-OD-A75X-06 22 31330144 31330144 G A MORC2 Missense_Mutation p.S681F 0.23 tolerated_low_confidence(0.05) benign(0.004) TCGA-OD-A75X-06 22 31737367 31737367 C T PATZ1 Intron 0.28 TCGA-OD-A75X-06 22 31738934 31738934 C G PATZ1 Missense_Mutation p.L428F 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-OD-A75X-06 22 31738942 31738942 C T PATZ1 Missense_Mutation p.D426N 0.23 tolerated(0.06) probably_damaging(0.936) TCGA-OD-A75X-06 22 36623370 36623370 A T APOL2 3'UTR 0.26 TCGA-OD-A75X-06 22 36623372 36623372 A T APOL2 3'UTR 0.16 TCGA-OD-A75X-06 22 39357469 39357469 G A APOBEC3A Silent p.L84L 0.37 TCGA-OD-A75X-06 22 43010935 43010935 G A POLDIP3 5'UTR 0.50 TCGA-OD-A75X-06 22 45309780 45309780 G A PHF21B Silent p.P251P 0.28 TCGA-OD-A75X-06 22 50187788 50187788 G A BRD1 Silent p.L751L 0.31 TCGA-OD-A75X-06 22 50217205 50217205 C T BRD1 Missense_Mutation p.G254D 0.63 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 22 50217206 50217206 C T BRD1 Missense_Mutation p.G254S 0.63 deleterious(0.01) probably_damaging(0.951) TCGA-OD-A75X-06 22 50657167 50657167 G A TUBGCP6 Missense_Mutation p.P1596S 0.26 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 2 107041010 107041010 G A RGPD3 Missense_Mutation p.S1138F 0.57 deleterious(0) probably_damaging(0.989) TCGA-OD-A75X-06 2 107041553 107041553 T A RGPD3 Missense_Mutation p.K957M 0.20 deleterious(0.04) benign(0.285) TCGA-OD-A75X-06 2 107041554 107041554 T A RGPD3 Nonsense_Mutation p.K957* 0.20 TCGA-OD-A75X-06 2 108994768 108994768 G A SULT1C4 5'UTR 0.41 TCGA-OD-A75X-06 2 113786574 113786574 C T IL36B Missense_Mutation p.G68E 0.41 tolerated_low_confidence(0.27) benign(0.372) TCGA-OD-A75X-06 2 118753067 118753067 G A CCDC93 Silent p.F158F 0.49 TCGA-OD-A75X-06 2 120362840 120362840 G A PCDP1 Missense_Mutation p.E370K 0.42 deleterious(0.01) possibly_damaging(0.622) TCGA-OD-A75X-06 2 124999969 124999969 G T CNTNAP5 Missense_Mutation p.W127L 0.53 tolerated(0.21) benign(0.144) TCGA-OD-A75X-06 2 124999970 124999970 G A CNTNAP5 Nonsense_Mutation p.W127* 0.53 TCGA-OD-A75X-06 2 133402744 133402744 A G GPR39 Silent p.K309K 0.49 TCGA-OD-A75X-06 2 136567284 136567284 G A LCT Missense_Mutation p.S878F 0.44 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.37 TCGA-OD-A75X-06 2 142012201 142012201 G A LRP1B Missense_Mutation p.S118F 0.58 benign(0.004) TCGA-OD-A75X-06 2 160257130 160257130 G A BAZ2B Nonsense_Mutation p.R960* 0.34 TCGA-OD-A75X-06 2 16085834 16085834 C T MYCN Missense_Mutation p.P337L 0.36 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 2 16086021 16086021 C T MYCN Silent p.S399S 0.46 TCGA-OD-A75X-06 2 162273027 162273027 G A TBR1 Missense_Mutation p.D36N 0.47 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-OD-A75X-06 2 166237144 166237144 C T SCN2A Missense_Mutation p.L1451F 0.39 deleterious(0.05) benign(0.106) TCGA-OD-A75X-06 2 167060703 167060703 C T SCN9A Silent p.V1501V 0.33 TCGA-OD-A75X-06 2 168102399 168102399 C T XIRP2 Silent p.F1499F 0.26 TCGA-OD-A75X-06 2 168105435 168105435 G A XIRP2 Silent p.R2511R 0.61 TCGA-OD-A75X-06 2 169938332 169938332 C T DHRS9 Missense_Mutation p.L81F 0.61 tolerated(0.11) benign(0.227) TCGA-OD-A75X-06 2 170097432 170097432 G A LRP2 Intron 0.63 TCGA-OD-A75X-06 2 170592400 170592400 G A KLHL23 Nonsense_Mutation p.W292* 0.61 TCGA-OD-A75X-06 2 174232441 174232441 A T CDCA7 3'UTR 0.61 TCGA-OD-A75X-06 2 176987469 176987469 G A HOXD9 5'UTR 0.55 TCGA-OD-A75X-06 2 179412599 179412599 C T TTN Missense_Mutation p.E31252K 0.60 TCGA-OD-A75X-06 2 179427525 179427525 C T TTN Silent p.V27778V 0.65 TCGA-OD-A75X-06 2 179427731 179427731 C T TTN Missense_Mutation p.E27710K 0.61 TCGA-OD-A75X-06 2 179438979 179438979 G A TTN Silent p.I23960I 0.63 TCGA-OD-A75X-06 2 179441255 179441255 C G TTN Splice_Site p.X23239_splice 0.61 TCGA-OD-A75X-06 2 179441841 179441841 G A TTN Missense_Mutation p.S23074F 0.26 TCGA-OD-A75X-06 2 179449496 179449496 C T TTN Silent p.L21624L 0.60 TCGA-OD-A75X-06 2 179453325 179453325 C T TTN Missense_Mutation p.E21043K 0.57 TCGA-OD-A75X-06 2 179453650 179453650 A T TTN Nonsense_Mutation p.Y20934* 0.64 TCGA-OD-A75X-06 2 179477716 179477716 C T TTN Missense_Mutation p.D16578N 0.62 TCGA-OD-A75X-06 2 179484609 179484609 G A TTN Missense_Mutation p.P15479S 0.64 TCGA-OD-A75X-06 2 179574483 179574483 T C TTN Silent p.Q9521Q 0.55 TCGA-OD-A75X-06 2 179587430 179587430 T A TTN Missense_Mutation p.N7399I 0.26 TCGA-OD-A75X-06 2 179592922 179592922 C T TTN Silent p.L6543L 0.12 TCGA-OD-A75X-06 2 179615146 179615146 G A TTN Intron 0.25 TCGA-OD-A75X-06 2 179650464 179650464 C T TTN Silent p.K792K 0.58 TCGA-OD-A75X-06 2 179650466 179650466 T C TTN Missense_Mutation p.K792E 0.58 TCGA-OD-A75X-06 2 180047865 180047865 C T SESTD1 Missense_Mutation p.E36K 0.36 tolerated(0.17) benign(0.195) TCGA-OD-A75X-06 2 182468676 182468676 G A CERKL Silent p.F123F 0.69 TCGA-OD-A75X-06 2 186673384 186673384 C T FSIP2 Missense_Mutation p.P6540S 0.34 possibly_damaging(0.507) TCGA-OD-A75X-06 2 189852853 189852853 G A COL3A1 Missense_Mutation p.G192D 0.24 unknown(0) TCGA-OD-A75X-06 2 189873729 189873729 C T COL3A1 Missense_Mutation p.A1202V 0.66 unknown(0) TCGA-OD-A75X-06 2 189931159 189931159 C T COL5A2 Missense_Mutation p.G507D 0.29 probably_damaging(0.997) TCGA-OD-A75X-06 2 196659125 196659125 G A DNAH7 Silent p.I3551I 0.55 TCGA-OD-A75X-06 2 196791224 196791224 C T DNAH7 Missense_Mutation p.G1180R 0.30 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 2 196799458 196799458 C T DNAH7 Missense_Mutation p.E1110K 0.60 tolerated(0.28) benign(0.103) TCGA-OD-A75X-06 2 202050808 202050808 A T CASP10 Missense_Mutation p.E103V 0.25 deleterious(0) possibly_damaging(0.578) TCGA-OD-A75X-06 2 202082378 202082378 G A CASP10 Missense_Mutation p.G495R 0.31 deleterious(0) possibly_damaging(0.901) TCGA-OD-A75X-06 2 204599640 204599640 G A CD28 3'UTR 0.27 TCGA-OD-A75X-06 2 206869793 206869793 G A INO80D Nonsense_Mutation p.Q795* 0.32 TCGA-OD-A75X-06 2 211541835 211541835 G A CPS1 Missense_Mutation p.G1466E 0.67 tolerated(0.06) possibly_damaging(0.653) TCGA-OD-A75X-06 2 212495235 212495235 C T ERBB4 Silent p.R677R 0.62 TCGA-OD-A75X-06 2 216251618 216251618 C T FN1 Nonsense_Mutation p.W1469* 0.63 TCGA-OD-A75X-06 2 218712673 218712673 G A TNS1 Missense_Mutation p.S731F 0.59 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 2 219693314 219693314 C T PRKAG3 Missense_Mutation p.A215T 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-OD-A75X-06 2 220156203 220156203 G A PTPRN Silent p.I906I 0.30 TCGA-OD-A75X-06 2 220412676 220412676 C T TMEM198 Silent p.L205L 0.63 TCGA-OD-A75X-06 2 220412677 220412677 C T TMEM198 Missense_Mutation p.R206W 0.63 deleterious(0) benign(0.05) TCGA-OD-A75X-06 2 227895221 227895221 C T COL4A4 Missense_Mutation p.G1304D 0.17 unknown(0) TCGA-OD-A75X-06 2 228128574 228128574 G A COL4A3 Missense_Mutation p.G410E 0.29 probably_damaging(1) TCGA-OD-A75X-06 2 229890376 229890376 G A PID1 Missense_Mutation p.S240F 0.29 deleterious(0) probably_damaging(0.991) TCGA-OD-A75X-06 2 231106160 231106160 G A SP140 Missense_Mutation p.D150N 0.56 tolerated(0.4) benign(0.051) TCGA-OD-A75X-06 2 231157442 231157442 G A SP140 Missense_Mutation p.R636K 0.56 tolerated(0.1) benign(0.349) TCGA-OD-A75X-06 2 232458657 232458657 C T C2orf57 Missense_Mutation p.P332L 0.32 deleterious(0) benign(0.026) TCGA-OD-A75X-06 2 233898955 233898955 G A NEU2 Missense_Mutation p.E111K 0.61 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 2 234545374 234545374 C T UGT1A10 Missense_Mutation p.S69L 0.60 deleterious(0.05) benign(0.012) TCGA-OD-A75X-06 2 234775044 234775044 G A MSL3P1 RNA 0.36 TCGA-OD-A75X-06 2 236715901 236715901 C T AGAP1 Missense_Mutation p.P326S 0.53 tolerated(0.67) probably_damaging(0.999) TCGA-OD-A75X-06 2 240984558 240984558 G A OR6B3 Missense_Mutation p.A311V 0.65 tolerated(0.42) benign(0) TCGA-OD-A75X-06 2 241829509 241829509 C T C2orf54 Silent p.L269L 0.67 TCGA-OD-A75X-06 2 242142881 242142881 G A ANO7 Missense_Mutation p.G340E 0.33 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 2 242144280 242144280 G A ANO7 Missense_Mutation p.G351E 0.50 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 2 243064452 243064452 C T AC093642.5 RNA 0.51 TCGA-OD-A75X-06 2 26864185 26864185 C T CIB4 5'UTR 0.47 TCGA-OD-A75X-06 2 27353615 27353615 A T ABHD1 3'UTR 0.50 TCGA-OD-A75X-06 2 27680737 27680737 G A IFT172 Missense_Mutation p.L1028F 0.46 deleterious(0) probably_damaging(0.94) TCGA-OD-A75X-06 2 27693801 27693801 A G IFT172 Silent p.T562T 0.48 TCGA-OD-A75X-06 2 29368177 29368177 G A CLIP4 Missense_Mutation p.G322E 0.48 deleterious(0) probably_damaging(0.979) TCGA-OD-A75X-06 2 30977214 30977214 C T CAPN13 Missense_Mutation p.E295K 0.55 tolerated(0.48) benign(0.156) TCGA-OD-A75X-06 2 33246025 33246025 A G LTBP1 Silent p.Q205Q 0.39 TCGA-OD-A75X-06 2 37543423 37543423 A G PRKD3 Missense_Mutation p.L82S 0.50 deleterious(0.04) possibly_damaging(0.796) TCGA-OD-A75X-06 2 39944445 39944445 G A TMEM178A 3'UTR 0.26 TCGA-OD-A75X-06 2 48914821 48914821 T C LHCGR 3'UTR 0.55 TCGA-OD-A75X-06 2 54873332 54873332 C T SPTBN1 Missense_Mutation p.T1529I 0.39 deleterious(0.04) possibly_damaging(0.747) TCGA-OD-A75X-06 2 71913605 71913605 G A DYSF Missense_Mutation p.V2115M 0.42 deleterious(0) possibly_damaging(0.843) TCGA-OD-A75X-06 2 73676435 73676435 C T ALMS1 Silent p.F926F 0.37 TCGA-OD-A75X-06 2 88390598 88390598 C T SMYD1 Missense_Mutation p.P199L 0.48 deleterious(0.02) probably_damaging(0.978) TCGA-OD-A75X-06 2 90229387 90229387 C T IGKV1D-42 Silent p.F69F 0.38 TCGA-OD-A75X-06 2 9543450 9543450 T C ASAP2 Silent p.A1005A 0.42 TCGA-OD-A75X-06 2 95481655 95481655 C T ANKRD20A8P RNA 0.30 TCGA-OD-A75X-06 2 95481750 95481750 C T ANKRD20A8P Intron 0.33 TCGA-OD-A75X-06 2 97217908 97217908 C T ARID5A Missense_Mutation p.A548V 0.38 tolerated(0.09) possibly_damaging(0.543) TCGA-OD-A75X-06 3 10130136 10130136 C T FANCD2 Missense_Mutation p.S1157F 0.40 deleterious(0.03) benign(0.132) TCGA-OD-A75X-06 3 108100312 108100312 C T MYH15 3'UTR 0.45 TCGA-OD-A75X-06 3 108476057 108476057 G A RETNLB 5'UTR 0.56 TCGA-OD-A75X-06 3 108751586 108751586 G A MORC1 Missense_Mutation p.P516S 0.44 deleterious(0.01) possibly_damaging(0.589) TCGA-OD-A75X-06 3 109049332 109049332 C T DPPA4 Intron 0.54 TCGA-OD-A75X-06 3 111603475 111603475 C T PHLDB2 Missense_Mutation p.S184F 0.43 deleterious(0) possibly_damaging(0.498) TCGA-OD-A75X-06 3 112666712 112666712 G A CD200R1 Missense_Mutation p.H43Y 0.54 tolerated(1) benign(0) TCGA-OD-A75X-06 3 11302325 11302325 G A HRH1 3'UTR 0.61 TCGA-OD-A75X-06 3 113184512 113184512 G C SPICE1 Missense_Mutation p.N425K 0.40 deleterious(0) possibly_damaging(0.893) TCGA-OD-A75X-06 3 113379462 113379462 G A KIAA2018 Missense_Mutation p.P356L 0.33 benign(0.017) TCGA-OD-A75X-06 3 113634687 113634687 T C GRAMD1C Splice_Site p.X364_splice 0.39 TCGA-OD-A75X-06 3 119328347 119328347 C T PLA1A Silent p.I162I 0.45 TCGA-OD-A75X-06 3 119812414 119812414 C T GSK3B 5'UTR 0.50 TCGA-OD-A75X-06 3 120365120 120365120 G A HGD Missense_Mutation p.P215S 0.46 deleterious(0) probably_damaging(0.98) TCGA-OD-A75X-06 3 121354584 121354584 G A HCLS1 Missense_Mutation p.A230V 0.47 deleterious(0.01) possibly_damaging(0.483) TCGA-OD-A75X-06 3 121415582 121415582 G A GOLGB1 Missense_Mutation p.S1263F 0.43 benign(0.008) TCGA-OD-A75X-06 3 12546690 12546690 C T TSEN2 Missense_Mutation p.P290L 0.56 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 3 12641300 12641300 C T RAF1 Missense_Mutation p.R333H 0.19 tolerated(0.18) benign(0.042) TCGA-OD-A75X-06 3 127379952 127379952 G A PODXL2 Missense_Mutation p.E361K 0.49 deleterious(0.03) benign(0.146) TCGA-OD-A75X-06 3 127395238 127395238 G A ABTB1 Nonsense_Mutation p.W148* 0.43 TCGA-OD-A75X-06 3 129238562 129238562 C T IFT122 Missense_Mutation p.P1259L 0.50 deleterious(0.02) possibly_damaging(0.617) TCGA-OD-A75X-06 3 133099842 133099842 C T TMEM108 Silent p.F429F 0.34 TCGA-OD-A75X-06 3 140281142 140281142 C T CLSTN2 Missense_Mutation p.S735F 0.30 deleterious(0.02) possibly_damaging(0.564) TCGA-OD-A75X-06 3 142413348 142413348 G A PLS1 Missense_Mutation p.M405I 0.37 tolerated(0.12) benign(0.296) TCGA-OD-A75X-06 3 142539803 142539803 C T PCOLCE2 Missense_Mutation p.G345E 0.38 deleterious(0.04) probably_damaging(0.986) TCGA-OD-A75X-06 3 145796919 145796919 C T PLOD2 Missense_Mutation p.R495Q 0.43 tolerated(0.34) benign(0.258) TCGA-OD-A75X-06 3 151165537 151165537 G A IGSF10 Silent p.F744F 0.39 TCGA-OD-A75X-06 3 151171382 151171382 G A IGSF10 Missense_Mutation p.H169Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 3 15126297 15126297 G A ZFYVE20 Silent p.L181L 0.42 TCGA-OD-A75X-06 3 15762511 15762511 A G ANKRD28 Missense_Mutation p.F273L 0.39 tolerated(0.26) benign(0.236) TCGA-OD-A75X-06 3 158261191 158261191 C T RSRC1 Missense_Mutation p.P276L 0.42 tolerated_low_confidence(0.4) benign(0.022) TCGA-OD-A75X-06 3 164906263 164906263 C T SLITRK3 Missense_Mutation p.G786R 0.47 tolerated(0.47) benign(0.055) TCGA-OD-A75X-06 3 164906264 164906264 C T SLITRK3 Silent p.P785P 0.46 TCGA-OD-A75X-06 3 167159941 167159941 G A SERPINI2 Missense_Mutation p.P392S 0.35 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 3 167217996 167217996 C T WDR49 Silent p.R640R 0.46 TCGA-OD-A75X-06 3 169099271 169099271 C T MECOM Missense_Mutation p.E51K 0.45 tolerated(0.09) probably_damaging(0.917) TCGA-OD-A75X-06 3 17051876 17051876 C T PLCL2 Silent p.F220F 0.43 TCGA-OD-A75X-06 3 186395101 186395101 G A HRG Missense_Mutation p.G336E 0.38 tolerated(1) benign(0.011) TCGA-OD-A75X-06 3 188925281 188925281 G A TPRG1 Silent p.P36P 0.51 TCGA-OD-A75X-06 3 193029693 193029693 C G ATP13A5 Missense_Mutation p.R786P 0.46 tolerated(0.27) benign(0.002) TCGA-OD-A75X-06 3 193120431 193120431 C T ATP13A4 3'UTR 0.53 TCGA-OD-A75X-06 3 19384153 19384153 C T KCNH8 Missense_Mutation p.H173Y 0.38 deleterious(0.03) possibly_damaging(0.844) TCGA-OD-A75X-06 3 194147832 194147832 A G ATP13A3 Missense_Mutation p.W1033R 0.40 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 3 195517473 195517473 C T MUC4 Silent p.Q326Q 0.39 TCGA-OD-A75X-06 3 19924107 19924107 G A EFHB Missense_Mutation p.P755S 0.40 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 3 27436502 27436502 G A SLC4A7 Silent p.I927I 0.48 TCGA-OD-A75X-06 3 36779975 36779975 G C DCLK3 Missense_Mutation p.T59S 0.42 tolerated(0.41) benign(0.002) TCGA-OD-A75X-06 3 36873570 36873570 C T TRANK1 Missense_Mutation p.D2458N 0.43 tolerated(0.17) benign(0.043) TCGA-OD-A75X-06 3 36898910 36898910 C T TRANK1 Missense_Mutation p.G724E 0.43 tolerated(1) benign(0.003) TCGA-OD-A75X-06 3 37067303 37067303 C T MLH1 Missense_Mutation p.S405F 0.50 tolerated(0.05) benign(0.197) TCGA-OD-A75X-06 3 37190414 37190414 C T LRRFIP2 Missense_Mutation p.D21N 0.42 deleterious(0) possibly_damaging(0.69) TCGA-OD-A75X-06 3 38592577 38592577 G A SCN5A Silent p.I1762I 0.48 TCGA-OD-A75X-06 3 38739651 38739651 C T SCN10A Missense_Mutation p.G1687D 0.35 tolerated(0.13) benign(0.077) TCGA-OD-A75X-06 3 38793944 38793944 G A SCN10A Silent p.F507F 0.52 TCGA-OD-A75X-06 3 38991912 38991912 A G SCN11A 5'UTR 0.45 TCGA-OD-A75X-06 3 39230053 39230053 G A XIRP1 Missense_Mutation p.S295F 0.42 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 3 45557692 45557692 G A LARS2 Silent p.Q656Q 0.45 TCGA-OD-A75X-06 3 46399575 46399575 C T CCR2 Missense_Mutation p.S186F 0.46 tolerated(0.16) benign(0.02) TCGA-OD-A75X-06 3 46944016 46944016 G A PTH1R Silent p.R404R 0.41 TCGA-OD-A75X-06 3 4735308 4735308 C T ITPR1 Silent p.V1373V 0.41 TCGA-OD-A75X-06 3 47470067 47470067 G A SCAP Missense_Mutation p.R116C 0.41 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 3 48448477 48448477 G A PLXNB1 Silent p.L2037L 0.41 TCGA-OD-A75X-06 3 4878583 4878583 G A ITPR1 Silent p.T2703T 0.33 TCGA-OD-A75X-06 3 49168499 49168499 G A LAMB2 Nonsense_Mutation p.R267* 0.44 TCGA-OD-A75X-06 3 51752187 51752187 C T GRM2 3'UTR 0.38 TCGA-OD-A75X-06 3 52324415 52324415 C T GLYCTK Silent p.L19L 0.24 TCGA-OD-A75X-06 3 52559077 52559077 G A NT5DC2 Missense_Mutation p.P417S 0.57 tolerated(0.08) probably_damaging(0.975) TCGA-OD-A75X-06 3 52842788 52842788 G A ITIH3 3'UTR 0.50 TCGA-OD-A75X-06 3 54537603 54537603 C T CACNA2D3 Missense_Mutation p.P156S 0.37 tolerated(0.31) probably_damaging(0.997) TCGA-OD-A75X-06 3 54952773 54952773 G A LRTM1 Missense_Mutation p.H251Y 0.40 tolerated(0.18) benign(0.016) TCGA-OD-A75X-06 3 54958874 54958874 C T LRTM1 Missense_Mutation p.E126K 0.41 tolerated(0.18) benign(0.023) TCGA-OD-A75X-06 3 55043454 55043454 C T CACNA2D3 Silent p.S953S 0.46 TCGA-OD-A75X-06 3 58084492 58084492 C T FLNB Missense_Mutation p.T401I 0.46 deleterious(0.02) benign(0.003) TCGA-OD-A75X-06 3 64607904 64607904 G A ADAMTS9 Missense_Mutation p.P886S 0.42 tolerated(0.11) probably_damaging(0.992) TCGA-OD-A75X-06 3 69171426 69171426 C T LMOD3 Missense_Mutation p.E38K 0.29 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 3 69171427 69171427 C T LMOD3 Silent p.S37S 0.36 TCGA-OD-A75X-06 3 71026984 71026984 G A FOXP1 Missense_Mutation p.S450L 0.40 deleterious(0.04) possibly_damaging(0.614) TCGA-OD-A75X-06 3 72799677 72799677 C T SHQ1 Missense_Mutation p.E498K 0.41 tolerated_low_confidence(0.09) benign(0.007) TCGA-OD-A75X-06 3 77542398 77542398 G A ROBO2 Missense_Mutation p.R240Q 0.35 deleterious(0) benign(0.148) TCGA-OD-A75X-06 3 89480345 89480345 C T EPHA3 Nonsense_Mutation p.R728* 0.46 TCGA-OD-A75X-06 3 89528679 89528679 G A EPHA3 3'UTR 0.59 TCGA-OD-A75X-06 3 9945716 9945716 G A IL17RE Missense_Mutation p.G50E 0.44 tolerated_low_confidence(0.09) benign(0.008) TCGA-OD-A75X-06 3 99513806 99513806 G A COL8A1 Missense_Mutation p.G354D 0.49 deleterious(0) unknown(0) TCGA-OD-A75X-06 3 9970142 9970142 C T IL17RC Missense_Mutation p.P415L 0.47 tolerated(0.09) benign(0.014) TCGA-OD-A75X-06 3 9991428 9991428 G A PRRT3 Silent p.S124S 0.39 TCGA-OD-A75X-06 4 100047751 100047751 C T ADH4 Missense_Mutation p.G371E 0.43 deleterious(0.01) possibly_damaging(0.823) TCGA-OD-A75X-06 4 100129904 100129904 G A ADH6 Missense_Mutation p.P250L 0.41 deleterious(0) probably_damaging(0.971) TCGA-OD-A75X-06 4 100518276 100518276 C T MTTP Missense_Mutation p.S321F 0.47 deleterious(0) probably_damaging(0.948) TCGA-OD-A75X-06 4 114824378 114824378 G A ARSJ Silent p.S284S 0.44 TCGA-OD-A75X-06 4 120193171 120193171 A G USP53 Missense_Mutation p.K719R 0.33 tolerated(0.1) benign(0.01) TCGA-OD-A75X-06 4 120193172 120193172 A G USP53 Silent p.K719K 0.33 TCGA-OD-A75X-06 4 120193177 120193177 C A USP53 Missense_Mutation p.T721K 0.32 tolerated(0.18) benign(0.051) TCGA-OD-A75X-06 4 123868494 123868494 G C SPATA5 Missense_Mutation p.G522A 0.51 deleterious(0.02) probably_damaging(1) TCGA-OD-A75X-06 4 126320065 126320065 G A FAT4 Missense_Mutation p.D1768N 0.39 probably_damaging(0.992) TCGA-OD-A75X-06 4 126411405 126411405 G A FAT4 Silent p.G4476G 0.44 TCGA-OD-A75X-06 4 126411646 126411646 G A FAT4 Missense_Mutation p.D4557N 0.43 probably_damaging(0.993) TCGA-OD-A75X-06 4 13338663 13338663 G A HSP90AB2P RNA 0.44 TCGA-OD-A75X-06 4 134071135 134071135 G A PCDH10 5'UTR 0.47 TCGA-OD-A75X-06 4 138442227 138442227 C T PCDH18 Missense_Mutation p.V1122M 0.45 deleterious(0) probably_damaging(0.976) TCGA-OD-A75X-06 4 138442251 138442251 C T PCDH18 Missense_Mutation p.E1114K 0.46 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 4 138442555 138442555 G A PCDH18 Silent p.F1012F 0.47 TCGA-OD-A75X-06 4 138452009 138452009 C T PCDH18 Missense_Mutation p.E412K 0.43 tolerated(0.24) probably_damaging(0.955) TCGA-OD-A75X-06 4 138452990 138452990 C A PCDH18 Nonsense_Mutation p.E85* 0.32 TCGA-OD-A75X-06 4 146065533 146065533 T C OTUD4 Silent p.R427R 0.48 TCGA-OD-A75X-06 4 148463691 148463691 G A EDNRA Missense_Mutation p.G402E 0.46 deleterious(0.03) benign(0.036) TCGA-OD-A75X-06 4 151818912 151818912 G A LRBA Silent p.F661F 0.37 TCGA-OD-A75X-06 4 159091743 159091743 G A FAM198B Missense_Mutation p.P262L 0.32 tolerated(0.3) possibly_damaging(0.851) TCGA-OD-A75X-06 4 159790119 159790119 C T FNIP2 Silent p.C777C 0.58 TCGA-OD-A75X-06 4 162421170 162421170 G A FSTL5 Nonsense_Mutation p.Q486* 0.37 TCGA-OD-A75X-06 4 162459366 162459366 C T FSTL5 Missense_Mutation p.D422N 0.40 deleterious(0.04) probably_damaging(0.995) TCGA-OD-A75X-06 4 164050306 164050306 G A NAF1 Missense_Mutation p.P410S 0.55 deleterious(0.01) benign(0.344) TCGA-OD-A75X-06 4 164507036 164507036 G A MARCH1 Silent p.P96P 0.33 TCGA-OD-A75X-06 4 16597413 16597413 C T LDB2 Silent p.S107S 0.44 TCGA-OD-A75X-06 4 169312701 169312701 T C DDX60L Missense_Mutation p.N1302S 0.43 deleterious(0.02) possibly_damaging(0.612) TCGA-OD-A75X-06 4 173730523 173730523 G A GALNTL6 Missense_Mutation p.D189N 0.41 tolerated(0.17) benign(0.004) TCGA-OD-A75X-06 4 175897029 175897029 C T ADAM29 Missense_Mutation p.T118I 0.35 deleterious(0.02) possibly_damaging(0.838) TCGA-OD-A75X-06 4 17839386 17839386 G A NCAPG Missense_Mutation p.G810R 0.45 tolerated(0.24) benign(0.02) TCGA-OD-A75X-06 4 17839387 17839387 G A NCAPG Missense_Mutation p.G810E 0.46 tolerated(0.09) benign(0.024) TCGA-OD-A75X-06 4 183600941 183600941 C T TENM3 Silent p.I483I 0.40 TCGA-OD-A75X-06 4 186379979 186379979 A G CCDC110 Silent p.L588L 0.42 TCGA-OD-A75X-06 4 186456496 186456496 C T PDLIM3 Silent p.R31R 0.41 TCGA-OD-A75X-06 4 186544635 186544635 G A SORBS2 Missense_Mutation p.H746Y 0.43 deleterious(0.02) benign(0.384) TCGA-OD-A75X-06 4 187194302 187194302 C T F11 Missense_Mutation p.S99F 0.46 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 4 188924973 188924973 G A ZFP42 3'UTR 0.50 TCGA-OD-A75X-06 4 20598203 20598203 G A SLIT2 Silent p.V1162V 0.43 TCGA-OD-A75X-06 4 20852243 20852243 C T KCNIP4 Missense_Mutation p.E71K 0.44 deleterious(0.01) benign(0.039) TCGA-OD-A75X-06 4 2990529 2990529 C T GRK4 Missense_Mutation p.P75L 0.27 tolerated(0.06) benign(0.063) TCGA-OD-A75X-06 4 38696384 38696384 T C KLF3 Missense_Mutation p.I238T 0.47 deleterious(0.04) benign(0.351) TCGA-OD-A75X-06 4 38907208 38907208 G A FAM114A1 Missense_Mutation p.G168R 0.45 tolerated(0.53) benign(0.03) TCGA-OD-A75X-06 4 40339308 40339308 C T CHRNA9 Nonsense_Mutation p.Q98* 0.42 TCGA-OD-A75X-06 4 41652581 41652581 G A LIMCH1 Missense_Mutation p.E613K 0.49 tolerated(0.1) benign(0.075) TCGA-OD-A75X-06 4 46125833 46125833 C T GABRG1 Missense_Mutation p.G33E 0.49 tolerated(0.39) probably_damaging(0.994) TCGA-OD-A75X-06 4 54373514 54373514 C T LNX1 Missense_Mutation p.E249K 0.47 tolerated(0.45) benign(0.371) TCGA-OD-A75X-06 4 55152070 55152070 C T PDGFRA Silent p.I834I 0.49 TCGA-OD-A75X-06 4 56890737 56890737 C T CEP135 Missense_Mutation p.P1131S 0.40 tolerated(0.36) probably_damaging(0.986) TCGA-OD-A75X-06 4 57181116 57181116 G A KIAA1211 Missense_Mutation p.R483K 0.17 tolerated(0.87) benign(0.14) TCGA-OD-A75X-06 4 57798003 57798003 T G REST Silent p.P993P 0.49 TCGA-OD-A75X-06 4 5868433 5868433 G A CRMP1 Silent p.S144S 0.37 TCGA-OD-A75X-06 4 69095033 69095033 C T TMPRSS11B Missense_Mutation p.M296I 0.41 tolerated(0.32) benign(0.045) TCGA-OD-A75X-06 4 69682021 69682021 G A UGT2B10 Missense_Mutation p.R95K 0.38 tolerated(0.41) benign(0.004) TCGA-OD-A75X-06 4 69796478 69796478 G A UGT2A3 Missense_Mutation p.P364S 0.58 deleterious(0.01) probably_damaging(0.965) TCGA-OD-A75X-06 4 70460345 70460345 C T UGT2A1 Missense_Mutation p.G551E 0.54 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 4 74315155 74315155 G A AFP Missense_Mutation p.E388K 0.42 tolerated(0.13) benign(0.134) TCGA-OD-A75X-06 4 74459252 74459252 C T RASSF6 Missense_Mutation p.R100Q 0.51 tolerated(0.08) benign(0.135) TCGA-OD-A75X-06 4 77317509 77317509 G A CCDC158 Silent p.I67I 0.44 TCGA-OD-A75X-06 4 81974625 81974625 G A BMP3 Missense_Mutation p.E452K 0.37 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 4 84337938 84337938 C A HELQ Missense_Mutation p.R1048S 0.46 tolerated(0.08) benign(0.003) TCGA-OD-A75X-06 4 85707259 85707259 G A WDFY3 Missense_Mutation p.S1312F 0.48 deleterious(0.02) benign(0.017) TCGA-OD-A75X-06 4 87674195 87674195 C T PTPN13 Missense_Mutation p.S1067F 0.50 tolerated(0.06) probably_damaging(0.991) TCGA-OD-A75X-06 4 88244043 88244043 G A HSD17B13 5'UTR 0.71 TCGA-OD-A75X-06 4 88732573 88732573 G A IBSP Silent p.E155E 0.43 TCGA-OD-A75X-06 4 89597509 89597509 C T HERC3 Missense_Mutation p.P654S 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-OD-A75X-06 4 89772259 89772259 G A FAM13A Nonsense_Mutation p.Q307* 0.41 TCGA-OD-A75X-06 4 90171262 90171262 G A GPRIN3 5'UTR 0.49 TCGA-OD-A75X-06 4 94344033 94344033 G A GRID2 Missense_Mutation p.E487K 0.43 deleterious(0.01) possibly_damaging(0.819) TCGA-OD-A75X-06 4 99996084 99996100 CCATGTGCGACCTGTTA - ADH5 Frame_Shift_Del p.V309Efs*20 0.34 TCGA-OD-A75X-06 5 10250465 10250465 G A CCT5 Missense_Mutation p.G5R 0.76 deleterious(0.01) possibly_damaging(0.887) TCGA-OD-A75X-06 5 1033528 1033528 G A NKD2 Missense_Mutation p.G82R 1.00 tolerated(0.21) possibly_damaging(0.865) TCGA-OD-A75X-06 5 121780261 121780261 T C SNCAIP Silent p.L476L 0.26 TCGA-OD-A75X-06 5 122359549 122359549 C T PPIC 3'UTR 0.32 TCGA-OD-A75X-06 5 122361498 122361498 C T PPIC Missense_Mutation p.G164E 0.52 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 5 125816343 125816343 A G GRAMD3 Missense_Mutation p.N242D 0.35 deleterious(0.01) possibly_damaging(0.488) TCGA-OD-A75X-06 5 131396361 131396361 G A IL3 5'UTR 0.39 TCGA-OD-A75X-06 5 132270562 132270562 G A AFF4 Silent p.F65F 0.60 TCGA-OD-A75X-06 5 134364829 134364829 G A PITX1 Silent p.S195S 0.35 TCGA-OD-A75X-06 5 136403404 136403404 C T SPOCK1 Missense_Mutation p.A197T 0.21 tolerated(0.44) benign(0.434) TCGA-OD-A75X-06 5 13735353 13735353 G A DNAH5 Missense_Mutation p.A3883V 0.21 possibly_damaging(0.483) TCGA-OD-A75X-06 5 137475673 137475673 G A BRD8 3'UTR 0.31 TCGA-OD-A75X-06 5 138163296 138163296 C T CTNNA1 Silent p.A317A 0.27 TCGA-OD-A75X-06 5 140255991 140255991 G A PCDHA12 Missense_Mutation p.E312K 0.19 tolerated_low_confidence(0.21) benign(0.127) TCGA-OD-A75X-06 5 140476315 140476315 G A PCDHB2 Silent p.K647K 0.45 TCGA-OD-A75X-06 5 140516880 140516880 G A PCDHB5 Missense_Mutation p.E622K 0.49 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-OD-A75X-06 5 140588530 140588530 C T PCDHB12 Silent p.F17F 0.55 TCGA-OD-A75X-06 5 140589520 140589520 C T PCDHB12 Silent p.I347I 0.64 TCGA-OD-A75X-06 5 140594475 140594475 C T PCDHB13 Silent p.F260F 0.29 TCGA-OD-A75X-06 5 140604757 140604757 C T PCDHB14 Silent p.F560F 0.65 TCGA-OD-A75X-06 5 140751397 140751397 C T PCDHGB3 Missense_Mutation p.P479L 0.26 tolerated(0.08) benign(0.136) TCGA-OD-A75X-06 5 140752181 140752181 C T PCDHGB3 Silent p.L740L 0.36 TCGA-OD-A75X-06 5 145252487 145252487 T C GRXCR2 Silent p.K15K 0.24 TCGA-OD-A75X-06 5 145493731 145493731 G A LARS Missense_Mutation p.H1157Y 0.28 tolerated(1) benign(0) TCGA-OD-A75X-06 5 145886624 145886624 C T TCERG1 Missense_Mutation p.R922C 0.28 deleterious(0) unknown(0) TCGA-OD-A75X-06 5 14769258 14769258 C T ANKH Missense_Mutation p.E47K 0.77 deleterious(0.03) probably_damaging(0.996) TCGA-OD-A75X-06 5 149263002 149263002 C T PDE6A Missense_Mutation p.E709K 0.41 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 5 149501461 149501461 C T PDGFRB Missense_Mutation p.D776N 0.29 deleterious(0.01) possibly_damaging(0.842) TCGA-OD-A75X-06 5 149602638 149602638 C T CAMK2A Silent p.S460S 0.25 TCGA-OD-A75X-06 5 150696403 150696403 G A SLC36A2 Missense_Mutation p.S476F 0.56 tolerated(0.05) benign(0.003) TCGA-OD-A75X-06 5 153175112 153175112 G A GRIA1 Intron 0.48 TCGA-OD-A75X-06 5 154183801 154183801 C T LARP1 Missense_Mutation p.P750L 0.17 deleterious(0) probably_damaging(0.921) TCGA-OD-A75X-06 5 154393573 154393573 G A KIF4B Missense_Mutation p.D52N 0.67 tolerated(0.15) probably_damaging(1) TCGA-OD-A75X-06 5 156593182 156593182 T C FAM71B 5'UTR 0.14 TCGA-OD-A75X-06 5 156747707 156747707 G A CYFIP2 Missense_Mutation p.G497E 0.31 deleterious(0.03) probably_damaging(0.978) TCGA-OD-A75X-06 5 156898686 156898686 C T NIPAL4 Silent p.F211F 0.59 TCGA-OD-A75X-06 5 157065365 157065365 G A SOX30 Missense_Mutation p.P585S 0.57 deleterious(0.04) probably_damaging(1) TCGA-OD-A75X-06 5 157078188 157078188 G A SOX30 Missense_Mutation p.S300F 0.57 deleterious(0) probably_damaging(0.987) TCGA-OD-A75X-06 5 161524644 161524644 G A GABRG2 Missense_Mutation p.E110K 0.55 deleterious(0) possibly_damaging(0.615) TCGA-OD-A75X-06 5 161576197 161576197 G A GABRG2 Missense_Mutation p.D376N 0.63 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 5 16711089 16711089 G A MYO10 Silent p.V699V 0.76 TCGA-OD-A75X-06 5 167420055 167420055 C T TENM2 Silent p.L352L 0.28 TCGA-OD-A75X-06 5 168112875 168112875 G A SLIT3 Silent p.D1124D 0.37 TCGA-OD-A75X-06 5 169535147 169535147 C T FOXI1 Silent p.S223S 0.27 TCGA-OD-A75X-06 5 176008463 176008463 G A CDHR2 Silent p.G646G 0.33 TCGA-OD-A75X-06 5 176862086 176862086 A G GRK6 Missense_Mutation p.T341A 0.60 tolerated(0.11) benign(0.137) TCGA-OD-A75X-06 5 177171947 177171947 C T FAM153A Missense_Mutation p.R17Q 0.16 tolerated_low_confidence(0.09) benign(0.008) TCGA-OD-A75X-06 5 179729488 179729488 C T GFPT2 Missense_Mutation p.G647S 0.56 tolerated(0.13) possibly_damaging(0.889) TCGA-OD-A75X-06 5 19483499 19483499 C T CDH18 Missense_Mutation p.R598Q 0.89 tolerated(1) benign(0.286) TCGA-OD-A75X-06 5 23527584 23527584 G A PRDM9 Missense_Mutation p.R796K 0.78 deleterious(0.04) unknown(0) TCGA-OD-A75X-06 5 31317546 31317546 C T CDH6 Missense_Mutation p.S526F 0.60 deleterious(0.03) possibly_damaging(0.765) TCGA-OD-A75X-06 5 35014124 35014124 C T AGXT2 Missense_Mutation p.G355D 0.67 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 5 35066004 35066004 C T PRLR Silent p.G352G 0.30 TCGA-OD-A75X-06 5 35965804 35965804 C T UGT3A1 Missense_Mutation p.G176E 0.19 deleterious(0.01) probably_damaging(0.942) TCGA-OD-A75X-06 5 36257658 36257658 C T RANBP3L Missense_Mutation p.G249S 0.22 tolerated(0.96) benign(0.004) TCGA-OD-A75X-06 5 38903998 38903998 C T OSMR Missense_Mutation p.P336S 0.25 deleterious(0.01) probably_damaging(0.928) TCGA-OD-A75X-06 5 39202426 39202426 C T FYB Missense_Mutation p.E223K 0.27 deleterious(0.02) benign(0.359) TCGA-OD-A75X-06 5 428049 428049 C T AHRR Missense_Mutation p.A301V 0.38 tolerated(0.36) benign(0.072) TCGA-OD-A75X-06 5 45262624 45262624 G A HCN1 Missense_Mutation p.S691L 0.52 tolerated_low_confidence(0.17) benign(0.012) TCGA-OD-A75X-06 5 482707 482707 C T SLC9A3 Missense_Mutation p.V438I 0.40 tolerated(0.12) probably_damaging(0.965) TCGA-OD-A75X-06 5 50084407 50084407 G A PARP8 Missense_Mutation p.G241R 0.31 deleterious(0.01) possibly_damaging(0.855) TCGA-OD-A75X-06 5 63256279 63256279 C T HTR1A Silent p.%3D 0.26 TCGA-OD-A75X-06 5 64483905 64483905 C T ADAMTS6 Missense_Mutation p.E950K 0.22 tolerated(0.82) benign(0.122) TCGA-OD-A75X-06 5 64838670 64838670 G A CENPK Missense_Mutation p.P83S 0.63 tolerated(1) benign(0.025) TCGA-OD-A75X-06 5 72201150 72201150 T A TNPO1 Missense_Mutation p.N870K 0.32 tolerated(0.13) benign(0.025) TCGA-OD-A75X-06 5 78407705 78407705 G A BHMT 5'UTR 0.89 TCGA-OD-A75X-06 5 79026044 79026044 G A CMYA5 Missense_Mutation p.E486K 0.51 possibly_damaging(0.636) TCGA-OD-A75X-06 5 79032713 79032713 C T CMYA5 Missense_Mutation p.P2709S 0.61 unknown(0) TCGA-OD-A75X-06 5 79032714 79032714 C T CMYA5 Missense_Mutation p.P2709L 0.59 unknown(0) TCGA-OD-A75X-06 5 82816726 82816726 G A VCAN Silent p.E867E 0.32 TCGA-OD-A75X-06 5 82841443 82841443 G A VCAN Missense_Mutation p.G3118E 0.65 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 5 82937179 82937179 T A HAPLN1 3'UTR 0.59 TCGA-OD-A75X-06 5 93076785 93076785 G C POU5F2 Missense_Mutation p.T162R 0.52 deleterious(0.02) probably_damaging(0.909) TCGA-OD-A75X-06 5 94820512 94820512 G A TTC37 Silent p.S1323S 0.51 TCGA-OD-A75X-06 6 100395759 100395759 G A MCHR2 Missense_Mutation p.H91Y 0.47 deleterious(0) probably_damaging(0.993) TCGA-OD-A75X-06 6 10586182 10586182 C A GCNT2 Intron 0.39 TCGA-OD-A75X-06 6 108224095 108224095 G A SEC63 Missense_Mutation p.P388S 0.32 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 6 114379241 114379241 C T HS3ST5 Missense_Mutation p.G74D 0.30 tolerated(0.06) benign(0.021) TCGA-OD-A75X-06 6 117730798 117730798 G A ROS1 Missense_Mutation p.S79L 0.37 deleterious(0.01) benign(0.198) TCGA-OD-A75X-06 6 12124262 12124262 C T HIVEP1 Nonsense_Mutation p.R1412* 0.39 TCGA-OD-A75X-06 6 12125433 12125433 T C HIVEP1 Missense_Mutation p.V1802A 0.23 deleterious(0) possibly_damaging(0.507) TCGA-OD-A75X-06 6 123369775 123369775 C T CLVS2 Silent p.F191F 0.46 TCGA-OD-A75X-06 6 123384931 123384931 G A CLVS2 3'UTR 0.44 TCGA-OD-A75X-06 6 124125348 124125348 G A NKAIN2 Translation_Start_Site p.M1? 0.25 deleterious(0.01) benign(0.003) TCGA-OD-A75X-06 6 128320017 128320017 G A PTPRK Missense_Mutation p.R843C 0.36 tolerated(0.05) possibly_damaging(0.862) TCGA-OD-A75X-06 6 131190990 131190990 C T EPB41L2 Missense_Mutation p.E774K 0.49 tolerated(0.08) benign(0.034) TCGA-OD-A75X-06 6 134373747 134373747 A G SLC2A12 5'UTR 0.33 TCGA-OD-A75X-06 6 134491532 134491532 G A SGK1 Silent p.T485T 0.49 TCGA-OD-A75X-06 6 134491533 134491533 G A SGK1 Missense_Mutation p.T485I 0.50 deleterious(0.02) possibly_damaging(0.807) TCGA-OD-A75X-06 6 136476860 136476860 G A PDE7B Silent p.L225L 0.52 TCGA-OD-A75X-06 6 138200427 138200427 T C TNFAIP3 Silent p.F615F 0.56 TCGA-OD-A75X-06 6 142396799 142396799 C T NMBR Missense_Mutation p.E387K 0.46 deleterious(0.02) benign(0.037) TCGA-OD-A75X-06 6 147646216 147646216 G A STXBP5 Missense_Mutation p.G642R 0.54 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 6 151936701 151936701 G A CCDC170 Missense_Mutation p.E612K 0.53 tolerated(0.07) benign(0.16) TCGA-OD-A75X-06 6 152443716 152443716 G A SYNE1 Missense_Mutation p.P8750L 0.30 probably_damaging(0.999) TCGA-OD-A75X-06 6 152644623 152644623 G A SYNE1 Missense_Mutation p.R5303W 0.49 probably_damaging(0.912) TCGA-OD-A75X-06 6 152697585 152697585 G A SYNE1 Silent p.I3085I 0.62 TCGA-OD-A75X-06 6 152768689 152768689 C T SYNE1 Silent p.L1191L 0.43 TCGA-OD-A75X-06 6 152949484 152949484 G A SYNE1 5'UTR 0.31 TCGA-OD-A75X-06 6 157454325 157454325 C G ARID1B Missense_Mutation p.S845R 0.31 possibly_damaging(0.617) TCGA-OD-A75X-06 6 159653645 159653645 C T FNDC1 Missense_Mutation p.P701S 0.33 tolerated_low_confidence(0.1) unknown(0) TCGA-OD-A75X-06 6 161056161 161056161 C T LPA Missense_Mutation p.E357K 0.05 tolerated_low_confidence(0.09) benign(0.012) TCGA-OD-A75X-06 6 162206911 162206911 G A PARK2 Missense_Mutation p.S255F 0.52 tolerated(0.46) benign(0.001) TCGA-OD-A75X-06 6 167550575 167550575 G A CCR6 Missense_Mutation p.R286Q 0.29 tolerated(0.12) benign(0.24) TCGA-OD-A75X-06 6 168312101 168312101 A G MLLT4 Missense_Mutation p.T657A 0.34 tolerated(0.52) benign(0.001) TCGA-OD-A75X-06 6 24145856 24145856 C T NRSN1 Silent p.I90I 0.41 TCGA-OD-A75X-06 6 25652673 25652673 C T SCGN Silent p.A14A 0.27 TCGA-OD-A75X-06 6 27216676 27216676 C T PRSS16 Silent p.F96F 0.15 TCGA-OD-A75X-06 6 27835053 27835053 C T HIST1H1B Silent p.L85L 0.27 TCGA-OD-A75X-06 6 28054000 28054000 T C ZNF165 Silent p.P154P 0.33 TCGA-OD-A75X-06 6 29395011 29395011 C T OR11A1 Silent p.L136L 0.19 TCGA-OD-A75X-06 6 29408446 29408446 G A OR10C1 Silent p.G218G 0.42 TCGA-OD-A75X-06 6 30071154 30071154 C T TRIM31 3'UTR 0.44 TCGA-OD-A75X-06 6 30071155 30071155 C T TRIM31 3'UTR 0.43 TCGA-OD-A75X-06 6 30680705 30680705 G A MDC1 Silent p.I338I 0.42 TCGA-OD-A75X-06 6 31323289 31323289 G A HLA-B Missense_Mutation p.P234S 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-OD-A75X-06 6 31600107 31600107 C T PRRC2A Silent p.S1219S 0.21 TCGA-OD-A75X-06 6 31926872 31926872 G A SKIV2L 5'UTR 0.22 TCGA-OD-A75X-06 6 31940093 31940093 G A STK19 Missense_Mutation p.E79K 0.33 deleterious_low_confidence(0.02) benign(0.004) TCGA-OD-A75X-06 6 32026129 32026129 C T TNXB Missense_Mutation p.E2511K 0.35 probably_damaging(0.984) TCGA-OD-A75X-06 6 32183145 32183145 G T NOTCH4 Missense_Mutation p.P627T 0.17 tolerated(0.62) benign(0.11) TCGA-OD-A75X-06 6 32548590 32548590 G A HLA-DRB1 Silent p.V232V 0.27 TCGA-OD-A75X-06 6 32974474 32974474 G A HLA-DOA 3'UTR 0.17 TCGA-OD-A75X-06 6 33133751 33133751 C T COL11A2 Missense_Mutation p.G1394E 0.16 unknown(0) TCGA-OD-A75X-06 6 33154460 33154460 G A COL11A2 Missense_Mutation p.P248S 0.46 probably_damaging(0.994) TCGA-OD-A75X-06 6 33263448 33263448 G A RGL2 Missense_Mutation p.S286F 0.21 deleterious(0) probably_damaging(0.998) TCGA-OD-A75X-06 6 33290717 33290717 C T DAXX 5'UTR 0.41 TCGA-OD-A75X-06 6 33543609 33543609 G A BAK1 Missense_Mutation p.A56V 0.26 tolerated(0.56) benign(0.001) TCGA-OD-A75X-06 6 35280512 35280512 G A DEF6 Missense_Mutation p.R257K 0.09 tolerated(1) benign(0.017) TCGA-OD-A75X-06 6 35479494 35479494 C T TULP1 Missense_Mutation p.D94N 0.40 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-OD-A75X-06 6 35604865 35604865 C T FKBP5 Missense_Mutation p.G59E 0.22 deleterious(0) probably_damaging(0.997) TCGA-OD-A75X-06 6 35773582 35773582 C T LHFPL5 Silent p.I45I 0.36 TCGA-OD-A75X-06 6 35840461 35840461 G A SRPK1 Silent p.I210I 0.37 TCGA-OD-A75X-06 6 36334429 36334429 G A ETV7 Missense_Mutation p.S340F 0.23 deleterious(0) probably_damaging(0.991) TCGA-OD-A75X-06 6 36334487 36334487 G A ETV7 Missense_Mutation p.P321S 0.23 tolerated(0.09) benign(0.045) TCGA-OD-A75X-06 6 36995988 36995988 C T FGD2 3'UTR 0.56 TCGA-OD-A75X-06 6 37622203 37622203 G A MDGA1 Missense_Mutation p.H277Y 0.23 deleterious(0.02) probably_damaging(0.953) TCGA-OD-A75X-06 6 38819412 38819412 G A DNAH8 Missense_Mutation p.E1593K 0.32 probably_damaging(1) TCGA-OD-A75X-06 6 38899722 38899722 G A DNAH8 Missense_Mutation p.G3587R 0.36 probably_damaging(1) TCGA-OD-A75X-06 6 38997970 38997970 C A DNAH8 Silent p.L4425L 0.23 TCGA-OD-A75X-06 6 39895171 39895171 G A MOCS1 Silent p.F49F 0.15 TCGA-OD-A75X-06 6 4031811 4031811 T G PRPF4B Silent p.S20S 0.23 TCGA-OD-A75X-06 6 41248702 41248702 A T TREM1 Missense_Mutation p.I199N 0.29 tolerated(0.25) benign(0.005) TCGA-OD-A75X-06 6 41703930 41703930 C T TFEB 5'Flank 0.52 TCGA-OD-A75X-06 6 42227360 42227360 G A TRERF1 Silent p.F662F 0.22 TCGA-OD-A75X-06 6 42237412 42237412 G A TRERF1 5'UTR 0.17 TCGA-OD-A75X-06 6 44137169 44137169 C T CAPN11 Silent p.F80F 0.33 TCGA-OD-A75X-06 6 44221313 44221313 C T HSP90AB1 Missense_Mutation p.S718F 0.22 deleterious(0) benign(0.166) TCGA-OD-A75X-06 6 44221314 44221314 T C HSP90AB1 Silent p.S718S 0.21 TCGA-OD-A75X-06 6 44248076 44248076 C T TCTE1 Missense_Mutation p.E450K 0.19 tolerated(0.07) benign(0.094) TCGA-OD-A75X-06 6 46108835 46108835 G A ENPP4 Missense_Mutation p.M291I 0.25 deleterious(0.02) benign(0.007) TCGA-OD-A75X-06 6 47253710 47253710 C T TNFRSF21 Missense_Mutation p.E240K 0.39 tolerated(0.22) benign(0.015) TCGA-OD-A75X-06 6 49754437 49754437 G A PGK2 Missense_Mutation p.S155F 0.21 deleterious(0) probably_damaging(0.952) TCGA-OD-A75X-06 6 49802891 49802891 G A CRISP1 3'UTR 0.38 TCGA-OD-A75X-06 6 51612879 51612879 G A PKHD1 Missense_Mutation p.L3179F 0.42 deleterious(0) probably_damaging(1) TCGA-OD-A75X-06 6 52876952 52876952 G A ICK Missense_Mutation p.S409F 0.41 tolerated(0.21) benign(0.321) TCGA-OD-A75X-06 6 54735297 54735297 G A FAM83B Missense_Mutation p.D85N 0.45 tolerated(0.14) benign(0.232) TCGA-OD-A75X-06 6 55942356 55942356 G A COL21A1 Missense_Mutation p.P610S 0.50 tolerated(0.12) possibly_damaging(0.677) TCGA-OD-A75X-06 6 70071292 70071292 T C BAI3 Missense_Mutation p.L1376S 0.55 deleterious(0.03) probably_damaging(0.994) TCGA-OD-A75X-06 6 74078978 74078978 C T OOEP Silent p.K107K 0.35 TCGA-OD-A75X-06 6 74119003 74119003 G A DDX43 Missense_Mutation p.M404I 0.37 deleterious(0) possibly_damaging(0.789) TCGA-OD-A75X-06 6 74229070 74229070 C T EEF1A1 Missense_Mutation p.G105E 0.44 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-OD-A75X-06 6 84233841 84233841 G A PRSS35 Silent p.A227A 0.55 TCGA-OD-A75X-06 6 85446770 85446770 G A TBX18 Missense_Mutation p.S486F 0.47 deleterious(0.03) possibly_damaging(0.675) TCGA-OD-A75X-06 6 87725856 87725856 C T HTR1E Silent p.F268F 0.30 TCGA-OD-A75X-06 6 90642326 90642326 G A BACH2 Missense_Mutation p.P776L 0.44 tolerated(0.47) benign(0.031) TCGA-OD-A75X-06 7 100346061 100346061 G A ZAN Missense_Mutation p.G406D 0.31 possibly_damaging(0.539) TCGA-OD-A75X-06 7 100678057 100678057 C A MUC17 Silent p.T1120T 0.10 TCGA-OD-A75X-06 7 107415299 107415299 G A SLC26A3 Nonsense_Mutation p.R566* 0.41 TCGA-OD-A75X-06 7 107432324 107432324 G A SLC26A3 Silent p.F111F 0.43 TCGA-OD-A75X-06 7 107569953 107569953 C T LAMB1 Missense_Mutation p.R1550Q 0.39 deleterious(0.01) benign(0.087) TCGA-OD-A75X-06 7 114284782 114284782 C T FOXP2 Silent p.G369G 0.45 TCGA-OD-A75X-06 7 120387862 120387862 G A KCND2 Missense_Mutation p.E615K 0.49 tolerated_low_confidence(0.89) benign(0.005) TCGA-OD-A75X-06 7 120655783 120655783 C T CPED1 Missense_Mutation p.P105L 0.37 tolerated(0.09) benign(0.006) TCGA-OD-A75X-06 7 123302538 123302538 G A LMOD2 Missense_Mutation p.E300K 0.46 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 7 126882995 126882995 C T GRM8 Silent p.K88K 0.34 TCGA-OD-A75X-06 7 127239446 127239446 G A FSCN3 Missense_Mutation p.E378K 0.40 deleterious(0.02) possibly_damaging(0.852) TCGA-OD-A75X-06 7 128355442 128355442 G A FAM71F1 5'Flank 0.39 TCGA-OD-A75X-06 7 128484918 128484918 C T FLNC Silent p.I1133I 0.41 TCGA-OD-A75X-06 7 137206704 137206704 G A DGKI Missense_Mutation p.S719F 0.50 deleterious(0.01) possibly_damaging(0.851) TCGA-OD-A75X-06 7 137237241 137237241 G A DGKI Missense_Mutation p.S674F 0.36 deleterious(0) probably_damaging(0.914) TCGA-OD-A75X-06 7 137567225 137567225 G A CREB3L2 Missense_Mutation p.P474S 0.42 tolerated(0.2) benign(0.003) TCGA-OD-A75X-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-OD-A75X-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.44 deleterious(0) possibly_damaging(0.838) TCGA-OD-A75X-06 7 141618998 141618998 G A OR9A4 Missense_Mutation p.G108E 0.37 deleterious(0) probably_damaging(0.97) TCGA-OD-A75X-06 7 141722156 141722156 G A MGAM Missense_Mutation p.G267R 0.53 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 7 141736713 141736713 C T MGAM Silent p.L723L 0.42 TCGA-OD-A75X-06 7 141740567 141740567 C T MGAM Missense_Mutation p.P807S 0.54 deleterious(0.01) benign(0.067) TCGA-OD-A75X-06 7 141754666 141754666 C T MGAM Missense_Mutation p.P1091L 0.47 deleterious(0) possibly_damaging(0.835) TCGA-OD-A75X-06 7 141802458 141802458 G A MGAM Silent p.L1768L 0.47 TCGA-OD-A75X-06 7 141896542 141896542 G A RP11-1220K2.2 Missense_Mutation p.E1520K 0.50 possibly_damaging(0.881) TCGA-OD-A75X-06 7 142124391 142124391 G A TRBV6-8 Silent p.F29F 0.38 TCGA-OD-A75X-06 7 142326947 142326947 G A TRBV19 Missense_Mutation p.G82E 0.44 deleterious(0.04) probably_damaging(1) TCGA-OD-A75X-06 7 142622581 142622581 C T TRPV5 Intron 0.52 TCGA-OD-A75X-06 7 142881181 142881181 T C TAS2R39 Missense_Mutation p.F224L 0.46 deleterious(0.03) possibly_damaging(0.734) TCGA-OD-A75X-06 7 143018840 143018840 C T CLCN1 Missense_Mutation p.R199C 0.36 deleterious(0) probably_damaging(0.973) TCGA-OD-A75X-06 7 143018858 143018858 G A CLCN1 Missense_Mutation p.E205K 0.61 deleterious(0) probably_damaging(0.992) TCGA-OD-A75X-06 7 143057241 143057241 C T FAM131B Silent p.G10G 0.40 TCGA-OD-A75X-06 7 143400408 143400408 G A FAM115C Silent p.Q107Q 0.53 TCGA-OD-A75X-06 7 143771783 143771783 C T OR2A25 Silent p.V157V 0.44 TCGA-OD-A75X-06 7 143771784 143771784 C T OR2A25 Missense_Mutation p.H158Y 0.44 deleterious(0.01) probably_damaging(0.962) TCGA-OD-A75X-06 7 143955834 143955834 C T OR2A7 Silent p.V296V 0.23 TCGA-OD-A75X-06 7 144015757 144015757 C T OR2A1 Silent p.I180I 0.29 TCGA-OD-A75X-06 7 144062514 144062514 G A ARHGEF5 Missense_Mutation p.E918K 0.17 deleterious(0) benign(0.254) TCGA-OD-A75X-06 7 150174541 150174541 G A GIMAP8 Silent p.T557T 0.41 TCGA-OD-A75X-06 7 150324824 150324824 C T GIMAP6 Missense_Mutation p.G288R 0.46 tolerated(0.28) benign(0.012) TCGA-OD-A75X-06 7 150325190 150325190 C T GIMAP6 Missense_Mutation p.E166K 0.42 deleterious(0.03) probably_damaging(0.994) TCGA-OD-A75X-06 7 150327218 150327218 C T GIMAP6 Missense_Mutation p.E5K 0.39 tolerated(0.1) unknown(0) TCGA-OD-A75X-06 7 150697629 150697629 C T NOS3 Missense_Mutation p.S392F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-OD-A75X-06 7 151273500 151273500 G A PRKAG2 Silent p.V301V 0.47 TCGA-OD-A75X-06 7 152346416 152346416 T C XRCC2 Missense_Mutation p.T52A 0.48 tolerated(0.06) possibly_damaging(0.906) TCGA-OD-A75X-06 7 15651902 15651902 A C MEOX2 3'UTR 0.50 TCGA-OD-A75X-06 7 15651989 15651989 A G MEOX2 3'UTR 0.35 TCGA-OD-A75X-06 7 16744257 16744257 G A BZW2 Missense_Mutation p.M398I 0.46 deleterious(0.03) possibly_damaging(0.786) TCGA-OD-A75X-06 7 20198969 20198969 C A MACC1 Missense_Mutation p.D339Y 0.41 deleterious(0.02) probably_damaging(0.967) TCGA-OD-A75X-06 7 21826269 21826269 C T DNAH11 Missense_Mutation p.P3216S 0.43 probably_damaging(0.939) TCGA-OD-A75X-06 7 23555982 23555982 C T TRA2A Silent p.R112R 0.38 TCGA-OD-A75X-06 7 23825131 23825131 G A STK31 Missense_Mutation p.R728Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 7 34094868 34094868 C T BMPER Missense_Mutation p.P294S 0.44 tolerated(0.36) benign(0.021) TCGA-OD-A75X-06 7 34125558 34125558 C T BMPER Silent p.F533F 0.41 TCGA-OD-A75X-06 7 37936623 37936623 C T NME8 Missense_Mutation p.H566Y 0.43 deleterious(0.01) probably_damaging(1) TCGA-OD-A75X-06 7 47913603 47913603 C T PKD1L1 Missense_Mutation p.V1264I 0.48 tolerated(0.15) possibly_damaging(0.796) TCGA-OD-A75X-06 7 48311748 48311748 G A ABCA13 Missense_Mutation p.E829K 0.52 benign(0.063) TCGA-OD-A75X-06 7 48349628 48349628 G A ABCA13 Missense_Mutation p.E3136K 0.42 benign(0.114) TCGA-OD-A75X-06 7 51287473 51287473 A G COBL Silent p.P70P 0.20 TCGA-OD-A75X-06 7 53103861 53103861 C T POM121L12 Missense_Mutation p.A166V 0.46 tolerated(0.12) possibly_damaging(0.866) TCGA-OD-A75X-06 7 53103889 53103889 G A POM121L12 Silent p.R175R 0.50 TCGA-OD-A75X-06 7 56149894 56149894 C T PHKG1 Missense_Mutation p.M232I 0.36 deleterious(0.01) benign(0.248) TCGA-OD-A75X-06 7 6183809 6183809 C T USP42 Silent p.T324T 0.39 TCGA-OD-A75X-06 7 64023470 64023470 G A ZNF680 5'UTR 0.45 TCGA-OD-A75X-06 7 64601707 64601707 C T INTS4L1 RNA 0.50 TCGA-OD-A75X-06 7 64864515 64864515 T A ZNF92 Missense_Mutation p.F496L 0.45 tolerated(1) benign(0.003) TCGA-OD-A75X-06 7 70800616 70800616 G A WBSCR17 Missense_Mutation p.E107K 0.31 deleterious(0.03) probably_damaging(0.956) TCGA-OD-A75X-06 7 72685590 72685590 C T GTF2IRD2P1 RNA 0.41 TCGA-OD-A75X-06 7 73246094 73246094 G A CLDN4 Missense_Mutation p.R188H 0.46 tolerated(0.06) benign(0.002) TCGA-OD-A75X-06 7 73811452 73811452 C T CLIP2 Silent p.S923S 0.37 TCGA-OD-A75X-06 7 73811453 73811453 C T CLIP2 Missense_Mutation p.P924S 0.37 tolerated(0.8) benign(0.184) TCGA-OD-A75X-06 7 75933007 75933007 C T HSPB1 Intron 0.50 TCGA-OD-A75X-06 7 82579147 82579147 G A PCLO Missense_Mutation p.P3586L 0.31 unknown(0) TCGA-OD-A75X-06 7 82583815 82583815 C T PCLO Missense_Mutation p.E2152K 0.41 unknown(0) TCGA-OD-A75X-06 7 82764371 82764371 G A PCLO Missense_Mutation p.S832L 0.43 unknown(0) TCGA-OD-A75X-06 7 84642162 84642162 C T SEMA3D Silent p.R568R 0.48 TCGA-OD-A75X-06 7 84710896 84710896 C T SEMA3D Splice_Site p.X105_splice 0.43 TCGA-OD-A75X-06 7 86468435 86468435 A G GRM3 Silent p.E535E 0.41 TCGA-OD-A75X-06 7 86469000 86469000 G A GRM3 Missense_Mutation p.E724K 0.44 tolerated(0.88) benign(0.217) TCGA-OD-A75X-06 7 86537805 86537805 G A KIAA1324L Missense_Mutation p.P805L 0.36 deleterious(0.02) benign(0.085) TCGA-OD-A75X-06 7 87811352 87811352 C T ADAM22 Intron 0.41 TCGA-OD-A75X-06 7 87838680 87838680 C A SRI Missense_Mutation p.C162F 0.39 deleterious(0) probably_damaging(0.996) TCGA-OD-A75X-06 7 88423484 88423484 C T C7orf62 3'UTR 0.41 TCGA-OD-A75X-06 7 88966266 88966266 T C ZNF804B Missense_Mutation p.C1324R 0.50 tolerated(0.35) benign(0.048) TCGA-OD-A75X-06 7 89861844 89861844 G A STEAP2 Missense_Mutation p.R460Q 0.43 tolerated(0.2) benign(0.006) TCGA-OD-A75X-06 7 89901167 89901167 C T C7orf63 Missense_Mutation p.P252L 0.34 deleterious(0) probably_damaging(0.989) TCGA-OD-A75X-06 7 91631050 91631050 A G AKAP9 Missense_Mutation p.K607E 0.43 probably_damaging(0.999) TCGA-OD-A75X-06 7 91714203 91714203 C T AKAP9 Silent p.G2927G 0.41 TCGA-OD-A75X-06 7 92158880 92158880 T C RBM48 Silent p.L68L 0.40 TCGA-OD-A75X-06 7 93101730 93101730 G A CALCR Missense_Mutation p.S147F 0.37 deleterious(0) probably_damaging(0.918) TCGA-OD-A75X-06 7 94029571 94029571 G A COL1A2 Missense_Mutation p.G66S 0.57 unknown(0) TCGA-OD-A75X-06 7 97822244 97822244 G A LMTK2 Missense_Mutation p.E823K 0.38 tolerated(0.23) benign(0.005) TCGA-OD-A75X-06 7 99270229 99270229 A T CYP3A5 Missense_Mutation p.C98S 0.46 deleterious(0.02) benign(0.297) TCGA-OD-A75X-06 8 101624273 101624273 A G SNX31 Missense_Mutation p.L189P 0.59 deleterious(0) probably_damaging(0.968) TCGA-OD-A75X-06 8 104388112 104388112 G A CTHRC1 Silent p.E99E 0.43 TCGA-OD-A75X-06 8 104897710 104897710 G A RIMS2 Missense_Mutation p.D295N 0.42 tolerated_low_confidence(0.14) benign(0.155) TCGA-OD-A75X-06 8 108334292 108334292 C T ANGPT1 Missense_Mutation p.E214K 0.48 tolerated(0.46) benign(0.08) TCGA-OD-A75X-06 8 110453598 110453598 G A PKHD1L1 Silent p.G1398G 0.52 TCGA-OD-A75X-06 8 110527488 110527488 G A PKHD1L1 Nonsense_Mutation p.W3881* 0.38 TCGA-OD-A75X-06 8 110530694 110530694 G A PKHD1L1 Silent p.E3996E 0.47 TCGA-OD-A75X-06 8 116631994 116631994 G A TRPS1 Missense_Mutation p.P111S 0.40 deleterious_low_confidence(0.04) benign(0.003) TCGA-OD-A75X-06 8 11994905 11994905 G A USP17L2 Silent p.V455V 0.26 TCGA-OD-A75X-06 8 121209082 121209082 C T COL14A1 Silent p.V163V 0.42 TCGA-OD-A75X-06 8 121457598 121457598 G A MRPL13 5'UTR 0.58 TCGA-OD-A75X-06 8 125025915 125025915 C T FER1L6 Intron 0.50 TCGA-OD-A75X-06 8 125058037 125058037 G A FER1L6 Nonsense_Mutation p.W873* 0.46 TCGA-OD-A75X-06 8 130864455 130864455 G A FAM49B Missense_Mutation p.P196S 0.47 deleterious(0) probably_damaging(0.989) TCGA-OD-A75X-06 8 131848648 131848648 G A ADCY8 Silent p.F850F 0.49 TCGA-OD-A75X-06 8 131955666 131955666 C T ADCY8 Silent p.T428T 0.38 TCGA-OD-A75X-06 8 134232939 134232939 A C WISP1 Silent p.P155P 0.42 TCGA-OD-A75X-06 8 142186798 142186798 G A DENND3 Missense_Mutation p.D802N 0.44 tolerated(0.26) possibly_damaging(0.881) TCGA-OD-A75X-06 8 143996128 143996128 G A CYP11B2 Silent p.F264F 0.49 TCGA-OD-A75X-06 8 144943093 144943093 G A EPPK1 Silent p.D1443D 0.34 TCGA-OD-A75X-06 8 144946821 144946821 G A EPPK1 Missense_Mutation p.L201F 0.42 benign(0.003) TCGA-OD-A75X-06 8 15398068 15398068 G A TUSC3 Silent p.K43K 0.70 TCGA-OD-A75X-06 8 20022394 20022394 G A SLC18A1 Missense_Mutation p.P334L 0.89 deleterious(0.02) probably_damaging(0.969) TCGA-OD-A75X-06 8 22035147 22035147 C T BMP1 Intron 0.88 TCGA-OD-A75X-06 8 24774618 24774618 G A NEFM Missense_Mutation p.G417E 0.83 deleterious(0.01) unknown(0) TCGA-OD-A75X-06 8 30469831 30469831 G A GTF2E2 Silent p.S178S 0.72 TCGA-OD-A75X-06 8 30701013 30701013 C T TEX15 Missense_Mutation p.D1841N 0.80 tolerated(0.42) benign(0.403) TCGA-OD-A75X-06 8 30701292 30701292 G A TEX15 Nonsense_Mutation p.Q1748* 0.87 TCGA-OD-A75X-06 8 30702494 30702494 C T TEX15 Missense_Mutation p.G1347E 0.83 tolerated(1) benign(0.022) TCGA-OD-A75X-06 8 3081376 3081376 C T CSMD1 Silent p.G1453G 0.83 TCGA-OD-A75X-06 8 3256960 3256960 C T CSMD1 Nonsense_Mutation p.W786* 0.86 TCGA-OD-A75X-06 8 3432467 3432467 C A CSMD1 Missense_Mutation p.K448N 0.84 probably_damaging(0.99) TCGA-OD-A75X-06 8 37985811 37985811 C T ASH2L Missense_Mutation p.P390S 0.90 tolerated(0.07) possibly_damaging(0.791) TCGA-OD-A75X-06 8 38003836 38003836 C T STAR Missense_Mutation p.E146K 0.88 tolerated(0.15) benign(0.008) TCGA-OD-A75X-06 8 39780114 39780114 A G IDO1 Missense_Mutation p.K161E 0.81 deleterious(0.01) probably_damaging(0.979) TCGA-OD-A75X-06 8 48744443 48744443 T A PRKDC Missense_Mutation p.M2732L 0.44 benign(0) TCGA-OD-A75X-06 8 57228786 57228786 C T SDR16C5 Missense_Mutation p.E41K 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-OD-A75X-06 8 59851926 59851926 G A TOX Missense_Mutation p.P116S 0.52 tolerated(0.07) probably_damaging(0.979) TCGA-OD-A75X-06 8 61178537 61178537 C T CA8 Missense_Mutation p.E122K 0.39 tolerated(0.8) benign(0.138) TCGA-OD-A75X-06 8 62289219 62289219 G A CLVS1 Missense_Mutation p.E171K 0.45 deleterious(0) possibly_damaging(0.845) TCGA-OD-A75X-06 8 62566184 62566184 G A ASPH Missense_Mutation p.P120S 0.49 tolerated_low_confidence(0.28) benign(0.055) TCGA-OD-A75X-06 8 6302682 6302682 C T MCPH1 Missense_Mutation p.T480I 0.71 deleterious(0.03) possibly_damaging(0.648) TCGA-OD-A75X-06 8 63659497 63659497 G A NKAIN3 Missense_Mutation p.D94N 0.56 deleterious(0.02) probably_damaging(0.951) TCGA-OD-A75X-06 8 63936713 63936713 G A GGH Missense_Mutation p.P178S 0.39 deleterious(0.05) benign(0.373) TCGA-OD-A75X-06 8 65527784 65527784 G A CYP7B1 Missense_Mutation p.H286Y 0.47 deleterious(0.01) benign(0.284) TCGA-OD-A75X-06 8 67372616 67372616 C T ADHFE1 Silent p.F412F 0.41 TCGA-OD-A75X-06 8 68658323 68658323 G A CPA6 Silent p.F14F 0.43 TCGA-OD-A75X-06 8 68992704 68992704 G A PREX2 Missense_Mutation p.E557K 0.36 deleterious(0.03) possibly_damaging(0.6) TCGA-OD-A75X-06 8 72267064 72267064 C T EYA1 Missense_Mutation p.G26D 0.40 tolerated_low_confidence(1) benign(0.002) TCGA-OD-A75X-06 8 76456121 76456121 G A HNF4G Missense_Mutation p.R55K 0.41 tolerated(0.29) benign(0.252) TCGA-OD-A75X-06 8 76463644 76463644 G A HNF4G Missense_Mutation p.R125K 0.45 tolerated(0.09) benign(0.391) TCGA-OD-A75X-06 8 87520972 87520972 C T RMDN1 5'UTR 0.67 TCGA-OD-A75X-06 8 89058988 89058988 C T MMP16 Missense_Mutation p.M466I 0.42 tolerated(0.08) benign(0.004) TCGA-OD-A75X-06 8 93027027 93027027 G C RUNX1T1 Missense_Mutation p.S94C 0.36 deleterious(0) probably_damaging(0.95) TCGA-OD-A75X-06 8 94747176 94747176 G A RBM12B Missense_Mutation p.S488F 0.47 deleterious(0.03) probably_damaging(0.909) TCGA-OD-A75X-06 8 95511667 95511667 C T KIAA1429 Missense_Mutation p.D1389N 0.31 deleterious(0) possibly_damaging(0.762) TCGA-OD-A75X-06 8 95511668 95511668 C T KIAA1429 Silent p.K1388K 0.31 TCGA-OD-A75X-06 9 104449092 104449092 C T GRIN3A Missense_Mutation p.E364K 0.73 tolerated(0.22) benign(0.004) TCGA-OD-A75X-06 9 109687221 109687221 A G ZNF462 Missense_Mutation p.Y343C 0.92 possibly_damaging(0.759) TCGA-OD-A75X-06 9 113308503 113308503 C T SVEP1 Missense_Mutation p.D286N 0.91 benign(0.012) TCGA-OD-A75X-06 9 115946090 115946090 C T FKBP15 Silent p.K584K 0.90 TCGA-OD-A75X-06 9 125315495 125315495 G A OR1N2 Missense_Mutation p.G16E 0.86 tolerated(0.92) probably_damaging(0.998) TCGA-OD-A75X-06 9 125424653 125424653 G A OR1L1 Missense_Mutation p.R220K 0.85 tolerated(0.2) benign(0.125) TCGA-OD-A75X-06 9 125424775 125424775 C T OR1L1 Nonsense_Mutation p.Q261* 0.87 TCGA-OD-A75X-06 9 128111772 128111772 C T GAPVD1 Silent p.H1118H 0.87 TCGA-OD-A75X-06 9 129870544 129870544 G A ANGPTL2 Missense_Mutation p.S156F 0.84 deleterious(0.01) possibly_damaging(0.759) TCGA-OD-A75X-06 9 135042181 135042181 G A NTNG2 5'UTR 0.90 TCGA-OD-A75X-06 9 135945903 135945903 C T CEL Missense_Mutation p.P451S 0.76 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 9 137653805 137653805 C T COL5A1 Missense_Mutation p.P657L 0.83 probably_damaging(0.988) TCGA-OD-A75X-06 9 139290162 139290162 G A SNAPC4 Missense_Mutation p.P80S 0.89 tolerated(0.06) possibly_damaging(0.863) TCGA-OD-A75X-06 9 139290163 139290163 G A SNAPC4 Silent p.L79L 0.89 TCGA-OD-A75X-06 9 140137801 140137801 G T TUBB4B Silent p.L377L 0.87 TCGA-OD-A75X-06 9 140358908 140358908 C T PNPLA7 Missense_Mutation p.G1014S 0.87 tolerated(0.69) benign(0.098) TCGA-OD-A75X-06 9 140773521 140773521 G A CACNA1B Missense_Mutation p.M100I 0.11 deleterious(0.01) benign(0.017) TCGA-OD-A75X-06 9 20981651 20981651 G A FOCAD Missense_Mutation p.G1535E 0.79 tolerated(1) benign(0.004) TCGA-OD-A75X-06 9 32552489 32552489 G A TOPORS 5'UTR 0.90 TCGA-OD-A75X-06 9 32634732 32634732 C T TAF1L Silent p.R282R 0.86 TCGA-OD-A75X-06 9 3271119 3271119 C T RFX3 Splice_Site p.X363_splice 0.89 TCGA-OD-A75X-06 9 34343206 34343206 C T NUDT2 Missense_Mutation p.T71I 0.80 tolerated(0.28) benign(0.017) TCGA-OD-A75X-06 9 34623571 34623571 C T ARID3C Missense_Mutation p.G239E 0.77 deleterious(0.02) possibly_damaging(0.701) TCGA-OD-A75X-06 9 35547173 35547173 G A RUSC2 Missense_Mutation p.D219N 0.86 tolerated(0.42) probably_damaging(0.995) TCGA-OD-A75X-06 9 37762051 37762051 C T TRMT10B Silent p.I41I 0.86 TCGA-OD-A75X-06 9 73424964 73424964 G A TRPM3 Intron 0.89 TCGA-OD-A75X-06 9 74865811 74865811 A G GDA 3'Flank 0.81 TCGA-OD-A75X-06 9 77377180 77377180 C T TRPM6 Silent p.K1469K 0.93 TCGA-OD-A75X-06 9 95165590 95165590 C T OGN Missense_Mutation p.G34R 0.89 tolerated(0.2) benign(0.303) TCGA-OD-A75X-06 9 96081391 96081391 C T C9orf129 Missense_Mutation p.R144K 0.89 tolerated_low_confidence(0.17) benign(0.14) TCGA-OD-A75X-06 X 102529337 102529337 C T TCEAL5 Missense_Mutation p.G52E 0.89 tolerated(0.18) probably_damaging(0.982) TCGA-OD-A75X-06 X 106116851 106116851 C T TBC1D8B Missense_Mutation p.P1007S 0.96 tolerated(0.09) possibly_damaging(0.817) TCGA-OD-A75X-06 X 106116852 106116852 C T TBC1D8B Missense_Mutation p.P1007L 0.98 deleterious(0.03) probably_damaging(0.979) TCGA-OD-A75X-06 X 106768868 106768868 G A FRMPD3 Silent p.Q26Q 0.98 TCGA-OD-A75X-06 X 107911735 107911735 G A COL4A5 Splice_Site p.X1264_splice 0.92 TCGA-OD-A75X-06 X 117032749 117032749 C T KLHL13 3'UTR 0.94 TCGA-OD-A75X-06 X 123785911 123785911 C T TENM1 Missense_Mutation p.D478N 0.90 tolerated(0.34) benign(0.001) TCGA-OD-A75X-06 X 129201425 129201425 C T ELF4 Silent p.T421T 0.93 TCGA-OD-A75X-06 X 134993468 134993468 C T SAGE1 Missense_Mutation p.S708L 0.87 tolerated(0.14) possibly_damaging(0.721) TCGA-OD-A75X-06 X 135430955 135430955 C T GPR112 Missense_Mutation p.S1697L 0.91 deleterious(0.03) benign(0.252) TCGA-OD-A75X-06 X 138678842 138678842 C T MCF2 Missense_Mutation p.D791N 0.86 deleterious(0) possibly_damaging(0.573) TCGA-OD-A75X-06 X 139866349 139866349 C T CDR1 Silent p.T61T 0.87 TCGA-OD-A75X-06 X 150832782 150832782 G A PASD1 Missense_Mutation p.D345N 0.95 tolerated(0.16) possibly_damaging(0.534) TCGA-OD-A75X-06 X 150844625 150844625 C T PASD1 3'UTR 0.84 TCGA-OD-A75X-06 X 150869415 150869415 G A PRRG3 Silent p.E202E 0.90 TCGA-OD-A75X-06 X 153692027 153692027 G A PLXNA3 Missense_Mutation p.R514Q 0.89 tolerated(0.12) benign(0) TCGA-OD-A75X-06 X 18622845 18622845 C T CDKL5 Missense_Mutation p.P601S 0.87 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-OD-A75X-06 X 18622846 18622846 C T CDKL5 Missense_Mutation p.P601L 0.86 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-OD-A75X-06 X 18842119 18842119 C T PPEF1 Missense_Mutation p.S527L 0.90 tolerated(0.05) benign(0.006) TCGA-OD-A75X-06 X 21627600 21627600 T C CNKSR2 Missense_Mutation p.F853L 0.89 tolerated(1) benign(0) TCGA-OD-A75X-06 X 21875397 21875397 C T YY2 Silent p.F265F 0.90 TCGA-OD-A75X-06 X 24228975 24228975 C T ZFX Nonsense_Mutation p.Q634* 0.87 TCGA-OD-A75X-06 X 27766047 27766047 C T DCAF8L2 Silent p.T345T 0.77 TCGA-OD-A75X-06 X 27766345 27766345 G A DCAF8L2 Missense_Mutation p.D445N 0.86 deleterious(0) probably_damaging(0.999) TCGA-OD-A75X-06 X 30254404 30254404 C T MAGEB3 Silent p.F121F 0.88 TCGA-OD-A75X-06 X 3241070 3241070 C T MXRA5 Missense_Mutation p.E886K 0.83 tolerated(0.31) benign(0.016) TCGA-OD-A75X-06 X 3248173 3248173 G A MXRA5 Missense_Mutation p.P199S 0.90 tolerated(0.12) probably_damaging(0.965) TCGA-OD-A75X-06 X 34148365 34148365 C T FAM47A Silent p.R677R 0.92 TCGA-OD-A75X-06 X 41198333 41198333 A T DDX3X Nonsense_Mutation p.K50* 0.97 TCGA-OD-A75X-06 X 41524605 41524605 G A CASK Silent p.I211I 0.87 TCGA-OD-A75X-06 X 47516988 47516988 G A UXT Silent p.F89F 0.84 TCGA-OD-A75X-06 X 48687974 48687974 C T ERAS Silent p.V147V 0.96 TCGA-OD-A75X-06 X 50350844 50350844 G A SHROOM4 Missense_Mutation p.P1100S 0.88 deleterious(0.01) probably_damaging(0.998) TCGA-OD-A75X-06 X 6451953 6451953 C T VCX3A Missense_Mutation p.E132K 0.45 tolerated(0.1) unknown(0) TCGA-OD-A75X-06 X 69478348 69478348 C T P2RY4 3'UTR 0.86 TCGA-OD-A75X-06 X 71895930 71895930 C T PHKA1 Missense_Mutation p.G203E 0.91 deleterious(0) probably_damaging(0.995) TCGA-OD-A75X-06 X 73043595 73043595 C T XIST RNA 0.88 TCGA-OD-A75X-06 X 73641833 73641833 G T SLC16A2 Missense_Mutation p.V121F 0.93 tolerated(1) benign(0) TCGA-OD-A75X-06 X 78011008 78011008 C T LPAR4 Silent p.I214I 0.88 TCGA-OD-A75X-06 X 79947382 79947382 G A BRWD3 Missense_Mutation p.H1141Y 1.00 tolerated(0.72) benign(0.005) TCGA-OD-A75X-06 X 83129150 83129150 G A CYLC1 Silent p.K478K 0.95 TCGA-QB-A6FS-06 10 100150660 100150660 G A PYROXD2 Intron 0.35 TCGA-QB-A6FS-06 10 101370931 101370931 C T SLC25A28 Missense_Mutation p.R257K 0.23 tolerated(0.28) probably_damaging(0.983) TCGA-QB-A6FS-06 10 102541064 102541064 C T PAX2 Silent p.S186S 0.23 TCGA-QB-A6FS-06 10 102824068 102824068 G A KAZALD1 Missense_Mutation p.D188N 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-QB-A6FS-06 10 103552598 103552598 C T MGEA5 Missense_Mutation p.E725K 0.23 tolerated(0.17) benign(0.012) TCGA-QB-A6FS-06 10 105798285 105798285 C T COL17A1 Silent p.G983G 0.18 TCGA-QB-A6FS-06 10 105836056 105836056 T G COL17A1 Intron 0.12 TCGA-QB-A6FS-06 10 105836092 105836092 T G COL17A1 Silent p.R100R 0.14 TCGA-QB-A6FS-06 10 107005420 107005420 C A SORCS3 Missense_Mutation p.H997N 0.45 tolerated(0.25) benign(0.017) TCGA-QB-A6FS-06 10 107016580 107016580 C T SORCS3 Missense_Mutation p.P1114L 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-QB-A6FS-06 10 107022168 107022168 G A SORCS3 Missense_Mutation p.E1175K 0.46 deleterious(0.03) benign(0.099) TCGA-QB-A6FS-06 10 114136049 114136049 G A ACSL5 5'UTR 0.19 TCGA-QB-A6FS-06 10 114925411 114925411 C T TCF7L2 Missense_Mutation p.P497S 0.19 tolerated(1) probably_damaging(0.999) TCGA-QB-A6FS-06 10 114925695 114925695 C T TCF7L2 Silent p.P591P 0.17 TCGA-QB-A6FS-06 10 115351994 115351994 G A NRAP Missense_Mutation p.P1535S 0.11 tolerated(0.25) probably_damaging(0.999) TCGA-QB-A6FS-06 10 115384621 115384621 G A NRAP Silent p.F771F 0.28 TCGA-QB-A6FS-06 10 120914603 120914603 G A SFXN4 Silent p.L235L 0.22 TCGA-QB-A6FS-06 10 120914604 120914604 G A SFXN4 Silent p.V234V 0.23 TCGA-QB-A6FS-06 10 122618232 122618232 T C WDR11 Silent p.N92N 0.27 TCGA-QB-A6FS-06 10 124036432 124036432 G A BTBD16 Missense_Mutation p.E49K 0.21 tolerated(0.06) benign(0.031) TCGA-QB-A6FS-06 10 124358571 124358571 C A DMBT1 Missense_Mutation p.H1080N 0.19 deleterious(0.05) unknown(0) TCGA-QB-A6FS-06 10 126490351 126490351 G A FAM175B 5'Flank 0.24 TCGA-QB-A6FS-06 10 12867657 12867657 C T CAMK1D Missense_Mutation p.S336L 0.21 deleterious(0.04) benign(0.085) TCGA-QB-A6FS-06 10 129676500 129676500 G A CLRN3 Silent p.I198I 0.17 TCGA-QB-A6FS-06 10 129868614 129868614 G A PTPRE Missense_Mutation p.G398E 0.23 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 10 135350688 135350688 C T CYP2E1 Silent p.L363L 0.27 TCGA-QB-A6FS-06 10 1779406 1779406 C T ADARB2 5'UTR 0.23 TCGA-QB-A6FS-06 10 21101786 21101786 C T NEBL Silent p.R810R 0.19 TCGA-QB-A6FS-06 10 21120176 21120176 C T NEBL Missense_Mutation p.M540I 0.31 tolerated(0.6) benign(0.004) TCGA-QB-A6FS-06 10 21129740 21129740 C T NEBL Silent p.G422G 0.29 TCGA-QB-A6FS-06 10 22618474 22618474 C T BMI1 3'UTR 0.35 TCGA-QB-A6FS-06 10 24884069 24884069 G A ARHGAP21 Missense_Mutation p.R1255C 0.16 deleterious(0) probably_damaging(0.968) TCGA-QB-A6FS-06 10 25197464 25197464 G A PRTFDC1 Intron 0.21 TCGA-QB-A6FS-06 10 27366311 27366311 G A ANKRD26 Missense_Mutation p.P345S 0.29 tolerated(0.77) benign(0.02) TCGA-QB-A6FS-06 10 28233806 28233806 C T ARMC4 Missense_Mutation p.R491K 0.23 tolerated(0.1) benign(0.272) TCGA-QB-A6FS-06 10 28284054 28284054 C T ARMC4 Silent p.R6R 0.26 TCGA-QB-A6FS-06 10 28378750 28378750 G A MPP7 Missense_Mutation p.R325C 0.21 deleterious(0.02) probably_damaging(0.964) TCGA-QB-A6FS-06 10 33502473 33502473 G A NRP1 Silent p.L485L 0.28 TCGA-QB-A6FS-06 10 34558811 34558811 G A PARD3 Nonsense_Mutation p.R1068* 0.33 TCGA-QB-A6FS-06 10 43615054 43615054 G A RET Missense_Mutation p.G823E 0.24 tolerated(0.21) possibly_damaging(0.49) TCGA-QB-A6FS-06 10 45938942 45938942 G T ALOX5 Silent p.V510V 0.16 TCGA-QB-A6FS-06 10 47087479 47087479 C T NPY4R Silent p.V232V 0.14 TCGA-QB-A6FS-06 10 49658331 49658331 C T ARHGAP22 Missense_Mutation p.R630Q 0.35 tolerated(0.11) possibly_damaging(0.614) TCGA-QB-A6FS-06 10 50531996 50531996 C T C10orf71 Missense_Mutation p.P469L 0.14 tolerated(0.1) benign(0.086) TCGA-QB-A6FS-06 10 50854670 50854670 G A CHAT Missense_Mutation p.G411R 0.26 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 10 50964915 50964915 G A OGDHL Silent p.V94V 0.20 TCGA-QB-A6FS-06 10 52066965 52066965 G A SGMS1 Silent p.F393F 0.21 TCGA-QB-A6FS-06 10 52603882 52603882 C T A1CF Missense_Mutation p.E42K 0.26 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 10 61830697 61830697 G A ANK3 Silent p.V3314V 0.17 TCGA-QB-A6FS-06 10 61833195 61833195 C T ANK3 Missense_Mutation p.E2482K 0.28 probably_damaging(0.956) TCGA-QB-A6FS-06 10 67862928 67862928 C T CTNNA3 Missense_Mutation p.G655E 0.21 tolerated(0.19) unknown(0) TCGA-QB-A6FS-06 10 70645791 70645791 G A STOX1 Missense_Mutation p.D747N 0.26 deleterious(0.04) benign(0.085) TCGA-QB-A6FS-06 10 71005895 71005895 G A HKDC1 Silent p.K312K 0.29 TCGA-QB-A6FS-06 10 71007302 71007302 C T HKDC1 Silent p.L406L 0.24 TCGA-QB-A6FS-06 10 71176114 71176114 C T TACR2 5'UTR 0.12 TCGA-QB-A6FS-06 10 7269837 7269837 G A SFMBT2 Missense_Mutation p.P395S 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-QB-A6FS-06 10 73270718 73270718 C T CDH23-AS1 Intron 0.20 TCGA-QB-A6FS-06 10 73558935 73558935 C T CDH23 Silent p.A134A 0.21 TCGA-QB-A6FS-06 10 74631154 74631154 G A MCU Missense_Mutation p.R226K 0.19 tolerated(0.96) benign(0.036) TCGA-QB-A6FS-06 10 75557314 75557314 C T ZSWIM8 Missense_Mutation p.R1205W 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-QB-A6FS-06 10 75558041 75558041 G A ZSWIM8 Missense_Mutation p.D1336N 0.18 deleterious(0) probably_damaging(0.962) TCGA-QB-A6FS-06 10 75634154 75634154 C T CAMK2G Splice_Site p.X22_splice 0.23 TCGA-QB-A6FS-06 10 8115860 8115860 C T GATA3 Silent p.S403S 0.24 TCGA-QB-A6FS-06 10 85992449 85992449 C T LRIT1 Missense_Mutation p.G369E 0.12 tolerated(0.89) benign(0.002) TCGA-QB-A6FS-06 10 88466448 88466448 C T LDB3 Intron 0.18 TCGA-QB-A6FS-06 10 88703833 88703833 G A MMRN2 Silent p.F236F 0.17 TCGA-QB-A6FS-06 10 91195977 91195977 G A SLC16A12 Silent p.L376L 0.20 TCGA-QB-A6FS-06 10 95720248 95720248 G A PIPSL RNA 0.18 TCGA-QB-A6FS-06 10 95720249 95720249 G A PIPSL RNA 0.16 TCGA-QB-A6FS-06 10 96708988 96708988 G A CYP2C9 Missense_Mutation p.D256N 0.23 deleterious(0.03) benign(0.347) TCGA-QB-A6FS-06 10 96731866 96731866 G A CYP2C9 Silent p.K275K 0.23 TCGA-QB-A6FS-06 10 97772324 97772324 G A CC2D2B Silent p.Q52Q 0.21 TCGA-QB-A6FS-06 10 97779544 97779544 C T CC2D2B Missense_Mutation p.P248L 0.24 deleterious(0.04) probably_damaging(0.983) TCGA-QB-A6FS-06 10 99770919 99770919 C T CRTAC1 Missense_Mutation p.G67E 0.21 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 11 100168359 100168359 C T CNTN5 Missense_Mutation p.P773S 0.19 deleterious(0) probably_damaging(0.987) TCGA-QB-A6FS-06 11 104820330 104820330 G A CASP4 Missense_Mutation p.R241C 0.24 tolerated(0.13) benign(0.168) TCGA-QB-A6FS-06 11 104820331 104820331 G A CASP4 Silent p.N240N 0.23 TCGA-QB-A6FS-06 11 104896921 104896921 A G CASP1 3'UTR 0.33 TCGA-QB-A6FS-06 11 10622577 10622577 C T MRVI1 Silent p.V635V 0.16 TCGA-QB-A6FS-06 11 10647997 10647997 G A MRVI1 Missense_Mutation p.P295L 0.15 deleterious(0.02) benign(0.403) TCGA-QB-A6FS-06 11 111414666 111414666 G A LAYN Missense_Mutation p.G43E 0.32 tolerated(0.38) benign(0.027) TCGA-QB-A6FS-06 11 117061419 117061419 C A SIDT2 Nonsense_Mutation p.C566* 0.31 TCGA-QB-A6FS-06 11 118532174 118532174 C T TREH Missense_Mutation p.R221Q 0.25 deleterious(0) probably_damaging(0.958) TCGA-QB-A6FS-06 11 119991365 119991365 G A TRIM29 Missense_Mutation p.R482W 0.30 deleterious(0) probably_damaging(0.983) TCGA-QB-A6FS-06 11 120833322 120833322 G A GRIK4 Missense_Mutation p.R733Q 0.14 deleterious(0.04) possibly_damaging(0.608) TCGA-QB-A6FS-06 11 123516298 123516298 G A SCN3B Silent p.F72F 0.26 TCGA-QB-A6FS-06 11 123777236 123777236 G A OR8D4 Missense_Mutation p.G33E 0.25 tolerated(0.05) possibly_damaging(0.807) TCGA-QB-A6FS-06 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.31 tolerated(0.19) benign(0.224) TCGA-QB-A6FS-06 11 124180209 124180209 C T OR8D1 Missense_Mutation p.G152S 0.31 deleterious(0.04) probably_damaging(1) TCGA-QB-A6FS-06 11 124440185 124440185 C T OR8A1 Missense_Mutation p.T74I 0.18 deleterious(0.04) benign(0.078) TCGA-QB-A6FS-06 11 124620743 124620743 G A VSIG2 Silent p.P98P 0.26 TCGA-QB-A6FS-06 11 124620744 124620744 G A VSIG2 Missense_Mutation p.P98L 0.27 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 11 124767006 124767006 C T ROBO4 Missense_Mutation p.M74I 0.38 tolerated(0.08) benign(0.245) TCGA-QB-A6FS-06 11 129306709 129306709 C T BARX2 Missense_Mutation p.S84F 0.26 tolerated(0.16) possibly_damaging(0.553) TCGA-QB-A6FS-06 11 129306795 129306795 G A BARX2 Missense_Mutation p.G113S 0.26 tolerated(1) benign(0.01) TCGA-QB-A6FS-06 11 130331474 130331474 G A ADAMTS15 Missense_Mutation p.D350N 0.30 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 11 15212337 15212337 C T INSC Missense_Mutation p.P271S 0.25 tolerated(0.13) benign(0.048) TCGA-QB-A6FS-06 11 1856250 1856250 G A SYT8 Intron 0.27 TCGA-QB-A6FS-06 11 1857719 1857719 C T SYT8 Missense_Mutation p.S208L 0.21 tolerated(0.08) possibly_damaging(0.63) TCGA-QB-A6FS-06 11 19077333 19077333 A T MRGPRX2 Missense_Mutation p.L206Q 0.14 deleterious(0) probably_damaging(0.981) TCGA-QB-A6FS-06 11 19077647 19077647 G A MRGPRX2 Silent p.F101F 0.23 TCGA-QB-A6FS-06 11 1956077 1956077 C T TNNT3 Silent p.L203L 0.18 TCGA-QB-A6FS-06 11 20623061 20623061 G A SLC6A5 Silent p.G130G 0.10 TCGA-QB-A6FS-06 11 20940837 20940837 G A NELL1 Missense_Mutation p.G239E 0.17 tolerated(0.1) possibly_damaging(0.714) TCGA-QB-A6FS-06 11 22397561 22397561 T C SLC17A6 Missense_Mutation p.V403A 0.23 deleterious(0) benign(0.088) TCGA-QB-A6FS-06 11 31669308 31669308 G A ELP4 Missense_Mutation p.R316H 0.21 deleterious(0.01) benign(0.24) TCGA-QB-A6FS-06 11 33361035 33361035 C T HIPK3 Missense_Mutation p.P523L 0.28 deleterious(0) benign(0.347) TCGA-QB-A6FS-06 11 36597596 36597596 C T RAG1 Silent p.F914F 0.23 TCGA-QB-A6FS-06 11 3660081 3660081 G A ART5 Intron 0.24 TCGA-QB-A6FS-06 11 36614757 36614757 T C RAG2 Missense_Mutation p.N321S 0.23 tolerated(1) benign(0.004) TCGA-QB-A6FS-06 11 397559 397559 C T PKP3 Missense_Mutation p.P322L 0.16 deleterious(0.01) possibly_damaging(0.717) TCGA-QB-A6FS-06 11 40137207 40137207 G A LRRC4C Silent p.I212I 0.29 TCGA-QB-A6FS-06 11 43418303 43418303 G A TTC17 Nonsense_Mutation p.W236* 0.10 TCGA-QB-A6FS-06 11 4388918 4388918 G A OR52B4 Missense_Mutation p.S203F 0.24 tolerated(0.77) benign(0.002) TCGA-QB-A6FS-06 11 47303197 47303197 C T MADD Silent p.I454I 0.33 TCGA-QB-A6FS-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.10 TCGA-QB-A6FS-06 11 5011056 5011056 C T MMP26 Missense_Mutation p.S93L 0.17 tolerated(0.23) benign(0.001) TCGA-QB-A6FS-06 11 5021142 5021142 C T OR51L1 Silent p.V310V 0.29 TCGA-QB-A6FS-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.29 tolerated(0.65) benign(0.008) TCGA-QB-A6FS-06 11 5364769 5364769 G A OR51B5 5'UTR 0.28 TCGA-QB-A6FS-06 11 5462079 5462079 C T OR51I1 Silent p.L222L 0.16 TCGA-QB-A6FS-06 11 5475230 5475230 C T OR51I2 Missense_Mutation p.S171F 0.18 deleterious(0) probably_damaging(0.922) TCGA-QB-A6FS-06 11 55032625 55032625 C T TRIM48 Silent p.L98L 0.23 TCGA-QB-A6FS-06 11 55136248 55136248 A G OR4A15 Missense_Mutation p.K297E 0.21 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-QB-A6FS-06 11 55889867 55889867 G A OR8H3 Missense_Mutation p.D7N 0.23 tolerated(0.36) benign(0) TCGA-QB-A6FS-06 11 55927718 55927718 G A OR8K5 Missense_Mutation p.P26S 0.20 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-QB-A6FS-06 11 56000536 56000536 C T OR5T2 Missense_Mutation p.M42I 0.27 deleterious(0.03) benign(0.032) TCGA-QB-A6FS-06 11 56185432 56185432 G A OR5R1 Missense_Mutation p.P93S 0.16 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 11 57381937 57381937 C T SERPING1 Silent p.I462I 0.22 TCGA-QB-A6FS-06 11 5758566 5758566 G A OR56B1 Missense_Mutation p.E274K 0.20 tolerated(1) benign(0.008) TCGA-QB-A6FS-06 11 57996005 57996005 C T OR10Q1 Missense_Mutation p.D115N 0.19 deleterious(0.01) benign(0.242) TCGA-QB-A6FS-06 11 58035302 58035302 G A OR10W1 Missense_Mutation p.S10F 0.22 tolerated(0.15) benign(0.024) TCGA-QB-A6FS-06 11 58190555 58190555 G A OR5B2 Silent p.F60F 0.22 TCGA-QB-A6FS-06 11 58607126 58607126 C T GLYATL2 Splice_Site 0.15 TCGA-QB-A6FS-06 11 59420337 59420337 G A PATL1 Missense_Mutation p.P426S 0.21 deleterious(0) benign(0.396) TCGA-QB-A6FS-06 11 59599192 59599192 G C GIF Missense_Mutation p.T384R 0.22 deleterious(0) probably_damaging(0.977) TCGA-QB-A6FS-06 11 60183349 60183349 T A MS4A14 Missense_Mutation p.V336D 0.18 tolerated(0.12) benign(0.076) TCGA-QB-A6FS-06 11 60183350 60183350 T A MS4A14 Silent p.V336V 0.17 TCGA-QB-A6FS-06 11 6024114 6024114 G A OR56A4 Missense_Mutation p.L89F 0.25 deleterious(0.04) benign(0.169) TCGA-QB-A6FS-06 11 61094299 61094299 G A DDB1 Missense_Mutation p.P206S 0.16 tolerated(0.05) benign(0.07) TCGA-QB-A6FS-06 11 6232578 6232578 A T FAM160A2 3'UTR 0.33 TCGA-QB-A6FS-06 11 624595 624595 C T CDHR5 Missense_Mutation p.G75R 0.18 tolerated(0.06) benign(0.029) TCGA-QB-A6FS-06 11 63149688 63149688 C T SLC22A9 Silent p.L338L 0.23 TCGA-QB-A6FS-06 11 63884315 63884315 C T FLRT1 Silent p.I192I 0.22 TCGA-QB-A6FS-06 11 64807281 64807281 C T SNX15 3'UTR 0.31 TCGA-QB-A6FS-06 11 65618258 65618258 G A SNX32 Missense_Mutation p.G179R 0.29 tolerated(0.11) probably_damaging(0.921) TCGA-QB-A6FS-06 11 66192462 66192462 G A NPAS4 Missense_Mutation p.D701N 0.20 tolerated(0.13) benign(0.001) TCGA-QB-A6FS-06 11 6655519 6655519 C T DCHS1 Missense_Mutation p.D606N 0.23 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 11 6655520 6655520 C T DCHS1 Silent p.A605A 0.23 TCGA-QB-A6FS-06 11 66802139 66802139 G A SYT12 Missense_Mutation p.E20K 0.10 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-QB-A6FS-06 11 68115619 68115619 C T LRP5 Silent p.I132I 0.18 TCGA-QB-A6FS-06 11 68552399 68552399 A G CPT1A Silent p.H349H 0.18 TCGA-QB-A6FS-06 11 69972245 69972245 C T ANO1 Silent p.I347I 0.21 TCGA-QB-A6FS-06 11 7059828 7059828 C T NLRP14 Missense_Mutation p.S4L 0.27 tolerated(0.38) benign(0.007) TCGA-QB-A6FS-06 11 71259894 71259894 C T KRTAP5-9 Missense_Mutation p.S64F 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-QB-A6FS-06 11 71293281 71293281 G A KRTAP5-11 3'UTR 0.32 TCGA-QB-A6FS-06 11 72294536 72294536 A C PDE2A Missense_Mutation p.N558K 0.18 tolerated(0.51) benign(0.022) TCGA-QB-A6FS-06 11 74904576 74904576 C T SLCO2B1 Silent p.I463I 0.20 TCGA-QB-A6FS-06 11 75298246 75298246 G A MAP6 Missense_Mutation p.P767L 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QB-A6FS-06 11 76063411 76063411 G A PRKRIR Silent p.S261S 0.30 TCGA-QB-A6FS-06 11 76893017 76893017 G A MYO7A Silent p.R975R 0.18 TCGA-QB-A6FS-06 11 76912604 76912604 G A MYO7A Missense_Mutation p.R1655K 0.25 deleterious(0.03) benign(0.027) TCGA-QB-A6FS-06 11 770820 770820 G A PDDC1 3'UTR 0.19 TCGA-QB-A6FS-06 11 770821 770821 G A PDDC1 3'UTR 0.19 TCGA-QB-A6FS-06 11 7725274 7725274 C T OVCH2 Silent p.V87V 0.17 TCGA-QB-A6FS-06 11 7981578 7981578 C T NLRP10 Silent p.S527S 0.20 TCGA-QB-A6FS-06 11 92085636 92085636 G A FAT3 Missense_Mutation p.E120K 0.25 probably_damaging(0.998) TCGA-QB-A6FS-06 11 92531469 92531469 G A FAT3 Missense_Mutation p.D1764N 0.24 probably_damaging(1) TCGA-QB-A6FS-06 11 94134471 94134471 G A GPR83 5'UTR 0.32 TCGA-QB-A6FS-06 11 9457827 9457827 G A IPO7 Missense_Mutation p.G728R 0.13 tolerated(0.06) possibly_damaging(0.536) TCGA-QB-A6FS-06 11 99690358 99690358 G A CNTN5 Missense_Mutation p.G47S 0.15 tolerated_low_confidence(0.53) benign(0.001) TCGA-QB-A6FS-06 12 100200287 100200287 C T ANKS1B Missense_Mutation p.M188I 0.17 tolerated(0.08) benign(0.145) TCGA-QB-A6FS-06 12 100717410 100717410 C T SCYL2 Silent p.S501S 0.20 TCGA-QB-A6FS-06 12 101430917 101430917 C T ANO4 Missense_Mutation p.P261S 0.17 deleterious(0) probably_damaging(0.996) TCGA-QB-A6FS-06 12 105151081 105151081 G A CHST11 Missense_Mutation p.E187K 0.19 deleterious(0) probably_damaging(0.995) TCGA-QB-A6FS-06 12 10588010 10588010 C T KLRC2 Splice_Site p.X63_splice 0.10 TCGA-QB-A6FS-06 12 107237692 107237692 C T RIC8B Silent p.A376A 0.16 TCGA-QB-A6FS-06 12 10777392 10777392 C T STYK1 Missense_Mutation p.D262N 0.18 tolerated(0.51) probably_damaging(1) TCGA-QB-A6FS-06 12 10780308 10780308 C T STYK1 Missense_Mutation p.D217N 0.14 tolerated(0.09) benign(0.303) TCGA-QB-A6FS-06 12 110354579 110354579 C T TCHP 3'UTR 0.15 TCGA-QB-A6FS-06 12 111351114 111351114 C T MYL2 Missense_Mutation p.E97K 0.17 deleterious(0.03) probably_damaging(0.927) TCGA-QB-A6FS-06 12 111758031 111758031 G A CUX2 Missense_Mutation p.G740R 0.25 tolerated(0.35) possibly_damaging(0.467) TCGA-QB-A6FS-06 12 113355625 113355625 C T OAS1 Intron 0.32 TCGA-QB-A6FS-06 12 113633322 113633322 G A IQCD 3'UTR 0.33 TCGA-QB-A6FS-06 12 113821969 113821969 C T PLBD2 Silent p.P339P 0.26 TCGA-QB-A6FS-06 12 116429581 116429581 G A MED13L Missense_Mutation p.P1060S 0.19 deleterious(0.01) unknown(0) TCGA-QB-A6FS-06 12 117672446 117672446 G A NOS1 Silent p.I1087I 0.28 TCGA-QB-A6FS-06 12 122405975 122405975 C T WDR66 Missense_Mutation p.P891S 0.24 tolerated(0.07) benign(0.323) TCGA-QB-A6FS-06 12 123095385 123095385 C T KNTC1 Silent p.L1854L 0.22 TCGA-QB-A6FS-06 12 123200386 123200386 G A HCAR3 Missense_Mutation p.S300F 0.21 tolerated(0.11) possibly_damaging(0.73) TCGA-QB-A6FS-06 12 125292381 125292381 G A SCARB1 Missense_Mutation p.S312F 0.21 deleterious(0) probably_damaging(0.952) TCGA-QB-A6FS-06 12 125626755 125626755 C T AACS Missense_Mutation p.P667S 0.18 deleterious(0.05) possibly_damaging(0.87) TCGA-QB-A6FS-06 12 125626756 125626756 C T AACS Missense_Mutation p.P667L 0.17 deleterious(0) probably_damaging(0.935) TCGA-QB-A6FS-06 12 126138711 126138711 G A TMEM132B Missense_Mutation p.E898K 0.30 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 12 132400953 132400953 C T ULK1 Missense_Mutation p.S630F 0.17 deleterious(0) benign(0.094) TCGA-QB-A6FS-06 12 133219489 133219489 G A POLE Missense_Mutation p.P1549S 0.21 tolerated(0.65) benign(0.003) TCGA-QB-A6FS-06 12 133233743 133233743 G A POLE Silent p.F1187F 0.15 TCGA-QB-A6FS-06 12 13526231 13526231 C T C12orf36 Silent p.K108K 0.20 TCGA-QB-A6FS-06 12 13526360 13526360 C T C12orf36 Silent p.G65G 0.15 TCGA-QB-A6FS-06 12 13906490 13906490 G A GRIN2B Silent p.I257I 0.23 TCGA-QB-A6FS-06 12 14834333 14834333 C T GUCY2C Silent p.K230K 0.18 TCGA-QB-A6FS-06 12 176566 176566 C T IQSEC3 Missense_Mutation p.S173F 0.11 tolerated(0.09) benign(0.132) TCGA-QB-A6FS-06 12 18889240 18889240 C T PLCZ1 Missense_Mutation p.G17E 0.25 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 12 18891447 18891447 G A CAPZA3 Missense_Mutation p.R82Q 0.23 deleterious(0.03) probably_damaging(0.968) TCGA-QB-A6FS-06 12 19408035 19408035 A G PLEKHA5 Missense_Mutation p.N123S 0.27 tolerated(1) benign(0.027) TCGA-QB-A6FS-06 12 20790147 20790147 A C PDE3A Missense_Mutation p.R705S 0.25 tolerated(0.26) benign(0.011) TCGA-QB-A6FS-06 12 20896278 20896278 C T SLCO1C1 Silent p.I591I 0.16 TCGA-QB-A6FS-06 12 21715879 21715879 G A GYS2 Silent p.S345S 0.23 TCGA-QB-A6FS-06 12 2622102 2622102 G A CACNA1C Missense_Mutation p.D448N 0.26 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 12 2705076 2705076 G A CACNA1C Silent p.T900T 0.23 TCGA-QB-A6FS-06 12 2711109 2711109 C T CACNA1C Silent p.L1001L 0.28 TCGA-QB-A6FS-06 12 275031 275031 G A IQSEC3 Silent p.T982T 0.25 TCGA-QB-A6FS-06 12 30805971 30805971 G A IPO8 Silent p.S668S 0.18 TCGA-QB-A6FS-06 12 32137076 32137076 C T KIAA1551 Missense_Mutation p.P1063S 0.19 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 12 32137634 32137634 C T KIAA1551 Missense_Mutation p.P1249S 0.11 tolerated(0.36) benign(0.073) TCGA-QB-A6FS-06 12 33560226 33560226 C T SYT10 Missense_Mutation p.G192D 0.14 tolerated(0.57) benign(0.002) TCGA-QB-A6FS-06 12 33592401 33592401 G A SYT10 Silent p.I19I 0.22 TCGA-QB-A6FS-06 12 40001459 40001459 C T ABCD2 Missense_Mutation p.R393Q 0.21 deleterious(0) possibly_damaging(0.82) TCGA-QB-A6FS-06 12 41410561 41410561 G A CNTN1 Nonsense_Mutation p.W754* 0.14 TCGA-QB-A6FS-06 12 43862509 43862509 C T ADAMTS20 Splice_Site p.X373_splice 0.20 TCGA-QB-A6FS-06 12 44193227 44193227 C T TWF1 Missense_Mutation p.E153K 0.20 deleterious(0.01) possibly_damaging(0.74) TCGA-QB-A6FS-06 12 47172522 47172522 G A SLC38A4 Missense_Mutation p.P252L 0.19 deleterious(0.03) benign(0.389) TCGA-QB-A6FS-06 12 47472265 47472265 C T AMIGO2 Missense_Mutation p.G174E 0.17 tolerated(0.42) possibly_damaging(0.481) TCGA-QB-A6FS-06 12 47628926 47628926 G A PCED1B Missense_Mutation p.R27K 0.26 deleterious(0) probably_damaging(0.994) TCGA-QB-A6FS-06 12 4920518 4920518 C T KCNA6 Silent p.I437I 0.20 TCGA-QB-A6FS-06 12 49981429 49981429 C T FAM186B Missense_Mutation p.G881R 0.28 deleterious(0.02) benign(0.345) TCGA-QB-A6FS-06 12 50348049 50348049 G A AQP2 Missense_Mutation p.G158S 0.32 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 12 50471792 50471792 C T ASIC1 Missense_Mutation p.S240F 0.22 deleterious(0) probably_damaging(0.956) TCGA-QB-A6FS-06 12 50474461 50474461 C T ASIC1 Silent p.S462S 0.23 TCGA-QB-A6FS-06 12 52648148 52648148 C T KRT121P Intron 0.20 TCGA-QB-A6FS-06 12 52771866 52771866 G A KRT84 Silent p.S585S 0.26 TCGA-QB-A6FS-06 12 52863006 52863006 C T KRT6C Missense_Mutation p.G512E 0.29 deleterious(0) unknown(0) TCGA-QB-A6FS-06 12 53186570 53186570 C T KRT3 Missense_Mutation p.M316I 0.21 deleterious(0.02) benign(0.241) TCGA-QB-A6FS-06 12 54686568 54686568 G A NFE2 Missense_Mutation p.P238S 0.19 tolerated(0.05) possibly_damaging(0.612) TCGA-QB-A6FS-06 12 54915006 54915006 G A NCKAP1L Missense_Mutation p.R621Q 0.26 tolerated(0.29) possibly_damaging(0.548) TCGA-QB-A6FS-06 12 54920357 54920357 C T NCKAP1L Silent p.I734I 0.27 TCGA-QB-A6FS-06 12 54922088 54922088 C A NCKAP1L Silent p.A811A 0.21 TCGA-QB-A6FS-06 12 55759080 55759080 G A OR6C75 Silent p.R62R 0.22 TCGA-QB-A6FS-06 12 55820708 55820708 G A OR6C76 Missense_Mutation p.R224K 0.24 tolerated_low_confidence(1) benign(0.008) TCGA-QB-A6FS-06 12 56386058 56386058 C T RAB5B 3'UTR 0.47 TCGA-QB-A6FS-06 12 56847477 56847477 G A MIP Silent p.F141F 0.26 TCGA-QB-A6FS-06 12 57828946 57828946 G A INHBC Missense_Mutation p.E93K 0.34 tolerated(0.88) benign(0.008) TCGA-QB-A6FS-06 12 57864713 57864713 G A GLI1 Silent p.L730L 0.19 TCGA-QB-A6FS-06 12 58021583 58021583 C A B4GALNT1 Missense_Mutation p.S401I 0.20 tolerated(0.14) benign(0.228) TCGA-QB-A6FS-06 12 6644007 6644007 G A GAPDH Silent p.K3K 0.12 TCGA-QB-A6FS-06 12 6644008 6644008 G A GAPDH Missense_Mutation p.V4M 0.12 deleterious_low_confidence(0.02) benign(0.198) TCGA-QB-A6FS-06 12 68696643 68696643 G A MDM1 Missense_Mutation p.R577C 0.20 tolerated(0.1) probably_damaging(0.924) TCGA-QB-A6FS-06 12 6933591 6933591 G A GPR162 Missense_Mutation p.G176D 0.24 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 12 6935885 6935885 C T GPR162 Missense_Mutation p.S428F 0.24 deleterious(0.02) probably_damaging(0.962) TCGA-QB-A6FS-06 12 69652651 69652651 C T CPSF6 Missense_Mutation p.R326C 0.17 tolerated(0.2) unknown(0) TCGA-QB-A6FS-06 12 69764716 69764716 C T YEATS4 Missense_Mutation p.R159C 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-QB-A6FS-06 12 70070710 70070710 C T BEST3 Missense_Mutation p.A285T 0.18 deleterious(0.02) possibly_damaging(0.574) TCGA-QB-A6FS-06 12 78444685 78444685 C T NAV3 Silent p.S758S 0.31 TCGA-QB-A6FS-06 12 81528669 81528669 G A ACSS3 Missense_Mutation p.M177I 0.30 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 12 86373279 86373279 C T MGAT4C Missense_Mutation p.G409R 0.10 deleterious(0) probably_damaging(0.997) TCGA-QB-A6FS-06 12 8666233 8666233 G A CLEC4D 5'UTR 0.29 TCGA-QB-A6FS-06 12 8975204 8975204 G A A2ML1 5'UTR 0.19 TCGA-QB-A6FS-06 12 92537926 92537926 C A BTG1 Missense_Mutation p.C149F 0.24 deleterious(0) benign(0.047) TCGA-QB-A6FS-06 12 92537927 92537927 A C BTG1 Missense_Mutation p.C149G 0.24 deleterious(0.03) possibly_damaging(0.732) TCGA-QB-A6FS-06 12 93135309 93135309 G A PLEKHG7 Missense_Mutation p.D48N 0.17 tolerated(0.29) benign(0.005) TCGA-QB-A6FS-06 12 99548225 99548225 G A ANKS1B Intron 0.17 TCGA-QB-A6FS-06 12 99640237 99640237 G A ANKS1B Missense_Mutation p.S721L 0.28 deleterious(0.02) benign(0.253) TCGA-QB-A6FS-06 13 103698491 103698491 C T SLC10A2 Missense_Mutation p.E347K 0.37 tolerated(0.06) benign(0.006) TCGA-QB-A6FS-06 13 107823014 107823014 G A FAM155A Missense_Mutation p.S403L 0.18 tolerated(0.26) probably_damaging(0.927) TCGA-QB-A6FS-06 13 108922376 108922376 G A TNFSF13B Missense_Mutation p.G45R 0.24 deleterious(0) benign(0.019) TCGA-QB-A6FS-06 13 25026685 25026685 C T PARP4 Missense_Mutation p.R958Q 0.22 deleterious(0.05) possibly_damaging(0.49) TCGA-QB-A6FS-06 13 33739544 33739544 G A STARD13 Missense_Mutation p.P85S 0.21 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 13 35619164 35619164 C T NBEA Nonsense_Mutation p.R203* 0.19 TCGA-QB-A6FS-06 13 39425173 39425173 A T FREM2 Missense_Mutation p.S2224C 0.20 deleterious(0) possibly_damaging(0.514) TCGA-QB-A6FS-06 13 46288494 46288494 C T SPERT Missense_Mutation p.P445L 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QB-A6FS-06 13 58240625 58240625 C T PCDH17 Silent p.P863P 0.22 TCGA-QB-A6FS-06 13 95118854 95118854 G A DCT Silent p.T218T 0.19 TCGA-QB-A6FS-06 13 95118855 95118855 G A DCT Missense_Mutation p.T218I 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-QB-A6FS-06 14 101453438 101453438 G A SNORD114-26 RNA 0.17 TCGA-QB-A6FS-06 14 101493169 101493169 G A MIR329-1 RNA 0.18 TCGA-QB-A6FS-06 14 105353778 105353778 C T CEP170B Missense_Mutation p.P1068S 0.12 tolerated(0.26) benign(0.02) TCGA-QB-A6FS-06 14 105409245 105409245 G A AHNAK2 Silent p.L4181L 0.21 TCGA-QB-A6FS-06 14 105418443 105418443 C T AHNAK2 Silent p.A1115A 0.23 TCGA-QB-A6FS-06 14 105477976 105477976 G A CDCA4 Silent p.S97S 0.21 TCGA-QB-A6FS-06 14 106054550 106054550 C T IGHA2 Silent p.G61G 0.27 TCGA-QB-A6FS-06 14 106067995 106067995 G A IGHE Missense_Mutation p.S24F 0.20 tolerated(0.17) benign(0.09) TCGA-QB-A6FS-06 14 106691750 106691750 C T IGHV3-21 Missense_Mutation p.D92N 0.20 deleterious_low_confidence(0.01) benign(0.433) TCGA-QB-A6FS-06 14 106963063 106963063 G A IGHV1-45 Silent p.F73F 0.19 TCGA-QB-A6FS-06 14 107282999 107282999 G A IGHV7-81 Silent p.F48F 0.21 TCGA-QB-A6FS-06 14 20248603 20248603 G A OR4M1 Missense_Mutation p.G41E 0.12 deleterious(0) possibly_damaging(0.659) TCGA-QB-A6FS-06 14 20296074 20296074 C T OR4N2 Missense_Mutation p.S156F 0.10 deleterious(0) possibly_damaging(0.849) TCGA-QB-A6FS-06 14 21822664 21822664 G A SUPT16H Missense_Mutation p.S899F 0.16 deleterious(0) probably_damaging(0.993) TCGA-QB-A6FS-06 14 22038238 22038238 G A OR10G3 Missense_Mutation p.S213F 0.21 tolerated(0.36) benign(0.008) TCGA-QB-A6FS-06 14 22616497 22616497 A G TRAV27 Missense_Mutation p.T80A 0.34 tolerated(0.12) benign(0.038) TCGA-QB-A6FS-06 14 22675459 22675459 G A TRAV34 Silent p.G10G 0.24 TCGA-QB-A6FS-06 14 23242856 23242856 C T SLC7A7 Missense_Mutation p.G500E 0.18 tolerated(1) benign(0) TCGA-QB-A6FS-06 14 23282240 23282240 G A SLC7A7 Missense_Mutation p.S123F 0.25 deleterious(0) probably_damaging(0.995) TCGA-QB-A6FS-06 14 23517517 23517517 G A CDH24 Missense_Mutation p.P711L 0.20 tolerated(0.28) benign(0.006) TCGA-QB-A6FS-06 14 24655657 24655657 C T IPO4 Missense_Mutation p.A281T 0.24 tolerated(0.27) benign(0.241) TCGA-QB-A6FS-06 14 24655658 24655658 C T IPO4 Splice_Site p.X281_splice 0.24 TCGA-QB-A6FS-06 14 24711590 24711590 G A TINF2 5'UTR 0.26 TCGA-QB-A6FS-06 14 24793396 24793396 G A ADCY4 Silent p.L640L 0.21 TCGA-QB-A6FS-06 14 30095735 30095735 G A PRKD1 Missense_Mutation p.P585S 0.18 tolerated(0.13) benign(0.34) TCGA-QB-A6FS-06 14 37194854 37194854 C T SLC25A21 Missense_Mutation p.G120E 0.20 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 14 51210213 51210213 G C NIN Missense_Mutation p.A1741G 0.17 tolerated(0.19) benign(0.308) TCGA-QB-A6FS-06 14 53185031 53185031 C T PSMC6 Nonsense_Mutation p.Q240* 0.10 TCGA-QB-A6FS-06 14 62463005 62463005 C T SYT16 Missense_Mutation p.H90Y 0.16 tolerated_low_confidence(0.25) possibly_damaging(0.659) TCGA-QB-A6FS-06 14 65249232 65249232 C T SPTB Missense_Mutation p.A1348T 0.14 tolerated(0.34) benign(0.005) TCGA-QB-A6FS-06 14 70839802 70839802 G A SYNJ2BP Missense_Mutation p.P115L 0.31 deleterious(0) benign(0.02) TCGA-QB-A6FS-06 14 72055301 72055301 C T SIPA1L1 Missense_Mutation p.P238S 0.23 tolerated(0.83) benign(0.002) TCGA-QB-A6FS-06 14 72961922 72961922 C T RGS6 Missense_Mutation p.S306F 0.16 deleterious(0) probably_damaging(0.954) TCGA-QB-A6FS-06 14 78374167 78374167 C T ADCK1 Silent p.L255L 0.42 TCGA-QB-A6FS-06 14 86087990 86087990 G A FLRT2 Silent p.R44R 0.22 TCGA-QB-A6FS-06 14 88729662 88729662 G A KCNK10 Missense_Mutation p.R96W 0.17 deleterious(0.04) possibly_damaging(0.852) TCGA-QB-A6FS-06 14 89171280 89171280 C T EML5 Missense_Mutation p.E659K 0.12 tolerated(0.31) benign(0.042) TCGA-QB-A6FS-06 14 94156635 94156635 C T UNC79 Missense_Mutation p.P2282S 0.22 tolerated(0.13) benign(0.094) TCGA-QB-A6FS-06 14 94847429 94847429 G A SERPINA1 Silent p.F232F 0.24 TCGA-QB-A6FS-06 14 94933529 94933529 G A SERPINA9 Silent p.L291L 0.26 TCGA-QB-A6FS-06 14 94935965 94935965 G A SERPINA9 Silent p.S89S 0.24 TCGA-QB-A6FS-06 14 95033382 95033382 G A SERPINA4 Missense_Mutation p.R242Q 0.31 tolerated(0.25) benign(0.005) TCGA-QB-A6FS-06 14 95033383 95033383 G A SERPINA4 Silent p.R242R 0.32 TCGA-QB-A6FS-06 14 96707465 96707465 G A BDKRB2 Missense_Mutation p.R267K 0.17 tolerated(1) benign(0.01) TCGA-QB-A6FS-06 14 96795092 96795092 G A ATG2B Silent p.F631F 0.10 TCGA-QB-A6FS-06 14 99183532 99183532 C T C14orf177 Missense_Mutation p.S100L 0.17 tolerated_low_confidence(1) benign(0) TCGA-QB-A6FS-06 14 99640787 99640787 C T BCL11B Missense_Mutation p.D796N 0.21 deleterious(0) benign(0.053) TCGA-QB-A6FS-06 15 101718472 101718472 G A CHSY1 Silent p.S510S 0.25 TCGA-QB-A6FS-06 15 102182638 102182638 G A TM2D3 3'UTR 0.17 TCGA-QB-A6FS-06 15 102182639 102182639 G A TM2D3 3'UTR 0.16 TCGA-QB-A6FS-06 15 22332530 22332530 G A RP11-69H14.6 RNA 0.19 TCGA-QB-A6FS-06 15 22709094 22709094 C T AC116165.1 5'Flank 0.06 TCGA-QB-A6FS-06 15 24921522 24921522 G A NPAP1 Missense_Mutation p.E170K 0.29 tolerated(0.38) benign(0.004) TCGA-QB-A6FS-06 15 24922164 24922164 G A NPAP1 Missense_Mutation p.D384N 0.26 tolerated(0.22) benign(0.206) TCGA-QB-A6FS-06 15 24923763 24923763 G A NPAP1 Missense_Mutation p.G917R 0.20 tolerated(0.15) possibly_damaging(0.86) TCGA-QB-A6FS-06 15 24923764 24923764 G A NPAP1 Missense_Mutation p.G917E 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-QB-A6FS-06 15 25427460 25427460 C T SNORD115-6 3'Flank 0.15 TCGA-QB-A6FS-06 15 33905432 33905432 C T RYR3 Missense_Mutation p.S738L 0.11 probably_damaging(0.99) TCGA-QB-A6FS-06 15 33916057 33916057 C G RYR3 Missense_Mutation p.P803A 0.16 probably_damaging(0.998) TCGA-QB-A6FS-06 15 33916058 33916058 C T RYR3 Missense_Mutation p.P803L 0.17 probably_damaging(0.999) TCGA-QB-A6FS-06 15 33927861 33927861 C T RYR3 Silent p.F1074F 0.24 TCGA-QB-A6FS-06 15 33927862 33927862 C T RYR3 Missense_Mutation p.R1075W 0.24 probably_damaging(0.999) TCGA-QB-A6FS-06 15 40591077 40591077 G A PLCB2 Silent p.L258L 0.18 TCGA-QB-A6FS-06 15 41192313 41192313 T C VPS18 Missense_Mutation p.C433R 0.24 tolerated(0.23) benign(0.016) TCGA-QB-A6FS-06 15 41476254 41476254 C T EXD1 Missense_Mutation p.E474K 0.21 tolerated_low_confidence(0.11) benign(0.076) TCGA-QB-A6FS-06 15 43571422 43571422 C T TGM7 Missense_Mutation p.D578N 0.26 deleterious(0.03) possibly_damaging(0.828) TCGA-QB-A6FS-06 15 43571423 43571423 C T TGM7 Silent p.T577T 0.26 TCGA-QB-A6FS-06 15 43749343 43749343 G A TP53BP1 Missense_Mutation p.S488L 0.19 tolerated(0.17) possibly_damaging(0.517) TCGA-QB-A6FS-06 15 43813627 43813627 G A MAP1A 5'UTR 0.20 TCGA-QB-A6FS-06 15 45706829 45706829 A T SPATA5L1 Nonsense_Mutation p.K499* 0.18 TCGA-QB-A6FS-06 15 50535102 50535102 G A HDC Silent p.F448F 0.20 TCGA-QB-A6FS-06 15 51504567 51504567 C T CYP19A1 Missense_Mutation p.E405K 0.15 deleterious(0) possibly_damaging(0.772) TCGA-QB-A6FS-06 15 51507363 51507363 C T CYP19A1 Missense_Mutation p.D309N 0.22 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 15 66180253 66180253 C T RAB11A 3'UTR 0.15 TCGA-QB-A6FS-06 15 66250032 66250032 G A MEGF11 Silent p.T380T 0.18 TCGA-QB-A6FS-06 15 66840939 66840939 G A LCTL Silent p.P531P 0.23 TCGA-QB-A6FS-06 15 66845596 66845596 C T LCTL Missense_Mutation p.G308E 0.22 tolerated(0.14) probably_damaging(0.956) TCGA-QB-A6FS-06 15 71197007 71197007 C T LRRC49 Missense_Mutation p.S143L 0.18 tolerated(0.07) benign(0.001) TCGA-QB-A6FS-06 15 72057460 72057460 C T THSD4 Silent p.F897F 0.19 TCGA-QB-A6FS-06 15 72193564 72193564 G A MYO9A Missense_Mutation p.L1040F 0.25 deleterious(0) possibly_damaging(0.866) TCGA-QB-A6FS-06 15 72193565 72193565 G A MYO9A Silent p.F1039F 0.25 TCGA-QB-A6FS-06 15 74326911 74326911 C T PML Intron 0.24 TCGA-QB-A6FS-06 15 74625132 74625132 G A CCDC33 Silent p.L628L 0.20 TCGA-QB-A6FS-06 15 74741550 74741550 G A UBL7 Missense_Mutation p.H287Y 0.11 tolerated(0.11) probably_damaging(0.954) TCGA-QB-A6FS-06 15 75118038 75118038 C T LMAN1L 3'UTR 0.16 TCGA-QB-A6FS-06 15 75651148 75651148 C T MAN2C1 Missense_Mutation p.E732K 0.21 deleterious(0.01) benign(0.248) TCGA-QB-A6FS-06 15 75651149 75651149 C T MAN2C1 Silent p.R731R 0.20 TCGA-QB-A6FS-06 15 76629186 76629186 G A ISL2 5'UTR 0.21 TCGA-QB-A6FS-06 15 78921495 78921495 C T CHRNB4 Silent p.G384G 0.24 TCGA-QB-A6FS-06 15 81637125 81637125 C T TMC3 Nonsense_Mutation p.W500* 0.24 TCGA-QB-A6FS-06 15 85478742 85478742 G A SLC28A1 Nonsense_Mutation p.W525* 0.22 TCGA-QB-A6FS-06 15 89401968 89401968 C T ACAN Missense_Mutation p.S2051F 0.21 tolerated(0.12) probably_damaging(0.961) TCGA-QB-A6FS-06 15 89402120 89402120 G A ACAN Missense_Mutation p.E2102K 0.19 deleterious(0.02) benign(0.241) TCGA-QB-A6FS-06 15 90378804 90378804 C T C15orf38-AP3S2 Silent p.R376R 0.25 TCGA-QB-A6FS-06 15 91578389 91578389 C T AC068831.10 RNA 0.22 TCGA-QB-A6FS-06 15 91795187 91795187 G A SV2B Missense_Mutation p.G197E 0.24 deleterious(0.01) benign(0.424) TCGA-QB-A6FS-06 16 1260795 1260795 C T CACNA1H Silent p.A1349A 0.19 TCGA-QB-A6FS-06 16 1270918 1270918 C T CACNA1H Missense_Mutation p.P2329L 0.28 tolerated_low_confidence(0.15) benign(0.011) TCGA-QB-A6FS-06 16 14029594 14029594 C T ERCC4 Missense_Mutation p.P602L 0.19 deleterious(0.03) possibly_damaging(0.855) TCGA-QB-A6FS-06 16 15829430 15829430 T C MYH11 Missense_Mutation p.D1107G 0.17 benign(0.061) TCGA-QB-A6FS-06 16 16255422 16255422 C T ABCC6 Splice_Site p.X1169_splice 0.23 TCGA-QB-A6FS-06 16 19126642 19126642 C T ITPRIPL2 Missense_Mutation p.P287S 0.19 tolerated(0.5) probably_damaging(0.968) TCGA-QB-A6FS-06 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.29 deleterious(0.03) benign(0.001) TCGA-QB-A6FS-06 16 1996690 1996690 C T RPL3L Missense_Mutation p.G296E 0.25 deleterious(0) possibly_damaging(0.76) TCGA-QB-A6FS-06 16 20043849 20043849 G A GPR139 Silent p.F90F 0.20 TCGA-QB-A6FS-06 16 20328586 20328586 G A GP2 Silent p.F458F 0.28 TCGA-QB-A6FS-06 16 20335338 20335338 C T GP2 Missense_Mutation p.R112Q 0.31 deleterious(0.03) benign(0.271) TCGA-QB-A6FS-06 16 20480968 20480968 C T ACSM2A Missense_Mutation p.P175S 0.22 deleterious(0.05) benign(0.386) TCGA-QB-A6FS-06 16 20559409 20559409 C T ACSM2B Missense_Mutation p.R358Q 0.27 deleterious(0.04) benign(0.063) TCGA-QB-A6FS-06 16 227324 227324 C T HBA1 Missense_Mutation p.P115S 0.22 deleterious(0.03) benign(0.012) TCGA-QB-A6FS-06 16 23504719 23504719 G A GGA2 Missense_Mutation p.R105C 0.22 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 16 23540859 23540859 G A EARS2 Missense_Mutation p.S439L 0.21 tolerated(0.12) benign(0.035) TCGA-QB-A6FS-06 16 23672551 23672551 C T DCTN5 Silent p.V99V 0.17 TCGA-QB-A6FS-06 16 24578687 24578687 C T RBBP6 Missense_Mutation p.P605S 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-QB-A6FS-06 16 26147284 26147284 G A HS3ST4 Silent p.V362V 0.14 TCGA-QB-A6FS-06 16 28509528 28509528 G A APOBR Missense_Mutation p.E1028K 0.22 tolerated(0.06) unknown(0) TCGA-QB-A6FS-06 16 29853296 29853296 C T MVP Silent p.S499S 0.20 TCGA-QB-A6FS-06 16 30198041 30198041 G A CORO1A Missense_Mutation p.M107I 0.38 deleterious(0.05) possibly_damaging(0.491) TCGA-QB-A6FS-06 16 3274321 3274321 A C ZNF200 Silent p.T253T 0.23 TCGA-QB-A6FS-06 16 4245657 4245657 G A SRL Silent p.F169F 0.26 TCGA-QB-A6FS-06 16 4412714 4412714 G A CORO7 Missense_Mutation p.S434L 0.24 tolerated(0.18) benign(0.005) TCGA-QB-A6FS-06 16 51171321 51171321 C T SALL1 Missense_Mutation p.G1226E 0.30 tolerated(0.06) possibly_damaging(0.797) TCGA-QB-A6FS-06 16 57071176 57071176 C T NLRC5 Silent p.T927T 0.20 TCGA-QB-A6FS-06 16 597450 597450 C T CAPN15 Silent p.L204L 0.28 TCGA-QB-A6FS-06 16 597451 597451 C T CAPN15 Missense_Mutation p.P205S 0.28 tolerated(0.64) benign(0.013) TCGA-QB-A6FS-06 16 67271590 67271590 G T FHOD1 Missense_Mutation p.R242S 0.31 tolerated(0.35) benign(0.002) TCGA-QB-A6FS-06 16 68405878 68405878 G A SMPD3 Silent p.A69A 0.11 TCGA-QB-A6FS-06 16 69404473 69404473 G A TERF2 Silent p.I209I 0.24 TCGA-QB-A6FS-06 16 70942628 70942628 C T HYDIN Missense_Mutation p.G2714E 0.24 probably_damaging(0.988) TCGA-QB-A6FS-06 16 74670390 74670390 G A RFWD3 Missense_Mutation p.S427F 0.25 deleterious(0.04) benign(0.046) TCGA-QB-A6FS-06 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.18 TCGA-QB-A6FS-06 16 76501376 76501376 G A CNTNAP4 Silent p.G464G 0.30 TCGA-QB-A6FS-06 16 77375683 77375683 G A ADAMTS18 Missense_Mutation p.S543L 0.38 deleterious(0) benign(0.41) TCGA-QB-A6FS-06 16 88705001 88705001 G A IL17C 5'UTR 0.23 TCGA-QB-A6FS-06 16 9857846 9857846 T C GRIN2A Silent p.K1185K 0.19 TCGA-QB-A6FS-06 17 10307662 10307662 T C MYH8 Silent p.Q891Q 0.27 TCGA-QB-A6FS-06 17 10310211 10310211 G A MYH8 Missense_Mutation p.P684L 0.14 deleterious(0) benign(0.141) TCGA-QB-A6FS-06 17 10317785 10317785 G A MYH8 Silent p.S274S 0.22 TCGA-QB-A6FS-06 17 10351212 10351212 C T MYH4 Missense_Mutation p.E1630K 0.23 deleterious(0) possibly_damaging(0.84) TCGA-QB-A6FS-06 17 10401166 10401166 G A MYH1 Missense_Mutation p.S1417F 0.23 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 17 10430053 10430053 C T MYH2 Silent p.R1350R 0.19 TCGA-QB-A6FS-06 17 10433055 10433055 C T MYH2 Silent p.V981V 0.25 TCGA-QB-A6FS-06 17 10435015 10435015 C T MYH2 Missense_Mutation p.E878K 0.17 deleterious(0.03) possibly_damaging(0.562) TCGA-QB-A6FS-06 17 10532971 10532971 G A MYH3 Silent p.I1913I 0.22 TCGA-QB-A6FS-06 17 1372852 1372852 C T MYO1C Silent p.R861R 0.27 TCGA-QB-A6FS-06 17 13980118 13980118 C T COX10 Missense_Mutation p.P82S 0.19 tolerated_low_confidence(0.34) benign(0.009) TCGA-QB-A6FS-06 17 16470905 16470905 G A ZNF287 Silent p.T47T 0.17 TCGA-QB-A6FS-06 17 16470906 16470906 G A ZNF287 Missense_Mutation p.T47I 0.17 tolerated(0.46) possibly_damaging(0.73) TCGA-QB-A6FS-06 17 16722240 16722240 G A AC022596.6 RNA 0.19 TCGA-QB-A6FS-06 17 16722940 16722940 C T AC022596.6 Intron 0.11 TCGA-QB-A6FS-06 17 18167901 18167901 C T MIEF2 Silent p.A407A 0.17 TCGA-QB-A6FS-06 17 18194300 18194300 G A TOP3A Silent p.F441F 0.23 TCGA-QB-A6FS-06 17 18785943 18785943 C T PRPSAP2 Missense_Mutation p.P159S 0.20 deleterious(0) possibly_damaging(0.889) TCGA-QB-A6FS-06 17 18881490 18881490 C T FAM83G Missense_Mutation p.D497N 0.27 tolerated(0.13) benign(0.001) TCGA-QB-A6FS-06 17 21094340 21094340 G A DHRS7B Silent p.K284K 0.21 TCGA-QB-A6FS-06 17 26821419 26821419 G A SLC13A2 Silent p.G448G 0.20 TCGA-QB-A6FS-06 17 27075074 27075074 C T TRAF4 Missense_Mutation p.P114S 0.16 tolerated(0.19) benign(0.241) TCGA-QB-A6FS-06 17 27240231 27240231 G A PHF12 Missense_Mutation p.P453L 0.16 deleterious(0.01) benign(0.023) TCGA-QB-A6FS-06 17 28544292 28544292 C T SLC6A4 Silent p.K243K 0.26 TCGA-QB-A6FS-06 17 2966538 2966538 G A OR1D5 Missense_Mutation p.R122C 0.16 deleterious(0.01) benign(0.178) TCGA-QB-A6FS-06 17 29844720 29844720 G T RAB11FIP4 Nonsense_Mutation p.E130* 0.24 TCGA-QB-A6FS-06 17 30226677 30226677 G A UTP6 Silent p.I55I 0.35 TCGA-QB-A6FS-06 17 3119772 3119772 C T OR1A1 Silent p.F286F 0.17 TCGA-QB-A6FS-06 17 33680369 33680369 C T SLFN11 Silent p.L636L 0.17 TCGA-QB-A6FS-06 17 34062156 34062156 G A RASL10B 5'UTR 0.20 TCGA-QB-A6FS-06 17 34171931 34171931 G A TAF15 Missense_Mutation p.G543E 0.26 deleterious_low_confidence(0) unknown(0) TCGA-QB-A6FS-06 17 34235834 34235834 C T AC015849.16 RNA 0.24 TCGA-QB-A6FS-06 17 35536302 35536302 G A ACACA Missense_Mutation p.P1660S 0.21 tolerated(0.18) probably_damaging(0.997) TCGA-QB-A6FS-06 17 36551576 36551576 C T SOCS7 Missense_Mutation p.P502S 0.25 deleterious(0) possibly_damaging(0.839) TCGA-QB-A6FS-06 17 36717919 36717919 G A SRCIN1 Missense_Mutation p.P494S 0.29 tolerated(0.39) benign(0.069) TCGA-QB-A6FS-06 17 37187934 37187934 C T CTD-2206N4.2 5'Flank 0.32 TCGA-QB-A6FS-06 17 37762256 37762256 G A NEUROD2 Silent p.P199P 0.22 TCGA-QB-A6FS-06 17 38645006 38645006 C T TNS4 Missense_Mutation p.E219K 0.20 tolerated(0.79) benign(0.016) TCGA-QB-A6FS-06 17 39406423 39406423 C T KRTAP9-4 Missense_Mutation p.P151S 0.18 deleterious(0) probably_damaging(0.975) TCGA-QB-A6FS-06 17 39579998 39579998 C T KRT37 Intron 0.14 TCGA-QB-A6FS-06 17 39620587 39620587 C T KRT32 Missense_Mutation p.E273K 0.24 deleterious(0) possibly_damaging(0.803) TCGA-QB-A6FS-06 17 39674840 39674840 G A KRT15 Silent p.G80G 0.23 TCGA-QB-A6FS-06 17 39723964 39723964 C T KRT9 Missense_Mutation p.R478Q 0.33 tolerated(0.39) unknown(0) TCGA-QB-A6FS-06 17 39890717 39890717 C T HAP1 Missense_Mutation p.G57E 0.19 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-QB-A6FS-06 17 39921213 39921213 G A JUP Missense_Mutation p.S339F 0.35 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 17 40318550 40318550 G A KCNH4 Silent p.F535F 0.36 TCGA-QB-A6FS-06 17 40832611 40832611 C T CCR10 Missense_Mutation p.D17N 0.20 tolerated(0.18) benign(0.001) TCGA-QB-A6FS-06 17 41585813 41585813 C T DHX8 Silent p.I809I 0.25 TCGA-QB-A6FS-06 17 41960589 41960589 G A MPP2 Silent p.L95L 0.21 TCGA-QB-A6FS-06 17 42476338 42476338 G A GPATCH8 Missense_Mutation p.P1036L 0.21 deleterious(0.02) unknown(0) TCGA-QB-A6FS-06 17 43003591 43003591 G A KIF18B Intron 0.37 TCGA-QB-A6FS-06 17 4389719 4389719 C T SPNS3 Silent p.L431L 0.18 TCGA-QB-A6FS-06 17 43922996 43922996 G A SPPL2C Missense_Mutation p.E242K 0.13 tolerated(0.2) benign(0.015) TCGA-QB-A6FS-06 17 4436570 4436570 G A SPNS2 Missense_Mutation p.G374E 0.17 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 17 44949961 44949961 G A WNT9B Silent p.L52L 0.14 TCGA-QB-A6FS-06 17 47210369 47210369 G A B4GALNT2 5'UTR 0.28 TCGA-QB-A6FS-06 17 48155447 48155447 C T ITGA3 Missense_Mutation p.T726I 0.13 tolerated(0.06) possibly_damaging(0.905) TCGA-QB-A6FS-06 17 48195043 48195043 C T SAMD14 Missense_Mutation p.G76E 0.21 tolerated(1) benign(0.108) TCGA-QB-A6FS-06 17 48246470 48246470 G A SGCA Missense_Mutation p.G201D 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-QB-A6FS-06 17 48655581 48655581 C T CACNA1G Missense_Mutation p.P653S 0.12 deleterious(0.02) benign(0.027) TCGA-QB-A6FS-06 17 48761025 48761025 G A ABCC3 Missense_Mutation p.E1288K 0.11 tolerated(0.56) benign(0.005) TCGA-QB-A6FS-06 17 48917949 48917949 G A WFIKKN2 Missense_Mutation p.E434K 0.14 deleterious(0.03) possibly_damaging(0.755) TCGA-QB-A6FS-06 17 51901607 51901607 G A KIF2B Missense_Mutation p.E405K 0.16 tolerated(0.11) benign(0.039) TCGA-QB-A6FS-06 17 5424222 5424222 C T NLRP1 Silent p.G1298G 0.30 TCGA-QB-A6FS-06 17 54520288 54520288 C T ANKFN1 Missense_Mutation p.P368S 0.23 deleterious(0) benign(0.291) TCGA-QB-A6FS-06 17 56434779 56434779 C T RNF43 Intron 0.28 TCGA-QB-A6FS-06 17 56620793 56620793 G A C17orf47 Missense_Mutation p.P252L 0.11 tolerated(0.69) benign(0.001) TCGA-QB-A6FS-06 17 59457901 59457901 C T BCAS3 Intron 0.10 TCGA-QB-A6FS-06 17 59469518 59469518 C T BCAS3 3'UTR 0.10 TCGA-QB-A6FS-06 17 60526121 60526121 C T METTL2A 3'UTR 0.42 TCGA-QB-A6FS-06 17 60813545 60813545 G A MARCH10 Missense_Mutation p.L562F 0.32 tolerated(0.71) benign(0.086) TCGA-QB-A6FS-06 17 61498495 61498495 G A TANC2 Missense_Mutation p.G1718R 0.16 deleterious_low_confidence(0.04) benign(0.398) TCGA-QB-A6FS-06 17 61600753 61600753 G A KCNH6 5'Flank 0.24 TCGA-QB-A6FS-06 17 61949762 61949762 C T CSH2 Intron 0.30 TCGA-QB-A6FS-06 17 63157006 63157006 G A RGS9 Silent p.G134G 0.18 TCGA-QB-A6FS-06 17 65103622 65103622 T A HELZ Missense_Mutation p.N1635I 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-QB-A6FS-06 17 6513321 6513321 G A KIAA0753 Missense_Mutation p.P569S 0.20 deleterious(0) probably_damaging(0.996) TCGA-QB-A6FS-06 17 66533502 66533502 C T FAM20A 3'UTR 0.35 TCGA-QB-A6FS-06 17 6674145 6674145 G A XAF1 Missense_Mutation p.A231T 0.20 tolerated(0.35) benign(0.017) TCGA-QB-A6FS-06 17 67255937 67255937 G A ABCA5 Missense_Mutation p.P1214L 0.13 deleterious(0) probably_damaging(0.996) TCGA-QB-A6FS-06 17 6979026 6979026 G A CLEC10A Intron 0.20 TCGA-QB-A6FS-06 17 72588490 72588490 C T C17orf77 Missense_Mutation p.S102F 0.18 tolerated_low_confidence(0.05) unknown(0) TCGA-QB-A6FS-06 17 72947714 72947714 G A HID1 Missense_Mutation p.P773L 0.19 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 17 7318372 7318372 G A NLGN2 Silent p.K314K 0.20 TCGA-QB-A6FS-06 17 73658915 73658915 G A RECQL5 Nonsense_Mutation p.Q139* 0.15 TCGA-QB-A6FS-06 17 73727395 73727395 C T ITGB4 Silent p.S387S 0.20 TCGA-QB-A6FS-06 17 73843582 73843582 G A WBP2 Missense_Mutation p.P214L 0.24 deleterious(0) possibly_damaging(0.7) TCGA-QB-A6FS-06 17 73916502 73916502 G A FBF1 Silent p.L546L 0.45 TCGA-QB-A6FS-06 17 74093955 74093955 G A EXOC7 Silent p.L188L 0.12 TCGA-QB-A6FS-06 17 74277017 74277017 G A QRICH2 Silent p.G1261G 0.21 TCGA-QB-A6FS-06 17 74307761 74307761 G A PRPSAP1 Silent p.V340V 0.16 TCGA-QB-A6FS-06 17 7462265 7462265 C T TNFSF13 5'UTR 0.18 TCGA-QB-A6FS-06 17 7478546 7478546 C T EIF4A1 Silent p.V105V 0.24 TCGA-QB-A6FS-06 17 7606599 7606599 G A WRAP53 Missense_Mutation p.G481D 0.26 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 17 76399844 76399844 C T PGS1 Missense_Mutation p.P359L 0.18 tolerated(0.06) benign(0.168) TCGA-QB-A6FS-06 17 76525671 76525671 C T DNAH17 Missense_Mutation p.M1130I 0.18 benign(0.021) TCGA-QB-A6FS-06 17 78110088 78110088 G A EIF4A3 Missense_Mutation p.P344S 0.17 deleterious(0.03) benign(0.011) TCGA-QB-A6FS-06 17 79503604 79503604 G A FSCN2 Silent p.G378G 0.27 TCGA-QB-A6FS-06 17 7984534 7984534 G A AC129492.6 3'UTR 0.18 TCGA-QB-A6FS-06 17 80274706 80274706 G A CD7 Silent p.P78P 0.16 TCGA-QB-A6FS-06 17 8076642 8076642 A T TMEM107 3'Flank 0.29 TCGA-QB-A6FS-06 17 8215351 8215351 G A ARHGEF15 5'UTR 0.24 TCGA-QB-A6FS-06 17 8731916 8731916 C T PIK3R6 Silent p.L427L 0.29 TCGA-QB-A6FS-06 17 9631945 9631945 C T USP43 Missense_Mutation p.R1004W 0.13 tolerated(0.43) benign(0.001) TCGA-QB-A6FS-06 18 25532221 25532221 G A CDH2 Missense_Mutation p.L873F 0.23 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 18 25563045 25563045 G A CDH2 Missense_Mutation p.L738F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-QB-A6FS-06 18 28660142 28660142 C T DSC2 Missense_Mutation p.M480I 0.28 tolerated(1) benign(0) TCGA-QB-A6FS-06 18 29410813 29410813 G A TRAPPC8 Missense_Mutation p.P1405S 0.24 tolerated(0.07) possibly_damaging(0.493) TCGA-QB-A6FS-06 18 30092892 30092892 A T WBP11P1 RNA 0.13 TCGA-QB-A6FS-06 18 3253895 3253895 C T MYL12A Missense_Mutation p.P64S 0.14 tolerated(0.1) benign(0.188) TCGA-QB-A6FS-06 18 44260419 44260419 G A ST8SIA5 Silent p.Y239Y 0.33 TCGA-QB-A6FS-06 18 47792795 47792795 G A CCDC11 5'UTR 0.24 TCGA-QB-A6FS-06 18 56149244 56149244 G A ALPK2 Silent p.S2108S 0.21 TCGA-QB-A6FS-06 18 59483667 59483667 C T RNF152 Silent p.L10L 0.22 TCGA-QB-A6FS-06 18 61460452 61460452 G A SERPINB7 Missense_Mutation p.D93N 0.11 tolerated(0.93) possibly_damaging(0.685) TCGA-QB-A6FS-06 18 66378639 66378639 A G TMX3 Missense_Mutation p.F35L 0.14 deleterious(0.04) possibly_damaging(0.717) TCGA-QB-A6FS-06 18 67508588 67508588 G A DOK6 Missense_Mutation p.G322E 0.16 tolerated_low_confidence(0.1) benign(0.365) TCGA-QB-A6FS-06 18 6898475 6898475 G A ARHGAP28 Intron 0.40 TCGA-QB-A6FS-06 18 73000569 73000569 C T TSHZ1 Silent p.I1024I 0.12 TCGA-QB-A6FS-06 18 76754779 76754779 G A SALL3 Missense_Mutation p.E930K 0.36 tolerated(0.24) benign(0.277) TCGA-QB-A6FS-06 18 77623902 77623902 C T KCNG2 Missense_Mutation p.R79C 0.24 tolerated(0.09) probably_damaging(0.91) TCGA-QB-A6FS-06 18 9954086 9954086 G A VAPA Missense_Mutation p.D255N 0.19 tolerated(0.29) benign(0.012) TCGA-QB-A6FS-06 19 10090678 10090678 C T COL5A3 Missense_Mutation p.G884S 0.15 unknown(0) TCGA-QB-A6FS-06 19 10203850 10203850 C T C19orf66 3'UTR 0.25 TCGA-QB-A6FS-06 19 10249208 10249208 G A DNMT1 Missense_Mutation p.P1341L 0.15 deleterious(0) probably_damaging(0.924) TCGA-QB-A6FS-06 19 10478868 10478868 G A TYK2 Missense_Mutation p.R110W 0.25 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 19 1049425 1049425 G A ABCA7 Silent p.K847K 0.27 TCGA-QB-A6FS-06 19 10561296 10561296 G A PDE4A Missense_Mutation p.G213D 0.17 tolerated(0.07) benign(0.13) TCGA-QB-A6FS-06 19 10662728 10662728 C T ATG4D Silent p.F351F 0.24 TCGA-QB-A6FS-06 19 10930700 10930700 C T DNM2 Silent p.I572I 0.21 TCGA-QB-A6FS-06 19 10940873 10940873 A T DNM2 Missense_Mutation p.T788S 0.26 tolerated_low_confidence(0.86) benign(0.043) TCGA-QB-A6FS-06 19 10940874 10940874 C T DNM2 Missense_Mutation p.T788I 0.26 tolerated_low_confidence(0.16) benign(0.034) TCGA-QB-A6FS-06 19 11526640 11526640 C T RGL3 Missense_Mutation p.E204K 0.19 tolerated(0.07) benign(0.017) TCGA-QB-A6FS-06 19 11979244 11979244 C T ZNF439 Nonsense_Mutation p.R454* 0.25 TCGA-QB-A6FS-06 19 12243715 12243715 C T ZNF20 Missense_Mutation p.G429E 0.18 deleterious(0.05) probably_damaging(0.919) TCGA-QB-A6FS-06 19 12721462 12721462 C T ZNF490 Missense_Mutation p.M11I 0.22 deleterious_low_confidence(0) benign(0.019) TCGA-QB-A6FS-06 19 12807419 12807419 C T FBXW9 5'UTR 0.17 TCGA-QB-A6FS-06 19 13004358 13004358 G A GCDH Silent p.R132R 0.15 TCGA-QB-A6FS-06 19 13414696 13414696 G A CACNA1A Silent p.I663I 0.24 TCGA-QB-A6FS-06 19 13616869 13616869 C T CACNA1A Missense_Mutation p.R57Q 0.19 benign(0.417) TCGA-QB-A6FS-06 19 15789169 15789169 C T CYP4F12 Silent p.I99I 0.24 TCGA-QB-A6FS-06 19 15794543 15794543 G A CYP4F12 Silent p.L296L 0.21 TCGA-QB-A6FS-06 19 15852478 15852478 C T OR10H3 Silent p.S92S 0.20 TCGA-QB-A6FS-06 19 15871661 15871661 G A LLNLR-249E10.1 RNA 0.17 TCGA-QB-A6FS-06 19 15918436 15918436 G A OR10H1 Missense_Mutation p.P138S 0.21 tolerated(0.36) benign(0.005) TCGA-QB-A6FS-06 19 17038955 17038955 G A CPAMD8 Silent p.S1125S 0.17 TCGA-QB-A6FS-06 19 17120113 17120113 C T CPAMD8 Silent p.L215L 0.20 TCGA-QB-A6FS-06 19 17370413 17370413 T C USHBP1 Silent p.Q299Q 0.17 TCGA-QB-A6FS-06 19 19351433 19351433 G A NCAN Nonsense_Mutation p.W1144* 0.25 TCGA-QB-A6FS-06 19 19788737 19788737 C T ZNF101 Missense_Mutation p.P23L 0.24 deleterious(0.02) possibly_damaging(0.819) TCGA-QB-A6FS-06 19 20044530 20044530 C T ZNF93 Missense_Mutation p.P256S 0.18 tolerated(0.06) probably_damaging(0.94) TCGA-QB-A6FS-06 19 22156665 22156665 G A ZNF208 Missense_Mutation p.H391Y 0.22 deleterious(0) probably_damaging(0.983) TCGA-QB-A6FS-06 19 22171589 22171589 G A ZNF208 Silent p.F42F 0.13 TCGA-QB-A6FS-06 19 22364073 22364073 G A ZNF676 Missense_Mutation p.S149L 0.20 tolerated(0.08) benign(0.001) TCGA-QB-A6FS-06 19 22785447 22785447 G A AC011467.1 5'Flank 0.20 TCGA-QB-A6FS-06 19 2877596 2877596 C T ZNF556 Missense_Mutation p.R214C 0.19 tolerated(0.2) benign(0.032) TCGA-QB-A6FS-06 19 33703782 33703782 G A SLC7A10 Silent p.S161S 0.21 TCGA-QB-A6FS-06 19 34003558 34003558 G A PEPD Silent p.L48L 0.28 TCGA-QB-A6FS-06 19 35434798 35434798 C T ZNF30 Missense_Mutation p.H311Y 0.26 deleterious(0) possibly_damaging(0.873) TCGA-QB-A6FS-06 19 35449303 35449303 A G ZNF792 Silent p.L486L 0.21 TCGA-QB-A6FS-06 19 35842700 35842700 C T FFAR1 Silent p.F82F 0.31 TCGA-QB-A6FS-06 19 36211905 36211905 C T KMT2B Silent p.P552P 0.37 TCGA-QB-A6FS-06 19 367134 367134 C T THEG Missense_Mutation p.E282K 0.20 tolerated(0.17) benign(0.311) TCGA-QB-A6FS-06 19 37642751 37642751 G A ZNF585A Missense_Mutation p.H629Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 19 37879460 37879460 G A ZNF527 Missense_Mutation p.R170K 0.21 tolerated(1) benign(0.005) TCGA-QB-A6FS-06 19 38631905 38631905 C T SIPA1L3 Silent p.P1075P 0.19 TCGA-QB-A6FS-06 19 38948883 38948883 C T RYR1 Silent p.V706V 0.17 TCGA-QB-A6FS-06 19 38976453 38976453 G A RYR1 Missense_Mutation p.E1720K 0.17 possibly_damaging(0.895) TCGA-QB-A6FS-06 19 39914447 39914447 C T PLEKHG2 Missense_Mutation p.P892S 0.22 tolerated_low_confidence(0.21) benign(0.007) TCGA-QB-A6FS-06 19 40098078 40098078 C T LGALS13 3'UTR 0.54 TCGA-QB-A6FS-06 19 41510037 41510037 C T CYP2B6 Silent p.I101I 0.20 TCGA-QB-A6FS-06 19 41712263 41712263 C T CYP2S1 Missense_Mutation p.S462F 0.14 deleterious(0.05) benign(0.114) TCGA-QB-A6FS-06 19 41712264 41712264 C T CYP2S1 Silent p.S462S 0.15 TCGA-QB-A6FS-06 19 42083671 42083671 C T CEACAM21 Missense_Mutation p.L62F 0.12 deleterious(0.04) benign(0.406) TCGA-QB-A6FS-06 19 42311196 42311196 G A CEACAM3 Intron 0.21 TCGA-QB-A6FS-06 19 42479896 42479896 C T ATP1A3 Silent p.K729K 0.20 TCGA-QB-A6FS-06 19 43519497 43519497 G A PSG11 Silent p.F245F 0.23 TCGA-QB-A6FS-06 19 43585144 43585144 G A PSG2 Silent p.L107L 0.24 TCGA-QB-A6FS-06 19 43690664 43690664 T A PSG5 5'UTR 0.19 TCGA-QB-A6FS-06 19 43772124 43772124 G A PSG9 Missense_Mutation p.S81L 0.24 tolerated(0.08) benign(0.049) TCGA-QB-A6FS-06 19 44833712 44833712 G A ZNF112 Missense_Mutation p.H206Y 0.24 deleterious(0.04) benign(0.048) TCGA-QB-A6FS-06 19 45537541 45537541 C T RELB Missense_Mutation p.P416L 0.30 deleterious(0.04) probably_damaging(0.948) TCGA-QB-A6FS-06 19 4682740 4682740 G A DPP9 Silent p.S814S 0.25 TCGA-QB-A6FS-06 19 47422100 47422100 C T ARHGAP35 Silent p.S56S 0.23 TCGA-QB-A6FS-06 19 47944602 47944602 C T SLC8A2 Missense_Mutation p.G620E 0.24 tolerated(0.2) benign(0.145) TCGA-QB-A6FS-06 19 48305460 48305460 G A TPRX1 Missense_Mutation p.P270S 0.15 tolerated(0.22) unknown(0) TCGA-QB-A6FS-06 19 48387042 48387042 C T SULT2A1 Missense_Mutation p.G46E 0.11 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 19 48621014 48621014 G A LIG1 Missense_Mutation p.P822S 0.16 tolerated(1) benign(0.002) TCGA-QB-A6FS-06 19 48892884 48892884 A G KDELR1 Missense_Mutation p.F93L 0.20 deleterious(0.03) probably_damaging(0.973) TCGA-QB-A6FS-06 19 49107094 49107094 C T FAM83E Missense_Mutation p.S278N 0.19 deleterious(0.04) benign(0.186) TCGA-QB-A6FS-06 19 49669382 49669382 C T TRPM4 Silent p.T59T 0.17 TCGA-QB-A6FS-06 19 50158053 50158053 C T SCAF1 Missense_Mutation p.P1182S 0.16 possibly_damaging(0.803) TCGA-QB-A6FS-06 19 50189399 50189399 C T PRMT1 Missense_Mutation p.P270L 0.31 deleterious(0) benign(0.245) TCGA-QB-A6FS-06 19 50475129 50475129 C T VRK3 3'Flank 0.28 TCGA-QB-A6FS-06 19 50544992 50544992 C T ZNF473 Missense_Mutation p.P48S 0.21 tolerated(0.84) benign(0.097) TCGA-QB-A6FS-06 19 50957332 50957332 G A MYBPC2 Missense_Mutation p.S602N 0.24 tolerated(0.34) possibly_damaging(0.836) TCGA-QB-A6FS-06 19 51020867 51020867 C T LRRC4B Silent p.K701K 0.30 TCGA-QB-A6FS-06 19 51128505 51128505 C T SYT3 Missense_Mutation p.A541T 0.36 tolerated(0.25) benign(0.232) TCGA-QB-A6FS-06 19 51133351 51133351 G A SYT3 Missense_Mutation p.P251L 0.21 tolerated(0.3) benign(0.024) TCGA-QB-A6FS-06 19 51363302 51363302 C T KLK3 Silent p.A235A 0.23 TCGA-QB-A6FS-06 19 51462448 51462448 C T KLK6 Nonsense_Mutation p.W236* 0.26 TCGA-QB-A6FS-06 19 51480881 51480881 G A KLK7 Missense_Mutation p.P225S 0.18 deleterious(0) probably_damaging(0.989) TCGA-QB-A6FS-06 19 51955852 51955852 G A SIGLEC8 Silent p.P427P 0.23 TCGA-QB-A6FS-06 19 52003217 52003217 C T SIGLEC12 Silent p.R255R 0.23 TCGA-QB-A6FS-06 19 52273023 52273023 G A FPR2 3'UTR 0.27 TCGA-QB-A6FS-06 19 53645303 53645303 G A ZNF347 Missense_Mutation p.P261S 0.19 tolerated(0.29) benign(0.326) TCGA-QB-A6FS-06 19 53958320 53958320 C T ZNF761 RNA 0.19 TCGA-QB-A6FS-06 19 53960452 53960452 C T ZNF761 RNA 0.30 TCGA-QB-A6FS-06 19 54313910 54313910 C T NLRP12 Missense_Mutation p.E335K 0.11 tolerated(0.26) benign(0.39) TCGA-QB-A6FS-06 19 55107247 55107247 C T LILRA1 Missense_Mutation p.P269S 0.25 tolerated(0.49) benign(0.262) TCGA-QB-A6FS-06 19 56090215 56090215 G A ZNF579 Missense_Mutation p.P264L 0.22 tolerated(0.08) probably_damaging(0.982) TCGA-QB-A6FS-06 19 5610021 5610021 G A SAFB2 Silent p.F427F 0.22 TCGA-QB-A6FS-06 19 5610023 5610023 A C SAFB2 Missense_Mutation p.F427V 0.21 deleterious(0) probably_damaging(0.991) TCGA-QB-A6FS-06 19 56424312 56424312 C T NLRP13 Missense_Mutation p.D291N 0.23 tolerated(0.15) benign(0.082) TCGA-QB-A6FS-06 19 56477726 56477726 G A NLRP8 Silent p.R787R 0.15 TCGA-QB-A6FS-06 19 56538668 56538668 C T NLRP5 Silent p.L357L 0.19 TCGA-QB-A6FS-06 19 56702267 56702267 C T ZSCAN5B Silent p.K226K 0.24 TCGA-QB-A6FS-06 19 57334191 57334191 C T PEG3 Nonsense_Mutation p.W165* 0.15 TCGA-QB-A6FS-06 19 5745945 5745945 C T CATSPERD Missense_Mutation p.H227Y 0.24 tolerated(0.27) benign(0.126) TCGA-QB-A6FS-06 19 58189731 58189731 C T ZSCAN4 Nonsense_Mutation p.Q254* 0.26 TCGA-QB-A6FS-06 19 58489647 58489647 G A ZNF606 3'UTR 0.18 TCGA-QB-A6FS-06 19 58565265 58565265 G A ZSCAN1 Missense_Mutation p.R358Q 0.27 tolerated(0.51) benign(0.129) TCGA-QB-A6FS-06 19 59059032 59059032 G A TRIM28 Missense_Mutation p.G264E 0.26 tolerated(0.4) probably_damaging(0.999) TCGA-QB-A6FS-06 19 6454085 6454085 G A SLC25A23 Silent p.I270I 0.28 TCGA-QB-A6FS-06 19 7082956 7082956 C T ZNF557 Missense_Mutation p.S165F 0.23 tolerated(0.08) probably_damaging(0.919) TCGA-QB-A6FS-06 19 7172373 7172373 C T INSR Missense_Mutation p.R399Q 0.25 deleterious(0.03) probably_damaging(0.927) TCGA-QB-A6FS-06 19 7523420 7523420 C T ARHGEF18 Missense_Mutation p.S547L 0.15 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 19 7828363 7828363 G A CLEC4M Splice_Site p.X44_splice 0.27 TCGA-QB-A6FS-06 19 7986621 7986621 G A SNAPC2 Missense_Mutation p.G112E 0.44 tolerated(0.08) probably_damaging(0.996) TCGA-QB-A6FS-06 19 8467411 8467411 C T RAB11B Missense_Mutation p.S158F 0.25 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-QB-A6FS-06 19 8620596 8620596 C T MYO1F Missense_Mutation p.E30K 0.22 deleterious(0) probably_damaging(0.991) TCGA-QB-A6FS-06 19 8809028 8809028 G A ACTL9 Silent p.S8S 0.21 TCGA-QB-A6FS-06 19 9061664 9061664 G A MUC16 Silent p.L8594L 0.22 TCGA-QB-A6FS-06 19 9064379 9064379 G A MUC16 Silent p.S7689S 0.20 TCGA-QB-A6FS-06 19 9067623 9067623 G A MUC16 Missense_Mutation p.S6608L 0.25 unknown(0) TCGA-QB-A6FS-06 19 9069895 9069895 G A MUC16 Missense_Mutation p.P5851S 0.20 unknown(0) TCGA-QB-A6FS-06 19 9075928 9075928 G A MUC16 Missense_Mutation p.P3840S 0.25 unknown(0) TCGA-QB-A6FS-06 19 9087897 9087897 C T MUC16 Silent p.E1306E 0.20 TCGA-QB-A6FS-06 19 9089422 9089422 G A MUC16 Missense_Mutation p.S798L 0.24 unknown(0) TCGA-QB-A6FS-06 19 9361804 9361804 G A OR7E24 Missense_Mutation p.E29K 0.15 deleterious(0.04) benign(0.066) TCGA-QB-A6FS-06 19 9362376 9362376 C T OR7E24 Silent p.F219F 0.15 TCGA-QB-A6FS-06 19 9801820 9801820 C T ZNF812 Missense_Mutation p.G120E 0.16 tolerated(0.12) possibly_damaging(0.798) TCGA-QB-A6FS-06 19 990989 990989 C T WDR18 Silent p.F245F 0.15 TCGA-QB-A6FS-06 1 100684190 100684190 C T DBT Missense_Mutation p.E183K 0.25 deleterious(0) possibly_damaging(0.771) TCGA-QB-A6FS-06 1 103491447 103491447 G A COL11A1 Intron 0.20 TCGA-QB-A6FS-06 1 10725488 10725488 G A CASZ1 Missense_Mutation p.H53Y 0.11 tolerated_low_confidence(0.09) benign(0.225) TCGA-QB-A6FS-06 1 108735304 108735304 C T SLC25A24 Intron 0.29 TCGA-QB-A6FS-06 1 109794937 109794937 C T CELSR2 Missense_Mutation p.R746C 0.17 deleterious(0) probably_damaging(0.997) TCGA-QB-A6FS-06 1 111146436 111146436 G A KCNA2 Silent p.A323A 0.20 TCGA-QB-A6FS-06 1 111146437 111146437 G A KCNA2 Missense_Mutation p.A323V 0.19 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 1 1115512 1115512 G A TTLL10 Missense_Mutation p.D100N 0.23 tolerated_low_confidence(0.16) benign(0.127) TCGA-QB-A6FS-06 1 112270131 112270131 G A FAM212B Missense_Mutation p.P118L 0.22 tolerated(0.06) benign(0.006) TCGA-QB-A6FS-06 1 112329617 112329617 A G KCND3 Silent p.F406F 0.28 TCGA-QB-A6FS-06 1 114308958 114308958 G A RSBN1 Nonsense_Mutation p.Q685* 0.23 TCGA-QB-A6FS-06 1 114523781 114523781 C T OLFML3 Missense_Mutation p.P204L 0.29 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 115576933 115576933 C T TSHB 3'UTR 0.22 TCGA-QB-A6FS-06 1 117146260 117146260 G A IGSF3 Missense_Mutation p.S557F 0.18 deleterious(0) possibly_damaging(0.474) TCGA-QB-A6FS-06 1 118598420 118598420 C T SPAG17 Silent p.L886L 0.12 TCGA-QB-A6FS-06 1 119428076 119428076 G A TBX15 Missense_Mutation p.S257F 0.29 deleterious(0.04) possibly_damaging(0.459) TCGA-QB-A6FS-06 1 119466224 119466224 G A TBX15 Silent p.I126I 0.20 TCGA-QB-A6FS-06 1 119965205 119965205 G A HSD3B2 Missense_Mutation p.D361N 0.19 tolerated(0.11) benign(0.002) TCGA-QB-A6FS-06 1 120056697 120056697 C T HSD3B1 Missense_Mutation p.A184V 0.19 deleterious(0.04) possibly_damaging(0.841) TCGA-QB-A6FS-06 1 12854537 12854537 G A PRAMEF1 Missense_Mutation p.R254Q 0.21 tolerated(1) benign(0.002) TCGA-QB-A6FS-06 1 12942176 12942176 C T PRAMEF4 Missense_Mutation p.G125E 0.20 tolerated(1) benign(0.02) TCGA-QB-A6FS-06 1 12942234 12942234 C T PRAMEF4 Missense_Mutation p.D106N 0.17 deleterious(0.02) probably_damaging(0.947) TCGA-QB-A6FS-06 1 12942930 12942930 G A PRAMEF4 Missense_Mutation p.R96C 0.15 tolerated(0.08) benign(0.009) TCGA-QB-A6FS-06 1 13001161 13001161 C T PRAMEF6 Silent p.R174R 0.10 TCGA-QB-A6FS-06 1 1417621 1417621 C T ATAD3B Silent p.I206I 0.18 TCGA-QB-A6FS-06 1 150526119 150526119 G A ADAMTSL4 Missense_Mutation p.E218K 0.12 tolerated(0.2) benign(0.008) TCGA-QB-A6FS-06 1 151280271 151280271 G A PI4KB Nonsense_Mutation p.R333* 0.08 TCGA-QB-A6FS-06 1 152058007 152058007 C T TCHHL1 Silent p.Q717Q 0.17 TCGA-QB-A6FS-06 1 152129107 152129107 G A RPTN Silent p.S156S 0.53 TCGA-QB-A6FS-06 1 152187475 152187475 G A HRNR Silent p.S2210S 0.10 TCGA-QB-A6FS-06 1 152187486 152187486 G A HRNR Missense_Mutation p.R2207C 0.10 unknown(0) TCGA-QB-A6FS-06 1 152188377 152188377 C T HRNR Missense_Mutation p.G1910S 0.05 unknown(0) TCGA-QB-A6FS-06 1 152280503 152280503 C T FLG Missense_Mutation p.E2287K 0.12 benign(0.305) TCGA-QB-A6FS-06 1 152281161 152281161 G A FLG Silent p.P2067P 0.13 TCGA-QB-A6FS-06 1 152282254 152282254 G A FLG Missense_Mutation p.S1703L 0.12 possibly_damaging(0.637) TCGA-QB-A6FS-06 1 152284195 152284195 G A FLG Missense_Mutation p.S1056F 0.40 probably_damaging(0.988) TCGA-QB-A6FS-06 1 152326817 152326817 C T FLG2 Missense_Mutation p.G1149S 0.47 unknown(0) TCGA-QB-A6FS-06 1 152384585 152384585 G A CRNN Missense_Mutation p.A42V 0.11 deleterious(0.03) benign(0.178) TCGA-QB-A6FS-06 1 152648755 152648755 C T LCE2C Silent p.S88S 0.18 TCGA-QB-A6FS-06 1 152884094 152884094 C T IVL 3'UTR 0.48 TCGA-QB-A6FS-06 1 153122541 153122541 G A SPRR2G Missense_Mutation p.P16S 0.13 unknown(0) TCGA-QB-A6FS-06 1 153362944 153362944 T A S100A8 Missense_Mutation p.K23M 0.38 tolerated(0.06) probably_damaging(0.954) TCGA-QB-A6FS-06 1 154026786 154026786 C T NUP210L Missense_Mutation p.G1134E 0.42 deleterious(0) probably_damaging(0.981) TCGA-QB-A6FS-06 1 154321393 154321393 C T ATP8B2 Silent p.S1157S 0.10 TCGA-QB-A6FS-06 1 154997067 154997067 G A DCST2 Silent p.S541S 0.17 TCGA-QB-A6FS-06 1 155447901 155447901 G A ASH1L Missense_Mutation p.S1587F 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-QB-A6FS-06 1 155931901 155931901 G A ARHGEF2 Missense_Mutation p.S405F 0.16 deleterious(0) possibly_damaging(0.875) TCGA-QB-A6FS-06 1 155981610 155981610 G A SSR2 Silent p.S144S 0.15 TCGA-QB-A6FS-06 1 156237363 156237363 C T SMG5 Missense_Mutation p.D339N 0.39 tolerated(0.19) benign(0.02) TCGA-QB-A6FS-06 1 156237364 156237364 C T SMG5 Silent p.E338E 0.39 TCGA-QB-A6FS-06 1 156617812 156617812 G A BCAN Missense_Mutation p.D227N 0.14 deleterious(0.01) probably_damaging(0.915) TCGA-QB-A6FS-06 1 156816430 156816430 G A INSRR Missense_Mutation p.S564F 0.09 tolerated(0.53) benign(0.225) TCGA-QB-A6FS-06 1 158059362 158059362 G A KIRREL Missense_Mutation p.R372Q 0.21 deleterious(0) benign(0.166) TCGA-QB-A6FS-06 1 158152067 158152067 C T CD1D Missense_Mutation p.L192F 0.07 deleterious(0.03) probably_damaging(0.911) TCGA-QB-A6FS-06 1 158323802 158323802 C T CD1E Silent p.F8F 0.33 TCGA-QB-A6FS-06 1 158325322 158325322 G A CD1E Silent p.G196G 0.62 TCGA-QB-A6FS-06 1 158596683 158596683 C T SPTA1 Missense_Mutation p.D1927N 0.09 tolerated(1) benign(0.04) TCGA-QB-A6FS-06 1 158811968 158811968 C T MNDA Missense_Mutation p.L9F 0.32 deleterious(0) benign(0.316) TCGA-QB-A6FS-06 1 159284287 159284287 G A OR10J3 Missense_Mutation p.H55Y 0.49 tolerated(0.07) benign(0.077) TCGA-QB-A6FS-06 1 159784043 159784043 G A FCRL6 Missense_Mutation p.V370I 0.12 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 1 160104985 160104985 C T ATP1A2 Missense_Mutation p.S672L 0.56 tolerated(0.06) benign(0.006) TCGA-QB-A6FS-06 1 160523701 160523701 G A CD84 Silent p.A208A 0.48 TCGA-QB-A6FS-06 1 161047499 161047499 T G PVRL4 Silent p.A158A 0.34 TCGA-QB-A6FS-06 1 163295964 163295964 G A NUF2 Silent p.K41K 0.44 TCGA-QB-A6FS-06 1 166973437 166973437 C T MAEL Missense_Mutation p.P182S 0.50 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 167096871 167096871 G A DUSP27 Missense_Mutation p.E835K 0.38 tolerated(1) benign(0.002) TCGA-QB-A6FS-06 1 169337071 169337071 C T NME7 5'UTR 0.14 TCGA-QB-A6FS-06 1 169337072 169337072 C T NME7 5'UTR 0.14 TCGA-QB-A6FS-06 1 169511190 169511190 C T F5 Silent p.R1046R 0.14 TCGA-QB-A6FS-06 1 17323622 17323622 G A ATP13A2 Missense_Mutation p.P363L 0.18 tolerated(0.3) benign(0.008) TCGA-QB-A6FS-06 1 173506150 173506150 C T SLC9C2 Missense_Mutation p.G529E 0.12 tolerated(0.24) possibly_damaging(0.9) TCGA-QB-A6FS-06 1 174417981 174417981 C T GPR52 Silent p.F244F 0.13 TCGA-QB-A6FS-06 1 175375835 175375835 C T TNR Missense_Mutation p.E6K 0.40 deleterious_low_confidence(0.04) benign(0.069) TCGA-QB-A6FS-06 1 17599902 17599902 G A PADI3 Missense_Mutation p.R372K 0.19 deleterious(0) possibly_damaging(0.898) TCGA-QB-A6FS-06 1 17599903 17599903 G A PADI3 Silent p.R372R 0.19 TCGA-QB-A6FS-06 1 176525570 176525570 G A PAPPA2 Missense_Mutation p.E38K 0.54 deleterious_low_confidence(0.02) benign(0.05) TCGA-QB-A6FS-06 1 179398708 179398708 G A AXDND1 Missense_Mutation p.G429D 0.29 deleterious(0.01) possibly_damaging(0.604) TCGA-QB-A6FS-06 1 179562937 179562937 G A TDRD5 Missense_Mutation p.R192K 0.08 tolerated(0.09) possibly_damaging(0.77) TCGA-QB-A6FS-06 1 181546919 181546919 G A CACNA1E Missense_Mutation p.G177E 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-QB-A6FS-06 1 181686297 181686297 G A CACNA1E Missense_Mutation p.E462K 0.15 deleterious(0.04) benign(0.292) TCGA-QB-A6FS-06 1 182026146 182026146 G A ZNF648 Missense_Mutation p.P334S 0.45 deleterious(0) probably_damaging(0.992) TCGA-QB-A6FS-06 1 182555609 182555609 G A RNASEL Silent p.F111F 0.52 TCGA-QB-A6FS-06 1 182852725 182852725 C T DHX9 Missense_Mutation p.S1072F 0.09 deleterious(0.02) benign(0.055) TCGA-QB-A6FS-06 1 184764540 184764540 C T FAM129A Silent p.G786G 0.32 TCGA-QB-A6FS-06 1 184764624 184764624 G A FAM129A Silent p.I758I 0.12 TCGA-QB-A6FS-06 1 186901996 186901996 T G PLA2G4A Missense_Mutation p.C220W 0.10 deleterious(0) probably_damaging(0.976) TCGA-QB-A6FS-06 1 18809386 18809386 C T KLHDC7A Silent p.F637F 0.24 TCGA-QB-A6FS-06 1 19186080 19186080 C T TAS1R2 Silent p.S25S 0.16 TCGA-QB-A6FS-06 1 19420509 19420509 G A UBR4 Missense_Mutation p.S4624F 0.17 probably_damaging(0.99) TCGA-QB-A6FS-06 1 196227451 196227451 G A KCNT2 Silent p.H1028H 0.13 TCGA-QB-A6FS-06 1 196801164 196801164 T A CFHR1 3'UTR 0.43 TCGA-QB-A6FS-06 1 196879556 196879556 G A CFHR4 Nonsense_Mutation p.W314* 0.10 TCGA-QB-A6FS-06 1 196918720 196918720 C T CFHR2 Missense_Mutation p.S65F 0.51 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 1 196928040 196928040 G A CFHR2 Missense_Mutation p.E215K 0.19 tolerated(0.36) benign(0.011) TCGA-QB-A6FS-06 1 197026428 197026428 G A F13B Missense_Mutation p.P325S 0.17 tolerated(0.09) probably_damaging(0.951) TCGA-QB-A6FS-06 1 197391068 197391068 G A CRB1 Missense_Mutation p.G704S 0.38 deleterious(0) probably_damaging(0.993) TCGA-QB-A6FS-06 1 198668750 198668750 C T PTPRC Missense_Mutation p.S119F 0.38 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-QB-A6FS-06 1 200880630 200880630 C T C1orf106 Missense_Mutation p.P337S 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-QB-A6FS-06 1 200960248 200960248 G A KIF21B Silent p.P828P 0.13 TCGA-QB-A6FS-06 1 200960249 200960249 G A KIF21B Missense_Mutation p.P828L 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-QB-A6FS-06 1 200967693 200967693 G A KIF21B Silent p.F632F 0.16 TCGA-QB-A6FS-06 1 200974034 200974034 C T KIF21B Missense_Mutation p.D254N 0.08 tolerated(0.47) benign(0.179) TCGA-QB-A6FS-06 1 202128723 202128723 G A PTPN7 Intron 0.43 TCGA-QB-A6FS-06 1 202566040 202566040 C T SYT2 Missense_Mutation p.E369K 0.43 deleterious(0) possibly_damaging(0.855) TCGA-QB-A6FS-06 1 203316497 203316497 G T FMOD Missense_Mutation p.S301Y 0.50 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 203452395 203452395 C T PRELP Missense_Mutation p.P28L 0.48 deleterious_low_confidence(0.04) benign(0.092) TCGA-QB-A6FS-06 1 204125846 204125846 G A REN Silent p.I259I 0.46 TCGA-QB-A6FS-06 1 204394141 204394141 C T PIK3C2B Missense_Mutation p.D1582N 0.09 tolerated(0.16) probably_damaging(1) TCGA-QB-A6FS-06 1 205884054 205884054 G A SLC26A9 Missense_Mutation p.S877L 0.10 unknown(0) TCGA-QB-A6FS-06 1 205899030 205899030 G A SLC26A9 Missense_Mutation p.S236F 0.09 deleterious(0) possibly_damaging(0.908) TCGA-QB-A6FS-06 1 207196515 207196515 G A C1orf116 Silent p.I198I 0.37 TCGA-QB-A6FS-06 1 207874875 207874875 G A CR1L Missense_Mutation p.E414K 0.18 tolerated(0.41) benign(0) TCGA-QB-A6FS-06 1 209880365 209880365 C T HSD11B1 Missense_Mutation p.R137C 0.12 deleterious(0) probably_damaging(0.989) TCGA-QB-A6FS-06 1 21048380 21048380 C T SH2D5 Missense_Mutation p.E393K 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-QB-A6FS-06 1 211451545 211451545 G A RCOR3 Silent p.Q201Q 0.10 TCGA-QB-A6FS-06 1 215955487 215955487 C T USH2A Missense_Mutation p.G3546E 0.61 probably_damaging(0.999) TCGA-QB-A6FS-06 1 224318205 224318205 G T FBXO28 Missense_Mutation p.R100I 0.43 deleterious(0.01) possibly_damaging(0.656) TCGA-QB-A6FS-06 1 224872500 224872500 G A CNIH3 Silent p.R51R 0.36 TCGA-QB-A6FS-06 1 225155151 225155151 G A DNAH14 Missense_Mutation p.G173R 0.37 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 225609969 225609969 G A LBR Missense_Mutation p.S59F 0.08 tolerated(0.21) possibly_damaging(0.907) TCGA-QB-A6FS-06 1 228487166 228487166 G A OBSCN Missense_Mutation p.G4473R 0.12 probably_damaging(1) TCGA-QB-A6FS-06 1 228871628 228871628 G A RHOU Missense_Mutation p.G47R 0.38 tolerated(0.48) probably_damaging(0.953) TCGA-QB-A6FS-06 1 22927425 22927425 C T EPHA8 Missense_Mutation p.P858L 0.15 deleterious(0.01) possibly_damaging(0.879) TCGA-QB-A6FS-06 1 22927886 22927886 C T EPHA8 Silent p.S941S 0.19 TCGA-QB-A6FS-06 1 232942095 232942095 C T MAP10 Silent p.C442C 0.54 TCGA-QB-A6FS-06 1 232943714 232943714 T C MAP10 Missense_Mutation p.L982S 0.52 tolerated(0.18) benign(0.121) TCGA-QB-A6FS-06 1 233190032 233190032 G A PCNXL2 Nonsense_Mutation p.R1445* 0.10 TCGA-QB-A6FS-06 1 237052584 237052584 G A MTR Silent p.R985R 0.11 TCGA-QB-A6FS-06 1 237052585 237052585 G A MTR Missense_Mutation p.G986S 0.11 deleterious(0) probably_damaging(0.99) TCGA-QB-A6FS-06 1 237057714 237057714 C T MTR Missense_Mutation p.P1088S 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-QB-A6FS-06 1 237664159 237664159 C T RYR2 Silent p.I784I 0.08 TCGA-QB-A6FS-06 1 237921077 237921077 G A RYR2 Splice_Site p.X3775_splice 0.35 TCGA-QB-A6FS-06 1 238050775 238050775 G A ZP4 Missense_Mutation p.R214C 0.15 tolerated(0.09) benign(0.052) TCGA-QB-A6FS-06 1 238053213 238053213 C T ZP4 Silent p.K118K 0.33 TCGA-QB-A6FS-06 1 238090746 238090746 C T RP11-193H5.1 RNA 0.31 TCGA-QB-A6FS-06 1 23848336 23848336 G A E2F2 Nonsense_Mutation p.Q191* 0.28 TCGA-QB-A6FS-06 1 23848337 23848337 G A E2F2 Silent p.I190I 0.28 TCGA-QB-A6FS-06 1 240371488 240371488 G A FMN2 Missense_Mutation p.G1126R 0.09 unknown(0) TCGA-QB-A6FS-06 1 2418402 2418402 C T PLCH2 Silent p.C264C 0.22 TCGA-QB-A6FS-06 1 243303396 243303396 A C CEP170 Missense_Mutation p.V1358G 0.58 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 1 24413179 24413179 C T MYOM3 Missense_Mutation p.D585N 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-QB-A6FS-06 1 24483662 24483662 G C IFNLR1 Silent p.T507T 0.17 TCGA-QB-A6FS-06 1 245246775 245246775 C T EFCAB2 Nonsense_Mutation p.R99* 0.39 TCGA-QB-A6FS-06 1 247588185 247588185 G A NLRP3 Silent p.Q480Q 0.41 TCGA-QB-A6FS-06 1 247875377 247875377 C T OR6F1 Silent p.R227R 0.52 TCGA-QB-A6FS-06 1 247902099 247902099 C T OR14K1 Silent p.L61L 0.17 TCGA-QB-A6FS-06 1 247921301 247921301 C T OR1C1 Missense_Mutation p.M136I 0.16 deleterious(0.03) benign(0.006) TCGA-QB-A6FS-06 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.36 deleterious(0.02) benign(0.33) TCGA-QB-A6FS-06 1 248343782 248343782 C T OR2M2 Silent p.S165S 0.35 TCGA-QB-A6FS-06 1 248569579 248569579 T C OR2T1 Missense_Mutation p.M95T 0.50 deleterious(0) possibly_damaging(0.722) TCGA-QB-A6FS-06 1 24993376 24993376 C T SRRM1 Missense_Mutation p.P567S 0.22 unknown(0) TCGA-QB-A6FS-06 1 26158412 26158412 G A MTFR1L Silent p.L258L 0.15 TCGA-QB-A6FS-06 1 26515291 26515291 G A CNKSR1 Missense_Mutation p.M573I 0.17 tolerated(0.07) benign(0.004) TCGA-QB-A6FS-06 1 26570684 26570684 C T CEP85 Missense_Mutation p.S28F 0.25 tolerated(0.9) benign(0.005) TCGA-QB-A6FS-06 1 26691222 26691222 C T ZNF683 Missense_Mutation p.R272Q 0.21 tolerated(0.82) benign(0.001) TCGA-QB-A6FS-06 1 26883577 26883577 C T RPS6KA1 Missense_Mutation p.S366F 0.24 deleterious(0) probably_damaging(0.917) TCGA-QB-A6FS-06 1 27101404 27101404 C T ARID1A Silent p.P1562P 0.34 TCGA-QB-A6FS-06 1 28858691 28858691 C T RCC1 Silent p.S121S 0.25 TCGA-QB-A6FS-06 1 31349635 31349635 G A SDC3 Silent p.L212L 0.25 TCGA-QB-A6FS-06 1 34011799 34011799 C T CSMD2 Missense_Mutation p.G2836S 0.36 tolerated(1) probably_damaging(0.992) TCGA-QB-A6FS-06 1 34042940 34042940 G A CSMD2 Missense_Mutation p.P2513L 0.21 deleterious(0.04) possibly_damaging(0.862) TCGA-QB-A6FS-06 1 34204861 34204861 C T CSMD2 Missense_Mutation p.G710S 0.28 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 34285417 34285417 G A CSMD2 Silent p.F367F 0.14 TCGA-QB-A6FS-06 1 35260324 35260324 C T GJA4 Silent p.L170L 0.27 TCGA-QB-A6FS-06 1 36748260 36748260 C T THRAP3 Silent p.S32S 0.26 TCGA-QB-A6FS-06 1 36748261 36748261 C T THRAP3 Nonsense_Mutation p.R33* 0.26 TCGA-QB-A6FS-06 1 36859538 36859538 G T LSM10 Missense_Mutation p.H65N 0.22 tolerated(0.33) benign(0.048) TCGA-QB-A6FS-06 1 38288067 38288067 C T MTF1 Missense_Mutation p.G498E 0.28 tolerated(0.16) possibly_damaging(0.864) TCGA-QB-A6FS-06 1 40148196 40148196 C T HPCAL4 3'UTR 0.23 TCGA-QB-A6FS-06 1 42048299 42048299 C T HIVEP3 Missense_Mutation p.E724K 0.21 possibly_damaging(0.738) TCGA-QB-A6FS-06 1 43855557 43855557 C T SZT2 5'Flank 0.27 TCGA-QB-A6FS-06 1 45973169 45973169 C T MMACHC Silent p.L75L 0.08 TCGA-QB-A6FS-06 1 47365945 47365945 G A CYP4Z2P RNA 0.14 TCGA-QB-A6FS-06 1 47489651 47489651 C T CYP4X1 Silent p.F54F 0.22 TCGA-QB-A6FS-06 1 47505081 47505081 G A CYP4X1 Missense_Mutation p.G317E 0.31 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 1 47583536 47583536 C T CYP4Z1 Missense_Mutation p.P483L 0.29 tolerated(0.12) probably_damaging(0.975) TCGA-QB-A6FS-06 1 47685646 47685646 C T TAL1 Missense_Mutation p.E248K 0.29 deleterious(0.03) possibly_damaging(0.53) TCGA-QB-A6FS-06 1 4772720 4772720 G A AJAP1 Missense_Mutation p.E264K 0.15 tolerated(1) benign(0) TCGA-QB-A6FS-06 1 55118632 55118632 C T MROH7 Silent p.F11F 0.20 TCGA-QB-A6FS-06 1 55136553 55136553 C T MROH7 Missense_Mutation p.S517F 0.32 deleterious(0) probably_damaging(0.937) TCGA-QB-A6FS-06 1 6206387 6206387 C T CHD5 Missense_Mutation p.G563S 0.21 tolerated(0.45) benign(0.006) TCGA-QB-A6FS-06 1 62713308 62713308 C T KANK4 Missense_Mutation p.D907N 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-QB-A6FS-06 1 65684562 65684562 C T AK4 Missense_Mutation p.P131S 0.31 tolerated(0.61) benign(0.005) TCGA-QB-A6FS-06 1 6680248 6680248 C T PHF13 Missense_Mutation p.P176L 0.17 tolerated(0.31) benign(0.439) TCGA-QB-A6FS-06 1 67896100 67896100 C A SERBP1 5'Flank 0.22 TCGA-QB-A6FS-06 1 6885221 6885221 C G CAMTA1 Missense_Mutation p.P62R 0.30 deleterious(0) probably_damaging(0.997) TCGA-QB-A6FS-06 1 74492506 74492506 C T LRRIQ3 Silent p.L622L 0.28 TCGA-QB-A6FS-06 1 78399088 78399088 G A NEXN Missense_Mutation p.R392Q 0.26 tolerated(0.09) benign(0.291) TCGA-QB-A6FS-06 1 78958543 78958543 G A PTGFR Missense_Mutation p.V39M 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-QB-A6FS-06 1 78958662 78958662 C T PTGFR Silent p.F78F 0.21 TCGA-QB-A6FS-06 1 85331620 85331620 G A LPAR3 Missense_Mutation p.H62Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 1 94476464 94476464 G A ABCA4 Missense_Mutation p.P1869L 0.19 deleterious(0) possibly_damaging(0.449) TCGA-QB-A6FS-06 1 95639398 95639398 G A TMEM56 Silent p.G142G 0.16 TCGA-QB-A6FS-06 20 1459234 1459234 G A SIRPB2 Missense_Mutation p.P157L 0.49 tolerated(0.06) benign(0.14) TCGA-QB-A6FS-06 20 1617042 1617042 C T SIRPG Silent p.L180L 0.34 TCGA-QB-A6FS-06 20 1629800 1629800 T G SIRPG Missense_Mutation p.T110P 0.19 deleterious(0) probably_damaging(0.98) TCGA-QB-A6FS-06 20 16730523 16730523 G A OTOR Intron 0.31 TCGA-QB-A6FS-06 20 168662 168662 C T DEFB128 Silent p.G49G 0.33 TCGA-QB-A6FS-06 20 20246068 20246068 G A C20orf26 Intron 0.16 TCGA-QB-A6FS-06 20 20350531 20350531 C T INSM1 3'UTR 0.62 TCGA-QB-A6FS-06 20 30497647 30497647 C T TTLL9 Silent p.T142T 0.33 TCGA-QB-A6FS-06 20 30602799 30602799 G A CCM2L Silent p.S41S 0.18 TCGA-QB-A6FS-06 20 31016149 31016149 C T ASXL1 Missense_Mutation p.S132L 0.31 deleterious(0) probably_damaging(0.996) TCGA-QB-A6FS-06 20 31598888 31598888 C T BPIFB2 Silent p.F56F 0.19 TCGA-QB-A6FS-06 20 3218304 3218304 C T SLC4A11 Intron 0.19 TCGA-QB-A6FS-06 20 32354733 32354733 G A ZNF341 Silent p.P426P 0.18 TCGA-QB-A6FS-06 20 34022144 34022144 C T GDF5 Missense_Mutation p.E357K 0.42 deleterious(0) benign(0.175) TCGA-QB-A6FS-06 20 34618608 34618608 G A CNBD2 3'UTR 0.23 TCGA-QB-A6FS-06 20 34763552 34763552 C T EPB41L1 Missense_Mutation p.S86L 0.16 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 20 36149729 36149729 G A BLCAP 5'UTR 0.17 TCGA-QB-A6FS-06 20 36993331 36993331 G A LBP Silent p.S282S 0.36 TCGA-QB-A6FS-06 20 37580886 37580886 C T FAM83D Missense_Mutation p.P524L 0.19 tolerated(0.86) benign(0.003) TCGA-QB-A6FS-06 20 37581221 37581221 C T FAM83D 3'UTR 0.15 TCGA-QB-A6FS-06 20 40113090 40113090 G A CHD6 Missense_Mutation p.S720F 0.35 deleterious(0) possibly_damaging(0.798) TCGA-QB-A6FS-06 20 43743763 43743763 T C WFDC5 5'UTR 0.32 TCGA-QB-A6FS-06 20 43927066 43927066 C T MATN4 Silent p.S390S 0.17 TCGA-QB-A6FS-06 20 43932918 43932918 G A MATN4 Missense_Mutation p.S198F 0.19 probably_damaging(0.952) TCGA-QB-A6FS-06 20 44163099 44163099 C T WFDC6 3'UTR 0.31 TCGA-QB-A6FS-06 20 44333151 44333151 G A WFDC10B Missense_Mutation p.P42S 0.35 tolerated(0.08) benign(0.406) TCGA-QB-A6FS-06 20 44507259 44507259 C T ZSWIM3 Missense_Mutation p.P688S 0.35 tolerated_low_confidence(0.66) benign(0.002) TCGA-QB-A6FS-06 20 47989708 47989708 A T KCNB1 Missense_Mutation p.F797I 0.17 tolerated_low_confidence(0.11) benign(0.002) TCGA-QB-A6FS-06 20 48522674 48522674 G A SPATA2 Missense_Mutation p.R349W 0.34 tolerated(0.09) probably_damaging(0.997) TCGA-QB-A6FS-06 20 49621269 49621269 G A KCNG1 Silent p.F283F 0.55 TCGA-QB-A6FS-06 20 5283195 5283195 G A PROKR2 Nonsense_Mutation p.Q216* 0.34 TCGA-QB-A6FS-06 20 56227509 56227509 C G PMEPA1 Missense_Mutation p.G155A 0.06 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 20 57876598 57876598 C T EDN3 Silent p.G62G 0.15 TCGA-QB-A6FS-06 20 60908725 60908725 G T LAMA5 Missense_Mutation p.S972R 0.16 probably_damaging(0.993) TCGA-QB-A6FS-06 20 61510880 61510880 G A DIDO1 Missense_Mutation p.S2143F 0.20 benign(0.271) TCGA-QB-A6FS-06 20 62076610 62076610 C T KCNQ2 Silent p.R165R 0.13 TCGA-QB-A6FS-06 20 62192525 62192525 C T HELZ2 Silent p.L2352L 0.16 TCGA-QB-A6FS-06 20 62202043 62202043 G A HELZ2 Missense_Mutation p.L153F 0.21 tolerated(0.26) possibly_damaging(0.794) TCGA-QB-A6FS-06 20 62328320 62328320 C T TNFRSF6B Missense_Mutation p.P67L 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-QB-A6FS-06 20 744236 744236 G A SLC52A3 Silent p.L327L 0.34 TCGA-QB-A6FS-06 20 9288458 9288458 A G PLCB4 5'UTR 0.42 TCGA-QB-A6FS-06 20 9417781 9417781 G A PLCB4 Missense_Mutation p.G904S 0.26 tolerated(0.67) benign(0.046) TCGA-QB-A6FS-06 20 9453992 9453992 C T PLCB4 Silent p.L1147L 0.33 TCGA-QB-A6FS-06 21 30378700 30378700 G A RWDD2B 3'UTR 0.25 TCGA-QB-A6FS-06 21 32582490 32582490 G A TIAM1 Silent p.N753N 0.19 TCGA-QB-A6FS-06 21 36171685 36171685 G A RUNX1 Missense_Mutation p.P294S 0.29 deleterious(0.03) benign(0.009) TCGA-QB-A6FS-06 21 41385213 41385213 C T DSCAM Silent p.L1929L 0.20 TCGA-QB-A6FS-06 21 41385279 41385279 C T DSCAM Missense_Mutation p.M1907I 0.29 tolerated_low_confidence(0.12) benign(0.054) TCGA-QB-A6FS-06 21 41551013 41551013 C T DSCAM Missense_Mutation p.D930N 0.20 tolerated(0.08) benign(0.002) TCGA-QB-A6FS-06 21 41648069 41648069 C T DSCAM Missense_Mutation p.D771N 0.26 tolerated(0.16) benign(0.142) TCGA-QB-A6FS-06 21 41711176 41711176 G A DSCAM Silent p.I459I 0.24 TCGA-QB-A6FS-06 21 43523900 43523900 C T C21orf128 Nonsense_Mutation p.W111* 0.50 TCGA-QB-A6FS-06 21 43855000 43855000 G A UBASH3A Silent p.G443G 0.28 TCGA-QB-A6FS-06 21 45522840 45522840 C T TRAPPC10 Silent p.S1176S 0.22 TCGA-QB-A6FS-06 21 45970656 45970656 G A KRTAP10-2 Missense_Mutation p.S229F 0.16 deleterious(0) unknown(0) TCGA-QB-A6FS-06 22 18029019 18029019 C T CECR2 Missense_Mutation p.P1327S 0.34 tolerated(0.11) benign(0.04) TCGA-QB-A6FS-06 22 18070826 18070826 C T SLC25A18 Silent p.V237V 0.15 TCGA-QB-A6FS-06 22 19423218 19423218 G A MRPL40 Silent p.L118L 0.34 TCGA-QB-A6FS-06 22 23029622 23029622 G A IGLV3-25 Missense_Mutation p.G75E 0.36 deleterious(0.03) possibly_damaging(0.635) TCGA-QB-A6FS-06 22 23959838 23959838 G A C22orf43 Missense_Mutation p.S148F 0.31 deleterious_low_confidence(0.02) benign(0.111) TCGA-QB-A6FS-06 22 25019811 25019811 C T GGT1 Silent p.I316I 0.11 TCGA-QB-A6FS-06 22 26063727 26063727 G A ADRBK2 Missense_Mutation p.E155K 0.07 tolerated(0.56) benign(0.005) TCGA-QB-A6FS-06 22 29908045 29908045 C T THOC5 Missense_Mutation p.G588R 0.25 deleterious(0.01) benign(0.088) TCGA-QB-A6FS-06 22 31328554 31328554 C T MORC2 Missense_Mutation p.D847N 0.10 deleterious(0) probably_damaging(0.949) TCGA-QB-A6FS-06 22 31493300 31493300 C T SMTN Missense_Mutation p.S712F 0.52 tolerated(0.11) benign(0.025) TCGA-QB-A6FS-06 22 32753949 32753949 C T RFPL3 5'UTR 0.09 TCGA-QB-A6FS-06 22 37524490 37524490 G A IL2RB Silent p.L434L 0.08 TCGA-QB-A6FS-06 22 38120277 38120277 C G TRIOBP Missense_Mutation p.R572G 0.08 deleterious_low_confidence(0) benign(0.123) TCGA-QB-A6FS-06 22 38121136 38121136 C T TRIOBP Missense_Mutation p.S858F 0.13 deleterious_low_confidence(0.03) benign(0.017) TCGA-QB-A6FS-06 22 38509565 38509565 G A PLA2G6 Missense_Mutation p.P711S 0.13 deleterious(0) probably_damaging(0.992) TCGA-QB-A6FS-06 22 39078065 39078065 C T TOMM22 Missense_Mutation p.P28S 0.20 tolerated(0.26) benign(0.024) TCGA-QB-A6FS-06 22 39475066 39475066 G A APOBEC3G Silent p.L49L 0.17 TCGA-QB-A6FS-06 22 39475067 39475067 G A APOBEC3G Missense_Mutation p.D50N 0.17 tolerated(0.38) possibly_damaging(0.677) TCGA-QB-A6FS-06 22 40056421 40056421 G A CACNA1I Missense_Mutation p.E893K 0.49 tolerated(0.42) benign(0.292) TCGA-QB-A6FS-06 22 41322333 41322333 G A XPNPEP3 Missense_Mutation p.R473Q 0.16 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 22 43924767 43924767 G A EFCAB6 Missense_Mutation p.S1491F 0.42 deleterious(0.02) benign(0.272) TCGA-QB-A6FS-06 22 44168965 44168965 G A EFCAB6 Missense_Mutation p.P53L 0.41 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 22 46654205 46654205 C T PKDREJ Missense_Mutation p.R1672K 0.48 tolerated(0.84) benign(0.002) TCGA-QB-A6FS-06 22 46655306 46655306 C T PKDREJ Missense_Mutation p.R1305Q 0.43 tolerated(0.37) benign(0.035) TCGA-QB-A6FS-06 22 46657416 46657416 C T PKDREJ Missense_Mutation p.D602N 0.18 tolerated(0.23) benign(0.075) TCGA-QB-A6FS-06 22 46795729 46795729 C T CELSR1 Missense_Mutation p.G1766E 0.32 tolerated(0.23) benign(0.017) TCGA-QB-A6FS-06 22 46930172 46930172 G A CELSR1 Missense_Mutation p.L966F 0.17 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 22 50469154 50469154 C T TTLL8 Silent p.R652R 0.61 TCGA-QB-A6FS-06 22 50589250 50589250 G A MOV10L1 Silent p.L938L 0.13 TCGA-QB-A6FS-06 22 50987520 50987520 C T KLHDC7B Missense_Mutation p.P309S 0.42 tolerated(0.2) benign(0.266) TCGA-QB-A6FS-06 2 100170967 100170967 G A AFF3 Missense_Mutation p.P1147L 0.24 tolerated(1) possibly_damaging(0.765) TCGA-QB-A6FS-06 2 101606722 101606722 C T NPAS2 Missense_Mutation p.P611L 0.19 tolerated(0.14) benign(0.006) TCGA-QB-A6FS-06 2 101893659 101893659 A G RNF149 3'UTR 0.20 TCGA-QB-A6FS-06 2 101967361 101967361 A G CREG2 3'UTR 0.23 TCGA-QB-A6FS-06 2 103040381 103040381 C T IL18RAP Nonsense_Mutation p.R61* 0.16 TCGA-QB-A6FS-06 2 103059752 103059752 G A IL18RAP Missense_Mutation p.E297K 0.28 tolerated(0.61) benign(0.034) TCGA-QB-A6FS-06 2 108496545 108496545 C T RGPD4 Silent p.V1682V 0.20 TCGA-QB-A6FS-06 2 109398752 109398752 C T RANBP2 Nonsense_Mutation p.Q2977* 0.23 TCGA-QB-A6FS-06 2 113675236 113675236 C T IL37 Missense_Mutation p.S97F 0.20 tolerated(0.68) benign(0.308) TCGA-QB-A6FS-06 2 113675304 113675304 C T IL37 Missense_Mutation p.L120F 0.23 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 2 113786608 113786608 C T IL36B Missense_Mutation p.E57K 0.22 tolerated_low_confidence(0.94) benign(0.009) TCGA-QB-A6FS-06 2 11733242 11733242 C T GREB1 Silent p.I562I 0.28 TCGA-QB-A6FS-06 2 121107067 121107067 C T INHBB Missense_Mutation p.R281W 0.21 deleterious(0) probably_damaging(0.969) TCGA-QB-A6FS-06 2 127950744 127950744 G A CYP27C1 Missense_Mutation p.P310S 0.32 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 2 128178999 128178999 G A PROC Missense_Mutation p.E71K 0.29 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 2 131103684 131103684 C T IMP4 Missense_Mutation p.R230W 0.21 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 2 131840213 131840213 G A FAM168B Missense_Mutation p.P3S 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-QB-A6FS-06 2 132258981 132258981 C T AC093838.4 RNA 0.24 TCGA-QB-A6FS-06 2 133175089 133175089 C T GPR39 Silent p.F158F 0.27 TCGA-QB-A6FS-06 2 135625235 135625235 G A ACMSD Nonsense_Mutation p.W191* 0.24 TCGA-QB-A6FS-06 2 136481533 136481533 G A R3HDM1 Missense_Mutation p.E991K 0.26 deleterious(0) benign(0.359) TCGA-QB-A6FS-06 2 136562446 136562446 G A LCT Missense_Mutation p.S1452F 0.24 deleterious(0) probably_damaging(0.992) TCGA-QB-A6FS-06 2 138330043 138330043 C T THSD7B Missense_Mutation p.P1117S 0.20 deleterious(0) unknown(0) TCGA-QB-A6FS-06 2 141232874 141232874 G A LRP1B Missense_Mutation p.P3153L 0.34 possibly_damaging(0.713) TCGA-QB-A6FS-06 2 141777598 141777598 C T LRP1B Silent p.R621R 0.24 TCGA-QB-A6FS-06 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.30 possibly_damaging(0.553) TCGA-QB-A6FS-06 2 148683722 148683722 A T ACVR2A Nonsense_Mutation p.K447* 0.19 TCGA-QB-A6FS-06 2 159519586 159519586 C T PKP4 Missense_Mutation p.P797S 0.27 tolerated(0.89) benign(0.001) TCGA-QB-A6FS-06 2 160205548 160205548 C T BAZ2B Missense_Mutation p.D1703N 0.15 probably_damaging(0.999) TCGA-QB-A6FS-06 2 160637469 160637469 A C LY75-CD302 Silent p.A1714A 0.18 TCGA-QB-A6FS-06 2 165956887 165956887 G A SCN3A Silent p.L1297L 0.24 TCGA-QB-A6FS-06 2 166892578 166892578 C T SCN1A Missense_Mutation p.D1137N 0.17 tolerated(0.08) probably_damaging(0.973) TCGA-QB-A6FS-06 2 170062935 170062935 C T LRP2 Missense_Mutation p.R2432K 0.22 possibly_damaging(0.859) TCGA-QB-A6FS-06 2 175986250 175986250 G A ATF2 Missense_Mutation p.H41Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-QB-A6FS-06 2 178769886 178769886 C T PDE11A Missense_Mutation p.G367E 0.24 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 2 179226415 179226415 C T OSBPL6 Missense_Mutation p.S412F 0.27 tolerated(0.33) probably_damaging(0.999) TCGA-QB-A6FS-06 2 179408960 179408960 G A TTN Missense_Mutation p.S31999L 0.25 TCGA-QB-A6FS-06 2 179410839 179410839 G A TTN Silent p.S31708S 0.18 TCGA-QB-A6FS-06 2 179424820 179424820 C T TTN Missense_Mutation p.G28680E 0.23 TCGA-QB-A6FS-06 2 179433100 179433100 C T TTN Missense_Mutation p.G25920D 0.23 TCGA-QB-A6FS-06 2 179438227 179438227 G A TTN Missense_Mutation p.S24211L 0.32 TCGA-QB-A6FS-06 2 179476580 179476580 C T TTN Missense_Mutation p.G16819E 0.26 TCGA-QB-A6FS-06 2 179481277 179481277 C T TTN Missense_Mutation p.D16081N 0.19 TCGA-QB-A6FS-06 2 179494147 179494147 G A TTN Missense_Mutation p.P14769S 0.16 TCGA-QB-A6FS-06 2 179579962 179579962 G A TTN Missense_Mutation p.P8651S 0.25 TCGA-QB-A6FS-06 2 179595093 179595093 G A TTN Missense_Mutation p.P6012S 0.15 TCGA-QB-A6FS-06 2 179614127 179614127 G A TTN Intron 0.22 TCGA-QB-A6FS-06 2 179634931 179634931 C T TTN Missense_Mutation p.E2833K 0.20 TCGA-QB-A6FS-06 2 179648464 179648464 G A TTN Missense_Mutation p.P942S 0.27 TCGA-QB-A6FS-06 2 182414409 182414409 G A CERKL Missense_Mutation p.L309F 0.17 tolerated(0.06) benign(0.364) TCGA-QB-A6FS-06 2 185803068 185803068 G A ZNF804A Missense_Mutation p.G982E 0.19 tolerated(0.56) probably_damaging(0.998) TCGA-QB-A6FS-06 2 189870145 189870145 C T COL3A1 Missense_Mutation p.P1001S 0.19 probably_damaging(0.999) TCGA-QB-A6FS-06 2 1906863 1906863 C T MYT1L Missense_Mutation p.G672E 0.21 deleterious(0.01) possibly_damaging(0.598) TCGA-QB-A6FS-06 2 19552122 19552122 C T OSR1 Missense_Mutation p.G239R 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-QB-A6FS-06 2 196749451 196749451 C T DNAH7 Missense_Mutation p.R1874Q 0.24 deleterious(0) possibly_damaging(0.673) TCGA-QB-A6FS-06 2 197183810 197183810 C T HECW2 Missense_Mutation p.D602N 0.20 tolerated_low_confidence(0.09) benign(0.357) TCGA-QB-A6FS-06 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.17 tolerated(0.12) benign(0.043) TCGA-QB-A6FS-06 2 203149128 203149128 C T NOP58 Missense_Mutation p.R120C 0.20 deleterious(0) benign(0.439) TCGA-QB-A6FS-06 2 207413062 207413062 G A ADAM23 Missense_Mutation p.R284K 0.21 tolerated(0.6) benign(0.007) TCGA-QB-A6FS-06 2 209045498 209045498 C T C2orf80 Missense_Mutation p.D113N 0.29 tolerated(0.68) benign(0.009) TCGA-QB-A6FS-06 2 211460236 211460236 C T CPS1 Missense_Mutation p.S436L 0.22 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 2 21231652 21231652 C T APOB Silent p.L2696L 0.19 TCGA-QB-A6FS-06 2 216230322 216230322 C T FN1 Silent p.K2350K 0.21 TCGA-QB-A6FS-06 2 219029610 219029610 G A CXCR1 Silent p.L109L 0.25 TCGA-QB-A6FS-06 2 219561836 219561836 G A STK36 Missense_Mutation p.M887I 0.20 tolerated(0.24) benign(0.269) TCGA-QB-A6FS-06 2 219561883 219561883 C T STK36 Missense_Mutation p.S903L 0.22 tolerated(0.2) benign(0.003) TCGA-QB-A6FS-06 2 219695497 219695497 C T PRKAG3 Silent p.E67E 0.24 TCGA-QB-A6FS-06 2 219920173 219920173 G A IHH Missense_Mutation p.P331L 0.18 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 2 220432650 220432650 C T OBSL1 Missense_Mutation p.E442K 0.23 deleterious(0) probably_damaging(0.987) TCGA-QB-A6FS-06 2 220479908 220479908 C T STK11IP Missense_Mutation p.P999S 0.21 tolerated(0.69) benign(0.001) TCGA-QB-A6FS-06 2 227924234 227924234 C T COL4A4 Missense_Mutation p.G757E 0.19 probably_damaging(0.972) TCGA-QB-A6FS-06 2 227958964 227958964 G A COL4A4 Missense_Mutation p.P416S 0.26 probably_damaging(0.96) TCGA-QB-A6FS-06 2 229993 229993 G A SH3YL1 Missense_Mutation p.P252S 0.20 tolerated(0.48) benign(0) TCGA-QB-A6FS-06 2 230911020 230911020 C T SLC16A14 Silent p.R274R 0.19 TCGA-QB-A6FS-06 2 232390018 232390018 G A NMUR1 Silent p.V339V 0.22 TCGA-QB-A6FS-06 2 233323624 233323624 G A ALPI Missense_Mutation p.G452E 0.19 deleterious(0) probably_damaging(0.939) TCGA-QB-A6FS-06 2 233349920 233349920 C T ECEL1 Missense_Mutation p.D282N 0.30 tolerated(0.63) benign(0.065) TCGA-QB-A6FS-06 2 233899037 233899037 C T NEU2 Missense_Mutation p.S138F 0.12 deleterious(0.01) benign(0.216) TCGA-QB-A6FS-06 2 234638020 234638020 C T UGT1A3 Missense_Mutation p.S83L 0.20 deleterious(0.02) benign(0.105) TCGA-QB-A6FS-06 2 234652465 234652465 T C UGT1A10 Intron 0.20 TCGA-QB-A6FS-06 2 234967584 234967584 C T SPP2 Silent p.F105F 0.27 TCGA-QB-A6FS-06 2 238285621 238285621 C T COL6A3 Missense_Mutation p.R955H 0.22 benign(0.063) TCGA-QB-A6FS-06 2 238285986 238285986 C T COL6A3 Silent p.E833E 0.32 TCGA-QB-A6FS-06 2 238726810 238726810 C T RBM44 Silent p.I417I 0.28 TCGA-QB-A6FS-06 2 241535900 241535900 C T CAPN10 Silent p.F481F 0.21 TCGA-QB-A6FS-06 2 241631351 241631351 C T AQP12A Silent p.S7S 0.16 TCGA-QB-A6FS-06 2 242139641 242139641 G A ANO7 Splice_Site p.X239_splice 0.16 TCGA-QB-A6FS-06 2 24522949 24522949 C T ITSN2 Silent p.R391R 0.23 TCGA-QB-A6FS-06 2 25976476 25976476 G A ASXL2 Nonsense_Mutation p.R357* 0.23 TCGA-QB-A6FS-06 2 26950833 26950833 C T KCNK3 Silent p.F194F 0.22 TCGA-QB-A6FS-06 2 27249224 27249224 C T MAPRE3 3'UTR 0.10 TCGA-QB-A6FS-06 2 27456642 27456642 C T CAD Missense_Mutation p.P1122L 0.22 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 2 28796068 28796068 C T PLB1 Silent p.I443I 0.17 TCGA-QB-A6FS-06 2 31570434 31570434 G A XDH Missense_Mutation p.P1077L 0.23 tolerated(0.11) possibly_damaging(0.904) TCGA-QB-A6FS-06 2 33622330 33622330 G A LTBP1 Silent p.T1655T 0.20 TCGA-QB-A6FS-06 2 3660912 3660912 G A COLEC11 Missense_Mutation p.E62K 0.17 tolerated(0.09) benign(0.138) TCGA-QB-A6FS-06 2 37415691 37415691 C T SULT6B1 5'Flank 0.27 TCGA-QB-A6FS-06 2 46987054 46987054 C T SOCS5 Missense_Mutation p.P462L 0.15 deleterious(0) probably_damaging(0.99) TCGA-QB-A6FS-06 2 55549782 55549782 C T CCDC88A Missense_Mutation p.R1014K 0.21 tolerated(0.78) benign(0.003) TCGA-QB-A6FS-06 2 61331072 61331072 T C KIAA1841 Silent p.L484L 0.19 TCGA-QB-A6FS-06 2 71747918 71747918 G A DYSF Splice_Site p.X345_splice 0.25 TCGA-QB-A6FS-06 2 74274546 74274546 C T TET3 Missense_Mutation p.P366L 0.32 tolerated(0.19) benign(0.002) TCGA-QB-A6FS-06 2 80620361 80620361 C T CTNNA2 Missense_Mutation p.P361L 0.15 tolerated(0.3) benign(0.002) TCGA-QB-A6FS-06 2 84800702 84800702 C T DNAH6 Nonsense_Mutation p.Q639* 0.17 TCGA-QB-A6FS-06 2 85571211 85571211 G A RETSAT Missense_Mutation p.R482W 0.18 deleterious(0) possibly_damaging(0.521) TCGA-QB-A6FS-06 2 85981884 85981884 C T ATOH8 Missense_Mutation p.S191F 0.24 deleterious(0) probably_damaging(0.915) TCGA-QB-A6FS-06 2 88874525 88874525 G A EIF2AK3 Nonsense_Mutation p.R826* 0.33 TCGA-QB-A6FS-06 2 89442297 89442297 C T IGKV3-20 Silent p.G36G 0.15 TCGA-QB-A6FS-06 3 102195860 102195860 G A ZPLD1 Silent p.E365E 0.22 TCGA-QB-A6FS-06 3 10430069 10430069 C T ATP2B2 Missense_Mutation p.G267S 0.25 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 3 105438935 105438935 G A CBLB Missense_Mutation p.R455C 0.21 deleterious(0.01) possibly_damaging(0.872) TCGA-QB-A6FS-06 3 108072513 108072513 G T HHLA2 Missense_Mutation p.G102W 0.15 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 3 108129775 108129775 C T MYH15 Missense_Mutation p.E1404K 0.30 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 3 108220569 108220569 C T MYH15 Nonsense_Mutation p.W130* 0.27 TCGA-QB-A6FS-06 3 108476034 108476034 C T RETNLB 5'UTR 0.10 TCGA-QB-A6FS-06 3 11058885 11058885 C T SLC6A1 5'UTR 0.12 TCGA-QB-A6FS-06 3 11059101 11059101 G A SLC6A1 Nonsense_Mutation p.W68* 0.18 TCGA-QB-A6FS-06 3 111981904 111981904 A G SLC9C1 Missense_Mutation p.V355A 0.15 deleterious(0.01) benign(0.324) TCGA-QB-A6FS-06 3 112324446 112324446 C T CCDC80 Missense_Mutation p.D891N 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-QB-A6FS-06 3 119109765 119109765 C T ARHGAP31 Silent p.S272S 0.14 TCGA-QB-A6FS-06 3 119336969 119336969 G A PLA1A Silent p.K286K 0.20 TCGA-QB-A6FS-06 3 119526124 119526124 G A NR1I2 Nonsense_Mutation p.W48* 0.15 TCGA-QB-A6FS-06 3 120977966 120977966 G A STXBP5L Missense_Mutation p.E637K 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-QB-A6FS-06 3 120998772 120998772 G A STXBP5L Silent p.R693R 0.12 TCGA-QB-A6FS-06 3 121097679 121097679 C T STXBP5L Nonsense_Mutation p.R789* 0.17 TCGA-QB-A6FS-06 3 121305409 121305409 C T ARGFX Nonsense_Mutation p.Q304* 0.25 TCGA-QB-A6FS-06 3 121350826 121350826 C T HCLS1 Missense_Mutation p.G443E 0.19 deleterious(0) probably_damaging(0.982) TCGA-QB-A6FS-06 3 121720627 121720627 C T ILDR1 Missense_Mutation p.G155E 0.25 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 3 121976029 121976029 G A CASR Missense_Mutation p.R96K 0.18 tolerated(0.48) benign(0.047) TCGA-QB-A6FS-06 3 122003792 122003792 C T CASR Silent p.S1007S 0.21 TCGA-QB-A6FS-06 3 127411060 127411060 C T MGLL Missense_Mutation p.G308E 0.23 tolerated_low_confidence(0.07) benign(0.007) TCGA-QB-A6FS-06 3 127454583 127454583 C T MGLL Intron 0.17 TCGA-QB-A6FS-06 3 12857995 12857995 C T CAND2 Missense_Mutation p.L522F 0.18 deleterious(0.01) possibly_damaging(0.821) TCGA-QB-A6FS-06 3 128628208 128628208 G A ACAD9 Missense_Mutation p.E503K 0.15 tolerated(0.86) benign(0.01) TCGA-QB-A6FS-06 3 141526512 141526512 C T GRK7 Missense_Mutation p.P359L 0.26 deleterious(0) probably_damaging(0.982) TCGA-QB-A6FS-06 3 148939590 148939590 T A CP 5'UTR 0.24 TCGA-QB-A6FS-06 3 150645820 150645820 A T CLRN1 Missense_Mutation p.L214Q 0.29 deleterious(0) probably_damaging(0.985) TCGA-QB-A6FS-06 3 151107868 151107868 C T MED12L Silent p.L1816L 0.18 TCGA-QB-A6FS-06 3 155198922 155198922 C T PLCH1 Silent p.L1639L 0.23 TCGA-QB-A6FS-06 3 155212306 155212306 C T PLCH1 Missense_Mutation p.G620E 0.21 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 3 155632257 155632257 A T GMPS Silent p.I312I 0.21 TCGA-QB-A6FS-06 3 155632259 155632259 C T GMPS Missense_Mutation p.S313L 0.21 tolerated(0.24) benign(0.021) TCGA-QB-A6FS-06 3 164764781 164764781 G A SI Missense_Mutation p.P579S 0.27 tolerated(0.11) benign(0.015) TCGA-QB-A6FS-06 3 170216647 170216647 G T SLC7A14 Missense_Mutation p.L190I 0.26 tolerated(0.21) benign(0.042) TCGA-QB-A6FS-06 3 172163026 172163026 G A GHSR Silent p.P342P 0.20 TCGA-QB-A6FS-06 3 175189508 175189508 C T NAALADL2 Missense_Mutation p.P539S 0.36 tolerated(0.71) benign(0.016) TCGA-QB-A6FS-06 3 179333833 179333833 C T NDUFB5 Silent p.F92F 0.32 TCGA-QB-A6FS-06 3 180359867 180359867 C T CCDC39 Missense_Mutation p.M596I 0.21 tolerated(0.42) benign(0.016) TCGA-QB-A6FS-06 3 182853661 182853661 C T LAMP3 Missense_Mutation p.G321R 0.20 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 3 185997694 185997694 G A DGKG Silent p.V246V 0.23 TCGA-QB-A6FS-06 3 186572002 186572002 G A ADIPOQ Missense_Mutation p.E82K 0.34 tolerated(0.31) benign(0.057) TCGA-QB-A6FS-06 3 187419978 187419978 G A RTP2 5'UTR 0.27 TCGA-QB-A6FS-06 3 190106190 190106190 C T CLDN16 Silent p.T94T 0.21 TCGA-QB-A6FS-06 3 193048987 193048987 C T ATP13A5 Silent p.K462K 0.30 TCGA-QB-A6FS-06 3 193185208 193185208 C T ATP13A4 Silent p.Q337Q 0.24 TCGA-QB-A6FS-06 3 194062946 194062946 C T CPN2 Silent p.R162R 0.31 TCGA-QB-A6FS-06 3 194080729 194080729 G A LRRC15 Silent p.L354L 0.21 TCGA-QB-A6FS-06 3 195516761 195516761 G A MUC4 Nonsense_Mutation p.Q564* 0.22 TCGA-QB-A6FS-06 3 196388621 196388621 C T NRROS 3'UTR 0.15 TCGA-QB-A6FS-06 3 197495333 197495333 C T FYTTD1 Missense_Mutation p.R87C 0.25 deleterious(0) possibly_damaging(0.863) TCGA-QB-A6FS-06 3 21552450 21552450 C T ZNF385D Missense_Mutation p.M114I 0.15 tolerated(0.37) benign(0.004) TCGA-QB-A6FS-06 3 27762916 27762916 C T EOMES Silent p.T290T 0.27 TCGA-QB-A6FS-06 3 36778804 36778804 G A DCLK3 Silent p.F449F 0.22 TCGA-QB-A6FS-06 3 36872408 36872408 G A TRANK1 Missense_Mutation p.S2845L 0.26 tolerated(0.67) benign(0.003) TCGA-QB-A6FS-06 3 36873937 36873937 C T TRANK1 Silent p.R2335R 0.16 TCGA-QB-A6FS-06 3 36874674 36874674 G A TRANK1 Missense_Mutation p.P2090S 0.33 tolerated(0.26) benign(0.211) TCGA-QB-A6FS-06 3 36897322 36897322 C T TRANK1 Silent p.V1253V 0.20 TCGA-QB-A6FS-06 3 36898910 36898910 C T TRANK1 Missense_Mutation p.G724E 0.25 tolerated(1) benign(0.003) TCGA-QB-A6FS-06 3 38622578 38622578 C T SCN5A Silent p.K1024K 0.16 TCGA-QB-A6FS-06 3 38627279 38627279 C T SCN5A Missense_Mutation p.G897E 0.28 deleterious(0) probably_damaging(0.996) TCGA-QB-A6FS-06 3 38674644 38674644 G A SCN5A Missense_Mutation p.P52L 0.19 tolerated(0.19) benign(0.017) TCGA-QB-A6FS-06 3 38797432 38797432 C T SCN10A Silent p.G436G 0.22 TCGA-QB-A6FS-06 3 3887648 3887648 G A LRRN1 Silent p.T441T 0.24 TCGA-QB-A6FS-06 3 39431045 39431045 C T SLC25A38 Silent p.L43L 0.28 TCGA-QB-A6FS-06 3 42734240 42734240 C T HHATL 3'UTR 0.23 TCGA-QB-A6FS-06 3 42906852 42906852 C T ACKR2 Silent p.V286V 0.22 TCGA-QB-A6FS-06 3 44684804 44684804 C T ZNF197 Missense_Mutation p.H728Y 0.19 deleterious(0) probably_damaging(0.984) TCGA-QB-A6FS-06 3 45583412 45583412 C T LARS2 Silent p.F832F 0.24 TCGA-QB-A6FS-06 3 46539575 46539575 G A RTP3 Nonsense_Mutation p.W8* 0.16 TCGA-QB-A6FS-06 3 47289519 47289519 G A KIF9 Missense_Mutation p.H373Y 0.14 tolerated(0.06) benign(0.411) TCGA-QB-A6FS-06 3 47289520 47289520 G A KIF9 Silent p.I372I 0.14 TCGA-QB-A6FS-06 3 48423328 48423328 G A FBXW12 Missense_Mutation p.R375Q 0.29 tolerated(0.37) benign(0.002) TCGA-QB-A6FS-06 3 48659055 48659055 C A TMEM89 Silent p.V45V 0.21 TCGA-QB-A6FS-06 3 48667522 48667522 G A SLC26A6 Silent p.S465S 0.21 TCGA-QB-A6FS-06 3 48728832 48728832 G A IP6K2 Missense_Mutation p.S171F 0.24 deleterious(0.03) benign(0.367) TCGA-QB-A6FS-06 3 50404029 50404029 C T CACNA2D2 Missense_Mutation p.D880N 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-QB-A6FS-06 3 52554222 52554222 C T STAB1 Silent p.A1805A 0.17 TCGA-QB-A6FS-06 3 52848312 52848312 G A ITIH4 Silent p.L847L 0.18 TCGA-QB-A6FS-06 3 53264508 53264508 G A TKT Missense_Mutation p.R366C 0.22 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 3 54914871 54914871 G A CACNA2D3 Silent p.G631G 0.19 TCGA-QB-A6FS-06 3 54921988 54921988 G A CACNA2D3 Missense_Mutation p.D687N 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-QB-A6FS-06 3 56026099 56026099 G A ERC2 Silent p.I747I 0.14 TCGA-QB-A6FS-06 3 56468778 56468778 T A ERC2 Silent p.T86T 0.23 TCGA-QB-A6FS-06 3 57131659 57131659 G A IL17RD Missense_Mutation p.S691F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QB-A6FS-06 3 66433646 66433646 G A LRIG1 Nonsense_Mutation p.Q751* 0.16 TCGA-QB-A6FS-06 3 66465411 66465411 G A LRIG1 Missense_Mutation p.R194C 0.23 deleterious(0) probably_damaging(0.985) TCGA-QB-A6FS-06 3 68788229 68788229 C T FAM19A4 Silent p.T136T 0.24 TCGA-QB-A6FS-06 3 7494463 7494463 G A GRM7 Silent p.L448L 0.25 TCGA-QB-A6FS-06 3 9057341 9057341 G A SRGAP3 Nonsense_Mutation p.R585* 0.27 TCGA-QB-A6FS-06 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.18 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 3 98109721 98109721 C T OR5K3 Missense_Mutation p.S71F 0.26 deleterious(0.02) benign(0.052) TCGA-QB-A6FS-06 3 99513111 99513111 C T COL8A1 Silent p.P122P 0.10 TCGA-QB-A6FS-06 3 99513678 99513678 G A COL8A1 Silent p.G311G 0.27 TCGA-QB-A6FS-06 4 100341910 100341910 C T ADH7 Missense_Mutation p.G222E 0.26 deleterious(0) probably_damaging(0.975) TCGA-QB-A6FS-06 4 110763674 110763674 C T RRH Missense_Mutation p.S257F 0.18 deleterious(0) possibly_damaging(0.908) TCGA-QB-A6FS-06 4 111430824 111430824 C T ENPEP Missense_Mutation p.P352L 0.27 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 4 111539771 111539771 C T PITX2 Missense_Mutation p.G162D 0.23 deleterious(0.01) probably_damaging(0.92) TCGA-QB-A6FS-06 4 114823558 114823558 C T ARSJ Missense_Mutation p.E558K 0.19 deleterious(0.05) benign(0.292) TCGA-QB-A6FS-06 4 126240210 126240210 A C FAT4 Missense_Mutation p.T882P 0.23 probably_damaging(1) TCGA-QB-A6FS-06 4 126240611 126240611 C T FAT4 Silent p.F1015F 0.27 TCGA-QB-A6FS-06 4 126336588 126336588 C T FAT4 Missense_Mutation p.A2157V 0.29 benign(0.011) TCGA-QB-A6FS-06 4 138442600 138442600 C T PCDH18 Silent p.G997G 0.19 TCGA-QB-A6FS-06 4 138452578 138452578 C T PCDH18 Missense_Mutation p.G222E 0.26 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 4 139140442 139140442 C T SLC7A11 Missense_Mutation p.G242R 0.22 deleterious(0) probably_damaging(0.98) TCGA-QB-A6FS-06 4 141889014 141889014 G A RNF150 Silent p.I166I 0.15 TCGA-QB-A6FS-06 4 145038046 145038046 C T GYPA Silent p.T106T 0.12 TCGA-QB-A6FS-06 4 145580082 145580082 G A HHIP Missense_Mutation p.V205M 0.22 tolerated(0.1) benign(0.3) TCGA-QB-A6FS-06 4 145633213 145633213 G A HHIP Silent p.G471G 0.24 TCGA-QB-A6FS-06 4 146030294 146030294 C T ABCE1 Missense_Mutation p.P100S 0.17 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 4 153574062 153574062 C T TMEM154 Missense_Mutation p.E28K 0.33 tolerated(0.05) possibly_damaging(0.801) TCGA-QB-A6FS-06 4 153809310 153809310 G A ARFIP1 Missense_Mutation p.D273N 0.13 deleterious(0) probably_damaging(0.977) TCGA-QB-A6FS-06 4 153896276 153896276 C T FHDC1 Silent p.A611A 0.18 TCGA-QB-A6FS-06 4 155219524 155219524 G A DCHS2 Missense_Mutation p.T1526I 0.29 deleterious(0.03) benign(0.257) TCGA-QB-A6FS-06 4 156294386 156294386 G A MAP9 Missense_Mutation p.S128F 0.19 tolerated(0.09) benign(0.009) TCGA-QB-A6FS-06 4 159076804 159076804 G A FAM198B Missense_Mutation p.H370Y 0.21 tolerated(0.44) benign(0.291) TCGA-QB-A6FS-06 4 183721336 183721336 G A TENM3 Silent p.E2644E 0.19 TCGA-QB-A6FS-06 4 183721337 183721337 G A TENM3 Missense_Mutation p.E2645K 0.19 tolerated(0.06) possibly_damaging(0.636) TCGA-QB-A6FS-06 4 185687872 185687872 G A ACSL1 Silent p.L389L 0.26 TCGA-QB-A6FS-06 4 187122362 187122362 G A CYP4V2 Missense_Mutation p.D285N 0.24 tolerated(0.31) benign(0.013) TCGA-QB-A6FS-06 4 189012767 189012767 C T TRIML2 Silent p.L308L 0.18 TCGA-QB-A6FS-06 4 1957788 1957788 C T WHSC1 Silent p.F918F 0.21 TCGA-QB-A6FS-06 4 20620541 20620541 G A SLIT2 Missense_Mutation p.R1500Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-QB-A6FS-06 4 3251111 3251111 C T MSANTD1 Silent p.L54L 0.46 TCGA-QB-A6FS-06 4 3441294 3441294 C T RGS12 Silent p.G1409G 0.22 TCGA-QB-A6FS-06 4 39891957 39891957 G A PDS5A Missense_Mutation p.P600S 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-QB-A6FS-06 4 40440146 40440146 G A RBM47 Silent p.I255I 0.20 TCGA-QB-A6FS-06 4 436992 436992 G A ZNF721 Missense_Mutation p.R422C 0.24 tolerated(1) benign(0) TCGA-QB-A6FS-06 4 46099233 46099233 G A GABRG1 Missense_Mutation p.R80C 0.26 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 4 47556871 47556871 C T ATP10D Silent p.F588F 0.16 TCGA-QB-A6FS-06 4 47578885 47578885 C A ATP10D Silent p.L1154L 0.27 TCGA-QB-A6FS-06 4 47808954 47808954 G A CORIN Silent p.L58L 0.16 TCGA-QB-A6FS-06 4 48567570 48567570 C T FRYL Missense_Mutation p.R1103K 0.27 tolerated(0.26) benign(0.339) TCGA-QB-A6FS-06 4 49032908 49032908 C T CWH43 Missense_Mutation p.T480I 0.26 deleterious(0.03) benign(0.361) TCGA-QB-A6FS-06 4 54256001 54256001 C T FIP1L1 Missense_Mutation p.L120F 0.14 tolerated(0.08) probably_damaging(0.988) TCGA-QB-A6FS-06 4 55955966 55955966 G A KDR Missense_Mutation p.R1066C 0.20 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 4 651188 651188 G A PDE6B Missense_Mutation p.D436N 0.37 deleterious(0) probably_damaging(0.986) TCGA-QB-A6FS-06 4 69433643 69433643 C T UGT2B17 Missense_Mutation p.G187E 0.15 deleterious(0.04) benign(0.258) TCGA-QB-A6FS-06 4 69512746 69512746 C T UGT2B15 3'UTR 0.17 TCGA-QB-A6FS-06 4 69682129 69682129 C T UGT2B10 Missense_Mutation p.S131L 0.18 tolerated(0.93) benign(0.004) TCGA-QB-A6FS-06 4 70361202 70361202 G A UGT2B4 Silent p.F126F 0.24 TCGA-QB-A6FS-06 4 70721061 70721061 G A SULT1E1 Nonsense_Mutation p.R77* 0.11 TCGA-QB-A6FS-06 4 70921242 70921242 C T HTN1 Missense_Mutation p.P44S 0.26 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-QB-A6FS-06 4 74313371 74313371 G A AFP Missense_Mutation p.E346K 0.16 tolerated(0.05) possibly_damaging(0.811) TCGA-QB-A6FS-06 4 74450975 74450975 C T RASSF6 Silent p.R195R 0.18 TCGA-QB-A6FS-06 4 75485899 75485899 G A AREGB Missense_Mutation p.M186I 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-QB-A6FS-06 4 76551162 76551162 T C CDKL2 Missense_Mutation p.Y4C 0.18 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 4 77244459 77244459 G A CCDC158 Silent p.N1087N 0.22 TCGA-QB-A6FS-06 4 7774577 7774577 G A AFAP1 Silent p.I741I 0.18 TCGA-QB-A6FS-06 4 79351564 79351564 G A FRAS1 Missense_Mutation p.M1654I 0.22 benign(0.059) TCGA-QB-A6FS-06 4 79366681 79366681 C T FRAS1 Missense_Mutation p.R1891C 0.25 possibly_damaging(0.582) TCGA-QB-A6FS-06 4 79372965 79372965 G A FRAS1 Missense_Mutation p.G2168E 0.13 probably_damaging(1) TCGA-QB-A6FS-06 4 79391213 79391213 G A FRAS1 Missense_Mutation p.G2447R 0.32 probably_damaging(0.997) TCGA-QB-A6FS-06 4 82065402 82065402 C T PRKG2 Missense_Mutation p.E413K 0.22 tolerated(0.21) benign(0.009) TCGA-QB-A6FS-06 4 8477774 8477774 G A TRMT44 3'UTR 0.18 TCGA-QB-A6FS-06 4 8608532 8608532 C T CPZ Silent p.F325F 0.25 TCGA-QB-A6FS-06 4 88533577 88533577 G A DSPP Missense_Mutation p.G80E 0.26 possibly_damaging(0.512) TCGA-QB-A6FS-06 4 88533578 88533578 G A DSPP Silent p.G80G 0.26 TCGA-QB-A6FS-06 4 89579580 89579580 C T HERC3 Missense_Mutation p.H362Y 0.25 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 4 91701696 91701696 G A CCSER1 Intron 0.21 TCGA-QB-A6FS-06 5 101834386 101834386 G A SLCO6A1 Missense_Mutation p.P55S 0.20 tolerated(0.09) probably_damaging(0.996) TCGA-QB-A6FS-06 5 110097045 110097045 C T SLC25A46 Missense_Mutation p.L274F 0.22 tolerated(0.11) benign(0.035) TCGA-QB-A6FS-06 5 11117571 11117571 G A CTNND2 Silent p.I756I 0.26 TCGA-QB-A6FS-06 5 112176169 112176169 C T APC Silent p.P1626P 0.17 TCGA-QB-A6FS-06 5 112228216 112228216 G A ZRSR1 Missense_Mutation p.G294R 0.13 deleterious(0) probably_damaging(0.995) TCGA-QB-A6FS-06 5 112228217 112228217 G A ZRSR1 Missense_Mutation p.G294E 0.13 deleterious(0) probably_damaging(0.997) TCGA-QB-A6FS-06 5 11384956 11384956 G A CTNND2 Missense_Mutation p.S333L 0.30 tolerated(0.06) benign(0.217) TCGA-QB-A6FS-06 5 11732252 11732252 T C CTNND2 Missense_Mutation p.E57G 0.17 deleterious(0) possibly_damaging(0.71) TCGA-QB-A6FS-06 5 11732253 11732253 C T CTNND2 Missense_Mutation p.E57K 0.15 deleterious(0) possibly_damaging(0.597) TCGA-QB-A6FS-06 5 132086664 132086664 G A CCNI2 Missense_Mutation p.G250E 0.17 deleterious(0.01) benign(0.085) TCGA-QB-A6FS-06 5 132101139 132101139 G A SEPT8 Missense_Mutation p.S38L 0.24 deleterious(0.01) benign(0.017) TCGA-QB-A6FS-06 5 134782587 134782587 C T C5orf20 Missense_Mutation p.G71E 0.20 tolerated_low_confidence(0.14) probably_damaging(0.969) TCGA-QB-A6FS-06 5 136476275 136476275 A G SPOCK1 Missense_Mutation p.L114P 0.25 tolerated(0.21) benign(0.001) TCGA-QB-A6FS-06 5 13762831 13762831 C T DNAH5 Silent p.K3427K 0.32 TCGA-QB-A6FS-06 5 13793828 13793828 C T DNAH5 Missense_Mutation p.E2674K 0.11 possibly_damaging(0.621) TCGA-QB-A6FS-06 5 13867922 13867922 G A DNAH5 Silent p.F1338F 0.20 TCGA-QB-A6FS-06 5 13944521 13944521 G A DNAH5 Silent p.L9L 0.29 TCGA-QB-A6FS-06 5 140058709 140058709 G A HARS Missense_Mutation p.P134S 0.19 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 5 140187123 140187123 C T PCDHA4 Silent p.F117F 0.20 TCGA-QB-A6FS-06 5 140203619 140203619 G A PCDHA5 Silent p.R753R 0.16 TCGA-QB-A6FS-06 5 140208432 140208432 C T PCDHA6 Silent p.F252F 0.20 TCGA-QB-A6FS-06 5 140249970 140249970 G A PCDHA11 Missense_Mutation p.D428N 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-QB-A6FS-06 5 140255890 140255890 C T PCDHA12 Missense_Mutation p.S278F 0.22 tolerated_low_confidence(0.42) benign(0.04) TCGA-QB-A6FS-06 5 140256039 140256039 C T PCDHA12 Missense_Mutation p.P328S 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.532) TCGA-QB-A6FS-06 5 140256633 140256633 G A PCDHA12 Missense_Mutation p.E526K 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QB-A6FS-06 5 140348413 140348413 C T PCDHAC2 Missense_Mutation p.L688F 0.17 tolerated(0.11) benign(0.174) TCGA-QB-A6FS-06 5 140476188 140476188 C T PCDHB2 Missense_Mutation p.S605L 0.17 deleterious(0) probably_damaging(0.966) TCGA-QB-A6FS-06 5 140502505 140502505 G A PCDHB4 Missense_Mutation p.E309K 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-QB-A6FS-06 5 140530097 140530097 G A PCDHB6 Missense_Mutation p.E87K 0.22 deleterious(0.03) benign(0.35) TCGA-QB-A6FS-06 5 140559230 140559230 T A PCDHB8 Missense_Mutation p.S539T 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-QB-A6FS-06 5 140559231 140559231 C A PCDHB8 Missense_Mutation p.S539Y 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.854) TCGA-QB-A6FS-06 5 140559336 140559336 C T PCDHB8 Missense_Mutation p.T574I 0.04 deleterious_low_confidence(0.01) benign(0.056) TCGA-QB-A6FS-06 5 140580620 140580620 G A PCDHB11 Missense_Mutation p.D425N 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-QB-A6FS-06 5 140593745 140593745 C T PCDHB13 Missense_Mutation p.S17F 0.13 tolerated_low_confidence(0.62) benign(0.001) TCGA-QB-A6FS-06 5 140603982 140603982 A G PCDHB14 Missense_Mutation p.N302S 0.16 tolerated_low_confidence(0.12) benign(0.102) TCGA-QB-A6FS-06 5 140616485 140616485 T G PCDHB18 RNA 0.21 TCGA-QB-A6FS-06 5 140625327 140625327 G A PCDHB15 Missense_Mutation p.E61K 0.23 tolerated_low_confidence(0.07) benign(0) TCGA-QB-A6FS-06 5 140740411 140740411 G A PCDHGB2 Missense_Mutation p.D237N 0.22 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 5 140784663 140784663 G A PCDHGA9 Missense_Mutation p.R715K 0.31 tolerated_low_confidence(0.17) benign(0.118) TCGA-QB-A6FS-06 5 14363864 14363864 G A TRIO Nonsense_Mutation p.W805* 0.22 TCGA-QB-A6FS-06 5 14681702 14681702 C T FAM105B Missense_Mutation p.P152S 0.16 tolerated(0.4) benign(0.037) TCGA-QB-A6FS-06 5 14681703 14681703 C T FAM105B Missense_Mutation p.P152L 0.16 tolerated(0.12) benign(0.013) TCGA-QB-A6FS-06 5 147040868 147040868 C T JAKMIP2 Silent p.E90E 0.20 TCGA-QB-A6FS-06 5 147051386 147051386 G A JAKMIP2 5'UTR 0.27 TCGA-QB-A6FS-06 5 147889195 147889195 G A HTR4 Silent p.L300L 0.09 TCGA-QB-A6FS-06 5 14871551 14871551 C T ANKH Silent p.V2V 0.23 TCGA-QB-A6FS-06 5 149497220 149497220 G A PDGFRB Missense_Mutation p.A1033V 0.21 tolerated(0.27) benign(0.002) TCGA-QB-A6FS-06 5 149784693 149784693 C T CD74 Silent p.E164E 0.39 TCGA-QB-A6FS-06 5 150722484 150722484 G A SLC36A2 Silent p.P135P 0.19 TCGA-QB-A6FS-06 5 151784272 151784272 G A NMUR2 Missense_Mutation p.L135F 0.26 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 5 156381462 156381462 C T TIMD4 Missense_Mutation p.D122N 0.28 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 5 156589430 156589430 C T FAM71B 3'UTR 0.19 TCGA-QB-A6FS-06 5 161113261 161113261 G A GABRA6 Missense_Mutation p.E22K 0.29 tolerated_low_confidence(1) benign(0) TCGA-QB-A6FS-06 5 167552026 167552026 C T TENM2 Missense_Mutation p.P727L 0.28 deleterious(0.04) benign(0.41) TCGA-QB-A6FS-06 5 168096932 168096932 C T SLIT3 Missense_Mutation p.G1398R 0.13 tolerated(0.49) benign(0.003) TCGA-QB-A6FS-06 5 168180967 168180967 G A SLIT3 Silent p.F577F 0.32 TCGA-QB-A6FS-06 5 170232728 170232728 G A GABRP Missense_Mutation p.D184N 0.19 tolerated(0.58) probably_damaging(0.966) TCGA-QB-A6FS-06 5 17354545 17354545 G A CTD-2139B15.2 RNA 0.38 TCGA-QB-A6FS-06 5 176004541 176004541 G A CDHR2 Missense_Mutation p.A446T 0.28 tolerated(0.19) benign(0.004) TCGA-QB-A6FS-06 5 177690242 177690242 C T COL23A1 Silent p.G202G 0.19 TCGA-QB-A6FS-06 5 178199438 178199438 C T AACSP1 RNA 0.33 TCGA-QB-A6FS-06 5 178413359 178413359 G A GRM6 Silent p.F632F 0.29 TCGA-QB-A6FS-06 5 180166250 180166250 C T OR2Y1 Missense_Mutation p.G270E 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-QB-A6FS-06 5 180374516 180374516 C T BTNL8 Silent p.T226T 0.22 TCGA-QB-A6FS-06 5 19483477 19483477 G A CDH18 Silent p.F605F 0.25 TCGA-QB-A6FS-06 5 21783578 21783578 C T CDH12 Missense_Mutation p.G428R 0.19 tolerated(0.3) benign(0.01) TCGA-QB-A6FS-06 5 24491904 24491904 C T CDH10 Missense_Mutation p.G553R 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-QB-A6FS-06 5 2748963 2748963 G A IRX2 Missense_Mutation p.P287S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-QB-A6FS-06 5 32077661 32077661 A C PDZD2 Missense_Mutation p.T1211P 0.11 tolerated(0.17) benign(0.012) TCGA-QB-A6FS-06 5 32712384 32712384 G A NPR3 Missense_Mutation p.D168N 0.24 tolerated(0.68) benign(0.002) TCGA-QB-A6FS-06 5 35691312 35691312 G A SPEF2 Silent p.G566G 0.24 TCGA-QB-A6FS-06 5 35876471 35876471 C T IL7R Silent p.L421L 0.28 TCGA-QB-A6FS-06 5 35957389 35957389 C T UGT3A1 Missense_Mutation p.G326R 0.17 tolerated(0.2) probably_damaging(1) TCGA-QB-A6FS-06 5 38530690 38530690 C T LIFR Missense_Mutation p.M20I 0.18 deleterious_low_confidence(0.04) benign(0.02) TCGA-QB-A6FS-06 5 38955747 38955747 A G RICTOR Silent p.T853T 0.16 TCGA-QB-A6FS-06 5 40692317 40692317 G A PTGER4 Missense_Mutation p.R435Q 0.13 tolerated_low_confidence(0.41) benign(0.033) TCGA-QB-A6FS-06 5 41033174 41033174 G A MROH2B Missense_Mutation p.S777F 0.17 deleterious(0) benign(0.287) TCGA-QB-A6FS-06 5 42718841 42718841 T C GHR Missense_Mutation p.V411A 0.24 tolerated(0.23) benign(0.326) TCGA-QB-A6FS-06 5 42719114 42719114 C T GHR Missense_Mutation p.S502F 0.20 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 5 43628323 43628323 C T NNT Silent p.F266F 0.21 TCGA-QB-A6FS-06 5 484802 484802 G A SLC9A3 Silent p.F255F 0.23 TCGA-QB-A6FS-06 5 55212937 55212937 G A IL31RA Missense_Mutation p.G762R 0.23 tolerated(0.96) benign(0.004) TCGA-QB-A6FS-06 5 61659093 61659093 A G KIF2A Missense_Mutation p.E403G 0.15 tolerated(0.31) possibly_damaging(0.543) TCGA-QB-A6FS-06 5 64748646 64748646 C T ADAMTS6 Missense_Mutation p.R244K 0.22 deleterious(0.01) possibly_damaging(0.887) TCGA-QB-A6FS-06 5 68505635 68505635 C T CENPH 3'UTR 0.24 TCGA-QB-A6FS-06 5 68902973 68902973 C T RP11-848G14.2 RNA 0.09 TCGA-QB-A6FS-06 5 72364489 72364489 A T FCHO2 Missense_Mutation p.S488C 0.25 deleterious(0.04) probably_damaging(0.935) TCGA-QB-A6FS-06 5 76128663 76128663 C T F2RL1 Silent p.F77F 0.22 TCGA-QB-A6FS-06 5 77335072 77335072 C T AP3B1 Silent p.T868T 0.25 TCGA-QB-A6FS-06 5 78742950 78742950 C T HOMER1 Missense_Mutation p.E105K 0.18 deleterious(0) probably_damaging(0.97) TCGA-QB-A6FS-06 5 79355727 79355727 A G THBS4 Missense_Mutation p.E329G 0.27 deleterious(0) probably_damaging(0.938) TCGA-QB-A6FS-06 5 80388749 80388749 G A RASGRF2 Missense_Mutation p.R507K 0.23 deleterious(0.01) benign(0.217) TCGA-QB-A6FS-06 5 82817297 82817297 G A VCAN Missense_Mutation p.E1058K 0.19 deleterious(0.03) benign(0.427) TCGA-QB-A6FS-06 5 89971984 89971984 G A GPR98 Missense_Mutation p.E1801K 0.21 probably_damaging(0.973) TCGA-QB-A6FS-06 5 90103462 90103462 C T GPR98 Silent p.F4960F 0.29 TCGA-QB-A6FS-06 5 94224666 94224666 C T MCTP1 Silent p.R617R 0.24 TCGA-QB-A6FS-06 6 100390825 100390825 C T MCHR2 Nonsense_Mutation p.W196* 0.21 TCGA-QB-A6FS-06 6 110146467 110146467 G A FIG4 Silent p.%3D 0.22 TCGA-QB-A6FS-06 6 117245849 117245849 C T RFX6 Nonsense_Mutation p.R525* 0.29 TCGA-QB-A6FS-06 6 117609888 117609888 C G ROS1 Missense_Mutation p.G2271R 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-QB-A6FS-06 6 12163816 12163816 A T HIVEP1 Missense_Mutation p.T2427S 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-QB-A6FS-06 6 12163817 12163817 C T HIVEP1 Missense_Mutation p.T2427M 0.39 deleterious(0) probably_damaging(0.981) TCGA-QB-A6FS-06 6 127767577 127767577 T C KIAA0408 Silent p.G629G 0.27 TCGA-QB-A6FS-06 6 127771326 127771326 T G KIAA0408 Missense_Mutation p.K103Q 0.34 tolerated(0.06) benign(0.35) TCGA-QB-A6FS-06 6 128134093 128134093 C T THEMIS Missense_Mutation p.E565K 0.26 tolerated(0.15) benign(0.009) TCGA-QB-A6FS-06 6 128150694 128150694 C T THEMIS Silent p.T212T 0.19 TCGA-QB-A6FS-06 6 136593187 136593187 C T BCLAF1 Silent p.R663R 0.08 TCGA-QB-A6FS-06 6 138645190 138645190 G A KIAA1244 Missense_Mutation p.E1634K 0.32 deleterious(0.01) benign(0.118) TCGA-QB-A6FS-06 6 144750811 144750811 C T UTRN Silent p.I263I 0.35 TCGA-QB-A6FS-06 6 159653852 159653852 C T FNDC1 Missense_Mutation p.H770Y 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-QB-A6FS-06 6 160662618 160662618 C T SLC22A2 Silent p.R463R 0.27 TCGA-QB-A6FS-06 6 160679555 160679555 C T SLC22A2 Missense_Mutation p.G79R 0.31 tolerated(0.07) probably_damaging(0.983) TCGA-QB-A6FS-06 6 161010736 161010736 C T LPA Missense_Mutation p.E1266K 0.31 deleterious(0.04) possibly_damaging(0.907) TCGA-QB-A6FS-06 6 16327798 16327798 G A ATXN1 Silent p.V248V 0.65 TCGA-QB-A6FS-06 6 167591975 167591975 C T TCP10L2 Missense_Mutation p.P201L 0.09 deleterious(0) possibly_damaging(0.796) TCGA-QB-A6FS-06 6 167704927 167704927 G A UNC93A 5'UTR 0.31 TCGA-QB-A6FS-06 6 169623541 169623541 C T THBS2 Missense_Mutation p.D935N 0.27 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 6 18208424 18208424 A G KDM1B Missense_Mutation p.Y386C 0.15 deleterious(0.04) unknown(0) TCGA-QB-A6FS-06 6 24502822 24502822 C T ALDH5A1 Silent p.I142I 0.10 TCGA-QB-A6FS-06 6 24551732 24551732 C T KIAA0319 Silent p.R990R 0.26 TCGA-QB-A6FS-06 6 26409900 26409900 G A BTN3A1 Silent p.K285K 0.15 TCGA-QB-A6FS-06 6 2893683 2893683 C T SERPINB9 Missense_Mutation p.E177K 0.14 tolerated(1) benign(0.003) TCGA-QB-A6FS-06 6 29141331 29141331 C T OR2J2 5'UTR 0.16 TCGA-QB-A6FS-06 6 29231741 29231741 C T XXbac-BPG308J9.3 RNA 0.33 TCGA-QB-A6FS-06 6 31431753 31431753 C T HCP5 RNA 0.30 TCGA-QB-A6FS-06 6 31540580 31540580 C T LTA Missense_Mutation p.L21F 0.16 deleterious(0.04) possibly_damaging(0.726) TCGA-QB-A6FS-06 6 31602309 31602309 C T PRRC2A Missense_Mutation p.P1637L 0.31 unknown(0) TCGA-QB-A6FS-06 6 31624326 31624326 C T APOM Silent p.D64D 0.13 TCGA-QB-A6FS-06 6 31624327 31624327 C T APOM Missense_Mutation p.P65S 0.14 tolerated(0.45) benign(0.013) TCGA-QB-A6FS-06 6 31846787 31846787 G A SLC44A4 5'Flank 0.37 TCGA-QB-A6FS-06 6 31918096 31918096 G A CFB Missense_Mutation p.A1016T 0.46 tolerated(0.22) benign(0.056) TCGA-QB-A6FS-06 6 31962437 31962437 T G C4A Missense_Mutation p.F919V 0.05 tolerated(0.31) benign(0.001) TCGA-QB-A6FS-06 6 31996603 31996603 C T C4B Missense_Mutation p.P1122S 0.24 deleterious(0.04) probably_damaging(0.967) TCGA-QB-A6FS-06 6 32041498 32041498 C T RNA5SP206 3'Flank 0.25 TCGA-QB-A6FS-06 6 32064385 32064385 C G TNXB Missense_Mutation p.E415D 0.50 probably_damaging(0.953) TCGA-QB-A6FS-06 6 32609190 32609190 G A HLA-DQA1 Silent p.L62L 0.33 TCGA-QB-A6FS-06 6 32798422 32798422 G A TAP2 Silent p.P478P 0.08 TCGA-QB-A6FS-06 6 33053608 33053608 C T HLA-DPB1 Silent p.F233F 0.14 TCGA-QB-A6FS-06 6 33281859 33281859 C T TAPBP 5'UTR 0.39 TCGA-QB-A6FS-06 6 36182056 36182056 C G BRPF3 Missense_Mutation p.A961G 0.14 tolerated(0.37) benign(0.021) TCGA-QB-A6FS-06 6 38877373 38877373 G A DNAH8 Nonsense_Mutation p.W2981* 0.19 TCGA-QB-A6FS-06 6 39053697 39053697 C T GLP1R Missense_Mutation p.R414W 0.16 tolerated(0.12) benign(0.027) TCGA-QB-A6FS-06 6 41740650 41740650 G A FRS3 Missense_Mutation p.L101F 0.24 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 6 57006231 57006231 C T ZNF451 Silent p.F278F 0.40 TCGA-QB-A6FS-06 6 62604624 62604624 G A KHDRBS2 Silent p.V242V 0.38 TCGA-QB-A6FS-06 6 73951787 73951787 G A KHDC1 Missense_Mutation p.H169Y 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-QB-A6FS-06 6 75799830 75799830 T C COL12A1 Silent p.E2979E 0.25 TCGA-QB-A6FS-06 6 85457714 85457714 G A TBX18 Missense_Mutation p.P288L 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-QB-A6FS-06 6 97247344 97247344 C T GPR63 Missense_Mutation p.M88I 0.31 tolerated(0.11) benign(0.056) TCGA-QB-A6FS-06 7 100086436 100086436 G A NYAP1 Silent p.K364K 0.29 TCGA-QB-A6FS-06 7 100198206 100198206 T C FBXO24 Missense_Mutation p.I514T 0.19 deleterious_low_confidence(0) benign(0.003) TCGA-QB-A6FS-06 7 100210471 100210471 G A MOSPD3 Silent p.R19R 0.48 TCGA-QB-A6FS-06 7 100350348 100350348 C T ZAN Missense_Mutation p.P874S 0.43 unknown(0) TCGA-QB-A6FS-06 7 100684355 100684355 G A MUC17 Missense_Mutation p.G3220R 0.18 probably_damaging(0.987) TCGA-QB-A6FS-06 7 100839079 100839079 C T MOGAT3 3'UTR 0.26 TCGA-QB-A6FS-06 7 101891702 101891702 C T CUX1 Missense_Mutation p.R1311C 0.44 deleterious(0) unknown(0) TCGA-QB-A6FS-06 7 101924127 101924127 C T SH2B2 5'Flank 0.20 TCGA-QB-A6FS-06 7 102738898 102738898 C T ARMC10 Silent p.F310F 0.13 TCGA-QB-A6FS-06 7 103290785 103290785 C T RELN Silent p.R646R 0.09 TCGA-QB-A6FS-06 7 107720054 107720054 C T LAMB4 Missense_Mutation p.E627K 0.36 deleterious(0) possibly_damaging(0.495) TCGA-QB-A6FS-06 7 1097134 1097134 G A GPR146 5'UTR 0.11 TCGA-QB-A6FS-06 7 1097135 1097135 G A GPR146 5'UTR 0.11 TCGA-QB-A6FS-06 7 11468727 11468727 G A THSD7A Silent p.I1030I 0.35 TCGA-QB-A6FS-06 7 120979028 120979028 G A WNT16 Missense_Mutation p.E243K 0.14 tolerated(0.29) benign(0.038) TCGA-QB-A6FS-06 7 121942231 121942231 C T FEZF1 Silent p.K416K 0.17 TCGA-QB-A6FS-06 7 122635335 122635335 C T TAS2R16 Silent p.L118L 0.13 TCGA-QB-A6FS-06 7 124386813 124386813 G A GPR37 Silent p.F536F 0.13 TCGA-QB-A6FS-06 7 127892068 127892068 G A LEP 5'UTR 0.10 TCGA-QB-A6FS-06 7 128496964 128496964 G A FLNC Missense_Mutation p.G2517E 0.12 tolerated(0.32) possibly_damaging(0.85) TCGA-QB-A6FS-06 7 129946681 129946681 G A CPA4 Missense_Mutation p.D216N 0.05 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 7 130008514 130008514 C T CPA5 3'UTR 0.14 TCGA-QB-A6FS-06 7 130021485 130021485 G A CPA1 Silent p.R54R 0.13 TCGA-QB-A6FS-06 7 130025044 130025044 C T CPA1 Missense_Mutation p.S282F 0.18 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 7 131866214 131866214 G A PLXNA4 Missense_Mutation p.P1140S 0.11 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 7 137028391 137028391 G A PTN 5'UTR 0.46 TCGA-QB-A6FS-06 7 138305846 138305846 C T SVOPL Missense_Mutation p.G433E 0.14 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 7 138863333 138863333 G A TTC26 Missense_Mutation p.E411K 0.13 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 7 140285410 140285410 G A DENND2A Silent p.S408S 0.13 TCGA-QB-A6FS-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.56 deleterious(0) probably_damaging(0.967) TCGA-QB-A6FS-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.56 deleterious(0) possibly_damaging(0.838) TCGA-QB-A6FS-06 7 141708471 141708471 G A MGAM Missense_Mutation p.R98Q 0.53 deleterious(0.01) probably_damaging(0.919) TCGA-QB-A6FS-06 7 142120278 142120278 C T TRBV7-7 Missense_Mutation p.G15E 0.37 tolerated(0.13) benign(0.078) TCGA-QB-A6FS-06 7 142168930 142168930 C T TRBV5-4 5'UTR 0.36 TCGA-QB-A6FS-06 7 142198021 142198021 G A TRBV11-2 RNA 0.10 TCGA-QB-A6FS-06 7 142428785 142428785 G A TRBV28 Missense_Mutation p.E49K 0.47 deleterious(0.01) benign(0.424) TCGA-QB-A6FS-06 7 142563804 142563804 C T EPHB6 Nonsense_Mutation p.R398* 0.26 TCGA-QB-A6FS-06 7 142636792 142636792 C T C7orf34 Missense_Mutation p.P50L 0.11 tolerated_low_confidence(0.05) probably_damaging(0.958) TCGA-QB-A6FS-06 7 142880781 142880781 G A TAS2R39 Missense_Mutation p.M90I 0.17 tolerated(0.3) benign(0.034) TCGA-QB-A6FS-06 7 142881158 142881158 G A TAS2R39 Missense_Mutation p.G216E 0.34 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 7 142881159 142881159 G A TAS2R39 Silent p.G216G 0.34 TCGA-QB-A6FS-06 7 143036677 143036677 C T CLCN1 Silent p.I515I 0.30 TCGA-QB-A6FS-06 7 143632472 143632472 C T OR2F2 Silent p.I49I 0.13 TCGA-QB-A6FS-06 7 143807593 143807593 G A OR2A2 Silent p.R306R 0.10 TCGA-QB-A6FS-06 7 143956672 143956672 G A OR2A7 Missense_Mutation p.P17L 0.18 tolerated(0.63) benign(0.049) TCGA-QB-A6FS-06 7 149520464 149520464 G A SSPO RNA 0.10 TCGA-QB-A6FS-06 7 149528223 149528223 G A SSPO Splice_Site 0.42 TCGA-QB-A6FS-06 7 150217651 150217651 G A GIMAP7 Missense_Mutation p.E197K 0.57 tolerated(0.24) benign(0.009) TCGA-QB-A6FS-06 7 150269244 150269244 C T GIMAP4 Missense_Mutation p.S29F 0.13 deleterious(0) benign(0.159) TCGA-QB-A6FS-06 7 150389858 150389858 G A GIMAP2 Missense_Mutation p.D162N 0.55 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 7 150501930 150501930 G A TMEM176A Missense_Mutation p.E228K 0.36 tolerated(1) benign(0.001) TCGA-QB-A6FS-06 7 150554639 150554639 G A AOC1 Missense_Mutation p.G361R 0.25 deleterious(0) probably_damaging(0.998) TCGA-QB-A6FS-06 7 150878096 150878096 C T ASB10 Missense_Mutation p.S345N 0.10 tolerated(0.41) benign(0.039) TCGA-QB-A6FS-06 7 1513981 1513981 G A INTS1 Silent p.I1884I 0.33 TCGA-QB-A6FS-06 7 151876967 151876967 G A KMT2C Missense_Mutation p.P2465L 0.12 possibly_damaging(0.604) TCGA-QB-A6FS-06 7 155093324 155093324 C T INSIG1 Missense_Mutation p.P154L 0.09 deleterious(0.03) probably_damaging(1) TCGA-QB-A6FS-06 7 155093325 155093325 C T INSIG1 Silent p.P154P 0.11 TCGA-QB-A6FS-06 7 20668389 20668389 C T ABCB5 Missense_Mutation p.P63S 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-QB-A6FS-06 7 21932218 21932218 C T DNAH11 Missense_Mutation p.T4235I 0.38 benign(0.037) TCGA-QB-A6FS-06 7 21945200 21945200 G A CDCA7L Missense_Mutation p.P324L 0.31 deleterious(0) benign(0.356) TCGA-QB-A6FS-06 7 2302895 2302895 G A SNX8 Silent p.F295F 0.39 TCGA-QB-A6FS-06 7 23825111 23825111 C T STK31 Silent p.L721L 0.23 TCGA-QB-A6FS-06 7 24902892 24902892 G A OSBPL3 Missense_Mutation p.P266L 0.40 deleterious(0.03) possibly_damaging(0.87) TCGA-QB-A6FS-06 7 28857793 28857793 C T CREB5 Silent p.L454L 0.37 TCGA-QB-A6FS-06 7 30118271 30118271 C T PLEKHA8 Silent p.D476D 0.26 TCGA-QB-A6FS-06 7 30197178 30197178 C T MTURN 3'UTR 0.21 TCGA-QB-A6FS-06 7 30494901 30494901 C A NOD1 Missense_Mutation p.Q76H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-QB-A6FS-06 7 30721579 30721579 C T CRHR2 Missense_Mutation p.E88K 0.24 tolerated(0.37) benign(0.423) TCGA-QB-A6FS-06 7 30795099 30795099 G A INMT Missense_Mutation p.D142N 0.28 deleterious(0.02) benign(0.407) TCGA-QB-A6FS-06 7 30922585 30922585 C T FAM188B Silent p.P734P 0.33 TCGA-QB-A6FS-06 7 32910037 32910037 A C KBTBD2 Silent p.T264T 0.45 TCGA-QB-A6FS-06 7 34192733 34192733 G A BMPER Missense_Mutation p.D636N 0.22 deleterious(0.05) possibly_damaging(0.824) TCGA-QB-A6FS-06 7 34698133 34698133 G A NPSR1 Missense_Mutation p.E37K 0.36 tolerated(0.09) possibly_damaging(0.477) TCGA-QB-A6FS-06 7 36366506 36366506 G A KIAA0895 Missense_Mutation p.R476C 0.20 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 7 39472691 39472691 C T POU6F2 Missense_Mutation p.P348S 0.32 deleterious(0) unknown(0) TCGA-QB-A6FS-06 7 42977238 42977238 C T MRPL32 3'UTR 0.30 TCGA-QB-A6FS-06 7 44573117 44573117 C T NPC1L1 Silent p.L774L 0.31 TCGA-QB-A6FS-06 7 45701664 45701664 C T ADCY1 Missense_Mutation p.P486S 0.31 tolerated(0.17) benign(0.271) TCGA-QB-A6FS-06 7 45717486 45717486 G A ADCY1 Missense_Mutation p.A542T 0.14 tolerated(0.08) benign(0.016) TCGA-QB-A6FS-06 7 45930313 45930313 G A IGFBP1 Nonsense_Mutation p.W172* 0.18 TCGA-QB-A6FS-06 7 47835655 47835655 C T PKD1L1 Missense_Mutation p.E2763K 0.12 tolerated(1) benign(0.008) TCGA-QB-A6FS-06 7 47897422 47897422 G A PKD1L1 Silent p.L1457L 0.31 TCGA-QB-A6FS-06 7 4949592 4949592 G A MMD2 Missense_Mutation p.L177F 0.16 tolerated_low_confidence(0.18) benign(0.001) TCGA-QB-A6FS-06 7 50596939 50596939 G A DDC Silent p.I179I 0.38 TCGA-QB-A6FS-06 7 51096504 51096504 G A COBL Silent p.P763P 0.43 TCGA-QB-A6FS-06 7 53103403 53103403 G A POM121L12 Silent p.G13G 0.52 TCGA-QB-A6FS-06 7 53103681 53103681 C T POM121L12 Missense_Mutation p.T106I 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-QB-A6FS-06 7 53103927 53103927 G A POM121L12 Missense_Mutation p.G188E 0.19 deleterious(0.03) probably_damaging(0.988) TCGA-QB-A6FS-06 7 55221763 55221763 C T EGFR Silent p.L269L 0.23 TCGA-QB-A6FS-06 7 55560102 55560102 C T VOPP1 Silent p.L67L 0.38 TCGA-QB-A6FS-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.15 TCGA-QB-A6FS-06 7 6426893 6426893 C T RAC1 Missense_Mutation p.P29L 0.39 deleterious(0.02) possibly_damaging(0.839) TCGA-QB-A6FS-06 7 70255216 70255216 C T AUTS2 Missense_Mutation p.P1005L 0.19 tolerated(0.13) benign(0.241) TCGA-QB-A6FS-06 7 72985153 72985153 G A TBL2 Missense_Mutation p.A343V 0.14 deleterious(0.01) benign(0.394) TCGA-QB-A6FS-06 7 73461026 73461026 G A ELN Missense_Mutation p.G191E 0.14 unknown(0) TCGA-QB-A6FS-06 7 75513071 75513071 C T RHBDD2 Silent p.L214L 0.41 TCGA-QB-A6FS-06 7 75583414 75583414 C T POR Missense_Mutation p.S35L 0.17 tolerated(0.42) benign(0.102) TCGA-QB-A6FS-06 7 76828971 76828971 C T FGL2 Missense_Mutation p.G47E 0.42 tolerated(0.25) benign(0.035) TCGA-QB-A6FS-06 7 77885269 77885269 G A MAGI2 Missense_Mutation p.H680Y 0.58 deleterious(0.02) benign(0.34) TCGA-QB-A6FS-06 7 81611886 81611886 G A CACNA2D1 Missense_Mutation p.P651L 0.12 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 7 82579028 82579028 G A PCLO Missense_Mutation p.P3626S 0.33 unknown(0) TCGA-QB-A6FS-06 7 82785203 82785203 G A PCLO Missense_Mutation p.P252S 0.15 unknown(0) TCGA-QB-A6FS-06 7 87051439 87051439 G A ABCB4 Nonsense_Mutation p.Q772* 0.46 TCGA-QB-A6FS-06 7 893141 893141 C T SUN1 Silent p.L383L 0.42 TCGA-QB-A6FS-06 7 93055567 93055567 G A CALCR 3'UTR 0.24 TCGA-QB-A6FS-06 7 94041910 94041910 C T COL1A2 Silent p.I473I 0.30 TCGA-QB-A6FS-06 7 95167003 95167003 C T ASB4 Missense_Mutation p.P405S 0.27 deleterious(0.01) possibly_damaging(0.701) TCGA-QB-A6FS-06 7 96650035 96650035 G T DLX5 3'UTR 0.32 TCGA-QB-A6FS-06 7 98507854 98507854 C T TRRAP Missense_Mutation p.P509L 0.47 benign(0) TCGA-QB-A6FS-06 7 99434119 99434119 C T CYP3A43 Missense_Mutation p.P39S 0.11 tolerated(0.06) possibly_damaging(0.602) TCGA-QB-A6FS-06 7 99489756 99489756 G A TRIM4 3'UTR 0.31 TCGA-QB-A6FS-06 7 99817587 99817587 G A PVRIG Silent p.E18E 0.33 TCGA-QB-A6FS-06 7 99817763 99817763 C T PVRIG Missense_Mutation p.R49W 0.30 deleterious(0) benign(0.231) TCGA-QB-A6FS-06 8 103317392 103317392 A C UBR5 Missense_Mutation p.C916W 0.16 deleterious(0.02) probably_damaging(0.987) TCGA-QB-A6FS-06 8 10470146 10470146 G A RP1L1 Nonsense_Mutation p.Q488* 0.39 TCGA-QB-A6FS-06 8 110478892 110478892 C T PKHD1L1 Silent p.F2833F 0.39 TCGA-QB-A6FS-06 8 110505951 110505951 G A PKHD1L1 Missense_Mutation p.G3433E 0.26 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 8 11281877 11281877 G A FAM167A 3'UTR 0.29 TCGA-QB-A6FS-06 8 113988200 113988200 T A CSMD3 Missense_Mutation p.N403I 0.40 tolerated_low_confidence(0.42) benign(0) TCGA-QB-A6FS-06 8 114031317 114031317 C T CSMD3 Missense_Mutation p.G337R 0.27 deleterious(0) probably_damaging(0.976) TCGA-QB-A6FS-06 8 114031325 114031325 C T CSMD3 Missense_Mutation p.R334Q 0.19 deleterious(0.04) possibly_damaging(0.906) TCGA-QB-A6FS-06 8 118159251 118159251 G A SLC30A8 Missense_Mutation p.E44K 0.24 tolerated(0.12) benign(0.005) TCGA-QB-A6FS-06 8 121383489 121383489 G A COL14A1 3'UTR 0.15 TCGA-QB-A6FS-06 8 125551344 125551344 C T TATDN1 5'Flank 0.22 TCGA-QB-A6FS-06 8 133182591 133182591 G A KCNQ3 Missense_Mutation p.P409S 0.24 tolerated(0.11) benign(0.309) TCGA-QB-A6FS-06 8 134128854 134128854 G A TG Missense_Mutation p.D2586N 0.10 deleterious(0) probably_damaging(0.989) TCGA-QB-A6FS-06 8 139209810 139209810 G A FAM135B Missense_Mutation p.H258Y 0.30 tolerated(1) benign(0) TCGA-QB-A6FS-06 8 13959930 13959930 C T SGCZ Silent p.K233K 0.38 TCGA-QB-A6FS-06 8 139696702 139696702 C T COL22A1 Missense_Mutation p.G993E 0.33 unknown(0) TCGA-QB-A6FS-06 8 139763744 139763744 C T COL22A1 Missense_Mutation p.G681D 0.25 unknown(0) TCGA-QB-A6FS-06 8 144239833 144239833 G A LY6H Missense_Mutation p.S107L 0.29 deleterious(0.02) benign(0.233) TCGA-QB-A6FS-06 8 144994645 144994645 G A PLEC Missense_Mutation p.S3252F 0.23 probably_damaging(0.99) TCGA-QB-A6FS-06 8 145106164 145106166 AAC - SPATC1 3'Flank 0.25 TCGA-QB-A6FS-06 8 145235383 145235383 G A MROH1 Silent p.L173L 0.31 TCGA-QB-A6FS-06 8 145512977 145512977 G A BOP1 Silent p.L36L 0.29 TCGA-QB-A6FS-06 8 145620234 145620234 C T CPSF1 Missense_Mutation p.E1093K 0.35 tolerated(0.06) benign(0.223) TCGA-QB-A6FS-06 8 145641270 145641270 G A SLC39A4 Missense_Mutation p.P133L 0.26 deleterious(0.03) benign(0.316) TCGA-QB-A6FS-06 8 145649348 145649348 G A VPS28 Silent p.P208P 0.30 TCGA-QB-A6FS-06 8 146157628 146157628 G A ZNF16 Missense_Mutation p.P182L 0.32 tolerated(0.25) benign(0.001) TCGA-QB-A6FS-06 8 22472972 22472972 G A CCAR2 Missense_Mutation p.G414R 0.30 deleterious(0.01) probably_damaging(1) TCGA-QB-A6FS-06 8 25364920 25364920 C T CDCA2 Missense_Mutation p.P913L 0.28 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 8 27301771 27301771 C T PTK2B Missense_Mutation p.P733S 0.25 tolerated(0.08) benign(0.269) TCGA-QB-A6FS-06 8 2818684 2818684 C T CSMD1 Silent p.Q3227Q 0.40 TCGA-QB-A6FS-06 8 2876151 2876151 G A CSMD1 Missense_Mutation p.S2626F 0.27 possibly_damaging(0.718) TCGA-QB-A6FS-06 8 30701198 30701198 G A TEX15 Missense_Mutation p.S1779L 0.31 deleterious(0.01) benign(0.119) TCGA-QB-A6FS-06 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.24 probably_damaging(0.999) TCGA-QB-A6FS-06 8 38271320 38271320 C T FGFR1 Silent p.E796E 0.10 TCGA-QB-A6FS-06 8 41122983 41122983 C T SFRP1 Silent p.V216V 0.31 TCGA-QB-A6FS-06 8 48697704 48697704 C T PRKDC Missense_Mutation p.E3692K 0.21 benign(0.287) TCGA-QB-A6FS-06 8 52370060 52370060 G A PXDNL Missense_Mutation p.P327L 0.22 deleterious(0.02) benign(0.179) TCGA-QB-A6FS-06 8 52469455 52469455 C T PXDNL Missense_Mutation p.E109K 0.31 tolerated(0.07) possibly_damaging(0.745) TCGA-QB-A6FS-06 8 53028865 53028865 T C ST18 Silent p.S991S 0.29 TCGA-QB-A6FS-06 8 53044607 53044607 C T ST18 Nonsense_Mutation p.W859* 0.20 TCGA-QB-A6FS-06 8 53044608 53044608 C T ST18 Nonsense_Mutation p.W859* 0.21 TCGA-QB-A6FS-06 8 53073941 53073941 G A ST18 Missense_Mutation p.P530S 0.29 tolerated(0.39) benign(0.019) TCGA-QB-A6FS-06 8 54141766 54141766 C T OPRK1 3'UTR 0.24 TCGA-QB-A6FS-06 8 55540733 55540733 G A RP1 Missense_Mutation p.E1431K 0.07 tolerated(1) benign(0) TCGA-QB-A6FS-06 8 56866538 56866538 G A LYN Nonsense_Mutation p.W262* 0.14 TCGA-QB-A6FS-06 8 57353893 57353893 C T PENK Missense_Mutation p.E248K 0.36 deleterious(0.01) benign(0.082) TCGA-QB-A6FS-06 8 62212823 62212823 C T CLVS1 Missense_Mutation p.A146V 0.31 tolerated(0.13) possibly_damaging(0.507) TCGA-QB-A6FS-06 8 62212824 62212824 C T CLVS1 Silent p.A146A 0.30 TCGA-QB-A6FS-06 8 62550915 62550915 A T ASPH Nonsense_Mutation p.Y266* 0.29 TCGA-QB-A6FS-06 8 63939747 63939747 G A GGH Missense_Mutation p.S118F 0.25 deleterious(0) probably_damaging(0.993) TCGA-QB-A6FS-06 8 65509424 65509424 C T CYP7B1 Silent p.G432G 0.30 TCGA-QB-A6FS-06 8 65537058 65537058 G A CYP7B1 Missense_Mutation p.P54L 0.28 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 8 68346316 68346316 G A CPA6 Missense_Mutation p.P333L 0.23 deleterious(0) probably_damaging(1) TCGA-QB-A6FS-06 8 69351691 69351691 C T C8orf34 Intron 0.28 TCGA-QB-A6FS-06 8 70517065 70517065 C T SULF1 Silent p.S425S 0.19 TCGA-QB-A6FS-06 8 70553043 70553043 G A SULF1 Missense_Mutation p.G851E 0.28 tolerated_low_confidence(0.13) benign(0.005) TCGA-QB-A6FS-06 8 73849624 73849624 C T KCNB2 Silent p.L678L 0.39 TCGA-QB-A6FS-06 8 79629650 79629650 C T ZC2HC1A Silent p.C300C 0.17 TCGA-QB-A6FS-06 8 95158206 95158206 G A CDH17 Missense_Mutation p.S706F 0.17 deleterious(0.02) benign(0.114) TCGA-QB-A6FS-06 8 95680314 95680314 G A ESRP1 Missense_Mutation p.E357K 0.21 deleterious(0.04) benign(0.295) TCGA-QB-A6FS-06 9 101168390 101168390 C T GABBR2 Missense_Mutation p.G424R 0.17 deleterious(0) probably_damaging(0.979) TCGA-QB-A6FS-06 9 101765776 101765776 C T COL15A1 Silent p.I369I 0.47 TCGA-QB-A6FS-06 9 105767475 105767475 G A CYLC2 Missense_Mutation p.D188N 0.43 tolerated(0.08) unknown(0) TCGA-QB-A6FS-06 9 113169320 113169320 C T SVEP1 Missense_Mutation p.E2854K 0.37 benign(0.013) TCGA-QB-A6FS-06 9 113170146 113170146 G A SVEP1 Silent p.I2578I 0.40 TCGA-QB-A6FS-06 9 113547963 113547963 C T MUSK Silent p.I581I 0.48 TCGA-QB-A6FS-06 9 114293157 114293157 C T ZNF483 Missense_Mutation p.P139S 0.44 tolerated(0.45) benign(0) TCGA-QB-A6FS-06 9 115812183 115812183 G A ZFP37 Intron 0.45 TCGA-QB-A6FS-06 9 116930426 116930426 C T COL27A1 Silent p.F197F 0.45 TCGA-QB-A6FS-06 9 117846693 117846693 G A TNC Silent p.A642A 0.43 TCGA-QB-A6FS-06 9 119106967 119106967 G A PAPPA Missense_Mutation p.D1253N 0.45 tolerated(0.12) possibly_damaging(0.539) TCGA-QB-A6FS-06 9 119129970 119129970 C T PAPPA Silent p.I1514I 0.24 TCGA-QB-A6FS-06 9 119903608 119903608 G A ASTN2 Intron 0.19 TCGA-QB-A6FS-06 9 123007254 123007254 C T MIR147A 3'Flank 0.51 TCGA-QB-A6FS-06 9 124971981 124971981 C T LHX6 Missense_Mutation p.G357E 0.25 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-QB-A6FS-06 9 125377328 125377328 C T OR1Q1 Silent p.F104F 0.41 TCGA-QB-A6FS-06 9 130210242 130210242 C T RPL12 Missense_Mutation p.A136T 0.24 deleterious(0.04) benign(0.045) TCGA-QB-A6FS-06 9 134073741 134073741 C T NUP214 Silent p.T1620T 0.40 TCGA-QB-A6FS-06 9 134354664 134354664 C T PRRC2B Missense_Mutation p.S1595F 0.52 deleterious(0) possibly_damaging(0.498) TCGA-QB-A6FS-06 9 135776203 135776203 G A TSC1 Nonsense_Mutation p.Q842* 0.13 TCGA-QB-A6FS-06 9 135776204 135776204 G A TSC1 Silent p.V841V 0.13 TCGA-QB-A6FS-06 9 137707455 137707455 C T COL5A1 Missense_Mutation p.P1350S 0.41 unknown(0) TCGA-QB-A6FS-06 9 139265103 139265103 C T CARD9 Silent p.V226V 0.21 TCGA-QB-A6FS-06 9 139371859 139371859 G A SEC16A Missense_Mutation p.S70L 0.20 tolerated(0.27) benign(0.024) TCGA-QB-A6FS-06 9 140084414 140084414 C T SSNA1 3'UTR 0.29 TCGA-QB-A6FS-06 9 140850162 140850162 G A CACNA1B Silent p.K361K 0.15 TCGA-QB-A6FS-06 9 14859208 14859208 G A FREM1 Nonsense_Mutation p.Q202* 0.43 TCGA-QB-A6FS-06 9 18622307 18622307 G A ADAMTSL1 Missense_Mutation p.D181N 0.30 deleterious(0.04) probably_damaging(0.91) TCGA-QB-A6FS-06 9 21216974 21216974 C T IFNA16 Missense_Mutation p.E111K 0.30 deleterious(0.01) possibly_damaging(0.451) TCGA-QB-A6FS-06 9 21239366 21239366 C T IFNA14 Silent p.%3D 0.26 TCGA-QB-A6FS-06 9 32430468 32430468 G A ACO1 Missense_Mutation p.R541Q 0.20 deleterious(0) probably_damaging(0.989) TCGA-QB-A6FS-06 9 35079160 35079160 G A FANCG Missense_Mutation p.H55Y 0.33 tolerated(0.59) benign(0.002) TCGA-QB-A6FS-06 9 35236569 35236569 C T UNC13B Missense_Mutation p.R86C 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.75) TCGA-QB-A6FS-06 9 35809809 35809809 T C SPAG8 Intron 0.52 TCGA-QB-A6FS-06 9 379850 379850 C T DOCK8 Silent p.D840D 0.20 TCGA-QB-A6FS-06 9 77354858 77354858 G A TRPM6 Silent p.S1756S 0.37 TCGA-QB-A6FS-06 9 79321255 79321255 C T PRUNE2 Missense_Mutation p.E1979K 0.43 tolerated(0.1) benign(0.02) TCGA-QB-A6FS-06 9 79322300 79322300 A G PRUNE2 Silent p.D1630D 0.45 TCGA-QB-A6FS-06 9 88248168 88248168 A G AGTPBP1 Missense_Mutation p.V435A 0.38 tolerated(0.57) benign(0.001) TCGA-QB-A6FS-06 9 88692332 88692332 C T GOLM1 Missense_Mutation p.E102K 0.32 deleterious(0.03) possibly_damaging(0.81) TCGA-QB-A6FS-06 9 90322045 90322045 C T DAPK1 Silent p.F1353F 0.46 TCGA-QB-A6FS-06 9 90343221 90343221 G A CTSL Silent p.K102K 0.16 TCGA-QB-A6FS-06 9 91686132 91686132 G A SHC3 Silent p.F255F 0.13 TCGA-QB-A6FS-06 9 93636963 93636963 G A SYK Missense_Mutation p.R338K 0.39 tolerated(0.3) benign(0.007) TCGA-QB-A6FS-06 X 101097863 101097863 G A NXF5 5'UTR 0.45 TCGA-QB-A6FS-06 X 101911622 101911622 C T GPRASP1 Silent p.S927S 0.33 TCGA-QB-A6FS-06 X 103268115 103268115 C T H2BFWT Missense_Mutation p.E40K 0.46 tolerated(0.07) benign(0.232) TCGA-QB-A6FS-06 X 105449691 105449691 C T MUM1L1 Missense_Mutation p.S89L 0.46 deleterious(0) possibly_damaging(0.616) TCGA-QB-A6FS-06 X 105450125 105450125 G A MUM1L1 Missense_Mutation p.E234K 0.35 tolerated(0.23) probably_damaging(0.998) TCGA-QB-A6FS-06 X 106064220 106064220 A G TBC1D8B Missense_Mutation p.I119V 0.43 tolerated(0.42) benign(0.017) TCGA-QB-A6FS-06 X 122387351 122387351 T A GRIA3 Missense_Mutation p.Y156N 0.48 deleterious(0) probably_damaging(0.973) TCGA-QB-A6FS-06 X 123504073 123504073 C T SH2D1A Silent p.L83L 0.40 TCGA-QB-A6FS-06 X 123838975 123838975 G A TENM1 Silent p.S301S 0.39 TCGA-QB-A6FS-06 X 127185215 127185215 T C ACTRT1 Missense_Mutation p.K324R 0.56 tolerated(0.31) possibly_damaging(0.874) TCGA-QB-A6FS-06 X 130413282 130413282 G T IGSF1 Silent p.V560V 0.35 TCGA-QB-A6FS-06 X 140926167 140926167 G A MAGEC3 Silent p.V22V 0.42 TCGA-QB-A6FS-06 X 140996029 140996029 C T MAGEC1 Missense_Mutation p.P947S 0.45 deleterious(0.02) unknown(0) TCGA-QB-A6FS-06 X 1424418 1424418 G A CSF2RA Missense_Mutation p.E409K 0.25 deleterious(0.01) benign(0.225) TCGA-QB-A6FS-06 X 142718345 142718345 G A SLITRK4 Missense_Mutation p.P194S 0.47 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 X 150348569 150348569 G A GPR50 Missense_Mutation p.D172N 0.43 deleterious(0.02) possibly_damaging(0.628) TCGA-QB-A6FS-06 X 151303507 151303507 G A MAGEA10 Missense_Mutation p.P196S 0.37 deleterious(0) probably_damaging(0.958) TCGA-QB-A6FS-06 X 152826144 152826144 C T ATP2B3 Silent p.F950F 0.44 TCGA-QB-A6FS-06 X 153594422 153594422 G A FLNA Missense_Mutation p.R467C 0.33 deleterious(0) probably_damaging(0.947) TCGA-QB-A6FS-06 X 153692617 153692617 C T PLXNA3 Missense_Mutation p.P597S 0.52 deleterious(0) possibly_damaging(0.89) TCGA-QB-A6FS-06 X 155231168 155231168 G A IL9R Intron 0.14 TCGA-QB-A6FS-06 X 16170822 16170822 G A GRPR 3'UTR 0.44 TCGA-QB-A6FS-06 X 17095492 17095492 C T REPS2 Missense_Mutation p.S493F 0.40 deleterious(0) probably_damaging(0.999) TCGA-QB-A6FS-06 X 17742434 17742434 G A NHS Missense_Mutation p.R354K 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-QB-A6FS-06 X 20134933 20134933 G A MAP7D2 Missense_Mutation p.S22F 0.57 tolerated_low_confidence(0.43) possibly_damaging(0.538) TCGA-QB-A6FS-06 X 24229438 24229438 C T ZFX Missense_Mutation p.P788L 0.50 tolerated(0.12) probably_damaging(0.998) TCGA-QB-A6FS-06 X 24665156 24665156 G A PCYT1B Missense_Mutation p.P23S 0.52 tolerated_low_confidence(0.25) benign(0.002) TCGA-QB-A6FS-06 X 2799122 2799122 C T GYG2 Silent p.I458I 0.40 TCGA-QB-A6FS-06 X 29973462 29973462 G A IL1RAPL1 Nonsense_Mutation p.W539* 0.28 TCGA-QB-A6FS-06 X 35985753 35985753 C G CXorf22 Missense_Mutation p.R540G 0.40 deleterious(0) benign(0.121) TCGA-QB-A6FS-06 X 43634451 43634451 G A MAOB Silent p.F402F 0.40 TCGA-QB-A6FS-06 X 49142438 49142438 C T PPP1R3F Missense_Mutation p.S429F 0.18 tolerated_low_confidence(0.13) benign(0.002) TCGA-QB-A6FS-06 X 50089776 50089776 C T CCNB3 Silent p.I1260I 0.62 TCGA-QB-A6FS-06 X 50094366 50094366 C T CCNB3 Missense_Mutation p.H1363Y 0.46 deleterious(0) probably_damaging(0.988) TCGA-QB-A6FS-06 X 65408298 65408298 C T HEPH Silent p.L295L 0.32 TCGA-QB-A6FS-06 X 65486366 65486366 C T HEPH Missense_Mutation p.S1164F 0.27 tolerated(0.05) benign(0.002) TCGA-QB-A6FS-06 X 69370141 69370141 A C IGBP1 Missense_Mutation p.L280F 0.29 tolerated(0.08) benign(0.208) TCGA-QB-A6FS-06 X 69370143 69370143 C T IGBP1 Missense_Mutation p.P281L 0.28 deleterious(0.01) possibly_damaging(0.507) TCGA-QB-A6FS-06 X 70147134 70147134 G A SLC7A3 Silent p.L428L 0.50 TCGA-QB-A6FS-06 X 70148084 70148084 C T SLC7A3 Missense_Mutation p.G244E 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-QB-A6FS-06 X 73063712 73063712 G A XIST RNA 0.50 TCGA-QB-AA9O-06 10 102016231 102016231 G A CWF19L1 Missense_Mutation p.R98C 0.10 deleterious(0) possibly_damaging(0.899) TCGA-QB-AA9O-06 10 103901458 103901458 C T PPRC1 Missense_Mutation p.H1065Y 0.10 deleterious_low_confidence(0.01) benign(0.002) TCGA-QB-AA9O-06 10 104174666 104174666 C T PSD Missense_Mutation p.E360K 0.55 tolerated(0.06) benign(0.031) TCGA-QB-AA9O-06 10 105923972 105923972 C T WDR96 Silent p.K1042K 0.41 TCGA-QB-AA9O-06 10 106074772 106074772 G A ITPRIP Silent p.F346F 0.59 TCGA-QB-AA9O-06 10 106152032 106152032 G A CCDC147 Silent p.Q469Q 0.58 TCGA-QB-AA9O-06 10 115422481 115422481 G A NRAP Missense_Mutation p.P71L 0.09 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 10 118394352 118394352 G A PNLIPRP2 Missense_Mutation p.G273E 0.46 tolerated(0.17) possibly_damaging(0.684) TCGA-QB-AA9O-06 10 122263398 122263398 C T PPAPDC1A Missense_Mutation p.P42L 0.09 deleterious(0) probably_damaging(0.991) TCGA-QB-AA9O-06 10 122640355 122640355 C T WDR11 Missense_Mutation p.R561C 0.56 deleterious(0) probably_damaging(0.985) TCGA-QB-AA9O-06 10 123256052 123256052 G A FGFR2 Silent p.S620S 0.12 TCGA-QB-AA9O-06 10 123845735 123845735 C T TACC2 Silent p.V1240V 0.08 TCGA-QB-AA9O-06 10 123987484 123987484 G A TACC2 Silent p.E2619E 0.05 TCGA-QB-AA9O-06 10 124248979 124248979 C T HTRA1 Missense_Mutation p.S205F 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 10 124402657 124402657 T C DMBT1 Missense_Mutation p.Y2329H 0.62 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 10 124740136 124740136 T C PSTK Silent p.G47G 0.41 TCGA-QB-AA9O-06 10 125516860 125516860 C T CPXM2 Missense_Mutation p.D596N 0.56 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.66 tolerated(0.27) benign(0.011) TCGA-QB-AA9O-06 10 128798544 128798544 G A DOCK1 Missense_Mutation p.G320R 0.70 deleterious(0.01) probably_damaging(0.953) TCGA-QB-AA9O-06 10 129905972 129905972 G A MKI67 Missense_Mutation p.P1378S 0.67 tolerated(0.53) probably_damaging(0.932) TCGA-QB-AA9O-06 10 134912209 134912209 C T GPR123 Missense_Mutation p.T66I 0.66 deleterious(0) possibly_damaging(0.816) TCGA-QB-AA9O-06 10 15254844 15254844 G A FAM171A1 3'UTR 0.38 TCGA-QB-AA9O-06 10 15254845 15254845 G A FAM171A1 3'UTR 0.40 TCGA-QB-AA9O-06 10 15255106 15255106 C T FAM171A1 Silent p.Q827Q 0.25 TCGA-QB-AA9O-06 10 15559101 15559101 C T ITGA8 3'UTR 0.17 TCGA-QB-AA9O-06 10 18789848 18789848 G A CACNB2 Silent p.Q188Q 0.43 TCGA-QB-AA9O-06 10 21097487 21097487 G A NEBL Missense_Mutation p.P905S 0.48 tolerated(0.52) benign(0.158) TCGA-QB-AA9O-06 10 21141535 21141535 T C NEBL Missense_Mutation p.H316R 0.19 deleterious(0.01) possibly_damaging(0.864) TCGA-QB-AA9O-06 10 24762537 24762537 C T KIAA1217 Silent p.S409S 0.60 TCGA-QB-AA9O-06 10 24820819 24820819 C T KIAA1217 Missense_Mutation p.P1048L 0.19 deleterious(0.03) probably_damaging(1) TCGA-QB-AA9O-06 10 29599082 29599082 G A LYZL1 Silent p.R160R 0.58 TCGA-QB-AA9O-06 10 30749639 30749639 T C MAP3K8 Silent p.S426S 0.57 TCGA-QB-AA9O-06 10 33502355 33502355 C T NRP1 Missense_Mutation p.D525N 0.56 tolerated(0.12) benign(0.067) TCGA-QB-AA9O-06 10 37430974 37430974 C T ANKRD30A Silent p.I327I 0.18 TCGA-QB-AA9O-06 10 45430275 45430275 C T TMEM72 Missense_Mutation p.A174V 0.57 tolerated(0.16) benign(0.031) TCGA-QB-AA9O-06 10 48382072 48382072 G A RBP3 Missense_Mutation p.P1193S 0.21 deleterious(0) possibly_damaging(0.876) TCGA-QB-AA9O-06 10 48416374 48416374 T C GDF2 Missense_Mutation p.N107S 0.54 deleterious(0.04) possibly_damaging(0.755) TCGA-QB-AA9O-06 10 48428906 48428906 G A GDF10 Missense_Mutation p.P327L 0.59 deleterious(0.02) benign(0.169) TCGA-QB-AA9O-06 10 49448511 49448511 T A FRMPD2 Missense_Mutation p.S198C 0.08 deleterious(0.02) possibly_damaging(0.784) TCGA-QB-AA9O-06 10 50363893 50363893 C T C10orf128 3'UTR 0.68 TCGA-QB-AA9O-06 10 50902012 50902012 G A C10orf53 Intron 0.81 TCGA-QB-AA9O-06 10 55587175 55587175 C T PCDH15 Missense_Mutation p.E1449K 0.14 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-QB-AA9O-06 10 5791486 5791486 G A FAM208B Silent p.R2034R 0.55 TCGA-QB-AA9O-06 10 60562956 60562956 C T BICC1 Missense_Mutation p.S712F 0.81 deleterious(0.04) possibly_damaging(0.553) TCGA-QB-AA9O-06 10 61432545 61432545 G A SLC16A9 Missense_Mutation p.S108F 0.57 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 10 61830182 61830182 G A ANK3 Missense_Mutation p.S3486L 0.55 benign(0.007) TCGA-QB-AA9O-06 10 61835165 61835165 T G ANK3 Missense_Mutation p.Y1825S 0.64 probably_damaging(0.981) TCGA-QB-AA9O-06 10 61842428 61842428 C T ANK3 Missense_Mutation p.G1423E 0.12 probably_damaging(0.96) TCGA-QB-AA9O-06 10 62149254 62149254 C T ANK3 Missense_Mutation p.E15K 0.52 possibly_damaging(0.522) TCGA-QB-AA9O-06 10 68940116 68940116 G A CTNNA3 Missense_Mutation p.R336C 0.59 deleterious(0) possibly_damaging(0.898) TCGA-QB-AA9O-06 10 68940135 68940135 G A CTNNA3 Silent p.I329I 0.10 TCGA-QB-AA9O-06 10 69959265 69959265 G A MYPN Silent p.G1142G 0.15 TCGA-QB-AA9O-06 10 70450650 70450650 T G TET1 Silent p.T1830T 0.48 TCGA-QB-AA9O-06 10 71175954 71175954 G A TACR2 Silent p.A42A 0.21 TCGA-QB-AA9O-06 10 71634883 71634883 G A COL13A1 Splice_Site p.X134_splice 0.65 TCGA-QB-AA9O-06 10 71634884 71634884 G A COL13A1 Missense_Mutation p.G134R 0.65 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 10 75029369 75029369 C G TTC18 Intron 0.70 TCGA-QB-AA9O-06 10 75185642 75185642 G A MSS51 Silent p.Y332Y 0.18 TCGA-QB-AA9O-06 10 75264748 75264748 C T USP54 Missense_Mutation p.A1391T 0.53 tolerated(0.41) benign(0.129) TCGA-QB-AA9O-06 10 75407222 75407222 G A SYNPO2L Missense_Mutation p.P730S 0.13 tolerated(0.46) benign(0.001) TCGA-QB-AA9O-06 10 7679397 7679397 C T ITIH5 Missense_Mutation p.S149N 0.45 deleterious(0.03) possibly_damaging(0.71) TCGA-QB-AA9O-06 10 8007428 8007428 C T TAF3 Missense_Mutation p.P652L 0.17 tolerated_low_confidence(0.08) benign(0) TCGA-QB-AA9O-06 10 8115935 8115935 C G GATA3 Missense_Mutation p.S428R 0.15 deleterious(0) probably_damaging(0.918) TCGA-QB-AA9O-06 10 81272747 81272747 C T EIF5AL1 Silent p.L114L 0.31 TCGA-QB-AA9O-06 10 82187138 82187138 C T FAM213A Silent p.I154I 0.57 TCGA-QB-AA9O-06 10 859090 859090 G A LARP4B Missense_Mutation p.P665S 0.51 tolerated(0.19) benign(0.015) TCGA-QB-AA9O-06 10 87614323 87614323 G A GRID1 Missense_Mutation p.S388L 0.07 tolerated(0.19) benign(0.419) TCGA-QB-AA9O-06 10 88417798 88417798 C T OPN4 Silent p.S111S 0.37 TCGA-QB-AA9O-06 10 88752220 88752220 T A AGAP11 RNA 0.41 TCGA-QB-AA9O-06 10 91497205 91497205 G A KIF20B Silent p.P829P 0.05 TCGA-QB-AA9O-06 10 94700579 94700579 C T EXOC6 Silent p.F436F 0.16 TCGA-QB-AA9O-06 10 95335884 95335884 C T FFAR4 Missense_Mutation p.P202S 0.61 deleterious(0.01) benign(0) TCGA-QB-AA9O-06 10 95790940 95790940 G A PLCE1 Missense_Mutation p.R46Q 0.14 tolerated_low_confidence(1) benign(0) TCGA-QB-AA9O-06 10 96058365 96058365 G A PLCE1 Silent p.P1799P 0.56 TCGA-QB-AA9O-06 10 96084780 96084780 G A PLCE1 Silent p.K2284K 0.11 TCGA-QB-AA9O-06 10 96112092 96112092 C T NOC3L Silent p.L309L 0.07 TCGA-QB-AA9O-06 10 96333831 96333831 T G HELLS Missense_Mutation p.F198V 0.14 tolerated(0.71) benign(0.016) TCGA-QB-AA9O-06 10 96333832 96333832 T C HELLS Missense_Mutation p.F198S 0.15 tolerated(0.18) benign(0.027) TCGA-QB-AA9O-06 10 96466636 96466636 G A CYP2C18 Silent p.E246E 0.63 TCGA-QB-AA9O-06 10 96701769 96701769 G C CYP2C9 Missense_Mutation p.R108T 0.11 deleterious(0.03) benign(0.027) TCGA-QB-AA9O-06 10 96708949 96708949 T C CYP2C9 Missense_Mutation p.Y243H 0.10 deleterious(0) probably_damaging(0.98) TCGA-QB-AA9O-06 10 97918722 97918722 T G ZNF518A RNA 0.61 TCGA-QB-AA9O-06 11 101353723 101353723 G A TRPC6 Silent p.S489S 0.32 TCGA-QB-AA9O-06 11 103814349 103814349 C T PDGFD Silent p.T201T 0.72 TCGA-QB-AA9O-06 11 105483103 105483103 T A GRIA4 Missense_Mutation p.N63K 0.61 tolerated(0.89) benign(0.005) TCGA-QB-AA9O-06 11 106856797 106856797 C T GUCY1A2 Missense_Mutation p.G122S 0.56 tolerated(0.66) benign(0.005) TCGA-QB-AA9O-06 11 116718264 116718264 G A SIK3 Missense_Mutation p.R1188W 0.70 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-QB-AA9O-06 11 116729253 116729253 G A SIK3 Silent p.F870F 0.63 TCGA-QB-AA9O-06 11 118267090 118267090 G A UBE4A Missense_Mutation p.E1053K 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-QB-AA9O-06 11 119057360 119057360 G A PDZD3 Silent p.A97A 0.44 TCGA-QB-AA9O-06 11 119061430 119061430 C T CCDC153 Missense_Mutation p.E157K 0.51 tolerated(0.51) probably_damaging(0.968) TCGA-QB-AA9O-06 11 11987483 11987483 G A DKK3 Missense_Mutation p.P235S 0.64 deleterious(0.02) benign(0.141) TCGA-QB-AA9O-06 11 121384872 121384872 C T SORL1 Silent p.I351I 0.55 TCGA-QB-AA9O-06 11 12262608 12262608 G A MICAL2 Missense_Mutation p.G746S 0.15 tolerated(0.75) possibly_damaging(0.698) TCGA-QB-AA9O-06 11 122805641 122805641 G A C11orf63 Missense_Mutation p.E498K 0.46 tolerated(0.32) possibly_damaging(0.487) TCGA-QB-AA9O-06 11 123777182 123777182 C T OR8D4 Missense_Mutation p.S15L 0.63 tolerated(0.49) benign(0.002) TCGA-QB-AA9O-06 11 124015989 124015989 C T VWA5A Silent p.L734L 0.58 TCGA-QB-AA9O-06 11 124252919 124252919 G A OR8B2 Silent p.F107F 0.44 TCGA-QB-AA9O-06 11 124266949 124266949 T C OR8B3 Missense_Mutation p.Q100R 0.13 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-QB-AA9O-06 11 124747462 124747462 C T ROBO3 Missense_Mutation p.S965L 0.50 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 11 1265568 1265568 C A MUC5B Silent p.S2486S 0.23 TCGA-QB-AA9O-06 11 1269009 1269009 C T MUC5B Silent p.V3633V 0.33 TCGA-QB-AA9O-06 11 128709801 128709801 A T KCNJ1 Missense_Mutation p.F132Y 0.22 tolerated(0.1) probably_damaging(0.984) TCGA-QB-AA9O-06 11 130332564 130332564 G A ADAMTS15 Silent p.Q477Q 0.24 TCGA-QB-AA9O-06 11 132290077 132290077 G A OPCML 3'UTR 0.54 TCGA-QB-AA9O-06 11 1492583 1492583 G A MOB2 Silent p.F144F 0.39 TCGA-QB-AA9O-06 11 16007892 16007892 G A SOX6 Missense_Mutation p.H661Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 11 16007893 16007893 G A SOX6 Silent p.I660I 0.35 TCGA-QB-AA9O-06 11 18738537 18738537 C T IGSF22 Silent p.L328L 0.27 TCGA-QB-AA9O-06 11 20181504 20181504 C T DBX1 Missense_Mutation p.E123K 0.58 tolerated(0.19) benign(0.02) TCGA-QB-AA9O-06 11 22297659 22297659 C T ANO5 Missense_Mutation p.P812S 0.43 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 11 26547179 26547179 C T ANO3 Intron 0.32 TCGA-QB-AA9O-06 11 30032889 30032889 A T KCNA4 Missense_Mutation p.I446N 0.38 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 11 30602021 30602021 C T MPPED2 5'UTR 0.50 TCGA-QB-AA9O-06 11 33620374 33620374 C T KIAA1549L Missense_Mutation p.P1290L 0.14 deleterious(0.05) probably_damaging(1) TCGA-QB-AA9O-06 11 33620375 33620375 C T KIAA1549L Silent p.P1290P 0.14 TCGA-QB-AA9O-06 11 36250942 36250942 G A LDLRAD3 Missense_Mutation p.V345I 0.21 deleterious_low_confidence(0.01) benign(0.006) TCGA-QB-AA9O-06 11 4410928 4410928 C A TRIM21 Nonsense_Mutation p.E154* 0.04 TCGA-QB-AA9O-06 11 4567008 4567008 G A OR52M1 Silent p.R196R 0.34 TCGA-QB-AA9O-06 11 45672453 45672453 G A CHST1 Silent p.A7A 0.33 TCGA-QB-AA9O-06 11 4674368 4674368 C T OR51E1 Silent p.I204I 0.27 TCGA-QB-AA9O-06 11 47464247 47464247 G A RAPSN Silent p.R217R 0.46 TCGA-QB-AA9O-06 11 4791114 4791114 G A OR51F1 Missense_Mutation p.P12S 0.44 tolerated(0.39) benign(0.015) TCGA-QB-AA9O-06 11 48134384 48134384 C T PTPRJ Silent p.S67S 0.39 TCGA-QB-AA9O-06 11 48285910 48285910 C T OR4X1 Silent p.F166F 0.25 TCGA-QB-AA9O-06 11 48328315 48328315 C T OR4S1 Missense_Mutation p.P181S 0.24 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 11 48346737 48346737 C T OR4C3 Missense_Mutation p.S82F 0.09 deleterious(0.01) probably_damaging(0.961) TCGA-QB-AA9O-06 11 4843021 4843021 C T OR51F2 Missense_Mutation p.R136C 0.40 deleterious(0.02) possibly_damaging(0.855) TCGA-QB-AA9O-06 11 4903424 4903424 T C OR51T1 Missense_Mutation p.C126R 0.11 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 11 4928635 4928635 C T OR51A7 Silent p.F12F 0.31 TCGA-QB-AA9O-06 11 4976333 4976333 C T OR51A2 Missense_Mutation p.G204E 0.31 deleterious(0) benign(0.288) TCGA-QB-AA9O-06 11 49974745 49974745 G A OR4C13 Missense_Mutation p.M257I 0.32 deleterious_low_confidence(0.05) benign(0.141) TCGA-QB-AA9O-06 11 5010966 5010966 G A MMP26 Missense_Mutation p.R63Q 0.18 tolerated(0.07) benign(0) TCGA-QB-AA9O-06 11 5021153 5021153 G A OR51L1 Missense_Mutation p.R314K 0.33 tolerated(1) benign(0.001) TCGA-QB-AA9O-06 11 5068212 5068212 C T OR52J3 Missense_Mutation p.R153C 0.41 deleterious(0) benign(0.015) TCGA-QB-AA9O-06 11 5080531 5080531 G A OR52E2 Silent p.F109F 0.43 TCGA-QB-AA9O-06 11 5247820 5247820 G A HBB Missense_Mutation p.P101L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 11 5274480 5274480 G A HBG2 3'UTR 0.40 TCGA-QB-AA9O-06 11 5275596 5275596 C T HBG2 Missense_Mutation p.D81N 0.13 tolerated(1) benign(0.006) TCGA-QB-AA9O-06 11 5364031 5364031 G A OR51B5 Missense_Mutation p.H242Y 0.31 deleterious(0) probably_damaging(0.995) TCGA-QB-AA9O-06 11 5462512 5462512 G A OR51I1 Missense_Mutation p.S78F 0.16 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 11 5474861 5474861 C T OR51I2 Missense_Mutation p.A48V 0.36 tolerated(1) benign(0.005) TCGA-QB-AA9O-06 11 55065337 55065337 G A TRIM51HP RNA 0.38 TCGA-QB-AA9O-06 11 55321881 55321881 C T OR4C15 Silent p.F33F 0.51 TCGA-QB-AA9O-06 11 55339783 55339783 C T OR4C16 Silent p.F60F 0.42 TCGA-QB-AA9O-06 11 5537111 5537111 G T UBQLNL Missense_Mutation p.N187K 0.31 deleterious(0) possibly_damaging(0.82) TCGA-QB-AA9O-06 11 55587477 55587477 C T OR5D18 Silent p.F124F 0.51 TCGA-QB-AA9O-06 11 558257 558257 G A C11orf35 Intron 0.28 TCGA-QB-AA9O-06 11 5602813 5602813 C T OR52B6 Missense_Mutation p.S236F 0.28 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 11 56086638 56086638 C T OR8K3 Missense_Mutation p.P286S 0.15 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-QB-AA9O-06 11 57088079 57088079 G A TNKS1BP1 Missense_Mutation p.P68S 0.27 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 11 5758230 5758230 G A OR56B1 Missense_Mutation p.G162S 0.46 tolerated(0.67) benign(0.05) TCGA-QB-AA9O-06 11 5776059 5776059 C T OR52N4 Missense_Mutation p.S30F 0.48 deleterious(0.01) probably_damaging(0.933) TCGA-QB-AA9O-06 11 5799018 5799018 G A OR52N5 Missense_Mutation p.H283Y 0.18 deleterious(0) benign(0.4) TCGA-QB-AA9O-06 11 58034467 58034467 C T OR10W1 Missense_Mutation p.M288I 0.51 tolerated(0.21) benign(0.006) TCGA-QB-AA9O-06 11 58170078 58170078 C T OR5B3 Missense_Mutation p.D269N 0.43 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-QB-AA9O-06 11 58190559 58190559 A T OR5B2 Missense_Mutation p.F59Y 0.24 deleterious_low_confidence(0.04) benign(0.018) TCGA-QB-AA9O-06 11 58482889 58482889 C T GLYAT Missense_Mutation p.G30E 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-QB-AA9O-06 11 58722704 58722704 G A GLYATL1 Silent p.V154V 0.51 TCGA-QB-AA9O-06 11 5878384 5878384 A G OR52E8 Silent p.T183T 0.44 TCGA-QB-AA9O-06 11 59271220 59271220 C T OR4D11 Missense_Mutation p.P58S 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-QB-AA9O-06 11 59271750 59271750 G A OR4D11 Silent p.R234R 0.42 TCGA-QB-AA9O-06 11 60064696 60064696 G A MS4A4A Missense_Mutation p.M76I 0.46 tolerated(0.3) benign(0.264) TCGA-QB-AA9O-06 11 6024367 6024367 C T OR56A4 Silent p.V4V 0.36 TCGA-QB-AA9O-06 11 60708748 60708748 C T SLC15A3 Nonsense_Mutation p.W374* 0.43 TCGA-QB-AA9O-06 11 60711216 60711216 A C SLC15A3 Missense_Mutation p.V314G 0.23 tolerated(0.18) benign(0.024) TCGA-QB-AA9O-06 11 61560071 61560071 G A TMEM258 5'UTR 0.53 TCGA-QB-AA9O-06 11 62064947 62064947 G A SCGB1D4 Missense_Mutation p.S80F 0.40 tolerated(0.16) unknown(0) TCGA-QB-AA9O-06 11 62417455 62417455 G A INTS5 Nonsense_Mutation p.Q33* 0.20 TCGA-QB-AA9O-06 11 63175665 63175665 G A SLC22A9 Missense_Mutation p.G457E 0.21 tolerated(0.33) benign(0.111) TCGA-QB-AA9O-06 11 63487136 63487136 C T RTN3 Missense_Mutation p.P388S 0.16 tolerated_low_confidence(0.13) benign(0.382) TCGA-QB-AA9O-06 11 64137852 64137852 C T RPS6KA4 Silent p.V651V 0.23 TCGA-QB-AA9O-06 11 64390262 64390262 C T NRXN2 Missense_Mutation p.R1379Q 0.26 tolerated(0.11) possibly_damaging(0.539) TCGA-QB-AA9O-06 11 64434812 64434812 C T NRXN2 Missense_Mutation p.G570R 0.43 deleterious(0.02) benign(0.207) TCGA-QB-AA9O-06 11 6452878 6452878 G A HPX Silent p.I374I 0.22 TCGA-QB-AA9O-06 11 64533591 64533591 G A SF1 Intron 0.39 TCGA-QB-AA9O-06 11 64606360 64606360 G A CDC42BPG Silent p.F297F 0.38 TCGA-QB-AA9O-06 11 65267924 65267924 C T MALAT1 RNA 0.35 TCGA-QB-AA9O-06 11 65267925 65267925 C T MALAT1 RNA 0.35 TCGA-QB-AA9O-06 11 65375455 65375455 A G MAP3K11 Missense_Mutation p.V336A 0.33 deleterious(0.03) probably_damaging(0.983) TCGA-QB-AA9O-06 11 65732014 65732014 C T SART1 Missense_Mutation p.P134S 0.19 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 11 66191416 66191416 C T NPAS4 Missense_Mutation p.S352F 0.19 tolerated(0.13) benign(0.218) TCGA-QB-AA9O-06 11 66321543 66321543 C T CTD-3074O7.2 3'Flank 0.53 TCGA-QB-AA9O-06 11 66468740 66468740 G A SPTBN2 Missense_Mutation p.R944W 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-QB-AA9O-06 11 67047111 67047111 T G ADRBK1 Missense_Mutation p.S127R 0.34 tolerated(0.18) benign(0.008) TCGA-QB-AA9O-06 11 67430818 67430818 G A ALDH3B2 Silent p.S342S 0.24 TCGA-QB-AA9O-06 11 68517910 68517910 G T MTL5 Silent p.A73A 0.25 TCGA-QB-AA9O-06 11 68549339 68549339 C G CPT1A Missense_Mutation p.V418L 0.27 tolerated(0.27) benign(0.193) TCGA-QB-AA9O-06 11 70281759 70281759 G A CTTN Missense_Mutation p.V563I 0.48 tolerated_low_confidence(0.37) benign(0) TCGA-QB-AA9O-06 11 70333552 70333552 C T SHANK2 Missense_Mutation p.G950E 0.31 tolerated(0.08) benign(0.063) TCGA-QB-AA9O-06 11 70507886 70507886 C T SHANK2 Intron 0.48 TCGA-QB-AA9O-06 11 71734171 71734171 G A NUMA1 Silent p.S77S 0.22 TCGA-QB-AA9O-06 11 73076491 73076491 C T ARHGEF17 Silent p.S1869S 0.13 TCGA-QB-AA9O-06 11 76257250 76257250 C T C11orf30 Missense_Mutation p.P1228L 0.32 deleterious_low_confidence(0.04) benign(0) TCGA-QB-AA9O-06 11 77775158 77775158 G A THRSP Silent p.R77R 0.42 TCGA-QB-AA9O-06 11 8161723 8161723 G A RIC3 Missense_Mutation p.P48S 0.42 deleterious(0) probably_damaging(0.983) TCGA-QB-AA9O-06 11 82951808 82951808 C T ANKRD42 Missense_Mutation p.H315Y 0.46 tolerated(0.27) possibly_damaging(0.85) TCGA-QB-AA9O-06 11 84028069 84028069 G A DLG2 Intron 0.26 TCGA-QB-AA9O-06 11 85436401 85436401 G A SYTL2 Missense_Mutation p.P367S 0.51 tolerated(1) benign(0.001) TCGA-QB-AA9O-06 11 85456745 85456745 G A SYTL2 Silent p.F108F 0.51 TCGA-QB-AA9O-06 11 8704345 8704345 C T RPL27A 5'UTR 0.45 TCGA-QB-AA9O-06 11 92087292 92087292 C T FAT3 Silent p.L672L 0.56 TCGA-QB-AA9O-06 11 92531301 92531301 G A FAT3 Missense_Mutation p.G1708R 0.53 probably_damaging(1) TCGA-QB-AA9O-06 11 92533856 92533856 C T FAT3 Silent p.D2559D 0.69 TCGA-QB-AA9O-06 11 94352981 94352981 G A PIWIL4 Missense_Mutation p.E742K 0.49 tolerated(0.07) benign(0.041) TCGA-QB-AA9O-06 12 101491696 101491696 G T ANO4 Missense_Mutation p.W625L 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-QB-AA9O-06 12 101560399 101560399 G A SLC5A8 Missense_Mutation p.P467S 0.52 tolerated(0.16) benign(0.005) TCGA-QB-AA9O-06 12 102589788 102589788 C T PARPBP Silent p.L487L 0.37 TCGA-QB-AA9O-06 12 103240696 103240696 C T PAH Missense_Mutation p.E316K 0.29 deleterious(0) possibly_damaging(0.595) TCGA-QB-AA9O-06 12 104171730 104171730 C T NT5DC3 Silent p.L508L 0.20 TCGA-QB-AA9O-06 12 106897984 106897984 T A POLR3B Missense_Mutation p.F1075Y 0.14 tolerated(0.13) benign(0.26) TCGA-QB-AA9O-06 12 108147731 108147731 C T PRDM4 Missense_Mutation p.E101K 0.19 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-QB-AA9O-06 12 108685930 108685930 G A CMKLR1 Silent p.F270F 0.39 TCGA-QB-AA9O-06 12 108686185 108686185 C T CMKLR1 Silent p.G185G 0.31 TCGA-QB-AA9O-06 12 110781065 110781065 C T ATP2A2 Missense_Mutation p.P783S 0.35 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 12 11083314 11083314 G A PRH2 Missense_Mutation p.G52R 0.14 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-QB-AA9O-06 12 111748365 111748365 C T CUX2 Silent p.A593A 0.30 TCGA-QB-AA9O-06 12 112665972 112665972 G A HECTD4 Missense_Mutation p.H2113Y 0.35 probably_damaging(0.942) TCGA-QB-AA9O-06 12 113810483 113810483 G A PLBD2 Silent p.V138V 0.32 TCGA-QB-AA9O-06 12 11506909 11506909 C T PRB1 Missense_Mutation p.G43E 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-QB-AA9O-06 12 117701701 117701701 G A NOS1 Silent p.L739L 0.36 TCGA-QB-AA9O-06 12 117728189 117728189 G A NOS1 Missense_Mutation p.P299S 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-QB-AA9O-06 12 118671477 118671477 A C TAOK3 Splice_Site p.X215_splice 0.25 TCGA-QB-AA9O-06 12 118693443 118693443 G A TAOK3 5'UTR 0.28 TCGA-QB-AA9O-06 12 120899885 120899885 G A SRSF9 Silent p.G201G 0.50 TCGA-QB-AA9O-06 12 122107254 122107254 C G MORN3 Missense_Mutation p.V46L 0.43 tolerated(0.26) benign(0.002) TCGA-QB-AA9O-06 12 123253443 123253443 A C DENR Missense_Mutation p.D176A 0.39 deleterious(0) possibly_damaging(0.793) TCGA-QB-AA9O-06 12 123746167 123746167 G A CDK2AP1 3'UTR 0.57 TCGA-QB-AA9O-06 12 124229491 124229491 G A ATP6V0A2 Missense_Mutation p.R526Q 0.13 tolerated(0.73) benign(0.001) TCGA-QB-AA9O-06 12 124242565 124242565 G A ATP6V0A2 Missense_Mutation p.D853N 0.32 deleterious(0.05) benign(0.002) TCGA-QB-AA9O-06 12 124413860 124413860 G A DNAH10 Missense_Mutation p.M3997I 0.44 benign(0.21) TCGA-QB-AA9O-06 12 124821333 124821333 G A NCOR2 Silent p.P2027P 0.33 TCGA-QB-AA9O-06 12 125299543 125299543 G A SCARB1 Silent p.I134I 0.27 TCGA-QB-AA9O-06 12 125834246 125834246 C T TMEM132B Missense_Mutation p.L101F 0.45 tolerated(0.08) benign(0.088) TCGA-QB-AA9O-06 12 126068426 126068426 C T TMEM132B Silent p.L436L 0.34 TCGA-QB-AA9O-06 12 126068454 126068454 A G TMEM132B Missense_Mutation p.K446E 0.19 deleterious(0.02) benign(0.423) TCGA-QB-AA9O-06 12 126128807 126128807 C T TMEM132B Silent p.I536I 0.36 TCGA-QB-AA9O-06 12 129822203 129822203 C T TMEM132D Silent p.L425L 0.37 TCGA-QB-AA9O-06 12 130847589 130847589 G A PIWIL1 Missense_Mutation p.V699M 0.32 deleterious(0) probably_damaging(0.957) TCGA-QB-AA9O-06 12 132334539 132334539 C T MMP17 Missense_Mutation p.P466L 0.33 deleterious(0) probably_damaging(0.994) TCGA-QB-AA9O-06 12 132539675 132539675 C T EP400 Silent p.T2602T 0.26 TCGA-QB-AA9O-06 12 13717222 13717222 G A GRIN2B Missense_Mutation p.H984Y 0.13 deleterious(0.01) possibly_damaging(0.881) TCGA-QB-AA9O-06 12 14689629 14689629 G A PLBD1 Nonsense_Mutation p.Q192* 0.21 TCGA-QB-AA9O-06 12 14773998 14773998 C T GUCY2C Nonsense_Mutation p.W918* 0.20 TCGA-QB-AA9O-06 12 15103617 15103617 C T ARHGDIB Silent p.V10V 0.21 TCGA-QB-AA9O-06 12 15777233 15777233 A T EPS8 Missense_Mutation p.V718D 0.29 tolerated(0.2) benign(0.136) TCGA-QB-AA9O-06 12 15784508 15784508 G A EPS8 Missense_Mutation p.P638S 0.57 tolerated(0.57) benign(0.301) TCGA-QB-AA9O-06 12 18644400 18644400 G A PIK3C2G Missense_Mutation p.E860K 0.14 tolerated(0.15) probably_damaging(0.985) TCGA-QB-AA9O-06 12 18865877 18865877 C T PLCZ1 Missense_Mutation p.D205N 0.27 deleterious(0.02) probably_damaging(1) TCGA-QB-AA9O-06 12 21200105 21200105 G A SLCO1B7 Silent p.V316V 0.33 TCGA-QB-AA9O-06 12 21422497 21422497 C T SLCO1A2 Silent p.L666L 0.30 TCGA-QB-AA9O-06 12 22048216 22048216 A G ABCC9 Missense_Mutation p.V551A 0.14 deleterious(0.04) benign(0.041) TCGA-QB-AA9O-06 12 22068783 22068783 C T ABCC9 Missense_Mutation p.G212E 0.27 deleterious(0.01) probably_damaging(0.91) TCGA-QB-AA9O-06 12 25222288 25222288 C T LRMP 5'UTR 0.42 TCGA-QB-AA9O-06 12 26868298 26868298 G A ITPR2 Silent p.F263F 0.13 TCGA-QB-AA9O-06 12 27152603 27152603 G T TM7SF3 Missense_Mutation p.L85I 0.15 tolerated(0.44) benign(0.219) TCGA-QB-AA9O-06 12 32145512 32145512 C T KIAA1551 3'UTR 0.38 TCGA-QB-AA9O-06 12 330608 330608 G A SLC6A13 Silent p.S540S 0.30 TCGA-QB-AA9O-06 12 33559909 33559909 C T SYT10 Missense_Mutation p.E298K 0.43 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 12 39947891 39947891 A G ABCD2 Silent p.G682G 0.19 TCGA-QB-AA9O-06 12 43945044 43945044 C T ADAMTS20 Missense_Mutation p.E41K 0.33 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 12 45059279 45059279 A G NELL2 Missense_Mutation p.Y528H 0.19 deleterious(0) probably_damaging(0.977) TCGA-QB-AA9O-06 12 4700386 4700386 C T DYRK4 Missense_Mutation p.H14Y 0.38 tolerated(0.21) benign(0.248) TCGA-QB-AA9O-06 12 47160426 47160426 C T SLC38A4 3'UTR 0.25 TCGA-QB-AA9O-06 12 4719335 4719335 C T DYRK4 Missense_Mutation p.P344S 0.18 deleterious(0) probably_damaging(0.991) TCGA-QB-AA9O-06 12 48062737 48062737 A C RPAP3 Missense_Mutation p.L559V 0.48 deleterious(0) probably_damaging(0.973) TCGA-QB-AA9O-06 12 48723859 48723859 C T H1FNT 3'UTR 0.25 TCGA-QB-AA9O-06 12 49412648 49412648 G A PRKAG1 5'Flank 0.31 TCGA-QB-AA9O-06 12 49412649 49412649 G A PRKAG1 5'Flank 0.46 TCGA-QB-AA9O-06 12 49666449 49666449 C T TUBA1C Silent p.P263P 0.51 TCGA-QB-AA9O-06 12 5021377 5021377 G A KCNA1 Missense_Mutation p.G278E 0.40 tolerated(0.17) benign(0.006) TCGA-QB-AA9O-06 12 50483710 50483710 T G SMARCD1 Missense_Mutation p.V272G 0.29 deleterious(0) benign(0.179) TCGA-QB-AA9O-06 12 52159882 52159882 C T SCN8A Intron 0.53 TCGA-QB-AA9O-06 12 52312887 52312887 G A ACVRL1 Silent p.L455L 0.38 TCGA-QB-AA9O-06 12 52632463 52632463 G A KRT7 Splice_Site p.X200_splice 0.16 TCGA-QB-AA9O-06 12 52632512 52632512 G A KRT7 Missense_Mutation p.D216N 0.45 tolerated(0.12) benign(0.009) TCGA-QB-AA9O-06 12 52699530 52699530 G A KRT86 Missense_Mutation p.M328I 0.18 tolerated(0.2) benign(0.013) TCGA-QB-AA9O-06 12 52863219 52863219 C T KRT6C Missense_Mutation p.E479K 0.20 deleterious(0) unknown(0) TCGA-QB-AA9O-06 12 52881449 52881449 T G KRT6A 3'UTR 0.24 TCGA-QB-AA9O-06 12 52881450 52881450 C T KRT6A 3'UTR 0.22 TCGA-QB-AA9O-06 12 53086396 53086396 A C KRT77 Missense_Mutation p.D412E 0.39 tolerated(0.19) probably_damaging(0.923) TCGA-QB-AA9O-06 12 53203192 53203192 T C KRT4 Missense_Mutation p.N270S 0.07 deleterious(0.04) benign(0.065) TCGA-QB-AA9O-06 12 53553467 53553467 G A CSAD Silent p.F443F 0.19 TCGA-QB-AA9O-06 12 54756377 54756377 C T GPR84 3'UTR 0.41 TCGA-QB-AA9O-06 12 551273 551273 C T CCDC77 3'UTR 0.67 TCGA-QB-AA9O-06 12 55421187 55421187 G A NEUROD4 Missense_Mutation p.G322R 0.47 tolerated(0.13) possibly_damaging(0.777) TCGA-QB-AA9O-06 12 55688210 55688210 G A OR6C6 Silent p.S269S 0.31 TCGA-QB-AA9O-06 12 55715321 55715321 G A OR6C1 Silent p.%3D 0.25 TCGA-QB-AA9O-06 12 55794749 55794749 C T OR6C65 Missense_Mutation p.S146F 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-QB-AA9O-06 12 55820729 55820729 G T OR6C76 Missense_Mutation p.R231I 0.17 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-QB-AA9O-06 12 56030862 56030862 C T OR10P1 Silent p.L63L 0.26 TCGA-QB-AA9O-06 12 57437120 57437120 C T MYO1A Missense_Mutation p.M305I 0.37 tolerated(0.05) benign(0.008) TCGA-QB-AA9O-06 12 57586724 57586724 G A LRP1 Missense_Mutation p.R2509Q 0.32 benign(0.067) TCGA-QB-AA9O-06 12 62777885 62777885 C T USP15 Silent p.N425N 0.36 TCGA-QB-AA9O-06 12 63114064 63114064 G A PPM1H Silent p.F320F 0.29 TCGA-QB-AA9O-06 12 63974541 63974541 C T DPY19L2 Missense_Mutation p.G601S 0.46 deleterious(0) probably_damaging(0.955) TCGA-QB-AA9O-06 12 64491068 64491068 G A SRGAP1 Missense_Mutation p.V576I 0.43 tolerated(0.19) benign(0.252) TCGA-QB-AA9O-06 12 653583 653583 T G B4GALNT3 Missense_Mutation p.F144V 0.16 deleterious(0) possibly_damaging(0.872) TCGA-QB-AA9O-06 12 69080743 69080743 G A NUP107 5'UTR 0.41 TCGA-QB-AA9O-06 12 71016262 71016262 C T PTPRB Missense_Mutation p.E206K 0.28 tolerated_low_confidence(0.77) benign(0.002) TCGA-QB-AA9O-06 12 71286734 71286734 G A PTPRR Missense_Mutation p.H28Y 0.32 deleterious_low_confidence(0) benign(0.113) TCGA-QB-AA9O-06 12 7301658 7301658 T G CLSTN3 Missense_Mutation p.S646R 0.45 tolerated(0.08) benign(0.02) TCGA-QB-AA9O-06 12 7470711 7470711 C T ACSM4 Missense_Mutation p.S285F 0.42 deleterious(0) possibly_damaging(0.722) TCGA-QB-AA9O-06 12 75892396 75892396 G A KRR1 3'UTR 0.55 TCGA-QB-AA9O-06 12 76881291 76881291 G A OSBPL8 Missense_Mutation p.S14L 0.12 tolerated_low_confidence(0.19) benign(0) TCGA-QB-AA9O-06 12 81472097 81472097 C T ACSS3 Silent p.F66F 0.35 TCGA-QB-AA9O-06 12 86377385 86377385 G A MGAT4C Missense_Mutation p.H71Y 0.17 tolerated(0.31) possibly_damaging(0.892) TCGA-QB-AA9O-06 12 91558389 91558389 T C DCN Missense_Mutation p.N106S 0.18 tolerated(0.68) benign(0.001) TCGA-QB-AA9O-06 12 9345254 9345254 G A PZP Missense_Mutation p.R446C 0.48 deleterious(0.03) benign(0.109) TCGA-QB-AA9O-06 12 95889798 95889798 C T METAP2 Missense_Mutation p.A264V 0.20 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 12 96389462 96389462 T C HAL Missense_Mutation p.N76S 0.42 deleterious_low_confidence(0.04) benign(0.033) TCGA-QB-AA9O-06 12 96396818 96396818 G A LTA4H Silent p.S546S 0.38 TCGA-QB-AA9O-06 13 101264726 101264726 G A TMTC4 Silent p.L664L 0.55 TCGA-QB-AA9O-06 13 101714324 101714324 C T NALCN Missense_Mutation p.R1584K 0.32 tolerated(0.37) benign(0.145) TCGA-QB-AA9O-06 13 103446060 103446060 C T KDELC1 Missense_Mutation p.R162K 0.46 tolerated(1) benign(0.006) TCGA-QB-AA9O-06 13 110833689 110833689 G A COL4A1 Missense_Mutation p.R715C 0.38 possibly_damaging(0.666) TCGA-QB-AA9O-06 13 113333866 113333866 C T C13orf35 Missense_Mutation p.A58V 0.49 tolerated_low_confidence(0.13) possibly_damaging(0.682) TCGA-QB-AA9O-06 13 113513745 113513745 C T ATP11A Silent p.F902F 0.35 TCGA-QB-AA9O-06 13 20716810 20716810 G A GJA3 Silent p.F206F 0.48 TCGA-QB-AA9O-06 13 20797192 20797192 C T GJB6 Missense_Mutation p.R143Q 0.35 deleterious(0) probably_damaging(0.982) TCGA-QB-AA9O-06 13 20987431 20987431 G A CRYL1 Silent p.L243L 0.40 TCGA-QB-AA9O-06 13 25671031 25671031 G A PABPC3 Missense_Mutation p.G232E 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-QB-AA9O-06 13 29001963 29001963 C T FLT1 Missense_Mutation p.G401E 0.37 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 13 29600401 29600401 C T MTUS2 Silent p.T532T 0.32 TCGA-QB-AA9O-06 13 29855930 29855930 C T MTUS2 Missense_Mutation p.P922S 0.08 tolerated(0.21) benign(0.007) TCGA-QB-AA9O-06 13 32335931 32335931 G A RXFP2 Silent p.Q104Q 0.11 TCGA-QB-AA9O-06 13 32705849 32705849 G A FRY Missense_Mutation p.E253K 0.14 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 13 32913133 32913133 T G BRCA2 Missense_Mutation p.D1547E 0.32 tolerated(0.26) benign(0.331) TCGA-QB-AA9O-06 13 33703231 33703231 G A STARD13 Missense_Mutation p.S528F 0.48 deleterious(0.03) benign(0.013) TCGA-QB-AA9O-06 13 39586971 39586971 G A PROSER1 Silent p.F806F 0.06 TCGA-QB-AA9O-06 13 41897221 41897221 C T NAA16 Silent p.R144R 0.55 TCGA-QB-AA9O-06 13 43987071 43987071 G A ENOX1 5'UTR 0.55 TCGA-QB-AA9O-06 13 47351676 47351676 A T ESD Missense_Mutation p.F228Y 0.10 deleterious(0.04) benign(0.29) TCGA-QB-AA9O-06 13 49089409 49089409 G A RCBTB2 Missense_Mutation p.S94F 0.62 tolerated(0.22) benign(0.149) TCGA-QB-AA9O-06 13 50235084 50235084 G A EBPL 3'UTR 0.56 TCGA-QB-AA9O-06 13 51825682 51825682 C T FAM124A Missense_Mutation p.P96L 0.67 tolerated(0.71) benign(0.013) TCGA-QB-AA9O-06 13 52439831 52439831 C T CCDC70 Missense_Mutation p.S106F 0.72 deleterious(0.01) benign(0.101) TCGA-QB-AA9O-06 13 52951930 52951930 G A THSD1 Silent p.L725L 0.61 TCGA-QB-AA9O-06 13 53227222 53227222 C T SUGT1 Missense_Mutation p.P27L 0.65 tolerated(0.23) possibly_damaging(0.837) TCGA-QB-AA9O-06 13 53624282 53624282 T C OLFM4 Silent p.Y303Y 0.73 TCGA-QB-AA9O-06 13 67205429 67205429 G A PCDH9 Missense_Mutation p.P1085S 0.06 deleterious(0.04) benign(0.158) TCGA-QB-AA9O-06 13 67205483 67205483 C T PCDH9 Missense_Mutation p.G1067S 0.60 deleterious(0.01) benign(0.083) TCGA-QB-AA9O-06 13 70413273 70413273 G A KLHL1 Missense_Mutation p.H417Y 0.16 deleterious(0.03) benign(0.424) TCGA-QB-AA9O-06 13 70681815 70681815 C T KLHL1 Missense_Mutation p.R6Q 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-QB-AA9O-06 13 73428277 73428277 G A PIBF1 Missense_Mutation p.D436N 0.14 tolerated(0.22) benign(0.003) TCGA-QB-AA9O-06 13 78337291 78337291 C T SLAIN1 Missense_Mutation p.P406L 0.15 deleterious(0) probably_damaging(0.958) TCGA-QB-AA9O-06 13 79216260 79216260 A C RNF219 Nonsense_Mutation p.Y99* 0.07 TCGA-QB-AA9O-06 13 95696570 95696570 C T ABCC4 Silent p.R1193R 0.24 TCGA-QB-AA9O-06 13 95830010 95830010 C T ABCC4 Missense_Mutation p.D560N 0.40 tolerated(0.07) possibly_damaging(0.879) TCGA-QB-AA9O-06 13 97639707 97639707 C T OXGR1 Missense_Mutation p.D103N 0.44 tolerated(0.16) benign(0.019) TCGA-QB-AA9O-06 13 99337128 99337128 G A SLC15A1 Silent p.V659V 0.34 TCGA-QB-AA9O-06 14 100357545 100357545 G A EML1 Silent p.K195K 0.35 TCGA-QB-AA9O-06 14 101341414 101341414 C T MIR665 RNA 0.21 TCGA-QB-AA9O-06 14 102504811 102504811 C T DYNC1H1 Silent p.Y3641Y 0.32 TCGA-QB-AA9O-06 14 102815018 102815018 T A CINP Missense_Mutation p.H187L 0.18 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 14 105239822 105239822 C T AKT1 Silent p.S266S 0.42 TCGA-QB-AA9O-06 14 105421842 105421842 G A AHNAK2 Silent p.A148A 0.36 TCGA-QB-AA9O-06 14 105716364 105716364 C T BTBD6 Silent p.N271N 0.44 TCGA-QB-AA9O-06 14 106330048 106330048 C T IGHJ5 Missense_Mutation p.G9R 0.44 probably_damaging(1) TCGA-QB-AA9O-06 14 106494204 106494204 T A IGHV2-5 Missense_Mutation p.K96N 0.41 tolerated(0.08) benign(0.004) TCGA-QB-AA9O-06 14 106573467 106573467 G A IGHV3-11 Silent p.L39L 0.35 TCGA-QB-AA9O-06 14 106586561 106586561 G A IGHV3-13 Silent p.F9F 0.29 TCGA-QB-AA9O-06 14 106610746 106610746 G A IGHV3-15 Silent p.F9F 0.37 TCGA-QB-AA9O-06 14 20010292 20010292 G A POTEM Intron 0.38 TCGA-QB-AA9O-06 14 20296445 20296445 C T OR4N2 Missense_Mutation p.P280S 0.13 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 14 20404083 20404083 T G OR4K1 Missense_Mutation p.F86L 0.21 tolerated(1) benign(0.001) TCGA-QB-AA9O-06 14 20483199 20483199 C T OR4K14 Missense_Mutation p.D52N 0.34 tolerated(0.05) benign(0.016) TCGA-QB-AA9O-06 14 20612345 20612345 G A OR4N5 Missense_Mutation p.G151R 0.31 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 14 20665671 20665671 G A OR11G2 Silent p.R59R 0.15 TCGA-QB-AA9O-06 14 20692741 20692741 C T OR11H6 Silent p.I291I 0.29 TCGA-QB-AA9O-06 14 20843979 20843979 G A TEP1 Missense_Mutation p.H2100Y 0.33 tolerated(0.09) benign(0.001) TCGA-QB-AA9O-06 14 21796580 21796580 C A RPGRIP1 Intron 0.37 TCGA-QB-AA9O-06 14 22133907 22133907 G A OR4E2 Missense_Mutation p.G204E 0.28 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 14 22279979 22279979 C T TRAV9-1 Silent p.V56V 0.35 TCGA-QB-AA9O-06 14 22362967 22362967 C T TRAV8-4 Missense_Mutation p.S33F 0.39 tolerated(0.14) benign(0.091) TCGA-QB-AA9O-06 14 22409786 22409786 C T TRAV9-2 Silent p.F92F 0.33 TCGA-QB-AA9O-06 14 22465870 22465870 G A TRAV17 5'UTR 0.38 TCGA-QB-AA9O-06 14 22521111 22521111 C T TRAV21 Silent p.F44F 0.33 TCGA-QB-AA9O-06 14 22592238 22592238 G A TRAV26-1 Missense_Mutation p.R108K 0.24 tolerated(0.07) benign(0.287) TCGA-QB-AA9O-06 14 22636640 22636640 G A TRAV30 Silent p.V31V 0.48 TCGA-QB-AA9O-06 14 22636850 22636850 C T TRAV30 Silent p.L101L 0.35 TCGA-QB-AA9O-06 14 22934729 22934729 G A TRDC 3'UTR 0.34 TCGA-QB-AA9O-06 14 23240112 23240112 C T OXA1L Silent p.F371F 0.37 TCGA-QB-AA9O-06 14 23817785 23817785 G A SLC22A17 Missense_Mutation p.L208F 0.32 deleterious(0.03) possibly_damaging(0.617) TCGA-QB-AA9O-06 14 23817786 23817786 G A SLC22A17 Silent p.A207A 0.33 TCGA-QB-AA9O-06 14 23938903 23938903 G A NGDN 5'UTR 0.46 TCGA-QB-AA9O-06 14 24109063 24109063 G A DHRS2 Missense_Mutation p.V127I 0.33 deleterious(0.05) possibly_damaging(0.86) TCGA-QB-AA9O-06 14 24470279 24470279 T G DHRS4L2 Missense_Mutation p.F173V 0.14 deleterious(0.01) benign(0.221) TCGA-QB-AA9O-06 14 24845920 24845920 T A NFATC4 Missense_Mutation p.F889Y 0.23 tolerated_low_confidence(0.07) probably_damaging(0.916) TCGA-QB-AA9O-06 14 24885335 24885335 G A NYNRIN Silent p.K1460K 0.23 TCGA-QB-AA9O-06 14 24902171 24902171 C T KHNYN Missense_Mutation p.L504F 0.43 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 14 25078765 25078765 C T GZMH Missense_Mutation p.E19K 0.41 tolerated(0.05) possibly_damaging(0.45) TCGA-QB-AA9O-06 14 26917836 26917836 C T NOVA1 Missense_Mutation p.A285T 0.27 tolerated(0.19) unknown(0) TCGA-QB-AA9O-06 14 26949269 26949269 G A NOVA1 Nonsense_Mutation p.R121* 0.24 TCGA-QB-AA9O-06 14 31071221 31071222 - A G2E3 Frame_Shift_Ins p.H301Tfs*7 0.27 TCGA-QB-AA9O-06 14 31609152 31609152 A G HECTD1 Silent p.I975I 0.39 TCGA-QB-AA9O-06 14 31609154 31609154 T A HECTD1 Missense_Mutation p.I975F 0.39 deleterious(0) probably_damaging(0.943) TCGA-QB-AA9O-06 14 36339845 36339845 A T BRMS1L 3'UTR 0.23 TCGA-QB-AA9O-06 14 38724343 38724343 G A CLEC14A Silent p.T295T 0.12 TCGA-QB-AA9O-06 14 39717354 39717354 G A MIA2 Intron 0.36 TCGA-QB-AA9O-06 14 39722364 39722364 C T MIA2 Missense_Mutation p.L626F 0.45 tolerated(0.07) probably_damaging(0.999) TCGA-QB-AA9O-06 14 45653047 45653047 T C FANCM Missense_Mutation p.V1486A 0.33 tolerated(0.78) benign(0.001) TCGA-QB-AA9O-06 14 45654539 45654539 T C FANCM Silent p.F1545F 0.32 TCGA-QB-AA9O-06 14 47530766 47530766 C T MDGA2 Missense_Mutation p.R404Q 0.30 tolerated(0.34) probably_damaging(0.998) TCGA-QB-AA9O-06 14 50750674 50750674 G A L2HGDH Silent p.F206F 0.35 TCGA-QB-AA9O-06 14 51446128 51446128 C T TRIM9 Missense_Mutation p.V683I 0.22 tolerated(0.53) benign(0.05) TCGA-QB-AA9O-06 14 53066928 53066928 C T GPR137C Nonsense_Mutation p.Q196* 0.45 TCGA-QB-AA9O-06 14 57938222 57938222 G A C14orf105 Missense_Mutation p.H248Y 0.37 tolerated(1) benign(0.422) TCGA-QB-AA9O-06 14 63269125 63269125 C T KCNH5 Missense_Mutation p.E582K 0.37 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 14 63417025 63417025 G A KCNH5 Missense_Mutation p.P399S 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-QB-AA9O-06 14 64416590 64416590 C T SYNE2 Silent p.S152S 0.38 TCGA-QB-AA9O-06 14 64468779 64468779 C T SYNE2 Missense_Mutation p.R1256C 0.36 benign(0.022) TCGA-QB-AA9O-06 14 65240078 65240078 C T SPTB Missense_Mutation p.E1680K 0.34 tolerated(0.16) probably_damaging(0.945) TCGA-QB-AA9O-06 14 65240079 65240079 C T SPTB Silent p.A1679A 0.34 TCGA-QB-AA9O-06 14 65271774 65271774 C T SPTB Silent p.T61T 0.32 TCGA-QB-AA9O-06 14 66188681 66188681 C T FUT8 Silent p.L342L 0.32 TCGA-QB-AA9O-06 14 68123150 68123150 C A VTI1B Nonsense_Mutation p.E175* 0.32 TCGA-QB-AA9O-06 14 70515509 70515509 G A SLC8A3 Silent p.F794F 0.26 TCGA-QB-AA9O-06 14 70925007 70925007 G A ADAM21 Missense_Mutation p.G264E 0.42 tolerated(0.83) benign(0.013) TCGA-QB-AA9O-06 14 74824910 74824910 G A VRTN Nonsense_Mutation p.W475* 0.14 TCGA-QB-AA9O-06 14 75018965 75018965 C T LTBP2 Missense_Mutation p.G442R 0.44 tolerated(0.23) possibly_damaging(0.823) TCGA-QB-AA9O-06 14 77242295 77242295 C T VASH1 Silent p.F197F 0.39 TCGA-QB-AA9O-06 14 77294863 77294863 C T C14orf166B Intron 0.46 TCGA-QB-AA9O-06 14 77808306 77808306 C T TMED8 Silent p.E262E 0.21 TCGA-QB-AA9O-06 14 78390841 78390841 C T ADCK1 Silent p.F300F 0.20 TCGA-QB-AA9O-06 14 78399825 78399825 C T ADCK1 3'UTR 0.39 TCGA-QB-AA9O-06 14 79933703 79933703 C T NRXN3 Silent p.I761I 0.31 TCGA-QB-AA9O-06 14 88478280 88478280 G A GPR65 3'UTR 0.62 TCGA-QB-AA9O-06 14 88652406 88652406 C T KCNK10 Missense_Mutation p.D369N 0.39 deleterious(0.04) possibly_damaging(0.691) TCGA-QB-AA9O-06 14 88737179 88737179 G A KCNK10 Intron 0.40 TCGA-QB-AA9O-06 14 91739833 91739833 C T CCDC88C Silent p.E1741E 0.29 TCGA-QB-AA9O-06 14 91773466 91773466 C T CCDC88C Silent p.G1037G 0.24 TCGA-QB-AA9O-06 14 92189443 92189443 C T CATSPERB Missense_Mutation p.G87R 0.42 tolerated(0.5) benign(0.002) TCGA-QB-AA9O-06 14 94079300 94079300 C T UNC79 Silent p.A1127A 0.42 TCGA-QB-AA9O-06 14 94394875 94394875 G A FAM181A Missense_Mutation p.D144N 0.12 tolerated(0.32) benign(0.003) TCGA-QB-AA9O-06 14 94718186 94718186 C T PPP4R4 Silent p.F606F 0.42 TCGA-QB-AA9O-06 14 94741723 94741723 G A PPP4R4 Missense_Mutation p.R821Q 0.34 tolerated_low_confidence(0.16) benign(0.08) TCGA-QB-AA9O-06 14 94741724 94741724 G A PPP4R4 Silent p.R821R 0.33 TCGA-QB-AA9O-06 14 94780446 94780446 C T SERPINA6 Silent p.G180G 0.38 TCGA-QB-AA9O-06 14 94780932 94780932 C T SERPINA6 Nonsense_Mutation p.W18* 0.34 TCGA-QB-AA9O-06 14 94844753 94844753 G A SERPINA1 3'UTR 0.48 TCGA-QB-AA9O-06 14 95081348 95081348 G A SERPINA3 Silent p.G190G 0.30 TCGA-QB-AA9O-06 14 96131383 96131383 G A TCL6 RNA 0.39 TCGA-QB-AA9O-06 14 96180284 96180284 C T TCL1A Silent p.E40E 0.37 TCGA-QB-AA9O-06 14 96707745 96707745 C T BDKRB2 Silent p.P360P 0.34 TCGA-QB-AA9O-06 14 96730012 96730012 C T RP11-404P21.8 Missense_Mutation p.H66Y 0.37 tolerated(1) unknown(0) TCGA-QB-AA9O-06 14 99723994 99723994 A C BCL11B Missense_Mutation p.C81G 0.18 deleterious(0) benign(0.063) TCGA-QB-AA9O-06 15 102358639 102358639 G A OR4F15 Missense_Mutation p.D84N 0.51 deleterious_low_confidence(0.03) benign(0.157) TCGA-QB-AA9O-06 15 23931560 23931560 C T NDN Missense_Mutation p.E269K 0.24 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 15 23931585 23931585 G A NDN Silent p.F260F 0.35 TCGA-QB-AA9O-06 15 24922414 24922414 C T NPAP1 Missense_Mutation p.A467V 0.25 tolerated(0.09) possibly_damaging(0.733) TCGA-QB-AA9O-06 15 25490704 25490704 C T SNORD115-41 RNA 0.21 TCGA-QB-AA9O-06 15 25584400 25584400 G A UBE3A Missense_Mutation p.P838S 0.20 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 15 30010915 30010915 G A TJP1 Missense_Mutation p.P1144L 0.47 deleterious_low_confidence(0.01) benign(0.119) TCGA-QB-AA9O-06 15 31294233 31294233 A T TRPM1 Missense_Mutation p.L1574Q 0.20 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-QB-AA9O-06 15 31362392 31362392 G A TRPM1 Missense_Mutation p.P58S 0.20 tolerated(0.4) benign(0.179) TCGA-QB-AA9O-06 15 39885260 39885260 G A THBS1 Missense_Mutation p.D943N 0.34 tolerated(0.3) possibly_damaging(0.654) TCGA-QB-AA9O-06 15 40589730 40589730 T A PLCB2 Nonsense_Mutation p.K439* 0.31 TCGA-QB-AA9O-06 15 40627456 40627458 GGG AA C15orf52 Frame_Shift_Del p.P503* 0.31 TCGA-QB-AA9O-06 15 42171961 42171961 G A SPTBN5 Silent p.I971I 0.44 TCGA-QB-AA9O-06 15 42284941 42284941 C T PLA2G4E Silent p.G488G 0.35 TCGA-QB-AA9O-06 15 42287602 42287602 G A PLA2G4E Silent p.L401L 0.22 TCGA-QB-AA9O-06 15 43317087 43317087 G A UBR1 Silent p.T893T 0.26 TCGA-QB-AA9O-06 15 43772090 43772090 A C TP53BP1 Missense_Mutation p.Y209D 0.17 tolerated(0.2) benign(0.091) TCGA-QB-AA9O-06 15 43816442 43816442 G A MAP1A Missense_Mutation p.R924K 0.58 benign(0.004) TCGA-QB-AA9O-06 15 43816932 43816932 C T MAP1A Silent p.T1087T 0.31 TCGA-QB-AA9O-06 15 43821466 43821466 G A MAP1A Missense_Mutation p.E2599K 0.15 probably_damaging(0.995) TCGA-QB-AA9O-06 15 43928003 43928003 C T CATSPER2 Missense_Mutation p.R348K 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-QB-AA9O-06 15 45392987 45392987 C T DUOX2 Missense_Mutation p.G991R 0.35 tolerated(0.56) benign(0.06) TCGA-QB-AA9O-06 15 48063473 48063473 C T SEMA6D Nonsense_Mutation p.Q905* 0.22 TCGA-QB-AA9O-06 15 48789564 48789564 G A FBN1 Missense_Mutation p.P731L 0.17 possibly_damaging(0.773) TCGA-QB-AA9O-06 15 49059642 49059642 C A CEP152 Missense_Mutation p.Q679H 0.48 tolerated(0.08) benign(0.031) TCGA-QB-AA9O-06 15 49126965 49126965 C T SHC4 Splice_Site p.X579_splice 0.46 TCGA-QB-AA9O-06 15 50273428 50273428 C T ATP8B4 Missense_Mutation p.R271K 0.15 tolerated(0.13) benign(0.022) TCGA-QB-AA9O-06 15 50544852 50544852 G A HDC Missense_Mutation p.P303S 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-QB-AA9O-06 15 51975563 51975563 C T SCG3 Missense_Mutation p.S110L 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-QB-AA9O-06 15 52497994 52497994 T G MYO5C Intron 0.19 TCGA-QB-AA9O-06 15 52510735 52510735 C T MYO5C Missense_Mutation p.R1312Q 0.20 tolerated(0.05) benign(0.002) TCGA-QB-AA9O-06 15 54306572 54306572 C T UNC13C Missense_Mutation p.S491F 0.61 deleterious_low_confidence(0) benign(0.094) TCGA-QB-AA9O-06 15 63908059 63908059 G A HERC1 Missense_Mutation p.P4668S 0.40 benign(0.43) TCGA-QB-AA9O-06 15 64543750 64543750 G A CSNK1G1 Missense_Mutation p.H85Y 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-QB-AA9O-06 15 65448054 65448054 G A CLPX Silent p.I429I 0.47 TCGA-QB-AA9O-06 15 65471343 65471343 G A CLPX Missense_Mutation p.S96F 0.17 tolerated(0.06) probably_damaging(0.991) TCGA-QB-AA9O-06 15 72432097 72432097 C T SENP8 Missense_Mutation p.H45Y 0.49 tolerated(0.08) benign(0.006) TCGA-QB-AA9O-06 15 74425108 74425108 C T ISLR2 Missense_Mutation p.R5W 0.15 tolerated(0.18) probably_damaging(0.973) TCGA-QB-AA9O-06 15 75042757 75042757 C T CYP1A2 Silent p.F226F 0.29 TCGA-QB-AA9O-06 15 75112980 75112980 C T LMAN1L Missense_Mutation p.P260L 0.23 deleterious(0.02) benign(0.014) TCGA-QB-AA9O-06 15 75216027 75216027 G A COX5A Missense_Mutation p.P142S 0.14 deleterious(0) possibly_damaging(0.824) TCGA-QB-AA9O-06 15 79339330 79339330 G A RASGRF1 Silent p.F212F 0.30 TCGA-QB-AA9O-06 15 81230198 81230198 T C KIAA1199 Silent p.D1095D 0.22 TCGA-QB-AA9O-06 15 81633854 81633854 C T TMC3 Missense_Mutation p.G574E 0.44 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 15 83820108 83820108 G A HDGFRP3 Silent p.S155S 0.23 TCGA-QB-AA9O-06 15 83932219 83932219 G A BNC1 Missense_Mutation p.S595L 0.23 tolerated(0.18) benign(0.002) TCGA-QB-AA9O-06 15 83935776 83935776 C T BNC1 Missense_Mutation p.E83K 0.40 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 15 83936937 83936937 C T BNC1 Silent p.G49G 0.26 TCGA-QB-AA9O-06 15 85326617 85326617 C T ZNF592 Silent p.F237F 0.29 TCGA-QB-AA9O-06 15 89074352 89074352 G A DET1 Silent p.I206I 0.11 TCGA-QB-AA9O-06 15 89400170 89400170 C T ACAN Missense_Mutation p.P1452S 0.43 tolerated(0.15) probably_damaging(0.999) TCGA-QB-AA9O-06 15 90188259 90188259 C T KIF7 Missense_Mutation p.E726K 0.21 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 15 90320423 90320423 C T MESP2 Missense_Mutation p.P279S 0.16 tolerated(0.53) benign(0.005) TCGA-QB-AA9O-06 15 91456203 91456203 C T MAN2A2 Missense_Mutation p.R856W 0.50 deleterious(0) possibly_damaging(0.832) TCGA-QB-AA9O-06 15 94899321 94899321 G A MCTP2 Intron 0.29 TCGA-QB-AA9O-06 15 95001411 95001411 G A MCTP2 Missense_Mutation p.D766N 0.29 tolerated(0.06) possibly_damaging(0.513) TCGA-QB-AA9O-06 15 97328463 97328463 A T SPATA8 3'UTR 0.72 TCGA-QB-AA9O-06 15 99903388 99903388 C T LRRC28 Missense_Mutation p.R317W 0.46 deleterious(0.03) possibly_damaging(0.614) TCGA-QB-AA9O-06 16 11348713 11348713 G A SOCS1 Missense_Mutation p.P208L 0.33 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 16 11650570 11650570 G A LITAF Missense_Mutation p.P6L 0.27 tolerated_low_confidence(0.09) benign(0.002) TCGA-QB-AA9O-06 16 1274622 1274622 G A TPSG1 Missense_Mutation p.S18F 0.35 tolerated(0.51) benign(0.04) TCGA-QB-AA9O-06 16 16276295 16276295 C T ABCC6 Missense_Mutation p.G741R 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-QB-AA9O-06 16 16295993 16295993 C T ABCC6 Nonsense_Mutation p.W347* 0.30 TCGA-QB-AA9O-06 16 1962127 1962127 G A HS3ST6 Missense_Mutation p.R134C 0.30 deleterious(0.04) probably_damaging(0.918) TCGA-QB-AA9O-06 16 20975356 20975356 C T DNAH3 Missense_Mutation p.E3284K 0.32 deleterious(0) possibly_damaging(0.902) TCGA-QB-AA9O-06 16 20975643 20975643 T C DNAH3 Missense_Mutation p.K3188R 0.16 deleterious(0.03) probably_damaging(0.914) TCGA-QB-AA9O-06 16 21060958 21060958 C T DNAH3 Missense_Mutation p.G1465R 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-QB-AA9O-06 16 2106223 2106223 C T TSC2 Missense_Mutation p.T209I 0.33 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 16 21698901 21698901 G A OTOA Silent p.G189G 0.44 TCGA-QB-AA9O-06 16 22337159 22337159 G A POLR3E Missense_Mutation p.E476K 0.39 tolerated(0.19) benign(0.04) TCGA-QB-AA9O-06 16 22926721 22926721 G A HS3ST2 Silent p.L314L 0.37 TCGA-QB-AA9O-06 16 22926962 22926962 C T HS3ST2 3'UTR 0.30 TCGA-QB-AA9O-06 16 23391819 23391819 T C SCNN1B Silent p.F540F 0.31 TCGA-QB-AA9O-06 16 23768852 23768852 C T CHP2 Missense_Mutation p.S180F 0.33 deleterious(0) probably_damaging(0.962) TCGA-QB-AA9O-06 16 23769008 23769008 C T CHP2 3'UTR 0.39 TCGA-QB-AA9O-06 16 24226051 24226051 G A PRKCB Missense_Mutation p.E646K 0.36 tolerated(0.79) benign(0.014) TCGA-QB-AA9O-06 16 24268231 24268231 G A CACNG3 Silent p.R52R 0.46 TCGA-QB-AA9O-06 16 24373039 24373039 C T CACNG3 Missense_Mutation p.S268F 0.27 deleterious(0) possibly_damaging(0.615) TCGA-QB-AA9O-06 16 24373040 24373040 C T CACNG3 Silent p.S268S 0.25 TCGA-QB-AA9O-06 16 24870075 24870075 C T SLC5A11 Silent p.L37L 0.45 TCGA-QB-AA9O-06 16 24919447 24919447 G A SLC5A11 Missense_Mutation p.E477K 0.28 deleterious(0.03) possibly_damaging(0.768) TCGA-QB-AA9O-06 16 25228321 25228321 C T AQP8 5'UTR 0.32 TCGA-QB-AA9O-06 16 2564092 2564092 C T ATP6V0C 5'UTR 0.53 TCGA-QB-AA9O-06 16 25704386 25704386 G A HS3ST4 Silent p.A216A 0.40 TCGA-QB-AA9O-06 16 26147255 26147255 C T HS3ST4 Missense_Mutation p.L353F 0.38 tolerated(0.17) probably_damaging(0.952) TCGA-QB-AA9O-06 16 28877428 28877428 C T SH2B1 Missense_Mutation p.P5S 0.56 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-QB-AA9O-06 16 29884917 29884917 G A SEZ6L2 Silent p.T746T 0.30 TCGA-QB-AA9O-06 16 30196707 30196707 C T CORO1A Silent p.F59F 0.43 TCGA-QB-AA9O-06 16 30486837 30486837 C T ITGAL Missense_Mutation p.S88F 0.41 tolerated(0.17) benign(0.013) TCGA-QB-AA9O-06 16 30735802 30735802 C T SRCAP Missense_Mutation p.A1686V 0.36 benign(0.259) TCGA-QB-AA9O-06 16 30774807 30774807 G A RNF40 Silent p.E123E 0.38 TCGA-QB-AA9O-06 16 31336837 31336837 G A ITGAM Missense_Mutation p.R842Q 0.24 tolerated(0.07) benign(0.064) TCGA-QB-AA9O-06 16 31484852 31484852 C T TGFB1I1 Missense_Mutation p.P35L 0.31 deleterious(0.01) possibly_damaging(0.737) TCGA-QB-AA9O-06 16 3298933 3298933 C T MEFV Silent p.G444G 0.11 TCGA-QB-AA9O-06 16 3543946 3543946 G A C16orf90 Nonsense_Mutation p.Q148* 0.31 TCGA-QB-AA9O-06 16 3582857 3582857 C T CLUAP1 Intron 0.40 TCGA-QB-AA9O-06 16 3900507 3900507 A T CREBBP Missense_Mutation p.L197I 0.31 possibly_damaging(0.573) TCGA-QB-AA9O-06 16 46615694 46615694 C A SHCBP1 Missense_Mutation p.G656W 0.10 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 16 4790337 4790337 C T C16orf71 Silent p.L154L 0.12 TCGA-QB-AA9O-06 16 48250034 48250034 G A ABCC11 Silent p.F314F 0.16 TCGA-QB-AA9O-06 16 5040775 5040775 C T SEC14L5 Missense_Mutation p.P118L 0.32 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 16 51171310 51171310 G A SALL1 Missense_Mutation p.P1230S 0.58 deleterious(0.04) possibly_damaging(0.834) TCGA-QB-AA9O-06 16 51174262 51174262 C T SALL1 Missense_Mutation p.S624N 0.20 tolerated(0.25) benign(0.042) TCGA-QB-AA9O-06 16 51175761 51175761 G A SALL1 Silent p.S124S 0.21 TCGA-QB-AA9O-06 16 5135638 5135638 G T FAM86A Missense_Mutation p.L330M 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QB-AA9O-06 16 53635975 53635975 G A RPGRIP1L 3'UTR 0.47 TCGA-QB-AA9O-06 16 53679563 53679563 G A RPGRIP1L Missense_Mutation p.S886L 0.20 deleterious(0.02) probably_damaging(0.941) TCGA-QB-AA9O-06 16 57059706 57059706 C T NLRC5 Missense_Mutation p.P284L 0.22 deleterious(0.03) possibly_damaging(0.819) TCGA-QB-AA9O-06 16 57113002 57113002 C T NLRC5 Silent p.L1708L 0.21 TCGA-QB-AA9O-06 16 57546529 57546529 G A CCDC102A 3'UTR 0.15 TCGA-QB-AA9O-06 16 57789045 57789045 C T KATNB1 Silent p.P437P 0.13 TCGA-QB-AA9O-06 16 57918293 57918293 C T CNGB1 Silent p.K1177K 0.36 TCGA-QB-AA9O-06 16 61687835 61687835 C T CDH8 Missense_Mutation p.G693R 0.38 tolerated(0.34) probably_damaging(1) TCGA-QB-AA9O-06 16 66943938 66943938 G A CDH16 Silent p.I742I 0.36 TCGA-QB-AA9O-06 16 66998597 66998597 G A CES3 Silent p.G262G 0.22 TCGA-QB-AA9O-06 16 67354699 67354699 G A KCTD19 Silent p.L31L 0.24 TCGA-QB-AA9O-06 16 67688345 67688345 G A RLTPR Missense_Mutation p.R1111Q 0.22 deleterious(0.03) probably_damaging(0.99) TCGA-QB-AA9O-06 16 67763299 67763299 G A RANBP10 Silent p.S412S 0.15 TCGA-QB-AA9O-06 16 68961616 68961616 C T TANGO6 Missense_Mutation p.A758V 0.23 tolerated(0.14) benign(0.15) TCGA-QB-AA9O-06 16 71007759 71007759 G A HYDIN Silent p.F1734F 0.16 TCGA-QB-AA9O-06 16 71602031 71602031 G A TAT 3'UTR 0.41 TCGA-QB-AA9O-06 16 71780609 71780609 G A AP1G1 Intron 0.48 TCGA-QB-AA9O-06 16 71807241 71807241 G A AP1G1 Silent p.F117F 0.17 TCGA-QB-AA9O-06 16 74372649 74372649 G A RP11-252A24.2 RNA 0.58 TCGA-QB-AA9O-06 16 74943437 74943437 G A WDR59 Missense_Mutation p.P535L 0.28 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 16 75149125 75149125 C T LDHD Missense_Mutation p.G100R 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 16 77393218 77393218 T C ADAMTS18 Missense_Mutation p.H440R 0.24 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 16 78064394 78064394 G A CLEC3A Missense_Mutation p.G93S 0.26 tolerated(0.69) benign(0.015) TCGA-QB-AA9O-06 16 81390571 81390571 C T GAN Missense_Mutation p.S272F 0.39 tolerated(0.18) possibly_damaging(0.629) TCGA-QB-AA9O-06 16 82131900 82131900 G A HSD17B2 Silent p.G341G 0.43 TCGA-QB-AA9O-06 16 82132082 82132082 G A HSD17B2 3'UTR 0.30 TCGA-QB-AA9O-06 16 84203808 84203808 G A DNAAF1 Silent p.E458E 0.17 TCGA-QB-AA9O-06 16 88691142 88691142 C T ZC3H18 Silent p.T677T 0.44 TCGA-QB-AA9O-06 16 88697533 88697533 C T ZC3H18 Silent p.S896S 0.44 TCGA-QB-AA9O-06 16 9857311 9857311 C T GRIN2A Missense_Mutation p.D1364N 0.32 deleterious(0.02) benign(0.031) TCGA-QB-AA9O-06 16 9858201 9858201 C T GRIN2A Missense_Mutation p.R1067Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 17 10298539 10298539 G A MYH8 Silent p.L1625L 0.44 TCGA-QB-AA9O-06 17 10363379 10363379 C T MYH4 Missense_Mutation p.E436K 0.45 deleterious(0) possibly_damaging(0.495) TCGA-QB-AA9O-06 17 10366440 10366440 G A MYH4 Nonsense_Mutation p.Q291* 0.11 TCGA-QB-AA9O-06 17 10399327 10399327 C T MYH1 Silent p.R1703R 0.44 TCGA-QB-AA9O-06 17 10401125 10401125 C T MYH1 Missense_Mutation p.D1431N 0.48 deleterious(0) probably_damaging(0.936) TCGA-QB-AA9O-06 17 10419996 10419996 C T MYH1 5'UTR 0.48 TCGA-QB-AA9O-06 17 10432721 10432721 C T MYH2 Silent p.L1065L 0.43 TCGA-QB-AA9O-06 17 10450876 10450876 G A MYH2 Silent p.I88I 0.41 TCGA-QB-AA9O-06 17 10451136 10451136 G A MYH2 Silent p.A34A 0.30 TCGA-QB-AA9O-06 17 11660936 11660936 C T DNAH9 Nonsense_Mutation p.Q2308* 0.24 TCGA-QB-AA9O-06 17 11833360 11833360 C T DNAH9 Missense_Mutation p.P4019S 0.38 probably_damaging(0.996) TCGA-QB-AA9O-06 17 1584037 1584037 G A PRPF8 Missense_Mutation p.H361Y 0.52 tolerated(0.72) benign(0.001) TCGA-QB-AA9O-06 17 18058690 18058690 G A MYO15A Silent p.R2801R 0.28 TCGA-QB-AA9O-06 17 18682560 18682560 G A FBXW10 Silent p.T1036T 0.50 TCGA-QB-AA9O-06 17 20224967 20224967 A G AC004702.2 Intron 0.21 TCGA-QB-AA9O-06 17 20805643 20805643 G A RP11-344E13.3 RNA 0.40 TCGA-QB-AA9O-06 17 26099432 26099432 G A NOS2 Nonsense_Mutation p.R536* 0.17 TCGA-QB-AA9O-06 17 26918805 26918805 G A SPAG5 Missense_Mutation p.R450C 0.39 tolerated(0.23) benign(0.014) TCGA-QB-AA9O-06 17 27001616 27001616 C T SUPT6H Silent p.V110V 0.33 TCGA-QB-AA9O-06 17 27187607 27187607 C T ERAL1 3'UTR 0.18 TCGA-QB-AA9O-06 17 3119814 3119814 G A OR1A1 Silent p.R300R 0.25 TCGA-QB-AA9O-06 17 31266527 31266527 C T TMEM98 Missense_Mutation p.P149L 0.17 deleterious(0.01) unknown(0) TCGA-QB-AA9O-06 17 3324347 3324347 C T OR3A3 Silent p.F162F 0.16 TCGA-QB-AA9O-06 17 33456644 33456644 A C FNDC8 Silent p.T263T 0.53 TCGA-QB-AA9O-06 17 33482323 33482323 G A UNC45B Silent p.V216V 0.50 TCGA-QB-AA9O-06 17 33497256 33497256 C T UNC45B Silent p.A557A 0.17 TCGA-QB-AA9O-06 17 34077315 34077315 C T GAS2L2 Silent p.E136E 0.54 TCGA-QB-AA9O-06 17 35311156 35311156 C T AATF Missense_Mutation p.P261S 0.54 tolerated(0.14) benign(0.262) TCGA-QB-AA9O-06 17 36486411 36486411 C T GPR179 Missense_Mutation p.G1014E 0.19 tolerated(0.22) benign(0.172) TCGA-QB-AA9O-06 17 3649216 3649216 G A ITGAE Missense_Mutation p.R721C 0.59 deleterious(0.04) probably_damaging(0.939) TCGA-QB-AA9O-06 17 37627465 37627465 T A CDK12 Silent p.T460T 0.23 TCGA-QB-AA9O-06 17 38928008 38928008 C T KRT26 Missense_Mutation p.E120K 0.29 tolerated(0.07) benign(0.015) TCGA-QB-AA9O-06 17 38954625 38954625 G A KRT28 Silent p.T184T 0.16 TCGA-QB-AA9O-06 17 39406426 39406426 T A KRTAP9-4 Missense_Mutation p.F152I 0.42 tolerated(0.48) benign(0.295) TCGA-QB-AA9O-06 17 39521805 39521805 C T KRT33B Missense_Mutation p.E197K 0.32 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 17 39535379 39535379 G A KRT34 Missense_Mutation p.S351F 0.51 deleterious(0) benign(0.099) TCGA-QB-AA9O-06 17 39637134 39637134 G A KRT35 Silent p.L72L 0.44 TCGA-QB-AA9O-06 17 40179027 40179027 G A NKIRAS2 3'Flank 0.23 TCGA-QB-AA9O-06 17 40271688 40271688 C T KAT2A Missense_Mutation p.E250K 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-QB-AA9O-06 17 41061424 41061424 G A G6PC Missense_Mutation p.G184E 0.39 deleterious(0) probably_damaging(0.948) TCGA-QB-AA9O-06 17 42289242 42289242 G A UBTF Missense_Mutation p.P302S 0.13 tolerated(0.28) possibly_damaging(0.859) TCGA-QB-AA9O-06 17 42335952 42335952 C T SLC4A1 Missense_Mutation p.E306K 0.21 deleterious(0) possibly_damaging(0.757) TCGA-QB-AA9O-06 17 42828309 42828309 C T DBF4B Silent p.P512P 0.21 TCGA-QB-AA9O-06 17 42945705 42945705 G A EFTUD2 Silent p.Y336Y 0.42 TCGA-QB-AA9O-06 17 42949843 42949843 G A EFTUD2 Missense_Mutation p.S322F 0.46 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 17 43480165 43480165 G A ARHGAP27 Missense_Mutation p.S212F 0.48 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 17 4448930 4448930 G A MYBBP1A Missense_Mutation p.P683L 0.12 tolerated(0.17) benign(0.03) TCGA-QB-AA9O-06 17 45104932 45104932 C T RP11-156P1.3 Intron 0.34 TCGA-QB-AA9O-06 17 45568410 45568410 G A MRPL45P2 RNA 0.36 TCGA-QB-AA9O-06 17 4619304 4619304 C T ARRB2 Missense_Mutation p.H31Y 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-QB-AA9O-06 17 46692013 46692013 G A HOXB8 Silent p.S18S 0.43 TCGA-QB-AA9O-06 17 47299959 47299959 C T ABI3 Missense_Mutation p.S328F 0.20 deleterious(0) possibly_damaging(0.788) TCGA-QB-AA9O-06 17 48450594 48450594 C T EME1 5'UTR 0.50 TCGA-QB-AA9O-06 17 48557331 48557331 C T RSAD1 Silent p.A120A 0.27 TCGA-QB-AA9O-06 17 48917245 48917245 C T WFIKKN2 Missense_Mutation p.S199F 0.53 tolerated(0.07) benign(0.019) TCGA-QB-AA9O-06 17 49270197 49270197 G A MBTD1 Missense_Mutation p.P546S 0.18 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 17 5037205 5037205 G A USP6 Silent p.R136R 0.19 TCGA-QB-AA9O-06 17 5042823 5042823 G A USP6 Nonsense_Mutation p.W451* 0.26 TCGA-QB-AA9O-06 17 51900757 51900757 G A KIF2B Silent p.Q121Q 0.12 TCGA-QB-AA9O-06 17 51901109 51901109 C T KIF2B Missense_Mutation p.P239S 0.21 deleterious(0.02) probably_damaging(0.95) TCGA-QB-AA9O-06 17 51901779 51901779 G A KIF2B Missense_Mutation p.R462Q 0.13 deleterious(0.02) probably_damaging(0.912) TCGA-QB-AA9O-06 17 54535224 54535224 C T ANKFN1 Silent p.L484L 0.39 TCGA-QB-AA9O-06 17 54543771 54543771 C T ANKFN1 Nonsense_Mutation p.R541* 0.19 TCGA-QB-AA9O-06 17 5462457 5462457 G A NLRP1 Missense_Mutation p.P520L 0.48 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 17 54912165 54912165 G A DGKE Silent p.A3A 0.24 TCGA-QB-AA9O-06 17 56232787 56232787 G A OR4D1 Silent p.T91T 0.35 TCGA-QB-AA9O-06 17 56276410 56276410 G A EPX Missense_Mutation p.R377Q 0.18 deleterious(0) possibly_damaging(0.578) TCGA-QB-AA9O-06 17 56572419 56572419 G A MTMR4 Silent p.I1028I 0.27 TCGA-QB-AA9O-06 17 58734155 58734155 G T PPM1D Nonsense_Mutation p.E405* 0.20 TCGA-QB-AA9O-06 17 59147416 59147416 G A BCAS3 Intron 0.14 TCGA-QB-AA9O-06 17 59147417 59147417 G A BCAS3 Intron 0.13 TCGA-QB-AA9O-06 17 59560546 59560546 C T TBX4 Missense_Mutation p.T436I 0.21 tolerated(0.06) possibly_damaging(0.859) TCGA-QB-AA9O-06 17 59668532 59668532 C T NACA2 Missense_Mutation p.E4K 0.19 tolerated(0.06) possibly_damaging(0.905) TCGA-QB-AA9O-06 17 60072656 60072656 G A MED13 Nonsense_Mutation p.Q680* 0.56 TCGA-QB-AA9O-06 17 60348317 60348317 A C TBC1D3P2 Intron 0.12 TCGA-QB-AA9O-06 17 61428704 61428704 C T TANC2 Missense_Mutation p.S560L 0.50 deleterious(0) possibly_damaging(0.557) TCGA-QB-AA9O-06 17 61561322 61561322 G C ACE Missense_Mutation p.A567P 0.27 tolerated(0.07) possibly_damaging(0.619) TCGA-QB-AA9O-06 17 61607719 61607719 G A KCNH6 Missense_Mutation p.G164D 0.57 deleterious(0.04) benign(0.197) TCGA-QB-AA9O-06 17 63189683 63189683 T C RGS9 Missense_Mutation p.F257L 0.12 tolerated(0.06) benign(0.181) TCGA-QB-AA9O-06 17 63554147 63554147 C T AXIN2 Missense_Mutation p.E198K 0.41 deleterious(0) possibly_damaging(0.602) TCGA-QB-AA9O-06 17 6483013 6483013 G A KIAA0753 3'UTR 0.35 TCGA-QB-AA9O-06 17 65972035 65972035 C T BPTF Missense_Mutation p.S2896L 0.39 probably_damaging(0.971) TCGA-QB-AA9O-06 17 67270210 67270210 G A ABCA5 Missense_Mutation p.S885F 0.20 tolerated(0.33) benign(0.365) TCGA-QB-AA9O-06 17 68129423 68129423 G A KCNJ16 Missense_Mutation p.E399K 0.17 tolerated_low_confidence(0.07) benign(0.001) TCGA-QB-AA9O-06 17 68172339 68172339 G A KCNJ2 Missense_Mutation p.E387K 0.46 tolerated(0.19) benign(0.1) TCGA-QB-AA9O-06 17 6930105 6930105 C T BCL6B Missense_Mutation p.S379L 0.40 deleterious(0) benign(0.027) TCGA-QB-AA9O-06 17 7096826 7096826 C A DLG4 Missense_Mutation p.D600Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 17 71357971 71357971 G A SDK2 Silent p.I1773I 0.45 TCGA-QB-AA9O-06 17 71427710 71427710 C T SDK2 Missense_Mutation p.G471R 0.26 deleterious(0) probably_damaging(0.993) TCGA-QB-AA9O-06 17 72249964 72249964 C T TTYH2 Missense_Mutation p.P506S 0.47 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 17 72297196 72297196 G A DNAI2 Nonsense_Mutation p.W292* 0.26 TCGA-QB-AA9O-06 17 72305585 72305585 G A DNAI2 Intron 0.15 TCGA-QB-AA9O-06 17 73124936 73124936 C T ARMC7 Missense_Mutation p.P134S 0.23 tolerated(0.56) benign(0.003) TCGA-QB-AA9O-06 17 73124937 73124937 C T ARMC7 Missense_Mutation p.P134L 0.25 tolerated(0.2) benign(0.071) TCGA-QB-AA9O-06 17 7330364 7330364 C T C17orf74 Silent p.L352L 0.30 TCGA-QB-AA9O-06 17 7366390 7366390 C T ZBTB4 Silent p.E637E 0.25 TCGA-QB-AA9O-06 17 73732173 73732173 G A ITGB4 Missense_Mutation p.G567S 0.38 deleterious(0) possibly_damaging(0.897) TCGA-QB-AA9O-06 17 73775164 73775164 G A H3F3B Missense_Mutation p.P31L 0.41 deleterious_low_confidence(0.02) benign(0.076) TCGA-QB-AA9O-06 17 74004630 74004630 G A EVPL Silent p.A1552A 0.54 TCGA-QB-AA9O-06 17 74679983 74679983 G A MXRA7 Intron 0.19 TCGA-QB-AA9O-06 17 76449429 76449429 C T DNAH17 Missense_Mutation p.G3495R 0.38 possibly_damaging(0.615) TCGA-QB-AA9O-06 17 76481002 76481002 C T DNAH17 Missense_Mutation p.G2519R 0.47 probably_damaging(0.962) TCGA-QB-AA9O-06 17 7700566 7700566 C T DNAH2 Missense_Mutation p.H2646Y 0.31 probably_damaging(1) TCGA-QB-AA9O-06 17 7826466 7826466 A G KCNAB3 Missense_Mutation p.M390T 0.18 tolerated(0.56) benign(0) TCGA-QB-AA9O-06 17 7839761 7839761 C T CNTROB Silent p.A224A 0.16 TCGA-QB-AA9O-06 17 7979035 7979035 C T ALOX12B Splice_Site p.X511_splice 0.19 TCGA-QB-AA9O-06 17 8053969 8053969 G A PER1 Missense_Mutation p.S19L 0.16 deleterious_low_confidence(0.03) benign(0.031) TCGA-QB-AA9O-06 17 8171879 8171879 C T PFAS Silent p.P1137P 0.22 TCGA-QB-AA9O-06 17 8222421 8222421 C T ARHGEF15 Silent p.S710S 0.43 TCGA-QB-AA9O-06 18 10671670 10671670 C T PIEZO2 Missense_Mutation p.D2705N 0.34 deleterious(0) possibly_damaging(0.67) TCGA-QB-AA9O-06 18 10691271 10691271 T C PIEZO2 Missense_Mutation p.N2321S 0.23 deleterious(0) benign(0.052) TCGA-QB-AA9O-06 18 10696489 10696489 G A PIEZO2 Silent p.I2179I 0.30 TCGA-QB-AA9O-06 18 12948141 12948141 C T SEH1L Silent p.I7I 0.38 TCGA-QB-AA9O-06 18 13826635 13826635 G A MC5R Missense_Mutation p.D291N 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-QB-AA9O-06 18 14791399 14791399 G A ANKRD30B Splice_Site p.X579_splice 0.22 TCGA-QB-AA9O-06 18 25573521 25573521 C T CDH2 Silent p.T367T 0.17 TCGA-QB-AA9O-06 18 28659813 28659813 C T DSC2 Missense_Mutation p.G555R 0.15 tolerated(0.12) benign(0.058) TCGA-QB-AA9O-06 18 28666569 28666569 G A DSC2 Silent p.I304I 0.26 TCGA-QB-AA9O-06 18 28710554 28710554 C T DSC1 Missense_Mutation p.E870K 0.19 deleterious(0) possibly_damaging(0.656) TCGA-QB-AA9O-06 18 28911801 28911801 C T DSG1 Nonsense_Mutation p.R219* 0.32 TCGA-QB-AA9O-06 18 28934450 28934450 G A DSG1 Missense_Mutation p.G764E 0.15 deleterious(0.02) probably_damaging(1) TCGA-QB-AA9O-06 18 28935212 28935212 C T DSG1 Missense_Mutation p.S1018F 0.38 deleterious(0) possibly_damaging(0.831) TCGA-QB-AA9O-06 18 28971063 28971063 T C DSG4 Missense_Mutation p.V236A 0.18 deleterious(0) benign(0.375) TCGA-QB-AA9O-06 18 28993527 28993527 G A DSG4 Missense_Mutation p.R1050Q 0.18 tolerated(0.34) benign(0.016) TCGA-QB-AA9O-06 18 29038467 29038467 C T DSG3 Silent p.I92I 0.36 TCGA-QB-AA9O-06 18 29848023 29848023 C T GAREM Silent p.E814E 0.16 TCGA-QB-AA9O-06 18 29868073 29868073 G A GAREM Missense_Mutation p.L163F 0.17 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 18 30091986 30091986 G A WBP11P1 RNA 0.21 TCGA-QB-AA9O-06 18 30795606 30795606 C T CCDC178 Missense_Mutation p.M662I 0.10 tolerated(0.89) benign(0) TCGA-QB-AA9O-06 18 30803106 30803106 C T CCDC178 Silent p.K632K 0.16 TCGA-QB-AA9O-06 18 30926233 30926233 C T CCDC178 Missense_Mutation p.M200I 0.15 deleterious(0.03) benign(0.023) TCGA-QB-AA9O-06 18 31323920 31323920 C T ASXL3 Missense_Mutation p.P1370S 0.26 benign(0.006) TCGA-QB-AA9O-06 18 44268821 44268821 G A ST8SIA5 Missense_Mutation p.P125S 0.43 probably_damaging(0.941) TCGA-QB-AA9O-06 18 44579417 44579417 G A KATNAL2 Missense_Mutation p.A25T 0.25 tolerated(0.4) benign(0.009) TCGA-QB-AA9O-06 18 47511163 47511163 C T MYO5B Missense_Mutation p.G291R 0.19 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 18 48325568 48325568 G A MRO 3'UTR 0.79 TCGA-QB-AA9O-06 18 51052998 51052998 C T DCC Missense_Mutation p.P1375S 0.40 tolerated(0.24) benign(0.014) TCGA-QB-AA9O-06 18 56171198 56171198 T A ALPK2 Missense_Mutation p.K2071I 0.22 deleterious(0) probably_damaging(0.991) TCGA-QB-AA9O-06 18 56202365 56202365 C T ALPK2 Missense_Mutation p.R1685K 0.15 tolerated(0.25) benign(0.147) TCGA-QB-AA9O-06 18 56586982 56586982 G A ZNF532 Missense_Mutation p.S488N 0.38 tolerated(0.12) probably_damaging(0.985) TCGA-QB-AA9O-06 18 56823024 56823024 T C SEC11C Missense_Mutation p.V151A 0.37 deleterious(0) benign(0.133) TCGA-QB-AA9O-06 18 580544 580544 G A CETN1 Missense_Mutation p.G46R 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-QB-AA9O-06 18 59212358 59212358 T G CDH20 Missense_Mutation p.F543L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-QB-AA9O-06 18 59925865 59925865 C T KIAA1468 Missense_Mutation p.H720Y 0.43 deleterious(0.02) possibly_damaging(0.843) TCGA-QB-AA9O-06 18 61308176 61308176 G A SERPINB4 Missense_Mutation p.T134I 0.44 deleterious(0.03) benign(0.005) TCGA-QB-AA9O-06 18 61328470 61328470 G A SERPINB3 5'UTR 0.44 TCGA-QB-AA9O-06 18 61377501 61377501 G A SERPINB11 Missense_Mutation p.G25E 0.47 tolerated(0.24) benign(0.046) TCGA-QB-AA9O-06 18 61471630 61471630 G A SERPINB7 Missense_Mutation p.E302K 0.26 tolerated(0.31) possibly_damaging(0.795) TCGA-QB-AA9O-06 18 6241440 6241440 T A L3MBTL4 Nonsense_Mutation p.K157* 0.41 TCGA-QB-AA9O-06 18 6876147 6876147 G A ARHGAP28 Silent p.E251E 0.35 TCGA-QB-AA9O-06 18 6898475 6898475 G A ARHGAP28 Intron 0.37 TCGA-QB-AA9O-06 18 76754310 76754310 G A SALL3 Silent p.E773E 0.19 TCGA-QB-AA9O-06 18 909480 909480 G A ADCYAP1 Silent p.A125A 0.42 TCGA-QB-AA9O-06 19 10165979 10165979 G A C3P1 RNA 0.21 TCGA-QB-AA9O-06 19 110666 110666 A C OR4F17 5'UTR 0.05 TCGA-QB-AA9O-06 19 12864158 12864158 C T BEST2 Silent p.S79S 0.27 TCGA-QB-AA9O-06 19 12865843 12865843 G A BEST2 Missense_Mutation p.E212K 0.43 deleterious(0.05) benign(0.107) TCGA-QB-AA9O-06 19 13223766 13223766 G A TRMT1 Missense_Mutation p.P234L 0.18 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 19 13325142 13325142 C T CACNA1A Missense_Mutation p.D1949N 0.34 possibly_damaging(0.728) TCGA-QB-AA9O-06 19 13476158 13476158 G A CACNA1A Missense_Mutation p.H253Y 0.45 possibly_damaging(0.607) TCGA-QB-AA9O-06 19 1391044 1391044 C T NDUFS7 Missense_Mutation p.R135C 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-QB-AA9O-06 19 14000415 14000415 G A C19orf57 Silent p.S418S 0.27 TCGA-QB-AA9O-06 19 14030675 14030675 C T CC2D1A Nonsense_Mutation p.Q423* 0.25 TCGA-QB-AA9O-06 19 15133734 15133734 G A CCDC105 Missense_Mutation p.E435K 0.30 tolerated(0.58) benign(0.012) TCGA-QB-AA9O-06 19 15166332 15166332 A G CASP14 Silent p.E204E 0.13 TCGA-QB-AA9O-06 19 15587234 15587234 G A PGLYRP2 Missense_Mutation p.P83S 0.39 tolerated(0.27) benign(0.354) TCGA-QB-AA9O-06 19 15648451 15648451 A G CYP4F22 Missense_Mutation p.N176S 0.22 tolerated(0.3) probably_damaging(0.995) TCGA-QB-AA9O-06 19 15733971 15733971 G A CYP4F8 RNA 0.38 TCGA-QB-AA9O-06 19 15794388 15794388 T A CYP4F12 Missense_Mutation p.F245I 0.27 tolerated(0.11) benign(0.082) TCGA-QB-AA9O-06 19 15839391 15839391 C T OR10H2 Missense_Mutation p.H180Y 0.45 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 19 15905162 15905162 T C OR10H5 Missense_Mutation p.F102L 0.34 deleterious(0.02) possibly_damaging(0.611) TCGA-QB-AA9O-06 19 15918675 15918675 G A OR10H1 Missense_Mutation p.P58L 0.37 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 19 16003355 16003355 G A CYP4F2 Silent p.F127F 0.29 TCGA-QB-AA9O-06 19 16008355 16008355 G A CYP4F2 Silent p.L23L 0.16 TCGA-QB-AA9O-06 19 16345282 16345282 C T AP1M1 3'UTR 0.52 TCGA-QB-AA9O-06 19 16634081 16634081 G A CHERP Missense_Mutation p.H588Y 0.20 deleterious_low_confidence(0.03) benign(0.295) TCGA-QB-AA9O-06 19 16980527 16980527 C T SIN3B Missense_Mutation p.P720L 0.20 tolerated(0.19) benign(0.001) TCGA-QB-AA9O-06 19 17057892 17057892 T C CPAMD8 Missense_Mutation p.N932S 0.27 deleterious(0.01) possibly_damaging(0.889) TCGA-QB-AA9O-06 19 17086014 17086014 C T CPAMD8 Missense_Mutation p.E702K 0.38 tolerated(0.1) possibly_damaging(0.462) TCGA-QB-AA9O-06 19 17120131 17120131 C T CPAMD8 Splice_Site p.X210_splice 0.35 TCGA-QB-AA9O-06 19 17476265 17476265 G A PLVAP Nonsense_Mutation p.Q337* 0.22 TCGA-QB-AA9O-06 19 17732642 17732642 T A UNC13A Missense_Mutation p.K1414M 0.17 tolerated(0.16) benign(0.339) TCGA-QB-AA9O-06 19 18860647 18860647 C T CRTC1 Missense_Mutation p.S183F 0.28 deleterious(0.02) possibly_damaging(0.674) TCGA-QB-AA9O-06 19 18897092 18897092 C T COMP Missense_Mutation p.D422N 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-QB-AA9O-06 19 19105108 19105108 G A SUGP2 3'UTR 0.31 TCGA-QB-AA9O-06 19 19329836 19329836 C T NCAN Silent p.T62T 0.38 TCGA-QB-AA9O-06 19 19627027 19627027 G A NDUFA13 5'UTR 0.48 TCGA-QB-AA9O-06 19 19760748 19760748 G A ATP13A1 Silent p.G779G 0.28 TCGA-QB-AA9O-06 19 2078294 2078294 G A MOB3A Missense_Mutation p.P89L 0.16 deleterious(0) probably_damaging(0.914) TCGA-QB-AA9O-06 19 21300280 21300280 C T ZNF714 Silent p.A270A 0.35 TCGA-QB-AA9O-06 19 21476846 21476846 A G ZNF708 Missense_Mutation p.Y308H 0.25 deleterious(0.02) possibly_damaging(0.561) TCGA-QB-AA9O-06 19 22157058 22157058 C T ZNF208 Missense_Mutation p.E260K 0.21 tolerated(0.54) benign(0.212) TCGA-QB-AA9O-06 19 2243473 2243473 C T SF3A2 Missense_Mutation p.S19F 0.50 tolerated_low_confidence(0.28) benign(0.032) TCGA-QB-AA9O-06 19 22939471 22939471 G A ZNF99 3'Flank 0.32 TCGA-QB-AA9O-06 19 22941073 22941073 A C ZNF99 Missense_Mutation p.F546L 0.28 deleterious(0.01) possibly_damaging(0.612) TCGA-QB-AA9O-06 19 24310464 24310464 C T ZNF254 Silent p.A554A 0.35 TCGA-QB-AA9O-06 19 2991940 2991940 G A TLE6 Silent p.Q448Q 0.53 TCGA-QB-AA9O-06 19 30314635 30314635 C T CCNE1 Missense_Mutation p.T395I 0.39 deleterious(0) probably_damaging(0.921) TCGA-QB-AA9O-06 19 31039167 31039167 C T ZNF536 Missense_Mutation p.P881S 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-QB-AA9O-06 19 31768422 31768422 C T TSHZ3 Silent p.E759E 0.14 TCGA-QB-AA9O-06 19 31770556 31770556 G A TSHZ3 Missense_Mutation p.P48L 0.21 tolerated(0.43) possibly_damaging(0.75) TCGA-QB-AA9O-06 19 34706093 34706093 C T LSM14A Silent p.T201T 0.23 TCGA-QB-AA9O-06 19 36245348 36245348 C T LIN37 Silent p.I238I 0.33 TCGA-QB-AA9O-06 19 36616652 36616652 C T TBCB Missense_Mutation p.P235S 0.33 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 19 36616653 36616653 C T TBCB Missense_Mutation p.P235L 0.33 deleterious(0) probably_damaging(0.96) TCGA-QB-AA9O-06 19 37642745 37642745 C T ZNF585A Missense_Mutation p.G631R 0.34 deleterious(0.05) probably_damaging(1) TCGA-QB-AA9O-06 19 37643915 37643915 T G ZNF585A Missense_Mutation p.K241Q 0.41 deleterious(0) possibly_damaging(0.543) TCGA-QB-AA9O-06 19 38713234 38713234 G A DPF1 Silent p.A75A 0.42 TCGA-QB-AA9O-06 19 38800158 38800158 G A YIF1B Missense_Mutation p.P62S 0.21 deleterious(0.01) benign(0.004) TCGA-QB-AA9O-06 19 39336596 39336596 G A HNRNPL Missense_Mutation p.S174F 0.40 deleterious(0) possibly_damaging(0.876) TCGA-QB-AA9O-06 19 39589729 39589729 C T PAPL Missense_Mutation p.P151L 0.19 deleterious(0.01) probably_damaging(0.94) TCGA-QB-AA9O-06 19 40408731 40408731 G A FCGBP Missense_Mutation p.L1370F 0.32 probably_damaging(1) TCGA-QB-AA9O-06 19 40540476 40540476 G A ZNF780B Missense_Mutation p.R764C 0.16 tolerated(0.26) benign(0.084) TCGA-QB-AA9O-06 19 40724046 40724046 G C TTC9B Missense_Mutation p.F81L 0.23 tolerated(0.18) possibly_damaging(0.899) TCGA-QB-AA9O-06 19 4117551 4117551 A G MAP2K2 Missense_Mutation p.F57L 0.50 tolerated(0.06) probably_damaging(0.928) TCGA-QB-AA9O-06 19 41381488 41381488 C T CYP2A7 3'UTR 0.17 TCGA-QB-AA9O-06 19 41594391 41594391 G A CYP2A13 Silent p.G5G 0.53 TCGA-QB-AA9O-06 19 41630779 41630779 G A CYP2F1 Missense_Mutation p.D374N 0.24 deleterious(0.04) possibly_damaging(0.748) TCGA-QB-AA9O-06 19 42132257 42132257 C T CEACAM4 Missense_Mutation p.G48R 0.38 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 19 43688966 43688966 C T PSG5 Missense_Mutation p.G133E 0.32 tolerated(1) benign(0.158) TCGA-QB-AA9O-06 19 43762578 43762578 G A PSG9 Missense_Mutation p.S340L 0.12 deleterious(0) benign(0.34) TCGA-QB-AA9O-06 19 44222950 44222950 G A IRGC Silent p.E80E 0.20 TCGA-QB-AA9O-06 19 44222952 44222952 A T IRGC Missense_Mutation p.D81V 0.18 deleterious(0) probably_damaging(0.97) TCGA-QB-AA9O-06 19 44470518 44470518 G A ZNF221 Silent p.G288G 0.29 TCGA-QB-AA9O-06 19 44635827 44635827 A G ZNF225 Missense_Mutation p.I354V 0.36 tolerated(0.5) benign(0.206) TCGA-QB-AA9O-06 19 44891349 44891349 A C ZNF285 Missense_Mutation p.F353C 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-QB-AA9O-06 19 44934644 44934644 G A ZNF229 Silent p.S104S 0.20 TCGA-QB-AA9O-06 19 4513504 4513504 C T PLIN4 Silent p.G142G 0.17 TCGA-QB-AA9O-06 19 4529282 4529282 C T PLIN5 Intron 0.45 TCGA-QB-AA9O-06 19 45818846 45818846 C T CKM Missense_Mutation p.D120N 0.34 tolerated(0.24) benign(0.009) TCGA-QB-AA9O-06 19 46283646 46283646 G A DMPK 5'UTR 0.44 TCGA-QB-AA9O-06 19 47969320 47969320 C T SLC8A2 Missense_Mutation p.G114D 0.41 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 19 48220214 48220214 C T EHD2 Silent p.V115V 0.21 TCGA-QB-AA9O-06 19 48806049 48806049 T G CCDC114 Missense_Mutation p.K344T 0.33 tolerated(0.55) benign(0.002) TCGA-QB-AA9O-06 19 4902701 4902701 C T ARRDC5 Missense_Mutation p.G60E 0.20 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 19 50183143 50183143 C T PRMT1 Silent p.T17T 0.26 TCGA-QB-AA9O-06 19 50208005 50208005 C T CPT1C Silent p.S244S 0.36 TCGA-QB-AA9O-06 19 50412087 50412087 G A NUP62 Silent p.S326S 0.20 TCGA-QB-AA9O-06 19 51190035 51190035 C T SHANK1 Missense_Mutation p.M808I 0.25 benign(0.107) TCGA-QB-AA9O-06 19 51274749 51274749 C T GPR32 Missense_Mutation p.L298F 0.41 tolerated(0.08) possibly_damaging(0.688) TCGA-QB-AA9O-06 19 51298186 51298186 C T ACPT Missense_Mutation p.S377F 0.40 deleterious(0) benign(0.061) TCGA-QB-AA9O-06 19 51327045 51327045 G A KLK15 3'Flank 0.41 TCGA-QB-AA9O-06 19 51410137 51410137 C T KLK4 3'UTR 0.27 TCGA-QB-AA9O-06 19 51480689 51480689 C T KLK7 3'UTR 0.44 TCGA-QB-AA9O-06 19 51645661 51645661 G A SIGLEC7 Missense_Mutation p.G12E 0.19 tolerated(0.09) probably_damaging(0.983) TCGA-QB-AA9O-06 19 52130495 52130495 G A SIGLEC5 Missense_Mutation p.S430L 0.27 tolerated(0.19) benign(0.001) TCGA-QB-AA9O-06 19 52131304 52131304 C T SIGLEC5 Silent p.L260L 0.23 TCGA-QB-AA9O-06 19 52132675 52132675 G A SIGLEC5 Silent p.T212T 0.36 TCGA-QB-AA9O-06 19 52146491 52146491 G A SIGLEC14 3'UTR 0.77 TCGA-QB-AA9O-06 19 52272174 52272174 G A FPR2 Missense_Mutation p.G88E 0.31 tolerated(0.54) benign(0.03) TCGA-QB-AA9O-06 19 53453762 53453762 C T ZNF816 Silent p.E422E 0.21 TCGA-QB-AA9O-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.27 TCGA-QB-AA9O-06 19 53793189 53793189 C T BIRC8 Missense_Mutation p.E147K 0.30 deleterious(0.02) benign(0.285) TCGA-QB-AA9O-06 19 53959966 53959966 C T ZNF761 RNA 0.23 TCGA-QB-AA9O-06 19 54395856 54395856 C T PRKCG Silent p.S260S 0.33 TCGA-QB-AA9O-06 19 54418644 54418644 C T CACNG7 Silent p.F103F 0.37 TCGA-QB-AA9O-06 19 547315 547315 G A GZMM Missense_Mutation p.E31K 0.31 deleterious(0.01) probably_damaging(0.936) TCGA-QB-AA9O-06 19 54760001 54760001 G A LILRB5 Missense_Mutation p.P187L 0.32 deleterious(0.02) possibly_damaging(0.468) TCGA-QB-AA9O-06 19 54760002 54760002 G A LILRB5 Missense_Mutation p.P187S 0.32 tolerated(0.06) benign(0.31) TCGA-QB-AA9O-06 19 54780152 54780152 G A LILRB2 Silent p.S521S 0.41 TCGA-QB-AA9O-06 19 54783324 54783324 G A LILRB2 Silent p.R178R 0.45 TCGA-QB-AA9O-06 19 54802139 54802139 C T LILRA3 Missense_Mutation p.G350E 0.27 tolerated(0.36) benign(0.013) TCGA-QB-AA9O-06 19 54848900 54848900 G A LILRA4 Silent p.T241T 0.18 TCGA-QB-AA9O-06 19 55086898 55086898 G A LILRA2 Silent p.Q277Q 0.30 TCGA-QB-AA9O-06 19 55247467 55247467 G A KIR3DL3 Silent p.V379V 0.64 TCGA-QB-AA9O-06 19 55264085 55264085 G A KIR2DL3 3'UTR 0.75 TCGA-QB-AA9O-06 19 55331364 55331364 C T KIR3DL1 Silent p.P184P 0.37 TCGA-QB-AA9O-06 19 55444990 55444990 C T NLRP7 Silent p.V863V 0.39 TCGA-QB-AA9O-06 19 55494773 55494773 G A NLRP2 Silent p.L569L 0.35 TCGA-QB-AA9O-06 19 55687229 55687229 G A SYT5 Silent p.L130L 0.50 TCGA-QB-AA9O-06 19 56321418 56321418 G A NLRP11 Silent p.L186L 0.32 TCGA-QB-AA9O-06 19 56466036 56466036 G A NLRP8 Silent p.K204K 0.38 TCGA-QB-AA9O-06 19 56515323 56515323 G A NLRP5 Missense_Mutation p.E102K 0.44 tolerated(0.38) benign(0.008) TCGA-QB-AA9O-06 19 56538737 56538737 G A NLRP5 Missense_Mutation p.D380N 0.17 tolerated(0.29) benign(0.21) TCGA-QB-AA9O-06 19 56539537 56539537 G A NLRP5 Silent p.R646R 0.33 TCGA-QB-AA9O-06 19 56935436 56935436 G A ZNF583 Missense_Mutation p.R470K 0.12 deleterious(0.01) possibly_damaging(0.589) TCGA-QB-AA9O-06 19 57176594 57176594 C T ZNF835 5'UTR 0.39 TCGA-QB-AA9O-06 19 57326788 57326788 G A PEG3 Missense_Mutation p.R1008C 0.29 tolerated(0.28) benign(0.008) TCGA-QB-AA9O-06 19 57333072 57333072 C T PEG3 Missense_Mutation p.E206K 0.33 tolerated(0.86) benign(0.079) TCGA-QB-AA9O-06 19 57640145 57640145 G A USP29 Silent p.K34K 0.09 TCGA-QB-AA9O-06 19 57641588 57641588 C G USP29 Missense_Mutation p.S515R 0.39 tolerated(0.45) possibly_damaging(0.656) TCGA-QB-AA9O-06 19 57642044 57642044 G A USP29 Silent p.G667G 0.35 TCGA-QB-AA9O-06 19 57646788 57646788 G A ZIM3 Missense_Mutation p.P306L 0.16 deleterious(0.02) benign(0.011) TCGA-QB-AA9O-06 19 5766148 5766148 A T CATSPERD Missense_Mutation p.K514I 0.19 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 19 57743473 57743473 G A AURKC Silent p.L59L 0.11 TCGA-QB-AA9O-06 19 57765212 57765212 C T ZNF805 Missense_Mutation p.P342L 0.36 tolerated(0.13) probably_damaging(1) TCGA-QB-AA9O-06 19 58152539 58152539 C T ZNF211 Missense_Mutation p.H294Y 0.39 tolerated(1) benign(0.245) TCGA-QB-AA9O-06 19 58421349 58421351 GAG AA ZNF417 Frame_Shift_Del p.I100Sfs*20 0.11 TCGA-QB-AA9O-06 19 58489737 58489737 T G ZNF606 Missense_Mutation p.K771Q 0.37 deleterious(0.02) benign(0.037) TCGA-QB-AA9O-06 19 58598364 58598364 G A ZSCAN18 Silent p.S274S 0.32 TCGA-QB-AA9O-06 19 58850168 58850168 C T ZSCAN22 Missense_Mutation p.H318Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 19 6714204 6714204 A G C3 Missense_Mutation p.S219P 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-QB-AA9O-06 19 694901 694901 G A PRSS57 Missense_Mutation p.S50F 0.30 deleterious(0) probably_damaging(0.994) TCGA-QB-AA9O-06 19 7712094 7712094 C T STXBP2 Missense_Mutation p.S500F 0.19 deleterious(0) possibly_damaging(0.863) TCGA-QB-AA9O-06 19 8131003 8131003 C A FBN3 Nonsense_Mutation p.G2744* 0.54 TCGA-QB-AA9O-06 19 8645836 8645836 G A ADAMTS10 Nonsense_Mutation p.Q1085* 0.43 TCGA-QB-AA9O-06 19 8807924 8807924 C T ACTL9 Silent p.R376R 0.26 TCGA-QB-AA9O-06 19 8993486 8993486 G A MUC16 Missense_Mutation p.P13868L 0.48 probably_damaging(0.98) TCGA-QB-AA9O-06 19 9005634 9005634 C T MUC16 Missense_Mutation p.E13258K 0.17 probably_damaging(0.97) TCGA-QB-AA9O-06 19 9046044 9046044 G A MUC16 Missense_Mutation p.P11863S 0.27 benign(0.008) TCGA-QB-AA9O-06 19 9056859 9056859 A - MUC16 Frame_Shift_Del p.L10196Yfs*32 0.19 TCGA-QB-AA9O-06 19 9057806 9057806 C T MUC16 Silent p.R9880R 0.21 TCGA-QB-AA9O-06 19 9067913 9067913 G A MUC16 Silent p.S6511S 0.23 TCGA-QB-AA9O-06 19 9070145 9070145 G A MUC16 Silent p.F5767F 0.41 TCGA-QB-AA9O-06 19 9070548 9070548 G A MUC16 Missense_Mutation p.S5633F 0.43 unknown(0) TCGA-QB-AA9O-06 19 9071964 9071964 C T MUC16 Missense_Mutation p.G5161E 0.19 unknown(0) TCGA-QB-AA9O-06 19 9074986 9074986 C T MUC16 Missense_Mutation p.E4154K 0.16 unknown(0) TCGA-QB-AA9O-06 19 9083460 9083460 C T MUC16 Silent p.V2785V 0.53 TCGA-QB-AA9O-06 19 9087375 9087375 A G MUC16 Silent p.S1480S 0.16 TCGA-QB-AA9O-06 19 9089874 9089874 G A MUC16 Silent p.V647V 0.15 TCGA-QB-AA9O-06 1 100746847 100746847 C T RTCA Intron 0.11 TCGA-QB-AA9O-06 1 10207031 10207031 G A UBE4B Missense_Mutation p.R825Q 0.35 deleterious(0.01) possibly_damaging(0.487) TCGA-QB-AA9O-06 1 10713975 10713975 C T CASZ1 Silent p.K713K 0.65 TCGA-QB-AA9O-06 1 108116759 108116759 C T VAV3 Missense_Mutation p.M804I 0.15 tolerated(0.49) benign(0.309) TCGA-QB-AA9O-06 1 109742512 109742512 C T KIAA1324 Silent p.F846F 0.15 TCGA-QB-AA9O-06 1 110022195 110022195 G A SYPL2 3'UTR 0.19 TCGA-QB-AA9O-06 1 110022204 110022204 A T SYPL2 3'UTR 0.53 TCGA-QB-AA9O-06 1 110171845 110171845 C T AMPD2 Silent p.L616L 0.25 TCGA-QB-AA9O-06 1 110596512 110596512 C T STRIP1 Missense_Mutation p.S831F 0.22 deleterious(0.01) benign(0.276) TCGA-QB-AA9O-06 1 110607347 110607347 C T ALX3 Silent p.K152K 0.58 TCGA-QB-AA9O-06 1 111146613 111146613 G A KCNA2 Silent p.I264I 0.47 TCGA-QB-AA9O-06 1 111861223 111861223 G A CHIA Missense_Mutation p.G280R 0.15 tolerated(0.09) probably_damaging(0.997) TCGA-QB-AA9O-06 1 111861224 111861224 G A CHIA Missense_Mutation p.G280E 0.15 deleterious(0.03) probably_damaging(0.921) TCGA-QB-AA9O-06 1 112045992 112045992 G A ADORA3 5'UTR 0.36 TCGA-QB-AA9O-06 1 112302132 112302132 C T DDX20 Silent p.T169T 0.53 TCGA-QB-AA9O-06 1 114165532 114165532 G A MAGI3 Missense_Mutation p.G426S 0.18 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 114319908 114319908 G A RSBN1 Missense_Mutation p.P528S 0.18 deleterious(0) possibly_damaging(0.836) TCGA-QB-AA9O-06 1 114397635 114397635 A G PTPN22 Missense_Mutation p.W193R 0.22 deleterious(0.03) possibly_damaging(0.636) TCGA-QB-AA9O-06 1 114524266 114524266 C T OLFML3 Missense_Mutation p.P366S 0.11 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 114945437 114945437 A G TRIM33 Missense_Mutation p.L946S 0.42 tolerated(0.73) benign(0.002) TCGA-QB-AA9O-06 1 115113363 115113363 A G BCAS2 Missense_Mutation p.V143A 0.19 tolerated(0.51) possibly_damaging(0.901) TCGA-QB-AA9O-06 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.48 deleterious(0) benign(0.109) TCGA-QB-AA9O-06 1 115527431 115527431 G A SYCP1 Missense_Mutation p.R882K 0.55 tolerated(0.14) benign(0.037) TCGA-QB-AA9O-06 1 115593040 115593040 T G TSPAN2 3'UTR 0.16 TCGA-QB-AA9O-06 1 116206658 116206658 T A VANGL1 Missense_Mutation p.F194Y 0.59 deleterious(0.01) possibly_damaging(0.86) TCGA-QB-AA9O-06 1 116609720 116609720 G A SLC22A15 Missense_Mutation p.M545I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-QB-AA9O-06 1 116930806 116930806 C G ATP1A1 Silent p.S147S 0.22 TCGA-QB-AA9O-06 1 117122030 117122030 G A IGSF3 Silent p.I1126I 0.64 TCGA-QB-AA9O-06 1 11734814 11734814 G A MAD2L2 3'UTR 0.21 TCGA-QB-AA9O-06 1 118526470 118526470 C T SPAG17 Missense_Mutation p.E1946K 0.58 tolerated(1) benign(0.001) TCGA-QB-AA9O-06 1 119964767 119964767 G A HSD3B2 Missense_Mutation p.G215R 0.56 tolerated(0.32) possibly_damaging(0.493) TCGA-QB-AA9O-06 1 119964768 119964768 G A HSD3B2 Missense_Mutation p.G215E 0.56 tolerated(0.23) benign(0.371) TCGA-QB-AA9O-06 1 120509004 120509004 G A NOTCH2 Missense_Mutation p.P521L 0.17 tolerated(0.11) probably_damaging(1) TCGA-QB-AA9O-06 1 120509005 120509005 G A NOTCH2 Missense_Mutation p.P521S 0.17 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 1 12364667 12364667 G A VPS13D Silent p.T2107T 0.17 TCGA-QB-AA9O-06 1 12776278 12776278 C T AADACL3 5'UTR 0.29 TCGA-QB-AA9O-06 1 12907649 12907649 C T HNRNPCL1 Missense_Mutation p.G165E 0.21 tolerated(0.29) possibly_damaging(0.493) TCGA-QB-AA9O-06 1 13475193 13475193 A G PRAMEF18 Silent p.C312C 0.19 TCGA-QB-AA9O-06 1 142713164 142713164 C T RP11-417J8.6 RNA 0.37 TCGA-QB-AA9O-06 1 142713429 142713429 G A RP11-417J8.6 RNA 0.23 TCGA-QB-AA9O-06 1 142713608 142713608 C T RP11-417J8.6 RNA 0.26 TCGA-QB-AA9O-06 1 144994736 144994736 G A PDE4DIP 5'UTR 0.06 TCGA-QB-AA9O-06 1 145290446 145290446 C T NOTCH2NL 3'Flank 0.05 TCGA-QB-AA9O-06 1 145592732 145592732 G A POLR3C Silent p.F521F 0.22 TCGA-QB-AA9O-06 1 147380515 147380515 G A GJA8 Missense_Mutation p.G145R 0.34 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 150471005 150471005 C T TARS2 Silent p.S422S 0.83 TCGA-QB-AA9O-06 1 152058554 152058554 G A TCHHL1 Missense_Mutation p.P535L 0.35 tolerated(0.11) possibly_damaging(0.526) TCGA-QB-AA9O-06 1 152059064 152059064 T G TCHHL1 Missense_Mutation p.K365T 0.17 tolerated(0.05) possibly_damaging(0.52) TCGA-QB-AA9O-06 1 152325811 152325811 C T FLG2 Missense_Mutation p.G1484E 0.76 probably_damaging(0.97) TCGA-QB-AA9O-06 1 152732347 152732347 A G KPRP Missense_Mutation p.K95E 0.22 tolerated(0.09) benign(0.09) TCGA-QB-AA9O-06 1 153177316 153177316 G A LELP1 Missense_Mutation p.E45K 0.30 deleterious_low_confidence(0.01) benign(0.192) TCGA-QB-AA9O-06 1 153660127 153660127 C T NPR1 Missense_Mutation p.P704S 0.16 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 154229576 154229576 C T UBAP2L Missense_Mutation p.S732F 0.28 tolerated(0.09) unknown(0) TCGA-QB-AA9O-06 1 155004123 155004123 C T DCST2 Missense_Mutation p.M222I 0.36 deleterious(0.01) benign(0.001) TCGA-QB-AA9O-06 1 155039252 155039252 C T EFNA4 Silent p.L54L 0.69 TCGA-QB-AA9O-06 1 155254333 155254333 C T HCN3 Missense_Mutation p.H292Y 0.30 deleterious(0.01) benign(0.047) TCGA-QB-AA9O-06 1 15546183 15546183 C T TMEM51 Missense_Mutation p.P236S 0.42 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 1 155920765 155920765 G A ARHGEF2 Missense_Mutation p.A853V 0.47 tolerated(0.6) benign(0.004) TCGA-QB-AA9O-06 1 156006773 156006773 G A UBQLN4 Missense_Mutation p.S601F 0.24 deleterious(0) possibly_damaging(0.796) TCGA-QB-AA9O-06 1 157557816 157557816 A G FCRL4 Missense_Mutation p.V134A 0.23 tolerated(0.12) benign(0.114) TCGA-QB-AA9O-06 1 158224916 158224916 C T CD1A Missense_Mutation p.S34F 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-QB-AA9O-06 1 158724889 158724889 C T OR6K6 Missense_Mutation p.S95F 0.38 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 1 158725594 158725594 G A OR6K6 Missense_Mutation p.R330K 0.56 tolerated(1) benign(0.003) TCGA-QB-AA9O-06 1 159283611 159283611 G C OR10J3 Missense_Mutation p.T280S 0.59 deleterious(0.01) probably_damaging(0.997) TCGA-QB-AA9O-06 1 159283997 159283997 C T OR10J3 Silent p.G151G 0.59 TCGA-QB-AA9O-06 1 160293311 160293311 G A COPA Missense_Mutation p.R206C 0.43 deleterious(0) probably_damaging(0.995) TCGA-QB-AA9O-06 1 160718246 160718246 G A SLAMF7 Silent p.G106G 0.15 TCGA-QB-AA9O-06 1 161130460 161130460 C T USP21 Silent p.G10G 0.23 TCGA-QB-AA9O-06 1 161561067 161561067 C T FCGR2C 5'Flank 0.20 TCGA-QB-AA9O-06 1 161823061 161823061 G T ATF6 Missense_Mutation p.R494M 0.32 deleterious(0) probably_damaging(0.984) TCGA-QB-AA9O-06 1 162740290 162740290 G A DDR2 Missense_Mutation p.E498K 0.75 tolerated(0.67) benign(0.001) TCGA-QB-AA9O-06 1 16577662 16577662 G A FBXO42 Missense_Mutation p.P553S 0.32 deleterious_low_confidence(0) benign(0.255) TCGA-QB-AA9O-06 1 167042719 167042719 G A GPA33 Missense_Mutation p.S34L 0.79 deleterious(0.02) benign(0.002) TCGA-QB-AA9O-06 1 167944194 167944194 C T DCAF6 Nonsense_Mutation p.Q127* 0.54 TCGA-QB-AA9O-06 1 168215951 168215951 C T SFT2D2 3'UTR 0.27 TCGA-QB-AA9O-06 1 169525976 169525976 G A F5 Missense_Mutation p.T287I 0.40 deleterious(0.04) benign(0.184) TCGA-QB-AA9O-06 1 169773225 169773226 TC - C1orf112 Frame_Shift_Del p.S108Cfs*42 0.30 TCGA-QB-AA9O-06 1 169953730 169953730 G A KIFAP3 Silent p.I462I 0.21 TCGA-QB-AA9O-06 1 171252348 171252348 C T FMO1 Missense_Mutation p.P417S 0.59 tolerated(0.72) benign(0.186) TCGA-QB-AA9O-06 1 171510957 171510957 C T PRRC2C Missense_Mutation p.S1449L 0.74 unknown(0) TCGA-QB-AA9O-06 1 17405730 17405730 G A PADI2 Intron 0.41 TCGA-QB-AA9O-06 1 176811518 176811518 C T PAPPA2 Silent p.V1768V 0.33 TCGA-QB-AA9O-06 1 179077020 179077020 G A ABL2 Missense_Mutation p.P1128S 0.14 tolerated_low_confidence(0.1) benign(0.19) TCGA-QB-AA9O-06 1 180772648 180772648 C G XPR1 Missense_Mutation p.H116Q 0.06 tolerated(0.28) benign(0.21) TCGA-QB-AA9O-06 1 180772658 180772658 G A XPR1 Missense_Mutation p.E120K 0.07 tolerated(1) benign(0.004) TCGA-QB-AA9O-06 1 180772688 180772688 G A XPR1 Missense_Mutation p.D130N 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-QB-AA9O-06 1 184006279 184006279 G A COLGALT2 Silent p.F71F 0.62 TCGA-QB-AA9O-06 1 186121955 186121955 G C HMCN1 Silent p.V4990V 0.66 TCGA-QB-AA9O-06 1 186277371 186277371 G A PRG4 Silent p.K840K 0.64 TCGA-QB-AA9O-06 1 18809123 18809123 G A KLHDC7A Missense_Mutation p.G550R 0.32 deleterious(0.04) possibly_damaging(0.838) TCGA-QB-AA9O-06 1 190423793 190423793 C T BRINP3 Silent p.K76K 0.14 TCGA-QB-AA9O-06 1 19168237 19168237 A C TAS1R2 Missense_Mutation p.L526R 0.27 deleterious(0.01) benign(0.272) TCGA-QB-AA9O-06 1 192150534 192150534 C T RGS18 Silent p.H132H 0.58 TCGA-QB-AA9O-06 1 196953090 196953090 G A CFHR5 Splice_Site p.X85_splice 0.21 TCGA-QB-AA9O-06 1 197404359 197404359 A G CRB1 Silent p.E1122E 0.33 TCGA-QB-AA9O-06 1 201063099 201063099 C T CACNA1S Missense_Mutation p.M103I 0.27 deleterious(0.03) benign(0.02) TCGA-QB-AA9O-06 1 201185795 201185795 G A IGFN1 Missense_Mutation p.R3170K 0.26 benign(0.076) TCGA-QB-AA9O-06 1 201751595 201751595 C T NAV1 Missense_Mutation p.S652F 0.29 deleterious(0) possibly_damaging(0.89) TCGA-QB-AA9O-06 1 202097405 202097405 G A GPR37L1 Silent p.L389L 0.75 TCGA-QB-AA9O-06 1 202128411 202128411 C T PTPN7 Silent p.E145E 0.22 TCGA-QB-AA9O-06 1 203316807 203316807 C T FMOD Missense_Mutation p.G198R 0.28 deleterious(0.02) possibly_damaging(0.889) TCGA-QB-AA9O-06 1 203468926 203468926 G A OPTC Missense_Mutation p.D227N 0.17 deleterious(0) benign(0.442) TCGA-QB-AA9O-06 1 204923330 204923330 G A NFASC Missense_Mutation p.R77Q 0.22 deleterious(0) possibly_damaging(0.625) TCGA-QB-AA9O-06 1 205039084 205039084 G A CNTN2 Missense_Mutation p.E776K 0.43 tolerated(0.14) benign(0.212) TCGA-QB-AA9O-06 1 207131939 207131939 C T FCAMR Silent p.V552V 0.38 TCGA-QB-AA9O-06 1 209964107 209964107 G A IRF6 Missense_Mutation p.L265F 0.19 deleterious(0) probably_damaging(0.935) TCGA-QB-AA9O-06 1 212115237 212115237 G A INTS7 Missense_Mutation p.R940C 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-QB-AA9O-06 1 214705946 214705946 T C PTPN14 Intron 0.46 TCGA-QB-AA9O-06 1 214794162 214794162 T G CENPF Missense_Mutation p.F246L 0.49 benign(0.006) TCGA-QB-AA9O-06 1 216363710 216363710 C T USH2A Splice_Site p.X1418_splice 0.19 TCGA-QB-AA9O-06 1 222802880 222802880 C T MIA3 Missense_Mutation p.P773L 0.21 tolerated(0.63) benign(0.162) TCGA-QB-AA9O-06 1 223285661 223285661 C T TLR5 Nonsense_Mutation p.W238* 0.25 TCGA-QB-AA9O-06 1 224473770 224473770 G A NVL Silent p.L619L 0.15 TCGA-QB-AA9O-06 1 226924433 226924433 G A ITPKB Missense_Mutation p.P243S 0.28 tolerated_low_confidence(0.28) benign(0.004) TCGA-QB-AA9O-06 1 228033901 228033901 G A PRSS38 Missense_Mutation p.V325M 0.33 tolerated_low_confidence(0.28) benign(0.007) TCGA-QB-AA9O-06 1 228558444 228558444 G A OBSCN Missense_Mutation p.R7701Q 0.35 probably_damaging(0.975) TCGA-QB-AA9O-06 1 231360137 231360137 G A C1orf131 Missense_Mutation p.P257L 0.19 deleterious(0) probably_damaging(0.988) TCGA-QB-AA9O-06 1 2332336 2332336 C T RER1 Silent p.F109F 0.22 TCGA-QB-AA9O-06 1 233275578 233275578 C T PCNXL2 Missense_Mutation p.E1181K 0.24 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 1 233344313 233344313 C T PCNXL2 Silent p.L938L 0.10 TCGA-QB-AA9O-06 1 233518245 233518245 C T MLK4 Nonsense_Mutation p.Q967* 0.14 TCGA-QB-AA9O-06 1 233807144 233807144 C T KCNK1 Silent p.I293I 0.20 TCGA-QB-AA9O-06 1 237049636 237049636 C T MTR Silent p.F940F 0.38 TCGA-QB-AA9O-06 1 237754039 237754039 C T RYR2 Missense_Mutation p.R1303C 0.21 benign(0.41) TCGA-QB-AA9O-06 1 24018298 24018298 C T RPL11 5'UTR 0.35 TCGA-QB-AA9O-06 1 240286638 240286638 C T FMN2 Missense_Mutation p.S592L 0.26 unknown(0) TCGA-QB-AA9O-06 1 240371423 240371423 G A FMN2 Missense_Mutation p.G1104E 0.27 unknown(0) TCGA-QB-AA9O-06 1 240493976 240493976 G A FMN2 Missense_Mutation p.G1504E 0.15 probably_damaging(1) TCGA-QB-AA9O-06 1 240519181 240519181 G A FMN2 Missense_Mutation p.E1611K 0.17 possibly_damaging(0.515) TCGA-QB-AA9O-06 1 240939502 240939502 G A RGS7 Silent p.L475L 0.23 TCGA-QB-AA9O-06 1 242277329 242277329 C T PLD5 Splice_Site p.X312_splice 0.19 TCGA-QB-AA9O-06 1 245771043 245771043 C T KIF26B Silent p.L550L 0.47 TCGA-QB-AA9O-06 1 247150415 247150415 C T ZNF695 Missense_Mutation p.E468K 0.12 tolerated(0.06) possibly_damaging(0.741) TCGA-QB-AA9O-06 1 247655005 247655005 C T OR2W5 RNA 0.10 TCGA-QB-AA9O-06 1 248084441 248084441 C T OR2T8 Missense_Mutation p.S41F 0.32 tolerated(0.06) benign(0.035) TCGA-QB-AA9O-06 1 248201930 248201930 C T OR2L2 Missense_Mutation p.R121C 0.47 deleterious(0.01) benign(0.12) TCGA-QB-AA9O-06 1 248309007 248309007 C T OR2M5 Silent p.I186I 0.16 TCGA-QB-AA9O-06 1 248343371 248343371 C T OR2M2 Silent p.F28F 0.42 TCGA-QB-AA9O-06 1 248367097 248367097 C T OR2M3 Missense_Mutation p.S243F 0.14 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 1 248436537 248436537 C T OR2T33 Missense_Mutation p.E194K 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-QB-AA9O-06 1 248458370 248458370 C T OR2T12 Missense_Mutation p.E171K 0.19 tolerated(0.13) possibly_damaging(0.477) TCGA-QB-AA9O-06 1 248512324 248512324 C T OR14C36 Missense_Mutation p.S83F 0.11 tolerated(0.2) benign(0.016) TCGA-QB-AA9O-06 1 248617067 248617067 G A OR2T2 Silent p.K323K 0.13 TCGA-QB-AA9O-06 1 248617068 248617068 G A OR2T2 Missense_Mutation p.G324S 0.14 tolerated_low_confidence(0.66) benign(0) TCGA-QB-AA9O-06 1 26881172 26881172 C T RPS6KA1 Silent p.V242V 0.32 TCGA-QB-AA9O-06 1 27873846 27873846 G A AHDC1 Missense_Mutation p.P1594L 0.37 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-QB-AA9O-06 1 28477239 28477239 G A PTAFR Silent p.F98F 0.40 TCGA-QB-AA9O-06 1 3328367 3328367 A T PRDM16 Nonsense_Mutation p.K536* 0.45 TCGA-QB-AA9O-06 1 34068084 34068084 G A CSMD2 Missense_Mutation p.P2201S 0.59 deleterious(0.04) benign(0.158) TCGA-QB-AA9O-06 1 34117951 34117951 C T CSMD2 Missense_Mutation p.D1480N 0.44 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 1 34117952 34117952 T C CSMD2 Silent p.P1479P 0.43 TCGA-QB-AA9O-06 1 34174747 34174747 C T CSMD2 Missense_Mutation p.G1133E 0.40 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 34329726 34329726 G A HMGB4 5'UTR 0.44 TCGA-QB-AA9O-06 1 35365767 35365767 C T DLGAP3 Silent p.E405E 0.38 TCGA-QB-AA9O-06 1 36215379 36215379 C A CLSPN Nonsense_Mutation p.E688* 0.29 TCGA-QB-AA9O-06 1 36643493 36643493 C T MAP7D1 Missense_Mutation p.P467S 0.25 probably_damaging(0.999) TCGA-QB-AA9O-06 1 38323218 38323218 G A MTF1 Missense_Mutation p.S38F 0.53 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 1 40038224 40038224 C T PABPC4 Silent p.V76V 0.36 TCGA-QB-AA9O-06 1 43213915 43213915 G A LEPRE1 Silent p.L598L 0.18 TCGA-QB-AA9O-06 1 43805212 43805212 G A MPL Missense_Mutation p.G221E 0.28 tolerated(0.08) benign(0.06) TCGA-QB-AA9O-06 1 44087732 44087732 C T PTPRF 3'UTR 0.42 TCGA-QB-AA9O-06 1 45216134 45216134 C T KIF2C Missense_Mutation p.R113C 0.33 deleterious(0) probably_damaging(0.932) TCGA-QB-AA9O-06 1 47498953 47498953 G A CYP4X1 Silent p.Q135Q 0.30 TCGA-QB-AA9O-06 1 47504409 47504409 G A CYP4X1 Missense_Mutation p.D285N 0.32 deleterious(0.03) benign(0.128) TCGA-QB-AA9O-06 1 53459065 53459065 C T SCP2 Intron 0.36 TCGA-QB-AA9O-06 1 53513566 53513566 C G SCP2 Nonsense_Mutation p.S502* 0.17 TCGA-QB-AA9O-06 1 53716412 53716412 C T LRP8 Missense_Mutation p.D876N 0.20 deleterious(0.01) possibly_damaging(0.881) TCGA-QB-AA9O-06 1 54059842 54059842 G A GLIS1 Missense_Mutation p.A245V 0.23 deleterious(0) probably_damaging(0.967) TCGA-QB-AA9O-06 1 54497833 54497833 G A TMEM59 Missense_Mutation p.S321F 0.32 deleterious(0) probably_damaging(0.972) TCGA-QB-AA9O-06 1 57320650 57320650 C T C8A Nonsense_Mutation p.Q26* 0.14 TCGA-QB-AA9O-06 1 57341732 57341732 C T C8A Intron 0.42 TCGA-QB-AA9O-06 1 57347127 57347127 C T C8A Silent p.I158I 0.32 TCGA-QB-AA9O-06 1 57476397 57476397 C T DAB1 Missense_Mutation p.D547N 0.20 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-QB-AA9O-06 1 65113583 65113583 T G CACHD1 Missense_Mutation p.I368S 0.38 tolerated(0.1) benign(0.007) TCGA-QB-AA9O-06 1 6528556 6528556 G A PLEKHG5 Silent p.F859F 0.30 TCGA-QB-AA9O-06 1 68948156 68948156 A G DEPDC1 Silent p.F445F 0.20 TCGA-QB-AA9O-06 1 71478002 71478002 G A PTGER3 Nonsense_Mutation p.R355* 0.41 TCGA-QB-AA9O-06 1 74507600 74507600 C T LRRIQ3 Missense_Mutation p.E339K 0.35 tolerated(0.06) benign(0.033) TCGA-QB-AA9O-06 1 75055504 75055504 C T C1orf173 Missense_Mutation p.E663K 0.38 tolerated(0.05) benign(0.44) TCGA-QB-AA9O-06 1 75097501 75097501 G A C1orf173 Missense_Mutation p.P239S 0.31 deleterious(0.05) benign(0.401) TCGA-QB-AA9O-06 1 75101979 75101979 A G C1orf173 Silent p.A196A 0.22 TCGA-QB-AA9O-06 1 75693478 75693478 G A SLC44A5 Silent p.I306I 0.21 TCGA-QB-AA9O-06 1 77806221 77806221 A G AK5 Missense_Mutation p.K287E 0.30 deleterious(0.01) benign(0.331) TCGA-QB-AA9O-06 1 78280889 78280889 G A FAM73A Missense_Mutation p.D290N 0.35 deleterious(0.05) benign(0.444) TCGA-QB-AA9O-06 1 7863193 7863193 T G PER3 Missense_Mutation p.M319R 0.17 deleterious(0) possibly_damaging(0.537) TCGA-QB-AA9O-06 1 79357250 79357250 C T ELTD1 Missense_Mutation p.G657R 0.38 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 82408904 82408904 G A LPHN2 Missense_Mutation p.G217S 0.31 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 1 82456771 82456771 G A LPHN2 Missense_Mutation p.G1385E 0.18 tolerated_low_confidence(0.22) benign(0.031) TCGA-QB-AA9O-06 1 8420006 8420006 G A RERE Missense_Mutation p.R1146W 0.19 unknown(0) TCGA-QB-AA9O-06 1 8421874 8421874 G A RERE Silent p.A655A 0.39 TCGA-QB-AA9O-06 1 86590676 86590676 C T COL24A1 Missense_Mutation p.R448K 0.30 tolerated(1) benign(0.003) TCGA-QB-AA9O-06 1 89586914 89586914 C T GBP2 Missense_Mutation p.G77E 0.27 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 1 9078428 9078428 G A SLC2A7 Missense_Mutation p.S148F 0.20 deleterious(0) possibly_damaging(0.724) TCGA-QB-AA9O-06 1 91180155 91180155 G A BARHL2 Missense_Mutation p.R262C 0.29 deleterious(0) unknown(0) TCGA-QB-AA9O-06 1 92443725 92443725 G A BRDT Missense_Mutation p.E324K 0.15 tolerated(1) benign(0.003) TCGA-QB-AA9O-06 1 92459806 92459806 C T BRDT Missense_Mutation p.P761L 0.25 tolerated(0.56) benign(0.004) TCGA-QB-AA9O-06 1 97770838 97770838 C T DPYD Missense_Mutation p.R759Q 0.50 tolerated(0.15) benign(0.063) TCGA-QB-AA9O-06 1 9782053 9782053 G A PIK3CD Silent p.L692L 0.46 TCGA-QB-AA9O-06 20 10023937 10023937 G A ANKEF1 Missense_Mutation p.E172K 0.26 deleterious(0.02) possibly_damaging(0.825) TCGA-QB-AA9O-06 20 10286853 10286853 C T SNAP25 3'UTR 0.45 TCGA-QB-AA9O-06 20 13840080 13840080 C T SEL1L2 Intron 0.20 TCGA-QB-AA9O-06 20 1514971 1514971 G A SIRPD 3'UTR 0.24 TCGA-QB-AA9O-06 20 17474810 17474810 A G BFSP1 Missense_Mutation p.I636T 0.31 deleterious(0) possibly_damaging(0.878) TCGA-QB-AA9O-06 20 1895926 1895926 C A SIRPA Missense_Mutation p.F87L 0.18 tolerated(0.08) possibly_damaging(0.529) TCGA-QB-AA9O-06 20 20486160 20486160 G A RALGAPA2 Silent p.I1649I 0.35 TCGA-QB-AA9O-06 20 23016969 23016969 C T SSTR4 Silent p.L283L 0.16 TCGA-QB-AA9O-06 20 25484703 25484703 C T NINL Missense_Mutation p.G249E 0.41 deleterious(0) possibly_damaging(0.688) TCGA-QB-AA9O-06 20 2779505 2779505 G A CPXM1 Silent p.I69I 0.49 TCGA-QB-AA9O-06 20 29847382 29847382 G A DEFB115 Missense_Mutation p.D72N 0.28 tolerated(0.33) benign(0.026) TCGA-QB-AA9O-06 20 30526958 30526958 G A TTLL9 Missense_Mutation p.E378K 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-QB-AA9O-06 20 31811665 31811665 A G BPIFA3 Missense_Mutation p.N59S 0.47 tolerated(0.33) benign(0.338) TCGA-QB-AA9O-06 20 32369103 32369103 C T ZNF341 Silent p.V536V 0.27 TCGA-QB-AA9O-06 20 3268301 3268301 G A C20orf194 Silent p.T821T 0.49 TCGA-QB-AA9O-06 20 3653569 3653569 G A ADAM33 Intron 0.31 TCGA-QB-AA9O-06 20 40117234 40117234 A C CHD6 Missense_Mutation p.L564R 0.51 deleterious(0.05) possibly_damaging(0.814) TCGA-QB-AA9O-06 20 40710600 40710600 G A PTPRT Silent p.I1398I 0.20 TCGA-QB-AA9O-06 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.18 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 20 4164156 4164156 C T SMOX Missense_Mutation p.P462L 0.48 deleterious(0) probably_damaging(0.986) TCGA-QB-AA9O-06 20 42328568 42328568 C T MYBL2 Nonsense_Mutation p.Q279* 0.21 TCGA-QB-AA9O-06 20 42355377 42355377 G A GTSF1L 5'UTR 0.55 TCGA-QB-AA9O-06 20 42695393 42695393 C T TOX2 Silent p.F460F 0.26 TCGA-QB-AA9O-06 20 43385614 43385614 G A RIMS4 Silent p.V173V 0.30 TCGA-QB-AA9O-06 20 44108701 44108701 G T WFDC2 Missense_Mutation p.G115W 0.34 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 20 44279281 44279281 C T WFDC11 5'UTR 0.19 TCGA-QB-AA9O-06 20 44576025 44576025 C T PCIF1 Silent p.L611L 0.14 TCGA-QB-AA9O-06 20 44670039 44670039 G A SLC12A5 Missense_Mutation p.G332E 0.53 tolerated(0.5) benign(0.012) TCGA-QB-AA9O-06 20 46318919 46318919 C T SULF2 Missense_Mutation p.D230N 0.09 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 20 47850227 47850227 C T DDX27 Silent p.D449D 0.31 TCGA-QB-AA9O-06 20 47850228 47850228 C T DDX27 Missense_Mutation p.R450W 0.31 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 20 47886757 47886757 G A ZNFX1 Missense_Mutation p.P531L 0.49 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 20 47990127 47990127 G A KCNB1 Missense_Mutation p.P657L 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.696) TCGA-QB-AA9O-06 20 51870073 51870073 G A TSHZ2 Missense_Mutation p.E26K 0.52 tolerated(0.92) benign(0.015) TCGA-QB-AA9O-06 20 56191367 56191367 G A ZBP1 Silent p.A64A 0.48 TCGA-QB-AA9O-06 20 58475285 58475285 T C SYCP2 Missense_Mutation p.K438E 0.41 tolerated(0.46) probably_damaging(0.949) TCGA-QB-AA9O-06 20 5924482 5924482 G T TRMT6 Intron 0.42 TCGA-QB-AA9O-06 20 60485496 60485496 G A CDH4 Missense_Mutation p.E403K 0.24 deleterious(0) probably_damaging(0.989) TCGA-QB-AA9O-06 20 60854256 60854256 C T OSBPL2 Missense_Mutation p.H179Y 0.32 deleterious(0) possibly_damaging(0.804) TCGA-QB-AA9O-06 20 61389619 61389619 T G NTSR1 Silent p.R306R 0.20 TCGA-QB-AA9O-06 20 62340149 62340149 C T ZGPAT Missense_Mutation p.R73C 0.32 tolerated(0.05) benign(0.39) TCGA-QB-AA9O-06 20 62560863 62560863 C T DNAJC5 Silent p.S102S 0.09 TCGA-QB-AA9O-06 20 62839053 62839053 C T MYT1 Silent p.L168L 0.26 TCGA-QB-AA9O-06 20 9318655 9318655 G A PLCB4 Missense_Mutation p.E56K 0.24 deleterious(0.02) probably_damaging(0.948) TCGA-QB-AA9O-06 20 9346159 9346159 G A PLCB4 Silent p.R167R 0.23 TCGA-QB-AA9O-06 20 9376258 9376258 C T PLCB4 Silent p.I501I 0.21 TCGA-QB-AA9O-06 20 9438095 9438095 G A PLCB4 Missense_Mutation p.E999K 0.15 tolerated(0.09) probably_damaging(0.972) TCGA-QB-AA9O-06 20 9453953 9453953 G A PLCB4 Missense_Mutation p.D1134N 0.10 deleterious(0) possibly_damaging(0.466) TCGA-QB-AA9O-06 20 9453961 9453961 G A PLCB4 Silent p.L1136L 0.09 TCGA-QB-AA9O-06 21 10862760 10862760 C T IGHV1OR21-1 Missense_Mutation p.S19F 0.24 deleterious(0.01) possibly_damaging(0.707) TCGA-QB-AA9O-06 21 10934997 10934997 C T TPTE Missense_Mutation p.E266K 0.09 deleterious(0.02) possibly_damaging(0.775) TCGA-QB-AA9O-06 21 11029662 11029662 G A BAGE2 RNA 0.14 TCGA-QB-AA9O-06 21 11039328 11039328 C T BAGE2 RNA 0.03 TCGA-QB-AA9O-06 21 11098740 11098740 T C BAGE2 RNA 0.32 TCGA-QB-AA9O-06 21 17911424 17911424 C T MIR99A RNA 0.33 TCGA-QB-AA9O-06 21 19647541 19647541 A G TMPRSS15 Silent p.Y959Y 0.46 TCGA-QB-AA9O-06 21 27062247 27062247 G A JAM2 Missense_Mutation p.R68Q 0.16 tolerated(0.38) benign(0.021) TCGA-QB-AA9O-06 21 27840942 27840942 G A CYYR1 Missense_Mutation p.P115S 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-QB-AA9O-06 21 35247793 35247793 C T ITSN1 Nonsense_Mutation p.Q1437* 0.44 TCGA-QB-AA9O-06 21 37732504 37732504 C T MORC3 Missense_Mutation p.P452S 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-QB-AA9O-06 21 37833722 37833722 G A CLDN14 Missense_Mutation p.S91L 0.22 deleterious(0) possibly_damaging(0.757) TCGA-QB-AA9O-06 21 42807919 42807919 G A MX1 Silent p.L87L 0.42 TCGA-QB-AA9O-06 21 43529773 43529773 G A UMODL1 Missense_Mutation p.D541N 0.29 deleterious(0) possibly_damaging(0.754) TCGA-QB-AA9O-06 22 17073144 17073144 C T CCT8L2 Silent p.E99E 0.23 TCGA-QB-AA9O-06 22 21998253 21998253 A T SDF2L1 Missense_Mutation p.Q152L 0.69 tolerated(0.17) benign(0.002) TCGA-QB-AA9O-06 22 24615973 24615973 C T GGT5 Missense_Mutation p.D577N 0.15 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 22 24807557 24807557 A G SPECC1L Missense_Mutation p.N1030S 0.33 deleterious(0.02) benign(0.05) TCGA-QB-AA9O-06 22 25019811 25019811 C T GGT1 Silent p.I316I 0.73 TCGA-QB-AA9O-06 22 25623925 25623925 C T CRYBB2 Silent p.S93S 0.40 TCGA-QB-AA9O-06 22 26423157 26423157 T C MYO18B Missense_Mutation p.F2406S 0.43 tolerated(0.05) benign(0.273) TCGA-QB-AA9O-06 22 26736542 26736542 C T SEZ6L Missense_Mutation p.S719L 0.45 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 22 27026412 27026412 G A CRYBA4 Silent p.P184P 0.44 TCGA-QB-AA9O-06 22 29708239 29708239 G A GAS2L1 3'Flank 0.57 TCGA-QB-AA9O-06 22 29752556 29752556 G A AP1B1 Missense_Mutation p.P192L 0.72 deleterious(0.02) benign(0.021) TCGA-QB-AA9O-06 22 30951479 30951479 G A GAL3ST1 Missense_Mutation p.R245C 0.22 deleterious(0.03) benign(0.077) TCGA-QB-AA9O-06 22 31969183 31969183 T G SFI1 Missense_Mutation p.V302G 0.52 tolerated(0.14) possibly_damaging(0.57) TCGA-QB-AA9O-06 22 32831773 32831773 C T BPIFC Missense_Mutation p.G281E 0.67 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.14 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 22 37637117 37637117 C T RAC2 Intron 0.89 TCGA-QB-AA9O-06 22 38120078 38120078 C T TRIOBP Silent p.A505A 0.31 TCGA-QB-AA9O-06 22 38120124 38120124 G A TRIOBP Missense_Mutation p.A521T 0.29 tolerated_low_confidence(0.6) unknown(0) TCGA-QB-AA9O-06 22 38120302 38120302 C T TRIOBP Missense_Mutation p.A580V 0.14 tolerated_low_confidence(0.07) benign(0.008) TCGA-QB-AA9O-06 22 38621442 38621442 G A TMEM184B Missense_Mutation p.S259F 0.57 deleterious(0) probably_damaging(0.984) TCGA-QB-AA9O-06 22 38696770 38696770 C T CSNK1E Missense_Mutation p.G175D 0.81 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-QB-AA9O-06 22 39262872 39262872 G A CBX6 Missense_Mutation p.A194V 0.24 tolerated(0.07) benign(0.004) TCGA-QB-AA9O-06 22 40036982 40036982 C T CACNA1I Missense_Mutation p.P284L 0.70 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 22 43464464 43464464 T C TTLL1 Missense_Mutation p.N152S 0.21 tolerated(0.06) possibly_damaging(0.893) TCGA-QB-AA9O-06 22 44234825 44234825 G A SULT4A1 Nonsense_Mutation p.Q144* 0.91 TCGA-QB-AA9O-06 22 44892571 44892571 G A LDOC1L 3'UTR 0.16 TCGA-QB-AA9O-06 2 100916188 100916188 G A LONRF2 Missense_Mutation p.P420S 0.36 tolerated(0.38) probably_damaging(0.996) TCGA-QB-AA9O-06 2 101883220 101883220 A T CNOT11 Missense_Mutation p.N373Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 2 102781296 102781296 C T IL1R1 Missense_Mutation p.R42C 0.43 deleterious(0.02) probably_damaging(0.964) TCGA-QB-AA9O-06 2 102992414 102992414 G A IL18R1 Silent p.K172K 0.42 TCGA-QB-AA9O-06 2 103040361 103040361 C T IL18RAP Missense_Mutation p.S54L 0.24 tolerated(0.06) benign(0.164) TCGA-QB-AA9O-06 2 103095645 103095645 C T SLC9A4 Silent p.L202L 0.31 TCGA-QB-AA9O-06 2 103149106 103149106 G A SLC9A4 Missense_Mutation p.D786N 0.38 tolerated_low_confidence(0.06) benign(0.016) TCGA-QB-AA9O-06 2 107039500 107039500 C T RGPD3 Silent p.K1641K 0.10 TCGA-QB-AA9O-06 2 107423304 107423304 C T ST6GAL2 Missense_Mutation p.D474N 0.32 probably_damaging(1) TCGA-QB-AA9O-06 2 107460052 107460052 C T ST6GAL2 Missense_Mutation p.D128N 0.39 benign(0.004) TCGA-QB-AA9O-06 2 107460400 107460400 T C ST6GAL2 Missense_Mutation p.M12V 0.37 benign(0.015) TCGA-QB-AA9O-06 2 109964301 109964301 C T SH3RF3 Nonsense_Mutation p.Q249* 0.23 TCGA-QB-AA9O-06 2 110902089 110902089 G A NPHP1 Silent p.D526D 0.70 TCGA-QB-AA9O-06 2 111881335 111881335 C T BCL2L11 Missense_Mutation p.P5S 0.31 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-QB-AA9O-06 2 112620027 112620027 C T ANAPC1 Missense_Mutation p.E401K 0.14 tolerated(0.63) possibly_damaging(0.585) TCGA-QB-AA9O-06 2 113785485 113785485 C T IL36B Intron 0.47 TCGA-QB-AA9O-06 2 116066815 116066815 G A DPP10 Missense_Mutation p.E25K 0.38 deleterious(0.03) possibly_damaging(0.615) TCGA-QB-AA9O-06 2 118703137 118703137 G A CCDC93 Missense_Mutation p.P440S 0.32 tolerated(0.72) benign(0) TCGA-QB-AA9O-06 2 119732004 119732004 G A MARCO Missense_Mutation p.D186N 0.38 tolerated(0.54) benign(0.067) TCGA-QB-AA9O-06 2 120373264 120373264 G A PCDP1 Silent p.R463R 0.24 TCGA-QB-AA9O-06 2 121746659 121746659 G A GLI2 Missense_Mutation p.E1057K 0.37 deleterious(0.01) benign(0.129) TCGA-QB-AA9O-06 2 122038789 122038789 C T TFCP2L1 Missense_Mutation p.E41K 0.41 tolerated(0.07) benign(0.039) TCGA-QB-AA9O-06 2 130798009 130798009 G A KLF2P1 3'Flank 0.25 TCGA-QB-AA9O-06 2 130899942 130899942 C T CCDC74B Missense_Mutation p.G103E 0.33 tolerated(1) benign(0.168) TCGA-QB-AA9O-06 2 130951773 130951773 C T TUBA3E Silent p.R214R 0.47 TCGA-QB-AA9O-06 2 131521887 131521887 C T AMER3 Missense_Mutation p.R748C 0.28 tolerated(0.18) benign(0.001) TCGA-QB-AA9O-06 2 132021221 132021221 C T POTEE Silent p.F731F 0.18 TCGA-QB-AA9O-06 2 133721339 133721339 C T NCKAP5 Missense_Mutation p.G178E 0.26 tolerated(0.39) probably_damaging(0.933) TCGA-QB-AA9O-06 2 136570466 136570466 G A LCT Missense_Mutation p.R590C 0.63 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 2 136680411 136680411 G A DARS Silent p.L252L 0.27 TCGA-QB-AA9O-06 2 136873005 136873005 G A CXCR4 Missense_Mutation p.L169F 0.33 tolerated(0.25) benign(0.016) TCGA-QB-AA9O-06 2 137988652 137988652 C T THSD7B Missense_Mutation p.P588S 0.47 tolerated(0.39) benign(0.104) TCGA-QB-AA9O-06 2 138320916 138320916 G A THSD7B Silent p.R1091R 0.44 TCGA-QB-AA9O-06 2 155102452 155102452 A G GALNT13 Missense_Mutation p.R272G 0.35 deleterious(0.02) possibly_damaging(0.627) TCGA-QB-AA9O-06 2 158272233 158272233 G A CYTIP Missense_Mutation p.P346S 0.35 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 2 159197166 159197166 G A CCDC148 Missense_Mutation p.S93F 0.35 tolerated(0.12) probably_damaging(0.919) TCGA-QB-AA9O-06 2 160743022 160743022 C T LY75-CD302 Silent p.K274K 0.40 TCGA-QB-AA9O-06 2 160964212 160964212 C T ITGB6 Missense_Mutation p.R749Q 0.36 deleterious(0) probably_damaging(0.941) TCGA-QB-AA9O-06 2 163002059 163002059 C T GCG Missense_Mutation p.G128E 0.41 tolerated(0.33) benign(0.036) TCGA-QB-AA9O-06 2 163130398 163130398 G A IFIH1 Silent p.I787I 0.38 TCGA-QB-AA9O-06 2 163236381 163236381 A C KCNH7 Missense_Mutation p.L1038R 0.35 deleterious(0) probably_damaging(0.986) TCGA-QB-AA9O-06 2 163241365 163241365 C T KCNH7 Missense_Mutation p.S932N 0.33 tolerated(0.08) benign(0.066) TCGA-QB-AA9O-06 2 1652117 1652117 G A PXDN Silent p.S1145S 0.18 TCGA-QB-AA9O-06 2 166032726 166032726 T C SCN3A Missense_Mutation p.N60S 0.12 tolerated(1) benign(0.004) TCGA-QB-AA9O-06 2 167055917 167055917 G A SCN9A Silent p.I1733I 0.35 TCGA-QB-AA9O-06 2 167129383 167129383 G A SCN9A Silent p.V948V 0.30 TCGA-QB-AA9O-06 2 168105585 168105585 G A XIRP2 Silent p.Q2561Q 0.27 TCGA-QB-AA9O-06 2 168107877 168107877 C T XIRP2 Silent p.F3325F 0.35 TCGA-QB-AA9O-06 2 168110675 168110675 G A XIRP2 Intron 0.34 TCGA-QB-AA9O-06 2 168115287 168115287 C A XIRP2 3'UTR 0.33 TCGA-QB-AA9O-06 2 170011072 170011072 G A LRP2 Nonsense_Mutation p.R4065* 0.32 TCGA-QB-AA9O-06 2 170030651 170030651 C T LRP2 Missense_Mutation p.E3598K 0.33 benign(0.411) TCGA-QB-AA9O-06 2 170097483 170097483 G A LRP2 Intron 0.32 TCGA-QB-AA9O-06 2 170097651 170097651 C T LRP2 Missense_Mutation p.D1298N 0.35 probably_damaging(1) TCGA-QB-AA9O-06 2 172950324 172950324 C T DLX1 5'UTR 0.23 TCGA-QB-AA9O-06 2 175094114 175094114 G A OLA1 Missense_Mutation p.T56I 0.35 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 2 175094115 175094115 T A OLA1 Missense_Mutation p.T56S 0.35 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 2 175939350 175939350 G A ATF2 Missense_Mutation p.P502L 0.38 deleterious_low_confidence(0) benign(0.127) TCGA-QB-AA9O-06 2 175939351 175939351 G T ATF2 Missense_Mutation p.P502T 0.38 deleterious_low_confidence(0.01) benign(0.068) TCGA-QB-AA9O-06 2 176987459 176987459 G A HOXD9 5'UTR 0.29 TCGA-QB-AA9O-06 2 176987460 176987460 G A HOXD9 5'UTR 0.29 TCGA-QB-AA9O-06 2 17699015 17699015 C T RAD51AP2 Missense_Mutation p.R223K 0.43 tolerated(1) benign(0) TCGA-QB-AA9O-06 2 17699187 17699187 C T RAD51AP2 Missense_Mutation p.D166N 0.47 tolerated(0.43) benign(0.029) TCGA-QB-AA9O-06 2 179396190 179396190 G A TTN Missense_Mutation p.S35051F 0.33 TCGA-QB-AA9O-06 2 179400734 179400734 A G TTN Silent p.S33580S 0.37 TCGA-QB-AA9O-06 2 179404624 179404624 C T TTN Missense_Mutation p.R32723K 0.37 TCGA-QB-AA9O-06 2 179418727 179418727 T C TTN Missense_Mutation p.Y29704C 0.32 TCGA-QB-AA9O-06 2 179421643 179421643 C T TTN Missense_Mutation p.R29413K 0.36 TCGA-QB-AA9O-06 2 179429367 179429367 G A TTN Silent p.C27164C 0.30 TCGA-QB-AA9O-06 2 179433253 179433253 C T TTN Missense_Mutation p.G25869E 0.42 TCGA-QB-AA9O-06 2 179433499 179433499 A G TTN Missense_Mutation p.V25787A 0.41 TCGA-QB-AA9O-06 2 179441536 179441536 T G TTN Missense_Mutation p.K23145N 0.33 TCGA-QB-AA9O-06 2 179474489 179474489 G A TTN Missense_Mutation p.R17221C 0.37 TCGA-QB-AA9O-06 2 179475813 179475813 G A TTN Missense_Mutation p.P17015S 0.24 TCGA-QB-AA9O-06 2 179479495 179479495 A C TTN Intron 0.21 TCGA-QB-AA9O-06 2 179495917 179495917 T C TTN Missense_Mutation p.K14620E 0.15 TCGA-QB-AA9O-06 2 179501491 179501491 C T TTN Missense_Mutation p.E13655K 0.30 TCGA-QB-AA9O-06 2 179528434 179528434 G A TTN Missense_Mutation p.P12151L 0.33 TCGA-QB-AA9O-06 2 179584079 179584079 G A TTN Missense_Mutation p.P8013L 0.36 TCGA-QB-AA9O-06 2 179588004 179588004 C T TTN Missense_Mutation p.G7244R 0.30 TCGA-QB-AA9O-06 2 179612720 179612720 C T TTN Intron 0.34 TCGA-QB-AA9O-06 2 179615714 179615714 C T TTN Intron 0.40 TCGA-QB-AA9O-06 2 179616707 179616707 C T TTN Intron 0.33 TCGA-QB-AA9O-06 2 179631340 179631340 C T TTN Splice_Site p.X3158_splice 0.42 TCGA-QB-AA9O-06 2 179701892 179701892 C T CCDC141 Missense_Mutation p.D1352N 0.34 tolerated(0.54) benign(0.013) TCGA-QB-AA9O-06 2 185803636 185803636 C A ZNF804A Silent p.I1171I 0.37 TCGA-QB-AA9O-06 2 187703762 187703762 C T ZSWIM2 Missense_Mutation p.E140K 0.38 deleterious(0.02) possibly_damaging(0.606) TCGA-QB-AA9O-06 2 188245470 188245470 C T CALCRL Missense_Mutation p.D77N 0.37 deleterious(0) possibly_damaging(0.875) TCGA-QB-AA9O-06 2 189458714 189458714 C T GULP1 Silent p.L297L 0.37 TCGA-QB-AA9O-06 2 189864234 189864234 T G COL3A1 Silent p.G720G 0.24 TCGA-QB-AA9O-06 2 189876370 189876370 G A COL3A1 Nonsense_Mutation p.W1424* 0.27 TCGA-QB-AA9O-06 2 189898713 189898713 G A COL5A2 3'UTR 0.34 TCGA-QB-AA9O-06 2 192194692 192194692 C T MYO1B Silent p.L95L 0.44 TCGA-QB-AA9O-06 2 192250753 192250753 C T MYO1B Silent p.F499F 0.19 TCGA-QB-AA9O-06 2 192701381 192701381 C T SDPR Silent p.G182G 0.37 TCGA-QB-AA9O-06 2 196619072 196619072 G A DNAH7 Missense_Mutation p.P3918L 0.37 deleterious(0.02) benign(0.13) TCGA-QB-AA9O-06 2 196661461 196661461 C T DNAH7 Missense_Mutation p.G3452R 0.29 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 2 196664066 196664066 G A DNAH7 Missense_Mutation p.P3436L 0.13 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 2 196673519 196673519 G A DNAH7 Missense_Mutation p.P3324S 0.42 tolerated(0.95) benign(0.344) TCGA-QB-AA9O-06 2 196866489 196866489 G A DNAH7 Silent p.F361F 0.38 TCGA-QB-AA9O-06 2 20137551 20137551 G A WDR35 Silent p.F751F 0.23 TCGA-QB-AA9O-06 2 201997851 201997851 G A CFLAR Silent p.K127K 0.33 TCGA-QB-AA9O-06 2 202003134 202003134 C T CFLAR Intron 0.43 TCGA-QB-AA9O-06 2 202014468 202014468 C T CFLAR Intron 0.38 TCGA-QB-AA9O-06 2 202050529 202050529 C T CASP10 Missense_Mutation p.S10F 0.33 tolerated(0.14) benign(0.044) TCGA-QB-AA9O-06 2 202050530 202050530 C T CASP10 Silent p.S10S 0.33 TCGA-QB-AA9O-06 2 206872063 206872063 A C INO80D Missense_Mutation p.F621L 0.26 tolerated(0.14) probably_damaging(0.997) TCGA-QB-AA9O-06 2 207170029 207170029 G A ZDBF2 Silent p.R259R 0.45 TCGA-QB-AA9O-06 2 207170357 207170357 A G ZDBF2 Missense_Mutation p.I369V 0.39 deleterious(0.03) benign(0.001) TCGA-QB-AA9O-06 2 207414840 207414840 G A ADAM23 Missense_Mutation p.E297K 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-QB-AA9O-06 2 207583043 207583043 C T DYTN 5'UTR 0.50 TCGA-QB-AA9O-06 2 209101776 209101776 A G IDH1 3'UTR 0.35 TCGA-QB-AA9O-06 2 210560970 210560970 T C MAP2 Missense_Mutation p.V1359A 0.31 tolerated(0.14) benign(0.019) TCGA-QB-AA9O-06 2 211163267 211163267 G A MYL1 Silent p.L61L 0.15 TCGA-QB-AA9O-06 2 211481174 211481174 G A CPS1 Missense_Mutation p.E872K 0.34 tolerated(1) benign(0.004) TCGA-QB-AA9O-06 2 21225346 21225346 C T APOB Silent p.Q4316Q 0.17 TCGA-QB-AA9O-06 2 21231516 21231516 G A APOB Nonsense_Mutation p.Q2742* 0.25 TCGA-QB-AA9O-06 2 21239423 21239423 C T APOB Missense_Mutation p.G1074R 0.24 probably_damaging(0.999) TCGA-QB-AA9O-06 2 212530201 212530201 C T ERBB4 Missense_Mutation p.G573D 0.34 tolerated(0.06) probably_damaging(0.987) TCGA-QB-AA9O-06 2 212568920 212568920 C T ERBB4 Splice_Site p.X400_splice 0.28 TCGA-QB-AA9O-06 2 212989571 212989571 C T ERBB4 Missense_Mutation p.R47Q 0.21 tolerated(0.59) benign(0.001) TCGA-QB-AA9O-06 2 213872072 213872072 G A IKZF2 3'UTR 0.26 TCGA-QB-AA9O-06 2 215657031 215657031 A C BARD1 Missense_Mutation p.N118K 0.35 tolerated(0.78) benign(0.004) TCGA-QB-AA9O-06 2 219029637 219029637 C T CXCR1 Missense_Mutation p.V100M 0.38 tolerated(0.23) benign(0.043) TCGA-QB-AA9O-06 2 219249003 219249003 G A SLC11A1 Missense_Mutation p.G63E 0.37 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 2 219249004 219249004 G A SLC11A1 Silent p.G63G 0.36 TCGA-QB-AA9O-06 2 219296860 219296860 C T VIL1 Missense_Mutation p.T432I 0.24 deleterious(0) probably_damaging(0.995) TCGA-QB-AA9O-06 2 219296861 219296861 C T VIL1 Silent p.T432T 0.24 TCGA-QB-AA9O-06 2 219399417 219399417 G A USP37 Silent p.A231A 0.38 TCGA-QB-AA9O-06 2 219507966 219507966 C T ZNF142 Silent p.G1091G 0.28 TCGA-QB-AA9O-06 2 219613622 219613622 G A TTLL4 Silent p.E855E 0.25 TCGA-QB-AA9O-06 2 219875332 219875332 G A CCDC108 Missense_Mutation p.P1415L 0.37 tolerated(0.05) benign(0.16) TCGA-QB-AA9O-06 2 223160298 223160298 G A PAX3 Nonsense_Mutation p.R134* 0.24 TCGA-QB-AA9O-06 2 223339444 223339444 T C SGPP2 Missense_Mutation p.V126A 0.10 tolerated(0.41) benign(0.05) TCGA-QB-AA9O-06 2 227942791 227942791 C T COL4A4 Silent p.G602G 0.36 TCGA-QB-AA9O-06 2 228881246 228881246 C T SPHKAP Missense_Mutation p.E1442K 0.38 tolerated(0.1) benign(0.032) TCGA-QB-AA9O-06 2 228882637 228882637 G A SPHKAP Missense_Mutation p.S978F 0.38 deleterious(0.03) possibly_damaging(0.873) TCGA-QB-AA9O-06 2 228884167 228884167 G A SPHKAP Missense_Mutation p.S468F 0.25 tolerated(0.08) possibly_damaging(0.707) TCGA-QB-AA9O-06 2 231258147 231258147 C T SP140L Missense_Mutation p.P376S 0.15 tolerated(0.1) possibly_damaging(0.514) TCGA-QB-AA9O-06 2 231266056 231266056 C T SP140L Intron 0.27 TCGA-QB-AA9O-06 2 231927024 231927024 C T PSMD1 Silent p.S41S 0.28 TCGA-QB-AA9O-06 2 232602765 232602765 G A PDE6D Missense_Mutation p.R75C 0.43 deleterious(0.05) benign(0.123) TCGA-QB-AA9O-06 2 233677167 233677167 C T GIGYF2 Silent p.I712I 0.17 TCGA-QB-AA9O-06 2 234526916 234526916 C T UGT1A8 Missense_Mutation p.S188F 0.38 deleterious(0) possibly_damaging(0.734) TCGA-QB-AA9O-06 2 234669721 234669721 A T UGT1A8 Intron 0.36 TCGA-QB-AA9O-06 2 235951703 235951703 G A SH3BP4 Missense_Mutation p.E764K 0.15 deleterious(0.02) probably_damaging(0.964) TCGA-QB-AA9O-06 2 235962328 235962328 C G SH3BP4 Silent p.G920G 0.29 TCGA-QB-AA9O-06 2 235962329 235962329 C T SH3BP4 Silent p.L921L 0.29 TCGA-QB-AA9O-06 2 240969727 240969727 C T OR6B2 Silent p.V40V 0.20 TCGA-QB-AA9O-06 2 242274600 242274600 C T SEPT2 Missense_Mutation p.P64S 0.23 tolerated(0.25) possibly_damaging(0.859) TCGA-QB-AA9O-06 2 24345384 24345384 A T PFN4 Missense_Mutation p.L8M 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-QB-AA9O-06 2 24427209 24427209 G A ITSN2 Missense_Mutation p.P1614L 0.21 deleterious(0) unknown(0) TCGA-QB-AA9O-06 2 24927956 24927956 G A NCOA1 Silent p.V317V 0.67 TCGA-QB-AA9O-06 2 26203840 26203840 G A KIF3C Missense_Mutation p.P316L 0.42 probably_damaging(1) TCGA-QB-AA9O-06 2 26683833 26683833 C T OTOF Missense_Mutation p.E1867K 0.12 tolerated(0.64) benign(0.005) TCGA-QB-AA9O-06 2 26951297 26951297 G A KCNK3 Missense_Mutation p.G349E 0.62 tolerated_low_confidence(0.25) benign(0.079) TCGA-QB-AA9O-06 2 26951298 26951298 G A KCNK3 Silent p.G349G 0.62 TCGA-QB-AA9O-06 2 27700088 27700088 T C IFT172 Missense_Mutation p.I441V 0.20 tolerated(0.24) benign(0.045) TCGA-QB-AA9O-06 2 27717508 27717508 G A FNDC4 Silent p.L13L 0.58 TCGA-QB-AA9O-06 2 27824259 27824259 C T ZNF512 Missense_Mutation p.R207C 0.49 deleterious(0) possibly_damaging(0.53) TCGA-QB-AA9O-06 2 28719005 28719005 C T PLB1 Silent p.F8F 0.39 TCGA-QB-AA9O-06 2 30998799 30998799 G A CAPN13 Silent p.F128F 0.21 TCGA-QB-AA9O-06 2 31152284 31152284 G A GALNT14 Silent p.F381F 0.18 TCGA-QB-AA9O-06 2 31483602 31483602 C T EHD3 Silent p.I243I 0.30 TCGA-QB-AA9O-06 2 31598353 31598353 C T XDH Missense_Mutation p.D499N 0.22 tolerated(0.18) benign(0.013) TCGA-QB-AA9O-06 2 31605888 31605888 C T XDH Silent p.G339G 0.44 TCGA-QB-AA9O-06 2 32475024 32475024 C T NLRC4 Missense_Mutation p.E637K 0.22 tolerated(0.63) benign(0.05) TCGA-QB-AA9O-06 2 36749310 36749310 T A CRIM1 Missense_Mutation p.F761Y 0.24 tolerated(0.11) benign(0.013) TCGA-QB-AA9O-06 2 37304098 37304098 G A HEATR5B Missense_Mutation p.P135S 0.27 tolerated(0.41) benign(0.039) TCGA-QB-AA9O-06 2 43814015 43814015 G A THADA Silent p.S143S 0.15 TCGA-QB-AA9O-06 2 44571716 44571716 C T PREPL Missense_Mutation p.G118S 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-QB-AA9O-06 2 45235936 45235936 G A SIX2 Missense_Mutation p.A105V 0.23 deleterious(0) probably_damaging(0.994) TCGA-QB-AA9O-06 2 47606907 47606907 G A EPCAM Splice_Site p.X220_splice 0.31 TCGA-QB-AA9O-06 2 47606959 47606959 G A EPCAM Missense_Mutation p.G237R 0.26 deleterious(0.04) possibly_damaging(0.685) TCGA-QB-AA9O-06 2 48725841 48725841 G A PPP1R21 Silent p.K634K 0.20 TCGA-QB-AA9O-06 2 48808326 48808326 C T STON1-GTF2A1L Missense_Mutation p.P185L 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-QB-AA9O-06 2 48818958 48818958 G A STON1-GTF2A1L Silent p.Q699Q 0.42 TCGA-QB-AA9O-06 2 48872203 48872203 T A STON1-GTF2A1L Missense_Mutation p.F816Y 0.34 deleterious(0) possibly_damaging(0.644) TCGA-QB-AA9O-06 2 60688028 60688028 G A BCL11A Silent p.F673F 0.36 TCGA-QB-AA9O-06 2 61272952 61272952 C T PEX13 Silent p.F293F 0.35 TCGA-QB-AA9O-06 2 64193004 64193004 G A VPS54 Missense_Mutation p.R197C 0.27 deleterious(0) possibly_damaging(0.818) TCGA-QB-AA9O-06 2 69098400 69098400 G A BMP10 Missense_Mutation p.P31S 0.48 tolerated(0.71) benign(0.004) TCGA-QB-AA9O-06 2 71577224 71577224 C T ZNF638 Silent p.P380P 0.29 TCGA-QB-AA9O-06 2 71796966 71796966 G A DYSF Missense_Mutation p.D961N 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-QB-AA9O-06 2 73899570 73899570 C T ALMS1P RNA 0.43 TCGA-QB-AA9O-06 2 74750605 74750605 C T DQX1 Silent p.G292G 0.19 TCGA-QB-AA9O-06 2 74787293 74787293 G A M1AP Silent p.S469S 0.21 TCGA-QB-AA9O-06 2 85536381 85536381 C T TCF7L1 Silent p.A521A 0.19 TCGA-QB-AA9O-06 2 86067363 86067363 G A ST3GAL5 Silent p.T387T 0.44 TCGA-QB-AA9O-06 2 89117923 89117923 C T AC096579.13 RNA 0.47 TCGA-QB-AA9O-06 2 89309543 89309543 G A IGKV1-9 Missense_Mutation p.T96I 0.25 deleterious(0.01) possibly_damaging(0.82) TCGA-QB-AA9O-06 2 89309637 89309637 C T IGKV1-9 Missense_Mutation p.A65T 0.41 tolerated_low_confidence(0.08) benign(0.171) TCGA-QB-AA9O-06 2 90192950 90192950 G A IGKV1D-13 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.455) TCGA-QB-AA9O-06 2 95847300 95847300 T A ZNF2 Missense_Mutation p.S243T 0.49 tolerated(0.2) possibly_damaging(0.556) TCGA-QB-AA9O-06 2 96260829 96260829 G A TRIM43 Nonsense_Mutation p.W148* 0.10 TCGA-QB-AA9O-06 2 96260830 96260830 G A TRIM43 Nonsense_Mutation p.W148* 0.10 TCGA-QB-AA9O-06 2 98834348 98834348 G A VWA3B Missense_Mutation p.E626K 0.33 tolerated(1) benign(0.002) TCGA-QB-AA9O-06 3 100148673 100148673 C T LNP1 Missense_Mutation p.R34W 0.38 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 3 100494051 100494051 C T ABI3BP Missense_Mutation p.E777K 0.56 tolerated(0.21) benign(0.021) TCGA-QB-AA9O-06 3 101085447 101085447 G A SENP7 Missense_Mutation p.T382I 0.20 tolerated(0.12) benign(0.045) TCGA-QB-AA9O-06 3 102153888 102153888 C T ZPLD1 5'UTR 0.50 TCGA-QB-AA9O-06 3 10401739 10401739 G A ATP2B2 Silent p.F576F 0.21 TCGA-QB-AA9O-06 3 108156514 108156514 C T MYH15 Silent p.A1056A 0.45 TCGA-QB-AA9O-06 3 108181984 108181984 A C MYH15 Missense_Mutation p.F633C 0.29 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 3 108549539 108549539 C T TRAT1 Silent p.F10F 0.23 TCGA-QB-AA9O-06 3 108572656 108572656 G A TRAT1 Missense_Mutation p.E165K 0.17 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 3 109046627 109046627 C T DPPA4 3'UTR 0.38 TCGA-QB-AA9O-06 3 111263901 111263901 G A CD96 Missense_Mutation p.E24K 0.25 tolerated(0.13) benign(0.393) TCGA-QB-AA9O-06 3 111886104 111886104 G A SLC9C1 Missense_Mutation p.P1110S 0.41 tolerated(0.24) benign(0.015) TCGA-QB-AA9O-06 3 111988907 111988907 C T SLC9C1 Missense_Mutation p.G211R 0.35 tolerated(0.43) benign(0.175) TCGA-QB-AA9O-06 3 112538627 112538627 A C CD200R1L Missense_Mutation p.N265K 0.17 tolerated(0.21) benign(0.02) TCGA-QB-AA9O-06 3 113187016 113187016 G A SPICE1 Silent p.S375S 0.34 TCGA-QB-AA9O-06 3 118865527 118865527 G A C3orf30 Missense_Mutation p.G164D 0.30 tolerated(0.22) probably_damaging(0.996) TCGA-QB-AA9O-06 3 119134706 119134706 C T ARHGAP31 Silent p.R1310R 0.27 TCGA-QB-AA9O-06 3 119263558 119263558 T G CD80 Missense_Mutation p.E86A 0.41 tolerated(0.22) benign(0.028) TCGA-QB-AA9O-06 3 119263559 119263559 C T CD80 Missense_Mutation p.E86K 0.41 tolerated(0.99) benign(0.003) TCGA-QB-AA9O-06 3 120389342 120389342 G A HGD Missense_Mutation p.P72S 0.10 tolerated(0.06) possibly_damaging(0.808) TCGA-QB-AA9O-06 3 121097679 121097679 C T STXBP5L Nonsense_Mutation p.R789* 0.24 TCGA-QB-AA9O-06 3 124385349 124385349 C T KALRN Silent p.I224I 0.44 TCGA-QB-AA9O-06 3 124415035 124415035 G A AC080008.1 3'Flank 0.22 TCGA-QB-AA9O-06 3 125199106 125199106 A G SNX4 Silent p.L237L 0.22 TCGA-QB-AA9O-06 3 126224661 126224661 C T UROC1 Silent p.R232R 0.39 TCGA-QB-AA9O-06 3 126224662 126224662 C T UROC1 Missense_Mutation p.R232Q 0.39 tolerated(0.12) probably_damaging(0.988) TCGA-QB-AA9O-06 3 130159335 130159335 G A COL6A5 Silent p.Q2051Q 0.53 TCGA-QB-AA9O-06 3 132075758 132075758 C T ACPP Intron 0.35 TCGA-QB-AA9O-06 3 13522850 13522850 C T HDAC11 Missense_Mutation p.P36L 0.16 deleterious(0) probably_damaging(0.994) TCGA-QB-AA9O-06 3 137729220 137729220 G A CLDN18 Silent p.R51R 0.36 TCGA-QB-AA9O-06 3 137790574 137790574 C T DZIP1L Missense_Mutation p.R509K 0.22 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 3 138738940 138738940 G A PRR23B Silent p.P188P 0.18 TCGA-QB-AA9O-06 3 14163537 14163537 G C CHCHD4 5'UTR 0.50 TCGA-QB-AA9O-06 3 142408535 142408535 C T PLS1 Missense_Mutation p.P353S 0.41 deleterious(0.03) probably_damaging(0.941) TCGA-QB-AA9O-06 3 146177654 146177654 C T PLSCR2 Missense_Mutation p.G86E 0.20 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 3 148459632 148459632 C T AGTR1 Silent p.I270I 0.27 TCGA-QB-AA9O-06 3 150930964 150930964 A G P2RY14 3'UTR 0.23 TCGA-QB-AA9O-06 3 15497997 15497997 G A COLQ Silent p.F348F 0.55 TCGA-QB-AA9O-06 3 155200033 155200033 T G PLCH1 Missense_Mutation p.H1269P 0.28 tolerated_low_confidence(0.24) benign(0.001) TCGA-QB-AA9O-06 3 15520487 15520487 C T COLQ Silent p.R130R 0.22 TCGA-QB-AA9O-06 3 15602344 15602344 A G HACL1 3'UTR 0.20 TCGA-QB-AA9O-06 3 15687076 15687076 C T BTD 3'UTR 0.41 TCGA-QB-AA9O-06 3 158538074 158538074 C T MFSD1 Silent p.V323V 0.29 TCGA-QB-AA9O-06 3 167183177 167183177 G A SERPINI2 Missense_Mutation p.S228F 0.16 deleterious(0.02) benign(0.272) TCGA-QB-AA9O-06 3 167247000 167247000 C T WDR49 Missense_Mutation p.G397E 0.09 deleterious(0) possibly_damaging(0.886) TCGA-QB-AA9O-06 3 169644705 169644705 G A SAMD7 Missense_Mutation p.E219K 0.38 deleterious(0.04) benign(0.217) TCGA-QB-AA9O-06 3 169847089 169847089 G A PHC3 Missense_Mutation p.P391S 0.45 tolerated(0.12) possibly_damaging(0.699) TCGA-QB-AA9O-06 3 179437804 179437804 T C USP13 Silent p.D294D 0.23 TCGA-QB-AA9O-06 3 182554170 182554170 C T ATP11B Missense_Mutation p.P155L 0.26 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 3 182841907 182841907 G A LAMP3 Missense_Mutation p.R405C 0.17 tolerated(0.05) benign(0.305) TCGA-QB-AA9O-06 3 182871710 182871710 C T LAMP3 Silent p.S173S 0.21 TCGA-QB-AA9O-06 3 183689435 183689435 G A ABCC5 Silent p.P559P 0.22 TCGA-QB-AA9O-06 3 183963126 183963126 G A ALG3 Silent p.F155F 0.23 TCGA-QB-AA9O-06 3 184091271 184091271 G A THPO Missense_Mutation p.L110F 0.42 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 3 18458406 18458406 C T SATB1 Missense_Mutation p.A126T 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-QB-AA9O-06 3 186395043 186395043 C T HRG Missense_Mutation p.P317S 0.19 tolerated(0.1) possibly_damaging(0.641) TCGA-QB-AA9O-06 3 186457158 186457158 G A KNG1 Nonsense_Mutation p.W360* 0.26 TCGA-QB-AA9O-06 3 186917553 186917553 G A RTP1 Missense_Mutation p.E163K 0.29 tolerated(0.12) benign(0.094) TCGA-QB-AA9O-06 3 189526267 189526267 C T TP63 Silent p.F177F 0.58 TCGA-QB-AA9O-06 3 192980944 192980944 G A HRASLS Missense_Mutation p.E214K 0.52 tolerated(0.11) probably_damaging(0.991) TCGA-QB-AA9O-06 3 193364899 193364899 C T OPA1 Silent p.S582S 0.37 TCGA-QB-AA9O-06 3 194061897 194061897 G A CPN2 Missense_Mutation p.S512F 0.33 deleterious(0.01) benign(0.003) TCGA-QB-AA9O-06 3 194373548 194373548 G A LSG1 Silent p.S361S 0.30 TCGA-QB-AA9O-06 3 196083567 196083567 C G UBXN7 Missense_Mutation p.E487Q 0.23 tolerated(0.12) possibly_damaging(0.578) TCGA-QB-AA9O-06 3 24188215 24188215 G A THRB Silent p.C161C 0.42 TCGA-QB-AA9O-06 3 27332972 27332972 T A NEK10 Intron 0.15 TCGA-QB-AA9O-06 3 32932865 32932865 G A TRIM71 Silent p.R723R 0.21 TCGA-QB-AA9O-06 3 33194432 33194432 C T SUSD5 Silent p.G564G 0.41 TCGA-QB-AA9O-06 3 33870402 33870402 C T PDCD6IP Missense_Mutation p.H264Y 0.29 tolerated(0.93) benign(0.308) TCGA-QB-AA9O-06 3 367692 367692 C T CHL1 Missense_Mutation p.P48S 0.39 tolerated(0.05) benign(0.044) TCGA-QB-AA9O-06 3 36778909 36778909 G A DCLK3 Silent p.I414I 0.34 TCGA-QB-AA9O-06 3 37369314 37369314 C T GOLGA4 Silent p.I2001I 0.23 TCGA-QB-AA9O-06 3 38639228 38639228 C T SCN5A Missense_Mutation p.G752R 0.22 deleterious(0) probably_damaging(0.948) TCGA-QB-AA9O-06 3 38835404 38835404 C T SCN10A Missense_Mutation p.G33E 0.25 tolerated(0.19) benign(0) TCGA-QB-AA9O-06 3 3886520 3886520 G A LRRN1 Silent p.R65R 0.20 TCGA-QB-AA9O-06 3 38888485 38888485 C T SCN11A Silent p.R1692R 0.50 TCGA-QB-AA9O-06 3 38949484 38949484 C T SCN11A Missense_Mutation p.D477N 0.36 tolerated(0.08) benign(0.005) TCGA-QB-AA9O-06 3 39226079 39226079 C T XIRP1 Missense_Mutation p.E1620K 0.36 tolerated(0.07) benign(0.265) TCGA-QB-AA9O-06 3 39374404 39374404 G A CCR8 Nonsense_Mutation p.W194* 0.20 TCGA-QB-AA9O-06 3 41266560 41266560 C T CTNNB1 Silent p.P119P 0.16 TCGA-QB-AA9O-06 3 44636487 44636487 C T ZNF660 Missense_Mutation p.H268Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-QB-AA9O-06 3 44951742 44951742 G A TGM4 Silent p.R496R 0.41 TCGA-QB-AA9O-06 3 46401297 46401297 A T CCR2 Silent p.G357G 0.25 TCGA-QB-AA9O-06 3 46414444 46414444 G A CCR5 Silent p.S17S 0.37 TCGA-QB-AA9O-06 3 46477619 46477619 G A LTF 3'UTR 0.35 TCGA-QB-AA9O-06 3 4699833 4699833 G A ITPR1 Missense_Mutation p.R326Q 0.23 deleterious(0.01) benign(0.304) TCGA-QB-AA9O-06 3 4735266 4735266 G A ITPR1 Silent p.R1359R 0.45 TCGA-QB-AA9O-06 3 49094798 49094798 A T QRICH1 Missense_Mutation p.Y279N 0.39 deleterious(0) possibly_damaging(0.81) TCGA-QB-AA9O-06 3 49094799 49094799 A C QRICH1 Missense_Mutation p.S278R 0.38 deleterious(0) possibly_damaging(0.806) TCGA-QB-AA9O-06 3 49693633 49693633 T A BSN Missense_Mutation p.V2215D 0.52 unknown(0) TCGA-QB-AA9O-06 3 5022055 5022055 C T BHLHE40 Nonsense_Mutation p.Q74* 0.13 TCGA-QB-AA9O-06 3 52257409 52257409 C T TLR9 Missense_Mutation p.G462E 0.20 tolerated(0.86) benign(0.008) TCGA-QB-AA9O-06 3 52525473 52525473 C T NISCH Missense_Mutation p.P1283L 0.35 deleterious(0) probably_damaging(0.981) TCGA-QB-AA9O-06 3 52552339 52552339 G A STAB1 Silent p.R1591R 0.19 TCGA-QB-AA9O-06 3 53834328 53834328 C T CACNA1D Missense_Mutation p.S1679L 0.52 deleterious(0) probably_damaging(0.993) TCGA-QB-AA9O-06 3 53914130 53914130 G A ACTR8 Nonsense_Mutation p.Q44* 0.17 TCGA-QB-AA9O-06 3 55922428 55922428 G A ERC2 Silent p.I851I 0.69 TCGA-QB-AA9O-06 3 56207497 56207497 G A ERC2 Missense_Mutation p.L376F 0.22 deleterious(0.02) benign(0.02) TCGA-QB-AA9O-06 3 58190587 58190587 C T DNASE1L3 Silent p.K114K 0.38 TCGA-QB-AA9O-06 3 58849321 58849321 G A C3orf67 Missense_Mutation p.S394L 0.32 tolerated(1) benign(0.001) TCGA-QB-AA9O-06 3 64085399 64085399 G A PRICKLE2 Silent p.L621L 0.25 TCGA-QB-AA9O-06 3 64592734 64592734 C T ADAMTS9 Missense_Mutation p.G1126R 0.21 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 3 66449445 66449445 A G LRIG1 Missense_Mutation p.I394T 0.22 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 3 66457896 66457896 G A LRIG1 Silent p.L319L 0.48 TCGA-QB-AA9O-06 3 78701058 78701058 G A ROBO1 Missense_Mutation p.S879L 0.30 tolerated(0.3) benign(0.107) TCGA-QB-AA9O-06 3 81643104 81643104 G A GBE1 Missense_Mutation p.R355C 0.45 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 3 8794760 8794760 C T OXTR Missense_Mutation p.G358E 0.42 tolerated(0.75) benign(0.009) TCGA-QB-AA9O-06 3 88199187 88199188 - T C3orf38 5'UTR 0.20 TCGA-QB-AA9O-06 3 9767711 9767711 G A CPNE9 Silent p.T440T 0.27 TCGA-QB-AA9O-06 3 97887740 97887740 T C OR5H15 Missense_Mutation p.L66S 0.19 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 3 97983326 97983326 G A OR5H6 Nonsense_Mutation p.W66* 0.44 TCGA-QB-AA9O-06 4 101401125 101401125 C T EMCN Missense_Mutation p.E46K 0.54 tolerated(0.87) benign(0.027) TCGA-QB-AA9O-06 4 110790863 110790863 T G LRIT3 Missense_Mutation p.S320A 0.47 deleterious(0.01) benign(0.002) TCGA-QB-AA9O-06 4 121958082 121958082 C T NDNF Silent p.G348G 0.57 TCGA-QB-AA9O-06 4 138442500 138442500 G A PCDH18 Missense_Mutation p.R1031W 0.57 deleterious(0.02) possibly_damaging(0.517) TCGA-QB-AA9O-06 4 1388196 1388196 C T CRIPAK 5'UTR 0.50 TCGA-QB-AA9O-06 4 141463769 141463769 T A ELMOD2 Missense_Mutation p.L192H 0.66 deleterious(0) probably_damaging(0.989) TCGA-QB-AA9O-06 4 144918742 144918742 A T GYPB Missense_Mutation p.I74N 0.52 deleterious(0) benign(0.039) TCGA-QB-AA9O-06 4 148406777 148406777 G A EDNRA 5'UTR 0.70 TCGA-QB-AA9O-06 4 151791707 151791707 G A LRBA Missense_Mutation p.P807S 0.55 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 4 159526217 159526217 C T RXFP1 Intron 0.50 TCGA-QB-AA9O-06 4 159560424 159560424 G A RXFP1 Silent p.G352G 0.55 TCGA-QB-AA9O-06 4 173930333 173930333 G A GALNTL6 Missense_Mutation p.R459Q 0.59 tolerated(0.37) benign(0.037) TCGA-QB-AA9O-06 4 175709988 175709988 T A GLRA3 Nonsense_Mutation p.R60* 0.44 TCGA-QB-AA9O-06 4 176733410 176733410 G A GPM6A Intron 0.28 TCGA-QB-AA9O-06 4 177105852 177105852 C T SPATA4 3'UTR 0.38 TCGA-QB-AA9O-06 4 183267932 183267932 G A TENM3 Missense_Mutation p.E121K 0.79 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-QB-AA9O-06 4 186284538 186284538 G A SNX25 Splice_Site p.X815_splice 0.53 TCGA-QB-AA9O-06 4 188924165 188924165 C T ZFP42 Silent p.F68F 0.45 TCGA-QB-AA9O-06 4 20611762 20611762 G A SLIT2 Silent p.L1273L 0.44 TCGA-QB-AA9O-06 4 247869 247869 C T ZNF876P RNA 0.24 TCGA-QB-AA9O-06 4 25677810 25677810 G A SLC34A2 Silent p.P504P 0.35 TCGA-QB-AA9O-06 4 2673997 2673997 C T FAM193A Silent p.Y452Y 0.40 TCGA-QB-AA9O-06 4 2896357 2896357 C T ADD1 Silent p.L214L 0.39 TCGA-QB-AA9O-06 4 30725910 30725910 G A PCDH7 Missense_Mutation p.A956T 0.33 tolerated(0.33) possibly_damaging(0.763) TCGA-QB-AA9O-06 4 3432488 3432488 C T RGS12 Missense_Mutation p.S1307F 0.38 tolerated(0.08) benign(0.169) TCGA-QB-AA9O-06 4 3446634 3446634 G T HGFAC Missense_Mutation p.W310C 0.29 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 4 40099034 40099034 C T N4BP2 Missense_Mutation p.S25F 0.32 deleterious(0) probably_damaging(0.935) TCGA-QB-AA9O-06 4 40776319 40776319 C T NSUN7 Nonsense_Mutation p.R176* 0.29 TCGA-QB-AA9O-06 4 41648675 41648675 C T LIMCH1 Missense_Mutation p.S477F 0.29 deleterious(0.01) possibly_damaging(0.677) TCGA-QB-AA9O-06 4 41984990 41984990 C T DCAF4L1 Missense_Mutation p.P394L 0.40 deleterious_low_confidence(0.02) benign(0.101) TCGA-QB-AA9O-06 4 4198992 4198992 C T OTOP1 Silent p.G523G 0.52 TCGA-QB-AA9O-06 4 42065032 42065032 C T SLC30A9 Missense_Mutation p.S309F 0.38 deleterious(0.01) benign(0.016) TCGA-QB-AA9O-06 4 42592887 42592887 C T ATP8A1 Silent p.E155E 0.32 TCGA-QB-AA9O-06 4 43022402 43022402 C T GRXCR1 Missense_Mutation p.S220L 0.25 deleterious(0.02) benign(0.011) TCGA-QB-AA9O-06 4 46388122 46388122 A G GABRA2 Silent p.G52G 0.32 TCGA-QB-AA9O-06 4 46736922 46736922 T C COX7B2 3'UTR 0.26 TCGA-QB-AA9O-06 4 47537977 47537977 A G ATP10D Silent p.L314L 0.39 TCGA-QB-AA9O-06 4 48490897 48490897 T C SLC10A4 Missense_Mutation p.Y419H 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-QB-AA9O-06 4 48530220 48530220 A T FRYL Missense_Mutation p.V2346D 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-QB-AA9O-06 4 69433921 69433921 G A UGT2B17 Silent p.F94F 0.60 TCGA-QB-AA9O-06 4 69434204 69434204 C T UGT2B17 5'UTR 0.27 TCGA-QB-AA9O-06 4 69535705 69535705 C T UGT2B15 Missense_Mutation p.R211K 0.63 deleterious(0.01) possibly_damaging(0.533) TCGA-QB-AA9O-06 4 70504994 70504994 T G UGT2A2 Missense_Mutation p.K122T 0.33 deleterious(0.03) benign(0.139) TCGA-QB-AA9O-06 4 70713506 70713506 A G SULT1E1 Silent p.P167P 0.63 TCGA-QB-AA9O-06 4 7533320 7533320 C T SORCS2 Silent p.I204I 0.32 TCGA-QB-AA9O-06 4 76407679 76407679 A G RCHY1 3'UTR 0.56 TCGA-QB-AA9O-06 4 7655886 7655886 A T SORCS2 Missense_Mutation p.K280I 0.16 deleterious(0) benign(0.261) TCGA-QB-AA9O-06 4 77003362 77003362 C T ART3 Missense_Mutation p.P152L 0.71 deleterious(0.01) probably_damaging(0.978) TCGA-QB-AA9O-06 4 80327983 80327983 C T GK2 Missense_Mutation p.G458R 0.55 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 4 80329163 80329163 G A GK2 Silent p.V64V 0.48 TCGA-QB-AA9O-06 4 81207618 81207618 G A FGF5 Missense_Mutation p.R200Q 0.54 deleterious(0.03) probably_damaging(0.99) TCGA-QB-AA9O-06 4 8221111 8221111 A G SH3TC1 Silent p.E322E 0.33 TCGA-QB-AA9O-06 4 87967346 87967346 C T AFF1 Nonsense_Mutation p.R23* 0.56 TCGA-QB-AA9O-06 4 88533298 88533298 C T DSPP Silent p.S31S 0.27 TCGA-QB-AA9O-06 4 90169804 90169804 C T GPRIN3 Silent p.G486G 0.58 TCGA-QB-AA9O-06 4 93511314 93511314 G A GRID2 Missense_Mutation p.D41N 0.55 deleterious(0.01) benign(0.419) TCGA-QB-AA9O-06 5 101724504 101724504 A G SLCO6A1 Silent p.F635F 0.14 TCGA-QB-AA9O-06 5 102262314 102262314 G A PAM Silent p.E156E 0.14 TCGA-QB-AA9O-06 5 108680412 108680412 G A PJA2 Missense_Mutation p.H625Y 0.35 tolerated(0.16) benign(0.118) TCGA-QB-AA9O-06 5 11022938 11022938 A T CTNND2 Nonsense_Mutation p.L981* 0.42 TCGA-QB-AA9O-06 5 11565098 11565098 C T CTNND2 Missense_Mutation p.R82Q 0.48 deleterious(0) possibly_damaging(0.768) TCGA-QB-AA9O-06 5 11732338 11732338 C T CTNND2 Silent p.T28T 0.33 TCGA-QB-AA9O-06 5 121786681 121786681 C T SNCAIP Silent p.S713S 0.24 TCGA-QB-AA9O-06 5 122272456 122272456 G A SNX24 Missense_Mutation p.G30R 0.21 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 5 128320919 128320919 C T SLC27A6 Missense_Mutation p.S192L 0.37 deleterious(0) possibly_damaging(0.791) TCGA-QB-AA9O-06 5 128984648 128984648 G C ADAMTS19 Missense_Mutation p.A715P 0.32 tolerated(0.16) benign(0.208) TCGA-QB-AA9O-06 5 131726481 131726481 C T SLC22A5 Silent p.V384V 0.48 TCGA-QB-AA9O-06 5 131994004 131994004 C T IL13 Silent p.A42A 0.36 TCGA-QB-AA9O-06 5 132158616 132158616 G A SHROOM1 Missense_Mutation p.R811C 0.32 deleterious(0) probably_damaging(0.971) TCGA-QB-AA9O-06 5 134781976 134781976 C T TIFAB 3'UTR 0.17 TCGA-QB-AA9O-06 5 135567069 135567069 C T TRPC7 Missense_Mutation p.M671I 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-QB-AA9O-06 5 135692946 135692946 C T TRPC7 Missense_Mutation p.E44K 0.36 deleterious(0) benign(0.417) TCGA-QB-AA9O-06 5 137034065 137034065 C T KLHL3 Missense_Mutation p.E92K 0.35 tolerated(0.41) benign(0.034) TCGA-QB-AA9O-06 5 137507087 137507087 G A BRD8 Nonsense_Mutation p.Q67* 0.49 TCGA-QB-AA9O-06 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.25 possibly_damaging(0.898) TCGA-QB-AA9O-06 5 13759006 13759006 C T DNAH5 Silent p.A3456A 0.36 TCGA-QB-AA9O-06 5 13766175 13766175 C T DNAH5 Silent p.V3337V 0.34 TCGA-QB-AA9O-06 5 137682515 137682515 C T FAM53C Missense_Mutation p.S349F 0.42 tolerated(0.7) benign(0.011) TCGA-QB-AA9O-06 5 13823405 13823405 A G DNAH5 Silent p.G2218G 0.36 TCGA-QB-AA9O-06 5 13845050 13845050 G A DNAH5 Missense_Mutation p.P1723S 0.38 benign(0.008) TCGA-QB-AA9O-06 5 138764272 138764272 G A DNAJC18 Missense_Mutation p.H110Y 0.30 deleterious(0) probably_damaging(0.978) TCGA-QB-AA9O-06 5 13876855 13876855 C T DNAH5 Missense_Mutation p.E1112K 0.36 benign(0.292) TCGA-QB-AA9O-06 5 13911527 13911527 C T DNAH5 Missense_Mutation p.E538K 0.38 possibly_damaging(0.635) TCGA-QB-AA9O-06 5 13920624 13920624 C T DNAH5 Missense_Mutation p.D255N 0.34 benign(0.004) TCGA-QB-AA9O-06 5 139216414 139216414 G A PSD2 Silent p.R474R 0.33 TCGA-QB-AA9O-06 5 139680044 139680044 T C PFDN1 Missense_Mutation p.T53A 0.26 tolerated(0.46) benign(0.014) TCGA-QB-AA9O-06 5 139917749 139917749 C T ANKHD1 Missense_Mutation p.S2436F 0.43 probably_damaging(0.993) TCGA-QB-AA9O-06 5 140166069 140166069 G A PCDHA1 Missense_Mutation p.R65Q 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.858) TCGA-QB-AA9O-06 5 140166070 140166070 G T PCDHA1 Silent p.R65R 0.23 TCGA-QB-AA9O-06 5 140166843 140166843 T C PCDHA1 Missense_Mutation p.V323A 0.31 tolerated_low_confidence(0.11) benign(0.003) TCGA-QB-AA9O-06 5 140174829 140174829 G A PCDHA2 Missense_Mutation p.E94K 0.38 deleterious_low_confidence(0.01) benign(0.208) TCGA-QB-AA9O-06 5 140182629 140182629 G A PCDHA3 Missense_Mutation p.G616D 0.38 tolerated_low_confidence(0.12) benign(0.182) TCGA-QB-AA9O-06 5 140202425 140202425 C T PCDHA5 Silent p.F355F 0.33 TCGA-QB-AA9O-06 5 140307828 140307828 G A PCDHAC1 Missense_Mutation p.E451K 0.31 tolerated(0.09) benign(0.424) TCGA-QB-AA9O-06 5 140474589 140474589 G A PCDHB2 Missense_Mutation p.G72E 0.24 tolerated_low_confidence(0.08) benign(0.043) TCGA-QB-AA9O-06 5 140474783 140474783 G A PCDHB2 Missense_Mutation p.D137N 0.14 tolerated_low_confidence(0.12) benign(0.039) TCGA-QB-AA9O-06 5 140482329 140482329 C T PCDHB3 Missense_Mutation p.S699L 0.22 deleterious_low_confidence(0) benign(0.097) TCGA-QB-AA9O-06 5 140553729 140553729 C T PCDHB7 Missense_Mutation p.T438I 0.25 deleterious_low_confidence(0.04) benign(0.078) TCGA-QB-AA9O-06 5 140554846 140554846 G A PCDHB7 3'UTR 0.14 TCGA-QB-AA9O-06 5 140559386 140559386 G A PCDHB8 Missense_Mutation p.V591M 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-QB-AA9O-06 5 140588629 140588629 G A PCDHB12 Silent p.K50K 0.45 TCGA-QB-AA9O-06 5 140590324 140590324 C T PCDHB12 Silent p.F615F 0.32 TCGA-QB-AA9O-06 5 140590529 140590529 G A PCDHB12 Missense_Mutation p.D684N 0.28 deleterious_low_confidence(0.04) benign(0.176) TCGA-QB-AA9O-06 5 140719925 140719925 G A PCDHGA2 Missense_Mutation p.E463K 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-QB-AA9O-06 5 140744269 140744269 C T PCDHGA5 Silent p.I124I 0.38 TCGA-QB-AA9O-06 5 140755344 140755344 C T PCDHGA6 Missense_Mutation p.P565L 0.31 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-QB-AA9O-06 5 140755345 140755345 C T PCDHGA6 Silent p.P565P 0.31 TCGA-QB-AA9O-06 5 140769023 140769023 C T PCDHGB4 Silent p.R524R 0.41 TCGA-QB-AA9O-06 5 140856634 140856634 C T PCDHGC3 Silent p.L317L 0.48 TCGA-QB-AA9O-06 5 140953164 140953164 G A DIAPH1 Silent p.P751P 0.44 TCGA-QB-AA9O-06 5 141334619 141334619 C T PCDH12 Missense_Mutation p.R933Q 0.36 deleterious(0.02) possibly_damaging(0.629) TCGA-QB-AA9O-06 5 14287164 14287164 G T TRIO Nonsense_Mutation p.E178* 0.35 TCGA-QB-AA9O-06 5 143853360 143853360 C T KCTD16 Missense_Mutation p.P324S 0.45 deleterious(0) probably_damaging(0.996) TCGA-QB-AA9O-06 5 145317683 145317683 G A SH3RF2 Silent p.P64P 0.28 TCGA-QB-AA9O-06 5 147012320 147012320 T A JAKMIP2 Missense_Mutation p.N567Y 0.45 deleterious(0.01) benign(0.264) TCGA-QB-AA9O-06 5 147258387 147258387 C T SCGB3A2 Silent p.F7F 0.36 TCGA-QB-AA9O-06 5 147516688 147516688 G A SPINK5 3'UTR 0.39 TCGA-QB-AA9O-06 5 147781989 147781989 C T FBXO38 Missense_Mutation p.R169C 0.31 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 5 148996283 148996283 G A ARHGEF37 Silent p.Q204Q 0.33 TCGA-QB-AA9O-06 5 151231167 151231167 T G GLRA1 Splice_Site p.X233_splice 0.56 TCGA-QB-AA9O-06 5 19591224 19591224 C T CDH18 Missense_Mutation p.G314E 0.32 tolerated(0.53) possibly_damaging(0.52) TCGA-QB-AA9O-06 5 31313500 31313500 G A CDH6 Silent p.S443S 0.26 TCGA-QB-AA9O-06 5 31317490 31317490 G A CDH6 Silent p.Q507Q 0.40 TCGA-QB-AA9O-06 5 31323142 31323142 C T CDH6 Silent p.P700P 0.35 TCGA-QB-AA9O-06 5 31323206 31323206 G A CDH6 Missense_Mutation p.E722K 0.30 deleterious(0) possibly_damaging(0.482) TCGA-QB-AA9O-06 5 32789514 32789514 A T AC026703.1 Missense_Mutation p.R3W 0.30 possibly_damaging(0.827) TCGA-QB-AA9O-06 5 33984366 33984366 G A SLC45A2 Missense_Mutation p.T108I 0.31 deleterious(0.04) benign(0.214) TCGA-QB-AA9O-06 5 35875626 35875626 C T IL7R Silent p.I271I 0.49 TCGA-QB-AA9O-06 5 35954254 35954254 C T UGT3A1 3'UTR 0.42 TCGA-QB-AA9O-06 5 35954525 35954525 G A UGT3A1 Missense_Mutation p.P451S 0.45 deleterious(0.01) possibly_damaging(0.895) TCGA-QB-AA9O-06 5 35957389 35957389 C T UGT3A1 Missense_Mutation p.G326R 0.25 tolerated(0.2) probably_damaging(1) TCGA-QB-AA9O-06 5 36049357 36049357 C T UGT3A2 Silent p.G159G 0.40 TCGA-QB-AA9O-06 5 36301502 36301502 C T RANBP3L Missense_Mutation p.R6K 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.505) TCGA-QB-AA9O-06 5 37752596 37752596 C T WDR70 Missense_Mutation p.P629L 0.31 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 5 38451516 38451516 C T EGFLAM Silent p.S889S 0.22 TCGA-QB-AA9O-06 5 38510626 38510626 C T LIFR Missense_Mutation p.G311R 0.32 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 5 38884059 38884059 G A OSMR Silent p.G183G 0.28 TCGA-QB-AA9O-06 5 38885518 38885518 G A OSMR Nonsense_Mutation p.W257* 0.41 TCGA-QB-AA9O-06 5 38959419 38959419 G A RICTOR Missense_Mutation p.L686F 0.12 deleterious(0) probably_damaging(0.976) TCGA-QB-AA9O-06 5 40852584 40852584 C T CARD6 Silent p.L384L 0.44 TCGA-QB-AA9O-06 5 40955600 40955600 G A C7 Missense_Mutation p.R402Q 0.33 tolerated(0.09) benign(0.135) TCGA-QB-AA9O-06 5 40981538 40981538 G A C7 Missense_Mutation p.E799K 0.16 tolerated(0.21) benign(0.004) TCGA-QB-AA9O-06 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.25 deleterious(0.03) probably_damaging(0.944) TCGA-QB-AA9O-06 5 41061770 41061770 G A MROH2B Missense_Mutation p.P173S 0.40 tolerated(0.08) probably_damaging(0.943) TCGA-QB-AA9O-06 5 41159266 41159266 G A C6 Missense_Mutation p.P592S 0.23 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.30 TCGA-QB-AA9O-06 5 42711432 42711432 T A GHR Missense_Mutation p.Y248N 0.16 deleterious(0.02) possibly_damaging(0.765) TCGA-QB-AA9O-06 5 5465184 5465184 A T KIAA0947 Nonsense_Mutation p.K1913* 0.21 TCGA-QB-AA9O-06 5 5466589 5466589 T C KIAA0947 Missense_Mutation p.L2012S 0.40 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 5 55155334 55155334 C T IL31RA Intron 0.47 TCGA-QB-AA9O-06 5 57790700 57790700 G A GAPT Missense_Mutation p.E113K 0.54 deleterious(0) probably_damaging(0.945) TCGA-QB-AA9O-06 5 57790796 57790796 C T GAPT Missense_Mutation p.P145S 0.68 tolerated(0.13) benign(0.128) TCGA-QB-AA9O-06 5 63871722 63871722 C T RGS7BP Missense_Mutation p.H152Y 0.53 deleterious_low_confidence(0) unknown(0) TCGA-QB-AA9O-06 5 66398392 66398392 C T MAST4 Missense_Mutation p.H367Y 0.47 benign(0.27) TCGA-QB-AA9O-06 5 7827095 7827095 A G ADCY2 3'UTR 0.33 TCGA-QB-AA9O-06 5 79031979 79031979 C T CMYA5 Missense_Mutation p.S2464L 0.41 benign(0.098) TCGA-QB-AA9O-06 5 79855716 79855716 G A ANKRD34B Silent p.D41D 0.34 TCGA-QB-AA9O-06 5 82815724 82815724 G A VCAN Silent p.K533K 0.50 TCGA-QB-AA9O-06 5 82834415 82834415 G A VCAN Missense_Mutation p.E1865K 0.38 deleterious(0.02) probably_damaging(0.958) TCGA-QB-AA9O-06 5 843722 843722 C A ZDHHC11 Missense_Mutation p.R207S 0.25 tolerated(0.5) benign(0.007) TCGA-QB-AA9O-06 5 89949103 89949103 C T GPR98 Missense_Mutation p.P1238S 0.44 possibly_damaging(0.857) TCGA-QB-AA9O-06 5 89949639 89949639 G A GPR98 Missense_Mutation p.M1416I 0.54 benign(0.322) TCGA-QB-AA9O-06 5 89988548 89988548 C T GPR98 Missense_Mutation p.R2360C 0.43 probably_damaging(0.973) TCGA-QB-AA9O-06 5 90020652 90020652 G A GPR98 Missense_Mutation p.G3251E 0.39 probably_damaging(0.972) TCGA-QB-AA9O-06 5 90049397 90049397 T G GPR98 Missense_Mutation p.F3710V 0.32 possibly_damaging(0.879) TCGA-QB-AA9O-06 5 90136463 90136463 G A GPR98 Silent p.V5560V 0.53 TCGA-QB-AA9O-06 5 908513 908513 C T TRIP13 Missense_Mutation p.T268I 0.34 deleterious(0) benign(0.185) TCGA-QB-AA9O-06 5 94253657 94253657 G A MCTP1 Missense_Mutation p.P432S 0.39 tolerated_low_confidence(0.7) benign(0.062) TCGA-QB-AA9O-06 5 94278119 94278119 C T MCTP1 Missense_Mutation p.D332N 0.35 tolerated(0.1) probably_damaging(1) TCGA-QB-AA9O-06 5 95242418 95242418 T C ELL2 Missense_Mutation p.T184A 0.23 deleterious(0.03) benign(0.058) TCGA-QB-AA9O-06 5 96329651 96329651 C T LNPEP Silent p.I461I 0.42 TCGA-QB-AA9O-06 5 96503201 96503201 G A RIOK2 Missense_Mutation p.S456L 0.43 deleterious(0.02) benign(0.021) TCGA-QB-AA9O-06 6 100841478 100841478 C T SIM1 Silent p.G485G 0.21 TCGA-QB-AA9O-06 6 10894199 10894199 C T SYCP2L Missense_Mutation p.R60C 0.20 deleterious(0) possibly_damaging(0.711) TCGA-QB-AA9O-06 6 111643851 111643851 C T REV3L Missense_Mutation p.E2758K 0.44 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 6 119243216 119243216 A G MCM9 Silent p.S219S 0.24 TCGA-QB-AA9O-06 6 12122785 12122785 G A HIVEP1 Silent p.L919L 0.26 TCGA-QB-AA9O-06 6 125232112 125232112 C T RP11-510H23.1 RNA 0.59 TCGA-QB-AA9O-06 6 128150891 128150891 C T THEMIS Missense_Mutation p.E147K 0.26 tolerated(0.65) benign(0.005) TCGA-QB-AA9O-06 6 130535541 130535541 C T SAMD3 Silent p.L70L 0.20 TCGA-QB-AA9O-06 6 130761675 130761675 G A TMEM200A Silent p.E36E 0.22 TCGA-QB-AA9O-06 6 131602831 131602831 C T AKAP7 Nonsense_Mutation p.Q338* 0.40 TCGA-QB-AA9O-06 6 131904927 131904927 G A ARG1 Missense_Mutation p.G291E 0.18 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 6 131914229 131914229 G A MED23 Silent p.L1105L 0.22 TCGA-QB-AA9O-06 6 131917194 131917194 A C MED23 Missense_Mutation p.F963C 0.28 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 6 132054815 132054815 T G ENPP3 Missense_Mutation p.F681V 0.38 tolerated(0.5) benign(0.034) TCGA-QB-AA9O-06 6 132938453 132938453 C T TAAR2 Missense_Mutation p.D298N 0.37 tolerated(0.28) benign(0.255) TCGA-QB-AA9O-06 6 132939145 132939145 G A TAAR2 Missense_Mutation p.S67F 0.35 deleterious(0) probably_damaging(0.994) TCGA-QB-AA9O-06 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.11 tolerated(0.18) benign(0.001) TCGA-QB-AA9O-06 6 133073709 133073709 C T VNN2 Missense_Mutation p.M239I 0.22 deleterious(0.01) benign(0.169) TCGA-QB-AA9O-06 6 133834120 133834120 C T EYA4 Missense_Mutation p.A482V 0.21 deleterious(0.03) possibly_damaging(0.834) TCGA-QB-AA9O-06 6 133844233 133844233 G A EYA4 Silent p.L552L 0.31 TCGA-QB-AA9O-06 6 138645252 138645252 C T KIAA1244 Silent p.A1654A 0.33 TCGA-QB-AA9O-06 6 139564334 139564334 C T TXLNB Missense_Mutation p.E462K 0.19 tolerated(1) benign(0) TCGA-QB-AA9O-06 6 139591725 139591725 G A TXLNB Silent p.L185L 0.27 TCGA-QB-AA9O-06 6 150210601 150210601 C T RAET1E Missense_Mutation p.E169K 0.23 deleterious(0.04) possibly_damaging(0.842) TCGA-QB-AA9O-06 6 150385739 150385739 C T ULBP3 3'UTR 0.18 TCGA-QB-AA9O-06 6 151669861 151669861 C T AKAP12 Missense_Mutation p.S112F 0.47 deleterious(0.02) probably_damaging(0.937) TCGA-QB-AA9O-06 6 152728206 152728206 T A SYNE1 Missense_Mutation p.E2222D 0.27 benign(0.005) TCGA-QB-AA9O-06 6 152737732 152737732 G A SYNE1 Missense_Mutation p.S1947F 0.38 possibly_damaging(0.775) TCGA-QB-AA9O-06 6 152751656 152751656 A T SYNE1 Missense_Mutation p.H1550Q 0.22 benign(0.002) TCGA-QB-AA9O-06 6 152826502 152826502 C T SYNE1 Silent p.G204G 0.25 TCGA-QB-AA9O-06 6 152831399 152831399 C T SYNE1 Silent p.R170R 0.42 TCGA-QB-AA9O-06 6 15520489 15520489 C T JARID2 3'UTR 0.24 TCGA-QB-AA9O-06 6 161020680 161020680 C T LPA Missense_Mutation p.E1047K 0.34 tolerated(0.32) benign(0.16) TCGA-QB-AA9O-06 6 161159610 161159610 G A PLG Missense_Mutation p.E615K 0.21 tolerated(0.11) benign(0.016) TCGA-QB-AA9O-06 6 161160103 161160103 C T PLG Silent p.S627S 0.21 TCGA-QB-AA9O-06 6 16327639 16327639 G A ATXN1 Silent p.V301V 0.36 TCGA-QB-AA9O-06 6 166571913 166571913 G A T Silent p.L400L 0.25 TCGA-QB-AA9O-06 6 169632766 169632766 T G THBS2 Missense_Mutation p.E642A 0.19 tolerated(0.15) benign(0.082) TCGA-QB-AA9O-06 6 170657236 170657236 T A FAM120B Intron 0.22 TCGA-QB-AA9O-06 6 24146197 24146197 C T NRSN1 3'UTR 0.27 TCGA-QB-AA9O-06 6 24460508 24460508 G A GPLD1 Missense_Mutation p.P336L 0.28 tolerated(0.11) benign(0.012) TCGA-QB-AA9O-06 6 25916022 25916022 G A SLC17A2 Silent p.F335F 0.48 TCGA-QB-AA9O-06 6 2623822 2623822 A C C6orf195 Missense_Mutation p.C79G 0.40 deleterious_low_confidence(0) benign(0.402) TCGA-QB-AA9O-06 6 26413983 26413983 A G BTN3A1 3'UTR 0.32 TCGA-QB-AA9O-06 6 2689093 2689093 G A MYLK4 Silent p.I111I 0.39 TCGA-QB-AA9O-06 6 27419875 27419875 G C ZNF184 Missense_Mutation p.S488C 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-QB-AA9O-06 6 2770419 2770419 T C WRNIP1 Silent p.P360P 0.09 TCGA-QB-AA9O-06 6 2770428 2770428 G T WRNIP1 Missense_Mutation p.Q363H 0.08 tolerated(0.14) probably_damaging(0.954) TCGA-QB-AA9O-06 6 2770497 2770497 G T WRNIP1 Silent p.V386V 0.10 TCGA-QB-AA9O-06 6 29274983 29274983 C T OR14J1 Missense_Mutation p.H173Y 0.35 deleterious(0.03) benign(0.062) TCGA-QB-AA9O-06 6 29323644 29323644 G A OR5V1 Missense_Mutation p.S110L 0.44 deleterious(0) benign(0.049) TCGA-QB-AA9O-06 6 29639300 29639300 G A MOG 3'UTR 0.31 TCGA-QB-AA9O-06 6 30309925 30309925 C T TRIM39 Silent p.T482T 0.23 TCGA-QB-AA9O-06 6 30529704 30529704 G C PRR3 Missense_Mutation p.R88T 0.22 deleterious_low_confidence(0.01) benign(0.014) TCGA-QB-AA9O-06 6 30881670 30881670 C T GTF2H4 Silent p.F433F 0.27 TCGA-QB-AA9O-06 6 31105999 31105999 G A PSORS1C2 Missense_Mutation p.P47L 0.18 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-QB-AA9O-06 6 31475262 31475262 C T MICB Silent p.L326L 0.18 TCGA-QB-AA9O-06 6 31855423 31855423 G A EHMT2 Missense_Mutation p.R648C 0.27 deleterious(0) possibly_damaging(0.694) TCGA-QB-AA9O-06 6 31963519 31963519 C T C4A Missense_Mutation p.R1060W 0.19 deleterious(0) probably_damaging(0.992) TCGA-QB-AA9O-06 6 32169049 32169049 C A NOTCH4 Missense_Mutation p.W1328C 0.11 tolerated(0.18) possibly_damaging(0.855) TCGA-QB-AA9O-06 6 32169050 32169050 C T NOTCH4 Nonsense_Mutation p.W1328* 0.10 TCGA-QB-AA9O-06 6 33383042 33383042 A G PHF1 Missense_Mutation p.N424D 0.27 tolerated(0.29) benign(0.023) TCGA-QB-AA9O-06 6 33693352 33693352 G A IP6K3 Missense_Mutation p.P211S 0.12 deleterious(0) probably_damaging(0.987) TCGA-QB-AA9O-06 6 34506066 34506066 G A SPDEF Silent p.F331F 0.35 TCGA-QB-AA9O-06 6 35289218 35289218 C T DEF6 3'UTR 0.36 TCGA-QB-AA9O-06 6 35473947 35473947 C T TULP1 Missense_Mutation p.E278K 0.35 tolerated(0.08) benign(0.071) TCGA-QB-AA9O-06 6 35928840 35928840 G A SLC26A8 Silent p.L500L 0.18 TCGA-QB-AA9O-06 6 36275474 36275474 C T PNPLA1 Missense_Mutation p.P527L 0.24 tolerated_low_confidence(0.1) benign(0.004) TCGA-QB-AA9O-06 6 36297885 36297885 C T C6orf222 Missense_Mutation p.E195K 0.19 deleterious(0.01) benign(0.024) TCGA-QB-AA9O-06 6 36891292 36891292 G A C6orf89 3'UTR 0.38 TCGA-QB-AA9O-06 6 36995307 36995307 C T FGD2 Missense_Mutation p.P570S 0.25 tolerated(0.06) possibly_damaging(0.728) TCGA-QB-AA9O-06 6 39040713 39040713 C T GLP1R Silent p.F195F 0.12 TCGA-QB-AA9O-06 6 39159381 39159381 C T KCNK5 Missense_Mutation p.R262Q 0.27 tolerated(0.1) benign(0.277) TCGA-QB-AA9O-06 6 40399725 40399725 G A LRFN2 Silent p.I376I 0.13 TCGA-QB-AA9O-06 6 40400145 40400145 G A LRFN2 Silent p.S236S 0.16 TCGA-QB-AA9O-06 6 40400569 40400569 G A LRFN2 Missense_Mutation p.S95F 0.27 deleterious(0) probably_damaging(0.953) TCGA-QB-AA9O-06 6 41000842 41000842 G A UNC5CL Missense_Mutation p.R244C 0.26 deleterious(0.01) benign(0.014) TCGA-QB-AA9O-06 6 41309748 41309748 C T NCR2 Intron 0.30 TCGA-QB-AA9O-06 6 41712534 41712534 C T PGC Silent p.K24K 0.19 TCGA-QB-AA9O-06 6 41767594 41767594 A T USP49 Silent p.V548V 0.14 TCGA-QB-AA9O-06 6 42227450 42227450 C T TRERF1 Silent p.R632R 0.30 TCGA-QB-AA9O-06 6 42231021 42231021 C T TRERF1 Intron 0.31 TCGA-QB-AA9O-06 6 42627465 42627465 T A UBR2 Missense_Mutation p.F1105Y 0.43 tolerated(0.22) benign(0) TCGA-QB-AA9O-06 6 46111239 46111239 C T ENPP4 Silent p.I408I 0.41 TCGA-QB-AA9O-06 6 49753959 49753959 C T PGK2 Silent p.L314L 0.22 TCGA-QB-AA9O-06 6 51889935 51889935 C T PKHD1 Missense_Mutation p.G1558E 0.55 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 6 53371796 53371796 A G GCLC Missense_Mutation p.V371A 0.45 deleterious(0) benign(0.392) TCGA-QB-AA9O-06 6 53784317 53784317 C T LRRC1 Silent p.S376S 0.29 TCGA-QB-AA9O-06 6 53986325 53986325 G A MLIP Silent p.Q48Q 0.19 TCGA-QB-AA9O-06 6 55198586 55198586 C T GFRAL Missense_Mutation p.P54S 0.23 deleterious(0.04) benign(0.146) TCGA-QB-AA9O-06 6 55659161 55659161 A T BMP5 Missense_Mutation p.F250I 0.27 deleterious(0.01) possibly_damaging(0.904) TCGA-QB-AA9O-06 6 55739429 55739429 G A BMP5 Missense_Mutation p.L79F 0.22 deleterious(0) probably_damaging(0.99) TCGA-QB-AA9O-06 6 56324988 56324988 G A DST Missense_Mutation p.S5065F 0.49 probably_damaging(0.991) TCGA-QB-AA9O-06 6 57512739 57512739 C T PRIM2 3'UTR 0.13 TCGA-QB-AA9O-06 6 62604719 62604719 G A KHDRBS2 Missense_Mutation p.P211S 0.42 tolerated(0.33) benign(0.021) TCGA-QB-AA9O-06 6 656526 656526 C T HUS1B Missense_Mutation p.R140K 0.25 tolerated(0.4) benign(0.171) TCGA-QB-AA9O-06 6 69665943 69665943 C T BAI3 Missense_Mutation p.S408L 0.66 tolerated(0.12) benign(0.058) TCGA-QB-AA9O-06 6 71570081 71570081 C T SMAP1 3'UTR 0.38 TCGA-QB-AA9O-06 6 71603936 71603936 G A B3GAT2 Silent p.L211L 0.35 TCGA-QB-AA9O-06 6 72889602 72889602 G A RIMS1 Missense_Mutation p.E266K 0.40 deleterious(0.03) probably_damaging(0.991) TCGA-QB-AA9O-06 6 74183373 74183373 T A MTO1 Missense_Mutation p.I274N 0.26 deleterious(0) probably_damaging(0.978) TCGA-QB-AA9O-06 6 7569424 7569424 C T DSP Silent p.I475I 0.12 TCGA-QB-AA9O-06 6 76018497 76018497 G A FILIP1 Silent p.F1184F 0.38 TCGA-QB-AA9O-06 6 76551093 76551093 C T MYO6 Missense_Mutation p.R272W 0.44 deleterious(0) unknown(0) TCGA-QB-AA9O-06 6 80636001 80636001 C T ELOVL4 Nonsense_Mutation p.W66* 0.52 TCGA-QB-AA9O-06 6 84366572 84366572 C T SNAP91 Missense_Mutation p.E187K 0.27 deleterious(0) unknown(0) TCGA-QB-AA9O-06 6 90398310 90398310 T A MDN1 Missense_Mutation p.E3747D 0.24 benign(0.022) TCGA-QB-AA9O-06 6 90415834 90415834 C A MDN1 Missense_Mutation p.V2698F 0.32 benign(0.223) TCGA-QB-AA9O-06 6 94066482 94066482 C T EPHA7 Missense_Mutation p.R426Q 0.44 tolerated(0.17) possibly_damaging(0.53) TCGA-QB-AA9O-06 6 94120270 94120270 C T EPHA7 Missense_Mutation p.G261R 0.37 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 6 97246947 97246947 G T GPR63 Missense_Mutation p.Q221K 0.18 tolerated(0.39) benign(0.063) TCGA-QB-AA9O-06 7 100319303 100319303 G A EPO Missense_Mutation p.A46T 0.34 deleterious(0) probably_damaging(0.985) TCGA-QB-AA9O-06 7 100488865 100488865 C T ACHE Missense_Mutation p.E550K 0.52 tolerated(0.97) benign(0.009) TCGA-QB-AA9O-06 7 100679768 100679768 C T MUC17 Missense_Mutation p.P1691S 0.33 probably_damaging(0.99) TCGA-QB-AA9O-06 7 100684872 100684872 C T MUC17 Missense_Mutation p.S3392L 0.41 benign(0.127) TCGA-QB-AA9O-06 7 100686966 100686966 C T MUC17 Missense_Mutation p.T4090I 0.42 unknown(0) TCGA-QB-AA9O-06 7 100732020 100732020 C T TRIM56 Missense_Mutation p.P476L 0.30 deleterious(0.02) probably_damaging(0.983) TCGA-QB-AA9O-06 7 103243814 103243814 T A RELN Missense_Mutation p.E1090D 0.32 tolerated(0.18) benign(0.314) TCGA-QB-AA9O-06 7 107706265 107706265 G A LAMB4 Silent p.S926S 0.46 TCGA-QB-AA9O-06 7 107746996 107746996 G A LAMB4 Missense_Mutation p.P205S 0.37 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 7 113518849 113518849 G A PPP1R3A Silent p.I766I 0.12 TCGA-QB-AA9O-06 7 114298229 114298229 C T FOXP2 Nonsense_Mutation p.Q484* 0.37 TCGA-QB-AA9O-06 7 117067562 117067562 C T ASZ1 5'UTR 0.46 TCGA-QB-AA9O-06 7 117199692 117199692 G A CFTR Missense_Mutation p.A523T 0.38 deleterious(0) benign(0.385) TCGA-QB-AA9O-06 7 120971931 120971931 C T WNT16 Silent p.F182F 0.39 TCGA-QB-AA9O-06 7 121756782 121756782 G A AASS Missense_Mutation p.R267C 0.44 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 7 127732073 127732073 G A SND1 Missense_Mutation p.R899Q 0.45 deleterious(0.03) benign(0.107) TCGA-QB-AA9O-06 7 128038654 128038654 G A IMPDH1 Silent p.I296I 0.29 TCGA-QB-AA9O-06 7 128488974 128488974 C T FLNC Missense_Mutation p.P1622L 0.46 deleterious(0.01) probably_damaging(1) TCGA-QB-AA9O-06 7 128493825 128493825 C T FLNC Missense_Mutation p.R2140W 0.38 deleterious(0) probably_damaging(0.993) TCGA-QB-AA9O-06 7 131848994 131848994 C T PLXNA4 Missense_Mutation p.M1469I 0.17 tolerated(0.11) probably_damaging(0.989) TCGA-QB-AA9O-06 7 131866208 131866208 G A PLXNA4 Missense_Mutation p.P1142S 0.29 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 7 131883285 131883285 C T PLXNA4 Silent p.V899V 0.46 TCGA-QB-AA9O-06 7 133933729 133933729 G A LRGUK Missense_Mutation p.S700N 0.13 tolerated(0.26) benign(0.002) TCGA-QB-AA9O-06 7 136587947 136587947 C T CHRM2 Intron 0.49 TCGA-QB-AA9O-06 7 136700153 136700153 T C CHRM2 Missense_Mutation p.F181L 0.13 tolerated(1) benign(0.019) TCGA-QB-AA9O-06 7 138595947 138595947 G A KIAA1549 Silent p.I1030I 0.16 TCGA-QB-AA9O-06 7 138602794 138602794 G A KIAA1549 Silent p.G526G 0.50 TCGA-QB-AA9O-06 7 139724636 139724636 G A PARP12 Silent p.S610S 0.30 TCGA-QB-AA9O-06 7 140154402 140154402 C T MKRN1 Missense_Mutation p.G455D 0.12 deleterious(0.04) probably_damaging(1) TCGA-QB-AA9O-06 7 141752608 141752608 T A MGAM Missense_Mutation p.F995I 0.17 tolerated(0.37) benign(0.013) TCGA-QB-AA9O-06 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-QB-AA9O-06 7 141803148 141803148 G A MGAM Nonsense_Mutation p.W1802* 0.29 TCGA-QB-AA9O-06 7 141803149 141803149 G A MGAM Nonsense_Mutation p.W1802* 0.29 TCGA-QB-AA9O-06 7 142120098 142120098 G A TRBV7-7 Silent p.V23V 0.33 TCGA-QB-AA9O-06 7 142168802 142168802 C T TRBV5-4 Missense_Mutation p.G15R 0.16 tolerated(0.07) probably_damaging(0.964) TCGA-QB-AA9O-06 7 142198044 142198044 C T TRBV11-2 RNA 0.36 TCGA-QB-AA9O-06 7 142206912 142206912 C T TRBV10-2 Missense_Mutation p.G17R 0.36 deleterious(0.01) benign(0.21) TCGA-QB-AA9O-06 7 142251103 142251103 G A TRBV6-4 Missense_Mutation p.S12F 0.40 tolerated(0.09) benign(0.002) TCGA-QB-AA9O-06 7 142251111 142251111 C T TRBV6-4 Silent p.V9V 0.37 TCGA-QB-AA9O-06 7 142510375 142510375 C A TRBV30 Silent p.V77V 0.38 TCGA-QB-AA9O-06 7 142564807 142564807 C T EPHB6 Silent p.F577F 0.50 TCGA-QB-AA9O-06 7 142568025 142568025 G A EPHB6 Missense_Mutation p.G889E 0.47 deleterious(0.01) possibly_damaging(0.563) TCGA-QB-AA9O-06 7 142640920 142640920 G A KEL Silent p.S514S 0.31 TCGA-QB-AA9O-06 7 142641770 142641770 G A KEL Missense_Mutation p.P458L 0.32 tolerated(0.11) benign(0.405) TCGA-QB-AA9O-06 7 143028384 143028384 G A CLCN1 Missense_Mutation p.E347K 0.25 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 7 143632508 143632508 C T OR2F2 Silent p.F61F 0.45 TCGA-QB-AA9O-06 7 143657289 143657289 A G OR2F1 Missense_Mutation p.S76G 0.41 deleterious(0.01) possibly_damaging(0.78) TCGA-QB-AA9O-06 7 143657656 143657656 C T OR2F1 Missense_Mutation p.T198I 0.48 tolerated(0.17) benign(0.001) TCGA-QB-AA9O-06 7 143806771 143806771 C T OR2A2 Silent p.V32V 0.34 TCGA-QB-AA9O-06 7 143826480 143826480 C T OR2A14 Missense_Mutation p.S92F 0.19 deleterious(0.03) benign(0.213) TCGA-QB-AA9O-06 7 144060273 144060273 G A ARHGEF5 Missense_Mutation p.E171K 0.31 tolerated(0.07) benign(0.319) TCGA-QB-AA9O-06 7 144060493 144060493 G A ARHGEF5 Missense_Mutation p.G244E 0.22 tolerated(0.11) benign(0.028) TCGA-QB-AA9O-06 7 144060822 144060822 G A ARHGEF5 Missense_Mutation p.E354K 0.41 tolerated(0.83) benign(0.002) TCGA-QB-AA9O-06 7 144097326 144097326 C T NOBOX Silent p.T308T 0.37 TCGA-QB-AA9O-06 7 146829589 146829589 G A CNTNAP2 Missense_Mutation p.D446N 0.45 tolerated(0.22) possibly_damaging(0.908) TCGA-QB-AA9O-06 7 147914403 147914403 G A CNTNAP2 Missense_Mutation p.G1012R 0.40 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 7 149557617 149557617 C T ZNF862 Silent p.I456I 0.46 TCGA-QB-AA9O-06 7 150174700 150174700 G A GIMAP8 Silent p.Q610Q 0.50 TCGA-QB-AA9O-06 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.10 tolerated(0.95) benign(0) TCGA-QB-AA9O-06 7 150269960 150269960 G A GIMAP4 Missense_Mutation p.D268N 0.28 tolerated(0.16) benign(0.221) TCGA-QB-AA9O-06 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.29 tolerated(0.26) benign(0.085) TCGA-QB-AA9O-06 7 150418067 150418067 G A GIMAP1 3'UTR 0.54 TCGA-QB-AA9O-06 7 150439891 150439891 G A GIMAP5 Missense_Mutation p.D222N 0.31 tolerated(0.11) benign(0.05) TCGA-QB-AA9O-06 7 150488585 150488585 G A TMEM176B 3'UTR 0.34 TCGA-QB-AA9O-06 7 150489234 150489234 G A TMEM176B Silent p.F210F 0.31 TCGA-QB-AA9O-06 7 150741107 150741107 C T ABCB8 Silent p.I605I 0.34 TCGA-QB-AA9O-06 7 150819863 150819863 C T AGAP3 Intron 0.34 TCGA-QB-AA9O-06 7 151835964 151835964 T C KMT2C Missense_Mutation p.N4854D 0.30 probably_damaging(0.999) TCGA-QB-AA9O-06 7 152346016 152346016 T A XRCC2 Missense_Mutation p.N185I 0.28 deleterious(0.04) benign(0.155) TCGA-QB-AA9O-06 7 155093987 155093987 G A INSIG1 Silent p.Q188Q 0.41 TCGA-QB-AA9O-06 7 155094107 155094107 C T INSIG1 Silent p.L228L 0.40 TCGA-QB-AA9O-06 7 156761802 156761802 G A NOM1 Missense_Mutation p.D774N 0.14 deleterious(0.02) benign(0.225) TCGA-QB-AA9O-06 7 16832560 16832560 G A AGR2 Missense_Mutation p.A167V 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 7 16834579 16834579 T C AGR2 Silent p.E153E 0.17 TCGA-QB-AA9O-06 7 18806753 18806753 C T HDAC9 Missense_Mutation p.S730F 0.40 deleterious(0) possibly_damaging(0.592) TCGA-QB-AA9O-06 7 20199464 20199464 C T MACC1 Missense_Mutation p.D174N 0.18 deleterious(0.04) possibly_damaging(0.867) TCGA-QB-AA9O-06 7 20698162 20698162 C T ABCB5 Nonsense_Mutation p.Q524* 0.50 TCGA-QB-AA9O-06 7 20762838 20762838 G A ABCB5 Missense_Mutation p.G874E 0.22 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 7 20795226 20795226 G A ABCB5 Silent p.V1251V 0.57 TCGA-QB-AA9O-06 7 23239081 23239081 C T NUPL2 Missense_Mutation p.S205F 0.25 deleterious(0.02) benign(0.077) TCGA-QB-AA9O-06 7 24329123 24329123 G A NPY Missense_Mutation p.G65E 0.19 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 7 24874229 24874229 G A OSBPL3 Missense_Mutation p.S541F 0.08 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 7 27134177 27134177 G A HOXA1 Missense_Mutation p.P297L 0.22 tolerated(0.22) probably_damaging(0.992) TCGA-QB-AA9O-06 7 27147571 27147571 C T HOXA3 Missense_Mutation p.G432E 0.58 deleterious(0.03) probably_damaging(0.993) TCGA-QB-AA9O-06 7 30701827 30701827 G A CRHR2 Missense_Mutation p.P262S 0.57 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 7 31127287 31127287 G A ADCYAP1R1 Missense_Mutation p.G311S 0.14 tolerated(0.2) possibly_damaging(0.897) TCGA-QB-AA9O-06 7 31746907 31746907 C T PPP1R17 3'UTR 0.16 TCGA-QB-AA9O-06 7 34724227 34724227 C T NPSR1 Missense_Mutation p.L71F 0.46 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 7 35244098 35244098 C T TBX20 Silent p.Q329Q 0.21 TCGA-QB-AA9O-06 7 37052960 37052960 G A ELMO1 Nonsense_Mutation p.Q461* 0.59 TCGA-QB-AA9O-06 7 37923971 37923971 C T NME8 Missense_Mutation p.S354L 0.21 deleterious(0) probably_damaging(0.969) TCGA-QB-AA9O-06 7 37934097 37934097 G A NME8 Missense_Mutation p.G477R 0.45 deleterious(0.04) possibly_damaging(0.651) TCGA-QB-AA9O-06 7 38398154 38398154 C T TRGV3 Missense_Mutation p.E105K 0.20 tolerated(0.16) benign(0.136) TCGA-QB-AA9O-06 7 38424418 38424418 C T AMPH 3'UTR 0.14 TCGA-QB-AA9O-06 7 4091342 4091342 C T SDK1 Missense_Mutation p.H931Y 0.12 deleterious(0.01) possibly_damaging(0.625) TCGA-QB-AA9O-06 7 41739950 41739950 C T INHBA Missense_Mutation p.G8E 0.51 tolerated(0.09) benign(0.026) TCGA-QB-AA9O-06 7 43547640 43547640 T C HECW1 Missense_Mutation p.L1259S 0.16 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 7 44733588 44733588 C T OGDH Silent p.D500D 0.20 TCGA-QB-AA9O-06 7 44798974 44798974 C T ZMIZ2 Missense_Mutation p.P303L 0.62 deleterious(0) possibly_damaging(0.585) TCGA-QB-AA9O-06 7 47453581 47453581 G A TNS3 Silent p.L201L 0.35 TCGA-QB-AA9O-06 7 53103940 53103940 C T POM121L12 Silent p.F192F 0.20 TCGA-QB-AA9O-06 7 55224321 55224321 G A EGFR Missense_Mutation p.D368N 0.22 tolerated(1) possibly_damaging(0.895) TCGA-QB-AA9O-06 7 5567477 5567477 A G ACTB Missense_Mutation p.S344P 0.52 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-QB-AA9O-06 7 62752259 62752259 G A ZNF733P RNA 0.15 TCGA-QB-AA9O-06 7 62752830 62752830 G A ZNF733P RNA 0.13 TCGA-QB-AA9O-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.51 deleterious(0) possibly_damaging(0.869) TCGA-QB-AA9O-06 7 6634203 6634203 C T C7orf26 Silent p.S184S 0.23 TCGA-QB-AA9O-06 7 71488739 71488739 T A CALN1 Missense_Mutation p.D135V 0.23 deleterious(0) benign(0.259) TCGA-QB-AA9O-06 7 72657511 72657511 C T GTF2IRD2P1 RNA 0.49 TCGA-QB-AA9O-06 7 72849297 72849297 C G FZD9 Silent p.L320L 0.12 TCGA-QB-AA9O-06 7 76140141 76140141 C T UPK3B Missense_Mutation p.P58S 0.28 deleterious_low_confidence(0.01) benign(0) TCGA-QB-AA9O-06 7 77408382 77408383 - A RSBN1L Frame_Shift_Ins p.E815Gfs*12 0.32 TCGA-QB-AA9O-06 7 82538276 82538276 G A PCLO Missense_Mutation p.R4452C 0.41 unknown(0) TCGA-QB-AA9O-06 7 82583118 82583118 G A PCLO Missense_Mutation p.S2384F 0.60 unknown(0) TCGA-QB-AA9O-06 7 82585115 82585115 C T PCLO Silent p.S1718S 0.25 TCGA-QB-AA9O-06 7 82586180 82586180 C T PCLO Silent p.T1363T 0.57 TCGA-QB-AA9O-06 7 82595128 82595128 T A PCLO Missense_Mutation p.T1326S 0.50 unknown(0) TCGA-QB-AA9O-06 7 82784986 82784986 G A PCLO Missense_Mutation p.S324L 0.29 unknown(0) TCGA-QB-AA9O-06 7 86394323 86394323 A G GRM3 Intron 0.60 TCGA-QB-AA9O-06 7 86468921 86468921 G A GRM3 Silent p.L697L 0.27 TCGA-QB-AA9O-06 7 86539319 86539319 T C KIAA1324L Splice_Site p.X724_splice 0.27 TCGA-QB-AA9O-06 7 89900929 89900929 G A C7orf63 Missense_Mutation p.E208K 0.47 deleterious(0) benign(0.281) TCGA-QB-AA9O-06 7 97614201 97614201 C T OCM2 3'UTR 0.15 TCGA-QB-AA9O-06 7 98453779 98453779 C T TMEM130 Silent p.V193V 0.48 TCGA-QB-AA9O-06 7 98522829 98522829 C T TRRAP Missense_Mutation p.A973V 0.27 probably_damaging(0.954) TCGA-QB-AA9O-06 7 99367761 99367761 C T CYP3A4 Missense_Mutation p.S139N 0.15 deleterious(0.01) possibly_damaging(0.557) TCGA-QB-AA9O-06 8 101008737 101008737 C T RGS22 Missense_Mutation p.E991K 0.21 deleterious(0) possibly_damaging(0.632) TCGA-QB-AA9O-06 8 101152991 101152991 G A FBXO43 Silent p.I497I 0.14 TCGA-QB-AA9O-06 8 101620767 101620767 G A SNX31 Silent p.S212S 0.31 TCGA-QB-AA9O-06 8 101721690 101721690 T A PABPC1 Silent p.P414P 0.10 TCGA-QB-AA9O-06 8 104898050 104898050 G A RIMS2 Missense_Mutation p.R408Q 0.65 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-QB-AA9O-06 8 105263904 105263904 A C RIMS2 Missense_Mutation p.E1302D 0.14 tolerated_low_confidence(0.43) benign(0.051) TCGA-QB-AA9O-06 8 105360880 105360880 G A DCSTAMP Missense_Mutation p.G34R 0.73 deleterious(0.01) possibly_damaging(0.828) TCGA-QB-AA9O-06 8 105361164 105361164 C T DCSTAMP Silent p.N128N 0.14 TCGA-QB-AA9O-06 8 105361507 105361507 G A DCSTAMP Missense_Mutation p.E243K 0.12 tolerated(0.7) benign(0.098) TCGA-QB-AA9O-06 8 105405031 105405031 C T DPYS Missense_Mutation p.R475Q 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-QB-AA9O-06 8 105405064 105405064 G A DPYS Missense_Mutation p.P464L 0.10 deleterious(0) benign(0.185) TCGA-QB-AA9O-06 8 108297069 108297069 C T ANGPT1 Missense_Mutation p.G349E 0.09 deleterious(0) probably_damaging(0.974) TCGA-QB-AA9O-06 8 110451162 110451162 G A PKHD1L1 Missense_Mutation p.G1266E 0.15 deleterious(0.02) possibly_damaging(0.907) TCGA-QB-AA9O-06 8 110476816 110476816 G A PKHD1L1 Nonsense_Mutation p.W2585* 0.49 TCGA-QB-AA9O-06 8 113236873 113236873 C T CSMD3 3'UTR 0.33 TCGA-QB-AA9O-06 8 113237051 113237051 C T CSMD3 Silent p.G3691G 0.62 TCGA-QB-AA9O-06 8 113314135 113314135 G A CSMD3 Missense_Mutation p.S2776L 0.66 tolerated(0.29) benign(0.099) TCGA-QB-AA9O-06 8 113564835 113564835 C T CSMD3 Missense_Mutation p.G1450E 0.21 deleterious(0) possibly_damaging(0.883) TCGA-QB-AA9O-06 8 11640782 11640782 C T NEIL2 Missense_Mutation p.P188S 0.30 deleterious(0.02) benign(0.323) TCGA-QB-AA9O-06 8 118184899 118184899 C T SLC30A8 Silent p.F363F 0.68 TCGA-QB-AA9O-06 8 119936881 119936881 T C TNFRSF11B Missense_Mutation p.E313G 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-QB-AA9O-06 8 120744037 120744037 G A TAF2 3'UTR 0.53 TCGA-QB-AA9O-06 8 120756564 120756564 G A TAF2 Missense_Mutation p.H1060Y 0.62 tolerated_low_confidence(0.09) possibly_damaging(0.538) TCGA-QB-AA9O-06 8 124408514 124408514 G A ATAD2 Silent p.F28F 0.18 TCGA-QB-AA9O-06 8 124818329 124818329 G A FAM91A1 Missense_Mutation p.R631H 0.13 tolerated(0.2) benign(0.009) TCGA-QB-AA9O-06 8 124989791 124989791 C T FER1L6 Silent p.A335A 0.57 TCGA-QB-AA9O-06 8 124989792 124989792 C T FER1L6 Silent p.L336L 0.55 TCGA-QB-AA9O-06 8 125025695 125025695 G A FER1L6 Missense_Mutation p.E616K 0.08 tolerated(0.19) benign(0.201) TCGA-QB-AA9O-06 8 125080030 125080030 G A FER1L6 Missense_Mutation p.G1234E 0.12 tolerated(0.7) benign(0) TCGA-QB-AA9O-06 8 125083825 125083825 C T FER1L6 Missense_Mutation p.P1349S 0.75 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 8 125131969 125131969 C T FER1L6 Missense_Mutation p.L1838F 0.67 deleterious(0.04) probably_damaging(0.999) TCGA-QB-AA9O-06 8 125132006 125132006 G A FER1L6 Missense_Mutation p.S1850N 0.12 tolerated(0.16) probably_damaging(0.999) TCGA-QB-AA9O-06 8 131130436 131130436 G A ASAP1 Silent p.L617L 0.46 TCGA-QB-AA9O-06 8 133146557 133146557 G A KCNQ3 Silent p.F593F 0.13 TCGA-QB-AA9O-06 8 133192460 133192460 C T KCNQ3 Missense_Mutation p.D241N 0.39 deleterious(0) probably_damaging(0.986) TCGA-QB-AA9O-06 8 133984036 133984036 C T TG Intron 0.29 TCGA-QB-AA9O-06 8 135614843 135614843 G A ZFAT Silent p.I373I 0.10 TCGA-QB-AA9O-06 8 139155319 139155319 C T FAM135B Missense_Mutation p.D1192N 0.54 deleterious(0) probably_damaging(0.988) TCGA-QB-AA9O-06 8 139165354 139165354 G A FAM135B Missense_Mutation p.S455F 0.68 deleterious(0.02) possibly_damaging(0.45) TCGA-QB-AA9O-06 8 139190844 139190844 G A FAM135B Silent p.F321F 0.58 TCGA-QB-AA9O-06 8 139380163 139380163 G A FAM135B Missense_Mutation p.L22F 0.49 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 8 139696688 139696688 G A COL22A1 Missense_Mutation p.P998S 0.59 unknown(0) TCGA-QB-AA9O-06 8 139793195 139793195 C T COL22A1 Missense_Mutation p.G542E 0.25 unknown(0) TCGA-QB-AA9O-06 8 141461316 141461316 G A TRAPPC9 Missense_Mutation p.L151F 0.62 tolerated(0.08) probably_damaging(0.988) TCGA-QB-AA9O-06 8 142505449 142505449 C T MROH5 Missense_Mutation p.D98N 0.08 tolerated(0.1) benign(0.187) TCGA-QB-AA9O-06 8 143857352 143857352 G A LYNX1 Silent p.I8I 0.66 TCGA-QB-AA9O-06 8 144464826 144464826 C T RHPN1 3'UTR 0.75 TCGA-QB-AA9O-06 8 144811403 144811403 G A FAM83H Silent p.L180L 0.59 TCGA-QB-AA9O-06 8 144811404 144811404 G A FAM83H Silent p.I179I 0.59 TCGA-QB-AA9O-06 8 144940486 144940486 G A EPPK1 Silent p.D2312D 0.03 TCGA-QB-AA9O-06 8 144942717 144942717 C T EPPK1 Missense_Mutation p.G1569R 0.21 probably_damaging(1) TCGA-QB-AA9O-06 8 145161551 145161551 C T MAF1 Silent p.I198I 0.25 TCGA-QB-AA9O-06 8 145656486 145656486 C A TONSL Missense_Mutation p.D1262Y 0.64 deleterious(0) probably_damaging(0.969) TCGA-QB-AA9O-06 8 24256520 24256520 G A ADAMDEC1 Missense_Mutation p.G299E 0.21 tolerated(0.88) benign(0.026) TCGA-QB-AA9O-06 8 24321395 24321395 G A ADAM7 Silent p.R78R 0.29 TCGA-QB-AA9O-06 8 24321470 24321470 C T ADAM7 Silent p.I103I 0.21 TCGA-QB-AA9O-06 8 24344778 24344778 G A ADAM7 Missense_Mutation p.E347K 0.28 tolerated(0.32) benign(0.265) TCGA-QB-AA9O-06 8 24348325 24348325 C T ADAM7 Missense_Mutation p.P427L 0.30 tolerated(0.74) benign(0.109) TCGA-QB-AA9O-06 8 24773184 24773184 G A NEFM Missense_Mutation p.E383K 0.48 deleterious(0) unknown(0) TCGA-QB-AA9O-06 8 24775889 24775889 G A NEFM Missense_Mutation p.E841K 0.19 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-QB-AA9O-06 8 25718726 25718726 C T EBF2 Missense_Mutation p.R394Q 0.29 deleterious(0.01) possibly_damaging(0.76) TCGA-QB-AA9O-06 8 26721998 26721998 G A ADRA1A Silent p.F163F 0.28 TCGA-QB-AA9O-06 8 27398069 27398069 A T EPHX2 Splice_Site p.X426_splice 0.23 TCGA-QB-AA9O-06 8 30210496 30210496 G T TUBBP1 RNA 0.33 TCGA-QB-AA9O-06 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.15 probably_damaging(0.999) TCGA-QB-AA9O-06 8 32620834 32620834 C T NRG1 Intron 0.20 TCGA-QB-AA9O-06 8 35406844 35406844 C T UNC5D Silent p.I46I 0.19 TCGA-QB-AA9O-06 8 36768547 36768547 A T KCNU1 Missense_Mutation p.T811S 0.20 tolerated(0.8) benign(0.021) TCGA-QB-AA9O-06 8 37690539 37690539 C T GPR124 Missense_Mutation p.T370I 0.17 deleterious(0) probably_damaging(0.971) TCGA-QB-AA9O-06 8 38109680 38109680 A G DDHD2 Missense_Mutation p.K498E 0.48 tolerated(1) benign(0.02) TCGA-QB-AA9O-06 8 39103614 39103614 C T ADAM32 Missense_Mutation p.R611C 0.32 tolerated(0.16) possibly_damaging(0.735) TCGA-QB-AA9O-06 8 39564406 39564406 G A ADAM18 Missense_Mutation p.G667E 0.12 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 8 39785625 39785625 G A IDO1 Missense_Mutation p.G378E 0.33 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 8 39792728 39792728 C T IDO2 Missense_Mutation p.H5Y 0.14 tolerated_low_confidence(0.33) benign(0.001) TCGA-QB-AA9O-06 8 39847274 39847274 C T IDO2 Missense_Mutation p.P208L 0.60 tolerated(0.35) benign(0.007) TCGA-QB-AA9O-06 8 39847275 39847275 C T IDO2 Silent p.P208P 0.60 TCGA-QB-AA9O-06 8 40438755 40438755 G A ZMAT4 Silent p.T201T 0.52 TCGA-QB-AA9O-06 8 40625165 40625165 C T ZMAT4 Missense_Mutation p.E63K 0.54 tolerated(0.21) benign(0.37) TCGA-QB-AA9O-06 8 41561653 41561653 C T ANK1 Missense_Mutation p.G767E 0.52 deleterious(0) probably_damaging(0.974) TCGA-QB-AA9O-06 8 41791689 41791689 G A KAT6A Missense_Mutation p.S1350F 0.19 unknown(0) TCGA-QB-AA9O-06 8 42585803 42585803 C T CHRNB3 Missense_Mutation p.P106S 0.20 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 8 48776009 48776009 G A PRKDC Missense_Mutation p.H1900Y 0.53 benign(0.008) TCGA-QB-AA9O-06 8 53045673 53045673 C T ST18 Silent p.R796R 0.54 TCGA-QB-AA9O-06 8 53454960 53454960 T G FAM150A Missense_Mutation p.H79P 0.21 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 8 55540477 55540477 A T RP1 Missense_Mutation p.L1345F 0.15 tolerated(0.05) benign(0.059) TCGA-QB-AA9O-06 8 62289277 62289277 C T CLVS1 Missense_Mutation p.S190F 0.58 deleterious(0) probably_damaging(0.971) TCGA-QB-AA9O-06 8 63492222 63492222 G A NKAIN3 Missense_Mutation p.R60Q 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-QB-AA9O-06 8 65528819 65528819 G A CYP7B1 Silent p.I93I 0.39 TCGA-QB-AA9O-06 8 65537058 65537058 G A CYP7B1 Missense_Mutation p.P54L 0.61 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 8 68170430 68170430 G A ARFGEF1 Silent p.F777F 0.15 TCGA-QB-AA9O-06 8 69351813 69351813 G A C8orf34 Missense_Mutation p.G136E 0.67 tolerated(0.06) possibly_damaging(0.519) TCGA-QB-AA9O-06 8 69358625 69358625 G A C8orf34 Silent p.K179K 0.76 TCGA-QB-AA9O-06 8 70488360 70488360 G A SULF1 Missense_Mutation p.E110K 0.15 deleterious(0.04) benign(0.269) TCGA-QB-AA9O-06 8 72111646 72111646 G A EYA1 Missense_Mutation p.P570S 0.12 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 8 72129258 72129258 C T EYA1 Missense_Mutation p.E381K 0.29 deleterious(0.04) benign(0.069) TCGA-QB-AA9O-06 8 73480453 73480453 C T KCNB2 Nonsense_Mutation p.R162* 0.05 TCGA-QB-AA9O-06 8 75737586 75737586 C T PI15 Silent p.T34T 0.21 TCGA-QB-AA9O-06 8 8234766 8234766 G T SGK223 Missense_Mutation p.P385T 0.21 benign(0) TCGA-QB-AA9O-06 8 8234767 8234767 G A SGK223 Silent p.T384T 0.21 TCGA-QB-AA9O-06 8 82370652 82370652 T A FABP9 Missense_Mutation p.N122I 0.28 deleterious(0.03) benign(0.055) TCGA-QB-AA9O-06 8 86157956 86157956 C T CA13 5'UTR 0.17 TCGA-QB-AA9O-06 8 86157957 86157957 C T CA13 5'UTR 0.17 TCGA-QB-AA9O-06 8 87229707 87229707 G A SLC7A13 Missense_Mutation p.P391S 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-QB-AA9O-06 8 93003912 93003912 G A RUNX1T1 Nonsense_Mutation p.R327* 0.11 TCGA-QB-AA9O-06 9 104170616 104170616 C T ZNF189 Missense_Mutation p.S189L 0.69 deleterious(0.01) possibly_damaging(0.879) TCGA-QB-AA9O-06 9 105767430 105767430 G A CYLC2 Missense_Mutation p.D173N 0.59 tolerated(0.07) unknown(0) TCGA-QB-AA9O-06 9 111617479 111617479 G A ACTL7B Silent p.F244F 0.32 TCGA-QB-AA9O-06 9 112211162 112211162 C T PTPN3 Intron 0.69 TCGA-QB-AA9O-06 9 113066763 113066763 C T TXNDC8 Missense_Mutation p.G102E 0.69 tolerated(0.15) benign(0.145) TCGA-QB-AA9O-06 9 113431136 113431136 C T MUSK 5'UTR 0.71 TCGA-QB-AA9O-06 9 117118362 117118362 A T AKNA Silent p.A967A 0.42 TCGA-QB-AA9O-06 9 117835886 117835886 G A TNC Silent p.S1070S 0.33 TCGA-QB-AA9O-06 9 118997729 118997729 G A PAPPA Missense_Mutation p.E849K 0.89 tolerated(1) benign(0.292) TCGA-QB-AA9O-06 9 119093543 119093543 A G PAPPA Missense_Mutation p.I1056M 0.56 tolerated(0.22) benign(0.308) TCGA-QB-AA9O-06 9 119093544 119093544 G A PAPPA Missense_Mutation p.D1057N 0.56 deleterious(0.04) possibly_damaging(0.539) TCGA-QB-AA9O-06 9 119158934 119158934 G A PAPPA 3'UTR 0.73 TCGA-QB-AA9O-06 9 126794708 126794708 C T LHX2 Nonsense_Mutation p.Q315* 0.31 TCGA-QB-AA9O-06 9 130479112 130479112 T G PTRH1 5'UTR 0.21 TCGA-QB-AA9O-06 9 130914530 130914530 C T LCN2 Missense_Mutation p.P182S 0.63 tolerated(0.25) benign(0.008) TCGA-QB-AA9O-06 9 131745569 131745569 C T NUP188 Intron 0.73 TCGA-QB-AA9O-06 9 132637654 132637654 C T USP20 Missense_Mutation p.P705L 0.83 deleterious(0) possibly_damaging(0.493) TCGA-QB-AA9O-06 9 134322526 134322526 C T PRRC2B Missense_Mutation p.P304S 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-QB-AA9O-06 9 134404960 134404960 T G UCK1 Missense_Mutation p.N99H 0.52 tolerated(0.32) benign(0.095) TCGA-QB-AA9O-06 9 135140201 135140201 G A SETX Nonsense_Mutation p.Q2487* 0.71 TCGA-QB-AA9O-06 9 137600393 137600393 C T COL5A1 Intron 0.73 TCGA-QB-AA9O-06 9 137696854 137696854 G A COL5A1 Missense_Mutation p.D1050N 0.62 unknown(0) TCGA-QB-AA9O-06 9 138670610 138670610 G A KCNT1 Missense_Mutation p.A891T 0.73 deleterious(0) probably_damaging(0.973) TCGA-QB-AA9O-06 9 139925792 139925792 G A FUT7 Silent p.L133L 0.65 TCGA-QB-AA9O-06 9 140100306 140100306 G A NDOR1 Missense_Mutation p.R26H 0.71 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 9 140109032 140109032 G T NDOR1 Missense_Mutation p.G245C 0.76 deleterious(0) probably_damaging(0.999) TCGA-QB-AA9O-06 9 14842487 14842487 G T FREM1 Missense_Mutation p.P522Q 0.72 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 9 17795742 17795742 G A SH3GL2 3'UTR 0.50 TCGA-QB-AA9O-06 9 2719071 2719071 C - KCNV2 Frame_Shift_Del p.H446Tfs*8 0.26 TCGA-QB-AA9O-06 9 33301335 33301335 C T NFX1 Missense_Mutation p.P370S 0.64 tolerated(0.08) benign(0.097) TCGA-QB-AA9O-06 9 33301336 33301336 C T NFX1 Missense_Mutation p.P370L 0.65 deleterious(0.01) possibly_damaging(0.468) TCGA-QB-AA9O-06 9 4118006 4118006 C T GLIS3 Missense_Mutation p.G491E 0.28 tolerated(0.25) probably_damaging(1) TCGA-QB-AA9O-06 9 79322795 79322795 T C PRUNE2 Silent p.K1465K 0.56 TCGA-QB-AA9O-06 9 86616553 86616553 G A RMI1 Missense_Mutation p.V218I 0.67 tolerated(0.5) benign(0.006) TCGA-QB-AA9O-06 9 90503409 90503409 G A SPATA31E1 Missense_Mutation p.G1336E 0.58 deleterious(0) benign(0.279) TCGA-QB-AA9O-06 9 91972354 91972354 T G SECISBP2 Missense_Mutation p.I714M 0.74 deleterious(0) probably_damaging(0.997) TCGA-QB-AA9O-06 9 94843197 94843197 G A SPTLC1 Silent p.F103F 0.71 TCGA-QB-AA9O-06 9 95108066 95108066 C T CENPP Missense_Mutation p.S155F 0.90 deleterious(0) possibly_damaging(0.788) TCGA-QB-AA9O-06 9 95481189 95481189 G C BICD2 Missense_Mutation p.R580G 0.64 deleterious(0.03) benign(0.143) TCGA-QB-AA9O-06 9 990476 990476 G A DMRT3 Missense_Mutation p.R297Q 0.56 deleterious(0.04) benign(0.105) TCGA-QB-AA9O-06 9 99581700 99581700 A G ZNF782 Missense_Mutation p.V202A 0.77 tolerated(0.54) benign(0.15) TCGA-QB-AA9O-06 X 102334995 102334995 C T NXF3 Missense_Mutation p.G333E 0.68 tolerated(1) benign(0.056) TCGA-QB-AA9O-06 X 105277599 105277599 G A SERPINA7 Silent p.F380F 0.71 TCGA-QB-AA9O-06 X 105280658 105280658 C T SERPINA7 Missense_Mutation p.G131E 0.71 deleterious(0.03) probably_damaging(0.994) TCGA-QB-AA9O-06 X 107863609 107863609 C T COL4A5 Missense_Mutation p.P877L 0.52 unknown(0) TCGA-QB-AA9O-06 X 108708564 108708564 G A GUCY2F Missense_Mutation p.P280L 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-QB-AA9O-06 X 114244139 114244139 G A IL13RA2 Missense_Mutation p.P266L 0.75 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 X 114868380 114868380 C T PLS3 Missense_Mutation p.P190L 0.73 tolerated(0.33) possibly_damaging(0.486) TCGA-QB-AA9O-06 X 117043880 117043880 C T KLHL13 Silent p.K253K 0.84 TCGA-QB-AA9O-06 X 122387169 122387169 C T GRIA3 Missense_Mutation p.S95L 0.65 deleterious(0) probably_damaging(0.955) TCGA-QB-AA9O-06 X 129270669 129270669 G A AIFM1 Silent p.S371S 0.75 TCGA-QB-AA9O-06 X 129630047 129630047 A C RP1-274L7.1 Intron 0.73 TCGA-QB-AA9O-06 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.35 tolerated(0.29) benign(0.005) TCGA-QB-AA9O-06 X 132730475 132730475 G A GPC3 Silent p.F545F 0.75 TCGA-QB-AA9O-06 X 134983835 134983835 T C SAGE1 Silent p.L69L 0.75 TCGA-QB-AA9O-06 X 135498646 135498646 C T GPR112 Missense_Mutation p.P3080L 0.66 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-QB-AA9O-06 X 140996174 140996174 C T MAGEC1 Missense_Mutation p.S995F 0.55 deleterious(0) unknown(0) TCGA-QB-AA9O-06 X 141291122 141291122 C T MAGEC2 Missense_Mutation p.G218S 0.76 deleterious(0.04) probably_damaging(0.998) TCGA-QB-AA9O-06 X 141291671 141291671 C T MAGEC2 Missense_Mutation p.E35K 0.72 tolerated(0.06) possibly_damaging(0.636) TCGA-QB-AA9O-06 X 1424418 1424418 G A CSF2RA Missense_Mutation p.E409K 0.25 deleterious(0.01) benign(0.225) TCGA-QB-AA9O-06 X 142717370 142717370 G A SLITRK4 Nonsense_Mutation p.Q519* 0.81 TCGA-QB-AA9O-06 X 142967459 142967459 G A UBE2NL Missense_Mutation p.R86K 0.76 deleterious(0.04) benign(0.398) TCGA-QB-AA9O-06 X 150789456 150789456 G A PASD1 Missense_Mutation p.E88K 0.70 tolerated(0.16) benign(0.12) TCGA-QB-AA9O-06 X 150789486 150789486 C T PASD1 Missense_Mutation p.P98S 0.72 deleterious(0.01) probably_damaging(0.973) TCGA-QB-AA9O-06 X 151092947 151092947 G A MAGEA4 Missense_Mutation p.E271K 0.67 tolerated(0.05) probably_damaging(0.944) TCGA-QB-AA9O-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.74 deleterious(0) probably_damaging(0.995) TCGA-QB-AA9O-06 X 151128413 151128413 C T GABRE Missense_Mutation p.E228K 0.77 tolerated(0.95) benign(0.067) TCGA-QB-AA9O-06 X 151303114 151303114 G A MAGEA10 Missense_Mutation p.P327S 0.76 tolerated(0.37) benign(0.41) TCGA-QB-AA9O-06 X 151424396 151424396 G A GABRA3 Silent p.I135I 0.72 TCGA-QB-AA9O-06 X 151900551 151900551 C T MAGEA12 Missense_Mutation p.D84N 0.80 tolerated(0.49) benign(0.009) TCGA-QB-AA9O-06 X 152128285 152128285 C T ZNF185 Silent p.V515V 0.88 TCGA-QB-AA9O-06 X 155003657 155003657 C T SPRY3 Missense_Mutation p.P42S 0.47 tolerated(0.06) benign(0.009) TCGA-QB-AA9O-06 X 155003658 155003658 C T SPRY3 Missense_Mutation p.P42L 0.48 deleterious(0.02) benign(0.008) TCGA-QB-AA9O-06 X 18915447 18915447 G A PHKA2 Missense_Mutation p.S1039F 0.79 tolerated(0.59) benign(0.001) TCGA-QB-AA9O-06 X 23411607 23411607 A T PTCHD1 Nonsense_Mutation p.R658* 0.44 TCGA-QB-AA9O-06 X 23929949 23929949 C T CXorf58 Silent p.L64L 0.41 TCGA-QB-AA9O-06 X 23933872 23933872 T C CXorf58 Missense_Mutation p.L91P 0.71 deleterious(0) probably_damaging(0.998) TCGA-QB-AA9O-06 X 26213035 26213035 C T MAGEB6 Silent p.L358L 0.70 TCGA-QB-AA9O-06 X 30254634 30254634 T G MAGEB3 Missense_Mutation p.F198C 0.43 deleterious(0) probably_damaging(0.967) TCGA-QB-AA9O-06 X 3229433 3229433 G A MXRA5 Missense_Mutation p.P2271S 0.67 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 X 34150208 34150208 G A FAM47A Missense_Mutation p.P63L 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-QB-AA9O-06 X 34962525 34962525 A G FAM47B Missense_Mutation p.K526R 0.33 tolerated(0.26) probably_damaging(0.994) TCGA-QB-AA9O-06 X 37029226 37029226 G A FAM47C Missense_Mutation p.E915K 0.80 tolerated(0.3) benign(0.013) TCGA-QB-AA9O-06 X 37663292 37663292 C T CYBB Missense_Mutation p.H354Y 0.72 deleterious(0) probably_damaging(0.986) TCGA-QB-AA9O-06 X 46918087 46918087 T C JADE3 Missense_Mutation p.F694L 0.70 tolerated_low_confidence(1) benign(0) TCGA-QB-AA9O-06 X 48372673 48372673 C T PORCN Silent p.N255N 0.28 TCGA-QB-AA9O-06 X 49173668 49173668 G A GAGE10 Missense_Mutation p.E77K 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-QB-AA9O-06 X 50053020 50053020 C T CCNB3 Silent p.F617F 0.86 TCGA-QB-AA9O-06 X 52674580 52674580 C T SSX7 Silent p.G160G 0.56 TCGA-QB-AA9O-06 X 53279910 53279910 G A IQSEC2 Silent p.H616H 0.88 TCGA-QB-AA9O-06 X 54161524 54161524 C G FAM120C Missense_Mutation p.Q452H 0.68 deleterious(0.04) possibly_damaging(0.725) TCGA-QB-AA9O-06 X 54473750 54473750 G A FGD1 Silent p.A858A 0.70 TCGA-QB-AA9O-06 X 65413419 65413419 T C HEPH Silent p.F490F 0.25 TCGA-QB-AA9O-06 X 65478798 65478798 C T HEPH Missense_Mutation p.H1059Y 0.73 deleterious(0.01) probably_damaging(0.991) TCGA-QB-AA9O-06 X 70767851 70767851 T C OGT Missense_Mutation p.L209P 0.73 tolerated(0.26) probably_damaging(1) TCGA-QB-AA9O-06 X 71350433 71350433 G A RGAG4 Missense_Mutation p.P320S 0.80 tolerated(0.08) benign(0.111) TCGA-QB-AA9O-06 X 71359507 71359507 A T NHSL2 Silent p.G703G 0.73 TCGA-QB-AA9O-06 X 73961339 73961339 C T KIAA2022 Missense_Mutation p.G1018D 0.76 deleterious(0) probably_damaging(0.916) TCGA-QB-AA9O-06 X 73963402 73963402 C T KIAA2022 Silent p.Q330Q 0.83 TCGA-QB-AA9O-06 X 78010600 78010600 C T LPAR4 Silent p.I78I 0.68 TCGA-QB-AA9O-06 X 84510340 84510340 C T ZNF711 Missense_Mutation p.S52F 0.71 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-QB-AA9O-06 X 91132452 91132452 C T PCDH11X Missense_Mutation p.P405S 0.68 deleterious(0) probably_damaging(1) TCGA-QB-AA9O-06 X 9900491 9900491 C T SHROOM2 Silent p.L1056L 0.82 TCGA-RP-A690-06 11 108384832 108384832 G A EXPH5 Nonsense_Mutation p.R468* 0.41 TCGA-RP-A690-06 11 284613 284613 G A NLRP6 Silent p.Q837Q 0.17 TCGA-RP-A690-06 11 57886445 57886445 G A OR9I1 Silent p.L158L 0.41 TCGA-RP-A690-06 11 63995065 63995065 A C NUDT22 Missense_Mutation p.Q169P 0.38 tolerated(0.26) benign(0.008) TCGA-RP-A690-06 12 3103971 3103971 G A TEAD4 Nonsense_Mutation p.W13* 0.47 TCGA-RP-A690-06 12 49412460 49412461 - G PRKAG1 Intron 0.35 TCGA-RP-A690-06 14 24723923 24723923 C T TGM1 Missense_Mutation p.V679M 0.27 deleterious(0) benign(0.209) TCGA-RP-A690-06 15 77472305 77472306 TC G PEAK1 Frame_Shift_Del p.E655Qfs*6 0.30 TCGA-RP-A690-06 16 57719755 57719755 T G GPR97 Missense_Mutation p.V486G 0.42 deleterious(0) possibly_damaging(0.835) TCGA-RP-A690-06 19 19030029 19030029 C T COPE Intron 0.55 TCGA-RP-A690-06 2 198267483 198267483 C T SF3B1 Missense_Mutation p.R625H 0.47 deleterious(0) probably_damaging(1) TCGA-RP-A690-06 2 64778732 64778732 G A AFTPH Missense_Mutation p.V42I 0.04 tolerated(0.15) benign(0.044) TCGA-RP-A690-06 3 49735489 49735489 A G RNF123 Silent p.K134K 0.33 TCGA-RP-A690-06 4 113436004 113436004 G A NEUROG2 Missense_Mutation p.P210S 0.57 tolerated_low_confidence(0.14) benign(0.018) TCGA-RP-A690-06 4 68424566 68424566 G A STAP1 Silent p.R13R 0.49 TCGA-RP-A690-06 6 135287507 135287507 C T HBS1L Missense_Mutation p.R668H 0.54 deleterious(0) probably_damaging(1) TCGA-RP-A690-06 8 134146968 134146968 C T TG Missense_Mutation p.T2746M 0.28 tolerated(0.12) benign(0.118) TCGA-RP-A690-06 9 135984119 135984119 C T RALGDS Missense_Mutation p.R240H 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-RP-A690-06 9 80409488 80409488 T G GNAQ Missense_Mutation p.Q209P 0.46 deleterious(0) probably_damaging(0.999) TCGA-RP-A690-06 X 11316686 11316686 G C AMELX Missense_Mutation p.E69Q 0.49 tolerated(0.09) probably_damaging(0.932) TCGA-RP-A690-06 X 153583052 153583052 G A FLNA Nonsense_Mutation p.Q1749* 0.18 TCGA-RP-A690-06 X 73040894 73040894 T G XIST RNA 0.66 TCGA-RP-A693-06 10 103558700 103558700 C T MGEA5 Missense_Mutation p.E570K 0.38 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 10 104136511 104136511 C T GBF1 Silent p.L1413L 0.40 TCGA-RP-A693-06 10 106163551 106163551 G A CCDC147 Missense_Mutation p.E702K 0.30 deleterious(0.03) possibly_damaging(0.657) TCGA-RP-A693-06 10 123276927 123276927 C T FGFR2 Intron 0.32 TCGA-RP-A693-06 10 127520150 127520150 C T BCCIP Silent p.I191I 0.30 TCGA-RP-A693-06 10 135178172 135178172 G A ECHS1 Missense_Mutation p.T266I 0.27 deleterious(0.03) probably_damaging(0.98) TCGA-RP-A693-06 10 13534639 13534639 C T BEND7 Missense_Mutation p.G218D 0.27 tolerated_low_confidence(0.19) probably_damaging(0.985) TCGA-RP-A693-06 10 21148719 21148719 C T NEBL Missense_Mutation p.D241N 0.29 tolerated(0.09) benign(0.008) TCGA-RP-A693-06 10 25886872 25886872 G A GPR158 Missense_Mutation p.D773N 0.23 deleterious(0) possibly_damaging(0.638) TCGA-RP-A693-06 10 45487419 45487419 G A RASSF4 Missense_Mutation p.E292K 0.20 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 10 51464835 51464835 C T AGAP7 Missense_Mutation p.E541K 0.21 deleterious(0.04) probably_damaging(0.983) TCGA-RP-A693-06 10 63850979 63850979 C T ARID5B Missense_Mutation p.P586L 0.33 tolerated(0.16) benign(0.076) TCGA-RP-A693-06 10 75185909 75185909 G A MSS51 Silent p.P243P 0.45 TCGA-RP-A693-06 10 90591635 90591635 G A ANKRD22 Missense_Mutation p.S57F 0.30 deleterious(0.01) possibly_damaging(0.811) TCGA-RP-A693-06 10 91163358 91163358 C T IFIT1 Silent p.L442L 0.29 TCGA-RP-A693-06 10 91371713 91371713 C T PANK1 Missense_Mutation p.E266K 0.19 tolerated(0.06) probably_damaging(0.996) TCGA-RP-A693-06 10 91371714 91371714 C T PANK1 Silent p.E265E 0.20 TCGA-RP-A693-06 10 94597 94597 C T TUBB8 Missense_Mutation p.G79R 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-RP-A693-06 11 101834396 101834396 C T KIAA1377 Missense_Mutation p.S877L 0.26 deleterious(0.02) possibly_damaging(0.844) TCGA-RP-A693-06 11 103908697 103908697 G A DDI1 Missense_Mutation p.E383K 0.26 deleterious(0.03) benign(0.049) TCGA-RP-A693-06 11 1101936 1101936 G A MUC2 Missense_Mutation p.G2567E 0.17 unknown(0) TCGA-RP-A693-06 11 112014327 112014327 C T IL18 Missense_Mutation p.E192K 0.25 tolerated_low_confidence(1) benign(0) TCGA-RP-A693-06 11 113270762 113270762 G A ANKK1 Missense_Mutation p.V691M 0.17 tolerated(0.12) benign(0.135) TCGA-RP-A693-06 11 117314613 117314613 G A DSCAML1 Missense_Mutation p.P1344L 0.25 tolerated(0.08) probably_damaging(0.972) TCGA-RP-A693-06 11 118209805 118209805 A T CD3D 3'UTR 0.19 TCGA-RP-A693-06 11 118253383 118253383 C T UBE4A Missense_Mutation p.P704S 0.23 tolerated(0.37) benign(0.013) TCGA-RP-A693-06 11 118771389 118771389 G A BCL9L Silent p.S1021S 0.19 TCGA-RP-A693-06 11 118869782 118869782 A T CCDC84 Nonsense_Mutation p.K116* 0.32 TCGA-RP-A693-06 11 123484287 123484287 C T GRAMD1B Silent p.V573V 0.15 TCGA-RP-A693-06 11 123909622 123909622 G A OR10G7 Silent p.F29F 0.16 TCGA-RP-A693-06 11 124135139 124135139 C T OR8G5 Silent p.F139F 0.24 TCGA-RP-A693-06 11 124267052 124267052 G A OR8B3 Missense_Mutation p.L66F 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-RP-A693-06 11 124310394 124310394 C G OR8B8 Missense_Mutation p.E196D 0.18 deleterious_low_confidence(0.02) benign(0.046) TCGA-RP-A693-06 11 125763873 125763873 G A PUS3 Missense_Mutation p.P418L 0.19 deleterious(0.01) benign(0.248) TCGA-RP-A693-06 11 1263364 1263364 G A MUC5B Missense_Mutation p.E1752K 0.24 unknown(0) TCGA-RP-A693-06 11 130278660 130278660 C T ADAMTS8 Intron 0.38 TCGA-RP-A693-06 11 130284423 130284423 C T ADAMTS8 Intron 0.26 TCGA-RP-A693-06 11 14902032 14902032 T A CYP2R1 Missense_Mutation p.N217I 0.27 tolerated(0.87) probably_damaging(1) TCGA-RP-A693-06 11 1642630 1642630 C T KRTAP5-4 3'UTR 0.30 TCGA-RP-A693-06 11 18047225 18047225 C T TPH1 Missense_Mutation p.G276D 0.24 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 11 18637199 18637199 G A SPTY2D1 Missense_Mutation p.L208F 0.20 deleterious(0.01) possibly_damaging(0.587) TCGA-RP-A693-06 11 19246247 19246247 G A E2F8 Silent p.V854V 0.22 TCGA-RP-A693-06 11 19251334 19251334 G A E2F8 Silent p.S520S 0.17 TCGA-RP-A693-06 11 19258860 19258860 C T E2F8 Splice_Site p.X151_splice 0.22 TCGA-RP-A693-06 11 20066904 20066904 G A NAV2 Missense_Mutation p.S1220N 0.30 deleterious(0) probably_damaging(0.989) TCGA-RP-A693-06 11 20101726 20101726 G A NAV2 Missense_Mutation p.D1822N 0.23 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 11 26552785 26552785 G A ANO3 Nonsense_Mutation p.W257* 0.22 TCGA-RP-A693-06 11 27016272 27016272 G A FIBIN Missense_Mutation p.G67R 0.29 tolerated_low_confidence(0.34) possibly_damaging(0.648) TCGA-RP-A693-06 11 3680978 3680978 G A ART1 Missense_Mutation p.D77N 0.11 deleterious(0.05) benign(0.02) TCGA-RP-A693-06 11 40137269 40137269 C T LRRC4C Missense_Mutation p.A192T 0.08 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 11 44074226 44074226 C T ACCSL Missense_Mutation p.P263S 0.19 deleterious(0.03) possibly_damaging(0.884) TCGA-RP-A693-06 11 4409738 4409738 G A TRIM21 Missense_Mutation p.S176F 0.20 tolerated(0.4) benign(0.1) TCGA-RP-A693-06 11 4566869 4566869 C T OR52M1 Missense_Mutation p.S150F 0.25 deleterious(0) benign(0.319) TCGA-RP-A693-06 11 45891908 45891908 C T CRY2 Silent p.F479F 0.14 TCGA-RP-A693-06 11 45891909 45891909 C T CRY2 Missense_Mutation p.P480S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-RP-A693-06 11 46671807 46671807 G A ATG13 Missense_Mutation p.R133K 0.17 deleterious(0) probably_damaging(0.963) TCGA-RP-A693-06 11 46722510 46722510 G A ZNF408 5'UTR 0.17 TCGA-RP-A693-06 11 4936029 4936029 G A OR51G2 Missense_Mutation p.P289S 0.16 deleterious(0.01) probably_damaging(1) TCGA-RP-A693-06 11 55406365 55406365 G A OR4P4 Missense_Mutation p.D178N 0.19 deleterious(0.02) possibly_damaging(0.651) TCGA-RP-A693-06 11 55563808 55563808 C T OR5D14 Silent p.F259F 0.21 TCGA-RP-A693-06 11 55703584 55703584 C T OR5I1 Missense_Mutation p.G98E 0.18 deleterious(0.04) possibly_damaging(0.652) TCGA-RP-A693-06 11 55927401 55927401 G A OR8K5 Silent p.L131L 0.24 TCGA-RP-A693-06 11 56043304 56043304 G A OR5T1 Missense_Mutation p.D64N 0.14 tolerated(0.07) benign(0.12) TCGA-RP-A693-06 11 56949922 56949922 C T LRRC55 Silent p.I185I 0.22 TCGA-RP-A693-06 11 57235093 57235093 G A RTN4RL2 Missense_Mutation p.A15T 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.483) TCGA-RP-A693-06 11 5758091 5758091 C T OR56B1 Silent p.F115F 0.27 TCGA-RP-A693-06 11 57983146 57983146 G A OR1S1 Missense_Mutation p.M310I 0.25 tolerated(0.18) benign(0.008) TCGA-RP-A693-06 11 59596917 59596917 C T GIF 3'UTR 0.21 TCGA-RP-A693-06 11 60703794 60703794 G A TMEM132A Silent p.E830E 0.25 TCGA-RP-A693-06 11 61981352 61981352 C T SCGB2A1 3'UTR 0.27 TCGA-RP-A693-06 11 62373563 62373563 G A EML3 Missense_Mutation p.P543L 0.21 tolerated(0.33) benign(0.15) TCGA-RP-A693-06 11 63666288 63666288 C T MARK2 Nonsense_Mutation p.R153* 0.29 TCGA-RP-A693-06 11 64055574 64055574 C T GPR137 Missense_Mutation p.A282V 0.20 tolerated(1) benign(0.015) TCGA-RP-A693-06 11 64055575 64055575 C T GPR137 Silent p.A282A 0.21 TCGA-RP-A693-06 11 64122706 64122706 C T CCDC88B Silent p.S1380S 0.18 TCGA-RP-A693-06 11 6432225 6432225 G A APBB1 Missense_Mutation p.S118F 0.21 deleterious(0.01) possibly_damaging(0.557) TCGA-RP-A693-06 11 64717902 64717902 C T C11orf85 Missense_Mutation p.D50N 0.14 tolerated(0.09) benign(0.192) TCGA-RP-A693-06 11 65631190 65631190 C T MUS81 Missense_Mutation p.P320L 0.24 tolerated(0.08) benign(0.394) TCGA-RP-A693-06 11 66055103 66055103 C T YIF1A Silent p.R131R 0.27 TCGA-RP-A693-06 11 66055104 66055104 C T YIF1A Missense_Mutation p.R131Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-RP-A693-06 11 66191145 66191145 G A NPAS4 Missense_Mutation p.G302D 0.29 tolerated(0.47) benign(0.049) TCGA-RP-A693-06 11 66358171 66358171 G A CCDC87 Silent p.L772L 0.28 TCGA-RP-A693-06 11 67410116 67410116 G A ACY3 3'UTR 0.20 TCGA-RP-A693-06 11 68193597 68193597 C T LRP5 Silent p.G1193G 0.28 TCGA-RP-A693-06 11 69482296 69482296 A T ORAOV1 Silent p.L135L 0.21 TCGA-RP-A693-06 11 70178155 70178155 G A PPFIA1 Silent p.P389P 0.21 TCGA-RP-A693-06 11 70178156 70178156 G A PPFIA1 Missense_Mutation p.E390K 0.21 tolerated(0.06) probably_damaging(0.985) TCGA-RP-A693-06 11 70263215 70263215 A T CTTN Missense_Mutation p.H185L 0.30 deleterious(0) probably_damaging(0.99) TCGA-RP-A693-06 11 70332216 70332216 G A SHANK2 Silent p.P1395P 0.17 TCGA-RP-A693-06 11 72308565 72308565 G A PDE2A Missense_Mutation p.P141L 0.31 tolerated_low_confidence(0.16) benign(0.092) TCGA-RP-A693-06 11 7670097 7670097 A G PPFIBP2 Missense_Mutation p.K622E 0.26 tolerated(0.82) probably_damaging(0.993) TCGA-RP-A693-06 11 76969543 76969543 C T GDPD4 Missense_Mutation p.R251K 0.20 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 11 7818288 7818288 C T OR5P2 Missense_Mutation p.A68T 0.26 deleterious(0) benign(0.028) TCGA-RP-A693-06 11 8008800 8008800 G C EIF3F 5'UTR 0.22 TCGA-RP-A693-06 11 8008848 8008848 G A EIF3F 5'UTR 0.21 TCGA-RP-A693-06 11 8122513 8122513 G A TUB Silent p.V507V 0.26 TCGA-RP-A693-06 11 82698774 82698774 C T RAB30 Silent p.R72R 0.15 TCGA-RP-A693-06 11 82698775 82698775 C T RAB30 Missense_Mutation p.R72Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 11 82921388 82921388 G T ANKRD42 Missense_Mutation p.G98V 0.18 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 11 85436596 85436596 G A SYTL2 Missense_Mutation p.P302S 0.23 tolerated(0.13) benign(0.01) TCGA-RP-A693-06 11 92087088 92087088 G A FAT3 Missense_Mutation p.D604N 0.24 probably_damaging(0.999) TCGA-RP-A693-06 11 92498153 92498153 C T FAT3 Missense_Mutation p.P1365S 0.20 benign(0.132) TCGA-RP-A693-06 11 92577751 92577751 G A FAT3 Missense_Mutation p.E3740K 0.27 benign(0.366) TCGA-RP-A693-06 11 92881867 92881867 G A SLC36A4 Silent p.L451L 0.19 TCGA-RP-A693-06 11 92881868 92881868 G A SLC36A4 Silent p.V450V 0.18 TCGA-RP-A693-06 11 93148220 93148220 G A CCDC67 Silent p.S526S 0.23 TCGA-RP-A693-06 11 93834497 93834497 A G HEPHL1 Silent p.K857K 0.22 TCGA-RP-A693-06 12 103984697 103984697 C T STAB2 Missense_Mutation p.S35F 0.16 deleterious(0.03) benign(0.392) TCGA-RP-A693-06 12 104121097 104121097 C T STAB2 Missense_Mutation p.P1635L 0.12 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 12 104149445 104149445 G A STAB2 Silent p.G2312G 0.31 TCGA-RP-A693-06 12 104171508 104171508 C T NT5DC3 3'UTR 0.28 TCGA-RP-A693-06 12 110009485 110009485 G A MMAB Silent p.I55I 0.10 TCGA-RP-A693-06 12 11214051 11214051 C T TAS2R46 Nonsense_Mutation p.W281* 0.10 TCGA-RP-A693-06 12 11214052 11214052 C T TAS2R46 Nonsense_Mutation p.W281* 0.11 TCGA-RP-A693-06 12 112843836 112843836 G A RPL6 Silent p.L179L 0.22 TCGA-RP-A693-06 12 113425033 113425033 C T OAS2 Missense_Mutation p.S123F 0.11 tolerated(0.07) benign(0.001) TCGA-RP-A693-06 12 113444369 113444369 G A OAS2 Silent p.K540K 0.22 TCGA-RP-A693-06 12 113444370 113444370 G A OAS2 Missense_Mutation p.D541N 0.22 tolerated(0.14) benign(0.097) TCGA-RP-A693-06 12 113830740 113830740 C T SDS 3'UTR 0.13 TCGA-RP-A693-06 12 116406784 116406784 A C MED13L Silent p.P2062P 0.11 TCGA-RP-A693-06 12 117477006 117477006 C T TESC Missense_Mutation p.G193R 0.20 tolerated(0.12) benign(0.304) TCGA-RP-A693-06 12 117595803 117595803 C T FBXO21 Silent p.L471L 0.20 TCGA-RP-A693-06 12 117653111 117653111 C T NOS1 3'UTR 0.14 TCGA-RP-A693-06 12 118199202 118199202 C T KSR2 Silent p.R200R 0.13 TCGA-RP-A693-06 12 119968710 119968710 G A CCDC60 Missense_Mutation p.D465N 0.29 tolerated(0.11) probably_damaging(0.937) TCGA-RP-A693-06 12 122296618 122296618 G A HPD Missense_Mutation p.T2M 0.27 deleterious(0) probably_damaging(0.988) TCGA-RP-A693-06 12 122677396 122677396 C T LRRC43 Silent p.V398V 0.33 TCGA-RP-A693-06 12 122803822 122803822 G A CLIP1 Missense_Mutation p.S1108F 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-RP-A693-06 12 123983175 123983175 C T RILPL1 Silent p.E239E 0.27 TCGA-RP-A693-06 12 124155749 124155749 G A TCTN2 5'UTR 0.25 TCGA-RP-A693-06 12 124352581 124352581 G A DNAH10 Missense_Mutation p.M2360I 0.13 benign(0) TCGA-RP-A693-06 12 124848330 124848330 C T NCOR2 Silent p.R941R 0.12 TCGA-RP-A693-06 12 126138942 126138942 G A TMEM132B Missense_Mutation p.G975S 0.27 tolerated(0.11) possibly_damaging(0.527) TCGA-RP-A693-06 12 129558548 129558548 C T TMEM132D Missense_Mutation p.E1058K 0.22 deleterious(0.03) benign(0.025) TCGA-RP-A693-06 12 133226278 133226278 G A POLE Silent p.A1260A 0.34 TCGA-RP-A693-06 12 13526307 13526307 C T C12orf36 Nonsense_Mutation p.W83* 0.16 TCGA-RP-A693-06 12 3040232 3040235 CGCC TCT TULP3 Frame_Shift_Del p.A175Lfs*11 0.13 TCGA-RP-A693-06 12 30862850 30862850 G A CAPRIN2 Missense_Mutation p.L1074F 0.25 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 12 31945059 31945059 C T H3F3C Silent p.G14G 0.10 TCGA-RP-A693-06 12 32908828 32908828 G A YARS2 5'UTR 0.25 TCGA-RP-A693-06 12 347135 347135 C T SLC6A13 Missense_Mutation p.G174S 0.23 tolerated(0.48) benign(0.04) TCGA-RP-A693-06 12 43777489 43777489 C T ADAMTS20 Missense_Mutation p.E1557K 0.26 tolerated(0.39) benign(0.001) TCGA-RP-A693-06 12 47178348 47178348 G A SLC38A4 Missense_Mutation p.S157F 0.18 tolerated(0.05) probably_damaging(0.981) TCGA-RP-A693-06 12 48373328 48373328 C T COL2A1 Missense_Mutation p.G900E 0.13 unknown(0) TCGA-RP-A693-06 12 49445391 49445391 G A KMT2D Missense_Mutation p.P692L 0.17 unknown(0) TCGA-RP-A693-06 12 50037749 50037749 C T PRPF40B Missense_Mutation p.P850S 0.13 deleterious_low_confidence(0.03) benign(0.027) TCGA-RP-A693-06 12 52579170 52579170 G A KRT80 Nonsense_Mutation p.R168* 0.29 TCGA-RP-A693-06 12 53096991 53096991 C T KRT77 Silent p.G76G 0.20 TCGA-RP-A693-06 12 55863284 55863284 G A OR6C70 Silent p.I213I 0.08 TCGA-RP-A693-06 12 56088580 56088580 G A ITGA7 Silent p.V730V 0.12 TCGA-RP-A693-06 12 57552264 57552264 C T LRP1 Silent p.V547V 0.34 TCGA-RP-A693-06 12 57574529 57574529 C T LRP1 Silent p.V1822V 0.14 TCGA-RP-A693-06 12 57574530 57574530 C T LRP1 Missense_Mutation p.L1823F 0.14 possibly_damaging(0.86) TCGA-RP-A693-06 12 57584636 57584636 G A LRP1 Silent p.R2360R 0.20 TCGA-RP-A693-06 12 62986505 62986505 C T MON2 Silent p.S1710S 0.11 TCGA-RP-A693-06 12 6935985 6935985 G C GPR162 Missense_Mutation p.R461S 0.25 tolerated(0.37) benign(0.007) TCGA-RP-A693-06 12 7079825 7079825 A G PHB2 5'UTR 0.27 TCGA-RP-A693-06 12 71531774 71531774 C T TSPAN8 Missense_Mutation p.E135K 0.28 tolerated(0.37) benign(0.103) TCGA-RP-A693-06 12 7636052 7636052 C T CD163 Missense_Mutation p.G1000E 0.19 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 12 80623122 80623122 G A OTOGL Missense_Mutation p.R183Q 0.12 tolerated(0.21) benign(0.004) TCGA-RP-A693-06 12 80633149 80633149 C T OTOGL Missense_Mutation p.P319S 0.27 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 12 86199302 86199302 C T RASSF9 Silent p.R162R 0.25 TCGA-RP-A693-06 12 91348089 91348089 C T CCER1 Missense_Mutation p.G144D 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-RP-A693-06 12 96386562 96386562 G A HAL Missense_Mutation p.P204L 0.26 tolerated(0.26) benign(0.075) TCGA-RP-A693-06 12 96674610 96674610 G A CDK17 Nonsense_Mutation p.R504* 0.19 TCGA-RP-A693-06 12 97087561 97087561 G A C12orf55 Missense_Mutation p.R2109K 0.15 tolerated(1) benign(0.001) TCGA-RP-A693-06 13 102375174 102375174 G A FGF14 3'UTR 0.09 TCGA-RP-A693-06 13 103701777 103701777 C T SLC10A2 Missense_Mutation p.E261K 0.12 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 13 109704684 109704684 C T MYO16 Missense_Mutation p.S948L 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-RP-A693-06 13 29600791 29600791 C T MTUS2 Silent p.P662P 0.19 TCGA-RP-A693-06 13 29933544 29933544 G A MTUS2 Silent p.G1027G 0.14 TCGA-RP-A693-06 13 30423723 30423723 G A UBL3 5'UTR 0.29 TCGA-RP-A693-06 13 31231755 31231755 T C USPL1 Missense_Mutation p.L514P 0.35 tolerated(0.11) probably_damaging(0.958) TCGA-RP-A693-06 13 32760504 32760504 C T FRY Missense_Mutation p.R1143C 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-RP-A693-06 13 33686930 33686930 G A STARD13 Missense_Mutation p.P807L 0.29 deleterious(0) probably_damaging(0.957) TCGA-RP-A693-06 13 38266309 38266309 G A TRPC4 Missense_Mutation p.P354L 0.38 tolerated(0.15) benign(0.138) TCGA-RP-A693-06 13 42875847 42875847 C T AKAP11 Missense_Mutation p.P989S 0.07 tolerated(0.17) benign(0.002) TCGA-RP-A693-06 13 46287544 46287544 C T SPERT Silent p.F128F 0.07 TCGA-RP-A693-06 13 46543900 46543900 G A ZC3H13 Silent p.L927L 0.12 TCGA-RP-A693-06 13 76382049 76382049 C T LMO7 Missense_Mutation p.P311S 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 13 78202095 78202095 G A SCEL Missense_Mutation p.E548K 0.35 tolerated(0.27) benign(0.012) TCGA-RP-A693-06 14 102898250 102898250 C T TECPR2 Missense_Mutation p.S401F 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-RP-A693-06 14 106452920 106452920 C T IGHV1-2 Silent p.G34G 0.40 TCGA-RP-A693-06 14 106452921 106452921 C T IGHV1-2 Missense_Mutation p.G34E 0.39 deleterious(0) possibly_damaging(0.619) TCGA-RP-A693-06 14 106845492 106845492 C T IGHV3-35 Missense_Mutation p.G61E 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.737) TCGA-RP-A693-06 14 107131445 107131445 T A IGHV3-66 Missense_Mutation p.I13F 0.04 tolerated_low_confidence(0.06) benign(0.003) TCGA-RP-A693-06 14 107131453 107131453 A G IGHV3-66 Missense_Mutation p.L10P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-RP-A693-06 14 20345308 20345308 A C OR4K2 Silent p.V294V 0.14 TCGA-RP-A693-06 14 20979121 20979121 G A RNASE10 Missense_Mutation p.G164E 0.21 tolerated(0.17) possibly_damaging(0.728) TCGA-RP-A693-06 14 21862229 21862229 G A CHD8 Missense_Mutation p.R1909W 0.20 deleterious(0) probably_damaging(0.993) TCGA-RP-A693-06 14 22555198 22555198 C T TRAV23DV6 Silent p.S108S 0.19 TCGA-RP-A693-06 14 22616352 22616352 C T TRAV27 Silent p.I31I 0.20 TCGA-RP-A693-06 14 22938294 22938294 T G TRDV3 Missense_Mutation p.D27A 0.28 tolerated(0.06) benign(0.255) TCGA-RP-A693-06 14 23588207 23588207 C T CEBPE Missense_Mutation p.D32N 0.27 tolerated(0.3) benign(0.269) TCGA-RP-A693-06 14 26917366 26917366 C T NOVA1 Silent p.G441G 0.21 TCGA-RP-A693-06 14 33005010 33005010 A T AKAP6 Missense_Mutation p.E192V 0.24 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 14 39722039 39722039 C T MIA2 Missense_Mutation p.S552L 0.22 deleterious(0.04) benign(0.247) TCGA-RP-A693-06 14 42360998 42360998 A T LRFN5 Missense_Mutation p.K644I 0.21 deleterious_low_confidence(0.02) benign(0.163) TCGA-RP-A693-06 14 47351382 47351382 C T MDGA2 Missense_Mutation p.G761R 0.14 tolerated(0.09) probably_damaging(0.914) TCGA-RP-A693-06 14 51382068 51382068 G A PYGL Silent p.I463I 0.26 TCGA-RP-A693-06 14 55529405 55529405 C T MAPK1IP1L Missense_Mutation p.P30S 0.24 tolerated_low_confidence(0.79) benign(0.001) TCGA-RP-A693-06 14 61439052 61439052 G A TRMT5 3'UTR 0.21 TCGA-RP-A693-06 14 65198503 65198503 C G PLEKHG3 Missense_Mutation p.S312R 0.19 tolerated(0.17) benign(0.059) TCGA-RP-A693-06 14 65260221 65260221 C T SPTB Silent p.E720E 0.26 TCGA-RP-A693-06 14 68028917 68028917 C A PLEKHH1 Missense_Mutation p.S190Y 0.19 tolerated_low_confidence(0.38) benign(0.11) TCGA-RP-A693-06 14 70633997 70633997 G A SLC8A3 Silent p.S381S 0.24 TCGA-RP-A693-06 14 70634223 70634223 C T SLC8A3 Missense_Mutation p.G306E 0.20 tolerated(1) benign(0.016) TCGA-RP-A693-06 14 70634274 70634274 C T SLC8A3 Missense_Mutation p.G289E 0.21 tolerated(0.06) benign(0.11) TCGA-RP-A693-06 14 77275455 77275455 G A ANGEL1 Missense_Mutation p.P199L 0.25 deleterious(0) benign(0.342) TCGA-RP-A693-06 14 94109937 94109937 G A UNC79 Missense_Mutation p.D1842N 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A693-06 14 94964692 94964692 G A SERPINA12 Missense_Mutation p.L15F 0.28 deleterious(0.02) probably_damaging(0.976) TCGA-RP-A693-06 14 96875217 96875217 G A AK7 Missense_Mutation p.R146Q 0.43 tolerated(0.58) benign(0.004) TCGA-RP-A693-06 15 24921094 24921094 C T NPAP1 Missense_Mutation p.P27L 0.19 tolerated_low_confidence(1) possibly_damaging(0.851) TCGA-RP-A693-06 15 26806165 26806165 A T GABRB3 Missense_Mutation p.F332I 0.13 tolerated(0.08) benign(0.158) TCGA-RP-A693-06 15 26825589 26825589 C T GABRB3 Missense_Mutation p.D187N 0.11 tolerated(0.1) probably_damaging(0.969) TCGA-RP-A693-06 15 28436193 28436193 G A HERC2 Missense_Mutation p.S2856F 0.14 probably_damaging(0.912) TCGA-RP-A693-06 15 34355594 34355594 G A CHRM5 Missense_Mutation p.D226N 0.20 deleterious(0.04) possibly_damaging(0.889) TCGA-RP-A693-06 15 40866236 40866236 C T RPUSD2 Missense_Mutation p.P472S 0.12 tolerated(0.28) benign(0.014) TCGA-RP-A693-06 15 42364047 42364047 C T PLA2G4D Missense_Mutation p.E500K 0.14 deleterious(0) possibly_damaging(0.774) TCGA-RP-A693-06 15 42717175 42717175 T C ZNF106 Missense_Mutation p.S1660G 0.11 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 15 43767830 43767830 G A TP53BP1 Missense_Mutation p.P340S 0.27 deleterious(0) probably_damaging(0.991) TCGA-RP-A693-06 15 50211074 50211074 G A ATP8B4 Missense_Mutation p.A666V 0.27 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 15 51207706 51207706 C T AP4E1 Missense_Mutation p.S95F 0.16 deleterious(0) probably_damaging(0.954) TCGA-RP-A693-06 15 51535062 51535062 G A CYP19A1 Silent p.I16I 0.15 TCGA-RP-A693-06 15 51535152 51535152 G A CYP19A1 Intron 0.18 TCGA-RP-A693-06 15 51687128 51687128 A G GLDN Missense_Mutation p.K213R 0.16 tolerated(0.13) possibly_damaging(0.705) TCGA-RP-A693-06 15 51766660 51766660 G A DMXL2 Missense_Mutation p.S2365F 0.32 deleterious(0) possibly_damaging(0.888) TCGA-RP-A693-06 15 54685258 54685258 G A UNC13C Missense_Mutation p.D1576N 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.872) TCGA-RP-A693-06 15 57734568 57734568 C T CGNL1 Intron 0.22 TCGA-RP-A693-06 15 59179516 59179516 G A SLTM Missense_Mutation p.P867S 0.23 tolerated(0.93) benign(0.253) TCGA-RP-A693-06 15 60741265 60741265 G A NARG2 Missense_Mutation p.P634L 0.20 tolerated(0.08) possibly_damaging(0.656) TCGA-RP-A693-06 15 60789818 60789818 A C RORA Missense_Mutation p.L503V 0.11 deleterious(0.02) benign(0.372) TCGA-RP-A693-06 15 63132816 63132816 G A TLN2 3'UTR 0.13 TCGA-RP-A693-06 15 63855103 63855103 A G USP3 Silent p.V219V 0.19 TCGA-RP-A693-06 15 63855104 63855104 G A USP3 Missense_Mutation p.E220K 0.19 deleterious(0) probably_damaging(0.989) TCGA-RP-A693-06 15 64972386 64972386 T G ZNF609 Missense_Mutation p.S1258A 0.21 tolerated(0.96) benign(0.144) TCGA-RP-A693-06 15 67923225 67923225 G A MAP2K5 Splice_Site p.X182_splice 0.33 TCGA-RP-A693-06 15 68119347 68119347 C A SKOR1 Missense_Mutation p.P501H 0.27 deleterious_low_confidence(0.01) benign(0.009) TCGA-RP-A693-06 15 71535338 71535338 G A THSD4 Missense_Mutation p.G272E 0.09 deleterious(0.01) benign(0.034) TCGA-RP-A693-06 15 72637726 72637726 G A HEXA Intron 0.27 TCGA-RP-A693-06 15 74281004 74281004 G A STOML1 Missense_Mutation p.A177V 0.15 tolerated(0.5) benign(0.003) TCGA-RP-A693-06 15 75983079 75983079 G A CSPG4 Silent p.P109P 0.18 TCGA-RP-A693-06 15 78346416 78346416 G A TBC1D2B Silent p.P158P 0.32 TCGA-RP-A693-06 15 78346417 78346417 G A TBC1D2B Missense_Mutation p.P158L 0.33 tolerated(0.39) benign(0.004) TCGA-RP-A693-06 15 81666380 81666380 G A TMC3 Silent p.I13I 0.17 TCGA-RP-A693-06 15 85400323 85400323 A G ALPK3 Missense_Mutation p.N987S 0.14 tolerated_low_confidence(0.43) benign(0.002) TCGA-RP-A693-06 15 89021115 89021115 G A MRPS11 Missense_Mutation p.G164R 0.07 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 15 89401178 89401178 G A ACAN Missense_Mutation p.E1788K 0.17 tolerated(0.08) benign(0.263) TCGA-RP-A693-06 15 89401811 89401811 C T ACAN Missense_Mutation p.P1999S 0.23 tolerated(1) benign(0.057) TCGA-RP-A693-06 15 89848347 89848347 G A FANCI Silent p.E1020E 0.24 TCGA-RP-A693-06 15 91083279 91083279 T A CRTC3 Missense_Mutation p.F47L 0.19 tolerated(0.6) benign(0.009) TCGA-RP-A693-06 15 93015497 93015497 G A C15orf32 Missense_Mutation p.G40E 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-RP-A693-06 15 93588450 93588450 G A RGMA Silent p.A385A 0.38 TCGA-RP-A693-06 15 98514404 98514404 C T ARRDC4 Missense_Mutation p.S415F 0.22 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-RP-A693-06 15 99440126 99440126 G A IGF1R Missense_Mutation p.R365Q 0.26 deleterious(0) probably_damaging(0.962) TCGA-RP-A693-06 16 14042043 14042043 C A ERCC4 Missense_Mutation p.R864S 0.26 tolerated(0.07) benign(0.073) TCGA-RP-A693-06 16 14645905 14645905 G A PARN Missense_Mutation p.L485F 0.12 deleterious(0.03) probably_damaging(0.995) TCGA-RP-A693-06 16 14645906 14645906 G A PARN Silent p.S484S 0.12 TCGA-RP-A693-06 16 19488830 19488830 C T TMC5 Missense_Mutation p.S720F 0.20 deleterious(0) possibly_damaging(0.556) TCGA-RP-A693-06 16 19488831 19488831 T A TMC5 Silent p.S720S 0.19 TCGA-RP-A693-06 16 2048423 2048423 C T ZNF598 Missense_Mutation p.S842N 0.27 benign(0.041) TCGA-RP-A693-06 16 20559458 20559458 G A ACSM2B Missense_Mutation p.L342F 0.28 deleterious(0.05) benign(0.421) TCGA-RP-A693-06 16 21011596 21011596 C T DNAH3 Missense_Mutation p.R2124Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 16 22926750 22926750 G A HS3ST2 Missense_Mutation p.R324Q 0.22 deleterious(0.01) possibly_damaging(0.832) TCGA-RP-A693-06 16 23224033 23224033 C T SCNN1G Silent p.V443V 0.22 TCGA-RP-A693-06 16 23224034 23224034 C T SCNN1G Nonsense_Mutation p.Q444* 0.22 TCGA-RP-A693-06 16 239273 239273 G A LUC7L Missense_Mutation p.P347L 0.28 deleterious_low_confidence(0.05) unknown(0) TCGA-RP-A693-06 16 27356218 27356218 G A IL4R Missense_Mutation p.G80R 0.23 tolerated(0.18) benign(0.01) TCGA-RP-A693-06 16 27356219 27356219 G A IL4R Missense_Mutation p.G80E 0.25 tolerated(1) benign(0.005) TCGA-RP-A693-06 16 27761099 27761099 C T KIAA0556 Missense_Mutation p.P940S 0.13 tolerated(0.35) benign(0.008) TCGA-RP-A693-06 16 27761100 27761100 C T KIAA0556 Missense_Mutation p.P940L 0.13 tolerated(0.45) benign(0.005) TCGA-RP-A693-06 16 28508933 28508933 C T APOBR Silent p.P857P 0.29 TCGA-RP-A693-06 16 28618383 28618383 G A SULT1A1 Missense_Mutation p.R130C 0.27 deleterious(0) probably_damaging(0.946) TCGA-RP-A693-06 16 28997708 28997708 C T LAT Missense_Mutation p.S120F 0.20 deleterious_low_confidence(0.02) benign(0.078) TCGA-RP-A693-06 16 29909286 29909286 C T SEZ6L2 Silent p.E33E 0.19 TCGA-RP-A693-06 16 30409510 30409510 C T ZNF48 Silent p.A313A 0.25 TCGA-RP-A693-06 16 3139033 3139033 C T ZSCAN10 3'UTR 0.38 TCGA-RP-A693-06 16 31485177 31485177 C T TGFB1I1 Silent p.S68S 0.20 TCGA-RP-A693-06 16 31497532 31497532 G A SLC5A2 Silent p.L170L 0.23 TCGA-RP-A693-06 16 31510692 31510692 G A C16orf58 Silent p.F177F 0.26 TCGA-RP-A693-06 16 3306400 3306400 T A MEFV Missense_Mutation p.E63V 0.18 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 16 3306401 3306401 C T MEFV Missense_Mutation p.E63K 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-RP-A693-06 16 3340514 3340514 C T ZNF263 Missense_Mutation p.R670W 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-RP-A693-06 16 3562479 3562479 G T CLUAP1 Splice_Site p.X165_splice 0.16 TCGA-RP-A693-06 16 3614919 3614919 G A NLRC3 Missense_Mutation p.S87F 0.21 tolerated(0.08) benign(0.021) TCGA-RP-A693-06 16 421926 421926 C T TMEM8A 3'UTR 0.23 TCGA-RP-A693-06 16 4790201 4790201 G A C16orf71 Silent p.Q108Q 0.21 TCGA-RP-A693-06 16 48244997 48244997 G A ABCC11 Silent p.I490I 0.35 TCGA-RP-A693-06 16 4927108 4927108 C T UBN1 Silent p.G1087G 0.21 TCGA-RP-A693-06 16 4927109 4927109 C T UBN1 Missense_Mutation p.H1088Y 0.22 deleterious(0) possibly_damaging(0.486) TCGA-RP-A693-06 16 58543244 58543244 G A NDRG4 Missense_Mutation p.G337S 0.42 deleterious(0.02) probably_damaging(1) TCGA-RP-A693-06 16 58564169 58564169 G A CNOT1 Missense_Mutation p.P2087L 0.08 deleterious(0) possibly_damaging(0.566) TCGA-RP-A693-06 16 69970275 69970275 G A WWP2 Silent p.L679L 0.38 TCGA-RP-A693-06 16 69970276 69970276 G A WWP2 Missense_Mutation p.G680S 0.36 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 16 70841815 70841815 C T HYDIN Missense_Mutation p.E5012K 0.28 possibly_damaging(0.801) TCGA-RP-A693-06 16 70954793 70954793 C T HYDIN Missense_Mutation p.D2496N 0.44 probably_damaging(0.982) TCGA-RP-A693-06 16 71482856 71482856 G A ZNF23 Missense_Mutation p.H358Y 0.38 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 16 72827783 72827783 G A ZFHX3 Missense_Mutation p.S2933F 0.42 unknown(0) TCGA-RP-A693-06 16 75563351 75563351 G A CHST5 Missense_Mutation p.A311V 0.36 tolerated(0.1) benign(0.309) TCGA-RP-A693-06 16 80718765 80718765 G A CDYL2 Missense_Mutation p.P96S 0.42 tolerated(0.59) benign(0) TCGA-RP-A693-06 16 84482159 84482159 C T ATP2C2 Silent p.F508F 0.38 TCGA-RP-A693-06 16 89256815 89256815 G A CDH15 Silent p.R381R 0.37 TCGA-RP-A693-06 16 9014253 9014253 C T USP7 Missense_Mutation p.E192K 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-RP-A693-06 16 9857670 9857670 T C GRIN2A Missense_Mutation p.N1244S 0.20 tolerated(0.07) possibly_damaging(0.731) TCGA-RP-A693-06 17 10243690 10243690 C T MYH13 Silent p.G641G 0.20 TCGA-RP-A693-06 17 10415820 10415820 G A MYH1 Missense_Mutation p.S351F 0.17 deleterious(0) possibly_damaging(0.547) TCGA-RP-A693-06 17 12656535 12656535 A T MYOCD Nonsense_Mutation p.K644* 0.24 TCGA-RP-A693-06 17 12898119 12898119 G A ELAC2 Missense_Mutation p.S664F 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 17 1686376 1686376 A G SMYD4 Silent p.V738V 0.16 TCGA-RP-A693-06 17 18023615 18023615 C T MYO15A Silent p.L501L 0.19 TCGA-RP-A693-06 17 18058687 18058687 G A MYO15A Silent p.L2800L 0.35 TCGA-RP-A693-06 17 19317917 19317917 C T RNF112 Missense_Mutation p.R318C 0.24 deleterious(0) probably_damaging(0.976) TCGA-RP-A693-06 17 2233846 2233846 G A TSR1 Missense_Mutation p.P578L 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-RP-A693-06 17 26653898 26653898 G A TMEM97 3'UTR 0.24 TCGA-RP-A693-06 17 26692248 26692248 C T VTN 3'Flank 0.25 TCGA-RP-A693-06 17 26816316 26816316 C T SLC13A2 Missense_Mutation p.P63S 0.21 deleterious(0) possibly_damaging(0.764) TCGA-RP-A693-06 17 26851965 26851965 G A FOXN1 Missense_Mutation p.E190K 0.19 deleterious_low_confidence(0) benign(0.297) TCGA-RP-A693-06 17 33348757 33348757 G A RFFL Missense_Mutation p.S75L 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-RP-A693-06 17 34161572 34161572 C T TAF15 Missense_Mutation p.H215Y 0.23 tolerated_low_confidence(0.11) benign(0.346) TCGA-RP-A693-06 17 35444240 35444240 G A ACACA 3'UTR 0.16 TCGA-RP-A693-06 17 36486466 36486466 C T GPR179 Missense_Mutation p.E996K 0.21 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 17 36876823 36876823 G T MLLT6 Splice_Site p.X785_splice 0.29 TCGA-RP-A693-06 17 37814036 37814036 C A STARD3 Silent p.A102A 0.27 TCGA-RP-A693-06 17 37829900 37829900 G A PGAP3 Silent p.T187T 0.23 TCGA-RP-A693-06 17 37829901 37829901 G A PGAP3 Missense_Mutation p.T187I 0.22 tolerated(0.06) benign(0.41) TCGA-RP-A693-06 17 38192009 38192009 G T MED24 Missense_Mutation p.L98M 0.22 tolerated(0.06) possibly_damaging(0.776) TCGA-RP-A693-06 17 38192010 38192010 C T MED24 Silent p.L97L 0.21 TCGA-RP-A693-06 17 38792678 38792678 T C SMARCE1 Missense_Mutation p.Q113R 0.27 deleterious(0.02) benign(0.227) TCGA-RP-A693-06 17 39913974 39913974 G A JUP Silent p.A612A 0.18 TCGA-RP-A693-06 17 40665946 40665946 C T ATP6V0A1 Missense_Mutation p.S734F 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 17 40665947 40665947 C T ATP6V0A1 Silent p.S734S 0.21 TCGA-RP-A693-06 17 40947498 40947498 G A WNK4 Missense_Mutation p.R994Q 0.22 tolerated(0.52) benign(0.029) TCGA-RP-A693-06 17 40947499 40947499 G A WNK4 Silent p.R994R 0.23 TCGA-RP-A693-06 17 43552888 43552888 G A PLEKHM1 Silent p.F167F 0.16 TCGA-RP-A693-06 17 4446005 4446005 G C MYBBP1A Missense_Mutation p.T975S 0.15 tolerated(0.15) benign(0.412) TCGA-RP-A693-06 17 4575322 4575322 G A PELP1 Silent p.P988P 0.56 TCGA-RP-A693-06 17 46002387 46002387 G A SP2 Missense_Mutation p.G492E 0.22 tolerated(1) benign(0.008) TCGA-RP-A693-06 17 46198645 46198645 T G SNX11 Silent p.P196P 0.19 TCGA-RP-A693-06 17 4624431 4624431 C T ARRB2 3'UTR 0.19 TCGA-RP-A693-06 17 4720287 4720287 C T PLD2 Silent p.V546V 0.22 TCGA-RP-A693-06 17 47219444 47219444 G A B4GALNT2 Missense_Mutation p.G148E 0.17 tolerated(0.85) benign(0.001) TCGA-RP-A693-06 17 47237949 47237949 T C B4GALNT2 Missense_Mutation p.F298L 0.26 deleterious(0) possibly_damaging(0.688) TCGA-RP-A693-06 17 48246517 48246517 G A SGCA Missense_Mutation p.D217N 0.21 deleterious(0.05) benign(0.42) TCGA-RP-A693-06 17 48539889 48539889 C T ACSF2 Silent p.L245L 0.19 TCGA-RP-A693-06 17 50212365 50212365 A G CA10 Intron 0.23 TCGA-RP-A693-06 17 54892244 54892244 C T C17orf67 Missense_Mutation p.D48N 0.24 tolerated(0.05) probably_damaging(0.963) TCGA-RP-A693-06 17 55183091 55183091 C T AKAP1 Missense_Mutation p.P89L 0.16 tolerated(0.17) benign(0.001) TCGA-RP-A693-06 17 55962836 55962836 G A CUEDC1 Silent p.P30P 0.29 TCGA-RP-A693-06 17 56589829 56589829 G A MTMR4 Silent p.F44F 0.21 TCGA-RP-A693-06 17 57682846 57682846 C A DHX40 Missense_Mutation p.H671N 0.20 deleterious(0.04) possibly_damaging(0.808) TCGA-RP-A693-06 17 58524916 58524916 G A APPBP2 3'UTR 0.13 TCGA-RP-A693-06 17 649640 649640 G A GEMIN4 Missense_Mutation p.S548F 0.37 deleterious(0) possibly_damaging(0.857) TCGA-RP-A693-06 17 65890231 65890231 T C BPTF Silent p.V831V 0.23 TCGA-RP-A693-06 17 71281556 71281556 C T CDC42EP4 3'UTR 0.24 TCGA-RP-A693-06 17 72340914 72340914 G A KIF19 Silent p.L199L 0.32 TCGA-RP-A693-06 17 7296609 7296609 C T TMEM256-PLSCR3 Missense_Mutation p.E121K 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 17 72999951 72999951 C T CDR2L Missense_Mutation p.R394W 0.36 deleterious(0.01) probably_damaging(1) TCGA-RP-A693-06 17 7402801 7402801 C T POLR2A Silent p.F554F 0.26 TCGA-RP-A693-06 17 74133888 74133888 C T FOXJ1 Missense_Mutation p.G271E 0.21 deleterious(0.01) possibly_damaging(0.541) TCGA-RP-A693-06 17 76167991 76167991 G A SYNGR2 Missense_Mutation p.G217S 0.05 tolerated(0.12) possibly_damaging(0.828) TCGA-RP-A693-06 17 7752246 7752246 G A KDM6B Silent p.R880R 0.27 TCGA-RP-A693-06 17 79207828 79207828 G A ENTHD2 Missense_Mutation p.P110S 0.21 deleterious(0.01) benign(0.095) TCGA-RP-A693-06 17 7942715 7942715 C T ALOX15B Silent p.F53F 0.23 TCGA-RP-A693-06 17 7948580 7948580 C T ALOX15B Missense_Mutation p.H292Y 0.25 tolerated(1) benign(0.248) TCGA-RP-A693-06 18 18625312 18625312 G A ROCK1 Silent p.F177F 0.21 TCGA-RP-A693-06 18 28991317 28991317 G A DSG4 Missense_Mutation p.G773E 0.13 deleterious(0) benign(0.299) TCGA-RP-A693-06 18 30093636 30093636 T G WBP11P1 RNA 0.15 TCGA-RP-A693-06 18 43204725 43204725 G A SLC14A2 Silent p.S32S 0.22 TCGA-RP-A693-06 18 43224001 43224001 C T SLC14A2 Silent p.F409F 0.15 TCGA-RP-A693-06 18 43243801 43243801 C T SLC14A2 Missense_Mutation p.S468L 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-RP-A693-06 18 61627444 61627444 A G HMSD Missense_Mutation p.D92G 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-RP-A693-06 18 67759456 67759456 C T RTTN Missense_Mutation p.E1345K 0.23 tolerated(0.09) benign(0.229) TCGA-RP-A693-06 18 6959434 6959434 C T LAMA1 Missense_Mutation p.D2562N 0.12 tolerated(0.12) benign(0.443) TCGA-RP-A693-06 18 7034542 7034542 G A LAMA1 Missense_Mutation p.L663F 0.18 deleterious(0.02) probably_damaging(1) TCGA-RP-A693-06 18 71791797 71791797 C T FBXO15 Missense_Mutation p.E308K 0.24 deleterious(0.02) possibly_damaging(0.451) TCGA-RP-A693-06 18 72343356 72343356 C T ZNF407 Silent p.L127L 0.15 TCGA-RP-A693-06 18 74091529 74091529 G A ZNF516 Silent p.S847S 0.19 TCGA-RP-A693-06 19 10397744 10397744 G A ICAM4 Missense_Mutation p.G19E 0.50 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-RP-A693-06 19 12128746 12128746 T A ZNF433 Nonsense_Mutation p.K49* 0.26 TCGA-RP-A693-06 19 12298667 12298667 C T ZNF136 Nonsense_Mutation p.R492* 0.20 TCGA-RP-A693-06 19 12540880 12540880 G A ZNF443 3'UTR 0.19 TCGA-RP-A693-06 19 12767499 12767499 G A MAN2B1 Silent p.F510F 0.16 TCGA-RP-A693-06 19 12979653 12979653 G A MAST1 Missense_Mutation p.M921I 0.16 tolerated(0.74) benign(0.002) TCGA-RP-A693-06 19 14067018 14067018 C T DCAF15 Missense_Mutation p.A186V 0.31 deleterious(0.02) benign(0.109) TCGA-RP-A693-06 19 14574503 14574503 G T PKN1 Nonsense_Mutation p.E488* 0.26 TCGA-RP-A693-06 19 14810037 14810037 G A ZNF333 Missense_Mutation p.E84K 0.20 tolerated(0.19) benign(0.292) TCGA-RP-A693-06 19 14877186 14877186 A G EMR2 Silent p.N165N 0.26 TCGA-RP-A693-06 19 15365004 15365004 G A BRD4 Missense_Mutation p.S706F 0.20 benign(0.027) TCGA-RP-A693-06 19 15572085 15572085 C T RASAL3 Missense_Mutation p.G163E 0.18 tolerated(0.06) benign(0.124) TCGA-RP-A693-06 19 15655085 15655085 G A CYP4F22 Silent p.L377L 0.15 TCGA-RP-A693-06 19 15733939 15733939 G A CYP4F8 RNA 0.18 TCGA-RP-A693-06 19 16472743 16472743 G A EPS15L1 Silent p.P811P 0.19 TCGA-RP-A693-06 19 16860911 16860911 G A NWD1 Silent p.P486P 0.19 TCGA-RP-A693-06 19 17452520 17452520 C T GTPBP3 3'UTR 0.23 TCGA-RP-A693-06 19 1827472 1827472 G A REXO1 Missense_Mutation p.S439L 0.17 tolerated(0.14) benign(0.004) TCGA-RP-A693-06 19 18377320 18377320 G A KIAA1683 Missense_Mutation p.P344S 0.22 tolerated(0.07) benign(0.158) TCGA-RP-A693-06 19 18632909 18632909 C T ELL 5'UTR 0.18 TCGA-RP-A693-06 19 18632910 18632910 C T ELL 5'UTR 0.17 TCGA-RP-A693-06 19 18900092 18900092 G C COMP Silent p.P135P 0.43 TCGA-RP-A693-06 19 19231575 19231575 C A TMEM161A Silent p.L395L 0.27 TCGA-RP-A693-06 19 19653753 19653753 G A CILP2 Missense_Mutation p.G317R 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 19 19653754 19653754 G A CILP2 Missense_Mutation p.G317E 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 19 19655434 19655434 G A CILP2 Missense_Mutation p.E694K 0.27 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 19 19741117 19741117 G A GMIP Silent p.L856L 0.21 TCGA-RP-A693-06 19 20027423 20027423 C T ZNF93 Missense_Mutation p.P62L 0.19 deleterious(0.02) benign(0.167) TCGA-RP-A693-06 19 22363360 22363360 G A ZNF676 Missense_Mutation p.H387Y 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-RP-A693-06 19 2405425 2405425 G A TMPRSS9 Missense_Mutation p.E208K 0.21 deleterious(0.04) benign(0.155) TCGA-RP-A693-06 19 31040176 31040176 C T ZNF536 Missense_Mutation p.P1217L 0.22 deleterious_low_confidence(0.01) benign(0.219) TCGA-RP-A693-06 19 32845058 32845058 T C ZNF507 Missense_Mutation p.V441A 0.25 tolerated(0.45) benign(0.011) TCGA-RP-A693-06 19 35849942 35849942 G A FFAR3 Silent p.V50V 0.15 TCGA-RP-A693-06 19 3623981 3623981 G A CACTIN Missense_Mutation p.S116F 0.27 tolerated_low_confidence(0.09) unknown(0) TCGA-RP-A693-06 19 3661039 3661039 G A PIP5K1C Silent p.F131F 0.18 TCGA-RP-A693-06 19 37210766 37210766 C T ZNF567 Silent p.L349L 0.13 TCGA-RP-A693-06 19 37644471 37644471 G A ZNF585A Silent p.I55I 0.22 TCGA-RP-A693-06 19 37677766 37677766 A G ZNF585B Missense_Mutation p.Y225H 0.25 tolerated(0.52) probably_damaging(0.912) TCGA-RP-A693-06 19 37697981 37697981 G A ZNF585B Silent p.S11S 0.20 TCGA-RP-A693-06 19 38591780 38591780 C T SIPA1L3 Missense_Mutation p.P648L 0.24 deleterious(0.01) possibly_damaging(0.893) TCGA-RP-A693-06 19 38994972 38994972 G A RYR1 Nonsense_Mutation p.W2680* 0.30 TCGA-RP-A693-06 19 38996011 38996011 G A RYR1 Silent p.L2791L 0.35 TCGA-RP-A693-06 19 40722017 40722017 G A TTC9B 3'UTR 0.19 TCGA-RP-A693-06 19 4101103 4101103 C T MAP2K2 Missense_Mutation p.E207K 0.47 deleterious(0) possibly_damaging(0.775) TCGA-RP-A693-06 19 4101104 4101104 C T MAP2K2 Silent p.G206G 0.47 TCGA-RP-A693-06 19 41355729 41355729 C T CYP2A6 Missense_Mutation p.G113S 0.22 benign(0.239) TCGA-RP-A693-06 19 41518329 41518329 C T CYP2B6 Missense_Mutation p.P364L 0.25 deleterious(0) possibly_damaging(0.883) TCGA-RP-A693-06 19 42133418 42133418 G A CEACAM4 5'UTR 0.31 TCGA-RP-A693-06 19 4216990 4216990 C T ANKRD24 Silent p.T611T 0.52 TCGA-RP-A693-06 19 42740826 42740826 C T AC006486.9 Missense_Mutation p.E113K 0.22 deleterious(0.02) possibly_damaging(0.877) TCGA-RP-A693-06 19 436390 436390 G A SHC2 Silent p.I272I 0.23 TCGA-RP-A693-06 19 43674281 43674281 C T PSG5 Missense_Mutation p.G325E 0.26 tolerated(0.64) benign(0.005) TCGA-RP-A693-06 19 44807592 44807592 C T ZNF235 5'UTR 0.26 TCGA-RP-A693-06 19 44807593 44807593 C T ZNF235 5'UTR 0.27 TCGA-RP-A693-06 19 45004408 45004408 G A ZNF180 5'UTR 0.24 TCGA-RP-A693-06 19 45004409 45004409 G A ZNF180 5'UTR 0.24 TCGA-RP-A693-06 19 45316828 45316828 G A BCAM Silent p.E245E 0.20 TCGA-RP-A693-06 19 4540018 4540018 G A LRG1 Missense_Mutation p.S3F 0.16 tolerated_low_confidence(0.16) benign(0.011) TCGA-RP-A693-06 19 46289231 46289231 G A DMWD Missense_Mutation p.P508L 0.37 tolerated(0.21) benign(0.018) TCGA-RP-A693-06 19 46289232 46289232 G A DMWD Missense_Mutation p.P508S 0.36 tolerated(0.78) benign(0) TCGA-RP-A693-06 19 47503613 47503613 C T ARHGAP35 Missense_Mutation p.L1390F 0.19 tolerated(0.61) probably_damaging(0.998) TCGA-RP-A693-06 19 47774721 47774721 C T CCDC9 Missense_Mutation p.P461L 0.27 deleterious(0.02) unknown(0) TCGA-RP-A693-06 19 47774722 47774722 C T CCDC9 Silent p.P461P 0.26 TCGA-RP-A693-06 19 47823710 47823710 C T C5AR1 Silent p.L226L 0.25 TCGA-RP-A693-06 19 48790109 48790109 C T ZNF114 Missense_Mutation p.H410Y 0.32 deleterious(0) benign(0.066) TCGA-RP-A693-06 19 50367233 50367233 C T PNKP Silent p.G244G 0.15 TCGA-RP-A693-06 19 50713684 50713684 C T MYH14 Missense_Mutation p.P21L 0.38 tolerated_low_confidence(0.24) benign(0.279) TCGA-RP-A693-06 19 50905350 50905350 C T POLD1 Silent p.A186A 0.13 TCGA-RP-A693-06 19 51022473 51022473 C T LRRC4B Missense_Mutation p.R166Q 0.21 deleterious(0.04) possibly_damaging(0.543) TCGA-RP-A693-06 19 51483677 51483677 C T KLK7 Silent p.S96S 0.19 TCGA-RP-A693-06 19 51503820 51503820 C T KLK8 Silent p.E75E 0.21 TCGA-RP-A693-06 19 51503831 51503831 T C KLK8 Missense_Mutation p.R72G 0.20 tolerated(0.11) benign(0.009) TCGA-RP-A693-06 19 51509961 51509961 A T KLK9 Silent p.L73L 0.24 TCGA-RP-A693-06 19 51646001 51646001 G A SIGLEC7 Missense_Mutation p.M125I 0.27 tolerated(0.07) benign(0.018) TCGA-RP-A693-06 19 52249974 52249974 G A FPR1 Missense_Mutation p.P92S 0.20 deleterious(0) probably_damaging(0.969) TCGA-RP-A693-06 19 53015026 53015026 C T ZNF578 Silent p.F464F 0.30 TCGA-RP-A693-06 19 53057934 53057934 C T ZNF808 Missense_Mutation p.H589Y 0.20 deleterious(0) probably_damaging(0.981) TCGA-RP-A693-06 19 55146105 55146105 C T LILRB1 Silent p.H459H 0.19 TCGA-RP-A693-06 19 55147900 55147900 G A AC009892.10 Intron 0.33 TCGA-RP-A693-06 19 55378001 55378001 G A KIR3DL2 Missense_Mutation p.E395K 0.20 deleterious(0.02) possibly_damaging(0.802) TCGA-RP-A693-06 19 56090279 56090279 C T ZNF579 Missense_Mutation p.G243S 0.29 tolerated(0.35) possibly_damaging(0.846) TCGA-RP-A693-06 19 56539825 56539825 G A NLRP5 Silent p.G742G 0.17 TCGA-RP-A693-06 19 57640051 57640051 C T USP29 Missense_Mutation p.S3F 0.12 deleterious(0.02) possibly_damaging(0.496) TCGA-RP-A693-06 19 57646682 57646682 C T ZIM3 Silent p.E341E 0.18 TCGA-RP-A693-06 19 58059143 58059143 G A ZNF550 Missense_Mutation p.L116F 0.19 tolerated(0.65) possibly_damaging(0.648) TCGA-RP-A693-06 19 58059144 58059144 G A ZNF550 Silent p.S115S 0.19 TCGA-RP-A693-06 19 5844517 5844517 C T FUT3 Missense_Mutation p.D112N 0.26 deleterious(0) possibly_damaging(0.839) TCGA-RP-A693-06 19 58565086 58565086 G A ZSCAN1 Silent p.G298G 0.31 TCGA-RP-A693-06 19 58724359 58724359 C T ZNF274 Silent p.S603S 0.23 TCGA-RP-A693-06 19 58929271 58929271 C T ZNF584 3'UTR 0.27 TCGA-RP-A693-06 19 6454678 6454678 T A SLC25A23 Missense_Mutation p.Q178H 0.21 deleterious(0.01) benign(0.299) TCGA-RP-A693-06 19 7712089 7712089 C G STXBP2 Missense_Mutation p.F498L 0.22 deleterious(0.01) possibly_damaging(0.832) TCGA-RP-A693-06 19 831774 831774 C T AZU1 Missense_Mutation p.S218F 0.22 deleterious(0.02) possibly_damaging(0.88) TCGA-RP-A693-06 19 9020077 9020077 C T MUC16 Missense_Mutation p.R12473K 0.19 possibly_damaging(0.465) TCGA-RP-A693-06 19 9049206 9049206 G A MUC16 Nonsense_Mutation p.R10809* 0.23 TCGA-RP-A693-06 19 9050129 9050129 G A MUC16 Missense_Mutation p.P10501L 0.24 benign(0.007) TCGA-RP-A693-06 19 9057378 9057378 G A MUC16 Missense_Mutation p.S10023F 0.27 unknown(0) TCGA-RP-A693-06 19 9057632 9057632 C T MUC16 Silent p.V9938V 0.24 TCGA-RP-A693-06 19 9062543 9062543 G A MUC16 Silent p.N8301N 0.23 TCGA-RP-A693-06 19 9073956 9073956 A C MUC16 Missense_Mutation p.L4497W 0.20 unknown(0) TCGA-RP-A693-06 19 9086857 9086857 C T MUC16 Missense_Mutation p.G1653E 0.25 unknown(0) TCGA-RP-A693-06 19 9091108 9091108 G A MUC16 Missense_Mutation p.S236F 0.29 unknown(0) TCGA-RP-A693-06 19 9271514 9271514 C T ZNF317 Missense_Mutation p.S398F 0.21 deleterious(0) possibly_damaging(0.739) TCGA-RP-A693-06 19 9413102 9413102 G A ZNF699 Missense_Mutation p.L43F 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A693-06 1 100572932 100572932 C T SASS6 Missense_Mutation p.E442K 0.11 tolerated(0.08) benign(0.391) TCGA-RP-A693-06 1 10067711 10067711 C T RBP7 Missense_Mutation p.H53Y 0.26 deleterious(0) possibly_damaging(0.616) TCGA-RP-A693-06 1 109772065 109772065 C T SARS Silent p.V106V 0.18 TCGA-RP-A693-06 1 109772143 109772143 C T SARS Silent p.L132L 0.22 TCGA-RP-A693-06 1 109772144 109772144 C T SARS Nonsense_Mutation p.R133* 0.22 TCGA-RP-A693-06 1 112302037 112302037 C T DDX20 Missense_Mutation p.P138S 0.16 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 1 112524457 112524457 A T KCND3 Missense_Mutation p.F298I 0.15 deleterious(0) possibly_damaging(0.637) TCGA-RP-A693-06 1 114372236 114372236 C T PTPN22 Missense_Mutation p.G743E 0.24 tolerated(0.1) probably_damaging(0.962) TCGA-RP-A693-06 1 1179872 1179872 G A FAM132A Silent p.S61S 0.21 TCGA-RP-A693-06 1 118039386 118039386 C T MAN1A2 Missense_Mutation p.A429V 0.20 deleterious(0) probably_damaging(0.923) TCGA-RP-A693-06 1 11810168 11810168 C T AGTRAP Silent p.Y133Y 0.16 TCGA-RP-A693-06 1 11810169 11810169 C T AGTRAP Nonsense_Mutation p.Q134* 0.16 TCGA-RP-A693-06 1 11850910 11850910 C T MTHFR Missense_Mutation p.E600K 0.28 tolerated(0.14) benign(0.005) TCGA-RP-A693-06 1 118629532 118629532 G A SPAG17 Missense_Mutation p.L487F 0.27 deleterious(0.02) benign(0.302) TCGA-RP-A693-06 1 120285521 120285521 C A PHGDH Missense_Mutation p.A434D 0.20 tolerated(0.12) benign(0.136) TCGA-RP-A693-06 1 12567343 12567343 C T VPS13D Intron 0.20 TCGA-RP-A693-06 1 144918898 144918898 G A PDE4DIP Nonsense_Mutation p.R430* 0.10 TCGA-RP-A693-06 1 145457937 145457937 G A POLR3GL Missense_Mutation p.P108L 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-RP-A693-06 1 145474442 145474442 C T ANKRD34A Missense_Mutation p.P372S 0.11 tolerated(0.42) benign(0.113) TCGA-RP-A693-06 1 150525595 150525595 G A ADAMTSL4 Silent p.Q100Q 0.11 TCGA-RP-A693-06 1 151993687 151993687 C T NBPF18P RNA 0.12 TCGA-RP-A693-06 1 151993688 151993688 C T NBPF18P RNA 0.10 TCGA-RP-A693-06 1 152281867 152281867 G A FLG Missense_Mutation p.S1832L 0.24 benign(0.32) TCGA-RP-A693-06 1 153660549 153660549 C T NPR1 Missense_Mutation p.R757W 0.26 deleterious(0.02) possibly_damaging(0.901) TCGA-RP-A693-06 1 154042844 154042844 C T NUP210L Nonsense_Mutation p.W820* 0.30 TCGA-RP-A693-06 1 154461772 154461772 G A SHE Missense_Mutation p.P260L 0.19 deleterious(0.01) possibly_damaging(0.461) TCGA-RP-A693-06 1 155003670 155003670 G A DCST2 Silent p.P260P 0.17 TCGA-RP-A693-06 1 156845885 156845885 C T NTRK1 Silent p.I505I 0.19 TCGA-RP-A693-06 1 158262552 158262552 T A CD1C Missense_Mutation p.D259E 0.23 deleterious(0) probably_damaging(0.993) TCGA-RP-A693-06 1 158323701 158323701 G A CD1E 5'UTR 0.50 TCGA-RP-A693-06 1 158450088 158450088 G A OR10R2 Missense_Mutation p.D141N 0.26 deleterious(0.01) probably_damaging(1) TCGA-RP-A693-06 1 159505183 159505183 C T OR10J5 Silent p.V205V 0.16 TCGA-RP-A693-06 1 159684318 159684318 C T CRP 5'UTR 0.31 TCGA-RP-A693-06 1 160589593 160589593 C T SLAMF1 Silent p.T279T 0.16 TCGA-RP-A693-06 1 161198754 161198754 G A TOMM40L Missense_Mutation p.D266N 0.30 tolerated(0.07) possibly_damaging(0.475) TCGA-RP-A693-06 1 161332149 161332149 C T SDHC Missense_Mutation p.P146S 0.19 tolerated(0.2) benign(0.014) TCGA-RP-A693-06 1 16907280 16907280 G A NBPF1 Silent p.S517S 0.03 TCGA-RP-A693-06 1 173794477 173794477 C T DARS2 Missense_Mutation p.S37L 0.19 deleterious(0.04) benign(0.034) TCGA-RP-A693-06 1 173886390 173886390 G A SERPINC1 Missense_Mutation p.S3F 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RP-A693-06 1 17429530 17429530 C T PADI2 Missense_Mutation p.E101K 0.33 tolerated(0.7) benign(0.008) TCGA-RP-A693-06 1 176526129 176526129 A C PAPPA2 Missense_Mutation p.K224T 0.26 tolerated(0.14) benign(0.348) TCGA-RP-A693-06 1 176734809 176734809 C T PAPPA2 Missense_Mutation p.H1387Y 0.24 deleterious(0.04) benign(0.01) TCGA-RP-A693-06 1 176998844 176998844 G A ASTN1 Missense_Mutation p.S349F 0.25 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-RP-A693-06 1 179587748 179587748 C T TDRD5 Silent p.F282F 0.20 TCGA-RP-A693-06 1 186915786 186915786 C T PLA2G4A Missense_Mutation p.P351S 0.10 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 1 18691905 18691905 G A IGSF21 Silent p.T243T 0.23 TCGA-RP-A693-06 1 196963300 196963300 C T CFHR5 Missense_Mutation p.S174F 0.20 deleterious(0.01) probably_damaging(0.913) TCGA-RP-A693-06 1 197021902 197021902 C T F13B Missense_Mutation p.E473K 0.27 deleterious(0) probably_damaging(0.91) TCGA-RP-A693-06 1 200948779 200948779 G A KIF21B Silent p.P1348P 0.19 TCGA-RP-A693-06 1 200954086 200954086 C T KIF21B Missense_Mutation p.G1235E 0.22 deleterious(0.04) benign(0.224) TCGA-RP-A693-06 1 201868727 201868727 C T LMOD1 Missense_Mutation p.D472N 0.38 probably_damaging(0.997) TCGA-RP-A693-06 1 201915405 201915405 C T LMOD1 Missense_Mutation p.E22K 0.43 benign(0.05) TCGA-RP-A693-06 1 201958123 201958123 C T RNPEP Missense_Mutation p.P180L 0.26 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 1 203317371 203317371 C T FMOD Missense_Mutation p.A10T 0.16 tolerated(0.28) benign(0.056) TCGA-RP-A693-06 1 203317372 203317372 C T FMOD Silent p.L9L 0.17 TCGA-RP-A693-06 1 204945964 204945964 C T NFASC Intron 0.35 TCGA-RP-A693-06 1 206243202 206243202 G A C1orf186 Silent p.F20F 0.21 TCGA-RP-A693-06 1 207510105 207510105 A G CD55 Silent p.T307T 0.24 TCGA-RP-A693-06 1 2082315 2082315 C T PRKCZ Silent p.I258I 0.26 TCGA-RP-A693-06 1 211842481 211842481 A G NEK2 Missense_Mutation p.L320P 0.24 deleterious(0) probably_damaging(0.926) TCGA-RP-A693-06 1 212241644 212241644 C T DTL Silent p.Y264Y 0.21 TCGA-RP-A693-06 1 212241645 212241645 C T DTL Missense_Mutation p.P265S 0.21 tolerated(0.12) benign(0.186) TCGA-RP-A693-06 1 214816611 214816611 C T CENPF Nonsense_Mutation p.Q1644* 0.19 TCGA-RP-A693-06 1 220089196 220089196 G A SLC30A10 Silent p.I351I 0.23 TCGA-RP-A693-06 1 223284741 223284741 C T TLR5 Missense_Mutation p.D545N 0.26 tolerated(0.19) benign(0.005) TCGA-RP-A693-06 1 225140444 225140444 C T DNAH14 Nonsense_Mutation p.Q14* 0.20 TCGA-RP-A693-06 1 227213842 227213842 G A CDC42BPA Missense_Mutation p.P1447S 0.17 tolerated(0.7) benign(0.053) TCGA-RP-A693-06 1 228210370 228210370 C T WNT3A Missense_Mutation p.S25L 0.25 tolerated(0.16) benign(0.109) TCGA-RP-A693-06 1 228582669 228582669 A C TRIM11 Missense_Mutation p.F382V 0.19 tolerated(0.13) possibly_damaging(0.771) TCGA-RP-A693-06 1 231349659 231349659 C T TRIM67 Missense_Mutation p.P741L 0.20 deleterious(0) probably_damaging(0.94) TCGA-RP-A693-06 1 23233410 23233410 C T EPHB2 Missense_Mutation p.T700I 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-RP-A693-06 1 23233411 23233411 C T EPHB2 Silent p.T700T 0.19 TCGA-RP-A693-06 1 233092129 233092129 T C NTPCR Silent p.V78V 0.25 TCGA-RP-A693-06 1 233807144 233807144 C T KCNK1 Silent p.I293I 0.26 TCGA-RP-A693-06 1 234444847 234444847 G A SLC35F3 Silent p.R203R 0.12 TCGA-RP-A693-06 1 234529414 234529414 G A TARBP1 Silent p.I1471I 0.22 TCGA-RP-A693-06 1 235969138 235969138 G A LYST Missense_Mutation p.L1100F 0.22 deleterious(0.05) benign(0.011) TCGA-RP-A693-06 1 23760146 23760146 C T ASAP3 Silent p.K664K 0.17 TCGA-RP-A693-06 1 241797606 241797606 G A CHML Missense_Mutation p.A488V 0.21 tolerated(0.06) benign(0.156) TCGA-RP-A693-06 1 244572824 244572824 G A ADSS 3'UTR 0.20 TCGA-RP-A693-06 1 247836279 247836279 C T OR13G1 Missense_Mutation p.G22E 0.21 tolerated(0.32) benign(0.002) TCGA-RP-A693-06 1 248201644 248201644 C T OR2L2 Silent p.F25F 0.17 TCGA-RP-A693-06 1 248525363 248525363 C T OR2T4 Missense_Mutation p.P161S 0.24 deleterious(0.01) possibly_damaging(0.831) TCGA-RP-A693-06 1 249151675 249151675 T C ZNF692 Missense_Mutation p.K83R 0.17 deleterious(0.05) benign(0.439) TCGA-RP-A693-06 1 25599030 25599030 G T RHD 5'UTR 0.23 TCGA-RP-A693-06 1 26694126 26694126 C T ZNF683 Missense_Mutation p.G93S 0.29 tolerated(0.2) benign(0.094) TCGA-RP-A693-06 1 26694127 26694127 C T ZNF683 Silent p.L92L 0.30 TCGA-RP-A693-06 1 27875430 27875430 C T AHDC1 Missense_Mutation p.G1066D 0.29 deleterious(0) probably_damaging(0.969) TCGA-RP-A693-06 1 27875431 27875431 C T AHDC1 Missense_Mutation p.G1066S 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-RP-A693-06 1 28206198 28206198 G A THEMIS2 Silent p.L93L 0.17 TCGA-RP-A693-06 1 28285022 28285022 G A SMPDL3B Silent p.A347A 0.21 TCGA-RP-A693-06 1 28285052 28285052 C T SMPDL3B Silent p.L357L 0.24 TCGA-RP-A693-06 1 31347219 31347219 T A SDC3 Missense_Mutation p.N363Y 0.35 deleterious(0) unknown(0) TCGA-RP-A693-06 1 33236283 33236283 C T KIAA1522 Silent p.P501P 0.27 TCGA-RP-A693-06 1 34068090 34068090 G A CSMD2 Missense_Mutation p.P2199S 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-RP-A693-06 1 35250355 35250355 C T GJB3 5'UTR 0.29 TCGA-RP-A693-06 1 35250356 35250356 C T GJB3 5'UTR 0.29 TCGA-RP-A693-06 1 35331759 35331759 G A DLGAP3 Silent p.S955S 0.38 TCGA-RP-A693-06 1 38166179 38166179 C A CDCA8 Missense_Mutation p.L137I 0.14 tolerated(0.41) benign(0.037) TCGA-RP-A693-06 1 42048940 42048940 G A HIVEP3 Missense_Mutation p.S510L 0.18 benign(0.002) TCGA-RP-A693-06 1 47276531 47276531 C T CYP4B1 Missense_Mutation p.P78S 0.27 tolerated(0.06) possibly_damaging(0.86) TCGA-RP-A693-06 1 47338945 47338945 C T CYP4Z2P RNA 0.12 TCGA-RP-A693-06 1 54371833 54371833 G A DIO1 Missense_Mutation p.A183T 0.23 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 1 54661376 54661376 C T CYB5RL 5'UTR 0.18 TCGA-RP-A693-06 1 57476441 57476441 G A DAB1 Missense_Mutation p.S532F 0.28 tolerated(0.39) possibly_damaging(0.847) TCGA-RP-A693-06 1 57480641 57480641 T G DAB1 Silent p.A453A 0.32 TCGA-RP-A693-06 1 62299433 62299433 G A INADL Silent p.L696L 0.25 TCGA-RP-A693-06 1 65113662 65113662 C T CACHD1 Silent p.N394N 0.28 TCGA-RP-A693-06 1 67411991 67411991 T C MIER1 Intron 0.20 TCGA-RP-A693-06 1 68947832 68947832 G A DEPDC1 Silent p.L553L 0.15 TCGA-RP-A693-06 1 72076812 72076812 C T NEGR1 Missense_Mutation p.E229K 0.22 tolerated(0.38) benign(0.116) TCGA-RP-A693-06 1 74670263 74670263 T G FPGT Missense_Mutation p.F178V 0.20 tolerated(0.34) benign(0.021) TCGA-RP-A693-06 1 78395051 78395051 C T NEXN Silent p.Y305Y 0.12 TCGA-RP-A693-06 1 78430375 78430375 G A FUBP1 Missense_Mutation p.R265W 0.20 deleterious(0) probably_damaging(0.963) TCGA-RP-A693-06 1 82402461 82402461 C T LPHN2 Missense_Mutation p.P113S 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-RP-A693-06 1 85121526 85121526 G A SSX2IP Silent p.L460L 0.24 TCGA-RP-A693-06 1 85665947 85665947 T A SYDE2 Missense_Mutation p.I245F 0.17 deleterious_low_confidence(0.04) benign(0.016) TCGA-RP-A693-06 1 85665966 85665966 C T SYDE2 Silent p.S238S 0.21 TCGA-RP-A693-06 1 86850382 86850382 G A ODF2L Missense_Mutation p.L117F 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-RP-A693-06 1 892591 892591 G A NOC2L Missense_Mutation p.P81L 0.17 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 1 90048330 90048330 C T LRRC8B Silent p.L41L 0.25 TCGA-RP-A693-06 1 91781717 91781717 C T HFM1 Missense_Mutation p.G975R 0.16 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 1 91989597 91989597 G A CDC7 Splice_Site p.X444_splice 0.30 TCGA-RP-A693-06 1 92442873 92442873 C T BRDT Missense_Mutation p.P298S 0.19 tolerated(0.11) probably_damaging(0.953) TCGA-RP-A693-06 1 9416313 9416313 C A SPSB1 Missense_Mutation p.D121E 0.19 tolerated(1) benign(0) TCGA-RP-A693-06 1 957730 957730 G A AGRN Silent p.V117V 0.23 TCGA-RP-A693-06 1 97839129 97839129 C T DPYD Silent p.L682L 0.17 TCGA-RP-A693-06 1 980798 980798 C T AGRN Nonsense_Mutation p.Q811* 0.15 TCGA-RP-A693-06 1 981199 981199 C T AGRN Missense_Mutation p.P875S 0.25 tolerated(0.88) possibly_damaging(0.876) TCGA-RP-A693-06 1 98205973 98205973 G A DPYD Missense_Mutation p.S99L 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-RP-A693-06 20 10036179 10036179 G A ANKEF1 Silent p.E734E 0.23 TCGA-RP-A693-06 20 25193953 25193953 G A ENTPD6 Missense_Mutation p.D170N 0.16 tolerated(0.46) benign(0.014) TCGA-RP-A693-06 20 2944915 2944915 C T PTPRA Intron 0.18 TCGA-RP-A693-06 20 30380610 30380610 C T TPX2 Nonsense_Mutation p.R496* 0.16 TCGA-RP-A693-06 20 30510808 30510808 G A TTLL9 Missense_Mutation p.E206K 0.20 deleterious(0.01) possibly_damaging(0.6) TCGA-RP-A693-06 20 31590456 31590456 G A SUN5 Silent p.L50L 0.19 TCGA-RP-A693-06 20 31811762 31811762 G A BPIFA3 Silent p.E91E 0.27 TCGA-RP-A693-06 20 33586685 33586685 C T MYH7B Missense_Mutation p.A1428V 0.15 probably_damaging(0.999) TCGA-RP-A693-06 20 34021881 34021881 C T GDF5 Silent p.T444T 0.30 TCGA-RP-A693-06 20 35060381 35060381 C T DLGAP4 Silent p.P87P 0.23 TCGA-RP-A693-06 20 35207254 35207254 C T TGIF2 Missense_Mutation p.P26L 0.22 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 20 3677379 3677379 G A SIGLEC1 Missense_Mutation p.S846F 0.17 tolerated(0.18) benign(0.078) TCGA-RP-A693-06 20 40118553 40118553 G A CHD6 Silent p.I515I 0.27 TCGA-RP-A693-06 20 41385271 41385271 C T PTPRT Nonsense_Mutation p.W230* 0.41 TCGA-RP-A693-06 20 44048200 44048200 C T PIGT Silent p.S217S 0.26 TCGA-RP-A693-06 20 44174522 44174522 G A EPPIN Intron 0.25 TCGA-RP-A693-06 20 48156191 48156191 G T PTGIS Missense_Mutation p.R197S 0.24 tolerated(0.34) possibly_damaging(0.502) TCGA-RP-A693-06 20 50140113 50140113 G A NFATC2 Nonsense_Mutation p.R223* 0.21 TCGA-RP-A693-06 20 5283370 5283370 G A PROKR2 Silent p.I157I 0.27 TCGA-RP-A693-06 20 61598209 61598209 C T SLC17A9 Intron 0.24 TCGA-RP-A693-06 21 16337534 16337534 A C NRIP1 Missense_Mutation p.C994G 0.17 tolerated(0.61) benign(0.001) TCGA-RP-A693-06 21 27124539 27124539 C T GABPA Missense_Mutation p.P183S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-RP-A693-06 21 27124540 27124540 C T GABPA Missense_Mutation p.P183L 0.21 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 21 27130471 27130471 C T GABPA Missense_Mutation p.P235L 0.20 deleterious(0) probably_damaging(0.966) TCGA-RP-A693-06 21 28211921 28211921 G A ADAMTS1 Silent p.F671F 0.17 TCGA-RP-A693-06 21 33044427 33044427 G A SCAF4 Missense_Mutation p.P910L 0.26 unknown(0) TCGA-RP-A693-06 21 33044428 33044428 G A SCAF4 Missense_Mutation p.P910S 0.25 unknown(0) TCGA-RP-A693-06 21 43905788 43905788 C T RSPH1 Silent p.L164L 0.13 TCGA-RP-A693-06 21 44478306 44478306 C T CBS Silent p.K472K 0.18 TCGA-RP-A693-06 21 47558458 47558458 G A FTCD Silent p.A469A 0.21 TCGA-RP-A693-06 22 17309722 17309722 C T HSFY1P1 RNA 0.30 TCGA-RP-A693-06 22 19127496 19127496 G A DGCR14 Silent p.L148L 0.24 TCGA-RP-A693-06 22 24431891 24431891 G A CABIN1 Splice_Site 0.15 TCGA-RP-A693-06 22 25599758 25599758 C T CRYBB3 Missense_Mutation p.R75C 0.12 tolerated(0.29) benign(0.011) TCGA-RP-A693-06 22 25623892 25623892 G A CRYBB2 Nonsense_Mutation p.W82* 0.26 TCGA-RP-A693-06 22 29886060 29886060 G A NEFH Missense_Mutation p.E811K 0.35 tolerated_low_confidence(0.07) unknown(0) TCGA-RP-A693-06 22 30864570 30864570 G A SEC14L3 Silent p.T116T 0.46 TCGA-RP-A693-06 22 30864571 30864571 G A SEC14L3 Missense_Mutation p.T116I 0.46 deleterious(0.05) possibly_damaging(0.908) TCGA-RP-A693-06 22 32218714 32218714 C T DEPDC5 Missense_Mutation p.S681F 0.47 deleterious(0.03) benign(0.408) TCGA-RP-A693-06 22 32218715 32218715 C T DEPDC5 Silent p.S681S 0.45 TCGA-RP-A693-06 22 38340481 38340481 C T C22orf23 Missense_Mutation p.M175I 0.35 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 22 41864691 41864691 G A PHF5A 5'UTR 0.60 TCGA-RP-A693-06 22 42609913 42609913 G A TCF20 Missense_Mutation p.P467S 0.50 probably_damaging(0.999) TCGA-RP-A693-06 22 43089378 43089378 C T A4GALT Missense_Mutation p.D194N 0.16 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 2 102959855 102959855 G A IL1RL1 Missense_Mutation p.R317K 0.26 tolerated(0.14) benign(0.097) TCGA-RP-A693-06 2 106690397 106690397 C T C2orf40 Silent p.F61F 0.26 TCGA-RP-A693-06 2 107040817 107040817 C T RGPD3 Silent p.L1202L 0.25 TCGA-RP-A693-06 2 108488179 108488179 C T RGPD4 Missense_Mutation p.P1240L 0.16 deleterious(0.04) benign(0.003) TCGA-RP-A693-06 2 108872095 108872095 C T SULT1C3 Missense_Mutation p.S156F 0.32 deleterious(0) probably_damaging(0.914) TCGA-RP-A693-06 2 112566715 112566715 G A ANAPC1 Missense_Mutation p.A1214V 0.20 deleterious(0) possibly_damaging(0.856) TCGA-RP-A693-06 2 113785528 113785528 C T IL36B Intron 0.19 TCGA-RP-A693-06 2 11780624 11780624 C T GREB1 3'UTR 0.20 TCGA-RP-A693-06 2 1204859 1204859 C T SNTG2 Missense_Mutation p.S221F 0.25 deleterious(0.02) possibly_damaging(0.59) TCGA-RP-A693-06 2 130832540 130832540 G A POTEF Silent p.A835A 0.44 TCGA-RP-A693-06 2 131521315 131521315 C T AMER3 Missense_Mutation p.A557V 0.17 tolerated(0.24) benign(0.002) TCGA-RP-A693-06 2 132021425 132021425 G A POTEE Silent p.E799E 0.12 TCGA-RP-A693-06 2 135745406 135745406 C T MAP3K19 Missense_Mutation p.E346K 0.22 tolerated(0.14) benign(0.015) TCGA-RP-A693-06 2 136537915 136537915 G A UBXN4 Missense_Mutation p.E450K 0.24 tolerated(0.2) benign(0.094) TCGA-RP-A693-06 2 136594187 136594187 G A LCT Nonsense_Mutation p.Q185* 0.24 TCGA-RP-A693-06 2 136594188 136594188 G A LCT Silent p.H184H 0.23 TCGA-RP-A693-06 2 137813998 137813998 G A THSD7B Missense_Mutation p.G50R 0.19 deleterious(0) probably_damaging(0.979) TCGA-RP-A693-06 2 141625402 141625402 A C LRP1B Missense_Mutation p.S1446A 0.24 benign(0.097) TCGA-RP-A693-06 2 141777563 141777563 G A LRP1B Missense_Mutation p.S633F 0.15 benign(0.075) TCGA-RP-A693-06 2 149226939 149226939 C T MBD5 Missense_Mutation p.P476L 0.15 deleterious(0) possibly_damaging(0.851) TCGA-RP-A693-06 2 158165144 158165144 C T GALNT5 Silent p.I862I 0.24 TCGA-RP-A693-06 2 160035353 160035353 C T TANC1 Missense_Mutation p.P730L 0.20 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 2 160692157 160692157 C T LY75-CD302 Splice_Site p.X1170_splice 0.17 TCGA-RP-A693-06 2 160808037 160808037 G A PLA2R1 Silent p.T1118T 0.23 TCGA-RP-A693-06 2 169711862 169711862 G A NOSTRIN Missense_Mutation p.E343K 0.20 deleterious(0.01) probably_damaging(0.96) TCGA-RP-A693-06 2 170428363 170428363 G C FASTKD1 Missense_Mutation p.N59K 0.32 deleterious(0) possibly_damaging(0.798) TCGA-RP-A693-06 2 173883428 173883428 C T RAPGEF4 Missense_Mutation p.R685W 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-RP-A693-06 2 175673651 175673655 TAGGG - CHN1 Nonsense_Mutation p.Y360* 0.17 TCGA-RP-A693-06 2 177162612 177162612 C T MTX2 Missense_Mutation p.L42F 0.12 deleterious(0) possibly_damaging(0.816) TCGA-RP-A693-06 2 179424738 179424738 C T TTN Silent p.G28707G 0.32 TCGA-RP-A693-06 2 179433788 179433788 C T TTN Missense_Mutation p.D25691N 0.22 TCGA-RP-A693-06 2 179584104 179584104 C T TTN Missense_Mutation p.E8005K 0.27 TCGA-RP-A693-06 2 179605281 179605281 T C TTN Missense_Mutation p.T4227A 0.18 TCGA-RP-A693-06 2 182542499 182542499 G A NEUROD1 3'UTR 0.21 TCGA-RP-A693-06 2 182542500 182542500 G A NEUROD1 3'UTR 0.21 TCGA-RP-A693-06 2 183387007 183387007 C T PDE1A Missense_Mutation p.G33R 0.28 tolerated_low_confidence(0.27) benign(0.299) TCGA-RP-A693-06 2 186670256 186670256 C T FSIP2 Missense_Mutation p.S5497L 0.19 probably_damaging(0.997) TCGA-RP-A693-06 2 187540610 187540610 C T ITGAV Missense_Mutation p.P962S 0.13 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 2 189868179 189868179 C T COL3A1 Missense_Mutation p.P866S 0.31 unknown(0) TCGA-RP-A693-06 2 189923166 189923166 C T COL5A2 Missense_Mutation p.D740N 0.25 unknown(0) TCGA-RP-A693-06 2 192700856 192700856 C T SDPR Silent p.E357E 0.17 TCGA-RP-A693-06 2 197664364 197664364 G A GTF3C3 5'UTR 0.32 TCGA-RP-A693-06 2 204305455 204305455 G A RAPH1 Missense_Mutation p.P820S 0.25 possibly_damaging(0.857) TCGA-RP-A693-06 2 204305456 204305456 G A RAPH1 Silent p.F819F 0.24 TCGA-RP-A693-06 2 20818980 20818980 G A HS1BP3 Silent p.L316L 0.15 TCGA-RP-A693-06 2 20838224 20838224 C T HS1BP3 Missense_Mutation p.E199K 0.17 tolerated(0.13) possibly_damaging(0.543) TCGA-RP-A693-06 2 209007439 209007439 C T CRYGB Missense_Mutation p.E151K 0.30 deleterious(0.01) benign(0.297) TCGA-RP-A693-06 2 209103868 209103868 C T IDH1 Missense_Mutation p.E361K 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-RP-A693-06 2 212295722 212295722 A G ERBB4 Missense_Mutation p.L864P 0.34 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 2 212576880 212576880 C T ERBB4 Missense_Mutation p.G340E 0.25 tolerated(0.18) probably_damaging(0.944) TCGA-RP-A693-06 2 215852465 215852465 C A ABCA12 Missense_Mutation p.W1294C 0.42 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 2 218712963 218712963 G A TNS1 Silent p.V634V 0.24 TCGA-RP-A693-06 2 218938609 218938609 G A RUFY4 Missense_Mutation p.V201M 0.40 tolerated(0.09) benign(0.109) TCGA-RP-A693-06 2 219209735 219209735 C T PNKD 3'UTR 0.28 TCGA-RP-A693-06 2 219257709 219257709 C T SLC11A1 Silent p.F390F 0.17 TCGA-RP-A693-06 2 219294026 219294026 G A VIL1 Missense_Mutation p.E196K 0.23 deleterious(0.02) benign(0.102) TCGA-RP-A693-06 2 220337674 220337674 C T SPEG Silent p.L1335L 0.27 TCGA-RP-A693-06 2 229890662 229890662 G A PID1 Missense_Mutation p.H145Y 0.18 tolerated(0.48) probably_damaging(0.994) TCGA-RP-A693-06 2 230683171 230683171 A G TRIP12 Missense_Mutation p.L455P 0.10 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 2 234545246 234545246 G A UGT1A10 Silent p.G26G 0.20 TCGA-RP-A693-06 2 234627798 234627798 C T UGT1A4 Missense_Mutation p.S111F 0.20 tolerated(0.71) benign(0.001) TCGA-RP-A693-06 2 27503057 27503057 G A DNAJC5G Missense_Mutation p.E182K 0.21 tolerated(0.22) benign(0) TCGA-RP-A693-06 2 27804350 27804350 C G C2orf16 Missense_Mutation p.S1637R 0.18 tolerated(0.4) benign(0.062) TCGA-RP-A693-06 2 27804351 27804351 C T C2orf16 Missense_Mutation p.H1638Y 0.19 tolerated(0.33) benign(0.017) TCGA-RP-A693-06 2 33952676 33952676 G A AC009499.1 Intron 0.18 TCGA-RP-A693-06 2 38977332 38977332 G A SRSF7 Silent p.T11T 0.20 TCGA-RP-A693-06 2 43927479 43927479 C T PLEKHH2 Missense_Mutation p.P461L 0.29 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 2 44105055 44105055 C T ABCG8 3'UTR 0.20 TCGA-RP-A693-06 2 55253548 55253548 A T RTN4 Missense_Mutation p.L563M 0.27 tolerated(0.65) benign(0.059) TCGA-RP-A693-06 2 65561833 65561833 G A SPRED2 Silent p.V93V 0.18 TCGA-RP-A693-06 2 71361229 71361229 C T MPHOSPH10 Missense_Mutation p.S307L 0.26 tolerated(0.51) benign(0.017) TCGA-RP-A693-06 2 71650896 71650896 C T ZNF638 Missense_Mutation p.P1418S 0.27 tolerated(0.32) benign(0.001) TCGA-RP-A693-06 2 71650897 71650897 C T ZNF638 Missense_Mutation p.P1418L 0.28 tolerated(1) benign(0) TCGA-RP-A693-06 2 79255393 79255393 C T REG3G Silent p.F173F 0.20 TCGA-RP-A693-06 2 95952587 95952587 C T PROM2 Silent p.S692S 0.28 TCGA-RP-A693-06 2 97361640 97361640 A G FER1L5 Intron 0.14 TCGA-RP-A693-06 2 99938561 99938561 G A TXNDC9 Silent p.I140I 0.20 TCGA-RP-A693-06 3 113374558 113374558 G A KIAA2018 Missense_Mutation p.R1991C 0.28 probably_damaging(0.999) TCGA-RP-A693-06 3 113672684 113672684 C T ZDHHC23 Missense_Mutation p.P100L 0.22 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 3 119101163 119101163 C T ARHGAP31 Silent p.H152H 0.24 TCGA-RP-A693-06 3 119101164 119101164 C T ARHGAP31 Silent p.L153L 0.24 TCGA-RP-A693-06 3 120673784 120673784 C T STXBP5L Intron 0.11 TCGA-RP-A693-06 3 120941994 120941994 C T STXBP5L Silent p.P367P 0.14 TCGA-RP-A693-06 3 121137196 121137196 C T STXBP5L Missense_Mutation p.S1104L 0.13 deleterious(0.01) benign(0.029) TCGA-RP-A693-06 3 122411235 122411235 C T PARP14 Missense_Mutation p.S148F 0.07 deleterious(0) possibly_damaging(0.907) TCGA-RP-A693-06 3 122411236 122411236 C T PARP14 Silent p.S148S 0.08 TCGA-RP-A693-06 3 124483383 124483383 G A ITGB5 Missense_Mutation p.A720V 0.29 tolerated(0.31) benign(0.008) TCGA-RP-A693-06 3 130095627 130095627 C T COL6A5 Silent p.I205I 0.17 TCGA-RP-A693-06 3 134256013 134256013 C T CEP63 Missense_Mutation p.S153L 0.27 deleterious(0) probably_damaging(0.989) TCGA-RP-A693-06 3 137717732 137717732 G A CLDN18 Missense_Mutation p.G8S 0.20 tolerated(0.74) benign(0.001) TCGA-RP-A693-06 3 139180953 139180953 C T RBP2 Splice_Site p.X84_splice 0.25 TCGA-RP-A693-06 3 139180954 139180954 C T RBP2 Silent p.K84K 0.26 TCGA-RP-A693-06 3 140123537 140123537 C T CLSTN2 Missense_Mutation p.S189F 0.11 deleterious(0) probably_damaging(0.994) TCGA-RP-A693-06 3 14559340 14559340 G A GRIP2 RNA 0.31 TCGA-RP-A693-06 3 154858045 154858045 G A MME Silent p.Q307Q 0.27 TCGA-RP-A693-06 3 164730793 164730793 G A SI Missense_Mutation p.T1346I 0.17 deleterious(0) possibly_damaging(0.477) TCGA-RP-A693-06 3 169840473 169840473 G A PHC3 Silent p.V616V 0.30 TCGA-RP-A693-06 3 179137274 179137274 G A GNB4 Missense_Mutation p.S39F 0.16 tolerated(0.08) benign(0.035) TCGA-RP-A693-06 3 182947467 182947467 C T MCF2L2 Missense_Mutation p.E678K 0.16 deleterious(0.02) possibly_damaging(0.59) TCGA-RP-A693-06 3 183776271 183776271 C T HTR3C Missense_Mutation p.R206C 0.28 deleterious(0) possibly_damaging(0.846) TCGA-RP-A693-06 3 183818125 183818125 T C HTR3E 5'Flank 0.20 TCGA-RP-A693-06 3 18393642 18393642 C T SATB1 Missense_Mutation p.E541K 0.17 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 3 193049023 193049023 C T ATP13A5 Silent p.L450L 0.19 TCGA-RP-A693-06 3 197593054 197593054 C T LRCH3 Missense_Mutation p.L613F 0.23 tolerated(0.08) probably_damaging(1) TCGA-RP-A693-06 3 25656761 25656761 G A TOP2B Missense_Mutation p.L1171F 0.28 deleterious(0) probably_damaging(0.994) TCGA-RP-A693-06 3 31789438 31789438 G A OSBPL10 Nonsense_Mutation p.Q302* 0.19 TCGA-RP-A693-06 3 3182321 3182321 C T TRNT1 Missense_Mutation p.S157F 0.24 deleterious(0) probably_damaging(0.995) TCGA-RP-A693-06 3 38347743 38347743 C T SLC22A14 Missense_Mutation p.P76S 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-RP-A693-06 3 39306845 39306845 G A CX3CR1 3'UTR 0.20 TCGA-RP-A693-06 3 42742249 42742249 C T HHATL Missense_Mutation p.A24T 0.27 tolerated(0.16) benign(0.044) TCGA-RP-A693-06 3 42784515 42784515 C T CCDC13 Missense_Mutation p.R287Q 0.22 tolerated(0.51) benign(0.015) TCGA-RP-A693-06 3 44636173 44636173 C T ZNF660 Missense_Mutation p.S163F 0.21 deleterious(0) benign(0.022) TCGA-RP-A693-06 3 46939361 46939361 G A PTH1R Silent p.P110P 0.21 TCGA-RP-A693-06 3 46939362 46939362 G A PTH1R Missense_Mutation p.E111K 0.21 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 3 47462122 47462122 G A SCAP Silent p.F495F 0.15 TCGA-RP-A693-06 3 48454320 48454320 C T PLXNB1 Missense_Mutation p.G1562D 0.07 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 3 48605070 48605070 C T COL7A1 Splice_Site p.X2662_splice 0.28 TCGA-RP-A693-06 3 48624931 48624931 C T COL7A1 Missense_Mutation p.V972M 0.22 unknown(0) TCGA-RP-A693-06 3 48624932 48624932 C T COL7A1 Silent p.S971S 0.22 TCGA-RP-A693-06 3 49712680 49712680 C T APEH Silent p.F70F 0.17 TCGA-RP-A693-06 3 50009539 50009539 T A RBM6 Silent p.L457L 0.21 TCGA-RP-A693-06 3 50137503 50137503 C T RBM5 Intron 0.43 TCGA-RP-A693-06 3 50425041 50425041 C T CACNA2D2 Silent p.E156E 0.33 TCGA-RP-A693-06 3 50971419 50971419 G A DOCK3 Missense_Mutation p.E76K 0.25 deleterious(0) possibly_damaging(0.519) TCGA-RP-A693-06 3 51196695 51196695 G A DOCK3 Missense_Mutation p.M283I 0.10 deleterious(0.01) benign(0.013) TCGA-RP-A693-06 3 51979163 51979163 C T PARP3 Missense_Mutation p.P269S 0.16 deleterious(0) probably_damaging(0.994) TCGA-RP-A693-06 3 52442570 52442570 G A BAP1 Missense_Mutation p.R59W 0.29 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 3 52442571 52442571 G A BAP1 Silent p.S58S 0.21 TCGA-RP-A693-06 3 54919329 54919329 C T CACNA2D3 Missense_Mutation p.P645L 0.23 deleterious(0) possibly_damaging(0.827) TCGA-RP-A693-06 3 55768834 55768834 C T ERC2 Missense_Mutation p.E893K 0.19 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 3 88040371 88040371 C T HTR1F Missense_Mutation p.P158S 0.29 deleterious(0.01) probably_damaging(1) TCGA-RP-A693-06 3 9055469 9055469 G A SRGAP3 Missense_Mutation p.P624L 0.25 deleterious(0.02) benign(0.406) TCGA-RP-A693-06 3 96706553 96706553 G A EPHA6 Missense_Mutation p.G277E 0.18 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 3 97663960 97663960 G A MINA 3'UTR 0.33 TCGA-RP-A693-06 4 100201320 100201320 C T ADH1A Nonsense_Mutation p.W315* 0.18 TCGA-RP-A693-06 4 104510830 104510830 G A TACR3 3'UTR 0.20 TCGA-RP-A693-06 4 110662171 110662171 C A CFI Missense_Mutation p.V544L 0.23 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 4 110932671 110932671 C T EGF 3'UTR 0.33 TCGA-RP-A693-06 4 115997400 115997400 C T NDST4 Missense_Mutation p.G265R 0.26 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 4 119948504 119948504 C T SYNPO2 Missense_Mutation p.A327V 0.07 deleterious(0.01) probably_damaging(0.931) TCGA-RP-A693-06 4 120219886 120219886 A T C4orf3 3'UTR 0.12 TCGA-RP-A693-06 4 13615286 13615286 C T BOD1L1 Splice_Site p.X392_splice 0.41 TCGA-RP-A693-06 4 141315153 141315153 C T CLGN Missense_Mutation p.E398K 0.24 deleterious(0.03) benign(0.215) TCGA-RP-A693-06 4 146823931 146823931 G A ZNF827 Silent p.S160S 0.18 TCGA-RP-A693-06 4 154542962 154542962 G A KIAA0922 Missense_Mutation p.E1274K 0.31 tolerated(0.9) benign(0.002) TCGA-RP-A693-06 4 155526015 155526015 C T FGG Missense_Mutation p.D445N 0.15 deleterious_low_confidence(0.01) benign(0.025) TCGA-RP-A693-06 4 158254006 158254006 G A GRIA2 Silent p.V306V 0.25 TCGA-RP-A693-06 4 166218843 166218843 G A KLHL2 Missense_Mutation p.R250Q 0.28 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 4 166929186 166929186 G C TLL1 Missense_Mutation p.R301S 0.10 deleterious(0) possibly_damaging(0.835) TCGA-RP-A693-06 4 173730589 173730589 G A GALNTL6 Missense_Mutation p.G211R 0.31 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 4 175225444 175225444 C T CEP44 Missense_Mutation p.P144L 0.17 tolerated(0.06) benign(0.066) TCGA-RP-A693-06 4 175225445 175225445 T C CEP44 Silent p.P144P 0.19 TCGA-RP-A693-06 4 185552963 185552963 G A CASP3 Missense_Mutation p.R147C 0.18 tolerated(0.24) benign(0.002) TCGA-RP-A693-06 4 185694280 185694280 G A ACSL1 Silent p.H290H 0.26 TCGA-RP-A693-06 4 186111752 186111752 G A KIAA1430 Missense_Mutation p.S200L 0.35 tolerated(0.08) possibly_damaging(0.56) TCGA-RP-A693-06 4 186272751 186272751 C T SNX25 Silent p.F654F 0.22 TCGA-RP-A693-06 4 25669513 25669513 C T SLC34A2 Missense_Mutation p.R179W 0.16 deleterious(0) possibly_damaging(0.846) TCGA-RP-A693-06 4 38830500 38830500 G A TLR6 Missense_Mutation p.L199F 0.17 deleterious(0.01) possibly_damaging(0.623) TCGA-RP-A693-06 4 38830501 38830501 G A TLR6 Silent p.T198T 0.17 TCGA-RP-A693-06 4 38972719 38972719 C T TMEM156 Missense_Mutation p.E288K 0.21 tolerated(0.59) benign(0.006) TCGA-RP-A693-06 4 41748139 41748139 C T PHOX2B Silent p.A210A 0.20 TCGA-RP-A693-06 4 42122227 42122227 C A BEND4 Missense_Mutation p.G411W 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RP-A693-06 4 46053572 46053572 C T GABRG1 Missense_Mutation p.D334N 0.26 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 4 47427948 47427948 G A GABRB1 Silent p.V446V 0.24 TCGA-RP-A693-06 4 47605499 47605499 C T CORIN Silent p.R909R 0.28 TCGA-RP-A693-06 4 48037036 48037036 G A NIPAL1 Missense_Mutation p.M200I 0.17 tolerated(0.07) possibly_damaging(0.519) TCGA-RP-A693-06 4 48143377 48143377 C T TEC Missense_Mutation p.M510I 0.21 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 4 53379 53379 G A ZNF595 5'UTR 0.03 TCGA-RP-A693-06 4 55565910 55565910 C T KIT Missense_Mutation p.T245M 0.26 tolerated(0.14) benign(0) TCGA-RP-A693-06 4 57871874 57871874 C T POLR2B Silent p.F402F 0.26 TCGA-RP-A693-06 4 5810031 5810031 G A EVC Missense_Mutation p.A889T 0.14 tolerated(0.77) benign(0.032) TCGA-RP-A693-06 4 6325019 6325019 C T PPP2R2C 3'UTR 0.26 TCGA-RP-A693-06 4 68566880 68566880 G A UBA6 5'UTR 0.33 TCGA-RP-A693-06 4 69434044 69434044 C T UGT2B17 Silent p.V53V 0.43 TCGA-RP-A693-06 4 69682287 69682287 G A UGT2B10 Missense_Mutation p.G184R 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-RP-A693-06 4 69796267 69796267 G A UGT2A3 Missense_Mutation p.S434F 0.18 deleterious(0.03) possibly_damaging(0.702) TCGA-RP-A693-06 4 70455305 70455305 G A UGT2A1 Nonsense_Mutation p.R623* 0.21 TCGA-RP-A693-06 4 71500219 71500219 A C ENAM Missense_Mutation p.Q135H 0.20 tolerated(0.11) benign(0.443) TCGA-RP-A693-06 4 74279175 74279175 G A ALB Silent p.S294S 0.35 TCGA-RP-A693-06 4 75040305 75040305 T A MTHFD2L Missense_Mutation p.S76T 0.26 tolerated(0.12) benign(0.026) TCGA-RP-A693-06 4 76573850 76573850 C A G3BP2 Missense_Mutation p.G301C 0.22 deleterious(0.05) possibly_damaging(0.76) TCGA-RP-A693-06 4 77317424 77317424 C T CCDC158 Missense_Mutation p.E96K 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-RP-A693-06 4 81967420 81967420 C T BMP3 Missense_Mutation p.S282F 0.21 deleterious(0) possibly_damaging(0.62) TCGA-RP-A693-06 4 8228877 8228877 T G SH3TC1 Missense_Mutation p.C486G 0.14 tolerated(0.34) benign(0.006) TCGA-RP-A693-06 4 84367239 84367239 A G HELQ Silent p.L465L 0.30 TCGA-RP-A693-06 4 88226426 88226426 G A HSD17B13 Missense_Mutation p.R283C 0.26 deleterious(0.05) benign(0.015) TCGA-RP-A693-06 4 89618588 89618588 T C NAP1L5 Silent p.E106E 0.27 TCGA-RP-A693-06 4 99358187 99358187 C T RAP1GDS1 Missense_Mutation p.S556F 0.25 deleterious(0) probably_damaging(0.983) TCGA-RP-A693-06 5 102894633 102894633 T A NUDT12 Missense_Mutation p.Y248F 0.21 tolerated(0.44) benign(0.261) TCGA-RP-A693-06 5 129520121 129520121 C T CHSY3 Missense_Mutation p.A429V 0.20 tolerated(0.79) benign(0.006) TCGA-RP-A693-06 5 139189295 139189295 G A PSD2 Silent p.L90L 0.27 TCGA-RP-A693-06 5 139906029 139906029 G A ANKHD1 Splice_Site p.X1647_splice 0.20 TCGA-RP-A693-06 5 140208808 140208808 G A PCDHA6 Missense_Mutation p.D378N 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-RP-A693-06 5 140249047 140249047 A T PCDHA11 Missense_Mutation p.N120I 0.27 deleterious_low_confidence(0) benign(0.01) TCGA-RP-A693-06 5 140249048 140249048 C T PCDHA11 Silent p.N120N 0.27 TCGA-RP-A693-06 5 140531822 140531822 G A PCDHB6 Missense_Mutation p.D662N 0.21 deleterious_low_confidence(0.01) benign(0.354) TCGA-RP-A693-06 5 140558774 140558774 C T PCDHB8 Nonsense_Mutation p.Q387* 0.22 TCGA-RP-A693-06 5 140572237 140572237 G A PCDHB10 Missense_Mutation p.E38K 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-RP-A693-06 5 140953277 140953277 G A DIAPH1 Missense_Mutation p.P714S 0.36 unknown(0) TCGA-RP-A693-06 5 14508573 14508573 C T TRIO 3'UTR 0.29 TCGA-RP-A693-06 5 145616925 145616925 C T RBM27 Silent p.P403P 0.33 TCGA-RP-A693-06 5 147024426 147024426 T G JAKMIP2 Missense_Mutation p.E357A 0.20 deleterious(0) probably_damaging(0.969) TCGA-RP-A693-06 5 14756009 14756009 G A ANKH Silent p.F159F 0.18 TCGA-RP-A693-06 5 148679089 148679089 C T AFAP1L1 Missense_Mutation p.P12S 0.22 tolerated(0.95) probably_damaging(0.996) TCGA-RP-A693-06 5 149584095 149584095 G A SLC6A7 Missense_Mutation p.G445R 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-RP-A693-06 5 150924486 150924486 G A FAT2 Missense_Mutation p.P2068S 0.24 probably_damaging(1) TCGA-RP-A693-06 5 153855435 153855435 T A HAND1 Silent p.P193P 0.23 TCGA-RP-A693-06 5 167643793 167643793 G A TENM2 Missense_Mutation p.G1367R 0.27 deleterious(0.04) possibly_damaging(0.728) TCGA-RP-A693-06 5 169812471 169812471 C T KCNMB1 5'UTR 0.30 TCGA-RP-A693-06 5 171471923 171471923 G A STK10 Missense_Mutation p.A957V 0.14 deleterious_low_confidence(0.01) benign(0.02) TCGA-RP-A693-06 5 172750362 172750362 G A STC2 Silent p.S122S 0.13 TCGA-RP-A693-06 5 176026119 176026119 T C GPRIN1 Silent p.R239R 0.22 TCGA-RP-A693-06 5 178392081 178392081 C T ZNF454 Missense_Mutation p.H226Y 0.26 tolerated(0.08) possibly_damaging(0.656) TCGA-RP-A693-06 5 179192384 179192384 G A MAML1 Missense_Mutation p.D125N 0.20 deleterious(0.02) benign(0.027) TCGA-RP-A693-06 5 179192799 179192799 C T MAML1 Missense_Mutation p.P263L 0.27 deleterious(0) probably_damaging(0.99) TCGA-RP-A693-06 5 180166454 180166454 C T OR2Y1 Missense_Mutation p.R202Q 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-RP-A693-06 5 19571761 19571761 C T CDH18 Missense_Mutation p.E394K 0.22 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 5 32406923 32406923 T C ZFR Missense_Mutation p.I330V 0.23 tolerated(0.09) unknown(0) TCGA-RP-A693-06 5 33938002 33938002 C A RXFP3 Missense_Mutation p.P386H 0.14 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 5 35773992 35773992 C T SPEF2 Intron 0.26 TCGA-RP-A693-06 5 35910588 35910588 C T CAPSL Missense_Mutation p.M65I 0.21 tolerated(0.23) benign(0) TCGA-RP-A693-06 5 35954268 35954268 G A UGT3A1 3'UTR 0.22 TCGA-RP-A693-06 5 3600281 3600281 C T IRX1 Missense_Mutation p.P407S 0.21 tolerated(0.62) benign(0.002) TCGA-RP-A693-06 5 5262892 5262892 C T ADAMTS16 Missense_Mutation p.P929S 0.28 deleterious(0.05) benign(0.022) TCGA-RP-A693-06 5 5262893 5262893 C T ADAMTS16 Missense_Mutation p.P929L 0.28 deleterious(0) benign(0.258) TCGA-RP-A693-06 5 66478837 66478837 A T CD180 Missense_Mutation p.S612T 0.22 tolerated(0.39) benign(0) TCGA-RP-A693-06 5 68504116 68504116 G A CENPH Missense_Mutation p.R194K 0.28 tolerated(1) benign(0.001) TCGA-RP-A693-06 5 68665386 68665386 G A TAF9 Intron 0.38 TCGA-RP-A693-06 5 71015042 71015042 C T CARTPT 5'UTR 0.30 TCGA-RP-A693-06 5 71491413 71491415 CTC - MAP1B In_Frame_Del p.P745del 0.22 TCGA-RP-A693-06 5 75597230 75597230 G A SV2C Silent p.S620S 0.20 TCGA-RP-A693-06 5 75597231 75597231 G A SV2C Missense_Mutation p.G621R 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-RP-A693-06 5 80547042 80547042 C T CKMT2 Silent p.L31L 0.19 TCGA-RP-A693-06 5 82815972 82815972 G A VCAN Missense_Mutation p.G616E 0.20 tolerated(0.66) benign(0.004) TCGA-RP-A693-06 5 82833265 82833265 G A VCAN Nonsense_Mutation p.W1481* 0.21 TCGA-RP-A693-06 5 889761 889761 G A BRD9 Silent p.A134A 0.16 TCGA-RP-A693-06 5 89979887 89979887 G A GPR98 Missense_Mutation p.G2050E 0.26 benign(0.067) TCGA-RP-A693-06 5 96124332 96124332 C T ERAP1 Silent p.Q527Q 0.27 TCGA-RP-A693-06 5 96215914 96215914 C T ERAP2 Silent p.G175G 0.25 TCGA-RP-A693-06 6 110714419 110714419 C T DDO Silent p.K223K 0.37 TCGA-RP-A693-06 6 112671701 112671701 G A RFPL4B Silent p.%3D 0.39 TCGA-RP-A693-06 6 117116893 117116893 G A GPRC6A Missense_Mutation p.H552Y 0.36 tolerated(0.46) benign(0.006) TCGA-RP-A693-06 6 136596793 136596793 G A BCLAF1 Missense_Mutation p.H577Y 0.10 deleterious(0) benign(0.291) TCGA-RP-A693-06 6 136709570 136709570 C T MAP7 Missense_Mutation p.G185R 0.29 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 6 138632579 138632579 C T KIAA1244 Missense_Mutation p.P1378S 0.28 tolerated(0.7) benign(0.007) TCGA-RP-A693-06 6 1394941 1394941 C T FOXF2 Silent p.P394P 0.34 TCGA-RP-A693-06 6 144086793 144086793 C T PHACTR2 Missense_Mutation p.P364S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-RP-A693-06 6 146127256 146127256 G A FBXO30 Nonsense_Mutation p.R96* 0.38 TCGA-RP-A693-06 6 149721676 149721676 C T SUMO4 Missense_Mutation p.P50L 0.26 deleterious(0.01) benign(0.001) TCGA-RP-A693-06 6 152652693 152652693 G A SYNE1 Missense_Mutation p.P4376L 0.19 probably_damaging(0.982) TCGA-RP-A693-06 6 154735476 154735476 C T CNKSR3 Missense_Mutation p.D343N 0.43 deleterious(0.01) benign(0.253) TCGA-RP-A693-06 6 15627591 15627591 G A DTNBP1 Missense_Mutation p.S113F 0.27 deleterious(0) possibly_damaging(0.682) TCGA-RP-A693-06 6 158505192 158505192 A G SYNJ2 Missense_Mutation p.H1065R 0.22 tolerated_low_confidence(0.43) benign(0.001) TCGA-RP-A693-06 6 16326976 16326976 G A ATXN1 Silent p.F522F 0.21 TCGA-RP-A693-06 6 165832185 165832185 G A PDE10A Silent p.D312D 0.39 TCGA-RP-A693-06 6 17764938 17764938 G A KIF13A Silent p.A1607A 0.29 TCGA-RP-A693-06 6 20649538 20649538 G T CDKAL1 Missense_Mutation p.A101S 0.20 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 6 28554131 28554131 C T SCAND3 Missense_Mutation p.E122K 0.18 deleterious_low_confidence(0) benign(0.288) TCGA-RP-A693-06 6 28829564 28829564 C T XXbac-BPG308K3.6 RNA 0.44 TCGA-RP-A693-06 6 30892226 30892226 C T VARS2 Silent p.A884A 0.26 TCGA-RP-A693-06 6 3105746 3105746 C T RIPK1 Missense_Mutation p.S346F 0.22 deleterious(0) probably_damaging(0.994) TCGA-RP-A693-06 6 31431861 31431861 C T HCP5 RNA 0.21 TCGA-RP-A693-06 6 31748802 31748802 G A VARS Silent p.S881S 0.22 TCGA-RP-A693-06 6 32085698 32085698 G A ATF6B Silent p.L454L 0.25 TCGA-RP-A693-06 6 35923258 35923258 C T SLC26A8 Missense_Mutation p.E635K 0.21 tolerated(0.24) benign(0.001) TCGA-RP-A693-06 6 36353427 36353427 G A ETV7 Missense_Mutation p.S9F 0.14 deleterious(0.02) benign(0.111) TCGA-RP-A693-06 6 36839658 36839658 G A PPIL1 Intron 0.18 TCGA-RP-A693-06 6 39867948 39867948 C T DAAM2 Silent p.S925S 0.27 TCGA-RP-A693-06 6 41196702 41196702 G A TREML4 Missense_Mutation p.G105E 0.19 deleterious(0) probably_damaging(0.996) TCGA-RP-A693-06 6 43226991 43226991 G A TTBK1 Missense_Mutation p.R411Q 0.06 possibly_damaging(0.871) TCGA-RP-A693-06 6 44218815 44218815 A T HSP90AB1 Missense_Mutation p.R330W 0.16 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 6 46107841 46107841 C T ENPP4 Missense_Mutation p.S174L 0.22 deleterious(0.02) benign(0.157) TCGA-RP-A693-06 6 47682870 47682870 C T GPR115 Missense_Mutation p.S630F 0.30 deleterious(0.02) benign(0.056) TCGA-RP-A693-06 6 47682871 47682871 C T GPR115 Silent p.S630S 0.30 TCGA-RP-A693-06 6 49754449 49754449 C T PGK2 Missense_Mutation p.R151Q 0.23 tolerated(0.11) benign(0.086) TCGA-RP-A693-06 6 55216331 55216331 C T GFRAL Silent p.P217P 0.20 TCGA-RP-A693-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.19 deleterious(0) probably_damaging(0.992) TCGA-RP-A693-06 6 57015752 57015752 G A ZNF451 Intron 0.20 TCGA-RP-A693-06 6 84371263 84371263 G A SNAP91 Missense_Mutation p.S137F 0.21 deleterious(0) unknown(0) TCGA-RP-A693-06 6 84862691 84862691 C A KIAA1009 Missense_Mutation p.D1068Y 0.41 deleterious(0) probably_damaging(0.957) TCGA-RP-A693-06 6 84862745 84862745 C G KIAA1009 Missense_Mutation p.D1050H 0.50 tolerated(0.08) possibly_damaging(0.853) TCGA-RP-A693-06 6 84862765 84862765 C G KIAA1009 Missense_Mutation p.R1043T 0.41 deleterious(0.03) possibly_damaging(0.56) TCGA-RP-A693-06 6 87725701 87725701 G A HTR1E Missense_Mutation p.G217R 0.27 tolerated(0.53) benign(0.225) TCGA-RP-A693-06 6 87968876 87968876 C T ZNF292 Silent p.G1843G 0.24 TCGA-RP-A693-06 6 88123561 88123561 C T C6ORF165 Missense_Mutation p.P76S 0.26 tolerated(0.05) possibly_damaging(0.608) TCGA-RP-A693-06 6 93982021 93982021 C T EPHA7 Missense_Mutation p.E482K 0.32 tolerated(0.09) probably_damaging(0.998) TCGA-RP-A693-06 7 100184221 100184221 C T FBXO24 5'Flank 0.22 TCGA-RP-A693-06 7 100245141 100245141 C T ACTL6B Missense_Mutation p.G229S 0.19 tolerated(0.16) benign(0.213) TCGA-RP-A693-06 7 101259565 101259565 C T MYL10 Silent p.E156E 0.23 TCGA-RP-A693-06 7 101821823 101821823 G A CUX1 Silent p.Q312Q 0.31 TCGA-RP-A693-06 7 102667980 102667980 G A FBXL13 Silent p.I81I 0.17 TCGA-RP-A693-06 7 102948132 102948132 C T PMPCB Missense_Mutation p.P276S 0.32 tolerated(0.06) benign(0.057) TCGA-RP-A693-06 7 103363592 103363592 G A RELN Missense_Mutation p.S267F 0.24 tolerated(0.25) benign(0.216) TCGA-RP-A693-06 7 105671242 105671242 C T CDHR3 Missense_Mutation p.T770I 0.19 tolerated(0.33) benign(0.01) TCGA-RP-A693-06 7 108524201 108524201 G A C7orf66 Missense_Mutation p.R71C 0.24 tolerated_low_confidence(0.13) benign(0.038) TCGA-RP-A693-06 7 113519160 113519160 C T PPP1R3A Missense_Mutation p.G663R 0.20 tolerated(0.42) benign(0.009) TCGA-RP-A693-06 7 120780940 120780940 C T CPED1 Missense_Mutation p.P587S 0.23 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 7 129103951 129103951 A C STRIP2 Missense_Mutation p.I540L 0.15 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 7 131128387 131128387 C T MKLN1 Missense_Mutation p.L441F 0.29 deleterious(0.01) probably_damaging(0.924) TCGA-RP-A693-06 7 135376073 135376073 C T SLC13A4 Missense_Mutation p.G440E 0.21 tolerated(0.7) benign(0.098) TCGA-RP-A693-06 7 135376074 135376074 C T SLC13A4 Splice_Site p.X440_splice 0.21 TCGA-RP-A693-06 7 141736065 141736065 C T MGAM Missense_Mutation p.H686Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 7 141736629 141736629 G A MGAM Missense_Mutation p.D695N 0.27 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 7 143086960 143086960 C T ZYX Missense_Mutation p.P502S 0.17 deleterious(0) probably_damaging(0.947) TCGA-RP-A693-06 7 143771432 143771432 G A OR2A25 Silent p.G40G 0.22 TCGA-RP-A693-06 7 14620489 14620489 C T DGKB Missense_Mutation p.G537E 0.08 deleterious(0) probably_damaging(0.997) TCGA-RP-A693-06 7 149152686 149152686 G A ZNF777 Missense_Mutation p.S143F 0.22 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-RP-A693-06 7 149153029 149153029 G A ZNF777 Nonsense_Mutation p.R29* 0.21 TCGA-RP-A693-06 7 150325191 150325191 C T GIMAP6 Silent p.K165K 0.18 TCGA-RP-A693-06 7 150325545 150325545 C T GIMAP6 Silent p.G47G 0.24 TCGA-RP-A693-06 7 156743169 156743169 C T NOM1 Silent p.L246L 0.17 TCGA-RP-A693-06 7 17861179 17861179 G A SNX13 Missense_Mutation p.R600C 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 7 19738074 19738074 G A TWISTNB Silent p.F294F 0.24 TCGA-RP-A693-06 7 20198534 20198534 C T MACC1 Missense_Mutation p.D484N 0.34 tolerated(0.5) benign(0.055) TCGA-RP-A693-06 7 21646062 21646062 G A DNAH11 Missense_Mutation p.E1223K 0.27 benign(0.007) TCGA-RP-A693-06 7 2698040 2698040 C T TTYH3 Silent p.T457T 0.17 TCGA-RP-A693-06 7 27204714 27204714 G A HOXA9 Silent p.F121F 0.14 TCGA-RP-A693-06 7 30491985 30491985 G A NOD1 Missense_Mutation p.R350W 0.24 deleterious(0) probably_damaging(0.961) TCGA-RP-A693-06 7 30491986 30491986 G A NOD1 Silent p.L349L 0.28 TCGA-RP-A693-06 7 36278627 36278627 C T EEPD1 Silent p.D304D 0.19 TCGA-RP-A693-06 7 43436461 43436461 C T HECW1 Missense_Mutation p.R202W 0.22 deleterious(0) probably_damaging(0.987) TCGA-RP-A693-06 7 44578781 44578781 G A NPC1L1 Silent p.F405F 0.21 TCGA-RP-A693-06 7 48284285 48284285 T A ABCA13 Missense_Mutation p.L459I 0.25 probably_damaging(0.999) TCGA-RP-A693-06 7 5104783 5104783 C T RBAK Missense_Mutation p.P566S 0.29 tolerated(0.05) probably_damaging(0.988) TCGA-RP-A693-06 7 51096953 51096953 C T COBL Missense_Mutation p.A614T 0.21 tolerated(0.31) benign(0.026) TCGA-RP-A693-06 7 5521312 5521312 C T FBXL18 3'UTR 0.22 TCGA-RP-A693-06 7 5521313 5521313 C T FBXL18 3'UTR 0.23 TCGA-RP-A693-06 7 57188800 57188800 G A ZNF479 Nonsense_Mutation p.Q108* 0.22 TCGA-RP-A693-06 7 73100984 73100984 C T WBSCR22 Silent p.I35I 0.23 TCGA-RP-A693-06 7 73456957 73456957 C T ELN Silent p.F82F 0.31 TCGA-RP-A693-06 7 73521427 73521427 C T LIMK1 Silent p.S323S 0.33 TCGA-RP-A693-06 7 75695626 75695626 C T MDH2 Silent p.I305I 0.18 TCGA-RP-A693-06 7 76903071 76903071 G A CCDC146 Missense_Mutation p.E412K 0.14 deleterious(0) probably_damaging(0.994) TCGA-RP-A693-06 7 82455909 82455909 C T PCLO Missense_Mutation p.G4804E 0.19 unknown(0) TCGA-RP-A693-06 7 82455910 82455910 C A PCLO Missense_Mutation p.G4804W 0.20 unknown(0) TCGA-RP-A693-06 7 92151512 92151512 G A PEX1 Silent p.S59S 0.30 TCGA-RP-A693-06 7 92161850 92161850 T C RBM48 Silent p.T145T 0.18 TCGA-RP-A693-06 7 92826841 92826841 G A HEPACAM2 Silent p.S365S 0.34 TCGA-RP-A693-06 7 97862208 97862208 G A TECPR1 Silent p.F583F 0.42 TCGA-RP-A693-06 7 98445625 98445625 A G TMEM130 3'UTR 0.20 TCGA-RP-A693-06 7 99123974 99123974 G A ZKSCAN5 Silent p.K437K 0.26 TCGA-RP-A693-06 8 10555430 10555430 C A C8orf74 Missense_Mutation p.A188E 0.14 tolerated(0.05) benign(0.086) TCGA-RP-A693-06 8 113237052 113237052 C T CSMD3 Missense_Mutation p.G3691E 0.40 tolerated(0.08) possibly_damaging(0.715) TCGA-RP-A693-06 8 113564878 113564878 C T CSMD3 Missense_Mutation p.D1436N 0.21 deleterious(0) benign(0.04) TCGA-RP-A693-06 8 120744192 120744192 G A TAF2 Missense_Mutation p.S1191F 0.46 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-RP-A693-06 8 132051787 132051787 C T ADCY8 Missense_Mutation p.G265R 0.14 deleterious(0) probably_damaging(0.949) TCGA-RP-A693-06 8 133008661 133008661 C T EFR3A Nonsense_Mutation p.R692* 0.13 TCGA-RP-A693-06 8 133036948 133036948 G A OC90 Missense_Mutation p.S405F 0.23 tolerated(1) benign(0.006) TCGA-RP-A693-06 8 13357361 13357361 G A DLC1 Missense_Mutation p.P74S 0.18 tolerated_low_confidence(0.12) benign(0.027) TCGA-RP-A693-06 8 134478222 134478222 G C ST3GAL1 Missense_Mutation p.R140G 0.33 probably_damaging(0.995) TCGA-RP-A693-06 8 141468629 141468629 T A TRAPPC9 Missense_Mutation p.H12L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-RP-A693-06 8 143958199 143958199 G A CYP11B1 Missense_Mutation p.S233F 0.22 deleterious(0) probably_damaging(0.991) TCGA-RP-A693-06 8 144940758 144940758 C T EPPK1 Missense_Mutation p.G2222S 0.13 probably_damaging(1) TCGA-RP-A693-06 8 144943077 144943077 C T EPPK1 Missense_Mutation p.A1449T 0.38 benign(0.382) TCGA-RP-A693-06 8 144943078 144943078 C T EPPK1 Silent p.V1448V 0.37 TCGA-RP-A693-06 8 144993600 144993600 G A PLEC Silent p.R3600R 0.34 TCGA-RP-A693-06 8 145107471 145107471 G A OPLAH Missense_Mutation p.P1062S 0.19 deleterious(0) probably_damaging(0.941) TCGA-RP-A693-06 8 145638194 145638194 C T SLC39A4 Nonsense_Mutation p.W588* 0.34 TCGA-RP-A693-06 8 20003224 20003224 G A SLC18A1 3'UTR 0.30 TCGA-RP-A693-06 8 21996206 21996206 G A REEP4 Silent p.P218P 0.12 TCGA-RP-A693-06 8 22548479 22548479 G C EGR3 Missense_Mutation p.P224R 0.17 deleterious(0) probably_damaging(0.999) TCGA-RP-A693-06 8 24251629 24251629 G A ADAMDEC1 Missense_Mutation p.G111E 0.17 deleterious(0.02) possibly_damaging(0.71) TCGA-RP-A693-06 8 24304759 24304759 C T ADAM7 Missense_Mutation p.H73Y 0.11 tolerated(0.57) probably_damaging(0.966) TCGA-RP-A693-06 8 27457501 27457501 C T CLU Silent p.Q320Q 0.10 TCGA-RP-A693-06 8 27927145 27927145 C T NUGGC Missense_Mutation p.R58K 0.16 tolerated(0.26) possibly_damaging(0.493) TCGA-RP-A693-06 8 30700060 30700060 G A TEX15 Silent p.L2158L 0.36 TCGA-RP-A693-06 8 30889975 30889975 G A PURG Silent p.S108S 0.15 TCGA-RP-A693-06 8 38700891 38700891 C T TACC1 Missense_Mutation p.H736Y 0.40 deleterious(0) probably_damaging(0.956) TCGA-RP-A693-06 8 38874842 38874842 C T ADAM9 Missense_Mutation p.P172L 0.34 deleterious(0) possibly_damaging(0.885) TCGA-RP-A693-06 8 39068779 39068779 C T ADAM32 Missense_Mutation p.P390L 0.50 tolerated(0.13) benign(0.007) TCGA-RP-A693-06 8 39847324 39847324 C T IDO2 Nonsense_Mutation p.Q225* 0.19 TCGA-RP-A693-06 8 41456766 41456766 T A AGPAT6 Missense_Mutation p.F36L 0.31 tolerated(0.25) benign(0.003) TCGA-RP-A693-06 8 41845064 41845064 G A KAT6A Silent p.I206I 0.37 TCGA-RP-A693-06 8 53084982 53084982 C T ST18 Missense_Mutation p.E147K 0.34 deleterious(0.01) benign(0.19) TCGA-RP-A693-06 8 62212525 62212525 G A CLVS1 Missense_Mutation p.D47N 0.19 deleterious(0) possibly_damaging(0.825) TCGA-RP-A693-06 8 67372671 67372671 C T ADHFE1 Missense_Mutation p.P431S 0.18 tolerated(0.05) possibly_damaging(0.596) TCGA-RP-A693-06 8 72211931 72211931 C T EYA1 Missense_Mutation p.G194E 0.17 deleterious(0) probably_damaging(0.986) TCGA-RP-A693-06 8 72267028 72267028 T C EYA1 Missense_Mutation p.N38S 0.41 tolerated(0.09) probably_damaging(0.994) TCGA-RP-A693-06 8 76476339 76476355 TTTACTTCAGAACGGCA - HNF4G 3'UTR 0.18 TCGA-RP-A693-06 8 87541219 87541219 C T CPNE3 Missense_Mutation p.S60F 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-RP-A693-06 8 87755799 87755799 C T CNGB3 Silent p.E19E 0.42 TCGA-RP-A693-06 8 94811923 94811923 T - TMEM67 Frame_Shift_Del p.Y727Ifs*5 0.19 TCGA-RP-A693-06 8 95556114 95556114 G T KIAA1429 Silent p.V40V 0.19 TCGA-RP-A693-06 9 100076681 100076681 G A CCDC180 Missense_Mutation p.E200K 0.30 deleterious(0) probably_damaging(0.998) TCGA-RP-A693-06 9 103108553 103108553 G A TEX10 Missense_Mutation p.S313F 0.09 deleterious(0) probably_damaging(0.98) TCGA-RP-A693-06 9 104125033 104125033 G A BAAT Missense_Mutation p.P312S 0.11 deleterious(0.02) possibly_damaging(0.901) TCGA-RP-A693-06 9 104125279 104125279 C T BAAT Missense_Mutation p.G230R 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 9 111631345 111631345 G A IKBKAP 3'UTR 0.25 TCGA-RP-A693-06 9 113170734 113170734 G A SVEP1 Silent p.T2382T 0.19 TCGA-RP-A693-06 9 114156562 114156562 G A KIAA0368 Missense_Mutation p.P1112S 0.16 tolerated(0.55) benign(0.008) TCGA-RP-A693-06 9 114994483 114994483 G A PTBP3 Missense_Mutation p.P340S 0.29 tolerated(0.37) benign(0.044) TCGA-RP-A693-06 9 115931684 115931684 G A FKBP15 Missense_Mutation p.P1102L 0.10 tolerated_low_confidence(0.08) benign(0.011) TCGA-RP-A693-06 9 116276919 116276919 C T RGS3 Silent p.F553F 0.16 TCGA-RP-A693-06 9 116812196 116812196 A G ZNF618 Missense_Mutation p.N779D 0.12 tolerated(0.49) benign(0.02) TCGA-RP-A693-06 9 117840333 117840333 C T TNC Missense_Mutation p.E855K 0.38 deleterious(0) possibly_damaging(0.544) TCGA-RP-A693-06 9 123768288 123768288 A T C5 Missense_Mutation p.F824Y 0.22 tolerated(0.17) probably_damaging(0.969) TCGA-RP-A693-06 9 130912725 130912725 G A LCN2 Intron 0.07 TCGA-RP-A693-06 9 133914439 133914439 G A LAMC3 Missense_Mutation p.G389S 0.15 deleterious(0) probably_damaging(0.992) TCGA-RP-A693-06 9 136528931 136528931 C T SARDH 3'UTR 0.22 TCGA-RP-A693-06 9 136595217 136595217 G A SARDH Silent p.S261S 0.10 TCGA-RP-A693-06 9 139350554 139350554 G A SEC16A Missense_Mutation p.A1872V 0.29 tolerated(0.93) benign(0.003) TCGA-RP-A693-06 9 139369519 139369519 G A SEC16A Missense_Mutation p.S850L 0.17 tolerated(0.24) benign(0.003) TCGA-RP-A693-06 9 139616796 139616796 C T FAM69B Intron 0.21 TCGA-RP-A693-06 9 139749471 139749471 G A MAMDC4 Missense_Mutation p.R369Q 0.13 tolerated(1) benign(0) TCGA-RP-A693-06 9 139749472 139749472 G A MAMDC4 Silent p.R369R 0.13 TCGA-RP-A693-06 9 139874416 139874416 C T PTGDS Missense_Mutation p.S117F 0.26 deleterious(0.01) possibly_damaging(0.768) TCGA-RP-A693-06 9 139887630 139887630 C T C9orf142 Missense_Mutation p.P119L 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-RP-A693-06 9 139887631 139887631 C T C9orf142 Silent p.P119P 0.14 TCGA-RP-A693-06 9 140161696 140161696 C T NELFB Silent p.L415L 0.28 TCGA-RP-A693-06 9 141008926 141008926 C T CACNA1B Missense_Mutation p.P1878L 0.36 deleterious(0.02) benign(0.348) TCGA-RP-A693-06 9 14808037 14808037 C T FREM1 Missense_Mutation p.G997R 0.24 tolerated(0.09) benign(0.03) TCGA-RP-A693-06 9 33048118 33048118 C T SMU1 Missense_Mutation p.E477K 0.19 deleterious(0.04) possibly_damaging(0.606) TCGA-RP-A693-06 9 33265001 33265001 G A CHMP5 5'UTR 0.16 TCGA-RP-A693-06 9 35561051 35561051 C T RUSC2 Silent p.L1436L 0.22 TCGA-RP-A693-06 9 36882013 36882013 C T PAX5 Missense_Mutation p.G334R 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-RP-A693-06 9 71532635 71532635 G A PIP5K1B Missense_Mutation p.G315R 0.19 tolerated(0.06) probably_damaging(0.938) TCGA-RP-A693-06 9 71532636 71532636 G A PIP5K1B Missense_Mutation p.G315E 0.19 tolerated(0.07) possibly_damaging(0.88) TCGA-RP-A693-06 9 75531868 75531868 G A ALDH1A1 Missense_Mutation p.P335S 0.24 deleterious(0) possibly_damaging(0.85) TCGA-RP-A693-06 9 79933186 79933186 A G VPS13A Missense_Mutation p.I1664M 0.30 deleterious(0) probably_damaging(0.91) TCGA-RP-A693-06 9 8317848 8317848 A T PTPRD 3'UTR 0.26 TCGA-RP-A693-06 9 84606115 84606115 C G SPATA31D1 Missense_Mutation p.P244A 0.10 tolerated(1) benign(0.039) TCGA-RP-A693-06 9 84609706 84609706 G A SPATA31D1 Missense_Mutation p.A1441T 0.28 tolerated(1) benign(0.006) TCGA-RP-A693-06 9 90501596 90501596 G A SPATA31E1 Missense_Mutation p.E732K 0.16 tolerated(0.55) benign(0.008) TCGA-RP-A693-06 9 91653042 91653042 C T SHC3 Missense_Mutation p.E508K 0.26 deleterious(0.03) possibly_damaging(0.891) TCGA-RP-A693-06 X 107869518 107869518 A T COL4A5 Missense_Mutation p.K1062I 0.39 unknown(0) TCGA-RP-A693-06 X 11206986 11206986 A T ARHGAP6 Silent p.A313A 0.46 TCGA-RP-A693-06 X 138698539 138698539 C T MCF2 Missense_Mutation p.D425N 0.43 deleterious(0.03) probably_damaging(0.947) TCGA-RP-A693-06 X 140994589 140994589 C A MAGEC1 Missense_Mutation p.H467N 0.43 deleterious_low_confidence(0) benign(0.107) TCGA-RP-A693-06 X 152159652 152159652 C T PNMA5 Missense_Mutation p.G164E 0.49 deleterious(0) probably_damaging(1) TCGA-RP-A693-06 X 24734549 24734549 C T POLA1 Missense_Mutation p.P193L 0.64 tolerated(0.07) benign(0.179) TCGA-RP-A693-06 X 31187623 31187623 G A DMD Missense_Mutation p.S3497F 0.37 possibly_damaging(0.683) TCGA-RP-A693-06 X 3241018 3241018 C T MXRA5 Missense_Mutation p.G903E 0.51 tolerated(0.14) benign(0.045) TCGA-RP-A693-06 X 37029246 37029246 A C FAM47C Missense_Mutation p.K921N 0.51 deleterious(0) possibly_damaging(0.891) TCGA-RP-A693-06 X 37652938 37652938 C T CYBB Silent p.L120L 0.28 TCGA-RP-A693-06 X 37665729 37665729 G A CYBB Silent p.R468R 0.32 TCGA-RP-A693-06 X 39932643 39932643 G A BCOR Silent p.P652P 0.38 TCGA-RP-A693-06 X 48419403 48419403 C T TBC1D25 3'UTR 0.33 TCGA-RP-A693-06 X 65423339 65423339 C T HEPH Silent p.I791I 0.54 TCGA-RP-A693-06 X 70357624 70357624 C T MED12 Missense_Mutation p.P1959S 0.34 benign(0.138) TCGA-RP-A693-06 X 73071650 73071657 TAAAATGG - XIST RNA 0.37 TCGA-RP-A693-06 X 75649316 75649316 C T MAGEE1 Silent p.S331S 0.56 TCGA-RP-A693-06 Y 6114317 6114317 C T TSPY2 Missense_Mutation p.P3L 0.44 deleterious_low_confidence(0) benign(0.005) TCGA-RP-A694-06 10 102048209 102048209 C T PKD2L1 Missense_Mutation p.A788T 0.49 tolerated_low_confidence(0.1) possibly_damaging(0.483) TCGA-RP-A694-06 10 105920824 105920824 A C WDR96 Missense_Mutation p.L1171V 0.60 deleterious(0) probably_damaging(0.99) TCGA-RP-A694-06 10 114177625 114177625 C T ACSL5 Missense_Mutation p.R470C 0.49 deleterious(0) probably_damaging(0.924) TCGA-RP-A694-06 10 123846478 123846478 C T TACC2 Missense_Mutation p.A1488V 0.34 benign(0.002) TCGA-RP-A694-06 10 123847992 123847992 G A TACC2 Splice_Site p.X1820_splice 0.33 TCGA-RP-A694-06 10 125434439 125434439 G A GPR26 Silent p.V258V 0.42 TCGA-RP-A694-06 10 21074810 21074810 C T NEBL Missense_Mutation p.D971N 0.53 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 10 24762671 24762671 A T KIAA1217 Missense_Mutation p.K454I 0.42 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 10 26315398 26315398 T C MYO3A Missense_Mutation p.L297P 0.39 deleterious(0) probably_damaging(0.928) TCGA-RP-A694-06 10 26789870 26789870 C T APBB1IP Missense_Mutation p.H95Y 0.51 tolerated(0.09) benign(0.002) TCGA-RP-A694-06 10 37431195 37431195 C T ANKRD30A Missense_Mutation p.S401L 0.52 tolerated(0.14) benign(0.024) TCGA-RP-A694-06 10 46113685 46113685 G A ZFAND4 Missense_Mutation p.P651S 0.43 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 10 51465042 51465042 C T AGAP7 Missense_Mutation p.G472R 0.27 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 10 52390642 52390642 C T RP11-50E11.3 RNA 0.38 TCGA-RP-A694-06 10 54527764 54527764 A G MBL2 3'UTR 0.45 TCGA-RP-A694-06 10 5541081 5541081 C T CALML5 Missense_Mutation p.M107I 0.35 deleterious(0.03) benign(0.05) TCGA-RP-A694-06 10 5567351 5567351 C T CALML3 Silent p.V101V 0.65 TCGA-RP-A694-06 10 62553727 62553727 G A CDK1 Silent p.K296K 0.51 TCGA-RP-A694-06 10 73767602 73767602 C T CHST3 Silent p.A271A 0.32 TCGA-RP-A694-06 10 88419066 88419066 C T OPN4 Missense_Mutation p.P225L 0.43 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 10 93713600 93713600 C T BTAF1 Missense_Mutation p.S224F 0.47 deleterious(0) benign(0.361) TCGA-RP-A694-06 10 97031432 97031432 C T PDLIM1 Missense_Mutation p.R69K 0.42 tolerated(1) benign(0.001) TCGA-RP-A694-06 11 1023555 1023555 G A MUC6 Silent p.C1160C 0.40 TCGA-RP-A694-06 11 102826022 102826022 G A MMP13 Silent p.F107F 0.39 TCGA-RP-A694-06 11 103026062 103026062 C T DYNC2H1 Silent p.I1192I 0.44 TCGA-RP-A694-06 11 105924095 105924095 G A KBTBD3 Missense_Mutation p.P441S 0.38 tolerated(0.18) probably_damaging(0.926) TCGA-RP-A694-06 11 10615052 10615052 G A MRVI1 Missense_Mutation p.S721F 0.20 deleterious(0) probably_damaging(0.972) TCGA-RP-A694-06 11 10626014 10626014 C T MRVI1 Missense_Mutation p.E561K 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-RP-A694-06 11 113270063 113270063 G A ANKK1 Missense_Mutation p.E458K 0.67 deleterious(0.01) probably_damaging(0.997) TCGA-RP-A694-06 11 117973852 117973852 G A TMPRSS4 Missense_Mutation p.G65E 0.43 tolerated(0.42) benign(0.003) TCGA-RP-A694-06 11 121340728 121340728 G A SORL1 Missense_Mutation p.D100N 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A694-06 11 123396863 123396863 G A GRAMD1B Missense_Mutation p.G3R 0.22 tolerated_low_confidence(0.37) benign(0.011) TCGA-RP-A694-06 11 123516298 123516298 G A SCN3B Silent p.F72F 0.27 TCGA-RP-A694-06 11 123624517 123624517 G A OR6X1 Missense_Mutation p.S237F 0.26 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 11 123755222 123755222 G A TMEM225 Silent p.F101F 0.33 TCGA-RP-A694-06 11 124135573 124135573 C T OR8G5 Missense_Mutation p.S284F 0.30 deleterious(0.02) benign(0.199) TCGA-RP-A694-06 11 124180408 124180408 G A OR8D1 Silent p.F85F 0.23 TCGA-RP-A694-06 11 124190054 124190054 G A OR8D2 Silent p.L14L 0.30 TCGA-RP-A694-06 11 124747489 124747489 C T ROBO3 Missense_Mutation p.S974L 0.31 deleterious(0.01) benign(0.178) TCGA-RP-A694-06 11 128858011 128858011 A G ARHGAP32 Missense_Mutation p.V388A 0.43 deleterious(0) probably_damaging(0.997) TCGA-RP-A694-06 11 17449860 17449860 G A ABCC8 Silent p.G672G 0.36 TCGA-RP-A694-06 11 20676445 20676445 C T SLC6A5 3'UTR 0.29 TCGA-RP-A694-06 11 2356893 2356893 G A CD81-AS1 Intron 0.31 TCGA-RP-A694-06 11 25071620 25071620 C T LUZP2 Nonsense_Mutation p.Q268* 0.21 TCGA-RP-A694-06 11 30944142 30944142 G A DCDC1 Missense_Mutation p.S1014F 0.43 deleterious(0.01) possibly_damaging(0.683) TCGA-RP-A694-06 11 44130751 44130751 C T EXT2 Nonsense_Mutation p.R215* 0.31 TCGA-RP-A694-06 11 4510277 4510277 C T OR52K1 Silent p.F49F 0.31 TCGA-RP-A694-06 11 4661717 4661717 C T OR51D1 Missense_Mutation p.L233F 0.24 tolerated(0.25) possibly_damaging(0.614) TCGA-RP-A694-06 11 4674005 4674005 A T OR51E1 Missense_Mutation p.K83N 0.39 deleterious(0.01) possibly_damaging(0.653) TCGA-RP-A694-06 11 4790698 4790698 C T OR51F1 Missense_Mutation p.M150I 0.34 tolerated(1) benign(0.006) TCGA-RP-A694-06 11 48238577 48238577 C T OR4B1 Silent p.S72S 0.26 TCGA-RP-A694-06 11 48267471 48267471 G A OR4X2 Silent p.A272A 0.34 TCGA-RP-A694-06 11 4929285 4929285 C T OR51A7 Missense_Mutation p.S229F 0.38 deleterious(0) probably_damaging(0.988) TCGA-RP-A694-06 11 4936035 4936035 G A OR51G2 Missense_Mutation p.L287F 0.30 tolerated(0.06) probably_damaging(1) TCGA-RP-A694-06 11 5080387 5080387 G A OR52E2 Silent p.F157F 0.29 TCGA-RP-A694-06 11 5221765 5221765 G A OR51V1 Missense_Mutation p.H56Y 0.26 tolerated(0.44) benign(0.052) TCGA-RP-A694-06 11 5275568 5275568 C T HBG2 Missense_Mutation p.S90N 0.19 deleterious(0.02) possibly_damaging(0.543) TCGA-RP-A694-06 11 55111310 55111310 C T OR4A16 Silent p.L212L 0.22 TCGA-RP-A694-06 11 55944314 55944314 C T OR5J2 Missense_Mutation p.S74L 0.28 deleterious(0) benign(0.167) TCGA-RP-A694-06 11 56310321 56310321 C T OR5M11 Missense_Mutation p.R138K 0.32 tolerated(1) benign(0.005) TCGA-RP-A694-06 11 56409695 56409695 A T OR5AP2 Missense_Mutation p.F74Y 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-RP-A694-06 11 57995780 57995780 G A OR10Q1 Silent p.L190L 0.53 TCGA-RP-A694-06 11 58125670 58125670 C T OR5B17 Silent p.R291R 0.19 TCGA-RP-A694-06 11 58206903 58206903 G A OR5B12 Missense_Mutation p.S241F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-RP-A694-06 11 58491919 58491919 G A GLYAT Silent p.S17S 0.26 TCGA-RP-A694-06 11 58491920 58491920 G A GLYAT Missense_Mutation p.S17F 0.24 deleterious(0.01) benign(0.236) TCGA-RP-A694-06 11 59189677 59189677 G A OR5A2 Silent p.T250T 0.27 TCGA-RP-A694-06 11 59283086 59283086 G A OR4D9 Missense_Mutation p.R234K 0.36 tolerated(0.13) benign(0.047) TCGA-RP-A694-06 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.34 TCGA-RP-A694-06 11 60183853 60183853 G A MS4A14 Nonsense_Mutation p.W504* 0.21 TCGA-RP-A694-06 11 62378686 62378686 G A EML3 Missense_Mutation p.P109S 0.40 tolerated(0.15) benign(0.39) TCGA-RP-A694-06 11 63071657 63071657 C T SLC22A10 Missense_Mutation p.H455Y 0.24 tolerated(0.39) benign(0.013) TCGA-RP-A694-06 11 63174006 63174006 C T SLC22A9 Missense_Mutation p.H371Y 0.19 deleterious(0) probably_damaging(0.934) TCGA-RP-A694-06 11 63488152 63488152 C T RTN3 Silent p.F726F 0.23 TCGA-RP-A694-06 11 66105743 66105743 G A BRMS1 Missense_Mutation p.A235V 0.43 tolerated(0.06) possibly_damaging(0.729) TCGA-RP-A694-06 11 6648871 6648871 A G DCHS1 Missense_Mutation p.L1800P 0.08 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 11 71277269 71277269 C T KRTAP5-10 3'UTR 0.29 TCGA-RP-A694-06 11 73073594 73073594 C T ARHGEF17 Missense_Mutation p.P1604L 0.11 deleterious(0) benign(0.038) TCGA-RP-A694-06 11 74415687 74415687 C T CHRDL2 Missense_Mutation p.D199N 0.29 tolerated(0.13) possibly_damaging(0.839) TCGA-RP-A694-06 11 76872114 76872114 C T MYO7A Silent p.S432S 0.42 TCGA-RP-A694-06 11 78443472 78443472 G A TENM4 Silent p.P1009P 0.38 TCGA-RP-A694-06 11 8704335 8704335 C T RPL27A 5'UTR 0.24 TCGA-RP-A694-06 11 92087650 92087650 G A FAT3 Missense_Mutation p.R791Q 0.33 probably_damaging(0.999) TCGA-RP-A694-06 11 94039854 94039854 C T FOLR4 Missense_Mutation p.P105L 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 11 99690398 99690398 G A CNTN5 Missense_Mutation p.G60E 0.13 tolerated_low_confidence(0.12) benign(0.016) TCGA-RP-A694-06 12 101436167 101436167 G A ANO4 Missense_Mutation p.G324S 0.32 tolerated(0.51) probably_damaging(1) TCGA-RP-A694-06 12 102045065 102045065 G A MYBPC1 Missense_Mutation p.E449K 0.20 tolerated(0.06) possibly_damaging(0.734) TCGA-RP-A694-06 12 108011986 108011986 C T BTBD11 Silent p.I761I 0.27 TCGA-RP-A694-06 12 108034134 108034134 G A BTBD11 Silent p.L928L 0.29 TCGA-RP-A694-06 12 108685663 108685663 C T CMKLR1 Missense_Mutation p.M359I 0.36 tolerated(0.2) benign(0.001) TCGA-RP-A694-06 12 109017173 109017173 G A SELPLG Missense_Mutation p.S320F 0.27 tolerated(0.1) benign(0.12) TCGA-RP-A694-06 12 111291280 111291280 G A CCDC63 Silent p.A27A 0.21 TCGA-RP-A694-06 12 11214258 11214258 A G TAS2R46 Silent p.H212H 0.30 TCGA-RP-A694-06 12 123706345 123706345 G A MPHOSPH9 5'UTR 0.29 TCGA-RP-A694-06 12 123798232 123798232 G A SBNO1 Missense_Mutation p.S1052F 0.16 deleterious(0) possibly_damaging(0.871) TCGA-RP-A694-06 12 124323035 124323035 C T DNAH10 Silent p.I1527I 0.40 TCGA-RP-A694-06 12 13229022 13229022 C T KIAA1467 Silent p.F529F 0.28 TCGA-RP-A694-06 12 15704571 15704571 A C PTPRO Missense_Mutation p.I842L 0.36 tolerated(1) benign(0.001) TCGA-RP-A694-06 12 18891730 18891730 C T CAPZA3 Silent p.F176F 0.20 TCGA-RP-A694-06 12 25314101 25314101 C T CASC1 Missense_Mutation p.A18T 0.33 tolerated(0.08) unknown(0) TCGA-RP-A694-06 12 2705124 2705124 C T CACNA1C Silent p.S916S 0.29 TCGA-RP-A694-06 12 3935326 3935326 G A PARP11 Silent p.F114F 0.28 TCGA-RP-A694-06 12 40693026 40693026 G A LRRK2 Missense_Mutation p.V1155M 0.26 tolerated(0.16) benign(0.017) TCGA-RP-A694-06 12 42491381 42491381 G A GXYLT1 Nonsense_Mutation p.R342* 0.30 TCGA-RP-A694-06 12 43769914 43769914 T A ADAMTS20 Missense_Mutation p.E1753V 0.25 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 12 43944801 43944801 C T ADAMTS20 Missense_Mutation p.G122R 0.56 tolerated(0.43) benign(0.012) TCGA-RP-A694-06 12 4652969 4652969 C T RAD51AP1 Silent p.S36S 0.18 TCGA-RP-A694-06 12 47471283 47471283 C T AMIGO2 Silent p.R501R 0.26 TCGA-RP-A694-06 12 47629092 47629092 C T PCED1B Silent p.F82F 0.28 TCGA-RP-A694-06 12 4829837 4829837 G T GALNT8 5'UTR 0.33 TCGA-RP-A694-06 12 48458935 48458935 C T SENP1 Silent p.K396K 0.23 TCGA-RP-A694-06 12 48482657 48482657 G A SENP1 Missense_Mutation p.P103S 0.27 tolerated(0.11) possibly_damaging(0.449) TCGA-RP-A694-06 12 49308208 49308208 G A CCDC65 Missense_Mutation p.E108K 0.29 deleterious(0) possibly_damaging(0.793) TCGA-RP-A694-06 12 52306257 52306257 C T ACVRL1 5'UTR 0.31 TCGA-RP-A694-06 12 53454783 53454783 C T TENC1 Silent p.P1041P 0.30 TCGA-RP-A694-06 12 53468988 53468988 T G SPRYD3 Missense_Mutation p.S88R 0.34 tolerated(0.13) benign(0.036) TCGA-RP-A694-06 12 54063086 54063086 G A ATP5G2 Missense_Mutation p.L110F 0.33 tolerated(0.18) benign(0.013) TCGA-RP-A694-06 12 54063087 54063087 T A ATP5G2 Silent p.S109S 0.32 TCGA-RP-A694-06 12 54367532 54367532 C T HOXC11 Silent p.P169P 0.27 TCGA-RP-A694-06 12 54936410 54936410 C T NCKAP1L Missense_Mutation p.P1109S 0.24 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 12 54970422 54970422 C T PDE1B Missense_Mutation p.R482C 0.45 deleterious(0) possibly_damaging(0.586) TCGA-RP-A694-06 12 55615378 55615378 G A OR10A7 Silent p.V190V 0.28 TCGA-RP-A694-06 12 55715062 55715062 C T OR6C1 Missense_Mutation p.P227S 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-RP-A694-06 12 55726260 55726260 C T OR6C3 Missense_Mutation p.P259L 0.32 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-RP-A694-06 12 55726314 55726314 C T OR6C3 Missense_Mutation p.S277F 0.27 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-RP-A694-06 12 55863137 55863137 C T OR6C70 Silent p.A262A 0.38 TCGA-RP-A694-06 12 56492495 56492495 C T ERBB3 Intron 0.29 TCGA-RP-A694-06 12 56998581 56998581 G A BAZ2A Silent p.S919S 0.26 TCGA-RP-A694-06 12 70048697 70048697 G A BEST3 Missense_Mutation p.S666L 0.30 deleterious_low_confidence(0.01) benign(0.022) TCGA-RP-A694-06 12 70824403 70824403 G A KCNMB4 Silent p.A201A 0.34 TCGA-RP-A694-06 12 70988446 70988446 G A PTPRB Silent p.S439S 0.36 TCGA-RP-A694-06 12 7252512 7252512 G A C1RL Nonsense_Mutation p.Q201* 0.41 TCGA-RP-A694-06 12 72866929 72866929 G A TRHDE Missense_Mutation p.G473D 0.23 deleterious(0) possibly_damaging(0.688) TCGA-RP-A694-06 12 75601621 75601621 G A KCNC2 Missense_Mutation p.T48I 0.30 tolerated(0.31) benign(0.209) TCGA-RP-A694-06 12 7947346 7947346 G A NANOG Silent p.G191G 0.24 TCGA-RP-A694-06 12 80714206 80714206 A G OTOGL Silent p.L1260L 0.26 TCGA-RP-A694-06 12 85408254 85408254 G A TSPAN19 3'UTR 0.41 TCGA-RP-A694-06 12 8630023 8630023 G A CLEC6A Missense_Mutation p.R198K 0.32 tolerated(0.33) benign(0.315) TCGA-RP-A694-06 12 91363863 91363863 G A EPYC Silent p.I252I 0.27 TCGA-RP-A694-06 12 91449566 91449566 G C KERA Missense_Mutation p.L165V 0.30 deleterious(0) possibly_damaging(0.897) TCGA-RP-A694-06 12 94975964 94975964 G A TMCC3 Silent p.I143I 0.35 TCGA-RP-A694-06 12 97137883 97137883 T G C12orf55 Missense_Mutation p.L2548R 0.35 deleterious(0) benign(0.001) TCGA-RP-A694-06 12 99056253 99056253 G C APAF1 Missense_Mutation p.D244H 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 13 100635342 100635342 A C ZIC2 Missense_Mutation p.K342Q 0.31 deleterious(0) benign(0.393) TCGA-RP-A694-06 13 114188588 114188588 C T TMCO3 Intron 0.30 TCGA-RP-A694-06 13 19748117 19748117 C A TUBA3C Missense_Mutation p.M413I 0.31 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-RP-A694-06 13 27333220 27333220 C T GPR12 Missense_Mutation p.G249R 0.31 tolerated(0.06) probably_damaging(0.914) TCGA-RP-A694-06 13 28539080 28539080 A T CDX2 Missense_Mutation p.F205Y 0.23 deleterious(0.01) possibly_damaging(0.576) TCGA-RP-A694-06 13 37269555 37269555 C T SERTM1 3'UTR 0.19 TCGA-RP-A694-06 13 38225594 38225594 G A TRPC4 Silent p.D629D 0.28 TCGA-RP-A694-06 13 52952393 52952393 G A THSD1 Missense_Mutation p.P571L 0.32 deleterious(0.02) possibly_damaging(0.616) TCGA-RP-A694-06 13 77642817 77642817 A G MYCBP2 Silent p.S3980S 0.31 TCGA-RP-A694-06 14 100165837 100165837 C T CYP46A1 Missense_Mutation p.S106F 0.26 tolerated(0.12) benign(0.006) TCGA-RP-A694-06 14 101526167 101526167 C T MIR154 RNA 0.23 TCGA-RP-A694-06 14 102449925 102449925 C T DYNC1H1 Silent p.I480I 0.26 TCGA-RP-A694-06 14 105408602 105408602 G A AHNAK2 Missense_Mutation p.L4396F 0.34 benign(0.214) TCGA-RP-A694-06 14 105408643 105408643 G A AHNAK2 Missense_Mutation p.P4382L 0.32 probably_damaging(0.996) TCGA-RP-A694-06 14 105408644 105408644 G A AHNAK2 Missense_Mutation p.P4382S 0.32 probably_damaging(0.997) TCGA-RP-A694-06 14 106667824 106667824 G A IGHV3-20 Silent p.S36S 0.33 TCGA-RP-A694-06 14 106866571 106866571 C T IGHV3-38 Silent p.G61G 0.23 TCGA-RP-A694-06 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.10 tolerated(0.06) benign(0.055) TCGA-RP-A694-06 14 20665555 20665555 C T OR11G2 Missense_Mutation p.R21C 0.29 tolerated_low_confidence(0.19) benign(0) TCGA-RP-A694-06 14 22134111 22134111 C T OR4E2 Missense_Mutation p.S272F 0.38 deleterious(0) probably_damaging(0.972) TCGA-RP-A694-06 14 22265532 22265532 C T TRAV8-1 5'UTR 0.33 TCGA-RP-A694-06 14 22279905 22279905 C T TRAV9-1 Missense_Mutation p.P32S 0.41 deleterious(0) benign(0) TCGA-RP-A694-06 14 22434209 22434209 G A TRAV12-3 Missense_Mutation p.D88N 0.28 tolerated(1) benign(0.007) TCGA-RP-A694-06 14 33165255 33165255 C T AKAP6 Missense_Mutation p.S980F 0.37 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 14 44976298 44976298 T A FSCB 5'UTR 0.50 TCGA-RP-A694-06 14 50585517 50585517 G A SOS2 Missense_Mutation p.P1182S 0.24 tolerated(0.49) probably_damaging(0.996) TCGA-RP-A694-06 14 50641240 50641240 G A SOS2 Missense_Mutation p.R334C 0.14 deleterious(0) possibly_damaging(0.846) TCGA-RP-A694-06 14 52781249 52781249 T G PTGER2 5'UTR 0.31 TCGA-RP-A694-06 14 60194322 60194322 G A RTN1 Silent p.I360I 0.48 TCGA-RP-A694-06 14 63416778 63416778 C T KCNH5 Intron 0.53 TCGA-RP-A694-06 14 65209911 65209911 C T PLEKHG3 Silent p.V994V 0.26 TCGA-RP-A694-06 14 65210301 65210301 C - PLEKHG3 Frame_Shift_Del p.Q1125Sfs*25 0.27 TCGA-RP-A694-06 14 65241932 65241932 C T SPTB Missense_Mutation p.E1585K 0.32 tolerated(0.94) benign(0.045) TCGA-RP-A694-06 14 69813851 69813851 G A GALNT16 Missense_Mutation p.G456R 0.45 tolerated(0.12) probably_damaging(0.986) TCGA-RP-A694-06 14 71064454 71064454 G A MED6 Silent p.I21I 0.26 TCGA-RP-A694-06 14 72985152 72985152 G A RGS6 Silent p.G395G 0.22 TCGA-RP-A694-06 14 74756213 74756213 G A ABCD4 Missense_Mutation p.P477S 0.22 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 14 75747713 75747713 C T FOS Silent p.L243L 0.35 TCGA-RP-A694-06 14 81554307 81554307 G A TSHR Silent p.R109R 0.28 TCGA-RP-A694-06 14 88707124 88707124 C T KCNK10 Missense_Mutation p.G148E 0.34 deleterious(0.04) probably_damaging(0.986) TCGA-RP-A694-06 14 89336529 89336529 C A TTC8 Missense_Mutation p.L346I 0.24 tolerated(0.06) probably_damaging(0.979) TCGA-RP-A694-06 14 92278808 92278808 G A TC2N Missense_Mutation p.S50F 0.27 tolerated(0.23) benign(0.013) TCGA-RP-A694-06 14 94088152 94088152 C T UNC79 Missense_Mutation p.R1348W 0.28 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-RP-A694-06 14 95030052 95030052 C T SERPINA4 Missense_Mutation p.S78F 0.26 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 15 102198041 102198041 G A TARSL2 Missense_Mutation p.R698C 0.50 deleterious(0.04) benign(0.066) TCGA-RP-A694-06 15 23889196 23889196 C T MAGEL2 Missense_Mutation p.E629K 0.27 deleterious_low_confidence(0.02) benign(0.272) TCGA-RP-A694-06 15 23931501 23931501 C T NDN Silent p.Q288Q 0.19 TCGA-RP-A694-06 15 25449371 25449371 C T SNORD115-20 5'Flank 0.26 TCGA-RP-A694-06 15 25490658 25490658 G A SNORD115-41 RNA 0.22 TCGA-RP-A694-06 15 26806152 26806152 G A GABRB3 Missense_Mutation p.P336L 0.35 deleterious(0.01) possibly_damaging(0.876) TCGA-RP-A694-06 15 27193298 27193298 T G GABRA5 Missense_Mutation p.L436W 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-RP-A694-06 15 27777913 27777913 G A GABRG3 Silent p.R430R 0.42 TCGA-RP-A694-06 15 42041410 42041410 C T MGA Nonsense_Mutation p.Q1869* 0.51 TCGA-RP-A694-06 15 50535125 50535125 G A HDC Nonsense_Mutation p.Q441* 0.34 TCGA-RP-A694-06 15 50592989 50592989 G A GABPB1 Missense_Mutation p.P244S 0.42 tolerated(0.8) probably_damaging(0.986) TCGA-RP-A694-06 15 50786230 50786230 C T USP8 Intron 0.60 TCGA-RP-A694-06 15 52571742 52571742 G A MYO5C Missense_Mutation p.R90C 0.47 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 15 60970872 60970872 C T RP11-219B17.2 5'Flank 0.22 TCGA-RP-A694-06 15 62985100 62985100 C T TLN2 Missense_Mutation p.S392F 0.43 deleterious(0.03) probably_damaging(0.986) TCGA-RP-A694-06 15 63125822 63125822 A G TLN2 Silent p.Q2374Q 0.37 TCGA-RP-A694-06 15 63631025 63631025 G A CA12 Silent p.F289F 0.40 TCGA-RP-A694-06 15 64506241 64506241 C T CSNK1G1 Missense_Mutation p.G176D 0.24 deleterious(0.01) possibly_damaging(0.51) TCGA-RP-A694-06 15 65347555 65347555 G A RASL12 Silent p.F161F 0.41 TCGA-RP-A694-06 15 69320753 69320753 C T NOX5 Intron 0.34 TCGA-RP-A694-06 15 70347595 70347595 G A TLE3 Silent p.P460P 0.34 TCGA-RP-A694-06 15 74628251 74628251 C T CCDC33 Intron 0.22 TCGA-RP-A694-06 15 76075543 76075543 G A RN7SL319P 5'Flank 0.30 TCGA-RP-A694-06 15 76075544 76075544 G A RN7SL319P 5'Flank 0.30 TCGA-RP-A694-06 15 81241059 81241059 G A KIAA1199 Intron 0.24 TCGA-RP-A694-06 15 90335775 90335775 G A ANPEP Silent p.A756A 0.21 TCGA-RP-A694-06 15 90335776 90335776 G A ANPEP Missense_Mutation p.A756V 0.23 deleterious(0.04) benign(0.07) TCGA-RP-A694-06 15 91292831 91292831 C T BLM Silent p.F111F 0.37 TCGA-RP-A694-06 16 14980651 14980651 C T NOMO1 Missense_Mutation p.P1086S 0.22 deleterious(0.02) probably_damaging(0.93) TCGA-RP-A694-06 16 14980652 14980652 C T NOMO1 Missense_Mutation p.P1086L 0.22 deleterious(0.01) probably_damaging(0.965) TCGA-RP-A694-06 16 19483434 19483434 G A TMC5 Missense_Mutation p.E603K 0.30 tolerated(0.12) possibly_damaging(0.54) TCGA-RP-A694-06 16 21222689 21222689 G A ZP2 Silent p.F30F 0.29 TCGA-RP-A694-06 16 21261893 21261893 G A ANKS4B Missense_Mutation p.V336M 0.15 deleterious(0.03) benign(0.126) TCGA-RP-A694-06 16 23224067 23224067 G A SCNN1G Missense_Mutation p.E455K 0.28 deleterious(0) possibly_damaging(0.79) TCGA-RP-A694-06 16 24226084 24226084 G A PRKCB Missense_Mutation p.E657K 0.35 tolerated(0.75) benign(0.002) TCGA-RP-A694-06 16 28617439 28617439 G A SULT1A1 Missense_Mutation p.T238I 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-RP-A694-06 16 3085440 3085440 G A CCDC64B Missense_Mutation p.P20S 0.37 deleterious(0.01) unknown(0) TCGA-RP-A694-06 16 31422665 31422665 G A ITGAD Missense_Mutation p.E512K 0.28 tolerated(0.06) benign(0.025) TCGA-RP-A694-06 16 320791 320791 C T RGS11 Missense_Mutation p.R340Q 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-RP-A694-06 16 3293117 3293117 G A MEFV 3'UTR 0.36 TCGA-RP-A694-06 16 3363074 3363074 C T ZNF75A 5'UTR 0.23 TCGA-RP-A694-06 16 4411379 4411379 G A CORO7 Missense_Mutation p.P557L 0.19 tolerated(0.21) benign(0.077) TCGA-RP-A694-06 16 46705721 46705721 G A VPS35 Nonsense_Mutation p.Q474* 0.47 TCGA-RP-A694-06 16 48173134 48173134 G A ABCC12 Silent p.F257F 0.30 TCGA-RP-A694-06 16 57088714 57088714 C T NLRC5 Silent p.T1186T 0.28 TCGA-RP-A694-06 16 68867355 68867355 C T CDH1 Missense_Mutation p.R868C 0.24 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 16 68867435 68867435 T G CDH1 3'UTR 0.37 TCGA-RP-A694-06 16 71423854 71423854 C T CALB2 3'UTR 0.35 TCGA-RP-A694-06 16 71692653 71692653 G A PHLPP2 Missense_Mutation p.P684L 0.30 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 16 77232246 77232246 C T MON1B 3'UTR 0.45 TCGA-RP-A694-06 16 77401593 77401593 C T ADAMTS18 Missense_Mutation p.E175K 0.30 deleterious(0) probably_damaging(0.911) TCGA-RP-A694-06 16 80583506 80583506 C T DYNLRB2 Missense_Mutation p.L69F 0.19 tolerated(0.06) probably_damaging(0.956) TCGA-RP-A694-06 16 89357037 89357037 G A ANKRD11 Silent p.F199F 0.28 TCGA-RP-A694-06 17 10215368 10215368 A G MYH13 Missense_Mutation p.L1464P 0.35 deleterious(0.03) possibly_damaging(0.745) TCGA-RP-A694-06 17 10419277 10419277 G A MYH1 Silent p.S157S 0.29 TCGA-RP-A694-06 17 10448756 10448756 C T MYH2 Missense_Mutation p.E138K 0.30 tolerated(0.07) benign(0.041) TCGA-RP-A694-06 17 10535910 10535910 G A MYH3 Silent p.I1613I 0.29 TCGA-RP-A694-06 17 10547720 10547720 G A MYH3 Missense_Mutation p.P453L 0.39 deleterious(0) benign(0.299) TCGA-RP-A694-06 17 11550485 11550485 G A DNAH9 Silent p.T689T 0.34 TCGA-RP-A694-06 17 15995360 15995360 G A NCOR1 Missense_Mutation p.P945S 0.23 probably_damaging(0.993) TCGA-RP-A694-06 17 18025675 18025675 C T MYO15A Silent p.S1187S 0.28 TCGA-RP-A694-06 17 26084266 26084266 A T NOS2 3'UTR 0.18 TCGA-RP-A694-06 17 26084267 26084267 G A NOS2 3'UTR 0.17 TCGA-RP-A694-06 17 28380765 28380765 C T EFCAB5 Missense_Mutation p.S598L 0.19 tolerated(0.75) benign(0.002) TCGA-RP-A694-06 17 2966353 2966353 G A OR1D5 Silent p.I183I 0.19 TCGA-RP-A694-06 17 3030057 3030057 G A OR1G1 Silent p.P263P 0.36 TCGA-RP-A694-06 17 30536451 30536451 C T RHOT1 Silent p.L608L 0.31 TCGA-RP-A694-06 17 30687920 30687920 C T ZNF207 Missense_Mutation p.P162L 0.22 deleterious(0.04) possibly_damaging(0.851) TCGA-RP-A694-06 17 33806727 33806727 C T SLFN12L Missense_Mutation p.E168K 0.18 tolerated(0.99) benign(0.003) TCGA-RP-A694-06 17 36483957 36483967 TCCAATCCCTT - GPR179 Frame_Shift_Del p.K1829Pfs*6 0.42 TCGA-RP-A694-06 17 37902191 37902191 C T GRB7 Silent p.F455F 0.26 TCGA-RP-A694-06 17 38240093 38240093 C T THRA Silent p.F76F 0.23 TCGA-RP-A694-06 17 3851045 3851045 C T ATP2A3 Silent p.E245E 0.28 TCGA-RP-A694-06 17 3851047 3851047 C T ATP2A3 Missense_Mutation p.E245K 0.27 deleterious(0.04) possibly_damaging(0.625) TCGA-RP-A694-06 17 38911122 38911122 G A KRT25 Silent p.F134F 0.25 TCGA-RP-A694-06 17 39036926 39036926 C T KRT20 Silent p.L190L 0.46 TCGA-RP-A694-06 17 39296244 39296244 G A KRTAP4-6 Missense_Mutation p.R166C 0.14 tolerated(0.13) unknown(0) TCGA-RP-A694-06 17 40321499 40321499 T C KCNH4 Missense_Mutation p.N529S 0.20 tolerated(0.27) benign(0.009) TCGA-RP-A694-06 17 43171113 43171113 C T NMT1 Missense_Mutation p.P149L 0.38 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 17 43923295 43923295 C T SPPL2C Silent p.Y341Y 0.14 TCGA-RP-A694-06 17 4463820 4463820 C T GGT6 5'UTR 0.45 TCGA-RP-A694-06 17 45368358 45368358 C A ITGB3 Silent p.L388L 0.37 TCGA-RP-A694-06 17 45368359 45368359 C T ITGB3 Missense_Mutation p.P389S 0.37 tolerated(0.06) probably_damaging(1) TCGA-RP-A694-06 17 46054122 46054122 T C CDK5RAP3 Silent p.T281T 0.20 TCGA-RP-A694-06 17 47044540 47044540 C T GIP Missense_Mutation p.G19R 0.37 tolerated(0.13) possibly_damaging(0.694) TCGA-RP-A694-06 17 47126800 47126800 G A IGF2BP1 Silent p.R576R 0.28 TCGA-RP-A694-06 17 53156080 53156080 C T STXBP4 Missense_Mutation p.P447S 0.15 tolerated(0.61) benign(0.001) TCGA-RP-A694-06 17 53156081 53156081 C T STXBP4 Missense_Mutation p.P447L 0.15 tolerated(0.05) benign(0.04) TCGA-RP-A694-06 17 54926111 54926111 G A DGKE Missense_Mutation p.D315N 0.15 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 17 6023850 6023850 C T WSCD1 Missense_Mutation p.R533W 0.23 deleterious(0.02) possibly_damaging(0.67) TCGA-RP-A694-06 17 61994716 61994716 G A GH1 Silent p.L203L 0.41 TCGA-RP-A694-06 17 65040721 65040721 C T CACNG1 5'UTR 0.38 TCGA-RP-A694-06 17 68171225 68171225 A T KCNJ2 Missense_Mutation p.E15D 0.52 tolerated(0.24) benign(0.069) TCGA-RP-A694-06 17 73234357 73234357 G A GGA3 3'UTR 0.44 TCGA-RP-A694-06 17 74005421 74005421 C T EVPL Missense_Mutation p.E1289K 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-RP-A694-06 17 74477506 74477506 G A RHBDF2 Missense_Mutation p.P34L 0.46 tolerated_low_confidence(0.15) benign(0.003) TCGA-RP-A694-06 17 7487164 7487164 G A MPDU1 5'UTR 0.28 TCGA-RP-A694-06 17 74943966 74943966 C T MGAT5B Missense_Mutation p.P669S 0.25 deleterious_low_confidence(0.02) benign(0.425) TCGA-RP-A694-06 17 79094417 79094417 G A AATK Missense_Mutation p.P1107S 0.57 tolerated(0.32) benign(0.011) TCGA-RP-A694-06 17 79409969 79409969 C T RP11-1055B8.7 Missense_Mutation p.P532S 0.47 probably_damaging(0.998) TCGA-RP-A694-06 17 79409970 79409970 C T RP11-1055B8.7 Missense_Mutation p.P532L 0.44 probably_damaging(0.999) TCGA-RP-A694-06 17 7950591 7950591 C T ALOX15B Silent p.I491I 0.31 TCGA-RP-A694-06 17 79910767 79910767 G A NOTUM 3'UTR 0.36 TCGA-RP-A694-06 17 81042702 81042702 C T METRNL Intron 0.20 TCGA-RP-A694-06 18 28586945 28586945 C T DSC3 Missense_Mutation p.A606T 0.23 tolerated(0.07) possibly_damaging(0.587) TCGA-RP-A694-06 18 28720197 28720197 G A DSC1 Missense_Mutation p.S443F 0.26 tolerated(0.61) possibly_damaging(0.819) TCGA-RP-A694-06 18 28983456 28983456 C T DSG4 Missense_Mutation p.P499S 0.20 tolerated(0.96) benign(0.003) TCGA-RP-A694-06 18 31319241 31319241 C T ASXL3 Silent p.L625L 0.16 TCGA-RP-A694-06 18 40854290 40854290 C T SYT4 Nonsense_Mutation p.W35* 0.24 TCGA-RP-A694-06 18 43212361 43212361 G A SLC14A2 Missense_Mutation p.G190R 0.28 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 18 43243841 43243841 C T SLC14A2 Silent p.I481I 0.38 TCGA-RP-A694-06 18 44559857 44559857 G A TCEB3B Silent p.F593F 0.24 TCGA-RP-A694-06 18 45567438 45567438 G A ZBTB7C Missense_Mutation p.P14L 0.29 deleterious(0) probably_damaging(0.985) TCGA-RP-A694-06 18 48241495 48241495 G A MAPK4 Missense_Mutation p.R198Q 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-RP-A694-06 18 55315701 55315701 C T ATP8B1 3'UTR 0.33 TCGA-RP-A694-06 18 56204466 56204466 G A ALPK2 Missense_Mutation p.P985S 0.26 tolerated(0.12) possibly_damaging(0.539) TCGA-RP-A694-06 18 61306458 61306458 C T SERPINB4 Missense_Mutation p.M243I 0.17 deleterious(0) probably_damaging(0.982) TCGA-RP-A694-06 18 61310722 61310722 G A SERPINB4 Silent p.S30S 0.28 TCGA-RP-A694-06 18 61328408 61328408 G A SERPINB3 Silent p.L15L 0.31 TCGA-RP-A694-06 18 65180673 65180673 C A DSEL Missense_Mutation p.W401C 0.29 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 18 67406324 67406324 G A DOK6 Missense_Mutation p.M241I 0.26 deleterious(0.03) benign(0.091) TCGA-RP-A694-06 18 70205416 70205416 G A CBLN2 Silent p.L224L 0.36 TCGA-RP-A694-06 18 70526232 70526232 G A NETO1 Missense_Mutation p.H100Y 0.30 tolerated(0.12) possibly_damaging(0.88) TCGA-RP-A694-06 19 10087932 10087932 C T COL5A3 Silent p.K1087K 0.28 TCGA-RP-A694-06 19 10089914 10089914 C T COL5A3 Missense_Mutation p.G923E 0.19 unknown(0) TCGA-RP-A694-06 19 1036204 1036204 G A CNN2 Missense_Mutation p.D156N 0.31 tolerated(0.17) benign(0.007) TCGA-RP-A694-06 19 10670352 10670352 G A KRI1 Silent p.S326S 0.40 TCGA-RP-A694-06 19 12543207 12543207 G A ZNF443 Missense_Mutation p.P59S 0.14 tolerated(0.6) benign(0.066) TCGA-RP-A694-06 19 13010515 13010515 C T GCDH 3'UTR 0.29 TCGA-RP-A694-06 19 14001203 14001203 G A C19orf57 Nonsense_Mutation p.Q156* 0.32 TCGA-RP-A694-06 19 15535023 15535023 G A WIZ Silent p.F732F 0.27 TCGA-RP-A694-06 19 15537946 15537946 G T WIZ Missense_Mutation p.L310M 0.33 tolerated(0.06) possibly_damaging(0.668) TCGA-RP-A694-06 19 16059913 16059913 C T OR10H4 Silent p.Y32Y 0.28 TCGA-RP-A694-06 19 16591433 16591433 C T CALR3 Missense_Mutation p.E335K 0.45 tolerated(0.95) benign(0.002) TCGA-RP-A694-06 19 17017764 17017764 C T CPAMD8 Missense_Mutation p.R1389Q 0.33 tolerated(1) benign(0.002) TCGA-RP-A694-06 19 17946846 17946846 C T JAK3 Missense_Mutation p.E601K 0.33 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 19 19337658 19337658 G A NCAN Missense_Mutation p.R479K 0.20 tolerated(0.23) benign(0.005) TCGA-RP-A694-06 19 19645929 19645929 C T YJEFN3 Silent p.V135V 0.29 TCGA-RP-A694-06 19 19653748 19653748 C T CILP2 Missense_Mutation p.A315V 0.33 tolerated(0.12) probably_damaging(0.974) TCGA-RP-A694-06 19 22154193 22154193 G A ZNF208 Missense_Mutation p.H1215Y 0.32 deleterious(0.01) possibly_damaging(0.832) TCGA-RP-A694-06 19 22155446 22155446 C T ZNF208 Missense_Mutation p.R797K 0.18 tolerated(0.38) benign(0) TCGA-RP-A694-06 19 22939010 22939010 G A ZNF99 3'Flank 0.22 TCGA-RP-A694-06 19 23159112 23159112 C T ZNF728 Missense_Mutation p.E343K 0.23 tolerated(0.09) benign(0.004) TCGA-RP-A694-06 19 30934508 30934508 G A ZNF536 Silent p.A13A 0.28 TCGA-RP-A694-06 19 34712526 34712526 C T LSM14A Silent p.F417F 0.33 TCGA-RP-A694-06 19 38572191 38572191 C T SIPA1L3 5'UTR 0.26 TCGA-RP-A694-06 19 38931480 38931480 C T RYR1 Silent p.F47F 0.36 TCGA-RP-A694-06 19 38951199 38951199 G A RYR1 Missense_Mutation p.D849N 0.28 benign(0.19) TCGA-RP-A694-06 19 40098013 40098013 C T LGALS13 3'UTR 0.39 TCGA-RP-A694-06 19 40225094 40225094 C T CLC Missense_Mutation p.M44I 0.31 tolerated(0.16) benign(0.018) TCGA-RP-A694-06 19 41096727 41096727 C T SHKBP1 Silent p.L620L 0.28 TCGA-RP-A694-06 19 41096728 41096728 C T SHKBP1 Missense_Mutation p.P621S 0.27 tolerated_low_confidence(0.08) benign(0.033) TCGA-RP-A694-06 19 41518614 41518614 C T CYP2B6 Silent p.L396L 0.32 TCGA-RP-A694-06 19 43233375 43233375 G A PSG3 Silent p.I381I 0.20 TCGA-RP-A694-06 19 4333717 4333717 G A STAP2 Missense_Mutation p.L91F 0.23 deleterious(0) possibly_damaging(0.714) TCGA-RP-A694-06 19 43680079 43680079 C T PSG5 Missense_Mutation p.E218K 0.39 deleterious(0) probably_damaging(0.953) TCGA-RP-A694-06 19 43922545 43922545 C T TEX101 Missense_Mutation p.S267F 0.26 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-RP-A694-06 19 46195221 46195221 C T SNRPD2 5'UTR 0.30 TCGA-RP-A694-06 19 46281829 46281829 G A DMPK Missense_Mutation p.P178L 0.37 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 19 49166769 49166769 C T NTN5 Silent p.S352S 0.25 TCGA-RP-A694-06 19 49539516 49539516 T G CGB1 Silent p.A18A 0.29 TCGA-RP-A694-06 19 49999638 49999638 C T RPS11 5'UTR 0.31 TCGA-RP-A694-06 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.16 TCGA-RP-A694-06 19 50209489 50209489 G A CPT1C Missense_Mutation p.G388S 0.43 tolerated(0.67) benign(0.015) TCGA-RP-A694-06 19 50735304 50735304 G A MYH14 Missense_Mutation p.G364E 0.36 deleterious(0.02) possibly_damaging(0.499) TCGA-RP-A694-06 19 50775127 50775127 C T MYH14 Missense_Mutation p.R1065C 0.24 deleterious(0) probably_damaging(0.993) TCGA-RP-A694-06 19 51191210 51191210 G A SHANK1 Missense_Mutation p.P760S 0.25 benign(0.052) TCGA-RP-A694-06 19 51462354 51462354 G A KLK6 3'UTR 0.30 TCGA-RP-A694-06 19 51874997 51874997 G A NKG7 3'UTR 0.28 TCGA-RP-A694-06 19 51955670 51955670 C T SIGLEC8 Missense_Mutation p.R488K 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-RP-A694-06 19 51958704 51958704 G A SIGLEC8 Missense_Mutation p.S340F 0.31 deleterious(0.03) probably_damaging(0.926) TCGA-RP-A694-06 19 52447671 52447671 C T ZNF613 Missense_Mutation p.P179S 0.31 tolerated(0.19) benign(0.003) TCGA-RP-A694-06 19 52942228 52942228 G A ZNF534 Silent p.Q518Q 0.50 TCGA-RP-A694-06 19 54140039 54140039 C T DPRX Nonsense_Mutation p.R125* 0.27 TCGA-RP-A694-06 19 55085805 55085805 C T LILRA2 Silent p.G36G 0.22 TCGA-RP-A694-06 19 55112234 55112234 C T LILRA1 Silent p.V474V 0.35 TCGA-RP-A694-06 19 55112307 55112307 G A LILRA1 3'UTR 0.33 TCGA-RP-A694-06 19 55177374 55177374 G A LILRB4 Missense_Mutation p.R289K 0.27 tolerated(0.25) benign(0) TCGA-RP-A694-06 19 55221506 55221506 C T AC098784.2 3'Flank 0.18 TCGA-RP-A694-06 19 55363717 55363717 C T KIR3DL2 Missense_Mutation p.P112L 0.31 tolerated(0.12) possibly_damaging(0.882) TCGA-RP-A694-06 19 55494752 55494752 C T NLRP2 Silent p.N562N 0.27 TCGA-RP-A694-06 19 55877452 55877452 G T IL11 Missense_Mutation p.H175N 0.27 deleterious(0.04) probably_damaging(0.982) TCGA-RP-A694-06 19 56319327 56319327 A C NLRP11 Missense_Mutation p.M632R 0.38 tolerated(0.6) benign(0.002) TCGA-RP-A694-06 19 56373427 56373427 G A NLRP4 Silent p.L696L 0.35 TCGA-RP-A694-06 19 56465889 56465889 G A NLRP8 Silent p.S155S 0.33 TCGA-RP-A694-06 19 56691956 56691956 G A GALP Missense_Mutation p.G30E 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-RP-A694-06 19 56701928 56701928 C T ZSCAN5B Silent p.K252K 0.35 TCGA-RP-A694-06 19 57286724 57286724 G A ZIM2 Missense_Mutation p.P306S 0.33 tolerated(0.07) benign(0.241) TCGA-RP-A694-06 19 57326244 57326244 T G PEG3 Missense_Mutation p.Q1189P 0.06 tolerated(0.32) benign(0.016) TCGA-RP-A694-06 19 57328009 57328009 C T PEG3 Missense_Mutation p.E601K 0.38 tolerated(0.52) possibly_damaging(0.681) TCGA-RP-A694-06 19 57648316 57648316 C T ZIM3 Missense_Mutation p.D56N 0.30 tolerated(0.09) benign(0.001) TCGA-RP-A694-06 19 58420903 58420903 G A ZNF417 Missense_Mutation p.S248F 0.29 tolerated(0.13) benign(0.334) TCGA-RP-A694-06 19 6534791 6534791 C T TNFSF9 Missense_Mutation p.S160F 0.70 tolerated(0.24) possibly_damaging(0.772) TCGA-RP-A694-06 19 8610589 8610589 G A MYO1F Missense_Mutation p.T434I 0.33 deleterious(0.01) benign(0.12) TCGA-RP-A694-06 19 8808018 8808018 G A ACTL9 Missense_Mutation p.S345L 0.15 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 19 9047904 9047904 C T MUC16 Missense_Mutation p.G11243R 0.20 possibly_damaging(0.844) TCGA-RP-A694-06 19 9075170 9075170 G A MUC16 Silent p.I4092I 0.29 TCGA-RP-A694-06 19 9077594 9077594 G A MUC16 Silent p.S3284S 0.28 TCGA-RP-A694-06 19 9083160 9083160 G A MUC16 Silent p.I2885I 0.25 TCGA-RP-A694-06 19 9085017 9085017 G A MUC16 Silent p.F2266F 0.41 TCGA-RP-A694-06 19 9088834 9088834 G A MUC16 Missense_Mutation p.A994V 0.26 unknown(0) TCGA-RP-A694-06 1 110740721 110740721 C T SLC6A17 Silent p.F613F 0.57 TCGA-RP-A694-06 1 114394648 114394648 C T PTPN22 Splice_Site p.X276_splice 0.29 TCGA-RP-A694-06 1 114414213 114414213 C T PTPN22 Silent p.L11L 0.56 TCGA-RP-A694-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.58 deleterious(0.01) benign(0.045) TCGA-RP-A694-06 1 117635465 117635465 C T TTF2 Missense_Mutation p.S973F 0.55 tolerated(0.61) benign(0.021) TCGA-RP-A694-06 1 119427830 119427830 G A TBX15 Missense_Mutation p.S339F 0.57 deleterious(0.04) benign(0.166) TCGA-RP-A694-06 1 144856917 144856917 G A PDE4DIP Silent p.L2190L 0.17 TCGA-RP-A694-06 1 144873915 144873915 G A PDE4DIP Missense_Mutation p.P1681L 0.24 tolerated(0.06) probably_damaging(0.944) TCGA-RP-A694-06 1 147231015 147231015 G A GJA5 Missense_Mutation p.A111V 0.46 tolerated(0.16) benign(0.018) TCGA-RP-A694-06 1 150975198 150975198 G A FAM63A Intron 0.42 TCGA-RP-A694-06 1 151288047 151288047 A G PI4KB Splice_Site p.X315_splice 0.49 TCGA-RP-A694-06 1 151774002 151774002 C A LINGO4 Silent p.G393G 0.55 TCGA-RP-A694-06 1 152058873 152058873 G A TCHHL1 Missense_Mutation p.L429F 0.21 tolerated(0.2) benign(0.023) TCGA-RP-A694-06 1 152277454 152277454 C T FLG Missense_Mutation p.G3303E 0.44 unknown(0) TCGA-RP-A694-06 1 152538544 152538544 G A LCE3E Silent p.S47S 0.18 TCGA-RP-A694-06 1 152552099 152552099 C T LCE3D 3'UTR 0.43 TCGA-RP-A694-06 1 152732646 152732646 G A KPRP Silent p.Q194Q 0.47 TCGA-RP-A694-06 1 153065983 153065983 C T SPRR2E 3'UTR 0.25 TCGA-RP-A694-06 1 153431448 153431448 G A S100A7 Silent p.I14I 0.44 TCGA-RP-A694-06 1 153727185 153727185 G T INTS3 Missense_Mutation p.M309I 0.47 tolerated(0.1) benign(0.167) TCGA-RP-A694-06 1 156697217 156697217 G A ISG20L2 Silent p.F76F 0.16 TCGA-RP-A694-06 1 156777075 156777075 G A SH2D2A Silent p.P365P 0.55 TCGA-RP-A694-06 1 157648350 157648350 G A FCRL3 3'UTR 0.71 TCGA-RP-A694-06 1 157648351 157648351 G A FCRL3 3'UTR 0.71 TCGA-RP-A694-06 1 158517071 158517071 G A OR6Y1 Silent p.S275S 0.18 TCGA-RP-A694-06 1 158596788 158596788 C T SPTA1 Missense_Mutation p.E1892K 0.39 tolerated(0.41) possibly_damaging(0.744) TCGA-RP-A694-06 1 158913629 158913629 G A PYHIN1 Missense_Mutation p.G351E 0.48 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 1 159284312 159284312 G A OR10J3 Silent p.I46I 0.22 TCGA-RP-A694-06 1 159907540 159907540 G A IGSF9 Silent p.F112F 0.41 TCGA-RP-A694-06 1 160846563 160846563 T A ITLN1 Missense_Mutation p.Q278L 0.50 tolerated(0.67) benign(0) TCGA-RP-A694-06 1 163044301 163044301 G A RGS4 Missense_Mutation p.G287E 0.44 tolerated_low_confidence(0.07) benign(0.045) TCGA-RP-A694-06 1 163309173 163309173 C T NUF2 Missense_Mutation p.S171F 0.42 deleterious(0) possibly_damaging(0.736) TCGA-RP-A694-06 1 164789377 164789377 G A PBX1 Missense_Mutation p.D356N 0.23 deleterious(0.04) possibly_damaging(0.52) TCGA-RP-A694-06 1 166905848 166905848 G A ILDR2 Missense_Mutation p.S228F 0.23 deleterious(0) probably_damaging(0.922) TCGA-RP-A694-06 1 166974561 166974561 C T MAEL Missense_Mutation p.L258F 0.40 tolerated(0.2) benign(0.436) TCGA-RP-A694-06 1 166991077 166991077 C T MAEL Silent p.F430F 0.26 TCGA-RP-A694-06 1 169670783 169670783 G A SELL Silent p.P346P 0.56 TCGA-RP-A694-06 1 169676541 169676541 G A SELL Silent p.I187I 0.35 TCGA-RP-A694-06 1 170695514 170695514 C T PRRX1 Missense_Mutation p.L191F 0.26 deleterious(0.02) benign(0.001) TCGA-RP-A694-06 1 171303792 171303792 C T FMO4 Missense_Mutation p.P357L 0.22 deleterious(0.02) probably_damaging(1) TCGA-RP-A694-06 1 175116112 175116112 T C TNN Missense_Mutation p.Y1269H 0.28 deleterious(0) benign(0.119) TCGA-RP-A694-06 1 176668693 176668693 G A PAPPA2 Silent p.V1068V 0.20 TCGA-RP-A694-06 1 179631287 179631287 G A TDRD5 Missense_Mutation p.D791N 0.46 deleterious(0.04) possibly_damaging(0.697) TCGA-RP-A694-06 1 180165587 180165587 G A QSOX1 Silent p.R553R 0.41 TCGA-RP-A694-06 1 180166058 180166058 C T QSOX1 Silent p.I710I 0.19 TCGA-RP-A694-06 1 181750591 181750591 G A CACNA1E Missense_Mutation p.E1766K 0.35 tolerated(0.14) benign(0) TCGA-RP-A694-06 1 186106021 186106021 C T HMCN1 Nonsense_Mutation p.R4512* 0.41 TCGA-RP-A694-06 1 190067040 190067040 G A BRINP3 3'UTR 0.31 TCGA-RP-A694-06 1 190067595 190067595 C T BRINP3 Nonsense_Mutation p.W618* 0.44 TCGA-RP-A694-06 1 192335244 192335244 C T RGS21 Missense_Mutation p.P150L 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-RP-A694-06 1 196254848 196254848 C T KCNT2 Missense_Mutation p.R879Q 0.32 deleterious(0) benign(0.275) TCGA-RP-A694-06 1 196965309 196965309 G A CFHR5 Nonsense_Mutation p.W316* 0.33 TCGA-RP-A694-06 1 200818673 200818673 C T CAMSAP2 Missense_Mutation p.P926S 0.57 deleterious(0.01) probably_damaging(1) TCGA-RP-A694-06 1 205308453 205308453 G A KLHDC8A Missense_Mutation p.P209L 0.51 deleterious(0) possibly_damaging(0.893) TCGA-RP-A694-06 1 211093303 211093303 G A KCNH1 Silent p.L381L 0.24 TCGA-RP-A694-06 1 213134570 213134570 G A VASH2 Silent p.A113A 0.23 TCGA-RP-A694-06 1 216680237 216680237 C T ESRRG 3'UTR 0.21 TCGA-RP-A694-06 1 22202223 22202223 G A HSPG2 Silent p.P1067P 0.62 TCGA-RP-A694-06 1 222712034 222712034 G A HHIPL2 Silent p.S511S 0.37 TCGA-RP-A694-06 1 223396816 223396816 C T SUSD4 Missense_Mutation p.D407N 0.44 deleterious(0.01) benign(0.253) TCGA-RP-A694-06 1 228333218 228333218 C T GUK1 Missense_Mutation p.S23L 0.14 deleterious(0.01) benign(0.174) TCGA-RP-A694-06 1 229737842 229737842 G A TAF5L Intron 0.31 TCGA-RP-A694-06 1 230841696 230841696 C T AGT Missense_Mutation p.M369I 0.43 tolerated(0.25) benign(0.005) TCGA-RP-A694-06 1 230846195 230846195 G A AGT Silent p.L134L 0.24 TCGA-RP-A694-06 1 233393932 233393932 G A PCNXL2 Missense_Mutation p.S559F 0.52 deleterious(0) probably_damaging(0.984) TCGA-RP-A694-06 1 233394323 233394323 G A PCNXL2 Missense_Mutation p.P429S 0.47 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-RP-A694-06 1 233512192 233512192 G A MLK4 Missense_Mutation p.D615N 0.27 deleterious(0) probably_damaging(0.977) TCGA-RP-A694-06 1 238048738 238048738 G A ZP4 Silent p.P371P 0.46 TCGA-RP-A694-06 1 240370718 240370718 C T FMN2 Missense_Mutation p.S869F 0.51 unknown(0) TCGA-RP-A694-06 1 242253120 242253120 G A PLD5 3'UTR 0.13 TCGA-RP-A694-06 1 247582374 247582374 A G NLRP3 Missense_Mutation p.K93R 0.34 tolerated(0.13) benign(0.003) TCGA-RP-A694-06 1 247902500 247902500 G A OR14K1 Missense_Mutation p.S195N 0.47 tolerated(0.71) benign(0.006) TCGA-RP-A694-06 1 248458252 248458252 G A OR2T12 Missense_Mutation p.S210F 0.14 deleterious(0.03) benign(0.232) TCGA-RP-A694-06 1 248617030 248617030 C T OR2T2 Missense_Mutation p.S311F 0.23 tolerated(0.14) benign(0.001) TCGA-RP-A694-06 1 27706395 27706395 G A CD164L2 3'UTR 0.61 TCGA-RP-A694-06 1 33241626 33241626 C T YARS Missense_Mutation p.G515S 0.64 deleterious_low_confidence(0.01) benign(0.416) TCGA-RP-A694-06 1 34554649 34554649 A T CSMD2 Missense_Mutation p.F71L 0.56 tolerated(0.17) benign(0.282) TCGA-RP-A694-06 1 3566510 3566510 C T WRAP73 Silent p.P18P 0.22 TCGA-RP-A694-06 1 36385145 36385145 C T AGO1 Silent p.P837P 0.62 TCGA-RP-A694-06 1 36552345 36552345 C T TEKT2 Missense_Mutation p.R177W 0.67 deleterious(0.01) probably_damaging(0.978) TCGA-RP-A694-06 1 44459631 44459631 C T CCDC24 Silent p.H164H 0.53 TCGA-RP-A694-06 1 44459632 44459632 C T CCDC24 Silent p.L165L 0.53 TCGA-RP-A694-06 1 47533301 47533301 C T CYP4Z1 Missense_Mutation p.P47S 0.55 deleterious(0.02) probably_damaging(0.96) TCGA-RP-A694-06 1 55063034 55063034 C T ACOT11 Missense_Mutation p.T237I 0.62 deleterious(0.04) possibly_damaging(0.624) TCGA-RP-A694-06 1 55119419 55119419 G A MROH7 Missense_Mutation p.E274K 0.67 deleterious_low_confidence(0.04) benign(0.024) TCGA-RP-A694-06 1 70701204 70701204 G T SRSF11 Missense_Mutation p.L187F 0.62 tolerated(0.07) unknown(0) TCGA-RP-A694-06 1 86524851 86524851 G A COL24A1 Missense_Mutation p.P587S 0.62 tolerated(0.06) probably_damaging(0.963) TCGA-RP-A694-06 1 86852605 86852605 G A ODF2L Missense_Mutation p.L36F 0.47 deleterious(0.05) possibly_damaging(0.894) TCGA-RP-A694-06 20 19496146 19496146 C T SLC24A3 Missense_Mutation p.P96S 0.24 deleterious(0) benign(0.164) TCGA-RP-A694-06 20 30898098 30898098 G A KIF3B Missense_Mutation p.G173E 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-RP-A694-06 20 3129049 3129049 G A FASTKD5 Missense_Mutation p.S223L 0.36 deleterious(0.03) benign(0.118) TCGA-RP-A694-06 20 31647190 31647190 G A BPIFB3 Silent p.K96K 0.46 TCGA-RP-A694-06 20 3215455 3215455 G A SLC4A11 Silent p.S101S 0.18 TCGA-RP-A694-06 20 3356928 3356928 G A C20orf194 Missense_Mutation p.S102L 0.21 tolerated(0.32) benign(0.033) TCGA-RP-A694-06 20 33680544 33680544 C T TRPC4AP Missense_Mutation p.R14Q 0.44 deleterious_low_confidence(0) unknown(0) TCGA-RP-A694-06 20 34292434 34292434 G A RBM39 Missense_Mutation p.A521V 0.30 deleterious(0) benign(0.134) TCGA-RP-A694-06 20 40713470 40713470 G A PTPRT Missense_Mutation p.R1330C 0.24 deleterious(0.01) possibly_damaging(0.765) TCGA-RP-A694-06 20 42344827 42344827 G A MYBL2 3'UTR 0.45 TCGA-RP-A694-06 20 43058294 43058294 G A HNF4A Missense_Mutation p.E472K 0.25 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-RP-A694-06 20 43851660 43851660 G A SEMG2 Missense_Mutation p.E463K 0.25 tolerated(0.05) possibly_damaging(0.621) TCGA-RP-A694-06 20 44596943 44596943 G A ZNF335 Silent p.I167I 0.29 TCGA-RP-A694-06 20 44670038 44670038 G A SLC12A5 Missense_Mutation p.G332R 0.27 tolerated(0.27) benign(0.296) TCGA-RP-A694-06 20 45221066 45221066 G A SLC13A3 Silent p.F299F 0.20 TCGA-RP-A694-06 20 48129663 48129663 G A PTGIS Missense_Mutation p.P387L 0.24 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 20 57828156 57828156 C T ZNF831 Missense_Mutation p.S1384L 0.29 deleterious(0.03) benign(0.005) TCGA-RP-A694-06 20 60926965 60926965 C T LAMA5 Silent p.R286R 0.44 TCGA-RP-A694-06 20 60926966 60926966 C T LAMA5 Missense_Mutation p.R286Q 0.40 probably_damaging(0.998) TCGA-RP-A694-06 20 9317805 9317805 C T PLCB4 Silent p.F39F 0.34 TCGA-RP-A694-06 20 9402034 9402034 G A PLCB4 Missense_Mutation p.E737K 0.25 tolerated(0.16) probably_damaging(0.999) TCGA-RP-A694-06 20 9404515 9404515 C T PLCB4 Nonsense_Mutation p.R802* 0.42 TCGA-RP-A694-06 20 9434109 9434109 G A PLCB4 Missense_Mutation p.G987E 0.24 tolerated(0.17) probably_damaging(0.971) TCGA-RP-A694-06 20 9440326 9440326 G A PLCB4 Missense_Mutation p.M1027I 0.38 tolerated(0.17) benign(0.041) TCGA-RP-A694-06 20 9496116 9496116 C T LAMP5 Silent p.I27I 0.25 TCGA-RP-A694-06 21 10862954 10862954 C T IGHV1OR21-1 Nonsense_Mutation p.Q84* 0.11 TCGA-RP-A694-06 21 10916422 10916422 G A TPTE Silent p.L408L 0.09 TCGA-RP-A694-06 21 31587712 31587712 C T CLDN8 Missense_Mutation p.G178R 0.41 deleterious(0) possibly_damaging(0.873) TCGA-RP-A694-06 21 38997594 38997594 G A KCNJ6 Missense_Mutation p.P380L 0.49 tolerated(0.3) benign(0.029) TCGA-RP-A694-06 21 43373499 43373499 C T C2CD2 Missense_Mutation p.E87K 0.53 tolerated(0.34) benign(0.042) TCGA-RP-A694-06 21 45518304 45518304 C T TRAPPC10 Missense_Mutation p.L1079F 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-RP-A694-06 22 21330979 21330979 C T AIFM3 Missense_Mutation p.S357F 0.47 deleterious(0) probably_damaging(0.99) TCGA-RP-A694-06 22 26747090 26747090 G A SEZ6L Missense_Mutation p.G827E 0.24 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 22 30127193 30127193 G A ZMAT5 3'UTR 0.30 TCGA-RP-A694-06 22 30952051 30952051 G A GAL3ST1 Missense_Mutation p.P54L 0.39 deleterious(0.04) benign(0.034) TCGA-RP-A694-06 22 31533832 31533832 C T PLA2G3 Silent p.K310K 0.35 TCGA-RP-A694-06 22 37334515 37334515 G A CSF2RB Missense_Mutation p.E889K 0.17 deleterious(0.01) possibly_damaging(0.451) TCGA-RP-A694-06 22 37578718 37578718 G A C1QTNF6 Missense_Mutation p.P116L 0.12 tolerated(0.16) benign(0.033) TCGA-RP-A694-06 22 37578782 37578782 G A C1QTNF6 Intron 0.14 TCGA-RP-A694-06 22 38016337 38016337 C T GGA1 Silent p.I132I 0.15 TCGA-RP-A694-06 22 39219262 39219262 G A NPTXR Silent p.A368A 0.23 TCGA-RP-A694-06 22 40814536 40814536 G A MKL1 Missense_Mutation p.P636S 0.25 tolerated(0.19) benign(0.09) TCGA-RP-A694-06 22 44067858 44067858 G A EFCAB6 Silent p.F545F 0.26 TCGA-RP-A694-06 22 46627766 46627766 C T PPARA Silent p.I263I 0.24 TCGA-RP-A694-06 2 102808507 102808507 G A IL1RL2 Missense_Mutation p.G139E 0.23 tolerated(0.06) possibly_damaging(0.78) TCGA-RP-A694-06 2 103124573 103124573 C T SLC9A4 Missense_Mutation p.R412W 0.35 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.14 tolerated(0.11) benign(0.012) TCGA-RP-A694-06 2 11053560 11053560 C T KCNF1 Silent p.F336F 0.28 TCGA-RP-A694-06 2 113342135 113342135 C A CHCHD5 5'UTR 0.32 TCGA-RP-A694-06 2 113785692 113785692 C T IL36B Intron 0.20 TCGA-RP-A694-06 2 113816990 113816990 G A IL36RN Intron 0.30 TCGA-RP-A694-06 2 113887150 113887150 C T IL1RN Intron 0.24 TCGA-RP-A694-06 2 11716476 11716476 C T GREB1 Intron 0.26 TCGA-RP-A694-06 2 122216474 122216474 G A CLASP1 Missense_Mutation p.P419L 0.25 deleterious(0) possibly_damaging(0.69) TCGA-RP-A694-06 2 128393882 128393882 G A MYO7B Missense_Mutation p.A2010T 0.26 tolerated(0.06) probably_damaging(1) TCGA-RP-A694-06 2 130833113 130833113 G A POTEF Silent p.I644I 0.24 TCGA-RP-A694-06 2 131520820 131520820 C T AMER3 Missense_Mutation p.S392L 0.31 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 2 136872604 136872604 G A CXCR4 Silent p.N302N 0.29 TCGA-RP-A694-06 2 137990556 137990556 C T THSD7B Missense_Mutation p.S668L 0.31 deleterious(0.04) possibly_damaging(0.776) TCGA-RP-A694-06 2 141294208 141294208 G A LRP1B Silent p.L2528L 0.30 TCGA-RP-A694-06 2 141812742 141812742 G A LRP1B Missense_Mutation p.R499W 0.28 possibly_damaging(0.689) TCGA-RP-A694-06 2 152550884 152550884 C T NEB Missense_Mutation p.D617N 0.29 probably_damaging(0.997) TCGA-RP-A694-06 2 155102440 155102440 C T GALNT13 Missense_Mutation p.P268S 0.38 tolerated(0.23) benign(0.079) TCGA-RP-A694-06 2 155265550 155265550 G A GALNT13 Missense_Mutation p.E451K 0.35 tolerated(0.57) benign(0.027) TCGA-RP-A694-06 2 155711531 155711531 G A KCNJ3 Silent p.Q404Q 0.30 TCGA-RP-A694-06 2 160840491 160840491 G A PLA2R1 Missense_Mutation p.H711Y 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-RP-A694-06 2 166246306 166246306 G A SCN2A Missense_Mutation p.G1997E 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.856) TCGA-RP-A694-06 2 167056229 167056229 G A SCN9A Silent p.S1629S 0.24 TCGA-RP-A694-06 2 16734196 16734196 G A FAM49A 3'UTR 0.25 TCGA-RP-A694-06 2 179474255 179474255 C T TTN Missense_Mutation p.R17261Q 0.25 TCGA-RP-A694-06 2 179588771 179588771 G A TTN Missense_Mutation p.P7072L 0.31 TCGA-RP-A694-06 2 179599205 179599205 G A TTN Nonsense_Mutation p.R5116* 0.32 TCGA-RP-A694-06 2 179616567 179616567 C A TTN Intron 0.20 TCGA-RP-A694-06 2 179640343 179640343 C T TTN Missense_Mutation p.R2083K 0.31 TCGA-RP-A694-06 2 179654209 179654209 C T TTN Missense_Mutation p.E652K 0.20 TCGA-RP-A694-06 2 179702013 179702013 G A CCDC141 Silent p.A1311A 0.17 TCGA-RP-A694-06 2 182360139 182360139 C T ITGA4 Silent p.L461L 0.18 TCGA-RP-A694-06 2 182414389 182414389 C T CERKL Silent p.V315V 0.29 TCGA-RP-A694-06 2 182543523 182543523 C T NEUROD1 Nonsense_Mutation p.W22* 0.26 TCGA-RP-A694-06 2 185801254 185801254 G C ZNF804A Missense_Mutation p.E377D 0.22 deleterious(0.01) benign(0.133) TCGA-RP-A694-06 2 185801362 185801362 G A ZNF804A Silent p.K413K 0.38 TCGA-RP-A694-06 2 1893250 1893250 C T MYT1L Splice_Site p.X760_splice 0.29 TCGA-RP-A694-06 2 192700954 192700954 G A SDPR Missense_Mutation p.P325S 0.38 tolerated(0.63) benign(0.004) TCGA-RP-A694-06 2 201467062 201467062 C T AOX1 Silent p.F164F 0.36 TCGA-RP-A694-06 2 206023565 206023565 C T PARD3B Intron 0.30 TCGA-RP-A694-06 2 206165448 206165448 G A PARD3B Missense_Mutation p.E732K 0.31 deleterious(0.02) possibly_damaging(0.828) TCGA-RP-A694-06 2 215914376 215914376 G A ABCA12 Nonsense_Mutation p.Q223* 0.22 TCGA-RP-A694-06 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.35 deleterious(0) probably_damaging(0.954) TCGA-RP-A694-06 2 220338615 220338615 G A SPEG Silent p.L1479L 0.15 TCGA-RP-A694-06 2 226447409 226447409 C T NYAP2 Missense_Mutation p.P426S 0.26 tolerated(0.61) probably_damaging(0.999) TCGA-RP-A694-06 2 228884786 228884786 C T SPHKAP Missense_Mutation p.E262K 0.28 tolerated(0.35) benign(0.019) TCGA-RP-A694-06 2 229890345 229890345 C T PID1 3'UTR 0.24 TCGA-RP-A694-06 2 233245367 233245367 C T ALPP Silent p.I300I 0.36 TCGA-RP-A694-06 2 234344552 234344552 C T DGKD Silent p.I225I 0.28 TCGA-RP-A694-06 2 234627728 234627728 G A UGT1A4 Missense_Mutation p.E88K 0.19 tolerated(0.07) benign(0.044) TCGA-RP-A694-06 2 242011030 242011030 G A SNED1 Missense_Mutation p.G1210E 0.27 deleterious(0) possibly_damaging(0.703) TCGA-RP-A694-06 2 27802366 27802366 G A C2orf16 Missense_Mutation p.R976K 0.28 tolerated(0.33) benign(0.262) TCGA-RP-A694-06 2 31154956 31154956 C T GALNT14 Missense_Mutation p.G351R 0.28 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 2 42836680 42836680 C G MTA3 Silent p.L91L 0.30 TCGA-RP-A694-06 2 48809494 48809494 C T STON1-GTF2A1L Silent p.V574V 0.30 TCGA-RP-A694-06 2 48896891 48896891 C T STON1-GTF2A1L Missense_Mutation p.R1041W 0.38 deleterious(0) benign(0.05) TCGA-RP-A694-06 2 50149125 50149125 G A NRXN1 Missense_Mutation p.S1534F 0.37 tolerated(0.13) benign(0.347) TCGA-RP-A694-06 2 53927521 53927521 G A ASB3 Silent p.N410N 0.23 TCGA-RP-A694-06 2 54753598 54753598 C T SPTBN1 Nonsense_Mutation p.Q15* 0.29 TCGA-RP-A694-06 2 65571879 65571879 G A SPRED2 Missense_Mutation p.H60Y 0.35 tolerated(0.37) possibly_damaging(0.698) TCGA-RP-A694-06 2 73676891 73676891 C T ALMS1 Silent p.F1078F 0.28 TCGA-RP-A694-06 2 74867422 74867422 G C M1AP 5'UTR 0.32 TCGA-RP-A694-06 2 89513063 89513063 G A IGKV1-27 Missense_Mutation p.P66S 0.30 deleterious(0.01) possibly_damaging(0.886) TCGA-RP-A694-06 2 90121894 90121894 G A IGKV1D-17 Missense_Mutation p.G38R 0.27 deleterious(0.03) possibly_damaging(0.632) TCGA-RP-A694-06 2 95481623 95481623 T A ANKRD20A8P RNA 0.19 TCGA-RP-A694-06 2 98846596 98846596 C T VWA3B Missense_Mutation p.S745L 0.21 tolerated(0.22) benign(0.005) TCGA-RP-A694-06 2 99448892 99448892 C T KIAA1211L Missense_Mutation p.M153I 0.33 deleterious(0.05) benign(0.043) TCGA-RP-A694-06 3 108175612 108175612 C T MYH15 Splice_Site p.X733_splice 0.25 TCGA-RP-A694-06 3 111730611 111730611 G A TAGLN3 Silent p.G119G 0.38 TCGA-RP-A694-06 3 111887741 111887741 G A SLC9C1 Missense_Mutation p.P1074S 0.15 deleterious(0.05) possibly_damaging(0.798) TCGA-RP-A694-06 3 119426292 119426292 C T MAATS1 Silent p.I81I 0.23 TCGA-RP-A694-06 3 119426293 119426293 C T MAATS1 Missense_Mutation p.H82Y 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-RP-A694-06 3 119426349 119426349 C T MAATS1 Silent p.I100I 0.36 TCGA-RP-A694-06 3 120760584 120760584 G A STXBP5L Missense_Mutation p.E109K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-RP-A694-06 3 121976060 121976060 G A CASR Silent p.K106K 0.37 TCGA-RP-A694-06 3 122003771 122003771 G A CASR Silent p.R1000R 0.34 TCGA-RP-A694-06 3 122335903 122335903 G A PARP15 Missense_Mutation p.E298K 0.22 tolerated(0.13) benign(0.39) TCGA-RP-A694-06 3 122350982 122350982 G A PARP15 Missense_Mutation p.M496I 0.33 tolerated(0.26) benign(0) TCGA-RP-A694-06 3 122354837 122354837 C T PARP15 Missense_Mutation p.P643S 0.27 tolerated(0.29) benign(0.013) TCGA-RP-A694-06 3 124044831 124044831 C T KALRN Missense_Mutation p.A364V 0.25 tolerated(1) benign(0.01) TCGA-RP-A694-06 3 131624213 131624213 T G CPNE4 Missense_Mutation p.K25N 0.30 deleterious(0) probably_damaging(0.987) TCGA-RP-A694-06 3 13663297 13663297 T G FBLN2 Silent p.G726G 0.25 TCGA-RP-A694-06 3 139062813 139062813 G A MRPS22 5'UTR 0.35 TCGA-RP-A694-06 3 139346556 139346556 C T NMNAT3 5'UTR 0.33 TCGA-RP-A694-06 3 140997202 140997202 C T ACPL2 Missense_Mutation p.S33L 0.30 tolerated_low_confidence(0.16) benign(0.002) TCGA-RP-A694-06 3 142186843 142186843 G A ATR Missense_Mutation p.S2207F 0.21 deleterious(0.01) possibly_damaging(0.728) TCGA-RP-A694-06 3 148583291 148583291 G A CPA3 Missense_Mutation p.E34K 0.28 deleterious(0.03) possibly_damaging(0.708) TCGA-RP-A694-06 3 151176424 151176424 C T IGSF10 Missense_Mutation p.G25E 0.27 tolerated(0.09) possibly_damaging(0.536) TCGA-RP-A694-06 3 151176425 151176425 C T IGSF10 Missense_Mutation p.G25R 0.25 tolerated(0.34) benign(0.036) TCGA-RP-A694-06 3 152553562 152553562 G A P2RY1 5'UTR 0.38 TCGA-RP-A694-06 3 154018391 154018391 C T DHX36 Missense_Mutation p.E485K 0.36 tolerated(0.72) benign(0.001) TCGA-RP-A694-06 3 154139205 154139205 C T GPR149 Missense_Mutation p.D416N 0.27 tolerated(1) benign(0.008) TCGA-RP-A694-06 3 158525197 158525197 C T MFSD1 Silent p.L178L 0.20 TCGA-RP-A694-06 3 166958481 166958481 C T ZBBX 3'UTR 0.18 TCGA-RP-A694-06 3 169539796 169539796 C T LRRIQ4 Silent p.F29F 0.24 TCGA-RP-A694-06 3 169572722 169572722 G A LRRC31 Silent p.S290S 0.19 TCGA-RP-A694-06 3 17053495 17053495 G A PLCL2 Missense_Mutation p.G760E 0.33 deleterious(0) probably_damaging(0.988) TCGA-RP-A694-06 3 170846538 170846538 G A TNIK Nonsense_Mutation p.R580* 0.34 TCGA-RP-A694-06 3 172165900 172165900 G A GHSR Missense_Mutation p.R102C 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-RP-A694-06 3 180366104 180366104 T C CCDC39 Missense_Mutation p.K404R 0.34 tolerated(0.23) benign(0.174) TCGA-RP-A694-06 3 184045168 184045168 C T EIF4G1 Missense_Mutation p.P1205L 0.28 tolerated(0.32) benign(0.017) TCGA-RP-A694-06 3 184090868 184090868 A T THPO Silent p.L165L 0.45 TCGA-RP-A694-06 3 184100834 184100834 C T CHRD Silent p.L366L 0.28 TCGA-RP-A694-06 3 184100938 184100938 G A CHRD Silent p.R400R 0.36 TCGA-RP-A694-06 3 184429168 184429181 TGTTGATCAGGATG - MAGEF1 Nonsense_Mutation p.Y143* 0.20 TCGA-RP-A694-06 3 185229341 185229341 C T LIPH Missense_Mutation p.M413I 0.23 tolerated(0.49) benign(0.002) TCGA-RP-A694-06 3 189455579 189455579 C T TP63 Missense_Mutation p.S38F 0.19 deleterious_low_confidence(0.01) benign(0.445) TCGA-RP-A694-06 3 189455580 189455580 C A TP63 Silent p.S38S 0.19 TCGA-RP-A694-06 3 189692443 189692443 G A LEPREL1 Silent p.F452F 0.36 TCGA-RP-A694-06 3 191888285 191888285 G A FGF12 Missense_Mutation p.T192I 0.33 deleterious(0.02) benign(0.384) TCGA-RP-A694-06 3 194080728 194080728 G A LRRC15 Missense_Mutation p.H355Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-RP-A694-06 3 21792505 21792505 G A ZNF385D 5'UTR 0.47 TCGA-RP-A694-06 3 26751350 26751350 C T LRRC3B Missense_Mutation p.P63S 0.26 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 3 28562496 28562496 G A ZCWPW2 Silent p.T266T 0.30 TCGA-RP-A694-06 3 383722 383722 G A CHL1 Silent p.R212R 0.38 TCGA-RP-A694-06 3 38592078 38592078 G A SCN5A Missense_Mutation p.R1929C 0.37 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 3 39307590 39307590 G A CX3CR1 Silent p.S169S 0.24 TCGA-RP-A694-06 3 45823708 45823708 G A SLC6A20 Silent p.F43F 0.20 TCGA-RP-A694-06 3 47912473 47912473 G A MAP4 Missense_Mutation p.R897W 0.37 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 3 48419954 48419954 C T FBXW12 Missense_Mutation p.P185S 0.16 tolerated(0.56) benign(0.004) TCGA-RP-A694-06 3 52721400 52721400 G T GNL3 Splice_Site p.X70_splice 0.32 TCGA-RP-A694-06 3 52842593 52842593 G A ITIH3 Missense_Mutation p.D857N 0.29 deleterious(0.04) benign(0.344) TCGA-RP-A694-06 3 54604068 54604068 G A CACNA2D3 Silent p.A275A 0.33 TCGA-RP-A694-06 3 56044518 56044518 C T ERC2 Missense_Mutation p.E627K 0.31 deleterious(0.05) benign(0.309) TCGA-RP-A694-06 3 58792147 58792147 C T C3orf67 Missense_Mutation p.M486I 0.33 deleterious(0) possibly_damaging(0.71) TCGA-RP-A694-06 3 62355784 62355784 C T FEZF2 Missense_Mutation p.D452N 0.32 tolerated(0.1) benign(0.074) TCGA-RP-A694-06 3 77684045 77684045 G A ROBO2 Missense_Mutation p.R1278K 0.25 tolerated(0.15) benign(0.067) TCGA-RP-A694-06 3 89259167 89259167 G A EPHA3 Missense_Mutation p.R104Q 0.27 deleterious(0) probably_damaging(0.99) TCGA-RP-A694-06 3 89498444 89498444 G A EPHA3 Missense_Mutation p.D806N 0.29 deleterious(0) possibly_damaging(0.869) TCGA-RP-A694-06 3 97868450 97868450 C T OR5H14 Missense_Mutation p.S74L 0.26 deleterious(0) probably_damaging(0.988) TCGA-RP-A694-06 3 97888090 97888090 C T OR5H15 Missense_Mutation p.P183S 0.33 deleterious(0.04) possibly_damaging(0.764) TCGA-RP-A694-06 3 98002376 98002376 C T OR5H2 Silent p.T215T 0.32 TCGA-RP-A694-06 4 100266221 100266221 C T ADH1C Missense_Mutation p.G122E 0.17 probably_damaging(0.975) TCGA-RP-A694-06 4 110866390 110866390 C T EGF Missense_Mutation p.P300L 0.37 deleterious(0.02) benign(0.216) TCGA-RP-A694-06 4 114195792 114195792 C T ANK2 Missense_Mutation p.S557F 0.27 probably_damaging(0.995) TCGA-RP-A694-06 4 115791956 115791956 G T NDST4 Missense_Mutation p.L563I 0.25 tolerated(0.45) benign(0.159) TCGA-RP-A694-06 4 115997869 115997869 C T NDST4 Missense_Mutation p.M108I 0.26 tolerated(0.49) benign(0.001) TCGA-RP-A694-06 4 121774692 121774692 G A PRDM5 Missense_Mutation p.R61C 0.26 deleterious(0.04) benign(0.04) TCGA-RP-A694-06 4 126370885 126370885 G A FAT4 Missense_Mutation p.G2905E 0.25 probably_damaging(0.999) TCGA-RP-A694-06 4 152204388 152204388 G A PRSS48 Missense_Mutation p.E201K 0.36 tolerated(0.08) possibly_damaging(0.562) TCGA-RP-A694-06 4 155505404 155505404 C T FGA Missense_Mutation p.G825S 0.38 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 4 156726369 156726369 T C GUCY1B3 Silent p.N608N 0.35 TCGA-RP-A694-06 4 164247357 164247357 G A NPY1R Missense_Mutation p.P117L 0.30 deleterious(0) possibly_damaging(0.665) TCGA-RP-A694-06 4 166263024 166263024 C T MSMO1 Nonsense_Mutation p.R270* 0.25 TCGA-RP-A694-06 4 175897917 175897917 G A ADAM29 Missense_Mutation p.G414E 0.17 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 4 183658118 183658118 G A TENM3 Missense_Mutation p.G1042E 0.22 deleterious(0) probably_damaging(0.972) TCGA-RP-A694-06 4 183721336 183721336 G A TENM3 Silent p.E2644E 0.33 TCGA-RP-A694-06 4 187003965 187003965 C T TLR3 Silent p.F375F 0.30 TCGA-RP-A694-06 4 187004366 187004366 C T TLR3 Missense_Mutation p.T509I 0.36 deleterious(0.02) probably_damaging(0.91) TCGA-RP-A694-06 4 189022318 189022318 G A TRIML2 Silent p.L74L 0.33 TCGA-RP-A694-06 4 23803473 23803473 T A PPARGC1A Missense_Mutation p.T725S 0.32 tolerated(0.89) unknown(0) TCGA-RP-A694-06 4 3495009 3495009 G A DOK7 Silent p.R432R 0.35 TCGA-RP-A694-06 4 38830672 38830672 T C TLR6 Silent p.E141E 0.42 TCGA-RP-A694-06 4 38945192 38945192 C T FAM114A1 3'UTR 0.27 TCGA-RP-A694-06 4 42964944 42964944 G A GRXCR1 Silent p.V140V 0.28 TCGA-RP-A694-06 4 44626678 44626678 A G YIPF7 Missense_Mutation p.L207P 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 4 46252589 46252589 G A GABRA2 Silent p.N364N 0.30 TCGA-RP-A694-06 4 46252590 46252590 T G GABRA2 Missense_Mutation p.N364T 0.32 tolerated(0.3) benign(0.034) TCGA-RP-A694-06 4 48069644 48069644 C T TXK 3'UTR 0.26 TCGA-RP-A694-06 4 48230567 48230567 G A TEC Missense_Mutation p.S22L 0.28 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 4 55968586 55968586 T A KDR Missense_Mutation p.N693Y 0.31 deleterious(0.02) possibly_damaging(0.74) TCGA-RP-A694-06 4 62903464 62903464 G A LPHN3 Missense_Mutation p.G1135R 0.25 tolerated(0.59) probably_damaging(0.939) TCGA-RP-A694-06 4 65274968 65274968 G A TECRL Silent p.H34H 0.21 TCGA-RP-A694-06 4 68925055 68925055 C T TMPRSS11F Missense_Mutation p.D383N 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 4 69681867 69681867 G A UGT2B10 Missense_Mutation p.E44K 0.27 deleterious(0.04) possibly_damaging(0.521) TCGA-RP-A694-06 4 70723360 70723360 C T SULT1E1 Translation_Start_Site p.M1? 0.27 tolerated(0.1) benign(0.403) TCGA-RP-A694-06 4 70823497 70823497 G A CSN2 Missense_Mutation p.P57L 0.31 deleterious(0.02) benign(0.023) TCGA-RP-A694-06 4 72897537 72897537 G A NPFFR2 5'UTR 0.23 TCGA-RP-A694-06 4 74005430 74005430 G A ANKRD17 Missense_Mutation p.P968L 0.16 benign(0.066) TCGA-RP-A694-06 4 74272379 74272379 G A ALB Silent p.Q57Q 0.20 TCGA-RP-A694-06 4 74283245 74283245 C T ALB Intron 0.21 TCGA-RP-A694-06 4 85642710 85642710 G A WDFY3 Missense_Mutation p.P2486L 0.15 deleterious(0.04) benign(0.186) TCGA-RP-A694-06 4 85642712 85642712 A T WDFY3 Silent p.P2485P 0.15 TCGA-RP-A694-06 4 88766516 88766516 G A MEPE Missense_Mutation p.E166K 0.36 tolerated(0.18) benign(0.217) TCGA-RP-A694-06 4 90170494 90170494 G A GPRIN3 Silent p.G256G 0.30 TCGA-RP-A694-06 4 90170693 90170693 G A GPRIN3 Missense_Mutation p.P190L 0.33 deleterious(0.04) benign(0.121) TCGA-RP-A694-06 4 94138140 94138140 G A GRID2 Intron 0.19 TCGA-RP-A694-06 5 102423724 102423724 G A GIN1 Missense_Mutation p.R483C 0.21 tolerated_low_confidence(0.18) benign(0.001) TCGA-RP-A694-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.31 TCGA-RP-A694-06 5 112770220 112770220 C T TSSK1B Missense_Mutation p.G106E 0.26 deleterious(0) probably_damaging(0.993) TCGA-RP-A694-06 5 115348085 115348085 G A AQPEP Silent p.K754K 0.11 TCGA-RP-A694-06 5 118728851 118728851 C T TNFAIP8 Silent p.D124D 0.31 TCGA-RP-A694-06 5 121786797 121786797 C T SNCAIP Missense_Mutation p.S752L 0.33 deleterious(0) probably_damaging(0.997) TCGA-RP-A694-06 5 1253899 1253899 G A TERT Silent p.L1115L 0.37 TCGA-RP-A694-06 5 13692061 13692061 C T DNAH5 3'UTR 0.35 TCGA-RP-A694-06 5 137588738 137588738 G A GFRA3 Silent p.N374N 0.23 TCGA-RP-A694-06 5 13820557 13820557 G A DNAH5 Nonsense_Mutation p.Q2247* 0.29 TCGA-RP-A694-06 5 13830235 13830235 G A DNAH5 Missense_Mutation p.S2050F 0.32 possibly_damaging(0.788) TCGA-RP-A694-06 5 13864560 13864560 A G DNAH5 Silent p.F1514F 0.38 TCGA-RP-A694-06 5 140209946 140209946 G A PCDHA6 Missense_Mutation p.R757K 0.28 tolerated_low_confidence(0.2) benign(0.064) TCGA-RP-A694-06 5 140215986 140215986 G A PCDHA7 Missense_Mutation p.G673D 0.24 deleterious_low_confidence(0.02) benign(0.117) TCGA-RP-A694-06 5 140474984 140474984 C T PCDHB2 Missense_Mutation p.R204C 0.26 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-RP-A694-06 5 140564391 140564391 G A PCDHB16 Missense_Mutation p.V753M 0.26 deleterious_low_confidence(0.01) benign(0.05) TCGA-RP-A694-06 5 140589520 140589520 C T PCDHB12 Silent p.I347I 0.25 TCGA-RP-A694-06 5 140720598 140720598 C T PCDHGA2 Missense_Mutation p.S687L 0.32 deleterious_low_confidence(0.01) benign(0.117) TCGA-RP-A694-06 5 140801496 140801496 C T PCDHGA11 Silent p.L234L 0.32 TCGA-RP-A694-06 5 147498055 147498055 G A SPINK5 Missense_Mutation p.R723Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-RP-A694-06 5 148207022 148207022 G A ADRB2 Missense_Mutation p.V210I 0.33 tolerated(1) benign(0.001) TCGA-RP-A694-06 5 148207023 148207023 T C ADRB2 Missense_Mutation p.V210A 0.34 deleterious(0.03) benign(0.087) TCGA-RP-A694-06 5 148617105 148617105 C T ABLIM3 Missense_Mutation p.S328F 0.31 deleterious(0) possibly_damaging(0.726) TCGA-RP-A694-06 5 150028349 150028349 C T SYNPO Missense_Mutation p.S415F 0.30 tolerated(0.08) benign(0.293) TCGA-RP-A694-06 5 150858926 150858926 C T SLC36A1 Silent p.F345F 0.29 TCGA-RP-A694-06 5 151784168 151784168 G A NMUR2 Silent p.I169I 0.30 TCGA-RP-A694-06 5 153190618 153190618 G A GRIA1 Missense_Mutation p.E862K 0.32 tolerated(0.19) benign(0.26) TCGA-RP-A694-06 5 156381695 156381695 G A TIMD4 Missense_Mutation p.S44F 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-RP-A694-06 5 156667190 156667190 C T ITK Nonsense_Mutation p.Q324* 0.31 TCGA-RP-A694-06 5 158267040 158267040 G A EBF1 Silent p.F211F 0.53 TCGA-RP-A694-06 5 15935299 15935299 C T FBXL7 Intron 0.32 TCGA-RP-A694-06 5 161520868 161520868 G A GABRG2 Missense_Mutation p.D48N 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A694-06 5 167630771 167630771 G A TENM2 Missense_Mutation p.E1170K 0.32 deleterious(0) probably_damaging(0.92) TCGA-RP-A694-06 5 168201342 168201342 G T SLIT3 Missense_Mutation p.T398K 0.32 deleterious(0.01) probably_damaging(0.976) TCGA-RP-A694-06 5 172590913 172590913 C T BNIP1 Missense_Mutation p.P269S 0.30 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-RP-A694-06 5 176023960 176023960 G A GPRIN1 Missense_Mutation p.P959L 0.46 deleterious(0.02) benign(0.169) TCGA-RP-A694-06 5 176700722 176700722 G A NSD1 Silent p.E1853E 0.26 TCGA-RP-A694-06 5 176885602 176885602 G A DBN1 Silent p.P413P 0.19 TCGA-RP-A694-06 5 178506063 178506063 C T ZNF354C Silent p.Y210Y 0.31 TCGA-RP-A694-06 5 178506064 178506064 C T ZNF354C Missense_Mutation p.P211S 0.28 tolerated(0.27) benign(0.054) TCGA-RP-A694-06 5 23527773 23527773 C T PRDM9 Missense_Mutation p.P859L 0.31 deleterious(0.02) probably_damaging(1) TCGA-RP-A694-06 5 26906869 26906869 A T CDH9 Missense_Mutation p.I201K 0.24 deleterious(0) probably_damaging(0.996) TCGA-RP-A694-06 5 354004 354004 C T AHRR Silent p.L78L 0.22 TCGA-RP-A694-06 5 36217967 36217967 T A NADK2 Missense_Mutation p.I222F 0.35 deleterious(0) probably_damaging(0.964) TCGA-RP-A694-06 5 36301557 36301557 G A RANBP3L 5'UTR 0.21 TCGA-RP-A694-06 5 36976468 36976468 G A NIPBL Missense_Mutation p.E487K 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.777) TCGA-RP-A694-06 5 37299012 37299012 G A NUP155 Missense_Mutation p.L1251F 0.23 deleterious(0) probably_damaging(0.998) TCGA-RP-A694-06 5 38403980 38403980 G A EGFLAM Intron 0.32 TCGA-RP-A694-06 5 38427168 38427168 C T EGFLAM Missense_Mutation p.P623L 0.28 tolerated(0.06) benign(0.111) TCGA-RP-A694-06 5 41057250 41057250 C T MROH2B Missense_Mutation p.E294K 0.43 tolerated(0.32) benign(0.052) TCGA-RP-A694-06 5 42801480 42801480 G A CCDC152 3'UTR 0.32 TCGA-RP-A694-06 5 66255090 66255090 G A MAST4 Intron 0.41 TCGA-RP-A694-06 5 76129393 76129393 C T F2RL1 Missense_Mutation p.H321Y 0.32 tolerated(0.3) benign(0.005) TCGA-RP-A694-06 5 78376564 78376564 G A BHMT2 Missense_Mutation p.G105S 0.30 tolerated(0.09) possibly_damaging(0.631) TCGA-RP-A694-06 5 79351610 79351610 A G THBS4 Missense_Mutation p.I99V 0.30 tolerated(1) benign(0.001) TCGA-RP-A694-06 5 79366551 79366551 G A THBS4 Missense_Mutation p.G513E 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 5 82940434 82940434 G A HAPLN1 Missense_Mutation p.H175Y 0.30 tolerated(0.35) benign(0.01) TCGA-RP-A694-06 5 88018554 88018554 G A MEF2C Missense_Mutation p.S440L 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-RP-A694-06 5 90073811 90073811 G A GPR98 Missense_Mutation p.G4206E 0.55 probably_damaging(0.972) TCGA-RP-A694-06 5 90151562 90151562 T C GPR98 Silent p.L5867L 0.31 TCGA-RP-A694-06 5 96315551 96315551 C T LNPEP Silent p.I243I 0.42 TCGA-RP-A694-06 6 100841405 100841405 C T SIM1 Missense_Mutation p.E510K 0.38 tolerated_low_confidence(0.07) benign(0.239) TCGA-RP-A694-06 6 101109875 101109875 G A ASCC3 Missense_Mutation p.S837F 0.36 deleterious(0) possibly_damaging(0.866) TCGA-RP-A694-06 6 10410363 10410363 G A TFAP2A Missense_Mutation p.P84L 0.25 deleterious(0) benign(0.092) TCGA-RP-A694-06 6 106968689 106968689 C T AIM1 Silent p.S794S 0.21 TCGA-RP-A694-06 6 111696776 111696776 C A REV3L Nonsense_Mutation p.E928* 0.34 TCGA-RP-A694-06 6 117127854 117127854 G A GPRC6A Silent p.S338S 0.25 TCGA-RP-A694-06 6 117631285 117631285 T A ROS1 Missense_Mutation p.E2131D 0.35 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 6 119623164 119623164 C T MAN1A1 Missense_Mutation p.D269N 0.33 tolerated(0.35) benign(0.013) TCGA-RP-A694-06 6 121768091 121768091 G A GJA1 Missense_Mutation p.R33Q 0.24 deleterious(0) probably_damaging(0.916) TCGA-RP-A694-06 6 123542639 123542639 C T TRDN Silent p.K681K 0.32 TCGA-RP-A694-06 6 131926539 131926539 G A MED23 Missense_Mutation p.S485L 0.18 tolerated(0.1) benign(0.371) TCGA-RP-A694-06 6 152708437 152708437 C T SYNE1 Missense_Mutation p.D2753N 0.31 benign(0.049) TCGA-RP-A694-06 6 15524624 15524624 G A DTNBP1 Intron 0.20 TCGA-RP-A694-06 6 25915984 25915984 C T SLC17A2 Missense_Mutation p.R348Q 0.24 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 6 26508766 26508766 C T BTN1A1 Silent p.H315H 0.41 TCGA-RP-A694-06 6 26508767 26508767 C T BTN1A1 Missense_Mutation p.L316F 0.40 deleterious(0.02) probably_damaging(1) TCGA-RP-A694-06 6 2783637 2783637 C T WRNIP1 Intron 0.26 TCGA-RP-A694-06 6 28542837 28542837 C T SCAND3 Missense_Mutation p.E549K 0.16 deleterious_low_confidence(0) benign(0.052) TCGA-RP-A694-06 6 29012221 29012221 A T OR2W1 Missense_Mutation p.H244Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 6 29054447 29054447 C T OR2B3 Silent p.K193K 0.47 TCGA-RP-A694-06 6 29054669 29054669 G A OR2B3 Silent p.S119S 0.18 TCGA-RP-A694-06 6 29430096 29430096 C T OR2H1 Nonsense_Mutation p.R184* 0.20 TCGA-RP-A694-06 6 32170021 32170021 C T NOTCH4 Missense_Mutation p.G1196E 0.24 tolerated(0.07) benign(0.303) TCGA-RP-A694-06 6 32180270 32180270 C T NOTCH4 Silent p.Q887Q 0.17 TCGA-RP-A694-06 6 32411032 32411032 C T HLA-DRA Silent p.F133F 0.18 TCGA-RP-A694-06 6 32629961 32629961 G A HLA-DQB1 Silent p.V148V 0.31 TCGA-RP-A694-06 6 33135091 33135091 G A COL11A2 Nonsense_Mutation p.Q1290* 0.19 TCGA-RP-A694-06 6 35423760 35423760 G A FANCE Missense_Mutation p.R162K 0.26 tolerated(0.16) benign(0.001) TCGA-RP-A694-06 6 35762822 35762822 G A CLPS 3'UTR 0.26 TCGA-RP-A694-06 6 35930377 35930377 G A SLC26A8 Silent p.L463L 0.21 TCGA-RP-A694-06 6 36294431 36294431 T C C6orf222 Missense_Mutation p.K298E 0.41 tolerated(0.63) possibly_damaging(0.486) TCGA-RP-A694-06 6 38749042 38749042 C T DNAH8 Nonsense_Mutation p.Q501* 0.12 TCGA-RP-A694-06 6 38790794 38790794 G T DNAH8 Missense_Mutation p.R1018L 0.24 benign(0.018) TCGA-RP-A694-06 6 38875853 38875853 C T DNAH8 Missense_Mutation p.S2940L 0.18 benign(0.283) TCGA-RP-A694-06 6 41129026 41129026 C T TREM2 Silent p.R122R 0.20 TCGA-RP-A694-06 6 41204355 41204355 G A TREML4 Intron 0.25 TCGA-RP-A694-06 6 41712540 41712540 G A PGC Silent p.P22P 0.22 TCGA-RP-A694-06 6 43275469 43275469 C T CRIP3 Missense_Mutation p.G70D 0.42 deleterious(0.01) probably_damaging(0.941) TCGA-RP-A694-06 6 43275470 43275470 C T CRIP3 Missense_Mutation p.G70S 0.42 deleterious(0.02) benign(0.37) TCGA-RP-A694-06 6 44250052 44250052 A C TCTE1 Missense_Mutation p.L364R 0.22 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 6 46806779 46806779 G A MEP1A Missense_Mutation p.G716D 0.42 tolerated(0.1) possibly_damaging(0.659) TCGA-RP-A694-06 6 53989377 53989377 G A MLIP Missense_Mutation p.R109K 0.23 tolerated(0.92) benign(0.009) TCGA-RP-A694-06 6 53989592 53989592 G A MLIP Missense_Mutation p.G181R 0.18 deleterious(0.04) possibly_damaging(0.803) TCGA-RP-A694-06 6 55620382 55620382 G A BMP5 Silent p.V438V 0.28 TCGA-RP-A694-06 6 56035908 56035908 C T COL21A1 Missense_Mutation p.R220Q 0.35 deleterious(0.02) benign(0.201) TCGA-RP-A694-06 6 63990777 63990777 G A LGSN Missense_Mutation p.P227S 0.31 tolerated(0.17) benign(0.009) TCGA-RP-A694-06 6 70098693 70098693 G A BAI3 Silent p.K1493K 0.22 TCGA-RP-A694-06 6 70852705 70852705 G A COL19A1 Missense_Mutation p.G540E 0.24 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 6 7301800 7301800 G A SSR1 Missense_Mutation p.P96S 0.18 deleterious(0.02) probably_damaging(0.934) TCGA-RP-A694-06 6 7883339 7883339 C T TXNDC5 3'UTR 0.06 TCGA-RP-A694-06 6 79787588 79787588 C T PHIP Missense_Mutation p.C28Y 0.25 deleterious(0.03) probably_damaging(0.962) TCGA-RP-A694-06 6 84270651 84270651 G A SNAP91 Missense_Mutation p.P820S 0.36 tolerated(0.07) probably_damaging(0.986) TCGA-RP-A694-06 6 84859352 84859352 G A KIAA1009 Missense_Mutation p.L1234F 0.27 deleterious(0) probably_damaging(0.988) TCGA-RP-A694-06 6 88255417 88255417 C A RARS2 Missense_Mutation p.G151V 0.25 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 6 90718362 90718362 C T BACH2 Missense_Mutation p.G68R 0.33 deleterious(0) probably_damaging(0.967) TCGA-RP-A694-06 7 100086605 100086605 G A NYAP1 Missense_Mutation p.E421K 0.19 deleterious(0.01) possibly_damaging(0.572) TCGA-RP-A694-06 7 100281204 100281204 G A GIGYF1 Missense_Mutation p.P674L 0.23 deleterious(0) unknown(0) TCGA-RP-A694-06 7 100389633 100389633 C T ZAN Silent p.L2524L 0.23 TCGA-RP-A694-06 7 102665596 102665596 G A FBXL13 Missense_Mutation p.P137S 0.33 tolerated(0.81) benign(0.002) TCGA-RP-A694-06 7 103202031 103202031 C T RELN Missense_Mutation p.G1826E 0.22 deleterious(0.01) probably_damaging(1) TCGA-RP-A694-06 7 103216014 103216014 G A RELN Silent p.F1428F 0.33 TCGA-RP-A694-06 7 103338482 103338482 C T RELN Missense_Mutation p.G321R 0.32 deleterious(0.03) probably_damaging(0.942) TCGA-RP-A694-06 7 111127313 111127313 C T IMMP2L Missense_Mutation p.G74S 0.26 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 7 117432737 117432737 G A CTTNBP2 Silent p.V171V 0.18 TCGA-RP-A694-06 7 126173840 126173840 G A GRM8 Silent p.V532V 0.26 TCGA-RP-A694-06 7 137304633 137304633 G A DGKI Silent p.S310S 0.25 TCGA-RP-A694-06 7 139092034 139092034 C T LUC7L2 Missense_Mutation p.H275Y 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 7 141727470 141727470 G A MGAM Missense_Mutation p.E386K 0.35 deleterious(0.02) benign(0.116) TCGA-RP-A694-06 7 142001149 142001149 G A TRBV2 Missense_Mutation p.D48N 0.31 TCGA-RP-A694-06 7 142168910 142168910 G A TRBV5-4 5'UTR 0.36 TCGA-RP-A694-06 7 143657684 143657684 G T OR2F1 Silent p.L207L 0.33 TCGA-RP-A694-06 7 143771475 143771475 C T OR2A25 Missense_Mutation p.H55Y 0.24 deleterious(0.01) possibly_damaging(0.811) TCGA-RP-A694-06 7 144060446 144060446 A C ARHGEF5 Missense_Mutation p.Q228H 0.13 tolerated(0.11) benign(0.015) TCGA-RP-A694-06 7 144060477 144060477 G A ARHGEF5 Missense_Mutation p.G239R 0.15 tolerated(0.18) benign(0.307) TCGA-RP-A694-06 7 147914478 147914478 C T CNTNAP2 Missense_Mutation p.P1037S 0.24 tolerated(0.24) benign(0) TCGA-RP-A694-06 7 149509678 149509678 G A SSPO RNA 0.34 TCGA-RP-A694-06 7 150488624 150488624 G A TMEM176B Silent p.L270L 0.12 TCGA-RP-A694-06 7 150692297 150692297 G A NOS3 Silent p.P55P 0.36 TCGA-RP-A694-06 7 158334270 158334270 A C PTPRN2 Intron 0.39 TCGA-RP-A694-06 7 19748469 19748469 G A TWISTNB Silent p.I57I 0.35 TCGA-RP-A694-06 7 19748471 19748471 T A TWISTNB Missense_Mutation p.I57F 0.35 deleterious(0) possibly_damaging(0.829) TCGA-RP-A694-06 7 20199320 20199320 C T MACC1 Missense_Mutation p.G222R 0.15 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 7 24901325 24901325 C T OSBPL3 Missense_Mutation p.D312N 0.30 tolerated(0.3) benign(0.115) TCGA-RP-A694-06 7 25266623 25266623 T C NPVF Missense_Mutation p.E54G 0.31 deleterious(0) possibly_damaging(0.856) TCGA-RP-A694-06 7 30915203 30915203 C T FAM188B Missense_Mutation p.L635F 0.32 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 7 31918658 31918658 G A PDE1C Missense_Mutation p.R186W 0.41 deleterious(0) probably_damaging(0.995) TCGA-RP-A694-06 7 35280641 35280641 C T TBX20 Silent p.L221L 0.21 TCGA-RP-A694-06 7 36660410 36660410 C T AOAH Missense_Mutation p.D227N 0.12 deleterious(0.01) probably_damaging(1) TCGA-RP-A694-06 7 45141670 45141670 C A TBRG4 Splice_Site p.X441_splice 0.32 TCGA-RP-A694-06 7 48068433 48068433 C T SUN3 Missense_Mutation p.E35K 0.28 tolerated_low_confidence(0.3) benign(0.025) TCGA-RP-A694-06 7 48375068 48375068 C T ABCA13 Missense_Mutation p.T3350I 0.22 benign(0.125) TCGA-RP-A694-06 7 49842378 49842378 G A VWC2 Silent p.Q256Q 0.22 TCGA-RP-A694-06 7 6037039 6037039 G A PMS2 Missense_Mutation p.P241S 0.29 deleterious(0.02) benign(0.225) TCGA-RP-A694-06 7 72985041 72985041 G A TBL2 Silent p.S380S 0.32 TCGA-RP-A694-06 7 73279336 73279336 G A WBSCR28 Missense_Mutation p.R29Q 0.30 deleterious(0) possibly_damaging(0.776) TCGA-RP-A694-06 7 80303447 80303447 C T CD36 Missense_Mutation p.S468L 0.27 tolerated(0.14) benign(0.003) TCGA-RP-A694-06 7 81746402 81746402 G A CACNA2D1 Nonsense_Mutation p.Q162* 0.24 TCGA-RP-A694-06 7 82545960 82545960 C T PCLO Missense_Mutation p.R3781Q 0.33 unknown(0) TCGA-RP-A694-06 7 87214993 87214993 G A ABCB1 Missense_Mutation p.R41C 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-RP-A694-06 7 913134 913134 C T SUN1 3'UTR 0.33 TCGA-RP-A694-06 7 92762472 92762472 G A SAMD9L Missense_Mutation p.S938L 0.32 deleterious(0) possibly_damaging(0.749) TCGA-RP-A694-06 7 92763773 92763773 C T SAMD9L Silent p.L504L 0.24 TCGA-RP-A694-06 7 94947636 94947636 G A PON1 Silent p.I48I 0.23 TCGA-RP-A694-06 7 97614205 97614205 C T OCM2 3'UTR 0.29 TCGA-RP-A694-06 7 99434119 99434119 C T CYP3A43 Missense_Mutation p.P39S 0.40 tolerated(0.06) possibly_damaging(0.602) TCGA-RP-A694-06 7 99564709 99564709 G A AZGP1 Missense_Mutation p.P272S 0.22 tolerated(0.74) possibly_damaging(0.888) TCGA-RP-A694-06 7 99711924 99711924 G A TAF6 Intron 0.29 TCGA-RP-A694-06 8 105361681 105361681 C T DCSTAMP Missense_Mutation p.L301F 0.24 tolerated(0.28) benign(0.06) TCGA-RP-A694-06 8 106431503 106431503 G A ZFPM2 Missense_Mutation p.E58K 0.20 tolerated(0.26) benign(0.12) TCGA-RP-A694-06 8 106815323 106815323 G A ZFPM2 Missense_Mutation p.E1005K 0.12 tolerated(0.24) benign(0.049) TCGA-RP-A694-06 8 106815630 106815630 G T ZFPM2 Missense_Mutation p.G1107V 0.20 tolerated(0.07) benign(0.411) TCGA-RP-A694-06 8 10755744 10755744 C T XKR6 Silent p.T548T 0.23 TCGA-RP-A694-06 8 109796925 109796925 G A TMEM74 Missense_Mutation p.H135Y 0.24 tolerated(0.61) benign(0.216) TCGA-RP-A694-06 8 110530623 110530623 A T PKHD1L1 Missense_Mutation p.I3973F 0.20 deleterious(0) probably_damaging(0.987) TCGA-RP-A694-06 8 110587401 110587401 C T SYBU Missense_Mutation p.E576K 0.27 deleterious(0) probably_damaging(0.978) TCGA-RP-A694-06 8 11189261 11189261 C G SLC35G5 Missense_Mutation p.P216A 0.18 tolerated(0.16) possibly_damaging(0.578) TCGA-RP-A694-06 8 113236962 113236962 C T CSMD3 3'UTR 0.17 TCGA-RP-A694-06 8 11831607 11831607 C T DEFB136 Missense_Mutation p.D26N 0.18 tolerated(0.32) benign(0) TCGA-RP-A694-06 8 119391615 119391615 C T SAMD12 3'UTR 0.36 TCGA-RP-A694-06 8 121238865 121238865 G A COL14A1 Splice_Site p.X622_splice 0.25 TCGA-RP-A694-06 8 122626849 122626849 G A HAS2 Missense_Mutation p.P387S 0.20 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 8 124988150 124988150 C T FER1L6 Silent p.I232I 0.49 TCGA-RP-A694-06 8 125035765 125035765 G A FER1L6 Missense_Mutation p.D739N 0.28 tolerated(0.16) benign(0.097) TCGA-RP-A694-06 8 12600729 12600729 T C LONRF1 Missense_Mutation p.K262E 0.31 tolerated(0.67) benign(0.297) TCGA-RP-A694-06 8 128428288 128428288 G A POU5F1B Silent p.G59G 0.21 TCGA-RP-A694-06 8 13251192 13251192 G A DLC1 Missense_Mutation p.S395L 0.18 tolerated_low_confidence(0.28) benign(0.002) TCGA-RP-A694-06 8 139164748 139164748 G A FAM135B Missense_Mutation p.S657F 0.46 tolerated(0.52) benign(0.007) TCGA-RP-A694-06 8 141321352 141321352 G A TRAPPC9 Silent p.I637I 0.22 TCGA-RP-A694-06 8 142228903 142228903 C T SLC45A4 Missense_Mutation p.G228D 0.23 tolerated(0.19) benign(0.002) TCGA-RP-A694-06 8 142367518 142367518 G A GPR20 Missense_Mutation p.A169V 0.24 tolerated(0.22) benign(0.033) TCGA-RP-A694-06 8 1513903 1513903 C T DLGAP2 Missense_Mutation p.P349S 0.25 deleterious(0) probably_damaging(0.999) TCGA-RP-A694-06 8 15480759 15480759 G A TUSC3 Splice_Site p.X103_splice 0.17 TCGA-RP-A694-06 8 16012584 16012584 G A MSR1 Missense_Mutation p.P296L 0.50 deleterious(0.01) probably_damaging(0.968) TCGA-RP-A694-06 8 17406287 17406287 G A SLC7A2 Silent p.V251V 0.25 TCGA-RP-A694-06 8 2065671 2065671 T G MYOM2 Intron 0.15 TCGA-RP-A694-06 8 22900731 22900731 G A TNFRSF10B Missense_Mutation p.T57I 0.23 tolerated(0.73) benign(0.003) TCGA-RP-A694-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.12 deleterious(0.01) benign(0.01) TCGA-RP-A694-06 8 27099930 27099930 C T STMN4 Silent p.S31S 0.13 TCGA-RP-A694-06 8 27362641 27362641 C T EPHX2 Missense_Mutation p.T172I 0.20 tolerated(0.17) benign(0.001) TCGA-RP-A694-06 8 2910029 2910029 C T CSMD1 Missense_Mutation p.E2539K 0.40 possibly_damaging(0.757) TCGA-RP-A694-06 8 30694598 30694598 C T TEX15 Missense_Mutation p.E2685K 0.23 deleterious(0) benign(0.356) TCGA-RP-A694-06 8 35631866 35631866 C T UNC5D Missense_Mutation p.P843L 0.19 deleterious(0.04) benign(0.006) TCGA-RP-A694-06 8 41791341 41791341 G A KAT6A Missense_Mutation p.P1466L 0.26 unknown(0) TCGA-RP-A694-06 8 52320684 52320684 T C PXDNL Missense_Mutation p.N1167S 0.29 tolerated(0.4) benign(0.004) TCGA-RP-A694-06 8 52370167 52370167 C T PXDNL Missense_Mutation p.M291I 0.21 deleterious(0.02) probably_damaging(0.949) TCGA-RP-A694-06 8 53084518 53084518 C A ST18 Silent p.G301G 0.59 TCGA-RP-A694-06 8 55537313 55537313 G A RP1 Missense_Mutation p.D291N 0.17 tolerated(0.06) benign(0.048) TCGA-RP-A694-06 8 55540140 55540140 C T RP1 Missense_Mutation p.S1233F 0.21 tolerated(0.5) benign(0.002) TCGA-RP-A694-06 8 56436024 56436024 C T XKR4 Silent p.F397F 0.24 TCGA-RP-A694-06 8 66992641 66992641 G A DNAJC5B Silent p.T121T 0.28 TCGA-RP-A694-06 8 6782356 6782356 C T DEFA6 Missense_Mutation p.R96K 0.15 tolerated(1) benign(0.1) TCGA-RP-A694-06 8 68950455 68950455 C T PREX2 Missense_Mutation p.S256F 0.20 deleterious(0) probably_damaging(0.915) TCGA-RP-A694-06 8 68950472 68950472 G T PREX2 Nonsense_Mutation p.E262* 0.20 TCGA-RP-A694-06 8 69017486 69017486 C T PREX2 Intron 0.22 TCGA-RP-A694-06 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.21 TCGA-RP-A694-06 9 104432767 104432767 C T GRIN3A Missense_Mutation p.D643N 0.40 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 9 105768139 105768139 A G CYLC2 3'UTR 0.27 TCGA-RP-A694-06 9 107288960 107288960 G A OR13C4 Silent p.F177F 0.30 TCGA-RP-A694-06 9 113538089 113538089 G A MUSK Silent p.K402K 0.35 TCGA-RP-A694-06 9 113538240 113538240 C T MUSK Silent p.L453L 0.29 TCGA-RP-A694-06 9 117553057 117553057 G A TNFSF15 Missense_Mutation p.S144L 0.26 deleterious(0.01) possibly_damaging(0.686) TCGA-RP-A694-06 9 123580169 123580169 G A PSMD5 3'UTR 0.27 TCGA-RP-A694-06 9 125316085 125316085 G A OR1N2 Missense_Mutation p.E213K 0.28 tolerated(0.06) benign(0.076) TCGA-RP-A694-06 9 125486451 125486451 C T OR1L4 Silent p.Y61Y 0.31 TCGA-RP-A694-06 9 125562578 125562578 C T OR1K1 Silent p.P59P 0.25 TCGA-RP-A694-06 9 130674849 130674849 C T ST6GALNAC4 Missense_Mutation p.M103I 0.37 probably_damaging(0.999) TCGA-RP-A694-06 9 131696297 131696297 C T PHYHD1 Silent p.F92F 0.30 TCGA-RP-A694-06 9 131864772 131864772 G A CRAT Silent p.S179S 0.26 TCGA-RP-A694-06 9 133339499 133339499 G A ASS1 Missense_Mutation p.G122E 0.28 deleterious(0.02) possibly_damaging(0.836) TCGA-RP-A694-06 9 134360378 134360378 C T PRRC2B Missense_Mutation p.P1870L 0.21 deleterious(0.04) possibly_damaging(0.736) TCGA-RP-A694-06 9 135702433 135702433 G A AK8 Missense_Mutation p.H189Y 0.38 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 9 135781200 135781200 G A TSC1 Missense_Mutation p.P589S 0.33 tolerated(0.15) benign(0.081) TCGA-RP-A694-06 9 135796799 135796799 G A TSC1 Missense_Mutation p.H230Y 0.19 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 9 137690273 137690273 G A COL5A1 Missense_Mutation p.G973E 0.27 unknown(0) TCGA-RP-A694-06 9 139908469 139908469 G A ABCA2 Missense_Mutation p.S1421L 0.32 tolerated(0.08) benign(0.004) TCGA-RP-A694-06 9 140777443 140777443 C T CACNA1B Intron 0.23 TCGA-RP-A694-06 9 21166381 21166381 G A IFNA21 Silent p.I77I 0.51 TCGA-RP-A694-06 9 21350856 21350856 G A IFNA6 Silent p.L11L 0.49 TCGA-RP-A694-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.36 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 9 35546521 35546521 G A RUSC2 Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.943) TCGA-RP-A694-06 9 35957391 35957391 C T OR2S2 Silent p.R235R 0.36 TCGA-RP-A694-06 9 37744558 37744558 G A FRMPD1 Silent p.Q843Q 0.19 TCGA-RP-A694-06 9 37974631 37974631 G A SHB Missense_Mutation p.P348S 0.37 tolerated(0.47) benign(0.044) TCGA-RP-A694-06 9 39178307 39178307 C T CNTNAP3 Missense_Mutation p.D197N 0.15 tolerated(1) benign(0.005) TCGA-RP-A694-06 9 40716017 40716017 A T FAM74A3 RNA 0.15 TCGA-RP-A694-06 9 72046109 72046109 G A APBA1 3'UTR 0.36 TCGA-RP-A694-06 9 74332991 74332991 G A TMEM2 Nonsense_Mutation p.R758* 0.35 TCGA-RP-A694-06 9 74838073 74838073 C T GDA Missense_Mutation p.S215F 0.21 deleterious(0.01) possibly_damaging(0.543) TCGA-RP-A694-06 9 75407251 75407251 G A TMC1 Missense_Mutation p.E517K 0.25 deleterious(0) probably_damaging(0.988) TCGA-RP-A694-06 9 77354359 77354359 G A TRPM6 Nonsense_Mutation p.Q1832* 0.34 TCGA-RP-A694-06 9 78547339 78547339 G A PCSK5 Silent p.T79T 0.34 TCGA-RP-A694-06 9 78686680 78686680 G A PCSK5 Missense_Mutation p.E254K 0.26 deleterious(0) probably_damaging(1) TCGA-RP-A694-06 9 90535428 90535428 C T SPATA31C1 RNA 0.32 TCGA-RP-A694-06 9 91727471 91727471 C T SHC3 Missense_Mutation p.R182K 0.19 deleterious(0.01) probably_damaging(0.942) TCGA-RP-A694-06 9 96021332 96021332 C T WNK2 Silent p.F834F 0.31 TCGA-RP-A694-06 9 97365779 97365779 C T FBP1 Missense_Mutation p.E301K 0.26 tolerated(0.44) benign(0.008) TCGA-RP-A694-06 9 97365780 97365780 C T FBP1 Silent p.K300K 0.28 TCGA-RP-A694-06 X 10085349 10085349 C T WWC3 Missense_Mutation p.P417L 0.47 tolerated(0.08) probably_damaging(1) TCGA-RP-A694-06 X 105280576 105280576 G A SERPINA7 Silent p.V158V 0.65 TCGA-RP-A694-06 X 108925960 108925960 A T ACSL4 Missense_Mutation p.Y173N 0.76 tolerated(0.27) benign(0.129) TCGA-RP-A694-06 X 123556451 123556451 G A TENM1 Missense_Mutation p.P1381L 0.59 deleterious(0) probably_damaging(0.985) TCGA-RP-A694-06 X 133379594 133379594 G A CCDC160 Missense_Mutation p.G255E 0.67 deleterious(0) probably_damaging(0.969) TCGA-RP-A694-06 X 140985306 140985306 G A MAGEC3 Intron 0.67 TCGA-RP-A694-06 X 140995697 140995697 C T MAGEC1 Missense_Mutation p.S836F 0.59 deleterious_low_confidence(0.01) unknown(0) TCGA-RP-A694-06 X 150869164 150869164 C T PRRG3 Missense_Mutation p.R119W 0.62 deleterious(0.04) probably_damaging(0.999) TCGA-RP-A694-06 X 151514098 151514098 G A GABRA3 Missense_Mutation p.R73C 0.56 deleterious(0.01) probably_damaging(0.993) TCGA-RP-A694-06 X 151870268 151870268 G A MAGEA6 3'UTR 0.63 TCGA-RP-A694-06 X 152770229 152770229 C T BGN Missense_Mutation p.S47L 0.68 tolerated(0.23) benign(0.111) TCGA-RP-A694-06 X 153553686 153553686 G A TKTL1 Missense_Mutation p.G440E 0.52 deleterious(0.02) possibly_damaging(0.873) TCGA-RP-A694-06 X 155234227 155234227 G A IL9R Nonsense_Mutation p.W192* 0.58 TCGA-RP-A694-06 X 1584834 1584834 G A P2RY8 Silent p.F206F 0.40 TCGA-RP-A694-06 X 16170919 16170919 C T GRPR 3'UTR 0.80 TCGA-RP-A694-06 X 30578046 30578046 C T CXorf21 Missense_Mutation p.D143N 0.67 tolerated(0.06) benign(0.079) TCGA-RP-A694-06 X 48418269 48418269 C T TBC1D25 Missense_Mutation p.H325Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-RP-A694-06 X 6451771 6451771 G A VCX3A 3'UTR 0.55 TCGA-RP-A694-06 X 6451772 6451772 G A VCX3A 3'UTR 0.54 TCGA-RP-A694-06 X 65474949 65474949 C T HEPH Missense_Mutation p.S933F 0.64 deleterious(0) possibly_damaging(0.883) TCGA-RP-A694-06 X 77913323 77913323 C T ZCCHC5 Missense_Mutation p.E199K 0.60 tolerated(0.05) benign(0.004) TCGA-RP-A694-06 X 88009059 88009059 G A CPXCR1 Missense_Mutation p.G215E 0.73 tolerated(0.18) probably_damaging(0.988) TCGA-RP-A695-06 10 115973766 115973766 C T TDRD1 Missense_Mutation p.P702L 0.69 tolerated(0.14) probably_damaging(0.991) TCGA-RP-A695-06 10 122648694 122648694 C T WDR11 Silent p.S742S 0.57 TCGA-RP-A695-06 10 124329702 124329702 C T DMBT1 Missense_Mutation p.P39L 0.52 tolerated_low_confidence(0.18) benign(0.005) TCGA-RP-A695-06 10 134671224 134671224 G A TTC40 Missense_Mutation p.A1815V 0.50 tolerated(0.3) benign(0.003) TCGA-RP-A695-06 10 17157555 17157555 G A CUBN Missense_Mutation p.S212F 0.34 tolerated(0.76) benign(0.093) TCGA-RP-A695-06 10 20432347 20432347 G A PLXDC2 Splice_Site p.X222_splice 0.37 TCGA-RP-A695-06 10 21098779 21098779 G A NEBL Missense_Mutation p.P856L 0.29 deleterious(0) probably_damaging(0.973) TCGA-RP-A695-06 10 23244844 23244844 G A ARMC3 Missense_Mutation p.G92E 0.38 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 10 23481532 23481532 G A PTF1A Missense_Mutation p.D25N 0.42 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-RP-A695-06 10 25840015 25840015 G A GPR158 Splice_Site p.X505_splice 0.27 TCGA-RP-A695-06 10 26508064 26508064 G A GAD2 Missense_Mutation p.D127N 0.39 tolerated(0.08) probably_damaging(0.981) TCGA-RP-A695-06 10 27356151 27356151 G A ANKRD26 Missense_Mutation p.P381L 0.26 tolerated(0.05) benign(0.112) TCGA-RP-A695-06 10 28023391 28023391 G A MKX Missense_Mutation p.R278C 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-RP-A695-06 10 30318683 30318683 C T KIAA1462 Missense_Mutation p.E132K 0.33 tolerated(0.12) benign(0.139) TCGA-RP-A695-06 10 31809237 31809237 G A ZEB1 Missense_Mutation p.R326Q 0.33 tolerated(0.08) benign(0.279) TCGA-RP-A695-06 10 37440998 37440998 C T ANKRD30A Silent p.F496F 0.36 TCGA-RP-A695-06 10 436312 436312 A G DIP2C Silent p.G462G 0.31 TCGA-RP-A695-06 10 46967443 46967443 C T SYT15 Missense_Mutation p.E212K 0.17 deleterious(0) probably_damaging(0.958) TCGA-RP-A695-06 10 46999824 46999824 C T GPRIN2 Missense_Mutation p.T315I 0.21 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 10 48390902 48390902 C T RBP3 5'UTR 0.35 TCGA-RP-A695-06 10 49667847 49667847 A G ARHGAP22 Missense_Mutation p.V196A 0.39 tolerated(0.14) possibly_damaging(0.747) TCGA-RP-A695-06 10 50315705 50315705 C T VSTM4 Missense_Mutation p.E131K 0.40 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 10 50532072 50532072 C A C10orf71 Silent p.S494S 0.41 TCGA-RP-A695-06 10 50535092 50535092 C T C10orf71 3'UTR 0.21 TCGA-RP-A695-06 10 50856632 50856632 C T CHAT Missense_Mutation p.T454I 0.29 tolerated(0.58) possibly_damaging(0.528) TCGA-RP-A695-06 10 50946087 50946087 A C OGDHL Missense_Mutation p.L808R 0.41 deleterious(0.03) possibly_damaging(0.886) TCGA-RP-A695-06 10 52575778 52575778 G A A1CF Missense_Mutation p.P385S 0.31 tolerated(0.09) possibly_damaging(0.69) TCGA-RP-A695-06 10 55570405 55570405 C T PCDH15 Missense_Mutation p.G1472R 0.31 benign(0.002) TCGA-RP-A695-06 10 55591165 55591165 C T PCDH15 Missense_Mutation p.G1371E 0.29 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 10 55700682 55700682 G A PCDH15 Missense_Mutation p.S1059F 0.39 tolerated(0.14) benign(0.038) TCGA-RP-A695-06 10 55700683 55700683 A G PCDH15 Missense_Mutation p.S1059P 0.39 tolerated(0.27) possibly_damaging(0.611) TCGA-RP-A695-06 10 55944944 55944944 T G PCDH15 Missense_Mutation p.T464P 0.39 deleterious(0.02) possibly_damaging(0.908) TCGA-RP-A695-06 10 55944966 55944966 C T PCDH15 Silent p.Q456Q 0.35 TCGA-RP-A695-06 10 56089394 56089394 C T PCDH15 Missense_Mutation p.E223K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-RP-A695-06 10 56138575 56138575 G A PCDH15 Silent p.F95F 0.33 TCGA-RP-A695-06 10 61829697 61829697 C T ANK3 Missense_Mutation p.E3648K 0.36 probably_damaging(0.956) TCGA-RP-A695-06 10 61835693 61835693 G A ANK3 Missense_Mutation p.S1649L 0.36 benign(0.407) TCGA-RP-A695-06 10 61865798 61865798 G A ANK3 Missense_Mutation p.P1065S 0.24 probably_damaging(0.999) TCGA-RP-A695-06 10 64219504 64219504 G A ZNF365 Nonsense_Mutation p.W310* 0.38 TCGA-RP-A695-06 10 64573889 64573889 G A EGR2 Missense_Mutation p.P170L 0.36 deleterious(0.02) probably_damaging(0.975) TCGA-RP-A695-06 10 64913917 64913917 C T NRBF2 Missense_Mutation p.S268F 0.20 deleterious(0.02) possibly_damaging(0.772) TCGA-RP-A695-06 10 64974885 64974885 A C JMJD1C Missense_Mutation p.L348V 0.45 tolerated(1) benign(0.001) TCGA-RP-A695-06 10 68940160 68940160 C T CTNNA3 Missense_Mutation p.R321K 0.31 deleterious(0) benign(0.22) TCGA-RP-A695-06 10 71142303 71142303 C T HK1 Silent p.F446F 0.40 TCGA-RP-A695-06 10 72537057 72537057 C T TBATA Missense_Mutation p.G181E 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-RP-A695-06 10 73766958 73766958 C T CHST3 Nonsense_Mutation p.Q57* 0.28 TCGA-RP-A695-06 10 74666356 74666356 G A OIT3 Missense_Mutation p.E183K 0.30 tolerated(0.34) possibly_damaging(0.515) TCGA-RP-A695-06 10 7627961 7627961 G A ITIH5 Silent p.S337S 0.26 TCGA-RP-A695-06 10 76854560 76854560 C T DUSP13 Silent p.E207E 0.30 TCGA-RP-A695-06 10 97607246 97607246 G A ENTPD1 Missense_Mutation p.G298E 0.54 deleterious(0.02) probably_damaging(0.992) TCGA-RP-A695-06 10 98079148 98079148 G A DNTT Splice_Site p.X169_splice 0.58 TCGA-RP-A695-06 11 101773380 101773380 T G ANGPTL5 Missense_Mutation p.H171P 0.31 deleterious(0.02) possibly_damaging(0.639) TCGA-RP-A695-06 11 1077597 1077597 G A MUC2 Splice_Site p.X116_splice 0.44 TCGA-RP-A695-06 11 1104227 1104227 G A MUC2 Silent p.R2806R 0.24 TCGA-RP-A695-06 11 113270602 113270602 G A ANKK1 Silent p.G637G 0.39 TCGA-RP-A695-06 11 113660064 113660064 G A ATF4P4 RNA 0.24 TCGA-RP-A695-06 11 113934564 113934564 T G ZBTB16 Missense_Mutation p.V181G 0.25 deleterious(0.03) benign(0.03) TCGA-RP-A695-06 11 114278251 114278251 C T RBM7 Nonsense_Mutation p.Q175* 0.38 TCGA-RP-A695-06 11 118011948 118011948 G A SCN4B Silent p.F189F 0.24 TCGA-RP-A695-06 11 118514603 118514603 C T PHLDB1 Missense_Mutation p.S988F 0.28 deleterious(0.04) benign(0.336) TCGA-RP-A695-06 11 120188029 120188029 C T POU2F3 Silent p.N411N 0.44 TCGA-RP-A695-06 11 120732707 120732707 C T GRIK4 Missense_Mutation p.R262C 0.46 tolerated(0.08) probably_damaging(0.963) TCGA-RP-A695-06 11 123847480 123847480 T G OR10S1 Missense_Mutation p.K307Q 0.48 tolerated(0.17) benign(0.023) TCGA-RP-A695-06 11 124179883 124179883 G A OR8D1 Silent p.F260F 0.65 TCGA-RP-A695-06 11 124519595 124519595 G A SIAE Silent p.I214I 0.33 TCGA-RP-A695-06 11 124623763 124623763 C T ESAM Missense_Mutation p.A318T 0.23 tolerated(0.08) possibly_damaging(0.76) TCGA-RP-A695-06 11 1257738 1257738 C T MUC5B Silent p.A1001A 0.11 TCGA-RP-A695-06 11 126147657 126147657 C T FOXRED1 3'UTR 0.20 TCGA-RP-A695-06 11 129321090 129321090 C T BARX2 Silent p.S211S 0.50 TCGA-RP-A695-06 11 129782113 129782113 G A PRDM10 Missense_Mutation p.S954F 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RP-A695-06 11 17414665 17414665 T G ABCC8 Missense_Mutation p.H1540P 0.28 tolerated(0.2) benign(0.284) TCGA-RP-A695-06 11 17547941 17547941 C G USH1C Missense_Mutation p.E209D 0.12 tolerated(0.07) benign(0.013) TCGA-RP-A695-06 11 17548834 17548834 G A USH1C Silent p.S144S 0.17 TCGA-RP-A695-06 11 18269487 18269487 G A SAA2 Silent p.F24F 0.17 TCGA-RP-A695-06 11 19247302 19247302 C T E2F8 Missense_Mutation p.R668K 0.47 tolerated(1) benign(0.002) TCGA-RP-A695-06 11 33127312 33127312 G A CSTF3 Intron 0.29 TCGA-RP-A695-06 11 47469700 47469700 G A RAPSN Silent p.F65F 0.50 TCGA-RP-A695-06 11 4790355 4790355 G A OR51F1 Missense_Mutation p.R265C 0.40 deleterious(0.01) benign(0.365) TCGA-RP-A695-06 11 48238598 48238598 C T OR4B1 Silent p.F79F 0.25 TCGA-RP-A695-06 11 48267238 48267238 G A OR4X2 Missense_Mutation p.G195R 0.48 deleterious(0) probably_damaging(0.939) TCGA-RP-A695-06 11 4869592 4869592 G A OR51S1 Silent p.L283L 0.35 TCGA-RP-A695-06 11 49168441 49168441 C T FOLH1 Missense_Mutation p.G707E 0.46 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 11 4967891 4967891 C T OR51A4 Missense_Mutation p.G147E 0.13 deleterious(0) probably_damaging(0.969) TCGA-RP-A695-06 11 4976413 4976413 G A OR51A2 Silent p.S177S 0.59 TCGA-RP-A695-06 11 51412219 51412219 G A OR4A5 Silent p.F59F 0.41 TCGA-RP-A695-06 11 51515712 51515712 G A OR4C46 Missense_Mutation p.G144E 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.865) TCGA-RP-A695-06 11 5153355 5153355 C T OR52A5 Missense_Mutation p.R173Q 0.43 tolerated(0.17) benign(0.025) TCGA-RP-A695-06 11 5254274 5254274 C T HBD Missense_Mutation p.E122K 0.25 tolerated(0.08) benign(0.015) TCGA-RP-A695-06 11 5274594 5274594 G A HBG2 Silent p.F119F 0.23 TCGA-RP-A695-06 11 5290726 5290726 C T HBE1 Silent p.E91E 0.34 TCGA-RP-A695-06 11 5290787 5290787 G A HBE1 Missense_Mutation p.S71F 0.46 deleterious(0.03) probably_damaging(0.98) TCGA-RP-A695-06 11 5411211 5411211 G A OR51M1 Missense_Mutation p.E195K 0.43 deleterious(0) possibly_damaging(0.488) TCGA-RP-A695-06 11 5510673 5510673 C T OR52D1 Missense_Mutation p.S246F 0.50 deleterious(0) probably_damaging(0.951) TCGA-RP-A695-06 11 55563936 55563936 C T OR5D14 Missense_Mutation p.A302V 0.46 deleterious(0.02) benign(0.019) TCGA-RP-A695-06 11 55606785 55606785 G A OR5D16 Silent p.L186L 0.47 TCGA-RP-A695-06 11 55606988 55606988 A T OR5D16 Missense_Mutation p.H254L 0.15 deleterious(0) possibly_damaging(0.904) TCGA-RP-A695-06 11 55735767 55735767 G A OR10AG1 Missense_Mutation p.S58F 0.19 deleterious(0) possibly_damaging(0.767) TCGA-RP-A695-06 11 56086458 56086458 C T OR8K3 Missense_Mutation p.L226F 0.20 tolerated_low_confidence(0.24) benign(0.396) TCGA-RP-A695-06 11 56757072 56757072 G C OR5AK2 Missense_Mutation p.M228I 0.53 tolerated(0.62) benign(0.06) TCGA-RP-A695-06 11 5758401 5758401 G A OR56B1 Missense_Mutation p.D219N 0.24 deleterious(0.01) possibly_damaging(0.764) TCGA-RP-A695-06 11 5809378 5809378 A T OR52N1 Silent p.I223I 0.24 TCGA-RP-A695-06 11 58125941 58125941 G A OR5B17 Missense_Mutation p.S201L 0.14 deleterious_low_confidence(0.02) benign(0.152) TCGA-RP-A695-06 11 58207172 58207172 G A OR5B12 Silent p.F151F 0.48 TCGA-RP-A695-06 11 5841842 5841842 G A OR52N2 Missense_Mutation p.E93K 0.25 tolerated(0.06) benign(0.012) TCGA-RP-A695-06 11 58601985 58601985 G A GLYATL2 Silent p.L268L 0.46 TCGA-RP-A695-06 11 5862260 5862260 G A OR52E6 Missense_Mutation p.P290S 0.51 deleterious(0.01) possibly_damaging(0.848) TCGA-RP-A695-06 11 60777154 60777154 G A CD6 Missense_Mutation p.E298K 0.37 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 11 62346106 62346106 A G TUT1 Missense_Mutation p.S401P 0.44 deleterious(0.01) possibly_damaging(0.888) TCGA-RP-A695-06 11 6261524 6261524 T C CNGA4 Missense_Mutation p.F167S 0.18 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 11 6261772 6261772 G A CNGA4 Missense_Mutation p.D250N 0.53 deleterious(0) benign(0.056) TCGA-RP-A695-06 11 62760833 62760833 G A SLC22A8 Intron 0.27 TCGA-RP-A695-06 11 6292266 6292266 C T CCKBR Silent p.C279C 0.37 TCGA-RP-A695-06 11 63676351 63676351 C T MARK2 Missense_Mutation p.P670L 0.19 tolerated(0.11) benign(0.016) TCGA-RP-A695-06 11 64504407 64504407 C T RASGRP2 Missense_Mutation p.G305S 0.21 deleterious(0) probably_damaging(0.986) TCGA-RP-A695-06 11 6479042 6479042 G A TRIM3 Silent p.A133A 0.42 TCGA-RP-A695-06 11 64940194 64940194 G A SPDYC Missense_Mutation p.D186N 0.42 tolerated(0.08) benign(0.317) TCGA-RP-A695-06 11 65167281 65167281 C T FRMD8 Missense_Mutation p.S293F 0.45 tolerated(0.05) benign(0.003) TCGA-RP-A695-06 11 65810762 65810762 G A GAL3ST3 Missense_Mutation p.A171V 0.34 deleterious(0) probably_damaging(0.946) TCGA-RP-A695-06 11 67402343 67402343 G A TBX10 Silent p.S107S 0.40 TCGA-RP-A695-06 11 67766694 67766694 G A UNC93B1 Silent p.S212S 0.44 TCGA-RP-A695-06 11 67766695 67766695 G A UNC93B1 Missense_Mutation p.S212F 0.42 deleterious(0.01) possibly_damaging(0.807) TCGA-RP-A695-06 11 6977342 6977342 C T ZNF215 Silent p.S378S 0.49 TCGA-RP-A695-06 11 7060073 7060073 G A NLRP14 Missense_Mutation p.D86N 0.41 tolerated(0.21) benign(0.031) TCGA-RP-A695-06 11 72005444 72005444 G A CLPB Silent p.I565I 0.18 TCGA-RP-A695-06 11 72946296 72946296 C T P2RY2 Silent p.S364S 0.43 TCGA-RP-A695-06 11 73712464 73712464 G A UCP3 Missense_Mutation p.P311L 0.30 deleterious_low_confidence(0) possibly_damaging(0.578) TCGA-RP-A695-06 11 75277832 75277832 C T SERPINH1 Silent p.F146F 0.30 TCGA-RP-A695-06 11 75431127 75431127 G A MOGAT2 Missense_Mutation p.R61Q 0.47 tolerated(0.11) benign(0.055) TCGA-RP-A695-06 11 7723015 7723015 G A OVCH2 Silent p.V189V 0.43 TCGA-RP-A695-06 11 77924916 77924916 G A USP35 3'UTR 0.31 TCGA-RP-A695-06 11 78369258 78369258 C T TENM4 Missense_Mutation p.A2719T 0.24 tolerated(0.66) benign(0.001) TCGA-RP-A695-06 11 78369259 78369259 C T TENM4 Silent p.R2718R 0.24 TCGA-RP-A695-06 11 7984935 7984935 G A NLRP10 Silent p.T36T 0.27 TCGA-RP-A695-06 11 82985684 82985685 - AAA CCDC90B In_Frame_Ins p.N141_E142insF 0.53 TCGA-RP-A695-06 11 83173014 83173014 T C DLG2 Intron 0.33 TCGA-RP-A695-06 11 89431629 89431629 C T FOLH1B RNA 0.23 TCGA-RP-A695-06 11 89431630 89431630 C T FOLH1B RNA 0.24 TCGA-RP-A695-06 11 92523210 92523210 C T FAT3 Silent p.I1479I 0.22 TCGA-RP-A695-06 11 99932099 99932099 C T CNTN5 Missense_Mutation p.S379F 0.18 tolerated(0.09) possibly_damaging(0.653) TCGA-RP-A695-06 12 100811873 100811873 G A SLC17A8 Missense_Mutation p.G455E 0.45 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 12 101561919 101561919 C T SLC5A8 Missense_Mutation p.M425I 0.69 deleterious(0) benign(0.004) TCGA-RP-A695-06 12 102071169 102071169 G A MYBPC1 Missense_Mutation p.D1029N 0.21 tolerated(0.36) benign(0.287) TCGA-RP-A695-06 12 102153921 102153921 C T GNPTAB Missense_Mutation p.D1046N 0.29 deleterious(0.03) probably_damaging(1) TCGA-RP-A695-06 12 102160057 102160057 C T GNPTAB Missense_Mutation p.S475N 0.30 tolerated(0.19) benign(0.003) TCGA-RP-A695-06 12 103288526 103288526 C T PAH Silent p.K113K 0.32 TCGA-RP-A695-06 12 103696260 103696260 G A C12orf42 Missense_Mutation p.P237S 0.50 tolerated(0.81) benign(0.034) TCGA-RP-A695-06 12 104121053 104121053 C T STAB2 Silent p.F1620F 0.34 TCGA-RP-A695-06 12 109717564 109717564 G A FOXN4 Missense_Mutation p.S489F 0.56 deleterious(0.02) possibly_damaging(0.534) TCGA-RP-A695-06 12 10978548 10978548 G A TAS2R10 Silent p.F107F 0.47 TCGA-RP-A695-06 12 111351991 111351991 C T MYL2 Silent p.K91K 0.42 TCGA-RP-A695-06 12 112717094 112717094 C A HECTD4 Missense_Mutation p.G398V 0.34 benign(0) TCGA-RP-A695-06 12 112717095 112717095 C T HECTD4 Missense_Mutation p.G398R 0.32 benign(0.249) TCGA-RP-A695-06 12 113306142 113306142 G A RPH3A Intron 0.27 TCGA-RP-A695-06 12 113866259 113866259 C T SDSL Missense_Mutation p.S70F 0.11 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 12 116424217 116424217 G A MED13L Missense_Mutation p.P1398S 0.34 deleterious(0) unknown(0) TCGA-RP-A695-06 12 117664507 117664507 C T NOS1 Missense_Mutation p.V1263I 0.34 tolerated(0.09) possibly_damaging(0.823) TCGA-RP-A695-06 12 117664508 117664508 C T NOS1 Silent p.L1262L 0.34 TCGA-RP-A695-06 12 117768411 117768411 G A NOS1 Missense_Mutation p.P155L 0.30 tolerated_low_confidence(0.22) benign(0.003) TCGA-RP-A695-06 12 119583469 119583469 C T SRRM4 Missense_Mutation p.T352I 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.81) TCGA-RP-A695-06 12 119583470 119583470 C T SRRM4 Silent p.T352T 0.47 TCGA-RP-A695-06 12 119588903 119588903 G A SRRM4 Missense_Mutation p.M386I 0.38 tolerated_low_confidence(0.19) benign(0.005) TCGA-RP-A695-06 12 122396368 122396368 C T WDR66 Missense_Mutation p.L641F 0.35 deleterious(0.03) benign(0.274) TCGA-RP-A695-06 12 123187423 123187423 C T HCAR2 Silent p.L136L 0.43 TCGA-RP-A695-06 12 124416202 124416202 C T DNAH10 Silent p.I4194I 0.30 TCGA-RP-A695-06 12 126128723 126128723 C T TMEM132B Silent p.F508F 0.35 TCGA-RP-A695-06 12 12618584 12618584 C T LOH12CR1 Silent p.I155I 0.60 TCGA-RP-A695-06 12 132325312 132325312 C T MMP17 Missense_Mutation p.T206I 0.38 deleterious(0) possibly_damaging(0.589) TCGA-RP-A695-06 12 133438100 133438100 G A CHFR Missense_Mutation p.P247L 0.24 tolerated(0.06) benign(0.044) TCGA-RP-A695-06 12 13715620 13715620 G A GRIN2B 3'UTR 0.62 TCGA-RP-A695-06 12 18716423 18716423 C T PIK3C2G Missense_Mutation p.T1257I 0.47 tolerated(0.25) benign(0.114) TCGA-RP-A695-06 12 21459918 21459918 C T SLCO1A2 Missense_Mutation p.E114K 0.52 tolerated(0.94) benign(0.219) TCGA-RP-A695-06 12 2788828 2788828 C T CACNA1C Silent p.A1818A 0.70 TCGA-RP-A695-06 12 48383552 48383552 C T COL2A1 Missense_Mutation p.G354R 0.55 unknown(0) TCGA-RP-A695-06 12 4919977 4919977 C T KCNA6 Missense_Mutation p.S257F 0.56 tolerated(0.14) benign(0.196) TCGA-RP-A695-06 12 53449621 53449621 C T TENC1 Silent p.I261I 0.60 TCGA-RP-A695-06 12 53516963 53516963 C T SOAT2 Silent p.F445F 0.42 TCGA-RP-A695-06 12 53685478 53685478 T G ESPL1 Missense_Mutation p.M1842R 0.38 deleterious(0) benign(0.433) TCGA-RP-A695-06 12 55248398 55248398 G A MUCL1 Missense_Mutation p.G11E 0.38 deleterious_low_confidence(0) unknown(0) TCGA-RP-A695-06 12 5541467 5541467 C T NTF3 5'UTR 0.61 TCGA-RP-A695-06 12 55524209 55524209 C T OR9K2 Silent p.I219I 0.42 TCGA-RP-A695-06 12 55688163 55688163 G A OR6C6 Missense_Mutation p.P285L 0.37 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-RP-A695-06 12 58152073 58152073 C T MARCH9 Silent p.V232V 0.45 TCGA-RP-A695-06 12 69233100 69233100 C T MDM2 Missense_Mutation p.P322L 0.37 deleterious(0) probably_damaging(0.996) TCGA-RP-A695-06 12 70954521 70954521 C T PTPRB Silent p.R1454R 0.37 TCGA-RP-A695-06 12 7527173 7527173 C T CD163L1 Missense_Mutation p.G1092R 0.65 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A695-06 12 78598746 78598746 C T NAV3 Missense_Mutation p.P2267L 0.30 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 12 85546833 85546833 C T LRRIQ1 Missense_Mutation p.S1484L 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A695-06 12 89885749 89885749 G A POC1B Missense_Mutation p.S139F 0.43 deleterious(0) probably_damaging(0.992) TCGA-RP-A695-06 12 97093868 97093868 G A C12orf55 Missense_Mutation p.M2157I 0.37 tolerated(0.59) benign(0) TCGA-RP-A695-06 12 97345795 97345795 A T NEDD1 Silent p.L656L 0.14 TCGA-RP-A695-06 13 108862116 108862116 G A LIG4 Missense_Mutation p.H501Y 0.51 tolerated(0.12) benign(0.006) TCGA-RP-A695-06 13 20763508 20763508 G A GJB2 Silent p.I71I 0.48 TCGA-RP-A695-06 13 21417145 21417145 G A XPO4 Silent p.L206L 0.26 TCGA-RP-A695-06 13 21549220 21549220 G A LATS2 Missense_Mutation p.T1019I 0.32 tolerated(0.26) possibly_damaging(0.609) TCGA-RP-A695-06 13 23932610 23932610 G A SACS Silent p.L156L 0.31 TCGA-RP-A695-06 13 26788868 26788868 G A RNF6 Missense_Mutation p.S384F 0.36 deleterious(0) benign(0.259) TCGA-RP-A695-06 13 29008312 29008312 C T FLT1 Missense_Mutation p.D187N 0.37 tolerated(0.3) possibly_damaging(0.558) TCGA-RP-A695-06 13 30091798 30091798 C A SLC7A1 Missense_Mutation p.M474I 0.30 tolerated(0.4) benign(0.001) TCGA-RP-A695-06 13 35624492 35624492 G A NBEA Missense_Mutation p.G311D 0.20 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 13 36180711 36180711 G A NBEA Missense_Mutation p.R2482K 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-RP-A695-06 13 50589841 50589841 T A KCNRG Nonsense_Mutation p.L71* 0.29 TCGA-RP-A695-06 13 52667257 52667257 G A NEK5 Missense_Mutation p.P381S 0.40 tolerated(0.56) benign(0.026) TCGA-RP-A695-06 13 70413255 70413255 C T KLHL1 Missense_Mutation p.D423N 0.20 tolerated(0.18) benign(0.034) TCGA-RP-A695-06 13 92101146 92101146 C T GPC5 Silent p.L99L 0.46 TCGA-RP-A695-06 13 96239907 96239907 G A DZIP1 Missense_Mutation p.P702S 0.26 tolerated(0.55) benign(0.055) TCGA-RP-A695-06 13 99037075 99037075 C T FARP1 Silent p.I196I 0.37 TCGA-RP-A695-06 13 99042300 99042300 C T FARP1 Silent p.F315F 0.32 TCGA-RP-A695-06 14 101447377 101447377 C T SNORD114-20 RNA 0.35 TCGA-RP-A695-06 14 101506035 101506035 G A MIR376C RNA 0.33 TCGA-RP-A695-06 14 102551080 102551080 C T HSP90AA1 Missense_Mutation p.E429K 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-RP-A695-06 14 105416132 105416132 G A AHNAK2 Nonsense_Mutation p.Q1886* 0.39 TCGA-RP-A695-06 14 105847415 105847415 C T PACS2 Missense_Mutation p.S416F 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-RP-A695-06 14 106691939 106691939 C T IGHV3-21 Missense_Mutation p.G29S 0.25 deleterious_low_confidence(0.01) benign(0.256) TCGA-RP-A695-06 14 106963163 106963163 G A IGHV1-45 Missense_Mutation p.S40F 0.36 deleterious(0.02) probably_damaging(0.922) TCGA-RP-A695-06 14 19377761 19377761 G A OR11H12 Silent p.G56G 0.56 TCGA-RP-A695-06 14 19553734 19553734 C T POTEG Silent p.F106F 0.08 TCGA-RP-A695-06 14 19553772 19553772 C T POTEG Missense_Mutation p.P119L 0.05 deleterious(0.03) benign(0.007) TCGA-RP-A695-06 14 21360504 21360504 T C RNASE3 3'UTR 0.45 TCGA-RP-A695-06 14 21794251 21794251 G A RPGRIP1 Missense_Mutation p.D877N 0.33 deleterious(0.02) probably_damaging(1) TCGA-RP-A695-06 14 21883801 21883801 C T CHD8 Missense_Mutation p.E634K 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-RP-A695-06 14 21990202 21990202 G A SALL2 3'UTR 0.43 TCGA-RP-A695-06 14 22564685 22564685 G A TRDV1 Missense_Mutation p.E46K 0.39 deleterious(0.04) benign(0.397) TCGA-RP-A695-06 14 22573922 22573922 C T TRAV24 Missense_Mutation p.P48S 0.55 tolerated(0.43) benign(0.038) TCGA-RP-A695-06 14 23865528 23865528 G A MYH6 Silent p.L798L 0.32 TCGA-RP-A695-06 14 23887489 23887489 C T MYH7 Missense_Mutation p.E1367K 0.28 deleterious(0.02) possibly_damaging(0.518) TCGA-RP-A695-06 14 24538669 24538669 C T LRRC16B 3'UTR 0.36 TCGA-RP-A695-06 14 28734110 28734110 A G BNIP3P1 RNA 0.45 TCGA-RP-A695-06 14 51492053 51492053 C T TRIM9 Missense_Mutation p.G283E 0.33 tolerated(0.07) benign(0.029) TCGA-RP-A695-06 14 62542060 62542060 G A SYT16 Missense_Mutation p.G315E 0.35 deleterious(0.04) possibly_damaging(0.703) TCGA-RP-A695-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.42 TCGA-RP-A695-06 14 64491657 64491657 G A SYNE2 Silent p.R1956R 0.39 TCGA-RP-A695-06 14 65240079 65240079 C G SPTB Silent p.A1679A 0.36 TCGA-RP-A695-06 14 66208964 66208964 C T FUT8 Missense_Mutation p.P522S 0.34 tolerated(0.68) benign(0.304) TCGA-RP-A695-06 14 69262806 69262806 C T ZFP36L1 5'Flank 0.36 TCGA-RP-A695-06 14 70713392 70713392 C T ADAM21P1 RNA 0.30 TCGA-RP-A695-06 14 71216738 71216738 G A MAP3K9 Silent p.G354G 0.41 TCGA-RP-A695-06 14 73726096 73726096 C T PAPLN Missense_Mutation p.P583S 0.40 tolerated(0.46) benign(0.098) TCGA-RP-A695-06 14 75019619 75019619 C T LTBP2 Missense_Mutation p.D390N 0.48 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 14 79175907 79175907 G A NRXN3 Missense_Mutation p.M150I 0.42 deleterious(0) possibly_damaging(0.591) TCGA-RP-A695-06 14 80158559 80158559 C T NRXN3 Intron 0.28 TCGA-RP-A695-06 14 81382804 81382804 G A CEP128 Nonsense_Mutation p.R30* 0.34 TCGA-RP-A695-06 14 81837346 81837346 C T STON2 Missense_Mutation p.G186E 0.34 deleterious_low_confidence(0.02) benign(0.22) TCGA-RP-A695-06 14 81864681 81864681 C T STON2 Missense_Mutation p.V16I 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-RP-A695-06 14 88477685 88477685 C T GPR65 Missense_Mutation p.S165F 0.40 tolerated(0.69) possibly_damaging(0.548) TCGA-RP-A695-06 14 89093343 89093343 C T EML5 Missense_Mutation p.A1527T 0.23 deleterious(0.02) possibly_damaging(0.897) TCGA-RP-A695-06 14 90450890 90450890 T C TDP1 Silent p.I305I 0.35 TCGA-RP-A695-06 14 90730419 90730419 C G PSMC1 Missense_Mutation p.T167R 0.39 deleterious(0.03) benign(0.333) TCGA-RP-A695-06 14 92280059 92280059 C T TC2N Missense_Mutation p.E19K 0.19 tolerated(0.08) benign(0.03) TCGA-RP-A695-06 14 93264164 93264164 A G GOLGA5 Missense_Mutation p.N128D 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A695-06 14 94004401 94004401 G T UNC79 Nonsense_Mutation p.G220* 0.25 TCGA-RP-A695-06 14 94004402 94004402 G A UNC79 Missense_Mutation p.G220E 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 14 94464404 94464404 C T LINC00521 RNA 0.40 TCGA-RP-A695-06 15 24921105 24921105 G A NPAP1 Missense_Mutation p.D31N 0.33 tolerated(0.38) possibly_damaging(0.728) TCGA-RP-A695-06 15 25330598 25330598 C T SNORD116-18 RNA 0.39 TCGA-RP-A695-06 15 25492319 25492319 G A SNORD115-40 3'Flank 0.42 TCGA-RP-A695-06 15 33023231 33023231 A C GREM1 Missense_Mutation p.I114L 0.55 tolerated(0.27) benign(0.029) TCGA-RP-A695-06 15 34129958 34129961 ACAC TTA RYR3 Frame_Shift_Del p.D3926Vfs*55 0.48 TCGA-RP-A695-06 15 35045212 35045212 A G GJD2 Silent p.L145L 0.63 TCGA-RP-A695-06 15 42107533 42107533 C T MAPKBP1 Missense_Mutation p.T422I 0.23 deleterious(0) benign(0.002) TCGA-RP-A695-06 15 44087180 44087180 C T SERINC4 3'UTR 0.25 TCGA-RP-A695-06 15 44912586 44912586 G A SPG11 Missense_Mutation p.S879F 0.26 deleterious(0.01) probably_damaging(0.919) TCGA-RP-A695-06 15 51993369 51993369 G A SCG3 Missense_Mutation p.E379K 0.19 deleterious_low_confidence(0.01) benign(0.157) TCGA-RP-A695-06 15 52553311 52553311 T A MYO5C Missense_Mutation p.H354L 0.31 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 15 54306529 54306529 G A UNC13C Missense_Mutation p.G477R 0.37 tolerated_low_confidence(0.09) benign(0.01) TCGA-RP-A695-06 15 54435859 54435859 T A UNC13C Missense_Mutation p.S1017T 0.32 tolerated_low_confidence(0.36) benign(0.034) TCGA-RP-A695-06 15 54707184 54707184 C T UNC13C Missense_Mutation p.P1618S 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-RP-A695-06 15 57731779 57731779 C T CGNL1 Missense_Mutation p.P528S 0.41 tolerated(1) benign(0.002) TCGA-RP-A695-06 15 58904090 58904090 C T ADAM10 Missense_Mutation p.G538S 0.19 deleterious(0.04) probably_damaging(0.989) TCGA-RP-A695-06 15 62182382 62182382 G A VPS13C Missense_Mutation p.S3108F 0.21 deleterious(0) possibly_damaging(0.836) TCGA-RP-A695-06 15 62273660 62273660 C T VPS13C Missense_Mutation p.E683K 0.12 deleterious(0) possibly_damaging(0.786) TCGA-RP-A695-06 15 62993337 62993337 C T TLN2 Silent p.D540D 0.07 TCGA-RP-A695-06 15 63948490 63948490 G A HERC1 Nonsense_Mutation p.R3223* 0.20 TCGA-RP-A695-06 15 64020016 64020016 G A HERC1 Missense_Mutation p.A1059V 0.18 probably_damaging(0.978) TCGA-RP-A695-06 15 71535231 71535231 G A THSD4 Silent p.Q236Q 0.18 TCGA-RP-A695-06 15 72105936 72105936 G A CTD-2524L6.3 5'Flank 0.61 TCGA-RP-A695-06 15 72534537 72534537 G A PARP6 Silent p.L556L 0.19 TCGA-RP-A695-06 15 72534538 72534538 G A PARP6 Silent p.F555F 0.19 TCGA-RP-A695-06 15 77407105 77407105 G A PEAK1 Missense_Mutation p.S1545L 0.22 tolerated(0.27) benign(0.006) TCGA-RP-A695-06 15 78295652 78295652 G A TBC1D2B Missense_Mutation p.P857S 0.19 tolerated(0.56) benign(0.3) TCGA-RP-A695-06 15 78474954 78474954 C T ACSBG1 Missense_Mutation p.E250K 0.21 tolerated(0.23) possibly_damaging(0.79) TCGA-RP-A695-06 15 79749347 79749347 G A KIAA1024 Silent p.R286R 0.41 TCGA-RP-A695-06 15 80873678 80873678 C T ARNT2 Silent p.S617S 0.52 TCGA-RP-A695-06 15 83932017 83932017 C T BNC1 Missense_Mutation p.M662I 0.62 tolerated(0.3) benign(0) TCGA-RP-A695-06 15 83932473 83932473 G A BNC1 Silent p.S510S 0.19 TCGA-RP-A695-06 15 84561484 84561484 G A ADAMTSL3 Silent p.G437G 0.46 TCGA-RP-A695-06 15 88679700 88679700 G A NTRK3 Nonsense_Mutation p.Q255* 0.34 TCGA-RP-A695-06 16 10861985 10861985 C T TVP23A 3'UTR 0.12 TCGA-RP-A695-06 16 14947797 14947797 C T NOMO1 Missense_Mutation p.P293S 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 16 15931780 15931780 G A MYH11 Silent p.F110F 0.19 TCGA-RP-A695-06 16 19884066 19884066 G A GPRC5B Silent p.S34S 0.24 TCGA-RP-A695-06 16 20355393 20355393 G A UMOD Silent p.P428P 0.53 TCGA-RP-A695-06 16 2334958 2334958 G A ABCA3 Silent p.D1175D 0.65 TCGA-RP-A695-06 16 23436220 23436220 G A COG7 Silent p.L287L 0.20 TCGA-RP-A695-06 16 23578329 23578330 - G UBFD1 Frame_Shift_Ins p.S255Lfs*8 0.32 TCGA-RP-A695-06 16 27078198 27078198 T C C16orf82 RNA 0.53 TCGA-RP-A695-06 16 27777653 27777653 C T KIAA0556 Missense_Mutation p.T1278I 0.22 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 16 3085482 3085482 C T CCDC64B Missense_Mutation p.G6R 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-RP-A695-06 16 3140061 3140061 C T ZSCAN10 Silent p.Q403Q 0.40 TCGA-RP-A695-06 16 31473780 31473780 C T ARMC5 Silent p.I304I 0.59 TCGA-RP-A695-06 16 31477598 31477598 C T ARMC5 Silent p.S732S 0.48 TCGA-RP-A695-06 16 3304275 3304275 C T MEFV Missense_Mutation p.E265K 0.24 tolerated(0.51) benign(0.004) TCGA-RP-A695-06 16 33647693 33647693 C T RP11-812E19.9 Missense_Mutation p.E2K 0.33 tolerated_low_confidence(0.16) benign(0.109) TCGA-RP-A695-06 16 33647694 33647694 C T RP11-812E19.9 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0.01) benign(0.085) TCGA-RP-A695-06 16 3777725 3777725 G A CREBBP Silent p.G2441G 0.44 TCGA-RP-A695-06 16 49672104 49672104 T C ZNF423 Missense_Mutation p.N320S 0.40 tolerated(0.33) benign(0.101) TCGA-RP-A695-06 16 55880742 55880742 C T CES5A Silent p.T507T 0.20 TCGA-RP-A695-06 16 67709838 67709838 G C GFOD2 Missense_Mutation p.F126L 0.15 deleterious(0) possibly_damaging(0.882) TCGA-RP-A695-06 16 68024790 68024790 G A DPEP2 Silent p.S281S 0.39 TCGA-RP-A695-06 16 70841807 70841807 G A HYDIN Silent p.I5014I 0.31 TCGA-RP-A695-06 16 70916629 70916629 G A HYDIN Silent p.F3383F 0.39 TCGA-RP-A695-06 16 71571180 71571180 C T CHST4 Silent p.I200I 0.14 TCGA-RP-A695-06 16 71898050 71898050 G C ZNF821 Missense_Mutation p.H136Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A695-06 16 77398171 77398171 C T ADAMTS18 Missense_Mutation p.E296K 0.21 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 16 78064443 78064443 G A CLEC3A Missense_Mutation p.G109E 0.16 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 16 78064649 78064649 C T CLEC3A Silent p.L178L 0.09 TCGA-RP-A695-06 16 84050753 84050753 G A SLC38A8 Silent p.F315F 0.42 TCGA-RP-A695-06 16 84188261 84188261 C T DNAAF1 Silent p.I144I 0.58 TCGA-RP-A695-06 16 84203943 84203943 C T DNAAF1 Silent p.P503P 0.49 TCGA-RP-A695-06 16 9857223 9857223 G A GRIN2A Missense_Mutation p.S1393F 0.25 deleterious(0.04) possibly_damaging(0.609) TCGA-RP-A695-06 17 10441093 10441093 G A MYH2 Silent p.F492F 0.34 TCGA-RP-A695-06 17 11593192 11593192 G A DNAH9 Silent p.R1351R 0.46 TCGA-RP-A695-06 17 11696915 11696915 G A DNAH9 Missense_Mutation p.M2719I 0.32 benign(0.058) TCGA-RP-A695-06 17 11711082 11711082 G A DNAH9 Silent p.R2818R 0.35 TCGA-RP-A695-06 17 12656088 12656088 G A MYOCD Missense_Mutation p.E495K 0.36 deleterious(0) benign(0.423) TCGA-RP-A695-06 17 12823075 12823075 G A ARHGAP44 Missense_Mutation p.E131K 0.23 deleterious(0.01) probably_damaging(0.924) TCGA-RP-A695-06 17 17398530 17398530 C T RASD1 Missense_Mutation p.R252Q 0.50 tolerated(0.05) probably_damaging(1) TCGA-RP-A695-06 17 18027833 18027833 C T MYO15A Missense_Mutation p.R1216C 0.37 unknown(0) TCGA-RP-A695-06 17 18154329 18154329 G A FLII Silent p.T533T 0.41 TCGA-RP-A695-06 17 21319735 21319735 G A KCNJ12 Missense_Mutation p.D361N 0.12 deleterious(0.01) benign(0.261) TCGA-RP-A695-06 17 26816315 26816315 C T SLC13A2 Silent p.F62F 0.39 TCGA-RP-A695-06 17 27010768 27010768 C T SUPT6H Silent p.L721L 0.28 TCGA-RP-A695-06 17 27284543 27284543 C T SEZ6 Missense_Mutation p.D773N 0.35 deleterious(0.02) probably_damaging(1) TCGA-RP-A695-06 17 2966275 2966275 G A OR1D5 Silent p.T209T 0.28 TCGA-RP-A695-06 17 3030534 3030534 G A OR1G1 Silent p.F104F 0.38 TCGA-RP-A695-06 17 32647944 32647944 G T CCL8 3'UTR 0.40 TCGA-RP-A695-06 17 33520626 33520626 G A SLC35G3 Missense_Mutation p.S234F 0.43 deleterious(0.03) benign(0.009) TCGA-RP-A695-06 17 33771816 33771816 C T SLFN13 Missense_Mutation p.S295N 0.39 tolerated(0.34) benign(0.324) TCGA-RP-A695-06 17 34431238 34431238 G A CCL4 5'UTR 0.31 TCGA-RP-A695-06 17 36091701 36091701 C T HNF1B Silent p.R310R 0.38 TCGA-RP-A695-06 17 38153790 38153790 T C PSMD3 Missense_Mutation p.F521L 0.36 tolerated(1) benign(0.023) TCGA-RP-A695-06 17 38907262 38907262 C T KRT25 Missense_Mutation p.E301K 0.37 deleterious(0) probably_damaging(0.947) TCGA-RP-A695-06 17 38978773 38978773 C T KRT10 Missense_Mutation p.G22E 0.46 tolerated_low_confidence(0.06) unknown(0) TCGA-RP-A695-06 17 39580846 39580846 C T KRT37 5'Flank 0.32 TCGA-RP-A695-06 17 39635725 39635725 C T KRT35 Silent p.L195L 0.34 TCGA-RP-A695-06 17 39881284 39881284 G T HAP1 Missense_Mutation p.P510H 0.38 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-RP-A695-06 17 39994095 39994095 G A KLHL10 5'UTR 0.49 TCGA-RP-A695-06 17 40864381 40864381 G A EZH1 Nonsense_Mutation p.R443* 0.31 TCGA-RP-A695-06 17 42457382 42457382 C T ITGA2B Missense_Mutation p.M580I 0.35 deleterious(0.02) benign(0.002) TCGA-RP-A695-06 17 43351580 43351580 G A MAP3K14 RNA 0.60 TCGA-RP-A695-06 17 43552514 43552514 G A PLEKHM1 Missense_Mutation p.S292L 0.41 tolerated(1) benign(0.025) TCGA-RP-A695-06 17 43911151 43911151 C T CRHR1 Missense_Mutation p.P363L 0.36 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 17 43911152 43911152 C T CRHR1 Silent p.P363P 0.36 TCGA-RP-A695-06 17 46627680 46627680 C T HOXB3 3'UTR 0.39 TCGA-RP-A695-06 17 47119686 47119686 G A IGF2BP1 Missense_Mutation p.E342K 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-RP-A695-06 17 47122410 47122410 C T IGF2BP1 Missense_Mutation p.P460S 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-RP-A695-06 17 47394653 47394653 A G ZNF652 Silent p.P145P 0.36 TCGA-RP-A695-06 17 47583667 47583667 C T NGFR Missense_Mutation p.T72M 0.15 deleterious(0) probably_damaging(0.992) TCGA-RP-A695-06 17 4859292 4859292 C T ENO3 Silent p.F307F 0.29 TCGA-RP-A695-06 17 48633035 48633035 C T SPATA20 3'UTR 0.33 TCGA-RP-A695-06 17 5085329 5085329 G A ZNF594 Silent p.T741T 0.31 TCGA-RP-A695-06 17 56247468 56247468 G A OR4D2 Missense_Mutation p.G151E 0.39 deleterious(0) probably_damaging(0.956) TCGA-RP-A695-06 17 60759730 60759730 C T MRC2 Missense_Mutation p.L980F 0.20 tolerated(0.71) possibly_damaging(0.463) TCGA-RP-A695-06 17 61996173 61996173 T C GH1 5'UTR 0.41 TCGA-RP-A695-06 17 62080892 62080892 G A C17orf72 3'Flank 0.29 TCGA-RP-A695-06 17 62500818 62500818 G A DDX5 Missense_Mutation p.P63S 0.31 tolerated(0.08) benign(0.175) TCGA-RP-A695-06 17 66898938 66898938 C T ABCA8 Missense_Mutation p.E854K 0.35 deleterious(0.03) benign(0.04) TCGA-RP-A695-06 17 71334817 71334817 G A SDK2 Missense_Mutation p.P2143L 0.33 deleterious_low_confidence(0.01) benign(0.02) TCGA-RP-A695-06 17 71420182 71420182 G A SDK2 Missense_Mutation p.R545C 0.36 deleterious(0) probably_damaging(0.988) TCGA-RP-A695-06 17 72959143 72959143 G A HID1 Silent p.L141L 0.29 TCGA-RP-A695-06 17 7320605 7320605 C T NLGN2 Silent p.F665F 0.33 TCGA-RP-A695-06 17 73569692 73569692 G A LLGL2 Silent p.K952K 0.36 TCGA-RP-A695-06 17 73898108 73898108 G A MRPL38 Silent p.L125L 0.45 TCGA-RP-A695-06 17 73919479 73919479 G A FBF1 Silent p.P389P 0.48 TCGA-RP-A695-06 17 74625252 74625252 G A ST6GALNAC1 Missense_Mutation p.P225S 0.27 benign(0.164) TCGA-RP-A695-06 17 7796822 7796822 C T CHD3 Missense_Mutation p.P302L 0.39 benign(0.307) TCGA-RP-A695-06 17 77984373 77984373 G A TBC1D16 Missense_Mutation p.S122F 0.39 tolerated(0.2) benign(0.001) TCGA-RP-A695-06 17 7809173 7809173 G A CHD3 Splice_Site p.X1468_splice 0.33 TCGA-RP-A695-06 17 78221940 78221940 C T SLC26A11 Silent p.L436L 0.42 TCGA-RP-A695-06 17 78727930 78727930 C T RPTOR Missense_Mutation p.P259S 0.31 deleterious(0) probably_damaging(0.993) TCGA-RP-A695-06 17 7942427 7942427 G A ALOX15B 5'UTR 0.33 TCGA-RP-A695-06 17 80037375 80037375 G A FASN Missense_Mutation p.A2419V 0.32 deleterious(0.04) probably_damaging(0.916) TCGA-RP-A695-06 17 80045588 80045588 G A FASN Nonsense_Mutation p.Q1006* 0.28 TCGA-RP-A695-06 17 80320328 80320328 G A TEX19 Missense_Mutation p.G101E 0.32 tolerated(1) benign(0.04) TCGA-RP-A695-06 17 9674911 9674911 G A DHRS7C Missense_Mutation p.P278L 0.38 tolerated(1) possibly_damaging(0.493) TCGA-RP-A695-06 18 21523886 21523886 A G LAMA3 Missense_Mutation p.K3054R 0.44 benign(0.068) TCGA-RP-A695-06 18 22804972 22804972 G A ZNF521 Silent p.S970S 0.44 TCGA-RP-A695-06 18 24496640 24496640 G A CHST9 Silent p.F305F 0.40 TCGA-RP-A695-06 18 28739450 28739450 G A DSC1 Nonsense_Mutation p.R36* 0.42 TCGA-RP-A695-06 18 29040924 29040924 G A DSG3 Silent p.Q271Q 0.20 TCGA-RP-A695-06 18 2934388 2934388 C A LPIN2 Missense_Mutation p.G410V 0.16 tolerated(0.44) benign(0) TCGA-RP-A695-06 18 3149150 3149150 T C MYOM1 Silent p.E631E 0.35 TCGA-RP-A695-06 18 42531530 42531530 C T SETBP1 Missense_Mutation p.P742L 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A695-06 18 42533069 42533069 C T SETBP1 Missense_Mutation p.P1255L 0.53 tolerated(0.18) benign(0.004) TCGA-RP-A695-06 18 47431082 47431082 G A MYO5B Missense_Mutation p.A844V 0.26 deleterious(0) possibly_damaging(0.898) TCGA-RP-A695-06 18 51729392 51729392 C T MBD2 Intron 0.20 TCGA-RP-A695-06 18 52556543 52556543 G A RAB27B Missense_Mutation p.E186K 0.42 tolerated(0.12) probably_damaging(0.989) TCGA-RP-A695-06 18 52609983 52609983 C T CCDC68 Missense_Mutation p.D14N 0.39 tolerated(0.31) benign(0.002) TCGA-RP-A695-06 18 5292012 5292012 G A ZBTB14 Silent p.F65F 0.15 TCGA-RP-A695-06 18 5416090 5416090 G C EPB41L3 Silent p.S598S 0.45 TCGA-RP-A695-06 18 6138238 6138238 C T L3MBTL4 Missense_Mutation p.R385Q 0.18 tolerated(0.21) benign(0.116) TCGA-RP-A695-06 18 9360030 9360030 T G TWSG1 Missense_Mutation p.C62G 0.11 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 19 10800137 10800137 C T ILF3 3'UTR 0.32 TCGA-RP-A695-06 19 11534590 11534590 T A CCDC151 Missense_Mutation p.I358F 0.35 tolerated(0.18) possibly_damaging(0.476) TCGA-RP-A695-06 19 13873225 13873225 C T CCDC130 Missense_Mutation p.A229V 0.45 deleterious(0.01) possibly_damaging(0.744) TCGA-RP-A695-06 19 14069995 14069995 C T DCAF15 Missense_Mutation p.S308F 0.45 tolerated_low_confidence(0.06) benign(0.002) TCGA-RP-A695-06 19 1465736 1465736 G A APC2 Silent p.Q812Q 0.38 TCGA-RP-A695-06 19 15918274 15918274 C T OR10H1 Missense_Mutation p.D192N 0.38 tolerated(0.63) benign(0.001) TCGA-RP-A695-06 19 16319956 16319956 T C AP1M1 Missense_Mutation p.F172L 0.41 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 19 17394555 17394555 G T ANKLE1 Missense_Mutation p.D328Y 0.39 deleterious(0.01) possibly_damaging(0.906) TCGA-RP-A695-06 19 18004608 18004608 G A SLC5A5 Silent p.K618K 0.42 TCGA-RP-A695-06 19 18004609 18004609 G A SLC5A5 Missense_Mutation p.E619K 0.38 deleterious(0.01) benign(0.275) TCGA-RP-A695-06 19 18779856 18779856 C T KLHL26 Missense_Mutation p.S550L 0.29 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 19 21240596 21240596 T A ZNF430 Missense_Mutation p.F494L 0.39 deleterious(0.01) possibly_damaging(0.847) TCGA-RP-A695-06 19 21366710 21366710 C T ZNF431 Missense_Mutation p.T535I 0.46 tolerated(0.07) possibly_damaging(0.829) TCGA-RP-A695-06 19 22154784 22154784 C T ZNF208 Missense_Mutation p.E1018K 0.37 tolerated(0.99) benign(0.001) TCGA-RP-A695-06 19 22155546 22155546 G A ZNF208 Missense_Mutation p.L764F 0.32 tolerated(0.06) probably_damaging(0.968) TCGA-RP-A695-06 19 22155547 22155547 G A ZNF208 Silent p.T763T 0.33 TCGA-RP-A695-06 19 22270884 22270884 T C ZNF257 Missense_Mutation p.L111S 0.38 deleterious(0.01) benign(0.024) TCGA-RP-A695-06 19 22363528 22363528 G A ZNF676 Missense_Mutation p.H331Y 0.11 deleterious(0) probably_damaging(0.984) TCGA-RP-A695-06 19 22574928 22574928 C T ZNF98 Missense_Mutation p.R370K 0.27 tolerated(0.35) benign(0.192) TCGA-RP-A695-06 19 22942287 22942287 C T ZNF99 Missense_Mutation p.G142R 0.19 tolerated(0.32) benign(0.368) TCGA-RP-A695-06 19 35504489 35504489 C T GRAMD1A Missense_Mutation p.T255I 0.39 deleterious(0.03) benign(0.045) TCGA-RP-A695-06 19 36004293 36004293 C T DMKN Missense_Mutation p.E29K 0.34 tolerated(0.08) possibly_damaging(0.717) TCGA-RP-A695-06 19 36357355 36357355 C T KIRREL2 Silent p.F696F 0.38 TCGA-RP-A695-06 19 36370381 36370381 C T APLP1 3'UTR 0.37 TCGA-RP-A695-06 19 37101627 37101627 C T ZNF382 Missense_Mutation p.P72L 0.34 tolerated(0.3) benign(0.133) TCGA-RP-A695-06 19 37880220 37880220 C T ZNF527 Silent p.F423F 0.39 TCGA-RP-A695-06 19 38077620 38077620 G A ZNF571 5'UTR 0.37 TCGA-RP-A695-06 19 3813832 3813832 G A ZFR2 Missense_Mutation p.P743L 0.45 tolerated(0.05) benign(0.275) TCGA-RP-A695-06 19 38817436 38817436 C T KCNK6 Silent p.L176L 0.31 TCGA-RP-A695-06 19 39058424 39058424 G A RYR1 Missense_Mutation p.G4509E 0.31 unknown(0) TCGA-RP-A695-06 19 40222086 40222086 C T CLC Silent p.V121V 0.40 TCGA-RP-A695-06 19 4054881 4054881 G A ZBTB7A Missense_Mutation p.P117L 0.31 deleterious(0) possibly_damaging(0.869) TCGA-RP-A695-06 19 40698547 40698547 G T MAP3K10 Silent p.V203V 0.22 TCGA-RP-A695-06 19 40901695 40901695 G A PRX Missense_Mutation p.P855L 0.40 deleterious(0) possibly_damaging(0.851) TCGA-RP-A695-06 19 41120250 41120250 G C LTBP4 Missense_Mutation p.A971P 0.27 deleterious(0.02) probably_damaging(0.983) TCGA-RP-A695-06 19 41512910 41512910 C T CYP2B6 Silent p.F195F 0.42 TCGA-RP-A695-06 19 43097907 43097907 C T CEACAM8 Silent p.G70G 0.38 TCGA-RP-A695-06 19 43420310 43420310 C T PSG6 Missense_Mutation p.G132R 0.32 tolerated(0.52) benign(0.169) TCGA-RP-A695-06 19 43428839 43428839 G A PSG7 3'UTR 0.21 TCGA-RP-A695-06 19 43530525 43530525 G A PSG11 5'UTR 0.33 TCGA-RP-A695-06 19 43585234 43585234 G A PSG2 Missense_Mutation p.H77Y 0.33 tolerated(0.09) benign(0.142) TCGA-RP-A695-06 19 43865642 43865642 C T CD177 3'UTR 0.45 TCGA-RP-A695-06 19 44377368 44377368 C T ZNF404 Missense_Mutation p.G333E 0.38 deleterious(0.02) probably_damaging(0.921) TCGA-RP-A695-06 19 44500589 44500589 C T ZNF155 Missense_Mutation p.H205Y 0.37 deleterious(0) probably_damaging(0.99) TCGA-RP-A695-06 19 44591126 44591126 C T ZNF284 Missense_Mutation p.R499C 0.38 deleterious(0.05) possibly_damaging(0.878) TCGA-RP-A695-06 19 44662420 44662420 T G ZNF234 3'UTR 0.50 TCGA-RP-A695-06 19 46289622 46289622 G A DMWD Missense_Mutation p.P378S 0.36 deleterious(0.04) probably_damaging(0.96) TCGA-RP-A695-06 19 47259901 47259901 C T FKRP Silent p.V398V 0.48 TCGA-RP-A695-06 19 47935671 47935671 C T SLC8A2 Silent p.R714R 0.36 TCGA-RP-A695-06 19 47951087 47951087 T A SLC8A2 Missense_Mutation p.E581V 0.37 tolerated(0.32) possibly_damaging(0.722) TCGA-RP-A695-06 19 48254252 48254252 C T GLTSCR2 Silent p.P162P 0.50 TCGA-RP-A695-06 19 4839146 4839146 G A PLIN3 3'UTR 0.41 TCGA-RP-A695-06 19 48800229 48800229 C T CCDC114 3'UTR 0.19 TCGA-RP-A695-06 19 48848458 48848458 C T TMEM143 Missense_Mutation p.A175T 0.32 tolerated(0.07) possibly_damaging(0.483) TCGA-RP-A695-06 19 4930757 4930757 G A MIR4747 5'Flank 0.39 TCGA-RP-A695-06 19 5047525 5047525 C T KDM4B Silent p.I157I 0.38 TCGA-RP-A695-06 19 51129186 51129186 T C SYT3 Missense_Mutation p.N457S 0.39 deleterious(0.02) benign(0.057) TCGA-RP-A695-06 19 51192473 51192473 G A SHANK1 Silent p.F676F 0.36 TCGA-RP-A695-06 19 53668485 53668485 G A ZNF665 Missense_Mutation p.H420Y 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-RP-A695-06 19 53958719 53958719 C T ZNF761 RNA 0.24 TCGA-RP-A695-06 19 54214279 54214279 G A MIR524 RNA 0.37 TCGA-RP-A695-06 19 54675647 54675647 C T TMC4 Silent p.R101R 0.37 TCGA-RP-A695-06 19 54745696 54745696 C T LILRA6 Silent p.G138G 0.20 TCGA-RP-A695-06 19 54783229 54783229 G A LILRB2 Missense_Mutation p.P210L 0.39 deleterious(0.03) probably_damaging(1) TCGA-RP-A695-06 19 55148444 55148444 G A LILRB1 3'UTR 0.54 TCGA-RP-A695-06 19 55221621 55221621 G A AC098784.2 3'Flank 0.10 TCGA-RP-A695-06 19 55263168 55263168 C T KIR2DL3 Silent p.L261L 0.83 TCGA-RP-A695-06 19 55341741 55341741 C T KIR3DL1 3'UTR 0.32 TCGA-RP-A695-06 19 55377343 55377343 C T KIR3DL2 Missense_Mutation p.R362C 0.33 tolerated(0.06) benign(0.009) TCGA-RP-A695-06 19 55494184 55494184 G A NLRP2 Missense_Mutation p.G373E 0.41 tolerated(1) benign(0.03) TCGA-RP-A695-06 19 56163842 56163842 C G CCDC106 Silent p.G191G 0.42 TCGA-RP-A695-06 19 56369416 56369416 C T NLRP4 Silent p.I219I 0.28 TCGA-RP-A695-06 19 56369596 56369596 C T NLRP4 Silent p.I279I 0.40 TCGA-RP-A695-06 19 56416390 56416390 C T NLRP13 Missense_Mutation p.G846R 0.38 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 19 56520207 56520207 G A NLRP5 Missense_Mutation p.E166K 0.14 tolerated(0.77) benign(0.004) TCGA-RP-A695-06 19 56539287 56539287 C T NLRP5 Missense_Mutation p.A563V 0.39 tolerated(0.18) benign(0.11) TCGA-RP-A695-06 19 56552434 56552434 C T NLRP5 Missense_Mutation p.P978L 0.35 deleterious(0) possibly_damaging(0.758) TCGA-RP-A695-06 19 56736227 56736227 C T ZSCAN5A Silent p.R63R 0.33 TCGA-RP-A695-06 19 57022943 57022943 G A ZNF471 Translation_Start_Site p.M1? 0.32 tolerated(0.05) benign(0.107) TCGA-RP-A695-06 19 58490387 58490387 G A ZNF606 Missense_Mutation p.A554V 0.31 tolerated(0.14) probably_damaging(0.996) TCGA-RP-A695-06 19 58579609 58579609 C T ZNF135 Missense_Mutation p.S610F 0.40 deleterious(0.02) possibly_damaging(0.894) TCGA-RP-A695-06 19 58966440 58966440 C T ZNF324B Intron 0.25 TCGA-RP-A695-06 19 6534961 6534961 C T TNFSF9 Missense_Mutation p.H217Y 0.19 deleterious(0.03) possibly_damaging(0.631) TCGA-RP-A695-06 19 6742981 6742981 C T TRIP10 Silent p.F67F 0.27 TCGA-RP-A695-06 19 6746479 6746479 A T TRIP10 Missense_Mutation p.D334V 0.18 deleterious(0) probably_damaging(0.992) TCGA-RP-A695-06 19 7152774 7152774 A T INSR Missense_Mutation p.F732I 0.33 deleterious(0.02) benign(0.259) TCGA-RP-A695-06 19 7805983 7805983 G A CD209 3'UTR 0.33 TCGA-RP-A695-06 19 7808049 7808049 C T CD209 Nonsense_Mutation p.W364* 0.34 TCGA-RP-A695-06 19 8387731 8387731 C T KANK3 Missense_Mutation p.V820I 0.35 deleterious_low_confidence(0.03) benign(0) TCGA-RP-A695-06 19 8436016 8436016 G A ANGPTL4 Silent p.A246A 0.24 TCGA-RP-A695-06 19 9014700 9014700 C T MUC16 Missense_Mutation p.E12759K 0.40 possibly_damaging(0.545) TCGA-RP-A695-06 19 9047714 9047714 G A MUC16 Missense_Mutation p.A11306V 0.39 benign(0.092) TCGA-RP-A695-06 19 9067330 9067330 G A MUC16 Missense_Mutation p.H6706Y 0.35 unknown(0) TCGA-RP-A695-06 19 9070709 9070709 G A MUC16 Silent p.I5579I 0.36 TCGA-RP-A695-06 19 9213301 9213301 C T OR7G2 Missense_Mutation p.G228S 0.38 deleterious(0.03) possibly_damaging(0.596) TCGA-RP-A695-06 19 9362573 9362573 C T OR7E24 Missense_Mutation p.S285F 0.22 deleterious(0.04) benign(0.443) TCGA-RP-A695-06 19 9407453 9407453 G A ZNF699 Silent p.S209S 0.31 TCGA-RP-A695-06 19 9407454 9407454 G A ZNF699 Missense_Mutation p.S209F 0.32 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 19 9452379 9452379 C T ZNF559 Silent p.N84N 0.35 TCGA-RP-A695-06 19 9965150 9965150 C T OLFM2 Silent p.R359R 0.36 TCGA-RP-A695-06 19 9965151 9965151 C G OLFM2 Missense_Mutation p.R359P 0.36 deleterious(0.01) possibly_damaging(0.587) TCGA-RP-A695-06 1 104160212 104160212 G A AMY2A Silent p.K50K 0.53 TCGA-RP-A695-06 1 11116706 11116706 G A SRM Nonsense_Mutation p.Q164* 0.32 TCGA-RP-A695-06 1 112999892 112999892 C T CTTNBP2NL Missense_Mutation p.P593L 0.57 deleterious(0) benign(0.024) TCGA-RP-A695-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.61 tolerated(0.06) benign(0.006) TCGA-RP-A695-06 1 118558676 118558676 C T SPAG17 Missense_Mutation p.G1400E 0.67 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 1 12884919 12884919 G A PRAMEF11 Silent p.L398L 0.18 TCGA-RP-A695-06 1 12941798 12941798 G A PRAMEF4 Missense_Mutation p.S251F 0.18 tolerated(0.07) benign(0.009) TCGA-RP-A695-06 1 13001047 13001047 C T PRAMEF6 Silent p.V212V 0.21 TCGA-RP-A695-06 1 142713090 142713090 G A RP11-417J8.6 RNA 0.36 TCGA-RP-A695-06 1 145115989 145115989 G A SEC22B RNA 0.10 TCGA-RP-A695-06 1 145293372 145293372 C T NBPF10 5'UTR 0.16 TCGA-RP-A695-06 1 145416921 145416921 G A HFE2 Nonsense_Mutation p.W422* 0.25 TCGA-RP-A695-06 1 149784913 149784913 C T HIST2H3D Silent p.T108T 0.50 TCGA-RP-A695-06 1 150444320 150444320 C T RPRD2 Missense_Mutation p.P966S 0.12 deleterious_low_confidence(0.03) benign(0.338) TCGA-RP-A695-06 1 150921738 150921738 C T SETDB1 Nonsense_Mutation p.Q470* 0.10 TCGA-RP-A695-06 1 151666116 151666116 C T SNX27 3'UTR 0.23 TCGA-RP-A695-06 1 152127678 152127678 C T RPTN Missense_Mutation p.G633R 0.30 tolerated(0.55) benign(0.015) TCGA-RP-A695-06 1 152192414 152192414 C T HRNR Missense_Mutation p.G564D 0.12 unknown(0) TCGA-RP-A695-06 1 152192972 152192972 C T HRNR Missense_Mutation p.G378E 0.19 unknown(0) TCGA-RP-A695-06 1 152552269 152552269 G A LCE3D Silent p.S48S 0.29 TCGA-RP-A695-06 1 152552270 152552270 G A LCE3D Missense_Mutation p.S48F 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-RP-A695-06 1 152595494 152595494 G A LCE3A Missense_Mutation p.S29F 0.62 deleterious_low_confidence(0) unknown(0) TCGA-RP-A695-06 1 152733201 152733201 C T KPRP Silent p.L379L 0.43 TCGA-RP-A695-06 1 152777501 152777501 G A LCE1C 3'UTR 0.22 TCGA-RP-A695-06 1 152882710 152882710 G A IVL Missense_Mutation p.G146E 0.47 tolerated_low_confidence(0.42) unknown(0) TCGA-RP-A695-06 1 152884074 152884074 G A IVL 3'UTR 0.22 TCGA-RP-A695-06 1 152884075 152884075 G A IVL 3'UTR 0.24 TCGA-RP-A695-06 1 153314241 153314241 G A PGLYRP4 Missense_Mutation p.P163S 0.37 deleterious(0.03) benign(0.284) TCGA-RP-A695-06 1 154026837 154026837 G A NUP210L Missense_Mutation p.S1117F 0.34 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 1 154420641 154420641 C T IL6R Silent p.P330P 0.42 TCGA-RP-A695-06 1 154705591 154705591 T C KCNN3 Missense_Mutation p.N493S 0.10 deleterious(0.04) possibly_damaging(0.647) TCGA-RP-A695-06 1 155209783 155209783 G A GBA Silent p.P67P 0.43 TCGA-RP-A695-06 1 155209784 155209784 G A GBA Missense_Mutation p.P67L 0.45 deleterious(0) benign(0.152) TCGA-RP-A695-06 1 155291925 155291925 G A RUSC1 Missense_Mutation p.V121I 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-RP-A695-06 1 156816345 156816345 C T INSRR Silent p.Q592Q 0.12 TCGA-RP-A695-06 1 157516904 157516904 C T FCRL5 Missense_Mutation p.G46R 0.32 tolerated(0.07) benign(0.411) TCGA-RP-A695-06 1 157666837 157666837 C T FCRL3 Intron 0.32 TCGA-RP-A695-06 1 158517316 158517316 A C OR6Y1 Missense_Mutation p.C194G 0.26 deleterious(0) possibly_damaging(0.794) TCGA-RP-A695-06 1 158653262 158653262 G A SPTA1 Missense_Mutation p.L97F 0.39 tolerated(1) benign(0.005) TCGA-RP-A695-06 1 158735928 158735928 G A OR6N1 Missense_Mutation p.P182L 0.12 tolerated(0.4) benign(0.398) TCGA-RP-A695-06 1 158812067 158812067 G A MNDA Missense_Mutation p.E42K 0.30 tolerated(0.23) benign(0.285) TCGA-RP-A695-06 1 159558289 159558289 G A APCS Missense_Mutation p.E155K 0.53 deleterious(0.03) possibly_damaging(0.899) TCGA-RP-A695-06 1 160460375 160460375 C T SLAMF6 Silent p.R249R 0.25 TCGA-RP-A695-06 1 16059155 16059155 C A PLEKHM2 Missense_Mutation p.L952M 0.15 deleterious(0.01) benign(0.059) TCGA-RP-A695-06 1 161200594 161200594 C T NR1I3 Intron 0.34 TCGA-RP-A695-06 1 161600929 161600929 C T FCGR3B Missense_Mutation p.G22R 0.12 deleterious(0.02) probably_damaging(0.981) TCGA-RP-A695-06 1 169439400 169439400 C T SLC19A2 Missense_Mutation p.V278I 0.15 tolerated(0.08) benign(0.12) TCGA-RP-A695-06 1 169576207 169576207 G A SELP Missense_Mutation p.S500F 0.16 deleterious(0) possibly_damaging(0.712) TCGA-RP-A695-06 1 170508449 170508449 C A GORAB Missense_Mutation p.Q79K 0.15 tolerated(0.12) benign(0.046) TCGA-RP-A695-06 1 171168549 171168549 G A FMO2 Silent p.E183E 0.36 TCGA-RP-A695-06 1 176563764 176563764 C T PAPPA2 Missense_Mutation p.L342F 0.52 deleterious(0) probably_damaging(0.996) TCGA-RP-A695-06 1 176740150 176740150 C T PAPPA2 Missense_Mutation p.P1517S 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 1 177225096 177225096 G A BRINP2 Missense_Mutation p.R104K 0.23 tolerated(0.26) benign(0.03) TCGA-RP-A695-06 1 177245530 177245530 G A BRINP2 Silent p.Q324Q 0.14 TCGA-RP-A695-06 1 179604894 179604894 C T TDRD5 Silent p.L464L 0.51 TCGA-RP-A695-06 1 181725125 181725125 G A CACNA1E Missense_Mutation p.M1341I 0.56 tolerated(0.1) benign(0.284) TCGA-RP-A695-06 1 181767535 181767535 C T CACNA1E Silent p.L2169L 0.41 TCGA-RP-A695-06 1 185964010 185964010 T C HMCN1 Missense_Mutation p.I1190T 0.14 benign(0.111) TCGA-RP-A695-06 1 186114553 186114553 C T HMCN1 Missense_Mutation p.P4762L 0.23 probably_damaging(0.997) TCGA-RP-A695-06 1 198700854 198700854 A G PTPRC Missense_Mutation p.Q658R 0.05 deleterious(0) probably_damaging(0.996) TCGA-RP-A695-06 1 201035068 201035068 C T CACNA1S Silent p.V917V 0.29 TCGA-RP-A695-06 1 201197630 201197630 C T IGFN1 3'UTR 0.56 TCGA-RP-A695-06 1 201297899 201297899 G A PKP1 Missense_Mutation p.D727N 0.20 tolerated(0.39) benign(0.01) TCGA-RP-A695-06 1 201333435 201333435 G A TNNT2 Silent p.N150N 0.19 TCGA-RP-A695-06 1 203040861 203040861 C T PPFIA4 Silent p.A616A 0.50 TCGA-RP-A695-06 1 204588256 204588256 C T LRRN2 Missense_Mutation p.E289K 0.15 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 1 205884131 205884131 G A SLC26A9 Silent p.S851S 0.61 TCGA-RP-A695-06 1 20982166 20982166 T A DDOST Intron 0.23 TCGA-RP-A695-06 1 209933708 209933708 G A TRAF3IP3 Silent p.R108R 0.55 TCGA-RP-A695-06 1 215820984 215820984 C T USH2A Missense_Mutation p.G4891R 0.41 benign(0.03) TCGA-RP-A695-06 1 215821889 215821889 G A USH2A Missense_Mutation p.P4855S 0.64 probably_damaging(0.993) TCGA-RP-A695-06 1 220273854 220273854 G A IARS2 Missense_Mutation p.R138Q 0.57 deleterious(0) probably_damaging(0.954) TCGA-RP-A695-06 1 224922315 224922315 T G CNIH3 Missense_Mutation p.V121G 0.58 deleterious(0.01) benign(0.004) TCGA-RP-A695-06 1 228003822 228003822 C T PRSS38 Silent p.I60I 0.13 TCGA-RP-A695-06 1 228033709 228033709 G A PRSS38 Missense_Mutation p.G261R 0.19 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 1 22903137 22903137 C T EPHA8 Missense_Mutation p.S196F 0.16 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 1 233807129 233807129 G A KCNK1 Silent p.E288E 0.66 TCGA-RP-A695-06 1 237993849 237993849 G A RYR2 Missense_Mutation p.G4892E 0.62 possibly_damaging(0.819) TCGA-RP-A695-06 1 24421962 24421962 C T MYOM3 Missense_Mutation p.D254N 0.51 deleterious(0.04) benign(0.004) TCGA-RP-A695-06 1 247040307 247040307 C T AHCTF1 Missense_Mutation p.R970H 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-RP-A695-06 1 247081569 247081569 C T AHCTF1 Missense_Mutation p.R44H 0.12 tolerated(0.8) benign(0.009) TCGA-RP-A695-06 1 247463970 247463970 G A ZNF496 Missense_Mutation p.R539W 0.17 deleterious(0.01) possibly_damaging(0.546) TCGA-RP-A695-06 1 247588542 247588542 G A NLRP3 Silent p.K599K 0.14 TCGA-RP-A695-06 1 247752347 247752347 T A OR2G2 Nonsense_Mutation p.L229* 0.19 TCGA-RP-A695-06 1 247769053 247769053 C T OR2G3 Missense_Mutation p.H56Y 0.45 deleterious(0.01) possibly_damaging(0.582) TCGA-RP-A695-06 1 247769532 247769532 C T OR2G3 Silent p.S215S 0.11 TCGA-RP-A695-06 1 247920862 247920862 G A OR1C1 Missense_Mutation p.P283S 0.12 deleterious(0.01) possibly_damaging(0.874) TCGA-RP-A695-06 1 247921301 247921301 C T OR1C1 Missense_Mutation p.M136I 0.16 deleterious(0.03) benign(0.006) TCGA-RP-A695-06 1 248004278 248004278 C T OR11L1 Silent p.R307R 0.54 TCGA-RP-A695-06 1 248201602 248201602 C T OR2L2 Silent p.F11F 0.65 TCGA-RP-A695-06 1 248224664 248224664 G A OR2L3 Missense_Mutation p.M227I 0.48 deleterious(0.05) benign(0.17) TCGA-RP-A695-06 1 248569599 248569599 G A OR2T1 Missense_Mutation p.D102N 0.16 deleterious(0.05) probably_damaging(1) TCGA-RP-A695-06 1 248813962 248813962 G A OR2T27 Missense_Mutation p.S75F 0.23 tolerated(0.09) probably_damaging(0.982) TCGA-RP-A695-06 1 25775362 25775362 C T TMEM57 Missense_Mutation p.P96S 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-RP-A695-06 1 26085091 26085091 G A MAN1C1 Nonsense_Mutation p.W313* 0.45 TCGA-RP-A695-06 1 26737315 26737315 C T LIN28A 5'UTR 0.20 TCGA-RP-A695-06 1 28169742 28169742 C T PPP1R8 Missense_Mutation p.L180F 0.21 deleterious(0.01) possibly_damaging(0.852) TCGA-RP-A695-06 1 34006851 34006851 G A CSMD2 Silent p.F2968F 0.54 TCGA-RP-A695-06 1 3698121 3698121 G A LRRC47 Silent p.A486A 0.17 TCGA-RP-A695-06 1 3732016 3732016 G A CEP104 Missense_Mutation p.P910S 0.21 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 1 38260359 38260359 G A MANEAL Missense_Mutation p.E169K 0.09 tolerated(0.67) benign(0.003) TCGA-RP-A695-06 1 41976683 41976683 G A HIVEP3 Silent p.A2220A 0.65 TCGA-RP-A695-06 1 43042758 43042758 C T CCDC30 Missense_Mutation p.T308M 0.14 tolerated(0.07) benign(0.232) TCGA-RP-A695-06 1 43898005 43898005 C T SZT2 Silent p.F1722F 0.18 TCGA-RP-A695-06 1 47403767 47403767 C T CYP4A11 Missense_Mutation p.E80K 0.16 tolerated(0.2) benign(0.03) TCGA-RP-A695-06 1 53153412 53153412 G A COA7 Nonsense_Mutation p.Q226* 0.65 TCGA-RP-A695-06 1 53555603 53555603 G A SLC1A7 Silent p.I410I 0.20 TCGA-RP-A695-06 1 53995504 53995504 G A GLIS1 Missense_Mutation p.S306F 0.61 deleterious(0) probably_damaging(0.991) TCGA-RP-A695-06 1 62672751 62672751 G A L1TD1 Missense_Mutation p.E151K 0.55 tolerated(0.06) unknown(0) TCGA-RP-A695-06 1 6534223 6534223 G A PLEKHG5 Silent p.A226A 0.42 TCGA-RP-A695-06 1 6534224 6534224 G A PLEKHG5 Missense_Mutation p.A226V 0.42 tolerated(0.1) benign(0.07) TCGA-RP-A695-06 1 71544351 71544351 G A ZRANB2 Nonsense_Mutation p.R33* 0.51 TCGA-RP-A695-06 1 75055399 75055399 C T C1orf173 Missense_Mutation p.E698K 0.59 tolerated(0.08) benign(0.287) TCGA-RP-A695-06 1 75740650 75740650 G A SLC44A5 Missense_Mutation p.P85S 0.30 tolerated(0.25) benign(0.045) TCGA-RP-A695-06 1 79470877 79470877 G A ELTD1 Missense_Mutation p.S17F 0.61 tolerated_low_confidence(0.32) benign(0.372) TCGA-RP-A695-06 1 82409070 82409070 G A LPHN2 Missense_Mutation p.G272D 0.59 deleterious(0) probably_damaging(0.995) TCGA-RP-A695-06 1 82409441 82409441 G A LPHN2 Missense_Mutation p.D396N 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A695-06 1 85279496 85279496 G A LPAR3 3'UTR 0.67 TCGA-RP-A695-06 1 86499593 86499593 T C COL24A1 Missense_Mutation p.D655G 0.15 deleterious(0.01) benign(0.172) TCGA-RP-A695-06 1 87043668 87043668 C T CLCA4 Missense_Mutation p.R679W 0.62 tolerated(0.26) benign(0.003) TCGA-RP-A695-06 1 87043678 87043678 G A CLCA4 Missense_Mutation p.G682E 0.12 deleterious(0.04) probably_damaging(0.931) TCGA-RP-A695-06 1 93312881 93312881 A C FAM69A Silent p.V111V 0.10 TCGA-RP-A695-06 1 94467346 94467346 C T ABCA4 Intron 0.14 TCGA-RP-A695-06 1 97981389 97981389 G A DPYD Missense_Mutation p.P545S 0.16 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 20 10279935 10279935 G A SNAP25 Missense_Mutation p.E143K 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-RP-A695-06 20 10602048 10602048 T C SLX4IP Silent p.N164N 0.20 TCGA-RP-A695-06 20 14306575 14306575 A T FLRT3 Missense_Mutation p.N526K 0.14 tolerated(0.27) benign(0.01) TCGA-RP-A695-06 20 20033106 20033106 G A CRNKL1 Missense_Mutation p.P122S 0.14 deleterious_low_confidence(0.01) benign(0.001) TCGA-RP-A695-06 20 2290950 2290950 C T TGM3 Missense_Mutation p.P103L 0.20 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 20 23549013 23549013 C T CST9L Silent p.L25L 0.40 TCGA-RP-A695-06 20 2411561 2411561 G A TGM6 Missense_Mutation p.G619R 0.25 tolerated(0.23) probably_damaging(0.925) TCGA-RP-A695-06 20 2411562 2411562 G A TGM6 Missense_Mutation p.G619E 0.25 tolerated(0.07) possibly_damaging(0.733) TCGA-RP-A695-06 20 24565507 24565507 G A SYNDIG1 Missense_Mutation p.D166N 0.48 deleterious(0) probably_damaging(0.912) TCGA-RP-A695-06 20 25057171 25057171 G A VSX1 Missense_Mutation p.S275F 0.45 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 20 25596961 25596961 G A NANP Missense_Mutation p.A116V 0.45 tolerated(0.15) benign(0.125) TCGA-RP-A695-06 20 30419842 30419842 C T MYLK2 Missense_Mutation p.P538L 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A695-06 20 3129640 3129640 C T FASTKD5 Missense_Mutation p.R26Q 0.24 tolerated(1) benign(0.001) TCGA-RP-A695-06 20 31671187 31671187 C T BPIFB4 Missense_Mutation p.P62S 0.21 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-RP-A695-06 20 33575385 33575385 G A MYH7B Missense_Mutation p.M433I 0.22 probably_damaging(0.982) TCGA-RP-A695-06 20 33875229 33875229 G A FAM83C Silent p.P451P 0.29 TCGA-RP-A695-06 20 36776363 36776363 C T TGM2 Missense_Mutation p.M227I 0.29 deleterious(0) probably_damaging(0.967) TCGA-RP-A695-06 20 40713347 40713347 C T PTPRT Missense_Mutation p.E1371K 0.32 deleterious(0.01) benign(0.001) TCGA-RP-A695-06 20 40713348 40713348 C T PTPRT Silent p.R1370R 0.32 TCGA-RP-A695-06 20 42169609 42169609 G A L3MBTL1 Silent p.K788K 0.38 TCGA-RP-A695-06 20 42265791 42265791 C T IFT52 Missense_Mutation p.P340S 0.27 deleterious(0.03) benign(0.103) TCGA-RP-A695-06 20 42891892 42891892 G A GDAP1L1 Silent p.T190T 0.44 TCGA-RP-A695-06 20 43752581 43752581 C T WFDC12 Missense_Mutation p.G81E 0.38 tolerated(0.11) probably_damaging(0.916) TCGA-RP-A695-06 20 45188639 45188639 C A SLC13A3 3'UTR 0.46 TCGA-RP-A695-06 20 46264737 46264737 C T NCOA3 Missense_Mutation p.S536F 0.51 deleterious(0) probably_damaging(0.928) TCGA-RP-A695-06 20 46265035 46265035 C T NCOA3 Silent p.S635S 0.24 TCGA-RP-A695-06 20 48129705 48129705 C T PTGIS Missense_Mutation p.R373Q 0.51 tolerated(0.53) benign(0.049) TCGA-RP-A695-06 20 52561381 52561381 G A BCAS1 3'UTR 0.26 TCGA-RP-A695-06 20 56137915 56137915 C T PCK1 Silent p.V190V 0.43 TCGA-RP-A695-06 20 57429276 57429276 A G GNAS Missense_Mutation p.D319G 0.58 deleterious_low_confidence(0.02) unknown(0) TCGA-RP-A695-06 20 57484596 57484596 A T GNAS Missense_Mutation p.Q870L 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-RP-A695-06 20 57829283 57829283 G A ZNF831 Missense_Mutation p.E1507K 0.27 tolerated(0.58) benign(0.05) TCGA-RP-A695-06 20 6021577 6021577 C T LRRN4 3'UTR 0.75 TCGA-RP-A695-06 20 60904090 60904090 G A LAMA5 Silent p.F1419F 0.16 TCGA-RP-A695-06 20 61956812 61956812 G A COL20A1 Missense_Mutation p.G1105E 0.50 deleterious(0.02) probably_damaging(1) TCGA-RP-A695-06 21 15561477 15561477 C T LIPI Missense_Mutation p.E125K 0.38 tolerated(0.11) benign(0.359) TCGA-RP-A695-06 21 18924092 18924092 T A CXADR Missense_Mutation p.I79N 0.35 tolerated(0.12) benign(0.147) TCGA-RP-A695-06 21 31654961 31654961 G A KRTAP24-1 Missense_Mutation p.S97F 0.41 deleterious(0.02) benign(0.297) TCGA-RP-A695-06 21 37571508 37571508 C T DOPEY2 Silent p.I93I 0.30 TCGA-RP-A695-06 21 38997755 38997755 G A KCNJ6 Silent p.I326I 0.34 TCGA-RP-A695-06 21 39795360 39795360 C T ERG Silent p.T127T 0.34 TCGA-RP-A695-06 21 41385279 41385279 C T DSCAM Missense_Mutation p.M1907I 0.31 tolerated_low_confidence(0.12) benign(0.054) TCGA-RP-A695-06 21 41450905 41450905 C T DSCAM Splice_Site p.X1474_splice 0.29 TCGA-RP-A695-06 21 41452184 41452184 C T DSCAM Missense_Mutation p.E1439K 0.34 deleterious(0.04) possibly_damaging(0.792) TCGA-RP-A695-06 21 42080603 42080603 G C DSCAM Missense_Mutation p.C46W 0.31 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 21 45970636 45970636 G A KRTAP10-2 Missense_Mutation p.R236C 0.35 deleterious(0.05) unknown(0) TCGA-RP-A695-06 21 46032354 46032354 C T KRTAP10-8 Missense_Mutation p.P113S 0.38 tolerated(0.08) unknown(0) TCGA-RP-A695-06 21 46032635 46032635 C T KRTAP10-8 Silent p.S206S 0.35 TCGA-RP-A695-06 21 46032849 46032849 C T KRTAP10-8 3'UTR 0.49 TCGA-RP-A695-06 21 47423883 47423883 G C COL6A1 Missense_Mutation p.G1015R 0.27 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 21 47548987 47548987 C T COL6A2 Intron 0.45 TCGA-RP-A695-06 22 16266996 16266996 G A POTEH Missense_Mutation p.P485S 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-RP-A695-06 22 16267005 16267005 C T POTEH Missense_Mutation p.G482R 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-RP-A695-06 22 16287620 16287620 G A POTEH Missense_Mutation p.S89F 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RP-A695-06 22 17690329 17690329 A G CECR1 Missense_Mutation p.F80S 0.43 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 22 18570761 18570761 C T PEX26 Missense_Mutation p.L280F 0.35 tolerated(0.06) benign(0.2) TCGA-RP-A695-06 22 26895181 26895181 G A TFIP11 Silent p.T406T 0.31 TCGA-RP-A695-06 22 29678492 29678492 C G EWSR1 Missense_Mutation p.P182R 0.40 tolerated(0.14) probably_damaging(0.991) TCGA-RP-A695-06 22 37326716 37326716 G A CSF2RB Missense_Mutation p.E286K 0.39 deleterious(0.03) possibly_damaging(0.507) TCGA-RP-A695-06 22 37524576 37524576 G A IL2RB Nonsense_Mutation p.Q406* 0.37 TCGA-RP-A695-06 22 38374132 38374132 C T SOX10 Missense_Mutation p.E147K 0.56 deleterious(0) probably_damaging(0.983) TCGA-RP-A695-06 22 42525765 42525765 G A CYP2D6 Silent p.I109I 0.39 TCGA-RP-A695-06 22 43206869 43206869 C T ARFGAP3 Silent p.E382E 0.33 TCGA-RP-A695-06 22 43455516 43455516 G A TTLL1 Silent p.I255I 0.48 TCGA-RP-A695-06 22 43930670 43930670 C T EFCAB6 Silent p.G1377G 0.36 TCGA-RP-A695-06 22 44073952 44073952 A G EFCAB6 Missense_Mutation p.M448T 0.22 tolerated(0.12) benign(0.159) TCGA-RP-A695-06 22 51207181 51207181 C T RABL2B 3'UTR 0.34 TCGA-RP-A695-06 2 10188298 10188298 C T KLF11 Silent p.V278V 0.51 TCGA-RP-A695-06 2 102835429 102835429 G A IL1RL2 Silent p.V247V 0.47 TCGA-RP-A695-06 2 102979140 102979140 C T IL18R1 Missense_Mutation p.P7L 0.21 tolerated(0.42) benign(0) TCGA-RP-A695-06 2 103124631 103124631 G A SLC9A4 Missense_Mutation p.G431E 0.26 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 2 10350560 10350560 C T C2orf48 Missense_Mutation p.P106L 0.28 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-RP-A695-06 2 106761806 106761806 G A UXS1 Silent p.F104F 0.12 TCGA-RP-A695-06 2 107041540 107041540 C T RGPD3 Silent p.V961V 0.24 TCGA-RP-A695-06 2 107460216 107460216 C T ST6GAL2 Missense_Mutation p.G73D 0.40 benign(0.051) TCGA-RP-A695-06 2 108488698 108488698 C T RGPD4 Missense_Mutation p.P1413L 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-RP-A695-06 2 108626719 108626719 G A SLC5A7 Missense_Mutation p.R382Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-RP-A695-06 2 109356974 109356974 C T RANBP2 Missense_Mutation p.S271F 0.41 tolerated(0.07) benign(0.139) TCGA-RP-A695-06 2 111406903 111406903 G A BUB1 Missense_Mutation p.S752F 0.47 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 2 112732904 112732904 G A MERTK Missense_Mutation p.M333I 0.30 tolerated(0.17) benign(0.023) TCGA-RP-A695-06 2 113676334 113676334 C T IL37 Missense_Mutation p.S202L 0.39 tolerated(0.39) benign(0.015) TCGA-RP-A695-06 2 113940558 113940558 G A PSD4 Silent p.E175E 0.22 TCGA-RP-A695-06 2 128047316 128047317 AG - ERCC3 Frame_Shift_Del p.S202* 0.15 TCGA-RP-A695-06 2 128341887 128341887 G A MYO7B Missense_Mutation p.E512K 0.51 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 2 128389971 128389971 C T MYO7B Silent p.V1774V 0.27 TCGA-RP-A695-06 2 130792711 130792711 G A FAR2P1 5'Flank 0.40 TCGA-RP-A695-06 2 130832699 130832699 C T POTEF Missense_Mutation p.M782I 0.38 deleterious_low_confidence(0.01) benign(0.296) TCGA-RP-A695-06 2 131981214 131981214 A G POTEE Silent p.V189V 0.35 TCGA-RP-A695-06 2 132236915 132236915 C A TUBA3D Missense_Mutation p.F87L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-RP-A695-06 2 136567097 136567097 C T LCT Silent p.G940G 0.22 TCGA-RP-A695-06 2 136567098 136567098 C T LCT Missense_Mutation p.G940E 0.23 deleterious(0) probably_damaging(0.984) TCGA-RP-A695-06 2 137852549 137852549 C T THSD7B Missense_Mutation p.R353C 0.47 tolerated(0.18) probably_damaging(0.975) TCGA-RP-A695-06 2 138375965 138375965 G A THSD7B Nonsense_Mutation p.W1193* 0.19 TCGA-RP-A695-06 2 141771262 141771262 C T LRP1B Missense_Mutation p.G748E 0.31 probably_damaging(0.931) TCGA-RP-A695-06 2 141986781 141986781 C T LRP1B Nonsense_Mutation p.W274* 0.30 TCGA-RP-A695-06 2 150071114 150071114 C T LYPD6B Missense_Mutation p.H172Y 0.24 possibly_damaging(0.862) TCGA-RP-A695-06 2 152132142 152132142 T C NMI Missense_Mutation p.I164V 0.39 tolerated(0.25) possibly_damaging(0.557) TCGA-RP-A695-06 2 154801016 154801016 G A GALNT13 Silent p.R2R 0.37 TCGA-RP-A695-06 2 158978093 158978093 C T UPP2 Silent p.L266L 0.25 TCGA-RP-A695-06 2 165404205 165404205 C T GRB14 Nonsense_Mutation p.W149* 0.32 TCGA-RP-A695-06 2 165987886 165987886 G A SCN3A Silent p.I811I 0.39 TCGA-RP-A695-06 2 166165763 166165763 C T SCN2A Missense_Mutation p.P232S 0.29 tolerated(0.08) benign(0.249) TCGA-RP-A695-06 2 167263083 167263083 C T SCN7A Silent p.R1352R 0.45 TCGA-RP-A695-06 2 167263084 167263084 C T SCN7A Missense_Mutation p.R1352Q 0.45 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 2 168104703 168104703 G A XIRP2 Missense_Mutation p.M2267I 0.28 benign(0.21) TCGA-RP-A695-06 2 171399473 171399473 C G MYO3B Missense_Mutation p.N1211K 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-RP-A695-06 2 172411041 172411041 C T CYBRD1 Missense_Mutation p.P189S 0.33 tolerated(0.2) benign(0.057) TCGA-RP-A695-06 2 172952845 172952845 C T DLX1 Missense_Mutation p.P210S 0.46 deleterious(0.02) possibly_damaging(0.742) TCGA-RP-A695-06 2 173339772 173339772 C T ITGA6 Missense_Mutation p.R368C 0.16 deleterious(0) possibly_damaging(0.773) TCGA-RP-A695-06 2 173891401 173891401 G A RAPGEF4 Nonsense_Mutation p.W785* 0.43 TCGA-RP-A695-06 2 179446729 179446729 C T TTN Missense_Mutation p.G22123S 0.46 TCGA-RP-A695-06 2 179469809 179469809 A T TTN Missense_Mutation p.I18032N 0.50 TCGA-RP-A695-06 2 179528614 179528614 T G TTN Missense_Mutation p.K12127T 0.49 TCGA-RP-A695-06 2 179532364 179532364 C T TTN Splice_Site p.X11877_splice 0.22 TCGA-RP-A695-06 2 179532365 179532365 C T TTN Missense_Mutation p.V11877M 0.22 TCGA-RP-A695-06 2 179611793 179611793 C T TTN Intron 0.20 TCGA-RP-A695-06 2 179641269 179641269 G A TTN Silent p.I1774I 0.55 TCGA-RP-A695-06 2 182412547 182412547 A G CERKL Splice_Site p.X413_splice 0.37 TCGA-RP-A695-06 2 196837005 196837005 G A DNAH7 Silent p.I673I 0.40 TCGA-RP-A695-06 2 198948748 198948748 G A PLCL1 Silent p.G169G 0.42 TCGA-RP-A695-06 2 202150030 202150030 C T CASP8 Nonsense_Mutation p.R491* 0.19 TCGA-RP-A695-06 2 202622461 202622461 G A ALS2 Missense_Mutation p.P379S 0.22 tolerated(0.37) benign(0.016) TCGA-RP-A695-06 2 203817384 203817384 G A CARF Missense_Mutation p.D137N 0.41 tolerated_low_confidence(0.1) benign(0.052) TCGA-RP-A695-06 2 203834748 203834748 C T CARF Silent p.L354L 0.17 TCGA-RP-A695-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-RP-A695-06 2 209309557 209309557 T A PTH2R Missense_Mutation p.F266L 0.20 deleterious(0.02) probably_damaging(0.942) TCGA-RP-A695-06 2 210658526 210658526 C T UNC80 Missense_Mutation p.S294F 0.14 probably_damaging(0.917) TCGA-RP-A695-06 2 210658527 210658527 C T UNC80 Silent p.S294S 0.15 TCGA-RP-A695-06 2 212566709 212566709 C T ERBB4 Missense_Mutation p.R491K 0.13 tolerated(0.53) benign(0) TCGA-RP-A695-06 2 217347508 217347508 G A SMARCAL1 Silent p.E891E 0.70 TCGA-RP-A695-06 2 219528027 219528027 C T BCS1L Missense_Mutation p.P393L 0.74 tolerated(0.32) benign(0.003) TCGA-RP-A695-06 2 220166912 220166912 T G PTPRN Missense_Mutation p.K314T 0.69 tolerated(0.14) benign(0.039) TCGA-RP-A695-06 2 220354500 220354500 C T SPEG Silent p.P2920P 0.80 TCGA-RP-A695-06 2 228884799 228884799 C T SPHKAP Nonsense_Mutation p.W257* 0.69 TCGA-RP-A695-06 2 230411721 230411721 C T DNER Missense_Mutation p.S312N 0.72 tolerated(0.09) benign(0.02) TCGA-RP-A695-06 2 234676967 234676967 G A UGT1A10 Missense_Mutation p.D393N 0.69 deleterious(0) possibly_damaging(0.64) TCGA-RP-A695-06 2 240078470 240078470 C T HDAC4 Splice_Site p.X204_splice 0.67 TCGA-RP-A695-06 2 25967158 25967184 GCTGCAGCAGCTGCGGCGGCAGCGGCA - ASXL2 In_Frame_Del p.A676_A684del 0.22 TCGA-RP-A695-06 2 27900715 27900715 G A SLC4A1AP Missense_Mutation p.E563K 0.29 deleterious(0.04) benign(0.119) TCGA-RP-A695-06 2 30987074 30987074 G A CAPN13 Missense_Mutation p.S208F 0.67 tolerated(0.58) benign(0.118) TCGA-RP-A695-06 2 31483774 31483774 G A EHD3 Missense_Mutation p.A301T 0.57 tolerated(0.06) benign(0.12) TCGA-RP-A695-06 2 31605947 31605947 G A XDH Missense_Mutation p.P320S 0.17 deleterious(0.01) benign(0.247) TCGA-RP-A695-06 2 31805809 31805809 G A SRD5A2 RNA 0.36 TCGA-RP-A695-06 2 3691551 3691551 C T COLEC11 Missense_Mutation p.S234F 0.23 deleterious(0) possibly_damaging(0.828) TCGA-RP-A695-06 2 39050183 39050183 C T DHX57 Silent p.L1081L 0.23 TCGA-RP-A695-06 2 56419976 56419976 C T CCDC85A Missense_Mutation p.S214F 0.48 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 2 65540614 65540614 G A SPRED2 3'UTR 0.13 TCGA-RP-A695-06 2 68691401 68691401 G A FBXO48 Silent p.I136I 0.45 TCGA-RP-A695-06 2 70903959 70903959 G A ADD2 Missense_Mutation p.A521V 0.40 deleterious(0.01) possibly_damaging(0.861) TCGA-RP-A695-06 2 71740931 71740931 G A DYSF Silent p.G213G 0.41 TCGA-RP-A695-06 2 75425710 75425710 G A TACR1 Silent p.F117F 0.11 TCGA-RP-A695-06 2 79254221 79254221 C T REG3G Missense_Mutation p.S86F 0.19 tolerated(0.08) benign(0.303) TCGA-RP-A695-06 2 86258679 86258679 G A POLR1A Missense_Mutation p.P1451L 0.30 tolerated(0.31) benign(0.002) TCGA-RP-A695-06 2 8871482 8871482 G A KIDINS220 Missense_Mutation p.P1562S 0.24 tolerated_low_confidence(0.06) benign(0.437) TCGA-RP-A695-06 2 89292377 89292377 G A IGKV1-8 Silent p.L7L 0.17 TCGA-RP-A695-06 2 90078243 90078243 C T IGKV3D-20 Missense_Mutation p.L94F 0.22 tolerated(0.1) benign(0.308) TCGA-RP-A695-06 2 90108956 90108956 C T IGKV6D-41 Missense_Mutation p.S74F 0.22 deleterious(0.04) benign(0.203) TCGA-RP-A695-06 2 90193262 90193262 G A IGKV1D-13 Silent p.G63G 0.17 TCGA-RP-A695-06 2 9528615 9528615 C T ASAP2 Nonsense_Mutation p.Q775* 0.18 TCGA-RP-A695-06 2 97372928 97372928 G A LMAN2L 3'UTR 0.41 TCGA-RP-A695-06 3 100174820 100174820 C T LNP1 3'UTR 0.32 TCGA-RP-A695-06 3 10084758 10084758 T C FANCD2 Silent p.L305L 0.39 TCGA-RP-A695-06 3 108220684 108220684 C T MYH15 Missense_Mutation p.D92N 0.34 deleterious(0.03) benign(0.018) TCGA-RP-A695-06 3 108813853 108813853 C T MORC1 Silent p.Q162Q 0.23 TCGA-RP-A695-06 3 109023446 109023446 G A DPPA2 Missense_Mutation p.H244Y 0.39 deleterious(0.01) possibly_damaging(0.769) TCGA-RP-A695-06 3 10975831 10975831 C T SLC6A11 Silent p.I518I 0.35 TCGA-RP-A695-06 3 111688573 111688573 G A PHLDB2 Missense_Mutation p.E1118K 0.25 deleterious(0) benign(0.254) TCGA-RP-A695-06 3 111766782 111766782 C T TMPRSS7 Silent p.S183S 0.34 TCGA-RP-A695-06 3 120499995 120499995 C T GTF2E1 Missense_Mutation p.S333F 0.28 deleterious(0.01) benign(0.125) TCGA-RP-A695-06 3 127318226 127318226 C T MCM2 Silent p.L24L 0.15 TCGA-RP-A695-06 3 127642031 127642031 C T KBTBD12 Missense_Mutation p.P43S 0.35 deleterious(0.01) probably_damaging(0.965) TCGA-RP-A695-06 3 129238505 129238505 C T IFT122 Missense_Mutation p.P1240L 0.40 deleterious(0) probably_damaging(0.994) TCGA-RP-A695-06 3 12983262 12983262 G A IQSEC1 Missense_Mutation p.H57Y 0.36 tolerated(0.55) benign(0.001) TCGA-RP-A695-06 3 130095150 130095150 C T COL6A5 Silent p.F46F 0.33 TCGA-RP-A695-06 3 130285910 130285910 C T COL6A6 Silent p.S549S 0.35 TCGA-RP-A695-06 3 134086557 134086557 G A AMOTL2 Missense_Mutation p.P275S 0.38 tolerated(0.47) benign(0.068) TCGA-RP-A695-06 3 151156192 151156192 C T IGSF10 Missense_Mutation p.G2053R 0.33 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 3 151597692 151597692 C T SUCNR1 Silent p.I4I 0.32 TCGA-RP-A695-06 3 15372031 15372031 T A SH3BP5 Nonsense_Mutation p.R61* 0.43 TCGA-RP-A695-06 3 164704944 164704944 C T SI Missense_Mutation p.D1727N 0.30 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 3 164907092 164907092 T G SLITRK3 Silent p.L509L 0.18 TCGA-RP-A695-06 3 167023635 167023635 C T ZBBX Silent p.K507K 0.48 TCGA-RP-A695-06 3 167543105 167543105 A G SERPINI1 Silent p.E409E 0.32 TCGA-RP-A695-06 3 168834197 168834197 G A MECOM Missense_Mutation p.S365F 0.31 tolerated(0.47) possibly_damaging(0.847) TCGA-RP-A695-06 3 169557761 169557761 G A LRRC31 3'UTR 0.28 TCGA-RP-A695-06 3 172353851 172353851 A T NCEH1 Missense_Mutation p.F195Y 0.39 deleterious(0.01) possibly_damaging(0.61) TCGA-RP-A695-06 3 184070869 184070869 G A CLCN2 Missense_Mutation p.L699F 0.36 tolerated(0.08) possibly_damaging(0.643) TCGA-RP-A695-06 3 187416552 187416552 G A RTP2 Missense_Mutation p.R138C 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-RP-A695-06 3 190147385 190147385 C T TMEM207 Silent p.%3D 0.35 TCGA-RP-A695-06 3 25216038 25216038 G A AC133680.1 3'Flank 0.31 TCGA-RP-A695-06 3 2928774 2928774 G A CNTN4 Missense_Mutation p.R269K 0.56 tolerated(0.79) benign(0.009) TCGA-RP-A695-06 3 3081661 3081661 G A CNTN4 Intron 0.21 TCGA-RP-A695-06 3 35756961 35756961 G A ARPP21 Missense_Mutation p.E276K 0.20 tolerated(0.25) benign(0.005) TCGA-RP-A695-06 3 38181484 38181484 C T MYD88 Missense_Mutation p.P166L 0.29 tolerated(0.08) possibly_damaging(0.879) TCGA-RP-A695-06 3 38181485 38181485 C T MYD88 Silent p.P166P 0.29 TCGA-RP-A695-06 3 38523975 38523975 C T ACVR2B Missense_Mutation p.S423L 0.17 deleterious(0) possibly_damaging(0.853) TCGA-RP-A695-06 3 38603913 38603913 C T SCN5A Missense_Mutation p.G1319D 0.53 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 3 38760228 38760228 G A SCN10A Silent p.F1199F 0.33 TCGA-RP-A695-06 3 38938428 38938428 C T SCN11A Missense_Mutation p.E771K 0.43 deleterious(0) probably_damaging(0.959) TCGA-RP-A695-06 3 39162578 39162578 G A TTC21A Missense_Mutation p.E339K 0.34 deleterious(0) possibly_damaging(0.611) TCGA-RP-A695-06 3 46506328 46506328 G A LTF Silent p.F10F 0.20 TCGA-RP-A695-06 3 4725389 4725389 C T ITPR1 Silent p.I1120I 0.40 TCGA-RP-A695-06 3 48682525 48682525 G A CELSR3 Missense_Mutation p.R2639C 0.38 tolerated(0.1) possibly_damaging(0.67) TCGA-RP-A695-06 3 49059724 49059724 C T NDUFAF3 Intron 0.26 TCGA-RP-A695-06 3 50256024 50256024 G A SLC38A3 Splice_Site 0.41 TCGA-RP-A695-06 3 50294495 50294495 C T GNAI2 Silent p.L284L 0.46 TCGA-RP-A695-06 3 50334243 50334243 G A NAT6 Missense_Mutation p.P240S 0.35 tolerated(0.3) benign(0.015) TCGA-RP-A695-06 3 52263098 52263098 G A TWF2 Silent p.G334G 0.37 TCGA-RP-A695-06 3 52537369 52537369 C T STAB1 Missense_Mutation p.P235L 0.41 tolerated(0.09) benign(0.418) TCGA-RP-A695-06 3 53212423 53212423 C T PRKCD 5'UTR 0.37 TCGA-RP-A695-06 3 54661843 54661843 C T CACNA2D3 Silent p.F331F 0.28 TCGA-RP-A695-06 3 54952861 54952861 G A LRTM1 Silent p.L221L 0.33 TCGA-RP-A695-06 3 56183124 56183124 C T ERC2 Missense_Mutation p.D396N 0.26 deleterious(0) benign(0.256) TCGA-RP-A695-06 3 65415352 65415352 C T MAGI1 Silent p.Q670Q 0.40 TCGA-RP-A695-06 3 74420524 74420524 C G CNTN3 Missense_Mutation p.E161Q 0.37 deleterious(0.03) possibly_damaging(0.64) TCGA-RP-A695-06 3 87027727 87027727 G A VGLL3 Missense_Mutation p.P118S 0.35 tolerated(0.41) benign(0.05) TCGA-RP-A695-06 3 96962845 96962845 C T EPHA6 Silent p.A440A 0.35 TCGA-RP-A695-06 3 98217220 98217220 G T OR5K2 Missense_Mutation p.E232D 0.25 tolerated(0.1) benign(0.05) TCGA-RP-A695-06 4 100510842 100510842 G A MTTP Missense_Mutation p.E146K 0.08 tolerated(0.76) benign(0.07) TCGA-RP-A695-06 4 103188772 103188772 A T SLC39A8 Missense_Mutation p.F370I 0.53 deleterious(0) possibly_damaging(0.744) TCGA-RP-A695-06 4 103866375 103866375 G A SLC9B1 Missense_Mutation p.P210S 0.20 deleterious(0.04) probably_damaging(0.913) TCGA-RP-A695-06 4 104577410 104577410 C T TACR3 Missense_Mutation p.G277R 0.18 tolerated(0.29) probably_damaging(0.962) TCGA-RP-A695-06 4 106863746 106863746 G A NPNT Missense_Mutation p.R379K 0.25 tolerated(0.9) benign(0.001) TCGA-RP-A695-06 4 111470695 111470695 C T ENPEP Missense_Mutation p.S746F 0.22 deleterious(0.01) possibly_damaging(0.516) TCGA-RP-A695-06 4 115544403 115544403 C T UGT8 Silent p.L123L 0.49 TCGA-RP-A695-06 4 119145743 119145743 A G NDST3 Missense_Mutation p.N546S 0.17 deleterious(0.05) probably_damaging(0.97) TCGA-RP-A695-06 4 119216149 119216149 C G PRSS12 Missense_Mutation p.G662R 0.20 deleterious(0) probably_damaging(0.997) TCGA-RP-A695-06 4 122854028 122854028 G A TRPC3 Missense_Mutation p.R129C 0.13 deleterious(0) probably_damaging(0.987) TCGA-RP-A695-06 4 126336847 126336847 C T FAT4 Silent p.S2243S 0.20 TCGA-RP-A695-06 4 126371310 126371310 C T FAT4 Silent p.L3047L 0.39 TCGA-RP-A695-06 4 141789318 141789318 G A RNF150 3'UTR 0.23 TCGA-RP-A695-06 4 145627718 145627718 C T HHIP Silent p.F289F 0.53 TCGA-RP-A695-06 4 146572221 146572221 T G MMAA Silent p.G247G 0.28 TCGA-RP-A695-06 4 155156304 155156304 C T DCHS2 Missense_Mutation p.G2712E 0.13 tolerated(0.82) benign(0.012) TCGA-RP-A695-06 4 155157613 155157613 C T DCHS2 Missense_Mutation p.E2276K 0.31 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 4 155241609 155241609 C T DCHS2 Missense_Mutation p.E1193K 0.19 tolerated(0.07) probably_damaging(0.943) TCGA-RP-A695-06 4 16026862 16026862 C T PROM1 Missense_Mutation p.D195N 0.43 tolerated(1) benign(0.058) TCGA-RP-A695-06 4 164394679 164394679 C T TKTL2 Missense_Mutation p.D70N 0.17 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 4 1656719 1656719 G A FAM53A Silent p.L290L 0.23 TCGA-RP-A695-06 4 167658726 167658726 C T SPOCK3 Missense_Mutation p.G345S 0.40 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 4 16900017 16900017 C T LDB2 Missense_Mutation p.R31Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-RP-A695-06 4 169013809 169013809 C T ANXA10 5'UTR 0.33 TCGA-RP-A695-06 4 169604186 169604186 G A PALLD Missense_Mutation p.G398R 0.22 tolerated(0.54) benign(0.168) TCGA-RP-A695-06 4 177093643 177093643 C T WDR17 Missense_Mutation p.P1113S 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-RP-A695-06 4 183676174 183676174 G A TENM3 Missense_Mutation p.D1552N 0.44 tolerated(0.07) benign(0) TCGA-RP-A695-06 4 183676423 183676423 G A TENM3 Intron 0.25 TCGA-RP-A695-06 4 184192255 184192255 C A WWC2 Missense_Mutation p.A808E 0.20 deleterious(0) possibly_damaging(0.902) TCGA-RP-A695-06 4 189064991 189064991 G A TRIML1 Splice_Site p.X246_splice 0.42 TCGA-RP-A695-06 4 25005214 25005214 G A LGI2 Silent p.F499F 0.20 TCGA-RP-A695-06 4 25014077 25014077 C T LGI2 Missense_Mutation p.D234N 0.38 deleterious(0) possibly_damaging(0.58) TCGA-RP-A695-06 4 42965093 42965093 G A GRXCR1 Missense_Mutation p.R190Q 0.48 tolerated(0.47) benign(0.298) TCGA-RP-A695-06 4 44450167 44450167 G A KCTD8 Missense_Mutation p.P125L 0.45 deleterious(0) possibly_damaging(0.893) TCGA-RP-A695-06 4 46314596 46314596 C T GABRA2 Silent p.G131G 0.39 TCGA-RP-A695-06 4 47589110 47589110 G A ATP10D Missense_Mutation p.M1276I 0.24 tolerated(0.62) benign(0.002) TCGA-RP-A695-06 4 48069520 48069520 G A TXK 3'UTR 0.43 TCGA-RP-A695-06 4 48517196 48517196 C T FRYL Missense_Mutation p.G2596R 0.35 tolerated_low_confidence(0.27) benign(0.025) TCGA-RP-A695-06 4 54967819 54967819 G A GSX2 Silent p.L215L 0.40 TCGA-RP-A695-06 4 55961006 55961006 C T KDR Silent p.V978V 0.19 TCGA-RP-A695-06 4 65274889 65274889 C T TECRL Missense_Mutation p.E61K 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-RP-A695-06 4 69403558 69403558 G A UGT2B17 Nonsense_Mutation p.R460* 0.48 TCGA-RP-A695-06 4 69696608 69696608 G A UGT2B10 3'UTR 0.52 TCGA-RP-A695-06 4 70361063 70361063 G A UGT2B4 Missense_Mutation p.R173C 0.45 deleterious(0.01) benign(0.052) TCGA-RP-A695-06 4 74347561 74347561 C T AFM Silent p.P23P 0.10 TCGA-RP-A695-06 4 80328525 80328525 T G GK2 Missense_Mutation p.N277T 0.49 deleterious(0) possibly_damaging(0.9) TCGA-RP-A695-06 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.18 tolerated(0.18) possibly_damaging(0.643) TCGA-RP-A695-06 4 83778123 83778123 G A SEC31A Silent p.S621S 0.21 TCGA-RP-A695-06 4 83858445 83858445 G A LIN54 Silent p.I513I 0.42 TCGA-RP-A695-06 4 89658686 89658686 C T FAM13A Silent p.R861R 0.24 TCGA-RP-A695-06 4 90856764 90856764 G A MMRN1 Missense_Mutation p.D645N 0.46 deleterious(0.04) benign(0.263) TCGA-RP-A695-06 4 94750611 94750611 C T ATOH1 Silent p.A178A 0.21 TCGA-RP-A695-06 5 110820132 110820132 C T CAMK4 Missense_Mutation p.P464S 0.44 tolerated_low_confidence(0.17) benign(0.003) TCGA-RP-A695-06 5 112175246 112175246 C T APC Missense_Mutation p.P1319S 0.34 benign(0) TCGA-RP-A695-06 5 11236928 11236928 C T CTNND2 Missense_Mutation p.G546R 0.34 tolerated(0.1) possibly_damaging(0.885) TCGA-RP-A695-06 5 118969735 118969735 C A FAM170A Missense_Mutation p.R98S 0.37 tolerated(0.36) benign(0.054) TCGA-RP-A695-06 5 121786523 121786523 G A SNCAIP Missense_Mutation p.E661K 0.42 deleterious(0) probably_damaging(0.995) TCGA-RP-A695-06 5 1221994 1221994 C T SLC6A19 Missense_Mutation p.S627F 0.42 deleterious(0.01) possibly_damaging(0.786) TCGA-RP-A695-06 5 1232454 1232454 C T SLC6A18 Missense_Mutation p.S94F 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-RP-A695-06 5 1244483 1244483 G A SLC6A18 Missense_Mutation p.M497I 0.36 tolerated(1) benign(0.013) TCGA-RP-A695-06 5 127668664 127668664 G A FBN2 Missense_Mutation p.P1388S 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-RP-A695-06 5 127855031 127855031 C T FBN2 Missense_Mutation p.G188E 0.42 deleterious(0) probably_damaging(0.931) TCGA-RP-A695-06 5 127855032 127855032 C T FBN2 Missense_Mutation p.G188R 0.42 deleterious(0) probably_damaging(0.953) TCGA-RP-A695-06 5 134164356 134164356 C T DDX46 Missense_Mutation p.S1019L 0.38 tolerated(0.15) probably_damaging(0.971) TCGA-RP-A695-06 5 134785307 134785307 G A TIFAB Missense_Mutation p.S108L 0.30 tolerated(0.16) benign(0.355) TCGA-RP-A695-06 5 134914202 134914202 C T CXCL14 Missense_Mutation p.G43E 0.41 deleterious(0.03) probably_damaging(0.993) TCGA-RP-A695-06 5 135587470 135587470 G A TRPC7 Silent p.F482F 0.34 TCGA-RP-A695-06 5 137756645 137756645 C T KDM3B Silent p.S1322S 0.27 TCGA-RP-A695-06 5 13776715 13776715 T C DNAH5 Missense_Mutation p.N3069S 0.28 possibly_damaging(0.621) TCGA-RP-A695-06 5 13864686 13864686 G A DNAH5 Silent p.I1472I 0.32 TCGA-RP-A695-06 5 140167038 140167038 C T PCDHA1 Missense_Mutation p.S388F 0.38 tolerated_low_confidence(0.06) benign(0.034) TCGA-RP-A695-06 5 140175878 140175878 C T PCDHA2 Silent p.I443I 0.30 TCGA-RP-A695-06 5 140188614 140188614 G A PCDHA4 Silent p.G614G 0.32 TCGA-RP-A695-06 5 140228566 140228566 C T PCDHA9 Silent p.I162I 0.27 TCGA-RP-A695-06 5 140308980 140308980 C T PCDHAC1 Intron 0.27 TCGA-RP-A695-06 5 140362115 140362115 C T PCDHAC1 Nonsense_Mutation p.Q850* 0.22 TCGA-RP-A695-06 5 140480236 140480236 G A PCDHB3 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.094) TCGA-RP-A695-06 5 140480405 140480405 G A PCDHB3 Missense_Mutation p.E58K 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.48) TCGA-RP-A695-06 5 140502499 140502499 G A PCDHB4 Missense_Mutation p.D307N 0.37 tolerated(0.07) possibly_damaging(0.846) TCGA-RP-A695-06 5 140594856 140594856 G A PCDHB13 Silent p.Q387Q 0.35 TCGA-RP-A695-06 5 140741101 140741101 C T PCDHGB2 Missense_Mutation p.P467S 0.39 tolerated(0.22) possibly_damaging(0.789) TCGA-RP-A695-06 5 140768860 140768860 C T PCDHGB4 Missense_Mutation p.S470L 0.36 tolerated(0.66) benign(0.027) TCGA-RP-A695-06 5 145439446 145439446 C T SH3RF2 Missense_Mutation p.P525S 0.35 tolerated(0.13) benign(0.088) TCGA-RP-A695-06 5 149324134 149324134 C T PDE6A Missense_Mutation p.D35N 0.36 tolerated(0.47) benign(0.002) TCGA-RP-A695-06 5 150715037 150715037 C T SLC36A2 Missense_Mutation p.M199I 0.31 tolerated(0.31) benign(0.013) TCGA-RP-A695-06 5 153056654 153056654 G A GRIA1 Missense_Mutation p.G331E 0.32 deleterious(0.03) probably_damaging(1) TCGA-RP-A695-06 5 153056655 153056655 G A GRIA1 Silent p.G331G 0.33 TCGA-RP-A695-06 5 153085585 153085585 C T GRIA1 Missense_Mutation p.S604F 0.34 deleterious(0) probably_damaging(0.996) TCGA-RP-A695-06 5 153429380 153429380 T G MFAP3 Missense_Mutation p.L33R 0.48 tolerated_low_confidence(0.26) benign(0.003) TCGA-RP-A695-06 5 154393915 154393915 G A KIF4B Missense_Mutation p.D166N 0.39 deleterious(0.04) benign(0.169) TCGA-RP-A695-06 5 170239192 170239192 C T GABRP Missense_Mutation p.S418F 0.61 deleterious(0) probably_damaging(0.996) TCGA-RP-A695-06 5 170338053 170338053 C T RANBP17 Silent p.C225C 0.62 TCGA-RP-A695-06 5 176026371 176026371 G A GPRIN1 Silent p.F155F 0.35 TCGA-RP-A695-06 5 176289792 176289792 G A UNC5A Missense_Mutation p.E80K 0.31 deleterious(0) probably_damaging(0.993) TCGA-RP-A695-06 5 179554672 179554672 C T RASGEF1C Silent p.R217R 0.41 TCGA-RP-A695-06 5 180043915 180043915 G A FLT4 Silent p.F1027F 0.42 TCGA-RP-A695-06 5 180053175 180053175 G A FLT4 Silent p.T398T 0.39 TCGA-RP-A695-06 5 19473448 19473448 C T CDH18 Missense_Mutation p.D754N 0.36 tolerated(0.15) probably_damaging(0.997) TCGA-RP-A695-06 5 33462244 33462244 C T TARS Nonsense_Mutation p.R624* 0.35 TCGA-RP-A695-06 5 35066005 35066005 C T PRLR Missense_Mutation p.G352E 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 5 35792498 35792498 C T SPEF2 Missense_Mutation p.L1502F 0.26 tolerated(0.13) probably_damaging(0.997) TCGA-RP-A695-06 5 35957459 35957459 G A UGT3A1 Silent p.S302S 0.45 TCGA-RP-A695-06 5 41045890 41045890 G A MROH2B Silent p.F598F 0.34 TCGA-RP-A695-06 5 41049411 41049411 G A MROH2B Missense_Mutation p.S491L 0.38 deleterious(0) benign(0.05) TCGA-RP-A695-06 5 50120753 50120753 G A PARP8 Silent p.L624L 0.40 TCGA-RP-A695-06 5 54645476 54645476 C T SKIV2L2 Missense_Mutation p.P439L 0.23 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 5 55056097 55056097 G A DDX4 Missense_Mutation p.G66E 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-RP-A695-06 5 68665386 68665386 G A TAF9 Intron 0.85 TCGA-RP-A695-06 5 73166000 73166000 G A ARHGEF28 Silent p.E844E 0.44 TCGA-RP-A695-06 5 73931042 73931042 T G ENC1 Missense_Mutation p.K423N 0.36 deleterious(0.02) possibly_damaging(0.473) TCGA-RP-A695-06 5 78326665 78326665 G A DMGDH Silent p.V558V 0.14 TCGA-RP-A695-06 5 79095400 79095400 C T CMYA5 Silent p.H4057H 0.20 TCGA-RP-A695-06 5 79815661 79815661 C T FAM151B Missense_Mutation p.S156F 0.23 deleterious(0.01) possibly_damaging(0.81) TCGA-RP-A695-06 5 89943465 89943465 G A GPR98 Missense_Mutation p.G1058E 0.34 probably_damaging(0.993) TCGA-RP-A695-06 5 89990408 89990408 G A GPR98 Missense_Mutation p.R2612K 0.41 probably_damaging(0.92) TCGA-RP-A695-06 5 90041520 90041520 C T GPR98 Missense_Mutation p.P3628S 0.37 probably_damaging(0.968) TCGA-RP-A695-06 5 90261313 90261313 C T GPR98 Silent p.L5980L 0.33 TCGA-RP-A695-06 6 100404043 100404043 G A MCHR2 5'UTR 0.38 TCGA-RP-A695-06 6 106968060 106968060 G A AIM1 Missense_Mutation p.E585K 0.33 deleterious_low_confidence(0.03) benign(0.01) TCGA-RP-A695-06 6 109816600 109816600 G A AK9 Missense_Mutation p.P1787S 0.34 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 6 117114162 117114162 G A GPRC6A Missense_Mutation p.L642F 0.32 tolerated(0.13) benign(0.104) TCGA-RP-A695-06 6 122720958 122720958 T C HSF2 Missense_Mutation p.F26L 0.39 tolerated(0.55) benign(0.058) TCGA-RP-A695-06 6 128304396 128304396 G A PTPRK Silent p.V1132V 0.53 TCGA-RP-A695-06 6 129470208 129470208 G A LAMA2 Missense_Mutation p.A332T 0.32 deleterious(0.01) probably_damaging(1) TCGA-RP-A695-06 6 129748923 129748923 G A LAMA2 Silent p.K1964K 0.25 TCGA-RP-A695-06 6 132022337 132022337 C T OR2A4 Missense_Mutation p.D69N 0.16 deleterious(0.01) possibly_damaging(0.786) TCGA-RP-A695-06 6 132030860 132030860 T A CTAGE9 Missense_Mutation p.Y433F 0.32 deleterious(0) probably_damaging(0.956) TCGA-RP-A695-06 6 132211584 132211584 G A ENPP1 Missense_Mutation p.R904K 0.38 tolerated(0.43) possibly_damaging(0.887) TCGA-RP-A695-06 6 136980466 136980466 G A MAP3K5 Nonsense_Mutation p.Q473* 0.38 TCGA-RP-A695-06 6 137815186 137815186 G A OLIG3 Missense_Mutation p.S41L 0.33 deleterious(0.04) probably_damaging(0.953) TCGA-RP-A695-06 6 144086702 144086702 C T PHACTR2 Silent p.S333S 0.38 TCGA-RP-A695-06 6 144759929 144759929 C T UTRN Silent p.L430L 0.33 TCGA-RP-A695-06 6 158923851 158923851 C T TULP4 Silent p.S1052S 0.24 TCGA-RP-A695-06 6 160514653 160514653 C T IGF2R Intron 0.48 TCGA-RP-A695-06 6 161530837 161530837 G A MAP3K4 Silent p.E1429E 0.41 TCGA-RP-A695-06 6 165715586 165715586 C T C6orf118 Silent p.T75T 0.27 TCGA-RP-A695-06 6 168348608 168348608 G A MLLT4 Missense_Mutation p.G1203E 0.41 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-RP-A695-06 6 17602838 17602838 C T FAM8A1 Missense_Mutation p.P244S 0.41 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 6 17637746 17637746 T C NUP153 Missense_Mutation p.N701S 0.35 tolerated(1) benign(0) TCGA-RP-A695-06 6 24429324 24429324 C T GPLD1 Missense_Mutation p.G820E 0.30 tolerated(0.48) benign(0.093) TCGA-RP-A695-06 6 24429325 24429325 C T GPLD1 Missense_Mutation p.G820R 0.31 tolerated(0.14) possibly_damaging(0.747) TCGA-RP-A695-06 6 25726730 25726730 C T HIST1H2AA Missense_Mutation p.G9E 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-RP-A695-06 6 26368892 26368892 C T BTN3A2 Missense_Mutation p.T62I 0.32 tolerated(0.19) probably_damaging(0.974) TCGA-RP-A695-06 6 26509291 26509291 C T BTN1A1 Silent p.D490D 0.29 TCGA-RP-A695-06 6 29079940 29079940 G A OR2J3 Silent p.P91P 0.32 TCGA-RP-A695-06 6 29408426 29408426 C T OR10C1 Missense_Mutation p.L212F 0.41 deleterious(0.04) probably_damaging(0.986) TCGA-RP-A695-06 6 31915744 31915744 C T CFB Silent p.I763I 0.40 TCGA-RP-A695-06 6 31926888 31926888 C T SKIV2L 5'UTR 0.25 TCGA-RP-A695-06 6 32012858 32012858 T G TNXB Missense_Mutation p.T47P 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-RP-A695-06 6 33290752 33290752 G A DAXX 5'UTR 0.41 TCGA-RP-A695-06 6 35888275 35888275 G A SRPK1 Missense_Mutation p.T15I 0.35 tolerated(0.27) benign(0.316) TCGA-RP-A695-06 6 40400355 40400355 C T LRFN2 Nonsense_Mutation p.W166* 0.32 TCGA-RP-A695-06 6 4119493 4119493 G A ECI2 Missense_Mutation p.P271L 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 6 41752707 41752707 G A PRICKLE4 Missense_Mutation p.R92Q 0.38 tolerated(0.28) benign(0.003) TCGA-RP-A695-06 6 41899486 41899486 G T BYSL Nonsense_Mutation p.E296* 0.42 TCGA-RP-A695-06 6 44144384 44144384 G A CAPN11 Silent p.G356G 0.41 TCGA-RP-A695-06 6 47649221 47649221 C T GPR111 Missense_Mutation p.S309F 0.42 deleterious(0.03) benign(0.086) TCGA-RP-A695-06 6 49928133 49928133 G A DEFB114 Missense_Mutation p.R28C 0.43 deleterious_low_confidence(0) benign(0) TCGA-RP-A695-06 6 51799060 51799060 A C PKHD1 Missense_Mutation p.V1990G 0.30 deleterious(0) probably_damaging(0.976) TCGA-RP-A695-06 6 51799061 51799061 C T PKHD1 Missense_Mutation p.V1990I 0.31 tolerated(0.68) benign(0.116) TCGA-RP-A695-06 6 52051206 52051206 C T IL17A 5'UTR 0.19 TCGA-RP-A695-06 6 52541912 52541912 C T TMEM14A Silent p.I4I 0.32 TCGA-RP-A695-06 6 53519576 53519576 C T KLHL31 Silent p.R165R 0.33 TCGA-RP-A695-06 6 54013895 54013895 C T MLIP Silent p.I218I 0.21 TCGA-RP-A695-06 6 54013896 54013896 C T MLIP Missense_Mutation p.P219S 0.21 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 6 54805390 54805390 C T FAM83B Missense_Mutation p.R541C 0.35 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 6 54806797 54806797 A T FAM83B Missense_Mutation p.N1010Y 0.43 deleterious(0) possibly_damaging(0.8) TCGA-RP-A695-06 6 55378853 55378853 C T HMGCLL1 Missense_Mutation p.A209T 0.36 deleterious(0.01) benign(0.012) TCGA-RP-A695-06 6 55739525 55739525 C T BMP5 Missense_Mutation p.E47K 0.38 deleterious(0) probably_damaging(0.992) TCGA-RP-A695-06 6 55922556 55922556 C T COL21A1 Missense_Mutation p.G925R 0.29 deleterious(0) unknown(0) TCGA-RP-A695-06 6 55924028 55924028 C T COL21A1 Missense_Mutation p.R874K 0.38 tolerated(0.92) benign(0.001) TCGA-RP-A695-06 6 55924959 55924959 G A COL21A1 Missense_Mutation p.S822F 0.27 deleterious(0.01) benign(0.405) TCGA-RP-A695-06 6 56035885 56035885 C T COL21A1 Missense_Mutation p.E228K 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-RP-A695-06 6 7231125 7231125 C T RREB1 Silent p.S931S 0.29 TCGA-RP-A695-06 6 72678741 72678741 G A RIMS1 Missense_Mutation p.E74K 0.37 tolerated(0.5) probably_damaging(0.952) TCGA-RP-A695-06 6 74116200 74116200 A G DDX43 Silent p.Q307Q 0.25 TCGA-RP-A695-06 6 7579664 7579664 G A DSP Missense_Mutation p.E1081K 0.37 probably_damaging(0.937) TCGA-RP-A695-06 6 7583553 7583553 G A DSP Missense_Mutation p.G2020R 0.39 probably_damaging(1) TCGA-RP-A695-06 6 7584185 7584185 G A DSP Silent p.P2230P 0.42 TCGA-RP-A695-06 6 75858174 75858174 C T COL12A1 Missense_Mutation p.R1396Q 0.40 benign(0.005) TCGA-RP-A695-06 6 76023024 76023024 C T FILIP1 Missense_Mutation p.G842R 0.26 tolerated(0.14) possibly_damaging(0.577) TCGA-RP-A695-06 6 76640689 76640689 C T IMPG1 Missense_Mutation p.G742R 0.39 tolerated(0.07) benign(0.132) TCGA-RP-A695-06 6 76660619 76660619 C T IMPG1 Missense_Mutation p.G495E 0.40 tolerated(1) benign(0.001) TCGA-RP-A695-06 6 80629181 80629181 G A ELOVL4 Nonsense_Mutation p.Q209* 0.36 TCGA-RP-A695-06 6 86257249 86257249 A G SNX14 Missense_Mutation p.L296P 0.43 deleterious(0) possibly_damaging(0.824) TCGA-RP-A695-06 6 87726201 87726201 G A HTR1E 3'UTR 0.47 TCGA-RP-A695-06 6 88854738 88854738 G A CNR1 Missense_Mutation p.L86F 0.31 tolerated_low_confidence(0.8) benign(0.11) TCGA-RP-A695-06 6 97247237 97247237 G A GPR63 Missense_Mutation p.A124V 0.34 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 7 100552139 100552139 C G MUC3A Missense_Mutation p.T297S 0.12 tolerated(0.2) benign(0.441) TCGA-RP-A695-06 7 100678765 100678765 C T MUC17 Silent p.I1356I 0.40 TCGA-RP-A695-06 7 103214589 103214589 G A RELN Silent p.G1487G 0.47 TCGA-RP-A695-06 7 107718648 107718648 C T LAMB4 Silent p.T667T 0.38 TCGA-RP-A695-06 7 112724153 112724153 G A GPR85 Silent p.F208F 0.36 TCGA-RP-A695-06 7 114282634 114282634 C T FOXP2 Silent p.S340S 0.32 TCGA-RP-A695-06 7 115596807 115596807 C T TFEC Missense_Mutation p.G103E 0.40 tolerated(0.07) benign(0.03) TCGA-RP-A695-06 7 120386040 120386040 G A KCND2 Silent p.T558T 0.41 TCGA-RP-A695-06 7 131172499 131172499 C T MKLN1 3'UTR 0.06 TCGA-RP-A695-06 7 137597817 137597817 G A CREB3L2 Missense_Mutation p.S168F 0.26 deleterious(0.03) possibly_damaging(0.692) TCGA-RP-A695-06 7 138333848 138333848 C T SVOPL Missense_Mutation p.G190D 0.31 tolerated(0.06) benign(0.367) TCGA-RP-A695-06 7 138333849 138333849 C T SVOPL Missense_Mutation p.G190S 0.27 tolerated(0.12) benign(0.012) TCGA-RP-A695-06 7 141730554 141730554 G A MGAM Silent p.G489G 0.34 TCGA-RP-A695-06 7 142045272 142045272 A T TRBV4-2 5'UTR 0.24 TCGA-RP-A695-06 7 142104519 142104519 G A TRBV6-9 Missense_Mutation p.S12F 0.30 tolerated(0.09) benign(0.005) TCGA-RP-A695-06 7 142250775 142250775 T C TRBV6-4 Missense_Mutation p.D91G 0.41 tolerated(0.09) benign(0.006) TCGA-RP-A695-06 7 142622582 142622582 C T TRPV5 Intron 0.29 TCGA-RP-A695-06 7 142723714 142723714 G A OR9A2 Missense_Mutation p.S169L 0.36 tolerated(0.28) benign(0.002) TCGA-RP-A695-06 7 142750329 142750329 G A OR6V1 Missense_Mutation p.V298M 0.44 deleterious(0.01) benign(0.362) TCGA-RP-A695-06 7 143633000 143633000 C T OR2F2 Silent p.I225I 0.41 TCGA-RP-A695-06 7 14622740 14622740 G A DGKB Missense_Mutation p.P487S 0.36 tolerated(0.06) benign(0.177) TCGA-RP-A695-06 7 147092834 147092834 C T CNTNAP2 Silent p.F544F 0.36 TCGA-RP-A695-06 7 147815211 147815211 G A CNTNAP2 Silent p.R795R 0.26 TCGA-RP-A695-06 7 149986578 149986578 G A ACTR3C Silent p.I86I 0.30 TCGA-RP-A695-06 7 150028236 150028236 C T ZBED6CL 3'UTR 0.60 TCGA-RP-A695-06 7 150695766 150695766 G A NOS3 Missense_Mutation p.E272K 0.36 deleterious(0.03) possibly_damaging(0.542) TCGA-RP-A695-06 7 150711274 150711274 C T ATG9B 3'UTR 0.38 TCGA-RP-A695-06 7 151135005 151135005 C T CRYGN Intron 0.32 TCGA-RP-A695-06 7 151945143 151945143 A G KMT2C Silent p.P792P 0.03 TCGA-RP-A695-06 7 154876242 154876242 G A HTR5A 3'UTR 0.27 TCGA-RP-A695-06 7 20198758 20198758 C T MACC1 Missense_Mutation p.G409E 0.33 tolerated(0.14) possibly_damaging(0.801) TCGA-RP-A695-06 7 20449672 20449672 C T ITGB8 3'UTR 0.31 TCGA-RP-A695-06 7 20698738 20698738 C T ABCB5 Intron 0.34 TCGA-RP-A695-06 7 23240327 23240327 C T NUPL2 Missense_Mutation p.P412L 0.39 deleterious(0) unknown(0) TCGA-RP-A695-06 7 2473146 2473146 C T CHST12 Missense_Mutation p.A291V 0.40 deleterious(0) probably_damaging(0.998) TCGA-RP-A695-06 7 2959121 2959121 C T CARD11 Missense_Mutation p.D799N 0.45 deleterious(0) benign(0.195) TCGA-RP-A695-06 7 31144518 31144518 G A ADCYAP1R1 Missense_Mutation p.G433S 0.34 tolerated(0.23) possibly_damaging(0.715) TCGA-RP-A695-06 7 31904630 31904630 G A PDE1C Missense_Mutation p.P286S 0.36 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 7 38288848 38288848 C T TRGC2 Silent p.K109K 0.36 TCGA-RP-A695-06 7 38534056 38534056 C T AMPH Missense_Mutation p.E93K 0.34 deleterious(0.03) possibly_damaging(0.85) TCGA-RP-A695-06 7 39472825 39472825 C T POU6F2 Silent p.I392I 0.28 TCGA-RP-A695-06 7 45724597 45724597 C T ADCY1 Missense_Mutation p.T668M 0.34 deleterious(0.01) probably_damaging(0.96) TCGA-RP-A695-06 7 4876185 4876185 G A RADIL Missense_Mutation p.P196L 0.30 tolerated(0.44) benign(0.012) TCGA-RP-A695-06 7 50742344 50742344 C T GRB10 Missense_Mutation p.D51N 0.34 deleterious(0.01) probably_damaging(0.921) TCGA-RP-A695-06 7 5410419 5410419 G A TNRC18 Missense_Mutation p.P1269L 0.20 benign(0.028) TCGA-RP-A695-06 7 5540214 5540214 G A FBXL18 Silent p.S562S 0.36 TCGA-RP-A695-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.40 TCGA-RP-A695-06 7 590125 590125 G A PRKAR1B Missense_Mutation p.S363F 0.30 deleterious(0.02) probably_damaging(1) TCGA-RP-A695-06 7 64452373 64452373 G A ERV3-1 Silent p.F344F 0.37 TCGA-RP-A695-06 7 71134991 71134991 G A WBSCR17 Missense_Mutation p.R434K 0.37 deleterious(0.03) possibly_damaging(0.899) TCGA-RP-A695-06 7 73944093 73944093 C T GTF2IRD1 Missense_Mutation p.P406S 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-RP-A695-06 7 82585619 82585619 C T PCLO Silent p.G1550G 0.19 TCGA-RP-A695-06 7 82784310 82784310 G A PCLO Silent p.P549P 0.30 TCGA-RP-A695-06 7 82784584 82784584 T G PCLO Missense_Mutation p.K458T 0.39 possibly_damaging(0.607) TCGA-RP-A695-06 7 83590696 83590696 C T SEMA3A Silent p.R769R 0.34 TCGA-RP-A695-06 7 87076521 87076521 C T ABCB4 Silent p.R278R 0.35 TCGA-RP-A695-06 7 91722616 91722616 A T AKAP9 Missense_Mutation p.E3188D 0.44 benign(0.325) TCGA-RP-A695-06 7 91727477 91727477 T C AKAP9 Silent p.I3554I 0.26 TCGA-RP-A695-06 7 98446275 98446275 G A TMEM130 Silent p.I350I 0.34 TCGA-RP-A695-06 7 99226911 99226911 C T ZSCAN25 Silent p.L301L 0.29 TCGA-RP-A695-06 8 100454793 100454793 T G VPS13B Missense_Mutation p.S1125R 0.43 deleterious(0) probably_damaging(0.974) TCGA-RP-A695-06 8 101730087 101730087 G A PABPC1 Silent p.G139G 0.38 TCGA-RP-A695-06 8 103846971 103846971 G A AZIN1 Missense_Mutation p.H197Y 0.34 deleterious(0) probably_damaging(0.924) TCGA-RP-A695-06 8 106814394 106814394 C T ZFPM2 Missense_Mutation p.T695I 0.36 tolerated(0.08) probably_damaging(0.992) TCGA-RP-A695-06 8 110100524 110100524 G A TRHR Silent p.R261R 0.24 TCGA-RP-A695-06 8 110457462 110457462 C T PKHD1L1 Silent p.F1788F 0.34 TCGA-RP-A695-06 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.43 deleterious(0.04) possibly_damaging(0.576) TCGA-RP-A695-06 8 113301619 113301619 C T CSMD3 Nonsense_Mutation p.W3041* 0.33 TCGA-RP-A695-06 8 113353881 113353881 T A CSMD3 Missense_Mutation p.E2159D 0.36 deleterious(0) probably_damaging(0.972) TCGA-RP-A695-06 8 11994678 11994678 C T USP17L2 Silent p.%3D 0.14 TCGA-RP-A695-06 8 124195162 124195162 C T FAM83A Silent p.V22V 0.58 TCGA-RP-A695-06 8 126040941 126040941 A C KIAA0196 Missense_Mutation p.I1115R 0.28 tolerated(0.54) benign(0.001) TCGA-RP-A695-06 8 139190844 139190844 G A FAM135B Silent p.F321F 0.42 TCGA-RP-A695-06 8 139727935 139727935 C T COL22A1 Missense_Mutation p.R836Q 0.35 possibly_damaging(0.694) TCGA-RP-A695-06 8 144130680 144130680 G A C8orf31 3'UTR 0.30 TCGA-RP-A695-06 8 144550584 144550584 G A ZC3H3 Silent p.I691I 0.48 TCGA-RP-A695-06 8 144812401 144812401 G A FAM83H Nonsense_Mutation p.Q118* 0.22 TCGA-RP-A695-06 8 145662350 145662350 C T TONSL Intron 0.31 TCGA-RP-A695-06 8 19363403 19363403 G A CSGALNACT1 5'UTR 0.24 TCGA-RP-A695-06 8 21985315 21985315 G A HR Missense_Mutation p.P214S 0.37 tolerated(0.37) benign(0.027) TCGA-RP-A695-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.41 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 8 24207428 24207428 T A ADAM28 Missense_Mutation p.V681E 0.34 deleterious(0) probably_damaging(0.921) TCGA-RP-A695-06 8 24259437 24259437 C T ADAMDEC1 Silent p.F384F 0.42 TCGA-RP-A695-06 8 24775791 24775791 G A NEFM Missense_Mutation p.G808E 0.35 tolerated_low_confidence(0.5) probably_damaging(0.999) TCGA-RP-A695-06 8 26627845 26627845 C T ADRA1A Missense_Mutation p.A408T 0.36 tolerated_low_confidence(0.62) benign(0.008) TCGA-RP-A695-06 8 27297854 27297854 C T PTK2B Silent p.P645P 0.41 TCGA-RP-A695-06 8 27327417 27327417 C T CHRNA2 Missense_Mutation p.G52E 0.37 tolerated(0.48) benign(0) TCGA-RP-A695-06 8 27634312 27634312 A G ESCO2 Missense_Mutation p.R163G 0.36 deleterious(0) benign(0.013) TCGA-RP-A695-06 8 27898640 27898640 C T NUGGC Missense_Mutation p.M513I 0.23 tolerated(1) benign(0) TCGA-RP-A695-06 8 27995278 27995278 C T ELP3 Missense_Mutation p.R324C 0.30 deleterious(0.01) benign(0.088) TCGA-RP-A695-06 8 2806844 2806844 C T CSMD1 Missense_Mutation p.G3460E 0.24 probably_damaging(1) TCGA-RP-A695-06 8 2966271 2966271 C T CSMD1 Splice_Site p.X2203_splice 0.23 TCGA-RP-A695-06 8 2967724 2967724 G A CSMD1 Silent p.F2188F 0.46 TCGA-RP-A695-06 8 3047584 3047584 C T CSMD1 Missense_Mutation p.G1750R 0.25 probably_damaging(0.998) TCGA-RP-A695-06 8 35406992 35406992 G A UNC5D Missense_Mutation p.E96K 0.25 deleterious(0.02) possibly_damaging(0.492) TCGA-RP-A695-06 8 35647947 35647947 C T UNC5D Nonsense_Mutation p.Q910* 0.34 TCGA-RP-A695-06 8 36703317 36703317 C T KCNU1 Intron 0.29 TCGA-RP-A695-06 8 39080712 39080712 G A ADAM32 Missense_Mutation p.D494N 0.36 tolerated(0.56) benign(0.065) TCGA-RP-A695-06 8 39603995 39603995 C T ADAM2 Missense_Mutation p.D724N 0.33 tolerated(0.1) unknown(0) TCGA-RP-A695-06 8 41530113 41530113 C T ANK1 Missense_Mutation p.E1660K 0.40 deleterious_low_confidence(0.01) benign(0.096) TCGA-RP-A695-06 8 41572511 41572511 G A ANK1 Missense_Mutation p.P595S 0.43 deleterious(0.01) probably_damaging(0.974) TCGA-RP-A695-06 8 41581082 41581082 G A ANK1 Missense_Mutation p.R294W 0.36 deleterious(0.01) benign(0.171) TCGA-RP-A695-06 8 42234573 42234573 C T DKK4 5'UTR 0.23 TCGA-RP-A695-06 8 52320946 52320946 G A PXDNL Missense_Mutation p.P1080S 0.47 tolerated(0.11) possibly_damaging(0.859) TCGA-RP-A695-06 8 53085019 53085019 C T ST18 Silent p.G134G 0.42 TCGA-RP-A695-06 8 55540733 55540733 G A RP1 Missense_Mutation p.E1431K 0.30 tolerated(1) benign(0) TCGA-RP-A695-06 8 57353847 57353847 C T PENK Missense_Mutation p.G263E 0.30 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 8 67086886 67086886 G A TRIM55 3'UTR 0.53 TCGA-RP-A695-06 8 69032452 69032452 C A PREX2 Missense_Mutation p.L1176I 0.28 deleterious(0) probably_damaging(0.978) TCGA-RP-A695-06 8 73849078 73849078 G A KCNB2 Silent p.R496R 0.39 TCGA-RP-A695-06 8 77617395 77617395 C T ZFHX4 Missense_Mutation p.P358S 0.42 possibly_damaging(0.803) TCGA-RP-A695-06 8 93003911 93003911 C T RUNX1T1 Missense_Mutation p.R327Q 0.37 tolerated(0.07) possibly_damaging(0.863) TCGA-RP-A695-06 8 95183143 95183143 G A CDH17 Missense_Mutation p.S285L 0.40 deleterious(0.05) benign(0.114) TCGA-RP-A695-06 8 99440867 99440879 CCCTGGCGAGGAC - KCNS2 Frame_Shift_Del p.P221Lfs*36 0.22 TCGA-RP-A695-06 9 104357236 104357236 G A PPP3R2 5'UTR 0.53 TCGA-RP-A695-06 9 113563048 113563048 C T MUSK Missense_Mutation p.S797F 0.73 deleterious(0) probably_damaging(0.995) TCGA-RP-A695-06 9 115421780 115421780 C T KIAA1958 Missense_Mutation p.R528C 0.40 tolerated(0.05) benign(0.297) TCGA-RP-A695-06 9 125239894 125239894 G A OR1J1 Silent p.F104F 0.71 TCGA-RP-A695-06 9 131477090 131477090 C T PKN3 Missense_Mutation p.P533L 0.50 tolerated(0.12) benign(0.303) TCGA-RP-A695-06 9 137778284 137778284 G A FCN2 Missense_Mutation p.E190K 0.54 deleterious(0.01) possibly_damaging(0.583) TCGA-RP-A695-06 9 138651666 138651666 C T KCNT1 Silent p.V332V 0.68 TCGA-RP-A695-06 9 21239757 21239757 C T IFNA14 Missense_Mutation p.E60K 0.58 tolerated(0.12) benign(0.052) TCGA-RP-A695-06 9 21974699 21974700 CT - CDKN2A Frame_Shift_Del p.S43Lfs*76 0.46 TCGA-RP-A695-06 9 34256068 34256068 C T KIF24 Silent p.T1179T 0.72 TCGA-RP-A695-06 9 39118046 39118046 A C CNTNAP3 Intron 0.57 TCGA-RP-A695-06 9 5463114 5463114 C T CD274 Silent p.V225V 0.60 TCGA-RP-A695-06 9 72131301 72131301 C T APBA1 Missense_Mutation p.E276K 0.75 deleterious_low_confidence(0) benign(0.108) TCGA-RP-A695-06 9 78710855 78710855 G A PCSK5 Missense_Mutation p.G315E 0.47 deleterious(0) probably_damaging(1) TCGA-RP-A695-06 9 8485973 8485973 A G PTPRD Silent p.N948N 0.61 TCGA-RP-A695-06 9 86452364 86452364 C T KIF27 Missense_Mutation p.G1253E 0.61 tolerated(1) benign(0.001) TCGA-RP-A695-06 X 101395955 101395955 C T TCEAL6 Missense_Mutation p.G117R 0.82 deleterious(0) probably_damaging(0.962) TCGA-RP-A695-06 X 103349062 103349062 G A SLC25A53 Silent p.F293F 0.86 TCGA-RP-A695-06 X 106046203 106046203 G C TBC1D8B Silent p.G40G 0.69 TCGA-RP-A695-06 X 107840692 107840692 G A COL4A5 Missense_Mutation p.G558D 0.66 unknown(0) TCGA-RP-A695-06 X 123615810 123615810 T A TENM1 Missense_Mutation p.S1241C 0.81 deleterious(0.01) possibly_damaging(0.865) TCGA-RP-A695-06 X 12906044 12906044 C T TLR7 Missense_Mutation p.P806L 0.78 deleterious(0) probably_damaging(0.989) TCGA-RP-A695-06 X 12906495 12906495 G A TLR7 Silent p.V956V 0.67 TCGA-RP-A695-06 X 132160571 132160571 G A USP26 Missense_Mutation p.P560S 0.77 deleterious(0.05) probably_damaging(0.973) TCGA-RP-A695-06 X 135430406 135430406 C T GPR112 Missense_Mutation p.S1514F 0.71 deleterious(0.02) benign(0.016) TCGA-RP-A695-06 X 148797724 148797724 C T MAGEA11 Missense_Mutation p.S193F 0.77 tolerated(0.17) possibly_damaging(0.883) TCGA-RP-A695-06 X 149912879 149912879 C T MTMR1 Missense_Mutation p.P499L 0.60 deleterious(0) probably_damaging(0.999) TCGA-RP-A695-06 X 151869973 151869973 C T MAGEA6 Silent p.I221I 0.70 TCGA-RP-A695-06 X 16168609 16168609 T A GRPR Missense_Mutation p.Y199N 0.73 tolerated(0.05) probably_damaging(0.993) TCGA-RP-A695-06 X 21534731 21534731 G A CNKSR2 Nonsense_Mutation p.W313* 0.71 TCGA-RP-A695-06 X 3241106 3241106 G A MXRA5 Missense_Mutation p.L874F 0.65 tolerated(0.72) benign(0.003) TCGA-RP-A695-06 X 3592752 3592752 G A PRKX Silent p.F74F 0.65 TCGA-RP-A695-06 X 49019251 49019251 C T MAGIX Silent p.A8A 0.70 TCGA-RP-A695-06 X 53573714 53573714 T C HUWE1 Missense_Mutation p.K3570R 0.65 unknown(0) TCGA-RP-A695-06 X 53611302 53611302 T C HUWE1 Missense_Mutation p.N1669D 0.64 probably_damaging(0.995) TCGA-RP-A695-06 X 57515381 57515381 G A FAAH2 3'UTR 0.67 TCGA-RP-A695-06 X 65479980 65479980 C T HEPH Silent p.F1079F 0.77 TCGA-RP-A695-06 X 66765648 66765648 C T AR Silent p.S220S 0.65 TCGA-RP-A695-06 X 73040680 73040680 C T XIST RNA 0.68 TCGA-RP-A695-06 X 73061295 73061295 G A XIST RNA 0.80 TCGA-RP-A695-06 X 73961697 73961697 C T KIAA2022 Missense_Mutation p.E899K 0.87 tolerated(0.13) benign(0.009) TCGA-RP-A695-06 X 73962431 73962431 G A KIAA2022 Missense_Mutation p.S654L 0.65 deleterious(0.04) benign(0.008) TCGA-RP-A695-06 X 73962837 73962837 C T KIAA2022 Missense_Mutation p.D519N 0.68 deleterious(0.03) probably_damaging(0.982) TCGA-RP-A695-06 X 75004235 75004235 G A MAGEE2 Missense_Mutation p.L218F 0.76 tolerated(0.1) benign(0.305) TCGA-RP-A695-06 X 77301833 77301833 G A ATP7A Silent p.R1423R 0.67 TCGA-RP-A695-06 X 83129217 83129217 G A CYLC1 Missense_Mutation p.E501K 0.77 tolerated(1) possibly_damaging(0.542) TCGA-RP-A6K9-06 10 38299654 38299654 G C ZNF33A 5'UTR 0.08 TCGA-RP-A6K9-06 10 74619056 74619056 A G MCU Silent p.Q114Q 0.32 TCGA-RP-A6K9-06 10 75561200 75561200 C A ZSWIM8 Missense_Mutation p.Q1818K 0.10 deleterious(0.01) possibly_damaging(0.486) TCGA-RP-A6K9-06 10 909704 909704 G T LARP4B Missense_Mutation p.L137M 0.07 tolerated(0.26) benign(0.007) TCGA-RP-A6K9-06 10 98087332 98087332 G A DNTT Missense_Mutation p.V328I 0.25 tolerated(0.28) benign(0.032) TCGA-RP-A6K9-06 11 5410856 5410856 C A OR51M1 Silent p.S76S 0.24 TCGA-RP-A6K9-06 11 6477791 6477791 C T TRIM3 Missense_Mutation p.V389M 0.12 tolerated(0.2) possibly_damaging(0.736) TCGA-RP-A6K9-06 11 7022401 7022401 T A ZNF214 Silent p.I171I 0.14 TCGA-RP-A6K9-06 12 49218985 49218985 C T CACNB3 Missense_Mutation p.R178W 0.30 deleterious(0) probably_damaging(0.999) TCGA-RP-A6K9-06 12 57440852 57440852 G T MYO1A Missense_Mutation p.S157Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-RP-A6K9-06 14 102506996 102506996 A C DYNC1H1 Missense_Mutation p.E3976A 0.19 benign(0.02) TCGA-RP-A6K9-06 14 21970035 21970035 T C METTL3 Missense_Mutation p.E245G 0.10 deleterious(0) probably_damaging(0.986) TCGA-RP-A6K9-06 14 88883188 88883188 G T SPATA7 Missense_Mutation p.K124N 0.10 deleterious(0) benign(0.407) TCGA-RP-A6K9-06 14 94929429 94929429 C A SERPINA9 3'UTR 0.08 TCGA-RP-A6K9-06 15 20644012 20644012 G A HERC2P3 RNA 0.07 TCGA-RP-A6K9-06 15 43817690 43817690 T C MAP1A Missense_Mutation p.I1340T 0.13 benign(0.047) TCGA-RP-A6K9-06 15 55916540 55916540 C A PRTG Missense_Mutation p.K1031N 0.14 deleterious(0) probably_damaging(0.987) TCGA-RP-A6K9-06 15 65625743 65625743 A C IGDCC3 Silent p.P278P 0.16 TCGA-RP-A6K9-06 16 30429202 30429202 C T ZNF771 Silent p.F156F 0.60 TCGA-RP-A6K9-06 16 56920296 56920296 C T SLC12A3 Missense_Mutation p.T649M 0.22 deleterious(0) probably_damaging(0.989) TCGA-RP-A6K9-06 16 81971411 81971411 C T PLCG2 Missense_Mutation p.T1034M 0.27 deleterious(0.01) possibly_damaging(0.888) TCGA-RP-A6K9-06 18 21461937 21461937 G A LAMA3 Missense_Mutation p.R1717H 0.27 benign(0.036) TCGA-RP-A6K9-06 18 48422258 48422258 A - ME2 Frame_Shift_Del p.G25Afs*6 0.30 TCGA-RP-A6K9-06 19 15366313 15366313 C G BRD4 Missense_Mutation p.E614D 0.06 benign(0.217) TCGA-RP-A6K9-06 19 3118942 3118942 A T GNA11 Missense_Mutation p.Q209L 0.20 deleterious(0) probably_damaging(0.911) TCGA-RP-A6K9-06 19 4423870 4423870 A T CHAF1A Missense_Mutation p.K459M 0.11 deleterious(0) probably_damaging(0.996) TCGA-RP-A6K9-06 19 4433225 4433225 G A CHAF1A Missense_Mutation p.E788K 0.12 tolerated(0.13) possibly_damaging(0.836) TCGA-RP-A6K9-06 19 56539579 56539579 G T NLRP5 Silent p.G660G 0.20 TCGA-RP-A6K9-06 19 57293432 57293432 C A ZIM2 Nonsense_Mutation p.E179* 0.16 TCGA-RP-A6K9-06 1 150679223 150679223 C G HORMAD1 Missense_Mutation p.E204Q 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-RP-A6K9-06 1 161017590 161017590 T C ARHGAP30 Missense_Mutation p.Q1074R 0.17 deleterious_low_confidence(0) benign(0.221) TCGA-RP-A6K9-06 1 17395681 17395681 C T PADI2 Missense_Mutation p.R619H 0.05 tolerated(0.1) possibly_damaging(0.901) TCGA-RP-A6K9-06 1 185276267 185276267 T C IVNS1ABP Missense_Mutation p.E179G 0.08 deleterious(0) probably_damaging(0.997) TCGA-RP-A6K9-06 1 196309693 196309693 C T KCNT2 Missense_Mutation p.V521I 0.42 tolerated(0.08) benign(0.403) TCGA-RP-A6K9-06 1 22178643 22178643 C T HSPG2 Missense_Mutation p.G2270R 0.10 possibly_damaging(0.795) TCGA-RP-A6K9-06 1 51869110 51869110 T C EPS15 Missense_Mutation p.N591S 0.37 tolerated(0.47) benign(0.001) TCGA-RP-A6K9-06 20 14665580 14665580 A G MACROD2 Silent p.T131T 0.12 TCGA-RP-A6K9-06 20 35661068 35661068 C T RBL1 Silent p.K794K 0.16 TCGA-RP-A6K9-06 21 10951365 10951365 G A TPTE Missense_Mutation p.T116I 0.04 tolerated(0.08) benign(0.058) TCGA-RP-A6K9-06 21 37758469 37758469 A G CHAF1B Missense_Mutation p.N12S 0.06 deleterious(0.01) possibly_damaging(0.876) TCGA-RP-A6K9-06 22 31927053 31927053 C T SFI1 Silent p.A92A 0.07 TCGA-RP-A6K9-06 2 185801105 185801105 T A ZNF804A Missense_Mutation p.S328T 0.41 tolerated(0.12) benign(0.097) TCGA-RP-A6K9-06 3 195515733 195515733 C G MUC4 Silent p.R906R 0.32 TCGA-RP-A6K9-06 4 113299026 113299026 G T ALPK1 Missense_Mutation p.E31D 0.08 tolerated(0.05) benign(0.429) TCGA-RP-A6K9-06 4 1701427 1701427 A G SLBP Missense_Mutation p.S115P 0.20 deleterious(0.02) probably_damaging(0.936) TCGA-RP-A6K9-06 4 3424226 3424226 C G RGS12 Missense_Mutation p.L988V 0.21 deleterious(0) probably_damaging(0.988) TCGA-RP-A6K9-06 5 132902877 132902877 C T FSTL4 Missense_Mutation p.G54R 0.07 tolerated(0.15) possibly_damaging(0.491) TCGA-RP-A6K9-06 5 140175374 140175374 C T PCDHA2 Silent p.S275S 0.10 TCGA-RP-A6K9-06 5 140223107 140223107 C T PCDHA8 Missense_Mutation p.A734V 0.42 deleterious_low_confidence(0.01) benign(0.003) TCGA-RP-A6K9-06 5 140787998 140787998 G A PCDHGB6 Missense_Mutation p.V77I 0.16 tolerated(0.26) benign(0.376) TCGA-RP-A6K9-06 5 161324294 161324294 T A GABRA1 Missense_Mutation p.F413I 0.10 tolerated(0.12) probably_damaging(0.987) TCGA-RP-A6K9-06 5 177642400 177642400 C T PHYKPL Missense_Mutation p.G320E 0.20 deleterious(0) probably_damaging(0.987) TCGA-RP-A6K9-06 5 36962297 36962297 A G NIPBL Silent p.P177P 0.04 TCGA-RP-A6K9-06 5 74721240 74721240 A G COL4A3BP Missense_Mutation p.Y309H 0.11 deleterious(0.02) benign(0.132) TCGA-RP-A6K9-06 6 24581221 24581221 G A KIAA0319 Silent p.V404V 0.08 TCGA-RP-A6K9-06 6 37429808 37429808 C G CMTR1 Missense_Mutation p.L419V 0.08 deleterious(0.04) probably_damaging(0.951) TCGA-RP-A6K9-06 6 83847917 83847917 T C DOPEY1 Missense_Mutation p.S1386P 0.27 deleterious(0) possibly_damaging(0.709) TCGA-RP-A6K9-06 7 80091839 80091839 G T GNAT3 Silent p.V233V 0.13 TCGA-RP-A6K9-06 7 81689797 81689797 C A CACNA2D1 Missense_Mutation p.V276F 0.11 deleterious(0) probably_damaging(0.986) TCGA-RP-A6K9-06 8 124089365 124089365 T C TBC1D31 Missense_Mutation p.I31T 0.03 deleterious(0.02) possibly_damaging(0.461) TCGA-RP-A6K9-06 8 49643961 49643961 G T EFCAB1 Silent p.R54R 0.06 TCGA-RP-A6K9-06 8 52322116 52322116 G A PXDNL Missense_Mutation p.R690W 0.08 tolerated(0.06) benign(0.015) TCGA-RP-A6K9-06 8 74859009 74859009 T C TCEB1 Missense_Mutation p.I65M 0.05 deleterious(0) probably_damaging(0.961) TCGA-RP-A6K9-06 9 104133746 104133746 C A BAAT Splice_Site 0.15 TCGA-RP-A6K9-06 9 113198779 113198779 C T SVEP1 Missense_Mutation p.G1549S 0.41 probably_damaging(1) TCGA-RP-A6K9-06 9 138707778 138707778 C T CAMSAP1 Missense_Mutation p.A1449T 0.14 deleterious(0.05) benign(0.187) TCGA-RP-A6K9-06 X 45605614 45605614 C A MIR221 RNA 0.13 TCGA-RP-A6K9-06 X 48463351 48463351 C T WDR13 Silent p.C463C 0.15 TCGA-RP-A6K9-06 X 73641770 73641770 G A SLC16A2 Missense_Mutation p.G100S 0.19 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 10 101668887 101668887 G A DNMBP Silent p.S759S 0.26 TCGA-W3-A824-06 10 102027392 102027392 G A CWF19L1 5'UTR 0.38 TCGA-W3-A824-06 10 102238811 102238811 C T WNT8B Missense_Mutation p.S24L 0.32 deleterious(0) probably_damaging(0.966) TCGA-W3-A824-06 10 103751746 103751746 G A C10orf76 Missense_Mutation p.P442L 0.44 deleterious(0) probably_damaging(0.995) TCGA-W3-A824-06 10 104176450 104176450 C A PSD Missense_Mutation p.G116W 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-A824-06 10 105330632 105330632 C T NEURL1 Missense_Mutation p.S30F 0.41 deleterious_low_confidence(0) benign(0.307) TCGA-W3-A824-06 10 105372915 105372915 G A SH3PXD2A Missense_Mutation p.S290F 0.41 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 10 115962010 115962010 G A TDRD1 Missense_Mutation p.E217K 0.43 tolerated(0.09) benign(0.006) TCGA-W3-A824-06 10 121658333 121658333 C T SEC23IP Silent p.T186T 0.33 TCGA-W3-A824-06 10 121658334 121658334 C T SEC23IP Missense_Mutation p.P187S 0.34 tolerated(0.08) benign(0.005) TCGA-W3-A824-06 10 123843471 123843471 C T TACC2 Missense_Mutation p.P486S 0.45 benign(0.004) TCGA-W3-A824-06 10 124013505 124013505 G A TACC2 Splice_Site p.X2928_splice 0.29 TCGA-W3-A824-06 10 124214438 124214438 G A ARMS2 Missense_Mutation p.M65I 0.51 tolerated_low_confidence(0.2) benign(0.005) TCGA-W3-A824-06 10 124248482 124248482 C T HTRA1 Silent p.I179I 0.38 TCGA-W3-A824-06 10 124610044 124610044 G A FAM24B 5'UTR 0.38 TCGA-W3-A824-06 10 127677347 127677347 G A FANK1 Intron 0.37 TCGA-W3-A824-06 10 128192720 128192720 A C C10orf90 Missense_Mutation p.L350W 0.32 tolerated(0.1) benign(0.032) TCGA-W3-A824-06 10 129904482 129904482 C T MKI67 Silent p.K1874K 0.41 TCGA-W3-A824-06 10 129914267 129914267 C T MKI67 Silent p.E135E 0.40 TCGA-W3-A824-06 10 13206151 13206151 G A MCM10 5'UTR 0.37 TCGA-W3-A824-06 10 135101653 135101653 G A TUBGCP2 Missense_Mutation p.P596S 0.42 deleterious(0) possibly_damaging(0.831) TCGA-W3-A824-06 10 135370628 135370628 C T SYCE1 Missense_Mutation p.R136K 0.40 tolerated(0.07) probably_damaging(0.998) TCGA-W3-A824-06 10 16893336 16893336 C T CUBN Nonsense_Mutation p.W3187* 0.29 TCGA-W3-A824-06 10 17085931 17085931 C T CUBN Missense_Mutation p.D1242N 0.40 tolerated(0.78) benign(0.005) TCGA-W3-A824-06 10 17275907 17275907 G A VIM Missense_Mutation p.A287T 0.30 tolerated(0.24) benign(0.134) TCGA-W3-A824-06 10 17865434 17865434 C T MRC1L1 Silent p.I141I 0.46 TCGA-W3-A824-06 10 20106116 20106116 C T PLXDC2 Silent p.I36I 0.35 TCGA-W3-A824-06 10 20465997 20465997 C T PLXDC2 Missense_Mutation p.S318L 0.38 deleterious(0) benign(0.217) TCGA-W3-A824-06 10 25861618 25861618 C T GPR158 Missense_Mutation p.P519S 0.37 deleterious(0) probably_damaging(0.99) TCGA-W3-A824-06 10 25887367 25887367 G A GPR158 Missense_Mutation p.D938N 0.39 tolerated(0.07) benign(0.058) TCGA-W3-A824-06 10 28023676 28023676 T A MKX Missense_Mutation p.N183Y 0.30 deleterious(0.01) benign(0.188) TCGA-W3-A824-06 10 28284074 28284074 G A ARMC4 5'UTR 0.30 TCGA-W3-A824-06 10 28822956 28822956 C T WAC Missense_Mutation p.P24L 0.53 deleterious(0.04) benign(0.011) TCGA-W3-A824-06 10 29580897 29580897 C T LYZL1 Missense_Mutation p.A80V 0.44 tolerated(0.5) benign(0.439) TCGA-W3-A824-06 10 30316019 30316019 G A KIAA1462 Missense_Mutation p.R1020W 0.45 tolerated(0.08) benign(0.01) TCGA-W3-A824-06 10 30318220 30318220 C T KIAA1462 Missense_Mutation p.R286Q 0.33 tolerated(0.24) benign(0.346) TCGA-W3-A824-06 10 34558811 34558811 G A PARD3 Nonsense_Mutation p.R1068* 0.35 TCGA-W3-A824-06 10 37414827 37414827 G A ANKRD30A 5'UTR 0.42 TCGA-W3-A824-06 10 37482152 37482152 C T ANKRD30A Silent p.A804A 0.34 TCGA-W3-A824-06 10 37508414 37508414 G A ANKRD30A Silent p.R1202R 0.35 TCGA-W3-A824-06 10 38647417 38647417 C T HSD17B7P2 RNA 0.40 TCGA-W3-A824-06 10 38647418 38647418 C T HSD17B7P2 RNA 0.40 TCGA-W3-A824-06 10 45644319 45644319 C T RP11-445N18.7 RNA 0.44 TCGA-W3-A824-06 10 48383954 48383954 G A RBP3 Missense_Mutation p.P1093L 0.51 deleterious(0) benign(0) TCGA-W3-A824-06 10 48383955 48383955 G A RBP3 Missense_Mutation p.P1093S 0.51 tolerated(0.39) benign(0) TCGA-W3-A824-06 10 48388788 48388788 T C RBP3 Missense_Mutation p.H697R 0.35 tolerated(0.19) benign(0.227) TCGA-W3-A824-06 10 48388981 48388981 G A RBP3 Missense_Mutation p.H633Y 0.31 deleterious(0) benign(0.066) TCGA-W3-A824-06 10 49663097 49663097 C T ARHGAP22 Missense_Mutation p.R263K 0.32 tolerated(1) benign(0.006) TCGA-W3-A824-06 10 5042635 5042635 T C AKR1C2 Intron 0.41 TCGA-W3-A824-06 10 50574292 50574292 G A DRGX Silent p.L226L 0.33 TCGA-W3-A824-06 10 50684306 50684306 G A ERCC6 Silent p.F779F 0.47 TCGA-W3-A824-06 10 50827835 50827835 G A CHAT Missense_Mutation p.R151Q 0.47 tolerated(1) benign(0.002) TCGA-W3-A824-06 10 5204861 5204861 G A AKR1CL1 Silent p.I72I 0.40 TCGA-W3-A824-06 10 52389409 52389409 C T RP11-50E11.3 RNA 0.53 TCGA-W3-A824-06 10 52588037 52588037 C T A1CF Missense_Mutation p.G216E 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 10 54031118 54031118 G A PRKG1 Silent p.L394L 0.32 TCGA-W3-A824-06 10 5498675 5498675 C T NET1 Silent p.F503F 0.31 TCGA-W3-A824-06 10 55582896 55582896 C T PCDH15 Silent p.K1532K 0.22 TCGA-W3-A824-06 10 56106174 56106174 C T PCDH15 Missense_Mutation p.G182E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 10 5790162 5790162 C T FAM208B Missense_Mutation p.S1593F 0.33 deleterious(0) probably_damaging(0.982) TCGA-W3-A824-06 10 58118376 58118376 G A ZWINT Nonsense_Mutation p.R245* 0.33 TCGA-W3-A824-06 10 60562912 60562912 G T BICC1 Silent p.G697G 0.26 TCGA-W3-A824-06 10 61874078 61874078 G A ANK3 Silent p.F951F 0.31 TCGA-W3-A824-06 10 63170314 63170314 C T TMEM26 Silent p.A291A 0.48 TCGA-W3-A824-06 10 64382891 64382891 C T ZNF365 Missense_Mutation p.S337L 0.31 deleterious_low_confidence(0.02) benign(0.024) TCGA-W3-A824-06 10 69672746 69672746 C T SIRT1 Missense_Mutation p.P625S 0.33 tolerated(0.57) benign(0.029) TCGA-W3-A824-06 10 70992563 70992563 C T HKDC1 Silent p.F90F 0.38 TCGA-W3-A824-06 10 72061176 72061176 G A LRRC20 Silent p.I163I 0.51 TCGA-W3-A824-06 10 75051450 75051450 A G TTC18 Silent p.F726F 0.57 TCGA-W3-A824-06 10 75406955 75406955 G A SYNPO2L Missense_Mutation p.P819S 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 10 7769694 7769694 G A ITIH2 Silent p.R394R 0.46 TCGA-W3-A824-06 10 78832900 78832900 G A KCNMA1 Silent p.L568L 0.45 TCGA-W3-A824-06 10 79579658 79579658 G A DLG5 Missense_Mutation p.S1174F 0.42 tolerated(0.06) probably_damaging(0.965) TCGA-W3-A824-06 10 81680759 81680759 G A MBL1P RNA 0.22 TCGA-W3-A824-06 10 84711289 84711289 C T NRG3 Silent p.I373I 0.32 TCGA-W3-A824-06 10 85991612 85991612 C T LRIT1 3'UTR 0.40 TCGA-W3-A824-06 10 88213452 88213452 C T WAPAL Missense_Mutation p.A932T 0.05 deleterious(0) possibly_damaging(0.811) TCGA-W3-A824-06 10 89685289 89685289 A - PTEN Frame_Shift_Del p.N63Tfs*36 0.38 TCGA-W3-A824-06 10 90537840 90537840 C T LIPN Silent p.L346L 0.23 TCGA-W3-A824-06 10 93614813 93614813 C T TNKS2 Missense_Mutation p.T948I 0.20 tolerated(0.18) benign(0.103) TCGA-W3-A824-06 10 93614814 93614814 C T TNKS2 Silent p.T948T 0.22 TCGA-W3-A824-06 10 96454763 96454763 G A CYP2C18 Missense_Mutation p.D191N 0.24 deleterious(0.04) benign(0.323) TCGA-W3-A824-06 10 96466699 96466699 C T CYP2C18 Silent p.F267F 0.34 TCGA-W3-A824-06 10 96534833 96534833 C T CYP2C19 Missense_Mutation p.P63S 0.48 tolerated(0.06) possibly_damaging(0.629) TCGA-W3-A824-06 10 96827158 96827158 G A CYP2C8 Intron 0.32 TCGA-W3-A824-06 10 98714745 98714745 G A LCOR Missense_Mutation p.G123E 0.35 tolerated(0.25) benign(0.011) TCGA-W3-A824-06 10 99683036 99683036 G A CRTAC1 Silent p.A181A 0.38 TCGA-W3-A824-06 11 100211368 100211368 C T CNTN5 Silent p.T968T 0.38 TCGA-W3-A824-06 11 101375003 101375003 C T TRPC6 Missense_Mutation p.E233K 0.35 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 11 102480670 102480670 G A MMP20 Silent p.F205F 0.36 TCGA-W3-A824-06 11 102826415 102826415 G A MMP13 Missense_Mutation p.A7V 0.31 tolerated(0.25) benign(0.002) TCGA-W3-A824-06 11 105836771 105836771 G A GRIA4 Intron 0.32 TCGA-W3-A824-06 11 105924486 105924486 A T KBTBD3 Nonsense_Mutation p.Y310* 0.33 TCGA-W3-A824-06 11 10647696 10647696 C T MRVI1 Nonsense_Mutation p.W395* 0.38 TCGA-W3-A824-06 11 10647939 10647939 C T MRVI1 Silent p.G314G 0.38 TCGA-W3-A824-06 11 107299795 107299795 G A CWF19L2 Missense_Mutation p.P388L 0.39 tolerated(0.11) benign(0.029) TCGA-W3-A824-06 11 107578520 107578520 C T SLN 3'UTR 0.40 TCGA-W3-A824-06 11 107578521 107578521 C A SLN 3'UTR 0.39 TCGA-W3-A824-06 11 113281343 113281343 G A DRD2 3'UTR 0.43 TCGA-W3-A824-06 11 113281344 113281344 G A DRD2 3'UTR 0.46 TCGA-W3-A824-06 11 114569171 114569171 C T NXPE2 Silent p.F179F 0.32 TCGA-W3-A824-06 11 117074509 117074509 G A TAGLN Missense_Mutation p.A124T 0.30 tolerated(0.08) probably_damaging(0.945) TCGA-W3-A824-06 11 117152625 117152625 C T RNF214 Nonsense_Mutation p.Q451* 0.37 TCGA-W3-A824-06 11 117389416 117389416 G A DSCAML1 Silent p.F485F 0.38 TCGA-W3-A824-06 11 117789184 117789184 G A TMPRSS13 Missense_Mutation p.P131S 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-W3-A824-06 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.31 tolerated(0.16) benign(0.04) TCGA-W3-A824-06 11 118375796 118375796 C T KMT2A Silent p.S3063S 0.33 TCGA-W3-A824-06 11 118769652 118769652 G A BCL9L Silent p.F1324F 0.37 TCGA-W3-A824-06 11 120312885 120312885 C T ARHGEF12 Missense_Mutation p.H426Y 0.38 tolerated(0.48) benign(0.02) TCGA-W3-A824-06 11 121000365 121000365 G T TECTA Nonsense_Mutation p.E796* 0.35 TCGA-W3-A824-06 11 121037468 121037468 G A TECTA Silent p.G1855G 0.28 TCGA-W3-A824-06 11 12247905 12247905 C T MICAL2 Silent p.L626L 0.42 TCGA-W3-A824-06 11 123483526 123483526 C T GRAMD1B Silent p.I516I 0.54 TCGA-W3-A824-06 11 123676162 123676162 C T OR6M1 Missense_Mutation p.R299K 0.31 tolerated(0.91) benign(0.012) TCGA-W3-A824-06 11 123755252 123755252 C T TMEM225 Silent p.L91L 0.22 TCGA-W3-A824-06 11 123886904 123886904 G A OR10G4 Missense_Mutation p.G208D 0.21 tolerated(0.07) probably_damaging(0.939) TCGA-W3-A824-06 11 123886905 123886905 C A OR10G4 Silent p.G208G 0.21 TCGA-W3-A824-06 11 124623502 124623502 G A ESAM 3'UTR 0.44 TCGA-W3-A824-06 11 1247931 1247934 CCTG AAA MUC5B Frame_Shift_Del p.P96Kfs*27 0.24 TCGA-W3-A824-06 11 1257636 1257636 A G MUC5B Silent p.Q967Q 0.33 TCGA-W3-A824-06 11 1269841 1269841 G A MUC5B Missense_Mutation p.G3911R 0.22 unknown(0) TCGA-W3-A824-06 11 1270332 1270332 G A MUC5B Silent p.R4074R 0.12 TCGA-W3-A824-06 11 1298461 1298461 G T TOLLIP Silent p.P211P 0.34 TCGA-W3-A824-06 11 130108483 130108483 G A ZBTB44 Missense_Mutation p.P375S 0.50 tolerated(0.08) probably_damaging(0.999) TCGA-W3-A824-06 11 132184631 132184631 G A NTM Intron 0.42 TCGA-W3-A824-06 11 1643004 1643004 G A KRTAP5-4 Missense_Mutation p.S107F 0.12 deleterious_low_confidence(0) unknown(0) TCGA-W3-A824-06 11 17170264 17170264 A T PIK3C2A Missense_Mutation p.D466E 0.41 deleterious(0.01) possibly_damaging(0.688) TCGA-W3-A824-06 11 17430011 17430011 G A ABCC8 Silent p.F916F 0.27 TCGA-W3-A824-06 11 17544968 17544968 C T USH1C Missense_Mutation p.E273K 0.28 deleterious(0.02) benign(0.434) TCGA-W3-A824-06 11 22696535 22696535 G A GAS2 Silent p.L40L 0.22 TCGA-W3-A824-06 11 30255279 30255279 G A FSHB Missense_Mutation p.D108N 0.30 tolerated(0.18) benign(0.012) TCGA-W3-A824-06 11 30937126 30937126 C T DCDC1 Missense_Mutation p.M1195I 0.37 tolerated(0.07) benign(0) TCGA-W3-A824-06 11 320725 320725 G A IFITM3 Missense_Mutation p.A30V 0.43 tolerated(0.12) benign(0.033) TCGA-W3-A824-06 11 33564133 33564133 C T KIAA1549L Missense_Mutation p.P45S 0.36 tolerated_low_confidence(0.21) benign(0.001) TCGA-W3-A824-06 11 34155890 34155890 C T NAT10 Missense_Mutation p.R587C 0.43 deleterious(0.03) benign(0.083) TCGA-W3-A824-06 11 36595423 36595423 C T RAG1 Missense_Mutation p.A190V 0.36 tolerated_low_confidence(0.12) benign(0.005) TCGA-W3-A824-06 11 36654959 36654959 C T C11orf74 Missense_Mutation p.R88C 0.48 tolerated(0.25) benign(0.001) TCGA-W3-A824-06 11 36669627 36669627 C T C11orf74 Silent p.I140I 0.29 TCGA-W3-A824-06 11 3700815 3700815 C T NUP98 Missense_Mutation p.R1681K 0.40 tolerated(0.18) benign(0.069) TCGA-W3-A824-06 11 4703487 4703487 G A OR51E2 Missense_Mutation p.S152F 0.35 tolerated(0.5) benign(0.009) TCGA-W3-A824-06 11 47360171 47360171 G A MYBPC3 Silent p.F736F 0.24 TCGA-W3-A824-06 11 47364400 47364400 C T MYBPC3 Missense_Mutation p.E480K 0.48 deleterious(0) probably_damaging(0.955) TCGA-W3-A824-06 11 4825031 4825031 C T OR52R1 Missense_Mutation p.D194N 0.30 tolerated(0.09) probably_damaging(1) TCGA-W3-A824-06 11 48347057 48347057 C T OR4C3 Missense_Mutation p.L189F 0.23 tolerated(1) benign(0.023) TCGA-W3-A824-06 11 4842844 4842844 C T OR51F2 Missense_Mutation p.L77F 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 11 4936045 4936045 G A OR51G2 Silent p.F283F 0.37 TCGA-W3-A824-06 11 4945291 4945291 C T OR51G1 Silent p.E93E 0.36 TCGA-W3-A824-06 11 4967770 4967770 C T OR51A4 Missense_Mutation p.M187I 0.34 tolerated(0.07) possibly_damaging(0.694) TCGA-W3-A824-06 11 4967848 4967848 G A OR51A4 Silent p.F161F 0.31 TCGA-W3-A824-06 11 4976414 4976414 G A OR51A2 Missense_Mutation p.S177F 0.45 deleterious(0.02) benign(0.429) TCGA-W3-A824-06 11 49831552 49831552 G A RP11-707M1.1 RNA 0.40 TCGA-W3-A824-06 11 500543 500543 G A RNH1 Silent p.V71V 0.35 TCGA-W3-A824-06 11 51515475 51515475 C T OR4C46 Missense_Mutation p.S65F 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-A824-06 11 5153312 5153312 G A OR52A5 Silent p.I187I 0.34 TCGA-W3-A824-06 11 5221831 5221831 G A OR51V1 Missense_Mutation p.P34S 0.36 tolerated(0.4) benign(0.009) TCGA-W3-A824-06 11 55032634 55032634 C T TRIM48 Silent p.F101F 0.37 TCGA-W3-A824-06 11 55110809 55110809 G A OR4A16 Missense_Mutation p.V45M 0.40 tolerated_low_confidence(0.19) benign(0.027) TCGA-W3-A824-06 11 5529671 5529671 G A UBQLN3 Missense_Mutation p.P373L 0.32 tolerated(0.1) benign(0.365) TCGA-W3-A824-06 11 5529959 5529959 G A UBQLN3 Missense_Mutation p.P277L 0.40 deleterious(0) possibly_damaging(0.807) TCGA-W3-A824-06 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-W3-A824-06 11 55371799 55371799 C T OR4C11 Silent p.Q17Q 0.79 TCGA-W3-A824-06 11 55432843 55432843 G A OR4C6 Silent p.L67L 0.28 TCGA-W3-A824-06 11 55432844 55432844 G T OR4C6 Missense_Mutation p.D68Y 0.29 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-W3-A824-06 11 55579356 55579356 G A OR5L1 Nonsense_Mutation p.W138* 0.33 TCGA-W3-A824-06 11 55861225 55861225 C T OR8I2 Missense_Mutation p.P148S 0.35 tolerated(1) benign(0.104) TCGA-W3-A824-06 11 55872879 55872879 G A OR8H2 Missense_Mutation p.D121N 0.34 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 11 55904517 55904517 T C OR8J3 Silent p.L226L 0.42 TCGA-W3-A824-06 11 55999841 55999841 C T OR5T2 Missense_Mutation p.R274K 0.33 tolerated(0.12) benign(0.119) TCGA-W3-A824-06 11 56086579 56086579 C T OR8K3 Missense_Mutation p.S266F 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-W3-A824-06 11 56258567 56258567 G A OR5M8 Missense_Mutation p.P94S 0.34 tolerated(0.57) benign(0) TCGA-W3-A824-06 11 56310548 56310548 G A OR5M11 Silent p.F62F 0.43 TCGA-W3-A824-06 11 57076733 57076733 G A TNKS1BP1 Missense_Mutation p.P1151L 0.35 deleterious(0) possibly_damaging(0.9) TCGA-W3-A824-06 11 57076734 57076734 G A TNKS1BP1 Missense_Mutation p.P1151S 0.35 tolerated(0.15) benign(0.103) TCGA-W3-A824-06 11 57147203 57147203 C T PRG3 Missense_Mutation p.E47K 0.39 tolerated(0.09) benign(0.245) TCGA-W3-A824-06 11 58035082 58035082 G A OR10W1 Silent p.I83I 0.44 TCGA-W3-A824-06 11 5809770 5809770 C T OR52N1 Missense_Mutation p.E93K 0.44 tolerated(0.07) benign(0.012) TCGA-W3-A824-06 11 58126539 58126539 C T OR5B17 Missense_Mutation p.E2K 0.49 tolerated_low_confidence(0.15) benign(0.008) TCGA-W3-A824-06 11 58190735 58190735 C T OR5B2 5'UTR 0.27 TCGA-W3-A824-06 11 58605806 58605806 G A GLYATL2 Silent p.N38N 0.32 TCGA-W3-A824-06 11 58607015 58607015 G A GLYATL2 Missense_Mutation p.S24F 0.38 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 11 59420001 59420001 A T PATL1 Silent p.P454P 0.35 TCGA-W3-A824-06 11 59480917 59480917 C T OR10V1 Silent p.R134R 0.38 TCGA-W3-A824-06 11 59596955 59596955 C T GIF 3'UTR 0.37 TCGA-W3-A824-06 11 60714174 60714174 G A SLC15A3 Silent p.F226F 0.34 TCGA-W3-A824-06 11 61118552 61118552 G A CYB561A3 Silent p.L223L 0.42 TCGA-W3-A824-06 11 61291955 61291955 C T SYT7 Silent p.L299L 0.39 TCGA-W3-A824-06 11 61503793 61503793 G A DAGLA Missense_Mutation p.V448I 0.40 tolerated(1) benign(0.024) TCGA-W3-A824-06 11 61560071 61560071 G A TMEM258 5'UTR 0.39 TCGA-W3-A824-06 11 62434536 62434536 A C METTL12 3'UTR 0.38 TCGA-W3-A824-06 11 62760747 62760747 G A SLC22A8 Missense_Mutation p.P531S 0.39 tolerated(0.36) possibly_damaging(0.662) TCGA-W3-A824-06 11 62910901 62910901 C T SLC22A24 Silent p.V117V 0.26 TCGA-W3-A824-06 11 63065131 63065131 C T SLC22A10 Silent p.V254V 0.45 TCGA-W3-A824-06 11 63276375 63276375 G A LGALS12 Nonsense_Mutation p.W118* 0.38 TCGA-W3-A824-06 11 63884829 63884829 C A FLRT1 Silent p.R364R 0.17 TCGA-W3-A824-06 11 64026408 64026408 C T PLCB3 Silent p.D435D 0.24 TCGA-W3-A824-06 11 64088476 64088476 T C PRDX5 Intron 0.48 TCGA-W3-A824-06 11 64111826 64111826 G A CCDC88B Missense_Mutation p.A605T 0.10 tolerated_low_confidence(0.31) benign(0.006) TCGA-W3-A824-06 11 64594857 64594857 G A CDC42BPG Silent p.F1388F 0.34 TCGA-W3-A824-06 11 64695291 64695291 C T PPP2R5B Silent p.F138F 0.42 TCGA-W3-A824-06 11 64695892 64695892 C T PPP2R5B Silent p.F239F 0.35 TCGA-W3-A824-06 11 65003941 65003941 C T SLC22A20 RNA 0.62 TCGA-W3-A824-06 11 65046230 65046230 G A POLA2 Missense_Mutation p.R164Q 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 11 65634504 65634504 G A EFEMP2 Missense_Mutation p.T406M 0.26 deleterious(0.02) possibly_damaging(0.714) TCGA-W3-A824-06 11 65998088 65998088 C T PACS1 Missense_Mutation p.P482S 0.39 tolerated(0.3) benign(0.006) TCGA-W3-A824-06 11 66191631 66191631 C T NPAS4 Missense_Mutation p.P424S 0.33 deleterious(0.01) possibly_damaging(0.884) TCGA-W3-A824-06 11 66191632 66191632 C T NPAS4 Missense_Mutation p.P424L 0.32 deleterious(0) probably_damaging(0.946) TCGA-W3-A824-06 11 6650696 6650696 C T DCHS1 Silent p.E1716E 0.15 TCGA-W3-A824-06 11 67804056 67804056 G A NDUFS8 Missense_Mutation p.R210Q 0.31 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-W3-A824-06 11 67811078 67811078 G A TCIRG1 Nonsense_Mutation p.W224* 0.56 TCGA-W3-A824-06 11 67811079 67811079 G A TCIRG1 Nonsense_Mutation p.W224* 0.56 TCGA-W3-A824-06 11 6789495 6789495 C T OR2AG2 Missense_Mutation p.E232K 0.37 tolerated(0.11) benign(0.12) TCGA-W3-A824-06 11 68337300 68337301 - AA PPP6R3 Frame_Shift_Ins p.N406Kfs*20 0.22 TCGA-W3-A824-06 11 68478377 68478377 C T MTL5 Silent p.T433T 0.53 TCGA-W3-A824-06 11 68512495 68512495 G A MTL5 Missense_Mutation p.P239S 0.40 deleterious(0.04) probably_damaging(0.992) TCGA-W3-A824-06 11 68773548 68773548 G A MRGPRF Missense_Mutation p.P77L 0.29 deleterious(0) probably_damaging(0.989) TCGA-W3-A824-06 11 69063066 69063066 C T MYEOV Missense_Mutation p.P50L 0.31 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-W3-A824-06 11 69466056 69466056 C T CCND1 3'UTR 0.38 TCGA-W3-A824-06 11 69466057 69466057 C T CCND1 3'UTR 0.38 TCGA-W3-A824-06 11 6953608 6953608 C T ZNF215 Silent p.T35T 0.37 TCGA-W3-A824-06 11 7022184 7022184 C T ZNF214 Missense_Mutation p.E244K 0.33 tolerated(0.25) benign(0.43) TCGA-W3-A824-06 11 7110423 7110423 C T RBMXL2 Silent p.L24L 0.40 TCGA-W3-A824-06 11 75902711 75902711 G A WNT11 Silent p.L263L 0.45 TCGA-W3-A824-06 11 76164389 76164389 C T C11orf30 Missense_Mutation p.R68W 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-W3-A824-06 11 76893018 76893018 G A MYO7A Missense_Mutation p.E976K 0.57 tolerated(0.97) benign(0.1) TCGA-W3-A824-06 11 76910820 76910820 G A MYO7A Silent p.K1603K 0.44 TCGA-W3-A824-06 11 7981767 7981767 G A NLRP10 Silent p.F464F 0.28 TCGA-W3-A824-06 11 811727 811727 C T RPLP2 Intron 0.31 TCGA-W3-A824-06 11 82443566 82443566 G A FAM181B Silent p.T402T 0.10 TCGA-W3-A824-06 11 84028211 84028211 C T DLG2 Intron 0.39 TCGA-W3-A824-06 11 85722154 85722154 G A PICALM Silent p.N228N 0.28 TCGA-W3-A824-06 11 87032317 87032317 C T TMEM135 Missense_Mutation p.P440L 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A824-06 11 87032510 87032510 T C TMEM135 3'UTR 0.33 TCGA-W3-A824-06 11 88027551 88027551 G A CTSC Missense_Mutation p.R339C 0.34 deleterious(0.03) possibly_damaging(0.661) TCGA-W3-A824-06 11 89182663 89182663 C T NOX4 Silent p.L98L 0.38 TCGA-W3-A824-06 11 89768436 89768436 G A TRIM49C Missense_Mutation p.M19I 0.38 deleterious(0.03) benign(0.214) TCGA-W3-A824-06 11 92498183 92498183 G A FAT3 Missense_Mutation p.D1375N 0.26 possibly_damaging(0.829) TCGA-W3-A824-06 11 92534169 92534169 G A FAT3 Missense_Mutation p.G2664S 0.35 benign(0.245) TCGA-W3-A824-06 11 93104352 93104352 C T CCDC67 Missense_Mutation p.S232L 0.33 tolerated(0.22) benign(0.045) TCGA-W3-A824-06 11 93797595 93797595 G A HEPHL1 Missense_Mutation p.E243K 0.55 deleterious(0.03) possibly_damaging(0.7) TCGA-W3-A824-06 11 9853888 9853888 G A SBF2 Missense_Mutation p.R1179C 0.28 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 101510498 101510498 G A ANO4 Missense_Mutation p.R796Q 0.38 tolerated(0.63) benign(0.065) TCGA-W3-A824-06 12 101510519 101510519 G A ANO4 Missense_Mutation p.R803Q 0.37 tolerated(0.26) benign(0.082) TCGA-W3-A824-06 12 101551134 101551134 C T SLC5A8 Missense_Mutation p.G586R 0.24 deleterious(0.01) possibly_damaging(0.557) TCGA-W3-A824-06 12 102295068 102295068 G A DRAM1 Splice_Site p.X67_splice 0.35 TCGA-W3-A824-06 12 102869422 102869422 G A IGF1 Silent p.F73F 0.29 TCGA-W3-A824-06 12 104060111 104060111 C T STAB2 Missense_Mutation p.P689S 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-W3-A824-06 12 107391315 107391315 G A CRY1 Silent p.I481I 0.29 TCGA-W3-A824-06 12 109294356 109294356 C T DAO 3'UTR 0.37 TCGA-W3-A824-06 12 109527853 109527853 C T ALKBH2 Missense_Mutation p.G147E 0.43 tolerated(1) benign(0.003) TCGA-W3-A824-06 12 111744791 111744791 G A CUX2 Missense_Mutation p.E309K 0.38 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 12 111746297 111746297 C T CUX2 Missense_Mutation p.L409F 0.44 deleterious(0.02) possibly_damaging(0.894) TCGA-W3-A824-06 12 111758210 111758210 C T CUX2 Silent p.P799P 0.33 TCGA-W3-A824-06 12 111785488 111785488 G A CUX2 Missense_Mutation p.E1274K 0.38 tolerated_low_confidence(0.15) benign(0.103) TCGA-W3-A824-06 12 113314660 113314660 C T RPH3A Missense_Mutation p.S387L 0.40 deleterious(0) possibly_damaging(0.579) TCGA-W3-A824-06 12 114352813 114352813 G A RBM19 Missense_Mutation p.P840L 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 12 114793374 114793374 C T TBX5 Missense_Mutation p.G507E 0.38 deleterious(0.02) benign(0.308) TCGA-W3-A824-06 12 117604807 117604807 G A FBXO21 Silent p.C363C 0.37 TCGA-W3-A824-06 12 120189987 120189987 G A CIT Silent p.S924S 0.33 TCGA-W3-A824-06 12 120574368 120574368 C T GCN1L1 Missense_Mutation p.D2316N 0.39 probably_damaging(0.998) TCGA-W3-A824-06 12 120574369 120574369 C T GCN1L1 Silent p.G2315G 0.40 TCGA-W3-A824-06 12 121434462 121434462 C T HNF1A Missense_Mutation p.P409L 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 121469402 121469402 G A OASL Missense_Mutation p.S167F 0.35 tolerated(0.51) benign(0.023) TCGA-W3-A824-06 12 122626249 122626249 A T MLXIP Missense_Mutation p.T884S 0.33 tolerated(0.83) benign(0.178) TCGA-W3-A824-06 12 123430651 123430651 T C ABCB9 Missense_Mutation p.Y391C 0.41 deleterious(0) probably_damaging(0.976) TCGA-W3-A824-06 12 123647561 123647561 C T MPHOSPH9 Missense_Mutation p.R858Q 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-W3-A824-06 12 124364251 124364251 C T DNAH10 Missense_Mutation p.P2728L 0.38 probably_damaging(0.997) TCGA-W3-A824-06 12 126137126 126137126 G A TMEM132B Missense_Mutation p.R680K 0.31 tolerated(0.32) probably_damaging(0.943) TCGA-W3-A824-06 12 12618623 12618623 C T LOH12CR1 Silent p.P168P 0.26 TCGA-W3-A824-06 12 129285499 129285499 G A SLC15A4 Silent p.T438T 0.32 TCGA-W3-A824-06 12 129285500 129285500 G A SLC15A4 Missense_Mutation p.T438I 0.33 tolerated(0.29) benign(0.038) TCGA-W3-A824-06 12 129569277 129569277 G A TMEM132D Intron 0.35 TCGA-W3-A824-06 12 12980249 12980249 G A DDX47 Silent p.Q392Q 0.38 TCGA-W3-A824-06 12 129822209 129822209 C T TMEM132D Silent p.K423K 0.44 TCGA-W3-A824-06 12 130941081 130941081 G A RIMBP2 Silent p.F89F 0.35 TCGA-W3-A824-06 12 13211451 13211451 C T KIAA1467 Missense_Mutation p.S167F 0.37 deleterious(0.01) probably_damaging(0.978) TCGA-W3-A824-06 12 132589583 132589583 T C EP400NL Silent p.L208L 0.25 TCGA-W3-A824-06 12 132685788 132685788 C T GALNT9 Missense_Mutation p.G62R 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 133324793 133324793 G A ANKLE2 Silent p.T324T 0.36 TCGA-W3-A824-06 12 133778923 133778923 T C ZNF268 Silent p.S217S 0.33 TCGA-W3-A824-06 12 133779349 133779349 C T ZNF268 Silent p.P359P 0.30 TCGA-W3-A824-06 12 14695152 14695152 C T PLBD1 Missense_Mutation p.D137N 0.38 tolerated(0.48) benign(0.006) TCGA-W3-A824-06 12 14774956 14774956 G A GUCY2C Missense_Mutation p.H862Y 0.39 deleterious(0.03) probably_damaging(0.953) TCGA-W3-A824-06 12 15710388 15710388 G A PTPRO Splice_Site p.X853_splice 0.36 TCGA-W3-A824-06 12 20893300 20893300 G A SLCO1C1 Silent p.L577L 0.33 TCGA-W3-A824-06 12 21036398 21036398 G A SLCO1B3 Missense_Mutation p.R515K 0.38 tolerated(0.88) benign(0.004) TCGA-W3-A824-06 12 21712093 21712093 G A GYS2 Missense_Mutation p.P414S 0.48 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 12 29689158 29689158 G A TMTC1 Missense_Mutation p.S590L 0.47 deleterious(0) probably_damaging(0.979) TCGA-W3-A824-06 12 40114658 40114658 G A C12orf40 Missense_Mutation p.E522K 0.29 deleterious(0.02) benign(0.187) TCGA-W3-A824-06 12 40619039 40619039 G A LRRK2 Missense_Mutation p.V36I 0.36 tolerated_low_confidence(0.72) benign(0.009) TCGA-W3-A824-06 12 40699701 40699701 C T LRRK2 Missense_Mutation p.P1298S 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 41302275 41302284 CTATTACTAC - CNTN1 Frame_Shift_Del p.I15Vfs*2 0.31 TCGA-W3-A824-06 12 42853660 42853660 T A PRICKLE1 Missense_Mutation p.K816I 0.39 deleterious(0.05) possibly_damaging(0.759) TCGA-W3-A824-06 12 43821146 43821146 G A ADAMTS20 Missense_Mutation p.P1358S 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-W3-A824-06 12 4479845 4479845 C T FGF23 Silent p.R140R 0.36 TCGA-W3-A824-06 12 46633626 46633626 C T SLC38A1 5'UTR 0.27 TCGA-W3-A824-06 12 48368595 48368595 C T COL2A1 Missense_Mutation p.V1313I 0.38 unknown(0) TCGA-W3-A824-06 12 4919309 4919309 C T KCNA6 Silent p.G34G 0.06 TCGA-W3-A824-06 12 49444815 49444815 G A KMT2D Missense_Mutation p.P884L 0.45 unknown(0) TCGA-W3-A824-06 12 49993971 49993971 G A FAM186B Silent p.F484F 0.30 TCGA-W3-A824-06 12 5021311 5021311 T G KCNA1 Missense_Mutation p.F256C 0.40 deleterious(0.01) possibly_damaging(0.726) TCGA-W3-A824-06 12 5021312 5021312 C T KCNA1 Silent p.F256F 0.41 TCGA-W3-A824-06 12 50367319 50367319 C T AQP6 Silent p.V121V 0.33 TCGA-W3-A824-06 12 51252618 51252618 G A TMPRSS12 Missense_Mutation p.R145H 0.29 tolerated(1) benign(0) TCGA-W3-A824-06 12 51773163 51773163 C T GALNT6 Missense_Mutation p.E135K 0.31 tolerated(0.24) benign(0.006) TCGA-W3-A824-06 12 52056819 52056819 C T SCN8A Missense_Mutation p.P73L 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 52448532 52448532 G A NR4A1 Silent p.S153S 0.39 TCGA-W3-A824-06 12 52818238 52818238 C A KRT75 3'UTR 0.45 TCGA-W3-A824-06 12 53207524 53207524 C T KRT4 Missense_Mutation p.G107R 0.40 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 12 55028623 55028623 C T LACRT Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) unknown(0) TCGA-W3-A824-06 12 55524235 55524235 C T OR9K2 Missense_Mutation p.S228L 0.28 tolerated(0.09) benign(0.014) TCGA-W3-A824-06 12 55641452 55641452 C T OR6C74 Silent p.P127P 0.39 TCGA-W3-A824-06 12 55794584 55794584 C T OR6C65 Missense_Mutation p.S91F 0.34 deleterious_low_confidence(0.01) benign(0.111) TCGA-W3-A824-06 12 55795008 55795008 G A OR6C65 Silent p.R232R 0.40 TCGA-W3-A824-06 12 56031008 56031008 G A OR10P1 Silent p.S111S 0.47 TCGA-W3-A824-06 12 56495443 56495443 C T ERBB3 Silent p.P1211P 0.42 TCGA-W3-A824-06 12 56848292 56848292 G A MIP Missense_Mutation p.P36S 0.32 tolerated(1) benign(0.081) TCGA-W3-A824-06 12 57351354 57351354 C T RDH16 5'UTR 0.55 TCGA-W3-A824-06 12 57485592 57485592 C T NAB2 Silent p.F256F 0.38 TCGA-W3-A824-06 12 57485593 57485593 C T NAB2 Missense_Mutation p.P257S 0.38 tolerated(0.08) probably_damaging(0.993) TCGA-W3-A824-06 12 6031956 6031956 G A ANO2 Missense_Mutation p.P9S 0.35 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-W3-A824-06 12 6103328 6103328 C T VWF Missense_Mutation p.D2100N 0.40 tolerated(0.44) probably_damaging(0.945) TCGA-W3-A824-06 12 62104179 62104179 C T FAM19A2 3'UTR 0.39 TCGA-W3-A824-06 12 64474105 64474105 A G SRGAP1 Missense_Mutation p.K455E 0.34 deleterious(0) benign(0.19) TCGA-W3-A824-06 12 6483574 6483574 C T SCNN1A Missense_Mutation p.V185I 0.42 tolerated(0.29) benign(0.047) TCGA-W3-A824-06 12 66786515 66786515 G A GRIP1 Silent p.I685I 0.40 TCGA-W3-A824-06 12 66909414 66909414 C T GRIP1 Missense_Mutation p.D237N 0.43 deleterious(0) probably_damaging(0.948) TCGA-W3-A824-06 12 66923638 66923638 C T GRIP1 Missense_Mutation p.G159S 0.38 deleterious(0.01) benign(0.202) TCGA-W3-A824-06 12 69264020 69264020 A G CPM Silent p.S197S 0.26 TCGA-W3-A824-06 12 7653847 7653847 C T CD163 Missense_Mutation p.M115I 0.37 tolerated(0.25) benign(0.088) TCGA-W3-A824-06 12 76786510 76786510 C A OSBPL8 Missense_Mutation p.L260F 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 12 88433926 88433926 C A C12orf29 Missense_Mutation p.P31Q 0.31 tolerated(0.45) possibly_damaging(0.746) TCGA-W3-A824-06 12 88472946 88472946 T A CEP290 Missense_Mutation p.I1763F 0.55 possibly_damaging(0.776) TCGA-W3-A824-06 12 9231857 9231857 C T A2M Silent p.R1034R 0.30 TCGA-W3-A824-06 12 9251213 9251213 G A A2M Missense_Mutation p.S614L 0.46 deleterious(0) possibly_damaging(0.627) TCGA-W3-A824-06 12 93173003 93173003 G A EEA1 Missense_Mutation p.S1181F 0.14 deleterious(0.01) benign(0.238) TCGA-W3-A824-06 12 93258758 93258758 G A EEA1 Silent p.F41F 0.33 TCGA-W3-A824-06 12 94975900 94975900 G A TMCC3 Missense_Mutation p.R165C 0.36 deleterious(0) benign(0.012) TCGA-W3-A824-06 12 9908915 9908915 G A CD69 Silent p.I55I 0.46 TCGA-W3-A824-06 13 100925561 100925561 G A PCCA Silent p.K342K 0.64 TCGA-W3-A824-06 13 101710319 101710319 C T NALCN Silent p.R1665R 0.29 TCGA-W3-A824-06 13 101720352 101720352 G A NALCN Missense_Mutation p.S1455F 0.31 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 13 101944602 101944602 G A NALCN Silent p.L305L 0.24 TCGA-W3-A824-06 13 107822868 107822868 C T FAM155A Missense_Mutation p.E452K 0.27 deleterious(0) benign(0.107) TCGA-W3-A824-06 13 109535478 109535478 G A MYO16 Silent p.V477V 0.29 TCGA-W3-A824-06 13 110826828 110826828 C T COL4A1 Missense_Mutation p.G1124E 0.31 probably_damaging(1) TCGA-W3-A824-06 13 110838762 110838762 G A COL4A1 Missense_Mutation p.P623S 0.51 possibly_damaging(0.559) TCGA-W3-A824-06 13 113465029 113465029 C T ATP11A Nonsense_Mutation p.R144* 0.28 TCGA-W3-A824-06 13 113527936 113527936 G - ATP11A Frame_Shift_Del p.S1038Rfs*15 0.15 TCGA-W3-A824-06 13 113832535 113832535 G A PCID2 Missense_Mutation p.P447S 0.58 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 13 23905436 23905436 G A SACS Silent p.I4193I 0.26 TCGA-W3-A824-06 13 23906788 23906788 G A SACS Missense_Mutation p.P3743S 0.30 probably_damaging(0.997) TCGA-W3-A824-06 13 23911590 23911590 G A SACS Missense_Mutation p.P2142L 0.30 possibly_damaging(0.546) TCGA-W3-A824-06 13 25264514 25264514 C T ATP12A Silent p.I195I 0.61 TCGA-W3-A824-06 13 25276192 25276192 G A ATP12A Silent p.V673V 0.22 TCGA-W3-A824-06 13 25284702 25284702 G A ATP12A Silent p.R962R 0.49 TCGA-W3-A824-06 13 25671880 25671880 C T PABPC3 Missense_Mutation p.P515L 0.25 deleterious(0.02) benign(0.306) TCGA-W3-A824-06 13 28141910 28141910 G A LNX2 Missense_Mutation p.P241L 0.20 deleterious(0.03) probably_damaging(1) TCGA-W3-A824-06 13 30062130 30062130 C T MTUS2 Missense_Mutation p.H1175Y 0.37 deleterious(0.04) probably_damaging(0.989) TCGA-W3-A824-06 13 31195922 31195922 C T USPL1 Missense_Mutation p.P41S 0.48 tolerated(0.46) benign(0.027) TCGA-W3-A824-06 13 31898018 31898018 C T B3GALTL Missense_Mutation p.P439S 0.23 deleterious(0.05) possibly_damaging(0.483) TCGA-W3-A824-06 13 31898019 31898019 C T B3GALTL Missense_Mutation p.P439L 0.23 deleterious(0) probably_damaging(0.939) TCGA-W3-A824-06 13 32800069 32800069 C T FRY Silent p.L1722L 0.39 TCGA-W3-A824-06 13 35738574 35738574 C T NBEA Silent p.S1387S 0.50 TCGA-W3-A824-06 13 36124714 36124714 T A NBEA Missense_Mutation p.V2229E 0.24 deleterious(0) probably_damaging(0.946) TCGA-W3-A824-06 13 36445371 36445371 G A DCLK1 Silent p.S310S 0.51 TCGA-W3-A824-06 13 36700097 36700097 G A DCLK1 Missense_Mutation p.R60C 0.52 deleterious(0.02) unknown(0) TCGA-W3-A824-06 13 41134072 41134072 G A FOXO1 Missense_Mutation p.P519L 0.30 tolerated(0.08) benign(0.36) TCGA-W3-A824-06 13 45980046 45980046 C T SLC25A30 Silent p.L93L 0.23 TCGA-W3-A824-06 13 46287803 46287803 C T SPERT Missense_Mutation p.P215S 0.31 tolerated(0.79) benign(0.006) TCGA-W3-A824-06 13 46287925 46287925 C T SPERT Silent p.R255R 0.25 TCGA-W3-A824-06 13 46923476 46923476 G A KIAA0226L Nonsense_Mutation p.Q526* 0.29 TCGA-W3-A824-06 13 70293681 70293681 G A KLHL1 Missense_Mutation p.S612F 0.24 deleterious(0.02) possibly_damaging(0.873) TCGA-W3-A824-06 13 73340168 73340168 G A DIS3 Nonsense_Mutation p.R638* 0.23 TCGA-W3-A824-06 13 77641842 77641842 A G MYCBP2 Missense_Mutation p.L4072P 0.28 probably_damaging(0.994) TCGA-W3-A824-06 13 77641843 77641843 G A MYCBP2 Silent p.L4072L 0.28 TCGA-W3-A824-06 13 86370529 86370529 C T SLITRK6 Missense_Mutation p.E39K 0.33 deleterious(0.02) benign(0.11) TCGA-W3-A824-06 13 92346037 92346037 G A GPC5 Missense_Mutation p.G308R 0.24 tolerated(0.11) probably_damaging(1) TCGA-W3-A824-06 13 92560272 92560272 G A GPC5 Silent p.V454V 0.25 TCGA-W3-A824-06 13 96238386 96238386 G A DZIP1 Silent p.V741V 0.26 TCGA-W3-A824-06 13 96546881 96546881 G A UGGT2 Silent p.A930A 0.26 TCGA-W3-A824-06 13 97639190 97639190 G A OXGR1 Missense_Mutation p.S275F 0.47 tolerated(0.5) benign(0.436) TCGA-W3-A824-06 14 100182177 100182177 G A CYP46A1 Missense_Mutation p.E242K 0.41 tolerated(0.12) benign(0.055) TCGA-W3-A824-06 14 101449268 101449268 C T SNORD114-22 RNA 0.39 TCGA-W3-A824-06 14 103371563 103371563 C T TRAF3 Silent p.S383S 0.29 TCGA-W3-A824-06 14 105061573 105061573 C T TMEM179 Missense_Mutation p.E151K 0.43 deleterious(0.02) benign(0.031) TCGA-W3-A824-06 14 105172481 105172481 C T INF2 Missense_Mutation p.H271Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 14 105180803 105180803 C T INF2 Missense_Mutation p.P1102S 0.36 tolerated_low_confidence(0.07) unknown(0) TCGA-W3-A824-06 14 105418732 105418732 G A AHNAK2 Missense_Mutation p.A1019V 0.38 benign(0.007) TCGA-W3-A824-06 14 105453043 105453043 G A C14orf79 Missense_Mutation p.G92E 0.43 tolerated(1) benign(0.003) TCGA-W3-A824-06 14 105849805 105849805 A G PACS2 Missense_Mutation p.T579A 0.33 tolerated(0.08) possibly_damaging(0.779) TCGA-W3-A824-06 14 106091440 106091440 C T IGHG4 Missense_Mutation p.E152K 0.38 tolerated(0.08) benign(0.008) TCGA-W3-A824-06 14 106173837 106173837 C T IGHA1 Missense_Mutation p.E244K 0.52 deleterious(0.05) probably_damaging(0.996) TCGA-W3-A824-06 14 107131200 107131200 C T IGHV3-66 Missense_Mutation p.G61R 0.31 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-W3-A824-06 14 107282977 107282977 C T IGHV7-81 Missense_Mutation p.V56M 0.36 deleterious(0.02) possibly_damaging(0.775) TCGA-W3-A824-06 14 19377600 19377600 C T OR11H12 Missense_Mutation p.P3S 0.40 tolerated_low_confidence(0.38) benign(0) TCGA-W3-A824-06 14 20345264 20345264 C T OR4K2 Missense_Mutation p.P280S 0.26 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 14 20585717 20585717 C T OR4K17 Missense_Mutation p.S51F 0.42 deleterious(0.02) benign(0.132) TCGA-W3-A824-06 14 20586293 20586293 T A OR4K17 Missense_Mutation p.I243N 0.39 deleterious(0) benign(0.275) TCGA-W3-A824-06 14 20692623 20692623 G A OR11H6 Missense_Mutation p.R252Q 0.34 tolerated(0.11) benign(0.046) TCGA-W3-A824-06 14 20692717 20692717 G A OR11H6 Silent p.G283G 0.32 TCGA-W3-A824-06 14 20978805 20978805 G A RNASE10 Missense_Mutation p.G59R 0.43 tolerated(0.13) benign(0.097) TCGA-W3-A824-06 14 20978806 20978806 G A RNASE10 Missense_Mutation p.G59E 0.42 deleterious(0.02) possibly_damaging(0.672) TCGA-W3-A824-06 14 22133614 22133614 C T OR4E2 Silent p.L106L 0.45 TCGA-W3-A824-06 14 22192041 22192041 C T TRAV3 5'UTR 0.42 TCGA-W3-A824-06 14 22521242 22521242 C T TRAV21 Missense_Mutation p.S88L 0.43 tolerated(0.08) benign(0.07) TCGA-W3-A824-06 14 23013052 23013052 G A TRAJ2 Silent p.G13G 0.37 TCGA-W3-A824-06 14 23245527 23245527 C T SLC7A7 Silent p.R257R 0.31 TCGA-W3-A824-06 14 24114506 24114506 G A DHRS2 Missense_Mutation p.A300T 0.38 deleterious_low_confidence(0) unknown(0) TCGA-W3-A824-06 14 24655117 24655117 G A IPO4 Silent p.L373L 0.30 TCGA-W3-A824-06 14 24658513 24658513 G A TM9SF1 3'UTR 0.38 TCGA-W3-A824-06 14 24791356 24791356 C T ADCY4 Missense_Mutation p.M834I 0.35 deleterious(0) probably_damaging(0.942) TCGA-W3-A824-06 14 24802136 24802136 G A ADCY4 Missense_Mutation p.S73L 0.33 tolerated(1) benign(0) TCGA-W3-A824-06 14 24846046 24846046 G A NFATC4 Missense_Mutation p.R931Q 0.31 tolerated_low_confidence(0.11) probably_damaging(0.947) TCGA-W3-A824-06 14 29237686 29237686 T A FOXG1 Missense_Mutation p.S401T 0.37 tolerated(0.12) benign(0.003) TCGA-W3-A824-06 14 34398357 34398357 G A EGLN3 Missense_Mutation p.P180L 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 14 36154146 36154146 C A RALGAPA1 Missense_Mutation p.R922L 0.28 tolerated(0.29) benign(0.13) TCGA-W3-A824-06 14 38679718 38679718 C T SSTR1 Missense_Mutation p.S375F 0.30 tolerated(0.08) benign(0.276) TCGA-W3-A824-06 14 39819363 39819363 C T CTAGE5 Silent p.F775F 0.42 TCGA-W3-A824-06 14 53066882 53066882 G A GPR137C Silent p.V180V 0.31 TCGA-W3-A824-06 14 58785286 58785286 T G ARID4A Missense_Mutation p.L101V 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 14 59821888 59821888 C T DAAM1 Missense_Mutation p.R798C 0.32 tolerated(0.17) possibly_damaging(0.682) TCGA-W3-A824-06 14 63473177 63473177 C T KCNH5 Missense_Mutation p.E71K 0.37 deleterious(0.03) benign(0.418) TCGA-W3-A824-06 14 64683004 64683004 G A SYNE2 Missense_Mutation p.D6481N 0.33 probably_damaging(0.995) TCGA-W3-A824-06 14 64892789 64892789 C T MTHFD1 Nonsense_Mutation p.R336* 0.35 TCGA-W3-A824-06 14 64989551 64989551 C A ZBTB1 Missense_Mutation p.H443Q 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-W3-A824-06 14 68265042 68265042 G T ZFYVE26 Missense_Mutation p.P646Q 0.35 tolerated(0.88) possibly_damaging(0.825) TCGA-W3-A824-06 14 70635115 70635115 G A SLC8A3 Missense_Mutation p.L9F 0.16 tolerated_low_confidence(0.61) benign(0.121) TCGA-W3-A824-06 14 71197508 71197508 G A MAP3K9 Silent p.F982F 0.21 TCGA-W3-A824-06 14 71199973 71199973 G A MAP3K9 Missense_Mutation p.R719C 0.40 deleterious(0) probably_damaging(0.949) TCGA-W3-A824-06 14 73967313 73967313 T G HEATR4 Missense_Mutation p.T743P 0.44 deleterious(0.01) possibly_damaging(0.447) TCGA-W3-A824-06 14 74766913 74766913 G A ABCD4 Missense_Mutation p.P33S 0.47 tolerated(0.07) possibly_damaging(0.764) TCGA-W3-A824-06 14 74874195 74874195 C T SYNDIG1L 3'UTR 0.38 TCGA-W3-A824-06 14 74874382 74874382 G A SYNDIG1L Silent p.I191I 0.37 TCGA-W3-A824-06 14 74967575 74967575 G A LTBP2 3'UTR 0.12 TCGA-W3-A824-06 14 76211495 76211495 C T TTLL5 Missense_Mutation p.R447W 0.19 deleterious(0) probably_damaging(0.929) TCGA-W3-A824-06 14 76248916 76248916 C T TTLL5 Nonsense_Mutation p.R868* 0.41 TCGA-W3-A824-06 14 77685294 77685294 C T TMEM63C Silent p.I46I 0.40 TCGA-W3-A824-06 14 77746225 77746225 G A POMT2 Missense_Mutation p.S611L 0.18 tolerated(1) benign(0) TCGA-W3-A824-06 14 89077236 89077236 T A ZC3H14 Missense_Mutation p.I719N 0.42 deleterious(0) probably_damaging(0.97) TCGA-W3-A824-06 14 89171838 89171838 G A EML5 Silent p.T640T 0.29 TCGA-W3-A824-06 14 92058270 92058270 G A CATSPERB Missense_Mutation p.S929L 0.30 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 14 92091298 92091298 C T CATSPERB Missense_Mutation p.G599E 0.38 tolerated(0.1) possibly_damaging(0.466) TCGA-W3-A824-06 14 94139766 94139766 C T UNC79 Missense_Mutation p.P2098S 0.40 tolerated(0.45) probably_damaging(0.999) TCGA-W3-A824-06 14 94394558 94394558 C T FAM181A Missense_Mutation p.P38L 0.32 tolerated_low_confidence(0.16) benign(0.002) TCGA-W3-A824-06 14 94933554 94933554 C T SERPINA9 Missense_Mutation p.G283E 0.40 tolerated(0.14) benign(0.125) TCGA-W3-A824-06 14 94933555 94933555 C T SERPINA9 Missense_Mutation p.G283R 0.41 tolerated(0.15) benign(0.125) TCGA-W3-A824-06 14 96756837 96756837 G A ATG2B Missense_Mutation p.S1931F 0.40 deleterious(0) probably_damaging(0.974) TCGA-W3-A824-06 15 101589934 101589934 G T LRRK1 Missense_Mutation p.A1129S 0.44 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 15 22382594 22382594 G A OR4N4 Missense_Mutation p.G41E 0.24 deleterious(0) probably_damaging(0.931) TCGA-W3-A824-06 15 24924398 24924398 G A NPAP1 Nonsense_Mutation p.W1128* 0.35 TCGA-W3-A824-06 15 25304728 25304728 C T SNORD116-3 3'Flank 0.30 TCGA-W3-A824-06 15 25442544 25442544 G A SNORD115-14 3'Flank 0.25 TCGA-W3-A824-06 15 25468430 25468430 G A SNORD115-29 RNA 0.32 TCGA-W3-A824-06 15 25616049 25616049 G A UBE3A Silent p.P427P 0.47 TCGA-W3-A824-06 15 26793161 26793161 G A GABRB3 Nonsense_Mutation p.Q401* 0.49 TCGA-W3-A824-06 15 29400563 29400563 C T APBA2 Nonsense_Mutation p.Q670* 0.36 TCGA-W3-A824-06 15 40675132 40675132 G A KNSTRN Silent p.R32R 0.44 TCGA-W3-A824-06 15 40914573 40914573 C T CASC5 Missense_Mutation p.S730L 0.46 tolerated(0.07) benign(0.006) TCGA-W3-A824-06 15 41223942 41223942 G A DLL4 Nonsense_Mutation p.W212* 0.38 TCGA-W3-A824-06 15 41230249 41230249 G A DLL4 3'UTR 0.75 TCGA-W3-A824-06 15 41483762 41483762 A G EXD1 Missense_Mutation p.S190P 0.42 deleterious(0.01) probably_damaging(0.974) TCGA-W3-A824-06 15 41749902 41749902 T C RTF1 Missense_Mutation p.S164P 0.35 tolerated(0.27) benign(0.255) TCGA-W3-A824-06 15 41795382 41795382 C G ITPKA 3'UTR 0.62 TCGA-W3-A824-06 15 43668301 43668301 G A TUBGCP4 Silent p.S28S 0.38 TCGA-W3-A824-06 15 43892181 43892181 C A STRC Missense_Mutation p.G1739V 0.53 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 15 43940191 43940191 G A CATSPER2 Silent p.I23I 0.35 TCGA-W3-A824-06 15 45059912 45059912 C T TRIM69 Missense_Mutation p.P482L 0.17 deleterious(0) probably_damaging(0.986) TCGA-W3-A824-06 15 45402723 45402723 C T DUOX2 Splice_Site p.X315_splice 0.31 TCGA-W3-A824-06 15 48789546 48789546 C T FBN1 Missense_Mutation p.G737E 0.36 probably_damaging(1) TCGA-W3-A824-06 15 50773707 50773707 A C USP8 Missense_Mutation p.K416N 0.38 tolerated(0.09) benign(0.086) TCGA-W3-A824-06 15 56736659 56736659 G A MNS1 Silent p.I223I 0.40 TCGA-W3-A824-06 15 58284905 58284905 C T ALDH1A2 Missense_Mutation p.E266K 0.43 tolerated(0.06) benign(0.024) TCGA-W3-A824-06 15 64967998 64967998 C T ZNF609 Missense_Mutation p.P982L 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-W3-A824-06 15 65345338 65345338 C T SLC51B Missense_Mutation p.P75S 0.36 tolerated(0.09) benign(0.22) TCGA-W3-A824-06 15 65623471 65623471 G A IGDCC3 Missense_Mutation p.A493V 0.06 tolerated(0.16) benign(0.196) TCGA-W3-A824-06 15 72189866 72189866 G A MYO9A Missense_Mutation p.L1660F 0.41 tolerated_low_confidence(0.72) benign(0.001) TCGA-W3-A824-06 15 73045214 73045214 G A ADPGK Missense_Mutation p.S320F 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 15 73635795 73635795 C T HCN4 Silent p.T380T 0.10 TCGA-W3-A824-06 15 74426145 74426145 G A ISLR2 Silent p.A350A 0.42 TCGA-W3-A824-06 15 74565190 74565190 G A CCDC33 Missense_Mutation p.M239I 0.38 tolerated(0.1) benign(0.216) TCGA-W3-A824-06 15 74588189 74588189 C T CCDC33 Missense_Mutation p.S397F 0.37 tolerated(0.14) probably_damaging(0.919) TCGA-W3-A824-06 15 77907100 77907100 G A LINGO1 Silent p.R383R 0.27 TCGA-W3-A824-06 15 78390824 78390824 C T SH2D7 Silent p.V177V 0.47 TCGA-W3-A824-06 15 78758732 78758732 C T IREB2 Missense_Mutation p.S177F 0.45 tolerated(0.05) benign(0.309) TCGA-W3-A824-06 15 79356856 79356856 C T RASGRF1 Missense_Mutation p.V97M 0.39 deleterious(0) probably_damaging(0.912) TCGA-W3-A824-06 15 83451549 83451549 T A FSD2 Nonsense_Mutation p.K322* 0.43 TCGA-W3-A824-06 15 85259336 85259336 G A SEC11A 5'UTR 0.28 TCGA-W3-A824-06 15 85400843 85400843 T C ALPK3 Silent p.D1160D 0.39 TCGA-W3-A824-06 15 86814904 86814904 G A AGBL1 Nonsense_Mutation p.W635* 0.40 TCGA-W3-A824-06 15 89400779 89400779 G A ACAN Missense_Mutation p.G1655R 0.30 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 15 89403670 89403670 G A ACAN Missense_Mutation p.D2316N 0.29 deleterious(0.02) probably_damaging(1) TCGA-W3-A824-06 16 10989249 10989249 G A CIITA Missense_Mutation p.D55N 0.33 deleterious(0.03) possibly_damaging(0.517) TCGA-W3-A824-06 16 1143901 1143901 G A C1QTNF8 Missense_Mutation p.S120F 0.56 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 16 1552066 1552066 C T TELO2 Silent p.P497P 0.46 TCGA-W3-A824-06 16 15844010 15844010 G A MYH11 Silent p.P688P 0.39 TCGA-W3-A824-06 16 16259592 16259592 G A ABCC6 Missense_Mutation p.S1065F 0.30 tolerated(0.08) benign(0.063) TCGA-W3-A824-06 16 1797118 1797118 C T MAPK8IP3 Missense_Mutation p.S278F 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-W3-A824-06 16 18849550 18849550 A G SMG1 Missense_Mutation p.L2400S 0.25 deleterious(0) possibly_damaging(0.697) TCGA-W3-A824-06 16 19584540 19584540 A G C16orf62 Missense_Mutation p.T218A 0.18 deleterious(0) possibly_damaging(0.789) TCGA-W3-A824-06 16 20559385 20559385 G A ACSM2B Missense_Mutation p.T366M 0.04 deleterious(0.02) possibly_damaging(0.733) TCGA-W3-A824-06 16 20827444 20827444 C T AC004381.6 Missense_Mutation p.R129C 0.28 tolerated(0.08) benign(0.006) TCGA-W3-A824-06 16 20975210 20975210 G A DNAH3 Silent p.S3332S 0.36 TCGA-W3-A824-06 16 22128102 22128102 C T VWA3A Silent p.L280L 0.36 TCGA-W3-A824-06 16 2326729 2326729 C T ABCA3 Silent p.Q1687Q 0.43 TCGA-W3-A824-06 16 2333296 2333296 G A ABCA3 Missense_Mutation p.S1309F 0.36 deleterious(0) benign(0.017) TCGA-W3-A824-06 16 23647530 23647530 G A PALB2 Missense_Mutation p.P113S 0.34 tolerated(0.42) benign(0.023) TCGA-W3-A824-06 16 23647531 23647531 G C PALB2 Silent p.G112G 0.35 TCGA-W3-A824-06 16 24225994 24225994 G A PRKCB Missense_Mutation p.E627K 0.31 tolerated(0.17) benign(0.103) TCGA-W3-A824-06 16 24226094 24226094 C T PRKCB Missense_Mutation p.S660F 0.27 deleterious(0) probably_damaging(0.968) TCGA-W3-A824-06 16 24226118 24226118 A T PRKCB Missense_Mutation p.K668I 0.24 tolerated_low_confidence(0.12) benign(0.01) TCGA-W3-A824-06 16 24231299 24231299 C T PRKCB 3'UTR 0.45 TCGA-W3-A824-06 16 27500436 27500436 G A GTF3C1 Silent p.L1119L 0.32 TCGA-W3-A824-06 16 27504018 27504018 C T GTF3C1 Missense_Mutation p.V965M 0.44 deleterious(0.02) probably_damaging(0.981) TCGA-W3-A824-06 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.29 TCGA-W3-A824-06 16 28607226 28607226 C T SULT1A2 Missense_Mutation p.R9H 0.32 deleterious(0.01) benign(0.018) TCGA-W3-A824-06 16 30721335 30721335 C T SRCAP Silent p.P340P 0.59 TCGA-W3-A824-06 16 30965038 30965038 C A ORAI3 Missense_Mutation p.P254H 0.37 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 16 30965039 30965039 C T ORAI3 Silent p.P254P 0.36 TCGA-W3-A824-06 16 30976141 30976141 C T SETD1A Missense_Mutation p.R360C 0.42 possibly_damaging(0.876) TCGA-W3-A824-06 16 31089176 31089176 G A ZNF646 Missense_Mutation p.V511M 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-W3-A824-06 16 31371733 31371733 G A ITGAX Silent p.K270K 0.41 TCGA-W3-A824-06 16 31437461 31437461 C T ITGAD 3'UTR 0.24 TCGA-W3-A824-06 16 31504908 31504908 C T C16orf58 Intron 0.36 TCGA-W3-A824-06 16 3169554 3169554 C T ZNF205 Missense_Mutation p.A298V 0.44 tolerated(0.4) benign(0.006) TCGA-W3-A824-06 16 3434770 3434770 G T ZSCAN32 Missense_Mutation p.T96N 0.34 tolerated(0.08) probably_damaging(0.924) TCGA-W3-A824-06 16 3705914 3705914 G T DNASE1 Missense_Mutation p.G71V 0.33 tolerated(0.14) possibly_damaging(0.647) TCGA-W3-A824-06 16 48265839 48265839 T C ABCC11 5'UTR 0.33 TCGA-W3-A824-06 16 49671565 49671565 G A ZNF423 Missense_Mutation p.R500C 0.41 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 16 50821748 50821748 C T CYLD Missense_Mutation p.P698L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 16 5110415 5110415 G T C16orf89 Silent p.P127P 0.38 TCGA-W3-A824-06 16 51174110 51174110 G A SALL1 Missense_Mutation p.P675S 0.32 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 16 56535409 56535409 C T BBS2 Missense_Mutation p.A361T 0.31 tolerated(0.29) benign(0.008) TCGA-W3-A824-06 16 57017585 57017585 C T CETP 3'UTR 0.44 TCGA-W3-A824-06 16 57071176 57071176 C T NLRC5 Silent p.T927T 0.24 TCGA-W3-A824-06 16 57071177 57071177 C T NLRC5 Silent p.L928L 0.24 TCGA-W3-A824-06 16 57953078 57953078 C T CNGB1 Missense_Mutation p.D628N 0.38 tolerated(0.16) benign(0.002) TCGA-W3-A824-06 16 65032588 65032588 C T CDH11 Missense_Mutation p.D134N 0.36 tolerated(0.62) benign(0.003) TCGA-W3-A824-06 16 67432720 67432720 G A ZDHHC1 Intron 0.47 TCGA-W3-A824-06 16 70605054 70605054 C A SF3B3 Silent p.L1155L 0.50 TCGA-W3-A824-06 16 706832 706832 C T WDR90 Missense_Mutation p.S768F 0.28 deleterious(0.05) possibly_damaging(0.857) TCGA-W3-A824-06 16 706833 706833 C T WDR90 Silent p.S768S 0.28 TCGA-W3-A824-06 16 70867860 70867860 C T HYDIN Missense_Mutation p.G4537R 0.42 probably_damaging(0.991) TCGA-W3-A824-06 16 71015376 71015376 G A HYDIN Silent p.A1476A 0.37 TCGA-W3-A824-06 16 71319136 71319136 G A CMTR2 Missense_Mutation p.H230Y 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-W3-A824-06 16 716532 716532 C T WDR90 Silent p.S1606S 0.36 TCGA-W3-A824-06 16 71674976 71674976 A G MARVELD3 3'UTR 0.32 TCGA-W3-A824-06 16 76389285 76389285 G A CNTNAP4 Missense_Mutation p.M64I 0.36 tolerated(0.12) benign(0.063) TCGA-W3-A824-06 16 77401416 77401416 G A ADAMTS18 Missense_Mutation p.H234Y 0.30 tolerated(0.13) benign(0.002) TCGA-W3-A824-06 16 815752 815752 G A MSLN Missense_Mutation p.R286Q 0.31 tolerated(0.65) benign(0.001) TCGA-W3-A824-06 16 82124630 82124630 G A HSD17B2 Missense_Mutation p.G263E 0.34 deleterious(0) probably_damaging(0.964) TCGA-W3-A824-06 16 84529454 84529454 G A TLDC1 Silent p.V73V 0.27 TCGA-W3-A824-06 16 87678214 87678214 C T JPH3 Missense_Mutation p.R245C 0.28 tolerated(0.22) benign(0.063) TCGA-W3-A824-06 16 8866744 8866744 C T ABAT Silent p.F308F 0.40 TCGA-W3-A824-06 16 8870212 8870212 C T ABAT Silent p.I378I 0.39 TCGA-W3-A824-06 16 8875165 8875165 G A ABAT Splice_Site p.X461_splice 0.45 TCGA-W3-A824-06 16 88766109 88766109 G A RNF166 Missense_Mutation p.S115L 0.33 deleterious(0) benign(0.023) TCGA-W3-A824-06 16 88778781 88778781 C T CTU2 Missense_Mutation p.A148V 0.29 tolerated(0.49) benign(0.266) TCGA-W3-A824-06 16 88779847 88779847 T A CTU2 Missense_Mutation p.W289R 0.37 tolerated(0.23) possibly_damaging(0.593) TCGA-W3-A824-06 16 88870988 88870988 C T CDT1 Silent p.I88I 0.18 TCGA-W3-A824-06 16 9000386 9000386 G A USP7 Missense_Mutation p.P442L 0.27 tolerated(0.12) benign(0.057) TCGA-W3-A824-06 16 90124762 90124762 G A PRDM7 Silent p.L472L 0.42 TCGA-W3-A824-06 16 90161040 90161040 C T TUBB8P7 Intron 0.13 TCGA-W3-A824-06 16 9857424 9857424 C T GRIN2A Missense_Mutation p.G1326D 0.39 deleterious(0) possibly_damaging(0.832) TCGA-W3-A824-06 17 10216512 10216512 C T MYH13 Missense_Mutation p.D1382N 0.36 deleterious(0.02) benign(0.011) TCGA-W3-A824-06 17 10222403 10222403 C T MYH13 Missense_Mutation p.E1148K 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-W3-A824-06 17 10222404 10222404 C T MYH13 Silent p.L1147L 0.40 TCGA-W3-A824-06 17 10261127 10261127 C T MYH13 Silent p.Q221Q 0.34 TCGA-W3-A824-06 17 10298740 10298740 C T MYH8 Missense_Mutation p.E1558K 0.38 deleterious(0.02) possibly_damaging(0.664) TCGA-W3-A824-06 17 10323348 10323348 G A MYH8 Missense_Mutation p.T66I 0.38 deleterious(0.02) benign(0.266) TCGA-W3-A824-06 17 10351729 10351729 G A MYH4 Missense_Mutation p.S1547F 0.35 deleterious(0) benign(0.347) TCGA-W3-A824-06 17 10398275 10398275 C T MYH1 Silent p.K1813K 0.34 TCGA-W3-A824-06 17 10538739 10538739 T G MYH3 Silent p.R1373R 0.32 TCGA-W3-A824-06 17 10542632 10542632 C T MYH3 Missense_Mutation p.E1029K 0.45 deleterious(0.01) probably_damaging(0.956) TCGA-W3-A824-06 17 12656596 12656596 C T MYOCD Missense_Mutation p.S664F 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-W3-A824-06 17 12666889 12666889 C T MYOCD Silent p.F963F 0.44 TCGA-W3-A824-06 17 12666919 12666919 C T MYOCD Silent p.L973L 0.42 TCGA-W3-A824-06 17 12888209 12888209 G A ARHGAP44 Silent p.G767G 0.36 TCGA-W3-A824-06 17 14248528 14248528 C T HS3ST3B1 Silent p.P246P 0.57 TCGA-W3-A824-06 17 1538829 1538829 C T SCARF1 Silent p.T572T 0.41 TCGA-W3-A824-06 17 1657424 1657424 G A SERPINF2 Missense_Mutation p.E358K 0.37 deleterious(0.04) benign(0.087) TCGA-W3-A824-06 17 16667379 16667379 C T CCDC144A Silent p.L1330L 0.21 TCGA-W3-A824-06 17 16699431 16699431 C T CCDC144A 3'UTR 0.13 TCGA-W3-A824-06 17 16699432 16699432 C T CCDC144A 3'UTR 0.13 TCGA-W3-A824-06 17 1704063 1704063 G A SMYD4 Missense_Mutation p.P209S 0.32 tolerated(0.21) benign(0.057) TCGA-W3-A824-06 17 17696329 17696329 G A RAI1 Missense_Mutation p.E23K 0.30 deleterious(0.01) possibly_damaging(0.601) TCGA-W3-A824-06 17 17696624 17696624 G - RAI1 Frame_Shift_Del p.A123Pfs*23 0.35 TCGA-W3-A824-06 17 18217991 18217991 C T TOP3A Silent p.R34R 0.68 TCGA-W3-A824-06 17 18923170 18923170 G A SLC5A10 Missense_Mutation p.A535T 0.26 deleterious(0.01) benign(0.063) TCGA-W3-A824-06 17 19618492 19618492 C T SLC47A2 Silent p.V54V 0.31 TCGA-W3-A824-06 17 19646650 19646650 C T ALDH3A1 Missense_Mutation p.E97K 0.34 tolerated(0.17) benign(0.405) TCGA-W3-A824-06 17 21204239 21204239 G A MAP2K3 Silent p.L111L 0.25 TCGA-W3-A824-06 17 21204240 21204240 G A MAP2K3 Missense_Mutation p.D112N 0.26 tolerated(0.07) benign(0.381) TCGA-W3-A824-06 17 21319109 21319109 C T KCNJ12 Missense_Mutation p.T152M 0.17 deleterious(0.03) probably_damaging(0.968) TCGA-W3-A824-06 17 21730808 21730808 C T UBBP4 Missense_Mutation p.P37L 0.44 tolerated(0.05) probably_damaging(0.98) TCGA-W3-A824-06 17 21730809 21730809 C T UBBP4 Silent p.P37P 0.45 TCGA-W3-A824-06 17 2593946 2593946 C T CLUH Missense_Mutation p.G1291E 0.48 tolerated_low_confidence(1) benign(0) TCGA-W3-A824-06 17 2966809 2966809 G A OR1D5 Silent p.F31F 0.46 TCGA-W3-A824-06 17 2996030 2996030 G A OR1D2 Silent p.S87S 0.35 TCGA-W3-A824-06 17 2996169 2996169 C T OR1D2 Missense_Mutation p.G41E 0.42 deleterious(0.01) benign(0.125) TCGA-W3-A824-06 17 31261321 31261321 C T TMEM98 Silent p.S92S 0.45 TCGA-W3-A824-06 17 33849744 33849744 T C SLFN12L 5'UTR 0.39 TCGA-W3-A824-06 17 34073294 34073294 G A GAS2L2 Missense_Mutation p.P408S 0.46 tolerated(0.48) benign(0.017) TCGA-W3-A824-06 17 35937521 35937521 C T SYNRG Silent p.E260E 0.31 TCGA-W3-A824-06 17 35937567 35937567 T C SYNRG Missense_Mutation p.N245S 0.45 tolerated(0.37) benign(0.003) TCGA-W3-A824-06 17 35980991 35980991 G A DDX52 Nonsense_Mutation p.R502* 0.34 TCGA-W3-A824-06 17 3651249 3651249 C T ITGAE Missense_Mutation p.E708K 0.32 deleterious(0.05) benign(0.284) TCGA-W3-A824-06 17 37650845 37650845 C T CDK12 Missense_Mutation p.R773C 0.42 probably_damaging(0.999) TCGA-W3-A824-06 17 37809991 37809991 C T STARD3 Silent p.I69I 0.42 TCGA-W3-A824-06 17 37817235 37817235 G A STARD3 Missense_Mutation p.D346N 0.34 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 17 38430155 38430155 C T WIPF2 Missense_Mutation p.P362S 0.49 tolerated(0.28) probably_damaging(0.996) TCGA-W3-A824-06 17 3844286 3844286 G A ATP2A3 Silent p.S693S 0.32 TCGA-W3-A824-06 17 39538581 39538581 C T KRT34 Missense_Mutation p.G15E 0.25 tolerated_low_confidence(0.23) benign(0.075) TCGA-W3-A824-06 17 39596790 39596790 C T KRT38 Silent p.E128E 0.42 TCGA-W3-A824-06 17 39728108 39728108 C T KRT9 Missense_Mutation p.R46Q 0.45 tolerated_low_confidence(0.05) unknown(0) TCGA-W3-A824-06 17 39994334 39994334 C T KLHL10 Silent p.F50F 0.41 TCGA-W3-A824-06 17 40557304 40557304 G A PTRF Missense_Mutation p.P192S 0.45 tolerated(0.66) benign(0.093) TCGA-W3-A824-06 17 41061382 41061382 G A G6PC Missense_Mutation p.R170Q 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 17 41891656 41891656 G A MPP3 Silent p.S361S 0.38 TCGA-W3-A824-06 17 41926251 41926251 C T CD300LG Silent p.F123F 0.34 TCGA-W3-A824-06 17 42398518 42398518 C T SLC25A39 Missense_Mutation p.G200D 0.52 tolerated(0.2) benign(0.035) TCGA-W3-A824-06 17 42855602 42855602 G A ADAM11 Nonsense_Mutation p.W756* 0.52 TCGA-W3-A824-06 17 43192783 43192783 C T PLCD3 Silent p.S496S 0.31 TCGA-W3-A824-06 17 43922486 43922486 G A SPPL2C Missense_Mutation p.G72S 0.36 tolerated(0.56) benign(0.3) TCGA-W3-A824-06 17 44055765 44055765 C - MAPT Frame_Shift_Del p.S113Afs*10 0.28 TCGA-W3-A824-06 17 44073932 44073932 C T MAPT Missense_Mutation p.R577C 0.36 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 17 46214599 46214599 C T SKAP1 Silent p.%3D 0.36 TCGA-W3-A824-06 17 47295136 47295136 G A ABI3 Silent p.R107R 0.29 TCGA-W3-A824-06 17 47656372 47656372 T C NXPH3 Missense_Mutation p.F157L 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-W3-A824-06 17 4806338 4806338 C T CHRNE Silent p.G7G 0.24 TCGA-W3-A824-06 17 48356678 48356678 C T TMEM92 3'UTR 0.34 TCGA-W3-A824-06 17 48450541 48450541 C T MRPL27 5'UTR 0.18 TCGA-W3-A824-06 17 48677042 48677042 C T CACNA1G Missense_Mutation p.S1171F 0.39 deleterious(0.02) possibly_damaging(0.809) TCGA-W3-A824-06 17 49284310 49284310 G A MBTD1 Silent p.P181P 0.43 TCGA-W3-A824-06 17 49343604 49343604 C T UTP18 Missense_Mutation p.L173F 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-W3-A824-06 17 5076100 5076100 G A USP6 Missense_Mutation p.E1350K 0.38 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-W3-A824-06 17 5086129 5086129 G A ZNF594 Missense_Mutation p.L475F 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-W3-A824-06 17 5086130 5086130 G A ZNF594 Silent p.H474H 0.36 TCGA-W3-A824-06 17 51900416 51900416 C T KIF2B Missense_Mutation p.P8S 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.782) TCGA-W3-A824-06 17 51901704 51901704 G A KIF2B Missense_Mutation p.R437Q 0.54 tolerated(0.08) benign(0.006) TCGA-W3-A824-06 17 56247109 56247109 C T OR4D2 Silent p.F31F 0.57 TCGA-W3-A824-06 17 56324930 56324930 C T LPO Missense_Mutation p.R86C 0.24 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 17 57292237 57292237 C T SMG8 Silent p.G950G 0.23 TCGA-W3-A824-06 17 60678083 60678083 C T TLK2 Missense_Mutation p.S541L 0.30 deleterious(0.04) benign(0.033) TCGA-W3-A824-06 17 60768025 60768025 C T MRC2 Silent p.I1305I 0.33 TCGA-W3-A824-06 17 61559938 61559938 G A ACE Silent p.R410R 0.22 TCGA-W3-A824-06 17 62080997 62080997 C T ICAM2 Intron 0.17 TCGA-W3-A824-06 17 62893388 62893388 G A LRRC37A3 5'UTR 0.13 TCGA-W3-A824-06 17 63221406 63221406 G A RGS9 Nonsense_Mutation p.W565* 0.20 TCGA-W3-A824-06 17 63898341 63898341 C T CEP112 Missense_Mutation p.E698K 0.21 tolerated(0.12) benign(0.423) TCGA-W3-A824-06 17 64783046 64783046 C T PRKCA Missense_Mutation p.S556F 0.24 tolerated(0.57) benign(0.054) TCGA-W3-A824-06 17 6606327 6606327 C T SLC13A5 Silent p.G226G 0.46 TCGA-W3-A824-06 17 66526554 66526554 C T PRKAR1A Silent p.I370I 0.33 TCGA-W3-A824-06 17 6683334 6683334 G A FBXO39 Missense_Mutation p.M49I 0.49 tolerated(0.51) benign(0.002) TCGA-W3-A824-06 17 67133520 67133520 G A ABCA6 Missense_Mutation p.S73F 0.25 deleterious(0) probably_damaging(0.975) TCGA-W3-A824-06 17 7132920 7132920 G A DVL2 Missense_Mutation p.P245L 0.31 tolerated(0.23) possibly_damaging(0.778) TCGA-W3-A824-06 17 71364704 71364704 T A SDK2 Missense_Mutation p.N1670I 0.58 deleterious(0) probably_damaging(0.952) TCGA-W3-A824-06 17 71431622 71431622 C T SDK2 Missense_Mutation p.E388K 0.57 deleterious(0) possibly_damaging(0.662) TCGA-W3-A824-06 17 72469840 72469840 G A CD300A Missense_Mutation p.G69E 0.58 tolerated(1) benign(0.008) TCGA-W3-A824-06 17 72926589 72926589 G A OTOP2 Missense_Mutation p.E287K 0.57 tolerated(0.82) benign(0.077) TCGA-W3-A824-06 17 7329942 7329942 G A C17orf74 Missense_Mutation p.G211D 0.35 tolerated(0.17) probably_damaging(0.982) TCGA-W3-A824-06 17 73502436 73502436 G A CASKIN2 Missense_Mutation p.H226Y 0.51 deleterious(0) probably_damaging(0.988) TCGA-W3-A824-06 17 73830542 73830542 C T UNC13D Nonsense_Mutation p.W721* 0.54 TCGA-W3-A824-06 17 74007862 74007862 G A EVPL Silent p.I853I 0.24 TCGA-W3-A824-06 17 74017977 74017977 C T EVPL Missense_Mutation p.D260N 0.56 tolerated(0.11) possibly_damaging(0.856) TCGA-W3-A824-06 17 74075432 74075432 G A ZACN Silent p.G29G 0.25 TCGA-W3-A824-06 17 7484875 7484875 G - CD68 3'UTR 0.33 TCGA-W3-A824-06 17 74902251 74902251 C T MGAT5B Missense_Mutation p.S347F 0.47 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 17 7750762 7750762 C T KDM6B Missense_Mutation p.P417S 0.33 unknown(0) TCGA-W3-A824-06 17 77768962 77768962 G A CBX8 Silent p.P214P 0.42 TCGA-W3-A824-06 17 7909841 7909841 G A GUCY2D Missense_Mutation p.G396E 0.36 tolerated(0.13) benign(0.199) TCGA-W3-A824-06 17 79994181 79994181 G A DCXR Nonsense_Mutation p.R173* 0.43 TCGA-W3-A824-06 17 80319917 80319917 C T TEX19 5'UTR 0.14 TCGA-W3-A824-06 17 80963058 80963058 G A B3GNTL1 Missense_Mutation p.P146L 0.59 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 17 8172349 8172349 G A PFAS Missense_Mutation p.D1262N 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-W3-A824-06 17 9490151 9490151 G A WDR16 Missense_Mutation p.S136N 0.30 tolerated(0.08) probably_damaging(0.94) TCGA-W3-A824-06 17 973304 973304 G A ABR Silent p.F307F 0.56 TCGA-W3-A824-06 18 14542804 14542804 C T POTEC Silent p.K114K 0.28 TCGA-W3-A824-06 18 19153510 19153510 G A ESCO1 Missense_Mutation p.P432L 0.37 tolerated(0.08) benign(0.02) TCGA-W3-A824-06 18 19997207 19997207 C T CTAGE1 Missense_Mutation p.E190K 0.32 deleterious(0.03) benign(0.16) TCGA-W3-A824-06 18 203129 203129 C T USP14 Missense_Mutation p.T325I 0.39 deleterious(0.02) possibly_damaging(0.469) TCGA-W3-A824-06 18 24496378 24496378 G A CHST9 Missense_Mutation p.P393S 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 18 2577838 2577838 C T NDC80 Silent p.F91F 0.40 TCGA-W3-A824-06 18 28598204 28598204 C T DSC3 Missense_Mutation p.E366K 0.30 deleterious(0.02) possibly_damaging(0.884) TCGA-W3-A824-06 18 28722082 28722082 C T DSC1 Silent p.Q380Q 0.44 TCGA-W3-A824-06 18 28742610 28742610 G A DSC1 5'UTR 0.39 TCGA-W3-A824-06 18 29039109 29039109 C T DSG3 Silent p.F162F 0.40 TCGA-W3-A824-06 18 29116337 29116337 C T DSG2 Silent p.S532S 0.44 TCGA-W3-A824-06 18 2945843 2945843 G A LPIN2 Intron 0.40 TCGA-W3-A824-06 18 29793254 29793254 C T MEP1B Silent p.F437F 0.43 TCGA-W3-A824-06 18 30092767 30092767 G A WBP11P1 RNA 0.34 TCGA-W3-A824-06 18 30825219 30825219 C T CCDC178 Missense_Mutation p.R528K 0.20 deleterious(0.03) probably_damaging(0.993) TCGA-W3-A824-06 18 30847017 30847017 C T CCDC178 Splice_Site p.X425_splice 0.36 TCGA-W3-A824-06 18 30950087 30950087 G A CCDC178 Missense_Mutation p.P92L 0.40 deleterious(0.02) possibly_damaging(0.589) TCGA-W3-A824-06 18 31323100 31323100 G A ASXL3 Silent p.T1096T 0.27 TCGA-W3-A824-06 18 3534426 3534426 G A DLGAP1 Missense_Mutation p.H749Y 0.37 deleterious(0.03) probably_damaging(0.974) TCGA-W3-A824-06 18 43316490 43316490 C T SLC14A1 Silent p.F236F 0.44 TCGA-W3-A824-06 18 44559598 44559598 C T TCEB3B Missense_Mutation p.G680R 0.40 deleterious(0.03) benign(0.231) TCGA-W3-A824-06 18 44560138 44560138 C T TCEB3B Missense_Mutation p.E500K 0.32 tolerated(0.07) probably_damaging(0.95) TCGA-W3-A824-06 18 56807234 56807234 C T SEC11C Silent p.I18I 0.45 TCGA-W3-A824-06 18 57147470 57147470 C T CCBE1 Silent p.R71R 0.30 TCGA-W3-A824-06 18 580970 580970 C T CETN1 3'UTR 0.32 TCGA-W3-A824-06 18 60241464 60241464 C T ZCCHC2 Missense_Mutation p.S717F 0.30 deleterious(0.01) possibly_damaging(0.701) TCGA-W3-A824-06 18 61308156 61308156 C T SERPINB4 Missense_Mutation p.E141K 0.38 deleterious(0.01) possibly_damaging(0.556) TCGA-W3-A824-06 18 67365650 67365650 C T DOK6 Silent p.N140N 0.08 TCGA-W3-A824-06 18 67816181 67816181 G A RTTN Silent p.T755T 0.36 TCGA-W3-A824-06 18 74091161 74091161 G A ZNF516 Missense_Mutation p.A970V 0.06 tolerated(0.16) benign(0.194) TCGA-W3-A824-06 18 77227588 77227588 G A NFATC1 Intron 0.39 TCGA-W3-A824-06 18 77918280 77918280 G A PARD6G Missense_Mutation p.P169S 0.50 deleterious(0) probably_damaging(0.981) TCGA-W3-A824-06 18 8798170 8798170 C T SOGA2 Missense_Mutation p.H773Y 0.33 tolerated(0.18) benign(0.095) TCGA-W3-A824-06 18 9886833 9886833 C T TXNDC2 Silent p.I119I 0.36 TCGA-W3-A824-06 18 9886834 9886834 C T TXNDC2 Missense_Mutation p.P120S 0.37 tolerated(0.36) benign(0.068) TCGA-W3-A824-06 18 9887223 9887223 C T TXNDC2 Silent p.P249P 0.40 TCGA-W3-A824-06 19 10220836 10220836 G A PPAN Missense_Mutation p.G246S 0.46 tolerated(0.05) probably_damaging(1) TCGA-W3-A824-06 19 10260333 10260333 C T DNMT1 Silent p.R794R 0.47 TCGA-W3-A824-06 19 1031117 1031117 G A CNN2 Nonsense_Mutation p.W37* 0.38 TCGA-W3-A824-06 19 11465621 11465621 G A DKFZP761J1410 5'Flank 0.38 TCGA-W3-A824-06 19 11508183 11508183 C G RGL3 Missense_Mutation p.E619Q 0.43 deleterious(0.01) unknown(0) TCGA-W3-A824-06 19 11510772 11510772 T C RGL3 Silent p.R531R 0.40 TCGA-W3-A824-06 19 11943578 11943578 C T ZNF440 Silent p.S529S 0.27 TCGA-W3-A824-06 19 12491944 12491944 G A CTD-3105H18.14 3'UTR 0.30 TCGA-W3-A824-06 19 12865711 12865711 C T BEST2 Missense_Mutation p.R168C 0.38 tolerated(0.06) benign(0.302) TCGA-W3-A824-06 19 1360303 1360303 C T MUM1 Missense_Mutation p.S129F 0.39 deleterious(0) benign(0.178) TCGA-W3-A824-06 19 1360304 1360304 C T MUM1 Silent p.S129S 0.37 TCGA-W3-A824-06 19 1461056 1461056 G A APC2 Silent p.R514R 0.45 TCGA-W3-A824-06 19 14730161 14730161 A G EMR3 3'UTR 0.40 TCGA-W3-A824-06 19 14761908 14761908 C T EMR3 Missense_Mutation p.G229E 0.26 tolerated(0.14) benign(0.024) TCGA-W3-A824-06 19 15807806 15807806 A G CYP4F12 Missense_Mutation p.T496A 0.49 tolerated(0.54) benign(0.008) TCGA-W3-A824-06 19 15918078 15918078 G A OR10H1 Missense_Mutation p.S257F 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 19 16001167 16001167 T C CYP4F2 Missense_Mutation p.D201G 0.31 deleterious(0) possibly_damaging(0.823) TCGA-W3-A824-06 19 1619203 1619203 C T TCF3 Missense_Mutation p.A453T 0.39 tolerated(0.48) benign(0.003) TCGA-W3-A824-06 19 16496996 16496996 G A EPS15L1 Missense_Mutation p.S717F 0.31 deleterious(0.05) benign(0.419) TCGA-W3-A824-06 19 17169401 17169401 G A HAUS8 Silent p.L201L 0.34 TCGA-W3-A824-06 19 17476392 17476392 G A PLVAP Silent p.I294I 0.44 TCGA-W3-A824-06 19 17769049 17769049 G A UNC13A Missense_Mutation p.R197C 0.38 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-W3-A824-06 19 1811748 1811748 G A ATP8B3 5'UTR 0.47 TCGA-W3-A824-06 19 18186627 18186627 C T IL12RB1 Missense_Mutation p.R211Q 0.44 tolerated(0.06) possibly_damaging(0.764) TCGA-W3-A824-06 19 18258261 18258261 C T MAST3 Missense_Mutation p.S1074L 0.30 deleterious(0) benign(0.231) TCGA-W3-A824-06 19 18966003 18966003 C T UPF1 Missense_Mutation p.T499M 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 19 19764833 19764833 G A ATP13A1 Missense_Mutation p.T645I 0.29 tolerated(0.18) benign(0.038) TCGA-W3-A824-06 19 19790937 19790937 C T ZNF101 Missense_Mutation p.S380F 0.26 deleterious(0.05) possibly_damaging(0.601) TCGA-W3-A824-06 19 20728724 20728724 G A ZNF737 Silent p.F95F 0.40 TCGA-W3-A824-06 19 20844247 20844247 C T ZNF626 Intron 0.37 TCGA-W3-A824-06 19 21240816 21240816 C T ZNF430 Silent p.L568L 0.38 TCGA-W3-A824-06 19 21607510 21607510 A G ZNF493 Silent p.K683K 0.28 TCGA-W3-A824-06 19 21607807 21607807 A G ZNF493 3'UTR 0.08 TCGA-W3-A824-06 19 22155465 22155465 T A ZNF208 Missense_Mutation p.I791F 0.43 tolerated(0.14) benign(0.003) TCGA-W3-A824-06 19 22271825 22271825 C T ZNF257 Missense_Mutation p.H425Y 0.35 deleterious(0.02) probably_damaging(1) TCGA-W3-A824-06 19 22363015 22363015 C T ZNF676 Missense_Mutation p.E502K 0.38 tolerated(0.08) probably_damaging(0.995) TCGA-W3-A824-06 19 22575574 22575574 G A ZNF98 Nonsense_Mutation p.Q155* 0.23 TCGA-W3-A824-06 19 3179433 3179433 G A S1PR4 Missense_Mutation p.V215I 0.39 tolerated(1) benign(0.004) TCGA-W3-A824-06 19 34887538 34887538 C T GPI Silent p.P426P 0.17 TCGA-W3-A824-06 19 3533324 3533324 C T FZR1 Silent p.I425I 0.49 TCGA-W3-A824-06 19 35719283 35719283 G A FAM187B Missense_Mutation p.R101C 0.05 deleterious(0.04) possibly_damaging(0.687) TCGA-W3-A824-06 19 3586573 3586573 C T GIPC3 Silent p.I102I 0.32 TCGA-W3-A824-06 19 36003679 36003679 C T DMKN Missense_Mutation p.G147D 0.46 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 19 36003680 36003680 C T DMKN Missense_Mutation p.G147S 0.43 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 19 3623966 3623966 G A CACTIN Missense_Mutation p.P121L 0.22 tolerated_low_confidence(0.06) unknown(0) TCGA-W3-A824-06 19 37005669 37005669 G A ZNF260 Missense_Mutation p.H158Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 19 37697955 37697955 C T CTC-454I21.3 Missense_Mutation p.G8D 0.33 tolerated(0.4) benign(0.023) TCGA-W3-A824-06 19 38861260 38861260 G A CATSPERG Nonsense_Mutation p.W1103* 0.42 TCGA-W3-A824-06 19 3982304 3982304 A G EEF2 Missense_Mutation p.L244S 0.41 deleterious(0.01) benign(0.119) TCGA-W3-A824-06 19 39912884 39912884 G A PLEKHG2 Missense_Mutation p.E545K 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-A824-06 19 40368534 40368534 C T FCGBP Missense_Mutation p.E4272K 0.10 benign(0.292) TCGA-W3-A824-06 19 40430391 40430391 C T FCGBP Missense_Mutation p.E518K 0.48 probably_damaging(0.999) TCGA-W3-A824-06 19 4054206 4054206 C T ZBTB7A Missense_Mutation p.R342Q 0.35 tolerated(0.23) benign(0.011) TCGA-W3-A824-06 19 4054231 4054231 C T ZBTB7A Missense_Mutation p.A334T 0.25 tolerated(0.24) benign(0.002) TCGA-W3-A824-06 19 4054232 4054232 C T ZBTB7A Silent p.A333A 0.31 TCGA-W3-A824-06 19 40929311 40929311 A G SERTAD1 Missense_Mutation p.L48P 0.21 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 19 40996126 40996126 C T SPTBN4 Silent p.L156L 0.26 TCGA-W3-A824-06 19 41350588 41350588 C T CYP2A6 Silent p.L417L 0.36 TCGA-W3-A824-06 19 41594923 41594923 T A CYP2A13 Silent p.A90A 0.25 TCGA-W3-A824-06 19 41594924 41594924 C T CYP2A13 Silent p.L91L 0.24 TCGA-W3-A824-06 19 41932566 41932566 C T B3GNT8 Missense_Mutation p.G40S 0.30 tolerated(0.62) benign(0.02) TCGA-W3-A824-06 19 41932567 41932567 C T B3GNT8 Silent p.R39R 0.30 TCGA-W3-A824-06 19 41944318 41944318 G A ATP5SL Missense_Mutation p.S13F 0.32 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-W3-A824-06 19 42259569 42259569 C T CEACAM6 Missense_Mutation p.P8L 0.29 tolerated(0.21) benign(0.008) TCGA-W3-A824-06 19 42486189 42486189 C T ATP1A3 Missense_Mutation p.E368K 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-W3-A824-06 19 42585440 42585440 C T ZNF574 Silent p.I894I 0.42 TCGA-W3-A824-06 19 43237167 43237167 C T PSG3 Missense_Mutation p.E160K 0.37 deleterious(0.04) possibly_damaging(0.773) TCGA-W3-A824-06 19 43371254 43371254 G A PSG1 3'Flank 0.41 TCGA-W3-A824-06 19 43689150 43689150 G A PSG5 Silent p.L72L 0.33 TCGA-W3-A824-06 19 44222787 44222787 C T IRGC Missense_Mutation p.A26V 0.41 tolerated(0.14) probably_damaging(0.974) TCGA-W3-A824-06 19 44222788 44222788 C T IRGC Silent p.A26A 0.41 TCGA-W3-A824-06 19 44740777 44740777 C T ZNF227 Nonsense_Mutation p.R732* 0.38 TCGA-W3-A824-06 19 44947124 44947124 C T ZNF229 5'UTR 0.29 TCGA-W3-A824-06 19 4513485 4513485 C T PLIN4 Missense_Mutation p.A149T 0.30 tolerated(1) benign(0.015) TCGA-W3-A824-06 19 4513486 4513486 C T PLIN4 Silent p.K148K 0.29 TCGA-W3-A824-06 19 45575157 45575157 G A ZNF296 Missense_Mutation p.S377L 0.34 tolerated(0.2) benign(0.016) TCGA-W3-A824-06 19 45593831 45593831 C T GEMIN7 3'UTR 0.50 TCGA-W3-A824-06 19 45593832 45593832 C T GEMIN7 3'UTR 0.50 TCGA-W3-A824-06 19 45849950 45849950 C T KLC3 Missense_Mutation p.S136F 0.33 deleterious(0.01) benign(0.321) TCGA-W3-A824-06 19 45974248 45974248 G T FOSB Intron 0.42 TCGA-W3-A824-06 19 46206198 46206198 C A QPCTL Missense_Mutation p.P347H 0.28 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 19 46314000 46314000 T C RSPH6A Missense_Mutation p.E250G 0.25 tolerated(0.11) benign(0.062) TCGA-W3-A824-06 19 46314001 46314001 C T RSPH6A Missense_Mutation p.E250K 0.26 tolerated(0.23) possibly_damaging(0.472) TCGA-W3-A824-06 19 46314002 46314002 C T RSPH6A Nonsense_Mutation p.W249* 0.29 TCGA-W3-A824-06 19 46387410 46387410 G A IRF2BP1 Silent p.A541A 0.34 TCGA-W3-A824-06 19 46387411 46387411 G A IRF2BP1 Missense_Mutation p.A541V 0.33 tolerated(0.05) possibly_damaging(0.579) TCGA-W3-A824-06 19 46404735 46404735 C T MYPOP Silent p.Q99Q 0.30 TCGA-W3-A824-06 19 46543498 46543498 G A IGFL4 Nonsense_Mutation p.Q83* 0.39 TCGA-W3-A824-06 19 47354122 47354122 C T AP2S1 5'UTR 0.29 TCGA-W3-A824-06 19 48519182 48519182 C T ELSPBP1 Nonsense_Mutation p.R81* 0.35 TCGA-W3-A824-06 19 48608652 48608652 C T PLA2G4C Missense_Mutation p.V30M 0.28 deleterious(0) probably_damaging(0.987) TCGA-W3-A824-06 19 49055495 49055495 C T SULT2B1 5'UTR 0.45 TCGA-W3-A824-06 19 49167419 49167419 G A NTN5 Silent p.S317S 0.19 TCGA-W3-A824-06 19 49362834 49362834 G A PLEKHA4 Missense_Mutation p.P195L 0.37 deleterious(0.04) benign(0.04) TCGA-W3-A824-06 19 49842178 49842178 C T CD37 Silent p.S223S 0.12 TCGA-W3-A824-06 19 50059850 50059850 G A NOSIP Silent p.R227R 0.45 TCGA-W3-A824-06 19 50461951 50461951 C A SIGLEC11 Missense_Mutation p.A438S 0.23 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 19 50726572 50726572 C T MYH14 Missense_Mutation p.S220L 0.67 deleterious(0) possibly_damaging(0.794) TCGA-W3-A824-06 19 50823928 50823928 G A KCNC3 Missense_Mutation p.R698C 0.36 deleterious_low_confidence(0) benign(0.217) TCGA-W3-A824-06 19 50840847 50840847 C T NAPSB RNA 0.33 TCGA-W3-A824-06 19 50944210 50944210 G A MYBPC2 Missense_Mutation p.E216K 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-W3-A824-06 19 51517983 51517983 G A KLK10 3'UTR 0.31 TCGA-W3-A824-06 19 51649346 51649346 C T SIGLEC7 Missense_Mutation p.S332F 0.42 tolerated(0.07) probably_damaging(0.911) TCGA-W3-A824-06 19 51729087 51729087 C T CD33 Silent p.I149I 0.37 TCGA-W3-A824-06 19 52002936 52002936 C T SIGLEC12 Silent p.G281G 0.38 TCGA-W3-A824-06 19 52249181 52249181 C T FPR1 3'UTR 0.43 TCGA-W3-A824-06 19 52249802 52249802 G A FPR1 Missense_Mutation p.P149L 0.34 tolerated(0.43) benign(0.029) TCGA-W3-A824-06 19 52375738 52375738 G A ZNF577 3'UTR 0.33 TCGA-W3-A824-06 19 52394586 52394586 C T ZNF649 Missense_Mutation p.G268E 0.32 deleterious(0.04) benign(0.403) TCGA-W3-A824-06 19 53014979 53014979 C T ZNF578 Missense_Mutation p.H449Y 0.33 deleterious(0) probably_damaging(0.965) TCGA-W3-A824-06 19 53058358 53058378 GTGGTGAGAAACCTTACAAGT - ZNF808 In_Frame_Del p.G731_C737del 0.25 TCGA-W3-A824-06 19 53079145 53079145 C T ZNF701 Intron 0.36 TCGA-W3-A824-06 19 53343816 53343816 G A ZNF468 3'UTR 0.35 TCGA-W3-A824-06 19 53344879 53344879 G A ZNF468 Missense_Mutation p.S223F 0.49 deleterious(0) possibly_damaging(0.761) TCGA-W3-A824-06 19 53385114 53385114 C T ZNF320 Missense_Mutation p.E89K 0.31 tolerated(0.17) benign(0.012) TCGA-W3-A824-06 19 53644659 53644659 C T ZNF347 Silent p.R475R 0.31 TCGA-W3-A824-06 19 53644760 53644760 G A ZNF347 Missense_Mutation p.R442C 0.38 tolerated(0.16) benign(0.029) TCGA-W3-A824-06 19 53741048 53741048 C T ZNF677 Missense_Mutation p.R311K 0.36 tolerated(0.19) benign(0.043) TCGA-W3-A824-06 19 53794431 53794431 G A BIRC8 5'UTR 0.29 TCGA-W3-A824-06 19 53879058 53879058 C T ZNF525 Silent p.F17F 0.23 TCGA-W3-A824-06 19 53959218 53959218 G A ZNF761 RNA 0.43 TCGA-W3-A824-06 19 54721334 54721334 C T LILRB3 Missense_Mutation p.D536N 0.06 tolerated(0.15) benign(0.002) TCGA-W3-A824-06 19 55144722 55144722 C T LILRB1 Missense_Mutation p.P405L 0.35 deleterious(0.05) benign(0.265) TCGA-W3-A824-06 19 55450931 55450931 G T NLRP7 Missense_Mutation p.A419D 0.39 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 19 55525976 55525976 G A GP6 Missense_Mutation p.S446F 0.48 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-W3-A824-06 19 55648508 55648508 G A TNNT1 Missense_Mutation p.P192S 0.30 deleterious(0.04) probably_damaging(1) TCGA-W3-A824-06 19 55687092 55687092 C T SYT5 Silent p.E175E 0.44 TCGA-W3-A824-06 19 56090229 56090229 C T ZNF579 Silent p.G259G 0.40 TCGA-W3-A824-06 19 56180056 56180056 C T U2AF2 Silent p.S281S 0.38 TCGA-W3-A824-06 19 56243949 56243949 C T NLRP9 Silent p.R416R 0.42 TCGA-W3-A824-06 19 56243950 56243950 C T NLRP9 Missense_Mutation p.R416Q 0.42 deleterious(0.04) possibly_damaging(0.837) TCGA-W3-A824-06 19 56416453 56416453 C T NLRP13 Missense_Mutation p.A825T 0.50 tolerated(0.19) benign(0.021) TCGA-W3-A824-06 19 57037212 57037212 C T ZNF471 Silent p.L592L 0.33 TCGA-W3-A824-06 19 57175286 57175286 G A ZNF835 Silent p.F427F 0.36 TCGA-W3-A824-06 19 57286670 57286670 C T ZIM2 Missense_Mutation p.E324K 0.40 tolerated(0.45) benign(0.001) TCGA-W3-A824-06 19 57325657 57325657 G A PEG3 Silent p.L1385L 0.39 TCGA-W3-A824-06 19 57641033 57641033 G A USP29 Missense_Mutation p.M330I 0.33 tolerated(0.21) benign(0.3) TCGA-W3-A824-06 19 58132941 58132941 C T ZNF134 3'UTR 0.30 TCGA-W3-A824-06 19 58619261 58619261 C T ZSCAN18 Intron 0.54 TCGA-W3-A824-06 19 58755387 58755387 G A ZNF544 5'UTR 0.41 TCGA-W3-A824-06 19 59059067 59059067 G A TRIM28 Missense_Mutation p.E276K 0.35 deleterious(0) possibly_damaging(0.681) TCGA-W3-A824-06 19 619646 619646 C T POLRMT Silent p.T1002T 0.05 TCGA-W3-A824-06 19 6475723 6475723 G A DENND1C Silent p.L273L 0.27 TCGA-W3-A824-06 19 6921886 6921886 G A EMR1 Missense_Mutation p.E595K 0.33 deleterious(0.04) possibly_damaging(0.468) TCGA-W3-A824-06 19 6935015 6935015 G A EMR1 Silent p.L769L 0.36 TCGA-W3-A824-06 19 7163050 7163050 G A INSR Silent p.C674C 0.33 TCGA-W3-A824-06 19 7682963 7682963 G A CAMSAP3 3'UTR 0.41 TCGA-W3-A824-06 19 7805422 7805422 G A CD209 3'UTR 0.40 TCGA-W3-A824-06 19 7927317 7927317 G A EVI5L Missense_Mutation p.R615H 0.35 tolerated(0.59) benign(0.128) TCGA-W3-A824-06 19 7975427 7975427 C T MAP2K7 Silent p.I179I 0.25 TCGA-W3-A824-06 19 8136957 8136957 C T FBN3 Missense_Mutation p.R2688Q 0.34 deleterious(0.02) possibly_damaging(0.781) TCGA-W3-A824-06 19 8609232 8609232 C T MYO1F Silent p.E491E 0.38 TCGA-W3-A824-06 19 8995654 8995654 G A MUC16 Silent p.A13778A 0.37 TCGA-W3-A824-06 19 9062665 9062665 C T MUC16 Missense_Mutation p.E8261K 0.45 unknown(0) TCGA-W3-A824-06 19 9066372 9066372 G A MUC16 Missense_Mutation p.S7025L 0.41 unknown(0) TCGA-W3-A824-06 19 9072557 9072557 G A MUC16 Silent p.S4963S 0.40 TCGA-W3-A824-06 19 9076931 9076931 C T MUC16 Silent p.V3505V 0.36 TCGA-W3-A824-06 19 9084037 9084037 G A MUC16 Missense_Mutation p.P2593L 0.32 unknown(0) TCGA-W3-A824-06 19 9089336 9089336 G A MUC16 Silent p.L827L 0.30 TCGA-W3-A824-06 19 9204103 9204103 C T OR1M1 Silent p.F61F 0.32 TCGA-W3-A824-06 19 9204404 9204404 C T OR1M1 Silent p.L162L 0.44 TCGA-W3-A824-06 19 9325456 9325456 C T OR7D4 Missense_Mutation p.D20N 0.26 tolerated(0.1) benign(0.022) TCGA-W3-A824-06 19 9583930 9583930 G A ZNF560 Nonsense_Mutation p.Q55* 0.39 TCGA-W3-A824-06 19 9965161 9965161 C T OLFM2 Missense_Mutation p.E356K 0.37 deleterious(0) possibly_damaging(0.698) TCGA-W3-A824-06 1 100178062 100178062 A G FRRS1 Missense_Mutation p.Y445H 0.43 tolerated(0.35) possibly_damaging(0.882) TCGA-W3-A824-06 1 109241974 109241974 T C PRPF38B Silent p.L325L 0.41 TCGA-W3-A824-06 1 109373270 109373270 C T AKNAD1 Silent p.E583E 0.24 TCGA-W3-A824-06 1 110561722 110561722 C T AHCYL1 Missense_Mutation p.S456F 0.45 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 11129654 11129654 G A EXOSC10 Missense_Mutation p.P817L 0.37 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 11129655 11129655 G A EXOSC10 Missense_Mutation p.P817S 0.37 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 1 11186743 11186743 C T MTOR Silent p.Q2154Q 0.45 TCGA-W3-A824-06 1 112238021 112238021 C T RAP1A Missense_Mutation p.S39F 0.36 tolerated(0.21) probably_damaging(0.994) TCGA-W3-A824-06 1 112318642 112318642 C T KCND3 3'UTR 0.27 TCGA-W3-A824-06 1 112525142 112525142 C T KCND3 Silent p.T69T 0.36 TCGA-W3-A824-06 1 113059920 113059920 G A WNT2B Missense_Mutation p.A287T 0.51 tolerated(0.07) possibly_damaging(0.893) TCGA-W3-A824-06 1 114377033 114377033 G A PTPN22 Silent p.S641S 0.34 TCGA-W3-A824-06 1 114438608 114438608 G C AP4B1 Silent p.L521L 0.39 TCGA-W3-A824-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.34 deleterious(0.01) benign(0.045) TCGA-W3-A824-06 1 115524070 115524070 C T SYCP1 Silent p.S832S 0.40 TCGA-W3-A824-06 1 115601555 115601555 G A TSPAN2 Silent p.Y131Y 0.33 TCGA-W3-A824-06 1 117504267 117504267 T C PTGFRN Missense_Mutation p.V539A 0.37 deleterious(0.02) benign(0.036) TCGA-W3-A824-06 1 11850730 11850730 C T MTHFR 3'UTR 0.29 TCGA-W3-A824-06 1 119467392 119467392 G A TBX15 Silent p.S84S 0.39 TCGA-W3-A824-06 1 120283122 120283122 C T PHGDH Silent p.T353T 0.38 TCGA-W3-A824-06 1 12885022 12885022 G A PRAMEF11 Silent p.I363I 0.34 TCGA-W3-A824-06 1 1293911 1293911 C T MXRA8 5'UTR 0.23 TCGA-W3-A824-06 1 144892358 144892358 G A PDE4DIP Intron 0.27 TCGA-W3-A824-06 1 144892359 144892359 G A PDE4DIP Intron 0.27 TCGA-W3-A824-06 1 147120143 147120154 GGTCAAAAATCC - ACP6 In_Frame_Del p.G346_H350delinsD 0.28 TCGA-W3-A824-06 1 147380982 147380982 C T GJA8 Silent p.F300F 0.36 TCGA-W3-A824-06 1 149903193 149903193 G A MTMR11 Missense_Mutation p.P417S 0.42 tolerated(0.05) probably_damaging(1) TCGA-W3-A824-06 1 150444215 150444215 C T RPRD2 Missense_Mutation p.P931S 0.39 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-W3-A824-06 1 150921733 150921733 C T SETDB1 Missense_Mutation p.S468F 0.37 deleterious(0.02) possibly_damaging(0.862) TCGA-W3-A824-06 1 151238550 151238550 C T PSMD4 Missense_Mutation p.S242F 0.38 deleterious(0) possibly_damaging(0.683) TCGA-W3-A824-06 1 152128826 152128826 G A RPTN Missense_Mutation p.S250F 0.35 deleterious(0) probably_damaging(0.926) TCGA-W3-A824-06 1 152278896 152278896 C T FLG Silent p.Q2822Q 0.13 TCGA-W3-A824-06 1 152284577 152284577 C T FLG Missense_Mutation p.G929S 0.42 probably_damaging(0.999) TCGA-W3-A824-06 1 152777541 152777541 G A LCE1C 3'UTR 0.32 TCGA-W3-A824-06 1 152777542 152777542 G A LCE1C 3'UTR 0.34 TCGA-W3-A824-06 1 152882514 152882514 G A IVL Missense_Mutation p.E81K 0.41 tolerated_low_confidence(0.06) unknown(0) TCGA-W3-A824-06 1 154480945 154480945 G A TDRD10 Silent p.L43L 0.34 TCGA-W3-A824-06 1 155023107 155023107 G A DCST1 Silent p.A628A 0.33 TCGA-W3-A824-06 1 155279703 155279703 C T FDPS Silent p.V41V 0.57 TCGA-W3-A824-06 1 155279704 155279704 C T FDPS Silent p.L42L 0.57 TCGA-W3-A824-06 1 155291887 155291887 C T RUSC1 Missense_Mutation p.S108F 0.35 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-W3-A824-06 1 155291888 155291888 C T RUSC1 Silent p.S108S 0.35 TCGA-W3-A824-06 1 155850991 155850991 C T SYT11 Missense_Mutation p.P330S 0.36 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 1 156508740 156508740 C T IQGAP3 Missense_Mutation p.G1048R 0.52 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 156554975 156554975 G A TTC24 Missense_Mutation p.E470K 0.31 tolerated_low_confidence(0.06) benign(0.014) TCGA-W3-A824-06 1 156697302 156697302 G A ISG20L2 Missense_Mutation p.P48L 0.40 tolerated(0.14) benign(0.01) TCGA-W3-A824-06 1 156811317 156811317 G A INSRR Silent p.S1177S 0.31 TCGA-W3-A824-06 1 157666124 157666124 G A FCRL3 Intron 0.48 TCGA-W3-A824-06 1 15771143 15771143 C T CTRC Missense_Mutation p.P179L 0.39 tolerated(0.27) benign(0.388) TCGA-W3-A824-06 1 15771144 15771144 C T CTRC Silent p.P179P 0.40 TCGA-W3-A824-06 1 158301195 158301195 G A CD1B Nonsense_Mutation p.Q7* 0.44 TCGA-W3-A824-06 1 158517746 158517746 G A OR6Y1 Silent p.I50I 0.41 TCGA-W3-A824-06 1 158607851 158607851 C T SPTA1 Missense_Mutation p.D1721N 0.43 tolerated(0.13) benign(0.06) TCGA-W3-A824-06 1 158735788 158735788 G A OR6N1 Missense_Mutation p.P229S 0.45 tolerated(0.06) benign(0.06) TCGA-W3-A824-06 1 159272208 159272208 C T FCER1A Silent p.F18F 0.33 TCGA-W3-A824-06 1 159684342 159684342 G A CRP 5'UTR 0.43 TCGA-W3-A824-06 1 160063911 160063911 G A IGSF8 Missense_Mutation p.R165C 0.26 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 1 160460411 160460411 G A SLAMF6 Silent p.V237V 0.38 TCGA-W3-A824-06 1 160523283 160523283 G A CD84 Silent p.I215I 0.38 TCGA-W3-A824-06 1 16101263 16101263 G A FBLIM1 Missense_Mutation p.E288K 0.45 tolerated(0.08) benign(0.091) TCGA-W3-A824-06 1 161970003 161970003 G A OLFML2B Silent p.V283V 0.39 TCGA-W3-A824-06 1 165649893 165649893 G A ALDH9A1 Missense_Mutation p.P207L 0.26 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 1 16817230 16817230 G A CROCCP3 RNA 0.20 TCGA-W3-A824-06 1 169336970 169336970 G A NME7 5'UTR 0.34 TCGA-W3-A824-06 1 169446703 169446703 A G SLC19A2 Missense_Mutation p.L166S 0.07 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 171310799 171310799 C T FMO4 Nonsense_Mutation p.R500* 0.34 TCGA-W3-A824-06 1 171548974 171548974 C T PRRC2C Missense_Mutation p.S2425L 0.41 possibly_damaging(0.895) TCGA-W3-A824-06 1 171755056 171755056 G A METTL13 Missense_Mutation p.M317I 0.54 deleterious(0.01) benign(0.017) TCGA-W3-A824-06 1 175324658 175324658 G A TNR Missense_Mutation p.S1077F 0.34 deleterious(0) probably_damaging(0.932) TCGA-W3-A824-06 1 17593282 17593282 G A PADI3 Silent p.P159P 0.38 TCGA-W3-A824-06 1 176668462 176668462 G A PAPPA2 Silent p.K991K 0.35 TCGA-W3-A824-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.41 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 1 177001804 177001804 C T ASTN1 Missense_Mutation p.R218H 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-A824-06 1 178408602 178408602 C T RASAL2 Silent p.S240S 0.28 TCGA-W3-A824-06 1 178427051 178427051 C T RASAL2 Missense_Mutation p.T875I 0.38 tolerated(0.12) benign(0.029) TCGA-W3-A824-06 1 178820443 178820443 C T ANGPTL1 Missense_Mutation p.A433T 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 1 179851740 179851740 C T TOR1AIP1 Nonsense_Mutation p.Q35* 0.19 TCGA-W3-A824-06 1 179887333 179887333 G - TOR1AIP1 Frame_Shift_Del p.V571Cfs*7 0.15 TCGA-W3-A824-06 1 181767840 181767840 C T CACNA1E Missense_Mutation p.P2271L 0.44 deleterious(0.02) probably_damaging(0.927) TCGA-W3-A824-06 1 182025717 182025717 G A ZNF648 Missense_Mutation p.P477S 0.29 tolerated(0.22) benign(0.122) TCGA-W3-A824-06 1 182355451 182355451 G A GLUL Missense_Mutation p.L139F 0.35 tolerated(0.1) benign(0.257) TCGA-W3-A824-06 1 183212287 183212287 C G LAMC2 Missense_Mutation p.P1112A 0.37 tolerated(0.14) probably_damaging(0.999) TCGA-W3-A824-06 1 183486830 183486830 C T SMG7 Missense_Mutation p.H63Y 0.37 tolerated(0.15) benign(0.078) TCGA-W3-A824-06 1 18692140 18692140 G A IGSF21 Missense_Mutation p.E322K 0.37 tolerated(0.13) possibly_damaging(0.643) TCGA-W3-A824-06 1 19166582 19166582 C T TAS1R2 Silent p.G677G 0.37 TCGA-W3-A824-06 1 192335222 192335222 C T RGS21 Missense_Mutation p.P143S 0.42 tolerated(0.68) benign(0) TCGA-W3-A824-06 1 1959731 1959731 G A GABRD Missense_Mutation p.A231T 0.17 tolerated(1) possibly_damaging(0.597) TCGA-W3-A824-06 1 196748926 196748926 G A CFHR3 Splice_Site p.X85_splice 0.45 TCGA-W3-A824-06 1 196876092 196876092 G A CFHR4 Missense_Mutation p.E180K 0.45 tolerated(0.37) probably_damaging(0.989) TCGA-W3-A824-06 1 197404294 197404294 G A CRB1 Missense_Mutation p.E1101K 0.41 tolerated(0.07) possibly_damaging(0.527) TCGA-W3-A824-06 1 197411281 197411281 C T CRB1 Intron 0.37 TCGA-W3-A824-06 1 197704893 197704893 G A DENND1B Intron 0.33 TCGA-W3-A824-06 1 197704894 197704894 G A DENND1B Intron 0.34 TCGA-W3-A824-06 1 198717244 198717244 C T PTPRC Missense_Mutation p.P952S 0.35 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 1 200567409 200567409 G A KIF14 Silent p.S835S 0.44 TCGA-W3-A824-06 1 20416322 20416322 G A PLA2G5 Missense_Mutation p.E76K 0.30 tolerated(1) benign(0.015) TCGA-W3-A824-06 1 204197882 204197882 C T PLEKHA6 Silent p.R953R 0.32 TCGA-W3-A824-06 1 205272503 205272503 G A NUAK2 3'UTR 0.57 TCGA-W3-A824-06 1 205500471 205500471 G A CDK18 Splice_Site p.X494_splice 0.41 TCGA-W3-A824-06 1 206317567 206317567 C T CTSE 5'UTR 0.17 TCGA-W3-A824-06 1 207106472 207106472 G A PIGR Missense_Mutation p.P582L 0.40 deleterious(0.04) benign(0.07) TCGA-W3-A824-06 1 207648531 207648531 G A CR2 Missense_Mutation p.V896M 0.42 tolerated(0.12) probably_damaging(0.952) TCGA-W3-A824-06 1 207751379 207751379 G A CR1 Silent p.T1589T 0.32 TCGA-W3-A824-06 1 207793355 207793355 G A CR1 Nonsense_Mutation p.W2399* 0.38 TCGA-W3-A824-06 1 209796400 209796400 G A LAMB3 Missense_Mutation p.A828V 0.33 deleterious(0) probably_damaging(0.987) TCGA-W3-A824-06 1 214507643 214507643 C A SMYD2 Missense_Mutation p.L405M 0.26 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 1 216262366 216262366 C T USH2A Missense_Mutation p.G1625E 0.40 benign(0.062) TCGA-W3-A824-06 1 216262367 216262367 C T USH2A Missense_Mutation p.G1625R 0.40 possibly_damaging(0.814) TCGA-W3-A824-06 1 216692626 216692626 C T ESRRG Missense_Mutation p.E346K 0.30 deleterious(0.03) benign(0.009) TCGA-W3-A824-06 1 218607775 218607775 G A TGFB2 Missense_Mutation p.E275K 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-W3-A824-06 1 22216506 22216506 G A HSPG2 Missense_Mutation p.P181L 0.38 benign(0.001) TCGA-W3-A824-06 1 222838865 222838865 A T MIA3 Silent p.V1876V 0.36 TCGA-W3-A824-06 1 223285861 223285861 G A TLR5 Silent p.S171S 0.37 TCGA-W3-A824-06 1 223396748 223396748 G A SUSD4 Silent p.T429T 0.37 TCGA-W3-A824-06 1 228345660 228345660 C T GJC2 Silent p.C67C 0.26 TCGA-W3-A824-06 1 228465484 228465484 G A OBSCN Missense_Mutation p.V2691I 0.37 probably_damaging(0.997) TCGA-W3-A824-06 1 228493017 228493017 C T OBSCN Silent p.S4820S 0.36 TCGA-W3-A824-06 1 228528846 228528846 G A OBSCN Silent p.K6873K 0.44 TCGA-W3-A824-06 1 228528847 228528847 G A OBSCN Missense_Mutation p.G6874S 0.44 possibly_damaging(0.737) TCGA-W3-A824-06 1 228554824 228554824 G A OBSCN Missense_Mutation p.G7483R 0.21 possibly_damaging(0.837) TCGA-W3-A824-06 1 229663006 229663006 C T ABCB10 Nonsense_Mutation p.W565* 0.27 TCGA-W3-A824-06 1 229773012 229773012 C T URB2 Silent p.I884I 0.41 TCGA-W3-A824-06 1 232538164 232538164 G A SIPA1L2 Nonsense_Mutation p.R1666* 0.26 TCGA-W3-A824-06 1 233270763 233270763 C T PCNXL2 Missense_Mutation p.S1278N 0.36 tolerated(0.25) benign(0.003) TCGA-W3-A824-06 1 233511623 233511623 G A MLK4 Intron 0.36 TCGA-W3-A824-06 1 237780661 237780661 G A RYR2 Missense_Mutation p.D1931N 0.38 benign(0.032) TCGA-W3-A824-06 1 237947095 237947095 C T RYR2 Missense_Mutation p.S4028L 0.28 benign(0.372) TCGA-W3-A824-06 1 241767808 241767808 G C OPN3 Missense_Mutation p.I149M 0.21 deleterious(0.03) benign(0.207) TCGA-W3-A824-06 1 2419046 2419046 G A PLCH2 Nonsense_Mutation p.W348* 0.28 TCGA-W3-A824-06 1 243736281 243736281 C T AKT3 Missense_Mutation p.V256I 0.36 tolerated(0.27) possibly_damaging(0.835) TCGA-W3-A824-06 1 247024280 247024280 T A AHCTF1 Silent p.V1360V 0.59 TCGA-W3-A824-06 1 247492847 247492847 G A ZNF496 Missense_Mutation p.P12S 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-A824-06 1 247607404 247607404 G A NLRP3 Missense_Mutation p.E934K 0.36 deleterious(0.05) benign(0.007) TCGA-W3-A824-06 1 247655195 247655195 C T OR2W5 RNA 0.44 TCGA-W3-A824-06 1 247751937 247751937 G A OR2G2 Missense_Mutation p.M92I 0.34 deleterious(0.01) benign(0.04) TCGA-W3-A824-06 1 247875614 247875614 G T OR6F1 Silent p.S148S 0.04 TCGA-W3-A824-06 1 248005162 248005162 G A OR11L1 Nonsense_Mutation p.Q13* 0.36 TCGA-W3-A824-06 1 248039464 248039464 G A TRIM58 Silent p.E378E 0.38 TCGA-W3-A824-06 1 248308528 248308528 C T OR2M5 Missense_Mutation p.L27F 0.36 deleterious(0.04) benign(0.242) TCGA-W3-A824-06 1 248343470 248343470 C T OR2M2 Silent p.F61F 0.42 TCGA-W3-A824-06 1 248685597 248685597 C T OR2G6 Missense_Mutation p.S217F 0.33 deleterious(0) probably_damaging(0.997) TCGA-W3-A824-06 1 248845270 248845270 G A OR14I1 Silent p.F112F 0.34 TCGA-W3-A824-06 1 24993365 24993365 C T SRRM1 Missense_Mutation p.P563L 0.24 unknown(0) TCGA-W3-A824-06 1 26581760 26581760 C T CEP85 Missense_Mutation p.P103S 0.38 tolerated(0.19) benign(0.168) TCGA-W3-A824-06 1 29069927 29069927 C T YTHDF2 Missense_Mutation p.P382L 0.32 deleterious(0.02) benign(0.006) TCGA-W3-A824-06 1 33248048 33248048 C T YARS Silent p.L333L 0.47 TCGA-W3-A824-06 1 3414963 3414963 G A MEGF6 Silent p.A1108A 0.31 TCGA-W3-A824-06 1 34191068 34191068 G A CSMD2 Silent p.I819I 0.36 TCGA-W3-A824-06 1 35250839 35250839 C T GJB3 Missense_Mutation p.P159L 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 36213619 36213619 G A CLSPN Missense_Mutation p.S839F 0.51 deleterious(0) probably_damaging(0.989) TCGA-W3-A824-06 1 36226355 36226355 G A CLSPN Silent p.I389I 0.35 TCGA-W3-A824-06 1 36552392 36552392 C A TEKT2 Silent p.L192L 0.36 TCGA-W3-A824-06 1 36553054 36553054 C T TEKT2 Silent p.I290I 0.32 TCGA-W3-A824-06 1 36932499 36932499 G A CSF3R Missense_Mutation p.P684L 0.34 tolerated(0.77) benign(0) TCGA-W3-A824-06 1 38227533 38227533 C T EPHA10 Missense_Mutation p.E132K 0.35 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 1 39945579 39945579 C T MACF1 Silent p.S5268S 0.35 TCGA-W3-A824-06 1 40627300 40627302 TTC AT RLF Frame_Shift_Del p.F77Ifs*39 0.21 TCGA-W3-A824-06 1 41296906 41296906 G A KCNQ4 Silent p.K481K 0.38 TCGA-W3-A824-06 1 42896418 42896418 G A ZMYND12 Missense_Mutation p.P363S 0.25 deleterious(0.01) benign(0.018) TCGA-W3-A824-06 1 43308522 43308522 C T ERMAP Silent p.F349F 0.40 TCGA-W3-A824-06 1 43778045 43778045 C T TIE1 Missense_Mutation p.S567F 0.37 deleterious(0.02) possibly_damaging(0.903) TCGA-W3-A824-06 1 44447534 44447534 C T B4GALT2 Missense_Mutation p.H192Y 0.35 tolerated(1) benign(0.07) TCGA-W3-A824-06 1 45120646 45120646 G A TMEM53 Missense_Mutation p.T140I 0.42 deleterious(0) possibly_damaging(0.549) TCGA-W3-A824-06 1 47399751 47399751 C T CYP4A11 Nonsense_Mutation p.W363* 0.15 TCGA-W3-A824-06 1 49208405 49208405 G A BEND5 Missense_Mutation p.L262F 0.24 deleterious(0.04) benign(0.023) TCGA-W3-A824-06 1 50666721 50666721 G A ELAVL4 Silent p.K341K 0.29 TCGA-W3-A824-06 1 52943551 52943551 G A ZCCHC11 Missense_Mutation p.P618S 0.41 tolerated(0.15) benign(0.07) TCGA-W3-A824-06 1 53458939 53458939 C T SCP2 Intron 0.03 TCGA-W3-A824-06 1 53516326 53516326 G A SCP2 Missense_Mutation p.A532T 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 1 53927256 53927256 G A DMRTB1 Missense_Mutation p.G230S 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-W3-A824-06 1 55139748 55139748 G A MROH7 Silent p.G620G 0.33 TCGA-W3-A824-06 1 55145629 55145629 G A MROH7 Silent p.Q764Q 0.35 TCGA-W3-A824-06 1 55145630 55145630 G A MROH7 Missense_Mutation p.V765M 0.36 deleterious(0.03) probably_damaging(0.922) TCGA-W3-A824-06 1 6270981 6270981 C T RNF207 Missense_Mutation p.P332S 0.50 tolerated(0.1) possibly_damaging(0.718) TCGA-W3-A824-06 1 6270982 6270982 C T RNF207 Missense_Mutation p.P332L 0.50 deleterious(0.02) probably_damaging(0.962) TCGA-W3-A824-06 1 62728920 62728920 G A KANK4 Missense_Mutation p.P795S 0.47 deleterious(0.04) possibly_damaging(0.857) TCGA-W3-A824-06 1 6504621 6504622 - A ESPN Frame_Shift_Ins p.N358Kfs*12 0.24 TCGA-W3-A824-06 1 6680012 6680012 C T PHF13 Silent p.L97L 0.31 TCGA-W3-A824-06 1 6680201 6680201 C T PHF13 Silent p.I160I 0.25 TCGA-W3-A824-06 1 70397244 70397244 C T LRRC7 Silent p.F196F 0.31 TCGA-W3-A824-06 1 71873039 71873039 C T NEGR1 3'UTR 0.39 TCGA-W3-A824-06 1 74663866 74663866 G A LRRIQ3 5'UTR 0.31 TCGA-W3-A824-06 1 75037154 75037154 C T C1orf173 Missense_Mutation p.E1414K 0.32 tolerated(0.31) benign(0.003) TCGA-W3-A824-06 1 75042611 75042611 G A C1orf173 Missense_Mutation p.S729L 0.38 tolerated(0.45) benign(0) TCGA-W3-A824-06 1 75188920 75188920 G A CRYZ Missense_Mutation p.P49L 0.37 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 1 7913087 7913087 C T UTS2 Intron 0.47 TCGA-W3-A824-06 1 79386016 79386016 G A ELTD1 Missense_Mutation p.S438L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 1 8073186 8073186 G A ERRFI1 3'UTR 0.38 TCGA-W3-A824-06 1 82417683 82417683 G A LPHN2 Missense_Mutation p.A547T 0.33 deleterious(0.02) benign(0.341) TCGA-W3-A824-06 1 8384548 8384548 G A SLC45A1 Silent p.R53R 0.37 TCGA-W3-A824-06 1 91967349 91967349 G T CDC7 Missense_Mutation p.G26C 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-W3-A824-06 1 91967350 91967350 G A CDC7 Missense_Mutation p.G26D 0.40 tolerated_low_confidence(0.79) benign(0.001) TCGA-W3-A824-06 1 94650952 94650952 C T ARHGAP29 Silent p.T622T 0.43 TCGA-W3-A824-06 1 9780259 9780259 G A PIK3CD Missense_Mutation p.E477K 0.43 tolerated(0.4) benign(0.075) TCGA-W3-A824-06 1 99767416 99767416 G A LPPR4 Missense_Mutation p.C310Y 0.38 deleterious(0.02) possibly_damaging(0.761) TCGA-W3-A824-06 20 1285876 1285876 G A SNPH Silent p.P221P 0.29 TCGA-W3-A824-06 20 1293375 1293375 G A SDCBP2 Missense_Mutation p.T139I 0.17 deleterious(0) possibly_damaging(0.467) TCGA-W3-A824-06 20 16488628 16488628 G A KIF16B Missense_Mutation p.A225V 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 20 1963657 1963657 C T PDYN Missense_Mutation p.R25Q 0.29 tolerated(1) benign(0.003) TCGA-W3-A824-06 20 22563620 22563620 G A FOXA2 Missense_Mutation p.S87F 0.25 deleterious(0.02) probably_damaging(0.961) TCGA-W3-A824-06 20 2308845 2308845 C T TGM3 Silent p.I389I 0.40 TCGA-W3-A824-06 20 2443767 2443767 G A SNRPB Missense_Mutation p.P176L 0.26 deleterious(0.01) unknown(0) TCGA-W3-A824-06 20 25263820 25263820 G A PYGB Silent p.G509G 0.29 TCGA-W3-A824-06 20 29847290 29847290 G A DEFB115 Missense_Mutation p.G41E 0.55 deleterious(0.03) possibly_damaging(0.479) TCGA-W3-A824-06 20 29965207 29965207 C T DEFB118 3'Flank 0.31 TCGA-W3-A824-06 20 30816110 30816110 C T POFUT1 Missense_Mutation p.P196L 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 20 32349795 32349795 C T ZNF341 Nonsense_Mutation p.R379* 0.35 TCGA-W3-A824-06 20 33439133 33439133 G A GGT7 Silent p.F542F 0.47 TCGA-W3-A824-06 20 3529981 3529981 C T ATRN Silent p.L370L 0.25 TCGA-W3-A824-06 20 35504601 35504601 C A TLDC2 Nonsense_Mutation p.Y8* 0.47 TCGA-W3-A824-06 20 3649466 3649466 G A ADAM33 3'UTR 0.44 TCGA-W3-A824-06 20 36869074 36869074 C T KIAA1755 Missense_Mutation p.E487K 0.42 deleterious(0.01) benign(0.051) TCGA-W3-A824-06 20 36870241 36870241 G A KIAA1755 Missense_Mutation p.L98F 0.37 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 20 36937454 36937454 G A BPI Missense_Mutation p.R127K 0.39 tolerated(0.32) benign(0.002) TCGA-W3-A824-06 20 3804940 3804940 G A AP5S1 Missense_Mutation p.R200H 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-W3-A824-06 20 39976201 39976201 G A LPIN3 Missense_Mutation p.E68K 0.35 deleterious(0.01) possibly_damaging(0.864) TCGA-W3-A824-06 20 42891901 42891901 G A GDAP1L1 Missense_Mutation p.M193I 0.37 tolerated(0.16) benign(0.045) TCGA-W3-A824-06 20 43052762 43052762 C T HNF4A Missense_Mutation p.R333C 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 20 43850391 43850391 C T SEMG2 Missense_Mutation p.P40S 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-W3-A824-06 20 43851397 43851397 C T SEMG2 Missense_Mutation p.S375L 0.42 tolerated(0.62) benign(0.307) TCGA-W3-A824-06 20 44174408 44174408 C T EPPIN-WFDC6 Silent p.R31R 0.41 TCGA-W3-A824-06 20 44470413 44470413 C T ACOT8 3'UTR 0.27 TCGA-W3-A824-06 20 45853112 45853112 C T ZMYND8 Silent p.A992A 0.07 TCGA-W3-A824-06 20 48124489 48124489 C T PTGIS Missense_Mutation p.D491N 0.35 deleterious(0) probably_damaging(0.984) TCGA-W3-A824-06 20 50224086 50224086 A G ATP9A Missense_Mutation p.V928A 0.27 deleterious(0.02) benign(0.046) TCGA-W3-A824-06 20 5099313 5099314 TT - PCNA Frame_Shift_Del p.K110Sfs*5 0.24 TCGA-W3-A824-06 20 52645411 52645411 C T BCAS1 Silent p.G81G 0.34 TCGA-W3-A824-06 20 57768759 57768759 G A ZNF831 Silent p.K895K 0.43 TCGA-W3-A824-06 20 58645793 58645793 G A C20orf197 Missense_Mutation p.G71R 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-W3-A824-06 20 5904744 5904744 G A CHGB Missense_Mutation p.E652K 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 20 60909298 60909298 G A LAMA5 Missense_Mutation p.P895S 0.17 benign(0.024) TCGA-W3-A824-06 20 60988601 60988601 C T RBBP8NL Missense_Mutation p.D511N 0.48 tolerated(0.26) benign(0.35) TCGA-W3-A824-06 20 61460315 61460315 C T COL9A3 Missense_Mutation p.P332L 0.57 tolerated(0.36) probably_damaging(0.999) TCGA-W3-A824-06 20 61959725 61959725 C T COL20A1 Missense_Mutation p.P1219L 0.38 tolerated(0.08) benign(0.009) TCGA-W3-A824-06 20 61960973 61960973 G A COL20A1 Missense_Mutation p.G1273E 0.27 deleterious(0.01) benign(0.093) TCGA-W3-A824-06 20 62038256 62038256 G A KCNQ2 Missense_Mutation p.S787F 0.40 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 20 62200595 62200595 C T HELZ2 Missense_Mutation p.V332M 0.16 tolerated(0.1) benign(0.015) TCGA-W3-A824-06 20 62551383 62551383 C T DNAJC5 Intron 0.11 TCGA-W3-A824-06 20 62854518 62854518 C T MYT1 Silent p.S817S 0.42 TCGA-W3-A824-06 20 62891502 62891502 C T PCMTD2 Missense_Mutation p.H62Y 0.31 deleterious(0) probably_damaging(0.963) TCGA-W3-A824-06 20 9523352 9523352 G A PAK7 Missense_Mutation p.L629F 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A824-06 20 9523353 9523353 G A PAK7 Silent p.S628S 0.27 TCGA-W3-A824-06 21 10934968 10934968 G A TPTE Silent p.H275H 0.08 TCGA-W3-A824-06 21 10998246 10998246 C T TPTE RNA 0.12 TCGA-W3-A824-06 21 11029673 11029673 G A BAGE2 RNA 0.12 TCGA-W3-A824-06 21 11038949 11038949 G A BAGE2 RNA 0.05 TCGA-W3-A824-06 21 19713836 19713836 G A TMPRSS15 Silent p.I486I 0.25 TCGA-W3-A824-06 21 31538297 31538297 C T CLDN17 Silent p.T213T 0.38 TCGA-W3-A824-06 21 37597909 37597909 C T DOPEY2 Missense_Mutation p.P473S 0.25 tolerated(0.09) possibly_damaging(0.493) TCGA-W3-A824-06 21 39755612 39755612 G A ERG Missense_Mutation p.R392C 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 21 40667782 40667782 T C BRWD1 Missense_Mutation p.T166A 0.38 tolerated(0.52) probably_damaging(0.952) TCGA-W3-A824-06 21 41725626 41725626 G A DSCAM Missense_Mutation p.R234C 0.27 deleterious(0.02) possibly_damaging(0.846) TCGA-W3-A824-06 21 42748809 42748809 C T MX2 5'UTR 0.30 TCGA-W3-A824-06 21 43280454 43280454 C T PRDM15 Missense_Mutation p.E307K 0.35 deleterious_low_confidence(0) benign(0.028) TCGA-W3-A824-06 21 45494207 45494207 C T TRAPPC10 Silent p.V347V 0.34 TCGA-W3-A824-06 21 45670695 45670695 C T DNMT3L Missense_Mutation p.E303K 0.37 deleterious(0.04) benign(0.321) TCGA-W3-A824-06 21 45725736 45725736 T A PFKL Intron 0.60 TCGA-W3-A824-06 21 45725738 45725738 C T PFKL Intron 0.58 TCGA-W3-A824-06 21 46000028 46000028 G A KRTAP10-5 Missense_Mutation p.P143L 0.31 deleterious(0.01) unknown(0) TCGA-W3-A824-06 21 46047774 46047774 C T KRTAP10-9 Missense_Mutation p.S229F 0.37 deleterious(0.01) possibly_damaging(0.788) TCGA-W3-A824-06 21 46900021 46900021 C T COL18A1 Missense_Mutation p.P630L 0.51 unknown(0) TCGA-W3-A824-06 22 17288883 17288883 C T XKR3 Silent p.Q27Q 0.46 TCGA-W3-A824-06 22 18064144 18064144 C T SLC25A18 Missense_Mutation p.T55M 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-W3-A824-06 22 19196463 19196463 G A CLTCL1 Silent p.Y1137Y 0.42 TCGA-W3-A824-06 22 19338952 19338952 G A HIRA Nonsense_Mutation p.R956* 0.32 TCGA-W3-A824-06 22 20080352 20080352 G A DGCR8 Missense_Mutation p.G543S 0.36 tolerated(0.62) probably_damaging(0.983) TCGA-W3-A824-06 22 20080353 20080353 G A DGCR8 Missense_Mutation p.G543D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A824-06 22 23063420 23063420 G A IGLV3-19 Missense_Mutation p.G43R 0.30 deleterious(0.02) probably_damaging(0.979) TCGA-W3-A824-06 22 23256453 23256453 G A IGLJ5 Missense_Mutation p.G16S 0.37 unknown(0) TCGA-W3-A824-06 22 23406278 23406278 G A RTDR1 Missense_Mutation p.S152F 0.40 deleterious(0) possibly_damaging(0.641) TCGA-W3-A824-06 22 23438522 23438522 C A GNAZ Missense_Mutation p.H214N 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-W3-A824-06 22 25275491 25275491 G A SGSM1 Missense_Mutation p.G553E 0.32 deleterious(0.01) probably_damaging(0.912) TCGA-W3-A824-06 22 25315904 25315904 G A SGSM1 Missense_Mutation p.R1101H 0.26 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 22 25617450 25617450 G A CRYBB2 Silent p.K18K 0.29 TCGA-W3-A824-06 22 26159264 26159264 G A MYO18B Missense_Mutation p.G36S 0.29 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 22 26423336 26423336 G A MYO18B Missense_Mutation p.D2466N 0.36 deleterious(0.01) benign(0.283) TCGA-W3-A824-06 22 26423606 26423606 G A MYO18B Missense_Mutation p.D2556N 0.42 deleterious(0) probably_damaging(0.932) TCGA-W3-A824-06 22 26688982 26688982 G A SEZ6L Silent p.E235E 0.32 TCGA-W3-A824-06 22 26702020 26702020 G A SEZ6L Missense_Mutation p.G475E 0.34 tolerated(0.14) benign(0.031) TCGA-W3-A824-06 22 26771578 26771578 G A SEZ6L Silent p.G955G 0.48 TCGA-W3-A824-06 22 26860391 26860391 C G HPS4 Missense_Mutation p.C402S 0.37 tolerated(0.41) benign(0.004) TCGA-W3-A824-06 22 28196337 28196337 C T MN1 Missense_Mutation p.M65I 0.28 benign(0.028) TCGA-W3-A824-06 22 29886372 29886372 G A NEFH Missense_Mutation p.E915K 0.37 tolerated_low_confidence(0.11) unknown(0) TCGA-W3-A824-06 22 29886470 29886470 G A NEFH Silent p.K947K 0.29 TCGA-W3-A824-06 22 30125483 30125483 C T CABP7 Silent p.C191C 0.35 TCGA-W3-A824-06 22 31345759 31345759 T A MORC2 Missense_Mutation p.Q37L 0.38 deleterious(0) benign(0.232) TCGA-W3-A824-06 22 33255246 33255246 G A TIMP3 Missense_Mutation p.G173D 0.34 tolerated(0.32) probably_damaging(1) TCGA-W3-A824-06 22 36716270 36716270 T C MYH9 Missense_Mutation p.Q336R 0.39 benign(0.144) TCGA-W3-A824-06 22 37462023 37462023 C T TMPRSS6 3'UTR 0.45 TCGA-W3-A824-06 22 37603678 37603678 G A SSTR3 Silent p.C55C 0.40 TCGA-W3-A824-06 22 37964300 37964300 C T CDC42EP1 Missense_Mutation p.P217S 0.06 tolerated(1) unknown(0) TCGA-W3-A824-06 22 38336819 38336819 C T MICALL1 Silent p.S858S 0.48 TCGA-W3-A824-06 22 38470942 38470942 G T PICK1 Missense_Mutation p.V351L 0.34 tolerated(0.36) benign(0.013) TCGA-W3-A824-06 22 39410313 39410313 C T APOBEC3C 5'UTR 0.28 TCGA-W3-A824-06 22 41574812 41574812 G A EP300 Missense_Mutation p.S2366N 0.06 benign(0.191) TCGA-W3-A824-06 22 42174800 42174800 G A MEI1 Missense_Mutation p.M933I 0.50 tolerated(0.06) benign(0.033) TCGA-W3-A824-06 22 42981320 42981320 G A POLDIP3 3'UTR 0.38 TCGA-W3-A824-06 22 43089396 43089396 C T A4GALT Missense_Mutation p.G188S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 22 46725290 46725290 G A GTSE1 Silent p.A654A 0.32 TCGA-W3-A824-06 22 50553619 50553619 T G MOV10L1 Silent p.P401P 0.34 TCGA-W3-A824-06 22 50927552 50927552 C A MIOX Missense_Mutation p.N164K 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 22 51133403 51133403 C T SHANK3 Missense_Mutation p.R411C 0.38 possibly_damaging(0.676) TCGA-W3-A824-06 2 108496501 108496501 C T RGPD4 Missense_Mutation p.H1668Y 0.37 deleterious_low_confidence(0.01) benign(0) TCGA-W3-A824-06 2 108863776 108863776 C T SULT1C3 Silent p.F42F 0.35 TCGA-W3-A824-06 2 109964145 109964145 C T SH3RF3 Missense_Mutation p.P197S 0.32 deleterious(0) possibly_damaging(0.78) TCGA-W3-A824-06 2 113012494 113012494 G A ZC3H8 Missense_Mutation p.S22F 0.48 tolerated_low_confidence(0.13) benign(0.003) TCGA-W3-A824-06 2 113780156 113780156 G A IL36B 3'UTR 0.38 TCGA-W3-A824-06 2 120219481 120219481 G A SCTR Silent p.L244L 0.39 TCGA-W3-A824-06 2 120385339 120385339 C T PCDP1 Missense_Mutation p.P543S 0.33 tolerated(0.52) benign(0.013) TCGA-W3-A824-06 2 121729595 121729595 G A GLI2 Missense_Mutation p.E380K 0.42 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 2 121736035 121736035 G A GLI2 Missense_Mutation p.G465E 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 121991701 121991701 C T TFCP2L1 Silent p.Q388Q 0.41 TCGA-W3-A824-06 2 125232437 125232437 G A CNTNAP5 Missense_Mutation p.R347Q 0.20 tolerated(0.25) possibly_damaging(0.626) TCGA-W3-A824-06 2 128322889 128322889 C A MYO7B Missense_Mutation p.R72S 0.34 tolerated(0.13) possibly_damaging(0.747) TCGA-W3-A824-06 2 131521439 131521439 T G AMER3 Missense_Mutation p.D598E 0.40 tolerated(0.33) benign(0.021) TCGA-W3-A824-06 2 131785570 131785570 C T ARHGEF4 Silent p.S160S 0.43 TCGA-W3-A824-06 2 132021891 132021891 T A POTEE Missense_Mutation p.F955I 0.16 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-W3-A824-06 2 135911238 135911238 C T RAB3GAP1 Missense_Mutation p.S694F 0.56 tolerated(0.88) benign(0.002) TCGA-W3-A824-06 2 136587232 136587232 G A LCT Silent p.F245F 0.39 TCGA-W3-A824-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.54 deleterious(0.02) possibly_damaging(0.486) TCGA-W3-A824-06 2 140990771 140990771 C T LRP1B Missense_Mutation p.R4595K 0.30 benign(0.067) TCGA-W3-A824-06 2 141072666 141072666 C T LRP1B Missense_Mutation p.D4215N 0.44 possibly_damaging(0.539) TCGA-W3-A824-06 2 141110633 141110633 C T LRP1B Missense_Mutation p.E3847K 0.34 possibly_damaging(0.621) TCGA-W3-A824-06 2 141253304 141253304 G A LRP1B Missense_Mutation p.P2955L 0.45 possibly_damaging(0.908) TCGA-W3-A824-06 2 141625696 141625696 C T LRP1B Missense_Mutation p.E1436K 0.34 benign(0.292) TCGA-W3-A824-06 2 141812805 141812805 C T LRP1B Missense_Mutation p.D478N 0.41 possibly_damaging(0.555) TCGA-W3-A824-06 2 143799718 143799718 G A KYNU Missense_Mutation p.D459N 0.07 tolerated(0.27) benign(0) TCGA-W3-A824-06 2 152107394 152107394 C T RBM43 3'UTR 0.38 TCGA-W3-A824-06 2 152222671 152222671 G A TNFAIP6 Missense_Mutation p.D112N 0.33 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 2 152410498 152410498 G A NEB Silent p.I6490I 0.40 TCGA-W3-A824-06 2 15607857 15607857 G A NBAS Missense_Mutation p.P650L 0.42 tolerated(0.38) benign(0.037) TCGA-W3-A824-06 2 160735857 160735857 T G LY75-CD302 Silent p.S476S 0.36 TCGA-W3-A824-06 2 160994076 160994076 G A ITGB6 Missense_Mutation p.S510F 0.34 tolerated(0.19) benign(0.089) TCGA-W3-A824-06 2 162894830 162894830 T C DPP4 Missense_Mutation p.T199A 0.41 tolerated(0.13) benign(0.004) TCGA-W3-A824-06 2 163374320 163374320 C T KCNH7 Missense_Mutation p.R271Q 0.33 deleterious(0.03) probably_damaging(0.981) TCGA-W3-A824-06 2 166170230 166170230 C T SCN2A Missense_Mutation p.R379C 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 166172087 166172087 G A SCN2A Missense_Mutation p.S497N 0.34 tolerated(0.29) possibly_damaging(0.759) TCGA-W3-A824-06 2 166172088 166172088 T G SCN2A Missense_Mutation p.S497R 0.33 tolerated(0.08) probably_damaging(0.937) TCGA-W3-A824-06 2 166897748 166897748 C T SCN1A Missense_Mutation p.G803E 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 2 167279781 167279781 G A SCN7A Silent p.F1005F 0.47 TCGA-W3-A824-06 2 170060492 170060492 C T LRP2 Missense_Mutation p.G2669S 0.38 probably_damaging(0.998) TCGA-W3-A824-06 2 170062009 170062009 G A LRP2 Silent p.L2565L 0.49 TCGA-W3-A824-06 2 170134283 170134283 C T LRP2 Missense_Mutation p.E582K 0.45 probably_damaging(0.927) TCGA-W3-A824-06 2 17692158 17692158 C T RAD51AP2 Silent p.R1131R 0.41 TCGA-W3-A824-06 2 176959355 176959355 C T HOXD13 Missense_Mutation p.S310L 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 2 176981945 176981945 C T HOXD10 Silent p.V128V 0.36 TCGA-W3-A824-06 2 176987564 176987564 A G HOXD9 Missense_Mutation p.D23G 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 179442588 179442588 C T TTN Silent p.R22855R 0.42 TCGA-W3-A824-06 2 179466211 179466211 C T TTN Missense_Mutation p.D18505N 0.40 TCGA-W3-A824-06 2 179536890 179536890 G A TTN Missense_Mutation p.P11679S 0.40 TCGA-W3-A824-06 2 179537156 179537156 C T TTN Silent p.K11636K 0.39 TCGA-W3-A824-06 2 179556779 179556779 G A TTN Missense_Mutation p.P10576S 0.38 TCGA-W3-A824-06 2 179574413 179574413 T C TTN Missense_Mutation p.K9545E 0.43 TCGA-W3-A824-06 2 179584741 179584741 C T TTN Missense_Mutation p.M7876I 0.36 TCGA-W3-A824-06 2 179584988 179584988 G A TTN Missense_Mutation p.P7794L 0.43 TCGA-W3-A824-06 2 179587218 179587218 C T TTN Silent p.V7432V 0.41 TCGA-W3-A824-06 2 179596618 179596618 C T TTN Missense_Mutation p.G5662S 0.39 TCGA-W3-A824-06 2 179606140 179606140 G A TTN Silent p.F3940F 0.29 TCGA-W3-A824-06 2 179614310 179614310 G A TTN Intron 0.30 TCGA-W3-A824-06 2 179637892 179637892 C T TTN Missense_Mutation p.G2600E 0.47 TCGA-W3-A824-06 2 179648927 179648927 G A TTN Missense_Mutation p.P882L 0.33 TCGA-W3-A824-06 2 182374525 182374525 G A ITGA4 Missense_Mutation p.M612I 0.30 tolerated(1) benign(0) TCGA-W3-A824-06 2 182386925 182386925 G A ITGA4 Missense_Mutation p.E644K 0.36 tolerated(0.16) probably_damaging(0.936) TCGA-W3-A824-06 2 182399587 182399587 C T ITGA4 Silent p.F976F 0.38 TCGA-W3-A824-06 2 182468804 182468804 C T CERKL Missense_Mutation p.D81N 0.23 tolerated(0.19) benign(0.013) TCGA-W3-A824-06 2 185798386 185798386 G A ZNF804A Silent p.R104R 0.27 TCGA-W3-A824-06 2 185801778 185801778 C T ZNF804A Missense_Mutation p.S552F 0.24 deleterious(0) probably_damaging(0.986) TCGA-W3-A824-06 2 187694476 187694476 C T ZSWIM2 Missense_Mutation p.R358K 0.31 deleterious(0.01) probably_damaging(0.93) TCGA-W3-A824-06 2 188349540 188349540 C T TFPI Missense_Mutation p.G178D 0.33 tolerated(0.49) benign(0.067) TCGA-W3-A824-06 2 189449101 189449101 C T GULP1 Missense_Mutation p.P240L 0.25 deleterious(0.01) possibly_damaging(0.521) TCGA-W3-A824-06 2 189852829 189852829 C T COL3A1 Missense_Mutation p.P184L 0.34 unknown(0) TCGA-W3-A824-06 2 189867067 189867067 C T COL3A1 Missense_Mutation p.P812L 0.50 unknown(0) TCGA-W3-A824-06 2 191235591 191235591 G A INPP1 Nonsense_Mutation p.W221* 0.39 TCGA-W3-A824-06 2 192543766 192543766 G A NABP1 Missense_Mutation p.A48T 0.27 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 2 192701296 192701296 C T SDPR Missense_Mutation p.D211N 0.40 tolerated(0.14) benign(0.037) TCGA-W3-A824-06 2 196726616 196726616 C T DNAH7 Missense_Mutation p.E2521K 0.38 deleterious(0.01) possibly_damaging(0.461) TCGA-W3-A824-06 2 196801391 196801391 G A DNAH7 Silent p.F1068F 0.35 TCGA-W3-A824-06 2 201332120 201332120 A - SPATS2L Frame_Shift_Del p.K319Sfs*26 0.31 TCGA-W3-A824-06 2 201437040 201437040 C T SGOL2 Silent p.I657I 0.45 TCGA-W3-A824-06 2 201515870 201515870 G A AOX1 Silent p.L1007L 0.32 TCGA-W3-A824-06 2 204036680 204036680 T G NBEAL1 Missense_Mutation p.F2015L 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 207170653 207170653 G A ZDBF2 Missense_Mutation p.M467I 0.41 tolerated(0.15) benign(0.091) TCGA-W3-A824-06 2 207346009 207346009 C T ADAM23 Silent p.F162F 0.19 TCGA-W3-A824-06 2 208866378 208866378 G A PLEKHM3 5'UTR 0.38 TCGA-W3-A824-06 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-W3-A824-06 2 211179661 211179661 C T MYL1 Missense_Mutation p.E36K 0.31 tolerated(0.26) benign(0.037) TCGA-W3-A824-06 2 21229552 21229552 G A APOB Silent p.A3396A 0.37 TCGA-W3-A824-06 2 21232483 21232483 G A APOB Silent p.F2419F 0.35 TCGA-W3-A824-06 2 216200842 216200842 C T ATIC Missense_Mutation p.L365F 0.38 deleterious(0.05) possibly_damaging(0.775) TCGA-W3-A824-06 2 217363524 217363524 C T RPL37A 5'UTR 0.41 TCGA-W3-A824-06 2 218940109 218940109 G A RUFY4 Silent p.Q318Q 0.30 TCGA-W3-A824-06 2 219300138 219300138 C T VIL1 Missense_Mutation p.P603S 0.32 deleterious(0.03) benign(0.259) TCGA-W3-A824-06 2 223066673 223066673 C G PAX3 Missense_Mutation p.Q470H 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-A824-06 2 227872752 227872752 G A COL4A4 Silent p.I1597I 0.50 TCGA-W3-A824-06 2 228476086 228476086 G A C2orf83 3'UTR 0.37 TCGA-W3-A824-06 2 228563913 228563913 T C SLC19A3 Missense_Mutation p.N173S 0.38 tolerated(0.06) probably_damaging(0.955) TCGA-W3-A824-06 2 228883084 228883084 G A SPHKAP Missense_Mutation p.S829F 0.34 tolerated(0.11) benign(0.019) TCGA-W3-A824-06 2 230271965 230271965 C G DNER Missense_Mutation p.C569S 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 231103072 231103072 G A SP140 Missense_Mutation p.E128K 0.32 tolerated(0.09) benign(0.418) TCGA-W3-A824-06 2 231157484 231157484 C T SP140 Missense_Mutation p.P650L 0.31 deleterious(0) probably_damaging(0.977) TCGA-W3-A824-06 2 232458765 232458765 C T C2orf57 Missense_Mutation p.T368I 0.32 deleterious(0) probably_damaging(0.934) TCGA-W3-A824-06 2 233321862 233321862 A C ALPI Missense_Mutation p.K160Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 2 233785053 233785053 C T NGEF Missense_Mutation p.E257K 0.41 tolerated(0.4) benign(0.442) TCGA-W3-A824-06 2 233899297 233899297 G A NEU2 Missense_Mutation p.E225K 0.47 tolerated(0.63) benign(0.002) TCGA-W3-A824-06 2 234217848 234217848 G A SAG Missense_Mutation p.G5R 0.28 tolerated_low_confidence(0.13) benign(0.336) TCGA-W3-A824-06 2 234394559 234394559 G A USP40 Silent p.L1099L 0.25 TCGA-W3-A824-06 2 234676891 234676891 C T UGT1A10 Silent p.I367I 0.43 TCGA-W3-A824-06 2 237374192 237374192 C T IQCA1 Silent p.K294K 0.26 TCGA-W3-A824-06 2 238285767 238285767 C T COL6A3 Missense_Mutation p.M906I 0.38 probably_damaging(0.998) TCGA-W3-A824-06 2 238730394 238730394 A G RBM44 Missense_Mutation p.E711G 0.29 tolerated(1) benign(0.001) TCGA-W3-A824-06 2 239162210 239162210 G A PER2 Silent p.S818S 0.50 TCGA-W3-A824-06 2 242135276 242135276 C A ANO7 Intron 0.31 TCGA-W3-A824-06 2 242795020 242795020 G A PDCD1 Silent p.F63F 0.27 TCGA-W3-A824-06 2 242814220 242814220 C T CXXC11 Silent p.F171F 0.36 TCGA-W3-A824-06 2 25062828 25062828 G A ADCY3 Silent p.G423G 0.06 TCGA-W3-A824-06 2 25141778 25141778 C T ADCY3 Missense_Mutation p.D27N 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.669) TCGA-W3-A824-06 2 25982407 25982407 G A ASXL2 Missense_Mutation p.L295F 0.41 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 2 26539869 26539869 G A GPR113 Missense_Mutation p.P138L 0.35 tolerated_low_confidence(0.19) benign(0.025) TCGA-W3-A824-06 2 26725206 26725206 G A OTOF Silent p.A224A 0.33 TCGA-W3-A824-06 2 27292485 27292485 G A AGBL5 Silent p.G800G 0.40 TCGA-W3-A824-06 2 29258388 29258388 G A FAM179A Missense_Mutation p.E762K 0.38 deleterious(0.01) benign(0.216) TCGA-W3-A824-06 2 29474131 29474131 G A ALK Missense_Mutation p.H682Y 0.41 tolerated(0.64) possibly_damaging(0.624) TCGA-W3-A824-06 2 31562541 31562541 C T XDH Silent p.V1196V 0.50 TCGA-W3-A824-06 2 33540246 33540246 C T LTBP1 Missense_Mutation p.P1214S 0.31 tolerated(0.74) benign(0.364) TCGA-W3-A824-06 2 37082400 37082400 C T STRN Missense_Mutation p.E645K 0.28 deleterious(0) probably_damaging(0.987) TCGA-W3-A824-06 2 37302699 37302699 G A HEATR5B Missense_Mutation p.R176C 0.40 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 2 38178411 38178411 C T RMDN2 Missense_Mutation p.S18F 0.39 tolerated_low_confidence(0.05) benign(0.017) TCGA-W3-A824-06 2 38224658 38224658 G A RMDN2 Splice_Site p.X526_splice 0.27 TCGA-W3-A824-06 2 48906497 48906497 G A STON1-GTF2A1L Nonsense_Mutation p.W1155* 0.32 TCGA-W3-A824-06 2 49217718 49217718 G A FSHR Nonsense_Mutation p.Q145* 0.31 TCGA-W3-A824-06 2 51254707 51254707 G A NRXN1 Silent p.S235S 0.65 TCGA-W3-A824-06 2 68358394 68358394 G A WDR92 Silent p.I350I 0.35 TCGA-W3-A824-06 2 71635266 71635266 A G ZNF638 Silent p.L1050L 0.31 TCGA-W3-A824-06 2 71795422 71795422 G A DYSF Missense_Mutation p.A940T 0.40 tolerated(0.71) benign(0.003) TCGA-W3-A824-06 2 71896287 71896287 G A DYSF Silent p.L1864L 0.38 TCGA-W3-A824-06 2 72740272 72740272 G A EXOC6B Missense_Mutation p.R386C 0.34 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 2 85133673 85133673 C T TMSB10 3'UTR 0.44 TCGA-W3-A824-06 2 85777735 85777735 G A GGCX Missense_Mutation p.P676L 0.41 tolerated(0.06) benign(0.06) TCGA-W3-A824-06 2 85890934 85890934 C T SFTPB Missense_Mutation p.V249M 0.50 deleterious(0.03) possibly_damaging(0.84) TCGA-W3-A824-06 2 86691332 86691332 C T KDM3A Missense_Mutation p.P334S 0.37 deleterious_low_confidence(0.01) benign(0.21) TCGA-W3-A824-06 2 88393066 88393066 C T SMYD1 Silent p.T230T 0.40 TCGA-W3-A824-06 2 89117840 89117840 G A AC096579.13 RNA 0.40 TCGA-W3-A824-06 2 8940562 8940562 G A KIDINS220 Nonsense_Mutation p.Q290* 0.39 TCGA-W3-A824-06 2 90077803 90077803 C T IGKV3D-20 Silent p.F9F 0.29 TCGA-W3-A824-06 2 90108977 90108985 GGTTCAGTG - IGKV6D-41 In_Frame_Del p.R81_G84delinsS 0.26 TCGA-W3-A824-06 2 95953982 95953982 C T PROM2 Silent p.C756C 0.31 TCGA-W3-A824-06 2 96260101 96260101 C T TRIM43 Silent p.L110L 0.36 TCGA-W3-A824-06 2 96943421 96943421 G A SNRNP200 Silent p.V1929V 0.37 TCGA-W3-A824-06 2 97217268 97217268 C T ARID5A Missense_Mutation p.P335S 0.39 tolerated(0.17) benign(0.064) TCGA-W3-A824-06 2 97217269 97217269 C T ARID5A Missense_Mutation p.P335L 0.37 tolerated(0.11) benign(0.016) TCGA-W3-A824-06 2 97377624 97377624 G A LMAN2L Missense_Mutation p.R227C 0.38 deleterious(0.01) possibly_damaging(0.878) TCGA-W3-A824-06 2 97749728 97749728 G A FAHD2B Missense_Mutation p.P280L 0.37 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 2 98853100 98853100 C T VWA3B Silent p.T860T 0.40 TCGA-W3-A824-06 2 99013064 99013064 G A CNGA3 Silent p.L477L 0.39 TCGA-W3-A824-06 2 99790448 99790448 G A MITD1 Silent p.L61L 0.43 TCGA-W3-A824-06 3 100963111 100963111 G A IMPG2 Silent p.P688P 0.26 TCGA-W3-A824-06 3 108682299 108682299 G A MORC1 Missense_Mutation p.R921C 0.33 deleterious(0.02) benign(0.063) TCGA-W3-A824-06 3 111312682 111312682 C T ZBED2 Missense_Mutation p.D123N 0.38 tolerated(0.28) benign(0.003) TCGA-W3-A824-06 3 111564736 111564736 G A PLCXD2 3'UTR 0.37 TCGA-W3-A824-06 3 113081866 113081866 G A WDR52 Intron 0.27 TCGA-W3-A824-06 3 113322812 113322812 C T SIDT1 Silent p.F423F 0.24 TCGA-W3-A824-06 3 119133727 119133727 C A ARHGAP31 Missense_Mutation p.S984Y 0.46 tolerated(1) benign(0.004) TCGA-W3-A824-06 3 121416445 121416445 T C GOLGB1 Silent p.G975G 0.35 TCGA-W3-A824-06 3 121712295 121712295 G A ILDR1 Missense_Mutation p.P434L 0.57 tolerated(0.22) benign(0.066) TCGA-W3-A824-06 3 121973151 121973151 C T CASR Missense_Mutation p.P39S 0.36 tolerated(0.33) probably_damaging(0.962) TCGA-W3-A824-06 3 123023001 123023001 G A ADCY5 Silent p.S824S 0.44 TCGA-W3-A824-06 3 123339187 123339187 G A MYLK Intron 0.28 TCGA-W3-A824-06 3 123987890 123987890 C T KALRN Missense_Mutation p.R251W 0.50 deleterious(0) probably_damaging(0.921) TCGA-W3-A824-06 3 124487900 124487900 G A ITGB5 Silent p.S659S 0.29 TCGA-W3-A824-06 3 12475398 12475398 C T PPARG Silent p.D424D 0.40 TCGA-W3-A824-06 3 125872207 125872207 G A ALDH1L1 Intron 0.27 TCGA-W3-A824-06 3 125877270 125877270 G A ALDH1L1 Nonsense_Mutation p.R124* 0.44 TCGA-W3-A824-06 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.26 deleterious(0.01) benign(0.226) TCGA-W3-A824-06 3 127325616 127325616 C T MCM2 Missense_Mutation p.P353S 0.27 tolerated(0.15) probably_damaging(0.948) TCGA-W3-A824-06 3 127842464 127842464 G A RUVBL1 Missense_Mutation p.A35V 0.33 tolerated(0.87) benign(0) TCGA-W3-A824-06 3 130345350 130345350 G A COL6A6 Missense_Mutation p.E1634K 0.34 tolerated(0.69) benign(0.002) TCGA-W3-A824-06 3 131442376 131442376 G A CPNE4 Missense_Mutation p.R92W 0.32 deleterious(0) possibly_damaging(0.786) TCGA-W3-A824-06 3 133496033 133496033 A C TF Silent p.G671G 0.45 TCGA-W3-A824-06 3 133878183 133878183 G A RYK Missense_Mutation p.T538I 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-A824-06 3 13407520 13407520 G A NUP210 Missense_Mutation p.L620F 0.31 deleterious(0.02) possibly_damaging(0.646) TCGA-W3-A824-06 3 135720917 135720917 C T PPP2R3A Silent p.L193L 0.32 TCGA-W3-A824-06 3 137743492 137743492 G T CLDN18 Silent p.L143L 0.29 TCGA-W3-A824-06 3 138724476 138724476 G A PRR23A Missense_Mutation p.P212L 0.31 tolerated(0.08) possibly_damaging(0.572) TCGA-W3-A824-06 3 140178374 140178374 G T CLSTN2 Missense_Mutation p.G329C 0.44 deleterious(0) probably_damaging(0.971) TCGA-W3-A824-06 3 142102234 142102234 G A XRN1 Missense_Mutation p.R842C 0.08 deleterious(0.04) possibly_damaging(0.586) TCGA-W3-A824-06 3 143292979 143292979 G A SLC9A9 Silent p.F317F 0.21 TCGA-W3-A824-06 3 14549188 14549188 C T GRIP2 RNA 0.47 TCGA-W3-A824-06 3 150931518 150931518 C T P2RY14 Nonsense_Mutation p.W196* 0.47 TCGA-W3-A824-06 3 164767594 164767594 G A SI Missense_Mutation p.P528S 0.31 deleterious(0) probably_damaging(0.984) TCGA-W3-A824-06 3 16638284 16638284 C T DAZL Silent p.T177T 0.28 TCGA-W3-A824-06 3 167159970 167159970 G A SERPINI2 Missense_Mutation p.S382L 0.38 deleterious(0) benign(0.062) TCGA-W3-A824-06 3 168807887 168807887 C T MECOM Missense_Mutation p.G978E 0.39 tolerated(1) benign(0.002) TCGA-W3-A824-06 3 170216668 170216668 C T SLC7A14 Missense_Mutation p.G183S 0.52 tolerated(0.06) probably_damaging(0.981) TCGA-W3-A824-06 3 172607231 172607231 G A SPATA16 3'UTR 0.29 TCGA-W3-A824-06 3 183689410 183689410 G A ABCC5 Missense_Mutation p.H568Y 0.39 deleterious(0.05) benign(0.071) TCGA-W3-A824-06 3 183962404 183962404 G A ALG3 Silent p.I237I 0.50 TCGA-W3-A824-06 3 184588534 184588534 C T VPS8 Nonsense_Mutation p.R559* 0.34 TCGA-W3-A824-06 3 187386765 187386765 C T SST 3'UTR 0.34 TCGA-W3-A824-06 3 187446865 187446865 G A BCL6 Missense_Mutation p.A443V 0.40 deleterious(0.01) benign(0.342) TCGA-W3-A824-06 3 189690698 189690698 G A LEPREL1 Missense_Mutation p.S555F 0.42 deleterious(0.01) possibly_damaging(0.546) TCGA-W3-A824-06 3 189700926 189700926 G A LEPREL1 Silent p.V411V 0.47 TCGA-W3-A824-06 3 195453296 195453296 C T MUC20 Missense_Mutation p.P608S 0.25 tolerated(0.11) unknown(0) TCGA-W3-A824-06 3 195517855 195517855 C T MUC4 Nonsense_Mutation p.W199* 0.42 TCGA-W3-A824-06 3 21462702 21462702 G A ZNF385D 3'UTR 0.43 TCGA-W3-A824-06 3 21792454 21792454 C T ZNF385D 5'UTR 0.45 TCGA-W3-A824-06 3 30032616 30032616 C T RBMS3 Missense_Mutation p.S408F 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-W3-A824-06 3 32031569 32031569 G A ZNF860 Missense_Mutation p.R333K 0.31 tolerated(0.33) benign(0.047) TCGA-W3-A824-06 3 36779914 36779914 G A DCLK3 Silent p.I79I 0.33 TCGA-W3-A824-06 3 36874402 36874402 C T TRANK1 Silent p.S2180S 0.29 TCGA-W3-A824-06 3 36898450 36898450 C T TRANK1 Silent p.T877T 0.56 TCGA-W3-A824-06 3 37034268 37034268 C T EPM2AIP1 Missense_Mutation p.G101S 0.37 tolerated(1) benign(0.061) TCGA-W3-A824-06 3 37081724 37081724 C T MLH1 Missense_Mutation p.P536S 0.43 tolerated(0.05) benign(0.432) TCGA-W3-A824-06 3 3887202 3887202 G A LRRN1 Missense_Mutation p.G293R 0.38 deleterious(0) possibly_damaging(0.826) TCGA-W3-A824-06 3 3887203 3887203 G A LRRN1 Missense_Mutation p.G293E 0.38 deleterious(0) possibly_damaging(0.758) TCGA-W3-A824-06 3 38912189 38912189 G A SCN11A Missense_Mutation p.S1269F 0.32 deleterious(0.01) benign(0.202) TCGA-W3-A824-06 3 38991630 38991630 C T SCN11A Missense_Mutation p.G75E 0.34 deleterious(0) possibly_damaging(0.632) TCGA-W3-A824-06 3 39169944 39169944 C T TTC21A Missense_Mutation p.H556Y 0.39 deleterious(0.02) probably_damaging(0.977) TCGA-W3-A824-06 3 42599070 42599070 C T SEC22C Silent p.Q215Q 0.35 TCGA-W3-A824-06 3 42916049 42916049 G A CYP8B1 Silent p.F420F 0.44 TCGA-W3-A824-06 3 4669467 4669467 C T ITPR1 Missense_Mutation p.P62S 0.27 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 3 46757175 46757175 G A PRSS50 Missense_Mutation p.S107F 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 3 46904860 46904860 C T MYL3 Silent p.E7E 0.24 TCGA-W3-A824-06 3 46967000 46967000 G A CCDC12 Missense_Mutation p.P77S 0.56 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 3 4709087 4709087 C T ITPR1 Silent p.F565F 0.20 TCGA-W3-A824-06 3 47470067 47470067 G A SCAP Missense_Mutation p.R116C 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 3 48506401 48506401 G A ATRIP Missense_Mutation p.E743K 0.34 deleterious(0) benign(0.24) TCGA-W3-A824-06 3 48604154 48604154 G A COL7A1 Missense_Mutation p.P2748L 0.30 probably_damaging(0.977) TCGA-W3-A824-06 3 48630052 48630052 G A COL7A1 Silent p.A309A 0.44 TCGA-W3-A824-06 3 48631083 48631083 G A COL7A1 Missense_Mutation p.R105C 0.30 unknown(0) TCGA-W3-A824-06 3 48698784 48698784 G A CELSR3 Silent p.D428D 0.36 TCGA-W3-A824-06 3 49377405 49377405 G A USP4 Missense_Mutation p.S18F 0.30 deleterious(0.02) benign(0.34) TCGA-W3-A824-06 3 49689154 49689154 C T BSN Missense_Mutation p.S722F 0.28 unknown(0) TCGA-W3-A824-06 3 49720852 49720852 G A APEH 3'UTR 0.32 TCGA-W3-A824-06 3 51126711 51126711 C T DOCK3 Missense_Mutation p.S196F 0.40 deleterious(0.01) benign(0.326) TCGA-W3-A824-06 3 51370636 51370636 C T DOCK3 Missense_Mutation p.S1188F 0.50 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.31 TCGA-W3-A824-06 3 51749298 51749298 C T GRM2 Silent p.P503P 0.42 TCGA-W3-A824-06 3 52015127 52015127 G A ABHD14A 3'UTR 0.31 TCGA-W3-A824-06 3 52379571 52379571 C T DNAH1 Missense_Mutation p.S502F 0.29 possibly_damaging(0.872) TCGA-W3-A824-06 3 52472100 52472100 C T SEMA3G Nonsense_Mutation p.W542* 0.20 TCGA-W3-A824-06 3 52540734 52540734 G A STAB1 Silent p.G619G 0.60 TCGA-W3-A824-06 3 52812968 52812968 G A ITIH1 Missense_Mutation p.G106R 0.32 deleterious(0.03) benign(0.042) TCGA-W3-A824-06 3 52836469 52836469 C T ITIH3 Silent p.I501I 0.40 TCGA-W3-A824-06 3 54925381 54925381 G A CACNA2D3 Splice_Site p.X717_splice 0.42 TCGA-W3-A824-06 3 58792134 58792134 G A C3orf67 Missense_Mutation p.P491S 0.36 tolerated(0.16) possibly_damaging(0.557) TCGA-W3-A824-06 3 59999785 59999785 C T FHIT Missense_Mutation p.G66E 0.37 deleterious(0) benign(0.146) TCGA-W3-A824-06 3 62189051 62189051 T G PTPRG Missense_Mutation p.S528A 0.27 tolerated(0.07) probably_damaging(0.99) TCGA-W3-A824-06 3 62307720 62307720 C T C3orf14 Missense_Mutation p.L57F 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 3 65365021 65365021 G A MAGI1 Silent p.D970D 0.29 TCGA-W3-A824-06 3 66433536 66433536 C T LRIG1 Silent p.R787R 0.38 TCGA-W3-A824-06 3 88040597 88040597 G A HTR1F Missense_Mutation p.S233N 0.33 tolerated(0.26) benign(0.002) TCGA-W3-A824-06 3 88190222 88190222 G A ZNF654 Intron 0.27 TCGA-W3-A824-06 3 9027177 9027177 C T SRGAP3 3'UTR 0.35 TCGA-W3-A824-06 3 9032356 9032356 G A SRGAP3 Missense_Mutation p.P909L 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-W3-A824-06 3 97194275 97194275 C T EPHA6 Silent p.I658I 0.25 TCGA-W3-A824-06 3 9986073 9986073 T C CRELD1 Nonstop_Mutation p.*423Rext*42 0.46 TCGA-W3-A824-06 4 100242474 100242474 T C ADH1B Silent p.G5G 0.32 TCGA-W3-A824-06 4 104510858 104510858 G A TACR3 Missense_Mutation p.S460F 0.33 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-W3-A824-06 4 106156965 106156965 G A TET2 Silent p.Q622Q 0.20 TCGA-W3-A824-06 4 107845734 107845734 C T DKK2 Missense_Mutation p.G166E 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-W3-A824-06 4 115856484 115856484 G A NDST4 Missense_Mutation p.P472S 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A824-06 4 1164311 1164311 C T SPON2 Silent p.L230L 0.31 TCGA-W3-A824-06 4 119948257 119948257 C T SYNPO2 Missense_Mutation p.P245S 0.37 tolerated(0.05) benign(0.077) TCGA-W3-A824-06 4 122828490 122828490 G A TRPC3 Silent p.Y675Y 0.34 TCGA-W3-A824-06 4 123122188 123122188 C T KIAA1109 Nonsense_Mutation p.R469* 0.26 TCGA-W3-A824-06 4 126329851 126329851 C T FAT4 Missense_Mutation p.P1941L 0.34 possibly_damaging(0.489) TCGA-W3-A824-06 4 126372473 126372473 C T FAT4 Silent p.I3434I 0.41 TCGA-W3-A824-06 4 128722302 128722302 T - HSPA4L Frame_Shift_Del p.F148Lfs*9 0.30 TCGA-W3-A824-06 4 13338412 13338412 G A HSP90AB2P RNA 0.44 TCGA-W3-A824-06 4 138449711 138449711 C A PCDH18 Missense_Mutation p.L887F 0.36 tolerated(0.09) possibly_damaging(0.459) TCGA-W3-A824-06 4 148579083 148579083 A G PRMT10 Missense_Mutation p.I397T 0.07 tolerated(0.08) benign(0.002) TCGA-W3-A824-06 4 148786038 148786038 A G ARHGAP10 Silent p.E176E 0.38 TCGA-W3-A824-06 4 151504382 151504382 G T MAB21L2 Missense_Mutation p.E67D 0.20 tolerated(0.58) benign(0.008) TCGA-W3-A824-06 4 152204295 152204295 G A PRSS48 Missense_Mutation p.E170K 0.33 deleterious(0.03) probably_damaging(0.994) TCGA-W3-A824-06 4 155155684 155155684 G A DCHS2 3'UTR 0.40 TCGA-W3-A824-06 4 155465598 155465598 C A PLRG1 Missense_Mutation p.R198M 0.20 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 4 15835913 15835913 G A CD38 Silent p.T191T 0.36 TCGA-W3-A824-06 4 159573186 159573186 G A RXFP1 Silent p.T751T 0.27 TCGA-W3-A824-06 4 164271506 164271506 C T NPY5R Silent p.F27F 0.38 TCGA-W3-A824-06 4 164534621 164534621 A T MARCH1 Intron 0.38 TCGA-W3-A824-06 4 166388922 166388922 G A CPE Missense_Mutation p.R196K 0.45 tolerated(0.07) benign(0.033) TCGA-W3-A824-06 4 166996050 166996050 G A TLL1 Missense_Mutation p.D737N 0.29 tolerated(0.6) benign(0.008) TCGA-W3-A824-06 4 167012462 167012462 A G TLL1 Silent p.Q875Q 0.35 TCGA-W3-A824-06 4 16760863 16760863 C T LDB2 Nonsense_Mutation p.W51* 0.41 TCGA-W3-A824-06 4 169279256 169279256 G A DDX60L 3'UTR 0.42 TCGA-W3-A824-06 4 170988495 170988495 G A AADAT Silent p.F315F 0.30 TCGA-W3-A824-06 4 173730563 173730563 G A GALNTL6 Missense_Mutation p.R202K 0.32 tolerated(0.65) benign(0.068) TCGA-W3-A824-06 4 173730564 173730564 G A GALNTL6 Silent p.R202R 0.33 TCGA-W3-A824-06 4 183609395 183609395 C T TENM3 Silent p.G704G 0.43 TCGA-W3-A824-06 4 186299204 186299204 C T LRP2BP Intron 0.31 TCGA-W3-A824-06 4 187530353 187530353 A G FAT1 Missense_Mutation p.L3397P 0.42 benign(0.007) TCGA-W3-A824-06 4 187557339 187557339 G A FAT1 Silent p.L1341L 0.34 TCGA-W3-A824-06 4 189012979 189012979 C T TRIML2 Missense_Mutation p.D238N 0.33 deleterious(0.02) possibly_damaging(0.452) TCGA-W3-A824-06 4 2065506 2065506 C T NAT8L Silent p.A187A 0.37 TCGA-W3-A824-06 4 2087379 2087379 C T POLN Missense_Mutation p.D720N 0.30 deleterious(0.03) possibly_damaging(0.836) TCGA-W3-A824-06 4 2087380 2087380 C T POLN Silent p.K719K 0.30 TCGA-W3-A824-06 4 2210177 2210177 G A POLN Missense_Mutation p.S84F 0.38 deleterious(0) possibly_damaging(0.906) TCGA-W3-A824-06 4 25674731 25674731 C T SLC34A2 Silent p.F357F 0.47 TCGA-W3-A824-06 4 26483700 26483700 G A CCKAR Missense_Mutation p.R283W 0.42 deleterious(0.01) possibly_damaging(0.67) TCGA-W3-A824-06 4 2951960 2951960 C A NOP14 Intron 0.43 TCGA-W3-A824-06 4 2951961 2951961 A C NOP14 Intron 0.44 TCGA-W3-A824-06 4 3225828 3225828 C T HTT Missense_Mutation p.P2579S 0.31 probably_damaging(0.954) TCGA-W3-A824-06 4 38016141 38016141 C T TBC1D1 Silent p.I143I 0.39 TCGA-W3-A824-06 4 39435920 39435920 G A KLB Missense_Mutation p.E306K 0.33 tolerated(0.36) possibly_damaging(0.73) TCGA-W3-A824-06 4 41648871 41648871 C T LIMCH1 Silent p.S542S 0.35 TCGA-W3-A824-06 4 43032406 43032406 C T GRXCR1 Missense_Mutation p.S241F 0.42 tolerated(0.79) benign(0.003) TCGA-W3-A824-06 4 4422615 4422615 C T STX18 Silent p.K296K 0.28 TCGA-W3-A824-06 4 46060339 46060339 C T GABRG1 Missense_Mutation p.G271R 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 4 46099357 46099357 C T GABRG1 Silent p.K38K 0.37 TCGA-W3-A824-06 4 47427888 47427888 G A GABRB1 Silent p.K426K 0.39 TCGA-W3-A824-06 4 47746506 47746506 G A CORIN Missense_Mutation p.L238F 0.43 deleterious(0.03) benign(0.424) TCGA-W3-A824-06 4 49063937 49063937 G A CWH43 3'UTR 0.40 TCGA-W3-A824-06 4 53339 53339 G A ZNF595 5'UTR 0.05 TCGA-W3-A824-06 4 53340 53340 G A ZNF595 5'UTR 0.06 TCGA-W3-A824-06 4 5642451 5642451 G A EVC2 Silent p.L420L 0.38 TCGA-W3-A824-06 4 57797532 57797532 C T REST Silent p.V836V 0.40 TCGA-W3-A824-06 4 6080687 6080687 C T JAKMIP1 Silent p.G427G 0.21 TCGA-W3-A824-06 4 68795726 68795726 A G TMPRSS11A Missense_Mutation p.I121T 0.38 deleterious(0.01) benign(0.392) TCGA-W3-A824-06 4 69962308 69962308 G A UGT2B7 Missense_Mutation p.G24R 0.38 deleterious(0) probably_damaging(0.985) TCGA-W3-A824-06 4 70346364 70346364 C T UGT2B4 Silent p.G525G 0.28 TCGA-W3-A824-06 4 71255542 71255542 C T SMR3B Missense_Mutation p.P73S 0.40 unknown(0) TCGA-W3-A824-06 4 71275774 71275774 C T PROL1 Silent p.L243L 0.25 TCGA-W3-A824-06 4 71500262 71500262 G A ENAM Missense_Mutation p.E150K 0.34 tolerated(0.61) benign(0) TCGA-W3-A824-06 4 76928572 76928572 C T CXCL9 Missense_Mutation p.G11S 0.36 tolerated(0.63) benign(0.052) TCGA-W3-A824-06 4 79507437 79507437 C T ANXA3 Silent p.A112A 0.37 TCGA-W3-A824-06 4 80328537 80328537 C T GK2 Missense_Mutation p.G273E 0.41 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 4 81122501 81122501 C A PRDM8 Missense_Mutation p.Q93K 0.37 deleterious(0) possibly_damaging(0.693) TCGA-W3-A824-06 4 8218864 8218864 C T SH3TC1 Missense_Mutation p.A270V 0.46 tolerated(0.24) benign(0.057) TCGA-W3-A824-06 4 8218865 8218865 C T SH3TC1 Silent p.A270A 0.46 TCGA-W3-A824-06 4 8588889 8588889 C T GPR78 Silent p.L297L 0.38 TCGA-W3-A824-06 4 87754541 87754541 C T SLC10A6 Silent p.L138L 0.26 TCGA-W3-A824-06 4 91230109 91230109 G A CCSER1 Missense_Mutation p.R225K 0.25 tolerated(1) benign(0.276) TCGA-W3-A824-06 4 93511364 93511364 C T GRID2 Silent p.I57I 0.33 TCGA-W3-A824-06 4 94343966 94343966 G A GRID2 Silent p.P464P 0.24 TCGA-W3-A824-06 4 94376826 94376826 G A GRID2 Missense_Mutation p.G520E 0.32 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 4 956341 956341 G A DGKQ Missense_Mutation p.S699F 0.29 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 4 98902346 98902346 G A STPG2 Nonsense_Mutation p.R246* 0.33 TCGA-W3-A824-06 5 101592950 101592950 G A SLCO4C1 Silent p.F446F 0.48 TCGA-W3-A824-06 5 101735359 101735359 C T SLCO6A1 Missense_Mutation p.D572N 0.30 tolerated(0.41) benign(0.216) TCGA-W3-A824-06 5 110782473 110782473 C T CAMK4 Silent p.I183I 0.38 TCGA-W3-A824-06 5 112174621 112174621 A G APC Silent p.S1110S 0.08 TCGA-W3-A824-06 5 11346708 11346708 G A CTNND2 Silent p.P468P 0.45 TCGA-W3-A824-06 5 114956376 114956380 ACCTG - TMED7-TICAM2 Splice_Site p.X65_splice 0.18 TCGA-W3-A824-06 5 115202397 115202397 G A AP3S1 Missense_Mutation p.E34K 0.37 tolerated(0.19) benign(0.175) TCGA-W3-A824-06 5 118580079 118580079 C T DMXL1 Silent p.A2889A 0.22 TCGA-W3-A824-06 5 120021694 120021694 G A PRR16 Missense_Mutation p.D46N 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-A824-06 5 121487936 121487936 C T ZNF474 Missense_Mutation p.P84L 0.32 tolerated(0.21) benign(0.086) TCGA-W3-A824-06 5 121786702 121786702 G A SNCAIP Missense_Mutation p.M720I 0.33 tolerated(0.05) probably_damaging(0.968) TCGA-W3-A824-06 5 124080753 124080753 C T ZNF608 5'UTR 0.38 TCGA-W3-A824-06 5 128797392 128797392 G A ADAMTS19 Missense_Mutation p.G224E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 5 128994386 128994386 C T ADAMTS19 Missense_Mutation p.S788L 0.49 deleterious(0.01) benign(0.1) TCGA-W3-A824-06 5 129521174 129521174 A T CHSY3 Missense_Mutation p.Y780F 0.22 tolerated(1) benign(0.019) TCGA-W3-A824-06 5 131396477 131396477 G A IL3 Silent p.T26T 0.45 TCGA-W3-A824-06 5 131398405 131398405 G A IL3 Missense_Mutation p.R127Q 0.35 tolerated(0.62) benign(0.425) TCGA-W3-A824-06 5 131398406 131398406 G A IL3 Silent p.R127R 0.35 TCGA-W3-A824-06 5 131602224 131602224 G A PDLIM4 Missense_Mutation p.D105N 0.48 deleterious(0.04) benign(0.349) TCGA-W3-A824-06 5 132272818 132272818 G A AFF4 Nonsense_Mutation p.Q22* 0.40 TCGA-W3-A824-06 5 134785536 134785536 C T TIFAB Missense_Mutation p.D32N 0.29 tolerated(0.09) benign(0.041) TCGA-W3-A824-06 5 135692683 135692683 G A TRPC7 Silent p.F131F 0.38 TCGA-W3-A824-06 5 13717498 13717498 C T DNAH5 Missense_Mutation p.E4211K 0.21 possibly_damaging(0.635) TCGA-W3-A824-06 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.39 possibly_damaging(0.898) TCGA-W3-A824-06 5 13769721 13769721 C T DNAH5 Missense_Mutation p.M3203I 0.40 benign(0.072) TCGA-W3-A824-06 5 137781496 137781496 G A REEP2 3'UTR 0.54 TCGA-W3-A824-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.37 probably_damaging(0.931) TCGA-W3-A824-06 5 13900333 13900333 C T DNAH5 Silent p.R747R 0.28 TCGA-W3-A824-06 5 13931332 13931332 C T DNAH5 Missense_Mutation p.E27K 0.30 benign(0.292) TCGA-W3-A824-06 5 13931341 13931341 C T DNAH5 Missense_Mutation p.G24R 0.31 benign(0) TCGA-W3-A824-06 5 140177030 140177030 C T PCDHA2 Intron 0.34 TCGA-W3-A824-06 5 140180953 140180953 G A PCDHA3 Silent p.A57A 0.38 TCGA-W3-A824-06 5 140188372 140188372 C T PCDHA4 Nonsense_Mutation p.Q534* 0.35 TCGA-W3-A824-06 5 140242276 140242276 C T AC005609.1 3'UTR 0.26 TCGA-W3-A824-06 5 140257250 140257250 G C PCDHA12 Silent p.R731R 0.28 TCGA-W3-A824-06 5 140261965 140261965 G A PCDHA13 Missense_Mutation p.E38K 0.40 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-W3-A824-06 5 140262294 140262294 T A PCDHA13 Silent p.P147P 0.42 TCGA-W3-A824-06 5 140263503 140263503 G A PCDHA13 Silent p.T550T 0.38 TCGA-W3-A824-06 5 140480435 140480435 T A PCDHB3 Missense_Mutation p.S68T 0.38 tolerated_low_confidence(0.09) benign(0.311) TCGA-W3-A824-06 5 140537261 140537261 C T PCDHB17 Missense_Mutation p.S562L 0.33 tolerated_low_confidence(0.13) benign(0.018) TCGA-W3-A824-06 5 140552969 140552970 - GCGGGG PCDHB7 In_Frame_Ins p.G186_E187insGG 0.29 TCGA-W3-A824-06 5 140557955 140557955 C T PCDHB8 Missense_Mutation p.P114S 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-A824-06 5 140558812 140558812 G A PCDHB8 Silent p.G399G 0.32 TCGA-W3-A824-06 5 140558982 140558982 C T PCDHB8 Missense_Mutation p.S456F 0.38 deleterious_low_confidence(0.01) benign(0.015) TCGA-W3-A824-06 5 140579977 140579977 C T PCDHB11 Silent p.F210F 0.34 TCGA-W3-A824-06 5 140698711 140698711 G A TAF7 Nonsense_Mutation p.R301* 0.36 TCGA-W3-A824-06 5 140744110 140744110 G A PCDHGA5 Silent p.R71R 0.39 TCGA-W3-A824-06 5 140772815 140772815 C T PCDHGA8 Silent p.I145I 0.40 TCGA-W3-A824-06 5 141334760 141334760 G T PCDH12 Missense_Mutation p.P886H 0.30 deleterious(0) possibly_damaging(0.866) TCGA-W3-A824-06 5 145246183 145246183 C T GRXCR2 Missense_Mutation p.E149K 0.41 tolerated(0.16) benign(0.073) TCGA-W3-A824-06 5 145890217 145890217 C T TCERG1 3'UTR 0.19 TCGA-W3-A824-06 5 147900508 147900508 C T HTR4 Intron 0.37 TCGA-W3-A824-06 5 148627414 148627414 C T ABLIM3 Missense_Mutation p.P541S 0.28 tolerated(0.22) benign(0.284) TCGA-W3-A824-06 5 149433603 149433603 G A CSF1R 3'UTR 0.42 TCGA-W3-A824-06 5 149576666 149576666 C T SLC6A7 Silent p.I137I 0.42 TCGA-W3-A824-06 5 150075204 150075204 C T RBM22 Missense_Mutation p.G204R 0.46 deleterious(0) probably_damaging(0.974) TCGA-W3-A824-06 5 150718628 150718628 A G SLC36A2 Missense_Mutation p.L173S 0.34 deleterious(0.03) probably_damaging(0.962) TCGA-W3-A824-06 5 151043787 151043787 G A SPARC Silent p.S248S 0.27 TCGA-W3-A824-06 5 153056646 153056646 G A GRIA1 Silent p.G328G 0.30 TCGA-W3-A824-06 5 153433203 153433203 C T MFAP3 Missense_Mutation p.P340L 0.36 deleterious(0.01) benign(0.004) TCGA-W3-A824-06 5 156349168 156349168 G A TIMD4 Silent p.I318I 0.28 TCGA-W3-A824-06 5 156890163 156890163 C T NIPAL4 Silent p.L95L 0.39 TCGA-W3-A824-06 5 156926623 156926623 C T ADAM19 Silent p.P452P 0.32 TCGA-W3-A824-06 5 159344491 159344491 G A ADRA1B Silent p.K193K 0.33 TCGA-W3-A824-06 5 159659116 159659116 G A FABP6 Missense_Mutation p.D76N 0.33 tolerated(0.2) benign(0.04) TCGA-W3-A824-06 5 16177870 16177870 G A MARCH11 Missense_Mutation p.H220Y 0.28 deleterious(0.04) possibly_damaging(0.579) TCGA-W3-A824-06 5 167645417 167645417 C T TENM2 Silent p.N1507N 0.40 TCGA-W3-A824-06 5 168112746 168112746 G A SLIT3 Silent p.S1167S 0.50 TCGA-W3-A824-06 5 169468112 169468112 C T DOCK2 Missense_Mutation p.A1240V 0.36 deleterious(0) probably_damaging(0.982) TCGA-W3-A824-06 5 175306965 175306965 G A CPLX2 Missense_Mutation p.E108K 0.32 tolerated(0.05) benign(0.014) TCGA-W3-A824-06 5 175717026 175717026 A G SIMC1 Intron 0.43 TCGA-W3-A824-06 5 175795845 175795845 G A ARL10 Missense_Mutation p.E141K 0.32 tolerated(0.24) probably_damaging(0.998) TCGA-W3-A824-06 5 176301557 176301557 C T UNC5A Silent p.I456I 0.31 TCGA-W3-A824-06 5 176797659 176797659 C T RGS14 Missense_Mutation p.T374I 0.30 tolerated(0.05) possibly_damaging(0.638) TCGA-W3-A824-06 5 177059094 177059094 G A RP11-1277A3.2 Intron 0.50 TCGA-W3-A824-06 5 178413621 178413621 C T GRM6 Missense_Mutation p.G545E 0.16 tolerated(0.18) possibly_damaging(0.53) TCGA-W3-A824-06 5 179320241 179320241 G A TBC1D9B Silent p.I268I 0.31 TCGA-W3-A824-06 5 22142588 22142588 C T CDH12 Intron 0.35 TCGA-W3-A824-06 5 34937696 34937696 C T DNAJC21 Missense_Mutation p.A235V 0.13 tolerated(0.31) benign(0.008) TCGA-W3-A824-06 5 34937697 34937697 C T DNAJC21 Silent p.A235A 0.13 TCGA-W3-A824-06 5 35806880 35806880 G A SPEF2 Silent p.R1694R 0.44 TCGA-W3-A824-06 5 35876664 35876664 C T IL7R 3'UTR 0.45 TCGA-W3-A824-06 5 37046271 37046271 G A NIPBL Missense_Mutation p.E2187K 0.25 deleterious(0.01) possibly_damaging(0.843) TCGA-W3-A824-06 5 37059103 37059108 AGATTC - NIPBL In_Frame_Del p.D2514_S2515del 0.08 TCGA-W3-A824-06 5 39201999 39201999 G A FYB Missense_Mutation p.P365L 0.30 deleterious(0.02) benign(0.113) TCGA-W3-A824-06 5 39376179 39376179 A G DAB2 Missense_Mutation p.S723P 0.38 tolerated(0.07) benign(0.053) TCGA-W3-A824-06 5 40964862 40964862 C T C7 Missense_Mutation p.P590L 0.37 tolerated(0.37) benign(0.405) TCGA-W3-A824-06 5 43280754 43280754 A T NIM1K Nonsense_Mutation p.K412* 0.35 TCGA-W3-A824-06 5 480094 480094 C T SLC9A3 Intron 0.38 TCGA-W3-A824-06 5 49695062 49695062 G A EMB 3'UTR 0.32 TCGA-W3-A824-06 5 50687118 50687118 G A ISL1 Missense_Mutation p.G259E 0.24 deleterious(0) possibly_damaging(0.901) TCGA-W3-A824-06 5 53751494 53751494 G - HSPB3 5'UTR 0.38 TCGA-W3-A824-06 5 55110814 55110814 G A DDX4 Missense_Mutation p.A601T 0.40 deleterious(0) probably_damaging(0.946) TCGA-W3-A824-06 5 60982840 60982840 C G C5orf64 Silent p.T56T 0.42 TCGA-W3-A824-06 5 63256290 63256290 G A HTR1A Silent p.F419F 0.29 TCGA-W3-A824-06 5 639233 639233 C T CEP72 Silent p.P412P 0.36 TCGA-W3-A824-06 5 66460781 66460781 C A MAST4 Missense_Mutation p.S1925Y 0.43 benign(0.246) TCGA-W3-A824-06 5 75913375 75913375 G A F2RL2 3'UTR 0.28 TCGA-W3-A824-06 5 75948585 75948585 A T IQGAP2 Missense_Mutation p.K702I 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-W3-A824-06 5 76028897 76028897 C T F2R Silent p.L283L 0.25 TCGA-W3-A824-06 5 76173677 76173677 C T S100Z Intron 0.45 TCGA-W3-A824-06 5 78359490 78359490 T A DMGDH Missense_Mutation p.K74N 0.31 tolerated(0.09) possibly_damaging(0.892) TCGA-W3-A824-06 5 78417135 78417135 G A BHMT Missense_Mutation p.G191E 0.33 tolerated(0.07) possibly_damaging(0.755) TCGA-W3-A824-06 5 79027020 79027020 C T CMYA5 Missense_Mutation p.S811F 0.35 benign(0.07) TCGA-W3-A824-06 5 79854330 79854330 C T ANKRD34B Silent p.L503L 0.36 TCGA-W3-A824-06 5 82789694 82789694 G A VCAN Missense_Mutation p.G231E 0.32 deleterious(0) probably_damaging(0.913) TCGA-W3-A824-06 5 86679568 86679568 T G RASA1 Missense_Mutation p.L910R 0.45 deleterious(0) possibly_damaging(0.823) TCGA-W3-A824-06 6 102250214 102250214 G A GRIK2 Nonsense_Mutation p.W368* 0.34 TCGA-W3-A824-06 6 105233188 105233188 C T HACE1 Missense_Mutation p.E361K 0.37 deleterious(0.04) possibly_damaging(0.877) TCGA-W3-A824-06 6 10874463 10874463 G A GCM2 Missense_Mutation p.P429L 0.38 tolerated_low_confidence(0.1) benign(0) TCGA-W3-A824-06 6 116949069 116949069 A T RSPH4A Missense_Mutation p.E400V 0.46 deleterious(0.02) probably_damaging(0.954) TCGA-W3-A824-06 6 117248448 117248448 C T RFX6 Missense_Mutation p.S715L 0.38 deleterious_low_confidence(0.03) benign(0.097) TCGA-W3-A824-06 6 117629996 117629996 C T ROS1 Missense_Mutation p.G2177E 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 6 117674321 117674321 G A ROS1 Missense_Mutation p.L1385F 0.39 tolerated(0.2) benign(0.009) TCGA-W3-A824-06 6 119345829 119345829 G A FAM184A Silent p.D103D 0.30 TCGA-W3-A824-06 6 128150684 128150684 G A THEMIS Missense_Mutation p.P216S 0.34 deleterious(0) probably_damaging(0.963) TCGA-W3-A824-06 6 128306921 128306921 G A PTPRK Missense_Mutation p.R1072W 0.38 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 6 129498890 129498890 G A LAMA2 Missense_Mutation p.G449E 0.45 tolerated(0.13) benign(0.038) TCGA-W3-A824-06 6 130762786 130762786 C T TMEM200A Silent p.L407L 0.31 TCGA-W3-A824-06 6 132189251 132189251 C T ENPP1 Missense_Mutation p.L420F 0.49 tolerated(0.28) benign(0.261) TCGA-W3-A824-06 6 132694090 132694090 C T MOXD1 Missense_Mutation p.G153E 0.42 tolerated(0.06) benign(0.023) TCGA-W3-A824-06 6 134349583 134349584 - A SLC2A12 Frame_Shift_Ins p.L460Ffs*46 0.19 TCGA-W3-A824-06 6 136589374 136589374 C T BCLAF1 Missense_Mutation p.E775K 0.12 tolerated(0.07) possibly_damaging(0.486) TCGA-W3-A824-06 6 136710583 136710583 C T MAP7 Missense_Mutation p.R128Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-W3-A824-06 6 139197666 139197666 G A ECT2L Missense_Mutation p.D546N 0.45 tolerated(0.37) benign(0.004) TCGA-W3-A824-06 6 146755530 146755530 G A GRM1 Silent p.G1061G 0.30 TCGA-W3-A824-06 6 150147410 150147410 G A LRP11 Silent p.A446A 0.34 TCGA-W3-A824-06 6 151894591 151894591 C T CCDC170 Nonsense_Mutation p.R353* 0.22 TCGA-W3-A824-06 6 152772295 152772295 C T SYNE1 Missense_Mutation p.D1025N 0.37 benign(0.038) TCGA-W3-A824-06 6 158327164 158327164 C T SNX9 Missense_Mutation p.P209S 0.30 tolerated(1) probably_damaging(0.999) TCGA-W3-A824-06 6 160328347 160328347 C T MAS1 Silent p.L120L 0.41 TCGA-W3-A824-06 6 160670247 160670247 C T SLC22A2 Splice_Site p.X281_splice 0.21 TCGA-W3-A824-06 6 160670248 160670248 C T SLC22A2 Nonsense_Mutation p.W281* 0.23 TCGA-W3-A824-06 6 160829813 160829813 G A SLC22A3 Silent p.R239R 0.30 TCGA-W3-A824-06 6 160999566 160999566 G A LPA Missense_Mutation p.P1487L 0.30 deleterious_low_confidence(0.01) benign(0.16) TCGA-W3-A824-06 6 17541246 17541246 C T CAP2 Missense_Mutation p.P290L 0.37 deleterious(0) benign(0.248) TCGA-W3-A824-06 6 20486972 20486972 C T E2F3 Nonsense_Mutation p.Q313* 0.30 TCGA-W3-A824-06 6 22294745 22294745 G A PRL Missense_Mutation p.P33S 0.48 tolerated(0.17) benign(0.11) TCGA-W3-A824-06 6 24423946 24423946 T - MRS2 3'UTR 0.35 TCGA-W3-A824-06 6 24596525 24596525 G A KIAA0319 Missense_Mutation p.P126L 0.41 deleterious(0) possibly_damaging(0.642) TCGA-W3-A824-06 6 24780940 24780940 C T GMNN Missense_Mutation p.S34F 0.25 deleterious(0) benign(0.329) TCGA-W3-A824-06 6 25581658 25581658 C T LRRC16A Silent p.T999T 0.50 TCGA-W3-A824-06 6 26156808 26156808 A G HIST1H1E Missense_Mutation p.K64E 0.30 deleterious(0) probably_damaging(0.928) TCGA-W3-A824-06 6 26388275 26388275 C T BTN2A2 Silent p.A159A 0.36 TCGA-W3-A824-06 6 27219004 27219004 C T PRSS16 Silent p.S226S 0.25 TCGA-W3-A824-06 6 28227822 28227822 G A NKAPL Missense_Mutation p.A225T 0.32 tolerated(0.08) unknown(0) TCGA-W3-A824-06 6 28543161 28543161 C T SCAND3 Missense_Mutation p.E441K 0.40 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-W3-A824-06 6 29342533 29342533 C T OR12D3 Missense_Mutation p.D178N 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 6 2953340 2953340 C A SERPINB6 Nonsense_Mutation p.G171* 0.38 TCGA-W3-A824-06 6 30114816 30114816 C T TRIM40 Intron 0.29 TCGA-W3-A824-06 6 30711890 30711890 G A IER3 Silent p.I98I 0.31 TCGA-W3-A824-06 6 30863253 30863253 C T DDR1 Missense_Mutation p.P529L 0.39 tolerated(0.72) benign(0.002) TCGA-W3-A824-06 6 31083939 31083939 G A CDSN Missense_Mutation p.P485S 0.46 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-W3-A824-06 6 31323308 31323308 G T HLA-B Nonsense_Mutation p.C227* 0.33 TCGA-W3-A824-06 6 31778351 31778351 G A HSPA1L Missense_Mutation p.P467S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-W3-A824-06 6 31827392 31827392 G A NEU1 3'UTR 0.36 TCGA-W3-A824-06 6 31852221 31852221 G A EHMT2 Missense_Mutation p.L907F 0.45 deleterious(0.01) benign(0.332) TCGA-W3-A824-06 6 32036454 32036454 G A TNXB Missense_Mutation p.P1978L 0.38 possibly_damaging(0.699) TCGA-W3-A824-06 6 32038093 32038093 G A TNXB Missense_Mutation p.P1697S 0.27 probably_damaging(0.997) TCGA-W3-A824-06 6 32089055 32089055 G A ATF6B Silent p.A183A 0.27 TCGA-W3-A824-06 6 32170199 32170199 G A NOTCH4 Missense_Mutation p.P1137S 0.27 tolerated(0.54) probably_damaging(0.998) TCGA-W3-A824-06 6 32184757 32184757 C T NOTCH4 Missense_Mutation p.G609E 0.36 deleterious(0.02) probably_damaging(1) TCGA-W3-A824-06 6 32917577 32917577 G A HLA-DMA Missense_Mutation p.P155S 0.33 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 6 33384491 33384491 G A CUTA Missense_Mutation p.P178L 0.33 tolerated(0.08) probably_damaging(0.973) TCGA-W3-A824-06 6 3410547 3410547 G A SLC22A23 Missense_Mutation p.S263F 0.35 deleterious(0) probably_damaging(0.972) TCGA-W3-A824-06 6 36437887 36437887 C T KCTD20 Missense_Mutation p.R5C 0.30 deleterious_low_confidence(0.05) benign(0) TCGA-W3-A824-06 6 39159031 39159031 G A KCNK5 Missense_Mutation p.R379W 0.49 deleterious(0.01) benign(0.28) TCGA-W3-A824-06 6 39846221 39846221 G A DAAM2 Missense_Mutation p.E468K 0.55 deleterious(0) probably_damaging(0.977) TCGA-W3-A824-06 6 41557870 41557870 G A FOXP4 Missense_Mutation p.R440Q 0.11 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 6 42237011 42237011 C T TRERF1 Missense_Mutation p.M106I 0.40 deleterious_low_confidence(0.04) benign(0.241) TCGA-W3-A824-06 6 43172565 43172565 C T CUL9 Silent p.T1473T 0.39 TCGA-W3-A824-06 6 43221435 43221435 G A TTBK1 Missense_Mutation p.D154N 0.44 probably_damaging(1) TCGA-W3-A824-06 6 43748483 43748483 G A VEGFA Missense_Mutation p.G326E 0.38 tolerated_low_confidence(0.25) benign(0.155) TCGA-W3-A824-06 6 44119616 44119616 C T TMEM63B Silent p.F569F 0.37 TCGA-W3-A824-06 6 49666200 49666200 G A CRISP2 Missense_Mutation p.L98F 0.42 deleterious(0) probably_damaging(0.986) TCGA-W3-A824-06 6 52705583 52705583 G A GSTA5 Missense_Mutation p.S10F 0.40 tolerated(1) benign(0.001) TCGA-W3-A824-06 6 54254852 54254852 T C TINAG 3'UTR 0.31 TCGA-W3-A824-06 6 54735222 54735222 G A FAM83B Missense_Mutation p.E60K 0.34 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 6 54806728 54806728 C T FAM83B Missense_Mutation p.R987C 0.35 deleterious(0.01) possibly_damaging(0.513) TCGA-W3-A824-06 6 55923990 55923990 C T COL21A1 Missense_Mutation p.G887R 0.27 deleterious(0) benign(0.227) TCGA-W3-A824-06 6 56469172 56469172 G A DST Intron 0.36 TCGA-W3-A824-06 6 56918916 56918916 C T KIAA1586 Missense_Mutation p.S540L 0.47 deleterious(0.03) probably_damaging(0.994) TCGA-W3-A824-06 6 57467124 57467124 G A PRIM2 3'UTR 0.12 TCGA-W3-A824-06 6 63990433 63990433 C T LGSN Silent p.G341G 0.41 TCGA-W3-A824-06 6 70407459 70407459 A G LMBRD1 Silent p.P471P 0.05 TCGA-W3-A824-06 6 70897847 70897847 G A COL19A1 Missense_Mutation p.M975I 0.42 tolerated(0.41) benign(0.03) TCGA-W3-A824-06 6 73904933 73904933 G A KCNQ5 Silent p.R884R 0.48 TCGA-W3-A824-06 6 74171618 74171618 C T MTO1 Missense_Mutation p.S14F 0.38 tolerated_low_confidence(0.06) benign(0.015) TCGA-W3-A824-06 6 79679826 79679829 AGGC GGG PHIP Frame_Shift_Del p.C1020Sfs*7 0.25 TCGA-W3-A824-06 6 80631426 80631426 G A ELOVL4 Nonsense_Mutation p.Q153* 0.33 TCGA-W3-A824-06 6 84896273 84896273 T A KIAA1009 Missense_Mutation p.N393I 0.33 deleterious(0) possibly_damaging(0.812) TCGA-W3-A824-06 6 85446820 85446820 G A TBX18 Silent p.S469S 0.32 TCGA-W3-A824-06 6 87725277 87725277 C T HTR1E Silent p.V75V 0.42 TCGA-W3-A824-06 6 87725481 87725481 C T HTR1E Silent p.I143I 0.46 TCGA-W3-A824-06 6 88050071 88050071 C T SMIM8 3'UTR 0.55 TCGA-W3-A824-06 6 89790688 89790688 C T PNRC1 Silent p.S25S 0.23 TCGA-W3-A824-06 6 90009486 90009486 G A GABRR2 Missense_Mutation p.A71V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A824-06 6 90604314 90604314 G A GJA10 Missense_Mutation p.D43N 0.37 tolerated(0.05) possibly_damaging(0.718) TCGA-W3-A824-06 6 94120355 94120355 C T EPHA7 Silent p.G232G 0.35 TCGA-W3-A824-06 6 96651536 96651536 G A FUT9 Missense_Mutation p.G169S 0.29 tolerated(0.13) probably_damaging(0.95) TCGA-W3-A824-06 7 100371396 100371396 C T ZAN Missense_Mutation p.S1896F 0.50 unknown(0) TCGA-W3-A824-06 7 100682926 100682926 C T MUC17 Silent p.I2743I 0.28 TCGA-W3-A824-06 7 100683346 100683346 T C MUC17 Silent p.S2883S 0.36 TCGA-W3-A824-06 7 104747894 104747894 C T KMT2E Missense_Mutation p.T997I 0.28 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-W3-A824-06 7 106522573 106522573 C T PIK3CG Silent p.I850I 0.30 TCGA-W3-A824-06 7 106836581 106836581 C T HBP1 Missense_Mutation p.P457L 0.18 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 7 107848059 107848059 G A NRCAM Missense_Mutation p.P374S 0.44 deleterious(0.02) probably_damaging(0.99) TCGA-W3-A824-06 7 112102074 112102074 G A IFRD1 Missense_Mutation p.E213K 0.35 tolerated(0.67) benign(0.43) TCGA-W3-A824-06 7 112125000 112125000 T C LSMEM1 Splice_Site p.X43_splice 0.33 TCGA-W3-A824-06 7 115596807 115596807 C T TFEC Missense_Mutation p.G103E 0.38 tolerated(0.07) benign(0.03) TCGA-W3-A824-06 7 117407167 117407167 G A CTTNBP2 Missense_Mutation p.R948W 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 7 117424467 117424467 G A CTTNBP2 Missense_Mutation p.P704S 0.07 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 7 119914559 119914559 G A KCND2 5'UTR 0.38 TCGA-W3-A824-06 7 119915064 119915064 G A KCND2 Silent p.P126P 0.39 TCGA-W3-A824-06 7 119915482 119915482 G A KCND2 Missense_Mutation p.D266N 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 7 121756779 121756779 G A AASS Missense_Mutation p.H268Y 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-W3-A824-06 7 123269488 123269488 G A ASB15 Silent p.P480P 0.44 TCGA-W3-A824-06 7 123336755 123336755 G A WASL Silent p.I169I 0.39 TCGA-W3-A824-06 7 123593854 123593854 G A SPAM1 Missense_Mutation p.G77E 0.35 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 7 128445939 128445939 C T CCDC136 Missense_Mutation p.S358F 0.34 deleterious(0) probably_damaging(0.956) TCGA-W3-A824-06 7 132069885 132069885 C T PLXNA4 Intron 0.54 TCGA-W3-A824-06 7 134217775 134217775 C T AKR1B10 Missense_Mutation p.P124L 0.34 deleterious(0) possibly_damaging(0.731) TCGA-W3-A824-06 7 134849203 134849203 C T TMEM140 Missense_Mutation p.P4S 0.37 tolerated(0.34) benign(0.016) TCGA-W3-A824-06 7 136699718 136699718 G A CHRM2 Missense_Mutation p.V36M 0.42 deleterious(0.02) probably_damaging(0.957) TCGA-W3-A824-06 7 140221793 140221793 C T DENND2A Missense_Mutation p.E925K 0.38 deleterious(0) possibly_damaging(0.811) TCGA-W3-A824-06 7 141429370 141429370 A T WEE2 Silent p.G525G 0.09 TCGA-W3-A824-06 7 141619088 141619088 G A OR9A4 Missense_Mutation p.R138K 0.34 tolerated(0.23) benign(0.012) TCGA-W3-A824-06 7 141755885 141755885 G A MGAM Missense_Mutation p.S1190N 0.33 deleterious(0) probably_damaging(0.935) TCGA-W3-A824-06 7 142045349 142045349 G A TRBV4-2 5'UTR 0.14 TCGA-W3-A824-06 7 142104226 142104226 G A TRBV6-9 Missense_Mutation p.P80L 0.37 deleterious(0.02) benign(0.141) TCGA-W3-A824-06 7 142181017 142181017 A T TRBV6-5 5'Flank 0.37 TCGA-W3-A824-06 7 142651410 142651410 C T KEL Missense_Mutation p.G262E 0.30 deleterious(0.02) probably_damaging(0.943) TCGA-W3-A824-06 7 142658959 142658959 C T KEL Missense_Mutation p.E2K 0.37 deleterious_low_confidence(0) benign(0.187) TCGA-W3-A824-06 7 142723443 142723443 C T OR9A2 Silent p.K259K 0.40 TCGA-W3-A824-06 7 142723575 142723575 G A OR9A2 Silent p.T215T 0.37 TCGA-W3-A824-06 7 142723582 142723582 G A OR9A2 Missense_Mutation p.S213F 0.35 deleterious(0) probably_damaging(0.99) TCGA-W3-A824-06 7 142836788 142836788 G A PIP 3'UTR 0.43 TCGA-W3-A824-06 7 143047727 143047727 G A CLCN1 Missense_Mutation p.G859S 0.40 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 7 143048896 143048896 C T CLCN1 Silent p.S935S 0.32 TCGA-W3-A824-06 7 143048897 143048897 C T CLCN1 Missense_Mutation p.P936S 0.31 tolerated_low_confidence(0.13) benign(0.004) TCGA-W3-A824-06 7 143701907 143701907 C T OR6B1 Missense_Mutation p.S273F 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 7 143792561 143792561 C T OR2A12 Missense_Mutation p.R121W 0.38 deleterious(0.03) possibly_damaging(0.543) TCGA-W3-A824-06 7 14661008 14661008 G C DGKB Missense_Mutation p.L428V 0.29 tolerated(0.08) benign(0.08) TCGA-W3-A824-06 7 149986630 149986632 CTA - ACTR3C In_Frame_Del p.R69del 0.27 TCGA-W3-A824-06 7 150171727 150171727 G A GIMAP8 Splice_Site p.X437_splice 0.45 TCGA-W3-A824-06 7 150553592 150553592 C T AOC1 Silent p.L12L 0.38 TCGA-W3-A824-06 7 151818809 151818809 G A GALNT11 3'UTR 0.27 TCGA-W3-A824-06 7 154002589 154002589 G A DPP6 Intron 0.17 TCGA-W3-A824-06 7 157959842 157959842 G A PTPRN2 Missense_Mutation p.P231S 0.27 tolerated(0.06) benign(0.321) TCGA-W3-A824-06 7 1579986 1579986 C T MAFK Missense_Mutation p.S149F 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-W3-A824-06 7 1579987 1579987 C G MAFK Silent p.S149S 0.28 TCGA-W3-A824-06 7 158109613 158109613 C T PTPRN2 Missense_Mutation p.G59R 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 7 20371497 20371497 C T ITGB8 Missense_Mutation p.P23L 0.43 tolerated_low_confidence(0.15) benign(0.334) TCGA-W3-A824-06 7 21726760 21726760 G A DNAH11 Missense_Mutation p.G1896R 0.19 probably_damaging(1) TCGA-W3-A824-06 7 21908512 21908512 G A DNAH11 Missense_Mutation p.G3964E 0.43 probably_damaging(0.939) TCGA-W3-A824-06 7 23872084 23872084 C T STK31 3'UTR 0.36 TCGA-W3-A824-06 7 2473564 2473564 C T CHST12 3'UTR 0.28 TCGA-W3-A824-06 7 2954871 2954871 C T CARD11 Missense_Mutation p.E947K 0.30 tolerated(0.54) benign(0.001) TCGA-W3-A824-06 7 2979403 2979403 C T CARD11 Missense_Mutation p.E282K 0.32 deleterious(0) possibly_damaging(0.777) TCGA-W3-A824-06 7 30701813 30701813 G A CRHR2 Silent p.I266I 0.47 TCGA-W3-A824-06 7 31864508 31864508 G T PDE1C Missense_Mutation p.T520N 0.34 deleterious(0.02) benign(0.219) TCGA-W3-A824-06 7 34192975 34192975 G A BMPER 3'UTR 0.33 TCGA-W3-A824-06 7 35289660 35289660 C T TBX20 Missense_Mutation p.E95K 0.29 tolerated(0.24) benign(0.299) TCGA-W3-A824-06 7 41739685 41739685 C T INHBA Silent p.G96G 0.38 TCGA-W3-A824-06 7 43503381 43503381 C T HECW1 Missense_Mutation p.S925F 0.35 tolerated(0.81) benign(0.013) TCGA-W3-A824-06 7 44040864 44040864 G A SPDYE1 Silent p.K80K 0.36 TCGA-W3-A824-06 7 44040865 44040865 G A SPDYE1 Missense_Mutation p.D81N 0.36 tolerated(0.19) benign(0.109) TCGA-W3-A824-06 7 44104747 44104747 C T PGAM2 Missense_Mutation p.E128K 0.33 tolerated(0.45) benign(0.003) TCGA-W3-A824-06 7 4780576 4780576 C T FOXK1 Missense_Mutation p.S223F 0.27 deleterious(0) possibly_damaging(0.887) TCGA-W3-A824-06 7 47944840 47944840 G A PKD1L1 Silent p.P535P 0.32 TCGA-W3-A824-06 7 47944841 47944841 G A PKD1L1 Missense_Mutation p.P535L 0.33 deleterious(0.04) benign(0.349) TCGA-W3-A824-06 7 48314637 48314637 G A ABCA13 Missense_Mutation p.A1792T 0.32 benign(0.015) TCGA-W3-A824-06 7 4901276 4901276 C T PAPOLB Missense_Mutation p.E55K 0.37 deleterious(0.05) probably_damaging(0.995) TCGA-W3-A824-06 7 53103849 53103849 G A POM121L12 Missense_Mutation p.G162D 0.35 tolerated(0.11) benign(0.008) TCGA-W3-A824-06 7 5416556 5416556 G A TNRC18 Missense_Mutation p.P844S 0.56 benign(0.338) TCGA-W3-A824-06 7 56022730 56022730 C T MRPS17 Silent p.I84I 0.44 TCGA-W3-A824-06 7 57528745 57528745 C T ZNF716 Missense_Mutation p.S193L 0.38 deleterious(0.05) probably_damaging(0.997) TCGA-W3-A824-06 7 6026931 6026931 C T PMS2 Missense_Mutation p.E489K 0.40 tolerated(0.24) benign(0.005) TCGA-W3-A824-06 7 6064287 6064287 A - EIF2AK1 3'UTR 0.21 TCGA-W3-A824-06 7 62752818 62752818 T A ZNF733P RNA 0.29 TCGA-W3-A824-06 7 63538679 63538679 C T ZNF727 Missense_Mutation p.H418Y 0.50 deleterious(0.03) possibly_damaging(0.844) TCGA-W3-A824-06 7 716951 716951 G A PRKAR1B Missense_Mutation p.P119S 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-W3-A824-06 7 73118065 73118065 G A STX1A Intron 0.32 TCGA-W3-A824-06 7 75614451 75614451 C - POR Frame_Shift_Del p.I444Sfs*101 0.30 TCGA-W3-A824-06 7 75695719 75695719 C A MDH2 Silent p.T336T 0.48 TCGA-W3-A824-06 7 76019439 76019439 G A SRCRB4D Silent p.I555I 0.38 TCGA-W3-A824-06 7 76828852 76828852 C T FGL2 Missense_Mutation p.E87K 0.43 deleterious(0.01) possibly_damaging(0.844) TCGA-W3-A824-06 7 76871183 76871183 G A CCDC146 Missense_Mutation p.E139K 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-W3-A824-06 7 82580365 82580365 G A PCLO Missense_Mutation p.S3180F 0.31 unknown(0) TCGA-W3-A824-06 7 82584164 82584164 G A PCLO Silent p.I2035I 0.38 TCGA-W3-A824-06 7 82763957 82763957 G A PCLO Missense_Mutation p.P970L 0.54 unknown(0) TCGA-W3-A824-06 7 82764784 82764784 G A PCLO Silent p.L694L 0.28 TCGA-W3-A824-06 7 84628659 84628659 C T SEMA3D 3'UTR 0.46 TCGA-W3-A824-06 7 87076455 87076455 G A ABCB4 Silent p.S300S 0.37 TCGA-W3-A824-06 7 87165785 87165785 G C ABCB1 Missense_Mutation p.Q824E 0.28 tolerated(0.09) benign(0.013) TCGA-W3-A824-06 7 927103 927103 G A GET4 Missense_Mutation p.G138E 0.41 tolerated(0.32) benign(0.043) TCGA-W3-A824-06 7 92765188 92765188 A G SAMD9L Missense_Mutation p.Y33H 0.35 tolerated(0.37) benign(0.109) TCGA-W3-A824-06 7 94540203 94540203 C T PPP1R9A Missense_Mutation p.P260S 0.32 tolerated(0.16) benign(0.121) TCGA-W3-A824-06 7 95820481 95820481 G A SLC25A13 Missense_Mutation p.L232F 0.38 deleterious(0) probably_damaging(0.962) TCGA-W3-A824-06 7 98457957 98457957 G A TMEM130 Silent p.F132F 0.44 TCGA-W3-A824-06 7 99145922 99145922 G A FAM200A Nonsense_Mutation p.Q37* 0.38 TCGA-W3-A824-06 7 99773906 99773906 G A GPC2 Silent p.A83A 0.38 TCGA-W3-A824-06 8 101541815 101541815 G A ANKRD46 Missense_Mutation p.H83Y 0.28 deleterious(0.05) benign(0.415) TCGA-W3-A824-06 8 102631830 102631830 C T GRHL2 Missense_Mutation p.P388S 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 8 103312277 103312277 G A UBR5 Silent p.P1019P 0.24 TCGA-W3-A824-06 8 103848500 103848500 G A AZIN1 Nonsense_Mutation p.Q190* 0.61 TCGA-W3-A824-06 8 10464989 10464989 G A RP1L1 Missense_Mutation p.P2207S 0.27 unknown(0) TCGA-W3-A824-06 8 10467686 10467686 C T RP1L1 Missense_Mutation p.E1308K 0.56 unknown(0) TCGA-W3-A824-06 8 106810990 106810990 C T ZFPM2 Missense_Mutation p.R260W 0.47 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 8 109796847 109796847 C T TMEM74 Missense_Mutation p.D161N 0.29 deleterious(0) possibly_damaging(0.906) TCGA-W3-A824-06 8 109796978 109796978 T - TMEM74 Frame_Shift_Del p.N117Tfs*39 0.29 TCGA-W3-A824-06 8 110455998 110455998 C T PKHD1L1 Missense_Mutation p.S1553L 0.56 tolerated(0.07) benign(0.002) TCGA-W3-A824-06 8 110487486 110487486 C T PKHD1L1 Silent p.F2915F 0.54 TCGA-W3-A824-06 8 110520039 110520039 A G PKHD1L1 Silent p.G3714G 0.31 TCGA-W3-A824-06 8 110523013 110523013 G A PKHD1L1 Silent p.Q3801Q 0.20 TCGA-W3-A824-06 8 113267620 113267620 C T CSMD3 Missense_Mutation p.G3300E 0.32 deleterious(0) possibly_damaging(0.544) TCGA-W3-A824-06 8 113585736 113585736 A G CSMD3 Missense_Mutation p.Y1346H 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-W3-A824-06 8 113966960 113966960 C A CSMD3 Missense_Mutation p.G458V 0.48 deleterious(0) probably_damaging(0.99) TCGA-W3-A824-06 8 113966961 113966961 C T CSMD3 Missense_Mutation p.G458R 0.47 deleterious(0) probably_damaging(0.99) TCGA-W3-A824-06 8 11400853 11400853 C T BLK Silent p.P40P 0.21 TCGA-W3-A824-06 8 11400854 11400854 C T BLK Silent p.L41L 0.22 TCGA-W3-A824-06 8 11412354 11412354 G A BLK Missense_Mutation p.R192Q 0.51 deleterious(0.02) benign(0.005) TCGA-W3-A824-06 8 116426809 116426809 T A TRPS1 Silent p.G1109G 0.33 TCGA-W3-A824-06 8 119452069 119452069 A C SAMD12 Splice_Site p.X108_splice 0.42 TCGA-W3-A824-06 8 119938772 119938772 G A TNFRSF11B Nonsense_Mutation p.Q260* 0.24 TCGA-W3-A824-06 8 120431480 120431480 C T NOV Silent p.F224F 0.52 TCGA-W3-A824-06 8 121220484 121220484 G A COL14A1 Missense_Mutation p.G402E 0.53 deleterious(0.04) possibly_damaging(0.895) TCGA-W3-A824-06 8 121298182 121298182 G A COL14A1 Silent p.R1350R 0.17 TCGA-W3-A824-06 8 125115544 125115544 A G FER1L6 Silent p.E1761E 0.27 TCGA-W3-A824-06 8 128428256 128428256 C T POU5F1B Missense_Mutation p.P49S 0.36 tolerated(0.13) benign(0.008) TCGA-W3-A824-06 8 128429098 128429098 C T POU5F1B Silent p.F329F 0.44 TCGA-W3-A824-06 8 130762254 130762254 G A GSDMC Missense_Mutation p.L399F 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-W3-A824-06 8 131896997 131896997 G A ADCY8 Missense_Mutation p.A641V 0.58 tolerated(0.19) possibly_damaging(0.675) TCGA-W3-A824-06 8 131964222 131964222 A T ADCY8 Missense_Mutation p.L378H 0.47 deleterious(0) probably_damaging(0.921) TCGA-W3-A824-06 8 135614707 135614707 G A ZFAT Missense_Mutation p.R419C 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 8 139164770 139164770 C A FAM135B Nonsense_Mutation p.E650* 0.30 TCGA-W3-A824-06 8 139838954 139838954 G A COL22A1 Missense_Mutation p.R306W 0.21 unknown(0) TCGA-W3-A824-06 8 14181616 14181616 C T SGCZ Missense_Mutation p.R111Q 0.60 deleterious(0) probably_damaging(0.928) TCGA-W3-A824-06 8 14181623 14181623 G A SGCZ Missense_Mutation p.H109Y 0.18 deleterious(0.04) benign(0.077) TCGA-W3-A824-06 8 142161849 142161849 C T DENND3 Silent p.I249I 0.36 TCGA-W3-A824-06 8 144351527 144351551 CAGGTCCCAGGTGTGACACCTTCAG - GLI4 Splice_Site 0.17 TCGA-W3-A824-06 8 144351579 144351579 G A GLI4 Missense_Mutation p.G5R 0.63 deleterious(0.01) possibly_damaging(0.638) TCGA-W3-A824-06 8 144378648 144378648 G A ZNF696 Missense_Mutation p.R268Q 0.21 tolerated(0.43) benign(0.282) TCGA-W3-A824-06 8 144776560 144776560 C T ZNF707 Missense_Mutation p.R326W 0.50 deleterious(0) probably_damaging(0.991) TCGA-W3-A824-06 8 144800435 144800435 G A MAPK15 Silent p.E83E 0.27 TCGA-W3-A824-06 8 144803972 144803972 G A MAPK15 Silent p.A460A 0.30 TCGA-W3-A824-06 8 145008895 145008895 G A PLEC Silent p.L454L 0.61 TCGA-W3-A824-06 8 145008896 145008896 G A PLEC Silent p.I453I 0.62 TCGA-W3-A824-06 8 145637900 145637900 G A SLC39A4 3'UTR 0.51 TCGA-W3-A824-06 8 145640396 145640396 G A SLC39A4 Missense_Mutation p.L256F 0.63 tolerated(0.6) possibly_damaging(0.555) TCGA-W3-A824-06 8 145640397 145640397 G A SLC39A4 Silent p.P255P 0.62 TCGA-W3-A824-06 8 145742090 145742090 G A RECQL4 Missense_Mutation p.S138F 0.60 deleterious(0) benign(0.06) TCGA-W3-A824-06 8 145947856 145947856 G A ZNF251 Missense_Mutation p.R397W 0.26 deleterious(0) probably_damaging(0.962) TCGA-W3-A824-06 8 15615353 15615353 C T TUSC3 3'UTR 0.52 TCGA-W3-A824-06 8 1905308 1905308 C T ARHGEF10 Missense_Mutation p.S1305L 0.26 deleterious(0) probably_damaging(0.961) TCGA-W3-A824-06 8 1950698 1950698 C T KBTBD11 Missense_Mutation p.A447V 0.33 deleterious(0) probably_damaging(0.99) TCGA-W3-A824-06 8 20110862 20110862 C T LZTS1 Missense_Mutation p.D194N 0.57 deleterious(0.05) probably_damaging(0.937) TCGA-W3-A824-06 8 22078839 22078839 C T PHYHIP 3'UTR 0.36 TCGA-W3-A824-06 8 22547958 22547958 G A EGR3 3'UTR 0.61 TCGA-W3-A824-06 8 23003204 23003204 G A TNFRSF10D Missense_Mutation p.S238F 0.27 tolerated(0.52) possibly_damaging(0.795) TCGA-W3-A824-06 8 24212020 24212020 C T ADAM28 3'UTR 0.29 TCGA-W3-A824-06 8 27098578 27098578 C T STMN4 Missense_Mutation p.R131Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 8 27293863 27293863 C T PTK2B Missense_Mutation p.H447Y 0.28 deleterious(0.03) benign(0.001) TCGA-W3-A824-06 8 27297773 27297773 C T PTK2B Silent p.I618I 0.58 TCGA-W3-A824-06 8 27320816 27320816 G A CHRNA2 Missense_Mutation p.R382W 0.30 deleterious(0.01) probably_damaging(1) TCGA-W3-A824-06 8 27516788 27516788 C T SCARA3 Silent p.T367T 0.27 TCGA-W3-A824-06 8 35425731 35425731 G A UNC5D Silent p.K146K 0.49 TCGA-W3-A824-06 8 37792616 37792616 C T GOT1L1 Silent p.G349G 0.42 TCGA-W3-A824-06 8 37792617 37792617 C T GOT1L1 Missense_Mutation p.G349E 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 8 37794573 37794573 C T GOT1L1 Silent p.Q174Q 0.28 TCGA-W3-A824-06 8 38264945 38264945 A G LETM2 Silent p.S412S 0.21 TCGA-W3-A824-06 8 39581349 39581349 C T ADAM18 Silent p.F700F 0.29 TCGA-W3-A824-06 8 42608316 42608316 T A CHRNA6 3'UTR 0.25 TCGA-W3-A824-06 8 42692978 42692978 T A THAP1 3'UTR 0.16 TCGA-W3-A824-06 8 59059668 59059668 G A FAM110B Missense_Mutation p.M293I 0.29 tolerated(0.1) benign(0.001) TCGA-W3-A824-06 8 67968793 67968793 G A COPS5 Missense_Mutation p.P207L 0.56 deleterious(0) benign(0.167) TCGA-W3-A824-06 8 69009413 69009413 G A PREX2 Missense_Mutation p.G844S 0.39 tolerated(0.11) probably_damaging(0.999) TCGA-W3-A824-06 8 69017534 69017534 G A PREX2 Intron 0.31 TCGA-W3-A824-06 8 73848829 73848829 C T KCNB2 Silent p.I413I 0.55 TCGA-W3-A824-06 8 73848946 73848946 G A KCNB2 Missense_Mutation p.M452I 0.22 tolerated(0.25) benign(0.17) TCGA-W3-A824-06 8 73849364 73849364 G A KCNB2 Missense_Mutation p.E592K 0.54 tolerated_low_confidence(0.14) benign(0.037) TCGA-W3-A824-06 8 73849393 73849393 C T KCNB2 Silent p.S601S 0.36 TCGA-W3-A824-06 8 75157084 75157084 G - JPH1 Frame_Shift_Del p.Q529Sfs*27 0.16 TCGA-W3-A824-06 8 76470785 76470785 G A HNF4G Missense_Mutation p.E246K 0.29 tolerated(0.08) possibly_damaging(0.813) TCGA-W3-A824-06 8 76470836 76470836 C T HNF4G Missense_Mutation p.P263S 0.27 deleterious(0) probably_damaging(0.973) TCGA-W3-A824-06 8 76471184 76471184 C T HNF4G Silent p.I335I 0.45 TCGA-W3-A824-06 8 77767572 77767572 G A ZFHX4 Silent p.S2805S 0.59 TCGA-W3-A824-06 8 80567154 80567154 G C STMN2 Missense_Mutation p.E113Q 0.26 deleterious(0.04) probably_damaging(0.989) TCGA-W3-A824-06 8 85441594 85441594 A G RALYL Missense_Mutation p.K26R 0.48 deleterious(0.04) possibly_damaging(0.76) TCGA-W3-A824-06 8 86042218 86042218 G A LRRCC1 Missense_Mutation p.R564K 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-W3-A824-06 8 87076604 87076604 G A PSKH2 Nonsense_Mutation p.R148* 0.61 TCGA-W3-A824-06 8 92401628 92401628 A G SLC26A7 Missense_Mutation p.T580A 0.31 tolerated(0.05) benign(0.099) TCGA-W3-A824-06 8 92972507 92972507 G A RUNX1T1 Missense_Mutation p.P604L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-W3-A824-06 8 95406090 95406090 G T RAD54B Missense_Mutation p.L467M 0.04 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 8 96070095 96070095 C T NDUFAF6 Missense_Mutation p.P311L 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-W3-A824-06 8 97797172 97797172 C T CPQ Missense_Mutation p.S16F 0.49 tolerated_low_confidence(0.11) benign(0.001) TCGA-W3-A824-06 8 99264719 99264719 G A NIPAL2 Silent p.I116I 0.29 TCGA-W3-A824-06 9 100767338 100767338 C T ANP32B Silent p.P140P 0.34 TCGA-W3-A824-06 9 100892098 100892098 G A CORO2A Silent p.S315S 0.39 TCGA-W3-A824-06 9 104032204 104032204 G A LPPR1 Missense_Mutation p.E36K 0.46 deleterious(0) probably_damaging(0.986) TCGA-W3-A824-06 9 104171974 104171974 C T ZNF189 3'UTR 0.40 TCGA-W3-A824-06 9 107331487 107331487 C T OR13C8 Silent p.F13F 0.34 TCGA-W3-A824-06 9 112020480 112020480 G A EPB41L4B Silent p.I243I 0.38 TCGA-W3-A824-06 9 112899411 112899411 C T PALM2-AKAP2 Silent p.A529A 0.33 TCGA-W3-A824-06 9 113168932 113168932 C T SVEP1 Missense_Mutation p.G2983E 0.35 probably_damaging(1) TCGA-W3-A824-06 9 113208183 113208183 C T SVEP1 Missense_Mutation p.G1466E 0.31 probably_damaging(0.985) TCGA-W3-A824-06 9 116151913 116151913 G A ALAD Missense_Mutation p.P227L 0.48 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 9 119097255 119097255 C T PAPPA Silent p.V1171V 0.35 TCGA-W3-A824-06 9 119144773 119144773 G A PAPPA Splice_Site p.X1592_splice 0.46 TCGA-W3-A824-06 9 119737599 119737599 G A ASTN2 Missense_Mutation p.L542F 0.39 deleterious_low_confidence(0) unknown(0) TCGA-W3-A824-06 9 119738433 119738433 C T ASTN2 Missense_Mutation p.D520N 0.39 deleterious(0) unknown(0) TCGA-W3-A824-06 9 120474830 120474830 G A TLR4 Missense_Mutation p.E142K 0.39 tolerated(0.18) benign(0.02) TCGA-W3-A824-06 9 121930087 121930087 G A BRINP1 Missense_Mutation p.R521C 0.49 deleterious(0) probably_damaging(0.973) TCGA-W3-A824-06 9 121930352 121930352 C T BRINP1 Silent p.G432G 0.44 TCGA-W3-A824-06 9 122075478 122075478 C T BRINP1 Silent p.R52R 0.45 TCGA-W3-A824-06 9 123165335 123165335 G A CDK5RAP2 Missense_Mutation p.P1686S 0.35 tolerated(0.63) benign(0.221) TCGA-W3-A824-06 9 125282019 125282019 C T OR1J4 Silent p.F200F 0.35 TCGA-W3-A824-06 9 125377799 125377799 G A OR1Q1 Silent p.R261R 0.34 TCGA-W3-A824-06 9 128065001 128065001 C T GAPVD1 Missense_Mutation p.L309F 0.40 tolerated(0.09) probably_damaging(0.999) TCGA-W3-A824-06 9 129831562 129831562 G A RALGPS1 Silent p.S179S 0.40 TCGA-W3-A824-06 9 130106588 130106588 C T GARNL3 Silent p.A442A 0.29 TCGA-W3-A824-06 9 130106589 130106589 C T GARNL3 Missense_Mutation p.R443C 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 9 130289514 130289514 C T FAM129B Missense_Mutation p.V92M 0.27 deleterious(0) probably_damaging(0.927) TCGA-W3-A824-06 9 130425491 130425491 C T STXBP1 Missense_Mutation p.S146F 0.46 deleterious(0) probably_damaging(0.913) TCGA-W3-A824-06 9 130511663 130511663 G A SH2D3C Silent p.T322T 0.29 TCGA-W3-A824-06 9 131084797 131084797 C T TRUB2 5'UTR 0.43 TCGA-W3-A824-06 9 131257022 131257022 C T ODF2 Intron 0.74 TCGA-W3-A824-06 9 131289471 131289471 G A GLE1 Silent p.K381K 0.29 TCGA-W3-A824-06 9 131388819 131388819 C T SPTAN1 Silent p.S2143S 0.31 TCGA-W3-A824-06 9 131388820 131388820 T C SPTAN1 Missense_Mutation p.S2144P 0.31 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 9 131397191 131397191 C T WDR34 Missense_Mutation p.G331R 0.15 deleterious(0) benign(0.233) TCGA-W3-A824-06 9 131804593 131804593 C T FAM73B Missense_Mutation p.S36F 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 9 132593224 132593224 G A C9orf78 Silent p.S156S 0.38 TCGA-W3-A824-06 9 132593225 132593225 G A C9orf78 Missense_Mutation p.S156F 0.37 deleterious(0) probably_damaging(0.954) TCGA-W3-A824-06 9 133374952 133374952 C T ASS1 Silent p.S396S 0.26 TCGA-W3-A824-06 9 134348995 134348995 C T PRRC2B Silent p.T736T 0.32 TCGA-W3-A824-06 9 135942496 135942496 C T CEL Missense_Mutation p.P270S 0.34 tolerated(0.11) possibly_damaging(0.639) TCGA-W3-A824-06 9 136137548 136137548 G A ABO RNA 0.24 TCGA-W3-A824-06 9 136227215 136227215 G A SURF2 Missense_Mutation p.E198K 0.28 possibly_damaging(0.486) TCGA-W3-A824-06 9 136340543 136340543 G C SLC2A6 Missense_Mutation p.I251M 0.41 deleterious(0.05) possibly_damaging(0.718) TCGA-W3-A824-06 9 137704472 137704472 C T COL5A1 Missense_Mutation p.P1256S 0.40 unknown(0) TCGA-W3-A824-06 9 139272438 139272438 C T SNAPC4 Missense_Mutation p.A1281T 0.30 tolerated(0.17) possibly_damaging(0.82) TCGA-W3-A824-06 9 139324012 139324012 C T INPP5E 3'UTR 0.39 TCGA-W3-A824-06 9 139354519 139354519 G A SEC16A Missense_Mutation p.S1683F 0.47 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 9 139412305 139412305 G A NOTCH1 Missense_Mutation p.P447L 0.39 tolerated(0.09) possibly_damaging(0.904) TCGA-W3-A824-06 9 139412306 139412306 G A NOTCH1 Missense_Mutation p.P447S 0.40 deleterious(0.04) possibly_damaging(0.85) TCGA-W3-A824-06 9 139616499 139616499 C - FAM69B Intron 0.36 TCGA-W3-A824-06 9 139650895 139650895 G A LCN8 Intron 0.25 TCGA-W3-A824-06 9 139903902 139903902 G A ABCA2 Silent p.C2249C 0.33 TCGA-W3-A824-06 9 139904335 139904335 C T ABCA2 Silent p.E2172E 0.38 TCGA-W3-A824-06 9 139944746 139944746 C T ENTPD2 Missense_Mutation p.G340E 0.27 deleterious(0.01) possibly_damaging(0.789) TCGA-W3-A824-06 9 140051220 140051220 C T GRIN1 Silent p.N278N 0.36 TCGA-W3-A824-06 9 141015946 141015946 C T CACNA1B Missense_Mutation p.P2172L 0.52 deleterious(0) probably_damaging(0.962) TCGA-W3-A824-06 9 141070105 141070105 G A TUBBP5 RNA 0.24 TCGA-W3-A824-06 9 14801850 14801850 T A FREM1 Missense_Mutation p.E1165V 0.36 deleterious(0) benign(0.196) TCGA-W3-A824-06 9 15047968 15047968 C T RP11-54D18.3 RNA 0.31 TCGA-W3-A824-06 9 15657294 15657294 C T CCDC171 Intron 0.36 TCGA-W3-A824-06 9 17309213 17309213 C T CNTLN Missense_Mutation p.P435L 0.36 tolerated(0.45) benign(0.009) TCGA-W3-A824-06 9 18622330 18622330 C T ADAMTSL1 Silent p.V188V 0.34 TCGA-W3-A824-06 9 18777420 18777420 C T ADAMTSL1 Silent p.L1065L 0.57 TCGA-W3-A824-06 9 18889582 18889582 G A ADAMTSL1 Silent p.V1493V 0.29 TCGA-W3-A824-06 9 18892414 18892414 T A ADAMTSL1 Nonsense_Mutation p.C1557* 0.44 TCGA-W3-A824-06 9 21206951 21206951 G A IFNA10 Missense_Mutation p.P49L 0.33 tolerated(0.09) possibly_damaging(0.696) TCGA-W3-A824-06 9 21239834 21239834 T C IFNA14 Missense_Mutation p.N34S 0.41 tolerated(0.43) benign(0.136) TCGA-W3-A824-06 9 2718550 2718550 C T KCNV2 Missense_Mutation p.L271F 0.36 deleterious(0) probably_damaging(0.999) TCGA-W3-A824-06 9 27197425 27197425 G A TEK Silent p.E579E 0.31 TCGA-W3-A824-06 9 27203090 27203090 G A TEK Missense_Mutation p.E728K 0.45 tolerated(0.36) benign(0.211) TCGA-W3-A824-06 9 27212730 27212730 C T TEK Silent p.Y904Y 0.37 TCGA-W3-A824-06 9 27950330 27950330 C T LINGO2 Missense_Mutation p.G114S 0.37 tolerated(1) benign(0.012) TCGA-W3-A824-06 9 32543159 32543159 G A TOPORS Missense_Mutation p.T455M 0.43 tolerated(0.11) possibly_damaging(0.793) TCGA-W3-A824-06 9 32631590 32631590 C T TAF1L Missense_Mutation p.D1330N 0.30 deleterious(0) probably_damaging(0.971) TCGA-W3-A824-06 9 32634084 32634084 G T TAF1L Silent p.R498R 0.38 TCGA-W3-A824-06 9 33056197 33056197 G A SMU1 Missense_Mutation p.R346C 0.36 deleterious(0.03) benign(0.4) TCGA-W3-A824-06 9 34402449 34402449 T C FAM219A Missense_Mutation p.K94E 0.37 deleterious(0) benign(0.197) TCGA-W3-A824-06 9 34623554 34623554 C T ARID3C Missense_Mutation p.A245T 0.59 tolerated(0.77) benign(0.001) TCGA-W3-A824-06 9 34647832 34647832 G A GALT Silent p.K127K 0.32 TCGA-W3-A824-06 9 35403940 35403940 C T UNC13B Silent p.L1562L 0.23 TCGA-W3-A824-06 9 35618083 35618083 C T CD72 Missense_Mutation p.E40K 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 9 35673897 35673897 G A CA9 5'UTR 0.48 TCGA-W3-A824-06 9 35809531 35809531 A T NPR2 3'UTR 0.38 TCGA-W3-A824-06 9 40716016 40716016 G A FAM74A3 RNA 0.14 TCGA-W3-A824-06 9 5164193 5164193 C T INSL6 Missense_Mutation p.G121E 0.41 tolerated(0.11) benign(0.018) TCGA-W3-A824-06 9 6981095 6981095 G T KDM4C Missense_Mutation p.R364S 0.43 tolerated(0.58) benign(0.011) TCGA-W3-A824-06 9 71627921 71627921 G A PRKACG 3'UTR 0.38 TCGA-W3-A824-06 9 71869266 71869266 C A TJP2 Silent p.A1214A 0.26 TCGA-W3-A824-06 9 71869267 71869267 C T TJP2 Nonsense_Mutation p.R1215* 0.26 TCGA-W3-A824-06 9 82334983 82334983 C T TLE4 Missense_Mutation p.S538F 0.38 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 9 84606249 84606249 C T SPATA31D1 Silent p.P288P 0.39 TCGA-W3-A824-06 9 8486022 8486022 G A PTPRD Missense_Mutation p.S932L 0.43 deleterious(0.02) benign(0.171) TCGA-W3-A824-06 9 86570325 86570325 G A C9orf64 Missense_Mutation p.P190S 0.27 tolerated(0.11) possibly_damaging(0.658) TCGA-W3-A824-06 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.33 TCGA-W3-A824-06 9 90501811 90501811 G A SPATA31E1 Silent p.R803R 0.41 TCGA-W3-A824-06 9 90501880 90501880 C T SPATA31E1 Silent p.F826F 0.38 TCGA-W3-A824-06 9 90584148 90584148 G A CDK20 Silent p.F268F 0.26 TCGA-W3-A824-06 9 91606943 91606943 G A C9orf47 3'UTR 0.35 TCGA-W3-A824-06 9 91994186 91994186 C T SEMA4D Silent p.V674V 0.30 TCGA-W3-A824-06 9 93983270 93983270 C - AUH Frame_Shift_Del p.T221Hfs*33 0.28 TCGA-W3-A824-06 9 94499800 94499800 C T ROR2 Silent p.Q165Q 0.28 TCGA-W3-A824-06 9 96051806 96051806 G A WNK2 Silent p.G1627G 0.25 TCGA-W3-A824-06 9 99013717 99013717 C T HSD17B3 Missense_Mutation p.A146T 0.30 tolerated(0.76) benign(0.001) TCGA-W3-A824-06 9 99489024 99489024 C T RP11-535M15.2 RNA 0.31 TCGA-W3-A824-06 X 100630293 100630293 C T BTK 5'UTR 0.74 TCGA-W3-A824-06 X 101138655 101138655 C T ZMAT1 Missense_Mutation p.E582K 0.71 tolerated(0.47) benign(0.003) TCGA-W3-A824-06 X 102564616 102564616 C T BEX2 Missense_Mutation p.E129K 0.82 deleterious(0.05) possibly_damaging(0.557) TCGA-W3-A824-06 X 107331311 107331311 G A PSMD10 Missense_Mutation p.H78Y 0.76 deleterious(0.03) probably_damaging(0.943) TCGA-W3-A824-06 X 107898683 107898683 C T COL4A5 Silent p.F1123F 0.64 TCGA-W3-A824-06 X 107938566 107938566 C T COL4A5 Missense_Mutation p.R1631C 0.85 probably_damaging(1) TCGA-W3-A824-06 X 11160403 11160403 C T ARHGAP6 Missense_Mutation p.G736E 0.83 deleterious(0.01) probably_damaging(0.945) TCGA-W3-A824-06 X 117032927 117032927 G A KLHL13 Missense_Mutation p.P641S 0.80 deleterious(0.02) probably_damaging(0.998) TCGA-W3-A824-06 X 118221085 118221085 G A KIAA1210 Missense_Mutation p.P1370S 0.75 tolerated(0.55) possibly_damaging(0.842) TCGA-W3-A824-06 X 118723252 118723252 G A NKRF 3'UTR 0.74 TCGA-W3-A824-06 X 120009171 120009171 C T CT47B1 Silent p.A118A 0.88 TCGA-W3-A824-06 X 128890516 128890516 C T XPNPEP2 Missense_Mutation p.S451F 0.81 deleterious(0) probably_damaging(0.998) TCGA-W3-A824-06 X 135432265 135432265 T C GPR112 Missense_Mutation p.S2134P 0.70 tolerated(0.22) benign(0.004) TCGA-W3-A824-06 X 140335850 140335850 C T SPANXC Missense_Mutation p.D32N 0.29 tolerated(0.56) benign(0.009) TCGA-W3-A824-06 X 140996638 140996638 C T MAGEC1 3'UTR 0.65 TCGA-W3-A824-06 X 142113848 142113848 C T SPANXN4 Silent p.P16P 0.83 TCGA-W3-A824-06 X 148072758 148072758 G A AFF2 Missense_Mutation p.D1278N 0.75 deleterious(0.04) possibly_damaging(0.826) TCGA-W3-A824-06 X 149787540 149787540 A G MTM1 Silent p.K124K 0.71 TCGA-W3-A824-06 X 151366229 151366229 G A GABRA3 Silent p.F269F 0.85 TCGA-W3-A824-06 X 151870133 151870133 C T MAGEA6 Missense_Mutation p.P275S 0.81 deleterious(0.03) benign(0.431) TCGA-W3-A824-06 X 151935608 151935608 C T MAGEA3 Missense_Mutation p.D187N 0.73 tolerated(0.15) benign(0.132) TCGA-W3-A824-06 X 153223519 153223519 G A HCFC1 Missense_Mutation p.T662I 0.95 deleterious(0) probably_damaging(0.993) TCGA-W3-A824-06 X 153283502 153283502 G A IRAK1 Silent p.Y288Y 0.66 TCGA-W3-A824-06 X 1761716 1761716 G A ASMT Missense_Mutation p.E311K 0.46 deleterious(0) probably_damaging(0.973) TCGA-W3-A824-06 X 18969244 18969244 G A PHKA2 Silent p.F144F 0.78 TCGA-W3-A824-06 X 2827940 2827940 G A ARSD Nonsense_Mutation p.R406* 0.90 TCGA-W3-A824-06 X 2827941 2827941 G A ARSD Silent p.G405G 0.90 TCGA-W3-A824-06 X 30237019 30237019 G A MAGEB2 Missense_Mutation p.E108K 0.70 tolerated(0.46) benign(0) TCGA-W3-A824-06 X 3238702 3238702 G A MXRA5 Missense_Mutation p.P1675L 0.82 tolerated(0.11) benign(0.06) TCGA-W3-A824-06 X 3241350 3241350 C T MXRA5 Silent p.G792G 0.75 TCGA-W3-A824-06 X 3248338 3248338 G A MXRA5 Missense_Mutation p.P144S 0.47 deleterious(0) probably_damaging(0.987) TCGA-W3-A824-06 X 34961980 34961980 C T FAM47B Silent p.F344F 0.82 TCGA-W3-A824-06 X 36007535 36007535 G A CXorf22 Missense_Mutation p.G938E 0.63 deleterious(0) probably_damaging(1) TCGA-W3-A824-06 X 37027044 37027044 C T FAM47C Silent p.S187S 0.65 TCGA-W3-A824-06 X 37027662 37027662 G A FAM47C Silent p.E393E 0.79 TCGA-W3-A824-06 X 43571131 43571131 C T MAOA Missense_Mutation p.P107S 0.65 tolerated(0.35) benign(0.007) TCGA-W3-A824-06 X 43698212 43698212 C G MAOB Missense_Mutation p.V61L 0.71 deleterious(0.03) benign(0.331) TCGA-W3-A824-06 X 48419302 48419302 A G TBC1D25 Missense_Mutation p.D669G 0.80 tolerated(0.14) benign(0.221) TCGA-W3-A824-06 X 52681339 52681339 C T SSX7 Silent p.G81G 0.73 TCGA-W3-A824-06 X 54780128 54780128 C T ITIH6 Missense_Mutation p.G1103E 0.93 tolerated(0.1) benign(0.026) TCGA-W3-A824-06 X 57405108 57405108 T G FAAH2 Missense_Mutation p.F256C 0.68 deleterious(0) probably_damaging(0.957) TCGA-W3-A824-06 X 64141834 64141834 G A ZC4H2 Missense_Mutation p.R30C 0.64 deleterious(0) probably_damaging(0.947) TCGA-W3-A824-06 X 69639969 69639969 C T KIF4A Missense_Mutation p.P1185S 0.80 tolerated_low_confidence(0.9) benign(0.002) TCGA-W3-A824-06 X 69639970 69639970 C T KIF4A Missense_Mutation p.P1185L 0.80 tolerated_low_confidence(0.51) benign(0) TCGA-W3-A824-06 X 73046067 73046067 G A XIST RNA 0.80 TCGA-W3-A824-06 X 73960541 73960541 G A KIAA2022 Missense_Mutation p.A1284V 0.91 deleterious(0.05) benign(0.005) TCGA-W3-A824-06 X 73964204 73964204 C T KIAA2022 Missense_Mutation p.G63D 0.76 tolerated_low_confidence(0.13) possibly_damaging(0.474) TCGA-W3-A824-06 X 77529173 77529173 T C CYSLTR1 Missense_Mutation p.Q24R 0.81 tolerated(0.49) benign(0.005) TCGA-W3-A824-06 X 77912841 77912841 G A ZCCHC5 Silent p.I359I 0.74 TCGA-W3-A824-06 X 77913318 77913318 G A ZCCHC5 Silent p.F200F 0.60 TCGA-W3-A824-06 X 91642896 91642896 C T PCDH11X Missense_Mutation p.R1103C 0.62 deleterious(0) probably_damaging(0.996) TCGA-W3-A824-06 Y 16952875 16952875 G C NLGN4Y Missense_Mutation p.E728D 0.69 deleterious_low_confidence(0.05) probably_damaging(0.952) TCGA-W3-A825-06 10 102055990 102055990 C T PKD2L1 Missense_Mutation p.M415I 0.33 deleterious(0.05) benign(0.012) TCGA-W3-A825-06 10 102738321 102738321 G A SEMA4G Silent p.R189R 0.35 TCGA-W3-A825-06 10 103427732 103427732 C T FBXW4 Nonsense_Mutation p.W227* 0.28 TCGA-W3-A825-06 10 105657335 105657335 G A OBFC1 Missense_Mutation p.P242S 0.51 deleterious(0.04) probably_damaging(0.982) TCGA-W3-A825-06 10 106976697 106976697 G A SORCS3 Missense_Mutation p.D851N 0.35 deleterious(0.01) probably_damaging(0.934) TCGA-W3-A825-06 10 107023106 107023106 G A SORCS3 Missense_Mutation p.E1215K 0.44 deleterious(0) possibly_damaging(0.824) TCGA-W3-A825-06 10 114154734 114154734 C T ACSL5 Silent p.S66S 0.19 TCGA-W3-A825-06 10 115959061 115959061 C T TDRD1 Missense_Mutation p.R172C 0.30 tolerated(0.17) probably_damaging(0.942) TCGA-W3-A825-06 10 115982435 115982435 G A TDRD1 Missense_Mutation p.G994R 0.34 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 10 118137974 118137974 G A CCDC172 Missense_Mutation p.M231I 0.25 tolerated(0.21) benign(0.012) TCGA-W3-A825-06 10 118314752 118314752 G A PNLIP Missense_Mutation p.D212N 0.36 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 10 12191686 12191686 A T SEC61A2 Missense_Mutation p.T105S 0.07 tolerated(1) benign(0.001) TCGA-W3-A825-06 10 123845492 123845492 C T TACC2 Silent p.L1159L 0.18 TCGA-W3-A825-06 10 123984270 123984270 G A TACC2 Missense_Mutation p.E2526K 0.27 probably_damaging(0.999) TCGA-W3-A825-06 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.23 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 10 124457478 124457478 C T C10orf120 Missense_Mutation p.G260E 0.36 tolerated(0.12) benign(0.074) TCGA-W3-A825-06 10 124610151 124610151 G A CUZD1 5'UTR 0.38 TCGA-W3-A825-06 10 128974576 128974576 C T FAM196A Missense_Mutation p.M28I 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-W3-A825-06 10 135038311 135038311 G A KNDC1 Missense_Mutation p.A1723T 0.38 tolerated(0.08) benign(0.175) TCGA-W3-A825-06 10 135126424 135126424 C T ZNF511 3'UTR 0.41 TCGA-W3-A825-06 10 15258012 15258012 G A FAM171A1 Silent p.L323L 0.50 TCGA-W3-A825-06 10 15688979 15688979 C T ITGA8 Missense_Mutation p.G358E 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 10 21129771 21129771 T A NEBL Missense_Mutation p.Y412F 0.62 deleterious(0) probably_damaging(0.99) TCGA-W3-A825-06 10 26851354 26851354 C T APBB1IP Missense_Mutation p.S490L 0.13 tolerated(0.06) benign(0.001) TCGA-W3-A825-06 10 28101442 28101442 C T ARMC4 Silent p.%3D 0.45 TCGA-W3-A825-06 10 31134230 31134230 G A ZNF438 Missense_Mutation p.S716F 0.38 tolerated(0.47) possibly_damaging(0.837) TCGA-W3-A825-06 10 33469242 33469242 C T NRP1 Missense_Mutation p.R845K 0.49 tolerated(0.67) benign(0.002) TCGA-W3-A825-06 10 37431008 37431008 A T ANKRD30A Missense_Mutation p.I339F 0.54 deleterious(0.03) benign(0.227) TCGA-W3-A825-06 10 37508057 37508057 A G ANKRD30A Silent p.L1083L 0.11 TCGA-W3-A825-06 10 45643029 45643029 G A RP11-445N18.7 Splice_Site 0.47 TCGA-W3-A825-06 10 46963907 46963907 C T SYT15 Silent p.K352K 0.21 TCGA-W3-A825-06 10 46999902 46999902 C T GPRIN2 Missense_Mutation p.P341L 0.17 deleterious(0.03) probably_damaging(1) TCGA-W3-A825-06 10 49440195 49440195 G A FRMPD2 Silent p.L377L 0.35 TCGA-W3-A825-06 10 49482596 49482596 C T FRMPD2 Silent p.T5T 0.27 TCGA-W3-A825-06 10 50532573 50532573 G A C10orf71 Silent p.E661E 0.33 TCGA-W3-A825-06 10 50824115 50824115 G A CHAT Intron 0.15 TCGA-W3-A825-06 10 50828637 50828637 C T CHAT Missense_Mutation p.P226S 0.37 tolerated(0.74) benign(0.019) TCGA-W3-A825-06 10 52390555 52390555 C T RP11-50E11.3 RNA 0.39 TCGA-W3-A825-06 10 55583025 55583025 G A PCDH15 Silent p.S1489S 0.33 TCGA-W3-A825-06 10 5948256 5948256 C T FBXO18 Silent p.S189S 0.41 TCGA-W3-A825-06 10 60553253 60553253 C T BICC1 Missense_Mutation p.P353S 0.43 deleterious(0) probably_damaging(0.997) TCGA-W3-A825-06 10 60998379 60998379 G A PHYHIPL Silent p.L170L 0.23 TCGA-W3-A825-06 10 61830474 61830474 C T ANK3 Missense_Mutation p.D3389N 0.34 probably_damaging(0.978) TCGA-W3-A825-06 10 61831038 61831038 G A ANK3 Missense_Mutation p.P3201S 0.30 probably_damaging(0.992) TCGA-W3-A825-06 10 63850953 63850953 C T ARID5B Silent p.S577S 0.28 TCGA-W3-A825-06 10 69954140 69954140 G A MYPN Silent p.G982G 0.27 TCGA-W3-A825-06 10 70332178 70332178 G A TET1 Missense_Mutation p.R28Q 0.45 deleterious(0) benign(0.037) TCGA-W3-A825-06 10 72357790 72357790 C T PRF1 3'UTR 0.23 TCGA-W3-A825-06 10 72539362 72539362 G A TBATA Silent p.P138P 0.53 TCGA-W3-A825-06 10 73565592 73565592 G A CDH23 Silent p.E394E 0.32 TCGA-W3-A825-06 10 74684358 74684358 C T OIT3 Silent p.T441T 0.36 TCGA-W3-A825-06 10 7759724 7759724 A G ITIH2 Silent p.Q201Q 0.40 TCGA-W3-A825-06 10 82112277 82112277 C T DYDC1 Silent p.V27V 0.41 TCGA-W3-A825-06 10 82122757 82122757 G A DYDC2 Silent p.K80K 0.26 TCGA-W3-A825-06 10 84738757 84738757 G A NRG3 Silent p.R488R 0.33 TCGA-W3-A825-06 10 88227215 88227215 G A WAPAL Missense_Mutation p.R731C 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 10 88421072 88421072 G A OPN4 Missense_Mutation p.V345M 0.35 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 10 88703566 88703566 C T MMRN2 Silent p.S325S 0.42 TCGA-W3-A825-06 10 88722373 88722373 C T SNCG Missense_Mutation p.P102S 0.36 tolerated(0.06) benign(0.011) TCGA-W3-A825-06 10 95661277 95661277 C T SLC35G1 3'UTR 0.36 TCGA-W3-A825-06 10 96493192 96493192 G A CYP2C18 Missense_Mutation p.A430T 0.31 tolerated(0.34) benign(0.07) TCGA-W3-A825-06 10 98170141 98170141 C T TLL2 Missense_Mutation p.R380K 0.47 deleterious(0.02) possibly_damaging(0.63) TCGA-W3-A825-06 10 98386544 98386544 G A PIK3AP1 Silent p.P530P 0.30 TCGA-W3-A825-06 10 99511190 99511190 C T ZFYVE27 Missense_Mutation p.P288S 0.22 tolerated(0.08) probably_damaging(0.954) TCGA-W3-A825-06 10 99511191 99511191 C T ZFYVE27 Missense_Mutation p.P288L 0.22 deleterious(0) probably_damaging(0.967) TCGA-W3-A825-06 11 101937309 101937309 G A C11orf70 Missense_Mutation p.R121Q 0.29 deleterious(0) probably_damaging(0.983) TCGA-W3-A825-06 11 102824954 102824954 G A MMP13 Missense_Mutation p.P190S 0.37 tolerated(0.08) probably_damaging(1) TCGA-W3-A825-06 11 105967687 105967687 C T AASDHPPT 3'UTR 0.29 TCGA-W3-A825-06 11 107207318 107207318 T C CWF19L2 Missense_Mutation p.K775R 0.24 tolerated(0.52) benign(0.02) TCGA-W3-A825-06 11 107207328 107207328 G A CWF19L2 Missense_Mutation p.P772S 0.58 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 1103315 1103315 C T MUC2 Missense_Mutation p.P2689S 0.35 unknown(0) TCGA-W3-A825-06 11 111631714 111631714 G A PPP2R1B Missense_Mutation p.S123F 0.63 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 113264246 113264246 A C ANKK1 Missense_Mutation p.K77Q 0.43 deleterious(0.02) probably_damaging(0.939) TCGA-W3-A825-06 11 113283291 113283291 G A DRD2 Silent p.L375L 0.56 TCGA-W3-A825-06 11 113683217 113683217 G A USP28 Missense_Mutation p.R585C 0.49 deleterious(0) probably_damaging(0.971) TCGA-W3-A825-06 11 117864772 117864772 G A IL10RA Missense_Mutation p.G199E 0.50 deleterious(0) probably_damaging(0.992) TCGA-W3-A825-06 11 117979596 117979596 T A TMPRSS4 Missense_Mutation p.S190T 0.17 deleterious(0) possibly_damaging(0.899) TCGA-W3-A825-06 11 118076660 118076680 GAAAACACATCCCATCTGAAT - AMICA1 In_Frame_Del p.I151_F157del 0.19 TCGA-W3-A825-06 11 118081367 118081367 G A AMICA1 Missense_Mutation p.R87C 0.29 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 118343833 118343833 C T KMT2A Silent p.P653P 0.39 TCGA-W3-A825-06 11 119206336 119206336 C T RNF26 Silent p.A168A 0.41 TCGA-W3-A825-06 11 121384861 121384861 G A SORL1 Missense_Mutation p.E348K 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A825-06 11 121986220 121986220 C T BLID 3'UTR 0.59 TCGA-W3-A825-06 11 123810339 123810339 C T OR4D5 Missense_Mutation p.H6Y 0.40 tolerated(1) benign(0.001) TCGA-W3-A825-06 11 124180570 124180570 G A OR8D1 Silent p.F31F 0.47 TCGA-W3-A825-06 11 124252812 124252812 A C OR8B2 Missense_Mutation p.M143R 0.16 tolerated_low_confidence(0.35) benign(0.143) TCGA-W3-A825-06 11 124253053 124253053 G A OR8B2 Missense_Mutation p.L63F 0.42 deleterious_low_confidence(0) benign(0.059) TCGA-W3-A825-06 11 125359608 125359608 G A FEZ1 Silent p.D22D 0.33 TCGA-W3-A825-06 11 128805513 128805513 C T TP53AIP1 Silent p.Q116Q 0.31 TCGA-W3-A825-06 11 128840849 128840849 G A ARHGAP32 Missense_Mutation p.P1406L 0.30 deleterious_low_confidence(0.01) benign(0.013) TCGA-W3-A825-06 11 133712383 133712383 C T SPATA19 Missense_Mutation p.R145Q 0.53 tolerated(0.08) possibly_damaging(0.776) TCGA-W3-A825-06 11 17491734 17491734 G A ABCC8 Missense_Mutation p.P109L 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 11 17491757 17491757 G A ABCC8 Silent p.S101S 0.30 TCGA-W3-A825-06 11 17793863 17793863 C T KCNC1 Missense_Mutation p.P408S 0.34 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 20982036 20982036 G A NELL1 Nonsense_Mutation p.W410* 0.38 TCGA-W3-A825-06 11 33113841 33113841 C T CSTF3 Missense_Mutation p.G474E 0.30 tolerated(0.08) benign(0.093) TCGA-W3-A825-06 11 33163405 33163405 G A CSTF3 Intron 0.31 TCGA-W3-A825-06 11 44074619 44074620 - T ACCSL Splice_Site p.X316_splice 0.28 TCGA-W3-A825-06 11 4594702 4594702 C T C11orf40 Missense_Mutation p.E48K 0.26 tolerated_low_confidence(0.14) possibly_damaging(0.486) TCGA-W3-A825-06 11 48285760 48285760 G A OR4X1 Missense_Mutation p.M116I 0.32 deleterious(0) probably_damaging(0.993) TCGA-W3-A825-06 11 48510399 48510399 C T OR4A47 Missense_Mutation p.P19S 0.38 deleterious_low_confidence(0.05) benign(0.039) TCGA-W3-A825-06 11 4928915 4928915 G A OR51A7 Missense_Mutation p.G106R 0.39 tolerated(0.27) benign(0.213) TCGA-W3-A825-06 11 51515353 51515353 C T OR4C46 Silent p.I24I 0.28 TCGA-W3-A825-06 11 5255235 5255235 G A HBD Missense_Mutation p.P101S 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-W3-A825-06 11 5270651 5270651 G A HBG1 Nonsense_Mutation p.Q88* 0.65 TCGA-W3-A825-06 11 5275575 5275575 G A HBG2 Nonsense_Mutation p.Q88* 0.14 TCGA-W3-A825-06 11 5344952 5344952 G A OR51B2 Silent p.F192F 0.32 TCGA-W3-A825-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.32 tolerated(0.65) benign(0.008) TCGA-W3-A825-06 11 5363829 5363829 C T OR51B5 Missense_Mutation p.R309K 0.36 tolerated(0.37) benign(0.005) TCGA-W3-A825-06 11 55110739 55110739 G A OR4A16 Silent p.V21V 0.31 TCGA-W3-A825-06 11 5566080 5566080 G A OR52H1 Missense_Mutation p.S225F 0.53 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 55703008 55703008 A C OR5I1 Missense_Mutation p.L290W 0.36 deleterious(0) probably_damaging(0.959) TCGA-W3-A825-06 11 55873104 55873104 G A OR8H2 Missense_Mutation p.E196K 0.33 deleterious(0.02) probably_damaging(0.974) TCGA-W3-A825-06 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.38 TCGA-W3-A825-06 11 55890512 55890512 C T OR8H3 Missense_Mutation p.L222F 0.37 tolerated(0.11) benign(0.443) TCGA-W3-A825-06 11 55890546 55890546 G A OR8H3 Missense_Mutation p.G233E 0.44 deleterious(0) possibly_damaging(0.729) TCGA-W3-A825-06 11 56237282 56237282 C T OR5M3 Missense_Mutation p.G231E 0.34 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 11 56310548 56310548 G A OR5M11 Silent p.F62F 0.32 TCGA-W3-A825-06 11 56344526 56344526 C T OR5M10 Silent p.A224A 0.36 TCGA-W3-A825-06 11 56431765 56431765 C T OR5AR1 Silent p.L202L 0.43 TCGA-W3-A825-06 11 56949416 56949416 C T LRRC55 Missense_Mutation p.L17F 0.40 deleterious_low_confidence(0) benign(0.102) TCGA-W3-A825-06 11 56949916 56949916 C T LRRC55 Silent p.V183V 0.44 TCGA-W3-A825-06 11 57574420 57574420 C T CTNND1 Missense_Mutation p.T643I 0.40 tolerated(0.07) benign(0.002) TCGA-W3-A825-06 11 58978964 58978964 C T MPEG1 Missense_Mutation p.E459K 0.48 tolerated(0.33) benign(0.01) TCGA-W3-A825-06 11 59345723 59345723 G A OSBP Silent p.F653F 0.47 TCGA-W3-A825-06 11 6007691 6007691 C T OR52L1 Missense_Mutation p.G157E 0.52 tolerated(0.19) benign(0.004) TCGA-W3-A825-06 11 61404558 61404558 C T RPLP0P2 RNA 0.21 TCGA-W3-A825-06 11 61665819 61665819 G A RAB3IL1 Silent p.F360F 0.40 TCGA-W3-A825-06 11 62291622 62291622 T C AHNAK Missense_Mutation p.N3423D 0.48 possibly_damaging(0.535) TCGA-W3-A825-06 11 6245214 6245214 C G FAM160A2 Missense_Mutation p.E135Q 0.31 tolerated(0.13) benign(0.434) TCGA-W3-A825-06 11 63233607 63233607 C T HRASLS5 Missense_Mutation p.R241K 0.43 deleterious(0) possibly_damaging(0.872) TCGA-W3-A825-06 11 63721495 63721495 C T NAA40 Silent p.A182A 0.30 TCGA-W3-A825-06 11 64595072 64595072 G A CDC42BPG Silent p.L1359L 0.30 TCGA-W3-A825-06 11 64595243 64595243 G A CDC42BPG Missense_Mutation p.P1327L 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-W3-A825-06 11 64846828 64846828 G A CDCA5 Silent p.I225I 0.45 TCGA-W3-A825-06 11 65793563 65793563 A G CATSPER1 Silent p.F96F 0.50 TCGA-W3-A825-06 11 67173172 67173172 G A TBC1D10C Missense_Mutation p.G156E 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 69488070 69488070 G A ORAOV1 Missense_Mutation p.R24W 0.28 deleterious(0) benign(0.013) TCGA-W3-A825-06 11 70332147 70332147 A G SHANK2 Silent p.F1418F 0.44 TCGA-W3-A825-06 11 7059831 7059831 C T NLRP14 Missense_Mutation p.S5L 0.38 tolerated(0.22) benign(0.001) TCGA-W3-A825-06 11 72145572 72145572 C T CLPB 5'UTR 0.61 TCGA-W3-A825-06 11 7324559 7324559 G A SYT9 Silent p.Q145Q 0.46 TCGA-W3-A825-06 11 7324560 7324560 G A SYT9 Missense_Mutation p.E146K 0.46 tolerated(0.09) benign(0.012) TCGA-W3-A825-06 11 76877175 76877175 C T MYO7A Silent p.F588F 0.40 TCGA-W3-A825-06 11 77702208 77702208 G A INTS4 Silent p.V64V 0.49 TCGA-W3-A825-06 11 77781047 77781047 G A NDUFC2 Missense_Mutation p.H116Y 0.57 tolerated(0.97) benign(0.039) TCGA-W3-A825-06 11 78147746 78147746 G A NARS2 Silent p.F468F 0.46 TCGA-W3-A825-06 11 78413290 78413290 G A TENM4 Silent p.F1456F 0.22 TCGA-W3-A825-06 11 78433754 78433754 C T TENM4 Silent p.R1253R 0.23 TCGA-W3-A825-06 11 83173060 83173060 C T DLG2 Missense_Mutation p.G936R 0.14 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 11 88300718 88300718 G A GRM5 Silent p.L711L 0.49 TCGA-W3-A825-06 11 88780707 88780707 A G GRM5 Missense_Mutation p.F112L 0.27 tolerated(0.14) probably_damaging(0.997) TCGA-W3-A825-06 11 88911638 88911638 T A TYR Missense_Mutation p.Y173N 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 11 89537255 89537255 G A TRIM49 Missense_Mutation p.P128L 0.21 deleterious(0) possibly_damaging(0.901) TCGA-W3-A825-06 11 92430572 92430572 G A FAT3 Silent p.R1210R 0.38 TCGA-W3-A825-06 11 94040385 94040385 G A FOLR4 Missense_Mutation p.D128N 0.45 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 11 94113644 94113644 G A GPR83 Silent p.L315L 0.47 TCGA-W3-A825-06 12 101368560 101368560 G A ANO4 Intron 0.37 TCGA-W3-A825-06 12 101493440 101493440 G A ANO4 Silent p.K662K 0.39 TCGA-W3-A825-06 12 101578000 101578000 G A SLC5A8 Missense_Mutation p.L322F 0.34 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 12 101880650 101880650 G A SPIC 3'UTR 0.40 TCGA-W3-A825-06 12 103248989 103248989 G A PAH Missense_Mutation p.P211S 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-W3-A825-06 12 103762732 103762732 G A C12orf42 Silent p.F64F 0.69 TCGA-W3-A825-06 12 104031941 104031941 G A STAB2 Missense_Mutation p.G286E 0.41 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 12 104376665 104376665 T C TDG Silent p.F189F 0.06 TCGA-W3-A825-06 12 10746540 10746540 C T KLRAP1 RNA 0.33 TCGA-W3-A825-06 12 108589536 108589536 G A WSCD2 5'UTR 0.32 TCGA-W3-A825-06 12 109495820 109495820 T G USP30 Missense_Mutation p.W95G 0.17 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 10954778 10954778 G A TAS2R7 Missense_Mutation p.S131F 0.40 tolerated(0.7) benign(0.001) TCGA-W3-A825-06 12 10955206 10955206 G A TAS2R7 5'UTR 0.45 TCGA-W3-A825-06 12 11091001 11091001 C A TAS2R14 Missense_Mutation p.G269V 0.37 tolerated(0.08) benign(0.173) TCGA-W3-A825-06 12 111099124 111099124 C T HVCN1 Missense_Mutation p.E51K 0.42 tolerated(0.13) benign(0.242) TCGA-W3-A825-06 12 111785938 111785938 C T CUX2 Missense_Mutation p.P1424S 0.32 tolerated_low_confidence(0.76) benign(0.009) TCGA-W3-A825-06 12 112182645 112182645 C T ACAD10 Missense_Mutation p.S669F 0.36 tolerated(0.13) benign(0.262) TCGA-W3-A825-06 12 112631395 112631395 G A HECTD4 Missense_Mutation p.L2799F 0.33 probably_damaging(0.984) TCGA-W3-A825-06 12 112642400 112642400 A G HECTD4 Missense_Mutation p.V2574A 0.46 probably_damaging(0.996) TCGA-W3-A825-06 12 113334621 113334621 C T RPH3A 3'UTR 0.60 TCGA-W3-A825-06 12 113728762 113728762 C T TPCN1 Silent p.L712L 0.29 TCGA-W3-A825-06 12 114803950 114803950 C T TBX5 Intron 0.22 TCGA-W3-A825-06 12 117660539 117660539 C T NOS1 Missense_Mutation p.R1353Q 0.30 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 12 117723946 117723946 G A NOS1 Missense_Mutation p.S418L 0.40 deleterious(0) possibly_damaging(0.519) TCGA-W3-A825-06 12 117768799 117768799 C T NOS1 Missense_Mutation p.G26R 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-A825-06 12 122079179 122079179 C T ORAI1 Missense_Mutation p.S181F 0.38 deleterious(0) probably_damaging(0.992) TCGA-W3-A825-06 12 122826081 122826081 T C CLIP1 Missense_Mutation p.E557G 0.07 deleterious(0.03) probably_damaging(0.989) TCGA-W3-A825-06 12 123187783 123187783 C T HCAR2 Silent p.K16K 0.37 TCGA-W3-A825-06 12 123214031 123214031 G A HCAR1 Missense_Mutation p.P286S 0.40 tolerated(0.18) probably_damaging(0.998) TCGA-W3-A825-06 12 123214113 123214113 C T HCAR1 Silent p.G258G 0.35 TCGA-W3-A825-06 12 123214114 123214114 C T HCAR1 Missense_Mutation p.G258E 0.34 tolerated(0.13) benign(0.003) TCGA-W3-A825-06 12 123489810 123489810 G A PITPNM2 Missense_Mutation p.S310L 0.25 tolerated(0.06) probably_damaging(0.99) TCGA-W3-A825-06 12 124387556 124387556 G A DNAH10 Missense_Mutation p.M3119I 0.28 benign(0) TCGA-W3-A825-06 12 130855736 130855736 C T PIWIL1 Silent p.I779I 0.35 TCGA-W3-A825-06 12 133425237 133425237 G A CHFR Silent p.A534A 0.40 TCGA-W3-A825-06 12 18891609 18891609 G A CAPZA3 Missense_Mutation p.G136E 0.50 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 12 20766483 20766483 C T PDE3A Missense_Mutation p.S373F 0.43 deleterious(0) probably_damaging(0.969) TCGA-W3-A825-06 12 20801659 20801659 A C PDE3A Missense_Mutation p.H868P 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 12 20893170 20893170 C T SLCO1C1 Missense_Mutation p.S534F 0.31 tolerated(0.76) benign(0.013) TCGA-W3-A825-06 12 20893231 20893231 C T SLCO1C1 Silent p.F554F 0.38 TCGA-W3-A825-06 12 21329726 21329726 G A SLCO1B1 Missense_Mutation p.E126K 0.26 tolerated(0.08) benign(0.12) TCGA-W3-A825-06 12 21350096 21350096 G A SLCO1B1 Missense_Mutation p.G315E 0.41 tolerated(1) benign(0.009) TCGA-W3-A825-06 12 21918682 21918682 C T KCNJ8 Missense_Mutation p.G417E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-W3-A825-06 12 31945168 31945168 G A H3F3C 5'UTR 0.54 TCGA-W3-A825-06 12 33559958 33559958 C T SYT10 Silent p.K281K 0.27 TCGA-W3-A825-06 12 34175371 34175371 C T ALG10 5'UTR 0.45 TCGA-W3-A825-06 12 41327565 41327565 C T CNTN1 Silent p.T290T 0.38 TCGA-W3-A825-06 12 41331453 41331453 G A CNTN1 Missense_Mutation p.G398R 0.34 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 41333211 41333211 G A CNTN1 Missense_Mutation p.E435K 0.43 tolerated(0.06) possibly_damaging(0.479) TCGA-W3-A825-06 12 44161997 44161997 C T IRAK4 Missense_Mutation p.P28L 0.49 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 12 44161999 44161999 C T IRAK4 Nonsense_Mutation p.Q29* 0.48 TCGA-W3-A825-06 12 45568300 45568300 G A PLEKHA8P1 RNA 0.39 TCGA-W3-A825-06 12 46326911 46326911 T A SCAF11 Intron 0.38 TCGA-W3-A825-06 12 46599870 46599870 C T SLC38A1 Silent p.K213K 0.36 TCGA-W3-A825-06 12 48377200 48377200 G A COL2A1 Missense_Mutation p.P673S 0.31 benign(0.285) TCGA-W3-A825-06 12 48723795 48723795 G A H1FNT Missense_Mutation p.E241K 0.47 deleterious(0.01) possibly_damaging(0.486) TCGA-W3-A825-06 12 49391021 49391021 G A DDN Silent p.F546F 0.31 TCGA-W3-A825-06 12 49951450 49951450 G A KCNH3 Missense_Mutation p.R989Q 0.51 tolerated_low_confidence(0.38) benign(0) TCGA-W3-A825-06 12 50855081 50855081 G T LARP4 Nonsense_Mutation p.E429* 0.33 TCGA-W3-A825-06 12 51281055 51281055 G A TMPRSS12 Missense_Mutation p.G269E 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 52282558 52282558 G A ANKRD33 Missense_Mutation p.G118R 0.46 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 12 52308321 52308321 G A ACVRL1 Missense_Mutation p.E242K 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 52647039 52647039 C T KRT7 3'Flank 0.36 TCGA-W3-A825-06 12 52914058 52914058 G A KRT5 Missense_Mutation p.S8F 0.26 deleterious(0.02) unknown(0) TCGA-W3-A825-06 12 53647153 53647153 C T MFSD5 Silent p.N285N 0.38 TCGA-W3-A825-06 12 55421043 55421043 G A NEUROD4 Missense_Mutation p.E274K 0.37 tolerated(0.08) benign(0.09) TCGA-W3-A825-06 12 55523632 55523632 G A OR9K2 Missense_Mutation p.G27E 0.46 tolerated(0.51) benign(0.003) TCGA-W3-A825-06 12 56495711 56495711 C T ERBB3 Nonsense_Mutation p.Q1301* 0.38 TCGA-W3-A825-06 12 57114622 57114622 G A NACA Missense_Mutation p.P231L 0.35 deleterious_low_confidence(0) benign(0) TCGA-W3-A825-06 12 57398267 57398267 C T ZBTB39 Silent p.L145L 0.38 TCGA-W3-A825-06 12 58163605 58163605 G A METTL1 Missense_Mutation p.L137F 0.38 deleterious(0.01) benign(0.378) TCGA-W3-A825-06 12 62148667 62148667 G A FAM19A2 Missense_Mutation p.P82L 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 65762804 65762804 C T MSRB3 Missense_Mutation p.S104L 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 12 6602082 6602082 G A MRPL51 Missense_Mutation p.R46C 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A825-06 12 6623960 6623960 C T NCAPD2 Silent p.P287P 0.40 TCGA-W3-A825-06 12 69260732 69260732 G A CPM Missense_Mutation p.S295F 0.30 tolerated(0.18) benign(0.002) TCGA-W3-A825-06 12 70954521 70954521 C T PTPRB Silent p.R1454R 0.46 TCGA-W3-A825-06 12 7169837 7169837 G A C1S Missense_Mutation p.E22K 0.41 deleterious(0.02) possibly_damaging(0.469) TCGA-W3-A825-06 12 72025595 72025595 G A ZFC3H1 Missense_Mutation p.P1145S 0.38 tolerated(0.11) benign(0.166) TCGA-W3-A825-06 12 73012798 73012798 G A TRHDE Missense_Mutation p.E772K 0.35 tolerated(0.06) possibly_damaging(0.63) TCGA-W3-A825-06 12 7639218 7639218 C T CD163 Missense_Mutation p.G779R 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 12 7640358 7640358 C T CD163 Intron 0.41 TCGA-W3-A825-06 12 78583811 78583811 C T NAV3 Missense_Mutation p.P2013S 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 12 81239529 81239529 G A LIN7A Silent p.L155L 0.36 TCGA-W3-A825-06 12 81675102 81675102 C T PPFIA2 Missense_Mutation p.R1049K 0.39 deleterious(0) probably_damaging(0.977) TCGA-W3-A825-06 12 86373905 86373905 G A MGAT4C Missense_Mutation p.S200F 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 12 88383104 88383104 C T C12orf50 Missense_Mutation p.D213N 0.36 tolerated(0.32) benign(0.085) TCGA-W3-A825-06 12 95486479 95486479 C T FGD6 Missense_Mutation p.G1248E 0.34 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 13 102227816 102227816 G A ITGBL1 Missense_Mutation p.G169R 0.46 deleterious(0.01) benign(0.374) TCGA-W3-A825-06 13 103257271 103257271 G A TPP2 Silent p.K98K 0.40 TCGA-W3-A825-06 13 103698437 103698437 G A SLC10A2 3'UTR 0.38 TCGA-W3-A825-06 13 108518894 108518894 G A FAM155A Silent p.I17I 0.38 TCGA-W3-A825-06 13 114005239 114005239 G A GRTP1 Silent p.D130D 0.65 TCGA-W3-A825-06 13 21721600 21721600 C T SAP18 3'UTR 0.31 TCGA-W3-A825-06 13 23909398 23909398 G A SACS Missense_Mutation p.L2873F 0.36 probably_damaging(0.997) TCGA-W3-A825-06 13 25275000 25275000 C T ATP12A Silent p.I613I 0.31 TCGA-W3-A825-06 13 25743840 25743840 G A AMER2 Missense_Mutation p.P640S 0.44 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 13 25895062 25895062 T C NUPL1 Missense_Mutation p.F261S 0.33 deleterious(0) probably_damaging(0.982) TCGA-W3-A825-06 13 27256930 27256930 C T WASF3 Silent p.L390L 0.40 TCGA-W3-A825-06 13 28895656 28895656 C T FLT1 Missense_Mutation p.D1040N 0.42 deleterious(0) probably_damaging(0.971) TCGA-W3-A825-06 13 29275643 29275643 T G SLC46A3 Silent p.S459S 0.26 TCGA-W3-A825-06 13 29599064 29599064 G A MTUS2 Missense_Mutation p.E87K 0.20 deleterious(0) possibly_damaging(0.453) TCGA-W3-A825-06 13 29600797 29600797 C T MTUS2 Silent p.A664A 0.32 TCGA-W3-A825-06 13 32914118 32914118 G A BRCA2 Missense_Mutation p.E1876K 0.44 tolerated(0.05) benign(0.017) TCGA-W3-A825-06 13 33634919 33634919 G A KL Missense_Mutation p.R568K 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-W3-A825-06 13 36241656 36241656 C T NBEA Silent p.F2849F 0.43 TCGA-W3-A825-06 13 36743050 36743050 C T SOHLH2 3'UTR 0.32 TCGA-W3-A825-06 13 38357213 38357213 G A TRPC4 Silent p.I86I 0.33 TCGA-W3-A825-06 13 38357259 38357259 C T TRPC4 Missense_Mutation p.R71K 0.49 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 13 48835489 48835489 C T ITM2B 3'UTR 0.35 TCGA-W3-A825-06 13 49281222 49281222 C T CYSLTR2 Missense_Mutation p.T90M 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A825-06 13 50050889 50050889 C T SETDB2 Missense_Mutation p.R207C 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-W3-A825-06 13 50285155 50285155 G A KPNA3 Missense_Mutation p.L259F 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 13 50502075 50502075 G A SPRYD7 Missense_Mutation p.P124S 0.50 deleterious(0.01) possibly_damaging(0.893) TCGA-W3-A825-06 13 60240757 60240757 G A DIAPH3 Silent p.P1181P 0.34 TCGA-W3-A825-06 13 60240758 60240758 G A DIAPH3 Missense_Mutation p.P1181L 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-A825-06 13 61987930 61987930 G A PCDH20 Missense_Mutation p.P101L 0.47 tolerated_low_confidence(0.37) benign(0) TCGA-W3-A825-06 13 61987931 61987931 G A PCDH20 Missense_Mutation p.P101S 0.41 tolerated_low_confidence(0.5) benign(0.002) TCGA-W3-A825-06 13 67205452 67205452 C T PCDH9 Missense_Mutation p.G1077E 0.38 tolerated(0.4) benign(0.368) TCGA-W3-A825-06 13 72204769 72204769 A G DACH1 Silent p.L351L 0.43 TCGA-W3-A825-06 13 78171689 78171689 G A SCEL Silent p.L254L 0.32 TCGA-W3-A825-06 13 78492478 78492478 C T EDNRB Silent p.T167T 0.39 TCGA-W3-A825-06 13 88327959 88327959 G A SLITRK5 Missense_Mutation p.G106R 0.35 deleterious(0.03) possibly_damaging(0.889) TCGA-W3-A825-06 13 92560225 92560225 G A GPC5 Missense_Mutation p.A439T 0.47 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 14 100380936 100380936 C T EML1 Missense_Mutation p.H571Y 0.14 deleterious(0) probably_damaging(0.935) TCGA-W3-A825-06 14 102792645 102792645 C T ZNF839 Silent p.S204S 0.36 TCGA-W3-A825-06 14 104573539 104573539 G A ASPG Silent p.V430V 0.49 TCGA-W3-A825-06 14 105414866 105414866 C T AHNAK2 Missense_Mutation p.D2308N 0.21 benign(0.274) TCGA-W3-A825-06 14 106962960 106962960 C T IGHV1-45 Missense_Mutation p.E108K 0.49 deleterious(0.04) benign(0.411) TCGA-W3-A825-06 14 20502513 20502513 G A OR4K13 Silent p.I135I 0.28 TCGA-W3-A825-06 14 20586123 20586123 C T OR4K17 Silent p.H186H 0.38 TCGA-W3-A825-06 14 20666099 20666099 C T OR11G2 Missense_Mutation p.S202F 0.34 deleterious(0.02) probably_damaging(0.992) TCGA-W3-A825-06 14 20666271 20666271 C T OR11G2 Silent p.V259V 0.31 TCGA-W3-A825-06 14 21024994 21024994 G A RNASE9 Missense_Mutation p.H84Y 0.38 tolerated(0.07) benign(0.005) TCGA-W3-A825-06 14 21250241 21250241 C T RNASE6 Missense_Mutation p.A128V 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 14 22592155 22592155 C T TRAV26-1 Silent p.I80I 0.52 TCGA-W3-A825-06 14 23242895 23242895 C A SLC7A7 Missense_Mutation p.C487F 0.31 tolerated(0.19) benign(0.002) TCGA-W3-A825-06 14 23242896 23242896 A T SLC7A7 Missense_Mutation p.C487S 0.31 deleterious(0.03) benign(0.003) TCGA-W3-A825-06 14 26917324 26917324 T C NOVA1 Missense_Mutation p.I455M 0.41 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 14 37283134 37283134 G A SLC25A21 Silent p.F64F 0.28 TCGA-W3-A825-06 14 37344201 37344201 C T SLC25A21 Missense_Mutation p.E27K 0.22 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 14 52534748 52534748 C T NID2 Missense_Mutation p.R121Q 0.29 tolerated(0.52) benign(0.006) TCGA-W3-A825-06 14 56084766 56084766 G C KTN1 Missense_Mutation p.R249T 0.33 deleterious(0) probably_damaging(0.979) TCGA-W3-A825-06 14 57268715 57268715 G A OTX2 Missense_Mutation p.S211L 0.32 deleterious(0.01) possibly_damaging(0.686) TCGA-W3-A825-06 14 62188491 62188491 C G HIF1A Missense_Mutation p.T160S 0.30 tolerated(0.05) benign(0.377) TCGA-W3-A825-06 14 64518328 64518328 C T SYNE2 Missense_Mutation p.S2566F 0.12 possibly_damaging(0.718) TCGA-W3-A825-06 14 67849183 67849183 C T EIF2S1 Missense_Mutation p.P233L 0.49 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 14 70515727 70515727 C T SLC8A3 Missense_Mutation p.E722K 0.29 tolerated(0.07) probably_damaging(0.926) TCGA-W3-A825-06 14 72926360 72926360 G A RGS6 Silent p.S121S 0.38 TCGA-W3-A825-06 14 77723052 77723052 C T TMEM63C Nonsense_Mutation p.Q802* 0.50 TCGA-W3-A825-06 14 77948681 77948681 C T ISM2 Silent p.K319K 0.30 TCGA-W3-A825-06 14 81244255 81244255 G A CEP128 Nonsense_Mutation p.Q783* 0.29 TCGA-W3-A825-06 14 81862427 81862427 C T STON2 Missense_Mutation p.D62N 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.592) TCGA-W3-A825-06 14 88789161 88789161 G A KCNK10 5'UTR 0.43 TCGA-W3-A825-06 14 88938644 88938644 C T PTPN21 Missense_Mutation p.E939K 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-W3-A825-06 14 92170911 92170911 C T CATSPERB Missense_Mutation p.D201N 0.26 tolerated(1) benign(0.003) TCGA-W3-A825-06 14 94046618 94046618 G A UNC79 Missense_Mutation p.E676K 0.43 tolerated(0.1) benign(0.004) TCGA-W3-A825-06 14 94756588 94756588 C T SERPINA10 Missense_Mutation p.G115R 0.27 deleterious(0) probably_damaging(0.987) TCGA-W3-A825-06 14 95054134 95054134 C T SERPINA5 Silent p.F145F 0.18 TCGA-W3-A825-06 14 95577716 95577716 C A DICER1 Nonsense_Mutation p.E732* 0.27 TCGA-W3-A825-06 15 101109765 101109765 G A LINS Missense_Mutation p.S651F 0.37 tolerated(0.06) benign(0.126) TCGA-W3-A825-06 15 22369378 22369378 C T OR4M2 Missense_Mutation p.S268F 0.28 deleterious(0.01) benign(0.037) TCGA-W3-A825-06 15 25213205 25213205 G A SNRPN 5'UTR 0.46 TCGA-W3-A825-06 15 25427598 25427598 G A SNORD115-6 3'Flank 0.33 TCGA-W3-A825-06 15 28508189 28508189 C A HERC2 Missense_Mutation p.S666I 0.34 probably_damaging(0.99) TCGA-W3-A825-06 15 28518106 28518106 G A HERC2 Missense_Mutation p.P282L 0.29 probably_damaging(0.963) TCGA-W3-A825-06 15 31334308 31334308 T C TRPM1 Missense_Mutation p.K662E 0.36 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 15 34654809 34654809 G A LPCAT4 Silent p.T283T 0.40 TCGA-W3-A825-06 15 35236602 35236602 G A AQR Missense_Mutation p.P120S 0.43 tolerated(0.29) benign(0.008) TCGA-W3-A825-06 15 39882032 39882032 G A THBS1 Silent p.T651T 0.46 TCGA-W3-A825-06 15 39882033 39882033 G A THBS1 Missense_Mutation p.D652N 0.44 tolerated(0.14) probably_damaging(0.985) TCGA-W3-A825-06 15 40500894 40500894 C T BUB1B Missense_Mutation p.S689F 0.33 deleterious(0.04) possibly_damaging(0.726) TCGA-W3-A825-06 15 40914431 40914431 C T CASC5 Missense_Mutation p.P683S 0.35 tolerated(0.15) benign(0.022) TCGA-W3-A825-06 15 41601919 41601919 G A OIP5 3'UTR 0.38 TCGA-W3-A825-06 15 41796388 41796388 C T LTK Missense_Mutation p.E801K 0.29 deleterious_low_confidence(0) benign(0.197) TCGA-W3-A825-06 15 44116763 44116763 G T MFAP1 Nonsense_Mutation p.S2* 0.53 TCGA-W3-A825-06 15 44116765 44116765 C A MFAP1 Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0.03) benign(0.019) TCGA-W3-A825-06 15 45401719 45401719 C T DUOX2 Intron 0.41 TCGA-W3-A825-06 15 45706793 45706793 C T SPATA5L1 Missense_Mutation p.P487S 0.38 deleterious(0.01) possibly_damaging(0.54) TCGA-W3-A825-06 15 48797324 48797324 G A FBN1 Missense_Mutation p.P620S 0.39 benign(0.003) TCGA-W3-A825-06 15 49776643 49776643 G A FGF7 Missense_Mutation p.G176E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 15 50916394 50916394 G A TRPM7 Missense_Mutation p.T470I 0.38 deleterious(0.01) probably_damaging(0.915) TCGA-W3-A825-06 15 51975610 51975610 G A SCG3 Missense_Mutation p.G126R 0.36 deleterious_low_confidence(0.03) probably_damaging(0.948) TCGA-W3-A825-06 15 55912382 55912382 G A PRTG Missense_Mutation p.S1094F 0.39 deleterious_low_confidence(0.01) benign(0.429) TCGA-W3-A825-06 15 59359189 59359189 C T RNF111 Silent p.S531S 0.37 TCGA-W3-A825-06 15 62942367 62942367 T G TLN2 Missense_Mutation p.M74R 0.39 deleterious(0.04) possibly_damaging(0.776) TCGA-W3-A825-06 15 64792086 64792086 C T ZNF609 Silent p.S156S 0.45 TCGA-W3-A825-06 15 65627682 65627682 G A IGDCC3 Missense_Mutation p.A211V 0.36 deleterious(0) possibly_damaging(0.812) TCGA-W3-A825-06 15 69222934 69222934 C T SPESP1 5'UTR 0.45 TCGA-W3-A825-06 15 72691002 72691002 C T TMEM202 Silent p.V30V 0.36 TCGA-W3-A825-06 15 73866048 73866048 G A NPTN Silent p.P265P 0.39 TCGA-W3-A825-06 15 73866049 73866049 G C NPTN Missense_Mutation p.P265R 0.39 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 15 75109014 75109014 C T LMAN1L Silent p.I160I 0.38 TCGA-W3-A825-06 15 77425554 77425554 G A PEAK1 Silent p.I1290I 0.36 TCGA-W3-A825-06 15 79058574 79058574 G A ADAMTS7 Nonsense_Mutation p.R1227* 0.21 TCGA-W3-A825-06 15 79058575 79058575 G A ADAMTS7 Silent p.G1226G 0.20 TCGA-W3-A825-06 15 79220055 79220055 G A CTSH Silent p.I233I 0.35 TCGA-W3-A825-06 15 79339183 79339183 G A RASGRF1 Silent p.I261I 0.34 TCGA-W3-A825-06 15 81650780 81650780 G A TMC3 Missense_Mutation p.S188L 0.23 tolerated(0.07) benign(0.004) TCGA-W3-A825-06 15 81654598 81654598 G A TMC3 Silent p.I119I 0.50 TCGA-W3-A825-06 15 85147090 85147090 C T ZSCAN2 5'UTR 0.31 TCGA-W3-A825-06 15 85147091 85147091 C T ZSCAN2 5'UTR 0.33 TCGA-W3-A825-06 15 85478748 85478748 C T SLC28A1 Missense_Mutation p.S527F 0.42 deleterious(0) probably_damaging(0.997) TCGA-W3-A825-06 15 86940597 86940597 G A AGBL1 Missense_Mutation p.R746Q 0.38 deleterious(0.02) probably_damaging(0.966) TCGA-W3-A825-06 15 88670436 88670436 G A NTRK3 Missense_Mutation p.P417L 0.22 tolerated(0.13) benign(0.005) TCGA-W3-A825-06 15 89826380 89826380 C T FANCI Nonsense_Mutation p.R533* 0.40 TCGA-W3-A825-06 15 91769874 91769874 C T SV2B Silent p.F127F 0.30 TCGA-W3-A825-06 15 92647685 92647685 G A SLCO3A1 Missense_Mutation p.E308K 0.40 tolerated(0.36) benign(0.207) TCGA-W3-A825-06 15 92977587 92977587 C T ST8SIA2 Missense_Mutation p.T91M 0.21 probably_damaging(0.993) TCGA-W3-A825-06 15 92981832 92981832 C T ST8SIA2 Silent p.F180F 0.35 TCGA-W3-A825-06 15 95022207 95022207 G A MCTP2 Missense_Mutation p.E861K 0.40 deleterious(0.01) possibly_damaging(0.806) TCGA-W3-A825-06 16 10861837 10861837 C T NUBP1 Silent p.F284F 0.52 TCGA-W3-A825-06 16 11016321 11016321 G A CIITA Silent p.R1097R 0.28 TCGA-W3-A825-06 16 1573601 1573601 G A IFT140 Missense_Mutation p.A1124V 0.11 tolerated(0.1) benign(0.009) TCGA-W3-A825-06 16 19474687 19474687 C T TMC5 Missense_Mutation p.R412W 0.42 deleterious(0) possibly_damaging(0.462) TCGA-W3-A825-06 16 20648554 20648554 G A ACSM1 Intron 0.13 TCGA-W3-A825-06 16 20696520 20696520 C T ACSM1 Missense_Mutation p.R133Q 0.64 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A825-06 16 21011588 21011588 G A DNAH3 Missense_Mutation p.L2127F 0.15 deleterious(0.01) benign(0.049) TCGA-W3-A825-06 16 2131776 2131776 C T TSC2 Missense_Mutation p.P1264L 0.57 tolerated_low_confidence(0.31) benign(0.017) TCGA-W3-A825-06 16 2167558 2167558 C T PKD1 Nonsense_Mutation p.W439* 0.47 TCGA-W3-A825-06 16 2167559 2167559 C T PKD1 Nonsense_Mutation p.W439* 0.47 TCGA-W3-A825-06 16 27518431 27518431 G A GTF3C1 Missense_Mutation p.S430F 0.44 deleterious(0) probably_damaging(0.987) TCGA-W3-A825-06 16 2815141 2815141 C T SRRM2 Missense_Mutation p.R1538C 0.60 unknown(0) TCGA-W3-A825-06 16 28997748 28997748 C T LAT Silent p.S133S 0.40 TCGA-W3-A825-06 16 30409898 30409898 C T ZNF48 Missense_Mutation p.P443S 0.22 tolerated(0.42) probably_damaging(0.996) TCGA-W3-A825-06 16 30410322 30410322 C T ZNF48 Missense_Mutation p.S584F 0.23 deleterious(0) possibly_damaging(0.795) TCGA-W3-A825-06 16 3078445 3078445 G A CCDC64B Silent p.L421L 0.30 TCGA-W3-A825-06 16 31089443 31089443 G A ZNF646 Missense_Mutation p.G600R 0.11 tolerated(0.24) possibly_damaging(0.466) TCGA-W3-A825-06 16 31422172 31422172 G A ITGAD Silent p.R443R 0.44 TCGA-W3-A825-06 16 3486449 3486449 C T ZNF597 Missense_Mutation p.R417Q 0.19 tolerated(0.38) benign(0.126) TCGA-W3-A825-06 16 48149457 48149457 C T ABCC12 Missense_Mutation p.D620N 0.42 tolerated(0.94) benign(0.034) TCGA-W3-A825-06 16 5058571 5058571 C T SEC14L5 Silent p.I574I 0.45 TCGA-W3-A825-06 16 5097914 5097914 G A C16orf89 Missense_Mutation p.S307L 0.53 tolerated(1) benign(0) TCGA-W3-A825-06 16 51174093 51174093 C T SALL1 Silent p.L680L 0.16 TCGA-W3-A825-06 16 51174942 51174942 G A SALL1 Silent p.S397S 0.21 TCGA-W3-A825-06 16 56377722 56377722 G A GNAO1 Missense_Mutation p.E309K 0.36 tolerated(0.44) possibly_damaging(0.647) TCGA-W3-A825-06 16 56377915 56377915 C T GNAO1 3'UTR 0.41 TCGA-W3-A825-06 16 56691901 56691901 C T MT1F 5'UTR 0.33 TCGA-W3-A825-06 16 56936404 56936404 C T SLC12A3 Missense_Mutation p.T956M 0.47 tolerated(0.08) benign(0.221) TCGA-W3-A825-06 16 56969144 56969144 C T HERPUD1 Intron 0.26 TCGA-W3-A825-06 16 57188268 57188268 G A FAM192A Silent p.T233T 0.50 TCGA-W3-A825-06 16 58030658 58030658 G A ZNF319 Silent p.H504H 0.43 TCGA-W3-A825-06 16 58071447 58071447 C T MMP15 Silent p.I78I 0.23 TCGA-W3-A825-06 16 66434847 66434847 G A CDH5 Missense_Mutation p.D589N 0.47 tolerated(0.23) benign(0.063) TCGA-W3-A825-06 16 66967543 66967543 G A FAM96B Silent p.L108L 0.57 TCGA-W3-A825-06 16 67682598 67682598 G A RLTPR Missense_Mutation p.D484N 0.50 tolerated(0.09) benign(0.007) TCGA-W3-A825-06 16 67860348 67860348 G A TSNAXIP1 Silent p.G374G 0.20 TCGA-W3-A825-06 16 701912 701912 C T WDR90 Missense_Mutation p.P309L 0.20 tolerated(0.21) benign(0.001) TCGA-W3-A825-06 16 70906005 70906005 G A HYDIN Missense_Mutation p.H3676Y 0.52 possibly_damaging(0.607) TCGA-W3-A825-06 16 71218876 71218876 G A HYDIN Silent p.F51F 0.33 TCGA-W3-A825-06 16 77850940 77850940 G A VAT1L Missense_Mutation p.G119E 0.55 tolerated(0.22) possibly_damaging(0.609) TCGA-W3-A825-06 16 81142857 81142857 A T RNU6-1191P 5'Flank 0.24 TCGA-W3-A825-06 16 82033667 82033667 G A SDR42E1 Silent p.F77F 0.48 TCGA-W3-A825-06 16 83711878 83711878 C T CDH13 Silent p.L497L 0.22 TCGA-W3-A825-06 16 84485598 84485598 C T ATP2C2 Missense_Mutation p.P578S 0.55 deleterious(0) probably_damaging(0.944) TCGA-W3-A825-06 16 85100937 85100937 C T KIAA0513 Missense_Mutation p.T87I 0.48 tolerated(0.13) benign(0.016) TCGA-W3-A825-06 16 8993545 8993545 G A USP7 Silent p.R793R 0.54 TCGA-W3-A825-06 17 10215946 10215946 T C MYH13 Missense_Mutation p.E1437G 0.19 tolerated(0.12) benign(0.371) TCGA-W3-A825-06 17 10215947 10215947 C T MYH13 Missense_Mutation p.E1437K 0.24 deleterious(0.01) benign(0.371) TCGA-W3-A825-06 17 10215948 10215948 C T MYH13 Silent p.L1436L 0.25 TCGA-W3-A825-06 17 10304276 10304276 C T MYH8 Silent p.K1085K 0.47 TCGA-W3-A825-06 17 10307703 10307703 C T MYH8 Missense_Mutation p.E878K 0.41 deleterious(0) benign(0.371) TCGA-W3-A825-06 17 10426893 10426893 C T MYH2 Missense_Mutation p.D1798N 0.39 deleterious(0.03) benign(0.35) TCGA-W3-A825-06 17 12655875 12655875 C T MYOCD Missense_Mutation p.P424S 0.36 tolerated(0.08) probably_damaging(1) TCGA-W3-A825-06 17 12666713 12666713 T G MYOCD Missense_Mutation p.L905V 0.36 tolerated(0.09) probably_damaging(0.999) TCGA-W3-A825-06 17 13400075 13400075 G A HS3ST3A1 Silent p.F220F 0.25 TCGA-W3-A825-06 17 15518981 15518981 G A RP11-385D13.1 Silent p.F526F 0.21 TCGA-W3-A825-06 17 16330065 16330065 C T TRPV2 Silent p.P375P 0.27 TCGA-W3-A825-06 17 1649038 1649038 G A SERPINF2 Missense_Mutation p.G68R 0.49 tolerated(0.13) benign(0.02) TCGA-W3-A825-06 17 1649039 1649039 G A SERPINF2 Missense_Mutation p.G68E 0.49 tolerated(0.28) benign(0.014) TCGA-W3-A825-06 17 16612200 16612200 G A CCDC144A Missense_Mutation p.E277K 0.36 tolerated(0.5) benign(0.014) TCGA-W3-A825-06 17 16701795 16701795 G A CCDC144A 3'UTR 0.12 TCGA-W3-A825-06 17 18025537 18025537 C T MYO15A Silent p.P1141P 0.52 TCGA-W3-A825-06 17 18058475 18058475 G A MYO15A Missense_Mutation p.R2759Q 0.50 unknown(0) TCGA-W3-A825-06 17 18539847 18539847 C T TBC1D28 Silent p.G187G 0.39 TCGA-W3-A825-06 17 21319155 21319155 C T KCNJ12 Silent p.I167I 0.06 TCGA-W3-A825-06 17 21731379 21731379 G A UBBP4 Intron 0.31 TCGA-W3-A825-06 17 27437624 27437624 G A MYO18A Silent p.L973L 0.15 TCGA-W3-A825-06 17 3119692 3119692 C T OR1A1 Missense_Mutation p.R260C 0.36 tolerated(0.44) benign(0.159) TCGA-W3-A825-06 17 33588077 33588077 C T SLFN5 Missense_Mutation p.S367L 0.36 tolerated(1) benign(0) TCGA-W3-A825-06 17 33749827 33749827 C T SLFN12 Missense_Mutation p.G74E 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 17 36099522 36099522 G A HNF1B Silent p.S151S 0.26 TCGA-W3-A825-06 17 36099523 36099523 G A HNF1B Missense_Mutation p.S151F 0.26 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 17 36485251 36485251 C T GPR179 Missense_Mutation p.D1401N 0.30 tolerated(0.2) benign(0.044) TCGA-W3-A825-06 17 37792160 37792160 C T PPP1R1B 3'UTR 0.31 TCGA-W3-A825-06 17 3783691 3783691 C T CAMKK1 Missense_Mutation p.E287K 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 17 3783692 3783692 C T CAMKK1 Silent p.S286S 0.31 TCGA-W3-A825-06 17 38548580 38548580 G A TOP2A Silent p.F1326F 0.44 TCGA-W3-A825-06 17 38859837 38859837 C T KRT24 Missense_Mutation p.G37S 0.32 tolerated(0.07) unknown(0) TCGA-W3-A825-06 17 38926343 38926343 C T KRT26 Missense_Mutation p.G238E 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 17 38926344 38926344 C T KRT26 Missense_Mutation p.G238R 0.31 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 17 38953224 38953224 C T KRT28 Missense_Mutation p.E308K 0.34 deleterious(0.01) probably_damaging(0.939) TCGA-W3-A825-06 17 39324359 39324359 C T KRTAP4-3 Silent p.E22E 0.57 TCGA-W3-A825-06 17 39412035 39412035 C T KRTAP9-9 Missense_Mutation p.S133F 0.38 deleterious(0) possibly_damaging(0.795) TCGA-W3-A825-06 17 39553639 39553639 G T KRT31 Silent p.S51S 0.45 TCGA-W3-A825-06 17 40460254 40460254 C T STAT5A Silent p.S655S 0.42 TCGA-W3-A825-06 17 41004801 41004801 C T AOC3 Missense_Mutation p.P481S 0.41 tolerated(0.26) probably_damaging(0.993) TCGA-W3-A825-06 17 41365265 41365265 C T TMEM106A Missense_Mutation p.P69S 0.25 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 17 42290604 42290604 C T UBTF Missense_Mutation p.R174Q 0.46 tolerated(0.32) benign(0.041) TCGA-W3-A825-06 17 43364175 43364175 G A MAP3K14 RNA 0.24 TCGA-W3-A825-06 17 43910844 43910844 C T CRHR1 Silent p.I319I 0.35 TCGA-W3-A825-06 17 44249101 44249101 T A KANSL1 Missense_Mutation p.N137Y 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-W3-A825-06 17 47284111 47284111 C T GNGT2 3'UTR 0.39 TCGA-W3-A825-06 17 48678508 48678508 G A CACNA1G Silent p.E1296E 0.40 TCGA-W3-A825-06 17 4925851 4925851 C T KIF1C Silent p.A825A 0.60 TCGA-W3-A825-06 17 4996114 4996114 C T ZFP3 Missense_Mutation p.H439Y 0.30 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 17 50235119 50235119 G A CA10 Missense_Mutation p.L10F 0.39 tolerated(0.14) benign(0.014) TCGA-W3-A825-06 17 5037278 5037278 C T USP6 Nonsense_Mutation p.R161* 0.42 TCGA-W3-A825-06 17 55184320 55184320 C T AKAP1 Missense_Mutation p.P499S 0.38 tolerated(0.83) benign(0.009) TCGA-W3-A825-06 17 61972573 61972573 C T CSH1 Missense_Mutation p.E155K 0.40 tolerated(0.05) benign(0.091) TCGA-W3-A825-06 17 62856424 62856424 G A LRRC37A3 Silent p.S1280S 0.32 TCGA-W3-A825-06 17 63149605 63149605 C T RGS9 Silent p.V41V 0.38 TCGA-W3-A825-06 17 63156677 63156677 G A RGS9 Silent p.Q112Q 0.38 TCGA-W3-A825-06 17 67537958 67537958 C T MAP2K6 3'UTR 0.33 TCGA-W3-A825-06 17 6978476 6978476 G A CLEC10A Missense_Mutation p.A283V 0.34 tolerated(0.07) possibly_damaging(0.68) TCGA-W3-A825-06 17 72310382 72310382 C T DNAI2 3'UTR 0.37 TCGA-W3-A825-06 17 72927012 72927012 G A OTOP2 Missense_Mutation p.G428R 0.43 tolerated(0.49) benign(0.044) TCGA-W3-A825-06 17 7416431 7416431 C T POLR2A Silent p.S1616S 0.36 TCGA-W3-A825-06 17 74474998 74474998 G A RHBDF2 Silent p.L217L 0.34 TCGA-W3-A825-06 17 76488836 76488836 G A DNAH17 Silent p.S2126S 0.38 TCGA-W3-A825-06 17 7708619 7708619 G A DNAH2 Missense_Mutation p.G3117E 0.41 probably_damaging(0.996) TCGA-W3-A825-06 17 78113895 78113895 G A EIF4A3 Silent p.A139A 0.41 TCGA-W3-A825-06 17 79094807 79094807 T C AATK Missense_Mutation p.T977A 0.56 tolerated(0.11) benign(0.031) TCGA-W3-A825-06 17 80851432 80851432 C T TBCD Missense_Mutation p.P525S 0.50 deleterious(0) probably_damaging(0.934) TCGA-W3-A825-06 17 9515717 9515717 C T WDR16 Missense_Mutation p.R316C 0.33 tolerated(0.08) benign(0.033) TCGA-W3-A825-06 17 9729521 9729521 C T GLP2R Silent p.A47A 0.43 TCGA-W3-A825-06 18 10696420 10696420 G A PIEZO2 Silent p.I2202I 0.45 TCGA-W3-A825-06 18 215447 215447 G A THOC1 Silent p.L554L 0.17 TCGA-W3-A825-06 18 21759734 21759734 G C OSBPL1A Missense_Mutation p.N626K 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-W3-A825-06 18 23854747 23854747 A T TAF4B Nonsense_Mutation p.K240* 0.38 TCGA-W3-A825-06 18 25572657 25572657 C T CDH2 Missense_Mutation p.D436N 0.29 tolerated(0.05) probably_damaging(1) TCGA-W3-A825-06 18 28588365 28588365 C T DSC3 Missense_Mutation p.D464N 0.32 tolerated(0.4) benign(0.055) TCGA-W3-A825-06 18 28956808 28956808 C T DSG4 5'Flank 0.31 TCGA-W3-A825-06 18 28968963 28968963 G A DSG4 Missense_Mutation p.E167K 0.27 deleterious(0) probably_damaging(0.981) TCGA-W3-A825-06 18 29038457 29038457 G A DSG3 Missense_Mutation p.G89E 0.27 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 18 29115288 29115288 G A DSG2 Missense_Mutation p.E446K 0.37 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 18 31263523 31263523 G A ASXL3 Silent p.V290V 0.19 TCGA-W3-A825-06 18 3129432 3129432 G A MYOM1 Silent p.A864A 0.39 TCGA-W3-A825-06 18 31537398 31537398 G A NOL4 Silent p.I440I 0.30 TCGA-W3-A825-06 18 44426692 44426692 G T PIAS2 Missense_Mutation p.S280Y 0.26 deleterious(0) benign(0.072) TCGA-W3-A825-06 18 52555294 52555294 C T RAB27B Missense_Mutation p.P138S 0.31 tolerated(0.11) benign(0) TCGA-W3-A825-06 18 57103301 57103301 C T CCBE1 Missense_Mutation p.E354K 0.28 tolerated(0.05) benign(0.235) TCGA-W3-A825-06 18 59483741 59483741 G A RNF152 5'UTR 0.40 TCGA-W3-A825-06 18 61322864 61322864 C T SERPINB3 3'UTR 0.31 TCGA-W3-A825-06 18 61324188 61324188 T A SERPINB3 Missense_Mutation p.Q215H 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-W3-A825-06 18 61387292 61387292 C T SERPINB11 Missense_Mutation p.S174F 0.33 deleterious(0) possibly_damaging(0.514) TCGA-W3-A825-06 18 61465874 61465874 G A SERPINB7 Missense_Mutation p.S164N 0.27 tolerated(0.09) probably_damaging(0.953) TCGA-W3-A825-06 18 662237 662237 C T TYMS Missense_Mutation p.S124F 0.34 tolerated(0.12) benign(0.007) TCGA-W3-A825-06 18 77211041 77211041 G A NFATC1 Silent p.R546R 0.41 TCGA-W3-A825-06 19 10071003 10071003 G A COL5A3 3'UTR 0.38 TCGA-W3-A825-06 19 10251810 10251810 G A DNMT1 Missense_Mutation p.P1122L 0.44 tolerated(0.48) benign(0.002) TCGA-W3-A825-06 19 10506189 10506189 C T CDC37 Missense_Mutation p.E137K 0.38 tolerated(0.33) benign(0.414) TCGA-W3-A825-06 19 10600034 10600034 G A KEAP1 Silent p.V514V 0.47 TCGA-W3-A825-06 19 10795044 10795044 C T ILF3 Intron 0.40 TCGA-W3-A825-06 19 10887813 10887813 C T DNM2 Silent p.V203V 0.31 TCGA-W3-A825-06 19 12061437 12061437 A G ZNF700 3'UTR 0.31 TCGA-W3-A825-06 19 12429954 12429954 G A ZNF563 Silent p.S295S 0.46 TCGA-W3-A825-06 19 14000821 14000821 G T C19orf57 Missense_Mutation p.A283D 0.13 deleterious(0.01) benign(0.064) TCGA-W3-A825-06 19 1430254 1430254 C T DAZAP1 Missense_Mutation p.A255V 0.47 deleterious(0.03) unknown(0) TCGA-W3-A825-06 19 16686957 16686957 C T MED26 Missense_Mutation p.G562R 0.70 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 19 17571379 17571379 G A NXNL1 Silent p.F100F 0.72 TCGA-W3-A825-06 19 17991758 17991758 C T SLC5A5 Missense_Mutation p.L352F 0.59 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 19 23937641 23937641 C T ZNF681 Missense_Mutation p.M70I 0.62 tolerated(0.1) benign(0.107) TCGA-W3-A825-06 19 2852908 2852908 A G ZNF555 Missense_Mutation p.K282R 0.41 tolerated(0.08) probably_damaging(0.985) TCGA-W3-A825-06 19 2994913 2994913 C T TLE6 Missense_Mutation p.P544S 0.46 tolerated(1) benign(0.162) TCGA-W3-A825-06 19 31039312 31039312 C T ZNF536 Missense_Mutation p.S929F 0.68 deleterious(0) probably_damaging(0.996) TCGA-W3-A825-06 19 3115012 3115012 C T GNA11 Missense_Mutation p.R183C 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 19 3157866 3157866 C T GNA15 Silent p.F295F 0.37 TCGA-W3-A825-06 19 31768503 31768503 G A TSHZ3 Silent p.H732H 0.76 TCGA-W3-A825-06 19 33077854 33077854 T C PDCD5 Intron 0.75 TCGA-W3-A825-06 19 33353424 33353424 C T SLC7A9 Missense_Mutation p.A183T 0.69 deleterious(0.04) benign(0.167) TCGA-W3-A825-06 19 33517460 33517460 C T RHPN2 Silent p.K88K 0.09 TCGA-W3-A825-06 19 33703352 33703352 C T SLC7A10 Splice_Site p.X212_splice 0.78 TCGA-W3-A825-06 19 3494083 3494083 G A DOHH Silent p.I98I 0.36 TCGA-W3-A825-06 19 35978255 35978255 C T KRTDAP 3'UTR 0.71 TCGA-W3-A825-06 19 3651838 3651838 G A PIP5K1C Silent p.I371I 0.43 TCGA-W3-A825-06 19 38161021 38161021 T A ZNF781 Missense_Mutation p.N10I 0.69 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-W3-A825-06 19 38989832 38989832 T G RYR1 Missense_Mutation p.C2326G 0.65 benign(0.022) TCGA-W3-A825-06 19 40392563 40392563 C T FCGBP Silent p.E2647E 0.27 TCGA-W3-A825-06 19 44932908 44932908 G A ZNF229 Missense_Mutation p.P683L 0.67 deleterious(0.02) probably_damaging(0.984) TCGA-W3-A825-06 19 44932909 44932909 G A ZNF229 Missense_Mutation p.P683S 0.66 deleterious(0) probably_damaging(0.961) TCGA-W3-A825-06 19 4529049 4529049 G A PLIN5 Intron 0.35 TCGA-W3-A825-06 19 45811750 45811750 C T CKM Missense_Mutation p.E232K 0.67 deleterious(0) probably_damaging(0.995) TCGA-W3-A825-06 19 4902869 4902869 C T ARRDC5 Missense_Mutation p.R4K 0.36 tolerated_low_confidence(1) benign(0) TCGA-W3-A825-06 19 49937278 49937278 C T SLC17A7 Silent p.A221A 0.67 TCGA-W3-A825-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.71 TCGA-W3-A825-06 19 51165577 51165577 C T SHANK1 Missense_Mutation p.G2044E 0.60 unknown(0) TCGA-W3-A825-06 19 51647784 51647784 G A SIGLEC7 Missense_Mutation p.M185I 0.72 tolerated(0.29) benign(0.004) TCGA-W3-A825-06 19 51958704 51958704 G A SIGLEC8 Missense_Mutation p.S340F 0.47 deleterious(0.03) probably_damaging(0.926) TCGA-W3-A825-06 19 53668079 53668079 G A ZNF665 Missense_Mutation p.S555L 0.40 deleterious(0.01) possibly_damaging(0.54) TCGA-W3-A825-06 19 53668122 53668122 G A ZNF665 Missense_Mutation p.P541S 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-W3-A825-06 19 53740151 53740151 G A ZNF677 3'UTR 0.43 TCGA-W3-A825-06 19 53770550 53770550 G A VN1R4 Silent p.A123A 0.26 TCGA-W3-A825-06 19 54081122 54081122 G A ZNF331 Silent p.A436A 0.40 TCGA-W3-A825-06 19 54257304 54257304 C T MIR527 RNA 0.38 TCGA-W3-A825-06 19 54416115 54416115 C T CACNG7 Silent p.T10T 0.38 TCGA-W3-A825-06 19 54418616 54418616 C T CACNG7 Intron 0.44 TCGA-W3-A825-06 19 54745754 54745754 C T LILRA6 Missense_Mutation p.G119E 0.32 deleterious(0.02) probably_damaging(0.926) TCGA-W3-A825-06 19 54848916 54848916 G A LILRA4 Missense_Mutation p.P236L 0.30 tolerated(0.08) benign(0.118) TCGA-W3-A825-06 19 55106215 55106215 C T LILRA1 Silent p.I52I 0.41 TCGA-W3-A825-06 19 55148244 55148244 G A LILRB1 Missense_Mutation p.R625K 0.35 deleterious(0.04) benign(0.026) TCGA-W3-A825-06 19 55174998 55174998 C T LILRB4 Silent p.L15L 0.51 TCGA-W3-A825-06 19 55175694 55175694 A G LILRB4 Missense_Mutation p.K138R 0.23 deleterious(0) benign(0.026) TCGA-W3-A825-06 19 55175695 55175695 G A LILRB4 Silent p.K138K 0.24 TCGA-W3-A825-06 19 55331354 55331354 C T KIR3DL1 Missense_Mutation p.S181F 0.40 tolerated(0.24) possibly_damaging(0.467) TCGA-W3-A825-06 19 55501907 55501907 G A NLRP2 Missense_Mutation p.D859N 0.48 tolerated(0.07) possibly_damaging(0.859) TCGA-W3-A825-06 19 55994453 55994453 C T ZNF628 Silent p.F631F 0.33 TCGA-W3-A825-06 19 56463966 56463966 G A NLRP8 Missense_Mutation p.E144K 0.49 tolerated(0.21) benign(0.021) TCGA-W3-A825-06 19 56549398 56549398 T C NLRP5 Missense_Mutation p.C875R 0.39 tolerated(0.47) benign(0) TCGA-W3-A825-06 19 56901833 56901833 G A ZNF582 Missense_Mutation p.S16F 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A825-06 19 5707125 5707125 G A LONP1 Silent p.S364S 0.41 TCGA-W3-A825-06 19 57175863 57175863 G A ZNF835 Missense_Mutation p.S235L 0.43 deleterious(0.02) possibly_damaging(0.656) TCGA-W3-A825-06 19 58198020 58198020 C G ZNF551 Missense_Mutation p.S126C 0.43 tolerated(0.17) benign(0.001) TCGA-W3-A825-06 19 58370119 58370119 T C CTD-2583A14.10 Silent p.T113T 0.21 TCGA-W3-A825-06 19 58549420 58549420 C T ZSCAN1 Silent p.R72R 0.42 TCGA-W3-A825-06 19 58579659 58579659 G A ZNF135 Missense_Mutation p.E627K 0.46 deleterious(0.02) possibly_damaging(0.799) TCGA-W3-A825-06 19 58601359 58601359 C T ZSCAN18 Silent p.L148L 0.42 TCGA-W3-A825-06 19 58698402 58698402 C T ZNF274 Silent p.T83T 0.25 TCGA-W3-A825-06 19 6828173 6828173 C T VAV1 Silent p.L338L 0.33 TCGA-W3-A825-06 19 6896527 6896527 C T EMR1 Silent p.F71F 0.44 TCGA-W3-A825-06 19 7506638 7506638 C T ARHGEF18 Silent p.S214S 0.35 TCGA-W3-A825-06 19 7675427 7675427 T C CAMSAP3 Missense_Mutation p.F303L 0.38 deleterious(0) probably_damaging(0.995) TCGA-W3-A825-06 19 7810699 7810699 G A CD209 Silent p.T151T 0.40 TCGA-W3-A825-06 19 7810962 7810962 G A CD209 Missense_Mutation p.P64S 0.40 deleterious(0.01) possibly_damaging(0.837) TCGA-W3-A825-06 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.53 deleterious(0.01) probably_damaging(0.978) TCGA-W3-A825-06 19 8467450 8467450 G A RAB11B Splice_Site p.X171_splice 0.41 TCGA-W3-A825-06 19 8467532 8467532 C T RAB11B Intron 0.38 TCGA-W3-A825-06 19 8586348 8586348 G A MYO1F 3'UTR 0.55 TCGA-W3-A825-06 19 872058 872058 G A MED16 Missense_Mutation p.R656W 0.34 deleterious(0) possibly_damaging(0.815) TCGA-W3-A825-06 19 9016671 9016671 G A MUC16 Missense_Mutation p.P12689L 0.39 benign(0.082) TCGA-W3-A825-06 19 902123 902123 G A R3HDM4 Missense_Mutation p.P27S 0.42 tolerated_low_confidence(0.14) benign(0.001) TCGA-W3-A825-06 19 9046981 9046981 G A MUC16 Silent p.V11550V 0.31 TCGA-W3-A825-06 19 9058359 9058359 C T MUC16 Missense_Mutation p.G9696E 0.26 unknown(0) TCGA-W3-A825-06 19 9063447 9063447 G A MUC16 Missense_Mutation p.P8000L 0.36 unknown(0) TCGA-W3-A825-06 19 9071105 9071105 C T MUC16 Silent p.S5447S 0.40 TCGA-W3-A825-06 19 9075839 9075839 C T MUC16 Nonsense_Mutation p.W3869* 0.48 TCGA-W3-A825-06 19 9077726 9077726 G A MUC16 Silent p.T3240T 0.38 TCGA-W3-A825-06 19 9082490 9082490 C T MUC16 Missense_Mutation p.E3109K 0.41 unknown(0) TCGA-W3-A825-06 19 9083611 9083611 G A MUC16 Missense_Mutation p.P2735L 0.45 unknown(0) TCGA-W3-A825-06 19 9084753 9084753 G A MUC16 Silent p.I2354I 0.30 TCGA-W3-A825-06 19 9086413 9086413 C T MUC16 Missense_Mutation p.G1801E 0.40 unknown(0) TCGA-W3-A825-06 19 9089140 9089140 G A MUC16 Missense_Mutation p.S892F 0.60 unknown(0) TCGA-W3-A825-06 19 9213734 9213734 G A OR7G2 Silent p.F83F 0.46 TCGA-W3-A825-06 19 9492138 9492138 C T ZNF177 Silent p.F377F 0.39 TCGA-W3-A825-06 19 9577332 9577332 C T ZNF560 Missense_Mutation p.G764E 0.47 deleterious(0.01) probably_damaging(0.993) TCGA-W3-A825-06 19 9577509 9577509 G A ZNF560 Missense_Mutation p.T705I 0.38 tolerated(0.74) possibly_damaging(0.86) TCGA-W3-A825-06 19 9582024 9582024 G A ZNF560 Missense_Mutation p.S90L 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.587) TCGA-W3-A825-06 1 10720560 10720560 G A CASZ1 Missense_Mutation p.S180F 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-W3-A825-06 1 110466460 110466460 C T CSF1 Missense_Mutation p.S406L 0.43 tolerated(0.42) benign(0.007) TCGA-W3-A825-06 1 112524706 112524706 C T KCND3 Missense_Mutation p.E215K 0.53 tolerated(0.2) benign(0.001) TCGA-W3-A825-06 1 114340188 114340188 A - RSBN1 Frame_Shift_Del p.S392Lfs*7 0.40 TCGA-W3-A825-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.71 tolerated(0.06) benign(0.006) TCGA-W3-A825-06 1 117699388 117699388 C T VTCN1 Missense_Mutation p.E85K 0.33 tolerated(0.45) benign(0.001) TCGA-W3-A825-06 1 118420609 118420609 G A GDAP2 Intron 0.34 TCGA-W3-A825-06 1 118462988 118462988 G A GDAP2 5'UTR 0.18 TCGA-W3-A825-06 1 11854860 11854860 G A MTHFR Silent p.P364P 0.28 TCGA-W3-A825-06 1 12820924 12820924 G A C1orf158 3'UTR 0.39 TCGA-W3-A825-06 1 12853434 12853434 G A PRAMEF1 Missense_Mutation p.D20N 0.36 tolerated(0.39) probably_damaging(0.957) TCGA-W3-A825-06 1 12908205 12908205 G A HNRNPCL1 5'UTR 0.08 TCGA-W3-A825-06 1 12952872 12952872 G A PRAMEF10 Missense_Mutation p.R434W 0.30 deleterious(0.04) benign(0.013) TCGA-W3-A825-06 1 12954580 12954580 G A PRAMEF10 Missense_Mutation p.R235C 0.30 deleterious(0.02) benign(0.031) TCGA-W3-A825-06 1 144852491 144852491 G A PDE4DIP Intron 0.18 TCGA-W3-A825-06 1 144857021 144857021 G A PDE4DIP Missense_Mutation p.P2155L 0.25 tolerated(0.13) benign(0.287) TCGA-W3-A825-06 1 145562129 145562129 G A ANKRD35 Missense_Mutation p.G606E 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-W3-A825-06 1 147381235 147381235 G A GJA8 Missense_Mutation p.E385K 0.36 tolerated(0.11) benign(0.115) TCGA-W3-A825-06 1 149880793 149880793 G A SV2A Missense_Mutation p.R444W 0.41 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 1 151611349 151611349 C T SNX27 Intron 0.54 TCGA-W3-A825-06 1 151773443 151773443 C T LINGO4 Missense_Mutation p.D580N 0.36 tolerated(0.52) benign(0.143) TCGA-W3-A825-06 1 152278480 152278480 C T FLG Missense_Mutation p.G2961E 0.14 benign(0.007) TCGA-W3-A825-06 1 152282192 152282192 C T FLG Missense_Mutation p.G1724R 0.40 probably_damaging(0.988) TCGA-W3-A825-06 1 152770479 152770479 G T LCE1D Missense_Mutation p.G70V 0.76 unknown(0) TCGA-W3-A825-06 1 153043131 153043131 G A SPRR2B Missense_Mutation p.P62L 0.37 tolerated_low_confidence(0.91) unknown(0) TCGA-W3-A825-06 1 153346256 153346256 G A S100A12 3'UTR 0.41 TCGA-W3-A825-06 1 153614901 153614901 C T CHTOP Silent p.L133L 0.38 TCGA-W3-A825-06 1 154247691 154247691 C T HAX1 Silent p.S206S 0.41 TCGA-W3-A825-06 1 155279924 155279924 G A FDPS Silent p.Q89Q 0.46 TCGA-W3-A825-06 1 157508955 157508955 C T FCRL5 Silent p.E441E 0.61 TCGA-W3-A825-06 1 157772297 157772297 C G FCRL1 Missense_Mutation p.K159N 0.49 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 1 15808888 15808888 G A CELA2B Missense_Mutation p.G119E 0.26 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 1 158582715 158582715 G A SPTA1 Silent p.F2342F 0.26 TCGA-W3-A825-06 1 159163324 159163324 G A CADM3 Nonsense_Mutation p.W199* 0.37 TCGA-W3-A825-06 1 159169584 159169584 C T CADM3 Silent p.I366I 0.29 TCGA-W3-A825-06 1 159283723 159283723 C T OR10J3 Missense_Mutation p.A243T 0.19 tolerated(0.09) benign(0.376) TCGA-W3-A825-06 1 159410066 159410066 C T OR10J1 Missense_Mutation p.S173F 0.43 tolerated(0.71) probably_damaging(0.918) TCGA-W3-A825-06 1 159505795 159505795 C T OR10J5 Translation_Start_Site p.M1? 0.35 deleterious(0.01) benign(0.012) TCGA-W3-A825-06 1 159683618 159683618 G A CRP Silent p.I124I 0.34 TCGA-W3-A825-06 1 160846443 160846443 C T ITLN1 3'UTR 0.31 TCGA-W3-A825-06 1 16091723 16091723 A G FBLIM1 Missense_Mutation p.N82S 0.31 tolerated(0.11) benign(0.247) TCGA-W3-A825-06 1 16101247 16101247 C T FBLIM1 Silent p.A282A 0.24 TCGA-W3-A825-06 1 161165372 161165372 C T ADAMTS4 Missense_Mutation p.G382R 0.35 tolerated(0.08) benign(0.004) TCGA-W3-A825-06 1 162325112 162325112 G A NOS1AP Missense_Mutation p.G244E 0.30 tolerated(0.27) benign(0.027) TCGA-W3-A825-06 1 165173169 165173169 C T LMX1A Missense_Mutation p.G366E 0.40 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 1 165218736 165218736 A G LMX1A Silent p.F135F 0.38 TCGA-W3-A825-06 1 167097768 167097768 G A DUSP27 Missense_Mutation p.D1134N 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 1 16895613 16895613 G A NBPF1 Missense_Mutation p.H857Y 0.08 tolerated(1) benign(0.084) TCGA-W3-A825-06 1 16914257 16914257 C T NBPF1 Missense_Mutation p.E177K 0.04 tolerated(0.07) possibly_damaging(0.486) TCGA-W3-A825-06 1 171154852 171154852 G A FMO2 5'UTR 0.33 TCGA-W3-A825-06 1 171174688 171174688 C T FMO2 Silent p.L366L 0.45 TCGA-W3-A825-06 1 172001546 172001546 G A DNM3 Silent p.L198L 0.42 TCGA-W3-A825-06 1 173569289 173569289 G A SLC9C2 Silent p.F65F 0.41 TCGA-W3-A825-06 1 173878768 173878768 C T SERPINC1 Missense_Mutation p.D359N 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-W3-A825-06 1 175324683 175324683 C T TNR Missense_Mutation p.E1069K 0.33 tolerated(0.08) probably_damaging(0.932) TCGA-W3-A825-06 1 175375673 175375673 C T TNR Missense_Mutation p.E60K 0.46 deleterious(0.04) benign(0.089) TCGA-W3-A825-06 1 17550887 17550887 C T PADI1 Silent p.G124G 0.35 TCGA-W3-A825-06 1 176564562 176564562 G A PAPPA2 Missense_Mutation p.D608N 0.44 deleterious(0) probably_damaging(0.993) TCGA-W3-A825-06 1 177249565 177249565 G A BRINP2 Nonsense_Mutation p.W418* 0.46 TCGA-W3-A825-06 1 179054772 179054772 G T TOR3A Missense_Mutation p.W128L 0.35 tolerated(0.45) benign(0.004) TCGA-W3-A825-06 1 181762883 181762883 G A CACNA1E Missense_Mutation p.G1994E 0.32 deleterious(0.02) possibly_damaging(0.629) TCGA-W3-A825-06 1 182369553 182369553 A T TEDDM1 Missense_Mutation p.L23Q 0.40 deleterious(0) probably_damaging(0.955) TCGA-W3-A825-06 1 183104191 183104191 C T LAMC1 Silent p.L1338L 0.32 TCGA-W3-A825-06 1 183196025 183196025 G A LAMC2 Missense_Mutation p.G420E 0.42 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 1 186024573 186024573 T G HMCN1 Missense_Mutation p.V2304G 0.39 probably_damaging(0.997) TCGA-W3-A825-06 1 186418589 186418589 C T PDC Translation_Start_Site p.M1? 0.46 deleterious_low_confidence(0) possibly_damaging(0.793) TCGA-W3-A825-06 1 18702878 18702878 C T IGSF21 Missense_Mutation p.H364Y 0.29 deleterious(0.03) possibly_damaging(0.457) TCGA-W3-A825-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.35 TCGA-W3-A825-06 1 19062270 19062270 G A PAX7 Missense_Mutation p.D434N 0.19 deleterious_low_confidence(0) benign(0.407) TCGA-W3-A825-06 1 192321268 192321268 G A RGS21 Silent p.T60T 0.47 TCGA-W3-A825-06 1 196197306 196197306 G A KCNT2 3'UTR 0.33 TCGA-W3-A825-06 1 196695643 196695643 G A CFH Silent p.G639G 0.45 TCGA-W3-A825-06 1 196801177 196801177 C T CFHR1 3'UTR 0.40 TCGA-W3-A825-06 1 196977706 196977706 G A CFHR5 Missense_Mutation p.D535N 0.24 deleterious(0.01) possibly_damaging(0.563) TCGA-W3-A825-06 1 197390987 197390987 G A CRB1 Missense_Mutation p.E677K 0.42 tolerated(0.17) benign(0.248) TCGA-W3-A825-06 1 197446981 197446981 C T CRB1 Missense_Mutation p.P1398L 0.33 tolerated(0.09) benign(0.118) TCGA-W3-A825-06 1 200965495 200965495 C T KIF21B Silent p.K702K 0.34 TCGA-W3-A825-06 1 200974808 200974808 C T KIF21B Silent p.E154E 0.35 TCGA-W3-A825-06 1 201185817 201185817 G A IGFN1 Silent p.R3177R 0.45 TCGA-W3-A825-06 1 203830744 203830744 C T SNRPE 5'UTR 0.47 TCGA-W3-A825-06 1 204198136 204198136 G A PLEKHA6 Missense_Mutation p.R894W 0.44 deleterious(0.03) benign(0.044) TCGA-W3-A825-06 1 204198137 204198137 G A PLEKHA6 Silent p.P893P 0.43 TCGA-W3-A825-06 1 206619609 206619609 C T SRGAP2 Missense_Mutation p.P602L 0.31 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 1 206658556 206658556 C T IKBKE Missense_Mutation p.S510F 0.45 deleterious(0.01) possibly_damaging(0.895) TCGA-W3-A825-06 1 206782792 206782792 G A EIF2D Missense_Mutation p.P90S 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A825-06 1 207225657 207225657 G A YOD1 5'Flank 0.49 TCGA-W3-A825-06 1 207793299 207793299 G A CR1 Missense_Mutation p.G2381R 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 1 209605553 209605553 C T MIR205HG RNA 0.41 TCGA-W3-A825-06 1 210637880 210637880 C T HHAT Silent p.F297F 0.38 TCGA-W3-A825-06 1 212617761 212617761 C T NENF Missense_Mutation p.P107S 0.37 deleterious(0.04) benign(0.086) TCGA-W3-A825-06 1 213178620 213178620 G A ANGEL2 Missense_Mutation p.P297S 0.38 tolerated(0.69) benign(0.043) TCGA-W3-A825-06 1 214171234 214171234 C T PROX1 Silent p.A452A 0.34 TCGA-W3-A825-06 1 214802489 214802489 A G CENPF Missense_Mutation p.K390R 0.42 benign(0.043) TCGA-W3-A825-06 1 223408405 223408405 G A SUSD4 Intron 0.41 TCGA-W3-A825-06 1 2283423 2283423 C T MORN1 Intron 0.59 TCGA-W3-A825-06 1 229478065 229478065 C T CCSAP Missense_Mutation p.D50N 0.50 deleterious(0.02) unknown(0) TCGA-W3-A825-06 1 240071315 240071315 G A CHRM3 Missense_Mutation p.M188I 0.40 deleterious(0) probably_damaging(0.946) TCGA-W3-A825-06 1 240071583 240071583 G A CHRM3 Missense_Mutation p.E278K 0.33 tolerated(0.77) benign(0.007) TCGA-W3-A825-06 1 240072063 240072063 G A CHRM3 Missense_Mutation p.A438T 0.36 tolerated(0.61) benign(0.001) TCGA-W3-A825-06 1 24112256 24112256 G A PITHD1 Missense_Mutation p.E138K 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-W3-A825-06 1 24201640 24201640 G A CNR2 Silent p.I156I 0.54 TCGA-W3-A825-06 1 247712418 247712418 C T GCSAML 5'UTR 0.40 TCGA-W3-A825-06 1 248004394 248004394 C T OR11L1 Missense_Mutation p.E269K 0.44 tolerated(0.37) probably_damaging(0.961) TCGA-W3-A825-06 1 248031333 248031333 C T TRIM58 Missense_Mutation p.P280L 0.40 tolerated(0.06) benign(0.009) TCGA-W3-A825-06 1 248366863 248366863 C T OR2M3 Missense_Mutation p.S165F 0.36 deleterious(0.02) benign(0.185) TCGA-W3-A825-06 1 248367069 248367069 C T OR2M3 Missense_Mutation p.R234C 0.41 tolerated(0.06) benign(0.013) TCGA-W3-A825-06 1 248436488 248436488 G A OR2T33 Missense_Mutation p.S210F 0.13 deleterious(0.03) benign(0.232) TCGA-W3-A825-06 1 248685491 248685491 C T OR2G6 Missense_Mutation p.P182S 0.37 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 1 26303239 26303239 G A PAFAH2 Missense_Mutation p.A231V 0.23 deleterious(0.05) probably_damaging(0.996) TCGA-W3-A825-06 1 27622884 27622884 C T WDTC1 Missense_Mutation p.S314F 0.41 deleterious(0.01) benign(0.116) TCGA-W3-A825-06 1 28167629 28167629 C T PPP1R8 Silent p.L126L 0.18 TCGA-W3-A825-06 1 32192980 32192980 G A BAI2 3'UTR 0.36 TCGA-W3-A825-06 1 32713018 32713018 C T FAM167B 5'UTR 0.11 TCGA-W3-A825-06 1 3328621 3328621 G A PRDM16 Silent p.G620G 0.27 TCGA-W3-A825-06 1 33790353 33790353 G A PHC2 3'UTR 0.31 TCGA-W3-A825-06 1 34037242 34037242 G A CSMD2 Missense_Mutation p.A2618V 0.19 tolerated(0.05) probably_damaging(0.943) TCGA-W3-A825-06 1 34043009 34043009 G A CSMD2 Missense_Mutation p.S2490F 0.43 deleterious(0.05) benign(0.126) TCGA-W3-A825-06 1 34166236 34166236 C T CSMD2 Missense_Mutation p.G1165E 0.60 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 1 34190148 34190148 G A CSMD2 Silent p.F911F 0.17 TCGA-W3-A825-06 1 34191043 34191043 G A CSMD2 Missense_Mutation p.P828S 0.53 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 1 35480749 35480749 G A ZMYM6 Missense_Mutation p.P148L 0.42 tolerated(0.34) probably_damaging(0.941) TCGA-W3-A825-06 1 35480750 35480750 G A ZMYM6 Missense_Mutation p.P148S 0.44 tolerated(0.33) probably_damaging(0.914) TCGA-W3-A825-06 1 35563096 35563096 A T ZMYM1 Silent p.P116P 0.31 TCGA-W3-A825-06 1 36202017 36202017 G A CLSPN 3'UTR 0.44 TCGA-W3-A825-06 1 38227502 38227502 G A EPHA10 Missense_Mutation p.P142L 0.33 tolerated(0.2) benign(0.002) TCGA-W3-A825-06 1 39854269 39854269 C T MACF1 Missense_Mutation p.A3190V 0.21 benign(0.395) TCGA-W3-A825-06 1 40704417 40704417 A G RLF Missense_Mutation p.K1348R 0.55 tolerated(0.31) benign(0.124) TCGA-W3-A825-06 1 40704420 40704420 C A RLF Missense_Mutation p.A1349E 0.53 tolerated(0.46) possibly_damaging(0.816) TCGA-W3-A825-06 1 42045872 42045872 C T HIVEP3 Missense_Mutation p.E1533K 0.28 benign(0.242) TCGA-W3-A825-06 1 44163628 44163628 G T KDM4A Nonsense_Mutation p.E929* 0.24 TCGA-W3-A825-06 1 44437616 44437616 C T DPH2 Missense_Mutation p.P348S 0.52 tolerated(0.08) benign(0.009) TCGA-W3-A825-06 1 47534380 47534380 G A CYP4Z1 Silent p.T88T 0.42 TCGA-W3-A825-06 1 55078382 55078382 A G FAM151A Missense_Mutation p.F193L 0.39 deleterious(0) probably_damaging(0.997) TCGA-W3-A825-06 1 55603301 55603301 G A USP24 Missense_Mutation p.L1030F 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-W3-A825-06 1 57340750 57340750 C T C8A Silent p.F100F 0.31 TCGA-W3-A825-06 1 57415405 57415405 G A C8B Silent p.F229F 0.17 TCGA-W3-A825-06 1 57481057 57481057 G A DAB1 Missense_Mutation p.P315S 0.46 tolerated(0.28) benign(0.031) TCGA-W3-A825-06 1 57489283 57489283 G A DAB1 Silent p.I272I 0.36 TCGA-W3-A825-06 1 60373569 60373569 C T CYP2J2 Missense_Mutation p.E298K 0.19 deleterious(0.04) benign(0.443) TCGA-W3-A825-06 1 62190799 62190799 G A TM2D1 Silent p.V60V 0.41 TCGA-W3-A825-06 1 62672751 62672751 G A L1TD1 Missense_Mutation p.E151K 0.65 tolerated(0.06) unknown(0) TCGA-W3-A825-06 1 62740120 62740120 C T KANK4 Missense_Mutation p.R219Q 0.12 tolerated(0.96) benign(0) TCGA-W3-A825-06 1 63024733 63024733 G A DOCK7 Silent p.V786V 0.47 TCGA-W3-A825-06 1 6311519 6311519 G A GPR153 Silent p.S286S 0.29 TCGA-W3-A825-06 1 63997514 63997514 C T EFCAB7 Missense_Mutation p.P71S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 1 64097431 64097431 C T PGM1 Silent p.I238I 0.50 TCGA-W3-A825-06 1 71318462 71318462 C T PTGER3 3'UTR 0.17 TCGA-W3-A825-06 1 74492517 74492517 G A LRRIQ3 Missense_Mutation p.P619S 0.33 deleterious(0.05) possibly_damaging(0.541) TCGA-W3-A825-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.31 tolerated(0.27) benign(0.035) TCGA-W3-A825-06 1 75055760 75055760 C T C1orf173 Missense_Mutation p.M577I 0.56 tolerated(1) benign(0) TCGA-W3-A825-06 1 77516011 77516011 G A ST6GALNAC5 Missense_Mutation p.R247K 0.33 probably_damaging(0.978) TCGA-W3-A825-06 1 89847415 89847415 C T GBP6 Missense_Mutation p.P345L 0.74 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 1 93073194 93073194 C T EVI5 Missense_Mutation p.G624R 0.81 tolerated(0.13) benign(0.157) TCGA-W3-A825-06 1 94485159 94485159 C T ABCA4 Silent p.V1725V 0.58 TCGA-W3-A825-06 1 94526288 94526288 G A ABCA4 Silent p.F655F 0.93 TCGA-W3-A825-06 1 94643191 94643191 C T ARHGAP29 Missense_Mutation p.G961E 0.73 tolerated(1) benign(0.001) TCGA-W3-A825-06 20 10032339 10032339 C T ANKEF1 Silent p.L558L 0.47 TCGA-W3-A825-06 20 13098364 13098364 G A SPTLC3 Missense_Mutation p.G382R 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 20 13140699 13140699 G A SPTLC3 Missense_Mutation p.G489R 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 20 13867023 13867023 C T SEL1L2 Missense_Mutation p.E271K 0.28 deleterious(0) probably_damaging(0.993) TCGA-W3-A825-06 20 20493273 20493273 G A RALGAPA2 Silent p.F1580F 0.30 TCGA-W3-A825-06 20 21314598 21314598 T C XRN2 Missense_Mutation p.V364A 0.29 deleterious(0) probably_damaging(0.936) TCGA-W3-A825-06 20 23065386 23065386 C T CD93 Missense_Mutation p.D482N 0.35 tolerated(0.47) benign(0.002) TCGA-W3-A825-06 20 2443392 2443392 G A SNRPB Missense_Mutation p.P192L 0.51 deleterious(0.01) unknown(0) TCGA-W3-A825-06 20 2596848 2596848 C T TMC2 Silent p.I646I 0.43 TCGA-W3-A825-06 20 29623188 29623188 G A FRG1B 5'UTR 0.02 TCGA-W3-A825-06 20 29966177 29966177 C T DEFB118 3'Flank 0.23 TCGA-W3-A825-06 20 29966178 29966178 C T DEFB118 3'Flank 0.23 TCGA-W3-A825-06 20 30432938 30432938 C T FOXS1 Silent p.A136A 0.45 TCGA-W3-A825-06 20 33148702 33148702 C T PIGU Missense_Mutation p.D426N 0.56 tolerated(0.45) possibly_damaging(0.907) TCGA-W3-A825-06 20 34599095 34599095 C T CNBD2 Silent p.I395I 0.31 TCGA-W3-A825-06 20 36407653 36407653 C T CTNNBL1 Missense_Mutation p.S316F 0.23 deleterious(0) possibly_damaging(0.467) TCGA-W3-A825-06 20 41419841 41419841 G A PTPRT Silent p.F160F 0.27 TCGA-W3-A825-06 20 42157968 42157968 C T L3MBTL1 Missense_Mutation p.P317L 0.13 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 20 43257749 43257749 C G ADA Missense_Mutation p.D53H 0.31 tolerated(0.08) benign(0.032) TCGA-W3-A825-06 20 43851450 43851450 C T SEMG2 Missense_Mutation p.P393S 0.48 tolerated(0.09) probably_damaging(0.996) TCGA-W3-A825-06 20 44238732 44238732 G A WFDC9 Missense_Mutation p.P30L 0.24 tolerated(0.31) benign(0.002) TCGA-W3-A825-06 20 44279267 44279267 G A WFDC11 5'UTR 0.25 TCGA-W3-A825-06 20 45130485 45130485 G A ZNF334 Missense_Mutation p.S498F 0.49 tolerated(1) benign(0.001) TCGA-W3-A825-06 20 47710795 47710795 A G CSE1L Missense_Mutation p.M856V 0.24 tolerated(0.37) benign(0.027) TCGA-W3-A825-06 20 50290808 50290808 G A ATP9A Silent p.L307L 0.29 TCGA-W3-A825-06 20 50401222 50401222 A G SALL4 Missense_Mutation p.V915A 0.28 tolerated(0.07) probably_damaging(0.997) TCGA-W3-A825-06 20 5294854 5294854 G A PROKR2 Silent p.I54I 0.25 TCGA-W3-A825-06 20 53171574 53171574 C T DOK5 Missense_Mutation p.H57Y 0.52 tolerated(0.68) possibly_damaging(0.733) TCGA-W3-A825-06 20 55108490 55108490 A G FAM209B Silent p.E31E 0.47 TCGA-W3-A825-06 20 57415659 57415659 C T RP4-806M20.3 5'Flank 0.31 TCGA-W3-A825-06 20 57562812 57562812 T A NELFCD Missense_Mutation p.S130R 0.32 tolerated(0.19) benign(0.115) TCGA-W3-A825-06 20 57768573 57768573 G A ZNF831 Nonsense_Mutation p.W833* 0.33 TCGA-W3-A825-06 20 57781969 57781969 G A ZNF831 Silent p.G1295G 0.50 TCGA-W3-A825-06 20 59829929 59829929 C G CDH4 Missense_Mutation p.F35L 0.56 tolerated(0.06) benign(0.12) TCGA-W3-A825-06 20 60697702 60697702 C T LSM14B 5'UTR 0.67 TCGA-W3-A825-06 20 61492853 61492853 A T TCFL5 Missense_Mutation p.L57Q 0.27 deleterious(0) probably_damaging(0.979) TCGA-W3-A825-06 20 61595647 61595647 C T SLC17A9 Missense_Mutation p.S297F 0.58 deleterious(0) probably_damaging(0.961) TCGA-W3-A825-06 20 62571293 62571293 A G UCKL1 3'UTR 0.32 TCGA-W3-A825-06 20 76798 76798 C T DEFB125 Missense_Mutation p.P71S 0.68 deleterious(0.04) benign(0.02) TCGA-W3-A825-06 21 10906946 10906946 C T TPTE Missense_Mutation p.E539K 0.12 deleterious(0.01) probably_damaging(0.913) TCGA-W3-A825-06 21 11021192 11021192 G A BAGE2 RNA 0.07 TCGA-W3-A825-06 21 11038949 11038949 G A BAGE2 RNA 0.03 TCGA-W3-A825-06 21 11049520 11049520 C T BAGE2 RNA 0.11 TCGA-W3-A825-06 21 11058201 11058201 G A BAGE2 RNA 0.05 TCGA-W3-A825-06 21 30699525 30699525 C T BACH1 Silent p.N460N 0.46 TCGA-W3-A825-06 21 31768553 31768553 C T KRTAP13-1 Missense_Mutation p.S50F 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-W3-A825-06 21 31913887 31913887 G A KRTAP19-6 3'UTR 0.29 TCGA-W3-A825-06 21 32595730 32595730 G A TIAM1 Missense_Mutation p.H663Y 0.42 deleterious(0) possibly_damaging(0.902) TCGA-W3-A825-06 21 37732496 37732496 C T MORC3 Missense_Mutation p.P449L 0.34 deleterious(0.01) possibly_damaging(0.904) TCGA-W3-A825-06 21 38309252 38309252 G A HLCS Missense_Mutation p.L165F 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 21 38390243 38390243 C T RIPPLY3 Silent p.F103F 0.38 TCGA-W3-A825-06 21 41416005 41416005 C T DSCAM Missense_Mutation p.D1795N 0.40 deleterious(0.03) probably_damaging(1) TCGA-W3-A825-06 21 41459141 41459141 C T DSCAM Silent p.K1308K 0.37 TCGA-W3-A825-06 21 43732339 43732339 C T TFF3 3'UTR 0.39 TCGA-W3-A825-06 21 44524520 44524520 G A U2AF1 Intron 0.27 TCGA-W3-A825-06 21 45855044 45855044 G A TRPM2 Silent p.G1335G 0.44 TCGA-W3-A825-06 21 45947241 45947241 G A TSPEAR Silent p.F361F 0.36 TCGA-W3-A825-06 21 45999634 45999634 G A KRTAP10-5 3'UTR 0.39 TCGA-W3-A825-06 21 46950801 46950801 G A SLC19A1 Missense_Mutation p.T345M 0.09 tolerated(0.1) benign(0.333) TCGA-W3-A825-06 21 47531924 47531924 C T COL6A2 Silent p.F49F 0.39 TCGA-W3-A825-06 21 47545794 47545794 G A COL6A2 Missense_Mutation p.E689K 0.36 tolerated(0.1) probably_damaging(0.998) TCGA-W3-A825-06 21 47953445 47953445 C T DIP2A Silent p.G438G 0.26 TCGA-W3-A825-06 21 47978147 47978149 GAA - DIP2A In_Frame_Del p.N1271del 0.58 TCGA-W3-A825-06 22 17590320 17590320 T C IL17RA Silent p.P737P 0.59 TCGA-W3-A825-06 22 18022507 18022507 C T CECR2 Missense_Mutation p.S871F 0.67 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 22 18222193 18222193 G A BID Silent p.D141D 0.86 TCGA-W3-A825-06 22 18844872 18844872 C T BCRP7 RNA 0.12 TCGA-W3-A825-06 22 19126748 19126748 G A DGCR14 Missense_Mutation p.T249M 0.70 deleterious(0) probably_damaging(0.911) TCGA-W3-A825-06 22 19188919 19188919 G A CLTCL1 Missense_Mutation p.S1229F 0.64 tolerated(0.07) probably_damaging(1) TCGA-W3-A825-06 22 21331359 21331359 G A AIFM3 Silent p.R419R 0.59 TCGA-W3-A825-06 22 23237681 23237681 A G IGLL5 Missense_Mutation p.K151R 0.70 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-W3-A825-06 22 38201945 38201945 A G H1F0 Missense_Mutation p.K132E 0.69 tolerated(0.19) unknown(0) TCGA-W3-A825-06 22 39077956 39077956 C T TOMM22 5'UTR 0.74 TCGA-W3-A825-06 22 43986003 43986003 C T EFCAB6 Missense_Mutation p.E995K 0.67 tolerated(0.07) benign(0.18) TCGA-W3-A825-06 22 46654074 46654074 T C PKDREJ Missense_Mutation p.T1716A 0.74 deleterious(0.05) benign(0.077) TCGA-W3-A825-06 22 46668229 46668229 C T TTC38 Intron 0.72 TCGA-W3-A825-06 22 50724456 50724456 G A PLXNB2 Missense_Mutation p.S650L 0.78 tolerated(0.06) probably_damaging(0.997) TCGA-W3-A825-06 2 102992476 102992476 G A IL18R1 Missense_Mutation p.G193E 0.57 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 2 103095350 103095350 C T SLC9A4 Silent p.L103L 0.42 TCGA-W3-A825-06 2 103120059 103120059 C T SLC9A4 Silent p.I291I 0.52 TCGA-W3-A825-06 2 105473168 105473168 C T POU3F3 Silent p.I400I 0.24 TCGA-W3-A825-06 2 106761689 106761689 G A UXS1 Silent p.F143F 0.32 TCGA-W3-A825-06 2 107459853 107459853 C T ST6GAL2 Missense_Mutation p.R194K 0.48 benign(0.011) TCGA-W3-A825-06 2 111551663 111551663 A G ACOXL Missense_Mutation p.Y86C 0.41 deleterious(0.02) possibly_damaging(0.599) TCGA-W3-A825-06 2 112767611 112767611 T C MERTK Silent p.L683L 0.45 TCGA-W3-A825-06 2 113789311 113789311 G A IL36B 5'UTR 0.55 TCGA-W3-A825-06 2 113875490 113875490 G A IL1RN 5'UTR 0.28 TCGA-W3-A825-06 2 119739816 119739816 C T MARCO Missense_Mutation p.S329F 0.29 tolerated(0.06) unknown(0) TCGA-W3-A825-06 2 120005431 120005431 C T STEAP3 Silent p.F233F 0.18 TCGA-W3-A825-06 2 120231120 120231120 C T SCTR Missense_Mutation p.R105Q 0.19 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 2 121107086 121107086 A G INHBB Missense_Mutation p.H287R 0.21 tolerated(0.18) probably_damaging(0.997) TCGA-W3-A825-06 2 121995283 121995283 G A TFCP2L1 Missense_Mutation p.P307S 0.20 tolerated(0.08) possibly_damaging(0.69) TCGA-W3-A825-06 2 121995284 121995284 G A TFCP2L1 Silent p.L306L 0.19 TCGA-W3-A825-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.57 TCGA-W3-A825-06 2 125367443 125367443 G A CNTNAP5 Missense_Mutation p.D607N 0.43 deleterious(0) possibly_damaging(0.901) TCGA-W3-A825-06 2 132021849 132021849 G A POTEE Missense_Mutation p.E941K 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-W3-A825-06 2 136575354 136575354 C T LCT Missense_Mutation p.G422S 0.49 tolerated(0.34) benign(0.014) TCGA-W3-A825-06 2 136575355 136575355 C T LCT Silent p.E421E 0.51 TCGA-W3-A825-06 2 136594650 136594650 G A LCT Silent p.S30S 0.57 TCGA-W3-A825-06 2 138414514 138414514 G A THSD7B Silent p.Q1421Q 0.20 TCGA-W3-A825-06 2 141294268 141294268 G A LRP1B Silent p.S2508S 0.19 TCGA-W3-A825-06 2 141665546 141665546 C T LRP1B Silent p.K1140K 0.15 TCGA-W3-A825-06 2 152319798 152319798 C T RIF1 Missense_Mutation p.T1255I 0.47 tolerated(0.09) benign(0.027) TCGA-W3-A825-06 2 152411469 152411469 G A NEB Silent p.L6468L 0.47 TCGA-W3-A825-06 2 153483136 153483136 G A FMNL2 Missense_Mutation p.G687E 0.32 probably_damaging(0.969) TCGA-W3-A825-06 2 162751192 162751192 T A SLC4A10 Missense_Mutation p.F400I 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-W3-A825-06 2 165578686 165578686 G A COBLL1 Missense_Mutation p.P299S 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 2 166616046 166616046 C T GALNT3 Silent p.L291L 0.19 TCGA-W3-A825-06 2 167144958 167144958 C T SCN9A Missense_Mutation p.E435K 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-W3-A825-06 2 167759983 167759983 G A XIRP2 5'UTR 0.74 TCGA-W3-A825-06 2 167759984 167759984 G A XIRP2 5'UTR 0.72 TCGA-W3-A825-06 2 168100393 168100393 G A XIRP2 Missense_Mutation p.E831K 0.25 probably_damaging(0.999) TCGA-W3-A825-06 2 171710458 171710458 G A GAD1 Missense_Mutation p.D447N 0.55 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 2 173339710 173339710 T C ITGA6 Missense_Mutation p.V347A 0.58 deleterious(0) benign(0.393) TCGA-W3-A825-06 2 174131217 174131217 C T MLTK Silent p.F714F 0.28 TCGA-W3-A825-06 2 177161597 177161597 C T MTX2 Missense_Mutation p.P17L 0.24 deleterious(0) probably_damaging(0.923) TCGA-W3-A825-06 2 179185046 179185046 G A OSBPL6 Intron 0.23 TCGA-W3-A825-06 2 179418423 179418423 A C TTN Missense_Mutation p.V29770G 0.20 TCGA-W3-A825-06 2 179439256 179439256 C T TTN Missense_Mutation p.R23868Q 0.55 TCGA-W3-A825-06 2 179453383 179453383 C T TTN Missense_Mutation p.M21023I 0.51 TCGA-W3-A825-06 2 179455599 179455599 C T TTN Missense_Mutation p.E20285K 0.15 TCGA-W3-A825-06 2 179462723 179462723 G A TTN Silent p.F19058F 0.31 TCGA-W3-A825-06 2 179466465 179466465 C T TTN Missense_Mutation p.R18451Q 0.25 TCGA-W3-A825-06 2 179474685 179474685 C T TTN Silent p.E17155E 0.19 TCGA-W3-A825-06 2 179490105 179490105 C T TTN Missense_Mutation p.G14815R 0.46 TCGA-W3-A825-06 2 179499093 179499093 C T TTN Missense_Mutation p.G14139S 0.56 TCGA-W3-A825-06 2 179500325 179500325 C T TTN Missense_Mutation p.G13909E 0.59 TCGA-W3-A825-06 2 179592097 179592097 T C TTN Silent p.E6665E 0.50 TCGA-W3-A825-06 2 179594469 179594469 C T TTN Missense_Mutation p.E6171K 0.23 TCGA-W3-A825-06 2 179604474 179604474 G A TTN Nonsense_Mutation p.Q4496* 0.27 TCGA-W3-A825-06 2 179615105 179615105 G A TTN Intron 0.26 TCGA-W3-A825-06 2 179615293 179615293 G A TTN Intron 0.19 TCGA-W3-A825-06 2 179621214 179621214 G A TTN Silent p.F3663F 0.20 TCGA-W3-A825-06 2 179633640 179633640 G A TTN Silent p.L2975L 0.24 TCGA-W3-A825-06 2 179637986 179637986 C T TTN Missense_Mutation p.D2569N 0.47 TCGA-W3-A825-06 2 179640277 179640277 G A TTN Missense_Mutation p.P2105L 0.53 TCGA-W3-A825-06 2 179641187 179641187 C T TTN Missense_Mutation p.E1802K 0.40 TCGA-W3-A825-06 2 179665278 179665278 C T TTN Missense_Mutation p.E143K 0.28 TCGA-W3-A825-06 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.30 TCGA-W3-A825-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.44 deleterious(0) probably_damaging(0.961) TCGA-W3-A825-06 2 187627020 187627020 C T FAM171B Nonsense_Mutation p.Q651* 0.47 TCGA-W3-A825-06 2 18767610 18767610 A G NT5C1B Silent p.L116L 0.23 TCGA-W3-A825-06 2 18767612 18767612 G A NT5C1B Missense_Mutation p.L116F 0.23 tolerated_low_confidence(0.12) benign(0.424) TCGA-W3-A825-06 2 190340077 190340077 A G WDR75 Silent p.S809S 0.25 TCGA-W3-A825-06 2 192814967 192814967 C T TMEFF2 3'UTR 0.30 TCGA-W3-A825-06 2 196788492 196788492 C T DNAH7 Missense_Mutation p.D1218N 0.42 tolerated(1) benign(0.013) TCGA-W3-A825-06 2 198646475 198646475 G A BOLL Missense_Mutation p.R46C 0.54 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 2 200193516 200193516 G A SATB2 Missense_Mutation p.R431C 0.53 deleterious(0.05) possibly_damaging(0.891) TCGA-W3-A825-06 2 207171017 207171017 C T ZDBF2 Missense_Mutation p.L589F 0.45 tolerated(0.2) possibly_damaging(0.879) TCGA-W3-A825-06 2 207615768 207615768 G A MDH1B Silent p.I314I 0.54 TCGA-W3-A825-06 2 208994271 208994271 G A CRYGC Missense_Mutation p.P49L 0.47 deleterious(0) probably_damaging(0.991) TCGA-W3-A825-06 2 210557750 210557750 C T MAP2 Missense_Mutation p.P286S 0.16 tolerated_low_confidence(0.33) benign(0.408) TCGA-W3-A825-06 2 211158517 211158517 C T MYL1 Silent p.K162K 0.46 TCGA-W3-A825-06 2 211471475 211471475 C T CPS1 Missense_Mutation p.P674S 0.52 deleterious(0) probably_damaging(0.928) TCGA-W3-A825-06 2 212248410 212248410 G A ERBB4 Missense_Mutation p.S1286F 0.44 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-W3-A825-06 2 212286830 212286830 C T ERBB4 Splice_Site p.X956_splice 0.50 TCGA-W3-A825-06 2 21228749 21228749 G A APOB Missense_Mutation p.S3664F 0.56 probably_damaging(0.928) TCGA-W3-A825-06 2 21229889 21229889 G A APOB Missense_Mutation p.S3284F 0.30 benign(0.206) TCGA-W3-A825-06 2 21230314 21230314 G A APOB Silent p.I3142I 0.53 TCGA-W3-A825-06 2 215876181 215876181 C T ABCA12 Missense_Mutation p.G772R 0.53 tolerated(0.06) benign(0.078) TCGA-W3-A825-06 2 215890473 215890473 C T ABCA12 Missense_Mutation p.R404Q 0.53 tolerated(0.73) benign(0.001) TCGA-W3-A825-06 2 217297547 217297547 C T SMARCAL1 Missense_Mutation p.L481F 0.26 deleterious(0.02) probably_damaging(1) TCGA-W3-A825-06 2 217300074 217300074 G T SMARCAL1 Missense_Mutation p.W500L 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 2 217300076 217300076 C T SMARCAL1 Silent p.L501L 0.44 TCGA-W3-A825-06 2 219875590 219875590 G A CCDC108 Silent p.I1362I 0.63 TCGA-W3-A825-06 2 220435178 220435178 C T OBSL1 Silent p.E259E 0.39 TCGA-W3-A825-06 2 227907829 227907829 C T COL4A4 Missense_Mutation p.G1121R 0.24 unknown(0) TCGA-W3-A825-06 2 228846413 228846413 C T SPHKAP 3'UTR 0.45 TCGA-W3-A825-06 2 228884574 228884574 C T SPHKAP Missense_Mutation p.M332I 0.22 tolerated(0.1) benign(0) TCGA-W3-A825-06 2 229890298 229890298 C T PID1 3'UTR 0.18 TCGA-W3-A825-06 2 233194692 233194692 G A DIS3L2 Missense_Mutation p.A637T 0.08 tolerated(0.06) possibly_damaging(0.507) TCGA-W3-A825-06 2 233321918 233321918 C T ALPI Silent p.T178T 0.40 TCGA-W3-A825-06 2 233749987 233749987 C T NGEF Intron 0.22 TCGA-W3-A825-06 2 234085967 234085967 G C INPP5D Silent p.L670L 0.18 TCGA-W3-A825-06 2 234527024 234527024 C T UGT1A8 Missense_Mutation p.S224F 0.24 tolerated(0.51) benign(0.001) TCGA-W3-A825-06 2 234652529 234652529 G A UGT1A10 Intron 0.21 TCGA-W3-A825-06 2 234652530 234652530 G A UGT1A10 Intron 0.20 TCGA-W3-A825-06 2 234846039 234846039 G A TRPM8 Missense_Mutation p.M78I 0.38 tolerated(0.45) benign(0) TCGA-W3-A825-06 2 238253482 238253482 G A COL6A3 Silent p.P2393P 0.26 TCGA-W3-A825-06 2 239040485 239040485 C T ESPNL 3'UTR 0.67 TCGA-W3-A825-06 2 240981367 240981367 G A PRR21 Missense_Mutation p.H345Y 0.48 tolerated_low_confidence(0.96) unknown(0) TCGA-W3-A825-06 2 24498704 24498704 G A ITSN2 Silent p.T653T 0.48 TCGA-W3-A825-06 2 27121531 27121531 G A DPYSL5 Missense_Mutation p.G55E 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A825-06 2 27169862 27169862 A G DPYSL5 Silent p.%3D 0.55 TCGA-W3-A825-06 2 27800178 27800178 G A C2orf16 Missense_Mutation p.D247N 0.18 tolerated(0.14) probably_damaging(0.981) TCGA-W3-A825-06 2 27886908 27886908 C T SLC4A1AP Missense_Mutation p.P97S 0.10 tolerated(0.23) benign(0.007) TCGA-W3-A825-06 2 29295449 29295449 C T C2orf71 Missense_Mutation p.G560E 0.47 tolerated(0.24) benign(0.063) TCGA-W3-A825-06 2 31483707 31483707 A C EHD3 Silent p.L278L 0.53 TCGA-W3-A825-06 2 31572671 31572671 T G XDH Missense_Mutation p.E950D 0.27 tolerated(0.15) benign(0.12) TCGA-W3-A825-06 2 33540336 33540336 G A LTBP1 Missense_Mutation p.D1244N 0.48 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 2 37105153 37105153 G A STRN Missense_Mutation p.P402S 0.23 tolerated(0.14) benign(0.086) TCGA-W3-A825-06 2 40342638 40342638 G A SLC8A1 Missense_Mutation p.H893Y 0.24 tolerated(0.07) probably_damaging(0.943) TCGA-W3-A825-06 2 40657010 40657010 C T SLC8A1 Silent p.L137L 0.50 TCGA-W3-A825-06 2 43927411 43927411 C T PLEKHH2 Silent p.P438P 0.49 TCGA-W3-A825-06 2 44566490 44566490 G A PREPL Silent p.F255F 0.47 TCGA-W3-A825-06 2 47378421 47378421 G A C2orf61 Silent p.P125P 0.57 TCGA-W3-A825-06 2 47378422 47378422 G A C2orf61 Missense_Mutation p.P125L 0.56 deleterious(0.03) possibly_damaging(0.708) TCGA-W3-A825-06 2 48589818 48589818 C T FOXN2 Silent p.I225I 0.16 TCGA-W3-A825-06 2 50692581 50692581 G A NRXN1 Silent p.D1161D 0.32 TCGA-W3-A825-06 2 51253512 51253512 C T NRXN1 Missense_Mutation p.E290K 0.62 tolerated(0.5) benign(0) TCGA-W3-A825-06 2 53955876 53955876 C T ASB3 Missense_Mutation p.E228K 0.52 tolerated(0.08) benign(0.068) TCGA-W3-A825-06 2 61148917 61148917 T G REL Missense_Mutation p.H369Q 0.49 tolerated(0.22) possibly_damaging(0.475) TCGA-W3-A825-06 2 61441790 61441790 G A USP34 Missense_Mutation p.S2696L 0.24 tolerated(0.21) benign(0.218) TCGA-W3-A825-06 2 64794725 64794725 T G AFTPH Missense_Mutation p.I655M 0.61 deleterious(0.02) possibly_damaging(0.461) TCGA-W3-A825-06 2 68384814 68384814 G A WDR92 5'Flank 0.65 TCGA-W3-A825-06 2 69093550 69093550 C A BMP10 Missense_Mutation p.R163L 0.68 tolerated(0.17) possibly_damaging(0.58) TCGA-W3-A825-06 2 70188518 70188518 G A ASPRV1 Silent p.F101F 0.61 TCGA-W3-A825-06 2 71901410 71901410 C T DYSF Silent p.S1956S 0.17 TCGA-W3-A825-06 2 74751390 74751390 C T DQX1 Missense_Mutation p.R159Q 0.57 deleterious(0.03) benign(0.176) TCGA-W3-A825-06 2 79363078 79363078 C T REG1P RNA 0.80 TCGA-W3-A825-06 2 85051119 85051119 C T TRABD2A Missense_Mutation p.R382Q 0.32 tolerated(0.11) benign(0.007) TCGA-W3-A825-06 2 85981508 85981508 C G ATOH8 Missense_Mutation p.R66G 0.52 deleterious_low_confidence(0.01) benign(0.171) TCGA-W3-A825-06 2 87141002 87141002 G A RGPD1 5'Flank 0.15 TCGA-W3-A825-06 2 89416905 89416905 G A IGKV1-17 Silent p.F93F 0.19 TCGA-W3-A825-06 2 95815073 95815073 G A ZNF514 Missense_Mutation p.S386F 0.48 tolerated(0.38) benign(0.248) TCGA-W3-A825-06 2 95847256 95847267 GCCCCTACGAGT - ZNF2 In_Frame_Del p.P229_C232del 0.18 TCGA-W3-A825-06 2 96689170 96689170 C T GPAT2 Missense_Mutation p.A639T 0.58 tolerated(0.19) possibly_damaging(0.682) TCGA-W3-A825-06 2 96920677 96920677 G A TMEM127 Silent p.F101F 0.15 TCGA-W3-A825-06 2 99012987 99012987 G A CNGA3 Missense_Mutation p.D452N 0.51 tolerated(0.12) possibly_damaging(0.555) TCGA-W3-A825-06 3 111658412 111658412 G A PHLDB2 Missense_Mutation p.E741K 0.20 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 3 111732455 111732455 G A TAGLN3 3'UTR 0.50 TCGA-W3-A825-06 3 111919586 111919586 C T SLC9C1 Silent p.R782R 0.45 TCGA-W3-A825-06 3 118865449 118865449 C G C3orf30 Missense_Mutation p.T138R 0.21 tolerated(0.3) possibly_damaging(0.622) TCGA-W3-A825-06 3 118865773 118865773 C T C3orf30 Missense_Mutation p.S246L 0.55 tolerated(0.86) probably_damaging(0.947) TCGA-W3-A825-06 3 121209084 121209084 C T POLQ Nonsense_Mutation p.W898* 0.24 TCGA-W3-A825-06 3 121305205 121305205 C T ARGFX Missense_Mutation p.L236F 0.53 tolerated(1) benign(0.002) TCGA-W3-A825-06 3 121366198 121366198 G A HCLS1 Missense_Mutation p.R86W 0.23 deleterious(0) possibly_damaging(0.898) TCGA-W3-A825-06 3 130360508 130360508 C T COL6A6 Missense_Mutation p.L1702F 0.27 tolerated(0.22) benign(0.006) TCGA-W3-A825-06 3 131442457 131442457 C T CPNE4 Missense_Mutation p.E65K 0.20 deleterious(0) benign(0.386) TCGA-W3-A825-06 3 133099410 133099410 G A TMEM108 Silent p.Q285Q 0.24 TCGA-W3-A825-06 3 133489414 133489414 G A TF Missense_Mutation p.G562E 0.53 tolerated(0.2) benign(0.004) TCGA-W3-A825-06 3 140251283 140251283 C T CLSTN2 Missense_Mutation p.P488S 0.21 tolerated(0.17) benign(0.223) TCGA-W3-A825-06 3 142074312 142074312 G A XRN1 Silent p.F1233F 0.49 TCGA-W3-A825-06 3 142561784 142561784 A G PCOLCE2 Silent p.I185I 0.74 TCGA-W3-A825-06 3 143708581 143708581 C T C3orf58 Silent p.A397A 0.59 TCGA-W3-A825-06 3 14552719 14552719 G A GRIP2 RNA 0.10 TCGA-W3-A825-06 3 14563294 14563294 C T GRIP2 Intron 0.67 TCGA-W3-A825-06 3 146159552 146159552 C T PLSCR2 3'UTR 0.18 TCGA-W3-A825-06 3 14769981 14769981 G A C3orf20 Missense_Mutation p.E576K 0.15 tolerated(0.18) possibly_damaging(0.828) TCGA-W3-A825-06 3 151085505 151085505 C T MED12L Silent p.S1098S 0.13 TCGA-W3-A825-06 3 151165454 151165454 C T IGSF10 Missense_Mutation p.R772Q 0.12 tolerated(1) benign(0.002) TCGA-W3-A825-06 3 155838553 155838553 G A KCNAB1 Silent p.G51G 0.38 TCGA-W3-A825-06 3 167086302 167086302 C T ZBBX Silent p.E43E 0.11 TCGA-W3-A825-06 3 167189553 167189553 G A SERPINI2 Nonsense_Mutation p.Q24* 0.46 TCGA-W3-A825-06 3 167240254 167240254 C T WDR49 Missense_Mutation p.E523K 0.14 tolerated(0.13) benign(0.008) TCGA-W3-A825-06 3 167293784 167293784 C T WDR49 Missense_Mutation p.M136I 0.47 tolerated(0.06) benign(0.02) TCGA-W3-A825-06 3 168833245 168833245 G A MECOM Silent p.V682V 0.63 TCGA-W3-A825-06 3 168833305 168833305 C T MECOM Silent p.G662G 0.18 TCGA-W3-A825-06 3 179322588 179322588 C T NDUFB5 5'UTR 0.60 TCGA-W3-A825-06 3 181430201 181430201 C T SOX2 Missense_Mutation p.S18L 0.36 tolerated(0.24) benign(0.048) TCGA-W3-A825-06 3 18436239 18436239 G A SATB1 Silent p.L307L 0.14 TCGA-W3-A825-06 3 188406638 188406638 C T LPP Intron 0.39 TCGA-W3-A825-06 3 189702340 189702340 G A LEPREL1 Missense_Mutation p.R410W 0.43 deleterious(0) possibly_damaging(0.762) TCGA-W3-A825-06 3 193007701 193007701 G A ATP13A5 Missense_Mutation p.P999L 0.18 deleterious(0.04) possibly_damaging(0.703) TCGA-W3-A825-06 3 197431988 197431988 G A KIAA0226 Missense_Mutation p.P93L 0.12 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 3 197431989 197431989 G A KIAA0226 Missense_Mutation p.P93S 0.12 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 3 3084744 3084744 G A CNTN4 Silent p.T865T 0.41 TCGA-W3-A825-06 3 38655513 38655513 C T SCN5A Missense_Mutation p.R219Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-W3-A825-06 3 38748794 38748794 G A SCN10A Silent p.P1454P 0.21 TCGA-W3-A825-06 3 38770242 38770242 C T SCN10A Missense_Mutation p.E811K 0.55 tolerated(1) benign(0.009) TCGA-W3-A825-06 3 38941452 38941452 C T SCN11A Missense_Mutation p.S652N 0.48 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 3 39228554 39228554 G A XIRP1 Nonsense_Mutation p.R795* 0.31 TCGA-W3-A825-06 3 39306803 39306803 G A CX3CR1 3'UTR 0.19 TCGA-W3-A825-06 3 39323114 39323114 T A CX3CR1 Nonsense_Mutation p.R25* 0.17 TCGA-W3-A825-06 3 40231831 40231831 G A MYRIP Silent p.E514E 0.33 TCGA-W3-A825-06 3 42700948 42700948 C T ZBTB47 Silent p.S367S 0.62 TCGA-W3-A825-06 3 42739055 42739055 G A HHATL Silent p.I270I 0.24 TCGA-W3-A825-06 3 42906672 42906672 G A ACKR2 Missense_Mutation p.M226I 0.49 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 3 42950335 42950335 G T ZNF662 Nonsense_Mutation p.E89* 0.45 TCGA-W3-A825-06 3 44882590 44882590 C T KIF15 Nonsense_Mutation p.Q1149* 0.27 TCGA-W3-A825-06 3 44951601 44951601 G A TGM4 Silent p.Q449Q 0.53 TCGA-W3-A825-06 3 46245783 46245783 C T CCR1 Missense_Mutation p.E8K 0.20 tolerated(0.48) unknown(0) TCGA-W3-A825-06 3 4714878 4714878 G A ITPR1 Missense_Mutation p.E740K 0.39 tolerated(0.32) benign(0.001) TCGA-W3-A825-06 3 4741596 4741596 C T ITPR1 Missense_Mutation p.P1488S 0.13 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 3 48610479 48610479 C T COL7A1 Missense_Mutation p.G2242E 0.14 probably_damaging(0.931) TCGA-W3-A825-06 3 49049100 49049100 G A WDR6 Missense_Mutation p.D75N 0.45 tolerated(0.22) benign(0.05) TCGA-W3-A825-06 3 49693980 49693980 C T BSN Silent p.L2331L 0.67 TCGA-W3-A825-06 3 49694498 49694498 C T BSN Silent p.P2503P 0.49 TCGA-W3-A825-06 3 50357566 50357566 G A HYAL2 Missense_Mutation p.H119Y 0.21 tolerated(0.13) benign(0.005) TCGA-W3-A825-06 3 51196725 51196725 G A DOCK3 Silent p.V293V 0.36 TCGA-W3-A825-06 3 51263087 51263087 C T DOCK3 Silent p.I420I 0.46 TCGA-W3-A825-06 3 51297629 51297629 C T DOCK3 Silent p.L743L 0.69 TCGA-W3-A825-06 3 51349961 51349961 C T DOCK3 Nonsense_Mutation p.Q1050* 0.52 TCGA-W3-A825-06 3 52425573 52425573 G A DNAH1 Missense_Mutation p.E3336K 0.53 probably_damaging(0.999) TCGA-W3-A825-06 3 52548428 52548428 C T STAB1 Silent p.S1198S 0.53 TCGA-W3-A825-06 3 52794827 52794827 G A NEK4 Missense_Mutation p.S316F 0.51 deleterious(0.04) benign(0.021) TCGA-W3-A825-06 3 54871206 54871206 C T CACNA2D3 Silent p.P473P 0.25 TCGA-W3-A825-06 3 56330423 56330423 C T ERC2 Missense_Mutation p.R233Q 0.32 tolerated(0.13) probably_damaging(0.937) TCGA-W3-A825-06 3 56468960 56468960 G A ERC2 Missense_Mutation p.R26C 0.32 deleterious(0) probably_damaging(0.988) TCGA-W3-A825-06 3 58510264 58510264 G A ACOX2 Missense_Mutation p.P472L 0.27 tolerated(0.18) benign(0.045) TCGA-W3-A825-06 3 58552846 58552846 C T FAM107A Intron 0.57 TCGA-W3-A825-06 3 62503871 62503871 G A CADPS Silent p.I782I 0.56 TCGA-W3-A825-06 3 65372837 65372837 C T MAGI1 Intron 0.26 TCGA-W3-A825-06 3 65416481 65416481 C G MAGI1 Missense_Mutation p.R480P 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-W3-A825-06 3 78988051 78988051 G A ROBO1 Missense_Mutation p.P67S 0.19 tolerated(0.11) possibly_damaging(0.743) TCGA-W3-A825-06 3 88104536 88104536 G T CGGBP1 3'UTR 0.14 TCGA-W3-A825-06 3 97868446 97868446 T C OR5H14 Silent p.L73L 0.21 TCGA-W3-A825-06 3 97887816 97887816 G A OR5H15 Missense_Mutation p.M91I 0.48 tolerated(0.23) benign(0.001) TCGA-W3-A825-06 3 97983591 97983591 G A OR5H6 Missense_Mutation p.E155K 0.19 tolerated(0.52) benign(0.003) TCGA-W3-A825-06 3 99513358 99513358 C T COL8A1 Missense_Mutation p.P205S 0.66 tolerated(0.59) unknown(0) TCGA-W3-A825-06 4 100268284 100268284 G A ADH1C Silent p.I46I 0.68 TCGA-W3-A825-06 4 123329171 123329171 G A ADAD1 Missense_Mutation p.R278K 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A825-06 4 126371784 126371784 G A FAT4 Missense_Mutation p.E3205K 0.71 probably_damaging(0.999) TCGA-W3-A825-06 4 126412458 126412458 G A FAT4 Silent p.R4827R 0.64 TCGA-W3-A825-06 4 156136192 156136192 G A NPY2R Silent p.K367K 0.97 TCGA-W3-A825-06 4 156632250 156632250 G A GUCY1A3 Silent p.R311R 0.96 TCGA-W3-A825-06 4 159568008 159568008 G A RXFP1 Missense_Mutation p.E471K 0.65 deleterious(0.03) possibly_damaging(0.588) TCGA-W3-A825-06 4 160275148 160275148 C T RAPGEF2 Missense_Mutation p.P1373L 0.97 deleterious_low_confidence(0.04) benign(0) TCGA-W3-A825-06 4 169138137 169138137 A G DDX60 Silent p.L1696L 0.71 TCGA-W3-A825-06 4 175899300 175899300 G A ADAM29 3'UTR 0.62 TCGA-W3-A825-06 4 177067286 177067286 T C WDR17 Missense_Mutation p.I581T 0.68 deleterious(0.04) benign(0.007) TCGA-W3-A825-06 4 183960129 183960129 A G FAM92A1P2 RNA 0.63 TCGA-W3-A825-06 4 187177173 187177173 C T KLKB1 Missense_Mutation p.S506F 0.70 deleterious(0.02) benign(0.162) TCGA-W3-A825-06 4 22749332 22749332 C T GBA3 Missense_Mutation p.P234S 0.64 tolerated(0.11) benign(0.003) TCGA-W3-A825-06 4 25785871 25785871 C T SEL1L3 Silent p.L753L 0.65 TCGA-W3-A825-06 4 38776168 38776168 C T TLR10 Silent p.T348T 0.67 TCGA-W3-A825-06 4 39259103 39259103 C T WDR19 Intron 0.92 TCGA-W3-A825-06 4 39471672 39471672 G T LIAS Missense_Mutation p.Q257H 0.70 deleterious(0) probably_damaging(0.987) TCGA-W3-A825-06 4 43032426 43032426 C T GRXCR1 Missense_Mutation p.L248F 0.63 deleterious(0.02) benign(0.134) TCGA-W3-A825-06 4 47643937 47643937 C T CORIN Missense_Mutation p.G733E 0.61 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 4 47655579 47655579 C T CORIN Missense_Mutation p.E612K 0.80 tolerated(0.06) benign(0.144) TCGA-W3-A825-06 4 49000535 49000535 C T CWH43 Missense_Mutation p.R258C 0.74 tolerated(0.18) benign(0.001) TCGA-W3-A825-06 4 69512733 69512733 A C UGT2B15 3'UTR 0.79 TCGA-W3-A825-06 4 69795753 69795753 G A UGT2A3 Silent p.P454P 0.54 TCGA-W3-A825-06 4 69816851 69816851 T A UGT2A3 Nonsense_Mutation p.K210* 0.72 TCGA-W3-A825-06 4 70512654 70512654 C T UGT2A1 Missense_Mutation p.A237T 0.57 tolerated(0.07) benign(0.1) TCGA-W3-A825-06 4 71472172 71472172 C T AMBN Missense_Mutation p.P357S 0.72 deleterious(0.04) probably_damaging(0.995) TCGA-W3-A825-06 4 7774503 7774503 G A AFAP1 Intron 0.62 TCGA-W3-A825-06 4 7873764 7873764 G A AFAP1 Silent p.L14L 0.64 TCGA-W3-A825-06 4 7873772 7873772 G A AFAP1 Missense_Mutation p.L12F 0.63 deleterious(0) unknown(0) TCGA-W3-A825-06 4 79371325 79371325 G A FRAS1 Missense_Mutation p.E2099K 0.69 benign(0.009) TCGA-W3-A825-06 4 79385722 79385722 G A FRAS1 Silent p.V2338V 0.61 TCGA-W3-A825-06 4 80328541 80328541 C T GK2 Missense_Mutation p.E272K 0.72 tolerated(0.88) benign(0.004) TCGA-W3-A825-06 4 84502774 84502774 G A AGPAT9 Missense_Mutation p.D90N 0.63 tolerated(0.3) benign(0.002) TCGA-W3-A825-06 4 88535087 88535087 G A DSPP Missense_Mutation p.G425R 0.68 possibly_damaging(0.487) TCGA-W3-A825-06 4 88535088 88535088 G A DSPP Missense_Mutation p.G425E 0.67 benign(0.28) TCGA-W3-A825-06 5 121786730 121786730 G A SNCAIP Missense_Mutation p.G730R 0.55 deleterious(0.05) probably_damaging(0.912) TCGA-W3-A825-06 5 1264548 1264548 C T TERT Silent p.R938R 0.48 TCGA-W3-A825-06 5 129519919 129519919 C T CHSY3 Intron 0.69 TCGA-W3-A825-06 5 135692628 135692628 C T TRPC7 Missense_Mutation p.D150N 0.68 tolerated(0.08) benign(0.388) TCGA-W3-A825-06 5 137485427 137485427 C T BRD8 Missense_Mutation p.M1060I 0.66 tolerated(0.19) benign(0) TCGA-W3-A825-06 5 13763005 13763005 G A DNAH5 Silent p.F3369F 0.15 TCGA-W3-A825-06 5 139741425 139741425 G A SLC4A9 Missense_Mutation p.E204K 0.62 tolerated(0.2) benign(0.02) TCGA-W3-A825-06 5 140175847 140175847 C T PCDHA2 Missense_Mutation p.P433L 0.05 deleterious_low_confidence(0) possibly_damaging(0.465) TCGA-W3-A825-06 5 140181045 140181045 C T PCDHA3 Missense_Mutation p.S88F 0.64 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-W3-A825-06 5 140181344 140181344 G A PCDHA3 Missense_Mutation p.E188K 0.73 tolerated_low_confidence(0.52) benign(0.007) TCGA-W3-A825-06 5 140181908 140181908 G A PCDHA3 Missense_Mutation p.D376N 0.68 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-W3-A825-06 5 140228660 140228660 C T PCDHA9 Missense_Mutation p.L194F 0.35 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-W3-A825-06 5 140481001 140481001 C T PCDHB3 Silent p.P256P 0.07 TCGA-W3-A825-06 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.63 TCGA-W3-A825-06 5 140503233 140503233 G A PCDHB4 Silent p.L551L 0.15 TCGA-W3-A825-06 5 140503831 140503831 G A PCDHB4 Missense_Mutation p.E751K 0.08 deleterious_low_confidence(0.02) benign(0.052) TCGA-W3-A825-06 5 140531887 140531887 T C PCDHB6 Silent p.S683S 0.09 TCGA-W3-A825-06 5 140604246 140604246 C A PCDHB14 Missense_Mutation p.P390H 0.63 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-A825-06 5 140605117 140605117 G A PCDHB14 Silent p.Q680Q 0.59 TCGA-W3-A825-06 5 150275594 150275594 G A ZNF300 Missense_Mutation p.H419Y 0.53 deleterious(0) probably_damaging(0.996) TCGA-W3-A825-06 5 150901180 150901180 C T FAT2 Silent p.K3658K 0.73 TCGA-W3-A825-06 5 154394524 154394524 C T KIF4B Missense_Mutation p.H369Y 0.09 tolerated(0.19) benign(0.397) TCGA-W3-A825-06 5 156376719 156376719 C T TIMD4 Missense_Mutation p.D235N 0.77 tolerated(0.26) benign(0.045) TCGA-W3-A825-06 5 158603767 158603767 A G RNF145 Missense_Mutation p.L195S 0.62 tolerated(0.12) benign(0.411) TCGA-W3-A825-06 5 15935356 15935356 G A FBXL7 Intron 0.45 TCGA-W3-A825-06 5 169472899 169472899 G A DOCK2 Missense_Mutation p.S1319N 0.69 deleterious(0) possibly_damaging(0.682) TCGA-W3-A825-06 5 170345754 170345754 G A RANBP17 Missense_Mutation p.R331Q 0.56 deleterious(0) benign(0.186) TCGA-W3-A825-06 5 174086 174086 G A PLEKHG4B Silent p.E1069E 0.40 TCGA-W3-A825-06 5 176025885 176025885 G A GPRIN1 Silent p.L317L 0.65 TCGA-W3-A825-06 5 176523670 176523670 C T FGFR4 Missense_Mutation p.P694L 0.58 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 5 179291023 179291023 G A TBC1D9B Missense_Mutation p.R1060C 0.61 deleterious(0) possibly_damaging(0.762) TCGA-W3-A825-06 5 180057594 180057594 C T FLT4 Missense_Mutation p.E121K 0.64 tolerated(0.1) benign(0.023) TCGA-W3-A825-06 5 21975310 21975310 G A CDH12 Missense_Mutation p.P139L 0.51 tolerated(0.15) possibly_damaging(0.658) TCGA-W3-A825-06 5 23509650 23509650 G A PRDM9 Silent p.E47E 0.27 TCGA-W3-A825-06 5 23526741 23526741 G A PRDM9 Missense_Mutation p.G515E 0.24 tolerated(0.28) possibly_damaging(0.559) TCGA-W3-A825-06 5 23526926 23526926 G A PRDM9 Missense_Mutation p.E577K 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-W3-A825-06 5 23527259 23527259 G A PRDM9 Missense_Mutation p.G688R 0.47 deleterious(0.02) probably_damaging(0.993) TCGA-W3-A825-06 5 26903778 26903778 C T CDH9 Missense_Mutation p.D323N 0.26 tolerated(0.29) benign(0.005) TCGA-W3-A825-06 5 33534983 33534983 G A ADAMTS12 Missense_Mutation p.P1521S 0.51 tolerated(0.35) benign(0.079) TCGA-W3-A825-06 5 33937511 33937511 G A RXFP3 Nonsense_Mutation p.W222* 0.39 TCGA-W3-A825-06 5 35968179 35968179 G A UGT3A1 Missense_Mutation p.H85Y 0.43 tolerated(1) benign(0.001) TCGA-W3-A825-06 5 3599515 3599515 G A IRX1 Silent p.K151K 0.48 TCGA-W3-A825-06 5 37309346 37309346 G A NUP155 Silent p.S884S 0.60 TCGA-W3-A825-06 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.28 tolerated(0.36) benign(0.004) TCGA-W3-A825-06 5 38949862 38949862 G A RICTOR Missense_Mutation p.T1363I 0.51 deleterious(0.02) possibly_damaging(0.732) TCGA-W3-A825-06 5 39203048 39203049 - TTATATTTC FYB In_Frame_Ins p.Y14_N15insKKY 0.19 TCGA-W3-A825-06 5 40947863 40947863 G A C7 Missense_Mutation p.G300R 0.23 deleterious(0) possibly_damaging(0.874) TCGA-W3-A825-06 5 41143054 41143054 T A C6 Missense_Mutation p.N893I 0.20 tolerated(0.17) benign(0.002) TCGA-W3-A825-06 5 41153958 41153958 C T C6 Silent p.G748G 0.53 TCGA-W3-A825-06 5 43245995 43245995 G A NIM1K Missense_Mutation p.G40R 0.44 tolerated(0.44) benign(0.001) TCGA-W3-A825-06 5 43280160 43280160 G A NIM1K Missense_Mutation p.D214N 0.26 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 5 45262159 45262159 G A HCN1 Missense_Mutation p.S846L 0.25 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-W3-A825-06 5 453639 453639 C T EXOC3 Silent p.I173I 0.24 TCGA-W3-A825-06 5 484637 484637 G A SLC9A3 Silent p.L310L 0.29 TCGA-W3-A825-06 5 57790369 57790369 G A GAPT Silent p.S2S 0.61 TCGA-W3-A825-06 5 59893725 59893725 G A DEPDC1B Missense_Mutation p.P482L 0.09 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 5 66460635 66460635 C T MAST4 Silent p.F1876F 0.69 TCGA-W3-A825-06 5 68572507 68572507 C T CDK7 Silent p.A334A 0.78 TCGA-W3-A825-06 5 68665386 68665386 G A TAF9 Intron 0.55 TCGA-W3-A825-06 5 71495716 71495716 C T MAP1B Silent p.I2178I 0.62 TCGA-W3-A825-06 5 75936888 75936888 C T IQGAP2 Missense_Mutation p.S685L 0.58 tolerated(0.28) benign(0.002) TCGA-W3-A825-06 5 7709390 7709390 G A ADCY2 Missense_Mutation p.A490T 0.74 deleterious(0.03) benign(0.043) TCGA-W3-A825-06 5 89921010 89921010 C A GPR98 Missense_Mutation p.P208T 0.89 benign(0.006) TCGA-W3-A825-06 5 89985680 89985680 G A GPR98 Missense_Mutation p.E2165K 0.89 possibly_damaging(0.506) TCGA-W3-A825-06 5 9066581 9066581 C T SEMA5A Missense_Mutation p.E751K 0.25 deleterious(0) probably_damaging(0.994) TCGA-W3-A825-06 5 94772588 94772588 G A FAM81B Missense_Mutation p.E291K 0.65 tolerated(0.08) benign(0.053) TCGA-W3-A825-06 5 94820533 94820533 G A TTC37 Silent p.F1316F 0.10 TCGA-W3-A825-06 6 102503418 102503418 T A GRIK2 Missense_Mutation p.F842Y 0.46 deleterious(0.01) possibly_damaging(0.458) TCGA-W3-A825-06 6 105736767 105736767 A T PREP Silent p.I440I 0.20 TCGA-W3-A825-06 6 107391237 107391237 G A BEND3 Silent p.I386I 0.44 TCGA-W3-A825-06 6 109233580 109233580 A G ARMC2 Missense_Mutation p.N390S 0.19 tolerated(0.28) benign(0.046) TCGA-W3-A825-06 6 109274425 109274425 C T ARMC2 Missense_Mutation p.P596S 0.30 tolerated(0.81) benign(0.006) TCGA-W3-A825-06 6 116263563 116263563 T C FRK 3'UTR 0.25 TCGA-W3-A825-06 6 117121913 117121913 G A GPRC6A Missense_Mutation p.S461L 0.30 tolerated(0.07) benign(0.049) TCGA-W3-A825-06 6 117232149 117232149 C T RFX6 Missense_Mutation p.P242S 0.27 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 6 117710960 117710960 C T ROS1 Missense_Mutation p.V438I 0.55 tolerated(0.25) benign(0.02) TCGA-W3-A825-06 6 129635847 129635847 C T LAMA2 Silent p.F1153F 0.51 TCGA-W3-A825-06 6 129766940 129766940 A C LAMA2 Missense_Mutation p.N2135H 0.50 deleterious(0.03) probably_damaging(1) TCGA-W3-A825-06 6 130761907 130761907 C T TMEM200A Missense_Mutation p.R114C 0.24 deleterious(0.01) benign(0.373) TCGA-W3-A825-06 6 132181636 132181636 A G ENPP1 Missense_Mutation p.K302R 0.22 tolerated(0.27) benign(0.073) TCGA-W3-A825-06 6 134349874 134349874 G A SLC2A12 Silent p.I363I 0.23 TCGA-W3-A825-06 6 136599787 136599787 T A BCLAF1 Nonsense_Mutation p.R78* 0.31 TCGA-W3-A825-06 6 136913734 136913734 G A MAP3K5 Missense_Mutation p.S966F 0.24 deleterious(0.01) benign(0.027) TCGA-W3-A825-06 6 143093098 143093098 G A HIVEP2 Silent p.T926T 0.27 TCGA-W3-A825-06 6 143828534 143828534 C T FUCA2 Silent p.P84P 0.16 TCGA-W3-A825-06 6 152469377 152469377 G A SYNE1 Missense_Mutation p.S8260L 0.54 benign(0.087) TCGA-W3-A825-06 6 152583257 152583257 C T SYNE1 Silent p.Q6294Q 0.27 TCGA-W3-A825-06 6 152776599 152776599 C T SYNE1 Missense_Mutation p.E952K 0.62 probably_damaging(0.995) TCGA-W3-A825-06 6 153077379 153077379 C T VIP Missense_Mutation p.S149L 0.49 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 6 154412096 154412096 A G OPRM1 Missense_Mutation p.D311G 0.16 tolerated(0.11) benign(0.064) TCGA-W3-A825-06 6 155577841 155577841 G A TIAM2 Silent p.E1564E 0.13 TCGA-W3-A825-06 6 158505050 158505050 G A SYNJ2 Missense_Mutation p.D1018N 0.50 deleterious(0.03) possibly_damaging(0.747) TCGA-W3-A825-06 6 159655377 159655377 G A FNDC1 Nonsense_Mutation p.W1278* 0.26 TCGA-W3-A825-06 6 160977067 160977067 A T LPA Missense_Mutation p.Y1655N 0.44 tolerated(0.18) probably_damaging(0.976) TCGA-W3-A825-06 6 161160210 161160210 G A PLG Missense_Mutation p.R663Q 0.26 tolerated(0.61) benign(0.086) TCGA-W3-A825-06 6 161653171 161653171 C T AGPAT4 Silent p.G25G 0.59 TCGA-W3-A825-06 6 17539604 17539604 C T CAP2 Silent p.F247F 0.44 TCGA-W3-A825-06 6 25773576 25773576 C T SLC17A4 Silent p.I260I 0.69 TCGA-W3-A825-06 6 2623732 2623732 G T C6orf195 Missense_Mutation p.H109N 0.38 deleterious_low_confidence(0) benign(0.216) TCGA-W3-A825-06 6 2679553 2679553 G A MYLK4 Missense_Mutation p.P283L 0.40 deleterious(0.03) benign(0.439) TCGA-W3-A825-06 6 2890358 2890358 G T SERPINB9 3'UTR 0.50 TCGA-W3-A825-06 6 2890359 2890359 G A SERPINB9 3'UTR 0.52 TCGA-W3-A825-06 6 30673730 30673730 G A MDC1 Missense_Mutation p.T1077I 0.19 tolerated(0.5) benign(0.139) TCGA-W3-A825-06 6 30865878 30865878 C T DDR1 Nonsense_Mutation p.Q755* 0.65 TCGA-W3-A825-06 6 31503091 31503091 G A DDX39B Intron 0.21 TCGA-W3-A825-06 6 31827391 31827391 G A NEU1 3'UTR 0.30 TCGA-W3-A825-06 6 31827392 31827392 G A NEU1 3'UTR 0.30 TCGA-W3-A825-06 6 32041502 32041502 C T RNA5SP206 3'Flank 0.32 TCGA-W3-A825-06 6 34026775 34026775 G A GRM4 Missense_Mutation p.L335F 0.36 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 6 35107896 35107896 T C TCP11 Intron 0.53 TCGA-W3-A825-06 6 35260744 35260744 C T ZNF76 Missense_Mutation p.P418S 0.19 tolerated(1) benign(0.002) TCGA-W3-A825-06 6 35260745 35260745 C T ZNF76 Missense_Mutation p.P418L 0.18 tolerated(0.31) benign(0.084) TCGA-W3-A825-06 6 38690822 38690822 G A DNAH8 5'Flank 0.25 TCGA-W3-A825-06 6 38874107 38874107 C T DNAH8 Missense_Mutation p.T2874I 0.29 probably_damaging(0.94) TCGA-W3-A825-06 6 39513422 39513422 T G KIF6 Silent p.S408S 0.23 TCGA-W3-A825-06 6 40360458 40360458 C T LRFN2 Missense_Mutation p.G532S 0.56 deleterious(0.01) possibly_damaging(0.795) TCGA-W3-A825-06 6 40400383 40400383 G A LRFN2 Missense_Mutation p.S157F 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 6 43250472 43250472 C T TTBK1 Missense_Mutation p.S665F 0.24 possibly_damaging(0.504) TCGA-W3-A825-06 6 43466822 43466822 C T TJAP1 Missense_Mutation p.S28F 0.50 tolerated(0.18) benign(0.203) TCGA-W3-A825-06 6 44248076 44248076 C T TCTE1 Missense_Mutation p.E450K 0.31 tolerated(0.07) benign(0.094) TCGA-W3-A825-06 6 46107842 46107842 G A ENPP4 Silent p.S174S 0.78 TCGA-W3-A825-06 6 47253704 47253704 G A TNFRSF21 Missense_Mutation p.P242S 0.59 tolerated(0.21) benign(0.006) TCGA-W3-A825-06 6 47649280 47649280 G A GPR111 Missense_Mutation p.E329K 0.22 deleterious(0.05) possibly_damaging(0.856) TCGA-W3-A825-06 6 47682505 47682505 G A GPR115 Silent p.R508R 0.30 TCGA-W3-A825-06 6 47763246 47763246 C T OPN5 Missense_Mutation p.H235Y 0.16 deleterious(0.02) possibly_damaging(0.765) TCGA-W3-A825-06 6 52054186 52054186 C T IL17A 3'UTR 0.38 TCGA-W3-A825-06 6 52883289 52883289 G A ICK Missense_Mutation p.P168S 0.22 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 6 52999120 52999120 G A GCM1 Silent p.N26N 0.51 TCGA-W3-A825-06 6 53989551 53989551 C T MLIP Missense_Mutation p.S167L 0.27 deleterious(0) benign(0.371) TCGA-W3-A825-06 6 54254753 54254753 C T TINAG 3'UTR 0.30 TCGA-W3-A825-06 6 55378900 55378900 C T HMGCLL1 Missense_Mutation p.G193E 0.25 tolerated(1) benign(0.001) TCGA-W3-A825-06 6 6305600 6305600 C T F13A1 Silent p.R101R 0.31 TCGA-W3-A825-06 6 70972949 70972949 G A COL9A1 Missense_Mutation p.P465S 0.59 probably_damaging(0.993) TCGA-W3-A825-06 6 74072566 74072566 C T KHDC3L Silent p.F38F 0.41 TCGA-W3-A825-06 6 74079017 74079017 G A OOEP Silent p.I94I 0.16 TCGA-W3-A825-06 6 74472605 74472605 G A CD109 Missense_Mutation p.G333S 0.48 deleterious(0) probably_damaging(0.929) TCGA-W3-A825-06 6 76744436 76744436 G A IMPG1 Nonsense_Mutation p.Q124* 0.61 TCGA-W3-A825-06 6 80626332 80626332 C T ELOVL4 Missense_Mutation p.G313E 0.18 tolerated(0.07) unknown(0) TCGA-W3-A825-06 6 85457758 85457758 G A TBX18 Silent p.I273I 0.63 TCGA-W3-A825-06 6 87726211 87726211 G A HTR1E 3'UTR 0.38 TCGA-W3-A825-06 6 90387318 90387318 G A MDN1 Silent p.I4170I 0.42 TCGA-W3-A825-06 6 90402225 90402225 G A MDN1 Silent p.S3508S 0.20 TCGA-W3-A825-06 6 90660223 90660223 C T BACH2 Silent p.G534G 0.40 TCGA-W3-A825-06 6 91281510 91281510 G A MAP3K7 Missense_Mutation p.A46V 0.34 deleterious(0) benign(0.195) TCGA-W3-A825-06 6 93956552 93956552 C T EPHA7 Missense_Mutation p.R895Q 0.48 tolerated(0.13) benign(0.01) TCGA-W3-A825-06 6 96651091 96651091 C T FUT9 Silent p.G20G 0.22 TCGA-W3-A825-06 7 100678170 100678170 G A MUC17 Missense_Mutation p.G1158E 0.20 unknown(0) TCGA-W3-A825-06 7 100678878 100678878 G A MUC17 Missense_Mutation p.G1394E 0.23 unknown(0) TCGA-W3-A825-06 7 100680474 100680474 C T MUC17 Missense_Mutation p.P1926L 0.23 unknown(0) TCGA-W3-A825-06 7 100682723 100682723 A G MUC17 Missense_Mutation p.T2676A 0.39 unknown(0) TCGA-W3-A825-06 7 100732738 100732738 C T TRIM56 Silent p.F715F 0.11 TCGA-W3-A825-06 7 100852143 100852143 G A PLOD3 Silent p.G593G 0.18 TCGA-W3-A825-06 7 102087133 102087133 C T ORAI2 Silent p.S133S 0.16 TCGA-W3-A825-06 7 107626520 107626520 C T LAMB1 Missense_Mutation p.R208H 0.17 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 107635361 107635361 G A LAMB1 Missense_Mutation p.H132Y 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-W3-A825-06 7 111379293 111379293 G A DOCK4 Missense_Mutation p.P1701L 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-A825-06 7 115596807 115596807 C T TFEC Missense_Mutation p.G103E 0.31 tolerated(0.07) benign(0.03) TCGA-W3-A825-06 7 117062325 117062325 A T ASZ1 Silent p.L98L 0.32 TCGA-W3-A825-06 7 117180284 117180284 C T CFTR Missense_Mutation p.R334W 0.43 deleterious(0) possibly_damaging(0.802) TCGA-W3-A825-06 7 119915599 119915599 C T KCND2 Missense_Mutation p.R305C 0.20 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 122221244 122221244 C T CADPS2 Missense_Mutation p.E442K 0.23 deleterious(0) probably_damaging(0.971) TCGA-W3-A825-06 7 123516930 123516930 G A HYAL4 Silent p.R389R 0.21 TCGA-W3-A825-06 7 131832699 131832699 C T PLXNA4 Silent p.V1608V 0.58 TCGA-W3-A825-06 7 136700438 136700438 C T CHRM2 Nonsense_Mutation p.Q276* 0.28 TCGA-W3-A825-06 7 136700475 136700475 C T CHRM2 Missense_Mutation p.S288L 0.29 tolerated(0.09) benign(0.071) TCGA-W3-A825-06 7 137761327 137761327 C T AKR1D1 Silent p.I21I 0.44 TCGA-W3-A825-06 7 140481408 140481408 G A BRAF Missense_Mutation p.S467L 0.42 deleterious(0.01) possibly_damaging(0.756) TCGA-W3-A825-06 7 141537895 141537895 C T PRSS37 Silent p.L65L 0.17 TCGA-W3-A825-06 7 141730203 141730203 G A MGAM Silent p.R421R 0.26 TCGA-W3-A825-06 7 141730552 141730552 G A MGAM Missense_Mutation p.G489R 0.12 deleterious(0) probably_damaging(0.982) TCGA-W3-A825-06 7 141736628 141736628 G A MGAM Silent p.Q694Q 0.57 TCGA-W3-A825-06 7 141767201 141767201 C T MGAM Intron 0.48 TCGA-W3-A825-06 7 141896591 141896591 G A RP11-1220K2.2 Missense_Mutation p.R1536K 0.40 probably_damaging(0.982) TCGA-W3-A825-06 7 142104539 142104539 G A TRBV6-9 Silent p.L5L 0.41 TCGA-W3-A825-06 7 142180717 142180717 G T TRBV6-5 Missense_Mutation p.H48N 0.18 deleterious(0.02) probably_damaging(0.985) TCGA-W3-A825-06 7 142231654 142231654 G A TRBV10-1 Missense_Mutation p.S88L 0.52 tolerated(0.24) possibly_damaging(0.624) TCGA-W3-A825-06 7 142605934 142605934 G A TRPV5 Missense_Mutation p.R646C 0.11 deleterious(0) probably_damaging(0.953) TCGA-W3-A825-06 7 142643354 142643354 G A KEL Silent p.F418F 0.19 TCGA-W3-A825-06 7 142643371 142643371 C T KEL Missense_Mutation p.E413K 0.31 tolerated(0.28) benign(0.011) TCGA-W3-A825-06 7 142655056 142655056 C T KEL Missense_Mutation p.G177E 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 143013308 143013308 G A CLCN1 Translation_Start_Site p.M1? 0.54 deleterious_low_confidence(0) unknown(0) TCGA-W3-A825-06 7 143013309 143013309 G A CLCN1 Missense_Mutation p.E2K 0.54 tolerated_low_confidence(0.07) unknown(0) TCGA-W3-A825-06 7 143094668 143094668 G A EPHA1 Silent p.L566L 0.46 TCGA-W3-A825-06 7 143140983 143140983 C T TAS2R60 Silent p.F146F 0.68 TCGA-W3-A825-06 7 143747527 143747527 C T OR2A5 Silent p.F11F 0.50 TCGA-W3-A825-06 7 143772195 143772195 G A OR2A25 Missense_Mutation p.E295K 0.59 deleterious(0) possibly_damaging(0.627) TCGA-W3-A825-06 7 147914494 147914494 C T CNTNAP2 Missense_Mutation p.S1042F 0.26 tolerated(0.74) benign(0) TCGA-W3-A825-06 7 149317054 149317054 C G ZNF767 RNA 0.48 TCGA-W3-A825-06 7 149430354 149430354 C T KRBA1 Missense_Mutation p.P770S 0.20 tolerated(0.75) benign(0.144) TCGA-W3-A825-06 7 149485679 149485679 C T SSPO RNA 0.56 TCGA-W3-A825-06 7 150324822 150324822 C T GIMAP6 Silent p.G288G 0.15 TCGA-W3-A825-06 7 150558161 150558161 C T AOC1 Missense_Mutation p.S707F 0.12 deleterious(0) probably_damaging(0.931) TCGA-W3-A825-06 7 150646033 150646033 G A KCNH2 Missense_Mutation p.R835W 0.21 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 150932276 150932276 G A CHPF2 Missense_Mutation p.G136R 0.18 deleterious(0) probably_damaging(0.921) TCGA-W3-A825-06 7 150932277 150932277 G T CHPF2 Missense_Mutation p.G136V 0.18 deleterious(0) benign(0.358) TCGA-W3-A825-06 7 151262958 151262958 G A PRKAG2 Missense_Mutation p.P416L 0.23 deleterious(0) possibly_damaging(0.876) TCGA-W3-A825-06 7 151879578 151879578 A G KMT2C Silent p.G1789G 0.26 TCGA-W3-A825-06 7 151962193 151962193 C T KMT2C Missense_Mutation p.D372N 0.07 probably_damaging(0.928) TCGA-W3-A825-06 7 151970830 151970830 G A KMT2C Silent p.F324F 0.03 TCGA-W3-A825-06 7 154863258 154863258 C T HTR5A Missense_Mutation p.L217F 0.43 deleterious(0.01) possibly_damaging(0.624) TCGA-W3-A825-06 7 157369424 157369424 C T PTPRN2 Silent p.R888R 0.29 TCGA-W3-A825-06 7 16818672 16818672 C T TSPAN13 Silent p.I157I 0.42 TCGA-W3-A825-06 7 17349598 17349598 C T AHR Missense_Mutation p.P35L 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 7 22175740 22175740 G A RAPGEF5 Missense_Mutation p.P625S 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 23293918 23293918 G T GPNMB Missense_Mutation p.K118N 0.40 tolerated(0.06) benign(0.019) TCGA-W3-A825-06 7 24903134 24903134 G A OSBPL3 Missense_Mutation p.P253L 0.15 deleterious(0) possibly_damaging(0.854) TCGA-W3-A825-06 7 2976850 2976850 C T CARD11 Missense_Mutation p.E388K 0.51 deleterious(0.04) benign(0.08) TCGA-W3-A825-06 7 31121365 31121365 C T ADCYAP1R1 Silent p.L108L 0.22 TCGA-W3-A825-06 7 32091189 32091189 C T PDE1C Intron 0.37 TCGA-W3-A825-06 7 34094798 34094798 G A BMPER Silent p.R270R 0.16 TCGA-W3-A825-06 7 36445848 36445848 C T ANLN Silent p.S182S 0.43 TCGA-W3-A825-06 7 36571951 36571951 C T AOAH Splice_Site p.X436_splice 0.14 TCGA-W3-A825-06 7 36677508 36677508 C T AOAH Nonsense_Mutation p.W133* 0.56 TCGA-W3-A825-06 7 37272737 37272737 A C ELMO1 Missense_Mutation p.V171G 0.30 deleterious(0) benign(0.371) TCGA-W3-A825-06 7 37780194 37780194 C T GPR141 Silent p.L67L 0.26 TCGA-W3-A825-06 7 37923955 37923955 A T NME8 Nonsense_Mutation p.R349* 0.39 TCGA-W3-A825-06 7 3991553 3991553 G A SDK1 Splice_Site p.X384_splice 0.21 TCGA-W3-A825-06 7 42949482 42949482 G A C7orf25 Nonsense_Mutation p.Q398* 0.51 TCGA-W3-A825-06 7 4304774 4304774 G A SDK1 Missense_Mutation p.E2134K 0.20 deleterious(0) benign(0.139) TCGA-W3-A825-06 7 49977121 49977121 G A ZPBP 3'UTR 0.15 TCGA-W3-A825-06 7 50513548 50513548 T A FIGNL1 Nonsense_Mutation p.K480* 0.25 TCGA-W3-A825-06 7 53103759 53103759 G A POM121L12 Missense_Mutation p.R132Q 0.33 tolerated(0.42) possibly_damaging(0.776) TCGA-W3-A825-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.64 TCGA-W3-A825-06 7 6085778 6085778 C T EIF2AK1 Missense_Mutation p.R185K 0.26 tolerated(0.28) benign(0.122) TCGA-W3-A825-06 7 64168470 64168470 T C ZNF107 Silent p.T596T 0.19 TCGA-W3-A825-06 7 64453070 64453070 G A ERV3-1 Missense_Mutation p.S112F 0.24 tolerated(0.05) benign(0.139) TCGA-W3-A825-06 7 66237049 66237049 T C KCTD7 Missense_Mutation p.W55R 0.26 tolerated(0.42) benign(0.021) TCGA-W3-A825-06 7 71135089 71135089 G A WBSCR17 Missense_Mutation p.G467R 0.24 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 7 71175787 71175787 C T WBSCR17 Silent p.A514A 0.23 TCGA-W3-A825-06 7 72178592 72178592 G A TYW1B Missense_Mutation p.P79S 0.65 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 72732697 72732697 G A TRIM50 Silent p.S246S 0.53 TCGA-W3-A825-06 7 73535265 73535265 C T LIMK1 Missense_Mutation p.T556I 0.23 deleterious(0) possibly_damaging(0.813) TCGA-W3-A825-06 7 73927288 73927288 C T GTF2IRD1 Silent p.F84F 0.50 TCGA-W3-A825-06 7 76058829 76058829 C T ZP3 Intron 0.30 TCGA-W3-A825-06 7 81350074 81350074 C T HGF Missense_Mutation p.E420K 0.34 tolerated(0.58) possibly_damaging(0.507) TCGA-W3-A825-06 7 82545129 82545129 C T PCLO Missense_Mutation p.G4058E 0.50 unknown(0) TCGA-W3-A825-06 7 82583366 82583366 C T PCLO Silent p.V2301V 0.24 TCGA-W3-A825-06 7 82583787 82583787 G A PCLO Missense_Mutation p.S2161L 0.26 unknown(0) TCGA-W3-A825-06 7 82584062 82584062 C T PCLO Missense_Mutation p.M2069I 0.21 unknown(0) TCGA-W3-A825-06 7 82784963 82784963 G A PCLO Missense_Mutation p.P332S 0.25 unknown(0) TCGA-W3-A825-06 7 82785382 82785382 T A PCLO Missense_Mutation p.K192I 0.32 unknown(0) TCGA-W3-A825-06 7 87179319 87179319 C T ABCB1 Missense_Mutation p.E468K 0.30 deleterious(0.02) possibly_damaging(0.463) TCGA-W3-A825-06 7 87774506 87774506 C T ADAM22 Missense_Mutation p.P463S 0.24 tolerated(0.41) benign(0.001) TCGA-W3-A825-06 7 87774507 87774507 C T ADAM22 Missense_Mutation p.P463L 0.21 tolerated(0.69) benign(0.001) TCGA-W3-A825-06 7 87837761 87837761 G A SRI Intron 0.42 TCGA-W3-A825-06 7 88965288 88965288 C T ZNF804B Missense_Mutation p.P998S 0.24 tolerated(0.26) benign(0.003) TCGA-W3-A825-06 7 92134140 92134140 G A PEX1 Silent p.V659V 0.15 TCGA-W3-A825-06 7 92734855 92734855 C T SAMD9 Missense_Mutation p.G186R 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 7 98575921 98575921 C T TRRAP Nonsense_Mutation p.Q2818* 0.24 TCGA-W3-A825-06 7 99217397 99217397 C T ZSCAN25 Silent p.P56P 0.26 TCGA-W3-A825-06 7 99361574 99361574 C A CYP3A4 Silent p.T310T 0.27 TCGA-W3-A825-06 7 99565943 99565943 C T AZGP1 Missense_Mutation p.E150K 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-W3-A825-06 7 99691188 99691188 G A MCM7 Intron 0.50 TCGA-W3-A825-06 8 100523667 100523667 T - VPS13B Frame_Shift_Del p.L1546* 0.27 TCGA-W3-A825-06 8 101609037 101609037 C T SNX31 Missense_Mutation p.G270R 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 8 102381236 102381236 G T NACAP1 RNA 0.28 TCGA-W3-A825-06 8 102643883 102643883 C A GRHL2 Silent p.R426R 0.30 TCGA-W3-A825-06 8 10468794 10468794 C T RP1L1 Silent p.E938E 0.46 TCGA-W3-A825-06 8 104933994 104933994 C T RIMS2 Silent p.F726F 0.37 TCGA-W3-A825-06 8 106814288 106814288 G A ZFPM2 Missense_Mutation p.D660N 0.31 tolerated(0.1) possibly_damaging(0.663) TCGA-W3-A825-06 8 106815664 106815664 G A ZFPM2 Silent p.G1118G 0.45 TCGA-W3-A825-06 8 110432834 110432834 C A PKHD1L1 Missense_Mutation p.P871Q 0.49 deleterious(0.01) benign(0.04) TCGA-W3-A825-06 8 113293468 113293468 G A CSMD3 Missense_Mutation p.S3148F 0.30 deleterious(0) possibly_damaging(0.616) TCGA-W3-A825-06 8 113933877 113933877 C T CSMD3 Missense_Mutation p.D538N 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-W3-A825-06 8 119391684 119391684 G A SAMD12 Missense_Mutation p.S193F 0.36 tolerated_low_confidence(0.89) benign(0.001) TCGA-W3-A825-06 8 121457512 121457512 C T MRPL13 5'UTR 0.38 TCGA-W3-A825-06 8 124724938 124724938 T C ANXA13 Missense_Mutation p.N65S 0.34 deleterious(0.02) benign(0.133) TCGA-W3-A825-06 8 125083820 125083820 G A FER1L6 Missense_Mutation p.G1347E 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 8 129162430 129162430 G A MIR1208 RNA 0.18 TCGA-W3-A825-06 8 131955704 131955704 G A ADCY8 Missense_Mutation p.L416F 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 8 132991256 132991256 C T EFR3A Nonsense_Mutation p.R497* 0.48 TCGA-W3-A825-06 8 133723133 133723133 G C TMEM71 3'UTR 0.28 TCGA-W3-A825-06 8 134125817 134125817 C T TG Missense_Mutation p.S2575F 0.36 deleterious(0.02) possibly_damaging(0.637) TCGA-W3-A825-06 8 139164748 139164748 G A FAM135B Missense_Mutation p.S657F 0.51 tolerated(0.52) benign(0.007) TCGA-W3-A825-06 8 13947813 13947813 G A SGCZ 3'UTR 0.43 TCGA-W3-A825-06 8 142228128 142228128 G A SLC45A4 Silent p.I486I 0.54 TCGA-W3-A825-06 8 143694691 143694691 C T ARC Silent p.V314V 0.47 TCGA-W3-A825-06 8 145537689 145537689 C G HSF1 Silent p.P452P 0.38 TCGA-W3-A825-06 8 145740797 145740797 G A RECQL4 Missense_Mutation p.P435S 0.33 tolerated(0.16) benign(0.089) TCGA-W3-A825-06 8 145773560 145773560 G A ARHGAP39 Missense_Mutation p.P304S 0.39 deleterious(0) probably_damaging(0.915) TCGA-W3-A825-06 8 18725311 18725311 C T PSD3 Missense_Mutation p.D503N 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-W3-A825-06 8 21844684 21844684 G A XPO7 Missense_Mutation p.R537H 0.04 deleterious(0.05) benign(0.072) TCGA-W3-A825-06 8 22137065 22137065 G A PIWIL2 Missense_Mutation p.E56K 0.26 tolerated_low_confidence(0.43) benign(0.034) TCGA-W3-A825-06 8 22165575 22165575 G A PIWIL2 Missense_Mutation p.D559N 0.49 tolerated(0.1) benign(0.006) TCGA-W3-A825-06 8 22548008 22548008 G A EGR3 Missense_Mutation p.P381L 0.45 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-W3-A825-06 8 27315813 27315813 C T PTK2B Silent p.I939I 0.19 TCGA-W3-A825-06 8 27995239 27995239 C T ELP3 Missense_Mutation p.R311C 0.34 deleterious(0.04) benign(0.261) TCGA-W3-A825-06 8 2824198 2824198 G T CSMD1 Silent p.S2998S 0.13 TCGA-W3-A825-06 8 2876007 2876007 C T CSMD1 Missense_Mutation p.R2674Q 0.33 benign(0.01) TCGA-W3-A825-06 8 2976104 2976104 C T CSMD1 Missense_Mutation p.E2083K 0.49 benign(0.281) TCGA-W3-A825-06 8 32613952 32613952 C T NRG1 Missense_Mutation p.R284W 0.46 deleterious(0) probably_damaging(0.997) TCGA-W3-A825-06 8 36780013 36780013 C T KCNU1 Missense_Mutation p.P868S 0.39 tolerated(0.43) possibly_damaging(0.505) TCGA-W3-A825-06 8 42586865 42586865 G A CHRNB3 Missense_Mutation p.G139R 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 8 42586866 42586866 G A CHRNB3 Missense_Mutation p.G139E 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 8 48875536 48875536 T C MCM4 Missense_Mutation p.V210A 0.32 deleterious(0.01) benign(0.184) TCGA-W3-A825-06 8 55372443 55372443 C T SOX17 Missense_Mutation p.P378L 0.40 tolerated(0.09) probably_damaging(0.995) TCGA-W3-A825-06 8 57354252 57354252 C T PENK Missense_Mutation p.G128E 0.53 tolerated(0.12) benign(0.02) TCGA-W3-A825-06 8 62366700 62366700 G A CLVS1 Missense_Mutation p.D211N 0.52 deleterious(0.03) possibly_damaging(0.728) TCGA-W3-A825-06 8 67040682 67040682 C T TRIM55 Silent p.I104I 0.35 TCGA-W3-A825-06 8 67796099 67796099 C T MCMDC2 Missense_Mutation p.P315S 0.41 deleterious(0) possibly_damaging(0.728) TCGA-W3-A825-06 8 69005875 69005875 G A PREX2 Silent p.E762E 0.53 TCGA-W3-A825-06 8 69017486 69017486 C T PREX2 Intron 0.32 TCGA-W3-A825-06 8 72184010 72184010 G A EYA1 Missense_Mutation p.P317S 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-W3-A825-06 8 75227644 75227644 G A JPH1 Silent p.F197F 0.34 TCGA-W3-A825-06 8 75262618 75262618 G A GDAP1 5'UTR 0.54 TCGA-W3-A825-06 8 75263617 75263617 G A GDAP1 Missense_Mutation p.E76K 0.52 deleterious(0.01) probably_damaging(0.989) TCGA-W3-A825-06 8 77763613 77763613 G A ZFHX4 Missense_Mutation p.E1486K 0.45 possibly_damaging(0.486) TCGA-W3-A825-06 8 77768112 77768112 G A ZFHX4 Silent p.K2985K 0.37 TCGA-W3-A825-06 8 8235133 8235133 C T SGK223 Silent p.G262G 0.30 TCGA-W3-A825-06 8 92972579 92972579 G A RUNX1T1 Missense_Mutation p.S580F 0.50 deleterious(0.01) benign(0.365) TCGA-W3-A825-06 8 95683706 95683706 C T ESRP1 Missense_Mutation p.P420L 0.34 tolerated(0.07) probably_damaging(0.979) TCGA-W3-A825-06 9 113449453 113449453 G A MUSK Missense_Mutation p.S88N 0.62 tolerated_low_confidence(0.67) possibly_damaging(0.494) TCGA-W3-A825-06 9 114803678 114803678 G A SUSD1 3'UTR 0.73 TCGA-W3-A825-06 9 115806393 115806393 G A ZFP37 Missense_Mutation p.P169S 0.78 tolerated(0.28) benign(0.014) TCGA-W3-A825-06 9 120475667 120475667 T C TLR4 Silent p.L421L 0.67 TCGA-W3-A825-06 9 125239378 125239378 C T OR1J1 Silent p.V276V 0.71 TCGA-W3-A825-06 9 125391721 125391721 G A OR1B1 Silent p.L32L 0.57 TCGA-W3-A825-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.55 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 9 130588921 130588921 G A ENG Missense_Mutation p.P131S 0.82 tolerated(0.14) benign(0.016) TCGA-W3-A825-06 9 131235987 131235987 C T ODF2 Silent p.L270L 0.64 TCGA-W3-A825-06 9 134049616 134049616 C T NUP214 Missense_Mutation p.S1023F 0.75 probably_damaging(0.955) TCGA-W3-A825-06 9 137777208 137777208 G A FCN2 Nonsense_Mutation p.W142* 0.82 TCGA-W3-A825-06 9 14797527 14797527 G A FREM1 Missense_Mutation p.P1270S 0.70 deleterious(0) probably_damaging(0.91) TCGA-W3-A825-06 9 14805024 14805024 T A FREM1 Missense_Mutation p.E1134V 0.85 deleterious(0.03) benign(0.288) TCGA-W3-A825-06 9 15047974 15047974 C T RP11-54D18.3 RNA 0.65 TCGA-W3-A825-06 9 21304687 21304687 C T IFNA5 Silent p.%3D 0.65 TCGA-W3-A825-06 9 21367929 21367929 G A IFNA13 Silent p.L27L 0.73 TCGA-W3-A825-06 9 23705065 23705065 G A ELAVL2 Missense_Mutation p.S113F 0.70 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 9 2828681 2828681 G C KIAA0020 Missense_Mutation p.A317G 0.68 tolerated(0.14) benign(0.019) TCGA-W3-A825-06 9 2837265 2837265 T C KIAA0020 Silent p.Q73Q 0.79 TCGA-W3-A825-06 9 37746180 37746180 G A FRMPD1 Missense_Mutation p.R1384Q 0.62 tolerated(0.15) benign(0.015) TCGA-W3-A825-06 9 39085829 39085829 T G CNTNAP3 Intron 0.69 TCGA-W3-A825-06 9 5743686 5743686 C T KIAA1432 Intron 0.62 TCGA-W3-A825-06 9 73426151 73426151 G A TRPM3 Intron 0.64 TCGA-W3-A825-06 9 74526545 74526545 C T C9orf85 5'UTR 0.73 TCGA-W3-A825-06 9 77415264 77415264 C T TRPM6 Missense_Mutation p.G715E 0.69 tolerated(0.08) possibly_damaging(0.703) TCGA-W3-A825-06 9 77416945 77416945 G A TRPM6 Silent p.F626F 0.81 TCGA-W3-A825-06 9 79322806 79322806 C T PRUNE2 Missense_Mutation p.D1462N 0.67 tolerated(0.48) benign(0.009) TCGA-W3-A825-06 9 82333718 82333718 C T TLE4 Silent p.I474I 0.77 TCGA-W3-A825-06 9 93606246 93606246 G A SYK Silent p.R22R 0.77 TCGA-W3-A825-06 X 100125714 100125714 G A NOX1 Silent p.I45I 0.32 TCGA-W3-A825-06 X 100228674 100228674 G A ARL13A 5'UTR 0.43 TCGA-W3-A825-06 X 100291982 100291982 G A TRMT2B Silent p.F173F 0.48 TCGA-W3-A825-06 X 101396105 101396105 C T TCEAL6 Missense_Mutation p.E67K 0.42 tolerated(0.12) benign(0.169) TCGA-W3-A825-06 X 101623492 101623492 G A NXF2B Silent p.S228S 0.16 TCGA-W3-A825-06 X 101970767 101970767 G A GPRASP2 Missense_Mutation p.D324N 0.25 tolerated(0.08) benign(0.037) TCGA-W3-A825-06 X 102318139 102318139 C T BEX1 Missense_Mutation p.E22K 0.36 tolerated(0.3) benign(0.02) TCGA-W3-A825-06 X 105190398 105190398 G A NRK Missense_Mutation p.G1433E 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A825-06 X 105449518 105449518 G A MUM1L1 Silent p.R31R 0.40 TCGA-W3-A825-06 X 106016288 106016288 C T RNF128 Silent p.F210F 0.35 TCGA-W3-A825-06 X 106116998 106116998 G A TBC1D8B Missense_Mutation p.E1056K 0.39 tolerated(0.49) benign(0.003) TCGA-W3-A825-06 X 106186298 106186298 C T MORC4 Missense_Mutation p.G608E 0.32 tolerated(0.12) benign(0.017) TCGA-W3-A825-06 X 106841264 106841264 C T FRMPD3 Nonsense_Mutation p.R752* 0.32 TCGA-W3-A825-06 X 109416728 109416728 T G TMEM164 3'UTR 0.60 TCGA-W3-A825-06 X 11162103 11162103 T G ARHGAP6 Missense_Mutation p.K725Q 0.39 deleterious(0.05) benign(0.391) TCGA-W3-A825-06 X 11162104 11162104 C T ARHGAP6 Silent p.G724G 0.39 TCGA-W3-A825-06 X 111697887 111697887 C T ZCCHC16 5'UTR 0.40 TCGA-W3-A825-06 X 114141174 114141174 G A HTR2C Silent p.V191V 0.38 TCGA-W3-A825-06 X 117676893 117676893 C T DOCK11 Missense_Mutation p.S75L 0.38 tolerated(0.21) possibly_damaging(0.448) TCGA-W3-A825-06 X 118221373 118221373 C T KIAA1210 Missense_Mutation p.V1274I 0.32 tolerated(0.16) possibly_damaging(0.717) TCGA-W3-A825-06 X 118230518 118230518 G A KIAA1210 Missense_Mutation p.S402L 0.38 deleterious(0) possibly_damaging(0.775) TCGA-W3-A825-06 X 118370569 118370569 C T PGRMC1 Silent p.F81F 0.18 TCGA-W3-A825-06 X 118985732 118985732 C T UPF3B Silent p.T87T 0.38 TCGA-W3-A825-06 X 119496063 119496063 C T ATP1B4 Missense_Mutation p.P14S 0.44 deleterious_low_confidence(0) benign(0.371) TCGA-W3-A825-06 X 119500380 119500380 G A ATP1B4 Missense_Mutation p.D22N 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-W3-A825-06 X 12809628 12809628 C T PRPS2 Silent p.I4I 0.41 TCGA-W3-A825-06 X 128896036 128896036 C T XPNPEP2 Missense_Mutation p.S553F 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 X 12903718 12903718 C T TLR7 Missense_Mutation p.P31S 0.36 tolerated(0.38) probably_damaging(1) TCGA-W3-A825-06 X 12905368 12905368 C T TLR7 Nonsense_Mutation p.Q581* 0.41 TCGA-W3-A825-06 X 129200916 129200916 G A ELF4 Missense_Mutation p.P591L 0.40 tolerated(0.35) benign(0.001) TCGA-W3-A825-06 X 129215263 129215263 G A ELF4 Silent p.F14F 0.36 TCGA-W3-A825-06 X 129519224 129519224 G A GPR119 Silent p.L66L 0.41 TCGA-W3-A825-06 X 134679366 134679366 C T DDX26B Missense_Mutation p.H70Y 0.34 deleterious(0.01) probably_damaging(0.912) TCGA-W3-A825-06 X 135592243 135592243 G A HTATSF1 Silent p.R309R 0.33 TCGA-W3-A825-06 X 136649783 136649783 G A ZIC3 Silent p.A311A 0.37 TCGA-W3-A825-06 X 138856935 138856935 C T ATP11C Silent p.R713R 0.39 TCGA-W3-A825-06 X 139038018 139038018 T A CXorf66 3'UTR 0.28 TCGA-W3-A825-06 X 140993832 140993832 C T MAGEC1 Silent p.F214F 0.23 TCGA-W3-A825-06 X 140994976 140994976 C T MAGEC1 Missense_Mutation p.P596S 0.34 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-W3-A825-06 X 140995921 140995921 A T MAGEC1 Nonsense_Mutation p.K911* 0.37 TCGA-W3-A825-06 X 141291451 141291451 G A MAGEC2 Missense_Mutation p.S108L 0.43 tolerated(0.23) possibly_damaging(0.849) TCGA-W3-A825-06 X 142596884 142596884 T A SPANXN3 Missense_Mutation p.K62N 0.38 deleterious(0.04) possibly_damaging(0.774) TCGA-W3-A825-06 X 142716714 142716714 C T SLITRK4 Silent p.R737R 0.43 TCGA-W3-A825-06 X 142795341 142795341 C T SPANXN2 Missense_Mutation p.E113K 0.10 tolerated(0.26) unknown(0) TCGA-W3-A825-06 X 14708921 14708921 C T GLRA2 Silent p.F340F 0.39 TCGA-W3-A825-06 X 14708945 14708945 C T GLRA2 Silent p.F348F 0.36 TCGA-W3-A825-06 X 148048341 148048341 G A AFF2 Missense_Mutation p.A979T 0.38 tolerated(0.49) benign(0.004) TCGA-W3-A825-06 X 148072796 148072796 G A AFF2 Missense_Mutation p.M1290I 0.41 deleterious(0) possibly_damaging(0.475) TCGA-W3-A825-06 X 14868756 14868756 G A FANCB Missense_Mutation p.S456F 0.46 tolerated(0.21) benign(0.052) TCGA-W3-A825-06 X 149963757 149963757 C T CD99L2 Missense_Mutation p.D118N 0.46 deleterious(0.03) possibly_damaging(0.516) TCGA-W3-A825-06 X 150348788 150348788 C T GPR50 Missense_Mutation p.L245F 0.50 deleterious(0.04) possibly_damaging(0.725) TCGA-W3-A825-06 X 150868529 150868529 C T PRRG3 Silent p.F23F 0.41 TCGA-W3-A825-06 X 150868575 150868575 G A PRRG3 Missense_Mutation p.E39K 0.37 deleterious(0) possibly_damaging(0.901) TCGA-W3-A825-06 X 151123348 151123348 C T GABRE Nonsense_Mutation p.W449* 0.33 TCGA-W3-A825-06 X 151869854 151869854 C T MAGEA6 Silent p.L182L 0.45 TCGA-W3-A825-06 X 151896673 151896673 C T MAGEA12 3'Flank 0.46 TCGA-W3-A825-06 X 152128426 152128426 G A ZNF185 Silent p.E562E 0.35 TCGA-W3-A825-06 X 152772005 152772005 T G BGN Missense_Mutation p.L195R 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 X 152818554 152818554 G A ATP2B3 Missense_Mutation p.D629N 0.39 tolerated(0.21) benign(0.009) TCGA-W3-A825-06 X 153134363 153134363 C T L1CAM Missense_Mutation p.A438T 0.36 tolerated(0.38) benign(0.297) TCGA-W3-A825-06 X 153134364 153134364 C T L1CAM Missense_Mutation p.M437I 0.35 tolerated(0.26) benign(0.016) TCGA-W3-A825-06 X 154018285 154018285 C T MPP1 Missense_Mutation p.G142R 0.44 deleterious(0.01) probably_damaging(1) TCGA-W3-A825-06 X 154182272 154182272 C T F8 Missense_Mutation p.E600K 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 X 154563722 154563722 C T CLIC2 Silent p.R5R 0.29 TCGA-W3-A825-06 X 18183115 18183115 T A BEND2 3'UTR 0.24 TCGA-W3-A825-06 X 19449659 19449659 G A MAP3K15 Missense_Mutation p.H355Y 0.30 tolerated(0.64) benign(0.036) TCGA-W3-A825-06 X 19983520 19983520 C T CXorf23 Missense_Mutation p.E306K 0.41 tolerated(0.08) benign(0.343) TCGA-W3-A825-06 X 21874848 21874848 G C YY2 Missense_Mutation p.Q82H 0.33 deleterious(0) probably_damaging(0.996) TCGA-W3-A825-06 X 21874936 21874936 G C YY2 Missense_Mutation p.E112Q 0.38 tolerated(0.11) benign(0.15) TCGA-W3-A825-06 X 22291784 22291784 G A ZNF645 Missense_Mutation p.E226K 0.41 tolerated(0.08) benign(0.389) TCGA-W3-A825-06 X 23740842 23740842 G A ACOT9 Silent p.I143I 0.38 TCGA-W3-A825-06 X 23874499 23874499 C T APOO Missense_Mutation p.V161I 0.39 tolerated(0.15) benign(0.012) TCGA-W3-A825-06 X 23874500 23874500 C T APOO Splice_Site p.X161_splice 0.39 TCGA-W3-A825-06 X 26157543 26157543 G A MAGEB18 Silent p.E147E 0.43 TCGA-W3-A825-06 X 2836090 2836090 G A ARSD Silent p.F206F 0.56 TCGA-W3-A825-06 X 30236697 30236697 C T MAGEB2 5'UTR 0.26 TCGA-W3-A825-06 X 3235395 3235395 G A MXRA5 Silent p.I2109I 0.39 TCGA-W3-A825-06 X 3238924 3238924 G A MXRA5 Missense_Mutation p.A1601V 0.46 tolerated(0.65) benign(0) TCGA-W3-A825-06 X 3239170 3239170 G A MXRA5 Missense_Mutation p.S1519F 0.45 deleterious(0.01) benign(0.305) TCGA-W3-A825-06 X 3240002 3240002 G A MXRA5 Nonsense_Mutation p.R1242* 0.44 TCGA-W3-A825-06 X 3240747 3240747 C T MXRA5 Missense_Mutation p.M993I 0.37 tolerated(0.52) benign(0) TCGA-W3-A825-06 X 32632486 32632486 C T DMD Silent p.R472R 0.32 TCGA-W3-A825-06 X 34148830 34148830 G A FAM47A Silent p.P522P 0.38 TCGA-W3-A825-06 X 34148869 34148869 G A FAM47A Silent p.P509P 0.14 TCGA-W3-A825-06 X 34149387 34149387 G A FAM47A Missense_Mutation p.L337F 0.51 tolerated(0.18) probably_damaging(0.986) TCGA-W3-A825-06 X 35820775 35820775 C T MAGEB16 Silent p.I154I 0.47 TCGA-W3-A825-06 X 35821138 35821138 C T MAGEB16 Silent p.F275F 0.33 TCGA-W3-A825-06 X 37545187 37545187 C T XK 5'UTR 0.27 TCGA-W3-A825-06 X 37850121 37850121 C T CXorf27 Missense_Mutation p.S10L 0.32 deleterious(0.04) unknown(0) TCGA-W3-A825-06 X 37979677 37979677 C T SYTL5 Missense_Mutation p.P577S 0.28 deleterious(0.04) possibly_damaging(0.493) TCGA-W3-A825-06 X 38180285 38180285 G A RPGR Missense_Mutation p.S102L 0.57 benign(0.147) TCGA-W3-A825-06 X 38525386 38525386 G A TSPAN7 Silent p.V31V 0.36 TCGA-W3-A825-06 X 43662644 43662644 G A MAOB Missense_Mutation p.S96L 0.35 tolerated(0.11) benign(0.027) TCGA-W3-A825-06 X 46949323 46949323 C T RGN Silent p.F165F 0.40 TCGA-W3-A825-06 X 47315694 47315694 T A ZNF41 Missense_Mutation p.N59I 0.32 tolerated(0.09) possibly_damaging(0.66) TCGA-W3-A825-06 X 48121223 48121223 C T SSX1 Silent p.F101F 0.45 TCGA-W3-A825-06 X 48378951 48378951 C A PORCN 3'UTR 0.62 TCGA-W3-A825-06 X 48462756 48462756 C T WDR13 Silent p.S417S 0.46 TCGA-W3-A825-06 X 49061623 49061623 C T CACNA1F Missense_Mutation p.E1970K 0.25 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-W3-A825-06 X 49143455 49143455 G A PPP1R3F Missense_Mutation p.G768E 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-A825-06 X 49218323 49218323 G A GAGE12I Missense_Mutation p.E30K 0.26 tolerated(0.39) possibly_damaging(0.529) TCGA-W3-A825-06 X 49355872 49355872 C T GAGE2A Missense_Mutation p.P52S 0.13 tolerated(0.56) probably_damaging(0.999) TCGA-W3-A825-06 X 49955570 49955570 G A AKAP4 3'UTR 0.33 TCGA-W3-A825-06 X 49955571 49955571 G A AKAP4 3'UTR 0.37 TCGA-W3-A825-06 X 50053199 50053199 C T CCNB3 Missense_Mutation p.S677L 0.42 deleterious(0.05) benign(0.247) TCGA-W3-A825-06 X 50556960 50556960 G A SHROOM4 Missense_Mutation p.P20L 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A825-06 X 52682515 52682515 C T SSX7 Missense_Mutation p.G3E 0.40 tolerated(0.14) possibly_damaging(0.842) TCGA-W3-A825-06 X 54277855 54277855 T A WNK3 Missense_Mutation p.N851I 0.48 deleterious(0.02) benign(0.019) TCGA-W3-A825-06 X 54319586 54319586 T G WNK3 Missense_Mutation p.H623P 0.68 deleterious(0.05) possibly_damaging(0.515) TCGA-W3-A825-06 X 64738047 64738047 C T LAS1L Missense_Mutation p.E583K 0.35 tolerated(0.16) benign(0.006) TCGA-W3-A825-06 X 64949363 64949363 C T MSN Missense_Mutation p.P86S 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 X 66863228 66863228 T A AR Missense_Mutation p.F583I 0.48 deleterious(0) probably_damaging(0.998) TCGA-W3-A825-06 X 69459617 69459617 A T AWAT1 Missense_Mutation p.E222V 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A825-06 X 69503408 69503408 G A RAB41 Missense_Mutation p.R129Q 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-W3-A825-06 X 70360581 70360581 C T MED12 Silent p.I2047I 0.25 TCGA-W3-A825-06 X 71825130 71825130 G A PHKA1 Nonsense_Mutation p.R936* 0.45 TCGA-W3-A825-06 X 73963813 73963813 C T KIAA2022 Missense_Mutation p.M193I 0.40 tolerated(0.95) benign(0.001) TCGA-W3-A825-06 X 74641773 74641773 G A ZDHHC15 Silent p.N263N 0.43 TCGA-W3-A825-06 X 76952122 76952122 C T ATRX Missense_Mutation p.E105K 0.42 benign(0.001) TCGA-W3-A825-06 X 78618576 78618576 G A ITM2A Missense_Mutation p.R102C 0.37 deleterious(0.04) benign(0.002) TCGA-W3-A825-06 X 83361413 83361413 C T RPS6KA6 Missense_Mutation p.R442Q 0.38 deleterious(0.03) possibly_damaging(0.899) TCGA-W3-A825-06 X 84586083 84586083 C T POF1B Silent p.V242V 0.40 TCGA-W3-A825-06 X 8538606 8538606 C T KAL1 Nonsense_Mutation p.W332* 0.42 TCGA-W3-A825-06 X 9656150 9656150 C T TBL1X Nonsense_Mutation p.R151* 0.46 TCGA-W3-A825-06 X 9914743 9914743 C T SHROOM2 Silent p.I1539I 0.45 TCGA-W3-A828-06 10 103901266 103901266 C T PPRC1 Missense_Mutation p.P1001S 0.33 tolerated_low_confidence(0.14) possibly_damaging(0.764) TCGA-W3-A828-06 10 103919292 103919292 G A NOLC1 Missense_Mutation p.E276K 0.47 tolerated_low_confidence(0.15) benign(0.292) TCGA-W3-A828-06 10 104183589 104183589 G A CUEDC2 Nonsense_Mutation p.Q208* 0.23 TCGA-W3-A828-06 10 104183590 104183590 G A CUEDC2 Silent p.P207P 0.23 TCGA-W3-A828-06 10 105199573 105199573 C T PDCD11 Missense_Mutation p.L1366F 0.34 deleterious(0.01) possibly_damaging(0.757) TCGA-W3-A828-06 10 105330717 105330717 C T NEURL1 Silent p.L58L 0.27 TCGA-W3-A828-06 10 106125758 106125758 G A CCDC147 Missense_Mutation p.E262K 0.45 deleterious(0) possibly_damaging(0.885) TCGA-W3-A828-06 10 113924322 113924322 G A GPAM Missense_Mutation p.S423F 0.20 deleterious(0.01) benign(0.406) TCGA-W3-A828-06 10 11504900 11504900 G A USP6NL Missense_Mutation p.S693F 0.31 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-W3-A828-06 10 115413838 115413838 C T NRAP Missense_Mutation p.G136E 0.37 deleterious(0.04) benign(0.32) TCGA-W3-A828-06 10 115422488 115422488 G A NRAP Missense_Mutation p.H69Y 0.41 tolerated(0.07) benign(0.002) TCGA-W3-A828-06 10 115887427 115887427 G A C10orf118 Missense_Mutation p.S729F 0.24 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 10 118306862 118306862 G A PNLIP Missense_Mutation p.G35R 0.36 deleterious(0.02) possibly_damaging(0.74) TCGA-W3-A828-06 10 12077492 12077492 G A UPF2 5'UTR 0.34 TCGA-W3-A828-06 10 122263398 122263398 C T PPAPDC1A Missense_Mutation p.P42L 0.35 deleterious(0) probably_damaging(0.991) TCGA-W3-A828-06 10 129055662 129055662 G A DOCK1 Missense_Mutation p.D984N 0.36 deleterious(0) benign(0.1) TCGA-W3-A828-06 10 134014349 134014349 G A DPYSL4 Silent p.G324G 0.28 TCGA-W3-A828-06 10 134646883 134646883 G A TTC40 Missense_Mutation p.R2366C 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 10 15258011 15258011 G A FAM171A1 Missense_Mutation p.L324F 0.35 deleterious(0) probably_damaging(0.951) TCGA-W3-A828-06 10 15317910 15317910 C T FAM171A1 Missense_Mutation p.R121H 0.36 deleterious(0) probably_damaging(0.982) TCGA-W3-A828-06 10 16918922 16918922 C T CUBN Missense_Mutation p.G3027E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 10 17087934 17087934 T A CUBN Silent p.T1163T 0.31 TCGA-W3-A828-06 10 1779307 1779307 C T ADARB2 Missense_Mutation p.G13E 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-W3-A828-06 10 18250791 18250791 G T SLC39A12 Missense_Mutation p.Q181H 0.18 deleterious(0.04) possibly_damaging(0.853) TCGA-W3-A828-06 10 18250792 18250792 G T SLC39A12 Splice_Site p.X181_splice 0.19 TCGA-W3-A828-06 10 18840797 18840797 C T NSUN6 Silent p.K342K 0.34 TCGA-W3-A828-06 10 20453447 20453447 C T PLXDC2 Silent p.V278V 0.17 TCGA-W3-A828-06 10 26434420 26434420 A G MYO3A Missense_Mutation p.K821R 0.22 deleterious(0.01) benign(0.068) TCGA-W3-A828-06 10 27389140 27389140 C G ANKRD26 Missense_Mutation p.G39A 0.20 tolerated(0.38) benign(0.155) TCGA-W3-A828-06 10 30336536 30336536 G A KIAA1462 Missense_Mutation p.S69F 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-W3-A828-06 10 31750131 31750131 G A ZEB1 Missense_Mutation p.R75K 0.29 tolerated(0.33) benign(0.002) TCGA-W3-A828-06 10 32311133 32311133 T C KIF5B Missense_Mutation p.K656R 0.38 tolerated(0.11) benign(0.129) TCGA-W3-A828-06 10 37486358 37486358 C T ANKRD30A Missense_Mutation p.S833F 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-W3-A828-06 10 37507968 37507968 G A ANKRD30A Missense_Mutation p.E1054K 0.27 deleterious(0) possibly_damaging(0.636) TCGA-W3-A828-06 10 49812818 49812818 C T ARHGAP22 Silent p.Q8Q 0.23 TCGA-W3-A828-06 10 51464661 51464661 C T AGAP7 Missense_Mutation p.G599R 0.33 tolerated(0.28) benign(0.189) TCGA-W3-A828-06 10 51464778 51464778 T A AGAP7 Missense_Mutation p.T560S 0.15 tolerated(0.78) benign(0.006) TCGA-W3-A828-06 10 55582929 55582929 C T PCDH15 Silent p.E1521E 0.36 TCGA-W3-A828-06 10 61831864 61831864 G A ANK3 Silent p.S2925S 0.19 TCGA-W3-A828-06 10 69281635 69281635 C T CTNNA3 Missense_Mutation p.E182K 0.35 tolerated(0.52) possibly_damaging(0.621) TCGA-W3-A828-06 10 69597729 69597729 T A DNAJC12 Missense_Mutation p.D14V 0.33 deleterious(0) probably_damaging(0.991) TCGA-W3-A828-06 10 69935090 69935090 G A MYPN Missense_Mutation p.G859R 0.32 deleterious(0) possibly_damaging(0.8) TCGA-W3-A828-06 10 70333732 70333732 C T TET1 Missense_Mutation p.S546F 0.23 deleterious(0.01) probably_damaging(0.935) TCGA-W3-A828-06 10 7205668 7205668 C T SFMBT2 3'UTR 0.29 TCGA-W3-A828-06 10 7242422 7242422 C A SFMBT2 Missense_Mutation p.K504N 0.32 tolerated(0.15) benign(0.013) TCGA-W3-A828-06 10 73375331 73375331 G A CDH23 Silent p.R301R 0.26 TCGA-W3-A828-06 10 73545420 73545420 C T CDH23 Silent p.D1920D 0.40 TCGA-W3-A828-06 10 73545421 73545421 C T CDH23 Missense_Mutation p.R1921C 0.40 deleterious(0) possibly_damaging(0.632) TCGA-W3-A828-06 10 75560193 75560193 C T ZSWIM8 Silent p.P1663P 0.27 TCGA-W3-A828-06 10 78674713 78674713 G A KCNMA1 Silent p.I982I 0.32 TCGA-W3-A828-06 10 8051059 8051059 C T TAF3 Silent p.V778V 0.31 TCGA-W3-A828-06 10 81319105 81319105 G A SFTPA2 Silent p.D45D 0.30 TCGA-W3-A828-06 10 82098896 82098896 T A DYDC1 Missense_Mutation p.N119I 0.15 tolerated(0.23) benign(0.008) TCGA-W3-A828-06 10 88459161 88459161 A T LDB3 Intron 0.27 TCGA-W3-A828-06 10 88917829 88917829 G A FAM35A Nonsense_Mutation p.W517* 0.24 TCGA-W3-A828-06 10 88917830 88917830 G A FAM35A Nonsense_Mutation p.W517* 0.24 TCGA-W3-A828-06 10 91143872 91143872 G A IFIT1B Missense_Mutation p.D268N 0.32 tolerated(0.05) benign(0.259) TCGA-W3-A828-06 10 91222224 91222224 G A SLC16A12 Missense_Mutation p.R38W 0.28 tolerated(0.06) benign(0.394) TCGA-W3-A828-06 10 93462 93462 G A TUBB8 Silent p.T290T 0.27 TCGA-W3-A828-06 10 93774 93774 G A TUBB8 Silent p.T186T 0.13 TCGA-W3-A828-06 10 95557432 95557432 G A LGI1 Missense_Mutation p.E516K 0.31 deleterious(0) probably_damaging(0.976) TCGA-W3-A828-06 10 95719086 95719086 C T PIPSL RNA 0.21 TCGA-W3-A828-06 10 95791250 95791250 C T PLCE1 Silent p.F149F 0.23 TCGA-W3-A828-06 10 96005778 96005778 A C PLCE1 Silent p.S832S 0.34 TCGA-W3-A828-06 10 96013947 96013947 G A PLCE1 Missense_Mutation p.G1094S 0.28 tolerated(0.13) probably_damaging(0.991) TCGA-W3-A828-06 10 96748677 96748677 C T CYP2C9 Silent p.N455N 0.33 TCGA-W3-A828-06 10 98807494 98807494 C A SLIT1 Silent p.L529L 0.32 TCGA-W3-A828-06 11 10648010 10648010 C T MRVI1 Missense_Mutation p.E291K 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 11 108129746 108129746 C T ATM Silent p.L804L 0.21 TCGA-W3-A828-06 11 108196791 108196791 G A ATM Missense_Mutation p.E2272K 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-A828-06 11 108196860 108196860 G A ATM Missense_Mutation p.E2295K 0.32 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 11 109294752 109294752 G A C11orf87 Silent p.L131L 0.35 TCGA-W3-A828-06 11 109294753 109294753 G A C11orf87 Missense_Mutation p.E132K 0.36 tolerated(0.2) benign(0.154) TCGA-W3-A828-06 11 111715351 111715351 T C ALG9 Missense_Mutation p.M160V 0.39 tolerated(0.22) benign(0.069) TCGA-W3-A828-06 11 119057201 119057201 G A PDZD3 Silent p.L44L 0.34 TCGA-W3-A828-06 11 119057202 119057202 G A PDZD3 Missense_Mutation p.E45K 0.34 tolerated(0.8) benign(0.002) TCGA-W3-A828-06 11 119183305 119183305 C T MCAM Missense_Mutation p.G265R 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 11 120117193 120117193 G A POU2F3 Missense_Mutation p.D24N 0.37 deleterious(0.04) benign(0.005) TCGA-W3-A828-06 11 120350833 120350833 G A ARHGEF12 Missense_Mutation p.G1311R 0.23 tolerated_low_confidence(0.22) benign(0.002) TCGA-W3-A828-06 11 120996471 120996471 G A TECTA Missense_Mutation p.C555Y 0.26 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 11 120998903 120998903 C T TECTA Silent p.L739L 0.39 TCGA-W3-A828-06 11 123777231 123777231 C T OR8D4 Silent p.F31F 0.33 TCGA-W3-A828-06 11 123810723 123810723 C T OR4D5 Missense_Mutation p.L134F 0.35 deleterious(0) benign(0.004) TCGA-W3-A828-06 11 123894595 123894595 G A OR10G9 Silent p.K292K 0.25 TCGA-W3-A828-06 11 124120983 124120983 C A OR8G1 Silent p.L187L 0.31 TCGA-W3-A828-06 11 124748599 124748599 C T ROBO3 Missense_Mutation p.S1147F 0.48 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 11 125864802 125864802 C T CDON Silent p.E836E 0.37 TCGA-W3-A828-06 11 126176531 126176531 C T DCPS Nonsense_Mutation p.Q90* 0.18 TCGA-W3-A828-06 11 126276855 126276855 C T ST3GAL4 Missense_Mutation p.P40L 0.16 tolerated(0.16) benign(0.002) TCGA-W3-A828-06 11 1270844 1270844 G A MUC5B Missense_Mutation p.G4245E 0.30 possibly_damaging(0.665) TCGA-W3-A828-06 11 133715324 133715324 C T SPATA19 Nonsense_Mutation p.W6* 0.18 TCGA-W3-A828-06 11 133795662 133795662 C T IGSF9B Missense_Mutation p.G669E 0.23 tolerated(0.06) benign(0.076) TCGA-W3-A828-06 11 134151319 134151319 C T GLB1L3 Silent p.F137F 0.40 TCGA-W3-A828-06 11 1606170 1606170 C T KRTAP5-1 Missense_Mutation p.G104S 0.24 tolerated_low_confidence(0.56) unknown(0) TCGA-W3-A828-06 11 1629361 1629361 C T KRTAP5-3 Silent p.G85G 0.30 TCGA-W3-A828-06 11 18478273 18478273 G A LDHAL6A Missense_Mutation p.E16K 0.33 tolerated(0.23) benign(0.001) TCGA-W3-A828-06 11 1858233 1858233 G - SYT8 Frame_Shift_Del p.K294Rfs*49 0.14 TCGA-W3-A828-06 11 18638440 18638440 C T SPTY2D1 Missense_Mutation p.E53K 0.25 deleterious(0.04) benign(0.292) TCGA-W3-A828-06 11 18739598 18739598 C T IGSF22 Missense_Mutation p.D285N 0.39 tolerated(0.44) benign(0.015) TCGA-W3-A828-06 11 19970442 19970443 TA - NAV2 Frame_Shift_Del p.Y844Cfs*16 0.24 TCGA-W3-A828-06 11 20065600 20065600 G A NAV2 Missense_Mutation p.G1017E 0.24 tolerated(0.83) probably_damaging(1) TCGA-W3-A828-06 11 22399081 22399081 A T SLC17A6 Missense_Mutation p.K515I 0.22 deleterious(0) benign(0.269) TCGA-W3-A828-06 11 32635052 32635052 C T CCDC73 Missense_Mutation p.D938N 0.24 tolerated(0.63) benign(0.004) TCGA-W3-A828-06 11 34074001 34074001 A G CAPRIN1 Missense_Mutation p.S12G 0.63 tolerated_low_confidence(0.14) unknown(0) TCGA-W3-A828-06 11 34162732 34162732 C T NAT10 Missense_Mutation p.R897W 0.20 deleterious(0) probably_damaging(0.968) TCGA-W3-A828-06 11 43418267 43418267 C T TTC17 Silent p.S224S 0.19 TCGA-W3-A828-06 11 4388763 4388763 C T OR52B4 Missense_Mutation p.G255R 0.29 tolerated(0.09) probably_damaging(0.931) TCGA-W3-A828-06 11 4608301 4608301 G A OR52I2 Missense_Mutation p.E87K 0.27 deleterious(0.04) benign(0.182) TCGA-W3-A828-06 11 46406905 46406905 C T CHRM4 Silent p.T401T 0.65 TCGA-W3-A828-06 11 4674285 4674285 C T OR51E1 Missense_Mutation p.L177F 0.36 deleterious(0) probably_damaging(0.988) TCGA-W3-A828-06 11 48267239 48267239 G A OR4X2 Missense_Mutation p.G195E 0.30 deleterious(0.02) benign(0.35) TCGA-W3-A828-06 11 4842745 4842745 C T OR51F2 Missense_Mutation p.P44S 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A828-06 11 4869575 4869575 G A OR51S1 Silent p.F288F 0.34 TCGA-W3-A828-06 11 4967872 4967872 C T OR51A4 Silent p.K153K 0.24 TCGA-W3-A828-06 11 51516029 51516029 G T OR4C46 Missense_Mutation p.V250L 0.39 deleterious_low_confidence(0.03) benign(0.068) TCGA-W3-A828-06 11 5173473 5173473 C T OR52A1 Missense_Mutation p.G43R 0.17 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 11 5246760 5246760 C T HBB 3'UTR 0.32 TCGA-W3-A828-06 11 5462267 5462267 G A OR51I1 Missense_Mutation p.P160S 0.35 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 11 55135429 55135429 C T OR4A15 Missense_Mutation p.P24S 0.33 tolerated_low_confidence(0.36) benign(0) TCGA-W3-A828-06 11 55322397 55322397 C A OR4C15 Silent p.G205G 0.31 TCGA-W3-A828-06 11 5537331 5537331 C T UBQLNL Missense_Mutation p.R114Q 0.31 tolerated(1) benign(0) TCGA-W3-A828-06 11 55595119 55595119 T C OR5L2 Missense_Mutation p.V142A 0.14 tolerated(0.7) benign(0.015) TCGA-W3-A828-06 11 55761713 55761713 A C OR5F1 Missense_Mutation p.L130R 0.34 deleterious(0) probably_damaging(0.952) TCGA-W3-A828-06 11 56000521 56000521 T G OR5T2 Missense_Mutation p.E47D 0.33 tolerated(0.09) benign(0.029) TCGA-W3-A828-06 11 56043627 56043627 T G OR5T1 Missense_Mutation p.H171Q 0.28 deleterious(0.04) benign(0.26) TCGA-W3-A828-06 11 56114391 56114391 C T OR8K1 Missense_Mutation p.P293S 0.31 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-W3-A828-06 11 56128657 56128657 C A OR8J1 Missense_Mutation p.S312Y 0.19 tolerated(0.88) benign(0.181) TCGA-W3-A828-06 11 56143574 56143574 C T OR8U1 Missense_Mutation p.H159Y 0.07 tolerated(0.6) probably_damaging(0.944) TCGA-W3-A828-06 11 56230146 56230146 C T OR5M9 Silent p.T244T 0.36 TCGA-W3-A828-06 11 56237125 56237125 C T OR5M3 Silent p.L283L 0.11 TCGA-W3-A828-06 11 56310499 56310499 G A OR5M11 Missense_Mutation p.P79S 0.35 deleterious(0) probably_damaging(0.973) TCGA-W3-A828-06 11 56468517 56468517 C T OR9G1 Silent p.L218L 0.07 TCGA-W3-A828-06 11 56510601 56510601 G A OR9G4 Silent p.I229I 0.32 TCGA-W3-A828-06 11 57080574 57080574 C T TNKS1BP1 Missense_Mutation p.G530R 0.38 deleterious(0.04) benign(0.413) TCGA-W3-A828-06 11 57947792 57947792 G A OR9Q1 Silent p.R292R 0.33 TCGA-W3-A828-06 11 5810002 5810002 G A OR52N1 Silent p.I15I 0.29 TCGA-W3-A828-06 11 59425147 59425147 G A PATL1 Silent p.P159P 0.38 TCGA-W3-A828-06 11 59425148 59425148 G A PATL1 Missense_Mutation p.P159L 0.37 tolerated(0.18) benign(0.023) TCGA-W3-A828-06 11 59863077 59863077 C T MS4A2 Missense_Mutation p.T228I 0.27 tolerated(1) benign(0) TCGA-W3-A828-06 11 6129311 6129311 C T OR56B4 Silent p.P101P 0.22 TCGA-W3-A828-06 11 6191094 6191094 A C OR52B2 Missense_Mutation p.F155V 0.34 tolerated(0.07) benign(0.009) TCGA-W3-A828-06 11 62292905 62292905 G A AHNAK Missense_Mutation p.P2995L 0.38 probably_damaging(0.982) TCGA-W3-A828-06 11 62519666 62519666 G A ZBTB3 Silent p.L541L 0.24 TCGA-W3-A828-06 11 6414452 6414452 G A SMPD1 Silent p.G366G 0.33 TCGA-W3-A828-06 11 64702221 64702221 G A GPHA2 3'UTR 0.33 TCGA-W3-A828-06 11 65374224 65374224 C T MAP3K11 Missense_Mutation p.R514K 0.28 tolerated(0.75) benign(0) TCGA-W3-A828-06 11 65618294 65618294 G A SNX32 Missense_Mutation p.E191K 0.33 tolerated(0.06) possibly_damaging(0.819) TCGA-W3-A828-06 11 65688806 65688806 C T DRAP1 Missense_Mutation p.P173L 0.41 tolerated_low_confidence(0.42) unknown(0) TCGA-W3-A828-06 11 65729298 65729298 C A SART1 Missense_Mutation p.T16K 0.31 tolerated_low_confidence(0.35) possibly_damaging(0.557) TCGA-W3-A828-06 11 66360366 66360366 C T CCDC87 Missense_Mutation p.E41K 0.34 tolerated(0.34) benign(0.003) TCGA-W3-A828-06 11 6645067 6645067 C T DCHS1 Missense_Mutation p.D2614N 0.38 tolerated(0.79) benign(0.036) TCGA-W3-A828-06 11 67079288 67079288 C T SSH3 Missense_Mutation p.S637F 0.28 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-W3-A828-06 11 67173087 67173087 G A TBC1D10C Missense_Mutation p.D128N 0.33 deleterious(0.02) possibly_damaging(0.799) TCGA-W3-A828-06 11 67352042 67352043 - T GSTP1 Splice_Site p.X48_splice 0.39 TCGA-W3-A828-06 11 6806875 6806875 G A OR2AG1 Missense_Mutation p.G203S 0.26 tolerated(0.34) possibly_damaging(0.562) TCGA-W3-A828-06 11 6867415 6867415 C T OR10A5 Missense_Mutation p.P168S 0.29 deleterious(0.05) possibly_damaging(0.764) TCGA-W3-A828-06 11 6897974 6897974 C T OR10A4 Silent p.F32F 0.30 TCGA-W3-A828-06 11 7024016 7024016 C T ZNF214 Nonsense_Mutation p.W17* 0.34 TCGA-W3-A828-06 11 73849835 73849835 T G C2CD3 Silent p.T295T 0.39 TCGA-W3-A828-06 11 74716521 74716521 C T NEU3 Missense_Mutation p.P124S 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 11 74800516 74800516 G A OR2AT4 Silent p.T81T 0.42 TCGA-W3-A828-06 11 75439856 75439856 C T MOGAT2 Silent p.F224F 0.39 TCGA-W3-A828-06 11 76867815 76867815 C T MYO7A Missense_Mutation p.P194S 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 11 76867816 76867816 C T MYO7A Missense_Mutation p.P194L 0.37 deleterious(0) probably_damaging(0.99) TCGA-W3-A828-06 11 77921300 77921300 G A USP35 Missense_Mutation p.G800E 0.27 tolerated(0.61) probably_damaging(0.997) TCGA-W3-A828-06 11 78380661 78380661 G A TENM4 Silent p.D2243D 0.33 TCGA-W3-A828-06 11 7981528 7981528 T A NLRP10 Missense_Mutation p.D544V 0.25 deleterious(0) possibly_damaging(0.878) TCGA-W3-A828-06 11 8060558 8060558 G A TUB Silent p.R46R 0.29 TCGA-W3-A828-06 11 82643195 82643195 A T C11orf82 Missense_Mutation p.Q272L 0.24 deleterious(0) possibly_damaging(0.848) TCGA-W3-A828-06 11 82876727 82876727 C T PCF11 Missense_Mutation p.P263L 0.15 tolerated(0.14) benign(0.007) TCGA-W3-A828-06 11 9164968 9164968 G A DENND5A Silent p.F1123F 0.30 TCGA-W3-A828-06 11 92534011 92534011 C A FAT3 Missense_Mutation p.A2611E 0.28 possibly_damaging(0.883) TCGA-W3-A828-06 11 9459735 9459735 C T IPO7 Silent p.I866I 0.24 TCGA-W3-A828-06 11 9829691 9829691 C T SBF2 Silent p.R1433R 0.36 TCGA-W3-A828-06 12 100451929 100451929 G A UHRF1BP1L Silent p.T1042T 0.36 TCGA-W3-A828-06 12 100649929 100649929 G A DEPDC4 Missense_Mutation p.P259L 0.33 tolerated(0.07) benign(0.162) TCGA-W3-A828-06 12 100774643 100774643 C T SLC17A8 Missense_Mutation p.S89F 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 101603616 101603616 G A SLC5A8 Missense_Mutation p.P4L 0.46 deleterious(0.03) benign(0.003) TCGA-W3-A828-06 12 101745856 101745856 C T UTP20 Silent p.A1636A 0.35 TCGA-W3-A828-06 12 104171633 104171633 G A NT5DC3 Missense_Mutation p.L541F 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-W3-A828-06 12 104391300 104391300 C T GLT8D2 Missense_Mutation p.R139Q 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 105151280 105151280 A C CHST11 Missense_Mutation p.E253A 0.34 tolerated(0.45) benign(0.033) TCGA-W3-A828-06 12 106890667 106890667 G A POLR3B Silent p.G985G 0.32 TCGA-W3-A828-06 12 107048075 107048075 G A RFX4 Silent p.L96L 0.31 TCGA-W3-A828-06 12 107236475 107236479 GCCCA - RIC8B Frame_Shift_Del p.P316* 0.31 TCGA-W3-A828-06 12 108642137 108642137 G A WSCD2 3'UTR 0.50 TCGA-W3-A828-06 12 109293195 109293195 C T DAO Missense_Mutation p.R286C 0.15 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 12 109530452 109530452 C T ALKBH2 Missense_Mutation p.G47E 0.39 tolerated_low_confidence(0.81) benign(0.002) TCGA-W3-A828-06 12 110466361 110466361 C T ANKRD13A Silent p.I330I 0.39 TCGA-W3-A828-06 12 111296421 111296421 G A CCDC63 Missense_Mutation p.D71N 0.17 tolerated(0.22) benign(0.023) TCGA-W3-A828-06 12 111342466 111342466 G A CCDC63 Missense_Mutation p.E473K 0.36 tolerated(0.22) benign(0.067) TCGA-W3-A828-06 12 112119624 112119624 G A BRAP Missense_Mutation p.T87I 0.48 tolerated(0.17) benign(0.008) TCGA-W3-A828-06 12 113543686 113543686 C T RASAL1 Missense_Mutation p.G556S 0.25 tolerated(0.34) benign(0.056) TCGA-W3-A828-06 12 113553763 113553763 C T RASAL1 Missense_Mutation p.M275I 0.38 tolerated(0.05) benign(0.016) TCGA-W3-A828-06 12 113835068 113835068 C T SDS Nonsense_Mutation p.W185* 0.36 TCGA-W3-A828-06 12 11506909 11506909 C T PRB1 Missense_Mutation p.G43E 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-W3-A828-06 12 117290386 117290386 G A RNFT2 3'Flank 0.27 TCGA-W3-A828-06 12 118199050 118199050 G A KSR2 Missense_Mutation p.S251L 0.46 tolerated(0.1) possibly_damaging(0.895) TCGA-W3-A828-06 12 119631607 119631607 G A HSPB8 Missense_Mutation p.E179K 0.25 deleterious(0.01) benign(0.021) TCGA-W3-A828-06 12 123915092 123915092 G A RILPL2 Missense_Mutation p.L152F 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-W3-A828-06 12 124228834 124228834 C T ATP6V0A2 Missense_Mutation p.L426F 0.37 deleterious(0.04) possibly_damaging(0.452) TCGA-W3-A828-06 12 130184924 130184924 G A TMEM132D Silent p.I133I 0.14 TCGA-W3-A828-06 12 130884314 130884314 C T RIMBP2 Silent p.L1014L 0.37 TCGA-W3-A828-06 12 131487829 131487829 G A GPR133 Missense_Mutation p.G376S 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-W3-A828-06 12 132401127 132401127 C T ULK1 Missense_Mutation p.P688L 0.21 tolerated(0.58) benign(0.11) TCGA-W3-A828-06 12 133250268 133250268 G A POLE Missense_Mutation p.P418S 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 133313584 133313584 G A ANKLE2 Silent p.S496S 0.33 TCGA-W3-A828-06 12 133385023 133385023 G A GOLGA3 Missense_Mutation p.S211F 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-W3-A828-06 12 13715846 13715846 G A GRIN2B Silent p.F1442F 0.37 TCGA-W3-A828-06 12 19427499 19427499 A G PLEKHA5 Missense_Mutation p.I299V 0.39 tolerated(0.68) benign(0.006) TCGA-W3-A828-06 12 19653123 19653123 G A AEBP2 Missense_Mutation p.G423R 0.18 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-W3-A828-06 12 21015389 21015389 C T SLCO1B3 Silent p.F175F 0.32 TCGA-W3-A828-06 12 21176202 21176202 T A SLCO1B7 Missense_Mutation p.D189E 0.12 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 23699272 23699272 G A SOX5 Silent p.F525F 0.32 TCGA-W3-A828-06 12 25241033 25241033 G A LRMP Splice_Site p.X106_splice 0.17 TCGA-W3-A828-06 12 30868052 30868052 T C CAPRIN2 Missense_Mutation p.I781V 0.31 tolerated(1) benign(0.019) TCGA-W3-A828-06 12 32134497 32134497 C T KIAA1551 Missense_Mutation p.S203F 0.34 deleterious(0) probably_damaging(0.983) TCGA-W3-A828-06 12 347143 347143 G A SLC6A13 Missense_Mutation p.S171F 0.34 tolerated(0.07) possibly_damaging(0.672) TCGA-W3-A828-06 12 3649898 3649898 G A PRMT8 Missense_Mutation p.E68K 0.33 deleterious(0.05) benign(0.015) TCGA-W3-A828-06 12 39703386 39703386 A G KIF21A Splice_Site p.X1426_splice 0.36 TCGA-W3-A828-06 12 41422940 41422940 C T CNTN1 Missense_Mutation p.P967S 0.24 deleterious(0.01) probably_damaging(0.919) TCGA-W3-A828-06 12 42717846 42717846 G A ZCRB1 Missense_Mutation p.S20F 0.32 deleterious(0) possibly_damaging(0.894) TCGA-W3-A828-06 12 46298835 46298835 G A ARID2 Missense_Mutation p.E1828K 0.35 deleterious_low_confidence(0.02) benign(0.156) TCGA-W3-A828-06 12 4657945 4657945 C T RAD51AP1 Missense_Mutation p.L184F 0.34 deleterious(0.05) benign(0.132) TCGA-W3-A828-06 12 48063957 48063957 G A RPAP3 Missense_Mutation p.P487S 0.39 tolerated(0.14) probably_damaging(0.968) TCGA-W3-A828-06 12 49432321 49432321 G A KMT2D Missense_Mutation p.P2940S 0.26 benign(0.23) TCGA-W3-A828-06 12 50190090 50190090 C T NCKAP5L Missense_Mutation p.G518D 0.30 tolerated(0.17) possibly_damaging(0.558) TCGA-W3-A828-06 12 5020638 5020638 G A KCNA1 Missense_Mutation p.D32N 0.16 tolerated(0.2) benign(0.024) TCGA-W3-A828-06 12 51868975 51868975 T G SLC4A8 Silent p.R719R 0.26 TCGA-W3-A828-06 12 52450343 52450343 G A NR4A1 Missense_Mutation p.D371N 0.33 deleterious(0.03) benign(0.119) TCGA-W3-A828-06 12 52699111 52699111 A G KRT86 Missense_Mutation p.I275V 0.30 tolerated(0.8) benign(0.003) TCGA-W3-A828-06 12 52788854 52788854 G A KRT82 Missense_Mutation p.P483S 0.27 tolerated(0.27) benign(0.048) TCGA-W3-A828-06 12 52910475 52910475 G A KRT5 Missense_Mutation p.A462V 0.34 deleterious(0) possibly_damaging(0.85) TCGA-W3-A828-06 12 52914122 52914122 G A KRT5 5'UTR 0.60 TCGA-W3-A828-06 12 53647244 53647244 C T MFSD5 Missense_Mutation p.P316S 0.37 tolerated(0.57) possibly_damaging(0.453) TCGA-W3-A828-06 12 54675906 54675906 G A HNRNPA1 Silent p.V104V 0.45 TCGA-W3-A828-06 12 54686185 54686185 C T NFE2 Silent p.R365R 0.26 TCGA-W3-A828-06 12 54798519 54798519 C T ITGA5 Missense_Mutation p.G462E 0.21 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 54798520 54798520 C T ITGA5 Missense_Mutation p.G462R 0.21 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-W3-A828-06 12 55794837 55794837 C T OR6C65 Silent p.F175F 0.40 TCGA-W3-A828-06 12 56094881 56094881 C T ITGA7 Missense_Mutation p.D158N 0.25 deleterious(0.03) probably_damaging(1) TCGA-W3-A828-06 12 56848374 56848374 G A MIP Silent p.S8S 0.38 TCGA-W3-A828-06 12 56982785 56982785 T G RBMS2 Missense_Mutation p.F405V 0.36 tolerated_low_confidence(0.49) benign(0.086) TCGA-W3-A828-06 12 57345906 57345906 G A RDH16 Silent p.A287A 0.53 TCGA-W3-A828-06 12 57422441 57422441 G A MYO1A 3'UTR 0.22 TCGA-W3-A828-06 12 57441143 57441143 C T MYO1A Missense_Mutation p.G125E 0.28 tolerated(0.07) possibly_damaging(0.768) TCGA-W3-A828-06 12 57453733 57453733 C A TMEM194A Nonsense_Mutation p.E422* 0.39 TCGA-W3-A828-06 12 57828580 57828580 G A INHBC 5'UTR 0.44 TCGA-W3-A828-06 12 57828581 57828581 G A INHBC 5'UTR 0.44 TCGA-W3-A828-06 12 58016844 58016844 C T SLC26A10 Missense_Mutation p.S326F 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 12 662733 662733 G A B4GALNT3 Silent p.R548R 0.31 TCGA-W3-A828-06 12 66703648 66703648 G A HELB Missense_Mutation p.E314K 0.33 tolerated(0.1) benign(0.033) TCGA-W3-A828-06 12 674619 674619 G A NINJ2 Intron 0.48 TCGA-W3-A828-06 12 6752821 6752821 G A ACRBP Missense_Mutation p.H321Y 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-W3-A828-06 12 6755999 6755999 G A ACRBP Nonsense_Mutation p.Q75* 0.23 TCGA-W3-A828-06 12 6756000 6756000 G A ACRBP Silent p.V74V 0.23 TCGA-W3-A828-06 12 6804637 6804637 C T PIANP Silent p.G262G 0.32 TCGA-W3-A828-06 12 6883956 6883956 C A LAG3 Missense_Mutation p.S236Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-W3-A828-06 12 69113148 69113148 C T NUP107 Nonsense_Mutation p.Q371* 0.29 TCGA-W3-A828-06 12 71029613 71029613 C T PTPRB Missense_Mutation p.D97N 0.28 tolerated_low_confidence(0.16) benign(0.002) TCGA-W3-A828-06 12 72771779 72771779 G A TRHDE Missense_Mutation p.R353Q 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-W3-A828-06 12 73056985 73056985 C T TRHDE 3'UTR 0.42 TCGA-W3-A828-06 12 7655130 7655130 G A CD163 Missense_Mutation p.P26L 0.40 tolerated_low_confidence(0.16) benign(0.014) TCGA-W3-A828-06 12 78522517 78522517 G T NAV3 Nonsense_Mutation p.E1438* 0.43 TCGA-W3-A828-06 12 81536964 81536964 C T ACSS3 Missense_Mutation p.P287S 0.36 tolerated(0.21) benign(0.078) TCGA-W3-A828-06 12 8212620 8212620 C T C3AR1 Silent p.R54R 0.31 TCGA-W3-A828-06 12 89917340 89917340 T A GALNT4 Silent p.T329T 0.32 TCGA-W3-A828-06 12 97093833 97093833 C T C12orf55 Missense_Mutation p.P2146S 0.36 tolerated(1) benign(0.001) TCGA-W3-A828-06 12 9913424 9913424 C T CD69 5'UTR 0.34 TCGA-W3-A828-06 13 101747931 101747931 C T NALCN Missense_Mutation p.R1088H 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 13 108882277 108882277 C T ABHD13 Silent p.Y237Y 0.43 TCGA-W3-A828-06 13 110829335 110829335 C T COL4A1 Silent p.L922L 0.48 TCGA-W3-A828-06 13 110829358 110829358 C T COL4A1 Missense_Mutation p.G915R 0.44 probably_damaging(1) TCGA-W3-A828-06 13 19751322 19751322 G A TUBA3C Silent p.F267F 0.37 TCGA-W3-A828-06 13 20038609 20038609 C T TPTE2 Missense_Mutation p.R243K 0.23 deleterious(0) probably_damaging(0.983) TCGA-W3-A828-06 13 20279956 20279956 G T PSPC1 Missense_Mutation p.A411D 0.12 tolerated(0.08) possibly_damaging(0.829) TCGA-W3-A828-06 13 21364609 21364609 G A XPO4 Missense_Mutation p.L970F 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-W3-A828-06 13 26621047 26621047 G A SHISA2 Silent p.I164I 0.24 TCGA-W3-A828-06 13 32376541 32376541 A G RXFP2 Nonstop_Mutation p.*755Wext*22 0.28 TCGA-W3-A828-06 13 33635816 33635816 C T KL Missense_Mutation p.P867L 0.27 deleterious(0.01) possibly_damaging(0.517) TCGA-W3-A828-06 13 37269422 37269422 C T SERTM1 Silent p.I69I 0.32 TCGA-W3-A828-06 13 38266159 38266159 C T TRPC4 Nonsense_Mutation p.W404* 0.37 TCGA-W3-A828-06 13 41808047 41808047 T G MTRF1 Silent p.R323R 0.31 TCGA-W3-A828-06 13 42460923 42460923 G A VWA8 Missense_Mutation p.A287V 0.33 tolerated(0.18) benign(0.002) TCGA-W3-A828-06 13 46559867 46559867 C T ZC3H13 Missense_Mutation p.D429N 0.29 unknown(0) TCGA-W3-A828-06 13 46559868 46559868 C T ZC3H13 Silent p.K428K 0.29 TCGA-W3-A828-06 13 46641527 46641527 C T CPB2 Missense_Mutation p.G206E 0.19 tolerated(0.69) benign(0.007) TCGA-W3-A828-06 13 46641528 46641528 C T CPB2 Missense_Mutation p.G206R 0.19 tolerated(0.44) benign(0.007) TCGA-W3-A828-06 13 46722573 46722573 C T LCP1 Missense_Mutation p.A298T 0.26 tolerated(0.08) possibly_damaging(0.468) TCGA-W3-A828-06 13 49281980 49281980 G A CYSLTR2 Missense_Mutation p.E343K 0.28 tolerated_low_confidence(0.06) benign(0.02) TCGA-W3-A828-06 13 51855378 51855378 G A FAM124A Missense_Mutation p.E579K 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-A828-06 13 52673960 52673960 C T NEK5 Silent p.R315R 0.32 TCGA-W3-A828-06 13 67799944 67799944 G A PCDH9 Missense_Mutation p.P877S 0.24 tolerated(0.32) probably_damaging(0.985) TCGA-W3-A828-06 13 72134009 72134009 G A DACH1 Missense_Mutation p.R462C 0.24 probably_damaging(0.962) TCGA-W3-A828-06 13 72147056 72147056 C T DACH1 Missense_Mutation p.M407I 0.33 possibly_damaging(0.748) TCGA-W3-A828-06 13 76395640 76395640 C T LMO7 Silent p.P612P 0.41 TCGA-W3-A828-06 13 76395723 76395723 C T LMO7 Missense_Mutation p.S640L 0.42 deleterious(0) benign(0.277) TCGA-W3-A828-06 13 84453891 84453891 C T SLITRK1 Silent p.R584R 0.67 TCGA-W3-A828-06 13 96443190 96443190 G A DNAJC3 Missense_Mutation p.G474D 0.38 deleterious(0.05) probably_damaging(0.952) TCGA-W3-A828-06 13 99037948 99037948 C T FARP1 Silent p.F213F 0.52 TCGA-W3-A828-06 14 100380915 100380915 G A EML1 Missense_Mutation p.E564K 0.22 deleterious(0.01) possibly_damaging(0.823) TCGA-W3-A828-06 14 100613156 100613156 G A DEGS2 Missense_Mutation p.S305F 0.19 deleterious(0.01) benign(0.013) TCGA-W3-A828-06 14 101347492 101347492 G A RTL1 Missense_Mutation p.P1212S 0.40 tolerated_low_confidence(0.06) benign(0.017) TCGA-W3-A828-06 14 102676019 102676019 C T WDR20 Silent p.D535D 0.60 TCGA-W3-A828-06 14 103596137 103596137 C T TNFAIP2 Silent p.L307L 0.34 TCGA-W3-A828-06 14 103996498 103996498 C T TRMT61A Silent p.G61G 0.27 TCGA-W3-A828-06 14 105174805 105174805 C T INF2 Missense_Mutation p.P590S 0.42 tolerated(1) unknown(0) TCGA-W3-A828-06 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 14 105246552 105246552 C T AKT1 Silent p.G16G 0.39 TCGA-W3-A828-06 14 105409275 105409275 G A AHNAK2 Silent p.S4171S 0.23 TCGA-W3-A828-06 14 105413436 105413436 C T AHNAK2 Silent p.Q2784Q 0.51 TCGA-W3-A828-06 14 105419235 105419235 G A AHNAK2 Silent p.S851S 0.47 TCGA-W3-A828-06 14 105419236 105419236 G A AHNAK2 Missense_Mutation p.S851F 0.47 probably_damaging(0.987) TCGA-W3-A828-06 14 105932787 105932787 C T MTA1 Missense_Mutation p.P550L 0.33 deleterious(0.02) benign(0.075) TCGA-W3-A828-06 14 106471673 106471673 C T IGHV1-3 Nonsense_Mutation p.W3* 0.23 TCGA-W3-A828-06 14 106573532 106573532 G A IGHV3-11 Nonsense_Mutation p.Q18* 0.24 TCGA-W3-A828-06 14 106791222 106791222 C T IGHV3-30 Missense_Mutation p.G45E 0.14 deleterious_low_confidence(0.01) benign(0.165) TCGA-W3-A828-06 14 106926285 106926285 C T IGHV3-43 Missense_Mutation p.R86Q 0.24 deleterious_low_confidence(0.01) benign(0.17) TCGA-W3-A828-06 14 19571363 19571363 T G POTEG Missense_Mutation p.L381R 0.10 tolerated(0.06) benign(0.006) TCGA-W3-A828-06 14 19574324 19574324 C T POTEG Missense_Mutation p.P461S 0.16 tolerated(0.14) benign(0.035) TCGA-W3-A828-06 14 20692106 20692106 C T OR11H6 Missense_Mutation p.L80F 0.23 tolerated(0.2) benign(0.044) TCGA-W3-A828-06 14 22134146 22134146 C T OR4E2 Missense_Mutation p.P284S 0.11 deleterious(0) probably_damaging(0.947) TCGA-W3-A828-06 14 22928117 22928117 C T TRDJ3 Silent p.F10F 0.38 TCGA-W3-A828-06 14 23240320 23240320 C T OXA1L Missense_Mutation p.P405S 0.27 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 14 23855678 23855678 G A MYH6 Missense_Mutation p.S1602F 0.22 deleterious(0.02) possibly_damaging(0.892) TCGA-W3-A828-06 14 23855800 23855800 G A MYH6 Silent p.L1561L 0.23 TCGA-W3-A828-06 14 23876443 23876443 C T MYH6 Intron 0.40 TCGA-W3-A828-06 14 23876444 23876444 C T MYH6 Intron 0.40 TCGA-W3-A828-06 14 24113701 24113701 C T DHRS2 Silent p.I208I 0.31 TCGA-W3-A828-06 14 24544403 24544403 C T CPNE6 Missense_Mutation p.S232F 0.25 tolerated(0.06) benign(0.302) TCGA-W3-A828-06 14 24635142 24635142 C T IRF9 Missense_Mutation p.H360Y 0.24 tolerated(1) benign(0.015) TCGA-W3-A828-06 14 24650958 24650958 G A IPO4 Missense_Mutation p.R967C 0.16 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 14 24846073 24846074 - GCT NFATC4 In_Frame_Ins p.L941dup 0.33 TCGA-W3-A828-06 14 24883916 24883916 G A NYNRIN Silent p.P987P 0.34 TCGA-W3-A828-06 14 24897192 24897192 C T CBLN3 Missense_Mutation p.V141M 0.59 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 14 33684414 33684414 C T NPAS3 Missense_Mutation p.S56F 0.43 deleterious(0) possibly_damaging(0.485) TCGA-W3-A828-06 14 45564628 45564628 T C PRPF39 Silent p.S62S 0.49 TCGA-W3-A828-06 14 55169444 55169444 G A SAMD4A Intron 0.35 TCGA-W3-A828-06 14 55817349 55817349 A G FBXO34 Missense_Mutation p.S81G 0.55 tolerated(0.55) benign(0.004) TCGA-W3-A828-06 14 56763415 56763415 C T PELI2 Missense_Mutation p.P265L 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-W3-A828-06 14 57960308 57960308 C T C14orf105 Silent p.K42K 0.45 TCGA-W3-A828-06 14 58048152 58048152 C T SLC35F4 Splice_Site p.X232_splice 0.68 TCGA-W3-A828-06 14 59112194 59112194 C G DACT1 Missense_Mutation p.L285V 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-W3-A828-06 14 62550944 62550944 G A SYT16 Missense_Mutation p.V489I 0.55 tolerated(0.64) benign(0.003) TCGA-W3-A828-06 14 63416937 63416937 G A KCNH5 Missense_Mutation p.T428I 0.54 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 14 64152957 64152957 G A SGPP1 Missense_Mutation p.P398S 0.17 tolerated(0.17) possibly_damaging(0.601) TCGA-W3-A828-06 14 64635642 64635642 T A SYNE2 Nonsense_Mutation p.Y5651* 0.44 TCGA-W3-A828-06 14 67626187 67626187 G A GPHN Missense_Mutation p.R631K 0.24 deleterious(0) benign(0.038) TCGA-W3-A828-06 14 70478254 70478254 G T SMOC1 Missense_Mutation p.D304Y 0.13 deleterious(0.03) possibly_damaging(0.603) TCGA-W3-A828-06 14 71518601 71518601 T C PCNX Silent p.H1483H 0.52 TCGA-W3-A828-06 14 71543018 71543018 C T PCNX Missense_Mutation p.P1740L 0.48 deleterious(0.02) possibly_damaging(0.716) TCGA-W3-A828-06 14 72054512 72054512 C T SIPA1L1 5'UTR 0.27 TCGA-W3-A828-06 14 73491283 73491283 G A ZFYVE1 5'UTR 0.29 TCGA-W3-A828-06 14 74009816 74009816 G A ACOT1 Missense_Mutation p.M241I 0.39 tolerated(0.08) benign(0.035) TCGA-W3-A828-06 14 74444018 74444018 C T ENTPD5 Missense_Mutation p.M167I 0.34 deleterious(0.03) benign(0.163) TCGA-W3-A828-06 14 74754550 74754550 G A ABCD4 Silent p.S533S 0.32 TCGA-W3-A828-06 14 75420624 75420624 C T PGF Missense_Mutation p.G34D 0.15 tolerated(0.08) benign(0.016) TCGA-W3-A828-06 14 76967057 76967057 C T ESRRB Missense_Mutation p.T507I 0.57 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-W3-A828-06 14 78161215 78161215 G A ALKBH1 Silent p.L107L 0.19 TCGA-W3-A828-06 14 81743428 81743428 G A STON2 Missense_Mutation p.R743C 0.24 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 14 86089967 86089967 C T FLRT2 3'UTR 0.23 TCGA-W3-A828-06 14 90650640 90650640 G A KCNK13 Missense_Mutation p.E174K 0.23 tolerated(0.77) benign(0.001) TCGA-W3-A828-06 14 92105456 92105456 C T CATSPERB Missense_Mutation p.R524K 0.42 tolerated(1) benign(0.001) TCGA-W3-A828-06 14 92624149 92624149 T A CPSF2 Missense_Mutation p.F581Y 0.31 tolerated(1) benign(0.001) TCGA-W3-A828-06 14 92900307 92900307 G A SLC24A4 Missense_Mutation p.G98E 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 14 93179164 93179164 G A LGMN Missense_Mutation p.P199L 0.50 deleterious(0.03) possibly_damaging(0.698) TCGA-W3-A828-06 14 95560419 95560419 G A DICER1 Missense_Mutation p.P1724S 0.53 tolerated(0.44) possibly_damaging(0.72) TCGA-W3-A828-06 14 95669482 95669482 G A CLMN Missense_Mutation p.P735L 0.42 deleterious(0) probably_damaging(0.965) TCGA-W3-A828-06 14 95670166 95670166 G A CLMN Missense_Mutation p.S507F 0.49 tolerated_low_confidence(0.15) benign(0.004) TCGA-W3-A828-06 14 96800100 96800100 C T ATG2B Missense_Mutation p.D378N 0.44 deleterious(0.02) possibly_damaging(0.874) TCGA-W3-A828-06 14 96808039 96808039 C T ATG2B Splice_Site p.X249_splice 0.51 TCGA-W3-A828-06 15 20495447 20495447 G A CHEK2P2 Splice_Site 0.04 TCGA-W3-A828-06 15 22332689 22332689 C T RP11-69H14.6 RNA 0.08 TCGA-W3-A828-06 15 22368841 22368841 G A OR4M2 Missense_Mutation p.R89K 0.17 tolerated(0.8) benign(0.304) TCGA-W3-A828-06 15 22929743 22929743 A G CYFIP1 Silent p.E139E 0.38 TCGA-W3-A828-06 15 23812603 23812603 T G MKRN3 3'UTR 0.38 TCGA-W3-A828-06 15 23932285 23932285 C T NDN Missense_Mutation p.G27E 0.15 tolerated_low_confidence(0.32) benign(0.004) TCGA-W3-A828-06 15 24922954 24922954 C T NPAP1 Missense_Mutation p.P647L 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-W3-A828-06 15 24922955 24922955 C T NPAP1 Silent p.P647P 0.29 TCGA-W3-A828-06 15 25310255 25310255 C T SNORD116-6 RNA 0.40 TCGA-W3-A828-06 15 25321163 25321163 G A SNORD116-11 RNA 0.24 TCGA-W3-A828-06 15 25420133 25420133 T A SNORD115-3 RNA 0.30 TCGA-W3-A828-06 15 25434615 25434615 C T SNORD115-11 RNA 0.24 TCGA-W3-A828-06 15 25472080 25472080 G A SNORD115-33 5'Flank 0.36 TCGA-W3-A828-06 15 26866634 26866634 C T GABRB3 Silent p.R96R 0.28 TCGA-W3-A828-06 15 27772752 27772752 A G GABRG3 Missense_Mutation p.T347A 0.30 tolerated(0.85) benign(0.001) TCGA-W3-A828-06 15 28259967 28259967 G A OCA2 Silent p.I333I 0.30 TCGA-W3-A828-06 15 30665248 30665248 G A CHRFAM7A Silent p.S87S 0.17 TCGA-W3-A828-06 15 35234240 35234240 G A AQR Silent p.S171S 0.26 TCGA-W3-A828-06 15 35236606 35236606 G A AQR Silent p.H118H 0.48 TCGA-W3-A828-06 15 39880827 39880827 C A THBS1 Silent p.P524P 0.15 TCGA-W3-A828-06 15 40588967 40588967 G A PLCB2 Missense_Mutation p.A489V 0.37 tolerated(0.27) benign(0.001) TCGA-W3-A828-06 15 40913720 40913720 C T CASC5 Missense_Mutation p.P446S 0.24 tolerated(0.4) benign(0.015) TCGA-W3-A828-06 15 41105558 41105558 C T ZFYVE19 Silent p.L351L 0.30 TCGA-W3-A828-06 15 41222856 41222856 G C DLL4 Missense_Mutation p.A124P 0.45 deleterious(0.03) possibly_damaging(0.527) TCGA-W3-A828-06 15 41961772 41961772 C T MGA Missense_Mutation p.T227I 0.27 deleterious(0) probably_damaging(0.96) TCGA-W3-A828-06 15 42058980 42058980 C T MGA Silent p.L2900L 0.27 TCGA-W3-A828-06 15 42178215 42178215 G A SPTBN5 Missense_Mutation p.A413V 0.30 probably_damaging(0.999) TCGA-W3-A828-06 15 42652180 42652180 G A CAPN3 Silent p.K59K 0.39 TCGA-W3-A828-06 15 45409845 45409845 C T DUOXA1 Silent p.S440S 0.62 TCGA-W3-A828-06 15 45694578 45694578 C A SPATA5L1 5'UTR 0.29 TCGA-W3-A828-06 15 45778918 45778918 G A SLC30A4 Silent p.D342D 0.36 TCGA-W3-A828-06 15 48744795 48744795 G A FBN1 Missense_Mutation p.P1837S 0.31 benign(0.047) TCGA-W3-A828-06 15 49493392 49493392 G T GALK2 Missense_Mutation p.K29N 0.36 tolerated(0.11) probably_damaging(0.993) TCGA-W3-A828-06 15 50189681 50189681 C T ATP8B4 Silent p.Q835Q 0.24 TCGA-W3-A828-06 15 50557810 50557810 G A HDC Missense_Mutation p.P4L 0.24 tolerated(0.42) benign(0.003) TCGA-W3-A828-06 15 50557811 50557811 G A HDC Missense_Mutation p.P4S 0.27 tolerated(0.64) benign(0.005) TCGA-W3-A828-06 15 51783912 51783912 G A DMXL2 Missense_Mutation p.H1606Y 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-W3-A828-06 15 52503997 52503997 G A MYO5C Missense_Mutation p.S1409F 0.36 tolerated(0.09) benign(0.094) TCGA-W3-A828-06 15 52725457 52725457 G A MYO5A Missense_Mutation p.P18L 0.40 deleterious(0.01) benign(0.027) TCGA-W3-A828-06 15 52725458 52725458 G A MYO5A Missense_Mutation p.P18S 0.41 tolerated(0.19) benign(0.004) TCGA-W3-A828-06 15 53901785 53901785 C T WDR72 Silent p.K959K 0.22 TCGA-W3-A828-06 15 54307090 54307090 G A UNC13C Missense_Mutation p.A664T 0.26 tolerated_low_confidence(0.39) benign(0.003) TCGA-W3-A828-06 15 54792370 54792370 T G UNC13C Missense_Mutation p.D1718E 0.20 tolerated_low_confidence(0.08) benign(0.105) TCGA-W3-A828-06 15 55970187 55970187 C T PRTG Missense_Mutation p.A397T 0.30 deleterious(0) probably_damaging(0.96) TCGA-W3-A828-06 15 56386858 56386858 G A RFX7 Missense_Mutation p.P1023L 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-A828-06 15 60741186 60741186 G A NARG2 Silent p.S660S 0.26 TCGA-W3-A828-06 15 62939530 62939530 G A TLN2 Silent p.K7K 0.38 TCGA-W3-A828-06 15 63363447 63363447 C G TPM1 3'UTR 0.50 TCGA-W3-A828-06 15 63880650 63880650 C T USP3 Intron 0.31 TCGA-W3-A828-06 15 64966385 64966385 C T ZNF609 Silent p.P444P 0.35 TCGA-W3-A828-06 15 66416315 66416315 G C MEGF11 Missense_Mutation p.S41W 0.31 deleterious(0) probably_damaging(0.974) TCGA-W3-A828-06 15 66850340 66850340 G A LCTL Missense_Mutation p.T247M 0.32 deleterious(0.04) possibly_damaging(0.667) TCGA-W3-A828-06 15 69006921 69006921 C T CORO2B Silent p.I263I 0.40 TCGA-W3-A828-06 15 72030241 72030241 C T THSD4 Nonsense_Mutation p.R601* 0.24 TCGA-W3-A828-06 15 74166022 74166022 C A TBC1D21 5'UTR 0.44 TCGA-W3-A828-06 15 74174054 74174054 C T TBC1D21 Nonsense_Mutation p.Q80* 0.24 TCGA-W3-A828-06 15 75091065 75091065 C T CSK Missense_Mutation p.T42I 0.31 deleterious(0.04) probably_damaging(0.946) TCGA-W3-A828-06 15 75979938 75979938 G A CSPG4 Silent p.L1156L 0.39 TCGA-W3-A828-06 15 77407179 77407179 C T PEAK1 Silent p.E1520E 0.31 TCGA-W3-A828-06 15 77407602 77407602 C T PEAK1 Silent p.Q1379Q 0.37 TCGA-W3-A828-06 15 80886098 80886098 C T ARNT2 3'UTR 0.44 TCGA-W3-A828-06 15 83451588 83451588 T C FSD2 Missense_Mutation p.I309V 0.16 tolerated(0.5) benign(0.007) TCGA-W3-A828-06 15 87089299 87089299 G A AGBL1 Missense_Mutation p.E872K 0.52 deleterious(0) probably_damaging(0.942) TCGA-W3-A828-06 15 89400461 89400461 C T ACAN Missense_Mutation p.P1549S 0.44 tolerated(0.14) probably_damaging(0.98) TCGA-W3-A828-06 15 91769589 91769589 G A SV2B Silent p.Q32Q 0.43 TCGA-W3-A828-06 15 97328248 97328248 G A SPATA8 Silent p.R73R 0.29 TCGA-W3-A828-06 16 19718129 19718129 C T KNOP1 3'UTR 0.31 TCGA-W3-A828-06 16 20488691 20488691 G A ACSM2A Missense_Mutation p.G367R 0.25 tolerated(0.07) possibly_damaging(0.685) TCGA-W3-A828-06 16 20497934 20497934 G A ACSM2A Silent p.G556G 0.37 TCGA-W3-A828-06 16 20565147 20565147 G T ACSM2B Missense_Mutation p.A231E 0.32 deleterious(0) probably_damaging(0.989) TCGA-W3-A828-06 16 20873815 20873815 C T DCUN1D3 Missense_Mutation p.G16S 0.28 tolerated(0.07) benign(0.311) TCGA-W3-A828-06 16 20948103 20948103 C T DNAH3 Silent p.S3909S 0.26 TCGA-W3-A828-06 16 21136618 21136618 A G DNAH3 Missense_Mutation p.Y428H 0.21 tolerated(0.54) benign(0.004) TCGA-W3-A828-06 16 22120859 22120859 C T VWA3A Silent p.I180I 0.24 TCGA-W3-A828-06 16 22558364 22558364 C T RP11-368J21.3 RNA 0.25 TCGA-W3-A828-06 16 23707269 23707269 G A ERN2 Missense_Mutation p.S567F 0.18 tolerated(0.06) probably_damaging(0.969) TCGA-W3-A828-06 16 2578078 2578078 C T AMDHD2 Silent p.L216L 0.39 TCGA-W3-A828-06 16 2578245 2578245 C T AMDHD2 Silent p.H242H 0.28 TCGA-W3-A828-06 16 27456014 27456014 C T IL21R Missense_Mutation p.P220L 0.27 tolerated(0.11) possibly_damaging(0.681) TCGA-W3-A828-06 16 28112940 28112940 G A XPO6 Missense_Mutation p.H1039Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 16 28513397 28513397 C T IL27 Missense_Mutation p.G121E 0.31 tolerated(0.34) benign(0.017) TCGA-W3-A828-06 16 2871567 2871567 C T PRSS21 Silent p.F302F 0.21 TCGA-W3-A828-06 16 2871568 2871568 C T PRSS21 Missense_Mutation p.P303S 0.21 tolerated(0.21) unknown(0) TCGA-W3-A828-06 16 29883590 29883590 G A SEZ6L2 Missense_Mutation p.S874F 0.29 tolerated(0.06) benign(0.002) TCGA-W3-A828-06 16 29912689 29912689 C T ASPHD1 Missense_Mutation p.P133S 0.38 tolerated(0.53) benign(0) TCGA-W3-A828-06 16 30106710 30106710 G A YPEL3 Missense_Mutation p.P32S 0.19 tolerated_low_confidence(0.22) benign(0.002) TCGA-W3-A828-06 16 30748990 30748990 C T SRCAP Silent p.L2543L 0.40 TCGA-W3-A828-06 16 30748991 30748991 C T SRCAP Missense_Mutation p.P2544S 0.39 unknown(0) TCGA-W3-A828-06 16 31150509 31150509 G A PRSS36 Missense_Mutation p.P840S 0.39 tolerated_low_confidence(0.07) benign(0.099) TCGA-W3-A828-06 16 31422524 31422524 C T ITGAD Missense_Mutation p.P495L 0.34 tolerated(0.06) possibly_damaging(0.839) TCGA-W3-A828-06 16 31539806 31539806 G A AHSP Missense_Mutation p.E35K 0.45 deleterious(0.03) probably_damaging(0.932) TCGA-W3-A828-06 16 3304435 3304435 C T MEFV Silent p.G211G 0.26 TCGA-W3-A828-06 16 3614957 3614957 G A NLRC3 Silent p.A74A 0.20 TCGA-W3-A828-06 16 46761268 46761268 G A MYLK3 Silent p.F598F 0.47 TCGA-W3-A828-06 16 46943690 46943690 C T GPT2 Missense_Mutation p.S224F 0.29 deleterious(0.02) benign(0.027) TCGA-W3-A828-06 16 48139055 48139055 C T ABCC12 Missense_Mutation p.D890N 0.26 tolerated(0.83) benign(0.004) TCGA-W3-A828-06 16 48173090 48173090 A G ABCC12 Missense_Mutation p.I272T 0.36 deleterious(0.02) benign(0.033) TCGA-W3-A828-06 16 48292640 48292640 G A LONP2 Missense_Mutation p.D238N 0.38 tolerated(0.31) benign(0.01) TCGA-W3-A828-06 16 4829778 4829778 G A SEPT12 Missense_Mutation p.P246S 0.42 deleterious(0) probably_damaging(0.981) TCGA-W3-A828-06 16 50136309 50136309 C T HEATR3 Missense_Mutation p.S628F 0.32 tolerated(0.19) benign(0.332) TCGA-W3-A828-06 16 50745778 50745778 G A NOD2 Silent p.S652S 0.36 TCGA-W3-A828-06 16 56673200 56673200 C T MT1A Missense_Mutation p.S18F 0.24 tolerated(0.06) unknown(0) TCGA-W3-A828-06 16 56878503 56878503 G A NUP93 Missense_Mutation p.M814I 0.28 tolerated(0.22) benign(0.032) TCGA-W3-A828-06 16 57756649 57756649 G A CCDC135 Missense_Mutation p.G435E 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 16 57918139 57918139 G A CNGB1 Missense_Mutation p.P1229S 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-W3-A828-06 16 58031224 58031224 G A ZNF319 Missense_Mutation p.R316C 0.21 deleterious(0) probably_damaging(0.912) TCGA-W3-A828-06 16 58545394 58545394 G A NDRG4 Missense_Mutation p.D364N 0.46 deleterious(0.01) possibly_damaging(0.653) TCGA-W3-A828-06 16 66949973 66949973 C T CDH16 Missense_Mutation p.R140K 0.31 tolerated(0.86) benign(0.02) TCGA-W3-A828-06 16 67473000 67473000 T C ATP6V0D1 Silent p.T230T 0.27 TCGA-W3-A828-06 16 67839343 67839343 T C RANBP10 Missense_Mutation p.K112R 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-W3-A828-06 16 68024024 68024024 C T DPEP2 Missense_Mutation p.G307D 0.34 deleterious(0.04) probably_damaging(0.97) TCGA-W3-A828-06 16 69368724 69368724 G A RP11-343C2.12 Silent p.F17F 0.33 TCGA-W3-A828-06 16 70500828 70500828 A T FUK Missense_Mutation p.D152V 0.37 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 16 70694063 70694063 G A IL34 Silent p.R234R 0.37 TCGA-W3-A828-06 16 70972549 70972549 C T HYDIN Silent p.G2321G 0.31 TCGA-W3-A828-06 16 74725302 74725302 C T MLKL Missense_Mutation p.E199K 0.23 deleterious(0.03) benign(0.168) TCGA-W3-A828-06 16 74725303 74725303 C T MLKL Silent p.K198K 0.22 TCGA-W3-A828-06 16 75276771 75276771 C T BCAR1 Missense_Mutation p.G123D 0.22 tolerated(0.48) benign(0.15) TCGA-W3-A828-06 16 77227492 77227492 G A MON1B Missense_Mutation p.G98E 0.27 tolerated(1) probably_damaging(0.999) TCGA-W3-A828-06 16 77896642 77896642 C T VAT1L Intron 0.28 TCGA-W3-A828-06 16 78011586 78011586 C T VAT1L Silent p.I418I 0.23 TCGA-W3-A828-06 16 84224826 84224826 C T ADAD2 5'UTR 0.42 TCGA-W3-A828-06 16 85112676 85112676 C T KIAA0513 Intron 0.33 TCGA-W3-A828-06 16 88690375 88690375 C T ZC3H18 Silent p.S601S 0.24 TCGA-W3-A828-06 16 88951592 88951592 A G CBFA2T3 Missense_Mutation p.Y327H 0.31 tolerated(0.41) benign(0.009) TCGA-W3-A828-06 16 89347248 89347248 G A ANKRD11 Missense_Mutation p.P1901L 0.27 benign(0.305) TCGA-W3-A828-06 16 90001965 90001965 G A TUBB3 Missense_Mutation p.G369E 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-A828-06 16 9857920 9857920 C T GRIN2A Missense_Mutation p.G1161R 0.34 tolerated(0.5) possibly_damaging(0.555) TCGA-W3-A828-06 17 10346845 10346845 C T MYH4 Splice_Site p.X1890_splice 0.37 TCGA-W3-A828-06 17 10406533 10406533 C T MYH1 Silent p.R908R 0.28 TCGA-W3-A828-06 17 10429022 10429022 C T MYH2 Silent p.R1453R 0.33 TCGA-W3-A828-06 17 10438458 10438458 C A MYH2 Silent p.V704V 0.34 TCGA-W3-A828-06 17 10440548 10440548 A G MYH2 Splice_Site p.X633_splice 0.36 TCGA-W3-A828-06 17 10443330 10443330 C A MYH2 Missense_Mutation p.K354N 0.33 deleterious(0) benign(0.113) TCGA-W3-A828-06 17 14005483 14005483 C T COX10 Missense_Mutation p.P183L 0.35 deleterious(0) probably_damaging(0.93) TCGA-W3-A828-06 17 15341174 15341174 G A CDRT4 Silent p.S124S 0.36 TCGA-W3-A828-06 17 1538817 1538817 G A SCARF1 Silent p.I576I 0.29 TCGA-W3-A828-06 17 15534974 15534974 G A RP11-385D13.1 Missense_Mutation p.T357I 0.28 tolerated_low_confidence(0.37) benign(0.022) TCGA-W3-A828-06 17 16075284 16075284 C T NCOR1 Missense_Mutation p.E90K 0.47 benign(0.126) TCGA-W3-A828-06 17 16323562 16323562 G A TRPV2 Missense_Mutation p.E112K 0.42 deleterious(0.02) benign(0.303) TCGA-W3-A828-06 17 16340144 16340144 G A TRPV2 Missense_Mutation p.D746N 0.38 tolerated(0.31) benign(0.035) TCGA-W3-A828-06 17 18770629 18770629 T C PRPSAP2 Missense_Mutation p.Y52H 0.18 tolerated(0.12) benign(0.033) TCGA-W3-A828-06 17 19641495 19641495 G A ALDH3A1 3'UTR 0.12 TCGA-W3-A828-06 17 26604244 26604244 C T AC061975.8 5'Flank 0.35 TCGA-W3-A828-06 17 27086604 27086604 G A FAM222B Missense_Mutation p.P125S 0.37 tolerated(0.12) benign(0.162) TCGA-W3-A828-06 17 27425389 27425389 G A MYO18A Silent p.D1285D 0.24 TCGA-W3-A828-06 17 27434132 27434132 T G MYO18A Missense_Mutation p.H1136P 0.37 tolerated(0.17) probably_damaging(0.968) TCGA-W3-A828-06 17 27898609 27898609 G A TP53I13 Missense_Mutation p.A62T 0.42 tolerated_low_confidence(0.07) benign(0.407) TCGA-W3-A828-06 17 29585361 29585361 G A NF1 Splice_Site p.X1392_splice 0.23 TCGA-W3-A828-06 17 29664421 29664421 G - NF1 Frame_Shift_Del p.E2155Sfs*45 0.18 TCGA-W3-A828-06 17 3144155 3144155 C T OR1D4 RNA 0.30 TCGA-W3-A828-06 17 32612710 32612710 C T CCL11 5'UTR 0.38 TCGA-W3-A828-06 17 32957065 32957065 G A TMEM132E Silent p.R369R 0.38 TCGA-W3-A828-06 17 33900761 33900761 C T PEX12 3'Flank 0.26 TCGA-W3-A828-06 17 3477091 3477091 C T SHPK Missense_Mutation p.D647N 0.29 deleterious(0.04) possibly_damaging(0.887) TCGA-W3-A828-06 17 35615234 35615234 G A ACACA Missense_Mutation p.P521L 0.24 deleterious(0) benign(0.329) TCGA-W3-A828-06 17 3592895 3592895 G A P2RX5 Missense_Mutation p.S215F 0.31 deleterious(0.03) benign(0.039) TCGA-W3-A828-06 17 36705383 36705383 G A SRCIN1 Missense_Mutation p.P1009L 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 17 37187237 37187237 G A CTD-2206N4.2 5'Flank 0.41 TCGA-W3-A828-06 17 3788667 3788667 C T CAMKK1 Silent p.R105R 0.40 TCGA-W3-A828-06 17 38636990 38636990 G T TNS4 Missense_Mutation p.S568Y 0.35 tolerated(0.29) possibly_damaging(0.45) TCGA-W3-A828-06 17 38787106 38787106 G A SMARCE1 Missense_Mutation p.A296V 0.28 tolerated(0.26) benign(0.215) TCGA-W3-A828-06 17 39190603 39190603 G A KRTAP1-3 Silent p.V157V 0.23 TCGA-W3-A828-06 17 39739673 39739673 T G KRT14 Missense_Mutation p.K363T 0.32 deleterious(0) possibly_damaging(0.735) TCGA-W3-A828-06 17 39871809 39871809 G A GAST Missense_Mutation p.D41N 0.34 tolerated_low_confidence(0.08) benign(0) TCGA-W3-A828-06 17 39914684 39914684 G A JUP Silent p.I580I 0.29 TCGA-W3-A828-06 17 40009951 40009951 G A KLHL11 3'UTR 0.33 TCGA-W3-A828-06 17 40344935 40344935 C T GHDC Missense_Mutation p.A126T 0.35 tolerated(0.55) benign(0.004) TCGA-W3-A828-06 17 40720907 40720907 C T MLX Silent p.D128D 0.18 TCGA-W3-A828-06 17 40733933 40733933 G A FAM134C Silent p.S433S 0.40 TCGA-W3-A828-06 17 40733934 40733934 G A FAM134C Missense_Mutation p.S433F 0.38 tolerated(0.13) benign(0.043) TCGA-W3-A828-06 17 40838068 40838068 G A CNTNAP1 Missense_Mutation p.R270Q 0.35 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 17 42294070 42294070 G A UBTF Missense_Mutation p.R21C 0.36 tolerated(0.05) possibly_damaging(0.513) TCGA-W3-A828-06 17 42400688 42400688 C T SLC25A39 Missense_Mutation p.V37I 0.47 tolerated(1) benign(0.038) TCGA-W3-A828-06 17 42400689 42400689 C T SLC25A39 Silent p.K36K 0.47 TCGA-W3-A828-06 17 42849004 42849004 C T ADAM11 Missense_Mutation p.S145F 0.38 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 17 44101545 44101545 C T MAPT 3'UTR 0.39 TCGA-W3-A828-06 17 45299106 45299106 C T MYL4 Silent p.S124S 0.27 TCGA-W3-A828-06 17 4535040 4535040 G A ALOX15 Missense_Mutation p.S615L 0.27 deleterious(0.03) possibly_damaging(0.853) TCGA-W3-A828-06 17 45368505 45368505 A G ITGB3 Intron 0.28 TCGA-W3-A828-06 17 45916976 45916976 C T SCRN2 Silent p.E130E 0.20 TCGA-W3-A828-06 17 4647085 4647085 G A ZMYND15 Missense_Mutation p.G441R 0.33 tolerated(0.32) probably_damaging(0.921) TCGA-W3-A828-06 17 4647086 4647086 G A ZMYND15 Missense_Mutation p.G441E 0.34 tolerated(0.66) benign(0.335) TCGA-W3-A828-06 17 48267698 48267698 G A COL1A1 Missense_Mutation p.A814V 0.24 unknown(0) TCGA-W3-A828-06 17 48626709 48626709 C T SPATA20 Silent p.A241A 0.24 TCGA-W3-A828-06 17 48678411 48678411 G A CACNA1G Splice_Site p.X1264_splice 0.39 TCGA-W3-A828-06 17 48917262 48917262 C T WFIKKN2 Silent p.L205L 0.34 TCGA-W3-A828-06 17 49059915 49059915 A G SPAG9 Silent p.Y1069Y 0.34 TCGA-W3-A828-06 17 53046041 53046041 G A COX11 5'UTR 0.25 TCGA-W3-A828-06 17 53237280 53237280 C T STXBP4 3'UTR 0.38 TCGA-W3-A828-06 17 5359445 5359445 C T DHX33 Missense_Mutation p.A303T 0.29 tolerated(0.16) benign(0.376) TCGA-W3-A828-06 17 54940141 54940141 G A DGKE Missense_Mutation p.A565T 0.20 tolerated_low_confidence(0.09) benign(0.003) TCGA-W3-A828-06 17 56357809 56357809 C T MPO Missense_Mutation p.E56K 0.38 tolerated(0.67) benign(0.003) TCGA-W3-A828-06 17 58235453 58235453 C T CA4 Missense_Mutation p.P182L 0.34 deleterious(0.05) possibly_damaging(0.536) TCGA-W3-A828-06 17 58740565 58740565 G A PPM1D Silent p.L490L 0.39 TCGA-W3-A828-06 17 59067440 59067440 C T BCAS3 Missense_Mutation p.R444C 0.29 deleterious(0) probably_damaging(0.912) TCGA-W3-A828-06 17 613815 613815 G A VPS53 Silent p.F42F 0.35 TCGA-W3-A828-06 17 61571282 61571282 G A ACE Splice_Site p.X1046_splice 0.38 TCGA-W3-A828-06 17 61995441 61995441 G A GH1 Missense_Mutation p.T76I 0.35 deleterious(0.01) possibly_damaging(0.773) TCGA-W3-A828-06 17 62499201 62499201 G A DDX5 Silent p.L276L 0.33 TCGA-W3-A828-06 17 644794 644794 C T FAM57A Missense_Mutation p.A253V 0.25 tolerated(0.06) benign(0.013) TCGA-W3-A828-06 17 6589374 6589374 G A SLC13A5 3'UTR 0.33 TCGA-W3-A828-06 17 65908736 65908736 C T BPTF Missense_Mutation p.S1579F 0.39 benign(0.271) TCGA-W3-A828-06 17 70643700 70643700 C T SLC39A11 3'UTR 0.22 TCGA-W3-A828-06 17 7330484 7330484 C T C17orf74 Silent p.L392L 0.32 TCGA-W3-A828-06 17 73780812 73780812 G A UNK 5'Flank 0.14 TCGA-W3-A828-06 17 7401461 7401461 A T POLR2A Missense_Mutation p.N423Y 0.41 probably_damaging(0.98) TCGA-W3-A828-06 17 7416194 7416194 G A POLR2A Missense_Mutation p.G1570S 0.28 benign(0.004) TCGA-W3-A828-06 17 74271979 74271979 G C QRICH2 Missense_Mutation p.H1635Q 0.31 tolerated(0.1) benign(0.161) TCGA-W3-A828-06 17 75398318 75398318 C T SEPT9 Missense_Mutation p.S85F 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-W3-A828-06 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.65 TCGA-W3-A828-06 17 76115098 76115098 G A TMC6 Missense_Mutation p.P614L 0.23 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 17 76395475 76395475 C T PGS1 Silent p.F186F 0.27 TCGA-W3-A828-06 17 76395476 76395476 C T PGS1 Missense_Mutation p.P187S 0.27 tolerated(0.37) benign(0.03) TCGA-W3-A828-06 17 76968114 76968114 G A LGALS3BP Silent p.S434S 0.36 TCGA-W3-A828-06 17 76968115 76968115 G A LGALS3BP Missense_Mutation p.S434F 0.36 tolerated(0.12) benign(0.009) TCGA-W3-A828-06 17 7751582 7751582 G A KDM6B Missense_Mutation p.G659E 0.40 unknown(0) TCGA-W3-A828-06 17 77709345 77709345 G A ENPP7 Silent p.K301K 0.33 TCGA-W3-A828-06 17 77709346 77709346 G A ENPP7 Missense_Mutation p.D302N 0.33 tolerated(1) benign(0.044) TCGA-W3-A828-06 17 78897336 78897336 G A RPTOR Missense_Mutation p.D891N 0.33 tolerated(0.42) benign(0.133) TCGA-W3-A828-06 17 80194708 80194708 G A SLC16A3 Silent p.R109R 0.38 TCGA-W3-A828-06 17 8051998 8051998 G A PER1 Silent p.L338L 0.32 TCGA-W3-A828-06 17 80521410 80521410 C T FOXK2 Silent p.P200P 0.40 TCGA-W3-A828-06 17 8784038 8784038 G A PIK3R5 Missense_Mutation p.P854L 0.35 tolerated(0.06) benign(0.002) TCGA-W3-A828-06 17 8814785 8814785 C T PIK3R5 Silent p.T9T 0.22 TCGA-W3-A828-06 17 9764490 9764490 C T GLP2R Silent p.F320F 0.34 TCGA-W3-A828-06 17 9862612 9862612 C T GAS7 Intron 0.43 TCGA-W3-A828-06 18 13741634 13741634 G A RNMT Silent p.E306E 0.23 TCGA-W3-A828-06 18 14184075 14184075 G A ANKRD20A5P RNA 0.28 TCGA-W3-A828-06 18 14533117 14533117 G A POTEC Missense_Mutation p.S333F 0.31 tolerated(0.37) probably_damaging(0.99) TCGA-W3-A828-06 18 18533573 18533573 G A ROCK1 Missense_Mutation p.R1343W 0.34 deleterious(0) probably_damaging(0.968) TCGA-W3-A828-06 18 18533574 18533574 G A ROCK1 Silent p.F1342F 0.34 TCGA-W3-A828-06 18 21883620 21883620 C T OSBPL1A Silent p.K385K 0.27 TCGA-W3-A828-06 18 28598089 28598089 A G DSC3 Missense_Mutation p.F404S 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 18 29126660 29126660 C T DSG2 Missense_Mutation p.S1104F 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 18 29790499 29790499 G A MEP1B Missense_Mutation p.V319I 0.31 tolerated(0.11) benign(0.019) TCGA-W3-A828-06 18 29867400 29867400 G A GAREM Missense_Mutation p.S387L 0.27 deleterious(0) probably_damaging(0.987) TCGA-W3-A828-06 18 31326140 31326140 G A ASXL3 Missense_Mutation p.E2110K 0.28 probably_damaging(0.996) TCGA-W3-A828-06 18 33555046 33555046 C T C18orf21 Silent p.S96S 0.22 TCGA-W3-A828-06 18 346626 346626 C T COLEC12 Silent p.L332L 0.42 TCGA-W3-A828-06 18 40850441 40850441 C T SYT4 Silent p.R381R 0.24 TCGA-W3-A828-06 18 42531847 42531847 C T SETBP1 Silent p.L848L 0.40 TCGA-W3-A828-06 18 43223108 43223108 G A SLC14A2 Missense_Mutation p.A380T 0.38 deleterious(0.04) possibly_damaging(0.607) TCGA-W3-A828-06 18 43796179 43796179 C T C18orf25 Silent p.S111S 0.32 TCGA-W3-A828-06 18 44013261 44013261 C T RNF165 Missense_Mutation p.P57L 0.30 tolerated(0.05) benign(0.122) TCGA-W3-A828-06 18 45556194 45556194 A G ZBTB7C Missense_Mutation p.Y433H 0.46 deleterious(0) benign(0.311) TCGA-W3-A828-06 18 47518794 47518794 C T MYO5B Missense_Mutation p.G207E 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 18 50734053 50734053 T A DCC Missense_Mutation p.I576K 0.36 deleterious(0) benign(0.438) TCGA-W3-A828-06 18 51863534 51863534 T C STARD6 Silent p.K76K 0.33 TCGA-W3-A828-06 18 56620855 56620855 G T ZNF532 Nonsense_Mutation p.E992* 0.40 TCGA-W3-A828-06 18 63525066 63525066 G A CDH7 Missense_Mutation p.R417K 0.32 tolerated(0.06) possibly_damaging(0.498) TCGA-W3-A828-06 18 63525181 63525181 G A CDH7 Missense_Mutation p.M455I 0.40 tolerated(0.09) benign(0.013) TCGA-W3-A828-06 18 67871361 67871361 G T RTTN Missense_Mutation p.P120T 0.35 deleterious(0.02) possibly_damaging(0.456) TCGA-W3-A828-06 18 72346469 72346469 G T ZNF407 Missense_Mutation p.C1165F 0.39 deleterious(0.02) benign(0.277) TCGA-W3-A828-06 18 7906583 7906583 T G PTPRM Splice_Site p.X183_splice 0.29 TCGA-W3-A828-06 19 10085020 10085020 C T COL5A3 Missense_Mutation p.G1136E 0.38 probably_damaging(1) TCGA-W3-A828-06 19 10398043 10398043 G A ICAM4 Missense_Mutation p.G119R 0.44 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-W3-A828-06 19 11446341 11446341 C A RAB3D Missense_Mutation p.W116L 0.39 deleterious(0) probably_damaging(0.994) TCGA-W3-A828-06 19 11446342 11446342 A G RAB3D Missense_Mutation p.W116R 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 19 11470612 11470612 G A DKFZP761J1410 Missense_Mutation p.R99Q 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 19 11762616 11762616 C T ZNF833P RNA 0.31 TCGA-W3-A828-06 19 11892035 11892035 G A ZNF441 Missense_Mutation p.E466K 0.32 tolerated(0.25) probably_damaging(0.973) TCGA-W3-A828-06 19 12089800 12089800 C T ZNF763 Missense_Mutation p.S357F 0.36 deleterious(0.04) probably_damaging(0.919) TCGA-W3-A828-06 19 1278944 1278944 C T C19orf24 3'UTR 0.23 TCGA-W3-A828-06 19 14157065 14157065 C T IL27RA Missense_Mutation p.P290S 0.34 deleterious(0.04) probably_damaging(1) TCGA-W3-A828-06 19 14499611 14499611 C T CD97 Silent p.T57T 0.28 TCGA-W3-A828-06 19 14752392 14752392 C T EMR3 Missense_Mutation p.G363R 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 19 15770110 15770110 C T CYP4F3 Missense_Mutation p.P493L 0.23 tolerated(0.11) benign(0.077) TCGA-W3-A828-06 19 15852787 15852787 A C OR10H3 Silent p.S195S 0.36 TCGA-W3-A828-06 19 16008280 16008280 G A CYP4F2 Missense_Mutation p.L48F 0.31 tolerated(0.07) benign(0.105) TCGA-W3-A828-06 19 17652972 17652972 G A FAM129C Missense_Mutation p.D431N 0.33 deleterious(0.03) probably_damaging(1) TCGA-W3-A828-06 19 17877604 17877604 C T FCHO1 Silent p.L107L 0.33 TCGA-W3-A828-06 19 18377767 18377767 G A KIAA1683 Missense_Mutation p.P195S 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-W3-A828-06 19 18377768 18377768 G A KIAA1683 Silent p.F194F 0.31 TCGA-W3-A828-06 19 18453666 18453666 C T PGPEP1 Intron 0.33 TCGA-W3-A828-06 19 18561752 18561752 G A ELL Silent p.L334L 0.25 TCGA-W3-A828-06 19 18561753 18561753 G A ELL Silent p.P333P 0.28 TCGA-W3-A828-06 19 19748804 19748804 G A GMIP Silent p.D284D 0.35 TCGA-W3-A828-06 19 20003534 20003534 C T ZNF253 Missense_Mutation p.P493L 0.26 tolerated_low_confidence(0.06) benign(0.145) TCGA-W3-A828-06 19 21587958 21587958 A T ZNF493 Missense_Mutation p.I20L 0.26 deleterious(0.01) benign(0.149) TCGA-W3-A828-06 19 22156665 22156665 G A ZNF208 Missense_Mutation p.H391Y 0.24 deleterious(0) probably_damaging(0.983) TCGA-W3-A828-06 19 2877808 2877808 G A ZNF556 Silent p.G284G 0.36 TCGA-W3-A828-06 19 3179502 3179502 C T S1PR4 Missense_Mutation p.P238S 0.34 tolerated(0.88) benign(0.011) TCGA-W3-A828-06 19 3179503 3179503 C T S1PR4 Missense_Mutation p.P238L 0.34 tolerated(0.39) benign(0.006) TCGA-W3-A828-06 19 33075880 33075880 C T PDCD5 Silent p.I43I 0.30 TCGA-W3-A828-06 19 3532489 3532489 C T FZR1 Silent p.I361I 0.28 TCGA-W3-A828-06 19 3600609 3600609 C T TBXA2R Silent p.L8L 0.19 TCGA-W3-A828-06 19 36142208 36142209 CC T COX6B1 Frame_Shift_Del p.N23Tfs*22 0.28 TCGA-W3-A828-06 19 36207757 36207757 C T ZBTB32 3'UTR 0.33 TCGA-W3-A828-06 19 36333449 36333449 C T NPHS1 Missense_Mutation p.E780K 0.27 deleterious(0.01) benign(0.203) TCGA-W3-A828-06 19 36900719 36900719 C T ZFP82 5'UTR 0.46 TCGA-W3-A828-06 19 37643290 37643290 G A ZNF585A Missense_Mutation p.T449I 0.27 tolerated(0.26) probably_damaging(1) TCGA-W3-A828-06 19 38946101 38946101 C T RYR1 Silent p.I529I 0.32 TCGA-W3-A828-06 19 39788884 39788884 C T IFNL1 Missense_Mutation p.P142L 0.29 tolerated(0.07) benign(0.015) TCGA-W3-A828-06 19 39998572 39998572 C T DLL3 Silent p.F592F 0.30 TCGA-W3-A828-06 19 40357475 40357475 C T FCGBP Missense_Mutation p.E5280K 0.49 benign(0.058) TCGA-W3-A828-06 19 41351205 41351205 G A CYP2A6 Silent p.L385L 0.38 TCGA-W3-A828-06 19 41630692 41630692 G A CYP2F1 Missense_Mutation p.A345T 0.67 tolerated(0.06) benign(0.008) TCGA-W3-A828-06 19 42093010 42093010 G A CEACAM21 3'Flank 0.64 TCGA-W3-A828-06 19 42133321 42133321 G A CEACAM4 Missense_Mutation p.P4L 0.38 tolerated(0.06) benign(0.41) TCGA-W3-A828-06 19 42213598 42213598 G A CEA Splice_Site p.X22_splice 0.30 TCGA-W3-A828-06 19 42848201 42848201 C T MEGF8 Silent p.P588P 0.36 TCGA-W3-A828-06 19 43025636 43025636 G A CEACAM1 Silent p.T247T 0.31 TCGA-W3-A828-06 19 43026232 43026232 G A CEACAM1 Nonsense_Mutation p.Q183* 0.33 TCGA-W3-A828-06 19 43257451 43257451 G A PSG8 3'Flank 0.24 TCGA-W3-A828-06 19 44012032 44012032 C T ETHE1 Intron 0.31 TCGA-W3-A828-06 19 44501382 44501382 G T ZNF155 Missense_Mutation p.C469F 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 19 44570275 44570275 G T ZNF223 Missense_Mutation p.W98C 0.24 deleterious(0.01) benign(0.006) TCGA-W3-A828-06 19 44792064 44792064 G A ZNF235 Silent p.V508V 0.34 TCGA-W3-A828-06 19 46812445 46812445 C T HIF3A Missense_Mutation p.P200L 0.26 tolerated(0.09) benign(0.081) TCGA-W3-A828-06 19 46832646 46832646 C T HIF3A Silent p.P541P 0.31 TCGA-W3-A828-06 19 47219505 47219505 C T PRKD2 Silent p.P41P 0.39 TCGA-W3-A828-06 19 47424844 47424844 C T ARHGAP35 Missense_Mutation p.P971L 0.29 deleterious(0) possibly_damaging(0.856) TCGA-W3-A828-06 19 48537599 48537599 C T CABP5 Silent p.G123G 0.23 TCGA-W3-A828-06 19 49303321 49303321 G A BCAT2 Missense_Mutation p.R150W 0.35 deleterious(0) possibly_damaging(0.898) TCGA-W3-A828-06 19 49303322 49303322 G A BCAT2 Silent p.R149R 0.34 TCGA-W3-A828-06 19 49387077 49387077 C T TULP2 Silent p.R403R 0.36 TCGA-W3-A828-06 19 49714874 49714874 C T TRPM4 3'UTR 0.30 TCGA-W3-A828-06 19 49999639 49999639 C T RPS11 5'UTR 0.29 TCGA-W3-A828-06 19 50172182 50172182 C T BCL2L12 Missense_Mutation p.P193S 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-W3-A828-06 19 51165529 51165529 C T SHANK1 Missense_Mutation p.G2060E 0.32 unknown(0) TCGA-W3-A828-06 19 51628972 51628972 G A SIGLEC9 Nonsense_Mutation p.W180* 0.43 TCGA-W3-A828-06 19 51630448 51630448 G A SIGLEC9 Missense_Mutation p.V304M 0.33 deleterious(0.03) possibly_damaging(0.644) TCGA-W3-A828-06 19 51670953 51670953 C A CTD-3187F8.14 Intron 0.48 TCGA-W3-A828-06 19 51768875 51768875 C A SIGLECL1 Silent p.T92T 0.28 TCGA-W3-A828-06 19 51914395 51914395 G A SIGLEC10 Silent p.P684P 0.30 TCGA-W3-A828-06 19 51983658 51983658 G A CEACAM18 Missense_Mutation p.G103R 0.29 tolerated(0.14) benign(0.092) TCGA-W3-A828-06 19 52076475 52076475 C T ZNF175 5'UTR 0.36 TCGA-W3-A828-06 19 5210784 5210784 G A PTPRS Missense_Mutation p.P1756L 0.23 deleterious(0) probably_damaging(0.992) TCGA-W3-A828-06 19 52569534 52569534 A G ZNF841 Missense_Mutation p.I534T 0.33 deleterious(0.04) probably_damaging(0.983) TCGA-W3-A828-06 19 53005156 53005156 C T ZNF578 Missense_Mutation p.P20S 0.33 tolerated(0.9) probably_damaging(0.986) TCGA-W3-A828-06 19 53572906 53572906 A T ZNF160 Missense_Mutation p.F294Y 0.31 deleterious(0.04) probably_damaging(0.914) TCGA-W3-A828-06 19 53741523 53741523 C T ZNF677 Missense_Mutation p.D153N 0.31 tolerated(0.53) benign(0.001) TCGA-W3-A828-06 19 53762045 53762045 C T VN1R2 Silent p.I139I 0.29 TCGA-W3-A828-06 19 53793344 53793344 G A BIRC8 Missense_Mutation p.T95I 0.22 tolerated(0.38) benign(0.002) TCGA-W3-A828-06 19 53889608 53889608 G A ZNF525 3'Flank 0.41 TCGA-W3-A828-06 19 54403508 54403508 G A PRKCG Missense_Mutation p.E435K 0.27 deleterious(0.04) probably_damaging(0.984) TCGA-W3-A828-06 19 54445394 54445394 C T CACNG7 Silent p.S225S 0.37 TCGA-W3-A828-06 19 54544120 54544120 G A VSTM1 3'UTR 0.31 TCGA-W3-A828-06 19 54544262 54544262 T G VSTM1 Missense_Mutation p.T222P 0.20 deleterious(0.01) possibly_damaging(0.831) TCGA-W3-A828-06 19 54544263 54544263 G T VSTM1 Silent p.T221T 0.21 TCGA-W3-A828-06 19 54759173 54759173 C T LILRB5 Missense_Mutation p.D310N 0.34 deleterious(0) possibly_damaging(0.763) TCGA-W3-A828-06 19 55049197 55049197 T G KIR3DX1 Missense_Mutation p.V321G 0.29 deleterious_low_confidence(0) benign(0.446) TCGA-W3-A828-06 19 55106838 55106838 C T LILRA1 Missense_Mutation p.P211L 0.26 deleterious(0.03) possibly_damaging(0.785) TCGA-W3-A828-06 19 55142724 55142724 C T LILRB1 Silent p.L13L 0.23 TCGA-W3-A828-06 19 55147031 55147031 C T LILRB1 Missense_Mutation p.P542S 0.28 tolerated(0.13) benign(0.036) TCGA-W3-A828-06 19 55253529 55253529 C T KIR2DL3 Silent p.F58F 0.31 TCGA-W3-A828-06 19 55367284 55367284 G A KIR3DL2 Missense_Mutation p.G289E 0.29 deleterious(0.03) benign(0.211) TCGA-W3-A828-06 19 55378051 55378051 C T KIR3DL2 Silent p.I411I 0.30 TCGA-W3-A828-06 19 55423546 55423546 G A NCR1 Nonsense_Mutation p.W231* 0.30 TCGA-W3-A828-06 19 55854207 55854207 C T SUV420H2 Missense_Mutation p.S125F 0.42 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 19 56243688 56243688 G A NLRP9 Silent p.I503I 0.30 TCGA-W3-A828-06 19 56312966 56312966 C T NLRP11 Missense_Mutation p.E715K 0.33 tolerated(0.68) benign(0.001) TCGA-W3-A828-06 19 56329293 56329293 C T NLRP11 Missense_Mutation p.R83K 0.27 tolerated(0.27) benign(0.003) TCGA-W3-A828-06 19 56539312 56539312 C T NLRP5 Silent p.L571L 0.40 TCGA-W3-A828-06 19 57029932 57029932 G A ZNF471 Missense_Mutation p.R81K 0.15 tolerated(0.2) benign(0.002) TCGA-W3-A828-06 19 5748203 5748203 G A CATSPERD Missense_Mutation p.G281R 0.25 tolerated(0.16) possibly_damaging(0.589) TCGA-W3-A828-06 19 5748204 5748204 G A CATSPERD Missense_Mutation p.G281E 0.28 tolerated(0.13) probably_damaging(0.988) TCGA-W3-A828-06 19 57640189 57640189 G A USP29 Missense_Mutation p.R49K 0.35 tolerated(0.74) benign(0.006) TCGA-W3-A828-06 19 57646914 57646914 G A ZIM3 Missense_Mutation p.S264L 0.31 deleterious(0) probably_damaging(0.981) TCGA-W3-A828-06 19 57956177 57956177 G A ZNF749 Missense_Mutation p.R554K 0.26 tolerated(0.35) possibly_damaging(0.694) TCGA-W3-A828-06 19 58004336 58004336 A - ZNF419 Frame_Shift_Del p.R140Dfs*9 0.26 TCGA-W3-A828-06 19 58005549 58005549 C T ZNF419 3'UTR 0.47 TCGA-W3-A828-06 19 58232803 58232803 C T ZNF671 Silent p.G217G 0.28 TCGA-W3-A828-06 19 58385091 58385091 G A ZNF814 Missense_Mutation p.S556F 0.33 tolerated(0.05) probably_damaging(0.963) TCGA-W3-A828-06 19 58420902 58420902 G A ZNF417 Silent p.S248S 0.39 TCGA-W3-A828-06 19 5867013 5867013 G A FUT5 Silent p.L242L 0.30 TCGA-W3-A828-06 19 58772733 58772733 G A ZNF544 Missense_Mutation p.G254D 0.29 tolerated(0.25) benign(0.013) TCGA-W3-A828-06 19 58967697 58967697 C T ZNF324B Silent p.F462F 0.28 TCGA-W3-A828-06 19 6480028 6480028 C T DENND1C Missense_Mutation p.E18K 0.27 tolerated(0.12) possibly_damaging(0.723) TCGA-W3-A828-06 19 6836549 6836549 G A VAV1 Silent p.T628T 0.15 TCGA-W3-A828-06 19 6837046 6837046 G A VAV1 Silent p.V655V 0.39 TCGA-W3-A828-06 19 830809 830809 G A AZU1 Nonsense_Mutation p.W154* 0.28 TCGA-W3-A828-06 19 830810 830810 G A AZU1 Missense_Mutation p.G155R 0.28 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 19 8662126 8662126 C T ADAMTS10 Missense_Mutation p.E296K 0.38 tolerated(0.08) possibly_damaging(0.715) TCGA-W3-A828-06 19 8808646 8808646 C T ACTL9 Missense_Mutation p.D136N 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-W3-A828-06 19 8982241 8982241 C A MUC16 Missense_Mutation p.V14012L 0.33 benign(0.241) TCGA-W3-A828-06 19 9059653 9059653 C T MUC16 Missense_Mutation p.V9265I 0.29 unknown(0) TCGA-W3-A828-06 19 9062278 9062278 C T MUC16 Missense_Mutation p.E8390K 0.29 unknown(0) TCGA-W3-A828-06 19 9062742 9062742 C A MUC16 Missense_Mutation p.R8235I 0.23 unknown(0) TCGA-W3-A828-06 19 9063550 9063550 C T MUC16 Missense_Mutation p.E7966K 0.35 unknown(0) TCGA-W3-A828-06 19 9066407 9066407 C T MUC16 Missense_Mutation p.M7013I 0.28 unknown(0) TCGA-W3-A828-06 19 9077387 9077387 C T MUC16 Silent p.G3353G 0.25 TCGA-W3-A828-06 19 9090533 9090533 C T MUC16 Missense_Mutation p.E428K 0.29 unknown(0) TCGA-W3-A828-06 19 9091108 9091108 G A MUC16 Missense_Mutation p.S236F 0.28 unknown(0) TCGA-W3-A828-06 19 9204508 9204508 G A OR1M1 Silent p.R196R 0.34 TCGA-W3-A828-06 19 9407011 9407011 G A ZNF699 Missense_Mutation p.H357Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-W3-A828-06 19 9524029 9524029 C T ZNF266 Silent p.E524E 0.27 TCGA-W3-A828-06 19 9965313 9965313 G A OLFM2 Missense_Mutation p.P305L 0.27 deleterious(0.03) benign(0.028) TCGA-W3-A828-06 1 100950018 100950018 C T CDC14A Intron 0.44 TCGA-W3-A828-06 1 102270107 102270107 T C OLFM3 Missense_Mutation p.N355S 0.44 deleterious(0.01) benign(0.138) TCGA-W3-A828-06 1 103385919 103385919 C T COL11A1 Missense_Mutation p.G1237E 0.21 unknown(0) TCGA-W3-A828-06 1 103544374 103544374 C T COL11A1 Missense_Mutation p.G110R 0.40 probably_damaging(1) TCGA-W3-A828-06 1 10707814 10707814 G A CASZ1 Intron 0.30 TCGA-W3-A828-06 1 109804476 109804476 T A CELSR2 Missense_Mutation p.S1448R 0.37 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 109878922 109878922 C T SORT1 Nonsense_Mutation p.W437* 0.32 TCGA-W3-A828-06 1 110038318 110038318 C T CYB561D1 Intron 0.26 TCGA-W3-A828-06 1 110038319 110038319 C T CYB561D1 Intron 0.25 TCGA-W3-A828-06 1 110200434 110200434 G A GSTM4 Silent p.L100L 0.39 TCGA-W3-A828-06 1 110200435 110200435 G A GSTM4 Missense_Mutation p.E101K 0.37 deleterious(0.02) benign(0.147) TCGA-W3-A828-06 1 110302389 110302389 C T EPS8L3 Missense_Mutation p.E56K 0.43 tolerated(0.15) possibly_damaging(0.642) TCGA-W3-A828-06 1 111726991 111726991 A C CEPT1 3'UTR 0.16 TCGA-W3-A828-06 1 111892782 111892782 G A PIFO Missense_Mutation p.M148I 0.45 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 1 112304991 112304991 C T DDX20 Intron 0.27 TCGA-W3-A828-06 1 114394720 114394720 G A PTPN22 Missense_Mutation p.P253S 0.48 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 115600200 115600213 TTCGGAGCTTTCTT - TSPAN2 Frame_Shift_Del p.K154Tfs*19 0.39 TCGA-W3-A828-06 1 11562083 11562083 C T PTCHD2 Missense_Mutation p.P345L 0.12 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 1159263 1159263 C T SDF4 Missense_Mutation p.A138T 0.34 deleterious(0) probably_damaging(0.954) TCGA-W3-A828-06 1 1159264 1159264 C T SDF4 Silent p.E137E 0.36 TCGA-W3-A828-06 1 117554319 117554319 G A CD101 Missense_Mutation p.G191E 0.60 tolerated(0.36) benign(0.009) TCGA-W3-A828-06 1 11766432 11766432 G A DRAXIN Silent p.E39E 0.76 TCGA-W3-A828-06 1 118439505 118439505 G A GDAP2 Silent p.I301I 0.48 TCGA-W3-A828-06 1 11897415 11897415 C T CLCN6 Silent p.P718P 0.31 TCGA-W3-A828-06 1 119958121 119958121 G A HSD3B2 Missense_Mutation p.E27K 0.34 tolerated(0.26) benign(0.367) TCGA-W3-A828-06 1 120165634 120165634 C T ZNF697 Silent p.K444K 0.53 TCGA-W3-A828-06 1 12024288 12024288 G A PLOD1 Missense_Mutation p.G420E 0.27 deleterious(0) probably_damaging(0.957) TCGA-W3-A828-06 1 120464335 120464335 C T NOTCH2 Splice_Site p.X1770_splice 0.24 TCGA-W3-A828-06 1 120464336 120464336 C T NOTCH2 Silent p.K1770K 0.25 TCGA-W3-A828-06 1 1234047 1234047 C T ACAP3 Missense_Mutation p.D255N 0.17 deleterious(0.03) benign(0.011) TCGA-W3-A828-06 1 14108137 14108137 A G PRDM2 Missense_Mutation p.K1283E 0.39 unknown(0) TCGA-W3-A828-06 1 143767880 143767880 G A PPIAL4G 5'UTR 0.24 TCGA-W3-A828-06 1 145474518 145474518 G A ANKRD34A Missense_Mutation p.R397K 0.23 deleterious(0.03) possibly_damaging(0.766) TCGA-W3-A828-06 1 145608576 145608576 G A POLR3C Silent p.A77A 0.31 TCGA-W3-A828-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.37 TCGA-W3-A828-06 1 149785084 149785084 C T HIST2H3D Silent p.E51E 0.51 TCGA-W3-A828-06 1 150679133 150679133 C T HORMAD1 Missense_Mutation p.E234K 0.49 deleterious(0.02) possibly_damaging(0.831) TCGA-W3-A828-06 1 151090540 151090540 C T GABPB2 Silent p.Y385Y 0.36 TCGA-W3-A828-06 1 151498202 151498202 G A CGN Missense_Mutation p.E567K 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 151992781 151992781 C T NBPF18P RNA 0.27 TCGA-W3-A828-06 1 152128887 152128887 G A RPTN Missense_Mutation p.R230W 0.33 deleterious(0) possibly_damaging(0.462) TCGA-W3-A828-06 1 152188170 152188170 G A HRNR Missense_Mutation p.P1979S 0.05 unknown(0) TCGA-W3-A828-06 1 152276911 152276911 C T FLG Missense_Mutation p.S3484N 0.28 unknown(0) TCGA-W3-A828-06 1 152277177 152277177 C T FLG Silent p.Q3395Q 0.33 TCGA-W3-A828-06 1 154227682 154227682 C A UBAP2L Missense_Mutation p.P655H 0.34 deleterious(0.02) unknown(0) TCGA-W3-A828-06 1 154461653 154461653 C T SHE Missense_Mutation p.G300R 0.34 deleterious(0.02) benign(0.261) TCGA-W3-A828-06 1 154573978 154573978 G A ADAR Silent p.I380I 0.35 TCGA-W3-A828-06 1 154938806 154938806 C A SHC1 Nonsense_Mutation p.G391* 0.24 TCGA-W3-A828-06 1 155013075 155013075 T A DCST1 Nonsense_Mutation p.L169* 0.45 TCGA-W3-A828-06 1 155030515 155030515 G A ADAM15 Nonsense_Mutation p.W535* 0.43 TCGA-W3-A828-06 1 155176132 155176132 C T THBS3 Missense_Mutation p.A49T 0.33 tolerated(0.27) benign(0.007) TCGA-W3-A828-06 1 155288061 155288061 C T FDPS Silent p.N221N 0.25 TCGA-W3-A828-06 1 155307936 155307936 C T ASH1L Missense_Mutation p.R2916Q 0.30 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-W3-A828-06 1 155324357 155324357 C T ASH1L Missense_Mutation p.E2374K 0.32 deleterious_low_confidence(0.03) probably_damaging(0.958) TCGA-W3-A828-06 1 155895563 155895563 C T KIAA0907 Silent p.K251K 0.22 TCGA-W3-A828-06 1 155979244 155979244 A G SSR2 3'UTR 0.27 TCGA-W3-A828-06 1 156347926 156347926 C T RHBG Silent p.L174L 0.39 TCGA-W3-A828-06 1 156697043 156697043 G A ISG20L2 Silent p.T134T 0.26 TCGA-W3-A828-06 1 156844755 156844755 C T NTRK1 Missense_Mutation p.L437F 0.36 deleterious(0.01) possibly_damaging(0.807) TCGA-W3-A828-06 1 156921440 156921440 T A ARHGEF11 Missense_Mutation p.Q617L 0.40 tolerated(0.05) benign(0.025) TCGA-W3-A828-06 1 157494173 157494173 G A FCRL5 Missense_Mutation p.S712F 0.37 tolerated(0.12) benign(0.261) TCGA-W3-A828-06 1 158152764 158152764 G T CD1D Missense_Mutation p.W235L 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-W3-A828-06 1 158449791 158449791 G A OR10R2 Missense_Mutation p.E42K 0.32 tolerated(0.13) benign(0.023) TCGA-W3-A828-06 1 158606507 158606507 A G SPTA1 Missense_Mutation p.L1745P 0.27 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 15871022 15871022 C T DNAJC16 Missense_Mutation p.R235C 0.21 deleterious(0.03) possibly_damaging(0.77) TCGA-W3-A828-06 1 158724821 158724821 A G OR6K6 Missense_Mutation p.I72M 0.09 tolerated(0.53) benign(0.004) TCGA-W3-A828-06 1 158735587 158735587 C T OR6N1 Missense_Mutation p.E296K 0.27 deleterious(0.01) benign(0.035) TCGA-W3-A828-06 1 15894497 15894497 C T DNAJC16 Missense_Mutation p.S725L 0.34 tolerated(0.13) benign(0.001) TCGA-W3-A828-06 1 159558289 159558289 G A APCS Missense_Mutation p.E155K 0.38 deleterious(0.03) possibly_damaging(0.899) TCGA-W3-A828-06 1 159842918 159842918 C T CCDC19 Missense_Mutation p.E465K 0.39 deleterious(0.02) probably_damaging(0.948) TCGA-W3-A828-06 1 15986373 15986391 TTACCAACTTCAGATGGGT - RSC1A1 Frame_Shift_Del p.P5Tfs*17 0.42 TCGA-W3-A828-06 1 160106159 160106159 C T ATP1A2 Silent p.I854I 0.32 TCGA-W3-A828-06 1 160121853 160121853 G A ATP1A4 Missense_Mutation p.G8E 0.33 tolerated_low_confidence(0.24) benign(0.005) TCGA-W3-A828-06 1 16065109 16065109 G A SLC25A34 Nonsense_Mutation p.W206* 0.19 TCGA-W3-A828-06 1 161132151 161132151 G A USP21 Missense_Mutation p.G251E 0.24 tolerated(0.21) benign(0.241) TCGA-W3-A828-06 1 161789462 161789462 C T ATF6 Nonsense_Mutation p.R317* 0.21 TCGA-W3-A828-06 1 162381804 162381804 C T SH2D1B Translation_Start_Site p.M1? 0.31 deleterious(0) possibly_damaging(0.509) TCGA-W3-A828-06 1 162487893 162487893 T G UHMK1 Missense_Mutation p.D342E 0.32 tolerated(0.13) benign(0.351) TCGA-W3-A828-06 1 162546732 162546732 T C UAP1 Missense_Mutation p.V149A 0.23 deleterious(0) benign(0.036) TCGA-W3-A828-06 1 16359751 16359751 G A CLCNKA Silent p.E672E 0.25 TCGA-W3-A828-06 1 166974549 166974549 C T MAEL Nonsense_Mutation p.Q254* 0.25 TCGA-W3-A828-06 1 16921494 16921494 A T NBPF1 5'UTR 0.12 TCGA-W3-A828-06 1 16921495 16921495 G A NBPF1 5'UTR 0.12 TCGA-W3-A828-06 1 171761341 171761341 G A METTL13 Silent p.L553L 0.29 TCGA-W3-A828-06 1 173155964 173155964 C T TNFSF4 Silent p.K81K 0.30 TCGA-W3-A828-06 1 173880991 173880991 G A SERPINC1 Silent p.Y190Y 0.30 TCGA-W3-A828-06 1 174927156 174927156 C G RABGAP1L 3'UTR 0.47 TCGA-W3-A828-06 1 176671859 176671859 G A PAPPA2 Missense_Mutation p.G1118E 0.59 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 177245471 177245471 G A BRINP2 Missense_Mutation p.E305K 0.32 deleterious(0.02) benign(0.023) TCGA-W3-A828-06 1 178490251 178490251 C A TEX35 Intron 0.21 TCGA-W3-A828-06 1 17961331 17961331 G T ARHGEF10L Missense_Mutation p.G583C 0.62 deleterious(0) probably_damaging(0.993) TCGA-W3-A828-06 1 180974475 180974475 G A STX6 Missense_Mutation p.L54F 0.26 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 1 181620530 181620530 C T CACNA1E Silent p.I336I 0.29 TCGA-W3-A828-06 1 182874632 182874632 C T SHCBP1L Silent p.K445K 0.25 TCGA-W3-A828-06 1 183914760 183914760 A T COLGALT2 Intron 0.42 TCGA-W3-A828-06 1 183914761 183914761 G A COLGALT2 Intron 0.39 TCGA-W3-A828-06 1 185062224 185062224 C T RNF2 Silent p.L94L 0.23 TCGA-W3-A828-06 1 185245791 185245791 C T SWT1 Missense_Mutation p.T855I 0.25 tolerated(0.11) benign(0.002) TCGA-W3-A828-06 1 185703885 185703885 G A HMCN1 5'UTR 0.32 TCGA-W3-A828-06 1 185958706 185958706 G A HMCN1 Silent p.E1045E 0.35 TCGA-W3-A828-06 1 185984362 185984362 G A HMCN1 Missense_Mutation p.E1568K 0.39 probably_damaging(0.996) TCGA-W3-A828-06 1 186022138 186022138 G A HMCN1 Missense_Mutation p.G2211E 0.33 possibly_damaging(0.737) TCGA-W3-A828-06 1 186037136 186037136 C T HMCN1 Missense_Mutation p.P2626S 0.22 probably_damaging(0.999) TCGA-W3-A828-06 1 186304530 186304530 G A TPR Silent p.L1617L 0.39 TCGA-W3-A828-06 1 18692191 18692191 G A IGSF21 Missense_Mutation p.V339I 0.36 tolerated(0.22) benign(0.013) TCGA-W3-A828-06 1 18960817 18960817 G A PAX7 Missense_Mutation p.G36S 0.42 tolerated(0.1) probably_damaging(1) TCGA-W3-A828-06 1 190067343 190067343 T C BRINP3 Silent p.Q702Q 0.32 TCGA-W3-A828-06 1 192780771 192780771 C T RGS2 3'UTR 0.30 TCGA-W3-A828-06 1 196643016 196643016 C T CFH Missense_Mutation p.P92S 0.38 tolerated(0.12) possibly_damaging(0.845) TCGA-W3-A828-06 1 196799638 196799638 G A CFHR1 Missense_Mutation p.G206R 0.29 tolerated(0.1) probably_damaging(0.999) TCGA-W3-A828-06 1 200555245 200555245 C T KIF14 Silent p.R1075R 0.30 TCGA-W3-A828-06 1 201104871 201104871 C A TMEM9 Nonsense_Mutation p.E158* 0.32 TCGA-W3-A828-06 1 202097540 202097540 C A GPR37L1 Nonsense_Mutation p.C434* 0.17 TCGA-W3-A828-06 1 202866018 202866018 T A KLHL12 Missense_Mutation p.K301N 0.29 tolerated(0.08) possibly_damaging(0.794) TCGA-W3-A828-06 1 205274355 205274355 C T NUAK2 Silent p.G265G 0.33 TCGA-W3-A828-06 1 206613378 206613378 C T SRGAP2 Silent p.V521V 0.22 TCGA-W3-A828-06 1 206613379 206613379 C T SRGAP2 Silent p.L522L 0.22 TCGA-W3-A828-06 1 206634879 206634879 C T SRGAP2 3'UTR 0.50 TCGA-W3-A828-06 1 207111049 207111049 T A PIGR Nonsense_Mutation p.R146* 0.33 TCGA-W3-A828-06 1 207245683 207245683 C T PFKFB2 Silent p.L495L 0.35 TCGA-W3-A828-06 1 208234105 208234105 G A PLXNA2 Silent p.S888S 0.22 TCGA-W3-A828-06 1 208234106 208234106 G T PLXNA2 Missense_Mutation p.S888Y 0.22 tolerated(0.12) probably_damaging(0.944) TCGA-W3-A828-06 1 20981947 20981947 G A DDOST Silent p.L196L 0.29 TCGA-W3-A828-06 1 209907812 209907812 C T HSD11B1 Silent p.I275I 0.28 TCGA-W3-A828-06 1 209956627 209956627 G A C1orf74 Missense_Mutation p.S118F 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 210522382 210522382 C T HHAT Intron 0.33 TCGA-W3-A828-06 1 210977330 210977330 G A KCNH1 Silent p.S547S 0.38 TCGA-W3-A828-06 1 21143948 21143948 C A EIF4G3 Missense_Mutation p.K1434N 0.32 tolerated(0.05) benign(0.002) TCGA-W3-A828-06 1 212588113 212588113 G A TMEM206 5'UTR 0.37 TCGA-W3-A828-06 1 214531294 214531294 G A PTPN14 Nonsense_Mutation p.Q1179* 0.30 TCGA-W3-A828-06 1 214531295 214531295 G A PTPN14 Silent p.I1178I 0.30 TCGA-W3-A828-06 1 215298094 215298094 G A KCNK2 Splice_Site p.X159_splice 0.28 TCGA-W3-A828-06 1 215821910 215821910 G A USH2A Missense_Mutation p.R4848W 0.31 benign(0.003) TCGA-W3-A828-06 1 216595568 216595568 G A USH2A Silent p.F37F 0.33 TCGA-W3-A828-06 1 220364546 220364546 G A RAB3GAP2 Missense_Mutation p.P451S 0.29 deleterious(0) benign(0.062) TCGA-W3-A828-06 1 220440069 220440069 C T RAB3GAP2 Intron 0.24 TCGA-W3-A828-06 1 220440463 220440463 G A RAB3GAP2 Intron 0.26 TCGA-W3-A828-06 1 220440845 220440845 G A RAB3GAP2 Intron 0.33 TCGA-W3-A828-06 1 220936254 220936254 G A MARC2 Silent p.V204V 0.30 TCGA-W3-A828-06 1 22174195 22174195 G A HSPG2 Missense_Mutation p.P2671L 0.23 probably_damaging(0.996) TCGA-W3-A828-06 1 22174198 22174198 A C HSPG2 Missense_Mutation p.L2670R 0.23 probably_damaging(1) TCGA-W3-A828-06 1 22214035 22214035 G A HSPG2 Missense_Mutation p.S279F 0.25 benign(0.013) TCGA-W3-A828-06 1 224482041 224482041 G A NVL Missense_Mutation p.P418L 0.33 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 1 225155498 225155498 T A DNAH14 Intron 0.50 TCGA-W3-A828-06 1 227834290 227834290 G A ZNF678 5'UTR 0.26 TCGA-W3-A828-06 1 228479780 228479780 C G OBSCN Missense_Mutation p.I3936M 0.31 probably_damaging(0.937) TCGA-W3-A828-06 1 229577714 229577714 G A NUP133 Silent p.S1136S 0.40 TCGA-W3-A828-06 1 231906718 231906718 C T DISC1 Silent p.S512S 0.32 TCGA-W3-A828-06 1 232626721 232626721 C A SIPA1L2 Missense_Mutation p.V569F 0.31 deleterious(0) possibly_damaging(0.873) TCGA-W3-A828-06 1 235715257 235715257 G A GNG4 3'UTR 0.44 TCGA-W3-A828-06 1 235972043 235972043 G A LYST Missense_Mutation p.A692V 0.32 tolerated(0.14) probably_damaging(0.99) TCGA-W3-A828-06 1 237774207 237774207 G A RYR2 Missense_Mutation p.R1610Q 0.23 benign(0.198) TCGA-W3-A828-06 1 237791261 237791261 G A RYR2 Silent p.T2107T 0.35 TCGA-W3-A828-06 1 237870421 237870421 G A RYR2 Silent p.E3251E 0.42 TCGA-W3-A828-06 1 240637425 240637425 C T FMN2 Intron 0.37 TCGA-W3-A828-06 1 240969534 240969534 C T RGS7 Missense_Mutation p.G392E 0.40 tolerated(0.08) probably_damaging(1) TCGA-W3-A828-06 1 24122384 24122384 G A GALE 3'UTR 0.47 TCGA-W3-A828-06 1 24463754 24463754 G A IL22RA1 Silent p.I74I 0.49 TCGA-W3-A828-06 1 247588615 247588615 C T NLRP3 Nonsense_Mutation p.Q624* 0.41 TCGA-W3-A828-06 1 247654888 247654888 C A OR2W5 RNA 0.32 TCGA-W3-A828-06 1 247737584 247737584 G A GCSAML Missense_Mutation p.R103K 0.27 tolerated(0.17) benign(0.07) TCGA-W3-A828-06 1 248366835 248366835 G A OR2M3 Missense_Mutation p.G156R 0.35 deleterious(0.02) benign(0.229) TCGA-W3-A828-06 1 248458858 248458858 G A OR2T12 Missense_Mutation p.P8L 0.37 tolerated(0.05) benign(0) TCGA-W3-A828-06 1 248550941 248550941 G A OR2T6 Missense_Mutation p.G11D 0.34 tolerated(1) benign(0.001) TCGA-W3-A828-06 1 25599179 25599179 C G RHD Silent p.S47S 0.45 TCGA-W3-A828-06 1 28218539 28218539 G A RPA2 3'UTR 0.60 TCGA-W3-A828-06 1 29585137 29585137 G A PTPRU Missense_Mutation p.R109Q 0.69 tolerated(0.07) probably_damaging(0.992) TCGA-W3-A828-06 1 29585138 29585138 G A PTPRU Silent p.R109R 0.69 TCGA-W3-A828-06 1 31452908 31452908 C T PUM1 Splice_Site p.X452_splice 0.24 TCGA-W3-A828-06 1 32632892 32632892 G A KPNA6 Silent p.Q413Q 0.26 TCGA-W3-A828-06 1 32646052 32646052 C T TXLNA Nonsense_Mutation p.Q36* 0.34 TCGA-W3-A828-06 1 32687979 32687979 G A EIF3I 5'UTR 0.74 TCGA-W3-A828-06 1 33778147 33778147 G A A3GALT2 Missense_Mutation p.T51I 0.54 tolerated(0.22) benign(0.002) TCGA-W3-A828-06 1 3417788 3417788 C T MEGF6 Missense_Mutation p.G800E 0.17 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 1 37967458 37967458 G A MEAF6 Silent p.S160S 0.26 TCGA-W3-A828-06 1 39782182 39782182 C T MACF1 Missense_Mutation p.A1195V 0.46 benign(0.046) TCGA-W3-A828-06 1 39782183 39782183 C T MACF1 Silent p.A1195A 0.49 TCGA-W3-A828-06 1 39801748 39801748 C T MACF1 Intron 0.41 TCGA-W3-A828-06 1 39988745 39988745 G A BMP8A Missense_Mutation p.D339N 0.25 tolerated(1) benign(0.114) TCGA-W3-A828-06 1 41107566 41107566 G A RIMS3 Missense_Mutation p.S11F 0.47 deleterious_low_confidence(0.01) benign(0.396) TCGA-W3-A828-06 1 41979056 41979056 G A HIVEP3 Missense_Mutation p.P1946S 0.21 possibly_damaging(0.478) TCGA-W3-A828-06 1 43630132 43630132 C A EBNA1BP2 Missense_Mutation p.M356I 0.38 tolerated(0.07) benign(0.053) TCGA-W3-A828-06 1 43903494 43903494 C T SZT2 Silent p.S2086S 0.35 TCGA-W3-A828-06 1 43903495 43903495 C T SZT2 Missense_Mutation p.R2087C 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-W3-A828-06 1 44364897 44364897 T C ST3GAL3 Silent p.S242S 0.27 TCGA-W3-A828-06 1 45480445 45480445 A G UROD Missense_Mutation p.E271G 0.46 tolerated(0.07) benign(0.067) TCGA-W3-A828-06 1 47407038 47407038 G A CYP4A11 Missense_Mutation p.S23F 0.21 tolerated(0.81) benign(0.005) TCGA-W3-A828-06 1 4829937 4829937 C T AJAP1 Missense_Mutation p.T285I 0.37 deleterious(0) benign(0.005) TCGA-W3-A828-06 1 50642835 50642835 G A ELAVL4 Missense_Mutation p.G126R 0.32 deleterious(0.03) probably_damaging(0.977) TCGA-W3-A828-06 1 52740223 52740223 C T ZFYVE9 Missense_Mutation p.P905S 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A828-06 1 52759171 52759171 C T ZFYVE9 Silent p.F1024F 0.25 TCGA-W3-A828-06 1 53555497 53555497 G A SLC1A7 Missense_Mutation p.L446F 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 53741369 53741369 C G LRP8 Missense_Mutation p.A314P 0.24 deleterious(0) possibly_damaging(0.653) TCGA-W3-A828-06 1 54610258 54610258 C T CDCP2 Missense_Mutation p.G103E 0.54 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 55564205 55564205 C T USP24 Silent p.K1799K 0.25 TCGA-W3-A828-06 1 57378088 57378088 C T C8A Missense_Mutation p.H465Y 0.45 tolerated(0.57) benign(0.014) TCGA-W3-A828-06 1 57480650 57480650 G A DAB1 Silent p.V450V 0.44 TCGA-W3-A828-06 1 6194285 6194285 C T CHD5 Missense_Mutation p.G1016E 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-W3-A828-06 1 6195316 6195316 G A CHD5 Silent p.V948V 0.18 TCGA-W3-A828-06 1 62739897 62739897 G A KANK4 Silent p.I293I 0.42 TCGA-W3-A828-06 1 62970358 62970358 C T DOCK7 Silent p.R1538R 0.23 TCGA-W3-A828-06 1 65098360 65098360 C T CACHD1 Silent p.D190D 0.50 TCGA-W3-A828-06 1 67266921 67266921 T A INSL5 5'UTR 0.50 TCGA-W3-A828-06 1 68512811 68512811 C T DIRAS3 Nonsense_Mutation p.W57* 0.25 TCGA-W3-A828-06 1 72748264 72748264 G A NEGR1 5'UTR 0.43 TCGA-W3-A828-06 1 72748265 72748265 G A NEGR1 5'UTR 0.43 TCGA-W3-A828-06 1 74507351 74507351 C T LRRIQ3 Missense_Mutation p.D422N 0.48 tolerated(0.18) possibly_damaging(0.704) TCGA-W3-A828-06 1 7700474 7700474 C T CAMTA1 Silent p.V175V 0.33 TCGA-W3-A828-06 1 79121089 79121089 C A IFI44 Missense_Mutation p.L245M 0.39 deleterious(0) possibly_damaging(0.842) TCGA-W3-A828-06 1 79470905 79470905 C T ELTD1 Splice_Site p.X8_splice 0.26 TCGA-W3-A828-06 1 85630287 85630287 C T SYDE2 Missense_Mutation p.D1003N 0.36 tolerated(0.07) probably_damaging(1) TCGA-W3-A828-06 1 86896577 86896577 C A CLCA2 Missense_Mutation p.R170S 0.29 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 89329693 89329693 C T GTF2B Missense_Mutation p.D77N 0.45 tolerated(0.18) benign(0) TCGA-W3-A828-06 1 89578257 89578257 G A GBP2 Silent p.V420V 0.29 TCGA-W3-A828-06 1 89650954 89650954 G A GBP4 Missense_Mutation p.L636F 0.30 tolerated_low_confidence(0.06) benign(0.077) TCGA-W3-A828-06 1 897753 897753 A T KLHL17 Missense_Mutation p.S244C 0.67 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 90048781 90048781 C T LRRC8B Missense_Mutation p.S191L 0.39 tolerated(0.09) benign(0.006) TCGA-W3-A828-06 1 90180427 90180427 C T LRRC8C Silent p.I766I 0.24 TCGA-W3-A828-06 1 91405374 91405374 G T ZNF644 Missense_Mutation p.Q513K 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-W3-A828-06 1 92470122 92470122 G A BRDT Missense_Mutation p.R847Q 0.43 tolerated(0.15) benign(0.019) TCGA-W3-A828-06 1 9305565 9305565 G A H6PD Missense_Mutation p.G191E 0.75 tolerated(0.6) benign(0.023) TCGA-W3-A828-06 1 94343048 94343048 G A DNTTIP2 Missense_Mutation p.S148L 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 1 94577081 94577081 C T ABCA4 Missense_Mutation p.G72E 0.29 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 1 9656923 9656923 G A TMEM201 Missense_Mutation p.D81N 0.24 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 1 9777127 9777127 G A PIK3CD Silent p.Q297Q 0.23 TCGA-W3-A828-06 1 979714 979714 G A AGRN Missense_Mutation p.V717M 0.38 deleterious(0) probably_damaging(0.969) TCGA-W3-A828-06 20 10603818 10603818 T A SLX4IP Missense_Mutation p.S340T 0.45 tolerated(0.25) possibly_damaging(0.515) TCGA-W3-A828-06 20 10626668 10626668 G A JAG1 Silent p.S650S 0.28 TCGA-W3-A828-06 20 10626669 10626669 G A JAG1 Missense_Mutation p.S650F 0.28 deleterious(0.02) possibly_damaging(0.702) TCGA-W3-A828-06 20 16030486 16030486 G A MACROD2 Missense_Mutation p.D415N 0.22 tolerated_low_confidence(0.06) benign(0.121) TCGA-W3-A828-06 20 1629873 1629873 G A SIRPG Silent p.F85F 0.37 TCGA-W3-A828-06 20 1902320 1902320 C T SIRPA Missense_Mutation p.P239L 0.35 deleterious(0.02) possibly_damaging(0.473) TCGA-W3-A828-06 20 23065697 23065697 G A CD93 Missense_Mutation p.P378L 0.29 tolerated(0.13) benign(0.014) TCGA-W3-A828-06 20 2321140 2321140 G A TGM3 Silent p.R665R 0.32 TCGA-W3-A828-06 20 2464036 2464036 C T ZNF343 Missense_Mutation p.R524K 0.30 tolerated(0.96) benign(0.007) TCGA-W3-A828-06 20 25295563 25295563 C T ABHD12 Missense_Mutation p.R206K 0.30 deleterious(0) possibly_damaging(0.853) TCGA-W3-A828-06 20 257348 257348 G A C20orf96 Intron 0.39 TCGA-W3-A828-06 20 2637655 2637655 C T NOP56 Intron 0.26 TCGA-W3-A828-06 20 2840732 2840732 G T VPS16 Missense_Mutation p.A59S 0.29 tolerated(1) benign(0.002) TCGA-W3-A828-06 20 30028411 30028411 G A DEFB123 5'UTR 0.31 TCGA-W3-A828-06 20 3096013 3096013 C T UBOX5 Missense_Mutation p.G452E 0.28 tolerated(0.15) possibly_damaging(0.461) TCGA-W3-A828-06 20 31830303 31830303 C T BPIFA1 Silent p.I247I 0.26 TCGA-W3-A828-06 20 34135207 34135207 G A ERGIC3 Missense_Mutation p.D138N 0.24 tolerated(0.51) benign(0.012) TCGA-W3-A828-06 20 34220245 34220245 C T CPNE1 Silent p.R129R 0.21 TCGA-W3-A828-06 20 34288725 34288725 G A ROMO1 Missense_Mutation p.G46E 0.31 deleterious(0) possibly_damaging(0.689) TCGA-W3-A828-06 20 35293462 35293462 G T NDRG3 Missense_Mutation p.A266E 0.30 tolerated(0.07) benign(0.38) TCGA-W3-A828-06 20 35317126 35317126 C T NDRG3 Missense_Mutation p.G52E 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-W3-A828-06 20 35526272 35526272 G T SAMHD1 Missense_Mutation p.Q567K 0.32 tolerated(0.57) benign(0.001) TCGA-W3-A828-06 20 36431348 36431348 C T CTNNBL1 Missense_Mutation p.H371Y 0.31 deleterious(0.02) benign(0.133) TCGA-W3-A828-06 20 3682201 3682201 G A SIGLEC1 Missense_Mutation p.P439L 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 20 3845043 3845043 T C MAVS Missense_Mutation p.S256P 0.34 tolerated(0.12) benign(0.002) TCGA-W3-A828-06 20 39792753 39792753 G A PLCG1 Missense_Mutation p.V377I 0.32 tolerated(1) benign(0.023) TCGA-W3-A828-06 20 43625913 43625913 C T STK4 Missense_Mutation p.P266L 0.22 deleterious(0) probably_damaging(0.992) TCGA-W3-A828-06 20 43851270 43851270 C T SEMG2 Missense_Mutation p.H333Y 0.27 tolerated(0.26) benign(0.403) TCGA-W3-A828-06 20 44037573 44037573 C T DBNDD2 Missense_Mutation p.S193L 0.24 tolerated(0.09) benign(0.022) TCGA-W3-A828-06 20 44506320 44506320 C A ZSWIM3 Missense_Mutation p.L375M 0.35 tolerated(0.38) probably_damaging(0.999) TCGA-W3-A828-06 20 44639851 44639851 C T MMP9 Missense_Mutation p.S240F 0.35 deleterious(0.05) possibly_damaging(0.892) TCGA-W3-A828-06 20 45014856 45014856 G A ELMO2 Missense_Mutation p.A195V 0.27 deleterious(0.03) probably_damaging(0.944) TCGA-W3-A828-06 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.34 tolerated(0.22) benign(0.019) TCGA-W3-A828-06 20 47782617 47782617 G A STAU1 Missense_Mutation p.S41F 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-W3-A828-06 20 48156126 48156126 G A PTGIS Silent p.A218A 0.44 TCGA-W3-A828-06 20 55917827 55917827 G A SPO11 Silent p.R334R 0.26 TCGA-W3-A828-06 20 56190569 56190569 C T ZBP1 Silent p.R109R 0.34 TCGA-W3-A828-06 20 57035971 57035971 C T APCDD1L Missense_Mutation p.D461N 0.35 tolerated(0.37) benign(0.003) TCGA-W3-A828-06 20 57466805 57466805 G A GNAS Intron 0.27 TCGA-W3-A828-06 20 57480491 57480491 C A GNAS Nonsense_Mutation p.C805* 0.08 TCGA-W3-A828-06 20 57766780 57766780 G A ZNF831 Missense_Mutation p.G236R 0.33 tolerated(0.42) benign(0) TCGA-W3-A828-06 20 60551355 60551355 C T TAF4 Missense_Mutation p.G1043S 0.40 possibly_damaging(0.672) TCGA-W3-A828-06 20 62198610 62198610 G A HELZ2 Missense_Mutation p.P701S 0.48 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 20 62223463 62223463 G A GMEB2 Silent p.F288F 0.26 TCGA-W3-A828-06 20 62597511 62597511 C T ZNF512B Silent p.R339R 0.31 TCGA-W3-A828-06 20 62705712 62705712 C T RGS19 Missense_Mutation p.E83K 0.50 deleterious(0) possibly_damaging(0.682) TCGA-W3-A828-06 20 8862380 8862380 C T PLCB1 Missense_Mutation p.H1179Y 0.36 tolerated(0.57) benign(0.002) TCGA-W3-A828-06 20 9382161 9382161 C T PLCB4 Missense_Mutation p.P512L 0.24 deleterious(0.05) benign(0.386) TCGA-W3-A828-06 20 9453971 9453971 C T PLCB4 Nonsense_Mutation p.Q1140* 0.23 TCGA-W3-A828-06 20 9520177 9520177 G A PAK7 Missense_Mutation p.P698S 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-W3-A828-06 21 15558363 15558363 G A LIPI Missense_Mutation p.H175Y 0.34 tolerated(0.39) probably_damaging(0.986) TCGA-W3-A828-06 21 32007651 32007651 C A KRTAP20-2 Silent p.G23G 0.30 TCGA-W3-A828-06 21 34022609 34022609 G A SYNJ1 Silent p.I1013I 0.31 TCGA-W3-A828-06 21 34861057 34861057 C T DNAJC28 Missense_Mutation p.G215E 0.27 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 21 40619730 40619730 G A BRWD1 Missense_Mutation p.S793F 0.37 tolerated(0.14) benign(0.003) TCGA-W3-A828-06 21 41239402 41239402 G A PCP4 5'UTR 0.21 TCGA-W3-A828-06 21 41385288 41385288 G A DSCAM Silent p.Y1904Y 0.23 TCGA-W3-A828-06 21 41550934 41550934 T C DSCAM Missense_Mutation p.Y956C 0.36 deleterious(0) benign(0.042) TCGA-W3-A828-06 21 41559115 41559115 C T DSCAM Missense_Mutation p.G908R 0.33 tolerated(0.65) possibly_damaging(0.498) TCGA-W3-A828-06 21 43221883 43221883 C T PRDM15 Splice_Site p.X1348_splice 0.33 TCGA-W3-A828-06 21 45212603 45212603 G A RRP1 Silent p.T89T 0.28 TCGA-W3-A828-06 21 45212604 45212604 G A RRP1 Missense_Mutation p.E90K 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-W3-A828-06 21 45483444 45483444 C T TRAPPC10 Silent p.F272F 0.29 TCGA-W3-A828-06 21 45876698 45876698 G A LRRC3 Silent p.E57E 0.16 TCGA-W3-A828-06 21 46306302 46306302 G A ITGB2 Missense_Mutation p.P764L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 21 47549151 47549151 C T COL6A2 Intron 0.31 TCGA-W3-A828-06 22 19799869 19799869 C T GNB1L Missense_Mutation p.S119N 0.31 deleterious(0.03) benign(0.196) TCGA-W3-A828-06 22 20104064 20104064 G A TRMT2A Silent p.P32P 0.28 TCGA-W3-A828-06 22 20456647 20456647 G A RIMBP3 Missense_Mutation p.P1552L 0.50 tolerated(0.07) benign(0.048) TCGA-W3-A828-06 22 21088102 21088102 T A PI4KA Missense_Mutation p.H1361L 0.27 deleterious(0.01) possibly_damaging(0.521) TCGA-W3-A828-06 22 21385324 21385324 C T SLC7A4 Missense_Mutation p.E260K 0.27 deleterious(0.04) possibly_damaging(0.665) TCGA-W3-A828-06 22 22869511 22869511 T G ZNF280A Silent p.L148L 0.38 TCGA-W3-A828-06 22 23523925 23523925 C T BCR Silent p.L260L 0.28 TCGA-W3-A828-06 22 24210771 24210771 C T AP000350.10 Missense_Mutation p.P40L 0.40 deleterious(0) probably_damaging(0.948) TCGA-W3-A828-06 22 25155909 25155909 C T PIWIL3 Silent p.E50E 0.36 TCGA-W3-A828-06 22 26422957 26422957 A - MYO18B Frame_Shift_Del p.L2340Sfs*16 0.24 TCGA-W3-A828-06 22 26423135 26423135 C T MYO18B Missense_Mutation p.L2399F 0.25 deleterious(0.05) benign(0.273) TCGA-W3-A828-06 22 30127243 30127243 G A ZMAT5 Missense_Mutation p.P162S 0.35 tolerated(0.73) benign(0.001) TCGA-W3-A828-06 22 30416463 30416463 T G MTMR3 Missense_Mutation p.S939A 0.40 tolerated_low_confidence(0.59) benign(0.001) TCGA-W3-A828-06 22 31289175 31289175 G A OSBP2 Missense_Mutation p.E646K 0.41 deleterious(0) probably_damaging(0.983) TCGA-W3-A828-06 22 31333580 31333580 G A MORC2 Silent p.T434T 0.20 TCGA-W3-A828-06 22 31661992 31661992 C T LIMK2 Silent p.F284F 0.32 TCGA-W3-A828-06 22 32072956 32072956 G A PRR14L 3'Flank 0.31 TCGA-W3-A828-06 22 32756276 32756276 C T RFPL3 Silent p.F137F 0.25 TCGA-W3-A828-06 22 37395884 37395884 G A TEX33 Nonsense_Mutation p.R211* 0.44 TCGA-W3-A828-06 22 37873013 37873013 C A MFNG Missense_Mutation p.V190L 0.36 deleterious(0.02) probably_damaging(0.986) TCGA-W3-A828-06 22 38038714 38038714 G A SH3BP1 Intron 0.18 TCGA-W3-A828-06 22 38119807 38119807 C T TRIOBP Missense_Mutation p.S415F 0.41 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-W3-A828-06 22 38122339 38122339 G A TRIOBP Missense_Mutation p.G1259E 0.42 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-W3-A828-06 22 39262846 39262846 G A CBX6 Missense_Mutation p.P203S 0.33 deleterious(0) possibly_damaging(0.585) TCGA-W3-A828-06 22 43206844 43206844 G A ARFGAP3 Silent p.L391L 0.26 TCGA-W3-A828-06 22 50684221 50684221 C T HDAC10 Silent p.R623R 0.38 TCGA-W3-A828-06 22 50686439 50686439 G A HDAC10 Missense_Mutation p.P406L 0.46 deleterious(0.04) possibly_damaging(0.616) TCGA-W3-A828-06 22 50832357 50832357 T G PPP6R2 Missense_Mutation p.L7W 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 22 50899003 50899003 G A SBF1 Missense_Mutation p.R1036W 0.31 deleterious(0.02) possibly_damaging(0.471) TCGA-W3-A828-06 2 100209875 100209875 G A AFF3 Missense_Mutation p.R775W 0.39 deleterious(0) probably_damaging(0.992) TCGA-W3-A828-06 2 102459096 102459096 G T MAP4K4 Silent p.G325G 0.38 TCGA-W3-A828-06 2 108627046 108627046 A G SLC5A7 Missense_Mutation p.N491S 0.28 tolerated(0.37) benign(0.032) TCGA-W3-A828-06 2 111428116 111428116 T G BUB1 Missense_Mutation p.H151P 0.35 tolerated(0.54) benign(0.014) TCGA-W3-A828-06 2 112933371 112933371 C T FBLN7 Missense_Mutation p.P163S 0.24 tolerated(0.06) possibly_damaging(0.458) TCGA-W3-A828-06 2 113887152 113887152 G A IL1RN Splice_Site p.X42_splice 0.33 TCGA-W3-A828-06 2 116548736 116548736 C T DPP10 Silent p.I541I 0.31 TCGA-W3-A828-06 2 11725378 11725378 T G GREB1 Silent p.G331G 0.34 TCGA-W3-A828-06 2 11964770 11964770 C T LPIN1 Silent p.L927L 0.38 TCGA-W3-A828-06 2 120005291 120005291 G A STEAP3 Missense_Mutation p.A187T 0.16 tolerated(0.77) benign(0.001) TCGA-W3-A828-06 2 120438757 120438757 T A TMEM177 Missense_Mutation p.F110I 0.30 deleterious(0) possibly_damaging(0.718) TCGA-W3-A828-06 2 121747721 121747721 G A GLI2 Missense_Mutation p.E1411K 0.23 tolerated(0.07) benign(0.339) TCGA-W3-A828-06 2 125262010 125262010 G A CNTNAP5 Missense_Mutation p.D401N 0.24 tolerated(0.48) benign(0.167) TCGA-W3-A828-06 2 125555876 125555876 G A CNTNAP5 Missense_Mutation p.V1065I 0.24 tolerated(0.06) benign(0.099) TCGA-W3-A828-06 2 131521548 131521548 C T AMER3 Missense_Mutation p.P635S 0.28 tolerated(0.29) benign(0.021) TCGA-W3-A828-06 2 131521575 131521575 G A AMER3 Missense_Mutation p.E644K 0.35 tolerated(0.18) benign(0.11) TCGA-W3-A828-06 2 131521776 131521776 G A AMER3 Missense_Mutation p.A711T 0.30 tolerated(0.15) benign(0.063) TCGA-W3-A828-06 2 133014597 133014597 A T MIR663B RNA 0.17 TCGA-W3-A828-06 2 133014598 133014598 G A MIR663B RNA 0.17 TCGA-W3-A828-06 2 133489328 133489328 G A NCKAP5 Missense_Mutation p.P1809S 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-W3-A828-06 2 135011990 135011990 C T MGAT5 Missense_Mutation p.P6S 0.31 deleterious_low_confidence(0.01) benign(0.431) TCGA-W3-A828-06 2 135011991 135011991 C T MGAT5 Missense_Mutation p.P6L 0.33 deleterious_low_confidence(0.04) benign(0.006) TCGA-W3-A828-06 2 135893216 135893216 C T RAB3GAP1 Missense_Mutation p.P546L 0.37 tolerated(0.23) benign(0.001) TCGA-W3-A828-06 2 136409531 136409531 C T R3HDM1 Missense_Mutation p.P618S 0.20 tolerated(1) benign(0) TCGA-W3-A828-06 2 136545849 136545849 A T LCT 3'UTR 0.29 TCGA-W3-A828-06 2 136545851 136545851 G T LCT 3'UTR 0.30 TCGA-W3-A828-06 2 141116507 141116507 G A LRP1B Missense_Mutation p.L3714F 0.33 benign(0.004) TCGA-W3-A828-06 2 141267533 141267533 G A LRP1B Missense_Mutation p.P2788S 0.33 possibly_damaging(0.876) TCGA-W3-A828-06 2 152321162 152321162 G A RIF1 Missense_Mutation p.E1710K 0.40 tolerated(0.09) possibly_damaging(0.52) TCGA-W3-A828-06 2 152432679 152432679 C T NEB Missense_Mutation p.E5632K 0.32 possibly_damaging(0.801) TCGA-W3-A828-06 2 152541322 152541322 A T NEB Silent p.L935L 0.21 TCGA-W3-A828-06 2 153000475 153000475 G A STAM2 Silent p.S190S 0.33 TCGA-W3-A828-06 2 163279877 163279877 C T KCNH7 Nonsense_Mutation p.W708* 0.29 TCGA-W3-A828-06 2 165551668 165551668 G A COBLL1 Missense_Mutation p.S783L 0.26 tolerated(1) benign(0) TCGA-W3-A828-06 2 165946985 165946985 G A SCN3A Missense_Mutation p.T1893I 0.29 deleterious(0) probably_damaging(0.962) TCGA-W3-A828-06 2 166848783 166848783 G A SCN1A Missense_Mutation p.P1668S 0.30 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 2 166898933 166898933 C T SCN1A Missense_Mutation p.G682E 0.37 tolerated(0.07) possibly_damaging(0.813) TCGA-W3-A828-06 2 167141225 167141225 G A SCN9A Missense_Mutation p.A571V 0.33 tolerated(0.11) probably_damaging(0.962) TCGA-W3-A828-06 2 168099665 168099665 C T XIRP2 Missense_Mutation p.S588F 0.25 probably_damaging(0.979) TCGA-W3-A828-06 2 168100846 168100846 C T XIRP2 Missense_Mutation p.L982F 0.25 probably_damaging(0.997) TCGA-W3-A828-06 2 169780204 169780204 C G ABCB11 Silent p.G1298G 0.22 TCGA-W3-A828-06 2 169780205 169780205 C T ABCB11 Missense_Mutation p.G1298E 0.22 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 2 174229555 174229555 G A CDCA7 Silent p.P244P 0.33 TCGA-W3-A828-06 2 175324674 175324674 G C GPR155 Missense_Mutation p.T568S 0.39 tolerated(0.68) benign(0.002) TCGA-W3-A828-06 2 175335246 175335246 G A GPR155 Missense_Mutation p.L300F 0.27 tolerated(0.07) benign(0.169) TCGA-W3-A828-06 2 179197478 179197478 G A OSBPL6 Silent p.L161L 0.51 TCGA-W3-A828-06 2 179403903 179403903 C T TTN Missense_Mutation p.R32920Q 0.30 TCGA-W3-A828-06 2 179438562 179438562 G A TTN Silent p.A24099A 0.24 TCGA-W3-A828-06 2 179464021 179464021 G A TTN Silent p.V18833V 0.25 TCGA-W3-A828-06 2 179471754 179471754 G A TTN Missense_Mutation p.P17859S 0.31 TCGA-W3-A828-06 2 179538360 179538360 C T TTN Missense_Mutation p.V11596M 0.26 TCGA-W3-A828-06 2 179538386 179538386 T A TTN Missense_Mutation p.K11587I 0.37 TCGA-W3-A828-06 2 179579149 179579149 C T TTN Nonsense_Mutation p.W8784* 0.32 TCGA-W3-A828-06 2 179579150 179579150 C T TTN Nonsense_Mutation p.W8784* 0.31 TCGA-W3-A828-06 2 179606619 179606619 C T TTN Missense_Mutation p.E3781K 0.23 TCGA-W3-A828-06 2 179638772 179638772 G A TTN Missense_Mutation p.L2375F 0.26 TCGA-W3-A828-06 2 179701637 179701637 C T CCDC141 Missense_Mutation p.E1437K 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 2 179702427 179702427 C T CCDC141 Silent p.G1173G 0.32 TCGA-W3-A828-06 2 183050710 183050710 G A PDE1A Silent p.S491S 0.32 TCGA-W3-A828-06 2 183641968 183641968 G A DNAJC10 3'UTR 0.47 TCGA-W3-A828-06 2 183702699 183702699 C T FRZB Missense_Mutation p.D280N 0.35 tolerated(0.07) probably_damaging(0.957) TCGA-W3-A828-06 2 187626333 187626333 G A FAM171B Missense_Mutation p.E422K 0.30 deleterious(0.03) benign(0.153) TCGA-W3-A828-06 2 191874601 191874601 C A STAT1 Splice_Site p.X43_splice 0.17 TCGA-W3-A828-06 2 191874602 191874602 C T STAT1 Nonsense_Mutation p.W43* 0.17 TCGA-W3-A828-06 2 198949292 198949292 G A PLCL1 Missense_Mutation p.D351N 0.26 deleterious(0) benign(0.284) TCGA-W3-A828-06 2 201462212 201462212 G A AOX1 Missense_Mutation p.R98K 0.30 tolerated(0.42) benign(0.086) TCGA-W3-A828-06 2 202211313 202211313 C T ALS2CR12 Missense_Mutation p.R107K 0.30 tolerated(0.35) benign(0.008) TCGA-W3-A828-06 2 202400809 202400809 G A ALS2CR11 Missense_Mutation p.P481S 0.34 tolerated(0.26) benign(0.344) TCGA-W3-A828-06 2 204031991 204031991 G A NBEAL1 Missense_Mutation p.E1940K 0.34 deleterious(0.01) possibly_damaging(0.748) TCGA-W3-A828-06 2 205990384 205990384 C T PARD3B Missense_Mutation p.L453F 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 2 207024601 207024601 T A EEF1B2 5'UTR 0.40 TCGA-W3-A828-06 2 21229955 21229955 G A APOB Missense_Mutation p.P3262L 0.38 possibly_damaging(0.844) TCGA-W3-A828-06 2 21231560 21231560 T C APOB Missense_Mutation p.N2727S 0.31 benign(0.007) TCGA-W3-A828-06 2 213914594 213914594 G A IKZF2 Silent p.P139P 0.16 TCGA-W3-A828-06 2 219614736 219614736 C T TTLL4 Missense_Mutation p.H914Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 2 220078866 220078866 G A ABCB6 Nonsense_Mutation p.R477* 0.27 TCGA-W3-A828-06 2 220419394 220419394 G A OBSL1 Nonsense_Mutation p.Q1560* 0.25 TCGA-W3-A828-06 2 220492717 220492717 G A SLC4A3 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-W3-A828-06 2 223507643 223507643 C G FARSB Missense_Mutation p.D66H 0.34 deleterious(0) probably_damaging(0.977) TCGA-W3-A828-06 2 226273622 226273622 C T NYAP2 Missense_Mutation p.S9F 0.16 deleterious(0.01) benign(0.163) TCGA-W3-A828-06 2 227983395 227983395 C T COL4A4 Missense_Mutation p.G152E 0.28 probably_damaging(1) TCGA-W3-A828-06 2 231035399 231035399 T A SP110 Missense_Mutation p.T656S 0.26 tolerated(0.21) possibly_damaging(0.486) TCGA-W3-A828-06 2 231150506 231150506 A G SP140 Missense_Mutation p.K535R 0.26 tolerated(0.12) benign(0.224) TCGA-W3-A828-06 2 231222638 231222638 G T SP140L Nonsense_Mutation p.E76* 0.28 TCGA-W3-A828-06 2 231222640 231222640 G A SP140L Silent p.E76E 0.29 TCGA-W3-A828-06 2 231406039 231406039 G A SP100 Silent p.K785K 0.32 TCGA-W3-A828-06 2 232329110 232329110 G A NCL 5'UTR 0.64 TCGA-W3-A828-06 2 234240350 234240350 G A SAG Silent p.E266E 0.25 TCGA-W3-A828-06 2 238253415 238253415 C T COL6A3 Missense_Mutation p.D2416N 0.28 unknown(0) TCGA-W3-A828-06 2 238419641 238419641 G A MLPH Silent p.K114K 0.29 TCGA-W3-A828-06 2 241418997 241418997 C T ANKMY1 3'UTR 0.21 TCGA-W3-A828-06 2 241418998 241418998 C T ANKMY1 3'UTR 0.20 TCGA-W3-A828-06 2 241812418 241812418 G A AGXT Missense_Mutation p.D183N 0.38 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 2 242004360 242004360 G A SNED1 Silent p.E900E 0.30 TCGA-W3-A828-06 2 242128117 242128117 G A ANO7 Missense_Mutation p.D31N 0.32 deleterious_low_confidence(0.03) benign(0.074) TCGA-W3-A828-06 2 242509652 242509652 G A BOK Silent p.G154G 0.45 TCGA-W3-A828-06 2 242689642 242689642 C T D2HGDH Silent p.F310F 0.31 TCGA-W3-A828-06 2 24494758 24494758 C T ITSN2 Missense_Mutation p.E712K 0.27 tolerated(0.08) unknown(0) TCGA-W3-A828-06 2 25384138 25384138 C T POMC Missense_Mutation p.E206K 0.19 deleterious(0.02) benign(0.285) TCGA-W3-A828-06 2 25469176 25469176 C T DNMT3A Missense_Mutation p.E428K 0.40 tolerated(0.23) benign(0.445) TCGA-W3-A828-06 2 26702485 26702485 G A OTOF Missense_Mutation p.P650L 0.43 tolerated(0.06) benign(0.033) TCGA-W3-A828-06 2 26706362 26706362 G A OTOF Missense_Mutation p.P454S 0.28 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 2 27256968 27256968 G A TMEM214 Missense_Mutation p.R62Q 0.27 tolerated(0.41) possibly_damaging(0.885) TCGA-W3-A828-06 2 27361040 27361040 G A C2orf53 Missense_Mutation p.S53F 0.36 tolerated(0.72) probably_damaging(0.955) TCGA-W3-A828-06 2 27916612 27916612 C T SLC4A1AP Missense_Mutation p.P778S 0.30 deleterious(0) possibly_damaging(0.539) TCGA-W3-A828-06 2 28532834 28532834 T C BRE Intron 0.36 TCGA-W3-A828-06 2 29225548 29225548 G A FAM179A Missense_Mutation p.E192K 0.33 deleterious(0.01) benign(0.285) TCGA-W3-A828-06 2 32750682 32750682 C A BIRC6 Missense_Mutation p.H3969Q 0.41 probably_damaging(0.991) TCGA-W3-A828-06 2 33813498 33813498 G A FAM98A Silent p.V142V 0.23 TCGA-W3-A828-06 2 37471013 37471013 C T NDUFAF7 Missense_Mutation p.P230L 0.21 tolerated(0.13) benign(0.395) TCGA-W3-A828-06 2 38179241 38179241 C T RMDN2 Missense_Mutation p.P295S 0.31 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-W3-A828-06 2 43452482 43452482 T A ZFP36L2 Missense_Mutation p.Y154F 0.29 deleterious(0) probably_damaging(0.973) TCGA-W3-A828-06 2 43798854 43798854 G A THADA Missense_Mutation p.L686F 0.27 deleterious(0.05) possibly_damaging(0.844) TCGA-W3-A828-06 2 44016813 44016813 C T DYNC2LI1 Silent p.T91T 0.28 TCGA-W3-A828-06 2 44445645 44445645 G A PPM1B Missense_Mutation p.S368N 0.29 tolerated(0.86) benign(0.001) TCGA-W3-A828-06 2 44566332 44566332 T C PREPL Missense_Mutation p.D308G 0.28 tolerated(0.46) benign(0.023) TCGA-W3-A828-06 2 44571668 44571668 C T PREPL Missense_Mutation p.D134N 0.31 tolerated(0.6) possibly_damaging(0.565) TCGA-W3-A828-06 2 45169304 45169304 G A SIX3 Missense_Mutation p.D21N 0.31 deleterious_low_confidence(0.02) benign(0.022) TCGA-W3-A828-06 2 48026541 48026541 G A MSH6 Silent p.L473L 0.24 TCGA-W3-A828-06 2 48026542 48026542 G A MSH6 Missense_Mutation p.V474M 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 2 49190018 49190018 C T FSHR Missense_Mutation p.E648K 0.26 tolerated(0.9) benign(0.002) TCGA-W3-A828-06 2 49381597 49381597 G A FSHR 5'UTR 0.47 TCGA-W3-A828-06 2 50149003 50149003 G A NRXN1 3'UTR 0.36 TCGA-W3-A828-06 2 50149377 50149377 C T NRXN1 Missense_Mutation p.R1450Q 0.30 tolerated(0.57) benign(0.096) TCGA-W3-A828-06 2 69092917 69092917 G A BMP10 Missense_Mutation p.A374V 0.37 deleterious(0) benign(0.314) TCGA-W3-A828-06 2 69172600 69172600 T C GKN2 Intron 0.43 TCGA-W3-A828-06 2 70164477 70164477 G A MXD1 Missense_Mutation p.M143I 0.28 tolerated(0.27) benign(0.002) TCGA-W3-A828-06 2 70165333 70165333 C T MXD1 Missense_Mutation p.L195F 0.24 tolerated(0.71) benign(0.197) TCGA-W3-A828-06 2 71576396 71576396 G A ZNF638 Nonsense_Mutation p.W104* 0.28 TCGA-W3-A828-06 2 71840531 71840531 C T DYSF Silent p.I1485I 0.33 TCGA-W3-A828-06 2 71887696 71887696 C T DYSF Missense_Mutation p.P1640S 0.30 deleterious(0) probably_damaging(0.927) TCGA-W3-A828-06 2 73316173 73316173 G A RAB11FIP5 Silent p.F234F 0.36 TCGA-W3-A828-06 2 74140722 74140722 G A ACTG2 Missense_Mutation p.D188N 0.31 tolerated_low_confidence(0.06) benign(0.079) TCGA-W3-A828-06 2 74462315 74462315 G A SLC4A5 Silent p.S782S 0.29 TCGA-W3-A828-06 2 77746383 77746383 G A LRRTM4 Silent p.L204L 0.36 TCGA-W3-A828-06 2 80529439 80529439 C T LRRTM1 Silent p.V502V 0.33 TCGA-W3-A828-06 2 86716474 86716474 C A KDM3A Missense_Mutation p.T1116K 0.33 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 2 89278069 89278069 C T IGKV3-7 Missense_Mutation p.G89E 0.35 deleterious(0.02) possibly_damaging(0.584) TCGA-W3-A828-06 2 89327152 89327152 G A IGKV3-11 Silent p.L10L 0.28 TCGA-W3-A828-06 2 95497781 95497781 C T ANKRD20A8P RNA 0.32 TCGA-W3-A828-06 2 98986444 98986444 C T CNGA3 Silent p.A2A 0.33 TCGA-W3-A828-06 3 100645325 100645325 C T ABI3BP Missense_Mutation p.G34D 0.40 tolerated(0.08) probably_damaging(0.931) TCGA-W3-A828-06 3 10130600 10130600 G A FANCD2 Missense_Mutation p.D1217N 0.24 tolerated(0.12) benign(0.113) TCGA-W3-A828-06 3 109031423 109031423 G A DPPA2 Silent p.V50V 0.44 TCGA-W3-A828-06 3 113172718 113172718 C T SPICE1 Nonsense_Mutation p.W579* 0.29 TCGA-W3-A828-06 3 113377887 113377887 G A KIAA2018 Missense_Mutation p.S881L 0.32 benign(0.036) TCGA-W3-A828-06 3 119120668 119120668 G A ARHGAP31 Splice_Site p.X357_splice 0.28 TCGA-W3-A828-06 3 119133504 119133504 G A ARHGAP31 Missense_Mutation p.E910K 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-W3-A828-06 3 121822448 121822448 G A CD86 Missense_Mutation p.E52K 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-W3-A828-06 3 122278521 122278521 G - PARP9 5'UTR 0.30 TCGA-W3-A828-06 3 123419455 123419455 G A MYLK Missense_Mutation p.R954C 0.27 deleterious(0) benign(0.007) TCGA-W3-A828-06 3 123813744 123813744 G A KALRN Silent p.L20L 0.31 TCGA-W3-A828-06 3 127358168 127358168 C T PODXL2 Silent p.L51L 0.32 TCGA-W3-A828-06 3 12779663 12779663 G A TMEM40 Silent p.L132L 0.39 TCGA-W3-A828-06 3 129120514 129120514 G T EFCAB12 Missense_Mutation p.D547E 0.30 tolerated(0.18) benign(0.021) TCGA-W3-A828-06 3 129120516 129120516 C T EFCAB12 Missense_Mutation p.D547N 0.30 tolerated(0.53) benign(0.013) TCGA-W3-A828-06 3 129225392 129225392 G A IFT122 Missense_Mutation p.D982N 0.32 tolerated(0.37) benign(0.008) TCGA-W3-A828-06 3 130368222 130368222 C A COL6A6 Missense_Mutation p.S1850Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 3 133191387 133191387 C T BFSP2 Silent p.L408L 0.42 TCGA-W3-A828-06 3 133894796 133894796 C T RYK Missense_Mutation p.D466N 0.31 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 3 136057277 136057277 G A STAG1 Missense_Mutation p.R1230W 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-W3-A828-06 3 138186422 138186422 G A ESYT3 Missense_Mutation p.D397N 0.38 deleterious(0.02) benign(0.388) TCGA-W3-A828-06 3 13860738 13860738 G A WNT7A Silent p.F251F 0.23 TCGA-W3-A828-06 3 139171877 139171877 C T RBP2 3'UTR 0.50 TCGA-W3-A828-06 3 139171878 139171878 C T RBP2 3'UTR 0.53 TCGA-W3-A828-06 3 1414608 1414608 T A CNTN6 Missense_Mutation p.S585R 0.33 tolerated(0.1) benign(0.012) TCGA-W3-A828-06 3 14523244 14523244 C T SLC6A6 Silent p.P539P 0.21 TCGA-W3-A828-06 3 149093474 149093474 C T TM4SF1 Missense_Mutation p.R87Q 0.22 tolerated(0.06) benign(0.355) TCGA-W3-A828-06 3 15100982 15100982 C T MRPS25 Silent p.R45R 0.25 TCGA-W3-A828-06 3 154861247 154861247 A G MME Missense_Mutation p.T402A 0.27 tolerated(0.11) benign(0.036) TCGA-W3-A828-06 3 15493034 15493034 C T COLQ 3'UTR 0.33 TCGA-W3-A828-06 3 155199922 155199922 C T PLCH1 Missense_Mutation p.G1306E 0.34 tolerated_low_confidence(0.42) benign(0.003) TCGA-W3-A828-06 3 155485368 155485368 G A C3orf33 Missense_Mutation p.S95F 0.23 deleterious(0.05) benign(0.384) TCGA-W3-A828-06 3 16327891 16327891 C T OXNAD1 Missense_Mutation p.P76S 0.33 tolerated(0.19) benign(0.096) TCGA-W3-A828-06 3 164906549 164906549 G T SLITRK3 Missense_Mutation p.S690R 0.18 tolerated(0.25) benign(0.001) TCGA-W3-A828-06 3 167761244 167761244 C T GOLIM4 Missense_Mutation p.S147N 0.27 tolerated(0.24) benign(0.036) TCGA-W3-A828-06 3 167813085 167813085 G A GOLIM4 5'UTR 0.19 TCGA-W3-A828-06 3 169587561 169587561 C T LRRC31 Missense_Mutation p.G12E 0.44 tolerated(0.37) benign(0.002) TCGA-W3-A828-06 3 170219086 170219086 G A SLC7A14 Missense_Mutation p.S118F 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 3 17053494 17053494 G A PLCL2 Missense_Mutation p.G760R 0.42 deleterious(0) probably_damaging(0.983) TCGA-W3-A828-06 3 17053495 17053495 G A PLCL2 Missense_Mutation p.G760E 0.42 deleterious(0) probably_damaging(0.988) TCGA-W3-A828-06 3 173997039 173997039 A C NLGN1 Silent p.S416S 0.10 TCGA-W3-A828-06 3 179525590 179525590 C T PEX5L Silent p.A516A 0.39 TCGA-W3-A828-06 3 183006937 183006937 C T MCF2L2 Missense_Mutation p.E583K 0.24 tolerated(0.7) benign(0.003) TCGA-W3-A828-06 3 183503981 183503981 C T YEATS2 Silent p.T935T 0.33 TCGA-W3-A828-06 3 184104357 184104357 G A CHRD Silent p.G670G 0.44 TCGA-W3-A828-06 3 186917843 186917843 C T RTP1 Silent p.F259F 0.35 TCGA-W3-A828-06 3 189507559 189507559 G A TP63 Intron 0.31 TCGA-W3-A828-06 3 190030782 190030782 G A CLDN1 Silent p.L89L 0.33 TCGA-W3-A828-06 3 191861893 191861893 G A FGF12 Silent p.L213L 0.19 TCGA-W3-A828-06 3 194118479 194118479 G A GP5 Missense_Mutation p.S178L 0.27 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 3 194126804 194126804 G A ATP13A3 Silent p.A1175A 0.38 TCGA-W3-A828-06 3 19431972 19431972 G A KCNH8 Splice_Site p.X271_splice 0.46 TCGA-W3-A828-06 3 194362818 194362818 G A LSG1 Silent p.L652L 0.32 TCGA-W3-A828-06 3 19491687 19491687 G A KCNH8 Missense_Mutation p.D489N 0.23 deleterious(0) benign(0.345) TCGA-W3-A828-06 3 195012523 195012523 A G ACAP2 Missense_Mutation p.F659L 0.14 deleterious(0.05) possibly_damaging(0.744) TCGA-W3-A828-06 3 195300824 195300824 C T APOD Missense_Mutation p.E48K 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 3 197703506 197703506 G A LMLN Missense_Mutation p.D157N 0.18 tolerated(0.21) probably_damaging(0.988) TCGA-W3-A828-06 3 197765461 197765461 C T LMLN Silent p.L668L 0.17 TCGA-W3-A828-06 3 30032594 30032594 C T RBMS3 Missense_Mutation p.P401S 0.22 tolerated(0.14) benign(0.02) TCGA-W3-A828-06 3 3078899 3078899 C T CNTN4 Missense_Mutation p.T660I 0.24 deleterious(0) probably_damaging(0.968) TCGA-W3-A828-06 3 3078900 3078900 C T CNTN4 Silent p.T660T 0.24 TCGA-W3-A828-06 3 32030670 32030670 C T ZNF860 Silent p.F33F 0.28 TCGA-W3-A828-06 3 32411565 32411566 - T CMTM8 3'UTR 0.13 TCGA-W3-A828-06 3 32931965 32931965 G A TRIM71 Silent p.E423E 0.32 TCGA-W3-A828-06 3 37368920 37368920 C T GOLGA4 Missense_Mutation p.T1870I 0.31 benign(0.059) TCGA-W3-A828-06 3 38743357 38743357 A G SCN10A Missense_Mutation p.F1544L 0.26 tolerated(0.26) benign(0.004) TCGA-W3-A828-06 3 38835499 38835499 C T SCN10A Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-W3-A828-06 3 38950496 38950496 C T SCN11A Missense_Mutation p.E431K 0.29 tolerated(0.43) probably_damaging(0.998) TCGA-W3-A828-06 3 39227381 39227381 C T XIRP1 Missense_Mutation p.G1186S 0.19 tolerated(0.23) benign(0.007) TCGA-W3-A828-06 3 39229644 39229644 C T XIRP1 Silent p.R431R 0.34 TCGA-W3-A828-06 3 39307451 39307451 G A CX3CR1 Nonsense_Mutation p.Q216* 0.28 TCGA-W3-A828-06 3 40211479 40211479 G A MYRIP Silent p.V256V 0.30 TCGA-W3-A828-06 3 40574183 40574183 C T ZNF621 Nonsense_Mutation p.Q308* 0.20 TCGA-W3-A828-06 3 44490190 44490190 G A ZNF445 Nonsense_Mutation p.Q325* 0.24 TCGA-W3-A828-06 3 45636451 45636451 G T LIMD1 Missense_Mutation p.G27V 0.36 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 3 47385500 47385500 C T KLHL18 3'UTR 0.47 TCGA-W3-A828-06 3 49044905 49044905 C T WDR6 Missense_Mutation p.S44L 0.42 deleterious(0) possibly_damaging(0.673) TCGA-W3-A828-06 3 49162528 49162528 C T LAMB2 Missense_Mutation p.G932D 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-W3-A828-06 3 49162529 49162529 C T LAMB2 Missense_Mutation p.G932S 0.31 deleterious(0.04) possibly_damaging(0.895) TCGA-W3-A828-06 3 49456557 49456557 G A AMT Missense_Mutation p.H242Y 0.44 tolerated(0.05) benign(0.002) TCGA-W3-A828-06 3 49692736 49692736 C T BSN Missense_Mutation p.T1916I 0.25 unknown(0) TCGA-W3-A828-06 3 50137509 50137509 A T RBM5 Intron 0.44 TCGA-W3-A828-06 3 50220978 50220978 C T SEMA3F Missense_Mutation p.P405L 0.38 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 3 50311890 50311890 G A LSMEM2 5'Flank 0.25 TCGA-W3-A828-06 3 51102024 51102024 A C DOCK3 Missense_Mutation p.N154T 0.31 deleterious(0) probably_damaging(0.991) TCGA-W3-A828-06 3 5214354 5214354 C T ARL8B Missense_Mutation p.R101C 0.28 tolerated(0.09) possibly_damaging(0.617) TCGA-W3-A828-06 3 52236750 52236750 G T ALAS1 Nonsense_Mutation p.E143* 0.36 TCGA-W3-A828-06 3 52236751 52236751 G T ALAS1 Splice_Site p.X143_splice 0.35 TCGA-W3-A828-06 3 52257203 52257203 G A TLR9 Missense_Mutation p.R531C 0.34 deleterious(0) probably_damaging(0.977) TCGA-W3-A828-06 3 52257204 52257204 G A TLR9 Silent p.F530F 0.33 TCGA-W3-A828-06 3 52379680 52379680 C T DNAH1 Silent p.H538H 0.29 TCGA-W3-A828-06 3 52379681 52379681 C T DNAH1 Silent p.L539L 0.28 TCGA-W3-A828-06 3 5243520 5243520 G A EDEM1 Missense_Mutation p.D257N 0.24 tolerated(0.38) benign(0.085) TCGA-W3-A828-06 3 5244719 5244719 C T EDEM1 Silent p.L309L 0.37 TCGA-W3-A828-06 3 52555483 52555483 C T STAB1 Silent p.A2005A 0.22 TCGA-W3-A828-06 3 52557151 52557151 G A STAB1 Splice_Site p.X2340_splice 0.27 TCGA-W3-A828-06 3 52821003 52821003 G A ITIH1 Silent p.Q592Q 0.28 TCGA-W3-A828-06 3 69231812 69231812 C T FRMD4B Missense_Mutation p.G659E 0.33 tolerated(0.25) probably_damaging(1) TCGA-W3-A828-06 3 87302905 87302905 C T CHMP2B Missense_Mutation p.S192F 0.26 deleterious(0.01) benign(0.265) TCGA-W3-A828-06 3 9027156 9027156 C T SRGAP3 3'UTR 0.39 TCGA-W3-A828-06 3 93595998 93595998 C A PROS1 Missense_Mutation p.R561L 0.26 tolerated(0.34) benign(0.088) TCGA-W3-A828-06 3 9547793 9547793 G A LHFPL4 Silent p.S167S 0.38 TCGA-W3-A828-06 3 9547794 9547794 G A LHFPL4 Missense_Mutation p.S167F 0.39 deleterious(0) benign(0.285) TCGA-W3-A828-06 3 97251309 97251309 G A EPHA6 Missense_Mutation p.D770N 0.25 deleterious(0) possibly_damaging(0.894) TCGA-W3-A828-06 3 97806940 97806940 G A OR5AC2 Silent p.R308R 0.31 TCGA-W3-A828-06 3 97984054 97984054 G A OR5H6 Missense_Mutation p.R309K 0.24 deleterious(0.01) possibly_damaging(0.45) TCGA-W3-A828-06 3 98110166 98110166 C T OR5K3 Silent p.I219I 0.38 TCGA-W3-A828-06 3 99567240 99567240 C T FILIP1L Missense_Mutation p.G1094S 0.27 tolerated(0.87) benign(0.001) TCGA-W3-A828-06 3 99567241 99567241 T A FILIP1L Missense_Mutation p.Q1093H 0.27 tolerated(0.22) benign(0.02) TCGA-W3-A828-06 4 100125346 100125346 C T ADH6 3'UTR 0.32 TCGA-W3-A828-06 4 102965053 102965053 C T BANK1 Missense_Mutation p.P653L 0.31 deleterious(0.05) possibly_damaging(0.563) TCGA-W3-A828-06 4 106880283 106880283 G A NPNT Missense_Mutation p.G479S 0.31 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 4 108829737 108829737 C T SGMS2 Silent p.F248F 0.27 TCGA-W3-A828-06 4 109782128 109782128 C T COL25A1 Splice_Site p.X400_splice 0.29 TCGA-W3-A828-06 4 1161312 1161312 G A SPON2 Missense_Mutation p.P315L 0.30 deleterious(0) possibly_damaging(0.591) TCGA-W3-A828-06 4 118975475 118975475 T C NDST3 Missense_Mutation p.L137S 0.21 tolerated(0.24) benign(0.012) TCGA-W3-A828-06 4 118975702 118975702 G A NDST3 Missense_Mutation p.G213S 0.24 deleterious(0.03) benign(0.082) TCGA-W3-A828-06 4 119026234 119026234 G A NDST3 Missense_Mutation p.G348E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 4 121774631 121774631 C T PRDM5 Nonsense_Mutation p.W81* 0.30 TCGA-W3-A828-06 4 123176436 123176436 A T KIAA1109 Missense_Mutation p.M2126L 0.34 benign(0.029) TCGA-W3-A828-06 4 126315108 126315108 G A FAT4 Intron 0.31 TCGA-W3-A828-06 4 126329724 126329724 A T FAT4 Missense_Mutation p.N1899Y 0.32 probably_damaging(0.992) TCGA-W3-A828-06 4 126336725 126336725 C T FAT4 Missense_Mutation p.R2203W 0.27 probably_damaging(0.998) TCGA-W3-A828-06 4 126412428 126412428 G A FAT4 Silent p.E4817E 0.19 TCGA-W3-A828-06 4 126412429 126412429 G A FAT4 Missense_Mutation p.D4818N 0.21 benign(0.42) TCGA-W3-A828-06 4 13602670 13602670 C A BOD1L1 Missense_Mutation p.G1952W 0.35 probably_damaging(0.999) TCGA-W3-A828-06 4 15067992 15067992 C T CPEB2 Silent p.F1031F 0.44 TCGA-W3-A828-06 4 153690756 153690756 G A TIGD4 Silent p.L467L 0.39 TCGA-W3-A828-06 4 153692188 153692188 C T TIGD4 5'UTR 0.43 TCGA-W3-A828-06 4 15559112 15559112 T G CC2D2A Missense_Mutation p.I937M 0.16 deleterious(0) probably_damaging(0.995) TCGA-W3-A828-06 4 158256887 158256887 G A GRIA2 Missense_Mutation p.G444D 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 4 15937744 15937744 C T FGFBP1 Missense_Mutation p.R171K 0.34 tolerated(0.86) benign(0.004) TCGA-W3-A828-06 4 162954788 162954788 G A FSTL5 Missense_Mutation p.S50L 0.47 tolerated_low_confidence(0.28) probably_damaging(0.942) TCGA-W3-A828-06 4 177098765 177098765 C T WDR17 Missense_Mutation p.S1270F 0.35 deleterious(0) possibly_damaging(0.555) TCGA-W3-A828-06 4 185012426 185012426 C T ENPP6 Silent p.R409R 0.53 TCGA-W3-A828-06 4 186379706 186379706 C T CCDC110 Missense_Mutation p.E679K 0.45 deleterious(0) probably_damaging(0.975) TCGA-W3-A828-06 4 186544264 186544264 G A SORBS2 Silent p.P869P 0.47 TCGA-W3-A828-06 4 22749467 22749467 C T GBA3 Nonsense_Mutation p.Q279* 0.33 TCGA-W3-A828-06 4 22749469 22749469 A G GBA3 Silent p.Q279Q 0.32 TCGA-W3-A828-06 4 23833232 23833232 G A PPARGC1A Missense_Mutation p.S126F 0.33 deleterious(0.01) possibly_damaging(0.629) TCGA-W3-A828-06 4 26750071 26750071 C T TBC1D19 Missense_Mutation p.S453F 0.39 deleterious(0) probably_damaging(0.994) TCGA-W3-A828-06 4 3422442 3422442 C T RGS12 Silent p.D945D 0.24 TCGA-W3-A828-06 4 3951272 3951272 T A FAM86EP Intron 0.40 TCGA-W3-A828-06 4 42895373 42895373 G A GRXCR1 Silent p.K30K 0.31 TCGA-W3-A828-06 4 42895374 42895374 G A GRXCR1 Missense_Mutation p.E31K 0.31 tolerated(0.08) probably_damaging(0.993) TCGA-W3-A828-06 4 42965069 42965069 G A GRXCR1 Missense_Mutation p.G182E 0.27 tolerated(0.14) probably_damaging(1) TCGA-W3-A828-06 4 44450051 44450051 C T KCTD8 Missense_Mutation p.D164N 0.32 deleterious(0) probably_damaging(0.987) TCGA-W3-A828-06 4 44631460 44631460 G A YIPF7 Missense_Mutation p.P153L 0.44 deleterious(0) probably_damaging(0.965) TCGA-W3-A828-06 4 48073633 48073633 A G TXK Silent p.N472N 0.33 TCGA-W3-A828-06 4 48625177 48625177 G A FRYL Missense_Mutation p.S47F 0.19 deleterious(0) probably_damaging(0.971) TCGA-W3-A828-06 4 53278 53278 G A ZNF595 5'UTR 0.06 TCGA-W3-A828-06 4 53494270 53494270 G A USP46 Missense_Mutation p.R60W 0.38 deleterious(0.02) probably_damaging(0.948) TCGA-W3-A828-06 4 57179394 57179394 G A KIAA1211 Missense_Mutation p.R129K 0.35 deleterious(0.04) probably_damaging(0.995) TCGA-W3-A828-06 4 69100328 69100328 C T TMPRSS11B Missense_Mutation p.G108S 0.37 tolerated(0.3) probably_damaging(0.977) TCGA-W3-A828-06 4 69343132 69343132 A G TMPRSS11E Missense_Mutation p.I251M 0.29 deleterious(0.01) possibly_damaging(0.611) TCGA-W3-A828-06 4 70346372 70346372 T G UGT2B4 Missense_Mutation p.K523Q 0.33 deleterious(0.01) possibly_damaging(0.853) TCGA-W3-A828-06 4 70715276 70715276 G A SULT1E1 Silent p.I125I 0.20 TCGA-W3-A828-06 4 71099791 71099791 C T FDCSP Missense_Mutation p.P49S 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.803) TCGA-W3-A828-06 4 71510086 71510086 G A ENAM Silent p.K981K 0.26 TCGA-W3-A828-06 4 72338746 72338746 C T SLC4A4 Intron 0.22 TCGA-W3-A828-06 4 74303999 74303999 G A AFP Silent p.Q82Q 0.31 TCGA-W3-A828-06 4 76523331 76523331 G A CDKL2 Missense_Mutation p.S317F 0.26 tolerated(0.1) benign(0.008) TCGA-W3-A828-06 4 76570762 76570762 G A G3BP2 Missense_Mutation p.P434L 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-W3-A828-06 4 76573850 76573850 C T G3BP2 Missense_Mutation p.G301S 0.30 tolerated(0.64) benign(0.101) TCGA-W3-A828-06 4 77247101 77247101 G T CCDC158 Missense_Mutation p.H1022Q 0.24 deleterious(0) probably_damaging(0.974) TCGA-W3-A828-06 4 77247102 77247102 T A CCDC158 Missense_Mutation p.H1022L 0.25 deleterious(0) probably_damaging(0.964) TCGA-W3-A828-06 4 77917590 77917590 C T SEPT11 Nonsense_Mutation p.R14* 0.41 TCGA-W3-A828-06 4 79429948 79429948 C T FRAS1 Missense_Mutation p.P3190S 0.26 probably_damaging(0.999) TCGA-W3-A828-06 4 80327757 80327757 C T GK2 Missense_Mutation p.G533E 0.30 deleterious(0) possibly_damaging(0.796) TCGA-W3-A828-06 4 81121416 81121416 A G PRDM8 Missense_Mutation p.K61R 0.39 deleterious(0) benign(0.099) TCGA-W3-A828-06 4 83351979 83351979 G A ENOPH1 5'UTR 0.31 TCGA-W3-A828-06 4 85678217 85678217 G A WDFY3 Silent p.F1762F 0.25 TCGA-W3-A828-06 4 88733067 88733067 C T IBSP 3'UTR 0.36 TCGA-W3-A828-06 4 88989209 88989209 C T PKD2 Nonsense_Mutation p.Q840* 0.31 TCGA-W3-A828-06 4 94145901 94145901 G A GRID2 Missense_Mutation p.R367H 0.24 tolerated(0.54) benign(0.075) TCGA-W3-A828-06 5 100191920 100191920 G A ST8SIA4 Silent p.F228F 0.41 TCGA-W3-A828-06 5 101585422 101585422 G A SLCO4C1 Missense_Mutation p.P514S 0.28 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 5 101834473 101834473 G A SLCO6A1 Missense_Mutation p.R26W 0.33 tolerated(0.06) possibly_damaging(0.853) TCGA-W3-A828-06 5 102343227 102343227 T C PAM Missense_Mutation p.L694P 0.30 tolerated(0.06) benign(0.003) TCGA-W3-A828-06 5 10992678 10992678 G A CTNND2 Missense_Mutation p.P1066S 0.31 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 5 113831771 113831771 G A KCNN2 Missense_Mutation p.M544I 0.32 tolerated(1) benign(0) TCGA-W3-A828-06 5 115298499 115298499 T C AQPEP Missense_Mutation p.L62P 0.59 tolerated(0.28) benign(0) TCGA-W3-A828-06 5 127599165 127599165 C T FBN2 Missense_Mutation p.G2715E 0.41 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 5 127599166 127599166 C T FBN2 Missense_Mutation p.G2715R 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 5 1318435 1318435 C G CLPTM1L 3'UTR 0.38 TCGA-W3-A828-06 5 134782806 134782806 G A TIFAB 3'UTR 0.71 TCGA-W3-A828-06 5 137426946 137426946 G A WNT8A 3'UTR 0.59 TCGA-W3-A828-06 5 13792186 13792186 G A DNAH5 Missense_Mutation p.H2789Y 0.36 benign(0.415) TCGA-W3-A828-06 5 13820577 13820577 G A DNAH5 Missense_Mutation p.P2240L 0.40 possibly_damaging(0.713) TCGA-W3-A828-06 5 13830774 13830774 C T DNAH5 Missense_Mutation p.G1998E 0.44 probably_damaging(0.982) TCGA-W3-A828-06 5 138857032 138857032 T C TMEM173 Silent p.Q276Q 0.07 TCGA-W3-A828-06 5 139189296 139189296 G A PSD2 Missense_Mutation p.E91K 0.44 deleterious_low_confidence(0) benign(0.146) TCGA-W3-A828-06 5 139231298 139231298 C T NRG2 Missense_Mutation p.A555T 0.38 deleterious(0.02) probably_damaging(1) TCGA-W3-A828-06 5 139231299 139231299 C T NRG2 Silent p.E554E 0.34 TCGA-W3-A828-06 5 139865239 139865239 G A ANKHD1 Silent p.L688L 0.54 TCGA-W3-A828-06 5 140188716 140188716 G A PCDHA4 Silent p.L648L 0.34 TCGA-W3-A828-06 5 140188749 140188749 G C PCDHA4 Silent p.L659L 0.39 TCGA-W3-A828-06 5 140264173 140264173 C T PCDHA13 Missense_Mutation p.P774S 0.30 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-W3-A828-06 5 140306568 140306568 G A PCDHAC1 Missense_Mutation p.E31K 0.39 tolerated(0.11) benign(0.162) TCGA-W3-A828-06 5 140431957 140431957 T C PCDHB1 Missense_Mutation p.V301A 0.37 deleterious(0) benign(0.371) TCGA-W3-A828-06 5 140475134 140475134 C T PCDHB2 Missense_Mutation p.P254S 0.35 tolerated_low_confidence(0.06) benign(0.158) TCGA-W3-A828-06 5 140564527 140564527 G A PCDHB16 3'UTR 0.35 TCGA-W3-A828-06 5 140588490 140588490 G A PCDHB12 Missense_Mutation p.G4E 0.52 tolerated_low_confidence(0.28) benign(0.003) TCGA-W3-A828-06 5 140604658 140604658 C T PCDHB14 Silent p.F527F 0.42 TCGA-W3-A828-06 5 140626892 140626892 G A PCDHB15 Silent p.P582P 0.55 TCGA-W3-A828-06 5 140683153 140683153 T A SLC25A2 Nonsense_Mutation p.K94* 0.55 TCGA-W3-A828-06 5 140731558 140731558 C T PCDHGB1 Silent p.A577A 0.50 TCGA-W3-A828-06 5 140736152 140736152 C T PCDHGA4 Missense_Mutation p.P462L 0.47 tolerated_low_confidence(0.12) benign(0.279) TCGA-W3-A828-06 5 140788108 140788108 T C PCDHGB6 Silent p.P113P 0.52 TCGA-W3-A828-06 5 140866038 140866038 C T PCDHGC4 Missense_Mutation p.P433L 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 5 150723796 150723796 C T SLC36A2 Missense_Mutation p.G66D 0.47 deleterious(0) probably_damaging(0.939) TCGA-W3-A828-06 5 150867653 150867653 C T SLC36A1 Silent p.T423T 0.65 TCGA-W3-A828-06 5 153144095 153144095 G A GRIA1 Missense_Mutation p.R652K 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-W3-A828-06 5 153855469 153855469 T C HAND1 Missense_Mutation p.Q182R 0.28 tolerated(0.49) benign(0.02) TCGA-W3-A828-06 5 154299591 154299591 G A GEMIN5 Missense_Mutation p.P512L 0.27 deleterious(0) benign(0.418) TCGA-W3-A828-06 5 154395667 154395667 G A KIF4B Missense_Mutation p.E750K 0.28 deleterious(0) possibly_damaging(0.858) TCGA-W3-A828-06 5 156349119 156349119 G A TIMD4 Missense_Mutation p.L335F 0.28 tolerated(0.5) benign(0.007) TCGA-W3-A828-06 5 156590322 156590322 G A FAM71B Silent p.I318I 0.35 TCGA-W3-A828-06 5 156770492 156770492 G A FNDC9 Missense_Mutation p.S18L 0.34 deleterious(0.02) possibly_damaging(0.736) TCGA-W3-A828-06 5 159398896 159398896 C T ADRA1B Silent p.F320F 0.31 TCGA-W3-A828-06 5 160113098 160113098 C T ATP10B Missense_Mutation p.R153Q 0.26 tolerated(0.33) benign(0.004) TCGA-W3-A828-06 5 167891938 167891938 C T WWC1 Missense_Mutation p.R1047C 0.24 deleterious(0.04) benign(0.233) TCGA-W3-A828-06 5 169689855 169689855 G A LCP2 Missense_Mutation p.P270L 0.13 tolerated(0.26) benign(0.002) TCGA-W3-A828-06 5 170232728 170232728 G A GABRP Missense_Mutation p.D184N 0.32 tolerated(0.58) probably_damaging(0.966) TCGA-W3-A828-06 5 171785841 171785841 G A SH3PXD2B Silent p.V201V 0.29 TCGA-W3-A828-06 5 175921008 175921008 C T FAF2 Silent p.N164N 0.23 TCGA-W3-A828-06 5 175921010 175921010 A G FAF2 Missense_Mutation p.D165G 0.23 deleterious(0) probably_damaging(0.94) TCGA-W3-A828-06 5 176004745 176004745 C T CDHR2 Silent p.V486V 0.21 TCGA-W3-A828-06 5 176306404 176306404 C T UNC5A Missense_Mutation p.R760W 0.36 deleterious(0) probably_damaging(0.994) TCGA-W3-A828-06 5 176939793 176939793 G A DDX41 Missense_Mutation p.H463Y 0.25 deleterious(0) probably_damaging(0.965) TCGA-W3-A828-06 5 176958409 176958409 G A FAM193B Intron 0.35 TCGA-W3-A828-06 5 177035571 177035571 G A B4GALT7 Nonsense_Mutation p.W224* 0.32 TCGA-W3-A828-06 5 178139249 178139249 G A ZNF354A Missense_Mutation p.H544Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 5 178369764 178369764 C T ZNF454 5'UTR 0.38 TCGA-W3-A828-06 5 178505848 178505848 G A ZNF354C Missense_Mutation p.E139K 0.28 tolerated(0.73) benign(0.016) TCGA-W3-A828-06 5 180218967 180218967 G A MGAT1 Silent p.N335N 0.28 TCGA-W3-A828-06 5 233761 233761 G A SDHA Splice_Site p.X355_splice 0.33 TCGA-W3-A828-06 5 23527695 23527695 T A PRDM9 Missense_Mutation p.V833D 0.44 deleterious(0.02) possibly_damaging(0.836) TCGA-W3-A828-06 5 31323130 31323130 C T CDH6 Silent p.A696A 0.34 TCGA-W3-A828-06 5 33954602 33954602 C T SLC45A2 Missense_Mutation p.R299K 0.39 tolerated(0.56) benign(0.006) TCGA-W3-A828-06 5 35954499 35954499 G A UGT3A1 Silent p.I459I 0.29 TCGA-W3-A828-06 5 38407021 38407021 G A EGFLAM Missense_Mutation p.R307K 0.36 tolerated(0.22) benign(0.131) TCGA-W3-A828-06 5 38407022 38407022 G A EGFLAM Silent p.R307R 0.35 TCGA-W3-A828-06 5 40843488 40843488 A T CARD6 Missense_Mutation p.E173V 0.36 deleterious(0.01) benign(0.05) TCGA-W3-A828-06 5 40945392 40945392 G A C7 Silent p.R220R 0.18 TCGA-W3-A828-06 5 41058273 41058273 C T MROH2B Silent p.T216T 0.27 TCGA-W3-A828-06 5 41065470 41065470 G A MROH2B Silent p.F108F 0.32 TCGA-W3-A828-06 5 5239950 5239950 C T ADAMTS16 Missense_Mutation p.S812L 0.37 deleterious(0) benign(0.426) TCGA-W3-A828-06 5 52781606 52781606 A C FST Intron 0.35 TCGA-W3-A828-06 5 54320153 54320153 G A GZMK Translation_Start_Site p.M1? 0.33 deleterious(0.01) probably_damaging(0.968) TCGA-W3-A828-06 5 55110757 55110757 G A DDX4 Missense_Mutation p.A582T 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 5 63890555 63890555 G A RGS7BP Missense_Mutation p.G161E 0.34 tolerated_low_confidence(1) unknown(0) TCGA-W3-A828-06 5 70766290 70766290 C T BDP1 Missense_Mutation p.P330S 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 5 70766291 70766291 C T BDP1 Missense_Mutation p.P330L 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 5 72311459 72311459 C T FCHO2 Nonsense_Mutation p.Q203* 0.23 TCGA-W3-A828-06 5 73183452 73183452 A T ARHGEF28 Missense_Mutation p.D1112V 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 5 74848326 74848326 G A POLK Silent p.K55K 0.35 TCGA-W3-A828-06 5 75893337 75893337 G A IQGAP2 Silent p.K327K 0.38 TCGA-W3-A828-06 5 75969414 75969414 C T IQGAP2 Missense_Mutation p.P1070L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 5 76028884 76028884 C T F2R Silent p.F278F 0.33 TCGA-W3-A828-06 5 76173582 76173582 C T S100Z Silent p.F75F 0.38 TCGA-W3-A828-06 5 76646919 76646919 G A PDE8B Silent p.R349R 0.29 TCGA-W3-A828-06 5 79026177 79026177 A G CMYA5 Missense_Mutation p.E530G 0.22 benign(0) TCGA-W3-A828-06 5 79368023 79368023 C T THBS4 Intron 0.41 TCGA-W3-A828-06 5 82808047 82808047 G A VCAN Missense_Mutation p.D292N 0.20 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 5 82832811 82832811 C A VCAN Intron 0.23 TCGA-W3-A828-06 5 82832825 82832825 G A VCAN Splice_Site p.X1335_splice 0.20 TCGA-W3-A828-06 5 89981719 89981719 C T GPR98 Missense_Mutation p.H2133Y 0.35 probably_damaging(0.932) TCGA-W3-A828-06 5 89990046 89990046 T G GPR98 Silent p.S2491S 0.30 TCGA-W3-A828-06 5 90008191 90008191 C T GPR98 Nonsense_Mutation p.Q3044* 0.36 TCGA-W3-A828-06 5 90012415 90012415 G A GPR98 Missense_Mutation p.E3106K 0.18 possibly_damaging(0.899) TCGA-W3-A828-06 5 90106814 90106814 G A GPR98 Missense_Mutation p.R5246Q 0.37 possibly_damaging(0.602) TCGA-W3-A828-06 5 96228069 96228069 A C ERAP2 Missense_Mutation p.E346A 0.33 deleterious(0) probably_damaging(0.985) TCGA-W3-A828-06 5 96228070 96228070 G A ERAP2 Silent p.E346E 0.34 TCGA-W3-A828-06 6 100395764 100395764 A G MCHR2 Missense_Mutation p.L89P 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 6 106554931 106554931 G A PRDM1 Missense_Mutation p.R683Q 0.33 deleterious(0.05) possibly_damaging(0.65) TCGA-W3-A828-06 6 108041771 108041771 G A SCML4 Intron 0.22 TCGA-W3-A828-06 6 109871479 109871479 C T AK9 Silent p.K926K 0.39 TCGA-W3-A828-06 6 110746097 110746097 C G SLC22A16 Missense_Mutation p.R571S 0.30 tolerated(0.36) benign(0.002) TCGA-W3-A828-06 6 111136365 111136365 G A CDK19 5'UTR 0.25 TCGA-W3-A828-06 6 111136366 111136366 G A CDK19 5'UTR 0.25 TCGA-W3-A828-06 6 117128173 117128173 G A GPRC6A Missense_Mutation p.A232V 0.32 tolerated(0.1) benign(0.303) TCGA-W3-A828-06 6 117631384 117631384 C T ROS1 Silent p.V2098V 0.23 TCGA-W3-A828-06 6 118887466 118887466 T A CEP85L Silent p.S85S 0.32 TCGA-W3-A828-06 6 121624775 121624775 G TA TBC1D32 Frame_Shift_Ins p.W359Vfs*7 0.18 TCGA-W3-A828-06 6 128134056 128134056 C T THEMIS Missense_Mutation p.R577K 0.29 tolerated(0.41) benign(0.006) TCGA-W3-A828-06 6 128316637 128316637 G A PTPRK Silent p.S938S 0.24 TCGA-W3-A828-06 6 130374070 130374070 G A L3MBTL3 Silent p.K172K 0.27 TCGA-W3-A828-06 6 132966342 132966342 G A TAAR1 Silent p.F267F 0.27 TCGA-W3-A828-06 6 13307970 13307970 G C TBC1D7 Missense_Mutation p.A176G 0.27 tolerated(0.2) benign(0.004) TCGA-W3-A828-06 6 136599792 136599792 C T BCLAF1 Missense_Mutation p.R76K 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-W3-A828-06 6 136681901 136681901 C T MAP7 Silent p.E601E 0.32 TCGA-W3-A828-06 6 136686873 136686873 C T MAP7 Missense_Mutation p.A447T 0.36 tolerated(0.31) benign(0.066) TCGA-W3-A828-06 6 137019741 137019741 A C MAP3K5 Missense_Mutation p.M231R 0.37 tolerated(0.84) possibly_damaging(0.762) TCGA-W3-A828-06 6 138655162 138655162 A T KIAA1244 Missense_Mutation p.N1727Y 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-W3-A828-06 6 139363907 139363907 A G ABRACL Missense_Mutation p.K38R 0.33 tolerated(1) benign(0.001) TCGA-W3-A828-06 6 13977775 13977775 C T RNF182 Missense_Mutation p.P142L 0.35 tolerated(0.28) benign(0.007) TCGA-W3-A828-06 6 146216033 146216033 G A SHPRH Silent p.L1532L 0.31 TCGA-W3-A828-06 6 146256204 146256204 C T SHPRH Silent p.Q943Q 0.39 TCGA-W3-A828-06 6 151152103 151152103 C T PLEKHG1 Missense_Mutation p.P619L 0.30 tolerated(0.08) benign(0.004) TCGA-W3-A828-06 6 151672766 151672766 G A AKAP12 Silent p.Q1080Q 0.34 TCGA-W3-A828-06 6 151686607 151686607 G A ZBTB2 3'UTR 0.33 TCGA-W3-A828-06 6 151917521 151917521 C T CCDC170 Missense_Mutation p.L507F 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A828-06 6 152456331 152456331 G A SYNE1 Silent p.L8566L 0.25 TCGA-W3-A828-06 6 158534495 158534495 G A SERAC1 Missense_Mutation p.P605L 0.29 deleterious(0) benign(0.33) TCGA-W3-A828-06 6 159457821 159457821 G A TAGAP Missense_Mutation p.R412C 0.32 tolerated(0.21) benign(0.001) TCGA-W3-A828-06 6 159653246 159653246 C T FNDC1 Missense_Mutation p.P568S 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-W3-A828-06 6 160500807 160500807 C T IGF2R Missense_Mutation p.R1892C 0.20 tolerated(0.08) benign(0.32) TCGA-W3-A828-06 6 161491698 161491698 C T MAP3K4 Missense_Mutation p.P589L 0.28 deleterious(0.04) benign(0.01) TCGA-W3-A828-06 6 16307005 16307005 A G ATXN1 Missense_Mutation p.L668P 0.27 deleterious(0) probably_damaging(0.966) TCGA-W3-A828-06 6 166571697 166571697 C T T 3'UTR 0.35 TCGA-W3-A828-06 6 166952222 166952222 G A RPS6KA2 Silent p.G58G 0.28 TCGA-W3-A828-06 6 1726691 1726691 G A GMDS Missense_Mutation p.H316Y 0.25 tolerated_low_confidence(0.06) benign(0.436) TCGA-W3-A828-06 6 17421861 17421861 C T CAP2 Silent p.S25S 0.26 TCGA-W3-A828-06 6 17539566 17539566 C T CAP2 Missense_Mutation p.P235S 0.23 deleterious(0.02) possibly_damaging(0.845) TCGA-W3-A828-06 6 17556682 17556682 G A CAP2 3'UTR 0.42 TCGA-W3-A828-06 6 18207647 18207647 G A KDM1B Missense_Mutation p.D328N 0.30 deleterious(0.04) unknown(0) TCGA-W3-A828-06 6 25770329 25770329 G A SLC17A4 Missense_Mutation p.G111E 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 6 25983601 25983601 G T TRIM38 Nonsense_Mutation p.G362* 0.32 TCGA-W3-A828-06 6 25983602 25983602 G T TRIM38 Missense_Mutation p.G362V 0.32 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 6 26020762 26020762 G A HIST1H3A Silent p.K15K 0.36 TCGA-W3-A828-06 6 26045948 26045948 C T HIST1H3C Missense_Mutation p.L104F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-W3-A828-06 6 26368963 26368963 G A BTN3A2 Missense_Mutation p.E86K 0.12 tolerated(0.11) possibly_damaging(0.9) TCGA-W3-A828-06 6 27115099 27115099 G A HIST1H2AH Silent p.L64L 0.38 TCGA-W3-A828-06 6 28327474 28327474 C T ZKSCAN3 Silent p.S37S 0.21 TCGA-W3-A828-06 6 30539220 30539220 G A ABCF1 5'UTR 0.38 TCGA-W3-A828-06 6 30552128 30552128 G A ABCF1 Intron 0.30 TCGA-W3-A828-06 6 30552129 30552129 G A ABCF1 Intron 0.31 TCGA-W3-A828-06 6 30877228 30877228 G A GTF2H4 Missense_Mutation p.A52T 0.41 deleterious(0.02) possibly_damaging(0.866) TCGA-W3-A828-06 6 30890236 30890236 C T VARS2 Missense_Mutation p.H678Y 0.37 deleterious(0) probably_damaging(0.98) TCGA-W3-A828-06 6 31084716 31084716 G A CDSN Missense_Mutation p.P226S 0.29 deleterious_low_confidence(0) unknown(0) TCGA-W3-A828-06 6 31129394 31129394 C T TCF19 Missense_Mutation p.P137S 0.21 deleterious(0) probably_damaging(0.968) TCGA-W3-A828-06 6 3129293 3129293 G A BPHL Silent p.K131K 0.27 TCGA-W3-A828-06 6 3129294 3129294 A T BPHL Nonsense_Mutation p.K132* 0.27 TCGA-W3-A828-06 6 31477695 31477695 G T MICB 3'UTR 0.20 TCGA-W3-A828-06 6 31727726 31727726 C T MSH5 Silent p.V553V 0.24 TCGA-W3-A828-06 6 32049410 32049410 C T RNA5SP206 5'Flank 0.21 TCGA-W3-A828-06 6 32370747 32370747 A G BTNL2 Missense_Mutation p.L225P 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A828-06 6 33381014 33381014 G A PHF1 Missense_Mutation p.G127R 0.29 tolerated(0.33) possibly_damaging(0.837) TCGA-W3-A828-06 6 33411314 33411314 C T SYNGAP1 Silent p.P995P 0.28 TCGA-W3-A828-06 6 33411636 33411636 C T SYNGAP1 Missense_Mutation p.R1103C 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-W3-A828-06 6 33660541 33660541 C T ITPR3 Silent p.L2499L 0.23 TCGA-W3-A828-06 6 33690629 33690629 C T IP6K3 Missense_Mutation p.M367I 0.36 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 6 35810342 35810342 G A SRPK1 Missense_Mutation p.H554Y 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 6 36982778 36982778 C T FGD2 Silent p.F331F 0.14 TCGA-W3-A828-06 6 38830204 38830204 G A DNAH8 Missense_Mutation p.D1877N 0.30 probably_damaging(1) TCGA-W3-A828-06 6 38862495 38862495 C T DNAH8 Missense_Mutation p.P2651S 0.24 probably_damaging(1) TCGA-W3-A828-06 6 39267213 39267213 T G KCNK17 Missense_Mutation p.K330T 0.33 deleterious_low_confidence(0.01) benign(0.006) TCGA-W3-A828-06 6 39512322 39512322 A T KIF6 Intron 0.26 TCGA-W3-A828-06 6 397186 397186 C T IRF4 Missense_Mutation p.P191S 0.35 tolerated(0.23) benign(0.034) TCGA-W3-A828-06 6 39874772 39874772 C T MOCS1 3'UTR 0.34 TCGA-W3-A828-06 6 4031803 4031803 G T PRPF4B Missense_Mutation p.A18S 0.19 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-W3-A828-06 6 4052189 4052189 A T PRPF4B Splice_Site p.X725_splice 0.43 TCGA-W3-A828-06 6 43174160 43174160 C T CUL9 Silent p.S1708S 0.31 TCGA-W3-A828-06 6 43418735 43418735 G A DLK2 Missense_Mutation p.H232Y 0.31 deleterious(0.04) possibly_damaging(0.54) TCGA-W3-A828-06 6 43473512 43473512 C T TJAP1 Silent p.S531S 0.43 TCGA-W3-A828-06 6 43473513 43473513 C T TJAP1 Missense_Mutation p.P532S 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 6 44250198 44250198 T A TCTE1 Silent p.S315S 0.38 TCGA-W3-A828-06 6 46129478 46129478 C T ENPP5 Missense_Mutation p.G340D 0.28 deleterious(0) possibly_damaging(0.697) TCGA-W3-A828-06 6 46293289 46293289 G A RCAN2 Intron 0.38 TCGA-W3-A828-06 6 4995293 4995293 G A RPP40 3'UTR 0.34 TCGA-W3-A828-06 6 56418372 56418383 AGCCAAGCCTGA - DST In_Frame_Del p.F2446_W2449del 0.31 TCGA-W3-A828-06 6 57467196 57467196 G A PRIM2 3'UTR 0.11 TCGA-W3-A828-06 6 64404567 64404567 C T PHF3 Missense_Mutation p.P865S 0.36 tolerated(0.12) benign(0.035) TCGA-W3-A828-06 6 64422810 64422810 C T PHF3 Missense_Mutation p.P1776S 0.37 tolerated(0.13) benign(0.007) TCGA-W3-A828-06 6 66112423 66112423 G A EYS Missense_Mutation p.P378S 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-W3-A828-06 6 69349255 69349255 C T BAI3 Silent p.L230L 0.28 TCGA-W3-A828-06 6 70071248 70071248 G A BAI3 Missense_Mutation p.M1361I 0.29 tolerated(0.13) benign(0) TCGA-W3-A828-06 6 71298473 71298473 C T C6orf57 3'UTR 0.26 TCGA-W3-A828-06 6 71603863 71603863 C T B3GAT2 Missense_Mutation p.R235K 0.27 tolerated(0.57) benign(0.057) TCGA-W3-A828-06 6 72806740 72806740 G A RIMS1 Missense_Mutation p.D112N 0.27 deleterious(0) probably_damaging(0.991) TCGA-W3-A828-06 6 74063735 74063735 G A DPPA5 Missense_Mutation p.P45S 0.27 tolerated(0.12) possibly_damaging(0.707) TCGA-W3-A828-06 6 74072402 74072402 G A KHDC3L 5'UTR 0.57 TCGA-W3-A828-06 6 75812374 75812374 G A COL12A1 Missense_Mutation p.P2785L 0.34 probably_damaging(1) TCGA-W3-A828-06 6 7584621 7584621 G A DSP Missense_Mutation p.G2376R 0.39 probably_damaging(1) TCGA-W3-A828-06 6 7883314 7883314 G A TXNDC5 3'UTR 0.38 TCGA-W3-A828-06 6 79770445 79770445 C A PHIP Missense_Mutation p.V94F 0.26 deleterious(0) probably_damaging(0.954) TCGA-W3-A828-06 6 83877865 83877865 G A DOPEY1 Silent p.L2459L 0.25 TCGA-W3-A828-06 6 85470034 85470034 C G TBX18 Missense_Mutation p.D180H 0.45 deleterious(0) probably_damaging(0.995) TCGA-W3-A828-06 6 90472154 90472154 G T MDN1 Missense_Mutation p.T747K 0.30 benign(0.398) TCGA-W3-A828-06 6 90472156 90472156 A T MDN1 Missense_Mutation p.F746L 0.30 benign(0.004) TCGA-W3-A828-06 6 90572600 90572600 C T CASP8AP2 RNA 0.33 TCGA-W3-A828-06 6 90573618 90573618 T A CASP8AP2 RNA 0.28 TCGA-W3-A828-06 6 93955045 93955045 G A EPHA7 Silent p.S951S 0.31 TCGA-W3-A828-06 6 93955046 93955046 G T EPHA7 Missense_Mutation p.S951Y 0.31 tolerated(0.17) benign(0.003) TCGA-W3-A828-06 6 96651180 96651180 T A FUT9 Missense_Mutation p.M50K 0.31 tolerated(0.95) benign(0.004) TCGA-W3-A828-06 7 100179469 100179469 C T LRCH4 Missense_Mutation p.E177K 0.23 tolerated(0.09) probably_damaging(0.91) TCGA-W3-A828-06 7 100189397 100189397 G A FBXO24 Missense_Mutation p.D182N 0.24 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-W3-A828-06 7 100692223 100692223 C T MUC17 Silent p.F4211F 0.29 TCGA-W3-A828-06 7 100732231 100732231 C T TRIM56 Silent p.V546V 0.23 TCGA-W3-A828-06 7 103137058 103137058 C T RELN Silent p.V3036V 0.28 TCGA-W3-A828-06 7 106522638 106522638 C T PIK3CG Missense_Mutation p.T872I 0.21 deleterious(0) probably_damaging(0.987) TCGA-W3-A828-06 7 107595963 107595963 G A LAMB1 Nonsense_Mutation p.Q935* 0.30 TCGA-W3-A828-06 7 107595964 107595964 G A LAMB1 Silent p.Y934Y 0.30 TCGA-W3-A828-06 7 11485934 11485934 C T THSD7A Missense_Mutation p.E940K 0.26 deleterious(0.01) benign(0.066) TCGA-W3-A828-06 7 116418932 116418932 G A MET Missense_Mutation p.R1166Q 0.14 deleterious(0.03) probably_damaging(0.984) TCGA-W3-A828-06 7 117251700 117251700 G A CFTR Missense_Mutation p.G1069R 0.35 tolerated(0.31) benign(0.011) TCGA-W3-A828-06 7 117432341 117432341 C T CTTNBP2 Silent p.R303R 0.31 TCGA-W3-A828-06 7 117432342 117432342 C T CTTNBP2 Missense_Mutation p.R303K 0.30 tolerated(0.24) benign(0.003) TCGA-W3-A828-06 7 120591176 120591176 C T ING3 Intron 0.36 TCGA-W3-A828-06 7 120906770 120906770 C T CPED1 Silent p.P847P 0.20 TCGA-W3-A828-06 7 120906771 120906771 C T CPED1 Silent p.L848L 0.19 TCGA-W3-A828-06 7 121960374 121960374 G A CADPS2 Nonsense_Mutation p.R1246* 0.28 TCGA-W3-A828-06 7 122033363 122033363 G A CADPS2 Silent p.I965I 0.46 TCGA-W3-A828-06 7 122755442 122755442 C T SLC13A1 3'UTR 0.31 TCGA-W3-A828-06 7 127251726 127251726 G A PAX4 Missense_Mutation p.S251F 0.31 tolerated(0.31) possibly_damaging(0.514) TCGA-W3-A828-06 7 128446891 128446891 C T CCDC136 Silent p.S466S 0.25 TCGA-W3-A828-06 7 128497251 128497251 G A FLNC Silent p.K2547K 0.25 TCGA-W3-A828-06 7 128497252 128497252 G A FLNC Missense_Mutation p.V2548M 0.24 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 7 130364069 130364069 G A TSGA13 Missense_Mutation p.P104L 0.22 tolerated(1) possibly_damaging(0.851) TCGA-W3-A828-06 7 136936040 136936040 C T PTN Missense_Mutation p.E130K 0.39 deleterious(0.03) benign(0.328) TCGA-W3-A828-06 7 138944071 138944071 G A UBN2 Missense_Mutation p.G287E 0.17 tolerated(0.2) probably_damaging(0.997) TCGA-W3-A828-06 7 139715643 139715643 G A TBXAS1 Silent p.E496E 0.27 TCGA-W3-A828-06 7 142119896 142119896 C T TRBV7-7 Missense_Mutation p.G91R 0.35 tolerated(0.05) benign(0.424) TCGA-W3-A828-06 7 142139756 142139756 G A TRBV7-6 Silent p.L5L 0.36 TCGA-W3-A828-06 7 142627446 142627446 C - TRPV5 Frame_Shift_Del p.R75Kfs*11 0.21 TCGA-W3-A828-06 7 142638477 142638477 G A KEL Silent p.P687P 0.35 TCGA-W3-A828-06 7 143417164 143417164 G A FAM115C Missense_Mutation p.A338T 0.73 deleterious(0.01) probably_damaging(0.999) TCGA-W3-A828-06 7 143632792 143632792 C T OR2F2 Missense_Mutation p.S156F 0.27 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 7 143793057 143793057 C T OR2A12 Missense_Mutation p.P286L 0.31 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 7 148080974 148080974 G A CNTNAP2 Missense_Mutation p.D1237N 0.44 tolerated(0.43) benign(0.006) TCGA-W3-A828-06 7 150324822 150324822 C T GIMAP6 Silent p.G288G 0.33 TCGA-W3-A828-06 7 150698978 150698978 T A NOS3 Nonsense_Mutation p.Y524* 0.49 TCGA-W3-A828-06 7 151716776 151716776 G A GALNTL5 Missense_Mutation p.G408R 0.23 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 7 151970830 151970830 G A KMT2C Silent p.F324F 0.04 TCGA-W3-A828-06 7 154876127 154876127 C T HTR5A Missense_Mutation p.P335L 0.19 deleterious(0) probably_damaging(0.997) TCGA-W3-A828-06 7 155473322 155473322 G A RBM33 Missense_Mutation p.G96D 0.36 tolerated(0.19) benign(0.07) TCGA-W3-A828-06 7 158472679 158472679 T A NCAPG2 Missense_Mutation p.E373D 0.45 tolerated(0.27) possibly_damaging(0.892) TCGA-W3-A828-06 7 158554197 158554197 A G ESYT2 Missense_Mutation p.L456P 0.39 tolerated(0.12) benign(0.061) TCGA-W3-A828-06 7 16685316 16685316 C G ANKMY2 5'UTR 0.67 TCGA-W3-A828-06 7 19156376 19156376 C T TWIST1 Nonsense_Mutation p.W190* 0.33 TCGA-W3-A828-06 7 20198802 20198802 A T MACC1 Missense_Mutation p.N394K 0.31 tolerated(0.07) benign(0.033) TCGA-W3-A828-06 7 23385560 23385560 G A IGF2BP3 Missense_Mutation p.P314S 0.35 tolerated(1) benign(0.033) TCGA-W3-A828-06 7 2611826 2611826 G A IQCE Missense_Mutation p.G87E 0.19 deleterious(0) probably_damaging(0.984) TCGA-W3-A828-06 7 26232174 26232174 C T HNRNPA2B1 Missense_Mutation p.G342R 0.32 tolerated_low_confidence(0.43) benign(0.003) TCGA-W3-A828-06 7 29160564 29160564 G A CPVL Silent p.D38D 0.22 TCGA-W3-A828-06 7 30661977 30661977 T C GARS Silent p.I504I 0.21 TCGA-W3-A828-06 7 31102855 31102855 G A ADCYAP1R1 5'UTR 0.19 TCGA-W3-A828-06 7 31617891 31617891 C A CCDC129 Missense_Mutation p.P364H 0.28 tolerated(0.22) benign(0.053) TCGA-W3-A828-06 7 31792969 31792969 C T PDE1C 3'UTR 0.21 TCGA-W3-A828-06 7 31864558 31864558 C T PDE1C Silent p.T503T 0.19 TCGA-W3-A828-06 7 31904686 31904686 G A PDE1C Missense_Mutation p.S267F 0.37 deleterious(0) probably_damaging(0.969) TCGA-W3-A828-06 7 33390889 33390889 A T BBS9 Silent p.P497P 0.29 TCGA-W3-A828-06 7 37936537 37936537 G T NME8 Missense_Mutation p.G537V 0.33 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 7 37960667 37960667 C T EPDR1 Silent p.C42C 0.33 TCGA-W3-A828-06 7 37988539 37988539 G A EPDR1 Missense_Mutation p.D123N 0.38 tolerated(0.06) possibly_damaging(0.786) TCGA-W3-A828-06 7 38500960 38500960 C T AMPH Missense_Mutation p.E314K 0.21 deleterious(0) possibly_damaging(0.488) TCGA-W3-A828-06 7 3861101 3861101 C A SDK1 Missense_Mutation p.Q245K 0.32 tolerated(0.48) benign(0.068) TCGA-W3-A828-06 7 43540308 43540308 C T HECW1 Missense_Mutation p.H1150Y 0.25 deleterious(0.04) possibly_damaging(0.616) TCGA-W3-A828-06 7 48563985 48563985 C T ABCA13 Silent p.F4731F 0.17 TCGA-W3-A828-06 7 5340178 5340178 C T SLC29A4 Silent p.H445H 0.19 TCGA-W3-A828-06 7 5352188 5352188 G A TNRC18 Silent p.I2778I 0.25 TCGA-W3-A828-06 7 56007462 56007462 C T ZNF713 Silent p.T352T 0.78 TCGA-W3-A828-06 7 56128230 56128230 C T CCT6A Intron 0.82 TCGA-W3-A828-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.09 TCGA-W3-A828-06 7 65432869 65432869 A G GUSB Missense_Mutation p.L501S 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-W3-A828-06 7 73472026 73472026 G A ELN Missense_Mutation p.G472R 0.35 unknown(0) TCGA-W3-A828-06 7 77256749 77256749 G A PTPN12 Missense_Mutation p.D585N 0.28 tolerated(0.47) benign(0.001) TCGA-W3-A828-06 7 77408145 77408145 C T RSBN1L Missense_Mutation p.S734F 0.33 deleterious_low_confidence(0) benign(0.023) TCGA-W3-A828-06 7 77408146 77408146 C T RSBN1L Silent p.S734S 0.33 TCGA-W3-A828-06 7 77649222 77649222 C T MAGI2 Missense_Mutation p.D1260N 0.25 deleterious(0.03) possibly_damaging(0.906) TCGA-W3-A828-06 7 77708283 77708283 C T MAGI2 Silent p.T1229T 0.25 TCGA-W3-A828-06 7 82545869 82545869 G A PCLO Silent p.A3811A 0.29 TCGA-W3-A828-06 7 82595286 82595286 T A PCLO Missense_Mutation p.E1273V 0.32 unknown(0) TCGA-W3-A828-06 7 83029424 83029424 C T SEMA3E Missense_Mutation p.G429E 0.44 tolerated(0.19) probably_damaging(0.998) TCGA-W3-A828-06 7 87190676 87190676 G A ABCB1 Missense_Mutation p.L244F 0.34 deleterious(0.01) benign(0.125) TCGA-W3-A828-06 7 88965624 88965624 G A ZNF804B Missense_Mutation p.V1110I 0.31 deleterious(0.02) benign(0.015) TCGA-W3-A828-06 7 94916443 94916443 G A PPP1R9A Intron 0.33 TCGA-W3-A828-06 7 94937330 94937330 C T PON1 Missense_Mutation p.D231N 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-W3-A828-06 7 96747121 96747121 C T ACN9 Missense_Mutation p.S29F 0.24 deleterious(0.01) benign(0.325) TCGA-W3-A828-06 7 98633135 98633135 C A SMURF1 Intron 0.42 TCGA-W3-A828-06 7 99303061 99303061 G A CYP3A7 3'UTR 0.15 TCGA-W3-A828-06 7 99995512 99995512 G A PILRA Silent p.R228R 0.31 TCGA-W3-A828-06 8 101721865 101721865 C T PABPC1 Missense_Mutation p.R356K 0.19 tolerated(0.42) benign(0.089) TCGA-W3-A828-06 8 10470202 10470202 G A RP1L1 Missense_Mutation p.S469F 0.31 benign(0.273) TCGA-W3-A828-06 8 105001565 105001565 G C RIMS2 Missense_Mutation p.R987P 0.19 tolerated_low_confidence(0.06) probably_damaging(0.91) TCGA-W3-A828-06 8 107719410 107719410 A T OXR1 Intron 0.56 TCGA-W3-A828-06 8 113504827 113504827 G T CSMD3 Silent p.V1723V 0.48 TCGA-W3-A828-06 8 121295993 121295993 C T COL14A1 Missense_Mutation p.P1315S 0.44 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 8 124042882 124042882 T A DERL1 Missense_Mutation p.L76F 0.21 tolerated(0.07) benign(0.443) TCGA-W3-A828-06 8 124243619 124243619 G A C8orf76 Nonsense_Mutation p.Q246* 0.45 TCGA-W3-A828-06 8 124545456 124545456 T A FBXO32 Missense_Mutation p.Y85F 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-W3-A828-06 8 125076628 125076628 C T FER1L6 Silent p.A1123A 0.49 TCGA-W3-A828-06 8 128428462 128428462 C T POU5F1B Silent p.V117V 0.21 TCGA-W3-A828-06 8 12878718 12878718 G A KIAA1456 Missense_Mutation p.R177K 0.36 tolerated(0.71) benign(0.294) TCGA-W3-A828-06 8 12878719 12878719 G A KIAA1456 Silent p.R177R 0.36 TCGA-W3-A828-06 8 131792819 131792819 G A ADCY8 Silent p.S1191S 0.40 TCGA-W3-A828-06 8 131921974 131921974 G A ADCY8 Silent p.L540L 0.48 TCGA-W3-A828-06 8 139151280 139151280 C T FAM135B Missense_Mutation p.D1284N 0.51 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 8 139153562 139153562 G A FAM135B Silent p.I1223I 0.20 TCGA-W3-A828-06 8 13947979 13947979 G A SGCZ Silent p.S304S 0.26 TCGA-W3-A828-06 8 139815157 139815157 C T COL22A1 Silent p.G505G 0.28 TCGA-W3-A828-06 8 141756958 141756958 T A PTK2 Missense_Mutation p.L473F 0.50 tolerated(0.26) probably_damaging(0.933) TCGA-W3-A828-06 8 143572156 143572156 C T BAI1 Silent p.I885I 0.47 TCGA-W3-A828-06 8 144239715 144239715 C T LY6H Silent p.G146G 0.58 TCGA-W3-A828-06 8 144403382 144403382 C T TOP1MT Missense_Mutation p.V379M 0.19 deleterious(0) probably_damaging(0.993) TCGA-W3-A828-06 8 144990985 144990985 G A PLEC Missense_Mutation p.A4472V 0.53 probably_damaging(0.999) TCGA-W3-A828-06 8 145268038 145268038 T A MROH1 Intron 0.28 TCGA-W3-A828-06 8 145579808 145579808 C T FBXL6 Missense_Mutation p.S431N 0.23 deleterious(0.04) probably_damaging(0.959) TCGA-W3-A828-06 8 145771086 145771086 A G ARHGAP39 Missense_Mutation p.S690P 0.19 tolerated(0.24) probably_damaging(0.996) TCGA-W3-A828-06 8 146017234 146017234 C T RPL8 Silent p.R68R 0.29 TCGA-W3-A828-06 8 17055148 17055148 C T ZDHHC2 Missense_Mutation p.S144F 0.23 deleterious(0) possibly_damaging(0.883) TCGA-W3-A828-06 8 2054331 2054331 C T MYOM2 Missense_Mutation p.S981F 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 8 21900426 21900426 G A FGF17 5'UTR 0.21 TCGA-W3-A828-06 8 21976677 21976677 C T HR Missense_Mutation p.D1033N 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-W3-A828-06 8 22102629 22102629 C T POLR3D 5'Flank 0.50 TCGA-W3-A828-06 8 22471751 22471751 C T CCAR2 Missense_Mutation p.S284F 0.24 tolerated(0.27) probably_damaging(0.909) TCGA-W3-A828-06 8 24254874 24254874 G A ADAMDEC1 Missense_Mutation p.E178K 0.24 tolerated(0.56) benign(0.043) TCGA-W3-A828-06 8 24256521 24256521 G A ADAMDEC1 Silent p.G299G 0.30 TCGA-W3-A828-06 8 27098664 27098664 C A STMN4 Silent p.G102G 0.40 TCGA-W3-A828-06 8 27321442 27321442 C T CHRNA2 Nonsense_Mutation p.W173* 0.42 TCGA-W3-A828-06 8 27614269 27614269 G A CCDC25 Silent p.L45L 0.38 TCGA-W3-A828-06 8 27931966 27931966 G A NUGGC 5'UTR 0.43 TCGA-W3-A828-06 8 28669866 28669866 G C INTS9 Missense_Mutation p.S241C 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 8 28747456 28747456 C T INTS9 5'UTR 0.50 TCGA-W3-A828-06 8 30948350 30948350 G A WRN Missense_Mutation p.G574E 0.40 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 8 38065124 38065124 C T BAG4 Missense_Mutation p.P158L 0.31 deleterious(0) possibly_damaging(0.735) TCGA-W3-A828-06 8 39602358 39602358 A C ADAM2 3'UTR 0.39 TCGA-W3-A828-06 8 42587210 42587210 G A CHRNB3 Missense_Mutation p.V254M 0.25 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 8 42977840 42977840 C T POMK Silent p.F291F 0.30 TCGA-W3-A828-06 8 48744479 48744479 C T PRKDC Missense_Mutation p.G2720S 0.32 benign(0.004) TCGA-W3-A828-06 8 51664671 51664671 G T SNTG1 Missense_Mutation p.K465N 0.30 deleterious(0) probably_damaging(0.992) TCGA-W3-A828-06 8 52287242 52287242 C T PXDNL Missense_Mutation p.E1203K 0.41 deleterious(0) probably_damaging(0.946) TCGA-W3-A828-06 8 53025817 53025817 G A ST18 Missense_Mutation p.P1029S 0.35 deleterious(0.01) probably_damaging(1) TCGA-W3-A828-06 8 56436505 56436505 G A XKR4 Missense_Mutation p.D558N 0.30 tolerated(0.1) benign(0.158) TCGA-W3-A828-06 8 57079503 57079503 G A PLAG1 Missense_Mutation p.P268S 0.20 tolerated(0.14) benign(0.004) TCGA-W3-A828-06 8 6682804 6682804 G T XKR5 RNA 0.32 TCGA-W3-A828-06 8 70498642 70498642 G A SULF1 Missense_Mutation p.G155R 0.29 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 8 71128948 71128948 G A NCOA2 Silent p.P11P 0.38 TCGA-W3-A828-06 8 71553263 71553263 A G LACTB2 Silent p.N205N 0.23 TCGA-W3-A828-06 8 75275289 75275289 G A GDAP1 Splice_Site p.X232_splice 0.39 TCGA-W3-A828-06 8 75898335 75898335 A T CRISPLD1 Missense_Mutation p.K38I 0.28 deleterious(0) probably_damaging(0.927) TCGA-W3-A828-06 8 86057770 86057770 G A LRRCC1 3'UTR 0.31 TCGA-W3-A828-06 8 8887507 8887507 G A ERI1 Missense_Mutation p.G338D 0.28 tolerated_low_confidence(0.09) possibly_damaging(0.63) TCGA-W3-A828-06 8 89058954 89058954 T G MMP16 Missense_Mutation p.T478P 0.23 deleterious(0.03) probably_damaging(0.966) TCGA-W3-A828-06 8 94929342 94929342 C T PDP1 5'UTR 0.27 TCGA-W3-A828-06 8 95543245 95543245 G A KIAA1429 Missense_Mutation p.P185S 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-W3-A828-06 8 99040007 99040007 G A MATN2 Missense_Mutation p.G769E 0.16 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 9 100124032 100124032 G A CCDC180 Missense_Mutation p.E1214K 0.28 tolerated(0.86) possibly_damaging(0.486) TCGA-W3-A828-06 9 100139069 100139069 G A CCDC180 Missense_Mutation p.E1667K 0.27 deleterious(0.04) possibly_damaging(0.486) TCGA-W3-A828-06 9 101597641 101597641 C T GALNT12 Missense_Mutation p.S343F 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 9 103046748 103046748 C T INVS Missense_Mutation p.P644L 0.44 tolerated(0.21) benign(0.003) TCGA-W3-A828-06 9 105767362 105767362 G A CYLC2 Missense_Mutation p.G150E 0.28 tolerated(0.38) unknown(0) TCGA-W3-A828-06 9 107298774 107298774 A C OR13C3 Silent p.S107S 0.37 TCGA-W3-A828-06 9 111625872 111625872 G A ACTL7A Missense_Mutation p.E424K 0.22 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 9 112170621 112170626 TTGATA AATT PTPN3 Frame_Shift_Del p.V537Efs*15 0.28 TCGA-W3-A828-06 9 113170174 113170174 C T SVEP1 Missense_Mutation p.G2569D 0.35 probably_damaging(1) TCGA-W3-A828-06 9 115760522 115760522 A T ZNF883 RNA 0.33 TCGA-W3-A828-06 9 115806215 115806215 T C ZFP37 Missense_Mutation p.K228R 0.39 tolerated(0.12) benign(0.285) TCGA-W3-A828-06 9 117838787 117838787 C T TNC Silent p.R914R 0.29 TCGA-W3-A828-06 9 120475907 120475907 C T TLR4 Silent p.L501L 0.36 TCGA-W3-A828-06 9 121929907 121929907 C T BRINP1 Missense_Mutation p.E581K 0.33 deleterious(0.01) possibly_damaging(0.899) TCGA-W3-A828-06 9 123744153 123744153 A G C5 Missense_Mutation p.I1152T 0.32 deleterious(0) possibly_damaging(0.578) TCGA-W3-A828-06 9 125316197 125316197 G A OR1N2 Missense_Mutation p.G250E 0.33 deleterious(0) probably_damaging(0.926) TCGA-W3-A828-06 9 127572552 127572552 G A OLFML2A Missense_Mutation p.G607D 0.28 tolerated(0.28) probably_damaging(0.982) TCGA-W3-A828-06 9 129831590 129831590 G A RALGPS1 Missense_Mutation p.E189K 0.34 tolerated(0.13) possibly_damaging(0.481) TCGA-W3-A828-06 9 130149557 130149557 C T GARNL3 Missense_Mutation p.P825L 0.29 tolerated(0.1) benign(0.059) TCGA-W3-A828-06 9 130494415 130494415 G A TOR2A Silent p.V288V 0.31 TCGA-W3-A828-06 9 13123235 13123235 G A MPDZ Missense_Mutation p.P1624S 0.47 deleterious(0) probably_damaging(0.996) TCGA-W3-A828-06 9 131345058 131345058 T C SPTAN1 Missense_Mutation p.F579S 0.29 tolerated(0.36) benign(0.113) TCGA-W3-A828-06 9 131397197 131397197 G A WDR34 Missense_Mutation p.P329S 0.31 tolerated(0.52) benign(0.001) TCGA-W3-A828-06 9 131669652 131669652 G A LRRC8A Missense_Mutation p.R70Q 0.23 tolerated(0.64) benign(0.002) TCGA-W3-A828-06 9 133755892 133755893 - A ABL1 Frame_Shift_Ins p.E528Gfs*38 0.31 TCGA-W3-A828-06 9 134459700 134459700 C T RAPGEF1 Missense_Mutation p.E970K 0.33 deleterious(0) possibly_damaging(0.615) TCGA-W3-A828-06 9 135771828 135771828 G A TSC1 Missense_Mutation p.R1097C 0.50 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 9 139741204 139741204 C T C9orf172 Silent p.L780L 0.25 TCGA-W3-A828-06 9 140130483 140130483 C T SLC34A3 Missense_Mutation p.P472L 0.42 tolerated(0.19) probably_damaging(0.999) TCGA-W3-A828-06 9 141006879 141006879 G A CACNA1B Missense_Mutation p.E1820K 0.48 deleterious(0) possibly_damaging(0.715) TCGA-W3-A828-06 9 154779 154779 C T CBWD1 Missense_Mutation p.D198N 0.58 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 9 19346933 19346933 C T DENND4C Missense_Mutation p.S1340F 0.59 deleterious(0) probably_damaging(0.967) TCGA-W3-A828-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.50 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 9 27206762 27206762 G T TEK Silent p.R849R 0.62 TCGA-W3-A828-06 9 32457026 32457026 G A DDX58 3'UTR 0.53 TCGA-W3-A828-06 9 32784256 32784256 C T TMEM215 Silent p.F25F 0.49 TCGA-W3-A828-06 9 334283 334283 G A DOCK8 Missense_Mutation p.G395E 0.27 deleterious(0) probably_damaging(0.998) TCGA-W3-A828-06 9 35094240 35094240 C T PIGO Missense_Mutation p.G210S 0.52 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 9 35403883 35403883 C T UNC13B Silent p.A1543A 0.50 TCGA-W3-A828-06 9 35697776 35697776 G A TLN1 3'UTR 0.41 TCGA-W3-A828-06 9 36677240 36677240 C T MELK Missense_Mutation p.P621L 0.49 tolerated(0.14) benign(0.17) TCGA-W3-A828-06 9 4697122 4697122 C T CDC37L1 Nonsense_Mutation p.Q179* 0.50 TCGA-W3-A828-06 9 69420398 69420398 C T ANKRD20A4 Missense_Mutation p.P430S 0.10 tolerated(0.12) benign(0.216) TCGA-W3-A828-06 9 74332878 74332878 G A TMEM2 Silent p.I795I 0.32 TCGA-W3-A828-06 9 75773658 75773658 C T ANXA1 Silent p.P38P 0.27 TCGA-W3-A828-06 9 77390867 77390867 C A TRPM6 Missense_Mutation p.G1112V 0.34 tolerated(0.44) benign(0.126) TCGA-W3-A828-06 9 80932643 80932643 C T PSAT1 Silent p.A264A 0.36 TCGA-W3-A828-06 9 84609928 84609928 C T SPATA31D1 Missense_Mutation p.P1515S 0.29 tolerated(0.2) probably_damaging(0.975) TCGA-W3-A828-06 9 90500997 90500997 C T SPATA31E1 Missense_Mutation p.P532L 0.32 deleterious(0) possibly_damaging(0.868) TCGA-W3-A828-06 9 90501545 90501545 G A SPATA31E1 Missense_Mutation p.D715N 0.40 tolerated(0.15) benign(0.016) TCGA-W3-A828-06 9 90584832 90584832 G A CDK20 Missense_Mutation p.S189F 0.23 deleterious(0.02) benign(0.23) TCGA-W3-A828-06 9 91653058 91653058 T A SHC3 Silent p.G502G 0.33 TCGA-W3-A828-06 9 92020287 92020287 G A SEMA4D Missense_Mutation p.R29W 0.24 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 9 92020288 92020288 G A SEMA4D Silent p.P28P 0.23 TCGA-W3-A828-06 9 95378258 95378258 G A IPPK Silent p.P444P 0.34 TCGA-W3-A828-06 9 95997190 95997190 G A WNK2 Silent p.S392S 0.33 TCGA-W3-A828-06 9 95997191 95997191 G A WNK2 Missense_Mutation p.E393K 0.32 unknown(0) TCGA-W3-A828-06 9 97063355 97063355 G A ZNF169 Silent p.Q505Q 0.34 TCGA-W3-A828-06 9 98238341 98238341 G A PTCH1 Missense_Mutation p.P568L 0.17 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 9 99521281 99521281 G A ZNF510 Missense_Mutation p.R611W 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-W3-A828-06 9 99521282 99521282 G A ZNF510 Silent p.V610V 0.33 TCGA-W3-A828-06 9 99699479 99699479 T C NUTM2G Silent p.P372P 0.32 TCGA-W3-A828-06 9 99797019 99797019 G A CTSV Silent p.L298L 0.27 TCGA-W3-A828-06 X 101382303 101382303 G A TCEAL2 Missense_Mutation p.M167I 0.58 tolerated(0.1) benign(0.072) TCGA-W3-A828-06 X 10188757 10188757 G A CLCN4 Missense_Mutation p.E678K 0.62 tolerated(0.37) benign(0.015) TCGA-W3-A828-06 X 104999280 104999280 C T IL1RAPL2 Silent p.V434V 0.56 TCGA-W3-A828-06 X 106358604 106358604 G A RBM41 Silent p.F167F 0.72 TCGA-W3-A828-06 X 107412760 107412760 C T COL4A6 Missense_Mutation p.G1220E 0.59 probably_damaging(1) TCGA-W3-A828-06 X 110437614 110437614 G A PAK3 Missense_Mutation p.D396N 0.77 tolerated(0.06) possibly_damaging(0.64) TCGA-W3-A828-06 X 11308586 11308586 C T ARHGAP6 Intron 0.55 TCGA-W3-A828-06 X 118223611 118223611 G A KIAA1210 Missense_Mutation p.P528S 0.74 tolerated(0.43) benign(0.135) TCGA-W3-A828-06 X 119500475 119500475 G A ATP1B4 Silent p.E53E 0.78 TCGA-W3-A828-06 X 119670872 119670872 A T CUL4B Missense_Mutation p.N670K 0.55 tolerated(0.64) benign(0.014) TCGA-W3-A828-06 X 123556213 123556213 C T TENM1 Silent p.Q1460Q 0.54 TCGA-W3-A828-06 X 127185202 127185202 G T ACTRT1 Silent p.I328I 0.15 TCGA-W3-A828-06 X 127186037 127186037 C T ACTRT1 Missense_Mutation p.R50K 0.68 tolerated(0.13) possibly_damaging(0.694) TCGA-W3-A828-06 X 127186075 127186075 G A ACTRT1 Silent p.S37S 0.71 TCGA-W3-A828-06 X 12905417 12905417 T C TLR7 Missense_Mutation p.V597A 0.75 tolerated(0.51) benign(0) TCGA-W3-A828-06 X 130412014 130412014 A G IGSF1 Silent p.F717F 0.69 TCGA-W3-A828-06 X 134947930 134947930 T C CT45A5 Missense_Mutation p.K132R 0.73 deleterious(0.01) probably_damaging(0.998) TCGA-W3-A828-06 X 135770102 135770102 T A ARHGEF6 Nonsense_Mutation p.K412* 0.70 TCGA-W3-A828-06 X 141290636 141290636 G A MAGEC2 3'UTR 0.61 TCGA-W3-A828-06 X 153038744 153038744 G A PLXNB3 Missense_Mutation p.G1012E 0.80 tolerated(0.13) benign(0.262) TCGA-W3-A828-06 X 153040346 153040346 G A PLXNB3 Missense_Mutation p.E1338K 0.74 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 X 153050627 153050627 A G SRPK3 Silent p.R506R 0.70 TCGA-W3-A828-06 X 153277220 153277220 G A IRAK1 3'UTR 0.80 TCGA-W3-A828-06 X 154493482 154493482 C T RAB39B Missense_Mutation p.G31D 0.62 tolerated(0.12) probably_damaging(0.983) TCGA-W3-A828-06 X 18924640 18924640 C T PHKA2 Missense_Mutation p.E927K 0.54 deleterious(0) probably_damaging(0.999) TCGA-W3-A828-06 X 19372638 19372638 C T PDHA1 Silent p.A218A 0.51 TCGA-W3-A828-06 X 22231071 22231071 C T PHEX Missense_Mutation p.P566S 0.61 tolerated(0.16) benign(0.168) TCGA-W3-A828-06 X 23019901 23019901 C T DDX53 Missense_Mutation p.S576L 0.62 tolerated(0.05) benign(0.002) TCGA-W3-A828-06 X 3007607 3007607 G A ARSF Missense_Mutation p.D301N 0.69 tolerated(0.47) benign(0.002) TCGA-W3-A828-06 X 30269254 30269254 C T MAGEB1 Missense_Mutation p.A215V 0.33 deleterious(0.02) possibly_damaging(0.859) TCGA-W3-A828-06 X 34148766 34148766 G A FAM47A Missense_Mutation p.R544C 0.65 tolerated(0.18) possibly_damaging(0.835) TCGA-W3-A828-06 X 34961846 34961846 C T FAM47B Missense_Mutation p.P300S 0.80 tolerated(0.24) benign(0.005) TCGA-W3-A828-06 X 43634451 43634451 G A MAOB Silent p.F402F 0.56 TCGA-W3-A828-06 X 51488447 51488447 C T GSPT2 Silent p.F575F 0.68 TCGA-W3-A828-06 X 53576313 53576313 G A HUWE1 Silent p.Y3214Y 0.56 TCGA-W3-A828-06 X 55050228 55050228 G A ALAS2 Missense_Mutation p.S126F 0.47 tolerated(0.08) benign(0.092) TCGA-W3-A828-06 X 65835779 65835779 G A EDA2R Silent p.S28S 0.73 TCGA-W3-A828-06 X 69497579 69497579 G A ARR3 Missense_Mutation p.G208E 0.60 deleterious(0.01) probably_damaging(0.991) TCGA-W3-A828-06 X 70597021 70597021 C A TAF1 Missense_Mutation p.P252T 0.70 deleterious(0) probably_damaging(1) TCGA-W3-A828-06 X 73068070 73068070 G A XIST RNA 0.67 TCGA-W3-A828-06 X 73961840 73961840 G A KIAA2022 Missense_Mutation p.S851L 0.55 deleterious(0.03) benign(0.156) TCGA-W3-A828-06 X 73963455 73963455 G A KIAA2022 Nonsense_Mutation p.R313* 0.62 TCGA-W3-A828-06 X 79947327 79947327 G A BRWD3 Missense_Mutation p.S1159F 0.50 deleterious(0.01) possibly_damaging(0.808) TCGA-W3-A828-06 X 83357101 83357101 C T RPS6KA6 Missense_Mutation p.G574R 0.70 deleterious(0.02) benign(0.251) TCGA-W3-A828-06 X 89177664 89177664 A T TGIF2LX Nonsense_Mutation p.K194* 0.65 TCGA-W3-AA1O-06 10 108337278 108337278 G A SORCS1 Intron 0.33 TCGA-W3-AA1O-06 10 115602175 115602175 C T DCLRE1A Silent p.E864E 0.31 TCGA-W3-AA1O-06 10 116198969 116198969 C T ABLIM1 Missense_Mutation p.R703Q 0.38 tolerated(0.06) benign(0.075) TCGA-W3-AA1O-06 10 121551532 121551532 G A INPP5F Missense_Mutation p.R199Q 0.26 tolerated(0.67) benign(0.004) TCGA-W3-AA1O-06 10 124266371 124266371 G A HTRA1 Missense_Mutation p.M314I 0.37 tolerated(0.06) benign(0.209) TCGA-W3-AA1O-06 10 124268190 124268190 A T HTRA1 Missense_Mutation p.I342F 0.34 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1O-06 10 129923878 129923878 G A MKI67 Silent p.P18P 0.37 TCGA-W3-AA1O-06 10 129923879 129923879 G A MKI67 Missense_Mutation p.P18L 0.37 tolerated(0.15) benign(0.102) TCGA-W3-AA1O-06 10 14816385 14816385 G A FAM107B Missense_Mutation p.S93L 0.37 deleterious_low_confidence(0) benign(0.118) TCGA-W3-AA1O-06 10 15590516 15590516 C T ITGA8 Missense_Mutation p.E940K 0.49 deleterious(0.02) benign(0.102) TCGA-W3-AA1O-06 10 25887108 25887108 C T GPR158 Silent p.S851S 0.32 TCGA-W3-AA1O-06 10 25888076 25888076 G A GPR158 Nonsense_Mutation p.W1174* 0.33 TCGA-W3-AA1O-06 10 27311550 27311550 G A ANKRD26 Silent p.F1384F 0.33 TCGA-W3-AA1O-06 10 27538951 27538951 G A RP11-85G18.6 Intron 0.31 TCGA-W3-AA1O-06 10 28409234 28409234 C T MPP7 Missense_Mutation p.G259E 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1O-06 10 37508100 37508100 G A ANKRD30A Missense_Mutation p.E1098K 0.36 tolerated(0.28) benign(0.001) TCGA-W3-AA1O-06 10 38126602 38126602 C T ZNF248 Missense_Mutation p.E61K 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-W3-AA1O-06 10 43597929 43597929 C T RET Silent p.S159S 0.27 TCGA-W3-AA1O-06 10 43619227 43619227 G A RET Missense_Mutation p.M970I 0.42 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 10 48371297 48371297 C T ZNF488 Silent p.S255S 0.46 TCGA-W3-AA1O-06 10 49386169 49386169 G A FRMPD2 Missense_Mutation p.S939L 0.47 tolerated(0.16) benign(0.007) TCGA-W3-AA1O-06 10 55571343 55571343 C T PCDH15 Silent p.R1470R 0.42 TCGA-W3-AA1O-06 10 55582303 55582303 C T PCDH15 Missense_Mutation p.R1730K 0.41 tolerated_low_confidence(0.24) benign(0.002) TCGA-W3-AA1O-06 10 56089442 56089442 G A PCDH15 Missense_Mutation p.P207S 0.38 tolerated(0.38) possibly_damaging(0.53) TCGA-W3-AA1O-06 10 61926616 61926616 C T ANK3 Silent p.T839T 0.33 TCGA-W3-AA1O-06 10 69881775 69881775 G A MYPN Missense_Mutation p.E194K 0.40 tolerated(0.46) benign(0.004) TCGA-W3-AA1O-06 10 70715928 70715928 C T DDX21 5'UTR 0.50 TCGA-W3-AA1O-06 10 73511433 73511433 G A C10orf54 Missense_Mutation p.P297L 0.42 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1O-06 10 75301416 75301416 G A USP54 Missense_Mutation p.T218I 0.47 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1O-06 10 88930252 88930252 G A FAM35A Missense_Mutation p.E551K 0.41 tolerated(0.92) benign(0.001) TCGA-W3-AA1O-06 10 90537870 90537870 C T LIPN Silent p.L356L 0.25 TCGA-W3-AA1O-06 10 97959847 97959847 A T BLNK Nonsense_Mutation p.L360* 0.28 TCGA-W3-AA1O-06 10 98808737 98808737 G A SLIT1 Silent p.I480I 0.40 TCGA-W3-AA1O-06 11 101374826 101374826 C T TRPC6 Missense_Mutation p.D292N 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 11 107299639 107299639 G A CWF19L2 Missense_Mutation p.T440I 0.28 tolerated(0.12) benign(0.004) TCGA-W3-AA1O-06 11 109294657 109294657 G A C11orf87 Missense_Mutation p.E100K 0.30 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1O-06 11 111636109 111636109 C A PPP2R1B Splice_Site p.X39_splice 0.42 TCGA-W3-AA1O-06 11 113264242 113264242 G A ANKK1 Missense_Mutation p.M75I 0.32 tolerated(0.36) benign(0.05) TCGA-W3-AA1O-06 11 114568869 114568869 G A NXPE2 Missense_Mutation p.E79K 0.27 tolerated(0.09) benign(0.018) TCGA-W3-AA1O-06 11 1154284 1154284 C T MUC5AC Missense_Mutation p.P44S 0.36 tolerated(0.2) benign(0.002) TCGA-W3-AA1O-06 11 117307941 117307941 C T DSCAML1 Silent p.T1599T 0.33 TCGA-W3-AA1O-06 11 117321318 117321318 C T DSCAML1 Missense_Mutation p.G1279R 0.20 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1O-06 11 118037619 118037619 C T SCN2B Missense_Mutation p.D211N 0.29 deleterious_low_confidence(0.01) benign(0.121) TCGA-W3-AA1O-06 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.46 tolerated(0.16) benign(0.04) TCGA-W3-AA1O-06 11 118279801 118279801 C A ATP5L Silent p.G100G 0.32 TCGA-W3-AA1O-06 11 119182071 119182071 G A MCAM Missense_Mutation p.P490S 0.24 tolerated(0.1) probably_damaging(1) TCGA-W3-AA1O-06 11 120188044 120188044 G A POU2F3 Silent p.V416V 0.26 TCGA-W3-AA1O-06 11 121428080 121428080 C T SORL1 Missense_Mutation p.R877C 0.44 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1O-06 11 121429386 121429386 C T SORL1 Missense_Mutation p.S917F 0.45 tolerated(0.25) benign(0.33) TCGA-W3-AA1O-06 11 121476142 121476142 G A SORL1 Missense_Mutation p.E1604K 0.32 deleterious(0.03) benign(0.347) TCGA-W3-AA1O-06 11 123901135 123901135 G A OR10G8 Missense_Mutation p.G269E 0.38 tolerated(0.12) benign(0.05) TCGA-W3-AA1O-06 11 123909592 123909592 C T OR10G7 Silent p.G39G 0.27 TCGA-W3-AA1O-06 11 124120458 124120458 C T OR8G1 Silent p.F12F 0.35 TCGA-W3-AA1O-06 11 124489874 124489874 C T PANX3 3'UTR 0.36 TCGA-W3-AA1O-06 11 124742288 124742288 C T ROBO3 Silent p.F390F 0.21 TCGA-W3-AA1O-06 11 125359430 125359430 C T FEZ1 Missense_Mutation p.E82K 0.35 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 11 129999990 129999990 T C APLP2 Silent p.L505L 0.35 TCGA-W3-AA1O-06 11 130005498 130005498 C T APLP2 Silent p.F575F 0.44 TCGA-W3-AA1O-06 11 130068404 130068404 T G ST14 Missense_Mutation p.S524R 0.49 tolerated(0.09) possibly_damaging(0.493) TCGA-W3-AA1O-06 11 134240244 134240244 C T GLB1L2 Missense_Mutation p.T389M 0.42 tolerated(0.13) benign(0.012) TCGA-W3-AA1O-06 11 1475811 1475811 G A BRSK2 Silent p.K593K 0.53 TCGA-W3-AA1O-06 11 1629424 1629424 C T KRTAP5-3 Silent p.K64K 0.40 TCGA-W3-AA1O-06 11 17143864 17143864 G A PIK3C2A Missense_Mutation p.P843L 0.28 tolerated(0.64) benign(0.007) TCGA-W3-AA1O-06 11 17419288 17419288 G A ABCC8 Silent p.S1270S 0.24 TCGA-W3-AA1O-06 11 17522678 17522678 G A USH1C Missense_Mutation p.A767V 0.61 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-W3-AA1O-06 11 18231806 18231806 C T RP11-113D6.10 3'UTR 0.38 TCGA-W3-AA1O-06 11 22297686 22297686 C T ANO5 Missense_Mutation p.H821Y 0.29 tolerated(0.32) possibly_damaging(0.807) TCGA-W3-AA1O-06 11 294639 294639 C T ATHL1 Missense_Mutation p.P702S 0.36 tolerated_low_confidence(0.1) benign(0) TCGA-W3-AA1O-06 11 30902834 30902834 G A DCDC1 Missense_Mutation p.R1699C 0.38 deleterious(0) possibly_damaging(0.835) TCGA-W3-AA1O-06 11 32739639 32739639 C T CCDC73 Missense_Mutation p.E64K 0.17 deleterious(0) probably_damaging(0.946) TCGA-W3-AA1O-06 11 3756494 3756494 C A NUP98 Missense_Mutation p.S490I 0.12 deleterious(0.02) possibly_damaging(0.474) TCGA-W3-AA1O-06 11 4388697 4388697 G A OR52B4 Missense_Mutation p.P277S 0.44 deleterious(0.01) benign(0.005) TCGA-W3-AA1O-06 11 45832514 45832514 C T SLC35C1 Silent p.L241L 0.22 TCGA-W3-AA1O-06 11 45970486 45970486 A C PHF21A Missense_Mutation p.S412R 0.32 tolerated(0.81) benign(0.049) TCGA-W3-AA1O-06 11 4616064 4616064 G A OR52I1 Missense_Mutation p.A266T 0.46 deleterious(0.02) benign(0.049) TCGA-W3-AA1O-06 11 46338973 46338973 C T CREB3L1 Missense_Mutation p.S398F 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 11 4661245 4661245 C T OR51D1 Silent p.F75F 0.31 TCGA-W3-AA1O-06 11 47283358 47283358 A G NR1H3 Intron 0.39 TCGA-W3-AA1O-06 11 47712297 47712297 G A AGBL2 Missense_Mutation p.T321I 0.35 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 11 4904033 4904033 C T OR51T1 Missense_Mutation p.R329C 0.41 deleterious(0.02) probably_damaging(0.931) TCGA-W3-AA1O-06 11 5221360 5221360 G A OR51V1 Nonsense_Mutation p.Q191* 0.34 TCGA-W3-AA1O-06 11 5247980 5247980 C T HBB Missense_Mutation p.D48N 0.27 tolerated(1) benign(0.064) TCGA-W3-AA1O-06 11 5247981 5247981 C T HBB Silent p.G47G 0.27 TCGA-W3-AA1O-06 11 5269604 5269604 G A HBG1 Silent p.S143S 0.17 TCGA-W3-AA1O-06 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.21 deleterious(0.04) probably_damaging(0.987) TCGA-W3-AA1O-06 11 55063023 55063023 G A TRIM51HP RNA 0.29 TCGA-W3-AA1O-06 11 55135906 55135906 C T OR4A15 Missense_Mutation p.H183Y 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-W3-AA1O-06 11 55433542 55433542 G A OR4C6 Nonsense_Mutation p.W300* 0.33 TCGA-W3-AA1O-06 11 55587345 55587345 C T OR5D18 Silent p.P80P 0.35 TCGA-W3-AA1O-06 11 55587837 55587837 C T OR5D18 Silent p.S244S 0.51 TCGA-W3-AA1O-06 11 56230457 56230457 G A OR5M9 Missense_Mutation p.R141W 0.37 tolerated(0.21) benign(0.022) TCGA-W3-AA1O-06 11 56468454 56468454 G A OR9G1 Missense_Mutation p.M197I 0.15 tolerated(0.31) benign(0.001) TCGA-W3-AA1O-06 11 57003543 57003543 G A APLNR Silent p.F312F 0.28 TCGA-W3-AA1O-06 11 57235493 57235493 G A RTN4RL2 Missense_Mutation p.G148D 0.33 tolerated(0.47) benign(0.232) TCGA-W3-AA1O-06 11 5758189 5758189 C T OR56B1 Missense_Mutation p.S148F 0.46 tolerated(0.06) benign(0.014) TCGA-W3-AA1O-06 11 5906188 5906188 C T OR52E4 Silent p.I222I 0.35 TCGA-W3-AA1O-06 11 60161290 60161290 C T MS4A7 Missense_Mutation p.H227Y 0.35 tolerated(0.36) benign(0.004) TCGA-W3-AA1O-06 11 60703786 60703786 G A TMEM132A Missense_Mutation p.E828K 0.44 tolerated(0.6) probably_damaging(0.987) TCGA-W3-AA1O-06 11 62290119 62290119 G A AHNAK Nonsense_Mutation p.R3924* 0.43 TCGA-W3-AA1O-06 11 62300024 62300024 G A AHNAK Missense_Mutation p.P622L 0.38 probably_damaging(1) TCGA-W3-AA1O-06 11 62574939 62574939 G A STX5 3'UTR 0.38 TCGA-W3-AA1O-06 11 63137843 63137843 C T SLC22A9 Silent p.F105F 0.44 TCGA-W3-AA1O-06 11 63978773 63978773 A G FERMT3 Missense_Mutation p.M181V 0.31 tolerated(0.54) benign(0.051) TCGA-W3-AA1O-06 11 64785942 64785942 C T ARL2 Nonsense_Mutation p.R58* 0.50 TCGA-W3-AA1O-06 11 64888293 64888293 G A FAU Intron 0.34 TCGA-W3-AA1O-06 11 65004231 65004231 G A SLC22A20 RNA 0.28 TCGA-W3-AA1O-06 11 6530274 6530274 C T DNHD1 Missense_Mutation p.P362L 0.30 probably_damaging(0.994) TCGA-W3-AA1O-06 11 66083902 66083902 G A CD248 Silent p.A199A 0.26 TCGA-W3-AA1O-06 11 66410945 66410945 C T RBM14-RBM4 Missense_Mutation p.S121F 0.43 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1O-06 11 67068573 67068573 G A ANKRD13D Missense_Mutation p.D396N 0.41 tolerated(0.05) probably_damaging(0.999) TCGA-W3-AA1O-06 11 67263694 67263694 G A PITPNM1 Missense_Mutation p.R758C 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 11 67263695 67263695 G A PITPNM1 Silent p.P757P 0.33 TCGA-W3-AA1O-06 11 68506237 68506237 G A MTL5 Missense_Mutation p.S283L 0.40 tolerated(0.07) benign(0.232) TCGA-W3-AA1O-06 11 76507084 76507084 C T TSKU Nonsense_Mutation p.Q142* 0.36 TCGA-W3-AA1O-06 11 7670444 7670444 G A PPFIBP2 Missense_Mutation p.R659Q 0.38 tolerated(0.1) probably_damaging(0.998) TCGA-W3-AA1O-06 11 76853808 76853808 C T MYO7A Silent p.I24I 0.39 TCGA-W3-AA1O-06 11 78379998 78379998 G A TENM4 Silent p.I2464I 0.36 TCGA-W3-AA1O-06 11 83497802 83497802 C T DLG2 Missense_Mutation p.E586K 0.40 deleterious(0.01) benign(0.373) TCGA-W3-AA1O-06 11 89892447 89892447 G A NAALAD2 Missense_Mutation p.G311R 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 11 99872788 99872788 G A CNTN5 Silent p.P300P 0.36 TCGA-W3-AA1O-06 12 103249068 103249068 C T PAH Silent p.K184K 0.37 TCGA-W3-AA1O-06 12 104517156 104517156 A G NFYB Missense_Mutation p.F93L 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1O-06 12 10962090 10962090 C T TAS2R9 Silent p.L195L 0.35 TCGA-W3-AA1O-06 12 113629561 113629561 C T RITA1 Missense_Mutation p.S250L 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 12 114839695 114839695 C T TBX5 Missense_Mutation p.E60K 0.31 tolerated(0.09) benign(0.145) TCGA-W3-AA1O-06 12 11546203 11546203 C T PRB2 Missense_Mutation p.G270E 0.26 deleterious(0.02) unknown(0) TCGA-W3-AA1O-06 12 118639133 118639133 C T TAOK3 Missense_Mutation p.G319R 0.36 tolerated(0.09) possibly_damaging(0.728) TCGA-W3-AA1O-06 12 120794736 120794736 C T MSI1 Missense_Mutation p.M207I 0.23 deleterious(0.01) benign(0.001) TCGA-W3-AA1O-06 12 122716937 122716937 G A VPS33A Silent p.F549F 0.34 TCGA-W3-AA1O-06 12 124317763 124317763 G A DNAH10 Missense_Mutation p.E1432K 0.43 possibly_damaging(0.804) TCGA-W3-AA1O-06 12 124323035 124323035 C T DNAH10 Silent p.I1527I 0.52 TCGA-W3-AA1O-06 12 12483716 12483716 G A MANSC1 Missense_Mutation p.H181Y 0.44 deleterious(0.03) possibly_damaging(0.756) TCGA-W3-AA1O-06 12 132395327 132395327 C T ULK1 Silent p.S310S 0.45 TCGA-W3-AA1O-06 12 133197697 133197697 C T P2RX2 Silent p.A295A 0.36 TCGA-W3-AA1O-06 12 13715941 13715941 C T GRIN2B Missense_Mutation p.V1411M 0.29 tolerated(0.12) benign(0.139) TCGA-W3-AA1O-06 12 18793468 18793468 G A PIK3C2G Missense_Mutation p.D1389N 0.42 tolerated(0.97) benign(0.02) TCGA-W3-AA1O-06 12 2676817 2676817 C T CACNA1C Silent p.F584F 0.39 TCGA-W3-AA1O-06 12 32136037 32136037 T G KIAA1551 Silent p.P716P 0.29 TCGA-W3-AA1O-06 12 32520654 32520654 G A BICD1 Missense_Mutation p.G939R 0.28 tolerated_low_confidence(0.7) benign(0.003) TCGA-W3-AA1O-06 12 32520655 32520655 G A BICD1 Missense_Mutation p.G939E 0.26 tolerated_low_confidence(0.21) benign(0.11) TCGA-W3-AA1O-06 12 33021924 33021924 C T PKP2 Silent p.R369R 0.37 TCGA-W3-AA1O-06 12 33559748 33559748 C T SYT10 Nonsense_Mutation p.W351* 0.38 TCGA-W3-AA1O-06 12 43771342 43771342 A G ADAMTS20 Silent p.S1607S 0.40 TCGA-W3-AA1O-06 12 48375916 48375916 C T COL2A1 Missense_Mutation p.G777R 0.46 probably_damaging(1) TCGA-W3-AA1O-06 12 4920123 4920123 C T KCNA6 Missense_Mutation p.P306S 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 12 4920124 4920124 C T KCNA6 Missense_Mutation p.P306L 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 12 49951788 49951788 G A KCNH3 3'UTR 0.41 TCGA-W3-AA1O-06 12 5155104 5155104 G A KCNA5 Silent p.R597R 0.20 TCGA-W3-AA1O-06 12 51851139 51851139 G A SLC4A8 Silent p.L193L 0.24 TCGA-W3-AA1O-06 12 52886475 52886475 C T KRT6A Silent p.Q166Q 0.35 TCGA-W3-AA1O-06 12 52910930 52910930 G A KRT5 Silent p.I393I 0.37 TCGA-W3-AA1O-06 12 55028651 55028651 C T LACRT 5'UTR 0.44 TCGA-W3-AA1O-06 12 55039462 55039462 C T DCD Missense_Mutation p.E43K 0.48 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-W3-AA1O-06 12 66152401 66152401 G A RPSAP52 RNA 0.14 TCGA-W3-AA1O-06 12 66152529 66152529 C T RPSAP52 RNA 0.26 TCGA-W3-AA1O-06 12 6749235 6749235 G A ACRBP Silent p.F472F 0.37 TCGA-W3-AA1O-06 12 70974842 70974842 C T PTPRB Missense_Mutation p.R851Q 0.35 deleterious(0.03) probably_damaging(0.964) TCGA-W3-AA1O-06 12 7559149 7559149 C T CD163L1 Missense_Mutation p.D356N 0.41 tolerated(0.4) possibly_damaging(0.868) TCGA-W3-AA1O-06 12 7802187 7802187 G A APOBEC1 Missense_Mutation p.L223F 0.47 deleterious_low_confidence(0.03) probably_damaging(0.972) TCGA-W3-AA1O-06 12 80747184 80747184 C T OTOGL Silent p.F1820F 0.36 TCGA-W3-AA1O-06 12 8630109 8630109 C T CLEC6A 3'UTR 0.18 TCGA-W3-AA1O-06 12 96380890 96380890 G A HAL Silent p.L336L 0.39 TCGA-W3-AA1O-06 12 97136232 97136232 G A C12orf55 Missense_Mutation p.D2363N 0.32 tolerated(0.09) benign(0.001) TCGA-W3-AA1O-06 12 97147573 97147573 G A C12orf55 Silent p.S2579S 0.37 TCGA-W3-AA1O-06 12 98849110 98849110 C T SLC9A7P1 RNA 0.18 TCGA-W3-AA1O-06 13 101795433 101795433 T A NALCN Nonsense_Mutation p.K706* 0.26 TCGA-W3-AA1O-06 13 102379160 102379160 C T FGF14 Missense_Mutation p.E142K 0.59 tolerated(0.11) benign(0.254) TCGA-W3-AA1O-06 13 111164494 111164494 C T COL4A2 Missense_Mutation p.R1699C 0.78 unknown(0) TCGA-W3-AA1O-06 13 38164572 38164572 G A POSTN Silent p.I126I 0.83 TCGA-W3-AA1O-06 13 52549103 52549103 C T ATP7B Missense_Mutation p.G85S 0.83 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 13 95364274 95364274 C T SOX21 Silent p.R10R 0.31 TCGA-W3-AA1O-06 13 96263712 96263712 G A DZIP1 Silent p.I450I 0.28 TCGA-W3-AA1O-06 14 100381012 100381012 C T EML1 Missense_Mutation p.P596L 0.57 tolerated(1) benign(0.036) TCGA-W3-AA1O-06 14 101515087 101515087 C T MIR381HG Intron 0.51 TCGA-W3-AA1O-06 14 106452966 106452966 G A IGHV1-2 Missense_Mutation p.S19F 0.38 deleterious(0.01) possibly_damaging(0.669) TCGA-W3-AA1O-06 14 106518613 106518613 G A IGHV3-7 Silent p.F46F 0.58 TCGA-W3-AA1O-06 14 106621928 106621928 C T IGHV3-16 Missense_Mutation p.R106K 0.22 tolerated_low_confidence(0.36) benign(0.068) TCGA-W3-AA1O-06 14 106667831 106667831 C T IGHV3-20 Missense_Mutation p.G34E 0.56 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-W3-AA1O-06 14 106967544 106967544 C T IGHV1-46 5'UTR 0.21 TCGA-W3-AA1O-06 14 19378115 19378115 C T OR11H12 Silent p.P174P 0.08 TCGA-W3-AA1O-06 14 20389071 20389071 C T OR4K5 Silent p.F102F 0.22 TCGA-W3-AA1O-06 14 20483322 20483322 C T OR4K14 Missense_Mutation p.E11K 0.24 deleterious(0.01) benign(0.38) TCGA-W3-AA1O-06 14 20528836 20528836 C T OR4L1 Silent p.F211F 0.26 TCGA-W3-AA1O-06 14 20586237 20586237 T A OR4K17 Nonsense_Mutation p.Y224* 0.28 TCGA-W3-AA1O-06 14 20612299 20612299 C T OR4N5 Silent p.I135I 0.52 TCGA-W3-AA1O-06 14 20692045 20692045 G T OR11H6 Silent p.G59G 0.58 TCGA-W3-AA1O-06 14 22363028 22363028 C T TRAV8-4 Silent p.F53F 0.58 TCGA-W3-AA1O-06 14 23380552 23380552 G A RBM23 Silent p.P17P 0.52 TCGA-W3-AA1O-06 14 23511480 23511480 G A PSMB11 Missense_Mutation p.G16R 0.19 tolerated(0.19) benign(0.002) TCGA-W3-AA1O-06 14 24653566 24653566 T A IPO4 Missense_Mutation p.E565D 0.54 deleterious(0.01) benign(0.39) TCGA-W3-AA1O-06 14 24710015 24710015 C T TINF2 Missense_Mutation p.R224K 0.54 tolerated_low_confidence(0.3) benign(0.14) TCGA-W3-AA1O-06 14 24885631 24885631 C T NYNRIN Missense_Mutation p.P1559L 0.62 tolerated(0.07) benign(0.059) TCGA-W3-AA1O-06 14 24885632 24885632 C T NYNRIN Silent p.P1559P 0.62 TCGA-W3-AA1O-06 14 35234364 35234364 G A BAZ1A Missense_Mutation p.R1138C 0.49 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1O-06 14 36840974 36840974 C G DPPA3P2 RNA 0.30 TCGA-W3-AA1O-06 14 45646080 45646080 G A FANCM Missense_Mutation p.E1375K 0.31 tolerated(0.4) benign(0.006) TCGA-W3-AA1O-06 14 58031078 58031078 C T SLC35F4 Silent p.K447K 0.55 TCGA-W3-AA1O-06 14 60212795 60212795 C T RTN1 Missense_Mutation p.E216K 0.33 tolerated(0.06) benign(0.007) TCGA-W3-AA1O-06 14 61112970 61112970 G A SIX1 3'UTR 0.20 TCGA-W3-AA1O-06 14 63174381 63174381 T A KCNH5 Missense_Mutation p.I938F 0.50 deleterious_low_confidence(0) benign(0.386) TCGA-W3-AA1O-06 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.55 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-W3-AA1O-06 14 63246630 63246630 A G KCNH5 Missense_Mutation p.V612A 0.28 deleterious(0.01) possibly_damaging(0.696) TCGA-W3-AA1O-06 14 64537585 64537585 C T SYNE2 Missense_Mutation p.P3552S 0.50 benign(0.36) TCGA-W3-AA1O-06 14 65289683 65289683 G A SPTB Missense_Mutation p.R44W 0.53 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 14 65289684 65289684 G A SPTB Silent p.S43S 0.53 TCGA-W3-AA1O-06 14 67859127 67859127 C T PLEK2 Silent p.K229K 0.23 TCGA-W3-AA1O-06 14 70713473 70713473 G A ADAM21P1 RNA 0.60 TCGA-W3-AA1O-06 14 70713546 70713546 C T ADAM21P1 RNA 0.53 TCGA-W3-AA1O-06 14 70924942 70924942 G A ADAM21 Silent p.V242V 0.49 TCGA-W3-AA1O-06 14 72941398 72941398 G A RGS6 Silent p.K228K 0.55 TCGA-W3-AA1O-06 14 73137927 73137927 C T DPF3 Missense_Mutation p.D331N 0.33 tolerated_low_confidence(0.12) benign(0) TCGA-W3-AA1O-06 14 73976025 73976025 G A HEATR4 Missense_Mutation p.L571F 0.55 deleterious(0) probably_damaging(0.92) TCGA-W3-AA1O-06 14 73976026 73976026 G A HEATR4 Silent p.A570A 0.55 TCGA-W3-AA1O-06 14 74060468 74060468 C T ACOT4 Nonsense_Mutation p.R174* 0.33 TCGA-W3-AA1O-06 14 75514422 75514422 G A MLH3 Missense_Mutation p.T646I 0.59 tolerated(0.14) benign(0.005) TCGA-W3-AA1O-06 14 80164216 80164216 T G NRXN3 Missense_Mutation p.M914R 0.49 tolerated(0.1) benign(0) TCGA-W3-AA1O-06 14 80164222 80164222 C T NRXN3 Missense_Mutation p.T916I 0.48 tolerated(0.17) benign(0.001) TCGA-W3-AA1O-06 14 90429680 90429680 C T TDP1 Silent p.P74P 0.25 TCGA-W3-AA1O-06 14 90650495 90650495 C T KCNK13 Silent p.I125I 0.21 TCGA-W3-AA1O-06 14 91805757 91805757 G A CCDC88C Missense_Mutation p.P225L 0.52 deleterious(0.01) probably_damaging(0.955) TCGA-W3-AA1O-06 14 92264694 92264694 C T TC2N Silent p.V229V 0.51 TCGA-W3-AA1O-06 14 93717836 93717836 G A BTBD7 Missense_Mutation p.P639S 0.50 tolerated(0.15) probably_damaging(0.987) TCGA-W3-AA1O-06 14 94039065 94039065 C T UNC79 Missense_Mutation p.P481L 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1O-06 14 94964730 94964730 T C SERPINA12 Missense_Mutation p.N2S 0.17 tolerated(0.1) possibly_damaging(0.505) TCGA-W3-AA1O-06 14 95035853 95035853 C T SERPINA4 Missense_Mutation p.P402L 0.47 deleterious(0.03) possibly_damaging(0.534) TCGA-W3-AA1O-06 14 95088717 95088717 G A SERPINA3 Silent p.S319S 0.32 TCGA-W3-AA1O-06 14 96730112 96730112 A C BDKRB1 Missense_Mutation p.E31D 0.55 tolerated(0.48) benign(0.009) TCGA-W3-AA1O-06 15 101120809 101120809 G A LINS Missense_Mutation p.S80F 0.36 tolerated(0.67) benign(0.009) TCGA-W3-AA1O-06 15 23932446 23932446 G A NDN 5'UTR 0.50 TCGA-W3-AA1O-06 15 25227177 25227177 G A SNRPN 3'Flank 0.54 TCGA-W3-AA1O-06 15 25442645 25442645 C T SNORD115-14 3'Flank 0.54 TCGA-W3-AA1O-06 15 40590118 40590118 G A PLCB2 Missense_Mutation p.P400S 0.51 deleterious(0.01) benign(0.182) TCGA-W3-AA1O-06 15 40627620 40627620 G A C15orf52 Silent p.S448S 0.55 TCGA-W3-AA1O-06 15 41068488 41068488 G A DNAJC17 Silent p.I128I 0.44 TCGA-W3-AA1O-06 15 42166654 42166654 G A SPTBN5 Silent p.L1509L 0.66 TCGA-W3-AA1O-06 15 42185507 42185507 C T SPTBN5 Nonsense_Mutation p.W63* 0.58 TCGA-W3-AA1O-06 15 44921521 44921521 G A SPG11 Missense_Mutation p.P601S 0.26 tolerated(0.26) benign(0.025) TCGA-W3-AA1O-06 15 45398502 45398502 C T DUOX2 Missense_Mutation p.E657K 0.10 tolerated(0.22) benign(0.01) TCGA-W3-AA1O-06 15 45556875 45556875 C T SLC28A2 Missense_Mutation p.S204L 0.60 deleterious(0.02) benign(0) TCGA-W3-AA1O-06 15 48591455 48591455 G A SLC12A1 Missense_Mutation p.E1027K 0.19 tolerated(0.19) benign(0.089) TCGA-W3-AA1O-06 15 57730993 57730993 C T CGNL1 Missense_Mutation p.P266S 0.16 tolerated(0.8) benign(0.004) TCGA-W3-AA1O-06 15 62945392 62945392 C T TLN2 Silent p.I132I 0.60 TCGA-W3-AA1O-06 15 66644513 66644513 G A TIPIN Missense_Mutation p.P56S 0.22 tolerated(0.09) benign(0.015) TCGA-W3-AA1O-06 15 68631926 68631926 C T ITGA11 Silent p.K396K 0.25 TCGA-W3-AA1O-06 15 72197304 72197304 G A MYO9A Missense_Mutation p.P910L 0.50 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 15 74336984 74336984 G A PML Missense_Mutation p.G762S 0.55 tolerated(0.08) benign(0.275) TCGA-W3-AA1O-06 15 74625065 74625065 G A CCDC33 Missense_Mutation p.G606E 0.47 deleterious(0.03) benign(0.362) TCGA-W3-AA1O-06 15 75091763 75091763 C T CSK Silent p.I131I 0.56 TCGA-W3-AA1O-06 15 76430189 76430189 G A C15orf27 Silent p.A60A 0.34 TCGA-W3-AA1O-06 15 77228053 77228053 C T RCN2 Missense_Mutation p.S146F 0.56 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1O-06 15 83932153 83932153 G A BNC1 Missense_Mutation p.S617F 0.23 deleterious(0.02) benign(0.11) TCGA-W3-AA1O-06 15 85327874 85327874 C T ZNF592 Silent p.I656I 0.51 TCGA-W3-AA1O-06 15 90328627 90328627 C T ANPEP Missense_Mutation p.E953K 0.56 tolerated(0.13) benign(0.002) TCGA-W3-AA1O-06 15 90892230 90892230 C T GABARAPL3 Missense_Mutation p.R67K 0.42 deleterious(0.02) benign(0.133) TCGA-W3-AA1O-06 16 11000635 11000635 G A CIITA Nonsense_Mutation p.W429* 0.38 TCGA-W3-AA1O-06 16 1265371 1265371 C T CACNA1H Silent p.A1723A 0.32 TCGA-W3-AA1O-06 16 15961332 15961332 C T FOPNL Missense_Mutation p.E164K 0.38 tolerated_low_confidence(0.06) benign(0.039) TCGA-W3-AA1O-06 16 16177379 16177379 C T ABCC1 Missense_Mutation p.R758W 0.40 deleterious(0.01) benign(0.009) TCGA-W3-AA1O-06 16 21053394 21053394 C T DNAH3 Missense_Mutation p.M1531I 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 16 21991973 21991973 C T UQCRC2 Silent p.S410S 0.33 TCGA-W3-AA1O-06 16 23079730 23079730 G T USP31 Silent p.A1232A 0.30 TCGA-W3-AA1O-06 16 23701397 23701397 C T PLK1 3'UTR 0.35 TCGA-W3-AA1O-06 16 242975 242975 G A LUC7L Missense_Mutation p.R243C 0.34 deleterious(0.02) unknown(0) TCGA-W3-AA1O-06 16 27454413 27454413 G A IL21R Silent p.R161R 0.30 TCGA-W3-AA1O-06 16 27765511 27765511 C T KIAA0556 Silent p.L1190L 0.34 TCGA-W3-AA1O-06 16 28944399 28944399 C T CD19 Missense_Mutation p.P175S 0.44 tolerated_low_confidence(0.13) benign(0.09) TCGA-W3-AA1O-06 16 28996686 28996686 C T LAT Intron 0.52 TCGA-W3-AA1O-06 16 30102263 30102263 G A TBX6 Missense_Mutation p.P57S 0.22 tolerated(0.12) benign(0.003) TCGA-W3-AA1O-06 16 3064067 3064067 C T CLDN9 3'UTR 0.38 TCGA-W3-AA1O-06 16 3139869 3139869 G A ZSCAN10 Silent p.F467F 0.50 TCGA-W3-AA1O-06 16 31424451 31424451 G A ITGAD Missense_Mutation p.S627N 0.32 tolerated(0.19) benign(0.009) TCGA-W3-AA1O-06 16 31498829 31498829 C T SLC5A2 Intron 0.33 TCGA-W3-AA1O-06 16 3165365 3165365 C T ZNF205 Missense_Mutation p.R23C 0.35 deleterious_low_confidence(0.04) benign(0.306) TCGA-W3-AA1O-06 16 31926846 31926846 C T ZNF267 Missense_Mutation p.H426Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1O-06 16 33020671 33020671 G A IGHV3OR16-8 Missense_Mutation p.G27R 0.21 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-W3-AA1O-06 16 33020672 33020672 G A IGHV3OR16-8 Missense_Mutation p.G27E 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.863) TCGA-W3-AA1O-06 16 3820653 3820653 G A CREBBP Missense_Mutation p.P933L 0.34 unknown(0) TCGA-W3-AA1O-06 16 4749057 4749057 T G ANKS3 Missense_Mutation p.I469L 0.32 deleterious(0) benign(0.209) TCGA-W3-AA1O-06 16 50746095 50746095 C T NOD2 Missense_Mutation p.A758V 0.65 deleterious(0.02) probably_damaging(0.976) TCGA-W3-AA1O-06 16 56970657 56970657 C T HERPUD1 Missense_Mutation p.S120F 0.74 tolerated(0.06) possibly_damaging(0.563) TCGA-W3-AA1O-06 16 62055175 62055175 C T CDH8 Missense_Mutation p.E45K 0.42 tolerated(0.86) benign(0.014) TCGA-W3-AA1O-06 16 67683183 67683183 G A RLTPR Missense_Mutation p.R572Q 0.32 deleterious(0.01) benign(0.369) TCGA-W3-AA1O-06 16 67768876 67768876 G A RANBP10 Missense_Mutation p.P221S 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 16 68025833 68025833 G A DPEP2 Silent p.G190G 0.46 TCGA-W3-AA1O-06 16 70843862 70843862 C T HYDIN Missense_Mutation p.G4903R 0.39 probably_damaging(0.991) TCGA-W3-AA1O-06 16 71913843 71913843 G A ZNF821 Missense_Mutation p.R3C 0.43 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-W3-AA1O-06 16 77850940 77850940 G A VAT1L Missense_Mutation p.G119E 0.42 tolerated(0.22) possibly_damaging(0.609) TCGA-W3-AA1O-06 16 81181901 81181901 G T PKD1L2 RNA 0.27 TCGA-W3-AA1O-06 16 83711840 83711840 C T CDH13 Missense_Mutation p.H485Y 0.27 tolerated(0.55) probably_damaging(0.925) TCGA-W3-AA1O-06 16 84228872 84228872 G T ADAD2 Missense_Mutation p.G317V 0.22 tolerated_low_confidence(0.13) benign(0.211) TCGA-W3-AA1O-06 16 84270966 84270966 C T KCNG4 Silent p.R42R 0.34 TCGA-W3-AA1O-06 16 85953781 85953781 A C IRF8 Missense_Mutation p.E352A 0.23 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 16 89813052 89813052 C T FANCA Missense_Mutation p.M1151I 0.36 tolerated(0.19) benign(0.017) TCGA-W3-AA1O-06 17 11696886 11696886 G A DNAH9 Missense_Mutation p.E2710K 0.85 probably_damaging(0.998) TCGA-W3-AA1O-06 17 16593683 16593683 G A CCDC144A 5'UTR 0.71 TCGA-W3-AA1O-06 17 16722465 16722465 C T AC022596.6 RNA 0.48 TCGA-W3-AA1O-06 17 17723483 17723483 G A SREBF1 Silent p.S178S 0.77 TCGA-W3-AA1O-06 17 19015773 19015773 G A SNORD3D RNA 0.11 TCGA-W3-AA1O-06 17 26966636 26966636 C T KIAA0100 Missense_Mutation p.R347H 0.11 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 17 33462312 33462312 G A NLE1 Silent p.A390A 0.69 TCGA-W3-AA1O-06 17 33462313 33462313 G A NLE1 Missense_Mutation p.A390V 0.69 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 17 35550347 35550347 G A ACACA Missense_Mutation p.P1390S 0.10 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 17 38643412 38643412 G A TNS4 Silent p.P388P 0.08 TCGA-W3-AA1O-06 17 38950145 38950145 C T KRT28 Missense_Mutation p.D378N 0.73 tolerated(0.15) benign(0.176) TCGA-W3-AA1O-06 17 39114819 39114819 C T KRT39 3'UTR 0.08 TCGA-W3-AA1O-06 17 39593788 39593788 G A KRT38 Missense_Mutation p.P416L 0.70 deleterious(0.03) probably_damaging(0.981) TCGA-W3-AA1O-06 17 39724613 39724613 C T KRT9 Missense_Mutation p.E399K 0.06 tolerated(0.11) probably_damaging(0.999) TCGA-W3-AA1O-06 17 39915096 39915096 C T JUP Silent p.L508L 0.88 TCGA-W3-AA1O-06 17 41003347 41003347 C T AOC3 5'UTR 0.05 TCGA-W3-AA1O-06 17 41108536 41108536 G A AARSD1 Missense_Mutation p.P144L 0.74 deleterious(0.02) benign(0.194) TCGA-W3-AA1O-06 17 41108537 41108537 G A AARSD1 Missense_Mutation p.P144S 0.74 deleterious(0.03) benign(0.015) TCGA-W3-AA1O-06 17 42849644 42849644 C T ADAM11 Missense_Mutation p.P185S 0.64 tolerated(0.23) benign(0.105) TCGA-W3-AA1O-06 17 43037510 43037510 G A C1QL1 3'UTR 0.80 TCGA-W3-AA1O-06 17 4463708 4463708 G A GGT6 Silent p.L37L 0.70 TCGA-W3-AA1O-06 17 47656029 47656029 C T NXPH3 Silent p.P42P 0.05 TCGA-W3-AA1O-06 17 4836048 4836048 C T GP1BA Missense_Mutation p.T50I 0.80 deleterious(0.02) probably_damaging(0.98) TCGA-W3-AA1O-06 17 48697151 48697151 C T CACNA1G Silent p.F1963F 0.85 TCGA-W3-AA1O-06 17 49710877 49710877 C T CA10 Silent p.K308K 0.74 TCGA-W3-AA1O-06 17 53014597 53014597 C T TOM1L1 Intron 0.72 TCGA-W3-AA1O-06 17 54452025 54452025 G A ANKFN1 Missense_Mutation p.S290N 0.08 tolerated(0.23) benign(0.085) TCGA-W3-AA1O-06 17 56350881 56350881 G A MPO Silent p.I505I 0.05 TCGA-W3-AA1O-06 17 60814049 60814049 C T MARCH10 Missense_Mutation p.E394K 0.81 tolerated(0.06) benign(0.037) TCGA-W3-AA1O-06 17 60814522 60814522 G A MARCH10 Missense_Mutation p.S236F 0.71 deleterious(0.01) possibly_damaging(0.534) TCGA-W3-AA1O-06 17 61498462 61498462 G A TANC2 Missense_Mutation p.G1707S 0.70 tolerated_low_confidence(0.21) possibly_damaging(0.784) TCGA-W3-AA1O-06 17 61498463 61498463 G A TANC2 Missense_Mutation p.G1707D 0.69 tolerated_low_confidence(0.07) probably_damaging(0.973) TCGA-W3-AA1O-06 17 62854986 62854986 G A LRRC37A3 Missense_Mutation p.P1574S 0.72 deleterious(0) possibly_damaging(0.878) TCGA-W3-AA1O-06 17 66981082 66981082 C T ABCA9 Silent p.V1441V 0.71 TCGA-W3-AA1O-06 17 71375657 71375657 C T SDK2 Silent p.R1598R 0.07 TCGA-W3-AA1O-06 17 72436587 72436587 C T GPRC5C Silent p.F269F 0.71 TCGA-W3-AA1O-06 17 73914132 73914132 G A FBF1 Missense_Mutation p.H741Y 0.05 deleterious(0) benign(0.04) TCGA-W3-AA1O-06 17 74928746 74928746 C T MGAT5B Silent p.S448S 0.04 TCGA-W3-AA1O-06 17 7579358 7579358 C G TP53 Missense_Mutation p.R110P 0.76 deleterious(0.03) probably_damaging(0.982) TCGA-W3-AA1O-06 17 7722677 7722677 G A DNAH2 Missense_Mutation p.E3656K 0.74 benign(0.297) TCGA-W3-AA1O-06 17 80273194 80273194 G A CD7 3'UTR 0.07 TCGA-W3-AA1O-06 17 8770921 8770921 C T PIK3R6 5'UTR 0.64 TCGA-W3-AA1O-06 18 14524929 14524929 C T POTEC Missense_Mutation p.E394K 0.42 deleterious(0.03) benign(0.182) TCGA-W3-AA1O-06 18 21533021 21533021 C T LAMA3 Silent p.I3268I 0.43 TCGA-W3-AA1O-06 18 55240562 55240562 C G FECH Missense_Mutation p.G83A 0.31 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1O-06 18 61383289 61383289 G A SERPINB11 Silent p.E126E 0.42 TCGA-W3-AA1O-06 18 63491899 63491899 C T CDH7 Silent p.V271V 0.43 TCGA-W3-AA1O-06 18 65179410 65179410 C T DSEL Nonsense_Mutation p.W822* 0.26 TCGA-W3-AA1O-06 18 70526084 70526084 G A NETO1 Missense_Mutation p.S149L 0.50 tolerated(0.24) benign(0.075) TCGA-W3-AA1O-06 19 10402383 10402383 G A ICAM5 Missense_Mutation p.D191N 0.33 tolerated(0.07) probably_damaging(0.969) TCGA-W3-AA1O-06 19 11141426 11141426 C T SMARCA4 Missense_Mutation p.R1135W 0.33 probably_damaging(1) TCGA-W3-AA1O-06 19 14574771 14574771 C T PKN1 Missense_Mutation p.R549W 0.40 tolerated(0.06) probably_damaging(0.913) TCGA-W3-AA1O-06 19 14991701 14991701 G A OR7A17 Missense_Mutation p.S156F 0.30 deleterious_low_confidence(0) benign(0.25) TCGA-W3-AA1O-06 19 15079186 15079186 G A SLC1A6 Silent p.S159S 0.50 TCGA-W3-AA1O-06 19 16487970 16487970 C T EPS15L1 Silent p.P781P 0.33 TCGA-W3-AA1O-06 19 16793237 16793237 G A TMEM38A Missense_Mutation p.G158S 0.53 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 19 17088181 17088181 G A CPAMD8 Silent p.N632N 0.46 TCGA-W3-AA1O-06 19 17321170 17321170 C T MYO9B Missense_Mutation p.S1926F 0.29 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA1O-06 19 17322819 17322819 C T MYO9B 3'UTR 0.67 TCGA-W3-AA1O-06 19 17831827 17831827 C T MAP1S Silent p.T67T 0.30 TCGA-W3-AA1O-06 19 19655959 19655959 G A CILP2 Missense_Mutation p.G869S 0.38 tolerated(0.11) possibly_damaging(0.507) TCGA-W3-AA1O-06 19 22272077 22272077 C T ZNF257 Missense_Mutation p.H509Y 0.21 deleterious(0.02) possibly_damaging(0.726) TCGA-W3-AA1O-06 19 22952122 22952122 G A ZNF99 Missense_Mutation p.S3L 0.34 tolerated(0.78) benign(0.159) TCGA-W3-AA1O-06 19 2732732 2732732 G A SLC39A3 3'UTR 0.52 TCGA-W3-AA1O-06 19 3005964 3005964 G A TLE2 Silent p.N501N 0.33 TCGA-W3-AA1O-06 19 30935262 30935262 G A ZNF536 Missense_Mutation p.E265K 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-W3-AA1O-06 19 35941507 35941507 C T FFAR2 Silent p.S297S 0.43 TCGA-W3-AA1O-06 19 36211970 36211970 C T KMT2B Missense_Mutation p.P574L 0.26 benign(0.339) TCGA-W3-AA1O-06 19 36211971 36211971 C T KMT2B Silent p.P574P 0.28 TCGA-W3-AA1O-06 19 36216399 36216399 G T KMT2B Missense_Mutation p.C1221F 0.36 benign(0.012) TCGA-W3-AA1O-06 19 3624100 3624100 C T CACTIN Silent p.R76R 0.40 TCGA-W3-AA1O-06 19 36330164 36330164 C T NPHS1 Silent p.G1028G 0.42 TCGA-W3-AA1O-06 19 36349608 36349608 C T KIRREL2 Missense_Mutation p.P122S 0.55 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1O-06 19 39787498 39787498 G A IFNL1 Silent p.G75G 0.36 TCGA-W3-AA1O-06 19 40711065 40711065 C T MAP3K10 Silent p.F350F 0.37 TCGA-W3-AA1O-06 19 41386051 41386051 A G CYP2A7 Missense_Mutation p.F198L 0.80 tolerated(0.07) benign(0.076) TCGA-W3-AA1O-06 19 42754036 42754036 A C ERF Missense_Mutation p.F106V 0.36 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 19 4306270 4306270 G A FSD1 Missense_Mutation p.E63K 0.32 tolerated(0.12) benign(0.439) TCGA-W3-AA1O-06 19 43428850 43428850 G A PSG7 3'UTR 0.13 TCGA-W3-AA1O-06 19 43428937 43428937 G A PSG7 3'UTR 0.23 TCGA-W3-AA1O-06 19 43969748 43969748 C T LYPD3 5'UTR 0.33 TCGA-W3-AA1O-06 19 43969749 43969749 C T LYPD3 5'UTR 0.35 TCGA-W3-AA1O-06 19 4513511 4513511 A G PLIN4 Missense_Mutation p.V140A 0.33 tolerated(0.1) benign(0.068) TCGA-W3-AA1O-06 19 4529094 4529094 C T PLIN5 Missense_Mutation p.E171K 0.31 tolerated(0.07) benign(0.345) TCGA-W3-AA1O-06 19 46664340 46664340 C T IGFL2 Missense_Mutation p.P130S 0.40 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-W3-AA1O-06 19 47423140 47423140 C T ARHGAP35 Missense_Mutation p.P403L 0.24 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 19 48565286 48565286 G A PLA2G4C Missense_Mutation p.S419F 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 19 49377544 49377544 G A PPP1R15A Missense_Mutation p.E352K 0.30 deleterious(0.01) possibly_damaging(0.899) TCGA-W3-AA1O-06 19 49685891 49685891 C T TRPM4 Silent p.F440F 0.29 TCGA-W3-AA1O-06 19 49842796 49842796 C T CD37 Intron 0.41 TCGA-W3-AA1O-06 19 49999638 49999638 C T RPS11 5'UTR 0.28 TCGA-W3-AA1O-06 19 50099515 50099515 C T PRR12 Silent p.F641F 0.46 TCGA-W3-AA1O-06 19 50386036 50386036 C T TBC1D17 Missense_Mutation p.R272W 0.38 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 19 50881418 50881418 C T NR1H2 Missense_Mutation p.P65L 0.26 deleterious(0.02) benign(0.175) TCGA-W3-AA1O-06 19 53384774 53384774 G A ZNF320 Missense_Mutation p.S202L 0.34 deleterious(0.05) benign(0.175) TCGA-W3-AA1O-06 19 54310805 54310805 C T NLRP12 Silent p.G729G 0.32 TCGA-W3-AA1O-06 19 54823298 54823298 C T LILRA5 Missense_Mutation p.G82E 0.41 tolerated(0.06) probably_damaging(0.961) TCGA-W3-AA1O-06 19 55106311 55106311 C T LILRA1 Silent p.P84P 0.28 TCGA-W3-AA1O-06 19 55253721 55253721 C T KIR2DL3 Silent p.I122I 0.69 TCGA-W3-AA1O-06 19 56515139 56515139 C T NLRP5 Silent p.F40F 0.26 TCGA-W3-AA1O-06 19 5684885 5684885 C T HSD11B1L Silent p.F14F 0.55 TCGA-W3-AA1O-06 19 57065401 57065401 G A ZFP28 Missense_Mutation p.G416E 0.32 tolerated(0.13) probably_damaging(0.992) TCGA-W3-AA1O-06 19 57175048 57175048 G A ZNF835 Missense_Mutation p.P507S 0.39 tolerated_low_confidence(0.5) benign(0.003) TCGA-W3-AA1O-06 19 57646543 57646543 C T ZIM3 Missense_Mutation p.E388K 0.33 deleterious(0.05) benign(0.043) TCGA-W3-AA1O-06 19 57840577 57840577 G A ZNF543 Missense_Mutation p.E583K 0.40 tolerated(0.32) benign(0.003) TCGA-W3-AA1O-06 19 58565266 58565266 G A ZSCAN1 Silent p.R358R 0.36 TCGA-W3-AA1O-06 19 58579358 58579358 A G ZNF135 Silent p.A526A 0.35 TCGA-W3-AA1O-06 19 6141604 6141604 A G ACSBG2 Missense_Mutation p.D17G 0.35 tolerated(0.13) benign(0.003) TCGA-W3-AA1O-06 19 6664820 6664820 G A TNFSF14 3'UTR 0.30 TCGA-W3-AA1O-06 19 8562682 8562682 G A PRAM1 Silent p.P514P 0.36 TCGA-W3-AA1O-06 19 9002591 9002591 C T MUC16 Missense_Mutation p.E13409K 0.32 probably_damaging(0.969) TCGA-W3-AA1O-06 19 9058427 9058427 G A MUC16 Silent p.S9673S 0.31 TCGA-W3-AA1O-06 19 9062610 9062610 G A MUC16 Missense_Mutation p.S8279F 0.22 unknown(0) TCGA-W3-AA1O-06 19 9070067 9070067 G A MUC16 Silent p.I5793I 0.28 TCGA-W3-AA1O-06 19 9071073 9071073 G A MUC16 Missense_Mutation p.T5458I 0.46 unknown(0) TCGA-W3-AA1O-06 19 9071866 9071866 C T MUC16 Missense_Mutation p.E5194K 0.30 unknown(0) TCGA-W3-AA1O-06 19 9085237 9085237 G A MUC16 Missense_Mutation p.S2193F 0.25 unknown(0) TCGA-W3-AA1O-06 19 9089551 9089551 C T MUC16 Missense_Mutation p.G755E 0.34 unknown(0) TCGA-W3-AA1O-06 19 9090099 9090099 C T MUC16 Silent p.L572L 0.44 TCGA-W3-AA1O-06 1 100547779 100547779 G A HIAT1 3'UTR 0.63 TCGA-W3-AA1O-06 1 103461585 103461585 G A COL11A1 Missense_Mutation p.P752L 0.61 unknown(0) TCGA-W3-AA1O-06 1 114646311 114646311 G A SYT6 Silent p.S283S 0.63 TCGA-W3-AA1O-06 1 11579476 11579476 G A PTCHD2 Missense_Mutation p.E652K 0.24 tolerated(0.13) benign(0.3) TCGA-W3-AA1O-06 1 119427535 119427535 G A TBX15 Silent p.L437L 0.25 TCGA-W3-AA1O-06 1 119964548 119964548 G A HSD3B2 Missense_Mutation p.E142K 0.51 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1O-06 1 12785303 12785303 G A AADACL3 Silent p.V131V 0.23 TCGA-W3-AA1O-06 1 12854638 12854638 A G PRAMEF1 Missense_Mutation p.I288V 0.29 deleterious(0.01) possibly_damaging(0.608) TCGA-W3-AA1O-06 1 13742999 13742999 G A PRAMEF20 Missense_Mutation p.R63H 0.51 tolerated(0.26) benign(0.016) TCGA-W3-AA1O-06 1 145281387 145281387 C T NOTCH2NL Missense_Mutation p.T106I 0.07 tolerated(0.19) benign(0.006) TCGA-W3-AA1O-06 1 147231361 147231361 G A GJA5 5'UTR 0.27 TCGA-W3-AA1O-06 1 147400573 147400573 G A GPR89B 5'UTR 0.56 TCGA-W3-AA1O-06 1 147408738 147408738 C T GPR89B Intron 0.45 TCGA-W3-AA1O-06 1 150482705 150482705 C T ECM1 Intron 0.52 TCGA-W3-AA1O-06 1 150482706 150482706 C T ECM1 Intron 0.54 TCGA-W3-AA1O-06 1 152128860 152128860 G A RPTN Missense_Mutation p.H239Y 0.26 tolerated(0.08) possibly_damaging(0.703) TCGA-W3-AA1O-06 1 152287178 152287178 C T FLG Missense_Mutation p.D62N 0.31 benign(0.058) TCGA-W3-AA1O-06 1 152749056 152749057 - T LCE1F Frame_Shift_Ins p.G71Wfs*14 0.27 TCGA-W3-AA1O-06 1 154901593 154901593 C T PMVK Silent p.R73R 0.40 TCGA-W3-AA1O-06 1 154901594 154901594 C T PMVK Missense_Mutation p.R73Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 1 158369218 158369218 G A OR10T2 Silent p.F13F 0.74 TCGA-W3-AA1O-06 1 158725302 158725302 G A OR6K6 Missense_Mutation p.E233K 0.22 tolerated(0.42) benign(0.035) TCGA-W3-AA1O-06 1 158913709 158913709 C T PYHIN1 Nonsense_Mutation p.R378* 0.58 TCGA-W3-AA1O-06 1 159779306 159779306 C T FCRL6 Missense_Mutation p.S240F 0.25 tolerated(0.61) possibly_damaging(0.502) TCGA-W3-AA1O-06 1 160254900 160254900 C T PEX19 Silent p.E5E 0.52 TCGA-W3-AA1O-06 1 160589610 160589610 C T SLAMF1 Missense_Mutation p.E274K 0.55 tolerated(0.06) possibly_damaging(0.46) TCGA-W3-AA1O-06 1 166974559 166974559 T G MAEL Missense_Mutation p.F257C 0.26 tolerated(0.07) possibly_damaging(0.84) TCGA-W3-AA1O-06 1 167097468 167097468 G A DUSP27 Missense_Mutation p.E1034K 0.60 deleterious(0) possibly_damaging(0.548) TCGA-W3-AA1O-06 1 169292458 169292458 C T NME7 Missense_Mutation p.D59N 0.19 deleterious(0.03) possibly_damaging(0.573) TCGA-W3-AA1O-06 1 169388099 169388099 T C CCDC181 Intron 0.17 TCGA-W3-AA1O-06 1 170513889 170513889 C T GORAB Nonsense_Mutation p.Q214* 0.18 TCGA-W3-AA1O-06 1 172002339 172002339 C T DNM3 Silent p.S261S 0.64 TCGA-W3-AA1O-06 1 176905332 176905332 G A ASTN1 Intron 0.12 TCGA-W3-AA1O-06 1 181740494 181740494 C T CACNA1E Silent p.F1649F 0.75 TCGA-W3-AA1O-06 1 183191308 183191308 C T LAMC2 Missense_Mutation p.S242L 0.66 tolerated(0.33) benign(0.146) TCGA-W3-AA1O-06 1 186647458 186647458 A T PTGS2 Missense_Mutation p.L131H 0.16 tolerated(0.26) possibly_damaging(0.767) TCGA-W3-AA1O-06 1 196197285 196197285 C T KCNT2 3'UTR 0.25 TCGA-W3-AA1O-06 1 196309512 196309512 C T KCNT2 Missense_Mutation p.G581E 0.15 tolerated(0.08) probably_damaging(0.962) TCGA-W3-AA1O-06 1 196748376 196748376 G A CFHR3 Missense_Mutation p.G48E 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-W3-AA1O-06 1 196883739 196883739 G A CFHR4 Missense_Mutation p.G431E 0.14 deleterious(0.03) possibly_damaging(0.897) TCGA-W3-AA1O-06 1 196918669 196918669 G A CFHR2 Missense_Mutation p.G48E 0.60 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 1 196953220 196953220 C T CFHR5 Missense_Mutation p.S128L 0.27 tolerated(0.11) benign(0.278) TCGA-W3-AA1O-06 1 198247166 198247166 G A NEK7 Missense_Mutation p.E150K 0.53 tolerated(0.24) benign(0.016) TCGA-W3-AA1O-06 1 200960788 200960788 C T KIF21B Silent p.Q817Q 0.60 TCGA-W3-AA1O-06 1 202245493 202245493 C T LGR6 Missense_Mutation p.S163F 0.18 tolerated(0.06) probably_damaging(0.981) TCGA-W3-AA1O-06 1 203743595 203743595 C T LAX1 Missense_Mutation p.P328L 0.33 tolerated(0.75) benign(0.113) TCGA-W3-AA1O-06 1 205070752 205070752 G - RBBP5 Frame_Shift_Del p.S203* 0.36 TCGA-W3-AA1O-06 1 206628336 206628336 C T SRGAP2 Missense_Mutation p.H739Y 0.19 deleterious(0.03) benign(0.007) TCGA-W3-AA1O-06 1 207244866 207244866 A C PFKFB2 Missense_Mutation p.E433A 0.62 possibly_damaging(0.715) TCGA-W3-AA1O-06 1 207643198 207643198 A T CR2 Missense_Mutation p.T326S 0.66 deleterious(0.02) possibly_damaging(0.767) TCGA-W3-AA1O-06 1 211836703 211836703 G A NEK2 3'UTR 0.16 TCGA-W3-AA1O-06 1 214815502 214815502 C T CENPF Missense_Mutation p.S1274L 0.14 benign(0.275) TCGA-W3-AA1O-06 1 215848455 215848455 G A USH2A Silent p.L4266L 0.66 TCGA-W3-AA1O-06 1 216373002 216373002 G A USH2A Missense_Mutation p.H1260Y 0.63 benign(0.008) TCGA-W3-AA1O-06 1 220440278 220440278 G A RAB3GAP2 Intron 0.56 TCGA-W3-AA1O-06 1 222721225 222721225 G A HHIPL2 Silent p.P54P 0.18 TCGA-W3-AA1O-06 1 222801379 222801379 C T MIA3 Silent p.L273L 0.15 TCGA-W3-AA1O-06 1 223396759 223396759 C T SUSD4 Missense_Mutation p.E426K 0.13 tolerated(0.08) benign(0.223) TCGA-W3-AA1O-06 1 223933098 223933098 G A CAPN2 Missense_Mutation p.G173R 0.12 tolerated(0.28) benign(0.036) TCGA-W3-AA1O-06 1 223933099 223933099 G A CAPN2 Missense_Mutation p.G173E 0.12 deleterious(0.03) benign(0.416) TCGA-W3-AA1O-06 1 228509346 228509346 G A OBSCN Missense_Mutation p.G5892D 0.26 probably_damaging(1) TCGA-W3-AA1O-06 1 229773431 229773431 G A URB2 Missense_Mutation p.R1024K 0.13 tolerated(0.16) benign(0.016) TCGA-W3-AA1O-06 1 23191569 23191569 C T EPHB2 Silent p.T389T 0.26 TCGA-W3-AA1O-06 1 240370746 240370746 C T FMN2 Silent p.P878P 0.65 TCGA-W3-AA1O-06 1 241767732 241767732 C T OPN3 Missense_Mutation p.G175R 0.61 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 1 2430535 2430535 C T PLCH2 Missense_Mutation p.T789I 0.61 tolerated(0.06) benign(0.039) TCGA-W3-AA1O-06 1 2430536 2430536 C T PLCH2 Silent p.T789T 0.61 TCGA-W3-AA1O-06 1 247769183 247769183 C T OR2G3 Missense_Mutation p.A99V 0.16 tolerated(1) benign(0.001) TCGA-W3-AA1O-06 1 248004720 248004720 G A OR11L1 Missense_Mutation p.S160F 0.14 tolerated(0.38) possibly_damaging(0.541) TCGA-W3-AA1O-06 1 248085197 248085197 G C OR2T8 Missense_Mutation p.S293T 0.64 deleterious(0.02) benign(0.049) TCGA-W3-AA1O-06 1 26515118 26515118 C T CNKSR1 Silent p.L540L 0.27 TCGA-W3-AA1O-06 1 26515119 26515119 C T CNKSR1 Missense_Mutation p.H541Y 0.33 tolerated(0.55) benign(0.333) TCGA-W3-AA1O-06 1 27087501 27087501 T A ARID1A Missense_Mutation p.I692N 0.44 unknown(0) TCGA-W3-AA1O-06 1 27087503 27087503 C T ARID1A Nonsense_Mutation p.R693* 0.44 TCGA-W3-AA1O-06 1 27226780 27226780 G A GPATCH3 Missense_Mutation p.R52W 0.57 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 1 27624548 27624548 C T WDTC1 Missense_Mutation p.P392L 0.34 deleterious(0.01) possibly_damaging(0.856) TCGA-W3-AA1O-06 1 27697441 27697441 C T FCN3 Missense_Mutation p.G139D 0.25 deleterious(0.03) benign(0.041) TCGA-W3-AA1O-06 1 27697442 27697442 C T FCN3 Missense_Mutation p.G139S 0.25 deleterious(0.04) benign(0.1) TCGA-W3-AA1O-06 1 2939251 2939251 C T ACTRT2 Missense_Mutation p.P334L 0.56 deleterious(0.01) possibly_damaging(0.904) TCGA-W3-AA1O-06 1 32741631 32741631 C T LCK Missense_Mutation p.P200S 0.20 tolerated(1) benign(0.001) TCGA-W3-AA1O-06 1 33502423 33502423 G A AK2 Missense_Mutation p.P3S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-W3-AA1O-06 1 34238347 34238347 C T CSMD2 Missense_Mutation p.E517K 0.52 tolerated(0.14) benign(0.102) TCGA-W3-AA1O-06 1 36752382 36752382 C T THRAP3 Missense_Mutation p.S184F 0.25 deleterious(0) unknown(0) TCGA-W3-AA1O-06 1 3761490 3761490 G A CEP104 Silent p.L183L 0.16 TCGA-W3-AA1O-06 1 41608559 41608559 G A SCMH1 Missense_Mutation p.P125S 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1O-06 1 44069486 44069486 A T PTPRF Missense_Mutation p.Y888F 0.36 deleterious(0) probably_damaging(0.91) TCGA-W3-AA1O-06 1 47016801 47016801 G A KNCN Silent p.I29I 0.54 TCGA-W3-AA1O-06 1 47351161 47351161 G A CYP4Z2P RNA 0.13 TCGA-W3-AA1O-06 1 47400182 47400182 C T CYP4A11 Silent p.L280L 0.45 TCGA-W3-AA1O-06 1 57257937 57257937 C T C1orf168 Silent p.R183R 0.29 TCGA-W3-AA1O-06 1 57411587 57411587 G A C8B Missense_Mutation p.R338C 0.30 deleterious(0) probably_damaging(0.944) TCGA-W3-AA1O-06 1 6202237 6202237 G A CHD5 Missense_Mutation p.S796F 0.72 deleterious(0.05) probably_damaging(0.979) TCGA-W3-AA1O-06 1 6527567 6527567 G A PLEKHG5 3'UTR 0.58 TCGA-W3-AA1O-06 1 66102094 66102094 C T LEPR Missense_Mutation p.S965F 0.52 tolerated(0.09) benign(0.046) TCGA-W3-AA1O-06 1 67194953 67194953 C T SGIP1 Silent p.I583I 0.45 TCGA-W3-AA1O-06 1 70225977 70225977 C T LRRC7 Silent p.S30S 0.49 TCGA-W3-AA1O-06 1 74737299 74737299 C T FPGT-TNNI3K Silent p.I231I 0.45 TCGA-W3-AA1O-06 1 75038057 75038057 C T C1orf173 Missense_Mutation p.E1113K 0.14 deleterious(0.03) benign(0.292) TCGA-W3-AA1O-06 1 75039022 75039022 C T C1orf173 Missense_Mutation p.G791E 0.24 tolerated(1) benign(0.006) TCGA-W3-AA1O-06 1 7811366 7811366 C T CAMTA1 Silent p.L1599L 0.56 TCGA-W3-AA1O-06 1 78329704 78329704 C T FAM73A Silent p.F500F 0.41 TCGA-W3-AA1O-06 1 79385933 79385933 G A ELTD1 Missense_Mutation p.L466F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1O-06 1 87033191 87033191 G A CLCA4 Missense_Mutation p.V347I 0.42 deleterious(0.04) possibly_damaging(0.776) TCGA-W3-AA1O-06 1 9017324 9017324 G A CA6 Missense_Mutation p.G130R 0.15 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1O-06 1 9323869 9323869 C T H6PD Silent p.F439F 0.51 TCGA-W3-AA1O-06 1 94643693 94643693 C T ARHGAP29 Missense_Mutation p.M837I 0.55 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1O-06 1 99422249 99422249 C T LPPR5 Missense_Mutation p.D96N 0.62 tolerated(0.47) benign(0.015) TCGA-W3-AA1O-06 20 1459119 1459119 C T SIRPB2 Silent p.Q195Q 0.38 TCGA-W3-AA1O-06 20 15480465 15480465 G A MACROD2 Silent p.K206K 0.33 TCGA-W3-AA1O-06 20 15480466 15480466 G A MACROD2 Missense_Mutation p.E207K 0.32 tolerated(0.21) probably_damaging(0.988) TCGA-W3-AA1O-06 20 20226842 20226842 G A C20orf26 Silent p.R714R 0.31 TCGA-W3-AA1O-06 20 23804611 23804611 G A CST2 3'UTR 0.31 TCGA-W3-AA1O-06 20 25597013 25597013 G A NANP Missense_Mutation p.L99F 0.41 tolerated(0.09) probably_damaging(0.986) TCGA-W3-AA1O-06 20 3127946 3127946 C T FASTKD5 Missense_Mutation p.E591K 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 20 31656701 31656701 G A BPIFB3 Silent p.L357L 0.43 TCGA-W3-AA1O-06 20 32873258 32873258 G A AHCY Silent p.F385F 0.31 TCGA-W3-AA1O-06 20 3627515 3627515 C T ATRN 3'UTR 0.58 TCGA-W3-AA1O-06 20 40735427 40735427 T G PTPRT Missense_Mutation p.E1130A 0.48 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 20 45630074 45630074 C T EYA2 Silent p.T39T 0.28 TCGA-W3-AA1O-06 20 45718005 45718005 G A EYA2 Silent p.G263G 0.27 TCGA-W3-AA1O-06 20 47990988 47990988 C T KCNB1 Nonsense_Mutation p.W370* 0.30 TCGA-W3-AA1O-06 20 5169783 5169783 C T CDS2 Missense_Mutation p.P351L 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 20 55209234 55209234 T C TFAP2C Silent p.L278L 0.39 TCGA-W3-AA1O-06 20 5548191 5548191 G A GPCPD1 Missense_Mutation p.P389S 0.42 tolerated(0.57) benign(0.007) TCGA-W3-AA1O-06 20 56099204 56099204 C T CTCFL Missense_Mutation p.E20K 0.34 tolerated(0.28) benign(0.037) TCGA-W3-AA1O-06 20 56190114 56190114 C T ZBP1 Missense_Mutation p.E111K 0.28 tolerated(0.21) benign(0.007) TCGA-W3-AA1O-06 20 57766221 57766221 C T ZNF831 Silent p.A49A 0.32 TCGA-W3-AA1O-06 20 57766222 57766222 C T ZNF831 Missense_Mutation p.P50S 0.33 deleterious(0.01) unknown(0) TCGA-W3-AA1O-06 20 60512042 60512042 G A CDH4 3'UTR 0.41 TCGA-W3-AA1O-06 20 61542403 61542403 G A DIDO1 Silent p.L188L 0.38 TCGA-W3-AA1O-06 20 61945193 61945193 C T COL20A1 Missense_Mutation p.H770Y 0.35 tolerated(0.11) benign(0.035) TCGA-W3-AA1O-06 20 61981196 61981196 G A CHRNA4 Missense_Mutation p.P523S 0.43 tolerated(0.23) benign(0.028) TCGA-W3-AA1O-06 20 9495532 9495532 C T LAMP5 Silent p.I11I 0.27 TCGA-W3-AA1O-06 20 9496925 9496925 G A LAMP5 Missense_Mutation p.G131E 0.34 tolerated(0.1) probably_damaging(0.938) TCGA-W3-AA1O-06 20 9523329 9523329 C T PAK7 Missense_Mutation p.M636I 0.44 deleterious(0) probably_damaging(0.97) TCGA-W3-AA1O-06 21 15013906 15013906 G A POTED 3'UTR 0.21 TCGA-W3-AA1O-06 21 32639208 32639208 G A TIAM1 Silent p.S27S 0.23 TCGA-W3-AA1O-06 21 37602875 37602875 C T DOPEY2 Missense_Mutation p.P598L 0.40 deleterious(0.01) possibly_damaging(0.895) TCGA-W3-AA1O-06 21 37642422 37642422 C T DOPEY2 Silent p.L1867L 0.29 TCGA-W3-AA1O-06 21 37652601 37652601 C T DOPEY2 Silent p.D1996D 0.14 TCGA-W3-AA1O-06 21 41137518 41137518 G A IGSF5 Missense_Mutation p.G53S 0.38 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1O-06 21 44514780 44514780 C T U2AF1 Missense_Mutation p.R156H 0.15 deleterious(0.03) benign(0.117) TCGA-W3-AA1O-06 21 45402307 45402307 C T AGPAT3 3'UTR 0.49 TCGA-W3-AA1O-06 21 45950947 45950947 C T TSPEAR Silent p.R204R 0.18 TCGA-W3-AA1O-06 21 46032191 46032191 C T KRTAP10-8 Silent p.S58S 0.41 TCGA-W3-AA1O-06 21 47959854 47959854 C T DIP2A Silent p.V662V 0.30 TCGA-W3-AA1O-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.04 TCGA-W3-AA1O-06 22 19055627 19055627 G A DGCR2 Missense_Mutation p.P105L 0.30 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-W3-AA1O-06 22 20761233 20761233 C T ZNF74 Missense_Mutation p.S637F 0.19 deleterious_low_confidence(0) benign(0.043) TCGA-W3-AA1O-06 22 25627626 25627626 G A CRYBB2 Missense_Mutation p.G169R 0.37 deleterious(0.01) possibly_damaging(0.892) TCGA-W3-AA1O-06 22 26242170 26242170 C T MYO18B Missense_Mutation p.R1158C 0.40 tolerated(0.22) benign(0.004) TCGA-W3-AA1O-06 22 26400696 26400696 C T MYO18B Silent p.S2115S 0.33 TCGA-W3-AA1O-06 22 26422418 26422418 G A MYO18B Missense_Mutation p.E2160K 0.38 tolerated(0.61) benign(0.006) TCGA-W3-AA1O-06 22 37329989 37329989 G A CSF2RB Missense_Mutation p.G423E 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 22 37387255 37387255 C T TEX33 Missense_Mutation p.G270R 0.29 deleterious(0.02) benign(0.074) TCGA-W3-AA1O-06 22 39497939 39497939 G A APOBEC3H Nonsense_Mutation p.W145* 0.38 TCGA-W3-AA1O-06 22 41864692 41864692 G A PHF5A 5'UTR 0.18 TCGA-W3-AA1O-06 22 42273342 42273342 C T SREBF2 Missense_Mutation p.S499F 0.35 deleterious(0.02) possibly_damaging(0.602) TCGA-W3-AA1O-06 22 46746272 46746272 C T TRMU Missense_Mutation p.T188I 0.34 deleterious(0) probably_damaging(0.93) TCGA-W3-AA1O-06 22 51237319 51237319 C T RPL23AP82 RNA 0.34 TCGA-W3-AA1O-06 2 103128668 103128668 G A SLC9A4 Missense_Mutation p.D499N 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 2 106471673 106471673 C T NCK2 Missense_Mutation p.P52S 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 2 10712207 10712207 G A NOL10 Missense_Mutation p.S686L 0.51 tolerated_low_confidence(0.37) benign(0) TCGA-W3-AA1O-06 2 108872051 108872051 C T SULT1C3 Silent p.P141P 0.35 TCGA-W3-AA1O-06 2 111427070 111427070 G A BUB1 Missense_Mutation p.S176L 0.24 tolerated(0.17) benign(0.18) TCGA-W3-AA1O-06 2 111744741 111744741 C T ACOXL Silent p.L372L 0.27 TCGA-W3-AA1O-06 2 113539254 113539254 C T IL1A Silent p.K82K 0.36 TCGA-W3-AA1O-06 2 113820142 113820142 G A IL36RN Nonsense_Mutation p.W119* 0.26 TCGA-W3-AA1O-06 2 1161261 1161261 G A SNTG2 Missense_Mutation p.E147K 0.26 tolerated(0.23) benign(0.153) TCGA-W3-AA1O-06 2 116485426 116485426 C T DPP10 Missense_Mutation p.P208L 0.22 tolerated(0.17) benign(0.126) TCGA-W3-AA1O-06 2 11773103 11773103 G A GREB1 Silent p.Q1635Q 0.26 TCGA-W3-AA1O-06 2 120252020 120252020 C T SCTR Silent p.T59T 0.29 TCGA-W3-AA1O-06 2 120362788 120362788 G A PCDP1 Silent p.T352T 0.26 TCGA-W3-AA1O-06 2 121107270 121107270 C T INHBB Silent p.S348S 0.38 TCGA-W3-AA1O-06 2 131486864 131486864 C T GPR148 Missense_Mutation p.S47F 0.34 deleterious(0.01) possibly_damaging(0.67) TCGA-W3-AA1O-06 2 133541986 133541986 G A NCKAP5 Silent p.L800L 0.32 TCGA-W3-AA1O-06 2 138375985 138375985 G A THSD7B Missense_Mutation p.E1200K 0.24 deleterious(0.03) unknown(0) TCGA-W3-AA1O-06 2 141777573 141777573 C T LRP1B Missense_Mutation p.E630K 0.36 possibly_damaging(0.549) TCGA-W3-AA1O-06 2 144008140 144008140 G A ARHGAP15 Missense_Mutation p.E149K 0.31 deleterious(0.01) possibly_damaging(0.63) TCGA-W3-AA1O-06 2 15768938 15768938 C T DDX1 Missense_Mutation p.S617F 0.50 deleterious(0) probably_damaging(0.97) TCGA-W3-AA1O-06 2 158300546 158300546 C T CYTIP 5'UTR 0.27 TCGA-W3-AA1O-06 2 158636871 158636871 G A ACVR1 Silent p.I103I 0.31 TCGA-W3-AA1O-06 2 159197123 159197123 G A CCDC148 Silent p.D107D 0.36 TCGA-W3-AA1O-06 2 166237677 166237677 G A SCN2A Silent p.K1507K 0.47 TCGA-W3-AA1O-06 2 167060918 167060918 C T SCN9A Missense_Mutation p.M1474I 0.44 deleterious(0.01) benign(0.209) TCGA-W3-AA1O-06 2 168726629 168726629 G A B3GALT1 3'UTR 0.60 TCGA-W3-AA1O-06 2 170028618 170028618 C T LRP2 Missense_Mutation p.D3724N 0.25 possibly_damaging(0.809) TCGA-W3-AA1O-06 2 179424409 179424409 C T TTN Missense_Mutation p.R28817K 0.34 TCGA-W3-AA1O-06 2 179577676 179577676 C T TTN Missense_Mutation p.D9026N 0.43 TCGA-W3-AA1O-06 2 179587444 179587444 T A TTN Silent p.T7394T 0.55 TCGA-W3-AA1O-06 2 179588388 179588388 C T TTN Missense_Mutation p.E7147K 0.57 TCGA-W3-AA1O-06 2 179590286 179590286 G A TTN Missense_Mutation p.P6882L 0.19 TCGA-W3-AA1O-06 2 179593492 179593492 G A TTN Silent p.I6387I 0.46 TCGA-W3-AA1O-06 2 179594832 179594832 G A TTN Missense_Mutation p.L6099F 0.15 TCGA-W3-AA1O-06 2 179596191 179596191 C T TTN Missense_Mutation p.D5768N 0.32 TCGA-W3-AA1O-06 2 179599702 179599702 G A TTN Silent p.F4983F 0.29 TCGA-W3-AA1O-06 2 179603068 179603068 C T TTN Silent p.R4704R 0.22 TCGA-W3-AA1O-06 2 179612537 179612537 G A TTN Intron 0.45 TCGA-W3-AA1O-06 2 179613768 179613768 C T TTN Intron 0.38 TCGA-W3-AA1O-06 2 179634590 179634590 G A TTN Silent p.S2906S 0.36 TCGA-W3-AA1O-06 2 179641886 179641886 G A TTN Missense_Mutation p.P1602S 0.41 TCGA-W3-AA1O-06 2 179665289 179665289 C T TTN Missense_Mutation p.R139Q 0.31 TCGA-W3-AA1O-06 2 179736958 179736958 C T CCDC141 Missense_Mutation p.E661K 0.32 tolerated(0.57) benign(0.03) TCGA-W3-AA1O-06 2 183387006 183387006 C T PDE1A Missense_Mutation p.G33E 0.28 tolerated_low_confidence(0.47) benign(0.016) TCGA-W3-AA1O-06 2 1926313 1926313 C T MYT1L Missense_Mutation p.D410N 0.57 deleterious(0.03) possibly_damaging(0.481) TCGA-W3-AA1O-06 2 196723292 196723292 G A DNAH7 Missense_Mutation p.S2658F 0.52 deleterious(0) benign(0.279) TCGA-W3-AA1O-06 2 196729544 196729544 C T DNAH7 Missense_Mutation p.E2279K 0.32 deleterious(0.01) benign(0.359) TCGA-W3-AA1O-06 2 198001335 198001335 G A ANKRD44 Missense_Mutation p.A81V 0.17 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1O-06 2 200137355 200137355 G A SATB2 Missense_Mutation p.S594F 0.33 tolerated(0.23) benign(0.092) TCGA-W3-AA1O-06 2 201718691 201718691 G A CLK1 Nonsense_Mutation p.R458* 0.29 TCGA-W3-AA1O-06 2 207003220 207003220 G A NDUFS1 Missense_Mutation p.P475S 0.34 tolerated(0.17) benign(0.007) TCGA-W3-AA1O-06 2 207173153 207173153 C T ZDBF2 Missense_Mutation p.P1301S 0.36 deleterious(0.01) benign(0) TCGA-W3-AA1O-06 2 208632814 208632814 T C FZD5 Missense_Mutation p.N217S 0.47 deleterious(0.02) benign(0.408) TCGA-W3-AA1O-06 2 209214807 209214807 C T PIKFYVE Nonsense_Mutation p.Q1812* 0.33 TCGA-W3-AA1O-06 2 21256376 21256376 C T APOB Missense_Mutation p.G307S 0.34 probably_damaging(0.923) TCGA-W3-AA1O-06 2 219136139 219136139 C T PNKD Missense_Mutation p.H35Y 0.36 deleterious_low_confidence(0.01) benign(0.002) TCGA-W3-AA1O-06 2 219254681 219254681 C T SLC11A1 Missense_Mutation p.S295F 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 2 220247890 220247890 G A DNPEP Missense_Mutation p.P300L 0.43 deleterious(0.02) possibly_damaging(0.589) TCGA-W3-AA1O-06 2 220502415 220502415 C T SLC4A3 Missense_Mutation p.P910L 0.44 tolerated(0.12) benign(0.001) TCGA-W3-AA1O-06 2 220502416 220502416 C T SLC4A3 Silent p.P910P 0.45 TCGA-W3-AA1O-06 2 227729395 227729395 C T RHBDD1 5'UTR 0.35 TCGA-W3-AA1O-06 2 227906876 227906876 G T COL4A4 Missense_Mutation p.P1165T 0.35 unknown(0) TCGA-W3-AA1O-06 2 228890141 228890141 C T SPHKAP Missense_Mutation p.G137E 0.33 tolerated(0.13) probably_damaging(0.991) TCGA-W3-AA1O-06 2 228996790 228996790 G A SPHKAP Missense_Mutation p.S15L 0.28 deleterious(0.04) benign(0.037) TCGA-W3-AA1O-06 2 230411764 230411764 A G DNER Silent p.L298L 0.45 TCGA-W3-AA1O-06 2 231135347 231135347 G A SP140 Silent p.R497R 0.35 TCGA-W3-AA1O-06 2 234343470 234343470 C T DGKD Missense_Mutation p.S170F 0.41 deleterious(0.03) benign(0.443) TCGA-W3-AA1O-06 2 234622153 234622153 C T UGT1A5 Silent p.F172F 0.35 TCGA-W3-AA1O-06 2 238280548 238280548 C T COL6A3 Missense_Mutation p.R1371K 0.34 benign(0.08) TCGA-W3-AA1O-06 2 239161732 239161732 G A PER2 Missense_Mutation p.P978S 0.34 tolerated(0.14) probably_damaging(0.999) TCGA-W3-AA1O-06 2 239161733 239161733 G A PER2 Silent p.S977S 0.33 TCGA-W3-AA1O-06 2 242036701 242036701 G A MTERFD2 Missense_Mutation p.S221F 0.41 tolerated(0.7) benign(0.006) TCGA-W3-AA1O-06 2 26257388 26257388 C T RAB10 5'UTR 0.46 TCGA-W3-AA1O-06 2 26257389 26257389 C T RAB10 5'UTR 0.46 TCGA-W3-AA1O-06 2 26998354 26998354 C T SLC35F6 Silent p.S115S 0.29 TCGA-W3-AA1O-06 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-W3-AA1O-06 2 32640342 32640342 T A BIRC6 Silent p.G661G 0.27 TCGA-W3-AA1O-06 2 3726131 3726131 G A ALLC Missense_Mutation p.R53K 0.50 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1O-06 2 43973075 43973075 G A PLEKHH2 Missense_Mutation p.R1209K 0.49 deleterious(0.04) benign(0.015) TCGA-W3-AA1O-06 2 45169154 45169154 C T SIX3 5'UTR 0.34 TCGA-W3-AA1O-06 2 60688461 60688461 G A BCL11A Missense_Mutation p.S529L 0.39 deleterious(0.05) benign(0.32) TCGA-W3-AA1O-06 2 60689510 60689510 G A BCL11A Silent p.F179F 0.51 TCGA-W3-AA1O-06 2 63169992 63169993 - T EHBP1 Frame_Shift_Ins p.C479Lfs*8 0.16 TCGA-W3-AA1O-06 2 71046558 71046558 G A CLEC4F Missense_Mutation p.P66L 0.52 deleterious(0.01) benign(0.011) TCGA-W3-AA1O-06 2 71058111 71058111 G A CD207 3'UTR 0.44 TCGA-W3-AA1O-06 2 71058169 71058169 G A CD207 3'UTR 0.71 TCGA-W3-AA1O-06 2 71058325 71058325 C T CD207 Nonsense_Mutation p.W281* 0.19 TCGA-W3-AA1O-06 2 74141936 74141936 T C ACTG2 Missense_Mutation p.V248A 0.49 deleterious_low_confidence(0) benign(0.055) TCGA-W3-AA1O-06 2 75425688 75425688 C T TACR1 Missense_Mutation p.A125T 0.32 deleterious(0.03) possibly_damaging(0.84) TCGA-W3-AA1O-06 2 77748861 77748861 G A LRRTM4 5'UTR 0.46 TCGA-W3-AA1O-06 2 85778939 85778939 G A GGCX Silent p.F535F 0.36 TCGA-W3-AA1O-06 2 9572731 9572731 G A CPSF3 Missense_Mutation p.E145K 0.16 tolerated(0.08) benign(0.33) TCGA-W3-AA1O-06 2 97757372 97757372 G A FAHD2B Silent p.S24S 0.29 TCGA-W3-AA1O-06 2 97757373 97757373 G A FAHD2B Missense_Mutation p.S24F 0.29 deleterious(0.03) benign(0.245) TCGA-W3-AA1O-06 2 98920165 98920165 G A VWA3B Missense_Mutation p.E1141K 0.35 deleterious(0.01) benign(0.168) TCGA-W3-AA1O-06 3 100951635 100951635 C T IMPG2 Missense_Mutation p.A1075T 0.55 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1O-06 3 100951636 100951636 C T IMPG2 Silent p.G1074G 0.51 TCGA-W3-AA1O-06 3 108129710 108129710 G A MYH15 Silent p.S1425S 0.40 TCGA-W3-AA1O-06 3 108178269 108178269 G A MYH15 Silent p.L674L 0.27 TCGA-W3-AA1O-06 3 108690179 108690179 C T MORC1 Missense_Mutation p.E850K 0.20 tolerated(0.07) benign(0.027) TCGA-W3-AA1O-06 3 112328885 112328885 C A CCDC80 Missense_Mutation p.D789Y 0.66 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 3 113850029 113850029 G A DRD3 Silent p.P314P 0.24 TCGA-W3-AA1O-06 3 114026802 114026802 G A TIGIT Missense_Mutation p.E187K 0.56 tolerated(0.1) benign(0.175) TCGA-W3-AA1O-06 3 115395152 115395152 C T GAP43 Missense_Mutation p.P144L 0.28 deleterious(0) possibly_damaging(0.475) TCGA-W3-AA1O-06 3 121137921 121137921 G A STXBP5L Missense_Mutation p.D1180N 0.51 tolerated(0.18) possibly_damaging(0.694) TCGA-W3-AA1O-06 3 121383876 121383876 A G GOLGB1 Missense_Mutation p.L3191S 0.48 benign(0.152) TCGA-W3-AA1O-06 3 126138836 126138836 G A CCDC37 Silent p.K309K 0.28 TCGA-W3-AA1O-06 3 126915465 126915465 T C C3orf56 5'UTR 0.33 TCGA-W3-AA1O-06 3 128060682 128060682 C T EEFSEC Missense_Mutation p.P465S 0.12 tolerated(0.06) benign(0.067) TCGA-W3-AA1O-06 3 129121377 129121377 C T EFCAB12 Silent p.E483E 0.30 TCGA-W3-AA1O-06 3 133497535 133497535 C T TF 3'UTR 0.62 TCGA-W3-AA1O-06 3 140281722 140281722 C T CLSTN2 Missense_Mutation p.S761F 0.45 tolerated(0.06) benign(0.017) TCGA-W3-AA1O-06 3 140866007 140866007 C T SPSB4 Silent p.L240L 0.28 TCGA-W3-AA1O-06 3 142496509 142496509 C T TRPC1 Missense_Mutation p.P223L 0.29 deleterious(0) possibly_damaging(0.745) TCGA-W3-AA1O-06 3 14536434 14536434 C T GRIP2 RNA 0.37 TCGA-W3-AA1O-06 3 154861266 154861266 G A MME Nonsense_Mutation p.W408* 0.53 TCGA-W3-AA1O-06 3 155311961 155311961 G A PLCH1 Missense_Mutation p.S68F 0.53 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1O-06 3 164906258 164906258 C T SLITRK3 Missense_Mutation p.M787I 0.26 tolerated(0.39) benign(0) TCGA-W3-AA1O-06 3 167051674 167051674 C T ZBBX Missense_Mutation p.E210K 0.46 tolerated(0.17) benign(0.02) TCGA-W3-AA1O-06 3 168833910 168833910 C T MECOM Missense_Mutation p.D461N 0.17 deleterious(0.03) probably_damaging(0.967) TCGA-W3-AA1O-06 3 170078413 170078413 G A SKIL Silent p.Q98Q 0.50 TCGA-W3-AA1O-06 3 170723092 170723092 T A SLC2A2 Missense_Mutation p.Q315H 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1O-06 3 180366036 180366036 G A CCDC39 Missense_Mutation p.R427C 0.21 deleterious(0) possibly_damaging(0.447) TCGA-W3-AA1O-06 3 180372618 180372618 G A CCDC39 Missense_Mutation p.R288C 0.14 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1O-06 3 182841860 182841860 G C LAMP3 3'UTR 0.27 TCGA-W3-AA1O-06 3 184062409 184062409 A C FAM131A Missense_Mutation p.D251A 0.24 tolerated(0.22) benign(0.133) TCGA-W3-AA1O-06 3 189586498 189586498 G A TP63 Silent p.T374T 0.47 TCGA-W3-AA1O-06 3 195965661 195965661 G A PCYT1A Silent p.F334F 0.40 TCGA-W3-AA1O-06 3 196043031 196043031 G A TCTEX1D2 Missense_Mutation p.S62F 0.18 deleterious(0.05) benign(0.021) TCGA-W3-AA1O-06 3 197553877 197553877 C T LRCH3 Missense_Mutation p.P257S 0.64 deleterious(0) possibly_damaging(0.584) TCGA-W3-AA1O-06 3 197665573 197665573 G A IQCG Missense_Mutation p.P121S 0.23 tolerated(0.31) benign(0.04) TCGA-W3-AA1O-06 3 21706384 21706384 G A ZNF385D Silent p.F53F 0.28 TCGA-W3-AA1O-06 3 27203815 27203815 G A NEK10 3'UTR 0.33 TCGA-W3-AA1O-06 3 29529937 29529937 G A RBMS3 Missense_Mutation p.G85E 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1O-06 3 33414808 33414808 C T FBXL2 Missense_Mutation p.S139F 0.33 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1O-06 3 33543152 33543152 C A CLASP2 Missense_Mutation p.G1484C 0.23 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1O-06 3 38962685 38962685 G A SCN11A Silent p.I258I 0.29 TCGA-W3-AA1O-06 3 39230485 39230485 C T XIRP1 Missense_Mutation p.G151E 0.30 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1O-06 3 39230642 39230642 C T XIRP1 Missense_Mutation p.E99K 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 3 42265085 42265085 T C TRAK1 Silent p.G906G 0.48 TCGA-W3-AA1O-06 3 42728263 42728263 G A KLHL40 Splice_Site p.X384_splice 0.48 TCGA-W3-AA1O-06 3 42787462 42787462 C T CCDC13 Missense_Mutation p.G260R 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1O-06 3 42906840 42906840 G A ACKR2 Silent p.G282G 0.35 TCGA-W3-AA1O-06 3 4355009 4355009 C T SETMAR Missense_Mutation p.A195V 0.71 deleterious_low_confidence(0) possibly_damaging(0.569) TCGA-W3-AA1O-06 3 44489399 44489399 C T ZNF445 Silent p.L588L 0.35 TCGA-W3-AA1O-06 3 45942856 45942856 A T CCR9 Missense_Mutation p.E192D 0.33 tolerated(0.61) benign(0.005) TCGA-W3-AA1O-06 3 48628153 48628153 C T COL7A1 Missense_Mutation p.R578Q 0.36 unknown(0) TCGA-W3-AA1O-06 3 49456580 49456580 G A AMT Missense_Mutation p.S234L 0.33 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1O-06 3 51746707 51746707 C T GRM2 Silent p.A223A 0.43 TCGA-W3-AA1O-06 3 52825901 52825901 G A ITIH1 Missense_Mutation p.D904N 0.41 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1O-06 3 54952855 54952855 C T LRTM1 Silent p.R223R 0.24 TCGA-W3-AA1O-06 3 65376932 65376932 G A MAGI1 Silent p.L767L 0.36 TCGA-W3-AA1O-06 3 77542398 77542398 G A ROBO2 Missense_Mutation p.R240Q 0.12 deleterious(0) benign(0.148) TCGA-W3-AA1O-06 3 86010666 86010666 C T CADM2 Missense_Mutation p.P273L 0.64 tolerated(1) benign(0.001) TCGA-W3-AA1O-06 4 102946470 102946470 G A BANK1 Missense_Mutation p.M466I 0.27 tolerated(0.18) benign(0.004) TCGA-W3-AA1O-06 4 104079830 104079830 C T CENPE Missense_Mutation p.E939K 0.24 benign(0.025) TCGA-W3-AA1O-06 4 104510988 104510988 C T TACR3 Missense_Mutation p.D417N 0.39 tolerated(0.06) benign(0.002) TCGA-W3-AA1O-06 4 106473863 106473863 C T ARHGEF38 5'UTR 0.40 TCGA-W3-AA1O-06 4 110670399 110670399 T G CFI Missense_Mutation p.I375L 0.26 deleterious(0.01) benign(0.141) TCGA-W3-AA1O-06 4 113505179 113505179 C T C4orf21 Missense_Mutation p.R1418K 0.31 deleterious(0.01) possibly_damaging(0.7) TCGA-W3-AA1O-06 4 114376908 114376908 G A CAMK2D 3'UTR 0.40 TCGA-W3-AA1O-06 4 115544673 115544673 C T UGT8 Missense_Mutation p.P213S 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1O-06 4 115760641 115760641 C T NDST4 Missense_Mutation p.G727R 0.45 tolerated(0.09) benign(0.308) TCGA-W3-AA1O-06 4 115767138 115767138 G A NDST4 Silent p.F652F 0.29 TCGA-W3-AA1O-06 4 122075744 122075744 T A TNIP3 Nonsense_Mutation p.K229* 0.37 TCGA-W3-AA1O-06 4 138449913 138449913 C T PCDH18 Missense_Mutation p.R850Q 0.15 tolerated(0.08) possibly_damaging(0.903) TCGA-W3-AA1O-06 4 151505223 151505223 G A MAB21L2 Missense_Mutation p.E348K 0.31 tolerated(0.24) benign(0.022) TCGA-W3-AA1O-06 4 154702714 154702714 G A SFRP2 Silent p.V259V 0.35 TCGA-W3-AA1O-06 4 155491570 155491570 G C FGB Splice_Site p.X415_splice 0.24 TCGA-W3-AA1O-06 4 158073936 158073936 C T GLRB Missense_Mutation p.S324F 0.32 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1O-06 4 164394082 164394082 C T TKTL2 Missense_Mutation p.E269K 0.34 tolerated(0.09) possibly_damaging(0.794) TCGA-W3-AA1O-06 4 166986963 166986963 C T TLL1 Silent p.F712F 0.30 TCGA-W3-AA1O-06 4 169060716 169060716 G A ANXA10 Silent p.Q60Q 0.26 TCGA-W3-AA1O-06 4 175897465 175897465 G A ADAM29 Silent p.R263R 0.41 TCGA-W3-AA1O-06 4 184931645 184931645 A G STOX2 Missense_Mutation p.K552E 0.55 deleterious_low_confidence(0.03) benign(0.108) TCGA-W3-AA1O-06 4 185940881 185940881 G A HELT Missense_Mutation p.G123E 0.60 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1O-06 4 189012636 189012636 C T TRIML2 Missense_Mutation p.G352E 0.49 tolerated(0.34) probably_damaging(0.999) TCGA-W3-AA1O-06 4 189068217 189068217 G A TRIML1 Silent p.G366G 0.34 TCGA-W3-AA1O-06 4 20529930 20529930 G A SLIT2 Intron 0.23 TCGA-W3-AA1O-06 4 20620555 20620555 G A SLIT2 Missense_Mutation p.E1505K 0.30 tolerated(0.48) benign(0.062) TCGA-W3-AA1O-06 4 23825954 23825954 C T PPARGC1A Missense_Mutation p.E276K 0.21 tolerated(0.15) probably_damaging(0.958) TCGA-W3-AA1O-06 4 3210518 3210518 C T HTT Silent p.S2057S 0.14 TCGA-W3-AA1O-06 4 40776372 40776372 G A NSUN7 Silent p.R193R 0.39 TCGA-W3-AA1O-06 4 47514761 47514761 C T ATP10D Silent p.S68S 0.33 TCGA-W3-AA1O-06 4 47593304 47593304 G A ATP10D Missense_Mutation p.G1396E 0.47 tolerated_low_confidence(0.33) benign(0.009) TCGA-W3-AA1O-06 4 49063922 49063922 G A CWH43 3'UTR 0.22 TCGA-W3-AA1O-06 4 54968091 54968091 G A GSX2 3'UTR 0.23 TCGA-W3-AA1O-06 4 5966844 5966844 C T C4orf50 Missense_Mutation p.M636I 0.41 tolerated(0.28) benign(0.068) TCGA-W3-AA1O-06 4 66356134 66356134 G A EPHA5 Missense_Mutation p.R455W 0.07 deleterious(0.01) possibly_damaging(0.798) TCGA-W3-AA1O-06 4 70066377 70066377 C T UGT2B11 Silent p.L457L 0.42 TCGA-W3-AA1O-06 4 71398302 71398302 C T AMTN 3'UTR 0.46 TCGA-W3-AA1O-06 4 71500073 71500073 C T ENAM Missense_Mutation p.P87S 0.31 deleterious(0.02) probably_damaging(0.944) TCGA-W3-AA1O-06 4 71507771 71507771 G A ENAM Missense_Mutation p.G210S 0.32 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1O-06 4 74447555 74447555 G A RASSF6 Missense_Mutation p.H266Y 0.13 tolerated(1) benign(0) TCGA-W3-AA1O-06 4 74846991 74846991 C T PF4 Missense_Mutation p.G79E 0.53 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1O-06 4 75673289 75673289 G A BTC Missense_Mutation p.P167S 0.17 tolerated(0.5) benign(0.082) TCGA-W3-AA1O-06 4 77290647 77290647 C T CCDC158 Missense_Mutation p.E427K 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-W3-AA1O-06 4 79254481 79254481 C T FRAS1 Silent p.D731D 0.60 TCGA-W3-AA1O-06 4 84216592 84216592 C T HPSE Missense_Mutation p.E513K 0.16 tolerated(0.2) benign(0.022) TCGA-W3-AA1O-06 4 87622664 87622664 C T PTPN13 Missense_Mutation p.S302F 0.25 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 5 112902898 112902898 C T YTHDC2 Silent p.V984V 0.40 TCGA-W3-AA1O-06 5 11346651 11346651 C T CTNND2 Silent p.Q487Q 0.27 TCGA-W3-AA1O-06 5 121487714 121487714 C T ZNF474 Missense_Mutation p.S10F 0.32 deleterious(0.01) possibly_damaging(0.861) TCGA-W3-AA1O-06 5 126862326 126862326 T C PRRC1 Silent p.P170P 0.34 TCGA-W3-AA1O-06 5 127728841 127728841 G A FBN2 Silent p.I484I 0.31 TCGA-W3-AA1O-06 5 134782166 134782166 G A C5orf20 Silent p.S211S 0.41 TCGA-W3-AA1O-06 5 137801498 137801498 C A EGR1 Silent p.I16I 0.54 TCGA-W3-AA1O-06 5 13794118 13794118 G A DNAH5 Missense_Mutation p.P2646L 0.67 possibly_damaging(0.908) TCGA-W3-AA1O-06 5 13845074 13845074 G A DNAH5 Missense_Mutation p.P1715S 0.56 benign(0.02) TCGA-W3-AA1O-06 5 13900410 13900410 C T DNAH5 Missense_Mutation p.E722K 0.27 possibly_damaging(0.621) TCGA-W3-AA1O-06 5 13901602 13901602 G A DNAH5 Missense_Mutation p.S604L 0.67 possibly_damaging(0.637) TCGA-W3-AA1O-06 5 140215628 140215628 T C PCDHA7 Missense_Mutation p.F554L 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-W3-AA1O-06 5 140552747 140552747 G A PCDHB7 Missense_Mutation p.E111K 0.41 tolerated_low_confidence(0.26) benign(0.014) TCGA-W3-AA1O-06 5 140557936 140557936 C T PCDHB8 Silent p.F107F 0.14 TCGA-W3-AA1O-06 5 140562580 140562580 G A PCDHB16 Missense_Mutation p.G149E 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-W3-AA1O-06 5 140719905 140719905 C T PCDHGA2 Missense_Mutation p.S456F 0.33 tolerated_low_confidence(0.06) benign(0.155) TCGA-W3-AA1O-06 5 140729920 140729920 C T PCDHGB1 Silent p.I31I 0.25 TCGA-W3-AA1O-06 5 140736453 140736453 C T PCDHGA4 Silent p.I562I 0.32 TCGA-W3-AA1O-06 5 140764147 140764147 G A PCDHGA7 Missense_Mutation p.E561K 0.34 deleterious_low_confidence(0.03) probably_damaging(0.943) TCGA-W3-AA1O-06 5 140769743 140769743 C T PCDHGB4 Silent p.F764F 0.40 TCGA-W3-AA1O-06 5 140782949 140782949 G A PCDHGA9 Missense_Mutation p.E144K 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1O-06 5 140802450 140802450 C T PCDHGA11 Silent p.F552F 0.41 TCGA-W3-AA1O-06 5 141694460 141694460 G C SPRY4 Missense_Mutation p.P95A 0.34 tolerated(0.4) benign(0.006) TCGA-W3-AA1O-06 5 14609088 14609088 C T FAM105A Missense_Mutation p.H287Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1O-06 5 147889120 147889120 G A HTR4 Silent p.I325I 0.42 TCGA-W3-AA1O-06 5 149360631 149360631 G A SLC26A2 Missense_Mutation p.R492Q 0.42 deleterious(0.05) possibly_damaging(0.675) TCGA-W3-AA1O-06 5 149360632 149360632 G A SLC26A2 Silent p.R492R 0.42 TCGA-W3-AA1O-06 5 150090792 150090792 G A DCTN4 Silent p.P441P 0.34 TCGA-W3-AA1O-06 5 153085366 153085366 C T GRIA1 Missense_Mutation p.P531L 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 5 154092525 154092525 C T LARP1 Missense_Mutation p.P14S 0.34 possibly_damaging(0.803) TCGA-W3-AA1O-06 5 154092526 154092526 C T LARP1 Missense_Mutation p.P14L 0.35 possibly_damaging(0.851) TCGA-W3-AA1O-06 5 156589789 156589789 G A FAM71B Missense_Mutation p.S496F 0.35 deleterious(0.01) probably_damaging(0.91) TCGA-W3-AA1O-06 5 159776698 159776698 C T C1QTNF2 Missense_Mutation p.G157E 0.44 deleterious(0) unknown(0) TCGA-W3-AA1O-06 5 160047782 160047782 C T ATP10B Missense_Mutation p.R663K 0.39 tolerated(0.69) benign(0.002) TCGA-W3-AA1O-06 5 169446073 169446073 G A DOCK2 Missense_Mutation p.M1114I 0.32 deleterious(0) possibly_damaging(0.656) TCGA-W3-AA1O-06 5 180046277 180046277 G A FLT4 Missense_Mutation p.L913F 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 5 180166167 180166167 C T OR2Y1 Missense_Mutation p.G298R 0.33 tolerated(0.11) benign(0.12) TCGA-W3-AA1O-06 5 24535925 24535925 G A CDH10 Missense_Mutation p.S178F 0.15 tolerated(0.21) benign(0.002) TCGA-W3-AA1O-06 5 2749124 2749124 G A IRX2 Missense_Mutation p.S233L 0.58 tolerated(0.07) benign(0.284) TCGA-W3-AA1O-06 5 35048070 35048070 G A AGXT2 5'UTR 0.56 TCGA-W3-AA1O-06 5 35065220 35065220 G A PRLR Missense_Mutation p.P614S 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 5 35991454 35991454 G A UGT3A1 5'UTR 0.26 TCGA-W3-AA1O-06 5 36184117 36184117 A C SKP2 3'UTR 0.12 TCGA-W3-AA1O-06 5 36184119 36184119 A T SKP2 3'UTR 0.12 TCGA-W3-AA1O-06 5 36629560 36629560 C T SLC1A3 Missense_Mutation p.L64F 0.20 tolerated(0.06) probably_damaging(0.984) TCGA-W3-AA1O-06 5 36679800 36679800 G A SLC1A3 Missense_Mutation p.G311E 0.12 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1O-06 5 38352428 38352428 C T EGFLAM Silent p.F180F 0.66 TCGA-W3-AA1O-06 5 38511998 38511998 G A LIFR Silent p.P210P 0.57 TCGA-W3-AA1O-06 5 40947796 40947796 G A C7 Nonsense_Mutation p.W277* 0.74 TCGA-W3-AA1O-06 5 40979978 40979978 T C C7 Missense_Mutation p.C773R 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 5 41160458 41160458 G A C6 Silent p.I490I 0.24 TCGA-W3-AA1O-06 5 41382447 41382447 C T PLCXD3 Missense_Mutation p.R98Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1O-06 5 54401343 54401343 C T GZMA Missense_Mutation p.H38Y 0.29 deleterious(0.01) probably_damaging(0.95) TCGA-W3-AA1O-06 5 57754863 57754863 G A PLK2 Silent p.A109A 0.36 TCGA-W3-AA1O-06 5 74066456 74066456 G A NSA2 Missense_Mutation p.G115R 0.28 deleterious(0.01) benign(0.064) TCGA-W3-AA1O-06 5 75914111 75914111 G A F2RL2 Missense_Mutation p.L141F 0.27 tolerated(0.13) benign(0.255) TCGA-W3-AA1O-06 5 76259220 76259220 G A CRHBP Missense_Mutation p.G249E 0.34 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1O-06 5 81574190 81574190 G T RPS23 5'UTR 0.54 TCGA-W3-AA1O-06 5 82841419 82841419 C T VCAN Missense_Mutation p.S3110F 0.38 tolerated(0.2) benign(0.155) TCGA-W3-AA1O-06 5 94134766 94134766 C T MCTP1 Nonsense_Mutation p.W836* 0.30 TCGA-W3-AA1O-06 5 94786094 94786094 C T FAM81B 3'UTR 0.30 TCGA-W3-AA1O-06 6 110428356 110428356 G A WASF1 Missense_Mutation p.S155L 0.62 deleterious(0) unknown(0) TCGA-W3-AA1O-06 6 119324670 119324670 G A FAM184A Missense_Mutation p.L645F 0.70 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 6 129609033 129609033 G A LAMA2 Missense_Mutation p.G860E 0.67 tolerated(0.42) probably_damaging(0.932) TCGA-W3-AA1O-06 6 130465694 130465694 C T SAMD3 Missense_Mutation p.E512K 0.71 tolerated_low_confidence(0.2) benign(0.003) TCGA-W3-AA1O-06 6 138576670 138576670 G C KIAA1244 Missense_Mutation p.E290Q 0.62 deleterious_low_confidence(0.03) benign(0.166) TCGA-W3-AA1O-06 6 13977778 13977778 C T RNF182 Missense_Mutation p.S143F 0.34 deleterious(0.02) benign(0.079) TCGA-W3-AA1O-06 6 149795428 149795428 G A ZC3H12D Silent p.T84T 0.56 TCGA-W3-AA1O-06 6 151152321 151152321 C T PLEKHG1 Missense_Mutation p.R692C 0.55 tolerated(0.08) benign(0.035) TCGA-W3-AA1O-06 6 152740814 152740814 C T SYNE1 Missense_Mutation p.D1771N 0.73 probably_damaging(0.996) TCGA-W3-AA1O-06 6 160999576 160999576 T A LPA Missense_Mutation p.T1484S 0.54 tolerated_low_confidence(0.12) benign(0.338) TCGA-W3-AA1O-06 6 161016413 161016413 G A LPA Missense_Mutation p.P1148S 0.62 tolerated(0.07) probably_damaging(0.994) TCGA-W3-AA1O-06 6 16326646 16326646 G A ATXN1 Silent p.A632A 0.25 TCGA-W3-AA1O-06 6 25769284 25769284 A T SLC17A4 Missense_Mutation p.M55L 0.32 tolerated(0.18) benign(0.034) TCGA-W3-AA1O-06 6 25770697 25770697 C T SLC17A4 Missense_Mutation p.S206L 0.30 deleterious(0) probably_damaging(0.94) TCGA-W3-AA1O-06 6 26091709 26091709 G A HFE Missense_Mutation p.E170K 0.44 deleterious(0.02) probably_damaging(0.995) TCGA-W3-AA1O-06 6 26204982 26204982 G A HIST1H4E Missense_Mutation p.R37H 0.28 tolerated(0.1) possibly_damaging(0.671) TCGA-W3-AA1O-06 6 26234992 26234992 C T HIST1H1D Missense_Mutation p.G57D 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 6 27925218 27925218 C T OR2B6 Missense_Mutation p.S67L 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 6 28540518 28540518 G A SCAND3 Missense_Mutation p.H1050Y 0.40 tolerated(0.2) benign(0.001) TCGA-W3-AA1O-06 6 29364598 29364598 G A OR12D2 Missense_Mutation p.G41E 0.52 tolerated(0.08) possibly_damaging(0.568) TCGA-W3-AA1O-06 6 30608368 30608368 C T ATAT1 Missense_Mutation p.P202S 0.21 tolerated(0.06) benign(0.009) TCGA-W3-AA1O-06 6 31593068 31593068 C T PRRC2A Missense_Mutation p.P195L 0.52 unknown(0) TCGA-W3-AA1O-06 6 32023927 32023927 G A TNXB Missense_Mutation p.P2723L 0.43 possibly_damaging(0.719) TCGA-W3-AA1O-06 6 32261621 32261621 C T C6orf10 Missense_Mutation p.E277K 0.36 tolerated(1) probably_damaging(0.981) TCGA-W3-AA1O-06 6 33132115 33132115 G A COL11A2 Missense_Mutation p.R1581C 0.43 unknown(0) TCGA-W3-AA1O-06 6 33281858 33281858 C T TAPBP 5'UTR 0.32 TCGA-W3-AA1O-06 6 36298147 36298147 G A C6orf222 Silent p.F107F 0.31 TCGA-W3-AA1O-06 6 38905953 38905953 C T DNAH8 Nonsense_Mutation p.Q3706* 0.28 TCGA-W3-AA1O-06 6 42044911 42044911 G A TAF8 Missense_Mutation p.G285E 0.47 tolerated(1) benign(0.012) TCGA-W3-AA1O-06 6 42689860 42689860 G A PRPH2 Silent p.S71S 0.38 TCGA-W3-AA1O-06 6 43274202 43274202 C T CRIP3 Missense_Mutation p.G128R 0.52 deleterious(0.03) benign(0.373) TCGA-W3-AA1O-06 6 51907726 51907726 C T PKHD1 Missense_Mutation p.G1010R 0.29 deleterious(0.01) probably_damaging(0.942) TCGA-W3-AA1O-06 6 55113588 55113588 C T HCRTR2 Silent p.S125S 0.31 TCGA-W3-AA1O-06 6 55925592 55925592 C T COL21A1 Missense_Mutation p.G785E 0.23 deleterious(0) probably_damaging(0.965) TCGA-W3-AA1O-06 6 56328417 56328417 G A DST Silent p.S4988S 0.36 TCGA-W3-AA1O-06 6 57512645 57512645 T A PRIM2 3'UTR 0.09 TCGA-W3-AA1O-06 6 7583132 7583132 G A DSP Silent p.R1879R 0.36 TCGA-W3-AA1O-06 6 76022882 76022882 C T FILIP1 Missense_Mutation p.R889Q 0.45 tolerated(0.39) benign(0.004) TCGA-W3-AA1O-06 6 76023079 76023079 G A FILIP1 Silent p.F823F 0.38 TCGA-W3-AA1O-06 6 83075207 83075207 G A TPBG Missense_Mutation p.E177K 0.35 deleterious(0.04) benign(0.175) TCGA-W3-AA1O-06 6 90604230 90604230 C T GJA10 Missense_Mutation p.H15Y 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 7 100162715 100162715 G A AGFG2 3'UTR 0.11 TCGA-W3-AA1O-06 7 100391838 100391838 G A ZAN Intron 0.49 TCGA-W3-AA1O-06 7 100552931 100552931 C T MUC3A Missense_Mutation p.P526S 0.19 tolerated(0.17) possibly_damaging(0.468) TCGA-W3-AA1O-06 7 100677702 100677702 C T MUC17 Missense_Mutation p.T1002I 0.51 probably_damaging(0.986) TCGA-W3-AA1O-06 7 102982294 102982294 C T DNAJC2 Missense_Mutation p.E58K 0.55 tolerated(0.12) benign(0.248) TCGA-W3-AA1O-06 7 103179706 103179706 C T RELN Silent p.R2333R 0.36 TCGA-W3-AA1O-06 7 107594018 107594018 G A LAMB1 Silent p.C1012C 0.35 TCGA-W3-AA1O-06 7 107820706 107820706 G A NRCAM Missense_Mutation p.P938S 0.30 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1O-06 7 116918171 116918171 C T WNT2 3'UTR 0.46 TCGA-W3-AA1O-06 7 119915599 119915599 C T KCND2 Missense_Mutation p.R305C 0.49 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 7 121652877 121652877 T C PTPRZ1 Silent p.G1259G 0.53 TCGA-W3-AA1O-06 7 122821042 122821042 G A SLC13A1 Silent p.I71I 0.60 TCGA-W3-AA1O-06 7 123346376 123346376 G A WASL Nonsense_Mutation p.R131* 0.49 TCGA-W3-AA1O-06 7 123594471 123594471 C T SPAM1 Missense_Mutation p.R283W 0.55 deleterious(0.05) benign(0.009) TCGA-W3-AA1O-06 7 123599919 123599919 G A SPAM1 Missense_Mutation p.E476K 0.36 tolerated(0.79) benign(0.012) TCGA-W3-AA1O-06 7 127235837 127235837 C T FSCN3 Silent p.S207S 0.57 TCGA-W3-AA1O-06 7 137304579 137304579 C T DGKI Silent p.K328K 0.50 TCGA-W3-AA1O-06 7 13935657 13935657 G A ETV1 Missense_Mutation p.S423F 0.46 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1O-06 7 140481401 140481401 T A BRAF Silent p.G469G 0.47 TCGA-W3-AA1O-06 7 140481403 140481403 C T BRAF Missense_Mutation p.G469R 0.47 deleterious(0.01) probably_damaging(0.918) TCGA-W3-AA1O-06 7 140507768 140507768 G A BRAF Missense_Mutation p.H235Y 0.58 deleterious(0) possibly_damaging(0.492) TCGA-W3-AA1O-06 7 140507769 140507769 T A BRAF Silent p.T234T 0.58 TCGA-W3-AA1O-06 7 141673468 141673468 G A TAS2R38 Missense_Mutation p.R8C 0.54 deleterious_low_confidence(0.02) benign(0) TCGA-W3-AA1O-06 7 142028315 142028315 G A TRBV6-1 Splice_Site p.X17_splice 0.25 TCGA-W3-AA1O-06 7 142045754 142045754 C T TRBV4-2 Silent p.F94F 0.35 TCGA-W3-AA1O-06 7 142498918 142498918 G A TRBC2 Silent p.E65E 0.10 TCGA-W3-AA1O-06 7 143141085 143141085 C T TAS2R60 Silent p.V180V 0.35 TCGA-W3-AA1O-06 7 143421705 143421705 G A FAM115C Missense_Mutation p.R807Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 7 143573340 143573340 G A FAM115A Missense_Mutation p.S121F 0.28 deleterious(0.03) possibly_damaging(0.597) TCGA-W3-AA1O-06 7 147844616 147844616 G A CNTNAP2 Missense_Mutation p.G863E 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 7 150389907 150389907 G A GIMAP2 Missense_Mutation p.R178Q 0.51 deleterious(0) probably_damaging(0.962) TCGA-W3-AA1O-06 7 150558324 150558324 C T AOC1 3'UTR 0.25 TCGA-W3-AA1O-06 7 150647400 150647400 G A KCNH2 Missense_Mutation p.R752W 0.33 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1O-06 7 151873504 151873504 G A KMT2C Nonsense_Mutation p.Q3012* 0.54 TCGA-W3-AA1O-06 7 151945030 151945030 A T KMT2C Missense_Mutation p.I830N 0.06 probably_damaging(0.999) TCGA-W3-AA1O-06 7 1523774 1523774 G A INTS1 Silent p.T1098T 0.55 TCGA-W3-AA1O-06 7 157369351 157369351 C T PTPRN2 Missense_Mutation p.D913N 0.40 tolerated(0.25) possibly_damaging(0.87) TCGA-W3-AA1O-06 7 158456968 158456968 G A NCAPG2 Missense_Mutation p.R575C 0.45 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1O-06 7 158827297 158827297 C T VIPR2 Missense_Mutation p.R285Q 0.43 deleterious(0.04) probably_damaging(0.983) TCGA-W3-AA1O-06 7 23827599 23827599 G A STK31 Missense_Mutation p.E830K 0.29 deleterious(0) probably_damaging(0.951) TCGA-W3-AA1O-06 7 24690159 24690159 G A MPP6 Missense_Mutation p.G160E 0.18 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1O-06 7 35244162 35244162 G A TBX20 Missense_Mutation p.S308F 0.53 tolerated(0.06) benign(0.258) TCGA-W3-AA1O-06 7 36373654 36373654 G A KIAA0895 Missense_Mutation p.H373Y 0.58 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1O-06 7 43506125 43506125 C T HECW1 Silent p.F957F 0.50 TCGA-W3-AA1O-06 7 43917998 43917998 G A URGCP Missense_Mutation p.S355F 0.52 deleterious(0) possibly_damaging(0.82) TCGA-W3-AA1O-06 7 44150568 44150568 G A AEBP1 Silent p.P514P 0.29 TCGA-W3-AA1O-06 7 47474996 47474996 C T TNS3 Missense_Mutation p.D70N 0.49 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 7 47474997 47474997 C T TNS3 Missense_Mutation p.M69I 0.48 deleterious(0.02) benign(0.094) TCGA-W3-AA1O-06 7 47970772 47970772 G A PKD1L1 Silent p.A222A 0.51 TCGA-W3-AA1O-06 7 53103630 53103630 C T POM121L12 Missense_Mutation p.P89L 0.41 tolerated(0.32) benign(0.005) TCGA-W3-AA1O-06 7 55240673 55240673 C T EGFR Intron 0.39 TCGA-W3-AA1O-06 7 56146187 56146187 C T SUMF2 Intron 0.26 TCGA-W3-AA1O-06 7 56146188 56146188 C T SUMF2 Intron 0.26 TCGA-W3-AA1O-06 7 57194352 57194352 C T ZNF479 Missense_Mutation p.R38Q 0.29 tolerated(1) benign(0.004) TCGA-W3-AA1O-06 7 6027135 6027135 G C PMS2 Missense_Mutation p.R421G 0.29 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1O-06 7 63982383 63982383 G A ZNF680 Missense_Mutation p.S250F 0.32 tolerated(0.23) benign(0.003) TCGA-W3-AA1O-06 7 76019298 76019298 C T SRCRB4D 3'UTR 0.38 TCGA-W3-AA1O-06 7 76132761 76132761 C T DTX2 Missense_Mutation p.P470S 0.28 deleterious(0) probably_damaging(0.937) TCGA-W3-AA1O-06 7 82538276 82538276 G A PCLO Missense_Mutation p.R4452C 0.28 unknown(0) TCGA-W3-AA1O-06 7 82581416 82581416 C T PCLO Silent p.R2951R 0.51 TCGA-W3-AA1O-06 7 86394850 86394850 G A GRM3 Missense_Mutation p.G130E 0.51 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1O-06 7 88423540 88423540 G A C7orf62 Silent p.I239I 0.29 TCGA-W3-AA1O-06 7 92760576 92760576 C T SAMD9L Missense_Mutation p.G1570E 0.28 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1O-06 7 92825164 92825164 G A HEPACAM2 Missense_Mutation p.P418S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1O-06 7 92844758 92844758 G A HEPACAM2 Missense_Mutation p.P224L 0.51 deleterious(0.01) possibly_damaging(0.794) TCGA-W3-AA1O-06 7 98507983 98507983 C T TRRAP Missense_Mutation p.T552I 0.50 possibly_damaging(0.808) TCGA-W3-AA1O-06 7 99170934 99170941 TCACACAG - ZNF655 Frame_Shift_Del p.I436Mfs*6 0.43 TCGA-W3-AA1O-06 7 99699026 99699026 G A MCM7 5'UTR 0.35 TCGA-W3-AA1O-06 8 105361765 105361765 C T DCSTAMP Nonsense_Mutation p.Q329* 0.38 TCGA-W3-AA1O-06 8 108970433 108970433 C T RSPO2 Missense_Mutation p.G164E 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 8 110467019 110467019 C T PKHD1L1 Missense_Mutation p.P2271L 0.23 deleterious(0.01) possibly_damaging(0.846) TCGA-W3-AA1O-06 8 110476605 110476605 G A PKHD1L1 Missense_Mutation p.R2515K 0.39 tolerated(0.21) benign(0.12) TCGA-W3-AA1O-06 8 11995579 11995579 G A USP17L2 Nonsense_Mutation p.Q231* 0.24 TCGA-W3-AA1O-06 8 133595970 133595970 C T LRRC6 Silent p.S399S 0.28 TCGA-W3-AA1O-06 8 139158293 139158293 C T FAM135B Missense_Mutation p.G1150E 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-W3-AA1O-06 8 13959918 13959918 C T SGCZ Silent p.R237R 0.37 TCGA-W3-AA1O-06 8 142185504 142185504 C T DENND3 Silent p.L747L 0.29 TCGA-W3-AA1O-06 8 15967683 15967683 C T MSR1 Missense_Mutation p.E423K 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 8 17063204 17063204 C T ZDHHC2 Missense_Mutation p.L173F 0.29 deleterious(0.01) possibly_damaging(0.791) TCGA-W3-AA1O-06 8 22140561 22140561 G A PIWIL2 Missense_Mutation p.G147E 0.27 deleterious(0.01) possibly_damaging(0.801) TCGA-W3-AA1O-06 8 22140562 22140562 G A PIWIL2 Silent p.G147G 0.26 TCGA-W3-AA1O-06 8 23167288 23167288 C T LOXL2 Silent p.T591T 0.41 TCGA-W3-AA1O-06 8 27888864 27888864 G A NUGGC Missense_Mutation p.H602Y 0.33 tolerated(1) benign(0.025) TCGA-W3-AA1O-06 8 2876151 2876151 G A CSMD1 Missense_Mutation p.S2626F 0.35 possibly_damaging(0.718) TCGA-W3-AA1O-06 8 28967511 28967511 G A KIF13B Missense_Mutation p.S1336L 0.47 deleterious(0) probably_damaging(0.913) TCGA-W3-AA1O-06 8 29005078 29005078 C T KIF13B Missense_Mutation p.E619K 0.29 tolerated(0.1) benign(0.087) TCGA-W3-AA1O-06 8 3265713 3265713 C T CSMD1 Silent p.G593G 0.44 TCGA-W3-AA1O-06 8 39502882 39502882 G A ADAM18 Missense_Mutation p.G312E 0.23 deleterious(0.04) possibly_damaging(0.811) TCGA-W3-AA1O-06 8 39581342 39581342 C T ADAM18 Missense_Mutation p.P698L 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 8 42015602 42015602 C T AP3M2 Silent p.I139I 0.36 TCGA-W3-AA1O-06 8 42611462 42611462 G A CHRNA6 Missense_Mutation p.P294S 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1O-06 8 52733184 52733184 C T PCMTD1 Silent p.G267G 0.04 TCGA-W3-AA1O-06 8 55538718 55538718 G A RP1 Missense_Mutation p.R759K 0.31 tolerated(0.53) benign(0.01) TCGA-W3-AA1O-06 8 618733 618733 G A ERICH1 Missense_Mutation p.R375C 0.34 tolerated(0.23) benign(0.006) TCGA-W3-AA1O-06 8 67988761 67988761 C T CSPP1 Silent p.I84I 0.44 TCGA-W3-AA1O-06 8 68942825 68942825 G A PREX2 Missense_Mutation p.E213K 0.44 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1O-06 8 73480497 73480497 G A KCNB2 Silent p.R176R 0.36 TCGA-W3-AA1O-06 8 73848501 73848501 G A KCNB2 Missense_Mutation p.R304Q 0.32 deleterious(0.02) probably_damaging(0.988) TCGA-W3-AA1O-06 8 73849865 73849865 G A KCNB2 Missense_Mutation p.E759K 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.61) TCGA-W3-AA1O-06 8 75757424 75757424 C T PI15 Missense_Mutation p.P152S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1O-06 8 77766941 77766941 G A ZFHX4 Missense_Mutation p.G2595E 0.27 probably_damaging(0.999) TCGA-W3-AA1O-06 8 82371561 82371561 C T FABP9 Missense_Mutation p.A29T 0.37 tolerated(0.06) benign(0.281) TCGA-W3-AA1O-06 8 93017364 93017364 C T RUNX1T1 Silent p.G251G 0.42 TCGA-W3-AA1O-06 8 9567517 9567517 T G TNKS Nonsense_Mutation p.L544* 0.35 TCGA-W3-AA1O-06 9 101824273 101824273 G A COL15A1 Missense_Mutation p.M1141I 0.33 tolerated(0.68) probably_damaging(0.932) TCGA-W3-AA1O-06 9 104357247 104357247 G A PPP3R2 5'UTR 0.38 TCGA-W3-AA1O-06 9 107379873 107379873 A T OR13C9 Missense_Mutation p.L205M 0.32 deleterious(0.02) probably_damaging(0.932) TCGA-W3-AA1O-06 9 112015747 112015747 G A EPB41L4B Missense_Mutation p.P418L 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 9 114090660 114090660 G A OR2K2 Silent p.S18S 0.46 TCGA-W3-AA1O-06 9 115651945 115651945 C T SLC46A2 Silent p.L339L 0.50 TCGA-W3-AA1O-06 9 116151937 116151937 C T ALAD Missense_Mutation p.G219E 0.37 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1O-06 9 117554735 117554735 C T TNFSF15 Splice_Site p.X85_splice 0.41 TCGA-W3-AA1O-06 9 117846657 117846657 G A TNC Silent p.V654V 0.40 TCGA-W3-AA1O-06 9 123943579 123943579 C T RAB14 3'UTR 0.24 TCGA-W3-AA1O-06 9 125143953 125143953 G A PTGS1 Missense_Mutation p.G230D 0.41 deleterious(0.05) probably_damaging(0.997) TCGA-W3-AA1O-06 9 125289383 125289383 G A OR1N1 Silent p.L64L 0.33 TCGA-W3-AA1O-06 9 126414312 126414312 T G DENND1A Missense_Mutation p.I200L 0.32 tolerated(0.18) benign(0.066) TCGA-W3-AA1O-06 9 130213486 130213486 G A RPL12 Intron 0.52 TCGA-W3-AA1O-06 9 130707060 130707060 G A FAM102A Silent p.T345T 0.53 TCGA-W3-AA1O-06 9 130707061 130707061 G A FAM102A Missense_Mutation p.T345I 0.53 deleterious(0.05) benign(0.333) TCGA-W3-AA1O-06 9 131019686 131019686 G A GOLGA2 Missense_Mutation p.P919L 0.30 deleterious(0.01) benign(0.012) TCGA-W3-AA1O-06 9 131019687 131019687 G A GOLGA2 Missense_Mutation p.P919S 0.31 tolerated(0.13) benign(0.006) TCGA-W3-AA1O-06 9 131022802 131022802 G A GOLGA2 Missense_Mutation p.S540F 0.29 deleterious(0.01) benign(0.099) TCGA-W3-AA1O-06 9 131597927 131597927 A G CCBL1 Missense_Mutation p.F292S 0.29 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1O-06 9 136131336 136131336 C T RP11-430N14.4 5'Flank 0.28 TCGA-W3-AA1O-06 9 137809761 137809761 G A FCN1 5'UTR 0.42 TCGA-W3-AA1O-06 9 138438730 138438730 G A OBP2A Missense_Mutation p.G60E 0.32 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1O-06 9 139700885 139700885 G A CCDC183 Intron 0.27 TCGA-W3-AA1O-06 9 139878130 139878130 G A LCNL1 Missense_Mutation p.G31D 0.28 tolerated(0.06) probably_damaging(0.974) TCGA-W3-AA1O-06 9 139904040 139904040 G A ABCA2 Silent p.I2229I 0.30 TCGA-W3-AA1O-06 9 139913647 139913647 G A ABCA2 Silent p.L513L 0.35 TCGA-W3-AA1O-06 9 139913648 139913648 G A ABCA2 Silent p.H512H 0.37 TCGA-W3-AA1O-06 9 140328883 140328883 G A ENTPD8 3'UTR 0.46 TCGA-W3-AA1O-06 9 14848674 14848674 G A FREM1 Missense_Mutation p.S417F 0.40 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1O-06 9 17143359 17143359 G A CNTLN Missense_Mutation p.S145N 0.17 deleterious(0.01) possibly_damaging(0.742) TCGA-W3-AA1O-06 9 32635325 32635325 C T TAF1L Missense_Mutation p.E85K 0.42 tolerated(0.11) benign(0.122) TCGA-W3-AA1O-06 9 35043869 35043869 G A C9orf131 Missense_Mutation p.E415K 0.39 tolerated(0.88) benign(0.083) TCGA-W3-AA1O-06 9 35378342 35378342 C T UNC13B Missense_Mutation p.P623S 0.32 deleterious(0.01) possibly_damaging(0.622) TCGA-W3-AA1O-06 9 35378343 35378343 C T UNC13B Missense_Mutation p.P623L 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-W3-AA1O-06 9 35547964 35547964 G A RUSC2 Silent p.T482T 0.45 TCGA-W3-AA1O-06 9 35738221 35738221 G A GBA2 Intron 0.28 TCGA-W3-AA1O-06 9 37737191 37737191 C T FRMPD1 Silent p.F500F 0.40 TCGA-W3-AA1O-06 9 38615617 38615617 G A ANKRD18A Missense_Mutation p.H157Y 0.50 deleterious(0.03) benign(0.303) TCGA-W3-AA1O-06 9 3937141 3937141 G A GLIS3 Missense_Mutation p.H587Y 0.11 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1O-06 9 5089814 5089814 C T JAK2 Silent p.S904S 0.40 TCGA-W3-AA1O-06 9 6328535 6328535 C T TPD52L3 5'UTR 0.56 TCGA-W3-AA1O-06 9 72755145 72755145 G A MAMDC2 Nonsense_Mutation p.W360* 0.37 TCGA-W3-AA1O-06 9 78796371 78796371 G A PCSK5 Silent p.R687R 0.38 TCGA-W3-AA1O-06 9 79117332 79117332 C T GCNT1 Missense_Mutation p.S12F 0.35 tolerated(0.14) benign(0.002) TCGA-W3-AA1O-06 9 79441589 79441589 C T PRUNE2 Missense_Mutation p.E190K 0.42 tolerated(0.5) benign(0.252) TCGA-W3-AA1O-06 9 85637271 85637271 C T RASEF Missense_Mutation p.E217K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-W3-AA1O-06 9 95610130 95610130 G A ZNF484 Silent p.S315S 0.34 TCGA-W3-AA1O-06 9 98735344 98735344 C T ERCC6L2 3'Flank 0.42 TCGA-W3-AA1O-06 X 10182048 10182048 C T CLCN4 Missense_Mutation p.P635L 0.77 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 X 105277391 105277391 G A SERPINA7 3'UTR 0.81 TCGA-W3-AA1O-06 X 106844446 106844446 C T FRMPD3 Silent p.F1092F 0.70 TCGA-W3-AA1O-06 X 114953315 114953315 C T RP1-241P17.4 Missense_Mutation p.E79K 0.70 deleterious(0.04) possibly_damaging(0.895) TCGA-W3-AA1O-06 X 117960472 117960472 G A ZCCHC12 3'UTR 0.82 TCGA-W3-AA1O-06 X 12734592 12734592 G A FRMPD4 Missense_Mutation p.E672K 0.78 deleterious_low_confidence(0) benign(0.119) TCGA-W3-AA1O-06 X 12736727 12736727 C T FRMPD4 Missense_Mutation p.S1261L 0.78 tolerated_low_confidence(0.46) benign(0.001) TCGA-W3-AA1O-06 X 12938554 12938554 G A TLR8 Silent p.S465S 0.67 TCGA-W3-AA1O-06 X 132159465 132159465 G A USP26 3'UTR 0.83 TCGA-W3-AA1O-06 X 140984824 140984824 G A MAGEC3 Missense_Mutation p.R427Q 0.86 tolerated(0.28) benign(0.043) TCGA-W3-AA1O-06 X 151900801 151900801 G A MAGEA12 5'UTR 0.84 TCGA-W3-AA1O-06 X 153001808 153001808 C T ABCD1 Silent p.L412L 0.79 TCGA-W3-AA1O-06 X 17771388 17771388 G A SCML1 Missense_Mutation p.G289E 0.83 deleterious(0) probably_damaging(1) TCGA-W3-AA1O-06 X 18942596 18942596 G A PHKA2 Silent p.I539I 0.71 TCGA-W3-AA1O-06 X 26212144 26212144 C T MAGEB6 Missense_Mutation p.P61S 0.83 tolerated(0.18) probably_damaging(0.95) TCGA-W3-AA1O-06 X 30254636 30254636 C T MAGEB3 Missense_Mutation p.P199S 0.94 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1O-06 X 34148365 34148365 C T FAM47A Silent p.R677R 0.76 TCGA-W3-AA1O-06 X 34150081 34150081 G A FAM47A Silent p.S105S 0.65 TCGA-W3-AA1O-06 X 53172294 53172294 C T LINC01155 RNA 0.85 TCGA-W3-AA1O-06 X 53672321 53672321 G A HUWE1 Missense_Mutation p.T149I 0.76 possibly_damaging(0.603) TCGA-W3-AA1O-06 X 57458437 57458437 C T FAAH2 Silent p.I361I 0.72 TCGA-W3-AA1O-06 X 66863102 66863102 G A AR Missense_Mutation p.E541K 0.86 deleterious(0) benign(0.095) TCGA-W3-AA1O-06 X 71840610 71840610 G A PHKA1 Missense_Mutation p.S701F 0.83 deleterious(0) benign(0.005) TCGA-W3-AA1O-06 Y 23557772 23557772 G A RBMY2EP RNA 0.75 TCGA-W3-AA1O-06 Y 23557773 23557773 A C RBMY2EP RNA 0.73 TCGA-W3-AA1Q-06 10 101148034 101148034 C T CNNM1 Missense_Mutation p.P884S 0.43 tolerated_low_confidence(0.2) benign(0.001) TCGA-W3-AA1Q-06 10 102048021 102048021 C T PKD2L1 3'UTR 0.35 TCGA-W3-AA1Q-06 10 102247394 102247394 G A SEC31B Silent p.I1173I 0.30 TCGA-W3-AA1Q-06 10 105921719 105921719 C T WDR96 Missense_Mutation p.M1138I 0.27 tolerated(0.14) benign(0.155) TCGA-W3-AA1Q-06 10 105947150 105947150 G A WDR96 Silent p.G596G 0.33 TCGA-W3-AA1Q-06 10 106034673 106034673 C T GSTO2 5'UTR 0.29 TCGA-W3-AA1Q-06 10 106675687 106675687 G A SORCS3 Silent p.R264R 0.33 TCGA-W3-AA1Q-06 10 106916980 106916980 G A SORCS3 Missense_Mutation p.D523N 0.36 deleterious(0.04) probably_damaging(0.954) TCGA-W3-AA1Q-06 10 114136166 114136166 C T ACSL5 Silent p.P33P 0.23 TCGA-W3-AA1Q-06 10 115636577 115636577 G A NHLRC2 Missense_Mutation p.G210E 0.25 tolerated(0.49) benign(0.008) TCGA-W3-AA1Q-06 10 116195914 116195914 G A ABLIM1 3'UTR 0.60 TCGA-W3-AA1Q-06 10 123846469 123846469 C T TACC2 Missense_Mutation p.S1485F 0.21 possibly_damaging(0.851) TCGA-W3-AA1Q-06 10 124600780 124600780 G A CUZD1 Silent p.I49I 0.25 TCGA-W3-AA1Q-06 10 129899958 129899958 G T MKI67 Missense_Mutation p.S3090Y 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-W3-AA1Q-06 10 129913401 129913401 C A MKI67 Missense_Mutation p.G424V 0.36 tolerated(0.06) possibly_damaging(0.622) TCGA-W3-AA1Q-06 10 133106501 133106501 C T TCERG1L Missense_Mutation p.V215M 0.31 tolerated(0.13) benign(0.168) TCGA-W3-AA1Q-06 10 135347398 135347398 G A CYP2E1 Missense_Mutation p.E322K 0.27 tolerated(0.16) possibly_damaging(0.895) TCGA-W3-AA1Q-06 10 28225764 28225764 C T ARMC4 Missense_Mutation p.G715R 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 10 28233320 28233320 G A ARMC4 Missense_Mutation p.P525L 0.28 tolerated(0.55) benign(0.043) TCGA-W3-AA1Q-06 10 28270414 28270414 G A ARMC4 Missense_Mutation p.S306L 0.33 tolerated(0.08) benign(0.002) TCGA-W3-AA1Q-06 10 28272903 28272903 C T ARMC4 Missense_Mutation p.E230K 0.40 tolerated(0.15) benign(0.272) TCGA-W3-AA1Q-06 10 28903493 28903493 C T WAC Intron 0.31 TCGA-W3-AA1Q-06 10 30317918 30317918 G A KIAA1462 Missense_Mutation p.P387S 0.32 tolerated(0.38) possibly_damaging(0.723) TCGA-W3-AA1Q-06 10 37442539 37442539 C T ANKRD30A Missense_Mutation p.P527S 0.12 tolerated(0.27) possibly_damaging(0.857) TCGA-W3-AA1Q-06 10 45877958 45877958 G A ALOX5 Missense_Mutation p.E60K 0.29 tolerated(0.25) benign(0.269) TCGA-W3-AA1Q-06 10 47087104 47087104 G A NPY4R Nonsense_Mutation p.W107* 0.24 TCGA-W3-AA1Q-06 10 48428982 48428982 C T GDF10 Missense_Mutation p.E302K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1Q-06 10 5009378 5009378 C T AKR1C1 Intron 0.21 TCGA-W3-AA1Q-06 10 50315957 50315957 G A VSTM4 Missense_Mutation p.H47Y 0.37 tolerated(0.15) probably_damaging(0.998) TCGA-W3-AA1Q-06 10 50819905 50819905 C T SLC18A3 Silent p.I373I 0.46 TCGA-W3-AA1Q-06 10 50857580 50857580 G A CHAT Missense_Mutation p.R470Q 0.28 tolerated(0.05) benign(0.28) TCGA-W3-AA1Q-06 10 52595970 52595970 C T A1CF Missense_Mutation p.M164I 0.39 tolerated(0.21) benign(0.005) TCGA-W3-AA1Q-06 10 5416041 5416041 T C UCN3 Missense_Mutation p.F120L 0.38 tolerated(0.3) possibly_damaging(0.787) TCGA-W3-AA1Q-06 10 55582573 55582573 T G PCDH15 Missense_Mutation p.E1640A 0.39 tolerated_low_confidence(0.14) benign(0.002) TCGA-W3-AA1Q-06 10 61868701 61868701 G A ANK3 Silent p.I1020I 0.35 TCGA-W3-AA1Q-06 10 61898789 61898789 C T ANK3 Missense_Mutation p.E891K 0.35 benign(0.298) TCGA-W3-AA1Q-06 10 61941146 61941146 G A ANK3 Nonsense_Mutation p.R709* 0.34 TCGA-W3-AA1Q-06 10 61973226 61973226 C T ANK3 Missense_Mutation p.E314K 0.21 probably_damaging(0.978) TCGA-W3-AA1Q-06 10 6521089 6521089 G A PRKCQ Silent p.F406F 0.21 TCGA-W3-AA1Q-06 10 70405932 70405932 A G TET1 Missense_Mutation p.K1149R 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-W3-AA1Q-06 10 70432720 70432720 G A TET1 Nonsense_Mutation p.W1581* 0.42 TCGA-W3-AA1Q-06 10 73121832 73121832 C T SLC29A3 Missense_Mutation p.R299C 0.26 tolerated(0.19) benign(0.082) TCGA-W3-AA1Q-06 10 73562963 73562963 C T CDH23 Intron 0.27 TCGA-W3-AA1Q-06 10 74034476 74034476 T C DDIT4 Missense_Mutation p.S77P 0.30 tolerated(0.05) possibly_damaging(0.72) TCGA-W3-AA1Q-06 10 74684272 74684272 C T OIT3 Missense_Mutation p.R413C 0.33 deleterious(0) probably_damaging(0.932) TCGA-W3-AA1Q-06 10 75523647 75523647 C T SEC24C Missense_Mutation p.S378F 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-W3-AA1Q-06 10 7621749 7621749 C T ITIH5 Missense_Mutation p.E463K 0.38 deleterious(0.02) benign(0.263) TCGA-W3-AA1Q-06 10 81061875 81061875 C T ZMIZ1 Silent p.F677F 0.37 TCGA-W3-AA1Q-06 10 81373624 81373624 C T SFTPA1 Missense_Mutation p.P183S 0.27 tolerated(0.12) benign(0.029) TCGA-W3-AA1Q-06 10 95110984 95110984 G A MYOF Silent p.I1297I 0.37 TCGA-W3-AA1Q-06 10 97194428 97194428 G A SORBS1 Silent p.I41I 0.49 TCGA-W3-AA1Q-06 11 106647179 106647179 C T GUCY1A2 Missense_Mutation p.G608R 0.35 deleterious(0.02) possibly_damaging(0.696) TCGA-W3-AA1Q-06 11 106810636 106810636 C T GUCY1A2 Silent p.G252G 0.29 TCGA-W3-AA1Q-06 11 1095321 1095321 C T MUC2 Silent p.P2047P 0.31 TCGA-W3-AA1Q-06 11 111154848 111154848 T C C11orf53 Missense_Mutation p.S19P 0.40 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1Q-06 11 111839270 111839270 C T DIXDC1 Missense_Mutation p.P75L 0.16 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 11 113860466 113860466 C T HTR3A Missense_Mutation p.S511F 0.23 tolerated(0.07) benign(0.422) TCGA-W3-AA1Q-06 11 115111100 115111100 G A CADM1 Silent p.I55I 0.27 TCGA-W3-AA1Q-06 11 117374573 117374573 G A DSCAML1 Silent p.F842F 0.38 TCGA-W3-AA1Q-06 11 118921810 118921810 G A HYOU1 Silent p.Y534Y 0.32 TCGA-W3-AA1Q-06 11 118921811 118921811 T C HYOU1 Missense_Mutation p.Y534C 0.31 tolerated(0.17) possibly_damaging(0.586) TCGA-W3-AA1Q-06 11 121429346 121429346 C T SORL1 Missense_Mutation p.R904W 0.32 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1Q-06 11 121492902 121492902 C T SORL1 Silent p.I2032I 0.27 TCGA-W3-AA1Q-06 11 1220130 1220130 G A MUC5AC RNA 0.29 TCGA-W3-AA1Q-06 11 123848018 123848018 G A OR10S1 Silent p.F127F 0.31 TCGA-W3-AA1Q-06 11 123900416 123900416 C T OR10G8 Silent p.F29F 0.34 TCGA-W3-AA1Q-06 11 124180408 124180408 G A OR8D1 Silent p.F85F 0.24 TCGA-W3-AA1Q-06 11 124618204 124618204 G A VSIG2 Intron 0.34 TCGA-W3-AA1Q-06 11 1270193 1270193 G A MUC5B Nonsense_Mutation p.W4028* 0.16 TCGA-W3-AA1Q-06 11 128807677 128807677 G A TP53AIP1 Nonsense_Mutation p.Q13* 0.31 TCGA-W3-AA1Q-06 11 129312804 129312804 G A BARX2 Nonsense_Mutation p.W188* 0.28 TCGA-W3-AA1Q-06 11 129755436 129755436 G A NFRKB Silent p.S191S 0.41 TCGA-W3-AA1Q-06 11 130278753 130278753 G A ADAMTS8 Silent p.V611V 0.37 TCGA-W3-AA1Q-06 11 134147792 134147792 C T GLB1L3 Silent p.F116F 0.38 TCGA-W3-AA1Q-06 11 17415932 17415932 C T ABCC8 Missense_Mutation p.E1476K 0.35 deleterious(0) possibly_damaging(0.688) TCGA-W3-AA1Q-06 11 17483301 17483301 G A ABCC8 Silent p.F217F 0.39 TCGA-W3-AA1Q-06 11 20676343 20676343 G A SLC6A5 Missense_Mutation p.D775N 0.42 deleterious(0.05) benign(0.079) TCGA-W3-AA1Q-06 11 2170381 2170381 C T INS-IGF2 Missense_Mutation p.G128R 0.26 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-W3-AA1Q-06 11 22247534 22247534 G A ANO5 Missense_Mutation p.R100K 0.23 tolerated(0.49) probably_damaging(0.99) TCGA-W3-AA1Q-06 11 27680103 27680103 G A BDNF Silent p.I85I 0.28 TCGA-W3-AA1Q-06 11 28113011 28113011 G A KIF18A Missense_Mutation p.A178V 0.28 deleterious(0.01) benign(0.2) TCGA-W3-AA1Q-06 11 31327243 31327243 C T DCDC1 Missense_Mutation p.E225K 0.42 tolerated(0.53) benign(0.002) TCGA-W3-AA1Q-06 11 32410525 32410525 G A WT1 3'UTR 0.20 TCGA-W3-AA1Q-06 11 33569402 33569402 C T KIAA1549L Missense_Mutation p.H863Y 0.47 deleterious(0) possibly_damaging(0.634) TCGA-W3-AA1Q-06 11 3430141 3430141 C T TSSC2 RNA 0.33 TCGA-W3-AA1Q-06 11 35457683 35457683 C T PAMR1 Silent p.R384R 0.31 TCGA-W3-AA1Q-06 11 3681549 3681549 G A ART1 Missense_Mutation p.R267Q 0.37 tolerated(0.2) benign(0.064) TCGA-W3-AA1Q-06 11 3724081 3724081 G A NUP98 Missense_Mutation p.L1042F 0.28 tolerated(0.33) possibly_damaging(0.735) TCGA-W3-AA1Q-06 11 4567294 4567294 C T OR52M1 Missense_Mutation p.P292S 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 11 46515215 46515215 G A AMBRA1 Missense_Mutation p.H732Y 0.22 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-W3-AA1Q-06 11 4703590 4703590 C T OR51E2 Missense_Mutation p.A118T 0.42 deleterious(0) benign(0.419) TCGA-W3-AA1Q-06 11 4790715 4790715 G A OR51F1 Nonsense_Mutation p.Q145* 0.35 TCGA-W3-AA1Q-06 11 48238934 48238934 C T OR4B1 Silent p.F191F 0.29 TCGA-W3-AA1Q-06 11 4869718 4869718 G A OR51S1 Missense_Mutation p.R241C 0.39 tolerated(0.09) benign(0.141) TCGA-W3-AA1Q-06 11 4870017 4870017 G A OR51S1 Missense_Mutation p.P141L 0.32 deleterious(0.01) possibly_damaging(0.737) TCGA-W3-AA1Q-06 11 4928877 4928877 C T OR51A7 Missense_Mutation p.S93L 0.37 deleterious(0.02) possibly_damaging(0.809) TCGA-W3-AA1Q-06 11 5020782 5020782 C T OR51L1 Silent p.S190S 0.28 TCGA-W3-AA1Q-06 11 5142857 5142857 C T OR52A4 RNA 0.36 TCGA-W3-AA1Q-06 11 5221098 5221098 G A OR51V1 Missense_Mutation p.S278F 0.22 deleterious(0.02) probably_damaging(0.968) TCGA-W3-AA1Q-06 11 5264439 5264439 G A HBG1 3'Flank 0.24 TCGA-W3-AA1Q-06 11 5274628 5274628 C T HBG2 Missense_Mutation p.G108E 0.20 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 11 5363967 5363967 C T OR51B5 Missense_Mutation p.G263E 0.29 deleterious(0.01) possibly_damaging(0.651) TCGA-W3-AA1Q-06 11 5372760 5372760 C T OR51B6 Missense_Mutation p.S8F 0.30 tolerated(0.05) benign(0.003) TCGA-W3-AA1Q-06 11 56000181 56000181 G A OR5T2 Missense_Mutation p.R161C 0.37 deleterious(0.02) benign(0.081) TCGA-W3-AA1Q-06 11 56000310 56000310 G A OR5T2 Missense_Mutation p.P118S 0.26 deleterious(0.01) possibly_damaging(0.468) TCGA-W3-AA1Q-06 11 56310626 56310626 G A OR5M11 Silent p.L36L 0.35 TCGA-W3-AA1Q-06 11 57003422 57003422 C G APLNR Missense_Mutation p.G353R 0.28 deleterious(0.05) possibly_damaging(0.708) TCGA-W3-AA1Q-06 11 57116159 57116159 C T P2RX3 Missense_Mutation p.P182S 0.11 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 11 5809281 5809281 G A OR52N1 Missense_Mutation p.P256S 0.66 deleterious(0.02) probably_damaging(0.982) TCGA-W3-AA1Q-06 11 5809603 5809603 G A OR52N1 Silent p.F148F 0.36 TCGA-W3-AA1Q-06 11 5809735 5809735 G A OR52N1 Silent p.F104F 0.33 TCGA-W3-AA1Q-06 11 58206998 58206998 G A OR5B12 Silent p.I209I 0.29 TCGA-W3-AA1Q-06 11 58478231 58478231 G A GLYAT Missense_Mutation p.S107L 0.28 tolerated(0.11) benign(0.139) TCGA-W3-AA1Q-06 11 5862326 5862326 C T OR52E6 Missense_Mutation p.D268N 0.48 tolerated(1) benign(0.001) TCGA-W3-AA1Q-06 11 58723084 58723084 G A GLYATL1 Missense_Mutation p.E196K 0.24 tolerated(0.47) benign(0.039) TCGA-W3-AA1Q-06 11 58723088 58723088 C T GLYATL1 Missense_Mutation p.T197I 0.19 tolerated(0.16) benign(0.006) TCGA-W3-AA1Q-06 11 5878131 5878131 G A OR52E8 Missense_Mutation p.R268C 0.34 deleterious(0.03) benign(0.248) TCGA-W3-AA1Q-06 11 6024178 6024178 G A OR56A4 Silent p.F67F 0.28 TCGA-W3-AA1Q-06 11 6048479 6048479 A T OR56A1 Missense_Mutation p.S152R 0.29 deleterious(0.02) possibly_damaging(0.8) TCGA-W3-AA1Q-06 11 60636740 60636740 G A ZP1 Splice_Site p.X106_splice 0.17 TCGA-W3-AA1Q-06 11 60906206 60906206 T C VPS37C Intron 0.27 TCGA-W3-AA1Q-06 11 61563050 61563050 C T FEN1 Missense_Mutation p.R73C 0.32 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 11 62186531 62186531 G A SCGB1A1 5'UTR 0.32 TCGA-W3-AA1Q-06 11 62297207 62297207 T C AHNAK Missense_Mutation p.K1561R 0.27 probably_damaging(0.997) TCGA-W3-AA1Q-06 11 62532813 62532813 C T POLR2G Missense_Mutation p.S112F 0.36 tolerated(0.07) possibly_damaging(0.632) TCGA-W3-AA1Q-06 11 63883881 63883881 G A FLRT1 Missense_Mutation p.V48I 0.28 tolerated(0.86) benign(0.068) TCGA-W3-AA1Q-06 11 66192360 66192360 C T NPAS4 Missense_Mutation p.P667S 0.36 tolerated(0.31) probably_damaging(0.915) TCGA-W3-AA1Q-06 11 66204635 66204635 G A MRPL11 Missense_Mutation p.S138L 0.42 deleterious(0.02) benign(0.133) TCGA-W3-AA1Q-06 11 67372443 67372443 C T C11orf72 Missense_Mutation p.R33Q 0.43 benign(0.417) TCGA-W3-AA1Q-06 11 67410182 67410182 G A ACY3 3'UTR 0.35 TCGA-W3-AA1Q-06 11 67560735 67560735 G A FAM86C2P RNA 0.34 TCGA-W3-AA1Q-06 11 70282323 70282323 C T CTTN Intron 0.34 TCGA-W3-AA1Q-06 11 73020695 73020695 G A ARHGEF17 Missense_Mutation p.E338K 0.31 tolerated_low_confidence(0.18) benign(0.073) TCGA-W3-AA1Q-06 11 82644564 82644564 C T C11orf82 Silent p.I728I 0.21 TCGA-W3-AA1Q-06 11 86519242 86519242 G A PRSS23 Missense_Mutation p.G186E 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 11 89173863 89173863 G A NOX4 Silent p.F156F 0.40 TCGA-W3-AA1Q-06 11 92616251 92616251 G A FAT3 Missense_Mutation p.R4210Q 0.36 benign(0.005) TCGA-W3-AA1Q-06 11 93806295 93806295 G A HEPHL1 Missense_Mutation p.R446K 0.29 tolerated(0.86) benign(0.002) TCGA-W3-AA1Q-06 11 99690469 99690469 C T CNTN5 Missense_Mutation p.H84Y 0.33 tolerated(0.24) possibly_damaging(0.574) TCGA-W3-AA1Q-06 11 99715862 99715862 C T CNTN5 Missense_Mutation p.R149C 0.37 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 12 102071110 102071110 A G MYBPC1 Missense_Mutation p.N1009S 0.28 deleterious(0) probably_damaging(0.936) TCGA-W3-AA1Q-06 12 10560164 10560164 G A KLRC4 3'UTR 0.17 TCGA-W3-AA1Q-06 12 110778770 110778770 C A ATP2A2 Missense_Mutation p.L690I 0.24 deleterious(0) possibly_damaging(0.662) TCGA-W3-AA1Q-06 12 110819717 110819717 G A ANAPC7 Silent p.A358A 0.31 TCGA-W3-AA1Q-06 12 116972693 116972693 T C LINC00173 RNA 0.31 TCGA-W3-AA1Q-06 12 117723986 117723986 C T NOS1 Missense_Mutation p.E405K 0.26 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1Q-06 12 117768385 117768385 C T NOS1 Missense_Mutation p.D164N 0.41 tolerated_low_confidence(0.12) benign(0.029) TCGA-W3-AA1Q-06 12 117768897 117768897 C T NOS1 5'Flank 0.48 TCGA-W3-AA1Q-06 12 120534961 120534961 G A RAB35 3'UTR 0.42 TCGA-W3-AA1Q-06 12 120541633 120541633 G A RAB35 Missense_Mutation p.S75F 0.38 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 12 121790251 121790251 G A ANAPC5 5'UTR 0.44 TCGA-W3-AA1Q-06 12 122691598 122691598 A G B3GNT4 Missense_Mutation p.Y267C 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 12 123705997 123705997 G A MPHOSPH9 Missense_Mutation p.S113F 0.22 tolerated(0.06) probably_damaging(0.935) TCGA-W3-AA1Q-06 12 124414313 124414313 G A DNAH10 Intron 0.47 TCGA-W3-AA1Q-06 12 126137038 126137038 C T TMEM132B Silent p.L651L 0.33 TCGA-W3-AA1Q-06 12 126138576 126138576 C T TMEM132B Missense_Mutation p.P853S 0.31 tolerated(0.39) benign(0.032) TCGA-W3-AA1Q-06 12 129285504 129285504 G A SLC15A4 Nonsense_Mutation p.Q437* 0.19 TCGA-W3-AA1Q-06 12 130648143 130648143 G A FZD10 Nonsense_Mutation p.W219* 0.28 TCGA-W3-AA1Q-06 12 132281888 132281888 C T SFSWAP Silent p.S952S 0.52 TCGA-W3-AA1Q-06 12 132504634 132504634 C T EP400 Missense_Mutation p.R1440C 0.25 unknown(0) TCGA-W3-AA1Q-06 12 14996157 14996157 C T ART4 5'UTR 0.59 TCGA-W3-AA1Q-06 12 21172267 21172267 G A SLCO1B7 Missense_Mutation p.M57I 0.12 deleterious(0.02) probably_damaging(0.99) TCGA-W3-AA1Q-06 12 21172269 21172269 G A SLCO1B7 Missense_Mutation p.G58E 0.12 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1Q-06 12 21728916 21728916 G T GYS2 Missense_Mutation p.L127M 0.12 tolerated(0.07) probably_damaging(0.974) TCGA-W3-AA1Q-06 12 24736710 24736710 G A LINC00477 RNA 0.27 TCGA-W3-AA1Q-06 12 33031402 33031402 C T PKP2 Missense_Mutation p.E138K 0.51 tolerated(0.16) benign(0.057) TCGA-W3-AA1Q-06 12 33592474 33592474 C T SYT10 5'UTR 0.23 TCGA-W3-AA1Q-06 12 48188636 48188636 C T HDAC7 Silent p.P455P 0.43 TCGA-W3-AA1Q-06 12 48879982 48879982 G A C12orf54 Missense_Mutation p.M29I 0.35 tolerated(0.32) benign(0) TCGA-W3-AA1Q-06 12 49485044 49485044 G A DHH Silent p.G144G 0.39 TCGA-W3-AA1Q-06 12 50410499 50410499 C T RACGAP1 5'UTR 0.32 TCGA-W3-AA1Q-06 12 50829333 50829333 T C LARP4 Missense_Mutation p.I154T 0.28 deleterious(0) possibly_damaging(0.864) TCGA-W3-AA1Q-06 12 51748186 51748186 G A GALNT6 Missense_Mutation p.H616Y 0.29 tolerated(0.79) benign(0.006) TCGA-W3-AA1Q-06 12 52115683 52115683 C T SCN8A Silent p.L663L 0.38 TCGA-W3-AA1Q-06 12 52642434 52642434 G A KRT7 Missense_Mutation p.G434R 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 12 52828109 52828109 G A KRT75 5'UTR 0.44 TCGA-W3-AA1Q-06 12 52867310 52867310 G A KRT6C Missense_Mutation p.S71F 0.43 deleterious(0) unknown(0) TCGA-W3-AA1Q-06 12 53203224 53203224 C T KRT4 Silent p.E259E 0.19 TCGA-W3-AA1Q-06 12 53207554 53207554 C T KRT4 Missense_Mutation p.G97S 0.39 tolerated(0.09) probably_damaging(0.919) TCGA-W3-AA1Q-06 12 53233748 53233748 G A KRT78 Silent p.A356A 0.44 TCGA-W3-AA1Q-06 12 55356870 55356870 G A TESPA1 Missense_Mutation p.S271F 0.33 deleterious(0.01) possibly_damaging(0.555) TCGA-W3-AA1Q-06 12 55725889 55725889 G A OR6C3 Silent p.R135R 0.31 TCGA-W3-AA1Q-06 12 56559321 56559321 G A SMARCC2 Missense_Mutation p.P974S 0.48 tolerated(0.24) unknown(0) TCGA-W3-AA1Q-06 12 57112035 57112035 G A NACA Intron 0.23 TCGA-W3-AA1Q-06 12 57140563 57140563 G T PRIM1 Splice_Site p.X148_splice 0.18 TCGA-W3-AA1Q-06 12 5744483 5744483 C T ANO2 Missense_Mutation p.V551M 0.15 deleterious(0.02) probably_damaging(0.933) TCGA-W3-AA1Q-06 12 57866398 57866398 G A ARHGAP9 Missense_Mutation p.R700W 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 12 6345388 6345388 G A CD9 Missense_Mutation p.D190N 0.18 tolerated(0.86) benign(0.001) TCGA-W3-AA1Q-06 12 64882344 64882344 G A TBK1 Missense_Mutation p.R473K 0.25 tolerated(0.8) benign(0.084) TCGA-W3-AA1Q-06 12 6623472 6623472 C T NCAPD2 Missense_Mutation p.T210I 0.53 deleterious(0.01) possibly_damaging(0.756) TCGA-W3-AA1Q-06 12 67698933 67698933 C T CAND1 Silent p.I495I 0.31 TCGA-W3-AA1Q-06 12 69080751 69080751 C T NUP107 5'UTR 0.33 TCGA-W3-AA1Q-06 12 69080752 69080752 C T NUP107 5'UTR 0.34 TCGA-W3-AA1Q-06 12 69651553 69651553 C T CPSF6 Missense_Mutation p.P188S 0.28 tolerated(0.22) unknown(0) TCGA-W3-AA1Q-06 12 70929838 70929838 G A PTPRB Silent p.I2016I 0.31 TCGA-W3-AA1Q-06 12 70929903 70929903 C T PTPRB Missense_Mutation p.G1995R 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 12 70988474 70988474 G A PTPRB Missense_Mutation p.S430F 0.27 tolerated(0.07) benign(0.012) TCGA-W3-AA1Q-06 12 75442051 75442051 G A KCNC2 Silent p.P554P 0.45 TCGA-W3-AA1Q-06 12 7639198 7639198 C T CD163 Silent p.E785E 0.22 TCGA-W3-AA1Q-06 12 77419383 77419383 G A E2F7 Silent p.S840S 0.32 TCGA-W3-AA1Q-06 12 78562641 78562641 C T NAV3 Missense_Mutation p.P1659L 0.46 tolerated(0.3) possibly_damaging(0.549) TCGA-W3-AA1Q-06 12 8023606 8023606 G A SLC2A14 5'UTR 0.26 TCGA-W3-AA1Q-06 12 8085609 8085609 G A SLC2A3 Silent p.V81V 0.49 TCGA-W3-AA1Q-06 12 81648747 81648747 G A ACSS3 3'UTR 0.29 TCGA-W3-AA1Q-06 12 8374798 8374798 C T FAM90A1 Missense_Mutation p.E339K 0.18 tolerated(0.59) possibly_damaging(0.8) TCGA-W3-AA1Q-06 12 8377471 8377471 G A FAM90A1 5'UTR 0.26 TCGA-W3-AA1Q-06 12 8666233 8666233 G A CLEC4D 5'UTR 0.29 TCGA-W3-AA1Q-06 12 8802109 8802109 C T MFAP5 Missense_Mutation p.E133K 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 12 8975224 8975224 G A A2ML1 5'UTR 0.26 TCGA-W3-AA1Q-06 12 93101338 93101338 T C C12orf74 Intron 0.37 TCGA-W3-AA1Q-06 12 93219953 93219953 G A EEA1 Nonsense_Mutation p.R505* 0.30 TCGA-W3-AA1Q-06 12 97087539 97087539 G A C12orf55 Missense_Mutation p.G2102R 0.29 tolerated(0.39) benign(0.002) TCGA-W3-AA1Q-06 13 102375166 102375166 C T FGF14 3'UTR 0.40 TCGA-W3-AA1Q-06 13 111084700 111084700 G A COL4A2 Missense_Mutation p.G226E 0.32 probably_damaging(1) TCGA-W3-AA1Q-06 13 21395880 21395880 G T XPO4 Missense_Mutation p.T379N 0.41 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 13 29599621 29599621 G A MTUS2 Silent p.V272V 0.35 TCGA-W3-AA1Q-06 13 32849121 32849121 C T FRY Missense_Mutation p.A2760V 0.38 deleterious(0.04) possibly_damaging(0.809) TCGA-W3-AA1Q-06 13 39597248 39597248 G A PROSER1 Missense_Mutation p.P195L 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 13 39621233 39621233 G A NHLRC3 Silent p.G245G 0.17 TCGA-W3-AA1Q-06 13 50080797 50080797 G A PHF11 Missense_Mutation p.E41K 0.32 tolerated(0.17) benign(0.14) TCGA-W3-AA1Q-06 13 51417457 51417457 G A DLEU7 Missense_Mutation p.P109L 0.39 tolerated(0.21) probably_damaging(0.999) TCGA-W3-AA1Q-06 13 58208412 58208412 G A PCDH17 Missense_Mutation p.D578N 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 13 66879161 66879161 C T PCDH9 Splice_Site p.X1114_splice 0.40 TCGA-W3-AA1Q-06 13 72049908 72049908 C T DACH1 Silent p.T650T 0.35 TCGA-W3-AA1Q-06 13 84453655 84453655 G A SLITRK1 Missense_Mutation p.S663F 0.33 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1Q-06 13 88330164 88330164 C T SLITRK5 Missense_Mutation p.R841W 0.32 tolerated(0.15) probably_damaging(0.929) TCGA-W3-AA1Q-06 13 98660311 98660311 A T IPO5 Splice_Site p.X591_splice 0.39 TCGA-W3-AA1Q-06 13 99063076 99063076 C T FARP1 Missense_Mutation p.S564L 0.34 deleterious(0.04) benign(0.104) TCGA-W3-AA1Q-06 13 99449441 99449441 G A DOCK9 Silent p.L2042L 0.19 TCGA-W3-AA1Q-06 14 100608102 100608102 C T EVL Silent p.L397L 0.16 TCGA-W3-AA1Q-06 14 101347428 101347428 C T RTL1 Missense_Mutation p.R1233Q 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1Q-06 14 101459616 101459616 G A SNORD114-31 RNA 0.36 TCGA-W3-AA1Q-06 14 102548544 102548544 A C HSP90AA1 Missense_Mutation p.L787V 0.28 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1Q-06 14 102916181 102916181 C T TECPR2 Silent p.F1097F 0.39 TCGA-W3-AA1Q-06 14 105408285 105408285 G A AHNAK2 Silent p.S4501S 0.28 TCGA-W3-AA1Q-06 14 105408286 105408286 G A AHNAK2 Missense_Mutation p.S4501F 0.28 probably_damaging(0.964) TCGA-W3-AA1Q-06 14 105413543 105413543 G A AHNAK2 Missense_Mutation p.P2749S 0.37 probably_damaging(0.993) TCGA-W3-AA1Q-06 14 105420457 105420457 G A AHNAK2 Missense_Mutation p.P444L 0.25 benign(0.195) TCGA-W3-AA1Q-06 14 105847415 105847415 C T PACS2 Missense_Mutation p.S416F 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1Q-06 14 106236052 106236052 G A IGHG3 Silent p.C251C 0.41 TCGA-W3-AA1Q-06 14 106994113 106994113 G A IGHV3-48 Nonsense_Mutation p.Q18* 0.32 TCGA-W3-AA1Q-06 14 107211346 107211346 C T IGHV3-73 Missense_Mutation p.G16S 0.30 deleterious_low_confidence(0.04) benign(0.108) TCGA-W3-AA1Q-06 14 107218774 107218774 C T IGHV3-74 Missense_Mutation p.G85S 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.693) TCGA-W3-AA1Q-06 14 20248616 20248616 C T OR4M1 Silent p.I45I 0.27 TCGA-W3-AA1Q-06 14 21780018 21780018 C T RPGRIP1 Silent p.L322L 0.18 TCGA-W3-AA1Q-06 14 22386680 22386680 C T TRAV13-2 Missense_Mutation p.T30I 0.57 tolerated(0.2) benign(0.033) TCGA-W3-AA1Q-06 14 22447127 22447127 C T TRAV8-6 Silent p.A36A 0.31 TCGA-W3-AA1Q-06 14 22447128 22447128 C T TRAV8-6 Missense_Mutation p.P37S 0.31 tolerated(0.72) benign(0.037) TCGA-W3-AA1Q-06 14 22508864 22508864 G A TRAV20 5'UTR 0.36 TCGA-W3-AA1Q-06 14 23374639 23374639 G A RBM23 Missense_Mutation p.P160L 0.32 deleterious(0) benign(0.425) TCGA-W3-AA1Q-06 14 23826406 23826406 G A EFS 3'UTR 0.24 TCGA-W3-AA1Q-06 14 23944932 23944932 C T NGDN Intron 0.25 TCGA-W3-AA1Q-06 14 24884766 24884766 G A NYNRIN Missense_Mutation p.E1271K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-W3-AA1Q-06 14 31638598 31638598 C T HECTD1 Missense_Mutation p.R470K 0.32 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1Q-06 14 33291517 33291517 C T AKAP6 Missense_Mutation p.R1500C 0.26 tolerated_low_confidence(0.13) benign(0) TCGA-W3-AA1Q-06 14 50044443 50044443 A T RPS29 3'UTR 0.43 TCGA-W3-AA1Q-06 14 63416741 63416741 G A KCNH5 Intron 0.30 TCGA-W3-AA1Q-06 14 70419006 70419006 G A SMOC1 Missense_Mutation p.R84Q 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-W3-AA1Q-06 14 70713045 70713045 G A ADAM21P1 RNA 0.28 TCGA-W3-AA1Q-06 14 71199983 71199983 G A MAP3K9 Silent p.I715I 0.26 TCGA-W3-AA1Q-06 14 71267758 71267758 A T MAP3K9 Missense_Mutation p.I149N 0.36 deleterious(0) possibly_damaging(0.576) TCGA-W3-AA1Q-06 14 72925062 72925062 G A RGS6 Missense_Mutation p.D107N 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 14 73718519 73718519 C T PAPLN Missense_Mutation p.P246L 0.33 deleterious(0) probably_damaging(0.924) TCGA-W3-AA1Q-06 14 73718520 73718520 C T PAPLN Silent p.P246P 0.27 TCGA-W3-AA1Q-06 14 73743815 73743815 G A NUMB Missense_Mutation p.S476F 0.11 deleterious(0.01) benign(0.158) TCGA-W3-AA1Q-06 14 75386604 75386604 C T RPS6KL1 Missense_Mutation p.E112K 0.37 tolerated(0.05) probably_damaging(0.974) TCGA-W3-AA1Q-06 14 76525063 76525063 T G IFT43 Intron 0.36 TCGA-W3-AA1Q-06 14 77580273 77580273 G C CIPC Missense_Mutation p.S271T 0.36 tolerated(0.55) possibly_damaging(0.844) TCGA-W3-AA1Q-06 14 77719703 77719703 C T TMEM63C Missense_Mutation p.S735F 0.44 deleterious(0.05) possibly_damaging(0.595) TCGA-W3-AA1Q-06 14 86087903 86087903 C T FLRT2 Silent p.F15F 0.38 TCGA-W3-AA1Q-06 14 88892746 88892746 C T SPATA7 Silent p.S181S 0.41 TCGA-W3-AA1Q-06 14 89629205 89629205 G A FOXN3 Silent p.S342S 0.35 TCGA-W3-AA1Q-06 14 92347754 92347754 C T FBLN5 Missense_Mutation p.E291K 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 14 93962809 93962809 G A UNC79 Nonsense_Mutation p.W78* 0.32 TCGA-W3-AA1Q-06 14 93994922 93994922 C T UNC79 Silent p.L151L 0.24 TCGA-W3-AA1Q-06 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.28 TCGA-W3-AA1Q-06 14 95057156 95057156 C T SERPINA5 Silent p.L321L 0.35 TCGA-W3-AA1Q-06 14 96180340 96180340 C T TCL1A Missense_Mutation p.E22K 0.25 tolerated(0.08) benign(0.077) TCGA-W3-AA1Q-06 14 96953391 96953391 C T AK7 Silent p.L711L 0.32 TCGA-W3-AA1Q-06 15 20170351 20170351 C T IGHV1OR15-9 Missense_Mutation p.G2S 0.38 deleterious(0.03) benign(0.028) TCGA-W3-AA1Q-06 15 20488853 20488853 G A CHEK2P2 RNA 0.13 TCGA-W3-AA1Q-06 15 20649620 20649620 C T HERC2P3 RNA 0.28 TCGA-W3-AA1Q-06 15 21071224 21071224 C T POTEB2 Missense_Mutation p.M129I 0.14 tolerated(0.16) benign(0.029) TCGA-W3-AA1Q-06 15 24921916 24921916 G A NPAP1 Missense_Mutation p.R301K 0.34 tolerated(0.27) benign(0.064) TCGA-W3-AA1Q-06 15 25429451 25429451 T C SNORD115-10 5'Flank 0.71 TCGA-W3-AA1Q-06 15 25486746 25486746 C T SNORD115-40 5'Flank 0.37 TCGA-W3-AA1Q-06 15 34635360 34635360 C T NOP10 5'UTR 0.35 TCGA-W3-AA1Q-06 15 42046764 42046764 C T MGA Missense_Mutation p.P2380S 0.38 tolerated(0.54) benign(0.004) TCGA-W3-AA1Q-06 15 42059502 42059502 C T MGA 3'UTR 0.41 TCGA-W3-AA1Q-06 15 43281068 43281068 G A UBR1 Nonsense_Mutation p.R1316* 0.29 TCGA-W3-AA1Q-06 15 51828595 51828595 G A DMXL2 Silent p.D694D 0.33 TCGA-W3-AA1Q-06 15 51975525 51975525 C T SCG3 Silent p.S97S 0.30 TCGA-W3-AA1Q-06 15 57731364 57731364 G A CGNL1 Silent p.V389V 0.37 TCGA-W3-AA1Q-06 15 57731765 57731765 C T CGNL1 Missense_Mutation p.S523F 0.23 tolerated(0.11) possibly_damaging(0.474) TCGA-W3-AA1Q-06 15 65111353 65111353 G A PIF1 Missense_Mutation p.P468L 0.42 tolerated(0.16) probably_damaging(1) TCGA-W3-AA1Q-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.29 tolerated(0.08) probably_damaging(0.913) TCGA-W3-AA1Q-06 15 70351104 70351104 C T TLE3 Silent p.G272G 0.42 TCGA-W3-AA1Q-06 15 78317747 78317747 G A TBC1D2B Missense_Mutation p.R314C 0.28 deleterious(0.03) probably_damaging(0.912) TCGA-W3-AA1Q-06 15 78452388 78452388 C T IDH3A Intron 0.61 TCGA-W3-AA1Q-06 15 81625193 81625193 G A TMC3 Missense_Mutation p.S957F 0.30 deleterious_low_confidence(0.02) benign(0.354) TCGA-W3-AA1Q-06 15 90244988 90244988 C T WDR93 Missense_Mutation p.P4L 0.23 tolerated_low_confidence(0.37) benign(0.005) TCGA-W3-AA1Q-06 15 91769623 91769623 G A SV2B Missense_Mutation p.E44K 0.37 deleterious(0) possibly_damaging(0.756) TCGA-W3-AA1Q-06 15 93198602 93198602 G A FAM174B Silent p.I96I 0.26 TCGA-W3-AA1Q-06 15 93492335 93492335 C T CHD2 Intron 0.30 TCGA-W3-AA1Q-06 16 1270462 1270462 C T CACNA1H Missense_Mutation p.P2177L 0.49 tolerated(0.69) benign(0.01) TCGA-W3-AA1Q-06 16 15785052 15785052 C A NDE1 Missense_Mutation p.P192H 0.15 tolerated(0.07) benign(0.038) TCGA-W3-AA1Q-06 16 15831335 15831335 C T MYH11 Silent p.K1095K 0.27 TCGA-W3-AA1Q-06 16 16228344 16228344 C T ABCC1 Silent p.F1368F 0.30 TCGA-W3-AA1Q-06 16 17232302 17232302 C T XYLT1 Silent p.K558K 0.41 TCGA-W3-AA1Q-06 16 1822195 1822195 C T MRPS34 3'UTR 0.21 TCGA-W3-AA1Q-06 16 19452111 19452111 G A TMC5 Missense_Mutation p.D251N 0.40 tolerated(0.15) benign(0.06) TCGA-W3-AA1Q-06 16 20448595 20448595 G T ACSM5 Missense_Mutation p.R481L 0.30 deleterious(0.02) possibly_damaging(0.58) TCGA-W3-AA1Q-06 16 20565131 20565131 C T ACSM2B Silent p.S236S 0.23 TCGA-W3-AA1Q-06 16 22126769 22126769 C T VWA3A Missense_Mutation p.S264F 0.22 deleterious(0) benign(0.171) TCGA-W3-AA1Q-06 16 2285531 2285531 C T E4F1 Silent p.A771A 0.27 TCGA-W3-AA1Q-06 16 2287950 2287950 C T DNASE1L2 Silent p.R258R 0.58 TCGA-W3-AA1Q-06 16 22926890 22926890 G A HS3ST2 3'UTR 0.37 TCGA-W3-AA1Q-06 16 23080265 23080265 G A USP31 Missense_Mutation p.S1054L 0.43 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-W3-AA1Q-06 16 2499871 2499871 C T CCNF Missense_Mutation p.S481F 0.21 deleterious(0.01) benign(0.114) TCGA-W3-AA1Q-06 16 26147414 26147414 C T HS3ST4 Missense_Mutation p.P406S 0.40 deleterious(0.03) probably_damaging(0.982) TCGA-W3-AA1Q-06 16 27375106 27375106 C T IL4R Silent p.I811I 0.35 TCGA-W3-AA1Q-06 16 28167674 28167674 G A XPO6 Missense_Mutation p.T273I 0.30 tolerated(0.06) possibly_damaging(0.555) TCGA-W3-AA1Q-06 16 30199383 30199383 G A CORO1A Missense_Mutation p.E328K 0.34 deleterious(0.04) benign(0.445) TCGA-W3-AA1Q-06 16 30999252 30999252 C A HSD3B7 Silent p.A286A 0.11 TCGA-W3-AA1Q-06 16 31418986 31418986 C T ITGAD Silent p.I285I 0.46 TCGA-W3-AA1Q-06 16 3293277 3293277 C T MEFV Missense_Mutation p.R737K 0.23 tolerated(0.73) benign(0.013) TCGA-W3-AA1Q-06 16 3611771 3611771 G A NLRC3 Silent p.F696F 0.43 TCGA-W3-AA1Q-06 16 46744595 46744595 C T MYLK3 Missense_Mutation p.E741K 0.36 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1Q-06 16 46943763 46943763 C T GPT2 Silent p.L248L 0.39 TCGA-W3-AA1Q-06 16 47007578 47007578 G A DNAJA2 5'UTR 0.21 TCGA-W3-AA1Q-06 16 4849693 4849693 G A ROGDI Silent p.V142V 0.29 TCGA-W3-AA1Q-06 16 50666267 50666267 C T NKD1 Silent p.N257N 0.19 TCGA-W3-AA1Q-06 16 51175914 51175914 G A SALL1 Silent p.I73I 0.35 TCGA-W3-AA1Q-06 16 61687550 61687550 C T CDH8 Missense_Mutation p.E788K 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-W3-AA1Q-06 16 66766312 66766312 T C DYNC1LI2 Missense_Mutation p.I287V 0.30 deleterious(0.05) benign(0.164) TCGA-W3-AA1Q-06 16 66886730 66886730 G A CA7 Nonsense_Mutation p.W211* 0.43 TCGA-W3-AA1Q-06 16 69959343 69959343 C T WWP2 Missense_Mutation p.A397V 0.34 tolerated(0.33) benign(0.003) TCGA-W3-AA1Q-06 16 70400139 70400139 C T DDX19A Silent p.H252H 0.24 TCGA-W3-AA1Q-06 16 70917885 70917885 C T HYDIN Missense_Mutation p.R3306Q 0.32 possibly_damaging(0.776) TCGA-W3-AA1Q-06 16 71012907 71012907 C T HYDIN Silent p.R1516R 0.25 TCGA-W3-AA1Q-06 16 75563920 75563920 G A CHST5 Silent p.I121I 0.35 TCGA-W3-AA1Q-06 16 7645590 7645590 G A RBFOX1 Missense_Mutation p.D190N 0.22 deleterious(0) benign(0.092) TCGA-W3-AA1Q-06 16 77918558 77918558 C T VAT1L Silent p.V312V 0.40 TCGA-W3-AA1Q-06 16 84778731 84778731 C T USP10 Missense_Mutation p.S215F 0.28 tolerated_low_confidence(0.12) benign(0.008) TCGA-W3-AA1Q-06 16 87677913 87677913 C T JPH3 Silent p.V144V 0.31 TCGA-W3-AA1Q-06 17 10297718 10297718 C T MYH8 Missense_Mutation p.E1672K 0.29 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1Q-06 17 10298527 10298527 C T MYH8 Missense_Mutation p.E1629K 0.29 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1Q-06 17 10427155 10427155 G A MYH2 Missense_Mutation p.S1741F 0.32 deleterious(0.02) benign(0.166) TCGA-W3-AA1Q-06 17 1577895 1577895 A C PRPF8 Missense_Mutation p.V1047G 0.38 deleterious(0) possibly_damaging(0.772) TCGA-W3-AA1Q-06 17 16833692 16833692 C T TBC1D27 RNA 0.14 TCGA-W3-AA1Q-06 17 18023529 18023529 C T MYO15A Missense_Mutation p.S472F 0.30 possibly_damaging(0.485) TCGA-W3-AA1Q-06 17 263651 263651 C T C17orf97 Silent p.P339P 0.26 TCGA-W3-AA1Q-06 17 26861408 26861408 C T FOXN1 Silent p.F329F 0.32 TCGA-W3-AA1Q-06 17 27844495 27844496 CC T TAOK1 Frame_Shift_Del p.P577Sfs*35 0.33 TCGA-W3-AA1Q-06 17 28538376 28538376 G A SLC6A4 Missense_Mutation p.A424V 0.15 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1Q-06 17 3101203 3101203 C T OR1A2 Missense_Mutation p.H131Y 0.33 deleterious(0.03) benign(0.033) TCGA-W3-AA1Q-06 17 31323991 31323991 C T SPACA3 Silent p.V158V 0.39 TCGA-W3-AA1Q-06 17 34073218 34073218 C T GAS2L2 Missense_Mutation p.G433E 0.36 tolerated(0.18) benign(0.022) TCGA-W3-AA1Q-06 17 36091638 36091638 G A HNF1B Silent p.S331S 0.32 TCGA-W3-AA1Q-06 17 37186530 37186530 C T CTD-2206N4.2 5'Flank 0.36 TCGA-W3-AA1Q-06 17 37922415 37922415 G A IKZF3 Silent p.S386S 0.31 TCGA-W3-AA1Q-06 17 38249506 38249506 C T NR1D1 Missense_Mutation p.V559M 0.26 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1Q-06 17 39280407 39280407 C T KRTAP4-12 5'UTR 0.38 TCGA-W3-AA1Q-06 17 39596493 39596493 G A KRT38 Silent p.I165I 0.40 TCGA-W3-AA1Q-06 17 40970686 40970686 G A BECN1 Missense_Mutation p.L122F 0.39 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1Q-06 17 40970687 40970687 G A BECN1 Silent p.D121D 0.37 TCGA-W3-AA1Q-06 17 42854934 42854934 C T ADAM11 Silent p.V622V 0.42 TCGA-W3-AA1Q-06 17 4462879 4462879 T G GGT6 Missense_Mutation p.H106P 0.36 tolerated(0.21) probably_damaging(0.994) TCGA-W3-AA1Q-06 17 4463032 4463032 C T GGT6 Missense_Mutation p.G55E 0.39 deleterious_low_confidence(0.03) benign(0.002) TCGA-W3-AA1Q-06 17 45822595 45822595 G A TBX21 Missense_Mutation p.G491R 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 17 46865361 46865361 C T TTLL6 Silent p.R467R 0.28 TCGA-W3-AA1Q-06 17 47584001 47584001 G A NGFR Nonsense_Mutation p.W183* 0.33 TCGA-W3-AA1Q-06 17 48193034 48193034 G A SAMD14 Missense_Mutation p.S239F 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 17 48193045 48193045 G A SAMD14 Silent p.F235F 0.37 TCGA-W3-AA1Q-06 17 48777151 48777151 G A ANKRD40 Silent p.F129F 0.31 TCGA-W3-AA1Q-06 17 48822098 48822098 C T LUC7L3 Missense_Mutation p.S206F 0.32 deleterious(0.01) unknown(0) TCGA-W3-AA1Q-06 17 56356464 56356464 C T MPO Missense_Mutation p.D264N 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-W3-AA1Q-06 17 58149607 58149607 G A HEATR6 Missense_Mutation p.S223L 0.31 tolerated(0.32) benign(0.001) TCGA-W3-AA1Q-06 17 60758224 60758224 G A MRC2 Nonsense_Mutation p.W846* 0.21 TCGA-W3-AA1Q-06 17 60758225 60758225 G A MRC2 Nonsense_Mutation p.W846* 0.22 TCGA-W3-AA1Q-06 17 61466797 61466797 C T TANC2 Silent p.F907F 0.33 TCGA-W3-AA1Q-06 17 61571326 61571326 C T ACE Silent p.I1060I 0.34 TCGA-W3-AA1Q-06 17 61987885 61987885 G A CSHL1 Silent p.I67I 0.32 TCGA-W3-AA1Q-06 17 61994653 61994653 G A GH1 3'UTR 0.37 TCGA-W3-AA1Q-06 17 62018650 62018650 C T SCN4A Silent p.L1664L 0.38 TCGA-W3-AA1Q-06 17 6589460 6589460 G A SLC13A5 3'UTR 0.29 TCGA-W3-AA1Q-06 17 66921008 66921008 C T ABCA8 Missense_Mutation p.E426K 0.34 tolerated(0.72) benign(0.02) TCGA-W3-AA1Q-06 17 66928518 66928518 G A ABCA8 Silent p.F236F 0.32 TCGA-W3-AA1Q-06 17 7230825 7230825 G A NEURL4 Missense_Mutation p.P221S 0.38 tolerated(0.32) benign(0) TCGA-W3-AA1Q-06 17 7250502 7250502 G A ACAP1 Silent p.P428P 0.33 TCGA-W3-AA1Q-06 17 73780818 73780818 G A UNK 5'Flank 0.52 TCGA-W3-AA1Q-06 17 74307663 74307663 G A PRPSAP1 Missense_Mutation p.S373F 0.22 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 17 74401355 74401356 CA - UBE2O Frame_Shift_Del p.A174Rfs*33 0.25 TCGA-W3-AA1Q-06 17 74679983 74679983 G A MXRA7 Intron 0.39 TCGA-W3-AA1Q-06 17 7536576 7536576 G A SHBG Missense_Mutation p.R372K 0.18 tolerated(0.71) benign(0.001) TCGA-W3-AA1Q-06 17 76967691 76967691 G A LGALS3BP Silent p.P575P 0.26 TCGA-W3-AA1Q-06 17 7721999 7721999 G A DNAH2 Silent p.K3525K 0.41 TCGA-W3-AA1Q-06 17 7751441 7751441 C T KDM6B Missense_Mutation p.S612F 0.36 unknown(0) TCGA-W3-AA1Q-06 17 79512809 79512809 G A C17orf70 Missense_Mutation p.A758V 0.25 deleterious(0) possibly_damaging(0.86) TCGA-W3-AA1Q-06 17 79973188 79973188 C T ASPSCR1 Missense_Mutation p.P531S 0.38 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-W3-AA1Q-06 18 12718550 12718550 C T PSMG2 Missense_Mutation p.S108F 0.31 deleterious(0) benign(0.049) TCGA-W3-AA1Q-06 18 21364108 21364108 C T LAMA3 Silent p.F530F 0.34 TCGA-W3-AA1Q-06 18 28651658 28651658 G A DSC2 Missense_Mutation p.R680C 0.41 deleterious(0.02) probably_damaging(0.932) TCGA-W3-AA1Q-06 18 28972233 28972233 G A DSG4 Missense_Mutation p.G312E 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 18 29104828 29104828 G A DSG2 Missense_Mutation p.E331K 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 18 31320161 31320161 G A ASXL3 Silent p.Q931Q 0.29 TCGA-W3-AA1Q-06 18 31324993 31324993 G A ASXL3 Silent p.L1727L 0.35 TCGA-W3-AA1Q-06 18 33607014 33607014 G A RPRD1A Missense_Mutation p.S213F 0.28 deleterious(0.04) benign(0.077) TCGA-W3-AA1Q-06 18 43524010 43524010 G A EPG5 Missense_Mutation p.H585Y 0.33 deleterious(0.02) benign(0.146) TCGA-W3-AA1Q-06 18 50848518 50848518 G A DCC Missense_Mutation p.D719N 0.34 deleterious(0) possibly_damaging(0.866) TCGA-W3-AA1Q-06 18 50976927 50976927 G A DCC Missense_Mutation p.S1096N 0.35 tolerated(0.25) benign(0.028) TCGA-W3-AA1Q-06 18 56203089 56203089 C T ALPK2 Missense_Mutation p.E1444K 0.36 tolerated(0.4) benign(0) TCGA-W3-AA1Q-06 18 59806272 59806272 G A PIGN Missense_Mutation p.L354F 0.29 tolerated(0.7) benign(0.003) TCGA-W3-AA1Q-06 18 61449709 61449709 C T SERPINB7 Missense_Mutation p.L35F 0.43 deleterious(0.01) probably_damaging(0.943) TCGA-W3-AA1Q-06 18 61564393 61564393 G A SERPINB2 Silent p.G119G 0.32 TCGA-W3-AA1Q-06 18 6973131 6973131 G A LAMA1 Silent p.S2233S 0.33 TCGA-W3-AA1Q-06 18 6975015 6975015 C T LAMA1 Silent p.E2170E 0.36 TCGA-W3-AA1Q-06 18 70417587 70417587 G A NETO1 Silent p.Y417Y 0.32 TCGA-W3-AA1Q-06 18 74659507 74659507 C T ZNF236 Missense_Mutation p.P1603S 0.36 tolerated(0.77) benign(0.002) TCGA-W3-AA1Q-06 18 8783910 8783910 C T SOGA2 Missense_Mutation p.S267F 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-W3-AA1Q-06 18 8783911 8783911 C T SOGA2 Silent p.S267S 0.31 TCGA-W3-AA1Q-06 18 9254729 9254729 A G ANKRD12 Silent p.L488L 0.48 TCGA-W3-AA1Q-06 19 10084617 10084617 G A COL5A3 Missense_Mutation p.P1179L 0.48 probably_damaging(0.973) TCGA-W3-AA1Q-06 19 10116762 10116762 C T COL5A3 Nonsense_Mutation p.W78* 0.22 TCGA-W3-AA1Q-06 19 10655499 10655499 C T ATG4D Silent p.S92S 0.34 TCGA-W3-AA1Q-06 19 10670512 10670512 G A KRI1 Missense_Mutation p.R307C 0.20 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 19 11024598 11024598 C T CARM1 Missense_Mutation p.P239S 0.31 tolerated(0.16) benign(0.004) TCGA-W3-AA1Q-06 19 11024599 11024599 C T CARM1 Missense_Mutation p.P239L 0.33 deleterious(0.01) benign(0.01) TCGA-W3-AA1Q-06 19 11408917 11408917 G A TSPAN16 Missense_Mutation p.V57I 0.28 tolerated(1) benign(0.019) TCGA-W3-AA1Q-06 19 11408918 11408918 T A TSPAN16 Missense_Mutation p.V57D 0.28 deleterious(0) possibly_damaging(0.844) TCGA-W3-AA1Q-06 19 11489180 11489180 T G EPOR Missense_Mutation p.E336A 0.31 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 19 12691175 12691175 G A ZNF490 3'UTR 0.29 TCGA-W3-AA1Q-06 19 13323246 13323246 C T CACNA1A Silent p.P2047P 0.36 TCGA-W3-AA1Q-06 19 13996841 13996841 G A C19orf57 Missense_Mutation p.P566S 0.30 tolerated(0.33) probably_damaging(0.986) TCGA-W3-AA1Q-06 19 14162482 14162482 G A IL27RA Missense_Mutation p.G531E 0.23 deleterious(0.03) possibly_damaging(0.777) TCGA-W3-AA1Q-06 19 14707699 14707699 C T CLEC17A Missense_Mutation p.P153S 0.42 tolerated(0.16) benign(0.084) TCGA-W3-AA1Q-06 19 15590179 15590179 C T PGLYRP2 Missense_Mutation p.A2T 0.31 tolerated_low_confidence(0.07) benign(0.265) TCGA-W3-AA1Q-06 19 1578354 1578354 C T MBD3 Silent p.E287E 0.25 TCGA-W3-AA1Q-06 19 16338453 16338453 C T AP1M1 Silent p.I268I 0.30 TCGA-W3-AA1Q-06 19 16631189 16631189 G A CHERP Silent p.S777S 0.33 TCGA-W3-AA1Q-06 19 16793245 16793245 C T TMEM38A Silent p.A160A 0.13 TCGA-W3-AA1Q-06 19 17343239 17343239 C T NR2F6 Silent p.K379K 0.44 TCGA-W3-AA1Q-06 19 17722633 17722633 G A UNC13A Silent p.V1530V 0.30 TCGA-W3-AA1Q-06 19 17783217 17783217 G A UNC13A Silent p.I80I 0.35 TCGA-W3-AA1Q-06 19 19120955 19120955 G A SUGP2 Missense_Mutation p.L683F 0.41 tolerated(0.13) benign(0.025) TCGA-W3-AA1Q-06 19 19616180 19616180 G A GATAD2A Missense_Mutation p.S600N 0.33 tolerated(0.07) benign(0.037) TCGA-W3-AA1Q-06 19 20807076 20807076 G A ZNF626 3'UTR 0.30 TCGA-W3-AA1Q-06 19 2109881 2109881 G A AP3D1 Missense_Mutation p.P1114L 0.27 tolerated(0.36) benign(0.044) TCGA-W3-AA1Q-06 19 22363812 22363812 C T ZNF676 Missense_Mutation p.R236Q 0.28 tolerated(1) benign(0.016) TCGA-W3-AA1Q-06 19 2917836 2917836 C T ZNF57 Missense_Mutation p.S406L 0.34 tolerated(0.06) probably_damaging(0.987) TCGA-W3-AA1Q-06 19 29698523 29698523 G A UQCRFS1 Missense_Mutation p.P253S 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 19 30104864 30104864 G A POP4 Missense_Mutation p.E171K 0.28 tolerated(0.1) benign(0.402) TCGA-W3-AA1Q-06 19 30935630 30935630 C T ZNF536 Silent p.F387F 0.33 TCGA-W3-AA1Q-06 19 30936028 30936028 G A ZNF536 Missense_Mutation p.S520N 0.29 tolerated(0.07) possibly_damaging(0.501) TCGA-W3-AA1Q-06 19 35504508 35504508 C T GRAMD1A Silent p.D261D 0.23 TCGA-W3-AA1Q-06 19 3589902 3589902 C T GIPC3 Missense_Mutation p.P260L 0.40 tolerated(0.41) benign(0) TCGA-W3-AA1Q-06 19 36253225 36253225 C T C19orf55 Missense_Mutation p.H171Y 0.15 deleterious(0.03) benign(0.072) TCGA-W3-AA1Q-06 19 36342195 36342195 G A NPHS1 Silent p.L122L 0.41 TCGA-W3-AA1Q-06 19 3641721 3641721 G A PIP5K1C Missense_Mutation p.P590L 0.28 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-W3-AA1Q-06 19 3736193 3736193 C T TJP3 Silent p.F395F 0.32 TCGA-W3-AA1Q-06 19 3736194 3736194 C T TJP3 Missense_Mutation p.L396F 0.33 tolerated(0.71) benign(0.002) TCGA-W3-AA1Q-06 19 375902 375902 C T THEG Silent p.R23R 0.31 TCGA-W3-AA1Q-06 19 38572421 38572421 C T SIPA1L3 Silent p.P72P 0.56 TCGA-W3-AA1Q-06 19 38996547 38996547 G A RYR1 Silent p.T2834T 0.33 TCGA-W3-AA1Q-06 19 39013901 39013901 C T RYR1 Silent p.I3464I 0.36 TCGA-W3-AA1Q-06 19 39787498 39787498 G A IFNL1 Silent p.G75G 0.29 TCGA-W3-AA1Q-06 19 39913847 39913847 C T PLEKHG2 Missense_Mutation p.P718L 0.39 tolerated_low_confidence(0.12) benign(0.004) TCGA-W3-AA1Q-06 19 41450266 41450266 T C AC092071.1 5'Flank 0.33 TCGA-W3-AA1Q-06 19 41737160 41737160 C T AXL Missense_Mutation p.P247L 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-W3-AA1Q-06 19 42259600 42259600 C T CEACAM6 Silent p.V18V 0.40 TCGA-W3-AA1Q-06 19 43257483 43257483 G A PSG8 3'Flank 0.17 TCGA-W3-AA1Q-06 19 43430771 43430771 G C PSG7 Nonsense_Mutation p.Y269* 0.03 TCGA-W3-AA1Q-06 19 44536325 44536325 C T ZNF222 Silent p.V206V 0.32 TCGA-W3-AA1Q-06 19 45015103 45015103 C T CEACAM20 RNA 0.30 TCGA-W3-AA1Q-06 19 46307920 46307920 G A RSPH6A Missense_Mutation p.P415S 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 19 47880460 47880460 C T DHX34 Silent p.L901L 0.35 TCGA-W3-AA1Q-06 19 47969504 47969504 C T SLC8A2 Missense_Mutation p.V53M 0.48 deleterious(0.05) possibly_damaging(0.663) TCGA-W3-AA1Q-06 19 47986397 47986397 C T KPTN Intron 0.29 TCGA-W3-AA1Q-06 19 48378034 48378034 C T SULT2A1 Missense_Mutation p.E209K 0.27 deleterious(0.03) possibly_damaging(0.564) TCGA-W3-AA1Q-06 19 49129440 49129440 C T SPHK2 Missense_Mutation p.S111L 0.28 tolerated(0.32) benign(0.044) TCGA-W3-AA1Q-06 19 50031915 50031915 G A RCN3 Silent p.R62R 0.34 TCGA-W3-AA1Q-06 19 50154413 50154413 C T SCAF1 Missense_Mutation p.S256F 0.44 unknown(0) TCGA-W3-AA1Q-06 19 51875234 51875234 G A NKG7 Silent p.F133F 0.40 TCGA-W3-AA1Q-06 19 51920001 51920001 G A SIGLEC10 Missense_Mutation p.H209Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1Q-06 19 52249756 52249756 C T FPR1 Silent p.V164V 0.26 TCGA-W3-AA1Q-06 19 53958612 53958612 C T ZNF761 RNA 0.20 TCGA-W3-AA1Q-06 19 54312913 54312913 C T NLRP12 Missense_Mutation p.G667D 0.25 tolerated(0.14) probably_damaging(0.972) TCGA-W3-AA1Q-06 19 54598483 54598483 G A OSCAR 3'UTR 0.45 TCGA-W3-AA1Q-06 19 54780284 54780284 G A LILRB2 Missense_Mutation p.P504S 0.27 tolerated(0.12) possibly_damaging(0.894) TCGA-W3-AA1Q-06 19 55446002 55446002 C T NLRP7 Missense_Mutation p.E776K 0.37 tolerated(0.15) benign(0.003) TCGA-W3-AA1Q-06 19 55756530 55756530 G A PPP6R1 Silent p.V192V 0.42 TCGA-W3-AA1Q-06 19 55966702 55966702 G T ISOC2 Missense_Mutation p.P131Q 0.28 deleterious_low_confidence(0) benign(0.041) TCGA-W3-AA1Q-06 19 56319229 56319229 G A NLRP11 Missense_Mutation p.R665C 0.27 deleterious(0) possibly_damaging(0.858) TCGA-W3-AA1Q-06 19 56320774 56320774 G A NLRP11 Missense_Mutation p.A401V 0.25 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1Q-06 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.38 deleterious(0) possibly_damaging(0.882) TCGA-W3-AA1Q-06 19 56459305 56459305 C T NLRP8 Missense_Mutation p.P13S 0.32 tolerated_low_confidence(0.51) possibly_damaging(0.641) TCGA-W3-AA1Q-06 19 6711073 6711073 C T C3 Silent p.G468G 0.37 TCGA-W3-AA1Q-06 19 7677786 7677786 G A CAMSAP3 Missense_Mutation p.D830N 0.32 tolerated(1) benign(0.292) TCGA-W3-AA1Q-06 19 8137042 8137042 C T FBN3 Missense_Mutation p.D2660N 0.33 tolerated(0.14) benign(0.003) TCGA-W3-AA1Q-06 19 828240 828240 C T AZU1 Silent p.P23P 0.29 TCGA-W3-AA1Q-06 19 8968931 8968931 C T MUC16 Missense_Mutation p.R14362Q 0.43 possibly_damaging(0.588) TCGA-W3-AA1Q-06 19 9027230 9027230 C T MUC16 Missense_Mutation p.S12219N 0.35 benign(0.275) TCGA-W3-AA1Q-06 19 9046299 9046299 G A MUC16 Missense_Mutation p.P11778S 0.29 benign(0.02) TCGA-W3-AA1Q-06 19 9061788 9061788 G A MUC16 Missense_Mutation p.P8553L 0.38 unknown(0) TCGA-W3-AA1Q-06 19 9064044 9064044 G A MUC16 Missense_Mutation p.S7801F 0.32 unknown(0) TCGA-W3-AA1Q-06 19 9066552 9066552 G A MUC16 Missense_Mutation p.S6965F 0.36 unknown(0) TCGA-W3-AA1Q-06 19 9071745 9071745 G A MUC16 Missense_Mutation p.S5234F 0.38 unknown(0) TCGA-W3-AA1Q-06 19 9085587 9085587 G A MUC16 Silent p.G2076G 0.33 TCGA-W3-AA1Q-06 19 9237492 9237492 G A OR7G3 Silent p.I45I 0.28 TCGA-W3-AA1Q-06 1 10057345 10057345 C T RBP7 Missense_Mutation p.T10I 0.21 tolerated(0.11) benign(0.002) TCGA-W3-AA1Q-06 1 101188690 101188690 T C VCAM1 Missense_Mutation p.L152S 0.11 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 1 103345383 103345383 G A COL11A1 Silent p.F1710F 0.30 TCGA-W3-AA1Q-06 1 110085860 110085860 C T GPR61 Silent p.A72A 0.29 TCGA-W3-AA1Q-06 1 111957063 111957063 C A OVGP1 3'UTR 0.41 TCGA-W3-AA1Q-06 1 112318660 112318660 C T KCND3 3'UTR 0.42 TCGA-W3-AA1Q-06 1 112524426 112524426 C T KCND3 Missense_Mutation p.R308Q 0.44 tolerated(0.17) possibly_damaging(0.553) TCGA-W3-AA1Q-06 1 117146392 117146392 G A IGSF3 Missense_Mutation p.S513L 0.32 tolerated(0.29) benign(0.02) TCGA-W3-AA1Q-06 1 118502007 118502007 C T WDR3 Silent p.S923S 0.35 TCGA-W3-AA1Q-06 1 118539104 118539104 C T SPAG17 Missense_Mutation p.D1648N 0.29 tolerated(0.06) probably_damaging(0.966) TCGA-W3-AA1Q-06 1 11884550 11884550 C T CLCN6 Silent p.F196F 0.35 TCGA-W3-AA1Q-06 1 119467283 119467283 C T TBX15 Missense_Mutation p.D121N 0.34 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1Q-06 1 1226931 1226931 G A SCNN1D Missense_Mutation p.G784R 0.27 tolerated(0.54) benign(0.001) TCGA-W3-AA1Q-06 1 12820830 12820830 G A C1orf158 Silent p.R177R 0.26 TCGA-W3-AA1Q-06 1 12939513 12939513 C T PRAMEF4 Nonsense_Mutation p.W430* 0.33 TCGA-W3-AA1Q-06 1 13475075 13475075 G A PRAMEF18 Nonsense_Mutation p.Q352* 0.35 TCGA-W3-AA1Q-06 1 147380233 147380233 G A GJA8 Missense_Mutation p.D51N 0.58 deleterious(0.05) possibly_damaging(0.545) TCGA-W3-AA1Q-06 1 150675783 150675783 T C HORMAD1 Intron 0.39 TCGA-W3-AA1Q-06 1 152276524 152276524 G A FLG Missense_Mutation p.S3613L 0.20 unknown(0) TCGA-W3-AA1Q-06 1 152283599 152283599 C T FLG Missense_Mutation p.E1255K 0.28 possibly_damaging(0.621) TCGA-W3-AA1Q-06 1 152944568 152944568 C T SPRR4 Missense_Mutation p.P68S 0.46 deleterious_low_confidence(0.04) unknown(0) TCGA-W3-AA1Q-06 1 153347003 153347003 C T S100A12 Silent p.K22K 0.19 TCGA-W3-AA1Q-06 1 154520266 154520266 C A TDRD10 3'UTR 0.20 TCGA-W3-AA1Q-06 1 155026870 155026870 C T ADAM15 Missense_Mutation p.S167L 0.21 tolerated(0.58) possibly_damaging(0.746) TCGA-W3-AA1Q-06 1 155447728 155447728 G A ASH1L Missense_Mutation p.H1645Y 0.24 deleterious_low_confidence(0.05) benign(0.114) TCGA-W3-AA1Q-06 1 156038085 156038085 C T RAB25 Silent p.A88A 0.54 TCGA-W3-AA1Q-06 1 156347822 156347822 C T RHBG Missense_Mutation p.S139F 0.47 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1Q-06 1 156554734 156554734 G A TTC24 Silent p.K439K 0.27 TCGA-W3-AA1Q-06 1 156554735 156554735 G A TTC24 Missense_Mutation p.A440T 0.26 tolerated(0.23) benign(0.002) TCGA-W3-AA1Q-06 1 156639592 156639592 A C NES Missense_Mutation p.V1463G 0.19 tolerated(0.24) benign(0.01) TCGA-W3-AA1Q-06 1 157062416 157062416 C T ETV3L 3'UTR 0.18 TCGA-W3-AA1Q-06 1 157491071 157491071 G A FCRL5 Missense_Mutation p.R751C 0.25 tolerated(0.14) benign(0.262) TCGA-W3-AA1Q-06 1 157801668 157801668 G A CD5L 3'UTR 0.43 TCGA-W3-AA1Q-06 1 158368975 158368975 G A OR10T2 Silent p.S94S 0.49 TCGA-W3-AA1Q-06 1 158435387 158435387 C T OR10K1 Silent p.F12F 0.21 TCGA-W3-AA1Q-06 1 158549456 158549456 G A OR10X1 Silent p.F78F 0.14 TCGA-W3-AA1Q-06 1 158605770 158605770 C T SPTA1 Missense_Mutation p.E1789K 0.54 deleterious(0.04) benign(0.039) TCGA-W3-AA1Q-06 1 158644161 158644161 G A SPTA1 Silent p.L436L 0.19 TCGA-W3-AA1Q-06 1 158736160 158736160 G A OR6N1 Missense_Mutation p.H105Y 0.21 deleterious(0.03) probably_damaging(0.985) TCGA-W3-AA1Q-06 1 158815391 158815391 G A MNDA Silent p.Q195Q 0.24 TCGA-W3-AA1Q-06 1 160141452 160141452 G A ATP1A4 Missense_Mutation p.D587N 0.53 tolerated(0.14) benign(0.001) TCGA-W3-AA1Q-06 1 160766014 160766014 C T LY9 Missense_Mutation p.P13S 0.24 tolerated(0.06) possibly_damaging(0.897) TCGA-W3-AA1Q-06 1 16101328 16101328 G A FBLIM1 Silent p.G309G 0.38 TCGA-W3-AA1Q-06 1 16356512 16356512 G A CLCNKA Silent p.E450E 0.25 TCGA-W3-AA1Q-06 1 165179953 165179953 G A LMX1A Nonsense_Mutation p.Q244* 0.21 TCGA-W3-AA1Q-06 1 168549308 168549308 G A XCL1 Silent p.G23G 0.23 TCGA-W3-AA1Q-06 1 171249949 171249949 G A FMO1 Missense_Mutation p.G218R 0.20 deleterious(0) benign(0.157) TCGA-W3-AA1Q-06 1 171527085 171527085 C T PRRC2C Missense_Mutation p.P1943L 0.27 possibly_damaging(0.87) TCGA-W3-AA1Q-06 1 171890908 171890908 C T DNM3 Missense_Mutation p.S61L 0.72 deleterious(0) probably_damaging(0.961) TCGA-W3-AA1Q-06 1 175049403 175049403 C T TNN Missense_Mutation p.P297S 0.60 tolerated(0.24) probably_damaging(0.973) TCGA-W3-AA1Q-06 1 175299237 175299237 G A TNR Missense_Mutation p.R1256C 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 175348808 175348808 C T TNR Missense_Mutation p.D615N 0.55 tolerated(0.05) probably_damaging(0.999) TCGA-W3-AA1Q-06 1 176015351 176015351 G A RFWD2 Missense_Mutation p.P463S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 176671853 176671853 G A PAPPA2 Missense_Mutation p.G1116E 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 176709158 176709158 A T PAPPA2 Missense_Mutation p.N1326I 0.51 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1Q-06 1 176769256 176769256 C T PAPPA2 Silent p.I1730I 0.21 TCGA-W3-AA1Q-06 1 176837984 176837984 G A ASTN1 Missense_Mutation p.P1215S 0.19 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1Q-06 1 176905505 176905505 C T ASTN1 Silent p.G793G 0.17 TCGA-W3-AA1Q-06 1 176905506 176905506 C T ASTN1 Missense_Mutation p.G793E 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 177001767 177001767 G A ASTN1 Silent p.T230T 0.21 TCGA-W3-AA1Q-06 1 178482235 178482235 C T TEX35 5'UTR 0.46 TCGA-W3-AA1Q-06 1 180775197 180775197 G C XPR1 Splice_Site p.X150_splice 0.50 TCGA-W3-AA1Q-06 1 180885641 180885641 C T KIAA1614 Silent p.F134F 0.62 TCGA-W3-AA1Q-06 1 182635130 182635130 G A RGS8 Missense_Mutation p.S74F 0.52 deleterious(0) possibly_damaging(0.871) TCGA-W3-AA1Q-06 1 184772804 184772804 G A FAM129A Missense_Mutation p.T490I 0.22 deleterious(0) possibly_damaging(0.897) TCGA-W3-AA1Q-06 1 186276694 186276694 G A PRG4 Missense_Mutation p.E615K 0.52 unknown(0) TCGA-W3-AA1Q-06 1 18808315 18808315 G A KLHDC7A Silent p.G280G 0.32 TCGA-W3-AA1Q-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.56 deleterious(0) possibly_damaging(0.871) TCGA-W3-AA1Q-06 1 190129815 190129815 G A BRINP3 Silent p.I389I 0.19 TCGA-W3-AA1Q-06 1 190423914 190423914 G A BRINP3 Missense_Mutation p.S36L 0.33 tolerated_low_confidence(0.44) benign(0.011) TCGA-W3-AA1Q-06 1 196659259 196659259 G A CFH Missense_Mutation p.G409D 0.22 tolerated(0.17) benign(0.268) TCGA-W3-AA1Q-06 1 196794640 196794640 G A CFHR1 Missense_Mutation p.G31E 0.58 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 1 196887467 196887467 G A CFHR4 Silent p.A555A 0.58 TCGA-W3-AA1Q-06 1 197297556 197297556 C T CRB1 Silent p.S25S 0.52 TCGA-W3-AA1Q-06 1 197411531 197411531 G A CRB1 Intron 0.29 TCGA-W3-AA1Q-06 1 197890740 197890740 G A LHX9 Silent p.R228R 0.45 TCGA-W3-AA1Q-06 1 199997000 199997000 G A NR5A2 Missense_Mutation p.D9N 0.31 tolerated_low_confidence(0.56) benign(0) TCGA-W3-AA1Q-06 1 200959848 200959848 C T KIF21B Silent p.K897K 0.19 TCGA-W3-AA1Q-06 1 200967584 200967584 C T KIF21B Missense_Mutation p.E669K 0.24 tolerated(0.12) probably_damaging(0.986) TCGA-W3-AA1Q-06 1 200969714 200969714 C T KIF21B Missense_Mutation p.A497T 0.40 deleterious(0.01) benign(0.089) TCGA-W3-AA1Q-06 1 201013503 201013503 G A CACNA1S Silent p.L1584L 0.50 TCGA-W3-AA1Q-06 1 201832581 201832581 C T IPO9 Missense_Mutation p.P492S 0.22 deleterious(0.02) possibly_damaging(0.46) TCGA-W3-AA1Q-06 1 203186161 203186161 G A CHIT1 Silent p.F419F 0.45 TCGA-W3-AA1Q-06 1 203734697 203734697 G A LAX1 Missense_Mutation p.D2N 0.19 tolerated(0.2) probably_damaging(0.95) TCGA-W3-AA1Q-06 1 204586840 204586840 C T LRRN2 3'UTR 0.21 TCGA-W3-AA1Q-06 1 205899029 205899029 G A SLC26A9 Silent p.S236S 0.22 TCGA-W3-AA1Q-06 1 205899181 205899181 C T SLC26A9 Missense_Mutation p.G186S 0.47 tolerated(0.1) benign(0.027) TCGA-W3-AA1Q-06 1 206224958 206224958 C T AVPR1B Missense_Mutation p.S173F 0.46 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 207890960 207890960 C T CR1L Silent p.I522I 0.52 TCGA-W3-AA1Q-06 1 210970891 210970891 G A KCNH1 Missense_Mutation p.S625F 0.58 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1Q-06 1 212179992 212179992 C T INTS7 Missense_Mutation p.E290K 0.55 tolerated(0.53) benign(0.003) TCGA-W3-AA1Q-06 1 212619355 212619355 C T NENF 3'UTR 0.22 TCGA-W3-AA1Q-06 1 215844624 215844624 C T USH2A Missense_Mutation p.R4608Q 0.22 benign(0.354) TCGA-W3-AA1Q-06 1 216420025 216420025 G A USH2A Missense_Mutation p.S904F 0.26 benign(0.033) TCGA-W3-AA1Q-06 1 216680254 216680254 G A ESRRG 3'UTR 0.36 TCGA-W3-AA1Q-06 1 22173900 22173900 G A HSPG2 Missense_Mutation p.A2704V 0.26 probably_damaging(0.909) TCGA-W3-AA1Q-06 1 22178087 22178087 G A HSPG2 Silent p.A2370A 0.35 TCGA-W3-AA1Q-06 1 224586672 224586672 C T WDR26 Missense_Mutation p.S495N 0.44 tolerated(0.3) benign(0.003) TCGA-W3-AA1Q-06 1 224586674 224586674 C T WDR26 Silent p.L494L 0.42 TCGA-W3-AA1Q-06 1 226352575 226352575 C T ACBD3 Missense_Mutation p.V162I 0.22 tolerated(0.5) benign(0.299) TCGA-W3-AA1Q-06 1 226352578 226352578 A C ACBD3 Missense_Mutation p.F161V 0.21 deleterious(0) possibly_damaging(0.637) TCGA-W3-AA1Q-06 1 227198659 227198659 G A CDC42BPA Intron 0.29 TCGA-W3-AA1Q-06 1 228005164 228005164 G A PRSS38 Missense_Mutation p.G189E 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 228109388 228109388 C T WNT9A Missense_Mutation p.G310D 0.19 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1Q-06 1 228480406 228480406 C T OBSCN Missense_Mutation p.R4025C 0.50 benign(0.001) TCGA-W3-AA1Q-06 1 229773737 229773737 C T URB2 Missense_Mutation p.A1126V 0.27 tolerated(0.22) benign(0.019) TCGA-W3-AA1Q-06 1 23233446 23233446 T A EPHB2 Missense_Mutation p.L712H 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 236900425 236900425 G A ACTN2 Missense_Mutation p.E263K 0.43 deleterious(0.03) possibly_damaging(0.557) TCGA-W3-AA1Q-06 1 237982430 237982430 G A RYR2 Missense_Mutation p.R4843Q 0.21 possibly_damaging(0.857) TCGA-W3-AA1Q-06 1 240371996 240371996 C T FMN2 Missense_Mutation p.P1295L 0.48 probably_damaging(1) TCGA-W3-AA1Q-06 1 2445452 2445452 G A PANK4 Missense_Mutation p.P522S 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-W3-AA1Q-06 1 247875858 247875858 G A OR6F1 Missense_Mutation p.S67F 0.30 deleterious(0.01) probably_damaging(0.95) TCGA-W3-AA1Q-06 1 248039747 248039747 G A TRIM58 Missense_Mutation p.D473N 0.52 tolerated_low_confidence(0.07) benign(0.021) TCGA-W3-AA1Q-06 1 24978993 24978993 C T SRRM1 Missense_Mutation p.S265F 0.41 unknown(0) TCGA-W3-AA1Q-06 1 24996793 24996793 C T SRRM1 Missense_Mutation p.P796L 0.29 unknown(0) TCGA-W3-AA1Q-06 1 26514794 26514794 G A CNKSR1 Silent p.E508E 0.29 TCGA-W3-AA1Q-06 1 26514795 26514795 G A CNKSR1 Missense_Mutation p.E509K 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 1 28060612 28060612 C T FAM76A Missense_Mutation p.S125L 0.28 deleterious(0.01) possibly_damaging(0.855) TCGA-W3-AA1Q-06 1 32049125 32049125 C T TINAGL1 Silent p.R177R 0.20 TCGA-W3-AA1Q-06 1 3342704 3342704 G A PRDM16 Missense_Mutation p.E1067K 0.28 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1Q-06 1 34006163 34006163 C T CSMD2 Missense_Mutation p.G3054E 0.40 tolerated(0.47) possibly_damaging(0.764) TCGA-W3-AA1Q-06 1 36563322 36563322 C T COL8A2 Missense_Mutation p.G654S 0.36 deleterious(0.02) probably_damaging(0.962) TCGA-W3-AA1Q-06 1 41461777 41461777 C T CTPS1 Intron 0.25 TCGA-W3-AA1Q-06 1 41514419 41514419 G A SCMH1 Missense_Mutation p.H407Y 0.33 deleterious(0.04) possibly_damaging(0.904) TCGA-W3-AA1Q-06 1 42050305 42050305 G A HIVEP3 Missense_Mutation p.A55V 0.33 benign(0.008) TCGA-W3-AA1Q-06 1 43896407 43896407 G A SZT2 Missense_Mutation p.R1517Q 0.31 tolerated(0.06) possibly_damaging(0.867) TCGA-W3-AA1Q-06 1 46651289 46651289 G A TSPAN1 3'UTR 0.43 TCGA-W3-AA1Q-06 1 51778608 51778608 C T TTC39A Missense_Mutation p.E56K 0.35 tolerated(0.14) possibly_damaging(0.885) TCGA-W3-AA1Q-06 1 53555680 53555680 G A SLC1A7 Intron 0.50 TCGA-W3-AA1Q-06 1 55078159 55078159 C T FAM151A Missense_Mutation p.R267K 0.30 tolerated(0.05) probably_damaging(0.951) TCGA-W3-AA1Q-06 1 76190429 76190429 G T ACADM 5'Flank 0.31 TCGA-W3-AA1Q-06 1 7880621 7880621 G A PER3 Silent p.T618T 0.39 TCGA-W3-AA1Q-06 1 86919065 86919065 G A CLCA2 Missense_Mutation p.M723I 0.27 deleterious(0.03) probably_damaging(0.991) TCGA-W3-AA1Q-06 1 87025741 87025741 G A CLCA4 Missense_Mutation p.E96K 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 1 8716108 8716109 - T RERE Frame_Shift_Ins p.S84Vfs*4 0.34 TCGA-W3-AA1Q-06 1 9011668 9011668 G A CA6 Intron 0.15 TCGA-W3-AA1Q-06 1 90152120 90152120 T A LRRC8C Missense_Mutation p.Y30N 0.24 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 1 94476903 94476903 G A ABCA4 Silent p.L1833L 0.24 TCGA-W3-AA1Q-06 1 95310932 95310932 C T SLC44A3 Silent p.F328F 0.31 TCGA-W3-AA1Q-06 1 97250634 97250634 T C PTBP2 Missense_Mutation p.I243T 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-W3-AA1Q-06 20 10277658 10277658 G A SNAP25 Missense_Mutation p.E123K 0.25 tolerated(0.59) possibly_damaging(0.782) TCGA-W3-AA1Q-06 20 10394059 10394059 G A MKKS Missense_Mutation p.S35L 0.28 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1Q-06 20 1551602 1551602 C T SIRPB1 Nonsense_Mutation p.W311* 0.27 TCGA-W3-AA1Q-06 20 18507119 18507119 C T SEC23B Missense_Mutation p.R313C 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 20 20020377 20020377 A G CRNKL1 Missense_Mutation p.F635S 0.26 deleterious(0.05) benign(0.017) TCGA-W3-AA1Q-06 20 2297749 2297749 G A TGM3 Silent p.G235G 0.33 TCGA-W3-AA1Q-06 20 23065155 23065155 G A CD93 Nonsense_Mutation p.Q559* 0.40 TCGA-W3-AA1Q-06 20 2411672 2411672 G A TGM6 Missense_Mutation p.D656N 0.35 tolerated(0.58) benign(0.002) TCGA-W3-AA1Q-06 20 24646047 24646047 C T SYNDIG1 Silent p.F228F 0.29 TCGA-W3-AA1Q-06 20 29960706 29960706 G A DEFB118 Silent p.R35R 0.31 TCGA-W3-AA1Q-06 20 35769645 35769645 G A MROH8 Silent p.L497L 0.32 TCGA-W3-AA1Q-06 20 36768027 36768027 G A TGM2 Missense_Mutation p.R377C 0.36 deleterious(0.04) possibly_damaging(0.745) TCGA-W3-AA1Q-06 20 43629158 43629158 C T STK4 Silent p.N319N 0.30 TCGA-W3-AA1Q-06 20 43995624 43995624 C T SYS1 Missense_Mutation p.P114S 0.32 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1Q-06 20 44681718 44681718 G A SLC12A5 Missense_Mutation p.D857N 0.28 deleterious(0) possibly_damaging(0.83) TCGA-W3-AA1Q-06 20 50307319 50307319 G C ATP9A Missense_Mutation p.P228A 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1Q-06 20 57768658 57768658 C T ZNF831 Missense_Mutation p.P862S 0.32 tolerated(0.57) benign(0.023) TCGA-W3-AA1Q-06 20 6100107 6100107 C T FERMT1 Missense_Mutation p.R32K 0.31 tolerated(0.05) benign(0.021) TCGA-W3-AA1Q-06 20 61939390 61939390 G A COL20A1 Silent p.Q241Q 0.41 TCGA-W3-AA1Q-06 20 61944593 61944593 A C COL20A1 Missense_Mutation p.Y734S 0.21 deleterious(0.02) possibly_damaging(0.856) TCGA-W3-AA1Q-06 20 9400512 9400512 G A PLCB4 Missense_Mutation p.E692K 0.32 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 20 9561040 9561040 C T PAK7 Missense_Mutation p.E248K 0.34 tolerated_low_confidence(0.12) benign(0.174) TCGA-W3-AA1Q-06 21 10996072 10996072 G A TPTE RNA 0.14 TCGA-W3-AA1Q-06 21 10996093 10996093 C T TPTE RNA 0.12 TCGA-W3-AA1Q-06 21 11047490 11047490 C T BAGE2 RNA 0.08 TCGA-W3-AA1Q-06 21 11049466 11049466 C T BAGE2 RNA 0.04 TCGA-W3-AA1Q-06 21 19666755 19666755 C T TMPRSS15 Missense_Mutation p.G773E 0.31 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 21 27945311 27945311 G A CYYR1 5'UTR 0.58 TCGA-W3-AA1Q-06 21 31538660 31538660 C T CLDN17 Silent p.L92L 0.32 TCGA-W3-AA1Q-06 21 31874294 31874294 C T KRTAP19-5 Missense_Mutation p.G39S 0.34 tolerated_low_confidence(0.61) unknown(0) TCGA-W3-AA1Q-06 21 34003948 34003948 G A SYNJ1 Missense_Mutation p.S1399F 0.23 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-W3-AA1Q-06 21 35467418 35467418 G A SLC5A3 5'UTR 0.31 TCGA-W3-AA1Q-06 21 41648069 41648069 C T DSCAM Missense_Mutation p.D771N 0.35 tolerated(0.16) benign(0.142) TCGA-W3-AA1Q-06 21 41668099 41668099 G A DSCAM Missense_Mutation p.P689S 0.26 deleterious(0) possibly_damaging(0.874) TCGA-W3-AA1Q-06 21 43838548 43838548 G A UBASH3A Silent p.V292V 0.34 TCGA-W3-AA1Q-06 21 48019160 48019160 C T S100B 3'UTR 0.47 TCGA-W3-AA1Q-06 22 16256638 16256638 C T POTEH 3'UTR 0.09 TCGA-W3-AA1Q-06 22 17309721 17309721 C T HSFY1P1 RNA 0.20 TCGA-W3-AA1Q-06 22 19220045 19220045 G A CLTCL1 Missense_Mutation p.S533F 0.35 deleterious(0) possibly_damaging(0.602) TCGA-W3-AA1Q-06 22 20819207 20819207 G A KLHL22 Silent p.F350F 0.31 TCGA-W3-AA1Q-06 22 21075644 21075644 C T PI4KA Silent p.Q1686Q 0.36 TCGA-W3-AA1Q-06 22 21330032 21330032 C T AIFM3 Nonsense_Mutation p.R258* 0.28 TCGA-W3-AA1Q-06 22 22786726 22786726 C T IGLV1-36 Silent p.S92S 0.31 TCGA-W3-AA1Q-06 22 23503728 23503728 C T RAB36 Missense_Mutation p.P327S 0.22 tolerated(0.18) benign(0.01) TCGA-W3-AA1Q-06 22 25270457 25270457 C T SGSM1 Missense_Mutation p.S456F 0.30 tolerated(0.08) benign(0.116) TCGA-W3-AA1Q-06 22 26423275 26423275 C T MYO18B Silent p.L2445L 0.31 TCGA-W3-AA1Q-06 22 27019229 27019229 G A CRYBA4 Missense_Mutation p.G24D 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 22 29517344 29517344 G T KREMEN1 Splice_Site p.X118_splice 0.32 TCGA-W3-AA1Q-06 22 29686432 29686432 A G EWSR1 Intron 0.47 TCGA-W3-AA1Q-06 22 29837904 29837904 G A RFPL1 Silent p.L249L 0.08 TCGA-W3-AA1Q-06 22 29837905 29837905 G A RFPL1 Missense_Mutation p.D250N 0.08 tolerated(0.06) probably_damaging(0.92) TCGA-W3-AA1Q-06 22 30863060 30863060 C T SEC14L3 Missense_Mutation p.G143E 0.31 deleterious(0.05) probably_damaging(1) TCGA-W3-AA1Q-06 22 31493309 31493309 C T SMTN Missense_Mutation p.S715F 0.35 deleterious(0) benign(0.04) TCGA-W3-AA1Q-06 22 31536143 31536143 C T PLA2G3 Silent p.R66R 0.30 TCGA-W3-AA1Q-06 22 32586965 32586965 C T RFPL2 Missense_Mutation p.D311N 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-W3-AA1Q-06 22 32586966 32586966 C T RFPL2 Silent p.L310L 0.11 TCGA-W3-AA1Q-06 22 37868509 37868509 G A MFNG Missense_Mutation p.P291S 0.42 tolerated(0.14) benign(0.431) TCGA-W3-AA1Q-06 22 38823478 38823478 C T KCNJ4 Silent p.R220R 0.35 TCGA-W3-AA1Q-06 22 39448808 39448808 C T APOBEC3F 3'UTR 0.26 TCGA-W3-AA1Q-06 22 41753184 41753184 C T ZC3H7B Silent p.L895L 0.27 TCGA-W3-AA1Q-06 22 42126613 42126613 C T MEI1 Silent p.L356L 0.33 TCGA-W3-AA1Q-06 22 46832145 46832145 C T CELSR1 Missense_Mutation p.G1483D 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 22 50167766 50167766 G A BRD1 3'UTR 0.32 TCGA-W3-AA1Q-06 22 50301553 50301553 G A ALG12 Missense_Mutation p.R270C 0.39 probably_damaging(1) TCGA-W3-AA1Q-06 2 102992462 102992462 C T IL18R1 Silent p.F188F 0.37 TCGA-W3-AA1Q-06 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.26 probably_damaging(1) TCGA-W3-AA1Q-06 2 111562961 111562961 G A ACOXL Missense_Mutation p.G248S 0.37 tolerated(0.32) benign(0.212) TCGA-W3-AA1Q-06 2 113332963 113332963 C T POLR1B Missense_Mutation p.T1022I 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 2 113676422 113676422 G A IL37 3'UTR 0.23 TCGA-W3-AA1Q-06 2 116599948 116599948 G A DPP10 3'Flank 0.39 TCGA-W3-AA1Q-06 2 121747995 121747995 C T GLI2 Missense_Mutation p.S1502F 0.40 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1Q-06 2 130785890 130785890 C T FAR2P1 RNA 0.24 TCGA-W3-AA1Q-06 2 132288235 132288235 C T CCDC74A Missense_Mutation p.P127S 0.23 tolerated(0.63) benign(0.009) TCGA-W3-AA1Q-06 2 136537834 136537834 C T UBXN4 Missense_Mutation p.L423F 0.26 tolerated(0.11) benign(0.013) TCGA-W3-AA1Q-06 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.41 tolerated(0.66) probably_damaging(0.964) TCGA-W3-AA1Q-06 2 138163337 138163337 G A THSD7B Silent p.T885T 0.25 TCGA-W3-AA1Q-06 2 138320916 138320916 G A THSD7B Silent p.R1091R 0.29 TCGA-W3-AA1Q-06 2 141122310 141122310 G A LRP1B Missense_Mutation p.S3684F 0.38 possibly_damaging(0.788) TCGA-W3-AA1Q-06 2 141128831 141128831 C T LRP1B Missense_Mutation p.E3598K 0.26 possibly_damaging(0.621) TCGA-W3-AA1Q-06 2 141294171 141294171 C T LRP1B Missense_Mutation p.D2541N 0.38 possibly_damaging(0.822) TCGA-W3-AA1Q-06 2 144194529 144194529 C T ARHGAP15 Silent p.I207I 0.36 TCGA-W3-AA1Q-06 2 152534496 152534496 T G NEB Missense_Mutation p.D1154A 0.37 possibly_damaging(0.495) TCGA-W3-AA1Q-06 2 16082222 16082222 G A MYCN Missense_Mutation p.M12I 0.41 tolerated(0.4) possibly_damaging(0.855) TCGA-W3-AA1Q-06 2 165349516 165349516 C T GRB14 3'UTR 0.29 TCGA-W3-AA1Q-06 2 165947437 165947437 C T SCN3A Silent p.G1742G 0.31 TCGA-W3-AA1Q-06 2 166908440 166908440 C T SCN1A Missense_Mutation p.M251I 0.27 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1Q-06 2 167162345 167162345 G A SCN9A Missense_Mutation p.R185C 0.31 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 2 168102509 168102509 A G XIRP2 Missense_Mutation p.E1536G 0.12 possibly_damaging(0.894) TCGA-W3-AA1Q-06 2 170027147 170027147 C T LRP2 Missense_Mutation p.R3765Q 0.38 possibly_damaging(0.595) TCGA-W3-AA1Q-06 2 170462562 170462562 C T PPIG Silent p.T50T 0.38 TCGA-W3-AA1Q-06 2 171225744 171225744 G A MYO3B Silent p.K276K 0.21 TCGA-W3-AA1Q-06 2 175440003 175440003 C T WIPF1 Missense_Mutation p.G96E 0.29 tolerated(0.07) possibly_damaging(0.511) TCGA-W3-AA1Q-06 2 175440004 175440004 C T WIPF1 Missense_Mutation p.G96R 0.29 tolerated(0.19) possibly_damaging(0.696) TCGA-W3-AA1Q-06 2 175614690 175614690 G A CHRNA1 Missense_Mutation p.P354L 0.31 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1Q-06 2 176857102 176857102 T A KIAA1715 Missense_Mutation p.L38F 0.29 deleterious(0.02) possibly_damaging(0.877) TCGA-W3-AA1Q-06 2 176964699 176964699 C T HOXD12 Missense_Mutation p.S57F 0.70 deleterious(0.01) possibly_damaging(0.756) TCGA-W3-AA1Q-06 2 179395559 179395559 C T TTN Silent p.P35261P 0.43 TCGA-W3-AA1Q-06 2 179440423 179440423 C T TTN Missense_Mutation p.R23479Q 0.22 TCGA-W3-AA1Q-06 2 179592976 179592976 T C TTN Silent p.A6525A 0.38 TCGA-W3-AA1Q-06 2 179610715 179610715 C T TTN Intron 0.29 TCGA-W3-AA1Q-06 2 179640797 179640797 T A TTN Missense_Mutation p.R1932W 0.40 TCGA-W3-AA1Q-06 2 179641814 179641814 G A TTN Intron 0.39 TCGA-W3-AA1Q-06 2 18113195 18113195 C T KCNS3 Missense_Mutation p.S307L 0.28 deleterious(0) probably_damaging(0.943) TCGA-W3-AA1Q-06 2 188228211 188228211 C T CALCRL Silent p.R173R 0.32 TCGA-W3-AA1Q-06 2 197185120 197185120 C T HECW2 Missense_Mutation p.D310N 0.24 deleterious(0) possibly_damaging(0.494) TCGA-W3-AA1Q-06 2 198949272 198949272 G A PLCL1 Missense_Mutation p.G344E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 2 201485913 201485913 G A AOX1 Missense_Mutation p.D649N 0.28 deleterious(0.04) benign(0.219) TCGA-W3-AA1Q-06 2 201523922 201523922 A T AOX1 Missense_Mutation p.N1069I 0.33 tolerated(0.3) possibly_damaging(0.653) TCGA-W3-AA1Q-06 2 207474668 207474668 C T ADAM23 Silent p.I798I 0.29 TCGA-W3-AA1Q-06 2 212286772 212286772 G A ERBB4 Missense_Mutation p.S975L 0.33 deleterious(0) benign(0.269) TCGA-W3-AA1Q-06 2 21231700 21231700 C T APOB Silent p.L2680L 0.36 TCGA-W3-AA1Q-06 2 215275070 215275070 C T SPAG16 3'UTR 0.33 TCGA-W3-AA1Q-06 2 215843045 215843045 C T ABCA12 Missense_Mutation p.R1708K 0.30 tolerated(0.34) benign(0.033) TCGA-W3-AA1Q-06 2 219029904 219029904 C T CXCR1 Missense_Mutation p.D11N 0.36 tolerated(0.31) benign(0.001) TCGA-W3-AA1Q-06 2 219313984 219313984 G A VIL1 Silent p.G803G 0.37 TCGA-W3-AA1Q-06 2 220290785 220290785 C T DES 3'UTR 0.29 TCGA-W3-AA1Q-06 2 222291185 222291185 C T EPHA4 Missense_Mutation p.E949K 0.30 deleterious(0.01) benign(0.025) TCGA-W3-AA1Q-06 2 223806250 223806250 C T ACSL3 Missense_Mutation p.R681C 0.36 tolerated(0.06) benign(0.001) TCGA-W3-AA1Q-06 2 226273783 226273783 G A NYAP2 Missense_Mutation p.E63K 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-W3-AA1Q-06 2 227942694 227942694 G A COL4A4 Missense_Mutation p.P635S 0.31 probably_damaging(0.96) TCGA-W3-AA1Q-06 2 227963446 227963446 G A COL4A4 Missense_Mutation p.P390S 0.40 probably_damaging(0.96) TCGA-W3-AA1Q-06 2 228497787 228497787 G A C2orf83 Silent p.A5A 0.35 TCGA-W3-AA1Q-06 2 228881190 228881190 C T SPHKAP Silent p.S1460S 0.37 TCGA-W3-AA1Q-06 2 230672456 230672456 G A TRIP12 Missense_Mutation p.P774S 0.38 tolerated(0.41) benign(0.168) TCGA-W3-AA1Q-06 2 231222633 231222633 T A SP140L Missense_Mutation p.F74Y 0.40 deleterious(0.01) benign(0.395) TCGA-W3-AA1Q-06 2 232390095 232390095 G A NMUR1 Missense_Mutation p.H314Y 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 2 232458893 232458893 C T C2orf57 3'UTR 0.29 TCGA-W3-AA1Q-06 2 232602765 232602765 G A PDE6D Missense_Mutation p.R75C 0.37 deleterious(0.05) benign(0.123) TCGA-W3-AA1Q-06 2 233633420 233633420 G C KCNJ13 Missense_Mutation p.I188M 0.13 tolerated(1) benign(0.013) TCGA-W3-AA1Q-06 2 234094518 234094518 G A INPP5D Missense_Mutation p.E757K 0.38 tolerated(0.06) probably_damaging(0.934) TCGA-W3-AA1Q-06 2 237489920 237489920 C T ACKR3 Missense_Mutation p.A271V 0.27 tolerated(1) benign(0.004) TCGA-W3-AA1Q-06 2 241536141 241536141 C T CAPN10 Silent p.L509L 0.30 TCGA-W3-AA1Q-06 2 27465803 27465803 C T CAD Nonsense_Mutation p.Q2148* 0.27 TCGA-W3-AA1Q-06 2 27799745 27799745 G A C2orf16 Silent p.V102V 0.35 TCGA-W3-AA1Q-06 2 29404440 29404440 C T CLIP4 Missense_Mutation p.S600L 0.31 tolerated(0.09) benign(0.132) TCGA-W3-AA1Q-06 2 29420539 29420539 G A ALK Silent p.S1314S 0.31 TCGA-W3-AA1Q-06 2 31165143 31165143 G A GALNT14 Silent p.F290F 0.51 TCGA-W3-AA1Q-06 2 33745745 33745745 C T RASGRP3 Missense_Mutation p.S121F 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA1Q-06 2 3391487 3391487 C T TRAPPC12 Silent p.F31F 0.50 TCGA-W3-AA1Q-06 2 44513046 44513046 C T SLC3A1 Intron 0.37 TCGA-W3-AA1Q-06 2 48026711 48026711 A T MSH6 Missense_Mutation p.D530V 0.41 deleterious(0.01) possibly_damaging(0.776) TCGA-W3-AA1Q-06 2 54128642 54128642 G A PSME4 Missense_Mutation p.H1044Y 0.27 tolerated(0.12) possibly_damaging(0.61) TCGA-W3-AA1Q-06 2 60688301 60688301 C T BCL11A Silent p.R582R 0.39 TCGA-W3-AA1Q-06 2 71816720 71816720 C T DYSF Intron 0.40 TCGA-W3-AA1Q-06 2 71838719 71838719 A G DYSF Missense_Mutation p.N1395S 0.26 tolerated(0.11) possibly_damaging(0.646) TCGA-W3-AA1Q-06 2 79365162 79365162 G A REG1P RNA 0.36 TCGA-W3-AA1Q-06 2 8891681 8891681 C T KIDINS220 Silent p.R1035R 0.24 TCGA-W3-AA1Q-06 2 89399825 89399825 C T IGKV1-16 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.03) benign(0.24) TCGA-W3-AA1Q-06 2 90121901 90121901 G A IGKV1D-17 Missense_Mutation p.R40K 0.38 tolerated(0.15) benign(0.026) TCGA-W3-AA1Q-06 2 90139107 90139107 G A IGKV1D-16 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-W3-AA1Q-06 2 9475268 9475268 G A ASAP2 Missense_Mutation p.R270Q 0.25 deleterious(0.02) possibly_damaging(0.82) TCGA-W3-AA1Q-06 2 99294906 99294906 G A MGAT4A Silent p.F41F 0.31 TCGA-W3-AA1Q-06 2 99689523 99689523 G A TSGA10 Missense_Mutation p.S299L 0.44 tolerated(0.06) benign(0.208) TCGA-W3-AA1Q-06 3 100413801 100413801 G A GPR128 Missense_Mutation p.E784K 0.46 tolerated(0.12) benign(0.174) TCGA-W3-AA1Q-06 3 105260522 105260522 G A ALCAM Missense_Mutation p.D302N 0.18 tolerated(0.64) benign(0.241) TCGA-W3-AA1Q-06 3 107096368 107096368 C T CCDC54 5'UTR 0.31 TCGA-W3-AA1Q-06 3 108072376 108072376 G A HHLA2 Missense_Mutation p.G56E 0.43 tolerated(0.24) benign(0.275) TCGA-W3-AA1Q-06 3 108147716 108147716 C T MYH15 Missense_Mutation p.D1129N 0.36 tolerated(0.08) benign(0.005) TCGA-W3-AA1Q-06 3 109047843 109047843 G A DPPA4 Missense_Mutation p.P258S 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 3 112648130 112648130 G A CD200R1 Missense_Mutation p.R143C 0.28 deleterious(0.01) possibly_damaging(0.528) TCGA-W3-AA1Q-06 3 113311875 113311875 G A SIDT1 Missense_Mutation p.G342E 0.33 tolerated(1) benign(0.008) TCGA-W3-AA1Q-06 3 119112388 119112388 C T ARHGAP31 Missense_Mutation p.S319L 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1Q-06 3 119334902 119334902 C T PLA1A Silent p.V236V 0.37 TCGA-W3-AA1Q-06 3 119634902 119634902 A T GSK3B Nonsense_Mutation p.C199* 0.23 TCGA-W3-AA1Q-06 3 120976036 120976036 T C STXBP5L Missense_Mutation p.V563A 0.28 tolerated(0.27) benign(0.002) TCGA-W3-AA1Q-06 3 120976112 120976112 G A STXBP5L Silent p.R588R 0.46 TCGA-W3-AA1Q-06 3 121100163 121100163 C T STXBP5L Missense_Mutation p.R815C 0.38 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1Q-06 3 121712524 121712524 G A ILDR1 Missense_Mutation p.P358S 0.41 tolerated(0.24) benign(0.003) TCGA-W3-AA1Q-06 3 123699298 123699298 G A ROPN1 Missense_Mutation p.P11S 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 3 124141712 124141712 T G KALRN Missense_Mutation p.L864V 0.34 deleterious(0.01) probably_damaging(0.91) TCGA-W3-AA1Q-06 3 126062539 126062539 G A KLF15 3'UTR 0.25 TCGA-W3-AA1Q-06 3 127646746 127646746 A G KBTBD12 Missense_Mutation p.N404D 0.32 tolerated(0.34) possibly_damaging(0.524) TCGA-W3-AA1Q-06 3 129127504 129127504 C T EFCAB12 Silent p.E411E 0.24 TCGA-W3-AA1Q-06 3 130284272 130284272 G A COL6A6 Missense_Mutation p.G366S 0.35 tolerated(0.26) probably_damaging(1) TCGA-W3-AA1Q-06 3 130463616 130463616 G C PIK3R4 Missense_Mutation p.I149M 0.26 deleterious(0) possibly_damaging(0.905) TCGA-W3-AA1Q-06 3 132061415 132061415 G A ACPP Missense_Mutation p.G192E 0.33 deleterious(0.03) benign(0.078) TCGA-W3-AA1Q-06 3 136183771 136183771 G A STAG1 Missense_Mutation p.S422L 0.22 deleterious(0) possibly_damaging(0.906) TCGA-W3-AA1Q-06 3 13860436 13860436 G A WNT7A 3'UTR 0.39 TCGA-W3-AA1Q-06 3 141678551 141678551 G A TFDP2 Missense_Mutation p.S339F 0.37 deleterious(0.03) benign(0.138) TCGA-W3-AA1Q-06 3 142031542 142031542 C A XRN1 Silent p.V1572V 0.23 TCGA-W3-AA1Q-06 3 142226892 142226892 G A ATR Nonsense_Mutation p.Q1638* 0.38 TCGA-W3-AA1Q-06 3 142567065 142567065 C T PCOLCE2 Missense_Mutation p.E148K 0.34 tolerated(0.83) benign(0.075) TCGA-W3-AA1Q-06 3 150403585 150403585 G A FAM194A Missense_Mutation p.P243S 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-W3-AA1Q-06 3 15115657 15115657 G A ZFYVE20 Missense_Mutation p.P663S 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1Q-06 3 152554295 152554295 A G P2RY1 Missense_Mutation p.R242G 0.25 deleterious(0) benign(0.185) TCGA-W3-AA1Q-06 3 157146176 157146176 C T VEPH1 Missense_Mutation p.E211K 0.37 deleterious(0.01) benign(0.24) TCGA-W3-AA1Q-06 3 164704955 164704955 G A SI Missense_Mutation p.S1723F 0.35 tolerated(0.45) benign(0.008) TCGA-W3-AA1Q-06 3 167293924 167293924 C T WDR49 Missense_Mutation p.D90N 0.35 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1Q-06 3 167750367 167750367 T C GOLIM4 Missense_Mutation p.K373E 0.28 tolerated(0.26) benign(0.341) TCGA-W3-AA1Q-06 3 168845729 168845729 C T MECOM Missense_Mutation p.D121N 0.30 tolerated(0.08) possibly_damaging(0.476) TCGA-W3-AA1Q-06 3 170198608 170198608 G A SLC7A14 Missense_Mutation p.S488F 0.34 tolerated(0.08) possibly_damaging(0.862) TCGA-W3-AA1Q-06 3 17053615 17053615 C T PLCL2 Missense_Mutation p.P800L 0.31 tolerated(0.07) benign(0.26) TCGA-W3-AA1Q-06 3 170843861 170843861 C T TNIK Missense_Mutation p.G618D 0.40 tolerated(0.45) probably_damaging(0.997) TCGA-W3-AA1Q-06 3 176768277 176768277 G A TBL1XR1 Silent p.L183L 0.30 TCGA-W3-AA1Q-06 3 178962379 178962379 C T KCNMB3 Silent p.G121G 0.44 TCGA-W3-AA1Q-06 3 180359968 180359968 G A CCDC39 Missense_Mutation p.L563F 0.23 tolerated(0.05) probably_damaging(0.972) TCGA-W3-AA1Q-06 3 183824555 183824555 C T HTR3E 3'Flank 0.28 TCGA-W3-AA1Q-06 3 186395387 186395387 C T HRG Silent p.H431H 0.33 TCGA-W3-AA1Q-06 3 189526092 189526092 G A TP63 Missense_Mutation p.S119N 0.26 tolerated(0.09) benign(0.008) TCGA-W3-AA1Q-06 3 195516503 195516503 G T MUC4 Missense_Mutation p.Q650K 0.36 unknown(0) TCGA-W3-AA1Q-06 3 19575182 19575182 G A KCNH8 Missense_Mutation p.R972Q 0.27 tolerated_low_confidence(0.27) benign(0.004) TCGA-W3-AA1Q-06 3 195965541 195965541 G A PCYT1A 3'UTR 0.20 TCGA-W3-AA1Q-06 3 3137086 3137086 C T IL5RA Missense_Mutation p.G251E 0.29 tolerated(0.18) benign(0.012) TCGA-W3-AA1Q-06 3 31921316 31921316 G A OSBPL10 Silent p.F96F 0.20 TCGA-W3-AA1Q-06 3 32031732 32031732 C T ZNF860 Silent p.H387H 0.32 TCGA-W3-AA1Q-06 3 36879867 36879867 C T TRANK1 Missense_Mutation p.G1794E 0.28 deleterious(0.05) possibly_damaging(0.831) TCGA-W3-AA1Q-06 3 36898694 36898694 G A TRANK1 Missense_Mutation p.S796L 0.30 deleterious(0.01) possibly_damaging(0.722) TCGA-W3-AA1Q-06 3 38739124 38739124 G A SCN10A Missense_Mutation p.R1863W 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 3 3887625 3887625 C T LRRN1 Missense_Mutation p.R434C 0.30 deleterious(0.05) possibly_damaging(0.67) TCGA-W3-AA1Q-06 3 3888341 3888341 C T LRRN1 Silent p.T672T 0.35 TCGA-W3-AA1Q-06 3 38950632 38950632 G A SCN11A Silent p.F385F 0.27 TCGA-W3-AA1Q-06 3 40231832 40231832 G A MYRIP Missense_Mutation p.E515K 0.22 deleterious(0.02) probably_damaging(0.931) TCGA-W3-AA1Q-06 3 41266893 41266893 C T CTNNB1 Silent p.I188I 0.21 TCGA-W3-AA1Q-06 3 46479479 46479479 G A LTF Missense_Mutation p.P684S 0.34 tolerated(0.56) benign(0.002) TCGA-W3-AA1Q-06 3 46492049 46492049 G A LTF Missense_Mutation p.A273V 0.29 deleterious(0.03) possibly_damaging(0.691) TCGA-W3-AA1Q-06 3 47037005 47037005 C T NBEAL2 Missense_Mutation p.P594S 0.27 tolerated(0.83) benign(0.006) TCGA-W3-AA1Q-06 3 48601808 48601808 G A COL7A1 3'UTR 0.44 TCGA-W3-AA1Q-06 3 49688318 49688318 C T BSN Missense_Mutation p.P598S 0.31 unknown(0) TCGA-W3-AA1Q-06 3 49700762 49700762 G A BSN Missense_Mutation p.G3724D 0.36 unknown(0) TCGA-W3-AA1Q-06 3 49940198 49940198 C T MST1R Missense_Mutation p.R282Q 0.31 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1Q-06 3 50404019 50404019 A G CACNA2D2 Missense_Mutation p.V883A 0.24 tolerated(0.78) benign(0.006) TCGA-W3-AA1Q-06 3 50471744 50471744 C T CACNA2D2 Silent p.K135K 0.36 TCGA-W3-AA1Q-06 3 52403980 52403980 C T DNAH1 Missense_Mutation p.P2028L 0.34 benign(0.001) TCGA-W3-AA1Q-06 3 52437871 52437871 G C BAP1 Missense_Mutation p.S430R 0.29 tolerated_low_confidence(0.29) benign(0.107) TCGA-W3-AA1Q-06 3 52522286 52522286 C T NISCH Silent p.P926P 0.26 TCGA-W3-AA1Q-06 3 52538549 52538549 C T STAB1 Missense_Mutation p.S408F 0.34 tolerated(0.19) benign(0.015) TCGA-W3-AA1Q-06 3 54537561 54537561 G A CACNA2D3 Missense_Mutation p.D142N 0.32 tolerated(0.64) benign(0.231) TCGA-W3-AA1Q-06 3 54952466 54952466 C T LRTM1 3'UTR 0.30 TCGA-W3-AA1Q-06 3 54958896 54958896 G A LRTM1 Silent p.F118F 0.31 TCGA-W3-AA1Q-06 3 54961978 54961978 C T LRTM1 5'UTR 0.28 TCGA-W3-AA1Q-06 3 56628047 56628047 A G CCDC66 Silent p.L465L 0.36 TCGA-W3-AA1Q-06 3 58183599 58183599 C T DNASE1L3 Missense_Mutation p.G218E 0.24 tolerated(0.06) benign(0.151) TCGA-W3-AA1Q-06 3 63649646 63649646 C T SNTN Missense_Mutation p.L107F 0.44 tolerated(0.14) probably_damaging(0.971) TCGA-W3-AA1Q-06 3 71247418 71247418 C T FOXP1 Missense_Mutation p.G39R 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1Q-06 3 77637961 77637961 G A ROBO2 Missense_Mutation p.D870N 0.45 deleterious(0.05) possibly_damaging(0.539) TCGA-W3-AA1Q-06 3 97851987 97851987 A G OR5H1 Missense_Mutation p.Y149C 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-W3-AA1Q-06 4 100205607 100205607 G A ADH1A Silent p.L172L 0.41 TCGA-W3-AA1Q-06 4 100235037 100235037 C T ADH1B Missense_Mutation p.E257K 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1Q-06 4 102951242 102951242 G A BANK1 Missense_Mutation p.E574K 0.46 deleterious(0.02) benign(0.027) TCGA-W3-AA1Q-06 4 106320219 106320219 G A PPA2 Missense_Mutation p.A253V 0.26 deleterious(0) probably_damaging(0.955) TCGA-W3-AA1Q-06 4 111482634 111482634 G A ENPEP Missense_Mutation p.V932M 0.43 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1Q-06 4 113352097 113352097 C T ALPK1 Missense_Mutation p.S465L 0.37 deleterious(0) benign(0.081) TCGA-W3-AA1Q-06 4 113540312 113540312 G A C4orf21 Silent p.L296L 0.32 TCGA-W3-AA1Q-06 4 115769403 115769403 A G NDST4 Silent p.F636F 0.24 TCGA-W3-AA1Q-06 4 119947886 119947886 G A SYNPO2 Missense_Mutation p.R121Q 0.28 tolerated(0.4) benign(0.009) TCGA-W3-AA1Q-06 4 120240779 120240779 C T FABP2 Missense_Mutation p.G87E 0.35 deleterious(0) possibly_damaging(0.712) TCGA-W3-AA1Q-06 4 123230595 123230595 C T KIAA1109 Missense_Mutation p.H3410Y 0.38 benign(0.034) TCGA-W3-AA1Q-06 4 126373497 126373497 C T FAT4 Missense_Mutation p.P3776S 0.36 probably_damaging(0.948) TCGA-W3-AA1Q-06 4 126402700 126402700 C T FAT4 Missense_Mutation p.S4208L 0.46 benign(0.211) TCGA-W3-AA1Q-06 4 138442555 138442555 G A PCDH18 Silent p.F1012F 0.23 TCGA-W3-AA1Q-06 4 141320099 141320099 G A CLGN Missense_Mutation p.P264S 0.38 tolerated(0.06) benign(0.284) TCGA-W3-AA1Q-06 4 141327187 141327187 C T CLGN Missense_Mutation p.G110R 0.32 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1Q-06 4 141590949 141590949 G A TBC1D9 Nonsense_Mutation p.R426* 0.26 TCGA-W3-AA1Q-06 4 144920579 144920579 G A GYPB Missense_Mutation p.R54C 0.37 tolerated(0.06) benign(0.385) TCGA-W3-AA1Q-06 4 154709698 154709698 G A SFRP2 Missense_Mutation p.S97L 0.33 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1Q-06 4 155241609 155241609 C T DCHS2 Missense_Mutation p.E1193K 0.25 tolerated(0.07) probably_damaging(0.943) TCGA-W3-AA1Q-06 4 166388971 166388971 G A CPE Silent p.L212L 0.34 TCGA-W3-AA1Q-06 4 166794993 166794993 C T TLL1 5'UTR 0.26 TCGA-W3-AA1Q-06 4 166916244 166916244 G A TLL1 Missense_Mutation p.M182I 0.28 deleterious(0.02) possibly_damaging(0.854) TCGA-W3-AA1Q-06 4 169013836 169013836 A G ANXA10 5'UTR 0.21 TCGA-W3-AA1Q-06 4 169108694 169108694 C T ANXA10 3'UTR 0.36 TCGA-W3-AA1Q-06 4 169351699 169351699 G A DDX60L Missense_Mutation p.T536M 0.18 deleterious(0) possibly_damaging(0.608) TCGA-W3-AA1Q-06 4 189068073 189068073 C T TRIML1 Silent p.P318P 0.41 TCGA-W3-AA1Q-06 4 20526788 20526788 C T SLIT2 Silent p.F485F 0.33 TCGA-W3-AA1Q-06 4 2944008 2944009 CT - NOP14 Frame_Shift_Del p.E654Gfs*17 0.35 TCGA-W3-AA1Q-06 4 39077748 39077748 C T KLHL5 Missense_Mutation p.R229C 0.35 tolerated(0.06) probably_damaging(0.95) TCGA-W3-AA1Q-06 4 39408863 39408863 G A KLB Silent p.G98G 0.39 TCGA-W3-AA1Q-06 4 40121928 40121928 A T N4BP2 Missense_Mutation p.N733Y 0.25 deleterious(0.03) possibly_damaging(0.838) TCGA-W3-AA1Q-06 4 40356393 40356393 C T CHRNA9 Silent p.A432A 0.31 TCGA-W3-AA1Q-06 4 41648207 41648207 G A LIMCH1 Missense_Mutation p.R389K 0.43 tolerated(0.07) probably_damaging(0.989) TCGA-W3-AA1Q-06 4 41699231 41699231 C T LIMCH1 3'UTR 0.25 TCGA-W3-AA1Q-06 4 42895383 42895383 G A GRXCR1 Missense_Mutation p.E34K 0.25 tolerated(0.48) benign(0) TCGA-W3-AA1Q-06 4 42895554 42895554 G A GRXCR1 Missense_Mutation p.G91S 0.35 tolerated(0.57) benign(0.021) TCGA-W3-AA1Q-06 4 52945960 52945960 C T SPATA18 Silent p.V410V 0.25 TCGA-W3-AA1Q-06 4 55945976 55945976 C T KDR 3'UTR 0.50 TCGA-W3-AA1Q-06 4 5664859 5664859 C T EVC2 Missense_Mutation p.G374R 0.28 tolerated(0.19) possibly_damaging(0.452) TCGA-W3-AA1Q-06 4 69342097 69342097 C T TMPRSS11E Silent p.R216R 0.50 TCGA-W3-AA1Q-06 4 70160436 70160436 G C UGT2B28 Missense_Mutation p.C500S 0.30 deleterious(0.01) benign(0.159) TCGA-W3-AA1Q-06 4 70360893 70360893 C T UGT2B4 Missense_Mutation p.M229I 0.35 tolerated(0.4) benign(0.001) TCGA-W3-AA1Q-06 4 71200988 71200988 G A CABS1 Missense_Mutation p.E78K 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-W3-AA1Q-06 4 71510319 71510319 G A ENAM Missense_Mutation p.G1059D 0.35 tolerated(0.08) benign(0.137) TCGA-W3-AA1Q-06 4 74005806 74005806 G A ANKRD17 Missense_Mutation p.L843F 0.25 possibly_damaging(0.796) TCGA-W3-AA1Q-06 4 74005807 74005807 T A ANKRD17 Missense_Mutation p.Q842H 0.25 benign(0.395) TCGA-W3-AA1Q-06 4 74302033 74302033 C T AFP Silent p.S18S 0.42 TCGA-W3-AA1Q-06 4 75250478 75250478 G A EREG Missense_Mutation p.E155K 0.42 tolerated(0.06) possibly_damaging(0.533) TCGA-W3-AA1Q-06 4 77288468 77288468 C T CCDC158 Silent p.R603R 0.20 TCGA-W3-AA1Q-06 4 77661935 77661935 G A SHROOM3 Missense_Mutation p.G870E 0.28 tolerated(0.34) benign(0.003) TCGA-W3-AA1Q-06 4 79371384 79371384 G A FRAS1 Missense_Mutation p.M2118I 0.06 benign(0.001) TCGA-W3-AA1Q-06 4 81207652 81207652 C T FGF5 Silent p.I211I 0.30 TCGA-W3-AA1Q-06 4 84376446 84376446 T C HELQ Intron 0.38 TCGA-W3-AA1Q-06 4 86921733 86921733 G A ARHGAP24 Missense_Mutation p.R702Q 0.37 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1Q-06 4 89183832 89183832 G A PPM1K Missense_Mutation p.P345L 0.26 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1Q-06 4 941918 941918 C T TMEM175 Silent p.T56T 0.20 TCGA-W3-AA1Q-06 4 94693516 94693516 C T GRID2 Missense_Mutation p.P964L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-W3-AA1Q-06 5 118970115 118970115 G A FAM170A Missense_Mutation p.M224I 0.30 tolerated(0.18) benign(0.008) TCGA-W3-AA1Q-06 5 121785622 121785622 T C SNCAIP Missense_Mutation p.S559P 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1Q-06 5 122364510 122364510 C T PPIC Missense_Mutation p.M95I 0.31 deleterious(0) benign(0.313) TCGA-W3-AA1Q-06 5 126993319 126993319 C T CTXN3 Silent p.L36L 0.40 TCGA-W3-AA1Q-06 5 132160967 132160967 G A SHROOM1 Missense_Mutation p.S289F 0.25 tolerated(0.27) possibly_damaging(0.635) TCGA-W3-AA1Q-06 5 132209748 132209748 G A LEAP2 Missense_Mutation p.R55Q 0.28 deleterious(0.03) possibly_damaging(0.857) TCGA-W3-AA1Q-06 5 133316565 133316565 G A VDAC1 Missense_Mutation p.P136S 0.25 deleterious(0.01) benign(0.204) TCGA-W3-AA1Q-06 5 133643988 133643988 G A CDKL3 Missense_Mutation p.T402I 0.29 tolerated(0.72) benign(0.001) TCGA-W3-AA1Q-06 5 13692194 13692194 G A DNAH5 Nonsense_Mutation p.R4592* 0.40 TCGA-W3-AA1Q-06 5 13762978 13762978 C T DNAH5 Silent p.V3378V 0.29 TCGA-W3-AA1Q-06 5 13770933 13770933 G A DNAH5 Missense_Mutation p.S3177L 0.34 possibly_damaging(0.637) TCGA-W3-AA1Q-06 5 13917306 13917306 C T DNAH5 Silent p.V345V 0.39 TCGA-W3-AA1Q-06 5 140176667 140176667 G A PCDHA2 Silent p.A706A 0.31 TCGA-W3-AA1Q-06 5 140481409 140481409 C T PCDHB3 Silent p.F392F 0.26 TCGA-W3-AA1Q-06 5 140554417 140554417 C T PCDHB7 Silent p.S667S 0.20 TCGA-W3-AA1Q-06 5 140559640 140559640 G A PCDHB8 Silent p.P675P 0.41 TCGA-W3-AA1Q-06 5 140724476 140724476 C T PCDHGA3 Silent p.F292F 0.32 TCGA-W3-AA1Q-06 5 140730217 140730217 C T PCDHGB1 Silent p.F130F 0.40 TCGA-W3-AA1Q-06 5 140908428 140908428 G A DIAPH1 Silent p.I953I 0.29 TCGA-W3-AA1Q-06 5 141041752 141041752 G A ARAP3 Silent p.F957F 0.40 TCGA-W3-AA1Q-06 5 143586640 143586640 C T KCTD16 Silent p.L121L 0.16 TCGA-W3-AA1Q-06 5 143853695 143853695 G A KCTD16 3'UTR 0.35 TCGA-W3-AA1Q-06 5 145176086 145176086 C T PRELID2 Silent p.R143R 0.31 TCGA-W3-AA1Q-06 5 147889133 147889133 C T HTR4 Missense_Mutation p.R321H 0.22 deleterious(0.05) benign(0.035) TCGA-W3-AA1Q-06 5 149500857 149500857 C T PDGFRB Silent p.L791L 0.25 TCGA-W3-AA1Q-06 5 151784706 151784706 G A NMUR2 5'UTR 0.37 TCGA-W3-AA1Q-06 5 156479463 156479463 C T HAVCR1 Silent p.T194T 0.26 TCGA-W3-AA1Q-06 5 156810281 156810281 C G CYFIP2 Missense_Mutation p.R1015G 0.39 deleterious(0.03) benign(0.258) TCGA-W3-AA1Q-06 5 158523402 158523402 C T EBF1 Missense_Mutation p.E102K 0.28 tolerated(0.1) possibly_damaging(0.464) TCGA-W3-AA1Q-06 5 160114811 160114811 G A ATP10B Missense_Mutation p.H91Y 0.33 deleterious(0.02) benign(0.38) TCGA-W3-AA1Q-06 5 16067875 16067875 A G MARCH11 Missense_Mutation p.V305A 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-W3-AA1Q-06 5 167420150 167420150 G A TENM2 Silent p.A383A 0.29 TCGA-W3-AA1Q-06 5 170149775 170149775 G A KCNIP1 Nonsense_Mutation p.W140* 0.36 TCGA-W3-AA1Q-06 5 170149776 170149776 G A KCNIP1 Nonsense_Mutation p.W140* 0.37 TCGA-W3-AA1Q-06 5 176023763 176023763 G A GPRIN1 3'UTR 0.53 TCGA-W3-AA1Q-06 5 176396174 176396174 G A UIMC1 Silent p.V194V 0.34 TCGA-W3-AA1Q-06 5 176966031 176966031 G A FAM193B Missense_Mutation p.P110S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1Q-06 5 178413537 178413537 G A GRM6 Missense_Mutation p.P573L 0.27 tolerated(0.08) benign(0.013) TCGA-W3-AA1Q-06 5 180338538 180338538 G A BTNL8 Silent p.E199E 0.25 TCGA-W3-AA1Q-06 5 180475059 180475059 A G BTNL9 Missense_Mutation p.N81S 0.42 tolerated(0.21) benign(0.111) TCGA-W3-AA1Q-06 5 26903797 26903797 G A CDH9 Silent p.F316F 0.30 TCGA-W3-AA1Q-06 5 31317599 31317599 G A CDH6 Missense_Mutation p.D544N 0.31 tolerated(0.11) possibly_damaging(0.723) TCGA-W3-AA1Q-06 5 31323136 31323136 C T CDH6 Silent p.F698F 0.32 TCGA-W3-AA1Q-06 5 35065777 35065777 G A PRLR Missense_Mutation p.S428F 0.30 tolerated(0.73) possibly_damaging(0.838) TCGA-W3-AA1Q-06 5 35089691 35089691 A G PRLR Missense_Mutation p.F11S 0.37 deleterious(0.04) benign(0.033) TCGA-W3-AA1Q-06 5 35705828 35705828 C T SPEF2 Silent p.I861I 0.36 TCGA-W3-AA1Q-06 5 35874636 35874636 G A IL7R Nonsense_Mutation p.W264* 0.20 TCGA-W3-AA1Q-06 5 38463998 38463998 C T EGFLAM Silent p.I988I 0.30 TCGA-W3-AA1Q-06 5 38876401 38876401 C T OSMR Missense_Mutation p.P58S 0.33 tolerated(0.93) benign(0.012) TCGA-W3-AA1Q-06 5 39202546 39202546 A G FYB Silent p.L183L 0.41 TCGA-W3-AA1Q-06 5 41012687 41012687 G A MROH2B Nonsense_Mutation p.Q1045* 0.30 TCGA-W3-AA1Q-06 5 42700094 42700094 A T GHR Missense_Mutation p.K203I 0.35 tolerated(0.05) benign(0.179) TCGA-W3-AA1Q-06 5 43246030 43246030 G A NIM1K Silent p.L51L 0.32 TCGA-W3-AA1Q-06 5 44388617 44388617 G A FGF10 Silent p.S56S 0.31 TCGA-W3-AA1Q-06 5 45267197 45267197 G A HCN1 Nonsense_Mutation p.R593* 0.34 TCGA-W3-AA1Q-06 5 54618224 54618224 C T SKIV2L2 Silent p.F68F 0.37 TCGA-W3-AA1Q-06 5 55237104 55237104 G A IL6ST Missense_Mutation p.H855Y 0.39 tolerated(0.13) benign(0.089) TCGA-W3-AA1Q-06 5 65105527 65105527 A C NLN Silent p.T571T 0.36 TCGA-W3-AA1Q-06 5 66459247 66459247 C T MAST4 Missense_Mutation p.P1414S 0.34 possibly_damaging(0.835) TCGA-W3-AA1Q-06 5 66478937 66478937 G A CD180 Silent p.P578P 0.34 TCGA-W3-AA1Q-06 5 70671802 70671802 A C RP11-136K7.2 Intron 0.45 TCGA-W3-AA1Q-06 5 72470044 72470044 C T TMEM174 3'UTR 0.41 TCGA-W3-AA1Q-06 5 78602230 78602230 C T JMY Silent p.I638I 0.38 TCGA-W3-AA1Q-06 5 79034285 79034285 G A CMYA5 Missense_Mutation p.G3233R 0.21 possibly_damaging(0.78) TCGA-W3-AA1Q-06 6 106968516 106968516 G A AIM1 Missense_Mutation p.E737K 0.27 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 6 11005692 11005692 C T ELOVL2 Missense_Mutation p.M56I 0.28 deleterious(0.01) benign(0.238) TCGA-W3-AA1Q-06 6 110763913 110763913 C T SLC22A16 Silent p.R239R 0.22 TCGA-W3-AA1Q-06 6 111196267 111196267 T G AMD1 5'UTR 0.44 TCGA-W3-AA1Q-06 6 116442416 116442416 C T COL10A1 Missense_Mutation p.G288E 0.25 deleterious(0) unknown(0) TCGA-W3-AA1Q-06 6 116747768 116747768 C T DSE Missense_Mutation p.P150S 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1Q-06 6 117113592 117113592 G A GPRC6A Missense_Mutation p.P832S 0.28 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 6 117663616 117663616 G A ROS1 Missense_Mutation p.P1539L 0.12 tolerated(0.66) benign(0.002) TCGA-W3-AA1Q-06 6 117709176 117709176 A T ROS1 Missense_Mutation p.I594N 0.20 deleterious_low_confidence(0.01) benign(0.047) TCGA-W3-AA1Q-06 6 119501026 119501026 G A MAN1A1 Silent p.I640I 0.12 TCGA-W3-AA1Q-06 6 12125275 12125275 C T HIVEP1 Silent p.S1749S 0.24 TCGA-W3-AA1Q-06 6 123319301 123319301 G A CLVS2 Missense_Mutation p.D127N 0.25 tolerated(0.11) benign(0.393) TCGA-W3-AA1Q-06 6 123377007 123377007 C T CLVS2 Silent p.I244I 0.34 TCGA-W3-AA1Q-06 6 125269232 125269232 C T RP11-510H23.1 RNA 0.22 TCGA-W3-AA1Q-06 6 128134222 128134222 C T THEMIS Missense_Mutation p.D522N 0.17 tolerated(0.44) benign(0.019) TCGA-W3-AA1Q-06 6 129621950 129621950 C T LAMA2 Missense_Mutation p.T1036I 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 6 129802580 129802580 G A LAMA2 Missense_Mutation p.G2582E 0.25 tolerated(0.1) probably_damaging(0.948) TCGA-W3-AA1Q-06 6 130530648 130530648 C T SAMD3 Silent p.L125L 0.27 TCGA-W3-AA1Q-06 6 130761673 130761673 G A TMEM200A Missense_Mutation p.E36K 0.16 tolerated(0.34) benign(0.082) TCGA-W3-AA1Q-06 6 132649631 132649631 C T MOXD1 Missense_Mutation p.E256K 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-W3-AA1Q-06 6 133111380 133111380 A T SLC18B1 Missense_Mutation p.I72N 0.26 deleterious(0) possibly_damaging(0.493) TCGA-W3-AA1Q-06 6 136597554 136597554 C G BCLAF1 Missense_Mutation p.R370T 0.14 tolerated(0.08) benign(0.402) TCGA-W3-AA1Q-06 6 143090763 143090763 A G HIVEP2 Missense_Mutation p.Y1705H 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 6 149901783 149901783 C T GINM1 Missense_Mutation p.T214I 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1Q-06 6 150001288 150001288 G A LATS1 Silent p.F772F 0.38 TCGA-W3-AA1Q-06 6 154735445 154735445 G A CNKSR3 Missense_Mutation p.P353L 0.29 tolerated(0.14) probably_damaging(1) TCGA-W3-AA1Q-06 6 155450974 155450974 C T TIAM2 Missense_Mutation p.S206L 0.28 deleterious_low_confidence(0.01) benign(0.102) TCGA-W3-AA1Q-06 6 158923440 158923440 C T TULP4 Silent p.T915T 0.28 TCGA-W3-AA1Q-06 6 160679894 160679894 G A SLC22A2 5'UTR 0.36 TCGA-W3-AA1Q-06 6 161507683 161507683 C T MAP3K4 Missense_Mutation p.S847L 0.29 tolerated(0.4) benign(0.01) TCGA-W3-AA1Q-06 6 165715492 165715492 C T C6orf118 Missense_Mutation p.E107K 0.30 deleterious(0.01) benign(0.275) TCGA-W3-AA1Q-06 6 167709679 167709679 C T UNC93A Silent p.L143L 0.22 TCGA-W3-AA1Q-06 6 168351938 168351938 G A MLLT4 Missense_Mutation p.A1295T 0.21 tolerated_low_confidence(0.4) benign(0.003) TCGA-W3-AA1Q-06 6 169067156 169067156 G A SMOC2 3'UTR 0.26 TCGA-W3-AA1Q-06 6 18256632 18256632 C T DEK Missense_Mutation p.G138R 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-W3-AA1Q-06 6 24564543 24564543 C T KIAA0319 Missense_Mutation p.S773N 0.46 tolerated(0.26) benign(0.021) TCGA-W3-AA1Q-06 6 29323035 29323035 G A OR5V1 Missense_Mutation p.S313F 0.21 tolerated_low_confidence(0.14) benign(0.001) TCGA-W3-AA1Q-06 6 30682953 30682953 G A MDC1 Intron 0.35 TCGA-W3-AA1Q-06 6 31598409 31598409 T A PRRC2A Missense_Mutation p.S766T 0.24 benign(0.153) TCGA-W3-AA1Q-06 6 31657475 31657475 G A ABHD16A Missense_Mutation p.P322S 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 6 31857024 31857024 C T EHMT2 Silent p.P365P 0.24 TCGA-W3-AA1Q-06 6 32317571 32317571 C T C6orf10 Missense_Mutation p.E99K 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.486) TCGA-W3-AA1Q-06 6 32784740 32784740 G A HLA-DOB 5'UTR 0.23 TCGA-W3-AA1Q-06 6 33245405 33245405 C T B3GALT4 Missense_Mutation p.P70L 0.27 deleterious(0) possibly_damaging(0.632) TCGA-W3-AA1Q-06 6 35258420 35258420 G A ZNF76 Silent p.V184V 0.28 TCGA-W3-AA1Q-06 6 36262162 36262162 C T PNPLA1 Missense_Mutation p.P234S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 6 36275522 36275522 G A PNPLA1 3'UTR 0.37 TCGA-W3-AA1Q-06 6 36296421 36296421 G A C6orf222 Silent p.P227P 0.16 TCGA-W3-AA1Q-06 6 36296422 36296422 G A C6orf222 Missense_Mutation p.P227L 0.17 deleterious(0.02) probably_damaging(0.958) TCGA-W3-AA1Q-06 6 37623535 37623535 C T MDGA1 Missense_Mutation p.D174N 0.16 tolerated(0.15) benign(0.025) TCGA-W3-AA1Q-06 6 38565751 38565751 G A BTBD9 Silent p.F40F 0.19 TCGA-W3-AA1Q-06 6 38830138 38830138 A G DNAH8 Missense_Mutation p.T1855A 0.22 probably_damaging(1) TCGA-W3-AA1Q-06 6 39328261 39328261 G A KIF6 Silent p.I664I 0.57 TCGA-W3-AA1Q-06 6 40400179 40400179 G A LRFN2 Missense_Mutation p.A225V 0.22 tolerated(0.57) benign(0.002) TCGA-W3-AA1Q-06 6 41250239 41250239 C T TREM1 Missense_Mutation p.M100I 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-W3-AA1Q-06 6 41254406 41254406 C T TREM1 5'UTR 0.47 TCGA-W3-AA1Q-06 6 41254407 41254407 C T TREM1 5'UTR 0.48 TCGA-W3-AA1Q-06 6 42200517 42200517 G A TRERF1 Silent p.T1060T 0.32 TCGA-W3-AA1Q-06 6 42643877 42643877 C T UBR2 Silent p.F1445F 0.19 TCGA-W3-AA1Q-06 6 43096852 43096852 C T PTK7 Nonsense_Mutation p.Q81* 0.24 TCGA-W3-AA1Q-06 6 43113113 43113113 C T PTK7 Silent p.L869L 0.20 TCGA-W3-AA1Q-06 6 46849834 46849834 C T GPR116 Missense_Mutation p.G208D 0.29 deleterious(0) probably_damaging(0.978) TCGA-W3-AA1Q-06 6 49701541 49701541 G A CRISP3 Missense_Mutation p.L123F 0.19 deleterious(0) probably_damaging(0.939) TCGA-W3-AA1Q-06 6 49754854 49754854 C T PGK2 Missense_Mutation p.G16E 0.26 deleterious(0.02) benign(0.177) TCGA-W3-AA1Q-06 6 49825115 49825115 C T CRISP1 Intron 0.29 TCGA-W3-AA1Q-06 6 52131437 52131437 G A MCM3 Silent p.F755F 0.25 TCGA-W3-AA1Q-06 6 52661070 52661070 T A GSTA1 Missense_Mutation p.D61V 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 6 55739504 55739504 C T BMP5 Missense_Mutation p.E54K 0.24 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 6 62390921 62390921 G A KHDRBS2 Missense_Mutation p.P333S 0.15 tolerated(0.34) benign(0.026) TCGA-W3-AA1Q-06 6 69348848 69348848 C T BAI3 Missense_Mutation p.S94F 0.28 deleterious(0.04) probably_damaging(0.974) TCGA-W3-AA1Q-06 6 75799994 75799994 G A COL12A1 Nonsense_Mutation p.Q2925* 0.21 TCGA-W3-AA1Q-06 6 75829083 75829083 C T COL12A1 Missense_Mutation p.G2398E 0.22 probably_damaging(1) TCGA-W3-AA1Q-06 6 76712689 76712689 G A IMPG1 Missense_Mutation p.P413S 0.31 tolerated(0.14) benign(0.004) TCGA-W3-AA1Q-06 6 76744384 76744384 C T IMPG1 Missense_Mutation p.G141E 0.23 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 6 79672937 79672937 G A PHIP Missense_Mutation p.P1138S 0.15 tolerated(0.31) probably_damaging(0.996) TCGA-W3-AA1Q-06 6 84311139 84311139 G A SNAP91 Missense_Mutation p.S392F 0.20 deleterious(0.03) unknown(0) TCGA-W3-AA1Q-06 6 88854501 88854501 G A CNR1 Silent p.L165L 0.21 TCGA-W3-AA1Q-06 6 89650829 89650829 G A RNGTT Silent p.F45F 0.19 TCGA-W3-AA1Q-06 6 90406081 90406081 G A MDN1 Silent p.F3127F 0.21 TCGA-W3-AA1Q-06 6 93953158 93953158 C T EPHA7 Missense_Mutation p.G995S 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-W3-AA1Q-06 6 97616088 97616088 G A MMS22L Silent p.I956I 0.19 TCGA-W3-AA1Q-06 7 100799937 100799937 C T AP1S1 Silent p.A22A 0.42 TCGA-W3-AA1Q-06 7 103162480 103162480 G A RELN Missense_Mutation p.H2553Y 0.43 tolerated(0.24) probably_damaging(0.992) TCGA-W3-AA1Q-06 7 103838230 103838230 C A ORC5 Missense_Mutation p.E128D 0.25 deleterious(0.01) benign(0.257) TCGA-W3-AA1Q-06 7 107262441 107262441 C T BCAP29 3'UTR 0.27 TCGA-W3-AA1Q-06 7 107399220 107399220 C T CBLL1 Missense_Mutation p.P358L 0.36 tolerated(0.08) probably_damaging(0.994) TCGA-W3-AA1Q-06 7 107592472 107592472 G A LAMB1 Silent p.F1092F 0.25 TCGA-W3-AA1Q-06 7 11078452 11078452 A G PHF14 Missense_Mutation p.I682M 0.19 tolerated(0.4) benign(0.004) TCGA-W3-AA1Q-06 7 119914791 119914791 G A KCND2 Silent p.R35R 0.38 TCGA-W3-AA1Q-06 7 128807262 128807262 G T TSPAN33 Missense_Mutation p.G204V 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 7 129663446 129663446 G A ZC3HC1 Nonsense_Mutation p.R380* 0.63 TCGA-W3-AA1Q-06 7 129663447 129663447 G T ZC3HC1 Silent p.T379T 0.62 TCGA-W3-AA1Q-06 7 133749177 133749177 G A EXOC4 Missense_Mutation p.E941K 0.63 tolerated(0.25) benign(0.008) TCGA-W3-AA1Q-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.75 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1Q-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.75 deleterious(0) possibly_damaging(0.838) TCGA-W3-AA1Q-06 7 141643732 141643732 G A CLEC5A Missense_Mutation p.P58S 0.81 tolerated(0.88) benign(0.021) TCGA-W3-AA1Q-06 7 141759715 141759715 G A MGAM Silent p.E1336E 0.68 TCGA-W3-AA1Q-06 7 142626544 142626544 G A TRPV5 Missense_Mutation p.P156S 0.72 tolerated(0.55) benign(0.011) TCGA-W3-AA1Q-06 7 143701865 143701865 G A OR6B1 Missense_Mutation p.R259Q 0.76 deleterious(0.03) probably_damaging(0.98) TCGA-W3-AA1Q-06 7 1484397 1484397 G A MICALL2 Missense_Mutation p.P437S 0.29 tolerated(0.06) benign(0.05) TCGA-W3-AA1Q-06 7 150416138 150416138 G A GIMAP1 Translation_Start_Site p.M1? 0.67 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1Q-06 7 150696075 150696075 C T NOS3 Silent p.F286F 0.70 TCGA-W3-AA1Q-06 7 151874443 151874443 G T KMT2C Missense_Mutation p.L2699M 0.57 probably_damaging(0.938) TCGA-W3-AA1Q-06 7 151927078 151927078 C T KMT2C Missense_Mutation p.G969E 0.05 probably_damaging(1) TCGA-W3-AA1Q-06 7 151962139 151962139 C T KMT2C Missense_Mutation p.V390M 0.04 probably_damaging(1) TCGA-W3-AA1Q-06 7 15433785 15433785 G A AGMO Missense_Mutation p.P210L 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1Q-06 7 155504002 155504002 C T RBM33 Missense_Mutation p.H352Y 0.54 deleterious(0) benign(0.291) TCGA-W3-AA1Q-06 7 21698617 21698617 G A DNAH11 Missense_Mutation p.E1771K 0.50 benign(0.115) TCGA-W3-AA1Q-06 7 2404116 2404116 G A EIF3B Missense_Mutation p.R370K 0.39 tolerated(0.22) benign(0.007) TCGA-W3-AA1Q-06 7 24756985 24756985 C G DFNA5 Silent p.A195A 0.43 TCGA-W3-AA1Q-06 7 2978397 2978397 C T CARD11 Silent p.E311E 0.29 TCGA-W3-AA1Q-06 7 29983621 29983621 C T SCRN1 Silent p.G192G 0.39 TCGA-W3-AA1Q-06 7 31016071 31016071 G A GHRHR Silent p.L334L 0.24 TCGA-W3-AA1Q-06 7 41729272 41729272 G A INHBA Silent p.I419I 0.34 TCGA-W3-AA1Q-06 7 44741139 44741139 C T OGDH Intron 0.41 TCGA-W3-AA1Q-06 7 44797571 44797571 C T ZMIZ2 Missense_Mutation p.P226L 0.26 deleterious(0) possibly_damaging(0.585) TCGA-W3-AA1Q-06 7 50358686 50358686 C T IKZF1 Missense_Mutation p.S10F 0.30 tolerated(0.09) possibly_damaging(0.459) TCGA-W3-AA1Q-06 7 50607688 50607688 G A DDC Silent p.F80F 0.34 TCGA-W3-AA1Q-06 7 53103921 53103921 C T POM121L12 Missense_Mutation p.P186L 0.37 deleterious(0.04) benign(0.003) TCGA-W3-AA1Q-06 7 57193741 57193741 C T ZNF479 Missense_Mutation p.M82I 0.17 tolerated(0.1) benign(0.185) TCGA-W3-AA1Q-06 7 6730678 6730678 G A ZNF12 Missense_Mutation p.P632L 0.23 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1Q-06 7 70236541 70236541 C T AUTS2 Missense_Mutation p.H581Y 0.31 tolerated(0.11) probably_damaging(0.925) TCGA-W3-AA1Q-06 7 72657621 72657621 C T GTF2IRD2P1 RNA 0.25 TCGA-W3-AA1Q-06 7 73790474 73790474 C T CLIP2 Silent p.L581L 0.39 TCGA-W3-AA1Q-06 7 75684224 75684224 C T MDH2 Missense_Mutation p.P48L 0.36 deleterious(0.02) benign(0.109) TCGA-W3-AA1Q-06 7 77824285 77824285 C A MAGI2 Missense_Mutation p.R725S 0.48 tolerated(0.09) possibly_damaging(0.504) TCGA-W3-AA1Q-06 7 79082472 79082472 C T MAGI2 Silent p.E55E 0.35 TCGA-W3-AA1Q-06 7 8110708 8110708 C T GLCCI1 Missense_Mutation p.S375F 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1Q-06 7 81381466 81381466 C T HGF Missense_Mutation p.E199K 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-W3-AA1Q-06 7 82582374 82582374 G A PCLO Missense_Mutation p.P2632L 0.30 unknown(0) TCGA-W3-AA1Q-06 7 82585743 82585743 G A PCLO Missense_Mutation p.P1509L 0.19 unknown(0) TCGA-W3-AA1Q-06 7 84651832 84651832 G A SEMA3D Missense_Mutation p.S430F 0.34 deleterious(0) possibly_damaging(0.789) TCGA-W3-AA1Q-06 7 86394464 86394464 G A GRM3 Translation_Start_Site p.M1? 0.29 tolerated_low_confidence(0.38) benign(0) TCGA-W3-AA1Q-06 7 88964021 88964021 G A ZNF804B Missense_Mutation p.M575I 0.24 tolerated(0.45) benign(0.007) TCGA-W3-AA1Q-06 7 91843930 91843930 G A KRIT1 Silent p.F575F 0.32 TCGA-W3-AA1Q-06 7 95657570 95657570 G A DYNC1I1 Nonsense_Mutation p.W368* 0.31 TCGA-W3-AA1Q-06 7 97616375 97616375 C T OCM2 Silent p.G96G 0.41 TCGA-W3-AA1Q-06 7 98256641 98256641 C T NPTX2 Silent p.I351I 0.35 TCGA-W3-AA1Q-06 8 100821730 100821730 T C VPS13B Missense_Mutation p.V2715A 0.28 deleterious(0.03) benign(0.418) TCGA-W3-AA1Q-06 8 110099791 110099791 G A TRHR Missense_Mutation p.R17Q 0.30 tolerated(0.52) benign(0) TCGA-W3-AA1Q-06 8 110476479 110476479 G A PKHD1L1 Missense_Mutation p.R2473Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 8 110489587 110489587 A T PKHD1L1 Silent p.S3017S 0.21 TCGA-W3-AA1Q-06 8 114389044 114389044 G C CSMD3 Intron 0.23 TCGA-W3-AA1Q-06 8 11615840 11615840 C T GATA4 Silent p.S395S 0.39 TCGA-W3-AA1Q-06 8 118185004 118185004 G A SLC30A8 3'UTR 0.47 TCGA-W3-AA1Q-06 8 120114589 120114589 G A COLEC10 Missense_Mutation p.D99N 0.33 tolerated(0.09) possibly_damaging(0.737) TCGA-W3-AA1Q-06 8 121293177 121293177 A G COL14A1 Missense_Mutation p.M1235V 0.17 tolerated(0.13) benign(0.001) TCGA-W3-AA1Q-06 8 121293213 121293213 G A COL14A1 Missense_Mutation p.E1247K 0.11 tolerated(0.73) benign(0.066) TCGA-W3-AA1Q-06 8 121426230 121426230 G A MRPL13 Missense_Mutation p.P172L 0.24 tolerated(0.7) benign(0.171) TCGA-W3-AA1Q-06 8 124822543 124822543 C T FAM91A1 Silent p.S761S 0.24 TCGA-W3-AA1Q-06 8 125022943 125022943 G A FER1L6 Missense_Mutation p.A604T 0.30 deleterious(0.02) possibly_damaging(0.493) TCGA-W3-AA1Q-06 8 133141625 133141625 C T KCNQ3 Missense_Mutation p.E835K 0.31 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 8 133196614 133196614 C T KCNQ3 Missense_Mutation p.E160K 0.38 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1Q-06 8 139164997 139164997 G A FAM135B Missense_Mutation p.A574V 0.38 tolerated(0.18) benign(0.014) TCGA-W3-AA1Q-06 8 139255192 139255192 G A FAM135B Missense_Mutation p.S221F 0.28 tolerated(0.1) benign(0.021) TCGA-W3-AA1Q-06 8 143867012 143867012 C T LY6D Silent p.T48T 0.18 TCGA-W3-AA1Q-06 8 144130699 144130699 G A C8orf31 3'UTR 0.36 TCGA-W3-AA1Q-06 8 145096214 145096214 C T SPATC1 Missense_Mutation p.P463L 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1Q-06 8 23709824 23709824 G A STC1 Silent p.T64T 0.34 TCGA-W3-AA1Q-06 8 24187543 24187543 G A ADAM28 Missense_Mutation p.E340K 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 8 24251645 24251645 G A ADAMDEC1 Silent p.T116T 0.31 TCGA-W3-AA1Q-06 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.25 deleterious(0.01) benign(0.01) TCGA-W3-AA1Q-06 8 26614265 26614265 G A ADRA1A Intron 0.42 TCGA-W3-AA1Q-06 8 27321327 27321327 G A CHRNA2 Silent p.I211I 0.34 TCGA-W3-AA1Q-06 8 27462484 27462484 G A CLU Silent p.F262F 0.29 TCGA-W3-AA1Q-06 8 30699771 30699771 G C TEX15 Missense_Mutation p.L2255V 0.32 deleterious(0.02) possibly_damaging(0.861) TCGA-W3-AA1Q-06 8 30706418 30706418 G A TEX15 Missense_Mutation p.S39L 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1Q-06 8 33449675 33449675 C T DUSP26 Silent p.L164L 0.43 TCGA-W3-AA1Q-06 8 38287214 38287214 G A FGFR1 Missense_Mutation p.S148F 0.44 tolerated(0.11) possibly_damaging(0.812) TCGA-W3-AA1Q-06 8 41467242 41467278 AAGGCTCTGGACAACACTCCAGAGTTCGAGCTCTCTG - AGPAT6 Frame_Shift_Del p.K102Tfs*18 0.26 TCGA-W3-AA1Q-06 8 4277512 4277512 G A CSMD1 Silent p.F126F 0.38 TCGA-W3-AA1Q-06 8 52387595 52387595 C T PXDNL Missense_Mutation p.E211K 0.29 tolerated(0.09) benign(0.217) TCGA-W3-AA1Q-06 8 55537752 55537752 G A RP1 Missense_Mutation p.G437E 0.30 tolerated(1) benign(0.002) TCGA-W3-AA1Q-06 8 55539065 55539065 G A RP1 Missense_Mutation p.D875N 0.30 tolerated(0.3) benign(0.004) TCGA-W3-AA1Q-06 8 57079302 57079302 G A PLAG1 Missense_Mutation p.P335S 0.31 tolerated(0.58) probably_damaging(0.968) TCGA-W3-AA1Q-06 8 63936657 63936657 C T GGH Silent p.K196K 0.26 TCGA-W3-AA1Q-06 8 64098835 64098835 C T YTHDF3 Missense_Mutation p.T88I 0.23 deleterious(0.04) probably_damaging(0.982) TCGA-W3-AA1Q-06 8 69358701 69358701 G A C8orf34 Intron 0.44 TCGA-W3-AA1Q-06 8 70498601 70498601 G A SULF1 Missense_Mutation p.G141E 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 8 70515466 70515466 G A SULF1 Silent p.T367T 0.37 TCGA-W3-AA1Q-06 8 73849446 73849446 C T KCNB2 Missense_Mutation p.S619L 0.33 tolerated_low_confidence(0.51) benign(0.036) TCGA-W3-AA1Q-06 8 75171739 75171739 C T JPH1 Splice_Site p.X380_splice 0.48 TCGA-W3-AA1Q-06 8 87162350 87162350 G A ATP6V0D2 Missense_Mutation p.D217N 0.30 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 8 87474042 87474042 G A WWP1 Missense_Mutation p.G879D 0.20 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1Q-06 8 95550502 95550502 G A KIAA1429 Silent p.F84F 0.25 TCGA-W3-AA1Q-06 8 97244076 97244076 G A UQCRB Missense_Mutation p.R62C 0.40 deleterious(0.02) possibly_damaging(0.632) TCGA-W3-AA1Q-06 8 99206992 99206992 G A NIPAL2 Silent p.L335L 0.37 TCGA-W3-AA1Q-06 9 100983179 100983179 G A TBC1D2 Missense_Mutation p.P437L 0.25 tolerated(0.16) benign(0.015) TCGA-W3-AA1Q-06 9 100991258 100991258 G A TBC1D2 Silent p.L318L 0.28 TCGA-W3-AA1Q-06 9 101798598 101798598 G A COL15A1 Missense_Mutation p.E777K 0.23 deleterious(0.01) benign(0.055) TCGA-W3-AA1Q-06 9 101980537 101980537 G A ALG2 Silent p.S310S 0.42 TCGA-W3-AA1Q-06 9 104499569 104499569 C T GRIN3A Silent p.E231E 0.34 TCGA-W3-AA1Q-06 9 109692010 109692010 T A ZNF462 Missense_Mutation p.D1939E 0.28 benign(0.13) TCGA-W3-AA1Q-06 9 113170174 113170174 C T SVEP1 Missense_Mutation p.G2569D 0.43 probably_damaging(1) TCGA-W3-AA1Q-06 9 113547172 113547172 G A MUSK Missense_Mutation p.V488I 0.33 tolerated(0.29) benign(0.073) TCGA-W3-AA1Q-06 9 113562696 113562696 C A MUSK Missense_Mutation p.H680N 0.37 tolerated(0.37) benign(0.003) TCGA-W3-AA1Q-06 9 113562735 113562735 G T MUSK Missense_Mutation p.G693W 0.39 deleterious(0.02) possibly_damaging(0.706) TCGA-W3-AA1Q-06 9 113563252 113563252 G A MUSK Missense_Mutation p.G865E 0.38 tolerated(0.1) benign(0.002) TCGA-W3-AA1Q-06 9 115631175 115631175 A G SNX30 3'UTR 0.38 TCGA-W3-AA1Q-06 9 117552998 117552998 C T TNFSF15 Missense_Mutation p.E164K 0.33 tolerated(1) benign(0.001) TCGA-W3-AA1Q-06 9 117827034 117827034 G A TNC Missense_Mutation p.R1127W 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-W3-AA1Q-06 9 120470940 120470940 C T TLR4 Missense_Mutation p.P65S 0.21 tolerated(0.41) probably_damaging(0.91) TCGA-W3-AA1Q-06 9 122011266 122011266 G A BRINP1 Silent p.T127T 0.36 TCGA-W3-AA1Q-06 9 123550192 123550192 G A FBXW2 Silent p.D115D 0.40 TCGA-W3-AA1Q-06 9 125273863 125273863 C T OR1J2 Silent p.F261F 0.30 TCGA-W3-AA1Q-06 9 125329831 125329831 G A OR1L8 Missense_Mutation p.S309F 0.29 deleterious(0.01) benign(0.201) TCGA-W3-AA1Q-06 9 129596117 129596117 C T ZBTB43 Silent p.F443F 0.31 TCGA-W3-AA1Q-06 9 130270206 130270206 G A FAM129B Silent p.L532L 0.26 TCGA-W3-AA1Q-06 9 130476921 130476921 G A PTRH1 Missense_Mutation p.P126L 0.38 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1Q-06 9 131340513 131340513 C T SPTAN1 Nonsense_Mutation p.Q404* 0.28 TCGA-W3-AA1Q-06 9 131516229 131516229 C T ZER1 Silent p.E56E 0.25 TCGA-W3-AA1Q-06 9 132565463 132565463 A G TOR1B 5'UTR 0.21 TCGA-W3-AA1Q-06 9 134366926 134366926 C T PRRC2B Missense_Mutation p.P2114S 0.38 deleterious(0.03) possibly_damaging(0.611) TCGA-W3-AA1Q-06 9 136210997 136210997 C T MED22 Silent p.E132E 0.42 TCGA-W3-AA1Q-06 9 136295109 136295109 C T ADAMTS13 Missense_Mutation p.S292F 0.53 tolerated(0.38) benign(0.208) TCGA-W3-AA1Q-06 9 136295110 136295110 C T ADAMTS13 Silent p.S292S 0.50 TCGA-W3-AA1Q-06 9 137708873 137708873 G A COL5A1 Missense_Mutation p.G1375E 0.29 unknown(0) TCGA-W3-AA1Q-06 9 139907585 139907585 G A ABCA2 Missense_Mutation p.S1579F 0.46 tolerated(0.65) benign(0.073) TCGA-W3-AA1Q-06 9 140685406 140685406 C T EHMT1 Missense_Mutation p.A830V 0.37 deleterious(0.02) probably_damaging(0.98) TCGA-W3-AA1Q-06 9 140919484 140919484 A G CACNA1B Missense_Mutation p.Q1049R 0.48 tolerated(0.37) benign(0.028) TCGA-W3-AA1Q-06 9 14770703 14770703 G A FREM1 Silent p.S1653S 0.20 TCGA-W3-AA1Q-06 9 16436784 16436784 G A BNC2 Nonsense_Mutation p.R470* 0.30 TCGA-W3-AA1Q-06 9 18950852 18950852 T G FAM154A Missense_Mutation p.Y41S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 9 21077467 21077467 C T IFNB1 Silent p.R134R 0.32 TCGA-W3-AA1Q-06 9 27294313 27294313 C T EQTN Splice_Site p.X97_splice 0.29 TCGA-W3-AA1Q-06 9 32635282 32635282 C T TAF1L Nonsense_Mutation p.W99* 0.31 TCGA-W3-AA1Q-06 9 33347068 33347068 C T NFX1 Missense_Mutation p.P793S 0.25 deleterious(0) probably_damaging(0.915) TCGA-W3-AA1Q-06 9 5908643 5908643 C T MLANA Missense_Mutation p.P98S 0.23 deleterious(0.02) benign(0.278) TCGA-W3-AA1Q-06 9 6013249 6013249 C G RANBP6 Missense_Mutation p.V787L 0.33 tolerated(0.48) benign(0.002) TCGA-W3-AA1Q-06 9 6330100 6330100 C T TPD52L3 3'UTR 0.43 TCGA-W3-AA1Q-06 9 77377951 77377951 C T TRPM6 Silent p.Q1212Q 0.36 TCGA-W3-AA1Q-06 9 78710892 78710892 C A PCSK5 Silent p.T327T 0.39 TCGA-W3-AA1Q-06 9 78965810 78965810 C T PCSK5 Missense_Mutation p.S1651L 0.31 tolerated(0.08) benign(0.004) TCGA-W3-AA1Q-06 9 79322087 79322087 C T PRUNE2 Silent p.E1701E 0.41 TCGA-W3-AA1Q-06 9 88932141 88932141 T A ZCCHC6 Missense_Mutation p.K1089N 0.32 deleterious(0.05) probably_damaging(0.958) TCGA-W3-AA1Q-06 9 89763714 89763714 G A C9orf170 Silent p.P23P 0.20 TCGA-W3-AA1Q-06 9 95078104 95078104 G A NOL8 Missense_Mutation p.S268F 0.33 tolerated(0.71) benign(0.002) TCGA-W3-AA1Q-06 9 97912316 97912316 G A FANCC Missense_Mutation p.T192I 0.29 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1Q-06 X 100400118 100400118 C T CENPI Missense_Mutation p.S544F 0.77 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1Q-06 X 101139740 101139740 T A ZMAT1 Missense_Mutation p.Y220F 0.72 tolerated(0.83) benign(0.006) TCGA-W3-AA1Q-06 X 101818230 101818230 G A NXF4 RNA 0.71 TCGA-W3-AA1Q-06 X 107225233 107225233 G A TEX13B Missense_Mutation p.S42F 0.72 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1Q-06 X 117680012 117680012 G A DOCK11 Missense_Mutation p.G164D 0.79 tolerated(0.27) probably_damaging(0.999) TCGA-W3-AA1Q-06 X 130411930 130411930 C G IGSF1 Missense_Mutation p.M745I 0.59 deleterious(0.04) probably_damaging(0.986) TCGA-W3-AA1Q-06 X 138729024 138729024 G A MCF2 Missense_Mutation p.P22S 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1Q-06 X 140785698 140785698 C T SPANXD Missense_Mutation p.R73Q 0.71 tolerated(0.2) probably_damaging(0.992) TCGA-W3-AA1Q-06 X 148037953 148037953 G A AFF2 Missense_Mutation p.R793Q 0.82 tolerated(0.09) benign(0.004) TCGA-W3-AA1Q-06 X 150869292 150869292 C T PRRG3 Silent p.P161P 0.87 TCGA-W3-AA1Q-06 X 151124224 151124224 G A GABRE Missense_Mutation p.S298F 0.77 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1Q-06 X 151358205 151358205 C T GABRA3 Missense_Mutation p.M380I 0.92 tolerated(0.24) benign(0.001) TCGA-W3-AA1Q-06 X 26157607 26157607 C T MAGEB18 Missense_Mutation p.P169S 1.00 tolerated(0.3) possibly_damaging(0.817) TCGA-W3-AA1Q-06 X 3002540 3002540 C T ARSF Silent p.S221S 0.65 TCGA-W3-AA1Q-06 X 30269364 30269364 G A MAGEB1 Missense_Mutation p.E252K 0.91 tolerated(0.14) possibly_damaging(0.734) TCGA-W3-AA1Q-06 X 3242676 3242676 C T MXRA5 Silent p.T350T 0.79 TCGA-W3-AA1Q-06 X 34961867 34961867 C T FAM47B Missense_Mutation p.L307F 0.73 deleterious(0.01) possibly_damaging(0.804) TCGA-W3-AA1Q-06 X 37029327 37029327 G A FAM47C Silent p.G948G 0.75 TCGA-W3-AA1Q-06 X 37527627 37527627 C T LANCL3 Intron 0.64 TCGA-W3-AA1Q-06 X 37664361 37664361 C T CYBB Silent p.S418S 0.79 TCGA-W3-AA1Q-06 X 48772498 48772499 TC - PIM2 Frame_Shift_Del p.K132Gfs*5 0.74 TCGA-W3-AA1Q-06 X 49105144 49105144 C T CCDC22 Silent p.V460V 0.60 TCGA-W3-AA1Q-06 X 53587349 53587349 G A HUWE1 Silent p.I2512I 0.64 TCGA-W3-AA1Q-06 X 63411783 63411783 C T AMER1 Missense_Mutation p.E462K 0.64 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1Q-06 X 70523490 70523490 C T ITGB1BP2 Missense_Mutation p.P161L 0.76 tolerated(0.19) benign(0.007) TCGA-W3-AA1Q-06 X 71802397 71802397 G A PHKA1 Missense_Mutation p.R1117C 0.76 deleterious(0.02) benign(0.049) TCGA-W3-AA1Q-06 X 73064337 73064337 G A XIST RNA 0.81 TCGA-W3-AA1Q-06 X 73961608 73961608 G T KIAA2022 Silent p.L928L 0.67 TCGA-W3-AA1Q-06 X 79939513 79939513 G T BRWD3 Nonsense_Mutation p.S1410* 0.57 TCGA-W3-AA1Q-06 Y 2847106 2847106 T A ZFY Missense_Mutation p.F493Y 0.76 tolerated(0.5) benign(0.023) TCGA-W3-AA1R-06 10 101841262 101841262 C T CPN1 Missense_Mutation p.E41K 0.34 tolerated(0.27) benign(0.309) TCGA-W3-AA1R-06 10 102738955 102738955 G A SEMA4G Missense_Mutation p.G304R 0.48 deleterious(0.01) benign(0.299) TCGA-W3-AA1R-06 10 103871041 103871041 G A LDB1 Missense_Mutation p.P49S 0.34 tolerated(0.1) possibly_damaging(0.694) TCGA-W3-AA1R-06 10 105184854 105184854 C T PDCD11 Silent p.L959L 0.38 TCGA-W3-AA1R-06 10 105361950 105361950 G A SH3PXD2A Missense_Mutation p.L981F 0.34 deleterious(0.05) possibly_damaging(0.867) TCGA-W3-AA1R-06 10 105923989 105923989 C T WDR96 Missense_Mutation p.E1037K 0.16 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1R-06 10 108337062 108337062 G A SORCS1 Intron 0.57 TCGA-W3-AA1R-06 10 108378022 108378022 G A SORCS1 Silent p.I935I 0.37 TCGA-W3-AA1R-06 10 112724162 112724162 C T SHOC2 Missense_Mutation p.P16S 0.44 tolerated_low_confidence(0.95) benign(0.001) TCGA-W3-AA1R-06 10 114185150 114185150 G A ACSL5 Missense_Mutation p.G606R 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 10 115350628 115350628 G A NRAP Silent p.F1555F 0.44 TCGA-W3-AA1R-06 10 116038601 116038601 C T VWA2 Missense_Mutation p.P275L 0.37 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1R-06 10 116615072 116615072 C T FAM160B1 Silent p.F640F 0.32 TCGA-W3-AA1R-06 10 116887485 116887485 C T ATRNL1 Missense_Mutation p.S207L 0.32 deleterious(0.04) possibly_damaging(0.83) TCGA-W3-AA1R-06 10 118439028 118439028 G A HSPA12A Silent p.A424A 0.47 TCGA-W3-AA1R-06 10 118466721 118466721 G A HSPA12A Missense_Mutation p.S39F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-W3-AA1R-06 10 123844686 123844686 G A TACC2 Missense_Mutation p.G891R 0.47 benign(0.384) TCGA-W3-AA1R-06 10 124390582 124390582 G A DMBT1 Nonsense_Mutation p.W1915* 0.45 TCGA-W3-AA1R-06 10 124591700 124591700 C T CUZD1 3'UTR 0.31 TCGA-W3-AA1R-06 10 124593213 124593213 C T CUZD1 Silent p.R542R 0.37 TCGA-W3-AA1R-06 10 124742891 124742891 G A PSTK Silent p.L204L 0.38 TCGA-W3-AA1R-06 10 127462431 127462431 G A MMP21 Silent p.A222A 0.40 TCGA-W3-AA1R-06 10 127462432 127462432 G A MMP21 Missense_Mutation p.A222V 0.44 tolerated(0.16) benign(0.315) TCGA-W3-AA1R-06 10 128973773 128973773 C T FAM196A Missense_Mutation p.G296E 0.45 tolerated(0.16) probably_damaging(0.957) TCGA-W3-AA1R-06 10 131964815 131964815 C T GLRX3 Nonsense_Mutation p.Q175* 0.48 TCGA-W3-AA1R-06 10 13231046 13231046 G A MCM10 Missense_Mutation p.G462R 0.71 deleterious(0.01) benign(0.341) TCGA-W3-AA1R-06 10 134622168 134622168 G A TTC40 Silent p.P2635P 0.55 TCGA-W3-AA1R-06 10 135011950 135011950 C T KNDC1 Silent p.S672S 0.58 TCGA-W3-AA1R-06 10 135084242 135084242 G A ADAM8 Silent p.Y544Y 0.78 TCGA-W3-AA1R-06 10 135125446 135125446 G A ZNF511 Intron 0.52 TCGA-W3-AA1R-06 10 15590507 15590507 C A ITGA8 Nonsense_Mutation p.E943* 0.71 TCGA-W3-AA1R-06 10 16942734 16942734 G A CUBN Missense_Mutation p.S2767L 0.67 tolerated(0.09) benign(0.029) TCGA-W3-AA1R-06 10 16960637 16960637 C T CUBN Silent p.K2328K 0.80 TCGA-W3-AA1R-06 10 20106087 20106087 T C PLXDC2 Missense_Mutation p.F27L 0.62 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1R-06 10 24762201 24762201 C T KIAA1217 Silent p.A297A 0.70 TCGA-W3-AA1R-06 10 24790380 24790380 C T KIAA1217 Missense_Mutation p.P636L 0.70 tolerated(0.05) benign(0.018) TCGA-W3-AA1R-06 10 24834954 24834954 G A KIAA1217 Missense_Mutation p.G1845R 0.68 tolerated(0.13) probably_damaging(0.998) TCGA-W3-AA1R-06 10 31809108 31809108 C T ZEB1 Missense_Mutation p.S283F 0.76 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 10 33199350 33199350 T C ITGB1 Silent p.G655G 0.67 TCGA-W3-AA1R-06 10 34626240 34626240 G A PARD3 Silent p.F844F 0.46 TCGA-W3-AA1R-06 10 35855072 35855072 C T CCNY Missense_Mutation p.P290S 0.68 tolerated(0.38) probably_damaging(0.998) TCGA-W3-AA1R-06 10 35896528 35896528 G A GJD4 Silent p.T29T 0.45 TCGA-W3-AA1R-06 10 37482011 37482011 T A ANKRD30A Silent p.G788G 0.57 TCGA-W3-AA1R-06 10 38344288 38344288 C T ZNF33A Silent p.P412P 0.30 TCGA-W3-AA1R-06 10 45602488 45602488 G A RSU1P2 RNA 0.43 TCGA-W3-AA1R-06 10 48370841 48370841 G A ZNF488 Silent p.T103T 0.37 TCGA-W3-AA1R-06 10 48739391 48739391 C T PTPN20B Silent p.T398T 0.45 TCGA-W3-AA1R-06 10 49420141 49420141 A C FRMPD2 Missense_Mutation p.S489R 0.30 tolerated(0.12) benign(0.022) TCGA-W3-AA1R-06 10 50532604 50532604 C T C10orf71 Missense_Mutation p.L672F 0.22 tolerated(0.77) benign(0.027) TCGA-W3-AA1R-06 10 50857678 50857678 C T CHAT Nonsense_Mutation p.Q503* 0.38 TCGA-W3-AA1R-06 10 50859972 50859972 C T CHAT Silent p.N518N 0.46 TCGA-W3-AA1R-06 10 50902507 50902507 G A C10orf53 Intron 0.25 TCGA-W3-AA1R-06 10 50916685 50916685 G A C10orf53 3'UTR 0.38 TCGA-W3-AA1R-06 10 52103961 52103961 C T SGMS1 5'UTR 0.64 TCGA-W3-AA1R-06 10 54529056 54529077 AGCCAGGCTACTATCACCATCT - MBL2 Splice_Site p.X102_splice 0.23 TCGA-W3-AA1R-06 10 54531227 54531227 C T MBL2 Missense_Mutation p.G57R 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 10 61023896 61023896 C T FAM13C Missense_Mutation p.E325K 0.38 tolerated(0.26) probably_damaging(0.999) TCGA-W3-AA1R-06 10 61830966 61830966 C T ANK3 Missense_Mutation p.E3225K 0.40 benign(0.003) TCGA-W3-AA1R-06 10 61932718 61932718 C T ANK3 Silent p.G774G 0.34 TCGA-W3-AA1R-06 10 61962840 61962840 G A ANK3 Missense_Mutation p.H438Y 0.37 probably_damaging(0.998) TCGA-W3-AA1R-06 10 69881353 69881353 G A MYPN Missense_Mutation p.G53E 0.36 tolerated(1) benign(0.002) TCGA-W3-AA1R-06 10 70056091 70056091 G A PBLD Missense_Mutation p.P72L 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 10 71008243 71008243 C T HKDC1 Silent p.L443L 0.36 TCGA-W3-AA1R-06 10 71175711 71175711 G A TACR2 Silent p.S123S 0.44 TCGA-W3-AA1R-06 10 72358533 72358533 A C PRF1 Missense_Mutation p.L315R 0.38 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1R-06 10 73115922 73115922 C T SLC29A3 Missense_Mutation p.A232V 0.40 tolerated(0.09) benign(0.393) TCGA-W3-AA1R-06 10 73498384 73498384 G A CDH23 Missense_Mutation p.D1452N 0.46 deleterious(0.01) probably_damaging(0.959) TCGA-W3-AA1R-06 10 73551057 73551057 C T CDH23 5'Flank 0.42 TCGA-W3-AA1R-06 10 73553057 73553057 C T CDH23 5'Flank 0.28 TCGA-W3-AA1R-06 10 73822444 73822444 C T SPOCK2 3'UTR 0.31 TCGA-W3-AA1R-06 10 74034993 74034993 T C DDIT4 3'UTR 0.50 TCGA-W3-AA1R-06 10 74684185 74684185 C T OIT3 Missense_Mutation p.H384Y 0.43 tolerated(1) benign(0.217) TCGA-W3-AA1R-06 10 74806836 74806836 G A P4HA1 Silent p.L308L 0.41 TCGA-W3-AA1R-06 10 75391711 75391711 C T MYOZ1 Missense_Mutation p.D293N 0.42 tolerated(0.09) probably_damaging(0.945) TCGA-W3-AA1R-06 10 76074462 76074462 C T ADK Missense_Mutation p.H78Y 0.42 deleterious(0.01) benign(0.022) TCGA-W3-AA1R-06 10 79572069 79572069 G A DLG5 Silent p.I1364I 0.53 TCGA-W3-AA1R-06 10 79579671 79579671 G A DLG5 Missense_Mutation p.P1170S 0.42 tolerated(0.4) benign(0.05) TCGA-W3-AA1R-06 10 79760798 79760798 C T POLR3A Missense_Mutation p.S805N 0.37 tolerated(0.21) benign(0.06) TCGA-W3-AA1R-06 10 81317214 81317214 C T SFTPA2 Silent p.R166R 0.34 TCGA-W3-AA1R-06 10 82033557 82033557 G A MAT1A Missense_Mutation p.P390S 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.65) TCGA-W3-AA1R-06 10 84744859 84744859 C T NRG3 Missense_Mutation p.S530L 0.42 deleterious_low_confidence(0.04) benign(0.006) TCGA-W3-AA1R-06 10 858887 858887 A G LARP4B Silent p.T732T 0.43 TCGA-W3-AA1R-06 10 88419694 88419694 C T OPN4 Silent p.S292S 0.40 TCGA-W3-AA1R-06 10 89717711 89717711 C T PTEN Missense_Mutation p.P246S 0.40 tolerated(0.18) benign(0.06) TCGA-W3-AA1R-06 10 89717712 89717712 C T PTEN Missense_Mutation p.P246L 0.40 tolerated(0.06) benign(0.132) TCGA-W3-AA1R-06 10 90672819 90672819 T C STAMBPL1 Intron 0.54 TCGA-W3-AA1R-06 10 90774141 90774141 C T FAS Silent p.I314I 0.29 TCGA-W3-AA1R-06 10 95097668 95097668 C T MYOF Silent p.E1447E 0.39 TCGA-W3-AA1R-06 10 96540285 96540285 G A CYP2C19 Missense_Mutation p.G171S 0.42 tolerated(0.59) benign(0.191) TCGA-W3-AA1R-06 10 96541593 96541593 C T CYP2C19 Missense_Mutation p.P220S 0.50 tolerated(0.19) benign(0.064) TCGA-W3-AA1R-06 10 96698543 96698543 C T CYP2C9 Missense_Mutation p.P35L 0.33 deleterious(0.01) possibly_damaging(0.59) TCGA-W3-AA1R-06 10 96707616 96707616 G A CYP2C9 Missense_Mutation p.D188N 0.32 deleterious(0.04) benign(0.201) TCGA-W3-AA1R-06 10 96741058 96741058 C T CYP2C9 Silent p.D360D 0.43 TCGA-W3-AA1R-06 10 96745880 96745880 G A CYP2C9 Missense_Mutation p.D414N 0.40 tolerated(0.28) possibly_damaging(0.543) TCGA-W3-AA1R-06 10 96827136 96827136 A T CYP2C8 Intron 0.43 TCGA-W3-AA1R-06 10 97951632 97951632 T A BLNK 3'UTR 0.41 TCGA-W3-AA1R-06 10 97960772 97960772 G A BLNK Missense_Mutation p.P326L 0.43 tolerated(0.1) benign(0.016) TCGA-W3-AA1R-06 10 98064286 98064286 C T DNTT Missense_Mutation p.P11L 0.35 deleterious(0) possibly_damaging(0.873) TCGA-W3-AA1R-06 10 98105587 98105587 G A OPALIN 3'UTR 0.47 TCGA-W3-AA1R-06 10 98763848 98763848 C T SLIT1 Missense_Mutation p.S1281N 0.34 tolerated(0.31) benign(0.213) TCGA-W3-AA1R-06 10 98819885 98819885 G A SLIT1 Silent p.I324I 0.45 TCGA-W3-AA1R-06 11 101833348 101833348 C T KIAA1377 Missense_Mutation p.P528S 0.53 tolerated(0.28) probably_damaging(0.917) TCGA-W3-AA1R-06 11 102826001 102826001 G A MMP13 Silent p.S114S 0.72 TCGA-W3-AA1R-06 11 10517275 10517275 G A AMPD3 Silent p.R484R 0.35 TCGA-W3-AA1R-06 11 105732865 105732865 T C GRIA4 Silent p.L201L 0.82 TCGA-W3-AA1R-06 11 10651141 10651141 C T MRVI1 Missense_Mutation p.R173Q 0.50 deleterious(0.04) probably_damaging(0.969) TCGA-W3-AA1R-06 11 106810513 106810513 G A GUCY1A2 Silent p.I293I 0.62 TCGA-W3-AA1R-06 11 108380502 108380502 C T EXPH5 Nonsense_Mutation p.W1911* 0.79 TCGA-W3-AA1R-06 11 108380821 108380821 C T EXPH5 Missense_Mutation p.D1805N 0.66 tolerated(0.4) benign(0.018) TCGA-W3-AA1R-06 11 110454381 110454381 G A ARHGAP20 Missense_Mutation p.S499F 0.77 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1R-06 11 111888546 111888546 G A DIXDC1 Silent p.R635R 0.40 TCGA-W3-AA1R-06 11 11394152 11394152 G A GALNT18 Silent p.F334F 0.39 TCGA-W3-AA1R-06 11 114393741 114393741 C T NXPE1 Missense_Mutation p.G181E 0.54 tolerated(0.29) benign(0.013) TCGA-W3-AA1R-06 11 116661355 116661355 C T APOA5 Missense_Mutation p.S197N 0.74 deleterious(0.01) benign(0.245) TCGA-W3-AA1R-06 11 117307977 117307977 G A DSCAML1 Silent p.G1587G 0.71 TCGA-W3-AA1R-06 11 117712720 117712720 C T FXYD6 Missense_Mutation p.D28N 0.79 tolerated(0.12) probably_damaging(0.956) TCGA-W3-AA1R-06 11 118348688 118348688 C T KMT2A Missense_Mutation p.S1114L 0.60 probably_damaging(0.961) TCGA-W3-AA1R-06 11 120531041 120531041 C T GRIK4 Missense_Mutation p.S5L 0.75 tolerated(0.18) benign(0) TCGA-W3-AA1R-06 11 121028854 121028854 C T TECTA Missense_Mutation p.P1537L 0.61 tolerated(0.1) possibly_damaging(0.801) TCGA-W3-AA1R-06 11 121477654 121477654 C T SORL1 Silent p.I1683I 0.83 TCGA-W3-AA1R-06 11 123814360 123814360 G A OR6T1 Silent p.F62F 0.66 TCGA-W3-AA1R-06 11 123909400 123909400 G A OR10G7 Silent p.F103F 0.24 TCGA-W3-AA1R-06 11 124180576 124180576 G A OR8D1 Silent p.L29L 0.70 TCGA-W3-AA1R-06 11 124489538 124489538 C T PANX3 Missense_Mutation p.R296W 0.72 deleterious(0.02) possibly_damaging(0.483) TCGA-W3-AA1R-06 11 124740958 124740958 G A ROBO3 Missense_Mutation p.G361E 0.65 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 11 124756571 124756571 C T ROBO4 Silent p.R861R 0.91 TCGA-W3-AA1R-06 11 124756901 124756901 C T ROBO4 Missense_Mutation p.E803K 0.60 deleterious(0.01) benign(0.292) TCGA-W3-AA1R-06 11 125885274 125885274 G A CDON Missense_Mutation p.P354S 0.67 tolerated(0.57) benign(0.144) TCGA-W3-AA1R-06 11 1263691 1263691 G A MUC5B Missense_Mutation p.D1861N 0.20 unknown(0) TCGA-W3-AA1R-06 11 128709068 128709068 G A KCNJ1 Silent p.P376P 0.76 TCGA-W3-AA1R-06 11 132180065 132180065 C A NTM Missense_Mutation p.L241M 0.64 deleterious(0.03) possibly_damaging(0.839) TCGA-W3-AA1R-06 11 134241031 134241031 G A GLB1L2 Missense_Mutation p.D449N 0.82 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 11 1491612 1491612 G A MOB2 Silent p.A199A 0.52 TCGA-W3-AA1R-06 11 16339909 16339909 G A SOX6 Intron 0.47 TCGA-W3-AA1R-06 11 1643088 1643088 C T KRTAP5-4 Missense_Mutation p.G79E 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-W3-AA1R-06 11 16824597 16824597 G A PLEKHA7 Silent p.V693V 0.49 TCGA-W3-AA1R-06 11 16834661 16834661 T C PLEKHA7 Missense_Mutation p.K669R 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1R-06 11 16838617 16838617 G A PLEKHA7 Silent p.F532F 0.34 TCGA-W3-AA1R-06 11 17527396 17527396 G A USH1C Missense_Mutation p.A705V 0.36 tolerated_low_confidence(0.05) benign(0.002) TCGA-W3-AA1R-06 11 18498020 18498020 G A LDHAL6A Missense_Mutation p.E228K 0.45 tolerated(1) benign(0.015) TCGA-W3-AA1R-06 11 19077093 19077093 C T MRGPRX2 Missense_Mutation p.R286K 0.39 deleterious(0.02) benign(0.272) TCGA-W3-AA1R-06 11 20676343 20676343 G A SLC6A5 Missense_Mutation p.D775N 0.25 deleterious(0.05) benign(0.079) TCGA-W3-AA1R-06 11 22747930 22747930 C T GAS2 Silent p.C120C 0.27 TCGA-W3-AA1R-06 11 237091 237091 C T PSMD13 Silent p.S14S 0.17 TCGA-W3-AA1R-06 11 24936055 24936055 C T LUZP2 Missense_Mutation p.R165C 0.49 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1R-06 11 26582626 26582626 G A MUC15 Missense_Mutation p.R358C 0.31 deleterious(0) benign(0.272) TCGA-W3-AA1R-06 11 26743107 26743107 G A SLC5A12 Missense_Mutation p.P52L 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 11 2683195 2683195 G A KCNQ1 Silent p.R466R 0.56 TCGA-W3-AA1R-06 11 293874 293874 G A ATHL1 Silent p.R553R 0.21 TCGA-W3-AA1R-06 11 30601908 30601908 T A MPPED2 Missense_Mutation p.I5F 0.28 tolerated_low_confidence(0.07) benign(0.009) TCGA-W3-AA1R-06 11 30922018 30922018 C T DCDC1 Missense_Mutation p.R1510K 0.33 tolerated(1) benign(0) TCGA-W3-AA1R-06 11 3115542 3115542 G A OSBPL5 Silent p.T548T 0.32 TCGA-W3-AA1R-06 11 31815301 31815301 C T PAX6 Missense_Mutation p.R286K 0.46 tolerated(0.07) probably_damaging(0.979) TCGA-W3-AA1R-06 11 31823158 31823158 C T PAX6 Missense_Mutation p.R117Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 11 32739681 32739681 G A CCDC73 Missense_Mutation p.H50Y 0.69 deleterious(0.01) benign(0.118) TCGA-W3-AA1R-06 11 33363178 33363178 G A HIPK3 Missense_Mutation p.G615S 0.34 tolerated(0.21) possibly_damaging(0.624) TCGA-W3-AA1R-06 11 33565002 33565002 C T KIAA1549L Silent p.S334S 0.33 TCGA-W3-AA1R-06 11 36594903 36594903 G A RAG1 Missense_Mutation p.E17K 0.35 deleterious_low_confidence(0.04) probably_damaging(0.931) TCGA-W3-AA1R-06 11 36614341 36614341 C T RAG2 Missense_Mutation p.D460N 0.42 tolerated(0.12) benign(0.166) TCGA-W3-AA1R-06 11 399013 399013 C T PKP3 Missense_Mutation p.P364S 0.35 tolerated(0.07) possibly_damaging(0.741) TCGA-W3-AA1R-06 11 40136877 40136877 C T LRRC4C Silent p.S322S 0.50 TCGA-W3-AA1R-06 11 40137597 40137597 G A LRRC4C Silent p.N82N 0.41 TCGA-W3-AA1R-06 11 46911958 46911958 G A LRP4 Silent p.T595T 0.53 TCGA-W3-AA1R-06 11 48157826 48157826 C T PTPRJ Silent p.P617P 0.30 TCGA-W3-AA1R-06 11 48267363 48267363 C T OR4X2 Silent p.F236F 0.38 TCGA-W3-AA1R-06 11 48347263 48347263 G T OR4C3 Silent p.G257G 0.07 TCGA-W3-AA1R-06 11 4843076 4843076 G A OR51F2 Missense_Mutation p.R154Q 0.46 deleterious(0.04) possibly_damaging(0.776) TCGA-W3-AA1R-06 11 487014 487014 G A PTDSS2 Missense_Mutation p.G171R 0.44 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 11 487015 487015 G A PTDSS2 Missense_Mutation p.G171E 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 11 494655 494655 G A RNH1 3'UTR 0.45 TCGA-W3-AA1R-06 11 49598292 49598292 C T RP11-707M1.1 RNA 0.42 TCGA-W3-AA1R-06 11 49974029 49974029 C T OR4C13 Missense_Mutation p.P19S 0.24 deleterious_low_confidence(0.04) benign(0.128) TCGA-W3-AA1R-06 11 5020453 5020453 C T OR51L1 Missense_Mutation p.P81S 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1R-06 11 51411656 51411656 A C OR4A5 Missense_Mutation p.F247C 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1R-06 11 5172738 5172738 G A OR52A1 Missense_Mutation p.P288S 0.30 deleterious(0.02) possibly_damaging(0.795) TCGA-W3-AA1R-06 11 5254187 5254187 C T HBD 3'UTR 0.46 TCGA-W3-AA1R-06 11 5364438 5364438 G A OR51B5 Missense_Mutation p.S106F 0.46 deleterious(0) probably_damaging(0.933) TCGA-W3-AA1R-06 11 55063004 55063004 C T TRIM51HP RNA 0.20 TCGA-W3-AA1R-06 11 55065704 55065704 G A TRIM51HP RNA 0.39 TCGA-W3-AA1R-06 11 5530046 5530046 G A UBQLN3 Missense_Mutation p.P248L 0.31 deleterious(0) possibly_damaging(0.89) TCGA-W3-AA1R-06 11 55322011 55322011 G A OR4C15 Missense_Mutation p.E77K 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-W3-AA1R-06 11 55322137 55322137 C T OR4C15 Silent p.L119L 0.43 TCGA-W3-AA1R-06 11 55340081 55340081 C T OR4C16 Missense_Mutation p.L160F 0.28 tolerated(0.4) probably_damaging(0.995) TCGA-W3-AA1R-06 11 55406034 55406034 C T OR4P4 Silent p.S67S 0.75 TCGA-W3-AA1R-06 11 55541647 55541647 C T OR5D13 Missense_Mutation p.S245F 0.45 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 11 55563529 55563529 C T OR5D14 Silent p.L166L 0.43 TCGA-W3-AA1R-06 11 55563854 55563854 G A OR5D14 Missense_Mutation p.V275M 0.34 deleterious(0.02) possibly_damaging(0.817) TCGA-W3-AA1R-06 11 55587817 55587817 G A OR5D18 Missense_Mutation p.A238T 0.31 tolerated(0.07) possibly_damaging(0.558) TCGA-W3-AA1R-06 11 55606278 55606278 G A OR5D16 Silent p.L17L 0.24 TCGA-W3-AA1R-06 11 55606279 55606279 G A OR5D16 Missense_Mutation p.G18S 0.24 deleterious(0.01) possibly_damaging(0.847) TCGA-W3-AA1R-06 11 55607183 55607183 G A OR5D16 Nonsense_Mutation p.W319* 0.47 TCGA-W3-AA1R-06 11 55890287 55890287 G A OR8H3 Missense_Mutation p.G147R 0.27 deleterious(0.02) benign(0.164) TCGA-W3-AA1R-06 11 56085899 56085899 G A OR8K3 Silent p.V39V 0.32 TCGA-W3-AA1R-06 11 56127974 56127974 C T OR8J1 Silent p.N84N 0.30 TCGA-W3-AA1R-06 11 56258184 56258184 G A OR5M8 Silent p.F221F 0.30 TCGA-W3-AA1R-06 11 56344856 56344856 G A OR5M10 Silent p.F114F 0.54 TCGA-W3-AA1R-06 11 56431664 56431664 A C OR5AR1 Missense_Mutation p.Y168S 0.25 deleterious(0) probably_damaging(0.94) TCGA-W3-AA1R-06 11 5655957 5655957 G A TRIM34 Missense_Mutation p.E206K 0.14 tolerated(0.22) possibly_damaging(0.792) TCGA-W3-AA1R-06 11 56949295 56949295 G A LRRC55 5'UTR 0.38 TCGA-W3-AA1R-06 11 56950090 56950090 G A LRRC55 Nonsense_Mutation p.W241* 0.25 TCGA-W3-AA1R-06 11 57076381 57076381 G A TNKS1BP1 Silent p.F1268F 0.29 TCGA-W3-AA1R-06 11 57147203 57147203 C T PRG3 Missense_Mutation p.E47K 0.39 tolerated(0.09) benign(0.245) TCGA-W3-AA1R-06 11 57263553 57263553 G A SLC43A1 Missense_Mutation p.L215F 0.28 tolerated(0.88) benign(0.068) TCGA-W3-AA1R-06 11 57310131 57310131 G A SMTNL1 Missense_Mutation p.G24R 0.41 deleterious(0.02) benign(0.018) TCGA-W3-AA1R-06 11 5776254 5776254 G A OR52N4 Missense_Mutation p.G95E 0.62 tolerated(0.42) benign(0.027) TCGA-W3-AA1R-06 11 57886281 57886281 G A OR9I1 Silent p.S212S 0.38 TCGA-W3-AA1R-06 11 57995989 57995989 G C OR10Q1 Missense_Mutation p.A120G 0.40 tolerated(0.06) possibly_damaging(0.893) TCGA-W3-AA1R-06 11 5809312 5809312 G C OR52N1 Silent p.A245A 0.69 TCGA-W3-AA1R-06 11 58170680 58170680 T A OR5B3 Missense_Mutation p.D68V 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-W3-AA1R-06 11 58170681 58170681 C G OR5B3 Missense_Mutation p.D68H 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-W3-AA1R-06 11 58170682 58170682 C T OR5B3 Silent p.V67V 0.25 TCGA-W3-AA1R-06 11 58723443 58723443 G A GLYATL1 Silent p.E315E 0.53 TCGA-W3-AA1R-06 11 59211589 59211589 G A OR5A1 Silent p.%3D 0.42 TCGA-W3-AA1R-06 11 59599243 59599243 C T GIF Missense_Mutation p.G367D 0.25 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1R-06 11 59814594 59814594 G A OOSP2 3'UTR 0.34 TCGA-W3-AA1R-06 11 60073628 60073628 C T MS4A4A Missense_Mutation p.S201F 0.20 deleterious(0.01) possibly_damaging(0.68) TCGA-W3-AA1R-06 11 61032596 61032596 C T VWCE Missense_Mutation p.R685Q 0.38 tolerated(0.68) benign(0.003) TCGA-W3-AA1R-06 11 61077855 61077855 G A DDB1 Silent p.F771F 0.26 TCGA-W3-AA1R-06 11 61291357 61291357 G A SYT7 Silent p.I358I 0.27 TCGA-W3-AA1R-06 11 61504698 61504698 C T DAGLA Silent p.S472S 0.25 TCGA-W3-AA1R-06 11 619588 619588 C T CDHR5 Splice_Site p.X394_splice 0.51 TCGA-W3-AA1R-06 11 62414490 62414490 G A INTS5 3'UTR 0.48 TCGA-W3-AA1R-06 11 6245404 6245404 G T FAM160A2 Missense_Mutation p.N71K 0.55 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 11 62592926 62592926 G A STX5 Missense_Mutation p.T170I 0.46 deleterious(0.01) possibly_damaging(0.806) TCGA-W3-AA1R-06 11 62948200 62948200 C T SLC22A25 Silent p.K334K 0.26 TCGA-W3-AA1R-06 11 62996996 62996996 G A SLC22A25 Silent p.F43F 0.28 TCGA-W3-AA1R-06 11 63071643 63071643 C T SLC22A10 Missense_Mutation p.S450F 0.46 deleterious(0.02) possibly_damaging(0.694) TCGA-W3-AA1R-06 11 63078590 63078590 G A SLC22A10 3'UTR 0.52 TCGA-W3-AA1R-06 11 63320404 63320404 G A HRASLS2 3'UTR 0.52 TCGA-W3-AA1R-06 11 63681768 63681768 C T RCOR2 Missense_Mutation p.E214K 0.61 deleterious(0.04) possibly_damaging(0.787) TCGA-W3-AA1R-06 11 64121226 64121226 C T CCDC88B Silent p.L1291L 0.23 TCGA-W3-AA1R-06 11 64338497 64338497 G A SLC22A11 Missense_Mutation p.E546K 0.32 tolerated(0.69) benign(0.01) TCGA-W3-AA1R-06 11 65630865 65630881 AACACCCCCCACTTAGT - MUS81 Splice_Site p.X249_splice 0.24 TCGA-W3-AA1R-06 11 65793511 65793511 C T CATSPER1 Missense_Mutation p.D114N 0.53 tolerated(0.77) possibly_damaging(0.888) TCGA-W3-AA1R-06 11 67379938 67379938 C T NDUFV1 3'UTR 0.58 TCGA-W3-AA1R-06 11 67402343 67402343 G A TBX10 Silent p.S107S 0.44 TCGA-W3-AA1R-06 11 67402532 67402532 C T TBX10 Silent p.E70E 0.50 TCGA-W3-AA1R-06 11 68525083 68525083 C T CPT1A 3'UTR 0.40 TCGA-W3-AA1R-06 11 6913246 6913246 G A OR2D2 Silent p.F162F 0.46 TCGA-W3-AA1R-06 11 70194442 70194442 C T PPFIA1 Silent p.S693S 0.46 TCGA-W3-AA1R-06 11 7021525 7021525 G A ZNF214 Silent p.V463V 0.38 TCGA-W3-AA1R-06 11 7063650 7063650 G A NLRP14 Silent p.K131K 0.27 TCGA-W3-AA1R-06 11 71146756 71146756 C T DHCR7 Missense_Mutation p.D365N 0.25 tolerated(0.71) benign(0.012) TCGA-W3-AA1R-06 11 71948595 71948595 C T INPPL1 Missense_Mutation p.P1103S 0.35 tolerated(0.43) possibly_damaging(0.641) TCGA-W3-AA1R-06 11 73635737 73635737 T C PAAF1 Missense_Mutation p.Y366H 0.40 deleterious(0) possibly_damaging(0.671) TCGA-W3-AA1R-06 11 73676000 73676000 C T DNAJB13 Missense_Mutation p.P138S 0.54 tolerated(0.06) benign(0.013) TCGA-W3-AA1R-06 11 74555305 74555305 G A XRRA1 Silent p.L643L 0.48 TCGA-W3-AA1R-06 11 75298392 75298392 G A MAP6 Silent p.P718P 0.43 TCGA-W3-AA1R-06 11 76858844 76858844 G A MYO7A Missense_Mutation p.E45K 0.48 deleterious(0.02) probably_damaging(0.938) TCGA-W3-AA1R-06 11 76905533 76905533 G A MYO7A Silent p.E1429E 0.30 TCGA-W3-AA1R-06 11 7949702 7949702 C A OR10A6 Missense_Mutation p.G170C 0.28 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1R-06 11 7960728 7960728 G A OR10A3 Missense_Mutation p.L114F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 11 7981237 7981237 C T NLRP10 Missense_Mutation p.G641E 0.29 deleterious(0.04) possibly_damaging(0.549) TCGA-W3-AA1R-06 11 802357 802357 G A PIDD Silent p.A338A 0.43 TCGA-W3-AA1R-06 11 83810057 83810057 C T DLG2 Missense_Mutation p.G220R 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 11 84027920 84027920 C T DLG2 Intron 0.59 TCGA-W3-AA1R-06 11 85593695 85593695 G A CCDC83 Missense_Mutation p.R107K 0.28 tolerated(0.51) possibly_damaging(0.599) TCGA-W3-AA1R-06 11 8751928 8751928 G A ST5 Silent p.L303L 0.49 TCGA-W3-AA1R-06 11 8751936 8751936 G T ST5 Missense_Mutation p.P301T 0.48 deleterious(0.01) possibly_damaging(0.782) TCGA-W3-AA1R-06 11 88300274 88300274 G A GRM5 Silent p.S859S 0.32 TCGA-W3-AA1R-06 11 89392739 89392739 G A FOLH1B RNA 0.30 TCGA-W3-AA1R-06 11 8940924 8940924 C T AKIP1 Missense_Mutation p.P177L 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 11 89413774 89413774 C T FOLH1B Intron 0.36 TCGA-W3-AA1R-06 11 89774599 89774599 G A TRIM49C Missense_Mutation p.D414N 0.35 tolerated(0.09) possibly_damaging(0.533) TCGA-W3-AA1R-06 11 92086891 92086891 C T FAT3 Missense_Mutation p.S538F 0.50 possibly_damaging(0.464) TCGA-W3-AA1R-06 11 92087454 92087454 G C FAT3 Missense_Mutation p.D726H 0.43 probably_damaging(0.962) TCGA-W3-AA1R-06 11 92600048 92600048 G A FAT3 Missense_Mutation p.D3934N 0.41 probably_damaging(1) TCGA-W3-AA1R-06 11 93170729 93170729 C T CCDC67 Silent p.F553F 0.39 TCGA-W3-AA1R-06 11 93778951 93778951 C T HEPHL1 Missense_Mutation p.P95S 0.53 tolerated(0.8) benign(0.005) TCGA-W3-AA1R-06 11 94906359 94906359 C T SESN3 3'UTR 0.68 TCGA-W3-AA1R-06 11 9805954 9805954 C T SBF2 Missense_Mutation p.A1755T 0.55 deleterious(0) benign(0.131) TCGA-W3-AA1R-06 12 101295567 101295567 G A ANO4 Missense_Mutation p.E2K 0.23 deleterious_low_confidence(0.02) benign(0) TCGA-W3-AA1R-06 12 101581281 101581281 G A SLC5A8 Silent p.I282I 0.29 TCGA-W3-AA1R-06 12 101794888 101794888 G A ARL1 Silent p.D96D 0.32 TCGA-W3-AA1R-06 12 104134534 104134534 G A STAB2 Missense_Mutation p.A1961T 0.34 deleterious(0) probably_damaging(0.949) TCGA-W3-AA1R-06 12 104460059 104460059 A G HCFC2 Missense_Mutation p.Y93C 0.39 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1R-06 12 105385590 105385590 A T C12orf45 Missense_Mutation p.E101D 0.35 deleterious(0.01) probably_damaging(0.931) TCGA-W3-AA1R-06 12 108686032 108686032 G A CMKLR1 Silent p.I236I 0.34 TCGA-W3-AA1R-06 12 108985586 108985586 C T TMEM119 Missense_Mutation p.G192S 0.29 tolerated(0.13) benign(0.194) TCGA-W3-AA1R-06 12 109609708 109609710 ATC - ACACB In_Frame_Del p.I342del 0.26 TCGA-W3-AA1R-06 12 109971300 109971300 C T UBE3B Silent p.L984L 0.37 TCGA-W3-AA1R-06 12 111956088 111956088 G A ATXN2 Missense_Mutation p.P537L 0.40 benign(0.017) TCGA-W3-AA1R-06 12 112681515 112681515 G A HECTD4 Missense_Mutation p.S1421L 0.32 benign(0.306) TCGA-W3-AA1R-06 12 113325631 113325631 G A RPH3A Missense_Mutation p.G489D 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-W3-AA1R-06 12 114804057 114804057 C T TBX5 Missense_Mutation p.G299S 0.41 tolerated(1) benign(0.004) TCGA-W3-AA1R-06 12 11506765 11506765 C T PRB1 Missense_Mutation p.R91Q 0.29 tolerated_low_confidence(0.33) unknown(0) TCGA-W3-AA1R-06 12 11546130 11546130 G A PRB2 Silent p.S294S 0.25 TCGA-W3-AA1R-06 12 117160913 117160913 C T C12orf49 Missense_Mutation p.R76H 0.45 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1R-06 12 117462004 117462004 C T FBXW8 Missense_Mutation p.H474Y 0.50 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1R-06 12 117728201 117728201 T A NOS1 Nonsense_Mutation p.K295* 0.45 TCGA-W3-AA1R-06 12 117768933 117768933 G A NOS1 5'Flank 0.56 TCGA-W3-AA1R-06 12 117962980 117962980 G A KSR2 Silent p.F632F 0.53 TCGA-W3-AA1R-06 12 12006442 12006442 G A ETV6 Missense_Mutation p.G137E 0.29 deleterious(0.03) possibly_damaging(0.858) TCGA-W3-AA1R-06 12 120436357 120436357 A G CCDC64 Silent p.R154R 0.38 TCGA-W3-AA1R-06 12 120763735 120763735 G A PLA2G1B Silent p.F41F 0.49 TCGA-W3-AA1R-06 12 121890974 121890974 G A KDM2B Silent p.F636F 0.48 TCGA-W3-AA1R-06 12 122017954 122017954 C T KDM2B Intron 0.35 TCGA-W3-AA1R-06 12 122017955 122017955 C T KDM2B Intron 0.34 TCGA-W3-AA1R-06 12 122190122 122190122 C T TMEM120B Missense_Mutation p.H152Y 0.36 deleterious(0.05) benign(0.003) TCGA-W3-AA1R-06 12 122404890 122404890 C T WDR66 Missense_Mutation p.S841F 0.51 deleterious(0.01) possibly_damaging(0.894) TCGA-W3-AA1R-06 12 122404891 122404891 C T WDR66 Silent p.S841S 0.50 TCGA-W3-AA1R-06 12 122717402 122717402 G A VPS33A Silent p.L518L 0.26 TCGA-W3-AA1R-06 12 12303968 12303968 A G LRP6 Silent p.P932P 0.55 TCGA-W3-AA1R-06 12 123213935 123213935 G A HCAR1 Missense_Mutation p.L318F 0.45 tolerated(0.12) benign(0.01) TCGA-W3-AA1R-06 12 123460877 123460877 C T OGFOD2 5'UTR 0.31 TCGA-W3-AA1R-06 12 124270333 124270333 C T DNAH10 Missense_Mutation p.T363I 0.38 possibly_damaging(0.897) TCGA-W3-AA1R-06 12 124796466 124796466 G A FAM101A Missense_Mutation p.E23K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 12 12483627 12483627 G A MANSC1 Silent p.S210S 0.24 TCGA-W3-AA1R-06 12 125270930 125270930 G A SCARB1 Silent p.V458V 0.30 TCGA-W3-AA1R-06 12 125575971 125575971 G A AACS Splice_Site p.X158_splice 0.30 TCGA-W3-AA1R-06 12 126139061 126139061 G A TMEM132B Missense_Mutation p.M1014I 0.40 tolerated(0.37) benign(0) TCGA-W3-AA1R-06 12 12630758 12630758 G A DUSP16 Missense_Mutation p.P336L 0.38 tolerated(0.35) benign(0) TCGA-W3-AA1R-06 12 129558641 129558641 C T TMEM132D Missense_Mutation p.G1027R 0.35 tolerated(0.08) benign(0.138) TCGA-W3-AA1R-06 12 13061495 13061495 C T GPRC5A Silent p.L104L 0.45 TCGA-W3-AA1R-06 12 130898778 130898778 G A RIMBP2 Silent p.L848L 0.38 TCGA-W3-AA1R-06 12 130929807 130929807 G A RIMBP2 Missense_Mutation p.P180S 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 12 130941064 130941064 C T RIMBP2 Missense_Mutation p.G95D 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA1R-06 12 132504593 132504593 G A EP400 Splice_Site p.X1426_splice 0.44 TCGA-W3-AA1R-06 12 13906733 13906733 G A GRIN2B Silent p.F176F 0.42 TCGA-W3-AA1R-06 12 14689540 14689540 C T PLBD1 Silent p.K221K 0.55 TCGA-W3-AA1R-06 12 14952625 14952625 A T WBP11 Nonsense_Mutation p.L45* 0.40 TCGA-W3-AA1R-06 12 1741826 1741826 C T WNT5B Missense_Mutation p.S28L 0.27 tolerated(0.13) benign(0.048) TCGA-W3-AA1R-06 12 18691100 18691100 C T PIK3C2G Missense_Mutation p.P1071S 0.44 deleterious(0.01) probably_damaging(0.951) TCGA-W3-AA1R-06 12 18719906 18719906 C T PIK3C2G Missense_Mutation p.P1268L 0.41 deleterious(0.03) possibly_damaging(0.765) TCGA-W3-AA1R-06 12 21028319 21028319 C T SLCO1B3 Missense_Mutation p.S293L 0.29 deleterious(0.04) benign(0.16) TCGA-W3-AA1R-06 12 21036418 21036418 G A SLCO1B3 Missense_Mutation p.G522S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 12 21175870 21175870 C T SLCO1B7 Missense_Mutation p.P143S 0.26 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 12 21176140 21176140 G A SLCO1B7 Missense_Mutation p.G169R 0.22 deleterious(0) benign(0.187) TCGA-W3-AA1R-06 12 21196484 21196484 G A SLCO1B7 Missense_Mutation p.R268K 0.21 tolerated(0.9) benign(0.001) TCGA-W3-AA1R-06 12 21958199 21958199 G A ABCC9 Intron 0.18 TCGA-W3-AA1R-06 12 21970158 21970158 G A ABCC9 Silent p.F1285F 0.34 TCGA-W3-AA1R-06 12 26592087 26592087 C A ITPR2 Nonsense_Mutation p.E2206* 0.27 TCGA-W3-AA1R-06 12 2676958 2676958 G A CACNA1C Silent p.T631T 0.58 TCGA-W3-AA1R-06 12 2721229 2721229 A C CACNA1C Intron 0.58 TCGA-W3-AA1R-06 12 2794903 2794903 C T CACNA1C Missense_Mutation p.L1907F 0.14 tolerated_low_confidence(0.51) benign(0.003) TCGA-W3-AA1R-06 12 2927424 2927424 C T ITFG2 Silent p.V129V 0.21 TCGA-W3-AA1R-06 12 31945068 31945068 G A H3F3C Silent p.S11S 0.25 TCGA-W3-AA1R-06 12 32772721 32772721 G A FGD4 Missense_Mutation p.M476I 0.40 deleterious(0.02) probably_damaging(0.965) TCGA-W3-AA1R-06 12 33579160 33579195 GGGATGTCAGGGGAAGTGTGGCTGATTTTTATTGCA - SYT10 In_Frame_Del p.I131_A142del 0.20 TCGA-W3-AA1R-06 12 33579170 33579170 G A SYT10 Missense_Mutation p.P138S 0.72 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 12 3789464 3789464 C T EFCAB4B Missense_Mutation p.D94N 0.51 deleterious(0.03) possibly_damaging(0.843) TCGA-W3-AA1R-06 12 42840522 42840522 T C PPHLN1 3'UTR 1.00 TCGA-W3-AA1R-06 12 44180548 44180548 T C IRAK4 3'UTR 0.68 TCGA-W3-AA1R-06 12 4554734 4554734 C T FGF6 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-W3-AA1R-06 12 46633606 46633606 G A SLC38A1 5'UTR 0.82 TCGA-W3-AA1R-06 12 4735823 4735823 G A AKAP3 Missense_Mutation p.P749S 0.35 tolerated(0.4) possibly_damaging(0.896) TCGA-W3-AA1R-06 12 48736773 48736773 C T ZNF641 Missense_Mutation p.G434R 0.67 tolerated(0.14) benign(0.039) TCGA-W3-AA1R-06 12 49298118 49298118 C T CCDC65 5'UTR 0.59 TCGA-W3-AA1R-06 12 49434303 49434303 G A KMT2D Missense_Mutation p.S2417F 0.72 probably_damaging(0.996) TCGA-W3-AA1R-06 12 50570965 50570965 G A LIMA1 Missense_Mutation p.T722I 0.64 deleterious(0.05) benign(0.275) TCGA-W3-AA1R-06 12 51125183 51125183 C T DIP2B Missense_Mutation p.P1225S 0.65 deleterious(0.03) possibly_damaging(0.817) TCGA-W3-AA1R-06 12 5153736 5153736 C T KCNA5 Silent p.F141F 0.48 TCGA-W3-AA1R-06 12 51851224 51851224 C T SLC4A8 Missense_Mutation p.H222Y 0.59 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 12 52174494 52174494 C T SCN8A Missense_Mutation p.S1294F 0.73 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 12 52200471 52200471 G A SCN8A Missense_Mutation p.G1734E 0.60 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 12 52711500 52711500 G A KRT83 Nonsense_Mutation p.Q239* 0.81 TCGA-W3-AA1R-06 12 52761088 52761088 G A KRT85 Silent p.I34I 0.62 TCGA-W3-AA1R-06 12 53683246 53683246 C T ESPL1 Missense_Mutation p.L1661F 0.71 deleterious(0.02) benign(0.327) TCGA-W3-AA1R-06 12 54686769 54686769 C T NFE2 Missense_Mutation p.E171K 0.37 tolerated(0.1) benign(0.18) TCGA-W3-AA1R-06 12 54743419 54743419 C T COPZ1 Missense_Mutation p.L155F 0.36 tolerated(0.23) benign(0.007) TCGA-W3-AA1R-06 12 55252089 55252089 C T MUCL1 3'UTR 0.33 TCGA-W3-AA1R-06 12 55421167 55421167 C T NEUROD4 Missense_Mutation p.S315F 0.44 deleterious(0.04) possibly_damaging(0.613) TCGA-W3-AA1R-06 12 55794778 55794778 C T OR6C65 Missense_Mutation p.P156S 0.36 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-W3-AA1R-06 12 55820739 55820739 C T OR6C76 Silent p.A234A 0.38 TCGA-W3-AA1R-06 12 56082723 56082723 C T ITGA7 Missense_Mutation p.A959T 0.44 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1R-06 12 56088753 56088753 C T ITGA7 Missense_Mutation p.D673N 0.55 tolerated(0.15) possibly_damaging(0.549) TCGA-W3-AA1R-06 12 56486563 56486563 C T ERBB3 Missense_Mutation p.P381L 0.32 deleterious(0) possibly_damaging(0.84) TCGA-W3-AA1R-06 12 57351207 57351207 G A RDH16 Missense_Mutation p.L14F 0.29 tolerated(0.05) benign(0.417) TCGA-W3-AA1R-06 12 57389320 57389320 G A GPR182 Nonsense_Mutation p.W109* 0.51 TCGA-W3-AA1R-06 12 57431712 57431712 G A MYO1A Silent p.F634F 0.36 TCGA-W3-AA1R-06 12 57437645 57437645 C T MYO1A Missense_Mutation p.G296E 0.41 tolerated(1) benign(0.004) TCGA-W3-AA1R-06 12 57594503 57594503 G A LRP1 Missense_Mutation p.G3377E 0.43 probably_damaging(0.999) TCGA-W3-AA1R-06 12 57648709 57648709 G A R3HDM2 Silent p.L926L 0.32 TCGA-W3-AA1R-06 12 58152530 58152530 C T MARCH9 Silent p.S297S 0.50 TCGA-W3-AA1R-06 12 6128208 6128208 T A VWF Missense_Mutation p.D1459V 0.25 deleterious(0.01) possibly_damaging(0.855) TCGA-W3-AA1R-06 12 6309700 6309700 A G CD9 Missense_Mutation p.Y12C 0.26 deleterious(0.03) probably_damaging(0.988) TCGA-W3-AA1R-06 12 65471574 65471574 G A WIF1 Missense_Mutation p.P117S 0.45 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 12 65856990 65856990 G A MSRB3 Missense_Mutation p.R156K 0.38 deleterious(0.02) probably_damaging(0.979) TCGA-W3-AA1R-06 12 6602288 6602288 G A MRPL51 Silent p.L5L 0.26 TCGA-W3-AA1R-06 12 66642009 66642009 T C IRAK3 3'UTR 0.40 TCGA-W3-AA1R-06 12 66786523 66786523 C T GRIP1 Missense_Mutation p.E683K 0.45 deleterious(0.02) possibly_damaging(0.767) TCGA-W3-AA1R-06 12 66786570 66786570 C T GRIP1 Missense_Mutation p.R667Q 0.31 deleterious(0.04) benign(0.35) TCGA-W3-AA1R-06 12 66788030 66788030 G A GRIP1 Missense_Mutation p.P644L 0.36 deleterious(0) possibly_damaging(0.486) TCGA-W3-AA1R-06 12 6884730 6884730 G A LAG3 Intron 0.34 TCGA-W3-AA1R-06 12 70003714 70003714 C T LRRC10 3'UTR 0.38 TCGA-W3-AA1R-06 12 7169776 7169776 C T C1S Intron 0.38 TCGA-W3-AA1R-06 12 72070495 72070495 G A THAP2 Silent p.K98K 0.38 TCGA-W3-AA1R-06 12 7288067 7288067 G A CLSTN3 Silent p.Q176Q 0.34 TCGA-W3-AA1R-06 12 72969034 72969034 G A TRHDE Splice_Site p.X666_splice 0.18 TCGA-W3-AA1R-06 12 7459334 7459334 G A ACSM4 Missense_Mutation p.R136Q 0.45 deleterious(0.02) probably_damaging(0.984) TCGA-W3-AA1R-06 12 7640444 7640444 G A CD163 Missense_Mutation p.L554F 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 12 7649659 7649659 G A CD163 Silent p.F283F 0.22 TCGA-W3-AA1R-06 12 7842431 7842431 G A GDF3 3'UTR 0.43 TCGA-W3-AA1R-06 12 81661810 81661810 G A PPFIA2 Nonsense_Mutation p.R1123* 0.31 TCGA-W3-AA1R-06 12 82147765 82147765 G A PPFIA2 Missense_Mutation p.S79L 0.27 deleterious(0.04) benign(0.343) TCGA-W3-AA1R-06 12 86198798 86198798 C T RASSF9 Silent p.L330L 0.31 TCGA-W3-AA1R-06 12 86373541 86373541 C T MGAT4C Silent p.T321T 0.40 TCGA-W3-AA1R-06 12 86373675 86373675 A T MGAT4C Missense_Mutation p.L277I 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA1R-06 12 91445191 91445191 C T KERA Missense_Mutation p.E331K 0.46 tolerated(0.56) benign(0.004) TCGA-W3-AA1R-06 12 94976281 94976281 G A TMCC3 Missense_Mutation p.P38S 0.45 tolerated(0.14) probably_damaging(0.998) TCGA-W3-AA1R-06 12 96421284 96421284 G A LTA4H Nonsense_Mutation p.Q117* 0.32 TCGA-W3-AA1R-06 12 9906072 9906072 C T CD69 3'UTR 0.28 TCGA-W3-AA1R-06 13 101728248 101728248 C T NALCN Silent p.R1310R 0.40 TCGA-W3-AA1R-06 13 102344979 102344979 C T ITGBL1 Missense_Mutation p.R354C 0.45 tolerated_low_confidence(0.06) benign(0.258) TCGA-W3-AA1R-06 13 102375215 102375215 C T FGF14 Missense_Mutation p.G242E 0.40 deleterious(0) possibly_damaging(0.905) TCGA-W3-AA1R-06 13 103343197 103343197 G A METTL21C Missense_Mutation p.S83F 0.42 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 13 107823105 107823105 C T FAM155A Missense_Mutation p.E373K 0.52 deleterious(0.04) benign(0.154) TCGA-W3-AA1R-06 13 108862428 108862428 G A LIG4 Missense_Mutation p.P397S 0.43 tolerated(0.2) benign(0.009) TCGA-W3-AA1R-06 13 111077101 111077101 C T COL4A2 Silent p.G67G 0.36 TCGA-W3-AA1R-06 13 113477679 113477679 T A ATP11A Missense_Mutation p.L249Q 0.40 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1R-06 13 114112352 114112352 G A DCUN1D2 Missense_Mutation p.L258F 0.38 tolerated_low_confidence(0.12) benign(0.013) TCGA-W3-AA1R-06 13 19753644 19753644 C T TUBA3C Nonsense_Mutation p.W21* 0.36 TCGA-W3-AA1R-06 13 20763123 20763123 C T GJB2 Missense_Mutation p.G200R 0.34 deleterious(0.03) possibly_damaging(0.814) TCGA-W3-AA1R-06 13 20797133 20797133 G A GJB6 Silent p.L163L 0.38 TCGA-W3-AA1R-06 13 28588589 28588589 C T FLT3 Silent p.A953A 0.40 TCGA-W3-AA1R-06 13 28622500 28622500 A G FLT3 Missense_Mutation p.F373L 0.45 tolerated(0.65) benign(0.022) TCGA-W3-AA1R-06 13 32367002 32367002 C T RXFP2 Silent p.F521F 0.41 TCGA-W3-AA1R-06 13 32753052 32753052 A T FRY Missense_Mutation p.Y918F 0.33 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 13 33252996 33252996 C T PDS5B Silent p.I329I 0.25 TCGA-W3-AA1R-06 13 33634920 33634920 G A KL Silent p.R568R 0.25 TCGA-W3-AA1R-06 13 33635211 33635211 C T KL Silent p.A665A 0.54 TCGA-W3-AA1R-06 13 33739543 33739543 G A STARD13 Missense_Mutation p.P85L 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 13 35615094 35615094 G T NBEA Nonsense_Mutation p.E107* 0.36 TCGA-W3-AA1R-06 13 38160305 38160305 C T POSTN Missense_Mutation p.R289K 0.42 deleterious(0.01) possibly_damaging(0.901) TCGA-W3-AA1R-06 13 38211653 38211653 G A TRPC4 Missense_Mutation p.S779L 0.35 tolerated(0.33) benign(0.001) TCGA-W3-AA1R-06 13 38211763 38211763 C T TRPC4 Splice_Site p.X743_splice 0.39 TCGA-W3-AA1R-06 13 39357225 39357225 C T FREM2 Missense_Mutation p.P1887L 0.27 deleterious(0) possibly_damaging(0.652) TCGA-W3-AA1R-06 13 45540053 45540053 G A NUFIP1 Silent p.A251A 0.14 TCGA-W3-AA1R-06 13 46287736 46287736 G A SPERT Silent p.E192E 0.35 TCGA-W3-AA1R-06 13 52511770 52511770 C T ATP7B Missense_Mutation p.V1249M 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 13 52549297 52549297 G A ATP7B Missense_Mutation p.S20F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-W3-AA1R-06 13 52604471 52604471 G A UTP14C Missense_Mutation p.E511K 0.34 tolerated(0.08) benign(0.05) TCGA-W3-AA1R-06 13 72204782 72204782 C T DACH1 Silent p.V346V 0.42 TCGA-W3-AA1R-06 13 96515898 96515898 C A UGGT2 Missense_Mutation p.W1210L 0.24 deleterious(0.03) benign(0.008) TCGA-W3-AA1R-06 13 96515899 96515899 A T UGGT2 Missense_Mutation p.W1210R 0.23 deleterious(0.03) benign(0.019) TCGA-W3-AA1R-06 13 96515900 96515900 C A UGGT2 Silent p.L1209L 0.21 TCGA-W3-AA1R-06 13 99376193 99376193 C T SLC15A1 Missense_Mutation p.G113D 0.49 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1R-06 14 101348261 101348261 G A RTL1 Silent p.A955A 0.38 TCGA-W3-AA1R-06 14 101521068 101521068 C T MIR134 RNA 0.37 TCGA-W3-AA1R-06 14 102467510 102467510 C T DYNC1H1 Missense_Mutation p.S1405F 0.40 probably_damaging(0.999) TCGA-W3-AA1R-06 14 102484791 102484791 C T DYNC1H1 Silent p.F2727F 0.44 TCGA-W3-AA1R-06 14 102549981 102549981 A G HSP90AA1 Missense_Mutation p.L585S 0.36 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1R-06 14 102675668 102675668 C T WDR20 Silent p.I418I 0.41 TCGA-W3-AA1R-06 14 105415161 105415161 G C AHNAK2 Missense_Mutation p.D2209E 0.41 benign(0.302) TCGA-W3-AA1R-06 14 105415767 105415767 G A AHNAK2 Silent p.I2007I 0.44 TCGA-W3-AA1R-06 14 105420946 105420946 G A AHNAK2 Missense_Mutation p.S281L 0.38 benign(0.214) TCGA-W3-AA1R-06 14 105455351 105455351 C G C14orf79 Missense_Mutation p.D165E 0.45 tolerated(0.16) benign(0.046) TCGA-W3-AA1R-06 14 106573538 106573538 C T IGHV3-11 Splice_Site p.X16_splice 0.34 TCGA-W3-AA1R-06 14 106621988 106621988 C T IGHV3-16 Missense_Mutation p.R86Q 0.43 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-W3-AA1R-06 14 106757737 106757737 G A IGHV2-26 Silent p.I90I 0.36 TCGA-W3-AA1R-06 14 107178929 107178929 G A IGHV2-70 Missense_Mutation p.S83F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 14 107219103 107219103 G A IGHV3-74 Silent p.F9F 0.36 TCGA-W3-AA1R-06 14 19378033 19378033 A G OR11H12 Missense_Mutation p.Y147C 0.19 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 14 19559049 19559049 C T POTEG Missense_Mutation p.P232L 0.62 deleterious(0.03) benign(0.045) TCGA-W3-AA1R-06 14 20216089 20216089 C T OR4Q3 Missense_Mutation p.P168L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 14 20248716 20248716 C T OR4M1 Missense_Mutation p.P79S 0.29 deleterious(0) possibly_damaging(0.607) TCGA-W3-AA1R-06 14 20249337 20249337 C A OR4M1 Missense_Mutation p.P286T 0.20 deleterious(0) probably_damaging(0.959) TCGA-W3-AA1R-06 14 20345367 20345367 C T OR4K2 Missense_Mutation p.S314L 0.20 deleterious_low_confidence(0.02) benign(0.118) TCGA-W3-AA1R-06 14 20665920 20665920 C T OR11G2 Silent p.F142F 0.38 TCGA-W3-AA1R-06 14 21052552 21052552 C T RNASE11 Missense_Mutation p.E28K 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1R-06 14 21109054 21109054 G A OR6S1 Missense_Mutation p.S266L 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1R-06 14 21870591 21870591 G A CHD8 Silent p.S1262S 0.33 TCGA-W3-AA1R-06 14 22005015 22005015 G A SALL2 Missense_Mutation p.S14L 0.41 deleterious(0) benign(0.048) TCGA-W3-AA1R-06 14 22134028 22134028 C T OR4E2 Silent p.F244F 0.48 TCGA-W3-AA1R-06 14 22446836 22446836 C T TRAV8-6 5'UTR 0.40 TCGA-W3-AA1R-06 14 22539348 22539348 C T TRAV22 Missense_Mutation p.P70S 0.40 tolerated(0.26) benign(0.008) TCGA-W3-AA1R-06 14 22564730 22564730 C T TRDV1 Missense_Mutation p.P61S 0.39 tolerated(0.18) benign(0.103) TCGA-W3-AA1R-06 14 22600932 22600932 C T TRAV8-7 Silent p.L93L 0.35 TCGA-W3-AA1R-06 14 22981866 22981866 G A TRAJ30 Missense_Mutation p.G12R 0.38 unknown(0) TCGA-W3-AA1R-06 14 23354010 23354010 C T REM2 Silent p.L77L 0.48 TCGA-W3-AA1R-06 14 23511434 23511434 G A PSMB11 5'UTR 0.38 TCGA-W3-AA1R-06 14 23817477 23817477 A G SLC22A17 Missense_Mutation p.I244T 0.48 deleterious(0) benign(0.315) TCGA-W3-AA1R-06 14 23855298 23855298 C T MYH6 Missense_Mutation p.D1668N 0.44 deleterious(0.02) probably_damaging(0.955) TCGA-W3-AA1R-06 14 23938907 23938907 G A NGDN 5'UTR 0.32 TCGA-W3-AA1R-06 14 24838729 24838729 C T NFATC4 Missense_Mutation p.P105L 0.36 tolerated(0.06) benign(0.059) TCGA-W3-AA1R-06 14 24886207 24886207 C T NYNRIN Missense_Mutation p.S1751F 0.56 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-W3-AA1R-06 14 24975764 24975764 C T CMA1 Missense_Mutation p.D86N 0.51 tolerated(0.38) benign(0.343) TCGA-W3-AA1R-06 14 31596999 31596999 G A HECTD1 Missense_Mutation p.S1658F 0.40 deleterious(0) possibly_damaging(0.795) TCGA-W3-AA1R-06 14 35554866 35554866 C T PPP2R3C Nonsense_Mutation p.W431* 0.39 TCGA-W3-AA1R-06 14 38281591 38281591 C T TTC6 Missense_Mutation p.R1548C 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 14 38724445 38724445 G C CLEC14A Missense_Mutation p.N261K 0.35 tolerated(0.12) benign(0.302) TCGA-W3-AA1R-06 14 39706255 39706255 G A MIA2 Missense_Mutation p.G82E 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 14 45542770 45542770 C T FAM179B 3'UTR 0.35 TCGA-W3-AA1R-06 14 52520888 52520888 C T NID2 Missense_Mutation p.E307K 0.52 tolerated(0.07) benign(0.046) TCGA-W3-AA1R-06 14 53417258 53417258 T A FERMT2 Missense_Mutation p.D10V 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1R-06 14 57268855 57268855 G A OTX2 Silent p.S164S 0.57 TCGA-W3-AA1R-06 14 58056162 58056162 G A SLC35F4 Missense_Mutation p.S156F 0.82 deleterious(0.02) possibly_damaging(0.83) TCGA-W3-AA1R-06 14 61449245 61449245 C T SLC38A6 Missense_Mutation p.S42F 0.77 tolerated(0.4) benign(0.107) TCGA-W3-AA1R-06 14 63246595 63246596 - A KCNH5 Frame_Shift_Ins p.A624Cfs*14 0.43 TCGA-W3-AA1R-06 14 64855039 64855039 C T MTHFD1 5'Flank 0.73 TCGA-W3-AA1R-06 14 65253747 65253747 G A SPTB Missense_Mutation p.S979F 0.65 deleterious(0) probably_damaging(0.953) TCGA-W3-AA1R-06 14 65419277 65419277 T C RAB15 Missense_Mutation p.K46R 0.75 deleterious(0.03) probably_damaging(0.977) TCGA-W3-AA1R-06 14 67147897 67147897 C T GPHN Missense_Mutation p.P46L 0.62 tolerated(0.15) probably_damaging(0.986) TCGA-W3-AA1R-06 14 70419005 70419005 C T SMOC1 Nonsense_Mutation p.R84* 0.33 TCGA-W3-AA1R-06 14 70515563 70515563 G A SLC8A3 Silent p.A776A 0.38 TCGA-W3-AA1R-06 14 70633827 70633827 C A SLC8A3 Missense_Mutation p.G438V 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 14 70634690 70634690 G A SLC8A3 Silent p.L150L 0.42 TCGA-W3-AA1R-06 14 72139212 72139212 C T SIPA1L1 Missense_Mutation p.R993C 0.43 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1R-06 14 72943518 72943518 G A RGS6 Silent p.R254R 0.40 TCGA-W3-AA1R-06 14 73190397 73190397 C T DPF3 Missense_Mutation p.E157K 0.24 deleterious(0.01) benign(0.08) TCGA-W3-AA1R-06 14 73637673 73637673 T G PSEN1 Missense_Mutation p.F86V 0.53 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1R-06 14 73743362 73743362 G A NUMB Missense_Mutation p.S627F 0.29 deleterious(0.02) possibly_damaging(0.474) TCGA-W3-AA1R-06 14 73989444 73989444 G C HEATR4 Missense_Mutation p.T138R 0.06 tolerated(0.08) benign(0.03) TCGA-W3-AA1R-06 14 74756199 74756199 G A ABCD4 Silent p.V481V 0.29 TCGA-W3-AA1R-06 14 74970060 74970060 C T LTBP2 Missense_Mutation p.D1584N 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1R-06 14 76107585 76107585 C G FLVCR2 Missense_Mutation p.P468A 0.37 tolerated(1) benign(0.002) TCGA-W3-AA1R-06 14 77948828 77948828 C T ISM2 Silent p.E270E 0.41 TCGA-W3-AA1R-06 14 81302653 81302653 T C CEP128 Missense_Mutation p.K318R 0.43 tolerated(0.79) benign(0.165) TCGA-W3-AA1R-06 14 81329216 81329216 A G CEP128 Missense_Mutation p.V216A 0.39 tolerated(0.07) benign(0.039) TCGA-W3-AA1R-06 14 81744201 81744201 G A STON2 Missense_Mutation p.P485L 0.39 tolerated(0.2) probably_damaging(0.925) TCGA-W3-AA1R-06 14 89016638 89016638 C T PTPN21 Missense_Mutation p.E42K 0.30 deleterious(0) benign(0.036) TCGA-W3-AA1R-06 14 91739940 91739941 - A CCDC88C Frame_Shift_Ins p.P1706Sfs*54 0.25 TCGA-W3-AA1R-06 14 91772219 91772219 G A CCDC88C Silent p.L1083L 0.31 TCGA-W3-AA1R-06 14 92058241 92058241 C T CATSPERB Missense_Mutation p.E939K 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1R-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.43 TCGA-W3-AA1R-06 14 93170547 93170547 G A LGMN 3'UTR 0.43 TCGA-W3-AA1R-06 14 93814466 93814466 G C COX8C Nonstop_Mutation p.*73Yext*28 0.41 TCGA-W3-AA1R-06 14 94109969 94109969 C T UNC79 Silent p.V1852V 0.36 TCGA-W3-AA1R-06 14 94756685 94756685 G A SERPINA10 Silent p.F82F 0.46 TCGA-W3-AA1R-06 14 95670765 95670765 G A CLMN Silent p.I307I 0.45 TCGA-W3-AA1R-06 14 95786101 95786101 T C CLMN Missense_Mutation p.Q10R 0.35 tolerated(0.09) benign(0.42) TCGA-W3-AA1R-06 14 96136862 96136862 C T TCL6 RNA 0.35 TCGA-W3-AA1R-06 14 99865223 99865223 G A SETD3 Silent p.L526L 0.48 TCGA-W3-AA1R-06 15 21071256 21071256 C T POTEB2 Missense_Mutation p.D119N 0.28 tolerated(0.07) possibly_damaging(0.827) TCGA-W3-AA1R-06 15 22473082 22473082 C T IGHV4OR15-8 Silent p.K63K 0.18 TCGA-W3-AA1R-06 15 22980098 22980098 C T CYFIP1 Missense_Mutation p.R866W 0.43 deleterious(0) probably_damaging(0.978) TCGA-W3-AA1R-06 15 23049318 23049318 G A NIPA1 Silent p.I167I 0.63 TCGA-W3-AA1R-06 15 24921766 24921766 A T NPAP1 Missense_Mutation p.H251L 0.43 tolerated(0.06) possibly_damaging(0.699) TCGA-W3-AA1R-06 15 25207265 25207265 C T SNURF Missense_Mutation p.R7C 0.32 tolerated_low_confidence(0.2) benign(0) TCGA-W3-AA1R-06 15 25221456 25221456 A G SNRPN Missense_Mutation p.K54E 0.54 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 15 25304717 25304717 C T SNORD116-3 3'Flank 0.42 TCGA-W3-AA1R-06 15 25351672 25351672 C T SNORD116-29 RNA 0.37 TCGA-W3-AA1R-06 15 25463979 25463979 T C SNORD115-28 5'Flank 0.44 TCGA-W3-AA1R-06 15 25490478 25490478 C T SNORD115-40 3'Flank 0.31 TCGA-W3-AA1R-06 15 25924663 25924663 G A ATP10A Missense_Mutation p.S1442F 0.42 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-W3-AA1R-06 15 26825533 26825533 C T GABRB3 Silent p.R205R 0.42 TCGA-W3-AA1R-06 15 27182417 27182417 G A GABRA5 Silent p.L222L 0.51 TCGA-W3-AA1R-06 15 30001017 30001017 A T TJP1 Nonsense_Mutation p.Y1532* 0.26 TCGA-W3-AA1R-06 15 30033621 30033621 G A TJP1 Silent p.A390A 0.32 TCGA-W3-AA1R-06 15 33840398 33840398 C T RYR3 Missense_Mutation p.R270W 0.38 probably_damaging(0.992) TCGA-W3-AA1R-06 15 34649841 34649841 G A NUTM1 3'UTR 0.33 TCGA-W3-AA1R-06 15 35085471 35085471 G A ACTC1 Silent p.S143S 0.52 TCGA-W3-AA1R-06 15 38234514 38234514 C T TMCO5A Intron 0.36 TCGA-W3-AA1R-06 15 39544911 39544911 G A C15orf54 3'UTR 0.38 TCGA-W3-AA1R-06 15 39544941 39544941 C T C15orf54 3'UTR 0.54 TCGA-W3-AA1R-06 15 40005653 40005653 C T FSIP1 Missense_Mutation p.E394K 0.32 tolerated(0.09) possibly_damaging(0.654) TCGA-W3-AA1R-06 15 40321615 40321615 C T EIF2AK4 Missense_Mutation p.S1504F 0.32 deleterious(0) possibly_damaging(0.61) TCGA-W3-AA1R-06 15 40588741 40588741 C T PLCB2 Silent p.K527K 0.27 TCGA-W3-AA1R-06 15 40595528 40595528 G A PLCB2 Silent p.I64I 0.26 TCGA-W3-AA1R-06 15 42149801 42149801 C T SPTBN5 Silent p.K2778K 0.73 TCGA-W3-AA1R-06 15 43762104 43762104 G A TP53BP1 Silent p.V447V 0.41 TCGA-W3-AA1R-06 15 43821332 43821332 C T MAP1A Missense_Mutation p.P2554L 0.23 possibly_damaging(0.818) TCGA-W3-AA1R-06 15 43821333 43821333 C T MAP1A Silent p.P2554P 0.24 TCGA-W3-AA1R-06 15 43896267 43896267 C T STRC Silent p.R1434R 0.34 TCGA-W3-AA1R-06 15 45554213 45554213 G A SLC28A2 Silent p.R57R 0.24 TCGA-W3-AA1R-06 15 48757777 48757777 G A FBN1 Nonsense_Mutation p.R1644* 0.49 TCGA-W3-AA1R-06 15 49054815 49054815 G A CEP152 Nonsense_Mutation p.Q779* 0.50 TCGA-W3-AA1R-06 15 51778493 51778493 A - DMXL2 Frame_Shift_Del p.I1754Lfs*19 0.25 TCGA-W3-AA1R-06 15 51975319 51975319 C T SCG3 Missense_Mutation p.P60L 0.23 tolerated_low_confidence(0.19) benign(0.22) TCGA-W3-AA1R-06 15 52476812 52476812 C T GNB5 Missense_Mutation p.R21Q 0.40 tolerated_low_confidence(0.18) benign(0.038) TCGA-W3-AA1R-06 15 52510865 52510865 C T MYO5C Missense_Mutation p.E1269K 0.49 tolerated(0.36) benign(0.002) TCGA-W3-AA1R-06 15 52521390 52521390 C T MYO5C Silent p.G1049G 0.32 TCGA-W3-AA1R-06 15 52622621 52622621 T C MYO5A Missense_Mutation p.E1470G 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 15 52622622 52622622 C T MYO5A Missense_Mutation p.E1470K 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1R-06 15 53907641 53907641 A G WDR72 Missense_Mutation p.L921S 0.20 tolerated(0.49) benign(0.009) TCGA-W3-AA1R-06 15 54307482 54307482 C T UNC13C Silent p.F794F 0.29 TCGA-W3-AA1R-06 15 54542497 54542497 G A UNC13C Silent p.E1101E 0.16 TCGA-W3-AA1R-06 15 57356020 57356020 G A TCF12 Missense_Mutation p.R74K 0.45 deleterious(0.03) benign(0.045) TCGA-W3-AA1R-06 15 57744411 57744411 G A CGNL1 Missense_Mutation p.E660K 0.37 tolerated(0.56) benign(0) TCGA-W3-AA1R-06 15 63958601 63958601 T C HERC1 Silent p.E2759E 0.38 TCGA-W3-AA1R-06 15 64263667 64263667 C T DAPK2 Silent p.G136G 0.34 TCGA-W3-AA1R-06 15 65494305 65494305 C T CILP Missense_Mutation p.R364K 0.26 tolerated(0.32) benign(0.005) TCGA-W3-AA1R-06 15 65502172 65502172 C T CILP 5'UTR 0.33 TCGA-W3-AA1R-06 15 65686764 65686764 C T IGDCC4 Missense_Mutation p.G567S 0.24 tolerated(0.8) benign(0.013) TCGA-W3-AA1R-06 15 65916455 65916455 T C SLC24A1 Missense_Mutation p.W13R 0.44 benign(0) TCGA-W3-AA1R-06 15 66856293 66856293 C T LCTL Missense_Mutation p.R109Q 0.13 deleterious(0.05) benign(0.089) TCGA-W3-AA1R-06 15 68489929 68489929 G A RP11-315D16.2 Missense_Mutation p.H41Y 0.32 unknown(0) TCGA-W3-AA1R-06 15 68620509 68620509 C T ITGA11 Missense_Mutation p.D665N 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-W3-AA1R-06 15 69327813 69327813 C T NOX5 Silent p.S325S 0.23 TCGA-W3-AA1R-06 15 69335064 69335064 C T NOX5 Silent p.F522F 0.49 TCGA-W3-AA1R-06 15 69347733 69347733 G A NOX5 Missense_Mutation p.A687T 0.33 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1R-06 15 69548401 69548401 C T GLCE Missense_Mutation p.P86S 0.35 tolerated(0.18) benign(0.323) TCGA-W3-AA1R-06 15 69696040 69696040 C T PAQR5 Missense_Mutation p.S291F 0.52 deleterious(0.02) benign(0.299) TCGA-W3-AA1R-06 15 69732770 69732770 C T KIF23 Missense_Mutation p.R671W 0.49 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1R-06 15 71144059 71144059 C T LARP6 Intron 0.62 TCGA-W3-AA1R-06 15 71329518 71329518 G A LRRC49 Silent p.R573R 0.39 TCGA-W3-AA1R-06 15 71329553 71329553 G A LRRC49 Missense_Mutation p.G585E 0.28 tolerated(0.06) benign(0.081) TCGA-W3-AA1R-06 15 71953006 71953006 C T THSD4 Silent p.V430V 0.36 TCGA-W3-AA1R-06 15 75042563 75042563 G A CYP1A2 Missense_Mutation p.E162K 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 15 75198892 75198892 G A FAM219B Intron 0.50 TCGA-W3-AA1R-06 15 75694230 75694230 G A SIN3A Missense_Mutation p.R497C 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1R-06 15 75931874 75931874 G A IMP3 3'UTR 0.38 TCGA-W3-AA1R-06 15 77087705 77087705 G A SCAPER Missense_Mutation p.H230Y 0.44 tolerated(0.27) benign(0.007) TCGA-W3-AA1R-06 15 77759463 77759463 C T HMG20A Silent p.S88S 0.48 TCGA-W3-AA1R-06 15 77907280 77907280 C T LINGO1 Silent p.L323L 0.21 TCGA-W3-AA1R-06 15 78486847 78486847 C T ACSBG1 Splice_Site p.X151_splice 0.19 TCGA-W3-AA1R-06 15 78882972 78882972 C T CHRNA5 Silent p.V413V 0.59 TCGA-W3-AA1R-06 15 79339330 79339330 G A RASGRF1 Silent p.F212F 0.29 TCGA-W3-AA1R-06 15 79750470 79750470 C T KIAA1024 Missense_Mutation p.P661S 0.26 deleterious(0.03) benign(0.049) TCGA-W3-AA1R-06 15 81575016 81575016 T C IL16 Missense_Mutation p.V373A 0.32 deleterious(0) possibly_damaging(0.459) TCGA-W3-AA1R-06 15 83931724 83931724 G A BNC1 Missense_Mutation p.P760L 0.62 deleterious(0) benign(0.255) TCGA-W3-AA1R-06 15 83931931 83931931 C T BNC1 Missense_Mutation p.G691E 0.56 tolerated(0.22) benign(0.037) TCGA-W3-AA1R-06 15 83932835 83932835 C T BNC1 Missense_Mutation p.E390K 0.35 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1R-06 15 84159559 84159559 G A SH3GL3 Intron 0.44 TCGA-W3-AA1R-06 15 84694136 84694136 G A ADAMTSL3 Missense_Mutation p.G1535E 0.61 tolerated(0.56) benign(0.02) TCGA-W3-AA1R-06 15 84694166 84694166 T C ADAMTSL3 Missense_Mutation p.V1545A 0.57 tolerated(1) benign(0.001) TCGA-W3-AA1R-06 15 88476377 88476377 G A NTRK3 Silent p.F585F 0.29 TCGA-W3-AA1R-06 15 89398763 89398763 G A ACAN Missense_Mutation p.E983K 0.42 tolerated(0.14) possibly_damaging(0.9) TCGA-W3-AA1R-06 15 90340805 90340805 C T ANPEP Splice_Site p.X719_splice 0.32 TCGA-W3-AA1R-06 15 90771448 90771448 C T SEMA4B Missense_Mutation p.S696L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 15 91433507 91433507 C T FES Missense_Mutation p.S412L 0.42 tolerated(0.27) benign(0.011) TCGA-W3-AA1R-06 15 91510364 91510364 G A PRC1 Silent p.S620S 0.37 TCGA-W3-AA1R-06 15 92459257 92459257 A G SLCO3A1 Missense_Mutation p.N72S 0.34 tolerated(0.39) possibly_damaging(0.615) TCGA-W3-AA1R-06 15 92663839 92663839 C T SLCO3A1 Missense_Mutation p.S385F 0.40 deleterious(0) probably_damaging(0.938) TCGA-W3-AA1R-06 15 93588908 93588908 C T RGMA Missense_Mutation p.E233K 0.47 deleterious(0.03) possibly_damaging(0.805) TCGA-W3-AA1R-06 15 93595334 93595334 G A RGMA Silent p.F186F 0.46 TCGA-W3-AA1R-06 15 94841816 94841816 G A MCTP2 Missense_Mutation p.E108K 0.50 tolerated(0.09) benign(0.004) TCGA-W3-AA1R-06 16 11374807 11374807 C T PRM1 3'UTR 0.40 TCGA-W3-AA1R-06 16 11935552 11935552 T A RSL1D1 Missense_Mutation p.K285N 0.54 tolerated(0.13) benign(0.014) TCGA-W3-AA1R-06 16 11935568 11935568 A G RSL1D1 Missense_Mutation p.L280P 0.45 tolerated(0.29) benign(0.001) TCGA-W3-AA1R-06 16 15225233 15225233 G A RP11-1186N24.5 RNA 0.35 TCGA-W3-AA1R-06 16 15811115 15811115 C T MYH11 Missense_Mutation p.E1803K 0.41 possibly_damaging(0.906) TCGA-W3-AA1R-06 16 15841917 15841917 C T MYH11 Missense_Mutation p.E730K 0.42 probably_damaging(0.996) TCGA-W3-AA1R-06 16 15841918 15841918 C T MYH11 Silent p.Q729Q 0.42 TCGA-W3-AA1R-06 16 17235119 17235119 G A XYLT1 Missense_Mutation p.S493L 0.41 deleterious(0.03) probably_damaging(0.929) TCGA-W3-AA1R-06 16 18846223 18846223 G A SMG1 Missense_Mutation p.T2774I 0.35 deleterious(0.01) benign(0.021) TCGA-W3-AA1R-06 16 20371973 20371973 G A PDILT Silent p.L475L 0.45 TCGA-W3-AA1R-06 16 20552034 20552034 G T ACSM2B Missense_Mutation p.T524N 0.41 deleterious(0) benign(0.208) TCGA-W3-AA1R-06 16 20981151 20981151 C T DNAH3 Silent p.G2807G 0.43 TCGA-W3-AA1R-06 16 21011599 21011599 C T DNAH3 Missense_Mutation p.R2123Q 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 16 21049185 21049185 C T DNAH3 Silent p.L1616L 0.37 TCGA-W3-AA1R-06 16 21049287 21049287 G A DNAH3 Silent p.I1582I 0.46 TCGA-W3-AA1R-06 16 2143613 2143613 G A PKD1 Missense_Mutation p.H3650Y 0.39 benign(0.027) TCGA-W3-AA1R-06 16 2373417 2373417 A - ABCA3 Intron 0.27 TCGA-W3-AA1R-06 16 24196455 24196455 G A PRKCB Silent p.G519G 0.35 TCGA-W3-AA1R-06 16 24578591 24578591 C T RBBP6 Missense_Mutation p.P573S 0.36 tolerated_low_confidence(0.12) possibly_damaging(0.641) TCGA-W3-AA1R-06 16 24802246 24802246 T G TNRC6A Missense_Mutation p.F761L 0.30 tolerated(0.18) benign(0.001) TCGA-W3-AA1R-06 16 24870086 24870086 C T SLC5A11 Missense_Mutation p.A41V 0.28 tolerated(0.09) benign(0.033) TCGA-W3-AA1R-06 16 27495546 27495546 G A GTF3C1 Silent p.A1329A 0.36 TCGA-W3-AA1R-06 16 2820874 2820874 C T SRRM2 3'UTR 0.38 TCGA-W3-AA1R-06 16 28877959 28877959 G A SH2B1 Missense_Mutation p.A182T 0.36 tolerated(0.07) benign(0.011) TCGA-W3-AA1R-06 16 28906241 28906241 C T ATP2A1 Silent p.L462L 0.27 TCGA-W3-AA1R-06 16 2903982 2903982 G A PRSS22 Missense_Mutation p.P201S 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 16 30456595 30456595 G A SEPHS2 Missense_Mutation p.R152C 0.35 probably_damaging(0.982) TCGA-W3-AA1R-06 16 30522203 30522203 T C ITGAL Missense_Mutation p.V874A 0.32 tolerated(0.06) benign(0.014) TCGA-W3-AA1R-06 16 30529164 30529164 A T ITGAL Missense_Mutation p.Q1027L 0.34 deleterious(0.02) benign(0.045) TCGA-W3-AA1R-06 16 30615926 30615926 G A ZNF689 Silent p.L388L 0.25 TCGA-W3-AA1R-06 16 30721303 30721303 T A SRCAP Missense_Mutation p.L330M 0.45 unknown(0) TCGA-W3-AA1R-06 16 30740814 30740814 C T SRCAP Silent p.P2016P 0.37 TCGA-W3-AA1R-06 16 31073324 31073324 G A ZNF668 Nonsense_Mutation p.W171* 0.44 TCGA-W3-AA1R-06 16 31200468 31200468 C T FUS Missense_Mutation p.T286I 0.39 deleterious(0) benign(0.01) TCGA-W3-AA1R-06 16 312546 312546 C T ITFG3 Missense_Mutation p.S322F 0.29 tolerated(0.5) benign(0.001) TCGA-W3-AA1R-06 16 312547 312547 C T ITFG3 Silent p.S322S 0.30 TCGA-W3-AA1R-06 16 31477514 31477514 C T ARMC5 Silent p.S704S 0.39 TCGA-W3-AA1R-06 16 31504317 31504317 A T C16orf58 Missense_Mutation p.C357S 0.39 tolerated(0.44) benign(0) TCGA-W3-AA1R-06 16 3454520 3454520 C T ZNF174 Missense_Mutation p.P166L 0.34 tolerated(0.11) benign(0.012) TCGA-W3-AA1R-06 16 34712299 34712299 C T RP11-80F22.9 RNA 0.83 TCGA-W3-AA1R-06 16 3614899 3614899 C T NLRC3 Missense_Mutation p.D94N 0.32 tolerated(0.51) benign(0.002) TCGA-W3-AA1R-06 16 3778284 3778284 G A CREBBP Missense_Mutation p.P2255L 0.27 unknown(0) TCGA-W3-AA1R-06 16 4385291 4385291 C A GLIS2 Silent p.I224I 0.40 TCGA-W3-AA1R-06 16 46952614 46952614 T C GPT2 Missense_Mutation p.S328P 0.81 tolerated(0.05) benign(0.102) TCGA-W3-AA1R-06 16 56670888 56670888 G A MT1M 3'Flank 0.78 TCGA-W3-AA1R-06 16 57068108 57068108 G A NLRC5 Missense_Mutation p.D858N 0.60 tolerated(0.28) benign(0.005) TCGA-W3-AA1R-06 16 57717849 57717849 C T GPR97 Missense_Mutation p.S296F 0.79 tolerated(0.46) benign(0.056) TCGA-W3-AA1R-06 16 615018 615018 G A C16orf11 Missense_Mutation p.G476E 0.52 deleterious(0.01) possibly_damaging(0.897) TCGA-W3-AA1R-06 16 615019 615019 G A C16orf11 Silent p.G476G 0.50 TCGA-W3-AA1R-06 16 66918146 66918146 C T PDP2 5'UTR 0.74 TCGA-W3-AA1R-06 16 67214425 67214425 G A KIAA0895L Missense_Mutation p.P30L 0.72 tolerated_low_confidence(0.57) benign(0.02) TCGA-W3-AA1R-06 16 70432189 70432189 G A ST3GAL2 Missense_Mutation p.S82F 0.69 possibly_damaging(0.71) TCGA-W3-AA1R-06 16 70975588 70975588 C T HYDIN Silent p.Q2268Q 0.54 TCGA-W3-AA1R-06 16 71196532 71196532 C T HYDIN Silent p.L206L 0.81 TCGA-W3-AA1R-06 16 72993830 72993830 G A ZFHX3 Missense_Mutation p.S72F 0.78 benign(0.302) TCGA-W3-AA1R-06 16 78011551 78011551 G A VAT1L Missense_Mutation p.G407R 0.71 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-AA1R-06 16 81972427 81972427 C T PLCG2 Missense_Mutation p.P1074S 0.60 tolerated(0.08) probably_damaging(0.996) TCGA-W3-AA1R-06 16 81979789 81979789 C T PLCG2 Missense_Mutation p.S1164F 0.69 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 16 84203637 84203637 G A DNAAF1 Silent p.V401V 0.73 TCGA-W3-AA1R-06 16 84690863 84690863 C T KLHL36 Silent p.Y150Y 0.52 TCGA-W3-AA1R-06 16 87446337 87446337 A C ZCCHC14 Missense_Mutation p.S527A 0.78 deleterious_low_confidence(0.03) benign(0.015) TCGA-W3-AA1R-06 16 90001324 90001324 G - TUBB3 Frame_Shift_Del p.R156Vfs*9 0.43 TCGA-W3-AA1R-06 16 929573 929573 G A LMF1 Silent p.F298F 0.27 TCGA-W3-AA1R-06 16 9858412 9858412 C T GRIN2A Missense_Mutation p.E997K 0.36 tolerated(0.34) possibly_damaging(0.843) TCGA-W3-AA1R-06 17 10248587 10248587 C T MYH13 Missense_Mutation p.E506K 0.72 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1R-06 17 10265790 10265790 G A MYH13 Missense_Mutation p.P79S 0.76 tolerated(0.23) probably_damaging(0.994) TCGA-W3-AA1R-06 17 10302926 10302926 C T MYH8 Missense_Mutation p.E1266K 0.67 tolerated(0.29) benign(0.155) TCGA-W3-AA1R-06 17 10362699 10362699 C T MYH4 Missense_Mutation p.E486K 0.73 deleterious(0.02) probably_damaging(0.994) TCGA-W3-AA1R-06 17 10415494 10415494 G A MYH1 Missense_Mutation p.A388V 0.71 deleterious(0) possibly_damaging(0.717) TCGA-W3-AA1R-06 17 10415777 10415777 C T MYH1 Missense_Mutation p.M365I 0.81 deleterious(0.02) benign(0.072) TCGA-W3-AA1R-06 17 11725889 11725889 C T DNAH9 Silent p.R2995R 0.54 TCGA-W3-AA1R-06 17 12666750 12666750 C T MYOCD Missense_Mutation p.S917L 0.75 tolerated(0.11) probably_damaging(0.999) TCGA-W3-AA1R-06 17 16335551 16335551 C T TRPV2 Silent p.I642I 0.76 TCGA-W3-AA1R-06 17 1657612 1657612 C T SERPINF2 Silent p.F420F 0.81 TCGA-W3-AA1R-06 17 26911493 26911493 G A SPAG5 Missense_Mutation p.R723W 0.44 tolerated(0.09) benign(0.035) TCGA-W3-AA1R-06 17 27224566 27224566 G A FLOT2 Silent p.P9P 0.60 TCGA-W3-AA1R-06 17 27822629 27822629 C T TAOK1 Nonsense_Mutation p.Q295* 0.49 TCGA-W3-AA1R-06 17 27939242 27939242 C T ANKRD13B Silent p.L403L 0.36 TCGA-W3-AA1R-06 17 30668241 30668241 G A C17orf75 Missense_Mutation p.P68L 0.36 deleterious(0.02) possibly_damaging(0.814) TCGA-W3-AA1R-06 17 3181213 3181213 G A OR3A2 3'UTR 0.48 TCGA-W3-AA1R-06 17 33328411 33328411 C T LIG3 Missense_Mutation p.P823S 0.39 tolerated(0.68) benign(0.017) TCGA-W3-AA1R-06 17 33348521 33348521 C T RFFL Missense_Mutation p.D154N 0.31 tolerated(0.35) benign(0.056) TCGA-W3-AA1R-06 17 33454283 33454283 G A FNDC8 Silent p.S144S 0.37 TCGA-W3-AA1R-06 17 35578671 35578671 G A ACACA Silent p.F1219F 0.37 TCGA-W3-AA1R-06 17 35656249 35656249 A G ACACA Intron 0.37 TCGA-W3-AA1R-06 17 37186566 37186566 G A CTD-2206N4.2 5'Flank 0.57 TCGA-W3-AA1R-06 17 37234201 37234201 G A PLXDC1 Missense_Mutation p.S384F 0.22 deleterious(0.01) possibly_damaging(0.613) TCGA-W3-AA1R-06 17 37357520 37357520 G A RPL19 Silent p.K20K 0.35 TCGA-W3-AA1R-06 17 37876074 37876074 G A ERBB2 Missense_Mutation p.E645K 0.34 tolerated(0.76) benign(0.154) TCGA-W3-AA1R-06 17 3788819 3788819 G A CAMKK1 Missense_Mutation p.P55S 0.70 deleterious(0.02) benign(0.015) TCGA-W3-AA1R-06 17 37902393 37902393 C T GRB7 Missense_Mutation p.P487S 0.39 deleterious(0.01) possibly_damaging(0.605) TCGA-W3-AA1R-06 17 37922442 37922442 G A IKZF3 Silent p.L377L 0.42 TCGA-W3-AA1R-06 17 37949026 37949026 G A IKZF3 Silent p.F108F 0.42 TCGA-W3-AA1R-06 17 38078647 38078647 G A ORMDL3 3'UTR 0.35 TCGA-W3-AA1R-06 17 39383303 39383303 A C KRTAP9-2 Missense_Mutation p.N133H 0.39 tolerated(0.08) probably_damaging(0.994) TCGA-W3-AA1R-06 17 39522734 39522734 C T KRT33B Silent p.Q192Q 0.46 TCGA-W3-AA1R-06 17 39537447 39537447 G A KRT34 Missense_Mutation p.S192F 0.33 deleterious(0) probably_damaging(0.948) TCGA-W3-AA1R-06 17 39726185 39726185 C T KRT9 Missense_Mutation p.E270K 0.44 tolerated(0.1) benign(0.1) TCGA-W3-AA1R-06 17 39727848 39727848 C T KRT9 Missense_Mutation p.G133R 0.33 tolerated_low_confidence(0.06) unknown(0) TCGA-W3-AA1R-06 17 39767141 39767141 C T KRT16 Missense_Mutation p.G342S 0.29 tolerated(0.32) benign(0.145) TCGA-W3-AA1R-06 17 40267026 40267026 T C KAT2A Missense_Mutation p.K635E 0.40 deleterious(0) possibly_damaging(0.646) TCGA-W3-AA1R-06 17 40940201 40940201 G A WNK4 Silent p.G639G 0.48 TCGA-W3-AA1R-06 17 40956365 40956365 G A CNTD1 Missense_Mutation p.R123H 0.27 tolerated(0.45) possibly_damaging(0.806) TCGA-W3-AA1R-06 17 40997137 40997137 G A AOC2 Missense_Mutation p.R165H 0.19 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 17 41006598 41006598 C T AOC3 Silent p.L578L 0.30 TCGA-W3-AA1R-06 17 41362141 41362141 T C NBR1 3'UTR 0.42 TCGA-W3-AA1R-06 17 41561487 41561487 C T DHX8 Silent p.L28L 0.44 TCGA-W3-AA1R-06 17 42092373 42092373 G - TMEM101 5'UTR 0.38 TCGA-W3-AA1R-06 17 42458287 42458287 G A ITGA2B Silent p.S451S 0.40 TCGA-W3-AA1R-06 17 44171972 44171972 C T KANSL1 Missense_Mutation p.R462Q 0.23 deleterious(0) possibly_damaging(0.79) TCGA-W3-AA1R-06 17 45361817 45361817 A C ITGB3 Missense_Mutation p.K124Q 0.23 tolerated(0.81) benign(0.003) TCGA-W3-AA1R-06 17 45425210 45425210 G A EFCAB13 Missense_Mutation p.R185Q 0.41 tolerated(0.17) benign(0.127) TCGA-W3-AA1R-06 17 4585820 4585820 G A PELP1 Missense_Mutation p.P207S 0.70 probably_damaging(0.98) TCGA-W3-AA1R-06 17 46865262 46865262 C T TTLL6 Silent p.L500L 0.37 TCGA-W3-AA1R-06 17 4692925 4692925 G A GLTPD2 Silent p.G97G 0.76 TCGA-W3-AA1R-06 17 47126797 47126797 G A IGF2BP1 Silent p.R575R 0.37 TCGA-W3-AA1R-06 17 48356314 48356314 G A TMEM92 Missense_Mutation p.R108K 0.32 tolerated(0.07) possibly_damaging(0.626) TCGA-W3-AA1R-06 17 48597043 48597043 G A MYCBPAP Missense_Mutation p.G314R 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 17 48597044 48597044 G A MYCBPAP Missense_Mutation p.G314E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 17 4936651 4936651 G A SLC52A1 Silent p.L347L 0.75 TCGA-W3-AA1R-06 17 50212387 50212387 C T CA10 Intron 0.54 TCGA-W3-AA1R-06 17 5051929 5051929 C T USP6 Missense_Mutation p.P837L 0.56 deleterious_low_confidence(0.03) probably_damaging(0.983) TCGA-W3-AA1R-06 17 53798405 53798405 G A TMEM100 Silent p.I9I 0.50 TCGA-W3-AA1R-06 17 55926677 55926677 G A MRPS23 Nonsense_Mutation p.Q47* 0.57 TCGA-W3-AA1R-06 17 55946487 55946487 T C CUEDC1 Silent p.G312G 0.36 TCGA-W3-AA1R-06 17 56058025 56058025 T C VEZF1 Silent p.L305L 0.34 TCGA-W3-AA1R-06 17 56355401 56355401 T A MPO Missense_Mutation p.N331Y 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 17 56395791 56395791 G A BZRAP1 Silent p.S574S 0.40 TCGA-W3-AA1R-06 17 56621342 56621342 C T C17orf47 Missense_Mutation p.R69Q 0.46 tolerated(0.16) benign(0) TCGA-W3-AA1R-06 17 58258762 58258762 G A USP32 Missense_Mutation p.H1491Y 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-W3-AA1R-06 17 58258763 58258763 G A USP32 Silent p.N1490N 0.42 TCGA-W3-AA1R-06 17 59668047 59668047 C T NACA2 Silent p.E165E 0.46 TCGA-W3-AA1R-06 17 59668532 59668532 C T NACA2 Missense_Mutation p.E4K 0.54 tolerated(0.06) possibly_damaging(0.905) TCGA-W3-AA1R-06 17 61574304 61574304 G A ACE Missense_Mutation p.E1217K 0.53 deleterious(0.04) possibly_damaging(0.796) TCGA-W3-AA1R-06 17 61607834 61607834 G A KCNH6 Silent p.T202T 0.38 TCGA-W3-AA1R-06 17 61607835 61607835 G A KCNH6 Missense_Mutation p.E203K 0.38 tolerated(0.1) possibly_damaging(0.642) TCGA-W3-AA1R-06 17 61987128 61987128 G A CSHL1 Silent p.V204V 0.45 TCGA-W3-AA1R-06 17 62462558 62462558 G A MILR1 Splice_Site p.X31_splice 0.46 TCGA-W3-AA1R-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.36 deleterious(0) possibly_damaging(0.817) TCGA-W3-AA1R-06 17 62892388 62892388 G A LRRC37A3 Missense_Mutation p.P330S 0.18 tolerated(0.16) benign(0.006) TCGA-W3-AA1R-06 17 64208191 64208191 T A APOH 3'UTR 0.30 TCGA-W3-AA1R-06 17 68172062 68172062 C T KCNJ2 Silent p.I294I 0.48 TCGA-W3-AA1R-06 17 691296 691296 C T RNMTL1 Silent p.L217L 0.68 TCGA-W3-AA1R-06 17 71354272 71354272 C T SDK2 Missense_Mutation p.G1847R 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1R-06 17 71398143 71398143 G A SDK2 Silent p.F874F 0.41 TCGA-W3-AA1R-06 17 72540781 72540781 G A CD300C Missense_Mutation p.P123S 0.30 tolerated(0.3) possibly_damaging(0.579) TCGA-W3-AA1R-06 17 72943409 72943409 G A OTOP3 Missense_Mutation p.G487R 0.29 tolerated(0.28) benign(0.035) TCGA-W3-AA1R-06 17 72943410 72943410 G A OTOP3 Missense_Mutation p.G487E 0.29 tolerated(0.78) benign(0.014) TCGA-W3-AA1R-06 17 7318277 7318277 C T NLGN2 Silent p.L283L 0.80 TCGA-W3-AA1R-06 17 73229154 73229154 T C NUP85 Missense_Mutation p.F506L 0.45 tolerated(0.06) benign(0.401) TCGA-W3-AA1R-06 17 73872471 73872471 C T TRIM47 Missense_Mutation p.G292R 0.30 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1R-06 17 73915780 73915780 G A FBF1 Nonsense_Mutation p.Q688* 0.42 TCGA-W3-AA1R-06 17 73944530 73944530 G A ACOX1 Silent p.I579I 0.38 TCGA-W3-AA1R-06 17 74014601 74014601 C T EVPL Silent p.G455G 0.42 TCGA-W3-AA1R-06 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.46 TCGA-W3-AA1R-06 17 76198665 76198665 C T AFMID Silent p.F80F 0.34 TCGA-W3-AA1R-06 17 76567441 76567441 T C DNAH17 Missense_Mutation p.N251S 0.33 benign(0.004) TCGA-W3-AA1R-06 17 76968649 76968649 G A LGALS3BP Missense_Mutation p.S256L 0.39 deleterious(0) possibly_damaging(0.755) TCGA-W3-AA1R-06 17 77708877 77708877 G A ENPP7 Silent p.G145G 0.40 TCGA-W3-AA1R-06 17 77808302 77808302 G A CBX4 Missense_Mutation p.P380L 0.40 deleterious(0) benign(0.003) TCGA-W3-AA1R-06 17 78022406 78022406 C T CCDC40 Missense_Mutation p.A234V 0.25 deleterious(0.03) benign(0.026) TCGA-W3-AA1R-06 17 78272268 78272268 C T RNF213 Silent p.A720A 0.40 TCGA-W3-AA1R-06 17 78447168 78447168 C T NPTX1 Silent p.V243V 0.45 TCGA-W3-AA1R-06 17 7917343 7917343 C T GUCY2D Silent p.D803D 0.82 TCGA-W3-AA1R-06 17 7948247 7948247 G A ALOX15B Silent p.K259K 0.58 TCGA-W3-AA1R-06 17 79913410 79913410 G A NOTUM Silent p.F333F 0.47 TCGA-W3-AA1R-06 17 80019138 80019138 G A DUS1L Silent p.H263H 0.44 TCGA-W3-AA1R-06 17 80019139 80019139 T A DUS1L Missense_Mutation p.H263L 0.44 deleterious(0.01) benign(0.01) TCGA-W3-AA1R-06 17 80223622 80223622 T A CSNK1D Nonsense_Mutation p.K43* 0.39 TCGA-W3-AA1R-06 17 80274772 80274772 C T CD7 Silent p.G56G 0.42 TCGA-W3-AA1R-06 17 80616413 80616413 G A RAB40B Silent p.I173I 0.36 TCGA-W3-AA1R-06 17 8473043 8473043 G A MYH10 Missense_Mutation p.R251C 0.71 probably_damaging(0.999) TCGA-W3-AA1R-06 17 9578224 9578224 C T USP43 Missense_Mutation p.P253S 0.76 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1R-06 17 9596523 9596523 C T USP43 Missense_Mutation p.P478L 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 18 14542966 14542966 C T POTEC Silent p.K60K 0.12 TCGA-W3-AA1R-06 18 19780808 19780808 G A GATA6 3'UTR 0.40 TCGA-W3-AA1R-06 18 21395509 21395509 G A LAMA3 Silent p.L673L 0.48 TCGA-W3-AA1R-06 18 21519342 21519342 G A LAMA3 Silent p.L3006L 0.28 TCGA-W3-AA1R-06 18 28609497 28609497 G A DSC3 Missense_Mutation p.P151L 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 18 29038558 29038558 T A DSG3 Missense_Mutation p.F123I 0.43 deleterious(0) probably_damaging(0.932) TCGA-W3-AA1R-06 18 29797877 29797877 G A MEP1B Silent p.K680K 0.36 TCGA-W3-AA1R-06 18 30267196 30267196 C T KLHL14 Missense_Mutation p.G387E 0.34 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 18 32822377 32822382 CCTTCG TCTCT ZNF397 5'UTR 0.16 TCGA-W3-AA1R-06 18 32825301 32825301 C T ZNF397 Missense_Mutation p.S211L 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-W3-AA1R-06 18 34340689 34340689 C T FHOD3 Missense_Mutation p.S1340F 0.41 deleterious(0.03) benign(0.138) TCGA-W3-AA1R-06 18 346446 346446 G A COLEC12 Silent p.I392I 0.50 TCGA-W3-AA1R-06 18 34801991 34801991 C T KIAA1328 Missense_Mutation p.S512F 0.50 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1R-06 18 40323648 40323648 T A RIT2 Missense_Mutation p.Y155F 0.57 tolerated(1) benign(0.013) TCGA-W3-AA1R-06 18 42532955 42532955 C T SETBP1 Missense_Mutation p.A1217V 0.60 tolerated(0.4) benign(0.002) TCGA-W3-AA1R-06 18 44560437 44560437 C T TCEB3B Missense_Mutation p.G400E 0.42 tolerated(0.07) benign(0.319) TCGA-W3-AA1R-06 18 47810323 47810323 G T CXXC1 Missense_Mutation p.H456N 0.43 deleterious(0.03) probably_damaging(0.969) TCGA-W3-AA1R-06 18 50985602 50985602 G A DCC Silent p.K1131K 0.48 TCGA-W3-AA1R-06 18 52544862 52544862 G A RAB27B Missense_Mutation p.G16R 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 18 52609992 52609992 G A CCDC68 Missense_Mutation p.P11S 0.41 tolerated(0.52) benign(0.026) TCGA-W3-AA1R-06 18 55027305 55027305 G A ST8SIA3 Missense_Mutation p.E314K 0.40 benign(0.023) TCGA-W3-AA1R-06 18 56063446 56063446 G A NEDD4L Missense_Mutation p.R958Q 0.32 tolerated(0.09) probably_damaging(0.991) TCGA-W3-AA1R-06 18 56205164 56205164 G A ALPK2 Missense_Mutation p.S752F 0.37 tolerated(0.71) benign(0.015) TCGA-W3-AA1R-06 18 580595 580595 G A CETN1 Missense_Mutation p.E63K 0.36 deleterious(0) probably_damaging(0.932) TCGA-W3-AA1R-06 18 59166674 59166674 G A CDH20 Missense_Mutation p.G168R 0.30 deleterious(0) possibly_damaging(0.829) TCGA-W3-AA1R-06 18 59221716 59221716 G A CDH20 Missense_Mutation p.E732K 0.57 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 18 60021722 60021722 C T TNFRSF11A Missense_Mutation p.R128C 0.50 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1R-06 18 60645570 60645570 C T PHLPP1 Missense_Mutation p.R1354C 0.53 tolerated(0.18) benign(0.273) TCGA-W3-AA1R-06 18 61305019 61305019 G A SERPINB4 Silent p.F369F 0.32 TCGA-W3-AA1R-06 18 61305131 61305131 G A SERPINB4 Missense_Mutation p.A332V 0.34 deleterious(0) possibly_damaging(0.483) TCGA-W3-AA1R-06 18 61324504 61324504 C T SERPINB3 Silent p.K204K 0.44 TCGA-W3-AA1R-06 18 61328048 61328048 C T SERPINB3 Missense_Mutation p.A70T 0.33 tolerated(0.67) benign(0.05) TCGA-W3-AA1R-06 18 61379925 61379925 C T SERPINB11 Nonsense_Mutation p.Q119* 0.39 TCGA-W3-AA1R-06 18 61569055 61569055 G A SERPINB2 Missense_Mutation p.G206E 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 18 61582737 61582737 T C SERPINB10 Intron 0.45 TCGA-W3-AA1R-06 18 64235902 64235902 G A CDH19 Missense_Mutation p.L81F 0.40 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1R-06 18 66564501 66564501 G A CCDC102B Missense_Mutation p.E367K 0.37 tolerated(0.05) possibly_damaging(0.839) TCGA-W3-AA1R-06 18 67231752 67231752 G A DOK6 Silent p.K32K 0.45 TCGA-W3-AA1R-06 18 67760005 67760005 A C RTTN Missense_Mutation p.N1313K 0.44 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1R-06 18 683282 683282 G A ENOSF1 Silent p.S301S 0.47 TCGA-W3-AA1R-06 18 74154761 74154761 G C ZNF516 Missense_Mutation p.H84D 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 19 10081684 10081684 C T COL5A3 Silent p.G1283G 0.62 TCGA-W3-AA1R-06 19 10610338 10610338 G A KEAP1 Silent p.S124S 0.80 TCGA-W3-AA1R-06 19 12089114 12089114 C T ZNF763 Silent p.I128I 0.71 TCGA-W3-AA1R-06 19 12090619 12090619 G A ZNF763 3'UTR 0.67 TCGA-W3-AA1R-06 19 12981982 12981982 G A MAST1 Missense_Mutation p.E1087K 0.70 deleterious(0) benign(0.108) TCGA-W3-AA1R-06 19 13991393 13991393 C T NANOS3 3'Flank 0.71 TCGA-W3-AA1R-06 19 14003693 14003693 C G C19orf57 Missense_Mutation p.G100A 0.69 tolerated(0.14) benign(0.006) TCGA-W3-AA1R-06 19 15651508 15651508 G A CYP4F22 Missense_Mutation p.D307N 0.81 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 19 15807845 15807845 G A CYP4F12 Missense_Mutation p.E509K 0.61 tolerated(0.13) benign(0.202) TCGA-W3-AA1R-06 19 16197329 16197329 G A TPM4 Silent p.E157E 0.58 TCGA-W3-AA1R-06 19 16601229 16601229 C T CALR3 Missense_Mutation p.D116N 0.70 tolerated(0.19) possibly_damaging(0.876) TCGA-W3-AA1R-06 19 16923598 16923598 G A NWD1 Intron 0.68 TCGA-W3-AA1R-06 19 17476584 17476584 C T PLVAP Silent p.K230K 0.68 TCGA-W3-AA1R-06 19 17750706 17750706 G A UNC13A Silent p.F933F 0.61 TCGA-W3-AA1R-06 19 19231810 19231810 G A TMEM161A Silent p.I360I 0.54 TCGA-W3-AA1R-06 19 19387372 19387372 G A SUGP1 3'UTR 0.67 TCGA-W3-AA1R-06 19 19656613 19656613 G A CILP2 Missense_Mutation p.G1087S 0.67 tolerated(0.05) probably_damaging(1) TCGA-W3-AA1R-06 19 2207604 2207604 C T DOT1L Silent p.L296L 0.65 TCGA-W3-AA1R-06 19 22154204 22154204 G A ZNF208 Missense_Mutation p.T1211I 0.83 tolerated(0.24) benign(0.045) TCGA-W3-AA1R-06 19 22270838 22270838 C T ZNF257 Nonsense_Mutation p.Q96* 0.65 TCGA-W3-AA1R-06 19 22363528 22363528 G A ZNF676 Missense_Mutation p.H331Y 0.41 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1R-06 19 22363533 22363533 C T ZNF676 Missense_Mutation p.R329K 0.44 tolerated(0.36) benign(0.001) TCGA-W3-AA1R-06 19 22364341 22364341 C T ZNF676 Missense_Mutation p.E60K 0.74 tolerated(1) possibly_damaging(0.899) TCGA-W3-AA1R-06 19 22939793 22939793 C T ZNF99 3'Flank 0.80 TCGA-W3-AA1R-06 19 22942255 22942255 T A ZNF99 Missense_Mutation p.K152N 0.44 tolerated(0.11) benign(0.271) TCGA-W3-AA1R-06 19 23329266 23329266 C T ZNF730 Missense_Mutation p.H474Y 0.35 deleterious(0.02) possibly_damaging(0.849) TCGA-W3-AA1R-06 19 2717167 2717167 G A DIRAS1 3'UTR 0.68 TCGA-W3-AA1R-06 19 2933905 2933905 G A ZNF77 Missense_Mutation p.P407L 0.74 deleterious(0.04) benign(0.033) TCGA-W3-AA1R-06 19 32930792 32930792 C T DPY19L3 Silent p.S277S 0.44 TCGA-W3-AA1R-06 19 33444523 33444523 G A CEP89 Nonsense_Mutation p.Q164* 0.04 TCGA-W3-AA1R-06 19 33706791 33706791 G A SLC7A10 Silent p.V80V 0.53 TCGA-W3-AA1R-06 19 35512502 35512502 C T GRAMD1A Silent p.H524H 0.37 TCGA-W3-AA1R-06 19 35822938 35822938 G A CD22 5'UTR 0.42 TCGA-W3-AA1R-06 19 35849795 35849795 G A FFAR3 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.01) benign(0.051) TCGA-W3-AA1R-06 19 36004264 36004264 G A DMKN Silent p.A38A 0.41 TCGA-W3-AA1R-06 19 36018940 36018940 C T SBSN Missense_Mutation p.E82K 0.36 deleterious(0) possibly_damaging(0.89) TCGA-W3-AA1R-06 19 36109331 36109331 C T HAUS5 Silent p.S283S 0.38 TCGA-W3-AA1R-06 19 36278452 36278452 C T ARHGAP33 Silent p.G834G 0.60 TCGA-W3-AA1R-06 19 36398384 36398384 C T TYROBP Missense_Mutation p.G65S 0.37 tolerated(0.09) probably_damaging(0.99) TCGA-W3-AA1R-06 19 36398385 36398385 C T TYROBP Silent p.L64L 0.37 TCGA-W3-AA1R-06 19 37117137 37117137 G A ZNF382 Missense_Mutation p.R113K 0.26 tolerated(0.43) benign(0.001) TCGA-W3-AA1R-06 19 37383135 37383135 A T ZNF829 Silent p.S267S 0.33 TCGA-W3-AA1R-06 19 37643257 37643257 A G ZNF585A Missense_Mutation p.I460T 0.45 tolerated(0.28) benign(0.122) TCGA-W3-AA1R-06 19 38314522 38314522 G A CTD-2554C21.2 RNA 0.75 TCGA-W3-AA1R-06 19 38948780 38948780 C T RYR1 Missense_Mutation p.P672L 0.28 probably_damaging(0.926) TCGA-W3-AA1R-06 19 38956854 38956854 C T RYR1 Silent p.D998D 0.27 TCGA-W3-AA1R-06 19 39062874 39062874 G A RYR1 Silent p.V4654V 0.33 TCGA-W3-AA1R-06 19 3959143 3959143 G A DAPK3 Silent p.L441L 0.75 TCGA-W3-AA1R-06 19 39804707 39804707 C T LRFN1 Missense_Mutation p.A424T 0.33 tolerated(0.59) benign(0.065) TCGA-W3-AA1R-06 19 39804708 39804708 C T LRFN1 Silent p.A423A 0.35 TCGA-W3-AA1R-06 19 39826118 39826118 C T GMFG Silent p.R19R 0.44 TCGA-W3-AA1R-06 19 39913647 39913647 C T PLEKHG2 Silent p.P651P 0.38 TCGA-W3-AA1R-06 19 40412135 40412135 C T FCGBP Missense_Mutation p.E1165K 0.40 possibly_damaging(0.771) TCGA-W3-AA1R-06 19 40421343 40421343 G A FCGBP Missense_Mutation p.R860C 0.31 probably_damaging(0.917) TCGA-W3-AA1R-06 19 40520228 40520228 C T ZNF546 Missense_Mutation p.H351Y 0.33 deleterious(0.01) benign(0.365) TCGA-W3-AA1R-06 19 40710446 40710446 C T MAP3K10 Silent p.I306I 0.46 TCGA-W3-AA1R-06 19 41092689 41092689 G A SHKBP1 Missense_Mutation p.G392E 0.40 deleterious(0.03) possibly_damaging(0.847) TCGA-W3-AA1R-06 19 41117279 41117279 G A LTBP4 Missense_Mutation p.G745R 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1R-06 19 41135394 41135394 G A LTBP4 Missense_Mutation p.R1604H 0.42 tolerated(0.39) possibly_damaging(0.817) TCGA-W3-AA1R-06 19 4171737 4171737 C T CREB3L3 Missense_Mutation p.P386L 0.74 tolerated(0.06) benign(0.298) TCGA-W3-AA1R-06 19 41825576 41825576 C T CCDC97 Silent p.A200A 0.49 TCGA-W3-AA1R-06 19 41825577 41825577 C T CCDC97 Missense_Mutation p.R201C 0.48 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1R-06 19 42880471 42880471 C T MEGF8 Silent p.S2627S 0.48 TCGA-W3-AA1R-06 19 43689223 43689223 C T PSG5 Silent p.E47E 0.77 TCGA-W3-AA1R-06 19 44732682 44732682 C T ZNF227 Silent p.Y48Y 0.47 TCGA-W3-AA1R-06 19 4538270 4538270 G A LRG1 Silent p.F242F 0.67 TCGA-W3-AA1R-06 19 45889129 45889129 G A PPP1R13L Silent p.F678F 0.45 TCGA-W3-AA1R-06 19 46268941 46268941 C T SIX5 Missense_Mutation p.E680K 0.43 tolerated(0.06) benign(0.076) TCGA-W3-AA1R-06 19 46998277 46998277 G A PNMAL2 Missense_Mutation p.S149L 0.37 tolerated(0.4) benign(0.011) TCGA-W3-AA1R-06 19 47234073 47234073 G A STRN4 Silent p.I265I 0.34 TCGA-W3-AA1R-06 19 47548466 47548466 G A NPAS1 Missense_Mutation p.E444K 0.30 tolerated(0.09) benign(0.004) TCGA-W3-AA1R-06 19 47653465 47653465 C T SAE1 Missense_Mutation p.P73S 0.27 tolerated(0.3) benign(0.002) TCGA-W3-AA1R-06 19 48925121 48925121 G A GRIN2D Missense_Mutation p.S724N 0.44 tolerated(0.28) benign(0.117) TCGA-W3-AA1R-06 19 49377346 49377346 C T PPP1R15A Missense_Mutation p.P286S 0.45 tolerated(0.06) probably_damaging(0.968) TCGA-W3-AA1R-06 19 49377347 49377347 C T PPP1R15A Missense_Mutation p.P286L 0.44 deleterious(0.04) probably_damaging(0.981) TCGA-W3-AA1R-06 19 49484881 49484881 C T GYS1 Missense_Mutation p.E359K 0.29 tolerated(0.54) benign(0.094) TCGA-W3-AA1R-06 19 49536385 49536385 C T CGB2 Silent p.F133F 0.51 TCGA-W3-AA1R-06 19 49639148 49639148 C T PPFIA3 Missense_Mutation p.R545C 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1R-06 19 50180558 50180558 G A PRMT1 Silent p.A7A 0.39 TCGA-W3-AA1R-06 19 50462713 50462713 G A SIGLEC11 Silent p.L321L 0.38 TCGA-W3-AA1R-06 19 50750373 50750373 G A MYH14 Silent p.K441K 0.32 TCGA-W3-AA1R-06 19 50946860 50946860 G A MYBPC2 Missense_Mutation p.E338K 0.42 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 19 51021625 51021625 C T LRRC4B Missense_Mutation p.A449T 0.45 tolerated(0.15) possibly_damaging(0.7) TCGA-W3-AA1R-06 19 51362950 51362950 C T KLK3 Intron 0.42 TCGA-W3-AA1R-06 19 51362951 51362951 C T KLK3 Intron 0.42 TCGA-W3-AA1R-06 19 5144825 5144825 C T KDM4B Missense_Mutation p.S978F 0.87 benign(0.002) TCGA-W3-AA1R-06 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.45 tolerated(0.21) benign(0.065) TCGA-W3-AA1R-06 19 51471378 51471378 G A KLK6 Intron 0.50 TCGA-W3-AA1R-06 19 51506443 51506443 G A KLK9 Missense_Mutation p.S226F 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 19 51509975 51509975 G A KLK9 Silent p.L69L 0.44 TCGA-W3-AA1R-06 19 5222200 5222200 G A PTPRS Silent p.I1045I 0.70 TCGA-W3-AA1R-06 19 52249600 52249600 G A FPR1 Silent p.I216I 0.39 TCGA-W3-AA1R-06 19 52272265 52272265 C T FPR2 Silent p.F118F 0.44 TCGA-W3-AA1R-06 19 52505073 52505073 G A ZNF615 Silent p.I77I 0.42 TCGA-W3-AA1R-06 19 53740217 53740217 C T ZNF677 3'UTR 0.07 TCGA-W3-AA1R-06 19 53884501 53884501 C T ZNF525 Silent p.A223A 0.36 TCGA-W3-AA1R-06 19 54169988 54169988 C T MIR512-1 RNA 0.33 TCGA-W3-AA1R-06 19 54194214 54194214 T C MIR520A RNA 0.34 TCGA-W3-AA1R-06 19 54301630 54301630 C T NLRP12 Missense_Mutation p.G932S 0.18 tolerated(0.33) benign(0.001) TCGA-W3-AA1R-06 19 54844854 54844854 C T LILRA4 Missense_Mutation p.E497K 0.40 deleterious_low_confidence(0.04) benign(0.008) TCGA-W3-AA1R-06 19 54848701 54848701 G A LILRA4 Missense_Mutation p.P308S 0.44 tolerated(0.16) probably_damaging(0.998) TCGA-W3-AA1R-06 19 55085931 55085931 G A LILRA2 Silent p.K78K 0.30 TCGA-W3-AA1R-06 19 55106623 55106623 G A LILRA1 Silent p.G139G 0.43 TCGA-W3-AA1R-06 19 55378128 55378128 G A KIR3DL2 Missense_Mutation p.R437K 0.38 deleterious(0.02) probably_damaging(0.93) TCGA-W3-AA1R-06 19 55686540 55686540 C T SYT5 Silent p.E236E 0.42 TCGA-W3-AA1R-06 19 55697876 55697876 G A PTPRH Missense_Mutation p.H867Y 0.49 possibly_damaging(0.803) TCGA-W3-AA1R-06 19 56228155 56228155 C T NLRP9 Missense_Mutation p.E757K 0.36 tolerated(0.58) benign(0.022) TCGA-W3-AA1R-06 19 56244695 56244695 C T NLRP9 Missense_Mutation p.D168N 0.42 deleterious(0) possibly_damaging(0.762) TCGA-W3-AA1R-06 19 56320563 56320563 G A NLRP11 Silent p.I471I 0.37 TCGA-W3-AA1R-06 19 56329477 56329477 C T NLRP11 Missense_Mutation p.E22K 0.33 deleterious(0.01) possibly_damaging(0.877) TCGA-W3-AA1R-06 19 56369635 56369635 G A NLRP4 Silent p.T292T 0.47 TCGA-W3-AA1R-06 19 56369661 56369661 G A NLRP4 Missense_Mutation p.G301E 0.43 deleterious(0) probably_damaging(0.927) TCGA-W3-AA1R-06 19 56467159 56467159 G A NLRP8 Missense_Mutation p.V579M 0.33 tolerated(0.57) possibly_damaging(0.694) TCGA-W3-AA1R-06 19 56515242 56515242 G A NLRP5 Missense_Mutation p.E75K 0.40 deleterious(0.01) probably_damaging(0.947) TCGA-W3-AA1R-06 19 56515263 56515263 G A NLRP5 Missense_Mutation p.E82K 0.34 tolerated(0.28) benign(0.016) TCGA-W3-AA1R-06 19 56701716 56701716 G A ZSCAN5B Missense_Mutation p.S323F 0.37 tolerated(0.78) probably_damaging(0.981) TCGA-W3-AA1R-06 19 57646501 57646501 G A ZIM3 Nonsense_Mutation p.Q402* 0.39 TCGA-W3-AA1R-06 19 57649841 57649841 C T ZIM3 Silent p.V47V 0.35 TCGA-W3-AA1R-06 19 58152123 58152123 C T ZNF211 Missense_Mutation p.S155F 0.40 tolerated(0.06) benign(0.424) TCGA-W3-AA1R-06 19 58199033 58199033 C T ZNF551 Nonsense_Mutation p.R464* 0.36 TCGA-W3-AA1R-06 19 58579445 58579445 C T ZNF135 Silent p.F555F 0.54 TCGA-W3-AA1R-06 19 58846572 58846572 G A ZSCAN22 Splice_Site p.X135_splice 0.25 TCGA-W3-AA1R-06 19 58967502 58967502 C T ZNF324B Silent p.F397F 0.42 TCGA-W3-AA1R-06 19 58982984 58982984 C T ZNF324 Silent p.G375G 0.32 TCGA-W3-AA1R-06 19 58982985 58982985 C T ZNF324 Missense_Mutation p.R376C 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 19 6040081 6040081 G A RFX2 Silent p.I144I 0.70 TCGA-W3-AA1R-06 19 6534961 6534961 C T TNFSF9 Missense_Mutation p.H217Y 0.69 deleterious(0.03) possibly_damaging(0.631) TCGA-W3-AA1R-06 19 6829842 6829842 G A VAV1 Silent p.R437R 0.64 TCGA-W3-AA1R-06 19 7593790 7593790 C T MCOLN1 Silent p.I356I 0.65 TCGA-W3-AA1R-06 19 7805831 7805831 G A CD209 3'UTR 0.67 TCGA-W3-AA1R-06 19 9057898 9057898 C T MUC16 Missense_Mutation p.D9850N 0.58 unknown(0) TCGA-W3-AA1R-06 19 9068901 9068901 C T MUC16 Missense_Mutation p.G6182E 0.59 unknown(0) TCGA-W3-AA1R-06 19 9074500 9074500 G A MUC16 Nonsense_Mutation p.Q4316* 0.68 TCGA-W3-AA1R-06 19 9077007 9077007 C T MUC16 Missense_Mutation p.G3480E 0.73 unknown(0) TCGA-W3-AA1R-06 19 9088020 9088020 G A MUC16 Silent p.I1265I 0.70 TCGA-W3-AA1R-06 19 9088687 9088687 C T MUC16 Missense_Mutation p.G1043E 0.79 unknown(0) TCGA-W3-AA1R-06 19 9213150 9213150 C T OR7G2 Missense_Mutation p.G278E 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1R-06 19 9237222 9237222 G A OR7G3 Silent p.I135I 0.74 TCGA-W3-AA1R-06 19 9271050 9271050 C A ZNF317 Silent p.I243I 0.75 TCGA-W3-AA1R-06 19 9271051 9271051 C T ZNF317 Missense_Mutation p.H244Y 0.75 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1R-06 19 9324686 9324686 C T OR7D4 Silent p.V276V 0.62 TCGA-W3-AA1R-06 19 9325064 9325064 G A OR7D4 Silent p.F150F 0.76 TCGA-W3-AA1R-06 19 9325511 9325511 C T OR7D4 Translation_Start_Site p.M1? 0.61 deleterious(0.01) benign(0.055) TCGA-W3-AA1R-06 19 9362376 9362376 C T OR7E24 Silent p.F219F 0.75 TCGA-W3-AA1R-06 19 9578279 9578279 A G ZNF560 Silent p.F448F 0.74 TCGA-W3-AA1R-06 19 9801730 9801730 G A ZNF812 Missense_Mutation p.P150L 0.65 deleterious(0.01) benign(0.219) TCGA-W3-AA1R-06 1 100154408 100154408 C T PALMD Missense_Mutation p.P198S 0.39 tolerated(0.1) probably_damaging(1) TCGA-W3-AA1R-06 1 101196981 101196981 G A VCAM1 Missense_Mutation p.G478R 0.44 deleterious(0.02) possibly_damaging(0.711) TCGA-W3-AA1R-06 1 101198219 101198219 G A VCAM1 Missense_Mutation p.E591K 0.42 tolerated(0.19) benign(0.031) TCGA-W3-AA1R-06 1 10166502 10166502 C T UBE4B Missense_Mutation p.P353S 0.41 tolerated_low_confidence(0.71) possibly_damaging(0.641) TCGA-W3-AA1R-06 1 10355782 10355782 G A KIF1B Missense_Mutation p.E533K 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-W3-AA1R-06 1 10408760 10408760 C T KIF1B Silent p.L1260L 0.59 TCGA-W3-AA1R-06 1 104203036 104203036 G A AMY1A Silent p.V311V 0.20 TCGA-W3-AA1R-06 1 104233971 104233971 C T AMY1B Missense_Mutation p.G349E 0.46 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 1 109394877 109394877 G A AKNAD1 Missense_Mutation p.S137L 0.77 tolerated(0.17) possibly_damaging(0.643) TCGA-W3-AA1R-06 1 110293371 110293371 G A EPS8L3 Missense_Mutation p.R562C 0.64 deleterious(0.01) possibly_damaging(0.685) TCGA-W3-AA1R-06 1 111730244 111730244 C T DENND2D Missense_Mutation p.E467K 0.52 tolerated_low_confidence(0.06) unknown(0) TCGA-W3-AA1R-06 1 111783978 111783978 C T CHI3L2 Silent p.I316I 0.66 TCGA-W3-AA1R-06 1 111862893 111862893 G A CHIA Silent p.G412G 0.30 TCGA-W3-AA1R-06 1 11346010 11346010 C T UBIAD1 Missense_Mutation p.T280I 0.34 deleterious(0) benign(0.016) TCGA-W3-AA1R-06 1 1139552 1139552 G A TNFRSF18 Intron 0.35 TCGA-W3-AA1R-06 1 114499420 114499420 C T HIPK1 Missense_Mutation p.P527S 0.65 deleterious(0) possibly_damaging(0.889) TCGA-W3-AA1R-06 1 1146954 1146954 G A TNFRSF4 Missense_Mutation p.S272F 0.28 tolerated(0.14) benign(0.067) TCGA-W3-AA1R-06 1 115165702 115165702 G A DENND2C Missense_Mutation p.P321L 0.64 tolerated(0.1) benign(0.076) TCGA-W3-AA1R-06 1 115466106 115466106 G C SYCP1 Missense_Mutation p.Q585H 0.92 deleterious(0.01) probably_damaging(0.933) TCGA-W3-AA1R-06 1 1164028 1164028 G A SDF4 Missense_Mutation p.A49V 0.34 tolerated(0.26) benign(0.001) TCGA-W3-AA1R-06 1 11918960 11918960 G A NPPB 5'UTR 0.33 TCGA-W3-AA1R-06 1 119936540 119936540 G A HAO2 3'UTR 0.76 TCGA-W3-AA1R-06 1 1262786 1262786 C T GLTPD1 Silent p.R96R 0.57 TCGA-W3-AA1R-06 1 12704613 12704613 C T AADACL4 Silent p.F16F 0.39 TCGA-W3-AA1R-06 1 12779674 12779674 G A AADACL3 Silent p.G65G 0.34 TCGA-W3-AA1R-06 1 12908029 12908029 G A HNRNPCL1 Silent p.S38S 0.12 TCGA-W3-AA1R-06 1 12918952 12918952 G A PRAMEF2 Missense_Mutation p.E30K 0.38 tolerated(0.18) probably_damaging(0.941) TCGA-W3-AA1R-06 1 12939538 12939538 A C PRAMEF4 Missense_Mutation p.Y422D 0.38 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 1 12939539 12939539 A C PRAMEF4 Missense_Mutation p.S421R 0.39 deleterious(0.01) possibly_damaging(0.812) TCGA-W3-AA1R-06 1 13036609 13036609 C T PRAMEF22 Silent p.S227S 0.23 TCGA-W3-AA1R-06 1 144874014 144874014 G A PDE4DIP Missense_Mutation p.S1648L 0.64 tolerated(0.16) benign(0.014) TCGA-W3-AA1R-06 1 144952150 144952150 C T PDE4DIP Intron 0.35 TCGA-W3-AA1R-06 1 144952188 144952188 C T PDE4DIP Intron 0.30 TCGA-W3-AA1R-06 1 150679197 150679197 C T HORMAD1 Silent p.V212V 0.87 TCGA-W3-AA1R-06 1 150933335 150933335 G A SETDB1 Missense_Mutation p.G933S 0.89 tolerated(0.1) probably_damaging(1) TCGA-W3-AA1R-06 1 151162535 151162535 C A VPS72 Missense_Mutation p.L21F 0.88 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1R-06 1 152975877 152975877 G A SPRR3 Silent p.E127E 0.88 TCGA-W3-AA1R-06 1 153430247 153430250 CCTG TCT S100A7 3'UTR 0.46 TCGA-W3-AA1R-06 1 155018850 155018850 G A DCST1 Silent p.L461L 0.86 TCGA-W3-AA1R-06 1 156235625 156235625 G A SMG5 Missense_Mutation p.S601L 0.84 tolerated(0.33) benign(0.001) TCGA-W3-AA1R-06 1 157773735 157773735 G A FCRL1 Silent p.I73I 0.84 TCGA-W3-AA1R-06 1 15813790 15813790 G A CELA2B Missense_Mutation p.G217D 0.44 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 1 158325349 158325349 G A CD1E Silent p.L205L 0.93 TCGA-W3-AA1R-06 1 158548997 158548997 G A OR10X1 Silent p.I231I 0.86 TCGA-W3-AA1R-06 1 158577166 158577166 G A OR10Z1 Missense_Mutation p.G313E 0.87 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1R-06 1 158617406 158617406 G A SPTA1 Silent p.D1273D 0.88 TCGA-W3-AA1R-06 1 159277696 159277696 C T FCER1A Missense_Mutation p.P250S 0.84 tolerated(0.15) unknown(0) TCGA-W3-AA1R-06 1 159284129 159284129 G A OR10J3 Silent p.T107T 0.87 TCGA-W3-AA1R-06 1 159846449 159846449 C T CCDC19 Missense_Mutation p.E417K 0.80 deleterious(0.04) possibly_damaging(0.84) TCGA-W3-AA1R-06 1 160137159 160137159 C T ATP1A4 Missense_Mutation p.P483L 0.83 tolerated(0.05) possibly_damaging(0.839) TCGA-W3-AA1R-06 1 160519710 160519710 A T CD84 Missense_Mutation p.D323E 0.87 tolerated(0.47) benign(0.022) TCGA-W3-AA1R-06 1 16054768 16054768 C T PLEKHM2 Missense_Mutation p.R613W 0.58 deleterious(0) possibly_damaging(0.656) TCGA-W3-AA1R-06 1 160651147 160651147 T A CD48 Missense_Mutation p.Y166F 0.92 tolerated(0.06) benign(0.395) TCGA-W3-AA1R-06 1 161049655 161049655 C T PVRL4 Missense_Mutation p.R55Q 0.89 tolerated(0.48) benign(0.183) TCGA-W3-AA1R-06 1 16262674 16262674 C T SPEN Silent p.T3313T 0.30 TCGA-W3-AA1R-06 1 166896327 166896327 G A ILDR2 Missense_Mutation p.P324L 0.87 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 1 166904596 166904596 C T ILDR2 Missense_Mutation p.M274I 0.87 tolerated(0.14) benign(0.075) TCGA-W3-AA1R-06 1 167042665 167042665 C T GPA33 Missense_Mutation p.R52Q 0.93 tolerated(0.08) benign(0.231) TCGA-W3-AA1R-06 1 167095086 167095086 C T DUSP27 Silent p.L240L 0.90 TCGA-W3-AA1R-06 1 167404544 167404544 C T CD247 Intron 0.80 TCGA-W3-AA1R-06 1 167815048 167815048 C T ADCY10 Silent p.V920V 0.83 TCGA-W3-AA1R-06 1 168344836 168344836 G A MIR557 RNA 0.86 TCGA-W3-AA1R-06 1 16892178 16892178 G A NBPF1 Missense_Mutation p.S1005F 0.03 deleterious(0.03) benign(0.109) TCGA-W3-AA1R-06 1 169519975 169519975 G A F5 Silent p.I433I 0.75 TCGA-W3-AA1R-06 1 170928700 170928700 G A MROH9 Missense_Mutation p.E84K 0.81 tolerated(0.22) benign(0.039) TCGA-W3-AA1R-06 1 172011268 172011268 C T DNM3 Missense_Mutation p.P371L 0.88 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1R-06 1 17266531 17266531 A C CROCC Missense_Mutation p.H584P 0.11 possibly_damaging(0.526) TCGA-W3-AA1R-06 1 17266532 17266532 C T CROCC Silent p.H584H 0.11 TCGA-W3-AA1R-06 1 17297155 17297155 C T CROCC Missense_Mutation p.H1893Y 0.36 benign(0.291) TCGA-W3-AA1R-06 1 173551074 173551074 G A SLC9C2 Silent p.I238I 0.89 TCGA-W3-AA1R-06 1 175067599 175067599 G A TNN Missense_Mutation p.E663K 0.88 tolerated(0.06) probably_damaging(0.933) TCGA-W3-AA1R-06 1 17550905 17550905 G A PADI1 Silent p.K130K 0.23 TCGA-W3-AA1R-06 1 177930761 177930761 G A SEC16B Missense_Mutation p.P251S 0.87 tolerated(0.12) benign(0.099) TCGA-W3-AA1R-06 1 179631333 179631333 G A TDRD5 Missense_Mutation p.G806E 0.84 tolerated(0.21) benign(0.024) TCGA-W3-AA1R-06 1 180006096 180006096 C T CEP350 Missense_Mutation p.R1328C 0.79 probably_damaging(0.999) TCGA-W3-AA1R-06 1 180165596 180165596 G A QSOX1 Silent p.Q556Q 0.85 TCGA-W3-AA1R-06 1 181701813 181701813 C T CACNA1E Missense_Mutation p.S864F 0.81 deleterious(0.04) benign(0.006) TCGA-W3-AA1R-06 1 182909474 182909474 C T SHCBP1L Missense_Mutation p.E254K 0.89 deleterious(0) possibly_damaging(0.779) TCGA-W3-AA1R-06 1 184764533 184764533 G A FAM129A Missense_Mutation p.P789S 0.88 deleterious_low_confidence(0.04) benign(0.099) TCGA-W3-AA1R-06 1 185191035 185191035 G A SWT1 Missense_Mutation p.E726K 0.89 deleterious(0.02) benign(0.085) TCGA-W3-AA1R-06 1 186647530 186647530 G A PTGS2 Missense_Mutation p.S107L 0.82 deleterious(0.03) benign(0.289) TCGA-W3-AA1R-06 1 18692020 18692020 G A IGSF21 Missense_Mutation p.E282K 0.37 deleterious(0.04) benign(0.175) TCGA-W3-AA1R-06 1 18807625 18807625 G A KLHDC7A Silent p.G50G 0.32 TCGA-W3-AA1R-06 1 18808185 18808185 G T KLHDC7A Missense_Mutation p.G237V 0.44 deleterious(0.01) possibly_damaging(0.643) TCGA-W3-AA1R-06 1 19186036 19186036 G A TAS1R2 Missense_Mutation p.S40F 0.37 deleterious(0.01) possibly_damaging(0.486) TCGA-W3-AA1R-06 1 192150534 192150534 C T RGS18 Silent p.H132H 0.84 TCGA-W3-AA1R-06 1 19468161 19468161 G A UBR4 Missense_Mutation p.H2764Y 0.37 possibly_damaging(0.854) TCGA-W3-AA1R-06 1 1961550 1961550 G A GABRD Silent p.V396V 0.49 TCGA-W3-AA1R-06 1 196881924 196881924 C T CFHR4 Missense_Mutation p.S350F 0.90 tolerated(0.1) possibly_damaging(0.485) TCGA-W3-AA1R-06 1 196928089 196928089 C A CFHR2 Nonsense_Mutation p.S231* 0.94 TCGA-W3-AA1R-06 1 197297803 197297803 G A CRB1 Missense_Mutation p.E108K 0.80 tolerated(0.08) possibly_damaging(0.67) TCGA-W3-AA1R-06 1 198492610 198492610 T C ATP6V1G3 Missense_Mutation p.K90E 0.85 tolerated(0.31) benign(0.004) TCGA-W3-AA1R-06 1 201009022 201009022 G A CACNA1S Silent p.S1853S 0.83 TCGA-W3-AA1R-06 1 201028322 201028322 C T CACNA1S Missense_Mutation p.A1174T 0.89 tolerated(0.08) possibly_damaging(0.555) TCGA-W3-AA1R-06 1 201187657 201187657 G A IGFN1 Splice_Site p.X3257_splice 0.88 TCGA-W3-AA1R-06 1 201292140 201292140 G A PKP1 Splice_Site p.X523_splice 0.86 TCGA-W3-AA1R-06 1 202931732 202931732 G A CYB5R1 Missense_Mutation p.P281S 0.88 deleterious(0) benign(0.429) TCGA-W3-AA1R-06 1 203018862 203018862 G A PPFIA4 5'Flank 0.76 TCGA-W3-AA1R-06 1 204394839 204394839 G A PIK3C2B Missense_Mutation p.P1540S 0.83 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 1 205031441 205031441 G A CNTN2 Intron 0.90 TCGA-W3-AA1R-06 1 207245681 207245681 C T PFKFB2 Missense_Mutation p.L495F 0.89 benign(0.001) TCGA-W3-AA1R-06 1 207782748 207782748 G A CR1 Missense_Mutation p.G2004R 0.93 tolerated(0.3) possibly_damaging(0.797) TCGA-W3-AA1R-06 1 208217869 208217869 G A PLXNA2 Silent p.A1286A 0.83 TCGA-W3-AA1R-06 1 21031202 21031202 G A KIF17 Silent p.Y287Y 0.44 TCGA-W3-AA1R-06 1 216138719 216138719 G A USH2A Missense_Mutation p.R2354C 0.87 possibly_damaging(0.582) TCGA-W3-AA1R-06 1 216595734 216595734 C T USH2A 5'UTR 0.81 TCGA-W3-AA1R-06 1 22140896 22140896 C T LDLRAD2 Silent p.L31L 0.25 TCGA-W3-AA1R-06 1 223285326 223285326 C T TLR5 Missense_Mutation p.E350K 0.88 deleterious(0) possibly_damaging(0.513) TCGA-W3-AA1R-06 1 224872533 224872533 C T CNIH3 Silent p.F62F 0.81 TCGA-W3-AA1R-06 1 226065234 226065234 G A TMEM63A Missense_Mutation p.S16F 0.83 tolerated(0.41) benign(0.002) TCGA-W3-AA1R-06 1 228486318 228486318 G A OBSCN Silent p.T4370T 0.88 TCGA-W3-AA1R-06 1 228509839 228509839 G A OBSCN Silent p.E6056E 0.88 TCGA-W3-AA1R-06 1 228612802 228612802 G A HIST3H3 Silent p.I75I 0.85 TCGA-W3-AA1R-06 1 22924178 22924178 G A EPHA8 Missense_Mutation p.G647E 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 22987489 22987489 C T C1QB Silent p.F124F 0.48 TCGA-W3-AA1R-06 1 230838917 230838917 G A AGT Silent p.G476G 0.87 TCGA-W3-AA1R-06 1 230841677 230841677 A G AGT Splice_Site p.X375_splice 0.85 TCGA-W3-AA1R-06 1 232943032 232943032 G A MAP10 Missense_Mutation p.V755I 0.89 tolerated(0.25) benign(0.014) TCGA-W3-AA1R-06 1 233398801 233398801 C T PCNXL2 Missense_Mutation p.G88R 0.88 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1R-06 1 23420118 23420118 C A LUZP1 Nonsense_Mutation p.E213* 0.08 TCGA-W3-AA1R-06 1 236306330 236306330 C T GPR137B Silent p.F136F 0.91 TCGA-W3-AA1R-06 1 237586544 237586544 C T RYR2 Missense_Mutation p.S334F 0.95 probably_damaging(0.969) TCGA-W3-AA1R-06 1 238053230 238053230 C T ZP4 Missense_Mutation p.G113S 0.89 deleterious(0.02) benign(0.041) TCGA-W3-AA1R-06 1 242159590 242159590 C T MAP1LC3C Missense_Mutation p.D107N 0.87 tolerated(0.13) benign(0.16) TCGA-W3-AA1R-06 1 246091248 246091248 G A SMYD3 Silent p.I229I 0.85 TCGA-W3-AA1R-06 1 24680922 24680922 C T GRHL3 Intron 0.50 TCGA-W3-AA1R-06 1 247835822 247835822 G A OR13G1 Silent p.F174F 0.90 TCGA-W3-AA1R-06 1 248616254 248616254 G A OR2T2 Missense_Mutation p.M52I 0.33 tolerated(0.56) benign(0) TCGA-W3-AA1R-06 1 248616599 248616599 C T OR2T2 Silent p.F167F 0.40 TCGA-W3-AA1R-06 1 248802062 248802062 G A OR2T35 Silent p.F166F 0.60 TCGA-W3-AA1R-06 1 2494641 2494641 C T TNFRSF14 Missense_Mutation p.P261S 0.30 tolerated(0.58) benign(0.074) TCGA-W3-AA1R-06 1 24995922 24995922 C T SRRM1 Missense_Mutation p.S683L 0.37 benign(0.194) TCGA-W3-AA1R-06 1 26079982 26079982 G A MAN1C1 Missense_Mutation p.R281Q 0.42 deleterious(0.02) possibly_damaging(0.905) TCGA-W3-AA1R-06 1 26301080 26301080 G A PAFAH2 Nonsense_Mutation p.R274* 0.37 TCGA-W3-AA1R-06 1 26310484 26310484 G A PAFAH2 Missense_Mutation p.R169C 0.43 deleterious(0) possibly_damaging(0.79) TCGA-W3-AA1R-06 1 28282535 28282535 G A SMPDL3B Missense_Mutation p.G316E 0.37 tolerated(0.09) probably_damaging(0.998) TCGA-W3-AA1R-06 1 28477346 28477346 C T PTAFR Missense_Mutation p.D63N 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 29018094 29018094 C T GMEB1 Intron 0.31 TCGA-W3-AA1R-06 1 2938666 2938666 C T ACTRT2 Missense_Mutation p.S139L 0.48 deleterious(0.01) benign(0.11) TCGA-W3-AA1R-06 1 29601964 29601964 C T PTPRU Silent p.P383P 0.48 TCGA-W3-AA1R-06 1 31901870 31901870 C T SERINC2 Missense_Mutation p.L285F 0.28 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1R-06 1 32087131 32087131 G A HCRTR1 Missense_Mutation p.A226T 0.43 tolerated(0.16) benign(0.166) TCGA-W3-AA1R-06 1 32198154 32198154 G A BAI2 Silent p.S1228S 0.52 TCGA-W3-AA1R-06 1 32202101 32202101 C A BAI2 Intron 0.40 TCGA-W3-AA1R-06 1 33999492 33999492 G A CSMD2 Missense_Mutation p.L3155F 0.35 tolerated(0.53) benign(0.001) TCGA-W3-AA1R-06 1 34128693 34128693 C T CSMD2 Splice_Site p.X1311_splice 0.40 TCGA-W3-AA1R-06 1 34164490 34164490 A G CSMD2 Missense_Mutation p.V1223A 0.42 deleterious(0) benign(0.013) TCGA-W3-AA1R-06 1 34174802 34174802 G A CSMD2 Missense_Mutation p.P1115S 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 34663075 34663075 C T C1orf94 Silent p.A190A 0.38 TCGA-W3-AA1R-06 1 36291561 36291561 C T AGO4 Silent p.I220I 0.40 TCGA-W3-AA1R-06 1 36935328 36935328 G A CSF3R Missense_Mutation p.P467S 0.34 tolerated(0.45) benign(0.013) TCGA-W3-AA1R-06 1 3756232 3756232 G A CEP104 Silent p.V225V 0.35 TCGA-W3-AA1R-06 1 38027265 38027265 G A DNALI1 Missense_Mutation p.E191K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1R-06 1 42914141 42914141 G A ZMYND12 Missense_Mutation p.L141F 0.33 deleterious(0.02) possibly_damaging(0.721) TCGA-W3-AA1R-06 1 42914142 42914142 G A ZMYND12 Silent p.S140S 0.31 TCGA-W3-AA1R-06 1 43119592 43119592 C T CCDC30 Missense_Mutation p.P749S 0.31 tolerated(0.8) benign(0.019) TCGA-W3-AA1R-06 1 43650859 43650859 C T WDR65 Silent p.S267S 0.38 TCGA-W3-AA1R-06 1 43870197 43870197 C T SZT2 Silent p.S158S 0.39 TCGA-W3-AA1R-06 1 44432417 44432417 C T IPO13 Missense_Mutation p.P829L 0.32 deleterious(0) possibly_damaging(0.594) TCGA-W3-AA1R-06 1 44441520 44441526 GGTAAGG - ATP6V0B Splice_Site p.X39_splice 0.39 TCGA-W3-AA1R-06 1 44463175 44463175 G A SLC6A9 3'Flank 0.52 TCGA-W3-AA1R-06 1 44878253 44878253 G A RNF220 Missense_Mutation p.E162K 0.39 deleterious(0.01) possibly_damaging(0.551) TCGA-W3-AA1R-06 1 45268999 45268999 C T PLK3 Silent p.P336P 0.40 TCGA-W3-AA1R-06 1 45486431 45486431 C T ZSWIM5 Missense_Mutation p.E827K 0.43 tolerated(0.15) unknown(0) TCGA-W3-AA1R-06 1 47348682 47348682 C T CYP4Z2P RNA 0.22 TCGA-W3-AA1R-06 1 47608973 47608973 C T CYP4A22 Silent p.S181S 0.40 TCGA-W3-AA1R-06 1 47611762 47611762 C T CYP4A22 Missense_Mutation p.S434F 0.30 tolerated(0.43) benign(0.019) TCGA-W3-AA1R-06 1 47685577 47685577 C T TAL1 Missense_Mutation p.G271R 0.57 tolerated(0.19) benign(0.001) TCGA-W3-AA1R-06 1 50666542 50666542 G A ELAVL4 Missense_Mutation p.D282N 0.48 tolerated(0.06) benign(0.249) TCGA-W3-AA1R-06 1 52289388 52289388 G A NRD1 Silent p.F437F 0.41 TCGA-W3-AA1R-06 1 52769577 52769577 C T ZFYVE9 Missense_Mutation p.P1140S 0.39 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 1 55118641 55118641 C T MROH7 Silent p.D14D 0.27 TCGA-W3-AA1R-06 1 57170068 57170068 G A PRKAA2 Missense_Mutation p.G405R 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 57170069 57170069 G A PRKAA2 Missense_Mutation p.G405E 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 57372362 57372362 G A C8A Silent p.T373T 0.42 TCGA-W3-AA1R-06 1 60366767 60366767 C T CYP2J2 Missense_Mutation p.M400I 0.31 tolerated(0.46) benign(0.004) TCGA-W3-AA1R-06 1 6194793 6194793 G A CHD5 Silent p.F999F 0.34 TCGA-W3-AA1R-06 1 62739321 62739321 C T KANK4 Silent p.Q485Q 0.33 TCGA-W3-AA1R-06 1 6634729 6634729 G A TAS1R1 Silent p.K179K 0.23 TCGA-W3-AA1R-06 1 6640892 6640892 C T ZBTB48 Missense_Mutation p.L75F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 1 67161133 67161133 C T SGIP1 Silent p.S529S 0.42 TCGA-W3-AA1R-06 1 75101972 75101972 G A C1orf173 Missense_Mutation p.P199S 0.40 tolerated(0.08) possibly_damaging(0.511) TCGA-W3-AA1R-06 1 75626521 75626521 C T LHX8 Missense_Mutation p.L338F 0.31 deleterious(0) benign(0.4) TCGA-W3-AA1R-06 1 75693440 75693440 A T SLC44A5 Missense_Mutation p.F319Y 0.30 deleterious(0.03) possibly_damaging(0.672) TCGA-W3-AA1R-06 1 77510113 77510113 G A ST6GALNAC5 Silent p.V162V 0.37 TCGA-W3-AA1R-06 1 78325722 78325722 C T FAM73A Intron 0.47 TCGA-W3-AA1R-06 1 79002262 79002262 G A PTGFR Missense_Mutation p.G324R 0.44 tolerated(0.11) probably_damaging(0.992) TCGA-W3-AA1R-06 1 79002352 79002352 G A PTGFR Missense_Mutation p.E354K 0.46 tolerated_low_confidence(0.46) benign(0.002) TCGA-W3-AA1R-06 1 82416090 82416090 A G LPHN2 Silent p.L472L 0.47 TCGA-W3-AA1R-06 1 82433784 82433784 C T LPHN2 Silent p.T791T 0.38 TCGA-W3-AA1R-06 1 84956008 84956008 G A RPF1 Missense_Mutation p.V157I 0.37 tolerated(0.4) benign(0.03) TCGA-W3-AA1R-06 1 85647940 85647940 C T SYDE2 Missense_Mutation p.M795I 0.27 tolerated(0.14) benign(0.014) TCGA-W3-AA1R-06 1 86894211 86894211 C T CLCA2 Silent p.F145F 0.43 TCGA-W3-AA1R-06 1 87043668 87043668 C T CLCA4 Missense_Mutation p.R679W 0.27 tolerated(0.26) benign(0.003) TCGA-W3-AA1R-06 1 9097825 9097825 G A SLC2A5 Silent p.F442F 0.37 TCGA-W3-AA1R-06 1 92979459 92979459 G A EVI5 Silent p.N729N 0.25 TCGA-W3-AA1R-06 1 94054811 94054811 G A BCAR3 Nonsense_Mutation p.Q218* 0.18 TCGA-W3-AA1R-06 1 9627413 9627413 C T SLC25A33 Missense_Mutation p.P103L 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 1 97250715 97250715 G A PTBP2 Missense_Mutation p.R270K 0.43 deleterious(0) probably_damaging(0.94) TCGA-W3-AA1R-06 1 980867 980867 C T AGRN Nonsense_Mutation p.R834* 0.33 TCGA-W3-AA1R-06 20 10030101 10030101 G A ANKEF1 Missense_Mutation p.G295D 0.40 deleterious(0.05) probably_damaging(1) TCGA-W3-AA1R-06 20 1143783 1143783 C T PSMF1 Silent p.P187P 0.24 TCGA-W3-AA1R-06 20 126340 126340 C T DEFB126 3'UTR 0.44 TCGA-W3-AA1R-06 20 13830946 13830946 C T SEL1L2 Missense_Mutation p.R500K 0.40 tolerated_low_confidence(0.18) benign(0.113) TCGA-W3-AA1R-06 20 15918171 15918171 G A MACROD2 Missense_Mutation p.E297K 0.38 tolerated_low_confidence(0.06) benign(0.423) TCGA-W3-AA1R-06 20 17950579 17950579 T G MGME1 Missense_Mutation p.V26G 0.45 tolerated(0.07) benign(0.007) TCGA-W3-AA1R-06 20 18541428 18541428 C T SEC23B 3'UTR 0.51 TCGA-W3-AA1R-06 20 20033099 20033099 G A CRNKL1 Missense_Mutation p.P124L 0.39 deleterious_low_confidence(0) benign(0) TCGA-W3-AA1R-06 20 20150063 20150063 C T C20orf26 Silent p.L448L 0.46 TCGA-W3-AA1R-06 20 20493333 20493333 G A RALGAPA2 Silent p.I1560I 0.49 TCGA-W3-AA1R-06 20 20616237 20616237 G A RALGAPA2 Missense_Mutation p.P277L 0.35 deleterious(0) possibly_damaging(0.474) TCGA-W3-AA1R-06 20 2298011 2298011 G A TGM3 Missense_Mutation p.G288E 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 20 23016658 23016658 C T SSTR4 Missense_Mutation p.P180S 0.41 deleterious(0.01) probably_damaging(0.954) TCGA-W3-AA1R-06 20 23017054 23017054 G A SSTR4 Missense_Mutation p.G312S 0.46 tolerated(0.05) probably_damaging(0.963) TCGA-W3-AA1R-06 20 29891209 29891209 G A DEFB116 Missense_Mutation p.P39S 0.20 tolerated(0.07) possibly_damaging(0.548) TCGA-W3-AA1R-06 20 30784839 30784839 G A PLAGL2 Missense_Mutation p.P303S 0.50 tolerated(0.4) benign(0.055) TCGA-W3-AA1R-06 20 31375140 31375140 G A DNMT3B Silent p.G179G 0.57 TCGA-W3-AA1R-06 20 31673901 31673901 G C BPIFB4 Missense_Mutation p.G286A 0.27 deleterious(0) probably_damaging(0.936) TCGA-W3-AA1R-06 20 33470623 33470623 T A ACSS2 Missense_Mutation p.F69I 0.29 tolerated(0.24) probably_damaging(0.999) TCGA-W3-AA1R-06 20 33879616 33879616 G A FAM83C Silent p.F164F 0.27 TCGA-W3-AA1R-06 20 34129792 34129792 G A ERGIC3 5'UTR 0.80 TCGA-W3-AA1R-06 20 34136576 34136576 C T ERGIC3 Missense_Mutation p.H215Y 0.37 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1R-06 20 36779353 36779353 C T TGM2 Nonsense_Mutation p.W180* 0.50 TCGA-W3-AA1R-06 20 36784331 36784331 G A TGM2 Silent p.L117L 0.44 TCGA-W3-AA1R-06 20 3682098 3682098 G A SIGLEC1 Silent p.S473S 0.43 TCGA-W3-AA1R-06 20 37555103 37555103 G A FAM83D Silent p.E36E 0.30 TCGA-W3-AA1R-06 20 37555104 37555104 G A FAM83D Missense_Mutation p.G37S 0.31 tolerated(0.4) benign(0.215) TCGA-W3-AA1R-06 20 37632482 37632482 A G DHX35 Missense_Mutation p.M315V 0.21 deleterious(0) possibly_damaging(0.542) TCGA-W3-AA1R-06 20 39831306 39831306 G A ZHX3 Missense_Mutation p.P751S 0.42 tolerated(0.07) benign(0.006) TCGA-W3-AA1R-06 20 39832338 39832338 G A ZHX3 Nonsense_Mutation p.Q407* 0.20 TCGA-W3-AA1R-06 20 40034090 40034090 C T CHD6 Missense_Mutation p.E2431K 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-W3-AA1R-06 20 40710585 40710585 G A PTPRT Silent p.I1403I 0.33 TCGA-W3-AA1R-06 20 40733247 40733247 G A PTPRT Missense_Mutation p.P1168S 0.25 tolerated(0.32) probably_damaging(0.996) TCGA-W3-AA1R-06 20 40790106 40790106 C T PTPRT Silent p.V856V 0.33 TCGA-W3-AA1R-06 20 42935326 42935326 G A FITM2 Missense_Mutation p.S243F 0.56 deleterious(0) possibly_damaging(0.894) TCGA-W3-AA1R-06 20 44003760 44003760 G A TP53TG5 Silent p.S229S 0.35 TCGA-W3-AA1R-06 20 44207884 44207884 C T WFDC8 Translation_Start_Site p.M1? 0.28 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1R-06 20 44259601 44259601 G A WFDC10A Missense_Mutation p.A62T 0.54 deleterious(0.03) probably_damaging(0.945) TCGA-W3-AA1R-06 20 44641079 44641079 C T MMP9 Silent p.F396F 0.56 TCGA-W3-AA1R-06 20 44676105 44676105 C T SLC12A5 Silent p.F623F 0.61 TCGA-W3-AA1R-06 20 46265061 46265061 C T NCOA3 Missense_Mutation p.S644L 0.56 deleterious(0.04) benign(0.084) TCGA-W3-AA1R-06 20 4680259 4680259 A G PRNP Silent p.G131G 0.31 TCGA-W3-AA1R-06 20 47591345 47591345 A G ARFGEF2 Missense_Mutation p.I570V 0.25 tolerated(0.16) benign(0.033) TCGA-W3-AA1R-06 20 47734476 47734476 G A STAU1 Silent p.A449A 0.52 TCGA-W3-AA1R-06 20 4843457 4843457 G A SLC23A2 Missense_Mutation p.P485S 0.41 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 20 49247352 49247352 C T FAM65C Silent p.G11G 0.59 TCGA-W3-AA1R-06 20 49621209 49621209 C T KCNG1 Silent p.L303L 0.62 TCGA-W3-AA1R-06 20 49626842 49626842 C T KCNG1 Missense_Mutation p.D12N 0.58 deleterious(0.01) possibly_damaging(0.683) TCGA-W3-AA1R-06 20 50408548 50408548 C T SALL4 Silent p.E158E 0.35 TCGA-W3-AA1R-06 20 50769820 50769820 G A ZFP64 Missense_Mutation p.S304L 0.26 tolerated(0.06) benign(0.015) TCGA-W3-AA1R-06 20 51872445 51872445 C T TSHZ2 Silent p.V816V 0.52 TCGA-W3-AA1R-06 20 55914050 55914050 G A SPO11 Missense_Mutation p.E284K 0.34 deleterious(0.01) possibly_damaging(0.831) TCGA-W3-AA1R-06 20 56735924 56735924 G C C20orf85 3'UTR 0.53 TCGA-W3-AA1R-06 20 57415165 57415165 G A RP4-806M20.3 5'Flank 0.45 TCGA-W3-AA1R-06 20 57561206 57561206 A G NELFCD Missense_Mutation p.H58R 0.59 tolerated(0.76) benign(0) TCGA-W3-AA1R-06 20 58349364 58349364 C T PHACTR3 Silent p.S331S 0.47 TCGA-W3-AA1R-06 20 6022671 6022671 G A LRRN4 Missense_Mutation p.S407F 0.47 deleterious(0) benign(0.367) TCGA-W3-AA1R-06 20 60904047 60904047 C T LAMA5 Missense_Mutation p.G1434R 0.62 benign(0.002) TCGA-W3-AA1R-06 20 61542591 61542591 G A DIDO1 Missense_Mutation p.P125L 0.55 benign(0.253) TCGA-W3-AA1R-06 20 61542643 61542643 C T DIDO1 Missense_Mutation p.E108K 0.21 probably_damaging(0.997) TCGA-W3-AA1R-06 20 61598568 61598568 G A SLC17A9 Intron 0.53 TCGA-W3-AA1R-06 20 62076703 62076703 G A KCNQ2 Silent p.I134I 0.61 TCGA-W3-AA1R-06 20 62078181 62078181 C G KCNQ2 Silent p.L102L 0.49 TCGA-W3-AA1R-06 20 62221422 62221422 G A GMEB2 3'UTR 0.33 TCGA-W3-AA1R-06 20 62374359 62374359 G A SLC2A4RG 3'UTR 0.90 TCGA-W3-AA1R-06 20 8689322 8689322 G A PLCB1 Silent p.V391V 0.33 TCGA-W3-AA1R-06 20 8698374 8698374 G A PLCB1 Silent p.V464V 0.39 TCGA-W3-AA1R-06 20 8714003 8714003 C T PLCB1 Silent p.I669I 0.36 TCGA-W3-AA1R-06 20 9352953 9352953 G A PLCB4 Missense_Mutation p.D197N 0.33 deleterious(0) probably_damaging(0.957) TCGA-W3-AA1R-06 20 9368194 9368194 C T PLCB4 Silent p.I383I 0.28 TCGA-W3-AA1R-06 20 9546606 9546606 C T PAK7 Silent p.G472G 0.41 TCGA-W3-AA1R-06 20 9561349 9561349 T A PAK7 Nonsense_Mutation p.K145* 0.32 TCGA-W3-AA1R-06 21 10906836 10906836 G A TPTE 3'UTR 0.24 TCGA-W3-AA1R-06 21 10914379 10914379 G A TPTE Missense_Mutation p.S447L 0.14 tolerated(0.06) benign(0.063) TCGA-W3-AA1R-06 21 10998232 10998232 C T TPTE RNA 0.15 TCGA-W3-AA1R-06 21 11039415 11039415 C T BAGE2 RNA 0.05 TCGA-W3-AA1R-06 21 19642348 19642348 G A TMPRSS15 Missense_Mutation p.R1000C 0.53 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1R-06 21 32638627 32638627 C T TIAM1 Missense_Mutation p.R221Q 0.62 tolerated_low_confidence(0.84) benign(0.001) TCGA-W3-AA1R-06 21 35821609 35821609 G A KCNE1 Silent p.V108V 0.87 TCGA-W3-AA1R-06 21 37833494 37833494 C T CLDN14 Missense_Mutation p.G167D 0.69 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1R-06 21 39755663 39755663 C A ERG Missense_Mutation p.A375S 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 21 43221489 43221489 G A PRDM15 Missense_Mutation p.P1479S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-W3-AA1R-06 21 43327234 43327234 G A C2CD2 Silent p.I395I 0.21 TCGA-W3-AA1R-06 21 43547854 43547854 G A UMODL1 Silent p.R1329R 0.76 TCGA-W3-AA1R-06 21 43704691 43704691 C T ABCG1 Silent p.C252C 0.79 TCGA-W3-AA1R-06 21 43867170 43867170 C T UBASH3A Missense_Mutation p.P618S 0.43 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 21 45483480 45483480 C T TRAPPC10 Silent p.L284L 0.38 TCGA-W3-AA1R-06 21 45710762 45710762 G A AIRE Intron 0.39 TCGA-W3-AA1R-06 21 45825911 45825911 G A TRPM2 Silent p.V927V 0.76 TCGA-W3-AA1R-06 21 45999656 45999656 G A KRTAP10-5 Missense_Mutation p.S267F 0.45 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 21 46689825 46689825 C T POFUT2 Missense_Mutation p.R314K 0.82 tolerated(1) benign(0.002) TCGA-W3-AA1R-06 21 47549061 47549061 C T COL6A2 Intron 0.67 TCGA-W3-AA1R-06 21 47549062 47549062 C T COL6A2 Intron 0.67 TCGA-W3-AA1R-06 21 47931521 47931521 A T DIP2A Missense_Mutation p.T366S 0.88 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1R-06 22 17982143 17982143 C T CECR2 Missense_Mutation p.S186F 0.44 deleterious(0.01) probably_damaging(0.946) TCGA-W3-AA1R-06 22 18383612 18383612 G A MICAL3 Silent p.A281A 0.36 TCGA-W3-AA1R-06 22 19865688 19865688 G A TXNRD2 Missense_Mutation p.P457L 0.27 deleterious(0.04) benign(0.104) TCGA-W3-AA1R-06 22 20457305 20457305 C T RIMBP3 Missense_Mutation p.E1333K 0.22 tolerated(0.27) benign(0.015) TCGA-W3-AA1R-06 22 22730622 22730622 C T IGLV5-45 Silent p.L39L 0.31 TCGA-W3-AA1R-06 22 22930959 22930959 G A IGLV2-33 Missense_Mutation p.D52N 0.46 tolerated_low_confidence(1) benign(0.001) TCGA-W3-AA1R-06 22 23114978 23114978 A G IGLV3-12 Missense_Mutation p.N84D 0.33 deleterious(0.04) possibly_damaging(0.844) TCGA-W3-AA1R-06 22 24580798 24580798 C T SUSD2 Silent p.I224I 0.44 TCGA-W3-AA1R-06 22 27021518 27021518 G A CRYBA4 Missense_Mutation p.D78N 0.42 deleterious(0.04) benign(0.197) TCGA-W3-AA1R-06 22 29182108 29182108 A G CCDC117 Missense_Mutation p.K212E 0.28 deleterious(0) possibly_damaging(0.801) TCGA-W3-AA1R-06 22 29445774 29445774 C T ZNRF3 Silent p.H535H 0.55 TCGA-W3-AA1R-06 22 29730326 29730326 G A AP1B1 Missense_Mutation p.S746F 0.34 tolerated(0.74) benign(0.003) TCGA-W3-AA1R-06 22 29885115 29885115 G A NEFH Missense_Mutation p.G496R 0.43 tolerated(0.36) unknown(0) TCGA-W3-AA1R-06 22 31672982 31672982 C T LIMK2 Silent p.L639L 0.48 TCGA-W3-AA1R-06 22 32887091 32887091 T C FBXO7 Missense_Mutation p.I297T 0.46 deleterious(0.02) benign(0.232) TCGA-W3-AA1R-06 22 33673128 33673128 C T LARGE Missense_Mutation p.R664K 0.33 tolerated(0.51) benign(0.022) TCGA-W3-AA1R-06 22 35947958 35947958 C T RASD2 Missense_Mutation p.A227V 0.43 tolerated(0.08) possibly_damaging(0.589) TCGA-W3-AA1R-06 22 36900371 36900371 G A FOXRED2 Silent p.L275L 0.11 TCGA-W3-AA1R-06 22 38121538 38121538 C T TRIOBP Missense_Mutation p.S992F 0.37 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-W3-AA1R-06 22 38134651 38134651 C T TRIOBP Silent p.F1703F 0.27 TCGA-W3-AA1R-06 22 38167687 38167687 C T TRIOBP Nonsense_Mutation p.Q2294* 0.40 TCGA-W3-AA1R-06 22 39122153 39122153 C T GTPBP1 Missense_Mutation p.P406S 0.54 tolerated(0.07) probably_damaging(0.937) TCGA-W3-AA1R-06 22 39145778 39145778 A G SUN2 Silent p.L224L 0.54 TCGA-W3-AA1R-06 22 40036980 40036980 C T CACNA1I Silent p.I283I 0.27 TCGA-W3-AA1R-06 22 42466400 42466400 T A NAGA 5'UTR 0.37 TCGA-W3-AA1R-06 22 42610578 42610578 G A TCF20 Missense_Mutation p.S245F 0.45 probably_damaging(0.998) TCGA-W3-AA1R-06 22 42781155 42781155 G A NFAM1 3'UTR 0.37 TCGA-W3-AA1R-06 22 45580467 45580467 G A NUP50 Silent p.L446L 0.32 TCGA-W3-AA1R-06 22 46653000 46653000 C T PKDREJ Missense_Mutation p.D2074N 0.41 tolerated(0.15) possibly_damaging(0.67) TCGA-W3-AA1R-06 22 50479642 50479642 C T TTLL8 Intron 0.46 TCGA-W3-AA1R-06 22 50552932 50552932 C T MOV10L1 Missense_Mutation p.S336F 0.32 deleterious(0) benign(0.379) TCGA-W3-AA1R-06 22 50719253 50719253 G A PLXNB2 Missense_Mutation p.P1305S 0.15 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 2 100368697 100368697 G A AFF3 Missense_Mutation p.P355S 0.43 tolerated(0.3) benign(0.043) TCGA-W3-AA1R-06 2 101650162 101650162 G A TBC1D8 Silent p.S539S 0.34 TCGA-W3-AA1R-06 2 102000006 102000006 C T CREG2 Silent p.G200G 0.26 TCGA-W3-AA1R-06 2 102959957 102959957 C T IL1RL1 Intron 0.35 TCGA-W3-AA1R-06 2 103068464 103068464 C T IL18RAP Silent p.G541G 0.40 TCGA-W3-AA1R-06 2 105858813 105858813 G A GPR45 Silent p.S166S 0.52 TCGA-W3-AA1R-06 2 106498298 106498298 C T NCK2 Silent p.V247V 0.34 TCGA-W3-AA1R-06 2 107021620 107021620 G A RGPD3 3'UTR 0.37 TCGA-W3-AA1R-06 2 107040646 107040646 C T RGPD3 Silent p.L1259L 0.39 TCGA-W3-AA1R-06 2 107446526 107446526 G A ST6GAL2 Silent p.F438F 0.41 TCGA-W3-AA1R-06 2 107459778 107459778 G A ST6GAL2 Missense_Mutation p.P219L 0.56 possibly_damaging(0.74) TCGA-W3-AA1R-06 2 107459924 107459924 C T ST6GAL2 Silent p.R170R 0.38 TCGA-W3-AA1R-06 2 108489103 108489103 G A RGPD4 Missense_Mutation p.R1548K 0.23 tolerated(0.69) benign(0.001) TCGA-W3-AA1R-06 2 110373326 110373326 C T SOWAHC Silent p.P420P 0.44 TCGA-W3-AA1R-06 2 111789272 111789272 C T ACOXL Silent p.S450S 0.45 TCGA-W3-AA1R-06 2 11337384 11337384 G A ROCK2 Nonsense_Mutation p.Q1124* 0.36 TCGA-W3-AA1R-06 2 11337385 11337385 G A ROCK2 Silent p.L1123L 0.37 TCGA-W3-AA1R-06 2 113588992 113588992 G A IL1B Silent p.F158F 0.53 TCGA-W3-AA1R-06 2 113763649 113763649 G A IL36A Missense_Mutation p.D37N 0.41 tolerated(1) benign(0.001) TCGA-W3-AA1R-06 2 116066925 116066925 C T DPP10 Silent p.T61T 0.40 TCGA-W3-AA1R-06 2 120020736 120020736 C T STEAP3 Missense_Mutation p.P440L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 2 120219443 120219443 C T SCTR Missense_Mutation p.G257E 0.34 tolerated(0.16) benign(0.038) TCGA-W3-AA1R-06 2 121050795 121050795 A C RALB Missense_Mutation p.K194Q 0.39 tolerated(0.06) benign(0.142) TCGA-W3-AA1R-06 2 122004523 122004523 G A TFCP2L1 Silent p.F176F 0.48 TCGA-W3-AA1R-06 2 125555743 125555743 G A CNTNAP5 Silent p.K1020K 0.53 TCGA-W3-AA1R-06 2 125671721 125671721 C T CNTNAP5 Silent p.T1259T 0.34 TCGA-W3-AA1R-06 2 128347723 128347723 G A MYO7B Silent p.L637L 0.39 TCGA-W3-AA1R-06 2 128392699 128392699 C T MYO7B Silent p.A1880A 0.43 TCGA-W3-AA1R-06 2 133174756 133174756 G A GPR39 Silent p.G47G 0.39 TCGA-W3-AA1R-06 2 137990654 137990654 C T THSD7B Missense_Mutation p.R701W 0.40 deleterious(0) probably_damaging(0.942) TCGA-W3-AA1R-06 2 141032000 141032000 A T LRP1B Missense_Mutation p.F4379I 0.41 benign(0) TCGA-W3-AA1R-06 2 143913139 143913139 G A ARHGAP15 Missense_Mutation p.R27K 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-W3-AA1R-06 2 1459923 1459923 C T TPO Silent p.L230L 0.48 TCGA-W3-AA1R-06 2 1497738 1497738 C T TPO Missense_Mutation p.P645S 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-W3-AA1R-06 2 152554141 152554141 C T NEB Missense_Mutation p.E392K 0.49 probably_damaging(0.999) TCGA-W3-AA1R-06 2 155555557 155555557 C T KCNJ3 Silent p.T90T 0.42 TCGA-W3-AA1R-06 2 158140813 158140813 C T GALNT5 Missense_Mutation p.H492Y 0.24 deleterious(0.03) benign(0.313) TCGA-W3-AA1R-06 2 158595058 158595058 G A ACVR1 Missense_Mutation p.P430L 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 2 159481574 159481574 C T PKP4 Missense_Mutation p.S263F 0.47 tolerated(0.08) benign(0.013) TCGA-W3-AA1R-06 2 160706622 160706622 C T LY75-CD302 Missense_Mutation p.E1007K 0.44 tolerated(0.32) probably_damaging(0.953) TCGA-W3-AA1R-06 2 160812320 160812320 A T PLA2R1 Silent p.L1014L 0.43 TCGA-W3-AA1R-06 2 162696349 162696349 G A SLC4A10 Missense_Mutation p.E110K 0.33 tolerated(0.33) benign(0.01) TCGA-W3-AA1R-06 2 163072495 163072495 G A FAP Missense_Mutation p.P260L 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 2 165578662 165578662 G A COBLL1 Missense_Mutation p.P307S 0.40 deleterious(0.02) probably_damaging(0.949) TCGA-W3-AA1R-06 2 166170562 166170562 G A SCN2A Missense_Mutation p.E443K 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1R-06 2 166223837 166223837 G A SCN2A Missense_Mutation p.E1211K 0.46 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1R-06 2 166897901 166897901 G A SCN1A Missense_Mutation p.P752L 0.32 deleterious(0.03) benign(0.122) TCGA-W3-AA1R-06 2 167060509 167060509 C T SCN9A Missense_Mutation p.G1566E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.41 tolerated(0.08) benign(0.007) TCGA-W3-AA1R-06 2 167322317 167322317 C T SCN7A Missense_Mutation p.R282K 0.43 tolerated(0.87) benign(0.023) TCGA-W3-AA1R-06 2 16746919 16746919 G A FAM49A Nonsense_Mutation p.R63* 0.38 TCGA-W3-AA1R-06 2 168101122 168101122 G A XIRP2 Missense_Mutation p.E1074K 0.42 possibly_damaging(0.856) TCGA-W3-AA1R-06 2 169850246 169850246 C A ABCB11 Missense_Mutation p.G253V 0.50 tolerated(0.14) probably_damaging(0.999) TCGA-W3-AA1R-06 2 170096229 170096229 G A LRP2 Missense_Mutation p.P1368S 0.42 benign(0.323) TCGA-W3-AA1R-06 2 171092569 171092569 C T MYO3B Silent p.I224I 0.44 TCGA-W3-AA1R-06 2 179408964 179408964 C T TTN Missense_Mutation p.E31998K 0.41 TCGA-W3-AA1R-06 2 179435129 179435129 T C TTN Missense_Mutation p.R25244G 0.50 TCGA-W3-AA1R-06 2 179435660 179435660 C T TTN Missense_Mutation p.E25067K 0.45 TCGA-W3-AA1R-06 2 179443562 179443562 G A TTN Missense_Mutation p.S22732L 0.49 TCGA-W3-AA1R-06 2 179449392 179449392 A C TTN Intron 0.39 TCGA-W3-AA1R-06 2 179453568 179453568 C T TTN Missense_Mutation p.D20962N 0.39 TCGA-W3-AA1R-06 2 179454314 179454314 T C TTN Missense_Mutation p.D20713G 0.45 TCGA-W3-AA1R-06 2 179474482 179474482 C A TTN Missense_Mutation p.R17223L 0.41 TCGA-W3-AA1R-06 2 179481883 179481883 C T TTN Missense_Mutation p.E15947K 0.90 TCGA-W3-AA1R-06 2 179497397 179497397 C T TTN Missense_Mutation p.E14446K 0.36 TCGA-W3-AA1R-06 2 179497724 179497724 A T TTN Missense_Mutation p.H14378Q 0.46 TCGA-W3-AA1R-06 2 179516393 179516393 C T TTN Missense_Mutation p.V13155M 0.46 TCGA-W3-AA1R-06 2 179558375 179558375 G A TTN Missense_Mutation p.H10519Y 0.29 TCGA-W3-AA1R-06 2 179583434 179583434 G A TTN Missense_Mutation p.L8165F 0.48 TCGA-W3-AA1R-06 2 179584078 179584078 C T TTN Silent p.P8013P 0.41 TCGA-W3-AA1R-06 2 179586690 179586690 C T TTN Missense_Mutation p.G7567E 0.31 TCGA-W3-AA1R-06 2 179587815 179587815 C T TTN Missense_Mutation p.E7307K 0.54 TCGA-W3-AA1R-06 2 179588843 179588843 C T TTN Missense_Mutation p.R7048Q 0.20 TCGA-W3-AA1R-06 2 179590163 179590163 C T TTN Missense_Mutation p.G6923E 0.47 TCGA-W3-AA1R-06 2 179605809 179605809 C T TTN Missense_Mutation p.D4051N 0.36 TCGA-W3-AA1R-06 2 179605979 179605979 C T TTN Missense_Mutation p.G3994E 0.42 TCGA-W3-AA1R-06 2 179610596 179610596 C T TTN Intron 0.41 TCGA-W3-AA1R-06 2 179611278 179611278 T A TTN Intron 0.14 TCGA-W3-AA1R-06 2 179615378 179615378 C T TTN Intron 0.33 TCGA-W3-AA1R-06 2 179616619 179616619 T C TTN Intron 0.38 TCGA-W3-AA1R-06 2 179702297 179702297 G A CCDC141 Missense_Mutation p.P1217S 0.43 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 2 179733955 179733955 C T CCDC141 Silent p.K761K 0.46 TCGA-W3-AA1R-06 2 180838412 180838412 G A CWC22 Silent p.I233I 0.36 TCGA-W3-AA1R-06 2 182360118 182360118 C T ITGA4 Missense_Mutation p.R454W 0.43 deleterious(0.02) benign(0.004) TCGA-W3-AA1R-06 2 182360570 182360570 G A ITGA4 Silent p.T482T 0.39 TCGA-W3-AA1R-06 2 182399044 182399044 C T ITGA4 Missense_Mutation p.P944S 0.32 tolerated(0.2) benign(0.006) TCGA-W3-AA1R-06 2 182399045 182399045 C T ITGA4 Missense_Mutation p.P944L 0.29 tolerated(0.29) benign(0.006) TCGA-W3-AA1R-06 2 182403989 182403989 G A CERKL Silent p.F482F 0.30 TCGA-W3-AA1R-06 2 18745167 18745167 C T NT5C1B Silent p.K576K 0.49 TCGA-W3-AA1R-06 2 190445270 190445270 G A SLC40A1 5'UTR 0.50 TCGA-W3-AA1R-06 2 193044272 193044272 A G TMEFF2 Intron 0.64 TCGA-W3-AA1R-06 2 196729080 196729080 T A DNAH7 Silent p.I2433I 0.40 TCGA-W3-AA1R-06 2 196791195 196791195 G A DNAH7 Silent p.I1189I 0.53 TCGA-W3-AA1R-06 2 196834672 196834672 C T DNAH7 Silent p.K735K 0.31 TCGA-W3-AA1R-06 2 197189798 197189798 C T HECW2 Missense_Mutation p.G216E 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 2 197594105 197594105 G A CCDC150 Silent p.R915R 0.37 TCGA-W3-AA1R-06 2 197737250 197737250 G A PGAP1 Missense_Mutation p.S548F 0.24 tolerated(0.07) benign(0.259) TCGA-W3-AA1R-06 2 1983504 1983504 C T MYT1L Missense_Mutation p.G16R 0.46 deleterious(0) unknown(0) TCGA-W3-AA1R-06 2 200173498 200173498 G A SATB2 Silent p.P575P 0.35 TCGA-W3-AA1R-06 2 202074152 202074152 G A CASP10 Missense_Mutation p.D428N 0.40 tolerated(0.17) benign(0.019) TCGA-W3-AA1R-06 2 202611369 202611369 G A ALS2 Nonsense_Mutation p.R640* 0.45 TCGA-W3-AA1R-06 2 203420419 203420419 C G BMPR2 Silent p.L677L 0.19 TCGA-W3-AA1R-06 2 207171618 207171618 A C ZDBF2 Missense_Mutation p.E789A 0.43 tolerated(0.14) possibly_damaging(0.678) TCGA-W3-AA1R-06 2 207631874 207631874 C T FASTKD2 Missense_Mutation p.R153C 0.30 tolerated(0.1) possibly_damaging(0.54) TCGA-W3-AA1R-06 2 211082731 211082731 A G ACADL Missense_Mutation p.I110T 0.48 tolerated(0.4) possibly_damaging(0.597) TCGA-W3-AA1R-06 2 211163280 211163280 C A MYL1 Missense_Mutation p.K56N 0.38 deleterious(0.02) probably_damaging(0.975) TCGA-W3-AA1R-06 2 21224807 21224807 C T APOB Missense_Mutation p.R4496K 0.43 benign(0.01) TCGA-W3-AA1R-06 2 21228066 21228066 G A APOB Missense_Mutation p.P3892S 0.38 probably_damaging(0.999) TCGA-W3-AA1R-06 2 21231433 21231433 G A APOB Silent p.F2769F 0.34 TCGA-W3-AA1R-06 2 21231646 21231646 C T APOB Silent p.V2698V 0.40 TCGA-W3-AA1R-06 2 21236075 21236075 C T APOB Missense_Mutation p.M1391I 0.34 benign(0.001) TCGA-W3-AA1R-06 2 213872507 213872507 G A IKZF2 Silent p.L386L 0.48 TCGA-W3-AA1R-06 2 215835122 215835122 T A ABCA12 Missense_Mutation p.E1855D 0.34 tolerated(0.38) benign(0.009) TCGA-W3-AA1R-06 2 215835124 215835124 C T ABCA12 Missense_Mutation p.E1855K 0.34 tolerated(0.59) benign(0.009) TCGA-W3-AA1R-06 2 218925470 218925470 C T CXCR2P1 RNA 0.43 TCGA-W3-AA1R-06 2 219134886 219134886 G A AAMP 5'UTR 0.47 TCGA-W3-AA1R-06 2 219894730 219894730 A G CCDC108 Silent p.L454L 0.32 TCGA-W3-AA1R-06 2 219894731 219894731 A G CCDC108 Missense_Mutation p.L454P 0.31 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1R-06 2 219922265 219922265 G A IHH Missense_Mutation p.S156L 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 2 220136830 220136830 G A TUBA4B RNA 0.60 TCGA-W3-AA1R-06 2 220146670 220146670 C T DNAJB2 Missense_Mutation p.P80L 0.33 tolerated(0.09) probably_damaging(0.981) TCGA-W3-AA1R-06 2 220309413 220309413 G A SPEG Missense_Mutation p.G143R 0.48 benign(0.307) TCGA-W3-AA1R-06 2 220354402 220354402 C T SPEG Missense_Mutation p.P2888S 0.44 benign(0.004) TCGA-W3-AA1R-06 2 220506386 220506386 A G SLC4A3 Missense_Mutation p.D1239G 0.44 deleterious(0) possibly_damaging(0.765) TCGA-W3-AA1R-06 2 222291188 222291188 G A EPHA4 Nonsense_Mutation p.Q948* 0.35 TCGA-W3-AA1R-06 2 225669928 225669928 G A DOCK10 Missense_Mutation p.S1349L 0.37 deleterious(0) benign(0.273) TCGA-W3-AA1R-06 2 226447453 226447453 C T NYAP2 Silent p.V440V 0.49 TCGA-W3-AA1R-06 2 227895237 227895237 G A COL4A4 Missense_Mutation p.P1299S 0.26 unknown(0) TCGA-W3-AA1R-06 2 227924870 227924870 C T COL4A4 Missense_Mutation p.E716K 0.31 possibly_damaging(0.874) TCGA-W3-AA1R-06 2 227942790 227942790 C T COL4A4 Missense_Mutation p.D603N 0.29 possibly_damaging(0.811) TCGA-W3-AA1R-06 2 227942791 227942791 C T COL4A4 Silent p.G602G 0.23 TCGA-W3-AA1R-06 2 228388509 228388509 G T AGFG1 Silent p.V136V 0.41 TCGA-W3-AA1R-06 2 228846460 228846460 G A SPHKAP Silent p.L1692L 0.41 TCGA-W3-AA1R-06 2 228884117 228884117 C T SPHKAP Missense_Mutation p.G485R 0.52 tolerated(0.22) benign(0.03) TCGA-W3-AA1R-06 2 228884523 228884523 C T SPHKAP Missense_Mutation p.M349I 0.35 tolerated(0.22) benign(0.001) TCGA-W3-AA1R-06 2 229046344 229046344 G A SPHKAP 5'UTR 0.32 TCGA-W3-AA1R-06 2 230377642 230377642 G A DNER Missense_Mutation p.S335F 0.36 tolerated(1) benign(0.003) TCGA-W3-AA1R-06 2 230659997 230659997 G A TRIP12 Missense_Mutation p.P1214L 0.46 deleterious(0.02) benign(0.036) TCGA-W3-AA1R-06 2 230923973 230923973 C T SLC16A14 Nonsense_Mutation p.W32* 0.38 TCGA-W3-AA1R-06 2 231112634 231112634 T C SP140 Missense_Mutation p.L249P 0.48 tolerated(0.16) possibly_damaging(0.731) TCGA-W3-AA1R-06 2 233394672 233394672 C T CHRND Missense_Mutation p.H215Y 0.22 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1R-06 2 233785265 233785265 G A NGEF Missense_Mutation p.S186L 0.35 tolerated(0.15) possibly_damaging(0.884) TCGA-W3-AA1R-06 2 234229371 234229371 C T SAG Nonsense_Mutation p.Q93* 0.65 TCGA-W3-AA1R-06 2 234601942 234601942 C T UGT1A6 Missense_Mutation p.H98Y 0.55 tolerated(1) possibly_damaging(0.75) TCGA-W3-AA1R-06 2 234637960 234637960 C A UGT1A3 Missense_Mutation p.P63Q 0.38 deleterious(0) possibly_damaging(0.857) TCGA-W3-AA1R-06 2 234638549 234638549 G A UGT1A3 Silent p.G259G 0.41 TCGA-W3-AA1R-06 2 234872016 234872016 G A TRPM8 Missense_Mutation p.E582K 0.36 tolerated(0.1) probably_damaging(0.993) TCGA-W3-AA1R-06 2 235404789 235404789 C T ARL4C Missense_Mutation p.E148K 0.35 tolerated(0.27) possibly_damaging(0.903) TCGA-W3-AA1R-06 2 235950582 235950582 C T SH3BP4 Missense_Mutation p.S390F 0.43 tolerated(0.96) benign(0.001) TCGA-W3-AA1R-06 2 237028884 237028884 C T AGAP1 Silent p.F721F 0.38 TCGA-W3-AA1R-06 2 237405936 237405936 C T IQCA1 Missense_Mutation p.R69Q 0.40 tolerated(0.06) possibly_damaging(0.857) TCGA-W3-AA1R-06 2 238253034 238253034 G A COL6A3 Missense_Mutation p.L2543F 0.38 unknown(0) TCGA-W3-AA1R-06 2 238253035 238253035 G A COL6A3 Silent p.F2542F 0.38 TCGA-W3-AA1R-06 2 239039047 239039047 G A ESPNL Silent p.E564E 0.25 TCGA-W3-AA1R-06 2 239049705 239049705 G A KLHL30 Missense_Mutation p.E104K 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 2 23980828 23980828 C T ATAD2B Missense_Mutation p.E1180K 0.31 tolerated(0.22) benign(0.057) TCGA-W3-AA1R-06 2 241831009 241831009 C T C2orf54 Missense_Mutation p.R229K 0.39 tolerated(0.51) benign(0.01) TCGA-W3-AA1R-06 2 241969734 241969734 G A SNED1 Missense_Mutation p.E83K 0.33 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 2 242312499 242312499 T G FARP2 Intron 0.33 TCGA-W3-AA1R-06 2 26667175 26667175 G A DRC1 Missense_Mutation p.D372N 0.43 deleterious(0.02) probably_damaging(0.915) TCGA-W3-AA1R-06 2 26699035 26699035 C T OTOF Missense_Mutation p.G943S 0.50 tolerated(0.2) benign(0.356) TCGA-W3-AA1R-06 2 26699036 26699036 C T OTOF Silent p.L942L 0.47 TCGA-W3-AA1R-06 2 27527920 27527920 G A TRIM54 Missense_Mutation p.E245K 0.24 tolerated(0.12) benign(0.08) TCGA-W3-AA1R-06 2 29295843 29295843 C T C2orf71 Missense_Mutation p.E429K 0.29 tolerated(0.55) benign(0.024) TCGA-W3-AA1R-06 2 30862995 30862995 A T LCLAT1 Missense_Mutation p.D252V 0.34 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 2 30974092 30974092 G A CAPN13 Silent p.F371F 0.22 TCGA-W3-AA1R-06 2 31135102 31135102 C T GALNT14 Missense_Mutation p.G501E 0.39 tolerated(0.23) benign(0.105) TCGA-W3-AA1R-06 2 31135152 31135152 G A GALNT14 Silent p.V484V 0.47 TCGA-W3-AA1R-06 2 31168674 31168674 G A GALNT14 Silent p.I244I 0.35 TCGA-W3-AA1R-06 2 3673642 3673642 A T COLEC11 Intron 0.35 TCGA-W3-AA1R-06 2 37032583 37032583 C T VIT Missense_Mutation p.R389W 0.21 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1R-06 2 37235889 37235889 C T HEATR5B Missense_Mutation p.E1463K 0.46 tolerated(0.22) benign(0.098) TCGA-W3-AA1R-06 2 39517453 39517453 G A MAP4K3 Missense_Mutation p.P432S 0.40 tolerated(0.18) probably_damaging(0.998) TCGA-W3-AA1R-06 2 40655635 40655635 C T SLC8A1 Missense_Mutation p.E596K 0.35 tolerated(0.16) possibly_damaging(0.904) TCGA-W3-AA1R-06 2 48898765 48898765 G A STON1-GTF2A1L Silent p.Q1129Q 0.31 TCGA-W3-AA1R-06 2 50765512 50765512 C T NRXN1 Silent p.K714K 0.35 TCGA-W3-AA1R-06 2 50779976 50779976 G A NRXN1 Missense_Mutation p.S543F 0.37 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1R-06 2 50780103 50780103 G A NRXN1 Missense_Mutation p.P501S 0.43 deleterious(0) probably_damaging(0.943) TCGA-W3-AA1R-06 2 50847301 50847301 C T NRXN1 Silent p.G433G 0.35 TCGA-W3-AA1R-06 2 50850753 50850753 C T NRXN1 Missense_Mutation p.G311E 0.37 deleterious(0.05) benign(0.103) TCGA-W3-AA1R-06 2 51255153 51255153 C T NRXN1 Missense_Mutation p.G87S 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-W3-AA1R-06 2 56094304 56094304 G A EFEMP1 Silent p.I462I 0.41 TCGA-W3-AA1R-06 2 56098174 56098174 C T EFEMP1 Missense_Mutation p.R362Q 0.41 tolerated(0.16) benign(0.004) TCGA-W3-AA1R-06 2 58387297 58387297 T C FANCL Silent p.L351L 0.38 TCGA-W3-AA1R-06 2 61182191 61182191 G A PUS10 Missense_Mutation p.S340F 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 2 61431444 61431444 G A USP34 Missense_Mutation p.P3111S 0.41 tolerated(0.2) benign(0.147) TCGA-W3-AA1R-06 2 70451695 70451696 - A TIA1 Frame_Shift_Ins p.N156Qfs*6 0.25 TCGA-W3-AA1R-06 2 70904955 70904955 C T ADD2 Missense_Mutation p.E480K 0.52 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 2 70933373 70933373 C T ADD2 Missense_Mutation p.M56I 0.29 deleterious(0.04) benign(0.052) TCGA-W3-AA1R-06 2 71060117 71060117 G A CD207 Missense_Mutation p.L211F 0.30 tolerated(0.12) benign(0.011) TCGA-W3-AA1R-06 2 71653627 71653627 C T ZNF638 Missense_Mutation p.T1543I 0.45 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 2 71742815 71742815 G A DYSF Silent p.K274K 0.34 TCGA-W3-AA1R-06 2 71838613 71838613 C A DYSF Silent p.R1360R 0.07 TCGA-W3-AA1R-06 2 72360264 72360264 A G CYP26B1 Missense_Mutation p.L345P 0.47 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1R-06 2 73195661 73195661 G A SFXN5 Missense_Mutation p.A248V 0.54 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 2 73519757 73519757 C T EGR4 Missense_Mutation p.D200N 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 2 73679120 73679120 T C ALMS1 Silent p.H1821H 0.41 TCGA-W3-AA1R-06 2 74689236 74689236 G A MOGS Silent p.Y560Y 0.41 TCGA-W3-AA1R-06 2 74710204 74710204 C T CCDC142 5'Flank 0.39 TCGA-W3-AA1R-06 2 79254218 79254218 G A REG3G Missense_Mutation p.G85E 0.41 deleterious(0.02) possibly_damaging(0.493) TCGA-W3-AA1R-06 2 85626357 85626357 C T CAPG Missense_Mutation p.A190T 0.26 deleterious(0.03) probably_damaging(0.979) TCGA-W3-AA1R-06 2 85783359 85783359 G A GGCX Silent p.A188A 0.32 TCGA-W3-AA1R-06 2 89265853 89265853 G A IGKV1-6 Silent p.F93F 0.41 TCGA-W3-AA1R-06 2 8940574 8940574 G A KIDINS220 Nonsense_Mutation p.R286* 0.48 TCGA-W3-AA1R-06 2 89442154 89442154 C A IGKV3-20 Missense_Mutation p.S84I 0.39 deleterious(0.02) possibly_damaging(0.638) TCGA-W3-AA1R-06 2 89976417 89976417 C T IGKV2D-30 Silent p.F96F 0.39 TCGA-W3-AA1R-06 2 90154028 90154028 G A IGKV3D-15 Missense_Mutation p.A39T 0.50 deleterious(0.01) possibly_damaging(0.79) TCGA-W3-AA1R-06 2 9583704 9583704 A T CPSF3 Missense_Mutation p.M386L 0.27 tolerated(0.74) benign(0.025) TCGA-W3-AA1R-06 2 95944800 95944800 G A PROM2 Silent p.L394L 0.35 TCGA-W3-AA1R-06 2 96550086 96550086 A C ANKRD36C Splice_Site p.X91_splice 0.41 TCGA-W3-AA1R-06 2 98388779 98388779 G A TMEM131 Missense_Mutation p.P1477S 0.34 deleterious_low_confidence(0.04) benign(0.212) TCGA-W3-AA1R-06 3 100962522 100962522 C T IMPG2 Missense_Mutation p.E885K 0.42 tolerated(1) benign(0) TCGA-W3-AA1R-06 3 101117716 101117716 A T SENP7 Nonsense_Mutation p.Y222* 0.30 TCGA-W3-AA1R-06 3 101520542 101520542 C T NXPE3 Missense_Mutation p.S186F 0.41 deleterious(0.05) benign(0.023) TCGA-W3-AA1R-06 3 105266051 105266051 G A ALCAM Missense_Mutation p.G388E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 108147687 108147687 C T MYH15 Silent p.R1138R 0.23 TCGA-W3-AA1R-06 3 108163484 108163484 C T MYH15 Intron 0.50 TCGA-W3-AA1R-06 3 108224663 108224663 G A MYH15 Silent p.C54C 0.36 TCGA-W3-AA1R-06 3 108474705 108474705 C T RETNLB Missense_Mutation p.D86N 0.37 tolerated(0.16) possibly_damaging(0.454) TCGA-W3-AA1R-06 3 108754206 108754206 G A MORC1 Silent p.I480I 0.29 TCGA-W3-AA1R-06 3 109049587 109049587 C T DPPA4 Missense_Mutation p.E155K 0.31 tolerated(0.22) benign(0.015) TCGA-W3-AA1R-06 3 10916761 10916761 C T SLC6A11 Missense_Mutation p.S291F 0.36 tolerated(0.06) probably_damaging(0.917) TCGA-W3-AA1R-06 3 11070471 11070471 A T SLC6A1 Missense_Mutation p.I377F 0.62 tolerated(0.72) benign(0.367) TCGA-W3-AA1R-06 3 111286401 111286401 G A CD96 Silent p.T150T 0.40 TCGA-W3-AA1R-06 3 111286466 111286466 C T CD96 Missense_Mutation p.S172L 0.40 tolerated(0.2) benign(0.012) TCGA-W3-AA1R-06 3 111312409 111312409 G A ZBED2 Missense_Mutation p.P214S 0.40 tolerated_low_confidence(0.13) benign(0.341) TCGA-W3-AA1R-06 3 111604325 111604325 G A PHLDB2 Intron 0.50 TCGA-W3-AA1R-06 3 111632604 111632604 C T PHLDB2 Intron 0.37 TCGA-W3-AA1R-06 3 111873846 111873846 C T SLC9C1 Missense_Mutation p.E1139K 0.30 tolerated_low_confidence(0.17) benign(0.001) TCGA-W3-AA1R-06 3 111923102 111923102 T A SLC9C1 Missense_Mutation p.K712I 0.47 tolerated(0.08) possibly_damaging(0.726) TCGA-W3-AA1R-06 3 111983142 111983142 G A SLC9C1 Silent p.F309F 0.38 TCGA-W3-AA1R-06 3 112358312 112358312 C A CCDC80 Silent p.G147G 0.41 TCGA-W3-AA1R-06 3 112993331 112993331 C T BOC Silent p.L448L 0.38 TCGA-W3-AA1R-06 3 113955646 113955646 G A ZNF80 Silent p.F92F 0.64 TCGA-W3-AA1R-06 3 118867127 118867127 C T C3orf30 Missense_Mutation p.S500L 0.75 deleterious(0) benign(0.017) TCGA-W3-AA1R-06 3 119217556 119217556 T A TIMMDC1 5'UTR 0.82 TCGA-W3-AA1R-06 3 121206874 121206874 G A POLQ Missense_Mutation p.S1635L 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1R-06 3 121647356 121647356 G A SLC15A2 Missense_Mutation p.G432E 0.40 deleterious(0.02) benign(0.072) TCGA-W3-AA1R-06 3 121973103 121973103 G A CASR Missense_Mutation p.D23N 0.46 tolerated(0.6) benign(0.002) TCGA-W3-AA1R-06 3 121994778 121994778 G A CASR Silent p.E499E 0.45 TCGA-W3-AA1R-06 3 121994779 121994779 G A CASR Missense_Mutation p.D500N 0.45 tolerated(0.09) possibly_damaging(0.831) TCGA-W3-AA1R-06 3 121994834 121994834 G A CASR Missense_Mutation p.G518E 0.47 tolerated(0.06) possibly_damaging(0.894) TCGA-W3-AA1R-06 3 123033104 123033104 G A ADCY5 Missense_Mutation p.S807F 0.18 tolerated(0.47) benign(0.411) TCGA-W3-AA1R-06 3 123419455 123419455 G A MYLK Missense_Mutation p.R954C 0.44 deleterious(0) benign(0.007) TCGA-W3-AA1R-06 3 123452717 123452717 G A MYLK Missense_Mutation p.P376S 0.42 tolerated(0.53) benign(0.003) TCGA-W3-AA1R-06 3 124627035 124627035 G A MUC13 Missense_Mutation p.P499S 0.26 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1R-06 3 124732411 124732411 G A HEG1 Missense_Mutation p.S671F 0.45 deleterious(0.04) benign(0.017) TCGA-W3-AA1R-06 3 125032154 125032154 G A ZNF148 Missense_Mutation p.P111S 0.39 tolerated(0.27) possibly_damaging(0.82) TCGA-W3-AA1R-06 3 125833481 125833481 C T ALDH1L1 Silent p.V677V 0.34 TCGA-W3-AA1R-06 3 126137523 126137523 C T CCDC37 Silent p.L186L 0.42 TCGA-W3-AA1R-06 3 126180580 126180580 G A ZXDC Missense_Mutation p.S642F 0.45 deleterious(0.02) benign(0.03) TCGA-W3-AA1R-06 3 126915935 126915935 C T C3orf56 Missense_Mutation p.P136L 0.35 tolerated(0.06) possibly_damaging(0.851) TCGA-W3-AA1R-06 3 127337933 127337933 G A MCM2 Missense_Mutation p.E693K 0.44 tolerated(0.26) benign(0.009) TCGA-W3-AA1R-06 3 127646621 127646621 G A KBTBD12 Missense_Mutation p.G362E 0.37 tolerated(0.74) benign(0.102) TCGA-W3-AA1R-06 3 129247835 129247835 G A RHO Missense_Mutation p.V87I 0.35 tolerated(0.15) probably_damaging(0.99) TCGA-W3-AA1R-06 3 12966181 12966181 C T IQSEC1 Missense_Mutation p.G558R 0.29 deleterious(0) possibly_damaging(0.797) TCGA-W3-AA1R-06 3 130095176 130095176 A C COL6A5 Missense_Mutation p.K55T 0.42 deleterious(0.03) probably_damaging(0.918) TCGA-W3-AA1R-06 3 130852682 130852697 GGAGTTTCTCGACTTC - NEK11 Frame_Shift_Del p.G177* 0.23 TCGA-W3-AA1R-06 3 132036354 132036354 C T ACPP Silent p.F18F 0.39 TCGA-W3-AA1R-06 3 133118952 133118952 G T BFSP2 Missense_Mutation p.D9Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-W3-AA1R-06 3 13393466 13393466 G A NUP210 Silent p.I916I 0.40 TCGA-W3-AA1R-06 3 134225965 134225965 C T CEP63 Missense_Mutation p.S20F 0.34 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 3 142030492 142030492 T C XRN1 Missense_Mutation p.Q1661R 0.38 tolerated_low_confidence(0.21) benign(0.025) TCGA-W3-AA1R-06 3 142503708 142503708 C T TRPC1 Nonsense_Mutation p.Q375* 0.26 TCGA-W3-AA1R-06 3 142741865 142741865 C T U2SURP Missense_Mutation p.P397S 0.47 tolerated(0.05) benign(0.165) TCGA-W3-AA1R-06 3 142741866 142741866 C T U2SURP Missense_Mutation p.P397L 0.53 deleterious(0.02) benign(0.231) TCGA-W3-AA1R-06 3 143212505 143212505 C T SLC9A9 Missense_Mutation p.M435I 0.34 tolerated(0.09) possibly_damaging(0.88) TCGA-W3-AA1R-06 3 14552731 14552731 G A GRIP2 RNA 0.42 TCGA-W3-AA1R-06 3 147127998 147127998 G T ZIC1 Silent p.V33V 0.29 TCGA-W3-AA1R-06 3 148458933 148458933 C T AGTR1 Silent p.I37I 0.22 TCGA-W3-AA1R-06 3 148614311 148614311 G A CPA3 Silent p.P357P 0.41 TCGA-W3-AA1R-06 3 148880502 148880502 C T HPS3 Missense_Mutation p.T773I 0.31 tolerated(0.13) benign(0.375) TCGA-W3-AA1R-06 3 149093272 149093272 G A TM4SF1 Missense_Mutation p.S124F 0.31 deleterious(0.02) benign(0.147) TCGA-W3-AA1R-06 3 15070142 15070142 C T NR2C2 Missense_Mutation p.S302F 0.40 deleterious(0) benign(0.248) TCGA-W3-AA1R-06 3 150883225 150883225 G A MED12L Missense_Mutation p.E426K 0.42 tolerated(0.13) probably_damaging(0.977) TCGA-W3-AA1R-06 3 150931273 150931273 C T P2RY14 Missense_Mutation p.E278K 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 151156276 151156276 C T IGSF10 Missense_Mutation p.D2025N 0.42 deleterious(0.03) possibly_damaging(0.651) TCGA-W3-AA1R-06 3 151598773 151598773 G A SUCNR1 Missense_Mutation p.V148I 0.31 tolerated(0.67) benign(0.009) TCGA-W3-AA1R-06 3 151598807 151598807 C T SUCNR1 Missense_Mutation p.P159L 0.31 tolerated(0.6) benign(0.004) TCGA-W3-AA1R-06 3 152554329 152554329 C T P2RY1 Missense_Mutation p.P253L 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1R-06 3 152554737 152554737 G A P2RY1 3'UTR 0.44 TCGA-W3-AA1R-06 3 15288882 15288882 C T CAPN7 Nonsense_Mutation p.Q708* 0.30 TCGA-W3-AA1R-06 3 153995469 153995469 A G DHX36 Missense_Mutation p.V869A 0.35 deleterious(0) benign(0.065) TCGA-W3-AA1R-06 3 154147271 154147271 A G GPR149 Missense_Mutation p.F45S 0.56 deleterious(0.04) benign(0.04) TCGA-W3-AA1R-06 3 155199034 155199034 T A PLCH1 Missense_Mutation p.Q1602L 0.29 tolerated(0.16) possibly_damaging(0.694) TCGA-W3-AA1R-06 3 155551683 155551683 G A SLC33A1 Nonsense_Mutation p.Q371* 0.23 TCGA-W3-AA1R-06 3 156422885 156422885 C T TIPARP Nonsense_Mutation p.Q647* 0.46 TCGA-W3-AA1R-06 3 164741402 164741402 G A SI Missense_Mutation p.R1019C 0.35 deleterious(0) possibly_damaging(0.887) TCGA-W3-AA1R-06 3 164786519 164786519 G A SI Silent p.F158F 0.35 TCGA-W3-AA1R-06 3 164906144 164906144 G A SLITRK3 Silent p.S825S 0.36 TCGA-W3-AA1R-06 3 164906145 164906145 G A SLITRK3 Missense_Mutation p.S825F 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1R-06 3 167414821 167414821 G A PDCD10 Missense_Mutation p.R82C 0.42 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 3 168807795 168807795 G A MECOM Missense_Mutation p.P1009S 0.37 tolerated(0.46) benign(0.089) TCGA-W3-AA1R-06 3 168810803 168810803 C T MECOM Missense_Mutation p.R913Q 0.45 deleterious(0.03) probably_damaging(0.913) TCGA-W3-AA1R-06 3 168819875 168819875 C T MECOM Missense_Mutation p.R792Q 0.42 deleterious(0.03) probably_damaging(0.939) TCGA-W3-AA1R-06 3 169579543 169579543 G A LRRC31 Silent p.F78F 0.38 TCGA-W3-AA1R-06 3 170828654 170828654 G A TNIK Silent p.L711L 0.50 TCGA-W3-AA1R-06 3 174814953 174814953 G A NAALADL2 Silent p.G139G 0.15 TCGA-W3-AA1R-06 3 180377338 180377338 G A CCDC39 Missense_Mutation p.R214C 0.32 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1R-06 3 182988691 182988691 G A B3GNT5 Missense_Mutation p.D369N 0.43 tolerated_low_confidence(1) benign(0.004) TCGA-W3-AA1R-06 3 183217424 183217424 C T KLHL6 Nonsense_Mutation p.W367* 0.41 TCGA-W3-AA1R-06 3 183217425 183217425 C T KLHL6 Nonsense_Mutation p.W367* 0.39 TCGA-W3-AA1R-06 3 18390775 18390775 C T SATB1 Missense_Mutation p.D759N 0.44 tolerated(0.06) possibly_damaging(0.691) TCGA-W3-AA1R-06 3 183963140 183963140 G A ALG3 Missense_Mutation p.P151S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 184295768 184295768 C T EPHB3 Silent p.V574V 0.45 TCGA-W3-AA1R-06 3 185431188 185431188 G A C3orf65 5'UTR 0.20 TCGA-W3-AA1R-06 3 186449380 186449380 G A KNG1 Missense_Mutation p.R240Q 0.37 tolerated(0.18) benign(0.016) TCGA-W3-AA1R-06 3 188327202 188327202 C T LPP Missense_Mutation p.A228V 0.48 deleterious(0) benign(0.437) TCGA-W3-AA1R-06 3 189038589 189038589 C T TPRG1 Missense_Mutation p.R270C 0.49 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 3 189702368 189702368 G A LEPREL1 Silent p.I400I 0.40 TCGA-W3-AA1R-06 3 190106228 190106228 T C CLDN16 Missense_Mutation p.L107P 0.39 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 3 191861784 191861784 G A FGF12 3'UTR 0.47 TCGA-W3-AA1R-06 3 191861785 191861785 G A FGF12 3'UTR 0.48 TCGA-W3-AA1R-06 3 195245814 195245814 C G PPP1R2 Splice_Site p.X191_splice 0.31 TCGA-W3-AA1R-06 3 195391005 195391005 T G SDHAP2 RNA 0.38 TCGA-W3-AA1R-06 3 195515747 195515747 C T MUC4 Missense_Mutation p.A902T 0.41 unknown(0) TCGA-W3-AA1R-06 3 196242096 196242096 G A SMCO1 5'UTR 0.32 TCGA-W3-AA1R-06 3 197581266 197581266 C T LRCH3 Missense_Mutation p.P532S 0.36 tolerated(0.14) benign(0.021) TCGA-W3-AA1R-06 3 27233622 27233622 C A NEK10 Missense_Mutation p.L801F 0.39 deleterious(0.01) probably_damaging(0.923) TCGA-W3-AA1R-06 3 28555609 28555609 A G ZCWPW2 Missense_Mutation p.K238E 0.27 tolerated(0.06) benign(0.011) TCGA-W3-AA1R-06 3 2928874 2928874 G A CNTN4 Silent p.G302G 0.29 TCGA-W3-AA1R-06 3 3076406 3076406 G A CNTN4 Missense_Mutation p.S625N 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 3 31725251 31725251 G A OSBPL10 Missense_Mutation p.S534F 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 32031887 32031887 C T ZNF860 Missense_Mutation p.S439L 0.35 deleterious(0.02) benign(0.002) TCGA-W3-AA1R-06 3 361452 361452 G A CHL1 5'UTR 0.33 TCGA-W3-AA1R-06 3 36778876 36778876 C T DCLK3 Missense_Mutation p.M425I 0.54 deleterious(0.04) benign(0.004) TCGA-W3-AA1R-06 3 36874441 36874441 C T TRANK1 Silent p.R2167R 0.42 TCGA-W3-AA1R-06 3 36898642 36898642 C T TRANK1 Silent p.K813K 0.45 TCGA-W3-AA1R-06 3 38316964 38316964 C T SLC22A13 Missense_Mutation p.P304S 0.43 tolerated(0.16) benign(0.117) TCGA-W3-AA1R-06 3 38409708 38409708 C T XYLB Silent p.S202S 0.34 TCGA-W3-AA1R-06 3 38523716 38523716 G T ACVR2B Nonsense_Mutation p.E368* 0.44 TCGA-W3-AA1R-06 3 38595811 38595811 C T SCN5A Nonsense_Mutation p.W1591* 0.40 TCGA-W3-AA1R-06 3 38616864 38616864 G A SCN5A Missense_Mutation p.T1197I 0.45 tolerated(0.05) probably_damaging(0.913) TCGA-W3-AA1R-06 3 38629007 38629007 A T SCN5A Missense_Mutation p.Y774N 0.35 deleterious(0) probably_damaging(0.921) TCGA-W3-AA1R-06 3 38793898 38793898 C T SCN10A Missense_Mutation p.D523N 0.43 deleterious(0.03) possibly_damaging(0.821) TCGA-W3-AA1R-06 3 38798164 38798164 C T SCN10A Splice_Site p.X430_splice 0.35 TCGA-W3-AA1R-06 3 38924814 38924814 C T SCN11A Nonsense_Mutation p.W1043* 0.49 TCGA-W3-AA1R-06 3 39228083 39228083 G A XIRP1 Missense_Mutation p.P952S 0.37 tolerated(0.39) benign(0.027) TCGA-W3-AA1R-06 3 40231382 40231382 C T MYRIP Missense_Mutation p.P365S 0.38 tolerated(0.51) benign(0.125) TCGA-W3-AA1R-06 3 40231677 40231677 C T MYRIP Missense_Mutation p.S463F 0.45 tolerated(0.09) possibly_damaging(0.522) TCGA-W3-AA1R-06 3 42244291 42244291 C T TRAK1 Intron 0.61 TCGA-W3-AA1R-06 3 42730123 42730123 G A KLHL40 Silent p.S445S 0.52 TCGA-W3-AA1R-06 3 42906525 42906525 C T ACKR2 Silent p.I177I 0.43 TCGA-W3-AA1R-06 3 44488892 44488892 G A ZNF445 Silent p.S757S 0.37 TCGA-W3-AA1R-06 3 44488893 44488893 G A ZNF445 Missense_Mutation p.S757F 0.37 deleterious(0) unknown(0) TCGA-W3-AA1R-06 3 45133017 45133017 G A CDCP1 Silent p.F547F 0.23 TCGA-W3-AA1R-06 3 45879483 45879483 G C LZTFL1 Missense_Mutation p.R22G 0.34 deleterious(0.01) benign(0.185) TCGA-W3-AA1R-06 3 45942530 45942530 G A CCR9 Missense_Mutation p.D84N 0.40 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1R-06 3 46307794 46307794 C T CCR3 3'UTR 0.67 TCGA-W3-AA1R-06 3 46480853 46480853 C T LTF Silent p.P614P 0.36 TCGA-W3-AA1R-06 3 4683788 4683788 G A ITPR1 Silent p.L126L 0.45 TCGA-W3-AA1R-06 3 46967001 46967001 G A CCDC12 Silent p.V76V 0.32 TCGA-W3-AA1R-06 3 47058699 47058699 G A SETD2 Missense_Mutation p.P2527S 0.43 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1R-06 3 48630859 48630859 C G COL7A1 Silent p.G150G 0.40 TCGA-W3-AA1R-06 3 49051689 49051689 C T WDR6 Missense_Mutation p.P907S 0.40 tolerated(0.38) possibly_damaging(0.503) TCGA-W3-AA1R-06 3 49138864 49138864 C T QARS Missense_Mutation p.R267Q 0.48 deleterious(0) possibly_damaging(0.848) TCGA-W3-AA1R-06 3 49547970 49547970 G A DAG1 Translation_Start_Site p.M1? 0.34 tolerated_low_confidence(0.14) benign(0.38) TCGA-W3-AA1R-06 3 49691455 49691455 C T BSN Missense_Mutation p.P1489L 0.38 unknown(0) TCGA-W3-AA1R-06 3 49749989 49749989 C T RNF123 Silent p.L858L 0.44 TCGA-W3-AA1R-06 3 49898204 49898204 G A CAMKV Silent p.I240I 0.41 TCGA-W3-AA1R-06 3 50289960 50289960 C T GNAI2 Missense_Mutation p.P98L 0.35 deleterious(0.05) benign(0.158) TCGA-W3-AA1R-06 3 50357172 50357172 G A HYAL2 Missense_Mutation p.P250L 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 50513580 50513580 C T CACNA2D2 Missense_Mutation p.R86Q 0.23 tolerated(0.38) benign(0.022) TCGA-W3-AA1R-06 3 51673592 51673592 C T RAD54L2 Missense_Mutation p.S673F 0.47 tolerated(0.06) benign(0.044) TCGA-W3-AA1R-06 3 51679696 51679696 C T RAD54L2 Missense_Mutation p.P916S 0.38 tolerated(0.45) benign(0.147) TCGA-W3-AA1R-06 3 51708450 51708450 C T TEX264 Missense_Mutation p.R44C 0.34 deleterious(0.01) benign(0.08) TCGA-W3-AA1R-06 3 51937082 51937082 C T IQCF1 Silent p.T9T 0.41 TCGA-W3-AA1R-06 3 52088327 52088327 G A DUSP7 Missense_Mutation p.S194F 0.42 deleterious(0.01) possibly_damaging(0.668) TCGA-W3-AA1R-06 3 52561686 52561686 G A NT5DC2 Silent p.F328F 0.40 TCGA-W3-AA1R-06 3 52816177 52816177 A C ITIH1 Missense_Mutation p.N275T 0.33 deleterious(0) possibly_damaging(0.573) TCGA-W3-AA1R-06 3 53766901 53766901 C A CACNA1D Missense_Mutation p.P865T 0.43 deleterious(0) benign(0.286) TCGA-W3-AA1R-06 3 53852140 53852140 C T CHDH Silent p.G483G 0.47 TCGA-W3-AA1R-06 3 54958983 54958983 C T LRTM1 Silent p.L89L 0.51 TCGA-W3-AA1R-06 3 56173693 56173693 C T ERC2 Silent p.L439L 0.67 TCGA-W3-AA1R-06 3 56330349 56330349 G A ERC2 Silent p.L258L 0.34 TCGA-W3-AA1R-06 3 56468929 56468929 C T ERC2 Missense_Mutation p.G36E 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1R-06 3 57488089 57488089 G A DNAH12 Missense_Mutation p.R402W 0.37 deleterious(0.02) possibly_damaging(0.687) TCGA-W3-AA1R-06 3 58120462 58120462 G A FLNB Missense_Mutation p.R1576Q 0.45 deleterious(0.01) benign(0.212) TCGA-W3-AA1R-06 3 58519186 58519186 C T ACOX2 Nonsense_Mutation p.W190* 0.34 TCGA-W3-AA1R-06 3 65416549 65416549 G A MAGI1 Silent p.P457P 0.33 TCGA-W3-AA1R-06 3 71015164 71015164 G A FOXP1 Missense_Mutation p.S591F 0.38 tolerated(0.2) benign(0.132) TCGA-W3-AA1R-06 3 71804149 71804149 C T GPR27 Nonsense_Mutation p.Q317* 0.36 TCGA-W3-AA1R-06 3 73111986 73111986 T C EBLN2 Silent p.L252L 0.50 TCGA-W3-AA1R-06 3 74350587 74350587 G A CNTN3 Missense_Mutation p.P686L 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 3 74418386 74418386 C T CNTN3 Silent p.E300E 0.39 TCGA-W3-AA1R-06 3 7620138 7620138 C T GRM7 Silent p.V515V 0.26 TCGA-W3-AA1R-06 3 7620969 7620969 C T GRM7 Silent p.F792F 0.39 TCGA-W3-AA1R-06 3 89259142 89259142 T C EPHA3 Missense_Mutation p.Y96H 0.43 tolerated(0.15) probably_damaging(0.997) TCGA-W3-AA1R-06 3 89462371 89462371 G A EPHA3 Missense_Mutation p.E615K 0.41 deleterious(0) benign(0.174) TCGA-W3-AA1R-06 3 89498375 89498375 G A EPHA3 Missense_Mutation p.G783R 0.40 deleterious(0.03) benign(0.263) TCGA-W3-AA1R-06 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.43 deleterious(0) possibly_damaging(0.841) TCGA-W3-AA1R-06 3 93768344 93768344 G A ARL13B Silent p.T373T 0.35 TCGA-W3-AA1R-06 3 96706808 96706808 G A EPHA6 Missense_Mutation p.G362E 0.37 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1R-06 3 97202879 97202879 C T EPHA6 Missense_Mutation p.R726C 0.35 deleterious(0.03) benign(0.023) TCGA-W3-AA1R-06 3 9726892 9726892 C T MTMR14 Intron 0.36 TCGA-W3-AA1R-06 3 9781014 9781014 C T BRPF1 Missense_Mutation p.P311S 0.41 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 3 97868569 97868569 C T OR5H14 Missense_Mutation p.L114F 0.37 deleterious(0) possibly_damaging(0.816) TCGA-W3-AA1R-06 3 97888442 97888442 C T OR5H15 Missense_Mutation p.S300L 0.38 deleterious(0.05) possibly_damaging(0.589) TCGA-W3-AA1R-06 3 98001737 98001737 G A OR5H2 Silent p.S2S 0.41 TCGA-W3-AA1R-06 3 98073124 98073124 C T OR5K4 Missense_Mutation p.R143W 0.46 tolerated(0.11) possibly_damaging(0.67) TCGA-W3-AA1R-06 3 98073129 98073129 G A OR5K4 Missense_Mutation p.M144I 0.35 deleterious(0.04) benign(0.074) TCGA-W3-AA1R-06 3 9969873 9969873 C T IL17RC Silent p.S353S 0.30 TCGA-W3-AA1R-06 4 100140348 100140348 G A ADH6 5'UTR 0.48 TCGA-W3-AA1R-06 4 100268280 100268280 G A ADH1C Missense_Mutation p.R48C 0.42 possibly_damaging(0.776) TCGA-W3-AA1R-06 4 100356399 100356399 T G ADH7 5'Flank 0.53 TCGA-W3-AA1R-06 4 100434254 100434254 C T C4orf17 Missense_Mutation p.P6S 0.40 tolerated(0.12) benign(0.01) TCGA-W3-AA1R-06 4 104066251 104066251 C T CENPE Missense_Mutation p.E1605K 0.37 possibly_damaging(0.781) TCGA-W3-AA1R-06 4 106744213 106744213 T C GSTCD Missense_Mutation p.F448S 0.29 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 4 107847068 107847068 C T DKK2 Silent p.G87G 0.25 TCGA-W3-AA1R-06 4 1079733 1079733 A G RNF212 Silent p.L105L 0.16 TCGA-W3-AA1R-06 4 108608291 108608291 G A PAPSS1 Missense_Mutation p.P152S 0.39 deleterious(0.03) benign(0.012) TCGA-W3-AA1R-06 4 110446544 110446544 C T SEC24B Missense_Mutation p.P892L 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 4 110865049 110865049 C T EGF Silent p.L187L 0.39 TCGA-W3-AA1R-06 4 114302669 114302669 G A ANK2 3'UTR 0.32 TCGA-W3-AA1R-06 4 114823623 114823623 G A ARSJ Missense_Mutation p.P536L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 4 115998224 115998224 C T NDST4 5'UTR 0.62 TCGA-W3-AA1R-06 4 121698406 121698406 G A PRDM5 Missense_Mutation p.P492S 0.38 tolerated(0.08) probably_damaging(0.993) TCGA-W3-AA1R-06 4 126329892 126329892 G A FAT4 Missense_Mutation p.E1955K 0.20 probably_damaging(0.999) TCGA-W3-AA1R-06 4 126336611 126336611 G A FAT4 Missense_Mutation p.E2165K 0.37 probably_damaging(0.997) TCGA-W3-AA1R-06 4 126370702 126370702 G A FAT4 Missense_Mutation p.R2844Q 0.38 possibly_damaging(0.684) TCGA-W3-AA1R-06 4 126408723 126408723 G A FAT4 Missense_Mutation p.G4347E 0.52 probably_damaging(0.917) TCGA-W3-AA1R-06 4 126408746 126408746 C T FAT4 Nonsense_Mutation p.R4355* 0.31 TCGA-W3-AA1R-06 4 126412779 126412779 G A FAT4 Silent p.L4934L 0.37 TCGA-W3-AA1R-06 4 128564788 128564788 C T INTU Missense_Mutation p.H87Y 0.33 deleterious(0.01) probably_damaging(0.959) TCGA-W3-AA1R-06 4 128608861 128608861 C T INTU Missense_Mutation p.R430C 0.44 deleterious(0) benign(0.068) TCGA-W3-AA1R-06 4 138452214 138452214 C T PCDH18 Silent p.K343K 0.44 TCGA-W3-AA1R-06 4 145061799 145061799 T A GYPA 5'UTR 0.33 TCGA-W3-AA1R-06 4 154271240 154271240 G A MND1 Missense_Mutation p.E10K 0.26 deleterious(0.03) benign(0.076) TCGA-W3-AA1R-06 4 155510004 155510004 G A FGA Missense_Mutation p.S102F 0.28 deleterious(0) possibly_damaging(0.706) TCGA-W3-AA1R-06 4 155718019 155718019 G A RBM46 Missense_Mutation p.E39K 0.22 deleterious(0.01) possibly_damaging(0.554) TCGA-W3-AA1R-06 4 157999228 157999228 G A GLRB Missense_Mutation p.E18K 0.22 tolerated_low_confidence(0.14) benign(0.01) TCGA-W3-AA1R-06 4 158284026 158284026 A T GRIA2 Missense_Mutation p.M828L 0.42 tolerated(0.29) probably_damaging(0.988) TCGA-W3-AA1R-06 4 16037360 16037360 T A PROM1 Nonsense_Mutation p.K101* 0.44 TCGA-W3-AA1R-06 4 162376223 162376223 C T FSTL5 Missense_Mutation p.G592R 0.61 tolerated(0.05) probably_damaging(0.998) TCGA-W3-AA1R-06 4 162697177 162697177 T A FSTL5 Missense_Mutation p.L153F 0.28 deleterious(0) benign(0.296) TCGA-W3-AA1R-06 4 164271659 164271659 C T NPY5R Silent p.F78F 0.44 TCGA-W3-AA1R-06 4 166946583 166946583 G A TLL1 Silent p.K386K 0.56 TCGA-W3-AA1R-06 4 167656015 167656015 G T SPOCK3 3'UTR 0.12 TCGA-W3-AA1R-06 4 167656016 167656016 C T SPOCK3 3'UTR 0.12 TCGA-W3-AA1R-06 4 167810364 167810364 C T SPOCK3 Missense_Mutation p.G172E 0.33 tolerated(0.08) benign(0.424) TCGA-W3-AA1R-06 4 169632898 169632898 G A PALLD Silent p.R596R 0.47 TCGA-W3-AA1R-06 4 170618480 170618480 C T CLCN3 Silent p.Y386Y 0.36 TCGA-W3-AA1R-06 4 173873273 173873273 C T GALNTL6 Missense_Mutation p.T412M 0.34 tolerated(0.09) benign(0.068) TCGA-W3-AA1R-06 4 17805153 17805153 G A DCAF16 Silent p.F204F 0.39 TCGA-W3-AA1R-06 4 17910895 17910895 A T LCORL Missense_Mutation p.F168L 0.39 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1R-06 4 184570717 184570717 G A RWDD4 Missense_Mutation p.S123L 0.34 tolerated(0.28) benign(0.002) TCGA-W3-AA1R-06 4 185045412 185045412 C T ENPP6 Silent p.E145E 0.32 TCGA-W3-AA1R-06 4 185687905 185687905 G C ACSL1 Missense_Mutation p.F378L 0.29 tolerated(0.52) benign(0.007) TCGA-W3-AA1R-06 4 187541710 187541710 C T FAT1 Silent p.E2010E 0.48 TCGA-W3-AA1R-06 4 188923956 188923956 G A ZFP42 5'UTR 0.19 TCGA-W3-AA1R-06 4 189064890 189064890 G A TRIML1 Intron 0.40 TCGA-W3-AA1R-06 4 20469410 20469410 G A SLIT2 Missense_Mutation p.R144K 0.32 tolerated(0.15) probably_damaging(0.994) TCGA-W3-AA1R-06 4 20469411 20469411 G A SLIT2 Silent p.R144R 0.32 TCGA-W3-AA1R-06 4 20555445 20555445 C T SLIT2 Missense_Mutation p.P860L 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 4 22737664 22737664 G A GBA3 Missense_Mutation p.G40E 0.44 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1R-06 4 25005756 25005756 C T LGI2 Missense_Mutation p.E319K 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1R-06 4 2949288 2949288 G A NOP14 Silent p.D488D 0.38 TCGA-W3-AA1R-06 4 3188392 3188392 C T HTT Silent p.S1645S 0.35 TCGA-W3-AA1R-06 4 3478080 3478080 C T DOK7 Missense_Mutation p.H115Y 0.32 tolerated(0.1) possibly_damaging(0.61) TCGA-W3-AA1R-06 4 3520668 3520668 C T LRPAP1 Silent p.R174R 0.31 TCGA-W3-AA1R-06 4 36230381 36230381 G A ARAP2 Missense_Mutation p.S243F 0.29 deleterious_low_confidence(0) benign(0.012) TCGA-W3-AA1R-06 4 38829993 38829993 T G TLR6 Missense_Mutation p.S368R 0.43 tolerated(0.49) benign(0.257) TCGA-W3-AA1R-06 4 39229950 39229950 T C WDR19 Missense_Mutation p.Y584H 0.60 tolerated(0.11) possibly_damaging(0.558) TCGA-W3-AA1R-06 4 40245372 40245372 G C RHOH Missense_Mutation p.E122D 0.21 tolerated(0.76) benign(0.019) TCGA-W3-AA1R-06 4 40245536 40245536 G A RHOH Missense_Mutation p.R177Q 0.24 tolerated(0.45) benign(0.001) TCGA-W3-AA1R-06 4 40356597 40356597 C T CHRNA9 3'UTR 0.22 TCGA-W3-AA1R-06 4 40438495 40438495 G A RBM47 Silent p.I431I 0.26 TCGA-W3-AA1R-06 4 41748192 41748192 C T PHOX2B Missense_Mutation p.D193N 0.43 deleterious_low_confidence(0.04) unknown(0) TCGA-W3-AA1R-06 4 42122139 42122139 G A BEND4 Missense_Mutation p.S440L 0.24 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-W3-AA1R-06 4 46967184 46967184 C T GABRA4 Missense_Mutation p.V313M 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 4 49063860 49063860 G A CWH43 Missense_Mutation p.E685K 0.39 tolerated(0.37) benign(0.006) TCGA-W3-AA1R-06 4 53773694 53773694 G A SCFD2 Missense_Mutation p.S591F 0.37 deleterious(0.05) possibly_damaging(0.652) TCGA-W3-AA1R-06 4 54011614 54011614 C T SCFD2 Missense_Mutation p.G483R 0.44 deleterious(0.01) probably_damaging(0.943) TCGA-W3-AA1R-06 4 56759755 56759755 C T EXOC1 Missense_Mutation p.R588C 0.45 tolerated(0.06) possibly_damaging(0.809) TCGA-W3-AA1R-06 4 6107506 6107506 C T JAKMIP1 Silent p.K106K 0.50 TCGA-W3-AA1R-06 4 6107559 6107559 C T JAKMIP1 Missense_Mutation p.E89K 0.15 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1R-06 4 62812647 62812647 C T LPHN3 Missense_Mutation p.A744V 0.42 tolerated(1) benign(0.044) TCGA-W3-AA1R-06 4 68925063 68925063 C T TMPRSS11F Missense_Mutation p.G380E 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 4 70361605 70361605 C T UGT2B4 5'UTR 0.32 TCGA-W3-AA1R-06 4 71063707 71063707 C T ODAM Missense_Mutation p.P70S 0.35 tolerated(0.06) probably_damaging(0.932) TCGA-W3-AA1R-06 4 71255496 71255496 G A SMR3B Silent p.G57G 0.37 TCGA-W3-AA1R-06 4 74316453 74316453 G A AFP Missense_Mutation p.A471T 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-W3-AA1R-06 4 74347574 74347574 G A AFM Missense_Mutation p.D28N 0.37 tolerated(0.07) probably_damaging(0.911) TCGA-W3-AA1R-06 4 75065516 75065516 G C MTHFD2L Missense_Mutation p.V153L 0.46 tolerated(0.1) benign(0.211) TCGA-W3-AA1R-06 4 75673357 75673357 G A BTC Missense_Mutation p.P144L 0.34 tolerated(0.34) probably_damaging(0.963) TCGA-W3-AA1R-06 4 76781902 76781902 G A PPEF2 Missense_Mutation p.S727F 0.56 deleterious(0.01) possibly_damaging(0.868) TCGA-W3-AA1R-06 4 76794433 76794433 A G PPEF2 Silent p.A451A 0.42 TCGA-W3-AA1R-06 4 77661984 77661984 C T SHROOM3 Silent p.L886L 0.65 TCGA-W3-AA1R-06 4 77977423 77977423 G A CCNI Silent p.A99A 0.43 TCGA-W3-AA1R-06 4 78873787 78873787 C T MRPL1 3'UTR 0.47 TCGA-W3-AA1R-06 4 79418054 79418054 G A FRAS1 Nonsense_Mutation p.W3018* 0.22 TCGA-W3-AA1R-06 4 81884688 81884688 C A C4orf22 Missense_Mutation p.N225K 0.25 deleterious(0.05) benign(0.192) TCGA-W3-AA1R-06 4 82013595 82013595 C T PRKG2 Missense_Mutation p.G713D 0.33 deleterious(0) probably_damaging(0.935) TCGA-W3-AA1R-06 4 86916532 86916532 C T ARHGAP24 Silent p.T575T 0.31 TCGA-W3-AA1R-06 4 87656782 87656782 T C PTPN13 Silent p.Y729Y 0.51 TCGA-W3-AA1R-06 4 87744804 87744804 G A SLC10A6 3'UTR 0.53 TCGA-W3-AA1R-06 4 88104369 88104369 C A KLHL8 Missense_Mutation p.R313M 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 4 90856138 90856138 C T MMRN1 Missense_Mutation p.S436L 0.34 tolerated(0.16) benign(0.015) TCGA-W3-AA1R-06 4 94690508 94690508 T A GRID2 Nonsense_Mutation p.C836* 0.32 TCGA-W3-AA1R-06 4 96123936 96123936 C G UNC5C Silent p.S694S 0.50 TCGA-W3-AA1R-06 4 99342422 99342422 A G RAP1GDS1 Silent p.Q440Q 0.57 TCGA-W3-AA1R-06 4 99802132 99802132 C T EIF4E 3'UTR 0.24 TCGA-W3-AA1R-06 5 101834348 101834348 C T SLCO6A1 Silent p.R67R 0.53 TCGA-W3-AA1R-06 5 102519016 102519016 C T PPIP5K2 Nonsense_Mutation p.R1002* 0.34 TCGA-W3-AA1R-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.50 TCGA-W3-AA1R-06 5 110820013 110820013 G A CAMK4 Missense_Mutation p.G424E 0.55 tolerated_low_confidence(0.18) benign(0.004) TCGA-W3-AA1R-06 5 111598268 111598268 G A EPB41L4A Missense_Mutation p.P189S 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1R-06 5 114499243 114499243 C T TRIM36 Missense_Mutation p.M90I 0.38 tolerated(0.41) benign(0.001) TCGA-W3-AA1R-06 5 115351063 115351063 G A AQPEP Silent p.K855K 0.38 TCGA-W3-AA1R-06 5 115818211 115818211 C G SEMA6A Silent p.G341G 0.47 TCGA-W3-AA1R-06 5 120022064 120022064 A T PRR16 Missense_Mutation p.E169V 0.54 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-W3-AA1R-06 5 121787121 121787121 C G SNCAIP Missense_Mutation p.P860R 0.53 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 5 122359633 122359633 C T PPIC Silent p.S192S 0.54 TCGA-W3-AA1R-06 5 124079994 124079994 G A ZNF608 Missense_Mutation p.P230L 0.55 tolerated(0.27) benign(0.124) TCGA-W3-AA1R-06 5 124079995 124079995 G A ZNF608 Missense_Mutation p.P230S 0.54 tolerated(0.67) benign(0.007) TCGA-W3-AA1R-06 5 125967495 125967495 C T C5orf48 Silent p.L23L 0.17 TCGA-W3-AA1R-06 5 130797703 130797703 C T RAPGEF6 Silent p.Q853Q 0.61 TCGA-W3-AA1R-06 5 130799689 130799689 A T RAPGEF6 Intron 0.17 TCGA-W3-AA1R-06 5 131924381 131924381 C T RAD50 Missense_Mutation p.R352C 0.54 deleterious(0) probably_damaging(0.959) TCGA-W3-AA1R-06 5 132150794 132150794 G A SOWAHA Missense_Mutation p.R494Q 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1R-06 5 134870636 134870636 G A NEUROG1 3'UTR 0.32 TCGA-W3-AA1R-06 5 136324162 136324162 C T SPOCK1 Missense_Mutation p.D293N 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 5 136973028 136973028 G A KLHL3 Missense_Mutation p.P426S 0.28 tolerated(1) benign(0.018) TCGA-W3-AA1R-06 5 13717593 13717593 G A DNAH5 Missense_Mutation p.S4179F 0.38 benign(0.046) TCGA-W3-AA1R-06 5 137801447 137801447 C T EGR1 5'UTR 0.56 TCGA-W3-AA1R-06 5 13811869 13811869 A T DNAH5 Missense_Mutation p.F2432I 0.47 benign(0.307) TCGA-W3-AA1R-06 5 13885322 13885322 C T DNAH5 Missense_Mutation p.G920E 0.32 probably_damaging(0.931) TCGA-W3-AA1R-06 5 139189363 139189363 G A PSD2 Missense_Mutation p.S113N 0.45 tolerated_low_confidence(0.08) benign(0.002) TCGA-W3-AA1R-06 5 13928272 13928272 G A DNAH5 Nonsense_Mutation p.Q70* 0.37 TCGA-W3-AA1R-06 5 140176300 140176300 C T PCDHA2 Missense_Mutation p.S584L 0.25 deleterious_low_confidence(0.03) benign(0.358) TCGA-W3-AA1R-06 5 140186907 140186907 G A PCDHA4 Silent p.V45V 0.29 TCGA-W3-AA1R-06 5 140202782 140202782 C T PCDHA5 Silent p.F474F 0.55 TCGA-W3-AA1R-06 5 140202883 140202883 C T PCDHA5 Missense_Mutation p.S508L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.647) TCGA-W3-AA1R-06 5 140209060 140209060 G A PCDHA6 Missense_Mutation p.V462M 0.15 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-W3-AA1R-06 5 140209494 140209494 G A PCDHA6 Nonsense_Mutation p.W606* 0.57 TCGA-W3-AA1R-06 5 140263249 140263249 G A PCDHA13 Missense_Mutation p.E466K 0.48 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-W3-AA1R-06 5 140347637 140347637 G A PCDHAC2 Missense_Mutation p.R429Q 0.27 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1R-06 5 140537085 140537085 C T PCDHB17 Silent p.S503S 0.53 TCGA-W3-AA1R-06 5 140552684 140552684 T C PCDHB7 Silent p.L90L 0.54 TCGA-W3-AA1R-06 5 140581579 140581579 C T PCDHB11 Silent p.T744T 0.47 TCGA-W3-AA1R-06 5 140603128 140603128 C T PCDHB14 Silent p.F17F 0.24 TCGA-W3-AA1R-06 5 140626523 140626523 C T PCDHB15 Silent p.F459F 0.50 TCGA-W3-AA1R-06 5 140626760 140626760 C T PCDHB15 Silent p.F538F 0.26 TCGA-W3-AA1R-06 5 140710603 140710603 C T PCDHGA1 Missense_Mutation p.P118S 0.53 tolerated_low_confidence(0.27) benign(0.002) TCGA-W3-AA1R-06 5 140711062 140711062 G A PCDHGA1 Missense_Mutation p.E271K 0.17 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-W3-AA1R-06 5 140720278 140720278 C T PCDHGA2 Silent p.R580R 0.25 TCGA-W3-AA1R-06 5 140724458 140724458 G A PCDHGA3 Silent p.G286G 0.55 TCGA-W3-AA1R-06 5 140736306 140736306 C T PCDHGA4 Silent p.I513I 0.44 TCGA-W3-AA1R-06 5 140763129 140763129 C T PCDHGA7 Silent p.P221P 0.60 TCGA-W3-AA1R-06 5 140782874 140782874 A T PCDHGA9 Missense_Mutation p.I119L 0.49 deleterious_low_confidence(0.02) benign(0.01) TCGA-W3-AA1R-06 5 143352 143352 C T PLEKHG4B Silent p.S200S 0.67 TCGA-W3-AA1R-06 5 145379758 145379758 G A SH3RF2 Silent p.G172G 0.22 TCGA-W3-AA1R-06 5 145379776 145379776 C T SH3RF2 Silent p.S178S 0.57 TCGA-W3-AA1R-06 5 1474767 1474767 G A LPCAT1 Silent p.F311F 0.35 TCGA-W3-AA1R-06 5 147582662 147582662 G A SPINK6 Translation_Start_Site p.M1? 0.61 deleterious(0) possibly_damaging(0.827) TCGA-W3-AA1R-06 5 148421153 148421153 G A SH3TC2 Missense_Mutation p.S186F 0.36 deleterious(0.01) possibly_damaging(0.498) TCGA-W3-AA1R-06 5 149245807 149245807 C T PDE6A Missense_Mutation p.D762N 0.47 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1R-06 5 149435833 149435833 G A CSF1R Silent p.F797F 0.39 TCGA-W3-AA1R-06 5 149749147 149749147 T G TCOF1 Missense_Mutation p.S207R 0.61 deleterious(0.02) probably_damaging(0.993) TCGA-W3-AA1R-06 5 150920285 150920285 C T FAT2 Missense_Mutation p.G2961E 0.21 benign(0.026) TCGA-W3-AA1R-06 5 150948025 150948025 G A FAT2 Silent p.T156T 0.30 TCGA-W3-AA1R-06 5 151771731 151771731 G A NMUR2 3'UTR 0.24 TCGA-W3-AA1R-06 5 153030017 153030017 G A GRIA1 Silent p.K206K 0.39 TCGA-W3-AA1R-06 5 153144189 153144189 C T GRIA1 Silent p.F683F 0.73 TCGA-W3-AA1R-06 5 153432608 153432608 T C MFAP3 Missense_Mutation p.F142L 0.28 deleterious(0.04) possibly_damaging(0.625) TCGA-W3-AA1R-06 5 154173543 154173543 G C LARP1 Missense_Mutation p.G274A 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 5 154268949 154268949 G A GEMIN5 Silent p.L1431L 0.56 TCGA-W3-AA1R-06 5 154292563 154292563 G A GEMIN5 Missense_Mutation p.P631S 0.20 tolerated(0.15) probably_damaging(0.96) TCGA-W3-AA1R-06 5 154396529 154396529 A G KIF4B Missense_Mutation p.Q1037R 0.24 tolerated(0.36) benign(0.001) TCGA-W3-AA1R-06 5 156936360 156936360 C T ADAM19 Nonsense_Mutation p.W285* 0.17 TCGA-W3-AA1R-06 5 158140051 158140051 C T EBF1 Silent p.G432G 0.55 TCGA-W3-AA1R-06 5 159992704 159992704 G A ATP10B Missense_Mutation p.T1381I 0.21 tolerated(0.08) benign(0.031) TCGA-W3-AA1R-06 5 160029699 160029699 G A ATP10B Missense_Mutation p.S1083F 0.28 deleterious(0) possibly_damaging(0.812) TCGA-W3-AA1R-06 5 16508697 16508697 G A FAM134B Intron 0.29 TCGA-W3-AA1R-06 5 167545391 167545391 C T TENM2 Silent p.P636P 0.24 TCGA-W3-AA1R-06 5 167626005 167626005 C T TENM2 Silent p.I1016I 0.25 TCGA-W3-AA1R-06 5 168195207 168195207 C T SLIT3 Intron 0.25 TCGA-W3-AA1R-06 5 168250315 168250315 G T SLIT3 Silent p.I193I 0.21 TCGA-W3-AA1R-06 5 168250330 168250330 G C SLIT3 Silent p.L188L 0.24 TCGA-W3-AA1R-06 5 169673081 169673081 A G C5orf58 Silent p.S91S 0.23 TCGA-W3-AA1R-06 5 170215595 170215595 C T GABRP 5'UTR 0.42 TCGA-W3-AA1R-06 5 170222378 170222378 G A GABRP Missense_Mutation p.G136E 0.48 tolerated(1) benign(0.04) TCGA-W3-AA1R-06 5 173036348 173036348 C T BOD1 Missense_Mutation p.R151Q 0.18 tolerated(0.38) benign(0.004) TCGA-W3-AA1R-06 5 174940535 174940535 G A SFXN1 Silent p.A222A 0.70 TCGA-W3-AA1R-06 5 176016150 176016150 C T CDHR2 Missense_Mutation p.S992F 0.28 tolerated(0.11) benign(0.071) TCGA-W3-AA1R-06 5 176314335 176314335 C T HK3 Missense_Mutation p.R535Q 0.50 tolerated(0.37) benign(0.028) TCGA-W3-AA1R-06 5 176315777 176315777 C T HK3 Missense_Mutation p.G335S 0.53 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 5 177059084 177059084 G A RP11-1277A3.2 Intron 0.24 TCGA-W3-AA1R-06 5 179200899 179200899 C T MAML1 Missense_Mutation p.S691F 0.60 deleterious(0) possibly_damaging(0.779) TCGA-W3-AA1R-06 5 179263608 179263608 C T SQSTM1 3'UTR 0.28 TCGA-W3-AA1R-06 5 180377415 180377415 C T BTNL8 Silent p.V458V 0.24 TCGA-W3-AA1R-06 5 19591165 19591165 C T CDH18 Splice_Site p.X333_splice 0.48 TCGA-W3-AA1R-06 5 31317540 31317540 C T CDH6 Missense_Mutation p.S524L 0.42 tolerated(0.31) possibly_damaging(0.72) TCGA-W3-AA1R-06 5 32712105 32712105 G A NPR3 Missense_Mutation p.A75T 0.35 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1R-06 5 33546277 33546277 C T ADAMTS12 Missense_Mutation p.E1445K 0.28 tolerated(0.27) benign(0.036) TCGA-W3-AA1R-06 5 33576811 33576811 G A ADAMTS12 Missense_Mutation p.S1107F 0.49 deleterious(0.01) possibly_damaging(0.634) TCGA-W3-AA1R-06 5 35909998 35909998 G A CAPSL Silent p.N165N 0.44 TCGA-W3-AA1R-06 5 35954364 35954364 C T UGT3A1 Silent p.G504G 0.30 TCGA-W3-AA1R-06 5 36051988 36051988 C T UGT3A2 Missense_Mutation p.E99K 0.41 tolerated(0.26) benign(0.042) TCGA-W3-AA1R-06 5 39203057 39203057 C T FYB Silent p.A12A 0.27 TCGA-W3-AA1R-06 5 41005708 41005708 G A MROH2B Silent p.I1263I 0.64 TCGA-W3-AA1R-06 5 41045932 41045932 C T MROH2B Silent p.K584K 0.33 TCGA-W3-AA1R-06 5 41161821 41161821 C T C6 Missense_Mutation p.E478K 0.43 deleterious(0.01) possibly_damaging(0.805) TCGA-W3-AA1R-06 5 50056123 50056123 C T PARP8 Intron 0.56 TCGA-W3-AA1R-06 5 50683477 50683477 G A ISL1 Silent p.E124E 0.43 TCGA-W3-AA1R-06 5 50683505 50683505 G A ISL1 Missense_Mutation p.D134N 0.45 tolerated(0.16) benign(0.005) TCGA-W3-AA1R-06 5 52369037 52369037 G A ITGA2 Missense_Mutation p.G840E 0.27 deleterious(0.03) benign(0.004) TCGA-W3-AA1R-06 5 54965686 54965686 G A SLC38A9 Missense_Mutation p.P90S 0.39 deleterious(0.04) probably_damaging(0.977) TCGA-W3-AA1R-06 5 55204227 55204227 G A IL31RA Missense_Mutation p.G497R 0.47 deleterious(0) probably_damaging(0.978) TCGA-W3-AA1R-06 5 63256290 63256290 G A HTR1A Silent p.F419F 0.43 TCGA-W3-AA1R-06 5 63257137 63257137 G A HTR1A Missense_Mutation p.A137V 0.39 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1R-06 5 6378522 6378522 G A MED10 Silent p.I25I 0.43 TCGA-W3-AA1R-06 5 66409991 66409991 C T MAST4 Missense_Mutation p.T512I 0.56 benign(0.345) TCGA-W3-AA1R-06 5 67522803 67522803 T C PIK3R1 Silent p.G100G 0.43 TCGA-W3-AA1R-06 5 73931575 73931575 G A ENC1 Missense_Mutation p.L246F 0.22 tolerated(0.7) probably_damaging(0.955) TCGA-W3-AA1R-06 5 74712762 74712762 A G COL4A3BP Missense_Mutation p.L387P 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 5 75950797 75950797 G A IQGAP2 Silent p.A763A 0.23 TCGA-W3-AA1R-06 5 76621469 76621469 C T PDE8B Missense_Mutation p.L169F 0.21 deleterious(0) probably_damaging(0.925) TCGA-W3-AA1R-06 5 78423722 78423722 G A BHMT Missense_Mutation p.R318K 0.19 deleterious(0.03) benign(0.087) TCGA-W3-AA1R-06 5 78423723 78423723 G A BHMT Silent p.R318R 0.24 TCGA-W3-AA1R-06 5 7859613 7859613 C A FASTKD3 Nonsense_Mutation p.E642* 0.45 TCGA-W3-AA1R-06 5 79027885 79027885 C T CMYA5 Silent p.T1099T 0.10 TCGA-W3-AA1R-06 5 79030323 79030323 G A CMYA5 Missense_Mutation p.G1912E 0.35 probably_damaging(0.998) TCGA-W3-AA1R-06 5 79751552 79751552 C T ZFYVE16 Missense_Mutation p.L1217F 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 5 80375990 80375990 G A RASGRF2 Missense_Mutation p.R313K 0.24 deleterious(0.04) possibly_damaging(0.791) TCGA-W3-AA1R-06 5 80375991 80375991 G A RASGRF2 Silent p.R313R 0.25 TCGA-W3-AA1R-06 5 82815632 82815632 G A VCAN Missense_Mutation p.E503K 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-W3-AA1R-06 5 82816243 82816243 G A VCAN Silent p.E706E 0.33 TCGA-W3-AA1R-06 5 82837577 82837577 G A VCAN Missense_Mutation p.E2919K 0.31 tolerated(0.07) benign(0.039) TCGA-W3-AA1R-06 5 89943335 89943335 C T GPR98 Nonsense_Mutation p.Q1015* 0.17 TCGA-W3-AA1R-06 5 89949315 89949315 C T GPR98 Silent p.F1308F 0.10 TCGA-W3-AA1R-06 5 89949476 89949476 T A GPR98 Missense_Mutation p.M1362K 0.48 possibly_damaging(0.537) TCGA-W3-AA1R-06 5 9122852 9122852 C T SEMA5A Missense_Mutation p.R566Q 0.49 tolerated(0.18) benign(0.439) TCGA-W3-AA1R-06 5 94289054 94289054 G A MCTP1 Missense_Mutation p.P284S 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 5 94852694 94852694 G A TTC37 Missense_Mutation p.R788C 0.31 deleterious(0) possibly_damaging(0.762) TCGA-W3-AA1R-06 5 95735720 95735720 C T PCSK1 Missense_Mutation p.R456K 0.50 tolerated(1) benign(0) TCGA-W3-AA1R-06 5 95764964 95764964 G T PCSK1 Silent p.R80R 0.43 TCGA-W3-AA1R-06 5 96315088 96315088 G A LNPEP Missense_Mutation p.R89Q 0.10 tolerated(0.06) benign(0.406) TCGA-W3-AA1R-06 6 106967959 106967959 C T AIM1 Missense_Mutation p.S551F 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1R-06 6 107391665 107391666 GG A BEND3 Frame_Shift_Del p.P244Lfs*75 0.46 TCGA-W3-AA1R-06 6 107955673 107955673 C T SOBP Missense_Mutation p.P542L 0.85 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1R-06 6 10898272 10898272 G A SYCP2L Missense_Mutation p.G122E 0.61 tolerated(0.52) benign(0.045) TCGA-W3-AA1R-06 6 109980559 109980559 C T AK9 Missense_Mutation p.G168R 0.61 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1R-06 6 117114295 117114295 G A GPRC6A Silent p.L597L 0.69 TCGA-W3-AA1R-06 6 117243236 117243236 G A RFX6 Silent p.K453K 0.58 TCGA-W3-AA1R-06 6 117683797 117683797 C T ROS1 Missense_Mutation p.G1117D 0.70 tolerated(1) benign(0.02) TCGA-W3-AA1R-06 6 123869698 123869698 C T TRDN Missense_Mutation p.E98K 0.60 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1R-06 6 127768598 127768598 C T KIAA0408 Nonsense_Mutation p.W289* 0.57 TCGA-W3-AA1R-06 6 128540130 128540130 G A PTPRK Missense_Mutation p.R269C 0.64 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 131917225 131917225 G A MED23 Missense_Mutation p.P953S 0.61 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1R-06 6 132181557 132181557 G A ENPP1 Missense_Mutation p.D276N 0.76 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1R-06 6 132693778 132693778 G A MOXD1 Missense_Mutation p.P211L 0.63 deleterious(0) possibly_damaging(0.624) TCGA-W3-AA1R-06 6 132910854 132910854 G A TAAR5 5'UTR 0.78 TCGA-W3-AA1R-06 6 133044084 133044084 C T VNN3 3'UTR 0.71 TCGA-W3-AA1R-06 6 135314906 135314906 C T HBS1L Missense_Mutation p.G358E 0.90 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 137245722 137245722 G A SLC35D3 Missense_Mutation p.G380E 0.76 tolerated_low_confidence(1) benign(0.013) TCGA-W3-AA1R-06 6 138655848 138655848 C T KIAA1244 Silent p.F1955F 0.77 TCGA-W3-AA1R-06 6 143075040 143075040 G A HIVEP2 Missense_Mutation p.P2182L 0.56 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1R-06 6 144782340 144782340 G A UTRN Silent p.K905K 0.71 TCGA-W3-AA1R-06 6 147885611 147885611 C T SAMD5 3'UTR 0.81 TCGA-W3-AA1R-06 6 151152880 151152880 C T PLEKHG1 Missense_Mutation p.P878L 0.77 deleterious(0) benign(0.107) TCGA-W3-AA1R-06 6 152671435 152671435 G C SYNE1 Missense_Mutation p.D3923E 0.77 benign(0.003) TCGA-W3-AA1R-06 6 152751744 152751744 C T SYNE1 Missense_Mutation p.R1521Q 0.70 possibly_damaging(0.587) TCGA-W3-AA1R-06 6 161010601 161010601 C T LPA Missense_Mutation p.E1311K 0.76 tolerated(0.38) probably_damaging(0.996) TCGA-W3-AA1R-06 6 1624454 1624454 C T GMDS Missense_Mutation p.E357K 0.59 deleterious_low_confidence(0.05) benign(0.168) TCGA-W3-AA1R-06 6 167550827 167550827 C T CCR6 Missense_Mutation p.S370L 0.81 deleterious(0) benign(0.286) TCGA-W3-AA1R-06 6 167794639 167794639 G A TCP10 Silent p.S83S 0.52 TCGA-W3-AA1R-06 6 18122087 18122087 G A NHLRC1 Missense_Mutation p.L251F 0.17 deleterious(0.04) probably_damaging(0.959) TCGA-W3-AA1R-06 6 2124958 2124958 G A GMDS Missense_Mutation p.S37F 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1R-06 6 24462999 24462999 A T GPLD1 Silent p.P282P 0.43 TCGA-W3-AA1R-06 6 24559282 24559282 G A KIAA0319 Missense_Mutation p.A898V 0.36 deleterious(0.03) benign(0.283) TCGA-W3-AA1R-06 6 25770311 25770311 G A SLC17A4 Nonsense_Mutation p.W105* 0.31 TCGA-W3-AA1R-06 6 25850996 25850996 C T SLC17A3 Silent p.L274L 0.23 TCGA-W3-AA1R-06 6 26107736 26107736 G A HIST1H1T Missense_Mutation p.H196Y 0.19 deleterious(0) benign(0.042) TCGA-W3-AA1R-06 6 26234637 26234637 C T HIST1H1D Silent p.A175A 0.19 TCGA-W3-AA1R-06 6 26405819 26405819 C T BTN3A1 Missense_Mutation p.L10F 0.22 tolerated(0.71) probably_damaging(0.949) TCGA-W3-AA1R-06 6 27925822 27925822 G A OR2B6 Silent p.K268K 0.29 TCGA-W3-AA1R-06 6 27925823 27925823 G A OR2B6 Missense_Mutation p.D269N 0.30 tolerated(0.1) benign(0.182) TCGA-W3-AA1R-06 6 27925826 27925826 C A OR2B6 Missense_Mutation p.Q270K 0.29 tolerated(0.13) benign(0.016) TCGA-W3-AA1R-06 6 28472099 28472099 C T GPX6 Silent p.L212L 0.27 TCGA-W3-AA1R-06 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.24 tolerated_low_confidence(0.09) benign(0.04) TCGA-W3-AA1R-06 6 29079946 29079946 G A OR2J3 Silent p.K93K 0.25 TCGA-W3-AA1R-06 6 29572378 29572378 C T GABBR1 Missense_Mutation p.E869K 0.30 deleterious(0.05) possibly_damaging(0.64) TCGA-W3-AA1R-06 6 29640373 29640373 G A ZFP57 Silent p.P505P 0.54 TCGA-W3-AA1R-06 6 30071943 30071943 C T TRIM31 Nonsense_Mutation p.W320* 0.33 TCGA-W3-AA1R-06 6 30115501 30115501 G A TRIM40 Splice_Site p.X201_splice 0.19 TCGA-W3-AA1R-06 6 30121890 30121890 A G TRIM10 Silent p.S434S 0.35 TCGA-W3-AA1R-06 6 30134956 30134956 C T TRIM15 Missense_Mutation p.R129C 0.20 deleterious(0) possibly_damaging(0.902) TCGA-W3-AA1R-06 6 30164339 30164339 G A TRIM26 Missense_Mutation p.S240F 0.19 deleterious(0) possibly_damaging(0.905) TCGA-W3-AA1R-06 6 30297294 30297294 C T TRIM39 Missense_Mutation p.P67L 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 30691273 30691273 C T TUBB Missense_Mutation p.S145F 0.53 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-W3-AA1R-06 6 31079573 31079573 C T C6orf15 Missense_Mutation p.G188E 0.40 tolerated(0.27) probably_damaging(0.988) TCGA-W3-AA1R-06 6 31132452 31132452 C T POU5F1 Missense_Mutation p.V337I 0.41 tolerated(0.36) benign(0.097) TCGA-W3-AA1R-06 6 31431366 31431366 G A HCP5 RNA 0.64 TCGA-W3-AA1R-06 6 31599980 31599980 C T PRRC2A Missense_Mutation p.P1177L 0.27 unknown(0) TCGA-W3-AA1R-06 6 31669080 31669080 G A ABHD16A Missense_Mutation p.P76L 0.26 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 6 31692389 31692389 C T C6orf25 Missense_Mutation p.P176S 0.24 tolerated_low_confidence(0.19) possibly_damaging(0.656) TCGA-W3-AA1R-06 6 31692390 31692390 C T C6orf25 Missense_Mutation p.P176L 0.24 tolerated_low_confidence(0.08) benign(0.058) TCGA-W3-AA1R-06 6 31911071 31911071 G A CFB Missense_Mutation p.R324K 0.14 tolerated(0.34) possibly_damaging(0.518) TCGA-W3-AA1R-06 6 31996591 31996591 C T C4B Nonsense_Mutation p.Q1118* 0.43 TCGA-W3-AA1R-06 6 31997573 31997573 C T C4B Nonsense_Mutation p.Q1303* 0.12 TCGA-W3-AA1R-06 6 32008463 32008463 C T CYP21A2 Silent p.I379I 0.21 TCGA-W3-AA1R-06 6 32021249 32021249 C T TNXB Missense_Mutation p.E2901K 0.31 possibly_damaging(0.486) TCGA-W3-AA1R-06 6 32036767 32036767 C T TNXB Missense_Mutation p.E1912K 0.31 benign(0.301) TCGA-W3-AA1R-06 6 32170006 32170006 C T NOTCH4 Missense_Mutation p.G1201E 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 32809430 32809430 G A PSMB8 Missense_Mutation p.A207V 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 6 32974862 32974862 G A HLA-DOA Silent p.V248V 0.37 TCGA-W3-AA1R-06 6 33136754 33136754 G A COL11A2 Missense_Mutation p.P1191L 0.30 unknown(0) TCGA-W3-AA1R-06 6 33140404 33140404 C T COL11A2 Missense_Mutation p.G848E 0.25 probably_damaging(0.969) TCGA-W3-AA1R-06 6 33287200 33287200 G A DAXX Missense_Mutation p.R633W 0.24 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1R-06 6 33653557 33653557 C T ITPR3 Silent p.L1874L 0.37 TCGA-W3-AA1R-06 6 33659670 33659670 G A ITPR3 Missense_Mutation p.G2475S 0.22 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1R-06 6 34029714 34029714 C T GRM4 Silent p.S276S 0.36 TCGA-W3-AA1R-06 6 35387922 35387922 C T PPARD Missense_Mutation p.S50L 0.18 deleterious(0) benign(0.004) TCGA-W3-AA1R-06 6 35715398 35715398 C T ARMC12 Missense_Mutation p.L249F 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-W3-AA1R-06 6 36437948 36437948 T C KCTD20 Missense_Mutation p.L25S 0.24 tolerated_low_confidence(0.71) benign(0) TCGA-W3-AA1R-06 6 36929677 36929677 G A PI16 Silent p.G173G 0.22 TCGA-W3-AA1R-06 6 37622705 37622705 C T MDGA1 Missense_Mutation p.E195K 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1R-06 6 38950232 38950232 T C DNAH8 Silent p.I4098I 0.32 TCGA-W3-AA1R-06 6 39278758 39278758 C T KCNK17 Missense_Mutation p.G88E 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 4044126 4044126 G A PRPF4B Missense_Mutation p.R577Q 0.35 tolerated(0.05) unknown(0) TCGA-W3-AA1R-06 6 41021154 41021154 A G APOBEC2 Missense_Mutation p.N23S 0.33 tolerated_low_confidence(0.22) benign(0.005) TCGA-W3-AA1R-06 6 42146982 42146982 G A GUCA1A Silent p.G149G 0.35 TCGA-W3-AA1R-06 6 42237158 42237158 G A TRERF1 Silent p.F57F 0.26 TCGA-W3-AA1R-06 6 42574342 42574342 C T UBR2 Nonsense_Mutation p.R273* 0.28 TCGA-W3-AA1R-06 6 43097986 43097986 C T PTK7 Silent p.F171F 0.23 TCGA-W3-AA1R-06 6 43266304 43266304 C T SLC22A7 Missense_Mutation p.P70S 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 6 43270429 43270429 G A SLC22A7 Missense_Mutation p.G438E 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 44137169 44137169 C T CAPN11 Silent p.F80F 0.19 TCGA-W3-AA1R-06 6 44195002 44195002 C T SLC29A1 5'UTR 0.52 TCGA-W3-AA1R-06 6 44250280 44250280 C T TCTE1 Missense_Mutation p.R288Q 0.39 tolerated(0.21) benign(0.088) TCGA-W3-AA1R-06 6 44376237 44376237 A G CDC5L Silent p.A320A 0.42 TCGA-W3-AA1R-06 6 47252101 47252101 T A TNFRSF21 Missense_Mutation p.E272D 0.39 tolerated(0.2) benign(0.003) TCGA-W3-AA1R-06 6 47649054 47649054 G A GPR111 Nonsense_Mutation p.W253* 0.42 TCGA-W3-AA1R-06 6 47649301 47649301 C T GPR111 Missense_Mutation p.P336S 0.33 tolerated(0.48) benign(0.018) TCGA-W3-AA1R-06 6 47649303 47649303 T G GPR111 Silent p.P336P 0.52 TCGA-W3-AA1R-06 6 47678579 47678579 C T GPR115 Missense_Mutation p.S86L 0.43 tolerated(0.38) benign(0.018) TCGA-W3-AA1R-06 6 47846512 47846512 G A PTCHD4 Missense_Mutation p.L690F 0.45 deleterious(0) possibly_damaging(0.681) TCGA-W3-AA1R-06 6 47846825 47846825 G A PTCHD4 Silent p.F585F 0.40 TCGA-W3-AA1R-06 6 49583382 49583382 C T RHAG Missense_Mutation p.E199K 0.36 tolerated(0.45) benign(0.002) TCGA-W3-AA1R-06 6 49660382 49660382 G A CRISP2 3'UTR 0.60 TCGA-W3-AA1R-06 6 49660416 49660416 C T CRISP2 3'UTR 0.41 TCGA-W3-AA1R-06 6 51917904 51917904 C T PKHD1 Missense_Mutation p.E704K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 6 53986347 53986347 C T MLIP Missense_Mutation p.L56F 0.33 deleterious(0) possibly_damaging(0.666) TCGA-W3-AA1R-06 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.35 deleterious(0) probably_damaging(0.91) TCGA-W3-AA1R-06 6 54804651 54804651 G A FAM83B Silent p.V294V 0.41 TCGA-W3-AA1R-06 6 55443848 55443848 C T HMGCLL1 Silent p.G2G 0.39 TCGA-W3-AA1R-06 6 56006596 56006596 C T COL21A1 Missense_Mutation p.R510Q 0.32 tolerated(0.51) benign(0.147) TCGA-W3-AA1R-06 6 56047361 56047361 G A COL21A1 Missense_Mutation p.S19F 0.52 tolerated(0.7) benign(0.001) TCGA-W3-AA1R-06 6 7230628 7230628 C T RREB1 Missense_Mutation p.R766C 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 6 76024407 76024407 C T FILIP1 Missense_Mutation p.E381K 0.57 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 6 76024408 76024408 C T FILIP1 Silent p.V380V 0.57 TCGA-W3-AA1R-06 6 76660777 76660777 G A IMPG1 Silent p.T442T 0.77 TCGA-W3-AA1R-06 6 79675668 79675668 T A PHIP Missense_Mutation p.N1104I 0.64 tolerated(0.3) possibly_damaging(0.88) TCGA-W3-AA1R-06 6 80749551 80749551 C T TTK Missense_Mutation p.P757S 0.62 deleterious(0.01) possibly_damaging(0.619) TCGA-W3-AA1R-06 6 80877461 80877461 C T BCKDHB Missense_Mutation p.A137V 0.06 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1R-06 6 8102755 8102755 C T EEF1E1 5'UTR 0.21 TCGA-W3-AA1R-06 6 82906032 82906032 G A IBTK Missense_Mutation p.H1053Y 0.62 tolerated(0.24) benign(0.025) TCGA-W3-AA1R-06 6 84375166 84375166 C T SNAP91 Missense_Mutation p.G89R 0.76 deleterious(0) unknown(0) TCGA-W3-AA1R-06 6 87725960 87725960 C T HTR1E Missense_Mutation p.S303F 0.68 deleterious(0) possibly_damaging(0.633) TCGA-W3-AA1R-06 6 88763698 88763698 C T SPACA1 Silent p.F81F 0.67 TCGA-W3-AA1R-06 6 90340410 90340410 G A ANKRD6 Missense_Mutation p.G624E 0.70 tolerated(0.07) benign(0.279) TCGA-W3-AA1R-06 7 100087072 100087072 C T NYAP1 Silent p.G576G 0.55 TCGA-W3-AA1R-06 7 100198524 100198524 C T FBXO24 3'UTR 0.51 TCGA-W3-AA1R-06 7 100198525 100198525 C T FBXO24 3'UTR 0.52 TCGA-W3-AA1R-06 7 100388587 100388587 G A ZAN Missense_Mutation p.E2460K 0.72 unknown(0) TCGA-W3-AA1R-06 7 100551864 100551864 C T MUC3A Silent p.L205L 0.22 TCGA-W3-AA1R-06 7 100678179 100678179 C T MUC17 Missense_Mutation p.P1161L 0.64 unknown(0) TCGA-W3-AA1R-06 7 100683723 100683723 G A MUC17 Missense_Mutation p.R3009K 0.66 benign(0.011) TCGA-W3-AA1R-06 7 100686828 100686828 C T MUC17 Missense_Mutation p.P4044L 0.60 benign(0.134) TCGA-W3-AA1R-06 7 100844215 100844215 C A MOGAT3 5'UTR 0.27 TCGA-W3-AA1R-06 7 101891713 101891713 G A CUX1 Silent p.L1314L 0.76 TCGA-W3-AA1R-06 7 103191711 103191711 G A RELN Silent p.S2035S 0.71 TCGA-W3-AA1R-06 7 105660868 105660868 C T CDHR3 Missense_Mutation p.P568L 0.57 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 105893578 105893578 G A NAMPT Missense_Mutation p.P417L 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 107314662 107314662 C T SLC26A4 Missense_Mutation p.P157S 0.59 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1R-06 7 107427911 107427911 G A SLC26A3 Missense_Mutation p.A260V 0.20 deleterious(0.04) probably_damaging(0.981) TCGA-W3-AA1R-06 7 110764051 110764051 G A LRRN3 Missense_Mutation p.R408Q 0.33 tolerated(0.19) possibly_damaging(0.866) TCGA-W3-AA1R-06 7 111430560 111430560 G A DOCK4 Missense_Mutation p.H1090Y 0.16 tolerated(0.32) possibly_damaging(0.703) TCGA-W3-AA1R-06 7 113518806 113518806 C T PPP1R3A Missense_Mutation p.D781N 0.61 deleterious(0.03) possibly_damaging(0.881) TCGA-W3-AA1R-06 7 113519928 113519928 C T PPP1R3A Missense_Mutation p.E407K 0.29 tolerated(0.21) benign(0.03) TCGA-W3-AA1R-06 7 114298149 114298149 C T FOXP2 Missense_Mutation p.S457L 0.29 tolerated(0.13) unknown(0) TCGA-W3-AA1R-06 7 11446008 11446008 C T THSD7A Missense_Mutation p.E1386K 0.57 tolerated(0.13) probably_damaging(0.95) TCGA-W3-AA1R-06 7 11676464 11676464 G A THSD7A Silent p.P105P 0.25 TCGA-W3-AA1R-06 7 117067469 117067469 C T ASZ1 Missense_Mutation p.E16K 0.53 deleterious(0.01) probably_damaging(0.986) TCGA-W3-AA1R-06 7 117232462 117232462 G A CFTR Silent p.A747A 0.61 TCGA-W3-AA1R-06 7 119915758 119915758 C T KCND2 Missense_Mutation p.P358S 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 123267245 123267245 C T ASB15 Missense_Mutation p.S260F 0.76 deleterious(0) possibly_damaging(0.608) TCGA-W3-AA1R-06 7 123594419 123594419 G A SPAM1 Silent p.L265L 0.79 TCGA-W3-AA1R-06 7 123599600 123599600 C T SPAM1 Silent p.V369V 0.73 TCGA-W3-AA1R-06 7 127239595 127239595 C T FSCN3 Silent p.Y427Y 0.60 TCGA-W3-AA1R-06 7 128658056 128658056 G A TNPO3 Silent p.T92T 0.74 TCGA-W3-AA1R-06 7 129989935 129989935 G A CPA5 Missense_Mutation p.M106I 0.21 deleterious(0.04) possibly_damaging(0.841) TCGA-W3-AA1R-06 7 130040639 130040639 G A CEP41 Silent p.I222I 0.85 TCGA-W3-AA1R-06 7 130138081 130138081 C T MEST Silent p.D147D 0.17 TCGA-W3-AA1R-06 7 132192613 132192613 G A PLXNA4 Silent p.L280L 0.12 TCGA-W3-AA1R-06 7 133979784 133979784 G A SLC35B4 Missense_Mutation p.S266F 0.68 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 7 134222978 134222978 G A AKR1B10 Silent p.V258V 0.69 TCGA-W3-AA1R-06 7 138189111 138189111 C T TRIM24 Silent p.D147D 0.48 TCGA-W3-AA1R-06 7 138429989 138429989 G A ATP6V0A4 Silent p.L453L 0.69 TCGA-W3-AA1R-06 7 139790936 139790936 G A KDM7A Silent p.I928I 0.14 TCGA-W3-AA1R-06 7 140273608 140273608 C T DENND2A Silent p.K482K 0.11 TCGA-W3-AA1R-06 7 140273630 140273630 C T DENND2A Missense_Mutation p.R475K 0.77 tolerated(0.11) benign(0.012) TCGA-W3-AA1R-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.65 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1R-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.65 deleterious(0) possibly_damaging(0.838) TCGA-W3-AA1R-06 7 141385336 141385336 G A KIAA1147 Missense_Mutation p.L157F 0.09 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1R-06 7 141430132 141430132 G A WEE2 3'UTR 0.15 TCGA-W3-AA1R-06 7 141629898 141629898 C T CLEC5A 3'UTR 0.10 TCGA-W3-AA1R-06 7 141672994 141672994 G A TAS2R38 Missense_Mutation p.P166S 0.75 tolerated(1) benign(0) TCGA-W3-AA1R-06 7 141752785 141752785 G A MGAM Splice_Site p.X1053_splice 0.75 TCGA-W3-AA1R-06 7 141754666 141754666 C T MGAM Missense_Mutation p.P1091L 0.12 deleterious(0) possibly_damaging(0.835) TCGA-W3-AA1R-06 7 141957573 141957573 G A PRSS58 5'UTR 0.77 TCGA-W3-AA1R-06 7 142001108 142001108 C T TRBV2 Missense_Mutation p.S34F 0.23 TCGA-W3-AA1R-06 7 142013013 142013013 C T TRBV4-1 5'UTR 0.10 TCGA-W3-AA1R-06 7 142021328 142021328 G A TRBV5-1 Missense_Mutation p.G103E 0.72 tolerated(0.47) benign(0.029) TCGA-W3-AA1R-06 7 142028214 142028214 C T TRBV6-1 Missense_Mutation p.L13F 0.13 tolerated(0.21) benign(0.074) TCGA-W3-AA1R-06 7 142099890 142099890 C T TRBV7-8 Missense_Mutation p.D17N 0.73 tolerated(0.23) benign(0.009) TCGA-W3-AA1R-06 7 142099900 142099900 G A TRBV7-8 Silent p.F13F 0.72 TCGA-W3-AA1R-06 7 142448732 142448732 G A TRBV29-1 Missense_Mutation p.S109N 0.36 deleterious(0.02) probably_damaging(0.928) TCGA-W3-AA1R-06 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.09 TCGA-W3-AA1R-06 7 142499627 142499627 G A TRBC2 Splice_Site p.X130_splice 0.31 TCGA-W3-AA1R-06 7 142919423 142919423 C T TAS2R40 Silent p.F84F 0.25 TCGA-W3-AA1R-06 7 142919792 142919792 C T TAS2R40 Silent p.I207I 0.30 TCGA-W3-AA1R-06 7 143057242 143057242 C T FAM131B Missense_Mutation p.G10E 0.42 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-W3-AA1R-06 7 143175763 143175763 G A TAS2R41 Nonsense_Mutation p.W266* 0.46 TCGA-W3-AA1R-06 7 143771462 143771462 G A OR2A25 Silent p.L50L 0.24 TCGA-W3-AA1R-06 7 143771463 143771463 G C OR2A25 Missense_Mutation p.D51H 0.25 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1R-06 7 143792421 143792421 C T OR2A12 Missense_Mutation p.S74L 0.31 deleterious(0.01) possibly_damaging(0.598) TCGA-W3-AA1R-06 7 144098156 144098156 C T NOBOX Missense_Mutation p.R276Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 7 146471454 146471454 C T CNTNAP2 Silent p.A63A 0.33 TCGA-W3-AA1R-06 7 148769522 148769522 G A ZNF786 Silent p.F114F 0.27 TCGA-W3-AA1R-06 7 148801440 148801440 G A ZNF425 Missense_Mutation p.S508F 0.61 tolerated(0.51) possibly_damaging(0.689) TCGA-W3-AA1R-06 7 149318390 149318390 G A ZNF767 RNA 0.37 TCGA-W3-AA1R-06 7 149419882 149419882 C T KRBA1 Missense_Mutation p.P203S 0.28 tolerated(0.13) probably_damaging(0.986) TCGA-W3-AA1R-06 7 149497503 149497503 G A SSPO RNA 0.35 TCGA-W3-AA1R-06 7 150217156 150217156 G A GIMAP7 Missense_Mutation p.E32K 0.38 tolerated(1) benign(0.004) TCGA-W3-AA1R-06 7 150325446 150325446 C T GIMAP6 Silent p.Q80Q 0.53 TCGA-W3-AA1R-06 7 151135100 151135100 G A CRYGN Silent p.S84S 0.12 TCGA-W3-AA1R-06 7 151699946 151699946 C T GALNTL5 Missense_Mutation p.S269F 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-W3-AA1R-06 7 154598797 154598797 G A DPP6 Missense_Mutation p.M547I 0.53 tolerated(0.4) benign(0.098) TCGA-W3-AA1R-06 7 154876126 154876126 C T HTR5A Missense_Mutation p.P335S 0.27 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 7 154876259 154876259 C T HTR5A 3'UTR 0.30 TCGA-W3-AA1R-06 7 155604595 155604595 C T SHH Silent p.K74K 0.27 TCGA-W3-AA1R-06 7 158827272 158827272 G A VIPR2 Silent p.I293I 0.54 TCGA-W3-AA1R-06 7 16823186 16823186 C T TSPAN13 3'UTR 0.22 TCGA-W3-AA1R-06 7 20739546 20739546 C T ABCB5 Silent p.F751F 0.67 TCGA-W3-AA1R-06 7 21775380 21775380 T A DNAH11 Silent p.G2528G 0.65 TCGA-W3-AA1R-06 7 22196479 22196479 G A RAPGEF5 Missense_Mutation p.L376F 0.18 tolerated(0.1) possibly_damaging(0.851) TCGA-W3-AA1R-06 7 2265141 2265141 G A MAD1L1 Silent p.I65I 0.52 TCGA-W3-AA1R-06 7 2281856 2281856 C T NUDT1 5'Flank 0.50 TCGA-W3-AA1R-06 7 23018016 23018016 C T FAM126A Missense_Mutation p.E69K 0.33 tolerated(0.59) benign(0.006) TCGA-W3-AA1R-06 7 23827725 23827725 G A STK31 Missense_Mutation p.D872N 0.56 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 23871932 23871932 T C STK31 Silent p.L1003L 0.36 TCGA-W3-AA1R-06 7 2583250 2583250 G A BRAT1 Silent p.F259F 0.64 TCGA-W3-AA1R-06 7 27671982 27671982 G A HIBADH Missense_Mutation p.A112V 0.22 tolerated(1) benign(0.002) TCGA-W3-AA1R-06 7 28763893 28763893 C T CREB5 Missense_Mutation p.L216F 0.68 tolerated(0.71) possibly_damaging(0.806) TCGA-W3-AA1R-06 7 28848898 28848898 C T CREB5 Missense_Mutation p.P374L 0.18 deleterious(0) unknown(0) TCGA-W3-AA1R-06 7 31614288 31614288 G A CCDC129 Missense_Mutation p.G203E 0.66 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 34192733 34192733 G A BMPER Missense_Mutation p.D636N 0.20 deleterious(0.05) possibly_damaging(0.824) TCGA-W3-AA1R-06 7 39504072 39504072 C T POU6F2 Silent p.I621I 0.17 TCGA-W3-AA1R-06 7 40900108 40900108 C T SUGCT 3'UTR 0.18 TCGA-W3-AA1R-06 7 4272926 4272926 G A SDK1 Missense_Mutation p.R1956Q 0.52 tolerated(0.27) benign(0.046) TCGA-W3-AA1R-06 7 4281527 4281527 C T SDK1 Missense_Mutation p.S2078F 0.58 tolerated(0.05) benign(0.14) TCGA-W3-AA1R-06 7 43351635 43351635 G A HECW1 Missense_Mutation p.D101N 0.70 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1R-06 7 44102458 44102458 C T PGAM2 Missense_Mutation p.E223K 0.17 deleterious(0.03) benign(0) TCGA-W3-AA1R-06 7 44620746 44620746 G A TMED4 Silent p.A160A 0.25 TCGA-W3-AA1R-06 7 44806049 44806049 T C ZMIZ2 Silent p.T814T 0.66 TCGA-W3-AA1R-06 7 48056936 48056936 C T SUN3 Missense_Mutation p.E71K 0.44 deleterious_low_confidence(0.04) benign(0.219) TCGA-W3-AA1R-06 7 48564026 48564026 C T ABCA13 Missense_Mutation p.P4745L 0.13 possibly_damaging(0.575) TCGA-W3-AA1R-06 7 4917589 4917589 G A RADIL Missense_Mutation p.A61V 0.28 tolerated(0.22) possibly_damaging(0.767) TCGA-W3-AA1R-06 7 50537839 50537839 G A DDC Missense_Mutation p.R358C 0.53 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 50660575 50660575 T C GRB10 3'UTR 0.26 TCGA-W3-AA1R-06 7 50683979 50683979 C T GRB10 Silent p.K304K 0.70 TCGA-W3-AA1R-06 7 5103631 5103631 C T RBAK Nonsense_Mutation p.Q182* 0.34 TCGA-W3-AA1R-06 7 5103800 5103800 C T RBAK Missense_Mutation p.S238F 0.29 tolerated(0.68) probably_damaging(0.949) TCGA-W3-AA1R-06 7 51093056 51093056 G T COBL Missense_Mutation p.A1173D 0.12 deleterious(0) probably_damaging(0.943) TCGA-W3-AA1R-06 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.17 TCGA-W3-AA1R-06 7 53104343 53104343 C T POM121L12 3'UTR 0.68 TCGA-W3-AA1R-06 7 5352374 5352374 G A TNRC18 Silent p.S2716S 0.24 TCGA-W3-AA1R-06 7 54617801 54617801 G A VSTM2A Missense_Mutation p.R191Q 0.59 tolerated(0.12) benign(0.003) TCGA-W3-AA1R-06 7 55496091 55496091 C T LANCL2 Silent p.Y403Y 0.56 TCGA-W3-AA1R-06 7 57188161 57188161 C T ZNF479 Missense_Mutation p.G321R 0.17 tolerated(0.06) possibly_damaging(0.711) TCGA-W3-AA1R-06 7 57528932 57528932 C T ZNF716 Silent p.S255S 0.65 TCGA-W3-AA1R-06 7 5922206 5922206 C T OCM Silent p.F48F 0.23 TCGA-W3-AA1R-06 7 6017261 6017261 G A PMS2 Silent p.S801S 0.11 TCGA-W3-AA1R-06 7 6026987 6026987 G A PMS2 Missense_Mutation p.P470L 0.20 deleterious(0.04) benign(0.071) TCGA-W3-AA1R-06 7 6054804 6054804 C T AIMP2 Missense_Mutation p.L55F 0.69 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 62752337 62752337 C T ZNF733P RNA 0.57 TCGA-W3-AA1R-06 7 63726480 63726480 C T ZNF679 Nonsense_Mutation p.Q157* 0.52 TCGA-W3-AA1R-06 7 64467085 64467085 G A ERV3-1 5'Flank 0.21 TCGA-W3-AA1R-06 7 6776773 6776773 C T PMS2CL RNA 0.43 TCGA-W3-AA1R-06 7 70255877 70255877 C T AUTS2 Silent p.S1225S 0.55 TCGA-W3-AA1R-06 7 71036340 71036340 C T WBSCR17 Missense_Mutation p.P345S 0.16 tolerated(0.41) benign(0.003) TCGA-W3-AA1R-06 7 72657498 72657498 C T GTF2IRD2P1 RNA 0.18 TCGA-W3-AA1R-06 7 72657724 72657724 C T GTF2IRD2P1 RNA 0.21 TCGA-W3-AA1R-06 7 72658600 72658600 T A GTF2IRD2P1 RNA 0.34 TCGA-W3-AA1R-06 7 72745717 72745717 G A FKBP6 Missense_Mutation p.E176K 0.25 tolerated(0.07) benign(0.06) TCGA-W3-AA1R-06 7 73944161 73944161 C T GTF2IRD1 Silent p.I428I 0.72 TCGA-W3-AA1R-06 7 74564231 74564231 C T GTF2IRD2B Missense_Mutation p.L660F 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-W3-AA1R-06 7 7530240 7530240 C T COL28A1 Missense_Mutation p.G355E 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 7 82545021 82545021 A T PCLO Missense_Mutation p.F4094Y 0.79 unknown(0) TCGA-W3-AA1R-06 7 82546003 82546003 C T PCLO Missense_Mutation p.D3767N 0.27 unknown(0) TCGA-W3-AA1R-06 7 82581736 82581736 G A PCLO Missense_Mutation p.P2845S 0.58 unknown(0) TCGA-W3-AA1R-06 7 82585287 82585287 C T PCLO Missense_Mutation p.G1661E 0.14 unknown(0) TCGA-W3-AA1R-06 7 82585967 82585967 C T PCLO Silent p.K1434K 0.65 TCGA-W3-AA1R-06 7 82595331 82595331 T G PCLO Missense_Mutation p.E1258A 0.20 unknown(0) TCGA-W3-AA1R-06 7 82595462 82595462 G A PCLO Silent p.L1214L 0.18 TCGA-W3-AA1R-06 7 86509819 86509819 G A KIAA1324L Nonsense_Mutation p.Q1020* 0.21 TCGA-W3-AA1R-06 7 87174203 87174203 G A ABCB1 Missense_Mutation p.S667L 0.23 deleterious(0.03) benign(0.006) TCGA-W3-AA1R-06 7 87778295 87778295 C T ADAM22 Nonsense_Mutation p.Q497* 0.21 TCGA-W3-AA1R-06 7 89900946 89900946 G A C7orf63 Silent p.E213E 0.29 TCGA-W3-AA1R-06 7 91726092 91726092 C A AKAP9 Silent p.S3273S 0.18 TCGA-W3-AA1R-06 7 91726093 91726093 C T AKAP9 Nonsense_Mutation p.Q3274* 0.19 TCGA-W3-AA1R-06 7 92146910 92146910 G A PEX1 Missense_Mutation p.H307Y 0.22 tolerated(0.58) benign(0.053) TCGA-W3-AA1R-06 7 92760771 92760771 G A SAMD9L Missense_Mutation p.S1505F 0.64 tolerated(0.12) benign(0.02) TCGA-W3-AA1R-06 7 92826700 92826700 C T HEPACAM2 Silent p.Q383Q 0.21 TCGA-W3-AA1R-06 7 93055620 93055620 C T CALCR 3'UTR 0.58 TCGA-W3-AA1R-06 7 93516621 93516621 C T TFPI2 Missense_Mutation p.D195N 0.64 tolerated(0.44) benign(0.299) TCGA-W3-AA1R-06 7 94898629 94898629 G A PPP1R9A Silent p.V978V 0.32 TCGA-W3-AA1R-06 7 96747073 96747073 A T ACN9 Missense_Mutation p.Y13F 0.56 deleterious(0.01) probably_damaging(0.954) TCGA-W3-AA1R-06 7 98591321 98591321 C T TRRAP Silent p.V3322V 0.32 TCGA-W3-AA1R-06 7 99474522 99474522 G A OR2AE1 Silent p.T45T 0.28 TCGA-W3-AA1R-06 7 99573580 99573580 C T AZGP1 Missense_Mutation p.E22K 0.23 tolerated(0.35) benign(0.001) TCGA-W3-AA1R-06 7 99997559 99997559 G A PILRA 3'UTR 0.23 TCGA-W3-AA1R-06 8 101195603 101195603 G A SPAG1 Missense_Mutation p.E143K 0.37 tolerated(0.41) benign(0) TCGA-W3-AA1R-06 8 101541941 101541941 G A ANKRD46 Missense_Mutation p.R41C 0.45 deleterious(0.03) benign(0.42) TCGA-W3-AA1R-06 8 103311682 103311682 G A UBR5 Missense_Mutation p.P1067L 0.36 tolerated(0.56) benign(0.024) TCGA-W3-AA1R-06 8 103339981 103339981 A G UBR5 Silent p.S490S 0.31 TCGA-W3-AA1R-06 8 104898118 104898118 C A RIMS2 Missense_Mutation p.H431N 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.583) TCGA-W3-AA1R-06 8 105361308 105361308 C T DCSTAMP Silent p.F176F 0.59 TCGA-W3-AA1R-06 8 106814249 106814249 T A ZFPM2 Missense_Mutation p.S647T 0.42 tolerated(0.81) benign(0) TCGA-W3-AA1R-06 8 109797354 109797354 G A TMEM74 5'UTR 0.55 TCGA-W3-AA1R-06 8 110420353 110420353 G A PKHD1L1 Missense_Mutation p.G630E 0.29 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1R-06 8 110454311 110454311 A T PKHD1L1 Missense_Mutation p.Q1427L 0.36 deleterious(0.03) benign(0.034) TCGA-W3-AA1R-06 8 110454319 110454319 C T PKHD1L1 Missense_Mutation p.P1430S 0.37 deleterious(0.04) benign(0.205) TCGA-W3-AA1R-06 8 110530657 110530657 G A PKHD1L1 Missense_Mutation p.R3984K 0.41 deleterious(0) possibly_damaging(0.53) TCGA-W3-AA1R-06 8 110592247 110592247 G A SYBU Intron 0.46 TCGA-W3-AA1R-06 8 110980599 110980599 G A KCNV1 Silent p.I407I 0.50 TCGA-W3-AA1R-06 8 11188790 11188790 C T SLC35G5 Missense_Mutation p.R59C 0.62 deleterious(0.05) benign(0.147) TCGA-W3-AA1R-06 8 113299304 113299304 G A CSMD3 Missense_Mutation p.P3107L 0.32 deleterious(0.03) possibly_damaging(0.846) TCGA-W3-AA1R-06 8 113403005 113403005 C T CSMD3 Missense_Mutation p.G1941E 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1R-06 8 113668388 113668388 T C CSMD3 Missense_Mutation p.Y1000C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1R-06 8 114326842 114326842 G A CSMD3 Missense_Mutation p.S120L 0.31 tolerated(0.06) benign(0.071) TCGA-W3-AA1R-06 8 118175744 118175744 G A SLC30A8 Silent p.K268K 0.12 TCGA-W3-AA1R-06 8 121219214 121219214 G A COL14A1 Missense_Mutation p.E358K 0.45 deleterious(0.03) benign(0.202) TCGA-W3-AA1R-06 8 121292969 121292969 G A COL14A1 Silent p.K1222K 0.15 TCGA-W3-AA1R-06 8 121475988 121475988 C T MTBP Missense_Mutation p.S345F 0.33 tolerated(0.09) probably_damaging(0.955) TCGA-W3-AA1R-06 8 124094986 124094986 C T TBC1D31 Missense_Mutation p.A90V 0.36 tolerated(0.07) possibly_damaging(0.688) TCGA-W3-AA1R-06 8 124094987 124094987 C T TBC1D31 Silent p.A90A 0.36 TCGA-W3-AA1R-06 8 124368679 124368679 T A ATAD2 Missense_Mutation p.E532D 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 8 124992888 124992888 C T FER1L6 Missense_Mutation p.S416F 0.38 deleterious(0) probably_damaging(0.942) TCGA-W3-AA1R-06 8 125025757 125025757 C T FER1L6 Silent p.F636F 0.27 TCGA-W3-AA1R-06 8 125076635 125076635 T C FER1L6 Missense_Mutation p.S1126P 0.49 tolerated(0.35) benign(0.003) TCGA-W3-AA1R-06 8 131792683 131792683 C T ADCY8 Missense_Mutation p.E1237K 0.40 deleterious_low_confidence(0.03) benign(0.001) TCGA-W3-AA1R-06 8 134063103 134063103 G A SLA Missense_Mutation p.P80L 0.38 tolerated(0.08) possibly_damaging(0.903) TCGA-W3-AA1R-06 8 139165102 139165102 C T FAM135B Missense_Mutation p.R539K 0.50 tolerated(0.49) benign(0.003) TCGA-W3-AA1R-06 8 139165439 139165439 G A FAM135B Missense_Mutation p.P427S 0.53 tolerated(0.12) benign(0.04) TCGA-W3-AA1R-06 8 142486051 142486051 C A MROH5 Intron 0.23 TCGA-W3-AA1R-06 8 143999085 143999085 C T CYP11B2 Missense_Mutation p.E58K 0.45 tolerated(0.14) benign(0.219) TCGA-W3-AA1R-06 8 144940261 144940261 G A EPPK1 Silent p.F2387F 0.03 TCGA-W3-AA1R-06 8 144946751 144946751 G A EPPK1 Missense_Mutation p.S224L 0.27 benign(0.003) TCGA-W3-AA1R-06 8 145112505 145112505 G A OPLAH Missense_Mutation p.S423F 0.56 deleterious(0) probably_damaging(0.951) TCGA-W3-AA1R-06 8 1513910 1513910 G A DLGAP2 Missense_Mutation p.R351K 0.75 deleterious(0.01) possibly_damaging(0.651) TCGA-W3-AA1R-06 8 1513911 1513911 G A DLGAP2 Silent p.R351R 0.71 TCGA-W3-AA1R-06 8 15601095 15601095 C T TUSC3 Missense_Mutation p.S304L 0.82 deleterious(0.02) possibly_damaging(0.657) TCGA-W3-AA1R-06 8 16035443 16035443 C T MSR1 Missense_Mutation p.E19K 0.60 deleterious(0.01) possibly_damaging(0.684) TCGA-W3-AA1R-06 8 17418042 17418042 G A SLC7A2 Missense_Mutation p.A542T 0.67 deleterious(0.04) possibly_damaging(0.477) TCGA-W3-AA1R-06 8 17919882 17919882 A G ASAH1 Missense_Mutation p.L201S 0.72 tolerated(0.06) possibly_damaging(0.73) TCGA-W3-AA1R-06 8 21891761 21891761 C T NPM2 Missense_Mutation p.P169L 0.77 tolerated(0.06) benign(0.086) TCGA-W3-AA1R-06 8 21891762 21891762 C T NPM2 Silent p.P169P 0.77 TCGA-W3-AA1R-06 8 21903638 21903638 C T FGF17 Missense_Mutation p.P29L 0.64 tolerated(0.27) benign(0.122) TCGA-W3-AA1R-06 8 21978720 21978720 G A HR Missense_Mutation p.T742I 0.84 tolerated(0.19) benign(0.365) TCGA-W3-AA1R-06 8 23191083 23191083 G A LOXL2 Missense_Mutation p.T266I 0.52 tolerated(0.15) benign(0.102) TCGA-W3-AA1R-06 8 24256431 24256431 A C ADAMDEC1 Missense_Mutation p.E269D 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 8 27321137 27321137 G A CHRNA2 Missense_Mutation p.P275S 0.77 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 8 27516105 27516105 C T SCARA3 Nonsense_Mutation p.Q140* 0.75 TCGA-W3-AA1R-06 8 30705003 30705003 C T TEX15 Missense_Mutation p.E511K 0.74 tolerated(1) benign(0.002) TCGA-W3-AA1R-06 8 3224700 3224700 C T CSMD1 Missense_Mutation p.G990E 0.64 probably_damaging(0.962) TCGA-W3-AA1R-06 8 32599581 32599581 C T NRG1 Intron 0.85 TCGA-W3-AA1R-06 8 39604026 39604026 C T ADAM2 Silent p.R713R 0.67 TCGA-W3-AA1R-06 8 55534750 55534750 G A RP1 Missense_Mutation p.G230E 0.68 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1R-06 8 55538613 55538613 G A RP1 Missense_Mutation p.G724E 0.72 tolerated(0.99) benign(0.002) TCGA-W3-AA1R-06 8 57354068 57354068 G A PENK Silent p.F189F 0.68 TCGA-W3-AA1R-06 8 66963879 66963879 G A DNAJC5B Missense_Mutation p.E33K 0.48 deleterious(0.01) possibly_damaging(0.597) TCGA-W3-AA1R-06 8 72211313 72211313 G A EYA1 Silent p.I265I 0.24 TCGA-W3-AA1R-06 8 73480002 73480002 G A KCNB2 Silent p.R11R 0.38 TCGA-W3-AA1R-06 8 73849824 73849824 C T KCNB2 Missense_Mutation p.S745L 0.47 tolerated_low_confidence(0.24) benign(0.028) TCGA-W3-AA1R-06 8 85441713 85441727 GTTCACAAAGGTTAT - RALYL In_Frame_Del p.V66_Y70del 0.21 TCGA-W3-AA1R-06 8 86041442 86041442 C T LRRCC1 Missense_Mutation p.S485F 0.26 deleterious(0.02) benign(0.308) TCGA-W3-AA1R-06 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.27 deleterious(0.03) possibly_damaging(0.564) TCGA-W3-AA1R-06 8 87751964 87751964 C T CNGB3 Missense_Mutation p.E44K 0.33 tolerated(0.67) benign(0.038) TCGA-W3-AA1R-06 8 89128840 89128840 G A MMP16 Missense_Mutation p.R327W 0.25 tolerated(0.05) benign(0.017) TCGA-W3-AA1R-06 8 8998360 8998360 G A PPP1R3B Silent p.L268L 0.45 TCGA-W3-AA1R-06 8 92364064 92364064 C T SLC26A7 Silent p.F389F 0.46 TCGA-W3-AA1R-06 8 93017410 93017410 G A RUNX1T1 Missense_Mutation p.S236L 0.48 deleterious(0.02) possibly_damaging(0.803) TCGA-W3-AA1R-06 8 99101993 99101993 G A C8orf47 Missense_Mutation p.G250R 0.46 tolerated(0.06) benign(0.002) TCGA-W3-AA1R-06 8 99961470 99961470 C T OSR2 Missense_Mutation p.P97L 0.38 deleterious_low_confidence(0.03) benign(0) TCGA-W3-AA1R-06 9 101788242 101788242 G A COL15A1 Silent p.G679G 0.88 TCGA-W3-AA1R-06 9 103055144 103055144 G A INVS Missense_Mutation p.E869K 0.65 tolerated_low_confidence(0.26) benign(0.079) TCGA-W3-AA1R-06 9 104187149 104187149 C T ALDOB Silent p.Q325Q 0.74 TCGA-W3-AA1R-06 9 104335507 104335507 C T GRIN3A Silent p.R1099R 0.47 TCGA-W3-AA1R-06 9 104357149 104357149 C T PPP3R2 Missense_Mutation p.E22K 0.67 deleterious(0) possibly_damaging(0.62) TCGA-W3-AA1R-06 9 107380089 107380089 G A OR13C9 Missense_Mutation p.P133S 0.74 tolerated(0.17) benign(0.002) TCGA-W3-AA1R-06 9 108370128 108370128 G A FKTN Missense_Mutation p.G226R 0.74 deleterious(0) possibly_damaging(0.889) TCGA-W3-AA1R-06 9 112900780 112900780 C T PALM2-AKAP2 Missense_Mutation p.P986S 0.88 tolerated(0.52) benign(0.012) TCGA-W3-AA1R-06 9 113149654 113149654 G A SVEP1 Missense_Mutation p.S3324F 0.72 benign(0.033) TCGA-W3-AA1R-06 9 113173606 113173606 C T SVEP1 Missense_Mutation p.G2129S 0.55 probably_damaging(1) TCGA-W3-AA1R-06 9 113261359 113261359 C T SVEP1 Missense_Mutation p.G548E 0.71 probably_damaging(0.999) TCGA-W3-AA1R-06 9 113265461 113265461 C T SVEP1 Missense_Mutation p.G447D 0.61 probably_damaging(0.973) TCGA-W3-AA1R-06 9 114090001 114090001 G A OR2K2 Missense_Mutation p.S238F 0.67 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1R-06 9 115760101 115760101 G A ZNF883 RNA 0.62 TCGA-W3-AA1R-06 9 116811235 116811235 C T ZNF618 Silent p.V458V 0.60 TCGA-W3-AA1R-06 9 117797608 117797608 C T TNC Missense_Mutation p.D1888N 0.74 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1R-06 9 117835986 117835986 G A TNC Missense_Mutation p.S1037F 0.73 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1R-06 9 118974028 118974028 G A PAPPA Missense_Mutation p.E579K 0.56 deleterious(0) possibly_damaging(0.621) TCGA-W3-AA1R-06 9 119802102 119802102 T G ASTN2 Silent p.A422A 0.71 TCGA-W3-AA1R-06 9 120475135 120475135 G A TLR4 Missense_Mutation p.M243I 0.61 deleterious(0) possibly_damaging(0.676) TCGA-W3-AA1R-06 9 120476704 120476704 C T TLR4 Silent p.I766I 0.76 TCGA-W3-AA1R-06 9 121929509 121929509 C T BRINP1 Silent p.G713G 0.78 TCGA-W3-AA1R-06 9 125281834 125281834 G A OR1J4 Missense_Mutation p.G139R 0.56 tolerated_low_confidence(0.35) benign(0.003) TCGA-W3-AA1R-06 9 125680950 125680950 C T ZBTB26 Missense_Mutation p.D422N 0.76 deleterious_low_confidence(0.02) possibly_damaging(0.676) TCGA-W3-AA1R-06 9 130700157 130700157 C T DPM2 5'UTR 0.75 TCGA-W3-AA1R-06 9 133370306 133370306 C T ASS1 Silent p.S341S 0.59 TCGA-W3-AA1R-06 9 134019958 134019958 C T NUP214 Missense_Mutation p.S529F 0.70 possibly_damaging(0.683) TCGA-W3-AA1R-06 9 137622287 137622287 C T COL5A1 Missense_Mutation p.P377L 0.63 probably_damaging(0.999) TCGA-W3-AA1R-06 9 137707802 137707802 G A COL5A1 Missense_Mutation p.D1364N 0.38 unknown(0) TCGA-W3-AA1R-06 9 138378825 138378825 C T PPP1R26 Silent p.S823S 0.66 TCGA-W3-AA1R-06 9 138669243 138669243 C T KCNT1 Silent p.I803I 0.70 TCGA-W3-AA1R-06 9 138714333 138714333 G A CAMSAP1 Missense_Mutation p.S725F 0.78 deleterious(0.01) benign(0.004) TCGA-W3-AA1R-06 9 139345826 139345826 G A SEC16A Missense_Mutation p.P2065L 0.68 tolerated(0.14) benign(0.041) TCGA-W3-AA1R-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.81 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 9 27173333 27173333 G A TEK Missense_Mutation p.G292S 0.63 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1R-06 9 27949813 27949813 C T LINGO2 Missense_Mutation p.S286N 0.63 tolerated(0.21) benign(0.035) TCGA-W3-AA1R-06 9 27949910 27949910 G A LINGO2 Missense_Mutation p.L254F 0.65 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 9 27950092 27950092 G A LINGO2 Missense_Mutation p.P193L 0.82 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1R-06 9 2812349 2812349 G A KIAA0020 Missense_Mutation p.S428L 0.89 deleterious(0) benign(0.146) TCGA-W3-AA1R-06 9 2837348 2837348 G A KIAA0020 Missense_Mutation p.P46S 0.73 tolerated(0.21) benign(0.003) TCGA-W3-AA1R-06 9 34649507 34649507 C T GALT Silent p.F335F 0.78 TCGA-W3-AA1R-06 9 35043515 35043515 G A C9orf131 Missense_Mutation p.G297R 0.66 tolerated(0.23) benign(0.032) TCGA-W3-AA1R-06 9 35107787 35107787 G A FAM214B Missense_Mutation p.S162F 0.76 tolerated_low_confidence(0.14) benign(0) TCGA-W3-AA1R-06 9 40773394 40773394 C A ZNF658 Missense_Mutation p.E627D 0.72 deleterious(0.02) probably_damaging(0.957) TCGA-W3-AA1R-06 9 6328494 6328494 G A TPD52L3 5'UTR 0.78 TCGA-W3-AA1R-06 9 77249576 77249576 T G RORB Missense_Mutation p.N41K 0.58 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1R-06 9 77339484 77339484 C T TRPM6 3'UTR 0.77 TCGA-W3-AA1R-06 9 79321109 79321109 C T PRUNE2 Silent p.L2027L 0.60 TCGA-W3-AA1R-06 9 80916890 80916890 G A PSAT1 Missense_Mutation p.D48N 0.53 tolerated(0.08) benign(0.022) TCGA-W3-AA1R-06 9 90220019 90220019 C T DAPK1 Silent p.I71I 0.58 TCGA-W3-AA1R-06 X 100077320 100077320 C T CSTF2 Missense_Mutation p.A73V 0.83 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1R-06 X 101576753 101576753 G A NXF2 Missense_Mutation p.D417N 0.39 tolerated(0.17) benign(0.044) TCGA-W3-AA1R-06 X 105153505 105153505 T C NRK Silent p.A625A 0.86 TCGA-W3-AA1R-06 X 105179175 105179175 C T NRK Silent p.F1172F 0.81 TCGA-W3-AA1R-06 X 110497534 110497534 G A CAPN6 Missense_Mutation p.S88F 0.85 deleterious(0) probably_damaging(0.951) TCGA-W3-AA1R-06 X 111698527 111698527 C T ZCCHC16 Missense_Mutation p.P191S 0.87 tolerated(0.91) benign(0.007) TCGA-W3-AA1R-06 X 11682643 11682643 G A ARHGAP6 Silent p.S102S 0.60 TCGA-W3-AA1R-06 X 117817181 117817181 G A DOCK11 Splice_Site p.X2034_splice 0.89 TCGA-W3-AA1R-06 X 118809601 118809601 C T SEPT6 Missense_Mutation p.G21R 0.75 deleterious(0) possibly_damaging(0.826) TCGA-W3-AA1R-06 X 124097480 124097480 G A TENM1 Silent p.N41N 0.77 TCGA-W3-AA1R-06 X 12924804 12924804 G A TLR8 5'UTR 0.87 TCGA-W3-AA1R-06 X 129804161 129804161 G A ENOX2 Missense_Mutation p.R187C 0.83 deleterious(0) probably_damaging(1) TCGA-W3-AA1R-06 X 130218305 130218305 G A ARHGAP36 Silent p.R224R 0.89 TCGA-W3-AA1R-06 X 130412632 130412632 G A IGSF1 Missense_Mutation p.P620L 0.92 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1R-06 X 130412633 130412633 G A IGSF1 Missense_Mutation p.P620S 0.92 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA1R-06 X 132162052 132162052 C T USP26 Missense_Mutation p.G66E 0.87 tolerated(1) benign(0.001) TCGA-W3-AA1R-06 X 134989994 134989994 G A SAGE1 Missense_Mutation p.D385N 0.86 tolerated(0.07) possibly_damaging(0.908) TCGA-W3-AA1R-06 X 135291567 135291567 G A FHL1 Missense_Mutation p.R285K 0.81 tolerated_low_confidence(0.37) benign(0.005) TCGA-W3-AA1R-06 X 140992759 140992759 C T MAGEC1 5'UTR 0.95 TCGA-W3-AA1R-06 X 140995122 140995122 C T MAGEC1 Silent p.F644F 0.83 TCGA-W3-AA1R-06 X 142717817 142717817 A T SLITRK4 Missense_Mutation p.S370T 0.81 tolerated(0.1) benign(0.004) TCGA-W3-AA1R-06 X 142795163 142795163 C T SPANXN2 Missense_Mutation p.G172E 0.77 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1R-06 X 142803888 142803888 G A SPANXN2 5'UTR 0.89 TCGA-W3-AA1R-06 X 148037223 148037223 G A AFF2 Missense_Mutation p.E550K 0.74 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1R-06 X 148044282 148044282 G A AFF2 Missense_Mutation p.E910K 0.86 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1R-06 X 151935152 151935152 G A MAGEA3 3'UTR 0.71 TCGA-W3-AA1R-06 X 152160097 152160097 C T PNMA5 Missense_Mutation p.D16N 0.89 tolerated(0.18) benign(0.421) TCGA-W3-AA1R-06 X 153175962 153175962 G A ARHGAP4 Silent p.N680N 0.64 TCGA-W3-AA1R-06 X 19373831 19373831 C A PDHA1 Silent p.R301R 0.76 TCGA-W3-AA1R-06 X 23801995 23801995 C T SAT1 Missense_Mutation p.P66L 0.92 tolerated(0.15) benign(0.001) TCGA-W3-AA1R-06 X 27839536 27839536 C T MAGEB10 Missense_Mutation p.S38F 0.86 tolerated(0.61) benign(0.015) TCGA-W3-AA1R-06 X 27999449 27999449 C - DCAF8L1 Frame_Shift_Del p.M1? 0.43 TCGA-W3-AA1R-06 X 3238559 3238559 G A MXRA5 Missense_Mutation p.P1723S 0.96 deleterious(0.02) benign(0.295) TCGA-W3-AA1R-06 X 35821094 35821094 G A MAGEB16 Missense_Mutation p.E261K 0.75 tolerated(0.1) benign(0.066) TCGA-W3-AA1R-06 X 38226673 38226673 G A OTC Silent p.Q69Q 0.67 TCGA-W3-AA1R-06 X 43817930 43817930 G A NDP 5'UTR 0.75 TCGA-W3-AA1R-06 X 47918207 47918207 G A ZNF630 Missense_Mutation p.P542S 0.71 deleterious(0.03) benign(0.205) TCGA-W3-AA1R-06 X 48887845 48887845 G A TFE3 Missense_Mutation p.H518Y 0.89 deleterious(0.04) benign(0.415) TCGA-W3-AA1R-06 X 49021357 49021357 G A MAGIX Missense_Mutation p.A146T 0.86 tolerated(0.29) benign(0.029) TCGA-W3-AA1R-06 X 50121142 50121146 GATAA AATAAG DGKK RNA 0.43 TCGA-W3-AA1R-06 X 52677349 52677349 C T SSX7 Missense_Mutation p.G143E 0.79 tolerated(0.14) possibly_damaging(0.842) TCGA-W3-AA1R-06 X 52844175 52844175 G A XAGE5 Missense_Mutation p.G80R 0.83 tolerated(0.06) benign(0.03) TCGA-W3-AA1R-06 X 52844176 52844176 G A XAGE5 Missense_Mutation p.G80E 0.82 tolerated(0.1) benign(0.123) TCGA-W3-AA1R-06 X 6451926 6451926 C T VCX3A Missense_Mutation p.E141K 0.10 tolerated(0.26) unknown(0) TCGA-W3-AA1R-06 X 69647174 69647174 T C GDPD2 Missense_Mutation p.V266A 0.67 deleterious(0.02) possibly_damaging(0.626) TCGA-W3-AA1R-06 X 70443689 70443689 G A GJB1 Nonsense_Mutation p.W44* 0.91 TCGA-W3-AA1R-06 X 70757878 70757878 G C OGT Missense_Mutation p.E140Q 0.86 tolerated(0.31) benign(0.159) TCGA-W3-AA1R-06 X 71870239 71870239 C T PHKA1 Splice_Site p.X442_splice 0.67 TCGA-W3-AA1R-06 X 73043460 73043460 C T XIST RNA 0.72 TCGA-W3-AA1R-06 X 73067045 73067045 C T XIST RNA 0.79 TCGA-W3-AA1R-06 X 73962063 73962063 G A KIAA2022 Missense_Mutation p.H777Y 0.84 tolerated(0.12) benign(0.221) TCGA-W3-AA1R-06 X 84258911 84258911 T C APOOL 5'UTR 0.71 TCGA-W3-AA1R-06 X 84559417 84559417 G A POF1B Nonsense_Mutation p.Q500* 0.79 TCGA-W3-AA1R-06 X 96185735 96185735 G A DIAPH2 Missense_Mutation p.A328T 0.78 deleterious(0) unknown(0) TCGA-W3-AA1R-06 X 9665469 9665469 G A TBL1X Missense_Mutation p.A372T 0.78 deleterious(0) possibly_damaging(0.803) TCGA-W3-AA1R-06 X 9864448 9864448 C T SHROOM2 Missense_Mutation p.R834C 0.74 tolerated(0.07) benign(0.061) TCGA-W3-AA1R-06 X 99551284 99551284 G A PCDH19 Silent p.I1146I 0.84 TCGA-W3-AA1R-06 X 99662404 99662404 C T PCDH19 Missense_Mutation p.E398K 0.81 deleterious(0.03) probably_damaging(0.98) TCGA-W3-AA1R-06 X 99854060 99854060 C T TNMD Missense_Mutation p.P209S 0.69 tolerated(0.77) benign(0) TCGA-W3-AA1V-06 10 100189353 100189353 G A HPS1 Missense_Mutation p.P305L 0.24 deleterious(0.02) benign(0.106) TCGA-W3-AA1V-06 10 100401663 100401663 C T HPSE2 Missense_Mutation p.D347N 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 10 101147693 101147693 G A CNNM1 Silent p.R819R 0.35 TCGA-W3-AA1V-06 10 101147937 101147937 C T CNNM1 Silent p.P851P 0.52 TCGA-W3-AA1V-06 10 101165957 101165957 G A GOT1 Silent p.S158S 0.23 TCGA-W3-AA1V-06 10 101455713 101455713 G A ENTPD7 Missense_Mutation p.E282K 0.64 deleterious(0) possibly_damaging(0.906) TCGA-W3-AA1V-06 10 101654717 101654717 G A DNMBP Missense_Mutation p.L1048F 0.28 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 10 101841262 101841262 C T CPN1 Missense_Mutation p.E41K 0.52 tolerated(0.27) benign(0.309) TCGA-W3-AA1V-06 10 102006628 102006628 G T CWF19L1 Missense_Mutation p.P258H 0.21 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 10 102051066 102051066 C T PKD2L1 Missense_Mutation p.E667K 0.21 tolerated(0.73) benign(0.005) TCGA-W3-AA1V-06 10 102112181 102112181 G A SCD Nonsense_Mutation p.W123* 0.31 TCGA-W3-AA1V-06 10 102247837 102247837 C T SEC31B Missense_Mutation p.E1103K 0.24 tolerated(0.05) benign(0.211) TCGA-W3-AA1V-06 10 102509507 102509507 G A PAX2 Silent p.G16G 0.14 TCGA-W3-AA1V-06 10 103773772 103773772 G A C10orf76 Missense_Mutation p.P227S 0.23 tolerated(0.05) probably_damaging(0.949) TCGA-W3-AA1V-06 10 103901679 103901679 C T PPRC1 Silent p.A1138A 0.28 TCGA-W3-AA1V-06 10 103988621 103988621 T A ELOVL3 Missense_Mutation p.I142N 0.25 deleterious(0) possibly_damaging(0.732) TCGA-W3-AA1V-06 10 103988622 103988622 C A ELOVL3 Silent p.I142I 0.25 TCGA-W3-AA1V-06 10 104183562 104183562 G - CUEDC2 Frame_Shift_Del p.L217Cfs*5 0.20 TCGA-W3-AA1V-06 10 104590635 104590635 C T CYP17A1 Missense_Mutation p.E451K 0.27 deleterious(0) probably_damaging(0.942) TCGA-W3-AA1V-06 10 104831528 104831528 C T CNNM2 Intron 0.43 TCGA-W3-AA1V-06 10 105194637 105194637 C T PDCD11 Silent p.F1250F 0.33 TCGA-W3-AA1V-06 10 105194638 105194638 C T PDCD11 Missense_Mutation p.P1251S 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 10 105197782 105197782 C T PDCD11 Silent p.L1286L 0.19 TCGA-W3-AA1V-06 10 105218271 105218271 C T CALHM1 Missense_Mutation p.E80K 0.33 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 10 105796389 105796389 C T COL17A1 Silent p.R1093R 0.24 TCGA-W3-AA1V-06 10 105903228 105903228 G A WDR96 Missense_Mutation p.H1372Y 0.26 tolerated(0.05) benign(0.146) TCGA-W3-AA1V-06 10 105932279 105932279 C T WDR96 Missense_Mutation p.M825I 0.41 tolerated(0.1) benign(0.059) TCGA-W3-AA1V-06 10 105963355 105963355 C T WDR96 Intron 0.42 TCGA-W3-AA1V-06 10 105971822 105971822 G A WDR96 Silent p.P226P 0.21 TCGA-W3-AA1V-06 10 106014943 106014943 C T GSTO1 Silent p.V19V 0.20 TCGA-W3-AA1V-06 10 106014944 106014944 C T GSTO1 Missense_Mutation p.P20S 0.20 deleterious(0.02) benign(0.021) TCGA-W3-AA1V-06 10 106074847 106074847 G A ITPRIP Silent p.F321F 0.16 TCGA-W3-AA1V-06 10 106118308 106118308 G A CCDC147 Silent p.V73V 0.51 TCGA-W3-AA1V-06 10 106602608 106602608 C T SORCS3 Missense_Mutation p.S229L 0.57 deleterious(0) possibly_damaging(0.703) TCGA-W3-AA1V-06 10 106802828 106802828 G A SORCS3 Missense_Mutation p.D324N 0.29 deleterious(0.01) possibly_damaging(0.843) TCGA-W3-AA1V-06 10 106849594 106849594 G A SORCS3 Missense_Mutation p.G364R 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1V-06 10 106907545 106907545 A G SORCS3 Silent p.E491E 0.22 TCGA-W3-AA1V-06 10 108357143 108357143 G A SORCS1 Silent p.V1077V 0.36 TCGA-W3-AA1V-06 10 114136197 114136197 C T ACSL5 Missense_Mutation p.P44S 0.44 deleterious_low_confidence(0.02) benign(0.002) TCGA-W3-AA1V-06 10 114169267 114169267 G A ACSL5 Missense_Mutation p.D235N 0.24 tolerated(0.15) benign(0.059) TCGA-W3-AA1V-06 10 115337898 115337898 G A HABP2 Missense_Mutation p.E188K 0.18 deleterious(0) probably_damaging(0.926) TCGA-W3-AA1V-06 10 115489104 115489104 C T CASP7 Silent p.S272S 0.49 TCGA-W3-AA1V-06 10 115947891 115947891 G A TDRD1 Missense_Mutation p.G101R 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-W3-AA1V-06 10 115978205 115978205 G A TDRD1 Missense_Mutation p.E786K 0.51 tolerated(0.1) benign(0.005) TCGA-W3-AA1V-06 10 116032649 116032649 G A VWA2 Silent p.K174K 0.16 TCGA-W3-AA1V-06 10 116245099 116245099 G T ABLIM1 Intron 0.46 TCGA-W3-AA1V-06 10 116247728 116247728 C T ABLIM1 Missense_Mutation p.E344K 0.22 tolerated(0.3) benign(0.021) TCGA-W3-AA1V-06 10 116602984 116602984 C T FAM160B1 Missense_Mutation p.P272L 0.44 deleterious(0.02) probably_damaging(0.958) TCGA-W3-AA1V-06 10 116605816 116605816 C T FAM160B1 Silent p.F391F 0.23 TCGA-W3-AA1V-06 10 116931038 116931038 G A ATRNL1 Missense_Mutation p.E446K 0.18 deleterious(0.02) possibly_damaging(0.556) TCGA-W3-AA1V-06 10 118321018 118321018 G A PNLIP Missense_Mutation p.E402K 0.27 tolerated(0.31) possibly_damaging(0.591) TCGA-W3-AA1V-06 10 118354265 118354265 G A PNLIPRP1 Silent p.V118V 0.46 TCGA-W3-AA1V-06 10 118363622 118363622 G A PNLIPRP1 Missense_Mutation p.G382R 0.39 deleterious(0.03) possibly_damaging(0.678) TCGA-W3-AA1V-06 10 118451949 118451949 G A HSPA12A Silent p.F192F 0.44 TCGA-W3-AA1V-06 10 118969097 118969097 C T KCNK18 Missense_Mutation p.L148F 0.47 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 10 119303125 119303125 C T EMX2 Missense_Mutation p.P116L 0.19 deleterious(0.02) benign(0.004) TCGA-W3-AA1V-06 10 120803648 120803648 G C EIF3A Missense_Mutation p.R889G 0.25 tolerated(0.25) probably_damaging(0.977) TCGA-W3-AA1V-06 10 121335257 121335257 G A TIAL1 Missense_Mutation p.P367S 0.22 tolerated(0.19) benign(0.004) TCGA-W3-AA1V-06 10 121563788 121563788 C T INPP5F Missense_Mutation p.S407L 0.24 tolerated(0.06) benign(0.14) TCGA-W3-AA1V-06 10 121618633 121618633 G A MCMBP Missense_Mutation p.R69C 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 122273430 122273430 C T PPAPDC1A Missense_Mutation p.S58F 0.49 deleterious(0.01) benign(0.418) TCGA-W3-AA1V-06 10 12238138 12238138 G A CDC123 5'UTR 0.89 TCGA-W3-AA1V-06 10 122640377 122640377 A T WDR11 Missense_Mutation p.E568V 0.18 deleterious(0) benign(0.086) TCGA-W3-AA1V-06 10 122665463 122665463 C T WDR11 Nonsense_Mutation p.Q1123* 0.21 TCGA-W3-AA1V-06 10 123239368 123239368 C A FGFR2 3'Flank 0.30 TCGA-W3-AA1V-06 10 123845639 123845639 G A TACC2 Missense_Mutation p.M1208I 0.44 benign(0.008) TCGA-W3-AA1V-06 10 123847428 123847428 G A TACC2 Missense_Mutation p.D1805N 0.15 probably_damaging(0.952) TCGA-W3-AA1V-06 10 123987465 123987465 C T TACC2 Missense_Mutation p.S2613F 0.60 probably_damaging(0.971) TCGA-W3-AA1V-06 10 124034608 124034608 G A BTBD16 Silent p.S4S 0.33 TCGA-W3-AA1V-06 10 124214318 124214318 C T ARMS2 Silent p.S25S 0.33 TCGA-W3-AA1V-06 10 124214521 124214521 C T ARMS2 Missense_Mutation p.P93L 0.25 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-W3-AA1V-06 10 124248968 124248968 G A HTRA1 Silent p.V201V 0.53 TCGA-W3-AA1V-06 10 124358501 124358501 C T DMBT1 Silent p.V1056V 0.24 TCGA-W3-AA1V-06 10 124377543 124377543 C T DMBT1 Silent p.S1505S 0.20 TCGA-W3-AA1V-06 10 124377600 124377600 C T DMBT1 Silent p.V1524V 0.53 TCGA-W3-AA1V-06 10 124457263 124457263 G A C10orf120 Missense_Mutation p.P332S 0.27 tolerated(0.53) benign(0.006) TCGA-W3-AA1V-06 10 124457868 124457868 G A C10orf120 Missense_Mutation p.S130F 0.23 deleterious(0.04) possibly_damaging(0.584) TCGA-W3-AA1V-06 10 124648133 124648133 C T RP11-564D11.3 RNA 0.21 TCGA-W3-AA1V-06 10 125521641 125521641 G A CPXM2 Silent p.I508I 0.54 TCGA-W3-AA1V-06 10 126177132 126177132 C T LHPP Missense_Mutation p.S152L 0.21 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1V-06 10 126448989 126448989 G A METTL10 3'UTR 0.15 TCGA-W3-AA1V-06 10 126715465 126715465 G A CTBP2 Silent p.T288T 0.26 TCGA-W3-AA1V-06 10 12708787 12708787 C T CAMK1D Missense_Mutation p.H93Y 0.70 tolerated(0.06) benign(0.008) TCGA-W3-AA1V-06 10 127412404 127412404 C T EDRF1 Missense_Mutation p.P137S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 127782568 127782568 C T ADAM12 Missense_Mutation p.M380I 0.23 deleterious(0) probably_damaging(0.968) TCGA-W3-AA1V-06 10 12803001 12803001 G A CAMK1D Silent p.E118E 0.76 TCGA-W3-AA1V-06 10 128150064 128150064 G A C10orf90 Missense_Mutation p.P542L 0.13 deleterious(0.05) possibly_damaging(0.656) TCGA-W3-AA1V-06 10 129347832 129347832 A T NPS Nonsense_Mutation p.K30* 0.26 TCGA-W3-AA1V-06 10 129839150 129839150 A C PTPRE Missense_Mutation p.E2A 0.29 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 10 129866491 129866491 C T PTPRE Silent p.F316F 0.51 TCGA-W3-AA1V-06 10 129911844 129911844 C T MKI67 Silent p.L501L 0.22 TCGA-W3-AA1V-06 10 131565067 131565067 C T MGMT Missense_Mutation p.P175S 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 131639211 131639211 G A EBF3 Silent p.V477V 0.24 TCGA-W3-AA1V-06 10 133058643 133058643 G A TCERG1L Silent p.A245A 0.38 TCGA-W3-AA1V-06 10 133951622 133951622 G A JAKMIP3 Splice_Site p.X429_splice 0.65 TCGA-W3-AA1V-06 10 134151092 134151092 C T LRRC27 Silent p.A78A 0.25 TCGA-W3-AA1V-06 10 134230721 134230721 G A PWWP2B 3'UTR 0.21 TCGA-W3-AA1V-06 10 134896073 134896073 G A GPR123-AS1 3'Flank 0.22 TCGA-W3-AA1V-06 10 134912160 134912160 C T GPR123 Missense_Mutation p.R50C 0.35 deleterious(0) probably_damaging(0.913) TCGA-W3-AA1V-06 10 135025336 135025336 C T KNDC1 Missense_Mutation p.L1404F 0.44 tolerated(0.17) benign(0.013) TCGA-W3-AA1V-06 10 135106670 135106670 C T TUBGCP2 Silent p.L327L 0.27 TCGA-W3-AA1V-06 10 135345651 135345651 C T CYP2E1 Missense_Mutation p.L171F 0.57 tolerated(0.42) probably_damaging(0.913) TCGA-W3-AA1V-06 10 135351326 135351326 T A CYP2E1 Missense_Mutation p.F409L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 135352375 135352375 C T CYP2E1 Silent p.L463L 0.25 TCGA-W3-AA1V-06 10 135373619 135373619 C T SYCE1 Missense_Mutation p.E38K 0.24 tolerated(0.17) possibly_damaging(0.828) TCGA-W3-AA1V-06 10 135440237 135440237 C T FRG2B Missense_Mutation p.G4R 0.07 deleterious(0.02) possibly_damaging(0.808) TCGA-W3-AA1V-06 10 15255959 15255959 C T FAM171A1 Missense_Mutation p.R543Q 0.37 tolerated(0.46) probably_damaging(0.999) TCGA-W3-AA1V-06 10 15256395 15256395 G A FAM171A1 Missense_Mutation p.H398Y 0.69 deleterious(0) possibly_damaging(0.541) TCGA-W3-AA1V-06 10 16930460 16930460 G T CUBN Missense_Mutation p.P2954H 0.33 deleterious(0.04) benign(0.16) TCGA-W3-AA1V-06 10 17152941 17152941 G A CUBN Missense_Mutation p.S331F 0.82 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 10 17275604 17275604 C T VIM Silent p.L215L 0.40 TCGA-W3-AA1V-06 10 17636272 17636272 G A PTPLA Missense_Mutation p.P239L 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 18828383 18828383 G A CACNB2 Silent p.K571K 0.17 TCGA-W3-AA1V-06 10 18962940 18962940 T C ARL5B Missense_Mutation p.F123L 0.26 tolerated(0.12) benign(0.218) TCGA-W3-AA1V-06 10 20290786 20290786 G A PLXDC2 Nonsense_Mutation p.W65* 0.39 TCGA-W3-AA1V-06 10 20335849 20335849 T C PLXDC2 Missense_Mutation p.S126P 0.28 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 10 21186084 21186084 C T NEBL Silent p.K17K 0.67 TCGA-W3-AA1V-06 10 21414932 21414932 G A C10orf113 Silent p.F96F 0.80 TCGA-W3-AA1V-06 10 21461329 21461329 C T NEBL-AS1 5'Flank 0.73 TCGA-W3-AA1V-06 10 24832255 24832255 C T KIAA1217 Silent p.P1352P 0.30 TCGA-W3-AA1V-06 10 25464712 25464712 C T GPR158 Silent p.S121S 0.43 TCGA-W3-AA1V-06 10 25887347 25887347 C T GPR158 Missense_Mutation p.S931F 0.32 deleterious(0.02) benign(0.11) TCGA-W3-AA1V-06 10 25887938 25887938 A T GPR158 Missense_Mutation p.K1128I 0.38 tolerated(0.09) benign(0.067) TCGA-W3-AA1V-06 10 26822395 26822395 A T APBB1IP Nonsense_Mutation p.K281* 0.75 TCGA-W3-AA1V-06 10 26825097 26825097 T C APBB1IP Missense_Mutation p.F332S 0.62 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 10 27702412 27702412 C T PTCHD3 Silent p.A256A 0.72 TCGA-W3-AA1V-06 10 27703175 27703175 G A PTCHD3 Missense_Mutation p.P2L 0.74 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-W3-AA1V-06 10 28151389 28151389 G A ARMC4 Missense_Mutation p.P925S 0.26 tolerated(0.1) possibly_damaging(0.633) TCGA-W3-AA1V-06 10 28151408 28151408 G A ARMC4 Silent p.I918I 0.29 TCGA-W3-AA1V-06 10 28283975 28283975 C T ARMC4 Missense_Mutation p.E33K 0.66 deleterious(0.05) benign(0.049) TCGA-W3-AA1V-06 10 28527572 28527572 G A MPP7 5'UTR 0.70 TCGA-W3-AA1V-06 10 28527573 28527573 G A MPP7 5'UTR 0.70 TCGA-W3-AA1V-06 10 30653798 30653798 G A AL161651.1 3'Flank 0.67 TCGA-W3-AA1V-06 10 31810548 31810548 C T ZEB1 Missense_Mutation p.S763F 0.35 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 10 31816068 31816068 G A ZEB1 Missense_Mutation p.G1085E 0.62 tolerated_low_confidence(0.77) probably_damaging(0.931) TCGA-W3-AA1V-06 10 37421222 37421222 G A ANKRD30A Missense_Mutation p.E133K 0.47 deleterious(0.01) possibly_damaging(0.874) TCGA-W3-AA1V-06 10 37430789 37430789 G A ANKRD30A Missense_Mutation p.E266K 0.60 tolerated(0.41) possibly_damaging(0.636) TCGA-W3-AA1V-06 10 37430860 37430860 G A ANKRD30A Silent p.A289A 0.30 TCGA-W3-AA1V-06 10 37507988 37507988 G A ANKRD30A Silent p.L1060L 0.16 TCGA-W3-AA1V-06 10 37508409 37508409 C T ANKRD30A Nonsense_Mutation p.Q1201* 0.33 TCGA-W3-AA1V-06 10 38345517 38345517 C T ZNF33A 3'UTR 0.27 TCGA-W3-AA1V-06 10 394636 394636 G A DIP2C Missense_Mutation p.P1059L 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 10 43014717 43014717 G A ZNF37BP RNA 0.42 TCGA-W3-AA1V-06 10 43659366 43659366 C T CSGALNACT2 Missense_Mutation p.R345C 0.25 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 10 44052138 44052138 G A ZNF239 3'UTR 0.19 TCGA-W3-AA1V-06 10 44053375 44053375 T C ZNF239 Silent p.Q51Q 0.14 TCGA-W3-AA1V-06 10 44111899 44111899 G A ZNF485 Silent p.G136G 0.37 TCGA-W3-AA1V-06 10 44140109 44140109 C T ZNF32 Missense_Mutation p.G71R 0.30 tolerated(0.46) benign(0.379) TCGA-W3-AA1V-06 10 44871396 44871396 C T CXCL12 3'Flank 0.19 TCGA-W3-AA1V-06 10 44876327 44876327 C T CXCL12 Silent p.G21G 0.49 TCGA-W3-AA1V-06 10 45430134 45430134 A C TMEM72 Missense_Mutation p.Y127S 0.34 deleterious(0.03) possibly_damaging(0.804) TCGA-W3-AA1V-06 10 45430139 45430139 C A TMEM72 Missense_Mutation p.L129I 0.33 tolerated(0.23) benign(0.315) TCGA-W3-AA1V-06 10 45430268 45430268 C T TMEM72 Missense_Mutation p.H172Y 0.30 deleterious(0.01) possibly_damaging(0.742) TCGA-W3-AA1V-06 10 45488721 45488721 C G RASSF4 Missense_Mutation p.Q304E 0.33 tolerated(0.16) benign(0.004) TCGA-W3-AA1V-06 10 45644352 45644352 C T RP11-445N18.7 RNA 0.27 TCGA-W3-AA1V-06 10 45799254 45799254 G A OR13A1 Missense_Mutation p.S206F 0.18 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 10 45799292 45799292 G A OR13A1 Silent p.I193I 0.28 TCGA-W3-AA1V-06 10 45939274 45939274 C T ALOX5 Nonsense_Mutation p.Q558* 0.40 TCGA-W3-AA1V-06 10 46122423 46122423 A G ZFAND4 Missense_Mutation p.F283S 0.23 tolerated(0.47) benign(0.001) TCGA-W3-AA1V-06 10 46587382 46587382 C T PTPN20A Missense_Mutation p.E152K 0.17 tolerated(1) benign(0) TCGA-W3-AA1V-06 10 46965104 46965104 C T SYT15 Missense_Mutation p.D281N 0.19 tolerated(0.08) benign(0.285) TCGA-W3-AA1V-06 10 46967721 46967721 C T SYT15 Missense_Mutation p.G119E 0.10 deleterious(0.05) benign(0.111) TCGA-W3-AA1V-06 10 46969422 46969422 G A SYT15 Silent p.I13I 0.15 TCGA-W3-AA1V-06 10 46999659 46999659 A G GPRIN2 Missense_Mutation p.K260R 0.11 tolerated(0.12) benign(0.052) TCGA-W3-AA1V-06 10 48382238 48382238 C T RBP3 Silent p.K1137K 0.59 TCGA-W3-AA1V-06 10 48414412 48414412 G A GDF2 Silent p.L152L 0.23 TCGA-W3-AA1V-06 10 49393669 49393669 C T FRMPD2 Silent p.R762R 0.40 TCGA-W3-AA1V-06 10 49450337 49450337 G A FRMPD2 Missense_Mutation p.P145L 0.23 deleterious(0.01) benign(0.384) TCGA-W3-AA1V-06 10 49654630 49654630 C T ARHGAP22 Missense_Mutation p.R650Q 0.21 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 10 49687663 49687663 G A ARHGAP22 Missense_Mutation p.S156L 0.31 tolerated_low_confidence(0.13) benign(0.09) TCGA-W3-AA1V-06 10 49763533 49763533 C T ARHGAP22 Silent p.G99G 0.49 TCGA-W3-AA1V-06 10 49763556 49763556 G A ARHGAP22 Missense_Mutation p.P92S 0.50 tolerated(0.73) benign(0.015) TCGA-W3-AA1V-06 10 49790995 49790995 C T ARHGAP22 Intron 0.21 TCGA-W3-AA1V-06 10 50121550 50121550 G A LRRC18 Silent p.A217A 0.23 TCGA-W3-AA1V-06 10 50272755 50272755 G A VSTM4 Nonsense_Mutation p.Q221* 0.23 TCGA-W3-AA1V-06 10 50315769 50315769 G A VSTM4 Silent p.L109L 0.14 TCGA-W3-AA1V-06 10 50594748 50594748 C T DRGX Missense_Mutation p.E136K 0.15 tolerated(0.18) benign(0.013) TCGA-W3-AA1V-06 10 50690889 50690889 G A ERCC6 Silent p.I671I 0.26 TCGA-W3-AA1V-06 10 50902578 50902578 C T C10orf53 Intron 0.33 TCGA-W3-AA1V-06 10 50902624 50902624 G A C10orf53 Intron 0.54 TCGA-W3-AA1V-06 10 50916485 50916485 G C C10orf53 Missense_Mutation p.R99T 0.21 tolerated_low_confidence(0.33) benign(0) TCGA-W3-AA1V-06 10 50948765 50948765 C T OGDHL Missense_Mutation p.G711R 0.57 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 10 51464864 51464864 G A AGAP7 Missense_Mutation p.P531L 0.57 deleterious(0.02) probably_damaging(0.983) TCGA-W3-AA1V-06 10 51818964 51818964 C T RP11-324H6.5 RNA 0.23 TCGA-W3-AA1V-06 10 51826465 51826465 A G FAM21A 5'Flank 0.16 TCGA-W3-AA1V-06 10 51974592 51974592 C A ASAH2 Nonsense_Mutation p.G351* 0.27 TCGA-W3-AA1V-06 10 52071160 52071160 C T SGMS1 Missense_Mutation p.E253K 0.61 tolerated(0.29) benign(0.165) TCGA-W3-AA1V-06 10 52390589 52390589 T A RP11-50E11.3 RNA 0.17 TCGA-W3-AA1V-06 10 52603792 52603792 G A A1CF Missense_Mutation p.P72S 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 10 54050006 54050006 G A PRKG1 Missense_Mutation p.E640K 0.21 tolerated(0.1) benign(0.255) TCGA-W3-AA1V-06 10 5437407 5437407 G A TUBAL3 Silent p.L93L 0.29 TCGA-W3-AA1V-06 10 5541126 5541126 C T CALML5 Silent p.Q92Q 0.27 TCGA-W3-AA1V-06 10 55913005 55913005 C T PCDH15 Missense_Mutation p.E547K 0.53 tolerated(0.2) benign(0.1) TCGA-W3-AA1V-06 10 56106213 56106213 C T PCDH15 Missense_Mutation p.G169E 0.54 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 10 5967338 5967338 C T FBXO18 Silent p.L920L 0.82 TCGA-W3-AA1V-06 10 61829965 61829965 T G ANK3 Missense_Mutation p.K3558N 0.19 probably_damaging(0.981) TCGA-W3-AA1V-06 10 61830502 61830502 C T ANK3 Silent p.Q3379Q 0.20 TCGA-W3-AA1V-06 10 61833146 61833146 G A ANK3 Missense_Mutation p.S2498F 0.57 possibly_damaging(0.462) TCGA-W3-AA1V-06 10 61834336 61834336 G A ANK3 Silent p.S2101S 0.62 TCGA-W3-AA1V-06 10 61844589 61844589 C T ANK3 Splice_Site p.X1282_splice 0.68 TCGA-W3-AA1V-06 10 61956379 61956379 C T ANK3 Missense_Mutation p.G565E 0.28 probably_damaging(1) TCGA-W3-AA1V-06 10 6259151 6259151 C T PFKFB3 Silent p.I165I 0.74 TCGA-W3-AA1V-06 10 62648934 62648934 C G RHOBTB1 Missense_Mutation p.K164N 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 10 63170337 63170337 G A TMEM26 Nonsense_Mutation p.Q284* 0.11 TCGA-W3-AA1V-06 10 63520681 63520681 G A C10orf107 Missense_Mutation p.D158N 0.36 tolerated(0.21) possibly_damaging(0.57) TCGA-W3-AA1V-06 10 63851687 63851687 C T ARID5B Missense_Mutation p.S822F 0.28 deleterious(0) benign(0.229) TCGA-W3-AA1V-06 10 6483987 6483987 G A PRKCQ Silent p.L568L 0.38 TCGA-W3-AA1V-06 10 6525402 6525402 C T PRKCQ Silent p.K393K 0.32 TCGA-W3-AA1V-06 10 6540368 6540368 C T PRKCQ Missense_Mutation p.E178K 0.55 deleterious(0.01) probably_damaging(0.975) TCGA-W3-AA1V-06 10 67680077 67680077 G A CTNNA3 3'UTR 0.22 TCGA-W3-AA1V-06 10 68686912 68686912 C T LRRTM3 Nonsense_Mutation p.Q80* 0.44 TCGA-W3-AA1V-06 10 69832776 69832776 G A HERC4 Silent p.F30F 0.21 TCGA-W3-AA1V-06 10 69957120 69957120 G A MYPN Missense_Mutation p.R1057Q 0.30 deleterious(0) possibly_damaging(0.597) TCGA-W3-AA1V-06 10 69957190 69957190 G A MYPN Silent p.G1080G 0.20 TCGA-W3-AA1V-06 10 69970088 69970088 G A MYPN Missense_Mutation p.S1280N 0.18 deleterious(0.01) benign(0.097) TCGA-W3-AA1V-06 10 70917884 70917884 C A VPS26A Silent p.T156T 0.63 TCGA-W3-AA1V-06 10 71010051 71010051 G T HKDC1 Nonsense_Mutation p.G526* 0.56 TCGA-W3-AA1V-06 10 71010052 71010052 G A HKDC1 Missense_Mutation p.G526E 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 71020927 71020927 G A HKDC1 Missense_Mutation p.G750E 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 71175954 71175954 G A TACR2 Silent p.A42A 0.50 TCGA-W3-AA1V-06 10 71176152 71176152 C T TACR2 5'UTR 0.29 TCGA-W3-AA1V-06 10 71678829 71678829 G A COL13A1 Silent p.G347G 0.18 TCGA-W3-AA1V-06 10 71692325 71692325 G A COL13A1 Missense_Mutation p.G554R 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 71876441 71876441 T A AIFM2 Missense_Mutation p.T236S 0.32 tolerated(0.11) benign(0.014) TCGA-W3-AA1V-06 10 72020449 72020449 C T NPFFR1 Silent p.Q123Q 0.40 TCGA-W3-AA1V-06 10 72100450 72100450 C T LRRC20 Missense_Mutation p.E31K 0.50 tolerated(0.15) benign(0.305) TCGA-W3-AA1V-06 10 72181474 72181474 G T EIF4EBP2 Missense_Mutation p.D112Y 0.30 deleterious(0) probably_damaging(0.947) TCGA-W3-AA1V-06 10 72297621 72297621 T A PALD1 Missense_Mutation p.Y428N 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 72299377 72299377 C T PALD1 Silent p.P589P 0.49 TCGA-W3-AA1V-06 10 72299378 72299378 C T PALD1 Missense_Mutation p.P590S 0.49 tolerated(0.47) benign(0.008) TCGA-W3-AA1V-06 10 72360449 72360449 G T PRF1 Missense_Mutation p.D70E 0.29 deleterious(0.02) possibly_damaging(0.594) TCGA-W3-AA1V-06 10 72360451 72360451 C T PRF1 Missense_Mutation p.D70N 0.31 tolerated(0.24) benign(0.02) TCGA-W3-AA1V-06 10 72511950 72511950 G A ADAMTS14 Missense_Mutation p.R902Q 0.47 deleterious(0.01) possibly_damaging(0.833) TCGA-W3-AA1V-06 10 73039611 73039611 C T UNC5B Missense_Mutation p.S38F 0.31 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 10 7327743 7327743 G A SFMBT2 Intron 0.26 TCGA-W3-AA1V-06 10 73472960 73472960 C T C10orf105 3'UTR 0.37 TCGA-W3-AA1V-06 10 73521532 73521532 C T C10orf54 Missense_Mutation p.D112N 0.36 tolerated(0.24) benign(0.041) TCGA-W3-AA1V-06 10 73544687 73544687 G A CDH23 Missense_Mutation p.D1853N 0.47 tolerated(0.09) benign(0.202) TCGA-W3-AA1V-06 10 73545479 73545479 C T CDH23 Missense_Mutation p.P1940L 0.27 tolerated(0.1) benign(0.139) TCGA-W3-AA1V-06 10 73553005 73553005 G A CDH23 5'Flank 0.42 TCGA-W3-AA1V-06 10 73553022 73553022 C T CDH23 5'Flank 0.36 TCGA-W3-AA1V-06 10 73571099 73571099 G T CDH23 Missense_Mutation p.K795N 0.27 tolerated(0.11) possibly_damaging(0.649) TCGA-W3-AA1V-06 10 73575006 73575006 G A CDH23 Missense_Mutation p.E1106K 0.23 deleterious_low_confidence(0.01) benign(0.008) TCGA-W3-AA1V-06 10 74684248 74684248 G A OIT3 Missense_Mutation p.E405K 0.47 tolerated(0.5) benign(0.41) TCGA-W3-AA1V-06 10 74884769 74884769 G A NUDT13 Intron 0.33 TCGA-W3-AA1V-06 10 75037040 75037040 G A TTC18 Silent p.F896F 0.21 TCGA-W3-AA1V-06 10 75051764 75051764 G A TTC18 Silent p.V663V 0.58 TCGA-W3-AA1V-06 10 75107989 75107989 C T TTC18 Silent p.Q118Q 0.23 TCGA-W3-AA1V-06 10 75187504 75187504 G A MSS51 Missense_Mutation p.P82S 0.22 tolerated(0.22) benign(0.066) TCGA-W3-AA1V-06 10 75280682 75280682 G A USP54 Silent p.L822L 0.18 TCGA-W3-AA1V-06 10 75408031 75408031 G A SYNPO2L Missense_Mutation p.A460V 0.31 tolerated(0.07) benign(0.11) TCGA-W3-AA1V-06 10 75533198 75533198 C T FUT11 Missense_Mutation p.S320F 0.24 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 10 75549166 75549166 C T ZSWIM8 Missense_Mutation p.P167S 0.20 tolerated(0.7) benign(0.016) TCGA-W3-AA1V-06 10 75557209 75557209 C T ZSWIM8 Nonsense_Mutation p.R1170* 0.33 TCGA-W3-AA1V-06 10 75558115 75558115 G T ZSWIM8 Silent p.V1360V 0.24 TCGA-W3-AA1V-06 10 75832544 75832544 G A VCL Missense_Mutation p.E186K 0.23 tolerated(0.26) probably_damaging(0.994) TCGA-W3-AA1V-06 10 76790774 76790774 G A KAT6B Silent p.Q2064Q 0.56 TCGA-W3-AA1V-06 10 76854569 76854569 C T DUSP13 Missense_Mutation p.M204I 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 10 76868818 76868818 G A DUSP13 Missense_Mutation p.S33F 0.23 tolerated(0.18) benign(0.001) TCGA-W3-AA1V-06 10 76980550 76980550 C T VDAC2 Missense_Mutation p.L151F 0.26 deleterious(0.03) benign(0.108) TCGA-W3-AA1V-06 10 78317038 78317038 C T C10orf11 Nonsense_Mutation p.Q197* 0.13 TCGA-W3-AA1V-06 10 79576350 79576350 G A DLG5 Silent p.I1328I 0.38 TCGA-W3-AA1V-06 10 79782129 79782129 G A POLR3A Missense_Mutation p.P220L 0.28 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 10 81049610 81049610 C T ZMIZ1 Silent p.T168T 0.24 TCGA-W3-AA1V-06 10 81272938 81272938 C T EIF5AL1 3'UTR 0.21 TCGA-W3-AA1V-06 10 81318673 81318673 C T SFTPA2 Silent p.E87E 0.55 TCGA-W3-AA1V-06 10 82187231 82187231 C T FAM213A Silent p.F185F 0.51 TCGA-W3-AA1V-06 10 85961661 85961661 C T CDHR1 Silent p.I208I 0.33 TCGA-W3-AA1V-06 10 85982101 85982101 G A LRIT2 Missense_Mutation p.H410Y 0.23 tolerated(0.95) benign(0.019) TCGA-W3-AA1V-06 10 85992508 85992508 C T LRIT1 Silent p.P349P 0.50 TCGA-W3-AA1V-06 10 871713 871713 G A LARP4B Missense_Mutation p.P408L 0.73 deleterious(0.04) benign(0.178) TCGA-W3-AA1V-06 10 87484246 87484246 G T GRID1 Missense_Mutation p.P574H 0.24 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 10 88259760 88259760 G A WAPAL Nonsense_Mutation p.R414* 0.29 TCGA-W3-AA1V-06 10 88672074 88672074 G A BMPR1A Missense_Mutation p.G203E 0.62 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 10 88703710 88703710 C T MMRN2 Silent p.Q277Q 0.26 TCGA-W3-AA1V-06 10 89472847 89472847 G A PAPSS2 Missense_Mutation p.G54E 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 89473804 89473804 C T PAPSS2 Missense_Mutation p.R129C 0.19 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 89473907 89473907 T A PAPSS2 Missense_Mutation p.L163H 0.25 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 10 89473908 89473908 C A PAPSS2 Silent p.L163L 0.25 TCGA-W3-AA1V-06 10 90365440 90365440 G A LIPJ Silent p.L282L 0.20 TCGA-W3-AA1V-06 10 90583105 90583105 C T ANKRD22 Missense_Mutation p.E144K 0.33 tolerated(0.43) benign(0.021) TCGA-W3-AA1V-06 10 90611401 90611401 C T ANKRD22 5'UTR 0.56 TCGA-W3-AA1V-06 10 91143193 91143193 A T IFIT1B Missense_Mutation p.E41D 0.64 tolerated(0.82) benign(0.007) TCGA-W3-AA1V-06 10 91143650 91143650 G A IFIT1B Missense_Mutation p.A194T 0.27 tolerated(0.59) benign(0.009) TCGA-W3-AA1V-06 10 91176969 91176969 C T IFIT5 Missense_Mutation p.R5C 0.23 deleterious(0.05) benign(0.163) TCGA-W3-AA1V-06 10 91198523 91198523 G A SLC16A12 Missense_Mutation p.S289F 0.38 tolerated(0.22) probably_damaging(1) TCGA-W3-AA1V-06 10 93000322 93000322 C T PCGF5 Missense_Mutation p.P65L 0.54 deleterious(0) possibly_damaging(0.472) TCGA-W3-AA1V-06 10 93008281 93008281 G A PCGF5 Missense_Mutation p.E77K 0.21 deleterious(0.01) possibly_damaging(0.723) TCGA-W3-AA1V-06 10 93751949 93751949 C T BTAF1 Silent p.H976H 0.23 TCGA-W3-AA1V-06 10 93851593 93851593 G A CPEB3 Nonsense_Mutation p.R561* 0.45 TCGA-W3-AA1V-06 10 94250290 94250290 G A IDE Missense_Mutation p.T498I 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1V-06 10 94392421 94392421 C T KIF11 Missense_Mutation p.A558V 0.33 tolerated(0.16) benign(0.005) TCGA-W3-AA1V-06 10 94589 94589 G A TUBB8 Silent p.F81F 0.66 TCGA-W3-AA1V-06 10 95093607 95093607 G A MYOF Missense_Mutation p.R1543W 0.46 deleterious(0) possibly_damaging(0.886) TCGA-W3-AA1V-06 10 95093651 95093651 G A MYOF Missense_Mutation p.P1528L 0.26 deleterious(0.01) benign(0.018) TCGA-W3-AA1V-06 10 95351811 95351811 G A RBP4 3'UTR 0.25 TCGA-W3-AA1V-06 10 95353681 95353681 G A RBP4 Missense_Mutation p.S156F 0.32 deleterious(0) probably_damaging(0.963) TCGA-W3-AA1V-06 10 95372779 95372779 C T PDE6C Silent p.F99F 0.41 TCGA-W3-AA1V-06 10 95399935 95399935 G A PDE6C Missense_Mutation p.E531K 0.16 deleterious(0.02) probably_damaging(0.949) TCGA-W3-AA1V-06 10 96028778 96028778 C T PLCE1 Silent p.T1458T 0.19 TCGA-W3-AA1V-06 10 96058248 96058248 G A PLCE1 Silent p.L1760L 0.12 TCGA-W3-AA1V-06 10 96058350 96058350 C T PLCE1 Silent p.I1794I 0.29 TCGA-W3-AA1V-06 10 96313918 96313918 T C HELLS Silent p.I63I 0.30 TCGA-W3-AA1V-06 10 96454809 96454809 G A CYP2C18 Missense_Mutation p.R206K 0.22 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 10 96541613 96541613 C T CYP2C19 Silent p.F226F 0.51 TCGA-W3-AA1V-06 10 96541662 96541662 G A CYP2C19 Missense_Mutation p.D243N 0.50 deleterious(0) benign(0.003) TCGA-W3-AA1V-06 10 96580365 96580365 T A CYP2C19 Missense_Mutation p.L311H 0.47 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 10 96701949 96701949 G A CYP2C9 Missense_Mutation p.G111E 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 96702114 96702114 C A CYP2C9 Intron 0.23 TCGA-W3-AA1V-06 10 96702115 96702115 C T CYP2C9 Intron 0.24 TCGA-W3-AA1V-06 10 96824668 96824668 C T CYP2C8 Silent p.V177V 0.49 TCGA-W3-AA1V-06 10 96827035 96827035 C T CYP2C8 Silent p.G137G 0.50 TCGA-W3-AA1V-06 10 96827158 96827158 G A CYP2C8 Intron 0.22 TCGA-W3-AA1V-06 10 97023791 97023791 G A PDLIM1 Silent p.N121N 0.44 TCGA-W3-AA1V-06 10 97096782 97096782 G A SORBS1 Silent p.T1045T 0.24 TCGA-W3-AA1V-06 10 97096783 97096783 G A SORBS1 Missense_Mutation p.T1045I 0.23 deleterious_low_confidence(0.02) benign(0.006) TCGA-W3-AA1V-06 10 97141510 97141510 G A SORBS1 Missense_Mutation p.R529C 0.54 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 10 97919523 97919523 T C ZNF518A RNA 0.26 TCGA-W3-AA1V-06 10 97983740 97983740 G A BLNK Nonsense_Mutation p.R123* 0.25 TCGA-W3-AA1V-06 10 98031116 98031116 T C BLNK Missense_Mutation p.K14E 0.48 deleterious(0.01) benign(0.156) TCGA-W3-AA1V-06 10 98108077 98108077 G A OPALIN Missense_Mutation p.S73L 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.765) TCGA-W3-AA1V-06 10 98129966 98129966 G A TLL2 Silent p.I923I 0.29 TCGA-W3-AA1V-06 10 98154990 98154990 G A TLL2 Silent p.S560S 0.25 TCGA-W3-AA1V-06 10 98182381 98182381 C A TLL2 Missense_Mutation p.V248F 0.22 deleterious(0) benign(0.086) TCGA-W3-AA1V-06 10 98744626 98744626 C T C10orf12 Missense_Mutation p.P1160L 0.50 deleterious(0) possibly_damaging(0.736) TCGA-W3-AA1V-06 10 98762069 98762069 C T SLIT1 Silent p.Q1404Q 0.48 TCGA-W3-AA1V-06 10 98790547 98790547 C T SLIT1 Missense_Mutation p.G850D 0.83 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 10 99161108 99161108 C T RRP12 5'Flank 0.27 TCGA-W3-AA1V-06 10 99344586 99344586 G A PI4K2A Silent p.V42V 0.22 TCGA-W3-AA1V-06 10 99358564 99358564 C T HOGA1 Missense_Mutation p.P82S 0.23 tolerated(0.34) benign(0.177) TCGA-W3-AA1V-06 10 99511136 99511136 C T ZFYVE27 Missense_Mutation p.L270F 0.39 tolerated(0.22) possibly_damaging(0.765) TCGA-W3-AA1V-06 10 99683107 99683107 C T CRTAC1 Missense_Mutation p.E158K 0.21 tolerated(0.53) possibly_damaging(0.714) TCGA-W3-AA1V-06 10 99695982 99695982 G A CRTAC1 Silent p.I122I 0.67 TCGA-W3-AA1V-06 11 100169975 100169975 G A CNTN5 Missense_Mutation p.E823K 0.25 tolerated(0.61) probably_damaging(0.999) TCGA-W3-AA1V-06 11 10050032 10050032 C T SBF2 Missense_Mutation p.G196S 0.31 tolerated(0.31) benign(0.053) TCGA-W3-AA1V-06 11 10050033 10050033 C T SBF2 Silent p.T195T 0.30 TCGA-W3-AA1V-06 11 1006555 1006555 A C AP2A2 Missense_Mutation p.K745T 0.48 deleterious(0) possibly_damaging(0.827) TCGA-W3-AA1V-06 11 101762062 101762062 A T ANGPTL5 Missense_Mutation p.I372N 0.61 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 11 103153752 103153752 A T DYNC2H1 Missense_Mutation p.I3617L 0.70 benign(0.001) TCGA-W3-AA1V-06 11 10327968 10327968 G A ADM Missense_Mutation p.G113E 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 103780375 103780375 T C PDGFD 3'UTR 0.37 TCGA-W3-AA1V-06 11 103866894 103866894 G A PDGFD Missense_Mutation p.P137S 0.25 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 11 103870883 103870883 C T PDGFD Silent p.R75R 0.35 TCGA-W3-AA1V-06 11 104825557 104825557 G A CASP4 Missense_Mutation p.S60F 0.32 tolerated(0.18) benign(0.071) TCGA-W3-AA1V-06 11 104912146 104912146 C T CARD16 Missense_Mutation p.G192E 0.39 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-W3-AA1V-06 11 10503702 10503702 C T AMPD3 Silent p.F182F 0.12 TCGA-W3-AA1V-06 11 105623838 105623838 G A GRIA4 Missense_Mutation p.E127K 0.75 tolerated(0.72) benign(0.073) TCGA-W3-AA1V-06 11 10626061 10626061 C T MRVI1 Missense_Mutation p.R545K 0.17 tolerated(0.31) probably_damaging(0.999) TCGA-W3-AA1V-06 11 107578621 107578621 G A SLN Silent p.F12F 0.45 TCGA-W3-AA1V-06 11 10776652 10776652 C T CTR9 Missense_Mutation p.R98W 0.25 deleterious(0.03) probably_damaging(0.973) TCGA-W3-AA1V-06 11 1080916 1080916 C T MUC2 Missense_Mutation p.P434S 0.14 possibly_damaging(0.644) TCGA-W3-AA1V-06 11 108143500 108143500 C T ATM Missense_Mutation p.P1069S 0.61 tolerated(0.45) benign(0.005) TCGA-W3-AA1V-06 11 108350168 108350168 G A KDELC2 Missense_Mutation p.L385F 0.17 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 1094862 1094862 G A MUC2 Missense_Mutation p.G1984S 0.51 unknown(0) TCGA-W3-AA1V-06 11 1104323 1104323 G A MUC2 3'UTR 0.61 TCGA-W3-AA1V-06 11 110477456 110477456 C T ARHGAP20 Missense_Mutation p.G265R 0.30 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 11 113650893 113650893 G A CLDN25 Missense_Mutation p.E126K 0.74 tolerated(0.29) possibly_damaging(0.707) TCGA-W3-AA1V-06 11 113702686 113702686 G A USP28 Silent p.L263L 0.71 TCGA-W3-AA1V-06 11 11373731 11373731 C T CSNK2A3 Silent p.R312R 0.22 TCGA-W3-AA1V-06 11 113815350 113815350 C T HTR3B Silent p.I321I 0.43 TCGA-W3-AA1V-06 11 113934586 113934586 C T ZBTB16 Silent p.S188S 0.70 TCGA-W3-AA1V-06 11 114393071 114393071 C T NXPE1 Silent p.R279R 0.35 TCGA-W3-AA1V-06 11 114453464 114453464 G A NXPE4 Missense_Mutation p.H126Y 0.26 tolerated(0.3) benign(0.046) TCGA-W3-AA1V-06 11 114569086 114569086 G A NXPE2 Missense_Mutation p.R151K 0.30 tolerated(0.07) benign(0.443) TCGA-W3-AA1V-06 11 1151641 1151641 G A MUC5AC Silent p.R5R 0.46 TCGA-W3-AA1V-06 11 1159052 1159052 C T MUC5AC Silent p.S410S 0.39 TCGA-W3-AA1V-06 11 116703481 116703481 G A APOC3 Missense_Mutation p.G61S 0.43 tolerated(0.11) possibly_damaging(0.869) TCGA-W3-AA1V-06 11 117342619 117342619 G A DSCAML1 Missense_Mutation p.P1033L 0.35 deleterious(0) possibly_damaging(0.856) TCGA-W3-AA1V-06 11 117375749 117375749 C T DSCAML1 Missense_Mutation p.R751Q 0.63 tolerated(0.05) benign(0.062) TCGA-W3-AA1V-06 11 117859118 117859118 C T IL10RA Missense_Mutation p.P30L 0.25 tolerated(0.13) benign(0.075) TCGA-W3-AA1V-06 11 117866332 117866332 C T IL10RA Silent p.F239F 0.30 TCGA-W3-AA1V-06 11 118186202 118186202 C T CD3E Missense_Mutation p.P190L 0.35 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 11 118252190 118252190 T A UBE4A Missense_Mutation p.L661Q 0.41 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1V-06 11 118403800 118403800 C T TMEM25 Missense_Mutation p.A184V 0.33 deleterious(0) benign(0.231) TCGA-W3-AA1V-06 11 118501938 118501938 G A PHLDB1 Silent p.L614L 0.73 TCGA-W3-AA1V-06 11 118850336 118850336 C T FOXR1 Missense_Mutation p.S190F 0.37 deleterious(0) possibly_damaging(0.83) TCGA-W3-AA1V-06 11 119025009 119025009 G A ABCG4 Silent p.R132R 0.71 TCGA-W3-AA1V-06 11 119149242 119149242 C T CBL Missense_Mutation p.P417L 0.71 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 120673505 120673505 C A GRIK4 Silent p.A62A 0.38 TCGA-W3-AA1V-06 11 120929090 120929090 C T TBCEL Missense_Mutation p.S250L 0.78 tolerated(0.66) benign(0) TCGA-W3-AA1V-06 11 120989223 120989223 T A TECTA Missense_Mutation p.F333L 0.64 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 120989224 120989224 G A TECTA Missense_Mutation p.D334N 0.64 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 121348849 121348849 G A SORL1 Missense_Mutation p.G142E 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 121429505 121429505 C T SORL1 Silent p.L957L 0.61 TCGA-W3-AA1V-06 11 121477949 121477949 A G SORL1 Missense_Mutation p.N1706D 0.35 tolerated(0.2) possibly_damaging(0.577) TCGA-W3-AA1V-06 11 121986505 121986505 T A BLID Missense_Mutation p.K42N 0.32 tolerated_low_confidence(0.17) possibly_damaging(0.895) TCGA-W3-AA1V-06 11 122775006 122775006 C T C11orf63 Silent p.L240L 0.69 TCGA-W3-AA1V-06 11 122931850 122931850 C T HSPA8 Missense_Mutation p.M61I 0.77 deleterious_low_confidence(0.04) benign(0.09) TCGA-W3-AA1V-06 11 123466659 123466659 C T GRAMD1B Missense_Mutation p.R152C 0.67 deleterious(0.01) probably_damaging(0.976) TCGA-W3-AA1V-06 11 123754825 123754825 G A TMEM225 Silent p.I140I 0.74 TCGA-W3-AA1V-06 11 123756082 123756082 G A TMEM225 Silent p.S17S 0.32 TCGA-W3-AA1V-06 11 123810453 123810453 C T OR4D5 Missense_Mutation p.L44F 0.28 deleterious(0.03) benign(0.007) TCGA-W3-AA1V-06 11 123810790 123810790 C T OR4D5 Missense_Mutation p.S156F 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 11 123810973 123810973 C T OR4D5 Missense_Mutation p.S217L 0.68 deleterious(0) benign(0.398) TCGA-W3-AA1V-06 11 123814506 123814506 G T OR6T1 Missense_Mutation p.L14I 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-W3-AA1V-06 11 123894190 123894190 C T OR10G9 Silent p.V157V 0.70 TCGA-W3-AA1V-06 11 123894427 123894427 C T OR10G9 Silent p.A236A 0.34 TCGA-W3-AA1V-06 11 124120626 124120626 C T OR8G1 Silent p.F68F 0.72 TCGA-W3-AA1V-06 11 124310826 124310826 G A OR8B8 Silent p.N52N 0.76 TCGA-W3-AA1V-06 11 124564261 124564261 C T SPA17 Silent p.F125F 0.68 TCGA-W3-AA1V-06 11 1246915 1246915 C T MUC5B Silent p.T25T 0.33 TCGA-W3-AA1V-06 11 124761347 124761347 G A ROBO4 Missense_Mutation p.P599L 0.77 tolerated(0.5) probably_damaging(0.999) TCGA-W3-AA1V-06 11 124766420 124766420 C T ROBO4 Missense_Mutation p.G183R 0.69 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 11 12534871 12534871 C T PARVA Silent p.F294F 0.26 TCGA-W3-AA1V-06 11 1255496 1255496 C T MUC5B Silent p.A813A 0.27 TCGA-W3-AA1V-06 11 1263172 1263172 G A MUC5B Missense_Mutation p.V1688M 0.44 unknown(0) TCGA-W3-AA1V-06 11 1268922 1268922 C T MUC5B Silent p.A3604A 0.67 TCGA-W3-AA1V-06 11 1268967 1268967 C T MUC5B Silent p.A3619A 0.57 TCGA-W3-AA1V-06 11 1270759 1270759 G A MUC5B Missense_Mutation p.E4217K 0.24 probably_damaging(0.966) TCGA-W3-AA1V-06 11 128843209 128843209 G A ARHGAP32 Silent p.S1050S 0.34 TCGA-W3-AA1V-06 11 128844079 128844079 C T ARHGAP32 Missense_Mutation p.E991K 0.31 tolerated_low_confidence(0.36) benign(0.234) TCGA-W3-AA1V-06 11 128844315 128844315 G A ARHGAP32 Missense_Mutation p.S912L 0.76 deleterious(0) benign(0.424) TCGA-W3-AA1V-06 11 128856454 128856454 G A ARHGAP32 Missense_Mutation p.P456S 0.78 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 130286920 130286920 G A ADAMTS8 Silent p.I337I 0.32 TCGA-W3-AA1V-06 11 130748419 130748419 G A SNX19 Silent p.I959I 0.58 TCGA-W3-AA1V-06 11 130784858 130784858 G A SNX19 Missense_Mutation p.S326F 0.48 tolerated(0.26) benign(0.01) TCGA-W3-AA1V-06 11 130785278 130785279 GA - SNX19 Frame_Shift_Del p.S186Pfs*22 0.44 TCGA-W3-AA1V-06 11 132204970 132204970 G A NTM Missense_Mutation p.G333D 0.58 deleterious(0) possibly_damaging(0.457) TCGA-W3-AA1V-06 11 132306062 132306062 A G OPCML Silent p.N285N 0.64 TCGA-W3-AA1V-06 11 133791190 133791190 G A IGSF9B Silent p.S810S 0.71 TCGA-W3-AA1V-06 11 133814206 133814206 C A IGSF9B Missense_Mutation p.E106D 0.68 tolerated(0.18) benign(0.027) TCGA-W3-AA1V-06 11 134073090 134073090 G A NCAPD3 Missense_Mutation p.P491L 0.57 tolerated(0.18) benign(0.002) TCGA-W3-AA1V-06 11 134179626 134179626 C T GLB1L3 Silent p.F356F 0.44 TCGA-W3-AA1V-06 11 14501130 14501130 G A COPB1 Missense_Mutation p.A448V 0.43 tolerated(0.13) benign(0.009) TCGA-W3-AA1V-06 11 1464839 1464839 G A BRSK2 Missense_Mutation p.E298K 0.41 tolerated(0.07) benign(0.388) TCGA-W3-AA1V-06 11 14808161 14808161 C T PDE3B Missense_Mutation p.P403L 0.27 tolerated(0.06) possibly_damaging(0.728) TCGA-W3-AA1V-06 11 15134047 15134047 C T INSC Missense_Mutation p.A11V 0.28 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1V-06 11 15247321 15247321 C T INSC Silent p.L420L 0.37 TCGA-W3-AA1V-06 11 15994525 15994525 G A SOX6 Missense_Mutation p.L753F 0.24 tolerated(0.08) possibly_damaging(0.543) TCGA-W3-AA1V-06 11 1642974 1642974 G A KRTAP5-4 Missense_Mutation p.S117F 0.17 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 11 16816134 16816134 G A PLEKHA7 Silent p.F882F 0.26 TCGA-W3-AA1V-06 11 16816498 16816498 T G PLEKHA7 Missense_Mutation p.K826T 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 11 16822556 16822556 G A PLEKHA7 Silent p.L792L 0.28 TCGA-W3-AA1V-06 11 17409613 17409613 G A KCNJ11 Missense_Mutation p.P9L 0.37 deleterious(0.02) possibly_damaging(0.573) TCGA-W3-AA1V-06 11 17418499 17418499 C T ABCC8 Silent p.L1361L 0.33 TCGA-W3-AA1V-06 11 17428318 17428318 C T ABCC8 Silent p.Q1060Q 0.20 TCGA-W3-AA1V-06 11 17449895 17449895 C A ABCC8 Missense_Mutation p.G661C 0.22 deleterious(0.02) benign(0.442) TCGA-W3-AA1V-06 11 17544339 17544339 C T USH1C Missense_Mutation p.M337I 0.22 tolerated(0.31) benign(0.003) TCGA-W3-AA1V-06 11 17794150 17794150 G A KCNC1 Intron 0.22 TCGA-W3-AA1V-06 11 18022102 18022102 G A SERGEF Silent p.L150L 0.42 TCGA-W3-AA1V-06 11 18028181 18028181 G A SERGEF Silent p.I103I 0.22 TCGA-W3-AA1V-06 11 18048122 18048122 C T TPH1 Missense_Mutation p.D240N 0.25 deleterious(0) possibly_damaging(0.487) TCGA-W3-AA1V-06 11 18158944 18158944 C T MRGPRX3 Silent p.I65I 0.25 TCGA-W3-AA1V-06 11 18232032 18232032 T A RP11-113D6.10 3'UTR 0.26 TCGA-W3-AA1V-06 11 18313255 18313255 G A HPS5 Missense_Mutation p.S725F 0.45 deleterious(0.04) possibly_damaging(0.622) TCGA-W3-AA1V-06 11 18451395 18451395 C T LDHC Missense_Mutation p.S119L 0.52 tolerated(0.71) benign(0.015) TCGA-W3-AA1V-06 11 18956018 18956018 G A MRGPRX1 Missense_Mutation p.S105F 0.73 tolerated(0.13) benign(0.013) TCGA-W3-AA1V-06 11 1955863 1955863 C T TNNT3 Missense_Mutation p.H190Y 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 11 1959716 1959716 G A TNNT3 Nonsense_Mutation p.W257* 0.48 TCGA-W3-AA1V-06 11 20005699 20005699 T A NAV2 Missense_Mutation p.Y915N 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 11 20066633 20066633 C T NAV2 Missense_Mutation p.P1130S 0.24 tolerated(0.46) benign(0.002) TCGA-W3-AA1V-06 11 20127079 20127079 G T NAV2 Missense_Mutation p.W2275L 0.53 deleterious(0.03) probably_damaging(0.983) TCGA-W3-AA1V-06 11 20648376 20648376 C T SLC6A5 Silent p.L461L 0.19 TCGA-W3-AA1V-06 11 21250987 21250987 G A NELL1 Silent p.G512G 0.50 TCGA-W3-AA1V-06 11 2154069 2154069 G A IGF2 3'UTR 0.16 TCGA-W3-AA1V-06 11 22294416 22294416 C T ANO5 Nonsense_Mutation p.R706* 0.23 TCGA-W3-AA1V-06 11 22397619 22397619 C T SLC17A6 Silent p.F422F 0.17 TCGA-W3-AA1V-06 11 22399065 22399065 G A SLC17A6 Missense_Mutation p.E510K 0.25 tolerated(0.28) benign(0.025) TCGA-W3-AA1V-06 11 2432712 2432712 G A TRPM5 Silent p.L884L 0.32 TCGA-W3-AA1V-06 11 2441626 2441626 G A TRPM5 Missense_Mutation p.P159S 0.32 deleterious(0) probably_damaging(0.923) TCGA-W3-AA1V-06 11 24518773 24518773 C T LUZP2 5'UTR 0.38 TCGA-W3-AA1V-06 11 24936055 24936055 C T LUZP2 Missense_Mutation p.R165C 0.44 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 11 26584746 26584746 G A MUC15 Missense_Mutation p.T281I 0.47 deleterious(0.01) benign(0.296) TCGA-W3-AA1V-06 11 26587279 26587279 C T MUC15 Missense_Mutation p.E70K 0.23 tolerated_low_confidence(0.69) benign(0.024) TCGA-W3-AA1V-06 11 26663476 26663476 C T ANO3 Silent p.I725I 0.17 TCGA-W3-AA1V-06 11 27016538 27016538 G C FIBIN Missense_Mutation p.E155D 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-W3-AA1V-06 11 27078845 27078845 G A BBOX1 Missense_Mutation p.R106K 0.28 tolerated(0.26) benign(0) TCGA-W3-AA1V-06 11 27141292 27141292 C T BBOX1 Missense_Mutation p.P246S 0.50 deleterious(0.02) benign(0.127) TCGA-W3-AA1V-06 11 27147309 27147309 G A BBOX1 Silent p.K315K 0.26 TCGA-W3-AA1V-06 11 280862 280862 G A NLRP6 Silent p.K376K 0.25 TCGA-W3-AA1V-06 11 281166 281166 C T NLRP6 Silent p.L478L 0.26 TCGA-W3-AA1V-06 11 28119395 28119395 C T KIF18A Missense_Mutation p.V34I 0.21 deleterious(0.01) possibly_damaging(0.447) TCGA-W3-AA1V-06 11 28119422 28119422 C T KIF18A Missense_Mutation p.E25K 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 11 294664 294664 G A ATHL1 Missense_Mutation p.R710K 0.26 tolerated_low_confidence(0.51) benign(0.005) TCGA-W3-AA1V-06 11 2970469 2970469 G A NAP1L4 3'UTR 0.16 TCGA-W3-AA1V-06 11 30032753 30032753 G A KCNA4 Silent p.L491L 0.23 TCGA-W3-AA1V-06 11 3023255 3023255 G A CARS Missense_Mutation p.P769L 0.14 deleterious(0) possibly_damaging(0.461) TCGA-W3-AA1V-06 11 3023256 3023256 G T CARS Missense_Mutation p.P769T 0.14 deleterious(0.01) possibly_damaging(0.461) TCGA-W3-AA1V-06 11 3023257 3023257 A G CARS Silent p.I768I 0.14 TCGA-W3-AA1V-06 11 30435775 30435775 C T MPPED2 Missense_Mutation p.G256S 0.58 tolerated(0.09) possibly_damaging(0.784) TCGA-W3-AA1V-06 11 308165 308165 C T IFITM2 5'UTR 0.52 TCGA-W3-AA1V-06 11 30922039 30922039 G A DCDC1 Missense_Mutation p.P1503L 0.29 tolerated(0.44) benign(0) TCGA-W3-AA1V-06 11 3109549 3109549 G A OSBPL5 Silent p.S842S 0.27 TCGA-W3-AA1V-06 11 31327183 31327183 T C DCDC1 Missense_Mutation p.N245D 0.25 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 11 31482224 31482224 G A IMMP1L Missense_Mutation p.S48L 0.29 tolerated(0.49) benign(0.082) TCGA-W3-AA1V-06 11 32697131 32697131 C T CCDC73 Missense_Mutation p.E209K 0.19 deleterious(0.04) benign(0.212) TCGA-W3-AA1V-06 11 3380637 3380637 G A ZNF195 Missense_Mutation p.S534F 0.25 tolerated(0.24) probably_damaging(0.962) TCGA-W3-AA1V-06 11 3381049 3381049 G A ZNF195 Missense_Mutation p.P397S 0.39 deleterious(0) benign(0.152) TCGA-W3-AA1V-06 11 34107888 34107888 C T CAPRIN1 Missense_Mutation p.P387S 0.32 tolerated(0.41) probably_damaging(1) TCGA-W3-AA1V-06 11 34144084 34144084 G A NAT10 Missense_Mutation p.G287R 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 3423036 3423036 C T TSSC2 RNA 0.15 TCGA-W3-AA1V-06 11 34492975 34492975 C T CAT Silent p.L527L 0.48 TCGA-W3-AA1V-06 11 34515090 34515090 G A ELF5 Silent p.F107F 0.52 TCGA-W3-AA1V-06 11 36422761 36422761 C T PRR5L Silent p.P30P 0.39 TCGA-W3-AA1V-06 11 36483945 36483945 C T PRR5L Missense_Mutation p.P256S 0.26 tolerated(0.11) benign(0.021) TCGA-W3-AA1V-06 11 36596150 36596150 C T RAG1 Silent p.S432S 0.40 TCGA-W3-AA1V-06 11 3661472 3661472 G A ART5 Silent p.L63L 0.48 TCGA-W3-AA1V-06 11 3721918 3721918 G A NUP98 Missense_Mutation p.P1222S 0.20 deleterious(0.04) possibly_damaging(0.641) TCGA-W3-AA1V-06 11 372691 372691 T A B4GALNT4 Missense_Mutation p.F95L 0.64 tolerated(0.11) benign(0.039) TCGA-W3-AA1V-06 11 404269 404269 C T PKP3 Silent p.S768S 0.40 TCGA-W3-AA1V-06 11 418940 418940 C T ANO9 Missense_Mutation p.D662N 0.24 tolerated(0.06) probably_damaging(0.914) TCGA-W3-AA1V-06 11 418941 418941 C T ANO9 Silent p.K661K 0.23 TCGA-W3-AA1V-06 11 4389237 4389237 C T OR52B4 Missense_Mutation p.D97N 0.39 tolerated(0.3) benign(0.011) TCGA-W3-AA1V-06 11 44098943 44098943 C T ACCS Intron 0.45 TCGA-W3-AA1V-06 11 4470799 4470799 C T OR52K2 Missense_Mutation p.S77F 0.25 deleterious(0.01) possibly_damaging(0.714) TCGA-W3-AA1V-06 11 44931350 44931350 C T TSPAN18 Missense_Mutation p.T53M 0.48 deleterious(0.03) benign(0.298) TCGA-W3-AA1V-06 11 44939537 44939537 C T TSPAN18 Silent p.I91I 0.19 TCGA-W3-AA1V-06 11 45246376 45246376 G A PRDM11 Missense_Mutation p.E451K 0.55 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-W3-AA1V-06 11 45265866 45265866 G A SYT13 Silent p.L340L 0.37 TCGA-W3-AA1V-06 11 4566768 4566768 C A OR52M1 Silent p.I116I 0.30 TCGA-W3-AA1V-06 11 4566790 4566790 C T OR52M1 Missense_Mutation p.R124C 0.31 deleterious(0.01) benign(0.066) TCGA-W3-AA1V-06 11 4566811 4566811 C A OR52M1 Missense_Mutation p.P131T 0.49 deleterious(0.01) possibly_damaging(0.721) TCGA-W3-AA1V-06 11 45671623 45671623 G A CHST1 Missense_Mutation p.S284F 0.20 deleterious(0) possibly_damaging(0.73) TCGA-W3-AA1V-06 11 45928453 45928453 C T C11orf94 Missense_Mutation p.E48K 0.44 deleterious(0.01) benign(0.131) TCGA-W3-AA1V-06 11 45931657 45931657 G A PEX16 Missense_Mutation p.L342F 0.11 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-W3-AA1V-06 11 4593483 4593483 G A C11orf40 Missense_Mutation p.S117F 0.19 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-W3-AA1V-06 11 4608395 4608395 G A OR52I2 Missense_Mutation p.G118E 0.23 tolerated(0.11) possibly_damaging(0.904) TCGA-W3-AA1V-06 11 4626686 4626686 G T TRIM68 Missense_Mutation p.P17T 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-W3-AA1V-06 11 46455163 46455163 G A AMBRA1 Missense_Mutation p.S856L 0.21 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 11 46569374 46569374 G A AMBRA1 Missense_Mutation p.P63S 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.699) TCGA-W3-AA1V-06 11 4661532 4661532 C T OR51D1 Missense_Mutation p.P171L 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 4673715 4673715 C T OR51E1 Intron 0.50 TCGA-W3-AA1V-06 11 46908057 46908057 C T LRP4 Missense_Mutation p.R748Q 0.24 tolerated(0.05) possibly_damaging(0.556) TCGA-W3-AA1V-06 11 4703847 4703847 G A OR51E2 Missense_Mutation p.S32F 0.58 tolerated(0.7) benign(0.203) TCGA-W3-AA1V-06 11 47074006 47074006 C T C11orf49 Missense_Mutation p.H73Y 0.23 tolerated(0.14) possibly_damaging(0.868) TCGA-W3-AA1V-06 11 47187050 47187050 G A ARFGAP2 Missense_Mutation p.R517C 0.44 deleterious(0.03) possibly_damaging(0.832) TCGA-W3-AA1V-06 11 47266963 47266963 G T ACP2 Intron 0.38 TCGA-W3-AA1V-06 11 47300563 47300563 C T MADD Missense_Mutation p.T408I 0.29 tolerated(0.06) benign(0.048) TCGA-W3-AA1V-06 11 47371339 47371339 C T MYBPC3 Missense_Mutation p.D214N 0.57 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 11 47469609 47469609 G A RAPSN Silent p.L96L 0.55 TCGA-W3-AA1V-06 11 4825760 4825760 C T OR52R1 5'Flank 0.31 TCGA-W3-AA1V-06 11 48267315 48267315 G A OR4X2 Nonsense_Mutation p.W220* 0.31 TCGA-W3-AA1V-06 11 48285684 48285684 C T OR4X1 Missense_Mutation p.S91F 0.11 deleterious(0.01) possibly_damaging(0.862) TCGA-W3-AA1V-06 11 48286288 48286288 G A OR4X1 Silent p.V292V 0.13 TCGA-W3-AA1V-06 11 48328285 48328285 G A OR4S1 Missense_Mutation p.E171K 0.21 tolerated(0.12) possibly_damaging(0.671) TCGA-W3-AA1V-06 11 48346821 48346821 C T OR4C3 Missense_Mutation p.S110L 0.07 tolerated(1) benign(0.047) TCGA-W3-AA1V-06 11 4842746 4842746 C T OR51F2 Missense_Mutation p.P44L 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-W3-AA1V-06 11 4842843 4842843 C T OR51F2 Silent p.F76F 0.25 TCGA-W3-AA1V-06 11 48510571 48510571 C T OR4A47 Missense_Mutation p.S76F 0.23 deleterious_low_confidence(0.01) benign(0.008) TCGA-W3-AA1V-06 11 4869670 4869670 G A OR51S1 Missense_Mutation p.L257F 0.28 deleterious(0.02) benign(0.2) TCGA-W3-AA1V-06 11 4870010 4870010 G A OR51S1 Silent p.L143L 0.47 TCGA-W3-AA1V-06 11 4928973 4928973 C T OR51A7 Missense_Mutation p.A125V 0.24 deleterious(0.01) possibly_damaging(0.818) TCGA-W3-AA1V-06 11 4929036 4929036 T C OR51A7 Missense_Mutation p.L146P 0.25 deleterious(0.01) benign(0.171) TCGA-W3-AA1V-06 11 4935980 4935980 C T OR51G2 Missense_Mutation p.R305Q 0.23 deleterious(0.05) possibly_damaging(0.82) TCGA-W3-AA1V-06 11 4936477 4936477 G A OR51G2 Silent p.S139S 0.24 TCGA-W3-AA1V-06 11 4936874 4936874 C T OR51G2 Missense_Mutation p.G7E 0.50 tolerated(0.82) unknown(0) TCGA-W3-AA1V-06 11 4944768 4944768 C T OR51G1 Missense_Mutation p.E268K 0.49 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 11 4968054 4968054 C T OR51A4 Missense_Mutation p.E93K 0.11 tolerated(0.1) benign(0.033) TCGA-W3-AA1V-06 11 49831345 49831345 G A RP11-707M1.1 RNA 0.36 TCGA-W3-AA1V-06 11 49831552 49831552 G A RP11-707M1.1 RNA 0.46 TCGA-W3-AA1V-06 11 50003134 50003134 T A OR4C12 Nonsense_Mutation p.K302* 0.22 TCGA-W3-AA1V-06 11 5011074 5011074 G A MMP26 Nonsense_Mutation p.W99* 0.30 TCGA-W3-AA1V-06 11 5068517 5068517 C T OR52J3 Silent p.I254I 0.50 TCGA-W3-AA1V-06 11 5079909 5079909 C T OR52E2 Missense_Mutation p.E317K 0.27 tolerated_low_confidence(0.63) benign(0.001) TCGA-W3-AA1V-06 11 5080328 5080328 G A OR52E2 Missense_Mutation p.P177L 0.42 deleterious(0.01) benign(0.399) TCGA-W3-AA1V-06 11 5080387 5080387 G A OR52E2 Silent p.F157F 0.88 TCGA-W3-AA1V-06 11 5080576 5080576 G A OR52E2 Silent p.I94I 0.41 TCGA-W3-AA1V-06 11 5080815 5080815 G A OR52E2 Silent p.L15L 0.22 TCGA-W3-AA1V-06 11 5142597 5142597 C T OR52A4 RNA 0.51 TCGA-W3-AA1V-06 11 5153609 5153609 C T OR52A5 Nonsense_Mutation p.W88* 0.35 TCGA-W3-AA1V-06 11 5153610 5153610 C T OR52A5 Nonsense_Mutation p.W88* 0.35 TCGA-W3-AA1V-06 11 5221164 5221164 G A OR51V1 Missense_Mutation p.A256V 0.55 tolerated(0.08) possibly_damaging(0.702) TCGA-W3-AA1V-06 11 5246783 5246783 G A HBB 3'UTR 0.36 TCGA-W3-AA1V-06 11 5246791 5246791 G A HBB 3'UTR 0.21 TCGA-W3-AA1V-06 11 5247808 5247808 C T HBB Missense_Mutation p.R105K 0.29 tolerated(0.5) benign(0.024) TCGA-W3-AA1V-06 11 5269579 5269579 G A HBG1 3'UTR 0.59 TCGA-W3-AA1V-06 11 5274423 5274423 G A HBG2 3'UTR 0.57 TCGA-W3-AA1V-06 11 5274594 5274594 G A HBG2 Silent p.F119F 0.19 TCGA-W3-AA1V-06 11 5275535 5275535 G T HBG2 Missense_Mutation p.P101H 0.15 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 11 5275566 5275566 C T HBG2 Missense_Mutation p.E91K 0.15 tolerated(0.21) possibly_damaging(0.822) TCGA-W3-AA1V-06 11 5275596 5275596 C T HBG2 Missense_Mutation p.D81N 0.19 tolerated(1) benign(0.006) TCGA-W3-AA1V-06 11 5345264 5345264 C T OR51B2 Silent p.R88R 0.50 TCGA-W3-AA1V-06 11 5345280 5345280 A G OR51B2 Missense_Mutation p.L83P 0.45 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 11 5373043 5373043 C T OR51B6 Silent p.I102I 0.50 TCGA-W3-AA1V-06 11 5411009 5411009 C T OR51M1 Silent p.L127L 0.26 TCGA-W3-AA1V-06 11 5443435 5443435 C T OR51Q1 Missense_Mutation p.S2F 0.21 tolerated(0.07) benign(0.003) TCGA-W3-AA1V-06 11 5443714 5443714 G A OR51Q1 Missense_Mutation p.S95N 0.21 tolerated(0.07) benign(0.423) TCGA-W3-AA1V-06 11 5462385 5462385 C T OR51I1 Missense_Mutation p.M120I 0.26 deleterious(0) benign(0.046) TCGA-W3-AA1V-06 11 5475543 5475543 C T OR51I2 Silent p.L275L 0.29 TCGA-W3-AA1V-06 11 55032518 55032518 C T TRIM48 Missense_Mutation p.P63S 0.36 tolerated(0.31) benign(0.022) TCGA-W3-AA1V-06 11 55065017 55065017 C T TRIM51HP RNA 0.33 TCGA-W3-AA1V-06 11 5510223 5510223 C T OR52D1 Missense_Mutation p.S96F 0.22 deleterious(0.02) possibly_damaging(0.83) TCGA-W3-AA1V-06 11 5510373 5510373 G A OR52D1 Missense_Mutation p.R146K 0.50 tolerated(1) benign(0.003) TCGA-W3-AA1V-06 11 5510458 5510458 C T OR52D1 Silent p.H174H 0.49 TCGA-W3-AA1V-06 11 55110792 55110792 G A OR4A16 Missense_Mutation p.G39E 0.37 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-W3-AA1V-06 11 55111342 55111342 C T OR4A16 Silent p.F222F 0.38 TCGA-W3-AA1V-06 11 55111428 55111428 C T OR4A16 Missense_Mutation p.P251L 0.33 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-W3-AA1V-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.39 deleterious_low_confidence(0) benign(0.072) TCGA-W3-AA1V-06 11 55135858 55135858 C T OR4A15 Nonsense_Mutation p.R167* 0.18 TCGA-W3-AA1V-06 11 5528970 5528970 G A UBQLN3 Missense_Mutation p.P607S 0.23 tolerated(0.37) benign(0.014) TCGA-W3-AA1V-06 11 5536124 5536124 G A UBQLNL 3'UTR 0.26 TCGA-W3-AA1V-06 11 5537083 5537083 C T UBQLNL Missense_Mutation p.E197K 0.50 tolerated(0.08) benign(0.019) TCGA-W3-AA1V-06 11 55371373 55371373 G A OR4C11 Silent p.I159I 0.70 TCGA-W3-AA1V-06 11 55541597 55541597 G A OR5D13 Missense_Mutation p.M228I 0.72 tolerated(0.53) benign(0.001) TCGA-W3-AA1V-06 11 55563808 55563808 C T OR5D14 Silent p.F259F 0.67 TCGA-W3-AA1V-06 11 55587153 55587153 G A OR5D18 Silent p.L16L 0.75 TCGA-W3-AA1V-06 11 55587929 55587929 C T OR5D18 Missense_Mutation p.A275V 0.29 deleterious(0.01) benign(0.052) TCGA-W3-AA1V-06 11 5566286 5566286 G A OR52H1 Silent p.I156I 0.43 TCGA-W3-AA1V-06 11 5566669 5566669 C T OR52H1 Missense_Mutation p.E29K 0.35 deleterious(0.01) benign(0.41) TCGA-W3-AA1V-06 11 55735606 55735606 C T OR10AG1 Missense_Mutation p.D112N 0.73 deleterious(0) possibly_damaging(0.775) TCGA-W3-AA1V-06 11 55762066 55762066 G A OR5F1 Silent p.F12F 0.40 TCGA-W3-AA1V-06 11 55798158 55798158 C T OR5AS1 Silent p.S88S 0.28 TCGA-W3-AA1V-06 11 55904493 55904493 C T OR8J3 Silent p.R234R 0.31 TCGA-W3-AA1V-06 11 55905081 55905081 G A OR8J3 Silent p.T38T 0.35 TCGA-W3-AA1V-06 11 56113937 56113937 C T OR8K1 Silent p.I141I 0.76 TCGA-W3-AA1V-06 11 56380424 56380424 G A OR5M1 Silent p.I185I 0.29 TCGA-W3-AA1V-06 11 56510968 56510968 A T OR9G4 Missense_Mutation p.I107N 0.71 deleterious(0) possibly_damaging(0.775) TCGA-W3-AA1V-06 11 5653807 5653807 G A TRIM34 Silent p.K82K 0.21 TCGA-W3-AA1V-06 11 5664746 5664746 C T TRIM34 Missense_Mutation p.S425F 0.25 tolerated(0.45) benign(0.06) TCGA-W3-AA1V-06 11 56757274 56757274 G A OR5AK2 Missense_Mutation p.E296K 0.48 deleterious(0) benign(0.027) TCGA-W3-AA1V-06 11 57085361 57085361 C T TNKS1BP1 Silent p.R243R 0.11 TCGA-W3-AA1V-06 11 5719686 5719686 G A TRIM22 Missense_Mutation p.D221N 0.17 tolerated(0.8) benign(0.012) TCGA-W3-AA1V-06 11 57244262 57244262 G A RTN4RL2 Missense_Mutation p.G381R 0.29 tolerated(0.29) benign(0.002) TCGA-W3-AA1V-06 11 57244263 57244263 G C RTN4RL2 Missense_Mutation p.G381A 0.29 tolerated(0.41) benign(0.001) TCGA-W3-AA1V-06 11 57268717 57268717 G A SLC43A1 Silent p.F80F 0.26 TCGA-W3-AA1V-06 11 57381808 57381808 C T SERPING1 Silent p.F419F 0.29 TCGA-W3-AA1V-06 11 57428573 57428573 C T CLP1 Missense_Mutation p.H315Y 0.51 deleterious(0.01) benign(0.34) TCGA-W3-AA1V-06 11 5757725 5757725 G A OR56B1 5'UTR 0.26 TCGA-W3-AA1V-06 11 5757812 5757812 C T OR56B1 Silent p.I22I 0.50 TCGA-W3-AA1V-06 11 5776059 5776059 C T OR52N4 Missense_Mutation p.S30F 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-W3-AA1V-06 11 5776441 5776441 C T OR52N4 Silent p.L157L 0.33 TCGA-W3-AA1V-06 11 5776753 5776753 C T OR52N4 Silent p.F261F 0.53 TCGA-W3-AA1V-06 11 57886098 57886098 G A OR9I1 Silent p.V273V 0.36 TCGA-W3-AA1V-06 11 57886549 57886549 T C OR9I1 Missense_Mutation p.Y123C 0.55 deleterious(0.03) benign(0.078) TCGA-W3-AA1V-06 11 57886836 57886836 G A OR9I1 Silent p.L27L 0.20 TCGA-W3-AA1V-06 11 57971419 57971419 G A OR1S2 Silent p.L79L 0.26 TCGA-W3-AA1V-06 11 57983160 57983160 G A OR1S1 Missense_Mutation p.R315K 0.26 tolerated(0.2) benign(0.011) TCGA-W3-AA1V-06 11 57983193 57983193 G A OR1S1 Silent p.%3D 0.54 TCGA-W3-AA1V-06 11 57995528 57995528 C T OR10Q1 Missense_Mutation p.D274N 0.48 deleterious(0.02) benign(0.35) TCGA-W3-AA1V-06 11 57996123 57996123 G A OR10Q1 Silent p.L75L 0.23 TCGA-W3-AA1V-06 11 58035348 58035348 C T OR10W1 5'UTR 0.22 TCGA-W3-AA1V-06 11 5809710 5809710 C T OR52N1 Missense_Mutation p.E113K 0.16 deleterious(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 11 58170653 58170653 G A OR5B3 Missense_Mutation p.P77L 0.24 deleterious_low_confidence(0) benign(0.417) TCGA-W3-AA1V-06 11 58602012 58602012 G A GLYATL2 Missense_Mutation p.H259Y 0.23 deleterious(0.02) probably_damaging(0.966) TCGA-W3-AA1V-06 11 58602238 58602238 C T GLYATL2 Silent p.G183G 0.51 TCGA-W3-AA1V-06 11 5862308 5862308 G A OR52E6 Missense_Mutation p.H274Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 11 58919789 58919789 C T FAM111A Silent p.F216F 0.57 TCGA-W3-AA1V-06 11 59132453 59132453 C T OR5AN1 Silent p.V174V 0.26 TCGA-W3-AA1V-06 11 59211441 59211441 C T OR5A1 Missense_Mutation p.S267F 0.26 deleterious(0) probably_damaging(0.933) TCGA-W3-AA1V-06 11 59224555 59224555 G A OR4D6 Missense_Mutation p.G41E 0.07 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 11 59245604 59245604 G A OR4D10 Silent p.R234R 0.54 TCGA-W3-AA1V-06 11 5968985 5968985 C T OR56A3 Missense_Mutation p.P137S 0.47 tolerated(0.4) benign(0.014) TCGA-W3-AA1V-06 11 59814632 59814632 G A OOSP2 3'UTR 0.35 TCGA-W3-AA1V-06 11 60184036 60184036 C T MS4A14 Missense_Mutation p.S565F 0.30 tolerated(0.1) possibly_damaging(0.669) TCGA-W3-AA1V-06 11 60215166 60215166 C T MS4A5 Silent p.F179F 0.22 TCGA-W3-AA1V-06 11 60229975 60229975 G A MS4A1 Missense_Mutation p.S43N 0.30 tolerated(0.37) benign(0.006) TCGA-W3-AA1V-06 11 60235780 60235780 G A MS4A1 Missense_Mutation p.E245K 0.46 tolerated(0.08) benign(0.269) TCGA-W3-AA1V-06 11 6024095 6024095 C T OR56A4 Missense_Mutation p.G95E 0.19 tolerated(0.27) possibly_damaging(0.859) TCGA-W3-AA1V-06 11 60264816 60264816 C T MS4A12 Missense_Mutation p.H9Y 0.21 tolerated(1) benign(0) TCGA-W3-AA1V-06 11 6048636 6048636 C T OR56A1 Missense_Mutation p.S100N 0.52 deleterious(0.03) probably_damaging(0.968) TCGA-W3-AA1V-06 11 60561517 60561517 G A MS4A10 Missense_Mutation p.D145N 0.50 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 60671260 60671260 C T PRPF19 Silent p.E31E 0.20 TCGA-W3-AA1V-06 11 60781021 60781021 T - CD6 Frame_Shift_Del p.G428Efs*7 0.19 TCGA-W3-AA1V-06 11 61036438 61036438 T A VWCE Missense_Mutation p.H613L 0.44 deleterious(0) possibly_damaging(0.575) TCGA-W3-AA1V-06 11 61081380 61081380 G A DDB1 Silent p.A605A 0.22 TCGA-W3-AA1V-06 11 61183241 61183241 A C CPSF7 Silent p.P370P 0.33 TCGA-W3-AA1V-06 11 61183857 61183857 G A CPSF7 Missense_Mutation p.P272S 0.28 tolerated(0.19) probably_damaging(0.986) TCGA-W3-AA1V-06 11 61291412 61291412 C T SYT7 Missense_Mutation p.G340E 0.20 tolerated(0.12) benign(0.07) TCGA-W3-AA1V-06 11 61291413 61291413 C T SYT7 Missense_Mutation p.G340R 0.20 deleterious(0.03) benign(0.22) TCGA-W3-AA1V-06 11 6129824 6129824 G A OR56B4 Silent p.K272K 0.57 TCGA-W3-AA1V-06 11 613852 613852 G A IRF7 Silent p.A273A 0.33 TCGA-W3-AA1V-06 11 61511749 61511749 C T DAGLA Missense_Mutation p.P973S 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-AA1V-06 11 61633140 61633140 G A FADS2 Silent p.L438L 0.13 TCGA-W3-AA1V-06 11 619562 619562 C T CDHR5 Missense_Mutation p.R402Q 0.16 tolerated(0.21) probably_damaging(0.947) TCGA-W3-AA1V-06 11 62298332 62298332 G A AHNAK Missense_Mutation p.P1186L 0.46 probably_damaging(1) TCGA-W3-AA1V-06 11 62298333 62298333 G A AHNAK Missense_Mutation p.P1186S 0.45 probably_damaging(0.999) TCGA-W3-AA1V-06 11 6232294 6232294 G A C11orf42 3'UTR 0.17 TCGA-W3-AA1V-06 11 62346045 62346045 G A TUT1 Missense_Mutation p.S421F 0.27 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 11 62416064 62416064 G A INTS5 Silent p.F496F 0.32 TCGA-W3-AA1V-06 11 62430730 62430730 C T C11orf48 Missense_Mutation p.E247K 0.20 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-W3-AA1V-06 11 6245651 6245651 A T FAM160A2 Missense_Mutation p.D32E 0.11 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 11 62487502 62487502 C T HNRNPUL2 Silent p.E591E 0.26 TCGA-W3-AA1V-06 11 62489400 62489400 C A HNRNPUL2 Silent p.V458V 0.27 TCGA-W3-AA1V-06 11 62607074 62607074 C T WDR74 5'UTR 0.52 TCGA-W3-AA1V-06 11 62655825 62655825 C T SLC3A2 Missense_Mutation p.S519F 0.49 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 62911165 62911165 G A SLC22A24 Silent p.I29I 0.36 TCGA-W3-AA1V-06 11 62933540 62933540 G A SLC22A25 Silent p.L421L 0.18 TCGA-W3-AA1V-06 11 63057917 63057917 C T SLC22A10 Missense_Mutation p.P94S 0.14 deleterious(0.02) benign(0.391) TCGA-W3-AA1V-06 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.32 TCGA-W3-AA1V-06 11 63078619 63078619 C T SLC22A10 3'UTR 0.44 TCGA-W3-AA1V-06 11 63176163 63176163 G A SLC22A9 Silent p.G471G 0.33 TCGA-W3-AA1V-06 11 63176310 63176310 G A SLC22A9 Silent p.R520R 0.18 TCGA-W3-AA1V-06 11 63176334 63176334 C T SLC22A9 Silent p.I528I 0.19 TCGA-W3-AA1V-06 11 63756173 63756173 C T OTUB1 Silent p.V56V 0.60 TCGA-W3-AA1V-06 11 63756174 63756174 C T OTUB1 Silent p.L57L 0.61 TCGA-W3-AA1V-06 11 63764088 63764088 G A OTUB1 Silent p.E102E 0.26 TCGA-W3-AA1V-06 11 63987722 63987722 C T FERMT3 Missense_Mutation p.S416F 0.24 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 11 63992155 63992155 G A TRPT1 Missense_Mutation p.P123L 0.19 tolerated(0.05) benign(0.035) TCGA-W3-AA1V-06 11 63992156 63992156 G A TRPT1 Missense_Mutation p.P123S 0.18 tolerated(0.11) benign(0.068) TCGA-W3-AA1V-06 11 64030275 64030275 C T PLCB3 Missense_Mutation p.P784S 0.41 tolerated(0.23) benign(0.08) TCGA-W3-AA1V-06 11 64070988 64070988 G A TEX40 Silent p.A129A 0.19 TCGA-W3-AA1V-06 11 64111895 64111895 G A CCDC88B Missense_Mutation p.E628K 0.29 tolerated_low_confidence(0.11) benign(0.086) TCGA-W3-AA1V-06 11 64121493 64121494 CA T CCDC88B Frame_Shift_Del p.A1317Vfs*4 0.30 TCGA-W3-AA1V-06 11 64138855 64138855 C T RPS6KA4 Missense_Mutation p.S741F 0.28 deleterious(0.01) benign(0.17) TCGA-W3-AA1V-06 11 64138856 64138856 C T RPS6KA4 Silent p.S741S 0.25 TCGA-W3-AA1V-06 11 64368240 64368240 C T SLC22A12 Silent p.A476A 0.57 TCGA-W3-AA1V-06 11 64419615 64419615 C T NRXN2 Missense_Mutation p.E810K 0.64 tolerated(0.23) benign(0.001) TCGA-W3-AA1V-06 11 64435110 64435110 C T NRXN2 Silent p.K470K 0.25 TCGA-W3-AA1V-06 11 64536776 64536776 G A SF1 Missense_Mutation p.P358L 0.32 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 11 64564292 64564292 G A MAP4K2 Missense_Mutation p.P494L 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 11 64603945 64603945 G A CDC42BPG Missense_Mutation p.P481L 0.19 tolerated(0.17) benign(0.006) TCGA-W3-AA1V-06 11 64677363 64677363 C T ATG2A Missense_Mutation p.V633I 0.18 tolerated(0.18) benign(0.071) TCGA-W3-AA1V-06 11 64695795 64695795 C T PPP2R5B Missense_Mutation p.P207L 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1V-06 11 6472626 6472626 G A TRIM3 Nonsense_Mutation p.R526* 0.24 TCGA-W3-AA1V-06 11 6472627 6472627 G A TRIM3 Silent p.V525V 0.25 TCGA-W3-AA1V-06 11 6477534 6477534 G A TRIM3 Silent p.F474F 0.34 TCGA-W3-AA1V-06 11 64802411 64802411 C T SNX15 Missense_Mutation p.P117S 0.50 tolerated(0.05) probably_damaging(1) TCGA-W3-AA1V-06 11 64855433 64855433 C T ZFPL1 Silent p.T260T 0.58 TCGA-W3-AA1V-06 11 64978764 64978764 G A CAPN1 3'UTR 0.59 TCGA-W3-AA1V-06 11 6502591 6502591 G A ARFIP2 5'Flank 0.36 TCGA-W3-AA1V-06 11 65063517 65063517 C T POLA2 Intron 0.24 TCGA-W3-AA1V-06 11 65063518 65063518 C T POLA2 Intron 0.25 TCGA-W3-AA1V-06 11 65113727 65113727 C T DPF2 Missense_Mutation p.S305F 0.18 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 11 6519442 6519442 C T DNHD1 5'UTR 0.30 TCGA-W3-AA1V-06 11 6519443 6519443 C T DNHD1 5'UTR 0.30 TCGA-W3-AA1V-06 11 65314046 65314046 A T LTBP3 Intron 0.21 TCGA-W3-AA1V-06 11 65320390 65320390 G A LTBP3 Missense_Mutation p.S376F 0.62 deleterious(0) probably_damaging(0.961) TCGA-W3-AA1V-06 11 6532552 6532552 C T DNHD1 Missense_Mutation p.R429W 0.42 benign(0.006) TCGA-W3-AA1V-06 11 65338939 65338939 C T SSSCA1 Nonsense_Mutation p.R112* 0.54 TCGA-W3-AA1V-06 11 65366992 65366992 G A MAP3K11 Silent p.S693S 0.33 TCGA-W3-AA1V-06 11 65402493 65402493 C T PCNXL3 Missense_Mutation p.R1619C 0.19 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 11 65561497 65561497 C T OVOL1 Intron 0.19 TCGA-W3-AA1V-06 11 65562137 65562137 G C OVOL1 Silent p.T149T 0.53 TCGA-W3-AA1V-06 11 65619948 65619948 C T SNX32 Missense_Mutation p.R280W 0.54 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 11 65734953 65734953 G A SART1 Missense_Mutation p.R442Q 0.15 tolerated(0.09) probably_damaging(0.988) TCGA-W3-AA1V-06 11 65765966 65765966 G T EIF1AD 3'UTR 0.48 TCGA-W3-AA1V-06 11 65824782 65824782 C T SF3B2 Missense_Mutation p.P238L 0.23 deleterious_low_confidence(0) possibly_damaging(0.725) TCGA-W3-AA1V-06 11 66061944 66061944 C T TMEM151A Missense_Mutation p.A76V 0.25 tolerated(0.47) benign(0.023) TCGA-W3-AA1V-06 11 66192660 66192660 G A NPAS4 Missense_Mutation p.G767S 0.41 tolerated(0.49) benign(0.004) TCGA-W3-AA1V-06 11 66334946 66334948 ATG TA CTSF Frame_Shift_Del p.S168Pfs*3 0.31 TCGA-W3-AA1V-06 11 66392801 66392801 C T RBM14 Missense_Mutation p.S485F 0.20 deleterious(0) unknown(0) TCGA-W3-AA1V-06 11 66444142 66444142 G T RBM4B Missense_Mutation p.Q137K 0.21 tolerated(0.51) benign(0.004) TCGA-W3-AA1V-06 11 66468373 66468373 C T SPTBN2 Missense_Mutation p.R1066Q 0.22 tolerated(0.3) benign(0.353) TCGA-W3-AA1V-06 11 66807516 66807516 C T SYT12 Nonsense_Mutation p.Q155* 0.29 TCGA-W3-AA1V-06 11 66812074 66812074 C T SYT12 Missense_Mutation p.A283V 0.69 tolerated(0.26) benign(0.007) TCGA-W3-AA1V-06 11 67018068 67018068 A G KDM2A Missense_Mutation p.E856G 0.24 tolerated(0.23) benign(0) TCGA-W3-AA1V-06 11 67067309 67067309 C T ANKRD13D Missense_Mutation p.P298S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 11 67077623 67077623 C T SSH3 Missense_Mutation p.P499L 0.36 tolerated(0.11) benign(0.006) TCGA-W3-AA1V-06 11 67203360 67203360 C T PTPRCAP Silent p.T155T 0.57 TCGA-W3-AA1V-06 11 67219878 67219878 G A GPR152 Silent p.F106F 0.36 TCGA-W3-AA1V-06 11 67222946 67222946 C T CABP4 Missense_Mutation p.R18C 0.38 tolerated_low_confidence(0.05) benign(0.004) TCGA-W3-AA1V-06 11 67257614 67257614 G A AIP Missense_Mutation p.E192K 0.13 tolerated(0.43) benign(0.003) TCGA-W3-AA1V-06 11 67262369 67262369 G A PITPNM1 Missense_Mutation p.P897L 0.26 deleterious(0.01) benign(0.126) TCGA-W3-AA1V-06 11 67286506 67286506 G A CABP2 3'UTR 0.31 TCGA-W3-AA1V-06 11 67287555 67287555 G A CABP2 Silent p.I152I 0.60 TCGA-W3-AA1V-06 11 67399866 67399866 G A TBX10 Missense_Mutation p.P264L 0.25 deleterious(0) benign(0.219) TCGA-W3-AA1V-06 11 67414399 67414399 G T ACY3 Missense_Mutation p.A39E 0.42 tolerated(0.2) benign(0.062) TCGA-W3-AA1V-06 11 67414400 67414400 C T ACY3 Missense_Mutation p.A39T 0.44 tolerated(0.2) benign(0.065) TCGA-W3-AA1V-06 11 6806382 6806382 C T OR2AG1 Silent p.A38A 0.48 TCGA-W3-AA1V-06 11 68131380 68131380 C T LRP5 Silent p.I284I 0.21 TCGA-W3-AA1V-06 11 68153814 68153814 G A LRP5 Missense_Mutation p.R349Q 0.34 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 11 68177550 68177550 G T LRP5 Missense_Mutation p.V754F 0.24 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 11 68193480 68193480 C T LRP5 Silent p.I1154I 0.56 TCGA-W3-AA1V-06 11 68571570 68571570 C T CPT1A Splice_Site p.X152_splice 0.15 TCGA-W3-AA1V-06 11 6867245 6867245 C T OR10A5 Missense_Mutation p.A111V 0.20 deleterious(0.03) benign(0.082) TCGA-W3-AA1V-06 11 6897968 6897968 C A OR10A4 Silent p.L30L 0.28 TCGA-W3-AA1V-06 11 6897969 6897969 C T OR10A4 Missense_Mutation p.L31F 0.28 tolerated(0.1) benign(0.008) TCGA-W3-AA1V-06 11 6913420 6913420 G A OR2D2 Silent p.F104F 0.29 TCGA-W3-AA1V-06 11 6913426 6913426 G A OR2D2 Silent p.L102L 0.30 TCGA-W3-AA1V-06 11 6977075 6977075 C T ZNF215 Silent p.F289F 0.22 TCGA-W3-AA1V-06 11 69924707 69924707 G A ANO1 5'UTR 0.24 TCGA-W3-AA1V-06 11 69970465 69970465 G A ANO1 Missense_Mutation p.E303K 0.26 tolerated(0.06) benign(0.125) TCGA-W3-AA1V-06 11 70332806 70332806 G A SHANK2 Missense_Mutation p.P1199S 0.58 tolerated(0.29) benign(0) TCGA-W3-AA1V-06 11 71184412 71184412 G A NADSYN1 Missense_Mutation p.S183N 0.32 tolerated(0.13) probably_damaging(0.994) TCGA-W3-AA1V-06 11 71238612 71238612 C T KRTAP5-7 Missense_Mutation p.S89F 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-W3-AA1V-06 11 71249303 71249303 G A KRTAP5-8 Missense_Mutation p.G68R 0.50 tolerated_low_confidence(0.6) unknown(0) TCGA-W3-AA1V-06 11 71276880 71276880 G A KRTAP5-10 Missense_Mutation p.G83S 0.48 unknown(0) TCGA-W3-AA1V-06 11 71277301 71277301 C T KRTAP5-10 3'UTR 0.27 TCGA-W3-AA1V-06 11 71804712 71804712 G A LRTOMT 5'UTR 0.29 TCGA-W3-AA1V-06 11 71847057 71847057 G A FOLR3 Missense_Mutation p.G20E 0.22 tolerated(0.34) probably_damaging(0.931) TCGA-W3-AA1V-06 11 72005678 72005678 G A CLPB Missense_Mutation p.R546C 0.24 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 11 72299834 72299834 C T PDE2A Missense_Mutation p.G355E 0.48 deleterious(0.04) benign(0.223) TCGA-W3-AA1V-06 11 72398521 72398521 T C ARAP1 Missense_Mutation p.E1383G 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA1V-06 11 72946330 72946330 C T P2RY2 Missense_Mutation p.R376W 0.24 tolerated_low_confidence(0.08) benign(0.002) TCGA-W3-AA1V-06 11 73021578 73021578 C T ARHGEF17 Missense_Mutation p.S632F 0.32 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-W3-AA1V-06 11 73063910 73063910 C T ARHGEF17 Silent p.S1102S 0.19 TCGA-W3-AA1V-06 11 73070899 73070899 C T ARHGEF17 Missense_Mutation p.R1370W 0.56 deleterious(0) probably_damaging(0.965) TCGA-W3-AA1V-06 11 7324521 7324521 T A SYT9 Missense_Mutation p.S133T 0.22 tolerated(0.12) probably_damaging(0.993) TCGA-W3-AA1V-06 11 73680341 73680341 C T DNAJB13 Silent p.L257L 0.21 TCGA-W3-AA1V-06 11 74013507 74013507 G A P4HA3 Silent p.V158V 0.31 TCGA-W3-AA1V-06 11 74168507 74168507 C T KCNE3 Silent p.G34G 0.18 TCGA-W3-AA1V-06 11 74880787 74880787 G A SLCO2B1 Silent p.V253V 0.24 TCGA-W3-AA1V-06 11 74904492 74904492 C T SLCO2B1 Silent p.L435L 0.45 TCGA-W3-AA1V-06 11 74915493 74915493 C T SLCO2B1 Silent p.F666F 0.17 TCGA-W3-AA1V-06 11 76253290 76253290 C T C11orf30 Missense_Mutation p.S863F 0.39 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-W3-AA1V-06 11 76255339 76255339 G A C11orf30 Missense_Mutation p.E916K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.905) TCGA-W3-AA1V-06 11 76255664 76255664 C T C11orf30 Missense_Mutation p.P1024L 0.17 tolerated_low_confidence(0.2) benign(0.122) TCGA-W3-AA1V-06 11 76371431 76371431 G A LRRC32 Silent p.P402P 0.60 TCGA-W3-AA1V-06 11 76371859 76371859 C T LRRC32 Missense_Mutation p.D260N 0.12 tolerated(0.29) benign(0.18) TCGA-W3-AA1V-06 11 76795986 76795986 G A CAPN5 Silent p.R18R 0.31 TCGA-W3-AA1V-06 11 76825371 76825371 T A CAPN5 Missense_Mutation p.I197N 0.33 deleterious(0) possibly_damaging(0.885) TCGA-W3-AA1V-06 11 76910790 76910790 G A MYO7A Silent p.L1593L 0.38 TCGA-W3-AA1V-06 11 7720302 7720302 G A OVCH2 Missense_Mutation p.S307F 0.25 tolerated(0.31) benign(0.015) TCGA-W3-AA1V-06 11 77635790 77635790 C T INTS4 Intron 0.40 TCGA-W3-AA1V-06 11 77727683 77727683 C T KCTD14 Missense_Mutation p.E242K 0.10 tolerated(1) benign(0) TCGA-W3-AA1V-06 11 7817774 7817774 G A OR5P2 Missense_Mutation p.S239F 0.22 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 11 78369194 78369194 A G TENM4 Missense_Mutation p.F2740S 0.31 deleterious(0.01) benign(0.024) TCGA-W3-AA1V-06 11 78383123 78383123 C T TENM4 Silent p.R1916R 0.46 TCGA-W3-AA1V-06 11 78383357 78383357 G A TENM4 Silent p.L1838L 0.10 TCGA-W3-AA1V-06 11 78399267 78399267 C T TENM4 Missense_Mutation p.D1698N 0.21 tolerated(0.13) probably_damaging(0.929) TCGA-W3-AA1V-06 11 78412589 78412589 C T TENM4 Missense_Mutation p.G1690E 0.24 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1V-06 11 78412798 78412798 G A TENM4 Silent p.L1620L 0.47 TCGA-W3-AA1V-06 11 78516398 78516398 G A TENM4 Silent p.F706F 0.65 TCGA-W3-AA1V-06 11 7949901 7949901 G A OR10A6 Silent p.F103F 0.53 TCGA-W3-AA1V-06 11 7981382 7981382 C A NLRP10 Nonsense_Mutation p.E593* 0.31 TCGA-W3-AA1V-06 11 7981440 7981440 C T NLRP10 Silent p.K573K 0.32 TCGA-W3-AA1V-06 11 7981721 7981721 C T NLRP10 Missense_Mutation p.V480M 0.58 tolerated(0.13) benign(0.09) TCGA-W3-AA1V-06 11 7981964 7981964 C T NLRP10 Missense_Mutation p.G399R 0.51 tolerated(0.08) benign(0.018) TCGA-W3-AA1V-06 11 7982421 7982421 G A NLRP10 Silent p.F246F 0.29 TCGA-W3-AA1V-06 11 800638 800638 T A PIDD Missense_Mutation p.E649V 0.62 deleterious(0.02) benign(0.005) TCGA-W3-AA1V-06 11 803286 803286 G A PIDD Silent p.L199L 0.51 TCGA-W3-AA1V-06 11 84996410 84996410 C T DLG2 Splice_Site p.X14_splice 0.24 TCGA-W3-AA1V-06 11 85431948 85431948 C T SYTL2 Missense_Mutation p.R827K 0.31 deleterious(0.03) probably_damaging(0.91) TCGA-W3-AA1V-06 11 85436952 85436952 G A SYTL2 Missense_Mutation p.P183L 0.36 deleterious(0) possibly_damaging(0.726) TCGA-W3-AA1V-06 11 85584267 85584267 G A CCDC83 Missense_Mutation p.E37K 0.30 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 11 88323792 88323792 G A GRM5 Missense_Mutation p.S556F 0.70 tolerated(0.69) benign(0.056) TCGA-W3-AA1V-06 11 88911577 88911577 C T TYR Silent p.P152P 0.40 TCGA-W3-AA1V-06 11 89088208 89088208 C T NOX4 Missense_Mutation p.R380Q 0.36 deleterious(0.05) possibly_damaging(0.603) TCGA-W3-AA1V-06 11 8948694 8948694 C T C11orf16 Missense_Mutation p.E118K 0.18 deleterious(0) probably_damaging(0.957) TCGA-W3-AA1V-06 11 89768757 89768757 C T TRIM49C Silent p.H126H 0.48 TCGA-W3-AA1V-06 11 89916171 89916171 C T NAALAD2 Silent p.F676F 0.37 TCGA-W3-AA1V-06 11 92085318 92085318 C T FAT3 Missense_Mutation p.P14S 0.37 benign(0.016) TCGA-W3-AA1V-06 11 92086200 92086200 C T FAT3 Missense_Mutation p.P308S 0.87 probably_damaging(0.964) TCGA-W3-AA1V-06 11 92087597 92087597 C T FAT3 Silent p.C773C 0.26 TCGA-W3-AA1V-06 11 92088352 92088352 C T FAT3 Missense_Mutation p.S1025F 0.69 probably_damaging(0.974) TCGA-W3-AA1V-06 11 92534203 92534203 C T FAT3 Missense_Mutation p.S2675L 0.38 probably_damaging(0.966) TCGA-W3-AA1V-06 11 92534629 92534629 C T FAT3 Missense_Mutation p.S2817L 0.83 benign(0.04) TCGA-W3-AA1V-06 11 92535040 92535040 C T FAT3 Missense_Mutation p.S2954F 0.69 probably_damaging(0.996) TCGA-W3-AA1V-06 11 92616421 92616421 C T FAT3 Missense_Mutation p.H4267Y 0.35 benign(0.209) TCGA-W3-AA1V-06 11 92623991 92623991 C T FAT3 Silent p.L4494L 0.39 TCGA-W3-AA1V-06 11 93122274 93122274 G A CCDC67 Missense_Mutation p.E342K 0.38 tolerated(0.39) possibly_damaging(0.485) TCGA-W3-AA1V-06 11 93170757 93170757 C T CCDC67 Missense_Mutation p.L563F 0.38 tolerated(0.1) benign(0.244) TCGA-W3-AA1V-06 11 9451316 9451316 C T IPO7 Nonsense_Mutation p.Q563* 0.52 TCGA-W3-AA1V-06 11 94533372 94533372 C T AMOTL1 Missense_Mutation p.P339L 0.66 tolerated(0.07) benign(0.305) TCGA-W3-AA1V-06 11 95516316 95516318 GAA - FAM76B In_Frame_Del p.S160del 0.72 TCGA-W3-AA1V-06 11 9608128 9608128 C T WEE1 Missense_Mutation p.P535S 0.54 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA1V-06 11 99715827 99715827 G A CNTN5 Missense_Mutation p.R137Q 0.63 tolerated(0.22) probably_damaging(0.93) TCGA-W3-AA1V-06 12 100431446 100431446 G A UHRF1BP1L Missense_Mutation p.L1455F 0.37 deleterious(0.02) probably_damaging(0.912) TCGA-W3-AA1V-06 12 100928760 100928760 C T NR1H4 Missense_Mutation p.R241C 0.65 tolerated(0.06) benign(0.205) TCGA-W3-AA1V-06 12 10149563 10149563 C T CLEC1B Missense_Mutation p.R107K 0.22 tolerated(0.34) benign(0.248) TCGA-W3-AA1V-06 12 101510519 101510519 G A ANO4 Missense_Mutation p.R803Q 0.73 tolerated(0.26) benign(0.082) TCGA-W3-AA1V-06 12 101551058 101551058 C T SLC5A8 Silent p.%3D 0.74 TCGA-W3-AA1V-06 12 101573869 101573869 C T SLC5A8 Missense_Mutation p.V391M 0.68 tolerated(0.08) benign(0.024) TCGA-W3-AA1V-06 12 102045062 102045062 A G MYBPC1 Missense_Mutation p.K448E 0.38 tolerated(1) benign(0.217) TCGA-W3-AA1V-06 12 102053530 102053530 A T MYBPC1 Missense_Mutation p.R591S 0.31 deleterious(0.02) possibly_damaging(0.472) TCGA-W3-AA1V-06 12 102056237 102056237 G A MYBPC1 Missense_Mutation p.G687S 0.63 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 102558309 102558309 C T PARPBP Missense_Mutation p.P197S 0.69 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 102590769 102590769 C T PMCH Missense_Mutation p.G144R 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 103240729 103240729 C T PAH Missense_Mutation p.E305K 0.82 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 12 10337942 10337942 G A TMEM52B Missense_Mutation p.D18N 0.26 tolerated(0.61) benign(0.054) TCGA-W3-AA1V-06 12 103696095 103696095 G A C12orf42 Missense_Mutation p.P292S 0.75 deleterious(0.02) probably_damaging(0.947) TCGA-W3-AA1V-06 12 103696096 103696096 G A C12orf42 Silent p.T291T 0.74 TCGA-W3-AA1V-06 12 104084314 104084314 G A STAB2 Missense_Mutation p.G1099R 0.37 deleterious(0.01) probably_damaging(0.963) TCGA-W3-AA1V-06 12 104123931 104123931 C T STAB2 Missense_Mutation p.S1707F 0.30 tolerated(0.72) benign(0.152) TCGA-W3-AA1V-06 12 105151005 105151005 G A CHST11 Silent p.L161L 0.48 TCGA-W3-AA1V-06 12 105199060 105199060 C T SLC41A2 Missense_Mutation p.G531E 0.68 tolerated(0.15) possibly_damaging(0.811) TCGA-W3-AA1V-06 12 105540892 105540892 C T KIAA1033 Nonsense_Mutation p.R828* 0.24 TCGA-W3-AA1V-06 12 106461575 106461575 T A NUAK1 Missense_Mutation p.I331F 0.37 tolerated(0.51) benign(0.004) TCGA-W3-AA1V-06 12 106480656 106480656 C T NUAK1 Silent p.E123E 0.19 TCGA-W3-AA1V-06 12 106480658 106480658 C T NUAK1 Missense_Mutation p.E123K 0.18 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 12 106500201 106500201 T C NUAK1 Missense_Mutation p.I115V 0.62 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 12 107078682 107078682 G A RFX4 Intron 0.50 TCGA-W3-AA1V-06 12 10780251 10780251 G A STYK1 Missense_Mutation p.L236F 0.28 tolerated(0.14) probably_damaging(1) TCGA-W3-AA1V-06 12 10782209 10782209 C T STYK1 Silent p.G172G 0.45 TCGA-W3-AA1V-06 12 108985653 108985653 G A TMEM119 Silent p.S169S 0.13 TCGA-W3-AA1V-06 12 109186272 109186272 G A SSH1 Silent p.S561S 0.26 TCGA-W3-AA1V-06 12 109186273 109186273 G A SSH1 Missense_Mutation p.S561F 0.26 deleterious_low_confidence(0.03) benign(0.396) TCGA-W3-AA1V-06 12 109292485 109292485 C T DAO Silent p.F242F 0.47 TCGA-W3-AA1V-06 12 109332631 109332631 G A SVOP Missense_Mutation p.P225L 0.72 tolerated(0.71) probably_damaging(0.999) TCGA-W3-AA1V-06 12 10959458 10959458 A G TAS2R8 Missense_Mutation p.I41T 0.31 tolerated(0.12) possibly_damaging(0.479) TCGA-W3-AA1V-06 12 10962528 10962528 G A TAS2R9 Silent p.I49I 0.26 TCGA-W3-AA1V-06 12 110028578 110028578 C T MVK Missense_Mutation p.S227L 1.00 tolerated(0.48) benign(0) TCGA-W3-AA1V-06 12 11082894 11082894 G A PRH2 Missense_Mutation p.V31I 0.47 tolerated_low_confidence(0.32) benign(0.198) TCGA-W3-AA1V-06 12 11183120 11183120 G A TAS2R31 Missense_Mutation p.P272L 0.51 tolerated(0.05) possibly_damaging(0.558) TCGA-W3-AA1V-06 12 112182698 112182698 C T ACAD10 Missense_Mutation p.P687S 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-W3-AA1V-06 12 112327865 112327865 T A MAPKAPK5 Missense_Mutation p.L415Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 12 112327866 112327866 G T MAPKAPK5 Silent p.L415L 0.33 TCGA-W3-AA1V-06 12 112622242 112622242 C T HECTD4 Missense_Mutation p.D3364N 0.67 benign(0.034) TCGA-W3-AA1V-06 12 113445629 113445629 C T OAS2 Silent p.F592F 0.42 TCGA-W3-AA1V-06 12 113446980 113446980 G A OAS2 Missense_Mutation p.E662K 0.36 tolerated(0.65) benign(0.081) TCGA-W3-AA1V-06 12 11546203 11546203 C T PRB2 Missense_Mutation p.G270E 0.36 deleterious(0.02) unknown(0) TCGA-W3-AA1V-06 12 11546204 11546204 C T PRB2 Missense_Mutation p.G270R 0.36 deleterious(0.03) unknown(0) TCGA-W3-AA1V-06 12 116434815 116434815 C T MED13L Silent p.K930K 0.18 TCGA-W3-AA1V-06 12 116457047 116457047 G A MED13L Missense_Mutation p.P331S 0.33 deleterious(0.01) unknown(0) TCGA-W3-AA1V-06 12 116534524 116534524 C T MED13L Silent p.G143G 0.15 TCGA-W3-AA1V-06 12 117513129 117513129 G A TESC Silent p.I25I 0.73 TCGA-W3-AA1V-06 12 117665333 117665333 G A NOS1 Silent p.S1207S 0.34 TCGA-W3-AA1V-06 12 117718557 117718557 C T NOS1 Silent p.G499G 0.23 TCGA-W3-AA1V-06 12 117749364 117749364 G A NOS1 Silent p.P253P 0.89 TCGA-W3-AA1V-06 12 117909119 117909119 G A KSR2 Silent p.I863I 0.29 TCGA-W3-AA1V-06 12 117914343 117914343 G A KSR2 Silent p.I836I 0.40 TCGA-W3-AA1V-06 12 117996327 117996327 C T KSR2 Silent p.L459L 0.61 TCGA-W3-AA1V-06 12 119978571 119978571 C T CCDC60 3'UTR 1.00 TCGA-W3-AA1V-06 12 120582467 120582467 C T GCN1L1 Silent p.G1776G 0.46 TCGA-W3-AA1V-06 12 120600973 120600973 G A GCN1L1 Silent p.L647L 0.24 TCGA-W3-AA1V-06 12 120789187 120789187 C T MSI1 Silent p.R250R 0.52 TCGA-W3-AA1V-06 12 120903516 120903516 C T SRSF9 Missense_Mutation p.R88K 0.46 tolerated(0.11) benign(0.12) TCGA-W3-AA1V-06 12 120903517 120903517 T C SRSF9 Missense_Mutation p.R88G 0.46 deleterious(0) possibly_damaging(0.786) TCGA-W3-AA1V-06 12 121098607 121098607 G A CABP1 Missense_Mutation p.M301I 0.27 deleterious(0) benign(0.013) TCGA-W3-AA1V-06 12 121416766 121416766 G A HNF1A Silent p.G65G 0.30 TCGA-W3-AA1V-06 12 121416857 121416857 G A HNF1A Missense_Mutation p.E96K 0.32 deleterious(0) benign(0.125) TCGA-W3-AA1V-06 12 121426635 121426635 G A HNF1A Splice_Site p.X109_splice 0.28 TCGA-W3-AA1V-06 12 121435386 121435386 G A HNF1A Silent p.Q473Q 0.62 TCGA-W3-AA1V-06 12 121458760 121458760 G A OASL Silent p.I383I 0.23 TCGA-W3-AA1V-06 12 121465516 121465516 G A OASL Silent p.F254F 0.10 TCGA-W3-AA1V-06 12 121469308 121469308 G A OASL Silent p.F198F 0.57 TCGA-W3-AA1V-06 12 121471457 121471457 C A OASL Missense_Mutation p.E96D 0.23 tolerated(0.67) benign(0.285) TCGA-W3-AA1V-06 12 121712178 121712178 G A CAMKK2 Missense_Mutation p.S51F 0.17 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-W3-AA1V-06 12 121746324 121746324 C T ANAPC5 Missense_Mutation p.E743K 0.23 deleterious(0.03) possibly_damaging(0.853) TCGA-W3-AA1V-06 12 121746325 121746325 C T ANAPC5 Silent p.Q742Q 0.23 TCGA-W3-AA1V-06 12 121879011 121879011 G T KDM2B Missense_Mutation p.R1104S 0.20 tolerated(0.06) benign(0.209) TCGA-W3-AA1V-06 12 121970712 121970712 G A KDM2B Silent p.S310S 0.57 TCGA-W3-AA1V-06 12 121970713 121970713 G A KDM2B Missense_Mutation p.S310F 0.56 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 121972433 121972433 G A KDM2B Missense_Mutation p.S249F 0.53 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1V-06 12 122079399 122079399 C T ORAI1 Silent p.V254V 0.20 TCGA-W3-AA1V-06 12 12268228 12268228 G A LRP6 3'Flank 0.32 TCGA-W3-AA1V-06 12 123201090 123201090 G A HCAR3 Silent p.F65F 0.61 TCGA-W3-AA1V-06 12 123238271 123238271 C T DENR Missense_Mutation p.S8F 0.62 deleterious_low_confidence(0.01) benign(0.116) TCGA-W3-AA1V-06 12 123285843 123285843 G A CCDC62 Missense_Mutation p.D384N 0.47 tolerated(1) benign(0) TCGA-W3-AA1V-06 12 123463486 123463486 G A OGFOD2 Missense_Mutation p.E180K 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 12 123804991 123804991 C T SBNO1 Silent p.E885E 0.27 TCGA-W3-AA1V-06 12 123815016 123815016 C G SBNO1 Missense_Mutation p.D362H 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 123875317 123875317 C A SETD8 Silent p.I91I 0.16 TCGA-W3-AA1V-06 12 124311446 124311446 G A DNAH10 Splice_Site p.X1346_splice 0.40 TCGA-W3-AA1V-06 12 124317737 124317737 G A DNAH10 Missense_Mutation p.R1423Q 0.71 possibly_damaging(0.821) TCGA-W3-AA1V-06 12 124821373 124821373 G A NCOR2 Missense_Mutation p.S2014L 0.40 possibly_damaging(0.905) TCGA-W3-AA1V-06 12 125267263 125267263 G A SCARB1 Missense_Mutation p.P499L 0.71 deleterious_low_confidence(0.01) benign(0.318) TCGA-W3-AA1V-06 12 125437028 125437028 G A DHX37 Silent p.I928I 0.35 TCGA-W3-AA1V-06 12 129559056 129559056 G A TMEM132D Silent p.F888F 0.35 TCGA-W3-AA1V-06 12 129563102 129563102 C T TMEM132D Missense_Mutation p.E698K 0.35 deleterious(0) possibly_damaging(0.465) TCGA-W3-AA1V-06 12 129566319 129566319 C T TMEM132D Silent p.G636G 0.33 TCGA-W3-AA1V-06 12 129694174 129694174 C T TMEM132D Missense_Mutation p.G445E 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 130648081 130648081 C T FZD10 Silent p.F198F 0.19 TCGA-W3-AA1V-06 12 13065584 13065584 G A GPRC5A 3'UTR 0.56 TCGA-W3-AA1V-06 12 130926480 130926480 C T RIMBP2 Missense_Mutation p.A456T 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 130926481 130926481 C T RIMBP2 Silent p.L455L 0.21 TCGA-W3-AA1V-06 12 130926621 130926621 G A RIMBP2 Missense_Mutation p.L409F 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 130929789 130929789 C T RIMBP2 Missense_Mutation p.E186K 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 132497578 132497578 C T EP400 Missense_Mutation p.H1156Y 0.26 unknown(0) TCGA-W3-AA1V-06 12 132688193 132688193 G A GALNT9 Missense_Mutation p.R8C 0.25 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 12 132688194 132688194 G A GALNT9 Silent p.S7S 0.25 TCGA-W3-AA1V-06 12 133385019 133385019 G A GOLGA3 Silent p.F212F 0.43 TCGA-W3-AA1V-06 12 133764599 133764599 G A ZNF268 Missense_Mutation p.E59K 0.14 tolerated_low_confidence(0.68) benign(0.077) TCGA-W3-AA1V-06 12 133780560 133780560 G A ZNF268 Missense_Mutation p.R763K 0.33 tolerated(0.2) benign(0.058) TCGA-W3-AA1V-06 12 13715621 13715621 G A GRIN2B 3'UTR 0.33 TCGA-W3-AA1V-06 12 13717555 13717555 G A GRIN2B Missense_Mutation p.H873Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 12 14659914 14659914 C T PLBD1 Missense_Mutation p.G442E 0.28 deleterious(0.01) probably_damaging(0.956) TCGA-W3-AA1V-06 12 14660052 14660052 C A PLBD1 Missense_Mutation p.G396V 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 14695180 14695180 C T PLBD1 Silent p.T127T 0.39 TCGA-W3-AA1V-06 12 14804963 14804963 C T GUCY2C Missense_Mutation p.R512Q 0.26 tolerated(0.49) benign(0.298) TCGA-W3-AA1V-06 12 15095439 15095439 G A ARHGDIB 3'UTR 0.27 TCGA-W3-AA1V-06 12 15668468 15668468 C T PTPRO Missense_Mutation p.P501S 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 15774321 15774321 C T EPS8 Missense_Mutation p.R800Q 0.29 tolerated(0.08) probably_damaging(0.996) TCGA-W3-AA1V-06 12 1755059 1755059 G A WNT5B Missense_Mutation p.V241I 0.50 tolerated(0.4) probably_damaging(0.996) TCGA-W3-AA1V-06 12 18719955 18719955 G A PIK3C2G Missense_Mutation p.M1284I 0.19 tolerated(0.71) benign(0.05) TCGA-W3-AA1V-06 12 18800927 18800927 G A PIK3C2G Missense_Mutation p.E1435K 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 18800928 18800928 A C PIK3C2G Missense_Mutation p.E1435A 0.35 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 18852879 18852879 C T PLCZ1 Silent p.R341R 0.29 TCGA-W3-AA1V-06 12 18872393 18872393 C T PLCZ1 Missense_Mutation p.G181R 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 18891730 18891730 C T CAPZA3 Silent p.F176F 0.44 TCGA-W3-AA1V-06 12 19514580 19514580 C T PLEKHA5 Missense_Mutation p.S1183F 0.37 deleterious(0) benign(0.187) TCGA-W3-AA1V-06 12 1995413 1995413 C T CACNA2D4 Silent p.E323E 0.23 TCGA-W3-AA1V-06 12 1995414 1995414 T A CACNA2D4 Missense_Mutation p.E323V 0.21 deleterious(0) possibly_damaging(0.828) TCGA-W3-AA1V-06 12 2058460 2058460 G A DCP1B Missense_Mutation p.S522F 0.53 deleterious(0) possibly_damaging(0.867) TCGA-W3-AA1V-06 12 20792840 20792840 G A PDE3A Missense_Mutation p.E734K 0.33 deleterious(0.01) benign(0.082) TCGA-W3-AA1V-06 12 20852529 20852529 G T SLCO1C1 Nonsense_Mutation p.E7* 0.27 TCGA-W3-AA1V-06 12 20852530 20852530 A G SLCO1C1 Missense_Mutation p.E7G 0.37 deleterious_low_confidence(0) possibly_damaging(0.52) TCGA-W3-AA1V-06 12 20968676 20968676 G A LST3 Missense_Mutation p.D2N 0.53 deleterious(0.01) possibly_damaging(0.632) TCGA-W3-AA1V-06 12 21172262 21172262 C T SLCO1B7 Missense_Mutation p.L56F 0.32 deleterious(0) benign(0.135) TCGA-W3-AA1V-06 12 21172306 21172306 C T SLCO1B7 Silent p.F70F 0.45 TCGA-W3-AA1V-06 12 21350096 21350096 G A SLCO1B1 Missense_Mutation p.G315E 0.16 tolerated(1) benign(0.009) TCGA-W3-AA1V-06 12 21355470 21355470 G A SLCO1B1 Missense_Mutation p.G394E 0.27 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 12 21445140 21445140 A T SLCO1A2 Missense_Mutation p.I523N 0.32 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 12 21471805 21471805 G C SLCO1A2 Missense_Mutation p.S38C 0.25 deleterious(0.01) possibly_damaging(0.897) TCGA-W3-AA1V-06 12 21471851 21471851 G A SLCO1A2 Silent p.L23L 0.28 TCGA-W3-AA1V-06 12 21472381 21472381 G A SLCO1A2 Intron 0.33 TCGA-W3-AA1V-06 12 21593318 21593318 C T PYROXD1 Missense_Mutation p.P34L 0.28 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 12 21665283 21665283 C T GOLT1B Silent p.S117S 0.26 TCGA-W3-AA1V-06 12 21715866 21715866 T G GYS2 Missense_Mutation p.N350H 0.39 deleterious(0) possibly_damaging(0.863) TCGA-W3-AA1V-06 12 21918852 21918852 C T KCNJ8 Silent p.E360E 0.44 TCGA-W3-AA1V-06 12 22078946 22078946 G A ABCC9 Silent p.F112F 0.19 TCGA-W3-AA1V-06 12 25357270 25357270 T G LYRM5 3'UTR 0.42 TCGA-W3-AA1V-06 12 25672870 25672870 A G IFLTD1 Missense_Mutation p.I313T 0.43 tolerated(0.31) benign(0.119) TCGA-W3-AA1V-06 12 25672871 25672871 T G IFLTD1 Missense_Mutation p.I313L 0.42 tolerated(0.3) benign(0.025) TCGA-W3-AA1V-06 12 27234159 27234159 C T C12orf71 Missense_Mutation p.R253K 0.34 deleterious(0.05) benign(0.187) TCGA-W3-AA1V-06 12 27543024 27543024 G A ARNTL2 Intron 0.28 TCGA-W3-AA1V-06 12 2774154 2774154 C T CACNA1C Silent p.L1514L 0.29 TCGA-W3-AA1V-06 12 27869234 27869234 C T MRPS35 Missense_Mutation p.P55L 0.27 deleterious(0.01) benign(0.263) TCGA-W3-AA1V-06 12 29671406 29671406 G A TMTC1 Missense_Mutation p.R675C 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 31555571 31555571 G A DENND5B Missense_Mutation p.P937L 0.36 deleterious(0) probably_damaging(0.91) TCGA-W3-AA1V-06 12 32134868 32134868 C T KIAA1551 Missense_Mutation p.P327S 0.26 tolerated(0.26) benign(0.017) TCGA-W3-AA1V-06 12 32135922 32135922 C T KIAA1551 Missense_Mutation p.S678F 0.38 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 12 32955417 32955417 A G PKP2 Missense_Mutation p.V740A 0.31 tolerated(0.25) benign(0.024) TCGA-W3-AA1V-06 12 33031384 33031384 G A PKP2 Missense_Mutation p.P144S 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 33031910 33031910 C T PKP2 Missense_Mutation p.E94K 0.27 tolerated(0.08) possibly_damaging(0.83) TCGA-W3-AA1V-06 12 33535372 33535372 G A SYT10 Missense_Mutation p.P428S 0.27 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 12 33535406 33535406 C T SYT10 Silent p.K416K 0.22 TCGA-W3-AA1V-06 12 33560148 33560148 G A SYT10 Missense_Mutation p.S218L 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1V-06 12 33560247 33560247 G A SYT10 Missense_Mutation p.S185F 0.43 deleterious(0) possibly_damaging(0.732) TCGA-W3-AA1V-06 12 3392240 3392240 C T TSPAN9 Silent p.L226L 0.54 TCGA-W3-AA1V-06 12 3392300 3392300 G A TSPAN9 3'UTR 0.32 TCGA-W3-AA1V-06 12 34179674 34179674 C T ALG10 Missense_Mutation p.R416C 0.58 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 3931309 3931309 T C PARP11 Missense_Mutation p.N120S 0.39 tolerated(0.39) possibly_damaging(0.857) TCGA-W3-AA1V-06 12 40114710 40114710 G A C12orf40 Missense_Mutation p.R539K 0.66 tolerated(1) benign(0.023) TCGA-W3-AA1V-06 12 40153875 40153875 C T SLC2A13 Missense_Mutation p.G634R 0.22 deleterious(0) possibly_damaging(0.825) TCGA-W3-AA1V-06 12 40645081 40645081 C T LRRK2 Nonsense_Mutation p.Q336* 0.64 TCGA-W3-AA1V-06 12 40709025 40709025 C T LRRK2 Missense_Mutation p.H1584Y 0.35 deleterious(0) possibly_damaging(0.656) TCGA-W3-AA1V-06 12 40748146 40748146 C A LRRK2 Missense_Mutation p.P2208T 0.68 deleterious(0.01) benign(0.009) TCGA-W3-AA1V-06 12 41330674 41330674 C T CNTN1 Silent p.I359I 0.79 TCGA-W3-AA1V-06 12 41463776 41463776 C T CNTN1 Missense_Mutation p.S999F 0.35 tolerated_low_confidence(0.07) benign(0.012) TCGA-W3-AA1V-06 12 416854 416854 G A KDM5A Silent p.S1232S 0.35 TCGA-W3-AA1V-06 12 41967063 41967063 C T PDZRN4 Missense_Mutation p.P828S 0.33 tolerated(0.09) benign(0.104) TCGA-W3-AA1V-06 12 42716240 42716240 G A ZCRB1 Silent p.S31S 0.33 TCGA-W3-AA1V-06 12 430171 430171 C A KDM5A Missense_Mutation p.R844L 0.42 tolerated(0.16) benign(0.075) TCGA-W3-AA1V-06 12 45169868 45169868 C T NELL2 Missense_Mutation p.M326I 0.73 tolerated(0.2) benign(0.004) TCGA-W3-AA1V-06 12 4543370 4543370 T A FGF6 3'UTR 0.21 TCGA-W3-AA1V-06 12 4543371 4543371 T G FGF6 3'UTR 0.20 TCGA-W3-AA1V-06 12 4554690 4554690 C T FGF6 Missense_Mutation p.G16E 0.47 tolerated_low_confidence(0.22) benign(0.013) TCGA-W3-AA1V-06 12 46591510 46591510 C T SLC38A1 Missense_Mutation p.R452K 0.51 tolerated(1) probably_damaging(0.989) TCGA-W3-AA1V-06 12 46591519 46591519 C T SLC38A1 Missense_Mutation p.G449E 0.76 deleterious(0.04) benign(0.003) TCGA-W3-AA1V-06 12 46622987 46622987 C T SLC38A1 Missense_Mutation p.G88E 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 47162099 47162099 C T SLC38A4 Silent p.K512K 0.43 TCGA-W3-AA1V-06 12 47172362 47172362 A C SLC38A4 Silent p.S305S 0.68 TCGA-W3-AA1V-06 12 47629725 47629725 C T PCED1B Silent p.P293P 0.77 TCGA-W3-AA1V-06 12 48063957 48063957 G A RPAP3 Missense_Mutation p.P487S 0.74 tolerated(0.14) probably_damaging(0.968) TCGA-W3-AA1V-06 12 48134026 48134026 C T RAPGEF3 Intron 0.81 TCGA-W3-AA1V-06 12 48249464 48249464 C T VDR Missense_Mutation p.S285N 0.30 deleterious(0) possibly_damaging(0.837) TCGA-W3-AA1V-06 12 4830039 4830039 G A GALNT8 Missense_Mutation p.E66K 0.30 tolerated(0.38) benign(0.026) TCGA-W3-AA1V-06 12 4881665 4881665 C T GALNT8 Missense_Mutation p.L606F 0.22 deleterious(0.05) benign(0.206) TCGA-W3-AA1V-06 12 48866464 48866464 G A ANP32D Nonsense_Mutation p.W6* 0.60 TCGA-W3-AA1V-06 12 4920414 4920414 G A KCNA6 Missense_Mutation p.D403N 0.22 tolerated(0.37) possibly_damaging(0.54) TCGA-W3-AA1V-06 12 493250 493250 G A KDM5A Silent p.L105L 0.19 TCGA-W3-AA1V-06 12 49415622 49415622 C T KMT2D Missense_Mutation p.D5519N 0.39 unknown(0) TCGA-W3-AA1V-06 12 49444513 49444513 G A KMT2D Missense_Mutation p.P953L 0.78 unknown(0) TCGA-W3-AA1V-06 12 49488035 49488035 G A DHH Silent p.F87F 0.34 TCGA-W3-AA1V-06 12 49495065 49495065 G A LMBR1L Silent p.S350S 0.71 TCGA-W3-AA1V-06 12 49579361 49579361 G A TUBA1A Missense_Mutation p.P263L 0.58 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-W3-AA1V-06 12 49717495 49717495 T C TROAP Missense_Mutation p.V35A 0.24 tolerated(1) benign(0.041) TCGA-W3-AA1V-06 12 49742648 49742648 C T DNAJC22 5'UTR 0.39 TCGA-W3-AA1V-06 12 51279190 51279190 C T TMPRSS12 Intron 0.76 TCGA-W3-AA1V-06 12 51389482 51389482 G A SLC11A2 Missense_Mutation p.S336F 0.31 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 12 52777498 52777498 C T KRT84 Missense_Mutation p.E211K 0.36 deleterious(0) possibly_damaging(0.887) TCGA-W3-AA1V-06 12 52799940 52799940 C T KRT82 Missense_Mutation p.G41E 0.42 deleterious(0) benign(0.36) TCGA-W3-AA1V-06 12 52825348 52825348 G A KRT75 Silent p.F283F 0.34 TCGA-W3-AA1V-06 12 52881854 52881854 G A KRT6A Silent p.I486I 0.45 TCGA-W3-AA1V-06 12 52884693 52884693 C T KRT6A Silent p.K287K 0.44 TCGA-W3-AA1V-06 12 52885370 52885370 C T KRT6A Missense_Mutation p.E231K 0.24 deleterious(0.02) benign(0.377) TCGA-W3-AA1V-06 12 52885385 52885385 C T KRT6A Missense_Mutation p.D226N 0.24 tolerated(0.12) possibly_damaging(0.652) TCGA-W3-AA1V-06 12 52941732 52941732 C T KRT71 Missense_Mutation p.G338E 0.40 deleterious(0.01) possibly_damaging(0.558) TCGA-W3-AA1V-06 12 52946785 52946785 C T KRT71 Missense_Mutation p.G26E 0.78 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA1V-06 12 52967156 52967156 C T KRT74 Missense_Mutation p.V136M 0.73 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 12 53038960 53038960 C T KRT2 Missense_Mutation p.G588E 0.76 deleterious_low_confidence(0.01) unknown(0) TCGA-W3-AA1V-06 12 53073598 53073598 G A KRT1 Nonsense_Mutation p.R179* 0.33 TCGA-W3-AA1V-06 12 53162588 53162588 C T KRT76 Missense_Mutation p.G609E 0.33 tolerated_low_confidence(0.09) unknown(0) TCGA-W3-AA1V-06 12 53207970 53207970 G A KRT4 5'UTR 0.73 TCGA-W3-AA1V-06 12 53468951 53468951 G A SPRYD3 Missense_Mutation p.P100L 0.67 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 12 53677911 53677911 G A ESPL1 Silent p.S1049S 0.31 TCGA-W3-AA1V-06 12 53687166 53687166 T C ESPL1 Missense_Mutation p.Y2091H 0.30 tolerated(0.56) benign(0.002) TCGA-W3-AA1V-06 12 54448845 54448845 C T HOXC4 Silent p.L217L 0.62 TCGA-W3-AA1V-06 12 54743429 54743429 A C COPZ1 Missense_Mutation p.Q158P 0.71 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1V-06 12 54963036 54963036 A T PDE1B Missense_Mutation p.D99V 0.43 deleterious(0) probably_damaging(0.913) TCGA-W3-AA1V-06 12 54967167 54967167 C T PDE1B Missense_Mutation p.R289C 0.67 deleterious(0) probably_damaging(0.957) TCGA-W3-AA1V-06 12 549785 549785 C T CCDC77 Silent p.S348S 0.39 TCGA-W3-AA1V-06 12 55025525 55025525 C T LACRT Missense_Mutation p.E118K 0.65 tolerated_low_confidence(0.18) possibly_damaging(0.502) TCGA-W3-AA1V-06 12 55641640 55641640 C T OR6C74 Missense_Mutation p.T190I 0.75 deleterious_low_confidence(0.01) benign(0.039) TCGA-W3-AA1V-06 12 55688987 55688987 G A OR6C6 Silent p.F10F 0.68 TCGA-W3-AA1V-06 12 55794848 55794848 C T OR6C65 Missense_Mutation p.S179F 0.40 tolerated_low_confidence(0.58) possibly_damaging(0.816) TCGA-W3-AA1V-06 12 55846855 55846855 C T OR6C2 Silent p.F286F 0.62 TCGA-W3-AA1V-06 12 56077728 56077728 G A METTL7B Silent p.K210K 0.20 TCGA-W3-AA1V-06 12 56088075 56088075 G A ITGA7 Silent p.A803A 0.42 TCGA-W3-AA1V-06 12 56347546 56347546 G T DGKA Missense_Mutation p.L734F 0.76 tolerated_low_confidence(0.48) benign(0.002) TCGA-W3-AA1V-06 12 56514577 56514577 C T ZC3H10 Silent p.I77I 0.30 TCGA-W3-AA1V-06 12 56743017 56743017 G A STAT2 Missense_Mutation p.S457F 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 56847424 56847424 G A MIP Missense_Mutation p.S159F 0.80 deleterious(0.01) probably_damaging(0.962) TCGA-W3-AA1V-06 12 57345989 57345989 C T RDH16 Missense_Mutation p.D260N 0.36 tolerated(0.61) benign(0.004) TCGA-W3-AA1V-06 12 57346763 57346763 G A RDH16 Missense_Mutation p.S195F 0.36 tolerated(0.59) benign(0.048) TCGA-W3-AA1V-06 12 5756896 5756896 G A ANO2 Silent p.F539F 0.54 TCGA-W3-AA1V-06 12 57660558 57660558 G A R3HDM2 Missense_Mutation p.S682F 0.25 deleterious(0) possibly_damaging(0.779) TCGA-W3-AA1V-06 12 57865852 57865852 G A GLI1 3'UTR 0.45 TCGA-W3-AA1V-06 12 57872388 57872388 G A ARHGAP9 Nonsense_Mutation p.Q157* 0.68 TCGA-W3-AA1V-06 12 57910847 57910847 G A DDIT3 Silent p.S108S 0.06 TCGA-W3-AA1V-06 12 57910848 57910848 G A DDIT3 Missense_Mutation p.S108F 0.06 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 12 57928183 57928183 G A DCTN2 Missense_Mutation p.A144V 0.11 tolerated(0.07) benign(0.331) TCGA-W3-AA1V-06 12 57970130 57970130 G A KIF5A Missense_Mutation p.E723K 0.16 tolerated(0.15) benign(0.18) TCGA-W3-AA1V-06 12 57975246 57975246 C T KIF5A Missense_Mutation p.P935L 0.78 tolerated(0.17) benign(0.368) TCGA-W3-AA1V-06 12 57994786 57994786 A G PIP4K2C Missense_Mutation p.I336V 0.13 tolerated(0.23) benign(0.102) TCGA-W3-AA1V-06 12 58013905 58013905 A C SLC26A10 5'UTR 0.13 TCGA-W3-AA1V-06 12 58013906 58013906 G A SLC26A10 5'UTR 0.13 TCGA-W3-AA1V-06 12 58087910 58087910 G A OS9 5'UTR 0.10 TCGA-W3-AA1V-06 12 58088696 58088696 C T OS9 Missense_Mutation p.P109L 0.77 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 12 58163174 58163174 G A METTL1 Missense_Mutation p.T196I 0.73 deleterious(0.02) benign(0.401) TCGA-W3-AA1V-06 12 59272831 59272831 C T LRIG3 Missense_Mutation p.A620T 0.07 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 59284503 59284503 G A LRIG3 Silent p.S153S 0.54 TCGA-W3-AA1V-06 12 6030316 6030316 C T ANO2 Missense_Mutation p.D138N 0.42 tolerated(0.18) benign(0.156) TCGA-W3-AA1V-06 12 6061031 6061031 G A VWF Missense_Mutation p.P2712S 0.54 tolerated(0.17) possibly_damaging(0.857) TCGA-W3-AA1V-06 12 6125812 6125812 G A VWF Silent p.L1727L 0.55 TCGA-W3-AA1V-06 12 6125817 6125817 G A VWF Missense_Mutation p.R1726C 0.54 tolerated(0.06) benign(0.002) TCGA-W3-AA1V-06 12 6125929 6125929 C T VWF Missense_Mutation p.A1721T 0.30 tolerated(0.18) probably_damaging(0.945) TCGA-W3-AA1V-06 12 6153601 6153601 G A VWF Silent p.S766S 0.38 TCGA-W3-AA1V-06 12 62775346 62775346 C T USP15 Missense_Mutation p.P331S 0.34 deleterious(0.01) probably_damaging(0.947) TCGA-W3-AA1V-06 12 62786128 62786128 T G USP15 Missense_Mutation p.L794R 0.19 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 12 64017868 64017868 G A DPY19L2 Missense_Mutation p.S302F 0.53 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 12 6457890 6457890 T C SCNN1A Intron 0.28 TCGA-W3-AA1V-06 12 6458352 6458352 C T SCNN1A Missense_Mutation p.R551Q 0.57 tolerated(0.1) benign(0.103) TCGA-W3-AA1V-06 12 64616011 64616011 C T C12orf66 Missense_Mutation p.E3K 0.45 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-W3-AA1V-06 12 64660963 64660963 C T C12orf56 Silent p.%3D 0.75 TCGA-W3-AA1V-06 12 64679780 64679780 C T C12orf56 Missense_Mutation p.D232N 0.24 tolerated(0.28) benign(0.138) TCGA-W3-AA1V-06 12 64812760 64812760 T A XPOT Missense_Mutation p.F125L 0.38 tolerated(0.09) possibly_damaging(0.774) TCGA-W3-AA1V-06 12 6499294 6499294 C T LTBR Missense_Mutation p.P273L 0.21 tolerated(0.23) benign(0.071) TCGA-W3-AA1V-06 12 6631072 6631072 C T NCAPD2 Missense_Mutation p.S608F 0.47 deleterious(0.02) benign(0.004) TCGA-W3-AA1V-06 12 6632110 6632110 G A NCAPD2 Missense_Mutation p.E691K 0.28 tolerated(0.12) benign(0.102) TCGA-W3-AA1V-06 12 6637401 6637401 C T NCAPD2 Missense_Mutation p.P1069L 0.47 deleterious(0) probably_damaging(0.931) TCGA-W3-AA1V-06 12 6666269 6666269 G A NOP2 Missense_Mutation p.P810S 0.26 tolerated_low_confidence(0.14) benign(0.009) TCGA-W3-AA1V-06 12 6666270 6666270 G A NOP2 Silent p.T809T 0.26 TCGA-W3-AA1V-06 12 66731871 66731871 C T HELB Nonsense_Mutation p.Q1085* 0.70 TCGA-W3-AA1V-06 12 6675453 6675453 G A NOP2 Silent p.S96S 0.56 TCGA-W3-AA1V-06 12 6749630 6749630 G A ACRBP Missense_Mutation p.S379F 0.26 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 12 6752723 6752723 G A ACRBP Silent p.I353I 0.49 TCGA-W3-AA1V-06 12 68551838 68551838 G A IFNG Missense_Mutation p.S74F 0.14 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 12 68696632 68696632 G A MDM1 Silent p.S580S 0.47 TCGA-W3-AA1V-06 12 6946211 6946211 T G LEPREL2 Missense_Mutation p.H506Q 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 12 6958841 6958841 G A CDCA3 Silent p.F144F 0.50 TCGA-W3-AA1V-06 12 6964636 6964636 T A USP5 Missense_Mutation p.H61Q 0.61 deleterious(0.03) benign(0.014) TCGA-W3-AA1V-06 12 69742256 69742256 G A LYZ Missense_Mutation p.R23K 0.21 tolerated(0.14) benign(0.011) TCGA-W3-AA1V-06 12 69742257 69742257 G A LYZ Silent p.R23R 0.21 TCGA-W3-AA1V-06 12 70194000 70194000 C T RAB3IP Silent p.S316S 0.11 TCGA-W3-AA1V-06 12 70913988 70913988 C T PTPRB 3'UTR 0.21 TCGA-W3-AA1V-06 12 70932775 70932775 C T PTPRB Missense_Mutation p.R1933Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 12 70946612 70946612 C T PTPRB Missense_Mutation p.D1778N 0.06 deleterious(0.02) benign(0.145) TCGA-W3-AA1V-06 12 70954463 70954463 C T PTPRB Missense_Mutation p.E1474K 0.11 tolerated(0.52) benign(0.139) TCGA-W3-AA1V-06 12 70954554 70954554 C T PTPRB Silent p.T1443T 0.07 TCGA-W3-AA1V-06 12 70986317 70986317 C T PTPRB Missense_Mutation p.E509K 0.84 tolerated(0.58) benign(0.046) TCGA-W3-AA1V-06 12 71032942 71032942 G T PTPRR 3'UTR 0.82 TCGA-W3-AA1V-06 12 71033026 71033026 C T PTPRR Missense_Mutation p.E638K 0.13 deleterious(0.02) benign(0.074) TCGA-W3-AA1V-06 12 71078003 71078003 G A PTPRR Silent p.G467G 0.10 TCGA-W3-AA1V-06 12 71551503 71551503 C T TSPAN8 5'UTR 0.12 TCGA-W3-AA1V-06 12 7177493 7177493 G A C1S Silent p.L535L 0.24 TCGA-W3-AA1V-06 12 72366419 72366419 C T TPH2 Silent p.F243F 0.67 TCGA-W3-AA1V-06 12 72680510 72680510 C T TRHDE Missense_Mutation p.P277S 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 7277279 7277279 C T RBP5 Silent p.G100G 0.36 TCGA-W3-AA1V-06 12 7285714 7285714 G A CLSTN3 Silent p.L53L 0.23 TCGA-W3-AA1V-06 12 73046254 73046254 G A TRHDE Missense_Mutation p.R898K 0.08 tolerated(0.08) benign(0.314) TCGA-W3-AA1V-06 12 7457054 7457054 C T ACSM4 Missense_Mutation p.R43C 0.55 deleterious(0.03) possibly_damaging(0.696) TCGA-W3-AA1V-06 12 7527071 7527071 T A CD163L1 Missense_Mutation p.R1126W 0.31 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 12 7528138 7528138 C T CD163L1 Missense_Mutation p.E914K 0.25 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 12 7551097 7551097 C T CD163L1 Missense_Mutation p.G498R 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 7585271 7585271 C T CD163L1 Silent p.E169E 0.57 TCGA-W3-AA1V-06 12 75875789 75875789 G A GLIPR1 Nonsense_Mutation p.W117* 0.53 TCGA-W3-AA1V-06 12 7653921 7653921 G A CD163 Nonsense_Mutation p.Q91* 0.19 TCGA-W3-AA1V-06 12 7843045 7843045 G A GDF3 Missense_Mutation p.P175L 0.39 tolerated(0.55) probably_damaging(0.996) TCGA-W3-AA1V-06 12 7966778 7966778 G A SLC2A14 3'UTR 0.25 TCGA-W3-AA1V-06 12 79685880 79685880 T A SYT1 Nonsense_Mutation p.Y148* 0.35 TCGA-W3-AA1V-06 12 7970627 7970627 G A SLC2A14 Missense_Mutation p.H382Y 0.33 deleterious(0.02) benign(0.056) TCGA-W3-AA1V-06 12 80647318 80647318 C T OTOGL Missense_Mutation p.S444L 0.81 tolerated(0.07) benign(0.103) TCGA-W3-AA1V-06 12 80729796 80729796 G A OTOGL Missense_Mutation p.M1483I 0.46 deleterious(0.03) benign(0.154) TCGA-W3-AA1V-06 12 80730314 80730314 C T OTOGL Silent p.I1565I 0.28 TCGA-W3-AA1V-06 12 80749702 80749702 G A OTOGL Nonsense_Mutation p.W1918* 0.31 TCGA-W3-AA1V-06 12 81111175 81111175 G A MYF5 Silent p.T111T 0.79 TCGA-W3-AA1V-06 12 81112856 81112856 C T MYF5 3'UTR 0.43 TCGA-W3-AA1V-06 12 81593149 81593149 G A ACSS3 Missense_Mutation p.R427Q 0.25 deleterious(0) benign(0.231) TCGA-W3-AA1V-06 12 81647096 81647096 C T ACSS3 Missense_Mutation p.S577F 0.76 tolerated(0.1) benign(0.006) TCGA-W3-AA1V-06 12 8212673 8212673 C T C3AR1 Missense_Mutation p.G37R 0.60 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 85432048 85432048 G A LRRIQ1 Missense_Mutation p.D32N 0.40 deleterious(0.01) probably_damaging(0.929) TCGA-W3-AA1V-06 12 85434284 85434284 C T LRRIQ1 Missense_Mutation p.P50L 0.69 deleterious(0.01) benign(0.267) TCGA-W3-AA1V-06 12 85518029 85518029 G A LRRIQ1 Missense_Mutation p.G1247R 0.28 tolerated(0.8) benign(0.002) TCGA-W3-AA1V-06 12 8630111 8630111 C T CLEC6A 3'UTR 0.18 TCGA-W3-AA1V-06 12 86373909 86373909 G A MGAT4C Missense_Mutation p.R199C 0.72 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 12 8689801 8689801 A C CLEC4E Missense_Mutation p.F94L 0.25 tolerated(1) possibly_damaging(0.859) TCGA-W3-AA1V-06 12 8693377 8693377 G A CLEC4E Missense_Mutation p.S6L 0.20 tolerated(0.17) benign(0.003) TCGA-W3-AA1V-06 12 8814667 8814667 G A MFAP5 Missense_Mutation p.L12F 0.21 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 12 88379774 88379774 G A C12orf50 Nonsense_Mutation p.R327* 0.68 TCGA-W3-AA1V-06 12 89984846 89984846 C T ATP2B1 Missense_Mutation p.G1193E 0.43 tolerated_low_confidence(0.12) benign(0.232) TCGA-W3-AA1V-06 12 9021758 9021758 G A A2ML1 Missense_Mutation p.V1394I 0.29 tolerated(0.41) benign(0.03) TCGA-W3-AA1V-06 12 9085239 9085239 C T PHC1 Nonsense_Mutation p.Q396* 0.23 TCGA-W3-AA1V-06 12 91497849 91497849 C T LUM 3'UTR 0.33 TCGA-W3-AA1V-06 12 93149613 93149613 G A PLEKHG7 Missense_Mutation p.G168E 0.38 deleterious(0) benign(0.403) TCGA-W3-AA1V-06 12 9353498 9353498 C T PZP Silent p.V220V 0.41 TCGA-W3-AA1V-06 12 94976130 94976130 G A TMCC3 Missense_Mutation p.S88L 0.46 deleterious(0.04) benign(0.327) TCGA-W3-AA1V-06 12 96063905 96063905 C T NTN4 Missense_Mutation p.E510K 0.42 deleterious(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 12 97133838 97133838 C T C12orf55 Missense_Mutation p.S2357F 0.54 tolerated(0.68) benign(0.183) TCGA-W3-AA1V-06 12 990061 990061 C T WNK1 Missense_Mutation p.L1003F 0.28 tolerated(0.24) possibly_damaging(0.67) TCGA-W3-AA1V-06 12 99145189 99145189 C T ANKS1B Missense_Mutation p.E1206K 0.43 deleterious(0.02) possibly_damaging(0.722) TCGA-W3-AA1V-06 12 99640173 99640173 G A ANKS1B Silent p.L742L 0.40 TCGA-W3-AA1V-06 13 101710362 101710362 C T NALCN Missense_Mutation p.G1651E 0.27 tolerated(0.37) benign(0.025) TCGA-W3-AA1V-06 13 101720281 101720281 C T NALCN Missense_Mutation p.D1479N 0.36 tolerated(0.53) benign(0.017) TCGA-W3-AA1V-06 13 101720294 101720294 C T NALCN Nonsense_Mutation p.W1474* 0.42 TCGA-W3-AA1V-06 13 101760054 101760054 C T NALCN Missense_Mutation p.M817I 0.35 tolerated(0.4) benign(0.023) TCGA-W3-AA1V-06 13 103513997 103513997 C T BIVM-ERCC5 Silent p.G697G 0.30 TCGA-W3-AA1V-06 13 103703771 103703771 G A SLC10A2 Silent p.I199I 0.38 TCGA-W3-AA1V-06 13 108518297 108518297 C T FAM155A Nonsense_Mutation p.W216* 0.30 TCGA-W3-AA1V-06 13 108518469 108518469 C T FAM155A Missense_Mutation p.G159E 0.57 tolerated(0.14) probably_damaging(1) TCGA-W3-AA1V-06 13 108518821 108518821 G A FAM155A Silent p.L42L 0.38 TCGA-W3-AA1V-06 13 108863429 108863429 G A LIG4 Missense_Mutation p.S63F 0.32 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 13 109318261 109318261 G A MYO16 5'UTR 0.33 TCGA-W3-AA1V-06 13 109562479 109562479 A T MYO16 Missense_Mutation p.N614Y 0.31 deleterious(0) possibly_damaging(0.707) TCGA-W3-AA1V-06 13 109617133 109617133 C T MYO16 Missense_Mutation p.T729I 0.35 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 13 110829072 110829072 C T COL4A1 Splice_Site p.X957_splice 0.39 TCGA-W3-AA1V-06 13 110845221 110845221 C T COL4A1 Missense_Mutation p.G474E 0.60 probably_damaging(0.982) TCGA-W3-AA1V-06 13 111134960 111134960 C T COL4A2 Silent p.F952F 0.31 TCGA-W3-AA1V-06 13 111995143 111995143 G A TEX29 Missense_Mutation p.D94N 0.44 tolerated(0.12) possibly_damaging(0.728) TCGA-W3-AA1V-06 13 113964158 113964158 C T LAMP1 Silent p.F128F 0.23 TCGA-W3-AA1V-06 13 113999229 113999229 C T GRTP1 Missense_Mutation p.E171K 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 13 114307244 114307244 C T ATP4B Missense_Mutation p.D167N 0.35 deleterious(0.02) possibly_damaging(0.489) TCGA-W3-AA1V-06 13 114472084 114472084 C T TMEM255B Missense_Mutation p.S68F 0.34 deleterious(0.02) probably_damaging(0.973) TCGA-W3-AA1V-06 13 19748171 19748171 G A TUBA3C Silent p.F395F 0.29 TCGA-W3-AA1V-06 13 19751395 19751395 C T TUBA3C Missense_Mutation p.R243Q 0.35 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-W3-AA1V-06 13 20010446 20010446 C T TPTE2 Missense_Mutation p.E346K 0.37 deleterious(0.01) benign(0.361) TCGA-W3-AA1V-06 13 20244417 20244417 G C MPHOSPH8 Missense_Mutation p.G791R 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 13 20245382 20245382 G A MPHOSPH8 Missense_Mutation p.G832S 0.11 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 13 20797523 20797523 C T GJB6 Missense_Mutation p.V33I 0.32 tolerated(0.53) benign(0.051) TCGA-W3-AA1V-06 13 23898581 23898581 G A SGCG Silent p.Q259Q 0.46 TCGA-W3-AA1V-06 13 23908832 23908832 G A SACS Silent p.L3061L 0.37 TCGA-W3-AA1V-06 13 24465621 24465621 C T C1QTNF9B Missense_Mutation p.G270E 0.32 deleterious(0.05) probably_damaging(0.99) TCGA-W3-AA1V-06 13 24825996 24825996 C T SPATA13 Silent p.S720S 0.35 TCGA-W3-AA1V-06 13 25283924 25283924 G A ATP12A Silent p.K913K 0.35 TCGA-W3-AA1V-06 13 25356041 25356041 G A RNF17 Silent p.V190V 0.48 TCGA-W3-AA1V-06 13 25378537 25378537 A G RNF17 Missense_Mutation p.I687M 0.29 deleterious(0) probably_damaging(0.98) TCGA-W3-AA1V-06 13 25672305 25672305 G A PABPC3 3'UTR 0.16 TCGA-W3-AA1V-06 13 25744396 25744396 C T AMER2 Silent p.Q454Q 0.44 TCGA-W3-AA1V-06 13 27250833 27250833 T C WASF3 Missense_Mutation p.S230P 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-W3-AA1V-06 13 27256873 27256873 C T WASF3 Silent p.F371F 0.35 TCGA-W3-AA1V-06 13 27333801 27333801 C T GPR12 Missense_Mutation p.G55E 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 13 28562776 28562776 C T URAD 5'UTR 0.43 TCGA-W3-AA1V-06 13 29012419 29012419 C T FLT1 Missense_Mutation p.G151E 0.49 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 13 29012420 29012420 C T FLT1 Missense_Mutation p.G151R 0.47 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1V-06 13 29041745 29041745 G A FLT1 Missense_Mutation p.S25L 0.25 deleterious(0.04) probably_damaging(0.977) TCGA-W3-AA1V-06 13 29286936 29286936 C T SLC46A3 Missense_Mutation p.G314E 0.29 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 13 29598784 29598784 C T MTUS2 5'UTR 0.16 TCGA-W3-AA1V-06 13 29599709 29599709 G A MTUS2 Missense_Mutation p.E302K 0.47 deleterious(0.01) benign(0.124) TCGA-W3-AA1V-06 13 32366814 32366814 G A RXFP2 Splice_Site p.X459_splice 0.25 TCGA-W3-AA1V-06 13 32367196 32367196 G A RXFP2 Missense_Mutation p.S586N 0.22 deleterious(0.04) benign(0.17) TCGA-W3-AA1V-06 13 32376405 32376405 C T RXFP2 Nonsense_Mutation p.Q710* 0.38 TCGA-W3-AA1V-06 13 32527548 32527548 A G EEF1DP3 RNA 0.25 TCGA-W3-AA1V-06 13 32798446 32798446 C T FRY Missense_Mutation p.P1614S 0.24 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 13 32812091 32812091 A G FRY Missense_Mutation p.K2129R 0.32 tolerated(1) benign(0.007) TCGA-W3-AA1V-06 13 33628216 33628216 C T KL Nonsense_Mutation p.Q378* 0.34 TCGA-W3-AA1V-06 13 34410473 34410473 A G RFC3 3'UTR 0.33 TCGA-W3-AA1V-06 13 36129223 36129223 C T NBEA Silent p.F2302F 0.30 TCGA-W3-AA1V-06 13 37016859 37016859 C T CCNA1 3'UTR 0.23 TCGA-W3-AA1V-06 13 37678851 37678851 G A CSNK1A1L Silent p.L181L 0.30 TCGA-W3-AA1V-06 13 38151905 38151905 G A POSTN Missense_Mutation p.P665S 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 13 38211225 38211225 C T TRPC4 Missense_Mutation p.D922N 0.51 tolerated_low_confidence(0.05) benign(0.003) TCGA-W3-AA1V-06 13 38211379 38211379 G A TRPC4 Silent p.F870F 0.41 TCGA-W3-AA1V-06 13 38320355 38320355 G A TRPC4 Missense_Mutation p.P206S 0.35 tolerated(0.13) possibly_damaging(0.787) TCGA-W3-AA1V-06 13 39358694 39358694 G A FREM2 Missense_Mutation p.G1923E 0.39 deleterious(0.04) probably_damaging(0.921) TCGA-W3-AA1V-06 13 39588295 39588295 A T PROSER1 Missense_Mutation p.L365Q 0.23 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-W3-AA1V-06 13 40175087 40175087 G A LHFP Silent p.T89T 0.46 TCGA-W3-AA1V-06 13 40175088 40175088 G A LHFP Missense_Mutation p.T89I 0.47 tolerated(0.54) probably_damaging(0.998) TCGA-W3-AA1V-06 13 41331035 41331035 C T MRPS31 Silent p.Q238Q 0.33 TCGA-W3-AA1V-06 13 41834698 41834698 G A MTRF1 Missense_Mutation p.L116F 0.35 tolerated(0.05) benign(0.06) TCGA-W3-AA1V-06 13 41946348 41946348 C T NAA16 Missense_Mutation p.P653S 0.38 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 13 43987005 43987005 C T ENOX1 Missense_Mutation p.E16K 0.31 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1V-06 13 43987046 43987046 A T ENOX1 Missense_Mutation p.V2E 0.35 deleterious_low_confidence(0) benign(0.403) TCGA-W3-AA1V-06 13 46358097 46358097 G A SIAH3 Silent p.H77H 0.47 TCGA-W3-AA1V-06 13 47011946 47011946 C T PPP1R2P4 RNA 0.24 TCGA-W3-AA1V-06 13 52440114 52440114 G A CCDC70 Missense_Mutation p.M200I 0.30 tolerated(0.19) benign(0.001) TCGA-W3-AA1V-06 13 52548293 52548293 G A ATP7B Nonsense_Mutation p.Q355* 0.30 TCGA-W3-AA1V-06 13 52663394 52663394 C T NEK5 Missense_Mutation p.E422K 0.23 deleterious(0) possibly_damaging(0.887) TCGA-W3-AA1V-06 13 52684525 52684525 C T NEK5 Missense_Mutation p.G140R 0.33 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 13 52952584 52952584 C T THSD1 Silent p.E507E 0.31 TCGA-W3-AA1V-06 13 53282730 53282730 C A LECT1 Nonsense_Mutation p.E244* 0.33 TCGA-W3-AA1V-06 13 53422574 53422574 C T PCDH8 5'UTR 0.46 TCGA-W3-AA1V-06 13 58208751 58208751 G A PCDH17 Missense_Mutation p.G691R 0.36 tolerated(0.47) possibly_damaging(0.791) TCGA-W3-AA1V-06 13 58298910 58298910 G A PCDH17 Missense_Mutation p.E988K 0.54 deleterious(0.04) possibly_damaging(0.664) TCGA-W3-AA1V-06 13 70413241 70413241 T A KLHL1 Missense_Mutation p.Q427H 0.34 tolerated(0.06) benign(0.334) TCGA-W3-AA1V-06 13 72014756 72014756 C T DACH1 3'UTR 0.27 TCGA-W3-AA1V-06 13 74387410 74387410 G A KLF12 Nonsense_Mutation p.R229* 0.34 TCGA-W3-AA1V-06 13 76397715 76397715 G A LMO7 Nonsense_Mutation p.W652* 0.34 TCGA-W3-AA1V-06 13 77669544 77669544 G T MYCBP2 Missense_Mutation p.S3345Y 0.27 probably_damaging(0.992) TCGA-W3-AA1V-06 13 77692542 77692542 G A MYCBP2 Intron 0.38 TCGA-W3-AA1V-06 13 84455522 84455522 C T SLITRK1 Missense_Mutation p.D41N 0.23 tolerated(1) benign(0.014) TCGA-W3-AA1V-06 13 86369351 86369351 G A SLITRK6 Silent p.F431F 0.39 TCGA-W3-AA1V-06 13 88328875 88328875 C T SLITRK5 Missense_Mutation p.P411L 0.14 deleterious(0) possibly_damaging(0.876) TCGA-W3-AA1V-06 13 95230285 95230285 G A TGDS Nonsense_Mutation p.Q267* 0.19 TCGA-W3-AA1V-06 13 95230286 95230286 G A TGDS Silent p.V266V 0.19 TCGA-W3-AA1V-06 13 95858899 95858899 G A ABCC4 Missense_Mutation p.R350C 0.26 tolerated(0.08) possibly_damaging(0.832) TCGA-W3-AA1V-06 13 96212675 96212675 A T CLDN10 Missense_Mutation p.K141I 0.45 deleterious(0) possibly_damaging(0.866) TCGA-W3-AA1V-06 13 96238340 96238340 G A DZIP1 Missense_Mutation p.R757C 0.30 deleterious(0) possibly_damaging(0.517) TCGA-W3-AA1V-06 13 96508453 96508453 G A UGGT2 Missense_Mutation p.P1323S 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 13 97639219 97639219 G A OXGR1 Silent p.I265I 0.27 TCGA-W3-AA1V-06 13 97999159 97999159 C T MBNL2 Silent p.T214T 0.18 TCGA-W3-AA1V-06 13 99092273 99092273 G A FARP1 Missense_Mutation p.R831Q 0.24 tolerated(1) benign(0.015) TCGA-W3-AA1V-06 13 99364794 99364794 G A SLC15A1 Silent p.P256P 0.31 TCGA-W3-AA1V-06 14 100182483 100182483 G A CYP46A1 Missense_Mutation p.G285E 0.40 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 14 100360971 100360971 G A EML1 Missense_Mutation p.G204S 0.57 tolerated(0.09) benign(0.359) TCGA-W3-AA1V-06 14 100615479 100615479 G A DEGS2 Silent p.F217F 0.36 TCGA-W3-AA1V-06 14 100934380 100934380 G A WDR25 Missense_Mutation p.G282E 0.30 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1V-06 14 101005280 101005280 C T BEGAIN Missense_Mutation p.E270K 0.33 deleterious(0.02) possibly_damaging(0.775) TCGA-W3-AA1V-06 14 101200853 101200853 C T DLK1 Silent p.L258L 0.39 TCGA-W3-AA1V-06 14 101405949 101405949 C G SNORD113-6 RNA 0.37 TCGA-W3-AA1V-06 14 101439986 101439986 G A SNORD114-16 RNA 0.38 TCGA-W3-AA1V-06 14 101526940 101526940 C T MIR496 RNA 0.24 TCGA-W3-AA1V-06 14 101530838 101530838 G A MIR541 RNA 0.26 TCGA-W3-AA1V-06 14 102028171 102028171 C T DIO3 Missense_Mutation p.S113L 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1V-06 14 102430992 102430992 C T DYNC1H1 5'UTR 0.30 TCGA-W3-AA1V-06 14 102695650 102695650 G A MOK Silent p.T412T 0.36 TCGA-W3-AA1V-06 14 102695651 102695651 G A MOK Missense_Mutation p.T412I 0.38 tolerated(0.06) benign(0.288) TCGA-W3-AA1V-06 14 103574783 103574783 C T EXOC3L4 Silent p.I635I 0.34 TCGA-W3-AA1V-06 14 104027070 104027070 G T BAG5 Silent p.S185S 0.36 TCGA-W3-AA1V-06 14 104471693 104471693 C A TDRD9 Missense_Mutation p.S555Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 14 104641882 104641882 C T KIF26A Silent p.V919V 0.47 TCGA-W3-AA1V-06 14 104642837 104642837 C T KIF26A Silent p.L1238L 0.42 TCGA-W3-AA1V-06 14 105169699 105169699 C T INF2 Missense_Mutation p.P192L 0.32 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 14 105180906 105180906 C T INF2 Missense_Mutation p.S1136F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 14 105207250 105207250 G A ADSSL1 Missense_Mutation p.R263K 0.39 tolerated(0.53) benign(0.002) TCGA-W3-AA1V-06 14 105349705 105349705 C T CEP170B Missense_Mutation p.P304L 0.23 deleterious(0) benign(0.382) TCGA-W3-AA1V-06 14 105409130 105409130 G A AHNAK2 Nonsense_Mutation p.Q4220* 0.41 TCGA-W3-AA1V-06 14 105411343 105411343 G A AHNAK2 Missense_Mutation p.S3482F 0.35 possibly_damaging(0.683) TCGA-W3-AA1V-06 14 105414597 105414597 G A AHNAK2 Silent p.L2397L 0.37 TCGA-W3-AA1V-06 14 105419321 105419321 C T AHNAK2 Missense_Mutation p.D823N 0.33 possibly_damaging(0.569) TCGA-W3-AA1V-06 14 105422983 105422983 G A AHNAK2 Missense_Mutation p.S86F 0.45 possibly_damaging(0.861) TCGA-W3-AA1V-06 14 105477746 105477746 G A CDCA4 Missense_Mutation p.P174L 0.31 deleterious(0) benign(0.133) TCGA-W3-AA1V-06 14 105642960 105642960 G A NUDT14 Silent p.L113L 0.42 TCGA-W3-AA1V-06 14 105707626 105707626 G A BRF1 Missense_Mutation p.R224C 0.53 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 106066544 106066544 G A IGHE Silent p.S382S 0.39 TCGA-W3-AA1V-06 14 106067842 106067842 G A IGHE Missense_Mutation p.S75L 0.36 tolerated(0.41) benign(0.155) TCGA-W3-AA1V-06 14 106208017 106208017 C T IGHG1 Silent p.V262V 0.31 TCGA-W3-AA1V-06 14 106208461 106208461 C T IGHG1 Missense_Mutation p.V147M 0.45 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 106208462 106208462 C T IGHG1 Silent p.V146V 0.45 TCGA-W3-AA1V-06 14 106320561 106320561 G A IGHM Missense_Mutation p.H417Y 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 106320685 106320685 C A IGHM Missense_Mutation p.E375D 0.41 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 14 106329438 106329438 C T IGHJ6 Missense_Mutation p.G11S 0.23 benign(0.162) TCGA-W3-AA1V-06 14 106329439 106329439 C T IGHJ6 Nonsense_Mutation p.W10* 0.23 TCGA-W3-AA1V-06 14 106471520 106471520 G A IGHV1-3 Missense_Mutation p.S26F 0.37 deleterious(0) possibly_damaging(0.619) TCGA-W3-AA1V-06 14 106539374 106539374 G A IGHV1-8 Missense_Mutation p.S19F 0.33 deleterious(0.01) benign(0.409) TCGA-W3-AA1V-06 14 106552399 106552399 C T IGHV3-9 Silent p.A80A 0.35 TCGA-W3-AA1V-06 14 106586359 106586359 T A IGHV3-13 Silent p.A42A 0.25 TCGA-W3-AA1V-06 14 106641575 106641575 A G IGHV1-18 Silent p.Y113Y 0.34 TCGA-W3-AA1V-06 14 106780664 106780664 C T IGHV4-28 Nonsense_Mutation p.W67* 0.28 TCGA-W3-AA1V-06 14 106780724 106780724 G A IGHV4-28 Missense_Mutation p.S47F 0.32 deleterious(0.01) possibly_damaging(0.757) TCGA-W3-AA1V-06 14 106967546 106967546 T A IGHV1-46 5'UTR 0.62 TCGA-W3-AA1V-06 14 107013186 107013186 G A IGHV3-49 Silent p.L37L 0.34 TCGA-W3-AA1V-06 14 107095397 107095397 G A IGHV4-61 Missense_Mutation p.P28L 0.45 deleterious(0) possibly_damaging(0.581) TCGA-W3-AA1V-06 14 107114168 107114168 G A IGHV3-64 Silent p.F10F 0.31 TCGA-W3-AA1V-06 14 107170112 107170112 C T IGHV1-69 Missense_Mutation p.R57Q 0.26 tolerated(0.15) benign(0.175) TCGA-W3-AA1V-06 14 107218920 107218920 G A IGHV3-74 Missense_Mutation p.S36F 0.32 deleterious_low_confidence(0.01) benign(0.231) TCGA-W3-AA1V-06 14 20249284 20249284 C T OR4M1 Missense_Mutation p.S268F 0.27 deleterious(0.01) benign(0.048) TCGA-W3-AA1V-06 14 20295739 20295739 C T OR4N2 Silent p.L44L 0.37 TCGA-W3-AA1V-06 14 20444665 20444665 C T OR4K15 Silent p.L330L 0.32 TCGA-W3-AA1V-06 14 20482705 20482705 C T OR4K14 Silent p.L216L 0.37 TCGA-W3-AA1V-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.46 TCGA-W3-AA1V-06 14 20585842 20585842 C T OR4K17 Missense_Mutation p.L93F 0.29 deleterious(0.02) probably_damaging(0.937) TCGA-W3-AA1V-06 14 20586158 20586158 C T OR4K17 Missense_Mutation p.P198L 0.33 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 14 20612820 20612820 G A OR4N5 Silent p.%3D 0.23 TCGA-W3-AA1V-06 14 20822281 20822281 C T PARP2 Missense_Mutation p.S226F 0.28 deleterious(0.03) benign(0.092) TCGA-W3-AA1V-06 14 20859122 20859122 G A TEP1 Missense_Mutation p.A744V 0.31 tolerated(0.58) possibly_damaging(0.788) TCGA-W3-AA1V-06 14 20920522 20920522 G A OSGEP Silent p.T67T 0.35 TCGA-W3-AA1V-06 14 20920523 20920523 G A OSGEP Missense_Mutation p.T67I 0.33 tolerated(0.1) benign(0.022) TCGA-W3-AA1V-06 14 21025123 21025123 G A RNASE9 Missense_Mutation p.P41S 0.27 tolerated(0.34) probably_damaging(0.986) TCGA-W3-AA1V-06 14 21025124 21025124 G A RNASE9 Silent p.F40F 0.26 TCGA-W3-AA1V-06 14 21549981 21549981 C T ARHGEF40 Missense_Mutation p.P985L 0.40 tolerated(0.05) probably_damaging(0.986) TCGA-W3-AA1V-06 14 21561776 21561776 T G ZNF219 5'UTR 0.23 TCGA-W3-AA1V-06 14 21793142 21793142 G A RPGRIP1 Missense_Mutation p.E710K 0.36 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 14 21861384 21861384 C T CHD8 Missense_Mutation p.E2117K 0.29 deleterious(0.01) benign(0.292) TCGA-W3-AA1V-06 14 21945375 21945375 C T TOX4 5'UTR 0.33 TCGA-W3-AA1V-06 14 22090543 22090543 C T TRAV1-1 Missense_Mutation p.S50F 0.35 tolerated(0.71) benign(0.001) TCGA-W3-AA1V-06 14 22090544 22090544 C T TRAV1-1 Silent p.S50S 0.33 TCGA-W3-AA1V-06 14 22102666 22102666 G A OR10G2 Silent p.F111F 0.32 TCGA-W3-AA1V-06 14 22111532 22111532 G A TRAV1-2 Missense_Mutation p.G18R 0.37 deleterious(0) probably_damaging(0.949) TCGA-W3-AA1V-06 14 22192091 22192091 G A TRAV3 5'UTR 0.65 TCGA-W3-AA1V-06 14 22192414 22192414 C T TRAV3 Silent p.L63L 0.36 TCGA-W3-AA1V-06 14 22251625 22251625 G A TRAV7 Missense_Mutation p.G81E 0.22 tolerated(0.24) possibly_damaging(0.892) TCGA-W3-AA1V-06 14 22279890 22279890 G A TRAV9-1 Missense_Mutation p.E27K 0.62 tolerated(0.16) benign(0.175) TCGA-W3-AA1V-06 14 22321117 22321117 C T TRAV8-3 Missense_Mutation p.S92F 0.43 deleterious(0) possibly_damaging(0.477) TCGA-W3-AA1V-06 14 22392724 22392724 C T TRAV14DV4 Missense_Mutation p.R83C 0.17 TCGA-W3-AA1V-06 14 22392758 22392758 C T TRAV14DV4 Missense_Mutation p.S94F 0.18 TCGA-W3-AA1V-06 14 22447173 22447173 C T TRAV8-6 Missense_Mutation p.L52F 0.44 deleterious(0.02) possibly_damaging(0.791) TCGA-W3-AA1V-06 14 22471851 22471851 C T TRAV18 Missense_Mutation p.H92Y 0.69 deleterious(0.03) benign(0.222) TCGA-W3-AA1V-06 14 22539392 22539392 C T TRAV22 Silent p.V84V 0.33 TCGA-W3-AA1V-06 14 22554987 22554987 C T TRAV23DV6 Missense_Mutation p.S38F 0.37 tolerated(0.49) benign(0.119) TCGA-W3-AA1V-06 14 22555189 22555189 C T TRAV23DV6 Silent p.I105I 0.38 TCGA-W3-AA1V-06 14 22580733 22580733 C T TRAV25 Missense_Mutation p.P26S 0.24 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 14 22740420 22740420 G A TRAV38-1 Silent p.A108A 0.28 TCGA-W3-AA1V-06 14 22783132 22783132 G A TRAV40 Missense_Mutation p.G33E 0.41 tolerated(0.32) possibly_damaging(0.498) TCGA-W3-AA1V-06 14 22891824 22891824 G A TRDV2 Missense_Mutation p.G46R 0.32 deleterious(0) probably_damaging(0.946) TCGA-W3-AA1V-06 14 23236009 23236009 C T OXA1L Intron 0.36 TCGA-W3-AA1V-06 14 23282352 23282352 C T SLC7A7 Missense_Mutation p.G86R 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 23415904 23415904 C T HAUS4 Missense_Mutation p.G308R 0.28 deleterious(0.02) benign(0.439) TCGA-W3-AA1V-06 14 23450574 23450574 G A AJUBA Missense_Mutation p.P301L 0.42 tolerated(0.05) benign(0.005) TCGA-W3-AA1V-06 14 23863031 23863031 C T MYH6 Missense_Mutation p.M924I 0.26 tolerated(0.1) benign(0.001) TCGA-W3-AA1V-06 14 23866273 23866273 G A MYH6 Silent p.P689P 0.15 TCGA-W3-AA1V-06 14 23869924 23869924 G A MYH6 Silent p.I468I 0.35 TCGA-W3-AA1V-06 14 23884243 23884243 C T MYH7 Missense_Mutation p.M1840I 0.41 tolerated(0.3) benign(0.007) TCGA-W3-AA1V-06 14 23890212 23890212 T C MYH7 Silent p.E1097E 0.18 TCGA-W3-AA1V-06 14 24113346 24113346 C T DHRS2 Missense_Mutation p.S172F 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 24543359 24543359 C T CPNE6 Intron 0.26 TCGA-W3-AA1V-06 14 24624626 24624626 C T RNF31 Missense_Mutation p.R770C 0.46 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 14 24650921 24650921 G A IPO4 Missense_Mutation p.P979L 0.31 deleterious(0.03) benign(0.317) TCGA-W3-AA1V-06 14 24771588 24771588 C T NOP9 Silent p.F367F 0.26 TCGA-W3-AA1V-06 14 24785467 24785467 A C LTB4R Missense_Mutation p.I204L 0.28 deleterious(0.02) benign(0.143) TCGA-W3-AA1V-06 14 24839694 24839694 C T NFATC4 Missense_Mutation p.P427S 0.19 tolerated(0.36) benign(0.012) TCGA-W3-AA1V-06 14 24884643 24884643 C T NYNRIN Silent p.L1230L 0.44 TCGA-W3-AA1V-06 14 24884858 24884858 C T NYNRIN Silent p.F1301F 0.32 TCGA-W3-AA1V-06 14 24974771 24974771 C T CMA1 Missense_Mutation p.R232Q 0.35 tolerated(0.05) probably_damaging(0.975) TCGA-W3-AA1V-06 14 24975483 24975483 C T CMA1 Silent p.K117K 0.17 TCGA-W3-AA1V-06 14 24976710 24976710 C T CMA1 Missense_Mutation p.E21K 0.37 tolerated(0.25) benign(0.077) TCGA-W3-AA1V-06 14 25326240 25326240 G A STXBP6 Missense_Mutation p.P93L 0.31 deleterious(0.01) benign(0.007) TCGA-W3-AA1V-06 14 26941594 26941594 A T NOVA1 Missense_Mutation p.L151M 0.25 tolerated(0.12) unknown(0) TCGA-W3-AA1V-06 14 31349668 31349668 A G COCH Silent p.L149L 0.32 TCGA-W3-AA1V-06 14 31355405 31355405 G A COCH Missense_Mutation p.R455K 0.39 tolerated(0.17) benign(0.07) TCGA-W3-AA1V-06 14 31554070 31554070 C T AP4S1 Silent p.S154S 0.30 TCGA-W3-AA1V-06 14 31592176 31592176 C T HECTD1 Missense_Mutation p.E1687K 0.33 deleterious(0.04) benign(0.003) TCGA-W3-AA1V-06 14 31765120 31765120 G A RP11-596D21.1 Intron 0.38 TCGA-W3-AA1V-06 14 32562058 32562058 C T ARHGAP5 Missense_Mutation p.P728L 0.33 tolerated(0.71) benign(0.028) TCGA-W3-AA1V-06 14 33292145 33292145 A G AKAP6 Missense_Mutation p.N1709S 0.38 deleterious(0.02) benign(0.027) TCGA-W3-AA1V-06 14 34145419 34145419 G A NPAS3 Silent p.V187V 0.38 TCGA-W3-AA1V-06 14 34269592 34269592 C T NPAS3 Silent p.S693S 0.33 TCGA-W3-AA1V-06 14 35483028 35483028 C T SRP54 Missense_Mutation p.P269L 0.37 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 14 36840835 36840835 G A DPPA3P2 RNA 0.37 TCGA-W3-AA1V-06 14 38679636 38679636 G A SSTR1 Missense_Mutation p.E348K 0.28 deleterious(0.04) possibly_damaging(0.899) TCGA-W3-AA1V-06 14 39502391 39502391 G A SEC23A 3'UTR 0.30 TCGA-W3-AA1V-06 14 42360662 42360662 T A LRFN5 Missense_Mutation p.I532N 0.30 deleterious(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 14 44974666 44974666 G A FSCB Nonsense_Mutation p.Q509* 0.37 TCGA-W3-AA1V-06 14 47120221 47120221 T C RPL10L 3'Flank 0.73 TCGA-W3-AA1V-06 14 47120811 47120811 C T RPL10L Silent p.V43V 0.32 TCGA-W3-AA1V-06 14 50074438 50074438 C T LRR1 Silent p.H201H 0.47 TCGA-W3-AA1V-06 14 50133096 50133096 G A POLE2 Silent p.T176T 0.26 TCGA-W3-AA1V-06 14 50133097 50133097 G A POLE2 Missense_Mutation p.T176I 0.28 deleterious(0) benign(0.024) TCGA-W3-AA1V-06 14 50272837 50272837 G A NEMF Missense_Mutation p.P587S 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 50750673 50750673 G A L2HGDH Nonsense_Mutation p.Q207* 0.25 TCGA-W3-AA1V-06 14 51058342 51058342 G A ATL1 Missense_Mutation p.M169I 0.34 deleterious(0.02) possibly_damaging(0.573) TCGA-W3-AA1V-06 14 51131972 51131972 C T SAV1 Missense_Mutation p.E154K 0.39 tolerated(0.06) benign(0.006) TCGA-W3-AA1V-06 14 51224438 51224438 T C NIN Missense_Mutation p.M1104V 0.40 tolerated_low_confidence(0.21) benign(0.011) TCGA-W3-AA1V-06 14 51288706 51288706 C T NIN Silent p.T23T 0.36 TCGA-W3-AA1V-06 14 51716445 51716445 C T TMX1 Missense_Mutation p.S209L 0.47 deleterious(0.01) possibly_damaging(0.546) TCGA-W3-AA1V-06 14 52171466 52171466 G C FRMD6 Splice_Site p.X124_splice 0.29 TCGA-W3-AA1V-06 14 52507530 52507530 G T NID2 Missense_Mutation p.P622Q 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 52535520 52535520 G A NID2 Silent p.L65L 0.24 TCGA-W3-AA1V-06 14 52535521 52535521 G A NID2 Silent p.P64P 0.23 TCGA-W3-AA1V-06 14 53558633 53558633 T G DDHD1 Silent p.R387R 0.29 TCGA-W3-AA1V-06 14 54868260 54868260 G A CDKN3 Silent p.V37V 0.33 TCGA-W3-AA1V-06 14 55411173 55411173 G A WDHD1 Silent p.F1022F 0.44 TCGA-W3-AA1V-06 14 55531431 55531431 A G MAPK1IP1L 3'UTR 0.58 TCGA-W3-AA1V-06 14 55636227 55636227 C T DLGAP5 Missense_Mutation p.E480K 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 58060806 58060806 C T SLC35F4 Missense_Mutation p.G83E 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-W3-AA1V-06 14 58063592 58063592 G A SLC35F4 Silent p.L8L 0.33 TCGA-W3-AA1V-06 14 59105232 59105232 G A DACT1 Silent p.L104L 0.25 TCGA-W3-AA1V-06 14 59105233 59105233 G C DACT1 Missense_Mutation p.E105Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 14 60212916 60212916 G A RTN1 Silent p.S175S 0.33 TCGA-W3-AA1V-06 14 61180758 61180758 G A SIX4 Silent p.G571G 0.27 TCGA-W3-AA1V-06 14 63174378 63174378 A T KCNH5 Missense_Mutation p.L939I 0.34 tolerated_low_confidence(0.1) benign(0.019) TCGA-W3-AA1V-06 14 63174493 63174493 G A KCNH5 Silent p.P900P 0.27 TCGA-W3-AA1V-06 14 63175081 63175081 G A KCNH5 Silent p.H704H 0.38 TCGA-W3-AA1V-06 14 63269215 63269215 G A KCNH5 Nonsense_Mutation p.R552* 0.41 TCGA-W3-AA1V-06 14 63316567 63316567 A C KCNH5 Missense_Mutation p.L458R 0.38 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 14 63416801 63416801 G A KCNH5 Intron 0.32 TCGA-W3-AA1V-06 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.33 TCGA-W3-AA1V-06 14 63473115 63473115 G A KCNH5 Silent p.N91N 0.27 TCGA-W3-AA1V-06 14 64727463 64727463 G A ESR2 Missense_Mutation p.S219F 0.25 tolerated(0.14) benign(0.304) TCGA-W3-AA1V-06 14 64911432 64911432 C T MTHFD1 Missense_Mutation p.P720S 0.31 tolerated(0.13) benign(0.426) TCGA-W3-AA1V-06 14 65008981 65008981 C T HSPA2 Missense_Mutation p.R472C 0.54 deleterious_low_confidence(0) benign(0.076) TCGA-W3-AA1V-06 14 65250970 65250970 C T SPTB Missense_Mutation p.D1333N 0.19 tolerated(0.09) possibly_damaging(0.875) TCGA-W3-AA1V-06 14 65253489 65253489 G A SPTB Missense_Mutation p.A1065V 0.36 deleterious(0.05) benign(0.017) TCGA-W3-AA1V-06 14 67671536 67671536 C T FAM71D Silent p.I214I 0.28 TCGA-W3-AA1V-06 14 68151851 68151851 G A RDH11 Silent p.F245F 0.28 TCGA-W3-AA1V-06 14 68244899 68244899 G A ZFYVE26 Missense_Mutation p.H1581Y 0.32 deleterious(0.01) benign(0.341) TCGA-W3-AA1V-06 14 69369212 69369212 G A ACTN1 Silent p.A248A 0.28 TCGA-W3-AA1V-06 14 70490025 70490025 G A SMOC1 Missense_Mutation p.M384I 0.42 tolerated(1) benign(0.067) TCGA-W3-AA1V-06 14 70527583 70527583 C T SLC8A3 Missense_Mutation p.E620K 0.43 tolerated(0.06) benign(0.09) TCGA-W3-AA1V-06 14 70633439 70633439 C T SLC8A3 Silent p.R567R 0.38 TCGA-W3-AA1V-06 14 70712682 70712682 C T ADAM21P1 RNA 0.31 TCGA-W3-AA1V-06 14 70712830 70712830 C T ADAM21P1 RNA 0.38 TCGA-W3-AA1V-06 14 70839581 70839581 G A SYNJ2BP 3'UTR 0.29 TCGA-W3-AA1V-06 14 70925810 70925810 G A ADAM21 Missense_Mutation p.E532K 0.31 tolerated(0.13) benign(0.097) TCGA-W3-AA1V-06 14 70926359 70926359 G A ADAM21 Missense_Mutation p.E715K 0.27 tolerated(0.24) benign(0) TCGA-W3-AA1V-06 14 70990745 70990745 A T ADAM20 Missense_Mutation p.F294I 0.30 tolerated(1) benign(0.006) TCGA-W3-AA1V-06 14 70990761 70990761 G A ADAM20 Silent p.V288V 0.37 TCGA-W3-AA1V-06 14 71064476 71064476 G A MED6 Missense_Mutation p.S14F 0.24 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 14 71134435 71134435 G A TTC9 Silent p.L187L 0.32 TCGA-W3-AA1V-06 14 71444535 71444535 C T PCNX Missense_Mutation p.P494L 0.27 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-W3-AA1V-06 14 71479863 71479863 C T PCNX Silent p.P980P 0.23 TCGA-W3-AA1V-06 14 71543017 71543017 C T PCNX Missense_Mutation p.P1740S 0.36 deleterious(0) possibly_damaging(0.507) TCGA-W3-AA1V-06 14 72152143 72152143 G A SIPA1L1 Missense_Mutation p.E1057K 0.32 deleterious(0.02) benign(0.207) TCGA-W3-AA1V-06 14 72921284 72921284 C T RGS6 Missense_Mutation p.P78L 0.35 tolerated(0.51) benign(0.008) TCGA-W3-AA1V-06 14 73578358 73578358 C T RBM25 Missense_Mutation p.P714S 0.39 possibly_damaging(0.641) TCGA-W3-AA1V-06 14 73733328 73733328 G A PAPLN Missense_Mutation p.R1101K 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-W3-AA1V-06 14 73958823 73958823 G A HEATR4 Intron 0.34 TCGA-W3-AA1V-06 14 74060559 74060559 C T ACOT4 Missense_Mutation p.S204F 0.49 deleterious(0.02) benign(0.003) TCGA-W3-AA1V-06 14 74205782 74205782 G A ELMSAN1 Silent p.P310P 0.35 TCGA-W3-AA1V-06 14 74500851 74500851 C T CCDC176 Nonsense_Mutation p.Q158* 0.24 TCGA-W3-AA1V-06 14 74753082 74753082 G A ABCD4 3'UTR 0.37 TCGA-W3-AA1V-06 14 74756193 74756193 G A ABCD4 Silent p.P483P 0.44 TCGA-W3-AA1V-06 14 74756194 74756194 G A ABCD4 Missense_Mutation p.P483L 0.44 deleterious(0) benign(0.026) TCGA-W3-AA1V-06 14 74825205 74825205 G A VRTN Silent p.E573E 0.34 TCGA-W3-AA1V-06 14 74969971 74969971 G A LTBP2 Silent p.D1613D 0.16 TCGA-W3-AA1V-06 14 75150020 75150020 A T AREL1 Missense_Mutation p.Y154N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 14 75264838 75264838 C T YLPM1 Silent p.P946P 0.31 TCGA-W3-AA1V-06 14 75266261 75266261 C T YLPM1 Missense_Mutation p.P1421S 0.33 benign(0.05) TCGA-W3-AA1V-06 14 75276454 75276454 C T YLPM1 Silent p.S1631S 0.29 TCGA-W3-AA1V-06 14 75378036 75378036 G A RPS6KL1 Silent p.I193I 0.34 TCGA-W3-AA1V-06 14 75580990 75580990 G A NEK9 Silent p.I263I 0.21 TCGA-W3-AA1V-06 14 75746585 75746585 C T FOS Silent p.F49F 0.32 TCGA-W3-AA1V-06 14 75991472 75991472 C T BATF Missense_Mutation p.R37C 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 76964613 76964613 G A ESRRB Missense_Mutation p.E372K 0.33 tolerated(0.08) benign(0.347) TCGA-W3-AA1V-06 14 77270232 77270232 G A ANGEL1 Silent p.S468S 0.31 TCGA-W3-AA1V-06 14 77809746 77809746 T C TMED8 Missense_Mutation p.K179E 0.38 tolerated(0.16) probably_damaging(0.997) TCGA-W3-AA1V-06 14 77910659 77910659 G A VIPAS39 Missense_Mutation p.S177F 0.53 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 14 77929086 77929088 CAG - AHSA1 In_Frame_Del p.S153del 0.28 TCGA-W3-AA1V-06 14 77948827 77948827 C T ISM2 Missense_Mutation p.E271K 0.37 deleterious(0.05) possibly_damaging(0.636) TCGA-W3-AA1V-06 14 78142103 78142103 G A ALKBH1 Silent p.F212F 0.17 TCGA-W3-AA1V-06 14 78146240 78146240 A G ALKBH1 Missense_Mutation p.Y177H 0.38 tolerated(0.24) probably_damaging(0.996) TCGA-W3-AA1V-06 14 79111585 79111585 G A NRXN3 5'UTR 0.50 TCGA-W3-AA1V-06 14 79175597 79175597 C T NRXN3 Missense_Mutation p.S47F 0.39 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 14 79181152 79181152 G A NRXN3 Missense_Mutation p.E199K 0.36 tolerated(0.1) possibly_damaging(0.878) TCGA-W3-AA1V-06 14 79181380 79181380 G A NRXN3 Missense_Mutation p.D275N 0.53 tolerated(0.49) probably_damaging(0.989) TCGA-W3-AA1V-06 14 86089079 86089079 G A FLRT2 Silent p.T407T 0.22 TCGA-W3-AA1V-06 14 86089129 86089129 G A FLRT2 Missense_Mutation p.R424Q 0.25 tolerated(0.6) benign(0.009) TCGA-W3-AA1V-06 14 86089280 86089280 G A FLRT2 Silent p.E474E 0.44 TCGA-W3-AA1V-06 14 88477470 88477470 C T GPR65 Silent p.L93L 0.34 TCGA-W3-AA1V-06 14 88652178 88652178 C T KCNK10 Missense_Mutation p.E445K 0.25 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1V-06 14 88652406 88652406 C T KCNK10 Missense_Mutation p.D369N 0.33 deleterious(0.04) possibly_damaging(0.691) TCGA-W3-AA1V-06 14 88789107 88789107 C T KCNK10 Silent p.V12V 0.29 TCGA-W3-AA1V-06 14 89171885 89171885 C T EML5 Missense_Mutation p.D625N 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-W3-AA1V-06 14 89202778 89202778 C T EML5 Missense_Mutation p.E327K 0.31 deleterious(0.01) probably_damaging(0.925) TCGA-W3-AA1V-06 14 89206879 89206879 C T EML5 Missense_Mutation p.R188Q 0.32 deleterious(0.01) possibly_damaging(0.884) TCGA-W3-AA1V-06 14 90651046 90651046 C T KCNK13 Missense_Mutation p.S309L 0.26 tolerated(0.44) benign(0.002) TCGA-W3-AA1V-06 14 90651053 90651053 G A KCNK13 Silent p.R311R 0.25 TCGA-W3-AA1V-06 14 90651308 90651308 C T KCNK13 Silent p.I396I 0.28 TCGA-W3-AA1V-06 14 90871085 90871085 C T CALM1 3'UTR 0.16 TCGA-W3-AA1V-06 14 91110490 91110490 G A TTC7B Silent p.S551S 0.35 TCGA-W3-AA1V-06 14 91196450 91196450 G A TTC7B Nonsense_Mutation p.Q223* 0.30 TCGA-W3-AA1V-06 14 91633605 91633605 C T C14orf159 Missense_Mutation p.S47F 0.33 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1V-06 14 91647647 91647647 C T C14orf159 Missense_Mutation p.S283F 0.57 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 14 91671070 91671070 G A C14orf159 Missense_Mutation p.E489K 0.35 tolerated(0.06) possibly_damaging(0.46) TCGA-W3-AA1V-06 14 91760578 91760578 T C CCDC88C Missense_Mutation p.M1351V 0.39 deleterious(0.03) benign(0.103) TCGA-W3-AA1V-06 14 91780306 91780306 C T CCDC88C Silent p.R618R 0.22 TCGA-W3-AA1V-06 14 91937216 91937216 A G SMEK1 Missense_Mutation p.V529A 0.38 deleterious(0.05) probably_damaging(0.932) TCGA-W3-AA1V-06 14 92087996 92087996 C T CATSPERB Missense_Mutation p.G739E 0.31 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 14 92189451 92189451 G A CATSPERB Missense_Mutation p.P84L 0.24 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 14 92189452 92189452 G A CATSPERB Missense_Mutation p.P84S 0.24 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 14 92251698 92251698 G A TC2N Silent p.F390F 0.35 TCGA-W3-AA1V-06 14 92278795 92278795 C T TC2N Silent p.Q54Q 0.36 TCGA-W3-AA1V-06 14 92470751 92470751 G A TRIP11 Missense_Mutation p.S1190F 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 92471337 92471337 G A TRIP11 Nonsense_Mutation p.Q995* 0.22 TCGA-W3-AA1V-06 14 93022107 93022107 T A RIN3 Missense_Mutation p.V19D 0.25 tolerated(0.59) unknown(0) TCGA-W3-AA1V-06 14 94044359 94044359 G A UNC79 Missense_Mutation p.E618K 0.32 tolerated(0.06) benign(0.036) TCGA-W3-AA1V-06 14 94088212 94088212 C T UNC79 Missense_Mutation p.P1368S 0.32 tolerated_low_confidence(0.43) benign(0.015) TCGA-W3-AA1V-06 14 94103624 94103624 G A UNC79 Missense_Mutation p.G1789R 0.29 tolerated_low_confidence(0.05) benign(0.144) TCGA-W3-AA1V-06 14 94582856 94582856 T C IFI27 Missense_Mutation p.F118L 0.41 tolerated_low_confidence(0.13) benign(0.153) TCGA-W3-AA1V-06 14 94780446 94780446 C T SERPINA6 Silent p.G180G 0.34 TCGA-W3-AA1V-06 14 94849003 94849003 C T SERPINA1 Missense_Mutation p.G191E 0.36 deleterious(0.04) probably_damaging(0.935) TCGA-W3-AA1V-06 14 94962709 94962709 C T SERPINA12 Splice_Site p.X302_splice 0.31 TCGA-W3-AA1V-06 14 94962710 94962710 C T SERPINA12 Missense_Mutation p.R302K 0.30 deleterious(0.04) benign(0.41) TCGA-W3-AA1V-06 14 95577707 95577707 T C DICER1 Missense_Mutation p.S735G 0.33 tolerated(0.11) benign(0.005) TCGA-W3-AA1V-06 14 96178668 96178668 C T TCL1A Missense_Mutation p.M62I 0.37 tolerated(0.24) benign(0.119) TCGA-W3-AA1V-06 14 96707173 96707173 G A BDKRB2 Missense_Mutation p.G170S 0.25 tolerated(0.18) possibly_damaging(0.542) TCGA-W3-AA1V-06 14 96707174 96707174 G A BDKRB2 Missense_Mutation p.G170D 0.25 tolerated(0.06) possibly_damaging(0.832) TCGA-W3-AA1V-06 14 96731048 96731048 G A BDKRB1 Silent p.R343R 0.28 TCGA-W3-AA1V-06 14 96953303 96953303 A C AK7 Missense_Mutation p.R681S 0.31 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 14 99640494 99640494 C T BCL11B Silent p.R893R 0.45 TCGA-W3-AA1V-06 14 99641885 99641885 C T BCL11B Missense_Mutation p.E430K 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 14 99879200 99879200 G A SETD3 Intron 0.75 TCGA-W3-AA1V-06 15 100269237 100269237 A T LYSMD4 3'UTR 0.31 TCGA-W3-AA1V-06 15 101529639 101529639 C T LRRK1 Intron 0.33 TCGA-W3-AA1V-06 15 101550683 101550683 A T LRRK1 Nonsense_Mutation p.K340* 0.25 TCGA-W3-AA1V-06 15 102462487 102462487 G A OR4F4 Missense_Mutation p.S259L 0.30 tolerated(0.67) benign(0.008) TCGA-W3-AA1V-06 15 20169990 20169990 G A IGHV1OR15-9 Silent p.S94S 0.38 TCGA-W3-AA1V-06 15 20488853 20488853 G A CHEK2P2 RNA 0.08 TCGA-W3-AA1V-06 15 20643858 20643858 T G HERC2P3 RNA 0.18 TCGA-W3-AA1V-06 15 20666466 20666466 G A HERC2P3 RNA 0.15 TCGA-W3-AA1V-06 15 22369472 22369472 C T OR4M2 Silent p.A299A 0.18 TCGA-W3-AA1V-06 15 22383295 22383295 C T OR4N4 Missense_Mutation p.H275Y 0.14 tolerated(1) probably_damaging(0.944) TCGA-W3-AA1V-06 15 23931912 23931912 G A NDN Silent p.F151F 0.38 TCGA-W3-AA1V-06 15 23932116 23932116 C T NDN Silent p.P83P 0.55 TCGA-W3-AA1V-06 15 24922164 24922164 G A NPAP1 Missense_Mutation p.D384N 0.37 tolerated(0.22) benign(0.206) TCGA-W3-AA1V-06 15 25223396 25223396 C T SNRPN Missense_Mutation p.P206S 0.26 deleterious(0.03) unknown(0) TCGA-W3-AA1V-06 15 25225104 25225104 T C SNRPN 3'Flank 0.33 TCGA-W3-AA1V-06 15 25232105 25232105 G A SNORD108 RNA 0.27 TCGA-W3-AA1V-06 15 25320990 25320990 C T SNORD116-9 3'Flank 0.56 TCGA-W3-AA1V-06 15 25330566 25330566 G A SNORD116-18 RNA 0.34 TCGA-W3-AA1V-06 15 25349817 25349817 C T SNHG14 RNA 0.47 TCGA-W3-AA1V-06 15 25423889 25423889 C T SNORD115-5 RNA 0.36 TCGA-W3-AA1V-06 15 25442762 25442762 G A SNORD115-15 RNA 0.31 TCGA-W3-AA1V-06 15 25479210 25479210 G A SNORD115-33 3'Flank 0.36 TCGA-W3-AA1V-06 15 25479442 25479442 A G SNORD115-35 RNA 0.34 TCGA-W3-AA1V-06 15 25488591 25488591 A G SNORD115-40 5'Flank 0.44 TCGA-W3-AA1V-06 15 25969131 25969131 C T ATP10A Silent p.K339K 0.35 TCGA-W3-AA1V-06 15 26793105 26793105 T G GABRB3 Missense_Mutation p.R419S 0.34 tolerated(0.13) benign(0.438) TCGA-W3-AA1V-06 15 26793106 26793106 C T GABRB3 Missense_Mutation p.R419K 0.34 tolerated(0.14) benign(0.022) TCGA-W3-AA1V-06 15 26793111 26793111 C T GABRB3 Silent p.G417G 0.22 TCGA-W3-AA1V-06 15 26793250 26793250 G A GABRB3 Missense_Mutation p.S371L 0.26 tolerated(0.13) benign(0.129) TCGA-W3-AA1V-06 15 26825562 26825562 C A GABRB3 Missense_Mutation p.G196W 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 27160017 27160017 C T GABRA5 Silent p.L189L 0.38 TCGA-W3-AA1V-06 15 28211900 28211900 A T OCA2 Missense_Mutation p.F524L 0.24 deleterious(0.05) benign(0.068) TCGA-W3-AA1V-06 15 28211968 28211968 C T OCA2 Missense_Mutation p.G502S 0.40 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 15 28358337 28358337 G A HERC2 Silent p.F4704F 0.32 TCGA-W3-AA1V-06 15 31319144 31319144 T G TRPM1 Missense_Mutation p.D1174A 0.25 deleterious(0.01) benign(0.184) TCGA-W3-AA1V-06 15 31342650 31342650 C T TRPM1 Missense_Mutation p.E484K 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-W3-AA1V-06 15 33895449 33895449 G A RYR3 Missense_Mutation p.G683D 0.37 probably_damaging(1) TCGA-W3-AA1V-06 15 33916093 33916093 C A RYR3 Missense_Mutation p.P815T 0.33 probably_damaging(0.999) TCGA-W3-AA1V-06 15 34105137 34105137 C T RYR3 Missense_Mutation p.P3444L 0.36 benign(0.241) TCGA-W3-AA1V-06 15 34157384 34157384 C T RYR3 Missense_Mutation p.A4857V 0.22 benign(0.049) TCGA-W3-AA1V-06 15 34355069 34355069 G A CHRM5 Missense_Mutation p.V51I 0.24 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 15 34445233 34445233 G A KATNBL1 Missense_Mutation p.R66C 0.31 tolerated(0.19) benign(0.001) TCGA-W3-AA1V-06 15 34635360 34635360 C T NOP10 5'UTR 0.16 TCGA-W3-AA1V-06 15 34635361 34635361 C T NOP10 5'UTR 0.16 TCGA-W3-AA1V-06 15 34640379 34640379 G A NUTM1 Missense_Mutation p.G76R 0.33 deleterious(0.02) benign(0.182) TCGA-W3-AA1V-06 15 34657381 34657381 G A LPCAT4 Silent p.F102F 0.46 TCGA-W3-AA1V-06 15 34673720 34673720 G A GOLGA8A Silent p.V568V 0.26 TCGA-W3-AA1V-06 15 35044722 35044722 G A GJD2 Missense_Mutation p.P308L 0.47 tolerated(0.13) possibly_damaging(0.758) TCGA-W3-AA1V-06 15 35529659 35529659 G A ANP32AP1 RNA 0.36 TCGA-W3-AA1V-06 15 38643281 38643281 C T SPRED1 Nonsense_Mutation p.R251* 0.30 TCGA-W3-AA1V-06 15 38792318 38792318 C T RASGRP1 Missense_Mutation p.G569E 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 39874061 39874061 G A THBS1 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.107) TCGA-W3-AA1V-06 15 40512937 40512937 C T BUB1B Missense_Mutation p.P1044S 0.40 tolerated(0.35) benign(0.043) TCGA-W3-AA1V-06 15 40581023 40581023 G A PLCB2 Missense_Mutation p.P1151S 0.35 deleterious(0.04) benign(0.052) TCGA-W3-AA1V-06 15 40661288 40661288 C T DISP2 Missense_Mutation p.S992F 0.53 deleterious(0) possibly_damaging(0.681) TCGA-W3-AA1V-06 15 40699896 40699896 C T IVD Silent p.I71I 0.36 TCGA-W3-AA1V-06 15 40846274 40846274 T G C15orf57 Missense_Mutation p.T161P 0.31 deleterious(0.02) probably_damaging(0.917) TCGA-W3-AA1V-06 15 41228540 41228540 G A DLL4 Missense_Mutation p.G452D 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 15 41679781 41679781 A G NDUFAF1 Missense_Mutation p.I282T 0.36 deleterious(0) possibly_damaging(0.864) TCGA-W3-AA1V-06 15 41796269 41796269 C G LTK Silent p.L840L 0.24 TCGA-W3-AA1V-06 15 41819137 41819137 G A RPAP1 Missense_Mutation p.R626C 0.36 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 15 41820115 41820115 C T RPAP1 Silent p.G457G 0.26 TCGA-W3-AA1V-06 15 41820116 41820116 C T RPAP1 Missense_Mutation p.G457E 0.26 deleterious(0.01) possibly_damaging(0.448) TCGA-W3-AA1V-06 15 41989028 41989028 C T MGA Missense_Mutation p.S607F 0.62 tolerated(0.05) benign(0.092) TCGA-W3-AA1V-06 15 42434745 42434745 G A PLA2G4F Silent p.F770F 0.23 TCGA-W3-AA1V-06 15 42512284 42512284 C T TMEM87A Missense_Mutation p.E485K 0.30 deleterious(0.05) probably_damaging(0.983) TCGA-W3-AA1V-06 15 42622800 42622800 A T GANC Silent p.I557I 0.35 TCGA-W3-AA1V-06 15 42678415 42678415 C T CAPN3 Missense_Mutation p.L144F 0.33 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 15 43102877 43102877 G A TTBK2 Missense_Mutation p.P253S 0.27 tolerated(1) benign(0.021) TCGA-W3-AA1V-06 15 43102879 43102879 G A TTBK2 Missense_Mutation p.P252L 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 43668794 43668794 C T TUBGCP4 Missense_Mutation p.R101C 0.40 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 15 43910191 43910191 A G STRC Missense_Mutation p.V143A 0.16 tolerated(0.64) benign(0.004) TCGA-W3-AA1V-06 15 43991252 43991252 C T CKMT1A Missense_Mutation p.R407C 0.37 deleterious(0.01) possibly_damaging(0.448) TCGA-W3-AA1V-06 15 43991290 43991290 C T CKMT1A 3'UTR 0.25 TCGA-W3-AA1V-06 15 44136219 44136219 G A WDR76 Silent p.G333G 0.23 TCGA-W3-AA1V-06 15 44136220 44136220 G A WDR76 Missense_Mutation p.A334T 0.23 tolerated(0.13) benign(0.065) TCGA-W3-AA1V-06 15 45047218 45047218 C A TRIM69 Missense_Mutation p.L43M 0.33 deleterious(0.01) probably_damaging(0.955) TCGA-W3-AA1V-06 15 45047219 45047219 T A TRIM69 Missense_Mutation p.L43Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 15 45386269 45386269 G A DUOX2 3'UTR 0.62 TCGA-W3-AA1V-06 15 45400363 45400363 G A DUOX2 Missense_Mutation p.L486F 0.42 deleterious(0.01) possibly_damaging(0.541) TCGA-W3-AA1V-06 15 45402876 45402876 G A DUOX2 Silent p.F305F 0.30 TCGA-W3-AA1V-06 15 45545693 45545693 G A SLC28A2 Missense_Mutation p.G49R 0.43 tolerated(0.29) benign(0.007) TCGA-W3-AA1V-06 15 45555437 45555437 G A SLC28A2 Silent p.T147T 0.26 TCGA-W3-AA1V-06 15 45654310 45654310 G A GATM Silent p.D423D 0.50 TCGA-W3-AA1V-06 15 48729577 48729577 G A FBN1 Silent p.F2107F 0.38 TCGA-W3-AA1V-06 15 49304936 49304936 G A SECISBP2L Missense_Mutation p.S547F 0.24 deleterious(0) possibly_damaging(0.62) TCGA-W3-AA1V-06 15 49800413 49800413 G A FAM227B Missense_Mutation p.S336L 0.33 tolerated(0.27) benign(0.004) TCGA-W3-AA1V-06 15 50339593 50339593 G A ATP8B4 Silent p.F52F 0.28 TCGA-W3-AA1V-06 15 50550611 50550611 C T HDC Missense_Mutation p.G103E 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 50833451 50833451 G A USP50 Missense_Mutation p.S152F 0.23 deleterious(0.05) benign(0.002) TCGA-W3-AA1V-06 15 50901810 50901810 G A TRPM7 Missense_Mutation p.H850Y 0.31 deleterious(0.01) possibly_damaging(0.885) TCGA-W3-AA1V-06 15 51397392 51397392 C T TNFAIP8L3 5'UTR 0.50 TCGA-W3-AA1V-06 15 51747407 51747407 C T DMXL2 Missense_Mutation p.E2828K 0.32 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 15 52497133 52497133 G A MYO5C Silent p.I1583I 0.37 TCGA-W3-AA1V-06 15 52646097 52646097 C T MYO5A Missense_Mutation p.E1180K 0.29 tolerated(0.09) probably_damaging(0.968) TCGA-W3-AA1V-06 15 53907982 53907982 C T WDR72 Silent p.V807V 0.37 TCGA-W3-AA1V-06 15 53957929 53957929 C T WDR72 Missense_Mutation p.R601Q 0.20 tolerated(0.21) benign(0.008) TCGA-W3-AA1V-06 15 54306874 54306874 G A UNC13C Missense_Mutation p.E592K 0.34 deleterious_low_confidence(0.01) benign(0.16) TCGA-W3-AA1V-06 15 54542593 54542593 G A UNC13C Silent p.V1133V 0.32 TCGA-W3-AA1V-06 15 54786898 54786898 C T UNC13C Missense_Mutation p.P1676S 0.34 tolerated_low_confidence(0.06) benign(0.01) TCGA-W3-AA1V-06 15 54841834 54841834 G A UNC13C Missense_Mutation p.G1941E 0.29 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-W3-AA1V-06 15 54914599 54914599 C T UNC13C Missense_Mutation p.H2061Y 0.31 tolerated_low_confidence(0.07) benign(0.005) TCGA-W3-AA1V-06 15 54919039 54919039 G A UNC13C Missense_Mutation p.E2125K 0.29 deleterious_low_confidence(0) benign(0.43) TCGA-W3-AA1V-06 15 55964683 55964683 G A PRTG Silent p.F667F 0.26 TCGA-W3-AA1V-06 15 56923692 56923692 A G ZNF280D 3'UTR 0.34 TCGA-W3-AA1V-06 15 57730881 57730881 A T CGNL1 Missense_Mutation p.K228N 0.34 tolerated(0.53) benign(0.002) TCGA-W3-AA1V-06 15 58840562 58840562 G A LIPC Missense_Mutation p.R281Q 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 58855824 58855824 G A LIPC Nonsense_Mutation p.W430* 0.35 TCGA-W3-AA1V-06 15 59180621 59180621 G A SLTM Missense_Mutation p.P780S 0.32 deleterious(0.04) possibly_damaging(0.655) TCGA-W3-AA1V-06 15 63127997 63127997 C T TLN2 Missense_Mutation p.A2397V 0.36 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 15 63597863 63597863 C T APH1B Silent p.I219I 0.28 TCGA-W3-AA1V-06 15 63597864 63597864 C T APH1B Silent p.L220L 0.29 TCGA-W3-AA1V-06 15 64010835 64010835 G A HERC1 Missense_Mutation p.R1306C 0.46 probably_damaging(0.965) TCGA-W3-AA1V-06 15 65040676 65040676 G A RBPMS2 Missense_Mutation p.S170F 0.24 deleterious(0.01) benign(0.342) TCGA-W3-AA1V-06 15 65041331 65041331 C T RBPMS2 Missense_Mutation p.E96K 0.46 deleterious(0.01) probably_damaging(0.936) TCGA-W3-AA1V-06 15 65157708 65157708 C T PLEKHO2 Missense_Mutation p.P365L 0.33 tolerated(0.25) benign(0.001) TCGA-W3-AA1V-06 15 65370014 65370014 C T KBTBD13 Silent p.F287F 0.36 TCGA-W3-AA1V-06 15 65447251 65447251 G A CLPX Missense_Mutation p.P494S 0.39 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 15 65551827 65551827 G A PARP16 Missense_Mutation p.S297F 0.37 tolerated(0.72) benign(0.008) TCGA-W3-AA1V-06 15 65917265 65917265 C T SLC24A1 Missense_Mutation p.P283S 0.34 benign(0.002) TCGA-W3-AA1V-06 15 66621566 66621566 A T DIS3L Silent p.A788A 0.38 TCGA-W3-AA1V-06 15 66791710 66791710 G A RPL4 3'UTR 0.35 TCGA-W3-AA1V-06 15 67571772 67571772 C A IQCH Missense_Mutation p.F103L 0.24 tolerated(0.79) possibly_damaging(0.616) TCGA-W3-AA1V-06 15 70959279 70959279 G A UACA Silent p.A1248A 0.36 TCGA-W3-AA1V-06 15 72030121 72030121 G A THSD4 Missense_Mutation p.G561R 0.29 tolerated(0.68) benign(0) TCGA-W3-AA1V-06 15 72105756 72105756 G A CTD-2524L6.3 5'Flank 0.50 TCGA-W3-AA1V-06 15 72541616 72541616 G A PARP6 Missense_Mutation p.P511S 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-W3-AA1V-06 15 73635897 73635897 G A HCN4 Silent p.F346F 0.65 TCGA-W3-AA1V-06 15 73862625 73862625 A G NPTN Missense_Mutation p.V327A 0.31 tolerated(0.84) benign(0.006) TCGA-W3-AA1V-06 15 74032878 74032878 C T C15orf59 Missense_Mutation p.G88S 0.28 tolerated(0.13) probably_damaging(1) TCGA-W3-AA1V-06 15 74326710 74326710 C G PML Intron 0.29 TCGA-W3-AA1V-06 15 74335497 74335497 C T PML Intron 0.50 TCGA-W3-AA1V-06 15 74653913 74653913 C T CYP11A1 Intron 0.24 TCGA-W3-AA1V-06 15 75044499 75044499 C T CYP1A2 Silent p.L359L 0.38 TCGA-W3-AA1V-06 15 75044535 75044535 C T CYP1A2 Silent p.F371F 0.43 TCGA-W3-AA1V-06 15 75143743 75143743 G A SCAMP2 Silent p.I141I 0.29 TCGA-W3-AA1V-06 15 75310780 75310780 C T SCAMP5 Silent p.S139S 0.27 TCGA-W3-AA1V-06 15 75503379 75503379 C A C15orf39 Silent p.T1022T 0.33 TCGA-W3-AA1V-06 15 76075173 76075173 C T RN7SL319P 5'Flank 0.29 TCGA-W3-AA1V-06 15 76191946 76191946 C T UBE2Q2 3'UTR 0.33 TCGA-W3-AA1V-06 15 76462183 76462183 G A C15orf27 Silent p.G161G 0.34 TCGA-W3-AA1V-06 15 77046277 77046277 G A SCAPER Missense_Mutation p.R580W 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 15 78390301 78390301 C T SH2D7 Silent p.I99I 0.33 TCGA-W3-AA1V-06 15 78485862 78485862 C T ACSBG1 Missense_Mutation p.E217K 0.33 tolerated(0.14) benign(0.232) TCGA-W3-AA1V-06 15 78921816 78921816 G A CHRNB4 Silent p.F277F 0.38 TCGA-W3-AA1V-06 15 79058539 79058539 G A ADAMTS7 Silent p.S1238S 0.24 TCGA-W3-AA1V-06 15 81176623 81176623 G A KIAA1199 Missense_Mutation p.R242Q 0.39 deleterious(0.05) benign(0.016) TCGA-W3-AA1V-06 15 81440214 81440214 C T C15orf26 Missense_Mutation p.L218F 0.41 deleterious(0.02) benign(0.033) TCGA-W3-AA1V-06 15 81592710 81592710 C T IL16 Missense_Mutation p.P1015S 0.25 tolerated(0.28) benign(0.023) TCGA-W3-AA1V-06 15 82444386 82444386 G A EFTUD1 Silent p.F803F 0.25 TCGA-W3-AA1V-06 15 83926632 83926632 G A BNC1 Silent p.P849P 0.38 TCGA-W3-AA1V-06 15 83932619 83932619 C T BNC1 Missense_Mutation p.D462N 0.56 deleterious(0) benign(0.411) TCGA-W3-AA1V-06 15 83933180 83933180 C T BNC1 Missense_Mutation p.D275N 0.40 deleterious(0.04) benign(0.297) TCGA-W3-AA1V-06 15 84651595 84651595 C T ADAMTSL3 Missense_Mutation p.S1072F 0.46 deleterious(0.04) benign(0.008) TCGA-W3-AA1V-06 15 84651596 84651596 C T ADAMTSL3 Silent p.S1072S 0.46 TCGA-W3-AA1V-06 15 86312138 86312138 C T KLHL25 Missense_Mutation p.G302S 0.22 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 15 86312924 86312924 G A KLHL25 Missense_Mutation p.R40C 0.30 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 15 86808023 86808023 C T AGBL1 Missense_Mutation p.P495S 0.41 tolerated(0.1) benign(0.209) TCGA-W3-AA1V-06 15 88420180 88420180 C G NTRK3 Missense_Mutation p.D836H 0.50 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 15 89002792 89002792 G A MRPL46 3'UTR 0.32 TCGA-W3-AA1V-06 15 89402175 89402175 G A ACAN Missense_Mutation p.S2120N 0.33 tolerated(0.19) benign(0.347) TCGA-W3-AA1V-06 15 89414618 89414618 G A ACAN Missense_Mutation p.E2318K 0.22 tolerated(0.16) possibly_damaging(0.679) TCGA-W3-AA1V-06 15 90188386 90188386 C T KIF7 Silent p.G683G 0.19 TCGA-W3-AA1V-06 15 90272320 90272320 C T WDR93 Silent p.P373P 0.37 TCGA-W3-AA1V-06 15 90342528 90342528 G A ANPEP Missense_Mutation p.R658W 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 15 90610689 90610689 C T ZNF710 Missense_Mutation p.P107L 0.44 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1V-06 15 90999386 90999386 A T IQGAP1 Missense_Mutation p.I539F 0.31 deleterious(0.02) possibly_damaging(0.866) TCGA-W3-AA1V-06 15 91452725 91452725 C T MAN2A2 Silent p.L455L 0.36 TCGA-W3-AA1V-06 15 92647713 92647713 G A SLCO3A1 Missense_Mutation p.G317E 0.25 tolerated(0.25) benign(0.434) TCGA-W3-AA1V-06 15 92694193 92694193 G A SLCO3A1 Missense_Mutation p.E568K 0.35 deleterious(0) possibly_damaging(0.676) TCGA-W3-AA1V-06 15 93015444 93015444 G A C15orf32 Silent p.G22G 0.28 TCGA-W3-AA1V-06 15 93015513 93015513 C T C15orf32 Silent p.F45F 0.25 TCGA-W3-AA1V-06 15 93486224 93486224 C T CHD2 Silent p.S326S 0.33 TCGA-W3-AA1V-06 15 93499690 93499690 C T CHD2 Missense_Mutation p.T604I 0.33 deleterious(0.02) benign(0.186) TCGA-W3-AA1V-06 15 94841503 94841503 G A MCTP2 Silent p.L3L 0.36 TCGA-W3-AA1V-06 15 97328431 97328431 C T SPATA8 3'UTR 0.17 TCGA-W3-AA1V-06 16 10032006 10032006 G A GRIN2A Missense_Mutation p.P273S 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 16 10032149 10032149 G A GRIN2A Missense_Mutation p.S225F 0.29 deleterious(0) probably_damaging(0.914) TCGA-W3-AA1V-06 16 10032391 10032391 G A GRIN2A Silent p.F144F 0.29 TCGA-W3-AA1V-06 16 10273887 10273887 G A GRIN2A Missense_Mutation p.H128Y 0.23 tolerated(0.14) benign(0.004) TCGA-W3-AA1V-06 16 10721563 10721563 C T TEKT5 Missense_Mutation p.M445I 0.32 tolerated(0.4) benign(0.004) TCGA-W3-AA1V-06 16 10996625 10996625 G A CIITA Missense_Mutation p.G247R 0.49 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 16 11000498 11000498 C T CIITA Silent p.A383A 0.29 TCGA-W3-AA1V-06 16 11272360 11272360 C T CLEC16A Missense_Mutation p.S992F 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-AA1V-06 16 1129889 1129889 C T SSTR5 Missense_Mutation p.R341W 0.27 deleterious(0.01) benign(0.409) TCGA-W3-AA1V-06 16 11369832 11369832 A G PRM2 Intron 0.33 TCGA-W3-AA1V-06 16 12061600 12061600 G A TNFRSF17 Missense_Mutation p.E151K 0.21 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 16 1278731 1278731 G A TPSB2 Silent p.A248A 0.48 TCGA-W3-AA1V-06 16 1392000 1392000 G A BAIAP3 Missense_Mutation p.D299N 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 16 14042253 14042253 C T ERCC4 3'UTR 0.30 TCGA-W3-AA1V-06 16 14280709 14280709 C T MKL2 Intron 0.15 TCGA-W3-AA1V-06 16 14859121 14859121 G A NPIPA2 Missense_Mutation p.D302N 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-W3-AA1V-06 16 14970238 14970238 C T NOMO1 Silent p.I793I 0.25 TCGA-W3-AA1V-06 16 15162073 15162073 C T RRN3 Silent p.L502L 0.25 TCGA-W3-AA1V-06 16 15718712 15718712 G A KIAA0430 Silent p.F728F 0.61 TCGA-W3-AA1V-06 16 15815323 15815323 C T MYH11 Missense_Mutation p.E1519K 0.56 possibly_damaging(0.864) TCGA-W3-AA1V-06 16 15835344 15835344 C T MYH11 Silent p.R952R 0.31 TCGA-W3-AA1V-06 16 15835345 15835345 C T MYH11 Missense_Mutation p.R952K 0.30 benign(0) TCGA-W3-AA1V-06 16 15841493 15841493 C T MYH11 Missense_Mutation p.R789Q 0.27 probably_damaging(0.998) TCGA-W3-AA1V-06 16 1616294 1616294 T A IFT140 Splice_Site p.X591_splice 0.19 TCGA-W3-AA1V-06 16 16232257 16232257 C T ABCC1 Silent p.A1443A 0.16 TCGA-W3-AA1V-06 16 16267245 16267245 G A ABCC6 Missense_Mutation p.P895S 0.25 tolerated(0.46) benign(0.002) TCGA-W3-AA1V-06 16 16297323 16297323 C T ABCC6 Silent p.G314G 0.23 TCGA-W3-AA1V-06 16 1705998 1705998 C T CRAMP1L Missense_Mutation p.R414C 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 16 1712779 1712779 C T CRAMP1L Silent p.F871F 0.38 TCGA-W3-AA1V-06 16 1749067 1749067 C T HN1L 3'UTR 0.29 TCGA-W3-AA1V-06 16 18554958 18554958 G T NOMO2 Missense_Mutation p.S239Y 0.19 deleterious(0.04) probably_damaging(0.976) TCGA-W3-AA1V-06 16 1877572 1877572 G A FAHD1 Silent p.K114K 0.25 TCGA-W3-AA1V-06 16 1884351 1884351 C T MEIOB Missense_Mutation p.R441K 0.34 tolerated(0.95) benign(0.008) TCGA-W3-AA1V-06 16 19070890 19070890 C T TMC7 Intron 0.29 TCGA-W3-AA1V-06 16 19078976 19078976 T C COQ7 5'UTR 0.27 TCGA-W3-AA1V-06 16 19195337 19195337 C T SYT17 Silent p.T273T 0.15 TCGA-W3-AA1V-06 16 19471618 19471618 G A TMC5 Silent p.R370R 0.20 TCGA-W3-AA1V-06 16 19539333 19539333 C T CCP110 Missense_Mutation p.L44F 0.49 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 16 19592973 19592973 C T C16orf62 Nonsense_Mutation p.Q302* 0.15 TCGA-W3-AA1V-06 16 1962171 1962171 G A HS3ST6 Missense_Mutation p.T119I 0.29 deleterious(0.02) probably_damaging(0.944) TCGA-W3-AA1V-06 16 19718258 19718258 A G KNOP1 Missense_Mutation p.S451P 0.28 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 16 19800225 19800225 C T IQCK Missense_Mutation p.S224F 0.26 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1V-06 16 20043190 20043190 G A GPR139 Missense_Mutation p.P310L 0.40 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 16 20043849 20043849 G A GPR139 Silent p.F90F 0.46 TCGA-W3-AA1V-06 16 2017749 2017749 G A RNF151 Missense_Mutation p.R58K 0.31 deleterious(0) possibly_damaging(0.842) TCGA-W3-AA1V-06 16 20337781 20337781 C T GP2 5'UTR 0.14 TCGA-W3-AA1V-06 16 20384139 20384139 C T PDILT Silent p.K301K 0.45 TCGA-W3-AA1V-06 16 20396078 20396078 T A PDILT Nonsense_Mutation p.K100* 0.27 TCGA-W3-AA1V-06 16 20430755 20430755 C T ACSM5 Silent p.L207L 0.43 TCGA-W3-AA1V-06 16 20448685 20448685 G A ACSM5 Missense_Mutation p.G511E 0.39 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 16 20492238 20492238 G A ACSM2A Missense_Mutation p.G502R 0.16 deleterious(0.02) benign(0.026) TCGA-W3-AA1V-06 16 20554532 20554532 C T ACSM2B Missense_Mutation p.G445E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 16 20634891 20634891 C T ACSM1 Missense_Mutation p.E551K 0.20 deleterious(0) probably_damaging(0.946) TCGA-W3-AA1V-06 16 20787288 20787288 C T ACSM3 Missense_Mutation p.S116F 0.55 deleterious(0) possibly_damaging(0.748) TCGA-W3-AA1V-06 16 20994080 20994080 G A DNAH3 Silent p.L2608L 0.17 TCGA-W3-AA1V-06 16 21065834 21065834 C T DNAH3 Missense_Mutation p.D1316N 0.21 tolerated(0.54) benign(0.001) TCGA-W3-AA1V-06 16 21151908 21151908 C T DNAH3 Silent p.Q215Q 0.20 TCGA-W3-AA1V-06 16 2122313 2122313 C T TSC2 Silent p.I723I 0.18 TCGA-W3-AA1V-06 16 21261081 21261081 G A ANKS4B Missense_Mutation p.G65E 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 16 2153715 2153715 G A PKD1 Silent p.I2781I 0.28 TCGA-W3-AA1V-06 16 21654448 21654448 C T IGSF6 Missense_Mutation p.E205K 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-W3-AA1V-06 16 21817507 21817507 G A RRN3P1 RNA 0.13 TCGA-W3-AA1V-06 16 22278092 22278092 C T EEF2K Silent p.F553F 0.31 TCGA-W3-AA1V-06 16 22441146 22441146 G C RRN3P3 RNA 0.51 TCGA-W3-AA1V-06 16 2258918 2258918 G A MLST8 3'UTR 0.34 TCGA-W3-AA1V-06 16 23080863 23080863 G A USP31 Missense_Mutation p.P855S 0.45 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 16 23197875 23197875 C T SCNN1G Missense_Mutation p.P95S 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 16 23646192 23646192 G A PALB2 Nonsense_Mutation p.Q559* 0.19 TCGA-W3-AA1V-06 16 2369719 2369719 G A ABCA3 Missense_Mutation p.P246S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 16 23701381 23701381 C T PLK1 Silent p.S603S 0.54 TCGA-W3-AA1V-06 16 23713519 23713519 T G ERN2 Missense_Mutation p.E434A 0.22 tolerated(0.13) benign(0.031) TCGA-W3-AA1V-06 16 23721855 23721855 C T ERN2 Missense_Mutation p.G120E 0.54 tolerated(0.1) probably_damaging(0.982) TCGA-W3-AA1V-06 16 23722336 23722336 G A ERN2 Missense_Mutation p.H81Y 0.22 tolerated_low_confidence(0.14) benign(0.351) TCGA-W3-AA1V-06 16 24231362 24231362 C T PRKCB 3'UTR 0.30 TCGA-W3-AA1V-06 16 24580150 24580150 C T RBBP6 Silent p.R713R 0.26 TCGA-W3-AA1V-06 16 24583092 24583092 C T RBBP6 Missense_Mutation p.R1569C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 16 24583463 24583463 C T RBBP6 Silent p.S1692S 0.48 TCGA-W3-AA1V-06 16 24909344 24909344 G A SLC5A11 Missense_Mutation p.G307E 0.25 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 16 25255226 25255226 G A ZKSCAN2 Missense_Mutation p.P621S 0.17 tolerated(0.17) benign(0.432) TCGA-W3-AA1V-06 16 25704368 25704368 C T HS3ST4 Silent p.T210T 0.47 TCGA-W3-AA1V-06 16 25704386 25704386 G A HS3ST4 Silent p.A216A 0.47 TCGA-W3-AA1V-06 16 26147540 26147540 C T HS3ST4 Nonsense_Mutation p.Q448* 0.29 TCGA-W3-AA1V-06 16 27236428 27236428 G A NSMCE1 3'UTR 0.78 TCGA-W3-AA1V-06 16 27460055 27460055 G T IL21R Missense_Mutation p.Q356H 0.16 tolerated(0.21) benign(0.1) TCGA-W3-AA1V-06 16 27732946 27732946 G A KIAA0556 Missense_Mutation p.R558Q 0.32 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1V-06 16 2813915 2813915 C T SRRM2 Missense_Mutation p.S1129F 0.23 benign(0.184) TCGA-W3-AA1V-06 16 2814081 2814081 A T SRRM2 Missense_Mutation p.K1184N 0.34 unknown(0) TCGA-W3-AA1V-06 16 28328872 28328872 G A SBK1 Missense_Mutation p.E54K 0.49 tolerated(0.12) benign(0.046) TCGA-W3-AA1V-06 16 28331765 28331765 C T SBK1 Silent p.F266F 0.64 TCGA-W3-AA1V-06 16 28507637 28507637 C T APOBR Silent p.P425P 0.21 TCGA-W3-AA1V-06 16 28508931 28508931 C T APOBR Missense_Mutation p.P857S 0.27 tolerated(0.42) benign(0.001) TCGA-W3-AA1V-06 16 28515017 28515017 G A IL27 Missense_Mutation p.S101F 0.31 deleterious(0) probably_damaging(0.912) TCGA-W3-AA1V-06 16 28515058 28515058 G A IL27 Silent p.L87L 0.32 TCGA-W3-AA1V-06 16 28515238 28515238 C T IL27 Silent p.R55R 0.57 TCGA-W3-AA1V-06 16 28603445 28603445 C A SULT1A2 Missense_Mutation p.W264C 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1V-06 16 2868924 2868924 G A PRSS21 Silent p.R168R 0.48 TCGA-W3-AA1V-06 16 28909747 28909747 A C ATP2A1 Missense_Mutation p.D580A 0.32 deleterious(0.01) possibly_damaging(0.788) TCGA-W3-AA1V-06 16 28925590 28925590 G A RABEP2 Silent p.V287V 0.41 TCGA-W3-AA1V-06 16 28995597 28995597 C T SPNS1 Missense_Mutation p.P522S 0.27 deleterious(0.05) benign(0.408) TCGA-W3-AA1V-06 16 28995598 28995598 C T SPNS1 Missense_Mutation p.P522L 0.27 deleterious(0) probably_damaging(0.928) TCGA-W3-AA1V-06 16 29370641 29370641 C T SNX29P2 RNA 0.14 TCGA-W3-AA1V-06 16 29706122 29706122 C T QPRT Missense_Mutation p.P51S 0.20 tolerated(0.21) possibly_damaging(0.857) TCGA-W3-AA1V-06 16 29859099 29859099 C T MVP Missense_Mutation p.S824F 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-W3-AA1V-06 16 29884037 29884037 C T SEZ6L2 Intron 0.31 TCGA-W3-AA1V-06 16 29910363 29910363 C T SEZ6L2 5'UTR 0.33 TCGA-W3-AA1V-06 16 29912827 29912827 C A ASPHD1 Missense_Mutation p.P179T 0.48 tolerated(0.1) benign(0.043) TCGA-W3-AA1V-06 16 29912828 29912828 C T ASPHD1 Missense_Mutation p.P179L 0.47 tolerated(0.08) benign(0.059) TCGA-W3-AA1V-06 16 29912887 29912887 C T ASPHD1 Missense_Mutation p.P199S 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1V-06 16 29990608 29990608 C T TAOK2 Missense_Mutation p.S181F 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1V-06 16 30035149 30035149 A T C16orf92 Missense_Mutation p.R78W 0.28 deleterious(0) probably_damaging(0.938) TCGA-W3-AA1V-06 16 30035339 30035339 C T C16orf92 Silent p.F103F 0.20 TCGA-W3-AA1V-06 16 3016399 3016399 G A KREMEN2 Silent p.T145T 0.19 TCGA-W3-AA1V-06 16 3025564 3025564 C T PKMYT1 Missense_Mutation p.V210I 0.20 tolerated(0.17) benign(0.048) TCGA-W3-AA1V-06 16 3025565 3025565 C T PKMYT1 Silent p.Q209Q 0.20 TCGA-W3-AA1V-06 16 30408970 30408970 C T ZNF48 Silent p.T133T 0.35 TCGA-W3-AA1V-06 16 30455931 30455931 C T SEPHS2 Missense_Mutation p.G373E 0.18 possibly_damaging(0.905) TCGA-W3-AA1V-06 16 30490717 30490717 G A ITGAL Missense_Mutation p.E171K 0.19 deleterious(0.01) possibly_damaging(0.796) TCGA-W3-AA1V-06 16 30507594 30507594 G A ITGAL Silent p.G560G 0.31 TCGA-W3-AA1V-06 16 30510807 30510807 C T ITGAL Silent p.F714F 0.16 TCGA-W3-AA1V-06 16 30536689 30536689 G A ZNF768 Missense_Mutation p.P258S 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-W3-AA1V-06 16 30566567 30566567 T C ZNF764 Missense_Mutation p.D392G 0.29 deleterious(0) possibly_damaging(0.798) TCGA-W3-AA1V-06 16 30680926 30680926 C T FBRS Missense_Mutation p.S968F 0.29 unknown(0) TCGA-W3-AA1V-06 16 30732617 30732617 C T SRCAP Missense_Mutation p.P1121S 0.24 unknown(0) TCGA-W3-AA1V-06 16 3076532 3076532 C T THOC6 Silent p.L143L 0.21 TCGA-W3-AA1V-06 16 30899160 30899160 G A BCL7C 3'UTR 0.52 TCGA-W3-AA1V-06 16 30970487 30970487 C T SETD1A Missense_Mutation p.L76F 0.23 benign(0.32) TCGA-W3-AA1V-06 16 30975627 30975627 C T SETD1A Silent p.D284D 0.48 TCGA-W3-AA1V-06 16 30976306 30976306 C T SETD1A Missense_Mutation p.P415S 0.51 benign(0.157) TCGA-W3-AA1V-06 16 30976439 30976439 C T SETD1A Missense_Mutation p.S459F 0.17 possibly_damaging(0.831) TCGA-W3-AA1V-06 16 30980656 30980656 C T SETD1A Missense_Mutation p.P934L 0.20 benign(0.206) TCGA-W3-AA1V-06 16 31072325 31072325 G A ZNF668 3'UTR 0.69 TCGA-W3-AA1V-06 16 31087723 31087723 C T ZNF646 Silent p.H26H 0.39 TCGA-W3-AA1V-06 16 3117571 3117571 G A IL32 Missense_Mutation p.R24K 0.56 tolerated(0.91) benign(0.003) TCGA-W3-AA1V-06 16 3119322 3119322 C T IL32 Missense_Mutation p.P178L 0.09 deleterious_low_confidence(0.01) benign(0.382) TCGA-W3-AA1V-06 16 31309173 31309173 G A ITGAM Silent p.L536L 0.22 TCGA-W3-AA1V-06 16 31374349 31374349 G A ITGAX Missense_Mutation p.E485K 0.28 tolerated(0.12) benign(0.166) TCGA-W3-AA1V-06 16 31388221 31388221 C T ITGAX Silent p.F870F 0.29 TCGA-W3-AA1V-06 16 31473589 31473589 C A ARMC5 Missense_Mutation p.P241T 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-W3-AA1V-06 16 31473590 31473590 C T ARMC5 Missense_Mutation p.P241L 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-W3-AA1V-06 16 31477486 31477486 C T ARMC5 Missense_Mutation p.P695L 0.28 tolerated(0.18) possibly_damaging(0.614) TCGA-W3-AA1V-06 16 31488940 31488940 C T TGFB1I1 3'UTR 0.27 TCGA-W3-AA1V-06 16 3170085 3170085 C T ZNF205 Missense_Mutation p.P475L 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 16 32077585 32077585 G A IGHV3OR16-9 Missense_Mutation p.R67Q 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.669) TCGA-W3-AA1V-06 16 3254944 3254944 G A OR1F1 Missense_Mutation p.G233E 0.27 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 16 3293890 3293890 G A MEFV Missense_Mutation p.P588S 0.26 tolerated(0.19) benign(0.005) TCGA-W3-AA1V-06 16 33020774 33020774 G A IGHV3OR16-8 Missense_Mutation p.G61E 0.50 tolerated_low_confidence(0.1) possibly_damaging(0.841) TCGA-W3-AA1V-06 16 3350656 3350656 G A TIGD7 5'UTR 0.24 TCGA-W3-AA1V-06 16 343666 343666 G A AXIN1 Missense_Mutation p.L670F 0.22 tolerated(0.3) benign(0.042) TCGA-W3-AA1V-06 16 3490813 3490813 A T ZNF597 Missense_Mutation p.L52M 0.48 tolerated(0.13) probably_damaging(0.976) TCGA-W3-AA1V-06 16 3569974 3569974 C T CLUAP1 Silent p.I217I 0.22 TCGA-W3-AA1V-06 16 3613390 3613390 G A NLRC3 Silent p.F563F 0.27 TCGA-W3-AA1V-06 16 3652184 3652184 G A SLX4 Silent p.F295F 0.16 TCGA-W3-AA1V-06 16 3900958 3900958 G A CREBBP Silent p.P46P 0.21 TCGA-W3-AA1V-06 16 4015835 4015835 C T ADCY9 Missense_Mutation p.E1335K 0.21 tolerated_low_confidence(0.33) benign(0.098) TCGA-W3-AA1V-06 16 4242056 4242056 C T SRL 3'UTR 0.24 TCGA-W3-AA1V-06 16 4242292 4242292 C T SRL Silent p.L428L 0.20 TCGA-W3-AA1V-06 16 4431731 4431731 G A VASN Missense_Mutation p.G285S 0.17 tolerated(0.86) benign(0.001) TCGA-W3-AA1V-06 16 46705730 46705730 G A VPS35 Nonsense_Mutation p.Q471* 0.57 TCGA-W3-AA1V-06 16 46962951 46962951 C T GPT2 3'UTR 0.18 TCGA-W3-AA1V-06 16 47007475 47007475 G A DNAJA2 Silent p.N3N 0.19 TCGA-W3-AA1V-06 16 47007476 47007476 T A DNAJA2 Missense_Mutation p.N3I 0.19 deleterious_low_confidence(0.02) benign(0.246) TCGA-W3-AA1V-06 16 47494825 47494825 G A ITFG1 Silent p.A44A 0.52 TCGA-W3-AA1V-06 16 47684509 47684509 C T PHKB Missense_Mutation p.L618F 0.23 tolerated(0.08) benign(0.046) TCGA-W3-AA1V-06 16 4774772 4774772 G A ANKS3 Silent p.I184I 0.23 TCGA-W3-AA1V-06 16 48117952 48117952 C T ABCC12 Missense_Mutation p.M1287I 0.45 tolerated(1) benign(0) TCGA-W3-AA1V-06 16 48249255 48249255 C T ABCC11 Missense_Mutation p.V318I 0.47 tolerated(0.43) benign(0.023) TCGA-W3-AA1V-06 16 48256554 48256554 C T ABCC11 Silent p.E244E 0.63 TCGA-W3-AA1V-06 16 4834014 4834014 C T SEPT12 Missense_Mutation p.E144K 0.23 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 16 4920849 4920849 C T UBN1 Silent p.L479L 0.37 TCGA-W3-AA1V-06 16 49407878 49407878 G A C16orf78 Missense_Mutation p.D10N 0.17 tolerated(0.3) benign(0.012) TCGA-W3-AA1V-06 16 49412485 49412485 G A C16orf78 Silent p.K125K 0.19 TCGA-W3-AA1V-06 16 49433209 49433209 C T C16orf78 3'UTR 0.57 TCGA-W3-AA1V-06 16 49525109 49525109 G A ZNF423 3'UTR 0.30 TCGA-W3-AA1V-06 16 49660120 49660120 C T ZNF423 Missense_Mutation p.E1180K 0.22 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 16 49670793 49670793 C T ZNF423 Nonsense_Mutation p.W757* 0.13 TCGA-W3-AA1V-06 16 50326721 50326721 C T ADCY7 Silent p.I224I 0.23 TCGA-W3-AA1V-06 16 50338406 50338406 C T ADCY7 Missense_Mutation p.H502Y 0.56 deleterious(0) possibly_damaging(0.887) TCGA-W3-AA1V-06 16 5075451 5075451 G C NAGPA 3'UTR 0.20 TCGA-W3-AA1V-06 16 5097965 5097965 T C C16orf89 Missense_Mutation p.D290G 0.16 tolerated(0.37) benign(0.004) TCGA-W3-AA1V-06 16 51171370 51171370 G A SALL1 Missense_Mutation p.P1210S 0.26 tolerated(0.14) benign(0.14) TCGA-W3-AA1V-06 16 51173698 51173698 G A SALL1 Missense_Mutation p.S812F 0.35 tolerated(0.07) possibly_damaging(0.898) TCGA-W3-AA1V-06 16 51174411 51174411 C T SALL1 Silent p.E574E 0.22 TCGA-W3-AA1V-06 16 51175032 51175032 G A SALL1 Silent p.N367N 0.22 TCGA-W3-AA1V-06 16 52497935 52497935 G A TOX3 Missense_Mutation p.P107S 0.13 tolerated(0.28) benign(0.32) TCGA-W3-AA1V-06 16 53348308 53348308 C T CHD9 Silent p.T2398T 0.33 TCGA-W3-AA1V-06 16 53348309 53348309 C T CHD9 Missense_Mutation p.L2399F 0.33 unknown(0) TCGA-W3-AA1V-06 16 53683004 53683004 A C RPGRIP1L Missense_Mutation p.F726V 0.15 deleterious(0) possibly_damaging(0.908) TCGA-W3-AA1V-06 16 54319240 54319240 G A IRX3 Missense_Mutation p.L185F 0.65 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 16 54319241 54319241 G A IRX3 Silent p.R184R 0.65 TCGA-W3-AA1V-06 16 55616939 55616939 C T LPCAT2 Missense_Mutation p.P522S 0.22 tolerated(0.14) benign(0.002) TCGA-W3-AA1V-06 16 55854382 55854382 G A CES1 Missense_Mutation p.P235S 0.31 deleterious(0.01) possibly_damaging(0.783) TCGA-W3-AA1V-06 16 55880748 55880748 T A CES5A Silent p.G505G 0.60 TCGA-W3-AA1V-06 16 55883535 55883535 C T CES5A Splice_Site p.X504_splice 0.20 TCGA-W3-AA1V-06 16 56370679 56370679 G A GNAO1 Silent p.K210K 0.32 TCGA-W3-AA1V-06 16 56782175 56782175 T C NUP93 Missense_Mutation p.F6L 0.72 tolerated(0.06) probably_damaging(0.997) TCGA-W3-AA1V-06 16 57005973 57005973 C T CETP Missense_Mutation p.S243F 0.26 deleterious(0) possibly_damaging(0.849) TCGA-W3-AA1V-06 16 57597858 57597858 C T GPR114 Silent p.I132I 0.67 TCGA-W3-AA1V-06 16 57597882 57597882 C T GPR114 Silent p.H140H 0.18 TCGA-W3-AA1V-06 16 57718048 57718048 C T GPR97 Silent p.H362H 0.55 TCGA-W3-AA1V-06 16 57722462 57722462 C T GPR97 3'UTR 0.50 TCGA-W3-AA1V-06 16 57732784 57732784 G A CCDC135 Missense_Mutation p.D76N 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-W3-AA1V-06 16 57965772 57965772 C T CNGB1 Silent p.T461T 0.18 TCGA-W3-AA1V-06 16 58030907 58030907 G A ZNF319 Silent p.P421P 0.10 TCGA-W3-AA1V-06 16 58220709 58220709 G A CSNK2A2 Missense_Mutation p.R90C 0.38 tolerated(0.36) possibly_damaging(0.893) TCGA-W3-AA1V-06 16 58312467 58312467 G A CCDC113 Missense_Mutation p.V325I 0.68 tolerated(0.06) benign(0.127) TCGA-W3-AA1V-06 16 58314292 58314292 C T PRSS54 Missense_Mutation p.E342K 0.61 deleterious(0.05) benign(0.149) TCGA-W3-AA1V-06 16 597807 597807 C T CAPN15 Silent p.D323D 0.68 TCGA-W3-AA1V-06 16 599051 599051 C T CAPN15 Missense_Mutation p.P503L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 16 613451 613451 T A C16orf11 Missense_Mutation p.Y53N 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 16 615267 615267 C T C16orf11 Missense_Mutation p.A559V 0.17 tolerated_low_confidence(0.15) possibly_damaging(0.645) TCGA-W3-AA1V-06 16 61747826 61747826 G A CDH8 Missense_Mutation p.P525S 0.31 tolerated(0.22) probably_damaging(0.999) TCGA-W3-AA1V-06 16 61761039 61761039 C T CDH8 Missense_Mutation p.E499K 0.24 tolerated(0.42) benign(0.225) TCGA-W3-AA1V-06 16 66422228 66422228 G A CDH5 Silent p.G167G 0.19 TCGA-W3-AA1V-06 16 67221667 67221667 C T EXOC3L1 Silent p.R167R 0.13 TCGA-W3-AA1V-06 16 67223063 67223063 C T EXOC3L1 Missense_Mutation p.E23K 0.20 deleterious(0) probably_damaging(0.927) TCGA-W3-AA1V-06 16 67325600 67325600 C T KCTD19 Missense_Mutation p.E787K 0.47 tolerated(0.64) benign(0.008) TCGA-W3-AA1V-06 16 67333439 67333439 G A KCTD19 Silent p.P271P 0.61 TCGA-W3-AA1V-06 16 67572683 67572683 C T FAM65A Silent p.P91P 0.12 TCGA-W3-AA1V-06 16 67680824 67680824 C T RLTPR Missense_Mutation p.R187C 0.36 tolerated(0.08) possibly_damaging(0.731) TCGA-W3-AA1V-06 16 67683370 67683370 G A RLTPR Silent p.V589V 0.53 TCGA-W3-AA1V-06 16 67694194 67694194 G A ACD Missense_Mutation p.P63L 0.27 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-W3-AA1V-06 16 67805981 67805981 C T RANBP10 Missense_Mutation p.G119E 0.70 deleterious(0.01) possibly_damaging(0.879) TCGA-W3-AA1V-06 16 67865942 67865942 G A CENPT Missense_Mutation p.P120L 0.60 deleterious(0.03) possibly_damaging(0.813) TCGA-W3-AA1V-06 16 67917934 67917934 C T EDC4 Silent p.A1363A 0.22 TCGA-W3-AA1V-06 16 68021453 68021453 G A DPEP2 Missense_Mutation p.L473F 0.14 tolerated_low_confidence(0.1) benign(0.01) TCGA-W3-AA1V-06 16 68395592 68395592 C T SMPD3 Missense_Mutation p.G594R 0.16 tolerated(0.1) probably_damaging(0.998) TCGA-W3-AA1V-06 16 68721562 68721562 C T CDH3 Missense_Mutation p.S573F 0.22 deleterious(0.04) benign(0.001) TCGA-W3-AA1V-06 16 69776321 69776321 G A NOB1 Silent p.L385L 0.20 TCGA-W3-AA1V-06 16 69782896 69782896 G A NOB1 Silent p.I217I 0.23 TCGA-W3-AA1V-06 16 70400563 70400563 C T DDX19A Silent p.S273S 0.19 TCGA-W3-AA1V-06 16 70557296 70557296 C T COG4 Missense_Mutation p.E51K 0.57 tolerated(0.5) benign(0.01) TCGA-W3-AA1V-06 16 705608 705608 T C WDR90 Missense_Mutation p.I585T 0.20 deleterious(0) benign(0.255) TCGA-W3-AA1V-06 16 70796889 70796889 G A VAC14 Silent p.I400I 0.21 TCGA-W3-AA1V-06 16 70868002 70868002 G A HYDIN Silent p.V4489V 0.18 TCGA-W3-AA1V-06 16 70889118 70889118 G A HYDIN Missense_Mutation p.S4119F 0.79 benign(0.071) TCGA-W3-AA1V-06 16 70934996 70934996 C T HYDIN Missense_Mutation p.G2987R 0.09 probably_damaging(0.991) TCGA-W3-AA1V-06 16 71127754 71127754 C T HYDIN Missense_Mutation p.G471E 0.55 probably_damaging(0.998) TCGA-W3-AA1V-06 16 71196450 71196450 G A HYDIN Missense_Mutation p.H234Y 0.24 possibly_damaging(0.865) TCGA-W3-AA1V-06 16 71209621 71209621 C T HYDIN Silent p.V135V 0.12 TCGA-W3-AA1V-06 16 71212856 71212856 G A HYDIN Missense_Mutation p.P119L 0.62 probably_damaging(0.967) TCGA-W3-AA1V-06 16 71218785 71218785 C T HYDIN Missense_Mutation p.E82K 0.19 possibly_damaging(0.714) TCGA-W3-AA1V-06 16 71218807 71218807 G A HYDIN Silent p.I74I 0.19 TCGA-W3-AA1V-06 16 71319781 71319781 G A CMTR2 Missense_Mutation p.P15S 0.19 tolerated_low_confidence(0.46) benign(0.004) TCGA-W3-AA1V-06 16 71419537 71419537 G A CALB2 Missense_Mutation p.E229K 0.42 tolerated(0.05) possibly_damaging(0.64) TCGA-W3-AA1V-06 16 71482628 71482628 G A ZNF23 Nonsense_Mutation p.Q434* 0.30 TCGA-W3-AA1V-06 16 71482630 71482630 G T ZNF23 Missense_Mutation p.S433Y 0.31 deleterious(0.03) benign(0.062) TCGA-W3-AA1V-06 16 71483208 71483208 G A ZNF23 Silent p.I240I 0.41 TCGA-W3-AA1V-06 16 71571446 71571446 G A CHST4 Missense_Mutation p.R289Q 0.29 tolerated(0.77) benign(0.057) TCGA-W3-AA1V-06 16 71602066 71602066 T A TAT Missense_Mutation p.Q449L 0.19 tolerated(0.12) benign(0.001) TCGA-W3-AA1V-06 16 71697959 71697959 G A PHLPP2 Missense_Mutation p.P610S 0.41 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 16 72046001 72046001 C T DHODH Missense_Mutation p.A25V 0.17 tolerated(0.35) benign(0.005) TCGA-W3-AA1V-06 16 72094660 72094660 G A HP Silent p.L364L 0.17 TCGA-W3-AA1V-06 16 72130189 72130189 C A DHX38 Missense_Mutation p.R45S 0.58 deleterious(0.02) possibly_damaging(0.726) TCGA-W3-AA1V-06 16 72153729 72153729 T G PMFBP1 Intron 0.23 TCGA-W3-AA1V-06 16 72164148 72164148 C T PMFBP1 Missense_Mutation p.M582I 0.52 tolerated(0.64) benign(0.002) TCGA-W3-AA1V-06 16 72174358 72174358 C T PMFBP1 Missense_Mutation p.D254N 0.42 deleterious(0.02) probably_damaging(0.992) TCGA-W3-AA1V-06 16 72184630 72184630 G A PMFBP1 Silent p.I171I 0.19 TCGA-W3-AA1V-06 16 72831160 72831160 G A ZFHX3 Silent p.F1807F 0.54 TCGA-W3-AA1V-06 16 72923771 72923771 G A ZFHX3 Missense_Mutation p.L1103F 0.27 probably_damaging(0.994) TCGA-W3-AA1V-06 16 72992118 72992118 G A ZFHX3 Missense_Mutation p.P643S 0.21 probably_damaging(0.996) TCGA-W3-AA1V-06 16 72993386 72993386 G A ZFHX3 Missense_Mutation p.A220V 0.60 probably_damaging(0.935) TCGA-W3-AA1V-06 16 7382854 7382854 C T RBFOX1 5'UTR 0.27 TCGA-W3-AA1V-06 16 74339293 74339293 G A PSMD7 Missense_Mutation p.E213K 0.18 tolerated(0.42) benign(0.014) TCGA-W3-AA1V-06 16 746869 746869 C T FBXL16 Silent p.L179L 0.17 TCGA-W3-AA1V-06 16 75276776 75276776 G A BCAR1 Silent p.G121G 0.21 TCGA-W3-AA1V-06 16 75563246 75563246 C T CHST5 Missense_Mutation p.R346K 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 16 75563252 75563252 G A CHST5 Missense_Mutation p.S344L 0.38 deleterious(0.03) benign(0.329) TCGA-W3-AA1V-06 16 7629883 7629883 C T RBFOX1 Silent p.P145P 0.47 TCGA-W3-AA1V-06 16 76486439 76486439 C T CNTNAP4 Missense_Mutation p.S296F 0.10 tolerated(0.71) benign(0.285) TCGA-W3-AA1V-06 16 76486606 76486606 G A CNTNAP4 Missense_Mutation p.D352N 0.39 tolerated(0.23) possibly_damaging(0.558) TCGA-W3-AA1V-06 16 76501349 76501349 G A CNTNAP4 Silent p.L455L 0.49 TCGA-W3-AA1V-06 16 76501376 76501376 G A CNTNAP4 Silent p.G464G 0.57 TCGA-W3-AA1V-06 16 76569605 76569605 G A CNTNAP4 Silent p.G900G 0.72 TCGA-W3-AA1V-06 16 77323224 77323224 G A ADAMTS18 Missense_Mutation p.H1163Y 0.63 deleterious(0.04) benign(0.03) TCGA-W3-AA1V-06 16 77334280 77334280 G A ADAMTS18 Missense_Mutation p.P852S 0.71 deleterious(0.02) probably_damaging(0.969) TCGA-W3-AA1V-06 16 77401455 77401455 C T ADAMTS18 Missense_Mutation p.G221S 0.15 tolerated(1) benign(0) TCGA-W3-AA1V-06 16 77401520 77401520 G A ADAMTS18 Missense_Mutation p.P199L 0.23 deleterious(0) probably_damaging(0.98) TCGA-W3-AA1V-06 16 7760673 7760673 G A RBFOX1 Missense_Mutation p.D395N 0.58 tolerated_low_confidence(0.08) probably_damaging(0.996) TCGA-W3-AA1V-06 16 77918549 77918549 G A VAT1L Silent p.E309E 0.64 TCGA-W3-AA1V-06 16 78005795 78005795 T G VAT1L Missense_Mutation p.L376V 0.24 tolerated(1) benign(0.071) TCGA-W3-AA1V-06 16 78011552 78011552 G A VAT1L Missense_Mutation p.G407E 0.68 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-W3-AA1V-06 16 780367 780367 C T NARFL 3'UTR 0.23 TCGA-W3-AA1V-06 16 80646556 80646556 G A CDYL2 Silent p.S395S 0.18 TCGA-W3-AA1V-06 16 80666994 80666994 G A CDYL2 Silent p.I252I 0.68 TCGA-W3-AA1V-06 16 80718856 80718856 C T CDYL2 Silent p.R65R 0.44 TCGA-W3-AA1V-06 16 81087649 81087649 G A RP11-303E16.5 5'Flank 0.56 TCGA-W3-AA1V-06 16 81155299 81155299 C T PKD1L2 RNA 0.20 TCGA-W3-AA1V-06 16 81161395 81161395 G A PKD1L2 RNA 0.20 TCGA-W3-AA1V-06 16 81161396 81161396 G A PKD1L2 RNA 0.20 TCGA-W3-AA1V-06 16 81194429 81194429 C T PKD1L2 RNA 0.25 TCGA-W3-AA1V-06 16 81248667 81248667 G A PKD1L2 Missense_Mutation p.P199L 0.70 deleterious(0.01) possibly_damaging(0.904) TCGA-W3-AA1V-06 16 815025 815025 C T MSLN Silent p.L167L 0.19 TCGA-W3-AA1V-06 16 81969802 81969802 C T PLCG2 Silent p.S957S 0.16 TCGA-W3-AA1V-06 16 82032991 82032991 G A SDR42E1 Nonsense_Mutation p.R303* 0.18 TCGA-W3-AA1V-06 16 82033731 82033731 C T SDR42E1 Missense_Mutation p.G56E 0.45 deleterious(0.04) probably_damaging(0.982) TCGA-W3-AA1V-06 16 83636148 83636148 G A CDH13 Silent p.T397T 0.36 TCGA-W3-AA1V-06 16 83982968 83982968 G A OSGIN1 5'UTR 0.23 TCGA-W3-AA1V-06 16 84216688 84216688 G A TAF1C Missense_Mutation p.P159L 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-W3-AA1V-06 16 84270666 84270666 G A KCNG4 Silent p.S142S 0.24 TCGA-W3-AA1V-06 16 84449146 84449146 C T ATP2C2 Silent p.V191V 0.56 TCGA-W3-AA1V-06 16 84513612 84513612 G A TLDC1 Silent p.I426I 0.21 TCGA-W3-AA1V-06 16 84520383 84520383 G A TLDC1 Missense_Mutation p.S271L 0.22 deleterious(0) possibly_damaging(0.701) TCGA-W3-AA1V-06 16 84940291 84940291 C T CRISPLD2 3'UTR 0.41 TCGA-W3-AA1V-06 16 85936666 85936666 C T IRF8 Silent p.I15I 0.62 TCGA-W3-AA1V-06 16 85952206 85952206 G A IRF8 Missense_Mutation p.R262Q 0.69 tolerated(0.1) probably_damaging(0.997) TCGA-W3-AA1V-06 16 86544452 86544452 A C FOXF1 Missense_Mutation p.K93Q 0.38 tolerated(0.17) probably_damaging(0.996) TCGA-W3-AA1V-06 16 86546616 86546616 C T FOXF1 Silent p.S355S 0.66 TCGA-W3-AA1V-06 16 86585719 86585719 G A MTHFSD Silent p.L53L 0.38 TCGA-W3-AA1V-06 16 86585720 86585720 G A MTHFSD Silent p.D52D 0.39 TCGA-W3-AA1V-06 16 87678579 87678579 C A JPH3 Silent p.A366A 0.32 TCGA-W3-AA1V-06 16 87717805 87717805 G A JPH3 Silent p.Q406Q 0.69 TCGA-W3-AA1V-06 16 87744974 87744974 G A KLHDC4 Missense_Mutation p.A304V 0.62 tolerated(0.13) possibly_damaging(0.507) TCGA-W3-AA1V-06 16 88052066 88052066 G A BANP Missense_Mutation p.E222K 0.25 deleterious(0.01) probably_damaging(0.955) TCGA-W3-AA1V-06 16 88643632 88643632 C T ZC3H18 Missense_Mutation p.S34F 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-W3-AA1V-06 16 89349138 89349138 G C ANKRD11 Missense_Mutation p.S1271W 0.47 probably_damaging(0.937) TCGA-W3-AA1V-06 16 89349345 89349345 A C ANKRD11 Missense_Mutation p.F1202C 0.23 probably_damaging(0.948) TCGA-W3-AA1V-06 16 89656316 89656316 T A CPNE7 Missense_Mutation p.F433Y 0.13 deleterious(0.02) probably_damaging(0.965) TCGA-W3-AA1V-06 16 89657415 89657415 G A CPNE7 Missense_Mutation p.V448M 0.09 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 16 89696758 89696758 C T DPEP1 5'UTR 0.56 TCGA-W3-AA1V-06 16 89858359 89858359 G A FANCA Missense_Mutation p.P401S 0.23 deleterious(0.03) benign(0) TCGA-W3-AA1V-06 16 89865566 89865566 G A FANCA Intron 0.20 TCGA-W3-AA1V-06 16 89924798 89924798 C T SPIRE2 Silent p.S385S 0.20 TCGA-W3-AA1V-06 16 90124922 90124922 G A PRDM7 Silent p.I418I 0.14 TCGA-W3-AA1V-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.45 tolerated(0.37) benign(0.005) TCGA-W3-AA1V-06 16 9858587 9858587 C T GRIN2A Silent p.K938K 0.24 TCGA-W3-AA1V-06 16 9943693 9943693 G A GRIN2A Silent p.F416F 0.57 TCGA-W3-AA1V-06 17 10223517 10223517 C T MYH13 Missense_Mutation p.E1101K 0.16 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 17 10243679 10243679 C T MYH13 Missense_Mutation p.G645D 0.15 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 17 10267741 10267741 T A MYH13 Missense_Mutation p.K36I 0.24 deleterious(0.02) benign(0.002) TCGA-W3-AA1V-06 17 10296494 10296494 C T MYH8 Missense_Mutation p.E1734K 0.25 deleterious(0) possibly_damaging(0.452) TCGA-W3-AA1V-06 17 10298665 10298665 C T MYH8 Missense_Mutation p.D1583N 0.32 tolerated(0.06) probably_damaging(0.936) TCGA-W3-AA1V-06 17 10309458 10309458 C T MYH8 Missense_Mutation p.E778K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 17 10312851 10312851 C T MYH8 Missense_Mutation p.D548N 0.31 deleterious(0.02) possibly_damaging(0.765) TCGA-W3-AA1V-06 17 10322210 10322210 C T MYH8 Missense_Mutation p.M116I 0.25 deleterious(0.05) benign(0.354) TCGA-W3-AA1V-06 17 10348395 10348395 C T MYH4 Silent p.K1788K 0.20 TCGA-W3-AA1V-06 17 10351746 10351746 C T MYH4 Silent p.K1541K 0.15 TCGA-W3-AA1V-06 17 10358971 10358971 C T MYH4 Missense_Mutation p.G712S 0.19 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 17 10398588 10398588 G A MYH1 Missense_Mutation p.S1739F 0.45 deleterious(0.04) possibly_damaging(0.466) TCGA-W3-AA1V-06 17 10401063 10401063 C T MYH1 Silent p.R1451R 0.27 TCGA-W3-AA1V-06 17 10402381 10402381 C T MYH1 Silent p.K1298K 0.20 TCGA-W3-AA1V-06 17 10415482 10415482 T A MYH1 Missense_Mutation p.N392I 0.26 deleterious(0) benign(0.051) TCGA-W3-AA1V-06 17 10419551 10419551 T C MYH1 Missense_Mutation p.N105D 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 10419907 10419907 C T MYH1 Missense_Mutation p.R18Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 17 10426982 10426982 G A MYH2 Missense_Mutation p.A1768V 0.55 deleterious(0.04) benign(0.219) TCGA-W3-AA1V-06 17 10427986 10427986 C T MYH2 Missense_Mutation p.D1658N 0.22 deleterious(0) benign(0.396) TCGA-W3-AA1V-06 17 10432154 10432154 C T MYH2 Silent p.R1199R 0.28 TCGA-W3-AA1V-06 17 10433391 10433391 C T MYH2 Missense_Mutation p.E900K 0.25 deleterious(0) possibly_damaging(0.493) TCGA-W3-AA1V-06 17 10435088 10435088 C T MYH2 Silent p.K853K 0.20 TCGA-W3-AA1V-06 17 10436617 10436617 C T MYH2 Missense_Mutation p.R809K 0.18 tolerated(1) benign(0) TCGA-W3-AA1V-06 17 10436869 10436869 G A MYH2 Missense_Mutation p.S754F 0.50 deleterious(0.03) probably_damaging(0.991) TCGA-W3-AA1V-06 17 10441078 10441078 G A MYH2 Silent p.F497F 0.54 TCGA-W3-AA1V-06 17 10538235 10538235 C T MYH3 Silent p.V1426V 0.23 TCGA-W3-AA1V-06 17 10542281 10542281 C T MYH3 Splice_Site p.X1083_splice 0.23 TCGA-W3-AA1V-06 17 10542883 10542883 C T MYH3 Silent p.E973E 0.27 TCGA-W3-AA1V-06 17 10546008 10546008 C T MYH3 Silent p.E538E 0.25 TCGA-W3-AA1V-06 17 10554863 10554863 G A MYH3 Silent p.S157S 0.21 TCGA-W3-AA1V-06 17 10608559 10608559 C T ADPRM Missense_Mutation p.H106Y 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 11554563 11554563 C T DNAH9 Missense_Mutation p.P759S 0.24 possibly_damaging(0.739) TCGA-W3-AA1V-06 17 11648169 11648169 C T DNAH9 Missense_Mutation p.S2056F 0.34 probably_damaging(0.951) TCGA-W3-AA1V-06 17 11726312 11726312 G A DNAH9 Silent p.L3069L 0.74 TCGA-W3-AA1V-06 17 12639553 12639553 C T MYOCD Missense_Mutation p.P164L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 12656014 12656014 C T MYOCD Missense_Mutation p.S470F 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 12883400 12883400 C T ARHGAP44 Missense_Mutation p.P597S 0.23 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 17 15501947 15501947 C T RP11-385D13.1 Missense_Mutation p.G795E 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1V-06 17 1576397 1576397 G A PRPF8 Missense_Mutation p.S1251F 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 1579798 1579830 CCTTCAGGTAGTTGTGCTGCCGCTCCTGTTCTG - PRPF8 Splice_Site p.X786_splice 0.19 TCGA-W3-AA1V-06 17 16470750 16470750 G A ZNF287 Missense_Mutation p.T99I 0.22 deleterious(0) benign(0.146) TCGA-W3-AA1V-06 17 16527181 16527181 G A ZNF624 Missense_Mutation p.A340V 0.35 deleterious(0.04) benign(0.371) TCGA-W3-AA1V-06 17 16593899 16593899 G A CCDC144A Missense_Mutation p.S62N 0.21 deleterious_low_confidence(0) benign(0.213) TCGA-W3-AA1V-06 17 1673306 1673306 C T SERPINF1 Missense_Mutation p.P82L 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 16734757 16734757 C T KRT16P2 RNA 0.08 TCGA-W3-AA1V-06 17 17131308 17131308 C T FLCN Silent p.E48E 0.17 TCGA-W3-AA1V-06 17 1747873 1747873 T G RPA1 Silent p.S55S 0.26 TCGA-W3-AA1V-06 17 18023384 18023384 C T MYO15A Missense_Mutation p.P424S 0.21 possibly_damaging(0.641) TCGA-W3-AA1V-06 17 18023648 18023648 G A MYO15A Missense_Mutation p.E512K 0.10 benign(0.305) TCGA-W3-AA1V-06 17 18082167 18082167 G C MYO15A Missense_Mutation p.E3526Q 0.17 unknown(0) TCGA-W3-AA1V-06 17 18143931 18143931 C T LLGL1 Missense_Mutation p.S749L 0.54 deleterious(0.02) possibly_damaging(0.843) TCGA-W3-AA1V-06 17 18233953 18233953 G A SHMT1 Missense_Mutation p.L363F 0.54 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 17 1839925 1839925 C T RTN4RL1 Silent p.R397R 0.36 TCGA-W3-AA1V-06 17 18891575 18891575 G A FAM83G Silent p.H225H 0.45 TCGA-W3-AA1V-06 17 19213219 19213219 C T EPN2 Missense_Mutation p.S263F 0.47 deleterious(0.01) possibly_damaging(0.62) TCGA-W3-AA1V-06 17 19216468 19216468 C T EPN2 Silent p.L341L 0.26 TCGA-W3-AA1V-06 17 19474867 19474867 G A SLC47A1 Nonsense_Mutation p.W462* 0.56 TCGA-W3-AA1V-06 17 19641490 19641490 C T ALDH3A1 3'UTR 0.30 TCGA-W3-AA1V-06 17 19699575 19699575 G A ULK2 Silent p.I610I 0.26 TCGA-W3-AA1V-06 17 20107819 20107819 A T SPECC1 Nonsense_Mutation p.K153* 0.20 TCGA-W3-AA1V-06 17 20796747 20796747 C T CCDC144NL Missense_Mutation p.E125K 0.38 tolerated_low_confidence(0.1) benign(0.351) TCGA-W3-AA1V-06 17 20805869 20805869 C T RP11-344E13.3 RNA 0.31 TCGA-W3-AA1V-06 17 20922432 20922432 G A USP22 Missense_Mutation p.P162L 0.26 deleterious(0.01) benign(0.28) TCGA-W3-AA1V-06 17 21206497 21206497 C T MAP2K3 Silent p.I173I 0.33 TCGA-W3-AA1V-06 17 2227976 2227976 T A TSR1 Intron 0.61 TCGA-W3-AA1V-06 17 2323707 2323707 A G METTL16 Missense_Mutation p.S416P 0.19 tolerated_low_confidence(0.34) benign(0) TCGA-W3-AA1V-06 17 25637097 25637097 C T WSB1 Missense_Mutation p.P299S 0.16 tolerated(0.62) probably_damaging(0.996) TCGA-W3-AA1V-06 17 263477 263477 C T C17orf97 Silent p.A281A 0.31 TCGA-W3-AA1V-06 17 26817540 26817540 G A SLC13A2 Silent p.V149V 0.19 TCGA-W3-AA1V-06 17 26824134 26824134 C T SLC13A2 Silent p.L591L 0.28 TCGA-W3-AA1V-06 17 26861978 26861978 C T FOXN1 Silent p.A463A 0.61 TCGA-W3-AA1V-06 17 27014390 27014390 C T SUPT6H Silent p.V969V 0.31 TCGA-W3-AA1V-06 17 27051859 27051859 C T TLCD1 Missense_Mutation p.G138D 0.26 deleterious(0) probably_damaging(0.926) TCGA-W3-AA1V-06 17 27068190 27068190 C T NEK8 Silent p.G609G 0.37 TCGA-W3-AA1V-06 17 27187544 27187544 C T ERAL1 Silent p.I429I 0.19 TCGA-W3-AA1V-06 17 27308641 27308641 C T SEZ6 Missense_Mutation p.G158R 0.33 deleterious(0.05) possibly_damaging(0.594) TCGA-W3-AA1V-06 17 27381659 27381659 C T PIPOX Missense_Mutation p.P253S 0.19 tolerated(0.18) benign(0.004) TCGA-W3-AA1V-06 17 27381660 27381660 C T PIPOX Missense_Mutation p.P253L 0.20 tolerated(0.09) benign(0.009) TCGA-W3-AA1V-06 17 27382857 27382857 C T PIPOX Silent p.L331L 0.22 TCGA-W3-AA1V-06 17 27493420 27493420 G A MYO18A Missense_Mutation p.P180L 0.51 tolerated_low_confidence(0.08) benign(0) TCGA-W3-AA1V-06 17 27493421 27493421 G A MYO18A Missense_Mutation p.P180S 0.54 tolerated_low_confidence(0.52) benign(0) TCGA-W3-AA1V-06 17 27613187 27613187 G A NUFIP2 Nonsense_Mutation p.Q609* 0.28 TCGA-W3-AA1V-06 17 27959278 27959278 A G SSH2 Silent p.N951N 0.30 TCGA-W3-AA1V-06 17 28417553 28417553 C T EFCAB5 Silent p.L1266L 0.51 TCGA-W3-AA1V-06 17 28419918 28419918 G A EFCAB5 Missense_Mutation p.E1429K 0.62 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 17 28849343 28849343 G A GOSR1 Missense_Mutation p.G234R 0.20 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1V-06 17 2923792 2923792 G A RAP1GAP2 Missense_Mutation p.V552M 0.20 tolerated(0.23) benign(0.104) TCGA-W3-AA1V-06 17 29533315 29533315 C T NF1 Nonsense_Mutation p.R440* 0.52 TCGA-W3-AA1V-06 17 29631997 29631997 G A EVI2B Missense_Mutation p.L211F 0.24 deleterious(0.02) benign(0.071) TCGA-W3-AA1V-06 17 29670026 29670026 G A NF1 Splice_Site p.X2355_splice 0.15 TCGA-W3-AA1V-06 17 29687682 29687682 A G NF1 Missense_Mutation p.N2780D 0.21 tolerated_low_confidence(0.05) probably_damaging(0.952) TCGA-W3-AA1V-06 17 29849062 29849062 C T RAB11FIP4 Silent p.A296A 0.18 TCGA-W3-AA1V-06 17 30200502 30200502 G A UTP6 Missense_Mutation p.A464V 0.24 deleterious(0.01) possibly_damaging(0.703) TCGA-W3-AA1V-06 17 30349259 30349259 C T LRRC37B Missense_Mutation p.A365V 0.23 tolerated(0.47) probably_damaging(0.97) TCGA-W3-AA1V-06 17 30615952 30615952 C T RHBDL3 Missense_Mutation p.R146W 0.22 deleterious(0.02) probably_damaging(0.973) TCGA-W3-AA1V-06 17 30986335 30986335 G C MYO1D Missense_Mutation p.R715G 0.33 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 17 31318931 31318931 C T SPACA3 5'UTR 0.23 TCGA-W3-AA1V-06 17 3144185 3144185 C T OR1D4 RNA 0.17 TCGA-W3-AA1V-06 17 3181213 3181213 G A OR3A2 3'UTR 0.37 TCGA-W3-AA1V-06 17 32614220 32614220 C T CCL11 Missense_Mutation p.A61V 0.15 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1V-06 17 32614666 32614666 C T CCL11 Missense_Mutation p.S84F 0.40 tolerated(0.58) benign(0.03) TCGA-W3-AA1V-06 17 32685154 32685154 C T CCL13 3'UTR 0.36 TCGA-W3-AA1V-06 17 32953985 32953985 C T TMEM132E Missense_Mutation p.L213F 0.23 deleterious(0) possibly_damaging(0.777) TCGA-W3-AA1V-06 17 33288553 33288553 G A ZNF830 5'UTR 0.20 TCGA-W3-AA1V-06 17 33348489 33348489 C T RFFL Silent p.Q164Q 0.32 TCGA-W3-AA1V-06 17 33456532 33456532 C T FNDC8 Missense_Mutation p.P226L 0.24 tolerated_low_confidence(0.07) benign(0.026) TCGA-W3-AA1V-06 17 33481638 33481638 G A UNC45B Missense_Mutation p.E173K 0.32 deleterious(0.03) possibly_damaging(0.459) TCGA-W3-AA1V-06 17 33690205 33690205 G A SLFN11 Missense_Mutation p.P208S 0.27 tolerated(0.38) benign(0.047) TCGA-W3-AA1V-06 17 33772415 33772415 G A SLFN13 Silent p.F95F 0.20 TCGA-W3-AA1V-06 17 33904282 33904282 C T PEX12 Nonsense_Mutation p.W152* 0.59 TCGA-W3-AA1V-06 17 3397739 3397739 C T ASPA Missense_Mutation p.H244Y 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 34072662 34072662 C T GAS2L2 Silent p.R618R 0.22 TCGA-W3-AA1V-06 17 34192239 34192239 C T C17orf66 Silent p.R100R 0.24 TCGA-W3-AA1V-06 17 34264901 34264901 C T LYZL6 Silent p.V53V 0.24 TCGA-W3-AA1V-06 17 34311487 34311487 C T CCL14 Silent p.G43G 0.26 TCGA-W3-AA1V-06 17 34311488 34311488 C T CCL14 Missense_Mutation p.G43E 0.26 tolerated(0.29) benign(0.034) TCGA-W3-AA1V-06 17 34313630 34313630 C T CCL14 Missense_Mutation p.G19E 0.22 tolerated(0.3) benign(0.158) TCGA-W3-AA1V-06 17 3477212 3477212 G A SHPK Silent p.S606S 0.16 TCGA-W3-AA1V-06 17 3495429 3495429 G A TRPV1 Silent p.S72S 0.28 TCGA-W3-AA1V-06 17 3518725 3518725 G A SHPK Silent p.F310F 0.52 TCGA-W3-AA1V-06 17 35921578 35921578 G A SYNRG Missense_Mutation p.P532L 0.18 tolerated_low_confidence(0.37) benign(0.001) TCGA-W3-AA1V-06 17 36099603 36099603 C T HNF1B Missense_Mutation p.M124I 0.36 deleterious(0.04) benign(0.098) TCGA-W3-AA1V-06 17 36288203 36288203 C T TBC1D3F Nonsense_Mutation p.R97* 0.24 TCGA-W3-AA1V-06 17 36484917 36484917 C T GPR179 Missense_Mutation p.G1512E 0.25 tolerated(0.26) benign(0.02) TCGA-W3-AA1V-06 17 36489873 36489873 G A GPR179 Silent p.F611F 0.28 TCGA-W3-AA1V-06 17 36491535 36491535 G A GPR179 Missense_Mutation p.R449C 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 3667225 3667225 C T ITGAE Missense_Mutation p.R62K 0.29 tolerated(0.43) benign(0.003) TCGA-W3-AA1V-06 17 36719146 36719146 C T SRCIN1 Missense_Mutation p.D251N 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 17 36719147 36719147 C T SRCIN1 Silent p.Q250Q 0.62 TCGA-W3-AA1V-06 17 36896563 36896563 G A PCGF2 Silent p.I31I 0.29 TCGA-W3-AA1V-06 17 36959106 36959106 G A CWC25 Missense_Mutation p.S337F 0.24 deleterious(0) possibly_damaging(0.486) TCGA-W3-AA1V-06 17 36991421 36991421 C T C17orf98 3'UTR 0.10 TCGA-W3-AA1V-06 17 36991593 36991593 G A C17orf98 Missense_Mutation p.S105F 0.28 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 17 37186446 37186446 G A CTD-2206N4.2 5'Flank 0.65 TCGA-W3-AA1V-06 17 37186572 37186572 C T CTD-2206N4.2 5'Flank 0.36 TCGA-W3-AA1V-06 17 37368551 37368551 C T STAC2 Silent p.E410E 0.35 TCGA-W3-AA1V-06 17 37676259 37676259 C T CDK12 Missense_Mutation p.P1005L 0.28 probably_damaging(1) TCGA-W3-AA1V-06 17 37792086 37792086 C A PPP1R1B Missense_Mutation p.Q195K 0.20 deleterious_low_confidence(0.02) benign(0.009) TCGA-W3-AA1V-06 17 37922369 37922369 G A IKZF3 Nonsense_Mutation p.Q402* 0.20 TCGA-W3-AA1V-06 17 38557238 38557238 G A TOP2A Missense_Mutation p.P843L 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 38634879 38634879 G A TNS4 Silent p.Y644Y 0.28 TCGA-W3-AA1V-06 17 38816350 38816350 C T KRT222 Missense_Mutation p.R112K 0.51 deleterious(0.01) benign(0.429) TCGA-W3-AA1V-06 17 38907533 38907533 C T KRT25 Missense_Mutation p.E239K 0.51 deleterious(0) possibly_damaging(0.803) TCGA-W3-AA1V-06 17 38935805 38935805 C T KRT27 Missense_Mutation p.M307I 0.30 deleterious(0.02) benign(0.012) TCGA-W3-AA1V-06 17 38978734 38978734 C T KRT10 Missense_Mutation p.R35K 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-W3-AA1V-06 17 39034482 39034482 C T KRT20 Missense_Mutation p.E352K 0.29 deleterious(0.01) probably_damaging(0.943) TCGA-W3-AA1V-06 17 39138586 39138586 G A KRT40 Silent p.L220L 0.22 TCGA-W3-AA1V-06 17 39506846 39506846 C T KRT33A Silent p.E58E 0.27 TCGA-W3-AA1V-06 17 39525934 39525934 G A KRT33B Silent p.P23P 0.35 TCGA-W3-AA1V-06 17 39580364 39580364 C T KRT37 Missense_Mutation p.E138K 0.54 deleterious(0) probably_damaging(0.945) TCGA-W3-AA1V-06 17 39580750 39580750 G A KRT37 Missense_Mutation p.S9L 0.32 deleterious(0.04) benign(0.057) TCGA-W3-AA1V-06 17 39616440 39616440 G A KRT32 Silent p.S423S 0.80 TCGA-W3-AA1V-06 17 39645863 39645863 C T KRT36 Missense_Mutation p.C85Y 0.61 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 17 39645864 39645864 A T KRT36 Missense_Mutation p.C85S 0.62 tolerated(0.48) benign(0.002) TCGA-W3-AA1V-06 17 39670261 39670261 C A KRT15 3'UTR 0.19 TCGA-W3-AA1V-06 17 39743045 39743045 C T KRT14 Missense_Mutation p.M14I 0.33 tolerated(0.39) unknown(0) TCGA-W3-AA1V-06 17 39767451 39767451 C T KRT16 Missense_Mutation p.G268E 0.28 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1V-06 17 39872112 39872112 G A GAST Silent p.E98E 0.29 TCGA-W3-AA1V-06 17 39919541 39919541 C T JUP Silent p.V397V 0.34 TCGA-W3-AA1V-06 17 40323901 40323901 G A KCNH4 Missense_Mutation p.S367L 0.36 tolerated(0.22) benign(0.091) TCGA-W3-AA1V-06 17 40344926 40344926 G A GHDC Nonsense_Mutation p.Q129* 0.21 TCGA-W3-AA1V-06 17 40474368 40474368 G A STAT3 Missense_Mutation p.P678L 0.64 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1V-06 17 40474369 40474369 G A STAT3 Missense_Mutation p.P678S 0.64 deleterious(0.02) probably_damaging(0.937) TCGA-W3-AA1V-06 17 40817814 40817814 C T TUBG2 Missense_Mutation p.T271I 0.28 deleterious(0.02) benign(0.348) TCGA-W3-AA1V-06 17 40950543 40950543 G A COA3 Missense_Mutation p.R53W 0.79 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1V-06 17 40993563 40993563 C - PSME3 Frame_Shift_Del p.R259Gfs*33 0.21 TCGA-W3-AA1V-06 17 41008396 41008396 C T AOC3 Silent p.P707P 0.21 TCGA-W3-AA1V-06 17 41020506 41020506 C T AOC4P RNA 0.27 TCGA-W3-AA1V-06 17 41059644 41059644 C T G6PC Missense_Mutation p.R149W 0.17 tolerated(0.46) benign(0.001) TCGA-W3-AA1V-06 17 41061405 41061405 C T G6PC Missense_Mutation p.P178S 0.24 deleterious(0) benign(0.121) TCGA-W3-AA1V-06 17 41063393 41063393 C T G6PC Missense_Mutation p.P342S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 41955175 41955175 T C MPP2 Nonstop_Mutation p.*553Wext*12 0.16 TCGA-W3-AA1V-06 17 41960366 41960366 G A MPP2 Missense_Mutation p.P120S 0.48 tolerated(0.32) benign(0.314) TCGA-W3-AA1V-06 17 42194967 42194967 G A HDAC5 5'UTR 0.27 TCGA-W3-AA1V-06 17 42255643 42255643 G A ASB16 Missense_Mutation p.R416Q 0.33 deleterious(0) possibly_damaging(0.643) TCGA-W3-AA1V-06 17 42338150 42338150 C T SLC4A1 Missense_Mutation p.E68K 0.62 tolerated(0.38) benign(0) TCGA-W3-AA1V-06 17 42390584 42390584 C T RUNDC3A Silent p.I112I 0.27 TCGA-W3-AA1V-06 17 42937885 42937885 G A EFTUD2 Missense_Mutation p.P545L 0.24 deleterious(0.01) possibly_damaging(0.864) TCGA-W3-AA1V-06 17 43012651 43012651 G A KIF18B Silent p.F149F 0.33 TCGA-W3-AA1V-06 17 43348578 43348578 G A MAP3K14-AS1 3'Flank 0.19 TCGA-W3-AA1V-06 17 43907795 43907795 T C CRHR1 Silent p.L219L 0.35 TCGA-W3-AA1V-06 17 43922557 43922557 G A SPPL2C Missense_Mutation p.M95I 0.26 deleterious(0.01) possibly_damaging(0.563) TCGA-W3-AA1V-06 17 43923611 43923611 G A SPPL2C Missense_Mutation p.G447S 0.26 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 17 44060850 44060850 C T MAPT Missense_Mutation p.S227F 0.69 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 44060851 44060851 C T MAPT Silent p.S227S 0.69 TCGA-W3-AA1V-06 17 4442852 4442852 G A MYBBP1A Missense_Mutation p.P1282L 0.26 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-W3-AA1V-06 17 44626442 44626442 C T LRRC37A2 Missense_Mutation p.H1313Y 0.25 deleterious(0.03) benign(0.029) TCGA-W3-AA1V-06 17 44845943 44845943 C T WNT3 Missense_Mutation p.E271K 0.41 tolerated(0.5) benign(0.023) TCGA-W3-AA1V-06 17 45286906 45286906 G T MYL4 Missense_Mutation p.D40Y 0.24 deleterious(0) probably_damaging(0.977) TCGA-W3-AA1V-06 17 45369772 45369772 G A ITGB3 Missense_Mutation p.D510N 0.21 tolerated(0.44) possibly_damaging(0.578) TCGA-W3-AA1V-06 17 45757934 45757934 C T KPNB1 Silent p.I843I 0.25 TCGA-W3-AA1V-06 17 45914380 45914380 G A LRRC46 Missense_Mutation p.S287N 0.15 tolerated(0.11) benign(0.002) TCGA-W3-AA1V-06 17 45925406 45925406 C T SP6 Missense_Mutation p.M130I 0.47 tolerated(0.56) benign(0.004) TCGA-W3-AA1V-06 17 46196403 46196403 G A SNX11 Missense_Mutation p.V132M 0.49 deleterious(0.05) possibly_damaging(0.822) TCGA-W3-AA1V-06 17 46214519 46214519 T C SKAP1 Intron 0.55 TCGA-W3-AA1V-06 17 46262129 46262129 C T SKAP1 Missense_Mutation p.E175K 0.29 tolerated(0.09) benign(0.028) TCGA-W3-AA1V-06 17 4636533 4636533 G A MED11 3'UTR 0.50 TCGA-W3-AA1V-06 17 46865189 46865189 G A TTLL6 Missense_Mutation p.R525W 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 47075151 47075151 C T IGF2BP1 Missense_Mutation p.P15L 0.24 tolerated(0.3) benign(0.014) TCGA-W3-AA1V-06 17 47123257 47123257 G A IGF2BP1 Silent p.Q467Q 0.10 TCGA-W3-AA1V-06 17 4712419 4712419 C T PLD2 Silent p.A136A 0.28 TCGA-W3-AA1V-06 17 47126782 47126782 C T IGF2BP1 Silent p.N570N 0.58 TCGA-W3-AA1V-06 17 47219534 47219534 G A B4GALNT2 Missense_Mutation p.R178K 0.27 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1V-06 17 47246140 47246140 A C B4GALNT2 Missense_Mutation p.Q458P 0.43 deleterious(0.02) possibly_damaging(0.79) TCGA-W3-AA1V-06 17 47788682 47788682 C T FAM117A Missense_Mutation p.E433K 0.44 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-W3-AA1V-06 17 47921445 47921445 C T TAC4 Silent p.L66L 0.26 TCGA-W3-AA1V-06 17 4799490 4799490 C T MINK1 Silent p.S1156S 0.29 TCGA-W3-AA1V-06 17 48155639 48155639 C T ITGA3 Missense_Mutation p.S763L 0.25 tolerated(0.05) possibly_damaging(0.796) TCGA-W3-AA1V-06 17 48598720 48598720 C T MYCBPAP Missense_Mutation p.S402L 0.67 deleterious(0.03) benign(0.123) TCGA-W3-AA1V-06 17 48606514 48606514 G A MYCBPAP Missense_Mutation p.V940I 0.61 tolerated(0.12) benign(0.253) TCGA-W3-AA1V-06 17 48626667 48626667 C T SPATA20 Silent p.T227T 0.20 TCGA-W3-AA1V-06 17 48649393 48649393 C T CACNA1G Silent p.F247F 0.35 TCGA-W3-AA1V-06 17 48701861 48701861 C T CACNA1G Missense_Mutation p.P2124S 0.64 tolerated(0.06) probably_damaging(0.987) TCGA-W3-AA1V-06 17 48704169 48704169 C T CACNA1G 3'UTR 0.51 TCGA-W3-AA1V-06 17 48745238 48745238 C T ABCC3 Silent p.T550T 0.12 TCGA-W3-AA1V-06 17 48753399 48753399 G A ABCC3 Silent p.Q1005Q 0.24 TCGA-W3-AA1V-06 17 48761348 48761348 C T ABCC3 Silent p.S1331S 0.50 TCGA-W3-AA1V-06 17 48765026 48765026 C T ABCC3 Silent p.T1470T 0.25 TCGA-W3-AA1V-06 17 4883855 4883855 C T CAMTA2 Silent p.V277V 0.64 TCGA-W3-AA1V-06 17 48917850 48917850 C T WFIKKN2 Missense_Mutation p.R401C 0.21 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 17 48918143 48918143 C T WFIKKN2 Silent p.F498F 0.21 TCGA-W3-AA1V-06 17 48918393 48918393 C T WFIKKN2 3'UTR 0.22 TCGA-W3-AA1V-06 17 4926878 4926878 C G KIF1C Missense_Mutation p.S915W 0.25 deleterious_low_confidence(0) benign(0.286) TCGA-W3-AA1V-06 17 49708859 49708859 G A CA10 3'UTR 0.44 TCGA-W3-AA1V-06 17 4995979 4995979 G A ZFP3 Missense_Mutation p.E394K 0.25 tolerated(0.92) benign(0.381) TCGA-W3-AA1V-06 17 50008440 50008440 C T CA10 Silent p.G63G 0.26 TCGA-W3-AA1V-06 17 5009278 5009278 A T ZNF232 Nonsense_Mutation p.C392* 0.18 TCGA-W3-AA1V-06 17 5051877 5051877 G A USP6 Missense_Mutation p.G820R 0.24 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-W3-AA1V-06 17 5051978 5051978 C T USP6 Silent p.F853F 0.15 TCGA-W3-AA1V-06 17 5076127 5076127 G A USP6 Missense_Mutation p.D1359N 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.905) TCGA-W3-AA1V-06 17 5138007 5138007 C T SCIMP Intron 0.56 TCGA-W3-AA1V-06 17 51900820 51900820 G A KIF2B Missense_Mutation p.M142I 0.31 tolerated(0.47) benign(0.073) TCGA-W3-AA1V-06 17 51901523 51901523 C T KIF2B Missense_Mutation p.L377F 0.53 deleterious(0.02) benign(0.376) TCGA-W3-AA1V-06 17 51902434 51902434 C T KIF2B 3'UTR 0.43 TCGA-W3-AA1V-06 17 53345219 53345219 C T HLF Missense_Mutation p.P75S 0.21 deleterious(0.02) benign(0.139) TCGA-W3-AA1V-06 17 53345221 53345221 C T HLF Silent p.P75P 0.24 TCGA-W3-AA1V-06 17 54517693 54517693 T A ANKFN1 Missense_Mutation p.W309R 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 54526444 54526444 G A ANKFN1 Nonsense_Mutation p.W371* 0.19 TCGA-W3-AA1V-06 17 5462558 5462558 C T NLRP1 Silent p.R486R 0.24 TCGA-W3-AA1V-06 17 5463084 5463084 A T NLRP1 Nonsense_Mutation p.L311* 0.23 TCGA-W3-AA1V-06 17 54671756 54671756 G A NOG Missense_Mutation p.E58K 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1V-06 17 54926582 54926582 A T DGKE Nonsense_Mutation p.R363* 0.56 TCGA-W3-AA1V-06 17 54926583 54926583 G A DGKE Missense_Mutation p.R363K 0.56 tolerated(0.13) benign(0.427) TCGA-W3-AA1V-06 17 55182999 55182999 C A AKAP1 Silent p.L58L 0.70 TCGA-W3-AA1V-06 17 56232818 56232818 T C OR4D1 Missense_Mutation p.F102L 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 17 56233396 56233396 G A OR4D1 Missense_Mutation p.M294I 0.45 deleterious(0.05) benign(0.011) TCGA-W3-AA1V-06 17 56345349 56345349 G A LPO Silent p.K711K 0.36 TCGA-W3-AA1V-06 17 56386636 56386636 G A BZRAP1 Missense_Mutation p.P1333S 0.60 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 56389372 56389372 G A BZRAP1 Missense_Mutation p.P937L 0.44 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 56389999 56389999 G A BZRAP1 Missense_Mutation p.P728L 0.24 deleterious(0) benign(0.161) TCGA-W3-AA1V-06 17 56390000 56390000 G A BZRAP1 Missense_Mutation p.P728S 0.24 deleterious(0.02) benign(0.186) TCGA-W3-AA1V-06 17 56787259 56787259 C T RAD51C Missense_Mutation p.R249C 0.37 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 17 57290134 57290134 C T SMG8 Silent p.F650F 0.30 TCGA-W3-AA1V-06 17 57758835 57758835 T C CLTC Missense_Mutation p.V1082A 0.38 tolerated(0.22) possibly_damaging(0.488) TCGA-W3-AA1V-06 17 58286883 58286883 G A USP32 Missense_Mutation p.P816S 0.30 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 17 59479312 59479312 C T TBX2 Silent p.F221F 0.21 TCGA-W3-AA1V-06 17 59878771 59878771 A G BRIP1 Missense_Mutation p.F328S 0.36 tolerated(0.31) benign(0.098) TCGA-W3-AA1V-06 17 5998442 5998442 G A WSCD1 Missense_Mutation p.G250R 0.09 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 60003783 60003783 A T INTS2 Missense_Mutation p.S83T 0.33 deleterious(0.02) benign(0.438) TCGA-W3-AA1V-06 17 60088374 60088374 G A MED13 Missense_Mutation p.P502S 0.62 tolerated(0.76) benign(0.005) TCGA-W3-AA1V-06 17 60342314 60342314 G A TBC1D3P2 3'Flank 0.22 TCGA-W3-AA1V-06 17 60749141 60749141 C T MRC2 Silent p.L417L 0.33 TCGA-W3-AA1V-06 17 60765935 60765935 C T MRC2 Silent p.F1045F 0.43 TCGA-W3-AA1V-06 17 60779047 60779047 C T MARCH10 3'UTR 0.41 TCGA-W3-AA1V-06 17 60799851 60799851 G A MARCH10 Nonsense_Mutation p.Q738* 0.75 TCGA-W3-AA1V-06 17 60813319 60813319 G A MARCH10 Missense_Mutation p.P637L 0.34 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1V-06 17 60813320 60813320 G A MARCH10 Missense_Mutation p.P637S 0.33 deleterious(0.02) benign(0.382) TCGA-W3-AA1V-06 17 61498451 61498451 C T TANC2 Missense_Mutation p.S1703L 0.33 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-W3-AA1V-06 17 61557816 61557816 C T ACE Silent p.V258V 0.38 TCGA-W3-AA1V-06 17 61621669 61621669 G A KCNH6 Missense_Mutation p.E801K 0.32 tolerated_low_confidence(0.26) benign(0) TCGA-W3-AA1V-06 17 61972697 61972697 C T CSH1 Intron 0.45 TCGA-W3-AA1V-06 17 61987634 61987634 G A CSHL1 Missense_Mutation p.P120L 0.14 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 61987913 61987913 C T CSHL1 Intron 0.27 TCGA-W3-AA1V-06 17 62007549 62007549 G A CD79B Silent p.A106A 0.27 TCGA-W3-AA1V-06 17 62007550 62007550 G A CD79B Missense_Mutation p.A106V 0.27 tolerated(0.51) benign(0.049) TCGA-W3-AA1V-06 17 62036769 62036769 C A SCN4A Missense_Mutation p.M625I 0.57 deleterious(0) possibly_damaging(0.819) TCGA-W3-AA1V-06 17 62291165 62291165 G A TEX2 Missense_Mutation p.S138L 0.30 tolerated(0.11) benign(0.003) TCGA-W3-AA1V-06 17 62461615 62461615 C T MILR1 Silent p.A16A 0.60 TCGA-W3-AA1V-06 17 62496008 62496008 G A DDX5 3'UTR 0.25 TCGA-W3-AA1V-06 17 62547742 62547742 G A SMURF2 Missense_Mutation p.P610L 0.32 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 17 62557655 62557655 G A SMURF2 Missense_Mutation p.R427C 0.42 deleterious(0) possibly_damaging(0.817) TCGA-W3-AA1V-06 17 62818059 62818059 G A RNU7-115P 3'Flank 0.32 TCGA-W3-AA1V-06 17 62855815 62855815 G A LRRC37A3 Silent p.S1483S 0.30 TCGA-W3-AA1V-06 17 62856970 62856970 G A LRRC37A3 Silent p.I1098I 0.42 TCGA-W3-AA1V-06 17 62892961 62892961 G A LRRC37A3 Missense_Mutation p.P139S 0.21 tolerated(0.15) benign(0.004) TCGA-W3-AA1V-06 17 63159175 63159175 C T RGS9 Silent p.D156D 0.31 TCGA-W3-AA1V-06 17 63173870 63173870 G A RGS9 Silent p.L201L 0.32 TCGA-W3-AA1V-06 17 6330295 6330295 C T AIPL1 Missense_Mutation p.G183E 0.30 tolerated(1) probably_damaging(0.944) TCGA-W3-AA1V-06 17 6351051 6351051 C T FAM64A Missense_Mutation p.S188F 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 6352680 6352680 C T FAM64A Silent p.L213L 0.33 TCGA-W3-AA1V-06 17 6367579 6367579 C T PITPNM3 Silent p.E689E 0.23 TCGA-W3-AA1V-06 17 6381876 6381876 G A PITPNM3 Silent p.F256F 0.17 TCGA-W3-AA1V-06 17 6386980 6386980 G A PITPNM3 Silent p.S148S 0.23 TCGA-W3-AA1V-06 17 64734896 64734896 C T PRKCA Silent p.F415F 0.25 TCGA-W3-AA1V-06 17 6502622 6502622 C T KIAA0753 Missense_Mutation p.E703K 0.53 tolerated(0.08) benign(0.001) TCGA-W3-AA1V-06 17 65040890 65040890 C T CACNG1 Silent p.H38H 0.38 TCGA-W3-AA1V-06 17 6511756 6511756 G A KIAA0753 Missense_Mutation p.P581S 0.24 tolerated(0.13) benign(0.01) TCGA-W3-AA1V-06 17 6607234 6607234 C T SLC13A5 Silent p.L170L 0.20 TCGA-W3-AA1V-06 17 66126463 66126463 C T LRRC37A16P Intron 0.32 TCGA-W3-AA1V-06 17 66247224 66247224 C T AMZ2 Missense_Mutation p.P164L 0.35 deleterious(0) possibly_damaging(0.852) TCGA-W3-AA1V-06 17 67028353 67028353 T G ABCA9 Silent p.G447G 0.25 TCGA-W3-AA1V-06 17 67041324 67041324 C T ABCA9 Missense_Mutation p.R153K 0.31 tolerated(0.34) benign(0.004) TCGA-W3-AA1V-06 17 67210909 67210909 G A ABCA10 Silent p.F314F 0.24 TCGA-W3-AA1V-06 17 67513679 67513679 G A MAP2K6 Missense_Mutation p.M57I 0.42 tolerated(0.05) benign(0.002) TCGA-W3-AA1V-06 17 68129488 68129488 C T KCNJ16 3'UTR 0.32 TCGA-W3-AA1V-06 17 68171456 68171456 C T KCNJ2 Silent p.F92F 0.33 TCGA-W3-AA1V-06 17 6939637 6939637 G A SLC16A13 5'UTR 0.43 TCGA-W3-AA1V-06 17 6980064 6980064 C T CLEC10A Missense_Mutation p.E114K 0.20 tolerated(0.17) probably_damaging(0.912) TCGA-W3-AA1V-06 17 70120252 70120252 C T SOX9 Silent p.I418I 0.37 TCGA-W3-AA1V-06 17 7107109 7107109 G A DLG4 Silent p.I122I 0.51 TCGA-W3-AA1V-06 17 71357853 71357853 C T SDK2 Missense_Mutation p.E1813K 0.36 tolerated(0.07) possibly_damaging(0.707) TCGA-W3-AA1V-06 17 71415383 71415383 G A SDK2 Missense_Mutation p.T703I 0.37 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1V-06 17 71420121 71420121 C T SDK2 Missense_Mutation p.G565D 0.33 deleterious(0) probably_damaging(0.955) TCGA-W3-AA1V-06 17 7186843 7186843 G A SLC2A4 Missense_Mutation p.G68R 0.48 tolerated(0.52) benign(0.002) TCGA-W3-AA1V-06 17 7186844 7186844 G A SLC2A4 Missense_Mutation p.G68E 0.48 tolerated(1) benign(0.006) TCGA-W3-AA1V-06 17 7187612 7187612 T G SLC2A4 Missense_Mutation p.L214R 0.29 deleterious(0) benign(0.091) TCGA-W3-AA1V-06 17 7192934 7192934 C T YBX2 Missense_Mutation p.R320Q 0.69 deleterious_low_confidence(0.01) benign(0.238) TCGA-W3-AA1V-06 17 7228216 7228216 T C NEURL4 Missense_Mutation p.K572R 0.25 tolerated(0.44) probably_damaging(0.955) TCGA-W3-AA1V-06 17 72351374 72351374 C T KIF19 Nonsense_Mutation p.R974* 0.25 TCGA-W3-AA1V-06 17 72363881 72363881 C T GPR142 Silent p.F79F 0.22 TCGA-W3-AA1V-06 17 72368094 72368094 C T GPR142 Silent p.I248I 0.35 TCGA-W3-AA1V-06 17 7246867 7246867 G A ACAP1 Missense_Mutation p.D172N 0.15 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 17 72470746 72470746 C T CD300A Missense_Mutation p.S152L 0.26 tolerated(0.52) benign(0.003) TCGA-W3-AA1V-06 17 72584866 72584866 C T CD300LD Missense_Mutation p.G55R 0.28 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 17 72588466 72588466 C T C17orf77 Missense_Mutation p.S94F 0.52 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-W3-AA1V-06 17 72613449 72613449 C T CD300E Missense_Mutation p.G66R 0.29 deleterious(0.04) possibly_damaging(0.546) TCGA-W3-AA1V-06 17 72846416 72846416 C T GRIN2C Missense_Mutation p.D474N 0.30 deleterious(0.03) probably_damaging(0.964) TCGA-W3-AA1V-06 17 72943354 72943354 C T OTOP3 Silent p.I468I 0.33 TCGA-W3-AA1V-06 17 72955984 72955984 G A HID1 Missense_Mutation p.R334C 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 7296178 7296178 G A TMEM256-PLSCR3 Missense_Mutation p.R201C 0.29 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 17 73043641 73043641 G A KCTD2 Missense_Mutation p.C99Y 0.29 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 17 73235534 73235534 G A GGA3 Nonsense_Mutation p.Q568* 0.18 TCGA-W3-AA1V-06 17 7324742 7324742 G A SPEM1 Missense_Mutation p.E250K 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-W3-AA1V-06 17 7330247 7330247 C T C17orf74 Nonsense_Mutation p.Q313* 0.32 TCGA-W3-AA1V-06 17 7350930 7350930 G A CHRNB1 Missense_Mutation p.G191R 0.33 tolerated(0.16) benign(0.063) TCGA-W3-AA1V-06 17 73555445 73555445 C T LLGL2 Missense_Mutation p.R162C 0.13 deleterious(0.03) benign(0.008) TCGA-W3-AA1V-06 17 73658926 73658926 G A RECQL5 Missense_Mutation p.S135L 0.26 deleterious(0) possibly_damaging(0.672) TCGA-W3-AA1V-06 17 73836862 73836862 C T UNC13D Missense_Mutation p.D222N 0.23 tolerated(0.41) benign(0.012) TCGA-W3-AA1V-06 17 7385595 7385595 C T SLC35G6 Missense_Mutation p.P98S 0.42 tolerated(0.16) possibly_damaging(0.755) TCGA-W3-AA1V-06 17 73921449 73921449 T A FBF1 Missense_Mutation p.Q302L 0.17 tolerated(0.12) benign(0.145) TCGA-W3-AA1V-06 17 73997499 73997499 C T CDK3 5'UTR 0.19 TCGA-W3-AA1V-06 17 74023317 74023317 C T EVPL 5'UTR 0.11 TCGA-W3-AA1V-06 17 74044044 74044044 C T SRP68 Missense_Mutation p.R362K 0.30 tolerated(0.75) benign(0.002) TCGA-W3-AA1V-06 17 7406776 7406776 C T POLR2A Missense_Mutation p.P1001S 0.20 possibly_damaging(0.474) TCGA-W3-AA1V-06 17 7416474 7416474 C T POLR2A Missense_Mutation p.P1631S 0.26 benign(0.002) TCGA-W3-AA1V-06 17 7416475 7416475 C T POLR2A Missense_Mutation p.P1631L 0.26 benign(0.049) TCGA-W3-AA1V-06 17 7416797 7416797 C T POLR2A Silent p.S1738S 0.26 TCGA-W3-AA1V-06 17 74288131 74288131 G A QRICH2 Nonsense_Mutation p.Q727* 0.24 TCGA-W3-AA1V-06 17 74395925 74395925 G A UBE2O Silent p.S411S 0.53 TCGA-W3-AA1V-06 17 7467002 7467002 C T SENP3 Silent p.L203L 0.32 TCGA-W3-AA1V-06 17 74734390 74734390 G A RP11-318A15.7 Missense_Mutation p.E89K 0.21 tolerated_low_confidence(0.18) benign(0.074) TCGA-W3-AA1V-06 17 7535219 7535219 G A SHBG Silent p.E246E 0.29 TCGA-W3-AA1V-06 17 7536605 7536605 A T SHBG Missense_Mutation p.S382C 0.19 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.55 TCGA-W3-AA1V-06 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.30 TCGA-W3-AA1V-06 17 7578264 7578264 G A TP53 Silent p.I195I 0.29 TCGA-W3-AA1V-06 17 76045529 76045529 C T TNRC6C Missense_Mutation p.P129L 0.19 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 17 7608955 7608955 C T EFNB3 Silent p.V13V 0.24 TCGA-W3-AA1V-06 17 76415710 76415710 G A PGS1 Silent p.V545V 0.49 TCGA-W3-AA1V-06 17 76475598 76475598 C T DNAH17 Silent p.R2609R 0.29 TCGA-W3-AA1V-06 17 76482455 76482455 C T DNAH17 Missense_Mutation p.E2304K 0.50 benign(0.269) TCGA-W3-AA1V-06 17 76482456 76482456 C T DNAH17 Silent p.P2303P 0.50 TCGA-W3-AA1V-06 17 76526592 76526592 G A DNAH17 Silent p.I1039I 0.25 TCGA-W3-AA1V-06 17 76798503 76798503 G A USP36 Silent p.L975L 0.56 TCGA-W3-AA1V-06 17 77043643 77043643 C T C1QTNF1 Nonsense_Mutation p.R107* 0.16 TCGA-W3-AA1V-06 17 77709396 77709396 C T ENPP7 Silent p.A318A 0.64 TCGA-W3-AA1V-06 17 7798754 7798754 C T CHD3 Missense_Mutation p.P593L 0.24 possibly_damaging(0.713) TCGA-W3-AA1V-06 17 7804297 7804297 C T CHD3 Missense_Mutation p.P1095S 0.22 possibly_damaging(0.641) TCGA-W3-AA1V-06 17 78073500 78073500 C T CCDC40 Missense_Mutation p.P1119S 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 78091446 78091446 C T GAA Silent p.P793P 0.34 TCGA-W3-AA1V-06 17 78091447 78091447 C T GAA Missense_Mutation p.R794C 0.34 tolerated(0.19) benign(0.004) TCGA-W3-AA1V-06 17 7809481 7809481 C T CHD3 Intron 0.28 TCGA-W3-AA1V-06 17 78247118 78247118 G A RNF213 Missense_Mutation p.G59E 0.33 benign(0.005) TCGA-W3-AA1V-06 17 78321986 78321986 C T RNF213 Missense_Mutation p.S3284L 0.25 benign(0.058) TCGA-W3-AA1V-06 17 78797040 78797040 C T RPTOR Intron 0.17 TCGA-W3-AA1V-06 17 7909815 7909815 C T GUCY2D Silent p.V387V 0.38 TCGA-W3-AA1V-06 17 7917254 7917254 G A GUCY2D Missense_Mutation p.D774N 0.21 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1V-06 17 79220791 79220791 T A SLC38A10 Missense_Mutation p.Q712H 0.23 tolerated(0.11) probably_damaging(0.914) TCGA-W3-AA1V-06 17 79226454 79226454 G A SLC38A10 Missense_Mutation p.R496C 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 17 79411803 79411803 G A RP11-1055B8.7 Silent p.L874L 0.48 TCGA-W3-AA1V-06 17 79411804 79411804 G A RP11-1055B8.7 Missense_Mutation p.V875I 0.44 benign(0.13) TCGA-W3-AA1V-06 17 79426593 79426593 G A RP11-1055B8.7 Silent p.Q1956Q 0.39 TCGA-W3-AA1V-06 17 79478377 79478377 C T ACTG1 Silent p.K213K 0.29 TCGA-W3-AA1V-06 17 79478392 79478392 G A ACTG1 Silent p.I208I 0.28 TCGA-W3-AA1V-06 17 79671698 79671698 G A SLC25A10 Silent p.P99P 0.46 TCGA-W3-AA1V-06 17 7983264 7983264 G A ALOX12B Intron 0.29 TCGA-W3-AA1V-06 17 7984302 7984302 G A ALOX12B Intron 0.23 TCGA-W3-AA1V-06 17 79974911 79974911 C T ASPSCR1 Missense_Mutation p.P618S 0.33 tolerated(0.12) probably_damaging(0.932) TCGA-W3-AA1V-06 17 79982630 79982630 C T LRRC45 Missense_Mutation p.S115F 0.12 deleterious(0) possibly_damaging(0.577) TCGA-W3-AA1V-06 17 79983313 79983313 C T LRRC45 Silent p.P197P 0.30 TCGA-W3-AA1V-06 17 80008555 80008555 G A RFNG Silent p.F134F 0.55 TCGA-W3-AA1V-06 17 80045669 80045669 G A FASN Missense_Mutation p.P979S 0.54 tolerated(0.41) benign(0.002) TCGA-W3-AA1V-06 17 80045670 80045670 G A FASN Silent p.N978N 0.54 TCGA-W3-AA1V-06 17 8011795 8011795 C A ALOXE3 Nonsense_Mutation p.E691* 0.32 TCGA-W3-AA1V-06 17 80282504 80282504 G A SECTM1 Silent p.L119L 0.33 TCGA-W3-AA1V-06 17 80332527 80332527 C T UTS2R Silent p.A109A 0.35 TCGA-W3-AA1V-06 17 8172633 8172633 C T PFAS 3'UTR 0.20 TCGA-W3-AA1V-06 17 8273460 8273460 G A KRBA2 Silent p.R157R 0.53 TCGA-W3-AA1V-06 17 9501619 9501619 G A WDR16 Missense_Mutation p.G202E 0.40 deleterious(0) possibly_damaging(0.901) TCGA-W3-AA1V-06 17 9590156 9590156 C T USP43 Missense_Mutation p.S428F 0.38 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 17 9631820 9631820 G A USP43 Missense_Mutation p.G962E 0.29 tolerated(0.09) benign(0.356) TCGA-W3-AA1V-06 17 9632285 9632285 C T USP43 Missense_Mutation p.T1117I 0.16 tolerated(0.12) benign(0.022) TCGA-W3-AA1V-06 17 9680524 9680524 G A DHRS7C Missense_Mutation p.P187L 0.53 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 17 9684841 9684841 C T DHRS7C Silent p.E75E 0.37 TCGA-W3-AA1V-06 17 9804434 9804434 G A RCVRN Intron 0.33 TCGA-W3-AA1V-06 18 12325194 12325197 ACGC CAA TUBB6 Frame_Shift_Del p.T136Qfs*29 0.57 TCGA-W3-AA1V-06 18 12978775 12978775 T A SEH1L Silent p.L215L 0.22 TCGA-W3-AA1V-06 18 13056630 13056630 T A CEP192 Missense_Mutation p.F1347L 0.16 tolerated(0.23) benign(0.084) TCGA-W3-AA1V-06 18 13124737 13124737 C T CEP192 Nonsense_Mutation p.R2528* 0.50 TCGA-W3-AA1V-06 18 13826253 13826253 C T MC5R Silent p.I163I 0.25 TCGA-W3-AA1V-06 18 13885010 13885010 G A MC2R Missense_Mutation p.H170Y 0.51 tolerated(0.12) benign(0.026) TCGA-W3-AA1V-06 18 14542873 14542873 C T POTEC Missense_Mutation p.M91I 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-W3-AA1V-06 18 14542879 14542879 G A POTEC Silent p.S89S 0.07 TCGA-W3-AA1V-06 18 14791405 14791405 C T ANKRD30B Silent p.P580P 0.21 TCGA-W3-AA1V-06 18 19997585 19997585 C T CTAGE1 Missense_Mutation p.E64K 0.27 deleterious(0.03) benign(0.426) TCGA-W3-AA1V-06 18 21053463 21053463 C T RIOK3 Missense_Mutation p.L296F 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 18 21115645 21115645 C T NPC1 Missense_Mutation p.E1089K 0.13 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 21124449 21124449 G A NPC1 Silent p.I663I 0.61 TCGA-W3-AA1V-06 18 21197771 21197771 C T ANKRD29 Silent p.L216L 0.21 TCGA-W3-AA1V-06 18 21390392 21390392 G A LAMA3 Missense_Mutation p.E556K 0.43 benign(0.034) TCGA-W3-AA1V-06 18 21399937 21399937 A T LAMA3 Silent p.G760G 0.50 TCGA-W3-AA1V-06 18 21487736 21487736 G A LAMA3 Missense_Mutation p.M2284I 0.24 benign(0.003) TCGA-W3-AA1V-06 18 21519245 21519245 G C LAMA3 Missense_Mutation p.C2974S 0.27 benign(0.392) TCGA-W3-AA1V-06 18 21698134 21698134 C T TTC39C Missense_Mutation p.S375F 0.31 deleterious(0.01) possibly_damaging(0.652) TCGA-W3-AA1V-06 18 22056889 22056889 C T HRH4 Missense_Mutation p.S179L 0.23 deleterious(0.04) benign(0.33) TCGA-W3-AA1V-06 18 23969843 23969843 C T TAF4B Missense_Mutation p.S819F 0.26 deleterious(0.03) probably_damaging(0.912) TCGA-W3-AA1V-06 18 24436105 24436105 C T AQP4 3'UTR 0.50 TCGA-W3-AA1V-06 18 24496208 24496208 G A CHST9 3'UTR 0.32 TCGA-W3-AA1V-06 18 2544251 2544251 G A METTL4 Missense_Mutation p.H406Y 0.39 deleterious(0) benign(0.309) TCGA-W3-AA1V-06 18 2722587 2722587 C T SMCHD1 Silent p.I843I 0.57 TCGA-W3-AA1V-06 18 28586992 28586992 C T DSC3 Missense_Mutation p.G590E 0.31 tolerated(0.76) benign(0.001) TCGA-W3-AA1V-06 18 28588104 28588104 G A DSC3 Missense_Mutation p.P514L 0.45 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 18 28588374 28588374 G A DSC3 Missense_Mutation p.H461Y 0.34 deleterious(0.02) benign(0.01) TCGA-W3-AA1V-06 18 28605756 28605756 A C DSC3 Silent p.P200P 0.43 TCGA-W3-AA1V-06 18 28660147 28660147 G A DSC2 Missense_Mutation p.R479C 0.39 deleterious(0) probably_damaging(0.913) TCGA-W3-AA1V-06 18 28669485 28669485 G A DSC2 Missense_Mutation p.R183W 0.34 deleterious(0.04) possibly_damaging(0.809) TCGA-W3-AA1V-06 18 28672189 28672189 C T DSC2 Missense_Mutation p.G77S 0.54 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 28714544 28714544 C T DSC1 Missense_Mutation p.E623K 0.27 tolerated(1) benign(0) TCGA-W3-AA1V-06 18 28935111 28935111 G A DSG1 Missense_Mutation p.M984I 0.22 tolerated(0.4) benign(0.001) TCGA-W3-AA1V-06 18 28966747 28966747 G A DSG4 Missense_Mutation p.G61R 0.33 tolerated(0.43) probably_damaging(0.995) TCGA-W3-AA1V-06 18 28979301 28979301 C T DSG4 Missense_Mutation p.H358Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 18 28980843 28980843 G A DSG4 Splice_Site p.X426_splice 0.23 TCGA-W3-AA1V-06 18 28983403 28983403 G A DSG4 Missense_Mutation p.G481E 0.50 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 28983456 28983456 C T DSG4 Missense_Mutation p.P499S 0.17 tolerated(0.96) benign(0.003) TCGA-W3-AA1V-06 18 28986132 28986132 G A DSG4 Missense_Mutation p.E577K 0.24 tolerated(0.11) benign(0.392) TCGA-W3-AA1V-06 18 29027808 29027808 A G DSG3 5'UTR 0.29 TCGA-W3-AA1V-06 18 29039109 29039109 C T DSG3 Silent p.F162F 0.43 TCGA-W3-AA1V-06 18 29102112 29102112 C A DSG2 Missense_Mutation p.S197Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 18 29104501 29104501 C T DSG2 Missense_Mutation p.R261C 0.38 deleterious(0) probably_damaging(0.94) TCGA-W3-AA1V-06 18 29125753 29125753 G A DSG2 Missense_Mutation p.E802K 0.27 tolerated(0.06) probably_damaging(0.981) TCGA-W3-AA1V-06 18 29339830 29339830 C T SLC25A52 Silent p.L275L 0.21 TCGA-W3-AA1V-06 18 2951269 2951269 G A LPIN2 Missense_Mutation p.S125L 0.46 tolerated(0.09) benign(0.017) TCGA-W3-AA1V-06 18 29795148 29795148 C T MEP1B Silent p.A561A 0.19 TCGA-W3-AA1V-06 18 3090761 3090761 C T MYOM1 Missense_Mutation p.E1302K 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-W3-AA1V-06 18 3112319 3112319 G A MYOM1 Missense_Mutation p.P1132L 0.28 deleterious(0.02) possibly_damaging(0.655) TCGA-W3-AA1V-06 18 31314348 31314348 G A ASXL3 Missense_Mutation p.E351K 0.50 probably_damaging(0.999) TCGA-W3-AA1V-06 18 32953959 32953959 A G ZNF396 Missense_Mutation p.F100L 0.28 deleterious(0) possibly_damaging(0.682) TCGA-W3-AA1V-06 18 33573145 33573145 G A RPRD1A Missense_Mutation p.P303L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 33780132 33780132 C T MOCOS Silent p.F262F 0.48 TCGA-W3-AA1V-06 18 40851685 40851685 C T SYT4 Missense_Mutation p.G321E 0.41 deleterious(0) possibly_damaging(0.711) TCGA-W3-AA1V-06 18 44013466 44013466 C T RNF165 Silent p.P125P 0.36 TCGA-W3-AA1V-06 18 44560000 44560000 C T TCEB3B Missense_Mutation p.D546N 0.33 deleterious(0) possibly_damaging(0.612) TCGA-W3-AA1V-06 18 44560401 44560401 C T TCEB3B Missense_Mutation p.R412K 0.65 tolerated(1) benign(0.168) TCGA-W3-AA1V-06 18 46287928 46287928 C T CTIF Silent p.I415I 0.57 TCGA-W3-AA1V-06 18 47421463 47421463 C T MYO5B Missense_Mutation p.E965K 0.19 tolerated(0.14) benign(0.005) TCGA-W3-AA1V-06 18 48473508 48473508 A T ME2 Missense_Mutation p.Y570F 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1V-06 18 50683795 50683795 T G DCC Missense_Mutation p.F444C 0.11 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 18 50929202 50929202 G A DCC Silent p.G958G 0.13 TCGA-W3-AA1V-06 18 50929253 50929253 G A DCC Silent p.G975G 0.38 TCGA-W3-AA1V-06 18 50994353 50994353 C T DCC Missense_Mutation p.P1237S 0.45 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 52544857 52544857 C T RAB27B Missense_Mutation p.A14V 0.18 tolerated(1) benign(0.21) TCGA-W3-AA1V-06 18 52571515 52571515 G A CCDC68 3'UTR 0.50 TCGA-W3-AA1V-06 18 52609992 52609992 G A CCDC68 Missense_Mutation p.P11S 0.16 tolerated(0.52) benign(0.026) TCGA-W3-AA1V-06 18 53128280 53128280 A T TCF4 Missense_Mutation p.S194T 0.19 deleterious(0) benign(0.017) TCGA-W3-AA1V-06 18 53128281 53128281 G A TCF4 Silent p.L193L 0.20 TCGA-W3-AA1V-06 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.17 TCGA-W3-AA1V-06 18 55282896 55282896 G A NARS Missense_Mutation p.P107S 0.54 tolerated(0.38) benign(0.006) TCGA-W3-AA1V-06 18 56202561 56202561 C T ALPK2 Missense_Mutation p.D1620N 0.53 tolerated(1) benign(0.003) TCGA-W3-AA1V-06 18 56985596 56985596 A T CPLX4 Missense_Mutation p.D33E 0.70 tolerated(0.75) benign(0.027) TCGA-W3-AA1V-06 18 61166488 61166488 G A SERPINB5 Missense_Mutation p.D235N 0.41 deleterious(0.04) probably_damaging(0.932) TCGA-W3-AA1V-06 18 61304872 61304872 G A SERPINB4 3'UTR 0.25 TCGA-W3-AA1V-06 18 61306439 61306439 C T SERPINB4 Missense_Mutation p.E250K 0.48 deleterious(0.01) possibly_damaging(0.821) TCGA-W3-AA1V-06 18 61309015 61309015 T A SERPINB4 Missense_Mutation p.E110D 0.57 tolerated(0.06) benign(0.068) TCGA-W3-AA1V-06 18 61310409 61310409 C T SERPINB4 Missense_Mutation p.A70T 0.16 tolerated(0.62) benign(0.05) TCGA-W3-AA1V-06 18 61310723 61310723 G A SERPINB4 Missense_Mutation p.S30F 0.58 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 18 61322788 61322788 A T SERPINB3 3'UTR 0.67 TCGA-W3-AA1V-06 18 61471748 61471748 G A SERPINB7 Missense_Mutation p.G341E 0.46 tolerated(0.1) benign(0.046) TCGA-W3-AA1V-06 18 61471951 61471951 A T SERPINB7 3'UTR 0.44 TCGA-W3-AA1V-06 18 61558785 61558785 C T SERPINB2 Missense_Mutation p.S36L 0.41 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 18 6243377 6243377 C T L3MBTL4 Missense_Mutation p.D126N 0.53 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 63430209 63430209 G A CDH7 Missense_Mutation p.R44Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 18 63489422 63489422 G A CDH7 Missense_Mutation p.G244E 0.39 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 18 63527018 63527018 G A CDH7 Silent p.T523T 0.35 TCGA-W3-AA1V-06 18 65178901 65178901 G A DSEL Missense_Mutation p.A992V 0.50 tolerated(0.38) possibly_damaging(0.904) TCGA-W3-AA1V-06 18 65181550 65181550 G A DSEL Missense_Mutation p.S109F 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-W3-AA1V-06 18 66678303 66678303 G A CCDC102B Missense_Mutation p.E466K 0.35 deleterious(0.04) benign(0.147) TCGA-W3-AA1V-06 18 67759931 67759931 A G RTTN Missense_Mutation p.M1338T 0.59 tolerated(0.23) benign(0.011) TCGA-W3-AA1V-06 18 6859824 6859824 C T ARHGAP28 Silent p.L59L 0.17 TCGA-W3-AA1V-06 18 6942004 6942004 G - LAMA1 3'UTR 0.36 TCGA-W3-AA1V-06 18 6959482 6959482 A G LAMA1 Missense_Mutation p.S2546P 0.51 deleterious(0.01) probably_damaging(0.949) TCGA-W3-AA1V-06 18 6982503 6982503 C T LAMA1 Silent p.K1961K 0.46 TCGA-W3-AA1V-06 18 70205560 70205560 C T CBLN2 Missense_Mutation p.D176N 0.81 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 18 70451128 70451128 A G NETO1 Missense_Mutation p.F218S 0.66 deleterious(0) possibly_damaging(0.718) TCGA-W3-AA1V-06 18 7231672 7231672 C T LRRC30 Missense_Mutation p.P179L 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 18 72342960 72342960 C T ZNF407 5'Flank 0.75 TCGA-W3-AA1V-06 18 77132882 77132882 G A ATP9B Missense_Mutation p.G1024S 0.19 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1V-06 18 77805975 77805975 C G RBFA Silent p.P284P 0.33 TCGA-W3-AA1V-06 18 8784389 8784389 G A SOGA2 Missense_Mutation p.G427S 0.58 tolerated(0.09) probably_damaging(0.999) TCGA-W3-AA1V-06 18 8825885 8825885 C T SOGA2 Silent p.P1459P 0.50 TCGA-W3-AA1V-06 18 9257010 9257010 T C ANKRD12 Missense_Mutation p.F1249L 0.22 tolerated(0.24) possibly_damaging(0.762) TCGA-W3-AA1V-06 18 9583228 9583228 G A PPP4R1 Nonsense_Mutation p.R269* 0.37 TCGA-W3-AA1V-06 18 9583229 9583229 G T PPP4R1 Silent p.V268V 0.34 TCGA-W3-AA1V-06 18 9944920 9944920 G A VAPA Splice_Site p.X140_splice 0.29 TCGA-W3-AA1V-06 19 10078714 10078714 G A COL5A3 Silent p.P1452P 0.22 TCGA-W3-AA1V-06 19 10100195 10100195 G A COL5A3 Missense_Mutation p.P666S 0.83 unknown(0) TCGA-W3-AA1V-06 19 10102304 10102304 A G COL5A3 Silent p.I658I 0.62 TCGA-W3-AA1V-06 19 10102480 10102480 C T COL5A3 Missense_Mutation p.G644E 0.44 unknown(0) TCGA-W3-AA1V-06 19 10104463 10104463 C T COL5A3 Missense_Mutation p.G536E 0.24 unknown(0) TCGA-W3-AA1V-06 19 10204197 10204197 C T ANGPTL6 Silent p.E350E 0.67 TCGA-W3-AA1V-06 19 10224969 10224969 C T PPAN-P2RY11 Missense_Mutation p.A647V 0.71 tolerated_low_confidence(0.17) probably_damaging(0.994) TCGA-W3-AA1V-06 19 10398538 10398538 G A ICAM4 Intron 0.69 TCGA-W3-AA1V-06 19 10431588 10431588 G A RAVER1 Missense_Mutation p.P522S 0.47 tolerated(0.51) probably_damaging(0.972) TCGA-W3-AA1V-06 19 1044644 1044644 C T ABCA7 Silent p.A372A 0.33 TCGA-W3-AA1V-06 19 10799296 10799296 G T ILF3 Silent p.G835G 0.69 TCGA-W3-AA1V-06 19 11218153 11218153 C T LDLR Silent p.D301D 0.68 TCGA-W3-AA1V-06 19 11453545 11453545 G A TMEM205 Silent p.V172V 0.72 TCGA-W3-AA1V-06 19 11465615 11465615 C T CCDC159 3'UTR 0.40 TCGA-W3-AA1V-06 19 11545865 11545865 G A CCDC151 5'UTR 0.40 TCGA-W3-AA1V-06 19 11658670 11658670 G A CNN1 Missense_Mutation p.R150Q 0.31 tolerated(0.12) benign(0.114) TCGA-W3-AA1V-06 19 11942502 11942502 C T ZNF440 Missense_Mutation p.P171S 0.69 deleterious(0.04) probably_damaging(0.919) TCGA-W3-AA1V-06 19 11944602 11944602 C T ZNF440 3'UTR 0.72 TCGA-W3-AA1V-06 19 12128752 12128752 C T ZNF433 Splice_Site p.X47_splice 0.38 TCGA-W3-AA1V-06 19 12258602 12258602 C T ZNF625 Missense_Mutation p.E7K 0.37 deleterious(0.04) probably_damaging(0.955) TCGA-W3-AA1V-06 19 12541764 12541764 A C ZNF443 Missense_Mutation p.F408V 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 19 12575350 12575350 G T ZNF709 Silent p.S462S 0.31 TCGA-W3-AA1V-06 19 12639441 12639441 G A ZNF564 Nonsense_Mutation p.Q25* 0.74 TCGA-W3-AA1V-06 19 13035577 13035577 G A FARSA Silent p.F357F 0.21 TCGA-W3-AA1V-06 19 13410046 13410046 C T CACNA1A Missense_Mutation p.E801K 0.27 possibly_damaging(0.81) TCGA-W3-AA1V-06 19 13563804 13563804 C T CACNA1A Missense_Mutation p.G142E 0.83 probably_damaging(0.969) TCGA-W3-AA1V-06 19 13869906 13869906 C T CCDC130 Intron 0.50 TCGA-W3-AA1V-06 19 14232493 14232493 G A ASF1B Missense_Mutation p.P85S 0.40 deleterious(0) probably_damaging(0.921) TCGA-W3-AA1V-06 19 1438509 1438509 C T RPS15 Intron 0.45 TCGA-W3-AA1V-06 19 1468600 1468600 C T APC2 Missense_Mutation p.S1767F 0.43 benign(0.002) TCGA-W3-AA1V-06 19 15124516 15124516 G A CCDC105 Nonsense_Mutation p.W201* 0.87 TCGA-W3-AA1V-06 19 15198125 15198125 G A OR1I1 Silent p.A83A 0.65 TCGA-W3-AA1V-06 19 15302836 15302836 G A NOTCH3 Missense_Mutation p.P205L 0.58 deleterious(0.03) possibly_damaging(0.517) TCGA-W3-AA1V-06 19 15302837 15302837 G A NOTCH3 Missense_Mutation p.P205S 0.56 deleterious(0.01) benign(0.359) TCGA-W3-AA1V-06 19 15366226 15366226 G A BRD4 Silent p.S643S 0.45 TCGA-W3-AA1V-06 19 15559079 15559079 G A WIZ Missense_Mutation p.R14C 0.38 deleterious_low_confidence(0) benign(0.119) TCGA-W3-AA1V-06 19 15562865 15562865 C T RASAL3 Silent p.L961L 0.23 TCGA-W3-AA1V-06 19 15586498 15586498 G A PGLYRP2 Missense_Mutation p.S328L 0.27 tolerated(0.12) benign(0.029) TCGA-W3-AA1V-06 19 15733915 15733915 G A CYP4F8 Intron 0.43 TCGA-W3-AA1V-06 19 15794337 15794337 C G CYP4F12 Missense_Mutation p.L228V 0.26 deleterious(0.02) possibly_damaging(0.764) TCGA-W3-AA1V-06 19 15852298 15852298 C T OR10H3 Silent p.Y32Y 0.35 TCGA-W3-AA1V-06 19 15905478 15905478 C T OR10H5 Missense_Mutation p.A207V 0.63 tolerated(1) benign(0.042) TCGA-W3-AA1V-06 19 15905792 15905792 C T OR10H5 Missense_Mutation p.P312S 0.58 tolerated(0.16) benign(0.009) TCGA-W3-AA1V-06 19 15918182 15918182 G A OR10H1 Silent p.I222I 0.59 TCGA-W3-AA1V-06 19 15990200 15990200 C T CYP4F2 Silent p.K451K 0.73 TCGA-W3-AA1V-06 19 16003152 16003152 C T CYP4F2 Missense_Mutation p.M164I 0.55 tolerated(0.1) benign(0.002) TCGA-W3-AA1V-06 19 16038256 16038256 G A CYP4F11 Silent p.F127F 0.71 TCGA-W3-AA1V-06 19 16060165 16060165 C T OR10H4 Silent p.L116L 0.78 TCGA-W3-AA1V-06 19 16279088 16279088 G A CIB3 Missense_Mutation p.P69L 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 19 16279089 16279089 G A CIB3 Missense_Mutation p.P69S 0.36 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 19 16472649 16472649 G A EPS15L1 Missense_Mutation p.P843S 0.71 tolerated(0.25) benign(0.073) TCGA-W3-AA1V-06 19 16860413 16860413 C T NWD1 Silent p.A320A 0.26 TCGA-W3-AA1V-06 19 17068707 17068707 C T CPAMD8 Silent p.R791R 0.26 TCGA-W3-AA1V-06 19 17068708 17068708 C T CPAMD8 Missense_Mutation p.R791K 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1V-06 19 17115177 17115177 G A CPAMD8 Silent p.F240F 0.77 TCGA-W3-AA1V-06 19 17295680 17295680 C A MYO9B Missense_Mutation p.L794M 0.37 tolerated(0.17) possibly_damaging(0.883) TCGA-W3-AA1V-06 19 17379868 17379868 C T BABAM1 Missense_Mutation p.R85W 0.75 deleterious(0) probably_damaging(0.93) TCGA-W3-AA1V-06 19 17384948 17384948 C T BABAM1 Silent p.L166L 0.22 TCGA-W3-AA1V-06 19 17476340 17476340 G A PLVAP Nonsense_Mutation p.Q312* 0.38 TCGA-W3-AA1V-06 19 17652952 17652952 C T FAM129C Missense_Mutation p.S424L 0.69 deleterious(0.02) benign(0.311) TCGA-W3-AA1V-06 19 17937428 17937428 C T JAK3 3'UTR 0.25 TCGA-W3-AA1V-06 19 18180488 18180488 C T IL12RB1 Missense_Mutation p.G353R 0.30 tolerated(0.15) benign(0.133) TCGA-W3-AA1V-06 19 18507256 18507256 C T LRRC25 Missense_Mutation p.G173E 0.56 deleterious(0) benign(0.041) TCGA-W3-AA1V-06 19 18971718 18971718 C T UPF1 Missense_Mutation p.P795L 0.80 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 19 19121055 19121055 C T SUGP2 Silent p.Q649Q 0.78 TCGA-W3-AA1V-06 19 19135734 19135734 G A SUGP2 Missense_Mutation p.L475F 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 19 19338381 19338381 C T NCAN Missense_Mutation p.S651F 0.74 tolerated(0.36) benign(0.275) TCGA-W3-AA1V-06 19 19612078 19612078 G A GATAD2A Silent p.K451K 0.20 TCGA-W3-AA1V-06 19 19625558 19625558 C A TSSK6 Missense_Mutation p.G227C 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 19 1980183 1980183 C T CSNK1G2 Missense_Mutation p.S410L 0.32 deleterious_low_confidence(0.02) benign(0.029) TCGA-W3-AA1V-06 19 20002691 20002691 C T ZNF253 Missense_Mutation p.S212F 0.35 tolerated(0.54) benign(0.012) TCGA-W3-AA1V-06 19 20044511 20044511 C T ZNF93 Silent p.I249I 0.61 TCGA-W3-AA1V-06 19 20045371 20045371 C T ZNF93 Missense_Mutation p.P536L 0.28 tolerated(0.08) benign(0.262) TCGA-W3-AA1V-06 19 20116903 20116903 C T ZNF682 Missense_Mutation p.E470K 0.40 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 19 20135099 20135099 C T ZNF682 Silent p.R30R 0.26 TCGA-W3-AA1V-06 19 2073376 2073376 G A MOB3A 3'UTR 0.74 TCGA-W3-AA1V-06 19 20959243 20959243 G A ZNF66 5'UTR 0.69 TCGA-W3-AA1V-06 19 21541845 21541845 C A ZNF738 5'UTR 0.46 TCGA-W3-AA1V-06 19 21606876 21606876 G A ZNF493 Missense_Mutation p.R472Q 0.67 tolerated(0.78) benign(0.002) TCGA-W3-AA1V-06 19 21608360 21608360 C T ZNF493 3'UTR 0.75 TCGA-W3-AA1V-06 19 21909429 21909429 G A ZNF100 3'UTR 0.20 TCGA-W3-AA1V-06 19 22154874 22154874 G A ZNF208 Missense_Mutation p.L988F 0.35 deleterious(0.05) benign(0.327) TCGA-W3-AA1V-06 19 22155861 22155861 G A ZNF208 Missense_Mutation p.H659Y 0.30 deleterious(0.03) benign(0.39) TCGA-W3-AA1V-06 19 22157140 22157140 T A ZNF208 Missense_Mutation p.K232N 0.43 tolerated(0.47) benign(0.364) TCGA-W3-AA1V-06 19 22157275 22157275 G A ZNF208 Silent p.H187H 0.63 TCGA-W3-AA1V-06 19 2216680 2216680 C T DOT1L Missense_Mutation p.S775F 0.80 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-W3-AA1V-06 19 22270818 22270818 G A ZNF257 Missense_Mutation p.R89Q 0.22 tolerated(1) benign(0) TCGA-W3-AA1V-06 19 22363176 22363176 G A ZNF676 Missense_Mutation p.P448L 0.24 tolerated(0.05) benign(0.008) TCGA-W3-AA1V-06 19 22942286 22942286 C T ZNF99 Missense_Mutation p.G142E 0.58 tolerated(0.84) benign(0.002) TCGA-W3-AA1V-06 19 22942425 22942425 G A ZNF99 Nonsense_Mutation p.Q96* 0.60 TCGA-W3-AA1V-06 19 22951157 22951157 C T ZNF99 Missense_Mutation p.G59E 0.29 tolerated(0.34) possibly_damaging(0.752) TCGA-W3-AA1V-06 19 23299935 23299935 G A ZNF730 5'UTR 0.75 TCGA-W3-AA1V-06 19 23299961 23299961 C T ZNF730 5'UTR 0.29 TCGA-W3-AA1V-06 19 23329550 23329550 T G ZNF730 3'UTR 0.27 TCGA-W3-AA1V-06 19 23926559 23926559 G A ZNF681 Missense_Mutation p.A598V 0.69 tolerated(0.08) probably_damaging(0.918) TCGA-W3-AA1V-06 19 2416596 2416596 G A TMPRSS9 Silent p.G568G 0.64 TCGA-W3-AA1V-06 19 24309201 24309201 G A ZNF254 Silent p.K133K 0.26 TCGA-W3-AA1V-06 19 24309202 24309202 G A ZNF254 Missense_Mutation p.V134M 0.27 tolerated(0.22) benign(0.285) TCGA-W3-AA1V-06 19 2790611 2790611 A G THOP1 Missense_Mutation p.D70G 0.63 deleterious(0.02) benign(0.014) TCGA-W3-AA1V-06 19 2876147 2876147 G A ZNF556 Missense_Mutation p.E63K 0.65 tolerated(0.27) benign(0.007) TCGA-W3-AA1V-06 19 2878273 2878273 C T ZNF556 Silent p.A439A 0.34 TCGA-W3-AA1V-06 19 30936347 30936347 G A ZNF536 Missense_Mutation p.M626I 0.81 tolerated(0.12) benign(0) TCGA-W3-AA1V-06 19 31768328 31768328 C T TSHZ3 Missense_Mutation p.D791N 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 19 3179809 3179809 G A S1PR4 Missense_Mutation p.R340Q 0.41 tolerated(0.43) benign(0.003) TCGA-W3-AA1V-06 19 3179810 3179810 G C S1PR4 Silent p.R340R 0.39 TCGA-W3-AA1V-06 19 33699865 33699865 C T SLC7A10 Missense_Mutation p.E502K 0.53 tolerated(0.1) benign(0.01) TCGA-W3-AA1V-06 19 35435760 35435760 G A ZNF30 3'UTR 0.68 TCGA-W3-AA1V-06 19 35449385 35449385 G A ZNF792 Silent p.A458A 0.78 TCGA-W3-AA1V-06 19 35449386 35449386 G A ZNF792 Missense_Mutation p.A458V 0.77 tolerated(0.15) benign(0.437) TCGA-W3-AA1V-06 19 35612229 35612229 C T FXYD3 Intron 0.71 TCGA-W3-AA1V-06 19 35718989 35718989 C T FAM187B Missense_Mutation p.E199K 0.88 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 19 35831964 35831964 G A CD22 Nonsense_Mutation p.W477* 0.80 TCGA-W3-AA1V-06 19 35941597 35941597 C T FFAR2 Silent p.F327F 0.75 TCGA-W3-AA1V-06 19 36046363 36046363 G A ATP4A Silent p.I712I 0.85 TCGA-W3-AA1V-06 19 3613277 3613277 G A CACTIN Missense_Mutation p.P522L 0.77 tolerated(0.18) benign(0.006) TCGA-W3-AA1V-06 19 3613278 3613278 G A CACTIN Missense_Mutation p.P522S 0.68 tolerated(0.49) benign(0.01) TCGA-W3-AA1V-06 19 36159267 36159267 C T UPK1A Intron 0.73 TCGA-W3-AA1V-06 19 36279030 36279030 C T ARHGAP33 Missense_Mutation p.S1027F 0.55 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-W3-AA1V-06 19 36297674 36297674 G A PRODH2 Missense_Mutation p.P322L 0.59 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 19 36317403 36317403 G A NPHS1 3'UTR 0.71 TCGA-W3-AA1V-06 19 36333406 36333406 G A NPHS1 Missense_Mutation p.S794F 0.76 deleterious(0) possibly_damaging(0.646) TCGA-W3-AA1V-06 19 36349704 36349704 C T KIRREL2 Missense_Mutation p.P154S 0.81 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 19 36357300 36357300 C T KIRREL2 Missense_Mutation p.S678F 0.30 deleterious(0) possibly_damaging(0.766) TCGA-W3-AA1V-06 19 36370376 36370376 G A APLP1 3'UTR 0.65 TCGA-W3-AA1V-06 19 36388567 36388567 G A NFKBID 5'UTR 0.18 TCGA-W3-AA1V-06 19 36497433 36497433 C T SYNE4 Silent p.G253G 0.55 TCGA-W3-AA1V-06 19 36582128 36582128 C T WDR62 Silent p.F687F 0.33 TCGA-W3-AA1V-06 19 36685199 36685199 G A ZNF565 Silent p.S56S 0.30 TCGA-W3-AA1V-06 19 37210932 37210932 C T ZNF567 Missense_Mutation p.L405F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 19 3752932 3752932 G A APBA3 Silent p.F356F 0.30 TCGA-W3-AA1V-06 19 3760043 3760043 G A APBA3 Missense_Mutation p.P74S 0.33 tolerated_low_confidence(0.84) benign(0.003) TCGA-W3-AA1V-06 19 37618878 37618878 C T ZNF420 Missense_Mutation p.H329Y 0.70 deleterious(0) benign(0.365) TCGA-W3-AA1V-06 19 37642667 37642667 G A ZNF585A Missense_Mutation p.H657Y 0.55 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 19 3767442 3767442 C T MRPL54 3'UTR 0.40 TCGA-W3-AA1V-06 19 37676372 37676372 A C ZNF585B Silent p.P689P 0.61 TCGA-W3-AA1V-06 19 38055978 38055978 T A ZNF571 Missense_Mutation p.E451V 0.27 tolerated(0.06) probably_damaging(0.951) TCGA-W3-AA1V-06 19 38125901 38125901 C T ZFP30 Missense_Mutation p.R514Q 0.38 deleterious(0.03) probably_damaging(0.964) TCGA-W3-AA1V-06 19 38127167 38127167 C T ZFP30 Missense_Mutation p.G92E 0.63 tolerated(1) benign(0) TCGA-W3-AA1V-06 19 38160864 38160864 T C ZNF781 Silent p.E62E 0.24 TCGA-W3-AA1V-06 19 38229286 38229286 T C ZNF573 3'UTR 0.24 TCGA-W3-AA1V-06 19 38229439 38229439 G A ZNF573 Missense_Mutation p.S651L 0.58 deleterious(0.02) probably_damaging(0.978) TCGA-W3-AA1V-06 19 38230421 38230421 G A ZNF573 Missense_Mutation p.H324Y 0.42 deleterious(0) probably_damaging(0.977) TCGA-W3-AA1V-06 19 38597199 38597199 C T SIPA1L3 Silent p.S684S 0.32 TCGA-W3-AA1V-06 19 38621272 38621272 C T SIPA1L3 Silent p.L1001L 0.25 TCGA-W3-AA1V-06 19 38795318 38795318 G A C19orf33 Missense_Mutation p.D65N 0.83 tolerated_low_confidence(0.23) benign(0.003) TCGA-W3-AA1V-06 19 39009864 39009864 G A RYR1 Silent p.Q3343Q 0.78 TCGA-W3-AA1V-06 19 39018418 39018418 G A RYR1 Silent p.L3606L 0.78 TCGA-W3-AA1V-06 19 39018419 39018419 G A RYR1 Missense_Mutation p.D3607N 0.80 benign(0.03) TCGA-W3-AA1V-06 19 39100300 39100300 G A MAP4K1 Silent p.I314I 0.45 TCGA-W3-AA1V-06 19 3913816 3913816 C T ATCAY Silent p.I309I 0.35 TCGA-W3-AA1V-06 19 39228196 39228196 C G CAPN12 Missense_Mutation p.E350Q 0.89 tolerated(0.44) benign(0.013) TCGA-W3-AA1V-06 19 39229289 39229289 C T CAPN12 Splice_Site p.X244_splice 0.90 TCGA-W3-AA1V-06 19 39408410 39408410 G A SARS2 Silent p.L374L 0.32 TCGA-W3-AA1V-06 19 39597698 39597698 C T PAPL Missense_Mutation p.H409Y 0.73 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 19 3976542 3976542 G A EEF2 3'UTR 0.62 TCGA-W3-AA1V-06 19 39998533 39998533 T A DLL3 Silent p.A579A 0.56 TCGA-W3-AA1V-06 19 40399259 40399259 G A FCGBP Missense_Mutation p.R2146C 0.19 possibly_damaging(0.898) TCGA-W3-AA1V-06 19 40399260 40399260 G T FCGBP Silent p.A2145A 0.20 TCGA-W3-AA1V-06 19 40408636 40408636 G A FCGBP Silent p.F1401F 0.74 TCGA-W3-AA1V-06 19 40433485 40433485 G A FCGBP Missense_Mutation p.R262C 0.17 possibly_damaging(0.854) TCGA-W3-AA1V-06 19 40883707 40883707 C T PLD3 Silent p.V400V 0.19 TCGA-W3-AA1V-06 19 40929166 40929166 G A SERTAD1 Silent p.A96A 0.87 TCGA-W3-AA1V-06 19 41029546 41029546 A G SPTBN4 Missense_Mutation p.K1286R 0.83 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 19 41289960 41289960 C T RAB4B Missense_Mutation p.S137F 0.59 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 19 41512820 41512820 G A CYP2B6 Missense_Mutation p.M165I 0.86 tolerated(0.46) benign(0) TCGA-W3-AA1V-06 19 41518333 41518333 G A CYP2B6 Missense_Mutation p.M365I 0.46 tolerated(0.57) benign(0.004) TCGA-W3-AA1V-06 19 4157081 4157081 C G CREB3L3 Silent p.P82P 0.42 TCGA-W3-AA1V-06 19 41630649 41630649 C T CYP2F1 Silent p.L330L 0.81 TCGA-W3-AA1V-06 19 41765525 41765525 G A AXL Missense_Mutation p.E801K 0.26 tolerated(0.16) possibly_damaging(0.733) TCGA-W3-AA1V-06 19 42259524 42259524 G A CEACAM6 5'UTR 0.37 TCGA-W3-AA1V-06 19 42566801 42566801 G A GRIK5 Missense_Mutation p.P116L 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 19 42566802 42566802 G A GRIK5 Missense_Mutation p.P116S 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 19 42582913 42582913 C T ZNF574 Missense_Mutation p.P52L 0.56 tolerated(0.52) possibly_damaging(0.908) TCGA-W3-AA1V-06 19 42839511 42839511 G A MEGF8 Missense_Mutation p.E268K 0.69 tolerated(0.06) benign(0.068) TCGA-W3-AA1V-06 19 42848629 42848629 C T MEGF8 Silent p.L609L 0.61 TCGA-W3-AA1V-06 19 43233987 43233987 C T PSG3 Missense_Mutation p.E311K 0.51 tolerated(0.29) possibly_damaging(0.734) TCGA-W3-AA1V-06 19 43234186 43234186 G A PSG3 Silent p.I244I 0.70 TCGA-W3-AA1V-06 19 43372965 43372965 C T PSG1 Missense_Mutation p.E311K 0.67 tolerated(0.29) possibly_damaging(0.856) TCGA-W3-AA1V-06 19 43414907 43414907 G T PSG6 Nonsense_Mutation p.Y177* 0.28 TCGA-W3-AA1V-06 19 43439569 43439569 G A PSG7 Silent p.T139T 0.25 TCGA-W3-AA1V-06 19 43586725 43586725 C T PSG2 5'UTR 0.75 TCGA-W3-AA1V-06 19 43690561 43690561 C T PSG5 5'UTR 0.40 TCGA-W3-AA1V-06 19 43697458 43697458 G A PSG4 3'UTR 0.73 TCGA-W3-AA1V-06 19 43772073 43772073 C T PSG9 Missense_Mutation p.R98K 0.22 deleterious(0) probably_damaging(0.937) TCGA-W3-AA1V-06 19 43920609 43920609 C T TEX101 Missense_Mutation p.P116L 0.23 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 19 43965978 43965978 G A LYPD3 Missense_Mutation p.P189L 0.85 tolerated(0.12) probably_damaging(1) TCGA-W3-AA1V-06 19 44096697 44096697 G A IRGQ Silent p.P451P 0.71 TCGA-W3-AA1V-06 19 44222749 44222749 G A IRGC Silent p.E13E 0.75 TCGA-W3-AA1V-06 19 44278659 44278659 C T KCNN4 Missense_Mutation p.R123Q 0.50 tolerated(0.61) benign(0.007) TCGA-W3-AA1V-06 19 44278703 44278703 G A KCNN4 Silent p.I108I 0.38 TCGA-W3-AA1V-06 19 44661480 44661480 C T ZNF234 Silent p.F437F 0.57 TCGA-W3-AA1V-06 19 44891064 44891064 C T ZNF285 Missense_Mutation p.R448K 0.45 tolerated(0.2) possibly_damaging(0.649) TCGA-W3-AA1V-06 19 44933587 44933587 C T ZNF229 Missense_Mutation p.G457R 0.73 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 19 44981239 44981239 G A ZNF180 Missense_Mutation p.H487Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 19 4504660 4504660 G A PLIN4 Silent p.L1295L 0.47 TCGA-W3-AA1V-06 19 45297466 45297466 C T CBLC Silent p.P430P 0.80 TCGA-W3-AA1V-06 19 45445558 45445558 C T APOC4 Silent p.L8L 0.32 TCGA-W3-AA1V-06 19 45528932 45528932 C T RELB Missense_Mutation p.R275W 0.83 deleterious(0.02) probably_damaging(0.982) TCGA-W3-AA1V-06 19 46195221 46195221 C T SNRPD2 5'UTR 0.19 TCGA-W3-AA1V-06 19 46289876 46289876 G A DMWD Missense_Mutation p.S293L 0.88 deleterious(0.03) benign(0) TCGA-W3-AA1V-06 19 46299175 46299176 - TCCTCGCCCTCCTCCTCT RSPH6A In_Frame_Ins p.E707_G712dup 0.23 TCGA-W3-AA1V-06 19 46509882 46509882 G A CCDC61 Silent p.K99K 0.80 TCGA-W3-AA1V-06 19 46828807 46828807 G A HIF3A Missense_Mutation p.E451K 0.80 tolerated(0.12) benign(0.005) TCGA-W3-AA1V-06 19 47763864 47763864 C T CCDC9 Missense_Mutation p.S77F 0.56 tolerated(0.07) benign(0.011) TCGA-W3-AA1V-06 19 47824116 47824116 G A C5AR1 3'UTR 0.78 TCGA-W3-AA1V-06 19 47845033 47845033 C T C5AR2 Missense_Mutation p.S326F 0.79 tolerated(0.06) benign(0.028) TCGA-W3-AA1V-06 19 48551522 48551522 G A PLA2G4C 3'UTR 0.63 TCGA-W3-AA1V-06 19 49013847 49013847 C T LMTK3 Missense_Mutation p.G56R 0.90 probably_damaging(0.998) TCGA-W3-AA1V-06 19 49090544 49090544 G A SULT2B1 Nonsense_Mutation p.W91* 0.23 TCGA-W3-AA1V-06 19 49261382 49261382 G A FGF21 Missense_Mutation p.G179R 0.91 tolerated(0.17) benign(0.029) TCGA-W3-AA1V-06 19 50017684 50017684 C T FCGRT Missense_Mutation p.S181F 0.91 deleterious(0.01) probably_damaging(0.992) TCGA-W3-AA1V-06 19 50099052 50099052 C T PRR12 Missense_Mutation p.P487L 1.00 possibly_damaging(0.851) TCGA-W3-AA1V-06 19 50103159 50103159 C T PRR12 Missense_Mutation p.P1437S 0.56 possibly_damaging(0.803) TCGA-W3-AA1V-06 19 50103160 50103160 C T PRR12 Missense_Mutation p.P1437L 0.61 possibly_damaging(0.859) TCGA-W3-AA1V-06 19 50154315 50154315 C T SCAF1 Silent p.P223P 0.83 TCGA-W3-AA1V-06 19 50155695 50155695 G A SCAF1 Silent p.R683R 0.39 TCGA-W3-AA1V-06 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.41 TCGA-W3-AA1V-06 19 501739 501739 G A MADCAM1 Silent p.P246P 0.44 TCGA-W3-AA1V-06 19 501740 501740 G A MADCAM1 Missense_Mutation p.E247K 0.44 tolerated(0.67) unknown(0) TCGA-W3-AA1V-06 19 50209539 50209539 C T CPT1C Silent p.A404A 0.59 TCGA-W3-AA1V-06 19 50547943 50547943 G A ZNF473 Silent p.K81K 0.76 TCGA-W3-AA1V-06 19 50753044 50753044 C T MYH14 Silent p.L540L 0.79 TCGA-W3-AA1V-06 19 50764749 50764749 G A MYH14 Silent p.L814L 0.29 TCGA-W3-AA1V-06 19 50912133 50912133 C T POLD1 Missense_Mutation p.R623W 0.23 deleterious(0.01) possibly_damaging(0.892) TCGA-W3-AA1V-06 19 50940734 50940734 C T MYBPC2 Silent p.P156P 0.55 TCGA-W3-AA1V-06 19 51192580 51192580 G A SHANK1 Intron 0.67 TCGA-W3-AA1V-06 19 51381778 51381778 G A KLK2 Missense_Mutation p.R250Q 0.25 tolerated(0.18) benign(0.003) TCGA-W3-AA1V-06 19 51446935 51446935 G A KLK5 Silent p.L278L 0.24 TCGA-W3-AA1V-06 19 51453301 51453301 C T KLK5 Missense_Mutation p.D49N 0.37 tolerated(0.09) possibly_damaging(0.811) TCGA-W3-AA1V-06 19 51561890 51561890 G A KLK13 Missense_Mutation p.R184C 0.26 tolerated(0.19) probably_damaging(0.956) TCGA-W3-AA1V-06 19 51631694 51631694 C T SIGLEC9 Missense_Mutation p.S377L 0.63 deleterious(0.04) probably_damaging(0.918) TCGA-W3-AA1V-06 19 51645636 51645636 C T SIGLEC7 Silent p.L4L 0.44 TCGA-W3-AA1V-06 19 51671069 51671069 A C CTD-3187F8.14 Intron 0.16 TCGA-W3-AA1V-06 19 51728766 51728766 G A CD33 Silent p.R110R 0.29 TCGA-W3-AA1V-06 19 51738432 51738432 G A CD33 Missense_Mutation p.G256R 0.44 deleterious(0) possibly_damaging(0.901) TCGA-W3-AA1V-06 19 51768744 51768744 G A SIGLECL1 Missense_Mutation p.D49N 0.78 tolerated(1) benign(0.007) TCGA-W3-AA1V-06 19 51890415 51890415 C T LIM2 Missense_Mutation p.G95R 0.41 tolerated_low_confidence(0.66) benign(0.295) TCGA-W3-AA1V-06 19 51919227 51919227 C T SIGLEC10 Missense_Mutation p.D317N 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1V-06 19 52132752 52132752 G A SIGLEC5 Missense_Mutation p.P187S 0.58 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 19 52132765 52132765 C T SIGLEC5 Silent p.G182G 0.71 TCGA-W3-AA1V-06 19 5214445 5214445 C T PTPRS Missense_Mutation p.G1514D 0.73 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 19 5219980 5219980 G A PTPRS Silent p.F1245F 0.38 TCGA-W3-AA1V-06 19 52220298 52220298 C T HAS1 Missense_Mutation p.R284Q 0.76 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 19 52250221 52250221 C T FPR1 Silent p.T9T 0.94 TCGA-W3-AA1V-06 19 52327142 52327142 G A FPR3 Silent p.V47V 0.21 TCGA-W3-AA1V-06 19 52659546 52659546 G A ZNF836 Missense_Mutation p.H464Y 0.55 deleterious(0) probably_damaging(0.923) TCGA-W3-AA1V-06 19 52724243 52724243 C T PPP2R1A Missense_Mutation p.R459C 0.52 deleterious(0) possibly_damaging(0.895) TCGA-W3-AA1V-06 19 52870005 52870005 C T ZNF610 Silent p.T458T 0.26 TCGA-W3-AA1V-06 19 52918838 52918838 G A ZNF528 Missense_Mutation p.E245K 0.79 deleterious(0.03) possibly_damaging(0.536) TCGA-W3-AA1V-06 19 52955006 52955006 G A ZNF578 5'Flank 0.59 TCGA-W3-AA1V-06 19 53056589 53056589 C T ZNF808 Silent p.D140D 0.51 TCGA-W3-AA1V-06 19 53057828 53057828 C T ZNF808 Silent p.V553V 0.78 TCGA-W3-AA1V-06 19 53058623 53058624 TT C ZNF808 Frame_Shift_Del p.Y819Tfs*49 0.34 TCGA-W3-AA1V-06 19 53209406 53209406 G A ZNF611 Missense_Mutation p.S301F 0.19 tolerated(0.17) possibly_damaging(0.828) TCGA-W3-AA1V-06 19 53302834 53302834 G A ZNF28 3'UTR 0.45 TCGA-W3-AA1V-06 19 53431860 53431860 G A ZNF321P 3'UTR 0.34 TCGA-W3-AA1V-06 19 53432626 53432626 C T ZNF321P Missense_Mutation p.A78T 0.58 tolerated(0.11) benign(0.433) TCGA-W3-AA1V-06 19 53459304 53459304 C T ZNF816 Silent p.K13K 0.24 TCGA-W3-AA1V-06 19 53459357 53459357 C T ZNF816 Intron 0.57 TCGA-W3-AA1V-06 19 53611786 53611786 G A ZNF415 Silent p.S504S 0.82 TCGA-W3-AA1V-06 19 53668167 53668167 G A ZNF665 Missense_Mutation p.H526Y 0.77 tolerated(0.3) benign(0.098) TCGA-W3-AA1V-06 19 53741737 53741737 C T ZNF677 Silent p.V81V 0.28 TCGA-W3-AA1V-06 19 53762368 53762368 G A VN1R2 Missense_Mutation p.G247E 0.75 tolerated(0.07) possibly_damaging(0.613) TCGA-W3-AA1V-06 19 53848880 53848880 C T ZNF845 Missense_Mutation p.S46F 0.71 tolerated(0.15) benign(0.059) TCGA-W3-AA1V-06 19 53989998 53989998 A G ZNF813 Missense_Mutation p.N43S 0.24 deleterious(0) possibly_damaging(0.777) TCGA-W3-AA1V-06 19 54140014 54140014 G A DPRX Silent p.P116P 0.77 TCGA-W3-AA1V-06 19 54225487 54225487 C T MIR520G RNA 0.47 TCGA-W3-AA1V-06 19 54313227 54313227 G A NLRP12 Silent p.F562F 0.21 TCGA-W3-AA1V-06 19 54314277 54314277 G A NLRP12 Silent p.T212T 0.72 TCGA-W3-AA1V-06 19 54314324 54314324 C T NLRP12 Missense_Mutation p.E197K 0.74 deleterious(0.01) possibly_damaging(0.906) TCGA-W3-AA1V-06 19 54314538 54314538 G A NLRP12 Silent p.P125P 0.25 TCGA-W3-AA1V-06 19 54392915 54392915 C T PRKCG Silent p.F103F 0.64 TCGA-W3-AA1V-06 19 54481409 54481409 G A CACNG8 Missense_Mutation p.R98K 0.29 tolerated(0.63) benign(0.051) TCGA-W3-AA1V-06 19 5455862 5455862 C T ZNRF4 Silent p.F120F 0.32 TCGA-W3-AA1V-06 19 54561951 54561951 C T VSTM1 Missense_Mutation p.E24K 0.87 deleterious(0.01) possibly_damaging(0.899) TCGA-W3-AA1V-06 19 5456624 5456624 C T ZNRF4 Silent p.P374P 0.28 TCGA-W3-AA1V-06 19 5456626 5456626 C T ZNRF4 Missense_Mutation p.S375F 0.26 deleterious(0.02) possibly_damaging(0.862) TCGA-W3-AA1V-06 19 54760128 54760128 C T LILRB5 Missense_Mutation p.D145N 0.72 tolerated(0.07) benign(0.415) TCGA-W3-AA1V-06 19 54760840 54760840 C T LILRB5 Silent p.R18R 0.24 TCGA-W3-AA1V-06 19 54782909 54782909 C T LILRB2 Missense_Mutation p.G238E 0.48 deleterious(0.02) benign(0.424) TCGA-W3-AA1V-06 19 54783767 54783767 C T LILRB2 Silent p.V78V 0.74 TCGA-W3-AA1V-06 19 54783866 54783866 G A LILRB2 Silent p.V45V 0.46 TCGA-W3-AA1V-06 19 54802041 54802041 G A LILRA3 Missense_Mutation p.P383S 0.84 tolerated(1) benign(0.016) TCGA-W3-AA1V-06 19 54965776 54965776 C T LENG8 Silent p.P198P 0.85 TCGA-W3-AA1V-06 19 55014927 55014927 G A LAIR2 Missense_Mutation p.A16T 0.52 deleterious(0.02) benign(0.391) TCGA-W3-AA1V-06 19 55019157 55019157 C T LAIR2 Missense_Mutation p.P41L 0.79 tolerated(0.2) benign(0.001) TCGA-W3-AA1V-06 19 55045132 55045132 G A KIR3DX1 Silent p.V84V 0.64 TCGA-W3-AA1V-06 19 55107142 55107142 C T LILRA1 Missense_Mutation p.P234S 0.78 tolerated(0.1) possibly_damaging(0.859) TCGA-W3-AA1V-06 19 55112326 55112326 C T LILRA1 3'UTR 0.25 TCGA-W3-AA1V-06 19 55146138 55146138 C T LILRB1 Silent p.V470V 0.50 TCGA-W3-AA1V-06 19 55255261 55255261 C T KIR2DL3 Missense_Mutation p.S130F 0.64 deleterious(0.04) benign(0.166) TCGA-W3-AA1V-06 19 55286772 55286772 A G KIR2DL1 Missense_Mutation p.K176E 0.60 tolerated(0.15) benign(0.002) TCGA-W3-AA1V-06 19 55295208 55295208 C T KIR2DL1 Silent p.I330I 0.69 TCGA-W3-AA1V-06 19 55301619 55301619 C T CTB-61M7.1 RNA 0.84 TCGA-W3-AA1V-06 19 55329904 55329904 C T KIR3DL1 Missense_Mutation p.P69S 0.80 tolerated(0.22) possibly_damaging(0.558) TCGA-W3-AA1V-06 19 55340857 55340857 G A KIR3DL1 Missense_Mutation p.V348I 0.49 deleterious(0) benign(0.094) TCGA-W3-AA1V-06 19 55340899 55340899 C T KIR3DL1 Missense_Mutation p.L362F 0.74 tolerated(0.65) benign(0.025) TCGA-W3-AA1V-06 19 55396831 55396831 C T FCAR Silent p.F85F 0.58 TCGA-W3-AA1V-06 19 55435215 55435215 C T NLRP7 Missense_Mutation p.E1003K 0.84 tolerated(0.29) benign(0.027) TCGA-W3-AA1V-06 19 55447654 55447654 G A NLRP7 Missense_Mutation p.H759Y 0.82 tolerated(0.06) benign(0.014) TCGA-W3-AA1V-06 19 55451490 55451490 C T NLRP7 Missense_Mutation p.E233K 0.25 tolerated(0.08) benign(0.444) TCGA-W3-AA1V-06 19 55481401 55481401 G A NLRP2 Silent p.Q6Q 0.59 TCGA-W3-AA1V-06 19 55496572 55496572 C T NLRP2 Missense_Mutation p.L730F 0.78 tolerated(0.05) benign(0.059) TCGA-W3-AA1V-06 19 55497572 55497572 G A NLRP2 Missense_Mutation p.R752Q 0.28 tolerated(0.68) benign(0.023) TCGA-W3-AA1V-06 19 55502035 55502035 C T NLRP2 Silent p.T901T 0.31 TCGA-W3-AA1V-06 19 55685934 55685934 G A SYT5 Missense_Mutation p.P304L 0.72 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 19 55693424 55693424 C G PTPRH Missense_Mutation p.R1053T 0.50 possibly_damaging(0.481) TCGA-W3-AA1V-06 19 55865855 55865855 C T COX6B2 Missense_Mutation p.G12E 0.80 tolerated(0.56) benign(0.014) TCGA-W3-AA1V-06 19 56243960 56243960 C T NLRP9 Missense_Mutation p.G413R 0.56 tolerated(0.09) benign(0.028) TCGA-W3-AA1V-06 19 56459552 56459552 G A NLRP8 Missense_Mutation p.R95Q 0.86 tolerated(0.22) benign(0.234) TCGA-W3-AA1V-06 19 56465889 56465889 G A NLRP8 Silent p.S155S 0.76 TCGA-W3-AA1V-06 19 56511091 56511091 C T NLRP5 5'Flank 0.85 TCGA-W3-AA1V-06 19 56544982 56544982 C T NLRP5 Missense_Mutation p.S841F 0.18 tolerated(0.49) benign(0.001) TCGA-W3-AA1V-06 19 5661610 5661610 C T SAFB Silent p.A648A 0.44 TCGA-W3-AA1V-06 19 5667168 5667168 C T SAFB Missense_Mutation p.P816S 0.21 tolerated(0.1) unknown(0) TCGA-W3-AA1V-06 19 56696603 56696603 G A GALP Missense_Mutation p.M105I 0.73 tolerated_low_confidence(0.08) benign(0) TCGA-W3-AA1V-06 19 56702266 56702266 C T ZSCAN5B Missense_Mutation p.E227K 0.72 tolerated(0.13) benign(0.263) TCGA-W3-AA1V-06 19 56895142 56895142 G A ZNF582 3'UTR 0.80 TCGA-W3-AA1V-06 19 56895668 56895668 C T ZNF582 Missense_Mutation p.G373E 0.78 tolerated(0.06) probably_damaging(0.944) TCGA-W3-AA1V-06 19 56952597 56952597 C T ZNF667 Silent p.G589G 0.53 TCGA-W3-AA1V-06 19 57035941 57035941 C T ZNF471 Missense_Mutation p.H169Y 0.68 tolerated(0.77) benign(0) TCGA-W3-AA1V-06 19 57036015 57036015 A T ZNF471 Silent p.V193V 0.15 TCGA-W3-AA1V-06 19 57286181 57286181 T A ZIM2 Missense_Mutation p.T487S 0.24 tolerated(0.06) possibly_damaging(0.824) TCGA-W3-AA1V-06 19 57286718 57286718 C T ZIM2 Missense_Mutation p.E308K 0.71 tolerated(0.14) possibly_damaging(0.857) TCGA-W3-AA1V-06 19 57325937 57325937 G A PEG3 Silent p.F1291F 0.47 TCGA-W3-AA1V-06 19 5763275 5763275 G A CATSPERD Missense_Mutation p.E493K 0.32 tolerated(0.1) benign(0.117) TCGA-W3-AA1V-06 19 57641750 57641750 G A USP29 Missense_Mutation p.M569I 0.31 tolerated(0.37) benign(0.004) TCGA-W3-AA1V-06 19 57647333 57647333 C T ZIM3 Silent p.K124K 0.83 TCGA-W3-AA1V-06 19 5772937 5772937 G A CATSPERD Missense_Mutation p.M634I 0.39 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 19 57765007 57765007 C A ZNF805 Missense_Mutation p.L274I 0.44 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 19 57802264 57802264 C T ZNF460 Missense_Mutation p.H119Y 0.79 deleterious(0.02) benign(0.216) TCGA-W3-AA1V-06 19 57839791 57839791 C T ZNF543 Nonsense_Mutation p.R321* 0.43 TCGA-W3-AA1V-06 19 57868084 57868084 G A ZNF304 Missense_Mutation p.E283K 0.73 tolerated(0.05) probably_damaging(0.967) TCGA-W3-AA1V-06 19 57910553 57910553 C T ZNF548 Nonsense_Mutation p.Q312* 0.68 TCGA-W3-AA1V-06 19 58005121 58005121 T A ZNF419 Missense_Mutation p.F400Y 0.63 tolerated(1) benign(0.01) TCGA-W3-AA1V-06 19 58005402 58005402 C T ZNF419 Missense_Mutation p.R494C 0.83 deleterious(0.04) possibly_damaging(0.761) TCGA-W3-AA1V-06 19 58101376 58101376 C T ZIK1 Intron 0.90 TCGA-W3-AA1V-06 19 58102424 58102424 C T ZIK1 Silent p.S415S 0.48 TCGA-W3-AA1V-06 19 58190062 58190062 G A ZSCAN4 Missense_Mutation p.G364E 0.80 tolerated(0.87) benign(0.123) TCGA-W3-AA1V-06 19 5832440 5832440 C T FUT6 Missense_Mutation p.G47R 0.44 tolerated(0.51) benign(0.094) TCGA-W3-AA1V-06 19 58565267 58565267 G A ZSCAN1 Missense_Mutation p.E359K 0.69 tolerated(0.86) possibly_damaging(0.587) TCGA-W3-AA1V-06 19 58579246 58579246 C T ZNF135 Missense_Mutation p.P489L 0.84 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 19 58579372 58579372 C T ZNF135 Missense_Mutation p.S531L 0.27 deleterious(0.03) benign(0.033) TCGA-W3-AA1V-06 19 58596490 58596490 C T ZSCAN18 Silent p.A421A 0.27 TCGA-W3-AA1V-06 19 58596541 58596541 T A ZSCAN18 Silent p.G404G 0.65 TCGA-W3-AA1V-06 19 58598348 58598348 G C ZSCAN18 Missense_Mutation p.Q280E 0.77 tolerated(0.19) benign(0.045) TCGA-W3-AA1V-06 19 5867688 5867688 G A AC024592.12 Missense_Mutation p.S149F 0.66 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-W3-AA1V-06 19 613921 613921 C T HCN2 Missense_Mutation p.S632L 0.30 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 19 6471308 6471308 G A DENND1C Nonsense_Mutation p.R420* 0.78 TCGA-W3-AA1V-06 19 6719405 6719405 G A C3 Silent p.I28I 0.79 TCGA-W3-AA1V-06 19 6986324 6986324 G A EMR4P RNA 0.36 TCGA-W3-AA1V-06 19 6990792 6990792 G A EMR4P RNA 0.50 TCGA-W3-AA1V-06 19 758180 758180 C T MISP Missense_Mutation p.P412S 0.27 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 19 7585112 7585112 C T ZNF358 Silent p.F328F 0.50 TCGA-W3-AA1V-06 19 7590035 7590035 C T MCOLN1 Silent p.L74L 0.32 TCGA-W3-AA1V-06 19 761631 761631 G A MISP Missense_Mutation p.G640S 0.59 tolerated(0.16) possibly_damaging(0.737) TCGA-W3-AA1V-06 19 7805355 7805355 G A CD209 3'UTR 0.64 TCGA-W3-AA1V-06 19 7828170 7828170 A G CLEC4M Silent p.E6E 0.50 TCGA-W3-AA1V-06 19 7828192 7828192 C T CLEC4M Missense_Mutation p.L14F 0.55 tolerated(0.47) probably_damaging(0.993) TCGA-W3-AA1V-06 19 7964760 7964760 C T LRRC8E Silent p.T451T 0.65 TCGA-W3-AA1V-06 19 8121067 8121067 C T CCL25 Silent p.H35H 0.68 TCGA-W3-AA1V-06 19 8136942 8136942 C T FBN3 Missense_Mutation p.R2693K 0.40 tolerated(0.57) benign(0.013) TCGA-W3-AA1V-06 19 8167758 8167758 C T FBN3 Splice_Site p.X1647_splice 0.28 TCGA-W3-AA1V-06 19 8196529 8196529 G A FBN3 Silent p.F633F 0.34 TCGA-W3-AA1V-06 19 8200941 8200941 G A FBN3 Missense_Mutation p.L499F 0.50 deleterious(0) probably_damaging(0.93) TCGA-W3-AA1V-06 19 8436125 8436125 G A ANGPTL4 Missense_Mutation p.G253D 0.23 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 19 8564178 8564178 C T PRAM1 Missense_Mutation p.E172K 0.74 tolerated(0.1) probably_damaging(0.987) TCGA-W3-AA1V-06 19 8615543 8615543 G A MYO1F Silent p.I269I 0.75 TCGA-W3-AA1V-06 19 8645836 8645836 G A ADAMTS10 Nonsense_Mutation p.Q1085* 0.65 TCGA-W3-AA1V-06 19 8656963 8656963 G A ADAMTS10 Missense_Mutation p.P538S 0.65 tolerated(0.07) possibly_damaging(0.521) TCGA-W3-AA1V-06 19 8668636 8668636 G A ADAMTS10 Silent p.L190L 0.75 TCGA-W3-AA1V-06 19 8808307 8808307 C G ACTL9 Missense_Mutation p.D249H 0.18 tolerated(0.44) possibly_damaging(0.564) TCGA-W3-AA1V-06 19 8808308 8808308 C T ACTL9 Silent p.L248L 0.18 TCGA-W3-AA1V-06 19 8922625 8922625 C T ZNF558 Missense_Mutation p.D181N 0.37 deleterious(0.01) possibly_damaging(0.724) TCGA-W3-AA1V-06 19 8962016 8962016 G A MUC16 Missense_Mutation p.A14454V 0.29 possibly_damaging(0.552) TCGA-W3-AA1V-06 19 8999506 8999506 G A MUC16 Missense_Mutation p.P13557S 0.45 probably_damaging(0.975) TCGA-W3-AA1V-06 19 9003580 9003580 C T MUC16 Missense_Mutation p.V13354I 0.23 possibly_damaging(0.83) TCGA-W3-AA1V-06 19 9008202 9008202 G A MUC16 Missense_Mutation p.T13117I 0.76 possibly_damaging(0.889) TCGA-W3-AA1V-06 19 9015718 9015718 G A MUC16 Missense_Mutation p.T12702I 0.73 possibly_damaging(0.535) TCGA-W3-AA1V-06 19 9019321 9019321 C T MUC16 Silent p.V12522V 0.48 TCGA-W3-AA1V-06 19 9025644 9025644 G A MUC16 Silent p.F12270F 0.28 TCGA-W3-AA1V-06 19 9045755 9045755 C T MUC16 Missense_Mutation p.G11959E 0.74 benign(0.007) TCGA-W3-AA1V-06 19 9046424 9046424 G A MUC16 Missense_Mutation p.S11736L 0.63 benign(0.101) TCGA-W3-AA1V-06 19 9048508 9048508 C T MUC16 Silent p.V11041V 0.41 TCGA-W3-AA1V-06 19 9049714 9049714 G A MUC16 Silent p.A10639A 0.24 TCGA-W3-AA1V-06 19 9057033 9057033 G A MUC16 Missense_Mutation p.S10138F 0.56 benign(0.293) TCGA-W3-AA1V-06 19 9057409 9057409 G A MUC16 Missense_Mutation p.L10013F 0.29 unknown(0) TCGA-W3-AA1V-06 19 9059878 9059878 C T MUC16 Missense_Mutation p.G9190S 0.80 unknown(0) TCGA-W3-AA1V-06 19 9060177 9060177 G A MUC16 Missense_Mutation p.S9090L 0.46 unknown(0) TCGA-W3-AA1V-06 19 9063621 9063621 G A MUC16 Missense_Mutation p.S7942L 0.78 unknown(0) TCGA-W3-AA1V-06 19 9064929 9064929 G A MUC16 Missense_Mutation p.S7506L 0.74 unknown(0) TCGA-W3-AA1V-06 19 9065449 9065449 G A MUC16 Missense_Mutation p.P7333S 0.70 unknown(0) TCGA-W3-AA1V-06 19 9066584 9066584 T G MUC16 Missense_Mutation p.R6954S 0.33 unknown(0) TCGA-W3-AA1V-06 19 9066642 9066642 G A MUC16 Missense_Mutation p.S6935F 0.67 unknown(0) TCGA-W3-AA1V-06 19 9067521 9067521 G A MUC16 Missense_Mutation p.S6642F 0.77 unknown(0) TCGA-W3-AA1V-06 19 9068506 9068506 C T MUC16 Missense_Mutation p.E6314K 0.72 unknown(0) TCGA-W3-AA1V-06 19 9068660 9068660 G A MUC16 Silent p.I6262I 0.62 TCGA-W3-AA1V-06 19 9069264 9069264 G A MUC16 Missense_Mutation p.P6061L 0.34 unknown(0) TCGA-W3-AA1V-06 19 9073306 9073306 C T MUC16 Missense_Mutation p.G4714R 0.67 unknown(0) TCGA-W3-AA1V-06 19 9077378 9077378 C T MUC16 Silent p.G3356G 0.72 TCGA-W3-AA1V-06 19 9077580 9077580 G A MUC16 Missense_Mutation p.P3289L 0.71 unknown(0) TCGA-W3-AA1V-06 19 9083541 9083541 G A MUC16 Silent p.S2758S 0.44 TCGA-W3-AA1V-06 19 9086360 9086360 G A MUC16 Missense_Mutation p.P1819S 0.66 unknown(0) TCGA-W3-AA1V-06 19 9091248 9091248 G A MUC16 Silent p.I189I 0.73 TCGA-W3-AA1V-06 19 9091639 9091639 G A MUC16 Missense_Mutation p.S59F 0.32 unknown(0) TCGA-W3-AA1V-06 19 9213884 9213884 G A OR7G2 Silent p.F33F 0.28 TCGA-W3-AA1V-06 19 9296508 9296508 C T OR7D2 Silent p.L17L 0.37 TCGA-W3-AA1V-06 19 9297085 9297085 C T OR7D2 Missense_Mutation p.P210S 0.34 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-W3-AA1V-06 19 9325010 9325010 G A OR7D4 Silent p.F168F 0.67 TCGA-W3-AA1V-06 19 9362719 9362719 C T OR7E24 Missense_Mutation p.P334S 0.38 deleterious_low_confidence(0.02) benign(0.108) TCGA-W3-AA1V-06 19 964288 964288 C T ARID3A Silent p.V269V 0.30 TCGA-W3-AA1V-06 19 9721006 9721006 G A ZNF561 Missense_Mutation p.T444I 0.31 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 1 100963745 100963745 C T CDC14A Missense_Mutation p.S468L 0.27 tolerated(0.13) benign(0.005) TCGA-W3-AA1V-06 1 10204995 10204995 C T UBE4B Intron 0.21 TCGA-W3-AA1V-06 1 10239580 10239580 C T UBE4B Silent p.P1269P 0.47 TCGA-W3-AA1V-06 1 104162256 104162256 G A AMY2A Missense_Mutation p.M198I 0.13 tolerated(0.06) benign(0.041) TCGA-W3-AA1V-06 1 104297131 104297131 G A AMY1C Missense_Mutation p.E297K 0.06 tolerated(0.1) benign(0.107) TCGA-W3-AA1V-06 1 10478932 10478932 C T PGD Nonsense_Mutation p.Q387* 0.21 TCGA-W3-AA1V-06 1 10493999 10493999 C T APITD1 Missense_Mutation p.S51L 0.25 deleterious(0.03) possibly_damaging(0.8) TCGA-W3-AA1V-06 1 10511565 10511565 G A CORT Silent p.Q77Q 0.48 TCGA-W3-AA1V-06 1 109553673 109553673 G A WDR47 Missense_Mutation p.S339L 0.27 tolerated(0.41) benign(0) TCGA-W3-AA1V-06 1 109648684 109648684 G A C1orf194 Missense_Mutation p.S147F 0.59 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 11008085 11008085 G A C1orf127 Missense_Mutation p.P703S 0.20 tolerated(0.07) possibly_damaging(0.827) TCGA-W3-AA1V-06 1 110151365 110151365 C A GNAT2 Nonsense_Mutation p.G117* 0.27 TCGA-W3-AA1V-06 1 110172954 110172954 C T AMPD2 Silent p.L749L 0.55 TCGA-W3-AA1V-06 1 110257769 110257769 C T GSTM5 Silent p.F158F 0.30 TCGA-W3-AA1V-06 1 110293295 110293295 C T EPS8L3 Missense_Mutation p.R587K 0.12 tolerated(0.45) benign(0.05) TCGA-W3-AA1V-06 1 110466392 110466392 C T CSF1 Silent p.T383T 0.54 TCGA-W3-AA1V-06 1 110560579 110560579 T A AHCYL1 Missense_Mutation p.F355Y 0.49 tolerated(0.81) benign(0.14) TCGA-W3-AA1V-06 1 110740984 110740984 C T SLC6A17 Missense_Mutation p.S701L 0.46 tolerated_low_confidence(0.21) benign(0.196) TCGA-W3-AA1V-06 1 110766050 110766050 C T KCNC4 Silent p.F381F 0.20 TCGA-W3-AA1V-06 1 11106668 11106668 G A MASP2 Silent p.S119S 0.25 TCGA-W3-AA1V-06 1 111434987 111434987 G A CD53 Silent p.L28L 0.49 TCGA-W3-AA1V-06 1 111861853 111861853 G A CHIA Missense_Mutation p.D343N 0.25 tolerated(0.42) benign(0.001) TCGA-W3-AA1V-06 1 11194431 11194431 C T MTOR Silent p.Q1741Q 0.30 TCGA-W3-AA1V-06 1 112020306 112020306 C T C1orf162 Missense_Mutation p.P79L 0.26 deleterious(0.01) benign(0.061) TCGA-W3-AA1V-06 1 11227549 11227549 C T MTOR Missense_Mutation p.E1427K 0.56 deleterious(0.01) benign(0.202) TCGA-W3-AA1V-06 1 112308535 112308535 A G DDX20 Missense_Mutation p.R497G 0.26 tolerated(0.21) benign(0.075) TCGA-W3-AA1V-06 1 11249909 11249909 G A ANGPTL7 Missense_Mutation p.M91I 0.54 tolerated(0.21) benign(0.007) TCGA-W3-AA1V-06 1 11307930 11307930 G A MTOR Silent p.S354S 0.27 TCGA-W3-AA1V-06 1 11317187 11317187 G C MTOR Missense_Mutation p.R103G 0.24 deleterious(0) benign(0.41) TCGA-W3-AA1V-06 1 113269283 113269283 G A FAM19A3 Missense_Mutation p.G164E 0.19 deleterious_low_confidence(0) benign(0.079) TCGA-W3-AA1V-06 1 114157255 114157255 C T MAGI3 Missense_Mutation p.P351S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 114196614 114196614 C T MAGI3 Missense_Mutation p.T868I 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 114240939 114240939 A G PHTF1 Missense_Mutation p.V738A 0.14 deleterious(0) possibly_damaging(0.885) TCGA-W3-AA1V-06 1 114252977 114252977 G A PHTF1 Missense_Mutation p.P390S 0.45 tolerated(0.3) possibly_damaging(0.607) TCGA-W3-AA1V-06 1 114252978 114252978 G A PHTF1 Silent p.G389G 0.45 TCGA-W3-AA1V-06 1 114354921 114354921 G A RSBN1 Silent p.V38V 0.13 TCGA-W3-AA1V-06 1 114423684 114423684 A G BCL2L15 3'UTR 0.33 TCGA-W3-AA1V-06 1 114442506 114442506 G A AP4B1 Intron 0.56 TCGA-W3-AA1V-06 1 114454090 114454090 C T DCLRE1B Silent p.C292C 0.17 TCGA-W3-AA1V-06 1 1148411 1148411 C T TNFRSF4 Missense_Mutation p.A111T 0.19 deleterious(0) benign(0.032) TCGA-W3-AA1V-06 1 115161025 115161025 C T DENND2C Missense_Mutation p.E436K 0.18 deleterious(0.02) benign(0.01) TCGA-W3-AA1V-06 1 115168422 115168422 G A DENND2C Missense_Mutation p.P62S 0.27 tolerated(0.35) benign(0.005) TCGA-W3-AA1V-06 1 115269623 115269623 G A CSDE1 Missense_Mutation p.S528F 0.19 tolerated(0.7) benign(0.005) TCGA-W3-AA1V-06 1 115454165 115454165 A C SYCP1 Missense_Mutation p.K497N 0.46 tolerated(0.15) benign(0.026) TCGA-W3-AA1V-06 1 115488919 115488919 G A SYCP1 Missense_Mutation p.D722N 0.25 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 1 11561609 11561609 G A PTCHD2 Missense_Mutation p.R187Q 0.37 tolerated_low_confidence(0.44) benign(0.006) TCGA-W3-AA1V-06 1 11575530 11575530 G A PTCHD2 Missense_Mutation p.G520R 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-W3-AA1V-06 1 11575531 11575531 G A PTCHD2 Missense_Mutation p.G520E 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-W3-AA1V-06 1 115829046 115829046 G A NGF Missense_Mutation p.S124F 0.26 deleterious(0.01) benign(0.224) TCGA-W3-AA1V-06 1 11596664 11596664 G A PTCHD2 Missense_Mutation p.G1367E 0.33 tolerated(0.1) possibly_damaging(0.748) TCGA-W3-AA1V-06 1 116574250 116574250 G A SLC22A15 Intron 0.32 TCGA-W3-AA1V-06 1 117297147 117297147 C T CD2 Silent p.F11F 0.48 TCGA-W3-AA1V-06 1 11736126 11736126 G A MAD2L2 Missense_Mutation p.A135V 0.21 deleterious(0) benign(0.437) TCGA-W3-AA1V-06 1 117503988 117503988 C T PTGFRN Missense_Mutation p.S446L 0.22 deleterious(0) possibly_damaging(0.756) TCGA-W3-AA1V-06 1 117631511 117631511 C T TTF2 Missense_Mutation p.S750F 0.63 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 1 118045588 118045588 T A MAN1A2 Missense_Mutation p.L597I 0.24 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1V-06 1 118165788 118165788 C T FAM46C Missense_Mutation p.P100S 0.57 tolerated(0.72) benign(0.077) TCGA-W3-AA1V-06 1 118165836 118165836 C T FAM46C Missense_Mutation p.L116F 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 1 118476036 118476036 C T WDR3 Missense_Mutation p.R32C 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-W3-AA1V-06 1 118554939 118554939 C T SPAG17 Silent p.R1448R 0.56 TCGA-W3-AA1V-06 1 118558689 118558689 T C SPAG17 Missense_Mutation p.T1396A 0.48 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 11860327 11860327 C T MTHFR Silent p.V176V 0.50 TCGA-W3-AA1V-06 1 11918768 11918768 G A NPPB Silent p.S41S 0.26 TCGA-W3-AA1V-06 1 119427567 119427567 C T TBX15 Missense_Mutation p.E427K 0.24 deleterious(0.03) benign(0.437) TCGA-W3-AA1V-06 1 119428089 119428089 G A TBX15 Missense_Mutation p.P253S 0.43 tolerated(0.07) probably_damaging(0.996) TCGA-W3-AA1V-06 1 120165391 120165391 G A ZNF697 Silent p.G525G 0.27 TCGA-W3-AA1V-06 1 12025551 12025551 C T PLOD1 Silent p.F495F 0.20 TCGA-W3-AA1V-06 1 120311476 120311476 G A HMGCS2 5'UTR 0.26 TCGA-W3-AA1V-06 1 120437752 120437752 C T ADAM30 Missense_Mutation p.G403E 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 120461985 120461985 G A NOTCH2 Missense_Mutation p.R1911C 0.60 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 120539760 120539760 G A NOTCH2 Missense_Mutation p.S204F 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 12089181 12089181 T C MIIP Silent p.C213C 0.22 TCGA-W3-AA1V-06 1 12090121 12090121 C T MIIP Silent p.H294H 0.18 TCGA-W3-AA1V-06 1 12198328 12198328 G A TNFRSF8 Missense_Mutation p.E460K 0.18 tolerated(0.29) benign(0.055) TCGA-W3-AA1V-06 1 1222236 1222236 G A SCNN1D Missense_Mutation p.G334S 0.21 tolerated(0.43) benign(0.018) TCGA-W3-AA1V-06 1 1222549 1222549 C T SCNN1D Nonsense_Mutation p.Q394* 0.14 TCGA-W3-AA1V-06 1 12381957 12381957 C T VPS13D Missense_Mutation p.S2547F 0.17 possibly_damaging(0.466) TCGA-W3-AA1V-06 1 12785633 12785633 T C AADACL3 Silent p.G241G 0.51 TCGA-W3-AA1V-06 1 12820770 12820770 G A C1orf158 Silent p.L157L 0.85 TCGA-W3-AA1V-06 1 12834995 12834995 C T PRAMEF12 5'UTR 0.21 TCGA-W3-AA1V-06 1 12835692 12835692 G A PRAMEF12 Nonsense_Mutation p.W98* 0.25 TCGA-W3-AA1V-06 1 12837847 12837847 G A PRAMEF12 3'UTR 0.89 TCGA-W3-AA1V-06 1 12885085 12885085 G A PRAMEF11 Silent p.T342T 0.17 TCGA-W3-AA1V-06 1 12885141 12885141 C T PRAMEF11 Missense_Mutation p.D324N 0.43 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 12885303 12885303 C T PRAMEF11 Missense_Mutation p.D270N 0.25 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 1 12887229 12887229 G A PRAMEF11 Missense_Mutation p.P210S 0.42 tolerated(0.36) benign(0.026) TCGA-W3-AA1V-06 1 1290456 1290456 G A MXRA8 Silent p.T185T 0.50 TCGA-W3-AA1V-06 1 12908161 12908161 T A HNRNPCL1 5'UTR 0.20 TCGA-W3-AA1V-06 1 12921104 12921104 G A PRAMEF2 Missense_Mutation p.E299K 0.21 tolerated(0.06) benign(0.385) TCGA-W3-AA1V-06 1 12921157 12921157 C T PRAMEF2 Silent p.F316F 0.55 TCGA-W3-AA1V-06 1 12921323 12921323 G A PRAMEF2 Missense_Mutation p.G372S 0.47 tolerated(0.13) benign(0.22) TCGA-W3-AA1V-06 1 12939463 12939463 A G PRAMEF4 Silent p.L447L 0.28 TCGA-W3-AA1V-06 1 12941704 12941704 G T PRAMEF4 Missense_Mutation p.F282L 0.21 tolerated(0.06) benign(0.027) TCGA-W3-AA1V-06 1 12942930 12942930 G A PRAMEF4 Missense_Mutation p.R96C 0.35 tolerated(0.08) benign(0.009) TCGA-W3-AA1V-06 1 12979744 12979744 C T PRAMEF7 Silent p.L312L 0.16 TCGA-W3-AA1V-06 1 13001260 13001260 C T PRAMEF6 Missense_Mutation p.M141I 0.09 tolerated(0.46) benign(0.017) TCGA-W3-AA1V-06 1 13001359 13001359 G A PRAMEF6 Silent p.V108V 0.08 TCGA-W3-AA1V-06 1 1322586 1322586 G A CCNL2 3'UTR 0.19 TCGA-W3-AA1V-06 1 1322587 1322587 G A CCNL2 3'UTR 0.19 TCGA-W3-AA1V-06 1 13475210 13475210 C T PRAMEF18 Missense_Mutation p.E307K 0.25 deleterious(0.01) benign(0.002) TCGA-W3-AA1V-06 1 13718941 13718941 G A PRAMEF17 Silent p.V468V 0.46 TCGA-W3-AA1V-06 1 1387478 1387478 A G ATAD3C Missense_Mutation p.H43R 0.61 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 1 13910381 13910381 C T PDPN Silent p.S27S 0.28 TCGA-W3-AA1V-06 1 14109199 14109199 T C PRDM2 Missense_Mutation p.F1637L 0.20 unknown(0) TCGA-W3-AA1V-06 1 1425754 1425754 G A ATAD3B Silent p.V485V 0.57 TCGA-W3-AA1V-06 1 142713597 142713597 C T RP11-417J8.6 RNA 0.12 TCGA-W3-AA1V-06 1 144892259 144892259 G A PDE4DIP Intron 0.27 TCGA-W3-AA1V-06 1 144917531 144917531 C T PDE4DIP Missense_Mutation p.D525N 0.25 tolerated(0.7) benign(0.065) TCGA-W3-AA1V-06 1 145075735 145075735 G A PDE4DIP Missense_Mutation p.P43L 0.09 tolerated_low_confidence(0.2) probably_damaging(0.967) TCGA-W3-AA1V-06 1 145103957 145103957 G A SEC22B RNA 0.16 TCGA-W3-AA1V-06 1 145112380 145112380 C T SEC22B RNA 0.13 TCGA-W3-AA1V-06 1 145115908 145115908 T C SEC22B RNA 0.10 TCGA-W3-AA1V-06 1 145281564 145281564 C T NOTCH2NL Missense_Mutation p.S165F 0.05 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 145415479 145415479 G A HFE2 Missense_Mutation p.D100N 0.26 tolerated(0.63) possibly_damaging(0.553) TCGA-W3-AA1V-06 1 145438736 145438736 C T TXNIP 5'UTR 0.23 TCGA-W3-AA1V-06 1 145704094 145704094 C T CD160 Missense_Mutation p.G108E 0.28 tolerated(0.1) benign(0.403) TCGA-W3-AA1V-06 1 146765322 146765322 C T CHD1L Missense_Mutation p.R808C 0.22 tolerated(0.08) benign(0.021) TCGA-W3-AA1V-06 1 147084804 147084804 C T BCL9 Missense_Mutation p.S59F 0.29 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 1 147096483 147096483 C T BCL9 Missense_Mutation p.S1335L 0.40 tolerated(0.06) benign(0.141) TCGA-W3-AA1V-06 1 147380211 147380211 C T GJA8 Silent p.F43F 0.29 TCGA-W3-AA1V-06 1 147380419 147380419 G A GJA8 Missense_Mutation p.E113K 0.28 tolerated(0.28) benign(0.017) TCGA-W3-AA1V-06 1 147380505 147380505 C T GJA8 Silent p.F141F 0.54 TCGA-W3-AA1V-06 1 147955181 147955181 C T PPIAL4A Missense_Mutation p.R55K 0.19 deleterious_low_confidence(0.03) benign(0.401) TCGA-W3-AA1V-06 1 148343706 148343706 G A NBPF20 Silent p.L127L 0.15 TCGA-W3-AA1V-06 1 148343708 148343708 G A NBPF20 Missense_Mutation p.L127F 0.20 possibly_damaging(0.598) TCGA-W3-AA1V-06 1 148932869 148932869 G C RP11-14N7.2 RNA 0.07 TCGA-W3-AA1V-06 1 148932873 148932873 A G RP11-14N7.2 RNA 0.07 TCGA-W3-AA1V-06 1 149762805 149762805 C T FCGR1A Missense_Mutation p.P286L 0.38 tolerated(0.27) benign(0.006) TCGA-W3-AA1V-06 1 149858223 149858223 G A HIST2H2BE 5'UTR 0.30 TCGA-W3-AA1V-06 1 150131515 150131515 C T PLEKHO1 Missense_Mutation p.P343S 0.61 tolerated(0.64) benign(0.038) TCGA-W3-AA1V-06 1 150318887 150318887 C T PRPF3 Missense_Mutation p.P588L 0.33 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 1 150429882 150429882 C TA RPRD2 Frame_Shift_Ins p.S330Lfs*6 0.22 TCGA-W3-AA1V-06 1 150430042 150430042 C T RPRD2 Silent p.I383I 0.23 TCGA-W3-AA1V-06 1 150529183 150529183 T C ADAMTSL4 Missense_Mutation p.F555L 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 150531134 150531134 G A ADAMTSL4 Intron 0.28 TCGA-W3-AA1V-06 1 150531135 150531135 G A ADAMTSL4 Intron 0.32 TCGA-W3-AA1V-06 1 150957092 150957092 G A ANXA9 Missense_Mutation p.E138K 0.54 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 1 150960409 150960409 G A ANXA9 Missense_Mutation p.R225Q 0.19 tolerated(0.06) probably_damaging(1) TCGA-W3-AA1V-06 1 151015595 151015595 G A BNIPL Silent p.K199K 0.26 TCGA-W3-AA1V-06 1 151089951 151089951 C T GABPB2 Missense_Mutation p.P336S 0.20 tolerated(0.72) benign(0.15) TCGA-W3-AA1V-06 1 151259763 151259763 C T ZNF687 Silent p.I332I 0.32 TCGA-W3-AA1V-06 1 151276089 151276089 G A PI4KB Missense_Mutation p.S495F 0.25 deleterious(0.02) probably_damaging(0.978) TCGA-W3-AA1V-06 1 151774499 151774499 C T LINGO4 Missense_Mutation p.G228R 0.23 tolerated(0.35) probably_damaging(0.921) TCGA-W3-AA1V-06 1 151860784 151860784 G A THEM4 Silent p.I174I 0.22 TCGA-W3-AA1V-06 1 152057538 152057538 C T TCHHL1 Missense_Mutation p.E874K 0.23 tolerated(0.21) benign(0.007) TCGA-W3-AA1V-06 1 152057737 152057737 C T TCHHL1 Silent p.E807E 0.46 TCGA-W3-AA1V-06 1 152058081 152058081 C T TCHHL1 Missense_Mutation p.G693R 0.27 tolerated(0.07) benign(0.117) TCGA-W3-AA1V-06 1 152059143 152059143 C T TCHHL1 Missense_Mutation p.D339N 0.26 tolerated(0.11) benign(0.132) TCGA-W3-AA1V-06 1 152081654 152081654 C T TCHH Missense_Mutation p.E1347K 0.25 unknown(0) TCGA-W3-AA1V-06 1 152127257 152127257 C T RPTN Missense_Mutation p.R773K 0.46 tolerated(0.05) benign(0.036) TCGA-W3-AA1V-06 1 152192087 152192087 G A HRNR Missense_Mutation p.S673F 0.56 unknown(0) TCGA-W3-AA1V-06 1 152282959 152282959 G A FLG Missense_Mutation p.S1468F 0.30 possibly_damaging(0.485) TCGA-W3-AA1V-06 1 152284462 152284462 G A FLG Missense_Mutation p.S967F 0.25 probably_damaging(0.979) TCGA-W3-AA1V-06 1 152285916 152285916 A T FLG Missense_Mutation p.H482Q 0.27 possibly_damaging(0.613) TCGA-W3-AA1V-06 1 152323852 152323852 C T FLG2 Missense_Mutation p.G2137E 0.52 benign(0.177) TCGA-W3-AA1V-06 1 152326553 152326553 C T FLG2 Missense_Mutation p.E1237K 0.23 unknown(0) TCGA-W3-AA1V-06 1 152328110 152328110 C T FLG2 Missense_Mutation p.G718R 0.46 unknown(0) TCGA-W3-AA1V-06 1 152636858 152636858 G A LCE2D Missense_Mutation p.E93K 0.51 tolerated_low_confidence(0.08) unknown(0) TCGA-W3-AA1V-06 1 152975744 152975744 C T SPRR3 Missense_Mutation p.T83I 0.31 deleterious(0.03) possibly_damaging(0.73) TCGA-W3-AA1V-06 1 153043192 153043192 G A SPRR2B Missense_Mutation p.P42S 0.26 tolerated_low_confidence(0.32) unknown(0) TCGA-W3-AA1V-06 1 153066006 153066006 C T SPRR2E 3'UTR 0.24 TCGA-W3-AA1V-06 1 153084962 153084962 T C SPRR2F 3'UTR 0.30 TCGA-W3-AA1V-06 1 153303395 153303395 C T PGLYRP4 Missense_Mutation p.E324K 0.37 tolerated(0.19) possibly_damaging(0.663) TCGA-W3-AA1V-06 1 153410791 153410791 T C S100A7L2 Silent p.L16L 0.34 TCGA-W3-AA1V-06 1 153599002 153599002 G A S100A13 5'UTR 0.12 TCGA-W3-AA1V-06 1 153599003 153599003 G A S100A13 5'UTR 0.14 TCGA-W3-AA1V-06 1 153954740 153954740 G A RAB13 Intron 0.62 TCGA-W3-AA1V-06 1 154098882 154098882 C T NUP210L Missense_Mutation p.V415M 0.49 tolerated(0.17) benign(0.207) TCGA-W3-AA1V-06 1 154232423 154232423 G A UBAP2L Splice_Site p.X833_splice 0.31 TCGA-W3-AA1V-06 1 154321536 154321536 A T ATP8B2 Missense_Mutation p.K1205M 0.54 deleterious(0) unknown(0) TCGA-W3-AA1V-06 1 154493949 154493949 C G TDRD10 Silent p.A121A 0.50 TCGA-W3-AA1V-06 1 154493950 154493950 C T TDRD10 Missense_Mutation p.P122S 0.49 tolerated(0.2) benign(0.026) TCGA-W3-AA1V-06 1 154680441 154680441 G A KCNN3 3'UTR 0.29 TCGA-W3-AA1V-06 1 154744610 154744610 G A KCNN3 Missense_Mutation p.T430I 0.31 deleterious(0.02) possibly_damaging(0.73) TCGA-W3-AA1V-06 1 154744864 154744864 G A KCNN3 Silent p.F345F 0.12 TCGA-W3-AA1V-06 1 154956337 154956337 C T FLAD1 Missense_Mutation p.P56L 0.37 deleterious_low_confidence(0) benign(0.004) TCGA-W3-AA1V-06 1 154989020 154989020 C T ZBTB7B Silent p.T527T 0.33 TCGA-W3-AA1V-06 1 154996951 154996951 C T DCST2 Missense_Mutation p.S580N 0.48 tolerated(0.38) benign(0.003) TCGA-W3-AA1V-06 1 155154356 155154356 G A TRIM46 Nonsense_Mutation p.W539* 0.16 TCGA-W3-AA1V-06 1 155182005 155182005 G A MTX1 Missense_Mutation p.V256M 0.31 tolerated(0.05) benign(0.378) TCGA-W3-AA1V-06 1 155253891 155253891 C T HCN3 Missense_Mutation p.P279S 0.69 deleterious(0.01) probably_damaging(0.991) TCGA-W3-AA1V-06 1 155271226 155271226 A T PKLR 5'Flank 0.25 TCGA-W3-AA1V-06 1 155294186 155294186 C T RUSC1 Intron 0.28 TCGA-W3-AA1V-06 1 155629905 155629905 G A YY1AP1 Missense_Mutation p.S737F 0.31 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-W3-AA1V-06 1 155734686 155734686 G A GON4L Intron 0.18 TCGA-W3-AA1V-06 1 156011755 156011755 G A UBQLN4 Silent p.S458S 0.29 TCGA-W3-AA1V-06 1 156040017 156040017 G A RAB25 Missense_Mutation p.S194N 0.36 tolerated_low_confidence(0.53) benign(0) TCGA-W3-AA1V-06 1 156046437 156046437 G A MEX3A Silent p.I497I 0.51 TCGA-W3-AA1V-06 1 156248725 156248725 A G SMG5 Splice_Site p.X58_splice 0.27 TCGA-W3-AA1V-06 1 156278859 156278859 G A CCT3 3'UTR 0.69 TCGA-W3-AA1V-06 1 156352387 156352387 G A RHBG Intron 0.33 TCGA-W3-AA1V-06 1 1563693 1563693 G C MIB2 Missense_Mutation p.D743H 0.14 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 1 156534409 156534409 G A IQGAP3 Silent p.L145L 0.25 TCGA-W3-AA1V-06 1 156639596 156639596 A - NES Frame_Shift_Del p.S1462Lfs*2 0.21 TCGA-W3-AA1V-06 1 156640081 156640081 G A NES Missense_Mutation p.P1300L 0.19 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 1 156640489 156640489 G A NES Missense_Mutation p.P1164L 0.55 tolerated(0.18) benign(0.036) TCGA-W3-AA1V-06 1 156640490 156640490 G C NES Missense_Mutation p.P1164A 0.55 deleterious(0.05) possibly_damaging(0.556) TCGA-W3-AA1V-06 1 156845437 156845437 C T NTRK1 Missense_Mutation p.P494S 0.14 deleterious(0.01) possibly_damaging(0.886) TCGA-W3-AA1V-06 1 156926341 156926341 G A ARHGEF11 Silent p.F514F 0.59 TCGA-W3-AA1V-06 1 157490984 157490984 G A FCRL5 Missense_Mutation p.P780S 0.19 deleterious(0.02) probably_damaging(0.912) TCGA-W3-AA1V-06 1 157548317 157548317 C T FCRL4 Missense_Mutation p.G459E 0.21 tolerated(0.65) benign(0.003) TCGA-W3-AA1V-06 1 157559079 157559079 G A FCRL4 Silent p.T74T 0.23 TCGA-W3-AA1V-06 1 157648615 157648615 T A FCRL3 Missense_Mutation p.K697M 0.48 deleterious(0) probably_damaging(0.962) TCGA-W3-AA1V-06 1 157667085 157667085 C T FCRL3 Missense_Mutation p.R230K 0.61 tolerated(0.21) benign(0.268) TCGA-W3-AA1V-06 1 157668360 157668360 C T FCRL3 Missense_Mutation p.E38K 0.42 tolerated(0.1) benign(0.026) TCGA-W3-AA1V-06 1 157738301 157738301 G A FCRL2 Silent p.I262I 0.19 TCGA-W3-AA1V-06 1 157738338 157738338 T A FCRL2 Missense_Mutation p.K250M 0.35 tolerated(0.12) benign(0.065) TCGA-W3-AA1V-06 1 157771841 157771841 C T FCRL1 Silent p.G250G 0.42 TCGA-W3-AA1V-06 1 15817856 15817856 G A CELA2B 3'UTR 0.29 TCGA-W3-AA1V-06 1 158224366 158224366 G A CD1A 5'UTR 0.31 TCGA-W3-AA1V-06 1 158226808 158226808 G A CD1A Silent p.R279R 0.22 TCGA-W3-AA1V-06 1 158226809 158226809 G A CD1A Missense_Mutation p.V280M 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA1V-06 1 158259900 158259900 G A CD1C Missense_Mutation p.G16S 0.23 tolerated(0.19) benign(0.282) TCGA-W3-AA1V-06 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.29 deleterious(0.05) benign(0.049) TCGA-W3-AA1V-06 1 158263288 158263288 C T CD1C 3'UTR 0.48 TCGA-W3-AA1V-06 1 158298797 158298797 G A CD1B Silent p.P298P 0.22 TCGA-W3-AA1V-06 1 158300748 158300748 G A CD1B Missense_Mutation p.H56Y 0.31 deleterious(0.03) possibly_damaging(0.67) TCGA-W3-AA1V-06 1 15831125 15831125 G A CASP9 Silent p.F283F 0.35 TCGA-W3-AA1V-06 1 158324376 158324376 C T CD1E Silent p.L90L 0.26 TCGA-W3-AA1V-06 1 158325195 158325195 C T CD1E Missense_Mutation p.S154F 0.43 deleterious(0) possibly_damaging(0.743) TCGA-W3-AA1V-06 1 158369205 158369205 A T OR10T2 Missense_Mutation p.F18I 0.19 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 158389898 158389898 G A OR10K2 Silent p.G253G 0.54 TCGA-W3-AA1V-06 1 158435613 158435613 C T OR10K1 Nonsense_Mutation p.Q88* 0.49 TCGA-W3-AA1V-06 1 158436079 158436079 C T OR10K1 Missense_Mutation p.S243F 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 158516931 158516931 G A OR6Y1 Missense_Mutation p.A322V 0.30 tolerated_low_confidence(0.12) benign(0.016) TCGA-W3-AA1V-06 1 158576270 158576270 C T OR10Z1 Silent p.F14F 0.51 TCGA-W3-AA1V-06 1 158576462 158576462 C T OR10Z1 Silent p.I78I 0.27 TCGA-W3-AA1V-06 1 158604407 158604407 C G SPTA1 Missense_Mutation p.E1831Q 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 158606464 158606464 C T SPTA1 Silent p.E1759E 0.51 TCGA-W3-AA1V-06 1 158612294 158612294 G A SPTA1 Silent p.V1548V 0.12 TCGA-W3-AA1V-06 1 158615366 158615366 G T SPTA1 Silent p.I1305I 0.55 TCGA-W3-AA1V-06 1 158622355 158622355 C T SPTA1 Missense_Mutation p.D1093N 0.28 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 1 158648227 158648227 G A SPTA1 Missense_Mutation p.A259V 0.33 tolerated(0.19) benign(0.098) TCGA-W3-AA1V-06 1 158651443 158651443 C T SPTA1 Silent p.E135E 0.22 TCGA-W3-AA1V-06 1 158653237 158653237 G A SPTA1 Missense_Mutation p.S105L 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 1 158687816 158687816 A T OR6K3 Silent p.P30P 0.56 TCGA-W3-AA1V-06 1 158735787 158735787 G A OR6N1 Missense_Mutation p.P229L 0.56 deleterious(0.01) benign(0.388) TCGA-W3-AA1V-06 1 158747132 158747132 G A OR6N2 Silent p.L98L 0.29 TCGA-W3-AA1V-06 1 158812209 158812209 G A MNDA Splice_Site p.X89_splice 0.23 TCGA-W3-AA1V-06 1 158815434 158815434 G A MNDA Missense_Mutation p.D210N 0.45 tolerated(0.24) benign(0.078) TCGA-W3-AA1V-06 1 158815487 158815487 C T MNDA Silent p.S227S 0.46 TCGA-W3-AA1V-06 1 158817577 158817577 T G MNDA Missense_Mutation p.D349E 0.28 tolerated(0.84) benign(0.039) TCGA-W3-AA1V-06 1 158908882 158908882 C T PYHIN1 Missense_Mutation p.P142S 0.23 tolerated(0.48) benign(0.002) TCGA-W3-AA1V-06 1 159021786 159021786 C T IFI16 Silent p.I605I 0.36 TCGA-W3-AA1V-06 1 159163743 159163743 G A CADM3 Missense_Mutation p.D236N 0.50 deleterious(0) probably_damaging(0.92) TCGA-W3-AA1V-06 1 159175570 159175570 C T DARC Missense_Mutation p.P116L 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 159175571 159175571 C T DARC Silent p.P116P 0.35 TCGA-W3-AA1V-06 1 159284108 159284108 G A OR10J3 Silent p.F114F 0.19 TCGA-W3-AA1V-06 1 159284355 159284356 AA G OR10J3 Frame_Shift_Del p.F32Pfs*2 0.35 TCGA-W3-AA1V-06 1 159284397 159284397 G A OR10J3 Missense_Mutation p.S18F 0.31 deleterious(0.03) benign(0.26) TCGA-W3-AA1V-06 1 159409713 159409713 C T OR10J1 Silent p.I55I 0.24 TCGA-W3-AA1V-06 1 159410288 159410288 C T OR10J1 Missense_Mutation p.A247V 0.30 deleterious(0.01) benign(0.279) TCGA-W3-AA1V-06 1 159558289 159558289 G A APCS Missense_Mutation p.E155K 0.12 deleterious(0.03) possibly_damaging(0.899) TCGA-W3-AA1V-06 1 159558299 159558299 C T APCS Missense_Mutation p.S158F 0.11 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1V-06 1 159683514 159683514 G A CRP Missense_Mutation p.S159F 0.26 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 1 159683519 159683519 C T CRP Silent p.Q157Q 0.28 TCGA-W3-AA1V-06 1 159683890 159683890 C T CRP Missense_Mutation p.D34N 0.30 tolerated(0.56) benign(0.046) TCGA-W3-AA1V-06 1 159684349 159684349 C T CRP 5'UTR 0.38 TCGA-W3-AA1V-06 1 159846463 159846463 T A CCDC19 Missense_Mutation p.K412M 0.24 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 1 159850480 159850480 C T CCDC19 Missense_Mutation p.R303Q 0.19 tolerated(0.32) benign(0.023) TCGA-W3-AA1V-06 1 159923219 159923219 G A SLAMF9 Missense_Mutation p.P91S 0.25 tolerated(0.22) benign(0.207) TCGA-W3-AA1V-06 1 160265612 160265612 G A COPA Missense_Mutation p.P806L 0.28 deleterious(0.01) possibly_damaging(0.652) TCGA-W3-AA1V-06 1 160275540 160275540 G A COPA Missense_Mutation p.S489F 0.26 deleterious(0) benign(0.062) TCGA-W3-AA1V-06 1 160313076 160313076 G A NCSTN 5'UTR 0.28 TCGA-W3-AA1V-06 1 160461092 160461092 C T SLAMF6 Missense_Mutation p.D157N 0.33 tolerated(1) benign(0.01) TCGA-W3-AA1V-06 1 160520752 160520752 G A CD84 Silent p.I295I 0.48 TCGA-W3-AA1V-06 1 160607288 160607288 G A SLAMF1 Silent p.L36L 0.32 TCGA-W3-AA1V-06 1 16069679 16069679 C T TMEM82 Missense_Mutation p.S109F 0.17 deleterious(0.01) benign(0.222) TCGA-W3-AA1V-06 1 160783674 160783674 C T LY9 Missense_Mutation p.P235S 0.51 tolerated(0.07) probably_damaging(0.998) TCGA-W3-AA1V-06 1 160914998 160914998 C T ITLN2 Missense_Mutation p.G304R 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-W3-AA1V-06 1 160920898 160920898 C T ITLN2 Missense_Mutation p.D126N 0.33 deleterious(0.01) benign(0.163) TCGA-W3-AA1V-06 1 16093905 16093905 G A FBLIM1 Silent p.E95E 0.21 TCGA-W3-AA1V-06 1 16093906 16093906 G A FBLIM1 Missense_Mutation p.D96N 0.21 tolerated(0.16) possibly_damaging(0.908) TCGA-W3-AA1V-06 1 161070437 161070437 G A PFDN2 3'UTR 0.32 TCGA-W3-AA1V-06 1 16111221 16111221 C T FBLIM1 3'UTR 0.65 TCGA-W3-AA1V-06 1 161276693 161276693 C T MPZ Missense_Mutation p.G85R 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 162326811 162326811 C T NOS1AP Missense_Mutation p.S275F 0.40 tolerated(0.1) benign(0.11) TCGA-W3-AA1V-06 1 162344318 162344318 G A C1orf111 Silent p.F102F 0.33 TCGA-W3-AA1V-06 1 162353025 162353025 G A C1orf226 Missense_Mutation p.R167K 0.37 tolerated(1) benign(0.034) TCGA-W3-AA1V-06 1 162473608 162473608 C T UHMK1 Missense_Mutation p.P273L 0.28 tolerated(0.09) probably_damaging(0.938) TCGA-W3-AA1V-06 1 163295855 163295855 C T NUF2 Missense_Mutation p.S5F 0.32 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 1 16383004 16383004 G A CLCNKB Splice_Site p.X672_splice 0.30 TCGA-W3-AA1V-06 1 16390058 16390058 C T FAM131C Silent p.S32S 0.65 TCGA-W3-AA1V-06 1 164776790 164776790 G A PBX1 Missense_Mutation p.R238Q 0.29 tolerated(0.08) probably_damaging(0.989) TCGA-W3-AA1V-06 1 165183012 165183012 G A LMX1A Missense_Mutation p.H179Y 0.39 deleterious(0.03) benign(0.071) TCGA-W3-AA1V-06 1 165376112 165376112 C G RXRG Missense_Mutation p.R394P 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 166896318 166896318 C T ILDR2 Missense_Mutation p.R327K 0.33 tolerated(0.09) probably_damaging(0.989) TCGA-W3-AA1V-06 1 167023476 167023476 G A GPA33 3'UTR 0.45 TCGA-W3-AA1V-06 1 167096871 167096871 G A DUSP27 Missense_Mutation p.E835K 0.46 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 1 167096987 167096987 G T DUSP27 Missense_Mutation p.K873N 0.17 tolerated(0.09) possibly_damaging(0.721) TCGA-W3-AA1V-06 1 16719780 16719780 C T SZRD1 Silent p.P53P 0.57 TCGA-W3-AA1V-06 1 16736511 16736511 C T SPATA21 Missense_Mutation p.E58K 0.30 deleterious(0.01) benign(0.421) TCGA-W3-AA1V-06 1 167403269 167403269 C T CD247 Silent p.G127G 0.38 TCGA-W3-AA1V-06 1 16757783 16757783 G A SPATA21 Intron 0.42 TCGA-W3-AA1V-06 1 167653182 167653182 C T RCSD1 Missense_Mutation p.P18S 0.28 deleterious(0) possibly_damaging(0.868) TCGA-W3-AA1V-06 1 167893773 167893773 G A MPC2 Missense_Mutation p.P38S 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 168066158 168066158 G A GPR161 Silent p.I249I 0.38 TCGA-W3-AA1V-06 1 16891316 16891316 G A NBPF1 Silent p.N1054N 0.03 TCGA-W3-AA1V-06 1 169500131 169500131 G A F5 Nonsense_Mutation p.Q1701* 0.35 TCGA-W3-AA1V-06 1 169576202 169576202 G A SELP Missense_Mutation p.P502S 0.30 tolerated(0.14) benign(0.038) TCGA-W3-AA1V-06 1 169586560 169586560 G A SELP Missense_Mutation p.R63C 0.39 deleterious(0.01) possibly_damaging(0.739) TCGA-W3-AA1V-06 1 171073055 171073055 C T FMO3 Nonsense_Mutation p.Q88* 0.23 TCGA-W3-AA1V-06 1 171079971 171079971 G A FMO3 Silent p.V220V 0.37 TCGA-W3-AA1V-06 1 171756877 171756877 C T METTL13 Silent p.V372V 0.16 TCGA-W3-AA1V-06 1 172001583 172001583 G A DNM3 Missense_Mutation p.D211N 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 172007555 172007555 A T DNM3 Missense_Mutation p.N316Y 0.35 deleterious(0.01) possibly_damaging(0.882) TCGA-W3-AA1V-06 1 17256819 17256819 C T CROCC Silent p.I220I 0.26 TCGA-W3-AA1V-06 1 172633502 172633502 G A FASLG Silent p.K141K 0.54 TCGA-W3-AA1V-06 1 172634810 172634810 G A FASLG Missense_Mutation p.G167E 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 17275415 17275415 C T CROCC Silent p.L944L 0.33 TCGA-W3-AA1V-06 1 173020018 173020018 C T TNFSF18 Missense_Mutation p.E29K 0.32 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 1 17323632 17323632 C T ATP13A2 Missense_Mutation p.G360R 0.28 deleterious(0) possibly_damaging(0.892) TCGA-W3-AA1V-06 1 173794417 173794417 C T DARS2 Missense_Mutation p.P17L 0.31 tolerated_low_confidence(0.21) benign(0.309) TCGA-W3-AA1V-06 1 175048509 175048509 G A TNN Silent p.L150L 0.45 TCGA-W3-AA1V-06 1 175048510 175048510 G A TNN Missense_Mutation p.E151K 0.45 deleterious(0.03) benign(0.15) TCGA-W3-AA1V-06 1 175052910 175052910 G A TNN Nonsense_Mutation p.W358* 0.38 TCGA-W3-AA1V-06 1 175097291 175097291 C T TNN Missense_Mutation p.L1057F 0.38 tolerated(1) benign(0.028) TCGA-W3-AA1V-06 1 175106082 175106082 G A TNN Missense_Mutation p.E1185K 0.24 deleterious(0.01) possibly_damaging(0.761) TCGA-W3-AA1V-06 1 17557135 17557135 G A PADI1 Silent p.R374R 0.22 TCGA-W3-AA1V-06 1 176015326 176015326 G A RFWD2 Missense_Mutation p.S471L 0.47 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 1 17609486 17609486 C T PADI3 Missense_Mutation p.P636L 0.49 tolerated(0.07) benign(0.021) TCGA-W3-AA1V-06 1 176563712 176563712 G A PAPPA2 Silent p.G324G 0.29 TCGA-W3-AA1V-06 1 176563969 176563969 G A PAPPA2 Missense_Mutation p.G410E 0.43 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 176563988 176563988 G A PAPPA2 Silent p.G416G 0.35 TCGA-W3-AA1V-06 1 176564231 176564231 A C PAPPA2 Silent p.P497P 0.34 TCGA-W3-AA1V-06 1 176564273 176564273 C T PAPPA2 Silent p.S511S 0.48 TCGA-W3-AA1V-06 1 176564348 176564348 G A PAPPA2 Silent p.E536E 0.30 TCGA-W3-AA1V-06 1 176709231 176709231 C T PAPPA2 Silent p.V1350V 0.29 TCGA-W3-AA1V-06 1 176734823 176734823 G A PAPPA2 Silent p.G1391G 0.28 TCGA-W3-AA1V-06 1 176762788 176762788 G A PAPPA2 Missense_Mutation p.E1705K 0.32 tolerated(0.59) benign(0.014) TCGA-W3-AA1V-06 1 17685894 17685894 C T PADI4 Silent p.F583F 0.24 TCGA-W3-AA1V-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.41 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 1 176998800 176998800 C T ASTN1 Missense_Mutation p.D364N 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 177001609 177001609 C T ASTN1 Missense_Mutation p.G283E 0.43 tolerated_low_confidence(0.2) benign(0.067) TCGA-W3-AA1V-06 1 177226420 177226420 C T BRINP2 Missense_Mutation p.S190F 0.56 deleterious(0) probably_damaging(0.958) TCGA-W3-AA1V-06 1 177927270 177927270 C T SEC16B Silent p.K454K 0.32 TCGA-W3-AA1V-06 1 179077498 179077498 G A ABL2 Silent p.S968S 0.33 TCGA-W3-AA1V-06 1 179077499 179077499 G A ABL2 Missense_Mutation p.S968F 0.32 deleterious_low_confidence(0.01) benign(0.372) TCGA-W3-AA1V-06 1 179084040 179084040 G A ABL2 Missense_Mutation p.P512S 0.33 tolerated(0.31) probably_damaging(0.938) TCGA-W3-AA1V-06 1 179533919 179533919 G A NPHS2 Missense_Mutation p.S95F 0.35 deleterious(0.01) possibly_damaging(0.613) TCGA-W3-AA1V-06 1 179562850 179562850 G A TDRD5 Missense_Mutation p.R163Q 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 1 179587770 179587770 G A TDRD5 Missense_Mutation p.G290R 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 179621209 179621209 G A TDRD5 Silent p.T679T 0.26 TCGA-W3-AA1V-06 1 17966709 17966709 C T ARHGEF10L Silent p.P728P 0.48 TCGA-W3-AA1V-06 1 180166624 180166624 C T QSOX1 3'UTR 0.36 TCGA-W3-AA1V-06 1 180775219 180775219 C T XPR1 Nonsense_Mutation p.R157* 0.29 TCGA-W3-AA1V-06 1 180775227 180775227 C T XPR1 Silent p.I159I 0.44 TCGA-W3-AA1V-06 1 180853280 180853280 C T XPR1 3'UTR 0.38 TCGA-W3-AA1V-06 1 180905040 180905040 G A KIAA1614 Silent p.A665A 0.29 TCGA-W3-AA1V-06 1 181680091 181680091 G A CACNA1E Missense_Mutation p.E353K 0.34 deleterious(0) benign(0.292) TCGA-W3-AA1V-06 1 181690933 181690933 G A CACNA1E Missense_Mutation p.G666R 0.30 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 1 181721314 181721314 C T CACNA1E Missense_Mutation p.S1256F 0.20 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1V-06 1 181721334 181721334 C T CACNA1E Silent p.L1263L 0.48 TCGA-W3-AA1V-06 1 181731773 181731773 A T CACNA1E Missense_Mutation p.I1557F 0.50 deleterious(0) possibly_damaging(0.537) TCGA-W3-AA1V-06 1 181732558 181732558 G A CACNA1E Missense_Mutation p.G1569D 0.24 tolerated(0.65) probably_damaging(0.982) TCGA-W3-AA1V-06 1 181752816 181752816 G A CACNA1E Missense_Mutation p.R1789K 0.38 deleterious(0.04) benign(0.067) TCGA-W3-AA1V-06 1 182354577 182354577 G A GLUL Missense_Mutation p.P240S 0.31 deleterious(0) possibly_damaging(0.749) TCGA-W3-AA1V-06 1 182569444 182569444 C T RGS16 Missense_Mutation p.E198K 0.25 tolerated_low_confidence(0.22) probably_damaging(0.981) TCGA-W3-AA1V-06 1 182615927 182615927 G A RGS8 Silent p.F180F 0.33 TCGA-W3-AA1V-06 1 182636050 182636050 C T RGS8 Missense_Mutation p.D47N 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-W3-AA1V-06 1 182898843 182898843 C T SHCBP1L Missense_Mutation p.G374E 0.42 deleterious(0) probably_damaging(0.963) TCGA-W3-AA1V-06 1 182908532 182908532 G A SHCBP1L Intron 0.37 TCGA-W3-AA1V-06 1 183209505 183209505 G A LAMC2 Missense_Mutation p.D1103N 0.21 tolerated(0.86) benign(0.142) TCGA-W3-AA1V-06 1 184701976 184701976 G A EDEM3 Missense_Mutation p.P203S 0.18 tolerated(0.36) benign(0.401) TCGA-W3-AA1V-06 1 184764793 184764793 G A FAM129A Missense_Mutation p.P702L 0.28 tolerated(0.1) benign(0.117) TCGA-W3-AA1V-06 1 184853881 184853881 G A FAM129A Missense_Mutation p.P163S 0.37 deleterious(0.01) possibly_damaging(0.652) TCGA-W3-AA1V-06 1 185892669 185892669 A G HMCN1 Missense_Mutation p.N390S 0.35 possibly_damaging(0.899) TCGA-W3-AA1V-06 1 185970523 185970523 C T HMCN1 Missense_Mutation p.P1388L 0.30 probably_damaging(0.999) TCGA-W3-AA1V-06 1 186277252 186277252 G A PRG4 Missense_Mutation p.E801K 0.24 unknown(0) TCGA-W3-AA1V-06 1 186321212 186321212 C T TPR Missense_Mutation p.E789K 0.38 benign(0.292) TCGA-W3-AA1V-06 1 18691981 18691981 G A IGSF21 Missense_Mutation p.V269I 0.41 tolerated(0.44) possibly_damaging(0.527) TCGA-W3-AA1V-06 1 18809064 18809064 C T KLHDC7A Missense_Mutation p.S530F 0.22 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 190250829 190250829 G A BRINP3 Silent p.F96F 0.21 TCGA-W3-AA1V-06 1 19186115 19186115 G A TAS1R2 Missense_Mutation p.L14F 0.46 deleterious_low_confidence(0.01) benign(0.338) TCGA-W3-AA1V-06 1 193053881 193053881 C T TROVE2 3'UTR 0.33 TCGA-W3-AA1V-06 1 196398829 196398829 G A KCNT2 Missense_Mutation p.L233F 0.42 tolerated(1) benign(0.166) TCGA-W3-AA1V-06 1 196436889 196436889 A T KCNT2 Missense_Mutation p.F163I 0.24 deleterious(0) probably_damaging(0.942) TCGA-W3-AA1V-06 1 196451500 196451500 G A KCNT2 Silent p.I95I 0.12 TCGA-W3-AA1V-06 1 196695952 196695952 C T CFH Silent p.S706S 0.38 TCGA-W3-AA1V-06 1 196716339 196716339 G A CFH Missense_Mutation p.E1198K 0.40 deleterious(0.05) probably_damaging(0.947) TCGA-W3-AA1V-06 1 196800945 196800945 G A CFHR1 Missense_Mutation p.R270Q 0.29 tolerated(0.08) benign(0.15) TCGA-W3-AA1V-06 1 196871600 196871600 G A CFHR4 Silent p.K36K 0.17 TCGA-W3-AA1V-06 1 196887394 196887394 G A CFHR4 Missense_Mutation p.G531E 0.17 tolerated(0.27) possibly_damaging(0.788) TCGA-W3-AA1V-06 1 196967417 196967417 C T CFHR5 Missense_Mutation p.P377L 0.30 deleterious(0) probably_damaging(0.957) TCGA-W3-AA1V-06 1 196973865 196973865 C T CFHR5 Missense_Mutation p.P469S 0.33 tolerated(0.11) possibly_damaging(0.725) TCGA-W3-AA1V-06 1 197021883 197021883 C T F13B Missense_Mutation p.G479E 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 197024920 197024920 C T F13B Missense_Mutation p.E427K 0.33 tolerated(0.1) possibly_damaging(0.685) TCGA-W3-AA1V-06 1 197029508 197029508 G A F13B Missense_Mutation p.P265S 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 1 197030092 197030092 C T F13B Missense_Mutation p.G189R 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 197036374 197036374 A G F13B 5'UTR 0.46 TCGA-W3-AA1V-06 1 197070221 197070221 A T ASPM Missense_Mutation p.N2720K 0.42 tolerated(0.28) benign(0.06) TCGA-W3-AA1V-06 1 197070331 197070331 C T ASPM Missense_Mutation p.D2684N 0.28 tolerated(0.35) benign(0.02) TCGA-W3-AA1V-06 1 197072870 197072870 G A ASPM Silent p.G1837G 0.35 TCGA-W3-AA1V-06 1 197072987 197072987 G A ASPM Silent p.F1798F 0.37 TCGA-W3-AA1V-06 1 197128907 197128907 G A ZBTB41 Missense_Mutation p.S771L 0.42 tolerated(0.14) benign(0.01) TCGA-W3-AA1V-06 1 197160898 197160898 G A ZBTB41 Missense_Mutation p.H418Y 0.28 tolerated(0.13) benign(0.153) TCGA-W3-AA1V-06 1 197403860 197403860 G A CRB1 Missense_Mutation p.G956E 0.35 tolerated(0.13) benign(0.025) TCGA-W3-AA1V-06 1 200376879 200376879 G A ZNF281 Missense_Mutation p.P652L 0.34 deleterious(0.01) possibly_damaging(0.555) TCGA-W3-AA1V-06 1 200376880 200376880 G A ZNF281 Missense_Mutation p.P652S 0.33 tolerated(0.38) benign(0.056) TCGA-W3-AA1V-06 1 200969589 200969589 C T KIF21B Silent p.S538S 0.40 TCGA-W3-AA1V-06 1 201046128 201046128 C T CACNA1S Missense_Mutation p.G583R 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 201047208 201047208 G A CACNA1S Missense_Mutation p.S473F 0.36 deleterious(0) possibly_damaging(0.477) TCGA-W3-AA1V-06 1 201061190 201061190 G A CACNA1S Missense_Mutation p.P151S 0.31 tolerated_low_confidence(0.21) possibly_damaging(0.474) TCGA-W3-AA1V-06 1 201331114 201331114 C T TNNT2 Missense_Mutation p.E206K 0.32 deleterious(0) possibly_damaging(0.592) TCGA-W3-AA1V-06 1 201334362 201334362 C T TNNT2 Missense_Mutation p.R113K 0.30 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 1 201355549 201355549 G A LAD1 Missense_Mutation p.P314S 0.36 tolerated(0.23) benign(0.053) TCGA-W3-AA1V-06 1 201843402 201843402 C T IPO9 Missense_Mutation p.P912L 0.42 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 1 201980352 201980352 C T ELF3 Missense_Mutation p.P30S 0.35 tolerated(0.07) benign(0.219) TCGA-W3-AA1V-06 1 202096874 202096874 C T GPR37L1 Silent p.S212S 0.40 TCGA-W3-AA1V-06 1 202288094 202288094 C T LGR6 Missense_Mutation p.P888L 0.38 tolerated(0.1) benign(0.066) TCGA-W3-AA1V-06 1 202403820 202403820 C T PPP1R12B Missense_Mutation p.S393F 0.31 deleterious(0.01) possibly_damaging(0.534) TCGA-W3-AA1V-06 1 202711809 202711809 C A KDM5B Missense_Mutation p.Q816H 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-W3-AA1V-06 1 202880324 202880324 G A KLHL12 Missense_Mutation p.S192F 0.32 deleterious(0) possibly_damaging(0.832) TCGA-W3-AA1V-06 1 202992036 202992036 C T TMEM183A Silent p.F333F 0.34 TCGA-W3-AA1V-06 1 203024587 203024587 G A PPFIA4 Silent p.T113T 0.35 TCGA-W3-AA1V-06 1 203045618 203045618 C T PPFIA4 3'UTR 0.25 TCGA-W3-AA1V-06 1 203191417 203191417 G A CHIT1 Silent p.F214F 0.38 TCGA-W3-AA1V-06 1 204587432 204587432 G A LRRN2 Silent p.S563S 0.26 TCGA-W3-AA1V-06 1 204587897 204587897 G A LRRN2 Silent p.V408V 0.29 TCGA-W3-AA1V-06 1 204588931 204588931 G A LRRN2 Missense_Mutation p.P64S 0.37 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 1 204913534 204913534 C T NFASC Missense_Mutation p.P31S 0.45 tolerated(0.28) benign(0.095) TCGA-W3-AA1V-06 1 204956533 204956533 C T NFASC Intron 0.33 TCGA-W3-AA1V-06 1 205119833 205119833 G A DSTYK Silent p.I814I 0.29 TCGA-W3-AA1V-06 1 20517440 20517440 C T UBXN10 Missense_Mutation p.A129V 0.31 deleterious(0.03) benign(0.067) TCGA-W3-AA1V-06 1 205272731 205272731 C T NUAK2 Silent p.T578T 0.44 TCGA-W3-AA1V-06 1 205273550 205273550 C T NUAK2 Nonsense_Mutation p.W305* 0.45 TCGA-W3-AA1V-06 1 205819210 205819210 G A PM20D1 5'UTR 0.32 TCGA-W3-AA1V-06 1 205898463 205898463 T A SLC26A9 Missense_Mutation p.N247Y 0.47 deleterious(0.03) possibly_damaging(0.601) TCGA-W3-AA1V-06 1 206319124 206319124 C T CTSE Silent p.S83S 0.41 TCGA-W3-AA1V-06 1 206821150 206821150 G A DYRK3 Missense_Mutation p.D203N 0.48 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 1 206905485 206905485 C T MAPKAPK2 Intron 0.33 TCGA-W3-AA1V-06 1 207108030 207108030 G A PIGR Silent p.V480V 0.31 TCGA-W3-AA1V-06 1 207108860 207108860 C T PIGR Missense_Mutation p.R450K 0.39 tolerated(0.85) benign(0.033) TCGA-W3-AA1V-06 1 207110594 207110594 G A PIGR Silent p.I297I 0.48 TCGA-W3-AA1V-06 1 207131828 207131828 C T FCAMR 3'UTR 0.25 TCGA-W3-AA1V-06 1 207131829 207131829 C T FCAMR 3'UTR 0.25 TCGA-W3-AA1V-06 1 207300085 207300085 C T C4BPA Missense_Mutation p.S245L 0.38 tolerated(0.1) benign(0.002) TCGA-W3-AA1V-06 1 207646375 207646375 G A CR2 Missense_Mutation p.G610E 0.35 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 1 209791282 209791282 G A LAMB3 Silent p.S1007S 0.33 TCGA-W3-AA1V-06 1 209879202 209879202 G A HSD11B1 Silent p.G45G 0.31 TCGA-W3-AA1V-06 1 209953921 209953921 G A TRAF3IP3 Silent p.K473K 0.22 TCGA-W3-AA1V-06 1 20996958 20996958 G A KIF17 Missense_Mutation p.P917S 0.23 tolerated(0.38) benign(0.011) TCGA-W3-AA1V-06 1 209969706 209969706 C T IRF6 Silent p.S122S 0.25 TCGA-W3-AA1V-06 1 210015781 210015781 A T DIEXF Missense_Mutation p.M553L 0.30 tolerated(0.11) benign(0) TCGA-W3-AA1V-06 1 210016874 210016874 C T DIEXF Silent p.S620S 0.44 TCGA-W3-AA1V-06 1 21014091 21014091 G A KIF17 Silent p.F576F 0.55 TCGA-W3-AA1V-06 1 210412878 210412878 C T SERTAD4 Silent p.S72S 0.37 TCGA-W3-AA1V-06 1 210412924 210412924 C T SERTAD4 Missense_Mutation p.H88Y 0.23 deleterious(0.04) benign(0.261) TCGA-W3-AA1V-06 1 21151604 21151604 G A EIF4G3 Missense_Mutation p.L1403F 0.32 deleterious(0.05) possibly_damaging(0.84) TCGA-W3-AA1V-06 1 212792865 212792865 C T ATF3 Nonsense_Mutation p.Q172* 0.35 TCGA-W3-AA1V-06 1 21329245 21329245 G A EIF4G3 5'UTR 0.22 TCGA-W3-AA1V-06 1 213414781 213414781 T C RPS6KC1 Silent p.F654F 0.40 TCGA-W3-AA1V-06 1 215775536 215775536 C T KCTD3 Silent p.P377P 0.30 TCGA-W3-AA1V-06 1 215820969 215820969 G A USH2A Missense_Mutation p.L4896F 0.33 benign(0.151) TCGA-W3-AA1V-06 1 215972355 215972355 C T USH2A Silent p.G3284G 0.31 TCGA-W3-AA1V-06 1 216348710 216348710 C T USH2A Missense_Mutation p.R1504K 0.39 possibly_damaging(0.742) TCGA-W3-AA1V-06 1 216405477 216405477 A G USH2A Silent p.G937G 0.20 TCGA-W3-AA1V-06 1 216500953 216500953 G A USH2A Silent p.Y276Y 0.40 TCGA-W3-AA1V-06 1 217783738 217783738 G A GPATCH2 Silent p.F341F 0.33 TCGA-W3-AA1V-06 1 217975077 217975077 C T SPATA17 Missense_Mutation p.S297L 0.37 deleterious(0) possibly_damaging(0.548) TCGA-W3-AA1V-06 1 21880550 21880550 G A ALPL 5'UTR 0.38 TCGA-W3-AA1V-06 1 21939680 21939680 G A RAP1GAP Missense_Mutation p.L237F 0.22 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 220198503 220198503 G A EPRS Missense_Mutation p.P241S 0.22 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 1 22084195 22084195 A T USP48 Missense_Mutation p.F72L 0.40 deleterious(0.04) benign(0.053) TCGA-W3-AA1V-06 1 220870075 220870075 G A C1orf115 3'UTR 0.36 TCGA-W3-AA1V-06 1 222889029 222889029 A T BROX 5'UTR 0.47 TCGA-W3-AA1V-06 1 222889030 222889030 C T BROX 5'UTR 0.47 TCGA-W3-AA1V-06 1 223165415 223165415 G A DISP1 Nonsense_Mutation p.W284* 0.32 TCGA-W3-AA1V-06 1 22332159 22332159 G A CELA3A Missense_Mutation p.D78N 0.43 tolerated(0.19) benign(0.006) TCGA-W3-AA1V-06 1 223905506 223905506 C T CAPN2 Missense_Mutation p.R94C 0.42 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1V-06 1 223972002 223972002 T A TP53BP2 Missense_Mutation p.M1060L 0.40 tolerated(0.85) benign(0.224) TCGA-W3-AA1V-06 1 225155136 225155136 C T DNAH14 Missense_Mutation p.P168S 0.47 tolerated(0.12) benign(0.418) TCGA-W3-AA1V-06 1 226076520 226076520 G A LEFTY1 Nonsense_Mutation p.R83* 0.29 TCGA-W3-AA1V-06 1 226175962 226175962 C G SDE2 Missense_Mutation p.E257Q 0.32 tolerated(0.06) benign(0.321) TCGA-W3-AA1V-06 1 227618505 227618505 G A CTD-2090I13.1 RNA 0.46 TCGA-W3-AA1V-06 1 228285661 228285661 G A ARF1 Missense_Mutation p.G165R 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 22838560 22838560 C T ZBTB40 Silent p.P798P 0.14 TCGA-W3-AA1V-06 1 228402507 228402507 C T OBSCN Silent p.P512P 0.31 TCGA-W3-AA1V-06 1 228461229 228461229 C T OBSCN Silent p.S2081S 0.24 TCGA-W3-AA1V-06 1 228462467 228462467 C T OBSCN Silent p.L2335L 0.53 TCGA-W3-AA1V-06 1 228480457 228480457 G A OBSCN Missense_Mutation p.E4042K 0.33 probably_damaging(0.946) TCGA-W3-AA1V-06 1 228524948 228524948 A G OBSCN Missense_Mutation p.K6512R 0.50 benign(0.103) TCGA-W3-AA1V-06 1 228582515 228582515 G A TRIM11 Missense_Mutation p.P433L 0.47 tolerated(0.08) benign(0.003) TCGA-W3-AA1V-06 1 22924686 22924686 C T EPHA8 Missense_Mutation p.S720F 0.19 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 229745918 229745918 G A TAF5L Missense_Mutation p.A61V 0.27 tolerated(0.18) benign(0.009) TCGA-W3-AA1V-06 1 22987514 22987514 C T C1QB Missense_Mutation p.P133S 0.21 tolerated(0.39) benign(0.005) TCGA-W3-AA1V-06 1 230492698 230492698 G A PGBD5 Missense_Mutation p.P165L 0.31 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1V-06 1 230903365 230903365 G A CAPN9 Silent p.E205E 0.40 TCGA-W3-AA1V-06 1 231359943 231359943 G A C1orf131 3'UTR 0.32 TCGA-W3-AA1V-06 1 231411002 231411002 C T GNPAT Silent p.D593D 0.17 TCGA-W3-AA1V-06 1 231954248 231954248 C T DISC1 Nonsense_Mutation p.Q656* 0.25 TCGA-W3-AA1V-06 1 23219466 23219466 C T EPHB2 Silent p.F506F 0.48 TCGA-W3-AA1V-06 1 233152741 233152741 G A PCNXL2 Nonsense_Mutation p.Q1589* 0.39 TCGA-W3-AA1V-06 1 233275579 233275579 G A PCNXL2 Silent p.F1180F 0.27 TCGA-W3-AA1V-06 1 233353661 233353661 G A PCNXL2 Missense_Mutation p.P892L 0.31 deleterious(0.01) possibly_damaging(0.546) TCGA-W3-AA1V-06 1 233514777 233514777 G A MLK4 Silent p.G675G 0.46 TCGA-W3-AA1V-06 1 233807093 233807093 C T KCNK1 Silent p.F276F 0.31 TCGA-W3-AA1V-06 1 23519616 23519616 G C HTR1D Missense_Mutation p.A366G 0.51 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 1 235826268 235826268 G A LYST Missense_Mutation p.S3793F 0.31 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 1 236195766 236195766 C T NID1 Missense_Mutation p.G491E 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 236195767 236195767 C T NID1 Missense_Mutation p.G491R 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 23645113 23645113 G T HNRNPR Missense_Mutation p.L297I 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-W3-AA1V-06 1 23688414 23688414 A G ZNF436 3'UTR 0.33 TCGA-W3-AA1V-06 1 237013802 237013802 C T MTR Silent p.I558I 0.35 TCGA-W3-AA1V-06 1 237037098 237037098 C T MTR Missense_Mutation p.P811S 0.40 tolerated(0.07) probably_damaging(0.965) TCGA-W3-AA1V-06 1 237167461 237167461 C T MT1HL1 3'UTR 0.31 TCGA-W3-AA1V-06 1 237494235 237494235 C T RYR2 Missense_Mutation p.R76W 0.15 probably_damaging(0.971) TCGA-W3-AA1V-06 1 237620006 237620006 C T RYR2 Missense_Mutation p.S528F 0.29 possibly_damaging(0.462) TCGA-W3-AA1V-06 1 237659954 237659954 G A RYR2 Missense_Mutation p.G702E 0.39 probably_damaging(1) TCGA-W3-AA1V-06 1 237713877 237713877 C T RYR2 Missense_Mutation p.P1034S 0.64 probably_damaging(0.99) TCGA-W3-AA1V-06 1 237729903 237729903 G A RYR2 Missense_Mutation p.R1084K 0.36 benign(0) TCGA-W3-AA1V-06 1 237948198 237948198 C T RYR2 Missense_Mutation p.H4396Y 0.33 possibly_damaging(0.677) TCGA-W3-AA1V-06 1 240070827 240070827 G A CHRM3 Missense_Mutation p.D26N 0.28 tolerated_low_confidence(0.47) benign(0.002) TCGA-W3-AA1V-06 1 240370138 240370138 A T FMN2 Missense_Mutation p.I676F 0.28 unknown(0) TCGA-W3-AA1V-06 1 240370359 240370359 G A FMN2 Silent p.T749T 0.39 TCGA-W3-AA1V-06 1 240370557 240370557 C T FMN2 Silent p.S815S 0.23 TCGA-W3-AA1V-06 1 240964790 240964790 G A RGS7 Missense_Mutation p.R460C 0.21 deleterious(0) benign(0.335) TCGA-W3-AA1V-06 1 240969598 240969598 T A RGS7 Nonsense_Mutation p.K371* 0.25 TCGA-W3-AA1V-06 1 241672028 241672028 C G FH Missense_Mutation p.E205Q 0.40 tolerated(0.33) benign(0.004) TCGA-W3-AA1V-06 1 241680603 241680603 G A FH Missense_Mutation p.S49F 0.27 deleterious_low_confidence(0) benign(0.261) TCGA-W3-AA1V-06 1 241757741 241757741 G A OPN3 Missense_Mutation p.R400C 0.35 tolerated(0.07) benign(0.037) TCGA-W3-AA1V-06 1 2419048 2419048 G A PLCH2 Missense_Mutation p.D349N 0.18 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1V-06 1 24201934 24201934 G A CNR2 Silent p.I58I 0.48 TCGA-W3-AA1V-06 1 242271071 242271071 G A PLD5 Missense_Mutation p.L381F 0.35 deleterious(0) probably_damaging(0.977) TCGA-W3-AA1V-06 1 242511409 242511409 G A PLD5 Nonsense_Mutation p.R109* 0.24 TCGA-W3-AA1V-06 1 24388451 24388451 C T MYOM3 Missense_Mutation p.D1307N 0.22 deleterious(0.03) probably_damaging(0.976) TCGA-W3-AA1V-06 1 24409033 24409033 C T MYOM3 Intron 0.29 TCGA-W3-AA1V-06 1 24410969 24410969 G A MYOM3 Silent p.I653I 0.19 TCGA-W3-AA1V-06 1 24447458 24447458 G A IL22RA1 Missense_Mutation p.S521F 0.23 tolerated(0.11) possibly_damaging(0.736) TCGA-W3-AA1V-06 1 244572860 244572860 G A ADSS 3'UTR 0.44 TCGA-W3-AA1V-06 1 247150518 247150518 C T ZNF695 Silent p.E433E 0.37 TCGA-W3-AA1V-06 1 247151117 247151117 G A ZNF695 Missense_Mutation p.H234Y 0.42 tolerated(0.05) benign(0.1) TCGA-W3-AA1V-06 1 247587769 247587769 C T NLRP3 Missense_Mutation p.P342S 0.30 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 1 247654918 247654918 G A OR2W5 RNA 0.36 TCGA-W3-AA1V-06 1 247694827 247694827 C T OR2C3 3'UTR 0.45 TCGA-W3-AA1V-06 1 247694932 247694932 C T OR2C3 Silent p.R294R 0.41 TCGA-W3-AA1V-06 1 247712443 247712443 C T GCSAML 5'UTR 0.24 TCGA-W3-AA1V-06 1 247768910 247768910 C T OR2G3 Missense_Mutation p.S8F 0.28 tolerated(0.26) benign(0.014) TCGA-W3-AA1V-06 1 247769033 247769033 C T OR2G3 Missense_Mutation p.S49L 0.33 deleterious(0.01) possibly_damaging(0.792) TCGA-W3-AA1V-06 1 247769727 247769727 G A OR2G3 Missense_Mutation p.M280I 0.26 tolerated(0.8) benign(0.01) TCGA-W3-AA1V-06 1 247902852 247902852 G A OR14K1 Missense_Mutation p.M312I 0.35 tolerated(0.75) benign(0.002) TCGA-W3-AA1V-06 1 247978518 247978518 C T OR14A16 Missense_Mutation p.V172I 0.31 tolerated(0.91) benign(0.173) TCGA-W3-AA1V-06 1 247978538 247978544 GATAAGG AATA OR14A16 In_Frame_Del p.S163_S165delinsLF 0.43 TCGA-W3-AA1V-06 1 247978656 247978656 G A OR14A16 Missense_Mutation p.H126Y 0.25 tolerated(0.13) benign(0.168) TCGA-W3-AA1V-06 1 248004278 248004278 C T OR11L1 Silent p.R307R 0.31 TCGA-W3-AA1V-06 1 248004371 248004371 G A OR11L1 Silent p.V276V 0.25 TCGA-W3-AA1V-06 1 248004394 248004394 C T OR11L1 Missense_Mutation p.E269K 0.26 tolerated(0.37) probably_damaging(0.961) TCGA-W3-AA1V-06 1 248004539 248004539 G A OR11L1 Silent p.F220F 0.45 TCGA-W3-AA1V-06 1 248112506 248112506 C T OR2L8 Missense_Mutation p.S116F 0.29 tolerated(0.21) benign(0.017) TCGA-W3-AA1V-06 1 248201715 248201715 T A OR2L2 Missense_Mutation p.F49Y 0.28 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 1 248201726 248201726 C T OR2L2 Missense_Mutation p.H53Y 0.32 deleterious(0.03) benign(0.013) TCGA-W3-AA1V-06 1 248224601 248224601 C T OR2L3 Silent p.L206L 0.31 TCGA-W3-AA1V-06 1 248224646 248224646 C T OR2L3 Silent p.L221L 0.31 TCGA-W3-AA1V-06 1 248308981 248308981 T A OR2M5 Missense_Mutation p.F178I 0.33 deleterious(0) probably_damaging(0.929) TCGA-W3-AA1V-06 1 248343371 248343371 C T OR2M2 Silent p.F28F 0.29 TCGA-W3-AA1V-06 1 248343973 248343973 G A OR2M2 Missense_Mutation p.G229E 0.27 tolerated(0.63) benign(0.139) TCGA-W3-AA1V-06 1 248366730 248366730 G A OR2M3 Missense_Mutation p.D121N 0.36 deleterious(0.02) benign(0.32) TCGA-W3-AA1V-06 1 248366815 248366815 G A OR2M3 Nonsense_Mutation p.W149* 0.31 TCGA-W3-AA1V-06 1 248366819 248366819 C T OR2M3 Silent p.I150I 0.30 TCGA-W3-AA1V-06 1 248367140 248367140 C T OR2M3 Silent p.F257F 0.32 TCGA-W3-AA1V-06 1 248436475 248436475 G A OR2T33 Silent p.S214S 0.24 TCGA-W3-AA1V-06 1 248487356 248487356 C T OR2M7 Missense_Mutation p.R172Q 0.48 tolerated(0.13) benign(0.055) TCGA-W3-AA1V-06 1 248487769 248487769 G A OR2M7 Silent p.I34I 0.44 TCGA-W3-AA1V-06 1 248512933 248512933 T A OR14C36 Missense_Mutation p.I286N 0.26 deleterious(0) probably_damaging(0.968) TCGA-W3-AA1V-06 1 248551026 248551026 G A OR2T6 Missense_Mutation p.M39I 0.33 tolerated(0.21) benign(0) TCGA-W3-AA1V-06 1 248551051 248551051 C T OR2T6 Silent p.L48L 0.31 TCGA-W3-AA1V-06 1 248569781 248569781 C T OR2T1 Silent p.F162F 0.29 TCGA-W3-AA1V-06 1 248756747 248756747 C T OR2T10 Missense_Mutation p.G108E 0.26 tolerated(0.06) possibly_damaging(0.71) TCGA-W3-AA1V-06 1 248801880 248801880 C T OR2T35 Missense_Mutation p.R227K 0.42 tolerated(0.07) benign(0.082) TCGA-W3-AA1V-06 1 24989198 24989198 C T SRRM1 Missense_Mutation p.H511Y 0.22 unknown(0) TCGA-W3-AA1V-06 1 25229105 25229105 G A RUNX3 Silent p.F266F 0.10 TCGA-W3-AA1V-06 1 26110197 26110197 G A MAN1C1 Missense_Mutation p.E604K 0.51 deleterious(0.01) possibly_damaging(0.595) TCGA-W3-AA1V-06 1 26517235 26517235 G A CATSPER4 Silent p.R39R 0.82 TCGA-W3-AA1V-06 1 26658088 26658088 C T AIM1L Silent p.T528T 0.33 TCGA-W3-AA1V-06 1 26664902 26664902 G A AIM1L Silent p.P263P 0.28 TCGA-W3-AA1V-06 1 27217552 27217552 G A GPATCH3 Silent p.A509A 0.25 TCGA-W3-AA1V-06 1 27217553 27217553 G A GPATCH3 Missense_Mutation p.A509V 0.23 tolerated(0.07) benign(0.075) TCGA-W3-AA1V-06 1 27734680 27734680 G A WASF2 3'UTR 0.31 TCGA-W3-AA1V-06 1 27873979 27873979 G A AHDC1 Missense_Mutation p.P1550S 0.62 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-W3-AA1V-06 1 27876985 27876985 C T AHDC1 Missense_Mutation p.G548S 0.30 deleterious(0) probably_damaging(0.935) TCGA-W3-AA1V-06 1 27940959 27940959 C T FGR Missense_Mutation p.E411K 0.44 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1V-06 1 28531825 28531825 G A DNAJC8 Silent p.L169L 0.26 TCGA-W3-AA1V-06 1 28792294 28792294 G A PHACTR4 Missense_Mutation p.E134K 0.49 deleterious(0.05) benign(0.046) TCGA-W3-AA1V-06 1 28792333 28792333 C G PHACTR4 Missense_Mutation p.P147A 0.24 tolerated(0.05) possibly_damaging(0.615) TCGA-W3-AA1V-06 1 28792334 28792334 C T PHACTR4 Missense_Mutation p.P147L 0.26 tolerated(0.06) benign(0.073) TCGA-W3-AA1V-06 1 29189428 29189428 A T OPRD1 Missense_Mutation p.E251V 0.28 deleterious(0) probably_damaging(0.956) TCGA-W3-AA1V-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.22 TCGA-W3-AA1V-06 1 29533367 29533367 G A MECR Missense_Mutation p.P153S 0.17 tolerated(0.17) benign(0.33) TCGA-W3-AA1V-06 1 32259376 32259376 C T SPOCD1 Missense_Mutation p.E836K 0.19 deleterious(0.03) benign(0.124) TCGA-W3-AA1V-06 1 32259771 32259771 C T SPOCD1 Silent p.G779G 0.30 TCGA-W3-AA1V-06 1 32280347 32280347 G A SPOCD1 Silent p.S196S 0.17 TCGA-W3-AA1V-06 1 32573649 32573649 G A KPNA6 5'UTR 0.49 TCGA-W3-AA1V-06 1 32673305 32673305 G A IQCC Silent p.Q421Q 0.24 TCGA-W3-AA1V-06 1 32742032 32742032 G A LCK Silent p.R242R 0.43 TCGA-W3-AA1V-06 1 33252658 33252658 G A YARS Missense_Mutation p.L235F 0.11 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 33252659 33252659 G A YARS Silent p.L234L 0.11 TCGA-W3-AA1V-06 1 33291748 33291748 C T S100PBP Silent p.L16L 0.55 TCGA-W3-AA1V-06 1 3350424 3350424 G A PRDM16 3'UTR 0.32 TCGA-W3-AA1V-06 1 33960885 33960885 C T ZSCAN20 Missense_Mutation p.H981Y 0.18 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 1 33999421 33999421 C T CSMD2 Nonsense_Mutation p.W3178* 0.28 TCGA-W3-AA1V-06 1 34011639 34011639 C T CSMD2 Missense_Mutation p.G2889E 0.11 tolerated(0.82) benign(0) TCGA-W3-AA1V-06 1 34038273 34038273 G A CSMD2 Missense_Mutation p.P2534L 0.32 tolerated(0.13) probably_damaging(0.997) TCGA-W3-AA1V-06 1 34166119 34166119 G A CSMD2 Missense_Mutation p.S1204F 0.41 tolerated(0.07) benign(0.439) TCGA-W3-AA1V-06 1 34166132 34166132 C T CSMD2 Missense_Mutation p.E1200K 0.42 tolerated(0.36) benign(0.098) TCGA-W3-AA1V-06 1 34192262 34192262 G A CSMD2 Missense_Mutation p.S758L 0.45 deleterious(0) benign(0.212) TCGA-W3-AA1V-06 1 34204783 34204783 C T CSMD2 Missense_Mutation p.E736K 0.30 deleterious(0.02) possibly_damaging(0.689) TCGA-W3-AA1V-06 1 34204844 34204844 G A CSMD2 Silent p.F715F 0.36 TCGA-W3-AA1V-06 1 34286097 34286097 C T CSMD2 Missense_Mutation p.R351K 0.23 tolerated(0.13) benign(0.002) TCGA-W3-AA1V-06 1 34330057 34330057 G A HMGB4 Missense_Mutation p.D89N 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1V-06 1 34666515 34666515 G A C1orf94 Silent p.K384K 0.33 TCGA-W3-AA1V-06 1 35223729 35223729 C T GJB5 Silent p.D266D 0.41 TCGA-W3-AA1V-06 1 35369957 35369957 C T DLGAP3 Missense_Mutation p.G343E 0.29 deleterious(0.01) possibly_damaging(0.521) TCGA-W3-AA1V-06 1 3544066 3544066 G T TPRG1L Missense_Mutation p.R158L 0.20 deleterious(0) probably_damaging(0.937) TCGA-W3-AA1V-06 1 35476606 35476606 G A ZMYM6 Missense_Mutation p.S365F 0.60 deleterious(0) benign(0.219) TCGA-W3-AA1V-06 1 35972635 35972635 G A KIAA0319L Missense_Mutation p.L82F 0.16 tolerated(0.15) benign(0.023) TCGA-W3-AA1V-06 1 36214060 36214060 G A CLSPN Silent p.F806F 0.33 TCGA-W3-AA1V-06 1 3643744 3643744 G A TP73 Missense_Mutation p.M266I 0.24 tolerated(0.23) benign(0.065) TCGA-W3-AA1V-06 1 3648075 3648075 C T TP73 Silent p.S511S 0.17 TCGA-W3-AA1V-06 1 36557393 36557393 C T ADPRHL2 Silent p.S161S 0.28 TCGA-W3-AA1V-06 1 36645634 36645634 C T MAP7D1 Silent p.L827L 0.26 TCGA-W3-AA1V-06 1 3670736 3670736 C T CCDC27 Nonsense_Mutation p.R125* 0.27 TCGA-W3-AA1V-06 1 36785902 36785902 C T SH3D21 Silent p.C546C 0.46 TCGA-W3-AA1V-06 1 36859274 36859274 G A LSM10 3'UTR 0.17 TCGA-W3-AA1V-06 1 38149041 38149041 G C C1orf109 Missense_Mutation p.P175R 0.34 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 1 38300755 38300755 G A MTF1 Missense_Mutation p.S329L 0.44 tolerated(0.09) benign(0.002) TCGA-W3-AA1V-06 1 39749836 39749836 C T MACF1 Silent p.P343P 0.30 TCGA-W3-AA1V-06 1 39816507 39816507 C T MACF1 Silent p.V1610V 0.13 TCGA-W3-AA1V-06 1 39879663 39879663 C T KIAA0754 Silent p.T1106T 0.41 TCGA-W3-AA1V-06 1 40038232 40038232 A G PABPC4 Missense_Mutation p.F74L 0.49 tolerated(0.06) benign(0.291) TCGA-W3-AA1V-06 1 40310244 40310244 C T TRIT1 Missense_Mutation p.V359I 0.23 deleterious(0.04) possibly_damaging(0.742) TCGA-W3-AA1V-06 1 40767491 40767491 C T COL9A2 Silent p.G621G 0.21 TCGA-W3-AA1V-06 1 40773911 40773911 G A COL9A2 Missense_Mutation p.P285S 0.39 tolerated(0.18) benign(0) TCGA-W3-AA1V-06 1 40881040 40881040 C T SMAP2 Missense_Mutation p.S223F 0.51 tolerated(0.13) possibly_damaging(0.548) TCGA-W3-AA1V-06 1 40928183 40928183 T A ZFP69B Missense_Mutation p.F176Y 0.34 tolerated(0.85) benign(0.041) TCGA-W3-AA1V-06 1 41285139 41285139 G A KCNQ4 Missense_Mutation p.G277R 0.28 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 1 41984080 41984080 G A HIVEP3 Silent p.A1821A 0.32 TCGA-W3-AA1V-06 1 42049954 42049954 G A HIVEP3 Missense_Mutation p.S172F 0.26 benign(0.429) TCGA-W3-AA1V-06 1 42896290 42896290 G A ZMYND12 3'UTR 0.20 TCGA-W3-AA1V-06 1 43224566 43224566 G A LEPRE1 Silent p.F299F 0.30 TCGA-W3-AA1V-06 1 43224567 43224567 A T LEPRE1 Missense_Mutation p.F299Y 0.29 tolerated(0.11) possibly_damaging(0.821) TCGA-W3-AA1V-06 1 43748580 43748580 C T C1orf210 Missense_Mutation p.G73E 0.32 tolerated(0.11) benign(0.086) TCGA-W3-AA1V-06 1 43782963 43782963 G A TIE1 Missense_Mutation p.E835K 0.31 deleterious(0) possibly_damaging(0.725) TCGA-W3-AA1V-06 1 43787144 43787144 C T TIE1 Nonsense_Mutation p.R1076* 0.23 TCGA-W3-AA1V-06 1 43903468 43903468 C T SZT2 Missense_Mutation p.R2078C 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1V-06 1 44069402 44069402 C T PTPRF Missense_Mutation p.A860V 0.17 tolerated(0.26) benign(0.03) TCGA-W3-AA1V-06 1 44069403 44069403 C T PTPRF Silent p.A860A 0.16 TCGA-W3-AA1V-06 1 44422007 44422007 C T IPO13 Silent p.L279L 0.21 TCGA-W3-AA1V-06 1 44433401 44433401 C T IPO13 3'UTR 0.60 TCGA-W3-AA1V-06 1 44437123 44437123 C T DPH2 Silent p.P183P 0.38 TCGA-W3-AA1V-06 1 44463533 44463533 G A SLC6A9 Silent p.L640L 0.58 TCGA-W3-AA1V-06 1 45125911 45125911 G A TMEM53 Missense_Mutation p.L40F 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 45219478 45219478 C A KIF2C Missense_Mutation p.N212K 0.24 deleterious(0.04) benign(0.028) TCGA-W3-AA1V-06 1 45797443 45797443 G A MUTYH Missense_Mutation p.P356L 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 45923493 45923493 G A TESK2 5'UTR 0.36 TCGA-W3-AA1V-06 1 46070653 46070653 C T NASP Silent p.F88F 0.48 TCGA-W3-AA1V-06 1 46743597 46743597 G A RAD54L Missense_Mutation p.E660K 0.28 tolerated(0.06) benign(0.143) TCGA-W3-AA1V-06 1 47264727 47264727 G A CYP4B1 5'UTR 0.57 TCGA-W3-AA1V-06 1 47279903 47279903 G A CYP4B1 Silent p.K266K 0.21 TCGA-W3-AA1V-06 1 47282727 47282727 C T CYP4B1 Silent p.L361L 0.24 TCGA-W3-AA1V-06 1 47333762 47333762 C T CYP4Z2P RNA 0.48 TCGA-W3-AA1V-06 1 47364525 47364525 C T CYP4Z2P RNA 0.23 TCGA-W3-AA1V-06 1 47398409 47398409 G A CYP4A11 Intron 0.20 TCGA-W3-AA1V-06 1 47399643 47399643 G A CYP4A11 Silent p.F399F 0.22 TCGA-W3-AA1V-06 1 47403000 47403000 G A CYP4A11 Missense_Mutation p.S119F 0.45 tolerated(0.71) benign(0.009) TCGA-W3-AA1V-06 1 47501529 47501529 G A CYP4X1 Missense_Mutation p.E182K 0.42 tolerated(0.13) benign(0.048) TCGA-W3-AA1V-06 1 47505181 47505181 G A CYP4X1 Silent p.L350L 0.28 TCGA-W3-AA1V-06 1 47512150 47512150 G A CYP4X1 Missense_Mutation p.G362D 0.25 tolerated(0.78) benign(0.007) TCGA-W3-AA1V-06 1 47515884 47515884 G A CYP4X1 3'UTR 0.39 TCGA-W3-AA1V-06 1 47650740 47650740 C T PDZK1IP1 Missense_Mutation p.G69E 0.20 tolerated(0.36) possibly_damaging(0.805) TCGA-W3-AA1V-06 1 47655587 47655587 G A PDZK1IP1 Silent p.L6L 0.44 TCGA-W3-AA1V-06 1 49056542 49056542 G A AGBL4 Missense_Mutation p.P356L 0.55 deleterious(0) probably_damaging(0.919) TCGA-W3-AA1V-06 1 50610690 50610690 C T ELAVL4 Missense_Mutation p.P41L 0.30 deleterious_low_confidence(0.03) benign(0.149) TCGA-W3-AA1V-06 1 50659567 50659567 G A ELAVL4 Missense_Mutation p.R179Q 0.24 deleterious(0) probably_damaging(0.968) TCGA-W3-AA1V-06 1 50666785 50666785 G A ELAVL4 Missense_Mutation p.G363R 0.61 deleterious(0.02) possibly_damaging(0.895) TCGA-W3-AA1V-06 1 51868132 51868132 A G EPS15 Silent p.F619F 0.19 TCGA-W3-AA1V-06 1 51875257 51875257 C A EPS15 Nonsense_Mutation p.E409* 0.49 TCGA-W3-AA1V-06 1 52275033 52275033 G A NRD1 Silent p.F716F 0.27 TCGA-W3-AA1V-06 1 52850371 52850371 G A ORC1 Missense_Mutation p.P536S 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 53558413 53558413 C T SLC1A7 Missense_Mutation p.E282K 0.20 tolerated(0.08) probably_damaging(0.981) TCGA-W3-AA1V-06 1 53580607 53580607 G A SLC1A7 Missense_Mutation p.S85F 0.71 deleterious(0.04) probably_damaging(0.995) TCGA-W3-AA1V-06 1 53927229 53927229 C T DMRTB1 Missense_Mutation p.P221S 0.32 tolerated(0.06) possibly_damaging(0.539) TCGA-W3-AA1V-06 1 53932476 53932476 G A DMRTB1 3'UTR 0.25 TCGA-W3-AA1V-06 1 53980374 53980374 G A GLIS1 Missense_Mutation p.H428Y 0.57 tolerated(0.1) probably_damaging(0.968) TCGA-W3-AA1V-06 1 54060539 54060539 G C GLIS1 Missense_Mutation p.R13G 0.23 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-W3-AA1V-06 1 54360200 54360200 A G DIO1 Missense_Mutation p.N106S 0.50 tolerated(0.95) benign(0.011) TCGA-W3-AA1V-06 1 54534501 54534501 C T TCEANC2 Missense_Mutation p.L59F 0.34 deleterious(0) probably_damaging(0.938) TCGA-W3-AA1V-06 1 54605409 54605409 C T CDCP2 Silent p.G378G 0.46 TCGA-W3-AA1V-06 1 55119483 55119483 C T MROH7 Missense_Mutation p.A295V 0.19 deleterious_low_confidence(0.02) benign(0.082) TCGA-W3-AA1V-06 1 55337173 55337173 G A DHCR24 Silent p.F242F 0.32 TCGA-W3-AA1V-06 1 55599811 55599811 G A USP24 Silent p.L1105L 0.21 TCGA-W3-AA1V-06 1 57171824 57171824 G A PRKAA2 Silent p.V451V 0.18 TCGA-W3-AA1V-06 1 57257790 57257790 C T C1orf168 Silent p.R232R 0.23 TCGA-W3-AA1V-06 1 57373639 57373639 G A C8A Silent p.R411R 0.22 TCGA-W3-AA1V-06 1 57378088 57378088 C T C8A Missense_Mutation p.H465Y 0.24 tolerated(0.57) benign(0.014) TCGA-W3-AA1V-06 1 57378160 57378160 C T C8A Nonsense_Mutation p.Q489* 0.19 TCGA-W3-AA1V-06 1 57378168 57378168 G A C8A Silent p.L491L 0.29 TCGA-W3-AA1V-06 1 57383303 57383303 G A C8A Missense_Mutation p.E557K 0.12 tolerated(0.15) benign(0.232) TCGA-W3-AA1V-06 1 57411496 57411496 C T C8B Missense_Mutation p.G368E 0.50 tolerated(0.39) benign(0.001) TCGA-W3-AA1V-06 1 57476843 57476843 G A DAB1 Missense_Mutation p.P516L 0.15 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 1 60297854 60297854 T G HOOK1 Missense_Mutation p.V81G 0.44 deleterious(0) possibly_damaging(0.55) TCGA-W3-AA1V-06 1 60297855 60297855 C T HOOK1 Silent p.V81V 0.44 TCGA-W3-AA1V-06 1 60456306 60456306 G A C1orf87 3'UTR 0.28 TCGA-W3-AA1V-06 1 61553841 61553841 C T NFIA Silent p.I61I 0.28 TCGA-W3-AA1V-06 1 6172314 6172314 C T CHD5 Missense_Mutation p.E1676K 0.25 tolerated(0.24) benign(0.056) TCGA-W3-AA1V-06 1 6196641 6196641 G A CHD5 Missense_Mutation p.P878S 0.53 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 1 62253518 62253518 G A INADL Silent p.R314R 0.68 TCGA-W3-AA1V-06 1 6252996 6252996 G A RPL22 Missense_Mutation p.S79F 0.23 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 1 62550304 62550304 G A INADL Missense_Mutation p.G1454E 0.44 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 1 62728940 62728940 G A KANK4 Missense_Mutation p.S788F 0.33 deleterious(0) benign(0.065) TCGA-W3-AA1V-06 1 62941486 62941486 G A DOCK7 Silent p.G1920G 0.49 TCGA-W3-AA1V-06 1 62962124 62962124 G A DOCK7 Silent p.S1572S 0.30 TCGA-W3-AA1V-06 1 63044623 63044623 T G DOCK7 Missense_Mutation p.H629P 0.34 deleterious(0) benign(0.207) TCGA-W3-AA1V-06 1 63113939 63113939 G A DOCK7 Silent p.S190S 0.45 TCGA-W3-AA1V-06 1 64644197 64644197 C T ROR1 Missense_Mutation p.P825S 0.56 tolerated(0.24) probably_damaging(0.996) TCGA-W3-AA1V-06 1 65311255 65311255 G A JAK1 Missense_Mutation p.L686F 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 65311261 65311261 C T JAK1 Missense_Mutation p.D684N 0.23 tolerated(0.18) benign(0.007) TCGA-W3-AA1V-06 1 65691746 65691746 G A AK4 Silent p.K186K 0.39 TCGA-W3-AA1V-06 1 65867453 65867453 G A DNAJC6 Missense_Mutation p.G706E 0.62 tolerated(0.08) possibly_damaging(0.904) TCGA-W3-AA1V-06 1 65895596 65895596 C T LEPROT Silent p.P48P 0.53 TCGA-W3-AA1V-06 1 66074565 66074565 G A LEPR Missense_Mutation p.G578E 0.52 tolerated(0.08) benign(0.367) TCGA-W3-AA1V-06 1 66088659 66088659 C T LEPR Nonsense_Mutation p.Q890* 0.28 TCGA-W3-AA1V-06 1 66384433 66384433 C T PDE4B Missense_Mutation p.P66S 0.36 deleterious_low_confidence(0.05) benign(0.05) TCGA-W3-AA1V-06 1 6679876 6679876 G A PHF13 Missense_Mutation p.R52K 0.22 deleterious(0.02) possibly_damaging(0.449) TCGA-W3-AA1V-06 1 67292566 67292566 G A WDR78 Missense_Mutation p.S759L 0.39 deleterious(0.03) probably_damaging(0.969) TCGA-W3-AA1V-06 1 67306249 67306249 G A WDR78 Missense_Mutation p.S466L 0.57 deleterious(0.02) benign(0.147) TCGA-W3-AA1V-06 1 68905270 68905270 G A RPE65 Silent p.D233D 0.41 TCGA-W3-AA1V-06 1 68906589 68906589 C T RPE65 Missense_Mutation p.G197E 0.31 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 68944892 68944892 G A DEPDC1 Missense_Mutation p.L683F 0.29 tolerated(0.33) benign(0.071) TCGA-W3-AA1V-06 1 68948101 68948101 C T DEPDC1 Missense_Mutation p.E464K 0.09 tolerated(0.4) benign(0.002) TCGA-W3-AA1V-06 1 70225908 70225908 C T LRRC7 Silent p.I7I 0.60 TCGA-W3-AA1V-06 1 70555470 70555470 G A LRRC7 Missense_Mutation p.G1467R 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA1V-06 1 71478107 71478107 C T PTGER3 Missense_Mutation p.E320K 0.28 tolerated(0.36) benign(0.41) TCGA-W3-AA1V-06 1 71546726 71546726 G A ZRANB2 5'UTR 0.52 TCGA-W3-AA1V-06 1 74808561 74808561 C T FPGT-TNNI3K Missense_Mutation p.H354Y 0.47 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 1 74832949 74832949 C T FPGT-TNNI3K Missense_Mutation p.A510V 0.24 deleterious(0.04) possibly_damaging(0.493) TCGA-W3-AA1V-06 1 75037271 75037271 C T C1orf173 Missense_Mutation p.A1375T 0.29 tolerated(0.07) possibly_damaging(0.864) TCGA-W3-AA1V-06 1 75037892 75037892 C T C1orf173 Missense_Mutation p.E1168K 0.43 deleterious(0.05) probably_damaging(0.91) TCGA-W3-AA1V-06 1 75038899 75038899 G A C1orf173 Missense_Mutation p.P832L 0.26 tolerated(0.05) possibly_damaging(0.533) TCGA-W3-AA1V-06 1 75038901 75038901 G A C1orf173 Silent p.I831I 0.28 TCGA-W3-AA1V-06 1 75055332 75055332 G A C1orf173 Missense_Mutation p.P720L 0.23 tolerated(0.67) benign(0.009) TCGA-W3-AA1V-06 1 75078395 75078395 C T C1orf173 Missense_Mutation p.E367K 0.63 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 75214461 75214461 C T TYW3 Silent p.F127F 0.46 TCGA-W3-AA1V-06 1 75707698 75707698 G A SLC44A5 Missense_Mutation p.P174S 0.21 deleterious(0.01) possibly_damaging(0.45) TCGA-W3-AA1V-06 1 76779646 76779646 C T ST6GALNAC3 Nonsense_Mutation p.R59* 0.48 TCGA-W3-AA1V-06 1 7723662 7723662 C T CAMTA1 Missense_Mutation p.P352L 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 7723663 7723663 C T CAMTA1 Silent p.P352P 0.30 TCGA-W3-AA1V-06 1 7724703 7724703 A T CAMTA1 Missense_Mutation p.E699V 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-W3-AA1V-06 1 77806212 77806212 C T AK5 Missense_Mutation p.P284S 0.53 tolerated(0.19) probably_damaging(1) TCGA-W3-AA1V-06 1 78395140 78395140 G A NEXN Missense_Mutation p.R335K 0.36 tolerated(0.34) benign(0.003) TCGA-W3-AA1V-06 1 78478930 78478930 G C DNAJB4 Missense_Mutation p.G136A 0.26 deleterious(0.05) benign(0.003) TCGA-W3-AA1V-06 1 7863183 7863183 C T PER3 Missense_Mutation p.R316C 0.24 deleterious(0.02) probably_damaging(0.965) TCGA-W3-AA1V-06 1 78958725 78958725 C T PTGFR Silent p.I99I 0.49 TCGA-W3-AA1V-06 1 79093796 79093796 C T IFI44L Missense_Mutation p.L66F 0.19 tolerated(0.55) probably_damaging(0.987) TCGA-W3-AA1V-06 1 79387356 79387356 G A ELTD1 Missense_Mutation p.S400L 0.24 deleterious(0) possibly_damaging(0.864) TCGA-W3-AA1V-06 1 8073599 8073599 G A ERRFI1 Missense_Mutation p.P354S 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 8073600 8073600 G A ERRFI1 Silent p.A353A 0.27 TCGA-W3-AA1V-06 1 82372860 82372860 C T LPHN2 Nonsense_Mutation p.Q78* 0.49 TCGA-W3-AA1V-06 1 82417754 82417754 G A LPHN2 Silent p.V570V 0.40 TCGA-W3-AA1V-06 1 82432226 82432226 C T LPHN2 Missense_Mutation p.S744L 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 1 82450995 82450995 C T LPHN2 Missense_Mutation p.S1138F 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 1 82455353 82455353 C T LPHN2 Intron 0.26 TCGA-W3-AA1V-06 1 8424267 8424267 G A RERE Missense_Mutation p.T530I 0.43 probably_damaging(0.997) TCGA-W3-AA1V-06 1 85331551 85331551 A T LPAR3 Missense_Mutation p.F85I 0.26 tolerated(0.08) benign(0.36) TCGA-W3-AA1V-06 1 85787237 85787237 C T DDAH1 Silent p.L252L 0.50 TCGA-W3-AA1V-06 1 861342 861342 G A SAMD11 Silent p.Q7Q 0.38 TCGA-W3-AA1V-06 1 86590545 86590545 C T COL24A1 Missense_Mutation p.G492R 0.32 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 1 86847976 86847976 G A ODF2L Silent p.I191I 0.20 TCGA-W3-AA1V-06 1 87031512 87031512 C T CLCA4 Missense_Mutation p.H255Y 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 87033177 87033177 C T CLCA4 Missense_Mutation p.S342F 0.21 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 1 87570372 87570372 C T HS2ST1 Missense_Mutation p.S355L 0.23 tolerated(0.3) benign(0.006) TCGA-W3-AA1V-06 1 883936 883936 G A NOC2L Silent p.S497S 0.23 TCGA-W3-AA1V-06 1 8926353 8926353 G A ENO1 Silent p.L218L 0.49 TCGA-W3-AA1V-06 1 90398635 90398635 C T LRRC8D Missense_Mutation p.T3I 0.53 deleterious(0.01) probably_damaging(0.966) TCGA-W3-AA1V-06 1 90475680 90475680 G A ZNF326 Missense_Mutation p.G217R 0.60 deleterious(0.03) probably_damaging(0.997) TCGA-W3-AA1V-06 1 9101824 9101824 C T SLC2A5 Intron 0.31 TCGA-W3-AA1V-06 1 91382528 91382528 G A ZNF644 Nonsense_Mutation p.R1271* 0.51 TCGA-W3-AA1V-06 1 9164489 9164489 G A GPR157 Missense_Mutation p.P333S 0.49 tolerated_low_confidence(0.39) benign(0.007) TCGA-W3-AA1V-06 1 92495837 92495837 C T EPHX4 Silent p.S67S 0.56 TCGA-W3-AA1V-06 1 92979374 92979374 G A EVI5 Missense_Mutation p.P758S 0.26 tolerated_low_confidence(0.4) benign(0.002) TCGA-W3-AA1V-06 1 93167754 93167754 G A EVI5 Missense_Mutation p.R239C 0.22 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 1 93672810 93672810 G A CCDC18 Missense_Mutation p.R409K 0.21 tolerated(0.84) benign(0.031) TCGA-W3-AA1V-06 1 94522337 94522337 G A ABCA4 Silent p.F734F 0.37 TCGA-W3-AA1V-06 1 94643648 94643648 C T ARHGAP29 Silent p.R852R 0.28 TCGA-W3-AA1V-06 1 94668201 94668201 G A ARHGAP29 Missense_Mutation p.R348C 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1V-06 1 95448732 95448732 G A ALG14 Missense_Mutation p.S184F 0.43 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 1 95492755 95492755 G T ALG14 Missense_Mutation p.S117Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 97544569 97544569 T A DPYD Missense_Mutation p.K1014M 0.53 deleterious(0) benign(0.439) TCGA-W3-AA1V-06 1 9787130 9787130 G A PIK3CD 3'UTR 0.16 TCGA-W3-AA1V-06 1 98039511 98039511 C T DPYD Missense_Mutation p.E382K 0.29 tolerated(0.08) benign(0.116) TCGA-W3-AA1V-06 1 980553 980553 C T AGRN Missense_Mutation p.A756V 0.32 tolerated(0.23) benign(0.003) TCGA-W3-AA1V-06 1 98164935 98164935 C T DPYD Missense_Mutation p.E218K 0.49 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 1 98187133 98187133 C T DPYD Missense_Mutation p.G139E 0.36 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 1 982765 982765 C T AGRN Silent p.F1149F 0.68 TCGA-W3-AA1V-06 1 985847 985847 C T AGRN Missense_Mutation p.P1673S 0.39 tolerated(0.32) benign(0.22) TCGA-W3-AA1V-06 1 985848 985848 C T AGRN Missense_Mutation p.P1673L 0.38 deleterious(0.02) possibly_damaging(0.896) TCGA-W3-AA1V-06 20 10030076 10030076 C T ANKEF1 Missense_Mutation p.P287S 0.21 deleterious(0.01) possibly_damaging(0.821) TCGA-W3-AA1V-06 20 10036279 10036279 C T ANKEF1 Nonsense_Mutation p.R768* 0.27 TCGA-W3-AA1V-06 20 10286784 10286784 C T SNAP25 Missense_Mutation p.S187F 0.28 tolerated(0.53) benign(0.446) TCGA-W3-AA1V-06 20 10394077 10394077 A G MKKS Missense_Mutation p.L29S 0.22 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 20 13029693 13029693 G A SPTLC3 Missense_Mutation p.G73E 0.31 deleterious(0) possibly_damaging(0.717) TCGA-W3-AA1V-06 20 13029740 13029740 G A SPTLC3 Missense_Mutation p.E89K 0.29 tolerated(0.15) probably_damaging(0.998) TCGA-W3-AA1V-06 20 13140729 13140729 C T SPTLC3 Missense_Mutation p.R499W 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 139528 139528 C T DEFB127 Missense_Mutation p.L55F 0.25 tolerated(0.05) benign(0.227) TCGA-W3-AA1V-06 20 1546877 1546877 G A SIRPB1 Missense_Mutation p.A374V 0.31 tolerated(0.15) possibly_damaging(0.793) TCGA-W3-AA1V-06 20 1551666 1551666 C T SIRPB1 Missense_Mutation p.G290E 0.21 deleterious(0.02) possibly_damaging(0.64) TCGA-W3-AA1V-06 20 1552395 1552395 C T SIRPB1 Missense_Mutation p.G241E 0.23 deleterious(0.04) possibly_damaging(0.781) TCGA-W3-AA1V-06 20 1629820 1629820 G A SIRPG Missense_Mutation p.S103F 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 16354956 16354956 G A KIF16B Missense_Mutation p.S1099F 0.19 tolerated_low_confidence(0.05) benign(0.012) TCGA-W3-AA1V-06 20 16360090 16360090 C T KIF16B Missense_Mutation p.E853K 0.15 deleterious_low_confidence(0) benign(0.388) TCGA-W3-AA1V-06 20 1638384 1638384 C T SIRPG 5'UTR 0.35 TCGA-W3-AA1V-06 20 16407779 16407779 G A KIF16B Nonsense_Mutation p.Q528* 0.16 TCGA-W3-AA1V-06 20 16488719 16488719 A G KIF16B Missense_Mutation p.Y195H 0.17 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 20 170228 170228 C T DEFB128 Missense_Mutation p.E13K 0.25 deleterious(0.05) unknown(0) TCGA-W3-AA1V-06 20 17716485 17716485 C T BANF2 3'UTR 0.42 TCGA-W3-AA1V-06 20 17716508 17716508 C T BANF2 3'Flank 0.26 TCGA-W3-AA1V-06 20 18286948 18286948 C T ZNF133 Missense_Mutation p.S43L 0.20 tolerated(0.25) benign(0.001) TCGA-W3-AA1V-06 20 18297057 18297057 C T ZNF133 Missense_Mutation p.P520L 0.21 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 20 18526628 18526628 A C SEC23B Missense_Mutation p.E565A 0.12 deleterious(0) benign(0.142) TCGA-W3-AA1V-06 20 18794789 18794789 C T SCP2D1 Silent p.I110I 0.51 TCGA-W3-AA1V-06 20 18794790 18794790 C T SCP2D1 Missense_Mutation p.P111S 0.51 tolerated(1) benign(0.217) TCGA-W3-AA1V-06 20 19261715 19261715 G A SLC24A3 Silent p.K85K 0.20 TCGA-W3-AA1V-06 20 19701914 19701914 C T SLC24A3 3'UTR 0.40 TCGA-W3-AA1V-06 20 20033130 20033130 C T CRNKL1 Missense_Mutation p.G114S 0.16 deleterious_low_confidence(0) benign(0) TCGA-W3-AA1V-06 20 20246241 20246241 G A C20orf26 Intron 0.23 TCGA-W3-AA1V-06 20 20493876 20493876 C A RALGAPA2 Missense_Mutation p.M1379I 0.23 tolerated(0.6) benign(0.05) TCGA-W3-AA1V-06 20 21195195 21195195 C A RP4-777D9.2 Intron 0.13 TCGA-W3-AA1V-06 20 21195196 21195196 C T RP4-777D9.2 Intron 0.13 TCGA-W3-AA1V-06 20 21311144 21311144 A T XRN2 Silent p.I151I 0.31 TCGA-W3-AA1V-06 20 22562368 22562368 G A FOXA2 3'UTR 0.33 TCGA-W3-AA1V-06 20 23065788 23065788 C T CD93 Missense_Mutation p.E348K 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 23334951 23334951 C T NXT1 Silent p.V91V 0.29 TCGA-W3-AA1V-06 20 23361853 23361853 G A NAPB Silent p.A221A 0.16 TCGA-W3-AA1V-06 20 23361854 23361854 G A NAPB Missense_Mutation p.A221V 0.15 tolerated(0.07) benign(0.145) TCGA-W3-AA1V-06 20 23472210 23472210 C T CST8 5'UTR 0.27 TCGA-W3-AA1V-06 20 2375098 2375098 G A TGM6 Missense_Mutation p.G3E 0.26 tolerated(0.12) benign(0.282) TCGA-W3-AA1V-06 20 238422 238422 G A DEFB132 Translation_Start_Site p.M1? 0.29 deleterious(0) benign(0.107) TCGA-W3-AA1V-06 20 23966770 23966770 T G GGTLC1 Missense_Mutation p.T83P 0.25 tolerated(1) benign(0) TCGA-W3-AA1V-06 20 24646185 24646185 G A SYNDIG1 3'UTR 0.62 TCGA-W3-AA1V-06 20 2465271 2465271 G A ZNF343 Silent p.S112S 0.17 TCGA-W3-AA1V-06 20 2559842 2559842 C T TMC2 Silent p.I232I 0.64 TCGA-W3-AA1V-06 20 2573013 2573013 G A TMC2 Missense_Mutation p.E298K 0.22 tolerated(0.46) benign(0.011) TCGA-W3-AA1V-06 20 2593972 2593972 G A TMC2 Intron 0.17 TCGA-W3-AA1V-06 20 2636088 2636088 G A NOP56 Silent p.E229E 0.33 TCGA-W3-AA1V-06 20 2637822 2637822 C T NOP56 Silent p.L459L 0.18 TCGA-W3-AA1V-06 20 2944931 2944931 C T PTPRA Missense_Mutation p.S3F 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-W3-AA1V-06 20 29623126 29623126 T G FRG1B Intron 0.08 TCGA-W3-AA1V-06 20 29632654 29632654 A T FRG1B Nonsense_Mutation p.K157* 0.05 TCGA-W3-AA1V-06 20 29847290 29847290 G A DEFB115 Missense_Mutation p.G41E 0.23 deleterious(0.03) possibly_damaging(0.479) TCGA-W3-AA1V-06 20 29891223 29891223 C T DEFB116 Missense_Mutation p.R34Q 0.24 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 20 29976790 29976790 G A DEFB119 3'UTR 0.58 TCGA-W3-AA1V-06 20 30064553 30064553 G A REM1 Missense_Mutation p.G102E 0.19 deleterious(0.03) benign(0.048) TCGA-W3-AA1V-06 20 30064554 30064554 G A REM1 Silent p.G102G 0.19 TCGA-W3-AA1V-06 20 30458411 30458411 C T DUSP15 5'UTR 0.64 TCGA-W3-AA1V-06 20 3053040 3053040 G A OXT Silent p.A118A 0.16 TCGA-W3-AA1V-06 20 30584771 30584771 G A XKR7 Missense_Mutation p.M417I 0.13 tolerated(0.52) benign(0.006) TCGA-W3-AA1V-06 20 30661152 30661152 G A HCK Missense_Mutation p.G72R 0.39 tolerated(0.21) benign(0.003) TCGA-W3-AA1V-06 20 30733201 30733201 C T TM9SF4 Silent p.S286S 0.40 TCGA-W3-AA1V-06 20 30749106 30749106 C T TM9SF4 Silent p.L573L 0.23 TCGA-W3-AA1V-06 20 30804488 30804488 C T POFUT1 Missense_Mutation p.S169F 0.21 tolerated(0.2) possibly_damaging(0.783) TCGA-W3-AA1V-06 20 30897945 30897945 C T KIF3B Missense_Mutation p.S122L 0.38 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1V-06 20 3090773 3090773 G A UBOX5 Silent p.D535D 0.22 TCGA-W3-AA1V-06 20 3090774 3090774 T C UBOX5 Missense_Mutation p.D535G 0.21 tolerated(0.08) probably_damaging(0.957) TCGA-W3-AA1V-06 20 30918027 30918027 C T KIF3B Silent p.V684V 0.41 TCGA-W3-AA1V-06 20 30919102 30919102 C T KIF3B Missense_Mutation p.R742W 0.48 deleterious(0) possibly_damaging(0.689) TCGA-W3-AA1V-06 20 3129181 3129181 G A FASTKD5 Missense_Mutation p.P179L 0.17 deleterious(0.03) benign(0.075) TCGA-W3-AA1V-06 20 31375103 31375103 C T DNMT3B Missense_Mutation p.T167I 0.25 tolerated_low_confidence(0.05) benign(0.004) TCGA-W3-AA1V-06 20 31627188 31627188 G A BPIFB6 Silent p.T312T 0.27 TCGA-W3-AA1V-06 20 31671580 31671580 G A BPIFB4 Missense_Mutation p.G193R 0.09 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 20 31757079 31757079 G A BPIFA2 Missense_Mutation p.G43E 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-W3-AA1V-06 20 31979977 31979977 G A CDK5RAP1 Missense_Mutation p.S172F 0.21 deleterious(0.03) possibly_damaging(0.847) TCGA-W3-AA1V-06 20 32248113 32248113 G A NECAB3 Missense_Mutation p.S159L 0.38 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 20 3251181 3251181 C A C20orf194 Missense_Mutation p.S893I 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-W3-AA1V-06 20 32693176 32693176 T C EIF2S2 Missense_Mutation p.K64R 0.31 tolerated(0.1) probably_damaging(0.985) TCGA-W3-AA1V-06 20 33147217 33147217 C T MAP1LC3A Missense_Mutation p.P59S 0.35 tolerated(0.09) possibly_damaging(0.76) TCGA-W3-AA1V-06 20 33515140 33515140 G A ACSS2 3'UTR 0.25 TCGA-W3-AA1V-06 20 33575618 33575618 C T MYH7B Silent p.F481F 0.11 TCGA-W3-AA1V-06 20 33581194 33581194 G A MYH7B Missense_Mutation p.A831T 0.36 benign(0.411) TCGA-W3-AA1V-06 20 34021908 34021908 G A GDF5 Silent p.F435F 0.23 TCGA-W3-AA1V-06 20 34220808 34220808 G C CPNE1 Missense_Mutation p.S18C 0.29 deleterious(0.03) probably_damaging(0.976) TCGA-W3-AA1V-06 20 34843703 34843703 C T AAR2 3'UTR 0.25 TCGA-W3-AA1V-06 20 34843741 34843741 C T AAR2 3'UTR 0.67 TCGA-W3-AA1V-06 20 35060291 35060291 C T DLGAP4 Silent p.L57L 0.25 TCGA-W3-AA1V-06 20 35173319 35173319 C T MYL9 Missense_Mutation p.T11I 0.22 tolerated(0.1) possibly_damaging(0.86) TCGA-W3-AA1V-06 20 35262936 35262936 C T SLA2 Missense_Mutation p.E50K 0.18 tolerated(0.11) benign(0.028) TCGA-W3-AA1V-06 20 35504592 35504592 C T TLDC2 Silent p.R5R 0.41 TCGA-W3-AA1V-06 20 35569511 35569511 G A SAMHD1 Silent p.S93S 0.30 TCGA-W3-AA1V-06 20 35724223 35724223 C T RBL1 Missense_Mutation p.E37K 0.28 deleterious(0.01) benign(0.024) TCGA-W3-AA1V-06 20 3655467 3655467 C T ADAM33 Silent p.R121R 0.19 TCGA-W3-AA1V-06 20 36760849 36760849 C T TGM2 Missense_Mutation p.E557K 0.21 deleterious(0.02) possibly_damaging(0.69) TCGA-W3-AA1V-06 20 36841979 36841979 G A KIAA1755 Missense_Mutation p.S1023F 0.28 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 20 36995459 36995459 C A LBP Missense_Mutation p.P323H 0.28 deleterious(0) probably_damaging(0.926) TCGA-W3-AA1V-06 20 37195821 37195821 C T RALGAPB Silent p.S1300S 0.31 TCGA-W3-AA1V-06 20 37464767 37464767 G A PPP1R16B Missense_Mutation p.E67K 0.19 deleterious(0.04) possibly_damaging(0.575) TCGA-W3-AA1V-06 20 37580749 37580749 G A FAM83D Silent p.E478E 0.55 TCGA-W3-AA1V-06 20 40733337 40733337 C T PTPRT Missense_Mutation p.D1138N 0.35 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 20 40738973 40738973 C T PTPRT Missense_Mutation p.S1085N 0.72 deleterious(0.01) benign(0.016) TCGA-W3-AA1V-06 20 40739115 40739115 C T PTPRT Missense_Mutation p.E1038K 0.51 deleterious(0.04) possibly_damaging(0.566) TCGA-W3-AA1V-06 20 41306677 41306677 G A PTPRT Missense_Mutation p.R328C 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-W3-AA1V-06 20 42195138 42195138 G A SGK2 Missense_Mutation p.M61I 0.29 tolerated(0.11) benign(0.008) TCGA-W3-AA1V-06 20 42199677 42199677 G A SGK2 Missense_Mutation p.E223K 0.62 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1V-06 20 42341680 42341680 G A MYBL2 Silent p.L586L 0.60 TCGA-W3-AA1V-06 20 425775 425775 C T TBC1D20 Splice_Site p.X86_splice 0.24 TCGA-W3-AA1V-06 20 42876030 42876030 C T GDAP1L1 Missense_Mutation p.A19V 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1V-06 20 42966050 42966050 G A R3HDML Missense_Mutation p.E85K 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-W3-AA1V-06 20 43030043 43030043 G A HNF4A Missense_Mutation p.D11N 0.54 deleterious_low_confidence(0.02) benign(0.274) TCGA-W3-AA1V-06 20 43249751 43249751 C T ADA Missense_Mutation p.D295N 0.33 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 20 43355730 43355730 C T WISP2 Missense_Mutation p.P179S 0.25 tolerated(0.26) benign(0.004) TCGA-W3-AA1V-06 20 43355773 43355773 C T WISP2 Missense_Mutation p.P193L 0.16 tolerated(0.33) benign(0.006) TCGA-W3-AA1V-06 20 43850713 43850713 G A SEMG2 Missense_Mutation p.G147E 0.28 tolerated(0.13) benign(0.259) TCGA-W3-AA1V-06 20 43851797 43851797 C T SEMG2 Silent p.I508I 0.20 TCGA-W3-AA1V-06 20 44313402 44313402 G A WFDC10B 3'UTR 0.19 TCGA-W3-AA1V-06 20 44333166 44333166 G A WFDC10B Missense_Mutation p.L37F 0.54 tolerated(0.71) benign(0.184) TCGA-W3-AA1V-06 20 44506076 44506076 C T ZSWIM3 Silent p.I293I 0.32 TCGA-W3-AA1V-06 20 44506292 44506292 C T ZSWIM3 Silent p.F365F 0.23 TCGA-W3-AA1V-06 20 44839092 44839092 G A CDH22 Silent p.I380I 0.50 TCGA-W3-AA1V-06 20 44839152 44839152 G A CDH22 Silent p.A360A 0.15 TCGA-W3-AA1V-06 20 45130160 45130160 C T ZNF334 Silent p.G606G 0.25 TCGA-W3-AA1V-06 20 45130235 45130235 G A ZNF334 Silent p.F581F 0.45 TCGA-W3-AA1V-06 20 45130345 45130345 C T ZNF334 Missense_Mutation p.E545K 0.17 tolerated(0.15) benign(0.257) TCGA-W3-AA1V-06 20 45131203 45131203 G A ZNF334 Missense_Mutation p.H259Y 0.30 tolerated(0.15) possibly_damaging(0.672) TCGA-W3-AA1V-06 20 45131243 45131243 G A ZNF334 Silent p.T245T 0.19 TCGA-W3-AA1V-06 20 45194879 45194879 G A SLC13A3 Silent p.L495L 0.21 TCGA-W3-AA1V-06 20 45644827 45644827 G A EYA2 Silent p.K102K 0.24 TCGA-W3-AA1V-06 20 46264393 46264393 C T NCOA3 Silent p.I480I 0.26 TCGA-W3-AA1V-06 20 46305247 46305247 C A SULF2 Missense_Mutation p.Q457H 0.36 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 20 47317381 47317381 C T PREX1 Missense_Mutation p.G276E 0.19 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 4764839 4764839 G A RASSF2 3'UTR 0.22 TCGA-W3-AA1V-06 20 47701915 47701915 T A CSE1L Missense_Mutation p.I572N 0.38 deleterious(0) possibly_damaging(0.905) TCGA-W3-AA1V-06 20 4770339 4770339 G A RASSF2 Missense_Mutation p.S181F 0.21 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1V-06 20 4773190 4773190 G A RASSF2 Missense_Mutation p.S124F 0.24 deleterious(0.02) benign(0.027) TCGA-W3-AA1V-06 20 47865547 47865547 G A ZNFX1 Silent p.F1338F 0.23 TCGA-W3-AA1V-06 20 47991001 47991001 C T KCNB1 Missense_Mutation p.A366T 0.33 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 20 47991527 47991527 G A KCNB1 Silent p.I190I 0.26 TCGA-W3-AA1V-06 20 48140639 48140639 C T PTGIS Missense_Mutation p.E271K 0.69 tolerated(0.24) benign(0.005) TCGA-W3-AA1V-06 20 48600730 48600730 G A SNAI1 Missense_Mutation p.R151Q 0.64 tolerated(0.16) benign(0.013) TCGA-W3-AA1V-06 20 49218975 49218975 G A FAM65C Silent p.F427F 0.10 TCGA-W3-AA1V-06 20 49219138 49219138 C T FAM65C Missense_Mutation p.G373D 0.21 tolerated(0.5) benign(0.005) TCGA-W3-AA1V-06 20 49576168 49576168 C T MOCS3 Silent p.I263I 0.40 TCGA-W3-AA1V-06 20 50217710 50217710 G A ATP9A 3'UTR 0.34 TCGA-W3-AA1V-06 20 50235267 50235267 G A ATP9A Missense_Mutation p.P762S 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 20 50307339 50307339 G A ATP9A Missense_Mutation p.S221L 0.30 tolerated(0.11) benign(0.013) TCGA-W3-AA1V-06 20 50400692 50400692 C T SALL4 3'UTR 0.21 TCGA-W3-AA1V-06 20 50406800 50406800 A T SALL4 Missense_Mutation p.F741Y 0.24 deleterious(0) benign(0.04) TCGA-W3-AA1V-06 20 50705556 50705556 C T ZFP64 Intron 0.50 TCGA-W3-AA1V-06 20 5099507 5099507 G A PCNA Missense_Mutation p.S76F 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-W3-AA1V-06 20 51870628 51870628 G T TSHZ2 Missense_Mutation p.G211W 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 51870859 51870859 C T TSHZ2 Nonsense_Mutation p.Q288* 0.28 TCGA-W3-AA1V-06 20 51870986 51870986 C T TSHZ2 Missense_Mutation p.P330L 0.53 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 20 52198369 52198369 G A ZNF217 Missense_Mutation p.L333F 0.25 tolerated(0.06) possibly_damaging(0.704) TCGA-W3-AA1V-06 20 52601914 52601914 G A BCAS1 Missense_Mutation p.S351F 0.48 deleterious(0.02) possibly_damaging(0.689) TCGA-W3-AA1V-06 20 52773747 52773747 C T CYP24A1 Missense_Mutation p.E506K 0.22 tolerated(0.08) benign(0.079) TCGA-W3-AA1V-06 20 5283319 5283319 G A PROKR2 Silent p.I174I 0.20 TCGA-W3-AA1V-06 20 55027386 55027386 C T CASS4 Missense_Mutation p.S385F 0.62 deleterious(0) probably_damaging(0.928) TCGA-W3-AA1V-06 20 55027725 55027725 G A CASS4 Missense_Mutation p.R498Q 0.52 tolerated(1) benign(0.01) TCGA-W3-AA1V-06 20 55208504 55208504 C T TFAP2C Missense_Mutation p.P228S 0.21 deleterious(0) benign(0.342) TCGA-W3-AA1V-06 20 55209240 55209240 G A TFAP2C Missense_Mutation p.E280K 0.20 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 20 55777571 55777571 C T BMP7 Silent p.R240R 0.37 TCGA-W3-AA1V-06 20 55909850 55909850 C T SPO11 Silent p.I185I 0.50 TCGA-W3-AA1V-06 20 56078532 56078532 C T CTCFL Silent p.K600K 0.12 TCGA-W3-AA1V-06 20 56137885 56137885 C T PCK1 Silent p.V180V 0.53 TCGA-W3-AA1V-06 20 56138116 56138116 G A PCK1 Missense_Mutation p.E215K 0.58 tolerated(0.09) benign(0.054) TCGA-W3-AA1V-06 20 57430168 57430168 C T GNAS Silent p.F616F 0.55 TCGA-W3-AA1V-06 20 57766864 57766864 G A ZNF831 Missense_Mutation p.E264K 0.26 deleterious(0.02) possibly_damaging(0.746) TCGA-W3-AA1V-06 20 57767385 57767385 G A ZNF831 Silent p.Q437Q 0.69 TCGA-W3-AA1V-06 20 57767889 57767889 G A ZNF831 Silent p.R605R 0.25 TCGA-W3-AA1V-06 20 57768994 57768994 G A ZNF831 Missense_Mutation p.E974K 0.49 tolerated(0.23) benign(0.036) TCGA-W3-AA1V-06 20 57782087 57782087 G A ZNF831 Missense_Mutation p.G1335R 0.35 tolerated(0.98) benign(0.006) TCGA-W3-AA1V-06 20 58441613 58441613 G A SYCP2 Missense_Mutation p.T1386M 0.28 deleterious(0.03) possibly_damaging(0.674) TCGA-W3-AA1V-06 20 60508087 60508087 G A CDH4 Missense_Mutation p.E762K 0.38 deleterious(0.03) probably_damaging(0.928) TCGA-W3-AA1V-06 20 60511861 60511861 G A CDH4 Missense_Mutation p.E871K 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 60573189 60573189 C T TAF4 Intron 0.58 TCGA-W3-AA1V-06 20 6065905 6065905 G A FERMT1 Silent p.A467A 0.21 TCGA-W3-AA1V-06 20 60791311 60791311 G A HRH3 Silent p.I363I 0.44 TCGA-W3-AA1V-06 20 60791946 60791946 C T HRH3 Missense_Mutation p.A152T 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-W3-AA1V-06 20 60907500 60907500 G A LAMA5 Silent p.D1160D 0.57 TCGA-W3-AA1V-06 20 6096571 6096571 G A FERMT1 Missense_Mutation p.T91I 0.22 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 20 6096662 6096662 G A FERMT1 Missense_Mutation p.L61F 0.20 deleterious(0.03) benign(0.12) TCGA-W3-AA1V-06 20 60994652 60994652 C T RBBP8NL Missense_Mutation p.E18K 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 61511483 61511483 G A DIDO1 Missense_Mutation p.P1942L 0.49 probably_damaging(0.997) TCGA-W3-AA1V-06 20 61512458 61512458 G A DIDO1 Missense_Mutation p.S1617F 0.24 benign(0.188) TCGA-W3-AA1V-06 20 61593975 61593975 G A SLC17A9 Splice_Site p.X166_splice 0.23 TCGA-W3-AA1V-06 20 61593976 61593976 G A SLC17A9 Silent p.G166G 0.22 TCGA-W3-AA1V-06 20 61937376 61937376 G A COL20A1 Missense_Mutation p.D161N 0.42 tolerated(0.18) benign(0.004) TCGA-W3-AA1V-06 20 61937407 61937407 G A COL20A1 Intron 0.52 TCGA-W3-AA1V-06 20 61943840 61943840 C T COL20A1 Silent p.V624V 0.24 TCGA-W3-AA1V-06 20 61981789 61981789 A T CHRNA4 Missense_Mutation p.V325D 0.46 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 20 61982256 61982256 G A CHRNA4 Silent p.P169P 0.22 TCGA-W3-AA1V-06 20 62038606 62038606 G A KCNQ2 Silent p.Y670Y 0.26 TCGA-W3-AA1V-06 20 62161536 62161536 C T PTK6 Missense_Mutation p.A355T 0.21 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 20 62173919 62173919 C T SRMS Missense_Mutation p.D221N 0.57 deleterious(0.01) probably_damaging(0.983) TCGA-W3-AA1V-06 20 62187538 62187538 G A C20orf195 Silent p.L174L 0.22 TCGA-W3-AA1V-06 20 62275180 62275180 G A STMN3 Missense_Mutation p.P74S 0.17 tolerated(0.22) benign(0.061) TCGA-W3-AA1V-06 20 62290761 62290761 C T RTEL1 Silent p.P2P 0.38 TCGA-W3-AA1V-06 20 62366688 62366688 C T ZGPAT Missense_Mutation p.A410V 0.38 deleterious(0.02) benign(0.009) TCGA-W3-AA1V-06 20 62407256 62407256 G A ZBTB46 Missense_Mutation p.L333F 0.36 tolerated(0.42) benign(0.005) TCGA-W3-AA1V-06 20 62562337 62562337 C T DNAJC5 Missense_Mutation p.P152L 0.26 tolerated(0.05) possibly_damaging(0.477) TCGA-W3-AA1V-06 20 62626377 62626377 C T PRPF6 Missense_Mutation p.P183S 0.34 deleterious(0.04) probably_damaging(0.983) TCGA-W3-AA1V-06 20 62729421 62729421 C T OPRL1 Missense_Mutation p.A167V 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 62853301 62853301 C T MYT1 Missense_Mutation p.S766L 0.29 benign(0.031) TCGA-W3-AA1V-06 20 6759105 6759105 C T BMP2 Missense_Mutation p.P187L 0.26 tolerated(0.11) probably_damaging(0.997) TCGA-W3-AA1V-06 20 6759223 6759223 C T BMP2 Silent p.F226F 0.33 TCGA-W3-AA1V-06 20 7875798 7875798 G A HAO1 Silent p.L265L 0.24 TCGA-W3-AA1V-06 20 8665694 8665694 C T PLCB1 Silent p.F326F 0.24 TCGA-W3-AA1V-06 20 8769159 8769159 G A PLCB1 Missense_Mutation p.E1059K 0.24 deleterious(0.01) benign(0.403) TCGA-W3-AA1V-06 20 9346111 9346111 G A PLCB4 Nonsense_Mutation p.W151* 0.21 TCGA-W3-AA1V-06 20 9370598 9370598 C T PLCB4 Missense_Mutation p.H411Y 0.20 deleterious(0) possibly_damaging(0.817) TCGA-W3-AA1V-06 20 9404474 9404474 C G PLCB4 Missense_Mutation p.P788R 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 9404521 9404521 G A PLCB4 Missense_Mutation p.E804K 0.17 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 20 9416290 9416290 G A PLCB4 Missense_Mutation p.E858K 0.31 deleterious(0.03) possibly_damaging(0.716) TCGA-W3-AA1V-06 20 948731 948731 C T RSPO4 Missense_Mutation p.E44K 0.28 deleterious(0.04) possibly_damaging(0.84) TCGA-W3-AA1V-06 20 9496135 9496135 G A LAMP5 Missense_Mutation p.E34K 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 9523368 9523368 C T PAK7 Splice_Site p.X624_splice 0.24 TCGA-W3-AA1V-06 20 9525085 9525085 C T PAK7 Silent p.R600R 0.23 TCGA-W3-AA1V-06 20 9525123 9525123 C T PAK7 Missense_Mutation p.G588S 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 20 9546627 9546627 G A PAK7 Silent p.I465I 0.19 TCGA-W3-AA1V-06 21 10862968 10862968 C T IGHV1OR21-1 Silent p.T88T 0.17 TCGA-W3-AA1V-06 21 10906835 10906835 G A TPTE 3'UTR 0.25 TCGA-W3-AA1V-06 21 10906990 10906990 C T TPTE Missense_Mutation p.R524Q 0.40 deleterious(0) benign(0.278) TCGA-W3-AA1V-06 21 10921986 10921986 C T TPTE Missense_Mutation p.G346E 0.26 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 21 10973731 10973731 C T TPTE Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1V-06 21 10998223 10998223 C T TPTE RNA 0.22 TCGA-W3-AA1V-06 21 11038844 11038844 G A BAGE2 RNA 0.23 TCGA-W3-AA1V-06 21 11038955 11038955 G A BAGE2 RNA 0.05 TCGA-W3-AA1V-06 21 11097602 11097602 C T BAGE2 RNA 0.11 TCGA-W3-AA1V-06 21 15317427 15317427 T G ANKRD20A11P RNA 0.30 TCGA-W3-AA1V-06 21 15537711 15537711 C T LIPI Missense_Mutation p.G266E 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 21 15599629 15599629 G A RBM11 3'UTR 0.19 TCGA-W3-AA1V-06 21 16336923 16336923 G A NRIP1 3'UTR 0.20 TCGA-W3-AA1V-06 21 18937757 18937757 C A CXADR Missense_Mutation p.P282Q 0.45 deleterious(0.02) probably_damaging(0.973) TCGA-W3-AA1V-06 21 19698777 19698777 A G TMPRSS15 Silent p.F631F 0.61 TCGA-W3-AA1V-06 21 27840731 27840731 G A CYYR1 3'UTR 0.32 TCGA-W3-AA1V-06 21 27840748 27840748 C T CYYR1 3'UTR 0.41 TCGA-W3-AA1V-06 21 28210587 28210587 G A ADAMTS1 Missense_Mutation p.H739Y 0.26 deleterious(0) possibly_damaging(0.723) TCGA-W3-AA1V-06 21 28337633 28337633 C T ADAMTS5 Missense_Mutation p.D360N 0.28 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 21 30308905 30308905 C A LTN1 Missense_Mutation p.V1579F 0.27 tolerated(0.4) benign(0.005) TCGA-W3-AA1V-06 21 30339099 30339099 G A LTN1 Missense_Mutation p.P618S 0.28 tolerated(0.34) benign(0.003) TCGA-W3-AA1V-06 21 30343025 30343025 G A LTN1 Missense_Mutation p.P388S 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 21 31797757 31797757 G A KRTAP13-3 Silent p.F158F 0.46 TCGA-W3-AA1V-06 21 33044634 33044634 C T SCAF4 Missense_Mutation p.G841E 0.42 unknown(0) TCGA-W3-AA1V-06 21 33684221 33684221 G A MRAP Missense_Mutation p.E145K 0.21 tolerated(0.16) benign(0.002) TCGA-W3-AA1V-06 21 34011395 34011395 A T SYNJ1 Silent p.A1285A 0.36 TCGA-W3-AA1V-06 21 34037292 34037292 G A SYNJ1 Silent p.L784L 0.41 TCGA-W3-AA1V-06 21 34037365 34037365 G A SYNJ1 Missense_Mutation p.S760F 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-W3-AA1V-06 21 34117138 34117138 G A PAXBP1 Missense_Mutation p.P719S 0.22 deleterious(0.03) possibly_damaging(0.71) TCGA-W3-AA1V-06 21 34793988 34793988 G A IFNGR2 Silent p.R136R 0.14 TCGA-W3-AA1V-06 21 34809187 34809187 C T IFNGR2 Missense_Mutation p.S311L 0.38 deleterious(0.04) benign(0.142) TCGA-W3-AA1V-06 21 35743095 35743095 G A KCNE2 Silent p.S106S 0.28 TCGA-W3-AA1V-06 21 36081812 36081812 C T CLIC6 Silent p.L625L 0.54 TCGA-W3-AA1V-06 21 36088652 36088652 C T CLIC6 Missense_Mutation p.P645S 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 21 37442728 37442728 C T CBR1 Intron 0.45 TCGA-W3-AA1V-06 21 37612225 37612225 C T DOPEY2 Silent p.I1013I 0.60 TCGA-W3-AA1V-06 21 37620845 37620845 C T DOPEY2 Silent p.S1659S 0.27 TCGA-W3-AA1V-06 21 38437902 38437902 C T PIGP Missense_Mutation p.E153K 0.22 tolerated(0.28) benign(0.004) TCGA-W3-AA1V-06 21 38544898 38544898 G A TTC3 Missense_Mutation p.G1490E 0.56 deleterious(0) probably_damaging(0.97) TCGA-W3-AA1V-06 21 39086743 39086743 G A KCNJ6 Silent p.A239A 0.23 TCGA-W3-AA1V-06 21 40186218 40186218 C T ETS2 Missense_Mutation p.P69L 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 21 40191540 40191540 C T ETS2 Missense_Mutation p.P309S 0.26 deleterious(0.01) possibly_damaging(0.637) TCGA-W3-AA1V-06 21 41151233 41151233 G T IGSF5 Splice_Site p.X312_splice 0.21 TCGA-W3-AA1V-06 21 41414529 41414529 C T DSCAM Missense_Mutation p.E1819K 0.48 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 21 41423997 41423997 A G DSCAM Silent p.F1691F 0.16 TCGA-W3-AA1V-06 21 41459205 41459205 C T DSCAM Missense_Mutation p.R1287Q 0.20 tolerated(0.05) possibly_damaging(0.605) TCGA-W3-AA1V-06 21 41710177 41710177 G A DSCAM Missense_Mutation p.P545L 0.09 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 21 41711193 41711193 G A DSCAM Missense_Mutation p.R454C 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-W3-AA1V-06 21 41719705 41719705 C T DSCAM Missense_Mutation p.E368K 0.49 tolerated(0.11) probably_damaging(0.993) TCGA-W3-AA1V-06 21 41741116 41741116 C T DSCAM Missense_Mutation p.E189K 0.14 tolerated(0.16) probably_damaging(0.986) TCGA-W3-AA1V-06 21 42080414 42080414 C T DSCAM Silent p.G109G 0.44 TCGA-W3-AA1V-06 21 42694779 42694779 G A FAM3B Intron 0.30 TCGA-W3-AA1V-06 21 42754398 42754398 C T MX2 Silent p.I213I 0.22 TCGA-W3-AA1V-06 21 43230590 43230590 C T PRDM15 Missense_Mutation p.A1224T 0.53 deleterious(0.02) probably_damaging(0.961) TCGA-W3-AA1V-06 21 43496228 43496228 G A UMODL1 Nonsense_Mutation p.W64* 0.23 TCGA-W3-AA1V-06 21 43905909 43905909 C T RSPH1 Missense_Mutation p.G124E 0.12 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 21 44151899 44151899 A G PDE9A Silent p.R94R 0.39 TCGA-W3-AA1V-06 21 44483072 44483072 C T CBS Silent p.L315L 0.57 TCGA-W3-AA1V-06 21 44514850 44514850 G A U2AF1 Missense_Mutation p.R133C 0.32 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 21 44840207 44840207 G A SIK1 Silent p.S293S 0.23 TCGA-W3-AA1V-06 21 45213231 45213231 C T RRP1 Silent p.T102T 0.24 TCGA-W3-AA1V-06 21 45479067 45479067 T A TRAPPC10 Silent p.S254S 0.27 TCGA-W3-AA1V-06 21 45540551 45540551 C T PWP2 Silent p.T459T 0.26 TCGA-W3-AA1V-06 21 45666369 45666369 T C DNMT3L Missense_Mutation p.K359E 0.20 tolerated(0.23) benign(0.001) TCGA-W3-AA1V-06 21 45706441 45706441 A T AIRE Missense_Mutation p.E45V 0.40 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 21 45706442 45706442 G A AIRE Silent p.E45E 0.43 TCGA-W3-AA1V-06 21 45819208 45819208 G A TRPM2 Missense_Mutation p.E698K 0.40 deleterious(0.01) probably_damaging(0.97) TCGA-W3-AA1V-06 21 45833946 45833946 C T TRPM2 Silent p.I1045I 0.46 TCGA-W3-AA1V-06 21 45928756 45928756 C T TSPEAR Intron 0.67 TCGA-W3-AA1V-06 21 45945561 45945561 G A TSPEAR Silent p.F437F 0.26 TCGA-W3-AA1V-06 21 45947199 45947199 C T TSPEAR Nonsense_Mutation p.W375* 0.55 TCGA-W3-AA1V-06 21 45953714 45953714 G A TSPEAR Silent p.F132F 0.32 TCGA-W3-AA1V-06 21 46021048 46021048 C T KRTAP10-7 Missense_Mutation p.S176L 0.22 tolerated(0.44) unknown(0) TCGA-W3-AA1V-06 21 46032841 46032841 C T KRTAP10-8 3'UTR 0.24 TCGA-W3-AA1V-06 21 46066500 46066500 C T KRTAP10-11 Missense_Mutation p.S42F 0.24 deleterious(0) unknown(0) TCGA-W3-AA1V-06 21 46066657 46066657 C T KRTAP10-11 Silent p.P94P 0.20 TCGA-W3-AA1V-06 21 46067341 46067341 C T KRTAP10-11 3'UTR 0.30 TCGA-W3-AA1V-06 21 46117502 46117502 C T KRTAP10-12 Missense_Mutation p.S129F 0.30 deleterious(0.03) unknown(0) TCGA-W3-AA1V-06 21 46117685 46117685 G A KRTAP10-12 Missense_Mutation p.R190K 0.26 tolerated(0.24) unknown(0) TCGA-W3-AA1V-06 21 46314966 46314966 C T ITGB2 Missense_Mutation p.E335K 0.27 tolerated(0.7) benign(0.034) TCGA-W3-AA1V-06 21 46363674 46363674 C T FAM207A Silent p.L69L 0.24 TCGA-W3-AA1V-06 21 46596481 46596481 G C ADARB1 Missense_Mutation p.A289P 0.54 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 21 46596488 46596488 C T ADARB1 Missense_Mutation p.S291F 0.56 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 21 46624608 46624608 G A ADARB1 Silent p.E608E 0.25 TCGA-W3-AA1V-06 21 46896302 46896302 C T COL18A1 Missense_Mutation p.P459L 0.21 unknown(0) TCGA-W3-AA1V-06 21 47360034 47360034 G A PCBP3 Missense_Mutation p.E334K 0.22 deleterious(0) possibly_damaging(0.728) TCGA-W3-AA1V-06 21 47423828 47423828 G A COL6A1 Silent p.V996V 0.47 TCGA-W3-AA1V-06 21 47532455 47532455 C T COL6A2 Silent p.I226I 0.28 TCGA-W3-AA1V-06 21 47746321 47746321 G A PCNT Missense_Mutation p.G29S 0.40 probably_damaging(0.934) TCGA-W3-AA1V-06 21 47851550 47851550 C T PCNT Silent p.I2724I 0.32 TCGA-W3-AA1V-06 21 47961734 47961734 G A DIP2A Missense_Mutation p.G701D 0.26 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1V-06 22 16279248 16279248 C T POTEH Silent p.V325V 0.10 TCGA-W3-AA1V-06 22 16279263 16279263 T A POTEH Missense_Mutation p.Q320H 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1V-06 22 16449569 16449569 C T OR11H1 Missense_Mutation p.G79E 0.27 deleterious(0.01) possibly_damaging(0.461) TCGA-W3-AA1V-06 22 17072910 17072910 C T CCT8L2 Missense_Mutation p.M177I 0.20 tolerated(0.18) benign(0.01) TCGA-W3-AA1V-06 22 17990882 17990882 C T CECR2 Missense_Mutation p.P262L 0.24 deleterious(0.03) possibly_damaging(0.448) TCGA-W3-AA1V-06 22 18384737 18384737 A G MICAL3 Missense_Mutation p.W200R 0.63 probably_damaging(1) TCGA-W3-AA1V-06 22 19052576 19052576 G A DGCR2 Silent p.F111F 0.20 TCGA-W3-AA1V-06 22 19055727 19055727 C T DGCR2 Missense_Mutation p.E72K 0.43 tolerated_low_confidence(0.1) benign(0.001) TCGA-W3-AA1V-06 22 19171093 19171093 T A CLTCL1 Missense_Mutation p.D1546V 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-W3-AA1V-06 22 19344485 19344485 G A HIRA Missense_Mutation p.S775F 0.22 deleterious(0) possibly_damaging(0.562) TCGA-W3-AA1V-06 22 20077595 20077595 G T DGCR8 Missense_Mutation p.G374W 0.47 deleterious(0) possibly_damaging(0.599) TCGA-W3-AA1V-06 22 20230065 20230065 G A RTN4R Silent p.A197A 0.56 TCGA-W3-AA1V-06 22 20457339 20457339 T A RIMBP3 Missense_Mutation p.K1321N 0.26 tolerated(0.06) benign(0.39) TCGA-W3-AA1V-06 22 20457382 20457382 G A RIMBP3 Missense_Mutation p.P1307L 0.36 tolerated(0.2) benign(0.009) TCGA-W3-AA1V-06 22 20755036 20755036 C T ZNF74 Missense_Mutation p.L79F 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-W3-AA1V-06 22 20862016 20862016 G A MED15 Silent p.Q17Q 0.16 TCGA-W3-AA1V-06 22 20920851 20920851 C T MED15 Missense_Mutation p.A263V 0.19 tolerated_low_confidence(1) unknown(0) TCGA-W3-AA1V-06 22 21088716 21088716 G A PI4KA Silent p.P1289P 0.28 TCGA-W3-AA1V-06 22 21101959 21101959 G A PI4KA Missense_Mutation p.S1092L 0.60 deleterious(0.01) benign(0.217) TCGA-W3-AA1V-06 22 21140431 21140431 G A SERPIND1 Missense_Mutation p.D435N 0.16 tolerated(0.66) benign(0.002) TCGA-W3-AA1V-06 22 21156281 21156281 G A PI4KA Silent p.I568I 0.32 TCGA-W3-AA1V-06 22 21340151 21340151 C T LZTR1 Silent p.L95L 0.30 TCGA-W3-AA1V-06 22 21363671 21363671 G A AC002472.1 5'Flank 0.14 TCGA-W3-AA1V-06 22 21384048 21384048 G A SLC7A4 Silent p.L525L 0.27 TCGA-W3-AA1V-06 22 21989447 21989447 C T CCDC116 Silent p.S365S 0.38 TCGA-W3-AA1V-06 22 22029352 22029352 G A PPIL2 Splice_Site p.X82_splice 0.27 TCGA-W3-AA1V-06 22 22285586 22285586 G A PPM1F Silent p.S275S 0.52 TCGA-W3-AA1V-06 22 22569437 22569437 G A IGLV10-54 Silent p.G43G 0.30 TCGA-W3-AA1V-06 22 22730707 22730707 C G IGLV5-45 Missense_Mutation p.L68V 0.26 deleterious(0.03) possibly_damaging(0.597) TCGA-W3-AA1V-06 22 22989309 22989309 G A GGTLC2 Missense_Mutation p.E88K 0.23 tolerated(0.84) benign(0.003) TCGA-W3-AA1V-06 22 23406124 23406124 G A RTDR1 Silent p.N203N 0.26 TCGA-W3-AA1V-06 22 24515431 24515431 C T CABIN1 Silent p.I1466I 0.36 TCGA-W3-AA1V-06 22 24579135 24579135 C T SUSD2 Silent p.L63L 0.17 TCGA-W3-AA1V-06 22 24829609 24829609 C T ADORA2A Silent p.F79F 0.43 TCGA-W3-AA1V-06 22 25019823 25019823 C T GGT1 Silent p.F320F 0.19 TCGA-W3-AA1V-06 22 25023936 25023936 C T GGT1 Silent p.F442F 0.24 TCGA-W3-AA1V-06 22 25294139 25294139 C T SGSM1 Silent p.A796A 0.25 TCGA-W3-AA1V-06 22 25294512 25294512 G A SGSM1 Missense_Mutation p.G921S 0.28 deleterious(0.04) probably_damaging(0.919) TCGA-W3-AA1V-06 22 25620887 25620887 C T CRYBB2 Silent p.I19I 0.26 TCGA-W3-AA1V-06 22 26228928 26228928 G A MYO18B Silent p.G1008G 0.21 TCGA-W3-AA1V-06 22 26239825 26239825 C T MYO18B Missense_Mutation p.A1111V 0.23 tolerated(0.06) possibly_damaging(0.897) TCGA-W3-AA1V-06 22 26422476 26422476 C T MYO18B Missense_Mutation p.S2179F 0.25 deleterious(0.02) benign(0.038) TCGA-W3-AA1V-06 22 26423272 26423272 C T MYO18B Silent p.F2444F 0.23 TCGA-W3-AA1V-06 22 26688587 26688587 C T SEZ6L Missense_Mutation p.P104S 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-W3-AA1V-06 22 26694954 26694954 C T SEZ6L Silent p.F389F 0.33 TCGA-W3-AA1V-06 22 26695021 26695021 G A SEZ6L Missense_Mutation p.G412S 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 22 26707849 26707849 C T SEZ6L Silent p.S599S 0.44 TCGA-W3-AA1V-06 22 26747038 26747038 G A SEZ6L Missense_Mutation p.G810R 0.24 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 22 26761383 26761383 G A SEZ6L Missense_Mutation p.G882E 0.31 deleterious(0) probably_damaging(0.956) TCGA-W3-AA1V-06 22 26995551 26995551 G A CRYBB1 Missense_Mutation p.A221V 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1V-06 22 26995555 26995555 C T CRYBB1 Missense_Mutation p.G220R 0.54 deleterious(0) probably_damaging(0.956) TCGA-W3-AA1V-06 22 27012188 27012188 G A CRYBB1 Silent p.S32S 0.18 TCGA-W3-AA1V-06 22 29446181 29446181 C T ZNRF3 Missense_Mutation p.S671F 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 22 29456470 29456470 C T C22orf31 Missense_Mutation p.R122K 0.16 deleterious(0.04) possibly_damaging(0.54) TCGA-W3-AA1V-06 22 29708477 29708477 C T GAS2L1 3'Flank 0.24 TCGA-W3-AA1V-06 22 29750761 29750761 C T AP1B1 Silent p.K272K 0.26 TCGA-W3-AA1V-06 22 29935407 29935407 G A THOC5 Missense_Mutation p.P171S 0.26 tolerated(0.23) benign(0.002) TCGA-W3-AA1V-06 22 29966456 29966456 C T NIPSNAP1 Missense_Mutation p.R55Q 0.16 deleterious(0.04) benign(0.324) TCGA-W3-AA1V-06 22 30198133 30198133 G A ASCC2 Missense_Mutation p.S473F 0.20 deleterious(0.03) benign(0.098) TCGA-W3-AA1V-06 22 30572111 30572111 G A HORMAD2 Silent p.R293R 0.45 TCGA-W3-AA1V-06 22 30660370 30660370 C T OSM Silent p.L87L 0.59 TCGA-W3-AA1V-06 22 30722851 30722851 T G TBC1D10A Missense_Mutation p.E7A 0.44 tolerated_low_confidence(0.35) benign(0.05) TCGA-W3-AA1V-06 22 30742352 30742352 G A SF3A1 Silent p.P114P 0.32 TCGA-W3-AA1V-06 22 30860847 30860847 G A SEC14L3 Silent p.F208F 0.28 TCGA-W3-AA1V-06 22 31685336 31685336 G A PIK3IP1 Silent p.I184I 0.21 TCGA-W3-AA1V-06 22 31844183 31844183 G A EIF4ENIF1 Missense_Mutation p.P602S 0.29 tolerated(0.15) possibly_damaging(0.739) TCGA-W3-AA1V-06 22 31924748 31924748 C T SFI1 Silent p.S55S 0.55 TCGA-W3-AA1V-06 22 32495180 32495180 C T SLC5A1 Silent p.L431L 0.29 TCGA-W3-AA1V-06 22 32548614 32548614 C A C22orf42 Splice_Site p.X103_splice 0.45 TCGA-W3-AA1V-06 22 32555106 32555106 G A C22orf42 Missense_Mutation p.P33S 0.22 tolerated_low_confidence(0.51) possibly_damaging(0.803) TCGA-W3-AA1V-06 22 32756479 32756479 G A RFPL3 Missense_Mutation p.G205E 0.24 tolerated(0.22) probably_damaging(1) TCGA-W3-AA1V-06 22 32810265 32810265 C T BPIFC 3'UTR 0.52 TCGA-W3-AA1V-06 22 33376675 33376675 G A SYN3 Silent p.F108F 0.20 TCGA-W3-AA1V-06 22 33828226 33828226 C T LARGE Silent p.E271E 0.39 TCGA-W3-AA1V-06 22 34046608 34046608 G A LARGE Silent p.S51S 0.21 TCGA-W3-AA1V-06 22 35478645 35478645 C T ISX Missense_Mutation p.P122S 0.26 tolerated(0.06) probably_damaging(0.992) TCGA-W3-AA1V-06 22 35481519 35481519 C T ISX Nonsense_Mutation p.Q191* 0.25 TCGA-W3-AA1V-06 22 35947762 35947762 G A RASD2 Missense_Mutation p.G162S 0.37 tolerated(0.76) benign(0.005) TCGA-W3-AA1V-06 22 36122919 36122919 C A APOL5 Silent p.I268I 0.21 TCGA-W3-AA1V-06 22 36124771 36124771 G A APOL5 Silent p.G376G 0.15 TCGA-W3-AA1V-06 22 36653169 36653169 G A APOL1 Missense_Mutation p.E45K 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-W3-AA1V-06 22 36653365 36653365 G A APOL1 Silent p.R49R 0.23 TCGA-W3-AA1V-06 22 36702014 36702014 G A MYH9 Silent p.G707G 0.21 TCGA-W3-AA1V-06 22 36900296 36900296 G A FOXRED2 Missense_Mutation p.P300S 0.47 tolerated(0.26) benign(0) TCGA-W3-AA1V-06 22 37271910 37271910 C T NCF4 Silent p.S281S 0.29 TCGA-W3-AA1V-06 22 37319375 37319375 C T CSF2RB Missense_Mutation p.L56F 0.24 tolerated(0.2) benign(0.025) TCGA-W3-AA1V-06 22 37449139 37449139 G A KCTD17 Splice_Site p.X71_splice 0.25 TCGA-W3-AA1V-06 22 37524274 37524274 C T IL2RB Silent p.R506R 0.35 TCGA-W3-AA1V-06 22 37524553 37524553 C T IL2RB Silent p.G413G 0.24 TCGA-W3-AA1V-06 22 37524554 37524554 C T IL2RB Missense_Mutation p.G413E 0.24 tolerated(0.05) benign(0.059) TCGA-W3-AA1V-06 22 37578564 37578564 C T C1QTNF6 Silent p.R167R 0.31 TCGA-W3-AA1V-06 22 37602956 37602956 A G SSTR3 Missense_Mutation p.F296S 0.53 tolerated(0.18) benign(0.326) TCGA-W3-AA1V-06 22 37705262 37705262 G A CYTH4 Missense_Mutation p.D236N 0.33 tolerated(0.08) benign(0.012) TCGA-W3-AA1V-06 22 37769175 37769175 C T ELFN2 Silent p.K800K 0.20 TCGA-W3-AA1V-06 22 37891953 37891953 G A CARD10 Missense_Mutation p.P706L 0.18 deleterious(0.01) benign(0.021) TCGA-W3-AA1V-06 22 37898684 37898684 G A CARD10 Missense_Mutation p.S571F 0.27 tolerated(0.14) possibly_damaging(0.851) TCGA-W3-AA1V-06 22 38111882 38111882 C T TRIOBP Missense_Mutation p.A190V 0.41 tolerated_low_confidence(0.16) benign(0.002) TCGA-W3-AA1V-06 22 38120002 38120002 C T TRIOBP Missense_Mutation p.S480F 0.12 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-W3-AA1V-06 22 38120296 38120296 C T TRIOBP Missense_Mutation p.S578F 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.804) TCGA-W3-AA1V-06 22 38120682 38120682 A T TRIOBP Nonsense_Mutation p.R707* 0.38 TCGA-W3-AA1V-06 22 38121553 38121553 C T TRIOBP Missense_Mutation p.P997L 0.28 deleterious_low_confidence(0.03) benign(0.015) TCGA-W3-AA1V-06 22 38245382 38245382 G A EIF3L 5'UTR 0.56 TCGA-W3-AA1V-06 22 38536013 38536013 G A PLA2G6 Missense_Mutation p.S258L 0.28 deleterious(0.03) benign(0.001) TCGA-W3-AA1V-06 22 39077956 39077956 C T TOMM22 5'UTR 0.50 TCGA-W3-AA1V-06 22 39262731 39262731 G A CBX6 Missense_Mutation p.P241L 0.32 deleterious(0) benign(0.116) TCGA-W3-AA1V-06 22 39814829 39814829 C T TAB1 Missense_Mutation p.L215F 0.42 deleterious(0.01) possibly_damaging(0.886) TCGA-W3-AA1V-06 22 40066135 40066135 C T CACNA1I Silent p.V1429V 0.30 TCGA-W3-AA1V-06 22 40755009 40755009 C T ADSL Silent p.F208F 0.23 TCGA-W3-AA1V-06 22 40820312 40820312 G T MKL1 Silent p.P125P 0.47 TCGA-W3-AA1V-06 22 41997161 41997161 G A DESI1 Silent p.D149D 0.33 TCGA-W3-AA1V-06 22 42159236 42159236 G A MEI1 Missense_Mutation p.D727N 0.39 deleterious(0.04) benign(0.016) TCGA-W3-AA1V-06 22 42191507 42191507 G A MEI1 Silent p.S1209S 0.37 TCGA-W3-AA1V-06 22 42422828 42422828 C T WBP2NL Silent p.A191A 0.25 TCGA-W3-AA1V-06 22 42611342 42611342 G A TCF20 5'UTR 0.15 TCGA-W3-AA1V-06 22 42793950 42793950 C T NFAM1 Missense_Mutation p.G193S 0.14 tolerated(0.14) benign(0.008) TCGA-W3-AA1V-06 22 43658850 43658850 C T SCUBE1 Silent p.E162E 0.34 TCGA-W3-AA1V-06 22 43831068 43831068 G A MPPED1 Silent p.L113L 0.32 TCGA-W3-AA1V-06 22 43898542 43898542 C T MPPED1 Missense_Mutation p.P256L 0.23 tolerated(0.73) benign(0.212) TCGA-W3-AA1V-06 22 44178114 44178114 G A EFCAB6 Missense_Mutation p.P29S 0.49 deleterious(0.03) benign(0.4) TCGA-W3-AA1V-06 22 44283494 44283494 G A PNPLA5 Missense_Mutation p.A247V 0.28 deleterious(0) possibly_damaging(0.798) TCGA-W3-AA1V-06 22 44342250 44342250 G A PNPLA3 Silent p.E478E 0.20 TCGA-W3-AA1V-06 22 44581685 44581685 C T PARVG Intron 0.56 TCGA-W3-AA1V-06 22 45128247 45128247 C T PRR5 Silent p.I200I 0.30 TCGA-W3-AA1V-06 22 45133095 45133095 G A PRR5 Missense_Mutation p.E402K 0.50 tolerated_low_confidence(0.12) benign(0.086) TCGA-W3-AA1V-06 22 45595852 45595852 G A KIAA0930 Missense_Mutation p.S311F 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-W3-AA1V-06 22 45785650 45785650 C T SMC1B Missense_Mutation p.R558Q 0.17 tolerated(1) benign(0.036) TCGA-W3-AA1V-06 22 46319123 46319123 G A WNT7B Silent p.F221F 0.39 TCGA-W3-AA1V-06 22 46655190 46655190 G A PKDREJ Missense_Mutation p.H1344Y 0.21 tolerated(1) benign(0.014) TCGA-W3-AA1V-06 22 46722542 46722542 C T GTSE1 Missense_Mutation p.S572F 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-W3-AA1V-06 22 46749683 46749683 G A TRMU Silent p.L264L 0.23 TCGA-W3-AA1V-06 22 46835213 46835213 G A CELSR1 Missense_Mutation p.H1427Y 0.44 tolerated(0.25) possibly_damaging(0.625) TCGA-W3-AA1V-06 22 47087514 47087514 G A CERK Silent p.F429F 0.19 TCGA-W3-AA1V-06 22 50278590 50278590 C T ZBED4 Missense_Mutation p.S427F 0.20 tolerated(0.09) probably_damaging(0.928) TCGA-W3-AA1V-06 22 50480094 50480094 C T TTLL8 Silent p.E298E 0.21 TCGA-W3-AA1V-06 22 50547112 50547112 G A MOV10L1 Silent p.R194R 0.24 TCGA-W3-AA1V-06 22 50591549 50591549 G A MOV10L1 Missense_Mutation p.E990K 0.22 deleterious(0.02) possibly_damaging(0.812) TCGA-W3-AA1V-06 22 50596505 50596505 G A MOV10L1 Missense_Mutation p.G1029E 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-W3-AA1V-06 22 50688972 50688972 C T HDAC10 Intron 0.52 TCGA-W3-AA1V-06 22 50926733 50926733 G A MIOX Missense_Mutation p.D124N 0.29 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1V-06 22 50988335 50988335 C T KLHDC7B Silent p.F580F 0.30 TCGA-W3-AA1V-06 22 51064096 51064096 G A ARSA Missense_Mutation p.S374F 0.40 tolerated(0.09) possibly_damaging(0.864) TCGA-W3-AA1V-06 22 51220725 51220725 G A RABL2B 5'UTR 0.15 TCGA-W3-AA1V-06 22 51237276 51237276 C T RPL23AP82 RNA 0.38 TCGA-W3-AA1V-06 2 100925685 100925685 G A LONRF2 Missense_Mutation p.P228S 0.30 deleterious(0.03) probably_damaging(0.961) TCGA-W3-AA1V-06 2 101019058 101019058 G A CHST10 Missense_Mutation p.P54S 0.45 tolerated(0.26) benign(0.001) TCGA-W3-AA1V-06 2 10136524 10136524 G A GRHL1 Missense_Mutation p.E558K 0.25 tolerated(0.07) probably_damaging(0.993) TCGA-W3-AA1V-06 2 101885824 101885824 G A CNOT11 Silent p.L494L 0.22 TCGA-W3-AA1V-06 2 101967215 101967215 A T CREG2 3'UTR 0.50 TCGA-W3-AA1V-06 2 10263601 10263601 C T RRM2 Missense_Mutation p.H148Y 0.20 deleterious_low_confidence(0.02) benign(0.006) TCGA-W3-AA1V-06 2 102835453 102835453 G A IL1RL2 Silent p.K255K 0.28 TCGA-W3-AA1V-06 2 102835454 102835454 G A IL1RL2 Missense_Mutation p.D256N 0.78 tolerated(0.31) benign(0.02) TCGA-W3-AA1V-06 2 102984424 102984424 G A IL18R1 Silent p.V66V 0.20 TCGA-W3-AA1V-06 2 103061676 103061676 C T IL18RAP Silent p.I316I 0.45 TCGA-W3-AA1V-06 2 103148791 103148791 G A SLC9A4 Missense_Mutation p.D681N 0.22 tolerated(0.21) benign(0.002) TCGA-W3-AA1V-06 2 103149163 103149163 G A SLC9A4 3'UTR 0.17 TCGA-W3-AA1V-06 2 103274133 103274133 C T SLC9A2 Missense_Mutation p.P134S 0.22 deleterious(0) possibly_damaging(0.801) TCGA-W3-AA1V-06 2 103300738 103300738 G A SLC9A2 Silent p.R456R 0.44 TCGA-W3-AA1V-06 2 103300739 103300739 A T SLC9A2 Nonsense_Mutation p.K457* 0.44 TCGA-W3-AA1V-06 2 103335088 103335088 G A MFSD9 Nonsense_Mutation p.Q406* 0.72 TCGA-W3-AA1V-06 2 10350702 10350702 C T C2orf48 Silent p.L153L 0.23 TCGA-W3-AA1V-06 2 10583864 10583864 C T ODC1 Missense_Mutation p.R183Q 0.16 tolerated(0.64) benign(0.013) TCGA-W3-AA1V-06 2 105858435 105858435 G A GPR45 Silent p.V40V 0.22 TCGA-W3-AA1V-06 2 106690397 106690397 C T C2orf40 Silent p.F61F 0.52 TCGA-W3-AA1V-06 2 107041134 107041134 T C RGPD3 Missense_Mutation p.R1097G 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.25 tolerated(0.11) benign(0.012) TCGA-W3-AA1V-06 2 10729243 10729243 G A NOL10 Silent p.P590P 0.25 TCGA-W3-AA1V-06 2 107423220 107423220 C T ST6GAL2 Missense_Mutation p.D502N 0.58 possibly_damaging(0.85) TCGA-W3-AA1V-06 2 107459497 107459497 C T ST6GAL2 Missense_Mutation p.E313K 0.50 probably_damaging(0.936) TCGA-W3-AA1V-06 2 108476256 108476256 T A RGPD4 Silent p.L571L 0.17 TCGA-W3-AA1V-06 2 108476257 108476257 C T RGPD4 Nonsense_Mutation p.Q572* 0.17 TCGA-W3-AA1V-06 2 108487265 108487265 G A RGPD4 Silent p.K935K 0.30 TCGA-W3-AA1V-06 2 108488658 108488658 G A RGPD4 Missense_Mutation p.D1400N 0.47 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 2 108488734 108488734 G A RGPD4 Missense_Mutation p.R1425K 0.16 tolerated(0.58) probably_damaging(0.933) TCGA-W3-AA1V-06 2 108489104 108489104 A G RGPD4 Silent p.R1548R 0.15 TCGA-W3-AA1V-06 2 108625004 108625004 C T SLC5A7 Missense_Mutation p.L327F 0.22 deleterious(0) probably_damaging(0.976) TCGA-W3-AA1V-06 2 10866644 10866644 C T ATP6V1C2 Missense_Mutation p.S49F 0.50 tolerated(0.06) possibly_damaging(0.629) TCGA-W3-AA1V-06 2 108910228 108910228 C T SULT1C2 Silent p.F35F 0.39 TCGA-W3-AA1V-06 2 109002772 109002772 A C SULT1C4 Missense_Mutation p.Y247S 0.45 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 2 109002779 109002779 G A SULT1C4 Silent p.S249S 0.27 TCGA-W3-AA1V-06 2 109086302 109086302 C T GCC2 Nonsense_Mutation p.Q173* 0.19 TCGA-W3-AA1V-06 2 109124010 109124010 C T GCC2 Intron 0.31 TCGA-W3-AA1V-06 2 109124011 109124011 C T GCC2 Intron 0.32 TCGA-W3-AA1V-06 2 109374913 109374913 C T RANBP2 Silent p.S837S 0.22 TCGA-W3-AA1V-06 2 109382705 109382705 G A RANBP2 Missense_Mutation p.E1904K 0.21 deleterious(0) benign(0.013) TCGA-W3-AA1V-06 2 109383938 109383938 C T RANBP2 Missense_Mutation p.P2315S 0.43 tolerated(0.11) benign(0.027) TCGA-W3-AA1V-06 2 109539849 109539849 G A EDAR Silent p.L139L 0.19 TCGA-W3-AA1V-06 2 110303537 110303537 G A SEPT10 Intron 0.67 TCGA-W3-AA1V-06 2 11053675 11053675 G A KCNF1 Missense_Mutation p.D375N 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 111753489 111753489 G A ACOXL Missense_Mutation p.D397N 0.35 deleterious(0.05) benign(0.013) TCGA-W3-AA1V-06 2 112566581 112566581 G A ANAPC1 Missense_Mutation p.L1259F 0.24 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 112705122 112705122 C T MERTK Silent p.S245S 0.43 TCGA-W3-AA1V-06 2 112785959 112785959 G A MERTK Missense_Mutation p.D840N 0.29 tolerated(0.47) benign(0.049) TCGA-W3-AA1V-06 2 113309567 113309567 C T POLR1B Silent p.F326F 0.29 TCGA-W3-AA1V-06 2 113343576 113343576 C T CHCHD5 Missense_Mutation p.R10C 0.28 deleterious(0) probably_damaging(0.98) TCGA-W3-AA1V-06 2 113496566 113496566 G A CKAP2L Missense_Mutation p.S691L 0.26 tolerated(0.5) benign(0.002) TCGA-W3-AA1V-06 2 113676257 113676257 C T IL37 Silent p.F176F 0.23 TCGA-W3-AA1V-06 2 113832812 113832812 C T IL1F10 Silent p.F110F 0.42 TCGA-W3-AA1V-06 2 113951444 113951444 G A PSD4 Silent p.G700G 0.26 TCGA-W3-AA1V-06 2 114258148 114258148 C T FOXD4L1 3'UTR 0.19 TCGA-W3-AA1V-06 2 116534824 116534824 G A DPP10 Missense_Mutation p.G425E 0.33 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 116599880 116599880 G A DPP10 Missense_Mutation p.E788K 0.19 tolerated(0.64) benign(0.09) TCGA-W3-AA1V-06 2 119739023 119739023 G A MARCO Missense_Mutation p.V269I 0.21 tolerated(0.44) probably_damaging(0.935) TCGA-W3-AA1V-06 2 119739969 119739969 G A MARCO Missense_Mutation p.G349E 0.19 deleterious(0) unknown(0) TCGA-W3-AA1V-06 2 120005455 120005455 C T STEAP3 Silent p.F241F 0.42 TCGA-W3-AA1V-06 2 120204407 120204407 G A SCTR Silent p.I356I 0.22 TCGA-W3-AA1V-06 2 120219445 120219445 C T SCTR Silent p.Q256Q 0.56 TCGA-W3-AA1V-06 2 120362560 120362560 G A PCDP1 Missense_Mutation p.E341K 0.25 deleterious(0.03) possibly_damaging(0.477) TCGA-W3-AA1V-06 2 120702753 120702753 A G PTPN4 Silent p.Q484Q 0.27 TCGA-W3-AA1V-06 2 120831735 120831735 C T EPB41L5 Missense_Mutation p.L130F 0.24 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 2 120836152 120836153 TT A EPB41L5 Frame_Shift_Del p.F266Lfs*6 0.09 TCGA-W3-AA1V-06 2 121708892 121708892 C T GLI2 Missense_Mutation p.P110S 0.19 tolerated(0.12) probably_damaging(0.998) TCGA-W3-AA1V-06 2 121732587 121732587 G A GLI2 Missense_Mutation p.D424N 0.28 deleterious(0.02) benign(0.033) TCGA-W3-AA1V-06 2 121746992 121746992 C A GLI2 Missense_Mutation p.Q1168K 0.30 tolerated(0.08) benign(0.054) TCGA-W3-AA1V-06 2 122120834 122120834 G A CLASP1 Silent p.L1374L 0.22 TCGA-W3-AA1V-06 2 122227526 122227526 G A CLASP1 Silent p.F241F 0.55 TCGA-W3-AA1V-06 2 1271217 1271217 C T SNTG2 Silent p.P386P 0.25 TCGA-W3-AA1V-06 2 127957024 127957024 G A CYP27C1 Silent p.F160F 0.51 TCGA-W3-AA1V-06 2 130858260 130858260 C T POTEF Missense_Mutation p.G411S 0.22 tolerated_low_confidence(0.3) possibly_damaging(0.9) TCGA-W3-AA1V-06 2 130877671 130877671 G A POTEF Silent p.L140L 0.53 TCGA-W3-AA1V-06 2 130877719 130877719 C T POTEF Missense_Mutation p.D124N 0.53 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-W3-AA1V-06 2 130900730 130900730 C T CCDC74B Intron 0.14 TCGA-W3-AA1V-06 2 131520510 131520510 C T AMER3 Nonsense_Mutation p.Q289* 0.30 TCGA-W3-AA1V-06 2 131890585 131890585 C T PLEKHB2 Silent p.L148L 0.21 TCGA-W3-AA1V-06 2 131890586 131890586 C T PLEKHB2 Nonsense_Mutation p.Q149* 0.17 TCGA-W3-AA1V-06 2 132021605 132021605 C T POTEE Silent p.V859V 0.20 TCGA-W3-AA1V-06 2 132021839 132021839 G A POTEE Silent p.E937E 0.12 TCGA-W3-AA1V-06 2 132290607 132290607 C T CCDC74A Silent p.F324F 0.47 TCGA-W3-AA1V-06 2 133538752 133538752 G A NCKAP5 Missense_Mutation p.S1641F 0.14 deleterious(0.03) benign(0.093) TCGA-W3-AA1V-06 2 135214333 135214333 A G TMEM163 Missense_Mutation p.M275T 0.34 deleterious_low_confidence(0.03) benign(0.097) TCGA-W3-AA1V-06 2 135745469 135745469 C T MAP3K19 Missense_Mutation p.E325K 0.26 tolerated(0.21) benign(0.051) TCGA-W3-AA1V-06 2 136481689 136481689 C T R3HDM1 Missense_Mutation p.R1043C 0.20 tolerated(0.07) benign(0.001) TCGA-W3-AA1V-06 2 136481891 136481891 G A R3HDM1 3'UTR 0.40 TCGA-W3-AA1V-06 2 136519404 136519404 C T UBXN4 Silent p.G175G 0.24 TCGA-W3-AA1V-06 2 136548366 136548366 G A LCT Silent p.L1733L 0.53 TCGA-W3-AA1V-06 2 136562541 136562541 G A LCT Silent p.A1420A 0.21 TCGA-W3-AA1V-06 2 136569941 136569941 G A LCT Missense_Mutation p.L765F 0.52 tolerated(0.33) benign(0.033) TCGA-W3-AA1V-06 2 136594503 136594503 G A LCT Silent p.L79L 0.35 TCGA-W3-AA1V-06 2 137814022 137814022 C T THSD7B Missense_Mutation p.P58S 0.23 tolerated(0.37) possibly_damaging(0.803) TCGA-W3-AA1V-06 2 137814169 137814169 G A THSD7B Missense_Mutation p.E107K 0.32 tolerated(0.16) possibly_damaging(0.504) TCGA-W3-AA1V-06 2 137814226 137814226 C T THSD7B Missense_Mutation p.P126S 0.44 tolerated(0.22) possibly_damaging(0.607) TCGA-W3-AA1V-06 2 137814542 137814542 C T THSD7B Missense_Mutation p.S231F 0.30 deleterious(0.05) probably_damaging(0.965) TCGA-W3-AA1V-06 2 137814561 137814561 G A THSD7B Silent p.E237E 0.30 TCGA-W3-AA1V-06 2 137814720 137814720 G A THSD7B Silent p.S290S 0.37 TCGA-W3-AA1V-06 2 137852549 137852549 C T THSD7B Missense_Mutation p.R353C 0.29 tolerated(0.18) probably_damaging(0.975) TCGA-W3-AA1V-06 2 137872722 137872722 G A THSD7B Missense_Mutation p.E410K 0.22 deleterious(0.03) possibly_damaging(0.838) TCGA-W3-AA1V-06 2 138413174 138413174 G A THSD7B Missense_Mutation p.G1353E 0.32 deleterious(0.05) unknown(0) TCGA-W3-AA1V-06 2 138413199 138413199 C T THSD7B Silent p.I1361I 0.21 TCGA-W3-AA1V-06 2 138421075 138421075 G A THSD7B Silent p.G1530G 0.38 TCGA-W3-AA1V-06 2 139310141 139310141 C T SPOPL Nonsense_Mutation p.R124* 0.17 TCGA-W3-AA1V-06 2 141122312 141122312 A T LRP1B Missense_Mutation p.N3683K 0.19 possibly_damaging(0.728) TCGA-W3-AA1V-06 2 141259351 141259351 C T LRP1B Missense_Mutation p.G2919S 0.27 probably_damaging(0.959) TCGA-W3-AA1V-06 2 141299408 141299408 G A LRP1B Missense_Mutation p.R2443C 0.31 possibly_damaging(0.689) TCGA-W3-AA1V-06 2 141597653 141597653 T A LRP1B Nonsense_Mutation p.K1706* 0.23 TCGA-W3-AA1V-06 2 141625323 141625323 G A LRP1B Missense_Mutation p.P1472L 0.50 benign(0.001) TCGA-W3-AA1V-06 2 141625798 141625798 G A LRP1B Missense_Mutation p.P1402S 0.21 benign(0.001) TCGA-W3-AA1V-06 2 141643732 141643732 G A LRP1B Silent p.Y1313Y 0.18 TCGA-W3-AA1V-06 2 141680548 141680548 G A LRP1B Missense_Mutation p.S1102F 0.26 probably_damaging(0.966) TCGA-W3-AA1V-06 2 141751657 141751657 G A LRP1B Missense_Mutation p.R851C 0.22 probably_damaging(0.978) TCGA-W3-AA1V-06 2 144903213 144903213 C T GTDC1 Silent p.E91E 0.27 TCGA-W3-AA1V-06 2 145156164 145156164 A T ZEB2 Missense_Mutation p.F864I 0.20 tolerated(0.32) benign(0.015) TCGA-W3-AA1V-06 2 145156680 145156680 A T ZEB2 Missense_Mutation p.F692I 0.29 deleterious(0.03) possibly_damaging(0.702) TCGA-W3-AA1V-06 2 148680644 148680644 C T ACVR2A Silent p.L394L 0.54 TCGA-W3-AA1V-06 2 149226903 149226903 C T MBD5 Missense_Mutation p.S464F 0.52 deleterious(0) possibly_damaging(0.683) TCGA-W3-AA1V-06 2 149247341 149247341 G A MBD5 Silent p.R1147R 0.17 TCGA-W3-AA1V-06 2 152293348 152293348 C T RIF1 Silent p.S401S 0.13 TCGA-W3-AA1V-06 2 152374871 152374871 C T NEB Silent p.E7587E 0.21 TCGA-W3-AA1V-06 2 152404198 152404198 C T NEB Missense_Mutation p.D6738N 0.17 probably_damaging(1) TCGA-W3-AA1V-06 2 152467071 152467071 A T NEB Missense_Mutation p.S3993T 0.27 benign(0.438) TCGA-W3-AA1V-06 2 152484149 152484149 C T NEB Missense_Mutation p.C3344Y 0.24 probably_damaging(0.993) TCGA-W3-AA1V-06 2 152484288 152484288 C A NEB Nonsense_Mutation p.E3298* 0.25 TCGA-W3-AA1V-06 2 152521992 152521992 G A NEB Missense_Mutation p.S1698F 0.23 probably_damaging(0.999) TCGA-W3-AA1V-06 2 152527700 152527700 C T NEB Missense_Mutation p.G1448E 0.72 probably_damaging(1) TCGA-W3-AA1V-06 2 152584271 152584271 C T NEB Silent p.V76V 0.30 TCGA-W3-AA1V-06 2 153004793 153004793 G A STAM2 Silent p.A49A 0.59 TCGA-W3-AA1V-06 2 153006680 153006680 T A STAM2 Missense_Mutation p.K35I 0.20 deleterious(0) probably_damaging(0.947) TCGA-W3-AA1V-06 2 153475640 153475640 C T FMNL2 Missense_Mutation p.P532L 0.18 probably_damaging(0.991) TCGA-W3-AA1V-06 2 153482014 153482014 C T FMNL2 Silent p.L634L 0.36 TCGA-W3-AA1V-06 2 1544418 1544418 A C TPO Missense_Mutation p.T891P 0.24 tolerated_low_confidence(0.2) benign(0.001) TCGA-W3-AA1V-06 2 155099378 155099378 G A GALNT13 Missense_Mutation p.G216R 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 2 155102325 155102325 G A GALNT13 Silent p.R229R 0.24 TCGA-W3-AA1V-06 2 15523398 15523398 C T NBAS Missense_Mutation p.D1101N 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 2 15607790 15607790 G A NBAS Silent p.S672S 0.25 TCGA-W3-AA1V-06 2 158157267 158157267 C T GALNT5 Missense_Mutation p.S732F 0.21 deleterious(0) possibly_damaging(0.897) TCGA-W3-AA1V-06 2 159170313 159170313 C T CCDC148 Silent p.L286L 0.53 TCGA-W3-AA1V-06 2 159519539 159519539 C T PKP4 Missense_Mutation p.S781F 0.22 deleterious(0.01) benign(0.089) TCGA-W3-AA1V-06 2 160671981 160671981 C T LY75-CD302 Missense_Mutation p.G1495E 0.27 tolerated(0.07) benign(0.333) TCGA-W3-AA1V-06 2 160676395 160676395 G A LY75-CD302 Missense_Mutation p.S1332L 0.20 deleterious(0.02) probably_damaging(0.943) TCGA-W3-AA1V-06 2 160833218 160833218 C T PLA2R1 Silent p.K805K 0.33 TCGA-W3-AA1V-06 2 163360985 163360985 G A KCNH7 Nonsense_Mutation p.R366* 0.19 TCGA-W3-AA1V-06 2 163374667 163374667 C T KCNH7 Silent p.R155R 0.16 TCGA-W3-AA1V-06 2 1652303 1652303 C T PXDN Silent p.R1083R 0.47 TCGA-W3-AA1V-06 2 1653186 1653186 C T PXDN Missense_Mutation p.G789E 0.23 tolerated(0.07) possibly_damaging(0.461) TCGA-W3-AA1V-06 2 1653187 1653187 C T PXDN Missense_Mutation p.G789R 0.22 tolerated(0.17) benign(0.243) TCGA-W3-AA1V-06 2 165365320 165365320 C T GRB14 Missense_Mutation p.D287N 0.17 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 2 165765237 165765237 G A SLC38A11 Silent p.F280F 0.40 TCGA-W3-AA1V-06 2 165947389 165947389 G A SCN3A Silent p.S1758S 0.29 TCGA-W3-AA1V-06 2 165970416 165970416 C T SCN3A Nonsense_Mutation p.W1193* 0.19 TCGA-W3-AA1V-06 2 165986449 165986449 C T SCN3A Splice_Site p.X974_splice 0.24 TCGA-W3-AA1V-06 2 166152541 166152541 C T SCN2A Missense_Mutation p.P70S 0.29 deleterious(0.04) benign(0.249) TCGA-W3-AA1V-06 2 166166843 166166843 C T SCN2A Silent p.T236T 0.46 TCGA-W3-AA1V-06 2 166167041 166167041 G A SCN2A Silent p.G302G 0.28 TCGA-W3-AA1V-06 2 166536027 166536027 G A CSRNP3 Missense_Mutation p.E508K 0.22 deleterious_low_confidence(0.03) benign(0.24) TCGA-W3-AA1V-06 2 166848117 166848117 C T SCN1A Missense_Mutation p.E1890K 0.19 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 166866235 166866235 C T SCN1A Silent p.G1332G 0.27 TCGA-W3-AA1V-06 2 166868748 166868748 C T SCN1A Silent p.T1250T 0.25 TCGA-W3-AA1V-06 2 166894589 166894589 C T SCN1A Silent p.K881K 0.24 TCGA-W3-AA1V-06 2 167089905 167089905 C T SCN9A Missense_Mutation p.R1279Q 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 2 167129104 167129104 G A SCN9A Silent p.F1041F 0.20 TCGA-W3-AA1V-06 2 167129267 167129267 C T SCN9A Missense_Mutation p.G987E 0.17 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 167133774 167133774 C T SCN9A Missense_Mutation p.A854T 0.27 deleterious(0.03) possibly_damaging(0.73) TCGA-W3-AA1V-06 2 167262185 167262185 G A SCN7A Missense_Mutation p.H1652Y 0.56 tolerated(0.83) benign(0.167) TCGA-W3-AA1V-06 2 167298065 167298065 G A SCN7A Silent p.L666L 0.14 TCGA-W3-AA1V-06 2 167301362 167301362 G A SCN7A Silent p.I512I 0.41 TCGA-W3-AA1V-06 2 16769357 16769357 C T FAM49A Missense_Mutation p.E11K 0.24 tolerated(0.06) benign(0.003) TCGA-W3-AA1V-06 2 168097200 168097200 G A XIRP2 Silent p.E332E 0.61 TCGA-W3-AA1V-06 2 168101011 168101011 C T XIRP2 Nonsense_Mutation p.Q1037* 0.13 TCGA-W3-AA1V-06 2 168102838 168102838 G A XIRP2 Missense_Mutation p.E1646K 0.28 probably_damaging(0.982) TCGA-W3-AA1V-06 2 168103550 168103550 A T XIRP2 Missense_Mutation p.K1883I 0.73 benign(0.132) TCGA-W3-AA1V-06 2 168105224 168105224 C T XIRP2 Missense_Mutation p.S2441F 0.19 benign(0.052) TCGA-W3-AA1V-06 2 168105565 168105565 A G XIRP2 Missense_Mutation p.K2555E 0.32 benign(0.234) TCGA-W3-AA1V-06 2 168105873 168105873 G A XIRP2 Silent p.K2657K 0.25 TCGA-W3-AA1V-06 2 168106372 168106372 G A XIRP2 Missense_Mutation p.G2824R 0.30 benign(0.046) TCGA-W3-AA1V-06 2 168108385 168108385 G A XIRP2 Missense_Mutation p.G3495R 0.24 probably_damaging(1) TCGA-W3-AA1V-06 2 168114441 168114441 G A XIRP2 3'UTR 0.23 TCGA-W3-AA1V-06 2 168726617 168726617 G A B3GALT1 3'UTR 0.64 TCGA-W3-AA1V-06 2 169547592 169547592 C T CERS6 Nonsense_Mutation p.Q172* 0.20 TCGA-W3-AA1V-06 2 169626191 169626191 C T CERS6 3'UTR 0.16 TCGA-W3-AA1V-06 2 169764375 169764375 G A G6PC2 Missense_Mutation p.G285E 0.25 tolerated(0.24) benign(0) TCGA-W3-AA1V-06 2 169869977 169869977 C T ABCB11 Missense_Mutation p.G65E 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 170063145 170063145 C T LRP2 Missense_Mutation p.G2362E 0.56 benign(0.005) TCGA-W3-AA1V-06 2 170092384 170092384 C T LRP2 Missense_Mutation p.G1629E 0.55 probably_damaging(1) TCGA-W3-AA1V-06 2 170094687 170094687 C T LRP2 Missense_Mutation p.D1474N 0.30 probably_damaging(1) TCGA-W3-AA1V-06 2 170361406 170361406 C T BBS5 3'UTR 0.31 TCGA-W3-AA1V-06 2 170417038 170417038 A T FASTKD1 Missense_Mutation p.F277Y 0.29 tolerated(0.2) benign(0.081) TCGA-W3-AA1V-06 2 171238617 171238617 G A MYO3B Missense_Mutation p.D355N 0.42 tolerated(0.09) benign(0.11) TCGA-W3-AA1V-06 2 171260898 171260898 C T MYO3B Nonsense_Mutation p.Q807* 0.15 TCGA-W3-AA1V-06 2 171262102 171262102 G A MYO3B Missense_Mutation p.G827R 0.36 tolerated(0.69) benign(0.02) TCGA-W3-AA1V-06 2 171264298 171264298 G A MYO3B Missense_Mutation p.R865K 0.22 deleterious(0.05) possibly_damaging(0.449) TCGA-W3-AA1V-06 2 172644160 172644160 G A SLC25A12 Nonsense_Mutation p.R586* 0.59 TCGA-W3-AA1V-06 2 172803272 172803272 C T HAT1 Missense_Mutation p.P53S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 172965495 172965495 G A DLX2 Missense_Mutation p.P255S 0.46 tolerated(0.28) benign(0) TCGA-W3-AA1V-06 2 173362722 173362722 C T ITGA6 Missense_Mutation p.P1003L 0.27 tolerated(0.28) possibly_damaging(0.584) TCGA-W3-AA1V-06 2 175243704 175243704 G A CIR1 Missense_Mutation p.P144L 0.49 deleterious(0) unknown(0) TCGA-W3-AA1V-06 2 175613451 175613451 C T CHRNA1 Missense_Mutation p.D392N 0.20 tolerated(0.15) probably_damaging(0.967) TCGA-W3-AA1V-06 2 176044903 176044903 G A ATP5G3 Nonsense_Mutation p.R15* 0.17 TCGA-W3-AA1V-06 2 176044904 176044904 G A ATP5G3 Silent p.I14I 0.17 TCGA-W3-AA1V-06 2 176948335 176948335 G A EVX2 Missense_Mutation p.P57L 0.23 deleterious(0) benign(0.021) TCGA-W3-AA1V-06 2 176959545 176959545 C T HOXD13 3'UTR 0.36 TCGA-W3-AA1V-06 2 176965022 176965022 G A HOXD12 Missense_Mutation p.D165N 0.25 tolerated(0.26) benign(0.322) TCGA-W3-AA1V-06 2 176965374 176965374 G T HOXD12 Missense_Mutation p.K233N 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 17698582 17698582 G A RAD51AP2 Silent p.F367F 0.13 TCGA-W3-AA1V-06 2 17698715 17698715 A T RAD51AP2 Missense_Mutation p.F323Y 0.51 deleterious(0.04) possibly_damaging(0.848) TCGA-W3-AA1V-06 2 177017569 177017569 T A HOXD4 Missense_Mutation p.S223T 0.22 tolerated(0.19) possibly_damaging(0.827) TCGA-W3-AA1V-06 2 178301719 178301719 C T AGPS Missense_Mutation p.H192Y 0.16 tolerated(0.06) benign(0.003) TCGA-W3-AA1V-06 2 178936691 178936691 G A PDE11A Silent p.L158L 0.26 TCGA-W3-AA1V-06 2 179257251 179257251 C T OSBPL6 Silent p.F878F 0.47 TCGA-W3-AA1V-06 2 179318314 179318314 G A DFNB59 Missense_Mutation p.D60N 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 179395202 179395202 C T TTN Silent p.K35380K 0.22 TCGA-W3-AA1V-06 2 179395519 179395519 C T TTN Missense_Mutation p.E35275K 0.52 TCGA-W3-AA1V-06 2 179396707 179396707 G A TTN Missense_Mutation p.P34879S 0.27 TCGA-W3-AA1V-06 2 179408185 179408185 C T TTN Missense_Mutation p.G32172E 0.11 TCGA-W3-AA1V-06 2 179408186 179408186 C T TTN Missense_Mutation p.G32172R 0.11 TCGA-W3-AA1V-06 2 179408253 179408253 C T TTN Missense_Mutation p.M32149I 0.23 TCGA-W3-AA1V-06 2 179408946 179408946 C T TTN Missense_Mutation p.E32004K 0.57 TCGA-W3-AA1V-06 2 179425756 179425756 A G TTN Missense_Mutation p.V28368A 0.18 TCGA-W3-AA1V-06 2 179427302 179427302 C T TTN Missense_Mutation p.E27853K 0.21 TCGA-W3-AA1V-06 2 179429748 179429748 C T TTN Silent p.L27037L 0.51 TCGA-W3-AA1V-06 2 179438375 179438375 T C TTN Missense_Mutation p.K24162E 0.26 TCGA-W3-AA1V-06 2 179440475 179440475 C T TTN Missense_Mutation p.D23462N 0.29 TCGA-W3-AA1V-06 2 179444691 179444691 T G TTN Missense_Mutation p.E22441D 0.45 TCGA-W3-AA1V-06 2 179449576 179449576 C T TTN Missense_Mutation p.E21598K 0.52 TCGA-W3-AA1V-06 2 179451515 179451515 C T TTN Silent p.R21371R 0.33 TCGA-W3-AA1V-06 2 179458202 179458202 C T TTN Missense_Mutation p.R19578K 0.17 TCGA-W3-AA1V-06 2 179485565 179485565 T A TTN Nonsense_Mutation p.K15258* 0.27 TCGA-W3-AA1V-06 2 179496902 179496902 C T TTN Missense_Mutation p.M14573I 0.60 TCGA-W3-AA1V-06 2 179558399 179558399 C T TTN Missense_Mutation p.E10511K 0.37 TCGA-W3-AA1V-06 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.52 TCGA-W3-AA1V-06 2 179575527 179575527 C T TTN Missense_Mutation p.D9433N 0.31 TCGA-W3-AA1V-06 2 179575549 179575549 C T TTN Silent p.P9425P 0.48 TCGA-W3-AA1V-06 2 179579788 179579788 C T TTN Missense_Mutation p.D8709N 0.31 TCGA-W3-AA1V-06 2 179584106 179584106 A C TTN Missense_Mutation p.L8004W 0.26 TCGA-W3-AA1V-06 2 179584951 179584951 G A TTN Silent p.T7806T 0.16 TCGA-W3-AA1V-06 2 179585377 179585377 G A TTN Silent p.F7704F 0.12 TCGA-W3-AA1V-06 2 179587804 179587804 C T TTN Silent p.R7310R 0.52 TCGA-W3-AA1V-06 2 179590164 179590164 C T TTN Missense_Mutation p.G6923R 0.52 TCGA-W3-AA1V-06 2 179594213 179594213 C T TTN Missense_Mutation p.G6224R 0.41 TCGA-W3-AA1V-06 2 179594940 179594940 C T TTN Missense_Mutation p.D6063N 0.46 TCGA-W3-AA1V-06 2 179595082 179595082 C T TTN Silent p.V6015V 0.77 TCGA-W3-AA1V-06 2 179595335 179595335 G A TTN Silent p.F5975F 0.14 TCGA-W3-AA1V-06 2 179595385 179595385 T A TTN Missense_Mutation p.I5959L 0.22 TCGA-W3-AA1V-06 2 179597369 179597369 G A TTN Silent p.F5473F 0.29 TCGA-W3-AA1V-06 2 179598481 179598481 C T TTN Missense_Mutation p.G5212E 0.17 TCGA-W3-AA1V-06 2 179605412 179605412 T G TTN Missense_Mutation p.K4183T 0.27 TCGA-W3-AA1V-06 2 179610609 179610609 T A TTN Intron 0.47 TCGA-W3-AA1V-06 2 179611448 179611448 C T TTN Intron 0.31 TCGA-W3-AA1V-06 2 179611923 179611923 C T TTN Intron 0.39 TCGA-W3-AA1V-06 2 179613948 179613948 T A TTN Intron 0.38 TCGA-W3-AA1V-06 2 179614072 179614072 G A TTN Intron 0.49 TCGA-W3-AA1V-06 2 179614349 179614349 C T TTN Intron 0.21 TCGA-W3-AA1V-06 2 179615320 179615320 C T TTN Intron 0.17 TCGA-W3-AA1V-06 2 179615354 179615354 C T TTN Intron 0.60 TCGA-W3-AA1V-06 2 179615721 179615721 G A TTN Intron 0.52 TCGA-W3-AA1V-06 2 179616371 179616371 C T TTN Intron 0.48 TCGA-W3-AA1V-06 2 179640347 179640347 C T TTN Missense_Mutation p.E2082K 0.30 TCGA-W3-AA1V-06 2 179640831 179640831 C T TTN Silent p.V1920V 0.57 TCGA-W3-AA1V-06 2 179644017 179644017 C T TTN Missense_Mutation p.R1301K 0.25 TCGA-W3-AA1V-06 2 179644173 179644173 G A TTN Missense_Mutation p.S1249F 0.19 TCGA-W3-AA1V-06 2 179647731 179647731 C T TTN Missense_Mutation p.G968R 0.26 TCGA-W3-AA1V-06 2 179659728 179659728 C T TTN Missense_Mutation p.S389N 0.50 TCGA-W3-AA1V-06 2 179702333 179702333 C T CCDC141 Missense_Mutation p.E1205K 0.33 deleterious(0) probably_damaging(0.925) TCGA-W3-AA1V-06 2 179714872 179714872 C T CCDC141 Silent p.Q1087Q 0.43 TCGA-W3-AA1V-06 2 179733999 179733999 C T CCDC141 Missense_Mutation p.E747K 0.47 tolerated(0.09) benign(0.02) TCGA-W3-AA1V-06 2 18113206 18113206 C T KCNS3 Missense_Mutation p.R311W 0.33 tolerated(0.13) benign(0.14) TCGA-W3-AA1V-06 2 182339940 182339940 C T ITGA4 Missense_Mutation p.P161S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 182374461 182374461 G A ITGA4 Missense_Mutation p.R591Q 0.26 tolerated(0.17) benign(0.099) TCGA-W3-AA1V-06 2 182389987 182389987 T C ITGA4 Silent p.L770L 0.32 TCGA-W3-AA1V-06 2 182438500 182438500 C T CERKL Missense_Mutation p.G198E 0.20 tolerated(0.1) benign(0.068) TCGA-W3-AA1V-06 2 182543440 182543440 C T NEUROD1 Missense_Mutation p.E50K 0.18 tolerated(0.68) benign(0.074) TCGA-W3-AA1V-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.18 deleterious(0) probably_damaging(0.961) TCGA-W3-AA1V-06 2 183799553 183799553 G A NCKAP1 Missense_Mutation p.S935F 0.30 deleterious(0.04) probably_damaging(0.976) TCGA-W3-AA1V-06 2 183951863 183951863 C T DUSP19 Silent p.T123T 0.31 TCGA-W3-AA1V-06 2 185801717 185801717 C T ZNF804A Missense_Mutation p.L532F 0.33 tolerated(0.13) benign(0.001) TCGA-W3-AA1V-06 2 186670552 186670552 A G FSIP2 Missense_Mutation p.T5596A 0.22 benign(0.001) TCGA-W3-AA1V-06 2 186673811 186673811 G A FSIP2 Missense_Mutation p.R6682K 0.20 probably_damaging(0.986) TCGA-W3-AA1V-06 2 187370494 187370494 C T ZC3H15 Missense_Mutation p.R298C 0.44 deleterious(0.03) benign(0.015) TCGA-W3-AA1V-06 2 187498071 187498071 C T ITGAV Missense_Mutation p.L201F 0.33 deleterious(0) benign(0.352) TCGA-W3-AA1V-06 2 187611974 187611974 C T FAM171B Missense_Mutation p.P241S 0.19 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 2 187626643 187626643 C T FAM171B Missense_Mutation p.S525F 0.19 tolerated(0.63) possibly_damaging(0.847) TCGA-W3-AA1V-06 2 18765360 18765360 G A NT5C1B Silent p.F355F 0.25 TCGA-W3-AA1V-06 2 187693510 187693510 C T ZSWIM2 Missense_Mutation p.R368K 0.21 tolerated(0.19) probably_damaging(0.985) TCGA-W3-AA1V-06 2 18770795 18770795 C T NT5C1B 5'UTR 0.25 TCGA-W3-AA1V-06 2 188216892 188216892 C T CALCRL Silent p.K359K 0.53 TCGA-W3-AA1V-06 2 188216927 188216927 C T CALCRL Missense_Mutation p.E348K 0.28 deleterious(0) benign(0.158) TCGA-W3-AA1V-06 2 188228105 188228105 G A CALCRL Missense_Mutation p.P209S 0.37 tolerated(0.16) benign(0.444) TCGA-W3-AA1V-06 2 188250328 188250328 A G CALCRL 5'UTR 0.29 TCGA-W3-AA1V-06 2 189861930 189861930 G A COL3A1 Missense_Mutation p.G601R 0.33 unknown(0) TCGA-W3-AA1V-06 2 189864239 189864239 C T COL3A1 Missense_Mutation p.P722L 0.28 unknown(0) TCGA-W3-AA1V-06 2 189898822 189898822 C T COL5A2 Missense_Mutation p.E1492K 0.60 unknown(0) TCGA-W3-AA1V-06 2 190556980 190556980 G A ANKAR Splice_Site p.X347_splice 0.26 TCGA-W3-AA1V-06 2 191903962 191903962 G A STAT4 Missense_Mutation p.S466F 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 192011460 192011460 G A STAT4 Missense_Mutation p.T51I 0.26 deleterious(0) benign(0.025) TCGA-W3-AA1V-06 2 1926536 1926536 G A MYT1L Silent p.F335F 0.16 TCGA-W3-AA1V-06 2 1926755 1926755 C T MYT1L Silent p.V262V 0.20 TCGA-W3-AA1V-06 2 192701013 192701013 C T SDPR Missense_Mutation p.G305E 0.23 deleterious(0.01) benign(0.191) TCGA-W3-AA1V-06 2 192711321 192711321 C T SDPR Missense_Mutation p.V111M 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 192863875 192863875 C T TMEFF2 Missense_Mutation p.G199E 0.21 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1V-06 2 19553094 19553094 G A OSR1 Missense_Mutation p.P158L 0.21 deleterious(0.03) benign(0.04) TCGA-W3-AA1V-06 2 196642567 196642567 T A DNAH7 Missense_Mutation p.K3674M 0.54 tolerated(0.25) benign(0.039) TCGA-W3-AA1V-06 2 196661419 196661419 C A DNAH7 Missense_Mutation p.G3466C 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 196674525 196674525 C T DNAH7 Missense_Mutation p.D3278N 0.18 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 2 196681368 196681368 C T DNAH7 Missense_Mutation p.E3249K 0.50 tolerated(0.6) benign(0.051) TCGA-W3-AA1V-06 2 196729076 196729076 C T DNAH7 Missense_Mutation p.D2435N 0.60 deleterious(0.01) benign(0.021) TCGA-W3-AA1V-06 2 196737096 196737096 G A DNAH7 Missense_Mutation p.P2171S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 196738409 196738409 C T DNAH7 Missense_Mutation p.R2099Q 0.64 deleterious(0.01) probably_damaging(0.976) TCGA-W3-AA1V-06 2 196801391 196801391 G A DNAH7 Silent p.F1068F 0.46 TCGA-W3-AA1V-06 2 196825228 196825228 G A DNAH7 Missense_Mutation p.P883S 0.22 tolerated(0.2) benign(0.026) TCGA-W3-AA1V-06 2 196851904 196851904 C T DNAH7 Missense_Mutation p.G547E 0.28 tolerated(0.15) possibly_damaging(0.589) TCGA-W3-AA1V-06 2 196892734 196892734 C T DNAH7 Missense_Mutation p.G146R 0.26 tolerated(0.5) benign(0.001) TCGA-W3-AA1V-06 2 197511098 197511098 C T CCDC150 Missense_Mutation p.L16F 0.22 deleterious(0) possibly_damaging(0.65) TCGA-W3-AA1V-06 2 197863717 197863717 C T ANKRD44 Missense_Mutation p.R835K 0.28 tolerated(0.28) benign(0.046) TCGA-W3-AA1V-06 2 197986143 197986143 G A ANKRD44 Silent p.F273F 0.24 TCGA-W3-AA1V-06 2 198363475 198363475 C T HSPD1 Missense_Mutation p.G33D 0.13 deleterious(0.02) possibly_damaging(0.528) TCGA-W3-AA1V-06 2 198508935 198508935 G A RFTN2 Missense_Mutation p.P129S 0.25 tolerated(0.26) possibly_damaging(0.577) TCGA-W3-AA1V-06 2 198950035 198950035 G T PLCL1 Missense_Mutation p.R598S 0.32 tolerated(0.52) benign(0.232) TCGA-W3-AA1V-06 2 198950348 198950348 G A PLCL1 Missense_Mutation p.E703K 0.21 tolerated(0.11) possibly_damaging(0.517) TCGA-W3-AA1V-06 2 198950762 198950762 C T PLCL1 Missense_Mutation p.L841F 0.31 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 2 201527643 201527643 G A AOX1 Missense_Mutation p.G1165E 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 201994606 201994606 C T CFLAR Silent p.I6I 0.53 TCGA-W3-AA1V-06 2 202003424 202003424 C A CFLAR Intron 0.27 TCGA-W3-AA1V-06 2 202070637 202070637 G A CASP10 Missense_Mutation p.V252I 0.15 tolerated(0.42) benign(0.017) TCGA-W3-AA1V-06 2 202073936 202073936 C T CASP10 Silent p.L356L 0.33 TCGA-W3-AA1V-06 2 202343240 202343240 G A STRADB Missense_Mutation p.R329Q 0.13 tolerated(0.19) probably_damaging(0.924) TCGA-W3-AA1V-06 2 202352539 202352539 T A ALS2CR11 Silent p.G1753G 0.40 TCGA-W3-AA1V-06 2 202352540 202352540 C A ALS2CR11 Missense_Mutation p.G1753V 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 2 202352541 202352541 C T ALS2CR11 Missense_Mutation p.G1753R 0.40 tolerated(0.11) probably_damaging(0.921) TCGA-W3-AA1V-06 2 202550737 202550737 C T MPP4 Missense_Mutation p.D133N 0.26 tolerated(0.4) benign(0.02) TCGA-W3-AA1V-06 2 203624029 203624029 G A FAM117B Silent p.R468R 0.26 TCGA-W3-AA1V-06 2 204143391 204143391 G A CYP20A1 Missense_Mutation p.G259R 0.30 deleterious(0.01) benign(0.078) TCGA-W3-AA1V-06 2 204571368 204571368 C T CD28 5'UTR 0.22 TCGA-W3-AA1V-06 2 206110510 206110510 G A PARD3B Missense_Mutation p.E655K 0.43 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 2 206480298 206480298 C T PARD3B Missense_Mutation p.P1065S 0.23 tolerated(0.32) benign(0.002) TCGA-W3-AA1V-06 2 207171208 207171208 G A ZDBF2 Silent p.K652K 0.29 TCGA-W3-AA1V-06 2 207171914 207171914 G A ZDBF2 Missense_Mutation p.E888K 0.18 tolerated(0.11) possibly_damaging(0.692) TCGA-W3-AA1V-06 2 207172439 207172439 G A ZDBF2 Missense_Mutation p.E1063K 0.26 tolerated(0.16) possibly_damaging(0.678) TCGA-W3-AA1V-06 2 207172714 207172714 A T ZDBF2 Missense_Mutation p.Q1154H 0.35 deleterious(0) benign(0.216) TCGA-W3-AA1V-06 2 207457421 207457421 C T ADAM23 Missense_Mutation p.P680L 0.22 deleterious(0.04) benign(0.211) TCGA-W3-AA1V-06 2 207605797 207605797 T A MDH1B Missense_Mutation p.K480N 0.29 deleterious_low_confidence(0.02) benign(0.003) TCGA-W3-AA1V-06 2 207625638 207625638 G A MDH1B Missense_Mutation p.P41L 0.21 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 2 207824442 207824442 G A CPO Missense_Mutation p.G154S 0.29 deleterious(0.05) probably_damaging(0.975) TCGA-W3-AA1V-06 2 207824443 207824443 G A CPO Missense_Mutation p.G154D 0.28 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 207833946 207833946 C T CPO Missense_Mutation p.P304L 0.27 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 2 208440037 208440037 G A CREB1 Missense_Mutation p.G197S 0.53 tolerated(0.13) probably_damaging(0.929) TCGA-W3-AA1V-06 2 208866251 208866251 C T PLEKHM3 Missense_Mutation p.G38E 0.25 deleterious(0.01) benign(0.305) TCGA-W3-AA1V-06 2 208994197 208994197 C T CRYGC Missense_Mutation p.D74N 0.31 tolerated(0.06) benign(0.083) TCGA-W3-AA1V-06 2 209116179 209116179 G A IDH1 Missense_Mutation p.P33S 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-W3-AA1V-06 2 209308249 209308249 A T PTH2R Missense_Mutation p.D229V 0.27 deleterious(0.02) probably_damaging(0.948) TCGA-W3-AA1V-06 2 210642202 210642202 C T UNC80 Silent p.N173N 0.20 TCGA-W3-AA1V-06 2 211456626 211456626 C T CPS1 Missense_Mutation p.A346V 0.37 deleterious(0.02) benign(0.031) TCGA-W3-AA1V-06 2 212252718 212252718 C T ERBB4 Splice_Site p.X1046_splice 0.23 TCGA-W3-AA1V-06 2 21230885 21230885 C T APOB Missense_Mutation p.G2952E 0.56 benign(0.028) TCGA-W3-AA1V-06 2 21231406 21231406 C T APOB Silent p.G2778G 0.25 TCGA-W3-AA1V-06 2 21233906 21233906 T G APOB Missense_Mutation p.D1945A 0.44 probably_damaging(0.996) TCGA-W3-AA1V-06 2 212615382 212615382 C T ERBB4 Missense_Mutation p.E202K 0.29 tolerated(0.64) benign(0.006) TCGA-W3-AA1V-06 2 212652853 212652853 C T ERBB4 Silent p.Q151Q 0.34 TCGA-W3-AA1V-06 2 212652865 212652865 G T ERBB4 Silent p.V147V 0.27 TCGA-W3-AA1V-06 2 213872554 213872554 C T IKZF2 Missense_Mutation p.E371K 0.44 tolerated(0.09) probably_damaging(0.991) TCGA-W3-AA1V-06 2 214215342 214215342 C T SPAG16 Silent p.S245S 0.19 TCGA-W3-AA1V-06 2 215813432 215813432 G A ABCA12 Missense_Mutation p.S2331L 0.16 tolerated(0.08) possibly_damaging(0.79) TCGA-W3-AA1V-06 2 215865605 215865605 C T ABCA12 Silent p.K1001K 0.47 TCGA-W3-AA1V-06 2 215868975 215868975 C T ABCA12 Missense_Mutation p.G881R 0.18 deleterious(0.03) benign(0.389) TCGA-W3-AA1V-06 2 215928923 215928923 G A ABCA12 Silent p.N61N 0.21 TCGA-W3-AA1V-06 2 216273143 216273143 G A FN1 Missense_Mutation p.P769L 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 216903971 216903971 G A PECR 3'UTR 0.25 TCGA-W3-AA1V-06 2 217012877 217012877 G A XRCC5 Silent p.L516L 0.22 TCGA-W3-AA1V-06 2 217124323 217124323 C T MARCH4 Silent p.L315L 0.25 TCGA-W3-AA1V-06 2 218678443 218678443 G A TNS1 Missense_Mutation p.S1505L 0.20 deleterious(0) possibly_damaging(0.769) TCGA-W3-AA1V-06 2 218749870 218749870 C T TNS1 Silent p.K253K 0.74 TCGA-W3-AA1V-06 2 218940463 218940463 G A RUFY4 Silent p.K436K 0.23 TCGA-W3-AA1V-06 2 219029522 219029522 G A CXCR1 Missense_Mutation p.A138V 0.40 tolerated(0.09) possibly_damaging(0.764) TCGA-W3-AA1V-06 2 219029535 219029535 C T CXCR1 Missense_Mutation p.D134N 0.16 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 2 219104125 219104125 C T ARPC2 Missense_Mutation p.S156F 0.62 deleterious(0) possibly_damaging(0.49) TCGA-W3-AA1V-06 2 219300090 219300090 G A VIL1 Missense_Mutation p.E587K 0.62 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 2 219508223 219508223 G A ZNF142 Missense_Mutation p.P1006S 0.58 tolerated(0.14) possibly_damaging(0.641) TCGA-W3-AA1V-06 2 219508970 219508970 G A ZNF142 Missense_Mutation p.L757F 0.44 tolerated(0.37) benign(0.01) TCGA-W3-AA1V-06 2 219508971 219508971 G A ZNF142 Silent p.P756P 0.44 TCGA-W3-AA1V-06 2 219563972 219563972 G A STK36 Silent p.Q1235Q 0.26 TCGA-W3-AA1V-06 2 219564069 219564069 C T STK36 Nonsense_Mutation p.Q1268* 0.29 TCGA-W3-AA1V-06 2 219679129 219679129 C T CYP27A1 Missense_Mutation p.S404F 0.53 deleterious(0) possibly_damaging(0.781) TCGA-W3-AA1V-06 2 219738463 219738463 G A WNT6 Missense_Mutation p.E332K 0.33 tolerated(0.41) benign(0.079) TCGA-W3-AA1V-06 2 219856941 219856941 G A CRYBA2 Silent p.D62D 0.20 TCGA-W3-AA1V-06 2 219870810 219870810 G C CCDC108 Missense_Mutation p.R1619G 0.18 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 2 219873832 219873832 C T CCDC108 Silent p.Q1537Q 0.29 TCGA-W3-AA1V-06 2 220028137 220028137 G A SLC23A3 Missense_Mutation p.R480W 0.49 deleterious(0.03) benign(0.056) TCGA-W3-AA1V-06 2 220047159 220047159 C T FAM134A Silent p.A480A 0.34 TCGA-W3-AA1V-06 2 220047160 220047160 C T FAM134A Missense_Mutation p.P481S 0.33 tolerated(0.15) probably_damaging(0.998) TCGA-W3-AA1V-06 2 220075817 220075817 G A ABCB6 Missense_Mutation p.S661F 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 220103820 220103820 G A GLB1L Silent p.I352I 0.53 TCGA-W3-AA1V-06 2 220246062 220246062 G A DNPEP Silent p.L412L 0.47 TCGA-W3-AA1V-06 2 220331961 220331961 G A SPEG Missense_Mutation p.E983K 0.30 possibly_damaging(0.734) TCGA-W3-AA1V-06 2 220331962 220331962 A T SPEG Missense_Mutation p.E983V 0.31 probably_damaging(0.949) TCGA-W3-AA1V-06 2 220379517 220379517 G A ASIC4 Missense_Mutation p.G151E 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 220396790 220396790 C T ASIC4 Silent p.H392H 0.61 TCGA-W3-AA1V-06 2 220399984 220399984 C T ASIC4 Silent p.I497I 0.33 TCGA-W3-AA1V-06 2 220402019 220402019 G A ASIC4 Silent p.L567L 0.24 TCGA-W3-AA1V-06 2 220420645 220420645 G A OBSL1 Intron 0.22 TCGA-W3-AA1V-06 2 220431686 220431686 G A OBSL1 Missense_Mutation p.A667V 0.21 tolerated(0.1) benign(0.005) TCGA-W3-AA1V-06 2 220467233 220467233 C T STK11IP Missense_Mutation p.P172L 0.51 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 222298895 222298895 C T EPHA4 Silent p.G821G 0.56 TCGA-W3-AA1V-06 2 223554123 223554123 C T MOGAT1 Missense_Mutation p.S138L 0.41 deleterious(0.01) benign(0.006) TCGA-W3-AA1V-06 2 223797886 223797886 C T ACSL3 Missense_Mutation p.R579C 0.52 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1V-06 2 225378245 225378245 A G CUL3 Missense_Mutation p.F217S 0.15 deleterious(0) possibly_damaging(0.756) TCGA-W3-AA1V-06 2 225719694 225719694 G A DOCK10 Missense_Mutation p.P625L 0.53 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 227659788 227659788 T C IRS1 Missense_Mutation p.S1223G 0.51 tolerated_low_confidence(0.34) benign(0.092) TCGA-W3-AA1V-06 2 227659929 227659929 C T IRS1 Missense_Mutation p.G1176S 0.18 deleterious(0.02) benign(0.008) TCGA-W3-AA1V-06 2 227924188 227924188 C T COL4A4 Silent p.K772K 0.44 TCGA-W3-AA1V-06 2 227953449 227953449 C T COL4A4 Missense_Mutation p.G515R 0.52 probably_damaging(0.995) TCGA-W3-AA1V-06 2 228122346 228122346 G A COL4A3 Missense_Mutation p.G339R 0.48 probably_damaging(1) TCGA-W3-AA1V-06 2 228154743 228154743 G A COL4A3 Silent p.G1003G 0.27 TCGA-W3-AA1V-06 2 228786168 228786168 G A DAW1 Silent p.T368T 0.23 TCGA-W3-AA1V-06 2 228881360 228881360 C T SPHKAP Missense_Mutation p.E1404K 0.22 tolerated(0.14) benign(0.019) TCGA-W3-AA1V-06 2 228882266 228882266 A G SPHKAP Silent p.L1102L 0.24 TCGA-W3-AA1V-06 2 228882759 228882759 G A SPHKAP Silent p.V937V 0.27 TCGA-W3-AA1V-06 2 228884573 228884573 C T SPHKAP Missense_Mutation p.E333K 0.38 tolerated(0.11) benign(0.019) TCGA-W3-AA1V-06 2 228886443 228886443 C T SPHKAP Silent p.V227V 0.30 TCGA-W3-AA1V-06 2 228890142 228890142 C T SPHKAP Missense_Mutation p.G137R 0.29 deleterious(0) possibly_damaging(0.889) TCGA-W3-AA1V-06 2 230231729 230231729 C T DNER Silent p.L654L 0.56 TCGA-W3-AA1V-06 2 230911343 230911343 C T SLC16A14 Missense_Mutation p.G167R 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 231048334 231048334 G A SP110 Silent p.I434I 0.48 TCGA-W3-AA1V-06 2 231077691 231077691 G A SP110 Missense_Mutation p.A123V 0.15 tolerated(0.28) possibly_damaging(0.682) TCGA-W3-AA1V-06 2 231106142 231106142 C T SP140 Nonsense_Mutation p.Q144* 0.32 TCGA-W3-AA1V-06 2 231112650 231112650 G A SP140 Missense_Mutation p.M254I 0.30 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 2 231222634 231222634 C T SP140L Silent p.F74F 0.55 TCGA-W3-AA1V-06 2 231250018 231250018 G A SP140L Silent p.R261R 0.15 TCGA-W3-AA1V-06 2 231973839 231973839 T G HTR2B Missense_Mutation p.K280Q 0.32 tolerated(0.17) benign(0.314) TCGA-W3-AA1V-06 2 232390126 232390126 G A NMUR1 Silent p.V303V 0.16 TCGA-W3-AA1V-06 2 232457747 232457747 C T C2orf57 Missense_Mutation p.P29S 0.33 tolerated(0.32) probably_damaging(0.932) TCGA-W3-AA1V-06 2 232597637 232597637 C T PDE6D 3'UTR 0.18 TCGA-W3-AA1V-06 2 233272996 233272996 G A ALPPL2 Missense_Mutation p.R223Q 0.33 deleterious(0.01) benign(0.405) TCGA-W3-AA1V-06 2 233320871 233320871 G A ALPI 5'UTR 0.28 TCGA-W3-AA1V-06 2 233393311 233393311 C T CHRND Missense_Mutation p.P152S 0.24 tolerated(0.9) benign(0.307) TCGA-W3-AA1V-06 2 233396161 233396161 C T CHRND Missense_Mutation p.P307L 0.29 deleterious(0) possibly_damaging(0.905) TCGA-W3-AA1V-06 2 233396162 233396162 C T CHRND Silent p.P307P 0.25 TCGA-W3-AA1V-06 2 233899540 233899540 G A NEU2 Missense_Mutation p.D306N 0.25 tolerated(1) benign(0.02) TCGA-W3-AA1V-06 2 233986927 233986927 G A INPP5D Silent p.L103L 0.33 TCGA-W3-AA1V-06 2 233990624 233990624 C T INPP5D Silent p.T173T 0.28 TCGA-W3-AA1V-06 2 234183339 234183339 C T ATG16L1 Missense_Mutation p.S290F 0.61 deleterious(0.04) probably_damaging(0.909) TCGA-W3-AA1V-06 2 234227432 234227432 G A SAG Missense_Mutation p.G58R 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-W3-AA1V-06 2 234243696 234243696 C T SAG Silent p.L299L 0.24 TCGA-W3-AA1V-06 2 234545975 234545975 G A UGT1A10 Missense_Mutation p.M269I 0.56 tolerated(0.08) benign(0.042) TCGA-W3-AA1V-06 2 234580697 234580697 C T UGT1A9 Silent p.F39F 0.20 TCGA-W3-AA1V-06 2 234581345 234581345 G A UGT1A9 Silent p.T255T 0.50 TCGA-W3-AA1V-06 2 234652078 234652078 G A UGT1A10 Intron 0.40 TCGA-W3-AA1V-06 2 234835188 234835188 C T TRPM8 Silent p.S2S 0.46 TCGA-W3-AA1V-06 2 234851410 234851410 G A TRPM8 Intron 0.29 TCGA-W3-AA1V-06 2 234871935 234871935 C T TRPM8 Missense_Mutation p.P555S 0.31 tolerated(0.3) benign(0.001) TCGA-W3-AA1V-06 2 236957796 236957796 G A AGAP1 Missense_Mutation p.R662Q 0.25 deleterious(0) benign(0.416) TCGA-W3-AA1V-06 2 237489747 237489747 G A ACKR3 Silent p.E213E 0.20 TCGA-W3-AA1V-06 2 239039082 239039082 C T ESPNL Missense_Mutation p.S576F 0.33 deleterious(0.04) possibly_damaging(0.553) TCGA-W3-AA1V-06 2 239167214 239167214 A C PER2 Missense_Mutation p.F567V 0.62 tolerated(0.5) benign(0.004) TCGA-W3-AA1V-06 2 239355093 239355093 C T ASB1 Missense_Mutation p.H317Y 0.45 tolerated(0.52) benign(0.002) TCGA-W3-AA1V-06 2 239355102 239355102 C T ASB1 Missense_Mutation p.P320S 0.48 tolerated(0.59) benign(0.018) TCGA-W3-AA1V-06 2 240066356 240066356 C T HDAC4 Missense_Mutation p.R263K 0.27 deleterious(0.02) benign(0.314) TCGA-W3-AA1V-06 2 241451336 241451336 G A ANKMY1 Missense_Mutation p.P654L 0.25 deleterious(0) possibly_damaging(0.821) TCGA-W3-AA1V-06 2 241451337 241451337 G A ANKMY1 Missense_Mutation p.P654S 0.27 tolerated(0.07) possibly_damaging(0.812) TCGA-W3-AA1V-06 2 241468548 241468548 C T ANKMY1 Missense_Mutation p.E198K 0.22 tolerated(0.13) benign(0.016) TCGA-W3-AA1V-06 2 241533354 241533354 C T CAPN10 Silent p.F240F 0.23 TCGA-W3-AA1V-06 2 241534030 241534030 T C CAPN10 Missense_Mutation p.F301L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 241989284 241989284 G A SNED1 Missense_Mutation p.D557N 0.28 tolerated(0.26) benign(0.104) TCGA-W3-AA1V-06 2 242066000 242066000 G A PASK Missense_Mutation p.S777F 0.53 deleterious(0.02) probably_damaging(0.997) TCGA-W3-AA1V-06 2 242082323 242082323 G A PASK Missense_Mutation p.S42F 0.48 deleterious(0.01) probably_damaging(0.982) TCGA-W3-AA1V-06 2 242135279 242135279 G A ANO7 Intron 0.20 TCGA-W3-AA1V-06 2 242149002 242149002 G A ANO7 Silent p.R491R 0.30 TCGA-W3-AA1V-06 2 242380730 242380730 C T FARP2 Silent p.F390F 0.48 TCGA-W3-AA1V-06 2 24261647 24261647 G A C2orf44 Missense_Mutation p.P240S 0.32 tolerated(0.08) benign(0.316) TCGA-W3-AA1V-06 2 24261695 24261695 G A C2orf44 Missense_Mutation p.P224S 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 24261948 24261948 G A C2orf44 Silent p.F139F 0.67 TCGA-W3-AA1V-06 2 24929991 24929991 C T NCOA1 Missense_Mutation p.S551F 0.27 deleterious(0.02) possibly_damaging(0.73) TCGA-W3-AA1V-06 2 25013294 25013294 G A PTRHD1 Nonsense_Mutation p.R137* 0.24 TCGA-W3-AA1V-06 2 25038608 25038608 C T CENPO Nonsense_Mutation p.Q193* 0.27 TCGA-W3-AA1V-06 2 25141500 25141500 G T ADCY3 Silent p.I119I 0.20 TCGA-W3-AA1V-06 2 25384089 25384089 C T POMC Missense_Mutation p.R222K 0.19 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 2 25505532 25505532 G A DNMT3A Missense_Mutation p.P76S 0.23 tolerated_low_confidence(0.51) benign(0) TCGA-W3-AA1V-06 2 25965761 25965761 G A ASXL2 Missense_Mutation p.R1149C 0.26 deleterious(0) probably_damaging(0.953) TCGA-W3-AA1V-06 2 26702507 26702507 C T OTOF Missense_Mutation p.E643K 0.48 tolerated(0.84) benign(0.001) TCGA-W3-AA1V-06 2 26739371 26739371 C T OTOF Missense_Mutation p.E142K 0.26 tolerated(0.34) possibly_damaging(0.524) TCGA-W3-AA1V-06 2 26951376 26951376 C T KCNK3 Silent p.S375S 0.50 TCGA-W3-AA1V-06 2 26998480 26998480 C T SLC35F6 Silent p.V157V 0.29 TCGA-W3-AA1V-06 2 272235 272235 G C ACP1 Missense_Mutation p.R54P 0.21 tolerated(0.05) possibly_damaging(0.515) TCGA-W3-AA1V-06 2 27260525 27260525 C T TMEM214 Silent p.F369F 0.48 TCGA-W3-AA1V-06 2 27373026 27373026 G A TCF23 Silent p.R86R 0.53 TCGA-W3-AA1V-06 2 27454955 27454955 C T CAD Silent p.F836F 0.55 TCGA-W3-AA1V-06 2 27456986 27456986 C T CAD Silent p.P1170P 0.58 TCGA-W3-AA1V-06 2 27458419 27458419 C T CAD Missense_Mutation p.L1329F 0.25 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 2 27463806 27463806 G A CAD Missense_Mutation p.R1874Q 0.12 tolerated(0.55) benign(0.006) TCGA-W3-AA1V-06 2 27485717 27485717 C T SLC30A3 Missense_Mutation p.D20N 0.68 tolerated(0.06) benign(0.011) TCGA-W3-AA1V-06 2 27485718 27485718 C T SLC30A3 Silent p.R19R 0.70 TCGA-W3-AA1V-06 2 27607748 27607748 G A PPM1G Missense_Mutation p.P206L 0.68 tolerated(0.26) possibly_damaging(0.713) TCGA-W3-AA1V-06 2 27667341 27667341 C T IFT172 Silent p.Q1736Q 0.31 TCGA-W3-AA1V-06 2 27667342 27667342 T C IFT172 Missense_Mutation p.Q1736R 0.31 tolerated(0.21) benign(0.002) TCGA-W3-AA1V-06 2 27730902 27730902 C T GCKR Silent p.I433I 0.22 TCGA-W3-AA1V-06 2 27800145 27800145 G A C2orf16 Missense_Mutation p.E236K 0.17 tolerated(0.11) possibly_damaging(0.77) TCGA-W3-AA1V-06 2 27880340 27880340 G A SUPT7L Missense_Mutation p.R206W 0.44 tolerated(0.19) possibly_damaging(0.729) TCGA-W3-AA1V-06 2 27880341 27880341 G A SUPT7L Silent p.A205A 0.40 TCGA-W3-AA1V-06 2 28521256 28521256 C T BRE Missense_Mutation p.S329F 0.47 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 28764648 28764648 C T PLB1 Silent p.F283F 0.28 TCGA-W3-AA1V-06 2 29240660 29240660 C T FAM179A Missense_Mutation p.L400F 0.44 tolerated(0.2) benign(0.247) TCGA-W3-AA1V-06 2 29247148 29247148 C T FAM179A Silent p.F587F 0.25 TCGA-W3-AA1V-06 2 29294526 29294526 C T C2orf71 Missense_Mutation p.G868R 0.18 tolerated(0.27) benign(0.277) TCGA-W3-AA1V-06 2 29446239 29446239 C T ALK Missense_Mutation p.E1110K 0.59 deleterious(0) possibly_damaging(0.697) TCGA-W3-AA1V-06 2 29449823 29449823 C T ALK Missense_Mutation p.G1011E 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-W3-AA1V-06 2 29455219 29455219 C T ALK Silent p.L861L 0.32 TCGA-W3-AA1V-06 2 29456466 29456466 C T ALK Missense_Mutation p.G818R 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 30863213 30863213 T A LCLAT1 Missense_Mutation p.F325I 0.20 tolerated(0.13) benign(0.065) TCGA-W3-AA1V-06 2 31133663 31133663 C T GALNT14 3'UTR 0.31 TCGA-W3-AA1V-06 2 31135169 31135169 C T GALNT14 Missense_Mutation p.E479K 0.22 tolerated(0.08) benign(0.209) TCGA-W3-AA1V-06 2 31178589 31178589 C T GALNT14 Silent p.R188R 0.19 TCGA-W3-AA1V-06 2 31484525 31484525 C T EHD3 Silent p.I342I 0.32 TCGA-W3-AA1V-06 2 31590882 31590882 C T XDH Silent p.K714K 0.28 TCGA-W3-AA1V-06 2 31591443 31591443 G A XDH Silent p.I688I 0.19 TCGA-W3-AA1V-06 2 31593230 31593230 C T XDH Silent p.A657A 0.24 TCGA-W3-AA1V-06 2 31593247 31593247 C T XDH Missense_Mutation p.D652N 0.43 deleterious(0.04) probably_damaging(1) TCGA-W3-AA1V-06 2 31621464 31621464 C T XDH Missense_Mutation p.M136I 0.57 tolerated(0.25) benign(0.005) TCGA-W3-AA1V-06 2 31624124 31624124 C T XDH Missense_Mutation p.G90R 0.17 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 2 3197800 3197800 G A TSSC1 Missense_Mutation p.P264L 0.43 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 2 32449780 32449780 C T NLRC4 Missense_Mutation p.G946E 0.28 tolerated(1) benign(0.008) TCGA-W3-AA1V-06 2 32667449 32667449 C T BIRC6 Silent p.I1388I 0.30 TCGA-W3-AA1V-06 2 33412001 33412001 G A LTBP1 Missense_Mutation p.G427E 0.20 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 2 38202391 38202391 C T RMDN2 Missense_Mutation p.R400C 0.42 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 38301835 38301835 G A CYP1B1 Missense_Mutation p.R233C 0.14 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 2 39029864 39029864 G A DHX57 Missense_Mutation p.S1337F 0.50 deleterious(0) probably_damaging(0.933) TCGA-W3-AA1V-06 2 39088443 39088443 G A DHX57 Missense_Mutation p.P370L 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 40657169 40657169 G T SLC8A1 Silent p.A84A 0.25 TCGA-W3-AA1V-06 2 43010935 43010935 G A HAAO Missense_Mutation p.R78W 0.26 deleterious(0) possibly_damaging(0.884) TCGA-W3-AA1V-06 2 45170011 45170011 C T SIX3 Silent p.N256N 0.27 TCGA-W3-AA1V-06 2 46203648 46203648 C T PRKCE Missense_Mutation p.H165Y 0.55 deleterious(0.01) probably_damaging(0.955) TCGA-W3-AA1V-06 2 47613805 47613805 A C EPCAM 3'UTR 0.31 TCGA-W3-AA1V-06 2 50758569 50758569 C T NRXN1 Splice_Site p.X755_splice 0.21 TCGA-W3-AA1V-06 2 51255054 51255054 G A NRXN1 Missense_Mutation p.R120C 0.19 deleterious(0.03) possibly_damaging(0.707) TCGA-W3-AA1V-06 2 54023143 54023143 C T ERLEC1 Missense_Mutation p.S114F 0.32 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 2 54128679 54128679 G A PSME4 Silent p.L1031L 0.22 TCGA-W3-AA1V-06 2 54131219 54131219 G A PSME4 Silent p.P1006P 0.46 TCGA-W3-AA1V-06 2 54131220 54131220 G A PSME4 Missense_Mutation p.P1006L 0.46 deleterious(0) possibly_damaging(0.852) TCGA-W3-AA1V-06 2 54146320 54146320 T C PSME4 Silent p.L828L 0.14 TCGA-W3-AA1V-06 2 54482967 54482967 C T TSPYL6 Missense_Mutation p.D108N 0.20 tolerated(0.14) benign(0.059) TCGA-W3-AA1V-06 2 54587377 54587377 G A C2orf73 Missense_Mutation p.G181D 0.14 tolerated(0.44) possibly_damaging(0.735) TCGA-W3-AA1V-06 2 55214710 55214710 G A RTN4 Silent p.A1046A 0.28 TCGA-W3-AA1V-06 2 55214770 55214770 G A RTN4 Silent p.F1026F 0.23 TCGA-W3-AA1V-06 2 55543163 55543163 G A CCDC88A Silent p.S1277S 0.28 TCGA-W3-AA1V-06 2 55543164 55543164 G A CCDC88A Missense_Mutation p.S1277F 0.28 tolerated(0.07) possibly_damaging(0.713) TCGA-W3-AA1V-06 2 55785951 55785951 G A SMEK2 Missense_Mutation p.S805F 0.30 deleterious(0.01) benign(0.342) TCGA-W3-AA1V-06 2 61315542 61315542 C T KIAA1841 Missense_Mutation p.P343S 0.41 tolerated(0.4) benign(0.001) TCGA-W3-AA1V-06 2 62450057 62450057 C T B3GNT2 Silent p.S234S 0.20 TCGA-W3-AA1V-06 2 63086381 63086381 C T EHBP1 Missense_Mutation p.P273S 0.61 tolerated(0.28) benign(0.004) TCGA-W3-AA1V-06 2 63223880 63223880 C T EHBP1 Missense_Mutation p.L1099F 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 65492438 65492438 C T ACTR2 Intron 0.55 TCGA-W3-AA1V-06 2 69586438 69586438 C T GFPT1 Missense_Mutation p.G124R 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 2 70890805 70890805 C T ADD2 Missense_Mutation p.E645K 0.28 tolerated(0.61) benign(0.026) TCGA-W3-AA1V-06 2 70903897 70903897 C T ADD2 Intron 0.39 TCGA-W3-AA1V-06 2 71062686 71062686 G A CD207 Silent p.V42V 0.50 TCGA-W3-AA1V-06 2 71062729 71062729 G A CD207 Missense_Mutation p.P28L 0.53 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1V-06 2 71211340 71211340 G A ANKRD53 Intron 0.14 TCGA-W3-AA1V-06 2 71417066 71417066 G A PAIP2B Missense_Mutation p.P75L 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-W3-AA1V-06 2 71825798 71825798 G A DYSF Missense_Mutation p.E1227K 0.49 deleterious(0.01) possibly_damaging(0.637) TCGA-W3-AA1V-06 2 73303291 73303291 G A RAB11FIP5 Missense_Mutation p.L530F 0.57 deleterious(0.01) possibly_damaging(0.544) TCGA-W3-AA1V-06 2 73653598 73653598 G C ALMS1 Missense_Mutation p.V419L 0.18 benign(0.001) TCGA-W3-AA1V-06 2 73677313 73677313 C T ALMS1 Missense_Mutation p.P1219L 0.54 benign(0.098) TCGA-W3-AA1V-06 2 73717239 73717239 C T ALMS1 Missense_Mutation p.S2717L 0.32 probably_damaging(0.977) TCGA-W3-AA1V-06 2 73717974 73717974 C T ALMS1 Missense_Mutation p.P2962L 0.24 possibly_damaging(0.503) TCGA-W3-AA1V-06 2 74042283 74042283 C T C2orf78 Silent p.F311F 0.33 TCGA-W3-AA1V-06 2 74043192 74043192 T C C2orf78 Silent p.L614L 0.21 TCGA-W3-AA1V-06 2 74043491 74043491 G A C2orf78 Missense_Mutation p.G714E 0.20 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 2 74043803 74043803 C T C2orf78 Missense_Mutation p.S818L 0.45 deleterious(0.01) benign(0.056) TCGA-W3-AA1V-06 2 74273530 74273530 C T TET3 Silent p.P27P 0.55 TCGA-W3-AA1V-06 2 74274275 74274275 C T TET3 Missense_Mutation p.P276S 0.28 tolerated(0.32) benign(0.001) TCGA-W3-AA1V-06 2 74274778 74274778 G A TET3 Silent p.K443K 0.50 TCGA-W3-AA1V-06 2 74542153 74542153 C T SLC4A5 Splice_Site 0.44 TCGA-W3-AA1V-06 2 74589805 74589805 G A DCTN1 Missense_Mutation p.S1194F 0.27 deleterious(0.02) benign(0.231) TCGA-W3-AA1V-06 2 74605368 74605368 G A DCTN1 Missense_Mutation p.P13L 0.21 deleterious_low_confidence(0.05) benign(0.002) TCGA-W3-AA1V-06 2 74746356 74746356 A T DQX1 Missense_Mutation p.V603E 0.25 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 2 74783803 74783803 C T DOK1 Silent p.L336L 0.19 TCGA-W3-AA1V-06 2 75278503 75278503 G A TACR1 Silent p.L269L 0.27 TCGA-W3-AA1V-06 2 79312626 79312626 G A REG1B Missense_Mutation p.S142L 0.41 tolerated(0.18) possibly_damaging(0.698) TCGA-W3-AA1V-06 2 79313613 79313613 C T REG1B Missense_Mutation p.M67I 0.21 tolerated(0.18) benign(0.02) TCGA-W3-AA1V-06 2 79385837 79385837 C T REG3A Silent p.K45K 0.16 TCGA-W3-AA1V-06 2 80529670 80529670 G A LRRTM1 Silent p.I425I 0.60 TCGA-W3-AA1V-06 2 84517974 84517974 G A FUNDC2P2 RNA 0.16 TCGA-W3-AA1V-06 2 84811252 84811252 C T DNAH6 Missense_Mutation p.R787W 0.17 deleterious(0) possibly_damaging(0.843) TCGA-W3-AA1V-06 2 85616896 85616896 C T ELMOD3 Missense_Mutation p.S254F 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-W3-AA1V-06 2 86705312 86705312 C T KDM3A Silent p.F704F 0.24 TCGA-W3-AA1V-06 2 86832101 86832101 G A RNF103 Missense_Mutation p.S308F 0.17 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 87085229 87085229 G A CD8B Silent p.I118I 0.27 TCGA-W3-AA1V-06 2 89185547 89185547 G A IGKV4-1 Missense_Mutation p.E81K 0.18 tolerated(0.34) benign(0.145) TCGA-W3-AA1V-06 2 8919244 8919244 G A KIDINS220 Missense_Mutation p.P799L 0.23 deleterious(0) probably_damaging(0.951) TCGA-W3-AA1V-06 2 89309757 89309757 G A IGKV1-9 Nonsense_Mutation p.Q25* 0.23 TCGA-W3-AA1V-06 2 89513054 89513054 G A IGKV1-27 Silent p.L69L 0.57 TCGA-W3-AA1V-06 2 90139432 90139432 C T IGKV1D-16 Missense_Mutation p.S68F 0.50 tolerated(0.05) benign(0.001) TCGA-W3-AA1V-06 2 90139508 90139508 C T IGKV1D-16 Silent p.F93F 0.25 TCGA-W3-AA1V-06 2 90192975 90192975 C A IGKV1D-13 Missense_Mutation p.L10M 0.16 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 95542470 95542470 C T TEKT4 Missense_Mutation p.R422C 0.27 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 2 96262019 96262019 G A TRIM43 Missense_Mutation p.E193K 0.25 tolerated(0.09) benign(0.317) TCGA-W3-AA1V-06 2 96781350 96781350 G A ADRA2B Missense_Mutation p.S180F 0.56 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 2 96943617 96943617 G A SNRNP200 Silent p.L1894L 0.47 TCGA-W3-AA1V-06 2 97171003 97171003 G A NEURL3 RNA 0.36 TCGA-W3-AA1V-06 2 97217276 97217276 C T ARID5A Silent p.A337A 0.27 TCGA-W3-AA1V-06 2 97365700 97365700 C T FER1L5 RNA 0.39 TCGA-W3-AA1V-06 2 97365701 97365701 C T FER1L5 RNA 0.42 TCGA-W3-AA1V-06 2 97513988 97513988 G A ANKRD39 3'UTR 0.20 TCGA-W3-AA1V-06 2 97751541 97751541 G A FAHD2B Missense_Mutation p.R194C 0.50 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 2 98373584 98373584 G A TMEM131 Missense_Mutation p.S1877L 0.49 deleterious_low_confidence(0) benign(0.037) TCGA-W3-AA1V-06 2 98804506 98804506 G A VWA3B Silent p.G460G 0.24 TCGA-W3-AA1V-06 2 98844781 98844781 G A VWA3B Silent p.K712K 0.06 TCGA-W3-AA1V-06 2 98846533 98846533 C T VWA3B Missense_Mutation p.S724F 0.51 deleterious(0) benign(0.062) TCGA-W3-AA1V-06 2 98887331 98887331 C G VWA3B Missense_Mutation p.N1010K 0.17 tolerated(0.22) benign(0.003) TCGA-W3-AA1V-06 2 98928884 98928884 G A VWA3B 3'UTR 0.46 TCGA-W3-AA1V-06 2 99242248 99242248 G A MGAT4A Missense_Mutation p.P507S 0.31 tolerated(0.06) benign(0.254) TCGA-W3-AA1V-06 2 99995881 99995881 T C EIF5B Missense_Mutation p.M684T 0.55 benign(0.18) TCGA-W3-AA1V-06 3 100948325 100948325 G A IMPG2 Missense_Mutation p.P1178S 0.36 tolerated(0.09) benign(0.023) TCGA-W3-AA1V-06 3 100949806 100949806 G A IMPG2 Silent p.P1139P 0.39 TCGA-W3-AA1V-06 3 101022993 101022993 C T IMPG2 Missense_Mutation p.M166I 0.39 tolerated(0.05) benign(0.114) TCGA-W3-AA1V-06 3 101085371 101085371 G A SENP7 Silent p.S407S 0.48 TCGA-W3-AA1V-06 3 101232040 101232040 G A SENP7 5'Flank 0.40 TCGA-W3-AA1V-06 3 10128924 10128924 T C FANCD2 Missense_Mutation p.S1148P 0.21 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 3 101520671 101520671 T C NXPE3 Missense_Mutation p.L229P 0.35 deleterious(0) probably_damaging(0.912) TCGA-W3-AA1V-06 3 10280469 10280469 G A IRAK2 Missense_Mutation p.R504Q 0.22 tolerated(0.13) benign(0.233) TCGA-W3-AA1V-06 3 10387143 10387143 G A ATP2B2 Silent p.S876S 0.51 TCGA-W3-AA1V-06 3 10401750 10401750 G A ATP2B2 Silent p.L573L 0.26 TCGA-W3-AA1V-06 3 10401760 10401760 C T ATP2B2 Silent p.T569T 0.17 TCGA-W3-AA1V-06 3 105400254 105400254 G A CBLB Intron 0.27 TCGA-W3-AA1V-06 3 108129497 108129497 G A MYH15 Silent p.L1496L 0.45 TCGA-W3-AA1V-06 3 108147646 108147646 G A MYH15 Missense_Mutation p.T1152I 0.32 deleterious(0.04) benign(0.023) TCGA-W3-AA1V-06 3 108216908 108216908 C T MYH15 Silent p.R223R 0.25 TCGA-W3-AA1V-06 3 108287095 108287095 G A KIAA1524 Missense_Mutation p.L394F 0.30 deleterious(0.01) possibly_damaging(0.543) TCGA-W3-AA1V-06 3 108549517 108549517 G A TRAT1 Missense_Mutation p.G3E 0.21 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-W3-AA1V-06 3 108565931 108565931 A G TRAT1 Missense_Mutation p.I57V 0.25 tolerated(0.87) benign(0.023) TCGA-W3-AA1V-06 3 108572708 108572708 G A TRAT1 Missense_Mutation p.R182K 0.25 tolerated(1) benign(0.012) TCGA-W3-AA1V-06 3 108572833 108572833 C T TRAT1 3'UTR 0.42 TCGA-W3-AA1V-06 3 108672495 108672495 C T GUCA1C Missense_Mutation p.E39K 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-W3-AA1V-06 3 108672634 108672634 C T GUCA1C 5'UTR 0.51 TCGA-W3-AA1V-06 3 108812295 108812295 C T MORC1 Missense_Mutation p.G226E 0.33 tolerated(0.32) benign(0.263) TCGA-W3-AA1V-06 3 108813795 108813795 C T MORC1 Missense_Mutation p.E182K 0.38 deleterious(0.01) possibly_damaging(0.52) TCGA-W3-AA1V-06 3 108818259 108818259 C T MORC1 Silent p.T123T 0.14 TCGA-W3-AA1V-06 3 108819293 108819293 G A MORC1 Silent p.F95F 0.22 TCGA-W3-AA1V-06 3 109027920 109027920 C T DPPA2 Missense_Mutation p.E117K 0.38 tolerated(0.07) benign(0.008) TCGA-W3-AA1V-06 3 109050735 109050735 G A DPPA4 Silent p.L108L 0.21 TCGA-W3-AA1V-06 3 10976834 10976834 C T SLC6A11 Silent p.I565I 0.27 TCGA-W3-AA1V-06 3 10980091 10980091 G A SLC6A11 3'UTR 0.52 TCGA-W3-AA1V-06 3 11058850 11058850 G A SLC6A1 5'UTR 0.70 TCGA-W3-AA1V-06 3 11067950 11067950 C T SLC6A1 Missense_Mutation p.S328L 0.26 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 3 111312582 111312582 C A ZBED2 Missense_Mutation p.R156M 0.34 deleterious(0) possibly_damaging(0.594) TCGA-W3-AA1V-06 3 111639203 111639203 T A PHLDB2 Silent p.I646I 0.41 TCGA-W3-AA1V-06 3 111664166 111664166 G T PHLDB2 Missense_Mutation p.G817W 0.33 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 3 111664168 111664168 G A PHLDB2 Silent p.G817G 0.33 TCGA-W3-AA1V-06 3 111664189 111664189 C A PHLDB2 Silent p.P824P 0.35 TCGA-W3-AA1V-06 3 111685491 111685491 G A PHLDB2 Missense_Mutation p.E1037K 0.32 deleterious(0) possibly_damaging(0.834) TCGA-W3-AA1V-06 3 111981785 111981785 T A SLC9C1 Nonsense_Mutation p.K395* 0.29 TCGA-W3-AA1V-06 3 111997653 111997653 G A SLC9C1 Missense_Mutation p.R81C 0.36 tolerated(0.12) benign(0.004) TCGA-W3-AA1V-06 3 112277251 112277251 T C ATG3 Missense_Mutation p.K29R 0.39 tolerated(0.78) benign(0.06) TCGA-W3-AA1V-06 3 112299563 112299563 C T SLC35A5 Missense_Mutation p.P200L 0.28 tolerated(0.45) benign(0.001) TCGA-W3-AA1V-06 3 113187078 113187078 C T SPICE1 Missense_Mutation p.E355K 0.30 deleterious(0) probably_damaging(0.932) TCGA-W3-AA1V-06 3 113376764 113376764 G A KIAA2018 Silent p.A1255A 0.38 TCGA-W3-AA1V-06 3 113737698 113737698 G A KIAA1407 Silent p.F330F 0.29 TCGA-W3-AA1V-06 3 113850050 113850050 C T DRD3 Silent p.S307S 0.32 TCGA-W3-AA1V-06 3 113955785 113955785 C T ZNF80 Missense_Mutation p.G46E 0.32 tolerated(0.52) benign(0.168) TCGA-W3-AA1V-06 3 115342459 115342459 G A GAP43 5'UTR 0.53 TCGA-W3-AA1V-06 3 115395007 115395007 C T GAP43 Nonsense_Mutation p.Q96* 0.14 TCGA-W3-AA1V-06 3 115738405 115738405 G A LSAMP Silent p.G157G 0.32 TCGA-W3-AA1V-06 3 119196245 119196245 C T POGLUT1 Nonsense_Mutation p.Q136* 0.47 TCGA-W3-AA1V-06 3 119196251 119196251 C T POGLUT1 Missense_Mutation p.P138S 0.30 tolerated(0.52) benign(0.145) TCGA-W3-AA1V-06 3 119263515 119263515 G A CD80 Silent p.S100S 0.38 TCGA-W3-AA1V-06 3 119338448 119338448 C T PLA1A Missense_Mutation p.P321S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 3 119427511 119427511 T A MAATS1 Missense_Mutation p.Y145N 0.23 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 3 119434624 119434624 G A MAATS1 Intron 0.42 TCGA-W3-AA1V-06 3 119624684 119624684 C T GSK3B Missense_Mutation p.G244D 0.43 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 119666151 119666151 G A GSK3B Silent p.V110V 0.29 TCGA-W3-AA1V-06 3 120871405 120871405 G A STXBP5L Missense_Mutation p.E251K 0.43 deleterious(0.05) possibly_damaging(0.868) TCGA-W3-AA1V-06 3 120924843 120924843 A G STXBP5L Silent p.K317K 0.40 TCGA-W3-AA1V-06 3 121097641 121097641 C T STXBP5L Missense_Mutation p.S776L 0.29 tolerated(0.2) benign(0.004) TCGA-W3-AA1V-06 3 121126222 121126222 G T STXBP5L Missense_Mutation p.R931M 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-W3-AA1V-06 3 121126354 121126354 C T STXBP5L Missense_Mutation p.T975M 0.28 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 3 121206504 121206504 G A POLQ Silent p.N1758N 0.32 TCGA-W3-AA1V-06 3 121207559 121207559 C T POLQ Missense_Mutation p.V1407I 0.38 tolerated(0.69) benign(0.002) TCGA-W3-AA1V-06 3 121208858 121208858 G A POLQ Nonsense_Mutation p.Q974* 0.29 TCGA-W3-AA1V-06 3 121208859 121208859 G A POLQ Silent p.F973F 0.29 TCGA-W3-AA1V-06 3 121340501 121340501 C T FBXO40 Silent p.S75S 0.47 TCGA-W3-AA1V-06 3 121340891 121340891 A T FBXO40 Missense_Mutation p.K205N 0.32 deleterious(0.03) possibly_damaging(0.823) TCGA-W3-AA1V-06 3 121341633 121341633 G A FBXO40 Missense_Mutation p.G453R 0.21 tolerated(0.55) benign(0.003) TCGA-W3-AA1V-06 3 121345686 121345686 C T FBXO40 Missense_Mutation p.P687S 0.33 tolerated(0.84) benign(0.002) TCGA-W3-AA1V-06 3 121363745 121363745 C T HCLS1 Missense_Mutation p.V107M 0.41 deleterious(0) possibly_damaging(0.86) TCGA-W3-AA1V-06 3 121363746 121363746 C T HCLS1 Silent p.E106E 0.41 TCGA-W3-AA1V-06 3 121415510 121415510 G A GOLGB1 Missense_Mutation p.S1287F 0.21 benign(0.02) TCGA-W3-AA1V-06 3 121500655 121500655 C T IQCB1 Missense_Mutation p.E449K 0.34 tolerated(0.1) benign(0.11) TCGA-W3-AA1V-06 3 121634152 121634152 C T SLC15A2 Missense_Mutation p.P203S 0.25 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 3 121641902 121641902 G A SLC15A2 Missense_Mutation p.D295N 0.34 deleterious(0.01) possibly_damaging(0.457) TCGA-W3-AA1V-06 3 121659839 121659839 G A SLC15A2 Silent p.K725K 0.37 TCGA-W3-AA1V-06 3 121720261 121720261 G A ILDR1 Silent p.L180L 0.22 TCGA-W3-AA1V-06 3 121822475 121822475 G A CD86 Missense_Mutation p.E61K 0.40 tolerated(0.49) benign(0.063) TCGA-W3-AA1V-06 3 121822640 121822640 A G CD86 Missense_Mutation p.K116E 0.32 tolerated(0.33) benign(0.013) TCGA-W3-AA1V-06 3 122003264 122003264 C T CASR Silent p.F831F 0.26 TCGA-W3-AA1V-06 3 122247235 122247235 G T PARP9 Missense_Mutation p.F847L 0.35 tolerated(0.48) benign(0.004) TCGA-W3-AA1V-06 3 122255868 122255868 G A PARP9 Silent p.I641I 0.29 TCGA-W3-AA1V-06 3 122278484 122278484 G A PARP9 5'UTR 0.34 TCGA-W3-AA1V-06 3 122418959 122418959 G A PARP14 Missense_Mutation p.A520T 0.33 deleterious(0.04) benign(0.069) TCGA-W3-AA1V-06 3 122630871 122630871 C T SEMA5B Missense_Mutation p.G1035E 0.47 deleterious(0.02) benign(0.299) TCGA-W3-AA1V-06 3 122630872 122630872 C T SEMA5B Missense_Mutation p.G1035R 0.42 deleterious(0.04) benign(0.312) TCGA-W3-AA1V-06 3 122842936 122842936 C T PDIA5 Silent p.Y211Y 0.24 TCGA-W3-AA1V-06 3 123071366 123071366 C T ADCY5 Silent p.P399P 0.35 TCGA-W3-AA1V-06 3 123219528 123219528 G A PTPLB Silent p.F172F 0.26 TCGA-W3-AA1V-06 3 123427741 123427741 C T MYLK Silent p.G648G 0.25 TCGA-W3-AA1V-06 3 123452673 123452673 C T MYLK Silent p.G390G 0.36 TCGA-W3-AA1V-06 3 123665920 123665920 G A CCDC14 Nonsense_Mutation p.R318* 0.34 TCGA-W3-AA1V-06 3 123695770 123695770 C T ROPN1 Missense_Mutation p.V59I 0.30 tolerated(0.35) benign(0.005) TCGA-W3-AA1V-06 3 123946845 123946845 C A KALRN Silent p.R26R 0.30 TCGA-W3-AA1V-06 3 12421355 12421355 G A PPARG Missense_Mutation p.E79K 0.53 tolerated_low_confidence(0.26) benign(0.118) TCGA-W3-AA1V-06 3 124385925 124385925 G A KALRN Missense_Mutation p.E291K 0.21 tolerated(0.18) benign(0.018) TCGA-W3-AA1V-06 3 124437923 124437923 C T RP11-71H17.7 5'Flank 0.38 TCGA-W3-AA1V-06 3 124449234 124449234 G A UMPS 5'UTR 0.36 TCGA-W3-AA1V-06 3 124629288 124629288 C T MUC13 Missense_Mutation p.M436I 0.27 deleterious(0.02) benign(0.218) TCGA-W3-AA1V-06 3 124951507 124951507 G A ZNF148 Missense_Mutation p.P688L 0.29 tolerated(0.66) benign(0.057) TCGA-W3-AA1V-06 3 125166620 125166620 G A SNX4 3'UTR 0.19 TCGA-W3-AA1V-06 3 126133021 126133021 C T CCDC37 Missense_Mutation p.S75F 0.33 deleterious(0.05) benign(0.004) TCGA-W3-AA1V-06 3 126222923 126222923 C T UROC1 Missense_Mutation p.D273N 0.29 tolerated(0.79) probably_damaging(0.994) TCGA-W3-AA1V-06 3 126268669 126268669 G A C3orf22 3'UTR 0.33 TCGA-W3-AA1V-06 3 126382192 126382192 C T NUP210P1 RNA 0.52 TCGA-W3-AA1V-06 3 126385989 126385989 G C NUP210P1 RNA 0.38 TCGA-W3-AA1V-06 3 128181326 128181326 C T DNAJB8 3'UTR 0.30 TCGA-W3-AA1V-06 3 128181786 128181786 C T DNAJB8 Silent p.R101R 0.28 TCGA-W3-AA1V-06 3 128200135 128200135 C T GATA2 Silent p.K390K 0.35 TCGA-W3-AA1V-06 3 12857921 12857921 T C CAND2 Missense_Mutation p.M497T 0.54 deleterious(0) benign(0.098) TCGA-W3-AA1V-06 3 128707686 128707686 A C KIAA1257 Missense_Mutation p.M113R 0.31 tolerated(0.16) benign(0.004) TCGA-W3-AA1V-06 3 128990750 128990750 C T COPG1 Nonsense_Mutation p.Q662* 0.29 TCGA-W3-AA1V-06 3 129251257 129251257 G A RHO Missense_Mutation p.E232K 0.38 tolerated(0.21) benign(0.259) TCGA-W3-AA1V-06 3 129277343 129277343 G A PLXND1 Silent p.I1791I 0.26 TCGA-W3-AA1V-06 3 129289906 129289906 C T PLXND1 Missense_Mutation p.E1193K 0.32 tolerated(0.24) benign(0.137) TCGA-W3-AA1V-06 3 130174474 130174474 G A COL6A5 Missense_Mutation p.D2252N 0.43 tolerated_low_confidence(0.28) benign(0.003) TCGA-W3-AA1V-06 3 130688154 130688154 C T ATP2C1 Nonsense_Mutation p.Q477* 0.29 TCGA-W3-AA1V-06 3 132231851 132231851 G A DNAJC13 Splice_Site p.X1765_splice 0.29 TCGA-W3-AA1V-06 3 132338334 132338334 G A ACAD11 Missense_Mutation p.P418L 0.44 tolerated(0.31) benign(0.433) TCGA-W3-AA1V-06 3 133099414 133099414 G A TMEM108 Missense_Mutation p.G287S 0.37 tolerated(0.34) benign(0.019) TCGA-W3-AA1V-06 3 133099623 133099623 C T TMEM108 Silent p.A356A 0.37 TCGA-W3-AA1V-06 3 13364917 13364917 G A NUP210 Missense_Mutation p.P1554S 0.36 tolerated(1) benign(0.015) TCGA-W3-AA1V-06 3 13367344 13367344 G A NUP210 Missense_Mutation p.S1532F 0.34 deleterious(0.03) benign(0.125) TCGA-W3-AA1V-06 3 13383510 13383510 C T NUP210 Silent p.P1026P 0.23 TCGA-W3-AA1V-06 3 133896883 133896883 C T RYK Missense_Mutation p.E404K 0.29 deleterious(0) benign(0.124) TCGA-W3-AA1V-06 3 13393634 13393634 C T NUP210 Silent p.E893E 0.19 TCGA-W3-AA1V-06 3 134076449 134076449 G A AMOTL2 3'UTR 0.38 TCGA-W3-AA1V-06 3 134079026 134079026 G T AMOTL2 Missense_Mutation p.S602Y 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 3 134197462 134197462 G A ANAPC13 Silent p.L65L 0.33 TCGA-W3-AA1V-06 3 13542274 13542274 C T HDAC11 Silent p.I158I 0.18 TCGA-W3-AA1V-06 3 135745805 135745805 T G PPP2R3A Missense_Mutation p.I709M 0.28 deleterious(0) possibly_damaging(0.506) TCGA-W3-AA1V-06 3 13679230 13679230 C T FBLN2 Silent p.I1169I 0.57 TCGA-W3-AA1V-06 3 13860596 13860596 G A WNT7A Missense_Mutation p.P299S 0.53 tolerated(0.63) benign(0.002) TCGA-W3-AA1V-06 3 139279939 139279939 G A NMNAT3 Silent p.I187I 0.33 TCGA-W3-AA1V-06 3 140123519 140123519 C T CLSTN2 Missense_Mutation p.A183V 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 140123571 140123571 C T CLSTN2 Silent p.I200I 0.34 TCGA-W3-AA1V-06 3 140281691 140281691 C T CLSTN2 Missense_Mutation p.H751Y 0.47 tolerated(0.74) benign(0.045) TCGA-W3-AA1V-06 3 141161413 141161413 C A ZBTB38 Silent p.I61I 0.33 TCGA-W3-AA1V-06 3 1414629 1414629 C T CNTN6 Silent p.I592I 0.45 TCGA-W3-AA1V-06 3 1424627 1424627 C T CNTN6 Missense_Mutation p.S723L 0.20 deleterious(0) benign(0.066) TCGA-W3-AA1V-06 3 142567065 142567065 C T PCOLCE2 Missense_Mutation p.E148K 0.31 tolerated(0.83) benign(0.075) TCGA-W3-AA1V-06 3 14566989 14566989 C T GRIP2 RNA 0.23 TCGA-W3-AA1V-06 3 146173034 146173034 G A PLSCR2 Missense_Mutation p.L178F 0.38 deleterious(0.02) possibly_damaging(0.527) TCGA-W3-AA1V-06 3 147113650 147113650 C T ZIC4 Missense_Mutation p.R276Q 0.33 deleterious(0.02) possibly_damaging(0.81) TCGA-W3-AA1V-06 3 14725840 14725840 G A C3orf20 Silent p.L192L 0.16 TCGA-W3-AA1V-06 3 148601559 148601559 C T CPA3 Missense_Mutation p.P313L 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 148764008 148764008 C T HLTF Missense_Mutation p.R644K 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 149042703 149042703 T G TM4SF18 Missense_Mutation p.D125A 0.45 tolerated(0.35) benign(0.006) TCGA-W3-AA1V-06 3 14922264 14922264 C T FGD5 Silent p.L911L 0.21 TCGA-W3-AA1V-06 3 14939540 14939540 G A FGD5 Missense_Mutation p.G1002S 0.29 tolerated(0.5) benign(0.027) TCGA-W3-AA1V-06 3 149470276 149470276 C T COMMD2 5'UTR 0.50 TCGA-W3-AA1V-06 3 149678727 149678727 G A RNF13 Missense_Mutation p.E328K 0.42 tolerated(0.75) benign(0.031) TCGA-W3-AA1V-06 3 149678754 149678754 G A RNF13 Missense_Mutation p.E337K 0.27 tolerated(0.13) probably_damaging(0.98) TCGA-W3-AA1V-06 3 150874091 150874091 G A MED12L Missense_Mutation p.E234K 0.32 tolerated(0.13) benign(0.36) TCGA-W3-AA1V-06 3 150877655 150877655 C T MED12L Missense_Mutation p.R292C 0.40 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 150916520 150916520 C T GPR171 Silent p.V218V 0.21 TCGA-W3-AA1V-06 3 151012161 151012161 G A GPR87 Silent p.I291I 0.27 TCGA-W3-AA1V-06 3 151012808 151012808 A C GPR87 Missense_Mutation p.F76V 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 151017885 151017885 C T GPR87 Missense_Mutation p.G2R 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 151155029 151155029 C T IGSF10 Silent p.G2440G 0.28 TCGA-W3-AA1V-06 3 151165344 151165344 G A IGSF10 Missense_Mutation p.P809S 0.25 deleterious(0.03) benign(0.033) TCGA-W3-AA1V-06 3 151451848 151451848 G A AADACL2 Missense_Mutation p.G9R 0.30 tolerated(0.08) unknown(0) TCGA-W3-AA1V-06 3 151474845 151474845 G A AADACL2 Silent p.Q223Q 0.38 TCGA-W3-AA1V-06 3 151475300 151475300 C T AADACL2 Missense_Mutation p.S375L 0.30 tolerated(0.72) benign(0.119) TCGA-W3-AA1V-06 3 151545702 151545702 C T AADAC Silent p.F314F 0.34 TCGA-W3-AA1V-06 3 151597670 151597670 A G SUCNR1 5'UTR 0.29 TCGA-W3-AA1V-06 3 154139057 154139057 G A GPR149 Missense_Mutation p.S465F 0.28 deleterious(0) possibly_damaging(0.534) TCGA-W3-AA1V-06 3 154862150 154862150 C T MME Silent p.V440V 0.17 TCGA-W3-AA1V-06 3 154884783 154884783 G A MME Missense_Mutation p.E585K 0.40 deleterious(0.02) possibly_damaging(0.806) TCGA-W3-AA1V-06 3 155199187 155199187 G T PLCH1 Missense_Mutation p.S1551Y 0.22 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1V-06 3 155200497 155200497 C T PLCH1 Silent p.E1114E 0.31 TCGA-W3-AA1V-06 3 155232580 155232580 G A PLCH1 Missense_Mutation p.P510S 0.47 deleterious(0.03) possibly_damaging(0.721) TCGA-W3-AA1V-06 3 155303896 155303896 C T PLCH1 Silent p.L174L 0.34 TCGA-W3-AA1V-06 3 155481480 155481480 C T C3orf33 Nonsense_Mutation p.W194* 0.20 TCGA-W3-AA1V-06 3 155571376 155571376 G A SLC33A1 Silent p.F137F 0.33 TCGA-W3-AA1V-06 3 155655428 155655428 C T GMPS Nonsense_Mutation p.R677* 0.38 TCGA-W3-AA1V-06 3 156009598 156009598 G A KCNAB1 Intron 0.30 TCGA-W3-AA1V-06 3 156413705 156413705 C T TIPARP Nonsense_Mutation p.R380* 0.30 TCGA-W3-AA1V-06 3 156745992 156745992 C T LEKR1 Missense_Mutation p.S490F 0.32 deleterious(0.01) possibly_damaging(0.683) TCGA-W3-AA1V-06 3 157815794 157815794 G A SHOX2 3'UTR 0.37 TCGA-W3-AA1V-06 3 158980383 158980383 G A IQCJ-SCHIP1 Missense_Mutation p.G68R 0.42 deleterious_low_confidence(0.01) benign(0.004) TCGA-W3-AA1V-06 3 158980384 158980384 G A IQCJ-SCHIP1 Missense_Mutation p.G68E 0.43 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1V-06 3 159606699 159606700 GT A IQCJ-SCHIP1 Frame_Shift_Del p.V505Rfs*2 0.20 TCGA-W3-AA1V-06 3 159976318 159976318 G A IFT80 Missense_Mutation p.P777S 0.23 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 3 160248644 160248644 G A KPNA4 Silent p.S156S 0.33 TCGA-W3-AA1V-06 3 160395616 160395616 G A ARL14 Missense_Mutation p.G161E 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 160945056 160945056 T C NMD3 Silent p.T67T 0.30 TCGA-W3-AA1V-06 3 161147228 161147228 C T RP11-3P17.4 RNA 0.29 TCGA-W3-AA1V-06 3 16252748 16252748 G A GALNT15 Silent p.K399K 0.34 TCGA-W3-AA1V-06 3 164906077 164906077 C T SLITRK3 Missense_Mutation p.G848R 0.23 tolerated_low_confidence(0.35) benign(0.032) TCGA-W3-AA1V-06 3 167272487 167272487 C T WDR49 Missense_Mutation p.V251I 0.34 deleterious(0.04) benign(0.038) TCGA-W3-AA1V-06 3 167728144 167728144 G A GOLIM4 Silent p.G668G 0.37 TCGA-W3-AA1V-06 3 168802643 168802643 G A MECOM 3'UTR 0.41 TCGA-W3-AA1V-06 3 168861491 168861491 C T MECOM Missense_Mutation p.D45N 0.46 tolerated(0.05) probably_damaging(0.999) TCGA-W3-AA1V-06 3 169565912 169565912 G A LRRC31 Silent p.L441L 0.36 TCGA-W3-AA1V-06 3 169572606 169572606 G A LRRC31 Missense_Mutation p.S329L 0.44 tolerated(0.25) benign(0.091) TCGA-W3-AA1V-06 3 169993023 169993023 C T PRKCI Missense_Mutation p.P218L 0.40 deleterious(0.04) benign(0.013) TCGA-W3-AA1V-06 3 169998141 169998141 C T PRKCI Missense_Mutation p.R278C 0.40 tolerated(0.12) probably_damaging(0.997) TCGA-W3-AA1V-06 3 17052188 17052188 C T PLCL2 Silent p.F324F 0.30 TCGA-W3-AA1V-06 3 170732478 170732478 C T SLC2A2 Missense_Mutation p.D51N 0.32 tolerated(0.35) benign(0.021) TCGA-W3-AA1V-06 3 17131301 17131301 C T PLCL2 Missense_Mutation p.S968L 0.28 tolerated(0.13) possibly_damaging(0.489) TCGA-W3-AA1V-06 3 171965523 171965523 T A FNDC3B Missense_Mutation p.F155L 0.33 deleterious(0.04) benign(0.059) TCGA-W3-AA1V-06 3 172080490 172080490 C T FNDC3B Missense_Mutation p.R955W 0.31 deleterious(0) possibly_damaging(0.821) TCGA-W3-AA1V-06 3 172351314 172351314 C T NCEH1 Missense_Mutation p.G433E 0.37 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 3 172834997 172834997 C T SPATA16 Nonsense_Mutation p.W175* 0.38 TCGA-W3-AA1V-06 3 183217510 183217510 A T KLHL6 Missense_Mutation p.C339S 0.29 tolerated(0.07) probably_damaging(0.937) TCGA-W3-AA1V-06 3 183273312 183273312 C T KLHL6 Missense_Mutation p.G44R 0.22 tolerated(0.14) benign(0.228) TCGA-W3-AA1V-06 3 183446612 183446612 A G YEATS2 Missense_Mutation p.Y262C 0.22 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 183707035 183707035 T C ABCC5 Missense_Mutation p.K89R 0.14 tolerated(0.54) benign(0.158) TCGA-W3-AA1V-06 3 183755949 183755949 T C HTR3D Silent p.V267V 0.35 TCGA-W3-AA1V-06 3 183818220 183818220 T A HTR3E Nonsense_Mutation p.Y20* 0.55 TCGA-W3-AA1V-06 3 183823138 183823138 T C HTR3E Missense_Mutation p.W241R 0.24 deleterious(0.02) probably_damaging(0.92) TCGA-W3-AA1V-06 3 183911441 183911441 C T ABCF3 Silent p.Y695Y 0.27 TCGA-W3-AA1V-06 3 183911442 183911442 C T ABCF3 Missense_Mutation p.R696C 0.30 deleterious(0) probably_damaging(0.953) TCGA-W3-AA1V-06 3 18393588 18393588 G T SATB1 Missense_Mutation p.P559T 0.27 deleterious(0) benign(0.173) TCGA-W3-AA1V-06 3 184070088 184070088 G A CLCN2 Missense_Mutation p.P768L 0.32 tolerated(0.08) benign(0.003) TCGA-W3-AA1V-06 3 184101148 184101148 C T CHRD Missense_Mutation p.T421M 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 184290691 184290691 G A EPHB3 Missense_Mutation p.D195N 0.31 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 184294676 184294676 C T EPHB3 Silent p.T353T 0.20 TCGA-W3-AA1V-06 3 184294703 184294703 C T EPHB3 Silent p.P362P 0.27 TCGA-W3-AA1V-06 3 184297713 184297713 C T EPHB3 Silent p.S721S 0.17 TCGA-W3-AA1V-06 3 185191103 185191103 G A MAP3K13 Missense_Mutation p.D662N 0.47 tolerated_low_confidence(0.05) benign(0.025) TCGA-W3-AA1V-06 3 185209467 185209467 G A TMEM41A Missense_Mutation p.S218F 0.17 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1V-06 3 185369896 185369896 C T IGF2BP2 Missense_Mutation p.E483K 0.17 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 3 185983091 185983091 C T DGKG Missense_Mutation p.R405K 0.36 tolerated(0.17) benign(0.007) TCGA-W3-AA1V-06 3 185990061 185990061 C T DGKG Missense_Mutation p.A328T 0.18 tolerated(0.05) benign(0.001) TCGA-W3-AA1V-06 3 185997724 185997724 C T DGKG Silent p.R236R 0.22 TCGA-W3-AA1V-06 3 186443009 186443009 C T KNG1 Missense_Mutation p.S175F 0.14 tolerated(0.09) benign(0.063) TCGA-W3-AA1V-06 3 186954019 186954019 A C MASP1 Missense_Mutation p.I547S 0.29 tolerated(0.65) benign(0.022) TCGA-W3-AA1V-06 3 186954089 186954089 C T MASP1 Missense_Mutation p.D524N 0.17 tolerated(0.36) benign(0.037) TCGA-W3-AA1V-06 3 186980420 186980420 G A MASP1 Missense_Mutation p.S109F 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 189455644 189455644 G A TP63 Missense_Mutation p.D60N 0.51 tolerated(0.62) benign(0.26) TCGA-W3-AA1V-06 3 189607195 189607195 T A TP63 Missense_Mutation p.L525H 0.58 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 3 189607196 189607196 C T TP63 Silent p.L525L 0.58 TCGA-W3-AA1V-06 3 189607215 189607215 C T TP63 Missense_Mutation p.P532S 0.17 tolerated(0.49) benign(0.084) TCGA-W3-AA1V-06 3 189689715 189689715 C T LEPREL1 Nonsense_Mutation p.W594* 0.60 TCGA-W3-AA1V-06 3 189712007 189712007 G A LEPREL1 Silent p.F233F 0.26 TCGA-W3-AA1V-06 3 190026204 190026204 G A CLDN1 Silent p.F166F 0.25 TCGA-W3-AA1V-06 3 190158178 190158178 C T TMEM207 Nonsense_Mutation p.W53* 0.21 TCGA-W3-AA1V-06 3 191000017 191000017 T G UTS2B 5'UTR 0.36 TCGA-W3-AA1V-06 3 192994554 192994554 C T ATP13A5 Silent p.V1127V 0.36 TCGA-W3-AA1V-06 3 193023415 193023415 C A ATP13A5 Nonsense_Mutation p.E871* 0.23 TCGA-W3-AA1V-06 3 193125114 193125114 G A ATP13A4 Silent p.S1122S 0.17 TCGA-W3-AA1V-06 3 193125115 193125115 G A ATP13A4 Missense_Mutation p.S1122F 0.21 deleterious(0.02) benign(0.079) TCGA-W3-AA1V-06 3 193156834 193156834 C T ATP13A4 Missense_Mutation p.G847D 0.25 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 3 193182810 193182812 CCT TC ATP13A4 Frame_Shift_Del p.R460Dfs*2 0.13 TCGA-W3-AA1V-06 3 193336693 193336693 C T OPA1 Missense_Mutation p.R198C 0.24 tolerated(0.06) benign(0.014) TCGA-W3-AA1V-06 3 193855697 193855697 C T HES1 Missense_Mutation p.P173L 0.31 tolerated(0.8) benign(0.026) TCGA-W3-AA1V-06 3 194080864 194080864 G A LRRC15 Silent p.N309N 0.21 TCGA-W3-AA1V-06 3 194392944 194392944 G A LSG1 5'UTR 0.25 TCGA-W3-AA1V-06 3 194790779 194790779 C T XXYLT1 Missense_Mutation p.E283K 0.60 tolerated(0.36) benign(0.004) TCGA-W3-AA1V-06 3 195012521 195012521 G A ACAP2 Silent p.F659F 0.19 TCGA-W3-AA1V-06 3 195505251 195505251 G A MUC4 Missense_Mutation p.T4289I 0.30 possibly_damaging(0.767) TCGA-W3-AA1V-06 3 195516197 195516197 C T MUC4 Missense_Mutation p.E752K 0.59 unknown(0) TCGA-W3-AA1V-06 3 19554801 19554801 C T KCNH8 Missense_Mutation p.P807S 0.53 tolerated(0.1) benign(0.064) TCGA-W3-AA1V-06 3 19575161 19575161 C T KCNH8 Missense_Mutation p.S965F 0.24 deleterious_low_confidence(0.02) benign(0.141) TCGA-W3-AA1V-06 3 19575303 19575303 C T KCNH8 Silent p.I1012I 0.21 TCGA-W3-AA1V-06 3 196242096 196242096 G A SMCO1 5'UTR 0.59 TCGA-W3-AA1V-06 3 196388036 196388036 G A NRROS Missense_Mutation p.D508N 0.22 tolerated(0.05) benign(0.01) TCGA-W3-AA1V-06 3 197401436 197401436 G A KIAA0226 3'Flank 0.45 TCGA-W3-AA1V-06 3 197428019 197428019 T A KIAA0226 Splice_Site p.X243_splice 0.24 TCGA-W3-AA1V-06 3 197619591 197619591 C T IQCG Missense_Mutation p.D335N 0.50 deleterious(0) probably_damaging(0.957) TCGA-W3-AA1V-06 3 197746229 197746229 C T LMLN Silent p.F483F 0.21 TCGA-W3-AA1V-06 3 19947231 19947231 C T EFHB Silent p.K433K 0.21 TCGA-W3-AA1V-06 3 21467034 21467034 G A ZNF385D Missense_Mutation p.H268Y 0.37 tolerated(0.1) probably_damaging(0.932) TCGA-W3-AA1V-06 3 24164292 24164292 G A THRB 3'UTR 0.16 TCGA-W3-AA1V-06 3 24174881 24174881 G A THRB Missense_Mutation p.H271Y 0.17 tolerated(0.07) benign(0.344) TCGA-W3-AA1V-06 3 25650705 25650705 A G TOP2B Silent p.I1349I 0.20 TCGA-W3-AA1V-06 3 2613176 2613176 C T CNTN4 5'UTR 0.30 TCGA-W3-AA1V-06 3 26751332 26751332 G A LRRC3B Missense_Mutation p.E57K 0.14 tolerated(0.07) probably_damaging(0.946) TCGA-W3-AA1V-06 3 26751401 26751401 C T LRRC3B Missense_Mutation p.P80S 0.19 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 26751649 26751649 C T LRRC3B Silent p.S162S 0.31 TCGA-W3-AA1V-06 3 27204055 27204055 G A NEK10 Silent p.P969P 0.15 TCGA-W3-AA1V-06 3 27760929 27760929 G A EOMES Silent p.S360S 0.18 TCGA-W3-AA1V-06 3 2967452 2967452 A T CNTN4 Missense_Mutation p.K449N 0.28 deleterious(0.02) possibly_damaging(0.449) TCGA-W3-AA1V-06 3 30713566 30713566 C T TGFBR2 Silent p.I322I 0.52 TCGA-W3-AA1V-06 3 3111845 3111845 C T IL5RA 3'UTR 0.55 TCGA-W3-AA1V-06 3 32031414 32031414 T G ZNF860 Silent p.T281T 0.50 TCGA-W3-AA1V-06 3 32031556 32031556 C T ZNF860 Missense_Mutation p.L329F 0.17 deleterious(0.05) benign(0.372) TCGA-W3-AA1V-06 3 3215813 3215813 G A CRBN Missense_Mutation p.H103Y 0.22 deleterious(0.03) benign(0.016) TCGA-W3-AA1V-06 3 32932357 32932357 C T TRIM71 Missense_Mutation p.P554L 0.27 deleterious(0) probably_damaging(0.959) TCGA-W3-AA1V-06 3 33183916 33183916 C T CRTAP Silent p.L394L 0.20 TCGA-W3-AA1V-06 3 35780865 35780865 G A ARPP21 Silent p.G568G 0.64 TCGA-W3-AA1V-06 3 35780999 35780999 C T ARPP21 Missense_Mutation p.P613L 0.15 deleterious(0) benign(0.05) TCGA-W3-AA1V-06 3 35781000 35781000 C T ARPP21 Silent p.P613P 0.15 TCGA-W3-AA1V-06 3 36485125 36485125 G A STAC Missense_Mutation p.M127I 0.49 deleterious(0.02) probably_damaging(0.977) TCGA-W3-AA1V-06 3 36587875 36587875 G A STAC 3'UTR 0.40 TCGA-W3-AA1V-06 3 36779056 36779056 C T DCLK3 Silent p.G365G 0.12 TCGA-W3-AA1V-06 3 36875362 36875362 G A TRANK1 Silent p.S1860S 0.40 TCGA-W3-AA1V-06 3 36875363 36875363 G A TRANK1 Missense_Mutation p.S1860F 0.40 deleterious(0.02) possibly_damaging(0.775) TCGA-W3-AA1V-06 3 36887840 36887840 T C TRANK1 Missense_Mutation p.N1653S 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 36898852 36898852 C T TRANK1 Silent p.G743G 0.28 TCGA-W3-AA1V-06 3 36898968 36898968 A C TRANK1 Missense_Mutation p.F705V 0.31 tolerated(0.5) benign(0) TCGA-W3-AA1V-06 3 36899476 36899476 G A TRANK1 Silent p.F535F 0.25 TCGA-W3-AA1V-06 3 37061840 37061840 C T MLH1 Silent p.H308H 0.34 TCGA-W3-AA1V-06 3 37584053 37584053 C T ITGA9 Missense_Mutation p.R556C 0.20 deleterious(0.01) possibly_damaging(0.846) TCGA-W3-AA1V-06 3 38017278 38017278 C T CTDSPL Missense_Mutation p.H200Y 0.21 tolerated(0.14) benign(0.086) TCGA-W3-AA1V-06 3 38047317 38047317 G A VILL Nonsense_Mutation p.W662* 0.26 TCGA-W3-AA1V-06 3 38103799 38103799 G A DLEC1 Silent p.V271V 0.18 TCGA-W3-AA1V-06 3 38104198 38104198 C T DLEC1 Missense_Mutation p.P334S 0.55 deleterious(0.04) probably_damaging(0.976) TCGA-W3-AA1V-06 3 38164098 38164098 G A DLEC1 3'UTR 0.22 TCGA-W3-AA1V-06 3 38164534 38164534 T C ACAA1 3'UTR 0.20 TCGA-W3-AA1V-06 3 38182851 38182851 C T MYD88 3'UTR 0.39 TCGA-W3-AA1V-06 3 38591728 38591728 G A SCN5A 3'UTR 0.67 TCGA-W3-AA1V-06 3 38627479 38627479 C T SCN5A Silent p.K830K 0.31 TCGA-W3-AA1V-06 3 38649660 38649660 C T SCN5A Missense_Mutation p.G327E 0.51 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 3 38739010 38739010 C T SCN10A Missense_Mutation p.E1901K 0.18 tolerated(0.06) benign(0.371) TCGA-W3-AA1V-06 3 38755460 38755460 C T SCN10A Missense_Mutation p.E1265K 0.50 deleterious(0) probably_damaging(0.944) TCGA-W3-AA1V-06 3 38764977 38764977 C T SCN10A Missense_Mutation p.R1099K 0.45 tolerated(0.34) benign(0.006) TCGA-W3-AA1V-06 3 38766779 38766779 C A SCN10A Missense_Mutation p.R1038S 0.50 tolerated(0.57) benign(0.004) TCGA-W3-AA1V-06 3 38766802 38766802 C T SCN10A Missense_Mutation p.E1031K 0.40 tolerated(0.12) benign(0.009) TCGA-W3-AA1V-06 3 38768141 38768141 C T SCN10A Missense_Mutation p.E1015K 0.14 tolerated(0.08) benign(0.004) TCGA-W3-AA1V-06 3 38768382 38768382 C T SCN10A Silent p.R934R 0.14 TCGA-W3-AA1V-06 3 38768383 38768383 C T SCN10A Missense_Mutation p.R934K 0.16 tolerated(0.47) benign(0.012) TCGA-W3-AA1V-06 3 38783809 38783809 G A SCN10A Silent p.F693F 0.21 TCGA-W3-AA1V-06 3 38791670 38791670 G A SCN10A Silent p.F587F 0.71 TCGA-W3-AA1V-06 3 38812875 38812875 G A SCN10A Missense_Mutation p.T165I 0.21 tolerated(0.09) possibly_damaging(0.679) TCGA-W3-AA1V-06 3 3887476 3887476 C T LRRN1 Missense_Mutation p.S384F 0.59 tolerated(0.08) benign(0.057) TCGA-W3-AA1V-06 3 38936114 38936114 C T SCN11A Nonsense_Mutation p.W915* 0.32 TCGA-W3-AA1V-06 3 38936115 38936115 C T SCN11A Nonsense_Mutation p.W915* 0.32 TCGA-W3-AA1V-06 3 38938347 38938347 C T SCN11A Missense_Mutation p.G798R 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 38938558 38938558 G A SCN11A Silent p.F727F 0.14 TCGA-W3-AA1V-06 3 38949535 38949535 G A SCN11A Missense_Mutation p.L460F 0.21 tolerated(0.23) benign(0.008) TCGA-W3-AA1V-06 3 39161413 39161413 G A TTC21A Missense_Mutation p.A276T 0.24 deleterious(0) benign(0.128) TCGA-W3-AA1V-06 3 39171606 39171606 C T TTC21A Silent p.S731S 0.10 TCGA-W3-AA1V-06 3 39225938 39225938 G A XIRP1 Missense_Mutation p.P1667S 0.25 tolerated(0.27) benign(0.007) TCGA-W3-AA1V-06 3 39227971 39227971 C T XIRP1 Missense_Mutation p.G989E 0.28 deleterious(0) possibly_damaging(0.722) TCGA-W3-AA1V-06 3 39229955 39229955 C T XIRP1 Missense_Mutation p.D328N 0.29 deleterious(0.03) benign(0.403) TCGA-W3-AA1V-06 3 39230689 39230689 G T XIRP1 Missense_Mutation p.S83Y 0.57 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 3 39230751 39230751 G A XIRP1 Silent p.H62H 0.24 TCGA-W3-AA1V-06 3 39307132 39307132 G A CX3CR1 Missense_Mutation p.P322L 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 39431046 39431046 C A SLC25A38 Missense_Mutation p.L44I 0.23 tolerated(0.05) probably_damaging(0.951) TCGA-W3-AA1V-06 3 40208658 40208658 A G MYRIP Silent p.Q219Q 0.21 TCGA-W3-AA1V-06 3 40231654 40231654 G A MYRIP Silent p.S455S 0.38 TCGA-W3-AA1V-06 3 40251492 40251492 C T MYRIP Nonsense_Mutation p.Q605* 0.30 TCGA-W3-AA1V-06 3 40468988 40468988 G A ENTPD3 Missense_Mutation p.D527N 0.54 tolerated_low_confidence(0.11) benign(0.085) TCGA-W3-AA1V-06 3 40574060 40574060 G C ZNF621 Missense_Mutation p.E267Q 0.18 deleterious(0.02) benign(0.292) TCGA-W3-AA1V-06 3 40574090 40574090 C T ZNF621 Missense_Mutation p.L277F 0.29 tolerated(0.1) probably_damaging(0.997) TCGA-W3-AA1V-06 3 41275700 41275700 C T CTNNB1 Missense_Mutation p.A532V 0.14 tolerated(0.68) benign(0.013) TCGA-W3-AA1V-06 3 42201895 42201896 - T TRAK1 Intron 0.24 TCGA-W3-AA1V-06 3 42590075 42590075 G A SEC22C 3'Flank 0.27 TCGA-W3-AA1V-06 3 42594826 42594826 G A SEC22C Missense_Mutation p.L276F 0.24 tolerated(0.24) possibly_damaging(0.878) TCGA-W3-AA1V-06 3 42728186 42728186 A T KLHL40 Missense_Mutation p.N359I 0.24 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 3 42733419 42733419 C T KLHL40 Silent p.I600I 0.46 TCGA-W3-AA1V-06 3 42906108 42906108 G A ACKR2 Silent p.K38K 0.28 TCGA-W3-AA1V-06 3 42906838 42906838 G A ACKR2 Missense_Mutation p.G282R 0.23 tolerated(0.89) benign(0.167) TCGA-W3-AA1V-06 3 42949606 42949606 G A ZNF662 Silent p.V61V 0.35 TCGA-W3-AA1V-06 3 42950395 42950395 T A ZNF662 Missense_Mutation p.S109T 0.39 tolerated(0.4) benign(0.007) TCGA-W3-AA1V-06 3 43122747 43122747 G A POMGNT2 Silent p.I59I 0.27 TCGA-W3-AA1V-06 3 43389698 43389698 C T SNRK Silent p.L649L 0.50 TCGA-W3-AA1V-06 3 4354905 4354906 - AA SETMAR Frame_Shift_Ins p.G162Kfs*13 0.39 TCGA-W3-AA1V-06 3 447213 447213 G A CHL1 Missense_Mutation p.R1165Q 0.54 tolerated(0.33) benign(0.126) TCGA-W3-AA1V-06 3 44776689 44776689 C T ZNF501 Missense_Mutation p.S259L 0.16 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-W3-AA1V-06 3 44943190 44943190 G A TGM4 Missense_Mutation p.V278M 0.26 deleterious(0.02) possibly_damaging(0.552) TCGA-W3-AA1V-06 3 44943351 44943351 G A TGM4 Missense_Mutation p.R300K 0.25 tolerated(0.55) benign(0.001) TCGA-W3-AA1V-06 3 44945395 44945395 G A TGM4 Missense_Mutation p.D331N 0.25 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1V-06 3 45000854 45000854 G A ZDHHC3 Silent p.V25V 0.52 TCGA-W3-AA1V-06 3 45151890 45151890 C T CDCP1 Intron 0.30 TCGA-W3-AA1V-06 3 45458985 45458985 C T LARS2 Silent p.P125P 0.25 TCGA-W3-AA1V-06 3 46026370 46026370 C T FYCO1 Silent p.Q11Q 0.40 TCGA-W3-AA1V-06 3 46399923 46399923 C T CCR2 Missense_Mutation p.P302L 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 46477713 46477713 C T LTF Silent p.L702L 0.22 TCGA-W3-AA1V-06 3 46542029 46542029 G A RTP3 Silent p.R113R 0.47 TCGA-W3-AA1V-06 3 46542396 46542396 G A RTP3 3'UTR 0.43 TCGA-W3-AA1V-06 3 46729767 46729767 G A ALS2CL Silent p.P41P 0.57 TCGA-W3-AA1V-06 3 46783882 46783882 G A PRSS45 Silent p.L215L 0.49 TCGA-W3-AA1V-06 3 46935466 46935466 G A PTH1R Missense_Mutation p.E49K 0.38 deleterious(0.04) benign(0.273) TCGA-W3-AA1V-06 3 47041780 47041780 C T NBEAL2 Silent p.P1397P 0.33 TCGA-W3-AA1V-06 3 4709154 4709154 C T ITPR1 Missense_Mutation p.R588W 0.23 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 4726843 4726843 G A ITPR1 Missense_Mutation p.G1204S 0.50 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1V-06 3 47467094 47467094 G A SCAP Silent p.I306I 0.21 TCGA-W3-AA1V-06 3 4748001 4748001 C T ITPR1 Missense_Mutation p.S1588F 0.15 deleterious(0.04) benign(0.406) TCGA-W3-AA1V-06 3 47716983 47716983 G A SMARCC1 Silent p.S607S 0.19 TCGA-W3-AA1V-06 3 47912414 47912414 G A MAP4 Silent p.T916T 0.24 TCGA-W3-AA1V-06 3 47969754 47969754 A G MAP4 Missense_Mutation p.F127L 0.22 deleterious(0.03) possibly_damaging(0.885) TCGA-W3-AA1V-06 3 4816935 4816935 C A ITPR1 Missense_Mutation p.R1982S 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 48265906 48265906 G A CAMP Silent p.R91R 0.17 TCGA-W3-AA1V-06 3 48451758 48451758 G A PLXNB1 Missense_Mutation p.P1851L 0.12 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 3 48454023 48454023 G A PLXNB1 Missense_Mutation p.H1621Y 0.38 deleterious(0.02) benign(0.009) TCGA-W3-AA1V-06 3 48587576 48587576 C T PFKFB4 Silent p.L63L 0.20 TCGA-W3-AA1V-06 3 48626191 48626191 C T COL7A1 Missense_Mutation p.G824E 0.21 unknown(0) TCGA-W3-AA1V-06 3 48626192 48626192 C T COL7A1 Missense_Mutation p.G824R 0.22 unknown(0) TCGA-W3-AA1V-06 3 48636590 48636590 G A UQCRC1 Missense_Mutation p.R472C 0.23 tolerated(0.06) probably_damaging(1) TCGA-W3-AA1V-06 3 48636591 48636591 G A UQCRC1 Silent p.I471I 0.22 TCGA-W3-AA1V-06 3 48669505 48669505 G A SLC26A6 Intron 0.34 TCGA-W3-AA1V-06 3 48699301 48699301 G A CELSR3 Missense_Mutation p.P256L 0.29 tolerated_low_confidence(0.3) benign(0.001) TCGA-W3-AA1V-06 3 48732534 48732534 G A IP6K2 Missense_Mutation p.P64L 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 48956223 48956223 G A ARIH2OS Silent p.V120V 0.28 TCGA-W3-AA1V-06 3 48956240 48956240 G A ARIH2OS Missense_Mutation p.R115W 0.29 tolerated_low_confidence(0.09) benign(0.003) TCGA-W3-AA1V-06 3 49050955 49050955 C T WDR6 Missense_Mutation p.S693F 0.33 tolerated(0.14) possibly_damaging(0.761) TCGA-W3-AA1V-06 3 49160984 49160984 G A LAMB2 Missense_Mutation p.A1293V 0.48 tolerated(0.17) probably_damaging(0.999) TCGA-W3-AA1V-06 3 49162316 49162316 G T LAMB2 Missense_Mutation p.P976Q 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 3 49400051 49400051 G A RHOA Missense_Mutation p.P96S 0.49 tolerated(0.42) benign(0.016) TCGA-W3-AA1V-06 3 49570482 49570482 C T DAG1 Silent p.T846T 0.24 TCGA-W3-AA1V-06 3 49692011 49692011 C T BSN Silent p.P1674P 0.42 TCGA-W3-AA1V-06 3 49692888 49692888 G A BSN Missense_Mutation p.E1967K 0.22 unknown(0) TCGA-W3-AA1V-06 3 49694870 49694870 C T BSN Silent p.R2627R 0.39 TCGA-W3-AA1V-06 3 49698361 49698361 C T BSN Missense_Mutation p.P3028L 0.20 unknown(0) TCGA-W3-AA1V-06 3 49720819 49720819 C T APEH 3'UTR 0.27 TCGA-W3-AA1V-06 3 49755708 49755708 G A AMIGO3 Silent p.L397L 0.48 TCGA-W3-AA1V-06 3 49850750 49850750 G A UBA7 Missense_Mutation p.L98F 0.27 deleterious(0.01) possibly_damaging(0.873) TCGA-W3-AA1V-06 3 49850926 49850926 C T UBA7 Missense_Mutation p.D71N 0.20 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 49897254 49897254 C T CAMKV Missense_Mutation p.A335T 0.59 tolerated(0.16) probably_damaging(0.98) TCGA-W3-AA1V-06 3 50095212 50095212 C T RBM6 Missense_Mutation p.S582F 0.52 tolerated(0.06) possibly_damaging(0.486) TCGA-W3-AA1V-06 3 50229219 50229219 G A GNAT1 Missense_Mutation p.E21K 0.18 tolerated(0.4) benign(0.195) TCGA-W3-AA1V-06 3 5025090 5025090 C T BHLHE40 Nonsense_Mutation p.Q318* 0.53 TCGA-W3-AA1V-06 3 50396192 50396192 G A TMEM115 Silent p.F101F 0.43 TCGA-W3-AA1V-06 3 50416947 50416947 G A CACNA2D2 Silent p.F356F 0.17 TCGA-W3-AA1V-06 3 50421668 50421668 G A CACNA2D2 Missense_Mutation p.S204L 0.22 deleterious(0) probably_damaging(0.917) TCGA-W3-AA1V-06 3 50816124 50816124 G A DOCK3 Missense_Mutation p.G19E 0.21 deleterious(0) benign(0.355) TCGA-W3-AA1V-06 3 51101917 51101917 G A DOCK3 Silent p.V118V 0.51 TCGA-W3-AA1V-06 3 51198024 51198024 C T DOCK3 Missense_Mutation p.H310Y 0.17 deleterious(0.05) benign(0.211) TCGA-W3-AA1V-06 3 51251600 51251600 C T DOCK3 Missense_Mutation p.R392W 0.44 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 51352544 51352544 T C DOCK3 Silent p.N1129N 0.52 TCGA-W3-AA1V-06 3 51378783 51378783 C T DOCK3 Silent p.C1294C 0.30 TCGA-W3-AA1V-06 3 51393619 51393619 A G DOCK3 Missense_Mutation p.N1450S 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-W3-AA1V-06 3 51397992 51397992 C T DOCK3 Silent p.T1645T 0.30 TCGA-W3-AA1V-06 3 51450507 51450507 C T VPRBP Silent p.V921V 0.23 TCGA-W3-AA1V-06 3 51690030 51690030 C T RAD54L2 Missense_Mutation p.R1024C 0.23 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 3 51746908 51746908 C T GRM2 Silent p.T290T 0.24 TCGA-W3-AA1V-06 3 51929293 51929293 G A IQCF1 Silent p.A77A 0.16 TCGA-W3-AA1V-06 3 52084883 52084883 G A DUSP7 Missense_Mutation p.S403F 0.29 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-W3-AA1V-06 3 52109779 52109779 C T POC1A 3'UTR 0.26 TCGA-W3-AA1V-06 3 52263780 52263780 G A TLR9 Missense_Mutation p.P121L 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1V-06 3 52324697 52324697 C T GLYCTK Silent p.P113P 0.10 TCGA-W3-AA1V-06 3 52356680 52356680 G A DNAH1 Silent p.L74L 0.46 TCGA-W3-AA1V-06 3 52356681 52356681 G A DNAH1 Missense_Mutation p.G75R 0.42 benign(0.147) TCGA-W3-AA1V-06 3 52360286 52360286 C T DNAH1 Silent p.F179F 0.22 TCGA-W3-AA1V-06 3 52388981 52388981 C T DNAH1 Silent p.I1201I 0.56 TCGA-W3-AA1V-06 3 52423486 52423486 C T DNAH1 Missense_Mutation p.R3169C 0.44 probably_damaging(1) TCGA-W3-AA1V-06 3 52472948 52472948 G A SEMA3G Silent p.I499I 0.18 TCGA-W3-AA1V-06 3 52485519 52485519 C T TNNC1 Silent p.L114L 0.46 TCGA-W3-AA1V-06 3 52492680 52492680 C T NISCH Silent p.L60L 0.24 TCGA-W3-AA1V-06 3 52512543 52512543 C T NISCH Missense_Mutation p.P418S 0.23 deleterious(0) possibly_damaging(0.833) TCGA-W3-AA1V-06 3 52524233 52524233 C A NISCH Nonsense_Mutation p.S1200* 0.30 TCGA-W3-AA1V-06 3 52546384 52546384 C T STAB1 Nonsense_Mutation p.Q971* 0.32 TCGA-W3-AA1V-06 3 52551568 52551568 C T STAB1 Silent p.V1522V 0.12 TCGA-W3-AA1V-06 3 52955808 52955808 C T SFMBT1 Missense_Mutation p.E391K 0.26 deleterious(0.01) possibly_damaging(0.449) TCGA-W3-AA1V-06 3 52977487 52977487 G A SFMBT1 Silent p.L82L 0.21 TCGA-W3-AA1V-06 3 53263359 53263359 G A TKT Missense_Mutation p.R409C 0.26 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 3 53326490 53326490 A G DCP1A Missense_Mutation p.V331A 0.15 tolerated(0.22) benign(0.004) TCGA-W3-AA1V-06 3 53381598 53381598 G A DCP1A 5'UTR 0.65 TCGA-W3-AA1V-06 3 53760908 53760908 C T CACNA1D Silent p.I721I 0.27 TCGA-W3-AA1V-06 3 53765108 53765108 G A CACNA1D Missense_Mutation p.E801K 0.39 tolerated(0.88) benign(0.079) TCGA-W3-AA1V-06 3 53778781 53778781 C T CACNA1D Missense_Mutation p.S998F 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 3 53785809 53785809 C T CACNA1D Missense_Mutation p.P1204S 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 53834348 53834348 G A CACNA1D Missense_Mutation p.E1686K 0.40 deleterious(0.01) benign(0.077) TCGA-W3-AA1V-06 3 53902843 53902843 G A ACTR8 Missense_Mutation p.A593V 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-W3-AA1V-06 3 54872646 54872646 G A CACNA2D3 Missense_Mutation p.E508K 0.60 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 3 54930827 54930827 C T CACNA2D3 Silent p.F766F 0.24 TCGA-W3-AA1V-06 3 54930861 54930861 C T CACNA2D3 Missense_Mutation p.P778S 0.19 deleterious(0.05) probably_damaging(0.998) TCGA-W3-AA1V-06 3 55021748 55021748 G A CACNA2D3 Missense_Mutation p.M886I 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-W3-AA1V-06 3 55768834 55768834 C T ERC2 Missense_Mutation p.E893K 0.16 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 56044575 56044575 C T ERC2 Missense_Mutation p.D608N 0.43 deleterious(0) possibly_damaging(0.735) TCGA-W3-AA1V-06 3 56183135 56183135 C T ERC2 Missense_Mutation p.R392Q 0.67 deleterious(0.01) probably_damaging(0.909) TCGA-W3-AA1V-06 3 56330352 56330352 C T ERC2 Missense_Mutation p.E257K 0.49 tolerated(0.05) probably_damaging(0.954) TCGA-W3-AA1V-06 3 56655652 56655652 G C CCDC66 3'UTR 0.51 TCGA-W3-AA1V-06 3 56766342 56766342 G A ARHGEF3 Silent p.L416L 0.48 TCGA-W3-AA1V-06 3 58109371 58109371 G A FLNB Silent p.V1226V 0.47 TCGA-W3-AA1V-06 3 58116485 58116485 C T FLNB Missense_Mutation p.P1414S 0.16 tolerated(0.06) possibly_damaging(0.905) TCGA-W3-AA1V-06 3 58191278 58191278 C T DNASE1L3 Silent p.R80R 0.23 TCGA-W3-AA1V-06 3 58253014 58253014 C T ABHD6 Missense_Mutation p.S73F 0.29 deleterious(0) possibly_damaging(0.84) TCGA-W3-AA1V-06 3 64133055 64133055 G A PRICKLE2 Missense_Mutation p.P371S 0.30 tolerated(0.3) possibly_damaging(0.56) TCGA-W3-AA1V-06 3 64589654 64589654 T C ADAMTS9 Missense_Mutation p.K1231E 0.21 tolerated(1) benign(0.008) TCGA-W3-AA1V-06 3 65415488 65415488 G A MAGI1 Missense_Mutation p.P625L 0.55 deleterious(0.03) possibly_damaging(0.511) TCGA-W3-AA1V-06 3 66460603 66460603 G A LRIG1 Silent p.I295I 0.25 TCGA-W3-AA1V-06 3 68588021 68588021 A G FAM19A1 Missense_Mutation p.K125R 0.14 deleterious(0.03) probably_damaging(0.989) TCGA-W3-AA1V-06 3 68588028 68588028 G A FAM19A1 Silent p.T127T 0.12 TCGA-W3-AA1V-06 3 68593678 68593678 G A FAM19A1 3'UTR 0.32 TCGA-W3-AA1V-06 3 68788340 68788340 C T FAM19A4 Silent p.V99V 0.32 TCGA-W3-AA1V-06 3 69167932 69167932 C T LMOD3 Missense_Mutation p.R525K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1V-06 3 69169130 69169130 C T LMOD3 Missense_Mutation p.E126K 0.44 tolerated(0.21) possibly_damaging(0.478) TCGA-W3-AA1V-06 3 71026847 71026847 A G FOXP1 Missense_Mutation p.Y461H 0.48 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 3 71821857 71821857 G A PROK2 3'UTR 0.47 TCGA-W3-AA1V-06 3 7348231 7348231 C T GRM7 Missense_Mutation p.L309F 0.22 tolerated(0.15) benign(0.025) TCGA-W3-AA1V-06 3 7620599 7620599 G A GRM7 Missense_Mutation p.S669N 0.57 tolerated(0.09) probably_damaging(0.994) TCGA-W3-AA1V-06 3 77637913 77637913 G A ROBO2 Missense_Mutation p.E854K 0.31 tolerated(0.29) benign(0.292) TCGA-W3-AA1V-06 3 77657042 77657042 C T ROBO2 Missense_Mutation p.P1093L 0.28 deleterious(0.03) possibly_damaging(0.713) TCGA-W3-AA1V-06 3 77657043 77657043 C T ROBO2 Silent p.P1093P 0.28 TCGA-W3-AA1V-06 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.42 TCGA-W3-AA1V-06 3 87027940 87027940 C A VGLL3 Missense_Mutation p.V47L 0.37 tolerated(0.11) benign(0.006) TCGA-W3-AA1V-06 3 87027941 87027941 C T VGLL3 Silent p.A46A 0.37 TCGA-W3-AA1V-06 3 88040328 88040328 G A HTR1F Missense_Mutation p.M143I 0.31 deleterious(0.01) benign(0.4) TCGA-W3-AA1V-06 3 88205516 88205516 C T C3orf38 Missense_Mutation p.H241Y 0.34 deleterious(0.03) benign(0.258) TCGA-W3-AA1V-06 3 89259629 89259629 C T EPHA3 Missense_Mutation p.S258F 0.27 tolerated(0.08) benign(0.02) TCGA-W3-AA1V-06 3 89468467 89468467 C T EPHA3 Silent p.F667F 0.24 TCGA-W3-AA1V-06 3 89499479 89499479 G A EPHA3 Silent p.R883R 0.33 TCGA-W3-AA1V-06 3 9055036 9055036 C T SRGAP3 Silent p.E701E 0.20 TCGA-W3-AA1V-06 3 9055429 9055429 G A SRGAP3 Silent p.F637F 0.23 TCGA-W3-AA1V-06 3 93646220 93646220 C G PROS1 Silent p.L36L 0.28 TCGA-W3-AA1V-06 3 95374317 95374317 C T MTHFD2P1 RNA 0.17 TCGA-W3-AA1V-06 3 9547852 9547852 C T LHFPL4 Missense_Mutation p.D148N 0.17 tolerated(0.07) benign(0.021) TCGA-W3-AA1V-06 3 96706177 96706177 G A EPHA6 Missense_Mutation p.D152N 0.15 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 3 96706323 96706323 C T EPHA6 Silent p.F200F 0.17 TCGA-W3-AA1V-06 3 97329650 97329650 G A EPHA6 Missense_Mutation p.M842I 0.13 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 3 97598837 97598837 C T CRYBG3 Silent p.I351I 0.33 TCGA-W3-AA1V-06 3 97611821 97611821 C T CRYBG3 Missense_Mutation p.R572C 0.45 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 3 97806481 97806481 C T OR5AC2 Silent p.F155F 0.39 TCGA-W3-AA1V-06 3 97851845 97851845 T A OR5H1 Missense_Mutation p.F102I 0.30 deleterious(0) possibly_damaging(0.616) TCGA-W3-AA1V-06 3 97868982 97868982 C T OR5H14 Silent p.Y251Y 0.33 TCGA-W3-AA1V-06 3 97888202 97888202 T G OR5H15 Missense_Mutation p.F220C 0.17 tolerated(0.58) benign(0.014) TCGA-W3-AA1V-06 3 9798712 9798712 C T OGG1 Intron 0.58 TCGA-W3-AA1V-06 3 98073151 98073151 G A OR5K4 Missense_Mutation p.G152R 0.32 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 3 98189104 98189104 G A OR5K1 Missense_Mutation p.M228I 0.41 tolerated(0.08) probably_damaging(0.985) TCGA-W3-AA1V-06 3 98216544 98216544 C T OR5K2 Missense_Mutation p.T7I 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-W3-AA1V-06 3 9934757 9934757 T C JAGN1 Missense_Mutation p.L83S 0.28 deleterious(0) benign(0.227) TCGA-W3-AA1V-06 3 99513936 99513936 C T COL8A1 Silent p.I397I 0.36 TCGA-W3-AA1V-06 3 99513937 99513937 C T COL8A1 Missense_Mutation p.P398S 0.36 deleterious(0.03) unknown(0) TCGA-W3-AA1V-06 4 100232028 100232028 C A ADH1B Missense_Mutation p.V333L 0.24 deleterious(0) benign(0.152) TCGA-W3-AA1V-06 4 100232059 100232059 G A ADH1B Silent p.G322G 0.35 TCGA-W3-AA1V-06 4 100232689 100232689 G A ADH1B Missense_Mutation p.A318V 0.33 tolerated(0.11) possibly_damaging(0.626) TCGA-W3-AA1V-06 4 100264210 100264210 G A ADH1C Silent p.V190V 0.24 TCGA-W3-AA1V-06 4 100528068 100528068 T A MTTP Missense_Mutation p.L503Q 0.26 deleterious(0.02) possibly_damaging(0.908) TCGA-W3-AA1V-06 4 101109121 101109121 C T DDIT4L Missense_Mutation p.E99K 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 102984231 102984231 G A BANK1 Splice_Site p.X717_splice 0.41 TCGA-W3-AA1V-06 4 104061505 104061505 C T CENPE Missense_Mutation p.D1941N 0.27 benign(0.13) TCGA-W3-AA1V-06 4 104510809 104510809 C T TACR3 3'UTR 0.32 TCGA-W3-AA1V-06 4 104640794 104640794 C T TACR3 Silent p.G13G 0.17 TCGA-W3-AA1V-06 4 106880262 106880262 G A NPNT Missense_Mutation p.E472K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 4 107845320 107845320 C T DKK2 Missense_Mutation p.E191K 0.36 tolerated(0.11) possibly_damaging(0.453) TCGA-W3-AA1V-06 4 109740456 109740456 C T COL25A1 Silent p.G625G 0.33 TCGA-W3-AA1V-06 4 110606494 110606494 T A CCDC109B Missense_Mutation p.Y302N 0.48 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 4 110687829 110687829 T A CFI Missense_Mutation p.N70I 0.27 deleterious(0) benign(0.133) TCGA-W3-AA1V-06 4 110791650 110791650 C T LRIT3 Missense_Mutation p.S582F 0.35 tolerated(0.69) benign(0.001) TCGA-W3-AA1V-06 4 110834459 110834459 G A EGF 5'UTR 0.45 TCGA-W3-AA1V-06 4 111470695 111470695 C T ENPEP Missense_Mutation p.S746F 0.42 deleterious(0.01) possibly_damaging(0.516) TCGA-W3-AA1V-06 4 111539766 111539766 C T PITX2 Missense_Mutation p.G164R 0.35 tolerated(0.06) probably_damaging(0.984) TCGA-W3-AA1V-06 4 114199005 114199005 C T ANK2 Missense_Mutation p.P566S 0.24 probably_damaging(1) TCGA-W3-AA1V-06 4 114279237 114279237 G A ANK2 Missense_Mutation p.D3155N 0.44 benign(0.06) TCGA-W3-AA1V-06 4 115767080 115767080 G A NDST4 Missense_Mutation p.H672Y 0.42 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1V-06 4 115998251 115998251 G A NDST4 5'UTR 0.38 TCGA-W3-AA1V-06 4 118005747 118005747 G A TRAM1L1 Missense_Mutation p.S268F 0.31 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1V-06 4 119239566 119239566 C T PRSS12 Missense_Mutation p.E373K 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1V-06 4 119256799 119256799 C T PRSS12 Missense_Mutation p.G217R 0.39 tolerated(0.08) benign(0.337) TCGA-W3-AA1V-06 4 119810280 119810280 C T SYNPO2 Missense_Mutation p.P30L 0.34 deleterious(0) probably_damaging(0.924) TCGA-W3-AA1V-06 4 121961196 121961196 C T NDNF Missense_Mutation p.V68I 0.13 deleterious(0.05) possibly_damaging(0.505) TCGA-W3-AA1V-06 4 122831495 122831495 C T TRPC3 Missense_Mutation p.E536K 0.40 tolerated(0.12) possibly_damaging(0.61) TCGA-W3-AA1V-06 4 123117937 123117937 C T KIAA1109 Silent p.T400T 0.32 TCGA-W3-AA1V-06 4 123122172 123122172 C T KIAA1109 Silent p.I463I 0.29 TCGA-W3-AA1V-06 4 125591367 125591367 T A ANKRD50 Missense_Mutation p.Q1022L 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-W3-AA1V-06 4 126241933 126241933 C T FAT4 Missense_Mutation p.S1456F 0.25 possibly_damaging(0.56) TCGA-W3-AA1V-06 4 126329844 126329844 G A FAT4 Missense_Mutation p.D1939N 0.28 probably_damaging(0.999) TCGA-W3-AA1V-06 4 126355399 126355399 G A FAT4 Splice_Site p.X2340_splice 0.29 TCGA-W3-AA1V-06 4 126367592 126367592 T G FAT4 Silent p.L2446L 0.38 TCGA-W3-AA1V-06 4 126369980 126369980 C T FAT4 Silent p.I2603I 0.50 TCGA-W3-AA1V-06 4 126412418 126412418 C T FAT4 Missense_Mutation p.S4814F 0.39 probably_damaging(0.994) TCGA-W3-AA1V-06 4 128859986 128859986 G A MFSD8 Missense_Mutation p.R236C 0.29 deleterious(0.02) benign(0.052) TCGA-W3-AA1V-06 4 130030793 130030793 C T C4orf33 Nonsense_Mutation p.Q154* 0.29 TCGA-W3-AA1V-06 4 1326645 1326645 C T MAEA Missense_Mutation p.P253S 0.33 deleterious(0.03) benign(0.392) TCGA-W3-AA1V-06 4 13339759 13339759 G A HSP90AB2P RNA 0.40 TCGA-W3-AA1V-06 4 13601087 13601087 C T BOD1L1 Silent p.G2479G 0.32 TCGA-W3-AA1V-06 4 13603059 13603059 G A BOD1L1 Missense_Mutation p.S1822L 0.41 possibly_damaging(0.656) TCGA-W3-AA1V-06 4 13606356 13606356 G A BOD1L1 Missense_Mutation p.S723F 0.30 benign(0.086) TCGA-W3-AA1V-06 4 138449914 138449914 G A PCDH18 Nonsense_Mutation p.R850* 0.39 TCGA-W3-AA1V-06 4 138452122 138452122 G A PCDH18 Missense_Mutation p.P374L 0.43 deleterious(0) probably_damaging(0.936) TCGA-W3-AA1V-06 4 138452163 138452163 G A PCDH18 Silent p.S360S 0.39 TCGA-W3-AA1V-06 4 138452212 138452212 A G PCDH18 Missense_Mutation p.V344A 0.30 deleterious(0) possibly_damaging(0.73) TCGA-W3-AA1V-06 4 142641711 142641711 C T IL15 Silent p.F34F 0.29 TCGA-W3-AA1V-06 4 144336831 144336831 C T GAB1 Missense_Mutation p.R92W 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 144826672 144826672 G A GYPE 5'UTR 0.29 TCGA-W3-AA1V-06 4 145038046 145038046 C T GYPA Silent p.T106T 0.33 TCGA-W3-AA1V-06 4 146567161 146567161 C T MMAA Nonsense_Mutation p.R196* 0.26 TCGA-W3-AA1V-06 4 146770644 146770644 G A ZNF827 Missense_Mutation p.S684F 0.40 deleterious(0.04) benign(0.431) TCGA-W3-AA1V-06 4 146823459 146823459 G A ZNF827 Missense_Mutation p.P318S 0.31 tolerated_low_confidence(0.2) benign(0.002) TCGA-W3-AA1V-06 4 146824280 146824280 G A ZNF827 Missense_Mutation p.S44F 0.35 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 4 147179900 147179900 G A SLC10A7 Missense_Mutation p.L313F 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-W3-AA1V-06 4 148406974 148406974 C T EDNRA Silent p.F47F 0.48 TCGA-W3-AA1V-06 4 149356689 149356689 T C NR3C2 Missense_Mutation p.K442E 0.37 tolerated_low_confidence(0.27) possibly_damaging(0.636) TCGA-W3-AA1V-06 4 154707041 154707041 C T SFRP2 Missense_Mutation p.M186I 0.39 tolerated(0.27) benign(0.003) TCGA-W3-AA1V-06 4 154942 154942 C T ZNF718 RNA 0.38 TCGA-W3-AA1V-06 4 155156953 155156953 C T DCHS2 Missense_Mutation p.E2496K 0.34 tolerated(0.1) benign(0.007) TCGA-W3-AA1V-06 4 155157066 155157066 C T DCHS2 Missense_Mutation p.G2458E 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 155219666 155219666 G A DCHS2 Missense_Mutation p.P1479S 0.30 tolerated(0.5) benign(0.015) TCGA-W3-AA1V-06 4 155226328 155226328 G A DCHS2 Silent p.F1317F 0.37 TCGA-W3-AA1V-06 4 155243599 155243599 C T DCHS2 Missense_Mutation p.E899K 0.31 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 4 155507784 155507784 C T FGA Missense_Mutation p.G266E 0.33 tolerated(0.94) benign(0.004) TCGA-W3-AA1V-06 4 155533543 155533543 G A FGG Silent p.F41F 0.38 TCGA-W3-AA1V-06 4 155720323 155720323 G A RBM46 Missense_Mutation p.E337K 0.45 tolerated(0.18) benign(0.006) TCGA-W3-AA1V-06 4 156135876 156135876 G A NPY2R Missense_Mutation p.R262Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 4 156278616 156278616 G A MAP9 Missense_Mutation p.S369F 0.32 deleterious(0) probably_damaging(0.946) TCGA-W3-AA1V-06 4 156289796 156289796 G A MAP9 Missense_Mutation p.P217L 0.38 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 4 156651249 156651249 C T GUCY1A3 Missense_Mutation p.P647S 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 158065089 158065089 G A GLRB Silent p.A294A 0.25 TCGA-W3-AA1V-06 4 158284078 158284078 G A GRIA2 Missense_Mutation p.R845Q 0.25 deleterious(0.03) possibly_damaging(0.723) TCGA-W3-AA1V-06 4 15937433 15937433 C T FGFBP1 3'UTR 0.38 TCGA-W3-AA1V-06 4 159526243 159526243 G A RXFP1 Missense_Mutation p.R139K 0.30 tolerated(0.19) benign(0.002) TCGA-W3-AA1V-06 4 159590913 159590913 A T C4orf46 Missense_Mutation p.F65Y 0.24 deleterious_low_confidence(0.02) probably_damaging(0.916) TCGA-W3-AA1V-06 4 16168369 16168369 G A TAPT1 Missense_Mutation p.S454L 0.32 deleterious(0) possibly_damaging(0.623) TCGA-W3-AA1V-06 4 164534616 164534616 C T MARCH1 Intron 0.28 TCGA-W3-AA1V-06 4 16504282 16504282 G A LDB2 Missense_Mutation p.P369L 0.31 tolerated_low_confidence(0.07) benign(0.062) TCGA-W3-AA1V-06 4 165962385 165962385 A G TRIM60 Silent p.A387A 0.27 TCGA-W3-AA1V-06 4 165962504 165962504 C T TRIM60 Missense_Mutation p.S427F 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 166405632 166405632 G A CPE Silent p.R283R 0.34 TCGA-W3-AA1V-06 4 167012279 167012279 G A TLL1 Splice_Site p.X815_splice 0.44 TCGA-W3-AA1V-06 4 167658647 167658647 C T SPOCK3 Missense_Mutation p.G371E 0.34 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 4 168155165 168155165 C T SPOCK3 Missense_Mutation p.E54K 0.23 tolerated(1) benign(0.298) TCGA-W3-AA1V-06 4 169167629 169167629 C T DDX60 Silent p.L1368L 0.39 TCGA-W3-AA1V-06 4 169167646 169167646 G A DDX60 Missense_Mutation p.P1363S 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 169195117 169195117 C T DDX60 Missense_Mutation p.D808N 0.34 deleterious(0.02) benign(0.159) TCGA-W3-AA1V-06 4 169214938 169214938 C T DDX60 Silent p.Q294Q 0.22 TCGA-W3-AA1V-06 4 169317203 169317203 G A DDX60L Silent p.F1188F 0.40 TCGA-W3-AA1V-06 4 169348333 169348333 C T DDX60L Silent p.R606R 0.25 TCGA-W3-AA1V-06 4 1730378 1730378 C T TACC3 Missense_Mutation p.P417S 0.37 deleterious(0.05) benign(0.321) TCGA-W3-AA1V-06 4 175220323 175220323 C T CEP44 Silent p.L17L 0.60 TCGA-W3-AA1V-06 4 175598289 175598289 C T GLRA3 Silent p.G289G 0.52 TCGA-W3-AA1V-06 4 175897554 175897554 G A ADAM29 Missense_Mutation p.G293E 0.57 tolerated(1) benign(0.036) TCGA-W3-AA1V-06 4 175899004 175899004 G A ADAM29 Silent p.Q776Q 0.52 TCGA-W3-AA1V-06 4 177609008 177609008 C T VEGFC Missense_Mutation p.E260K 0.70 tolerated(0.58) benign(0.03) TCGA-W3-AA1V-06 4 178281700 178281700 C T NEIL3 Missense_Mutation p.P502S 0.79 tolerated(0.28) benign(0.002) TCGA-W3-AA1V-06 4 1801483 1801483 C T FGFR3 Missense_Mutation p.S130F 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-W3-AA1V-06 4 1843455 1843455 G A LETM1 Silent p.G71G 0.50 TCGA-W3-AA1V-06 4 187004571 187004571 C T TLR3 Silent p.I577I 0.54 TCGA-W3-AA1V-06 4 187177230 187177230 C T KLKB1 Missense_Mutation p.S525L 0.50 tolerated(0.07) benign(0.157) TCGA-W3-AA1V-06 4 187195360 187195360 G A F11 Missense_Mutation p.R139K 0.53 tolerated(0.41) benign(0.137) TCGA-W3-AA1V-06 4 187197517 187197517 C T F11 Missense_Mutation p.S243F 0.50 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 4 187455575 187455575 C T MTNR1A Missense_Mutation p.M107I 0.21 deleterious(0.04) benign(0.058) TCGA-W3-AA1V-06 4 189012614 189012614 G A TRIML2 Silent p.S359S 0.57 TCGA-W3-AA1V-06 4 189061083 189061083 G A TRIML1 Missense_Mutation p.R124K 0.36 tolerated(0.25) benign(0.015) TCGA-W3-AA1V-06 4 1920235 1920235 G A WHSC1 Missense_Mutation p.R432K 0.44 tolerated(0.89) benign(0.001) TCGA-W3-AA1V-06 4 20547665 20547665 G A SLIT2 Missense_Mutation p.G763E 0.19 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 4 20598061 20598061 C T SLIT2 Missense_Mutation p.P1115L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 4 2130985 2130985 T A POLN Splice_Site p.X597_splice 0.25 TCGA-W3-AA1V-06 4 22440041 22440041 G A GPR125 Missense_Mutation p.A308V 0.27 tolerated(0.07) possibly_damaging(0.741) TCGA-W3-AA1V-06 4 22748924 22748924 G A GBA3 Missense_Mutation p.D98N 0.30 tolerated(0.12) benign(0.018) TCGA-W3-AA1V-06 4 24578065 24578065 G A DHX15 Missense_Mutation p.A103V 0.31 tolerated(0.15) benign(0.002) TCGA-W3-AA1V-06 4 25278680 25278680 C T PI4K2B Silent p.F439F 0.39 TCGA-W3-AA1V-06 4 25673267 25673267 C T SLC34A2 Silent p.S324S 0.35 TCGA-W3-AA1V-06 4 25675930 25675930 C T SLC34A2 Missense_Mutation p.P410L 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 4 26483611 26483611 G A CCKAR Silent p.I312I 0.35 TCGA-W3-AA1V-06 4 2701434 2701434 G A FAM193A Missense_Mutation p.E888K 0.38 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1V-06 4 3029679 3029679 C T GRK4 Silent p.I337I 0.42 TCGA-W3-AA1V-06 4 30921781 30921781 C T PCDH7 Missense_Mutation p.R1061C 0.13 deleterious(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 4 3444461 3444461 C T HGFAC Silent p.N40N 0.24 TCGA-W3-AA1V-06 4 37903911 37903911 G A TBC1D1 Silent p.R65R 0.41 TCGA-W3-AA1V-06 4 38690351 38690351 A G KLF3 Missense_Mutation p.K68R 0.55 deleterious(0) probably_damaging(0.956) TCGA-W3-AA1V-06 4 38829085 38829085 C T TLR6 Silent p.Q670Q 0.26 TCGA-W3-AA1V-06 4 38829295 38829295 C T TLR6 Silent p.V600V 0.21 TCGA-W3-AA1V-06 4 39077748 39077748 C T KLHL5 Missense_Mutation p.R229C 0.22 tolerated(0.06) probably_damaging(0.95) TCGA-W3-AA1V-06 4 39293403 39293403 G A RFC1 Silent p.P1009P 0.24 TCGA-W3-AA1V-06 4 39436053 39436053 C T KLB Missense_Mutation p.S350F 0.33 tolerated(0.1) benign(0.033) TCGA-W3-AA1V-06 4 39439585 39439585 C T KLB Silent p.F525F 0.42 TCGA-W3-AA1V-06 4 3952896 3952896 G A FAM86EP Intron 0.34 TCGA-W3-AA1V-06 4 39839698 39839698 G A PDS5A Missense_Mutation p.P1263L 0.57 deleterious_low_confidence(0.01) benign(0.029) TCGA-W3-AA1V-06 4 40439832 40439832 G A RBM47 Missense_Mutation p.P360L 0.43 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 4 40776320 40776320 G A NSUN7 Missense_Mutation p.R176Q 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 41263780 41263780 C T UCHL1 Missense_Mutation p.S125F 0.24 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 4 41526485 41526485 T G LIMCH1 Missense_Mutation p.I76S 0.23 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 4 41750657 41750657 G A PHOX2B 5'UTR 0.44 TCGA-W3-AA1V-06 4 41984137 41984137 C T DCAF4L1 Missense_Mutation p.P110S 0.33 tolerated(0.14) benign(0.269) TCGA-W3-AA1V-06 4 4199322 4199322 G A OTOP1 Silent p.L413L 0.18 TCGA-W3-AA1V-06 4 42145922 42145922 G A BEND4 Missense_Mutation p.H193Y 0.25 tolerated_low_confidence(0.08) benign(0.221) TCGA-W3-AA1V-06 4 42965096 42965096 G A GRXCR1 Missense_Mutation p.R191Q 0.33 tolerated(0.25) possibly_damaging(0.659) TCGA-W3-AA1V-06 4 44176686 44176686 C T KCTD8 3'UTR 0.45 TCGA-W3-AA1V-06 4 46099335 46099335 C T GABRG1 Missense_Mutation p.D46N 0.34 tolerated(0.08) probably_damaging(0.984) TCGA-W3-AA1V-06 4 46252351 46252351 C T GABRA2 Missense_Mutation p.E444K 0.38 tolerated(0.08) benign(0.076) TCGA-W3-AA1V-06 4 46252405 46252405 G A GABRA2 Missense_Mutation p.P426S 0.45 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 4 46252429 46252429 C T GABRA2 Missense_Mutation p.D418N 0.27 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 4 46967124 46967124 C T GABRA4 Missense_Mutation p.A333T 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 47405631 47405631 C T GABRB1 Silent p.F246F 0.42 TCGA-W3-AA1V-06 4 47514538 47514538 G A ATP10D 5'UTR 0.36 TCGA-W3-AA1V-06 4 47538736 47538736 G A ATP10D Missense_Mutation p.E393K 0.40 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 4 47938850 47938850 C T CNGA1 Missense_Mutation p.G623E 0.34 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 4 48906603 48906603 C T OCIAD2 5'UTR 0.30 TCGA-W3-AA1V-06 4 52926959 52926959 G A SPATA18 Missense_Mutation p.D69N 0.16 tolerated(0.38) benign(0.418) TCGA-W3-AA1V-06 4 52938181 52938181 G A SPATA18 Missense_Mutation p.R206Q 0.15 tolerated(0.1) benign(0.001) TCGA-W3-AA1V-06 4 52942965 52942965 C T SPATA18 Missense_Mutation p.P260L 0.16 tolerated(0.06) benign(0.01) TCGA-W3-AA1V-06 4 52943020 52943020 C T SPATA18 Silent p.S278S 0.55 TCGA-W3-AA1V-06 4 53296 53296 G A ZNF595 5'UTR 0.18 TCGA-W3-AA1V-06 4 55144642 55144642 G A PDGFRA Missense_Mutation p.D706N 0.37 tolerated(0.23) possibly_damaging(0.734) TCGA-W3-AA1V-06 4 55964351 55964351 G A KDR Missense_Mutation p.P821L 0.12 deleterious(0) possibly_damaging(0.496) TCGA-W3-AA1V-06 4 55984850 55984850 C T KDR Silent p.V93V 0.23 TCGA-W3-AA1V-06 4 56466727 56466727 G A NMU Missense_Mutation p.P151S 0.48 deleterious(0.01) possibly_damaging(0.778) TCGA-W3-AA1V-06 4 56759755 56759755 C T EXOC1 Missense_Mutation p.R588C 0.19 tolerated(0.06) possibly_damaging(0.809) TCGA-W3-AA1V-06 4 5690977 5690977 A G EVC2 Silent p.L205L 0.29 TCGA-W3-AA1V-06 4 57190270 57190270 G T KIAA1211 Missense_Mutation p.V1127F 0.55 deleterious(0.01) possibly_damaging(0.607) TCGA-W3-AA1V-06 4 57190272 57190272 C T KIAA1211 Silent p.V1127V 0.56 TCGA-W3-AA1V-06 4 57269257 57269257 G A PPAT Missense_Mutation p.R204C 0.17 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 57860607 57860607 C T POLR2B Missense_Mutation p.S94F 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1V-06 4 5857975 5857975 C T CRMP1 Missense_Mutation p.E239K 0.60 tolerated(0.13) probably_damaging(0.997) TCGA-W3-AA1V-06 4 6062228 6062228 C T JAKMIP1 Missense_Mutation p.E523K 0.36 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 4 62758456 62758456 G A LPHN3 Silent p.R453R 0.25 TCGA-W3-AA1V-06 4 6296833 6296833 C T WFS1 Missense_Mutation p.P260S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 4 6296834 6296834 C T WFS1 Missense_Mutation p.P260L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 4 680339 680339 G A MFSD7 Silent p.S92S 0.22 TCGA-W3-AA1V-06 4 68424461 68424461 C T STAP1 5'UTR 0.14 TCGA-W3-AA1V-06 4 6864012 6864012 T C KIAA0232 Missense_Mutation p.F635L 0.41 tolerated(0.11) probably_damaging(0.997) TCGA-W3-AA1V-06 4 6865434 6865434 C T KIAA0232 Missense_Mutation p.R1109C 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 4 68930597 68930597 C T TMPRSS11F Missense_Mutation p.R274Q 0.46 tolerated(0.13) possibly_damaging(0.528) TCGA-W3-AA1V-06 4 69334611 69334611 T C TMPRSS11E Silent p.F91F 0.21 TCGA-W3-AA1V-06 4 69434027 69434027 G A UGT2B17 Missense_Mutation p.S59L 0.23 deleterious(0.01) possibly_damaging(0.693) TCGA-W3-AA1V-06 4 69434068 69434068 C T UGT2B17 Silent p.E45E 0.30 TCGA-W3-AA1V-06 4 69512943 69512943 G A UGT2B15 Missense_Mutation p.S491F 0.26 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 4 69536005 69536005 G A UGT2B15 Missense_Mutation p.S111L 0.21 tolerated(0.69) benign(0.139) TCGA-W3-AA1V-06 4 70156372 70156372 T G UGT2B28 Missense_Mutation p.Y385D 0.25 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 4 70160345 70160345 C T UGT2B28 Missense_Mutation p.H470Y 0.18 deleterious(0.02) possibly_damaging(0.58) TCGA-W3-AA1V-06 4 70351076 70351076 C T UGT2B4 Missense_Mutation p.G387E 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 70361039 70361039 C T UGT2B4 Missense_Mutation p.E181K 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-W3-AA1V-06 4 70361535 70361535 G A UGT2B4 Silent p.S15S 0.34 TCGA-W3-AA1V-06 4 7055826 7055826 C T TADA2B Missense_Mutation p.P103L 0.23 deleterious(0.01) possibly_damaging(0.69) TCGA-W3-AA1V-06 4 70826699 70826699 G A CSN2 Silent p.I5I 0.53 TCGA-W3-AA1V-06 4 71114825 71114825 A T CSN3 Missense_Mutation p.R66S 0.21 deleterious(0) possibly_damaging(0.537) TCGA-W3-AA1V-06 4 71232685 71232685 C T SMR3A Missense_Mutation p.P127S 0.34 tolerated_low_confidence(0.12) unknown(0) TCGA-W3-AA1V-06 4 71508128 71508128 C T ENAM Missense_Mutation p.P329S 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 71509654 71509654 G A ENAM Silent p.R837R 0.18 TCGA-W3-AA1V-06 4 72397797 72397797 G A SLC4A4 Missense_Mutation p.D729N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 4 72629190 72629190 G A GC Silent p.L231L 0.13 TCGA-W3-AA1V-06 4 73414203 73414203 C T ADAMTS3 Missense_Mutation p.D166N 0.26 tolerated(0.08) possibly_damaging(0.612) TCGA-W3-AA1V-06 4 73414542 73414542 C T ADAMTS3 Missense_Mutation p.E53K 0.35 tolerated(0.18) benign(0.014) TCGA-W3-AA1V-06 4 74274494 74274494 C T ALB Missense_Mutation p.H152Y 0.36 deleterious(0) benign(0.204) TCGA-W3-AA1V-06 4 7435569 7435569 G A PSAPL1 Silent p.S346S 0.40 TCGA-W3-AA1V-06 4 7436357 7436357 C T PSAPL1 Missense_Mutation p.E84K 0.44 deleterious(0) possibly_damaging(0.635) TCGA-W3-AA1V-06 4 75250478 75250478 G A EREG Missense_Mutation p.E155K 0.22 tolerated(0.06) possibly_damaging(0.533) TCGA-W3-AA1V-06 4 75937662 75937662 C T PARM1 Missense_Mutation p.S24L 0.29 deleterious(0) benign(0.372) TCGA-W3-AA1V-06 4 75937836 75937836 C T PARM1 Missense_Mutation p.S82F 0.26 deleterious(0) possibly_damaging(0.882) TCGA-W3-AA1V-06 4 76794337 76794337 G A PPEF2 Silent p.F483F 0.31 TCGA-W3-AA1V-06 4 76877230 76877230 G A SDAD1 Silent p.S638S 0.36 TCGA-W3-AA1V-06 4 76924830 76924830 T G CXCL9 Missense_Mutation p.K100T 0.36 deleterious(0.01) unknown(0) TCGA-W3-AA1V-06 4 77231128 77231128 T C FAM47E-STBD1 Missense_Mutation p.V351A 0.28 tolerated(0.15) probably_damaging(0.999) TCGA-W3-AA1V-06 4 77288781 77288781 G A CCDC158 Missense_Mutation p.S499L 0.34 deleterious(0) probably_damaging(0.975) TCGA-W3-AA1V-06 4 77290713 77290713 C T CCDC158 Missense_Mutation p.D405N 0.48 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1V-06 4 77631357 77631357 C T SHROOM3 Silent p.F124F 0.34 TCGA-W3-AA1V-06 4 77660165 77660165 G A SHROOM3 Missense_Mutation p.R280Q 0.28 tolerated(0.21) benign(0.022) TCGA-W3-AA1V-06 4 77660166 77660166 G A SHROOM3 Silent p.R280R 0.28 TCGA-W3-AA1V-06 4 77660445 77660445 G A SHROOM3 Silent p.T373T 0.23 TCGA-W3-AA1V-06 4 77660446 77660446 G A SHROOM3 Missense_Mutation p.D374N 0.24 tolerated(0.09) benign(0.048) TCGA-W3-AA1V-06 4 77675873 77675873 G A SHROOM3 Missense_Mutation p.E1413K 0.30 tolerated(0.07) benign(0.063) TCGA-W3-AA1V-06 4 79462083 79462083 G A FRAS1 Silent p.L3948L 0.40 TCGA-W3-AA1V-06 4 80246762 80246762 C T NAA11 Silent p.L90L 0.55 TCGA-W3-AA1V-06 4 80328238 80328238 C T GK2 Missense_Mutation p.E373K 0.37 tolerated(0.16) benign(0.062) TCGA-W3-AA1V-06 4 80329368 80329368 C T GK2 5'UTR 0.19 TCGA-W3-AA1V-06 4 81207630 81207630 C T FGF5 Missense_Mutation p.P204L 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 81256953 81256953 G A C4orf22 Missense_Mutation p.D11N 0.31 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1V-06 4 81791188 81791188 G A C4orf22 Silent p.E142E 0.37 TCGA-W3-AA1V-06 4 81791253 81791253 G A C4orf22 Missense_Mutation p.G164E 0.41 tolerated(0.21) benign(0.273) TCGA-W3-AA1V-06 4 81952508 81952508 A C BMP3 Silent p.R24R 0.56 TCGA-W3-AA1V-06 4 81966994 81966994 G A BMP3 Missense_Mutation p.G140E 0.28 tolerated(0.63) benign(0) TCGA-W3-AA1V-06 4 81967491 81967491 G A BMP3 Missense_Mutation p.E306K 0.33 tolerated(0.11) possibly_damaging(0.831) TCGA-W3-AA1V-06 4 81974555 81974555 C T BMP3 Silent p.V428V 0.36 TCGA-W3-AA1V-06 4 81974669 81974669 A T BMP3 Silent p.V466V 0.40 TCGA-W3-AA1V-06 4 82125970 82125970 G A PRKG2 Nonsense_Mutation p.Q78* 0.25 TCGA-W3-AA1V-06 4 82126046 82126046 C T PRKG2 Silent p.K52K 0.31 TCGA-W3-AA1V-06 4 82368724 82368724 G A RASGEF1B Silent p.L221L 0.49 TCGA-W3-AA1V-06 4 82377897 82377897 C T RASGEF1B Missense_Mutation p.E116K 0.45 deleterious(0.04) benign(0.057) TCGA-W3-AA1V-06 4 8295864 8295864 C T HTRA3 Silent p.S329S 0.31 TCGA-W3-AA1V-06 4 83350589 83350589 G A HNRNPDL Silent p.L85L 0.45 TCGA-W3-AA1V-06 4 8411952 8411952 G A ACOX3 Missense_Mutation p.P225L 0.32 deleterious(0.04) benign(0.011) TCGA-W3-AA1V-06 4 8411953 8411953 G A ACOX3 Missense_Mutation p.P225S 0.32 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 4 84227447 84227447 G A HPSE Missense_Mutation p.S372L 0.36 tolerated(0.31) benign(0.013) TCGA-W3-AA1V-06 4 84230104 84230104 C T HPSE Missense_Mutation p.V329M 0.17 deleterious(0.04) possibly_damaging(0.515) TCGA-W3-AA1V-06 4 84240600 84240600 G A HPSE Silent p.I132I 0.32 TCGA-W3-AA1V-06 4 8465775 8465775 C T TRMT44 Missense_Mutation p.H423Y 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 4 8469643 8469643 C T TRMT44 Silent p.V499V 0.27 TCGA-W3-AA1V-06 4 85696051 85696051 G A WDFY3 Missense_Mutation p.S1559F 0.34 deleterious(0.04) possibly_damaging(0.79) TCGA-W3-AA1V-06 4 85719167 85719167 A G WDFY3 Missense_Mutation p.Y973H 0.34 tolerated_low_confidence(0.3) benign(0.139) TCGA-W3-AA1V-06 4 85960 85960 C T Z95704.2 RNA 0.24 TCGA-W3-AA1V-06 4 875764 875764 G A GAK Missense_Mutation p.T531I 0.21 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1V-06 4 875765 875765 T A GAK Missense_Mutation p.T531S 0.20 tolerated(0.19) benign(0.075) TCGA-W3-AA1V-06 4 88534092 88534092 G A DSPP Missense_Mutation p.D252N 0.59 probably_damaging(0.961) TCGA-W3-AA1V-06 4 88583907 88583907 C T DMP1 Missense_Mutation p.S326F 0.35 deleterious(0.03) probably_damaging(0.977) TCGA-W3-AA1V-06 4 90034449 90034450 - TT TIGD2 Frame_Shift_Ins p.D111Lfs*17 0.31 TCGA-W3-AA1V-06 4 90170213 90170213 G A GPRIN3 Missense_Mutation p.P350L 0.44 deleterious(0.03) benign(0.122) TCGA-W3-AA1V-06 4 91389391 91389391 G T CCSER1 Missense_Mutation p.R537L 0.45 deleterious(0) benign(0.321) TCGA-W3-AA1V-06 4 93225819 93225819 C T GRID2 Silent p.F4F 0.30 TCGA-W3-AA1V-06 4 94690364 94690364 C T GRID2 Silent p.I788I 0.31 TCGA-W3-AA1V-06 4 94751095 94751095 G A ATOH1 Missense_Mutation p.E340K 0.31 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 4 9557806 9557806 G A MIR548I2 RNA 0.36 TCGA-W3-AA1V-06 4 96046263 96046263 C T BMPR1B Silent p.L222L 0.39 TCGA-W3-AA1V-06 4 99049665 99049665 G A STPG2 Missense_Mutation p.H101Y 0.38 tolerated(0.07) benign(0.008) TCGA-W3-AA1V-06 4 99064259 99064259 C T STPG2 Missense_Mutation p.G15S 0.50 deleterious(0.04) benign(0.411) TCGA-W3-AA1V-06 4 9922024 9922024 G A SLC2A9 Silent p.L329L 0.27 TCGA-W3-AA1V-06 4 997348 997348 C T IDUA Silent p.L554L 0.39 TCGA-W3-AA1V-06 5 101576431 101576431 G A SLCO4C1 Nonsense_Mutation p.R623* 0.42 TCGA-W3-AA1V-06 5 101834519 101834519 C T SLCO6A1 Silent p.G10G 0.33 TCGA-W3-AA1V-06 5 102286496 102286496 G A PAM Missense_Mutation p.E293K 0.50 tolerated(0.08) probably_damaging(0.962) TCGA-W3-AA1V-06 5 102519052 102519052 C T PPIP5K2 Missense_Mutation p.P1014S 0.35 tolerated_low_confidence(0.25) benign(0.004) TCGA-W3-AA1V-06 5 102526672 102526672 C T PPIP5K2 Missense_Mutation p.T1140I 0.23 deleterious_low_confidence(0.01) benign(0.002) TCGA-W3-AA1V-06 5 107197400 107197400 G A FBXL17 3'UTR 0.39 TCGA-W3-AA1V-06 5 108203484 108203484 G A FER Silent p.K166K 0.27 TCGA-W3-AA1V-06 5 108714834 108714834 G A PJA2 Silent p.S118S 0.30 TCGA-W3-AA1V-06 5 108719202 108719202 G A PJA2 5'UTR 0.38 TCGA-W3-AA1V-06 5 109124690 109124690 C T MAN2A1 Missense_Mutation p.L606F 0.34 deleterious(0.01) benign(0.172) TCGA-W3-AA1V-06 5 110819865 110819865 G A CAMK4 Missense_Mutation p.G375R 0.26 tolerated(0.07) benign(0.157) TCGA-W3-AA1V-06 5 110819866 110819866 G T CAMK4 Missense_Mutation p.G375V 0.26 tolerated(0.13) benign(0.004) TCGA-W3-AA1V-06 5 110836803 110836803 C T STARD4 Silent p.V98V 0.29 TCGA-W3-AA1V-06 5 11111058 11111058 C T CTNND2 Missense_Mutation p.G792E 0.36 tolerated(0.08) benign(0.255) TCGA-W3-AA1V-06 5 11111059 11111059 C T CTNND2 Missense_Mutation p.G792R 0.36 deleterious(0.04) benign(0.128) TCGA-W3-AA1V-06 5 114588859 114588859 G A PGGT1B Silent p.S78S 0.46 TCGA-W3-AA1V-06 5 118183816 118183816 G A DTWD2 Missense_Mutation p.S232F 0.32 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1V-06 5 118533562 118533562 C T DMXL1 Silent p.I2552I 0.30 TCGA-W3-AA1V-06 5 118729000 118729000 C T TNFAIP8 Missense_Mutation p.P174L 0.28 tolerated(0.35) benign(0.053) TCGA-W3-AA1V-06 5 121413191 121413191 C T LOX Missense_Mutation p.D164N 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-W3-AA1V-06 5 121786629 121786629 C T SNCAIP Missense_Mutation p.A696V 0.48 tolerated(0.22) benign(0.005) TCGA-W3-AA1V-06 5 125971923 125971923 G A C5orf48 Missense_Mutation p.R132Q 0.39 tolerated_low_confidence(0.17) benign(0.017) TCGA-W3-AA1V-06 5 126790267 126790267 G A MEGF10 Missense_Mutation p.G997E 0.31 deleterious(0.05) possibly_damaging(0.669) TCGA-W3-AA1V-06 5 126993250 126993250 C T CTXN3 Missense_Mutation p.P13S 0.24 deleterious(0.01) benign(0.005) TCGA-W3-AA1V-06 5 127626512 127626512 G A FBN2 Silent p.F2119F 0.32 TCGA-W3-AA1V-06 5 127648361 127648361 C T FBN2 Missense_Mutation p.G1615E 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 127671763 127671763 C T FBN2 Missense_Mutation p.G1214E 0.20 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 5 127686684 127686684 C T FBN2 Silent p.G896G 0.52 TCGA-W3-AA1V-06 5 127872153 127872153 G A FBN2 Silent p.F93F 0.23 TCGA-W3-AA1V-06 5 128365332 128365332 G A SLC27A6 Missense_Mutation p.E539K 0.22 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 5 129030518 129030518 G A ADAMTS19 Missense_Mutation p.R969Q 0.24 deleterious(0.02) possibly_damaging(0.701) TCGA-W3-AA1V-06 5 129521113 129521113 C T CHSY3 Missense_Mutation p.P760S 0.22 tolerated(0.25) benign(0.002) TCGA-W3-AA1V-06 5 130764787 130764787 G A CTC-432M15.3 Missense_Mutation p.P1580S 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 131054749 131054749 G A FNIP1 Missense_Mutation p.P154S 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 131308509 131308509 C G ACSL6 Missense_Mutation p.E416Q 0.18 deleterious(0.05) benign(0.376) TCGA-W3-AA1V-06 5 131411487 131411487 A G CSF2 Missense_Mutation p.N126S 0.48 tolerated(0.2) benign(0.016) TCGA-W3-AA1V-06 5 131670586 131670586 G A SLC22A4 Missense_Mutation p.G408R 0.23 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 5 132010198 132010198 G A IL4 Silent p.K61K 0.15 TCGA-W3-AA1V-06 5 133914766 133914766 C T JADE2 Missense_Mutation p.P711L 0.29 tolerated(0.06) benign(0.001) TCGA-W3-AA1V-06 5 134044549 134044549 C T SEC24A Missense_Mutation p.P900S 0.50 deleterious(0.01) probably_damaging(0.969) TCGA-W3-AA1V-06 5 134154639 134154639 C T DDX46 Silent p.F973F 0.28 TCGA-W3-AA1V-06 5 134782208 134782208 C T C5orf20 Silent p.Q197Q 0.27 TCGA-W3-AA1V-06 5 134782503 134782503 G A C5orf20 Missense_Mutation p.S99L 0.19 tolerated_low_confidence(0.46) benign(0) TCGA-W3-AA1V-06 5 135567126 135567126 G A TRPC7 Silent p.L652L 0.21 TCGA-W3-AA1V-06 5 135602098 135602098 G A TRPC7 Silent p.F385F 0.43 TCGA-W3-AA1V-06 5 13701433 13701433 C T DNAH5 Missense_Mutation p.G4484D 0.47 probably_damaging(0.982) TCGA-W3-AA1V-06 5 13714613 13714613 C T DNAH5 Silent p.K4342K 0.53 TCGA-W3-AA1V-06 5 13716698 13716698 C T DNAH5 Silent p.K4269K 0.19 TCGA-W3-AA1V-06 5 137242064 137242064 G A PKD2L2 Missense_Mutation p.E306K 0.25 tolerated(0.93) benign(0.019) TCGA-W3-AA1V-06 5 137486638 137486638 G A BRD8 Silent p.C972C 0.63 TCGA-W3-AA1V-06 5 137515509 137515509 C T KIF20A Missense_Mutation p.S47F 0.17 deleterious(0) benign(0.076) TCGA-W3-AA1V-06 5 137515516 137515516 C T KIF20A Silent p.S49S 0.16 TCGA-W3-AA1V-06 5 13759072 13759072 C T DNAH5 Silent p.E3434E 0.36 TCGA-W3-AA1V-06 5 137665277 137665277 G A CDC25C Missense_Mutation p.T85I 0.55 tolerated(0.07) benign(0.008) TCGA-W3-AA1V-06 5 137754837 137754837 C T KDM3B Missense_Mutation p.P1211S 0.42 tolerated(0.36) benign(0.001) TCGA-W3-AA1V-06 5 13776634 13776634 C T DNAH5 Missense_Mutation p.R3096Q 0.47 possibly_damaging(0.553) TCGA-W3-AA1V-06 5 13776696 13776696 C T DNAH5 Missense_Mutation p.M3075I 0.48 benign(0.072) TCGA-W3-AA1V-06 5 137767186 137767186 C T KDM3B Missense_Mutation p.R1715C 0.31 tolerated(0.06) benign(0.176) TCGA-W3-AA1V-06 5 13780940 13780940 C T DNAH5 Silent p.T2983T 0.38 TCGA-W3-AA1V-06 5 13781035 13781035 C T DNAH5 Missense_Mutation p.A2952T 0.32 possibly_damaging(0.787) TCGA-W3-AA1V-06 5 13793757 13793757 G A DNAH5 Silent p.I2697I 0.33 TCGA-W3-AA1V-06 5 13807816 13807816 C T DNAH5 Missense_Mutation p.E2591K 0.43 possibly_damaging(0.621) TCGA-W3-AA1V-06 5 13820507 13820507 G A DNAH5 Silent p.P2263P 0.33 TCGA-W3-AA1V-06 5 13823422 13823422 G A DNAH5 Missense_Mutation p.L2213F 0.46 possibly_damaging(0.587) TCGA-W3-AA1V-06 5 138266520 138266520 G A CTNNA1 Missense_Mutation p.G732S 0.38 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 5 13845091 13845091 T A DNAH5 Missense_Mutation p.K1709I 0.46 benign(0.008) TCGA-W3-AA1V-06 5 13850828 13850828 C T DNAH5 Missense_Mutation p.E1683K 0.34 possibly_damaging(0.621) TCGA-W3-AA1V-06 5 13864608 13864608 C T DNAH5 Silent p.R1498R 0.50 TCGA-W3-AA1V-06 5 13870977 13870977 G A DNAH5 Missense_Mutation p.R1245C 0.32 possibly_damaging(0.689) TCGA-W3-AA1V-06 5 138758451 138758451 G A DNAJC18 Missense_Mutation p.S242F 0.58 deleterious(0) probably_damaging(0.956) TCGA-W3-AA1V-06 5 13885224 13885224 C T DNAH5 Missense_Mutation p.E953K 0.27 benign(0.292) TCGA-W3-AA1V-06 5 13886145 13886145 C T DNAH5 Missense_Mutation p.E891K 0.60 benign(0.292) TCGA-W3-AA1V-06 5 139193142 139193142 G A PSD2 Missense_Mutation p.G207E 0.64 tolerated(0.28) benign(0.027) TCGA-W3-AA1V-06 5 139218291 139218291 C T PSD2 Silent p.A634A 0.28 TCGA-W3-AA1V-06 5 139219687 139219687 G A PSD2 Missense_Mutation p.V682I 0.25 tolerated(0.16) benign(0.003) TCGA-W3-AA1V-06 5 139222036 139222036 G A PSD2 Missense_Mutation p.D765N 0.21 tolerated(0.26) benign(0.008) TCGA-W3-AA1V-06 5 13923478 13923478 C T DNAH5 Missense_Mutation p.E117K 0.33 benign(0.305) TCGA-W3-AA1V-06 5 139751183 139751183 C T SLC4A9 Missense_Mutation p.P906S 0.17 tolerated(0.65) benign(0.41) TCGA-W3-AA1V-06 5 139947817 139947817 C T SLC35A4 3'UTR 0.14 TCGA-W3-AA1V-06 5 140166714 140166714 C T PCDHA1 Missense_Mutation p.S280F 0.24 deleterious_low_confidence(0.05) benign(0.067) TCGA-W3-AA1V-06 5 140166981 140166981 T A PCDHA1 Missense_Mutation p.I369N 0.48 deleterious_low_confidence(0.03) possibly_damaging(0.645) TCGA-W3-AA1V-06 5 140180862 140180862 G A PCDHA3 Missense_Mutation p.G27E 0.28 deleterious_low_confidence(0.01) benign(0.301) TCGA-W3-AA1V-06 5 140182177 140182177 G T PCDHA3 Missense_Mutation p.K465N 0.49 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-W3-AA1V-06 5 140182605 140182605 C T PCDHA3 Missense_Mutation p.S608L 0.40 tolerated_low_confidence(0.05) benign(0.358) TCGA-W3-AA1V-06 5 140183220 140183220 C T PCDHA3 Intron 0.35 TCGA-W3-AA1V-06 5 140184731 140184731 G A PCDHA2 Intron 0.64 TCGA-W3-AA1V-06 5 140187368 140187368 C T PCDHA4 Missense_Mutation p.S199F 0.25 tolerated_low_confidence(0.69) benign(0.396) TCGA-W3-AA1V-06 5 140188116 140188116 G A PCDHA4 Silent p.V448V 0.21 TCGA-W3-AA1V-06 5 140203320 140203320 G A PCDHA5 Missense_Mutation p.G654R 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W3-AA1V-06 5 140208106 140208106 G A PCDHA6 Missense_Mutation p.E144K 0.25 deleterious_low_confidence(0.03) probably_damaging(0.978) TCGA-W3-AA1V-06 5 140209499 140209499 C T PCDHA6 Missense_Mutation p.S608L 0.25 tolerated_low_confidence(0.05) benign(0.411) TCGA-W3-AA1V-06 5 140215744 140215744 G A PCDHA7 Silent p.A592A 0.51 TCGA-W3-AA1V-06 5 140222725 140222725 C T PCDHA8 Missense_Mutation p.L607F 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-AA1V-06 5 140229521 140229521 G A PCDHA9 Missense_Mutation p.D481N 0.49 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-W3-AA1V-06 5 140236310 140236310 C T PCDHA10 Missense_Mutation p.S226F 0.25 deleterious_low_confidence(0) benign(0.243) TCGA-W3-AA1V-06 5 140236427 140236427 C T PCDHA10 Missense_Mutation p.A265V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1V-06 5 140242607 140242607 C T AC005609.1 Silent p.A123A 0.72 TCGA-W3-AA1V-06 5 140250374 140250374 G A PCDHA11 Silent p.P562P 0.52 TCGA-W3-AA1V-06 5 140251053 140251053 G A PCDHA11 Missense_Mutation p.E789K 0.50 tolerated_low_confidence(0.24) benign(0.065) TCGA-W3-AA1V-06 5 140257369 140257369 C T PCDHA12 Missense_Mutation p.A771V 0.12 tolerated_low_confidence(0.15) benign(0.43) TCGA-W3-AA1V-06 5 140262723 140262723 A G PCDHA13 Silent p.V290V 0.24 TCGA-W3-AA1V-06 5 140263101 140263101 G A PCDHA13 Silent p.E416E 0.49 TCGA-W3-AA1V-06 5 140307018 140307018 G A PCDHAC1 Missense_Mutation p.E181K 0.22 tolerated(1) benign(0.003) TCGA-W3-AA1V-06 5 140308041 140308041 C T PCDHAC1 Missense_Mutation p.H522Y 0.30 tolerated(0.37) benign(0.119) TCGA-W3-AA1V-06 5 140308074 140308074 C T PCDHAC1 Missense_Mutation p.P533S 0.28 deleterious(0.02) probably_damaging(0.978) TCGA-W3-AA1V-06 5 140308819 140308819 G A PCDHAC1 Missense_Mutation p.R781Q 0.51 deleterious(0.04) benign(0.018) TCGA-W3-AA1V-06 5 140432054 140432054 C T PCDHB1 Silent p.V333V 0.29 TCGA-W3-AA1V-06 5 140474699 140474699 C T PCDHB2 Nonsense_Mutation p.Q109* 0.42 TCGA-W3-AA1V-06 5 140474938 140474938 C T PCDHB2 Silent p.L188L 0.26 TCGA-W3-AA1V-06 5 140475134 140475134 C T PCDHB2 Missense_Mutation p.P254S 0.26 tolerated_low_confidence(0.06) benign(0.158) TCGA-W3-AA1V-06 5 140480209 140480209 C T PCDHB3 5'Flank 0.12 TCGA-W3-AA1V-06 5 140480660 140480660 C T PCDHB3 Silent p.L143L 0.29 TCGA-W3-AA1V-06 5 140481514 140481514 G A PCDHB3 Silent p.G427G 0.22 TCGA-W3-AA1V-06 5 140482275 140482275 C T PCDHB3 Missense_Mutation p.A681V 0.18 tolerated_low_confidence(0.14) benign(0.017) TCGA-W3-AA1V-06 5 140482276 140482276 C T PCDHB3 Silent p.A681A 0.17 TCGA-W3-AA1V-06 5 140501986 140501986 G A PCDHB4 Missense_Mutation p.E136K 0.22 deleterious_low_confidence(0.05) benign(0.245) TCGA-W3-AA1V-06 5 140502152 140502152 C T PCDHB4 Missense_Mutation p.P191L 0.48 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-W3-AA1V-06 5 140503207 140503207 G A PCDHB4 Missense_Mutation p.E543K 0.32 deleterious(0.01) benign(0.067) TCGA-W3-AA1V-06 5 140515964 140515964 G A PCDHB5 Silent p.V316V 0.22 TCGA-W3-AA1V-06 5 140515965 140515965 G A PCDHB5 Missense_Mutation p.E317K 0.22 tolerated_low_confidence(0.08) benign(0.005) TCGA-W3-AA1V-06 5 140530736 140530736 C T PCDHB6 Missense_Mutation p.R300W 0.47 deleterious(0.01) possibly_damaging(0.75) TCGA-W3-AA1V-06 5 140554096 140554096 C T PCDHB7 Silent p.F560F 0.47 TCGA-W3-AA1V-06 5 140554534 140554534 C T PCDHB7 Silent p.F706F 0.15 TCGA-W3-AA1V-06 5 140554600 140554600 C T PCDHB7 Silent p.G728G 0.13 TCGA-W3-AA1V-06 5 140558344 140558344 T A PCDHB8 Missense_Mutation p.F243L 0.14 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-W3-AA1V-06 5 140558507 140558507 T C PCDHB8 Silent p.L298L 0.17 TCGA-W3-AA1V-06 5 140558751 140558751 A C PCDHB8 Missense_Mutation p.N379T 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-W3-AA1V-06 5 140558774 140558774 C T PCDHB8 Nonsense_Mutation p.Q387* 0.17 TCGA-W3-AA1V-06 5 140559004 140559004 G A PCDHB8 Silent p.E463E 0.19 TCGA-W3-AA1V-06 5 140559401 140559401 G A PCDHB8 Missense_Mutation p.D596N 0.16 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-W3-AA1V-06 5 140562525 140562525 C T PCDHB16 Missense_Mutation p.P131S 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 140563923 140563923 G A PCDHB16 Missense_Mutation p.G597S 0.73 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 140572904 140572904 T C PCDHB10 Missense_Mutation p.L260P 0.28 tolerated_low_confidence(0.15) benign(0.007) TCGA-W3-AA1V-06 5 140581309 140581309 C T PCDHB11 Silent p.A654A 0.30 TCGA-W3-AA1V-06 5 140581660 140581660 C T PCDHB11 Silent p.I771I 0.72 TCGA-W3-AA1V-06 5 140581686 140581686 G A PCDHB11 Missense_Mutation p.G780E 0.20 tolerated_low_confidence(0.39) benign(0.005) TCGA-W3-AA1V-06 5 140589046 140589046 G A PCDHB12 Silent p.R189R 0.43 TCGA-W3-AA1V-06 5 140594639 140594639 C T PCDHB13 Missense_Mutation p.S315F 0.52 tolerated_low_confidence(0.09) benign(0.018) TCGA-W3-AA1V-06 5 140594887 140594887 G A PCDHB13 Missense_Mutation p.E398K 0.25 tolerated_low_confidence(0.57) benign(0.001) TCGA-W3-AA1V-06 5 140604126 140604126 C T PCDHB14 Missense_Mutation p.S350L 0.19 deleterious_low_confidence(0.01) benign(0.368) TCGA-W3-AA1V-06 5 140625756 140625756 G A PCDHB15 Missense_Mutation p.E204K 0.18 tolerated_low_confidence(0.12) benign(0.02) TCGA-W3-AA1V-06 5 140699561 140699561 G A TAF7 Silent p.I17I 0.51 TCGA-W3-AA1V-06 5 140718920 140718920 G A PCDHGA2 Missense_Mutation p.D128N 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-AA1V-06 5 140725286 140725286 C T PCDHGA3 Silent p.I562I 0.19 TCGA-W3-AA1V-06 5 140725484 140725484 G A PCDHGA3 Silent p.T628T 0.24 TCGA-W3-AA1V-06 5 140725560 140725560 C T PCDHGA3 Missense_Mutation p.L654F 0.29 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-W3-AA1V-06 5 140731272 140731272 G T PCDHGB1 Missense_Mutation p.R482I 0.42 deleterious(0.01) benign(0.222) TCGA-W3-AA1V-06 5 140734852 140734852 G A PCDHGA4 Missense_Mutation p.E29K 0.48 deleterious_low_confidence(0.04) benign(0.041) TCGA-W3-AA1V-06 5 140737183 140737183 C T PCDHGA4 Missense_Mutation p.L806F 0.52 tolerated_low_confidence(0.17) benign(0.005) TCGA-W3-AA1V-06 5 140739859 140739859 G A PCDHGB2 Missense_Mutation p.D53N 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-W3-AA1V-06 5 140740160 140740160 C T PCDHGB2 Missense_Mutation p.P153L 0.25 tolerated(0.18) benign(0.038) TCGA-W3-AA1V-06 5 140744581 140744581 C T PCDHGA5 Silent p.I228I 0.29 TCGA-W3-AA1V-06 5 140745738 140745738 C T PCDHGA5 Missense_Mutation p.P614L 0.30 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-W3-AA1V-06 5 140751131 140751131 C T PCDHGB3 Silent p.F390F 0.58 TCGA-W3-AA1V-06 5 140751143 140751143 C T PCDHGB3 Silent p.I394I 0.12 TCGA-W3-AA1V-06 5 140753794 140753794 C T PCDHGA6 Silent p.I48I 0.14 TCGA-W3-AA1V-06 5 140755037 140755037 G A PCDHGA6 Missense_Mutation p.E463K 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1V-06 5 140764167 140764167 C T PCDHGA7 Silent p.L567L 0.23 TCGA-W3-AA1V-06 5 140764215 140764215 G A PCDHGA7 Silent p.E583E 0.49 TCGA-W3-AA1V-06 5 140773662 140773662 G A PCDHGA8 Missense_Mutation p.G428R 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1V-06 5 140773764 140773764 C T PCDHGA8 Silent p.L462L 0.59 TCGA-W3-AA1V-06 5 140774664 140774664 G A PCDHGA8 Missense_Mutation p.D762N 0.27 deleterious_low_confidence(0.01) benign(0.224) TCGA-W3-AA1V-06 5 140783526 140783526 C T PCDHGA9 Missense_Mutation p.S336L 0.53 deleterious_low_confidence(0.01) benign(0.018) TCGA-W3-AA1V-06 5 140784766 140784766 C T PCDHGA9 Silent p.F749F 0.54 TCGA-W3-AA1V-06 5 140788295 140788295 C T PCDHGB6 Missense_Mutation p.P176S 0.33 tolerated(0.43) benign(0.023) TCGA-W3-AA1V-06 5 140788940 140788940 C T PCDHGB6 Missense_Mutation p.P391S 0.19 deleterious(0.02) possibly_damaging(0.718) TCGA-W3-AA1V-06 5 140794452 140794452 C T PCDHGA10 Silent p.A570A 0.25 TCGA-W3-AA1V-06 5 140800911 140800911 G A PCDHGA11 Silent p.E39E 0.47 TCGA-W3-AA1V-06 5 141051798 141051798 G A ARAP3 Silent p.L486L 0.27 TCGA-W3-AA1V-06 5 141059773 141059773 G A ARAP3 Missense_Mutation p.P94L 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 141236860 141236860 G A PCDH1 Silent p.T1092T 0.26 TCGA-W3-AA1V-06 5 141309764 141309764 C A KIAA0141 Missense_Mutation p.L227I 0.23 tolerated(0.14) benign(0.334) TCGA-W3-AA1V-06 5 142593612 142593612 A G ARHGAP26 Missense_Mutation p.D772G 0.31 tolerated(0.07) probably_damaging(0.959) TCGA-W3-AA1V-06 5 143853596 143853596 C T KCTD16 Silent p.F402F 0.17 TCGA-W3-AA1V-06 5 14419958 14419958 C T TRIO Silent p.I1677I 0.50 TCGA-W3-AA1V-06 5 14488189 14488189 C T TRIO Silent p.S2484S 0.55 TCGA-W3-AA1V-06 5 145175870 145175870 T A PRELID2 Intron 0.33 TCGA-W3-AA1V-06 5 145317736 145317736 C T SH3RF2 Missense_Mutation p.S82F 0.45 tolerated(0.71) benign(0.002) TCGA-W3-AA1V-06 5 145719498 145719498 C T POU4F3 Missense_Mutation p.H170Y 0.65 tolerated(0.2) possibly_damaging(0.658) TCGA-W3-AA1V-06 5 147040675 147040675 C T JAKMIP2 Missense_Mutation p.E155K 0.29 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1V-06 5 147276575 147276575 C T C5orf46 Missense_Mutation p.G82E 0.26 tolerated(0.44) probably_damaging(0.969) TCGA-W3-AA1V-06 5 147499858 147499858 G A SPINK5 Silent p.L814L 0.26 TCGA-W3-AA1V-06 5 14751312 14751312 C T ANKH Missense_Mutation p.E185K 0.63 tolerated(0.11) probably_damaging(0.996) TCGA-W3-AA1V-06 5 147516635 147516635 G A SPINK5 3'UTR 0.29 TCGA-W3-AA1V-06 5 147693732 147693732 T G SPINK7 Missense_Mutation p.C53G 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 147695202 147695202 G A SPINK7 Silent p.L71L 0.29 TCGA-W3-AA1V-06 5 147862800 147862800 G A HTR4 Missense_Mutation p.S418F 0.24 deleterious_low_confidence(0) benign(0.004) TCGA-W3-AA1V-06 5 147889156 147889156 G T HTR4 Silent p.A313A 0.52 TCGA-W3-AA1V-06 5 148384448 148384448 A G SH3TC2 Silent p.T1231T 0.38 TCGA-W3-AA1V-06 5 149011763 149011763 C T ARHGEF37 3'UTR 0.19 TCGA-W3-AA1V-06 5 149212897 149212897 C T PPARGC1B Missense_Mutation p.R421C 0.28 tolerated(0.09) benign(0.001) TCGA-W3-AA1V-06 5 149265933 149265933 C T PDE6A Missense_Mutation p.G578E 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 149323885 149323885 C T PDE6A Missense_Mutation p.D118N 0.46 tolerated(0.44) possibly_damaging(0.562) TCGA-W3-AA1V-06 5 149357402 149357402 G A SLC26A2 Missense_Mutation p.D63N 0.28 tolerated(0.6) benign(0.001) TCGA-W3-AA1V-06 5 149459883 149459883 C T CSF1R Nonsense_Mutation p.W108* 0.18 TCGA-W3-AA1V-06 5 149576789 149576789 C T SLC6A7 Silent p.A178A 0.27 TCGA-W3-AA1V-06 5 149784699 149784699 G A CD74 Silent p.F162F 0.21 TCGA-W3-AA1V-06 5 149919801 149919801 C T NDST1 Missense_Mutation p.S575F 0.59 deleterious(0.03) benign(0.001) TCGA-W3-AA1V-06 5 150028484 150028484 C T SYNPO Missense_Mutation p.T460I 0.39 tolerated(0.07) benign(0.023) TCGA-W3-AA1V-06 5 150274984 150274984 C T ZNF300 3'UTR 0.58 TCGA-W3-AA1V-06 5 150310978 150310978 C T ZNF300P1 RNA 0.33 TCGA-W3-AA1V-06 5 150436366 150436366 G A TNIP1 Silent p.S196S 0.43 TCGA-W3-AA1V-06 5 150512128 150512128 G A ANXA6 Silent p.F215F 0.18 TCGA-W3-AA1V-06 5 150715000 150715000 G A SLC36A2 Silent p.L212L 0.48 TCGA-W3-AA1V-06 5 150923475 150923475 C T FAT2 Missense_Mutation p.D2405N 0.19 probably_damaging(1) TCGA-W3-AA1V-06 5 150946904 150946904 G A FAT2 Missense_Mutation p.T530I 0.48 benign(0.008) TCGA-W3-AA1V-06 5 153054221 153054221 G A GRIA1 Silent p.K297K 0.26 TCGA-W3-AA1V-06 5 153085452 153085452 G A GRIA1 Missense_Mutation p.V560M 0.26 deleterious(0) probably_damaging(0.94) TCGA-W3-AA1V-06 5 153190634 153190634 C T GRIA1 Missense_Mutation p.S867L 0.12 deleterious_low_confidence(0.01) benign(0.075) TCGA-W3-AA1V-06 5 153190721 153190721 C T GRIA1 Missense_Mutation p.S896F 0.13 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-W3-AA1V-06 5 154393484 154393484 A T KIF4B Missense_Mutation p.K22I 0.47 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 5 154395342 154395342 G A KIF4B Nonsense_Mutation p.W641* 0.52 TCGA-W3-AA1V-06 5 156346503 156346503 C T TIMD4 Missense_Mutation p.G368R 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-W3-AA1V-06 5 156671391 156671391 G A ITK Missense_Mutation p.R451Q 0.20 tolerated(0.39) benign(0.112) TCGA-W3-AA1V-06 5 156742082 156742082 G A CYFIP2 Missense_Mutation p.E420K 0.24 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1V-06 5 156788477 156788477 G A CYFIP2 Silent p.G944G 0.44 TCGA-W3-AA1V-06 5 157214617 157214617 A C CLINT1 3'UTR 0.47 TCGA-W3-AA1V-06 5 157214940 157214940 G A CLINT1 Missense_Mutation p.P549L 0.38 tolerated(0.15) benign(0.092) TCGA-W3-AA1V-06 5 158603642 158603642 G A RNF145 Nonsense_Mutation p.Q237* 0.30 TCGA-W3-AA1V-06 5 159344459 159344459 G A ADRA1B Missense_Mutation p.G183R 0.57 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 159680334 159680334 C T CCNJL 3'UTR 0.25 TCGA-W3-AA1V-06 5 159996678 159996678 C T ATP10B Missense_Mutation p.G1255R 0.23 tolerated(0.17) possibly_damaging(0.635) TCGA-W3-AA1V-06 5 160721269 160721269 C T GABRB2 Missense_Mutation p.R453Q 0.47 deleterious(0.03) benign(0.298) TCGA-W3-AA1V-06 5 160973349 160973349 G A GABRB2 Missense_Mutation p.R50C 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 161112911 161112911 T A GABRA6 5'UTR 0.66 TCGA-W3-AA1V-06 5 161302645 161302645 A G GABRA1 Missense_Mutation p.S186G 0.35 deleterious(0) benign(0.038) TCGA-W3-AA1V-06 5 161322826 161322826 C T GABRA1 Silent p.F337F 0.24 TCGA-W3-AA1V-06 5 161528284 161528284 C T GABRG2 Missense_Mutation p.P198S 0.22 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 161580158 161580158 C T GABRG2 Silent p.H444H 0.38 TCGA-W3-AA1V-06 5 162048 162048 T C PLEKHG4B Silent p.L524L 0.55 TCGA-W3-AA1V-06 5 16465344 16465344 G A ZNF622 Missense_Mutation p.P144L 0.29 deleterious(0.01) probably_damaging(0.918) TCGA-W3-AA1V-06 5 167420093 167420093 G A TENM2 Silent p.L364L 0.33 TCGA-W3-AA1V-06 5 167420159 167420159 C T TENM2 Silent p.L386L 0.26 TCGA-W3-AA1V-06 5 167553812 167553812 C T TENM2 Missense_Mutation p.R755C 0.43 tolerated(0.05) possibly_damaging(0.836) TCGA-W3-AA1V-06 5 167589760 167589760 G A TENM2 Missense_Mutation p.G856E 0.39 deleterious(0.03) possibly_damaging(0.902) TCGA-W3-AA1V-06 5 167617436 167617436 C T TENM2 Silent p.I888I 0.41 TCGA-W3-AA1V-06 5 167617545 167617545 A T TENM2 Missense_Mutation p.N925Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 167675092 167675092 G A TENM2 Missense_Mutation p.G2383D 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 167675305 167675305 C T TENM2 Missense_Mutation p.P2454L 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 169685107 169685107 C T LCP2 Missense_Mutation p.R345K 0.42 tolerated(0.31) probably_damaging(0.99) TCGA-W3-AA1V-06 5 170308827 170308827 C T RANBP17 Silent p.L61L 0.43 TCGA-W3-AA1V-06 5 170336716 170336716 C T RANBP17 Missense_Mutation p.R181C 0.36 deleterious(0) benign(0.007) TCGA-W3-AA1V-06 5 170610387 170610387 G A RANBP17 Missense_Mutation p.R664Q 0.25 deleterious(0) possibly_damaging(0.652) TCGA-W3-AA1V-06 5 170883707 170883707 C T FGF18 Silent p.F174F 0.28 TCGA-W3-AA1V-06 5 170883727 170883727 G A FGF18 Missense_Mutation p.G181E 0.53 deleterious(0) possibly_damaging(0.856) TCGA-W3-AA1V-06 5 170883728 170883728 G A FGF18 Silent p.G181G 0.53 TCGA-W3-AA1V-06 5 170883819 170883819 C T FGF18 3'UTR 0.26 TCGA-W3-AA1V-06 5 172550189 172550189 C T CREBRF Silent p.L596L 0.25 TCGA-W3-AA1V-06 5 176004522 176004522 G A CDHR2 Silent p.V439V 0.27 TCGA-W3-AA1V-06 5 176016570 176016570 C T CDHR2 Silent p.F1053F 0.32 TCGA-W3-AA1V-06 5 176665467 176665467 G A NSD1 Missense_Mutation p.R1384Q 0.41 tolerated(0.1) benign(0.012) TCGA-W3-AA1V-06 5 176731696 176731696 C A PRELID1 Missense_Mutation p.L55I 0.31 tolerated(0.07) benign(0.393) TCGA-W3-AA1V-06 5 176731697 176731697 T A PRELID1 Missense_Mutation p.L55H 0.28 deleterious(0.02) possibly_damaging(0.497) TCGA-W3-AA1V-06 5 177473935 177473935 G A FAM153C Silent p.E112E 0.28 TCGA-W3-AA1V-06 5 177547221 177547221 G A N4BP3 Missense_Mutation p.G125R 0.35 deleterious(0.05) possibly_damaging(0.649) TCGA-W3-AA1V-06 5 177690307 177690307 C T COL23A1 Missense_Mutation p.G181R 0.37 deleterious(0) unknown(0) TCGA-W3-AA1V-06 5 178035379 178035379 G A CLK4 Nonsense_Mutation p.Q378* 0.38 TCGA-W3-AA1V-06 5 178139103 178139103 G A ZNF354A Silent p.S592S 0.19 TCGA-W3-AA1V-06 5 178359422 178359422 A C ZFP2 Missense_Mutation p.T370P 0.41 deleterious(0.04) possibly_damaging(0.876) TCGA-W3-AA1V-06 5 178391810 178391810 C T ZNF454 Silent p.I135I 0.36 TCGA-W3-AA1V-06 5 178392843 178392843 A T ZNF454 Missense_Mutation p.S480C 0.27 tolerated(0.31) probably_damaging(0.99) TCGA-W3-AA1V-06 5 178506828 178506828 G A ZNF354C Silent p.E465E 0.31 TCGA-W3-AA1V-06 5 178541183 178541183 C T ADAMTS2 Silent p.E1107E 0.41 TCGA-W3-AA1V-06 5 179147559 179147559 C T CANX Nonsense_Mutation p.Q394* 0.35 TCGA-W3-AA1V-06 5 179193027 179193027 C T MAML1 Missense_Mutation p.P339L 0.43 deleterious(0) benign(0.193) TCGA-W3-AA1V-06 5 179201007 179201007 C T MAML1 Missense_Mutation p.S727L 0.32 deleterious(0.01) benign(0.046) TCGA-W3-AA1V-06 5 179290569 179290569 G A TBC1D9B Missense_Mutation p.S1211F 0.32 deleterious(0) benign(0.275) TCGA-W3-AA1V-06 5 179300143 179300143 A C TBC1D9B Missense_Mutation p.F764L 0.30 tolerated(0.08) probably_damaging(0.978) TCGA-W3-AA1V-06 5 179467467 179467467 G A RNF130 Missense_Mutation p.T143I 0.32 tolerated(0.07) possibly_damaging(0.574) TCGA-W3-AA1V-06 5 179663431 179663431 C A MAPK9 Missense_Mutation p.D410Y 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 1798738 1798738 C T MRPL36 Silent p.%3D 0.15 TCGA-W3-AA1V-06 5 180048085 180048085 C T FLT4 Intron 0.33 TCGA-W3-AA1V-06 5 180058688 180058688 G A FLT4 Missense_Mutation p.S50F 0.38 deleterious(0) possibly_damaging(0.892) TCGA-W3-AA1V-06 5 180166989 180166989 C T OR2Y1 Missense_Mutation p.E24K 0.32 deleterious(0.01) possibly_damaging(0.78) TCGA-W3-AA1V-06 5 180167023 180167023 G A OR2Y1 Silent p.F12F 0.35 TCGA-W3-AA1V-06 5 180374533 180374533 C T BTNL8 Missense_Mutation p.S232L 0.37 tolerated(0.1) benign(0.009) TCGA-W3-AA1V-06 5 180377005 180377005 G A BTNL8 Missense_Mutation p.E322K 0.36 tolerated(0.56) benign(0.018) TCGA-W3-AA1V-06 5 180419847 180419847 C T BTNL3 Silent p.V28V 0.37 TCGA-W3-AA1V-06 5 180668528 180668528 T G GNB2L1 Silent p.L131L 0.38 TCGA-W3-AA1V-06 5 19473586 19473586 C T CDH18 Missense_Mutation p.E708K 0.24 deleterious(0.04) benign(0.023) TCGA-W3-AA1V-06 5 21975443 21975443 C T CDH12 Missense_Mutation p.G95R 0.48 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 23509621 23509621 G A PRDM9 Missense_Mutation p.E38K 0.43 tolerated_low_confidence(0.06) benign(0.13) TCGA-W3-AA1V-06 5 23526893 23526893 C A PRDM9 Missense_Mutation p.H566N 0.35 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 5 24488226 24488226 C T CDH10 Missense_Mutation p.R638Q 0.50 tolerated(0.07) benign(0.209) TCGA-W3-AA1V-06 5 26903764 26903764 C T CDH9 Silent p.G327G 0.28 TCGA-W3-AA1V-06 5 26903875 26903875 T C CDH9 Missense_Mutation p.I290M 0.28 deleterious(0.01) possibly_damaging(0.72) TCGA-W3-AA1V-06 5 2749889 2749889 C T IRX2 Missense_Mutation p.D88N 0.57 deleterious(0.04) probably_damaging(0.996) TCGA-W3-AA1V-06 5 2755254 2755254 C T C5orf38 3'UTR 0.46 TCGA-W3-AA1V-06 5 31323378 31323378 A T CDH6 Missense_Mutation p.D779V 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1V-06 5 32053914 32053914 C T PDZD2 Missense_Mutation p.R609C 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 32388572 32388572 C T ZFR Intron 0.32 TCGA-W3-AA1V-06 5 32712636 32712636 C T NPR3 Nonsense_Mutation p.Q252* 0.35 TCGA-W3-AA1V-06 5 33588820 33588820 C T ADAMTS12 Missense_Mutation p.D917N 0.44 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 5 35026522 35026522 G A AGXT2 Missense_Mutation p.P288L 0.41 deleterious(0) probably_damaging(0.942) TCGA-W3-AA1V-06 5 35032909 35032909 G A AGXT2 Missense_Mutation p.R233C 0.48 deleterious(0.01) probably_damaging(0.927) TCGA-W3-AA1V-06 5 35793267 35793267 G A SPEF2 Missense_Mutation p.E1521K 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-W3-AA1V-06 5 35857007 35857007 C T IL7R 5'UTR 0.50 TCGA-W3-AA1V-06 5 35910630 35910630 C T CAPSL Missense_Mutation p.M51I 0.38 tolerated(0.11) benign(0.084) TCGA-W3-AA1V-06 5 35988628 35988628 G A UGT3A1 Silent p.D40D 0.39 TCGA-W3-AA1V-06 5 36039594 36039594 G A UGT3A2 Nonsense_Mutation p.Q354* 0.43 TCGA-W3-AA1V-06 5 36117905 36117905 G A LMBRD2 Missense_Mutation p.P412S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 37364481 37364481 G A NUP155 Missense_Mutation p.P55S 0.43 tolerated(0.08) possibly_damaging(0.688) TCGA-W3-AA1V-06 5 38406296 38406296 G A EGFLAM Missense_Mutation p.D261N 0.41 deleterious_low_confidence(0.05) benign(0.12) TCGA-W3-AA1V-06 5 38425088 38425088 C T EGFLAM Silent p.I568I 0.38 TCGA-W3-AA1V-06 5 38493838 38493838 G A LIFR Silent p.L645L 0.46 TCGA-W3-AA1V-06 5 38523667 38523667 G A LIFR Missense_Mutation p.P139S 0.38 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 5 38884201 38884201 C T OSMR Missense_Mutation p.L231F 0.47 tolerated(0.14) benign(0.132) TCGA-W3-AA1V-06 5 38885586 38885586 C T OSMR Missense_Mutation p.S280L 0.36 tolerated(0.16) possibly_damaging(0.656) TCGA-W3-AA1V-06 5 38886289 38886289 C T OSMR Nonsense_Mutation p.R330* 0.40 TCGA-W3-AA1V-06 5 39289000 39289000 C T C9 Silent p.K490K 0.39 TCGA-W3-AA1V-06 5 39315915 39315915 C T C9 Missense_Mutation p.E278K 0.49 tolerated(0.24) benign(0.05) TCGA-W3-AA1V-06 5 39341799 39341799 G A C9 Missense_Mutation p.R63C 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 40835343 40835343 C T RPL37 5'UTR 0.30 TCGA-W3-AA1V-06 5 40931210 40931210 G A C7 Nonsense_Mutation p.W36* 0.38 TCGA-W3-AA1V-06 5 40931211 40931211 G A C7 Nonsense_Mutation p.W36* 0.38 TCGA-W3-AA1V-06 5 40934508 40934508 G A C7 Missense_Mutation p.E74K 0.43 tolerated(0.77) benign(0.005) TCGA-W3-AA1V-06 5 40959697 40959697 G A C7 Missense_Mutation p.E546K 0.35 deleterious(0.02) possibly_damaging(0.453) TCGA-W3-AA1V-06 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.60 deleterious(0.03) probably_damaging(0.944) TCGA-W3-AA1V-06 5 41005013 41005013 C T MROH2B Missense_Mutation p.E1292K 0.45 deleterious(0.04) possibly_damaging(0.891) TCGA-W3-AA1V-06 5 41007495 41007495 C T MROH2B Missense_Mutation p.E1224K 0.33 tolerated(0.13) benign(0.061) TCGA-W3-AA1V-06 5 41012758 41012758 G A MROH2B Missense_Mutation p.P1021L 0.41 tolerated(0.07) benign(0.003) TCGA-W3-AA1V-06 5 41051192 41051192 C T MROH2B Missense_Mutation p.E411K 0.73 tolerated(0.4) benign(0.099) TCGA-W3-AA1V-06 5 41154071 41154071 C T C6 Missense_Mutation p.E711K 0.55 deleterious(0.02) possibly_damaging(0.744) TCGA-W3-AA1V-06 5 41186288 41186288 G A C6 Missense_Mutation p.P204S 0.36 tolerated(0.86) benign(0.002) TCGA-W3-AA1V-06 5 41195936 41195936 C T C6 Missense_Mutation p.R182Q 0.33 tolerated(0.1) benign(0.106) TCGA-W3-AA1V-06 5 41382563 41382563 C T PLCXD3 Silent p.Q59Q 0.36 TCGA-W3-AA1V-06 5 42565968 42565968 C T GHR Intron 0.24 TCGA-W3-AA1V-06 5 42801390 42801390 G A SEPP1 Missense_Mutation p.T193I 0.35 deleterious(0.03) probably_damaging(0.962) TCGA-W3-AA1V-06 5 43543198 43543198 G A PAIP1 Silent p.F214F 0.42 TCGA-W3-AA1V-06 5 44310604 44310604 G A FGF10 Silent p.I118I 0.32 TCGA-W3-AA1V-06 5 45267205 45267205 C T HCN1 Missense_Mutation p.R590Q 0.31 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 5 45645581 45645581 A C HCN1 Silent p.V185V 0.50 TCGA-W3-AA1V-06 5 45645700 45645700 C T HCN1 Missense_Mutation p.D146N 0.39 deleterious(0.01) benign(0.005) TCGA-W3-AA1V-06 5 50058984 50058984 G A PARP8 Silent p.V142V 0.39 TCGA-W3-AA1V-06 5 50090704 50090704 C T PARP8 Missense_Mutation p.P294L 0.46 tolerated_low_confidence(0.66) benign(0.001) TCGA-W3-AA1V-06 5 5262862 5262862 C T ADAMTS16 Silent p.L919L 0.46 TCGA-W3-AA1V-06 5 5303719 5303719 G A ADAMTS16 Missense_Mutation p.R1009Q 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 5303720 5303720 G A ADAMTS16 Silent p.R1009R 0.31 TCGA-W3-AA1V-06 5 5454672 5454672 G A KIAA0947 Silent p.V204V 0.40 TCGA-W3-AA1V-06 5 54563028 54563028 G A DHX29 Missense_Mutation p.R1155C 0.27 deleterious(0.01) benign(0.053) TCGA-W3-AA1V-06 5 5463687 5463687 C T KIAA0947 Nonsense_Mutation p.Q1414* 0.38 TCGA-W3-AA1V-06 5 55110956 55110956 C T DDX4 Missense_Mutation p.S648L 0.36 deleterious(0.02) benign(0.409) TCGA-W3-AA1V-06 5 55422922 55422922 C T ANKRD55 Silent p.R208R 0.26 TCGA-W3-AA1V-06 5 56178153 56178153 T A MAP3K1 Silent p.L1042L 0.24 TCGA-W3-AA1V-06 5 58021835 58021835 G A RAB3C Missense_Mutation p.A87T 0.39 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 5 58652683 58652683 G A PDE4D Intron 0.33 TCGA-W3-AA1V-06 5 60050428 60050428 C T ELOVL7 3'UTR 0.40 TCGA-W3-AA1V-06 5 61789939 61789939 T C IPO11 Silent p.D566D 0.27 TCGA-W3-AA1V-06 5 64769474 64769474 G A ADAMTS6 Silent p.T9T 0.35 TCGA-W3-AA1V-06 5 65058876 65058876 C T NLN Missense_Mutation p.R131C 0.31 deleterious(0) benign(0.227) TCGA-W3-AA1V-06 5 65088371 65088371 C T NLN Silent p.L472L 0.33 TCGA-W3-AA1V-06 5 66396411 66396411 G A MAST4 Missense_Mutation p.R354Q 0.27 possibly_damaging(0.882) TCGA-W3-AA1V-06 5 66426155 66426155 C T MAST4 Silent p.I621I 0.21 TCGA-W3-AA1V-06 5 66462884 66462884 G A MAST4 3'UTR 0.38 TCGA-W3-AA1V-06 5 66462894 66462894 G A MAST4 3'UTR 0.27 TCGA-W3-AA1V-06 5 66462895 66462895 G A MAST4 3'UTR 0.27 TCGA-W3-AA1V-06 5 68409054 68409054 C T SLC30A5 Missense_Mutation p.P179S 0.31 tolerated(0.21) benign(0.181) TCGA-W3-AA1V-06 5 68715649 68715649 C T MARVELD2 Missense_Mutation p.S146F 0.26 deleterious(0) benign(0.316) TCGA-W3-AA1V-06 5 70813268 70813268 T G BDP1 Missense_Mutation p.N1660K 0.27 tolerated(0.15) benign(0.014) TCGA-W3-AA1V-06 5 71739591 71739591 C A ZNF366 Missense_Mutation p.G743C 0.15 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-W3-AA1V-06 5 71756463 71756463 C T ZNF366 Silent p.G287G 0.30 TCGA-W3-AA1V-06 5 72469950 72469950 C T TMEM174 Silent p.F230F 0.38 TCGA-W3-AA1V-06 5 72850781 72850781 G A ANKRA2 Nonsense_Mutation p.R215* 0.38 TCGA-W3-AA1V-06 5 72872803 72872803 C T UTP15 Missense_Mutation p.S279F 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-W3-AA1V-06 5 73045707 73045707 C T ARHGEF28 Missense_Mutation p.P27S 0.31 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 5 73048759 73048759 G A ARHGEF28 Silent p.T69T 0.24 TCGA-W3-AA1V-06 5 73048760 73048760 G A ARHGEF28 Missense_Mutation p.V70I 0.22 deleterious(0.05) probably_damaging(0.996) TCGA-W3-AA1V-06 5 73190315 73190315 C T ARHGEF28 Silent p.V1252V 0.28 TCGA-W3-AA1V-06 5 74325114 74325114 T A GCNT4 Missense_Mutation p.N250I 0.31 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 5 74981084 74981084 G A POC5 Missense_Mutation p.P452L 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-W3-AA1V-06 5 75893395 75893395 G A IQGAP2 Missense_Mutation p.E347K 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA1V-06 5 75913613 75913613 G A F2RL2 Missense_Mutation p.L307F 0.42 tolerated(0.28) benign(0.027) TCGA-W3-AA1V-06 5 75927847 75927847 A C IQGAP2 Missense_Mutation p.E592D 0.40 tolerated(0.46) benign(0.001) TCGA-W3-AA1V-06 5 75954427 75954427 G A IQGAP2 Missense_Mutation p.E822K 0.30 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 5 76028157 76028157 C T F2R Missense_Mutation p.A36V 0.24 tolerated(0.4) benign(0.001) TCGA-W3-AA1V-06 5 76128535 76128535 G A F2RL1 Missense_Mutation p.G35R 0.34 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 5 76633061 76633061 G A PDE8B Missense_Mutation p.E240K 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 78251223 78251223 G A ARSB Missense_Mutation p.H265Y 0.24 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 5 78294061 78294061 G A DMGDH Silent p.F815F 0.29 TCGA-W3-AA1V-06 5 78350027 78350027 G A DMGDH Missense_Mutation p.P174S 0.29 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 78610122 78610122 C G JMY Missense_Mutation p.L703V 0.23 tolerated(0.13) benign(0.005) TCGA-W3-AA1V-06 5 79027850 79027850 G A CMYA5 Missense_Mutation p.E1088K 0.21 benign(0.011) TCGA-W3-AA1V-06 5 79031428 79031428 C T CMYA5 Silent p.F2280F 0.29 TCGA-W3-AA1V-06 5 79032302 79032302 T A CMYA5 Missense_Mutation p.S2572T 0.29 benign(0.211) TCGA-W3-AA1V-06 5 79355646 79355646 C T THBS4 Missense_Mutation p.T302I 0.26 tolerated(0.71) benign(0.099) TCGA-W3-AA1V-06 5 79730011 79730011 C T ZFYVE16 Silent p.L15L 0.29 TCGA-W3-AA1V-06 5 79730012 79730012 C T ZFYVE16 Missense_Mutation p.L16F 0.30 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 5 79950372 79950372 G A DHFR 5'UTR 0.38 TCGA-W3-AA1V-06 5 79952260 79952260 C A MSH3 Missense_Mutation p.P90T 0.39 tolerated_low_confidence(0.35) benign(0.007) TCGA-W3-AA1V-06 5 80497237 80497237 G A RASGRF2 Missense_Mutation p.R961K 0.32 deleterious(0.04) benign(0.314) TCGA-W3-AA1V-06 5 82835369 82835369 C T VCAN Missense_Mutation p.P2183S 0.45 tolerated(0.08) benign(0.08) TCGA-W3-AA1V-06 5 82835370 82835370 C T VCAN Missense_Mutation p.P2183L 0.45 tolerated(0.09) benign(0.02) TCGA-W3-AA1V-06 5 82876291 82876291 C T VCAN 3'UTR 0.33 TCGA-W3-AA1V-06 5 840579 840579 G A ZDHHC11 Intron 0.27 TCGA-W3-AA1V-06 5 85578565 85578565 T A NBPF22P RNA 0.34 TCGA-W3-AA1V-06 5 89925273 89925273 C T GPR98 Missense_Mutation p.P586S 0.38 possibly_damaging(0.857) TCGA-W3-AA1V-06 5 89943320 89943320 C T GPR98 Missense_Mutation p.R1010C 0.26 possibly_damaging(0.626) TCGA-W3-AA1V-06 5 89949601 89949601 G A GPR98 Missense_Mutation p.G1404S 0.32 probably_damaging(0.982) TCGA-W3-AA1V-06 5 89970023 89970023 C T GPR98 Silent p.I1694I 0.44 TCGA-W3-AA1V-06 5 89979524 89979524 C T GPR98 Missense_Mutation p.A1929V 0.35 probably_damaging(0.935) TCGA-W3-AA1V-06 5 89979868 89979868 T C GPR98 Missense_Mutation p.S2044P 0.17 probably_damaging(0.976) TCGA-W3-AA1V-06 5 89981719 89981719 C T GPR98 Missense_Mutation p.H2133Y 0.17 probably_damaging(0.932) TCGA-W3-AA1V-06 5 90052388 90052388 G A GPR98 Missense_Mutation p.E3900K 0.46 possibly_damaging(0.899) TCGA-W3-AA1V-06 5 90059203 90059203 G A GPR98 Missense_Mutation p.G4068R 0.23 probably_damaging(0.995) TCGA-W3-AA1V-06 5 90074814 90074814 G A GPR98 Missense_Mutation p.E4328K 0.33 benign(0.029) TCGA-W3-AA1V-06 5 90103552 90103552 C T GPR98 Silent p.L4990L 0.14 TCGA-W3-AA1V-06 5 90136622 90136622 G A GPR98 Silent p.G5613G 0.32 TCGA-W3-AA1V-06 5 9052085 9052085 G A SEMA5A Silent p.V915V 0.33 TCGA-W3-AA1V-06 5 9108338 9108338 C T SEMA5A Missense_Mutation p.E663K 0.27 tolerated(0.12) possibly_damaging(0.472) TCGA-W3-AA1V-06 5 92924143 92924143 C T NR2F1 Silent p.F328F 0.43 TCGA-W3-AA1V-06 5 93856418 93856418 G A KIAA0825 Nonsense_Mutation p.R169* 0.42 TCGA-W3-AA1V-06 5 94043266 94043266 A G MCTP1 Missense_Mutation p.Y979H 0.34 deleterious(0.05) probably_damaging(0.972) TCGA-W3-AA1V-06 5 94786101 94786101 G A FAM81B 3'UTR 0.30 TCGA-W3-AA1V-06 5 94786102 94786102 G A FAM81B 3'UTR 0.36 TCGA-W3-AA1V-06 5 95765009 95765009 C T PCSK1 Missense_Mutation p.E65K 0.60 tolerated(0.7) benign(0.004) TCGA-W3-AA1V-06 5 96315245 96315245 C T LNPEP Silent p.C141C 0.21 TCGA-W3-AA1V-06 5 96315306 96315306 C T LNPEP Missense_Mutation p.P162S 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 5 96362355 96362355 C T LNPEP Nonsense_Mutation p.R920* 0.37 TCGA-W3-AA1V-06 5 96500756 96500756 G A RIOK2 Missense_Mutation p.P498L 0.25 deleterious(0.03) benign(0.112) TCGA-W3-AA1V-06 6 100055033 100055033 G T PRDM13 Missense_Mutation p.R41S 0.35 deleterious(0.04) benign(0.01) TCGA-W3-AA1V-06 6 100368757 100368757 C T MCHR2 3'UTR 0.19 TCGA-W3-AA1V-06 6 100838625 100838625 C T SIM1 Missense_Mutation p.G638E 0.59 tolerated_low_confidence(0.2) benign(0.339) TCGA-W3-AA1V-06 6 100911394 100911394 C T SIM1 5'UTR 0.21 TCGA-W3-AA1V-06 6 102337654 102337654 T C GRIK2 Missense_Mutation p.F555S 0.43 deleterious(0) probably_damaging(0.968) TCGA-W3-AA1V-06 6 105609662 105609662 G A POPDC3 Silent p.F41F 0.54 TCGA-W3-AA1V-06 6 105726092 105726092 G A PREP Missense_Mutation p.A687V 0.65 deleterious(0.04) benign(0.232) TCGA-W3-AA1V-06 6 105776718 105776718 G A PREP Missense_Mutation p.S400F 0.21 deleterious(0) possibly_damaging(0.891) TCGA-W3-AA1V-06 6 106634305 106634305 G A ATG5 3'UTR 0.57 TCGA-W3-AA1V-06 6 106960867 106960867 G A AIM1 Silent p.R217R 0.28 TCGA-W3-AA1V-06 6 106992663 106992663 G A AIM1 Missense_Mutation p.D1315N 0.45 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 106999782 106999782 G A AIM1 Missense_Mutation p.G1382R 0.51 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 107016495 107016495 A T AIM1 3'UTR 0.42 TCGA-W3-AA1V-06 6 107420488 107420488 A C BEND3 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-W3-AA1V-06 6 10775571 10775571 C T MAK Silent p.R529R 0.40 TCGA-W3-AA1V-06 6 10775631 10775631 C G MAK Missense_Mutation p.W509C 0.42 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA1V-06 6 10775632 10775632 C T MAK Nonsense_Mutation p.W509* 0.42 TCGA-W3-AA1V-06 6 107955792 107955792 C T SOBP Silent p.L582L 0.33 TCGA-W3-AA1V-06 6 10796279 10796279 C T MAK Silent p.E365E 0.50 TCGA-W3-AA1V-06 6 108067930 108067930 G A SCML4 Silent p.S150S 0.61 TCGA-W3-AA1V-06 6 108214759 108214759 T A SEC63 Missense_Mutation p.K534I 0.12 tolerated(0.1) probably_damaging(0.979) TCGA-W3-AA1V-06 6 108723238 108723238 C T LACE1 Missense_Mutation p.P263S 0.56 deleterious(0.02) possibly_damaging(0.77) TCGA-W3-AA1V-06 6 108984759 108984759 G A FOXO3 Silent p.G241G 0.54 TCGA-W3-AA1V-06 6 108985335 108985335 G A FOXO3 Silent p.T433T 0.67 TCGA-W3-AA1V-06 6 108985336 108985336 G A FOXO3 Missense_Mutation p.V434M 0.67 tolerated(0.1) benign(0.07) TCGA-W3-AA1V-06 6 109483949 109483949 C T CEP57L1 Intron 0.34 TCGA-W3-AA1V-06 6 109773722 109773724 ACG CA MICAL1 Frame_Shift_Del p.V223Afs*23 0.11 TCGA-W3-AA1V-06 6 109820258 109820258 C T AK9 Missense_Mutation p.E1679K 0.37 deleterious(0.04) probably_damaging(0.993) TCGA-W3-AA1V-06 6 109827625 109827625 C T AK9 Missense_Mutation p.G1585E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 110531958 110531958 G A CDC40 Missense_Mutation p.G227R 0.12 tolerated(0.34) benign(0.022) TCGA-W3-AA1V-06 6 11105541 11105541 C T ERVFRD-1 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 6 111694362 111694362 G A REV3L Silent p.T1732T 0.16 TCGA-W3-AA1V-06 6 116747753 116747753 C T DSE Missense_Mutation p.P145S 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-W3-AA1V-06 6 116747950 116747950 T A DSE Nonsense_Mutation p.C210* 0.25 TCGA-W3-AA1V-06 6 116832958 116832958 C T FAM26E Silent p.L33L 0.24 TCGA-W3-AA1V-06 6 117113974 117113974 C T GPRC6A Silent p.P704P 0.37 TCGA-W3-AA1V-06 6 117114040 117114040 C T GPRC6A Silent p.L682L 0.24 TCGA-W3-AA1V-06 6 117114163 117114163 G A GPRC6A Silent p.F641F 0.61 TCGA-W3-AA1V-06 6 117121872 117121872 C T GPRC6A Missense_Mutation p.D475N 0.62 tolerated(0.13) benign(0.424) TCGA-W3-AA1V-06 6 117243276 117243276 G A RFX6 Missense_Mutation p.E467K 0.65 deleterious(0) probably_damaging(0.96) TCGA-W3-AA1V-06 6 117248437 117248437 C T RFX6 Silent p.P711P 0.23 TCGA-W3-AA1V-06 6 117647578 117647578 C T ROS1 Splice_Site p.X1789_splice 0.69 TCGA-W3-AA1V-06 6 117686316 117686316 C T ROS1 Missense_Mutation p.E1009K 0.17 tolerated(0.14) possibly_damaging(0.51) TCGA-W3-AA1V-06 6 117710649 117710649 C T ROS1 Silent p.G541G 0.52 TCGA-W3-AA1V-06 6 117710802 117710802 G A ROS1 Silent p.I490I 0.53 TCGA-W3-AA1V-06 6 117737470 117737470 C T ROS1 Missense_Mutation p.G60E 0.11 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 117859831 117859831 C T DCBLD1 Missense_Mutation p.S270F 0.27 deleterious(0) possibly_damaging(0.683) TCGA-W3-AA1V-06 6 118556728 118556728 G A SLC35F1 Missense_Mutation p.G136R 0.31 deleterious(0) benign(0.32) TCGA-W3-AA1V-06 6 118886790 118886790 G A CEP85L Missense_Mutation p.P311S 0.69 tolerated(0.08) probably_damaging(0.956) TCGA-W3-AA1V-06 6 12121095 12121095 C T HIVEP1 Missense_Mutation p.S356L 0.40 tolerated(0.12) benign(0.013) TCGA-W3-AA1V-06 6 12164704 12164704 T G HIVEP1 3'UTR 0.54 TCGA-W3-AA1V-06 6 121768089 121768089 C T GJA1 Silent p.F32F 0.62 TCGA-W3-AA1V-06 6 121768708 121768708 C T GJA1 Missense_Mutation p.R239W 0.44 deleterious(0.01) possibly_damaging(0.507) TCGA-W3-AA1V-06 6 121769163 121769163 A T GJA1 3'UTR 0.20 TCGA-W3-AA1V-06 6 123384887 123384887 C T CLVS2 Missense_Mutation p.P322L 0.69 tolerated_low_confidence(0.1) benign(0.053) TCGA-W3-AA1V-06 6 123384896 123384896 C T CLVS2 Missense_Mutation p.S325F 0.62 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-W3-AA1V-06 6 125232112 125232112 C T RP11-510H23.1 RNA 0.18 TCGA-W3-AA1V-06 6 126342315 126342315 A T TRMT11 Missense_Mutation p.E383D 0.18 tolerated(0.08) benign(0.014) TCGA-W3-AA1V-06 6 127767989 127767989 G A KIAA0408 Missense_Mutation p.S492F 0.24 deleterious(0.05) possibly_damaging(0.851) TCGA-W3-AA1V-06 6 127796962 127796962 C T SOGA3 Missense_Mutation p.D737N 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 127797388 127797388 C T SOGA3 Missense_Mutation p.E595K 0.23 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 6 128134874 128134874 C T THEMIS Silent p.G304G 0.35 TCGA-W3-AA1V-06 6 128150970 128150970 C T THEMIS Silent p.Q120Q 0.62 TCGA-W3-AA1V-06 6 128176178 128176178 G A THEMIS Missense_Mutation p.P83S 0.18 tolerated(0.06) probably_damaging(1) TCGA-W3-AA1V-06 6 128306925 128306925 A G PTPRK Silent p.F1070F 0.21 TCGA-W3-AA1V-06 6 128330377 128330377 G A PTPRK Missense_Mutation p.P744L 0.20 tolerated(0.07) probably_damaging(0.996) TCGA-W3-AA1V-06 6 128540102 128540102 G A PTPRK Missense_Mutation p.S278F 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-W3-AA1V-06 6 129511471 129511471 C T LAMA2 Missense_Mutation p.S530F 0.33 tolerated(0.11) possibly_damaging(0.797) TCGA-W3-AA1V-06 6 129612865 129612865 G A LAMA2 Silent p.K952K 0.28 TCGA-W3-AA1V-06 6 129636996 129636996 C T LAMA2 Silent p.I1275I 0.69 TCGA-W3-AA1V-06 6 129649444 129649444 C T LAMA2 Nonsense_Mutation p.R1400* 0.21 TCGA-W3-AA1V-06 6 129714251 129714251 G A LAMA2 Missense_Mutation p.E1766K 0.62 tolerated(0.22) probably_damaging(0.934) TCGA-W3-AA1V-06 6 129794396 129794396 G A LAMA2 Silent p.E2446E 0.12 TCGA-W3-AA1V-06 6 130387495 130387495 C T L3MBTL3 Intron 0.19 TCGA-W3-AA1V-06 6 130762228 130762228 C T TMEM200A Nonsense_Mutation p.R221* 0.12 TCGA-W3-AA1V-06 6 130762860 130762860 G A TMEM200A Missense_Mutation p.M431I 0.41 tolerated(0.83) benign(0) TCGA-W3-AA1V-06 6 131229984 131229984 T A EPB41L2 Missense_Mutation p.K277I 0.16 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 6 131914250 131914250 G A MED23 Silent p.P1098P 0.22 TCGA-W3-AA1V-06 6 132022506 132022506 G A OR2A4 Silent p.L12L 0.56 TCGA-W3-AA1V-06 6 132196983 132196983 A T ENPP1 Missense_Mutation p.E568V 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 132939276 132939276 G A TAAR2 Silent p.F23F 0.17 TCGA-W3-AA1V-06 6 133015215 133015215 G A VNN1 Missense_Mutation p.P150S 0.29 tolerated(0.23) benign(0.054) TCGA-W3-AA1V-06 6 133070844 133070844 C T VNN2 Missense_Mutation p.G454E 0.62 tolerated(0.4) benign(0.263) TCGA-W3-AA1V-06 6 133789714 133789714 C T EYA4 Missense_Mutation p.S272F 0.63 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 6 134496036 134496036 G A SGK1 Intron 0.59 TCGA-W3-AA1V-06 6 136429884 136429884 G A PDE7B Missense_Mutation p.R33K 0.22 tolerated_low_confidence(0.14) benign(0.001) TCGA-W3-AA1V-06 6 13644826 13644826 G A RANBP9 Nonsense_Mutation p.R355* 0.25 TCGA-W3-AA1V-06 6 136582443 136582443 T A BCLAF1 Missense_Mutation p.E906V 0.09 deleterious(0.01) unknown(0) TCGA-W3-AA1V-06 6 136582588 136582588 A T BCLAF1 Missense_Mutation p.Y858N 0.09 tolerated(0.18) possibly_damaging(0.683) TCGA-W3-AA1V-06 6 136681915 136681915 G A MAP7 Missense_Mutation p.R597C 0.56 deleterious(0) unknown(0) TCGA-W3-AA1V-06 6 136682170 136682170 C T MAP7 Silent p.R580R 0.38 TCGA-W3-AA1V-06 6 136686984 136686984 C T MAP7 Missense_Mutation p.E410K 0.53 tolerated(0.06) benign(0.348) TCGA-W3-AA1V-06 6 136742890 136742890 G A MAP7 Missense_Mutation p.P61S 0.16 tolerated(0.15) benign(0.102) TCGA-W3-AA1V-06 6 136980440 136980440 A G MAP3K5 Silent p.F481F 0.16 TCGA-W3-AA1V-06 6 137519279 137519279 G A IFNGR1 Silent p.T453T 0.19 TCGA-W3-AA1V-06 6 138200024 138200024 C T TNFAIP3 Missense_Mutation p.P481L 0.60 tolerated(0.1) probably_damaging(1) TCGA-W3-AA1V-06 6 138200247 138200247 C T TNFAIP3 Silent p.L555L 0.67 TCGA-W3-AA1V-06 6 138607852 138607852 C T KIAA1244 Missense_Mutation p.R862C 0.57 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 138619892 138619892 G A KIAA1244 Silent p.L1266L 0.23 TCGA-W3-AA1V-06 6 138655782 138655782 G A KIAA1244 Silent p.K1933K 0.56 TCGA-W3-AA1V-06 6 138727203 138727203 C T HEBP2 Missense_Mutation p.P112S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 139094880 139094880 G A CCDC28A Nonsense_Mutation p.W23* 0.20 TCGA-W3-AA1V-06 6 139165628 139165628 C T ECT2L Silent p.R225R 0.59 TCGA-W3-AA1V-06 6 139266684 139266684 G A REPS1 Missense_Mutation p.S143F 0.22 deleterious(0.01) possibly_damaging(0.575) TCGA-W3-AA1V-06 6 142396799 142396799 C T NMBR Missense_Mutation p.E387K 0.17 deleterious(0.02) benign(0.037) TCGA-W3-AA1V-06 6 142764568 142764568 C T GPR126 Silent p.V1223V 0.65 TCGA-W3-AA1V-06 6 143091599 143091599 G A HIVEP2 Missense_Mutation p.P1426L 0.17 deleterious(0.05) benign(0.169) TCGA-W3-AA1V-06 6 143092278 143092278 G A HIVEP2 Missense_Mutation p.P1200S 0.21 tolerated(0.2) benign(0.139) TCGA-W3-AA1V-06 6 143092937 143092937 G A HIVEP2 Missense_Mutation p.S980F 0.55 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 6 143605264 143605264 C T AIG1 Silent p.P139P 0.19 TCGA-W3-AA1V-06 6 144075049 144075049 G A PHACTR2 Missense_Mutation p.E152K 0.41 tolerated(0.2) probably_damaging(0.96) TCGA-W3-AA1V-06 6 144262840 144262840 G A PLAGL1 Silent p.N371N 0.63 TCGA-W3-AA1V-06 6 144263445 144263445 C T PLAGL1 Missense_Mutation p.D170N 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 145069583 145069583 G A UTRN Missense_Mutation p.R2714Q 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-W3-AA1V-06 6 145079098 145079098 C T UTRN Missense_Mutation p.S2823L 0.57 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 146007413 146007413 G A EPM2A Silent p.D107D 0.15 TCGA-W3-AA1V-06 6 146264564 146264564 G A SHPRH Silent p.P651P 0.25 TCGA-W3-AA1V-06 6 149983275 149983275 G A LATS1 Missense_Mutation p.R995C 0.55 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 150057619 150057619 G A NUP43 Missense_Mutation p.H260Y 0.22 deleterious(0) possibly_damaging(0.863) TCGA-W3-AA1V-06 6 150343321 150343321 C T RAET1L Silent p.R48R 0.53 TCGA-W3-AA1V-06 6 151686607 151686607 G A ZBTB2 3'UTR 0.34 TCGA-W3-AA1V-06 6 151869446 151869446 A T CCDC170 Missense_Mutation p.D199V 0.17 deleterious(0) benign(0.239) TCGA-W3-AA1V-06 6 151917539 151917539 C T CCDC170 Nonsense_Mutation p.Q513* 0.58 TCGA-W3-AA1V-06 6 152201885 152201885 G A ESR1 Missense_Mutation p.E247K 0.27 deleterious(0) possibly_damaging(0.869) TCGA-W3-AA1V-06 6 152420134 152420134 C T ESR1 3'UTR 0.27 TCGA-W3-AA1V-06 6 152639255 152639255 G A SYNE1 Silent p.T5511T 0.43 TCGA-W3-AA1V-06 6 152651583 152651583 G A SYNE1 Missense_Mutation p.P4746L 0.56 probably_damaging(0.999) TCGA-W3-AA1V-06 6 152652305 152652305 A C SYNE1 Silent p.T4505T 0.16 TCGA-W3-AA1V-06 6 152712579 152712579 T G SYNE1 Missense_Mutation p.K2613Q 0.25 probably_damaging(0.978) TCGA-W3-AA1V-06 6 152738021 152738021 G A SYNE1 Nonsense_Mutation p.Q1851* 0.24 TCGA-W3-AA1V-06 6 152765652 152765652 G A SYNE1 Missense_Mutation p.S1244F 0.24 possibly_damaging(0.536) TCGA-W3-AA1V-06 6 152768652 152768652 C T SYNE1 Missense_Mutation p.G1204R 0.21 benign(0.382) TCGA-W3-AA1V-06 6 153042914 153042914 C T MYCT1 Silent p.I78I 0.22 TCGA-W3-AA1V-06 6 154763273 154763273 G A CNKSR3 Missense_Mutation p.S123L 0.23 tolerated(0.16) possibly_damaging(0.543) TCGA-W3-AA1V-06 6 15497299 15497299 C T JARID2 Missense_Mutation p.H615Y 0.25 deleterious(0) benign(0.11) TCGA-W3-AA1V-06 6 155450512 155450512 G A TIAM2 Missense_Mutation p.G52E 0.23 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-W3-AA1V-06 6 155469436 155469436 G A TIAM2 Missense_Mutation p.D666N 0.26 deleterious(0.02) benign(0.383) TCGA-W3-AA1V-06 6 155757678 155757678 C T NOX3 Silent p.R224R 0.64 TCGA-W3-AA1V-06 6 157529137 157529137 C T ARID1B 3'UTR 0.35 TCGA-W3-AA1V-06 6 158923338 158923338 C A TULP4 Silent p.T881T 0.41 TCGA-W3-AA1V-06 6 158923340 158923340 C T TULP4 Missense_Mutation p.P882L 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 158957788 158957788 T C TMEM181 Missense_Mutation p.F104L 0.21 tolerated_low_confidence(0.29) benign(0.001) TCGA-W3-AA1V-06 6 159456995 159456995 C T TAGAP Missense_Mutation p.G687E 0.14 tolerated(0.53) possibly_damaging(0.642) TCGA-W3-AA1V-06 6 159618543 159618543 G A FNDC1 Missense_Mutation p.D64N 0.21 deleterious(0) unknown(0) TCGA-W3-AA1V-06 6 159646613 159646613 G A FNDC1 Missense_Mutation p.D311N 0.23 deleterious(0) unknown(0) TCGA-W3-AA1V-06 6 159646676 159646676 G A FNDC1 Missense_Mutation p.E332K 0.20 deleterious(0) unknown(0) TCGA-W3-AA1V-06 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.61 TCGA-W3-AA1V-06 6 160328284 160328284 T C MAS1 Silent p.S99S 0.62 TCGA-W3-AA1V-06 6 160526111 160526111 A G IGF2R Missense_Mutation p.I2491V 0.40 tolerated(1) benign(0.015) TCGA-W3-AA1V-06 6 160663407 160663407 G A SLC22A2 Missense_Mutation p.S436L 0.18 deleterious(0.02) benign(0.004) TCGA-W3-AA1V-06 6 160664743 160664743 G A SLC22A2 Silent p.F380F 0.23 TCGA-W3-AA1V-06 6 160769547 160769547 C T SLC22A3 Silent p.F32F 0.52 TCGA-W3-AA1V-06 6 160898209 160898209 G A LPAL2 RNA 0.15 TCGA-W3-AA1V-06 6 160966498 160966498 A G LPA Missense_Mutation p.F1791S 0.17 deleterious(0.02) benign(0.045) TCGA-W3-AA1V-06 6 160978593 160978593 C T LPA Missense_Mutation p.E1548K 0.20 tolerated(0.49) benign(0.035) TCGA-W3-AA1V-06 6 161006101 161006101 C T LPA Silent p.R1422R 0.19 TCGA-W3-AA1V-06 6 161127444 161127444 G A PLG Missense_Mutation p.G19R 0.22 deleterious(0) probably_damaging(0.983) TCGA-W3-AA1V-06 6 161132202 161132202 C T PLG Missense_Mutation p.S129F 0.64 deleterious(0.01) benign(0.285) TCGA-W3-AA1V-06 6 161152246 161152246 G A PLG Missense_Mutation p.E474K 0.60 tolerated(0.11) benign(0.045) TCGA-W3-AA1V-06 6 161152847 161152847 G A PLG Silent p.Q503Q 0.22 TCGA-W3-AA1V-06 6 161174014 161174014 C A PLG Missense_Mutation p.A785E 0.59 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 6 161567600 161567600 C T AGPAT4 Missense_Mutation p.D267N 0.20 deleterious(0.01) benign(0.029) TCGA-W3-AA1V-06 6 161990433 161990433 G A PARK2 Missense_Mutation p.S296F 0.46 deleterious(0) possibly_damaging(0.868) TCGA-W3-AA1V-06 6 162394449 162394449 C T PARK2 Missense_Mutation p.E207K 0.56 deleterious(0.04) benign(0.194) TCGA-W3-AA1V-06 6 16290813 16290813 C T GMPR Missense_Mutation p.T273I 0.16 deleterious(0.02) possibly_damaging(0.837) TCGA-W3-AA1V-06 6 165746442 165746442 A C PDE10A 3'UTR 0.27 TCGA-W3-AA1V-06 6 166571982 166571982 G A T Missense_Mutation p.R377W 0.18 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 6 166845919 166845919 G A RPS6KA2 Silent p.G472G 0.13 TCGA-W3-AA1V-06 6 168227057 168227057 C T MLLT4 5'Flank 0.18 TCGA-W3-AA1V-06 6 168298926 168298926 C T MLLT4 Silent p.T453T 0.26 TCGA-W3-AA1V-06 6 169621581 169621581 C T THBS2 Silent p.K1105K 0.41 TCGA-W3-AA1V-06 6 169632767 169632767 C T THBS2 Missense_Mutation p.E642K 0.63 tolerated(0.27) benign(0.086) TCGA-W3-AA1V-06 6 169648671 169648671 C T THBS2 Silent p.K150K 0.24 TCGA-W3-AA1V-06 6 169648675 169648675 C T THBS2 Nonsense_Mutation p.W149* 0.25 TCGA-W3-AA1V-06 6 170592438 170592438 G A DLL1 Silent p.L643L 0.16 TCGA-W3-AA1V-06 6 1960171 1960171 C T GMDS Silent p.V191V 0.38 TCGA-W3-AA1V-06 6 24564563 24564563 G A KIAA0319 Silent p.V766V 0.70 TCGA-W3-AA1V-06 6 24843097 24843097 A G FAM65B Missense_Mutation p.I638T 0.42 deleterious(0.02) benign(0.272) TCGA-W3-AA1V-06 6 24843540 24843540 C T FAM65B Silent p.L490L 0.52 TCGA-W3-AA1V-06 6 25600786 25600786 C T LRRC16A Missense_Mutation p.R1122W 0.27 deleterious_low_confidence(0.03) benign(0.005) TCGA-W3-AA1V-06 6 25701504 25701504 G A SCGN Missense_Mutation p.D258N 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 6 26189257 26189257 G A HIST1H4D Silent p.A16A 0.69 TCGA-W3-AA1V-06 6 26189258 26189258 G A HIST1H4D Missense_Mutation p.A16V 0.68 deleterious(0.04) unknown(0) TCGA-W3-AA1V-06 6 26200206 26200206 A G HIST1H2BF 3'UTR 0.40 TCGA-W3-AA1V-06 6 2683263 2683263 C T MYLK4 Missense_Mutation p.D227N 0.28 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1V-06 6 2683341 2683341 C T MYLK4 Missense_Mutation p.E201K 0.28 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 27100360 27100360 G A HIST1H2BJ Missense_Mutation p.S57F 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-AA1V-06 6 27215820 27215820 T A PRSS16 Missense_Mutation p.F77Y 0.27 tolerated(0.12) benign(0.393) TCGA-W3-AA1V-06 6 27222810 27222810 G A PRSS16 Missense_Mutation p.G459E 0.25 deleterious(0.01) benign(0.18) TCGA-W3-AA1V-06 6 27222835 27222835 C T PRSS16 Silent p.I467I 0.62 TCGA-W3-AA1V-06 6 27368089 27368089 G A ZNF391 5'UTR 0.25 TCGA-W3-AA1V-06 6 28251702 28251702 C T PGBD1 Missense_Mutation p.H38Y 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.753) TCGA-W3-AA1V-06 6 28474170 28474170 C G GPX6 Missense_Mutation p.G93A 0.31 deleterious(0.03) possibly_damaging(0.618) TCGA-W3-AA1V-06 6 28497282 28497282 C T GPX5 Missense_Mutation p.L48F 0.73 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 6 28501791 28501791 G A GPX5 Nonsense_Mutation p.W171* 0.38 TCGA-W3-AA1V-06 6 28539880 28539880 C T SCAND3 Silent p.E1262E 0.23 TCGA-W3-AA1V-06 6 29012787 29012787 G A OR2W1 Missense_Mutation p.H56Y 0.72 deleterious(0.01) benign(0.002) TCGA-W3-AA1V-06 6 29055010 29055010 C T OR2B3 Missense_Mutation p.E6K 0.40 tolerated(0.27) benign(0.003) TCGA-W3-AA1V-06 6 29141441 29141441 A C OR2J2 Missense_Mutation p.E10A 0.46 tolerated(0.93) benign(0.149) TCGA-W3-AA1V-06 6 29141601 29141601 C T OR2J2 Silent p.F63F 0.65 TCGA-W3-AA1V-06 6 29231764 29231764 G A XXbac-BPG308J9.3 RNA 0.32 TCGA-W3-AA1V-06 6 29364792 29364792 G A OR12D2 Missense_Mutation p.G106S 0.28 tolerated(0.07) benign(0.399) TCGA-W3-AA1V-06 6 29364793 29364793 G A OR12D2 Missense_Mutation p.G106D 0.28 deleterious(0.02) benign(0.172) TCGA-W3-AA1V-06 6 29638568 29638568 G A MOG Intron 0.75 TCGA-W3-AA1V-06 6 29641146 29641146 G A ZFP57 Missense_Mutation p.R248C 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 29974812 29974812 G A ZNRD1-AS1 Intron 0.41 TCGA-W3-AA1V-06 6 30131402 30131402 G A TRIM15 5'UTR 0.27 TCGA-W3-AA1V-06 6 30297491 30297491 C T TRIM39 Missense_Mutation p.H133Y 0.45 tolerated(1) possibly_damaging(0.79) TCGA-W3-AA1V-06 6 30668348 30668348 A G MDC1 Missense_Mutation p.V2055A 0.30 tolerated(0.78) benign(0.335) TCGA-W3-AA1V-06 6 30673580 30673580 G A MDC1 Missense_Mutation p.P1127L 0.39 tolerated(0.4) benign(0.028) TCGA-W3-AA1V-06 6 30690316 30690316 C T TUBB Silent p.F20F 0.73 TCGA-W3-AA1V-06 6 30858833 30858833 C T DDR1 Silent p.Y167Y 0.34 TCGA-W3-AA1V-06 6 31079287 31079287 C T C6orf15 Nonsense_Mutation p.W283* 0.41 TCGA-W3-AA1V-06 6 31084063 31084063 G A CDSN Silent p.I443I 0.86 TCGA-W3-AA1V-06 6 31124702 31124702 G A CCHCR1 Silent p.P101P 0.17 TCGA-W3-AA1V-06 6 31238084 31238084 C T HLA-C Silent p.Q266Q 0.56 TCGA-W3-AA1V-06 6 31545347 31545347 C T TNF 3'UTR 0.79 TCGA-W3-AA1V-06 6 31545376 31545376 C T TNF 3'UTR 0.41 TCGA-W3-AA1V-06 6 31545377 31545377 C T TNF 3'UTR 0.41 TCGA-W3-AA1V-06 6 31557810 31557810 C T NCR3 Missense_Mutation p.G46E 0.32 tolerated(0.13) probably_damaging(0.98) TCGA-W3-AA1V-06 6 31557834 31557834 G A NCR3 Missense_Mutation p.P38L 0.68 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 6 31599986 31599986 C T PRRC2A Missense_Mutation p.P1179L 0.30 unknown(0) TCGA-W3-AA1V-06 6 31600227 31600227 G A PRRC2A Silent p.R1259R 0.26 TCGA-W3-AA1V-06 6 31683377 31683377 G A LY6G6D Missense_Mutation p.E52K 0.21 tolerated(0.53) benign(0.031) TCGA-W3-AA1V-06 6 31728484 31728484 C T MSH5 Silent p.F610F 0.75 TCGA-W3-AA1V-06 6 31749911 31749911 G A VARS Missense_Mutation p.P732S 0.33 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 31914953 31914953 G A CFB Silent p.A658A 0.34 TCGA-W3-AA1V-06 6 31940165 31940165 C T STK19 Missense_Mutation p.P103S 0.33 deleterious_low_confidence(0.01) benign(0.017) TCGA-W3-AA1V-06 6 32025944 32025944 C T TNXB Silent p.E2572E 0.33 TCGA-W3-AA1V-06 6 32026026 32026026 G A TNXB Missense_Mutation p.P2545L 0.55 possibly_damaging(0.796) TCGA-W3-AA1V-06 6 32083662 32083662 G A ATF6B Missense_Mutation p.H656Y 0.25 deleterious(0.04) probably_damaging(0.925) TCGA-W3-AA1V-06 6 32123528 32123528 C T PPT2 Missense_Mutation p.S140F 0.28 tolerated(0.07) possibly_damaging(0.452) TCGA-W3-AA1V-06 6 32166748 32166748 G A NOTCH4 Missense_Mutation p.P1497L 0.36 tolerated(0.06) benign(0.221) TCGA-W3-AA1V-06 6 32181983 32181983 C T NOTCH4 Missense_Mutation p.E691K 0.66 deleterious(0.01) benign(0.219) TCGA-W3-AA1V-06 6 32261228 32261228 C T C6orf10 Missense_Mutation p.G408R 0.40 tolerated(0.09) probably_damaging(0.999) TCGA-W3-AA1V-06 6 32362680 32362680 T C BTNL2 Missense_Mutation p.T401A 0.56 tolerated(0.66) benign(0.007) TCGA-W3-AA1V-06 6 32410366 32410366 G A HLA-DRA Missense_Mutation p.R75Q 0.80 tolerated(0.79) benign(0.001) TCGA-W3-AA1V-06 6 32610549 32610549 C T HLA-DQA1 3'UTR 0.87 TCGA-W3-AA1V-06 6 32629901 32629901 C T HLA-DQB1 Silent p.Q168Q 0.38 TCGA-W3-AA1V-06 6 32944544 32944544 G A BRD2 Missense_Mutation p.G344E 0.74 tolerated(0.56) probably_damaging(0.933) TCGA-W3-AA1V-06 6 33177437 33177437 C T RING1 Missense_Mutation p.S38F 0.67 deleterious(0) possibly_damaging(0.867) TCGA-W3-AA1V-06 6 33179547 33179547 C T RING1 Missense_Mutation p.S296F 0.29 deleterious(0) unknown(0) TCGA-W3-AA1V-06 6 33382570 33382570 C T PHF1 Missense_Mutation p.P338L 0.71 deleterious(0.01) possibly_damaging(0.884) TCGA-W3-AA1V-06 6 33391311 33391311 C T SYNGAP1 Missense_Mutation p.P42L 0.35 deleterious(0.01) benign(0.382) TCGA-W3-AA1V-06 6 33541651 33541651 G A BAK1 Silent p.L189L 0.72 TCGA-W3-AA1V-06 6 348111 348111 G A DUSP22 Missense_Mutation p.G91E 0.07 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 348112 348112 G A DUSP22 Silent p.G91G 0.07 TCGA-W3-AA1V-06 6 35213056 35213056 C A SCUBE3 Missense_Mutation p.P818H 0.70 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 35715038 35715038 G A ARMC12 Missense_Mutation p.E176K 0.30 tolerated(0.08) probably_damaging(0.974) TCGA-W3-AA1V-06 6 35995941 35995941 C T MAPK14 Nonsense_Mutation p.Q3* 0.30 TCGA-W3-AA1V-06 6 36104702 36104702 G A MAPK13 Silent p.G219G 0.33 TCGA-W3-AA1V-06 6 36291083 36291083 G A C6orf222 Silent p.T486T 0.73 TCGA-W3-AA1V-06 6 36931663 36931663 G A PI16 Nonsense_Mutation p.W445* 0.48 TCGA-W3-AA1V-06 6 37284574 37284574 C T TBC1D22B Missense_Mutation p.R421C 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-W3-AA1V-06 6 37619812 37619812 G A MDGA1 Silent p.V429V 0.30 TCGA-W3-AA1V-06 6 38885135 38885135 G A DNAH8 Missense_Mutation p.D3204N 0.47 possibly_damaging(0.859) TCGA-W3-AA1V-06 6 38976666 38976666 G A DNAH8 Missense_Mutation p.G4214R 0.28 probably_damaging(1) TCGA-W3-AA1V-06 6 39048513 39048513 G A GLP1R Missense_Mutation p.E408K 0.46 deleterious(0) benign(0.419) TCGA-W3-AA1V-06 6 39073537 39073537 G A SAYSD1 Nonsense_Mutation p.Q75* 0.40 TCGA-W3-AA1V-06 6 39267270 39267270 C T KCNK17 Missense_Mutation p.G311E 0.16 tolerated(0.85) benign(0.001) TCGA-W3-AA1V-06 6 39271865 39271865 G A KCNK17 Missense_Mutation p.L186F 0.35 tolerated(0.13) benign(0.03) TCGA-W3-AA1V-06 6 39893474 39893474 G A MOCS1 Silent p.I122I 0.31 TCGA-W3-AA1V-06 6 4099238 4099238 G A C6orf201 Silent p.E30E 0.44 TCGA-W3-AA1V-06 6 41303861 41303861 G A NCR2 Missense_Mutation p.S30N 0.45 tolerated(0.22) benign(0.173) TCGA-W3-AA1V-06 6 41554871 41554871 G A FOXP4 Missense_Mutation p.G212E 0.33 tolerated(0.22) benign(0.12) TCGA-W3-AA1V-06 6 41555206 41555206 C T FOXP4 Silent p.T276T 0.50 TCGA-W3-AA1V-06 6 41652500 41652500 G A TFEB Missense_Mutation p.S423F 0.30 tolerated(0.7) benign(0.01) TCGA-W3-AA1V-06 6 41774200 41774200 C T USP49 Silent p.Q174Q 0.37 TCGA-W3-AA1V-06 6 42147072 42147072 C T GUCA1A Silent p.I179I 0.57 TCGA-W3-AA1V-06 6 42196200 42196200 G A TRERF1 Silent p.L1162L 0.55 TCGA-W3-AA1V-06 6 42231095 42231095 G A TRERF1 Missense_Mutation p.P616L 0.15 deleterious(0.03) possibly_damaging(0.713) TCGA-W3-AA1V-06 6 42231096 42231096 G A TRERF1 Missense_Mutation p.P616S 0.16 tolerated(0.06) possibly_damaging(0.641) TCGA-W3-AA1V-06 6 42231146 42231146 G A TRERF1 Missense_Mutation p.S599F 0.19 deleterious(0.01) possibly_damaging(0.485) TCGA-W3-AA1V-06 6 42689609 42689609 G A PRPH2 Missense_Mutation p.T155I 0.48 deleterious(0) benign(0.352) TCGA-W3-AA1V-06 6 43020252 43020252 G A CUL7 Missense_Mutation p.S144F 0.42 deleterious(0.01) possibly_damaging(0.847) TCGA-W3-AA1V-06 6 43156447 43156447 C T CUL9 Missense_Mutation p.S725L 0.15 tolerated(0.12) benign(0.022) TCGA-W3-AA1V-06 6 43181580 43181580 G A CUL9 Missense_Mutation p.S1873N 0.27 tolerated(1) benign(0.379) TCGA-W3-AA1V-06 6 43269358 43269358 G A SLC22A7 Missense_Mutation p.R330Q 0.50 tolerated(0.38) benign(0.023) TCGA-W3-AA1V-06 6 43270024 43270024 G A SLC22A7 Missense_Mutation p.G383E 0.12 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 6 43322503 43322503 G A ZNF318 Missense_Mutation p.P857S 0.19 benign(0.068) TCGA-W3-AA1V-06 6 43968756 43968756 G A C6orf223 Silent p.K28K 0.26 TCGA-W3-AA1V-06 6 44148690 44148690 G A CAPN11 Missense_Mutation p.G609S 0.17 deleterious(0.01) benign(0.145) TCGA-W3-AA1V-06 6 44148691 44148691 G A CAPN11 Missense_Mutation p.G609D 0.17 deleterious(0.03) benign(0.089) TCGA-W3-AA1V-06 6 44200588 44200588 G C SLC29A1 Silent p.R368R 0.11 TCGA-W3-AA1V-06 6 44223263 44223263 C T SLC35B2 Missense_Mutation p.R160Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 44253769 44253769 G A TCTE1 Missense_Mutation p.L260F 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1V-06 6 44274093 44274093 G A AARS2 Silent p.F408F 0.29 TCGA-W3-AA1V-06 6 44275042 44275042 G A AARS2 Silent p.I328I 0.33 TCGA-W3-AA1V-06 6 44344852 44344852 C T SPATS1 3'UTR 0.26 TCGA-W3-AA1V-06 6 46518150 46518150 G A CYP39A1 Missense_Mutation p.P455S 0.62 tolerated(0.09) benign(0.41) TCGA-W3-AA1V-06 6 46656988 46656988 C T TDRD6 Missense_Mutation p.P375S 0.27 deleterious(0.04) possibly_damaging(0.897) TCGA-W3-AA1V-06 6 46656989 46656989 C T TDRD6 Missense_Mutation p.P375L 0.28 deleterious(0.04) probably_damaging(0.949) TCGA-W3-AA1V-06 6 46826289 46826289 G A GPR116 Silent p.F1117F 0.60 TCGA-W3-AA1V-06 6 46826316 46826316 G A GPR116 Silent p.G1108G 0.23 TCGA-W3-AA1V-06 6 47221091 47221091 G A TNFRSF21 Silent p.G470G 0.11 TCGA-W3-AA1V-06 6 47649202 47649202 G A GPR111 Missense_Mutation p.G303R 0.51 tolerated(0.07) possibly_damaging(0.813) TCGA-W3-AA1V-06 6 47976609 47976609 C T PTCHD4 Nonsense_Mutation p.W223* 0.27 TCGA-W3-AA1V-06 6 49399437 49399437 G A MUT 3'UTR 0.53 TCGA-W3-AA1V-06 6 49676850 49676850 T G CRISP2 Missense_Mutation p.E20D 0.56 tolerated(0.31) benign(0.005) TCGA-W3-AA1V-06 6 49700982 49700982 G A CRISP3 Silent p.L172L 0.26 TCGA-W3-AA1V-06 6 49754087 49754087 T C PGK2 Missense_Mutation p.K272E 0.30 deleterious(0.04) benign(0.215) TCGA-W3-AA1V-06 6 49928063 49928063 G A DEFB114 Missense_Mutation p.S51F 0.52 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1V-06 6 49936560 49936560 C T DEFB113 Missense_Mutation p.E27K 0.35 deleterious_low_confidence(0.01) benign(0.009) TCGA-W3-AA1V-06 6 50011412 50011412 G A DEFB112 Missense_Mutation p.S73L 0.22 tolerated(0.06) benign(0.117) TCGA-W3-AA1V-06 6 51524649 51524649 C A PKHD1 Missense_Mutation p.Q3425H 0.18 deleterious(0.01) benign(0.376) TCGA-W3-AA1V-06 6 51935864 51935864 G A PKHD1 Missense_Mutation p.P203S 0.39 tolerated(0.13) benign(0.009) TCGA-W3-AA1V-06 6 52009229 52009229 A G MIR206 RNA 0.13 TCGA-W3-AA1V-06 6 54805208 54805208 G A FAM83B Missense_Mutation p.R480Q 0.21 deleterious(0.03) possibly_damaging(0.55) TCGA-W3-AA1V-06 6 54805432 54805432 G T FAM83B Nonsense_Mutation p.E555* 0.31 TCGA-W3-AA1V-06 6 54805757 54805757 G A FAM83B Missense_Mutation p.R663Q 0.58 deleterious(0.02) probably_damaging(0.943) TCGA-W3-AA1V-06 6 54805764 54805764 C T FAM83B Silent p.F665F 0.54 TCGA-W3-AA1V-06 6 54806389 54806389 G A FAM83B Missense_Mutation p.E874K 0.33 tolerated(0.06) benign(0.093) TCGA-W3-AA1V-06 6 55039407 55039407 G A HCRTR2 Missense_Mutation p.D8N 0.20 tolerated_low_confidence(0.49) benign(0) TCGA-W3-AA1V-06 6 55196590 55196590 G A GFRAL Missense_Mutation p.D34N 0.12 tolerated(0.05) benign(0.265) TCGA-W3-AA1V-06 6 55620305 55620305 T A BMP5 3'UTR 0.25 TCGA-W3-AA1V-06 6 55659153 55659153 G A BMP5 Silent p.I252I 0.19 TCGA-W3-AA1V-06 6 55739228 55739228 G A BMP5 Missense_Mutation p.H146Y 0.16 deleterious(0) benign(0.217) TCGA-W3-AA1V-06 6 56035823 56035823 C T COL21A1 Silent p.Q248Q 0.32 TCGA-W3-AA1V-06 6 56047428 56047428 C T COL21A1 5'UTR 0.71 TCGA-W3-AA1V-06 6 56328442 56328442 G A DST Missense_Mutation p.S4980L 0.23 probably_damaging(0.999) TCGA-W3-AA1V-06 6 56468136 56468136 G A DST Intron 0.40 TCGA-W3-AA1V-06 6 56468430 56468430 G A DST Intron 0.40 TCGA-W3-AA1V-06 6 56479195 56479195 C T DST Missense_Mutation p.D1136N 0.36 benign(0.02) TCGA-W3-AA1V-06 6 57012543 57012543 C T ZNF451 Missense_Mutation p.H554Y 0.39 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 6 57013308 57013308 C T ZNF451 Missense_Mutation p.H809Y 0.31 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 6 57013335 57013335 C T ZNF451 Missense_Mutation p.P818S 0.14 deleterious(0.01) possibly_damaging(0.543) TCGA-W3-AA1V-06 6 6145865 6145865 C T F13A1 Missense_Mutation p.R729Q 0.46 tolerated(0.45) benign(0.002) TCGA-W3-AA1V-06 6 6175085 6175085 C T F13A1 Missense_Mutation p.R492K 0.29 tolerated(0.07) probably_damaging(0.982) TCGA-W3-AA1V-06 6 6251101 6251101 C A F13A1 Silent p.G211G 0.23 TCGA-W3-AA1V-06 6 6267018 6267018 C T F13A1 Missense_Mutation p.G115E 0.39 deleterious(0) probably_damaging(0.947) TCGA-W3-AA1V-06 6 63990657 63990657 C T LGSN Missense_Mutation p.E267K 0.67 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 6 66115113 66115113 G A EYS Missense_Mutation p.S337L 0.17 tolerated(0.27) possibly_damaging(0.765) TCGA-W3-AA1V-06 6 66204682 66204682 C T EYS Missense_Mutation p.G208R 0.20 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 69348872 69348872 T A BAI3 Nonsense_Mutation p.L102* 0.55 TCGA-W3-AA1V-06 6 69653824 69653824 G A BAI3 Missense_Mutation p.G378E 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-W3-AA1V-06 6 69758212 69758212 C T BAI3 Missense_Mutation p.P748L 0.78 tolerated(0.72) benign(0.438) TCGA-W3-AA1V-06 6 70071320 70071320 G T BAI3 Missense_Mutation p.K1385N 0.43 tolerated(0.26) benign(0.046) TCGA-W3-AA1V-06 6 70098702 70098702 G A BAI3 Silent p.L1496L 0.18 TCGA-W3-AA1V-06 6 70890372 70890372 G T COL19A1 Missense_Mutation p.G911V 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 71186941 71186941 C T FAM135A Missense_Mutation p.H150Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 71235304 71235304 C T FAM135A Silent p.S839S 0.47 TCGA-W3-AA1V-06 6 7182158 7182158 C T RREB1 Missense_Mutation p.S5L 0.23 tolerated_low_confidence(0.11) benign(0.053) TCGA-W3-AA1V-06 6 72889496 72889496 G A RIMS1 Silent p.Q230Q 0.35 TCGA-W3-AA1V-06 6 72892043 72892043 G A RIMS1 Missense_Mutation p.R290Q 0.64 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1V-06 6 73000526 73000526 C T RIMS1 Silent p.V1233V 0.19 TCGA-W3-AA1V-06 6 7365738 7365738 T A CAGE1 Missense_Mutation p.D719V 0.31 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 6 7405486 7405486 C T RIOK1 Silent p.F367F 0.37 TCGA-W3-AA1V-06 6 74072578 74072578 G A KHDC3L Silent p.P42P 0.20 TCGA-W3-AA1V-06 6 74072898 74072898 G A KHDC3L Missense_Mutation p.E84K 0.17 tolerated(0.06) benign(0.345) TCGA-W3-AA1V-06 6 74079486 74079486 G A OOEP Silent p.S10S 0.18 TCGA-W3-AA1V-06 6 7417619 7417619 C T RIOK1 Missense_Mutation p.P551L 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 74227643 74227643 G A EEF1A1 Missense_Mutation p.R427C 0.29 tolerated_low_confidence(0.13) benign(0.001) TCGA-W3-AA1V-06 6 74229735 74229735 C T EEF1A1 Silent p.K5K 0.25 TCGA-W3-AA1V-06 6 74497069 74497069 C G CD109 Missense_Mutation p.T817S 0.19 tolerated(0.19) benign(0.014) TCGA-W3-AA1V-06 6 7563972 7563972 G A DSP Missense_Mutation p.E244K 0.16 possibly_damaging(0.675) TCGA-W3-AA1V-06 6 75811765 75811765 G A COL12A1 Missense_Mutation p.R2807C 0.17 probably_damaging(0.999) TCGA-W3-AA1V-06 6 7581300 7581300 A T DSP Missense_Mutation p.K1626M 0.30 possibly_damaging(0.809) TCGA-W3-AA1V-06 6 7581301 7581301 G A DSP Silent p.K1626K 0.30 TCGA-W3-AA1V-06 6 7581515 7581515 G A DSP Missense_Mutation p.E1698K 0.45 probably_damaging(0.987) TCGA-W3-AA1V-06 6 75825606 75825606 C T COL12A1 Missense_Mutation p.E2531K 0.21 probably_damaging(0.991) TCGA-W3-AA1V-06 6 7582886 7582886 G A DSP Silent p.R1797R 0.23 TCGA-W3-AA1V-06 6 75840600 75840600 T A COL12A1 Missense_Mutation p.E2012V 0.35 probably_damaging(0.999) TCGA-W3-AA1V-06 6 75847292 75847292 G A COL12A1 Missense_Mutation p.P1752L 0.24 benign(0.022) TCGA-W3-AA1V-06 6 7585539 7585539 C T DSP Nonsense_Mutation p.Q2682* 0.37 TCGA-W3-AA1V-06 6 76022346 76022346 G A FILIP1 Missense_Mutation p.H1068Y 0.23 deleterious(0) possibly_damaging(0.886) TCGA-W3-AA1V-06 6 76022473 76022473 G A FILIP1 Silent p.P1025P 0.40 TCGA-W3-AA1V-06 6 76022621 76022621 C T FILIP1 Missense_Mutation p.R976Q 0.45 tolerated(0.34) possibly_damaging(0.476) TCGA-W3-AA1V-06 6 76022711 76022711 C T FILIP1 Missense_Mutation p.G946E 0.22 deleterious(0) probably_damaging(0.972) TCGA-W3-AA1V-06 6 76022712 76022712 C T FILIP1 Missense_Mutation p.G946R 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-W3-AA1V-06 6 76023594 76023594 C T FILIP1 Missense_Mutation p.D652N 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 6 76024011 76024011 T C FILIP1 Missense_Mutation p.K513E 0.28 deleterious(0) possibly_damaging(0.804) TCGA-W3-AA1V-06 6 76660465 76660465 G A IMPG1 Silent p.F546F 0.35 TCGA-W3-AA1V-06 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.43 TCGA-W3-AA1V-06 6 80223162 80223162 G A LCA5 Missense_Mutation p.R163C 0.60 deleterious(0.02) benign(0.277) TCGA-W3-AA1V-06 6 80223399 80223399 G A LCA5 Missense_Mutation p.R84C 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-W3-AA1V-06 6 80626591 80626591 G A ELOVL4 Missense_Mutation p.H227Y 0.25 tolerated(1) benign(0.005) TCGA-W3-AA1V-06 6 82909869 82909869 G A IBTK Missense_Mutation p.P1005L 0.12 tolerated(0.07) benign(0.049) TCGA-W3-AA1V-06 6 84233542 84233542 G A PRSS35 Missense_Mutation p.D128N 0.21 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 6 84233727 84233727 G A PRSS35 Silent p.L189L 0.21 TCGA-W3-AA1V-06 6 84290264 84290264 G A SNAP91 Missense_Mutation p.P735L 0.09 deleterious(0.05) probably_damaging(0.994) TCGA-W3-AA1V-06 6 84310997 84310997 G A SNAP91 Silent p.L439L 0.19 TCGA-W3-AA1V-06 6 84417560 84417560 G A SNAP91 Silent p.A29A 0.21 TCGA-W3-AA1V-06 6 84567108 84567108 A T RIPPLY2 Nonstop_Mutation p.*129Yext*3 0.69 TCGA-W3-AA1V-06 6 84913742 84913742 G A KIAA1009 Missense_Mutation p.S215F 0.68 tolerated(0.6) benign(0.413) TCGA-W3-AA1V-06 6 85457714 85457714 G A TBX18 Missense_Mutation p.P288L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1V-06 6 86227558 86227558 G A SNX14 Silent p.F728F 0.21 TCGA-W3-AA1V-06 6 87725863 87725863 G A HTR1E Missense_Mutation p.D271N 0.59 tolerated(0.49) possibly_damaging(0.464) TCGA-W3-AA1V-06 6 88374476 88374476 A G ORC3 Missense_Mutation p.S618G 0.40 tolerated(0.16) benign(0.007) TCGA-W3-AA1V-06 6 89614646 89614646 G A RNGTT Nonsense_Mutation p.Q158* 0.69 TCGA-W3-AA1V-06 6 90039660 90039660 G A UBE2J1 Missense_Mutation p.S232F 0.16 tolerated(0.06) benign(0.011) TCGA-W3-AA1V-06 6 90305695 90305695 T A ANKRD6 Missense_Mutation p.L61M 0.17 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 6 90340549 90340549 T A ANKRD6 Nonsense_Mutation p.Y670* 0.25 TCGA-W3-AA1V-06 6 90604538 90604538 G A GJA10 Silent p.Q117Q 0.21 TCGA-W3-AA1V-06 6 90605338 90605338 G A GJA10 Missense_Mutation p.G384E 0.56 tolerated(0.08) benign(0.055) TCGA-W3-AA1V-06 6 90605654 90605654 G A GJA10 Missense_Mutation p.M489I 0.64 tolerated_low_confidence(0.5) benign(0) TCGA-W3-AA1V-06 6 91254312 91254312 G A MAP3K7 Missense_Mutation p.S417L 0.22 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 6 93955044 93955044 G A EPHA7 Missense_Mutation p.L952F 0.40 tolerated(0.31) probably_damaging(1) TCGA-W3-AA1V-06 6 93967926 93967926 C T EPHA7 Silent p.L667L 0.17 TCGA-W3-AA1V-06 6 94120690 94120690 C T EPHA7 Missense_Mutation p.E121K 0.25 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 6 97246779 97246779 G A GPR63 Missense_Mutation p.H277Y 0.59 deleterious(0.01) probably_damaging(0.962) TCGA-W3-AA1V-06 6 9933535 9933535 G A OFCC1 Nonsense_Mutation p.Q7* 0.45 TCGA-W3-AA1V-06 6 99852494 99852494 G A PNISR Missense_Mutation p.R363C 0.20 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 7 100032994 100032994 A G PPP1R35 Missense_Mutation p.W251R 0.48 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 7 100150976 100150976 C T AGFG2 Silent p.V146V 0.18 TCGA-W3-AA1V-06 7 100218618 100218618 G A TFR2 Silent p.S756S 0.31 TCGA-W3-AA1V-06 7 100243896 100243896 G A ACTL6B Silent p.I392I 0.23 TCGA-W3-AA1V-06 7 100371062 100371062 C T ZAN Silent p.S1860S 0.27 TCGA-W3-AA1V-06 7 100389765 100389765 C T ZAN Silent p.F2568F 0.33 TCGA-W3-AA1V-06 7 100391463 100391463 C T ZAN Intron 0.39 TCGA-W3-AA1V-06 7 100405034 100405034 G A EPHB4 Nonsense_Mutation p.R763* 0.55 TCGA-W3-AA1V-06 7 100552339 100552339 G A MUC3A Missense_Mutation p.E364K 0.18 deleterious(0) probably_damaging(0.909) TCGA-W3-AA1V-06 7 100552395 100552395 G A MUC3A Missense_Mutation p.M382I 0.14 tolerated(0.07) benign(0.06) TCGA-W3-AA1V-06 7 100552620 100552620 G A MUC3A Silent p.R457R 0.09 TCGA-W3-AA1V-06 7 100676223 100676223 G A MUC17 Missense_Mutation p.G509E 0.26 possibly_damaging(0.546) TCGA-W3-AA1V-06 7 100677565 100677565 C T MUC17 Silent p.T956T 0.24 TCGA-W3-AA1V-06 7 100677591 100677591 C T MUC17 Missense_Mutation p.P965L 0.30 possibly_damaging(0.573) TCGA-W3-AA1V-06 7 100678701 100678701 G A MUC17 Missense_Mutation p.G1335E 0.48 unknown(0) TCGA-W3-AA1V-06 7 100679183 100679183 C T MUC17 Missense_Mutation p.P1496S 0.21 unknown(0) TCGA-W3-AA1V-06 7 100681060 100681060 C T MUC17 Silent p.T2121T 0.46 TCGA-W3-AA1V-06 7 100685945 100685945 G A MUC17 Missense_Mutation p.E3750K 0.27 benign(0.004) TCGA-W3-AA1V-06 7 100685995 100685995 G A MUC17 Silent p.T3766T 0.53 TCGA-W3-AA1V-06 7 100686218 100686218 G A MUC17 Missense_Mutation p.D3841N 0.24 benign(0.002) TCGA-W3-AA1V-06 7 100686896 100686896 C T MUC17 Missense_Mutation p.P4067S 0.64 benign(0) TCGA-W3-AA1V-06 7 100699482 100699482 T G MUC17 Missense_Mutation p.D4457E 0.21 unknown(0) TCGA-W3-AA1V-06 7 100731791 100731791 C T TRIM56 Missense_Mutation p.P400S 0.17 tolerated(0.3) benign(0.002) TCGA-W3-AA1V-06 7 100731792 100731792 C T TRIM56 Missense_Mutation p.P400L 0.17 tolerated(0.21) benign(0.001) TCGA-W3-AA1V-06 7 100849700 100849700 G A PLOD3 Silent p.F693F 0.36 TCGA-W3-AA1V-06 7 101063353 101063353 G A COL26A1 Nonsense_Mutation p.W85* 0.22 TCGA-W3-AA1V-06 7 101063362 101063362 C T COL26A1 Missense_Mutation p.P88L 0.49 deleterious(0.01) probably_damaging(0.99) TCGA-W3-AA1V-06 7 101183183 101183183 C T COL26A1 Silent p.L153L 0.23 TCGA-W3-AA1V-06 7 101188745 101188745 C T COL26A1 Missense_Mutation p.S277F 0.17 deleterious(0) possibly_damaging(0.653) TCGA-W3-AA1V-06 7 102106642 102106642 C T LRWD1 Silent p.L119L 0.18 TCGA-W3-AA1V-06 7 102760469 102760469 G A NAPEPLD Missense_Mutation p.R166C 0.48 deleterious(0) possibly_damaging(0.55) TCGA-W3-AA1V-06 7 1027948 1027948 C T CYP2W1 Silent p.L393L 0.27 TCGA-W3-AA1V-06 7 103050873 103050873 C T SLC26A5 Missense_Mutation p.V232I 0.56 tolerated(0.66) benign(0.159) TCGA-W3-AA1V-06 7 103126650 103126650 C T RELN Missense_Mutation p.R3326Q 0.27 tolerated(0.2) benign(0.281) TCGA-W3-AA1V-06 7 103136328 103136328 C T RELN Missense_Mutation p.E3071K 0.48 tolerated(0.1) benign(0.338) TCGA-W3-AA1V-06 7 103143594 103143594 C T RELN Nonsense_Mutation p.W2786* 0.49 TCGA-W3-AA1V-06 7 103180790 103180790 G A RELN Nonsense_Mutation p.Q2262* 0.35 TCGA-W3-AA1V-06 7 103202157 103202157 C T RELN Splice_Site p.X1784_splice 0.32 TCGA-W3-AA1V-06 7 103275889 103275889 G A RELN Silent p.L816L 0.21 TCGA-W3-AA1V-06 7 103301943 103301943 C T RELN Missense_Mutation p.E441K 0.47 tolerated(0.46) probably_damaging(0.98) TCGA-W3-AA1V-06 7 106508520 106508520 G A PIK3CG Missense_Mutation p.E172K 0.42 deleterious(0) probably_damaging(0.961) TCGA-W3-AA1V-06 7 106797669 106797669 C T PRKAR2B Silent p.I341I 0.46 TCGA-W3-AA1V-06 7 107355888 107355888 C T SLC26A4 Silent p.S780S 0.31 TCGA-W3-AA1V-06 7 107746966 107746966 G A LAMB4 Missense_Mutation p.P215S 0.24 deleterious(0.03) benign(0.332) TCGA-W3-AA1V-06 7 108204591 108204591 G A THAP5 3'UTR 0.38 TCGA-W3-AA1V-06 7 110763534 110763534 G A LRRN3 Missense_Mutation p.E236K 0.38 tolerated(0.08) benign(0.174) TCGA-W3-AA1V-06 7 110764992 110764992 A T LRRN3 3'UTR 0.36 TCGA-W3-AA1V-06 7 111430569 111430569 G A DOCK4 Missense_Mutation p.P1087S 0.24 tolerated(0.05) possibly_damaging(0.78) TCGA-W3-AA1V-06 7 111624414 111624414 C T DOCK4 Missense_Mutation p.E166K 0.53 tolerated(0.07) possibly_damaging(0.455) TCGA-W3-AA1V-06 7 113517954 113517954 C T PPP1R3A Missense_Mutation p.E1065K 0.17 deleterious(0.03) benign(0.147) TCGA-W3-AA1V-06 7 113518205 113518205 C T PPP1R3A Missense_Mutation p.G981E 0.28 tolerated(0.84) benign(0.012) TCGA-W3-AA1V-06 7 113518839 113518839 C T PPP1R3A Missense_Mutation p.E770K 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-W3-AA1V-06 7 114329959 114329959 C T FOXP2 Missense_Mutation p.P734L 0.20 tolerated(0.81) benign(0.001) TCGA-W3-AA1V-06 7 11446968 11446968 G A THSD7A Missense_Mutation p.P1294L 0.18 tolerated(0.12) benign(0.102) TCGA-W3-AA1V-06 7 11514176 11514176 A G THSD7A Silent p.N679N 0.60 TCGA-W3-AA1V-06 7 115580660 115580660 G A TFEC Missense_Mutation p.S330F 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 116411614 116411614 C T MET Silent p.F949F 0.46 TCGA-W3-AA1V-06 7 11675876 11675876 C T THSD7A Silent p.K301K 0.28 TCGA-W3-AA1V-06 7 116769878 116769878 A T ST7 Missense_Mutation p.L142F 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 7 117171065 117171065 T A CFTR Missense_Mutation p.L129H 0.37 deleterious(0) probably_damaging(0.962) TCGA-W3-AA1V-06 7 117175431 117175431 C T CFTR Nonsense_Mutation p.Q237* 0.24 TCGA-W3-AA1V-06 7 117431614 117431614 G A CTTNBP2 Missense_Mutation p.P546S 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 119914655 119914655 C T KCND2 5'UTR 0.51 TCGA-W3-AA1V-06 7 119914779 119914779 G A KCND2 Silent p.P31P 0.24 TCGA-W3-AA1V-06 7 119915482 119915482 G A KCND2 Missense_Mutation p.D266N 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 120387740 120387740 C T KCND2 Missense_Mutation p.S574F 0.36 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-W3-AA1V-06 7 120655878 120655878 C T CPED1 Silent p.L137L 0.55 TCGA-W3-AA1V-06 7 120876795 120876795 G A CPED1 Missense_Mutation p.E695K 0.17 tolerated(0.1) benign(0.018) TCGA-W3-AA1V-06 7 120906856 120906856 T C CPED1 Missense_Mutation p.L876S 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 7 121701322 121701322 C T PTPRZ1 3'UTR 0.55 TCGA-W3-AA1V-06 7 121944347 121944347 G A FEZF1 Missense_Mutation p.P49S 0.44 deleterious_low_confidence(0.03) benign(0.265) TCGA-W3-AA1V-06 7 122342343 122342343 C T RNF148 Missense_Mutation p.M154I 0.22 deleterious(0) probably_damaging(0.97) TCGA-W3-AA1V-06 7 122635359 122635359 G A TAS2R16 Silent p.F110F 0.38 TCGA-W3-AA1V-06 7 12263888 12263888 A C TMEM106B Silent p.L106L 0.36 TCGA-W3-AA1V-06 7 12263892 12263892 C T TMEM106B Missense_Mutation p.L108F 0.34 deleterious(0.02) possibly_damaging(0.549) TCGA-W3-AA1V-06 7 123264747 123264747 C G ASB15 Missense_Mutation p.I192M 0.43 tolerated(0.23) benign(0.159) TCGA-W3-AA1V-06 7 123269039 123269039 G A ASB15 Missense_Mutation p.G331S 0.26 deleterious(0) possibly_damaging(0.84) TCGA-W3-AA1V-06 7 123276927 123276927 A T ASB15 Missense_Mutation p.K553N 0.29 deleterious(0.01) benign(0.04) TCGA-W3-AA1V-06 7 123302549 123302549 C A LMOD2 Missense_Mutation p.F303L 0.27 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 7 123516831 123516831 G A HYAL4 Silent p.Q356Q 0.45 TCGA-W3-AA1V-06 7 123594182 123594182 G A SPAM1 Silent p.E186E 0.11 TCGA-W3-AA1V-06 7 123594243 123594243 G A SPAM1 Missense_Mutation p.G207R 0.42 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 7 123600079 123600079 C A SPAM1 Intron 0.18 TCGA-W3-AA1V-06 7 123600080 123600080 T C SPAM1 Intron 0.19 TCGA-W3-AA1V-06 7 126086134 126086134 G A GRM8 Intron 0.20 TCGA-W3-AA1V-06 7 126542691 126542691 C T GRM8 Missense_Mutation p.R354Q 0.24 tolerated(0.17) possibly_damaging(0.794) TCGA-W3-AA1V-06 7 126746594 126746594 C T GRM8 Missense_Mutation p.G228D 0.13 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 12680066 12680066 G A SCIN Missense_Mutation p.G502E 0.48 tolerated(0.07) benign(0.007) TCGA-W3-AA1V-06 7 127223273 127223273 C T GCC1 Missense_Mutation p.E375K 0.47 deleterious(0.03) possibly_damaging(0.584) TCGA-W3-AA1V-06 7 127894739 127894739 G A LEP Missense_Mutation p.E143K 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-W3-AA1V-06 7 128470994 128470994 C T FLNC Silent p.S101S 0.17 TCGA-W3-AA1V-06 7 128484251 128484251 C T FLNC Silent p.T1041T 0.35 TCGA-W3-AA1V-06 7 128846133 128846133 G A SMO Missense_Mutation p.G355S 0.27 tolerated(0.18) benign(0.193) TCGA-W3-AA1V-06 7 129091578 129091578 C T STRIP2 Silent p.Y133Y 0.56 TCGA-W3-AA1V-06 7 129095091 129095091 C T STRIP2 Missense_Mutation p.S238F 0.41 deleterious(0.02) benign(0.014) TCGA-W3-AA1V-06 7 129095092 129095092 C T STRIP2 Silent p.S238S 0.41 TCGA-W3-AA1V-06 7 130139715 130139715 G A MEST Splice_Site p.X179_splice 0.32 TCGA-W3-AA1V-06 7 131815330 131815330 G A PLXNA4 Missense_Mutation p.L1865F 0.22 deleterious(0.01) benign(0.372) TCGA-W3-AA1V-06 7 131883333 131883333 C T PLXNA4 Silent p.L883L 0.39 TCGA-W3-AA1V-06 7 133884051 133884051 G A LRGUK Missense_Mutation p.G542E 0.18 tolerated(0.14) possibly_damaging(0.836) TCGA-W3-AA1V-06 7 134217771 134217771 T A AKR1B10 Missense_Mutation p.F123I 0.24 tolerated(0.09) benign(0.001) TCGA-W3-AA1V-06 7 135282895 135282895 C T NUP205 Silent p.F738F 0.21 TCGA-W3-AA1V-06 7 135366254 135366254 C T SLC13A4 3'UTR 0.32 TCGA-W3-AA1V-06 7 135378904 135378904 C T SLC13A4 Missense_Mutation p.E367K 0.49 tolerated(1) benign(0.042) TCGA-W3-AA1V-06 7 135406245 135406245 G A SLC13A4 Silent p.I42I 0.58 TCGA-W3-AA1V-06 7 136700543 136700543 T A CHRM2 Missense_Mutation p.S311T 0.15 tolerated(0.41) benign(0.034) TCGA-W3-AA1V-06 7 136700645 136700645 G A CHRM2 Missense_Mutation p.E345K 0.34 tolerated(0.48) benign(0.247) TCGA-W3-AA1V-06 7 136700754 136700754 G A CHRM2 Missense_Mutation p.R381Q 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-W3-AA1V-06 7 137263056 137263056 T A DGKI Missense_Mutation p.K553I 0.40 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 137308281 137308281 G A DGKI Missense_Mutation p.S275F 0.25 deleterious(0) possibly_damaging(0.694) TCGA-W3-AA1V-06 7 138444605 138444605 G A ATP6V0A4 Silent p.I177I 0.21 TCGA-W3-AA1V-06 7 138447177 138447177 C T ATP6V0A4 Silent p.T140T 0.18 TCGA-W3-AA1V-06 7 138536969 138536969 C T KIAA1549 Missense_Mutation p.R1765K 0.24 deleterious(0) benign(0.338) TCGA-W3-AA1V-06 7 138546065 138546065 G A KIAA1549 Silent p.S1689S 0.55 TCGA-W3-AA1V-06 7 138597136 138597136 G A KIAA1549 Silent p.N983N 0.27 TCGA-W3-AA1V-06 7 139657561 139657561 G A TBXAS1 Missense_Mutation p.E320K 0.25 tolerated(0.12) benign(0.097) TCGA-W3-AA1V-06 7 13971268 13971268 G A ETV1 Missense_Mutation p.P221S 0.32 deleterious(0.02) possibly_damaging(0.7) TCGA-W3-AA1V-06 7 139724452 139724452 C T PARP12 Missense_Mutation p.E672K 0.16 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 7 13975410 13975410 C T ETV1 Silent p.P159P 0.21 TCGA-W3-AA1V-06 7 140154496 140154496 C T MKRN1 Missense_Mutation p.E424K 0.31 tolerated(0.09) possibly_damaging(0.606) TCGA-W3-AA1V-06 7 140481408 140481408 G A BRAF Missense_Mutation p.S467L 0.26 deleterious(0.01) possibly_damaging(0.756) TCGA-W3-AA1V-06 7 141418873 141418873 G A WEE2 Missense_Mutation p.R196K 0.38 tolerated(0.1) benign(0.101) TCGA-W3-AA1V-06 7 141418943 141418943 G A WEE2 Silent p.G219G 0.20 TCGA-W3-AA1V-06 7 141619380 141619380 G A OR9A4 Silent p.R235R 0.21 TCGA-W3-AA1V-06 7 141643757 141643757 C T CLEC5A Silent p.Q49Q 0.55 TCGA-W3-AA1V-06 7 141672872 141672872 G A TAS2R38 Silent p.F206F 0.20 TCGA-W3-AA1V-06 7 141673385 141673385 G A TAS2R38 Silent p.F35F 0.29 TCGA-W3-AA1V-06 7 141754560 141754560 G A MGAM Missense_Mutation p.D1056N 0.24 deleterious(0.01) possibly_damaging(0.771) TCGA-W3-AA1V-06 7 141758086 141758086 C T MGAM Silent p.I1259I 0.28 TCGA-W3-AA1V-06 7 141760157 141760157 G A MGAM Nonsense_Mutation p.W1369* 0.25 TCGA-W3-AA1V-06 7 141794428 141794428 G A MGAM Missense_Mutation p.E1543K 0.49 deleterious(0) probably_damaging(0.945) TCGA-W3-AA1V-06 7 141794589 141794589 G A MGAM Missense_Mutation p.E1566K 0.46 deleterious(0.02) probably_damaging(0.919) TCGA-W3-AA1V-06 7 141805626 141805626 G A MGAM Missense_Mutation p.D1837N 0.31 tolerated(0.33) benign(0.001) TCGA-W3-AA1V-06 7 141896514 141896514 C T RP11-1220K2.2 Silent p.I1510I 0.18 TCGA-W3-AA1V-06 7 141896554 141896554 C T RP11-1220K2.2 Missense_Mutation p.R1524C 0.27 probably_damaging(1) TCGA-W3-AA1V-06 7 142008598 142008598 C T TRBV3-1 Missense_Mutation p.S24F 0.20 tolerated(0.12) benign(0.012) TCGA-W3-AA1V-06 7 142008704 142008704 G A TRBV3-1 Silent p.K59K 0.21 TCGA-W3-AA1V-06 7 142013199 142013199 C T TRBV4-1 Silent p.P18P 0.27 TCGA-W3-AA1V-06 7 142013464 142013464 C T TRBV4-1 Silent p.L107L 0.19 TCGA-W3-AA1V-06 7 142020942 142020942 G A TRBV5-1 Missense_Mutation p.G17S 0.50 deleterious(0.03) possibly_damaging(0.696) TCGA-W3-AA1V-06 7 142032257 142032257 C T TRBV7-1 Missense_Mutation p.S26F 0.52 tolerated(0.15) benign(0.029) TCGA-W3-AA1V-06 7 142045333 142045333 C T TRBV4-2 5'UTR 0.23 TCGA-W3-AA1V-06 7 142045734 142045734 C T TRBV4-2 Missense_Mutation p.P88S 0.12 tolerated(0.3) benign(0.31) TCGA-W3-AA1V-06 7 142131862 142131862 G A TRBV5-6 Missense_Mutation p.L6F 0.19 tolerated(0.12) possibly_damaging(0.824) TCGA-W3-AA1V-06 7 142143651 142143651 G A TRBV6-7 3'Flank 0.20 TCGA-W3-AA1V-06 7 142162137 142162137 C T TRBV6-6 Missense_Mutation p.M46I 0.52 tolerated(0.06) benign(0.187) TCGA-W3-AA1V-06 7 142168892 142168892 C T TRBV5-4 5'UTR 0.25 TCGA-W3-AA1V-06 7 142224229 142224229 G C TRBV11-1 Silent p.L13L 0.42 TCGA-W3-AA1V-06 7 142364595 142364595 G A TRBV24-1 Missense_Mutation p.G77E 0.57 deleterious(0.03) probably_damaging(0.942) TCGA-W3-AA1V-06 7 142448089 142448089 C T TRBV29-1 5'UTR 0.50 TCGA-W3-AA1V-06 7 142448451 142448451 C T TRBV29-1 Silent p.F15F 0.25 TCGA-W3-AA1V-06 7 142566293 142566293 G A EPHB6 Silent p.R694R 0.30 TCGA-W3-AA1V-06 7 142622816 142622816 C T TRPV5 Silent p.Q310Q 0.54 TCGA-W3-AA1V-06 7 142630488 142630488 C T TRPV5 Silent p.L23L 0.14 TCGA-W3-AA1V-06 7 142643354 142643354 G A KEL Silent p.F418F 0.21 TCGA-W3-AA1V-06 7 142658142 142658142 G A KEL Silent p.A91A 0.43 TCGA-W3-AA1V-06 7 142724183 142724183 G A OR9A2 Missense_Mutation p.L13F 0.25 deleterious(0) probably_damaging(0.938) TCGA-W3-AA1V-06 7 142749631 142749631 C T OR6V1 Missense_Mutation p.S65F 0.51 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 7 142749792 142749792 G A OR6V1 Missense_Mutation p.D119N 0.56 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 142960588 142960588 C T GSTK1 5'UTR 0.20 TCGA-W3-AA1V-06 7 142960590 142960590 C T GSTK1 5'UTR 0.19 TCGA-W3-AA1V-06 7 143047476 143047476 G A CLCN1 Nonsense_Mutation p.W805* 0.21 TCGA-W3-AA1V-06 7 143141025 143141025 C T TAS2R60 Silent p.F160F 0.27 TCGA-W3-AA1V-06 7 143453377 143453377 C T CTAGE6 Missense_Mutation p.E459K 0.16 deleterious(0.05) benign(0.233) TCGA-W3-AA1V-06 7 143453606 143453606 C T CTAGE6 Silent p.Q382Q 0.12 TCGA-W3-AA1V-06 7 143632416 143632416 T C OR2F2 Missense_Mutation p.F31L 0.27 deleterious(0.04) benign(0.005) TCGA-W3-AA1V-06 7 143633015 143633015 C T OR2F2 Silent p.S230S 0.20 TCGA-W3-AA1V-06 7 143657239 143657239 T A OR2F1 Missense_Mutation p.M59K 0.22 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1V-06 7 143657549 143657549 C T OR2F1 Silent p.I162I 0.18 TCGA-W3-AA1V-06 7 143657606 143657606 C T OR2F1 Silent p.L181L 0.48 TCGA-W3-AA1V-06 7 143657607 143657607 C T OR2F1 Silent p.L182L 0.24 TCGA-W3-AA1V-06 7 143701182 143701182 C T OR6B1 Silent p.F31F 0.26 TCGA-W3-AA1V-06 7 143701854 143701854 C T OR6B1 Silent p.F255F 0.27 TCGA-W3-AA1V-06 7 143748145 143748145 C T OR2A5 Silent p.S217S 0.23 TCGA-W3-AA1V-06 7 143771362 143771362 C T OR2A25 Missense_Mutation p.P17L 0.71 tolerated(0.38) benign(0.038) TCGA-W3-AA1V-06 7 143771390 143771390 C T OR2A25 Silent p.L26L 0.20 TCGA-W3-AA1V-06 7 143771954 143771954 A T OR2A25 Silent p.V214V 0.29 TCGA-W3-AA1V-06 7 143806887 143806887 C T OR2A2 Missense_Mutation p.S71F 0.22 deleterious(0.04) benign(0.041) TCGA-W3-AA1V-06 7 143807476 143807476 G A OR2A2 Silent p.E267E 0.16 TCGA-W3-AA1V-06 7 143826508 143826508 C T OR2A14 Silent p.F101F 0.25 TCGA-W3-AA1V-06 7 143827101 143827101 C T OR2A14 Missense_Mutation p.A299V 0.20 deleterious(0.01) benign(0.27) TCGA-W3-AA1V-06 7 143884330 143884330 C T ARHGEF35 Missense_Mutation p.D383N 0.69 tolerated(0.14) possibly_damaging(0.484) TCGA-W3-AA1V-06 7 143955925 143955925 G A OR2A7 Missense_Mutation p.P266L 0.14 tolerated(0.06) benign(0.021) TCGA-W3-AA1V-06 7 143956646 143956646 G A OR2A7 Missense_Mutation p.L26F 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1V-06 7 144070336 144070336 G A ARHGEF5 Missense_Mutation p.E1367K 0.30 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 7 147092746 147092746 C T CNTNAP2 Missense_Mutation p.P515L 0.23 tolerated(0.25) benign(0.008) TCGA-W3-AA1V-06 7 14733798 14733798 C T DGKB Missense_Mutation p.E205K 0.38 tolerated(0.1) possibly_damaging(0.596) TCGA-W3-AA1V-06 7 147869402 147869402 G A CNTNAP2 Missense_Mutation p.D948N 0.14 deleterious(0.04) benign(0.3) TCGA-W3-AA1V-06 7 148106528 148106528 G A CNTNAP2 Missense_Mutation p.R1254K 0.10 tolerated(0.63) benign(0.002) TCGA-W3-AA1V-06 7 148112601 148112601 G A CNTNAP2 Missense_Mutation p.E1297K 0.50 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1V-06 7 148288099 148288099 C A C7orf33 Missense_Mutation p.L28M 0.40 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-W3-AA1V-06 7 148497660 148497660 A G CUL1 Missense_Mutation p.S773G 0.21 tolerated(0.46) benign(0.13) TCGA-W3-AA1V-06 7 148769064 148769064 G A ZNF786 Missense_Mutation p.P267L 0.54 deleterious(0.01) possibly_damaging(0.489) TCGA-W3-AA1V-06 7 148769065 148769065 G A ZNF786 Missense_Mutation p.P267S 0.54 deleterious(0.03) benign(0.051) TCGA-W3-AA1V-06 7 149317042 149317042 G A ZNF767 RNA 0.39 TCGA-W3-AA1V-06 7 149318569 149318569 C T ZNF767 RNA 0.48 TCGA-W3-AA1V-06 7 149463226 149463226 A T ZNF467 Missense_Mutation p.F122Y 0.41 tolerated(0.24) benign(0.332) TCGA-W3-AA1V-06 7 149514777 149514777 C T SSPO RNA 0.33 TCGA-W3-AA1V-06 7 150028185 150028185 C T ZBED6CL Missense_Mutation p.P231L 0.22 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-W3-AA1V-06 7 150094068 150094068 G A ZNF775 Missense_Mutation p.E167K 0.24 deleterious(0.05) benign(0.165) TCGA-W3-AA1V-06 7 150171179 150171179 G A GIMAP8 Silent p.G254G 0.16 TCGA-W3-AA1V-06 7 150217597 150217597 G A GIMAP7 Missense_Mutation p.E179K 0.46 deleterious(0.04) possibly_damaging(0.768) TCGA-W3-AA1V-06 7 150217801 150217801 G A GIMAP7 Missense_Mutation p.E247K 0.68 tolerated(0.12) benign(0.077) TCGA-W3-AA1V-06 7 150269240 150269240 A T GIMAP4 Missense_Mutation p.N28Y 0.20 deleterious(0.03) benign(0.071) TCGA-W3-AA1V-06 7 150269327 150269327 C T GIMAP4 Missense_Mutation p.H57Y 0.25 tolerated(0.71) possibly_damaging(0.699) TCGA-W3-AA1V-06 7 150327167 150327167 G A GIMAP6 Missense_Mutation p.P22S 0.47 tolerated(0.17) benign(0.005) TCGA-W3-AA1V-06 7 150389542 150389542 C T GIMAP2 Silent p.T56T 0.46 TCGA-W3-AA1V-06 7 150417734 150417734 G A GIMAP1 Silent p.E214E 0.25 TCGA-W3-AA1V-06 7 150439567 150439567 C T GIMAP5 Silent p.L114L 0.26 TCGA-W3-AA1V-06 7 150555056 150555056 C T AOC1 Missense_Mutation p.R500C 0.47 deleterious(0) probably_damaging(0.962) TCGA-W3-AA1V-06 7 150558114 150558114 C T AOC1 Silent p.S691S 0.14 TCGA-W3-AA1V-06 7 150747313 150747313 G A ASIC3 Missense_Mutation p.E219K 0.26 deleterious(0) benign(0.318) TCGA-W3-AA1V-06 7 150752427 150752427 G A CDK5 Missense_Mutation p.L173F 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 150752428 150752428 G A CDK5 Silent p.V172V 0.20 TCGA-W3-AA1V-06 7 150768583 150768583 C T SLC4A2 Silent p.P694P 0.29 TCGA-W3-AA1V-06 7 151133315 151133315 C T CRYGN Missense_Mutation p.G123S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1V-06 7 151135105 151135105 C T CRYGN Missense_Mutation p.G83S 0.23 tolerated(0.57) possibly_damaging(0.458) TCGA-W3-AA1V-06 7 151135106 151135106 C T CRYGN Missense_Mutation p.M82I 0.19 tolerated(0.07) benign(0.088) TCGA-W3-AA1V-06 7 1512778 1512778 G A INTS1 Silent p.S2000S 0.48 TCGA-W3-AA1V-06 7 151664474 151664474 C T GALNTL5 Missense_Mutation p.P48L 0.42 tolerated(0.71) benign(0) TCGA-W3-AA1V-06 7 151684285 151684285 C T GALNTL5 Missense_Mutation p.R193W 0.43 tolerated(0.07) probably_damaging(1) TCGA-W3-AA1V-06 7 151704932 151704932 G A GALNTL5 Missense_Mutation p.G310E 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 1517514 1517514 G A INTS1 Silent p.F1563F 0.37 TCGA-W3-AA1V-06 7 1517568 1517568 G C INTS1 Silent p.L1545L 0.17 TCGA-W3-AA1V-06 7 151860159 151860159 G A KMT2C Silent p.F3501F 0.19 TCGA-W3-AA1V-06 7 151878911 151878911 G A KMT2C Missense_Mutation p.P2012S 0.25 benign(0.222) TCGA-W3-AA1V-06 7 152520487 152520487 C T ACTR3B Missense_Mutation p.P249S 0.26 tolerated(0.25) benign(0.035) TCGA-W3-AA1V-06 7 152520574 152520574 G A ACTR3B Missense_Mutation p.G278R 0.25 deleterious(0) probably_damaging(0.99) TCGA-W3-AA1V-06 7 152520575 152520575 G A ACTR3B Missense_Mutation p.G278E 0.25 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 7 152549252 152549252 C T ACTR3B Silent p.F331F 0.62 TCGA-W3-AA1V-06 7 1542545 1542545 G A INTS1 Missense_Mutation p.P114L 0.50 tolerated(0.2) benign(0.118) TCGA-W3-AA1V-06 7 1542546 1542546 G A INTS1 Missense_Mutation p.P114S 0.51 tolerated(0.06) benign(0.183) TCGA-W3-AA1V-06 7 154564572 154564572 C T DPP6 Silent p.P352P 0.19 TCGA-W3-AA1V-06 7 15458268 15458268 G A AGMO Missense_Mutation p.S175F 0.35 tolerated(0.08) benign(0.009) TCGA-W3-AA1V-06 7 157174965 157174965 G A DNAJB6 Silent p.G124G 0.44 TCGA-W3-AA1V-06 7 157475540 157475540 G A PTPRN2 Silent p.I626I 0.30 TCGA-W3-AA1V-06 7 158424248 158424248 C T NCAPG2 3'UTR 0.22 TCGA-W3-AA1V-06 7 158424249 158424249 C T NCAPG2 3'UTR 0.22 TCGA-W3-AA1V-06 7 158439226 158439226 T A NCAPG2 Silent p.P1035P 0.35 TCGA-W3-AA1V-06 7 158835849 158835849 C T VIPR2 Silent p.R158R 0.37 TCGA-W3-AA1V-06 7 18066754 18066754 G A PRPS1L1 Missense_Mutation p.L218F 0.44 deleterious(0.02) benign(0.237) TCGA-W3-AA1V-06 7 18687584 18687584 G A HDAC9 Silent p.L404L 0.19 TCGA-W3-AA1V-06 7 18705844 18705844 G A HDAC9 Silent p.S492S 0.47 TCGA-W3-AA1V-06 7 20441377 20441377 T G ITGB8 Missense_Mutation p.C439G 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.57 tolerated(0.11) benign(0.16) TCGA-W3-AA1V-06 7 21516729 21516729 C T SP4 Nonsense_Mutation p.Q571* 0.41 TCGA-W3-AA1V-06 7 21628246 21628246 C A DNAH11 Silent p.L655L 0.18 TCGA-W3-AA1V-06 7 21628247 21628247 C T DNAH11 Missense_Mutation p.R656C 0.21 possibly_damaging(0.594) TCGA-W3-AA1V-06 7 23221769 23221769 A G NUPL2 Missense_Mutation p.H22R 0.73 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 7 23547101 23547101 A T TRA2A Missense_Mutation p.D193E 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-W3-AA1V-06 7 23682575 23682575 C T CCDC126 Silent p.V88V 0.34 TCGA-W3-AA1V-06 7 23768837 23768837 C T STK31 Missense_Mutation p.P151L 0.37 tolerated(0.16) benign(0.062) TCGA-W3-AA1V-06 7 23827599 23827599 G A STK31 Missense_Mutation p.E830K 0.18 deleterious(0) probably_damaging(0.951) TCGA-W3-AA1V-06 7 24720035 24720035 G A MPP6 Missense_Mutation p.E448K 0.66 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 7 25176131 25176131 G A C7orf31 Silent p.L411L 0.34 TCGA-W3-AA1V-06 7 2579435 2579435 G T BRAT1 Missense_Mutation p.P495T 0.31 tolerated(0.46) benign(0.05) TCGA-W3-AA1V-06 7 2770854 2770854 G A GNA12 Silent p.T369T 0.35 TCGA-W3-AA1V-06 7 28758435 28758435 C A CREB5 Missense_Mutation p.A177D 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1V-06 7 29112028 29112028 C T CPVL Silent p.G207G 0.83 TCGA-W3-AA1V-06 7 2946183 2946183 C T CARD11 3'UTR 0.30 TCGA-W3-AA1V-06 7 29915482 29915482 C T WIPF3 Missense_Mutation p.P43S 0.55 tolerated_low_confidence(0.18) possibly_damaging(0.539) TCGA-W3-AA1V-06 7 31614170 31614170 G A CCDC129 Missense_Mutation p.E164K 0.67 tolerated(0.05) probably_damaging(0.909) TCGA-W3-AA1V-06 7 31867948 31867948 G A PDE1C Silent p.L475L 0.22 TCGA-W3-AA1V-06 7 32997387 32997387 G A FKBP9 Missense_Mutation p.G68S 0.67 deleterious(0) probably_damaging(0.918) TCGA-W3-AA1V-06 7 32997388 32997388 G A FKBP9 Missense_Mutation p.G68D 0.70 deleterious(0.01) probably_damaging(0.956) TCGA-W3-AA1V-06 7 33573571 33573571 G A BBS9 Nonsense_Mutation p.W768* 0.27 TCGA-W3-AA1V-06 7 34182949 34182949 G A BMPER Nonsense_Mutation p.W618* 0.26 TCGA-W3-AA1V-06 7 34888192 34888192 C T NPSR1 Silent p.I314I 0.74 TCGA-W3-AA1V-06 7 36429733 36429733 G A KIAA0895 5'UTR 0.73 TCGA-W3-AA1V-06 7 36450224 36450224 A G ANLN Missense_Mutation p.I400V 0.33 tolerated(1) benign(0.003) TCGA-W3-AA1V-06 7 36458904 36458904 C T ANLN Missense_Mutation p.S562L 0.76 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 7 36763744 36763744 G A AOAH Missense_Mutation p.P4S 0.80 tolerated_low_confidence(0.56) benign(0.001) TCGA-W3-AA1V-06 7 36763745 36763745 G A AOAH Silent p.S3S 0.80 TCGA-W3-AA1V-06 7 39504082 39504082 C T POU6F2 Missense_Mutation p.H625Y 0.50 tolerated(0.9) unknown(0) TCGA-W3-AA1V-06 7 4056821 4056821 T G SDK1 Silent p.L813L 0.48 TCGA-W3-AA1V-06 7 4152972 4152972 T C SDK1 Silent p.S1162S 0.19 TCGA-W3-AA1V-06 7 42005649 42005649 G A GLI3 Missense_Mutation p.P1008S 0.27 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 7 43484782 43484782 G A HECW1 Missense_Mutation p.E671K 0.30 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-W3-AA1V-06 7 43508690 43508690 G A HECW1 Missense_Mutation p.D1029N 0.33 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 7 44042238 44042238 G A SPDYE1 Silent p.R103R 0.26 TCGA-W3-AA1V-06 7 44044690 44044690 C T SPDYE1 Intron 0.37 TCGA-W3-AA1V-06 7 44054276 44054276 G A SPDYE1 3'Flank 0.41 TCGA-W3-AA1V-06 7 44260309 44260309 C T CAMK2B Silent p.A558A 0.45 TCGA-W3-AA1V-06 7 44555526 44555526 G A NPC1L1 Silent p.I1251I 0.43 TCGA-W3-AA1V-06 7 44573406 44573406 C T NPC1L1 Missense_Mutation p.R738Q 0.69 deleterious(0.02) possibly_damaging(0.477) TCGA-W3-AA1V-06 7 47342680 47342680 G A TNS3 Missense_Mutation p.R1109C 0.31 deleterious(0) benign(0.14) TCGA-W3-AA1V-06 7 47342939 47342939 G A TNS3 Silent p.F1022F 0.33 TCGA-W3-AA1V-06 7 47847981 47847981 G A PKD1L1 Missense_Mutation p.S2564F 0.27 deleterious(0.04) benign(0.175) TCGA-W3-AA1V-06 7 47886516 47886516 G A PKD1L1 Missense_Mutation p.S1705F 0.30 tolerated(0.71) possibly_damaging(0.564) TCGA-W3-AA1V-06 7 4830378 4830378 C T AP5Z1 Silent p.F671F 0.44 TCGA-W3-AA1V-06 7 48311901 48311901 G A ABCA13 Missense_Mutation p.D880N 0.66 benign(0.015) TCGA-W3-AA1V-06 7 48318192 48318192 A T ABCA13 Missense_Mutation p.R2467S 0.38 benign(0.367) TCGA-W3-AA1V-06 7 4917488 4917488 C T RADIL Missense_Mutation p.E95K 0.20 deleterious(0) probably_damaging(0.97) TCGA-W3-AA1V-06 7 4965144 4965144 G A MMD2 Missense_Mutation p.P23S 0.46 tolerated(0.1) benign(0.04) TCGA-W3-AA1V-06 7 5104902 5104902 T C RBAK Silent p.S605S 0.29 TCGA-W3-AA1V-06 7 51287625 51287625 G A COBL Missense_Mutation p.R20C 0.89 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 7 5232780 5232780 C T WIPI2 Missense_Mutation p.L36F 0.29 tolerated_low_confidence(0.14) benign(0.004) TCGA-W3-AA1V-06 7 5257550 5257550 C T WIPI2 Intron 0.20 TCGA-W3-AA1V-06 7 53103890 53103890 G A POM121L12 Missense_Mutation p.E176K 0.40 tolerated(0.09) benign(0) TCGA-W3-AA1V-06 7 53104051 53104051 C T POM121L12 Silent p.F229F 0.47 TCGA-W3-AA1V-06 7 55752865 55752865 C T RNU6-389P 5'Flank 0.63 TCGA-W3-AA1V-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.89 TCGA-W3-AA1V-06 7 5643510 5643510 C T FSCN1 Silent p.F376F 0.23 TCGA-W3-AA1V-06 7 57188004 57188004 C T ZNF479 Missense_Mutation p.R373K 0.71 tolerated(0.35) probably_damaging(0.955) TCGA-W3-AA1V-06 7 57188066 57188066 G A ZNF479 Silent p.P352P 0.61 TCGA-W3-AA1V-06 7 57188244 57188244 C T ZNF479 Missense_Mutation p.G293E 0.35 tolerated(0.05) probably_damaging(1) TCGA-W3-AA1V-06 7 57188419 57188419 G A ZNF479 Missense_Mutation p.H235Y 0.47 tolerated(0.06) probably_damaging(0.955) TCGA-W3-AA1V-06 7 57528471 57528471 G A ZNF716 Missense_Mutation p.G102S 0.37 tolerated(0.46) benign(0.426) TCGA-W3-AA1V-06 7 5965339 5965339 G A RSPH10B 3'Flank 0.16 TCGA-W3-AA1V-06 7 6064288 6064288 A T EIF2AK1 3'UTR 0.30 TCGA-W3-AA1V-06 7 63726773 63726773 C T ZNF679 Silent p.T254T 0.13 TCGA-W3-AA1V-06 7 64167288 64167288 C A ZNF107 Missense_Mutation p.H202Q 0.11 tolerated(0.48) benign(0.014) TCGA-W3-AA1V-06 7 64291840 64291840 C T ZNF138 Missense_Mutation p.R48C 0.23 deleterious(0.01) benign(0.045) TCGA-W3-AA1V-06 7 64437307 64437307 G A ZNF117 3'UTR 0.47 TCGA-W3-AA1V-06 7 64863325 64863325 C T ZNF92 Silent p.L100L 0.23 TCGA-W3-AA1V-06 7 65426041 65426041 C T GUSB Missense_Mutation p.R600K 0.40 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 7 65444796 65444796 G A GUSB Nonsense_Mutation p.R167* 0.40 TCGA-W3-AA1V-06 7 6628428 6628428 C T ZDHHC4 Missense_Mutation p.P308S 0.28 tolerated(0.19) benign(0.01) TCGA-W3-AA1V-06 7 6631381 6631381 C T C7orf26 Silent p.F99F 0.52 TCGA-W3-AA1V-06 7 6639567 6639567 C T C7orf26 Silent p.L230L 0.32 TCGA-W3-AA1V-06 7 66660263 66660263 C T TYW1 Missense_Mutation p.P639L 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-W3-AA1V-06 7 66660264 66660264 C T TYW1 Silent p.P639P 0.37 TCGA-W3-AA1V-06 7 6731658 6731658 G A ZNF12 Silent p.S305S 0.31 TCGA-W3-AA1V-06 7 6820495 6820495 C T RSPH10B2 Missense_Mutation p.R529C 0.10 tolerated(0.19) benign(0.409) TCGA-W3-AA1V-06 7 70886062 70886062 G A WBSCR17 Nonsense_Mutation p.W311* 0.23 TCGA-W3-AA1V-06 7 71175835 71175835 C T WBSCR17 Silent p.N530N 0.22 TCGA-W3-AA1V-06 7 72409913 72409913 C T POM121 Missense_Mutation p.P204L 0.14 deleterious(0) possibly_damaging(0.903) TCGA-W3-AA1V-06 7 72658670 72658670 C T GTF2IRD2P1 RNA 0.12 TCGA-W3-AA1V-06 7 72718244 72718244 G A NSUN5 Missense_Mutation p.P306L 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 72734241 72734241 C T TRIM50 Missense_Mutation p.E134K 0.29 tolerated(0.15) probably_damaging(0.997) TCGA-W3-AA1V-06 7 72849607 72849607 C T FZD9 Missense_Mutation p.L424F 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1V-06 7 73245780 73245780 C T CLDN4 Silent p.L83L 0.30 TCGA-W3-AA1V-06 7 73604003 73604003 G A EIF4H Missense_Mutation p.G83E 0.16 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 7 73768299 73768299 C T CLIP2 Silent p.P256P 0.21 TCGA-W3-AA1V-06 7 73944094 73944094 C T GTF2IRD1 Missense_Mutation p.P406L 0.31 tolerated(0.06) probably_damaging(0.962) TCGA-W3-AA1V-06 7 74146987 74146987 C T GTF2I Missense_Mutation p.R430C 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 7472159 7472159 A G COL28A1 Missense_Mutation p.L648S 0.17 tolerated(0.23) benign(0.021) TCGA-W3-AA1V-06 7 75517637 75517637 C T RHBDD2 Silent p.S355S 0.33 TCGA-W3-AA1V-06 7 76024575 76024575 G A SRCRB4D Missense_Mutation p.P314L 0.21 tolerated(0.14) benign(0.008) TCGA-W3-AA1V-06 7 76828861 76828861 T A FGL2 Missense_Mutation p.N84Y 0.15 deleterious(0.01) benign(0.092) TCGA-W3-AA1V-06 7 76908153 76908153 C T CCDC146 Missense_Mutation p.R509W 0.16 deleterious(0.01) possibly_damaging(0.764) TCGA-W3-AA1V-06 7 76916225 76916225 G A CCDC146 Missense_Mutation p.M753I 0.30 tolerated(0.09) benign(0.005) TCGA-W3-AA1V-06 7 77268028 77268028 C T PTPN12 Missense_Mutation p.P754L 0.28 tolerated_low_confidence(0.12) benign(0.004) TCGA-W3-AA1V-06 7 77789353 77789353 C T MAGI2 Missense_Mutation p.G945E 0.16 deleterious(0) possibly_damaging(0.777) TCGA-W3-AA1V-06 7 77789354 77789354 C T MAGI2 Missense_Mutation p.G945R 0.16 deleterious(0) probably_damaging(0.917) TCGA-W3-AA1V-06 7 77885548 77885548 G A MAGI2 Missense_Mutation p.H587Y 0.30 tolerated(0.11) possibly_damaging(0.558) TCGA-W3-AA1V-06 7 8125855 8125855 C T GLCCI1 Missense_Mutation p.S444L 0.25 tolerated(0.25) probably_damaging(0.962) TCGA-W3-AA1V-06 7 82430887 82430887 C T PCLO Missense_Mutation p.G4985E 0.53 unknown(0) TCGA-W3-AA1V-06 7 82453632 82453632 G A PCLO Missense_Mutation p.S4839F 0.53 unknown(0) TCGA-W3-AA1V-06 7 82544590 82544590 G A PCLO Nonsense_Mutation p.Q4238* 0.14 TCGA-W3-AA1V-06 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.13 unknown(0) TCGA-W3-AA1V-06 7 82545434 82545434 C T PCLO Missense_Mutation p.M3956I 0.49 unknown(0) TCGA-W3-AA1V-06 7 82545615 82545615 G A PCLO Missense_Mutation p.P3896L 0.55 unknown(0) TCGA-W3-AA1V-06 7 82578911 82578911 G A PCLO Missense_Mutation p.P3665S 0.30 unknown(0) TCGA-W3-AA1V-06 7 82580009 82580009 G A PCLO Silent p.L3299L 0.55 TCGA-W3-AA1V-06 7 82580501 82580501 G A PCLO Missense_Mutation p.H3135Y 0.53 unknown(0) TCGA-W3-AA1V-06 7 8258122 8258122 C T ICA1 Missense_Mutation p.R131Q 0.34 tolerated(0.38) possibly_damaging(0.894) TCGA-W3-AA1V-06 7 82584405 82584405 T A PCLO Missense_Mutation p.Y1955F 0.34 unknown(0) TCGA-W3-AA1V-06 7 82585683 82585683 C T PCLO Missense_Mutation p.R1529Q 0.19 unknown(0) TCGA-W3-AA1V-06 7 82585836 82585836 G A PCLO Missense_Mutation p.T1478I 0.28 unknown(0) TCGA-W3-AA1V-06 7 82585837 82585837 T C PCLO Missense_Mutation p.T1478A 0.29 unknown(0) TCGA-W3-AA1V-06 7 82585844 82585844 C T PCLO Silent p.R1475R 0.11 TCGA-W3-AA1V-06 7 82586110 82586110 C T PCLO Missense_Mutation p.D1387N 0.53 unknown(0) TCGA-W3-AA1V-06 7 82595649 82595649 G A PCLO Missense_Mutation p.P1152L 0.57 unknown(0) TCGA-W3-AA1V-06 7 8268239 8268239 C T ICA1 Missense_Mutation p.R83K 0.16 deleterious(0.04) possibly_damaging(0.53) TCGA-W3-AA1V-06 7 82763878 82763878 C T PCLO Silent p.V996V 0.29 TCGA-W3-AA1V-06 7 82764450 82764450 A C PCLO Missense_Mutation p.F806V 0.25 unknown(0) TCGA-W3-AA1V-06 7 82764921 82764921 C T PCLO Missense_Mutation p.D649N 0.24 unknown(0) TCGA-W3-AA1V-06 7 82784370 82784370 G A PCLO Silent p.P529P 0.18 TCGA-W3-AA1V-06 7 83014632 83014632 C T SEMA3E Missense_Mutation p.G618E 0.51 tolerated(0.41) benign(0.019) TCGA-W3-AA1V-06 7 83277912 83277912 T G SEMA3E 5'UTR 0.30 TCGA-W3-AA1V-06 7 84629071 84629071 G A SEMA3D Silent p.I673I 0.49 TCGA-W3-AA1V-06 7 84666225 84666225 G A SEMA3D Missense_Mutation p.P391S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 86415769 86415769 G A GRM3 Missense_Mutation p.D221N 0.17 tolerated(0.92) probably_damaging(0.993) TCGA-W3-AA1V-06 7 86468876 86468876 C T GRM3 Silent p.F682F 0.45 TCGA-W3-AA1V-06 7 86493744 86493744 G A GRM3 3'UTR 0.28 TCGA-W3-AA1V-06 7 86493793 86493793 G A GRM3 3'UTR 0.25 TCGA-W3-AA1V-06 7 86556161 86556161 G A KIAA1324L Silent p.P387P 0.25 TCGA-W3-AA1V-06 7 86978384 86978384 C T CROT 5'UTR 0.23 TCGA-W3-AA1V-06 7 87760750 87760750 C T ADAM22 Missense_Mutation p.S331L 0.37 deleterious(0.01) possibly_damaging(0.798) TCGA-W3-AA1V-06 7 87782576 87782576 T C ADAM22 Silent p.N574N 0.27 TCGA-W3-AA1V-06 7 87808355 87808355 G A ADAM22 Silent p.K802K 0.61 TCGA-W3-AA1V-06 7 8790666 8790666 G A NXPH1 Missense_Mutation p.G28E 0.29 tolerated(0.21) benign(0.076) TCGA-W3-AA1V-06 7 89854787 89854787 G A STEAP2 Missense_Mutation p.E131K 0.48 deleterious(0.01) possibly_damaging(0.78) TCGA-W3-AA1V-06 7 89903401 89903401 C T C7orf63 Nonsense_Mutation p.Q321* 0.26 TCGA-W3-AA1V-06 7 90042813 90042813 C T CLDN12 3'UTR 0.36 TCGA-W3-AA1V-06 7 90377053 90377053 G A CDK14 Missense_Mutation p.E125K 0.29 deleterious(0.01) possibly_damaging(0.863) TCGA-W3-AA1V-06 7 91866995 91866995 G A KRIT1 Missense_Mutation p.P114L 0.26 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 7 92098548 92098548 C T ERVW-1 Missense_Mutation p.R383Q 0.26 tolerated(0.11) benign(0.429) TCGA-W3-AA1V-06 7 92730826 92730826 G A SAMD9 Missense_Mutation p.R1529C 0.17 deleterious(0) possibly_damaging(0.87) TCGA-W3-AA1V-06 7 92764235 92764235 C T SAMD9L Silent p.R350R 0.27 TCGA-W3-AA1V-06 7 93065339 93065339 G A CALCR Silent p.V392V 0.33 TCGA-W3-AA1V-06 7 93067530 93067530 G A CALCR Silent p.F319F 0.21 TCGA-W3-AA1V-06 7 93098065 93098065 G A CALCR Silent p.F179F 0.65 TCGA-W3-AA1V-06 7 93519946 93519946 G A TFPI2 Silent p.F15F 0.30 TCGA-W3-AA1V-06 7 93540094 93540094 C T GNGT1 Intron 0.25 TCGA-W3-AA1V-06 7 93623586 93623586 A G BET1 Silent p.L105L 0.17 TCGA-W3-AA1V-06 7 94042408 94042408 A G COL1A2 Missense_Mutation p.K506R 0.26 unknown(0) TCGA-W3-AA1V-06 7 94043021 94043021 G A COL1A2 Missense_Mutation p.G526E 0.27 unknown(0) TCGA-W3-AA1V-06 7 94052307 94052307 G A COL1A2 Silent p.G814G 0.27 TCGA-W3-AA1V-06 7 94293505 94293505 C T PEG10 Missense_Mutation p.H213Y 0.23 tolerated(0.11) benign(0.009) TCGA-W3-AA1V-06 7 94740638 94740638 C T PPP1R9A Missense_Mutation p.S488L 0.45 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 7 94898613 94898613 C T PPP1R9A Missense_Mutation p.P973L 0.56 tolerated(0.11) benign(0.007) TCGA-W3-AA1V-06 7 94919462 94919462 G A PPP1R9A Missense_Mutation p.M1324I 0.25 tolerated(0.09) benign(0.281) TCGA-W3-AA1V-06 7 94944803 94944803 C T PON1 Splice_Site p.X68_splice 0.24 TCGA-W3-AA1V-06 7 95217061 95217061 C T PDK4 Missense_Mutation p.G283E 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 7 95668643 95668643 T A DYNC1I1 Silent p.I490I 0.25 TCGA-W3-AA1V-06 7 96746920 96746920 A G ACN9 5'UTR 0.33 TCGA-W3-AA1V-06 7 97488657 97488657 G A ASNS Missense_Mutation p.L181F 0.38 tolerated(0.08) benign(0.143) TCGA-W3-AA1V-06 7 97614199 97614199 C T OCM2 3'UTR 0.33 TCGA-W3-AA1V-06 7 97614200 97614200 C T OCM2 3'UTR 0.33 TCGA-W3-AA1V-06 7 97846743 97846743 G A TECPR1 Missense_Mutation p.P1153S 0.38 tolerated_low_confidence(0.22) benign(0.003) TCGA-W3-AA1V-06 7 97862961 97862961 G A TECPR1 Missense_Mutation p.P482S 0.52 tolerated(0.12) benign(0.003) TCGA-W3-AA1V-06 7 98460924 98460924 G A TMEM130 Missense_Mutation p.A62V 0.28 tolerated(1) benign(0.002) TCGA-W3-AA1V-06 7 98565207 98565207 C T TRRAP Silent p.F2459F 0.25 TCGA-W3-AA1V-06 7 99015193 99015193 G T BUD31 Missense_Mutation p.R120L 0.23 deleterious(0.03) probably_damaging(0.966) TCGA-W3-AA1V-06 7 99129251 99129251 C T ZKSCAN5 Silent p.F633F 0.29 TCGA-W3-AA1V-06 7 99129880 99129880 C T ZKSCAN5 3'UTR 0.28 TCGA-W3-AA1V-06 7 99170990 99170990 C T ZNF655 Missense_Mutation p.T455I 0.22 tolerated(0.08) possibly_damaging(0.702) TCGA-W3-AA1V-06 7 99170991 99170991 C T ZNF655 Silent p.T455T 0.22 TCGA-W3-AA1V-06 7 99489900 99489900 C T TRIM4 Silent p.V463V 0.23 TCGA-W3-AA1V-06 7 99517047 99517047 G A TRIM4 5'UTR 0.75 TCGA-W3-AA1V-06 7 99699331 99699331 A T AP4M1 5'UTR 0.20 TCGA-W3-AA1V-06 7 99773896 99773896 C T GPC2 Missense_Mutation p.G87S 0.23 tolerated(0.42) benign(0.107) TCGA-W3-AA1V-06 7 99799426 99799426 G A STAG3 Silent p.L746L 0.16 TCGA-W3-AA1V-06 7 99956333 99956333 C T PILRB Missense_Mutation p.P29S 0.22 tolerated(0.72) probably_damaging(0.996) TCGA-W3-AA1V-06 7 99997485 99997485 C T PILRA Silent p.L289L 0.18 TCGA-W3-AA1V-06 8 100454764 100454764 C T VPS13B Missense_Mutation p.L1116F 0.19 deleterious(0.03) probably_damaging(0.944) TCGA-W3-AA1V-06 8 100479773 100479785 CTTGCTACGGGAC - VPS13B Frame_Shift_Del p.A1194Ifs*14 0.16 TCGA-W3-AA1V-06 8 101020642 101020642 C T RGS22 Nonsense_Mutation p.W774* 0.63 TCGA-W3-AA1V-06 8 101065132 101065132 G A RGS22 Silent p.L529L 0.38 TCGA-W3-AA1V-06 8 102570812 102570812 C T GRHL2 Silent p.I150I 0.19 TCGA-W3-AA1V-06 8 102631816 102631816 G A GRHL2 Missense_Mutation p.G383E 0.16 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 103305948 103305948 G A UBR5 Missense_Mutation p.R1492C 0.27 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1V-06 8 103305949 103305949 A G UBR5 Silent p.A1491A 0.26 TCGA-W3-AA1V-06 8 104065040 104065040 C T ATP6V1C1 Nonsense_Mutation p.R155* 0.14 TCGA-W3-AA1V-06 8 104413805 104413805 G A SLC25A32 Missense_Mutation p.R251C 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 10465331 10465331 C T RP1L1 Missense_Mutation p.E2093K 0.34 unknown(0) TCGA-W3-AA1V-06 8 10466875 10466875 T C RP1L1 Missense_Mutation p.K1578R 0.38 unknown(0) TCGA-W3-AA1V-06 8 10480585 10480585 C T RP1L1 Missense_Mutation p.D43N 0.38 probably_damaging(1) TCGA-W3-AA1V-06 8 105025670 105025670 G A RIMS2 Silent p.R1015R 0.18 TCGA-W3-AA1V-06 8 105025671 105025671 G A RIMS2 Missense_Mutation p.D1016N 0.17 tolerated_low_confidence(0.64) benign(0.001) TCGA-W3-AA1V-06 8 105025846 105025846 C T RIMS2 Missense_Mutation p.S1074L 0.27 tolerated_low_confidence(0.21) benign(0.146) TCGA-W3-AA1V-06 8 105260987 105260987 G A RIMS2 Missense_Mutation p.G1179S 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 105367378 105367378 G A DCSTAMP Missense_Mutation p.E435K 0.37 tolerated(0.37) benign(0.007) TCGA-W3-AA1V-06 8 106814093 106814093 T A ZFPM2 Missense_Mutation p.L595M 0.24 deleterious(0.03) benign(0.125) TCGA-W3-AA1V-06 8 106814320 106814320 G A ZFPM2 Silent p.V670V 0.77 TCGA-W3-AA1V-06 8 106814351 106814351 G A ZFPM2 Missense_Mutation p.E681K 0.13 deleterious(0.02) benign(0.445) TCGA-W3-AA1V-06 8 10755610 10755610 C T XKR6 Missense_Mutation p.R593Q 0.29 tolerated(0.06) possibly_damaging(0.89) TCGA-W3-AA1V-06 8 10755789 10755789 G A XKR6 Silent p.I533I 0.70 TCGA-W3-AA1V-06 8 107773487 107773487 C T ABRA Silent p.R308R 0.13 TCGA-W3-AA1V-06 8 110100010 110100010 C T TRHR Missense_Mutation p.S90F 0.61 tolerated(0.17) benign(0.052) TCGA-W3-AA1V-06 8 110131504 110131504 G A TRHR Silent p.Q339Q 0.19 TCGA-W3-AA1V-06 8 110374869 110374869 G A PKHD1L1 Silent p.A20A 0.29 TCGA-W3-AA1V-06 8 110457772 110457772 G A PKHD1L1 Missense_Mutation p.V1892I 0.13 deleterious(0.01) benign(0.375) TCGA-W3-AA1V-06 8 110465002 110465002 G A PKHD1L1 Missense_Mutation p.G2188E 0.63 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 110503208 110503208 A G PKHD1L1 Missense_Mutation p.E3331G 0.67 tolerated(0.24) benign(0.002) TCGA-W3-AA1V-06 8 110535026 110535026 C T PKHD1L1 Silent p.F4079F 0.59 TCGA-W3-AA1V-06 8 110573133 110573133 G C EBAG9 Missense_Mutation p.A166P 0.23 deleterious(0.03) benign(0.369) TCGA-W3-AA1V-06 8 110984833 110984833 G A KCNV1 Silent p.I215I 0.14 TCGA-W3-AA1V-06 8 110984942 110984942 T C KCNV1 Missense_Mutation p.E179G 0.21 tolerated(0.14) possibly_damaging(0.447) TCGA-W3-AA1V-06 8 113249525 113249525 G A CSMD3 Silent p.F3507F 0.53 TCGA-W3-AA1V-06 8 113256659 113256659 C T CSMD3 Missense_Mutation p.D3456N 0.15 deleterious(0.04) probably_damaging(0.966) TCGA-W3-AA1V-06 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.21 TCGA-W3-AA1V-06 8 113529325 113529325 C T CSMD3 Missense_Mutation p.R1565K 0.17 tolerated(1) benign(0.024) TCGA-W3-AA1V-06 8 113599353 113599353 C T CSMD3 Missense_Mutation p.G1276E 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 8 113697653 113697653 A G CSMD3 Missense_Mutation p.F822L 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 8 113702205 113702205 G A CSMD3 Missense_Mutation p.R683C 0.54 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1V-06 8 113988153 113988153 G A CSMD3 Missense_Mutation p.P419S 0.14 tolerated(0.83) benign(0) TCGA-W3-AA1V-06 8 114389086 114389086 T C CSMD3 Intron 0.17 TCGA-W3-AA1V-06 8 11615819 11615819 G A GATA4 Silent p.A388A 0.26 TCGA-W3-AA1V-06 8 117868519 117868519 G A RAD21 Missense_Mutation p.P275S 0.55 tolerated(0.4) benign(0.018) TCGA-W3-AA1V-06 8 118185022 118185022 C T SLC30A8 3'UTR 0.17 TCGA-W3-AA1V-06 8 118842569 118842569 G A EXT1 Missense_Mutation p.S395F 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-W3-AA1V-06 8 11995104 11995104 C T USP17L2 Missense_Mutation p.R389K 0.37 tolerated(0.97) possibly_damaging(0.777) TCGA-W3-AA1V-06 8 120103385 120103385 C T COLEC10 Intron 0.16 TCGA-W3-AA1V-06 8 120118154 120118154 C T COLEC10 Silent p.P186P 0.55 TCGA-W3-AA1V-06 8 120233909 120233909 C T MAL2 Missense_Mutation p.S72F 0.62 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 120744142 120744142 G A TAF2 3'UTR 0.12 TCGA-W3-AA1V-06 8 120816152 120816152 G A TAF2 Missense_Mutation p.H176Y 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1V-06 8 120831708 120831708 G A TAF2 Silent p.N59N 0.16 TCGA-W3-AA1V-06 8 121219331 121219331 G A COL14A1 Missense_Mutation p.E397K 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1V-06 8 121522267 121522267 T C MTBP Silent p.I659I 0.58 TCGA-W3-AA1V-06 8 122626473 122626473 A G HAS2 Missense_Mutation p.L512P 0.16 deleterious(0.01) possibly_damaging(0.836) TCGA-W3-AA1V-06 8 123964984 123964984 C T ZHX2 Missense_Mutation p.P412S 0.20 tolerated(0.29) benign(0.002) TCGA-W3-AA1V-06 8 123965754 123965754 C T ZHX2 Silent p.V668V 0.23 TCGA-W3-AA1V-06 8 124219426 124219426 G A FAM83A Missense_Mutation p.R268Q 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA1V-06 8 124373841 124373841 G A ATAD2 Silent p.S365S 0.54 TCGA-W3-AA1V-06 8 124448740 124448740 C T WDYHV1 Silent p.F94F 0.20 TCGA-W3-AA1V-06 8 124810376 124810376 C T FAM91A1 Silent p.D486D 0.18 TCGA-W3-AA1V-06 8 124975557 124975557 C T FER1L6 Missense_Mutation p.S39F 0.62 tolerated_low_confidence(0.07) benign(0.004) TCGA-W3-AA1V-06 8 125339637 125339637 G A TMEM65 Silent p.F125F 0.76 TCGA-W3-AA1V-06 8 125551345 125551345 C T TATDN1 5'Flank 0.29 TCGA-W3-AA1V-06 8 13072222 13072222 G A DLC1 Intron 0.36 TCGA-W3-AA1V-06 8 130762305 130762305 G A GSDMC Nonsense_Mutation p.Q382* 0.13 TCGA-W3-AA1V-06 8 131880124 131880124 G A ADCY8 Silent p.I726I 0.26 TCGA-W3-AA1V-06 8 131896878 131896878 C T ADCY8 Missense_Mutation p.D681N 0.65 deleterious(0.05) probably_damaging(0.993) TCGA-W3-AA1V-06 8 131949350 131949350 C T ADCY8 Missense_Mutation p.E484K 0.35 deleterious(0) probably_damaging(0.959) TCGA-W3-AA1V-06 8 131964122 131964122 C T ADCY8 Silent p.E411E 0.17 TCGA-W3-AA1V-06 8 133192440 133192440 C T KCNQ3 Nonsense_Mutation p.W247* 0.35 TCGA-W3-AA1V-06 8 133885371 133885371 C T TG Silent p.P181P 0.24 TCGA-W3-AA1V-06 8 133900755 133900755 G A TG Silent p.V901V 0.24 TCGA-W3-AA1V-06 8 133923744 133923744 C T TG Silent p.I1375I 0.57 TCGA-W3-AA1V-06 8 135613910 135613910 G A ZFAT Silent p.L684L 0.26 TCGA-W3-AA1V-06 8 139144889 139144889 C T FAM135B Missense_Mutation p.E1390K 0.63 deleterious(0) probably_damaging(0.978) TCGA-W3-AA1V-06 8 139144944 139144944 G A FAM135B Silent p.P1371P 0.61 TCGA-W3-AA1V-06 8 139158239 139158239 C T FAM135B Missense_Mutation p.G1168E 0.41 deleterious(0.01) benign(0.114) TCGA-W3-AA1V-06 8 139160793 139160793 G A FAM135B Missense_Mutation p.H1140Y 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 139160823 139160823 C T FAM135B Missense_Mutation p.E1130K 0.19 deleterious(0) probably_damaging(0.978) TCGA-W3-AA1V-06 8 139163500 139163500 G A FAM135B Missense_Mutation p.S1073F 0.54 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1V-06 8 139165030 139165030 G A FAM135B Missense_Mutation p.P563L 0.23 tolerated(0.05) benign(0.004) TCGA-W3-AA1V-06 8 13947992 13947992 G A SGCZ Missense_Mutation p.S300F 0.28 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 13959987 13959987 G A SGCZ Silent p.S214S 0.44 TCGA-W3-AA1V-06 8 139626162 139626162 C T COL22A1 Missense_Mutation p.G1309D 0.51 unknown(0) TCGA-W3-AA1V-06 8 139839015 139839015 G A COL22A1 Silent p.F285F 0.68 TCGA-W3-AA1V-06 8 143558603 143558603 G A BAI1 Missense_Mutation p.E396K 0.46 deleterious(0) possibly_damaging(0.635) TCGA-W3-AA1V-06 8 143922559 143922559 C T GML Silent p.D33D 0.20 TCGA-W3-AA1V-06 8 143955735 143955735 C T CYP11B1 3'UTR 0.19 TCGA-W3-AA1V-06 8 144332636 144332636 C T ZFP41 3'UTR 0.18 TCGA-W3-AA1V-06 8 144463792 144463792 C T RHPN1 Silent p.P513P 0.36 TCGA-W3-AA1V-06 8 144589999 144589999 C T ZC3H3 Silent p.K544K 0.20 TCGA-W3-AA1V-06 8 144621342 144621342 G A ZC3H3 Silent p.H65H 0.40 TCGA-W3-AA1V-06 8 144663299 144663299 G A EEF1D Silent p.I471I 0.68 TCGA-W3-AA1V-06 8 144688011 144688011 G A PYCRL Silent p.A240A 0.19 TCGA-W3-AA1V-06 8 144804484 144804484 C T MAPK15 3'UTR 0.50 TCGA-W3-AA1V-06 8 144940330 144940330 C T EPPK1 Silent p.R2364R 0.11 TCGA-W3-AA1V-06 8 144940696 144940696 C T EPPK1 Silent p.K2242K 0.09 TCGA-W3-AA1V-06 8 144943620 144943620 C T EPPK1 Missense_Mutation p.D1268N 0.63 benign(0.028) TCGA-W3-AA1V-06 8 145114925 145114925 G A OPLAH Missense_Mutation p.P4L 0.19 tolerated(0.07) benign(0.03) TCGA-W3-AA1V-06 8 145580763 145580763 G A FBXL6 Missense_Mutation p.P220S 0.29 tolerated(0.13) benign(0.266) TCGA-W3-AA1V-06 8 145603094 145603094 C T ADCK5 Missense_Mutation p.H11Y 0.32 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-W3-AA1V-06 8 145667458 145667458 G A TONSL Missense_Mutation p.P276L 0.22 tolerated(0.1) probably_damaging(0.995) TCGA-W3-AA1V-06 8 145698667 145698667 C T KIFC2 Missense_Mutation p.P784L 0.64 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-W3-AA1V-06 8 145773390 145773390 G C ARHGAP39 Missense_Mutation p.N360K 0.65 tolerated(0.26) benign(0.001) TCGA-W3-AA1V-06 8 146156878 146156878 G A ZNF16 Missense_Mutation p.P432L 0.20 deleterious(0) probably_damaging(0.971) TCGA-W3-AA1V-06 8 146157162 146157162 G A ZNF16 Silent p.I337I 0.19 TCGA-W3-AA1V-06 8 15517056 15517056 C T TUSC3 Missense_Mutation p.P156L 0.29 deleterious(0.02) possibly_damaging(0.864) TCGA-W3-AA1V-06 8 15967530 15967530 G A MSR1 3'UTR 0.27 TCGA-W3-AA1V-06 8 15998384 15998384 G A MSR1 Intron 0.39 TCGA-W3-AA1V-06 8 17400835 17400835 C T SLC7A2 Missense_Mutation p.S36L 0.25 tolerated_low_confidence(0.81) benign(0) TCGA-W3-AA1V-06 8 17419559 17419559 C T SLC7A2 Silent p.F577F 0.25 TCGA-W3-AA1V-06 8 18257889 18257889 G A NAT2 Missense_Mutation p.G126R 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 2033472 2033472 G A MYOM2 Missense_Mutation p.E532K 0.36 tolerated(1) possibly_damaging(0.472) TCGA-W3-AA1V-06 8 2063855 2063855 G A MYOM2 Missense_Mutation p.G1095E 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 2071486 2071486 A C MYOM2 Missense_Mutation p.D1209A 0.40 deleterious(0) possibly_damaging(0.888) TCGA-W3-AA1V-06 8 21976574 21976574 G A HR Silent p.F1034F 0.31 TCGA-W3-AA1V-06 8 22005906 22005906 G A LGI3 Missense_Mutation p.P472S 0.50 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 22168806 22168806 G A PIWIL2 Missense_Mutation p.G661E 0.28 tolerated(0.17) benign(0.004) TCGA-W3-AA1V-06 8 22265861 22265861 C T SLC39A14 Silent p.F103F 0.36 TCGA-W3-AA1V-06 8 22868195 22868195 C T RHOBTB2 Missense_Mutation p.L611F 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-W3-AA1V-06 8 22995421 22995421 C T TNFRSF10D Missense_Mutation p.E375K 0.28 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-W3-AA1V-06 8 23069644 23069644 C T TNFRSF10A Missense_Mutation p.E130K 0.44 tolerated(0.51) benign(0.023) TCGA-W3-AA1V-06 8 23174628 23174628 C T LOXL2 Splice_Site p.X491_splice 0.40 TCGA-W3-AA1V-06 8 23709043 23709043 C T STC1 Missense_Mutation p.G88E 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 24193141 24193141 G A ADAM28 Silent p.E518E 0.27 TCGA-W3-AA1V-06 8 24199186 24199186 C T ADAM28 Silent p.F582F 0.38 TCGA-W3-AA1V-06 8 24211907 24211907 C T ADAM28 Missense_Mutation p.P773L 0.28 deleterious_low_confidence(0) benign(0.11) TCGA-W3-AA1V-06 8 24249813 24249813 G T ADAMDEC1 Nonsense_Mutation p.E43* 0.38 TCGA-W3-AA1V-06 8 24300024 24300024 C T ADAM7 Missense_Mutation p.R31C 0.34 deleterious(0) possibly_damaging(0.533) TCGA-W3-AA1V-06 8 24300070 24300070 C T ADAM7 Missense_Mutation p.T46I 0.32 tolerated(0.4) benign(0.026) TCGA-W3-AA1V-06 8 24326285 24326285 C T ADAM7 Silent p.I195I 0.28 TCGA-W3-AA1V-06 8 24342819 24342819 G A ADAM7 Missense_Mutation p.G302E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 24358302 24358302 G A ADAM7 Splice_Site p.X668_splice 0.30 TCGA-W3-AA1V-06 8 24773150 24773150 G A NEFM Silent p.R371R 0.33 TCGA-W3-AA1V-06 8 25191660 25191660 C T DOCK5 Missense_Mutation p.P714S 0.38 deleterious(0.02) possibly_damaging(0.78) TCGA-W3-AA1V-06 8 25230079 25230079 C T DOCK5 Silent p.L1177L 0.40 TCGA-W3-AA1V-06 8 25337590 25337590 C T CDCA2 Missense_Mutation p.R328C 0.32 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 25718685 25718685 T C EBF2 Missense_Mutation p.N408D 0.35 tolerated(0.06) benign(0.05) TCGA-W3-AA1V-06 8 25745406 25745406 G A EBF2 Silent p.F278F 0.30 TCGA-W3-AA1V-06 8 26441385 26441385 C T DPYSL2 Missense_Mutation p.P67S 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 26627894 26627894 C T ADRA1A Silent p.T391T 0.30 TCGA-W3-AA1V-06 8 27097464 27097464 C T STMN4 Intron 0.38 TCGA-W3-AA1V-06 8 27101249 27101249 G A STMN4 5'UTR 0.26 TCGA-W3-AA1V-06 8 27255260 27255260 G A PTK2B Silent p.G53G 0.25 TCGA-W3-AA1V-06 8 27303314 27303314 C T PTK2B Missense_Mutation p.P740S 0.34 tolerated(0.21) possibly_damaging(0.549) TCGA-W3-AA1V-06 8 27457494 27457494 G A CLU Silent p.L323L 0.18 TCGA-W3-AA1V-06 8 27888842 27888842 G A NUGGC Missense_Mutation p.S609F 0.46 deleterious(0) possibly_damaging(0.868) TCGA-W3-AA1V-06 8 27888894 27888894 C T NUGGC Missense_Mutation p.G592R 0.36 tolerated(0.19) benign(0.037) TCGA-W3-AA1V-06 8 2807816 2807816 A - CSMD1 Frame_Shift_Del p.G3419Afs*7 0.24 TCGA-W3-AA1V-06 8 2813128 2813128 T A CSMD1 Missense_Mutation p.K3326M 0.21 probably_damaging(0.999) TCGA-W3-AA1V-06 8 2832025 2832025 C T CSMD1 Silent p.T2896T 0.77 TCGA-W3-AA1V-06 8 28573503 28573503 C T EXTL3 5'UTR 0.25 TCGA-W3-AA1V-06 8 28608272 28608272 C T EXTL3 Silent p.F883F 0.45 TCGA-W3-AA1V-06 8 28821369 28821369 C T HMBOX1 5'UTR 0.27 TCGA-W3-AA1V-06 8 2886969 2886969 G A CSMD1 Missense_Mutation p.S2576F 0.45 benign(0.118) TCGA-W3-AA1V-06 8 30546811 30546811 G C GSR Missense_Mutation p.S303W 0.24 deleterious(0) possibly_damaging(0.779) TCGA-W3-AA1V-06 8 3205659 3205659 C T CSMD1 Missense_Mutation p.G1110E 0.40 probably_damaging(1) TCGA-W3-AA1V-06 8 3216752 3216752 G A CSMD1 Missense_Mutation p.R1076C 0.28 probably_damaging(0.999) TCGA-W3-AA1V-06 8 32621511 32621511 C T NRG1 Missense_Mutation p.P510L 0.22 tolerated(0.34) possibly_damaging(0.543) TCGA-W3-AA1V-06 8 3263720 3263720 C T CSMD1 Missense_Mutation p.D699N 0.30 probably_damaging(0.999) TCGA-W3-AA1V-06 8 33230147 33230147 C T FUT10 Missense_Mutation p.R463K 0.20 tolerated(0.12) benign(0.012) TCGA-W3-AA1V-06 8 33247251 33247251 G A FUT10 Missense_Mutation p.H148Y 0.20 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 35579824 35579824 G A UNC5D Missense_Mutation p.R405Q 0.55 deleterious(0.01) benign(0.037) TCGA-W3-AA1V-06 8 35583903 35583903 G A UNC5D Missense_Mutation p.G513R 0.25 tolerated(0.09) benign(0.015) TCGA-W3-AA1V-06 8 36641997 36641997 C T KCNU1 Silent p.I23I 0.66 TCGA-W3-AA1V-06 8 36767033 36767033 C T KCNU1 Missense_Mutation p.P771S 0.60 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1V-06 8 36793063 36793063 C T KCNU1 Silent p.F1025F 0.63 TCGA-W3-AA1V-06 8 37633456 37633456 G A PROSC Silent p.E206E 0.18 TCGA-W3-AA1V-06 8 37633457 37633457 G A PROSC Missense_Mutation p.E207K 0.17 tolerated(0.14) benign(0.008) TCGA-W3-AA1V-06 8 37691583 37691583 C T GPR124 Silent p.I515I 0.45 TCGA-W3-AA1V-06 8 37706161 37706161 G A BRF2 Missense_Mutation p.S56F 0.68 tolerated(0.05) possibly_damaging(0.57) TCGA-W3-AA1V-06 8 37963087 37963087 G A ASH2L Missense_Mutation p.G7R 0.17 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1V-06 8 37971719 37971719 C T ASH2L Missense_Mutation p.P199S 0.63 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1V-06 8 38194905 38194905 G A WHSC1L1 Silent p.S276S 0.71 TCGA-W3-AA1V-06 8 39022348 39022348 A T ADAM32 Silent p.A220A 0.14 TCGA-W3-AA1V-06 8 39468050 39468050 G A ADAM18 Missense_Mutation p.G116E 0.12 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 39468064 39468064 G A ADAM18 Missense_Mutation p.E121K 0.17 deleterious(0) probably_damaging(0.981) TCGA-W3-AA1V-06 8 39537570 39537570 G A ADAM18 Missense_Mutation p.G549E 0.63 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 8 39564321 39564321 T A ADAM18 Missense_Mutation p.F639I 0.52 tolerated(0.29) benign(0.148) TCGA-W3-AA1V-06 8 39644532 39644532 C T ADAM2 Silent p.G284G 0.14 TCGA-W3-AA1V-06 8 39682415 39682415 T G ADAM2 Missense_Mutation p.N64H 0.35 tolerated(0.54) benign(0.012) TCGA-W3-AA1V-06 8 39776445 39776445 C T IDO1 Missense_Mutation p.P139S 0.60 deleterious(0.03) probably_damaging(0.985) TCGA-W3-AA1V-06 8 40532366 40532366 C T ZMAT4 Missense_Mutation p.R145K 0.37 tolerated(1) probably_damaging(0.996) TCGA-W3-AA1V-06 8 41456538 41456538 G A AGPAT6 5'UTR 0.22 TCGA-W3-AA1V-06 8 41529935 41529935 C T ANK1 Missense_Mutation p.R1719K 0.20 tolerated_low_confidence(0.31) benign(0.011) TCGA-W3-AA1V-06 8 41561647 41561647 C T ANK1 Missense_Mutation p.S769N 0.16 deleterious(0) benign(0.375) TCGA-W3-AA1V-06 8 41834577 41834577 G A KAT6A Nonsense_Mutation p.R438* 0.50 TCGA-W3-AA1V-06 8 41834595 41834595 C T KAT6A Missense_Mutation p.D432N 0.56 possibly_damaging(0.829) TCGA-W3-AA1V-06 8 42294692 42294692 C T SLC20A2 Silent p.E446E 0.18 TCGA-W3-AA1V-06 8 42294694 42294694 C T SLC20A2 Missense_Mutation p.E446K 0.18 tolerated(0.55) possibly_damaging(0.908) TCGA-W3-AA1V-06 8 42711397 42711397 G A RNF170 Silent p.L228L 0.21 TCGA-W3-AA1V-06 8 42821745 42821745 C T HOOK3 Silent p.I303I 0.30 TCGA-W3-AA1V-06 8 43147669 43147669 G A POTEA RNA 0.40 TCGA-W3-AA1V-06 8 48625371 48625371 C T SPIDR Silent p.L709L 0.55 TCGA-W3-AA1V-06 8 48776081 48776081 G A PRKDC Silent p.L1876L 0.63 TCGA-W3-AA1V-06 8 49985388 49985388 C T C8orf22 5'UTR 0.40 TCGA-W3-AA1V-06 8 49986677 49986677 G A C8orf22 Missense_Mutation p.D39N 0.60 tolerated(0.4) benign(0.118) TCGA-W3-AA1V-06 8 51306787 51306787 G T SNTG1 5'UTR 0.25 TCGA-W3-AA1V-06 8 52320797 52320797 C T PXDNL Silent p.A1129A 0.38 TCGA-W3-AA1V-06 8 52321470 52321470 C T PXDNL Missense_Mutation p.R905Q 0.83 tolerated(0.67) benign(0.004) TCGA-W3-AA1V-06 8 52323826 52323826 C T PXDNL Silent p.V682V 0.50 TCGA-W3-AA1V-06 8 53025832 53025832 C T ST18 Missense_Mutation p.E1024K 0.57 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 53050002 53050002 C T ST18 Missense_Mutation p.G737E 0.72 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 53073941 53073941 G T ST18 Missense_Mutation p.P530T 0.18 tolerated(0.17) benign(0.392) TCGA-W3-AA1V-06 8 54163406 54163406 C T OPRK1 Silent p.A64A 0.23 TCGA-W3-AA1V-06 8 55372435 55372435 G A SOX17 Missense_Mutation p.M375I 0.28 tolerated(0.48) benign(0.007) TCGA-W3-AA1V-06 8 55538858 55538858 G A RP1 Missense_Mutation p.E806K 0.25 tolerated(0.06) benign(0.018) TCGA-W3-AA1V-06 8 55539854 55539854 C T RP1 Silent p.L1138L 0.29 TCGA-W3-AA1V-06 8 55540080 55540080 C T RP1 Missense_Mutation p.S1213F 0.77 tolerated(0.17) benign(0.022) TCGA-W3-AA1V-06 8 55541106 55541106 G A RP1 Missense_Mutation p.G1555E 0.22 tolerated(0.13) benign(0.139) TCGA-W3-AA1V-06 8 56015378 56015378 G A XKR4 Nonsense_Mutation p.W110* 0.76 TCGA-W3-AA1V-06 8 56015486 56015486 G A XKR4 Silent p.G146G 0.80 TCGA-W3-AA1V-06 8 56436081 56436081 C T XKR4 Silent p.I416I 0.57 TCGA-W3-AA1V-06 8 56436589 56436589 C T XKR4 Missense_Mutation p.R586C 0.15 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 8 57228644 57228644 C T SDR16C5 Missense_Mutation p.G88E 0.42 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1V-06 8 57892748 57892748 A C IMPAD1 Silent p.T132T 0.27 TCGA-W3-AA1V-06 8 59404231 59404231 C T CYP7A1 Missense_Mutation p.G440R 0.17 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 59547928 59547928 G A NSMAF Missense_Mutation p.P109S 0.89 tolerated(0.12) benign(0.139) TCGA-W3-AA1V-06 8 618731 618731 G A ERICH1 Silent p.R375R 0.36 TCGA-W3-AA1V-06 8 623713 623713 G A ERICH1 Silent p.T213T 0.39 TCGA-W3-AA1V-06 8 66620180 66620180 T G MTFR1 Missense_Mutation p.D289E 0.27 tolerated(0.05) benign(0.046) TCGA-W3-AA1V-06 8 67062036 67062036 C T TRIM55 Missense_Mutation p.H254Y 0.75 deleterious(0) possibly_damaging(0.638) TCGA-W3-AA1V-06 8 67356896 67356896 C T ADHFE1 Missense_Mutation p.P89L 0.05 tolerated(0.08) benign(0.034) TCGA-W3-AA1V-06 8 6782392 6782392 G A DEFA6 Missense_Mutation p.S84F 0.25 tolerated(0.69) benign(0.004) TCGA-W3-AA1V-06 8 68184154 68184154 G A ARFGEF1 Missense_Mutation p.S452F 0.70 deleterious(0.05) probably_damaging(0.987) TCGA-W3-AA1V-06 8 6873426 6873426 G A DEFA3 3'UTR 0.24 TCGA-W3-AA1V-06 8 68931844 68931844 G A PREX2 Missense_Mutation p.E92K 0.07 deleterious(0) possibly_damaging(0.67) TCGA-W3-AA1V-06 8 69005857 69005857 G A PREX2 Nonsense_Mutation p.W756* 0.74 TCGA-W3-AA1V-06 8 69058575 69058575 C T PREX2 Missense_Mutation p.L1407F 0.74 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 8 69552637 69552637 G A C8orf34 Missense_Mutation p.G378R 0.46 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 8 7320295 7320295 C T SPAG11B Missense_Mutation p.G50R 0.18 tolerated(0.42) benign(0.002) TCGA-W3-AA1V-06 8 7340216 7340216 A T DEFB106B Missense_Mutation p.N36K 0.55 tolerated(0.32) benign(0.009) TCGA-W3-AA1V-06 8 73849983 73849983 C T KCNB2 Missense_Mutation p.S798L 0.86 tolerated_low_confidence(0.15) benign(0.027) TCGA-W3-AA1V-06 8 73850156 73850156 C T KCNB2 Missense_Mutation p.P856S 0.54 deleterious_low_confidence(0.05) benign(0.136) TCGA-W3-AA1V-06 8 76476230 76476230 C G HNF4G Missense_Mutation p.P413A 0.16 deleterious(0) possibly_damaging(0.899) TCGA-W3-AA1V-06 8 7680921 7680921 G A DEFB105A Missense_Mutation p.S32F 0.13 deleterious(0.03) probably_damaging(0.962) TCGA-W3-AA1V-06 8 77617799 77617799 C T ZFHX4 Silent p.T492T 0.39 TCGA-W3-AA1V-06 8 77618316 77618316 G A ZFHX4 Missense_Mutation p.E665K 0.34 possibly_damaging(0.486) TCGA-W3-AA1V-06 8 77619871 77619871 C T ZFHX4 Missense_Mutation p.P894L 0.59 possibly_damaging(0.851) TCGA-W3-AA1V-06 8 77690474 77690474 C T ZFHX4 Missense_Mutation p.P1042S 0.41 benign(0) TCGA-W3-AA1V-06 8 77763159 77763159 C T ZFHX4 Silent p.L1334L 0.56 TCGA-W3-AA1V-06 8 77763723 77763723 T A ZFHX4 Silent p.P1522P 0.48 TCGA-W3-AA1V-06 8 77764324 77764324 C T ZFHX4 Missense_Mutation p.P1723S 0.27 possibly_damaging(0.803) TCGA-W3-AA1V-06 8 77775605 77775605 G A ZFHX4 Missense_Mutation p.E3219K 0.30 possibly_damaging(0.789) TCGA-W3-AA1V-06 8 77775653 77775653 G A ZFHX4 Missense_Mutation p.E3235K 0.30 benign(0.066) TCGA-W3-AA1V-06 8 77895775 77895775 G A PEX2 Nonsense_Mutation p.Q214* 0.35 TCGA-W3-AA1V-06 8 80523386 80523386 G A STMN2 5'Flank 0.33 TCGA-W3-AA1V-06 8 80831334 80831334 G A MRPS28 Missense_Mutation p.L149F 0.18 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 8 8234151 8234151 G A SGK223 Missense_Mutation p.P590S 0.48 possibly_damaging(0.69) TCGA-W3-AA1V-06 8 82370891 82370891 C T FABP9 Nonsense_Mutation p.W98* 0.24 TCGA-W3-AA1V-06 8 85441684 85441684 C T RALYL Missense_Mutation p.S56L 0.76 deleterious(0.03) benign(0.196) TCGA-W3-AA1V-06 8 86127185 86127188 TTGC GT C8orf59 Frame_Shift_Del p.A65Tfs*6 0.19 TCGA-W3-AA1V-06 8 86574470 86574470 G A REXO1L1P Silent p.T419T 0.29 TCGA-W3-AA1V-06 8 87229920 87229920 C A SLC7A13 Nonsense_Mutation p.E320* 0.23 TCGA-W3-AA1V-06 8 87242119 87242119 G A SLC7A13 Missense_Mutation p.P130S 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 8 8748825 8748825 G A MFHAS1 Missense_Mutation p.R582W 0.31 deleterious(0) possibly_damaging(0.543) TCGA-W3-AA1V-06 8 8748826 8748826 G C MFHAS1 Silent p.A581A 0.31 TCGA-W3-AA1V-06 8 87645063 87645063 C T CNGB3 Missense_Mutation p.E413K 0.23 deleterious(0.01) benign(0.141) TCGA-W3-AA1V-06 8 87660029 87660029 C T CNGB3 Silent p.K330K 0.10 TCGA-W3-AA1V-06 8 87680314 87680314 G T CNGB3 Silent p.V192V 0.25 TCGA-W3-AA1V-06 8 87917415 87917415 G A CNBD1 Missense_Mutation p.E89K 0.33 tolerated(0.69) benign(0.005) TCGA-W3-AA1V-06 8 87917416 87917416 A C CNBD1 Missense_Mutation p.E89A 0.36 tolerated(0.55) benign(0.057) TCGA-W3-AA1V-06 8 88886007 88886007 C T DCAF4L2 Missense_Mutation p.D65N 0.65 deleterious(0.05) benign(0.109) TCGA-W3-AA1V-06 8 89058903 89058903 C T MMP16 Missense_Mutation p.E495K 0.41 deleterious(0.02) possibly_damaging(0.525) TCGA-W3-AA1V-06 8 89081689 89081689 C T MMP16 Intron 0.39 TCGA-W3-AA1V-06 8 89086838 89086838 A C MMP16 Missense_Mutation p.F406C 0.52 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1V-06 8 90967547 90967547 G A NBN Missense_Mutation p.S454F 0.60 deleterious(0) possibly_damaging(0.863) TCGA-W3-AA1V-06 8 91064183 91064183 C T DECR1 3'UTR 0.18 TCGA-W3-AA1V-06 8 91937793 91937793 G A NECAB1 Silent p.S175S 0.79 TCGA-W3-AA1V-06 8 92407379 92407379 T A SLC26A7 3'Flank 0.21 TCGA-W3-AA1V-06 8 92972689 92972689 G A RUNX1T1 Silent p.A543A 0.45 TCGA-W3-AA1V-06 8 93017319 93017319 C T RUNX1T1 Intron 0.18 TCGA-W3-AA1V-06 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.63 deleterious(0.03) benign(0.185) TCGA-W3-AA1V-06 8 93023262 93023262 G A RUNX1T1 Missense_Mutation p.P187S 0.61 deleterious(0.01) probably_damaging(0.963) TCGA-W3-AA1V-06 8 94746338 94746338 G A RBM12B Silent p.P767P 0.61 TCGA-W3-AA1V-06 8 94746339 94746339 G A RBM12B Missense_Mutation p.P767L 0.61 tolerated_low_confidence(0.24) benign(0.193) TCGA-W3-AA1V-06 8 94935351 94935351 A G PDP1 Missense_Mutation p.D380G 0.61 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 8 95523931 95523931 G A KIAA1429 Missense_Mutation p.L958F 0.64 deleterious(0.02) probably_damaging(0.989) TCGA-W3-AA1V-06 8 95531228 95531228 G A KIAA1429 Missense_Mutation p.S833F 0.37 deleterious(0.02) probably_damaging(0.953) TCGA-W3-AA1V-06 8 95680323 95680323 C T ESRP1 Missense_Mutation p.L360F 0.18 deleterious(0.01) probably_damaging(0.91) TCGA-W3-AA1V-06 8 99168618 99168618 G A POP1 Missense_Mutation p.G800R 0.16 tolerated(0.4) benign(0.003) TCGA-W3-AA1V-06 9 100689530 100689530 C T HEMGN 3'UTR 0.40 TCGA-W3-AA1V-06 9 101125051 101125051 G A GABBR2 Silent p.I613I 0.31 TCGA-W3-AA1V-06 9 101498792 101498792 G A ANKS6 3'UTR 0.80 TCGA-W3-AA1V-06 9 101599327 101599327 C T GALNT12 Missense_Mutation p.P370L 0.80 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 9 101747861 101747861 G A COL15A1 Missense_Mutation p.G39S 0.53 tolerated(0.3) benign(0.002) TCGA-W3-AA1V-06 9 103109463 103109463 G A TEX10 Missense_Mutation p.P136S 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 9 104133484 104133484 C T BAAT Missense_Mutation p.G68E 0.67 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 9 104133714 104133714 C T BAAT 5'UTR 0.46 TCGA-W3-AA1V-06 9 104239192 104239192 C T TMEM246 Missense_Mutation p.M61I 0.25 deleterious(0.03) benign(0.303) TCGA-W3-AA1V-06 9 104297829 104297829 T A RNF20 Missense_Mutation p.S42T 0.82 tolerated(0.45) benign(0.153) TCGA-W3-AA1V-06 9 1056739 1056739 G A DMRT2 Silent p.Q384Q 0.38 TCGA-W3-AA1V-06 9 105765499 105765499 C T CYLC2 Missense_Mutation p.T45I 0.35 deleterious(0.01) possibly_damaging(0.899) TCGA-W3-AA1V-06 9 105767362 105767362 G A CYLC2 Missense_Mutation p.G150E 0.67 tolerated(0.38) unknown(0) TCGA-W3-AA1V-06 9 105767454 105767454 G A CYLC2 Missense_Mutation p.E181K 0.38 deleterious(0.01) unknown(0) TCGA-W3-AA1V-06 9 105767889 105767889 G A CYLC2 Missense_Mutation p.D326N 0.65 tolerated_low_confidence(0.24) unknown(0) TCGA-W3-AA1V-06 9 107266676 107266676 C T OR13F1 Silent p.L45L 0.75 TCGA-W3-AA1V-06 9 107267407 107267407 C T OR13F1 Silent p.I288I 0.79 TCGA-W3-AA1V-06 9 107298809 107298809 G A OR13C3 Missense_Mutation p.L96F 0.38 deleterious(0) probably_damaging(0.964) TCGA-W3-AA1V-06 9 107299043 107299043 G A OR13C3 Missense_Mutation p.H18Y 0.70 tolerated_low_confidence(0.67) benign(0) TCGA-W3-AA1V-06 9 107299096 107299096 C T OR13C3 5'UTR 0.50 TCGA-W3-AA1V-06 9 107332231 107332231 G A OR13C8 Silent p.K261K 0.80 TCGA-W3-AA1V-06 9 107361185 107361185 C A OR13C5 Missense_Mutation p.R170S 0.72 deleterious(0.02) benign(0.016) TCGA-W3-AA1V-06 9 107361417 107361417 G A OR13C5 Missense_Mutation p.S93F 0.63 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1V-06 9 111945046 111945046 G A EPB41L4B Missense_Mutation p.P817L 0.29 deleterious_low_confidence(0.02) benign(0.004) TCGA-W3-AA1V-06 9 111945047 111945047 G A EPB41L4B Missense_Mutation p.P817S 0.29 deleterious_low_confidence(0.04) benign(0.007) TCGA-W3-AA1V-06 9 113562842 113562842 C T MUSK Silent p.T728T 0.44 TCGA-W3-AA1V-06 9 113562861 113562861 G A MUSK Missense_Mutation p.E735K 0.72 deleterious(0) possibly_damaging(0.515) TCGA-W3-AA1V-06 9 113562862 113562862 A T MUSK Missense_Mutation p.E735V 0.70 deleterious(0) possibly_damaging(0.86) TCGA-W3-AA1V-06 9 113637759 113637759 G A LPAR1 Missense_Mutation p.S346F 0.83 deleterious(0) probably_damaging(0.986) TCGA-W3-AA1V-06 9 114090507 114090507 C T OR2K2 Missense_Mutation p.M69I 0.23 deleterious(0.03) benign(0.146) TCGA-W3-AA1V-06 9 114192849 114192849 T A KIAA0368 Missense_Mutation p.D481V 0.67 deleterious(0.02) possibly_damaging(0.734) TCGA-W3-AA1V-06 9 114195604 114195604 G A KIAA0368 Missense_Mutation p.L431F 0.75 tolerated(0.05) possibly_damaging(0.521) TCGA-W3-AA1V-06 9 114304842 114304842 C T ZNF483 Nonsense_Mutation p.R543* 0.69 TCGA-W3-AA1V-06 9 114305016 114305016 C T ZNF483 Missense_Mutation p.H601Y 0.35 deleterious(0) benign(0.219) TCGA-W3-AA1V-06 9 115806305 115806305 A G ZFP37 Missense_Mutation p.V198A 0.77 tolerated(1) benign(0.001) TCGA-W3-AA1V-06 9 115811745 115811745 G A ZFP37 Silent p.S82S 0.65 TCGA-W3-AA1V-06 9 115935741 115935741 G A FKBP15 Nonsense_Mutation p.Q842* 0.23 TCGA-W3-AA1V-06 9 116079001 116079001 G T WDR31 3'UTR 0.77 TCGA-W3-AA1V-06 9 116132169 116132169 G A BSPRY Missense_Mutation p.G319D 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 9 116185693 116185693 C T C9orf43 Missense_Mutation p.P191S 0.48 deleterious(0) probably_damaging(0.948) TCGA-W3-AA1V-06 9 116191569 116191569 T G C9orf43 Missense_Mutation p.M430R 0.34 tolerated(0.21) possibly_damaging(0.693) TCGA-W3-AA1V-06 9 116260326 116260326 G A RGS3 Missense_Mutation p.G288E 0.20 tolerated(0.18) benign(0.014) TCGA-W3-AA1V-06 9 116345899 116345899 C T RGS3 Missense_Mutation p.P736L 0.46 tolerated_low_confidence(0.06) benign(0.006) TCGA-W3-AA1V-06 9 116346176 116346176 C T RGS3 Silent p.A828A 0.29 TCGA-W3-AA1V-06 9 116836428 116836428 C T AMBP Nonsense_Mutation p.W114* 0.36 TCGA-W3-AA1V-06 9 116930722 116930722 C T COL27A1 Missense_Mutation p.T296M 0.45 unknown(0) TCGA-W3-AA1V-06 9 117071743 117071743 C T COL27A1 Silent p.S1807S 0.33 TCGA-W3-AA1V-06 9 119093540 119093540 G A PAPPA Silent p.V1055V 0.42 TCGA-W3-AA1V-06 9 119124942 119124942 G A PAPPA Silent p.E1473E 0.66 TCGA-W3-AA1V-06 9 119158923 119158923 C T PAPPA 3'UTR 0.82 TCGA-W3-AA1V-06 9 119188193 119188193 G A ASTN2 Silent p.I1268I 0.44 TCGA-W3-AA1V-06 9 119770441 119770441 G A ASTN2 Silent p.S456S 0.39 TCGA-W3-AA1V-06 9 119903603 119903608 ACCTCG CCCTC ASTN2 Intron 0.52 TCGA-W3-AA1V-06 9 120466820 120466820 G A TLR4 Missense_Mutation p.E24K 0.61 tolerated(0.33) possibly_damaging(0.77) TCGA-W3-AA1V-06 9 120475443 120475443 C T TLR4 Missense_Mutation p.P346L 0.69 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1V-06 9 121929418 121929418 G A BRINP1 Silent p.L744L 0.74 TCGA-W3-AA1V-06 9 121930066 121930066 G A BRINP1 Missense_Mutation p.L528F 0.62 deleterious(0.01) possibly_damaging(0.894) TCGA-W3-AA1V-06 9 123932011 123932011 G T CNTRL Nonsense_Mutation p.E2065* 0.30 TCGA-W3-AA1V-06 9 125152498 125152498 G A PTGS1 Missense_Mutation p.D440N 0.65 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 9 125273808 125273808 C T OR1J2 Missense_Mutation p.S243F 0.68 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-W3-AA1V-06 9 125289032 125289032 G A OR1N1 Missense_Mutation p.P181S 0.33 deleterious(0.02) benign(0.311) TCGA-W3-AA1V-06 9 125289254 125289254 C T OR1N1 Missense_Mutation p.D107N 0.76 tolerated(0.15) possibly_damaging(0.769) TCGA-W3-AA1V-06 9 125424002 125424002 G A OR1L1 Missense_Mutation p.R3K 0.73 tolerated(0.9) benign(0.001) TCGA-W3-AA1V-06 9 125486868 125486868 G A OR1L4 Silent p.V200V 0.20 TCGA-W3-AA1V-06 9 125616536 125616536 G A RC3H2 Silent p.F970F 0.43 TCGA-W3-AA1V-06 9 127566454 127566454 C T OLFML2A Missense_Mutation p.S334F 0.41 tolerated(0.29) possibly_damaging(0.449) TCGA-W3-AA1V-06 9 127572373 127572373 G A OLFML2A Silent p.V547V 0.20 TCGA-W3-AA1V-06 9 128064480 128064480 C T GAPVD1 Missense_Mutation p.S135F 0.65 deleterious(0.02) possibly_damaging(0.898) TCGA-W3-AA1V-06 9 129458806 129458806 C T LMX1B 3'UTR 0.64 TCGA-W3-AA1V-06 9 130494481 130494481 G A TOR2A Silent p.H266H 0.83 TCGA-W3-AA1V-06 9 130700157 130700157 C T DPM2 5'UTR 0.56 TCGA-W3-AA1V-06 9 130914213 130914213 C T LCN2 Silent p.V128V 0.70 TCGA-W3-AA1V-06 9 131196450 131196450 G A CERCAM Missense_Mutation p.G425R 0.75 tolerated(1) benign(0.004) TCGA-W3-AA1V-06 9 13121768 13121768 T C MPDZ Missense_Mutation p.K1734R 0.61 tolerated(0.29) benign(0.39) TCGA-W3-AA1V-06 9 133501772 133501772 C T FUBP3 Silent p.L333L 0.43 TCGA-W3-AA1V-06 9 133748416 133748416 C T ABL1 Silent p.F378F 0.22 TCGA-W3-AA1V-06 9 134183410 134183410 G A PPAPDC3 Missense_Mutation p.M184I 0.24 deleterious(0.04) benign(0.356) TCGA-W3-AA1V-06 9 134395555 134395555 C T POMT1 Missense_Mutation p.A580V 0.72 deleterious(0.02) benign(0.033) TCGA-W3-AA1V-06 9 135277513 135277513 C A TTF1 Missense_Mutation p.E232D 0.37 tolerated_low_confidence(0.1) benign(0.089) TCGA-W3-AA1V-06 9 135464760 135464760 C T BARHL1 Silent p.L279L 0.76 TCGA-W3-AA1V-06 9 135863619 135863619 G A GFI1B Missense_Mutation p.D92N 0.65 tolerated(0.16) benign(0.039) TCGA-W3-AA1V-06 9 135917634 135917634 C T GTF3C5 Missense_Mutation p.S105F 0.74 deleterious(0.02) benign(0.213) TCGA-W3-AA1V-06 9 135933475 135933475 G A GTF3C5 3'UTR 0.69 TCGA-W3-AA1V-06 9 135985057 135985057 G A RALGDS Silent p.L180L 0.15 TCGA-W3-AA1V-06 9 136131242 136131242 C T RP11-430N14.4 5'Flank 0.39 TCGA-W3-AA1V-06 9 136289548 136289548 C T ADAMTS13 Nonsense_Mutation p.Q94* 0.18 TCGA-W3-AA1V-06 9 136379801 136379801 G A TMEM8C Missense_Mutation p.P208L 0.26 deleterious(0.03) possibly_damaging(0.864) TCGA-W3-AA1V-06 9 136379803 136379803 G T TMEM8C Silent p.T207T 0.26 TCGA-W3-AA1V-06 9 137313619 137313619 C T RXRA Missense_Mutation p.P293L 0.42 deleterious(0.03) benign(0.04) TCGA-W3-AA1V-06 9 137328371 137328371 G A RXRA Missense_Mutation p.E434K 0.37 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 9 137600430 137600430 G A COL5A1 Intron 0.71 TCGA-W3-AA1V-06 9 137620589 137620589 G A COL5A1 Missense_Mutation p.G287E 0.28 benign(0.189) TCGA-W3-AA1V-06 9 137645736 137645736 A T COL5A1 Missense_Mutation p.D587V 0.27 probably_damaging(0.999) TCGA-W3-AA1V-06 9 137645737 137645737 C T COL5A1 Silent p.D587D 0.29 TCGA-W3-AA1V-06 9 138387372 138387372 C T C9orf116 Silent p.E104E 0.37 TCGA-W3-AA1V-06 9 138415823 138415823 G A LCN1 Silent p.G130G 1.00 TCGA-W3-AA1V-06 9 138645829 138645829 G A KCNT1 Missense_Mutation p.E161K 0.37 tolerated(0.23) benign(0.001) TCGA-W3-AA1V-06 9 138678084 138678084 G A KCNT1 Silent p.R1073R 0.50 TCGA-W3-AA1V-06 9 138713771 138713771 C T CAMSAP1 Silent p.K912K 0.67 TCGA-W3-AA1V-06 9 139250932 139250932 G A GPSM1 Missense_Mutation p.G584E 0.73 tolerated(0.08) benign(0.162) TCGA-W3-AA1V-06 9 139307020 139307020 C T PMPCA Missense_Mutation p.S118L 0.88 tolerated(0.27) benign(0.3) TCGA-W3-AA1V-06 9 139734622 139734622 C T RABL6 Silent p.T650T 0.35 TCGA-W3-AA1V-06 9 139734623 139734623 C T RABL6 Missense_Mutation p.P651S 0.35 tolerated_low_confidence(0.46) unknown(0) TCGA-W3-AA1V-06 9 139877920 139877920 C T LCNL1 5'UTR 0.94 TCGA-W3-AA1V-06 9 139914806 139914806 G C ABCA2 Silent p.V469V 0.81 TCGA-W3-AA1V-06 9 140034154 140034154 C T GRIN1 Silent p.I72I 0.28 TCGA-W3-AA1V-06 9 140267999 140267999 C T EXD3 Missense_Mutation p.G58E 0.38 deleterious(0.02) benign(0.084) TCGA-W3-AA1V-06 9 140938302 140938302 C T CACNA1B Silent p.P1121P 0.34 TCGA-W3-AA1V-06 9 14848696 14848696 C T FREM1 Missense_Mutation p.D410N 0.60 deleterious(0) possibly_damaging(0.67) TCGA-W3-AA1V-06 9 16437321 16437321 G A BNC2 Missense_Mutation p.R291C 0.28 deleterious(0) probably_damaging(0.974) TCGA-W3-AA1V-06 9 16552722 16552722 G A BNC2 Nonsense_Mutation p.Q159* 0.43 TCGA-W3-AA1V-06 9 17394632 17394632 C T CNTLN Missense_Mutation p.S727F 0.62 tolerated(0.07) possibly_damaging(0.757) TCGA-W3-AA1V-06 9 2056842 2056842 C T SMARCA2 Silent p.H448H 0.36 TCGA-W3-AA1V-06 9 2056843 2056843 C T SMARCA2 Nonsense_Mutation p.Q449* 0.36 TCGA-W3-AA1V-06 9 21187099 21187099 C T IFNA4 Silent p.R144R 0.32 TCGA-W3-AA1V-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.77 TCGA-W3-AA1V-06 9 21971187 21971187 G A CDKN2A Silent p.A57A 0.77 TCGA-W3-AA1V-06 9 23692788 23692788 G A ELAVL2 Silent p.L283L 0.68 TCGA-W3-AA1V-06 9 27109633 27109633 C T TEK Silent p.L15L 0.35 TCGA-W3-AA1V-06 9 27229216 27229216 G A TEK Missense_Mutation p.E1121K 0.66 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1V-06 9 27548389 27548389 G A C9orf72 Missense_Mutation p.R431W 0.31 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1V-06 9 32631434 32631434 G A TAF1L Missense_Mutation p.H1382Y 0.31 deleterious(0.04) possibly_damaging(0.733) TCGA-W3-AA1V-06 9 32631964 32631964 C T TAF1L Missense_Mutation p.R1205Q 0.78 deleterious(0.01) benign(0.03) TCGA-W3-AA1V-06 9 32632221 32632221 C T TAF1L Missense_Mutation p.M1119I 0.36 tolerated(0.06) benign(0.14) TCGA-W3-AA1V-06 9 32632916 32632916 G A TAF1L Missense_Mutation p.R888C 0.30 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 9 33798527 33798527 G A PRSS3 Silent p.L223L 0.65 TCGA-W3-AA1V-06 9 33799082 33799082 G A PRSS3 Nonsense_Mutation p.W273* 0.36 TCGA-W3-AA1V-06 9 33948669 33948669 A T UBAP2 Intron 0.44 TCGA-W3-AA1V-06 9 34709522 34709522 C T CCL21 Missense_Mutation p.G116R 0.35 tolerated(0.34) benign(0.092) TCGA-W3-AA1V-06 9 35094279 35094279 G C PIGO Missense_Mutation p.P197A 0.16 deleterious(0.01) possibly_damaging(0.452) TCGA-W3-AA1V-06 9 35366947 35366947 C T UNC13B Missense_Mutation p.P391S 0.65 tolerated_low_confidence(0.34) benign(0) TCGA-W3-AA1V-06 9 35606022 35606022 G A TESK1 Missense_Mutation p.M87I 0.57 deleterious(0.03) possibly_damaging(0.627) TCGA-W3-AA1V-06 9 35685712 35685712 G A TPM2 Silent p.A102A 0.70 TCGA-W3-AA1V-06 9 35712047 35712047 G A TLN1 Silent p.A1212A 0.30 TCGA-W3-AA1V-06 9 35741815 35741815 G A GBA2 Missense_Mutation p.L214F 0.64 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 9 35826155 35826155 C T FAM221B Missense_Mutation p.E2K 0.87 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 9 37707446 37707446 G A FRMPD1 Silent p.R45R 0.84 TCGA-W3-AA1V-06 9 37746754 37746754 C T FRMPD1 Silent p.S1575S 0.71 TCGA-W3-AA1V-06 9 37955896 37955896 G A SHB Missense_Mutation p.P404S 0.55 deleterious(0.04) benign(0.128) TCGA-W3-AA1V-06 9 3898869 3898869 G A GLIS3 Intron 0.47 TCGA-W3-AA1V-06 9 39140552 39140552 G A CNTNAP3 Missense_Mutation p.P614S 0.75 deleterious(0.03) benign(0.178) TCGA-W3-AA1V-06 9 39171400 39171400 G A CNTNAP3 Silent p.F433F 0.30 TCGA-W3-AA1V-06 9 39888059 39888059 C T SPATA31A2 Missense_Mutation p.S349L 0.33 tolerated(0.1) possibly_damaging(0.765) TCGA-W3-AA1V-06 9 399218 399218 C T DOCK8 Missense_Mutation p.R1065W 0.64 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1V-06 9 43626979 43626979 G A SPATA31A6 Missense_Mutation p.P570S 0.26 tolerated(0.77) benign(0.227) TCGA-W3-AA1V-06 9 43627520 43627520 C T SPATA31A6 Silent p.S389S 0.35 TCGA-W3-AA1V-06 9 5080277 5080277 C T JAK2 Missense_Mutation p.P727L 0.33 tolerated(0.06) possibly_damaging(0.697) TCGA-W3-AA1V-06 9 5089813 5089813 C T JAK2 Missense_Mutation p.S904F 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 9 6605161 6605161 C T GLDC Silent p.T277T 0.31 TCGA-W3-AA1V-06 9 710873 710873 C T KANK1 Missense_Mutation p.P36L 0.65 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 9 71144603 71144603 G A PGM5 3'UTR 0.26 TCGA-W3-AA1V-06 9 713348 713348 C T KANK1 Missense_Mutation p.S861F 0.74 deleterious(0.03) possibly_damaging(0.769) TCGA-W3-AA1V-06 9 71628376 71628376 G A PRKACG Silent p.I211I 0.60 TCGA-W3-AA1V-06 9 73168213 73168213 C T TRPM3 Silent p.Q1067Q 0.74 TCGA-W3-AA1V-06 9 73213514 73213514 C T TRPM3 Missense_Mutation p.D945N 0.86 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 9 77257330 77257330 C T RORB Missense_Mutation p.A79V 0.34 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 9 77282780 77282780 G A RORB Silent p.E358E 0.25 TCGA-W3-AA1V-06 9 77442735 77442735 C T TRPM6 Missense_Mutation p.R267K 0.25 tolerated(0.07) possibly_damaging(0.724) TCGA-W3-AA1V-06 9 77457148 77457148 C T TRPM6 Silent p.T88T 0.44 TCGA-W3-AA1V-06 9 78601132 78601132 G A PCSK5 Missense_Mutation p.D128N 0.29 deleterious(0.05) benign(0.093) TCGA-W3-AA1V-06 9 78804109 78804109 C G PCSK5 Missense_Mutation p.S827C 0.70 deleterious(0) possibly_damaging(0.897) TCGA-W3-AA1V-06 9 78804110 78804110 T A PCSK5 Silent p.S827S 0.70 TCGA-W3-AA1V-06 9 78943050 78943050 G A PCSK5 Missense_Mutation p.D1462N 0.72 tolerated(0.06) possibly_damaging(0.827) TCGA-W3-AA1V-06 9 79117954 79117954 G A GCNT1 Missense_Mutation p.M219I 0.64 deleterious(0.02) benign(0.061) TCGA-W3-AA1V-06 9 79320216 79320216 G A PRUNE2 Missense_Mutation p.S2325F 0.38 tolerated(0.07) probably_damaging(0.99) TCGA-W3-AA1V-06 9 84530466 84530466 C T SPATA31D5P RNA 0.30 TCGA-W3-AA1V-06 9 84562829 84562829 G A RP11-383M4.6 Intron 0.50 TCGA-W3-AA1V-06 9 84605769 84605769 C T SPATA31D1 Silent p.P128P 0.84 TCGA-W3-AA1V-06 9 84607008 84607008 C T SPATA31D1 Silent p.S541S 0.36 TCGA-W3-AA1V-06 9 84609668 84609668 C T SPATA31D1 Missense_Mutation p.P1428L 0.67 tolerated(0.4) benign(0.157) TCGA-W3-AA1V-06 9 87317290 87317290 T A NTRK2 Missense_Mutation p.F105L 0.32 tolerated(0.32) benign(0.01) TCGA-W3-AA1V-06 9 90322091 90322091 C T DAPK1 Missense_Mutation p.P1369S 0.69 tolerated(0.27) benign(0.004) TCGA-W3-AA1V-06 9 90500042 90500042 G A SPATA31E1 Missense_Mutation p.G214R 0.22 tolerated(0.31) possibly_damaging(0.455) TCGA-W3-AA1V-06 9 91150545 91150545 G A NXNL2 Missense_Mutation p.E66K 0.75 deleterious(0) possibly_damaging(0.907) TCGA-W3-AA1V-06 9 91616097 91616097 C T S1PR3 5'UTR 0.72 TCGA-W3-AA1V-06 9 91953452 91953452 C T SECISBP2 Missense_Mutation p.S390L 0.19 tolerated(0.08) benign(0.009) TCGA-W3-AA1V-06 9 92007402 92007402 G T SEMA4D Silent p.P186P 0.68 TCGA-W3-AA1V-06 9 93375825 93375825 C T DIRAS2 Silent p.E95E 0.34 TCGA-W3-AA1V-06 9 95033928 95033928 G A IARS Missense_Mutation p.R334W 0.66 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 9 95838116 95838116 C T SUSD3 Missense_Mutation p.R47C 0.79 deleterious(0) probably_damaging(0.985) TCGA-W3-AA1V-06 9 95846823 95846823 C T SUSD3 Missense_Mutation p.H188Y 0.73 tolerated(1) benign(0) TCGA-W3-AA1V-06 9 96320115 96320115 C T FAM120A Nonsense_Mutation p.Q831* 0.65 TCGA-W3-AA1V-06 9 97062126 97062126 C T ZNF169 Missense_Mutation p.P96S 0.34 tolerated(1) benign(0) TCGA-W3-AA1V-06 9 97062384 97062384 G A ZNF169 Missense_Mutation p.G182R 0.20 tolerated(0.51) benign(0.005) TCGA-W3-AA1V-06 9 990190 990190 G A DMRT3 Missense_Mutation p.E202K 0.60 deleterious(0.04) benign(0.023) TCGA-W3-AA1V-06 9 99797913 99797913 G A CTSV Silent p.V228V 0.52 TCGA-W3-AA1V-06 X 100532676 100532676 C T TAF7L Silent p.K289K 0.75 TCGA-W3-AA1V-06 X 101139280 101139280 C T ZMAT1 Silent p.V373V 0.71 TCGA-W3-AA1V-06 X 101572322 101572322 C T NXF2 Intron 0.33 TCGA-W3-AA1V-06 X 101912372 101912372 C T GPRASP1 Silent p.I1177I 0.68 TCGA-W3-AA1V-06 X 102529354 102529354 C T TCEAL5 Silent p.G46G 0.67 TCGA-W3-AA1V-06 X 10417567 10417567 G A MID1 Silent p.I615I 0.73 TCGA-W3-AA1V-06 X 105152992 105152992 G A NRK Silent p.V454V 0.62 TCGA-W3-AA1V-06 X 105279248 105279248 C T SERPINA7 Missense_Mutation p.E251K 0.73 tolerated(0.1) benign(0.048) TCGA-W3-AA1V-06 X 106172121 106172121 C T CLDN2 Silent p.F221F 0.79 TCGA-W3-AA1V-06 X 106845406 106845406 G A FRMPD3 Silent p.G1412G 0.93 TCGA-W3-AA1V-06 X 107840786 107840786 G A COL4A5 Silent p.P589P 0.65 TCGA-W3-AA1V-06 X 107850111 107850111 C T COL4A5 Missense_Mutation p.P795L 0.77 unknown(0) TCGA-W3-AA1V-06 X 107977487 107977487 C T IRS4 Silent p.E696E 0.70 TCGA-W3-AA1V-06 X 108631794 108631794 G A GUCY2F Silent p.I960I 0.68 TCGA-W3-AA1V-06 X 108696750 108696750 C T GUCY2F Silent p.G457G 0.71 TCGA-W3-AA1V-06 X 108718809 108718809 C T GUCY2F Missense_Mutation p.M119I 0.81 tolerated(0.35) probably_damaging(0.968) TCGA-W3-AA1V-06 X 110496420 110496420 C T CAPN6 Missense_Mutation p.E108K 0.60 deleterious(0) possibly_damaging(0.874) TCGA-W3-AA1V-06 X 111025190 111025190 C T TRPC5 Silent p.R691R 0.79 TCGA-W3-AA1V-06 X 111090573 111090573 G A TRPC5 Missense_Mutation p.S490L 0.65 deleterious(0.04) probably_damaging(0.914) TCGA-W3-AA1V-06 X 111155756 111155756 G A TRPC5 Silent p.F221F 0.69 TCGA-W3-AA1V-06 X 11157248 11157248 G A ARHGAP6 Missense_Mutation p.P887L 0.93 tolerated_low_confidence(0.54) benign(0.001) TCGA-W3-AA1V-06 X 11316876 11316876 A G AMELX Missense_Mutation p.N132S 0.85 tolerated(0.83) unknown(0) TCGA-W3-AA1V-06 X 115593162 115593162 C T CT83 Missense_Mutation p.E30K 0.87 tolerated(0.27) benign(0.013) TCGA-W3-AA1V-06 X 118223532 118223532 C T KIAA1210 Missense_Mutation p.G554E 0.73 tolerated(0.32) benign(0.096) TCGA-W3-AA1V-06 X 118605042 118605042 C T SLC25A5 3'UTR 0.76 TCGA-W3-AA1V-06 X 119510247 119510247 C T ATP1B4 Missense_Mutation p.R258C 0.67 tolerated(0.14) possibly_damaging(0.697) TCGA-W3-AA1V-06 X 120008784 120008784 C T CT47B1 Silent p.E247E 0.77 TCGA-W3-AA1V-06 X 123680746 123680746 G A TENM1 Missense_Mutation p.P877S 0.63 tolerated(0.07) benign(0) TCGA-W3-AA1V-06 X 123787622 123787622 C T TENM1 Missense_Mutation p.G394R 0.73 deleterious_low_confidence(0.02) possibly_damaging(0.67) TCGA-W3-AA1V-06 X 127186227 127186227 G A ACTRT1 5'UTR 0.79 TCGA-W3-AA1V-06 X 12734580 12734580 A G FRMPD4 Missense_Mutation p.T668A 0.74 tolerated_low_confidence(0.09) benign(0.002) TCGA-W3-AA1V-06 X 128657245 128657245 G A SMARCA1 Nonsense_Mutation p.Q35* 0.80 TCGA-W3-AA1V-06 X 128896036 128896036 C T XPNPEP2 Missense_Mutation p.S553F 0.75 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 12904579 12904579 G A TLR7 Missense_Mutation p.E318K 0.76 tolerated(0.62) benign(0.03) TCGA-W3-AA1V-06 X 129801665 129801665 C T ENOX2 Missense_Mutation p.R278Q 0.62 deleterious(0.02) benign(0.09) TCGA-W3-AA1V-06 X 130416591 130416591 C T IGSF1 Missense_Mutation p.G358E 0.74 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1V-06 X 130417122 130417122 C T IGSF1 Missense_Mutation p.V262I 0.62 tolerated(0.44) benign(0.023) TCGA-W3-AA1V-06 X 131212748 131212748 G A FRMD7 Missense_Mutation p.P433S 0.85 tolerated(0.09) benign(0.027) TCGA-W3-AA1V-06 X 132351825 132351825 A G TFDP3 Missense_Mutation p.Y155H 0.80 deleterious(0.04) benign(0) TCGA-W3-AA1V-06 X 132473281 132473281 G A GPC4 Silent p.F83F 0.69 TCGA-W3-AA1V-06 X 1325430 1325430 G A CRLF2 Missense_Mutation p.S82L 0.35 deleterious(0.02) possibly_damaging(0.457) TCGA-W3-AA1V-06 X 132670073 132670073 A T GPC3 3'UTR 0.57 TCGA-W3-AA1V-06 X 133632681 133632681 C T HPRT1 Silent p.A192A 0.61 TCGA-W3-AA1V-06 X 133634156 133634156 C T HPRT1 3'UTR 0.73 TCGA-W3-AA1V-06 X 134421132 134421132 C T ZNF75D Silent p.S490S 0.80 TCGA-W3-AA1V-06 X 134690136 134690136 C T DDX26B Missense_Mutation p.P368L 0.75 deleterious(0) probably_damaging(0.987) TCGA-W3-AA1V-06 X 135429961 135429961 C T GPR112 Missense_Mutation p.P1366S 0.77 tolerated(0.06) benign(0.091) TCGA-W3-AA1V-06 X 135430371 135430371 C T GPR112 Silent p.S1502S 0.78 TCGA-W3-AA1V-06 X 135430590 135430590 A C GPR112 Silent p.A1575A 0.77 TCGA-W3-AA1V-06 X 135432170 135432170 C T GPR112 Missense_Mutation p.S2102F 0.64 tolerated(0.06) possibly_damaging(0.542) TCGA-W3-AA1V-06 X 138711861 138711861 A C MCF2 Missense_Mutation p.L204R 0.68 tolerated(0.19) benign(0.061) TCGA-W3-AA1V-06 X 139866492 139866492 G A CDR1 Missense_Mutation p.P14S 0.75 tolerated(0.53) possibly_damaging(0.803) TCGA-W3-AA1V-06 X 139866518 139866518 T C CDR1 Missense_Mutation p.E5G 0.74 deleterious(0.03) possibly_damaging(0.607) TCGA-W3-AA1V-06 X 140270858 140270858 C T LDOC1 Missense_Mutation p.D117N 0.76 tolerated(0.77) benign(0.018) TCGA-W3-AA1V-06 X 14038252 14038252 G A GEMIN8 Silent p.I139I 0.84 TCGA-W3-AA1V-06 X 140985027 140985027 C T MAGEC3 Missense_Mutation p.P495S 0.72 tolerated(0.07) probably_damaging(0.977) TCGA-W3-AA1V-06 X 140985237 140985237 G A MAGEC3 Missense_Mutation p.E565K 0.64 deleterious(0.05) possibly_damaging(0.572) TCGA-W3-AA1V-06 X 140993490 140993490 G A MAGEC1 Silent p.Q100Q 0.71 TCGA-W3-AA1V-06 X 140993736 140993736 C T MAGEC1 Silent p.S182S 0.60 TCGA-W3-AA1V-06 X 140995881 140995881 G A MAGEC1 Silent p.L897L 0.66 TCGA-W3-AA1V-06 X 142717196 142717196 C T SLITRK4 Missense_Mutation p.E577K 0.82 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA1V-06 X 142718833 142718833 G A SLITRK4 Missense_Mutation p.S31F 0.79 tolerated(0.64) benign(0.352) TCGA-W3-AA1V-06 X 142795250 142795250 G A SPANXN2 Missense_Mutation p.S143L 0.60 tolerated(0.15) unknown(0) TCGA-W3-AA1V-06 X 144337528 144337528 G A SPANXN1 3'UTR 0.60 TCGA-W3-AA1V-06 X 145082641 145082641 G A MIR891B RNA 0.54 TCGA-W3-AA1V-06 X 147062917 147062917 G A FMR1NB 5'UTR 0.83 TCGA-W3-AA1V-06 X 148055132 148055132 C T AFF2 Silent p.L1133L 0.90 TCGA-W3-AA1V-06 X 14876007 14876007 G A FANCB Missense_Mutation p.P392S 0.64 tolerated(0.12) benign(0.409) TCGA-W3-AA1V-06 X 149638621 149638621 G A MAMLD1 Missense_Mutation p.G234E 0.67 deleterious(0.02) benign(0.295) TCGA-W3-AA1V-06 X 149671642 149671642 C T MAMLD1 Intron 0.68 TCGA-W3-AA1V-06 X 149840127 149840127 G T MTM1 3'UTR 0.75 TCGA-W3-AA1V-06 X 151283543 151283543 G A RP11-1007I13.4 RNA 0.83 TCGA-W3-AA1V-06 X 151358362 151358362 G A GABRA3 Missense_Mutation p.S328F 0.73 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 151366229 151366229 G A GABRA3 Silent p.F269F 0.74 TCGA-W3-AA1V-06 X 151366241 151366241 C T GABRA3 Missense_Mutation p.M265I 0.78 deleterious(0) probably_damaging(0.95) TCGA-W3-AA1V-06 X 152037334 152037334 C T NSDHL Missense_Mutation p.H266Y 0.75 deleterious(0.04) possibly_damaging(0.845) TCGA-W3-AA1V-06 X 152159629 152159629 C T PNMA5 Missense_Mutation p.E172K 0.85 tolerated(0.06) probably_damaging(0.988) TCGA-W3-AA1V-06 X 152981046 152981046 G A BCAP31 Missense_Mutation p.R165C 0.79 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 152981047 152981047 G A BCAP31 Silent p.F164F 0.83 TCGA-W3-AA1V-06 X 153172194 153172194 G A AVPR2 3'UTR 0.89 TCGA-W3-AA1V-06 X 153173223 153173223 G A ARHGAP4 Missense_Mutation p.S974F 0.67 tolerated_low_confidence(0.12) benign(0.004) TCGA-W3-AA1V-06 X 153224141 153224141 G A HCFC1 Missense_Mutation p.P561L 0.68 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1V-06 X 153421921 153421921 C T OPN1LW Silent p.F299F 0.71 TCGA-W3-AA1V-06 X 153580707 153580707 G A FLNA Missense_Mutation p.P2204L 0.74 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1V-06 X 153593323 153593323 G A FLNA Missense_Mutation p.P565L 0.83 deleterious(0) probably_damaging(0.992) TCGA-W3-AA1V-06 X 153696234 153696234 C T PLXNA3 Missense_Mutation p.A1237V 0.81 tolerated(0.83) benign(0.009) TCGA-W3-AA1V-06 X 153761007 153761007 G A G6PD Silent p.F384F 0.90 TCGA-W3-AA1V-06 X 153997495 153997495 C T DKC1 Silent p.N275N 0.78 TCGA-W3-AA1V-06 X 154132301 154132301 G A F8 Nonsense_Mutation p.R1960* 0.85 TCGA-W3-AA1V-06 X 154159083 154159083 C T F8 Silent p.G994G 0.79 TCGA-W3-AA1V-06 X 154159596 154159596 G A F8 Silent p.S823S 0.78 TCGA-W3-AA1V-06 X 154317589 154317589 T C BRCC3 Missense_Mutation p.L152P 0.64 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1V-06 X 155003978 155003978 G A SPRY3 Missense_Mutation p.E149K 0.35 tolerated(0.43) benign(0.067) TCGA-W3-AA1V-06 X 155004272 155004272 C T SPRY3 Silent p.L247L 0.26 TCGA-W3-AA1V-06 X 1712496 1712496 C T AKAP17A Silent p.S47S 0.33 TCGA-W3-AA1V-06 X 1712712 1712712 C T AKAP17A Silent p.I119I 0.36 TCGA-W3-AA1V-06 X 17819158 17819158 G A RAI2 Missense_Mutation p.P325S 0.77 tolerated(0.13) unknown(0) TCGA-W3-AA1V-06 X 18275015 18275015 G A SCML2 Missense_Mutation p.S470F 0.70 tolerated(0.5) benign(0.001) TCGA-W3-AA1V-06 X 18665383 18665383 T C RS1 Missense_Mutation p.N85S 0.73 tolerated(0.82) benign(0.012) TCGA-W3-AA1V-06 X 19983250 19983250 G A CXorf23 Missense_Mutation p.L396F 0.22 tolerated(0.25) benign(0.047) TCGA-W3-AA1V-06 X 20028907 20028907 G A MAP7D2 3'UTR 0.70 TCGA-W3-AA1V-06 X 20028908 20028908 G A MAP7D2 3'UTR 0.70 TCGA-W3-AA1V-06 X 20043889 20043889 C A MAP7D2 Nonsense_Mutation p.G397* 0.75 TCGA-W3-AA1V-06 X 22132633 22132633 G A PHEX Missense_Mutation p.E411K 0.67 deleterious(0.02) probably_damaging(0.916) TCGA-W3-AA1V-06 X 24227157 24227157 G A ZFX Missense_Mutation p.A412T 0.76 deleterious(0.03) probably_damaging(0.989) TCGA-W3-AA1V-06 X 26213034 26213034 C T MAGEB6 Silent p.F357F 0.72 TCGA-W3-AA1V-06 X 27766500 27766500 C T DCAF8L2 Silent p.F496F 0.89 TCGA-W3-AA1V-06 X 27998631 27998631 G A DCAF8L1 Missense_Mutation p.S274L 0.69 tolerated(0.18) benign(0.065) TCGA-W3-AA1V-06 X 29417344 29417344 G A IL1RAPL1 Missense_Mutation p.E208K 0.63 tolerated(0.15) probably_damaging(0.995) TCGA-W3-AA1V-06 X 3019251 3019251 G A ARSF Missense_Mutation p.G364E 0.77 deleterious(0) possibly_damaging(0.886) TCGA-W3-AA1V-06 X 30269211 30269211 C T MAGEB1 Silent p.L201L 0.60 TCGA-W3-AA1V-06 X 3030307 3030307 G A ARSF Missense_Mutation p.G495R 0.63 deleterious(0.01) probably_damaging(0.952) TCGA-W3-AA1V-06 X 3030553 3030553 G A ARSF Missense_Mutation p.E577K 0.73 deleterious(0.02) benign(0.319) TCGA-W3-AA1V-06 X 3229203 3229203 G A MXRA5 Silent p.T2347T 0.63 TCGA-W3-AA1V-06 X 3236022 3236022 G A MXRA5 Silent p.T1900T 0.69 TCGA-W3-AA1V-06 X 3238090 3238090 C T MXRA5 Missense_Mutation p.G1879E 0.86 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1V-06 X 3238276 3238276 G A MXRA5 Missense_Mutation p.S1817F 0.91 deleterious(0.03) benign(0.002) TCGA-W3-AA1V-06 X 3240148 3240148 G A MXRA5 Missense_Mutation p.S1193L 0.84 tolerated(0.18) benign(0.001) TCGA-W3-AA1V-06 X 3240517 3240517 C T MXRA5 Missense_Mutation p.G1070E 0.62 tolerated(0.32) benign(0.003) TCGA-W3-AA1V-06 X 3241660 3241660 G A MXRA5 Missense_Mutation p.S689F 0.69 deleterious(0.01) possibly_damaging(0.733) TCGA-W3-AA1V-06 X 34961862 34961862 C T FAM47B Missense_Mutation p.S305F 0.58 deleterious(0.03) probably_damaging(0.994) TCGA-W3-AA1V-06 X 36103585 36103585 C T CHDC2 Missense_Mutation p.P191S 0.58 tolerated(0.13) probably_damaging(1) TCGA-W3-AA1V-06 X 37029496 37029496 G A FAM47C Missense_Mutation p.G1005R 0.78 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1V-06 X 37660539 37660539 C T CYBB Silent p.L279L 0.72 TCGA-W3-AA1V-06 X 38178179 38178179 G A RPGR Silent p.T124T 0.61 TCGA-W3-AA1V-06 X 38178180 38178180 G A RPGR Missense_Mutation p.T124I 0.61 benign(0.254) TCGA-W3-AA1V-06 X 43698194 43698194 G A MAOB Missense_Mutation p.R67C 0.68 deleterious(0) possibly_damaging(0.523) TCGA-W3-AA1V-06 X 46472796 46472796 G C SLC9A7 Silent p.P618P 0.61 TCGA-W3-AA1V-06 X 46472797 46472797 G A SLC9A7 Missense_Mutation p.P618L 0.63 deleterious(0) possibly_damaging(0.703) TCGA-W3-AA1V-06 X 47070479 47070479 C T UBA1 Silent p.A773A 0.86 TCGA-W3-AA1V-06 X 47272597 47272597 C T ZNF157 Silent p.I375I 0.58 TCGA-W3-AA1V-06 X 47979002 47979002 G C SSX6 RNA 0.76 TCGA-W3-AA1V-06 X 48163127 48163127 C T SSX9 RNA 0.71 TCGA-W3-AA1V-06 X 48751426 48751426 G A TIMM17B Silent p.N141N 0.73 TCGA-W3-AA1V-06 X 50051865 50051865 G A CCNB3 Silent p.K232K 0.71 TCGA-W3-AA1V-06 X 53656470 53656470 A G HUWE1 Silent p.L320L 0.76 TCGA-W3-AA1V-06 X 53656480 53656480 T G HUWE1 Missense_Mutation p.D317A 0.75 probably_damaging(0.958) TCGA-W3-AA1V-06 X 54783767 54783767 G A ITIH6 Missense_Mutation p.P914S 0.62 tolerated(0.16) benign(0.021) TCGA-W3-AA1V-06 X 54815044 54815044 C T ITIH6 Missense_Mutation p.G219R 0.87 deleterious(0.01) possibly_damaging(0.671) TCGA-W3-AA1V-06 X 55650490 55650490 A T FOXR2 Nonsense_Mutation p.K116* 0.78 TCGA-W3-AA1V-06 X 57405199 57405199 G A FAAH2 Missense_Mutation p.M286I 0.79 tolerated(0.16) benign(0.241) TCGA-W3-AA1V-06 X 6069111 6069111 C T NLGN4X Missense_Mutation p.D133N 0.75 tolerated(0.11) probably_damaging(0.965) TCGA-W3-AA1V-06 X 64139069 64139069 C T ZC4H2 Silent p.Q138Q 0.79 TCGA-W3-AA1V-06 X 65409660 65409660 A T HEPH Missense_Mutation p.T369S 0.86 tolerated(0.54) benign(0.082) TCGA-W3-AA1V-06 X 65418723 65418723 G A HEPH Missense_Mutation p.G627R 0.61 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 65418724 65418724 G A HEPH Missense_Mutation p.G627E 0.56 deleterious(0.05) probably_damaging(1) TCGA-W3-AA1V-06 X 65418733 65418733 A C HEPH Missense_Mutation p.K630T 0.63 deleterious(0) probably_damaging(0.915) TCGA-W3-AA1V-06 X 66943676 66943676 C T AR Missense_Mutation p.T919I 0.67 tolerated(0.09) benign(0.257) TCGA-W3-AA1V-06 X 68382302 68382302 G A PJA1 Silent p.I260I 0.58 TCGA-W3-AA1V-06 X 69419706 69419706 T C DGAT2L6 Missense_Mutation p.Y81H 0.71 tolerated(0.79) probably_damaging(0.97) TCGA-W3-AA1V-06 X 69478619 69478619 C T P2RY4 Missense_Mutation p.V286M 0.69 tolerated(0.43) benign(0.065) TCGA-W3-AA1V-06 X 69902556 69902556 A C TEX11 Missense_Mutation p.L390R 0.76 deleterious(0) benign(0.142) TCGA-W3-AA1V-06 X 70072950 70072950 G A TEX11 Silent p.D168D 1.00 TCGA-W3-AA1V-06 X 70674707 70674707 G A TAF1 Silent p.Q1666Q 0.77 TCGA-W3-AA1V-06 X 71838562 71838562 C T PHKA1 Missense_Mutation p.M789I 0.73 tolerated(0.34) benign(0.004) TCGA-W3-AA1V-06 X 71856188 71856188 C T PHKA1 Missense_Mutation p.G503E 0.68 deleterious(0) possibly_damaging(0.903) TCGA-W3-AA1V-06 X 72433482 72433482 G A NAP1L2 Missense_Mutation p.L283F 0.75 deleterious(0.02) probably_damaging(0.997) TCGA-W3-AA1V-06 X 72433884 72433884 C T NAP1L2 Missense_Mutation p.E149K 0.71 deleterious(0.03) probably_damaging(0.997) TCGA-W3-AA1V-06 X 72434194 72434194 C T NAP1L2 Silent p.G45G 0.54 TCGA-W3-AA1V-06 X 73062742 73062742 G A XIST RNA 0.63 TCGA-W3-AA1V-06 X 73062743 73062743 G A XIST RNA 0.63 TCGA-W3-AA1V-06 X 73063722 73063722 G A XIST RNA 0.70 TCGA-W3-AA1V-06 X 73962782 73962782 G A KIAA2022 Missense_Mutation p.P537L 0.74 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 73963455 73963455 G A KIAA2022 Nonsense_Mutation p.R313* 0.78 TCGA-W3-AA1V-06 X 74273269 74273269 T A ABCB7 Missense_Mutation p.E733V 0.56 deleterious(0.03) possibly_damaging(0.907) TCGA-W3-AA1V-06 X 74273270 74273270 C T ABCB7 Missense_Mutation p.E733K 0.61 deleterious(0.03) benign(0.2) TCGA-W3-AA1V-06 X 75650177 75650177 T A MAGEE1 Silent p.L618L 0.80 TCGA-W3-AA1V-06 X 76937663 76937663 G A ATRX Missense_Mutation p.P1029S 0.56 benign(0.002) TCGA-W3-AA1V-06 X 77218246 77218246 C T ATP7A Intron 0.59 TCGA-W3-AA1V-06 X 77369555 77369555 G A PGK1 Silent p.E105E 0.80 TCGA-W3-AA1V-06 X 77913668 77913668 C T ZCCHC5 Missense_Mutation p.E84K 0.78 tolerated_low_confidence(0.3) benign(0.005) TCGA-W3-AA1V-06 X 78010528 78010528 G A LPAR4 Silent p.L54L 0.79 TCGA-W3-AA1V-06 X 78426897 78426897 G A GPR174 Silent p.Q131Q 0.68 TCGA-W3-AA1V-06 X 78427010 78427010 T C GPR174 Missense_Mutation p.F169S 0.69 deleterious(0) probably_damaging(1) TCGA-W3-AA1V-06 X 79699082 79699082 T C FAM46D Silent p.F348F 0.92 TCGA-W3-AA1V-06 X 83320116 83320116 A G RPS6KA6 Silent p.L659L 0.74 TCGA-W3-AA1V-06 X 84525006 84525006 C T ZNF711 Intron 0.90 TCGA-W3-AA1V-06 X 84585992 84585992 G A POF1B Missense_Mutation p.H273Y 0.82 tolerated(0.61) benign(0.004) TCGA-W3-AA1V-06 X 86869550 86869550 C T KLHL4 Missense_Mutation p.S235F 0.69 tolerated(0.15) possibly_damaging(0.888) TCGA-W3-AA1V-06 X 86919768 86919768 G A KLHL4 Missense_Mutation p.D644N 0.83 tolerated(0.16) benign(0.137) TCGA-W3-AA1V-06 X 99551623 99551623 C T PCDH19 Silent p.L1033L 0.75 TCGA-W3-AA1V-06 X 99551865 99551865 C T PCDH19 Missense_Mutation p.E953K 0.72 tolerated(0.08) benign(0.006) TCGA-W3-AA1V-06 X 99917344 99917344 C T SRPX2 Missense_Mutation p.S112F 0.69 deleterious(0.01) probably_damaging(0.995) TCGA-W3-AA1V-06 Y 6114282 6114282 C T TSPY2 5'UTR 0.42 TCGA-W3-AA1V-06 Y 6115693 6115693 G A TSPY2 Missense_Mutation p.E219K 0.26 tolerated(0.12) probably_damaging(0.951) TCGA-W3-AA1W-06 10 101969405 101969405 C T CHUK Missense_Mutation p.G359R 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 10 102055922 102055922 T C PKD2L1 Missense_Mutation p.Y438C 0.16 deleterious(0) probably_damaging(0.969) TCGA-W3-AA1W-06 10 106074686 106074686 G A ITPRIP Missense_Mutation p.A375V 0.15 tolerated(0.56) benign(0.005) TCGA-W3-AA1W-06 10 107016615 107016615 G A SORCS3 Missense_Mutation p.A1126T 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 10 116048815 116048815 G A VWA2 Silent p.V563V 0.18 TCGA-W3-AA1W-06 10 116417820 116417820 G A ABLIM1 Missense_Mutation p.T47I 0.14 tolerated_low_confidence(0.23) benign(0.001) TCGA-W3-AA1W-06 10 117884873 117884873 C T GFRA1 Missense_Mutation p.G210E 0.23 tolerated(0.13) possibly_damaging(0.806) TCGA-W3-AA1W-06 10 122263367 122263367 C A PPAPDC1A Missense_Mutation p.Q32K 0.10 deleterious(0.02) possibly_damaging(0.714) TCGA-W3-AA1W-06 10 122349030 122349030 G A PPAPDC1A 3'UTR 0.17 TCGA-W3-AA1W-06 10 124214292 124214292 G A ARMS2 Missense_Mutation p.G17R 0.12 tolerated_low_confidence(0.4) benign(0.036) TCGA-W3-AA1W-06 10 124392747 124392747 G A DMBT1 Silent p.G2017G 0.11 TCGA-W3-AA1W-06 10 135350720 135350720 G A CYP2E1 Missense_Mutation p.R374Q 0.17 tolerated(0.65) benign(0.008) TCGA-W3-AA1W-06 10 15255723 15255723 G A FAM171A1 Missense_Mutation p.H622Y 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1W-06 10 15617526 15617526 C T ITGA8 Missense_Mutation p.E814K 0.20 deleterious(0.03) probably_damaging(0.974) TCGA-W3-AA1W-06 10 16556485 16556485 C T C1QL3 3'UTR 0.34 TCGA-W3-AA1W-06 10 30318223 30318223 G A KIAA1462 Missense_Mutation p.P285L 0.13 tolerated(0.05) benign(0.258) TCGA-W3-AA1W-06 10 35333759 35333759 G A CUL2 Missense_Mutation p.H201Y 0.15 tolerated(0.08) possibly_damaging(0.49) TCGA-W3-AA1W-06 10 43692467 43692467 C T RASGEF1A Silent p.K435K 0.36 TCGA-W3-AA1W-06 10 44052680 44052680 G A ZNF239 Missense_Mutation p.A283V 0.15 tolerated(0.17) possibly_damaging(0.674) TCGA-W3-AA1W-06 10 50948864 50948864 G A OGDHL Missense_Mutation p.H678Y 0.17 deleterious(0) possibly_damaging(0.596) TCGA-W3-AA1W-06 10 50948865 50948865 G A OGDHL Silent p.L677L 0.17 TCGA-W3-AA1W-06 10 50960730 50960730 C T OGDHL Silent p.L144L 0.23 TCGA-W3-AA1W-06 10 52103655 52103655 C T SGMS1 Missense_Mutation p.E74K 0.16 tolerated(0.27) benign(0.117) TCGA-W3-AA1W-06 10 60994260 60994260 G C PHYHIPL Missense_Mutation p.K101N 0.12 deleterious(0.03) possibly_damaging(0.906) TCGA-W3-AA1W-06 10 61835916 61835916 G A ANK3 Missense_Mutation p.R1575W 0.16 probably_damaging(0.985) TCGA-W3-AA1W-06 10 62023733 62023733 G A ANK3 Nonsense_Mutation p.Q187* 0.21 TCGA-W3-AA1W-06 10 63525709 63525709 G A C10orf107 Missense_Mutation p.E189K 0.13 tolerated(0.15) probably_damaging(0.987) TCGA-W3-AA1W-06 10 67829071 67829071 G A CTNNA3 Silent p.F718F 0.14 TCGA-W3-AA1W-06 10 69908126 69908126 G A MYPN Missense_Mutation p.E383K 0.20 tolerated(0.8) benign(0.004) TCGA-W3-AA1W-06 10 72520352 72520352 G A ADAMTS14 Missense_Mutation p.G1142R 0.11 tolerated(0.13) benign(0.015) TCGA-W3-AA1W-06 10 73560446 73560446 C T CDH23 Silent p.I232I 0.08 TCGA-W3-AA1W-06 10 74702433 74702433 G A PLA2G12B Silent p.L93L 0.31 TCGA-W3-AA1W-06 10 75158116 75158116 G A ANXA7 Missense_Mutation p.P28S 0.33 tolerated(0.12) unknown(0) TCGA-W3-AA1W-06 10 75581483 75581483 G A CAMK2G Silent p.S370S 0.34 TCGA-W3-AA1W-06 10 7780677 7780677 G A ITIH2 Missense_Mutation p.G684E 0.12 tolerated(0.39) benign(0.003) TCGA-W3-AA1W-06 10 82098192 82098192 G A DYDC1 Intron 0.10 TCGA-W3-AA1W-06 10 87362142 87362142 C T GRID1 Missense_Mutation p.G973E 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1W-06 10 95395374 95395374 C T PDE6C Missense_Mutation p.P464S 0.07 tolerated(0.44) benign(0.004) TCGA-W3-AA1W-06 10 95399958 95399958 C T PDE6C Silent p.F538F 0.14 TCGA-W3-AA1W-06 10 98763918 98763918 C T SLIT1 Missense_Mutation p.V1258M 0.13 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1W-06 11 102667747 102667747 C T MMP1 Missense_Mutation p.G166E 0.17 tolerated(0.13) probably_damaging(0.975) TCGA-W3-AA1W-06 11 102819814 102819814 G A MMP13 Missense_Mutation p.P331S 0.13 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1W-06 11 103908199 103908199 G A DDI1 Missense_Mutation p.E217K 0.17 deleterious(0.02) benign(0.044) TCGA-W3-AA1W-06 11 108165732 108165732 A C ATM Silent p.R1619R 0.17 TCGA-W3-AA1W-06 11 111385682 111385682 G A C11orf88 Missense_Mutation p.R58K 0.26 tolerated(0.1) benign(0.073) TCGA-W3-AA1W-06 11 113283376 113283376 G A DRD2 Missense_Mutation p.P347L 0.10 tolerated(0.26) benign(0.102) TCGA-W3-AA1W-06 11 114568808 114568808 G A NXPE2 Silent p.G58G 0.25 TCGA-W3-AA1W-06 11 114568949 114568949 C T NXPE2 Silent p.T105T 0.13 TCGA-W3-AA1W-06 11 117152118 117152118 C T RNF214 Missense_Mutation p.R412C 0.43 deleterious(0) probably_damaging(0.931) TCGA-W3-AA1W-06 11 117391953 117391953 C T DSCAML1 Missense_Mutation p.E429K 0.19 tolerated(0.07) possibly_damaging(0.832) TCGA-W3-AA1W-06 11 120008550 120008550 C T TRIM29 Missense_Mutation p.E64K 0.18 tolerated_low_confidence(0.16) benign(0.005) TCGA-W3-AA1W-06 11 120831754 120831754 C T GRIK4 Missense_Mutation p.H671Y 0.10 deleterious(0) possibly_damaging(0.708) TCGA-W3-AA1W-06 11 121492902 121492902 C T SORL1 Silent p.I2032I 0.11 TCGA-W3-AA1W-06 11 123676808 123676808 G A OR6M1 Silent p.L84L 0.16 TCGA-W3-AA1W-06 11 123756140 123756140 G A TMEM225 5'UTR 0.27 TCGA-W3-AA1W-06 11 123847434 123847434 C T OR10S1 Missense_Mutation p.R322Q 0.20 tolerated(0.68) benign(0.001) TCGA-W3-AA1W-06 11 123848400 123848400 C T OR10S1 5'UTR 0.16 TCGA-W3-AA1W-06 11 124440812 124440812 C T OR8A1 Missense_Mutation p.S283F 0.27 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1W-06 11 124618387 124618387 G A VSIG2 Silent p.L250L 0.15 TCGA-W3-AA1W-06 11 128839518 128839518 G A ARHGAP32 Missense_Mutation p.P1850S 0.13 tolerated_low_confidence(0.93) benign(0.001) TCGA-W3-AA1W-06 11 130131604 130131604 G A ZBTB44 Silent p.F55F 0.19 TCGA-W3-AA1W-06 11 13378315 13378315 C A ARNTL Missense_Mutation p.P57H 0.14 tolerated(0.18) benign(0.358) TCGA-W3-AA1W-06 11 133790823 133790823 G A IGSF9B Nonsense_Mutation p.Q933* 0.15 TCGA-W3-AA1W-06 11 134119092 134119092 G A THYN1 Missense_Mutation p.S150F 0.11 deleterious(0.01) probably_damaging(0.926) TCGA-W3-AA1W-06 11 18955964 18955964 G A MRGPRX1 Missense_Mutation p.S123F 0.10 deleterious(0.01) possibly_damaging(0.869) TCGA-W3-AA1W-06 11 19076895 19076895 G A MRGPRX2 3'UTR 0.20 TCGA-W3-AA1W-06 11 19077348 19077348 G A MRGPRX2 Missense_Mutation p.S201F 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-W3-AA1W-06 11 20139913 20139913 G A NAV2 3'UTR 0.21 TCGA-W3-AA1W-06 11 20139915 20139915 G A NAV2 3'UTR 0.23 TCGA-W3-AA1W-06 11 36594922 36594922 T A RAG1 Missense_Mutation p.I23N 0.14 tolerated_low_confidence(0.09) benign(0.085) TCGA-W3-AA1W-06 11 40136959 40136959 C T LRRC4C Missense_Mutation p.R295Q 0.15 tolerated(0.11) benign(0.119) TCGA-W3-AA1W-06 11 40137159 40137159 C T LRRC4C Silent p.G228G 0.23 TCGA-W3-AA1W-06 11 47283239 47283239 G A NR1H3 Missense_Mutation p.E284K 0.16 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1W-06 11 47660554 47660554 C G MTCH2 Missense_Mutation p.R46P 0.16 deleterious(0) probably_damaging(0.931) TCGA-W3-AA1W-06 11 4903652 4903652 G A OR51T1 Missense_Mutation p.E202K 0.08 tolerated(0.05) probably_damaging(0.997) TCGA-W3-AA1W-06 11 4929145 4929145 G A OR51A7 Silent p.Q182Q 0.14 TCGA-W3-AA1W-06 11 4929154 4929154 G A OR51A7 Missense_Mutation p.M185I 0.13 tolerated(0.08) benign(0.158) TCGA-W3-AA1W-06 11 5080416 5080416 G A OR52E2 Missense_Mutation p.L148F 0.28 tolerated(0.17) benign(0.04) TCGA-W3-AA1W-06 11 5322391 5322391 C T OR51B4 Silent p.G262G 0.19 TCGA-W3-AA1W-06 11 55111321 55111321 C T OR4A16 Silent p.S215S 0.16 TCGA-W3-AA1W-06 11 55111417 55111417 C A OR4A16 Silent p.L247L 0.19 TCGA-W3-AA1W-06 11 55433107 55433107 G A OR4C6 Missense_Mutation p.M155I 0.23 tolerated_low_confidence(0.93) benign(0.004) TCGA-W3-AA1W-06 11 55872682 55872682 A T OR8H2 Missense_Mutation p.Q55L 0.12 deleterious(0) benign(0.02) TCGA-W3-AA1W-06 11 55890012 55890012 A T OR8H3 Missense_Mutation p.Q55L 0.06 deleterious(0) benign(0.053) TCGA-W3-AA1W-06 11 55927455 55927455 G A OR8K5 Silent p.F113F 0.15 TCGA-W3-AA1W-06 11 56020282 56020282 G A OR5T3 Missense_Mutation p.E203K 0.16 tolerated(0.32) benign(0.208) TCGA-W3-AA1W-06 11 56757303 56757303 G A OR5AK2 Silent p.G305G 0.23 TCGA-W3-AA1W-06 11 57118259 57118259 C T P2RX3 Silent p.I243I 0.11 TCGA-W3-AA1W-06 11 58478197 58478197 A G GLYAT Silent p.L118L 0.17 TCGA-W3-AA1W-06 11 5969068 5969068 C T OR56A3 Silent p.P164P 0.17 TCGA-W3-AA1W-06 11 59860941 59860941 C T MS4A2 Silent p.I149I 0.19 TCGA-W3-AA1W-06 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.15 tolerated(1) benign(0) TCGA-W3-AA1W-06 11 60470857 60470857 C T MS4A8 Nonsense_Mutation p.Q76* 0.23 TCGA-W3-AA1W-06 11 60785392 60785392 C T CD6 Missense_Mutation p.P582S 0.11 tolerated(0.07) benign(0.285) TCGA-W3-AA1W-06 11 61067574 61067574 G A DDB1 3'UTR 0.14 TCGA-W3-AA1W-06 11 61512059 61512059 C T DAGLA 3'UTR 0.21 TCGA-W3-AA1W-06 11 62291081 62291081 G A AHNAK Missense_Mutation p.P3603L 0.17 benign(0.095) TCGA-W3-AA1W-06 11 62294545 62294545 G A AHNAK Silent p.F2448F 0.19 TCGA-W3-AA1W-06 11 63277294 63277294 C T LGALS12 Silent p.L162L 0.26 TCGA-W3-AA1W-06 11 65421923 65421923 G A RELA Missense_Mutation p.L528F 0.17 tolerated_low_confidence(0.12) probably_damaging(0.913) TCGA-W3-AA1W-06 11 67050674 67050674 C T ADRBK1 Missense_Mutation p.R435W 0.11 deleterious(0) possibly_damaging(0.567) TCGA-W3-AA1W-06 11 68115557 68115557 G A LRP5 Missense_Mutation p.G112S 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 11 71184672 71184672 C T NADSYN1 Silent p.S202S 0.17 TCGA-W3-AA1W-06 11 7335002 7335002 C T SYT9 Missense_Mutation p.P292S 0.17 tolerated(0.37) benign(0.113) TCGA-W3-AA1W-06 11 78380619 78380619 C T TENM4 Silent p.E2257E 0.18 TCGA-W3-AA1W-06 11 86086067 86086067 C T CCDC81 5'UTR 0.19 TCGA-W3-AA1W-06 11 92577351 92577351 C T FAT3 Silent p.I3606I 0.17 TCGA-W3-AA1W-06 12 101488063 101488063 G A ANO4 Silent p.T542T 0.15 TCGA-W3-AA1W-06 12 101552103 101552103 C T SLC5A8 Missense_Mutation p.G545E 0.20 tolerated(0.11) probably_damaging(0.984) TCGA-W3-AA1W-06 12 108011991 108011991 C T BTBD11 Missense_Mutation p.S763F 0.18 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 12 10959083 10959083 C T TAS2R8 Missense_Mutation p.R166K 0.25 tolerated(0.7) possibly_damaging(0.526) TCGA-W3-AA1W-06 12 10959439 10959439 G A TAS2R8 Silent p.I47I 0.13 TCGA-W3-AA1W-06 12 110246157 110246157 C T TRPV4 Missense_Mutation p.G168E 0.20 deleterious(0.04) benign(0.098) TCGA-W3-AA1W-06 12 111352044 111352044 G A MYL2 Missense_Mutation p.P74S 0.13 tolerated(0.27) benign(0.019) TCGA-W3-AA1W-06 12 11546453 11546453 C T PRB2 Missense_Mutation p.G187R 0.15 tolerated(0.09) unknown(0) TCGA-W3-AA1W-06 12 117662880 117662880 G A NOS1 Missense_Mutation p.T1290I 0.14 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 12 121154712 121154712 C T UNC119B Silent p.F170F 0.18 TCGA-W3-AA1W-06 12 121154713 121154713 C T UNC119B Missense_Mutation p.R171W 0.18 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1W-06 12 123285756 123285756 G A CCDC62 Missense_Mutation p.D355N 0.14 deleterious(0) possibly_damaging(0.628) TCGA-W3-AA1W-06 12 124364290 124364290 G A DNAH10 Missense_Mutation p.G2741E 0.18 benign(0.002) TCGA-W3-AA1W-06 12 126128666 126128666 G A TMEM132B Missense_Mutation p.M489I 0.18 tolerated(0.17) benign(0.017) TCGA-W3-AA1W-06 12 13715685 13715685 C T GRIN2B 3'UTR 0.16 TCGA-W3-AA1W-06 12 13716953 13716953 G A GRIN2B Silent p.I1073I 0.18 TCGA-W3-AA1W-06 12 14656717 14656717 C T PLBD1 Missense_Mutation p.D551N 0.39 tolerated_low_confidence(0.29) benign(0.002) TCGA-W3-AA1W-06 12 1893103 1893103 C T ADIPOR2 Missense_Mutation p.S299L 0.22 tolerated(0.19) benign(0.001) TCGA-W3-AA1W-06 12 21028227 21028227 C T SLCO1B3 Silent p.F262F 0.15 TCGA-W3-AA1W-06 12 39947861 39947861 G A ABCD2 Silent p.I692I 0.11 TCGA-W3-AA1W-06 12 41966259 41966259 G A PDZRN4 Missense_Mutation p.E560K 0.14 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1W-06 12 43821168 43821168 C T ADAMTS20 Silent p.E1350E 0.08 TCGA-W3-AA1W-06 12 43837636 43837636 G A ADAMTS20 Missense_Mutation p.R750C 0.14 deleterious(0.04) possibly_damaging(0.663) TCGA-W3-AA1W-06 12 4479741 4479741 C T FGF23 Missense_Mutation p.R175Q 0.15 tolerated(0.1) possibly_damaging(0.734) TCGA-W3-AA1W-06 12 44915810 44915810 G A NELL2 Silent p.V766V 0.18 TCGA-W3-AA1W-06 12 44915937 44915937 C T NELL2 Missense_Mutation p.R724Q 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-W3-AA1W-06 12 45105149 45105149 G A NELL2 Missense_Mutation p.S422L 0.14 tolerated(0.29) benign(0.002) TCGA-W3-AA1W-06 12 46245989 46245989 C T ARID2 Silent p.I1361I 0.17 TCGA-W3-AA1W-06 12 53554022 53554022 C T CSAD Missense_Mutation p.G377R 0.13 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 12 55886320 55886320 G A OR6C68 Silent p.L53L 0.12 TCGA-W3-AA1W-06 12 58007215 58007215 C T ARHGEF25 Intron 0.19 TCGA-W3-AA1W-06 12 58165823 58165823 G A METTL1 Missense_Mutation p.P15L 0.14 tolerated(1) benign(0) TCGA-W3-AA1W-06 12 6085324 6085324 G A VWF Missense_Mutation p.R2464C 0.21 deleterious(0) probably_damaging(0.965) TCGA-W3-AA1W-06 12 6495229 6495229 C A LTBR Intron 0.25 TCGA-W3-AA1W-06 12 6979555 6979555 C T TPI1 3'UTR 0.11 TCGA-W3-AA1W-06 12 70938433 70938433 G A PTPRB Nonsense_Mutation p.R1800* 0.26 TCGA-W3-AA1W-06 12 71033026 71033026 C T PTPRR Missense_Mutation p.E638K 0.11 deleterious(0.02) benign(0.074) TCGA-W3-AA1W-06 12 7556293 7556293 C T CD163L1 Missense_Mutation p.V416I 0.25 tolerated(1) benign(0.044) TCGA-W3-AA1W-06 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.12 tolerated(0.06) possibly_damaging(0.542) TCGA-W3-AA1W-06 12 79611291 79611291 G A SYT1 5'UTR 0.18 TCGA-W3-AA1W-06 12 81205335 81205335 C T LIN7A Missense_Mutation p.R204Q 0.21 deleterious(0.02) benign(0.045) TCGA-W3-AA1W-06 12 85517969 85517969 G A LRRIQ1 Missense_Mutation p.E1227K 0.17 tolerated(0.23) possibly_damaging(0.73) TCGA-W3-AA1W-06 12 88568402 88568402 C T TMTC3 Silent p.S406S 0.13 TCGA-W3-AA1W-06 12 9000287 9000287 A G A2ML1 Missense_Mutation p.N609S 0.28 tolerated(0.68) benign(0.05) TCGA-W3-AA1W-06 12 9004564 9004564 C T A2ML1 Missense_Mutation p.R807C 0.34 tolerated(0.18) possibly_damaging(0.849) TCGA-W3-AA1W-06 12 9083498 9083498 G A PHC1 Silent p.A360A 0.27 TCGA-W3-AA1W-06 12 94975900 94975900 G A TMCC3 Missense_Mutation p.R165C 0.25 deleterious(0) benign(0.012) TCGA-W3-AA1W-06 12 97957688 97957688 C T MIR135A2 RNA 0.15 TCGA-W3-AA1W-06 13 103506195 103506195 C T BIVM-ERCC5 Missense_Mutation p.A544V 0.21 tolerated(0.39) probably_damaging(0.971) TCGA-W3-AA1W-06 13 110814640 110814640 G A COL4A1 Missense_Mutation p.L1467F 0.12 unknown(0) TCGA-W3-AA1W-06 13 110829038 110829038 C T COL4A1 Missense_Mutation p.R968Q 0.18 benign(0.09) TCGA-W3-AA1W-06 13 113798292 113798292 C T F10 Silent p.P210P 0.11 TCGA-W3-AA1W-06 13 113899308 113899308 G A CUL4A Missense_Mutation p.R460K 0.12 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 13 114325925 114325925 C T GRK1 Silent p.I313I 0.26 TCGA-W3-AA1W-06 13 25265111 25265111 C T ATP12A Missense_Mutation p.S270F 0.17 tolerated(0.07) benign(0) TCGA-W3-AA1W-06 13 28623673 28623673 C T FLT3 Missense_Mutation p.G295D 0.12 tolerated(0.65) benign(0.025) TCGA-W3-AA1W-06 13 28913332 28913332 C T FLT1 Missense_Mutation p.E821K 0.09 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 13 31495853 31495853 A G MEDAG Silent p.G219G 0.07 TCGA-W3-AA1W-06 13 33628169 33628169 G A KL Missense_Mutation p.G362E 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA1W-06 13 37269285 37269285 C T SERTM1 Missense_Mutation p.P24S 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-AA1W-06 13 39587710 39587710 G A PROSER1 Missense_Mutation p.P560L 0.12 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-W3-AA1W-06 13 43934148 43934148 G A ENOX1 Missense_Mutation p.T143I 0.27 deleterious(0) possibly_damaging(0.599) TCGA-W3-AA1W-06 13 46287432 46287432 C T SPERT Missense_Mutation p.P91L 0.19 deleterious_low_confidence(0.02) benign(0.22) TCGA-W3-AA1W-06 13 70371056 70371056 G A KLHL1 Silent p.L485L 0.18 TCGA-W3-AA1W-06 13 95858960 95858960 T G ABCC4 Missense_Mutation p.K329N 0.17 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1W-06 13 99582424 99582424 C T DOCK9 Missense_Mutation p.E111K 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1W-06 14 102676068 102676068 C T WDR20 Missense_Mutation p.P552S 0.22 deleterious(0) possibly_damaging(0.758) TCGA-W3-AA1W-06 14 104124113 104124113 C T KLC1 Silent p.S164S 0.38 TCGA-W3-AA1W-06 14 106815762 106815762 C T IGHV3-33 Missense_Mutation p.S104N 0.36 tolerated_low_confidence(0.11) benign(0.026) TCGA-W3-AA1W-06 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.14 deleterious(0.01) possibly_damaging(0.461) TCGA-W3-AA1W-06 14 20019959 20019959 C T POTEM Missense_Mutation p.D88N 0.04 tolerated_low_confidence(0.17) probably_damaging(0.972) TCGA-W3-AA1W-06 14 20215629 20215629 C T OR4Q3 Silent p.L15L 0.18 TCGA-W3-AA1W-06 14 20296339 20296339 C T OR4N2 Silent p.I244I 0.16 TCGA-W3-AA1W-06 14 21829340 21829340 C T SUPT16H Missense_Mutation p.G609E 0.14 deleterious(0) probably_damaging(0.994) TCGA-W3-AA1W-06 14 22111706 22111706 C T TRAV1-2 Missense_Mutation p.R76C 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-W3-AA1W-06 14 22133574 22133574 C T OR4E2 Missense_Mutation p.S93F 0.18 deleterious(0.01) benign(0.049) TCGA-W3-AA1W-06 14 22362696 22362696 C T TRAV8-4 5'UTR 0.20 TCGA-W3-AA1W-06 14 23312971 23312971 C T MMP14 Silent p.S301S 0.16 TCGA-W3-AA1W-06 14 23884477 23884477 G A MYH7 Silent p.A1762A 0.18 TCGA-W3-AA1W-06 14 24435159 24435159 C T DHRS4 Silent p.I166I 0.19 TCGA-W3-AA1W-06 14 24618687 24618687 C T RNF31 Missense_Mutation p.A235V 0.12 tolerated(0.68) benign(0.001) TCGA-W3-AA1W-06 14 24807086 24807086 G T RIPK3 Silent p.S275S 0.10 TCGA-W3-AA1W-06 14 24845959 24845959 G A NFATC4 Missense_Mutation p.G902E 0.16 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-W3-AA1W-06 14 31139516 31139516 C T SCFD1 Missense_Mutation p.P304S 0.16 tolerated(0.16) benign(0.016) TCGA-W3-AA1W-06 14 42360654 42360654 G A LRFN5 Missense_Mutation p.M529I 0.15 tolerated(0.12) benign(0.085) TCGA-W3-AA1W-06 14 59112495 59112495 C T DACT1 Missense_Mutation p.S385L 0.17 tolerated(0.19) benign(0.013) TCGA-W3-AA1W-06 14 67940036 67940036 G A TMEM229B 3'UTR 0.19 TCGA-W3-AA1W-06 14 67940037 67940037 G A TMEM229B 3'UTR 0.18 TCGA-W3-AA1W-06 14 72190477 72190477 C T SIPA1L1 Missense_Mutation p.S1462F 0.15 deleterious(0) probably_damaging(0.982) TCGA-W3-AA1W-06 14 75562119 75562119 G A NEK9 Missense_Mutation p.S730F 0.14 deleterious(0) probably_damaging(0.979) TCGA-W3-AA1W-06 14 76446913 76446913 G A TGFB3 Silent p.F108F 0.11 TCGA-W3-AA1W-06 14 79181297 79181297 G A NRXN3 Missense_Mutation p.S247N 0.10 deleterious(0.01) possibly_damaging(0.871) TCGA-W3-AA1W-06 14 81046743 81046743 T G CEP128 Missense_Mutation p.K944T 0.14 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1W-06 14 91779532 91779532 C T CCDC88C Silent p.L876L 0.16 TCGA-W3-AA1W-06 14 92436184 92436184 G A TRIP11 Missense_Mutation p.P1925S 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-W3-AA1W-06 14 93303761 93303761 C T GOLGA5 Silent p.Y694Y 0.15 TCGA-W3-AA1W-06 14 95670485 95670485 G A CLMN Missense_Mutation p.P401S 0.20 tolerated(0.27) benign(0.021) TCGA-W3-AA1W-06 14 96707106 96707106 C T BDKRB2 Silent p.F147F 0.20 TCGA-W3-AA1W-06 14 96731048 96731048 G A BDKRB1 Silent p.R343R 0.21 TCGA-W3-AA1W-06 15 102358667 102358667 C T OR4F15 Missense_Mutation p.S93F 0.13 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-W3-AA1W-06 15 25330430 25330430 G A SNORD116-18 5'Flank 0.16 TCGA-W3-AA1W-06 15 25330548 25330548 C T SNORD116-18 RNA 0.08 TCGA-W3-AA1W-06 15 25330549 25330549 C T SNORD116-18 RNA 0.09 TCGA-W3-AA1W-06 15 28211909 28211909 C T OCA2 Silent p.L521L 0.11 TCGA-W3-AA1W-06 15 35082673 35082673 C T ACTC1 Nonsense_Mutation p.W358* 0.18 TCGA-W3-AA1W-06 15 40558226 40558226 C T PAK6 Missense_Mutation p.L130F 0.25 tolerated(0.55) benign(0.003) TCGA-W3-AA1W-06 15 41372026 41372026 C G INO80 Missense_Mutation p.R335P 0.20 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1W-06 15 42110448 42110448 C T MAPKBP1 Silent p.L685L 0.14 TCGA-W3-AA1W-06 15 43748789 43748789 G A TP53BP1 Missense_Mutation p.P673S 0.17 deleterious(0.01) probably_damaging(1) TCGA-W3-AA1W-06 15 43891430 43891430 G A CKMT1B Missense_Mutation p.D405N 0.11 tolerated(0.23) benign(0.001) TCGA-W3-AA1W-06 15 43990308 43990308 C T CKMT1A Missense_Mutation p.R325W 0.18 deleterious(0.01) possibly_damaging(0.746) TCGA-W3-AA1W-06 15 45709587 45709587 C T SPATA5L1 Missense_Mutation p.P653L 0.17 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 15 50518269 50518269 C T SLC27A2 Missense_Mutation p.P418S 0.20 tolerated(0.18) benign(0.082) TCGA-W3-AA1W-06 15 52442012 52442012 G A GNB5 Intron 0.17 TCGA-W3-AA1W-06 15 65235778 65235778 G A ANKDD1A Silent p.K355K 0.17 TCGA-W3-AA1W-06 15 66729162 66729162 C T MAP2K1 Missense_Mutation p.P124S 0.17 tolerated(0.08) probably_damaging(0.913) TCGA-W3-AA1W-06 15 69548698 69548698 C G GLCE Missense_Mutation p.R185G 0.16 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 15 69714755 69714755 C T KIF23 Missense_Mutation p.P182S 0.18 tolerated(0.11) benign(0.039) TCGA-W3-AA1W-06 15 70976612 70976612 G A UACA Missense_Mutation p.T259I 0.12 tolerated(0.2) benign(0.157) TCGA-W3-AA1W-06 15 73617684 73617684 G A HCN4 Silent p.F564F 0.16 TCGA-W3-AA1W-06 15 75975321 75975321 G A CSPG4 Missense_Mutation p.S1504F 0.12 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1W-06 15 76646456 76646456 G A SCAPER Missense_Mutation p.P1294L 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 15 78882501 78882501 C T CHRNA5 Silent p.F256F 0.22 TCGA-W3-AA1W-06 15 81630993 81630993 C T TMC3 Intron 0.13 TCGA-W3-AA1W-06 15 84639315 84639315 C T ADAMTSL3 Missense_Mutation p.P857L 0.10 tolerated(0.32) benign(0.005) TCGA-W3-AA1W-06 15 85327400 85327400 C T ZNF592 Silent p.L498L 0.28 TCGA-W3-AA1W-06 15 92981636 92981636 G A ST8SIA2 Missense_Mutation p.G115E 0.19 possibly_damaging(0.777) TCGA-W3-AA1W-06 16 12059066 12059066 C T TNFRSF17 5'UTR 0.19 TCGA-W3-AA1W-06 16 14334521 14334521 C T MKL2 Intron 0.18 TCGA-W3-AA1W-06 16 15844121 15844121 C T MYH11 Silent p.K651K 0.13 TCGA-W3-AA1W-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.19 tolerated(0.08) benign(0.009) TCGA-W3-AA1W-06 16 19725604 19725604 C T KNOP1 Missense_Mutation p.A252T 0.17 deleterious(0.02) benign(0.045) TCGA-W3-AA1W-06 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1W-06 16 20638604 20638604 C T ACSM1 Missense_Mutation p.G445E 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA1W-06 16 20696703 20696703 G A ACSM1 Missense_Mutation p.P72L 0.11 tolerated(0.12) possibly_damaging(0.887) TCGA-W3-AA1W-06 16 21726326 21726326 C T OTOA Silent p.V447V 0.18 TCGA-W3-AA1W-06 16 23226847 23226847 G A SCNN1G 3'UTR 0.28 TCGA-W3-AA1W-06 16 24583092 24583092 C T RBBP6 Missense_Mutation p.R1569C 0.10 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA1W-06 16 2474726 2474726 G A CCNF 5'Flank 0.36 TCGA-W3-AA1W-06 16 24873951 24873951 G A SLC5A11 Silent p.V55V 0.14 TCGA-W3-AA1W-06 16 27460350 27460350 G A IL21R Missense_Mutation p.D455N 0.25 tolerated(0.06) possibly_damaging(0.549) TCGA-W3-AA1W-06 16 28604659 28604659 C T SULT1A2 Missense_Mutation p.G170R 0.11 deleterious(0.02) possibly_damaging(0.856) TCGA-W3-AA1W-06 16 2882082 2882082 G A ZG16B Nonsense_Mutation p.W183* 0.12 TCGA-W3-AA1W-06 16 31072608 31072608 G A ZNF668 Silent p.T570T 0.22 TCGA-W3-AA1W-06 16 31151877 31151877 G A PRSS36 Silent p.H701H 0.35 TCGA-W3-AA1W-06 16 3115694 3115694 G A IL32 Intron 0.19 TCGA-W3-AA1W-06 16 48210979 48210979 G A ABCC11 Missense_Mutation p.P1132S 0.20 tolerated(0.07) possibly_damaging(0.601) TCGA-W3-AA1W-06 16 50746147 50746147 C T NOD2 Silent p.G775G 0.08 TCGA-W3-AA1W-06 16 53476726 53476726 C T RBL2 Silent p.Y176Y 0.08 TCGA-W3-AA1W-06 16 55846881 55846881 C T CES1 Silent p.R340R 0.23 TCGA-W3-AA1W-06 16 56933474 56933474 G A SLC12A3 Missense_Mutation p.G898E 0.11 tolerated(0.39) benign(0.12) TCGA-W3-AA1W-06 16 57507334 57507334 C T DOK4 Silent p.K312K 0.10 TCGA-W3-AA1W-06 16 57738800 57738800 G A CCDC135 Missense_Mutation p.E238K 0.15 tolerated(0.33) benign(0.012) TCGA-W3-AA1W-06 16 58031774 58031774 G A ZNF319 Silent p.F132F 0.22 TCGA-W3-AA1W-06 16 58318560 58318560 G A PRSS54 Silent p.P196P 0.17 TCGA-W3-AA1W-06 16 58610411 58610411 G A CNOT1 Nonsense_Mutation p.Q554* 0.12 TCGA-W3-AA1W-06 16 58619389 58619389 G A CNOT1 Missense_Mutation p.P220L 0.12 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 16 61687550 61687550 C T CDH8 Missense_Mutation p.E788K 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-W3-AA1W-06 16 69333550 69333550 C T SNTB2 Missense_Mutation p.T468I 0.17 deleterious(0) possibly_damaging(0.521) TCGA-W3-AA1W-06 16 70975666 70975666 C T HYDIN Silent p.Q2242Q 0.14 TCGA-W3-AA1W-06 16 71015355 71015355 G A HYDIN Silent p.I1483I 0.18 TCGA-W3-AA1W-06 16 77353847 77353847 C T ADAMTS18 Missense_Mutation p.E811K 0.13 tolerated(0.71) benign(0.008) TCGA-W3-AA1W-06 16 77401474 77401474 G A ADAMTS18 Silent p.Y214Y 0.10 TCGA-W3-AA1W-06 16 81641200 81641200 C T CMIP Missense_Mutation p.S110F 0.16 tolerated(0.11) benign(0.11) TCGA-W3-AA1W-06 16 85111219 85111219 C T KIAA0513 Missense_Mutation p.P255S 0.25 tolerated(0.38) benign(0.222) TCGA-W3-AA1W-06 16 88643606 88643606 C T ZC3H18 Silent p.D25D 0.09 TCGA-W3-AA1W-06 16 89352531 89352533 GCG CA ANKRD11 Frame_Shift_Del p.T269Mfs*3 0.17 TCGA-W3-AA1W-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.12 tolerated(0.37) benign(0.005) TCGA-W3-AA1W-06 16 9858006 9858006 G A GRIN2A Missense_Mutation p.P1132L 0.23 deleterious(0.01) possibly_damaging(0.486) TCGA-W3-AA1W-06 16 9858731 9858731 G A GRIN2A Silent p.S890S 0.14 TCGA-W3-AA1W-06 16 9858732 9858732 G T GRIN2A Missense_Mutation p.S890Y 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-W3-AA1W-06 17 10366710 10366710 G A MYH4 Silent p.F250F 0.16 TCGA-W3-AA1W-06 17 10399635 10399635 C T MYH1 Missense_Mutation p.E1630K 0.15 deleterious(0.02) possibly_damaging(0.887) TCGA-W3-AA1W-06 17 10430317 10430317 C T MYH2 Missense_Mutation p.G1310S 0.27 tolerated(0.35) benign(0.032) TCGA-W3-AA1W-06 17 10440997 10440997 G A MYH2 Silent p.I524I 0.14 TCGA-W3-AA1W-06 17 12666537 12666537 C T MYOCD Missense_Mutation p.P846L 0.14 deleterious(0) benign(0.085) TCGA-W3-AA1W-06 17 1411506 1411506 A T INPP5K Missense_Mutation p.F190Y 0.16 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1W-06 17 1538769 1538769 G A SCARF1 Silent p.F592F 0.15 TCGA-W3-AA1W-06 17 16335281 16335281 C T TRPV2 Silent p.A552A 0.21 TCGA-W3-AA1W-06 17 17697868 17697868 C T RAI1 Missense_Mutation p.R536C 0.14 deleterious(0) benign(0.014) TCGA-W3-AA1W-06 17 18047232 18047232 G A MYO15A Missense_Mutation p.R2032Q 0.17 unknown(0) TCGA-W3-AA1W-06 17 21731245 21731245 C T UBBP4 Intron 0.12 TCGA-W3-AA1W-06 17 28011605 28011605 C A SSH2 Missense_Mutation p.G125V 0.11 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 17 28011606 28011606 C T SSH2 Missense_Mutation p.G125R 0.11 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 17 3119713 3119713 C T OR1A1 Silent p.L267L 0.12 TCGA-W3-AA1W-06 17 3195585 3195585 C T OR3A1 Missense_Mutation p.G98R 0.17 tolerated(0.58) benign(0.002) TCGA-W3-AA1W-06 17 33806525 33806525 C T SLFN12L Missense_Mutation p.R235Q 0.12 tolerated(0.48) probably_damaging(0.996) TCGA-W3-AA1W-06 17 3655161 3655161 G A ITGAE Missense_Mutation p.S559F 0.16 deleterious(0.04) probably_damaging(0.935) TCGA-W3-AA1W-06 17 37922508 37922508 G A IKZF3 Silent p.A355A 0.20 TCGA-W3-AA1W-06 17 40838127 40838127 G A CNTNAP1 Missense_Mutation p.G290R 0.14 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 17 40850689 40850689 C T CNTNAP1 Silent p.L1306L 0.14 TCGA-W3-AA1W-06 17 41165122 41165122 C T IFI35 Missense_Mutation p.P60L 0.17 deleterious(0.03) benign(0) TCGA-W3-AA1W-06 17 41167933 41167933 G A VAT1 3'UTR 0.22 TCGA-W3-AA1W-06 17 41926175 41926175 C T CD300LG Missense_Mutation p.T98I 0.22 deleterious(0) probably_damaging(0.991) TCGA-W3-AA1W-06 17 42169751 42169751 C A HDAC5 Missense_Mutation p.G307V 0.12 tolerated(0.24) benign(0.439) TCGA-W3-AA1W-06 17 42169752 42169752 C T HDAC5 Missense_Mutation p.G307R 0.11 tolerated(0.43) possibly_damaging(0.839) TCGA-W3-AA1W-06 17 42249583 42249583 C T ASB16 Silent p.D157D 0.17 TCGA-W3-AA1W-06 17 42430195 42430195 C T GRN 3'UTR 0.20 TCGA-W3-AA1W-06 17 44061080 44061080 C T MAPT Missense_Mutation p.H304Y 0.10 deleterious(0.02) possibly_damaging(0.635) TCGA-W3-AA1W-06 17 45249339 45249339 A G CDC27 Silent p.S65S 0.08 TCGA-W3-AA1W-06 17 45361901 45361901 G A ITGB3 Missense_Mutation p.D152N 0.17 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1W-06 17 4689209 4689209 G A VMO1 Intron 0.15 TCGA-W3-AA1W-06 17 5050420 5050420 G A USP6 Missense_Mutation p.G788R 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.819) TCGA-W3-AA1W-06 17 51900716 51900716 G A KIF2B Missense_Mutation p.D108N 0.32 tolerated(0.49) probably_damaging(0.998) TCGA-W3-AA1W-06 17 56247145 56247145 C T OR4D2 Silent p.I43I 0.31 TCGA-W3-AA1W-06 17 59668028 59668028 C T NACA2 Missense_Mutation p.D172N 0.32 deleterious(0.03) benign(0.001) TCGA-W3-AA1W-06 17 60493483 60493483 C T EFCAB3 Silent p.S422S 0.27 TCGA-W3-AA1W-06 17 62892256 62892256 C T LRRC37A3 Missense_Mutation p.E374K 0.23 deleterious(0.01) possibly_damaging(0.565) TCGA-W3-AA1W-06 17 63010533 63010533 G A GNA13 Silent p.L326L 0.25 TCGA-W3-AA1W-06 17 63221251 63221251 C T RGS9 Silent p.F513F 0.25 TCGA-W3-AA1W-06 17 63221507 63221507 C T RGS9 Missense_Mutation p.L599F 0.13 deleterious_low_confidence(0.01) benign(0.085) TCGA-W3-AA1W-06 17 6903690 6903690 G A ALOX12 Silent p.L281L 0.14 TCGA-W3-AA1W-06 17 7012175 7012175 G A ASGR2 Missense_Mutation p.L53F 0.42 tolerated(0.12) possibly_damaging(0.46) TCGA-W3-AA1W-06 17 73726973 73726973 C T ITGB4 Silent p.F340F 0.31 TCGA-W3-AA1W-06 17 73780747 73780747 G A UNK 5'Flank 0.26 TCGA-W3-AA1W-06 17 76563088 76563088 C T DNAH17 Missense_Mutation p.G482E 0.21 benign(0.002) TCGA-W3-AA1W-06 17 78078600 78078600 C T GAA Missense_Mutation p.P72L 0.24 tolerated(0.73) benign(0.002) TCGA-W3-AA1W-06 17 8701944 8701944 G A MFSD6L Silent p.F165F 0.13 TCGA-W3-AA1W-06 18 28610939 28610939 C T DSC3 Silent p.K118K 0.33 TCGA-W3-AA1W-06 18 28968386 28968386 G A DSG4 Silent p.G91G 0.34 TCGA-W3-AA1W-06 18 31323893 31323893 C T ASXL3 Missense_Mutation p.P1361S 0.42 benign(0.018) TCGA-W3-AA1W-06 18 31709891 31709891 C T NOL4 Missense_Mutation p.G120R 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 18 47405447 47405447 C T MYO5B Silent p.Q1048Q 0.36 TCGA-W3-AA1W-06 18 47917578 47917578 C T SKA1 Silent p.I178I 0.40 TCGA-W3-AA1W-06 18 52556538 52556538 G A RAB27B Missense_Mutation p.R184Q 0.30 deleterious(0.03) benign(0.083) TCGA-W3-AA1W-06 18 56204762 56204762 A C ALPK2 Missense_Mutation p.M886R 0.28 tolerated(0.5) benign(0.052) TCGA-W3-AA1W-06 18 61471517 61471517 C T SERPINB7 Missense_Mutation p.P264L 0.24 tolerated(0.34) probably_damaging(0.961) TCGA-W3-AA1W-06 18 61564346 61564346 C T SERPINB2 Missense_Mutation p.H104Y 0.40 deleterious(0.03) possibly_damaging(0.791) TCGA-W3-AA1W-06 18 7009253 7009253 C T LAMA1 Missense_Mutation p.G1329E 0.28 tolerated(0.27) possibly_damaging(0.612) TCGA-W3-AA1W-06 18 72228112 72228112 C T CNDP1 Missense_Mutation p.P109S 0.34 tolerated(0.09) benign(0.006) TCGA-W3-AA1W-06 18 76754470 76754470 G A SALL3 Missense_Mutation p.G827R 0.29 tolerated(0.22) possibly_damaging(0.615) TCGA-W3-AA1W-06 18 76754779 76754779 G A SALL3 Missense_Mutation p.E930K 0.38 tolerated(0.24) benign(0.277) TCGA-W3-AA1W-06 19 10334751 10334751 G A S1PR2 Silent p.S277S 0.11 TCGA-W3-AA1W-06 19 10468563 10468563 G A TYK2 Silent p.P781P 0.18 TCGA-W3-AA1W-06 19 11513210 11513210 G T RGL3 Missense_Mutation p.P417H 0.16 deleterious(0.01) probably_damaging(0.944) TCGA-W3-AA1W-06 19 11513211 11513211 G A RGL3 Missense_Mutation p.P417S 0.16 tolerated(0.14) benign(0.126) TCGA-W3-AA1W-06 19 13928043 13928043 G A ZSWIM4 Silent p.K398K 0.13 TCGA-W3-AA1W-06 19 15132664 15132664 G A CCDC105 Missense_Mutation p.R395K 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA1W-06 19 16025589 16025589 C T CYP4F11 Missense_Mutation p.G411D 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-W3-AA1W-06 19 17000970 17000970 G C F2RL3 Silent p.L232L 0.30 TCGA-W3-AA1W-06 19 17343103 17343103 C G NR2F6 3'UTR 0.21 TCGA-W3-AA1W-06 19 19168284 19168284 C T ARMC6 Silent p.P451P 0.25 TCGA-W3-AA1W-06 19 20188908 20188908 G A ZNF90 5'UTR 0.18 TCGA-W3-AA1W-06 19 21720165 21720165 C T ZNF429 Missense_Mutation p.S437F 0.21 tolerated(0.57) benign(0.01) TCGA-W3-AA1W-06 19 23170148 23170148 C A ZNF728 Missense_Mutation p.W63L 0.14 tolerated(0.14) probably_damaging(0.998) TCGA-W3-AA1W-06 19 23415048 23415048 C G ZNF724P Missense_Mutation p.E17D 0.14 deleterious(0) possibly_damaging(0.874) TCGA-W3-AA1W-06 19 2733406 2733406 G A SLC39A3 Silent p.F96F 0.14 TCGA-W3-AA1W-06 19 2877695 2877695 C T ZNF556 Missense_Mutation p.R247C 0.20 deleterious(0.02) probably_damaging(0.962) TCGA-W3-AA1W-06 19 31039433 31039433 G A ZNF536 Silent p.E969E 0.18 TCGA-W3-AA1W-06 19 34890945 34890945 C T GPI 3'UTR 0.11 TCGA-W3-AA1W-06 19 35862317 35862317 C T GPR42 Missense_Mutation p.S19L 0.07 deleterious(0.02) benign(0.039) TCGA-W3-AA1W-06 19 36349665 36349665 C T KIRREL2 Missense_Mutation p.P141S 0.21 tolerated(0.12) probably_damaging(0.942) TCGA-W3-AA1W-06 19 3731984 3731984 C T TJP3 Missense_Mutation p.S231L 0.19 deleterious(0) possibly_damaging(0.586) TCGA-W3-AA1W-06 19 37879205 37879205 C T ZNF527 Intron 0.19 TCGA-W3-AA1W-06 19 38610370 38610370 G A SIPA1L3 Missense_Mutation p.E906K 0.18 tolerated(0.2) benign(0.206) TCGA-W3-AA1W-06 19 39078140 39078140 C T RYR1 3'Flank 0.21 TCGA-W3-AA1W-06 19 39078345 39078345 G A MAP4K1 3'UTR 0.18 TCGA-W3-AA1W-06 19 40325419 40325419 G A FBL Missense_Mutation p.A277V 0.09 tolerated(0.34) benign(0.014) TCGA-W3-AA1W-06 19 40884017 40884017 C T PLD3 Silent p.S470S 0.12 TCGA-W3-AA1W-06 19 41239257 41239257 C T ITPKC Silent p.I554I 0.35 TCGA-W3-AA1W-06 19 4171105 4171105 T C CREB3L3 Missense_Mutation p.L303P 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1W-06 19 42471468 42471468 G A ATP1A3 Silent p.F995F 0.12 TCGA-W3-AA1W-06 19 42796457 42796457 C T CIC Missense_Mutation p.T1005I 0.13 probably_damaging(0.969) TCGA-W3-AA1W-06 19 43258394 43258394 C T PSG8 3'UTR 0.18 TCGA-W3-AA1W-06 19 43519514 43519514 C T PSG11 Missense_Mutation p.D240N 0.21 deleterious(0.01) benign(0.172) TCGA-W3-AA1W-06 19 43528980 43528980 C T PSG11 Missense_Mutation p.R98Q 0.14 deleterious(0.03) probably_damaging(1) TCGA-W3-AA1W-06 19 43586683 43586683 G A PSG2 Silent p.I13I 0.14 TCGA-W3-AA1W-06 19 4418031 4418031 C T CHAF1A Silent p.F325F 0.22 TCGA-W3-AA1W-06 19 44679094 44679094 C T ZNF226 Intron 0.10 TCGA-W3-AA1W-06 19 45157230 45157230 C T PVR Silent p.A262A 0.14 TCGA-W3-AA1W-06 19 46299159 46299159 C T RSPH6A Missense_Mutation p.E708K 0.11 tolerated_low_confidence(0.1) benign(0.292) TCGA-W3-AA1W-06 19 46307939 46307939 C T RSPH6A Nonsense_Mutation p.W408* 0.12 TCGA-W3-AA1W-06 19 49341337 49341337 G A PLEKHA4 Missense_Mutation p.R672W 0.26 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-W3-AA1W-06 19 49657516 49657516 C T HRC Missense_Mutation p.E327K 0.26 tolerated(0.09) possibly_damaging(0.517) TCGA-W3-AA1W-06 19 49674976 49674976 C T TRPM4 Nonsense_Mutation p.R334* 0.21 TCGA-W3-AA1W-06 19 49979049 49979049 C T FLT3LG Silent p.I45I 0.26 TCGA-W3-AA1W-06 19 50360339 50360339 G A PTOV1 Silent p.Q222Q 0.15 TCGA-W3-AA1W-06 19 50824039 50824039 G A KCNC3 Missense_Mutation p.P661S 0.14 tolerated_low_confidence(0.86) possibly_damaging(0.641) TCGA-W3-AA1W-06 19 51215314 51215314 G A SHANK1 Silent p.L284L 0.19 TCGA-W3-AA1W-06 19 51330167 51330167 C T KLK15 Missense_Mutation p.E150K 0.17 tolerated(1) benign(0.003) TCGA-W3-AA1W-06 19 51359506 51359506 C T KLK3 Silent p.P19P 0.09 TCGA-W3-AA1W-06 19 51503514 51503514 C T KLK8 Silent p.P122P 0.19 TCGA-W3-AA1W-06 19 51738456 51738456 G A CD33 Missense_Mutation p.G264R 0.11 deleterious(0.03) probably_damaging(0.989) TCGA-W3-AA1W-06 19 51918848 51918848 A C SIGLEC10 Missense_Mutation p.V349G 0.11 deleterious(0) probably_damaging(0.963) TCGA-W3-AA1W-06 19 52447948 52447948 G A ZNF613 Nonsense_Mutation p.W271* 0.21 TCGA-W3-AA1W-06 19 52447949 52447949 G A ZNF613 Nonsense_Mutation p.W271* 0.21 TCGA-W3-AA1W-06 19 52448381 52448381 C T ZNF613 Silent p.L415L 0.17 TCGA-W3-AA1W-06 19 53669362 53669362 A G ZNF665 Silent p.R127R 0.16 TCGA-W3-AA1W-06 19 53793106 53793106 G A BIRC8 Silent p.I174I 0.21 TCGA-W3-AA1W-06 19 54783331 54783331 G A LILRB2 Missense_Mutation p.S176L 0.15 tolerated(0.07) benign(0.016) TCGA-W3-AA1W-06 19 55294981 55294981 G A KIR2DL1 Silent p.A287A 0.18 TCGA-W3-AA1W-06 19 56373451 56373451 G A NLRP4 Silent p.T704T 0.13 TCGA-W3-AA1W-06 19 56515180 56515180 G A NLRP5 Missense_Mutation p.G54E 0.28 tolerated(1) benign(0) TCGA-W3-AA1W-06 19 56515292 56515292 G A NLRP5 Silent p.S91S 0.28 TCGA-W3-AA1W-06 19 56953055 56953055 G A ZNF667 Missense_Mutation p.H437Y 0.14 deleterious(0) probably_damaging(0.984) TCGA-W3-AA1W-06 19 5711852 5711852 G A LONP1 Missense_Mutation p.P267L 0.16 tolerated(0.14) benign(0.003) TCGA-W3-AA1W-06 19 57646951 57646951 G A ZIM3 Nonsense_Mutation p.Q252* 0.13 TCGA-W3-AA1W-06 19 58199007 58199007 C T ZNF551 Missense_Mutation p.S455F 0.15 tolerated(0.36) benign(0.014) TCGA-W3-AA1W-06 19 7589875 7589875 C T MCOLN1 Silent p.P20P 0.15 TCGA-W3-AA1W-06 19 7709604 7709604 C T STXBP2 Silent p.I404I 0.15 TCGA-W3-AA1W-06 19 7709605 7709605 C T STXBP2 Missense_Mutation p.R405W 0.14 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 19 7830624 7830624 G A CLEC4M Silent p.E105E 0.11 TCGA-W3-AA1W-06 19 8188667 8188667 C T FBN3 Splice_Site p.X986_splice 0.21 TCGA-W3-AA1W-06 19 8842081 8842081 G A OR2Z1 Missense_Mutation p.E231K 0.15 tolerated(0.22) benign(0.01) TCGA-W3-AA1W-06 19 8993514 8993514 C T MUC16 Missense_Mutation p.D13859N 0.17 probably_damaging(0.995) TCGA-W3-AA1W-06 19 9058825 9058825 C T MUC16 Missense_Mutation p.E9541K 0.10 unknown(0) TCGA-W3-AA1W-06 19 9059217 9059217 G A MUC16 Missense_Mutation p.T9410I 0.14 unknown(0) TCGA-W3-AA1W-06 19 9061013 9061013 G A MUC16 Silent p.S8811S 0.19 TCGA-W3-AA1W-06 19 9065118 9065118 G A MUC16 Missense_Mutation p.P7443L 0.12 unknown(0) TCGA-W3-AA1W-06 19 9065294 9065294 G A MUC16 Silent p.L7384L 0.14 TCGA-W3-AA1W-06 19 9073995 9073995 G A MUC16 Missense_Mutation p.S4484L 0.20 unknown(0) TCGA-W3-AA1W-06 19 9076977 9076977 G A MUC16 Missense_Mutation p.S3490F 0.15 unknown(0) TCGA-W3-AA1W-06 19 9085995 9085995 G A MUC16 Silent p.S1940S 0.20 TCGA-W3-AA1W-06 19 9226385 9226385 C T OR7G1 Missense_Mutation p.E19K 0.14 deleterious(0.03) benign(0.012) TCGA-W3-AA1W-06 19 9297372 9297372 C T OR7D2 Silent p.L305L 0.21 TCGA-W3-AA1W-06 19 9583891 9583891 C T ZNF560 Missense_Mutation p.E68K 0.19 tolerated_low_confidence(0.12) possibly_damaging(0.636) TCGA-W3-AA1W-06 1 103444269 103444269 C T COL11A1 Missense_Mutation p.E917K 0.18 unknown(0) TCGA-W3-AA1W-06 1 103471394 103471394 C T COL11A1 Silent p.R615R 0.18 TCGA-W3-AA1W-06 1 118484422 118484422 T A WDR3 Missense_Mutation p.I314N 0.15 tolerated(0.06) possibly_damaging(0.702) TCGA-W3-AA1W-06 1 11894407 11894407 C T CLCN6 Silent p.S547S 0.10 TCGA-W3-AA1W-06 1 1191439 1191439 G A UBE2J2 Missense_Mutation p.P177S 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-W3-AA1W-06 1 119428038 119428038 G A TBX15 Missense_Mutation p.H270Y 0.16 tolerated(0.08) probably_damaging(0.968) TCGA-W3-AA1W-06 1 144892577 144892577 C T PDE4DIP Missense_Mutation p.G943E 0.19 tolerated(0.16) probably_damaging(0.927) TCGA-W3-AA1W-06 1 151214646 151214646 C T PIP5K1A Missense_Mutation p.R471W 0.11 tolerated(0.07) possibly_damaging(0.762) TCGA-W3-AA1W-06 1 152127570 152127570 C T RPTN Missense_Mutation p.E669K 0.35 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 1 152275900 152275900 T A FLG Missense_Mutation p.D3821V 0.14 unknown(0) TCGA-W3-AA1W-06 1 152329357 152329357 C T FLG2 Missense_Mutation p.R302K 0.10 unknown(0) TCGA-W3-AA1W-06 1 152331258 152331258 C T FLG2 Missense_Mutation p.E35K 0.32 unknown(0) TCGA-W3-AA1W-06 1 153614905 153614905 G A CHTOP Missense_Mutation p.G135S 0.37 deleterious(0.04) unknown(0) TCGA-W3-AA1W-06 1 153740225 153740225 C T INTS3 Silent p.C722C 0.22 TCGA-W3-AA1W-06 1 153740226 153740226 C T INTS3 Silent p.L723L 0.22 TCGA-W3-AA1W-06 1 154680504 154680504 C A KCNN3 Missense_Mutation p.G715V 0.31 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-W3-AA1W-06 1 155154537 155154537 C T TRIM46 Missense_Mutation p.P600S 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-W3-AA1W-06 1 155912373 155912373 C T RXFP4 Silent p.F291F 0.26 TCGA-W3-AA1W-06 1 156108284 156108284 C T LMNA Silent p.S568S 0.29 TCGA-W3-AA1W-06 1 156146589 156146589 C T SEMA4A Missense_Mutation p.S696L 0.24 tolerated(0.46) benign(0.002) TCGA-W3-AA1W-06 1 157490975 157490975 G A FCRL5 Silent p.L783L 0.12 TCGA-W3-AA1W-06 1 157665275 157665275 G A FCRL3 Missense_Mutation p.H419Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1W-06 1 158368903 158368903 C T OR10T2 Silent p.V118V 0.12 TCGA-W3-AA1W-06 1 158548760 158548760 C T OR10X1 Missense_Mutation p.M310I 0.30 deleterious(0.05) benign(0.008) TCGA-W3-AA1W-06 1 158617496 158617496 C T SPTA1 Silent p.G1243G 0.15 TCGA-W3-AA1W-06 1 159409825 159409825 C T OR10J1 Missense_Mutation p.L93F 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 1 159897969 159897969 T G IGSF9 Missense_Mutation p.H1070P 0.25 tolerated(0.24) benign(0.391) TCGA-W3-AA1W-06 1 160106481 160106481 G A ATP1A2 Silent p.L895L 0.30 TCGA-W3-AA1W-06 1 160523648 160523648 C T CD84 Intron 0.22 TCGA-W3-AA1W-06 1 167805697 167805697 G A ADCY10 Silent p.I1053I 0.23 TCGA-W3-AA1W-06 1 169446976 169446976 G A SLC19A2 Missense_Mutation p.P75L 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 1 169551733 169551733 C T F5 Silent p.K62K 0.24 TCGA-W3-AA1W-06 1 176525454 176525454 G A PAPPA2 5'UTR 0.27 TCGA-W3-AA1W-06 1 177245431 177245431 G A BRINP2 Silent p.K291K 0.16 TCGA-W3-AA1W-06 1 181727964 181727964 C T CACNA1E Missense_Mutation p.S1522F 0.08 deleterious(0.05) possibly_damaging(0.788) TCGA-W3-AA1W-06 1 181759617 181759617 C T CACNA1E Silent p.L1941L 0.33 TCGA-W3-AA1W-06 1 183532604 183532604 C T NCF2 Silent p.K381K 0.31 TCGA-W3-AA1W-06 1 186050468 186050468 G A HMCN1 Missense_Mutation p.G2910E 0.19 probably_damaging(1) TCGA-W3-AA1W-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.22 deleterious(0) possibly_damaging(0.871) TCGA-W3-AA1W-06 1 196695904 196695904 C A CFH Silent p.T690T 0.22 TCGA-W3-AA1W-06 1 197029501 197029501 C G F13B Missense_Mutation p.C267S 0.25 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 1 197390634 197390634 C T CRB1 Missense_Mutation p.S559F 0.33 tolerated(0.07) benign(0.114) TCGA-W3-AA1W-06 1 200017802 200017802 C T NR5A2 Silent p.I322I 0.18 TCGA-W3-AA1W-06 1 200818934 200818934 C T CAMSAP2 Missense_Mutation p.P1013S 0.34 deleterious(0.03) benign(0.065) TCGA-W3-AA1W-06 1 201358315 201358315 C T LAD1 Missense_Mutation p.G52E 0.15 deleterious(0) possibly_damaging(0.821) TCGA-W3-AA1W-06 1 201981522 201981522 G A ELF3 Missense_Mutation p.D146N 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1W-06 1 20302131 20302131 G A PLA2G2A 3'UTR 0.39 TCGA-W3-AA1W-06 1 204103787 204103787 G A ETNK2 Intron 0.26 TCGA-W3-AA1W-06 1 204923391 204923391 G A NFASC Silent p.G97G 0.26 TCGA-W3-AA1W-06 1 205308447 205308447 T C KLHDC8A Missense_Mutation p.K211R 0.29 tolerated(0.95) benign(0.029) TCGA-W3-AA1W-06 1 206769095 206769095 G A EIF2D Missense_Mutation p.T494I 0.24 tolerated(0.07) benign(0.077) TCGA-W3-AA1W-06 1 21014186 21014186 C T KIF17 Missense_Mutation p.E545K 0.21 tolerated_low_confidence(0.14) benign(0.052) TCGA-W3-AA1W-06 1 2105392 2105392 C T PRKCZ Missense_Mutation p.R448C 0.21 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 1 214171392 214171392 C T PROX1 Missense_Mutation p.S505F 0.22 deleterious(0) benign(0.183) TCGA-W3-AA1W-06 1 216495296 216495296 C T USH2A Missense_Mutation p.D525N 0.11 benign(0.021) TCGA-W3-AA1W-06 1 216595492 216595492 G A USH2A Nonsense_Mutation p.R63* 0.30 TCGA-W3-AA1W-06 1 22041936 22041936 C T USP48 Missense_Mutation p.E637K 0.10 tolerated(0.38) benign(0.008) TCGA-W3-AA1W-06 1 222717175 222717175 C T HHIPL2 Silent p.G226G 0.25 TCGA-W3-AA1W-06 1 223568185 223568185 C T C1orf65 Silent p.F456F 0.24 TCGA-W3-AA1W-06 1 235594039 235594039 C T TBCE Missense_Mutation p.P194S 0.18 tolerated(0.19) benign(0.253) TCGA-W3-AA1W-06 1 238090296 238090296 G A RP11-193H5.1 RNA 0.12 TCGA-W3-AA1W-06 1 240071520 240071520 G A CHRM3 Missense_Mutation p.E257K 0.16 deleterious(0) possibly_damaging(0.814) TCGA-W3-AA1W-06 1 24448173 24448173 G A IL22RA1 Silent p.L283L 0.22 TCGA-W3-AA1W-06 1 247695407 247695407 A T OR2C3 Missense_Mutation p.I136N 0.22 deleterious(0) benign(0.391) TCGA-W3-AA1W-06 1 247712474 247712474 A T GCSAML 5'UTR 0.12 TCGA-W3-AA1W-06 1 247769016 247769016 C T OR2G3 Silent p.F43F 0.31 TCGA-W3-AA1W-06 1 248085104 248085104 C T OR2T8 Missense_Mutation p.S262F 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 1 248637477 248637477 G A OR2T3 Missense_Mutation p.D276N 0.14 deleterious(0.03) benign(0.167) TCGA-W3-AA1W-06 1 249150578 249150578 C T ZNF692 Missense_Mutation p.E195K 0.33 tolerated(0.37) benign(0.169) TCGA-W3-AA1W-06 1 26665887 26665887 C A AIM1L Nonsense_Mutation p.E206* 0.20 TCGA-W3-AA1W-06 1 27101300 27101300 C T ARID1A Nonsense_Mutation p.R1528* 0.18 TCGA-W3-AA1W-06 1 31744230 31744230 A T SNRNP40 Missense_Mutation p.N257K 0.09 tolerated(0.05) probably_damaging(0.928) TCGA-W3-AA1W-06 1 34038117 34038117 G A CSMD2 Missense_Mutation p.P2586L 0.19 deleterious(0.03) benign(0.25) TCGA-W3-AA1W-06 1 34068046 34068046 G A CSMD2 Silent p.T2213T 0.15 TCGA-W3-AA1W-06 1 3425711 3425711 G A MEGF6 Nonsense_Mutation p.Q486* 0.20 TCGA-W3-AA1W-06 1 36367804 36367804 G A AGO1 Splice_Site p.X422_splice 0.19 TCGA-W3-AA1W-06 1 37356558 37356558 C G GRIK3 Missense_Mutation p.R85S 0.18 tolerated(0.13) probably_damaging(0.916) TCGA-W3-AA1W-06 1 38192876 38192876 G A EPHA10 Missense_Mutation p.S557L 0.15 tolerated(0.4) benign(0.012) TCGA-W3-AA1W-06 1 43885944 43885944 C T SZT2 Missense_Mutation p.S404F 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-W3-AA1W-06 1 43904666 43904666 C T SZT2 Missense_Mutation p.P2175S 0.19 tolerated(0.06) possibly_damaging(0.854) TCGA-W3-AA1W-06 1 44685477 44685477 G A DMAP1 Splice_Site p.X327_splice 0.15 TCGA-W3-AA1W-06 1 45965908 45965908 C T MMACHC 5'UTR 0.20 TCGA-W3-AA1W-06 1 47495695 47495695 G A CYP4X1 Missense_Mutation p.E71K 0.15 tolerated(1) benign(0.151) TCGA-W3-AA1W-06 1 47498957 47498957 C T CYP4X1 Missense_Mutation p.R137C 0.17 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1W-06 1 47505013 47505013 G A CYP4X1 Splice_Site p.X295_splice 0.13 TCGA-W3-AA1W-06 1 52403001 52403001 G A RAB3B Silent p.I104I 0.12 TCGA-W3-AA1W-06 1 52810485 52810485 C T ZFYVE9 Missense_Mutation p.P1329S 0.31 tolerated(0.15) probably_damaging(0.973) TCGA-W3-AA1W-06 1 54562000 54562000 C T TCEANC2 Missense_Mutation p.H161Y 0.15 tolerated(0.14) possibly_damaging(0.898) TCGA-W3-AA1W-06 1 54605189 54605189 G A CDCP2 3'UTR 0.17 TCGA-W3-AA1W-06 1 70144083 70144083 G A LRRC7 Missense_Mutation p.G8R 0.43 deleterious_low_confidence(0) benign(0) TCGA-W3-AA1W-06 1 74835972 74835972 G A FPGT-TNNI3K Silent p.R670R 0.11 TCGA-W3-AA1W-06 1 75055627 75055627 C T C1orf173 Missense_Mutation p.E622K 0.14 deleterious(0.01) probably_damaging(0.946) TCGA-W3-AA1W-06 1 89659064 89659064 G A GBP4 Missense_Mutation p.A132V 0.11 deleterious(0.02) probably_damaging(0.946) TCGA-W3-AA1W-06 1 90475685 90475685 T C ZNF326 Silent p.I218I 0.16 TCGA-W3-AA1W-06 1 91779053 91779053 C T HFM1 Splice_Site p.X1082_splice 0.09 TCGA-W3-AA1W-06 1 93299188 93299188 C T RPL5 Missense_Mutation p.R54C 0.18 tolerated(0.09) possibly_damaging(0.792) TCGA-W3-AA1W-06 20 35627231 35627231 G A RBL1 Silent p.V1046V 0.12 TCGA-W3-AA1W-06 20 36874517 36874517 G A KIAA1755 Silent p.S5S 0.25 TCGA-W3-AA1W-06 20 44839182 44839182 G A CDH22 Silent p.S350S 0.21 TCGA-W3-AA1W-06 20 48744720 48744720 G A TMEM189-UBE2V1 Silent p.A161A 0.21 TCGA-W3-AA1W-06 20 49214157 49214157 G A FAM65C Silent p.L580L 0.40 TCGA-W3-AA1W-06 20 50419028 50419028 C T SALL4 5'UTR 0.33 TCGA-W3-AA1W-06 20 51870548 51870548 G A TSHZ2 Missense_Mutation p.R184Q 0.23 tolerated(0.46) possibly_damaging(0.466) TCGA-W3-AA1W-06 20 52774090 52774090 G A CYP24A1 Missense_Mutation p.S424F 0.13 deleterious(0.03) possibly_damaging(0.739) TCGA-W3-AA1W-06 20 52782299 52782299 G A CYP24A1 Silent p.F238F 0.33 TCGA-W3-AA1W-06 20 5283319 5283319 G A PROKR2 Silent p.I174I 0.16 TCGA-W3-AA1W-06 20 56179820 56179820 G A ZBP1 Missense_Mutation p.R367C 0.09 tolerated(0.05) benign(0.09) TCGA-W3-AA1W-06 20 57767490 57767490 C T ZNF831 Silent p.S472S 0.11 TCGA-W3-AA1W-06 20 57829214 57829214 C T ZNF831 Missense_Mutation p.H1484Y 0.12 tolerated(0.19) benign(0.003) TCGA-W3-AA1W-06 20 61943785 61943785 G A COL20A1 Missense_Mutation p.G606E 0.21 deleterious(0) possibly_damaging(0.859) TCGA-W3-AA1W-06 20 61943786 61943786 G C COL20A1 Silent p.G606G 0.21 TCGA-W3-AA1W-06 20 9561479 9561479 C T PAK7 Silent p.R101R 0.21 TCGA-W3-AA1W-06 21 10862953 10862953 C T IGHV1OR21-1 Silent p.F83F 0.05 TCGA-W3-AA1W-06 21 32185506 32185506 G A KRTAP8-1 Silent p.F11F 0.28 TCGA-W3-AA1W-06 21 39755748 39755748 G A ERG Silent p.F346F 0.31 TCGA-W3-AA1W-06 21 43803270 43803270 C T TMPRSS3 Silent p.V218V 0.13 TCGA-W3-AA1W-06 21 46685516 46685516 A G POFUT2 Missense_Mutation p.F391L 0.08 deleterious(0) probably_damaging(0.993) TCGA-W3-AA1W-06 21 47545926 47545926 G A COL6A2 Missense_Mutation p.G733R 0.08 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 22 17976588 17976588 G T CECR2 Silent p.L84L 0.20 TCGA-W3-AA1W-06 22 19197998 19197998 G A CLTCL1 Silent p.I1029I 0.23 TCGA-W3-AA1W-06 22 21288253 21288253 G A CRKL Silent p.K166K 0.15 TCGA-W3-AA1W-06 22 21384630 21384630 G A SLC7A4 Silent p.T331T 0.14 TCGA-W3-AA1W-06 22 22517061 22517061 G A IGLV4-60 Missense_Mutation p.D117N 0.27 tolerated(0.13) benign(0.172) TCGA-W3-AA1W-06 22 23401591 23401591 G T RTDR1 3'Flank 0.21 TCGA-W3-AA1W-06 22 26422699 26422699 C T MYO18B Silent p.F2253F 0.17 TCGA-W3-AA1W-06 22 30218364 30218364 G A ASCC2 Silent p.L167L 0.10 TCGA-W3-AA1W-06 22 30766464 30766464 C T CCDC157 Silent p.I190I 0.12 TCGA-W3-AA1W-06 22 31492858 31492858 C T SMTN Silent p.T667T 0.12 TCGA-W3-AA1W-06 22 31679271 31679271 C T PIK3IP1 Silent p.G197G 0.20 TCGA-W3-AA1W-06 22 38130510 38130510 C T TRIOBP Silent p.L1389L 0.21 TCGA-W3-AA1W-06 22 38323701 38323701 C T MICALL1 Silent p.P583P 0.19 TCGA-W3-AA1W-06 22 38355378 38355378 T A POLR2F Missense_Mutation p.L39H 0.10 deleterious(0.04) benign(0.242) TCGA-W3-AA1W-06 22 38355379 38355379 C T POLR2F Silent p.L39L 0.11 TCGA-W3-AA1W-06 22 39147339 39147339 G A SUN2 Silent p.S54S 0.10 TCGA-W3-AA1W-06 22 42609772 42609772 G A TCF20 Missense_Mutation p.P514S 0.14 probably_damaging(0.999) TCGA-W3-AA1W-06 22 44083457 44083457 C T EFCAB6 Missense_Mutation p.G346R 0.12 deleterious(0.03) probably_damaging(0.973) TCGA-W3-AA1W-06 22 49103620 49103620 G A FAM19A5 Silent p.T118T 0.18 TCGA-W3-AA1W-06 22 50695600 50695600 C T MAPK12 Missense_Mutation p.G113S 0.14 deleterious(0.02) probably_damaging(0.944) TCGA-W3-AA1W-06 22 50926447 50926447 G A MIOX Missense_Mutation p.E104K 0.18 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 22 51063762 51063762 C G ARSA Silent p.V447V 0.12 TCGA-W3-AA1W-06 2 103274325 103274325 G T SLC9A2 Missense_Mutation p.G198C 0.12 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 2 103274333 103274333 C T SLC9A2 Silent p.S200S 0.13 TCGA-W3-AA1W-06 2 103322333 103322333 C T SLC9A2 Missense_Mutation p.S669F 0.15 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1W-06 2 127821586 127821586 C T BIN1 Silent p.E207E 0.17 TCGA-W3-AA1W-06 2 137814270 137814270 C T THSD7B Silent p.H140H 0.24 TCGA-W3-AA1W-06 2 141083376 141083376 G A LRP1B Silent p.L4099L 0.18 TCGA-W3-AA1W-06 2 141812802 141812802 G A LRP1B Missense_Mutation p.P479S 0.14 possibly_damaging(0.641) TCGA-W3-AA1W-06 2 149226909 149226909 C T MBD5 Missense_Mutation p.S466L 0.20 deleterious(0) possibly_damaging(0.504) TCGA-W3-AA1W-06 2 155102469 155102469 G A GALNT13 Silent p.R277R 0.22 TCGA-W3-AA1W-06 2 155711635 155711635 G A KCNJ3 Missense_Mutation p.R439Q 0.17 tolerated_low_confidence(0.17) benign(0.037) TCGA-W3-AA1W-06 2 163133381 163133381 G A IFIH1 Missense_Mutation p.T707I 0.12 tolerated(0.17) benign(0.248) TCGA-W3-AA1W-06 2 166032661 166032661 G A SCN3A Missense_Mutation p.P82S 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA1W-06 2 168108047 168108047 G A XIRP2 Missense_Mutation p.G3382E 0.16 benign(0.004) TCGA-W3-AA1W-06 2 168726145 168726145 G A B3GALT1 Missense_Mutation p.R199Q 0.14 tolerated(0.18) possibly_damaging(0.459) TCGA-W3-AA1W-06 2 17697606 17697606 C T RAD51AP2 Missense_Mutation p.D693N 0.13 tolerated(0.2) possibly_damaging(0.536) TCGA-W3-AA1W-06 2 179429918 179429918 G A TTN Missense_Mutation p.R26981W 0.16 TCGA-W3-AA1W-06 2 179469557 179469557 C T TTN Missense_Mutation p.D18087N 0.12 TCGA-W3-AA1W-06 2 179516246 179516246 C T TTN Missense_Mutation p.E13161K 0.14 TCGA-W3-AA1W-06 2 179544667 179544667 C T TTN Silent p.E11178E 0.09 TCGA-W3-AA1W-06 2 179606363 179606363 T C TTN Missense_Mutation p.Y3866C 0.13 TCGA-W3-AA1W-06 2 179614020 179614020 T G TTN Intron 0.19 TCGA-W3-AA1W-06 2 18766401 18766401 C T NT5C1B Intron 0.15 TCGA-W3-AA1W-06 2 189859504 189859504 G A COL3A1 Missense_Mutation p.G468R 0.10 unknown(0) TCGA-W3-AA1W-06 2 189866135 189866135 C T COL3A1 Missense_Mutation p.P766S 0.19 unknown(0) TCGA-W3-AA1W-06 2 192246280 192246280 G A MYO1B Silent p.E426E 0.17 TCGA-W3-AA1W-06 2 196671484 196671484 G A DNAH7 Missense_Mutation p.R3386C 0.14 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 2 204045169 204045169 C T NBEAL1 Missense_Mutation p.P2148S 0.14 tolerated(0.07) possibly_damaging(0.582) TCGA-W3-AA1W-06 2 207622087 207622087 T A MDH1B Silent p.L48L 0.19 TCGA-W3-AA1W-06 2 208773294 208773294 G A PLEKHM3 Missense_Mutation p.P632S 0.15 tolerated(0.1) probably_damaging(1) TCGA-W3-AA1W-06 2 209142386 209142386 T G PIKFYVE Missense_Mutation p.S189R 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-W3-AA1W-06 2 209215636 209215636 G T PIKFYVE Missense_Mutation p.G1859V 0.08 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 2 211515118 211515118 G A CPS1 Missense_Mutation p.D1152N 0.20 tolerated(0.22) benign(0.1) TCGA-W3-AA1W-06 2 21228172 21228172 G A APOB Silent p.I3856I 0.09 TCGA-W3-AA1W-06 2 21234666 21234666 C T APOB Missense_Mutation p.E1692K 0.19 probably_damaging(0.985) TCGA-W3-AA1W-06 2 215279009 215279009 C T VWC2L Missense_Mutation p.A31V 0.27 tolerated(0.12) probably_damaging(0.98) TCGA-W3-AA1W-06 2 218677939 218677939 G A TNS1 Silent p.F1547F 0.31 TCGA-W3-AA1W-06 2 219222300 219222300 C T C2orf62 Silent p.A54A 0.16 TCGA-W3-AA1W-06 2 220467493 220467493 C T STK11IP Silent p.L216L 0.17 TCGA-W3-AA1W-06 2 227942609 227942609 C T COL4A4 Splice_Site p.X663_splice 0.22 TCGA-W3-AA1W-06 2 228882955 228882955 G A SPHKAP Missense_Mutation p.S872F 0.15 tolerated(0.72) benign(0.019) TCGA-W3-AA1W-06 2 230377608 230377608 G A DNER Silent p.F346F 0.24 TCGA-W3-AA1W-06 2 231134279 231134279 G A SP140 Missense_Mutation p.E425K 0.15 tolerated(0.51) benign(0.006) TCGA-W3-AA1W-06 2 234201987 234201987 C T ATG16L1 Missense_Mutation p.L572F 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-W3-AA1W-06 2 234581243 234581244 CC ACG UGT1A9 Frame_Shift_Ins p.H221Qfs*13 0.12 TCGA-W3-AA1W-06 2 234581259 234581259 G T UGT1A9 Missense_Mutation p.A227S 0.14 tolerated(0.07) benign(0.278) TCGA-W3-AA1W-06 2 237489108 237489108 G A ACKR3 5'UTR 0.13 TCGA-W3-AA1W-06 2 239102949 239102950 - A ILKAP Frame_Shift_Ins p.D49* 0.12 TCGA-W3-AA1W-06 2 241463423 241463423 A G ANKMY1 Missense_Mutation p.S482P 0.10 deleterious(0.04) benign(0.216) TCGA-W3-AA1W-06 2 242066618 242066618 G A PASK Missense_Mutation p.A571V 0.21 tolerated(0.09) benign(0.065) TCGA-W3-AA1W-06 2 242815306 242815306 C T CXXC11 Silent p.C533C 0.17 TCGA-W3-AA1W-06 2 26706516 26706516 C T OTOF Silent p.G402G 0.33 TCGA-W3-AA1W-06 2 26950687 26950687 G A KCNK3 Missense_Mutation p.G146R 0.11 deleterious(0.04) benign(0.008) TCGA-W3-AA1W-06 2 27121496 27121496 G A DPYSL5 Missense_Mutation p.M43I 0.26 tolerated(1) possibly_damaging(0.885) TCGA-W3-AA1W-06 2 27121531 27121531 G A DPYSL5 Missense_Mutation p.G55E 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1W-06 2 27438578 27438578 C T ATRAID Silent p.I203I 0.12 TCGA-W3-AA1W-06 2 29259421 29259421 C T FAM179A Silent p.F811F 0.18 TCGA-W3-AA1W-06 2 31591502 31591502 C T XDH Missense_Mutation p.G669S 0.13 tolerated(0.44) probably_damaging(0.992) TCGA-W3-AA1W-06 2 33359757 33359757 C T LTBP1 Intron 0.21 TCGA-W3-AA1W-06 2 33413825 33413825 C T LTBP1 Silent p.S536S 0.12 TCGA-W3-AA1W-06 2 37041367 37041367 G A VIT Missense_Mutation p.E649K 0.20 deleterious(0) benign(0.038) TCGA-W3-AA1W-06 2 40405569 40405569 C T SLC8A1 Missense_Mutation p.E625K 0.16 tolerated(0.11) benign(0.217) TCGA-W3-AA1W-06 2 54880911 54880911 C T SPTBN1 Missense_Mutation p.R1915C 0.25 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1W-06 2 72362363 72362363 C T CYP26B1 Silent p.E205E 0.19 TCGA-W3-AA1W-06 2 79365194 79365194 C T REG1P RNA 0.28 TCGA-W3-AA1W-06 2 85621988 85621988 G A CAPG 3'UTR 0.23 TCGA-W3-AA1W-06 2 86360313 86360313 C T PTCD3 Silent p.F462F 0.12 TCGA-W3-AA1W-06 2 87085363 87085363 C T CD8B Missense_Mutation p.D74N 0.18 tolerated(0.44) benign(0.122) TCGA-W3-AA1W-06 2 89111204 89111204 G A MIR4436A 5'Flank 0.15 TCGA-W3-AA1W-06 2 89416905 89416905 G A IGKV1-17 Silent p.F93F 0.13 TCGA-W3-AA1W-06 2 95815742 95815742 C T ZNF514 Missense_Mutation p.R163K 0.17 tolerated(1) benign(0.001) TCGA-W3-AA1W-06 2 96260089 96260089 G A TRIM43 Missense_Mutation p.M106I 0.14 tolerated(0.43) benign(0.005) TCGA-W3-AA1W-06 2 99787876 99787876 C T MITD1 Missense_Mutation p.R136Q 0.17 tolerated(0.09) possibly_damaging(0.754) TCGA-W3-AA1W-06 3 100277329 100277329 C T TMEM45A Silent p.L162L 0.25 TCGA-W3-AA1W-06 3 108076942 108076942 G A HHLA2 Missense_Mutation p.G313R 0.17 deleterious(0) probably_damaging(0.959) TCGA-W3-AA1W-06 3 108626980 108626980 G A GUCA1C Silent p.F173F 0.42 TCGA-W3-AA1W-06 3 108672526 108672526 C T GUCA1C Missense_Mutation p.M28I 0.36 tolerated(0.18) benign(0.003) TCGA-W3-AA1W-06 3 109028101 109028101 C T DPPA2 Silent p.P86P 0.10 TCGA-W3-AA1W-06 3 11059630 11059630 G A SLC6A1 Missense_Mutation p.G114R 0.27 deleterious(0.03) possibly_damaging(0.739) TCGA-W3-AA1W-06 3 11059631 11059631 G A SLC6A1 Missense_Mutation p.G114E 0.27 deleterious(0.03) probably_damaging(0.982) TCGA-W3-AA1W-06 3 119534222 119534222 G A NR1I2 Silent p.L369L 0.15 TCGA-W3-AA1W-06 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.15 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 3 124393354 124393354 C T KALRN Silent p.Y453Y 0.17 TCGA-W3-AA1W-06 3 126751416 126751416 C T PLXNA1 Silent p.I1806I 0.21 TCGA-W3-AA1W-06 3 127641924 127641924 G A KBTBD12 Missense_Mutation p.G7E 0.21 tolerated_low_confidence(0.87) benign(0.002) TCGA-W3-AA1W-06 3 129290539 129290539 G A PLXND1 Missense_Mutation p.P1076S 0.20 deleterious(0) probably_damaging(0.973) TCGA-W3-AA1W-06 3 133475687 133475687 A G TF Missense_Mutation p.N235S 0.22 tolerated(0.32) benign(0.003) TCGA-W3-AA1W-06 3 133476717 133476717 C T TF Silent p.P325P 0.25 TCGA-W3-AA1W-06 3 134070865 134070865 G A AMOTL2 3'Flank 0.07 TCGA-W3-AA1W-06 3 13660461 13660461 C T FBLN2 Missense_Mutation p.S666F 0.16 deleterious(0.03) possibly_damaging(0.583) TCGA-W3-AA1W-06 3 13896083 13896083 G A WNT7A Silent p.I172I 0.36 TCGA-W3-AA1W-06 3 139280100 139280100 C T NMNAT3 Missense_Mutation p.D134N 0.17 tolerated(0.58) benign(0.307) TCGA-W3-AA1W-06 3 146167017 146167017 C T PLSCR2 Silent p.V280V 0.16 TCGA-W3-AA1W-06 3 14696015 14696015 G A CCDC174 Missense_Mutation p.G42E 0.21 tolerated(1) benign(0.115) TCGA-W3-AA1W-06 3 14861863 14861863 C T FGD5 Missense_Mutation p.P429S 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W3-AA1W-06 3 148903232 148903232 C T CP Silent p.G693G 0.19 TCGA-W3-AA1W-06 3 151164375 151164375 C T IGSF10 Missense_Mutation p.E1132K 0.11 tolerated(0.22) benign(0.062) TCGA-W3-AA1W-06 3 160156857 160156857 G A TRIM59 Nonsense_Mutation p.Q39* 0.23 TCGA-W3-AA1W-06 3 164739066 164739066 C T SI Missense_Mutation p.E1069K 0.14 tolerated(0.52) benign(0.196) TCGA-W3-AA1W-06 3 16535257 16535257 G A RFTN1 Silent p.F40F 0.30 TCGA-W3-AA1W-06 3 167159916 167159916 C T SERPINI2 Missense_Mutation p.R400K 0.10 tolerated(0.23) benign(0.296) TCGA-W3-AA1W-06 3 169557710 169557710 C T LRRC31 3'UTR 0.09 TCGA-W3-AA1W-06 3 169831253 169831253 C T PHC3 Missense_Mutation p.D750N 0.27 tolerated(0.05) benign(0.08) TCGA-W3-AA1W-06 3 178916783 178916783 C T PIK3CA Missense_Mutation p.P57L 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-W3-AA1W-06 3 183967622 183967622 C T ECE2 Missense_Mutation p.S47F 0.11 deleterious_low_confidence(0.02) benign(0.065) TCGA-W3-AA1W-06 3 188925214 188925214 C T TPRG1 Missense_Mutation p.S14F 0.21 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-W3-AA1W-06 3 189456452 189456452 C T TP63 Silent p.P71P 0.13 TCGA-W3-AA1W-06 3 189587161 189587161 G A TP63 Missense_Mutation p.R393Q 0.15 deleterious(0) probably_damaging(0.941) TCGA-W3-AA1W-06 3 189690698 189690698 G A LEPREL1 Missense_Mutation p.S555F 0.33 deleterious(0.01) possibly_damaging(0.546) TCGA-W3-AA1W-06 3 189692443 189692443 G A LEPREL1 Silent p.F452F 0.29 TCGA-W3-AA1W-06 3 189713187 189713187 G A LEPREL1 Silent p.F175F 0.11 TCGA-W3-AA1W-06 3 193016981 193016981 G A ATP13A5 Silent p.L929L 0.27 TCGA-W3-AA1W-06 3 193156308 193156308 G A ATP13A4 Silent p.F876F 0.23 TCGA-W3-AA1W-06 3 195009897 195009897 G A ACAP2 Silent p.D709D 0.13 TCGA-W3-AA1W-06 3 3080653 3080653 G A CNTN4 Missense_Mutation p.G710E 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 3 36874273 36874273 G A TRANK1 Silent p.S2223S 0.20 TCGA-W3-AA1W-06 3 38357855 38357855 G A SLC22A14 Missense_Mutation p.G525R 0.29 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 3 38739356 38739356 C T SCN10A Silent p.L1785L 0.13 TCGA-W3-AA1W-06 3 38770098 38770098 C T SCN10A Missense_Mutation p.E859K 0.46 deleterious(0.01) benign(0.217) TCGA-W3-AA1W-06 3 38835404 38835404 C T SCN10A Missense_Mutation p.G33E 0.40 tolerated(0.19) benign(0) TCGA-W3-AA1W-06 3 38951638 38951638 C T SCN11A Silent p.T340T 0.13 TCGA-W3-AA1W-06 3 407665 407665 C T CHL1 Missense_Mutation p.P540S 0.23 tolerated(0.59) benign(0.351) TCGA-W3-AA1W-06 3 46399104 46399104 G A CCR2 Missense_Mutation p.G29D 0.16 tolerated(0.27) benign(0.01) TCGA-W3-AA1W-06 3 46399689 46399689 G A CCR2 Missense_Mutation p.G224E 0.12 tolerated(0.18) benign(0.055) TCGA-W3-AA1W-06 3 46479530 46479530 C A LTF Nonsense_Mutation p.E667* 0.33 TCGA-W3-AA1W-06 3 47038477 47038477 C T NBEAL2 Missense_Mutation p.P864S 0.21 tolerated(0.07) benign(0.066) TCGA-W3-AA1W-06 3 4732872 4732872 C T ITPR1 Silent p.F1276F 0.34 TCGA-W3-AA1W-06 3 47951136 47951136 G A MAP4 Intron 0.19 TCGA-W3-AA1W-06 3 48621947 48621947 G A COL7A1 Missense_Mutation p.P1364S 0.29 unknown(0) TCGA-W3-AA1W-06 3 49568454 49568454 C T DAG1 Silent p.A170A 0.29 TCGA-W3-AA1W-06 3 49941156 49941156 C T MST1R 5'Flank 0.36 TCGA-W3-AA1W-06 3 52840331 52840331 C T ITIH3 Silent p.I655I 0.07 TCGA-W3-AA1W-06 3 56468543 56468543 G C ERC2 Missense_Mutation p.R165G 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-AA1W-06 3 7620742 7620742 G A GRM7 Missense_Mutation p.V717M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1W-06 3 86115842 86115842 G A CADM2 Missense_Mutation p.G408E 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 3 88040919 88040919 C T HTR1F Silent p.S340S 0.32 TCGA-W3-AA1W-06 3 89259312 89259312 C T EPHA3 Silent p.F152F 0.27 TCGA-W3-AA1W-06 3 97356870 97356870 G A EPHA6 Missense_Mutation p.D910N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA1W-06 4 100237246 100237246 C T ADH1B Missense_Mutation p.D126N 0.12 deleterious(0.01) possibly_damaging(0.834) TCGA-W3-AA1W-06 4 100242475 100242475 C T ADH1B Missense_Mutation p.G5E 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-W3-AA1W-06 4 101109310 101109310 C T DDIT4L Missense_Mutation p.D36N 0.14 tolerated(0.12) possibly_damaging(0.863) TCGA-W3-AA1W-06 4 107845259 107845259 C T DKK2 Missense_Mutation p.G211E 0.11 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 4 115998072 115998072 T A NDST4 Missense_Mutation p.M41L 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-W3-AA1W-06 4 124323376 124323376 C T SPRY1 Silent p.C210C 0.24 TCGA-W3-AA1W-06 4 126411708 126411708 G A FAT4 Silent p.G4577G 0.13 TCGA-W3-AA1W-06 4 158065037 158065037 C T GLRB Missense_Mutation p.T277I 0.11 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 4 164272785 164272785 G A NPY5R 3'UTR 0.17 TCGA-W3-AA1W-06 4 166924551 166924551 C T TLL1 Missense_Mutation p.S214F 0.10 deleterious(0) probably_damaging(0.988) TCGA-W3-AA1W-06 4 176733392 176733392 C T GPM6A 5'UTR 0.14 TCGA-W3-AA1W-06 4 187516881 187516881 G A FAT1 Missense_Mutation p.S4367F 0.18 probably_damaging(0.999) TCGA-W3-AA1W-06 4 22749425 22749425 C T GBA3 Missense_Mutation p.P265S 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-W3-AA1W-06 4 23815639 23815639 G A PPARGC1A Silent p.F489F 0.19 TCGA-W3-AA1W-06 4 25005823 25005823 G A LGI2 Silent p.L296L 0.13 TCGA-W3-AA1W-06 4 40121748 40121748 C T N4BP2 Nonsense_Mutation p.Q673* 0.13 TCGA-W3-AA1W-06 4 40245054 40245054 G A RHOH Silent p.G16G 0.24 TCGA-W3-AA1W-06 4 40245221 40245221 C T RHOH Missense_Mutation p.S72F 0.20 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1W-06 4 68964643 68964643 C T TMPRSS11F Missense_Mutation p.G42E 0.18 deleterious(0) possibly_damaging(0.843) TCGA-W3-AA1W-06 4 71024190 71024190 C T C4orf40 Missense_Mutation p.S74L 0.17 tolerated(0.28) benign(0.099) TCGA-W3-AA1W-06 4 74309146 74309146 G A AFP Missense_Mutation p.R233Q 0.21 deleterious(0.04) benign(0.017) TCGA-W3-AA1W-06 4 7533353 7533353 G A SORCS2 Silent p.R215R 0.16 TCGA-W3-AA1W-06 4 79205595 79205595 C T FRAS1 Missense_Mutation p.S431F 0.21 possibly_damaging(0.775) TCGA-W3-AA1W-06 4 90856830 90856830 C G MMRN1 Missense_Mutation p.Q667E 0.11 deleterious(0.01) benign(0.188) TCGA-W3-AA1W-06 4 95496795 95496795 T G PDLIM5 Intron 0.16 TCGA-W3-AA1W-06 4 98902395 98902395 C T STPG2 Silent p.L229L 0.18 TCGA-W3-AA1W-06 5 100231390 100231390 C T ST8SIA4 Nonsense_Mutation p.W71* 0.17 TCGA-W3-AA1W-06 5 121759206 121759206 C T SNCAIP Silent p.F258F 0.22 TCGA-W3-AA1W-06 5 121787149 121787149 G A SNCAIP Silent p.E869E 0.19 TCGA-W3-AA1W-06 5 137354808 137354808 T A FAM13B 5'UTR 0.22 TCGA-W3-AA1W-06 5 137654919 137654919 G A CDC25C Nonsense_Mutation p.Q202* 0.10 TCGA-W3-AA1W-06 5 137781404 137781404 C T REEP2 Silent p.P241P 0.09 TCGA-W3-AA1W-06 5 13901432 13901432 G A DNAH5 Missense_Mutation p.R661C 0.17 possibly_damaging(0.599) TCGA-W3-AA1W-06 5 140221662 140221662 C T PCDHA8 Silent p.F252F 0.15 TCGA-W3-AA1W-06 5 140229469 140229469 C T PCDHA9 Silent p.F463F 0.22 TCGA-W3-AA1W-06 5 140308552 140308552 C T PCDHAC1 Missense_Mutation p.S692F 0.09 deleterious(0) probably_damaging(0.996) TCGA-W3-AA1W-06 5 140574139 140574139 C G PCDHB10 Missense_Mutation p.P672A 0.15 tolerated_low_confidence(0.06) benign(0.301) TCGA-W3-AA1W-06 5 140595798 140595798 C T PCDHB13 Silent p.F701F 0.22 TCGA-W3-AA1W-06 5 140751224 140751224 G A PCDHGB3 Silent p.T421T 0.13 TCGA-W3-AA1W-06 5 140754779 140754779 G A PCDHGA6 Missense_Mutation p.G377S 0.14 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-W3-AA1W-06 5 142258969 142258969 C T ARHGAP26 Missense_Mutation p.P115S 0.16 deleterious(0) benign(0.025) TCGA-W3-AA1W-06 5 143853423 143853423 C T KCTD16 Missense_Mutation p.P345S 0.22 tolerated(0.38) benign(0.195) TCGA-W3-AA1W-06 5 14609047 14609047 C T FAM105A Missense_Mutation p.S273F 0.45 deleterious(0) possibly_damaging(0.724) TCGA-W3-AA1W-06 5 147468136 147468136 G A SPINK5 Missense_Mutation p.E148K 0.28 tolerated(0.08) benign(0.329) TCGA-W3-AA1W-06 5 148207168 148207168 C T ADRB2 Silent p.L258L 0.20 TCGA-W3-AA1W-06 5 150322177 150322177 T C ZNF300P1 RNA 0.26 TCGA-W3-AA1W-06 5 153190816 153190816 G A GRIA1 3'UTR 0.12 TCGA-W3-AA1W-06 5 167553948 167553948 G A TENM2 Missense_Mutation p.R800K 0.16 tolerated(0.21) benign(0.002) TCGA-W3-AA1W-06 5 169805857 169805857 C T KCNMB1 Missense_Mutation p.E143K 0.10 tolerated(0.09) possibly_damaging(0.823) TCGA-W3-AA1W-06 5 170149807 170149807 G A KCNIP1 Missense_Mutation p.G151R 0.10 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 5 176056568 176056568 C T SNCB Missense_Mutation p.A30T 0.21 deleterious(0) benign(0.341) TCGA-W3-AA1W-06 5 176314518 176314518 G A HK3 Missense_Mutation p.L512F 0.26 deleterious(0) probably_damaging(0.989) TCGA-W3-AA1W-06 5 180338423 180338423 C T BTNL8 Missense_Mutation p.P161L 0.15 deleterious(0) possibly_damaging(0.904) TCGA-W3-AA1W-06 5 180668818 180668818 C G GNB2L1 Intron 0.17 TCGA-W3-AA1W-06 5 23524440 23524440 C A PRDM9 Intron 0.15 TCGA-W3-AA1W-06 5 31317988 31317988 G A CDH6 Silent p.T613T 0.10 TCGA-W3-AA1W-06 5 32074424 32074424 G A PDZD2 Missense_Mutation p.G1071E 0.15 deleterious(0.01) possibly_damaging(0.642) TCGA-W3-AA1W-06 5 32712557 32712557 G A NPR3 Silent p.Q225Q 0.11 TCGA-W3-AA1W-06 5 38427319 38427319 C T EGFLAM Silent p.F673F 0.14 TCGA-W3-AA1W-06 5 40843391 40843391 G A CARD6 Missense_Mutation p.D141N 0.12 tolerated(0.09) benign(0.232) TCGA-W3-AA1W-06 5 40854310 40854310 C T CARD6 Missense_Mutation p.P959L 0.46 tolerated(0.13) benign(0.142) TCGA-W3-AA1W-06 5 434262 434262 G A AHRR Silent p.R491R 0.16 TCGA-W3-AA1W-06 5 50128642 50128642 C T PARP8 Missense_Mutation p.A754V 0.14 tolerated(0.25) benign(0.143) TCGA-W3-AA1W-06 5 54275089 54275089 G T ESM1 3'UTR 0.15 TCGA-W3-AA1W-06 5 55212746 55212746 G A IL31RA Missense_Mutation p.R698K 0.10 tolerated(0.68) benign(0.041) TCGA-W3-AA1W-06 5 74647384 74647384 C T HMGCR Missense_Mutation p.P442L 0.18 tolerated(0.06) benign(0.005) TCGA-W3-AA1W-06 5 75490848 75490848 G A SV2C Missense_Mutation p.G229R 0.10 deleterious(0.01) possibly_damaging(0.901) TCGA-W3-AA1W-06 5 75913680 75913680 G A F2RL2 Silent p.A284A 0.27 TCGA-W3-AA1W-06 5 78340184 78340184 C T DMGDH Missense_Mutation p.E313K 0.19 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 5 90008191 90008191 C T GPR98 Nonsense_Mutation p.Q3044* 0.23 TCGA-W3-AA1W-06 5 90059257 90059257 C T GPR98 Missense_Mutation p.P4086S 0.33 probably_damaging(0.96) TCGA-W3-AA1W-06 5 90103428 90103428 C T GPR98 Missense_Mutation p.S4949L 0.22 possibly_damaging(0.587) TCGA-W3-AA1W-06 5 94206600 94206600 C T MCTP1 Missense_Mutation p.E740K 0.18 deleterious(0.02) probably_damaging(0.93) TCGA-W3-AA1W-06 6 110620207 110620207 G A METTL24 Missense_Mutation p.P235L 0.17 deleterious(0) possibly_damaging(0.745) TCGA-W3-AA1W-06 6 111345530 111345530 G A RPF2 Silent p.K247K 0.22 TCGA-W3-AA1W-06 6 117710910 117710910 C G ROS1 Silent p.T454T 0.14 TCGA-W3-AA1W-06 6 124979611 124979611 G A NKAIN2 Intron 0.19 TCGA-W3-AA1W-06 6 128150775 128150775 C T THEMIS Silent p.K185K 0.20 TCGA-W3-AA1W-06 6 128176193 128176193 G A THEMIS Silent p.L78L 0.21 TCGA-W3-AA1W-06 6 128294914 128294914 C T PTPRK Missense_Mutation p.R1349Q 0.25 tolerated(0.17) probably_damaging(0.975) TCGA-W3-AA1W-06 6 130762860 130762860 G A TMEM200A Missense_Mutation p.M431I 0.21 tolerated(0.83) benign(0) TCGA-W3-AA1W-06 6 131915393 131915393 G A MED23 Silent p.L1026L 0.14 TCGA-W3-AA1W-06 6 131915473 131915473 G A MED23 Missense_Mutation p.R1000C 0.13 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 6 132891553 132891553 C T TAAR6 Silent p.S31S 0.14 TCGA-W3-AA1W-06 6 132910518 132910518 C T TAAR5 Missense_Mutation p.G103E 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-W3-AA1W-06 6 144794925 144794925 C T UTRN Nonsense_Mutation p.Q1046* 0.24 TCGA-W3-AA1W-06 6 146125657 146125657 C T FBXO30 Missense_Mutation p.D629N 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 6 147830130 147830130 C T SAMD5 Silent p.F22F 0.15 TCGA-W3-AA1W-06 6 155458473 155458473 C T TIAM2 Missense_Mutation p.P453S 0.20 tolerated(0.23) benign(0.002) TCGA-W3-AA1W-06 6 159263152 159263152 C T OSTCP1 RNA 0.11 TCGA-W3-AA1W-06 6 161127552 161127552 G A PLG Missense_Mutation p.E55K 0.21 tolerated(0.53) benign(0.013) TCGA-W3-AA1W-06 6 16327490 16327490 G A ATXN1 Missense_Mutation p.S351L 0.19 tolerated(0.21) benign(0.013) TCGA-W3-AA1W-06 6 16328161 16328161 G A ATXN1 Silent p.F127F 0.18 TCGA-W3-AA1W-06 6 165808728 165808728 C T PDE10A Missense_Mutation p.E483K 0.14 tolerated(0.13) benign(0.098) TCGA-W3-AA1W-06 6 169629741 169629741 C T THBS2 Missense_Mutation p.E729K 0.23 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 6 1961196 1961196 G A GMDS Missense_Mutation p.S117F 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-W3-AA1W-06 6 24596214 24596214 G A KIAA0319 Missense_Mutation p.P230S 0.18 tolerated(0.47) benign(0.007) TCGA-W3-AA1W-06 6 25773565 25773565 C T SLC17A4 Missense_Mutation p.H257Y 0.22 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1W-06 6 25826739 25826739 G A SLC17A1 Missense_Mutation p.P53S 0.15 tolerated(0.53) benign(0.281) TCGA-W3-AA1W-06 6 27879328 27879328 G A OR2B2 Missense_Mutation p.S257F 0.11 tolerated(0.4) benign(0.182) TCGA-W3-AA1W-06 6 30138347 30138347 C T TRIM15 Silent p.F267F 0.18 TCGA-W3-AA1W-06 6 30675500 30675500 C T MDC1 Silent p.E952E 0.14 TCGA-W3-AA1W-06 6 31608284 31608284 G A BAG6 Missense_Mutation p.P976S 0.13 tolerated(0.14) probably_damaging(0.979) TCGA-W3-AA1W-06 6 31608285 31608285 G A BAG6 Silent p.A975A 0.12 TCGA-W3-AA1W-06 6 32039873 32039873 C T TNXB Silent p.R1628R 0.21 TCGA-W3-AA1W-06 6 32168762 32168762 C T NOTCH4 Silent p.V1387V 0.12 TCGA-W3-AA1W-06 6 32169061 32169061 C T NOTCH4 Silent p.R1324R 0.14 TCGA-W3-AA1W-06 6 35587958 35587958 G A FKBP5 Missense_Mutation p.S115L 0.17 tolerated(0.19) benign(0.003) TCGA-W3-AA1W-06 6 38877389 38877389 G A DNAH8 Silent p.L2986L 0.15 TCGA-W3-AA1W-06 6 4135789 4135789 C T ECI2 Silent p.A2A 0.28 TCGA-W3-AA1W-06 6 41712179 41712179 G A PGC Missense_Mutation p.S95F 0.16 deleterious(0) probably_damaging(0.915) TCGA-W3-AA1W-06 6 42893360 42893360 C T PTCRA Silent p.S262S 0.23 TCGA-W3-AA1W-06 6 43155114 43155114 C T CUL9 Silent p.I506I 0.15 TCGA-W3-AA1W-06 6 43276514 43276514 G A CRIP3 Missense_Mutation p.P6L 0.13 deleterious(0) possibly_damaging(0.827) TCGA-W3-AA1W-06 6 52619764 52619764 C T GSTA2 Silent p.G83G 0.16 TCGA-W3-AA1W-06 6 53883830 53883830 G A MLIP Missense_Mutation p.E2K 0.14 deleterious(0) possibly_damaging(0.452) TCGA-W3-AA1W-06 6 54805618 54805618 C T FAM83B Missense_Mutation p.P617S 0.19 tolerated(0.65) benign(0.09) TCGA-W3-AA1W-06 6 55039590 55039590 C T HCRTR2 Missense_Mutation p.L69F 0.14 deleterious(0) possibly_damaging(0.703) TCGA-W3-AA1W-06 6 69348848 69348848 C T BAI3 Missense_Mutation p.S94F 0.10 deleterious(0.04) probably_damaging(0.974) TCGA-W3-AA1W-06 6 7565712 7565712 G A DSP Missense_Mutation p.D300N 0.11 probably_damaging(0.996) TCGA-W3-AA1W-06 6 75825556 75825556 G A COL12A1 Silent p.F2547F 0.22 TCGA-W3-AA1W-06 6 90604514 90604514 G A GJA10 Silent p.R109R 0.19 TCGA-W3-AA1W-06 6 93965671 93965671 C T EPHA7 Missense_Mutation p.G753R 0.06 deleterious(0) benign(0.191) TCGA-W3-AA1W-06 6 94120644 94120644 C T EPHA7 Missense_Mutation p.R136K 0.10 tolerated(0.38) possibly_damaging(0.551) TCGA-W3-AA1W-06 7 100350648 100350648 G A ZAN Missense_Mutation p.E974K 0.11 unknown(0) TCGA-W3-AA1W-06 7 100369573 100369573 C T ZAN Silent p.S1785S 0.12 TCGA-W3-AA1W-06 7 100684005 100684005 G A MUC17 Missense_Mutation p.G3103E 0.15 probably_damaging(0.997) TCGA-W3-AA1W-06 7 100686264 100686264 C T MUC17 Missense_Mutation p.S3856F 0.16 possibly_damaging(0.485) TCGA-W3-AA1W-06 7 106508905 106508905 G A PIK3CG Missense_Mutation p.G300E 0.37 tolerated(0.34) possibly_damaging(0.837) TCGA-W3-AA1W-06 7 107556058 107556058 C T DLD Silent p.I264I 0.15 TCGA-W3-AA1W-06 7 107704311 107704311 G A LAMB4 Missense_Mutation p.R986W 0.25 deleterious(0.03) benign(0.043) TCGA-W3-AA1W-06 7 107704312 107704312 G A LAMB4 Silent p.S985S 0.25 TCGA-W3-AA1W-06 7 108524084 108524084 G A C7orf66 Missense_Mutation p.P110S 0.13 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-W3-AA1W-06 7 111379189 111379189 C T DOCK4 Splice_Site p.X1735_splice 0.21 TCGA-W3-AA1W-06 7 111381667 111381667 G A DOCK4 Silent p.S1607S 0.33 TCGA-W3-AA1W-06 7 111846814 111846814 G A ZNF277 Missense_Mutation p.E15K 0.15 tolerated_low_confidence(0.29) benign(0.036) TCGA-W3-AA1W-06 7 11485757 11485757 G A THSD7A Missense_Mutation p.R999C 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-W3-AA1W-06 7 115624475 115624475 G A TFEC Silent p.I7I 0.13 TCGA-W3-AA1W-06 7 117171039 117171039 G A CFTR Silent p.A120A 0.17 TCGA-W3-AA1W-06 7 117180354 117180354 C T CFTR Missense_Mutation p.A357V 0.14 tolerated(0.53) possibly_damaging(0.489) TCGA-W3-AA1W-06 7 123257680 123257680 C T ASB15 Missense_Mutation p.P114S 0.32 deleterious(0.04) possibly_damaging(0.524) TCGA-W3-AA1W-06 7 129769373 129769373 C T KLHDC10 Missense_Mutation p.T359I 0.14 tolerated(0.41) benign(0.033) TCGA-W3-AA1W-06 7 130022002 130022002 G A CPA1 Silent p.K145K 0.13 TCGA-W3-AA1W-06 7 134256383 134256383 G A AKR1B15 Missense_Mutation p.D155N 0.15 tolerated(0.09) benign(0.004) TCGA-W3-AA1W-06 7 135047593 135047593 G A CNOT4 3'UTR 0.38 TCGA-W3-AA1W-06 7 136938322 136938322 C T PTN Missense_Mutation p.G60R 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-W3-AA1W-06 7 137148327 137148327 C T DGKI Silent p.R889R 0.25 TCGA-W3-AA1W-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.24 deleterious(0) probably_damaging(0.967) TCGA-W3-AA1W-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.23 deleterious(0) possibly_damaging(0.838) TCGA-W3-AA1W-06 7 140494213 140494213 G A BRAF Silent p.P345P 0.10 TCGA-W3-AA1W-06 7 141755361 141755361 G A MGAM Nonsense_Mutation p.W1106* 0.08 TCGA-W3-AA1W-06 7 141755525 141755525 G A MGAM Missense_Mutation p.G1161E 0.14 tolerated(0.05) benign(0.026) TCGA-W3-AA1W-06 7 142028212 142028212 C T TRBV6-1 Missense_Mutation p.S12F 0.15 tolerated(0.09) benign(0.006) TCGA-W3-AA1W-06 7 142032077 142032077 C T TRBV7-1 Silent p.L13L 0.19 TCGA-W3-AA1W-06 7 142124172 142124172 G A TRBV6-8 Silent p.S102S 0.31 TCGA-W3-AA1W-06 7 143141230 143141230 C T TAS2R60 Missense_Mutation p.L229F 0.26 tolerated(0.71) benign(0.085) TCGA-W3-AA1W-06 7 143417151 143417151 C T FAM115C Silent p.V333V 0.10 TCGA-W3-AA1W-06 7 143771361 143771361 C T OR2A25 Missense_Mutation p.P17S 0.33 tolerated(1) benign(0.064) TCGA-W3-AA1W-06 7 144098530 144098530 G A NOBOX Silent p.T151T 0.15 TCGA-W3-AA1W-06 7 149418499 149418499 C T KRBA1 Silent p.L113L 0.29 TCGA-W3-AA1W-06 7 149418500 149418500 C T KRBA1 Nonsense_Mutation p.R114* 0.27 TCGA-W3-AA1W-06 7 149425633 149425633 C T KRBA1 Silent p.S498S 0.24 TCGA-W3-AA1W-06 7 150036168 150036168 C T RARRES2 Silent p.R94R 0.34 TCGA-W3-AA1W-06 7 150417511 150417511 G A GIMAP1 Missense_Mutation p.G140E 0.08 deleterious(0.02) probably_damaging(1) TCGA-W3-AA1W-06 7 154735843 154735843 G A PAXIP1-AS2 Missense_Mutation p.G99S 0.25 benign(0.037) TCGA-W3-AA1W-06 7 157926618 157926618 G A PTPRN2 Missense_Mutation p.S436F 0.16 deleterious(0) probably_damaging(0.962) TCGA-W3-AA1W-06 7 1586727 1586727 G A TMEM184A Missense_Mutation p.S368F 0.20 deleterious(0.01) possibly_damaging(0.642) TCGA-W3-AA1W-06 7 18875185 18875185 C T HDAC9 Silent p.F854F 0.17 TCGA-W3-AA1W-06 7 21939681 21939681 G A DNAH11 Missense_Mutation p.E4423K 0.21 benign(0.419) TCGA-W3-AA1W-06 7 23808793 23808793 G A STK31 Silent p.K532K 0.31 TCGA-W3-AA1W-06 7 31123866 31123866 G A ADCYAP1R1 Splice_Site p.X146_splice 0.14 TCGA-W3-AA1W-06 7 31867938 31867938 C T PDE1C Missense_Mutation p.R478Q 0.38 deleterious(0) probably_damaging(0.952) TCGA-W3-AA1W-06 7 33016018 33016018 C T FKBP9 Missense_Mutation p.P204S 0.25 tolerated(0.24) probably_damaging(0.941) TCGA-W3-AA1W-06 7 37907394 37907394 G A NME8 Missense_Mutation p.E238K 0.11 tolerated(0.41) benign(0.005) TCGA-W3-AA1W-06 7 37907395 37907395 A T NME8 Missense_Mutation p.E238V 0.10 tolerated(0.11) benign(0.185) TCGA-W3-AA1W-06 7 44579312 44579312 G A NPC1L1 Silent p.A228A 0.29 TCGA-W3-AA1W-06 7 47894629 47894629 C T PKD1L1 Silent p.R1570R 0.12 TCGA-W3-AA1W-06 7 57188460 57188460 G A ZNF479 Missense_Mutation p.S221F 0.22 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1W-06 7 7476052 7476052 G A COL28A1 Missense_Mutation p.P612S 0.28 deleterious(0.02) possibly_damaging(0.867) TCGA-W3-AA1W-06 7 82595713 82595713 C T PCLO Missense_Mutation p.G1131R 0.08 unknown(0) TCGA-W3-AA1W-06 7 82784993 82784993 C T PCLO Missense_Mutation p.E322K 0.48 unknown(0) TCGA-W3-AA1W-06 7 83014671 83014671 C T SEMA3E Missense_Mutation p.R605Q 0.26 deleterious(0) possibly_damaging(0.908) TCGA-W3-AA1W-06 7 83047787 83047787 G A SEMA3E Missense_Mutation p.H157Y 0.19 tolerated(0.08) benign(0.006) TCGA-W3-AA1W-06 7 87073034 87073034 C T ABCB4 Missense_Mutation p.G392E 0.17 deleterious(0) probably_damaging(0.954) TCGA-W3-AA1W-06 7 87816006 87816006 C T ADAM22 Intron 0.12 TCGA-W3-AA1W-06 7 92762684 92762684 T C SAMD9L Silent p.R867R 0.17 TCGA-W3-AA1W-06 7 93090162 93090162 G A CALCR Missense_Mutation p.P241S 0.11 tolerated(0.36) probably_damaging(0.999) TCGA-W3-AA1W-06 8 104343684 104343684 C T FZD6 Missense_Mutation p.P690S 0.14 tolerated_low_confidence(1) benign(0) TCGA-W3-AA1W-06 8 118842574 118842574 G A EXT1 Silent p.I393I 0.18 TCGA-W3-AA1W-06 8 11995792 11995792 C T USP17L2 Missense_Mutation p.D160N 0.14 deleterious(0.03) possibly_damaging(0.64) TCGA-W3-AA1W-06 8 12946197 12946197 G A DLC1 Missense_Mutation p.P1364L 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-W3-AA1W-06 8 12946198 12946198 G A DLC1 Missense_Mutation p.P1364S 0.17 deleterious(0.02) possibly_damaging(0.856) TCGA-W3-AA1W-06 8 130765006 130765006 G A GSDMC Missense_Mutation p.S261L 0.12 tolerated(0.29) benign(0.014) TCGA-W3-AA1W-06 8 130777930 130777930 C T GSDMC Missense_Mutation p.D172N 0.14 deleterious(0) benign(0.031) TCGA-W3-AA1W-06 8 133935606 133935606 G A TG Missense_Mutation p.E1518K 0.16 tolerated(0.16) benign(0.009) TCGA-W3-AA1W-06 8 135612766 135612766 G A ZFAT Silent p.I796I 0.19 TCGA-W3-AA1W-06 8 143957285 143957285 G A CYP11B1 Missense_Mutation p.P322S 0.15 tolerated(0.14) possibly_damaging(0.654) TCGA-W3-AA1W-06 8 145697571 145697571 C T KIFC2 Silent p.F512F 0.12 TCGA-W3-AA1W-06 8 2065676 2065676 C T MYOM2 Missense_Mutation p.P1130S 0.15 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 8 22473268 22473268 C T CCAR2 Missense_Mutation p.T484I 0.13 tolerated(0.18) benign(0.013) TCGA-W3-AA1W-06 8 24259435 24259435 T A ADAMDEC1 Missense_Mutation p.F384I 0.18 tolerated(0.93) probably_damaging(1) TCGA-W3-AA1W-06 8 24259437 24259437 C T ADAMDEC1 Silent p.F384F 0.12 TCGA-W3-AA1W-06 8 28206258 28206258 G T ZNF395 Missense_Mutation p.A507D 0.32 deleterious(0) probably_damaging(0.999) TCGA-W3-AA1W-06 8 30704619 30704619 C T TEX15 Missense_Mutation p.V639I 0.23 tolerated(0.45) benign(0.022) TCGA-W3-AA1W-06 8 31498177 31498177 C T NRG1 Missense_Mutation p.S79F 0.38 deleterious(0) possibly_damaging(0.745) TCGA-W3-AA1W-06 8 3200831 3200831 G A CSMD1 Nonsense_Mutation p.Q1206* 0.13 TCGA-W3-AA1W-06 8 37730610 37730610 G A RAB11FIP1 Silent p.S570S 0.18 TCGA-W3-AA1W-06 8 39535031 39535031 C T ADAM18 Missense_Mutation p.S536L 0.12 tolerated(0.21) benign(0.046) TCGA-W3-AA1W-06 8 42260891 42260891 C T VDAC3 Missense_Mutation p.S206F 0.24 deleterious(0.03) benign(0.046) TCGA-W3-AA1W-06 8 52287197 52287197 G A PXDNL Silent p.L1218L 0.17 TCGA-W3-AA1W-06 8 53055536 53055536 G A ST18 Missense_Mutation p.P708S 0.17 tolerated(0.32) probably_damaging(0.919) TCGA-W3-AA1W-06 8 55538718 55538718 G A RP1 Missense_Mutation p.R759K 0.18 tolerated(0.53) benign(0.01) TCGA-W3-AA1W-06 8 55542442 55542442 G A RP1 Silent p.L2000L 0.19 TCGA-W3-AA1W-06 8 62212752 62212752 G A CLVS1 Silent p.L122L 0.20 TCGA-W3-AA1W-06 8 71619375 71619375 G A XKR9 Silent p.A160A 0.26 TCGA-W3-AA1W-06 8 72964851 72964851 C T TRPA1 Silent p.T598T 0.10 TCGA-W3-AA1W-06 8 77618134 77618134 G A ZFHX4 Missense_Mutation p.G604E 0.18 benign(0.024) TCGA-W3-AA1W-06 8 79629615 79629615 G A ZC2HC1A Missense_Mutation p.E289K 0.13 tolerated(0.07) benign(0.424) TCGA-W3-AA1W-06 8 99961381 99961381 C T OSR2 Silent p.S67S 0.10 TCGA-W3-AA1W-06 9 104449185 104449185 C T GRIN3A Missense_Mutation p.E333K 0.34 tolerated(0.11) benign(0.05) TCGA-W3-AA1W-06 9 105767430 105767430 G A CYLC2 Missense_Mutation p.D173N 0.23 tolerated(0.07) unknown(0) TCGA-W3-AA1W-06 9 112963495 112963495 G A C9orf152 Silent p.L151L 0.27 TCGA-W3-AA1W-06 9 113562656 113562656 C T MUSK Silent p.F666F 0.31 TCGA-W3-AA1W-06 9 125391181 125391181 G A OR1B1 Missense_Mutation p.L212F 0.34 tolerated(0.11) benign(0.111) TCGA-W3-AA1W-06 9 125391182 125391182 G A OR1B1 Silent p.F211F 0.34 TCGA-W3-AA1W-06 9 125424775 125424775 C T OR1L1 Nonsense_Mutation p.Q261* 0.21 TCGA-W3-AA1W-06 9 129812379 129812379 G A RALGPS1 Missense_Mutation p.E120K 0.32 deleterious(0) possibly_damaging(0.644) TCGA-W3-AA1W-06 9 132084721 132084721 T G C9orf106 RNA 0.35 TCGA-W3-AA1W-06 9 137801885 137801885 G A FCN1 Missense_Mutation p.S247F 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 9 138557167 138557167 G A LCN9 Silent p.R128R 0.43 TCGA-W3-AA1W-06 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.34 TCGA-W3-AA1W-06 9 3932415 3932415 G A GLIS3 Missense_Mutation p.S643F 0.26 deleterious(0) probably_damaging(0.998) TCGA-W3-AA1W-06 9 65505648 65505648 C T SPATA31A7 Missense_Mutation p.G638S 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA1W-06 9 71155619 71155619 C T TMEM252 Missense_Mutation p.G38R 0.62 tolerated(0.44) benign(0.017) TCGA-W3-AA1W-06 9 74846080 74846080 A G GDA Missense_Mutation p.K324R 0.32 deleterious(0.01) possibly_damaging(0.806) TCGA-W3-AA1W-06 9 84530580 84530580 T C SPATA31D5P RNA 0.55 TCGA-W3-AA1W-06 9 99489089 99489089 C T RP11-535M15.2 RNA 0.31 TCGA-W3-AA1W-06 9 99797972 99797972 C T CTSV Missense_Mutation p.E209K 0.45 tolerated(0.08) benign(0.002) TCGA-W3-AA1W-06 X 108902584 108902584 G A ACSL4 Silent p.A659A 0.40 TCGA-W3-AA1W-06 X 130222630 130222630 C T ARHGAP36 Silent p.S505S 0.30 TCGA-W3-AA1W-06 X 134989189 134989189 G A SAGE1 Missense_Mutation p.G281R 0.45 deleterious(0.01) possibly_damaging(0.7) TCGA-W3-AA1W-06 X 140785576 140785576 T C SPANXD 3'UTR 0.28 TCGA-W3-AA1W-06 X 140786537 140786537 C T SPANXD Missense_Mutation p.G9E 0.24 deleterious(0.01) possibly_damaging(0.709) TCGA-W3-AA1W-06 X 140984379 140984379 G A MAGEC3 Intron 0.40 TCGA-W3-AA1W-06 X 140985116 140985116 C T MAGEC3 Silent p.F524F 0.38 TCGA-W3-AA1W-06 X 140985306 140985306 G A MAGEC3 Intron 0.36 TCGA-W3-AA1W-06 X 151130965 151130965 C T GABRE Missense_Mutation p.E165K 0.51 tolerated(0.14) probably_damaging(0.989) TCGA-W3-AA1W-06 X 151869925 151869925 C T MAGEA6 Silent p.I205I 0.32 TCGA-W3-AA1W-06 X 21985377 21985377 C G SMS Missense_Mutation p.S38W 0.51 deleterious(0) possibly_damaging(0.641) TCGA-W3-AA1W-06 X 22291568 22291568 C T ZNF645 Missense_Mutation p.R154C 0.40 tolerated(0.17) benign(0.091) TCGA-W3-AA1W-06 X 3235774 3235774 G A MXRA5 Missense_Mutation p.S1983F 0.83 deleterious(0) probably_damaging(0.995) TCGA-W3-AA1W-06 X 47918978 47918978 G A ZNF630 Missense_Mutation p.H285Y 0.60 tolerated(0.1) possibly_damaging(0.619) TCGA-W3-AA1W-06 X 47979019 47979019 C T SSX6 RNA 0.52 TCGA-W3-AA1W-06 X 53113946 53113946 C T TSPYL2 Missense_Mutation p.L299F 0.64 tolerated(0.18) possibly_damaging(0.705) TCGA-W3-AA1W-06 X 69176881 69176881 C T EDA Missense_Mutation p.A134V 0.59 tolerated_low_confidence(0.09) unknown(0) TCGA-W3-AA1W-06 X 69419713 69419713 G A DGAT2L6 Missense_Mutation p.R83Q 0.65 tolerated(0.2) benign(0.002) TCGA-W3-AA1W-06 X 70148013 70148013 C T SLC7A3 Missense_Mutation p.D268N 0.19 deleterious(0.04) possibly_damaging(0.479) TCGA-W3-AA1W-06 X 70679099 70679099 C T TAF1 Intron 0.21 TCGA-W3-AA1W-06 X 70823953 70823953 G A ACRC Missense_Mutation p.D276N 0.25 unknown(0) TCGA-W3-AA1W-06 X 78011115 78011115 T G LPAR4 Missense_Mutation p.M250R 0.35 deleterious(0) probably_damaging(1) TCGA-W3-AA1W-06 X 86873099 86873099 G A KLHL4 Missense_Mutation p.E298K 0.25 tolerated(0.06) benign(0.007) TCGA-W3-AA1W-06 X 99920248 99920248 C T SRPX2 Missense_Mutation p.P181S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA21-06 10 105036983 105036983 G A INA Silent p.S5S 0.46 TCGA-W3-AA21-06 10 105803335 105803335 C T COL17A1 Silent p.G813G 0.38 TCGA-W3-AA21-06 10 107022195 107022195 G A SORCS3 Missense_Mutation p.D1184N 0.41 deleterious(0.04) benign(0.022) TCGA-W3-AA21-06 10 115413821 115413821 C T NRAP Missense_Mutation p.E142K 0.33 deleterious(0.04) benign(0.012) TCGA-W3-AA21-06 10 123843028 123843028 G A TACC2 Missense_Mutation p.G338E 0.41 benign(0.209) TCGA-W3-AA21-06 10 12940637 12940637 C T CCDC3 Missense_Mutation p.D198N 0.56 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-W3-AA21-06 10 134563328 134563328 C T INPP5A Silent p.F294F 0.36 TCGA-W3-AA21-06 10 135195079 135195079 C T PAOX Missense_Mutation p.P262S 0.36 tolerated(0.23) benign(0.406) TCGA-W3-AA21-06 10 22676833 22676833 C T SPAG6 Missense_Mutation p.P254S 0.33 deleterious(0.03) probably_damaging(1) TCGA-W3-AA21-06 10 24833155 24833155 T C KIAA1217 Silent p.I1652I 0.37 TCGA-W3-AA21-06 10 29818695 29818695 G A SVIL Missense_Mutation p.R729C 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 10 30657536 30657536 C T AL161651.1 5'Flank 0.45 TCGA-W3-AA21-06 10 37486217 37486217 G A ANKRD30A Missense_Mutation p.E819K 0.49 tolerated(0.15) benign(0.003) TCGA-W3-AA21-06 10 37508601 37508601 C T ANKRD30A Nonsense_Mutation p.Q1265* 0.42 TCGA-W3-AA21-06 10 43601914 43601914 C T RET Missense_Mutation p.P320S 0.45 tolerated(0.87) benign(0.005) TCGA-W3-AA21-06 10 50530887 50530887 C T C10orf71 Silent p.F99F 0.45 TCGA-W3-AA21-06 10 55587279 55587279 C T PCDH15 Missense_Mutation p.R1414Q 0.28 deleterious(0.03) benign(0.298) TCGA-W3-AA21-06 10 62021716 62021716 C T ANK3 Splice_Site p.X234_splice 0.31 TCGA-W3-AA21-06 10 69571304 69571304 G A DNAJC12 Missense_Mutation p.A92V 0.42 deleterious(0.02) benign(0.093) TCGA-W3-AA21-06 10 71902572 71902572 G A TYSND1 Silent p.G445G 0.18 TCGA-W3-AA21-06 10 75239265 75239265 G A PPP3CB Silent p.F32F 0.45 TCGA-W3-AA21-06 10 7618491 7618491 C T ITIH5 Missense_Mutation p.E635K 0.45 tolerated(0.5) benign(0.287) TCGA-W3-AA21-06 10 7618832 7618832 C T ITIH5 Missense_Mutation p.R521K 0.48 tolerated(0.94) benign(0.012) TCGA-W3-AA21-06 10 86198276 86198276 C T CCSER2 Missense_Mutation p.P626L 0.44 tolerated(0.19) probably_damaging(0.999) TCGA-W3-AA21-06 10 87898777 87898777 G A GRID1 Silent p.I175I 0.52 TCGA-W3-AA21-06 10 88428473 88428473 G A LDB3 Missense_Mutation p.G9R 0.24 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 10 88769042 88769042 G T RP11-96C23.10 3'Flank 0.46 TCGA-W3-AA21-06 10 89268135 89268135 G A MINPP1 Missense_Mutation p.R227K 0.36 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 10 98380250 98380250 C T PIK3AP1 Missense_Mutation p.M600I 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-W3-AA21-06 11 1017850 1017850 C G MUC6 Missense_Mutation p.G1651R 0.05 unknown(0) TCGA-W3-AA21-06 11 104872827 104872827 G T CASP5 Missense_Mutation p.D228E 0.39 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 11 107578585 107578585 G A SLN Silent p.L24L 0.51 TCGA-W3-AA21-06 11 116661410 116661410 G A APOA5 Missense_Mutation p.R179C 0.57 deleterious(0.04) benign(0.024) TCGA-W3-AA21-06 11 119210026 119210026 A T C1QTNF5 3'UTR 0.30 TCGA-W3-AA21-06 11 119210027 119210027 C T C1QTNF5 3'UTR 0.30 TCGA-W3-AA21-06 11 120976630 120976630 C T TECTA Missense_Mutation p.A52V 0.34 tolerated(0.54) benign(0.053) TCGA-W3-AA21-06 11 121495847 121495847 G A SORL1 Silent p.G2075G 0.52 TCGA-W3-AA21-06 11 12315851 12315851 G A MICALCL Silent p.G291G 0.40 TCGA-W3-AA21-06 11 123989726 123989726 C T VWA5A Silent p.L230L 0.38 TCGA-W3-AA21-06 11 124440716 124440716 C T OR8A1 Missense_Mutation p.S251F 0.39 deleterious(0.05) probably_damaging(0.972) TCGA-W3-AA21-06 11 125448075 125448075 C T EI24 Silent p.F121F 0.38 TCGA-W3-AA21-06 11 128781866 128781866 C T KCNJ5 Missense_Mutation p.S233F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA21-06 11 129762670 129762670 G A NFRKB Silent p.I38I 0.44 TCGA-W3-AA21-06 11 130340885 130340885 C T ADAMTS15 Silent p.L597L 0.46 TCGA-W3-AA21-06 11 15096343 15096343 C T CALCB Missense_Mutation p.P27S 0.36 deleterious(0.03) possibly_damaging(0.624) TCGA-W3-AA21-06 11 17332492 17332492 G A NUCB2 Missense_Mutation p.E202K 0.42 tolerated(0.92) benign(0.012) TCGA-W3-AA21-06 11 1780786 1780786 C T CTSD Nonsense_Mutation p.W104* 0.38 TCGA-W3-AA21-06 11 294788 294788 C T ATHL1 3'UTR 0.32 TCGA-W3-AA21-06 11 32953841 32953841 C T QSER1 Missense_Mutation p.S217L 0.56 deleterious(0.02) benign(0.075) TCGA-W3-AA21-06 11 43465597 43465614 GTTTCCCAGATTACATTC - TTC17 Splice_Site p.X838_splice 0.29 TCGA-W3-AA21-06 11 46911952 46911952 G A LRP4 Silent p.L597L 0.50 TCGA-W3-AA21-06 11 4703092 4703092 G A OR51E2 Missense_Mutation p.P284S 0.29 deleterious(0.01) possibly_damaging(0.793) TCGA-W3-AA21-06 11 51411849 51411849 C T OR4A5 Missense_Mutation p.E183K 0.41 tolerated_low_confidence(1) benign(0.049) TCGA-W3-AA21-06 11 5411020 5411020 C T OR51M1 Missense_Mutation p.S131F 0.27 deleterious(0) probably_damaging(0.983) TCGA-W3-AA21-06 11 56114099 56114099 T C OR8K1 Silent p.C195C 0.49 TCGA-W3-AA21-06 11 56344440 56344440 C T OR5M10 Missense_Mutation p.G253E 0.42 deleterious(0) possibly_damaging(0.558) TCGA-W3-AA21-06 11 57798983 57798983 C T OR6Q1 Missense_Mutation p.P187S 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA21-06 11 58034467 58034467 C T OR10W1 Missense_Mutation p.M288I 0.42 tolerated(0.21) benign(0.006) TCGA-W3-AA21-06 11 5841832 5841832 C T OR52N2 Silent p.F89F 0.29 TCGA-W3-AA21-06 11 6500481 6500481 G A ARFIP2 Silent p.G68G 0.27 TCGA-W3-AA21-06 11 65272766 65272768 GCC CT MALAT1 RNA 0.35 TCGA-W3-AA21-06 11 6630144 6630144 A G ILK Missense_Mutation p.N160D 0.32 tolerated(0.38) benign(0.002) TCGA-W3-AA21-06 11 66407441 66407441 C T RBM4 Missense_Mutation p.P87S 0.38 tolerated(0.71) benign(0.012) TCGA-W3-AA21-06 11 67812568 67812568 C T TCIRG1 Silent p.P388P 0.30 TCGA-W3-AA21-06 11 74800273 74800273 G A OR2AT4 Silent p.I162I 0.41 TCGA-W3-AA21-06 11 92087317 92087317 G A FAT3 Missense_Mutation p.S680N 0.44 benign(0.005) TCGA-W3-AA21-06 11 92087490 92087490 G A FAT3 Missense_Mutation p.D738N 0.31 benign(0.14) TCGA-W3-AA21-06 11 99827542 99827542 C T CNTN5 Silent p.I226I 0.45 TCGA-W3-AA21-06 12 100784871 100784871 C T SLC17A8 Silent p.F149F 0.38 TCGA-W3-AA21-06 12 101870673 101870673 T A SPIC 5'UTR 0.35 TCGA-W3-AA21-06 12 104042597 104042597 C T STAB2 Silent p.L390L 0.38 TCGA-W3-AA21-06 12 104042598 104042598 C T STAB2 Silent p.L391L 0.35 TCGA-W3-AA21-06 12 104517094 104517094 G A NFYB Silent p.I113I 0.35 TCGA-W3-AA21-06 12 108138415 108138415 G A PRDM4 Missense_Mutation p.P434S 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-W3-AA21-06 12 113824831 113824831 C T PLBD2 Missense_Mutation p.A459V 0.39 deleterious(0) probably_damaging(0.999) TCGA-W3-AA21-06 12 114839672 114839672 G A TBX5 Silent p.F67F 0.29 TCGA-W3-AA21-06 12 121437411 121437411 G A HNF1A Silent p.R583R 0.32 TCGA-W3-AA21-06 12 14781645 14781645 C T GUCY2C Nonsense_Mutation p.W728* 0.35 TCGA-W3-AA21-06 12 15637049 15637049 G A PTPRO Missense_Mutation p.E73K 0.36 deleterious_low_confidence(0.02) benign(0.092) TCGA-W3-AA21-06 12 18234064 18234064 A C RERGL 3'UTR 0.28 TCGA-W3-AA21-06 12 1955821 1955821 C T CACNA2D4 Missense_Mutation p.G761S 0.17 deleterious(0) possibly_damaging(0.78) TCGA-W3-AA21-06 12 21028319 21028319 C T SLCO1B3 Missense_Mutation p.S293L 0.24 deleterious(0.04) benign(0.16) TCGA-W3-AA21-06 12 21172237 21172237 G A SLCO1B7 Silent p.P47P 0.22 TCGA-W3-AA21-06 12 31540615 31540615 G A DENND5B Silent p.S1249S 0.53 TCGA-W3-AA21-06 12 33538111 33538111 G A SYT10 Missense_Mutation p.S398L 0.57 tolerated(0.64) benign(0.11) TCGA-W3-AA21-06 12 33579424 33579424 G A SYT10 Missense_Mutation p.S53L 0.56 deleterious(0.02) benign(0.061) TCGA-W3-AA21-06 12 41352944 41352944 G A CNTN1 Missense_Mutation p.R571Q 0.41 tolerated(0.2) benign(0.166) TCGA-W3-AA21-06 12 42858953 42858953 G A PRICKLE1 Missense_Mutation p.P295S 0.40 deleterious(0) probably_damaging(0.997) TCGA-W3-AA21-06 12 43837674 43837674 A G ADAMTS20 Missense_Mutation p.V737A 0.39 deleterious(0) possibly_damaging(0.702) TCGA-W3-AA21-06 12 48133013 48133013 C T RAPGEF3 Missense_Mutation p.D792N 0.61 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 12 50503345 50503345 G A GPD1 3'UTR 0.50 TCGA-W3-AA21-06 12 52799852 52799852 C T KRT82 Silent p.R70R 0.32 TCGA-W3-AA21-06 12 53039353 53039353 C T KRT2 Silent p.R490R 0.45 TCGA-W3-AA21-06 12 53454276 53454276 C T TENC1 Missense_Mutation p.S912L 0.59 tolerated(0.12) benign(0.207) TCGA-W3-AA21-06 12 53495882 53495882 G A IGFBP6 Missense_Mutation p.M218I 0.24 tolerated(0.14) probably_damaging(0.996) TCGA-W3-AA21-06 12 54917713 54917713 G A NCKAP1L Missense_Mutation p.S710N 0.49 tolerated(0.31) benign(0.139) TCGA-W3-AA21-06 12 55759538 55759538 C T OR6C75 Missense_Mutation p.S215F 0.45 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-W3-AA21-06 12 55794629 55794629 G A OR6C65 Missense_Mutation p.G106E 0.40 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-W3-AA21-06 12 55863913 55863913 G A OR6C70 Missense_Mutation p.H4Y 0.19 tolerated_low_confidence(0.13) benign(0.003) TCGA-W3-AA21-06 12 57327804 57327804 G A SDR9C7 Missense_Mutation p.T81I 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-W3-AA21-06 12 58128436 58128436 C T AGAP2 Silent p.G418G 0.37 TCGA-W3-AA21-06 12 6085351 6085351 C T VWF Missense_Mutation p.D2455N 0.22 tolerated(0.14) probably_damaging(0.948) TCGA-W3-AA21-06 12 6140703 6140703 C T VWF Silent p.V909V 0.43 TCGA-W3-AA21-06 12 6969595 6969595 C T USP5 Silent p.F428F 0.25 TCGA-W3-AA21-06 12 72013712 72013712 G A ZFC3H1 Silent p.I1681I 0.28 TCGA-W3-AA21-06 12 73015525 73015525 G A TRHDE Missense_Mutation p.R845K 0.30 tolerated(1) benign(0.013) TCGA-W3-AA21-06 12 7586258 7586258 C T CD163L1 Missense_Mutation p.G53R 0.52 deleterious(0.01) probably_damaging(1) TCGA-W3-AA21-06 12 76740960 76740960 A G BBS10 Missense_Mutation p.S269P 0.25 deleterious(0.02) benign(0.281) TCGA-W3-AA21-06 12 91502023 91502023 C T LUM Missense_Mutation p.G245E 0.47 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 13 115090566 115090566 C T CHAMP1 Missense_Mutation p.P417S 0.51 tolerated(0.1) benign(0.057) TCGA-W3-AA21-06 13 33092078 33092078 T C N4BP2L2 Missense_Mutation p.Q109R 0.41 deleterious(0) benign(0.254) TCGA-W3-AA21-06 13 33704213 33704213 C T STARD13 Missense_Mutation p.E201K 0.33 tolerated(0.44) possibly_damaging(0.703) TCGA-W3-AA21-06 13 37012980 37012980 G A CCNA1 Missense_Mutation p.G290E 0.37 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 13 42404765 42404765 G A VWA8 Nonsense_Mutation p.R534* 0.26 TCGA-W3-AA21-06 13 52548655 52548655 C T ATP7B Missense_Mutation p.R234K 0.44 tolerated(0.83) benign(0.001) TCGA-W3-AA21-06 13 72204773 72204773 G A DACH1 Silent p.I349I 0.43 TCGA-W3-AA21-06 14 101441163 101441163 G A SNORD114-17 RNA 0.34 TCGA-W3-AA21-06 14 106236210 106236210 C T IGHG3 Missense_Mutation p.E199K 0.45 tolerated(0.08) possibly_damaging(0.476) TCGA-W3-AA21-06 14 20216249 20216249 C T OR4Q3 Silent p.I221I 0.37 TCGA-W3-AA21-06 14 20443748 20443748 C T OR4K15 Missense_Mutation p.S24L 0.33 deleterious(0) possibly_damaging(0.543) TCGA-W3-AA21-06 14 20665686 20665686 C T OR11G2 Silent p.L64L 0.43 TCGA-W3-AA21-06 14 20926706 20926706 G A TMEM55B 3'UTR 0.45 TCGA-W3-AA21-06 14 23826475 23826475 G A EFS Missense_Mutation p.A549V 0.31 deleterious(0) probably_damaging(0.952) TCGA-W3-AA21-06 14 24534261 24534261 C T LRRC16B Missense_Mutation p.R1059C 0.47 deleterious(0.02) possibly_damaging(0.876) TCGA-W3-AA21-06 14 24568260 24568260 G A PCK2 Missense_Mutation p.E223K 0.48 tolerated(0.52) benign(0.158) TCGA-W3-AA21-06 14 31353845 31353845 G A COCH Missense_Mutation p.G239E 0.45 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 14 36004162 36004162 C T INSM2 Missense_Mutation p.P235L 0.56 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 14 37203753 37203753 G A SLC25A21 Silent p.L77L 0.62 TCGA-W3-AA21-06 14 38723926 38723926 C T CLEC14A Silent p.R434R 0.50 TCGA-W3-AA21-06 14 51230634 51230634 G A NIN Missense_Mutation p.R562C 0.47 deleterious(0) possibly_damaging(0.768) TCGA-W3-AA21-06 14 60591307 60591307 C T PCNXL4 Silent p.S572S 0.38 TCGA-W3-AA21-06 14 72941367 72941367 G A RGS6 Missense_Mutation p.R218Q 0.50 deleterious(0.05) benign(0.011) TCGA-W3-AA21-06 14 79432412 79432412 G A NRXN3 Missense_Mutation p.E441K 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-W3-AA21-06 14 92159785 92159785 C T CATSPERB Missense_Mutation p.D219N 0.35 tolerated(0.37) benign(0) TCGA-W3-AA21-06 14 92343862 92343862 G A FBLN5 Missense_Mutation p.S385F 0.48 deleterious(0) probably_damaging(0.942) TCGA-W3-AA21-06 14 93299515 93299515 C T GOLGA5 Nonsense_Mutation p.R590* 0.39 TCGA-W3-AA21-06 14 93712367 93712367 G A BTBD7 Missense_Mutation p.P796L 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W3-AA21-06 14 94697620 94697620 G A PPP4R4 Missense_Mutation p.E162K 0.27 tolerated(0.13) benign(0.032) TCGA-W3-AA21-06 14 94722800 94722800 G A PPP4R4 Missense_Mutation p.M623I 0.33 tolerated(0.29) benign(0.002) TCGA-W3-AA21-06 14 95670770 95670770 G A CLMN Missense_Mutation p.P306S 0.40 deleterious(0.02) probably_damaging(0.925) TCGA-W3-AA21-06 15 20496624 20496624 G A CHEK2P2 RNA 0.13 TCGA-W3-AA21-06 15 20658716 20658716 G A HERC2P3 RNA 0.24 TCGA-W3-AA21-06 15 24921383 24921383 C T NPAP1 Silent p.F123F 0.44 TCGA-W3-AA21-06 15 25328736 25328736 G A SNORD116-17 RNA 0.39 TCGA-W3-AA21-06 15 25470262 25470262 C T SNORD115-27 3'Flank 0.49 TCGA-W3-AA21-06 15 34102837 34102837 C T RYR3 Missense_Mutation p.S3395L 0.45 benign(0.001) TCGA-W3-AA21-06 15 34376622 34376622 C A EMC7 Missense_Mutation p.M214I 0.41 tolerated(0.29) benign(0.025) TCGA-W3-AA21-06 15 41999970 41999970 C T MGA Missense_Mutation p.L745F 0.42 deleterious(0) probably_damaging(0.999) TCGA-W3-AA21-06 15 42103137 42103137 G A MAPKBP1 Missense_Mutation p.S88N 0.44 deleterious(0.01) benign(0.045) TCGA-W3-AA21-06 15 42632906 42632906 C T GANC Silent p.F702F 0.41 TCGA-W3-AA21-06 15 43309360 43309360 C T UBR1 Missense_Mutation p.R987Q 0.29 tolerated(0.61) possibly_damaging(0.656) TCGA-W3-AA21-06 15 43527978 43527978 C A TGM5 Missense_Mutation p.S468I 0.47 tolerated(0.18) benign(0.013) TCGA-W3-AA21-06 15 44918560 44918560 A T SPG11 Missense_Mutation p.I738K 0.43 deleterious(0.01) possibly_damaging(0.696) TCGA-W3-AA21-06 15 45270861 45270861 C T C15orf43 3'UTR 0.68 TCGA-W3-AA21-06 15 51502877 51502877 G A CYP19A1 3'UTR 0.68 TCGA-W3-AA21-06 15 54586115 54586115 C T UNC13C Nonsense_Mutation p.R1281* 0.42 TCGA-W3-AA21-06 15 58467141 58467141 G A AQP9 Missense_Mutation p.G134E 0.44 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 15 65746637 65746637 G A DPP8 Silent p.S761S 0.55 TCGA-W3-AA21-06 15 65917338 65917338 C T SLC24A1 Missense_Mutation p.P307L 0.41 possibly_damaging(0.908) TCGA-W3-AA21-06 15 71175212 71175212 G A THAP10 Silent p.P155P 0.38 TCGA-W3-AA21-06 15 71305160 71305160 G A LRRC49 Missense_Mutation p.M542I 0.48 tolerated(0.8) benign(0.001) TCGA-W3-AA21-06 15 71433876 71433876 C T THSD4 Missense_Mutation p.H4Y 0.47 tolerated_low_confidence(0.63) benign(0.253) TCGA-W3-AA21-06 15 74628459 74628459 T G CCDC33 3'UTR 0.56 TCGA-W3-AA21-06 15 81598844 81598844 C T IL16 Silent p.L1255L 0.32 TCGA-W3-AA21-06 15 84582058 84582058 C T ADAMTSL3 Missense_Mutation p.P639S 0.40 tolerated(0.41) benign(0.002) TCGA-W3-AA21-06 15 90801988 90801988 C T TTLL13 Missense_Mutation p.P394L 0.31 deleterious(0) probably_damaging(0.999) TCGA-W3-AA21-06 15 91769623 91769623 G A SV2B Missense_Mutation p.E44K 0.46 deleterious(0) possibly_damaging(0.756) TCGA-W3-AA21-06 16 16173254 16173254 C T ABCC1 Silent p.G678G 0.43 TCGA-W3-AA21-06 16 24902366 24902366 C T SLC5A11 Missense_Mutation p.P281S 0.33 tolerated(0.55) probably_damaging(0.98) TCGA-W3-AA21-06 16 24902367 24902367 C T SLC5A11 Missense_Mutation p.P281L 0.34 tolerated(1) possibly_damaging(0.516) TCGA-W3-AA21-06 16 27374350 27374350 C T IL4R Silent p.L559L 0.48 TCGA-W3-AA21-06 16 27374351 27374351 C T IL4R Nonsense_Mutation p.Q560* 0.47 TCGA-W3-AA21-06 16 30364912 30364912 G A CD2BP2 Silent p.S195S 0.34 TCGA-W3-AA21-06 16 30795016 30795016 G A ZNF629 Silent p.C211C 0.44 TCGA-W3-AA21-06 16 31477577 31477577 C T ARMC5 Silent p.P725P 0.32 TCGA-W3-AA21-06 16 56917965 56917965 G A SLC12A3 Nonsense_Mutation p.W558* 0.23 TCGA-W3-AA21-06 16 57153556 57153556 C T CPNE2 Silent p.P225P 0.43 TCGA-W3-AA21-06 16 70163018 70163018 C T PDPR Silent p.S200S 0.23 TCGA-W3-AA21-06 16 70977742 70977742 G A HYDIN Silent p.L2214L 0.48 TCGA-W3-AA21-06 16 71823325 71823325 G A AP1G1 Nonsense_Mutation p.Q20* 0.35 TCGA-W3-AA21-06 16 75669841 75669841 A G KARS Missense_Mutation p.L241S 0.39 deleterious(0) probably_damaging(0.997) TCGA-W3-AA21-06 16 83520085 83520085 C T CDH13 Missense_Mutation p.T309I 0.37 deleterious(0) probably_damaging(0.979) TCGA-W3-AA21-06 16 83999090 83999090 C T OSGIN1 Silent p.A304A 0.44 TCGA-W3-AA21-06 17 11795250 11795250 C A DNAH9 Missense_Mutation p.Q3757K 0.35 possibly_damaging(0.864) TCGA-W3-AA21-06 17 17701156 17701156 T C RAI1 Missense_Mutation p.S1632P 0.76 tolerated(0.09) benign(0.372) TCGA-W3-AA21-06 17 18389395 18389395 C T LGALS9C Silent p.F93F 0.74 TCGA-W3-AA21-06 17 2867212 2867212 C T RAP1GAP2 Silent p.I114I 0.58 TCGA-W3-AA21-06 17 33513584 33513584 G A UNC45B 3'UTR 0.83 TCGA-W3-AA21-06 17 38176122 38176122 G A MED24 Silent p.F923F 1.00 TCGA-W3-AA21-06 17 38926344 38926344 C T KRT26 Missense_Mutation p.G238R 0.75 deleterious(0.01) probably_damaging(1) TCGA-W3-AA21-06 17 38955914 38955914 C T KRT28 Missense_Mutation p.E78K 0.70 deleterious(0) possibly_damaging(0.626) TCGA-W3-AA21-06 17 39674812 39674812 C T KRT15 Missense_Mutation p.G90S 0.81 tolerated(0.43) unknown(0) TCGA-W3-AA21-06 17 48696344 48696344 C T CACNA1G Missense_Mutation p.S1919F 0.11 deleterious(0.02) possibly_damaging(0.724) TCGA-W3-AA21-06 17 61623301 61623301 G A KCNH6 3'UTR 0.51 TCGA-W3-AA21-06 17 6329008 6329008 C T AIPL1 Silent p.E309E 0.81 TCGA-W3-AA21-06 17 64125908 64125908 C T CEP112 Missense_Mutation p.D200N 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-W3-AA21-06 17 66873689 66873689 C T ABCA8 Silent p.R1350R 0.19 TCGA-W3-AA21-06 17 71364591 71364591 C T SDK2 Missense_Mutation p.D1708N 0.47 deleterious(0) probably_damaging(0.967) TCGA-W3-AA21-06 17 71394545 71394545 C T SDK2 Silent p.E1039E 0.20 TCGA-W3-AA21-06 17 72346584 72346584 G A KIF19 Missense_Mutation p.G420R 0.24 tolerated(0.21) benign(0.001) TCGA-W3-AA21-06 17 74076040 74076040 G C ZACN Missense_Mutation p.E113D 0.40 tolerated(1) benign(0) TCGA-W3-AA21-06 17 74383508 74383508 G A SPHK1 Silent p.K418K 0.24 TCGA-W3-AA21-06 17 7496129 7496129 G A FXR2 Missense_Mutation p.P538S 0.72 tolerated_low_confidence(1) benign(0.001) TCGA-W3-AA21-06 17 76087633 76087633 C T TNRC6C Silent p.S1302S 0.36 TCGA-W3-AA21-06 17 76415647 76415647 G A PGS1 Silent p.L524L 0.12 TCGA-W3-AA21-06 17 76482570 76482570 G A DNAH17 Silent p.I2265I 0.43 TCGA-W3-AA21-06 17 78073651 78073651 C T CCDC40 3'UTR 0.24 TCGA-W3-AA21-06 18 19997225 19997225 C T CTAGE1 Missense_Mutation p.E184K 0.39 tolerated(0.06) possibly_damaging(0.775) TCGA-W3-AA21-06 18 24436436 24436436 G A AQP4 Silent p.P237P 0.29 TCGA-W3-AA21-06 18 28723698 28723698 G A DSC1 Silent p.F332F 0.41 TCGA-W3-AA21-06 18 29052385 29052385 A G DSG3 Missense_Mutation p.K679R 0.33 tolerated(0.76) benign(0.263) TCGA-W3-AA21-06 18 321755 321755 C T COLEC12 Missense_Mutation p.E706K 0.45 deleterious(0) possibly_damaging(0.738) TCGA-W3-AA21-06 18 34298061 34298061 C T FHOD3 Missense_Mutation p.R759W 0.29 deleterious(0) probably_damaging(0.997) TCGA-W3-AA21-06 18 346471 346471 G A COLEC12 Missense_Mutation p.S384F 0.35 tolerated(0.7) possibly_damaging(0.452) TCGA-W3-AA21-06 18 47803574 47803574 G A MBD1 Silent p.S37S 0.26 TCGA-W3-AA21-06 18 55287843 55287843 C T NARS Silent p.T17T 0.37 TCGA-W3-AA21-06 18 56247083 56247083 C T ALPK2 Missense_Mutation p.E309K 0.40 deleterious(0.02) benign(0.434) TCGA-W3-AA21-06 18 60036692 60036692 C T TNFRSF11A Silent p.S514S 0.36 TCGA-W3-AA21-06 18 61379845 61379845 C T SERPINB11 Missense_Mutation p.S92F 0.40 deleterious(0) probably_damaging(0.963) TCGA-W3-AA21-06 18 66504023 66504023 G A CCDC102B Missense_Mutation p.R8Q 0.24 tolerated(0.1) benign(0.099) TCGA-W3-AA21-06 19 10794135 10794135 C T ILF3 Missense_Mutation p.P594S 0.37 tolerated(0.15) possibly_damaging(0.69) TCGA-W3-AA21-06 19 11333558 11333558 G A DOCK6 Silent p.S1031S 0.47 TCGA-W3-AA21-06 19 14574476 14574476 C A PKN1 Intron 0.14 TCGA-W3-AA21-06 19 14804272 14804272 C T ZNF333 5'UTR 0.11 TCGA-W3-AA21-06 19 15752245 15752245 C T CYP4F3 Missense_Mutation p.S7F 0.35 deleterious_low_confidence(0.04) benign(0.078) TCGA-W3-AA21-06 19 15770045 15770045 G A CYP4F3 Silent p.Q471Q 0.45 TCGA-W3-AA21-06 19 15989731 15989731 C T CYP4F2 Silent p.Q471Q 0.16 TCGA-W3-AA21-06 19 16034868 16034868 G A CYP4F11 Silent p.A224A 0.57 TCGA-W3-AA21-06 19 16268345 16268345 G A HSH2D 3'Flank 0.30 TCGA-W3-AA21-06 19 16925885 16925885 C T NWD1 3'UTR 0.32 TCGA-W3-AA21-06 19 1783246 1783246 G A ATP8B3 Silent p.P1228P 0.76 TCGA-W3-AA21-06 19 22154679 22154679 C T ZNF208 Missense_Mutation p.G1053R 0.45 deleterious(0.04) possibly_damaging(0.593) TCGA-W3-AA21-06 19 22364016 22364016 G A ZNF676 Missense_Mutation p.S168F 0.47 tolerated(0.36) possibly_damaging(0.598) TCGA-W3-AA21-06 19 22939910 22939910 A T ZNF99 3'Flank 0.38 TCGA-W3-AA21-06 19 22940301 22940301 G C ZNF99 Missense_Mutation p.L804V 0.58 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 19 23844973 23844973 C T ZNF675 Missense_Mutation p.E57K 0.50 tolerated(0.07) benign(0.003) TCGA-W3-AA21-06 19 36216443 36216443 C A KMT2B Missense_Mutation p.P1236T 0.09 benign(0.054) TCGA-W3-AA21-06 19 362187 362187 G A THEG 3'UTR 0.53 TCGA-W3-AA21-06 19 38014344 38014344 G A ZNF793 Translation_Start_Site p.M1? 0.26 tolerated(0.13) possibly_damaging(0.878) TCGA-W3-AA21-06 19 38973702 38973702 C T RYR1 Silent p.F1552F 0.23 TCGA-W3-AA21-06 19 3905627 3905627 G A ATCAY Missense_Mutation p.G111E 0.54 tolerated(0.25) benign(0.042) TCGA-W3-AA21-06 19 39443286 39443286 G A FBXO17 Intron 0.24 TCGA-W3-AA21-06 19 41063024 41063024 C T SPTBN4 Silent p.I1795I 0.63 TCGA-W3-AA21-06 19 41125322 41125322 C T LTBP4 Silent p.F1113F 0.25 TCGA-W3-AA21-06 19 42213861 42213861 C T CEA Silent p.I109I 0.43 TCGA-W3-AA21-06 19 42260770 42260770 C T CEACAM6 Silent p.I109I 0.08 TCGA-W3-AA21-06 19 43031290 43031290 G A CEACAM1 Silent p.I109I 0.10 TCGA-W3-AA21-06 19 44152914 44152914 G A PLAUR 3'UTR 0.33 TCGA-W3-AA21-06 19 44536178 44536178 C T ZNF222 Silent p.F157F 0.57 TCGA-W3-AA21-06 19 44934609 44934609 A G ZNF229 Missense_Mutation p.L116S 0.55 deleterious(0.02) benign(0.424) TCGA-W3-AA21-06 19 4538477 4538477 C T LRG1 Silent p.G173G 0.37 TCGA-W3-AA21-06 19 46815862 46815862 G A HIF3A Missense_Mutation p.G326E 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-W3-AA21-06 19 47195243 47195243 C T PRKD2 Splice_Site p.X526_splice 0.31 TCGA-W3-AA21-06 19 49173862 49173862 C T NTN5 Missense_Mutation p.G128S 0.36 tolerated(0.42) benign(0.045) TCGA-W3-AA21-06 19 49656839 49656839 C T HRC Silent p.R552R 0.20 TCGA-W3-AA21-06 19 51983913 51983913 A G CEACAM18 Missense_Mutation p.T188A 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-W3-AA21-06 19 52000614 52000614 G A SIGLEC12 Silent p.I497I 0.37 TCGA-W3-AA21-06 19 52090830 52090830 G A ZNF175 Missense_Mutation p.E416K 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-W3-AA21-06 19 53770254 53770254 G A VN1R4 Missense_Mutation p.S222F 0.54 deleterious(0.03) benign(0.333) TCGA-W3-AA21-06 19 54214303 54214303 G A MIR524 RNA 0.28 TCGA-W3-AA21-06 19 54653317 54653317 C T CNOT3 Missense_Mutation p.P477S 0.56 tolerated(0.11) possibly_damaging(0.641) TCGA-W3-AA21-06 19 54848763 54848763 C T LILRA4 Missense_Mutation p.R287H 0.22 tolerated(0.5) benign(0.059) TCGA-W3-AA21-06 19 55142963 55142963 A G LILRB1 Missense_Mutation p.K28R 0.20 deleterious(0.03) benign(0.057) TCGA-W3-AA21-06 19 55329826 55329826 G A KIR3DL1 Missense_Mutation p.G43R 0.75 tolerated(0.51) possibly_damaging(0.767) TCGA-W3-AA21-06 19 55591890 55591890 G A EPS8L1 Intron 0.53 TCGA-W3-AA21-06 19 55668984 55668984 G A TNNI3 5'UTR 0.57 TCGA-W3-AA21-06 19 56244875 56244875 G A NLRP9 Nonsense_Mutation p.Q108* 0.20 TCGA-W3-AA21-06 19 57932798 57932798 C T ZNF17 Silent p.V646V 0.55 TCGA-W3-AA21-06 19 5867503 5867503 G A FUT5 Silent p.I78I 0.33 TCGA-W3-AA21-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.30 deleterious(0) possibly_damaging(0.891) TCGA-W3-AA21-06 19 6187679 6187679 G A ACSBG2 Missense_Mutation p.G584S 0.45 tolerated(0.91) benign(0.002) TCGA-W3-AA21-06 19 6754413 6754413 C T SH2D3A Missense_Mutation p.G374E 0.39 tolerated(0.09) probably_damaging(0.979) TCGA-W3-AA21-06 19 6921758 6921758 C T EMR1 Missense_Mutation p.S552F 0.23 tolerated(0.17) possibly_damaging(0.521) TCGA-W3-AA21-06 19 7267774 7267774 G A INSR Silent p.F78F 0.50 TCGA-W3-AA21-06 19 9068901 9068901 C T MUC16 Missense_Mutation p.G6182E 0.33 unknown(0) TCGA-W3-AA21-06 19 9077550 9077550 C T MUC16 Missense_Mutation p.G3299E 0.55 unknown(0) TCGA-W3-AA21-06 19 9297135 9297135 G A OR7D2 Silent p.R226R 0.52 TCGA-W3-AA21-06 19 9491860 9491860 G A ZNF177 Missense_Mutation p.E285K 0.44 tolerated(0.07) probably_damaging(0.994) TCGA-W3-AA21-06 19 9524122 9524122 T A ZNF266 Missense_Mutation p.K493N 0.33 deleterious(0.01) possibly_damaging(0.491) TCGA-W3-AA21-06 19 9801039 9801039 C T ZNF812 Silent p.L380L 0.32 TCGA-W3-AA21-06 19 9801820 9801820 C T ZNF812 Missense_Mutation p.G120E 0.33 tolerated(0.12) possibly_damaging(0.798) TCGA-W3-AA21-06 1 100613836 100613836 G A TRMT13 Missense_Mutation p.D402N 0.41 tolerated(0.24) benign(0.094) TCGA-W3-AA21-06 1 114640462 114640462 C T SYT6 Missense_Mutation p.G383R 0.08 deleterious(0) probably_damaging(0.999) TCGA-W3-AA21-06 1 115829173 115829173 G A NGF Missense_Mutation p.L82F 0.50 tolerated(0.94) probably_damaging(0.999) TCGA-W3-AA21-06 1 12364632 12364632 G A VPS13D Missense_Mutation p.E2096K 0.59 benign(0.001) TCGA-W3-AA21-06 1 12884881 12884881 C T PRAMEF11 Silent p.R410R 0.36 TCGA-W3-AA21-06 1 13001086 13001086 C T PRAMEF6 Silent p.L199L 0.05 TCGA-W3-AA21-06 1 1322640 1322640 G A CCNL2 Missense_Mutation p.H512Y 0.38 tolerated_low_confidence(0.3) possibly_damaging(0.608) TCGA-W3-AA21-06 1 14099585 14099585 C T PRDM2 Missense_Mutation p.S175F 0.19 benign(0.407) TCGA-W3-AA21-06 1 147096605 147096605 G A BCL9 Missense_Mutation p.G1376S 0.22 deleterious(0.02) possibly_damaging(0.612) TCGA-W3-AA21-06 1 151239759 151239759 C T PSMD4 Silent p.S358S 0.26 TCGA-W3-AA21-06 1 151278738 151278738 G A PI4KB Silent p.S440S 0.20 TCGA-W3-AA21-06 1 152060593 152060593 G A TCHHL1 Silent p.L9L 0.21 TCGA-W3-AA21-06 1 152282121 152282121 G A FLG Silent p.H1747H 0.27 TCGA-W3-AA21-06 1 152282210 152282210 G A FLG Nonsense_Mutation p.Q1718* 0.28 TCGA-W3-AA21-06 1 152286131 152286131 C T FLG Missense_Mutation p.D411N 0.29 benign(0.36) TCGA-W3-AA21-06 1 153362963 153362963 G A S100A8 Missense_Mutation p.H17Y 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 1 153507824 153507824 G C S100A6 5'UTR 0.09 TCGA-W3-AA21-06 1 153741413 153741413 C T INTS3 Silent p.I763I 0.23 TCGA-W3-AA21-06 1 153903215 153903215 G A DENND4B Silent p.L1411L 0.35 TCGA-W3-AA21-06 1 154685944 154685944 G A KCNN3 Missense_Mutation p.S632F 0.30 deleterious(0) possibly_damaging(0.667) TCGA-W3-AA21-06 1 156883669 156883669 G A PEAR1 Silent p.G913G 0.37 TCGA-W3-AA21-06 1 157559110 157559110 C T FCRL4 Missense_Mutation p.G64E 0.30 tolerated(0.83) benign(0.003) TCGA-W3-AA21-06 1 158151370 158151370 G A CD1D Missense_Mutation p.D63N 0.35 tolerated(0.11) benign(0.022) TCGA-W3-AA21-06 1 158301239 158301239 T G CD1B 5'UTR 0.11 TCGA-W3-AA21-06 1 158449763 158449763 C T OR10R2 Silent p.F32F 0.30 TCGA-W3-AA21-06 1 158517788 158517788 G A OR6Y1 Silent p.F36F 0.28 TCGA-W3-AA21-06 1 158817657 158817657 C G MNDA Missense_Mutation p.T376R 0.24 tolerated(0.39) benign(0.2) TCGA-W3-AA21-06 1 159558248 159558248 G A APCS Missense_Mutation p.G141D 0.25 deleterious(0.02) possibly_damaging(0.602) TCGA-W3-AA21-06 1 159779444 159779444 G A FCRL6 Missense_Mutation p.R286K 0.25 tolerated(0.83) benign(0.007) TCGA-W3-AA21-06 1 16352715 16352715 C G CLCNKA Silent p.T157T 0.42 TCGA-W3-AA21-06 1 167097729 167097729 C T DUSP27 Missense_Mutation p.R1121W 0.22 deleterious(0.01) benign(0.043) TCGA-W3-AA21-06 1 167097832 167097832 G A DUSP27 Missense_Mutation p.R1155K 0.32 deleterious(0.03) benign(0.18) TCGA-W3-AA21-06 1 171173137 171173137 G A FMO2 Nonsense_Mutation p.W254* 0.29 TCGA-W3-AA21-06 1 173526622 173526622 G A SLC9C2 Missense_Mutation p.P358S 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-W3-AA21-06 1 173556890 173556890 G A SLC9C2 Missense_Mutation p.S146L 0.29 tolerated(0.71) benign(0.022) TCGA-W3-AA21-06 1 175331833 175331833 C A TNR Missense_Mutation p.E940D 0.28 deleterious(0.02) possibly_damaging(0.901) TCGA-W3-AA21-06 1 175375530 175375530 G A TNR Silent p.D107D 0.35 TCGA-W3-AA21-06 1 176668595 176668595 C T PAPPA2 Silent p.L1036L 0.25 TCGA-W3-AA21-06 1 176811609 176811609 C T PAPPA2 3'UTR 0.18 TCGA-W3-AA21-06 1 176905316 176905316 C T ASTN1 Intron 0.64 TCGA-W3-AA21-06 1 179520247 179520247 C T NPHS2 3'UTR 0.27 TCGA-W3-AA21-06 1 179528846 179528846 G A NPHS2 Missense_Mutation p.R168C 0.21 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 1 181702860 181702860 C T CACNA1E Missense_Mutation p.P1079L 0.22 deleterious(0) possibly_damaging(0.713) TCGA-W3-AA21-06 1 182026114 182026114 G A ZNF648 Silent p.F344F 0.27 TCGA-W3-AA21-06 1 185985244 185985244 C T HMCN1 Silent p.I1688I 0.40 TCGA-W3-AA21-06 1 186022137 186022137 G A HMCN1 Missense_Mutation p.G2211R 0.65 benign(0.057) TCGA-W3-AA21-06 1 186022138 186022138 G T HMCN1 Missense_Mutation p.G2211V 0.66 possibly_damaging(0.891) TCGA-W3-AA21-06 1 192312124 192312124 A T RGS21 5'UTR 0.23 TCGA-W3-AA21-06 1 19500026 19500026 G A UBR4 Silent p.S1024S 0.30 TCGA-W3-AA21-06 1 197024874 197024874 C T F13B Missense_Mutation p.G442E 0.28 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 1 197404099 197404099 G A CRB1 Missense_Mutation p.E1036K 0.31 tolerated(0.14) benign(0.002) TCGA-W3-AA21-06 1 197881648 197881648 C T LHX9 5'Flank 0.63 TCGA-W3-AA21-06 1 201380628 201380628 G A TNNI1 Missense_Mutation p.R105C 0.36 deleterious(0) probably_damaging(0.949) TCGA-W3-AA21-06 1 20305309 20305309 C T PLA2G2A 5'UTR 0.41 TCGA-W3-AA21-06 1 203317133 203317133 G A FMOD Missense_Mutation p.A89V 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 1 20517364 20517364 C T UBXN10 Missense_Mutation p.P104S 0.45 tolerated(0.07) benign(0.066) TCGA-W3-AA21-06 1 206225045 206225045 G A AVPR1B Nonsense_Mutation p.W202* 0.33 TCGA-W3-AA21-06 1 207087140 207087140 C T FAIM3 Missense_Mutation p.G113R 0.15 deleterious(0) probably_damaging(0.985) TCGA-W3-AA21-06 1 207789974 207789974 C T CR1 Missense_Mutation p.P2239L 0.26 tolerated(0.18) benign(0.014) TCGA-W3-AA21-06 1 208257896 208257896 C T PLXNA2 Silent p.E709E 0.07 TCGA-W3-AA21-06 1 223396956 223396956 G A SUSD4 Missense_Mutation p.S360F 0.30 tolerated(0.1) probably_damaging(0.99) TCGA-W3-AA21-06 1 227923098 227923098 C T JMJD4 Silent p.P5P 0.59 TCGA-W3-AA21-06 1 229730625 229730625 G A TAF5L Silent p.L397L 0.32 TCGA-W3-AA21-06 1 230883269 230883269 G A CAPN9 Silent p.G9G 0.30 TCGA-W3-AA21-06 1 233150408 233150408 T A PCNXL2 Intron 0.21 TCGA-W3-AA21-06 1 234367319 234367319 C T SLC35F3 Missense_Mutation p.S147F 0.31 tolerated(0.06) benign(0.33) TCGA-W3-AA21-06 1 23724045 23724045 G A TCEA3 Silent p.I219I 0.39 TCGA-W3-AA21-06 1 23842931 23842931 G A E2F2 Missense_Mutation p.S314F 0.37 tolerated(0.06) benign(0.082) TCGA-W3-AA21-06 1 247013026 247013026 G A AHCTF1 Silent p.S2103S 0.32 TCGA-W3-AA21-06 1 247013027 247013027 G A AHCTF1 Missense_Mutation p.S2103F 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-W3-AA21-06 1 247163341 247163341 G A ZNF695 Silent p.F13F 0.16 TCGA-W3-AA21-06 1 247712378 247712378 G A GCSAML 5'Flank 0.27 TCGA-W3-AA21-06 1 247978278 247978278 C G OR14A16 Missense_Mutation p.G252R 0.31 deleterious(0) probably_damaging(0.995) TCGA-W3-AA21-06 1 248201853 248201853 G A OR2L2 Missense_Mutation p.G95E 0.31 deleterious(0.01) benign(0.265) TCGA-W3-AA21-06 1 248436982 248436982 G A OR2T33 Silent p.L45L 0.25 TCGA-W3-AA21-06 1 248458609 248458609 G A OR2T12 Missense_Mutation p.S91F 0.52 deleterious(0) probably_damaging(0.966) TCGA-W3-AA21-06 1 249142461 249142461 C T ZNF672 Missense_Mutation p.R330W 0.21 deleterious(0.03) benign(0.019) TCGA-W3-AA21-06 1 26752963 26752963 G A LIN28A 3'UTR 0.18 TCGA-W3-AA21-06 1 27874538 27874538 G A AHDC1 Silent p.F1363F 0.43 TCGA-W3-AA21-06 1 29637279 29637279 C T PTPRU Silent p.F958F 0.41 TCGA-W3-AA21-06 1 32196540 32196540 G A BAI2 Missense_Mutation p.S1414F 0.33 tolerated(0.05) possibly_damaging(0.646) TCGA-W3-AA21-06 1 34401446 34401446 G T CSMD2 Missense_Mutation p.F169L 0.51 deleterious(0.01) benign(0.403) TCGA-W3-AA21-06 1 34401469 34401469 G A CSMD2 Missense_Mutation p.R162C 0.41 deleterious(0) probably_damaging(0.988) TCGA-W3-AA21-06 1 35847216 35847216 C T ZMYM4 Missense_Mutation p.R476C 0.43 deleterious(0) possibly_damaging(0.582) TCGA-W3-AA21-06 1 53546499 53546499 C - PODN Frame_Shift_Del p.A587Pfs*33 0.41 TCGA-W3-AA21-06 1 54665842 54665842 C T MRPL37 5'UTR 0.44 TCGA-W3-AA21-06 1 55145038 55145038 G A MROH7 Missense_Mutation p.E718K 0.39 deleterious(0.01) possibly_damaging(0.801) TCGA-W3-AA21-06 1 62675517 62675517 C T L1TD1 Silent p.F357F 0.47 TCGA-W3-AA21-06 1 65305458 65305458 C G JAK1 Missense_Mutation p.E890D 0.60 tolerated(0.05) probably_damaging(0.998) TCGA-W3-AA21-06 1 66075678 66075678 C T LEPR Missense_Mutation p.P601S 0.45 tolerated(0.72) benign(0.015) TCGA-W3-AA21-06 1 71873079 71873079 C T NEGR1 3'UTR 0.45 TCGA-W3-AA21-06 1 78429324 78429324 G A FUBP1 Missense_Mutation p.P373L 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-W3-AA21-06 1 78429325 78429325 G A FUBP1 Missense_Mutation p.P373S 0.34 tolerated(0.1) possibly_damaging(0.742) TCGA-W3-AA21-06 1 78560645 78560645 G A GIPC2 Missense_Mutation p.D146N 0.37 deleterious(0.02) possibly_damaging(0.493) TCGA-W3-AA21-06 1 86947916 86947916 G A CLCA1 Missense_Mutation p.V196I 0.32 tolerated(0.34) benign(0.029) TCGA-W3-AA21-06 1 888573 888573 G A NOC2L Silent p.F328F 0.42 TCGA-W3-AA21-06 1 91403151 91403151 G A ZNF644 Silent p.I1193I 0.39 TCGA-W3-AA21-06 1 94639439 94639439 G A ARHGAP29 Missense_Mutation p.P1258S 0.35 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-W3-AA21-06 20 18143519 18143519 C T CSRP2BP Missense_Mutation p.S534F 0.30 tolerated(0.1) benign(0.013) TCGA-W3-AA21-06 20 2464072 2464073 - GGTGTCTG ZNF343 Frame_Shift_Ins p.Q512Pfs*102 0.08 TCGA-W3-AA21-06 20 25255330 25255330 C T PYGB Missense_Mutation p.P211S 0.24 tolerated(0.59) benign(0.008) TCGA-W3-AA21-06 20 30671780 30671780 G A HCK Missense_Mutation p.G206R 0.22 deleterious(0) probably_damaging(0.987) TCGA-W3-AA21-06 20 30671781 30671781 G A HCK Missense_Mutation p.G206E 0.21 deleterious(0) probably_damaging(0.974) TCGA-W3-AA21-06 20 31815387 31815387 A G BPIFA3 Silent p.Q243Q 0.23 TCGA-W3-AA21-06 20 33732788 33732788 G A EDEM2 Silent p.T84T 0.29 TCGA-W3-AA21-06 20 33732789 33732789 G A EDEM2 Missense_Mutation p.T84I 0.29 deleterious(0) probably_damaging(0.984) TCGA-W3-AA21-06 20 372102 372102 C T TRIB3 Missense_Mutation p.P155S 0.60 tolerated(0.37) probably_damaging(0.954) TCGA-W3-AA21-06 20 39990780 39990780 G A EMILIN3 Missense_Mutation p.L477F 0.41 deleterious(0) probably_damaging(0.974) TCGA-W3-AA21-06 20 42355268 42355268 G A GTSF1L Nonsense_Mutation p.Q23* 0.28 TCGA-W3-AA21-06 20 43738604 43738604 C T WFDC5 3'UTR 0.21 TCGA-W3-AA21-06 20 44313369 44313369 C T WFDC10B 3'UTR 0.35 TCGA-W3-AA21-06 20 48522855 48522855 C A SPATA2 Missense_Mutation p.K288N 0.25 deleterious(0) possibly_damaging(0.474) TCGA-W3-AA21-06 20 49626741 49626741 C T KCNG1 Silent p.R45R 0.66 TCGA-W3-AA21-06 20 50701678 50701678 G A ZFP64 Silent p.T452T 0.25 TCGA-W3-AA21-06 20 9400488 9400488 G A PLCB4 Missense_Mutation p.D684N 0.58 deleterious(0.04) probably_damaging(0.997) TCGA-W3-AA21-06 21 10920123 10920123 G A TPTE Silent p.T377T 0.15 TCGA-W3-AA21-06 21 11039223 11039223 C T BAGE2 RNA 0.05 TCGA-W3-AA21-06 21 15537625 15537625 G A LIPI Missense_Mutation p.P295S 0.38 deleterious(0.02) possibly_damaging(0.586) TCGA-W3-AA21-06 21 15558363 15558363 G A LIPI Missense_Mutation p.H175Y 0.35 tolerated(0.39) probably_damaging(0.986) TCGA-W3-AA21-06 21 30308931 30308931 G A LTN1 Missense_Mutation p.P1570L 0.41 deleterious(0) benign(0.348) TCGA-W3-AA21-06 21 39671917 39671917 G A KCNJ15 Missense_Mutation p.S245N 0.49 tolerated(1) possibly_damaging(0.881) TCGA-W3-AA21-06 21 41711310 41711310 C T DSCAM Missense_Mutation p.E415K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-W3-AA21-06 21 45483598 45483598 C T TRAPPC10 Missense_Mutation p.P324S 0.48 tolerated(0.05) possibly_damaging(0.904) TCGA-W3-AA21-06 22 17117936 17117936 G A TPTEP1 RNA 0.53 TCGA-W3-AA21-06 22 18609444 18609444 G A TUBA8 Silent p.Q233Q 0.41 TCGA-W3-AA21-06 22 22453210 22453210 G A IGLV8-61 Missense_Mutation p.G19R 0.40 deleterious(0.04) possibly_damaging(0.861) TCGA-W3-AA21-06 22 23214075 23214075 G A IGLV4-3 Missense_Mutation p.G78R 0.44 deleterious(0.01) probably_damaging(1) TCGA-W3-AA21-06 22 30733151 30733151 G A SF3A1 Missense_Mutation p.P657L 0.38 tolerated(0.35) probably_damaging(0.981) TCGA-W3-AA21-06 22 31284233 31284233 G A OSBP2 Missense_Mutation p.E442K 0.44 deleterious(0.02) possibly_damaging(0.901) TCGA-W3-AA21-06 22 36624288 36624288 A G APOL2 Missense_Mutation p.L59P 0.45 deleterious(0) probably_damaging(0.987) TCGA-W3-AA21-06 22 45813677 45813677 T C RIBC2 Missense_Mutation p.V131A 0.48 tolerated(0.44) benign(0.002) TCGA-W3-AA21-06 22 50278436 50278436 C T ZBED4 Missense_Mutation p.P376S 0.49 deleterious(0) benign(0.232) TCGA-W3-AA21-06 2 102836401 102836401 G A IL1RL2 Silent p.V305V 0.33 TCGA-W3-AA21-06 2 103068603 103068603 G A IL18RAP Missense_Mutation p.E588K 0.48 tolerated(0.23) benign(0.003) TCGA-W3-AA21-06 2 111425155 111425155 A G BUB1 Missense_Mutation p.S250P 0.39 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 2 112705122 112705122 C T MERTK Silent p.S245S 0.44 TCGA-W3-AA21-06 2 113765541 113765541 G A IL36A Missense_Mutation p.E133K 0.50 tolerated(1) benign(0.015) TCGA-W3-AA21-06 2 125261995 125261995 C T CNTNAP5 Nonsense_Mutation p.R396* 0.29 TCGA-W3-AA21-06 2 133174756 133174756 G A GPR39 Silent p.G47G 0.29 TCGA-W3-AA21-06 2 135625210 135625210 G A ACMSD Missense_Mutation p.R183Q 0.52 tolerated(0.05) benign(0.432) TCGA-W3-AA21-06 2 136566557 136566557 G A LCT Silent p.I1120I 0.52 TCGA-W3-AA21-06 2 138163282 138163282 C T THSD7B Missense_Mutation p.P867L 0.38 deleterious(0.04) possibly_damaging(0.851) TCGA-W3-AA21-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.24 tolerated(0.95) unknown(0) TCGA-W3-AA21-06 2 145156515 145156515 G C ZEB2 Missense_Mutation p.L747V 0.27 tolerated(0.29) benign(0.304) TCGA-W3-AA21-06 2 166848874 166848874 C T SCN1A Silent p.V1637V 0.52 TCGA-W3-AA21-06 2 169781285 169781285 C T ABCB11 Missense_Mutation p.G1216E 0.62 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 2 170592327 170592327 C T KLHL23 Missense_Mutation p.S268F 0.25 tolerated(0.13) benign(0.122) TCGA-W3-AA21-06 2 177054107 177054107 C T HOXD1 Missense_Mutation p.S193F 0.39 deleterious(0) probably_damaging(0.934) TCGA-W3-AA21-06 2 179423281 179423281 C T TTN Missense_Mutation p.D28969N 0.53 TCGA-W3-AA21-06 2 179588634 179588634 C T TTN Missense_Mutation p.A7118T 0.19 TCGA-W3-AA21-06 2 179616247 179616247 C T TTN Intron 0.29 TCGA-W3-AA21-06 2 179664290 179664290 G A TTN Nonsense_Mutation p.Q280* 0.17 TCGA-W3-AA21-06 2 192012846 192012846 C T STAT4 Missense_Mutation p.M28I 0.68 deleterious(0) probably_damaging(0.992) TCGA-W3-AA21-06 2 207172217 207172217 C T ZDBF2 Nonsense_Mutation p.Q989* 0.21 TCGA-W3-AA21-06 2 207176013 207176013 C T ZDBF2 Missense_Mutation p.S2254F 0.43 tolerated(0.14) benign(0.032) TCGA-W3-AA21-06 2 207412188 207412188 C T ADAM23 Silent p.T252T 0.52 TCGA-W3-AA21-06 2 219346953 219346953 G A USP37 Missense_Mutation p.L559F 0.66 deleterious(0.01) probably_damaging(1) TCGA-W3-AA21-06 2 220356980 220356980 C T SPEG Silent p.P3203P 0.47 TCGA-W3-AA21-06 2 227979385 227979385 C T COL4A4 Missense_Mutation p.G173R 0.26 probably_damaging(1) TCGA-W3-AA21-06 2 233272639 233272639 G A ALPPL2 Nonsense_Mutation p.W187* 0.33 TCGA-W3-AA21-06 2 241656723 241656723 G A KIF1A 3'UTR 0.45 TCGA-W3-AA21-06 2 241726727 241726727 C T KIF1A Missense_Mutation p.E124K 0.49 tolerated(0.37) benign(0.29) TCGA-W3-AA21-06 2 26697462 26697462 G A OTOF Silent p.F1069F 0.29 TCGA-W3-AA21-06 2 26703765 26703765 G A OTOF Silent p.S564S 0.47 TCGA-W3-AA21-06 2 27503075 27503075 G A DNAJC5G Missense_Mutation p.D188N 0.47 deleterious(0.02) benign(0.003) TCGA-W3-AA21-06 2 31754493 31754493 G A AL133247.2 Intron 0.14 TCGA-W3-AA21-06 2 51149794 51149794 A T NRXN1 Splice_Site p.X307_splice 0.19 TCGA-W3-AA21-06 2 70890507 70890507 G A ADD2 3'UTR 0.56 TCGA-W3-AA21-06 2 89309539 89309539 G A IGKV1-9 Silent p.I97I 0.25 TCGA-W3-AA21-06 2 89476610 89476610 C G IGKV2-24 Missense_Mutation p.R2T 0.33 deleterious(0.02) probably_damaging(1) TCGA-W3-AA21-06 3 100569525 100569525 C T ABI3BP Missense_Mutation p.E427K 0.42 tolerated(0.06) benign(0.292) TCGA-W3-AA21-06 3 102153973 102153973 T A ZPLD1 Missense_Mutation p.F5L 0.53 deleterious_low_confidence(0) benign(0.294) TCGA-W3-AA21-06 3 105258915 105258915 C T ALCAM Missense_Mutation p.P276L 0.40 deleterious(0) probably_damaging(0.955) TCGA-W3-AA21-06 3 108301899 108301899 C T KIAA1524 Silent p.Q94Q 0.39 TCGA-W3-AA21-06 3 108813847 108813847 A G MORC1 Silent p.F164F 0.50 TCGA-W3-AA21-06 3 113588429 113588429 C T GRAMD1C Silent p.L84L 0.42 TCGA-W3-AA21-06 3 118931359 118931359 G A B4GALT4 3'UTR 0.46 TCGA-W3-AA21-06 3 119501600 119501600 G A NR1I2 5'UTR 0.37 TCGA-W3-AA21-06 3 121207724 121207724 C G POLQ Missense_Mutation p.G1352R 0.34 tolerated(0.54) benign(0.006) TCGA-W3-AA21-06 3 121345567 121345567 C T FBXO40 Missense_Mutation p.S647F 0.37 deleterious(0) probably_damaging(0.992) TCGA-W3-AA21-06 3 121646620 121646620 G A SLC15A2 Missense_Mutation p.M380I 0.33 tolerated(0.09) probably_damaging(0.98) TCGA-W3-AA21-06 3 124515504 124515504 C T ITGB5 Missense_Mutation p.R475K 0.32 tolerated(1) benign(0) TCGA-W3-AA21-06 3 142739529 142739529 C T U2SURP Missense_Mutation p.R243C 0.31 tolerated(0.05) possibly_damaging(0.551) TCGA-W3-AA21-06 3 147130447 147130447 T C ZIC1 Silent p.S375S 0.48 TCGA-W3-AA21-06 3 167039933 167039933 C T ZBBX Missense_Mutation p.E319K 0.40 deleterious(0) probably_damaging(0.952) TCGA-W3-AA21-06 3 167543088 167543088 G A SERPINI1 Missense_Mutation p.G404R 0.35 tolerated(0.13) possibly_damaging(0.571) TCGA-W3-AA21-06 3 170716105 170716105 C T SLC2A2 Silent p.P417P 0.40 TCGA-W3-AA21-06 3 17469964 17469964 C T TBC1D5 Missense_Mutation p.E49K 0.58 tolerated_low_confidence(0.21) benign(0.007) TCGA-W3-AA21-06 3 184041252 184041252 C T EIF4G1 Silent p.I722I 0.41 TCGA-W3-AA21-06 3 189713187 189713187 G A LEPREL1 Silent p.F175F 0.45 TCGA-W3-AA21-06 3 194081554 194081554 G A LRRC15 Silent p.F79F 0.31 TCGA-W3-AA21-06 3 36874804 36874804 G A TRANK1 Silent p.I2046I 0.78 TCGA-W3-AA21-06 3 38565798 38565798 T C EXOG Missense_Mutation p.L351P 0.92 tolerated(0.12) probably_damaging(0.972) TCGA-W3-AA21-06 3 45804521 45804521 C T SLC6A20 Silent p.T449T 0.34 TCGA-W3-AA21-06 3 45988733 45988733 C T CXCR6 Missense_Mutation p.R254C 0.32 deleterious(0.01) probably_damaging(0.911) TCGA-W3-AA21-06 3 47891189 47891189 C T DHX30 Silent p.F1087F 0.40 TCGA-W3-AA21-06 3 48423210 48423210 C T FBXW12 Nonsense_Mutation p.Q336* 0.31 TCGA-W3-AA21-06 3 49866373 49866373 G A TRAIP 3'UTR 0.38 TCGA-W3-AA21-06 3 51266142 51266142 C A DOCK3 Silent p.P566P 0.27 TCGA-W3-AA21-06 3 51457887 51457887 G T VPRBP Missense_Mutation p.P417H 0.46 tolerated(0.12) benign(0.039) TCGA-W3-AA21-06 3 51697239 51697239 C T RAD54L2 Missense_Mutation p.P1403S 0.46 tolerated_low_confidence(0.66) benign(0.026) TCGA-W3-AA21-06 3 51749095 51749095 G A GRM2 Missense_Mutation p.D436N 0.41 tolerated(0.33) benign(0.049) TCGA-W3-AA21-06 3 51982360 51982360 G A PARP3 Missense_Mutation p.G496D 0.37 deleterious(0.03) probably_damaging(0.926) TCGA-W3-AA21-06 3 54661857 54661857 G A CACNA2D3 Missense_Mutation p.G336E 0.53 deleterious(0) probably_damaging(0.997) TCGA-W3-AA21-06 3 54959054 54959054 G A LRTM1 Missense_Mutation p.P66S 0.30 tolerated(0.76) benign(0.038) TCGA-W3-AA21-06 3 57494906 57494906 G A DNAH12 Missense_Mutation p.S168L 0.34 tolerated(0.25) benign(0) TCGA-W3-AA21-06 3 79639073 79639073 C T ROBO1 5'UTR 0.31 TCGA-W3-AA21-06 3 9743545 9743545 G T MTMR14 Missense_Mutation p.S614I 0.81 deleterious(0.04) probably_damaging(0.974) TCGA-W3-AA21-06 3 97731228 97731228 G A GABRR3 RNA 0.32 TCGA-W3-AA21-06 3 99513345 99513345 G A COL8A1 Silent p.G200G 0.57 TCGA-W3-AA21-06 4 100451107 100451107 G A C4orf17 Missense_Mutation p.E180K 0.48 deleterious(0) probably_damaging(0.993) TCGA-W3-AA21-06 4 106863545 106863545 G A NPNT Missense_Mutation p.G312E 0.41 deleterious(0.03) probably_damaging(0.954) TCGA-W3-AA21-06 4 111398002 111398002 C T ENPEP Silent p.L144L 0.38 TCGA-W3-AA21-06 4 115997855 115997855 C T NDST4 Missense_Mutation p.G113E 0.51 deleterious(0.01) possibly_damaging(0.677) TCGA-W3-AA21-06 4 118005333 118005333 A T TRAM1L1 3'UTR 0.32 TCGA-W3-AA21-06 4 119978801 119978801 G A SYNPO2 Silent p.R1166R 0.38 TCGA-W3-AA21-06 4 126369711 126369711 C T FAT4 Missense_Mutation p.H2514Y 0.42 benign(0.428) TCGA-W3-AA21-06 4 126412676 126412676 G A FAT4 Missense_Mutation p.G4900E 0.47 benign(0.05) TCGA-W3-AA21-06 4 129121743 129121743 C T LARP1B Silent p.F744F 0.39 TCGA-W3-AA21-06 4 138451819 138451819 G A PCDH18 Missense_Mutation p.S475L 0.41 tolerated(0.21) benign(0.026) TCGA-W3-AA21-06 4 141300281 141300281 C T SCOC Missense_Mutation p.S63F 0.37 deleterious(0) probably_damaging(0.991) TCGA-W3-AA21-06 4 155241754 155241754 C T DCHS2 Silent p.R1144R 0.48 TCGA-W3-AA21-06 4 155749077 155749077 C T RBM46 Missense_Mutation p.S487F 0.39 tolerated(0.08) benign(0.047) TCGA-W3-AA21-06 4 164394080 164394080 T A TKTL2 Missense_Mutation p.E269D 0.34 tolerated(0.8) benign(0.075) TCGA-W3-AA21-06 4 170398637 170398637 T A NEK1 Missense_Mutation p.L717F 0.25 tolerated(0.09) possibly_damaging(0.642) TCGA-W3-AA21-06 4 22749373 22749373 C T GBA3 Silent p.I247I 0.44 TCGA-W3-AA21-06 4 248529 248529 G A ZNF876P RNA 0.31 TCGA-W3-AA21-06 4 25030177 25030177 G A LGI2 Missense_Mutation p.S74L 0.79 deleterious(0.04) benign(0.001) TCGA-W3-AA21-06 4 36166586 36166586 G A ARAP2 Missense_Mutation p.P708L 0.56 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 4 40434670 40434670 G A RBM47 Nonsense_Mutation p.Q514* 0.44 TCGA-W3-AA21-06 4 55161371 55161371 G A PDGFRA Missense_Mutation p.E1068K 0.41 deleterious(0) possibly_damaging(0.773) TCGA-W3-AA21-06 4 57355644 57355644 C T SRP72 Missense_Mutation p.H439Y 0.49 tolerated(0.48) benign(0.005) TCGA-W3-AA21-06 4 69095234 69095234 C T TMPRSS11B Silent p.K229K 0.26 TCGA-W3-AA21-06 4 69203343 69203343 G A YTHDC1 Missense_Mutation p.R136W 0.45 deleterious_low_confidence(0) unknown(0) TCGA-W3-AA21-06 4 71509742 71509742 C T ENAM Missense_Mutation p.H867Y 0.29 tolerated(0.17) probably_damaging(0.988) TCGA-W3-AA21-06 4 79321919 79321919 C T FRAS1 Missense_Mutation p.S1336L 0.31 benign(0.222) TCGA-W3-AA21-06 4 80329271 80329271 G A GK2 Silent p.F28F 0.39 TCGA-W3-AA21-06 4 85752612 85752612 G A WDFY3 Silent p.T241T 0.32 TCGA-W3-AA21-06 4 88578214 88578214 G A DMP1 Missense_Mutation p.D29N 0.42 deleterious(0.01) benign(0.001) TCGA-W3-AA21-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.54 TCGA-W3-AA21-06 5 112769608 112769608 G A TSSK1B Missense_Mutation p.T310I 0.33 tolerated_low_confidence(0.07) benign(0.209) TCGA-W3-AA21-06 5 115323547 115323547 G A AQPEP Missense_Mutation p.G339E 0.50 deleterious(0) probably_damaging(0.982) TCGA-W3-AA21-06 5 118968483 118968483 C T FAM170A Silent p.S37S 0.33 TCGA-W3-AA21-06 5 122337645 122337645 C T SNX24 Missense_Mutation p.H130Y 0.60 deleterious(0) probably_damaging(0.986) TCGA-W3-AA21-06 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.25 TCGA-W3-AA21-06 5 137426770 137426770 C T WNT8A 3'UTR 0.23 TCGA-W3-AA21-06 5 13752359 13752359 C T DNAH5 Missense_Mutation p.E3638K 0.61 possibly_damaging(0.621) TCGA-W3-AA21-06 5 140187879 140187879 C T PCDHA4 Silent p.I369I 0.46 TCGA-W3-AA21-06 5 140235948 140235948 G A PCDHA10 Silent p.L105L 0.88 TCGA-W3-AA21-06 5 140474589 140474589 G A PCDHB2 Missense_Mutation p.G72E 0.40 tolerated_low_confidence(0.08) benign(0.043) TCGA-W3-AA21-06 5 140502641 140502641 C T PCDHB4 Missense_Mutation p.S354F 0.39 deleterious(0.01) benign(0.1) TCGA-W3-AA21-06 5 140537705 140537705 C T PCDHB17 3'UTR 0.41 TCGA-W3-AA21-06 5 140563282 140563282 C T PCDHB16 Missense_Mutation p.S383F 0.47 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-W3-AA21-06 5 140589149 140589149 G A PCDHB12 Missense_Mutation p.G224R 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.874) TCGA-W3-AA21-06 5 140595819 140595819 C T PCDHB13 Silent p.F708F 0.37 TCGA-W3-AA21-06 5 140710945 140710945 G A PCDHGA1 Missense_Mutation p.V232M 0.37 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-W3-AA21-06 5 145252390 145252390 C T GRXCR2 Missense_Mutation p.E48K 0.45 tolerated(0.27) possibly_damaging(0.658) TCGA-W3-AA21-06 5 145383624 145383624 G A SH3RF2 Missense_Mutation p.D218N 0.38 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 5 146997668 146997668 C T JAKMIP2 Missense_Mutation p.E718K 0.46 deleterious(0) benign(0.164) TCGA-W3-AA21-06 5 147693749 147693749 C T SPINK7 Silent p.I58I 0.39 TCGA-W3-AA21-06 5 149826527 149826527 C T RPS14 Splice_Site p.X50_splice 0.32 TCGA-W3-AA21-06 5 149914530 149914530 C T NDST1 Missense_Mutation p.H400Y 0.41 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 5 150646406 150646406 C T GM2A Missense_Mutation p.P120S 0.44 deleterious(0) probably_damaging(0.977) TCGA-W3-AA21-06 5 150928917 150928917 C A FAT2 Missense_Mutation p.Q1576H 0.17 probably_damaging(0.971) TCGA-W3-AA21-06 5 153190794 153190794 G A GRIA1 3'UTR 0.40 TCGA-W3-AA21-06 5 154282156 154282156 G A GEMIN5 Nonsense_Mutation p.Q937* 0.44 TCGA-W3-AA21-06 5 156672994 156672994 G A ITK Missense_Mutation p.D540N 0.35 deleterious(0) probably_damaging(0.997) TCGA-W3-AA21-06 5 161128522 161128522 C T GABRA6 Missense_Mutation p.H369Y 0.36 tolerated(0.69) benign(0.002) TCGA-W3-AA21-06 5 175722108 175722108 C T SIMC1 Missense_Mutation p.P69S 0.37 tolerated(0.08) benign(0.151) TCGA-W3-AA21-06 5 176301524 176301524 G A UNC5A Silent p.G445G 0.46 TCGA-W3-AA21-06 5 176759227 176759227 C T LMAN2 Missense_Mutation p.G311R 0.17 tolerated(0.29) probably_damaging(0.973) TCGA-W3-AA21-06 5 176932095 176932095 G A DOK3 Missense_Mutation p.S186F 0.47 tolerated(0.08) possibly_damaging(0.736) TCGA-W3-AA21-06 5 179564941 179564941 G A RASGEF1C Missense_Mutation p.P38S 0.24 deleterious(0) possibly_damaging(0.552) TCGA-W3-AA21-06 5 19483630 19483630 C T CDH18 Silent p.R554R 0.52 TCGA-W3-AA21-06 5 38923272 38923272 C T OSMR Nonsense_Mutation p.R596* 0.33 TCGA-W3-AA21-06 5 41155117 41155117 G A C6 Silent p.C686C 0.39 TCGA-W3-AA21-06 5 42699962 42699962 T G GHR Nonsense_Mutation p.L159* 0.38 TCGA-W3-AA21-06 5 45262220 45262220 C T HCN1 Missense_Mutation p.G826S 0.47 tolerated_low_confidence(0.33) benign(0.003) TCGA-W3-AA21-06 5 45262221 45262221 C T HCN1 Silent p.T825T 0.49 TCGA-W3-AA21-06 5 45462025 45462025 C T HCN1 Missense_Mutation p.D312N 0.46 tolerated(0.23) probably_damaging(0.996) TCGA-W3-AA21-06 5 45645563 45645563 G A HCN1 Silent p.I191I 0.42 TCGA-W3-AA21-06 5 71757087 71757087 C T ZNF366 Silent p.R79R 0.31 TCGA-W3-AA21-06 5 75866458 75866458 G A IQGAP2 Silent p.A119A 0.24 TCGA-W3-AA21-06 5 79029630 79029630 G A CMYA5 Missense_Mutation p.G1681E 0.51 benign(0.003) TCGA-W3-AA21-06 5 90669518 90669518 G A ARRDC3 Missense_Mutation p.P391S 0.32 deleterious(0) probably_damaging(0.989) TCGA-W3-AA21-06 6 109854549 109854549 G A AK9 Missense_Mutation p.R1159C 0.78 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 6 143081547 143081547 C T HIVEP2 Missense_Mutation p.D1960N 0.58 tolerated(0.3) benign(0.274) TCGA-W3-AA21-06 6 159262723 159262723 A G OSTCP1 RNA 0.78 TCGA-W3-AA21-06 6 159688895 159688895 G A FNDC1 Missense_Mutation p.D1836N 0.67 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 6 25770657 25770657 C T SLC17A4 Missense_Mutation p.P193S 0.56 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 6 27216980 27216980 C T PRSS16 Nonsense_Mutation p.Q147* 0.28 TCGA-W3-AA21-06 6 28253453 28253453 G T PGBD1 Missense_Mutation p.Q174H 0.60 deleterious_low_confidence(0.01) benign(0.365) TCGA-W3-AA21-06 6 28253454 28253454 C T PGBD1 Missense_Mutation p.R175C 0.60 deleterious_low_confidence(0.02) benign(0) TCGA-W3-AA21-06 6 28829614 28829614 G A XXbac-BPG308K3.6 RNA 0.74 TCGA-W3-AA21-06 6 29080091 29080091 C T OR2J3 Missense_Mutation p.R142C 0.61 deleterious(0.04) benign(0.031) TCGA-W3-AA21-06 6 30136086 30136086 G A TRIM15 Missense_Mutation p.E163K 0.11 tolerated(0.08) possibly_damaging(0.903) TCGA-W3-AA21-06 6 30919775 30919775 G A DPCR1 Silent p.E1178E 0.68 TCGA-W3-AA21-06 6 30920883 30920883 T C DPCR1 Missense_Mutation p.S1391P 0.37 deleterious(0) benign(0.06) TCGA-W3-AA21-06 6 31544541 31544541 C T TNF Intron 0.33 TCGA-W3-AA21-06 6 32011536 32011536 G A TNXB Silent p.F269F 0.30 TCGA-W3-AA21-06 6 32025984 32025984 C T TNXB Missense_Mutation p.R2559K 0.25 benign(0.288) TCGA-W3-AA21-06 6 32916634 32916634 G A HLA-DMA 3'UTR 0.26 TCGA-W3-AA21-06 6 36106517 36106517 G A MAPK13 Silent p.R267R 0.44 TCGA-W3-AA21-06 6 38913295 38913295 C T DNAH8 Silent p.I3803I 0.25 TCGA-W3-AA21-06 6 40360590 40360590 C T LRFN2 Missense_Mutation p.D488N 0.38 tolerated(0.14) possibly_damaging(0.683) TCGA-W3-AA21-06 6 41126465 41126465 G A TREM2 3'UTR 0.63 TCGA-W3-AA21-06 6 41197273 41197273 C T TREML4 Missense_Mutation p.P137S 0.53 tolerated(0.17) benign(0.387) TCGA-W3-AA21-06 6 43273468 43273468 G A CRIP3 3'UTR 0.50 TCGA-W3-AA21-06 6 43274248 43274248 G A CRIP3 Silent p.P112P 0.71 TCGA-W3-AA21-06 6 43416680 43416680 C T ABCC10 Silent p.L1341L 0.66 TCGA-W3-AA21-06 6 44144577 44144577 T A CAPN11 Missense_Mutation p.M360K 0.32 deleterious(0) possibly_damaging(0.908) TCGA-W3-AA21-06 6 51824689 51824689 G A PKHD1 Missense_Mutation p.L1963F 0.35 deleterious(0) probably_damaging(0.972) TCGA-W3-AA21-06 6 55223830 55223830 C T GFRAL Silent p.I282I 0.44 TCGA-W3-AA21-06 6 56362226 56362226 G A DST Missense_Mutation p.P4102L 0.41 probably_damaging(0.959) TCGA-W3-AA21-06 6 64004851 64004851 C T LGSN Missense_Mutation p.E44K 0.58 tolerated_low_confidence(0.9) benign(0.058) TCGA-W3-AA21-06 6 7568677 7568677 G A DSP Missense_Mutation p.R425Q 0.23 benign(0.118) TCGA-W3-AA21-06 6 76023073 76023073 C T FILIP1 Silent p.R825R 0.83 TCGA-W3-AA21-06 6 76023074 76023074 C T FILIP1 Missense_Mutation p.R825Q 0.83 tolerated(0.13) benign(0.072) TCGA-W3-AA21-06 6 76751789 76751789 C T IMPG1 Missense_Mutation p.R41K 0.62 tolerated(0.5) benign(0.037) TCGA-W3-AA21-06 6 84055900 84055900 C T ME1 Missense_Mutation p.E198K 0.74 deleterious(0) benign(0.207) TCGA-W3-AA21-06 7 100054485 100054485 G A C7orf61 Missense_Mutation p.R171W 0.59 deleterious(0) benign(0.292) TCGA-W3-AA21-06 7 100610057 100610057 G A MUC3A Missense_Mutation p.D848N 0.08 tolerated(0.19) benign(0.107) TCGA-W3-AA21-06 7 107204376 107204376 G A COG5 Missense_Mutation p.S20F 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-W3-AA21-06 7 107790495 107790495 C T NRCAM Missense_Mutation p.G1259R 0.42 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 7 111368308 111368308 C T DOCK4 3'UTR 0.44 TCGA-W3-AA21-06 7 120372962 120372962 G A KCND2 Missense_Mutation p.G374D 0.30 deleterious(0) probably_damaging(0.984) TCGA-W3-AA21-06 7 126882783 126882783 G A GRM8 Missense_Mutation p.S159F 0.39 deleterious(0) probably_damaging(0.972) TCGA-W3-AA21-06 7 128483568 128483569 GG A FLNC Frame_Shift_Del p.D917Tfs*5 0.23 TCGA-W3-AA21-06 7 131815309 131815309 C T PLXNA4 Missense_Mutation p.D1872N 0.25 deleterious(0.01) possibly_damaging(0.678) TCGA-W3-AA21-06 7 138601612 138601612 G A KIAA1549 Silent p.S920S 0.69 TCGA-W3-AA21-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.69 deleterious(0) probably_damaging(0.967) TCGA-W3-AA21-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.68 deleterious(0) possibly_damaging(0.838) TCGA-W3-AA21-06 7 142168624 142168624 C T TRBV5-4 Silent p.T33T 0.12 TCGA-W3-AA21-06 7 142627519 142627519 G A TRPV5 Nonsense_Mutation p.R51* 0.45 TCGA-W3-AA21-06 7 142658463 142658463 G A KEL Silent p.F69F 0.51 TCGA-W3-AA21-06 7 143454050 143454050 C T CTAGE6 Nonsense_Mutation p.W234* 0.13 TCGA-W3-AA21-06 7 143748042 143748042 C T OR2A5 Missense_Mutation p.S183F 0.38 deleterious(0) probably_damaging(0.988) TCGA-W3-AA21-06 7 149129118 149129118 G A ZNF777 Missense_Mutation p.P749S 0.44 deleterious(0.01) probably_damaging(1) TCGA-W3-AA21-06 7 149430560 149430560 G T KRBA1 Silent p.G838G 0.62 TCGA-W3-AA21-06 7 150269298 150269298 G A GIMAP4 Missense_Mutation p.G47E 0.22 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 7 150704329 150704329 G A NOS3 Missense_Mutation p.E693K 0.28 deleterious(0) possibly_damaging(0.737) TCGA-W3-AA21-06 7 1510240 1510240 C T INTS1 Silent p.R2182R 0.60 TCGA-W3-AA21-06 7 151716746 151716746 C T GALNTL5 Nonsense_Mutation p.R398* 0.55 TCGA-W3-AA21-06 7 20782585 20782585 C T ABCB5 Missense_Mutation p.S1037F 0.66 deleterious(0) possibly_damaging(0.789) TCGA-W3-AA21-06 7 21781695 21781695 T A DNAH11 Missense_Mutation p.F2696I 0.28 benign(0.087) TCGA-W3-AA21-06 7 22259572 22259572 G A RAPGEF5 Silent p.I150I 0.28 TCGA-W3-AA21-06 7 2515563 2515563 C T GRIFIN RNA 0.12 TCGA-W3-AA21-06 7 34009968 34009968 C T BMPER Missense_Mutation p.R144C 0.17 deleterious(0) possibly_damaging(0.513) TCGA-W3-AA21-06 7 34888231 34888231 C T NPSR1 Silent p.P327P 0.21 TCGA-W3-AA21-06 7 37901748 37901748 T G NME8 Splice_Site p.X129_splice 0.20 TCGA-W3-AA21-06 7 39379441 39379441 C T POU6F2 Missense_Mutation p.P238S 0.68 deleterious_low_confidence(0.03) unknown(0) TCGA-W3-AA21-06 7 4249773 4249773 G A SDK1 Missense_Mutation p.E1840K 0.21 tolerated(0.06) possibly_damaging(0.643) TCGA-W3-AA21-06 7 43548682 43548682 C T HECW1 Silent p.I1327I 0.41 TCGA-W3-AA21-06 7 44801091 44801091 C A ZMIZ2 Silent p.R428R 0.52 TCGA-W3-AA21-06 7 47944058 47944058 G A PKD1L1 Silent p.F616F 0.22 TCGA-W3-AA21-06 7 55540706 55540706 C T VOPP1 Missense_Mutation p.D121N 0.22 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-W3-AA21-06 7 6048881 6048881 C T AIMP2 5'UTR 0.13 TCGA-W3-AA21-06 7 6054839 6054839 G C AIMP2 Silent p.L66L 0.39 TCGA-W3-AA21-06 7 73520544 73520544 G A LIMK1 Silent p.A284A 0.22 TCGA-W3-AA21-06 7 75070771 75070771 C G POM121C Missense_Mutation p.V2L 0.14 deleterious(0.05) probably_damaging(0.942) TCGA-W3-AA21-06 7 7550727 7550727 C T COL28A1 Missense_Mutation p.D308N 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-W3-AA21-06 7 76109997 76109997 G A DTX2 Silent p.G57G 0.16 TCGA-W3-AA21-06 7 77764476 77764476 G A MAGI2 Missense_Mutation p.R965C 0.45 deleterious(0) probably_damaging(0.962) TCGA-W3-AA21-06 7 78150782 78150782 G A MAGI2 Missense_Mutation p.P240L 0.20 deleterious(0) probably_damaging(0.919) TCGA-W3-AA21-06 7 803540 803540 C T HEATR2 Missense_Mutation p.T571I 0.22 tolerated(0.06) benign(0.028) TCGA-W3-AA21-06 7 82545715 82545715 C T PCLO Missense_Mutation p.E3863K 0.42 unknown(0) TCGA-W3-AA21-06 7 82579283 82579283 C T PCLO Missense_Mutation p.A3541T 0.18 unknown(0) TCGA-W3-AA21-06 7 82584459 82584459 C T PCLO Missense_Mutation p.R1937Q 0.22 unknown(0) TCGA-W3-AA21-06 7 84642123 84642123 G A SEMA3D Silent p.I581I 0.18 TCGA-W3-AA21-06 7 86394594 86394594 T C GRM3 Missense_Mutation p.F45L 0.28 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 7 944716 944716 T G ADAP1 Missense_Mutation p.K161T 0.21 deleterious(0.02) probably_damaging(0.931) TCGA-W3-AA21-06 7 98628294 98628294 G A SMURF1 Silent p.I729I 0.41 TCGA-W3-AA21-06 7 99918759 99918759 G A SPDYE3 3'UTR 0.50 TCGA-W3-AA21-06 8 101589275 101589275 C T SNX31 Missense_Mutation p.S400N 0.25 tolerated(0.18) benign(0.025) TCGA-W3-AA21-06 8 10469458 10469458 C T RP1L1 Missense_Mutation p.G717E 0.55 benign(0.09) TCGA-W3-AA21-06 8 104778472 104778472 T A RIMS2 Missense_Mutation p.N135K 0.23 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-W3-AA21-06 8 108264116 108264116 G A ANGPT1 Silent p.S488S 0.59 TCGA-W3-AA21-06 8 110509232 110509232 C A PKHD1L1 Missense_Mutation p.P3471H 0.09 deleterious(0.02) possibly_damaging(0.519) TCGA-W3-AA21-06 8 113668416 113668416 G A CSMD3 Missense_Mutation p.R991C 0.30 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 8 113988216 113988216 C T CSMD3 Missense_Mutation p.V398I 0.18 tolerated_low_confidence(0.42) benign(0.001) TCGA-W3-AA21-06 8 121426231 121426231 G A MRPL13 Missense_Mutation p.P172S 0.35 tolerated(0.4) probably_damaging(0.937) TCGA-W3-AA21-06 8 132002735 132002735 G A ADCY8 Silent p.I338I 0.26 TCGA-W3-AA21-06 8 133142211 133142211 G A KCNQ3 Silent p.L639L 0.22 TCGA-W3-AA21-06 8 134146961 134146961 G A TG Missense_Mutation p.E2744K 0.70 tolerated(0.28) benign(0.035) TCGA-W3-AA21-06 8 143961146 143961146 G A CYP11B1 Silent p.A28A 0.26 TCGA-W3-AA21-06 8 144811397 144811397 C T FAM83H Missense_Mutation p.D182N 0.34 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 8 145001194 145001194 G A PLEC Missense_Mutation p.P1436L 0.72 unknown(0) TCGA-W3-AA21-06 8 145697590 145697590 C T KIFC2 Missense_Mutation p.R519W 0.22 tolerated(0.34) possibly_damaging(0.809) TCGA-W3-AA21-06 8 18729308 18729308 A T PSD3 Missense_Mutation p.L356I 0.20 deleterious_low_confidence(0.01) benign(0.049) TCGA-W3-AA21-06 8 21833962 21833962 C T XPO7 Silent p.F231F 0.25 TCGA-W3-AA21-06 8 21955752 21955752 C T FAM160B2 Silent p.T233T 0.20 TCGA-W3-AA21-06 8 21964999 21964999 G A NUDT18 Nonsense_Mutation p.R262* 0.62 TCGA-W3-AA21-06 8 27528619 27528619 A G SCARA3 Silent p.S524S 0.21 TCGA-W3-AA21-06 8 3072056 3072056 C T CSMD1 Silent p.G1610G 0.73 TCGA-W3-AA21-06 8 52284541 52284541 G A PXDNL Nonsense_Mutation p.Q1265* 0.39 TCGA-W3-AA21-06 8 52339295 52339295 G A PXDNL Missense_Mutation p.P517S 0.40 deleterious(0) probably_damaging(0.994) TCGA-W3-AA21-06 8 55540133 55540133 G A RP1 Missense_Mutation p.G1231R 0.70 tolerated(0.07) benign(0.004) TCGA-W3-AA21-06 8 55540134 55540134 G T RP1 Missense_Mutation p.G1231V 0.70 deleterious(0.01) benign(0.047) TCGA-W3-AA21-06 8 65509172 65509172 G A CYP7B1 3'UTR 0.12 TCGA-W3-AA21-06 8 6728110 6728110 G A DEFB1 3'UTR 0.12 TCGA-W3-AA21-06 8 71036133 71036133 T A NCOA2 Missense_Mutation p.M1427L 0.18 tolerated(0.06) benign(0.014) TCGA-W3-AA21-06 8 73848543 73848543 C T KCNB2 Missense_Mutation p.S318L 0.70 deleterious(0) probably_damaging(0.981) TCGA-W3-AA21-06 8 82441697 82441697 G A FABP12 Silent p.I74I 0.26 TCGA-W3-AA21-06 8 82443508 82443508 C T FABP12 Missense_Mutation p.E15K 0.19 tolerated(0.33) possibly_damaging(0.73) TCGA-W3-AA21-06 9 104193085 104193085 C T ALDOB Missense_Mutation p.G29R 0.26 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 9 125486547 125486547 C T OR1L4 Silent p.I93I 0.89 TCGA-W3-AA21-06 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.75 deleterious(0) probably_damaging(1) TCGA-W3-AA21-06 9 140356676 140356676 G A PNPLA7 Silent p.I1200I 0.87 TCGA-W3-AA21-06 9 21409235 21409235 C T IFNA8 Silent p.S20S 0.88 TCGA-W3-AA21-06 9 4850297 4850297 A G RCL1 Intron 0.81 TCGA-W3-AA21-06 9 5233853 5233853 A T INSL4 Silent p.G132G 0.82 TCGA-W3-AA21-06 9 77257676 77257676 C T RORB Silent p.T194T 0.86 TCGA-W3-AA21-06 X 105152794 105152794 G A NRK Silent p.G388G 0.80 TCGA-W3-AA21-06 X 109696034 109696034 G A RGAG1 Missense_Mutation p.G730E 0.90 tolerated(0.19) possibly_damaging(0.867) TCGA-W3-AA21-06 X 122772839 122772839 G A THOC2 Missense_Mutation p.P596S 0.91 deleterious(0) probably_damaging(0.998) TCGA-W3-AA21-06 X 123630900 123630900 G A TENM1 Missense_Mutation p.P1221S 0.87 deleterious(0.01) possibly_damaging(0.686) TCGA-W3-AA21-06 X 123805562 123805562 C T TENM1 Missense_Mutation p.G380E 0.80 deleterious(0.02) probably_damaging(1) TCGA-W3-AA21-06 X 12937381 12937381 C T TLR8 Silent p.F74F 0.93 TCGA-W3-AA21-06 X 142716665 142716665 C T SLITRK4 Missense_Mutation p.D754N 0.90 deleterious(0.05) benign(0.111) TCGA-W3-AA21-06 X 148798317 148798317 C A MAGEA11 Missense_Mutation p.H391N 0.89 deleterious(0.01) probably_damaging(0.968) TCGA-W3-AA21-06 X 14883004 14883004 G A FANCB Missense_Mutation p.T210I 0.94 deleterious(0) probably_damaging(0.989) TCGA-W3-AA21-06 X 151336841 151336841 G A GABRA3 Silent p.T446T 0.93 TCGA-W3-AA21-06 X 43590529 43590529 G A MAOA Silent p.R229R 0.91 TCGA-W3-AA21-06 X 49963394 49963394 C T AKAP4 Missense_Mutation p.D13N 0.85 tolerated(0.52) benign(0.006) TCGA-W3-AA21-06 X 73961847 73961847 C T KIAA2022 Missense_Mutation p.E849K 0.81 deleterious(0.05) possibly_damaging(0.572) TCGA-W3-AA21-06 X 78010825 78010825 G A LPAR4 Silent p.R153R 0.91 TCGA-W3-AA21-06 X 9862540 9862540 G A SHROOM2 Missense_Mutation p.D198N 0.97 tolerated(0.05) possibly_damaging(0.897) TCGA-WE-A8JZ-06 10 101841262 101841262 C T CPN1 Missense_Mutation p.E41K 0.48 tolerated(0.27) benign(0.309) TCGA-WE-A8JZ-06 10 102749057 102749057 C T C10orf2 Missense_Mutation p.H364Y 0.33 deleterious(0) probably_damaging(0.947) TCGA-WE-A8JZ-06 10 123987466 123987466 C T TACC2 Silent p.S2613S 0.46 TCGA-WE-A8JZ-06 10 134755154 134755154 G A TTC40 Silent p.L83L 0.26 TCGA-WE-A8JZ-06 10 135101809 135101809 T A TUBGCP2 Missense_Mutation p.I544F 0.07 deleterious(0) possibly_damaging(0.776) TCGA-WE-A8JZ-06 10 26355931 26355931 G A MYO3A Silent p.G327G 0.40 TCGA-WE-A8JZ-06 10 5204930 5204930 G A AKR1CL1 Silent p.F49F 0.32 TCGA-WE-A8JZ-06 10 55582075 55582075 C T PCDH15 Missense_Mutation p.G1806D 0.36 tolerated_low_confidence(0.15) unknown(0) TCGA-WE-A8JZ-06 10 69926160 69926160 G A MYPN Silent p.V570V 0.44 TCGA-WE-A8JZ-06 10 73450323 73450323 C T CDH23 Missense_Mutation p.R312W 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8JZ-06 10 73553122 73553122 C T CDH23 5'Flank 0.19 TCGA-WE-A8JZ-06 10 95386461 95386461 C T PDE6C Missense_Mutation p.P335L 0.47 deleterious(0.01) probably_damaging(0.916) TCGA-WE-A8JZ-06 11 104877823 104877823 G T CASP5 Silent p.I153I 0.32 TCGA-WE-A8JZ-06 11 106810503 106810503 C T GUCY1A2 Missense_Mutation p.E297K 0.72 tolerated(0.58) benign(0.062) TCGA-WE-A8JZ-06 11 112064634 112064634 C T BCO2 Missense_Mutation p.R184W 0.77 deleterious(0.01) possibly_damaging(0.67) TCGA-WE-A8JZ-06 11 114393742 114393742 C T NXPE1 Missense_Mutation p.G181R 0.86 tolerated(0.39) benign(0.013) TCGA-WE-A8JZ-06 11 120744870 120744870 C T GRIK4 Silent p.S334S 0.74 TCGA-WE-A8JZ-06 11 120983828 120983828 C T TECTA Silent p.F178F 0.81 TCGA-WE-A8JZ-06 11 123624564 123624564 G A OR6X1 Silent p.S221S 0.77 TCGA-WE-A8JZ-06 11 123813580 123813580 C T OR6T1 Silent p.R322R 0.86 TCGA-WE-A8JZ-06 11 1605827 1605827 G A KRTAP5-1 Missense_Mutation p.S218F 0.50 unknown(0) TCGA-WE-A8JZ-06 11 1718540 1718540 G A KRTAP5-6 Missense_Mutation p.G22E 0.57 unknown(0) TCGA-WE-A8JZ-06 11 40137537 40137537 C A LRRC4C Missense_Mutation p.L102F 0.39 deleterious(0.03) probably_damaging(0.976) TCGA-WE-A8JZ-06 11 4153652 4153652 G T RRM1 Splice_Site p.X635_splice 0.55 TCGA-WE-A8JZ-06 11 47758253 47758253 G A FNBP4 Missense_Mutation p.S499L 0.51 deleterious(0.03) possibly_damaging(0.741) TCGA-WE-A8JZ-06 11 55735493 55735493 C T OR10AG1 Silent p.G149G 0.58 TCGA-WE-A8JZ-06 11 60198353 60198353 C T MS4A5 Missense_Mutation p.P80S 0.86 tolerated(0.09) benign(0.444) TCGA-WE-A8JZ-06 11 61183924 61183924 C T CPSF7 Silent p.E249E 0.82 TCGA-WE-A8JZ-06 11 63069867 63069867 C T SLC22A10 Silent p.F379F 0.75 TCGA-WE-A8JZ-06 11 69514281 69514281 A G FGF19 Missense_Mutation p.Y134H 0.72 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 11 71944500 71944500 C T INPPL1 Missense_Mutation p.P686S 0.84 deleterious(0) probably_damaging(0.999) TCGA-WE-A8JZ-06 11 9202565 9202565 G A DENND5A Missense_Mutation p.P402S 0.58 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 12 111776124 111776124 G A CUX2 Silent p.L1077L 0.30 TCGA-WE-A8JZ-06 12 123494521 123494521 G A PITPNM2 Silent p.S173S 0.55 TCGA-WE-A8JZ-06 12 22059136 22059136 G A ABCC9 Silent p.F514F 0.26 TCGA-WE-A8JZ-06 12 26839467 26839467 G A ITPR2 Silent p.S365S 0.29 TCGA-WE-A8JZ-06 12 40076888 40076888 G A C12orf40 Missense_Mutation p.D388N 0.20 tolerated(0.7) benign(0.009) TCGA-WE-A8JZ-06 12 54109801 54109801 G A CALCOCO1 Nonsense_Mutation p.R346* 0.46 TCGA-WE-A8JZ-06 12 55420486 55420486 G A NEUROD4 Missense_Mutation p.R88Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-WE-A8JZ-06 12 57396599 57396599 G A ZBTB39 Silent p.I701I 0.61 TCGA-WE-A8JZ-06 12 6948222 6948222 C T LEPREL2 Missense_Mutation p.P654L 0.65 tolerated(0.07) probably_damaging(0.992) TCGA-WE-A8JZ-06 12 71978362 71978362 G A LGR5 Missense_Mutation p.E858K 0.30 deleterious(0) probably_damaging(0.998) TCGA-WE-A8JZ-06 12 89743195 89743196 - T DUSP6 Frame_Shift_Ins p.S328Ifs*6 0.38 TCGA-WE-A8JZ-06 13 101727002 101727002 C T NALCN Silent p.K1322K 0.39 TCGA-WE-A8JZ-06 13 115037840 115037840 C T CDC16 Silent p.S595S 0.47 TCGA-WE-A8JZ-06 13 41657016 41657016 C T WBP4 Missense_Mutation p.S366F 0.36 deleterious(0) possibly_damaging(0.853) TCGA-WE-A8JZ-06 13 42877913 42877913 C T AKAP11 Silent p.I1677I 0.34 TCGA-WE-A8JZ-06 13 96543131 96543131 C T UGGT2 Missense_Mutation p.M981I 0.41 tolerated(0.2) possibly_damaging(0.877) TCGA-WE-A8JZ-06 14 103406211 103406211 C T CDC42BPB Silent p.R1555R 0.79 TCGA-WE-A8JZ-06 14 79270139 79270139 G A NRXN3 Missense_Mutation p.G368R 0.79 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 14 88729597 88729597 G A KCNK10 Silent p.F117F 0.87 TCGA-WE-A8JZ-06 15 31776457 31776457 C T OTUD7A Silent p.P607P 0.56 TCGA-WE-A8JZ-06 15 41228955 41228955 G A DLL4 Silent p.Q590Q 0.72 TCGA-WE-A8JZ-06 15 42174315 42174315 G A SPTBN5 Missense_Mutation p.S759L 0.89 benign(0.104) TCGA-WE-A8JZ-06 15 62939612 62939612 C T TLN2 Missense_Mutation p.R35W 0.82 deleterious(0) probably_damaging(0.994) TCGA-WE-A8JZ-06 15 63089464 63089464 C T TLN2 Silent p.L2033L 0.80 TCGA-WE-A8JZ-06 15 97326937 97326937 G A SPATA8 Missense_Mutation p.E18K 0.89 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-WE-A8JZ-06 16 11001354 11001354 C A CIITA Missense_Mutation p.R669S 0.46 tolerated(0.09) benign(0.298) TCGA-WE-A8JZ-06 16 1476185 1476185 G T C16orf91 Silent p.P146P 0.23 TCGA-WE-A8JZ-06 16 1903114 1903114 C T MEIOB Missense_Mutation p.R235K 0.45 tolerated(0.49) benign(0.421) TCGA-WE-A8JZ-06 16 20999061 20999061 G A DNAH3 Missense_Mutation p.S2279L 0.51 deleterious(0) possibly_damaging(0.752) TCGA-WE-A8JZ-06 16 2313179 2313179 G A RNPS1 Missense_Mutation p.R113C 0.09 tolerated(0.1) unknown(0) TCGA-WE-A8JZ-06 16 29871937 29871937 C T CDIPT Missense_Mutation p.G127R 0.48 tolerated(0.06) possibly_damaging(0.675) TCGA-WE-A8JZ-06 16 3139547 3139547 C T ZSCAN10 Missense_Mutation p.G575S 0.54 deleterious(0.01) probably_damaging(1) TCGA-WE-A8JZ-06 16 9000381 9000381 C A USP7 Missense_Mutation p.D444Y 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-WE-A8JZ-06 16 9000382 9000382 C T USP7 Silent p.K443K 0.40 TCGA-WE-A8JZ-06 17 15619583 15619583 C T ZNF286A Missense_Mutation p.S182L 0.78 tolerated(0.06) benign(0.084) TCGA-WE-A8JZ-06 17 16703435 16703435 G A CCDC144A 3'UTR 0.50 TCGA-WE-A8JZ-06 17 2089982 2089982 G A SMG6 Missense_Mutation p.P1044S 0.78 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 17 37420455 37420455 G A FBXL20 Silent p.I392I 0.50 TCGA-WE-A8JZ-06 17 38955997 38955997 C T KRT28 Missense_Mutation p.G50E 0.37 deleterious(0.02) benign(0.167) TCGA-WE-A8JZ-06 17 39551269 39551269 G T KRT31 Missense_Mutation p.Q310K 0.11 deleterious(0.03) possibly_damaging(0.528) TCGA-WE-A8JZ-06 17 39883375 39883375 C T HAP1 Missense_Mutation p.E433K 0.33 deleterious(0) benign(0.079) TCGA-WE-A8JZ-06 17 39883376 39883376 C T HAP1 Silent p.Q432Q 0.33 TCGA-WE-A8JZ-06 17 48918419 48918419 C T WFIKKN2 3'UTR 0.39 TCGA-WE-A8JZ-06 17 55027402 55027402 G A COIL Missense_Mutation p.L401F 0.36 tolerated(0.57) benign(0.034) TCGA-WE-A8JZ-06 17 66339782 66339782 C T ARSG Missense_Mutation p.P86S 0.41 deleterious(0) probably_damaging(0.999) TCGA-WE-A8JZ-06 17 66883619 66883619 G A ABCA8 Missense_Mutation p.S1018F 0.50 deleterious(0.01) probably_damaging(1) TCGA-WE-A8JZ-06 17 7748744 7748744 C T KDM6B 5'UTR 0.87 TCGA-WE-A8JZ-06 17 80022062 80022067 GAGCCA - DUS1L In_Frame_Del p.L94_A95del 0.28 TCGA-WE-A8JZ-06 18 28968883 28968883 C T DSG4 Missense_Mutation p.P140L 0.35 deleterious(0.03) probably_damaging(1) TCGA-WE-A8JZ-06 18 34647185 34647199 TCAATGCTGTGGTCA - KIAA1328 In_Frame_Del p.Q304_H308del 0.25 TCGA-WE-A8JZ-06 18 43668103 43668103 G A ATP5A1 Silent p.A257A 0.45 TCGA-WE-A8JZ-06 18 43698217 43698217 C T HAUS1 Silent p.S92S 0.43 TCGA-WE-A8JZ-06 18 45566491 45566491 C T ZBTB7C Missense_Mutation p.D330N 0.48 deleterious(0) probably_damaging(0.99) TCGA-WE-A8JZ-06 18 47480795 47480795 C T MYO5B Missense_Mutation p.G519E 0.42 deleterious(0) probably_damaging(0.956) TCGA-WE-A8JZ-06 18 50705382 50705382 G A DCC Missense_Mutation p.G490E 0.35 tolerated(0.7) benign(0.094) TCGA-WE-A8JZ-06 18 51863596 51863596 C T STARD6 Missense_Mutation p.E56K 0.46 tolerated(0.62) possibly_damaging(0.825) TCGA-WE-A8JZ-06 18 57103326 57103326 G A CCBE1 Silent p.I345I 0.39 TCGA-WE-A8JZ-06 18 63489456 63489456 C T CDH7 Silent p.V255V 0.43 TCGA-WE-A8JZ-06 19 11833105 11833105 G A ZNF823 Missense_Mutation p.P415L 0.52 deleterious(0.02) probably_damaging(1) TCGA-WE-A8JZ-06 19 11943671 11943671 C T ZNF440 Silent p.Y560Y 0.26 TCGA-WE-A8JZ-06 19 19656494 19656494 C T CILP2 Missense_Mutation p.S1047F 0.64 deleterious(0) benign(0.396) TCGA-WE-A8JZ-06 19 19656495 19656495 C T CILP2 Silent p.S1047S 0.64 TCGA-WE-A8JZ-06 19 35836557 35836557 C T CD22 Missense_Mutation p.P754L 0.79 deleterious(0.03) possibly_damaging(0.452) TCGA-WE-A8JZ-06 19 38817909 38817909 C T KCNK6 Silent p.L270L 0.74 TCGA-WE-A8JZ-06 19 44934428 44934428 C T ZNF229 Nonsense_Mutation p.W176* 0.70 TCGA-WE-A8JZ-06 19 45175153 45175153 C T CEACAM19 5'UTR 0.82 TCGA-WE-A8JZ-06 19 46095166 46095166 G A GPR4 5'UTR 0.23 TCGA-WE-A8JZ-06 19 47823617 47823617 G A C5AR1 Missense_Mutation p.D195N 0.40 tolerated(0.66) benign(0.003) TCGA-WE-A8JZ-06 19 51410168 51410168 C T KLK4 3'UTR 0.38 TCGA-WE-A8JZ-06 19 52852446 52852446 C T ZNF610 Silent p.A7A 0.17 TCGA-WE-A8JZ-06 19 55333172 55333172 C T KIR3DL1 Missense_Mutation p.R270C 0.27 tolerated(0.11) benign(0.147) TCGA-WE-A8JZ-06 19 57876261 57876261 G C TRAPPC2P1 Missense_Mutation p.M20I 0.42 tolerated(0.47) benign(0.003) TCGA-WE-A8JZ-06 19 7589912 7589912 C T MCOLN1 Missense_Mutation p.P33S 0.58 tolerated(0.77) benign(0) TCGA-WE-A8JZ-06 19 9047600 9047600 G A MUC16 Missense_Mutation p.S11344L 0.59 benign(0.003) TCGA-WE-A8JZ-06 19 9064059 9064059 G T MUC16 Missense_Mutation p.P7796Q 0.25 unknown(0) TCGA-WE-A8JZ-06 19 9452847 9452847 C T ZNF559 Silent p.F240F 0.45 TCGA-WE-A8JZ-06 19 9578704 9578704 G A ZNF560 Missense_Mutation p.L307F 0.44 tolerated(0.1) benign(0.074) TCGA-WE-A8JZ-06 1 111957219 111957219 G A OVGP1 Missense_Mutation p.P635L 0.68 tolerated_low_confidence(0.77) benign(0.003) TCGA-WE-A8JZ-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.83 tolerated(0.06) benign(0.006) TCGA-WE-A8JZ-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.84 deleterious(0.01) benign(0.045) TCGA-WE-A8JZ-06 1 1275856 1275856 G A DVL1 Silent p.T211T 0.36 TCGA-WE-A8JZ-06 1 12835013 12835013 G A PRAMEF12 Translation_Start_Site p.M1? 0.42 deleterious(0) possibly_damaging(0.584) TCGA-WE-A8JZ-06 1 145507721 145507721 G A RBM8A Missense_Mutation p.E19K 0.45 deleterious(0.04) possibly_damaging(0.521) TCGA-WE-A8JZ-06 1 1480340 1480340 C T SSU72 Silent p.K89K 0.47 TCGA-WE-A8JZ-06 1 150445078 150445078 C T RPRD2 Silent p.V1218V 0.41 TCGA-WE-A8JZ-06 1 151377355 151377355 G A POGZ Nonsense_Mutation p.Q1386* 0.47 TCGA-WE-A8JZ-06 1 151377356 151377356 G A POGZ Silent p.H1385H 0.48 TCGA-WE-A8JZ-06 1 152285028 152285028 G A FLG Silent p.S778S 0.39 TCGA-WE-A8JZ-06 1 152382990 152382990 C T CRNN Missense_Mutation p.E190K 0.44 deleterious(0.03) benign(0.293) TCGA-WE-A8JZ-06 1 153065972 153065972 C T SPRR2E 3'UTR 0.46 TCGA-WE-A8JZ-06 1 153303210 153303210 G A PGLYRP4 3'UTR 0.50 TCGA-WE-A8JZ-06 1 157548582 157548582 C T FCRL4 Silent p.E446E 0.55 TCGA-WE-A8JZ-06 1 161199412 161199412 C T TOMM40L 3'UTR 0.52 TCGA-WE-A8JZ-06 1 172633486 172633486 C T FASLG Missense_Mutation p.P136L 0.41 tolerated(0.73) benign(0.001) TCGA-WE-A8JZ-06 1 179609548 179609548 C T TDRD5 Missense_Mutation p.P590S 0.41 deleterious(0) probably_damaging(0.999) TCGA-WE-A8JZ-06 1 182798025 182798025 C T NPL Silent p.N315N 0.35 TCGA-WE-A8JZ-06 1 190250689 190250689 C A BRINP3 Splice_Site p.X143_splice 0.47 TCGA-WE-A8JZ-06 1 203024785 203024785 G T PPFIA4 Missense_Mutation p.M179I 0.42 tolerated(0.06) benign(0.005) TCGA-WE-A8JZ-06 1 207739232 207739232 G A CR1 Missense_Mutation p.E1306K 0.39 tolerated(0.29) benign(0.051) TCGA-WE-A8JZ-06 1 230338943 230338943 C T GALNT2 Missense_Mutation p.S94F 0.38 deleterious(0.03) benign(0.055) TCGA-WE-A8JZ-06 1 231409763 231409763 A G GNPAT Silent p.L566L 0.40 TCGA-WE-A8JZ-06 1 234458977 234458977 C T SLC35F3 Silent p.S487S 0.36 TCGA-WE-A8JZ-06 1 23761058 23761058 G C ASAP3 Silent p.S601S 0.42 TCGA-WE-A8JZ-06 1 23761059 23761059 G A ASAP3 Missense_Mutation p.S601F 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 1 247921067 247921067 G A OR1C1 Silent p.I214I 0.51 TCGA-WE-A8JZ-06 1 34038285 34038285 G A CSMD2 Missense_Mutation p.S2530F 0.41 deleterious(0.02) benign(0.144) TCGA-WE-A8JZ-06 1 38187506 38187506 C T EPHA10 Missense_Mutation p.E658K 0.39 deleterious(0) benign(0.042) TCGA-WE-A8JZ-06 1 43213950 43213950 G A LEPRE1 Missense_Mutation p.H587Y 0.50 deleterious(0) probably_damaging(0.974) TCGA-WE-A8JZ-06 1 62367115 62367115 G A INADL Missense_Mutation p.G1122E 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 1 67591497 67591497 G A C1orf141 Silent p.S57S 0.42 TCGA-WE-A8JZ-06 1 91840989 91840989 C T HFM1 Silent p.R537R 0.86 TCGA-WE-A8JZ-06 20 2377189 2377189 G A TGM6 Silent p.Q154Q 0.78 TCGA-WE-A8JZ-06 20 42602057 42602057 C T TOX2 Silent p.L50L 0.21 TCGA-WE-A8JZ-06 20 43882300 43882300 C T SLPI Missense_Mutation p.D54N 0.64 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 20 60898601 60898601 C T LAMA5 Missense_Mutation p.R1992H 0.40 benign(0.272) TCGA-WE-A8JZ-06 20 61143569 61143569 G A C20orf166 5'Flank 0.70 TCGA-WE-A8JZ-06 20 61939427 61939427 G A COL20A1 Missense_Mutation p.G254R 0.16 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 21 22804472 22804472 C T NCAM2 Nonsense_Mutation p.Q509* 0.54 TCGA-WE-A8JZ-06 21 46047444 46047444 C T KRTAP10-9 Missense_Mutation p.S119L 0.49 tolerated(0.08) unknown(0) TCGA-WE-A8JZ-06 22 24921894 24921894 G A UPB1 3'UTR 0.48 TCGA-WE-A8JZ-06 22 24964095 24964095 C A SNRPD3 Missense_Mutation p.N90K 0.41 tolerated(0.98) benign(0.001) TCGA-WE-A8JZ-06 22 30127008 30127008 G A ZMAT5 3'UTR 0.33 TCGA-WE-A8JZ-06 22 30209472 30209472 C T ASCC2 Silent p.L260L 0.35 TCGA-WE-A8JZ-06 22 50905988 50905988 C T SBF1 Silent p.S137S 0.50 TCGA-WE-A8JZ-06 2 107041658 107041658 C T RGPD3 Missense_Mutation p.G922E 0.35 deleterious(0.02) benign(0.325) TCGA-WE-A8JZ-06 2 118578755 118578755 C T DDX18 Missense_Mutation p.S178L 0.44 tolerated(0.12) benign(0.026) TCGA-WE-A8JZ-06 2 141806737 141806737 C G LRP1B Missense_Mutation p.R536T 0.42 benign(0.227) TCGA-WE-A8JZ-06 2 165946688 165946688 C T SCN3A Missense_Mutation p.G1992E 0.46 tolerated_low_confidence(0.09) benign(0.009) TCGA-WE-A8JZ-06 2 167133591 167133591 C T SCN9A Missense_Mutation p.G915R 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 2 168106285 168106285 G A XIRP2 Missense_Mutation p.D2795N 0.46 benign(0.002) TCGA-WE-A8JZ-06 2 170059278 170059278 C T LRP2 Missense_Mutation p.E2733K 0.43 possibly_damaging(0.861) TCGA-WE-A8JZ-06 2 189861125 189861125 G A COL3A1 Missense_Mutation p.G555E 0.34 unknown(0) TCGA-WE-A8JZ-06 2 203836325 203836325 C A CARF Missense_Mutation p.L399I 0.43 tolerated(0.63) benign(0.053) TCGA-WE-A8JZ-06 2 215901730 215901730 G A ABCA12 Missense_Mutation p.T311I 0.44 tolerated(0.09) benign(0.221) TCGA-WE-A8JZ-06 2 219029884 219029884 G A CXCR1 Silent p.F17F 0.38 TCGA-WE-A8JZ-06 2 229890307 229890307 C T PID1 3'UTR 0.38 TCGA-WE-A8JZ-06 2 26653716 26653716 C T DRC1 Silent p.A247A 0.37 TCGA-WE-A8JZ-06 2 26653717 26653717 C T DRC1 Missense_Mutation p.L248F 0.36 deleterious(0.02) benign(0.274) TCGA-WE-A8JZ-06 2 32605283 32605283 T A BIRC6 Missense_Mutation p.D190E 0.57 benign(0.003) TCGA-WE-A8JZ-06 3 100002529 100002529 C T TBC1D23 Missense_Mutation p.S117L 0.44 deleterious(0.05) possibly_damaging(0.742) TCGA-WE-A8JZ-06 3 100976613 100976613 C T IMPG2 Missense_Mutation p.V305I 0.27 tolerated(0.67) benign(0.005) TCGA-WE-A8JZ-06 3 119886344 119886344 C T GPR156 Silent p.R660R 0.43 TCGA-WE-A8JZ-06 3 121980884 121980884 G A CASR Silent p.L334L 0.45 TCGA-WE-A8JZ-06 3 126452010 126452010 C T CHCHD6 Missense_Mutation p.S119F 0.46 deleterious(0.03) benign(0.086) TCGA-WE-A8JZ-06 3 13364811 13364811 C T NUP210 Missense_Mutation p.R1589K 0.35 tolerated(1) benign(0.003) TCGA-WE-A8JZ-06 3 138724463 138724463 G A PRR23A Silent p.F216F 0.32 TCGA-WE-A8JZ-06 3 148614438 148614438 G A CPA3 Missense_Mutation p.E400K 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 3 148880110 148880110 C T HPS3 Missense_Mutation p.S761F 0.43 tolerated(0.71) benign(0.054) TCGA-WE-A8JZ-06 3 14964555 14964555 C T FGD5 Silent p.I1270I 0.31 TCGA-WE-A8JZ-06 3 151542569 151542569 G A AADAC Missense_Mutation p.G184S 0.36 tolerated(0.09) possibly_damaging(0.871) TCGA-WE-A8JZ-06 3 151542570 151542570 G A AADAC Missense_Mutation p.G184D 0.36 deleterious(0.01) probably_damaging(0.949) TCGA-WE-A8JZ-06 3 178560445 178560445 C T KCNMB2 Missense_Mutation p.S143F 0.44 tolerated(1) probably_damaging(0.998) TCGA-WE-A8JZ-06 3 185184669 185184669 C T MAP3K13 Missense_Mutation p.R521C 0.43 deleterious(0) probably_damaging(0.953) TCGA-WE-A8JZ-06 3 36897380 36897380 G A TRANK1 Missense_Mutation p.S1234F 0.45 deleterious(0) probably_damaging(0.993) TCGA-WE-A8JZ-06 3 36898015 36898015 G T TRANK1 Silent p.P1022P 0.19 TCGA-WE-A8JZ-06 3 3887429 3887429 C T LRRN1 Silent p.I368I 0.38 TCGA-WE-A8JZ-06 3 51747073 51747073 C T GRM2 Silent p.F345F 0.44 TCGA-WE-A8JZ-06 3 58419492 58419492 T C PDHB Intron 0.14 TCGA-WE-A8JZ-06 3 64139035 64139035 C T PRICKLE2 Missense_Mutation p.A204T 0.32 deleterious(0) possibly_damaging(0.573) TCGA-WE-A8JZ-06 3 77612321 77612321 C T ROBO2 Missense_Mutation p.S524F 0.47 tolerated(0.44) possibly_damaging(0.485) TCGA-WE-A8JZ-06 4 106858242 106858242 C G NPNT Nonsense_Mutation p.Y144* 0.33 TCGA-WE-A8JZ-06 4 113186897 113186897 C T AP1AR Missense_Mutation p.P150S 0.43 tolerated(0.36) benign(0.342) TCGA-WE-A8JZ-06 4 123541888 123541888 G A IL21 Missense_Mutation p.P58S 0.49 tolerated(0.45) benign(0.369) TCGA-WE-A8JZ-06 4 134111300 134111300 G A PCDH10 Silent p.R1036R 0.61 TCGA-WE-A8JZ-06 4 141578257 141578257 G A TBC1D9 Silent p.S777S 0.37 TCGA-WE-A8JZ-06 4 144390252 144390252 G A GAB1 Silent p.Q695Q 0.53 TCGA-WE-A8JZ-06 4 155510008 155510008 C T FGA Missense_Mutation p.D101N 0.21 deleterious(0.03) possibly_damaging(0.543) TCGA-WE-A8JZ-06 4 158262534 158262534 G A GRIA2 Missense_Mutation p.E655K 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-WE-A8JZ-06 4 169212919 169212919 T C DDX60 Missense_Mutation p.M341V 0.26 tolerated(1) benign(0) TCGA-WE-A8JZ-06 4 36162223 36162223 C G ARAP2 Missense_Mutation p.W767S 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 4 36231184 36231184 T C ARAP2 5'UTR 0.27 TCGA-WE-A8JZ-06 4 48486961 48486961 C A SLC10A4 Silent p.T201T 0.23 TCGA-WE-A8JZ-06 4 57181978 57181978 G T KIAA1211 Silent p.G770G 0.59 TCGA-WE-A8JZ-06 4 80328215 80328215 G A GK2 Silent p.L380L 0.55 TCGA-WE-A8JZ-06 4 83602008 83602008 C T SCD5 Missense_Mutation p.D141N 0.56 tolerated(0.14) benign(0.246) TCGA-WE-A8JZ-06 4 84240557 84240557 G A HPSE Nonsense_Mutation p.Q147* 0.25 TCGA-WE-A8JZ-06 5 111066545 111066545 A G NREP 3'UTR 0.47 TCGA-WE-A8JZ-06 5 118872156 118872156 G A HSD17B4 Missense_Mutation p.G703S 0.57 deleterious(0.01) probably_damaging(0.953) TCGA-WE-A8JZ-06 5 126792949 126792949 C T MEGF10 Missense_Mutation p.S1121F 0.32 deleterious(0) benign(0.156) TCGA-WE-A8JZ-06 5 140209432 140209432 G A PCDHA6 Missense_Mutation p.G586S 0.43 tolerated_low_confidence(0.06) benign(0.209) TCGA-WE-A8JZ-06 5 140554516 140554516 C T PCDHB7 Silent p.L700L 0.27 TCGA-WE-A8JZ-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.24 tolerated_low_confidence(0.62) benign(0) TCGA-WE-A8JZ-06 5 140763292 140763292 G A PCDHGA7 Missense_Mutation p.E276K 0.42 tolerated_low_confidence(0.23) benign(0.06) TCGA-WE-A8JZ-06 5 140802145 140802145 C T PCDHGA11 Missense_Mutation p.P451S 0.41 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-WE-A8JZ-06 5 142586786 142586786 C T ARHGAP26 Missense_Mutation p.S671L 0.42 tolerated(0.17) benign(0.307) TCGA-WE-A8JZ-06 5 149792284 149792284 C T CD74 Missense_Mutation p.R10Q 0.36 tolerated_low_confidence(0.36) benign(0) TCGA-WE-A8JZ-06 5 151784276 151784276 G A NMUR2 Silent p.S133S 0.41 TCGA-WE-A8JZ-06 5 151784277 151784277 G A NMUR2 Missense_Mutation p.S133F 0.42 deleterious(0) probably_damaging(0.994) TCGA-WE-A8JZ-06 5 156464326 156464326 C T HAVCR1 Missense_Mutation p.G295E 0.40 deleterious(0) benign(0.133) TCGA-WE-A8JZ-06 5 161317941 161317941 G A GABRA1 Silent p.K247K 0.36 TCGA-WE-A8JZ-06 5 175520248 175520248 A C FAM153B Missense_Mutation p.T27P 0.38 tolerated_low_confidence(0.12) benign(0) TCGA-WE-A8JZ-06 5 176304642 176304642 G A UNC5A Missense_Mutation p.E525K 0.43 deleterious(0.03) possibly_damaging(0.702) TCGA-WE-A8JZ-06 5 176813064 176813064 C A SLC34A1 Nonsense_Mutation p.C62* 0.17 TCGA-WE-A8JZ-06 5 178416351 178416351 C T GRM6 Nonsense_Mutation p.W356* 0.42 TCGA-WE-A8JZ-06 5 39202159 39202159 C T FYB Missense_Mutation p.E312K 0.48 deleterious(0) possibly_damaging(0.773) TCGA-WE-A8JZ-06 5 78610536 78610536 C T JMY Silent p.L841L 0.55 TCGA-WE-A8JZ-06 5 79363932 79363932 G A THBS4 Missense_Mutation p.G444E 0.36 tolerated(0.05) probably_damaging(1) TCGA-WE-A8JZ-06 5 81573643 81573643 C T RPS23 Silent p.R11R 0.44 TCGA-WE-A8JZ-06 6 110777667 110777667 C T SLC22A16 Intron 0.75 TCGA-WE-A8JZ-06 6 168352379 168352379 G A MLLT4 Missense_Mutation p.G1442S 0.38 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-WE-A8JZ-06 6 17779270 17779270 C T KIF13A Missense_Mutation p.E1334K 0.62 tolerated(0.34) probably_damaging(0.989) TCGA-WE-A8JZ-06 6 24596215 24596215 G A KIAA0319 Silent p.L229L 0.42 TCGA-WE-A8JZ-06 6 25913552 25913552 C T SLC17A2 Missense_Mutation p.A428T 0.21 tolerated_low_confidence(0.87) benign(0.008) TCGA-WE-A8JZ-06 6 27782828 27782828 G A HIST1H2BM Missense_Mutation p.E3K 0.48 deleterious_low_confidence(0.02) benign(0.004) TCGA-WE-A8JZ-06 6 28331586 28331586 T G ZKSCAN3 Missense_Mutation p.S251A 0.40 tolerated(0.12) benign(0.02) TCGA-WE-A8JZ-06 6 28554302 28554302 C A SCAND3 Missense_Mutation p.G65W 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8JZ-06 6 29797590 29797590 C T HLA-G Intron 0.42 TCGA-WE-A8JZ-06 6 4069268 4069268 C T FAM217A Missense_Mutation p.E397K 0.38 tolerated(0.06) benign(0.048) TCGA-WE-A8JZ-06 6 42153480 42153480 T C GUCA1B Missense_Mutation p.Q138R 0.55 tolerated(0.51) benign(0.009) TCGA-WE-A8JZ-06 6 53370293 53370293 A C GCLC Missense_Mutation p.V431G 0.36 deleterious(0) probably_damaging(0.961) TCGA-WE-A8JZ-06 6 56035579 56035579 C T COL21A1 Nonsense_Mutation p.W298* 0.22 TCGA-WE-A8JZ-06 6 76024012 76024012 C T FILIP1 Silent p.R512R 0.83 TCGA-WE-A8JZ-06 6 90448077 90448077 G A MDN1 Missense_Mutation p.P1564L 0.78 benign(0.131) TCGA-WE-A8JZ-06 7 122635178 122635178 C T TAS2R16 Missense_Mutation p.E171K 0.38 tolerated(1) benign(0.001) TCGA-WE-A8JZ-06 7 142120030 142120030 G A TRBV7-7 Missense_Mutation p.S46L 0.47 deleterious(0.04) probably_damaging(0.93) TCGA-WE-A8JZ-06 7 150752900 150752900 G A CDK5 Silent p.F116F 0.50 TCGA-WE-A8JZ-06 7 27282734 27282734 G A EVX1 Missense_Mutation p.E29K 0.50 deleterious(0.05) benign(0.067) TCGA-WE-A8JZ-06 7 36657910 36657910 G A AOAH Silent p.F248F 0.38 TCGA-WE-A8JZ-06 7 37936686 37936686 G A NME8 Missense_Mutation p.E587K 0.38 tolerated_low_confidence(0.19) benign(0.018) TCGA-WE-A8JZ-06 7 43547713 43547713 C T HECW1 Silent p.T1283T 0.38 TCGA-WE-A8JZ-06 7 44807196 44807196 C T ZMIZ2 Silent p.L913L 0.33 TCGA-WE-A8JZ-06 7 49951703 49951703 C T VWC2 Silent p.C300C 0.29 TCGA-WE-A8JZ-06 7 50468332 50468332 C T IKZF1 3'UTR 0.54 TCGA-WE-A8JZ-06 7 56174175 56174175 G A CHCHD2 5'UTR 0.53 TCGA-WE-A8JZ-06 7 74565198 74565198 C T GTF2IRD2B 3'UTR 0.08 TCGA-WE-A8JZ-06 7 75614956 75614956 C A POR Silent p.G486G 0.48 TCGA-WE-A8JZ-06 7 92861655 92861655 G A CCDC132 5'UTR 0.21 TCGA-WE-A8JZ-06 7 99527104 99527104 T C GJC3 Missense_Mutation p.E47G 0.44 deleterious(0) probably_damaging(0.965) TCGA-WE-A8JZ-06 8 110432870 110432870 C T PKHD1L1 Missense_Mutation p.S883L 0.18 deleterious(0.02) benign(0.049) TCGA-WE-A8JZ-06 8 113259321 113259321 G A CSMD3 Missense_Mutation p.L3384F 0.45 tolerated(0.44) probably_damaging(0.97) TCGA-WE-A8JZ-06 8 132051947 132051947 G A ADCY8 Silent p.L211L 0.59 TCGA-WE-A8JZ-06 8 146279656 146279656 C T C8orf33 3'UTR 0.19 TCGA-WE-A8JZ-06 8 21837618 21837618 C T XPO7 Silent p.I287I 0.30 TCGA-WE-A8JZ-06 8 27887882 27887882 C T NUGGC Silent p.R654R 0.56 TCGA-WE-A8JZ-06 8 30361834 30361834 C G RBPMS Missense_Mutation p.T93R 0.60 deleterious(0) benign(0.43) TCGA-WE-A8JZ-06 8 32616891 32616891 C T NRG1 Missense_Mutation p.S338F 0.63 deleterious(0) probably_damaging(1) TCGA-WE-A8JZ-06 8 54141828 54141828 G A OPRK1 3'UTR 0.29 TCGA-WE-A8JZ-06 8 55542851 55542851 G A RP1 Missense_Mutation p.E2137K 0.36 deleterious(0.01) possibly_damaging(0.832) TCGA-WE-A8JZ-06 8 77763864 77763864 G A ZFHX4 Silent p.L1569L 0.69 TCGA-WE-A8JZ-06 9 125239867 125239867 G A OR1J1 Silent p.F113F 0.75 TCGA-WE-A8JZ-06 9 126164004 126164004 G A DENND1A Intron 0.92 TCGA-WE-A8JZ-06 9 134350144 134350144 G T PRRC2B Missense_Mutation p.Q876H 0.32 tolerated(0.44) benign(0.003) TCGA-WE-A8JZ-06 9 74340602 74340602 G T TMEM2 Missense_Mutation p.F691L 0.73 tolerated(0.06) benign(0.258) TCGA-WE-A8JZ-06 9 79959124 79959124 G A VPS13A Missense_Mutation p.R2361K 0.84 tolerated(0.06) benign(0.005) TCGA-WE-A8JZ-06 X 105277603 105277603 G A SERPINA7 Missense_Mutation p.T379I 0.86 tolerated(0.23) benign(0.019) TCGA-WE-A8JZ-06 X 135862986 135862986 G A ARHGEF6 Missense_Mutation p.S19F 0.91 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-A8JZ-06 X 150912242 150912242 G A CNGA2 Missense_Mutation p.V423M 0.94 tolerated(0.11) probably_damaging(0.919) TCGA-WE-A8JZ-06 X 152159215 152159215 C T PNMA5 Missense_Mutation p.D310N 0.85 tolerated(0.16) possibly_damaging(0.879) TCGA-WE-A8JZ-06 X 153215747 153215747 G A HCFC1 Missense_Mutation p.A1984V 0.95 deleterious(0) probably_damaging(0.956) TCGA-WE-A8JZ-06 X 49108054 49108054 C T FOXP3 Intron 0.62 TCGA-WE-A8JZ-06 X 5821226 5821226 C G NLGN4X Missense_Mutation p.G498A 0.88 deleterious(0) probably_damaging(0.997) TCGA-WE-A8JZ-06 X 73062962 73062962 C T XIST RNA 0.89 TCGA-WE-A8K1-06 10 102546702 102546702 G A PAX2 Missense_Mutation p.E207K 0.27 tolerated(0.32) benign(0.001) TCGA-WE-A8K1-06 10 104111035 104111035 A T GBF1 Silent p.A106A 0.19 TCGA-WE-A8K1-06 10 104175856 104175856 G A PSD Silent p.P225P 0.42 TCGA-WE-A8K1-06 10 105165762 105165762 C T PDCD11 Silent p.S195S 0.22 TCGA-WE-A8K1-06 10 115337846 115337846 G A HABP2 Silent p.R170R 0.26 TCGA-WE-A8K1-06 10 124596445 124596445 G A CUZD1 Missense_Mutation p.S240L 0.17 deleterious(0) possibly_damaging(0.886) TCGA-WE-A8K1-06 10 127569185 127569185 G A DHX32 Missense_Mutation p.S70F 0.27 deleterious(0.03) benign(0.139) TCGA-WE-A8K1-06 10 18276413 18276413 G A SLC39A12 Missense_Mutation p.G368S 0.19 deleterious(0.02) probably_damaging(1) TCGA-WE-A8K1-06 10 21104568 21104568 C T NEBL Missense_Mutation p.E743K 0.21 deleterious(0.03) possibly_damaging(0.619) TCGA-WE-A8K1-06 10 25887513 25887513 C A GPR158 Silent p.A986A 0.15 TCGA-WE-A8K1-06 10 28151533 28151533 G A ARMC4 Missense_Mutation p.R877C 0.16 deleterious(0) probably_damaging(0.957) TCGA-WE-A8K1-06 10 37421200 37421200 G A ANKRD30A Silent p.T125T 0.14 TCGA-WE-A8K1-06 10 45938603 45938603 G A ALOX5 Missense_Mutation p.E464K 0.18 deleterious_low_confidence(0.04) benign(0.019) TCGA-WE-A8K1-06 10 50531724 50531724 G A C10orf71 Silent p.Q378Q 0.23 TCGA-WE-A8K1-06 10 52575795 52575795 C T A1CF Missense_Mutation p.R379K 0.25 tolerated(0.1) possibly_damaging(0.599) TCGA-WE-A8K1-06 10 53921671 53921671 G A PRKG1 Missense_Mutation p.G342R 0.18 tolerated(0.11) benign(0.156) TCGA-WE-A8K1-06 10 61841934 61841934 C T ANK3 Missense_Mutation p.E1442K 0.20 possibly_damaging(0.624) TCGA-WE-A8K1-06 10 61846630 61846630 G A ANK3 Missense_Mutation p.P1185S 0.18 benign(0.011) TCGA-WE-A8K1-06 10 61959912 61959912 C T ANK3 Missense_Mutation p.G489E 0.13 probably_damaging(1) TCGA-WE-A8K1-06 10 61965608 61965608 C T ANK3 Missense_Mutation p.R412Q 0.24 probably_damaging(0.998) TCGA-WE-A8K1-06 10 68687033 68687033 G A LRRTM3 Missense_Mutation p.R120K 0.16 tolerated(1) benign(0.013) TCGA-WE-A8K1-06 10 69881752 69881752 A C MYPN Missense_Mutation p.E186A 0.22 tolerated(0.12) benign(0.103) TCGA-WE-A8K1-06 10 73983737 73983737 G A ANAPC16 Missense_Mutation p.G22D 0.21 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K1-06 10 73983738 73983738 T A ANAPC16 Silent p.G22G 0.20 TCGA-WE-A8K1-06 10 97114715 97114715 G A SORBS1 Missense_Mutation p.S713L 0.13 deleterious(0) probably_damaging(0.97) TCGA-WE-A8K1-06 10 97951723 97951723 C T BLNK 3'UTR 0.21 TCGA-WE-A8K1-06 11 102195525 102195525 C T BIRC3 Silent p.F95F 0.18 TCGA-WE-A8K1-06 11 113661528 113661528 C T ATF4P4 RNA 0.25 TCGA-WE-A8K1-06 11 114453435 114453435 C T NXPE4 Silent p.G135G 0.33 TCGA-WE-A8K1-06 11 116692155 116692155 C T APOA4 Missense_Mutation p.E207K 0.29 tolerated(0.09) benign(0.342) TCGA-WE-A8K1-06 11 118765443 118765443 G A BCL9L 3'UTR 0.33 TCGA-WE-A8K1-06 11 12946554 12946554 C T TEAD1 Silent p.S323S 0.16 TCGA-WE-A8K1-06 11 31115624 31115624 A G DCDC1 Silent p.P697P 0.23 TCGA-WE-A8K1-06 11 45117395 45117395 C T PRDM11 Silent p.I13I 0.14 TCGA-WE-A8K1-06 11 45892078 45892078 G A CRY2 Missense_Mutation p.G536E 0.32 deleterious(0.03) benign(0.323) TCGA-WE-A8K1-06 11 48285606 48285606 C T OR4X1 Missense_Mutation p.S65F 0.17 deleterious(0) probably_damaging(0.954) TCGA-WE-A8K1-06 11 55541798 55541798 G A OR5D13 Silent p.R295R 0.29 TCGA-WE-A8K1-06 11 63141189 63141189 C T SLC22A9 Missense_Mutation p.P194S 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-WE-A8K1-06 11 66106225 66106225 G A BRMS1 Silent p.I220I 0.22 TCGA-WE-A8K1-06 11 66263165 66263165 C T DPP3 Missense_Mutation p.R548W 0.31 tolerated(0.11) probably_damaging(0.944) TCGA-WE-A8K1-06 11 6913347 6913347 G A OR2D2 Missense_Mutation p.P129S 0.10 deleterious(0) probably_damaging(0.993) TCGA-WE-A8K1-06 11 691503 691503 G A DEAF1 Silent p.L129L 0.24 TCGA-WE-A8K1-06 11 7960983 7960983 C T OR10A3 Missense_Mutation p.G29R 0.22 tolerated(0.35) benign(0.027) TCGA-WE-A8K1-06 11 7982099 7982099 G A NLRP10 Missense_Mutation p.P354S 0.21 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K1-06 11 85435122 85435122 G A SYTL2 Missense_Mutation p.S793L 0.20 deleterious(0) probably_damaging(0.967) TCGA-WE-A8K1-06 11 92714928 92714928 C T MTNR1B Missense_Mutation p.S180F 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-WE-A8K1-06 12 106634120 106634120 G A CKAP4 Missense_Mutation p.S164F 0.16 deleterious(0) probably_damaging(0.979) TCGA-WE-A8K1-06 12 113614725 113614725 G A DDX54 Silent p.P224P 0.26 TCGA-WE-A8K1-06 12 122735554 122735554 G A VPS33A Silent p.I192I 0.19 TCGA-WE-A8K1-06 12 123187498 123187498 G A HCAR2 Silent p.R111R 0.18 TCGA-WE-A8K1-06 12 123297936 123297936 C T CCDC62 Silent p.S657S 0.29 TCGA-WE-A8K1-06 12 123297937 123297937 C T CCDC62 Missense_Mutation p.H658Y 0.29 tolerated_low_confidence(1) benign(0.245) TCGA-WE-A8K1-06 12 18858123 18858123 G A PLCZ1 Missense_Mutation p.P281S 0.17 tolerated(0.11) benign(0.038) TCGA-WE-A8K1-06 12 21919308 21919308 G A KCNJ8 Silent p.F208F 0.23 TCGA-WE-A8K1-06 12 32135104 32135104 G A KIAA1551 Silent p.Q405Q 0.18 TCGA-WE-A8K1-06 12 32863929 32863929 G A DNM1L Missense_Mutation p.D146N 0.20 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 12 33559893 33559893 G T SYT10 Missense_Mutation p.P303H 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-WE-A8K1-06 12 34179333 34179333 C T ALG10 Missense_Mutation p.S302F 0.23 deleterious(0.03) possibly_damaging(0.521) TCGA-WE-A8K1-06 12 51675308 51675308 G A BIN2 Missense_Mutation p.S558F 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.553) TCGA-WE-A8K1-06 12 52964612 52964612 G A KRT74 Silent p.I283I 0.26 TCGA-WE-A8K1-06 12 53346568 53346568 G A KRT18 Missense_Mutation p.R412Q 0.29 tolerated(0.42) benign(0.002) TCGA-WE-A8K1-06 12 55614998 55614998 C T OR10A7 Nonsense_Mutation p.Q64* 0.16 TCGA-WE-A8K1-06 12 57005956 57005956 G A BAZ2A Missense_Mutation p.P406S 0.24 tolerated(0.59) possibly_damaging(0.677) TCGA-WE-A8K1-06 12 57348744 57348744 C T RDH16 Missense_Mutation p.G173D 0.30 deleterious(0) benign(0.35) TCGA-WE-A8K1-06 12 63991687 63991687 G A DPY19L2 Missense_Mutation p.R455C 0.20 deleterious(0.01) benign(0.015) TCGA-WE-A8K1-06 12 81110801 81110801 C T MYF5 5'UTR 0.22 TCGA-WE-A8K1-06 12 86373519 86373519 C T MGAT4C Missense_Mutation p.D329N 0.15 tolerated(0.06) possibly_damaging(0.893) TCGA-WE-A8K1-06 13 102366839 102366839 C T ITGBL1 Missense_Mutation p.S444F 0.14 tolerated(0.12) benign(0.128) TCGA-WE-A8K1-06 13 113773271 113773271 C T F7 Silent p.L450L 0.14 TCGA-WE-A8K1-06 13 114806533 114806533 G A RASA3 Silent p.Y105Y 0.22 TCGA-WE-A8K1-06 13 24443478 24443478 G A MIPEP Missense_Mutation p.S299F 0.21 deleterious(0.01) benign(0.396) TCGA-WE-A8K1-06 13 26402264 26402264 C T ATP8A2 Silent p.F896F 0.18 TCGA-WE-A8K1-06 13 29287571 29287571 G A SLC46A3 Silent p.F102F 0.15 TCGA-WE-A8K1-06 13 29599704 29599704 C T MTUS2 Missense_Mutation p.S300L 0.17 tolerated(0.14) benign(0.002) TCGA-WE-A8K1-06 13 39433553 39433553 C T FREM2 Missense_Mutation p.P2449S 0.21 tolerated(0.1) benign(0.433) TCGA-WE-A8K1-06 13 41800645 41800645 G A MTRF1 Missense_Mutation p.R350C 0.19 deleterious(0.04) benign(0.064) TCGA-WE-A8K1-06 13 76445197 76445197 C T C13orf45 5'UTR 0.24 TCGA-WE-A8K1-06 14 107179072 107179072 C T IGHV2-70 Silent p.Q35Q 0.08 TCGA-WE-A8K1-06 14 19553770 19553770 C T POTEG Silent p.G118G 0.05 TCGA-WE-A8K1-06 14 20611984 20611984 A G OR4N5 Silent p.L30L 0.18 TCGA-WE-A8K1-06 14 22279964 22279964 C T TRAV9-1 Silent p.S51S 0.26 TCGA-WE-A8K1-06 14 22321016 22321016 C T TRAV8-3 Silent p.S58S 0.36 TCGA-WE-A8K1-06 14 28734131 28734131 G A BNIP3P1 RNA 0.19 TCGA-WE-A8K1-06 14 52505572 52505572 G A NID2 Missense_Mutation p.S717F 0.11 deleterious(0) benign(0.094) TCGA-WE-A8K1-06 14 67859529 67859529 G A PLEK2 Silent p.F173F 0.26 TCGA-WE-A8K1-06 14 73727455 73727455 G A PAPLN Missense_Mutation p.G648E 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 14 75017949 75017949 G A LTBP2 Silent p.L502L 0.20 TCGA-WE-A8K1-06 14 76156612 76156612 T G TTLL5 Missense_Mutation p.F150C 0.23 deleterious(0) possibly_damaging(0.834) TCGA-WE-A8K1-06 14 76437990 76437990 T A TGFB3 Missense_Mutation p.N142Y 0.20 deleterious(0) probably_damaging(0.965) TCGA-WE-A8K1-06 14 81610138 81610138 C T TSHR Missense_Mutation p.A579V 0.16 deleterious(0) possibly_damaging(0.76) TCGA-WE-A8K1-06 14 86089008 86089008 C T FLRT2 Missense_Mutation p.P384S 0.24 tolerated(0.19) benign(0.001) TCGA-WE-A8K1-06 14 94545680 94545680 G A DDX24 Missense_Mutation p.P137S 0.22 tolerated(0.56) benign(0.004) TCGA-WE-A8K1-06 15 101031087 101031087 G A CERS3 Nonsense_Mutation p.R75* 0.18 TCGA-WE-A8K1-06 15 20651268 20651268 C T HERC2P3 RNA 0.20 TCGA-WE-A8K1-06 15 25448406 25448406 A G SNORD115-18 RNA 0.19 TCGA-WE-A8K1-06 15 33825540 33825540 C T RYR3 Missense_Mutation p.S128F 0.38 probably_damaging(0.99) TCGA-WE-A8K1-06 15 33895522 33895522 C T RYR3 Silent p.D707D 0.18 TCGA-WE-A8K1-06 15 48626681 48626681 C T DUT Missense_Mutation p.P163S 0.20 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K1-06 15 50528257 50528257 C T SLC27A2 Silent p.I609I 0.20 TCGA-WE-A8K1-06 15 52402100 52402100 A T BCL2L10 Missense_Mutation p.F187Y 0.22 deleterious(0.01) probably_damaging(0.93) TCGA-WE-A8K1-06 15 55965708 55965708 C T PRTG Silent p.G571G 0.16 TCGA-WE-A8K1-06 15 65490020 65490020 C T CILP Silent p.R868R 0.17 TCGA-WE-A8K1-06 15 69113115 69113115 G C ANP32A 5'UTR 0.21 TCGA-WE-A8K1-06 15 71953006 71953006 C T THSD4 Silent p.V430V 0.17 TCGA-WE-A8K1-06 15 72190967 72190967 G A MYO9A Missense_Mutation p.R1293C 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K1-06 15 75692395 75692395 C T SIN3A Missense_Mutation p.D614N 0.18 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 15 85406120 85406120 G A ALPK3 Missense_Mutation p.G1664S 0.19 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K1-06 16 10574766 10574766 C A ATF7IP2 Nonsense_Mutation p.S527* 0.18 TCGA-WE-A8K1-06 16 14339471 14339471 C T MKL2 Missense_Mutation p.P389L 0.20 tolerated(0.5) possibly_damaging(0.836) TCGA-WE-A8K1-06 16 18826936 18826936 G A SMG1 Missense_Mutation p.P3447L 0.25 tolerated(0.08) benign(0.057) TCGA-WE-A8K1-06 16 18826937 18826937 G A SMG1 Missense_Mutation p.P3447S 0.24 tolerated(0.46) benign(0.057) TCGA-WE-A8K1-06 16 20043642 20043642 G T GPR139 Silent p.T159T 0.17 TCGA-WE-A8K1-06 16 20999358 20999358 A G DNAH3 Missense_Mutation p.S2211P 0.17 deleterious(0.01) possibly_damaging(0.857) TCGA-WE-A8K1-06 16 23716355 23716355 A G ERN2 Missense_Mutation p.W283R 0.16 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 16 27489836 27489836 T C GTF3C1 Missense_Mutation p.I1405V 0.19 tolerated(0.06) benign(0.395) TCGA-WE-A8K1-06 16 29888207 29888207 G A SEZ6L2 Silent p.S658S 0.20 TCGA-WE-A8K1-06 16 3025616 3025616 G A PKMYT1 Silent p.P192P 0.18 TCGA-WE-A8K1-06 16 3640600 3640600 T C SLX4 Silent p.E1013E 0.23 TCGA-WE-A8K1-06 16 67858506 67858506 C T TSNAXIP1 Missense_Mutation p.R114W 0.24 deleterious(0) probably_damaging(0.983) TCGA-WE-A8K1-06 16 69354987 69354987 G A VPS4A Silent p.E295E 0.27 TCGA-WE-A8K1-06 16 70841766 70841766 C T HYDIN Missense_Mutation p.G5028D 0.20 probably_damaging(0.982) TCGA-WE-A8K1-06 16 71609826 71609826 G A TAT Silent p.I113I 0.28 TCGA-WE-A8K1-06 16 72094892 72094892 G A HP 3'UTR 0.19 TCGA-WE-A8K1-06 16 81047759 81047759 A T CENPN Missense_Mutation p.S64C 0.24 deleterious(0.03) possibly_damaging(0.762) TCGA-WE-A8K1-06 16 87365000 87365000 G A FBXO31 Missense_Mutation p.S505F 0.30 tolerated(0.58) probably_damaging(0.989) TCGA-WE-A8K1-06 17 10209806 10209806 C T MYH13 Silent p.G1812G 0.35 TCGA-WE-A8K1-06 17 11593438 11593438 G A DNAH9 Missense_Mutation p.M1433I 0.36 benign(0.07) TCGA-WE-A8K1-06 17 1554789 1554789 G A PRPF8 Missense_Mutation p.P2190L 0.32 deleterious(0.01) probably_damaging(0.925) TCGA-WE-A8K1-06 17 18565275 18565275 C T ZNF286B Missense_Mutation p.R515K 0.30 tolerated(0.08) benign(0.004) TCGA-WE-A8K1-06 17 1960029 1960029 G A HIC1 Silent p.L34L 0.20 TCGA-WE-A8K1-06 17 27028604 27028604 T A SUPT6H Silent p.A1714A 0.19 TCGA-WE-A8K1-06 17 35913658 35913658 G A SYNRG Missense_Mutation p.P723S 0.14 deleterious_low_confidence(0.05) benign(0.014) TCGA-WE-A8K1-06 17 3662746 3662746 G A ITGAE Silent p.I272I 0.32 TCGA-WE-A8K1-06 17 38926062 38926062 C T KRT26 Missense_Mutation p.E305K 0.20 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 17 40764104 40764104 C T TUBG1 Silent p.I114I 0.35 TCGA-WE-A8K1-06 17 42289033 42289033 G A UBTF Nonsense_Mutation p.Q330* 0.35 TCGA-WE-A8K1-06 17 44249049 44249049 A C KANSL1 Missense_Mutation p.V154G 0.09 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 17 4685877 4685877 G A TM4SF5 Missense_Mutation p.R113Q 0.31 tolerated(0.57) benign(0.019) TCGA-WE-A8K1-06 17 48274424 48274424 C T COL1A1 Missense_Mutation p.G251S 0.15 unknown(0) TCGA-WE-A8K1-06 17 48669328 48669328 C T CACNA1G Missense_Mutation p.L929F 0.08 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 17 48761077 48761077 T C ABCC3 Missense_Mutation p.V1305A 0.38 tolerated(0.43) possibly_damaging(0.881) TCGA-WE-A8K1-06 17 52991126 52991126 C T TOM1L1 Silent p.F130F 0.38 TCGA-WE-A8K1-06 17 54978828 54978828 C T TRIM25 Missense_Mutation p.E347K 0.22 tolerated(0.8) benign(0.028) TCGA-WE-A8K1-06 17 57679965 57679965 A T DHX40 Missense_Mutation p.N630I 0.15 deleterious(0) probably_damaging(0.98) TCGA-WE-A8K1-06 17 61660934 61660934 C T DCAF7 Intron 0.38 TCGA-WE-A8K1-06 17 66303650 66303650 C T ARSG Silent p.L6L 0.38 TCGA-WE-A8K1-06 17 71228420 71228420 C T FAM104A Missense_Mutation p.G9E 0.17 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K1-06 17 71228421 71228421 C T FAM104A Missense_Mutation p.G9R 0.17 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K1-06 17 72443210 72443210 C T GPRC5C 3'UTR 0.18 TCGA-WE-A8K1-06 17 72850897 72850897 G T GRIN2C Missense_Mutation p.S112Y 0.34 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 17 73016682 73016682 G A ICT1 Missense_Mutation p.D156N 0.39 tolerated(0.23) benign(0.12) TCGA-WE-A8K1-06 17 74006400 74006400 G A EVPL Silent p.F962F 0.32 TCGA-WE-A8K1-06 17 76482203 76482203 G A DNAH17 Nonsense_Mutation p.R2358* 0.11 TCGA-WE-A8K1-06 17 7662283 7662283 G A DNAH2 Silent p.L763L 0.23 TCGA-WE-A8K1-06 17 78765289 78765289 C T RPTOR Silent p.V290V 0.18 TCGA-WE-A8K1-06 17 80016019 80016019 G A DUS1L Missense_Mutation p.S465F 0.24 deleterious_low_confidence(0.05) benign(0.181) TCGA-WE-A8K1-06 18 19203813 19203813 C T SNRPD1 Missense_Mutation p.R66W 0.20 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 18 28712550 28712550 C T DSC1 Missense_Mutation p.G740E 0.21 deleterious(0) probably_damaging(0.971) TCGA-WE-A8K1-06 18 28898206 28898206 G A DSG1 5'UTR 0.17 TCGA-WE-A8K1-06 18 33691178 33691178 G A SLC39A6 Silent p.T653T 0.16 TCGA-WE-A8K1-06 18 78005190 78005190 G A PARD6G Silent p.Y14Y 0.17 TCGA-WE-A8K1-06 19 12874514 12874514 G A HOOK2 Nonsense_Mutation p.R636* 0.34 TCGA-WE-A8K1-06 19 15164428 15164428 G A CASP14 Missense_Mutation p.D55N 0.78 tolerated(0.16) benign(0.094) TCGA-WE-A8K1-06 19 15272355 15272355 A T NOTCH3 Missense_Mutation p.S2028R 0.95 deleterious(0.04) possibly_damaging(0.467) TCGA-WE-A8K1-06 19 16006353 16006353 G A CYP4F2 Silent p.C102C 0.12 TCGA-WE-A8K1-06 19 16045162 16045162 C T CYP4F11 Nonsense_Mutation p.W19* 0.13 TCGA-WE-A8K1-06 19 16045163 16045163 C T CYP4F11 Nonsense_Mutation p.W19* 0.13 TCGA-WE-A8K1-06 19 18235452 18235452 G A MAST3 Missense_Mutation p.E287K 0.42 deleterious(0.01) possibly_damaging(0.759) TCGA-WE-A8K1-06 19 19408015 19408015 G A SUGP1 Silent p.A342A 0.23 TCGA-WE-A8K1-06 19 22379510 22379510 C T ZNF676 5'UTR 0.23 TCGA-WE-A8K1-06 19 42213673 42213673 G A CEA Missense_Mutation p.E47K 0.23 deleterious(0.03) benign(0.44) TCGA-WE-A8K1-06 19 42526185 42526185 G A GRIK5 Silent p.S537S 0.25 TCGA-WE-A8K1-06 19 43428938 43428938 G A PSG7 3'UTR 0.20 TCGA-WE-A8K1-06 19 43702206 43702206 C T PSG4 Missense_Mutation p.E218K 0.20 deleterious(0) probably_damaging(0.966) TCGA-WE-A8K1-06 19 44662073 44662073 G T ZNF234 Missense_Mutation p.R635L 0.13 tolerated(0.64) possibly_damaging(0.807) TCGA-WE-A8K1-06 19 45476342 45476342 A T CLPTM1 Splice_Site p.X62_splice 0.15 TCGA-WE-A8K1-06 19 49079100 49079100 G A SULT2B1 Intron 0.20 TCGA-WE-A8K1-06 19 49901359 49901359 C T CCDC155 Silent p.R196R 0.27 TCGA-WE-A8K1-06 19 49901360 49901360 C T CCDC155 Missense_Mutation p.L197F 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 19 52249172 52249172 G A FPR1 3'UTR 0.15 TCGA-WE-A8K1-06 19 52327313 52327313 G A FPR3 Missense_Mutation p.M104I 0.38 tolerated(0.61) benign(0.01) TCGA-WE-A8K1-06 19 52327766 52327766 C T FPR3 Silent p.F255F 0.41 TCGA-WE-A8K1-06 19 52471850 52471850 G A ZNF350 Silent p.I73I 0.26 TCGA-WE-A8K1-06 19 52659195 52659195 G A ZNF836 Missense_Mutation p.P581S 0.31 tolerated(0.05) probably_damaging(0.99) TCGA-WE-A8K1-06 19 55424092 55424092 C T NCR1 Silent p.L256L 0.41 TCGA-WE-A8K1-06 19 56243537 56243537 C T NLRP9 Missense_Mutation p.E554K 0.31 deleterious(0.01) possibly_damaging(0.678) TCGA-WE-A8K1-06 19 56481914 56481914 G A NLRP8 Missense_Mutation p.E796K 0.17 deleterious(0.02) benign(0.158) TCGA-WE-A8K1-06 19 8842202 8842202 A G OR2Z1 Missense_Mutation p.D271G 0.26 deleterious(0) possibly_damaging(0.865) TCGA-WE-A8K1-06 19 8976274 8976274 C T MUC16 Missense_Mutation p.S14185N 0.38 probably_damaging(0.999) TCGA-WE-A8K1-06 19 9066773 9066773 C T MUC16 Silent p.V6891V 0.21 TCGA-WE-A8K1-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.33 tolerated(0.06) benign(0.006) TCGA-WE-A8K1-06 1 116937851 116937851 C T ATP1A1 Missense_Mutation p.P594S 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 1 119467274 119467274 C T TBX15 Missense_Mutation p.G124R 0.12 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 1 119935251 119935251 G A HAO2 Missense_Mutation p.G314D 0.34 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 1 1421571 1421571 C T ATAD3B Silent p.L349L 0.28 TCGA-WE-A8K1-06 1 152187517 152187517 G A HRNR Silent p.S2196S 0.13 TCGA-WE-A8K1-06 1 152191839 152191839 C T HRNR Missense_Mutation p.G756R 0.51 unknown(0) TCGA-WE-A8K1-06 1 152276118 152276118 G A FLG Silent p.H3748H 0.51 TCGA-WE-A8K1-06 1 152276615 152276615 C T FLG Missense_Mutation p.E3583K 0.16 unknown(0) TCGA-WE-A8K1-06 1 152286781 152286781 C T FLG Missense_Mutation p.G194E 0.31 benign(0.13) TCGA-WE-A8K1-06 1 152749018 152749018 G T LCE1F Silent p.G57G 0.07 TCGA-WE-A8K1-06 1 153932676 153932676 G A SLC39A1 Silent p.I291I 0.59 TCGA-WE-A8K1-06 1 1560529 1560529 G T MIB2 Missense_Mutation p.G344C 0.09 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K1-06 1 158325805 158325805 A G CD1E Missense_Mutation p.T272A 0.61 deleterious(0.01) probably_damaging(0.915) TCGA-WE-A8K1-06 1 158389761 158389761 G A OR10K2 Missense_Mutation p.S299L 0.51 tolerated(0.4) benign(0.005) TCGA-WE-A8K1-06 1 158819019 158819019 G A MNDA Missense_Mutation p.V406I 0.05 tolerated_low_confidence(0.86) benign(0.001) TCGA-WE-A8K1-06 1 16264444 16264444 C T SPEN Silent p.I3549I 0.14 TCGA-WE-A8K1-06 1 166896374 166896374 G A ILDR2 Silent p.S308S 0.50 TCGA-WE-A8K1-06 1 169696952 169696952 C T SELE Missense_Mutation p.E466K 0.54 tolerated(0.88) benign(0.034) TCGA-WE-A8K1-06 1 171178096 171178096 C T FMO2 3'UTR 0.52 TCGA-WE-A8K1-06 1 17552372 17552372 C T PADI1 Missense_Mutation p.H159Y 0.20 tolerated(0.42) benign(0.124) TCGA-WE-A8K1-06 1 181727901 181727901 C T CACNA1E Missense_Mutation p.S1501F 0.34 deleterious(0) possibly_damaging(0.485) TCGA-WE-A8K1-06 1 2082271 2082271 T C PRKCZ Missense_Mutation p.S244P 0.13 tolerated(0.1) benign(0.008) TCGA-WE-A8K1-06 1 212799595 212799595 C T FAM71A Missense_Mutation p.S459F 0.44 deleterious(0.03) benign(0.34) TCGA-WE-A8K1-06 1 215848651 215848651 C T USH2A Missense_Mutation p.G4201E 0.23 benign(0.417) TCGA-WE-A8K1-06 1 222802528 222802528 C T MIA3 Missense_Mutation p.P656S 0.46 tolerated(1) benign(0) TCGA-WE-A8K1-06 1 233394900 233394900 C T PCNXL2 Silent p.Q236Q 0.35 TCGA-WE-A8K1-06 1 233482327 233482327 G A MLK4 Silent p.V315V 0.25 TCGA-WE-A8K1-06 1 248512109 248512109 C T OR14C36 Silent p.L11L 0.13 TCGA-WE-A8K1-06 1 32042836 32042836 G A TINAGL1 Silent p.R29R 0.37 TCGA-WE-A8K1-06 1 32198162 32198162 C T BAI2 Missense_Mutation p.E1226K 0.29 deleterious(0.05) probably_damaging(0.994) TCGA-WE-A8K1-06 1 34033323 34033323 G A CSMD2 Silent p.I2727I 0.27 TCGA-WE-A8K1-06 1 3542344 3542344 A G TPRG1L Missense_Mutation p.K121E 0.29 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K1-06 1 35480420 35480420 G A ZMYM6 Missense_Mutation p.H225Y 0.31 tolerated(0.12) benign(0.032) TCGA-WE-A8K1-06 1 36385162 36385162 C T AGO1 Missense_Mutation p.A843V 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8K1-06 1 41514409 41514409 G A SCMH1 Missense_Mutation p.T410I 0.29 tolerated(0.11) possibly_damaging(0.756) TCGA-WE-A8K1-06 1 52850357 52850357 C G ORC1 Missense_Mutation p.K540N 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 1 55118866 55118866 C T MROH7 Silent p.I89I 0.23 TCGA-WE-A8K1-06 1 55166974 55166974 C T MROH7 Silent p.I1088I 0.16 TCGA-WE-A8K1-06 1 56977796 56977796 C T PPAP2B Missense_Mutation p.R221Q 0.10 tolerated(0.14) benign(0.105) TCGA-WE-A8K1-06 1 57159438 57159438 G A PRKAA2 Missense_Mutation p.G159E 0.24 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K1-06 1 62329970 62329970 G A INADL Missense_Mutation p.G834R 0.28 deleterious(0.04) benign(0.327) TCGA-WE-A8K1-06 1 62329971 62329971 G A INADL Missense_Mutation p.G834E 0.28 tolerated(0.07) possibly_damaging(0.901) TCGA-WE-A8K1-06 1 7797379 7797379 C T CAMTA1 Missense_Mutation p.A1136V 0.15 deleterious(0) benign(0.345) TCGA-WE-A8K1-06 1 78272754 78272754 C T FAM73A Missense_Mutation p.P202L 0.16 deleterious(0) probably_damaging(0.988) TCGA-WE-A8K1-06 20 2380234 2380234 G A TGM6 Missense_Mutation p.V234M 0.19 deleterious(0) probably_damaging(0.957) TCGA-WE-A8K1-06 20 31625472 31625472 C T BPIFB6 Silent p.L258L 0.28 TCGA-WE-A8K1-06 20 33539534 33539534 G A GSS Missense_Mutation p.S41F 0.19 deleterious(0) possibly_damaging(0.9) TCGA-WE-A8K1-06 20 35769646 35769646 G A MROH8 Silent p.T496T 0.31 TCGA-WE-A8K1-06 20 3725658 3725658 T A HSPA12B Missense_Mutation p.Y126N 0.25 deleterious(0) probably_damaging(0.966) TCGA-WE-A8K1-06 20 4164155 4164155 C T SMOX Missense_Mutation p.P462S 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-WE-A8K1-06 20 43933141 43933141 C T MATN4 Missense_Mutation p.A124T 0.20 probably_damaging(0.994) TCGA-WE-A8K1-06 20 4705609 4705609 G A PRND Missense_Mutation p.E138K 0.17 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-WE-A8K1-06 20 57828183 57828183 G A ZNF831 Missense_Mutation p.R1393Q 0.23 tolerated(0.65) benign(0.03) TCGA-WE-A8K1-06 20 6091034 6091034 G A FERMT1 Silent p.L219L 0.20 TCGA-WE-A8K1-06 20 61959771 61959771 C T COL20A1 Silent p.P1234P 0.26 TCGA-WE-A8K1-06 21 10906865 10906865 G A TPTE 3'UTR 0.10 TCGA-WE-A8K1-06 21 18924160 18924160 G T CXADR Missense_Mutation p.D102Y 0.13 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 21 35281510 35281510 G A AP000304.12 Silent p.I17I 0.21 TCGA-WE-A8K1-06 21 46086678 46086678 G A KRTAP12-2 Silent p.S42S 0.17 TCGA-WE-A8K1-06 22 20920783 20920783 A G MED15 Silent p.R240R 0.31 TCGA-WE-A8K1-06 2 105896933 105896933 C A TGFBRAP1 Missense_Mutation p.A457S 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-WE-A8K1-06 2 108487243 108487243 C T RGPD4 Missense_Mutation p.S928L 0.22 deleterious(0.03) benign(0.012) TCGA-WE-A8K1-06 2 108604633 108604633 C T SLC5A7 Silent p.L8L 0.18 TCGA-WE-A8K1-06 2 15674707 15674707 G A NBAS Missense_Mutation p.P236S 0.18 tolerated(0.36) benign(0.04) TCGA-WE-A8K1-06 2 166535217 166535217 C T CSRNP3 Missense_Mutation p.R238C 0.18 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K1-06 2 167089910 167089910 G A SCN9A Silent p.S1277S 0.10 TCGA-WE-A8K1-06 2 168101857 168101857 C T XIRP2 Nonsense_Mutation p.Q1319* 0.16 TCGA-WE-A8K1-06 2 168114579 168114579 G A XIRP2 3'UTR 0.21 TCGA-WE-A8K1-06 2 174231894 174231894 C T CDCA7 Missense_Mutation p.P401L 0.18 deleterious(0) probably_damaging(0.959) TCGA-WE-A8K1-06 2 175246463 175246463 G A CIR1 Silent p.F70F 0.18 TCGA-WE-A8K1-06 2 179398616 179398616 C T TTN Silent p.K34242K 0.17 TCGA-WE-A8K1-06 2 179408164 179408164 A T TTN Missense_Mutation p.V32179E 0.23 TCGA-WE-A8K1-06 2 179476260 179476260 C T TTN Nonsense_Mutation p.W16899* 0.11 TCGA-WE-A8K1-06 2 179642648 179642648 C T TTN Silent p.R1421R 0.18 TCGA-WE-A8K1-06 2 185802800 185802800 G A ZNF804A Missense_Mutation p.G893S 0.11 tolerated(0.36) benign(0.151) TCGA-WE-A8K1-06 2 186671899 186671899 G A FSIP2 Missense_Mutation p.E6045K 0.16 probably_damaging(0.998) TCGA-WE-A8K1-06 2 192701440 192701440 C T SDPR Missense_Mutation p.E163K 0.21 tolerated(0.06) possibly_damaging(0.789) TCGA-WE-A8K1-06 2 196801363 196801363 C T DNAH7 Missense_Mutation p.E1078K 0.25 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K1-06 2 198641828 198641828 G A BOLL Silent p.F89F 0.14 TCGA-WE-A8K1-06 2 206869923 206869923 C G INO80D Missense_Mutation p.Q751H 0.20 tolerated_low_confidence(0.23) benign(0.004) TCGA-WE-A8K1-06 2 208631600 208631600 G A FZD5 3'UTR 0.30 TCGA-WE-A8K1-06 2 212285327 212285327 G A ERBB4 Missense_Mutation p.R992C 0.12 tolerated(0.17) benign(0.014) TCGA-WE-A8K1-06 2 212812323 212812323 C T ERBB4 Missense_Mutation p.G85S 0.18 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 2 219301966 219301966 G A VIL1 Silent p.V697V 0.20 TCGA-WE-A8K1-06 2 220161761 220161761 T C PTPRN Missense_Mutation p.T728A 0.20 tolerated(0.27) benign(0) TCGA-WE-A8K1-06 2 220164721 220164721 G A PTPRN Silent p.I474I 0.19 TCGA-WE-A8K1-06 2 230231738 230231738 G A DNER Silent p.I651I 0.21 TCGA-WE-A8K1-06 2 233322730 233322730 G A ALPI Silent p.T293T 0.27 TCGA-WE-A8K1-06 2 238245084 238245084 T A COL6A3 Missense_Mutation p.T2887S 0.21 unknown(0) TCGA-WE-A8K1-06 2 238245085 238245085 T A COL6A3 Silent p.T2886T 0.20 TCGA-WE-A8K1-06 2 238277443 238277443 C T COL6A3 Missense_Mutation p.D1555N 0.23 probably_damaging(0.997) TCGA-WE-A8K1-06 2 27428291 27428291 C T SLC5A6 Missense_Mutation p.G221R 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 2 27556601 27556601 G A GTF3C2 Silent p.P551P 0.27 TCGA-WE-A8K1-06 2 37483853 37483854 - AT PRKD3 Frame_Shift_Ins p.A789Mfs*21 0.13 TCGA-WE-A8K1-06 2 46597035 46597035 G C EPAS1 Silent p.A283A 0.30 TCGA-WE-A8K1-06 2 68384750 68384750 G A WDR92 5'Flank 0.30 TCGA-WE-A8K1-06 2 68385532 68385532 G A PNO1 Silent p.R76R 0.17 TCGA-WE-A8K1-06 2 74460610 74460610 G A SLC4A5 Silent p.P838P 0.16 TCGA-WE-A8K1-06 3 121238889 121238889 G A POLQ Missense_Mutation p.R433C 0.27 deleterious(0) probably_damaging(0.973) TCGA-WE-A8K1-06 3 121981057 121981057 G A CASR Missense_Mutation p.R392Q 0.21 tolerated(0.14) possibly_damaging(0.526) TCGA-WE-A8K1-06 3 138119379 138119379 C T MRAS Missense_Mutation p.P151S 0.28 tolerated(0.11) benign(0.039) TCGA-WE-A8K1-06 3 13896211 13896211 C T WNT7A Missense_Mutation p.D130N 0.12 tolerated(0.66) benign(0.004) TCGA-WE-A8K1-06 3 139076733 139076733 T C COPB2 Missense_Mutation p.N898S 0.18 deleterious_low_confidence(0.04) benign(0.149) TCGA-WE-A8K1-06 3 151055654 151055654 C T P2RY12 Missense_Mutation p.R327K 0.23 tolerated(0.86) benign(0.001) TCGA-WE-A8K1-06 3 15115577 15115577 G A ZFYVE20 Silent p.P689P 0.16 TCGA-WE-A8K1-06 3 15115578 15115578 G A ZFYVE20 Missense_Mutation p.P689L 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K1-06 3 164697078 164697078 G A SI 3'UTR 0.12 TCGA-WE-A8K1-06 3 167183367 167183367 C T SERPINI2 Silent p.Q191Q 0.30 TCGA-WE-A8K1-06 3 167218012 167218012 G A WDR49 Missense_Mutation p.P635L 0.26 deleterious(0.03) benign(0.079) TCGA-WE-A8K1-06 3 167254771 167254771 C T WDR49 Missense_Mutation p.R262Q 0.29 deleterious(0) benign(0.269) TCGA-WE-A8K1-06 3 168810844 168810844 C T MECOM Silent p.A899A 0.20 TCGA-WE-A8K1-06 3 169639054 169639054 C T SAMD7 Missense_Mutation p.P47S 0.12 tolerated(0.46) benign(0.15) TCGA-WE-A8K1-06 3 183777427 183777427 C T HTR3C Silent p.I308I 0.18 TCGA-WE-A8K1-06 3 184043126 184043126 C T EIF4G1 Missense_Mutation p.R983C 0.11 deleterious(0) probably_damaging(0.941) TCGA-WE-A8K1-06 3 190338123 190338123 C T IL1RAP Silent p.F199F 0.13 TCGA-WE-A8K1-06 3 193036884 193036884 G A ATP13A5 Silent p.F643F 0.10 TCGA-WE-A8K1-06 3 36780054 36780054 G A DCLK3 Missense_Mutation p.R33C 0.11 deleterious(0.01) benign(0.005) TCGA-WE-A8K1-06 3 36875063 36875063 G A TRANK1 Missense_Mutation p.S1960F 0.59 tolerated(0.12) benign(0.009) TCGA-WE-A8K1-06 3 39229709 39229709 C T XIRP1 Missense_Mutation p.G410S 0.17 tolerated(0.18) benign(0.042) TCGA-WE-A8K1-06 3 45776826 45776826 G A SACM1L Silent p.Q400Q 0.16 TCGA-WE-A8K1-06 3 50220945 50220945 A G SEMA3F Missense_Mutation p.N394S 0.50 tolerated(0.08) possibly_damaging(0.531) TCGA-WE-A8K1-06 3 52853422 52853422 G A ITIH4 Silent p.R688R 0.11 TCGA-WE-A8K1-06 3 54914884 54914884 G A CACNA2D3 Missense_Mutation p.E636K 0.17 deleterious(0.01) benign(0.443) TCGA-WE-A8K1-06 3 55514936 55514936 C T WNT5A Missense_Mutation p.G6E 0.22 tolerated_low_confidence(0.16) benign(0.003) TCGA-WE-A8K1-06 3 56468745 56468745 G A ERC2 Silent p.A97A 0.45 TCGA-WE-A8K1-06 3 73433803 73433803 G A PDZRN3 Silent p.I638I 0.11 TCGA-WE-A8K1-06 3 93603599 93603599 C T PROS1 Missense_Mutation p.G489R 0.17 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K1-06 4 126240164 126240164 A T FAT4 Silent p.V866V 0.17 TCGA-WE-A8K1-06 4 144378865 144378865 C T GAB1 Missense_Mutation p.H540Y 0.19 tolerated_low_confidence(1) benign(0.201) TCGA-WE-A8K1-06 4 146046196 146046196 A T ABCE1 Silent p.T565T 0.25 TCGA-WE-A8K1-06 4 155508719 155508719 A T FGA Missense_Mutation p.I152N 0.30 deleterious(0) possibly_damaging(0.82) TCGA-WE-A8K1-06 4 155749213 155749213 C T RBM46 Silent p.F532F 0.20 TCGA-WE-A8K1-06 4 158057806 158057806 C T GLRB Silent p.I161I 0.21 TCGA-WE-A8K1-06 4 183674673 183674673 T A TENM3 Missense_Mutation p.N1311K 0.27 tolerated(0.06) benign(0.02) TCGA-WE-A8K1-06 4 25005419 25005419 G A LGI2 Missense_Mutation p.T431I 0.20 deleterious(0.01) benign(0.048) TCGA-WE-A8K1-06 4 37903742 37903742 G A TBC1D1 Missense_Mutation p.R9K 0.21 tolerated_low_confidence(0.63) benign(0.001) TCGA-WE-A8K1-06 4 40337918 40337918 C T CHRNA9 Missense_Mutation p.R47C 0.23 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K1-06 4 42895514 42895514 G A GRXCR1 Silent p.Q77Q 0.18 TCGA-WE-A8K1-06 4 55960987 55960987 C T KDR Missense_Mutation p.D985N 0.20 tolerated(0.26) probably_damaging(0.951) TCGA-WE-A8K1-06 4 57217579 57217579 T G AASDH Missense_Mutation p.I541L 0.27 tolerated(0.74) benign(0.003) TCGA-WE-A8K1-06 4 69796307 69796307 C T UGT2A3 Missense_Mutation p.E421K 0.20 tolerated(0.34) benign(0.021) TCGA-WE-A8K1-06 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.25 tolerated(0.16) probably_damaging(0.975) TCGA-WE-A8K1-06 4 83278026 83278026 G A HNRNPD Missense_Mutation p.S259L 0.25 deleterious(0.02) benign(0.034) TCGA-WE-A8K1-06 4 8608532 8608532 C T CPZ Silent p.F325F 0.29 TCGA-WE-A8K1-06 4 87752972 87752972 C T SLC10A6 Nonsense_Mutation p.W186* 0.14 TCGA-WE-A8K1-06 4 89199498 89199498 T G PPM1K Missense_Mutation p.S80R 0.24 deleterious(0.05) benign(0.321) TCGA-WE-A8K1-06 4 94032075 94032075 C T GRID2 Missense_Mutation p.P236S 0.19 deleterious(0.02) probably_damaging(0.933) TCGA-WE-A8K1-06 5 10407293 10407293 C T MARCH6 Missense_Mutation p.P511L 0.19 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 5 11397191 11397191 G A CTNND2 Silent p.L188L 0.25 TCGA-WE-A8K1-06 5 1244383 1244383 G A SLC6A18 Missense_Mutation p.G464E 0.23 deleterious(0) probably_damaging(0.911) TCGA-WE-A8K1-06 5 131302122 131302122 C T ACSL6 Missense_Mutation p.G567E 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 5 140481526 140481526 G A PCDHB3 Silent p.L431L 0.26 TCGA-WE-A8K1-06 5 140562111 140562111 G A PCDHB16 5'UTR 0.14 TCGA-WE-A8K1-06 5 140594041 140594041 G A PCDHB13 Missense_Mutation p.E116K 0.28 deleterious_low_confidence(0.04) benign(0.004) TCGA-WE-A8K1-06 5 156890158 156890158 G A NIPAL4 Missense_Mutation p.D94N 0.23 tolerated(0.44) benign(0.003) TCGA-WE-A8K1-06 5 160721352 160721352 T C GABRB2 Silent p.G425G 0.21 TCGA-WE-A8K1-06 5 168250271 168250271 C T SLIT3 Missense_Mutation p.R208Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K1-06 5 174919239 174919239 G A SFXN1 Missense_Mutation p.E45K 0.26 tolerated(0.07) benign(0.108) TCGA-WE-A8K1-06 5 35065934 35065934 C T PRLR Missense_Mutation p.D376N 0.12 tolerated(0.12) benign(0) TCGA-WE-A8K1-06 5 35646848 35646848 C T SPEF2 Missense_Mutation p.S222L 0.18 tolerated(0.15) possibly_damaging(0.603) TCGA-WE-A8K1-06 5 36153040 36153040 T G SKP2 Missense_Mutation p.L59R 0.22 tolerated(0.19) benign(0.01) TCGA-WE-A8K1-06 5 42718672 42718672 G A GHR Missense_Mutation p.E355K 0.16 tolerated(0.06) probably_damaging(0.991) TCGA-WE-A8K1-06 5 54327450 54327450 G A GZMK Missense_Mutation p.D208N 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 5 55195954 55195955 - A IL31RA Frame_Shift_Ins p.S357Ifs*6 0.10 TCGA-WE-A8K1-06 5 79032713 79032713 C T CMYA5 Missense_Mutation p.P2709S 0.16 unknown(0) TCGA-WE-A8K1-06 5 79734503 79734503 A T ZFYVE16 Nonsense_Mutation p.K667* 0.12 TCGA-WE-A8K1-06 5 90050900 90050900 C T GPR98 Silent p.V3826V 0.17 TCGA-WE-A8K1-06 5 96358081 96358081 G A LNPEP Silent p.E818E 0.11 TCGA-WE-A8K1-06 6 111982858 111982858 G A FYN 3'UTR 0.30 TCGA-WE-A8K1-06 6 117215154 117215154 C T RFX6 Missense_Mutation p.H191Y 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-WE-A8K1-06 6 127796448 127796448 G A SOGA3 Missense_Mutation p.S908F 0.17 deleterious(0) probably_damaging(0.915) TCGA-WE-A8K1-06 6 131973700 131973700 A T ENPP3 Missense_Mutation p.N99I 0.24 deleterious(0) possibly_damaging(0.878) TCGA-WE-A8K1-06 6 138601194 138601194 G A KIAA1244 Nonsense_Mutation p.W785* 0.12 TCGA-WE-A8K1-06 6 146126004 146126004 G A FBXO30 Missense_Mutation p.P513L 0.16 tolerated(0.06) benign(0.064) TCGA-WE-A8K1-06 6 151674364 151674364 C T AKAP12 Missense_Mutation p.S1613L 0.07 tolerated(0.09) benign(0.003) TCGA-WE-A8K1-06 6 152623035 152623035 G T SYNE1 Missense_Mutation p.P5837H 0.16 possibly_damaging(0.906) TCGA-WE-A8K1-06 6 152711505 152711505 T C SYNE1 Missense_Mutation p.N2696S 0.17 benign(0.014) TCGA-WE-A8K1-06 6 158924576 158924576 C A TULP4 Missense_Mutation p.P1294Q 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8K1-06 6 30114963 30114963 G A TRIM40 Missense_Mutation p.E186K 0.27 tolerated(0.47) benign(0.01) TCGA-WE-A8K1-06 6 31110283 31110283 G A CCHCR1 3'UTR 0.20 TCGA-WE-A8K1-06 6 32016250 32016250 A G TNXB 5'Flank 0.33 TCGA-WE-A8K1-06 6 32053645 32053645 C T TNXB Silent p.G1010G 0.24 TCGA-WE-A8K1-06 6 34838843 34838843 G A UHRF1BP1 Missense_Mutation p.V1311M 0.19 deleterious(0.03) benign(0.181) TCGA-WE-A8K1-06 6 43267668 43267668 G A SLC22A7 Missense_Mutation p.V231M 0.18 tolerated(0.16) possibly_damaging(0.627) TCGA-WE-A8K1-06 6 44116331 44116331 C T TMEM63B Silent p.S401S 0.24 TCGA-WE-A8K1-06 6 4995444 4995444 G A RPP40 Silent p.S320S 0.40 TCGA-WE-A8K1-06 6 73933492 73933492 C A KHDC1L Silent p.L122L 0.21 TCGA-WE-A8K1-06 6 85448224 85448224 G A TBX18 Missense_Mutation p.P364S 0.23 tolerated(0.61) benign(0.025) TCGA-WE-A8K1-06 6 89891709 89891709 A G GABRR1 Silent p.T288T 0.16 TCGA-WE-A8K1-06 7 100007135 100007135 G A ZCWPW1 Missense_Mutation p.P262S 0.22 tolerated(0.07) possibly_damaging(0.629) TCGA-WE-A8K1-06 7 100686654 100686654 C T MUC17 Missense_Mutation p.S3986L 0.21 benign(0.092) TCGA-WE-A8K1-06 7 100839334 100839334 C T MOGAT3 Missense_Mutation p.E307K 0.23 tolerated(0.15) benign(0.175) TCGA-WE-A8K1-06 7 103124159 103124159 G A RELN Silent p.I3374I 0.17 TCGA-WE-A8K1-06 7 103143559 103143559 G T RELN Missense_Mutation p.P2798Q 0.27 deleterious(0.03) benign(0.439) TCGA-WE-A8K1-06 7 107221270 107221270 T A BCAP29 Missense_Mutation p.L18H 0.18 deleterious(0) probably_damaging(0.983) TCGA-WE-A8K1-06 7 117232442 117232442 G A CFTR Missense_Mutation p.D741N 0.14 deleterious(0.01) benign(0.426) TCGA-WE-A8K1-06 7 119915014 119915014 G A KCND2 Missense_Mutation p.E110K 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-WE-A8K1-06 7 127236022 127236022 G A FSCN3 Missense_Mutation p.R269K 0.27 tolerated(1) benign(0.003) TCGA-WE-A8K1-06 7 135080613 135080613 G A CNOT4 Missense_Mutation p.S301L 0.15 deleterious(0) possibly_damaging(0.663) TCGA-WE-A8K1-06 7 141736720 141736720 C T MGAM Missense_Mutation p.T725I 0.14 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K1-06 7 142247314 142247314 G A TRBV7-3 Missense_Mutation p.H48Y 0.24 TCGA-WE-A8K1-06 7 142651033 142651033 G A KEL Missense_Mutation p.P312L 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 7 142983160 142983160 C T TMEM139 Missense_Mutation p.P37L 0.16 deleterious(0.01) possibly_damaging(0.747) TCGA-WE-A8K1-06 7 146741005 146741005 C T CNTNAP2 Missense_Mutation p.P137S 0.39 tolerated(0.76) benign(0.028) TCGA-WE-A8K1-06 7 18801829 18801829 C T HDAC9 Missense_Mutation p.S698F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K1-06 7 21913065 21913065 A G DNAH11 Silent p.E4054E 0.22 TCGA-WE-A8K1-06 7 27203162 27203162 C T HOXA9 3'UTR 0.22 TCGA-WE-A8K1-06 7 37934136 37934136 C T NME8 Missense_Mutation p.P490S 0.20 tolerated(0.14) possibly_damaging(0.507) TCGA-WE-A8K1-06 7 39379267 39379267 C T POU6F2 Nonsense_Mutation p.Q180* 0.18 TCGA-WE-A8K1-06 7 44575914 44575914 C T NPC1L1 Missense_Mutation p.E599K 0.19 deleterious(0.03) benign(0.03) TCGA-WE-A8K1-06 7 45140871 45140871 A G TBRG4 Missense_Mutation p.F594L 0.26 deleterious(0.04) possibly_damaging(0.656) TCGA-WE-A8K1-06 7 66582576 66582576 C T TYW1 Missense_Mutation p.L557F 0.14 deleterious(0) possibly_damaging(0.885) TCGA-WE-A8K1-06 7 72922732 72922732 G A BAZ1B Silent p.S98S 0.26 TCGA-WE-A8K1-06 7 75933006 75933006 C T HSPB1 Intron 0.33 TCGA-WE-A8K1-06 7 76132764 76132764 T G DTX2 Missense_Mutation p.S471A 0.22 tolerated(0.08) benign(0.015) TCGA-WE-A8K1-06 7 86394922 86394922 C T GRM3 Missense_Mutation p.S154F 0.18 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K1-06 7 88964801 88964801 C T ZNF804B Silent p.S835S 0.28 TCGA-WE-A8K1-06 8 103277475 103277475 C A UBR5 Missense_Mutation p.R2485L 0.16 tolerated(0.27) possibly_damaging(0.791) TCGA-WE-A8K1-06 8 103564132 103564132 C T ODF1 Silent p.S59S 0.23 TCGA-WE-A8K1-06 8 110442226 110442226 C T PKHD1L1 Silent p.S1063S 0.18 TCGA-WE-A8K1-06 8 119936821 119936821 C T TNFRSF11B Missense_Mutation p.R333Q 0.19 tolerated(0.06) probably_damaging(1) TCGA-WE-A8K1-06 8 120079625 120079625 C T COLEC10 Silent p.T35T 0.17 TCGA-WE-A8K1-06 8 124724977 124724977 G A ANXA13 Missense_Mutation p.P52L 0.19 tolerated(0.65) benign(0.001) TCGA-WE-A8K1-06 8 124724978 124724978 G A ANXA13 Missense_Mutation p.P52S 0.18 tolerated(0.38) benign(0.009) TCGA-WE-A8K1-06 8 12958156 12958156 G A DLC1 Missense_Mutation p.P564S 0.14 tolerated(0.24) benign(0.002) TCGA-WE-A8K1-06 8 12958157 12958157 G A DLC1 Silent p.V563V 0.13 TCGA-WE-A8K1-06 8 133187855 133187855 C T KCNQ3 Missense_Mutation p.E260K 0.33 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K1-06 8 144991752 144991752 G A PLEC Silent p.I4216I 0.17 TCGA-WE-A8K1-06 8 3087730 3087730 C T CSMD1 Missense_Mutation p.D1393N 0.36 probably_damaging(0.964) TCGA-WE-A8K1-06 8 36694389 36694389 T C KCNU1 Missense_Mutation p.F482L 0.19 tolerated(0.08) possibly_damaging(0.894) TCGA-WE-A8K1-06 8 55533537 55533537 C T RP1 Missense_Mutation p.T4I 0.14 deleterious(0) possibly_damaging(0.539) TCGA-WE-A8K1-06 8 62212537 62212537 C T CLVS1 Nonsense_Mutation p.Q51* 0.29 TCGA-WE-A8K1-06 8 70514018 70514018 C T SULF1 Missense_Mutation p.R339C 0.18 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 8 99441223 99441223 G A KCNS2 Missense_Mutation p.G339E 0.17 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 9 104130548 104130548 C T BAAT Missense_Mutation p.E175K 0.22 deleterious(0.01) possibly_damaging(0.872) TCGA-WE-A8K1-06 9 104390650 104390650 T C GRIN3A Missense_Mutation p.T796A 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8K1-06 9 107298998 107298998 C T OR13C3 Missense_Mutation p.E33K 0.19 tolerated(1) benign(0.001) TCGA-WE-A8K1-06 9 107380108 107380108 G A OR13C9 Silent p.I126I 0.15 TCGA-WE-A8K1-06 9 125377248 125377248 G A OR1Q1 Missense_Mutation p.V78I 0.21 tolerated(0.29) benign(0.029) TCGA-WE-A8K1-06 9 128201014 128201014 C T MAPKAP1 3'UTR 0.33 TCGA-WE-A8K1-06 9 130670630 130670630 G A ST6GALNAC4 3'UTR 0.15 TCGA-WE-A8K1-06 9 131262537 131262537 C T ODF2 3'UTR 0.40 TCGA-WE-A8K1-06 9 135073551 135073551 G A NTNG2 Missense_Mutation p.V138M 0.27 deleterious(0) possibly_damaging(0.903) TCGA-WE-A8K1-06 9 135374142 135374142 G A C9orf171 Missense_Mutation p.G122R 0.17 deleterious(0) probably_damaging(1) TCGA-WE-A8K1-06 9 139649874 139649874 G A LCN8 Silent p.L107L 0.33 TCGA-WE-A8K1-06 9 139925177 139925177 A G FUT7 Silent p.G338G 0.14 TCGA-WE-A8K1-06 9 140076141 140076141 G A ANAPC2 Missense_Mutation p.A487V 0.17 tolerated(0.08) possibly_damaging(0.859) TCGA-WE-A8K1-06 9 19032913 19032913 G A FAM154A 5'UTR 0.15 TCGA-WE-A8K1-06 9 21187205 21187205 G A IFNA4 Missense_Mutation p.S109F 0.17 tolerated(0.66) benign(0.006) TCGA-WE-A8K1-06 9 27949820 27949820 G A LINGO2 Missense_Mutation p.P284S 0.17 deleterious(0.01) benign(0.26) TCGA-WE-A8K1-06 9 32630389 32630389 C T TAF1L Missense_Mutation p.G1730E 0.17 deleterious_low_confidence(0.01) benign(0.045) TCGA-WE-A8K1-06 9 33265001 33265001 G A CHMP5 5'UTR 0.25 TCGA-WE-A8K1-06 9 34976538 34976538 C T KIAA1045 Missense_Mutation p.S217F 0.19 deleterious(0.02) probably_damaging(0.975) TCGA-WE-A8K1-06 9 75784965 75784965 A T ANXA1 Splice_Site p.X329_splice 0.17 TCGA-WE-A8K1-06 9 77282786 77282786 T A RORB Silent p.A360A 0.32 TCGA-WE-A8K1-06 9 8338945 8338945 C T PTPRD Missense_Mutation p.E1786K 0.18 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K1-06 9 87285583 87285583 G A NTRK2 5'UTR 0.15 TCGA-WE-A8K1-06 9 94519690 94519690 G A ROR2 Silent p.I109I 0.20 TCGA-WE-A8K1-06 X 100183206 100183206 G A XKRX Nonsense_Mutation p.R30* 0.38 TCGA-WE-A8K1-06 X 105190375 105190375 G A NRK Silent p.K1425K 0.50 TCGA-WE-A8K1-06 X 108652342 108652342 G A GUCY2F Missense_Mutation p.S616L 0.54 tolerated(0.31) benign(0.023) TCGA-WE-A8K1-06 X 115594000 115594000 G A CT83 Silent p.L6L 0.37 TCGA-WE-A8K1-06 X 129149647 129149647 G T BCORL1 Missense_Mutation p.G967C 0.45 possibly_damaging(0.706) TCGA-WE-A8K1-06 X 152482570 152482570 G A MAGEA1 Silent p.A147A 0.59 TCGA-WE-A8K1-06 X 155239485 155239485 G A IL9R Nonsense_Mutation p.W326* 0.09 TCGA-WE-A8K1-06 X 47272322 47272322 C T ZNF157 Missense_Mutation p.R284C 0.43 tolerated(0.22) benign(0.018) TCGA-WE-A8K1-06 X 54472809 54472809 G A FGD1 Silent p.F873F 0.33 TCGA-WE-A8K1-06 X 65413379 65413379 G A HEPH Missense_Mutation p.R477Q 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-WE-A8K1-06 X 86869518 86869518 G A KLHL4 Silent p.R224R 0.14 TCGA-WE-A8K1-06 X 88008787 88008787 C T CPXCR1 Silent p.F124F 0.26 TCGA-WE-A8K1-06 Y 16952464 16952464 G A NLGN4Y Silent p.L591L 0.48 TCGA-WE-A8K4-01 10 101439624 101439624 C T ENTPD7 Silent p.L180L 0.16 TCGA-WE-A8K4-01 10 101610383 101610383 C T ABCC2 Silent p.C1446C 0.26 TCGA-WE-A8K4-01 10 101610384 101610384 C T ABCC2 Silent p.L1447L 0.26 TCGA-WE-A8K4-01 10 106974243 106974243 G A SORCS3 Missense_Mutation p.E807K 0.22 tolerated(0.55) benign(0.015) TCGA-WE-A8K4-01 10 120802106 120802106 T C EIF3A Missense_Mutation p.R976G 0.21 tolerated(0.07) probably_damaging(0.972) TCGA-WE-A8K4-01 10 122665476 122665476 C T WDR11 Missense_Mutation p.A1127V 0.25 deleterious(0) benign(0.173) TCGA-WE-A8K4-01 10 124008270 124008270 C T TACC2 Silent p.L2835L 0.23 TCGA-WE-A8K4-01 10 124008271 124008271 T A TACC2 Missense_Mutation p.F2836I 0.22 probably_damaging(0.991) TCGA-WE-A8K4-01 10 124097653 124097653 A T BTBD16 3'UTR 0.23 TCGA-WE-A8K4-01 10 1405897 1405897 C T ADARB2 Missense_Mutation p.E135K 0.24 deleterious(0) possibly_damaging(0.805) TCGA-WE-A8K4-01 10 15255029 15255029 C T FAM171A1 Missense_Mutation p.R853K 0.29 tolerated(0.23) benign(0.004) TCGA-WE-A8K4-01 10 25886809 25886809 C T GPR158 Missense_Mutation p.R752C 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 10 26462642 26462642 G A MYO3A Missense_Mutation p.R1150K 0.16 tolerated(1) benign(0.001) TCGA-WE-A8K4-01 10 29581449 29581449 G A LYZL1 Nonsense_Mutation p.W93* 0.12 TCGA-WE-A8K4-01 10 38241871 38241871 G C ZNF25 Missense_Mutation p.H185Q 0.26 tolerated(1) benign(0.213) TCGA-WE-A8K4-01 10 48388802 48388802 C T RBP3 Silent p.E692E 0.30 TCGA-WE-A8K4-01 10 50122221 50122221 T C LRRC18 5'UTR 0.24 TCGA-WE-A8K4-01 10 50598179 50598179 C T DRGX Silent p.Q83Q 0.25 TCGA-WE-A8K4-01 10 55616951 55616951 T C PCDH15 Missense_Mutation p.I1264V 0.13 tolerated(0.59) benign(0.366) TCGA-WE-A8K4-01 10 5777270 5777270 C T FAM208B Missense_Mutation p.A403V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K4-01 10 61900217 61900217 G A ANK3 Intron 0.26 TCGA-WE-A8K4-01 10 61958152 61958152 C T ANK3 Silent p.E545E 0.18 TCGA-WE-A8K4-01 10 64136447 64136447 C T ZNF365 Silent p.F165F 0.27 TCGA-WE-A8K4-01 10 73473074 73473074 G A C10orf105 3'UTR 0.36 TCGA-WE-A8K4-01 10 73548720 73548720 C T CDH23 Silent p.F1953F 0.21 TCGA-WE-A8K4-01 10 7683964 7683964 G A ITIH5 Silent p.N75N 0.06 TCGA-WE-A8K4-01 10 8019238 8019238 C T TAF3 Missense_Mutation p.P756L 0.28 deleterious(0) possibly_damaging(0.713) TCGA-WE-A8K4-01 10 81037039 81037039 C T ZMIZ1 Missense_Mutation p.P128S 0.39 benign(0.009) TCGA-WE-A8K4-01 10 81060554 81060554 C T ZMIZ1 Missense_Mutation p.P625L 0.29 probably_damaging(0.999) TCGA-WE-A8K4-01 10 81060555 81060555 C T ZMIZ1 Silent p.P625P 0.24 TCGA-WE-A8K4-01 10 82126585 82126585 C T DYDC2 Missense_Mutation p.P152S 0.26 tolerated(0.53) benign(0.019) TCGA-WE-A8K4-01 10 84711264 84711264 C T NRG3 Missense_Mutation p.S365L 0.37 deleterious(0.02) possibly_damaging(0.74) TCGA-WE-A8K4-01 10 87373379 87373379 C T GRID1 Missense_Mutation p.D796N 0.36 deleterious(0.04) benign(0.289) TCGA-WE-A8K4-01 10 87898639 87898639 C T GRID1 Silent p.R221R 0.20 TCGA-WE-A8K4-01 10 90966295 90966295 G A CH25H Missense_Mutation p.P252L 0.20 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 10 93752 93752 C T TUBB8 Missense_Mutation p.E194K 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K4-01 10 95400746 95400746 G A PDE6C Missense_Mutation p.D603N 0.27 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 10 96109037 96109037 C T NOC3L Silent p.V409V 0.16 TCGA-WE-A8K4-01 10 96580253 96580253 G A CYP2C19 Missense_Mutation p.E274K 0.17 deleterious(0.02) benign(0.131) TCGA-WE-A8K4-01 10 98808744 98808744 C T SLIT1 Missense_Mutation p.G478E 0.41 tolerated(0.28) probably_damaging(1) TCGA-WE-A8K4-01 11 103175382 103175382 G A DYNC2H1 Missense_Mutation p.R3779H 0.33 benign(0.019) TCGA-WE-A8K4-01 11 10327277 10327277 C A ADM Nonsense_Mutation p.Y10* 0.23 TCGA-WE-A8K4-01 11 10823086 10823086 G A EIF4G2 Intron 0.24 TCGA-WE-A8K4-01 11 111845705 111845705 C T DIXDC1 Silent p.S218S 0.30 TCGA-WE-A8K4-01 11 114569198 114569198 C T NXPE2 Silent p.S188S 0.29 TCGA-WE-A8K4-01 11 118221333 118221333 G A CD3G Missense_Mutation p.S125N 0.50 deleterious(0) probably_damaging(0.962) TCGA-WE-A8K4-01 11 118516350 118516350 C T PHLDB1 Missense_Mutation p.S1133F 0.51 deleterious(0) probably_damaging(0.954) TCGA-WE-A8K4-01 11 120319833 120319833 G T ARHGEF12 Missense_Mutation p.D585Y 0.38 deleterious(0) possibly_damaging(0.873) TCGA-WE-A8K4-01 11 12183923 12183923 C T MICAL2 Missense_Mutation p.S74F 0.28 deleterious(0) possibly_damaging(0.574) TCGA-WE-A8K4-01 11 12237860 12237860 C T MICAL2 Silent p.I314I 0.24 TCGA-WE-A8K4-01 11 123516394 123516394 G A SCN3B Silent p.P40P 0.15 TCGA-WE-A8K4-01 11 123894616 123894616 G A OR10G9 Silent p.L299L 0.45 TCGA-WE-A8K4-01 11 123908824 123908824 C T OR10G7 Silent p.K295K 0.27 TCGA-WE-A8K4-01 11 133714436 133714436 G A SPATA19 Missense_Mutation p.H79Y 0.26 deleterious(0) possibly_damaging(0.607) TCGA-WE-A8K4-01 11 1774744 1774744 C T CTSD Missense_Mutation p.A410T 0.12 tolerated(0.34) benign(0.002) TCGA-WE-A8K4-01 11 20119267 20119267 A G NAV2 Missense_Mutation p.T2112A 0.22 tolerated(0.08) benign(0.097) TCGA-WE-A8K4-01 11 20119268 20119268 C T NAV2 Missense_Mutation p.T2112M 0.23 deleterious(0) possibly_damaging(0.762) TCGA-WE-A8K4-01 11 28080499 28080499 A G KIF18A Missense_Mutation p.L641P 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 11 34155890 34155890 C T NAT10 Missense_Mutation p.R587C 0.27 deleterious(0.03) benign(0.083) TCGA-WE-A8K4-01 11 35327790 35327790 C T SLC1A2 Splice_Site p.X188_splice 0.15 TCGA-WE-A8K4-01 11 36596056 36596056 C T RAG1 Missense_Mutation p.S401L 0.25 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-WE-A8K4-01 11 40136500 40136500 G T LRRC4C Missense_Mutation p.T448N 0.26 tolerated(0.5) benign(0.003) TCGA-WE-A8K4-01 11 43348066 43348066 C T API5 Missense_Mutation p.H254Y 0.26 deleterious(0.03) probably_damaging(0.916) TCGA-WE-A8K4-01 11 45274136 45274136 G A SYT13 Missense_Mutation p.P228S 0.33 tolerated(0.12) probably_damaging(0.988) TCGA-WE-A8K4-01 11 47647267 47647267 G A MTCH2 Silent p.P236P 0.29 TCGA-WE-A8K4-01 11 47647268 47647268 G A MTCH2 Missense_Mutation p.P236L 0.30 deleterious(0) probably_damaging(0.915) TCGA-WE-A8K4-01 11 47701596 47701596 C T AGBL2 Missense_Mutation p.E649K 0.23 tolerated(0.55) benign(0.094) TCGA-WE-A8K4-01 11 48267135 48267135 C T OR4X2 Silent p.F160F 0.21 TCGA-WE-A8K4-01 11 51411976 51411976 G A OR4A5 Silent p.F140F 0.22 TCGA-WE-A8K4-01 11 5344898 5344898 C T OR51B2 Silent p.L210L 0.22 TCGA-WE-A8K4-01 11 55038010 55038010 C T TRIM48 3'UTR 0.36 TCGA-WE-A8K4-01 11 55606419 55606419 C T OR5D16 Silent p.F64F 0.24 TCGA-WE-A8K4-01 11 56128424 56128424 G A OR8J1 Silent p.R234R 0.29 TCGA-WE-A8K4-01 11 5757736 5757736 C T OR56B1 5'UTR 0.17 TCGA-WE-A8K4-01 11 5969268 5969268 G A OR56A3 Missense_Mutation p.R231K 0.22 tolerated(0.51) benign(0.042) TCGA-WE-A8K4-01 11 61533528 61533528 C T MYRF Missense_Mutation p.P78L 0.50 deleterious(0.02) benign(0.031) TCGA-WE-A8K4-01 11 61560071 61560071 G A TMEM258 5'UTR 0.42 TCGA-WE-A8K4-01 11 63177293 63177293 C T SLC22A9 Missense_Mutation p.P541S 0.28 tolerated(0.25) benign(0.004) TCGA-WE-A8K4-01 11 64116895 64116895 G A CCDC88B Silent p.Q903Q 0.33 TCGA-WE-A8K4-01 11 64138787 64138787 C T RPS6KA4 Silent p.F718F 0.30 TCGA-WE-A8K4-01 11 64496484 64496484 T C RASGRP2 Missense_Mutation p.K541R 0.25 tolerated(0.71) benign(0.045) TCGA-WE-A8K4-01 11 64572545 64572560 GGCCCAGCCCACATGC - MEN1 Frame_Shift_Del p.H438Pfs*7 0.32 TCGA-WE-A8K4-01 11 6621485 6621485 T C RRP8 Missense_Mutation p.N421S 0.24 deleterious(0.02) possibly_damaging(0.465) TCGA-WE-A8K4-01 11 67264754 67264754 G A PITPNM1 Silent p.S698S 0.46 TCGA-WE-A8K4-01 11 71260131 71260131 C T KRTAP5-9 Missense_Mutation p.S143F 0.48 deleterious_low_confidence(0.02) unknown(0) TCGA-WE-A8K4-01 11 72560854 72560854 A T FCHSD2 Silent p.P463P 0.25 TCGA-WE-A8K4-01 11 75319167 75319167 T C MAP6 Missense_Mutation p.K369R 0.22 deleterious(0.05) benign(0.271) TCGA-WE-A8K4-01 11 7949289 7949289 C T OR10A6 Silent p.R307R 0.28 TCGA-WE-A8K4-01 11 7949436 7949436 A G OR10A6 Silent p.T258T 0.28 TCGA-WE-A8K4-01 11 799527 799527 G A PIDD Missense_Mutation p.S838F 0.18 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K4-01 11 8751691 8751691 G A ST5 Silent p.P382P 0.24 TCGA-WE-A8K4-01 11 8751692 8751692 G A ST5 Missense_Mutation p.P382L 0.25 deleterious(0.02) benign(0.023) TCGA-WE-A8K4-01 11 92533866 92533866 C T FAT3 Missense_Mutation p.P2563S 0.41 possibly_damaging(0.672) TCGA-WE-A8K4-01 11 93839267 93839267 C T HEPHL1 Missense_Mutation p.H1006Y 0.27 deleterious(0.03) probably_damaging(1) TCGA-WE-A8K4-01 11 99941191 99941191 C T CNTN5 Nonsense_Mutation p.Q400* 0.27 TCGA-WE-A8K4-01 12 100567151 100567151 G A RP11-175P13.3 RNA 0.25 TCGA-WE-A8K4-01 12 101576607 101576607 G A SLC5A8 Missense_Mutation p.S380F 0.28 deleterious(0.04) benign(0.319) TCGA-WE-A8K4-01 12 101598313 101598313 G A SLC5A8 Missense_Mutation p.R128C 0.34 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 12 104042560 104042560 G A STAB2 Missense_Mutation p.G378E 0.24 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 12 10999892 10999892 G A PRR4 Missense_Mutation p.P59S 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.803) TCGA-WE-A8K4-01 12 10999893 10999893 G A PRR4 Silent p.P58P 0.16 TCGA-WE-A8K4-01 12 11150446 11150446 G A TAS2R20 Missense_Mutation p.S10F 0.30 tolerated(0.06) benign(0.208) TCGA-WE-A8K4-01 12 112087815 112087815 G A BRAP Missense_Mutation p.T448I 0.23 tolerated(0.22) benign(0.189) TCGA-WE-A8K4-01 12 116435009 116435009 G A MED13L Missense_Mutation p.P866S 0.21 deleterious(0) unknown(0) TCGA-WE-A8K4-01 12 120222818 120222818 C T CIT Silent p.K449K 0.24 TCGA-WE-A8K4-01 12 121881968 121881968 C T KDM2B Silent p.R766R 0.17 TCGA-WE-A8K4-01 12 123286347 123286347 G A CCDC62 Missense_Mutation p.G552R 0.22 tolerated(0.17) possibly_damaging(0.739) TCGA-WE-A8K4-01 12 123687389 123687389 C T MPHOSPH9 Nonsense_Mutation p.W369* 0.16 TCGA-WE-A8K4-01 12 131593310 131593310 C T GPR133 Silent p.F643F 0.20 TCGA-WE-A8K4-01 12 132466971 132466971 C T EP400 Missense_Mutation p.P626L 0.17 unknown(0) TCGA-WE-A8K4-01 12 14805945 14805945 C T GUCY2C Missense_Mutation p.D492N 0.24 tolerated(0.06) possibly_damaging(0.796) TCGA-WE-A8K4-01 12 301671 301671 G A SLC6A12 Silent p.L558L 0.17 TCGA-WE-A8K4-01 12 432368 432368 G A KDM5A Missense_Mutation p.R719C 0.33 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 12 45568002 45568002 G A PLEKHA8P1 RNA 0.24 TCGA-WE-A8K4-01 12 45568003 45568003 G A PLEKHA8P1 RNA 0.23 TCGA-WE-A8K4-01 12 47628880 47628880 C T PCED1B Silent p.L12L 0.13 TCGA-WE-A8K4-01 12 48866661 48866661 A G ANP32D Missense_Mutation p.S72G 0.16 deleterious(0.02) benign(0.189) TCGA-WE-A8K4-01 12 4919929 4919929 G A KCNA6 Missense_Mutation p.G241E 0.13 tolerated(0.83) benign(0.286) TCGA-WE-A8K4-01 12 4920735 4920735 C A KCNA6 Missense_Mutation p.P510T 0.18 tolerated_low_confidence(0.24) benign(0.014) TCGA-WE-A8K4-01 12 49938134 49938134 C T KCNH3 Silent p.I386I 0.31 TCGA-WE-A8K4-01 12 49949732 49949732 C T KCNH3 Silent p.P822P 0.20 TCGA-WE-A8K4-01 12 52886862 52886862 G A KRT6A Silent p.S37S 0.24 TCGA-WE-A8K4-01 12 52981510 52981510 C T KRT72 Silent p.R405R 0.15 TCGA-WE-A8K4-01 12 55356418 55356418 C T TESPA1 Missense_Mutation p.E422K 0.26 tolerated_low_confidence(0.19) benign(0.009) TCGA-WE-A8K4-01 12 56396339 56396339 C T SUOX Silent p.I21I 0.27 TCGA-WE-A8K4-01 12 57864204 57864204 C T GLI1 Silent p.L561L 0.16 TCGA-WE-A8K4-01 12 62148784 62148784 G A FAM19A2 Missense_Mutation p.T43I 0.17 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K4-01 12 62918890 62918890 A C MON2 Missense_Mutation p.K379T 0.15 deleterious(0) probably_damaging(0.958) TCGA-WE-A8K4-01 12 64679832 64679832 G A C12orf56 Silent p.D214D 0.23 TCGA-WE-A8K4-01 12 660113 660113 C T B4GALNT3 Silent p.L341L 0.21 TCGA-WE-A8K4-01 12 70963460 70963460 C T PTPRB Missense_Mutation p.R1210Q 0.21 tolerated(0.09) benign(0.178) TCGA-WE-A8K4-01 12 71978156 71978156 C T LGR5 Missense_Mutation p.S789F 0.26 deleterious(0) probably_damaging(0.987) TCGA-WE-A8K4-01 12 7290645 7290645 C T CLSTN3 Silent p.F435F 0.19 TCGA-WE-A8K4-01 12 7984262 7984262 T G SLC2A14 Silent p.I93I 0.16 TCGA-WE-A8K4-01 12 81734920 81734920 G A PPFIA2 Missense_Mutation p.P777L 0.19 tolerated(0.25) benign(0.002) TCGA-WE-A8K4-01 12 81734921 81734921 G A PPFIA2 Missense_Mutation p.P777S 0.18 tolerated(1) benign(0) TCGA-WE-A8K4-01 12 86373481 86373481 G A MGAT4C Silent p.P341P 0.29 TCGA-WE-A8K4-01 12 9304838 9304838 G A PZP Missense_Mutation p.P1397L 0.14 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K4-01 12 96379724 96379724 G A HAL Missense_Mutation p.R390C 0.23 deleterious(0.01) benign(0.12) TCGA-WE-A8K4-01 12 97078968 97078968 G T C12orf55 Missense_Mutation p.G1989V 0.21 deleterious(0.01) benign(0) TCGA-WE-A8K4-01 13 101077916 101077916 G A PCCA Silent p.V592V 0.36 TCGA-WE-A8K4-01 13 101179994 101179994 G A PCCA Silent p.G702G 0.27 TCGA-WE-A8K4-01 13 101712248 101712248 C T NALCN Silent p.L1609L 0.44 TCGA-WE-A8K4-01 13 103703613 103703613 C T SLC10A2 Nonsense_Mutation p.W252* 0.20 TCGA-WE-A8K4-01 13 20797319 20797319 C T GJB6 Missense_Mutation p.E101K 0.43 tolerated(0.33) benign(0.009) TCGA-WE-A8K4-01 13 33591343 33591343 C T KL Silent p.P255P 0.40 TCGA-WE-A8K4-01 13 38154775 38154775 C T POSTN Silent p.A484A 0.29 TCGA-WE-A8K4-01 13 70681624 70681624 T C KLHL1 Missense_Mutation p.K70E 0.59 tolerated_low_confidence(0.1) benign(0.175) TCGA-WE-A8K4-01 13 96489453 96489453 G T UGGT2 Missense_Mutation p.L1430I 0.21 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 13 97639571 97639571 C T OXGR1 Missense_Mutation p.R148Q 0.28 tolerated(0.13) benign(0.079) TCGA-WE-A8K4-01 14 102449411 102449411 C T DYNC1H1 Silent p.F339F 0.27 TCGA-WE-A8K4-01 14 102906825 102906825 G A TECPR2 Silent p.G877G 0.18 TCGA-WE-A8K4-01 14 106236283 106236283 G A IGHG3 Silent p.P174P 0.24 TCGA-WE-A8K4-01 14 106471277 106471277 G A IGHV1-3 Missense_Mutation p.S107F 0.22 deleterious(0.04) benign(0.03) TCGA-WE-A8K4-01 14 106733278 106733278 C T IGHV1-24 Missense_Mutation p.E73K 0.28 tolerated(0.47) benign(0.005) TCGA-WE-A8K4-01 14 20248924 20248924 C T OR4M1 Missense_Mutation p.S148F 0.12 tolerated(0.1) benign(0.353) TCGA-WE-A8K4-01 14 20249285 20249285 C T OR4M1 Silent p.S268S 0.07 TCGA-WE-A8K4-01 14 20389662 20389662 G A OR4K5 Silent p.R299R 0.08 TCGA-WE-A8K4-01 14 20483158 20483158 C T OR4K14 Silent p.G65G 0.21 TCGA-WE-A8K4-01 14 20502315 20502315 A G OR4K13 Silent p.A201A 0.24 TCGA-WE-A8K4-01 14 21623850 21623850 G A OR5AU1 Missense_Mutation p.S112F 0.30 tolerated(1) benign(0.001) TCGA-WE-A8K4-01 14 22314875 22314875 C T TRAV8-2 5'UTR 0.19 TCGA-WE-A8K4-01 14 22392622 22392622 G A TRAV14DV4 Missense_Mutation p.D49N 0.29 TCGA-WE-A8K4-01 14 23058126 23058126 G A DAD1 5'UTR 0.20 TCGA-WE-A8K4-01 14 24841655 24841655 C T NFATC4 Missense_Mutation p.A465V 0.20 deleterious(0.02) possibly_damaging(0.888) TCGA-WE-A8K4-01 14 31355427 31355427 G A COCH Silent p.R462R 0.17 TCGA-WE-A8K4-01 14 31602804 31602804 C T HECTD1 Missense_Mutation p.G1219E 0.25 deleterious(0) probably_damaging(0.936) TCGA-WE-A8K4-01 14 31602805 31602805 C A HECTD1 Missense_Mutation p.G1219W 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 14 47342647 47342647 C G MDGA2 Missense_Mutation p.G914A 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K4-01 14 57947334 57947334 C T C14orf105 Missense_Mutation p.E212K 0.24 tolerated(0.06) benign(0.258) TCGA-WE-A8K4-01 14 61519137 61519137 T G SLC38A6 Intron 0.17 TCGA-WE-A8K4-01 14 63174542 63174542 G A KCNH5 Missense_Mutation p.P884L 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.632) TCGA-WE-A8K4-01 14 64488725 64488725 C T SYNE2 Missense_Mutation p.H1835Y 0.22 probably_damaging(0.999) TCGA-WE-A8K4-01 14 65260035 65260035 C T SPTB Silent p.G782G 0.22 TCGA-WE-A8K4-01 14 66188516 66188516 C T FUT8 Nonsense_Mutation p.Q287* 0.29 TCGA-WE-A8K4-01 14 67647668 67647668 G A GPHN 3'UTR 0.15 TCGA-WE-A8K4-01 14 69805411 69805411 C T GALNT16 Silent p.I337I 0.32 TCGA-WE-A8K4-01 14 71570252 71570252 A G PCNX Silent p.Q1987Q 0.22 TCGA-WE-A8K4-01 14 73421093 73421093 G A DCAF4 Splice_Site p.X303_splice 0.11 TCGA-WE-A8K4-01 14 74754556 74754556 C T ABCD4 Silent p.R531R 0.24 TCGA-WE-A8K4-01 14 80328034 80328034 G A NRXN3 Silent p.R971R 0.16 TCGA-WE-A8K4-01 14 88478013 88478013 C T GPR65 Silent p.I274I 0.20 TCGA-WE-A8K4-01 14 88478280 88478280 G A GPR65 3'UTR 0.50 TCGA-WE-A8K4-01 14 91749779 91749779 C T CCDC88C Missense_Mutation p.M1508I 0.62 tolerated(0.46) benign(0.001) TCGA-WE-A8K4-01 14 94009031 94009031 G A UNC79 Missense_Mutation p.E405K 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-WE-A8K4-01 14 95560425 95560425 C T DICER1 Missense_Mutation p.E1722K 0.17 deleterious(0.04) benign(0.036) TCGA-WE-A8K4-01 14 96134824 96134824 C T TCL6 Intron 0.18 TCGA-WE-A8K4-01 14 96768354 96768354 T A ATG2B Missense_Mutation p.N1710I 0.24 deleterious(0) probably_damaging(0.991) TCGA-WE-A8K4-01 15 25327995 25327995 G A SNORD116-16 RNA 0.24 TCGA-WE-A8K4-01 15 25423951 25423951 G A SNORD115-5 RNA 0.20 TCGA-WE-A8K4-01 15 25463685 25463685 C T SNORD115-27 5'Flank 0.24 TCGA-WE-A8K4-01 15 29346152 29346152 C T APBA2 Missense_Mutation p.P22L 0.23 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-WE-A8K4-01 15 31294202 31294202 G A TRPM1 Silent p.F1584F 0.26 TCGA-WE-A8K4-01 15 32915751 32915751 C T ARHGAP11A Missense_Mutation p.R87W 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 15 38641708 38641708 T C SPRED1 Missense_Mutation p.L223P 0.16 tolerated(0.1) benign(0.054) TCGA-WE-A8K4-01 15 40657880 40657880 G A DISP2 Nonsense_Mutation p.W300* 0.23 TCGA-WE-A8K4-01 15 40913435 40913435 C T CASC5 Missense_Mutation p.H351Y 0.10 tolerated(0.11) benign(0.213) TCGA-WE-A8K4-01 15 41853474 41853474 C T TYRO3 Missense_Mutation p.P92S 0.24 tolerated(0.13) benign(0.006) TCGA-WE-A8K4-01 15 41853475 41853475 C T TYRO3 Missense_Mutation p.P92L 0.23 deleterious(0.04) benign(0.152) TCGA-WE-A8K4-01 15 42160300 42160300 G C SPTBN5 Missense_Mutation p.C2058W 0.30 probably_damaging(0.957) TCGA-WE-A8K4-01 15 42172458 42172458 G A SPTBN5 Missense_Mutation p.S904F 0.29 benign(0.178) TCGA-WE-A8K4-01 15 43038186 43038186 G A TTBK2 Missense_Mutation p.S1181L 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-WE-A8K4-01 15 43351902 43351902 G A UBR1 Missense_Mutation p.S328L 0.13 deleterious(0) possibly_damaging(0.908) TCGA-WE-A8K4-01 15 48591467 48591467 G A SLC12A1 Missense_Mutation p.E1031K 0.23 tolerated(0.83) possibly_damaging(0.776) TCGA-WE-A8K4-01 15 53994374 53994374 G A WDR72 Missense_Mutation p.A509V 0.20 deleterious(0.01) probably_damaging(0.927) TCGA-WE-A8K4-01 15 54308005 54308005 C T UNC13C Missense_Mutation p.R969C 0.28 deleterious_low_confidence(0) benign(0.006) TCGA-WE-A8K4-01 15 58430692 58430692 C T AQP9 5'UTR 0.33 TCGA-WE-A8K4-01 15 63032949 63032949 C T TLN2 Missense_Mutation p.L1336F 0.38 tolerated(0.05) possibly_damaging(0.702) TCGA-WE-A8K4-01 15 63594638 63594638 C T APH1B Silent p.I191I 0.24 TCGA-WE-A8K4-01 15 64967104 64967104 C A ZNF609 Missense_Mutation p.S684Y 0.21 deleterious(0.03) possibly_damaging(0.589) TCGA-WE-A8K4-01 15 65214125 65214125 G A ANKDD1A Silent p.G91G 0.29 TCGA-WE-A8K4-01 15 66793783 66793783 G A RPL4 Silent p.I202I 0.21 TCGA-WE-A8K4-01 15 74043453 74043453 G A C15orf59 Missense_Mutation p.P7S 0.25 deleterious_low_confidence(0.03) benign(0.295) TCGA-WE-A8K4-01 15 74043454 74043454 G A C15orf59 Silent p.A6A 0.24 TCGA-WE-A8K4-01 15 74565130 74565130 G A CCDC33 Silent p.R219R 0.26 TCGA-WE-A8K4-01 15 74625127 74625127 G A CCDC33 Missense_Mutation p.E627K 0.18 deleterious(0) benign(0.086) TCGA-WE-A8K4-01 15 74637400 74637400 G A CYP11A1 Missense_Mutation p.R204C 0.19 deleterious(0) possibly_damaging(0.476) TCGA-WE-A8K4-01 15 78219147 78219147 G A RP11-114H24.7 3'Flank 0.30 TCGA-WE-A8K4-01 15 79092819 79092819 G A ADAMTS7 Silent p.F57F 0.19 TCGA-WE-A8K4-01 15 81235320 81235320 G A KIAA1199 Missense_Mutation p.G1245D 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 15 85327024 85327024 C T ZNF592 Missense_Mutation p.P373L 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 15 85399752 85399752 G A ALPK3 Missense_Mutation p.D797N 0.26 deleterious_low_confidence(0) benign(0.218) TCGA-WE-A8K4-01 15 89399088 89399088 C T ACAN Missense_Mutation p.P1091L 0.50 tolerated(0.06) unknown(0) TCGA-WE-A8K4-01 15 90802111 90802111 G A TTLL13 Missense_Mutation p.R435Q 0.29 tolerated(0.13) benign(0.065) TCGA-WE-A8K4-01 16 10525256 10525256 C T ATF7IP2 Missense_Mutation p.S260L 0.24 tolerated(0.15) benign(0.084) TCGA-WE-A8K4-01 16 1398110 1398110 G A BAIAP3 Missense_Mutation p.E1090K 0.11 deleterious(0.03) probably_damaging(0.989) TCGA-WE-A8K4-01 16 1479322 1479322 C T C16orf91 Silent p.G8G 0.22 TCGA-WE-A8K4-01 16 14972622 14972622 C T NOMO1 Silent p.S896S 0.20 TCGA-WE-A8K4-01 16 17211687 17211687 G A XYLT1 Silent p.I791I 0.22 TCGA-WE-A8K4-01 16 1894931 1894931 A C MEIOB Missense_Mutation p.I271R 0.14 deleterious(0.04) benign(0.013) TCGA-WE-A8K4-01 16 20492022 20492022 G A ACSM2A Missense_Mutation p.G470E 0.19 deleterious(0) probably_damaging(0.988) TCGA-WE-A8K4-01 16 20554457 20554457 C T ACSM2B Missense_Mutation p.G470E 0.11 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 16 21069497 21069497 G A DNAH3 Silent p.V1278V 0.24 TCGA-WE-A8K4-01 16 21213314 21213314 C T ZP2 Missense_Mutation p.E440K 0.22 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 16 21636289 21636289 C T METTL9 Nonsense_Mutation p.Q202* 0.19 TCGA-WE-A8K4-01 16 23690544 23690544 G A PLK1 Silent p.K97K 0.24 TCGA-WE-A8K4-01 16 24268049 24268049 C T CACNG3 5'UTR 0.29 TCGA-WE-A8K4-01 16 24815594 24815594 A T TNRC6A Missense_Mutation p.Q1264L 0.18 tolerated(0.15) possibly_damaging(0.859) TCGA-WE-A8K4-01 16 24831632 24831632 C T TNRC6A Silent p.P1751P 0.15 TCGA-WE-A8K4-01 16 25228321 25228321 C T AQP8 5'UTR 0.16 TCGA-WE-A8K4-01 16 27457338 27457338 A T IL21R Nonsense_Mutation p.K266* 0.10 TCGA-WE-A8K4-01 16 2813867 2813867 C T SRRM2 Missense_Mutation p.P1113L 0.19 unknown(0) TCGA-WE-A8K4-01 16 2988234 2988234 C T FLYWCH1 Silent p.F608F 0.46 TCGA-WE-A8K4-01 16 3016683 3016683 C T KREMEN2 Missense_Mutation p.S176F 0.30 deleterious(0) possibly_damaging(0.866) TCGA-WE-A8K4-01 16 31090856 31090856 C T ZNF646 Missense_Mutation p.R1071C 0.16 deleterious(0) possibly_damaging(0.796) TCGA-WE-A8K4-01 16 31144689 31144689 G C PRSS8 Missense_Mutation p.Q42E 0.15 deleterious(0.04) benign(0.161) TCGA-WE-A8K4-01 16 31235621 31235621 C T TRIM72 Nonsense_Mutation p.Q327* 0.31 TCGA-WE-A8K4-01 16 31422130 31422130 C T ITGAD Silent p.T429T 0.10 TCGA-WE-A8K4-01 16 3819319 3819319 G A CREBBP Silent p.V972V 0.25 TCGA-WE-A8K4-01 16 4312328 4312328 G A TFAP4 Silent p.I117I 0.26 TCGA-WE-A8K4-01 16 48175186 48175186 G A ABCC12 Silent p.F118F 0.34 TCGA-WE-A8K4-01 16 66621932 66621932 G A CMTM2 Silent p.K219K 0.24 TCGA-WE-A8K4-01 16 66919516 66919516 G A PDP2 Silent p.Q443Q 0.25 TCGA-WE-A8K4-01 16 68597746 68597746 C T ZFP90 Silent p.S352S 0.13 TCGA-WE-A8K4-01 16 71103325 71103325 C T HYDIN Missense_Mutation p.G607S 0.20 probably_damaging(0.994) TCGA-WE-A8K4-01 16 72110437 72110437 G A HPR Silent p.G168G 0.25 TCGA-WE-A8K4-01 16 77326983 77326983 G A ADAMTS18 Missense_Mutation p.S1060L 0.26 deleterious(0.03) benign(0.311) TCGA-WE-A8K4-01 16 7743326 7743326 C T RBFOX1 Intron 0.19 TCGA-WE-A8K4-01 16 77910340 77910340 C T VAT1L Missense_Mutation p.L266F 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 16 81078157 81078157 C T ATMIN Missense_Mutation p.S685F 0.25 tolerated(0.5) benign(0.031) TCGA-WE-A8K4-01 16 830670 830670 G A MSLNL Missense_Mutation p.R111C 0.21 benign(0.14) TCGA-WE-A8K4-01 16 84796616 84796616 G A USP10 Missense_Mutation p.E526K 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 16 85141452 85141452 G A FAM92B Silent p.I142I 0.33 TCGA-WE-A8K4-01 16 85143969 85143969 C T FAM92B Missense_Mutation p.A40T 0.30 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 16 85695091 85695091 G A GSE1 Silent p.G660G 0.28 TCGA-WE-A8K4-01 16 87938439 87938439 C T CA5A Missense_Mutation p.E138K 0.13 tolerated(0.2) benign(0.302) TCGA-WE-A8K4-01 16 89294238 89294238 C T ZNF778 Silent p.F486F 0.19 TCGA-WE-A8K4-01 16 9862897 9862897 G A GRIN2A Silent p.N802N 0.18 TCGA-WE-A8K4-01 17 10350330 10350330 C T MYH4 Silent p.Q1723Q 0.26 TCGA-WE-A8K4-01 17 10350525 10350525 C T MYH4 Silent p.Q1658Q 0.36 TCGA-WE-A8K4-01 17 10401235 10401235 C T MYH1 Splice_Site p.X1394_splice 0.19 TCGA-WE-A8K4-01 17 10408800 10408800 G A MYH1 Missense_Mutation p.P735S 0.18 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K4-01 17 10408801 10408801 G A MYH1 Silent p.I734I 0.18 TCGA-WE-A8K4-01 17 11568150 11568150 G A DNAH9 Missense_Mutation p.E866K 0.21 benign(0.033) TCGA-WE-A8K4-01 17 12832339 12832339 T G ARHGAP44 Silent p.A186A 0.18 TCGA-WE-A8K4-01 17 14248954 14248954 C T HS3ST3B1 Silent p.G388G 0.18 TCGA-WE-A8K4-01 17 15508590 15508590 G T RP11-385D13.1 Missense_Mutation p.F770L 0.30 tolerated_low_confidence(0.26) probably_damaging(0.953) TCGA-WE-A8K4-01 17 16455784 16455784 G A ZNF287 Missense_Mutation p.H558Y 0.21 deleterious(0) probably_damaging(0.983) TCGA-WE-A8K4-01 17 17179400 17179400 A G COPS3 Missense_Mutation p.V45A 0.23 tolerated(0.13) benign(0.037) TCGA-WE-A8K4-01 17 1840992 1840992 C T RTN4RL1 Missense_Mutation p.A42T 0.15 deleterious(0.02) probably_damaging(0.912) TCGA-WE-A8K4-01 17 19700717 19700717 G A ULK2 Missense_Mutation p.P601S 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8K4-01 17 2290914 2290914 C T MNT Missense_Mutation p.E344K 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-WE-A8K4-01 17 25974348 25974348 C T LGALS9 Missense_Mutation p.R271C 0.23 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K4-01 17 27186110 27186110 G A ERAL1 Silent p.E363E 0.27 TCGA-WE-A8K4-01 17 27309039 27309039 G A SEZ6 Missense_Mutation p.P25L 0.21 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-WE-A8K4-01 17 29684077 29684077 C T NF1 Missense_Mutation p.P2613L 0.20 tolerated(0.65) probably_damaging(0.992) TCGA-WE-A8K4-01 17 3195057 3195057 C T OR3A1 Missense_Mutation p.D274N 0.23 deleterious(0.01) probably_damaging(0.938) TCGA-WE-A8K4-01 17 32483192 32483192 G A ASIC2 Silent p.N120N 0.28 TCGA-WE-A8K4-01 17 32483227 32483227 G A ASIC2 Missense_Mutation p.H109Y 0.22 tolerated(0.85) benign(0.024) TCGA-WE-A8K4-01 17 3301433 3301433 G A OR1E1 Missense_Mutation p.S91F 0.19 deleterious(0.02) benign(0.043) TCGA-WE-A8K4-01 17 33289102 33289102 G A ZNF830 Missense_Mutation p.G173R 0.14 tolerated(0.27) benign(0.002) TCGA-WE-A8K4-01 17 33348735 33348735 G A RFFL Silent p.P82P 0.17 TCGA-WE-A8K4-01 17 33968916 33968916 T G AP2B1 Silent p.T486T 0.36 TCGA-WE-A8K4-01 17 34073267 34073267 G A GAS2L2 Missense_Mutation p.P417S 0.25 tolerated(0.14) benign(0.095) TCGA-WE-A8K4-01 17 3486720 3486720 G A SHPK Missense_Mutation p.P463L 0.20 deleterious(0) benign(0.076) TCGA-WE-A8K4-01 17 35928980 35928980 G A SYNRG Missense_Mutation p.S465F 0.25 deleterious(0) probably_damaging(0.953) TCGA-WE-A8K4-01 17 3593904 3593904 C T P2RX5 Missense_Mutation p.G144E 0.16 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 17 36872783 36872783 C T MLLT6 Silent p.F400F 0.14 TCGA-WE-A8K4-01 17 37786257 37786257 G A PPP1R1B Silent p.S66S 0.24 TCGA-WE-A8K4-01 17 38126760 38126760 C T GSDMA Silent p.L140L 0.17 TCGA-WE-A8K4-01 17 39580310 39580310 G A KRT37 Missense_Mutation p.R156C 0.27 tolerated(0.13) benign(0.04) TCGA-WE-A8K4-01 17 39643420 39643420 C - KRT36 Frame_Shift_Del p.N331Ifs*24 0.17 TCGA-WE-A8K4-01 17 40091911 40091912 - TTCTAT TTC25 RNA 0.22 TCGA-WE-A8K4-01 17 40312415 40312415 C T KCNH4 Silent p.R899R 0.18 TCGA-WE-A8K4-01 17 40839817 40839817 C T CNTNAP1 Missense_Mutation p.P375L 0.35 deleterious(0.02) probably_damaging(0.965) TCGA-WE-A8K4-01 17 45481380 45481380 T C EFCAB13 Silent p.F718F 0.17 TCGA-WE-A8K4-01 17 48275529 48275529 C T COL1A1 Missense_Mutation p.G194D 0.33 unknown(0) TCGA-WE-A8K4-01 17 48918401 48918401 C T WFIKKN2 3'UTR 0.37 TCGA-WE-A8K4-01 17 4936581 4936581 C T SLC52A1 Missense_Mutation p.G370D 0.25 tolerated(0.11) possibly_damaging(0.753) TCGA-WE-A8K4-01 17 51901051 51901051 G A KIF2B Silent p.R219R 0.17 TCGA-WE-A8K4-01 17 53852192 53852192 C T PCTP Missense_Mutation p.P184L 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-WE-A8K4-01 17 55183968 55183968 C T AKAP1 Silent p.L381L 0.21 TCGA-WE-A8K4-01 17 57057653 57057653 G A PPM1E Missense_Mutation p.G510E 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.48) TCGA-WE-A8K4-01 17 57738896 57738896 C T CLTC Silent p.I420I 0.25 TCGA-WE-A8K4-01 17 60814507 60814507 C T MARCH10 Missense_Mutation p.G241E 0.22 deleterious(0.02) benign(0.172) TCGA-WE-A8K4-01 17 61611498 61611498 C T KCNH6 Silent p.I309I 0.26 TCGA-WE-A8K4-01 17 62750763 62750763 G A hsa-mir-6080 RNA 0.27 TCGA-WE-A8K4-01 17 644761 644761 G A FAM57A Missense_Mutation p.R242K 0.34 tolerated(0.36) benign(0.009) TCGA-WE-A8K4-01 17 65026923 65026923 C T CACNG4 Silent p.L263L 0.34 TCGA-WE-A8K4-01 17 6604387 6604387 G A SLC13A5 Missense_Mutation p.P259S 0.33 deleterious(0) probably_damaging(0.986) TCGA-WE-A8K4-01 17 66981073 66981073 C T ABCA9 Silent p.L1444L 0.25 TCGA-WE-A8K4-01 17 685548 685548 G A GLOD4 5'UTR 0.19 TCGA-WE-A8K4-01 17 685549 685549 G A GLOD4 5'UTR 0.19 TCGA-WE-A8K4-01 17 706987 706987 T A NXN Nonsense_Mutation p.K354* 0.29 TCGA-WE-A8K4-01 17 72436195 72436195 C T GPRC5C Missense_Mutation p.L139F 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-WE-A8K4-01 17 72522020 72522020 C T CD300LB Silent p.K116K 0.18 TCGA-WE-A8K4-01 17 72771831 72771831 A G NAT9 Silent p.L3L 0.26 TCGA-WE-A8K4-01 17 73501718 73501718 G A CASKIN2 Silent p.L284L 0.24 TCGA-WE-A8K4-01 17 73554254 73554254 G A LLGL2 Silent p.V64V 0.21 TCGA-WE-A8K4-01 17 73554255 73554255 G A LLGL2 Missense_Mutation p.E65K 0.22 deleterious(0) benign(0.362) TCGA-WE-A8K4-01 17 7369454 7369454 G A ZBTB4 Missense_Mutation p.P223S 0.19 benign(0.001) TCGA-WE-A8K4-01 17 73726982 73726982 C T ITGB4 Silent p.S343S 0.28 TCGA-WE-A8K4-01 17 73999327 73999327 C T CDK3 Missense_Mutation p.R214C 0.21 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 17 74006160 74006160 G A EVPL Silent p.L1042L 0.31 TCGA-WE-A8K4-01 17 74154497 74154497 G A RNF157 Missense_Mutation p.P464S 0.21 tolerated_low_confidence(0.35) benign(0.002) TCGA-WE-A8K4-01 17 7557429 7557429 G A ATP1B2 Missense_Mutation p.E136K 0.21 tolerated(0.69) benign(0.047) TCGA-WE-A8K4-01 17 76499012 76499012 C T DNAH17 Missense_Mutation p.E1676K 0.17 possibly_damaging(0.554) TCGA-WE-A8K4-01 17 7691186 7691186 C T DNAH2 Silent p.L2204L 0.33 TCGA-WE-A8K4-01 17 78162304 78162304 G A CARD14 Silent p.K268K 0.12 TCGA-WE-A8K4-01 17 78162305 78162305 G A CARD14 Missense_Mutation p.E269K 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-WE-A8K4-01 17 78286866 78286866 C T RNF213 Nonsense_Mutation p.Q904* 0.18 TCGA-WE-A8K4-01 17 78938108 78938108 C T RPTOR Missense_Mutation p.S1329L 0.40 deleterious(0) probably_damaging(0.933) TCGA-WE-A8K4-01 17 7951118 7951118 C T ALOX15B Missense_Mutation p.P579L 0.21 tolerated(0.06) probably_damaging(1) TCGA-WE-A8K4-01 17 8017921 8017921 C T ALOXE3 Silent p.G319G 0.20 TCGA-WE-A8K4-01 17 8017922 8017922 C T ALOXE3 Missense_Mutation p.G319E 0.20 tolerated(0.12) probably_damaging(0.93) TCGA-WE-A8K4-01 17 8644983 8644983 C T CCDC42 Missense_Mutation p.D101N 0.21 deleterious(0) possibly_damaging(0.598) TCGA-WE-A8K4-01 17 8808154 8808154 G A PIK3R5 Missense_Mutation p.P118S 0.15 deleterious(0) probably_damaging(0.99) TCGA-WE-A8K4-01 18 19996873 19996873 C T CTAGE1 Missense_Mutation p.G301E 0.37 tolerated(0.61) possibly_damaging(0.465) TCGA-WE-A8K4-01 18 28587028 28587028 A T DSC3 Missense_Mutation p.L578H 0.27 tolerated(0.6) benign(0.033) TCGA-WE-A8K4-01 18 2925360 2925360 G A LPIN2 Silent p.A600A 0.35 TCGA-WE-A8K4-01 18 31320165 31320165 C T ASXL3 Missense_Mutation p.R933W 0.40 probably_damaging(0.991) TCGA-WE-A8K4-01 18 50432474 50432474 T A DCC Missense_Mutation p.L158Q 0.25 deleterious(0) probably_damaging(0.935) TCGA-WE-A8K4-01 18 56203562 56203562 G A ALPK2 Missense_Mutation p.P1286L 0.38 tolerated(0.11) benign(0.037) TCGA-WE-A8K4-01 19 11453646 11453646 G A TMEM205 Missense_Mutation p.P139S 0.25 tolerated(0.43) benign(0.075) TCGA-WE-A8K4-01 19 11517431 11517431 G A RGL3 Silent p.D249D 0.28 TCGA-WE-A8K4-01 19 11725686 11725686 C T ZNF627 Missense_Mutation p.P59S 0.23 tolerated(0.32) benign(0.034) TCGA-WE-A8K4-01 19 12429404 12429404 A T ZNF563 3'UTR 0.26 TCGA-WE-A8K4-01 19 12692494 12692494 G A ZNF490 Missense_Mutation p.P132L 0.26 tolerated(0.07) benign(0) TCGA-WE-A8K4-01 19 1455466 1455466 C T APC2 Silent p.F202F 0.54 TCGA-WE-A8K4-01 19 1488202 1488202 G A PCSK4 Silent p.S124S 0.24 TCGA-WE-A8K4-01 19 15067416 15067416 G A SLC1A6 Silent p.I347I 0.26 TCGA-WE-A8K4-01 19 1556634 1556634 G A MEX3D Missense_Mutation p.T295I 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8K4-01 19 16641586 16641586 G A CHERP Silent p.I260I 0.37 TCGA-WE-A8K4-01 19 17091347 17091347 G T CPAMD8 Silent p.A562A 0.27 TCGA-WE-A8K4-01 19 17132960 17132960 G A CPAMD8 Missense_Mutation p.R89C 0.11 deleterious(0.02) benign(0.249) TCGA-WE-A8K4-01 19 17420447 17420447 G A DDA1 5'UTR 0.15 TCGA-WE-A8K4-01 19 17420449 17420449 C A DDA1 5'UTR 0.14 TCGA-WE-A8K4-01 19 18260539 18260539 C T MAST3 3'UTR 0.15 TCGA-WE-A8K4-01 19 1990159 1990159 G A BTBD2 Missense_Mutation p.R278C 0.40 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 19 22156113 22156113 G A ZNF208 Missense_Mutation p.H575Y 0.30 deleterious(0.03) possibly_damaging(0.472) TCGA-WE-A8K4-01 19 22156651 22156651 T A ZNF208 Missense_Mutation p.K395N 0.20 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 19 22156949 22156949 T C ZNF208 Missense_Mutation p.K296R 0.31 tolerated(0.61) benign(0.004) TCGA-WE-A8K4-01 19 22940264 22940264 G A ZNF99 Missense_Mutation p.S816F 0.30 deleterious(0.02) benign(0.002) TCGA-WE-A8K4-01 19 2918082 2918082 C T ZNF57 Missense_Mutation p.S488F 0.10 tolerated(0.21) probably_damaging(0.986) TCGA-WE-A8K4-01 19 33355659 33355659 G A SLC7A9 Silent p.S37S 0.24 TCGA-WE-A8K4-01 19 3551148 3551148 A C MFSD12 Missense_Mutation p.C115G 0.23 possibly_damaging(0.617) TCGA-WE-A8K4-01 19 35827128 35827128 G A CD22 Missense_Mutation p.R201Q 0.26 tolerated(1) benign(0.013) TCGA-WE-A8K4-01 19 35850002 35850002 C T FFAR3 Silent p.F70F 0.15 TCGA-WE-A8K4-01 19 36003641 36003641 G A DMKN Nonsense_Mutation p.Q160* 0.16 TCGA-WE-A8K4-01 19 36003652 36003652 C A DMKN Missense_Mutation p.G156V 0.17 deleterious(0) possibly_damaging(0.871) TCGA-WE-A8K4-01 19 36214881 36214881 C T KMT2B Missense_Mutation p.P1103S 0.26 benign(0.032) TCGA-WE-A8K4-01 19 36278784 36278784 C T ARHGAP33 Missense_Mutation p.P945L 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-A8K4-01 19 36303665 36303665 G A PRODH2 Missense_Mutation p.P91S 0.23 tolerated(0.58) benign(0.003) TCGA-WE-A8K4-01 19 36303666 36303666 G A PRODH2 Silent p.P90P 0.21 TCGA-WE-A8K4-01 19 36357171 36357171 G A KIRREL2 Missense_Mutation p.G635E 0.10 tolerated(0.06) benign(0.004) TCGA-WE-A8K4-01 19 36883757 36883757 T C ZFP82 Silent p.Q495Q 0.25 TCGA-WE-A8K4-01 19 37676894 37676894 G A ZNF585B Silent p.I515I 0.31 TCGA-WE-A8K4-01 19 37975342 37975342 C T ZNF570 Missense_Mutation p.P273L 0.25 tolerated(0.22) probably_damaging(1) TCGA-WE-A8K4-01 19 38126484 38126484 G A ZFP30 Missense_Mutation p.H320Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K4-01 19 38682911 38682911 C T SIPA1L3 Silent p.I1519I 0.25 TCGA-WE-A8K4-01 19 38935311 38935311 G A RYR1 Missense_Mutation p.E209K 0.21 possibly_damaging(0.771) TCGA-WE-A8K4-01 19 40433433 40433433 T C FCGBP Missense_Mutation p.N279S 0.26 benign(0.027) TCGA-WE-A8K4-01 19 41206032 41206032 G A ADCK4 Silent p.F361F 0.12 TCGA-WE-A8K4-01 19 41387570 41387570 C T CYP2A7 Silent p.E89E 0.31 TCGA-WE-A8K4-01 19 42221498 42221498 G A CEACAM5 Silent p.Q361Q 0.14 TCGA-WE-A8K4-01 19 4254420 4254420 C T CCDC94 Silent p.L113L 0.23 TCGA-WE-A8K4-01 19 42862405 42862405 C T MEGF8 Silent p.S1640S 0.29 TCGA-WE-A8K4-01 19 42914514 42914514 C T LIPE Missense_Mutation p.R455Q 0.41 tolerated(0.33) benign(0.126) TCGA-WE-A8K4-01 19 43026110 43026110 C T CEACAM1 Silent p.A223A 0.26 TCGA-WE-A8K4-01 19 43528920 43528920 C T PSG11 Missense_Mutation p.G118E 0.20 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K4-01 19 43773576 43773576 G A PSG9 Missense_Mutation p.P3L 0.19 deleterious(0.02) benign(0.018) TCGA-WE-A8K4-01 19 43922382 43922382 T C TEX101 Missense_Mutation p.S213P 0.21 deleterious(0.02) possibly_damaging(0.901) TCGA-WE-A8K4-01 19 43969717 43969717 G A LYPD3 Missense_Mutation p.P3S 0.26 tolerated_low_confidence(0.18) benign(0.042) TCGA-WE-A8K4-01 19 44470725 44470725 C T ZNF221 Silent p.S357S 0.17 TCGA-WE-A8K4-01 19 45284291 45284291 G A CBLC Silent p.R161R 0.11 TCGA-WE-A8K4-01 19 45975892 45975892 T A FOSB Missense_Mutation p.F213L 0.14 deleterious(0) possibly_damaging(0.786) TCGA-WE-A8K4-01 19 46195232 46195232 G A SNRPD2 5'UTR 0.28 TCGA-WE-A8K4-01 19 47030231 47030231 G A PPP5D1 Silent p.G62G 0.24 TCGA-WE-A8K4-01 19 47856779 47856779 C T DHX34 Silent p.I164I 0.19 TCGA-WE-A8K4-01 19 4817096 4817096 G A TICAM1 Nonsense_Mutation p.Q432* 0.28 TCGA-WE-A8K4-01 19 49165011 49165011 G C NTN5 Missense_Mutation p.R465G 0.28 tolerated(0.11) probably_damaging(0.93) TCGA-WE-A8K4-01 19 49912535 49912535 C T CCDC155 Nonsense_Mutation p.R381* 0.24 TCGA-WE-A8K4-01 19 49999638 49999638 C T RPS11 5'UTR 0.28 TCGA-WE-A8K4-01 19 50475246 50475246 C T VRK3 3'Flank 0.25 TCGA-WE-A8K4-01 19 50655845 50655845 C T IZUMO2 3'UTR 0.20 TCGA-WE-A8K4-01 19 5071027 5071027 C T KDM4B Silent p.A211A 0.17 TCGA-WE-A8K4-01 19 51729597 51729597 C T CD33 Missense_Mutation p.P244S 0.18 tolerated(0.49) benign(0.004) TCGA-WE-A8K4-01 19 51984918 51984918 C T CEACAM18 Silent p.A285A 0.32 TCGA-WE-A8K4-01 19 5218470 5218470 C T PTPRS Missense_Mutation p.D1337N 0.22 deleterious(0) possibly_damaging(0.881) TCGA-WE-A8K4-01 19 5218471 5218471 C T PTPRS Silent p.K1336K 0.22 TCGA-WE-A8K4-01 19 52394490 52394490 G T ZNF649 Missense_Mutation p.S300Y 0.21 tolerated(1) possibly_damaging(0.87) TCGA-WE-A8K4-01 19 52825479 52825479 C T ZNF480 Missense_Mutation p.H326Y 0.22 tolerated(0.9) possibly_damaging(0.486) TCGA-WE-A8K4-01 19 53117137 53117137 A C ZNF83 Missense_Mutation p.H227Q 0.25 deleterious(0) probably_damaging(0.971) TCGA-WE-A8K4-01 19 54848414 54848414 C T LILRA4 Missense_Mutation p.G318E 0.33 deleterious(0.01) benign(0.323) TCGA-WE-A8K4-01 19 55106131 55106131 G A LILRA1 Silent p.G24G 0.26 TCGA-WE-A8K4-01 19 56329478 56329478 C T NLRP11 Silent p.K21K 0.13 TCGA-WE-A8K4-01 19 56369462 56369462 G A NLRP4 Missense_Mutation p.E235K 0.22 tolerated(0.67) benign(0.314) TCGA-WE-A8K4-01 19 56370313 56370313 T A NLRP4 Missense_Mutation p.F518L 0.24 tolerated(0.14) benign(0.015) TCGA-WE-A8K4-01 19 56373451 56373451 G A NLRP4 Silent p.T704T 0.29 TCGA-WE-A8K4-01 19 56459481 56459481 C T NLRP8 Silent p.I71I 0.17 TCGA-WE-A8K4-01 19 5763275 5763275 G A CATSPERD Missense_Mutation p.E493K 0.18 tolerated(0.1) benign(0.117) TCGA-WE-A8K4-01 19 58048581 58048581 A G ZNF549 Missense_Mutation p.H70R 0.21 tolerated(0.35) possibly_damaging(0.82) TCGA-WE-A8K4-01 19 58992008 58992008 A G ZNF446 Missense_Mutation p.H423R 0.31 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 19 59010864 59010864 G A SLC27A5 Silent p.T554T 0.20 TCGA-WE-A8K4-01 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.21 deleterious(0) possibly_damaging(0.891) TCGA-WE-A8K4-01 19 6690717 6690717 C T C3 Missense_Mutation p.E1138K 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-WE-A8K4-01 19 6829896 6829896 G A VAV1 Silent p.R455R 0.18 TCGA-WE-A8K4-01 19 7083388 7083388 C T ZNF557 Missense_Mutation p.S309L 0.25 tolerated(0.69) benign(0) TCGA-WE-A8K4-01 19 7117074 7117074 G A INSR Missense_Mutation p.P1381L 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8K4-01 19 814917 814917 C T LPPR3 Missense_Mutation p.G190S 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-WE-A8K4-01 19 8175976 8175976 G A FBN3 Silent p.G1392G 0.27 TCGA-WE-A8K4-01 19 8201330 8201330 G A FBN3 Silent p.S429S 0.20 TCGA-WE-A8K4-01 19 8316091 8316091 C T CERS4 Missense_Mutation p.P44L 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 19 8841889 8841889 C T OR2Z1 Missense_Mutation p.P167S 0.25 tolerated(0.13) benign(0.153) TCGA-WE-A8K4-01 19 8842252 8842252 C T OR2Z1 Missense_Mutation p.L288F 0.17 deleterious(0.02) possibly_damaging(0.851) TCGA-WE-A8K4-01 19 9027278 9027278 G A MUC16 Missense_Mutation p.P12203L 0.14 benign(0.19) TCGA-WE-A8K4-01 19 9048317 9048317 G A MUC16 Missense_Mutation p.S11105F 0.19 benign(0.203) TCGA-WE-A8K4-01 19 9057066 9057066 G A MUC16 Missense_Mutation p.S10127F 0.28 benign(0.016) TCGA-WE-A8K4-01 19 9061812 9061812 C T MUC16 Missense_Mutation p.G8545E 0.32 unknown(0) TCGA-WE-A8K4-01 19 9066211 9066211 G A MUC16 Missense_Mutation p.P7079S 0.16 unknown(0) TCGA-WE-A8K4-01 19 9075035 9075035 G A MUC16 Silent p.L4137L 0.19 TCGA-WE-A8K4-01 19 9086390 9086390 C T MUC16 Missense_Mutation p.E1809K 0.26 unknown(0) TCGA-WE-A8K4-01 19 9087746 9087746 C T MUC16 Missense_Mutation p.E1357K 0.16 unknown(0) TCGA-WE-A8K4-01 19 9090300 9090300 G A MUC16 Silent p.I505I 0.22 TCGA-WE-A8K4-01 19 9091730 9091730 C T MUC16 Missense_Mutation p.E29K 0.30 unknown(0) TCGA-WE-A8K4-01 19 9578713 9578713 G A ZNF560 Nonsense_Mutation p.Q304* 0.26 TCGA-WE-A8K4-01 1 104112582 104112582 C T AMY2B Intron 0.15 TCGA-WE-A8K4-01 1 114439047 114439047 T G AP4B1 Missense_Mutation p.E448A 0.27 deleterious(0.01) benign(0.347) TCGA-WE-A8K4-01 1 114447265 114447265 A G AP4B1 Silent p.D25D 0.24 TCGA-WE-A8K4-01 1 115576662 115576662 C T TSHB Silent p.F77F 0.27 TCGA-WE-A8K4-01 1 11918302 11918302 C T NPPB Silent p.R119R 0.16 TCGA-WE-A8K4-01 1 12835138 12835138 C T PRAMEF12 Missense_Mutation p.A43V 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-WE-A8K4-01 1 13330649 13330649 C T PRAMEF3 Missense_Mutation p.E213K 0.39 deleterious(0.04) benign(0.254) TCGA-WE-A8K4-01 1 144828806 144828806 G A NBPF9 3'UTR 0.12 TCGA-WE-A8K4-01 1 144955255 144955255 C T PDE4DIP Missense_Mutation p.R60Q 0.14 tolerated(0.38) benign(0.271) TCGA-WE-A8K4-01 1 144994749 144994749 G A PDE4DIP 5'UTR 0.07 TCGA-WE-A8K4-01 1 150429932 150429932 C T RPRD2 Nonsense_Mutation p.Q347* 0.13 TCGA-WE-A8K4-01 1 150445035 150445035 C T RPRD2 Missense_Mutation p.P1204L 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-A8K4-01 1 151156836 151156836 G A VPS72 Silent p.L173L 0.24 TCGA-WE-A8K4-01 1 151751698 151751698 G A TDRKH Missense_Mutation p.R148C 0.17 deleterious(0) probably_damaging(0.99) TCGA-WE-A8K4-01 1 151774160 151774160 C T LINGO4 Missense_Mutation p.E341K 0.21 tolerated(0.11) probably_damaging(0.989) TCGA-WE-A8K4-01 1 152084928 152084928 C T TCHH Silent p.K255K 0.22 TCGA-WE-A8K4-01 1 152326553 152326553 C T FLG2 Missense_Mutation p.E1237K 0.17 unknown(0) TCGA-WE-A8K4-01 1 152552291 152552291 G A LCE3D Missense_Mutation p.S41F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K4-01 1 152681577 152681577 A T LCE4A Missense_Mutation p.Q9L 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-WE-A8K4-01 1 152770512 152770512 C T LCE1D Missense_Mutation p.S81F 0.42 unknown(0) TCGA-WE-A8K4-01 1 152944653 152944653 G A SPRR4 3'UTR 0.36 TCGA-WE-A8K4-01 1 153309677 153309677 G A PGLYRP4 Missense_Mutation p.T308I 0.28 deleterious(0.01) benign(0.118) TCGA-WE-A8K4-01 1 154516444 154516444 C T TDRD10 Missense_Mutation p.S170F 0.13 deleterious(0.03) probably_damaging(0.972) TCGA-WE-A8K4-01 1 155039207 155039207 T C EFNA4 Silent p.L39L 0.11 TCGA-WE-A8K4-01 1 155154415 155154415 C T TRIM46 Missense_Mutation p.P559L 0.24 tolerated(0.23) probably_damaging(0.999) TCGA-WE-A8K4-01 1 155735952 155735952 G A GON4L Silent p.S1104S 0.18 TCGA-WE-A8K4-01 1 156309463 156309463 A G TSACC 5'UTR 0.09 TCGA-WE-A8K4-01 1 156520116 156520116 A T IQGAP3 Missense_Mutation p.W588R 0.13 deleterious(0) probably_damaging(0.987) TCGA-WE-A8K4-01 1 156622528 156622528 C T BCAN Missense_Mutation p.P596S 0.16 tolerated(0.16) possibly_damaging(0.632) TCGA-WE-A8K4-01 1 156628524 156628524 C T BCAN Missense_Mutation p.P876L 0.23 tolerated(0.2) possibly_damaging(0.662) TCGA-WE-A8K4-01 1 156849818 156849818 C T NTRK1 Missense_Mutation p.R692C 0.43 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K4-01 1 158225839 158225839 G A CD1A Missense_Mutation p.G124E 0.22 deleterious(0.04) benign(0.418) TCGA-WE-A8K4-01 1 158262590 158262590 C T CD1C Missense_Mutation p.S272F 0.22 deleterious(0) possibly_damaging(0.652) TCGA-WE-A8K4-01 1 158435644 158435644 C T OR10K1 Missense_Mutation p.A98V 0.13 tolerated(0.09) benign(0.014) TCGA-WE-A8K4-01 1 158577148 158577148 G A OR10Z1 Missense_Mutation p.G307E 0.22 tolerated(0.18) benign(0.172) TCGA-WE-A8K4-01 1 158618310 158618310 G A SPTA1 Silent p.L1235L 0.56 TCGA-WE-A8K4-01 1 158622424 158622424 G A SPTA1 Missense_Mutation p.R1070W 0.24 deleterious(0.02) probably_damaging(0.912) TCGA-WE-A8K4-01 1 158687515 158687515 G A OR6K3 Missense_Mutation p.R131C 0.22 deleterious(0) benign(0.119) TCGA-WE-A8K4-01 1 158943506 158943506 C T PYHIN1 Missense_Mutation p.P477S 0.19 tolerated_low_confidence(0.72) benign(0.007) TCGA-WE-A8K4-01 1 159043223 159043223 C T AIM2 Missense_Mutation p.D23N 0.39 tolerated(0.53) benign(0.058) TCGA-WE-A8K4-01 1 159779223 159779223 C T FCRL6 Silent p.H212H 0.16 TCGA-WE-A8K4-01 1 160147431 160147431 G A ATP1A4 Missense_Mutation p.E905K 0.19 tolerated(0.09) benign(0.438) TCGA-WE-A8K4-01 1 160313076 160313076 G A NCSTN 5'UTR 0.20 TCGA-WE-A8K4-01 1 160651198 160651198 T A CD48 Missense_Mutation p.Y149F 0.17 tolerated(0.14) benign(0.063) TCGA-WE-A8K4-01 1 161039486 161039486 G T ARHGAP30 5'UTR 0.12 TCGA-WE-A8K4-01 1 162824610 162824610 G A C1orf110 Missense_Mutation p.S285F 0.34 tolerated(0.75) benign(0.207) TCGA-WE-A8K4-01 1 169510127 169510127 G A F5 Missense_Mutation p.P1401S 0.19 tolerated_low_confidence(0.8) unknown(0) TCGA-WE-A8K4-01 1 169529841 169529841 G A F5 Silent p.I179I 0.16 TCGA-WE-A8K4-01 1 171083266 171083266 G A FMO3 Missense_Mutation p.G316E 0.15 deleterious(0.03) possibly_damaging(0.85) TCGA-WE-A8K4-01 1 172571885 172571885 C T SUCO Missense_Mutation p.P1075S 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 1 173155826 173155826 G A TNFSF4 Silent p.F127F 0.25 TCGA-WE-A8K4-01 1 173526558 173526558 C T SLC9C2 Missense_Mutation p.G379E 0.18 tolerated(0.21) probably_damaging(1) TCGA-WE-A8K4-01 1 173616047 173616047 C T ANKRD45 Missense_Mutation p.R145K 0.22 tolerated(0.89) benign(0.002) TCGA-WE-A8K4-01 1 173628444 173628444 G A ANKRD45 Silent p.P38P 0.32 TCGA-WE-A8K4-01 1 175046821 175046821 C T TNN Silent p.N89N 0.19 TCGA-WE-A8K4-01 1 17531724 17531724 G A PADI1 Silent p.K4K 0.19 TCGA-WE-A8K4-01 1 176563861 176563861 G A PAPPA2 Missense_Mutation p.R374Q 0.24 tolerated(0.54) benign(0.003) TCGA-WE-A8K4-01 1 176671805 176671805 G A PAPPA2 Missense_Mutation p.G1100E 0.14 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 1 177249609 177249609 C T BRINP2 Missense_Mutation p.P433S 0.16 tolerated(0.4) benign(0.039) TCGA-WE-A8K4-01 1 17740121 17740121 G A RCC2 Silent p.P373P 0.27 TCGA-WE-A8K4-01 1 17740122 17740122 G C RCC2 Missense_Mutation p.P373R 0.27 deleterious(0.02) benign(0.277) TCGA-WE-A8K4-01 1 178411966 178411966 G A RASAL2 Missense_Mutation p.E362K 0.23 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 1 179304701 179304701 C T SOAT1 Missense_Mutation p.L80F 0.10 tolerated(0.1) benign(0.216) TCGA-WE-A8K4-01 1 179494481 179494481 G A AXDND1 Missense_Mutation p.E837K 0.18 tolerated(0.82) benign(0.021) TCGA-WE-A8K4-01 1 181701846 181701846 C T CACNA1E Missense_Mutation p.S875F 0.27 tolerated(0.05) benign(0.029) TCGA-WE-A8K4-01 1 181701936 181701936 T C CACNA1E Missense_Mutation p.V905A 0.23 tolerated(0.59) benign(0.153) TCGA-WE-A8K4-01 1 181726166 181726166 C T CACNA1E Silent p.P1411P 0.22 TCGA-WE-A8K4-01 1 183205699 183205699 C T LAMC2 Missense_Mutation p.S854L 0.38 deleterious(0.01) benign(0.002) TCGA-WE-A8K4-01 1 185815224 185815224 T C HMCN1 Missense_Mutation p.V112A 0.28 probably_damaging(0.959) TCGA-WE-A8K4-01 1 186644518 186644518 C T PTGS2 Missense_Mutation p.G423D 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-WE-A8K4-01 1 186644519 186644519 C T PTGS2 Missense_Mutation p.G423S 0.33 tolerated(0.08) benign(0.36) TCGA-WE-A8K4-01 1 18960899 18960899 C - PAX7 Frame_Shift_Del p.H64Tfs*51 0.22 TCGA-WE-A8K4-01 1 190068012 190068012 G C BRINP3 Silent p.A479A 0.11 TCGA-WE-A8K4-01 1 192129561 192129561 C T RGS18 Missense_Mutation p.S92F 0.17 deleterious(0) probably_damaging(0.971) TCGA-WE-A8K4-01 1 196799649 196799649 G A CFHR1 Silent p.G209G 0.36 TCGA-WE-A8K4-01 1 197398648 197398648 C T CRB1 Missense_Mutation p.L916F 0.20 deleterious(0) benign(0.202) TCGA-WE-A8K4-01 1 198665870 198665870 C T PTPRC Missense_Mutation p.P44S 0.43 tolerated_low_confidence(0.54) benign(0.021) TCGA-WE-A8K4-01 1 198828180 198828180 G C MIR181A1 RNA 0.13 TCGA-WE-A8K4-01 1 200877860 200877860 G A C1orf106 Missense_Mutation p.E193K 0.19 tolerated(0.07) possibly_damaging(0.457) TCGA-WE-A8K4-01 1 200972894 200972894 G A KIF21B Silent p.I344I 0.29 TCGA-WE-A8K4-01 1 201915303 201915303 C T LMOD1 Missense_Mutation p.E56K 0.43 benign(0.403) TCGA-WE-A8K4-01 1 202287394 202287394 G C LGR6 Missense_Mutation p.A655P 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-WE-A8K4-01 1 204170910 204170910 G A GOLT1A Silent p.I49I 0.20 TCGA-WE-A8K4-01 1 204587039 204587039 C A LRRN2 Missense_Mutation p.R694S 0.26 deleterious_low_confidence(0.01) benign(0.257) TCGA-WE-A8K4-01 1 204589039 204589039 G A LRRN2 Missense_Mutation p.P28S 0.23 tolerated(0.66) unknown(0) TCGA-WE-A8K4-01 1 20501557 20501557 C T PLA2G2C Missense_Mutation p.G41E 0.15 deleterious(0.05) probably_damaging(0.966) TCGA-WE-A8K4-01 1 205031047 205031047 A G CNTN2 Missense_Mutation p.N343S 0.24 tolerated(0.21) benign(0) TCGA-WE-A8K4-01 1 205496985 205496985 G A CDK18 Missense_Mutation p.D295N 0.19 deleterious(0) probably_damaging(0.985) TCGA-WE-A8K4-01 1 205744129 205744129 G A RAB7L1 5'UTR 0.11 TCGA-WE-A8K4-01 1 207640030 207640030 G A CR2 Missense_Mutation p.G73E 0.20 deleterious(0) probably_damaging(0.974) TCGA-WE-A8K4-01 1 209803228 209803228 G A LAMB3 Missense_Mutation p.P329L 0.19 deleterious(0.01) benign(0.049) TCGA-WE-A8K4-01 1 212798527 212798527 A T FAM71A Missense_Mutation p.Q103L 0.20 tolerated(0.16) benign(0.022) TCGA-WE-A8K4-01 1 213445971 213445971 G T RPS6KC1 Missense_Mutation p.M1065I 0.24 tolerated(0.12) benign(0.01) TCGA-WE-A8K4-01 1 214706144 214706144 G A PTPN14 Intron 0.19 TCGA-WE-A8K4-01 1 215853636 215853636 C T USH2A Missense_Mutation p.G4050E 0.45 probably_damaging(0.999) TCGA-WE-A8K4-01 1 216138818 216138818 C T USH2A Missense_Mutation p.E2321K 0.18 benign(0.033) TCGA-WE-A8K4-01 1 216462646 216462646 T C USH2A Silent p.R649R 0.42 TCGA-WE-A8K4-01 1 22213976 22213976 G A HSPG2 Missense_Mutation p.P299S 0.31 benign(0.231) TCGA-WE-A8K4-01 1 223285437 223285437 C T TLR5 Missense_Mutation p.D313N 0.15 tolerated(0.6) benign(0.012) TCGA-WE-A8K4-01 1 225688729 225688729 G A ENAH Nonsense_Mutation p.Q549* 0.37 TCGA-WE-A8K4-01 1 228434466 228434466 C T OBSCN Missense_Mutation p.A1424V 0.14 benign(0.375) TCGA-WE-A8K4-01 1 229654072 229654072 G A ABCB10 Missense_Mutation p.R691C 0.40 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K4-01 1 22973814 22973814 C T C1QC Silent p.P92P 0.19 TCGA-WE-A8K4-01 1 22973815 22973815 C T C1QC Missense_Mutation p.P93S 0.15 tolerated(0.56) benign(0.026) TCGA-WE-A8K4-01 1 235388072 235388072 G A ARID4B Missense_Mutation p.P306S 0.16 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K4-01 1 236645662 236645662 T C EDARADD Silent p.L121L 0.23 TCGA-WE-A8K4-01 1 237656290 237656290 G T RYR2 Missense_Mutation p.G622W 0.43 probably_damaging(0.995) TCGA-WE-A8K4-01 1 23768174 23768174 C T ASAP3 Missense_Mutation p.E241K 0.22 deleterious(0.02) possibly_damaging(0.734) TCGA-WE-A8K4-01 1 241959628 241959628 G A WDR64 Missense_Mutation p.G1040S 0.40 tolerated(0.96) benign(0.002) TCGA-WE-A8K4-01 1 242428750 242428750 C T PLD5 Missense_Mutation p.G166S 0.40 deleterious(0) probably_damaging(0.989) TCGA-WE-A8K4-01 1 247241995 247241995 C T ZNF670 5'UTR 0.20 TCGA-WE-A8K4-01 1 247752321 247752321 C T OR2G2 Silent p.S220S 0.16 TCGA-WE-A8K4-01 1 247836140 247836140 G A OR13G1 Silent p.I68I 0.16 TCGA-WE-A8K4-01 1 248059037 248059037 G A OR2W3 Missense_Mutation p.R50Q 0.21 tolerated(0.29) benign(0.016) TCGA-WE-A8K4-01 1 248059530 248059530 C T OR2W3 Silent p.I214I 0.17 TCGA-WE-A8K4-01 1 248263579 248263579 G A OR2L13 Missense_Mutation p.R301K 0.19 tolerated(0.52) benign(0) TCGA-WE-A8K4-01 1 248403010 248403010 G A OR2M4 Missense_Mutation p.M260I 0.36 deleterious(0.04) benign(0.097) TCGA-WE-A8K4-01 1 248437096 248437096 G A OR2T33 Silent p.T7T 0.16 TCGA-WE-A8K4-01 1 248458365 248458365 G A OR2T12 Silent p.I172I 0.22 TCGA-WE-A8K4-01 1 248512781 248512781 C T OR14C36 Silent p.A235A 0.28 TCGA-WE-A8K4-01 1 248790154 248790154 C T OR2T11 Silent p.V92V 0.39 TCGA-WE-A8K4-01 1 25683301 25683301 C T TMEM50A Missense_Mutation p.P129S 0.25 deleterious(0.03) probably_damaging(0.982) TCGA-WE-A8K4-01 1 25735302 25735302 G A RHCE Silent p.F69F 0.17 TCGA-WE-A8K4-01 1 27089700 27089700 C T ARID1A Missense_Mutation p.P886S 0.23 unknown(0) TCGA-WE-A8K4-01 1 27700877 27700877 G A FCN3 Missense_Mutation p.P53S 0.34 tolerated(0.06) probably_damaging(0.985) TCGA-WE-A8K4-01 1 27736542 27736542 G A WASF2 Missense_Mutation p.P328L 0.24 tolerated(0.32) unknown(0) TCGA-WE-A8K4-01 1 28271918 28271918 G A SMPDL3B Silent p.K79K 0.25 TCGA-WE-A8K4-01 1 31840318 31840318 C T FABP3 Silent p.G90G 0.23 TCGA-WE-A8K4-01 1 33059278 33059278 T G ZBTB8A Missense_Mutation p.I249S 0.33 benign(0.021) TCGA-WE-A8K4-01 1 34209148 34209148 C T CSMD2 Missense_Mutation p.E596K 0.25 deleterious(0.01) possibly_damaging(0.794) TCGA-WE-A8K4-01 1 35496175 35496175 T G ZMYM6 Missense_Mutation p.K22N 0.31 deleterious(0.01) benign(0.357) TCGA-WE-A8K4-01 1 36785449 36785449 G A SH3D21 Silent p.K395K 0.21 TCGA-WE-A8K4-01 1 38040286 38040286 G A GNL2 Missense_Mutation p.R428W 0.32 deleterious(0) probably_damaging(0.955) TCGA-WE-A8K4-01 1 38040287 38040287 G A GNL2 Silent p.F427F 0.33 TCGA-WE-A8K4-01 1 38155498 38155498 G A C1orf109 Missense_Mutation p.P19S 0.30 tolerated(0.49) benign(0.302) TCGA-WE-A8K4-01 1 38192845 38192845 G A EPHA10 Silent p.V567V 0.22 TCGA-WE-A8K4-01 1 39800827 39800827 G A MACF1 Intron 0.29 TCGA-WE-A8K4-01 1 39878365 39878365 C T KIAA0754 Missense_Mutation p.P674S 0.20 unknown(0) TCGA-WE-A8K4-01 1 43880875 43880875 C T SZT2 Silent p.P207P 0.24 TCGA-WE-A8K4-01 1 44069433 44069433 C T PTPRF Silent p.F870F 0.25 TCGA-WE-A8K4-01 1 44433163 44433163 C T IPO13 Silent p.I930I 0.18 TCGA-WE-A8K4-01 1 47501543 47501543 G A CYP4X1 Silent p.S186S 0.25 TCGA-WE-A8K4-01 1 47653029 47653029 G A PDZK1IP1 Silent p.I46I 0.24 TCGA-WE-A8K4-01 1 57347136 57347136 G A C8A Silent p.Q161Q 0.25 TCGA-WE-A8K4-01 1 57480567 57480567 G A DAB1 Missense_Mutation p.S478L 0.22 deleterious(0.01) possibly_damaging(0.783) TCGA-WE-A8K4-01 1 6314060 6314060 G A GPR153 Silent p.I168I 0.22 TCGA-WE-A8K4-01 1 66102592 66102592 G A LEPR Missense_Mutation p.G1131E 0.28 tolerated(0.34) benign(0.059) TCGA-WE-A8K4-01 1 68904625 68904625 C T RPE65 Missense_Mutation p.G333E 0.18 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K4-01 1 70488837 70488837 G A LRRC7 Missense_Mutation p.R487K 0.17 tolerated(0.66) benign(0.001) TCGA-WE-A8K4-01 1 75039016 75039016 C T C1orf173 Missense_Mutation p.G793E 0.37 deleterious(0.05) benign(0.316) TCGA-WE-A8K4-01 1 75622621 75622621 G A LHX8 Missense_Mutation p.S285N 0.26 tolerated(0.24) benign(0.008) TCGA-WE-A8K4-01 1 85718250 85718250 T C C1orf52 3'UTR 0.18 TCGA-WE-A8K4-01 1 89734435 89734435 C T GBP5 Missense_Mutation p.E99K 0.21 deleterious(0.01) probably_damaging(0.958) TCGA-WE-A8K4-01 1 9083026 9083026 C T SLC2A7 Missense_Mutation p.G88S 0.24 deleterious(0.03) possibly_damaging(0.906) TCGA-WE-A8K4-01 1 92185575 92185575 G A TGFBR3 Missense_Mutation p.P430S 0.30 tolerated(0.17) benign(0.057) TCGA-WE-A8K4-01 1 98157340 98157340 G A DPYD Missense_Mutation p.P232L 0.23 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K4-01 1 986163 986163 C T AGRN Silent p.G1733G 0.23 TCGA-WE-A8K4-01 1 986164 986164 C T AGRN Missense_Mutation p.R1734C 0.23 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 20 1903086 1903086 C T SIRPA Silent p.S294S 0.29 TCGA-WE-A8K4-01 20 21142934 21142934 C T RP4-777D9.2 Intron 0.38 TCGA-WE-A8K4-01 20 23065728 23065728 C T CD93 Missense_Mutation p.E368K 0.26 tolerated(0.31) benign(0.023) TCGA-WE-A8K4-01 20 30458384 30458384 C T DUSP15 5'UTR 0.33 TCGA-WE-A8K4-01 20 30689326 30689326 G A HCK 3'UTR 0.19 TCGA-WE-A8K4-01 20 31041268 31041268 G A C20orf112 Silent p.L202L 0.33 TCGA-WE-A8K4-01 20 31672797 31672797 G A BPIFB4 Silent p.G259G 0.32 TCGA-WE-A8K4-01 20 31767424 31767424 C T BPIFA2 Silent p.I220I 0.11 TCGA-WE-A8K4-01 20 31768374 31768374 G A BPIFA2 3'UTR 0.46 TCGA-WE-A8K4-01 20 34054824 34054824 C T CEP250 Missense_Mutation p.R176C 0.22 probably_damaging(1) TCGA-WE-A8K4-01 20 34096004 34096004 G A CEP250 Silent p.R2297R 0.12 TCGA-WE-A8K4-01 20 36962847 36962847 G A BPI Missense_Mutation p.D434N 0.46 tolerated(0.19) benign(0.001) TCGA-WE-A8K4-01 20 39729874 39729874 C T TOP1 Missense_Mutation p.P397S 0.16 tolerated(0.14) benign(0.09) TCGA-WE-A8K4-01 20 41306568 41306568 C T PTPRT Missense_Mutation p.R364Q 0.15 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 20 43607151 43607151 C T STK4 Missense_Mutation p.P62S 0.18 tolerated(0.08) possibly_damaging(0.543) TCGA-WE-A8K4-01 20 45702806 45702806 T C EYA2 Missense_Mutation p.S165P 0.26 deleterious(0) benign(0.003) TCGA-WE-A8K4-01 20 4770281 4770281 G A RASSF2 Silent p.T200T 0.21 TCGA-WE-A8K4-01 20 4770282 4770282 G A RASSF2 Missense_Mutation p.T200I 0.21 deleterious(0.01) possibly_damaging(0.891) TCGA-WE-A8K4-01 20 48263584 48263584 G A B4GALT5 Silent p.T94T 0.16 TCGA-WE-A8K4-01 20 49575365 49575365 C T MOCS3 5'UTR 0.17 TCGA-WE-A8K4-01 20 61296517 61296517 G A SLCO4A1 Intron 0.46 TCGA-WE-A8K4-01 21 14982825 14982825 G A POTED Silent p.K92K 0.32 TCGA-WE-A8K4-01 21 15753792 15753792 A C HSPA13 Missense_Mutation p.V33G 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 21 19629440 19629440 A G CHODL Silent p.E181E 0.18 TCGA-WE-A8K4-01 21 19775839 19775839 C T TMPRSS15 Missense_Mutation p.G34E 0.29 deleterious(0) probably_damaging(0.972) TCGA-WE-A8K4-01 21 22656515 22656515 G A NCAM2 Silent p.A44A 0.26 TCGA-WE-A8K4-01 21 27852706 27852706 G A CYYR1 Silent p.I73I 0.18 TCGA-WE-A8K4-01 21 30378954 30378954 C T RWDD2B Nonsense_Mutation p.W248* 0.21 TCGA-WE-A8K4-01 21 32185571 32185571 G A KRTAP8-1 5'Flank 0.24 TCGA-WE-A8K4-01 21 34030142 34030142 G A SYNJ1 Missense_Mutation p.P821L 0.13 deleterious(0) probably_damaging(0.95) TCGA-WE-A8K4-01 21 39762919 39762919 G A ERG Missense_Mutation p.P313L 0.27 deleterious(0) possibly_damaging(0.54) TCGA-WE-A8K4-01 21 41447104 41447104 T G DSCAM Missense_Mutation p.N1583T 0.12 tolerated(0.32) benign(0.009) TCGA-WE-A8K4-01 21 42815768 42815768 C T MX1 Missense_Mutation p.T328I 0.23 deleterious(0) possibly_damaging(0.706) TCGA-WE-A8K4-01 21 42815769 42815769 C T MX1 Silent p.T328T 0.22 TCGA-WE-A8K4-01 21 43704694 43704694 C T ABCG1 Silent p.F253F 0.17 TCGA-WE-A8K4-01 21 44840120 44840120 C G SIK1 Silent p.T322T 0.33 TCGA-WE-A8K4-01 21 45993691 45993691 C T KRTAP10-4 Missense_Mutation p.S19F 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-WE-A8K4-01 21 46086663 46086663 G A KRTAP12-2 Silent p.P47P 0.23 TCGA-WE-A8K4-01 21 46932344 46932344 C T COL18A1 3'UTR 0.31 TCGA-WE-A8K4-01 21 47636325 47636325 G A LSS Missense_Mutation p.P254L 0.24 deleterious(0.04) benign(0.002) TCGA-WE-A8K4-01 21 47704041 47704041 G A MCM3AP Missense_Mutation p.P387L 0.19 tolerated(0.3) benign(0.003) TCGA-WE-A8K4-01 21 47959794 47959794 G C DIP2A Silent p.S642S 0.30 TCGA-WE-A8K4-01 21 48019183 48019183 G A S100B 3'UTR 0.23 TCGA-WE-A8K4-01 22 20783602 20783602 C T SCARF2 Missense_Mutation p.A489T 0.33 tolerated(0.14) benign(0.259) TCGA-WE-A8K4-01 22 20783603 20783603 C T SCARF2 Silent p.K488K 0.31 TCGA-WE-A8K4-01 22 20819536 20819536 G A KLHL22 Missense_Mutation p.L241F 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-WE-A8K4-01 22 22937488 22937488 T A IGLV3-32 Missense_Mutation p.D102E 0.28 deleterious(0.03) possibly_damaging(0.774) TCGA-WE-A8K4-01 22 25280087 25280087 C T SGSM1 Silent p.I576I 0.21 TCGA-WE-A8K4-01 22 26707874 26707874 G A SEZ6L Missense_Mutation p.E608K 0.22 deleterious(0) probably_damaging(0.933) TCGA-WE-A8K4-01 22 29193094 29193094 G A XBP1 Silent p.L142L 0.36 TCGA-WE-A8K4-01 22 29193095 29193095 G A XBP1 Silent p.A141A 0.35 TCGA-WE-A8K4-01 22 29654912 29654912 G A EMID1 Silent p.R437R 0.22 TCGA-WE-A8K4-01 22 41625575 41625575 C T L3MBTL2 Silent p.P640P 0.16 TCGA-WE-A8K4-01 22 42144211 42144211 C T MEI1 Missense_Mutation p.S594F 0.25 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K4-01 22 42204886 42204886 G A CCDC134 5'UTR 0.20 TCGA-WE-A8K4-01 22 42423148 42423148 C T WBP2NL Missense_Mutation p.S298F 0.24 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-WE-A8K4-01 22 43231495 43231495 G A ARFGAP3 Missense_Mutation p.S89F 0.29 deleterious(0.02) probably_damaging(0.95) TCGA-WE-A8K4-01 22 43565523 43565523 G T TTLL12 Missense_Mutation p.P543T 0.24 tolerated(0.15) benign(0.016) TCGA-WE-A8K4-01 22 51042684 51042684 C T MAPK8IP2 Silent p.F318F 0.59 TCGA-WE-A8K4-01 2 101010004 101010004 G A CHST10 Silent p.D258D 0.23 TCGA-WE-A8K4-01 2 10132179 10132179 G A GRHL1 Missense_Mutation p.D456N 0.22 deleterious(0) possibly_damaging(0.886) TCGA-WE-A8K4-01 2 101644579 101644579 G A TBC1D8 Silent p.I779I 0.27 TCGA-WE-A8K4-01 2 102957274 102957274 C T IL1RL1 Missense_Mutation p.S199F 0.29 tolerated(0.27) benign(0.045) TCGA-WE-A8K4-01 2 102965684 102965684 G A IL1RL1 Silent p.G421G 0.21 TCGA-WE-A8K4-01 2 103040691 103040691 G A IL18RAP Silent p.K132K 0.15 TCGA-WE-A8K4-01 2 103300603 103300603 C T SLC9A2 Silent p.V411V 0.17 TCGA-WE-A8K4-01 2 107459779 107459779 G A ST6GAL2 Missense_Mutation p.P219S 0.37 probably_damaging(0.984) TCGA-WE-A8K4-01 2 108921088 108921088 G A SULT1C2 Missense_Mutation p.R156K 0.21 tolerated(0.2) benign(0.06) TCGA-WE-A8K4-01 2 109088060 109088060 T C GCC2 Silent p.L759L 0.29 TCGA-WE-A8K4-01 2 109513671 109513671 C T EDAR Missense_Mutation p.E347K 0.07 tolerated(0.2) probably_damaging(0.986) TCGA-WE-A8K4-01 2 11354576 11354576 G A ROCK2 Silent p.G650G 0.24 TCGA-WE-A8K4-01 2 113950003 113950003 C T PSD4 Missense_Mutation p.P559S 0.30 deleterious(0.03) benign(0.204) TCGA-WE-A8K4-01 2 11913750 11913750 C T LPIN1 Missense_Mutation p.L250F 0.23 tolerated(0.37) benign(0.275) TCGA-WE-A8K4-01 2 119915273 119915273 G T C1QL2 Silent p.T191T 0.21 TCGA-WE-A8K4-01 2 120194953 120194953 C T TMEM37 Silent p.F170F 0.29 TCGA-WE-A8K4-01 2 120362291 120362291 A G PCDP1 Missense_Mutation p.N279D 0.16 tolerated(0.72) benign(0.002) TCGA-WE-A8K4-01 2 120439032 120439032 G A TMEM177 Silent p.R201R 0.18 TCGA-WE-A8K4-01 2 128366331 128366331 C T MYO7B Missense_Mutation p.P898S 0.33 tolerated(0.73) benign(0.223) TCGA-WE-A8K4-01 2 130832201 130832201 G A POTEF Silent p.I948I 0.16 TCGA-WE-A8K4-01 2 131521437 131521437 G A AMER3 Missense_Mutation p.D598N 0.26 tolerated(0.1) benign(0.048) TCGA-WE-A8K4-01 2 135214250 135214250 C T TMEM163 3'UTR 0.35 TCGA-WE-A8K4-01 2 135781075 135781075 C T MAP3K19 Intron 0.18 TCGA-WE-A8K4-01 2 136548268 136548268 C T LCT Silent p.R1765R 0.17 TCGA-WE-A8K4-01 2 137814302 137814302 G A THSD7B Missense_Mutation p.R151Q 0.19 tolerated(0.59) possibly_damaging(0.521) TCGA-WE-A8K4-01 2 138378280 138378280 G A THSD7B Silent p.Q1264Q 0.28 TCGA-WE-A8K4-01 2 138425356 138425356 A C THSD7B Missense_Mutation p.K1558T 0.21 deleterious(0.01) unknown(0) TCGA-WE-A8K4-01 2 141079649 141079649 G A LRP1B Missense_Mutation p.P4175S 0.25 possibly_damaging(0.641) TCGA-WE-A8K4-01 2 141081539 141081539 C T LRP1B Missense_Mutation p.G4146D 0.15 probably_damaging(0.931) TCGA-WE-A8K4-01 2 141232808 141232808 C T LRP1B Missense_Mutation p.R3175K 0.21 benign(0.067) TCGA-WE-A8K4-01 2 141816498 141816498 C T LRP1B Silent p.E454E 0.29 TCGA-WE-A8K4-01 2 149220225 149220225 G A MBD5 Missense_Mutation p.G63D 0.26 deleterious(0) unknown(0) TCGA-WE-A8K4-01 2 152534213 152534213 C T NEB Missense_Mutation p.E1214K 0.22 probably_damaging(0.985) TCGA-WE-A8K4-01 2 166245571 166245571 G A SCN2A Missense_Mutation p.G1752E 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 2 166755211 166755211 A T TTC21B Missense_Mutation p.L979I 0.21 deleterious(0.02) benign(0.362) TCGA-WE-A8K4-01 2 167094678 167094678 G A SCN9A Silent p.L1232L 0.60 TCGA-WE-A8K4-01 2 167760256 167760256 G A XIRP2 Silent p.R88R 0.25 TCGA-WE-A8K4-01 2 168099259 168099259 C T XIRP2 Missense_Mutation p.P453S 0.21 possibly_damaging(0.604) TCGA-WE-A8K4-01 2 168101562 168101562 G A XIRP2 Silent p.L1220L 0.24 TCGA-WE-A8K4-01 2 170063506 170063506 C T LRP2 Missense_Mutation p.D2242N 0.15 probably_damaging(1) TCGA-WE-A8K4-01 2 170090032 170090032 G A LRP2 Missense_Mutation p.R1663C 0.15 possibly_damaging(0.586) TCGA-WE-A8K4-01 2 171260766 171260766 C T MYO3B Nonsense_Mutation p.Q763* 0.19 TCGA-WE-A8K4-01 2 172411187 172411187 A G CYBRD1 Silent p.P237P 0.21 TCGA-WE-A8K4-01 2 179434990 179434990 G A TTN Missense_Mutation p.P25290L 0.24 TCGA-WE-A8K4-01 2 179595660 179595660 T A TTN Missense_Mutation p.N5911I 0.27 TCGA-WE-A8K4-01 2 179606474 179606474 G A TTN Missense_Mutation p.A3829V 0.21 TCGA-WE-A8K4-01 2 179629506 179629506 G A TTN Nonsense_Mutation p.Q3246* 0.28 TCGA-WE-A8K4-01 2 179641565 179641565 C T TTN Missense_Mutation p.E1676K 0.25 TCGA-WE-A8K4-01 2 179720074 179720074 C T CCDC141 Silent p.E1020E 0.31 TCGA-WE-A8K4-01 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.10 TCGA-WE-A8K4-01 2 190584433 190584433 C T ANKAR Missense_Mutation p.S787F 0.21 tolerated(0.24) benign(0.058) TCGA-WE-A8K4-01 2 196673501 196673501 C T DNAH7 Missense_Mutation p.E3330K 0.23 deleterious(0) probably_damaging(0.936) TCGA-WE-A8K4-01 2 196759799 196759799 C T DNAH7 Missense_Mutation p.M1599I 0.25 tolerated(0.2) benign(0.05) TCGA-WE-A8K4-01 2 198953776 198953776 T A PLCL1 Silent p.A970A 0.18 TCGA-WE-A8K4-01 2 202137403 202137403 C T CASP8 Silent p.L211L 0.26 TCGA-WE-A8K4-01 2 202712170 202712170 C T CDK15 Silent p.I306I 0.24 TCGA-WE-A8K4-01 2 207170001 207170001 C T ZDBF2 Missense_Mutation p.S250L 0.20 tolerated(0.17) benign(0) TCGA-WE-A8K4-01 2 209358267 209358267 G A PTH2R Silent p.E512E 0.19 TCGA-WE-A8K4-01 2 212251643 212251643 C T ERBB4 Missense_Mutation p.R1139Q 0.27 tolerated(0.25) possibly_damaging(0.459) TCGA-WE-A8K4-01 2 212251820 212251820 G A ERBB4 Missense_Mutation p.P1080L 0.24 tolerated(0.29) benign(0.001) TCGA-WE-A8K4-01 2 21241930 21241930 T C APOB Missense_Mutation p.T1019A 0.36 possibly_damaging(0.592) TCGA-WE-A8K4-01 2 21245801 21245801 G A APOB Silent p.F906F 0.30 TCGA-WE-A8K4-01 2 218678520 218678520 G A TNS1 Silent p.D1479D 0.27 TCGA-WE-A8K4-01 2 218712963 218712963 G A TNS1 Silent p.V634V 0.42 TCGA-WE-A8K4-01 2 219104186 219104186 C T ARPC2 Silent p.V176V 0.29 TCGA-WE-A8K4-01 2 219423299 219423299 G A USP37 Silent p.S26S 0.22 TCGA-WE-A8K4-01 2 219423300 219423300 G A USP37 Missense_Mutation p.S26F 0.22 tolerated(0.7) possibly_damaging(0.571) TCGA-WE-A8K4-01 2 220288509 220288509 C T DES Missense_Mutation p.P419S 0.16 deleterious(0.05) benign(0.411) TCGA-WE-A8K4-01 2 220332085 220332085 G A SPEG Missense_Mutation p.C1024Y 0.17 probably_damaging(0.994) TCGA-WE-A8K4-01 2 223574520 223574520 C A MOGAT1 Missense_Mutation p.Q307K 0.23 tolerated(0.16) benign(0.094) TCGA-WE-A8K4-01 2 227898157 227898157 C A COL4A4 Missense_Mutation p.L1182F 0.36 unknown(0) TCGA-WE-A8K4-01 2 228207481 228207481 C T MFF Missense_Mutation p.A180V 0.25 tolerated(0.36) benign(0.015) TCGA-WE-A8K4-01 2 228884238 228884238 C T SPHKAP Nonsense_Mutation p.W444* 0.19 TCGA-WE-A8K4-01 2 229890621 229890621 G A PID1 Silent p.T158T 0.21 TCGA-WE-A8K4-01 2 230223254 230223254 G A DNER 3'UTR 0.20 TCGA-WE-A8K4-01 2 234959646 234959646 C T SPP2 Silent p.S39S 0.25 TCGA-WE-A8K4-01 2 239306150 239306150 C T TRAF3IP1 Silent p.S580S 0.32 TCGA-WE-A8K4-01 2 242814769 242814769 G T CXXC11 Silent p.S354S 0.17 TCGA-WE-A8K4-01 2 24536326 24536326 T C ITSN2 Intron 0.46 TCGA-WE-A8K4-01 2 24896319 24896319 C T NCOA1 Missense_Mutation p.P114L 0.31 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 2 26696120 26696120 G A OTOF Missense_Mutation p.R1205C 0.19 tolerated(0.12) probably_damaging(1) TCGA-WE-A8K4-01 2 27327190 27327190 G A CGREF1 Silent p.P15P 0.12 TCGA-WE-A8K4-01 2 27375614 27375614 C T TCF23 Missense_Mutation p.S175F 0.21 deleterious(0.04) benign(0.027) TCGA-WE-A8K4-01 2 27830790 27830790 C T ZNF512 Nonsense_Mutation p.Q339* 0.26 TCGA-WE-A8K4-01 2 29274937 29274937 C T FAM179A Missense_Mutation p.S1013L 0.24 tolerated_low_confidence(0.13) benign(0.004) TCGA-WE-A8K4-01 2 29497978 29497978 G A ALK Silent p.I676I 0.23 TCGA-WE-A8K4-01 2 29541177 29541177 G A ALK Missense_Mutation p.P547L 0.31 deleterious(0.01) probably_damaging(0.957) TCGA-WE-A8K4-01 2 30954233 30954233 C T CAPN13 Missense_Mutation p.G654R 0.20 deleterious(0.03) benign(0.259) TCGA-WE-A8K4-01 2 31562418 31562418 G A XDH Silent p.P1237P 0.28 TCGA-WE-A8K4-01 2 32716596 32716596 C T BIRC6 Missense_Mutation p.P2771S 0.30 benign(0.003) TCGA-WE-A8K4-01 2 37496830 37496830 C T PRKD3 Missense_Mutation p.D569N 0.28 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K4-01 2 38178574 38178574 C T RMDN2 Silent p.F72F 0.26 TCGA-WE-A8K4-01 2 39285925 39285925 G A SOS1 Silent p.F78F 0.15 TCGA-WE-A8K4-01 2 40657018 40657025 AAACTGTT - SLC8A1 Frame_Shift_Del p.E132Dfs*2 0.19 TCGA-WE-A8K4-01 2 47221609 47221609 C T TTC7A Silent p.F319F 0.20 TCGA-WE-A8K4-01 2 54880853 54880853 C T SPTBN1 Silent p.S1895S 0.30 TCGA-WE-A8K4-01 2 60688755 60688755 G A BCL11A Missense_Mutation p.S431L 0.22 deleterious(0.02) benign(0.32) TCGA-WE-A8K4-01 2 63822583 63822583 C T MDH1 Silent p.I61I 0.11 TCGA-WE-A8K4-01 2 67626352 67626352 C T ETAA1 Missense_Mutation p.S92F 0.17 deleterious(0) possibly_damaging(0.451) TCGA-WE-A8K4-01 2 71360531 71360531 C T MPHOSPH10 Missense_Mutation p.S198F 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 2 73519162 73519162 C T EGR4 Missense_Mutation p.G398E 0.44 tolerated(0.08) probably_damaging(0.984) TCGA-WE-A8K4-01 2 73717505 73717505 C T ALMS1 Nonsense_Mutation p.Q2806* 0.23 TCGA-WE-A8K4-01 2 74129593 74129593 C T ACTG2 Missense_Mutation p.T78I 0.34 deleterious_low_confidence(0.01) benign(0.089) TCGA-WE-A8K4-01 2 74480241 74480241 C T SLC4A5 Silent p.V376V 0.24 TCGA-WE-A8K4-01 2 74718708 74718708 C T TTC31 Missense_Mutation p.P262L 0.27 tolerated(0.05) benign(0.01) TCGA-WE-A8K4-01 2 77746674 77746674 C T LRRTM4 Silent p.G107G 0.19 TCGA-WE-A8K4-01 2 79363141 79363141 G A REG1P RNA 0.24 TCGA-WE-A8K4-01 2 80101261 80101261 G T CTNNA2 Missense_Mutation p.K215N 0.17 deleterious(0.04) benign(0.081) TCGA-WE-A8K4-01 2 86444146 86444146 T C REEP1 3'UTR 0.14 TCGA-WE-A8K4-01 2 88423911 88423911 G A FABP1 Intron 0.38 TCGA-WE-A8K4-01 2 89513351 89513351 C T IGKV1-27 Missense_Mutation p.G11E 0.21 tolerated(0.07) benign(0.331) TCGA-WE-A8K4-01 2 96458192 96458192 G A AC008268.2 RNA 0.20 TCGA-WE-A8K4-01 2 98920165 98920165 G A VWA3B Missense_Mutation p.E1141K 0.13 deleterious(0.01) benign(0.168) TCGA-WE-A8K4-01 3 101083737 101083737 C T SENP7 Missense_Mutation p.E473K 0.13 tolerated(0.14) benign(0.015) TCGA-WE-A8K4-01 3 108074187 108074187 C T HHLA2 Missense_Mutation p.S215L 0.26 tolerated(0.08) benign(0.101) TCGA-WE-A8K4-01 3 11059579 11059579 C T SLC6A1 Missense_Mutation p.L97F 0.13 deleterious(0) possibly_damaging(0.9) TCGA-WE-A8K4-01 3 111604066 111604066 G A PHLDB2 Missense_Mutation p.R381K 0.27 tolerated(0.07) benign(0.349) TCGA-WE-A8K4-01 3 112998740 112998740 G A BOC Missense_Mutation p.R697Q 0.25 tolerated(0.08) benign(0.005) TCGA-WE-A8K4-01 3 112998741 112998741 G A BOC Silent p.R697R 0.25 TCGA-WE-A8K4-01 3 113330962 113330962 G A SIDT1 Nonsense_Mutation p.W629* 0.17 TCGA-WE-A8K4-01 3 113330963 113330963 G A SIDT1 Missense_Mutation p.V630I 0.17 tolerated(1) benign(0.008) TCGA-WE-A8K4-01 3 113373827 113373827 G A KIAA2018 Silent p.S2234S 0.16 TCGA-WE-A8K4-01 3 121100355 121100355 G A STXBP5L Missense_Mutation p.E879K 0.24 tolerated(0.09) possibly_damaging(0.528) TCGA-WE-A8K4-01 3 121647358 121647358 A T SLC15A2 Missense_Mutation p.N433Y 0.26 tolerated(0.2) benign(0.005) TCGA-WE-A8K4-01 3 122002608 122002608 A T CASR Missense_Mutation p.I613F 0.40 deleterious(0) possibly_damaging(0.811) TCGA-WE-A8K4-01 3 122002610 122002610 C T CASR Silent p.I613I 0.40 TCGA-WE-A8K4-01 3 122289316 122289316 C T DTX3L Silent p.N650N 0.21 TCGA-WE-A8K4-01 3 123665833 123665833 C T CCDC14 Missense_Mutation p.E347K 0.26 deleterious(0.04) benign(0.054) TCGA-WE-A8K4-01 3 124174193 124174193 G A KALRN Missense_Mutation p.G1239E 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-WE-A8K4-01 3 130159441 130159441 G A COL6A5 Missense_Mutation p.A2087T 0.43 tolerated(0.11) possibly_damaging(0.881) TCGA-WE-A8K4-01 3 133473407 133473407 C T TF Nonsense_Mutation p.R132* 0.18 TCGA-WE-A8K4-01 3 138724465 138724465 A T PRR23A Missense_Mutation p.F216I 0.20 tolerated(0.37) possibly_damaging(0.777) TCGA-WE-A8K4-01 3 140997283 140997283 C T ACPL2 Missense_Mutation p.P60L 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K4-01 3 141644419 141644419 C T ATP1B3 Missense_Mutation p.P239L 0.29 tolerated(0.21) benign(0.049) TCGA-WE-A8K4-01 3 148459021 148459021 C T AGTR1 Missense_Mutation p.L67F 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-WE-A8K4-01 3 148459022 148459022 T A AGTR1 Missense_Mutation p.L67H 0.28 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 3 14941930 14941930 C T FGD5 Missense_Mutation p.P1059S 0.35 deleterious(0) possibly_damaging(0.623) TCGA-WE-A8K4-01 3 154898298 154898298 A G MME 3'UTR 0.27 TCGA-WE-A8K4-01 3 164756875 164756875 A G SI Silent p.D764D 0.24 TCGA-WE-A8K4-01 3 167090725 167090725 A T ZBBX 5'UTR 0.23 TCGA-WE-A8K4-01 3 17051316 17051316 C T PLCL2 Missense_Mutation p.H34Y 0.17 tolerated(0.07) benign(0.37) TCGA-WE-A8K4-01 3 17109489 17109489 G A PLCL2 Missense_Mutation p.E920K 0.30 deleterious(0.04) possibly_damaging(0.806) TCGA-WE-A8K4-01 3 175184961 175184961 G A NAALADL2 Missense_Mutation p.E508K 0.14 tolerated(0.06) possibly_damaging(0.724) TCGA-WE-A8K4-01 3 178560704 178560704 G A KCNMB2 Silent p.R229R 0.18 TCGA-WE-A8K4-01 3 179298443 179298443 T A ACTL6A Missense_Mutation p.F262I 0.15 tolerated(0.05) probably_damaging(0.924) TCGA-WE-A8K4-01 3 182554178 182554178 T C ATP11B Silent p.L158L 0.29 TCGA-WE-A8K4-01 3 184010079 184010079 C T ECE2 3'UTR 0.36 TCGA-WE-A8K4-01 3 185775259 185775259 G A ETV5 Missense_Mutation p.P331L 0.25 tolerated(0.58) benign(0.185) TCGA-WE-A8K4-01 3 195063230 195063230 G A ACAP2 Silent p.F166F 0.20 TCGA-WE-A8K4-01 3 195778737 195778737 G A TFRC 3'UTR 0.30 TCGA-WE-A8K4-01 3 25638155 25638155 G A RARB 3'UTR 0.12 TCGA-WE-A8K4-01 3 27173475 27173475 G A NEK10 Missense_Mutation p.P1050S 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 3 27332108 27332108 C T NEK10 Silent p.Q581Q 0.22 TCGA-WE-A8K4-01 3 3078996 3078996 G A CNTN4 Silent p.R692R 0.19 TCGA-WE-A8K4-01 3 38812843 38812843 C T SCN10A Missense_Mutation p.G176R 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 3 40231785 40231785 A G MYRIP Missense_Mutation p.N499S 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-WE-A8K4-01 3 40457342 40457342 G A ENTPD3 Nonsense_Mutation p.W203* 0.24 TCGA-WE-A8K4-01 3 42739642 42739642 G A HHATL Missense_Mutation p.H229Y 0.20 tolerated(0.38) benign(0.019) TCGA-WE-A8K4-01 3 42740545 42740545 G A HHATL Silent p.L89L 0.33 TCGA-WE-A8K4-01 3 42798582 42798582 C T CCDC13 Missense_Mutation p.E116K 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-WE-A8K4-01 3 43122131 43122131 G A POMGNT2 Missense_Mutation p.R265W 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 3 43122279 43122279 G A POMGNT2 Silent p.L215L 0.18 TCGA-WE-A8K4-01 3 45441779 45441779 C T LARS2 Missense_Mutation p.P93S 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 3 46307442 46307442 C T CCR3 Nonsense_Mutation p.Q286* 0.27 TCGA-WE-A8K4-01 3 46399611 46399611 G A CCR2 Nonsense_Mutation p.W198* 0.24 TCGA-WE-A8K4-01 3 4709231 4709231 C T ITPR1 Silent p.P613P 0.35 TCGA-WE-A8K4-01 3 49133398 49133398 G A QARS 3'UTR 0.27 TCGA-WE-A8K4-01 3 49201503 49201503 G A CCDC71 Nonsense_Mutation p.Q47* 0.32 TCGA-WE-A8K4-01 3 49400040 49400040 C T RHOA Nonsense_Mutation p.W99* 0.18 TCGA-WE-A8K4-01 3 49693865 49693865 G A BSN Silent p.G2292G 0.22 TCGA-WE-A8K4-01 3 49897628 49897628 C T CAMKV Silent p.K306K 0.14 TCGA-WE-A8K4-01 3 50289963 50289963 C A GNAI2 Missense_Mutation p.S99Y 0.18 deleterious(0.04) benign(0.119) TCGA-WE-A8K4-01 3 50312854 50312854 G A LSMEM2 5'Flank 0.40 TCGA-WE-A8K4-01 3 51395400 51395400 C T DOCK3 Silent p.V1592V 0.28 TCGA-WE-A8K4-01 3 51696705 51696705 C T RAD54L2 Nonsense_Mutation p.R1225* 0.22 TCGA-WE-A8K4-01 3 52394046 52394046 C T DNAH1 Nonsense_Mutation p.Q1508* 0.21 TCGA-WE-A8K4-01 3 52551036 52551036 C T STAB1 Missense_Mutation p.S1467F 0.17 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 3 52637690 52637690 G A PBRM1 Missense_Mutation p.R876C 0.29 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K4-01 3 53381598 53381598 G A DCP1A 5'UTR 0.35 TCGA-WE-A8K4-01 3 58141733 58141733 A C FLNB Missense_Mutation p.E2304D 0.32 tolerated(1) benign(0.015) TCGA-WE-A8K4-01 3 68782291 68782291 C T FAM19A4 3'UTR 0.22 TCGA-WE-A8K4-01 3 7620292 7620292 C T GRM7 Nonsense_Mutation p.Q567* 0.25 TCGA-WE-A8K4-01 3 77651596 77651596 G A ROBO2 Silent p.L1046L 0.15 TCGA-WE-A8K4-01 3 9057317 9057317 G A SRGAP3 Missense_Mutation p.P593S 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8K4-01 3 98109617 98109617 G A OR5K3 Silent p.L36L 0.25 TCGA-WE-A8K4-01 4 100062743 100062743 C T ADH4 Missense_Mutation p.A71T 0.33 deleterious(0) benign(0.162) TCGA-WE-A8K4-01 4 100260747 100260747 G A ADH1C Missense_Mutation p.R364C 0.30 possibly_damaging(0.877) TCGA-WE-A8K4-01 4 100463260 100463260 G A C4orf17 Silent p.R358R 0.29 TCGA-WE-A8K4-01 4 103585851 103585851 G A MANBA Silent p.L492L 0.19 TCGA-WE-A8K4-01 4 108816772 108816772 G A SGMS2 Silent p.T21T 0.24 TCGA-WE-A8K4-01 4 126336153 126336153 C T FAT4 Missense_Mutation p.S2012F 0.17 probably_damaging(0.942) TCGA-WE-A8K4-01 4 126370128 126370128 G A FAT4 Missense_Mutation p.E2653K 0.19 benign(0.021) TCGA-WE-A8K4-01 4 13602476 13602476 G A BOD1L1 Silent p.V2016V 0.25 TCGA-WE-A8K4-01 4 138451129 138451129 G A PCDH18 Missense_Mutation p.S705F 0.19 deleterious(0) possibly_damaging(0.89) TCGA-WE-A8K4-01 4 146601471 146601471 G A C4orf51 Missense_Mutation p.R39Q 0.26 tolerated(0.27) benign(0.216) TCGA-WE-A8K4-01 4 147741333 147741333 G A TTC29 Nonsense_Mutation p.Q349* 0.16 TCGA-WE-A8K4-01 4 166924645 166924645 G A TLL1 Silent p.V245V 0.29 TCGA-WE-A8K4-01 4 175598291 175598291 C T GLRA3 Missense_Mutation p.G289R 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 4 183609477 183609477 G A TENM3 Missense_Mutation p.G732S 0.27 deleterious(0) probably_damaging(0.986) TCGA-WE-A8K4-01 4 183609478 183609478 G A TENM3 Missense_Mutation p.G732D 0.25 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K4-01 4 183650278 183650278 C T TENM3 Silent p.F843F 0.13 TCGA-WE-A8K4-01 4 183664508 183664508 G A TENM3 Missense_Mutation p.G1189S 0.17 deleterious(0) benign(0.021) TCGA-WE-A8K4-01 4 183675643 183675643 C T TENM3 Missense_Mutation p.R1375C 0.28 deleterious(0) benign(0.136) TCGA-WE-A8K4-01 4 187074919 187074919 C T FAM149A Silent p.I69I 0.18 TCGA-WE-A8K4-01 4 187122496 187122496 G C CYP4V2 Missense_Mutation p.E329D 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-WE-A8K4-01 4 187628174 187628174 G A FAT1 Silent p.V936V 0.17 TCGA-WE-A8K4-01 4 190878601 190878601 G A FRG1 Missense_Mutation p.E161K 0.11 tolerated(0.21) benign(0.133) TCGA-WE-A8K4-01 4 20570485 20570485 C T SLIT2 Intron 0.14 TCGA-WE-A8K4-01 4 20598174 20598174 G A SLIT2 Missense_Mutation p.G1153R 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 4 21305521 21305521 C T KCNIP4 Intron 0.30 TCGA-WE-A8K4-01 4 23826108 23826108 G A PPARGC1A Missense_Mutation p.P261S 0.24 tolerated(0.27) probably_damaging(0.999) TCGA-WE-A8K4-01 4 30725262 30725262 C T PCDH7 Missense_Mutation p.P740S 0.23 deleterious(0.03) probably_damaging(1) TCGA-WE-A8K4-01 4 3255169 3255169 C T MSANTD1 Missense_Mutation p.R186C 0.24 tolerated(0.21) benign(0.394) TCGA-WE-A8K4-01 4 36212165 36212165 G C ARAP2 Missense_Mutation p.S445C 0.17 deleterious(0.01) benign(0.353) TCGA-WE-A8K4-01 4 40763227 40763227 G A NSUN7 Missense_Mutation p.D133N 0.20 deleterious(0) probably_damaging(0.929) TCGA-WE-A8K4-01 4 40810365 40810365 C T NSUN7 Silent p.A522A 0.23 TCGA-WE-A8K4-01 4 420497 420497 G A ABCA11P RNA 0.15 TCGA-WE-A8K4-01 4 42403207 42403207 C T SHISA3 Silent p.S152S 0.17 TCGA-WE-A8K4-01 4 42424885 42424885 C T ATP8A1 Missense_Mutation p.D1082N 0.24 deleterious(0.01) probably_damaging(0.981) TCGA-WE-A8K4-01 4 46099279 46099279 G A GABRG1 Silent p.I64I 0.16 TCGA-WE-A8K4-01 4 46314549 46314549 C T GABRA2 Missense_Mutation p.R147Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8K4-01 4 47644045 47644045 T C CORIN Missense_Mutation p.N697S 0.28 tolerated(0.43) benign(0.005) TCGA-WE-A8K4-01 4 56878113 56878113 C T CEP135 Nonsense_Mutation p.R922* 0.19 TCGA-WE-A8K4-01 4 62849222 62849222 C T LPHN3 Missense_Mutation p.S978L 0.21 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K4-01 4 654300 654300 C G PDE6B Missense_Mutation p.F504L 0.26 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K4-01 4 69795746 69795746 G A UGT2A3 Nonsense_Mutation p.R457* 0.26 TCGA-WE-A8K4-01 4 70070215 70070215 A G UGT2B11 Silent p.L415L 0.09 TCGA-WE-A8K4-01 4 70080370 70080370 C T UGT2B11 Missense_Mutation p.G24E 0.21 deleterious(0.05) possibly_damaging(0.558) TCGA-WE-A8K4-01 4 70460378 70460378 C T UGT2A1 Missense_Mutation p.G540E 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 4 71275235 71275235 C T PROL1 Missense_Mutation p.P64S 0.24 tolerated_low_confidence(0.91) possibly_damaging(0.803) TCGA-WE-A8K4-01 4 72317018 72317018 G T SLC4A4 Missense_Mutation p.R441L 0.21 deleterious(0) possibly_damaging(0.635) TCGA-WE-A8K4-01 4 72317019 72317019 G A SLC4A4 Splice_Site p.X441_splice 0.21 TCGA-WE-A8K4-01 4 7725526 7725526 G A SORCS2 Missense_Mutation p.E843K 0.21 tolerated(0.9) benign(0.168) TCGA-WE-A8K4-01 4 77290668 77290668 C T CCDC158 Missense_Mutation p.E420K 0.34 deleterious(0) probably_damaging(0.979) TCGA-WE-A8K4-01 4 8009854 8009854 G A ABLIM2 Missense_Mutation p.S517F 0.32 deleterious(0) benign(0.197) TCGA-WE-A8K4-01 4 80329196 80329196 C T GK2 Silent p.V53V 0.12 TCGA-WE-A8K4-01 4 83838852 83838852 T C THAP9 Missense_Mutation p.L496S 0.25 deleterious(0.04) possibly_damaging(0.826) TCGA-WE-A8K4-01 4 88106804 88106804 C T KLHL8 Missense_Mutation p.V122I 0.18 tolerated(0.78) possibly_damaging(0.646) TCGA-WE-A8K4-01 4 88106805 88106805 C T KLHL8 Silent p.L121L 0.18 TCGA-WE-A8K4-01 4 88766723 88766723 G A MEPE Missense_Mutation p.D235N 0.25 deleterious(0.03) possibly_damaging(0.824) TCGA-WE-A8K4-01 4 88767163 88767163 G A MEPE Silent p.E381E 0.35 TCGA-WE-A8K4-01 4 9452186 9452186 C T DEFB131 Silent p.F53F 0.19 TCGA-WE-A8K4-01 4 9784732 9784732 C T DRD5 Missense_Mutation p.A360V 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 4 98480174 98480174 G A STPG2 3'UTR 0.26 TCGA-WE-A8K4-01 5 10250411 10250411 G A CCT5 5'UTR 0.34 TCGA-WE-A8K4-01 5 10430090 10430090 C T MARCH6 Silent p.S864S 0.24 TCGA-WE-A8K4-01 5 1081699 1081699 G A SLC12A7 Silent p.S430S 0.19 TCGA-WE-A8K4-01 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.22 TCGA-WE-A8K4-01 5 112214452 112214452 G A REEP5 3'UTR 0.23 TCGA-WE-A8K4-01 5 114499295 114499295 G A TRIM36 Missense_Mutation p.S73L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K4-01 5 115335551 115335551 C T AQPEP Silent p.F489F 0.27 TCGA-WE-A8K4-01 5 118533521 118533521 C T DMXL1 Nonsense_Mutation p.R2539* 0.06 TCGA-WE-A8K4-01 5 121488600 121488600 T C ZNF474 Silent p.S305S 0.15 TCGA-WE-A8K4-01 5 127627235 127627235 C T FBN2 Missense_Mutation p.G2093E 0.17 deleterious(0.04) possibly_damaging(0.817) TCGA-WE-A8K4-01 5 127627242 127627242 C T FBN2 Missense_Mutation p.D2091N 0.18 deleterious(0.03) probably_damaging(0.967) TCGA-WE-A8K4-01 5 132223570 132223570 G A AFF4 Silent p.F967F 0.19 TCGA-WE-A8K4-01 5 135389748 135389748 C T TGFBI Missense_Mutation p.P415S 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 5 13781007 13781007 C T DNAH5 Missense_Mutation p.G2961E 0.32 probably_damaging(0.982) TCGA-WE-A8K4-01 5 140201883 140201883 G A PCDHA5 Missense_Mutation p.E175K 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-WE-A8K4-01 5 140202282 140202282 G A PCDHA5 Missense_Mutation p.D308N 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K4-01 5 140250345 140250345 T C PCDHA11 Missense_Mutation p.F553L 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-WE-A8K4-01 5 140431972 140431972 C T PCDHB1 Missense_Mutation p.P306L 0.31 tolerated(0.59) possibly_damaging(0.674) TCGA-WE-A8K4-01 5 140475967 140475967 C T PCDHB2 Silent p.F531F 0.26 TCGA-WE-A8K4-01 5 140476750 140476750 G A PCDHB2 Silent p.R792R 0.24 TCGA-WE-A8K4-01 5 140480212 140480212 G A PCDHB3 5'Flank 0.21 TCGA-WE-A8K4-01 5 140516853 140516853 C T PCDHB5 Silent p.L613L 0.21 TCGA-WE-A8K4-01 5 140558185 140558185 G A PCDHB8 Silent p.R190R 0.09 TCGA-WE-A8K4-01 5 140559916 140559916 C T PCDHB8 Silent p.F767F 0.22 TCGA-WE-A8K4-01 5 140563178 140563178 C T PCDHB16 Silent p.T348T 0.29 TCGA-WE-A8K4-01 5 140564340 140564340 C T PCDHB16 Silent p.L736L 0.29 TCGA-WE-A8K4-01 5 140710826 140710826 C T PCDHGA1 Missense_Mutation p.P192L 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-WE-A8K4-01 5 140719184 140719184 G A PCDHGA2 Missense_Mutation p.D216N 0.31 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-WE-A8K4-01 5 140772881 140772881 C T PCDHGA8 Silent p.L167L 0.13 TCGA-WE-A8K4-01 5 140802314 140802314 C T PCDHGA11 Missense_Mutation p.S507F 0.31 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-WE-A8K4-01 5 147449904 147449904 C T SPINK5 Nonsense_Mutation p.Q34* 0.17 TCGA-WE-A8K4-01 5 149756072 149756072 C T TCOF1 Silent p.L743L 0.25 TCGA-WE-A8K4-01 5 150664237 150664237 T A SLC36A3 Silent p.A289A 0.35 TCGA-WE-A8K4-01 5 153406880 153406880 C T FAM114A2 Silent p.A215A 0.25 TCGA-WE-A8K4-01 5 154305493 154305493 T G GEMIN5 Missense_Mutation p.N408H 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-WE-A8K4-01 5 154305494 154305494 C T GEMIN5 Nonsense_Mutation p.W407* 0.17 TCGA-WE-A8K4-01 5 154305495 154305495 C T GEMIN5 Nonsense_Mutation p.W407* 0.16 TCGA-WE-A8K4-01 5 156346503 156346503 C T TIMD4 Missense_Mutation p.G368R 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-WE-A8K4-01 5 167944978 167944978 A T RARS Missense_Mutation p.H595L 0.17 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 5 167944979 167944979 C T RARS Silent p.H595H 0.18 TCGA-WE-A8K4-01 5 168119669 168119669 G A SLIT3 Missense_Mutation p.P1040L 0.26 tolerated(0.19) possibly_damaging(0.505) TCGA-WE-A8K4-01 5 177151109 177151109 G A FAM153A 3'UTR 0.20 TCGA-WE-A8K4-01 5 178408830 178408830 G A GRM6 Missense_Mutation p.T821I 0.26 deleterious(0.04) probably_damaging(0.978) TCGA-WE-A8K4-01 5 180030184 180030184 G A FLT4 3'UTR 0.29 TCGA-WE-A8K4-01 5 180038362 180038362 G A FLT4 Missense_Mutation p.P1219S 0.22 tolerated(0.17) benign(0.005) TCGA-WE-A8K4-01 5 180377434 180377434 G A BTNL8 Missense_Mutation p.E465K 0.25 tolerated(0.83) benign(0.025) TCGA-WE-A8K4-01 5 31294193 31294193 G A CDH6 Missense_Mutation p.R118K 0.13 deleterious(0) probably_damaging(0.968) TCGA-WE-A8K4-01 5 31305298 31305298 G A CDH6 Silent p.K339K 0.22 TCGA-WE-A8K4-01 5 31526999 31526999 G A DROSHA Missense_Mutation p.P14L 0.30 tolerated_low_confidence(0.3) possibly_damaging(0.726) TCGA-WE-A8K4-01 5 31527000 31527000 G A DROSHA Missense_Mutation p.P14S 0.30 tolerated_low_confidence(1) possibly_damaging(0.641) TCGA-WE-A8K4-01 5 32235179 32235179 G A MTMR12 Silent p.P467P 0.13 TCGA-WE-A8K4-01 5 35875626 35875626 C T IL7R Silent p.I271I 0.27 TCGA-WE-A8K4-01 5 36039706 36039706 C A UGT3A2 Missense_Mutation p.M316I 0.32 tolerated(0.29) probably_damaging(0.941) TCGA-WE-A8K4-01 5 38959347 38959347 C T RICTOR Missense_Mutation p.D710N 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K4-01 5 45262838 45262838 C T HCN1 Missense_Mutation p.E620K 0.23 deleterious(0.03) probably_damaging(0.972) TCGA-WE-A8K4-01 5 45303799 45303799 G A HCN1 Missense_Mutation p.A507V 0.26 deleterious(0) benign(0.138) TCGA-WE-A8K4-01 5 49695013 49695013 C T EMB 3'UTR 0.25 TCGA-WE-A8K4-01 5 55202106 55202106 G A IL31RA Silent p.T414T 0.31 TCGA-WE-A8K4-01 5 63871693 63871693 C T RGS7BP Missense_Mutation p.S142F 0.20 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K4-01 5 68665385 68665385 G A TAF9 Intron 0.44 TCGA-WE-A8K4-01 5 75893395 75893395 G A IQGAP2 Missense_Mutation p.E347K 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-WE-A8K4-01 5 75950773 75950773 G A IQGAP2 Silent p.V755V 0.24 TCGA-WE-A8K4-01 5 76714117 76714117 C T PDE8B Missense_Mutation p.H659Y 0.23 deleterious(0) probably_damaging(0.929) TCGA-WE-A8K4-01 5 78610590 78610590 T A JMY Missense_Mutation p.S859T 0.23 tolerated(0.18) benign(0.281) TCGA-WE-A8K4-01 5 80408535 80408535 G A RASGRF2 Missense_Mutation p.E649K 0.31 deleterious(0) possibly_damaging(0.787) TCGA-WE-A8K4-01 5 82807968 82807968 G A VCAN Silent p.E265E 0.27 TCGA-WE-A8K4-01 5 82837556 82837556 G A VCAN Missense_Mutation p.E2912K 0.30 deleterious(0) benign(0.178) TCGA-WE-A8K4-01 5 89992862 89992862 T C GPR98 Missense_Mutation p.L2685S 0.28 benign(0.205) TCGA-WE-A8K4-01 6 100911219 100911219 T A SIM1 Silent p.I42I 0.33 TCGA-WE-A8K4-01 6 10529873 10529873 C A GCNT2 Nonsense_Mutation p.Y243* 0.20 TCGA-WE-A8K4-01 6 107531649 107531649 G A PDSS2 Silent p.I334I 0.31 TCGA-WE-A8K4-01 6 109995410 109995410 G A AK9 Missense_Mutation p.R58C 0.24 tolerated(0.2) benign(0.009) TCGA-WE-A8K4-01 6 129371060 129371060 C T LAMA2 Intron 0.22 TCGA-WE-A8K4-01 6 138644877 138644877 A C KIAA1244 Missense_Mutation p.Q1612H 0.30 tolerated(0.32) benign(0.018) TCGA-WE-A8K4-01 6 143092893 143092893 G A HIVEP2 Missense_Mutation p.P995S 0.36 tolerated(0.53) benign(0.002) TCGA-WE-A8K4-01 6 146865059 146865059 G A RAB32 Missense_Mutation p.A18T 0.12 tolerated(0.25) unknown(0) TCGA-WE-A8K4-01 6 160666500 160666500 C T SLC22A2 Silent p.R345R 0.20 TCGA-WE-A8K4-01 6 28121639 28121639 C T ZKSCAN8 Silent p.F527F 0.35 TCGA-WE-A8K4-01 6 28269471 28269471 C A PGBD1 Missense_Mutation p.L614I 0.27 tolerated(0.14) probably_damaging(0.998) TCGA-WE-A8K4-01 6 28540956 28540956 C T SCAND3 Missense_Mutation p.D904N 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-WE-A8K4-01 6 30303673 30303673 G A TRIM39 Missense_Mutation p.G234E 0.21 tolerated(0.17) benign(0.206) TCGA-WE-A8K4-01 6 31747558 31747558 G A VARS Nonsense_Mutation p.Q1039* 0.26 TCGA-WE-A8K4-01 6 31846779 31846779 G A SLC44A4 5'Flank 0.19 TCGA-WE-A8K4-01 6 31905203 31905203 G A CFB Missense_Mutation p.E213K 0.20 tolerated(0.45) benign(0.256) TCGA-WE-A8K4-01 6 32411075 32411075 C T HLA-DRA Nonsense_Mutation p.R148* 0.24 TCGA-WE-A8K4-01 6 33131436 33131436 G A COL11A2 3'UTR 0.20 TCGA-WE-A8K4-01 6 35543600 35543600 C T FKBP5 3'UTR 0.20 TCGA-WE-A8K4-01 6 37186316 37186316 G A TMEM217 Missense_Mutation p.S164F 0.22 tolerated(0.5) benign(0.109) TCGA-WE-A8K4-01 6 37429408 37429408 C T CMTR1 Silent p.S393S 0.30 TCGA-WE-A8K4-01 6 41118050 41118050 C T TREML1 Silent p.G190G 0.21 TCGA-WE-A8K4-01 6 4122224 4122224 G A C6orf201 Missense_Mutation p.R109K 0.31 tolerated(1) benign(0.001) TCGA-WE-A8K4-01 6 42823607 42823607 C T GLTSCR1L Missense_Mutation p.S687L 0.21 tolerated(0.35) benign(0.001) TCGA-WE-A8K4-01 6 42980175 42980175 G A MEA1 3'UTR 0.19 TCGA-WE-A8K4-01 6 43227320 43227320 C T TTBK1 Missense_Mutation p.P434S 0.28 possibly_damaging(0.721) TCGA-WE-A8K4-01 6 55198740 55198740 C T GFRAL Missense_Mutation p.S105L 0.20 deleterious(0.02) benign(0.058) TCGA-WE-A8K4-01 6 55639031 55639031 G A BMP5 Silent p.I281I 0.11 TCGA-WE-A8K4-01 6 55932127 55932127 C T COL21A1 Missense_Mutation p.G698E 0.14 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 6 56481912 56481912 C T DST Intron 0.18 TCGA-WE-A8K4-01 6 6197507 6197507 C T F13A1 Missense_Mutation p.G389R 0.20 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 6 71004057 71004057 G A COL9A1 Missense_Mutation p.S170L 0.34 unknown(0) TCGA-WE-A8K4-01 6 7374172 7374172 C T CAGE1 Missense_Mutation p.E294K 0.17 deleterious(0.02) benign(0.081) TCGA-WE-A8K4-01 6 84234354 84234354 G A PRSS35 Silent p.Q398Q 0.35 TCGA-WE-A8K4-01 6 87725467 87725467 G A HTR1E Missense_Mutation p.A139T 0.20 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K4-01 7 100389683 100389683 A G ZAN Missense_Mutation p.N2541S 0.19 unknown(0) TCGA-WE-A8K4-01 7 103244918 103244918 G A RELN Silent p.T1007T 0.23 TCGA-WE-A8K4-01 7 107115720 107115720 G A GPR22 Nonsense_Mutation p.W405* 0.29 TCGA-WE-A8K4-01 7 10978444 10978444 G A NDUFA4 Missense_Mutation p.P41L 0.24 deleterious(0.05) possibly_damaging(0.521) TCGA-WE-A8K4-01 7 113520063 113520063 G A PPP1R3A Missense_Mutation p.H362Y 0.29 tolerated(1) benign(0.006) TCGA-WE-A8K4-01 7 11446009 11446009 C T THSD7A Silent p.E1385E 0.24 TCGA-WE-A8K4-01 7 117175303 117175303 G A CFTR Missense_Mutation p.G194E 0.25 deleterious(0.04) possibly_damaging(0.887) TCGA-WE-A8K4-01 7 120884361 120884361 C T CPED1 Missense_Mutation p.P760L 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-WE-A8K4-01 7 128475593 128475593 A G FLNC Missense_Mutation p.K189R 0.18 tolerated(0.64) probably_damaging(0.998) TCGA-WE-A8K4-01 7 138596029 138596029 G A KIAA1549 Missense_Mutation p.S1003F 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 7 141794657 141794657 G A MGAM Silent p.G1588G 0.30 TCGA-WE-A8K4-01 7 141796191 141796191 C T MGAM Silent p.F1660F 0.17 TCGA-WE-A8K4-01 7 142104372 142104372 G A TRBV6-9 Silent p.I31I 0.25 TCGA-WE-A8K4-01 7 143140875 143140875 C T TAS2R60 Silent p.S110S 0.22 TCGA-WE-A8K4-01 7 143657720 143657720 C T OR2F1 Silent p.I219I 0.17 TCGA-WE-A8K4-01 7 143701142 143701142 C T OR6B1 Missense_Mutation p.P18L 0.22 deleterious(0) probably_damaging(0.972) TCGA-WE-A8K4-01 7 143747725 143747725 C T OR2A5 Silent p.V77V 0.25 TCGA-WE-A8K4-01 7 144060321 144060321 G A ARHGEF5 Missense_Mutation p.E187K 0.18 tolerated(0.32) benign(0.001) TCGA-WE-A8K4-01 7 144097342 144097342 C T NOBOX Missense_Mutation p.R303Q 0.30 tolerated(0.12) possibly_damaging(0.577) TCGA-WE-A8K4-01 7 148978828 148978828 G A ZNF783 Silent p.R345R 0.40 TCGA-WE-A8K4-01 7 150094410 150094410 T - ZNF775 Frame_Shift_Del p.F281Sfs*16 0.24 TCGA-WE-A8K4-01 7 157985097 157985097 G A PTPRN2 Silent p.F157F 0.15 TCGA-WE-A8K4-01 7 18688132 18688132 G A HDAC9 Silent p.E431E 0.15 TCGA-WE-A8K4-01 7 20668337 20668337 C T ABCB5 Silent p.I45I 0.20 TCGA-WE-A8K4-01 7 27148041 27148041 G A HOXA3 Silent p.G275G 0.19 TCGA-WE-A8K4-01 7 30491838 30491838 G C NOD1 Missense_Mutation p.R399G 0.20 deleterious(0) possibly_damaging(0.508) TCGA-WE-A8K4-01 7 31829696 31829696 T G PDE1C Intron 0.24 TCGA-WE-A8K4-01 7 33388682 33388682 C T BBS9 Silent p.V444V 0.27 TCGA-WE-A8K4-01 7 36429717 36429717 C T KIAA0895 5'UTR 0.26 TCGA-WE-A8K4-01 7 44043470 44043470 G A SPDYE1 Missense_Mutation p.R169K 0.25 tolerated(0.47) benign(0.012) TCGA-WE-A8K4-01 7 44283111 44283111 G A CAMK2B Silent p.L144L 0.30 TCGA-WE-A8K4-01 7 57529180 57529180 C G ZNF716 Missense_Mutation p.T338S 0.16 tolerated(0.27) benign(0.013) TCGA-WE-A8K4-01 7 64453406 64453406 G A ERV3-1 5'UTR 0.29 TCGA-WE-A8K4-01 7 70233010 70233010 T C AUTS2 Missense_Mutation p.F564L 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8K4-01 7 72658586 72658586 G A GTF2IRD2P1 RNA 0.29 TCGA-WE-A8K4-01 7 73008587 73008587 G A MLXIPL Intron 0.20 TCGA-WE-A8K4-01 7 73010596 73010596 T C MLXIPL Missense_Mutation p.N649D 0.21 deleterious(0.01) benign(0.15) TCGA-WE-A8K4-01 7 75192351 75192351 G A HIP1 Missense_Mutation p.A303V 0.24 deleterious(0.01) possibly_damaging(0.686) TCGA-WE-A8K4-01 7 82538283 82538283 C T PCLO Silent p.R4449R 0.29 TCGA-WE-A8K4-01 7 82595332 82595332 C T PCLO Missense_Mutation p.E1258K 0.22 unknown(0) TCGA-WE-A8K4-01 7 86493745 86493745 G A GRM3 3'UTR 0.33 TCGA-WE-A8K4-01 7 87746075 87746075 C T ADAM22 Missense_Mutation p.H185Y 0.23 deleterious(0) possibly_damaging(0.516) TCGA-WE-A8K4-01 7 8790687 8790687 C T NXPH1 Missense_Mutation p.S35L 0.18 tolerated(0.34) benign(0.025) TCGA-WE-A8K4-01 7 88964016 88964016 G A ZNF804B Missense_Mutation p.E574K 0.15 tolerated(0.09) benign(0.055) TCGA-WE-A8K4-01 7 89794105 89794105 C T STEAP1 3'UTR 0.38 TCGA-WE-A8K4-01 7 90006889 90006889 C T GTPBP10 Silent p.F220F 0.28 TCGA-WE-A8K4-01 7 92761382 92761382 C T SAMD9L Silent p.R1301R 0.20 TCGA-WE-A8K4-01 7 98524804 98524804 C T TRRAP Missense_Mutation p.T997I 0.13 benign(0.028) TCGA-WE-A8K4-01 7 99312187 99312187 C T CYP3A7 Silent p.E263E 0.21 TCGA-WE-A8K4-01 8 101153523 101153523 G T FBXO43 Missense_Mutation p.P320H 0.23 deleterious(0.01) benign(0.231) TCGA-WE-A8K4-01 8 101648147 101648147 T C SNX31 Silent p.Q78Q 0.24 TCGA-WE-A8K4-01 8 102661664 102661664 G A GRHL2 Silent p.E545E 0.17 TCGA-WE-A8K4-01 8 103220423 103220423 G A RRM2B Nonsense_Mutation p.Q332* 0.26 TCGA-WE-A8K4-01 8 10470118 10470118 C T RP1L1 Missense_Mutation p.G497E 0.16 benign(0.145) TCGA-WE-A8K4-01 8 10470225 10470225 G A RP1L1 Silent p.L461L 0.31 TCGA-WE-A8K4-01 8 106813918 106813918 T C ZFPM2 Silent p.P536P 0.18 TCGA-WE-A8K4-01 8 110980389 110980389 C T KCNV1 Missense_Mutation p.M477I 0.33 tolerated(0.28) benign(0.019) TCGA-WE-A8K4-01 8 11188512 11188512 T A SLC35G5 5'UTR 0.50 TCGA-WE-A8K4-01 8 123965671 123965671 C T ZHX2 Missense_Mutation p.H641Y 0.32 tolerated(0.25) probably_damaging(0.989) TCGA-WE-A8K4-01 8 131848648 131848648 G A ADCY8 Silent p.F850F 0.13 TCGA-WE-A8K4-01 8 133925303 133925303 G A TG Missense_Mutation p.V1391M 0.19 tolerated(0.08) benign(0.104) TCGA-WE-A8K4-01 8 139165247 139165247 G A FAM135B Missense_Mutation p.H491Y 0.20 tolerated(0.48) benign(0.002) TCGA-WE-A8K4-01 8 13947879 13947879 G A SGCZ 3'UTR 0.17 TCGA-WE-A8K4-01 8 14412386 14412386 C T SGCZ Missense_Mutation p.R30K 0.15 tolerated(0.09) benign(0.225) TCGA-WE-A8K4-01 8 144557611 144557611 G A ZC3H3 Silent p.S620S 0.29 TCGA-WE-A8K4-01 8 145661673 145661673 G A TONSL Missense_Mutation p.H715Y 0.30 tolerated(0.19) benign(0.034) TCGA-WE-A8K4-01 8 145698027 145698027 C T KIFC2 Missense_Mutation p.S600L 0.16 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 8 22974611 22974611 G A TNFRSF10C 3'UTR 0.31 TCGA-WE-A8K4-01 8 23290489 23290489 G A ENTPD4 Missense_Mutation p.L601F 0.25 deleterious(0.04) benign(0.128) TCGA-WE-A8K4-01 8 27516959 27516959 G A SCARA3 Silent p.L424L 0.36 TCGA-WE-A8K4-01 8 32505607 32505607 C T NRG1 Intron 0.18 TCGA-WE-A8K4-01 8 3265469 3265469 G A CSMD1 Nonsense_Mutation p.Q675* 0.22 TCGA-WE-A8K4-01 8 37555532 37555532 C T ZNF703 Silent p.F371F 0.33 TCGA-WE-A8K4-01 8 37720526 37720526 G A RAB11FIP1 Nonsense_Mutation p.Q1247* 0.21 TCGA-WE-A8K4-01 8 38839233 38839233 C T HTRA4 Missense_Mutation p.P354L 0.31 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 8 38948864 38948864 T C ADAM9 Missense_Mutation p.V766A 0.21 tolerated(0.89) benign(0) TCGA-WE-A8K4-01 8 39604027 39604027 C T ADAM2 Missense_Mutation p.R713K 0.21 tolerated(0.22) benign(0.098) TCGA-WE-A8K4-01 8 39776398 39776398 T G IDO1 Missense_Mutation p.I123S 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8K4-01 8 48697753 48697753 G A PRKDC Silent p.P3675P 0.26 TCGA-WE-A8K4-01 8 53586439 53586439 G A RB1CC1 Missense_Mutation p.S323F 0.17 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 8 55541144 55541144 G A RP1 Missense_Mutation p.E1568K 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-WE-A8K4-01 8 57079087 57079087 G A PLAG1 Silent p.S406S 0.20 TCGA-WE-A8K4-01 8 57079088 57079088 G A PLAG1 Missense_Mutation p.S406F 0.20 tolerated(0.11) benign(0.135) TCGA-WE-A8K4-01 8 57353822 57353822 G A PENK 3'UTR 0.19 TCGA-WE-A8K4-01 8 67504744 67504744 C A MYBL1 Missense_Mutation p.K266N 0.21 deleterious(0) probably_damaging(0.948) TCGA-WE-A8K4-01 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.24 deleterious(0.01) benign(0.024) TCGA-WE-A8K4-01 8 70744220 70744220 G A SLCO5A1 Missense_Mutation p.S230L 0.17 deleterious(0) probably_damaging(0.963) TCGA-WE-A8K4-01 8 73848865 73848865 G A KCNB2 Silent p.K425K 0.16 TCGA-WE-A8K4-01 8 76456189 76456189 C T HNF4G Missense_Mutation p.R78C 0.28 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 8 92052935 92052935 C T TMEM55A Missense_Mutation p.A15T 0.19 tolerated(0.5) benign(0.169) TCGA-WE-A8K4-01 8 95862207 95862207 C T INTS8 Silent p.F465F 0.27 TCGA-WE-A8K4-01 9 113496648 113496648 G A MUSK Missense_Mutation p.G249E 0.33 tolerated(0.07) probably_damaging(1) TCGA-WE-A8K4-01 9 115806321 115806321 G A ZFP37 Missense_Mutation p.H193Y 0.25 tolerated(0.74) benign(0.107) TCGA-WE-A8K4-01 9 116856248 116856248 C T KIF12 Missense_Mutation p.E302K 0.38 deleterious(0.01) possibly_damaging(0.721) TCGA-WE-A8K4-01 9 120476488 120476488 G A TLR4 Silent p.K694K 0.37 TCGA-WE-A8K4-01 9 121929864 121929864 C T BRINP1 Missense_Mutation p.S595N 0.32 tolerated(0.11) benign(0.051) TCGA-WE-A8K4-01 9 125054115 125054115 C T MRRF Missense_Mutation p.P183S 0.40 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 9 125551833 125551833 G A OR5C1 Missense_Mutation p.G208S 0.26 tolerated(0.13) probably_damaging(1) TCGA-WE-A8K4-01 9 131670170 131670170 C G LRRC8A Missense_Mutation p.L243V 0.39 deleterious(0) benign(0.243) TCGA-WE-A8K4-01 9 136629219 136629219 G A VAV2 Missense_Mutation p.P868S 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 9 139694879 139694879 G T CCDC183 Missense_Mutation p.M159I 0.48 tolerated(0.12) benign(0.104) TCGA-WE-A8K4-01 9 140139111 140139111 C T FAM166A Missense_Mutation p.E244K 0.22 deleterious(0.02) possibly_damaging(0.719) TCGA-WE-A8K4-01 9 16436817 16436817 G A BNC2 Missense_Mutation p.H459Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 9 21140978 21140978 C T IFNW1 3'UTR 0.28 TCGA-WE-A8K4-01 9 21409572 21409572 C T IFNA8 Missense_Mutation p.P133S 0.26 tolerated(0.26) benign(0.09) TCGA-WE-A8K4-01 9 27949259 27949259 G A LINGO2 Missense_Mutation p.R471C 0.24 deleterious(0) possibly_damaging(0.861) TCGA-WE-A8K4-01 9 32631914 32631914 C T TAF1L Missense_Mutation p.E1222K 0.32 tolerated(0.24) benign(0.017) TCGA-WE-A8K4-01 9 4286103 4286103 C T GLIS3 Missense_Mutation p.G108E 0.41 tolerated(0.41) possibly_damaging(0.666) TCGA-WE-A8K4-01 9 71840230 71840230 C T TJP2 Silent p.L352L 0.58 TCGA-WE-A8K4-01 9 78601083 78601083 G A PCSK5 Silent p.R111R 0.44 TCGA-WE-A8K4-01 9 78682918 78682918 C T PCSK5 Missense_Mutation p.S227L 0.32 deleterious(0) probably_damaging(0.968) TCGA-WE-A8K4-01 9 79324360 79324360 A G PRUNE2 Missense_Mutation p.Y944H 0.37 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 9 79324361 79324361 A G PRUNE2 Silent p.S943S 0.35 TCGA-WE-A8K4-01 9 8341723 8341723 C T PTPRD Silent p.E1639E 0.28 TCGA-WE-A8K4-01 9 88651301 88651301 G A GOLM1 Missense_Mutation p.S240F 0.34 tolerated(0.07) benign(0.278) TCGA-WE-A8K4-01 9 90501030 90501030 G A SPATA31E1 Missense_Mutation p.R543K 0.26 tolerated(0.16) benign(0.439) TCGA-WE-A8K4-01 9 90501031 90501031 G A SPATA31E1 Silent p.R543R 0.26 TCGA-WE-A8K4-01 X 101572285 101572285 G A NXF2 Intron 0.20 TCGA-WE-A8K4-01 X 105450024 105450024 C T MUM1L1 Missense_Mutation p.S200L 0.56 tolerated(0.06) benign(0.014) TCGA-WE-A8K4-01 X 110644416 110644416 C T DCX Silent p.Q250Q 0.56 TCGA-WE-A8K4-01 X 111195553 111195553 C T TRPC5 Silent p.E32E 0.46 TCGA-WE-A8K4-01 X 113965884 113965884 C T HTR2C Missense_Mutation p.L73F 0.52 deleterious(0) probably_damaging(1) TCGA-WE-A8K4-01 X 130407790 130407790 C T IGSF1 Missense_Mutation p.E1336K 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-WE-A8K4-01 X 13337655 13337655 C T ATXN3L Silent p.L133L 0.48 TCGA-WE-A8K4-01 X 140985028 140985028 C T MAGEC3 Missense_Mutation p.P495L 0.43 tolerated(0.07) possibly_damaging(0.627) TCGA-WE-A8K4-01 X 142596831 142596831 G A SPANXN3 Missense_Mutation p.P80L 0.46 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K4-01 X 142795386 142795386 C T SPANXN2 Missense_Mutation p.E98K 0.45 tolerated(0.24) unknown(0) TCGA-WE-A8K4-01 X 150912346 150912346 T C CNGA2 Silent p.D457D 0.45 TCGA-WE-A8K4-01 X 151092998 151092998 C T MAGEA4 Silent p.L288L 0.41 TCGA-WE-A8K4-01 X 151283605 151283605 C T RP11-1007I13.4 RNA 0.53 TCGA-WE-A8K4-01 X 151997732 151997732 C T CETN2 Missense_Mutation p.M84I 0.46 tolerated(1) benign(0) TCGA-WE-A8K4-01 X 153186187 153186187 C T ARHGAP4 Missense_Mutation p.E192K 0.43 deleterious(0.01) probably_damaging(0.965) TCGA-WE-A8K4-01 X 22291600 22291600 C T ZNF645 Silent p.I164I 0.41 TCGA-WE-A8K4-01 X 2861192 2861192 A T ARSE Missense_Mutation p.L347H 0.50 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K4-01 X 30577978 30577978 C T CXorf21 Missense_Mutation p.M165I 0.45 tolerated(0.22) benign(0.005) TCGA-WE-A8K4-01 X 3235774 3235774 G A MXRA5 Missense_Mutation p.S1983F 0.62 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K4-01 X 44703625 44703625 G A DUSP21 Missense_Mutation p.D83N 0.57 tolerated(0.27) benign(0.011) TCGA-WE-A8K4-01 X 46857529 46857529 G A JADE3 Missense_Mutation p.R45Q 0.39 deleterious(0.01) possibly_damaging(0.833) TCGA-WE-A8K4-01 X 46857530 46857530 G A JADE3 Silent p.R45R 0.40 TCGA-WE-A8K4-01 X 47272013 47272013 C T ZNF157 Silent p.L181L 0.50 TCGA-WE-A8K4-01 X 55042138 55042138 G A ALAS2 Silent p.S347S 0.48 TCGA-WE-A8K4-01 X 69670570 69670570 A C DLG3 Missense_Mutation p.K308Q 0.42 tolerated(0.06) benign(0.003) TCGA-WE-A8K4-01 X 73961236 73961236 G A KIAA2022 Silent p.L1052L 0.50 TCGA-WE-A8K4-01 X 84559371 84559371 G A POF1B Missense_Mutation p.S515F 0.62 deleterious(0) possibly_damaging(0.724) TCGA-WE-A8K4-01 Y 16952878 16952878 C T NLGN4Y Silent p.I729I 0.44 TCGA-WE-A8K5-06 10 102257542 102257542 G A SEC31B Silent p.A624A 0.70 TCGA-WE-A8K5-06 10 102566206 102566206 C T PAX2 Silent p.V235V 0.70 TCGA-WE-A8K5-06 10 104163090 104163090 C T PSD Missense_Mutation p.G981E 0.67 tolerated(0.58) benign(0.221) TCGA-WE-A8K5-06 10 104175821 104175821 C G PSD Missense_Mutation p.R237T 0.44 deleterious(0) possibly_damaging(0.702) TCGA-WE-A8K5-06 10 104352475 104352475 C T SUFU Silent p.F197F 0.57 TCGA-WE-A8K5-06 10 117704400 117704400 C T ATRNL1 3'UTR 0.50 TCGA-WE-A8K5-06 10 118314942 118314942 C T PNLIP Missense_Mutation p.P245L 0.74 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 10 123845345 123845345 C T TACC2 Silent p.S1110S 0.77 TCGA-WE-A8K5-06 10 123847385 123847385 G A TACC2 Silent p.G1790G 0.74 TCGA-WE-A8K5-06 10 127456152 127456152 C T MMP21 Silent p.T453T 0.76 TCGA-WE-A8K5-06 10 135233559 135233559 C T MTG1 Missense_Mutation p.P299S 0.58 tolerated(1) benign(0.001) TCGA-WE-A8K5-06 10 14816584 14816584 G A FAM107B Silent p.L27L 0.49 TCGA-WE-A8K5-06 10 17165679 17165679 T G CUBN Missense_Mutation p.K133Q 0.55 tolerated(0.3) benign(0.101) TCGA-WE-A8K5-06 10 17271885 17271885 G A VIM Missense_Mutation p.R155Q 0.14 deleterious(0.01) possibly_damaging(0.889) TCGA-WE-A8K5-06 10 17271886 17271886 G A VIM Silent p.R155R 0.14 TCGA-WE-A8K5-06 10 17277874 17277874 C T VIM Missense_Mutation p.S420F 0.31 tolerated(0.11) possibly_damaging(0.58) TCGA-WE-A8K5-06 10 26310615 26310615 G A MYO3A Intron 0.38 TCGA-WE-A8K5-06 10 26491933 26491933 G A MYO3A Missense_Mutation p.E1543K 0.45 tolerated_low_confidence(0.3) benign(0.027) TCGA-WE-A8K5-06 10 26559583 26559583 C T GAD2 Silent p.F330F 0.38 TCGA-WE-A8K5-06 10 30611364 30611364 G A MTPAP Missense_Mutation p.S392L 0.43 deleterious(0) possibly_damaging(0.806) TCGA-WE-A8K5-06 10 30747148 30747148 C T MAP3K8 Missense_Mutation p.P337S 0.35 tolerated(0.11) probably_damaging(1) TCGA-WE-A8K5-06 10 31810787 31810787 G A ZEB1 Missense_Mutation p.A843T 0.51 tolerated(0.28) benign(0.05) TCGA-WE-A8K5-06 10 43597915 43597915 C T RET Missense_Mutation p.P155S 0.56 deleterious(0.03) probably_damaging(0.996) TCGA-WE-A8K5-06 10 43623752 43623752 G A RET 3'UTR 0.62 TCGA-WE-A8K5-06 10 45499485 45499485 C T ZNF22 Silent p.L223L 0.62 TCGA-WE-A8K5-06 10 45602471 45602471 C T RSU1P2 RNA 0.80 TCGA-WE-A8K5-06 10 47088005 47088005 C T NPY4R 3'UTR 0.45 TCGA-WE-A8K5-06 10 48426657 48426657 G A GDF10 Silent p.S450S 0.58 TCGA-WE-A8K5-06 10 50684317 50684317 A C ERCC6 Missense_Mutation p.Y776D 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 10 50902578 50902578 C T C10orf53 Intron 0.65 TCGA-WE-A8K5-06 10 55973744 55973744 C T PCDH15 Silent p.L350L 0.69 TCGA-WE-A8K5-06 10 61413615 61413615 G A SLC16A9 Missense_Mutation p.P390L 0.75 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K5-06 10 61830172 61830172 C G ANK3 Missense_Mutation p.K3489N 0.65 benign(0.025) TCGA-WE-A8K5-06 10 64148224 64148224 C T ZNF365 Silent p.L271L 0.65 TCGA-WE-A8K5-06 10 70332631 70332631 C T TET1 Missense_Mutation p.S179F 0.60 deleterious(0.01) possibly_damaging(0.56) TCGA-WE-A8K5-06 10 70404693 70404693 C T TET1 Missense_Mutation p.S736L 0.77 tolerated(0.85) benign(0.003) TCGA-WE-A8K5-06 10 89720798 89720799 - TACT PTEN Frame_Shift_Ins p.L320Yfs*6 0.60 TCGA-WE-A8K5-06 10 96466660 96466660 C T CYP2C18 Silent p.S254S 0.79 TCGA-WE-A8K5-06 10 96495040 96495040 G A CYP2C18 Missense_Mutation p.E438K 0.71 deleterious(0.01) probably_damaging(0.949) TCGA-WE-A8K5-06 10 96707649 96707649 G A CYP2C9 Missense_Mutation p.E199K 0.65 tolerated(0.63) benign(0.004) TCGA-WE-A8K5-06 11 1010582 1010582 C T AP2A2 Missense_Mutation p.A926V 0.56 tolerated(0.2) benign(0.006) TCGA-WE-A8K5-06 11 101375168 101375168 C T TRPC6 Missense_Mutation p.E178K 0.24 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 11 103908204 103908204 C T DDI1 Silent p.I218I 0.18 TCGA-WE-A8K5-06 11 106558233 106558233 G A GUCY1A2 3'UTR 0.10 TCGA-WE-A8K5-06 11 108044413 108044413 G A NPAT Missense_Mutation p.P433L 0.51 tolerated(0.15) benign(0.003) TCGA-WE-A8K5-06 11 1087993 1087993 C T MUC2 Silent p.S1156S 0.46 TCGA-WE-A8K5-06 11 1101587 1101587 C T MUC2 Missense_Mutation p.P2534S 0.43 unknown(0) TCGA-WE-A8K5-06 11 113140974 113140974 C T NCAM1 Silent p.F781F 0.27 TCGA-WE-A8K5-06 11 113270347 113270347 C T ANKK1 Silent p.V552V 0.45 TCGA-WE-A8K5-06 11 113639648 113639648 G A ZW10 Silent p.F49F 0.18 TCGA-WE-A8K5-06 11 113686045 113686045 G A USP28 Missense_Mutation p.S508F 0.26 deleterious(0.05) benign(0.258) TCGA-WE-A8K5-06 11 113802505 113802505 G A HTR3B Nonsense_Mutation p.W95* 0.29 TCGA-WE-A8K5-06 11 114569216 114569216 C T NXPE2 Silent p.I194I 0.54 TCGA-WE-A8K5-06 11 117774793 117774793 C T TMPRSS13 Missense_Mutation p.E469K 0.43 deleterious(0.01) possibly_damaging(0.782) TCGA-WE-A8K5-06 11 118074365 118074365 G A AMICA1 Missense_Mutation p.R184C 0.34 tolerated(0.16) benign(0.04) TCGA-WE-A8K5-06 11 118210511 118210511 C T CD3D Missense_Mutation p.E129K 0.49 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 11 119216561 119216561 G A MFRP Missense_Mutation p.P117S 0.57 tolerated(0.34) benign(0.001) TCGA-WE-A8K5-06 11 119996532 119996532 C T TRIM29 Silent p.L400L 0.47 TCGA-WE-A8K5-06 11 121476118 121476118 G A SORL1 Missense_Mutation p.G1596R 0.56 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K5-06 11 122724656 122724656 C T CRTAM Missense_Mutation p.P118S 0.23 deleterious(0) probably_damaging(0.985) TCGA-WE-A8K5-06 11 123994480 123994480 G A VWA5A Missense_Mutation p.R378K 0.35 tolerated(0.97) benign(0.002) TCGA-WE-A8K5-06 11 124134742 124134742 G A OR8G5 Missense_Mutation p.G7E 0.50 tolerated_low_confidence(0.34) benign(0.018) TCGA-WE-A8K5-06 11 124252879 124252879 C T OR8B2 Missense_Mutation p.D121N 0.56 deleterious_low_confidence(0) benign(0.025) TCGA-WE-A8K5-06 11 124267110 124267110 G A OR8B3 Silent p.I46I 0.18 TCGA-WE-A8K5-06 11 125647285 125647285 C T PATE2 Missense_Mutation p.G112R 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 11 1268520 1268520 C T MUC5B Silent p.A3470A 0.39 TCGA-WE-A8K5-06 11 1271141 1271141 C T MUC5B Missense_Mutation p.P4344L 0.45 benign(0.003) TCGA-WE-A8K5-06 11 128709614 128709614 G A KCNJ1 Silent p.F194F 0.15 TCGA-WE-A8K5-06 11 129752373 129752373 G A NFRKB Missense_Mutation p.P377L 0.49 deleterious(0.01) unknown(0) TCGA-WE-A8K5-06 11 131240681 131240681 A T NTM 5'UTR 0.17 TCGA-WE-A8K5-06 11 132016230 132016230 C T NTM Silent p.I74I 0.53 TCGA-WE-A8K5-06 11 18655938 18655938 C T SPTY2D1 5'UTR 0.70 TCGA-WE-A8K5-06 11 22396423 22396423 G A SLC17A6 Missense_Mutation p.M388I 0.23 tolerated(0.09) benign(0.009) TCGA-WE-A8K5-06 11 24759826 24759826 A G LUZP2 Missense_Mutation p.K104R 0.44 tolerated(0.11) benign(0.01) TCGA-WE-A8K5-06 11 30033842 30033842 C T KCNA4 Silent p.E128E 0.32 TCGA-WE-A8K5-06 11 3050587 3050587 G A CARS Silent p.S296S 0.15 TCGA-WE-A8K5-06 11 30926640 30926640 C T DCDC1 Missense_Mutation p.M1392I 0.26 tolerated(0.2) benign(0) TCGA-WE-A8K5-06 11 32954402 32954402 C T QSER1 Missense_Mutation p.S404L 0.53 deleterious(0.05) benign(0.008) TCGA-WE-A8K5-06 11 4388870 4388870 G A OR52B4 Missense_Mutation p.S219F 0.61 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 11 4389036 4389036 G A OR52B4 Missense_Mutation p.L164F 0.57 deleterious(0) probably_damaging(0.988) TCGA-WE-A8K5-06 11 4470796 4470796 C T OR52K2 Missense_Mutation p.S76F 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 11 45924232 45924232 G A MAPK8IP1 Missense_Mutation p.S305N 0.45 tolerated(1) benign(0.001) TCGA-WE-A8K5-06 11 45925664 45925664 C T MAPK8IP1 Missense_Mutation p.P540S 0.39 deleterious(0) probably_damaging(0.981) TCGA-WE-A8K5-06 11 4621823 4621823 G A TRIM68 Missense_Mutation p.R381W 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 11 46407846 46407846 G A CHRM4 Missense_Mutation p.L88F 0.29 deleterious(0) probably_damaging(0.942) TCGA-WE-A8K5-06 11 47494704 47494704 G A CELF1 Silent p.P449P 0.49 TCGA-WE-A8K5-06 11 48267211 48267211 C T OR4X2 Missense_Mutation p.L186F 0.27 tolerated(0.17) benign(0.12) TCGA-WE-A8K5-06 11 4843176 4843176 C T OR51F2 Silent p.V187V 0.24 TCGA-WE-A8K5-06 11 4903783 4903783 C T OR51T1 Silent p.F245F 0.36 TCGA-WE-A8K5-06 11 4936151 4936151 G A OR51G2 Missense_Mutation p.S248F 0.16 deleterious(0) probably_damaging(0.962) TCGA-WE-A8K5-06 11 4936713 4936713 G A OR51G2 Missense_Mutation p.H61Y 0.15 deleterious(0) possibly_damaging(0.635) TCGA-WE-A8K5-06 11 49597696 49597696 G A RP11-707M1.1 RNA 0.67 TCGA-WE-A8K5-06 11 49598144 49598144 C T RP11-707M1.1 RNA 0.14 TCGA-WE-A8K5-06 11 5274599 5274599 G A HBG2 Missense_Mutation p.H118Y 0.17 tolerated(0.1) benign(0.007) TCGA-WE-A8K5-06 11 5275625 5275625 G A HBG2 Missense_Mutation p.S71F 0.14 deleterious(0.04) probably_damaging(0.987) TCGA-WE-A8K5-06 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.24 tolerated(0.65) benign(0.008) TCGA-WE-A8K5-06 11 5373225 5373225 G A OR51B6 Nonsense_Mutation p.W163* 0.44 TCGA-WE-A8K5-06 11 5411481 5411481 C T OR51M1 Missense_Mutation p.H285Y 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-WE-A8K5-06 11 55062991 55062991 C T TRIM51HP RNA 0.54 TCGA-WE-A8K5-06 11 55135686 55135686 G A OR4A15 Missense_Mutation p.M109I 0.47 tolerated_low_confidence(0.05) benign(0.043) TCGA-WE-A8K5-06 11 55322479 55322479 G A OR4C15 Missense_Mutation p.D233N 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8K5-06 11 55322769 55322769 C T OR4C15 Silent p.I329I 0.46 TCGA-WE-A8K5-06 11 55406269 55406269 T C OR4P4 Missense_Mutation p.C146R 0.64 deleterious(0) probably_damaging(0.936) TCGA-WE-A8K5-06 11 55540996 55540996 C T OR5D13 Missense_Mutation p.P28L 0.45 tolerated(0.09) benign(0.109) TCGA-WE-A8K5-06 11 55587192 55587192 C T OR5D18 Silent p.F29F 0.58 TCGA-WE-A8K5-06 11 55889898 55889898 G A OR8H3 Missense_Mutation p.G17E 0.48 deleterious(0) possibly_damaging(0.799) TCGA-WE-A8K5-06 11 56058075 56058075 G A OR8H1 Missense_Mutation p.S155F 0.57 deleterious(0.01) benign(0.443) TCGA-WE-A8K5-06 11 56128610 56128610 G A OR8J1 Silent p.K296K 0.39 TCGA-WE-A8K5-06 11 5624936 5624936 C T TRIM6 Missense_Mutation p.L160F 0.49 tolerated(0.05) possibly_damaging(0.897) TCGA-WE-A8K5-06 11 56757274 56757274 G A OR5AK2 Missense_Mutation p.E296K 0.44 deleterious(0) benign(0.027) TCGA-WE-A8K5-06 11 57004022 57004022 G A APLNR Missense_Mutation p.L153F 0.48 deleterious(0.01) probably_damaging(0.979) TCGA-WE-A8K5-06 11 57319727 57319727 G A UBE2L6 3'UTR 0.60 TCGA-WE-A8K5-06 11 57322070 57322070 G A UBE2L6 Silent p.A50A 0.20 TCGA-WE-A8K5-06 11 57983175 57983175 G A OR1S1 Missense_Mutation p.R320K 0.45 tolerated(0.32) benign(0.001) TCGA-WE-A8K5-06 11 58207171 58207171 G A OR5B12 Silent p.L152L 0.45 TCGA-WE-A8K5-06 11 5841994 5841994 C T OR52N2 Silent p.I143I 0.47 TCGA-WE-A8K5-06 11 59271861 59271861 C T OR4D11 Silent p.I271I 0.25 TCGA-WE-A8K5-06 11 59834513 59834513 C T MS4A3 Silent p.I147I 0.34 TCGA-WE-A8K5-06 11 60271189 60271189 G A MS4A12 Missense_Mutation p.G163R 0.09 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 11 60703415 60703415 G A TMEM132A Missense_Mutation p.G704E 0.37 deleterious(0.03) possibly_damaging(0.697) TCGA-WE-A8K5-06 11 6129257 6129257 C T OR56B4 Silent p.I83I 0.50 TCGA-WE-A8K5-06 11 62490360 62490360 G A HNRNPUL2 Missense_Mutation p.P303S 0.44 tolerated(0.25) benign(0.036) TCGA-WE-A8K5-06 11 63078489 63078489 C T SLC22A10 Missense_Mutation p.L537F 0.13 tolerated(0.56) benign(0.004) TCGA-WE-A8K5-06 11 63177385 63177385 C T SLC22A9 3'UTR 0.55 TCGA-WE-A8K5-06 11 65365974 65365974 G A MAP3K11 Missense_Mutation p.P778S 0.27 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-WE-A8K5-06 11 65374165 65374165 G A MAP3K11 Nonsense_Mutation p.Q534* 0.21 TCGA-WE-A8K5-06 11 65374191 65374191 G A MAP3K11 Missense_Mutation p.P525L 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8K5-06 11 66082760 66082760 G A CD248 Missense_Mutation p.T580I 0.45 tolerated(0.06) benign(0.276) TCGA-WE-A8K5-06 11 66358012 66358012 C T CCDC87 Silent p.R825R 0.45 TCGA-WE-A8K5-06 11 66816067 66816067 C T SYT12 Missense_Mutation p.R369C 0.37 deleterious(0) probably_damaging(0.973) TCGA-WE-A8K5-06 11 67208449 67208449 G A CORO1B Intron 0.75 TCGA-WE-A8K5-06 11 68458411 68458411 G A GAL Missense_Mutation p.D110N 0.16 tolerated(0.66) benign(0.096) TCGA-WE-A8K5-06 11 6977128 6977128 A G ZNF215 Missense_Mutation p.K307R 0.43 tolerated(0.15) benign(0.255) TCGA-WE-A8K5-06 11 70319483 70319483 G A SHANK2 Missense_Mutation p.R1682C 0.20 deleterious(0.01) possibly_damaging(0.689) TCGA-WE-A8K5-06 11 70332902 70332902 G A SHANK2 Missense_Mutation p.P1167S 0.34 tolerated(0.21) benign(0.022) TCGA-WE-A8K5-06 11 70333314 70333314 G A SHANK2 Silent p.S1029S 0.51 TCGA-WE-A8K5-06 11 76901882 76901882 C T MYO7A Silent p.F1297F 0.31 TCGA-WE-A8K5-06 11 7982069 7982069 G A NLRP10 Silent p.L364L 0.22 TCGA-WE-A8K5-06 11 8161582 8161582 G A RIC3 Silent p.L95L 0.30 TCGA-WE-A8K5-06 11 85436502 85436502 T A SYTL2 Missense_Mutation p.Q333L 0.58 deleterious(0) benign(0.009) TCGA-WE-A8K5-06 11 86157481 86157481 C T ME3 Missense_Mutation p.E477K 0.53 tolerated(0.81) benign(0.01) TCGA-WE-A8K5-06 11 89891338 89891338 A G NAALAD2 Silent p.E274E 0.41 TCGA-WE-A8K5-06 11 9191453 9191453 G A DENND5A Missense_Mutation p.R701W 0.44 tolerated(0.06) probably_damaging(0.987) TCGA-WE-A8K5-06 11 92088352 92088352 C T FAT3 Missense_Mutation p.S1025F 0.36 probably_damaging(0.974) TCGA-WE-A8K5-06 11 92258076 92258076 G A FAT3 Missense_Mutation p.G1190E 0.29 probably_damaging(1) TCGA-WE-A8K5-06 11 92616245 92616245 C T FAT3 Missense_Mutation p.P4208L 0.20 benign(0) TCGA-WE-A8K5-06 11 99690287 99690287 C T CNTN5 Missense_Mutation p.S23F 0.11 deleterious_low_confidence(0) benign(0.024) TCGA-WE-A8K5-06 11 99690388 99690388 C T CNTN5 Missense_Mutation p.P57S 0.10 tolerated_low_confidence(0.79) benign(0.002) TCGA-WE-A8K5-06 12 101480467 101480467 G A ANO4 Silent p.G487G 0.32 TCGA-WE-A8K5-06 12 101603504 101603504 G A SLC5A8 Silent p.T41T 0.41 TCGA-WE-A8K5-06 12 10275904 10275904 G A CLEC7A Missense_Mutation p.S184F 0.52 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 12 103246708 103246708 G A PAH Nonsense_Mutation p.R243* 0.45 TCGA-WE-A8K5-06 12 103352448 103352448 G A ASCL1 Silent p.R142R 0.33 TCGA-WE-A8K5-06 12 103981321 103981321 G A STAB2 Missense_Mutation p.E23K 0.40 tolerated(0.23) benign(0.023) TCGA-WE-A8K5-06 12 10560183 10560183 G A KLRC4 3'UTR 0.33 TCGA-WE-A8K5-06 12 107080794 107080794 C T RFX4 Silent p.P179P 0.30 TCGA-WE-A8K5-06 12 107080795 107080795 C T RFX4 Missense_Mutation p.R180W 0.29 tolerated(0.1) probably_damaging(0.989) TCGA-WE-A8K5-06 12 11035249 11035249 G A PRH1 Missense_Mutation p.P50L 0.18 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-WE-A8K5-06 12 11083309 11083309 C T PRH2 Missense_Mutation p.P50L 0.19 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-WE-A8K5-06 12 111758339 111758339 G A CUX2 Silent p.A842A 0.56 TCGA-WE-A8K5-06 12 111772438 111772438 C T CUX2 Silent p.I1040I 0.47 TCGA-WE-A8K5-06 12 112451150 112451150 G A ERP29 5'UTR 0.50 TCGA-WE-A8K5-06 12 112605226 112605226 G A HECTD4 Silent p.L3997L 0.32 TCGA-WE-A8K5-06 12 112708161 112708161 G A HECTD4 Missense_Mutation p.P538L 0.36 possibly_damaging(0.884) TCGA-WE-A8K5-06 12 113307558 113307558 C T RPH3A Intron 0.39 TCGA-WE-A8K5-06 12 113617022 113617022 G A DDX54 Nonsense_Mutation p.Q164* 0.36 TCGA-WE-A8K5-06 12 113810543 113810543 C T PLBD2 Silent p.F158F 0.35 TCGA-WE-A8K5-06 12 117672446 117672446 G A NOS1 Silent p.I1087I 0.34 TCGA-WE-A8K5-06 12 117909097 117909097 C T KSR2 Missense_Mutation p.E871K 0.39 deleterious(0.01) benign(0.346) TCGA-WE-A8K5-06 12 12044004 12044004 G A ETV6 3'UTR 0.39 TCGA-WE-A8K5-06 12 122687891 122687891 G A LRRC43 Missense_Mutation p.E625K 0.39 tolerated(0.07) benign(0.162) TCGA-WE-A8K5-06 12 122716937 122716937 G A VPS33A Silent p.F549F 0.38 TCGA-WE-A8K5-06 12 123345551 123345551 C T HIP1R Missense_Mutation p.S952F 0.23 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 12 123795629 123795629 G A SBNO1 Missense_Mutation p.R1090C 0.42 deleterious(0.02) possibly_damaging(0.86) TCGA-WE-A8K5-06 12 125609361 125609361 G A AACS Intron 0.45 TCGA-WE-A8K5-06 12 126004114 126004114 C T TMEM132B Silent p.V407V 0.40 TCGA-WE-A8K5-06 12 129559022 129559022 C T TMEM132D Missense_Mutation p.E900K 0.36 tolerated(0.74) benign(0.032) TCGA-WE-A8K5-06 12 131487329 131487329 C T GPR133 Intron 0.42 TCGA-WE-A8K5-06 12 132502220 132502220 C T EP400 Missense_Mutation p.P1355L 0.35 unknown(0) TCGA-WE-A8K5-06 12 133197900 133197900 G A P2RX2 Missense_Mutation p.G322E 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 12 133360780 133360780 G A GOLGA3 Silent p.S1079S 0.45 TCGA-WE-A8K5-06 12 133727691 133727691 C T CTD-2140B24.4 Silent p.I37I 0.29 TCGA-WE-A8K5-06 12 13716691 13716691 C T GRIN2B Missense_Mutation p.D1161N 0.29 tolerated(1) benign(0.272) TCGA-WE-A8K5-06 12 14940368 14940368 G A WBP11 Silent p.P519P 0.38 TCGA-WE-A8K5-06 12 18854620 18854620 C T PLCZ1 Intron 0.28 TCGA-WE-A8K5-06 12 21028227 21028227 C T SLCO1B3 Silent p.F262F 0.39 TCGA-WE-A8K5-06 12 21201691 21201691 G A SLCO1B7 Missense_Mutation p.G347E 0.44 deleterious(0) probably_damaging(0.985) TCGA-WE-A8K5-06 12 21453303 21453303 C T SLCO1A2 Missense_Mutation p.E297K 0.35 tolerated(0.84) benign(0.012) TCGA-WE-A8K5-06 12 2224488 2224488 C T CACNA1C Silent p.L50L 0.36 TCGA-WE-A8K5-06 12 247911 247911 C T IQSEC3 Missense_Mutation p.P461L 0.45 tolerated(0.29) benign(0.082) TCGA-WE-A8K5-06 12 2676739 2676739 G A CACNA1C Silent p.T558T 0.33 TCGA-WE-A8K5-06 12 2705123 2705123 C T CACNA1C Missense_Mutation p.S916F 0.34 deleterious(0.03) possibly_damaging(0.704) TCGA-WE-A8K5-06 12 29485530 29485530 C G FAR2 Intron 0.36 TCGA-WE-A8K5-06 12 33532862 33532862 T C SYT10 Missense_Mutation p.T469A 0.39 tolerated(0.06) benign(0.001) TCGA-WE-A8K5-06 12 39223219 39223219 G A CPNE8 Silent p.I123I 0.33 TCGA-WE-A8K5-06 12 40114910 40114910 G A C12orf40 Missense_Mutation p.E606K 0.38 tolerated(0.18) benign(0.008) TCGA-WE-A8K5-06 12 45410386 45410386 G A DBX2 Nonsense_Mutation p.Q235* 0.62 TCGA-WE-A8K5-06 12 4554668 4554668 C T FGF6 Nonsense_Mutation p.W23* 0.39 TCGA-WE-A8K5-06 12 463283 463283 C T KDM5A Missense_Mutation p.V330M 0.44 deleterious(0) probably_damaging(0.965) TCGA-WE-A8K5-06 12 47172501 47172501 C T SLC38A4 Missense_Mutation p.G259E 0.53 tolerated(0.1) benign(0.005) TCGA-WE-A8K5-06 12 49918499 49918499 C T SPATS2 Silent p.S382S 0.38 TCGA-WE-A8K5-06 12 50156734 50156734 C T TMBIM6 3'UTR 0.49 TCGA-WE-A8K5-06 12 51584034 51584034 G A POU6F1 Missense_Mutation p.P301L 0.33 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-WE-A8K5-06 12 52093548 52093548 G A SCN8A Missense_Mutation p.D301N 0.59 tolerated(0.46) benign(0.052) TCGA-WE-A8K5-06 12 52201072 52201072 A T SCN8A Missense_Mutation p.K1934N 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-WE-A8K5-06 12 52501931 52501931 G A AC078864.1 3'Flank 0.58 TCGA-WE-A8K5-06 12 52776809 52776809 C T KRT84 Missense_Mutation p.E266K 0.42 deleterious(0.01) possibly_damaging(0.887) TCGA-WE-A8K5-06 12 52824409 52824409 A G KRT75 Silent p.D317D 0.42 TCGA-WE-A8K5-06 12 52946654 52946654 C T KRT71 Missense_Mutation p.G70R 0.42 deleterious(0.03) probably_damaging(1) TCGA-WE-A8K5-06 12 53038971 53038971 G A KRT2 Silent p.I584I 0.32 TCGA-WE-A8K5-06 12 53162376 53162376 C T KRT76 3'UTR 0.31 TCGA-WE-A8K5-06 12 54793543 54793543 C T ITGA5 Splice_Site p.X910_splice 0.34 TCGA-WE-A8K5-06 12 55252069 55252069 C T MUCL1 3'UTR 0.37 TCGA-WE-A8K5-06 12 55357641 55357641 C T TESPA1 Silent p.R180R 0.34 TCGA-WE-A8K5-06 12 55846737 55846737 C T OR6C2 Missense_Mutation p.S247F 0.42 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-WE-A8K5-06 12 57109765 57109765 G A NACA Missense_Mutation p.S697F 0.36 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-WE-A8K5-06 12 6125773 6125773 G A VWF Silent p.T1740T 0.54 TCGA-WE-A8K5-06 12 64890184 64890187 TAAG - TBK1 Splice_Site p.X587_splice 0.31 TCGA-WE-A8K5-06 12 6618900 6618900 C T NCAPD2 Nonsense_Mutation p.R49* 0.38 TCGA-WE-A8K5-06 12 67072764 67072764 C T GRIP1 5'Flank 0.37 TCGA-WE-A8K5-06 12 67699220 67699220 C T CAND1 Missense_Mutation p.S591F 0.38 tolerated(0.12) possibly_damaging(0.472) TCGA-WE-A8K5-06 12 68642506 68642506 C T IL22 3'UTR 0.43 TCGA-WE-A8K5-06 12 6879565 6879565 C T PTMS Missense_Mutation p.A89V 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-WE-A8K5-06 12 70004040 70004040 C T LRRC10 Silent p.E193E 0.50 TCGA-WE-A8K5-06 12 70928686 70928686 C T PTPRB Missense_Mutation p.G2044E 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 12 70934658 70934658 C T PTPRB Silent p.L1858L 0.31 TCGA-WE-A8K5-06 12 7172455 7172455 C T C1S Missense_Mutation p.P190L 0.35 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 12 72955945 72955945 G A TRHDE Missense_Mutation p.D552N 0.30 tolerated(0.17) benign(0.1) TCGA-WE-A8K5-06 12 73015437 73015437 G A TRHDE Missense_Mutation p.E816K 0.43 tolerated(0.11) possibly_damaging(0.908) TCGA-WE-A8K5-06 12 75441985 75441985 G A KCNC2 Silent p.F576F 0.45 TCGA-WE-A8K5-06 12 76443435 76443435 C A NAP1L1 Intron 0.41 TCGA-WE-A8K5-06 12 7848318 7848318 G A GDF3 Missense_Mutation p.R3C 0.39 deleterious_low_confidence(0.01) benign(0.183) TCGA-WE-A8K5-06 12 7882130 7882130 C T CLEC4C 3'UTR 0.41 TCGA-WE-A8K5-06 12 81242078 81242078 C T LIN7A Silent p.T75T 0.39 TCGA-WE-A8K5-06 12 88379651 88379651 C T C12orf50 Missense_Mutation p.E368K 0.40 tolerated(0.11) possibly_damaging(0.628) TCGA-WE-A8K5-06 12 96379924 96379924 G A HAL Nonsense_Mutation p.R356* 0.35 TCGA-WE-A8K5-06 12 99119283 99119283 C T APAF1 Silent p.L1141L 0.46 TCGA-WE-A8K5-06 13 100635089 100635089 C G ZIC2 Missense_Mutation p.I257M 0.16 deleterious(0.05) probably_damaging(0.998) TCGA-WE-A8K5-06 13 100807232 100807232 G A PCCA Splice_Site p.X101_splice 0.30 TCGA-WE-A8K5-06 13 101797248 101797248 C G NALCN Splice_Site p.X614_splice 0.37 TCGA-WE-A8K5-06 13 101833668 101833668 G A NALCN Intron 0.46 TCGA-WE-A8K5-06 13 108862427 108862427 G A LIG4 Missense_Mutation p.P397L 0.48 tolerated(0.17) benign(0.009) TCGA-WE-A8K5-06 13 113047357 113047357 C T SPACA7 Silent p.F39F 0.36 TCGA-WE-A8K5-06 13 113088818 113088818 G A SPACA7 Silent p.E181E 0.50 TCGA-WE-A8K5-06 13 113803495 113803495 C T F10 Silent p.L377L 0.41 TCGA-WE-A8K5-06 13 20717131 20717131 G A GJA3 Silent p.I99I 0.47 TCGA-WE-A8K5-06 13 25367312 25367312 A G RNF17 Silent p.E356E 0.46 TCGA-WE-A8K5-06 13 25425706 25425706 G A RNF17 Missense_Mutation p.R1106K 0.34 tolerated(0.3) benign(0.001) TCGA-WE-A8K5-06 13 27216480 27216480 G A WASF3 Missense_Mutation p.E25K 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8K5-06 13 29287578 29287578 C T SLC46A3 Missense_Mutation p.R100Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 13 29599475 29599475 G A MTUS2 Missense_Mutation p.E224K 0.44 deleterious(0.01) benign(0.067) TCGA-WE-A8K5-06 13 29898790 29898790 A G MTUS2 Silent p.K959K 0.31 TCGA-WE-A8K5-06 13 31233466 31233466 C T USPL1 Silent p.F1084F 0.51 TCGA-WE-A8K5-06 13 31338421 31338421 C T ALOX5AP 3'UTR 0.50 TCGA-WE-A8K5-06 13 35517099 35517099 G A NBEA Missense_Mutation p.A48T 0.39 tolerated_low_confidence(0.06) benign(0) TCGA-WE-A8K5-06 13 38357417 38357417 G A TRPC4 Silent p.I18I 0.29 TCGA-WE-A8K5-06 13 61141686 61141686 C G TDRD3 Missense_Mutation p.L716V 0.39 deleterious(0) benign(0.237) TCGA-WE-A8K5-06 13 92380794 92380794 G A GPC5 Silent p.R343R 0.37 TCGA-WE-A8K5-06 13 96547478 96547478 C A UGGT2 Missense_Mutation p.E905D 0.40 tolerated(0.31) benign(0.01) TCGA-WE-A8K5-06 13 98828241 98828241 C T RNF113B 3'UTR 0.38 TCGA-WE-A8K5-06 14 100158130 100158130 G A CYP46A1 Missense_Mutation p.G72R 0.44 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 14 100367341 100367341 G A EML1 Missense_Mutation p.D344N 0.49 deleterious(0) possibly_damaging(0.864) TCGA-WE-A8K5-06 14 101498369 101498369 G A MIR543 RNA 0.35 TCGA-WE-A8K5-06 14 102552634 102552634 G A HSP90AA1 Nonsense_Mutation p.Q150* 0.38 TCGA-WE-A8K5-06 14 103404731 103404731 G A CDC42BPB Silent p.S1615S 0.35 TCGA-WE-A8K5-06 14 105175708 105175708 C T INF2 Silent p.P680P 0.42 TCGA-WE-A8K5-06 14 105410175 105410175 G A AHNAK2 Silent p.L3871L 0.34 TCGA-WE-A8K5-06 14 106209382 106209382 G A IGHG1 Silent p.F9F 0.41 TCGA-WE-A8K5-06 14 106236259 106236259 C T IGHG3 Missense_Mutation p.M182I 0.46 tolerated(0.14) benign(0.244) TCGA-WE-A8K5-06 14 107218703 107218703 C T IGHV3-74 Silent p.E108E 0.42 TCGA-WE-A8K5-06 14 19553719 19553719 G C POTEG Missense_Mutation p.W101C 0.03 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-WE-A8K5-06 14 20019918 20019918 C G POTEM Missense_Mutation p.W101C 0.12 deleterious_low_confidence(0.01) benign(0.237) TCGA-WE-A8K5-06 14 20404511 20404511 C T OR4K1 Missense_Mutation p.S229F 0.21 deleterious(0) possibly_damaging(0.781) TCGA-WE-A8K5-06 14 20586308 20586308 C T OR4K17 Missense_Mutation p.S248F 0.39 deleterious(0.01) probably_damaging(0.929) TCGA-WE-A8K5-06 14 22192155 22192155 C T TRAV3 Missense_Mutation p.S7L 0.38 tolerated(0.69) benign(0.005) TCGA-WE-A8K5-06 14 22205159 22205159 G A TRAV4 Missense_Mutation p.E75K 0.40 tolerated(0.66) benign(0.284) TCGA-WE-A8K5-06 14 22539336 22539336 C T TRAV22 Silent p.L66L 0.30 TCGA-WE-A8K5-06 14 22580982 22580982 G A TRAV25 Missense_Mutation p.G109R 0.46 deleterious(0) probably_damaging(0.991) TCGA-WE-A8K5-06 14 22616433 22616433 G A TRAV27 Silent p.G58G 0.32 TCGA-WE-A8K5-06 14 23374817 23374817 G A RBM23 Silent p.V151V 0.36 TCGA-WE-A8K5-06 14 23375519 23375519 G A RBM23 Missense_Mutation p.R96W 0.37 tolerated(0.1) benign(0) TCGA-WE-A8K5-06 14 23816858 23816858 G A SLC22A17 Silent p.L343L 0.36 TCGA-WE-A8K5-06 14 23900664 23900664 C T MYH7 Silent p.G253G 0.28 TCGA-WE-A8K5-06 14 24026002 24026002 C T THTPA Silent p.F12F 0.38 TCGA-WE-A8K5-06 14 31346778 31346778 C T COCH Missense_Mutation p.A28V 0.28 tolerated(0.75) benign(0) TCGA-WE-A8K5-06 14 34029364 34029364 G A NPAS3 Missense_Mutation p.G169E 0.33 deleterious(0) probably_damaging(0.982) TCGA-WE-A8K5-06 14 37198748 37198748 C T SLC25A21 Silent p.K98K 0.38 TCGA-WE-A8K5-06 14 38678783 38678783 C T SSTR1 Silent p.F63F 0.39 TCGA-WE-A8K5-06 14 44976126 44976126 G A FSCB Missense_Mutation p.S22L 0.32 deleterious(0.01) possibly_damaging(0.699) TCGA-WE-A8K5-06 14 58954710 58954710 C T KIAA0586 Missense_Mutation p.S1190F 0.33 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K5-06 14 59791149 59791149 A G DAAM1 Silent p.E322E 0.40 TCGA-WE-A8K5-06 14 61952223 61952223 C T PRKCH Missense_Mutation p.R428C 0.32 deleterious(0) probably_damaging(0.981) TCGA-WE-A8K5-06 14 63779831 63779831 C T GPHB5 Splice_Site 0.36 TCGA-WE-A8K5-06 14 65234552 65234552 C T SPTB Silent p.R2016R 0.32 TCGA-WE-A8K5-06 14 70634106 70634106 G A SLC8A3 Missense_Mutation p.S345F 0.35 deleterious(0.05) possibly_damaging(0.862) TCGA-WE-A8K5-06 14 71197191 71197191 C T MAP3K9 Missense_Mutation p.G1088E 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 14 71215681 71215681 C T MAP3K9 Silent p.T397T 0.44 TCGA-WE-A8K5-06 14 76965070 76965070 C T ESRRB Intron 0.53 TCGA-WE-A8K5-06 14 77492022 77492022 G A IRF2BPL Missense_Mutation p.S705F 0.44 deleterious(0) unknown(0) TCGA-WE-A8K5-06 14 77796142 77796142 G A GSTZ1 Missense_Mutation p.G156R 0.44 deleterious(0) probably_damaging(0.957) TCGA-WE-A8K5-06 14 77873140 77873140 C T NOXRED1 Silent p.G203G 0.44 TCGA-WE-A8K5-06 14 77873141 77873141 C T NOXRED1 Missense_Mutation p.G203E 0.49 tolerated(0.08) benign(0.263) TCGA-WE-A8K5-06 14 77873142 77873142 C T NOXRED1 Missense_Mutation p.G203R 0.47 deleterious(0.04) benign(0.263) TCGA-WE-A8K5-06 14 88892637 88892637 C T SPATA7 Missense_Mutation p.S145F 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-WE-A8K5-06 14 89124699 89124699 G A EML5 Missense_Mutation p.H1237Y 0.41 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 14 89629169 89629169 G A FOXN3 Silent p.S354S 0.48 TCGA-WE-A8K5-06 14 94756626 94756626 G A SERPINA10 Missense_Mutation p.P102L 0.35 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 15 20170125 20170125 G A IGHV1OR15-9 Silent p.T49T 0.32 TCGA-WE-A8K5-06 15 23932055 23932055 C T NDN Missense_Mutation p.E104K 0.38 deleterious(0.04) probably_damaging(0.99) TCGA-WE-A8K5-06 15 24921209 24921209 C T NPAP1 Silent p.F65F 0.41 TCGA-WE-A8K5-06 15 24923674 24923674 C T NPAP1 Missense_Mutation p.S887F 0.34 deleterious(0.03) possibly_damaging(0.85) TCGA-WE-A8K5-06 15 25307533 25307533 G A SNORD116-5 RNA 0.36 TCGA-WE-A8K5-06 15 25438277 25438277 C A SNORD115-11 3'Flank 0.50 TCGA-WE-A8K5-06 15 28482111 28482111 G A HERC2 Missense_Mutation p.A1334V 0.40 benign(0.275) TCGA-WE-A8K5-06 15 34105697 34105697 C T RYR3 Silent p.A3473A 0.36 TCGA-WE-A8K5-06 15 34160047 34160047 G A AVEN Missense_Mutation p.P208S 0.34 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 15 34640247 34640247 C T NUTM1 Missense_Mutation p.P32S 0.40 tolerated(0.32) benign(0.054) TCGA-WE-A8K5-06 15 38229129 38229129 G A TMCO5A Silent p.R74R 0.18 TCGA-WE-A8K5-06 15 38243312 38243312 C T TMCO5A Silent p.F248F 0.33 TCGA-WE-A8K5-06 15 40099385 40099385 G A GPR176 Silent p.L83L 0.46 TCGA-WE-A8K5-06 15 41148137 41148137 C T SPINT1 Missense_Mutation p.P405S 0.31 tolerated(0.24) benign(0.1) TCGA-WE-A8K5-06 15 41276001 41276001 G A INO80 Missense_Mutation p.S1399F 0.36 deleterious(0) benign(0.154) TCGA-WE-A8K5-06 15 42150885 42150885 G A SPTBN5 Missense_Mutation p.A2714V 0.45 benign(0.093) TCGA-WE-A8K5-06 15 42364039 42364039 G A PLA2G4D Silent p.F502F 0.36 TCGA-WE-A8K5-06 15 42503919 42503919 G A TMEM87A Missense_Mutation p.S552F 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 15 42644274 42644274 C T GANC Silent p.S894S 0.25 TCGA-WE-A8K5-06 15 45389833 45389833 G A DUOX2 Silent p.L1224L 0.33 TCGA-WE-A8K5-06 15 48500262 48500262 C T SLC12A1 Missense_Mutation p.R116C 0.40 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 15 48760290 48760290 G A FBN1 Missense_Mutation p.S1531F 0.35 possibly_damaging(0.68) TCGA-WE-A8K5-06 15 49118137 49118137 G A SHC4 3'UTR 0.32 TCGA-WE-A8K5-06 15 50535387 50535387 C T HDC Missense_Mutation p.E399K 0.38 deleterious(0) probably_damaging(0.965) TCGA-WE-A8K5-06 15 51748276 51748276 G A DMXL2 Missense_Mutation p.S2817L 0.33 tolerated(0.28) possibly_damaging(0.69) TCGA-WE-A8K5-06 15 54007430 54007430 C T WDR72 Nonsense_Mutation p.W158* 0.45 TCGA-WE-A8K5-06 15 54586116 54586116 G A UNC13C Missense_Mutation p.R1281Q 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-WE-A8K5-06 15 55783425 55783425 C T DYX1C1 Missense_Mutation p.E101K 0.42 tolerated(0.06) probably_damaging(0.926) TCGA-WE-A8K5-06 15 58430752 58430752 G A AQP9 5'UTR 0.38 TCGA-WE-A8K5-06 15 65214156 65214156 G A ANKDD1A Missense_Mutation p.G102S 0.43 deleterious(0.04) probably_damaging(0.918) TCGA-WE-A8K5-06 15 65496832 65496832 G A CILP Silent p.S231S 0.40 TCGA-WE-A8K5-06 15 71143905 71143905 G A LARP6 Intron 0.54 TCGA-WE-A8K5-06 15 71300847 71300847 G T LRRC49 Missense_Mutation p.W438C 0.29 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 15 72020948 72020948 G A THSD4 Missense_Mutation p.G473E 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 15 76018476 76018476 C T ODF3L1 Missense_Mutation p.P103S 0.32 tolerated(0.07) benign(0.13) TCGA-WE-A8K5-06 15 76018477 76018477 C T ODF3L1 Missense_Mutation p.P103L 0.32 deleterious(0) possibly_damaging(0.811) TCGA-WE-A8K5-06 15 76430187 76430187 G A C15orf27 Missense_Mutation p.A60T 0.33 deleterious_low_confidence(0) benign(0.174) TCGA-WE-A8K5-06 15 78317761 78317761 C T TBC1D2B Missense_Mutation p.G309E 0.45 tolerated(0.23) probably_damaging(0.92) TCGA-WE-A8K5-06 15 78781002 78781002 C T IREB2 Silent p.T655T 0.36 TCGA-WE-A8K5-06 15 79317813 79317813 G A RASGRF1 Missense_Mutation p.S462F 0.42 deleterious(0) possibly_damaging(0.583) TCGA-WE-A8K5-06 15 82335515 82335515 G A MEX3B Missense_Mutation p.R566C 0.32 deleterious(0) probably_damaging(0.985) TCGA-WE-A8K5-06 15 83349742 83349742 A C AP3B2 Missense_Mutation p.F206L 0.35 deleterious(0.03) possibly_damaging(0.679) TCGA-WE-A8K5-06 15 85327686 85327686 G A ZNF592 Missense_Mutation p.D594N 0.32 deleterious(0) possibly_damaging(0.507) TCGA-WE-A8K5-06 15 85343101 85343101 C T ZNF592 Missense_Mutation p.P1056S 0.45 tolerated(0.09) benign(0.132) TCGA-WE-A8K5-06 15 85400264 85400264 C T ALPK3 Silent p.F967F 0.47 TCGA-WE-A8K5-06 15 86822992 86822992 C T AGBL1 Missense_Mutation p.P687L 0.40 deleterious(0) probably_damaging(0.989) TCGA-WE-A8K5-06 15 89400375 89400375 C T ACAN Missense_Mutation p.S1520F 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-WE-A8K5-06 15 90246318 90246318 C T WDR93 Silent p.S147S 0.32 TCGA-WE-A8K5-06 15 90784918 90784918 C T GDPGP1 Missense_Mutation p.R260C 0.33 deleterious(0.05) benign(0.429) TCGA-WE-A8K5-06 15 91172761 91172761 C T CRTC3 Silent p.S421S 0.39 TCGA-WE-A8K5-06 15 94884105 94884105 C T MCTP2 Silent p.I307I 0.42 TCGA-WE-A8K5-06 16 10788631 10788631 C T TEKT5 Missense_Mutation p.E34K 0.54 tolerated(0.33) benign(0.097) TCGA-WE-A8K5-06 16 1250718 1250718 G A CACNA1H Silent p.V374V 0.56 TCGA-WE-A8K5-06 16 1264981 1264981 G C CACNA1H Missense_Mutation p.E1647Q 0.37 deleterious(0.04) probably_damaging(0.975) TCGA-WE-A8K5-06 16 1364046 1364046 C T UBE2I Silent p.A5A 0.33 TCGA-WE-A8K5-06 16 15851846 15851846 G A MYH11 Silent p.F478F 0.23 TCGA-WE-A8K5-06 16 16256882 16256882 C T ABCC6 Silent p.Q1158Q 0.40 TCGA-WE-A8K5-06 16 19047008 19047008 G A TMC7 Missense_Mutation p.G290R 0.23 deleterious(0.02) benign(0.221) TCGA-WE-A8K5-06 16 19455549 19455549 C T TMC5 Missense_Mutation p.P312L 0.46 deleterious(0.04) benign(0.009) TCGA-WE-A8K5-06 16 20344622 20344622 C T UMOD 3'UTR 0.18 TCGA-WE-A8K5-06 16 2104437 2104437 G A TSC2 Silent p.E159E 0.36 TCGA-WE-A8K5-06 16 2152596 2152596 G A PKD1 Missense_Mutation p.S2996F 0.34 possibly_damaging(0.498) TCGA-WE-A8K5-06 16 2159990 2159990 G A PKD1 Silent p.S1726S 0.61 TCGA-WE-A8K5-06 16 21716580 21716580 C T OTOA Silent p.S357S 0.59 TCGA-WE-A8K5-06 16 21721278 21721278 G A OTOA Missense_Mutation p.D392N 0.44 deleterious(0.02) probably_damaging(0.975) TCGA-WE-A8K5-06 16 21730491 21730491 G A OTOA Missense_Mutation p.R556K 0.17 tolerated(0.96) benign(0.062) TCGA-WE-A8K5-06 16 23767186 23767186 G A CHP2 Silent p.Q53Q 0.47 TCGA-WE-A8K5-06 16 24574958 24574958 C T RBBP6 Missense_Mutation p.P498L 0.26 tolerated_low_confidence(0.22) benign(0.019) TCGA-WE-A8K5-06 16 2564094 2564094 C T ATP6V0C 5'UTR 0.45 TCGA-WE-A8K5-06 16 27802760 27802760 C T GSG1L Nonsense_Mutation p.W309* 0.39 TCGA-WE-A8K5-06 16 29859275 29859275 C T MVP Missense_Mutation p.P883S 0.58 tolerated_low_confidence(0.19) benign(0.017) TCGA-WE-A8K5-06 16 29899929 29899929 C T SEZ6L2 Missense_Mutation p.G324E 0.65 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 16 30199377 30199377 G A CORO1A Missense_Mutation p.G326S 0.29 deleterious(0) possibly_damaging(0.845) TCGA-WE-A8K5-06 16 30495472 30495472 C T ITGAL Silent p.T298T 0.52 TCGA-WE-A8K5-06 16 31073452 31073452 G A ZNF668 Missense_Mutation p.S289F 0.38 deleterious(0) probably_damaging(0.984) TCGA-WE-A8K5-06 16 3254555 3254555 C T OR1F1 Silent p.F103F 0.23 TCGA-WE-A8K5-06 16 46943721 46943721 C T GPT2 Silent p.Y234Y 0.23 TCGA-WE-A8K5-06 16 48247426 48247426 C T ABCC11 Silent p.R428R 0.29 TCGA-WE-A8K5-06 16 4934096 4934096 C T PPL Silent p.K1520K 0.40 TCGA-WE-A8K5-06 16 49407898 49407898 G A C16orf78 Silent p.R16R 0.25 TCGA-WE-A8K5-06 16 49672716 49672716 G A ZNF423 Missense_Mutation p.T116M 0.32 deleterious(0) benign(0.411) TCGA-WE-A8K5-06 16 51172838 51172838 C T SALL1 Missense_Mutation p.D1099N 0.21 tolerated(0.2) benign(0.12) TCGA-WE-A8K5-06 16 51174102 51174102 C T SALL1 Silent p.G677G 0.26 TCGA-WE-A8K5-06 16 51174416 51174416 C T SALL1 Missense_Mutation p.E573K 0.36 tolerated(0.24) probably_damaging(0.926) TCGA-WE-A8K5-06 16 55732437 55732437 T A SLC6A2 Silent p.L482L 0.44 TCGA-WE-A8K5-06 16 57004969 57004969 C T CETP Silent p.F184F 0.25 TCGA-WE-A8K5-06 16 57758687 57758687 C T CCDC135 Silent p.F566F 0.35 TCGA-WE-A8K5-06 16 66997766 66997766 C T CES3 Missense_Mutation p.S163L 0.49 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 16 67688396 67688396 G A RLTPR Missense_Mutation p.R1128Q 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-WE-A8K5-06 16 67688786 67688786 G A RLTPR Missense_Mutation p.E1230K 0.30 deleterious(0) possibly_damaging(0.84) TCGA-WE-A8K5-06 16 68009717 68009717 C T DPEP3 Missense_Mutation p.G498D 0.17 deleterious_low_confidence(0.04) benign(0.085) TCGA-WE-A8K5-06 16 68108046 68108046 C T DUS2 Missense_Mutation p.S307F 0.11 tolerated(0.14) benign(0.039) TCGA-WE-A8K5-06 16 70298875 70298875 G A AARS Missense_Mutation p.S493F 0.14 deleterious(0.05) benign(0.001) TCGA-WE-A8K5-06 16 70534910 70534910 G A COG4 Silent p.S382S 0.41 TCGA-WE-A8K5-06 16 70955019 70955019 C T HYDIN Silent p.K2420K 0.21 TCGA-WE-A8K5-06 16 71408725 71408725 C T CALB2 Silent p.I83I 0.50 TCGA-WE-A8K5-06 16 71423902 71423902 G A CALB2 3'UTR 0.29 TCGA-WE-A8K5-06 16 71512843 71512843 A T ZNF19 Silent p.P33P 0.26 TCGA-WE-A8K5-06 16 72829302 72829302 C T ZFHX3 Missense_Mutation p.D2427N 0.48 benign(0.369) TCGA-WE-A8K5-06 16 7383050 7383050 G T RBFOX1 Missense_Mutation p.M16I 0.26 tolerated_low_confidence(0.49) benign(0.012) TCGA-WE-A8K5-06 16 76482688 76482688 C T CNTNAP4 Missense_Mutation p.S231F 0.77 tolerated(0.1) benign(0.17) TCGA-WE-A8K5-06 16 76569519 76569519 G A CNTNAP4 Missense_Mutation p.E872K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K5-06 16 784241 784241 G A NARFL Silent p.F227F 0.20 TCGA-WE-A8K5-06 16 81219146 81219146 C T PKD1L2 5'Flank 0.58 TCGA-WE-A8K5-06 16 81712110 81712110 A G CMIP Missense_Mutation p.N422S 0.25 tolerated_low_confidence(0.57) benign(0.039) TCGA-WE-A8K5-06 16 84188262 84188262 G A DNAAF1 Missense_Mutation p.E145K 0.25 deleterious(0) possibly_damaging(0.559) TCGA-WE-A8K5-06 16 84228771 84228771 G A ADAD2 Missense_Mutation p.G307E 0.48 deleterious(0.02) benign(0.276) TCGA-WE-A8K5-06 16 89954111 89954111 C T TCF25 Silent p.I200I 0.19 TCGA-WE-A8K5-06 16 9934861 9934861 G A GRIN2A Missense_Mutation p.L477F 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 17 10206519 10206519 C T MYH13 Silent p.E1887E 0.35 TCGA-WE-A8K5-06 17 10299735 10299735 C T MYH8 Missense_Mutation p.G1522E 0.55 tolerated(0.08) benign(0.201) TCGA-WE-A8K5-06 17 10301815 10301815 C T MYH8 Missense_Mutation p.R1375K 0.34 deleterious(0.05) possibly_damaging(0.839) TCGA-WE-A8K5-06 17 10304638 10304638 T C MYH8 Missense_Mutation p.N1021S 0.36 tolerated(0.15) benign(0.117) TCGA-WE-A8K5-06 17 10348614 10348614 C T MYH4 Missense_Mutation p.M1745I 0.34 tolerated(0.1) benign(0.021) TCGA-WE-A8K5-06 17 10406229 10406229 C T MYH1 Silent p.V979V 0.43 TCGA-WE-A8K5-06 17 10415234 10415234 G A MYH1 Silent p.I446I 0.47 TCGA-WE-A8K5-06 17 10549299 10549299 C T MYH3 Missense_Mutation p.G317R 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 17 11795169 11795169 C T DNAH9 Silent p.L3730L 0.31 TCGA-WE-A8K5-06 17 12649350 12649350 C T MYOCD Silent p.F362F 0.45 TCGA-WE-A8K5-06 17 14205254 14205254 C T HS3ST3B1 Missense_Mutation p.A140V 0.38 deleterious(0) probably_damaging(0.976) TCGA-WE-A8K5-06 17 15995277 15995277 G A NCOR1 Silent p.L972L 0.25 TCGA-WE-A8K5-06 17 19316917 19316917 G A RNF112 Missense_Mutation p.D250N 0.32 tolerated(0.08) possibly_damaging(0.848) TCGA-WE-A8K5-06 17 19618495 19618495 G A SLC47A2 Silent p.I53I 0.39 TCGA-WE-A8K5-06 17 26822751 26822751 C T SLC13A2 Missense_Mutation p.L512F 0.35 deleterious(0.01) probably_damaging(0.97) TCGA-WE-A8K5-06 17 26874436 26874436 G A UNC119 Intron 0.40 TCGA-WE-A8K5-06 17 26944236 26944236 G A KIAA0100 Intron 0.43 TCGA-WE-A8K5-06 17 29227433 29227433 C T TEFM Missense_Mutation p.E215K 0.35 tolerated(0.14) benign(0.037) TCGA-WE-A8K5-06 17 2966538 2966538 G A OR1D5 Missense_Mutation p.R122C 0.38 deleterious(0.01) benign(0.178) TCGA-WE-A8K5-06 17 3030656 3030656 C T OR1G1 Missense_Mutation p.A64T 0.28 tolerated(0.07) benign(0.142) TCGA-WE-A8K5-06 17 32684532 32684532 A G CCL13 Missense_Mutation p.S39G 0.34 tolerated(0.08) possibly_damaging(0.594) TCGA-WE-A8K5-06 17 32684540 32684540 G A CCL13 Silent p.K41K 0.35 TCGA-WE-A8K5-06 17 33681073 33681073 G A SLFN11 Missense_Mutation p.P402S 0.42 tolerated(0.62) benign(0.005) TCGA-WE-A8K5-06 17 34192350 34192350 C T C17orf66 Silent p.P63P 0.31 TCGA-WE-A8K5-06 17 38240118 38240118 C T THRA Missense_Mutation p.L85F 0.36 deleterious(0.02) probably_damaging(0.949) TCGA-WE-A8K5-06 17 38652546 38652546 G A TNS4 Silent p.T44T 0.45 TCGA-WE-A8K5-06 17 39086308 39086308 C T KRT23 Missense_Mutation p.E174K 0.38 deleterious(0.01) benign(0.094) TCGA-WE-A8K5-06 17 39118785 39118785 C T KRT39 Missense_Mutation p.E247K 0.38 deleterious(0) benign(0.24) TCGA-WE-A8K5-06 17 39537404 39537404 C T KRT34 Silent p.R206R 0.32 TCGA-WE-A8K5-06 17 40370241 40370241 G A STAT5B Missense_Mutation p.P366L 0.39 tolerated(0.1) benign(0.051) TCGA-WE-A8K5-06 17 41008455 41008455 G A AOC3 Missense_Mutation p.G727E 0.26 tolerated(0.81) benign(0.002) TCGA-WE-A8K5-06 17 4351516 4351516 G A SPNS3 Missense_Mutation p.G230R 0.42 tolerated(0.05) probably_damaging(0.994) TCGA-WE-A8K5-06 17 43923960 43923960 G A SPPL2C Missense_Mutation p.R563K 0.66 tolerated(0.6) benign(0.008) TCGA-WE-A8K5-06 17 44954034 44954034 G A WNT9B Missense_Mutation p.E342K 0.45 tolerated(0.24) probably_damaging(0.997) TCGA-WE-A8K5-06 17 4645709 4645709 G A ZMYND15 Missense_Mutation p.R356Q 0.36 tolerated(0.42) benign(0.022) TCGA-WE-A8K5-06 17 46627885 46627885 G A HOXB3 Silent p.S369S 0.24 TCGA-WE-A8K5-06 17 47246220 47246220 A G B4GALNT2 Missense_Mutation p.R485G 0.19 deleterious(0.01) benign(0.284) TCGA-WE-A8K5-06 17 48668822 48668822 G A CACNA1G Missense_Mutation p.G827E 0.58 tolerated(0.22) probably_damaging(0.968) TCGA-WE-A8K5-06 17 51902129 51902129 G A KIF2B Missense_Mutation p.D579N 0.43 tolerated(0.09) benign(0.003) TCGA-WE-A8K5-06 17 53237185 53237185 C T STXBP4 Silent p.I525I 0.44 TCGA-WE-A8K5-06 17 55027441 55027441 G A COIL Missense_Mutation p.P388S 0.44 tolerated(0.15) possibly_damaging(0.465) TCGA-WE-A8K5-06 17 56342291 56342291 C T LPO Missense_Mutation p.P492L 0.51 tolerated(0.13) probably_damaging(0.931) TCGA-WE-A8K5-06 17 57140001 57140001 C A TRIM37 Missense_Mutation p.R290L 0.43 tolerated(0.1) benign(0.398) TCGA-WE-A8K5-06 17 58259006 58259006 G A USP32 Silent p.L1409L 0.31 TCGA-WE-A8K5-06 17 59147378 59147378 G A BCAS3 Intron 0.46 TCGA-WE-A8K5-06 17 60345595 60345595 G A TBC1D3P2 RNA 0.48 TCGA-WE-A8K5-06 17 61607722 61607722 G A KCNH6 Missense_Mutation p.G165E 0.39 tolerated(0.11) benign(0.131) TCGA-WE-A8K5-06 17 61973896 61973896 G A CSH1 5'UTR 0.30 TCGA-WE-A8K5-06 17 62800990 62800990 G A PLEKHM1P RNA 0.43 TCGA-WE-A8K5-06 17 62800991 62800991 G A PLEKHM1P RNA 0.43 TCGA-WE-A8K5-06 17 6338338 6338338 G A AIPL1 Silent p.T29T 0.40 TCGA-WE-A8K5-06 17 63822522 63822522 C T CEP112 Intron 0.47 TCGA-WE-A8K5-06 17 7099547 7099547 G A DLG4 Silent p.F474F 0.22 TCGA-WE-A8K5-06 17 7133439 7133439 G A DVL2 Missense_Mutation p.P149L 0.44 tolerated(0.33) benign(0.127) TCGA-WE-A8K5-06 17 71394320 71394320 G A SDK2 Missense_Mutation p.R1070C 0.28 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 17 71429941 71429941 G A SDK2 Silent p.I414I 0.29 TCGA-WE-A8K5-06 17 72368094 72368094 C T GPR142 Silent p.I248I 0.42 TCGA-WE-A8K5-06 17 72436946 72436946 C T GPRC5C Missense_Mutation p.S389F 0.57 deleterious(0) probably_damaging(0.993) TCGA-WE-A8K5-06 17 72938111 72938111 G A OTOP3 Silent p.E202E 0.37 TCGA-WE-A8K5-06 17 73780747 73780747 G A UNK 5'Flank 0.43 TCGA-WE-A8K5-06 17 73872487 73872487 C T TRIM47 Silent p.L286L 0.49 TCGA-WE-A8K5-06 17 74474957 74474957 G A RHBDF2 Silent p.S230S 0.24 TCGA-WE-A8K5-06 17 74622453 74622453 G A ST6GALNAC1 Silent p.L445L 0.34 TCGA-WE-A8K5-06 17 76482374 76482374 C T DNAH17 Missense_Mutation p.E2331K 0.44 benign(0.237) TCGA-WE-A8K5-06 17 76492013 76492013 C T DNAH17 Missense_Mutation p.M1935I 0.33 probably_damaging(0.996) TCGA-WE-A8K5-06 17 77768291 77768291 G A CBX8 3'UTR 0.37 TCGA-WE-A8K5-06 17 78195554 78195554 G C SLC26A11 Missense_Mutation p.Q65H 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 17 78195555 78195555 G A SLC26A11 Missense_Mutation p.A66T 0.44 deleterious(0) possibly_damaging(0.714) TCGA-WE-A8K5-06 17 7833878 7833878 G A TRAPPC1 3'UTR 0.43 TCGA-WE-A8K5-06 17 79495891 79495891 G A FSCN2 Missense_Mutation p.G112R 0.50 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 17 79804374 79804374 G A P4HB Silent p.P329P 0.45 TCGA-WE-A8K5-06 17 7983826 7983826 C T AC129492.6 3'UTR 0.40 TCGA-WE-A8K5-06 17 9604442 9604442 C T USP43 Silent p.F514F 0.88 TCGA-WE-A8K5-06 17 9801281 9801281 C T RCVRN 3'UTR 0.44 TCGA-WE-A8K5-06 18 13105063 13105063 C T CEP192 Silent p.S2344S 0.40 TCGA-WE-A8K5-06 18 14850312 14850312 A C ANKRD30B Missense_Mutation p.K1046N 0.34 deleterious(0.03) possibly_damaging(0.708) TCGA-WE-A8K5-06 18 22804825 22804825 G A ZNF521 Silent p.G1019G 0.37 TCGA-WE-A8K5-06 18 23738157 23738157 T C PSMA8 Silent p.G148G 0.37 TCGA-WE-A8K5-06 18 24035797 24035797 G A KCTD1 Silent p.S228S 0.40 TCGA-WE-A8K5-06 18 24441202 24441202 G A AQP4 Nonsense_Mutation p.Q169* 0.52 TCGA-WE-A8K5-06 18 28659912 28659912 C T DSC2 Missense_Mutation p.E522K 0.38 deleterious(0.01) benign(0.327) TCGA-WE-A8K5-06 18 28659939 28659939 C T DSC2 Missense_Mutation p.D513N 0.36 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K5-06 18 28725590 28725590 G A DSC1 Missense_Mutation p.P308L 0.38 tolerated(0.56) benign(0.038) TCGA-WE-A8K5-06 18 29125766 29125766 C T DSG2 Missense_Mutation p.S806L 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 18 29339891 29339891 C T SLC25A52 Missense_Mutation p.G255E 0.35 deleterious(0.03) possibly_damaging(0.519) TCGA-WE-A8K5-06 18 42530689 42530689 C T SETBP1 Missense_Mutation p.P462S 0.38 tolerated(0.3) benign(0.001) TCGA-WE-A8K5-06 18 42531729 42531729 C T SETBP1 Silent p.L808L 0.32 TCGA-WE-A8K5-06 18 43212385 43212385 G A SLC14A2 Missense_Mutation p.E198K 0.43 tolerated(0.08) benign(0.005) TCGA-WE-A8K5-06 18 43572078 43572078 G A PSTPIP2 Missense_Mutation p.P278S 0.35 deleterious(0.01) possibly_damaging(0.703) TCGA-WE-A8K5-06 18 45566983 45566983 C T ZBTB7C Missense_Mutation p.D166N 0.40 tolerated(0.25) possibly_damaging(0.587) TCGA-WE-A8K5-06 18 46645158 46645158 G A DYM Nonsense_Mutation p.R568* 0.33 TCGA-WE-A8K5-06 18 46784814 46784814 G A DYM Missense_Mutation p.S434F 0.44 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K5-06 18 47389605 47389605 C T MYO5B Silent p.Q1312Q 0.33 TCGA-WE-A8K5-06 18 50832017 50832017 C T DCC Nonsense_Mutation p.R661* 0.37 TCGA-WE-A8K5-06 18 51888195 51888195 C T C18orf54 Missense_Mutation p.R156C 0.47 tolerated(0.19) benign(0.121) TCGA-WE-A8K5-06 18 55222103 55222103 G A FECH Missense_Mutation p.P302S 0.40 deleterious(0.05) benign(0.13) TCGA-WE-A8K5-06 18 6080951 6080951 C T L3MBTL4 Splice_Site p.X458_splice 0.42 TCGA-WE-A8K5-06 18 61225607 61225607 C T SERPINB12 Missense_Mutation p.S64F 0.29 tolerated(0.22) possibly_damaging(0.519) TCGA-WE-A8K5-06 18 67860621 67860621 G A RTTN Missense_Mutation p.P304S 0.36 tolerated(0.35) benign(0.22) TCGA-WE-A8K5-06 18 70417789 70417789 G A NETO1 Missense_Mutation p.S350F 0.33 tolerated(0.3) benign(0.174) TCGA-WE-A8K5-06 18 7231169 7231169 G A LRRC30 Silent p.K11K 0.48 TCGA-WE-A8K5-06 18 74611016 74611016 C T ZNF236 Nonsense_Mutation p.R576* 0.34 TCGA-WE-A8K5-06 18 74980582 74980582 C T GALR1 Silent p.I258I 0.35 TCGA-WE-A8K5-06 18 74980695 74980695 C T GALR1 Missense_Mutation p.S296F 0.31 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 19 10795478 10795478 T C ILF3 Intron 0.40 TCGA-WE-A8K5-06 19 11097613 11097613 C T SMARCA4 Missense_Mutation p.P265S 0.28 benign(0.068) TCGA-WE-A8K5-06 19 11333681 11333681 G A DOCK6 Silent p.A1019A 0.53 TCGA-WE-A8K5-06 19 11892212 11892212 C T ZNF441 Missense_Mutation p.H525Y 0.43 deleterious(0.01) probably_damaging(0.917) TCGA-WE-A8K5-06 19 12015693 12015693 C T ZNF69 Missense_Mutation p.P147S 0.41 deleterious(0) benign(0.077) TCGA-WE-A8K5-06 19 1387835 1387835 C T NDUFS7 Silent p.I14I 0.31 TCGA-WE-A8K5-06 19 14772775 14772775 C T EMR3 Missense_Mutation p.D119N 0.41 tolerated(0.31) benign(0.002) TCGA-WE-A8K5-06 19 15124516 15124516 G A CCDC105 Nonsense_Mutation p.W201* 0.45 TCGA-WE-A8K5-06 19 15289967 15289967 C T NOTCH3 Missense_Mutation p.G1196E 0.33 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 19 15791091 15791091 C T CYP4F12 Silent p.F127F 0.45 TCGA-WE-A8K5-06 19 15989635 15989635 C T CYP4F2 Silent p.E503E 0.20 TCGA-WE-A8K5-06 19 17373378 17373378 C T USHBP1 Missense_Mutation p.E209K 0.41 deleterious(0.02) benign(0.091) TCGA-WE-A8K5-06 19 17394506 17394506 C T ANKLE1 Silent p.T311T 0.22 TCGA-WE-A8K5-06 19 17394507 17394507 C T ANKLE1 Missense_Mutation p.P312S 0.22 tolerated(0.3) benign(0.002) TCGA-WE-A8K5-06 19 17837053 17837053 C G MAP1S Missense_Mutation p.A287G 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-WE-A8K5-06 19 17918603 17918603 C T B3GNT3 5'UTR 0.36 TCGA-WE-A8K5-06 19 1796992 1796992 T G ATP8B3 Missense_Mutation p.E522A 0.26 tolerated(0.05) benign(0.081) TCGA-WE-A8K5-06 19 18123820 18123820 C T ARRDC2 3'UTR 0.41 TCGA-WE-A8K5-06 19 19648282 19648282 C T YJEFN3 Silent p.F283F 0.56 TCGA-WE-A8K5-06 19 19656506 19656506 C T CILP2 Missense_Mutation p.P1051L 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 19 19680312 19680312 G A PBX4 Silent p.P238P 0.42 TCGA-WE-A8K5-06 19 20117586 20117586 G A ZNF682 Missense_Mutation p.S242L 0.37 deleterious(0.04) possibly_damaging(0.697) TCGA-WE-A8K5-06 19 20736640 20736640 C T ZNF737 Missense_Mutation p.G2E 0.39 tolerated(0.14) possibly_damaging(0.52) TCGA-WE-A8K5-06 19 22018881 22018881 C T ZNF43 5'UTR 0.42 TCGA-WE-A8K5-06 19 22574644 22574644 C T ZNF98 Missense_Mutation p.E465K 0.30 tolerated(0.23) benign(0.007) TCGA-WE-A8K5-06 19 2276446 2276446 C T C19orf35 Missense_Mutation p.E219K 0.41 tolerated(0.4) benign(0.359) TCGA-WE-A8K5-06 19 22847741 22847741 G A ZNF492 Missense_Mutation p.E424K 0.15 tolerated(0.17) benign(0.003) TCGA-WE-A8K5-06 19 23927069 23927069 C T ZNF681 Missense_Mutation p.G428D 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-WE-A8K5-06 19 23927898 23927898 G A ZNF681 Missense_Mutation p.H152Y 0.31 tolerated(0.26) benign(0.403) TCGA-WE-A8K5-06 19 23941662 23941662 C T ZNF681 5'UTR 0.51 TCGA-WE-A8K5-06 19 2434052 2434052 G C LMNB2 Silent p.T418T 0.27 TCGA-WE-A8K5-06 19 30935390 30935390 C T ZNF536 Silent p.F307F 0.25 TCGA-WE-A8K5-06 19 31039935 31039935 G A ZNF536 Missense_Mutation p.G1137R 0.48 tolerated_low_confidence(0.51) benign(0.136) TCGA-WE-A8K5-06 19 3155875 3155875 C T GNA15 Silent p.F223F 0.38 TCGA-WE-A8K5-06 19 34263626 34263626 C T CHST8 Silent p.F311F 0.29 TCGA-WE-A8K5-06 19 35836514 35836514 G A CD22 Missense_Mutation p.A740T 0.56 tolerated(0.49) benign(0.011) TCGA-WE-A8K5-06 19 35941246 35941246 C T FFAR2 Silent p.P210P 0.25 TCGA-WE-A8K5-06 19 36213313 36213313 C T KMT2B Missense_Mutation p.S837F 0.42 benign(0.051) TCGA-WE-A8K5-06 19 36220083 36220083 C TA KMT2B Frame_Shift_Ins p.G1602Rfs*76 0.38 TCGA-WE-A8K5-06 19 36940559 36940559 G A ZNF566 Missense_Mutation p.H194Y 0.21 deleterious(0.03) possibly_damaging(0.536) TCGA-WE-A8K5-06 19 3728416 3728416 G A TJP3 Intron 0.18 TCGA-WE-A8K5-06 19 37644095 37644095 G A ZNF585A Missense_Mutation p.H181Y 0.19 deleterious(0) probably_damaging(0.932) TCGA-WE-A8K5-06 19 37838737 37838737 G A HKR1 Nonsense_Mutation p.W92* 0.56 TCGA-WE-A8K5-06 19 38818083 38818083 G A KCNK6 3'UTR 0.62 TCGA-WE-A8K5-06 19 38987583 38987583 G A RYR1 Missense_Mutation p.D2294N 0.29 benign(0.214) TCGA-WE-A8K5-06 19 39994796 39994796 C T DLL3 Silent p.P246P 0.44 TCGA-WE-A8K5-06 19 39996033 39996033 C T DLL3 Silent p.F345F 0.61 TCGA-WE-A8K5-06 19 40357449 40357449 C T FCGBP Silent p.T5288T 0.20 TCGA-WE-A8K5-06 19 40368805 40368805 C T FCGBP Silent p.S4181S 0.11 TCGA-WE-A8K5-06 19 40384003 40384003 G A FCGBP Missense_Mutation p.P3203S 0.10 benign(0) TCGA-WE-A8K5-06 19 4117509 4117509 C T MAP2K2 Missense_Mutation p.D71N 0.38 tolerated(0.07) benign(0.275) TCGA-WE-A8K5-06 19 41510272 41510272 C T CYP2B6 Silent p.F135F 0.16 TCGA-WE-A8K5-06 19 42479928 42479928 C T ATP1A3 Missense_Mutation p.G719R 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 19 43371263 43371263 G A PSG1 3'Flank 0.23 TCGA-WE-A8K5-06 19 43433651 43433651 C T PSG7 Missense_Mutation p.E218K 0.45 deleterious(0) probably_damaging(0.909) TCGA-WE-A8K5-06 19 43439770 43439770 G A PSG7 Silent p.I72I 0.23 TCGA-WE-A8K5-06 19 43757695 43757695 C T PSG9 3'UTR 0.14 TCGA-WE-A8K5-06 19 43766213 43766213 C T PSG9 Missense_Mutation p.D170N 0.42 tolerated(0.05) benign(0.182) TCGA-WE-A8K5-06 19 43922487 43922487 C T TEX101 Missense_Mutation p.P248S 0.20 tolerated(1) benign(0.007) TCGA-WE-A8K5-06 19 43965961 43965961 G A LYPD3 Nonsense_Mutation p.Q195* 0.63 TCGA-WE-A8K5-06 19 44680167 44680167 C T ZNF226 Missense_Mutation p.S251L 0.25 tolerated(0.09) benign(0.002) TCGA-WE-A8K5-06 19 44832534 44832534 G A ZNF112 Silent p.G598G 0.48 TCGA-WE-A8K5-06 19 45316533 45316533 G A BCAM Silent p.G177G 0.18 TCGA-WE-A8K5-06 19 49166724 49166724 G A NTN5 Silent p.D367D 0.25 TCGA-WE-A8K5-06 19 49206637 49206637 G A FUT2 Missense_Mutation p.G142R 0.19 deleterious(0.05) probably_damaging(0.961) TCGA-WE-A8K5-06 19 50905947 50905947 A G POLD1 Missense_Mutation p.I307V 0.54 tolerated(0.73) benign(0.163) TCGA-WE-A8K5-06 19 51629370 51629370 C T SIGLEC9 Nonsense_Mutation p.Q245* 0.41 TCGA-WE-A8K5-06 19 51994946 51994946 C T SIGLEC12 Silent p.Q579Q 0.27 TCGA-WE-A8K5-06 19 52003339 52003339 C T SIGLEC12 Missense_Mutation p.D215N 0.47 deleterious(0.03) possibly_damaging(0.497) TCGA-WE-A8K5-06 19 52034212 52034212 G A SIGLEC6 Silent p.A143A 0.24 TCGA-WE-A8K5-06 19 52132726 52132726 G A SIGLEC5 Silent p.S195S 0.47 TCGA-WE-A8K5-06 19 52249191 52249191 C T FPR1 3'UTR 0.27 TCGA-WE-A8K5-06 19 52249792 52249792 C T FPR1 Missense_Mutation p.M152I 0.22 deleterious(0.03) benign(0.043) TCGA-WE-A8K5-06 19 52399796 52399796 G A ZNF649 Missense_Mutation p.A56V 0.51 tolerated(0.49) benign(0.004) TCGA-WE-A8K5-06 19 52942068 52942068 C T ZNF534 Missense_Mutation p.S465F 0.46 tolerated(0.69) benign(0.029) TCGA-WE-A8K5-06 19 52955103 52955103 G T ZNF578 5'Flank 0.25 TCGA-WE-A8K5-06 19 53014449 53014449 G A ZNF578 Missense_Mutation p.R272Q 0.22 tolerated(0.15) benign(0) TCGA-WE-A8K5-06 19 53208331 53208331 G A ZNF611 Silent p.F659F 0.24 TCGA-WE-A8K5-06 19 53343234 53343234 G A ZNF468 3'UTR 0.59 TCGA-WE-A8K5-06 19 53994939 53994939 C T ZNF813 Missense_Mutation p.H485Y 0.48 deleterious(0.01) probably_damaging(0.962) TCGA-WE-A8K5-06 19 54742776 54742776 G A LILRA6 3'UTR 0.37 TCGA-WE-A8K5-06 19 54782133 54782133 G A LILRB2 Silent p.P413P 0.27 TCGA-WE-A8K5-06 19 55020262 55020262 G A LAIR2 Missense_Mutation p.D128N 0.19 tolerated(0.19) benign(0.07) TCGA-WE-A8K5-06 19 55107271 55107271 C T LILRA1 Missense_Mutation p.L277F 0.38 deleterious(0.03) probably_damaging(0.964) TCGA-WE-A8K5-06 19 55221932 55221932 C T AC098784.2 3'Flank 0.35 TCGA-WE-A8K5-06 19 55399440 55399440 C T FCAR Missense_Mutation p.S143F 0.42 tolerated(0.06) probably_damaging(0.99) TCGA-WE-A8K5-06 19 5623331 5623331 C T SAFB Silent p.L39L 0.36 TCGA-WE-A8K5-06 19 56372857 56372857 C T NLRP4 Silent p.T654T 0.22 TCGA-WE-A8K5-06 19 56443587 56443587 C T NLRP13 Missense_Mutation p.E31K 0.63 tolerated(0.55) probably_damaging(0.932) TCGA-WE-A8K5-06 19 56467130 56467130 C T NLRP8 Missense_Mutation p.S569L 0.53 tolerated(0.87) benign(0) TCGA-WE-A8K5-06 19 56515140 56515140 C A NLRP5 Missense_Mutation p.P41T 0.48 tolerated(0.49) benign(0.015) TCGA-WE-A8K5-06 19 56515179 56515179 G A NLRP5 Missense_Mutation p.G54R 0.30 tolerated(0.21) benign(0.024) TCGA-WE-A8K5-06 19 5667081 5667081 C T SAFB Missense_Mutation p.P787S 0.38 tolerated(0.15) unknown(0) TCGA-WE-A8K5-06 19 56704137 56704137 G A ZSCAN5B Silent p.S95S 0.40 TCGA-WE-A8K5-06 19 57642303 57642303 G A USP29 Missense_Mutation p.G754S 0.30 tolerated(1) benign(0.003) TCGA-WE-A8K5-06 19 57642311 57642311 G A USP29 Silent p.R756R 0.28 TCGA-WE-A8K5-06 19 58265565 58265565 C T ZNF776 Missense_Mutation p.S356L 0.48 deleterious(0.04) possibly_damaging(0.864) TCGA-WE-A8K5-06 19 58565257 58565257 G A ZSCAN1 Silent p.K355K 0.56 TCGA-WE-A8K5-06 19 58574860 58574860 G A ZNF135 Silent p.E81E 0.28 TCGA-WE-A8K5-06 19 6468327 6468327 C T DENND1C Missense_Mutation p.G570E 0.36 tolerated(1) benign(0.004) TCGA-WE-A8K5-06 19 7566139 7566139 G A C19orf45 Missense_Mutation p.R144Q 0.38 tolerated(1) benign(0.002) TCGA-WE-A8K5-06 19 7585254 7585254 C T ZNF358 Missense_Mutation p.R376C 0.42 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 19 7916343 7916343 C T EVI5L Silent p.T259T 0.26 TCGA-WE-A8K5-06 19 8586439 8586439 G A MYO1F Silent p.F1090F 0.34 TCGA-WE-A8K5-06 19 8661016 8661016 C T ADAMTS10 Missense_Mutation p.M426I 0.47 tolerated(0.21) probably_damaging(0.969) TCGA-WE-A8K5-06 19 9004886 9004886 G A MUC16 Missense_Mutation p.S13311F 0.40 possibly_damaging(0.901) TCGA-WE-A8K5-06 19 9046602 9046602 G A MUC16 Missense_Mutation p.R11677W 0.41 benign(0.098) TCGA-WE-A8K5-06 19 9060464 9060464 C T MUC16 Missense_Mutation p.M8994I 0.44 unknown(0) TCGA-WE-A8K5-06 19 9075788 9075788 C T MUC16 Missense_Mutation p.M3886I 0.33 unknown(0) TCGA-WE-A8K5-06 19 9204583 9204583 C T OR1M1 Silent p.I221I 0.39 TCGA-WE-A8K5-06 19 9213689 9213689 C T OR7G2 Silent p.T98T 0.32 TCGA-WE-A8K5-06 19 9577548 9577548 G A ZNF560 Missense_Mutation p.S692F 0.39 tolerated(0.21) possibly_damaging(0.831) TCGA-WE-A8K5-06 1 100624896 100624896 G A LRRC39 Missense_Mutation p.P99S 0.31 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 100626104 100626104 C T LRRC39 Missense_Mutation p.R46Q 0.29 tolerated(0.08) probably_damaging(0.985) TCGA-WE-A8K5-06 1 101705515 101705515 C T S1PR1 Silent p.I325I 0.47 TCGA-WE-A8K5-06 1 103487286 103487286 C T COL11A1 Missense_Mutation p.G429R 0.17 probably_damaging(1) TCGA-WE-A8K5-06 1 103491867 103491867 C T COL11A1 Missense_Mutation p.E268K 0.63 benign(0.124) TCGA-WE-A8K5-06 1 104162381 104162381 G A AMY2A Missense_Mutation p.G240E 0.21 deleterious(0.01) benign(0.258) TCGA-WE-A8K5-06 1 107961267 107961267 G A NTNG1 Intron 0.56 TCGA-WE-A8K5-06 1 110032639 110032639 C T ATXN7L2 Silent p.P375P 0.62 TCGA-WE-A8K5-06 1 110766353 110766353 C T KCNC4 Silent p.A482A 0.29 TCGA-WE-A8K5-06 1 115161056 115161056 C T DENND2C Silent p.K425K 0.46 TCGA-WE-A8K5-06 1 115398073 115398073 C T SYCP1 5'UTR 0.29 TCGA-WE-A8K5-06 1 115401267 115401267 G A SYCP1 Missense_Mutation p.E131K 0.49 deleterious(0) probably_damaging(0.988) TCGA-WE-A8K5-06 1 115829201 115829201 C T NGF Silent p.V72V 0.33 TCGA-WE-A8K5-06 1 11589914 11589914 G A PTCHD2 Silent p.A1000A 0.48 TCGA-WE-A8K5-06 1 117311445 117311445 G A CD2 3'UTR 0.17 TCGA-WE-A8K5-06 1 11775187 11775187 G A DRAXIN Missense_Mutation p.D287N 0.33 tolerated(0.09) benign(0.406) TCGA-WE-A8K5-06 1 119958096 119958096 C T HSD3B2 Silent p.I18I 0.48 TCGA-WE-A8K5-06 1 120928458 120928458 C T FCGR1B Intron 0.18 TCGA-WE-A8K5-06 1 12837417 12837417 C T PRAMEF12 Missense_Mutation p.S376F 0.28 tolerated(0.45) possibly_damaging(0.474) TCGA-WE-A8K5-06 1 12888524 12888524 G A PRAMEF11 5'UTR 0.36 TCGA-WE-A8K5-06 1 12980013 12980013 G A PRAMEF7 Missense_Mutation p.G402E 0.36 benign(0.264) TCGA-WE-A8K5-06 1 13036303 13036303 C T PRAMEF22 Silent p.S125S 0.64 TCGA-WE-A8K5-06 1 144916573 144916573 C T PDE4DIP Silent p.V594V 0.23 TCGA-WE-A8K5-06 1 147380325 147380325 G A GJA8 Silent p.Q81Q 0.09 TCGA-WE-A8K5-06 1 151400470 151400470 T C POGZ Missense_Mutation p.T303A 0.62 tolerated(0.26) benign(0.145) TCGA-WE-A8K5-06 1 151739651 151739651 G A OAZ3 Silent p.K15K 0.63 TCGA-WE-A8K5-06 1 152327903 152327903 C T FLG2 Missense_Mutation p.G787R 0.13 unknown(0) TCGA-WE-A8K5-06 1 152538398 152538398 G A LCE3E 3'UTR 0.25 TCGA-WE-A8K5-06 1 153177315 153177315 C T LELP1 Silent p.F44F 0.37 TCGA-WE-A8K5-06 1 153279607 153279607 G A PGLYRP3 Silent p.S64S 0.12 TCGA-WE-A8K5-06 1 154233384 154233384 C T UBAP2L Silent p.F865F 0.11 TCGA-WE-A8K5-06 1 15430618 15430618 C T KAZN Missense_Mutation p.P661S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K5-06 1 154461533 154461533 G A SHE Silent p.L340L 0.30 TCGA-WE-A8K5-06 1 154965116 154965116 C T FLAD1 Intron 0.33 TCGA-WE-A8K5-06 1 154999063 154999063 G A DCST2 Missense_Mutation p.R491C 0.25 deleterious(0) possibly_damaging(0.873) TCGA-WE-A8K5-06 1 155039206 155039206 G A EFNA4 Silent p.R38R 0.65 TCGA-WE-A8K5-06 1 155252304 155252304 C T HCN3 Silent p.I127I 0.11 TCGA-WE-A8K5-06 1 155491393 155491393 G A ASH1L 5'UTR 0.30 TCGA-WE-A8K5-06 1 155582664 155582664 C T MSTO1 Silent p.I332I 0.32 TCGA-WE-A8K5-06 1 156214027 156214027 G A PAQR6 Silent p.T227T 0.40 TCGA-WE-A8K5-06 1 156347120 156347120 C T RHBG Silent p.F72F 0.10 TCGA-WE-A8K5-06 1 156533411 156533411 G A IQGAP3 Nonsense_Mutation p.Q185* 0.26 TCGA-WE-A8K5-06 1 156882360 156882360 G A PEAR1 Missense_Mutation p.E719K 0.15 tolerated(0.76) benign(0.15) TCGA-WE-A8K5-06 1 156941597 156941597 C T ARHGEF11 Silent p.E198E 0.26 TCGA-WE-A8K5-06 1 15794027 15794027 C T CELA2A Silent p.I262I 0.13 TCGA-WE-A8K5-06 1 158324169 158324169 C T CD1E Missense_Mutation p.P21S 0.44 tolerated(0.37) benign(0.018) TCGA-WE-A8K5-06 1 158326190 158326190 G A CD1E Intron 0.37 TCGA-WE-A8K5-06 1 158369190 158369190 C T OR10T2 Missense_Mutation p.E23K 0.16 tolerated(0.19) benign(0.05) TCGA-WE-A8K5-06 1 158436237 158436237 G A OR10K1 Missense_Mutation p.E296K 0.50 deleterious(0.02) possibly_damaging(0.69) TCGA-WE-A8K5-06 1 158590018 158590018 G A SPTA1 Missense_Mutation p.T2120I 0.41 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 158609735 158609735 C T SPTA1 Silent p.G1600G 0.11 TCGA-WE-A8K5-06 1 158636135 158636135 G A SPTA1 Missense_Mutation p.L731F 0.10 tolerated(0.07) benign(0.075) TCGA-WE-A8K5-06 1 158670392 158670392 G A OR6K2 Silent p.F17F 0.19 TCGA-WE-A8K5-06 1 158813174 158813174 C T MNDA Missense_Mutation p.S124L 0.31 tolerated(0.07) benign(0.194) TCGA-WE-A8K5-06 1 159015113 159015113 G A IFI16 Missense_Mutation p.M452I 0.23 tolerated(0.23) benign(0.043) TCGA-WE-A8K5-06 1 159169587 159169587 C T CADM3 Silent p.I367I 0.38 TCGA-WE-A8K5-06 1 159277736 159277736 G A FCER1A 3'UTR 0.25 TCGA-WE-A8K5-06 1 159847195 159847195 C T CCDC19 Missense_Mutation p.E368K 0.31 deleterious(0) probably_damaging(0.986) TCGA-WE-A8K5-06 1 159898079 159898079 G A IGSF9 Silent p.F1033F 0.15 TCGA-WE-A8K5-06 1 160718045 160718045 C T SLAMF7 Silent p.F39F 0.35 TCGA-WE-A8K5-06 1 160811111 160811111 C T CD244 Missense_Mutation p.E187K 0.28 tolerated(0.21) possibly_damaging(0.657) TCGA-WE-A8K5-06 1 161047494 161047494 T A PVRL4 Missense_Mutation p.E160V 0.25 tolerated(0.8) benign(0.086) TCGA-WE-A8K5-06 1 161049667 161049667 G A PVRL4 Missense_Mutation p.P51L 0.38 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 1 161087981 161087981 C T NIT1 Intron 0.43 TCGA-WE-A8K5-06 1 161199489 161199489 C T NR1I3 3'UTR 0.30 TCGA-WE-A8K5-06 1 161993248 161993248 C T OLFML2B 5'UTR 0.47 TCGA-WE-A8K5-06 1 16270177 16270177 C T ZBTB17 Missense_Mutation p.G498E 0.53 deleterious(0) possibly_damaging(0.625) TCGA-WE-A8K5-06 1 16464528 16464528 G A EPHA2 Missense_Mutation p.P378S 0.54 tolerated(0.09) benign(0.001) TCGA-WE-A8K5-06 1 164815956 164815956 G A PBX1 3'UTR 0.30 TCGA-WE-A8K5-06 1 165649727 165649727 C T ALDH9A1 Missense_Mutation p.M262I 0.58 deleterious(0.03) benign(0) TCGA-WE-A8K5-06 1 165712512 165712512 G A TMCO1 Silent p.T171T 0.24 TCGA-WE-A8K5-06 1 167742593 167742593 G A MPZL1 Missense_Mutation p.R198Q 0.31 tolerated(0.15) benign(0.007) TCGA-WE-A8K5-06 1 167806554 167806554 C T ADCY10 Missense_Mutation p.E1004K 0.57 tolerated(0.62) benign(0.001) TCGA-WE-A8K5-06 1 16809851 16809851 G A CROCCP3 RNA 0.45 TCGA-WE-A8K5-06 1 1688303 1688303 A G NADK Intron 0.25 TCGA-WE-A8K5-06 1 169388186 169388186 C T CCDC181 Intron 0.26 TCGA-WE-A8K5-06 1 169698427 169698427 G A SELE Silent p.S330S 0.24 TCGA-WE-A8K5-06 1 171077322 171077322 G A FMO3 Missense_Mutation p.G196D 0.18 deleterious(0) probably_damaging(0.973) TCGA-WE-A8K5-06 1 171086346 171086346 C T FMO3 Missense_Mutation p.P455S 0.55 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 171250034 171250034 C T FMO1 Missense_Mutation p.S246F 0.51 tolerated(0.54) benign(0.01) TCGA-WE-A8K5-06 1 171251132 171251132 G A FMO1 Silent p.E281E 0.47 TCGA-WE-A8K5-06 1 173776404 173776404 C A CENPL Splice_Site p.X140_splice 0.33 TCGA-WE-A8K5-06 1 174417327 174417327 C T GPR52 Silent p.S26S 0.42 TCGA-WE-A8K5-06 1 17674527 17674527 C T PADI4 Missense_Mutation p.P380L 0.35 deleterious(0.01) probably_damaging(0.941) TCGA-WE-A8K5-06 1 177249629 177249629 G A BRINP2 Silent p.Q439Q 0.41 TCGA-WE-A8K5-06 1 181706661 181706661 G A CACNA1E Silent p.P1141P 0.24 TCGA-WE-A8K5-06 1 181726211 181726211 C T CACNA1E Silent p.F1426F 0.12 TCGA-WE-A8K5-06 1 181741361 181741361 C T CACNA1E Silent p.S1711S 0.13 TCGA-WE-A8K5-06 1 183177060 183177060 G A LAMC2 Missense_Mutation p.E42K 0.38 deleterious(0.01) benign(0.027) TCGA-WE-A8K5-06 1 183273865 183273865 G A NMNAT2 Intron 0.31 TCGA-WE-A8K5-06 1 186934597 186934597 C T PLA2G4A Missense_Mutation p.H546Y 0.30 tolerated(0.51) possibly_damaging(0.773) TCGA-WE-A8K5-06 1 18808309 18808309 G A KLHDC7A Silent p.A278A 0.17 TCGA-WE-A8K5-06 1 18809058 18809058 C T KLHDC7A Missense_Mutation p.A528V 0.22 tolerated(0.59) benign(0.06) TCGA-WE-A8K5-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.28 deleterious(0) possibly_damaging(0.871) TCGA-WE-A8K5-06 1 190067958 190067958 C T BRINP3 Missense_Mutation p.M497I 0.37 tolerated(0.08) benign(0.001) TCGA-WE-A8K5-06 1 196300312 196300312 G A KCNT2 Missense_Mutation p.P693S 0.10 tolerated(0.07) probably_damaging(0.998) TCGA-WE-A8K5-06 1 198718604 198718604 G A PTPRC Missense_Mutation p.D1000N 0.38 deleterious(0.03) probably_damaging(0.984) TCGA-WE-A8K5-06 1 198725302 198725302 G A PTPRC Missense_Mutation p.G1305S 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-WE-A8K5-06 1 200376410 200376410 C G ZNF281 Missense_Mutation p.Q808H 0.23 deleterious(0) probably_damaging(0.993) TCGA-WE-A8K5-06 1 201191881 201191881 C T IGFN1 Missense_Mutation p.L3406F 0.16 possibly_damaging(0.816) TCGA-WE-A8K5-06 1 201196013 201196013 G A IGFN1 Missense_Mutation p.R3597K 0.17 benign(0.084) TCGA-WE-A8K5-06 1 204006184 204006184 G A LINC00303 Intron 0.14 TCGA-WE-A8K5-06 1 204095213 204095213 C G SOX13 Missense_Mutation p.S607W 0.28 deleterious(0.04) probably_damaging(1) TCGA-WE-A8K5-06 1 204198212 204198212 G A PLEKHA6 Silent p.I868I 0.24 TCGA-WE-A8K5-06 1 205632261 205632261 C T SLC45A3 Missense_Mutation p.E220K 0.17 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 1 205764135 205764135 G A SLC41A1 Missense_Mutation p.R407C 0.23 deleterious(0) probably_damaging(0.91) TCGA-WE-A8K5-06 1 205890930 205890930 G A SLC26A9 Missense_Mutation p.P607S 0.33 tolerated(0.14) benign(0.147) TCGA-WE-A8K5-06 1 205892310 205892310 G A SLC26A9 Missense_Mutation p.P558L 0.40 tolerated(0.21) probably_damaging(0.998) TCGA-WE-A8K5-06 1 206944284 206944284 G A IL10 Silent p.L116L 0.24 TCGA-WE-A8K5-06 1 206944751 206944751 C T IL10 Missense_Mutation p.D59N 0.40 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 207105061 207105061 C T PIGR Missense_Mutation p.G699R 0.40 deleterious(0.01) probably_damaging(0.974) TCGA-WE-A8K5-06 1 209803236 209803236 G A LAMB3 Silent p.H326H 0.36 TCGA-WE-A8K5-06 1 210329189 210329189 G A SYT14 Missense_Mutation p.G475R 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 21296080 21296080 G A EIF4G3 Missense_Mutation p.R152W 0.28 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 1 214705762 214705762 G A PTPN14 Intron 0.37 TCGA-WE-A8K5-06 1 216052177 216052177 C T USH2A Silent p.V2829V 0.19 TCGA-WE-A8K5-06 1 216496904 216496904 G A USH2A Missense_Mutation p.H488Y 0.18 benign(0.151) TCGA-WE-A8K5-06 1 22148030 22148030 G A LDLRAD2 Missense_Mutation p.G244E 0.48 tolerated(0.27) benign(0.048) TCGA-WE-A8K5-06 1 222717310 222717310 G A HHIPL2 Silent p.F181F 0.16 TCGA-WE-A8K5-06 1 223176405 223176405 C T DISP1 Missense_Mutation p.P556S 0.38 deleterious(0) possibly_damaging(0.882) TCGA-WE-A8K5-06 1 223176566 223176566 C T DISP1 Silent p.F609F 0.45 TCGA-WE-A8K5-06 1 223568190 223568190 G A C1orf65 Missense_Mutation p.R458Q 0.38 tolerated(0.31) benign(0.036) TCGA-WE-A8K5-06 1 226420790 226420790 G A LIN9 Intron 0.33 TCGA-WE-A8K5-06 1 228469884 228469884 C T OBSCN Silent p.S3245S 0.39 TCGA-WE-A8K5-06 1 228494222 228494222 C T OBSCN Missense_Mutation p.P4894S 0.20 possibly_damaging(0.546) TCGA-WE-A8K5-06 1 228524772 228524772 C T OBSCN Silent p.F6492F 0.19 TCGA-WE-A8K5-06 1 230846351 230846351 C T AGT Silent p.K82K 0.22 TCGA-WE-A8K5-06 1 230915935 230915935 G A CAPN9 Nonsense_Mutation p.W375* 0.21 TCGA-WE-A8K5-06 1 233490632 233490632 G A MLK4 Missense_Mutation p.E396K 0.32 tolerated(0.4) possibly_damaging(0.474) TCGA-WE-A8K5-06 1 233802496 233802496 C T KCNK1 Missense_Mutation p.R171C 0.24 deleterious(0.03) possibly_damaging(0.808) TCGA-WE-A8K5-06 1 234454675 234454675 C T SLC35F3 Missense_Mutation p.S378L 0.19 deleterious(0) possibly_damaging(0.487) TCGA-WE-A8K5-06 1 236902819 236902819 G A ACTN2 Missense_Mutation p.G365D 0.50 deleterious(0.04) possibly_damaging(0.783) TCGA-WE-A8K5-06 1 23758200 23758200 G A ASAP3 Silent p.P845P 0.44 TCGA-WE-A8K5-06 1 237620007 237620007 C T RYR2 Silent p.S528S 0.31 TCGA-WE-A8K5-06 1 23767619 23767619 C T ASAP3 Missense_Mutation p.G307D 0.44 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 237713868 237713868 C T RYR2 Missense_Mutation p.R1031C 0.29 probably_damaging(0.987) TCGA-WE-A8K5-06 1 237801663 237801663 C T RYR2 Missense_Mutation p.R2267C 0.18 possibly_damaging(0.806) TCGA-WE-A8K5-06 1 240070791 240070791 C T CHRM3 Missense_Mutation p.P14S 0.20 tolerated_low_confidence(1) benign(0) TCGA-WE-A8K5-06 1 240255822 240255822 C T FMN2 Missense_Mutation p.P138L 0.35 unknown(0) TCGA-WE-A8K5-06 1 240286604 240286604 C T FMN2 Missense_Mutation p.P581S 0.23 unknown(0) TCGA-WE-A8K5-06 1 240371903 240371903 C T FMN2 Missense_Mutation p.P1264L 0.42 possibly_damaging(0.803) TCGA-WE-A8K5-06 1 240371929 240371929 G A FMN2 Missense_Mutation p.G1273R 0.28 probably_damaging(0.986) TCGA-WE-A8K5-06 1 240979687 240979687 C T RGS7 Missense_Mutation p.R238K 0.25 tolerated(0.5) probably_damaging(0.954) TCGA-WE-A8K5-06 1 243328326 243328326 G A CEP170 Missense_Mutation p.S979L 0.10 tolerated(0.26) benign(0.04) TCGA-WE-A8K5-06 1 245772587 245772587 C T KIF26B Silent p.I557I 0.31 TCGA-WE-A8K5-06 1 246704397 246704397 G C TFB2M Missense_Mutation p.T376S 0.21 deleterious(0.01) possibly_damaging(0.844) TCGA-WE-A8K5-06 1 247654897 247654897 C T OR2W5 RNA 0.43 TCGA-WE-A8K5-06 1 247769778 247769778 G A OR2G3 Missense_Mutation p.M297I 0.32 deleterious(0.01) benign(0) TCGA-WE-A8K5-06 1 247921348 247921348 C T OR1C1 Missense_Mutation p.D121N 0.22 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K5-06 1 247921523 247921523 G A OR1C1 Silent p.F62F 0.43 TCGA-WE-A8K5-06 1 248263418 248263418 G A OR2L13 Silent p.V247V 0.36 TCGA-WE-A8K5-06 1 248263591 248263591 G A OR2L13 Missense_Mutation p.G305E 0.38 deleterious(0.02) benign(0.03) TCGA-WE-A8K5-06 1 248343781 248343781 C T OR2M2 Missense_Mutation p.S165F 0.18 deleterious(0.02) benign(0.33) TCGA-WE-A8K5-06 1 248458745 248458745 G A OR2T12 Silent p.L46L 0.28 TCGA-WE-A8K5-06 1 248486965 248486965 C T OR2M7 Missense_Mutation p.M302I 0.19 deleterious(0.01) benign(0.001) TCGA-WE-A8K5-06 1 248551026 248551026 G A OR2T6 Missense_Mutation p.M39I 0.21 tolerated(0.21) benign(0) TCGA-WE-A8K5-06 1 248551571 248551571 T G OR2T6 Missense_Mutation p.I221S 0.18 deleterious(0) probably_damaging(0.949) TCGA-WE-A8K5-06 1 248569544 248569544 C T OR2T1 Silent p.I83I 0.18 TCGA-WE-A8K5-06 1 248636928 248636928 G A OR2T3 Missense_Mutation p.G93R 0.12 deleterious(0.01) probably_damaging(0.945) TCGA-WE-A8K5-06 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.35 deleterious(0) possibly_damaging(0.815) TCGA-WE-A8K5-06 1 248737947 248737947 G A OR2T34 Missense_Mutation p.L38F 0.22 deleterious(0.04) benign(0) TCGA-WE-A8K5-06 1 248756739 248756739 C T OR2T10 Missense_Mutation p.E111K 0.77 deleterious(0.01) possibly_damaging(0.589) TCGA-WE-A8K5-06 1 26691260 26691260 G A ZNF683 Silent p.A259A 0.23 TCGA-WE-A8K5-06 1 26899813 26899813 C T RPS6KA1 Silent p.P691P 0.23 TCGA-WE-A8K5-06 1 27708997 27708997 C T CD164L2 Silent p.E83E 0.21 TCGA-WE-A8K5-06 1 28891336 28891336 G A TRNAU1AP Missense_Mutation p.G134S 0.17 tolerated(0.06) probably_damaging(0.943) TCGA-WE-A8K5-06 1 2938436 2938436 C T ACTRT2 Silent p.A62A 0.17 TCGA-WE-A8K5-06 1 31349555 31349555 G A SDC3 Silent p.V238V 0.24 TCGA-WE-A8K5-06 1 32688000 32688000 C T EIF3I 5'UTR 0.41 TCGA-WE-A8K5-06 1 34038176 34038176 G A CSMD2 Silent p.G2566G 0.18 TCGA-WE-A8K5-06 1 34158591 34158591 G A CSMD2 Missense_Mutation p.P1291S 0.21 deleterious(0.05) benign(0.261) TCGA-WE-A8K5-06 1 34383853 34383853 G A CSMD2 Silent p.S214S 0.30 TCGA-WE-A8K5-06 1 34684334 34684334 C T C1orf94 Missense_Mutation p.S590F 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-WE-A8K5-06 1 36564764 36564764 C T COL8A2 Missense_Mutation p.G173E 0.42 deleterious(0) unknown(0) TCGA-WE-A8K5-06 1 3669063 3669063 C T CCDC27 Silent p.F6F 0.42 TCGA-WE-A8K5-06 1 38227348 38227348 C T EPHA10 Silent p.Q193Q 0.57 TCGA-WE-A8K5-06 1 40766815 40766815 C T COL9A2 3'UTR 0.19 TCGA-WE-A8K5-06 1 43649280 43649280 G A WDR65 Missense_Mutation p.D165N 0.50 tolerated(0.16) possibly_damaging(0.789) TCGA-WE-A8K5-06 1 44423934 44423934 C T IPO13 Silent p.I581I 0.51 TCGA-WE-A8K5-06 1 47284423 47284423 C T CYP4B1 Silent p.V492V 0.28 TCGA-WE-A8K5-06 1 47403719 47403719 G A CYP4A11 Missense_Mutation p.R96C 0.38 tolerated(0.09) benign(0.035) TCGA-WE-A8K5-06 1 47614415 47614415 C T CYP4A22 Silent p.I502I 0.32 TCGA-WE-A8K5-06 1 53995577 53995577 G A GLIS1 Missense_Mutation p.H282Y 0.42 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K5-06 1 55152110 55152110 C T MROH7 Silent p.F900F 0.16 TCGA-WE-A8K5-06 1 55183302 55183302 C T TTC4 Missense_Mutation p.R123W 0.46 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 1 57347158 57347158 G A C8A Missense_Mutation p.D169N 0.22 deleterious(0) probably_damaging(0.951) TCGA-WE-A8K5-06 1 57383308 57383308 G A C8A Silent p.R558R 0.23 TCGA-WE-A8K5-06 1 62740309 62740309 C T KANK4 Missense_Mutation p.R156Q 0.39 deleterious(0) probably_damaging(0.988) TCGA-WE-A8K5-06 1 63066843 63066843 G A ANGPTL3 Missense_Mutation p.E233K 0.28 tolerated(0.67) benign(0.002) TCGA-WE-A8K5-06 1 64515425 64515425 G A ROR1 Missense_Mutation p.E76K 0.21 tolerated(0.88) benign(0.232) TCGA-WE-A8K5-06 1 65099876 65099876 C T CACHD1 Silent p.H262H 0.20 TCGA-WE-A8K5-06 1 67292637 67292637 C T WDR78 Silent p.E735E 0.25 TCGA-WE-A8K5-06 1 70486699 70486699 G A LRRC7 Missense_Mutation p.D440N 0.39 deleterious(0.04) probably_damaging(0.989) TCGA-WE-A8K5-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.46 tolerated(0.27) benign(0.035) TCGA-WE-A8K5-06 1 75037310 75037310 C T C1orf173 Missense_Mutation p.G1362S 0.22 deleterious(0.02) benign(0.167) TCGA-WE-A8K5-06 1 75038553 75038553 C T C1orf173 Silent p.E947E 0.57 TCGA-WE-A8K5-06 1 78959042 78959042 T A PTGFR Missense_Mutation p.F205Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 1 79403662 79403662 G A ELTD1 Missense_Mutation p.T197I 0.39 deleterious(0.03) benign(0.098) TCGA-WE-A8K5-06 1 7995164 7995164 C T TNFRSF9 Silent p.T151T 0.12 TCGA-WE-A8K5-06 1 82408831 82408831 C T LPHN2 Silent p.F192F 0.11 TCGA-WE-A8K5-06 1 90398987 90398987 C T LRRC8D Silent p.F120F 0.20 TCGA-WE-A8K5-06 1 94481354 94481354 C T ABCA4 Silent p.K1751K 0.55 TCGA-WE-A8K5-06 1 94512551 94512551 G A ABCA4 Missense_Mutation p.R948C 0.47 tolerated(0.1) benign(0.001) TCGA-WE-A8K5-06 1 94520823 94520823 G A ABCA4 Missense_Mutation p.R811C 0.61 tolerated(0.06) probably_damaging(0.982) TCGA-WE-A8K5-06 1 98058887 98058887 C T DPYD Missense_Mutation p.G339R 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 20 1456792 1456792 C T SIRPB2 3'UTR 0.37 TCGA-WE-A8K5-06 20 1629840 1629840 C T SIRPG Silent p.K96K 0.28 TCGA-WE-A8K5-06 20 18143179 18143179 C T CSRP2BP Missense_Mutation p.P421S 0.32 tolerated(0.69) benign(0.001) TCGA-WE-A8K5-06 20 29623129 29623129 G A FRG1B Intron 0.03 TCGA-WE-A8K5-06 20 3025437 3025437 C T GNRH2 Silent p.A89A 0.17 TCGA-WE-A8K5-06 20 31812219 31812219 G A BPIFA3 Missense_Mutation p.E113K 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-WE-A8K5-06 20 34095902 34095902 G A CEP250 Missense_Mutation p.M2263I 0.44 benign(0.009) TCGA-WE-A8K5-06 20 3640879 3640879 A C GFRA4 Missense_Mutation p.F249V 0.24 deleterious(0) benign(0.307) TCGA-WE-A8K5-06 20 37581221 37581221 C T FAM83D 3'UTR 0.32 TCGA-WE-A8K5-06 20 37623488 37623488 C T DHX35 Nonsense_Mutation p.R203* 0.33 TCGA-WE-A8K5-06 20 41400080 41400080 G A PTPRT Missense_Mutation p.L227F 0.35 deleterious(0.01) probably_damaging(0.962) TCGA-WE-A8K5-06 20 42162692 42162692 G A L3MBTL1 Missense_Mutation p.E498K 0.37 deleterious(0.02) possibly_damaging(0.667) TCGA-WE-A8K5-06 20 43251667 43251667 G A ADA Missense_Mutation p.S220L 0.38 deleterious(0.04) benign(0.008) TCGA-WE-A8K5-06 20 43739088 43739088 C T WFDC5 Missense_Mutation p.R107Q 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8K5-06 20 43851581 43851581 C T SEMG2 Silent p.I436I 0.44 TCGA-WE-A8K5-06 20 43942119 43942119 T C RBPJL Missense_Mutation p.S211P 0.45 deleterious(0.01) possibly_damaging(0.575) TCGA-WE-A8K5-06 20 44313357 44313357 C T WFDC10B 3'UTR 0.45 TCGA-WE-A8K5-06 20 48522909 48522909 G A SPATA2 Silent p.A270A 0.44 TCGA-WE-A8K5-06 20 50159030 50159030 G A NFATC2 Silent p.A3A 0.57 TCGA-WE-A8K5-06 20 51870333 51870333 C T TSHZ2 Silent p.V112V 0.26 TCGA-WE-A8K5-06 20 52601947 52601947 G A BCAS1 Missense_Mutation p.S340F 0.39 deleterious(0) benign(0.4) TCGA-WE-A8K5-06 20 52612523 52612523 C T BCAS1 Missense_Mutation p.D264N 0.32 tolerated(0.15) possibly_damaging(0.754) TCGA-WE-A8K5-06 20 55212806 55212806 G A TFAP2C Missense_Mutation p.E364K 0.34 deleterious(0) benign(0.041) TCGA-WE-A8K5-06 20 60427917 60427917 G A CDH4 Silent p.Q280Q 0.39 TCGA-WE-A8K5-06 20 60448952 60448952 G A CDH4 Missense_Mutation p.R349Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K5-06 20 6057879 6057879 C T FERMT1 Missense_Mutation p.D659N 0.28 deleterious(0) possibly_damaging(0.753) TCGA-WE-A8K5-06 20 60898889 60898889 C T LAMA5 Missense_Mutation p.R1931Q 0.47 benign(0.062) TCGA-WE-A8K5-06 20 61525790 61525790 G A DIDO1 Silent p.F849F 0.33 TCGA-WE-A8K5-06 20 62338443 62338443 T C ARFRP1 Translation_Start_Site p.M1? 0.40 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K5-06 20 62642790 62642790 C T PRPF6 Silent p.I486I 0.33 TCGA-WE-A8K5-06 20 62730195 62730195 C T OPRL1 3'UTR 0.29 TCGA-WE-A8K5-06 20 7894878 7894878 C T HAO1 Missense_Mutation p.D160N 0.26 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K5-06 20 8745947 8745947 G A PLCB1 Missense_Mutation p.D958N 0.53 tolerated(0.17) benign(0.017) TCGA-WE-A8K5-06 21 11047563 11047563 C A BAGE2 RNA 0.05 TCGA-WE-A8K5-06 21 15326410 15326410 C T ANKRD20A11P RNA 0.32 TCGA-WE-A8K5-06 21 19629396 19629396 G A CHODL Missense_Mutation p.D167N 0.29 deleterious(0) probably_damaging(0.982) TCGA-WE-A8K5-06 21 27840852 27840852 G A CYYR1 Missense_Mutation p.P145S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-WE-A8K5-06 21 27840930 27840930 C T CYYR1 Missense_Mutation p.D119N 0.40 tolerated(0.15) benign(0.027) TCGA-WE-A8K5-06 21 32185335 32185335 G A KRTAP8-1 3'UTR 0.30 TCGA-WE-A8K5-06 21 33076188 33076188 G A SCAF4 Nonsense_Mutation p.R71* 0.30 TCGA-WE-A8K5-06 21 33749606 33749606 G A URB1 Intron 0.33 TCGA-WE-A8K5-06 21 38997496 38997496 C T KCNJ6 Missense_Mutation p.D413N 0.34 tolerated(0.44) benign(0.006) TCGA-WE-A8K5-06 21 39580335 39580335 C T DSCR10 RNA 0.54 TCGA-WE-A8K5-06 21 45503056 45503056 G A TRAPPC10 Missense_Mutation p.R704K 0.46 tolerated(0.09) benign(0.035) TCGA-WE-A8K5-06 21 47860879 47860879 G A PCNT Missense_Mutation p.E3169K 0.30 possibly_damaging(0.874) TCGA-WE-A8K5-06 22 17073229 17073229 C T CCT8L2 Missense_Mutation p.G71E 0.40 deleterious(0.01) possibly_damaging(0.842) TCGA-WE-A8K5-06 22 19165471 19165471 G A SLC25A1 Missense_Mutation p.P96S 0.20 deleterious(0.01) possibly_damaging(0.854) TCGA-WE-A8K5-06 22 19343288 19343288 G A HIRA Silent p.S852S 0.50 TCGA-WE-A8K5-06 22 20760534 20760534 C G ZNF74 Missense_Mutation p.T404S 0.08 tolerated(0.28) probably_damaging(0.981) TCGA-WE-A8K5-06 22 21385198 21385198 C T SLC7A4 Missense_Mutation p.D302N 0.41 tolerated(0.43) benign(0.021) TCGA-WE-A8K5-06 22 22724205 22724205 G C IGLV7-46 Missense_Mutation p.G34A 0.34 TCGA-WE-A8K5-06 22 22989484 22989484 G A GGTLC2 Silent p.T112T 0.34 TCGA-WE-A8K5-06 22 23438371 23438371 C T GNAZ Silent p.I163I 0.42 TCGA-WE-A8K5-06 22 24125673 24125673 C T MMP11 Missense_Mutation p.P470L 0.34 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 22 24622225 24622225 G T GGT5 Silent p.R350R 0.50 TCGA-WE-A8K5-06 22 24658562 24658562 C T POM121L9P RNA 0.39 TCGA-WE-A8K5-06 22 26688639 26688639 C T SEZ6L Missense_Mutation p.S121L 0.38 tolerated_low_confidence(0.09) benign(0.003) TCGA-WE-A8K5-06 22 32193624 32193624 C T DEPDC5 Missense_Mutation p.S269L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K5-06 22 35942961 35942961 C T RASD2 Silent p.I35I 0.47 TCGA-WE-A8K5-06 22 43996059 43996059 C T EFCAB6 Silent p.R922R 0.33 TCGA-WE-A8K5-06 22 43996060 43996060 C T EFCAB6 Missense_Mutation p.R922Q 0.32 tolerated(0.13) benign(0.185) TCGA-WE-A8K5-06 22 44067981 44067981 C T EFCAB6 Silent p.R504R 0.46 TCGA-WE-A8K5-06 22 45919042 45919042 C T FBLN1 Intron 0.46 TCGA-WE-A8K5-06 22 50218009 50218009 C T BRD1 5'UTR 0.56 TCGA-WE-A8K5-06 22 50719895 50719895 G A PLXNB2 Missense_Mutation p.R1186C 0.29 deleterious(0.01) probably_damaging(0.935) TCGA-WE-A8K5-06 2 102955354 102955354 G A IL1RL1 Missense_Mutation p.G40E 0.39 tolerated(1) benign(0.02) TCGA-WE-A8K5-06 2 103274436 103274436 C T SLC9A2 Missense_Mutation p.L235F 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 2 108604571 108604571 G A SLC5A7 5'UTR 0.29 TCGA-WE-A8K5-06 2 10911982 10911982 G A ATP6V1C2 Missense_Mutation p.R163Q 0.37 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K5-06 2 10911983 10911983 G A ATP6V1C2 Silent p.R163R 0.37 TCGA-WE-A8K5-06 2 111562948 111562948 T A ACOXL Silent p.A243A 0.40 TCGA-WE-A8K5-06 2 113671406 113671406 C T IL37 Silent p.L40L 0.27 TCGA-WE-A8K5-06 2 11758485 11758485 C T GREB1 Nonsense_Mutation p.Q1162* 0.38 TCGA-WE-A8K5-06 2 11802319 11802319 G A NTSR2 Silent p.F224F 0.37 TCGA-WE-A8K5-06 2 124783119 124783119 G A CNTNAP5 5'UTR 0.60 TCGA-WE-A8K5-06 2 125671801 125671801 C T CNTNAP5 Missense_Mutation p.S1286F 0.28 deleterious(0.03) probably_damaging(0.933) TCGA-WE-A8K5-06 2 130737616 130737616 C T RAB6C 5'UTR 0.10 TCGA-WE-A8K5-06 2 131976158 131976158 G A POTEE Missense_Mutation p.M61I 0.35 deleterious_low_confidence(0) benign(0.019) TCGA-WE-A8K5-06 2 131976306 131976306 G A POTEE Missense_Mutation p.G111R 0.36 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-WE-A8K5-06 2 132021366 132021366 G A POTEE Missense_Mutation p.D780N 0.31 deleterious_low_confidence(0.02) benign(0.249) TCGA-WE-A8K5-06 2 135596255 135596255 G A ACMSD Translation_Start_Site p.M1? 0.37 deleterious(0.04) benign(0.049) TCGA-WE-A8K5-06 2 135988237 135988237 G A ZRANB3 Silent p.I600I 0.41 TCGA-WE-A8K5-06 2 141215150 141215150 C T LRP1B Silent p.G3232G 0.37 TCGA-WE-A8K5-06 2 141773306 141773306 C T LRP1B Missense_Mutation p.D717N 0.32 possibly_damaging(0.555) TCGA-WE-A8K5-06 2 14774076 14774076 T G FAM84A 5'UTR 0.38 TCGA-WE-A8K5-06 2 1500474 1500474 C T TPO Nonsense_Mutation p.Q775* 0.38 TCGA-WE-A8K5-06 2 152319683 152319683 C T RIF1 Missense_Mutation p.R1217W 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 2 152423802 152423802 G A NEB Silent p.A6012A 0.30 TCGA-WE-A8K5-06 2 152482091 152482091 G A NEB Missense_Mutation p.P3470L 0.34 probably_damaging(1) TCGA-WE-A8K5-06 2 152548434 152548434 G A NEB Missense_Mutation p.P719S 0.42 probably_damaging(1) TCGA-WE-A8K5-06 2 163074534 163074534 C T FAP Missense_Mutation p.E242K 0.36 tolerated(0.08) benign(0.07) TCGA-WE-A8K5-06 2 167300041 167300041 C T SCN7A Missense_Mutation p.G591E 0.41 deleterious(0.04) benign(0.052) TCGA-WE-A8K5-06 2 167322333 167322333 C T SCN7A Missense_Mutation p.E277K 0.32 tolerated(0.59) benign(0.026) TCGA-WE-A8K5-06 2 1680705 1680705 C T PXDN Missense_Mutation p.R281Q 0.22 tolerated(0.19) benign(0.087) TCGA-WE-A8K5-06 2 168725796 168725796 C T B3GALT1 Missense_Mutation p.L83F 0.38 deleterious(0.01) probably_damaging(0.948) TCGA-WE-A8K5-06 2 170034531 170034531 G A LRP2 Missense_Mutation p.S3392F 0.41 probably_damaging(0.985) TCGA-WE-A8K5-06 2 170502469 170502469 C T CCDC173 Missense_Mutation p.G514E 0.42 deleterious(0.04) benign(0.248) TCGA-WE-A8K5-06 2 173891343 173891343 G A RAPGEF4 Missense_Mutation p.G766E 0.38 tolerated(1) benign(0.008) TCGA-WE-A8K5-06 2 175213514 175213514 G A CIR1 Missense_Mutation p.S355F 0.37 tolerated_low_confidence(0.15) possibly_damaging(0.569) TCGA-WE-A8K5-06 2 179409073 179409073 G A TTN Silent p.T31961T 0.28 TCGA-WE-A8K5-06 2 179411820 179411820 C T TTN Missense_Mutation p.E31478K 0.41 TCGA-WE-A8K5-06 2 179426624 179426624 G A TTN Missense_Mutation p.P28079S 0.40 TCGA-WE-A8K5-06 2 179427853 179427853 C T TTN Missense_Mutation p.R27669K 0.37 TCGA-WE-A8K5-06 2 179429027 179429027 C T TTN Missense_Mutation p.D27278N 0.36 TCGA-WE-A8K5-06 2 179435350 179435350 C T TTN Missense_Mutation p.S25170N 0.47 TCGA-WE-A8K5-06 2 179444318 179444318 C T TTN Missense_Mutation p.E22536K 0.36 TCGA-WE-A8K5-06 2 179455323 179455323 T C TTN Missense_Mutation p.N20377D 0.40 TCGA-WE-A8K5-06 2 179458734 179458734 C T TTN Silent p.E19462E 0.46 TCGA-WE-A8K5-06 2 179464033 179464033 C T TTN Silent p.R18829R 0.47 TCGA-WE-A8K5-06 2 179474163 179474163 C T TTN Missense_Mutation p.E17292K 0.35 TCGA-WE-A8K5-06 2 179482090 179482090 G A TTN Missense_Mutation p.R15908C 0.41 TCGA-WE-A8K5-06 2 179497117 179497117 G A TTN Missense_Mutation p.P14502S 0.33 TCGA-WE-A8K5-06 2 179577272 179577272 C T TTN Missense_Mutation p.G9126E 0.41 TCGA-WE-A8K5-06 2 179580341 179580341 G A TTN Silent p.F8600F 0.38 TCGA-WE-A8K5-06 2 179587614 179587614 C T TTN Missense_Mutation p.D7338N 0.22 TCGA-WE-A8K5-06 2 179590530 179590530 C T TTN Missense_Mutation p.G6840E 0.36 TCGA-WE-A8K5-06 2 179593275 179593275 C T TTN Missense_Mutation p.E6460K 0.36 TCGA-WE-A8K5-06 2 179593459 179593459 C G TTN Missense_Mutation p.E6398D 0.42 TCGA-WE-A8K5-06 2 179593743 179593743 G A TTN Missense_Mutation p.S6341L 0.20 TCGA-WE-A8K5-06 2 179605517 179605517 G A TTN Missense_Mutation p.P4148L 0.40 TCGA-WE-A8K5-06 2 179612551 179612551 C G TTN Intron 0.47 TCGA-WE-A8K5-06 2 179642101 179642101 C G TTN Intron 0.32 TCGA-WE-A8K5-06 2 179659918 179659918 G A TTN Missense_Mutation p.L326F 0.36 TCGA-WE-A8K5-06 2 179701795 179701795 C T CCDC141 Missense_Mutation p.R1384K 0.52 tolerated(0.16) benign(0.133) TCGA-WE-A8K5-06 2 180634422 180634422 C T ZNF385B Missense_Mutation p.E21K 0.36 deleterious_low_confidence(0.01) benign(0.024) TCGA-WE-A8K5-06 2 183094806 183094806 G A PDE1A Missense_Mutation p.P217L 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-WE-A8K5-06 2 183094807 183094807 G A PDE1A Missense_Mutation p.P217S 0.31 deleterious(0) probably_damaging(0.955) TCGA-WE-A8K5-06 2 186670181 186670181 C T FSIP2 Missense_Mutation p.A5472V 0.28 benign(0.25) TCGA-WE-A8K5-06 2 187693001 187693001 G A ZSWIM2 Missense_Mutation p.H538Y 0.35 tolerated(0.22) benign(0.006) TCGA-WE-A8K5-06 2 189873795 189873795 C T COL3A1 Missense_Mutation p.P1224L 0.31 unknown(0) TCGA-WE-A8K5-06 2 189904220 189904220 C T COL5A2 Missense_Mutation p.D1235N 0.21 unknown(0) TCGA-WE-A8K5-06 2 189916065 189916065 G A COL5A2 Missense_Mutation p.P971L 0.43 unknown(0) TCGA-WE-A8K5-06 2 192012885 192012885 C T STAT4 Silent p.L15L 0.38 TCGA-WE-A8K5-06 2 1926908 1926908 G A MYT1L Silent p.I211I 0.47 TCGA-WE-A8K5-06 2 196636578 196636578 C T DNAH7 Missense_Mutation p.E3747K 0.44 deleterious(0.03) possibly_damaging(0.752) TCGA-WE-A8K5-06 2 196718096 196718096 G A DNAH7 Missense_Mutation p.L2918F 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-WE-A8K5-06 2 196729289 196729289 G A DNAH7 Nonsense_Mutation p.Q2364* 0.34 TCGA-WE-A8K5-06 2 196729290 196729290 G A DNAH7 Silent p.F2363F 0.34 TCGA-WE-A8K5-06 2 198270163 198270163 G A SF3B1 Nonsense_Mutation p.R425* 0.55 TCGA-WE-A8K5-06 2 198273158 198273158 G A SF3B1 Missense_Mutation p.P351L 0.27 deleterious(0.01) benign(0.008) TCGA-WE-A8K5-06 2 198273159 198273159 G A SF3B1 Missense_Mutation p.P351S 0.28 deleterious(0.03) benign(0.014) TCGA-WE-A8K5-06 2 198358125 198358125 G A HSPD1 Silent p.A264A 0.41 TCGA-WE-A8K5-06 2 207175935 207175935 C T ZDBF2 Missense_Mutation p.S2228L 0.50 tolerated(0.66) benign(0.32) TCGA-WE-A8K5-06 2 207509099 207509099 C T AC010731.4 RNA 0.38 TCGA-WE-A8K5-06 2 208994325 208994325 C T CRYGC Missense_Mutation p.S31N 0.42 tolerated(0.28) benign(0.023) TCGA-WE-A8K5-06 2 208994327 208994327 G A CRYGC Silent p.F30F 0.42 TCGA-WE-A8K5-06 2 21232668 21232668 T A APOB Missense_Mutation p.M2358L 0.34 benign(0.001) TCGA-WE-A8K5-06 2 21236086 21236086 G A APOB Missense_Mutation p.R1388C 0.41 benign(0.333) TCGA-WE-A8K5-06 2 213872717 213872717 C T IKZF2 Missense_Mutation p.M316I 0.33 tolerated(0.24) probably_damaging(0.943) TCGA-WE-A8K5-06 2 218925765 218925765 C T CXCR2P1 RNA 0.47 TCGA-WE-A8K5-06 2 219290494 219290494 G A VIL1 Missense_Mutation p.E103K 0.40 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 2 220494888 220494888 C T SLC4A3 Missense_Mutation p.R236W 0.31 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-WE-A8K5-06 2 223781144 223781144 C T ACSL3 Silent p.I162I 0.48 TCGA-WE-A8K5-06 2 227922268 227922268 C T COL4A4 Missense_Mutation p.R811K 0.27 benign(0.158) TCGA-WE-A8K5-06 2 231150485 231150485 G A SP140 Missense_Mutation p.G528D 0.69 tolerated(0.23) benign(0.396) TCGA-WE-A8K5-06 2 24286001 24286001 C T FKBP1B Missense_Mutation p.P89L 0.46 deleterious(0.04) possibly_damaging(0.564) TCGA-WE-A8K5-06 2 29295861 29295861 G A C2orf71 Nonsense_Mutation p.Q423* 0.44 TCGA-WE-A8K5-06 2 30955370 30955370 C G CAPN13 Missense_Mutation p.D621H 0.38 deleterious(0.03) benign(0.358) TCGA-WE-A8K5-06 2 30957324 30957324 C T CAPN13 Missense_Mutation p.E597K 0.47 tolerated(0.57) benign(0.005) TCGA-WE-A8K5-06 2 30980933 30980933 C T CAPN13 Nonsense_Mutation p.W282* 0.20 TCGA-WE-A8K5-06 2 33335666 33335666 C T LTBP1 Missense_Mutation p.S294F 0.50 deleterious(0) probably_damaging(0.979) TCGA-WE-A8K5-06 2 37596876 37596876 C T QPCT Missense_Mutation p.P258S 0.33 tolerated(0.38) benign(0.184) TCGA-WE-A8K5-06 2 43984295 43984295 C T PLEKHH2 Missense_Mutation p.P1278L 0.37 deleterious(0.02) benign(0.135) TCGA-WE-A8K5-06 2 48915389 48915389 G A LHCGR Missense_Mutation p.P516L 0.30 deleterious(0) probably_damaging(0.914) TCGA-WE-A8K5-06 2 51255155 51255155 C T NRXN1 Missense_Mutation p.G86D 0.36 tolerated(0.42) probably_damaging(0.994) TCGA-WE-A8K5-06 2 68873429 68873429 C T PROKR1 Missense_Mutation p.A159V 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-WE-A8K5-06 2 69034499 69034499 C T ARHGAP25 Silent p.F187F 0.37 TCGA-WE-A8K5-06 2 6991691 6991691 G A CMPK2 Silent p.I372I 0.37 TCGA-WE-A8K5-06 2 70451754 70451754 G A TIA1 Nonsense_Mutation p.R136* 0.33 TCGA-WE-A8K5-06 2 73681137 73681137 C T ALMS1 Missense_Mutation p.H2494Y 0.41 probably_damaging(0.988) TCGA-WE-A8K5-06 2 73777523 73777523 C G ALMS1 Missense_Mutation p.S3345C 0.32 probably_damaging(0.969) TCGA-WE-A8K5-06 2 74042651 74042651 G A C2orf78 Missense_Mutation p.G434E 0.31 tolerated(0.35) benign(0.109) TCGA-WE-A8K5-06 2 74074845 74074845 C T STAMBP Missense_Mutation p.S236F 0.36 deleterious(0) probably_damaging(0.994) TCGA-WE-A8K5-06 2 85051165 85051165 C T TRABD2A Missense_Mutation p.E367K 0.39 tolerated(0.08) benign(0.113) TCGA-WE-A8K5-06 2 85051268 85051268 G A TRABD2A Silent p.V332V 0.33 TCGA-WE-A8K5-06 2 85097666 85097666 C T TRABD2A Missense_Mutation p.D118N 0.50 deleterious(0) possibly_damaging(0.901) TCGA-WE-A8K5-06 2 85097667 85097667 C T TRABD2A Silent p.R117R 0.47 TCGA-WE-A8K5-06 2 86265846 86265846 G A POLR1A Silent p.D1337D 0.40 TCGA-WE-A8K5-06 2 89326922 89326922 G A IGKV3-11 Silent p.L31L 0.38 TCGA-WE-A8K5-06 2 90044342 90044342 G A IGKV2D-24 Missense_Mutation p.S88N 0.34 deleterious(0) possibly_damaging(0.776) TCGA-WE-A8K5-06 2 90193322 90193322 G A IGKV1D-13 Silent p.R83R 0.36 TCGA-WE-A8K5-06 2 95484658 95484658 T A ANKRD20A8P RNA 0.30 TCGA-WE-A8K5-06 2 96795718 96795718 C T ASTL Splice_Site p.X240_splice 0.36 TCGA-WE-A8K5-06 2 97024798 97024798 C T NCAPH Silent p.S408S 0.46 TCGA-WE-A8K5-06 2 97024799 97024799 C T NCAPH Missense_Mutation p.L409F 0.45 tolerated(0.33) benign(0.151) TCGA-WE-A8K5-06 3 101232041 101232041 G A SENP7 5'Flank 0.47 TCGA-WE-A8K5-06 3 101520161 101520161 G A NXPE3 Missense_Mutation p.R59Q 0.44 tolerated(0.18) benign(0.067) TCGA-WE-A8K5-06 3 10312278 10312278 C T TATDN2 Missense_Mutation p.P471L 0.44 tolerated(0.24) benign(0.003) TCGA-WE-A8K5-06 3 105404311 105404311 C T CBLB Splice_Site p.X685_splice 0.44 TCGA-WE-A8K5-06 3 10885924 10885924 G A SLC6A11 Missense_Mutation p.G217R 0.34 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 111769564 111769564 G A TMPRSS7 Silent p.G253G 0.37 TCGA-WE-A8K5-06 3 111831682 111831682 G A C3orf52 Intron 0.47 TCGA-WE-A8K5-06 3 112064011 112064011 G A CD200 Silent p.L124L 0.38 TCGA-WE-A8K5-06 3 113329965 113329965 G A SIDT1 Missense_Mutation p.V611I 0.40 tolerated(0.31) possibly_damaging(0.665) TCGA-WE-A8K5-06 3 113955422 113955422 C T ZNF80 Missense_Mutation p.G167E 0.38 tolerated(0.11) possibly_damaging(0.908) TCGA-WE-A8K5-06 3 119211293 119211293 C T POGLUT1 3'UTR 0.24 TCGA-WE-A8K5-06 3 119466722 119466722 G A MAATS1 Missense_Mutation p.V706M 0.30 deleterious(0) probably_damaging(0.943) TCGA-WE-A8K5-06 3 119545552 119545552 T C GSK3B 3'UTR 0.33 TCGA-WE-A8K5-06 3 120941903 120941903 G A STXBP5L Missense_Mutation p.R337K 0.34 tolerated(0.21) benign(0.026) TCGA-WE-A8K5-06 3 121215718 121215718 G A POLQ Nonsense_Mutation p.Q739* 0.34 TCGA-WE-A8K5-06 3 121345738 121345738 G A FBXO40 Missense_Mutation p.R704Q 0.31 tolerated_low_confidence(0.2) benign(0.007) TCGA-WE-A8K5-06 3 121613350 121613350 C T SLC15A2 Silent p.S9S 0.30 TCGA-WE-A8K5-06 3 122446662 122446662 G A PARP14 Missense_Mutation p.E1649K 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-WE-A8K5-06 3 123452631 123452631 G A MYLK Silent p.P404P 0.37 TCGA-WE-A8K5-06 3 126071728 126071728 G A KLF15 Missense_Mutation p.S13L 0.30 tolerated_low_confidence(0.67) benign(0.364) TCGA-WE-A8K5-06 3 128628986 128628986 C T ACAD9 Silent p.D562D 0.30 TCGA-WE-A8K5-06 3 129151957 129151957 G A MBD4 Silent p.T515T 0.42 TCGA-WE-A8K5-06 3 129251510 129251510 C T RHO Silent p.T277T 0.37 TCGA-WE-A8K5-06 3 129290538 129290538 G A PLXND1 Missense_Mutation p.P1076L 0.42 deleterious(0) possibly_damaging(0.859) TCGA-WE-A8K5-06 3 129370606 129370606 G A TMCC1 Silent p.S560S 0.45 TCGA-WE-A8K5-06 3 129370607 129370607 G A TMCC1 Missense_Mutation p.S560F 0.44 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K5-06 3 132075747 132075747 G A ACPP Intron 0.42 TCGA-WE-A8K5-06 3 133169231 133169231 C T BFSP2 Missense_Mutation p.L272F 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 136664698 136664698 C T NCK1 Missense_Mutation p.P167L 0.30 tolerated(0.3) benign(0.04) TCGA-WE-A8K5-06 3 138669468 138669468 G A C3orf72 3'UTR 0.32 TCGA-WE-A8K5-06 3 140407134 140407134 C T TRIM42 Missense_Mutation p.S537F 0.40 tolerated(0.57) benign(0.157) TCGA-WE-A8K5-06 3 141278739 141278739 C T RASA2 Silent p.I255I 0.31 TCGA-WE-A8K5-06 3 142215915 142215915 G A ATR Missense_Mutation p.S1893F 0.44 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 150264576 150264576 C T EIF2A 5'UTR 0.35 TCGA-WE-A8K5-06 3 151599480 151599480 G A SUCNR1 3'UTR 0.62 TCGA-WE-A8K5-06 3 155267707 155267707 G A PLCH1 Nonsense_Mutation p.Q399* 0.29 TCGA-WE-A8K5-06 3 15605047 15605047 G A HACL1 Missense_Mutation p.P508S 0.48 deleterious(0.03) possibly_damaging(0.714) TCGA-WE-A8K5-06 3 158983214 158983214 G A IQCJ 3'UTR 0.56 TCGA-WE-A8K5-06 3 160395081 160395081 G A ARL14 5'UTR 0.30 TCGA-WE-A8K5-06 3 16327874 16327874 G T OXNAD1 Missense_Mutation p.G70V 0.38 deleterious(0) benign(0.382) TCGA-WE-A8K5-06 3 164777087 164777087 C T SI Missense_Mutation p.D383N 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 164905811 164905811 G A SLITRK3 Silent p.L936L 0.37 TCGA-WE-A8K5-06 3 167183435 167183435 C T SERPINI2 Missense_Mutation p.E169K 0.29 tolerated(0.16) benign(0.207) TCGA-WE-A8K5-06 3 167249036 167249036 C T WDR49 Silent p.G343G 0.30 TCGA-WE-A8K5-06 3 169664395 169664395 G A RP11-379K17.4 RNA 0.42 TCGA-WE-A8K5-06 3 170800093 170800093 C T TNIK Missense_Mutation p.R1087Q 0.43 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K5-06 3 180377491 180377491 C T CCDC39 Missense_Mutation p.E195K 0.35 deleterious(0.02) benign(0.345) TCGA-WE-A8K5-06 3 189690743 189690743 C T LEPREL1 Missense_Mutation p.R540K 0.70 tolerated(0.95) benign(0.001) TCGA-WE-A8K5-06 3 189692443 189692443 G A LEPREL1 Silent p.F452F 0.68 TCGA-WE-A8K5-06 3 193130079 193130079 G A ATP13A4 Silent p.T1032T 0.34 TCGA-WE-A8K5-06 3 195984740 195984740 G A PCYT1A Missense_Mutation p.P46S 0.43 deleterious(0.01) benign(0.446) TCGA-WE-A8K5-06 3 197427516 197427516 G A KIAA0226 Missense_Mutation p.S410L 0.30 deleterious(0) probably_damaging(0.917) TCGA-WE-A8K5-06 3 197803814 197803814 C T ANKRD18DP RNA 0.29 TCGA-WE-A8K5-06 3 21706482 21706482 G A ZNF385D Missense_Mutation p.R21C 0.39 deleterious(0.02) benign(0.336) TCGA-WE-A8K5-06 3 24138856 24138856 G A LINC00691 RNA 0.25 TCGA-WE-A8K5-06 3 31712435 31712435 G A OSBPL10 Silent p.F589F 0.40 TCGA-WE-A8K5-06 3 36874242 36874242 G A TRANK1 Missense_Mutation p.H2234Y 0.43 deleterious(0.01) benign(0.157) TCGA-WE-A8K5-06 3 36874848 36874848 C T TRANK1 Missense_Mutation p.E2032K 0.36 tolerated(0.6) benign(0.006) TCGA-WE-A8K5-06 3 38052853 38052853 G A PLCD1 Silent p.I235I 0.42 TCGA-WE-A8K5-06 3 38598048 38598048 C T SCN5A Missense_Mutation p.E1441K 0.37 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K5-06 3 38739037 38739037 C T SCN10A Missense_Mutation p.E1892K 0.44 tolerated(0.23) possibly_damaging(0.873) TCGA-WE-A8K5-06 3 38835261 38835261 C T SCN10A Missense_Mutation p.D81N 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 3887668 3887668 G A LRRN1 Missense_Mutation p.R448Q 0.41 tolerated(0.11) probably_damaging(0.949) TCGA-WE-A8K5-06 3 38908899 38908899 G A SCN11A Silent p.F1288F 0.28 TCGA-WE-A8K5-06 3 38913139 38913139 G A SCN11A Missense_Mutation p.L1186F 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 3 39225646 39225646 G A XIRP1 Missense_Mutation p.A1764V 0.40 deleterious(0.02) benign(0.012) TCGA-WE-A8K5-06 3 46009101 46009101 G A FYCO1 Silent p.V575V 0.31 TCGA-WE-A8K5-06 3 46245157 46245157 G A CCR1 Silent p.I216I 0.35 TCGA-WE-A8K5-06 3 46307446 46307446 C T CCR3 Missense_Mutation p.S287F 0.40 deleterious(0.02) benign(0.325) TCGA-WE-A8K5-06 3 48462356 48462356 G A PLXNB1 Missense_Mutation p.S607F 0.57 deleterious(0) benign(0.265) TCGA-WE-A8K5-06 3 4859880 4859880 C T ITPR1 Missense_Mutation p.S2646F 0.19 deleterious(0) possibly_damaging(0.594) TCGA-WE-A8K5-06 3 48612819 48612819 G A COL7A1 Missense_Mutation p.P2045S 0.29 unknown(0) TCGA-WE-A8K5-06 3 48618034 48618034 G A COL7A1 Missense_Mutation p.P1678S 0.28 unknown(0) TCGA-WE-A8K5-06 3 48732515 48732515 G A IP6K2 Intron 0.32 TCGA-WE-A8K5-06 3 49094589 49094589 G A QRICH1 Silent p.A348A 0.42 TCGA-WE-A8K5-06 3 49094590 49094590 G A QRICH1 Missense_Mutation p.A348V 0.42 tolerated(0.12) benign(0.016) TCGA-WE-A8K5-06 3 49694076 49694076 G A BSN Missense_Mutation p.E2363K 0.45 unknown(0) TCGA-WE-A8K5-06 3 51455620 51455620 C T VPRBP Nonsense_Mutation p.W727* 0.30 TCGA-WE-A8K5-06 3 51457820 51457820 G A VPRBP Silent p.T439T 0.29 TCGA-WE-A8K5-06 3 51863459 51863459 G A IQCF3 5'UTR 0.36 TCGA-WE-A8K5-06 3 52470077 52470077 C T SEMA3G Missense_Mutation p.E631K 0.50 deleterious(0.01) possibly_damaging(0.747) TCGA-WE-A8K5-06 3 52485804 52485804 C T TNNC1 Silent p.G91G 0.39 TCGA-WE-A8K5-06 3 52546956 52546956 C T STAB1 Missense_Mutation p.T1047M 0.30 tolerated(0.99) benign(0.001) TCGA-WE-A8K5-06 3 52558206 52558206 G A STAB1 Missense_Mutation p.D2545N 0.47 tolerated(0.37) benign(0.025) TCGA-WE-A8K5-06 3 64589957 64589957 C T ADAMTS9 Silent p.R1175R 0.36 TCGA-WE-A8K5-06 3 65607689 65607689 G A MAGI1 Nonsense_Mutation p.Q130* 0.39 TCGA-WE-A8K5-06 3 68587941 68587941 G A FAM19A1 Missense_Mutation p.M98I 0.47 deleterious(0) probably_damaging(0.954) TCGA-WE-A8K5-06 3 7188179 7188179 G A GRM7 Missense_Mutation p.S187N 0.40 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K5-06 3 73113280 73113280 T G PPP4R2 Missense_Mutation p.N207K 0.41 tolerated(0.44) benign(0.243) TCGA-WE-A8K5-06 3 7620346 7620346 G A GRM7 Missense_Mutation p.E585K 0.37 tolerated(0.15) probably_damaging(0.986) TCGA-WE-A8K5-06 3 9786103 9786103 C T BRPF1 Missense_Mutation p.S944F 0.30 deleterious(0.01) benign(0.367) TCGA-WE-A8K5-06 3 97983860 97983860 G A OR5H6 Silent p.K244K 0.44 TCGA-WE-A8K5-06 3 98109996 98109996 C T OR5K3 Silent p.L163L 0.36 TCGA-WE-A8K5-06 3 99567893 99567893 C T FILIP1L Missense_Mutation p.G876E 0.32 deleterious(0.03) probably_damaging(0.909) TCGA-WE-A8K5-06 4 101344515 101344515 T A EMCN Missense_Mutation p.L154F 0.46 tolerated(0.16) benign(0.312) TCGA-WE-A8K5-06 4 103968291 103968291 G A SLC9B2 Missense_Mutation p.T269I 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 4 108552848 108552848 G A PAPSS1 Missense_Mutation p.P559S 0.35 tolerated(0.11) probably_damaging(1) TCGA-WE-A8K5-06 4 109773432 109773432 G A COL25A1 Missense_Mutation p.P450L 0.38 tolerated(0.25) benign(0.345) TCGA-WE-A8K5-06 4 110670732 110670732 G A CFI Missense_Mutation p.P323S 0.32 deleterious(0.01) benign(0.325) TCGA-WE-A8K5-06 4 113107951 113107951 G A C4orf32 Missense_Mutation p.G86S 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 4 113352146 113352146 G A ALPK1 Silent p.Q481Q 0.39 TCGA-WE-A8K5-06 4 113353191 113353191 C T ALPK1 Missense_Mutation p.P830S 0.42 tolerated(0.53) benign(0) TCGA-WE-A8K5-06 4 115760697 115760697 C T NDST4 Missense_Mutation p.R708Q 0.44 deleterious(0.04) probably_damaging(0.97) TCGA-WE-A8K5-06 4 120085502 120085502 C T MYOZ2 Silent p.F171F 0.27 TCGA-WE-A8K5-06 4 120085549 120085549 G A MYOZ2 Missense_Mutation p.R187K 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-WE-A8K5-06 4 122053801 122053801 C T TNIP3 3'UTR 0.42 TCGA-WE-A8K5-06 4 123333775 123333775 G A ADAD1 Missense_Mutation p.E354K 0.40 tolerated(0.1) benign(0.386) TCGA-WE-A8K5-06 4 126369651 126369651 G A FAT4 Missense_Mutation p.D2494N 0.44 probably_damaging(1) TCGA-WE-A8K5-06 4 126369711 126369711 C T FAT4 Missense_Mutation p.H2514Y 0.33 benign(0.428) TCGA-WE-A8K5-06 4 126373112 126373112 C T FAT4 Silent p.F3647F 0.36 TCGA-WE-A8K5-06 4 126373627 126373627 G A FAT4 Missense_Mutation p.R3819Q 0.43 possibly_damaging(0.796) TCGA-WE-A8K5-06 4 134073855 134073855 G A PCDH10 Missense_Mutation p.G854R 0.36 tolerated(0.16) benign(0.332) TCGA-WE-A8K5-06 4 138451899 138451899 C T PCDH18 Silent p.V448V 0.39 TCGA-WE-A8K5-06 4 141622690 141622690 G A TBC1D9 Missense_Mutation p.P70L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K5-06 4 142649090 142649090 C T IL15 Intron 0.45 TCGA-WE-A8K5-06 4 155720594 155720594 T G RBM46 Missense_Mutation p.V427G 0.08 deleterious(0) benign(0.068) TCGA-WE-A8K5-06 4 156294566 156294566 G A MAP9 Missense_Mutation p.S68L 0.51 tolerated(0.13) benign(0.003) TCGA-WE-A8K5-06 4 156651206 156651206 C T GUCY1A3 Silent p.F632F 0.61 TCGA-WE-A8K5-06 4 156825246 156825246 G A TDO2 Missense_Mutation p.G38R 0.53 tolerated(0.08) probably_damaging(0.986) TCGA-WE-A8K5-06 4 162459414 162459414 C T FSTL5 Missense_Mutation p.E406K 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-WE-A8K5-06 4 165962062 165962062 C T TRIM60 Missense_Mutation p.P280S 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-WE-A8K5-06 4 166385652 166385652 G A CPE Missense_Mutation p.E140K 0.14 tolerated(0.22) benign(0.024) TCGA-WE-A8K5-06 4 167020554 167020554 C T TLL1 Nonsense_Mutation p.R928* 0.51 TCGA-WE-A8K5-06 4 173961179 173961179 G A GALNTL6 Silent p.E578E 0.53 TCGA-WE-A8K5-06 4 175897818 175897818 G A ADAM29 Missense_Mutation p.R381K 0.54 tolerated(0.65) benign(0.004) TCGA-WE-A8K5-06 4 177105851 177105851 C T SPATA4 3'UTR 0.58 TCGA-WE-A8K5-06 4 1801504 1801504 G A FGFR3 Missense_Mutation p.G137E 0.35 tolerated(0.5) benign(0.007) TCGA-WE-A8K5-06 4 183600989 183600989 G A TENM3 Silent p.G499G 0.50 TCGA-WE-A8K5-06 4 183603168 183603168 G A TENM3 Splice_Site p.X679_splice 0.65 TCGA-WE-A8K5-06 4 183714413 183714413 C T TENM3 Silent p.F2196F 0.72 TCGA-WE-A8K5-06 4 187004941 187004941 C T TLR3 Missense_Mutation p.P701S 0.48 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 4 190876206 190876206 C T FRG1 Missense_Mutation p.S111F 0.31 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K5-06 4 1953928 1953928 G A WHSC1 Missense_Mutation p.G703R 0.28 deleterious(0.02) possibly_damaging(0.564) TCGA-WE-A8K5-06 4 2306814 2306814 G A ZFYVE28 Missense_Mutation p.S418F 0.48 deleterious_low_confidence(0.03) benign(0.418) TCGA-WE-A8K5-06 4 25780777 25780777 C T SEL1L3 Missense_Mutation p.E836K 0.37 deleterious(0.03) probably_damaging(0.955) TCGA-WE-A8K5-06 4 25821527 25821527 T C SEL1L3 Silent p.E442E 0.29 TCGA-WE-A8K5-06 4 39482740 39482740 C T LIAS 3'Flank 0.42 TCGA-WE-A8K5-06 4 40351124 40351124 C T CHRNA9 Silent p.F197F 0.34 TCGA-WE-A8K5-06 4 46043062 46043062 G A GABRG1 Silent p.F447F 0.30 TCGA-WE-A8K5-06 4 46125887 46125887 C T GABRG1 Missense_Mutation p.R15Q 0.36 tolerated_low_confidence(0.34) benign(0.004) TCGA-WE-A8K5-06 4 46252549 46252549 G A GABRA2 Missense_Mutation p.L378F 0.37 tolerated(0.29) benign(0.012) TCGA-WE-A8K5-06 4 46264094 46264094 G A GABRA2 Missense_Mutation p.S303F 0.33 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K5-06 4 47765421 47765421 C A CORIN Nonsense_Mutation p.E198* 0.29 TCGA-WE-A8K5-06 4 55955035 55955035 C T KDR Silent p.Q1170Q 0.42 TCGA-WE-A8K5-06 4 59422 59422 G A ZNF595 Missense_Mutation p.E35K 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.672) TCGA-WE-A8K5-06 4 6107392 6107392 G A JAKMIP1 Silent p.F144F 0.20 TCGA-WE-A8K5-06 4 62758583 62758583 G A LPHN3 Missense_Mutation p.E496K 0.56 tolerated(0.36) possibly_damaging(0.755) TCGA-WE-A8K5-06 4 62800671 62800671 G A LPHN3 Silent p.E674E 0.34 TCGA-WE-A8K5-06 4 62845487 62845487 A G LPHN3 Silent p.Q936Q 0.32 TCGA-WE-A8K5-06 4 6474046 6474046 C T PPP2R2C 5'UTR 0.46 TCGA-WE-A8K5-06 4 647861 647861 C T PDE6B Intron 0.39 TCGA-WE-A8K5-06 4 6864169 6864169 G C KIAA0232 Missense_Mutation p.R687T 0.05 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 4 69416419 69416419 A G UGT2B17 Missense_Mutation p.L430S 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 4 70146275 70146275 C T UGT2B28 Silent p.S19S 0.37 TCGA-WE-A8K5-06 4 70146547 70146547 C T UGT2B28 Missense_Mutation p.S110L 0.46 tolerated(0.72) benign(0.02) TCGA-WE-A8K5-06 4 70346364 70346364 C T UGT2B4 Silent p.G525G 0.32 TCGA-WE-A8K5-06 4 70504849 70504849 C T UGT2A2 Silent p.L170L 0.34 TCGA-WE-A8K5-06 4 71346569 71346569 C T MUC7 Silent p.H36H 0.37 TCGA-WE-A8K5-06 4 71472212 71472212 G A AMBN Missense_Mutation p.G370E 0.43 deleterious(0.02) probably_damaging(0.976) TCGA-WE-A8K5-06 4 73923788 73923788 G A COX18 3'UTR 0.36 TCGA-WE-A8K5-06 4 75938329 75938329 C T PARM1 Silent p.I246I 0.23 TCGA-WE-A8K5-06 4 77324378 77324378 C T CCDC158 5'UTR 0.41 TCGA-WE-A8K5-06 4 77662962 77662962 G A SHROOM3 Nonsense_Mutation p.W1212* 0.33 TCGA-WE-A8K5-06 4 7985060 7985060 A C ABLIM2 Nonsense_Mutation p.Y585* 0.35 TCGA-WE-A8K5-06 4 8230200 8230200 C T SH3TC1 Silent p.L927L 0.28 TCGA-WE-A8K5-06 4 88959600 88959600 C T PKD2 Silent p.V347V 0.32 TCGA-WE-A8K5-06 4 94436502 94436502 G A GRID2 Missense_Mutation p.M711I 0.36 tolerated(0.34) benign(0.429) TCGA-WE-A8K5-06 4 9784720 9784720 C T DRD5 Missense_Mutation p.P356L 0.51 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 5 10411452 10411452 C T MARCH6 Missense_Mutation p.H567Y 0.28 deleterious(0.01) possibly_damaging(0.806) TCGA-WE-A8K5-06 5 110427937 110427937 C T WDR36 5'UTR 0.38 TCGA-WE-A8K5-06 5 110835804 110835804 C T STARD4 Missense_Mutation p.G133E 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8K5-06 5 120022260 120022260 C T PRR16 Silent p.L234L 0.34 TCGA-WE-A8K5-06 5 121726803 121726803 C T SNCAIP 5'UTR 0.34 TCGA-WE-A8K5-06 5 126732235 126732235 G A MEGF10 Missense_Mutation p.D142N 0.38 tolerated(0.16) benign(0.005) TCGA-WE-A8K5-06 5 127872112 127872112 C T FBN2 Missense_Mutation p.G107E 0.25 deleterious(0.01) unknown(0) TCGA-WE-A8K5-06 5 128359403 128359403 G A SLC27A6 Missense_Mutation p.G419R 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-WE-A8K5-06 5 128362849 128362849 C T SLC27A6 Nonsense_Mutation p.R427* 0.33 TCGA-WE-A8K5-06 5 128364048 128364048 G A SLC27A6 Missense_Mutation p.E489K 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 5 13769122 13769122 C T DNAH5 Missense_Mutation p.E3282K 0.37 possibly_damaging(0.621) TCGA-WE-A8K5-06 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.34 TCGA-WE-A8K5-06 5 13776642 13776642 C T DNAH5 Silent p.E3093E 0.35 TCGA-WE-A8K5-06 5 137781246 137781246 C T REEP2 Missense_Mutation p.P217S 0.32 tolerated(0.75) possibly_damaging(0.543) TCGA-WE-A8K5-06 5 13780976 13780976 G A DNAH5 Silent p.F2971F 0.50 TCGA-WE-A8K5-06 5 13824437 13824437 A T DNAH5 Missense_Mutation p.H2150Q 0.36 possibly_damaging(0.537) TCGA-WE-A8K5-06 5 139244609 139244609 C T NRG2 Intron 0.36 TCGA-WE-A8K5-06 5 139251379 139251379 C T NRG2 Missense_Mutation p.E347K 0.46 tolerated(0.05) possibly_damaging(0.707) TCGA-WE-A8K5-06 5 139947789 139947789 C T SLC35A4 3'UTR 0.15 TCGA-WE-A8K5-06 5 140180821 140180821 C T PCDHA3 Silent p.C13C 0.32 TCGA-WE-A8K5-06 5 140201924 140201924 G A PCDHA5 Silent p.T188T 0.42 TCGA-WE-A8K5-06 5 140207977 140207977 G A PCDHA6 Missense_Mutation p.E101K 0.27 tolerated_low_confidence(0.11) benign(0.403) TCGA-WE-A8K5-06 5 140256470 140256470 C T PCDHA12 Silent p.G471G 0.32 TCGA-WE-A8K5-06 5 140431731 140431731 G A PCDHB1 Missense_Mutation p.A226T 0.43 tolerated(0.39) possibly_damaging(0.866) TCGA-WE-A8K5-06 5 140475133 140475133 C T PCDHB2 Silent p.I253I 0.46 TCGA-WE-A8K5-06 5 140530881 140530881 C T PCDHB6 Missense_Mutation p.S348L 0.39 deleterious_low_confidence(0.01) benign(0.042) TCGA-WE-A8K5-06 5 140553643 140553643 G A PCDHB7 Silent p.L409L 0.41 TCGA-WE-A8K5-06 5 140564494 140564494 C T PCDHB16 3'UTR 0.40 TCGA-WE-A8K5-06 5 140580591 140580591 C T PCDHB11 Missense_Mutation p.A415V 0.43 deleterious_low_confidence(0.01) benign(0.271) TCGA-WE-A8K5-06 5 140595178 140595178 G A PCDHB13 Missense_Mutation p.D495N 0.38 deleterious_low_confidence(0.05) benign(0.194) TCGA-WE-A8K5-06 5 140604340 140604340 C G PCDHB14 Missense_Mutation p.I421M 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-WE-A8K5-06 5 140605384 140605384 G A PCDHB14 Silent p.P769P 0.44 TCGA-WE-A8K5-06 5 140712294 140712294 C T PCDHGA1 Silent p.S681S 0.43 TCGA-WE-A8K5-06 5 140720668 140720668 G C PCDHGA2 Silent p.V710V 0.21 TCGA-WE-A8K5-06 5 140784034 140784034 C T PCDHGA9 Silent p.V505V 0.29 TCGA-WE-A8K5-06 5 141243360 141243360 G A PCDH1 Missense_Mutation p.R846C 0.37 tolerated(0.17) probably_damaging(0.911) TCGA-WE-A8K5-06 5 145239359 145239359 C T GRXCR2 Silent p.R228R 0.39 TCGA-WE-A8K5-06 5 145609427 145609427 C T RBM27 Silent p.S181S 0.37 TCGA-WE-A8K5-06 5 149505123 149505123 G A PDGFRB Silent p.I564I 0.30 TCGA-WE-A8K5-06 5 150071402 150071402 G A RBM22 Missense_Mutation p.P392S 0.46 tolerated(0.56) benign(0.014) TCGA-WE-A8K5-06 5 150090716 150090716 G A DCTN4 Missense_Mutation p.P467S 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8K5-06 5 150275629 150275629 G A ZNF300 Missense_Mutation p.S407F 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-WE-A8K5-06 5 150715013 150715013 G A SLC36A2 Silent p.S207S 0.39 TCGA-WE-A8K5-06 5 154394398 154394398 C T KIF4B Missense_Mutation p.L327F 0.43 deleterious(0.01) benign(0.405) TCGA-WE-A8K5-06 5 156638340 156638340 C T ITK Missense_Mutation p.R96C 0.45 deleterious(0.02) benign(0.001) TCGA-WE-A8K5-06 5 156746871 156746871 C T CYFIP2 Silent p.F460F 0.44 TCGA-WE-A8K5-06 5 156899960 156899960 C T NIPAL4 Missense_Mutation p.H465Y 0.46 tolerated_low_confidence(0.29) benign(0.002) TCGA-WE-A8K5-06 5 15936868 15936868 C T FBXL7 Missense_Mutation p.S350F 0.39 tolerated(0.21) benign(0.096) TCGA-WE-A8K5-06 5 159492000 159492000 C T TTC1 Silent p.F269F 0.33 TCGA-WE-A8K5-06 5 167626914 167626914 C T TENM2 Missense_Mutation p.R1070C 0.41 tolerated(0.24) benign(0) TCGA-WE-A8K5-06 5 175528100 175528100 G A FAM153B Missense_Mutation p.E128K 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-WE-A8K5-06 5 175795967 175795967 C T ARL10 Silent p.V181V 0.51 TCGA-WE-A8K5-06 5 178419010 178419010 C T GRM6 Silent p.V193V 0.38 TCGA-WE-A8K5-06 5 179201885 179201885 G A MAML1 3'UTR 0.41 TCGA-WE-A8K5-06 5 179301901 179301901 C T TBC1D9B Splice_Site p.X729_splice 0.55 TCGA-WE-A8K5-06 5 205331 205331 G A CCDC127 3'UTR 0.38 TCGA-WE-A8K5-06 5 35727833 35727833 G A SPEF2 Missense_Mutation p.D991N 0.43 tolerated(0.3) benign(0.086) TCGA-WE-A8K5-06 5 35800103 35800103 G A SPEF2 Missense_Mutation p.D1622N 0.40 tolerated(0.15) benign(0.003) TCGA-WE-A8K5-06 5 35955818 35955818 G A UGT3A1 Silent p.V408V 0.41 TCGA-WE-A8K5-06 5 38485927 38485927 C T LIFR Missense_Mutation p.E831K 0.41 deleterious(0.01) probably_damaging(0.972) TCGA-WE-A8K5-06 5 38919147 38919147 C T OSMR Missense_Mutation p.S523F 0.46 deleterious(0) probably_damaging(0.935) TCGA-WE-A8K5-06 5 40945442 40945442 C T C7 Missense_Mutation p.S237L 0.33 tolerated(0.22) benign(0.152) TCGA-WE-A8K5-06 5 40979859 40979859 G A C7 Missense_Mutation p.R733K 0.56 tolerated(0.19) benign(0.003) TCGA-WE-A8K5-06 5 41149355 41149355 C T C6 Missense_Mutation p.E871K 0.33 deleterious(0) probably_damaging(0.983) TCGA-WE-A8K5-06 5 41161958 41161958 G A C6 Missense_Mutation p.S432L 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 5 43659418 43659418 C T NNT Missense_Mutation p.S867L 0.36 tolerated(0.21) probably_damaging(0.999) TCGA-WE-A8K5-06 5 52779431 52779431 C T FST Silent p.I125I 0.36 TCGA-WE-A8K5-06 5 54459915 54459915 T C GPX8 Missense_Mutation p.W167R 0.37 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 5 57790677 57790677 G A GAPT Missense_Mutation p.G105E 0.49 tolerated(1) benign(0) TCGA-WE-A8K5-06 5 63802507 63802507 C T RGS7BP Missense_Mutation p.S19L 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-WE-A8K5-06 5 64920825 64920825 C T CTC-534A2.2 5'UTR 0.45 TCGA-WE-A8K5-06 5 65350162 65350162 C T ERBB2IP Missense_Mutation p.P1006S 0.32 deleterious(0.03) benign(0.021) TCGA-WE-A8K5-06 5 6600343 6600343 T C NSUN2 Missense_Mutation p.N667S 0.48 tolerated(0.25) benign(0.004) TCGA-WE-A8K5-06 5 6609962 6609962 G A NSUN2 Missense_Mutation p.P434S 0.39 deleterious(0.04) probably_damaging(0.987) TCGA-WE-A8K5-06 5 66478861 66478861 C T CD180 Missense_Mutation p.E604K 0.37 tolerated(0.56) benign(0.006) TCGA-WE-A8K5-06 5 75913330 75913330 C T F2RL2 3'UTR 0.36 TCGA-WE-A8K5-06 5 79026848 79026848 C T CMYA5 Missense_Mutation p.L754F 0.32 probably_damaging(0.986) TCGA-WE-A8K5-06 5 83356276 83356276 G A EDIL3 Missense_Mutation p.S327L 0.34 tolerated(0.05) benign(0.114) TCGA-WE-A8K5-06 5 94208946 94208946 C T MCTP1 Missense_Mutation p.G645E 0.35 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 5 94863731 94863731 G A TTC37 Missense_Mutation p.R374C 0.32 tolerated(0.13) benign(0.001) TCGA-WE-A8K5-06 6 102307177 102307177 C T GRIK2 Missense_Mutation p.L445F 0.25 deleterious(0) benign(0.405) TCGA-WE-A8K5-06 6 105406088 105406088 G A LIN28B Missense_Mutation p.G42E 0.31 deleterious(0) probably_damaging(0.993) TCGA-WE-A8K5-06 6 106536166 106536166 G A PRDM1 Missense_Mutation p.D45N 0.36 deleterious(0) probably_damaging(0.959) TCGA-WE-A8K5-06 6 107956647 107956647 C A SOBP Silent p.R867R 0.35 TCGA-WE-A8K5-06 6 108042050 108042050 C T SCML4 Missense_Mutation p.S277N 0.45 tolerated(0.33) benign(0.049) TCGA-WE-A8K5-06 6 10995346 10995346 G A ELOVL2 Silent p.F133F 0.20 TCGA-WE-A8K5-06 6 117127829 117127829 G A GPRC6A Missense_Mutation p.P347S 0.37 tolerated(0.17) benign(0.159) TCGA-WE-A8K5-06 6 117248198 117248198 G A RFX6 Missense_Mutation p.E632K 0.49 deleterious_low_confidence(0.02) benign(0.066) TCGA-WE-A8K5-06 6 117249966 117249966 G A RFX6 Missense_Mutation p.G815R 0.39 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-WE-A8K5-06 6 12122595 12122595 C T HIVEP1 Missense_Mutation p.P856L 0.22 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 6 121625524 121625524 G A TBC1D32 Missense_Mutation p.R308C 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 6 127796913 127796913 G A SOGA3 Missense_Mutation p.A753V 0.32 deleterious(0.02) possibly_damaging(0.593) TCGA-WE-A8K5-06 6 128150642 128150642 C T THEMIS Missense_Mutation p.E230K 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-WE-A8K5-06 6 129963063 129963063 C T ARHGAP18 Missense_Mutation p.E72K 0.33 tolerated(0.06) benign(0.211) TCGA-WE-A8K5-06 6 130152480 130152480 G A TMEM244 Missense_Mutation p.S124L 0.27 tolerated(0.46) benign(0) TCGA-WE-A8K5-06 6 130497110 130497110 C T SAMD3 Missense_Mutation p.R233Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 6 142726900 142726900 C A GPR126 Missense_Mutation p.P735T 0.47 tolerated(0.57) benign(0.053) TCGA-WE-A8K5-06 6 152443611 152443611 T G SYNE1 Missense_Mutation p.H8785P 0.38 probably_damaging(0.998) TCGA-WE-A8K5-06 6 158449954 158449954 G A SYNJ2 Silent p.G127G 0.42 TCGA-WE-A8K5-06 6 161087356 161087356 C T LPA 5'UTR 0.41 TCGA-WE-A8K5-06 6 1624325 1624325 C T GMDS 3'UTR 0.23 TCGA-WE-A8K5-06 6 17541363 17541363 G A CAP2 Missense_Mutation p.G329E 0.21 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K5-06 6 28402538 28402538 G A ZSCAN23 Silent p.L292L 0.22 TCGA-WE-A8K5-06 6 28402580 28402580 C T ZSCAN23 Missense_Mutation p.E278K 0.17 tolerated(0.37) possibly_damaging(0.6) TCGA-WE-A8K5-06 6 28473486 28473486 G A GPX6 Silent p.F151F 0.19 TCGA-WE-A8K5-06 6 28543807 28543807 C T SCAND3 Silent p.K225K 0.25 TCGA-WE-A8K5-06 6 29054268 29054268 C T OR2B3 Missense_Mutation p.G253E 0.20 deleterious(0) probably_damaging(0.995) TCGA-WE-A8K5-06 6 29080526 29080526 A G OR2J3 Missense_Mutation p.S287G 0.07 tolerated(0.11) possibly_damaging(0.823) TCGA-WE-A8K5-06 6 30862438 30862438 C T DDR1 Silent p.P501P 0.21 TCGA-WE-A8K5-06 6 30954878 30954878 C T MUC21 Missense_Mutation p.S309F 0.12 deleterious(0.01) unknown(0) TCGA-WE-A8K5-06 6 31431420 31431420 C G HCP5 RNA 0.20 TCGA-WE-A8K5-06 6 31639886 31639886 C T CSNK2B-LY6G5B-1181 3'UTR 0.19 TCGA-WE-A8K5-06 6 31926915 31926915 C T SKIV2L 5'UTR 0.43 TCGA-WE-A8K5-06 6 32047104 32047104 C T RNA5SP206 5'Flank 0.40 TCGA-WE-A8K5-06 6 32047122 32047122 C T RNA5SP206 5'Flank 0.38 TCGA-WE-A8K5-06 6 32093979 32093979 G A ATF6B Silent p.P131P 0.50 TCGA-WE-A8K5-06 6 33239417 33239417 C T VPS52 Silent p.R12R 0.39 TCGA-WE-A8K5-06 6 37467628 37467628 C T CCDC167 Silent p.K4K 0.39 TCGA-WE-A8K5-06 6 38890900 38890900 C T DNAH8 Silent p.L3360L 0.40 TCGA-WE-A8K5-06 6 38950129 38950129 G A DNAH8 Missense_Mutation p.R4064Q 0.38 probably_damaging(0.964) TCGA-WE-A8K5-06 6 39847120 39847120 C T DAAM2 Missense_Mutation p.A571V 0.42 tolerated(0.14) benign(0.046) TCGA-WE-A8K5-06 6 42162373 42162373 G A GUCA1B Silent p.F62F 0.29 TCGA-WE-A8K5-06 6 43022060 43022060 G A MRPL2 Silent p.P290P 0.40 TCGA-WE-A8K5-06 6 43306049 43306049 G A ZNF318 Missense_Mutation p.S1896F 0.37 possibly_damaging(0.467) TCGA-WE-A8K5-06 6 46107753 46107753 G A ENPP4 Missense_Mutation p.D145N 0.33 tolerated(1) benign(0.001) TCGA-WE-A8K5-06 6 46803167 46803167 G A MEP1A Silent p.V655V 0.30 TCGA-WE-A8K5-06 6 46827024 46827024 G A GPR116 Silent p.F872F 0.42 TCGA-WE-A8K5-06 6 46977516 46977516 A T GPR110 Missense_Mutation p.V552E 0.47 tolerated(0.29) benign(0.166) TCGA-WE-A8K5-06 6 46977517 46977517 C T GPR110 Missense_Mutation p.V552M 0.46 tolerated(0.14) possibly_damaging(0.519) TCGA-WE-A8K5-06 6 49582540 49582540 G A RHAG Missense_Mutation p.P223S 0.33 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 6 49754616 49754616 G A PGK2 Silent p.F95F 0.37 TCGA-WE-A8K5-06 6 49986807 49986807 C T DEFB110 Silent p.L29L 0.43 TCGA-WE-A8K5-06 6 52367860 52367860 C T TRAM2 3'UTR 0.42 TCGA-WE-A8K5-06 6 52615419 52615419 C T GSTA2 Missense_Mutation p.D209N 0.38 deleterious(0.05) benign(0.004) TCGA-WE-A8K5-06 6 53010471 53010471 C T GCM1 5'UTR 0.44 TCGA-WE-A8K5-06 6 54066940 54066940 C T MLIP Missense_Mutation p.S341F 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-WE-A8K5-06 6 54254807 54254807 G A TINAG 3'UTR 0.33 TCGA-WE-A8K5-06 6 54805312 54805312 G A FAM83B Missense_Mutation p.A515T 0.38 tolerated(0.35) benign(0.004) TCGA-WE-A8K5-06 6 54805858 54805858 G A FAM83B Missense_Mutation p.E697K 0.36 tolerated(0.53) benign(0.118) TCGA-WE-A8K5-06 6 55214904 55214904 G A GFRAL Missense_Mutation p.D111N 0.31 tolerated(0.32) benign(0.015) TCGA-WE-A8K5-06 6 55924949 55924949 G A COL21A1 Silent p.G825G 0.37 TCGA-WE-A8K5-06 6 55990409 55990409 C T COL21A1 Missense_Mutation p.G536S 0.19 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K5-06 6 56365928 56365928 G A DST Missense_Mutation p.P3993S 0.34 benign(0.09) TCGA-WE-A8K5-06 6 70873266 70873266 C T COL19A1 Missense_Mutation p.P793L 0.42 tolerated(0.34) probably_damaging(0.986) TCGA-WE-A8K5-06 6 72011195 72011195 C T OGFRL1 Missense_Mutation p.L267F 0.35 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K5-06 6 73904457 73904457 C T KCNQ5 Missense_Mutation p.P726S 0.38 tolerated(0.23) probably_damaging(0.998) TCGA-WE-A8K5-06 6 79944227 79944227 T C HMGN3 Intron 0.39 TCGA-WE-A8K5-06 6 84300970 84300970 C T SNAP91 Silent p.Q658Q 0.27 TCGA-WE-A8K5-06 6 87725039 87725039 G A HTR1E 5'UTR 0.45 TCGA-WE-A8K5-06 6 93956696 93956696 T A EPHA7 Missense_Mutation p.K847I 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-WE-A8K5-06 6 96652049 96652049 C T FUT9 Missense_Mutation p.H340Y 0.38 tolerated(1) benign(0.08) TCGA-WE-A8K5-06 7 100348420 100348420 G A ZAN Silent p.G474G 0.27 TCGA-WE-A8K5-06 7 100350662 100350662 C T ZAN Silent p.I978I 0.27 TCGA-WE-A8K5-06 7 100607889 100607889 C T MUC3A Missense_Mutation p.S679F 0.13 tolerated(0.06) possibly_damaging(0.887) TCGA-WE-A8K5-06 7 100695081 100695081 C T MUC17 Intron 0.29 TCGA-WE-A8K5-06 7 101200655 101200655 C T COL26A1 Silent p.P390P 0.52 TCGA-WE-A8K5-06 7 1026388 1026388 G A CYP2W1 Silent p.G258G 0.57 TCGA-WE-A8K5-06 7 103124141 103124141 C T RELN Silent p.K3380K 0.56 TCGA-WE-A8K5-06 7 106826320 106826320 C T HBP1 Missense_Mutation p.S158F 0.27 deleterious(0.02) possibly_damaging(0.467) TCGA-WE-A8K5-06 7 111409644 111409644 C T DOCK4 Missense_Mutation p.E1248K 0.59 deleterious(0) benign(0.437) TCGA-WE-A8K5-06 7 111629148 111629148 A C DOCK4 Missense_Mutation p.V129G 0.47 deleterious(0) benign(0.266) TCGA-WE-A8K5-06 7 113518022 113518022 C T PPP1R3A Missense_Mutation p.G1042D 0.52 tolerated(0.31) benign(0.009) TCGA-WE-A8K5-06 7 113519545 113519545 G A PPP1R3A Silent p.F534F 0.36 TCGA-WE-A8K5-06 7 113558646 113558646 G A PPP1R3A Missense_Mutation p.L136F 0.55 tolerated(0.1) benign(0.208) TCGA-WE-A8K5-06 7 116859158 116859158 C T ST7 Missense_Mutation p.P476S 0.31 deleterious(0.02) benign(0.078) TCGA-WE-A8K5-06 7 117175303 117175303 G A CFTR Missense_Mutation p.G194E 0.53 deleterious(0.04) possibly_damaging(0.887) TCGA-WE-A8K5-06 7 121691948 121691948 C T PTPRZ1 Silent p.S2069S 0.37 TCGA-WE-A8K5-06 7 123517064 123517064 C T HYAL4 Missense_Mutation p.S434F 0.38 tolerated(0.71) benign(0.003) TCGA-WE-A8K5-06 7 124387152 124387152 G A GPR37 Silent p.I423I 0.07 TCGA-WE-A8K5-06 7 127729577 127729577 C T SND1 Missense_Mutation p.R819W 0.24 deleterious(0.01) possibly_damaging(0.743) TCGA-WE-A8K5-06 7 128040550 128040550 G A IMPDH1 Missense_Mutation p.P208L 0.17 deleterious(0.01) benign(0.25) TCGA-WE-A8K5-06 7 128480704 128480704 G A FLNC Nonsense_Mutation p.W551* 0.25 TCGA-WE-A8K5-06 7 128498497 128498497 G A FLNC Missense_Mutation p.E2700K 0.26 tolerated(0.1) possibly_damaging(0.734) TCGA-WE-A8K5-06 7 129770571 129770571 C T KLHDC10 Silent p.I438I 0.35 TCGA-WE-A8K5-06 7 130022033 130022033 C T CPA1 Missense_Mutation p.P156S 0.19 tolerated(0.34) benign(0.167) TCGA-WE-A8K5-06 7 134261101 134261101 G A AKR1B15 Nonsense_Mutation p.W248* 0.35 TCGA-WE-A8K5-06 7 134618275 134618275 C T CALD1 Missense_Mutation p.S252F 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-WE-A8K5-06 7 135301435 135301435 T G NUP205 Missense_Mutation p.S1165A 0.39 tolerated(0.07) possibly_damaging(0.626) TCGA-WE-A8K5-06 7 135614697 135614697 C G MTPN Missense_Mutation p.A112P 0.09 tolerated(0.11) benign(0) TCGA-WE-A8K5-06 7 136912800 136912800 C T PTN Silent p.K158K 0.19 TCGA-WE-A8K5-06 7 138400582 138400582 G A ATP6V0A4 Silent p.I728I 0.35 TCGA-WE-A8K5-06 7 139164391 139164391 G A KLRG2 Silent p.P329P 0.18 TCGA-WE-A8K5-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-WE-A8K5-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.40 deleterious(0) possibly_damaging(0.838) TCGA-WE-A8K5-06 7 141635651 141635651 C T CLEC5A Missense_Mutation p.G103E 0.24 tolerated(0.15) benign(0.231) TCGA-WE-A8K5-06 7 141705447 141705447 G A MGAM Silent p.L39L 0.33 TCGA-WE-A8K5-06 7 141708330 141708330 C T MGAM Missense_Mutation p.T51I 0.17 tolerated(0.18) benign(0) TCGA-WE-A8K5-06 7 141736669 141736669 C T MGAM Missense_Mutation p.S708F 0.24 deleterious(0) probably_damaging(0.989) TCGA-WE-A8K5-06 7 141770823 141770823 G A MGAM Intron 0.44 TCGA-WE-A8K5-06 7 142168910 142168910 G A TRBV5-4 5'UTR 0.32 TCGA-WE-A8K5-06 7 142247188 142247188 C T TRBV7-3 Missense_Mutation p.E90K 0.19 TCGA-WE-A8K5-06 7 142364595 142364595 G A TRBV24-1 Missense_Mutation p.G77E 0.19 deleterious(0.03) probably_damaging(0.942) TCGA-WE-A8K5-06 7 142495160 142495160 G A TRBJ2-7 Missense_Mutation p.G8E 0.31 unknown(0) TCGA-WE-A8K5-06 7 142606682 142606682 G A TRPV5 Silent p.F623F 0.32 TCGA-WE-A8K5-06 7 142630608 142630608 G A TRPV5 5'UTR 0.19 TCGA-WE-A8K5-06 7 142649678 142649678 G A KEL Missense_Mutation p.S374F 0.21 deleterious(0) probably_damaging(0.936) TCGA-WE-A8K5-06 7 142724187 142724187 G A OR9A2 Silent p.F11F 0.21 TCGA-WE-A8K5-06 7 142749836 142749836 G A OR6V1 Silent p.L133L 0.37 TCGA-WE-A8K5-06 7 142759837 142759837 C T OR6W1P RNA 0.47 TCGA-WE-A8K5-06 7 143417164 143417164 G A FAM115C Missense_Mutation p.A338T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8K5-06 7 143748032 143748032 G A OR2A5 Missense_Mutation p.E180K 0.21 deleterious(0) probably_damaging(0.973) TCGA-WE-A8K5-06 7 143771310 143771310 G A OR2A25 5'UTR 0.16 TCGA-WE-A8K5-06 7 144060789 144060789 G A ARHGEF5 Missense_Mutation p.E343K 0.11 tolerated(0.53) benign(0.001) TCGA-WE-A8K5-06 7 144062281 144062281 C G ARHGEF5 Missense_Mutation p.P840R 0.14 deleterious(0.02) benign(0.263) TCGA-WE-A8K5-06 7 14661082 14661082 G A DGKB Missense_Mutation p.S403F 0.15 deleterious(0.01) benign(0.092) TCGA-WE-A8K5-06 7 148979134 148979134 G A ZNF783 Silent p.Q447Q 0.25 TCGA-WE-A8K5-06 7 149508059 149508059 C T SSPO RNA 0.18 TCGA-WE-A8K5-06 7 150174916 150174916 G A GIMAP8 3'UTR 0.31 TCGA-WE-A8K5-06 7 150325586 150325586 C T GIMAP6 Missense_Mutation p.E34K 0.41 deleterious(0.05) benign(0.035) TCGA-WE-A8K5-06 7 150439831 150439831 G A GIMAP5 Missense_Mutation p.E202K 0.20 tolerated(0.19) benign(0.427) TCGA-WE-A8K5-06 7 150500489 150500489 C T TMEM176A Missense_Mutation p.A96V 0.48 deleterious(0.02) possibly_damaging(0.811) TCGA-WE-A8K5-06 7 150502071 150502071 C T TMEM176A 3'UTR 0.17 TCGA-WE-A8K5-06 7 150738282 150738282 C T ABCB8 Missense_Mutation p.S527F 0.38 deleterious(0.02) benign(0.251) TCGA-WE-A8K5-06 7 150745910 150745910 C T ASIC3 5'Flank 0.38 TCGA-WE-A8K5-06 7 154379654 154379654 C T DPP6 Intron 0.18 TCGA-WE-A8K5-06 7 154862719 154862719 C T HTR5A Missense_Mutation p.S37L 0.19 deleterious(0) benign(0.148) TCGA-WE-A8K5-06 7 157985042 157985042 C T PTPRN2 Missense_Mutation p.A176T 0.26 tolerated(0.59) benign(0.005) TCGA-WE-A8K5-06 7 158448999 158448999 G A NCAPG2 Missense_Mutation p.P781S 0.23 tolerated(0.31) benign(0.211) TCGA-WE-A8K5-06 7 22184701 22184701 C T RAPGEF5 Missense_Mutation p.R563Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 7 27134892 27134892 G A HOXA1 Missense_Mutation p.P214S 0.42 deleterious(0) probably_damaging(0.991) TCGA-WE-A8K5-06 7 2962783 2962783 C T CARD11 Missense_Mutation p.G709S 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-WE-A8K5-06 7 34014352 34014352 G A BMPER Missense_Mutation p.E178K 0.23 tolerated(0.26) benign(0.049) TCGA-WE-A8K5-06 7 35242070 35242070 G A TBX20 Missense_Mutation p.S439F 0.42 deleterious_low_confidence(0.02) benign(0.328) TCGA-WE-A8K5-06 7 36429714 36429714 C T KIAA0895 5'UTR 0.57 TCGA-WE-A8K5-06 7 48269438 48269438 G A ABCA13 Missense_Mutation p.E217K 0.48 possibly_damaging(0.598) TCGA-WE-A8K5-06 7 50450376 50450376 C T IKZF1 Missense_Mutation p.A187V 0.36 deleterious(0.03) probably_damaging(1) TCGA-WE-A8K5-06 7 56136329 56136329 C T SUMF2 Silent p.F93F 0.57 TCGA-WE-A8K5-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.50 TCGA-WE-A8K5-06 7 57188189 57188189 G A ZNF479 Silent p.T311T 0.21 TCGA-WE-A8K5-06 7 5966086 5966086 G A RSPH10B Silent p.S842S 0.15 TCGA-WE-A8K5-06 7 63726801 63726801 G A ZNF679 Missense_Mutation p.G264R 0.43 tolerated(0.07) probably_damaging(1) TCGA-WE-A8K5-06 7 63726956 63726956 G C ZNF679 Missense_Mutation p.K315N 0.47 deleterious(0.03) probably_damaging(0.961) TCGA-WE-A8K5-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.55 deleterious(0) possibly_damaging(0.869) TCGA-WE-A8K5-06 7 65444405 65444405 G A GUSB Silent p.T235T 0.62 TCGA-WE-A8K5-06 7 6662231 6662231 G A ZNF853 Missense_Mutation p.G537S 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8K5-06 7 72658366 72658366 G A GTF2IRD2P1 RNA 0.25 TCGA-WE-A8K5-06 7 72683240 72683240 C T GTF2IRD2P1 RNA 0.35 TCGA-WE-A8K5-06 7 73151971 73151971 G A ABHD11 Missense_Mutation p.P128L 0.41 tolerated(0.2) benign(0.001) TCGA-WE-A8K5-06 7 73646449 73646449 G A RFC2 Missense_Mutation p.P351L 0.25 tolerated_low_confidence(0.11) benign(0.028) TCGA-WE-A8K5-06 7 73646450 73646450 G A RFC2 Missense_Mutation p.P351S 0.25 deleterious_low_confidence(0.01) benign(0.271) TCGA-WE-A8K5-06 7 74211306 74211306 G A GTF2IRD2 Silent p.L849L 0.22 TCGA-WE-A8K5-06 7 77762297 77762297 G T MAGI2 Missense_Mutation p.P1038T 0.25 tolerated(0.08) benign(0.017) TCGA-WE-A8K5-06 7 80293794 80293794 G A CD36 Missense_Mutation p.D228N 0.52 deleterious(0.01) benign(0.036) TCGA-WE-A8K5-06 7 82583307 82583307 C T PCLO Missense_Mutation p.R2321K 0.53 unknown(0) TCGA-WE-A8K5-06 7 82585844 82585844 C T PCLO Silent p.R1475R 0.27 TCGA-WE-A8K5-06 7 82784523 82784523 C T PCLO Silent p.K478K 0.33 TCGA-WE-A8K5-06 7 86394673 86394673 C T GRM3 Missense_Mutation p.A71V 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 7 86539281 86539281 C T KIAA1324L Missense_Mutation p.D736N 0.52 deleterious(0.01) possibly_damaging(0.908) TCGA-WE-A8K5-06 7 89753496 89753496 G A RP5-1121E10.2 5'Flank 0.50 TCGA-WE-A8K5-06 7 91726115 91726115 G C AKAP9 Missense_Mutation p.R3281T 0.13 possibly_damaging(0.818) TCGA-WE-A8K5-06 7 92764333 92764333 C T SAMD9L Missense_Mutation p.D318N 0.57 tolerated(0.4) benign(0.005) TCGA-WE-A8K5-06 7 94040443 94040443 G A COL1A2 Missense_Mutation p.E443K 0.53 probably_damaging(0.993) TCGA-WE-A8K5-06 8 101052197 101052197 C T RGS22 Missense_Mutation p.G686E 0.31 tolerated(0.07) possibly_damaging(0.724) TCGA-WE-A8K5-06 8 101164086 101164086 T G POLR2K Missense_Mutation p.D32E 0.23 tolerated(0.27) possibly_damaging(0.807) TCGA-WE-A8K5-06 8 10677707 10677707 G A PINX1 Missense_Mutation p.P156L 0.29 tolerated(0.24) benign(0.005) TCGA-WE-A8K5-06 8 106815176 106815176 G A ZFPM2 Missense_Mutation p.E956K 0.29 tolerated(0.2) possibly_damaging(0.585) TCGA-WE-A8K5-06 8 10756260 10756260 G A XKR6 Silent p.A376A 0.32 TCGA-WE-A8K5-06 8 110352776 110352776 C T ENY2 Silent p.I71I 0.24 TCGA-WE-A8K5-06 8 110460421 110460421 G A PKHD1L1 Silent p.E1942E 0.46 TCGA-WE-A8K5-06 8 110471834 110471834 G T PKHD1L1 Nonsense_Mutation p.G2339* 0.50 TCGA-WE-A8K5-06 8 110476479 110476479 G A PKHD1L1 Missense_Mutation p.R2473Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 8 110588178 110588178 C G SYBU Missense_Mutation p.E317Q 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-WE-A8K5-06 8 119391684 119391684 G A SAMD12 Missense_Mutation p.S193F 0.55 tolerated_low_confidence(0.89) benign(0.001) TCGA-WE-A8K5-06 8 120435479 120435479 C T NOV 3'UTR 0.81 TCGA-WE-A8K5-06 8 124219751 124219751 G A FAM83A Nonsense_Mutation p.W376* 0.24 TCGA-WE-A8K5-06 8 132052112 132052112 G A ADCY8 Silent p.T156T 0.23 TCGA-WE-A8K5-06 8 133650270 133650270 G A LRRC6 Missense_Mutation p.H114Y 0.58 tolerated(0.07) benign(0.094) TCGA-WE-A8K5-06 8 133879268 133879268 T C TG Missense_Mutation p.F8S 0.63 tolerated(0.28) benign(0.002) TCGA-WE-A8K5-06 8 134034311 134034311 G A TG Missense_Mutation p.D2318N 0.60 deleterious(0) possibly_damaging(0.556) TCGA-WE-A8K5-06 8 139163968 139163968 G A FAM135B Missense_Mutation p.A917V 0.56 tolerated_low_confidence(0.63) benign(0.003) TCGA-WE-A8K5-06 8 139833537 139833537 C T COL22A1 Missense_Mutation p.D363N 0.21 unknown(0) TCGA-WE-A8K5-06 8 142441275 142441275 C T PTP4A3 3'UTR 0.61 TCGA-WE-A8K5-06 8 143921889 143921889 C T GML Silent p.L12L 0.21 TCGA-WE-A8K5-06 8 143958271 143958271 A C CYP11B1 Missense_Mutation p.L209R 0.11 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K5-06 8 14412247 14412247 G A SGCZ Silent p.F76F 0.46 TCGA-WE-A8K5-06 8 14412356 14412356 C T SGCZ Missense_Mutation p.G40E 0.37 deleterious(0) probably_damaging(0.933) TCGA-WE-A8K5-06 8 144297330 144297330 G A GPIHBP1 Silent p.V164V 0.35 TCGA-WE-A8K5-06 8 144654617 144654617 C T MROH6 Missense_Mutation p.E90K 0.21 deleterious(0.03) benign(0.342) TCGA-WE-A8K5-06 8 144801005 144801005 C T MAPK15 Missense_Mutation p.S116F 0.26 tolerated(0.15) benign(0.004) TCGA-WE-A8K5-06 8 144940554 144940554 C T EPPK1 Missense_Mutation p.G2290S 0.07 probably_damaging(0.998) TCGA-WE-A8K5-06 8 144990505 144990505 G A PLEC Missense_Mutation p.T4632I 0.24 unknown(0) TCGA-WE-A8K5-06 8 16012633 16012633 C T MSR1 Missense_Mutation p.E280K 0.30 deleterious(0) possibly_damaging(0.889) TCGA-WE-A8K5-06 8 24775293 24775293 C T NEFM Missense_Mutation p.P642L 0.63 deleterious(0) benign(0.19) TCGA-WE-A8K5-06 8 2796204 2796204 G A CSMD1 Missense_Mutation p.S3533L 0.27 probably_damaging(0.996) TCGA-WE-A8K5-06 8 30706637 30706637 C T TEX15 5'Flank 0.82 TCGA-WE-A8K5-06 8 3081268 3081268 G A CSMD1 Silent p.I1489I 0.36 TCGA-WE-A8K5-06 8 30998943 30998943 C T WRN Intron 0.61 TCGA-WE-A8K5-06 8 3226847 3226847 G A CSMD1 Missense_Mutation p.S943F 0.50 probably_damaging(0.999) TCGA-WE-A8K5-06 8 38277204 38277204 G A FGFR1 Silent p.I408I 0.42 TCGA-WE-A8K5-06 8 39627025 39627025 C T ADAM2 Silent p.Q366Q 0.41 TCGA-WE-A8K5-06 8 39678658 39678658 C T ADAM2 Missense_Mutation p.G126R 0.36 deleterious(0) probably_damaging(0.973) TCGA-WE-A8K5-06 8 43197384 43197384 G A POTEA RNA 0.43 TCGA-WE-A8K5-06 8 52321172 52321172 G A PXDNL Silent p.I1004I 0.35 TCGA-WE-A8K5-06 8 52321427 52321427 G A PXDNL Silent p.L919L 0.36 TCGA-WE-A8K5-06 8 53044521 53044521 C T ST18 Missense_Mutation p.R888Q 0.29 deleterious(0) probably_damaging(0.989) TCGA-WE-A8K5-06 8 53084721 53084721 G A ST18 Missense_Mutation p.P234S 0.38 tolerated(0.08) benign(0.031) TCGA-WE-A8K5-06 8 61735157 61735157 C T CHD7 Missense_Mutation p.P1018L 0.09 probably_damaging(1) TCGA-WE-A8K5-06 8 65508762 65508762 C T CYP7B1 3'UTR 0.40 TCGA-WE-A8K5-06 8 65509340 65509340 T - CYP7B1 Frame_Shift_Del p.K460Nfs*8 0.31 TCGA-WE-A8K5-06 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.36 deleterious(0.01) benign(0.024) TCGA-WE-A8K5-06 8 71068364 71068364 G A NCOA2 Missense_Mutation p.R746C 0.41 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 8 72234082 72234082 G A EYA1 Missense_Mutation p.S102F 0.35 tolerated(0.08) benign(0.369) TCGA-WE-A8K5-06 8 7305464 7305464 C T SPAG11B 3'Flank 0.67 TCGA-WE-A8K5-06 8 7340159 7340159 C T DEFB106B Silent p.R55R 0.21 TCGA-WE-A8K5-06 8 85785530 85785530 G A RALYL Missense_Mutation p.E208K 0.29 deleterious(0.01) benign(0.312) TCGA-WE-A8K5-06 8 86574498 86574498 G A REXO1L1P Missense_Mutation p.S410F 0.19 tolerated(0.18) benign(0.067) TCGA-WE-A8K5-06 8 87588319 87588319 C T CNGB3 Missense_Mutation p.E715K 0.29 tolerated(0.53) benign(0.016) TCGA-WE-A8K5-06 8 87751964 87751964 C T CNGB3 Missense_Mutation p.E44K 0.39 tolerated(0.67) benign(0.038) TCGA-WE-A8K5-06 8 88249265 88249265 C T CNBD1 Silent p.F232F 0.34 TCGA-WE-A8K5-06 8 88885708 88885708 G A DCAF4L2 Silent p.F164F 0.40 TCGA-WE-A8K5-06 8 88885982 88885982 C T DCAF4L2 Missense_Mutation p.R73Q 0.33 tolerated(0.4) benign(0.009) TCGA-WE-A8K5-06 8 96264418 96264418 G A C8orf37 Silent p.F156F 0.31 TCGA-WE-A8K5-06 8 97156938 97156938 C T GDF6 Missense_Mutation p.M407I 0.28 deleterious(0.02) possibly_damaging(0.875) TCGA-WE-A8K5-06 8 97299345 97299345 C T PTDSS1 Nonsense_Mutation p.R138* 0.32 TCGA-WE-A8K5-06 8 98731276 98731276 G A MTDH Splice_Site p.X461_splice 0.24 TCGA-WE-A8K5-06 9 100245199 100245199 C T TDRD7 Silent p.D827D 0.42 TCGA-WE-A8K5-06 9 101340339 101340339 C T GABBR2 Missense_Mutation p.G113R 0.39 deleterious(0) probably_damaging(0.961) TCGA-WE-A8K5-06 9 103947806 103947806 T G LPPR1 Missense_Mutation p.S10R 0.38 deleterious(0) benign(0.015) TCGA-WE-A8K5-06 9 107331595 107331595 C T OR13C8 Silent p.I49I 0.36 TCGA-WE-A8K5-06 9 109736461 109736461 C T ZNF462 Missense_Mutation p.P2247S 0.35 possibly_damaging(0.49) TCGA-WE-A8K5-06 9 116279850 116279850 C G RGS3 Silent p.T568T 0.30 TCGA-WE-A8K5-06 9 117087147 117087147 G A ORM1 Missense_Mutation p.D136N 0.36 deleterious(0.03) benign(0.176) TCGA-WE-A8K5-06 9 119202967 119202967 G A ASTN2 Nonsense_Mutation p.R1184* 0.36 TCGA-WE-A8K5-06 9 121930123 121930123 C T BRINP1 Missense_Mutation p.E509K 0.23 deleterious(0) possibly_damaging(0.905) TCGA-WE-A8K5-06 9 121976098 121976098 G A BRINP1 Intron 0.39 TCGA-WE-A8K5-06 9 121976288 121976288 G T BRINP1 Missense_Mutation p.N277K 0.37 deleterious(0.01) benign(0.077) TCGA-WE-A8K5-06 9 125377892 125377892 G A OR1Q1 Silent p.L292L 0.26 TCGA-WE-A8K5-06 9 125424915 125424915 G A OR1L1 Missense_Mutation p.M307I 0.45 tolerated(0.61) benign(0) TCGA-WE-A8K5-06 9 125486849 125486849 C T OR1L4 Missense_Mutation p.S194F 0.29 tolerated(0.96) probably_damaging(0.962) TCGA-WE-A8K5-06 9 125681715 125681715 G A ZBTB26 Missense_Mutation p.H167Y 0.39 deleterious(0.04) benign(0.044) TCGA-WE-A8K5-06 9 125797129 125797129 C T GPR21 Missense_Mutation p.P95L 0.39 tolerated(0.49) benign(0.039) TCGA-WE-A8K5-06 9 129958798 129958798 C T RALGPS1 Silent p.F361F 0.43 TCGA-WE-A8K5-06 9 130479278 130479278 C T TTC16 Silent p.P58P 0.43 TCGA-WE-A8K5-06 9 130493304 130493304 G A TTC16 Missense_Mutation p.E748K 0.41 tolerated(1) benign(0) TCGA-WE-A8K5-06 9 130652996 130652996 G A ST6GALNAC6 Silent p.P208P 0.43 TCGA-WE-A8K5-06 9 130656868 130656868 G C ST6GALNAC6 Missense_Mutation p.R74G 0.39 benign(0.001) TCGA-WE-A8K5-06 9 131019775 131019775 G A GOLGA2 Silent p.V889V 0.38 TCGA-WE-A8K5-06 9 131193478 131193480 CTC TT CERCAM Frame_Shift_Del p.G368Afs*2 0.24 TCGA-WE-A8K5-06 9 131870208 131870208 C T CRAT Missense_Mutation p.S59N 0.34 tolerated(0.16) benign(0.009) TCGA-WE-A8K5-06 9 132401678 132401678 T G ASB6 Intron 0.50 TCGA-WE-A8K5-06 9 133329710 133329710 G A ASS1 Missense_Mutation p.E42K 0.39 deleterious(0) possibly_damaging(0.472) TCGA-WE-A8K5-06 9 133750428 133750428 C T ABL1 Missense_Mutation p.S439F 0.36 deleterious(0) probably_damaging(0.987) TCGA-WE-A8K5-06 9 135601081 135601081 G A AK8 Silent p.I478I 0.33 TCGA-WE-A8K5-06 9 136030673 136030673 G A GBGT1 Missense_Mutation p.P84L 0.41 deleterious(0) possibly_damaging(0.906) TCGA-WE-A8K5-06 9 136083941 136083941 G A OBP2B Missense_Mutation p.P41S 0.22 tolerated(0.21) possibly_damaging(0.733) TCGA-WE-A8K5-06 9 137321015 137321015 C T RXRA Silent p.I324I 0.34 TCGA-WE-A8K5-06 9 140777376 140777376 G T CACNA1B Intron 0.23 TCGA-WE-A8K5-06 9 21217127 21217127 C T IFNA16 Missense_Mutation p.G60R 0.65 tolerated(0.52) benign(0.029) TCGA-WE-A8K5-06 9 21970917 21970917 G A CDKN2A Silent p.A147A 0.57 TCGA-WE-A8K5-06 9 23692762 23692762 G A ELAVL2 Silent p.I291I 0.71 TCGA-WE-A8K5-06 9 27949704 27949704 G A LINGO2 Silent p.F322F 0.68 TCGA-WE-A8K5-06 9 35403224 35403224 C T UNC13B Missense_Mutation p.P1433L 0.74 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 9 36171167 36171167 G A CCIN Silent p.K556K 0.67 TCGA-WE-A8K5-06 9 36218205 36218205 C A GNE Silent p.A667A 0.57 TCGA-WE-A8K5-06 9 37740362 37740362 G A FRMPD1 Missense_Mutation p.E613K 0.48 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K5-06 9 43630687 43630687 G A SPATA31A6 Silent p.P5P 0.81 TCGA-WE-A8K5-06 9 5233861 5233861 T G INSL4 Missense_Mutation p.V135G 0.54 deleterious(0.01) benign(0.193) TCGA-WE-A8K5-06 9 71098803 71098803 C T PGM5 Missense_Mutation p.P440S 0.40 tolerated(1) benign(0.002) TCGA-WE-A8K5-06 9 73152076 73152076 C T TRPM3 Missense_Mutation p.G1306E 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8K5-06 9 74360360 74360360 G A TMEM2 Missense_Mutation p.T203I 0.35 tolerated(0.93) benign(0.005) TCGA-WE-A8K5-06 9 74361132 74361132 C G TMEM2 Missense_Mutation p.V153L 0.16 tolerated(0.74) benign(0.012) TCGA-WE-A8K5-06 9 77400815 77400815 G A TRPM6 Missense_Mutation p.P965L 0.40 deleterious(0) probably_damaging(0.928) TCGA-WE-A8K5-06 9 77411757 77411757 C T TRPM6 Missense_Mutation p.S764N 0.53 tolerated(0.09) possibly_damaging(0.881) TCGA-WE-A8K5-06 9 79117387 79117387 C T GCNT1 Silent p.S30S 0.39 TCGA-WE-A8K5-06 9 8492952 8492952 C T PTPRD Missense_Mutation p.E793K 0.59 tolerated(0.08) benign(0.13) TCGA-WE-A8K5-06 9 93606409 93606409 G A SYK Missense_Mutation p.A77T 0.18 tolerated(0.12) benign(0.003) TCGA-WE-A8K5-06 9 96019306 96019306 C T WNK2 Missense_Mutation p.P756L 0.25 unknown(0) TCGA-WE-A8K5-06 9 96097919 96097919 C T C9orf129 Silent p.G34G 0.50 TCGA-WE-A8K5-06 9 96097920 96097920 C T C9orf129 Missense_Mutation p.G34E 0.48 tolerated_low_confidence(0.07) probably_damaging(0.969) TCGA-WE-A8K5-06 9 97055341 97055341 C T ZNF169 Silent p.D82D 0.55 TCGA-WE-A8K5-06 9 97062248 97062248 C T ZNF169 Silent p.C136C 0.27 TCGA-WE-A8K5-06 X 100515087 100515087 C T DRP2 Missense_Mutation p.S893F 0.77 deleterious(0.02) probably_damaging(0.991) TCGA-WE-A8K5-06 X 107414632 107414632 C T COL4A6 Missense_Mutation p.E1089K 0.83 probably_damaging(0.955) TCGA-WE-A8K5-06 X 107430335 107430335 C T COL4A6 Missense_Mutation p.G649R 0.79 probably_damaging(1) TCGA-WE-A8K5-06 X 110576315 110576315 G A DCX Missense_Mutation p.R339C 0.94 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K5-06 X 119005748 119005748 C T RNF113A 5'UTR 0.85 TCGA-WE-A8K5-06 X 128678945 128678945 C T OCRL Nonsense_Mutation p.Q44* 0.68 TCGA-WE-A8K5-06 X 129201004 129201004 G A ELF4 Missense_Mutation p.P562S 0.84 tolerated(0.08) benign(0.03) TCGA-WE-A8K5-06 X 130218273 130218273 C T ARHGAP36 Missense_Mutation p.P214S 0.72 tolerated(0.4) benign(0.035) TCGA-WE-A8K5-06 X 130678950 130678950 G A OR13H1 Silent p.R301R 0.70 TCGA-WE-A8K5-06 X 132161742 132161742 G A USP26 Silent p.C169C 0.76 TCGA-WE-A8K5-06 X 140983194 140983194 G A MAGEC3 Splice_Site p.X350_splice 0.79 TCGA-WE-A8K5-06 X 151304141 151304141 G A MAGEA10 5'UTR 0.85 TCGA-WE-A8K5-06 X 152612966 152612966 C T ZNF275 Nonsense_Mutation p.R275* 0.70 TCGA-WE-A8K5-06 X 152772362 152772362 C T BGN Missense_Mutation p.R251C 0.76 deleterious(0.01) possibly_damaging(0.696) TCGA-WE-A8K5-06 X 1585453 1585453 C T P2RY8 5'UTR 0.45 TCGA-WE-A8K5-06 X 22151643 22151643 G A PHEX Missense_Mutation p.E436K 0.79 tolerated(0.11) benign(0.068) TCGA-WE-A8K5-06 X 23019812 23019812 G A DDX53 Silent p.R546R 0.81 TCGA-WE-A8K5-06 X 30254405 30254405 C T MAGEB3 Silent p.L122L 0.92 TCGA-WE-A8K5-06 X 30269469 30269469 G A MAGEB1 Missense_Mutation p.E287K 0.80 tolerated(0.06) possibly_damaging(0.691) TCGA-WE-A8K5-06 X 3238784 3238784 T A MXRA5 Missense_Mutation p.I1648L 0.80 deleterious(0.01) benign(0.077) TCGA-WE-A8K5-06 X 34149124 34149124 G A FAM47A Silent p.L424L 0.71 TCGA-WE-A8K5-06 X 34149224 34149224 G A FAM47A Missense_Mutation p.P391L 0.65 deleterious(0.03) benign(0.002) TCGA-WE-A8K5-06 X 36091327 36091327 G A CHDC2 Missense_Mutation p.E88K 0.91 tolerated(0.18) benign(0.036) TCGA-WE-A8K5-06 X 37027003 37027003 G A FAM47C Missense_Mutation p.E174K 0.77 tolerated(0.54) possibly_damaging(0.894) TCGA-WE-A8K5-06 X 44703343 44703343 G A DUSP21 5'UTR 0.80 TCGA-WE-A8K5-06 X 48244063 48244063 G A SSX4 Missense_Mutation p.E44K 0.41 deleterious(0.01) possibly_damaging(0.624) TCGA-WE-A8K5-06 X 48270247 48270247 C T SSX4B Missense_Mutation p.E44K 0.27 deleterious(0.01) possibly_damaging(0.624) TCGA-WE-A8K5-06 X 52841586 52841586 G A XAGE5 5'UTR 0.88 TCGA-WE-A8K5-06 X 54956237 54956237 C T TRO Missense_Mutation p.A1027V 0.73 tolerated(0.24) benign(0.341) TCGA-WE-A8K5-06 X 5811122 5811122 G A NLGN4X Silent p.I729I 0.90 TCGA-WE-A8K5-06 X 71360169 71360169 T A NHSL2 Missense_Mutation p.V924E 0.83 tolerated(0.08) benign(0.398) TCGA-WE-A8K5-06 X 73048982 73048982 C T XIST RNA 0.87 TCGA-WE-A8K5-06 X 7811917 7811917 G A VCX Missense_Mutation p.E161K 0.51 tolerated(0.14) unknown(0) TCGA-WE-A8K5-06 Y 6938849 6938849 G A TBL1Y Missense_Mutation p.E227K 0.72 tolerated(0.58) probably_damaging(0.993) TCGA-WE-A8K6-06 10 101636843 101636843 G A DNMBP 3'UTR 0.62 TCGA-WE-A8K6-06 10 115922792 115922792 G A C10orf118 Missense_Mutation p.S79F 0.78 tolerated_low_confidence(0.24) possibly_damaging(0.904) TCGA-WE-A8K6-06 10 1262994 1262994 C T ADARB2 Missense_Mutation p.E527K 0.24 deleterious(0) probably_damaging(0.929) TCGA-WE-A8K6-06 10 46999776 46999776 C T GPRIN2 Missense_Mutation p.P299L 0.19 deleterious(0) possibly_damaging(0.631) TCGA-WE-A8K6-06 10 50532006 50532006 A C C10orf71 Silent p.P472P 0.42 TCGA-WE-A8K6-06 10 5144384 5144384 C T AKR1C3 Missense_Mutation p.S221F 0.48 deleterious(0.01) possibly_damaging(0.769) TCGA-WE-A8K6-06 10 5435702 5435702 C T TUBAL3 Silent p.G373G 0.18 TCGA-WE-A8K6-06 10 61831458 61831458 G A ANK3 Missense_Mutation p.P3061S 0.70 probably_damaging(0.992) TCGA-WE-A8K6-06 10 68687190 68687190 C T LRRTM3 Silent p.I172I 0.77 TCGA-WE-A8K6-06 10 71142397 71142397 C T HK1 Silent p.L478L 0.50 TCGA-WE-A8K6-06 11 102991216 102991216 T A DYNC2H1 Missense_Mutation p.F347Y 0.43 benign(0.306) TCGA-WE-A8K6-06 11 113269786 113269786 C T ANKK1 Silent p.P365P 0.32 TCGA-WE-A8K6-06 11 113619094 113619094 G A ZW10 Missense_Mutation p.P325L 0.19 tolerated(0.82) benign(0.003) TCGA-WE-A8K6-06 11 121478841 121478841 G A SORL1 Missense_Mutation p.G1732E 0.36 deleterious(0.05) probably_damaging(1) TCGA-WE-A8K6-06 11 121500237 121500237 G A SORL1 Missense_Mutation p.G2204R 0.40 deleterious(0) probably_damaging(0.916) TCGA-WE-A8K6-06 11 124007768 124007768 G A VWA5A Missense_Mutation p.D558N 0.39 deleterious(0.04) possibly_damaging(0.67) TCGA-WE-A8K6-06 11 124619627 124619627 G A VSIG2 Missense_Mutation p.P188L 0.35 tolerated(0.36) benign(0.068) TCGA-WE-A8K6-06 11 134188974 134188974 C T GLB1L3 3'UTR 0.38 TCGA-WE-A8K6-06 11 15267713 15267713 A G INSC 3'UTR 0.36 TCGA-WE-A8K6-06 11 26582745 26582745 G A MUC15 Missense_Mutation p.P318L 0.44 deleterious(0) probably_damaging(0.958) TCGA-WE-A8K6-06 11 32636179 32636179 T C CCDC73 Missense_Mutation p.H562R 0.49 tolerated(0.28) benign(0.015) TCGA-WE-A8K6-06 11 4389518 4389518 G A OR52B4 Missense_Mutation p.T3I 0.39 tolerated(0.22) benign(0.002) TCGA-WE-A8K6-06 11 44296976 44296976 G A ALX4 Silent p.F233F 0.40 TCGA-WE-A8K6-06 11 47200569 47200569 C T PACSIN3 Missense_Mutation p.D305N 0.42 deleterious(0.05) benign(0.276) TCGA-WE-A8K6-06 11 47267111 47267111 G A ACP2 Missense_Mutation p.P155S 0.30 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 11 51411637 51411637 G A OR4A5 Silent p.F253F 0.34 TCGA-WE-A8K6-06 11 51515475 51515475 C T OR4C46 Missense_Mutation p.S65F 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K6-06 11 55433331 55433331 G A OR4C6 Missense_Mutation p.G230E 0.39 deleterious_low_confidence(0.02) benign(0.211) TCGA-WE-A8K6-06 11 55861092 55861092 T G OR8I2 Missense_Mutation p.F103L 0.42 tolerated(0.1) benign(0.039) TCGA-WE-A8K6-06 11 56019754 56019754 G A OR5T3 Missense_Mutation p.D27N 0.49 tolerated_low_confidence(0.36) benign(0.005) TCGA-WE-A8K6-06 11 56258625 56258625 G A OR5M8 Silent p.S74S 0.24 TCGA-WE-A8K6-06 11 57314105 57314105 C T SMTNL1 Silent p.T458T 0.56 TCGA-WE-A8K6-06 11 58207554 58207554 G A OR5B12 Missense_Mutation p.P24L 0.32 tolerated_low_confidence(0.06) benign(0.142) TCGA-WE-A8K6-06 11 6413395 6413395 C T SMPD1 Intron 0.38 TCGA-WE-A8K6-06 11 64532735 64532735 G A SF1 3'UTR 0.43 TCGA-WE-A8K6-06 11 64854484 64854484 C T ZFPL1 Missense_Mutation p.S189F 0.45 deleterious(0.01) benign(0.404) TCGA-WE-A8K6-06 11 66189620 66189620 C T NPAS4 Missense_Mutation p.L69F 0.57 tolerated(0.14) probably_damaging(0.929) TCGA-WE-A8K6-06 11 6789910 6789910 G T OR2AG2 Silent p.S93S 0.49 TCGA-WE-A8K6-06 11 6789911 6789911 G T OR2AG2 Missense_Mutation p.S93Y 0.49 deleterious(0) probably_damaging(0.98) TCGA-WE-A8K6-06 12 100784796 100784796 G A SLC17A8 Nonsense_Mutation p.W124* 0.23 TCGA-WE-A8K6-06 12 10224084 10224084 G A CLEC1A Missense_Mutation p.P231S 0.29 tolerated(0.73) benign(0.017) TCGA-WE-A8K6-06 12 104147018 104147018 C T STAB2 Missense_Mutation p.H2201Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 12 111758572 111758572 G A CUX2 Missense_Mutation p.G920E 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 12 11420678 11420678 C T PRB3 Missense_Mutation p.G169R 0.81 tolerated(0.4) unknown(0) TCGA-WE-A8K6-06 12 129694140 129694140 G A TMEM132D Silent p.S456S 0.53 TCGA-WE-A8K6-06 12 129694141 129694141 G A TMEM132D Missense_Mutation p.S456F 0.52 deleterious(0) probably_damaging(0.921) TCGA-WE-A8K6-06 12 130841620 130841620 C T PIWIL1 Missense_Mutation p.A521V 0.67 deleterious(0.01) benign(0.276) TCGA-WE-A8K6-06 12 131561408 131561408 C T GPR133 Silent p.F512F 0.62 TCGA-WE-A8K6-06 12 32884426 32884426 G A DNM1L Missense_Mutation p.C446Y 0.57 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K6-06 12 39979984 39979984 G A ABCD2 Missense_Mutation p.H588Y 0.52 tolerated(0.17) benign(0.082) TCGA-WE-A8K6-06 12 48919933 48919933 C T OR8S1 Silent p.I173I 0.29 TCGA-WE-A8K6-06 12 49434741 49434741 G A KMT2D Missense_Mutation p.P2271L 0.22 benign(0.093) TCGA-WE-A8K6-06 12 52758946 52758946 G A KRT85 Silent p.F143F 0.49 TCGA-WE-A8K6-06 12 53295691 53295691 C T KRT8 Missense_Mutation p.E192K 0.58 deleterious(0) probably_damaging(0.944) TCGA-WE-A8K6-06 12 56559474 56559474 G A SMARCC2 Nonsense_Mutation p.Q923* 0.28 TCGA-WE-A8K6-06 12 57112742 57112742 G A NACA Intron 0.25 TCGA-WE-A8K6-06 12 57894198 57894198 C T MARS Silent p.L396L 0.27 TCGA-WE-A8K6-06 12 59279677 59279677 G A LRIG3 Nonsense_Mutation p.Q394* 0.55 TCGA-WE-A8K6-06 12 64038264 64038264 G A DPY19L2 Missense_Mutation p.P241L 0.46 deleterious(0.03) probably_damaging(0.976) TCGA-WE-A8K6-06 12 6500217 6500217 C T LTBR 3'UTR 0.84 TCGA-WE-A8K6-06 12 6626089 6626089 C T NCAPD2 Silent p.T361T 0.53 TCGA-WE-A8K6-06 12 6969337 6969337 C T USP5 Missense_Mutation p.L385F 0.53 deleterious(0.01) probably_damaging(0.99) TCGA-WE-A8K6-06 12 70004614 70004614 C T LRRC10 Missense_Mutation p.G2E 0.62 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8K6-06 12 7548778 7548778 C T CD163L1 Missense_Mutation p.D655N 0.28 tolerated(0.53) benign(0.088) TCGA-WE-A8K6-06 12 94975696 94975696 C G TMCC3 Missense_Mutation p.E233Q 0.30 tolerated(0.06) possibly_damaging(0.816) TCGA-WE-A8K6-06 13 101944702 101944702 G A NALCN Missense_Mutation p.T272I 0.39 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 13 32722084 32722084 G A FRY Silent p.Q464Q 0.45 TCGA-WE-A8K6-06 13 50054464 50054464 C T SETDB2 Missense_Mutation p.P339S 0.35 deleterious(0.03) possibly_damaging(0.764) TCGA-WE-A8K6-06 13 53035494 53035494 A G CKAP2 Missense_Mutation p.Y179C 0.27 deleterious(0.03) possibly_damaging(0.557) TCGA-WE-A8K6-06 13 53624329 53624329 G A OLFM4 Missense_Mutation p.R319Q 0.41 tolerated(0.55) benign(0.036) TCGA-WE-A8K6-06 13 58299516 58299516 G A PCDH17 3'UTR 0.50 TCGA-WE-A8K6-06 13 84454224 84454224 C T SLITRK1 Silent p.L473L 0.23 TCGA-WE-A8K6-06 13 99364198 99364198 C T SLC15A1 Splice_Site p.X271_splice 0.38 TCGA-WE-A8K6-06 14 104484450 104484450 G A TDRD9 Missense_Mutation p.G785R 0.16 deleterious(0) probably_damaging(0.989) TCGA-WE-A8K6-06 14 106791252 106791252 C T IGHV3-30 Missense_Mutation p.R35K 0.31 tolerated_low_confidence(0.06) benign(0.007) TCGA-WE-A8K6-06 14 107218849 107218849 G A IGHV3-74 Missense_Mutation p.P60S 0.27 deleterious_low_confidence(0.02) benign(0.446) TCGA-WE-A8K6-06 14 22740354 22740354 G A TRAV38-1 Silent p.V86V 0.33 TCGA-WE-A8K6-06 14 23900656 23900656 C T MYH7 Missense_Mutation p.G256E 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 14 35592516 35592516 T C KIAA0391 Missense_Mutation p.L22P 0.57 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-WE-A8K6-06 14 74424730 74424730 T A ENTPD5 3'Flank 0.50 TCGA-WE-A8K6-06 14 77579880 77579880 C T CIPC Missense_Mutation p.P140L 0.67 deleterious(0) benign(0.01) TCGA-WE-A8K6-06 14 95108048 95108048 C T SERPINA13P RNA 0.53 TCGA-WE-A8K6-06 15 23812334 23812334 C T MKRN3 Missense_Mutation p.R469W 0.47 tolerated(0.22) benign(0.005) TCGA-WE-A8K6-06 15 25324069 25324069 C T SNORD116-12 3'Flank 0.55 TCGA-WE-A8K6-06 15 31779762 31779762 G A OTUD7A Silent p.I386I 0.48 TCGA-WE-A8K6-06 15 42174207 42174207 C T SPTBN5 Missense_Mutation p.R795H 0.54 benign(0.016) TCGA-WE-A8K6-06 15 71124702 71124702 G A LARP6 Missense_Mutation p.R389C 0.40 deleterious(0) probably_damaging(0.996) TCGA-WE-A8K6-06 15 76071797 76071797 G A RP11-24M17.5 RNA 0.42 TCGA-WE-A8K6-06 15 84685194 84685194 C T ADAMTSL3 Nonsense_Mutation p.Q1406* 0.37 TCGA-WE-A8K6-06 15 93595650 93595650 G A RGMA Missense_Mutation p.P81L 0.31 tolerated(0.48) benign(0.167) TCGA-WE-A8K6-06 16 1549256 1549256 G A TELO2 Silent p.L285L 0.35 TCGA-WE-A8K6-06 16 19485576 19485576 G A TMC5 Missense_Mutation p.E690K 0.37 tolerated(0.08) benign(0.009) TCGA-WE-A8K6-06 16 21213142 21213142 C T ZP2 Silent p.V463V 0.45 TCGA-WE-A8K6-06 16 2220642 2220642 G A TRAF7 Missense_Mutation p.D87N 0.19 tolerated(0.19) benign(0.41) TCGA-WE-A8K6-06 16 24808856 24808856 C T TNRC6A Missense_Mutation p.P1203S 0.36 tolerated(0.13) probably_damaging(0.99) TCGA-WE-A8K6-06 16 2546228 2546228 C T RP11-20I23.1 Silent p.L27L 0.26 TCGA-WE-A8K6-06 16 27078373 27078373 C T C16orf82 RNA 0.40 TCGA-WE-A8K6-06 16 29820931 29820931 C T MAZ Silent p.D450D 0.34 TCGA-WE-A8K6-06 16 29820932 29820932 C T MAZ Missense_Mutation p.R451C 0.34 tolerated_low_confidence(0.07) possibly_damaging(0.542) TCGA-WE-A8K6-06 16 3336074 3336074 G A ZNF263 Missense_Mutation p.G232R 0.41 tolerated(0.26) benign(0.023) TCGA-WE-A8K6-06 16 4764110 4764110 G A ANKS3 Silent p.I217I 0.42 TCGA-WE-A8K6-06 16 61760853 61760853 C T CDH8 Intron 0.46 TCGA-WE-A8K6-06 16 65032665 65032665 C T CDH11 Missense_Mutation p.G108E 0.41 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 16 67320369 67320369 G A PLEKHG4 Missense_Mutation p.D852N 0.51 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 17 10304859 10304859 C T MYH8 Splice_Site p.X977_splice 0.57 TCGA-WE-A8K6-06 17 17425608 17425608 G A PEMT Silent p.F102F 0.40 TCGA-WE-A8K6-06 17 18022750 18022750 C T MYO15A Silent p.A212A 0.36 TCGA-WE-A8K6-06 17 18022751 18022751 C T MYO15A Missense_Mutation p.P213S 0.33 benign(0.445) TCGA-WE-A8K6-06 17 26110070 26110070 C T NOS2 Missense_Mutation p.G177E 0.25 deleterious(0.03) benign(0.174) TCGA-WE-A8K6-06 17 27017949 27017949 C T SUPT6H Silent p.I1167I 0.28 TCGA-WE-A8K6-06 17 29653001 29653001 C T NF1 Missense_Mutation p.P1667S 0.27 tolerated(0.12) probably_damaging(0.993) TCGA-WE-A8K6-06 17 33477188 33477188 G A UNC45B Silent p.R109R 0.44 TCGA-WE-A8K6-06 17 33495299 33495299 C T UNC45B Silent p.F457F 0.25 TCGA-WE-A8K6-06 17 36486515 36486515 G A GPR179 Silent p.V979V 0.60 TCGA-WE-A8K6-06 17 38252173 38252173 G A NR1D1 Missense_Mutation p.P258S 0.41 tolerated(0.21) benign(0.003) TCGA-WE-A8K6-06 17 38644990 38644990 C T TNS4 Missense_Mutation p.R224Q 0.55 tolerated(0.62) benign(0) TCGA-WE-A8K6-06 17 39644974 39644974 G A KRT36 Silent p.I154I 0.66 TCGA-WE-A8K6-06 17 47587975 47587975 C T NGFR Missense_Mutation p.S257F 0.54 deleterious(0) probably_damaging(0.916) TCGA-WE-A8K6-06 17 48267915 48267915 G A COL1A1 Missense_Mutation p.R796C 0.26 unknown(0) TCGA-WE-A8K6-06 17 54534744 54534744 C T ANKFN1 Silent p.F481F 0.49 TCGA-WE-A8K6-06 17 60744173 60744173 G A MRC2 Silent p.T305T 0.45 TCGA-WE-A8K6-06 17 6594125 6594125 G A SLC13A5 Silent p.T470T 0.60 TCGA-WE-A8K6-06 17 71239078 71239078 T G C17orf80 Silent p.G555G 0.14 TCGA-WE-A8K6-06 17 79911022 79911022 G A NOTUM Silent p.L436L 0.26 TCGA-WE-A8K6-06 17 79911023 79911023 G A NOTUM Silent p.H435H 0.27 TCGA-WE-A8K6-06 17 8134667 8134667 G A CTC1 Nonsense_Mutation p.Q866* 0.43 TCGA-WE-A8K6-06 17 8134668 8134668 G T CTC1 Silent p.S865S 0.45 TCGA-WE-A8K6-06 17 9536299 9536299 C T WDR16 Silent p.I423I 0.32 TCGA-WE-A8K6-06 18 20932251 20932251 C T TMEM241 Missense_Mutation p.G225E 0.41 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K6-06 18 43437813 43437813 C T EPG5 Intron 0.44 TCGA-WE-A8K6-06 18 54293619 54293619 G A TXNL1 Silent p.F56F 0.41 TCGA-WE-A8K6-06 19 10089899 10089899 A G COL5A3 Missense_Mutation p.V928A 0.54 unknown(0) TCGA-WE-A8K6-06 19 10449714 10449714 G T ICAM3 Intron 0.43 TCGA-WE-A8K6-06 19 12059533 12059533 C T ZNF700 Missense_Mutation p.H232Y 0.33 tolerated(0.93) benign(0.007) TCGA-WE-A8K6-06 19 17373787 17373787 C T USHBP1 Silent p.K72K 0.22 TCGA-WE-A8K6-06 19 19030509 19030509 C T DDX49 5'UTR 0.21 TCGA-WE-A8K6-06 19 19257613 19257613 C T MEF2B Missense_Mutation p.E205K 0.59 deleterious(0.01) benign(0.022) TCGA-WE-A8K6-06 19 20117220 20117220 C T ZNF682 Missense_Mutation p.S364N 0.22 deleterious(0.01) benign(0.353) TCGA-WE-A8K6-06 19 20308829 20308829 A G ZNF486 Missense_Mutation p.K437R 0.66 deleterious(0.01) benign(0.185) TCGA-WE-A8K6-06 19 2275756 2275756 C T C19orf35 Missense_Mutation p.D449N 0.38 deleterious(0) possibly_damaging(0.824) TCGA-WE-A8K6-06 19 23578145 23578145 G A ZNF91 Silent p.T4T 0.34 TCGA-WE-A8K6-06 19 30935520 30935520 G A ZNF536 Missense_Mutation p.G351S 0.61 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K6-06 19 38995689 38995689 G A RYR1 Missense_Mutation p.E2760K 0.59 benign(0.052) TCGA-WE-A8K6-06 19 40900428 40900428 G A PRX Silent p.P1277P 0.23 TCGA-WE-A8K6-06 19 40900429 40900429 G A PRX Missense_Mutation p.P1277L 0.25 tolerated(0.11) possibly_damaging(0.851) TCGA-WE-A8K6-06 19 43430859 43430859 G T PSG7 Missense_Mutation p.P240H 0.28 deleterious(0.02) possibly_damaging(0.894) TCGA-WE-A8K6-06 19 44537222 44537222 A G ZNF222 3'UTR 0.75 TCGA-WE-A8K6-06 19 46215873 46215873 G A FBXO46 Missense_Mutation p.P294L 0.19 tolerated(0.27) probably_damaging(0.958) TCGA-WE-A8K6-06 19 46973630 46973630 C T PNMAL1 Silent p.T221T 0.64 TCGA-WE-A8K6-06 19 47575107 47575107 G A ZC3H4 Nonsense_Mutation p.Q692* 0.51 TCGA-WE-A8K6-06 19 48718601 48718601 G A CARD8 Silent p.F448F 0.12 TCGA-WE-A8K6-06 19 4891051 4891051 C T ARRDC5 3'UTR 0.23 TCGA-WE-A8K6-06 19 50248627 50248627 C T TSKS Missense_Mutation p.R340Q 0.44 tolerated(0.34) benign(0.144) TCGA-WE-A8K6-06 19 50461824 50461824 G A SIGLEC11 Missense_Mutation p.P456L 0.29 deleterious(0) benign(0.311) TCGA-WE-A8K6-06 19 51633196 51633196 C T SIGLEC9 Intron 0.56 TCGA-WE-A8K6-06 19 52091140 52091140 A T ZNF175 Missense_Mutation p.N519I 0.33 tolerated(0.14) probably_damaging(0.998) TCGA-WE-A8K6-06 19 52942086 52942086 G A ZNF534 Missense_Mutation p.R471K 0.25 tolerated(0.22) benign(0.035) TCGA-WE-A8K6-06 19 54687452 54687452 G A MBOAT7 Silent p.L149L 0.43 TCGA-WE-A8K6-06 19 613455 613455 G A HCN2 Missense_Mutation p.E598K 0.25 deleterious(0.04) benign(0.282) TCGA-WE-A8K6-06 19 9071092 9071092 G A MUC16 Silent p.L5452L 0.32 TCGA-WE-A8K6-06 19 9074296 9074296 C T MUC16 Missense_Mutation p.G4384R 0.59 unknown(0) TCGA-WE-A8K6-06 1 10292427 10292427 C T KIF1B Missense_Mutation p.P14L 0.39 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K6-06 1 103379204 103379204 G A COL11A1 Missense_Mutation p.P1341S 0.31 unknown(0) TCGA-WE-A8K6-06 1 10386376 10386376 C T KIF1B Silent p.D915D 0.51 TCGA-WE-A8K6-06 1 110257602 110257602 C T GSTM5 Missense_Mutation p.P132S 0.20 deleterious(0.01) benign(0.33) TCGA-WE-A8K6-06 1 110561083 110561083 C T AHCYL1 Silent p.I404I 0.59 TCGA-WE-A8K6-06 1 110882560 110882560 G T RBM15 Missense_Mutation p.G178V 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 1 110996676 110996676 G A PROK1 Missense_Mutation p.E56K 0.28 tolerated(0.37) benign(0.224) TCGA-WE-A8K6-06 1 114438393 114438393 G A AP4B1 Missense_Mutation p.S593F 0.22 deleterious(0.02) benign(0.158) TCGA-WE-A8K6-06 1 120168623 120168623 G A ZNF697 Missense_Mutation p.P34L 0.57 deleterious_low_confidence(0.04) benign(0.221) TCGA-WE-A8K6-06 1 120168625 120168625 G T ZNF697 Missense_Mutation p.D33E 0.58 deleterious_low_confidence(0.05) benign(0.119) TCGA-WE-A8K6-06 1 12428625 12428625 C T VPS13D Silent p.F3517F 0.38 TCGA-WE-A8K6-06 1 12428626 12428626 C T VPS13D Nonsense_Mutation p.R3518* 0.39 TCGA-WE-A8K6-06 1 145765206 145765206 G A GPR89A Missense_Mutation p.S394F 0.15 deleterious(0) probably_damaging(0.991) TCGA-WE-A8K6-06 1 150484099 150484099 C T ECM1 Missense_Mutation p.S319F 0.25 deleterious(0.02) probably_damaging(0.958) TCGA-WE-A8K6-06 1 152749062 152749062 G A LCE1F Missense_Mutation p.G72E 0.55 tolerated_low_confidence(0.06) unknown(0) TCGA-WE-A8K6-06 1 153270417 153270417 G A PGLYRP3 3'UTR 0.30 TCGA-WE-A8K6-06 1 158368570 158368570 G A OR10T2 Silent p.I229I 0.28 TCGA-WE-A8K6-06 1 159284312 159284312 G A OR10J3 Silent p.I46I 0.25 TCGA-WE-A8K6-06 1 17314715 17314715 G A ATP13A2 Missense_Mutation p.S926F 0.31 deleterious(0) probably_damaging(0.97) TCGA-WE-A8K6-06 1 17314716 17314716 A C ATP13A2 Missense_Mutation p.S926A 0.34 tolerated(0.67) benign(0.115) TCGA-WE-A8K6-06 1 173155723 173155723 C T TNFSF4 Missense_Mutation p.D162N 0.27 tolerated(0.39) possibly_damaging(0.78) TCGA-WE-A8K6-06 1 196303097 196303097 C T KCNT2 Missense_Mutation p.R626K 0.12 tolerated(0.13) benign(0.022) TCGA-WE-A8K6-06 1 196397244 196397244 A G KCNT2 Silent p.P325P 0.14 TCGA-WE-A8K6-06 1 201287783 201287783 G A PKP1 Silent p.K364K 0.61 TCGA-WE-A8K6-06 1 201861088 201861088 C T SHISA4 3'UTR 0.19 TCGA-WE-A8K6-06 1 20471170 20471170 G A PLA2G2F Missense_Mutation p.E138K 0.50 tolerated(0.53) benign(0.003) TCGA-WE-A8K6-06 1 215972393 215972393 G A USH2A Missense_Mutation p.P3272S 0.69 probably_damaging(1) TCGA-WE-A8K6-06 1 227152931 227152931 C T ADCK3 Silent p.S136S 0.18 TCGA-WE-A8K6-06 1 23240090 23240090 C T EPHB2 3'UTR 0.50 TCGA-WE-A8K6-06 1 237995852 237995852 G A RYR2 Missense_Mutation p.E4937K 0.61 benign(0.126) TCGA-WE-A8K6-06 1 23845529 23845529 C T E2F2 Silent p.L277L 0.33 TCGA-WE-A8K6-06 1 248084785 248084785 C T OR2T8 Silent p.L156L 0.14 TCGA-WE-A8K6-06 1 248436651 248436651 G A OR2T33 Silent p.L156L 0.04 TCGA-WE-A8K6-06 1 26694168 26694168 C T ZNF683 Missense_Mutation p.D79N 0.48 deleterious(0.03) benign(0.19) TCGA-WE-A8K6-06 1 27700877 27700877 G A FCN3 Missense_Mutation p.P53S 0.28 tolerated(0.06) probably_damaging(0.985) TCGA-WE-A8K6-06 1 37291272 37291272 G A GRIK3 Silent p.S562S 0.50 TCGA-WE-A8K6-06 1 39466645 39466645 T C AKIRIN1 Silent p.G121G 0.32 TCGA-WE-A8K6-06 1 46087320 46087320 A T CCDC17 Missense_Mutation p.Y392N 0.43 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 1 57285033 57285033 C T C1orf168 5'UTR 0.67 TCGA-WE-A8K6-06 1 60456309 60456309 A G C1orf87 3'UTR 0.47 TCGA-WE-A8K6-06 1 68153364 68153364 G A GADD45A Nonsense_Mutation p.W135* 0.43 TCGA-WE-A8K6-06 20 24988310 24988310 G A ACSS1 3'UTR 0.36 TCGA-WE-A8K6-06 20 2638622 2638622 G A NOP56 Silent p.E489E 0.25 TCGA-WE-A8K6-06 20 2638623 2638623 G A NOP56 Missense_Mutation p.V490I 0.25 tolerated(0.11) benign(0.002) TCGA-WE-A8K6-06 21 35821832 35821832 G A KCNE1 Missense_Mutation p.S34F 0.35 deleterious(0.03) benign(0.033) TCGA-WE-A8K6-06 21 39671858 39671858 G A KCNJ15 Silent p.G225G 0.16 TCGA-WE-A8K6-06 22 22322062 22322062 G A TOP3B Silent p.L255L 0.42 TCGA-WE-A8K6-06 22 31688413 31688413 C A PIK3IP1 5'UTR 1.00 TCGA-WE-A8K6-06 22 37882100 37882100 G A MFNG Missense_Mutation p.P39L 0.85 tolerated(0.07) benign(0.006) TCGA-WE-A8K6-06 22 38120116 38120116 C T TRIOBP Missense_Mutation p.P518L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8K6-06 22 50885250 50885250 C T SBF1 3'UTR 0.88 TCGA-WE-A8K6-06 2 101188178 101188178 G A PDCL3 Silent p.T165T 0.14 TCGA-WE-A8K6-06 2 102836401 102836401 G A IL1RL2 Silent p.V305V 0.24 TCGA-WE-A8K6-06 2 116066877 116066877 G A DPP10 Silent p.V45V 0.43 TCGA-WE-A8K6-06 2 119699829 119699829 G A MARCO 5'UTR 0.29 TCGA-WE-A8K6-06 2 1426851 1426851 G A TPO Silent p.L43L 0.48 TCGA-WE-A8K6-06 2 152531005 152531005 T G NEB Missense_Mutation p.N1325H 0.29 probably_damaging(0.991) TCGA-WE-A8K6-06 2 163029670 163029670 C T FAP Missense_Mutation p.G699E 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 2 168103769 168103769 C T XIRP2 Missense_Mutation p.S1956F 0.28 benign(0.022) TCGA-WE-A8K6-06 2 179418370 179418370 C T TTN Missense_Mutation p.G29788R 0.54 TCGA-WE-A8K6-06 2 179466246 179466246 C T TTN Missense_Mutation p.R18493K 0.26 TCGA-WE-A8K6-06 2 179480085 179480085 G A TTN Missense_Mutation p.P16196L 0.54 TCGA-WE-A8K6-06 2 179481670 179481670 G A TTN Silent p.I15982I 0.21 TCGA-WE-A8K6-06 2 179592571 179592571 C T TTN Silent p.V6578V 0.26 TCGA-WE-A8K6-06 2 179614349 179614349 C T TTN Intron 0.22 TCGA-WE-A8K6-06 2 206869937 206869937 G A INO80D Missense_Mutation p.P747S 0.18 tolerated_low_confidence(0.18) benign(0.402) TCGA-WE-A8K6-06 2 207175052 207175052 G A ZDBF2 Missense_Mutation p.A1934T 0.51 tolerated(0.34) possibly_damaging(0.483) TCGA-WE-A8K6-06 2 228497733 228497733 C T C2orf83 Silent p.T23T 0.34 TCGA-WE-A8K6-06 2 228860234 228860234 C T SPHKAP Missense_Mutation p.R1542Q 0.54 deleterious(0.04) benign(0.048) TCGA-WE-A8K6-06 2 32475491 32475491 G A NLRC4 Missense_Mutation p.S481L 0.63 tolerated(0.17) probably_damaging(0.91) TCGA-WE-A8K6-06 2 46739467 46739467 C T ATP6V1E2 Silent p.L128L 0.28 TCGA-WE-A8K6-06 2 61417488 61417488 T C USP34 Missense_Mutation p.N3264S 0.29 tolerated(0.59) benign(0.054) TCGA-WE-A8K6-06 2 71766338 71766338 G A DYSF Silent p.S515S 0.37 TCGA-WE-A8K6-06 2 95945698 95945698 C T PROM2 Silent p.P460P 0.62 TCGA-WE-A8K6-06 2 97427645 97427645 C T CNNM4 Silent p.I303I 0.24 TCGA-WE-A8K6-06 3 107097274 107097274 C T CCDC54 Silent p.T280T 0.43 TCGA-WE-A8K6-06 3 11059028 11059028 G A SLC6A1 Missense_Mutation p.R44Q 0.44 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 3 113169209 113169209 A T SPICE1 Missense_Mutation p.V766D 0.40 deleterious(0) possibly_damaging(0.675) TCGA-WE-A8K6-06 3 113169210 113169210 C A SPICE1 Missense_Mutation p.V766F 0.41 tolerated(0.06) possibly_damaging(0.617) TCGA-WE-A8K6-06 3 119246588 119246588 C T CD80 3'UTR 0.21 TCGA-WE-A8K6-06 3 127411066 127411066 G A MGLL Missense_Mutation p.T306M 0.39 tolerated_low_confidence(0.1) benign(0.003) TCGA-WE-A8K6-06 3 129247877 129247877 G A RHO Missense_Mutation p.G101R 0.41 tolerated(0.07) probably_damaging(0.967) TCGA-WE-A8K6-06 3 132394110 132394110 T C UBA5 Silent p.G277G 0.45 TCGA-WE-A8K6-06 3 139236294 139236294 C T RBP1 3'UTR 0.50 TCGA-WE-A8K6-06 3 164697096 164697096 G A SI 3'UTR 0.43 TCGA-WE-A8K6-06 3 171320840 171320840 A C PLD1 3'UTR 0.50 TCGA-WE-A8K6-06 3 183639018 183639018 G A ABCC5 3'UTR 0.35 TCGA-WE-A8K6-06 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.52 TCGA-WE-A8K6-06 3 189702380 189702380 C T LEPREL1 Splice_Site p.X397_splice 0.39 TCGA-WE-A8K6-06 3 193029670 193029670 G A ATP13A5 Missense_Mutation p.H794Y 0.49 deleterious(0.01) benign(0.38) TCGA-WE-A8K6-06 3 195955064 195955064 G A SLC51A Silent p.T147T 0.17 TCGA-WE-A8K6-06 3 196630415 196630415 C T SENP5 Silent p.F606F 0.38 TCGA-WE-A8K6-06 3 197023252 197023252 T C DLG1 Missense_Mutation p.N39S 0.43 tolerated(0.55) benign(0.004) TCGA-WE-A8K6-06 3 38022271 38022271 G A CTDSPL Silent p.T248T 0.46 TCGA-WE-A8K6-06 3 38141784 38141784 C T DLEC1 Missense_Mutation p.P911L 0.18 tolerated(0.11) benign(0.042) TCGA-WE-A8K6-06 3 38770042 38770042 C T SCN10A Silent p.G877G 0.51 TCGA-WE-A8K6-06 3 40293465 40293465 G A MYRIP Missense_Mutation p.R841K 0.15 tolerated_low_confidence(0.21) benign(0.015) TCGA-WE-A8K6-06 3 44497130 44497130 T C ZNF445 5'UTR 0.36 TCGA-WE-A8K6-06 3 4458832 4458832 C T SUMF1 Missense_Mutation p.G274S 0.38 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K6-06 3 46307037 46307037 G A CCR3 Missense_Mutation p.D151N 0.20 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 3 49162447 49162447 C T LAMB2 Missense_Mutation p.G959D 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 3 49162448 49162448 C T LAMB2 Missense_Mutation p.G959S 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 3 50332965 50332965 T A HYAL3 Silent p.L23L 0.57 TCGA-WE-A8K6-06 3 52361909 52361909 T A DNAH1 Missense_Mutation p.N250K 0.37 possibly_damaging(0.694) TCGA-WE-A8K6-06 3 56627552 56627552 G A CCDC66 Missense_Mutation p.D368N 0.38 deleterious(0) probably_damaging(0.953) TCGA-WE-A8K6-06 3 69998272 69998272 G A MITF Missense_Mutation p.S278N 0.45 deleterious(0.03) benign(0.018) TCGA-WE-A8K6-06 3 95374370 95374370 C T MTHFD2P1 RNA 0.53 TCGA-WE-A8K6-06 4 100532356 100532356 C T MTTP Missense_Mutation p.S609F 0.34 deleterious(0) possibly_damaging(0.779) TCGA-WE-A8K6-06 4 106880234 106880234 C T NPNT Silent p.I462I 0.35 TCGA-WE-A8K6-06 4 126389725 126389725 G A FAT4 Missense_Mutation p.M3986I 0.31 benign(0) TCGA-WE-A8K6-06 4 154547345 154547345 C T KIAA0922 Silent p.S1364S 0.21 TCGA-WE-A8K6-06 4 170989744 170989744 G A AADAT Nonsense_Mutation p.Q300* 0.40 TCGA-WE-A8K6-06 4 186380195 186380195 T C CCDC110 Missense_Mutation p.N516D 0.39 tolerated(0.12) benign(0.104) TCGA-WE-A8K6-06 4 46060239 46060239 G A GABRG1 Missense_Mutation p.S304L 0.48 tolerated(0.1) probably_damaging(0.996) TCGA-WE-A8K6-06 4 46737006 46737006 G A COX7B2 Silent p.S68S 0.19 TCGA-WE-A8K6-06 4 47746587 47746587 G A CORIN Missense_Mutation p.P211S 0.20 deleterious(0.02) probably_damaging(0.913) TCGA-WE-A8K6-06 4 65165729 65165729 C T TECRL Missense_Mutation p.G246E 0.47 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 4 85540647 85540647 C T CDS1 Missense_Mutation p.R181C 0.34 deleterious(0.01) benign(0.094) TCGA-WE-A8K6-06 4 89772247 89772247 G A FAM13A Missense_Mutation p.R311W 0.04 tolerated(0.13) benign(0.001) TCGA-WE-A8K6-06 5 128351585 128351585 G A SLC27A6 Missense_Mutation p.G326E 0.62 tolerated(0.5) benign(0.042) TCGA-WE-A8K6-06 5 130762828 130762828 G - CTC-432M15.3 3'UTR 0.27 TCGA-WE-A8K6-06 5 132362208 132362208 G A ZCCHC10 Silent p.L8L 0.29 TCGA-WE-A8K6-06 5 140346826 140346826 G A PCDHAC2 Missense_Mutation p.E159K 0.33 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 5 140711937 140711937 C T PCDHGA1 Silent p.I562I 0.54 TCGA-WE-A8K6-06 5 140729843 140729843 G A PCDHGB1 Missense_Mutation p.E6K 0.25 tolerated(0.63) benign(0) TCGA-WE-A8K6-06 5 140867141 140867141 C T PCDHGC4 Missense_Mutation p.R801C 0.57 deleterious(0.05) possibly_damaging(0.835) TCGA-WE-A8K6-06 5 145252473 145252473 C T GRXCR2 Missense_Mutation p.R20Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K6-06 5 150099321 150099321 G A DCTN4 Missense_Mutation p.P314L 0.53 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 5 159437652 159437652 G A TTC1 Silent p.Q39Q 0.21 TCGA-WE-A8K6-06 5 176053504 176053504 G A SNCB Silent p.T59T 0.48 TCGA-WE-A8K6-06 5 179739480 179739480 G A GFPT2 Missense_Mutation p.S499L 0.20 deleterious(0.02) benign(0.03) TCGA-WE-A8K6-06 5 36249793 36249793 G A RANBP3L Missense_Mutation p.S479F 0.47 deleterious(0.01) possibly_damaging(0.678) TCGA-WE-A8K6-06 5 45261912 45261912 T C HCN1 3'UTR 0.61 TCGA-WE-A8K6-06 5 57913640 57913640 C T RAB3C Silent p.I65I 0.22 TCGA-WE-A8K6-06 5 63256458 63256458 G A HTR1A Silent p.I363I 0.23 TCGA-WE-A8K6-06 5 74077644 74077644 A G FAM169A Missense_Mutation p.S552P 0.51 tolerated(0.3) benign(0.005) TCGA-WE-A8K6-06 5 74325482 74325482 C A GCNT4 Missense_Mutation p.E127D 0.25 deleterious(0.01) benign(0.275) TCGA-WE-A8K6-06 5 94024218 94024218 C T ANKRD32 Missense_Mutation p.S710F 0.65 deleterious(0) possibly_damaging(0.815) TCGA-WE-A8K6-06 6 10429985 10429985 A G LINC00518 RNA 0.55 TCGA-WE-A8K6-06 6 108508689 108508689 C T NR2E1 3'UTR 0.39 TCGA-WE-A8K6-06 6 112390750 112390750 G A WISP3 Nonsense_Mutation p.W349* 0.73 TCGA-WE-A8K6-06 6 118887152 118887152 C T CEP85L Missense_Mutation p.G190E 0.77 tolerated(0.06) benign(0.088) TCGA-WE-A8K6-06 6 12123557 12123557 A T HIVEP1 Missense_Mutation p.I1177L 0.48 tolerated(0.42) benign(0.005) TCGA-WE-A8K6-06 6 133767775 133767775 G A EYA4 Missense_Mutation p.E31K 0.73 deleterious(0.01) possibly_damaging(0.693) TCGA-WE-A8K6-06 6 25726495 25726495 C T HIST1H2AA Silent p.A87A 0.40 TCGA-WE-A8K6-06 6 30863250 30863251 - C DDR1 Frame_Shift_Ins p.T531Hfs*21 0.31 TCGA-WE-A8K6-06 6 31107442 31107442 G A PSORS1C1 Missense_Mutation p.M64I 0.45 tolerated_low_confidence(0.25) benign(0.043) TCGA-WE-A8K6-06 6 32181896 32181896 C T NOTCH4 Missense_Mutation p.G720S 0.36 deleterious(0.02) possibly_damaging(0.543) TCGA-WE-A8K6-06 6 35959550 35959550 C T SLC26A8 Silent p.A276A 0.18 TCGA-WE-A8K6-06 6 38750915 38750915 G A DNAH8 Missense_Mutation p.A582T 0.53 benign(0.244) TCGA-WE-A8K6-06 6 43970750 43970750 C T C6orf223 Missense_Mutation p.P206S 0.33 tolerated_low_confidence(0.1) benign(0.188) TCGA-WE-A8K6-06 6 49423862 49423862 A T MUT Nonsense_Mutation p.L281* 0.42 TCGA-WE-A8K6-06 6 52878485 52878485 G A ICK Missense_Mutation p.S376F 0.42 deleterious(0.03) benign(0.013) TCGA-WE-A8K6-06 6 87725501 87725501 C T HTR1E Missense_Mutation p.S150F 0.79 deleterious(0) probably_damaging(0.997) TCGA-WE-A8K6-06 7 103301932 103301932 C T RELN Silent p.T444T 0.43 TCGA-WE-A8K6-06 7 11485757 11485757 G A THSD7A Missense_Mutation p.R999C 0.44 deleterious(0.01) probably_damaging(0.972) TCGA-WE-A8K6-06 7 116859170 116859170 G A ST7 Missense_Mutation p.G480R 0.41 deleterious(0) probably_damaging(0.992) TCGA-WE-A8K6-06 7 117180254 117180254 C T CFTR Missense_Mutation p.P324S 0.33 tolerated(0.17) benign(0.247) TCGA-WE-A8K6-06 7 128415647 128415647 C T OPN1SW Silent p.R66R 0.47 TCGA-WE-A8K6-06 7 128415648 128415648 C T OPN1SW Missense_Mutation p.R66Q 0.47 deleterious(0.04) benign(0.187) TCGA-WE-A8K6-06 7 139305198 139305198 G A HIPK2 Silent p.S577S 0.36 TCGA-WE-A8K6-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-WE-A8K6-06 7 142829227 142829227 C T PIP Silent p.L6L 0.39 TCGA-WE-A8K6-06 7 142880733 142880733 G A TAS2R39 Silent p.R74R 0.46 TCGA-WE-A8K6-06 7 148921592 148921592 C T ZNF282 Silent p.I623I 0.36 TCGA-WE-A8K6-06 7 150325194 150325194 C T GIMAP6 Silent p.R164R 0.44 TCGA-WE-A8K6-06 7 150696345 150696345 G A NOS3 Missense_Mutation p.E342K 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8K6-06 7 156450863 156450863 C T RNF32 Silent p.T164T 0.44 TCGA-WE-A8K6-06 7 157926685 157926685 C T PTPRN2 Missense_Mutation p.A414T 0.37 tolerated(0.26) benign(0.008) TCGA-WE-A8K6-06 7 17379084 17379084 C T AHR Silent p.N545N 0.34 TCGA-WE-A8K6-06 7 17379085 17379085 C T AHR Silent p.L546L 0.34 TCGA-WE-A8K6-06 7 38356708 38356708 A C TRGV9 Missense_Mutation p.D92E 0.22 tolerated(0.82) benign(0.019) TCGA-WE-A8K6-06 7 45006335 45006335 C T MYO1G Missense_Mutation p.E629K 0.39 deleterious(0) probably_damaging(0.998) TCGA-WE-A8K6-06 7 45006336 45006336 C T MYO1G Silent p.L628L 0.38 TCGA-WE-A8K6-06 7 57188072 57188072 C T ZNF479 Silent p.E350E 0.38 TCGA-WE-A8K6-06 7 57188858 57188858 A T ZNF479 Silent p.V88V 0.42 TCGA-WE-A8K6-06 7 66420678 66420678 C T TMEM248 3'UTR 0.32 TCGA-WE-A8K6-06 7 72645899 72645899 C T NCF1B RNA 0.32 TCGA-WE-A8K6-06 7 82586172 82586172 G A PCLO Missense_Mutation p.S1366F 0.56 unknown(0) TCGA-WE-A8K6-06 7 86468977 86468977 G A GRM3 Missense_Mutation p.R716K 0.43 tolerated(1) benign(0.023) TCGA-WE-A8K6-06 7 86493793 86493793 G A GRM3 3'UTR 0.48 TCGA-WE-A8K6-06 7 889586 889586 C T SUN1 Intron 0.33 TCGA-WE-A8K6-06 7 97851052 97851052 G T TECPR1 Nonsense_Mutation p.Y1026* 0.38 TCGA-WE-A8K6-06 8 123965713 123965713 C T ZHX2 Missense_Mutation p.P655S 0.65 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K6-06 8 131964145 131964145 G A ADCY8 Missense_Mutation p.R404W 0.28 deleterious(0) possibly_damaging(0.895) TCGA-WE-A8K6-06 8 133146540 133146540 G A KCNQ3 Missense_Mutation p.P599L 0.52 deleterious(0.01) probably_damaging(1) TCGA-WE-A8K6-06 8 144947191 144947191 G A EPPK1 Silent p.A77A 0.34 TCGA-WE-A8K6-06 8 23709024 23709024 C T STC1 Silent p.E94E 0.78 TCGA-WE-A8K6-06 8 41547801 41547801 C T ANK1 Missense_Mutation p.E1391K 0.33 tolerated(0.48) benign(0.077) TCGA-WE-A8K6-06 8 42812288 42812288 C T HOOK3 Missense_Mutation p.L174F 0.34 tolerated(0.83) probably_damaging(0.998) TCGA-WE-A8K6-06 8 61767069 61767069 C T CHD7 Missense_Mutation p.S2308L 0.31 probably_damaging(0.945) TCGA-WE-A8K6-06 8 6335112 6335112 T C MCPH1 Intron 0.84 TCGA-WE-A8K6-06 8 67062683 67062683 G A TRIM55 Missense_Mutation p.E323K 0.35 tolerated(0.19) benign(0.011) TCGA-WE-A8K6-06 8 67086827 67086827 G A TRIM55 Silent p.%3D 0.62 TCGA-WE-A8K6-06 8 77617749 77617749 G T ZFHX4 Missense_Mutation p.D476Y 0.14 probably_damaging(0.934) TCGA-WE-A8K6-06 8 95178024 95178024 G A CDH17 Missense_Mutation p.P416L 0.62 deleterious(0) possibly_damaging(0.493) TCGA-WE-A8K6-06 8 95802126 95802126 C T DPY19L4 Silent p.S720S 0.53 TCGA-WE-A8K6-06 9 113703763 113703763 G A LPAR1 Missense_Mutation p.S244F 0.90 deleterious(0) probably_damaging(0.999) TCGA-WE-A8K6-06 9 131898863 131898863 C T PPP2R4 Missense_Mutation p.S225L 0.82 deleterious(0) probably_damaging(0.912) TCGA-WE-A8K6-06 9 132084143 132084143 C G C9orf106 RNA 0.79 TCGA-WE-A8K6-06 9 90501034 90501034 C T SPATA31E1 Silent p.G544G 0.87 TCGA-WE-A8K6-06 9 95841781 95841781 G A SUSD3 Missense_Mutation p.D152N 0.76 tolerated(0.1) benign(0.07) TCGA-WE-A8K6-06 9 96054653 96054653 C T WNK2 Missense_Mutation p.S1704F 0.84 unknown(0) TCGA-WE-A8K6-06 X 100509452 100509452 C T DRP2 Silent p.T672T 0.42 TCGA-WE-A8K6-06 X 13635946 13635946 G A EGFL6 Silent p.K292K 0.50 TCGA-WE-A8K6-06 X 142596613 142596613 G A SPANXN3 3'UTR 0.90 TCGA-WE-A8K6-06 X 73063712 73063712 G A XIST RNA 0.40 TCGA-WE-A8ZM-06 10 27539239 27539239 G A RP11-85G18.6 RNA 0.13 TCGA-WE-A8ZM-06 10 46999894 46999894 G A GPRIN2 Silent p.Q338Q 0.15 TCGA-WE-A8ZM-06 10 94817980 94817980 G T EXOC6 Missense_Mutation p.K761N 0.29 deleterious(0) benign(0.098) TCGA-WE-A8ZM-06 11 17409720 17409720 C G KCNJ11 5'UTR 0.62 TCGA-WE-A8ZM-06 11 17416767 17416767 C T ABCC8 Missense_Mutation p.E1455K 0.29 deleterious(0) probably_damaging(0.928) TCGA-WE-A8ZM-06 11 17547938 17547938 C T USH1C Silent p.K210K 0.27 TCGA-WE-A8ZM-06 11 61076491 61076491 T C DDB1 Silent p.E875E 0.46 TCGA-WE-A8ZM-06 12 113332402 113332402 G A RPH3A Missense_Mutation p.G599R 0.42 deleterious(0) probably_damaging(0.924) TCGA-WE-A8ZM-06 12 133252698 133252698 G A POLE Silent p.V334V 0.32 TCGA-WE-A8ZM-06 12 50860791 50860791 A G LARP4 Missense_Mutation p.D478G 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZM-06 12 54936557 54936557 G A NCKAP1L 3'UTR 0.25 TCGA-WE-A8ZM-06 12 56094736 56094736 G A ITGA7 Missense_Mutation p.S206F 0.50 deleterious(0) possibly_damaging(0.776) TCGA-WE-A8ZM-06 12 57588195 57588195 C T LRP1 Silent p.P2659P 0.45 TCGA-WE-A8ZM-06 12 62986397 62986398 - T MON2 Frame_Shift_Ins p.L1675Ffs*21 0.36 TCGA-WE-A8ZM-06 12 72004496 72004496 A G ZFC3H1 Silent p.L1937L 0.57 TCGA-WE-A8ZM-06 12 8212589 8212589 T G C3AR1 Missense_Mutation p.T65P 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-WE-A8ZM-06 13 29600623 29600623 G A MTUS2 Silent p.G606G 0.27 TCGA-WE-A8ZM-06 13 77672270 77672270 G T MYCBP2 Missense_Mutation p.L2969I 0.58 probably_damaging(0.929) TCGA-WE-A8ZM-06 14 22671208 22671208 C T TRAV26-2 Silent p.I91I 0.10 TCGA-WE-A8ZM-06 14 68252931 68252931 T A ZFYVE26 Silent p.V1013V 0.61 TCGA-WE-A8ZM-06 14 77275726 77275726 A G ANGEL1 Missense_Mutation p.W109R 0.60 tolerated(0.06) benign(0.063) TCGA-WE-A8ZM-06 14 92102812 92102812 T G CATSPERB Missense_Mutation p.K567Q 0.22 tolerated(0.13) probably_damaging(0.962) TCGA-WE-A8ZM-06 15 41279358 41279358 T C INO80 Missense_Mutation p.K1255E 0.62 deleterious(0) probably_damaging(0.952) TCGA-WE-A8ZM-06 15 75668183 75668183 A C SIN3A Silent p.R1138R 0.09 TCGA-WE-A8ZM-06 15 90226634 90226634 G A PEX11A Missense_Mutation p.P240S 0.16 deleterious(0) probably_damaging(0.959) TCGA-WE-A8ZM-06 15 90226736 90226736 G C PEX11A Missense_Mutation p.L206V 0.18 tolerated(0.16) possibly_damaging(0.472) TCGA-WE-A8ZM-06 15 90226766 90226766 G C PEX11A Missense_Mutation p.L196V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZM-06 15 90226968 90226968 G C PEX11A Nonsense_Mutation p.Y128* 0.22 TCGA-WE-A8ZM-06 16 29998148 29998148 C T TAOK2 Missense_Mutation p.P852L 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-WE-A8ZM-06 16 61891091 61891091 C T CDH8 Missense_Mutation p.G200E 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8ZM-06 16 70162997 70162997 T A PDPR Silent p.L193L 0.29 TCGA-WE-A8ZM-06 16 70572349 70572349 A G SF3B3 Missense_Mutation p.T317A 0.23 tolerated(0.47) benign(0.084) TCGA-WE-A8ZM-06 16 84065555 84065555 A C SLC38A8 Silent p.A183A 0.45 TCGA-WE-A8ZM-06 17 1577143 1577143 T A PRPF8 Missense_Mutation p.T1115S 0.45 tolerated(0.61) benign(0.019) TCGA-WE-A8ZM-06 17 16075211 16075211 A T NCOR1 Missense_Mutation p.V114D 0.55 possibly_damaging(0.815) TCGA-WE-A8ZM-06 17 29661898 29661898 G A NF1 Nonsense_Mutation p.W1952* 0.74 TCGA-WE-A8ZM-06 17 30533936 30533936 A T RHOT1 Missense_Mutation p.D475V 0.43 deleterious(0) possibly_damaging(0.568) TCGA-WE-A8ZM-06 17 30696632 30696632 C T ZNF207 Missense_Mutation p.H447Y 0.23 tolerated_low_confidence(0.15) unknown(0) TCGA-WE-A8ZM-06 17 46621989 46621989 G A HOXB2 Silent p.F95F 0.37 TCGA-WE-A8ZM-06 18 31311933 31311933 T A ASXL3 Missense_Mutation p.M294K 0.34 possibly_damaging(0.751) TCGA-WE-A8ZM-06 18 59221656 59221656 G A CDH20 Missense_Mutation p.V712M 0.78 tolerated(0.22) probably_damaging(0.999) TCGA-WE-A8ZM-06 18 9524699 9524699 G A RALBP1 Silent p.T387T 0.36 TCGA-WE-A8ZM-06 19 10335523 10335523 T G S1PR2 Missense_Mutation p.Y20S 0.21 deleterious(0) benign(0.342) TCGA-WE-A8ZM-06 19 12805698 12805698 C T FBXW9 Missense_Mutation p.R155H 0.92 tolerated(0.82) benign(0.009) TCGA-WE-A8ZM-06 19 43922517 43922517 T C TEX101 Silent p.L258L 0.31 TCGA-WE-A8ZM-06 19 52934730 52934730 G A ZNF534 Translation_Start_Site p.M1? 0.28 deleterious(0) benign(0.107) TCGA-WE-A8ZM-06 19 55481665 55481665 T G NLRP2 Splice_Site p.X94_splice 0.16 TCGA-WE-A8ZM-06 19 9007507 9007507 G A MUC16 Missense_Mutation p.S13154F 0.26 possibly_damaging(0.502) TCGA-WE-A8ZM-06 19 9061072 9061072 C T MUC16 Missense_Mutation p.G8792S 0.34 unknown(0) TCGA-WE-A8ZM-06 1 158609376 158609376 C T SPTA1 Missense_Mutation p.R1659Q 0.44 tolerated(0.11) benign(0.161) TCGA-WE-A8ZM-06 1 183072489 183072489 C A LAMC1 Missense_Mutation p.R149S 0.26 deleterious(0) probably_damaging(1) TCGA-WE-A8ZM-06 1 42046499 42046499 G A HIVEP3 Nonsense_Mutation p.Q1324* 0.33 TCGA-WE-A8ZM-06 20 32369100 32369100 T G ZNF341 Missense_Mutation p.C535W 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8ZM-06 20 33590871 33590871 G A TRPC4AP 3'UTR 0.49 TCGA-WE-A8ZM-06 20 58342292 58342292 T G PHACTR3 Missense_Mutation p.L198R 0.25 tolerated(0.56) benign(0.312) TCGA-WE-A8ZM-06 20 61143462 61143462 T A C20orf166 5'Flank 0.14 TCGA-WE-A8ZM-06 22 23653971 23653971 C T BCR Silent p.R1090R 0.10 TCGA-WE-A8ZM-06 22 38014555 38014555 T - GGA1 Splice_Site p.X101_splice 0.30 TCGA-WE-A8ZM-06 2 108488799 108488799 C T RGPD4 Missense_Mutation p.R1447C 0.32 deleterious(0.01) possibly_damaging(0.601) TCGA-WE-A8ZM-06 2 108910205 108910205 A C SULT1C2 Missense_Mutation p.N28H 0.30 tolerated(0.44) possibly_damaging(0.831) TCGA-WE-A8ZM-06 2 141665503 141665503 T G LRP1B Missense_Mutation p.K1155Q 0.50 benign(0.007) TCGA-WE-A8ZM-06 2 162087785 162087785 A G TANK Missense_Mutation p.D275G 0.47 deleterious(0.01) possibly_damaging(0.488) TCGA-WE-A8ZM-06 2 203807604 203807604 T G CARF Missense_Mutation p.S74A 0.32 tolerated_low_confidence(0.1) benign(0.167) TCGA-WE-A8ZM-06 2 220333878 220333878 C A SPEG Missense_Mutation p.S1164R 0.48 possibly_damaging(0.691) TCGA-WE-A8ZM-06 2 228563852 228563852 G C SLC19A3 Silent p.P193P 0.80 TCGA-WE-A8ZM-06 2 234678330 234678330 G A UGT1A10 Intron 0.27 TCGA-WE-A8ZM-06 2 242179405 242179405 C T HDLBP Missense_Mutation p.D768N 0.53 deleterious(0.01) possibly_damaging(0.718) TCGA-WE-A8ZM-06 2 26700545 26700545 C T OTOF Missense_Mutation p.V763I 0.27 deleterious(0.02) benign(0.069) TCGA-WE-A8ZM-06 2 7036145 7036145 C G RSAD2 3'UTR 0.52 TCGA-WE-A8ZM-06 2 90109008 90109008 C T IGKV6D-41 Silent p.F91F 0.36 TCGA-WE-A8ZM-06 3 15719860 15719860 T C ANKRD28 Missense_Mutation p.T825A 0.48 tolerated(0.06) probably_damaging(0.976) TCGA-WE-A8ZM-06 3 167761224 167761224 T A GOLIM4 Nonsense_Mutation p.K154* 0.52 TCGA-WE-A8ZM-06 3 21462668 21462668 T G ZNF385D 3'UTR 0.44 TCGA-WE-A8ZM-06 3 64666926 64666926 G A ADAMTS9 Silent p.S210S 0.49 TCGA-WE-A8ZM-06 3 98541085 98541085 C G DCBLD2 Missense_Mutation p.V273L 0.61 tolerated(0.05) possibly_damaging(0.546) TCGA-WE-A8ZM-06 4 109784531 109784531 C T COL25A1 Missense_Mutation p.E366K 0.24 tolerated(0.15) possibly_damaging(0.634) TCGA-WE-A8ZM-06 4 146061129 146061129 G A OTUD4 Nonsense_Mutation p.R635* 0.36 TCGA-WE-A8ZM-06 4 55972082 55972082 G A KDR Missense_Mutation p.A521V 0.34 tolerated(0.28) benign(0.02) TCGA-WE-A8ZM-06 4 68358604 68358604 A T CENPC Missense_Mutation p.L801H 0.19 tolerated(0.2) possibly_damaging(0.737) TCGA-WE-A8ZM-06 5 140794423 140794423 G A PCDHGA10 Missense_Mutation p.D561N 0.40 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-WE-A8ZM-06 5 31526534 31526534 G C DROSHA Missense_Mutation p.P169R 0.35 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-WE-A8ZM-06 5 35779222 35779222 A G SPEF2 Silent p.T1407T 0.38 TCGA-WE-A8ZM-06 5 79855600 79855600 T G ANKRD34B Missense_Mutation p.Q80P 0.40 deleterious(0) probably_damaging(1) TCGA-WE-A8ZM-06 5 90144486 90144486 T C GPR98 Silent p.S5684S 0.33 TCGA-WE-A8ZM-06 6 29692105 29692105 A G HLA-F Missense_Mutation p.T164A 0.29 deleterious_low_confidence(0.01) benign(0.03) TCGA-WE-A8ZM-06 6 30672687 30672687 T C MDC1 Missense_Mutation p.T1425A 0.16 tolerated(0.24) benign(0.002) TCGA-WE-A8ZM-06 6 30864603 30864603 C T DDR1 Silent p.L610L 0.33 TCGA-WE-A8ZM-06 6 32783045 32783045 C A HLA-DOB Missense_Mutation p.G46V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-WE-A8ZM-06 6 55300297 55300297 T G HMGCLL1 3'UTR 0.24 TCGA-WE-A8ZM-06 6 57048687 57048687 A G BAG2 Missense_Mutation p.H112R 0.30 tolerated(0.88) benign(0.002) TCGA-WE-A8ZM-06 6 7584346 7584346 G A DSP Missense_Mutation p.R2284Q 0.21 probably_damaging(0.991) TCGA-WE-A8ZM-06 7 117865053 117865053 A C ANKRD7 Missense_Mutation p.K57Q 0.85 deleterious(0.04) possibly_damaging(0.597) TCGA-WE-A8ZM-06 7 150840623 150840623 G T AGAP3 Silent p.R823R 0.10 TCGA-WE-A8ZM-06 7 156469138 156469138 G C RNF32 Missense_Mutation p.C293S 0.51 deleterious(0.02) possibly_damaging(0.474) TCGA-WE-A8ZM-06 7 156469341 156469341 G A RNF32 Missense_Mutation p.E361K 0.47 tolerated(0.35) benign(0.012) TCGA-WE-A8ZM-06 7 20687654 20687654 G A ABCB5 Missense_Mutation p.E387K 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-WE-A8ZM-06 7 5662686 5662686 G A RNF216 Silent p.F859F 0.23 TCGA-WE-A8ZM-06 8 101074929 101074930 - TA RGS22 Frame_Shift_Ins p.L469Tfs*13 0.16 TCGA-WE-A8ZM-06 8 139190809 139190809 G C FAM135B Missense_Mutation p.T333S 0.11 tolerated(0.54) benign(0.034) TCGA-WE-A8ZM-06 8 67813457 67813457 A C MCMDC2 Missense_Mutation p.K548T 0.10 deleterious(0.02) possibly_damaging(0.82) TCGA-WE-A8ZM-06 8 92999173 92999173 A C RUNX1T1 Missense_Mutation p.M351R 0.11 tolerated(0.12) benign(0.084) TCGA-WE-A8ZM-06 9 101787232 101787232 C T COL15A1 Missense_Mutation p.P644L 0.62 tolerated(0.1) possibly_damaging(0.5) TCGA-WE-A8ZM-06 9 106882392 106882392 A G SMC2 Missense_Mutation p.E694G 0.88 deleterious(0.02) benign(0.021) TCGA-WE-A8ZM-06 9 115805408 115805408 G A ZFP37 Missense_Mutation p.A497V 0.22 deleterious(0) possibly_damaging(0.874) TCGA-WE-A8ZM-06 X 119410746 119410746 C T TMEM255A Silent p.K247K 0.90 TCGA-WE-A8ZM-06 X 18643287 18643287 A T CDKL5 Nonsense_Mutation p.K806* 0.47 TCGA-WE-A8ZN-06 10 115372051 115372051 G A NRAP Missense_Mutation p.S1147F 0.18 tolerated(0.68) benign(0.418) TCGA-WE-A8ZN-06 10 125601954 125601954 T C CPXM2 Silent p.R188R 0.30 TCGA-WE-A8ZN-06 10 126523292 126523292 C T FAM175B Missense_Mutation p.P334S 0.23 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 10 15145739 15145739 G A RPP38 Missense_Mutation p.M142I 0.23 tolerated(0.49) benign(0.001) TCGA-WE-A8ZN-06 10 71175999 71175999 G A TACR2 Silent p.S27S 0.36 TCGA-WE-A8ZN-06 10 72025855 72025855 G A NPFFR1 Silent p.T100T 0.23 TCGA-WE-A8ZN-06 10 90497475 90497475 C T LIPK Silent p.F251F 0.20 TCGA-WE-A8ZN-06 10 93237988 93237988 G A HECTD2 Missense_Mutation p.G211R 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-WE-A8ZN-06 11 100095536 100095536 T C CNTN5 Missense_Mutation p.L666P 0.48 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 11 100179143 100179143 G T CNTN5 Missense_Mutation p.E891D 0.13 tolerated(0.13) probably_damaging(0.999) TCGA-WE-A8ZN-06 11 111746801 111746801 A C FDXACB1 Missense_Mutation p.H240Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 11 19077810 19077810 C T MRGPRX2 Missense_Mutation p.G47E 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-WE-A8ZN-06 11 193121 193121 C T SCGB1C1 Silent p.L8L 0.22 TCGA-WE-A8ZN-06 11 209602 209602 G A RIC8A Missense_Mutation p.D110N 0.34 tolerated(0.12) benign(0.072) TCGA-WE-A8ZN-06 11 51515952 51515952 G A OR4C46 Missense_Mutation p.R224K 0.16 tolerated_low_confidence(0.68) benign(0.009) TCGA-WE-A8ZN-06 11 56344723 56344723 G A OR5M10 Nonsense_Mutation p.Q159* 0.25 TCGA-WE-A8ZN-06 11 58385299 58385299 C T ZFP91 3'UTR 0.31 TCGA-WE-A8ZN-06 11 5842271 5842271 C T OR52N2 Missense_Mutation p.R236C 0.26 deleterious(0.01) probably_damaging(0.927) TCGA-WE-A8ZN-06 11 60105358 60105358 C T MS4A6E Missense_Mutation p.L98F 0.32 tolerated(0.68) benign(0.091) TCGA-WE-A8ZN-06 11 64662799 64662799 C T ATG2A Missense_Mutation p.R1848Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZN-06 11 67225948 67225948 G A CABP4 Missense_Mutation p.R253Q 0.22 tolerated(0.41) benign(0.02) TCGA-WE-A8ZN-06 11 67254554 67254554 C T AIP Silent p.P59P 0.31 TCGA-WE-A8ZN-06 11 68703806 68703806 C T IGHMBP2 Missense_Mutation p.H620Y 0.11 deleterious(0) possibly_damaging(0.845) TCGA-WE-A8ZN-06 11 71259910 71259910 G A KRTAP5-9 Silent p.K69K 0.11 TCGA-WE-A8ZN-06 11 77920589 77920589 C - USP35 Frame_Shift_Del p.S563* 0.13 TCGA-WE-A8ZN-06 11 7847260 7847260 C T OR5P3 Missense_Mutation p.R87K 0.21 tolerated(0.98) benign(0.003) TCGA-WE-A8ZN-06 11 85445018 85445018 T G SYTL2 Missense_Mutation p.T451P 0.76 tolerated(0.32) benign(0.002) TCGA-WE-A8ZN-06 11 86159298 86159298 C T ME3 Splice_Site p.X378_splice 0.13 TCGA-WE-A8ZN-06 11 8942908 8942908 C T C11orf16 Silent p.R453R 0.25 TCGA-WE-A8ZN-06 11 93088610 93088610 G A CCDC67 Missense_Mutation p.D35N 0.15 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 11 93819263 93819263 G A HEPHL1 Missense_Mutation p.G663E 0.18 tolerated(0.06) probably_damaging(1) TCGA-WE-A8ZN-06 12 106460652 106460652 G A NUAK1 Silent p.S638S 0.32 TCGA-WE-A8ZN-06 12 113545928 113545928 C T RASAL1 Missense_Mutation p.D493N 0.18 tolerated(0.1) possibly_damaging(0.628) TCGA-WE-A8ZN-06 12 122862274 122862274 G A CLIP1 Missense_Mutation p.R107W 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 12 21997802 21997802 G A ABCC9 Silent p.F1048F 0.17 TCGA-WE-A8ZN-06 12 57437889 57437889 C A MYO1A Splice_Site p.X248_splice 0.23 TCGA-WE-A8ZN-06 12 8051648 8051648 G A NANOGP1 RNA 0.27 TCGA-WE-A8ZN-06 12 94654546 94654547 - CA PLXNC1 Frame_Shift_Ins p.R1127Sfs*36 0.21 TCGA-WE-A8ZN-06 12 97087580 97087580 C T C12orf55 Silent p.I2115I 0.17 TCGA-WE-A8ZN-06 13 49913872 49913872 C T CAB39L Missense_Mutation p.E211K 0.16 tolerated(0.38) benign(0.009) TCGA-WE-A8ZN-06 13 95858891 95858891 G A ABCC4 Silent p.F352F 0.27 TCGA-WE-A8ZN-06 14 23282552 23282552 G A SLC7A7 Missense_Mutation p.P19L 0.22 deleterious(0.01) benign(0) TCGA-WE-A8ZN-06 14 77705973 77705973 C T TMEM63C Silent p.F278F 0.27 TCGA-WE-A8ZN-06 14 94708137 94708137 C T PPP4R4 Missense_Mutation p.P330L 0.19 tolerated(0.16) benign(0.017) TCGA-WE-A8ZN-06 14 94708263 94708263 C T PPP4R4 Missense_Mutation p.S372L 0.27 tolerated(0.4) benign(0.002) TCGA-WE-A8ZN-06 15 23331052 23331052 G A HERC2P2 RNA 0.18 TCGA-WE-A8ZN-06 15 25438533 25438533 G A SNORD115-11 3'Flank 0.24 TCGA-WE-A8ZN-06 15 33925301 33925301 A C RYR3 Missense_Mutation p.I1007L 0.23 possibly_damaging(0.833) TCGA-WE-A8ZN-06 15 35085591 35085591 G A ACTC1 Silent p.H103H 0.15 TCGA-WE-A8ZN-06 15 41192009 41192009 C T VPS18 Silent p.T331T 0.20 TCGA-WE-A8ZN-06 15 43897036 43897036 C T STRC Silent p.K1313K 0.53 TCGA-WE-A8ZN-06 15 45249106 45249106 G A C15orf43 Missense_Mutation p.G26E 0.14 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 15 54685342 54685342 G A UNC13C Missense_Mutation p.D1604N 0.17 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-WE-A8ZN-06 15 69072789 69072789 A C ANP32A Missense_Mutation p.D216E 0.39 tolerated_low_confidence(0.39) unknown(0) TCGA-WE-A8ZN-06 15 72190945 72190945 G A MYO9A Missense_Mutation p.P1300L 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.742) TCGA-WE-A8ZN-06 15 90444998 90444998 G A C15orf38 3'UTR 0.29 TCGA-WE-A8ZN-06 16 1270918 1270918 C T CACNA1H Missense_Mutation p.P2329L 0.28 tolerated_low_confidence(0.15) benign(0.011) TCGA-WE-A8ZN-06 16 19514798 19514798 G A GDE1 Silent p.H330H 0.27 TCGA-WE-A8ZN-06 16 28603754 28603754 C T SULT1A2 Missense_Mutation p.R202K 0.25 tolerated(0.19) benign(0.028) TCGA-WE-A8ZN-06 16 29108518 29108518 C T RRN3P2 RNA 0.10 TCGA-WE-A8ZN-06 16 31332936 31332936 C T ITGAM Missense_Mutation p.R665W 0.25 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZN-06 16 4924931 4924931 C T UBN1 Silent p.S840S 0.32 TCGA-WE-A8ZN-06 16 49433231 49433231 G A C16orf78 3'UTR 0.32 TCGA-WE-A8ZN-06 16 736805 736805 C T WDR24 Missense_Mutation p.R424Q 0.24 deleterious(0.01) possibly_damaging(0.756) TCGA-WE-A8ZN-06 16 75663354 75663354 C T KARS Missense_Mutation p.D532N 0.27 tolerated(0.13) probably_damaging(0.995) TCGA-WE-A8ZN-06 16 77465432 77465432 C T ADAMTS18 Silent p.R85R 0.20 TCGA-WE-A8ZN-06 16 815753 815753 G A MSLN Silent p.R286R 0.15 TCGA-WE-A8ZN-06 16 816923 816923 G A MSLN Missense_Mutation p.R479K 0.28 tolerated(1) benign(0.058) TCGA-WE-A8ZN-06 17 10400755 10400755 C T MYH1 Nonsense_Mutation p.W1460* 0.24 TCGA-WE-A8ZN-06 17 10431190 10431190 C T MYH2 Missense_Mutation p.G1249E 0.25 deleterious(0.02) benign(0.008) TCGA-WE-A8ZN-06 17 18042918 18042918 G A MYO15A Missense_Mutation p.R1735Q 0.29 unknown(0) TCGA-WE-A8ZN-06 17 21825446 21825446 C T FAM27L RNA 0.16 TCGA-WE-A8ZN-06 17 40500496 40500496 C T STAT3 Silent p.R13R 0.21 TCGA-WE-A8ZN-06 17 41063282 41063282 C T G6PC Missense_Mutation p.L305F 0.25 tolerated(0.17) benign(0.003) TCGA-WE-A8ZN-06 17 48618301 48618301 C A EPN3 Missense_Mutation p.T376N 0.20 tolerated(0.36) possibly_damaging(0.701) TCGA-WE-A8ZN-06 17 65186284 65186284 G A HELZ Missense_Mutation p.P249S 0.18 deleterious(0.05) probably_damaging(0.925) TCGA-WE-A8ZN-06 17 7094632 7094632 G A DLG4 Silent p.F717F 0.25 TCGA-WE-A8ZN-06 17 76201528 76201528 C T AFMID Silent p.F191F 0.24 TCGA-WE-A8ZN-06 17 8784986 8784986 C T PIK3R5 Silent p.V781V 0.22 TCGA-WE-A8ZN-06 17 9503409 9503409 A G WDR16 Missense_Mutation p.Y221C 0.26 deleterious(0.03) benign(0.147) TCGA-WE-A8ZN-06 18 29126539 29126539 C T DSG2 Missense_Mutation p.P1064S 0.12 tolerated(0.07) benign(0.111) TCGA-WE-A8ZN-06 18 61379826 61379826 G A SERPINB11 Missense_Mutation p.E86K 0.23 tolerated(0.1) benign(0.105) TCGA-WE-A8ZN-06 19 11134251 11134251 C T SMARCA4 Missense_Mutation p.R973W 0.24 probably_damaging(0.998) TCGA-WE-A8ZN-06 19 12924184 12924184 C T RNASEH2A Silent p.I268I 0.31 TCGA-WE-A8ZN-06 19 15052906 15052906 G A OR7C2 Silent p.V202V 0.23 TCGA-WE-A8ZN-06 19 16000503 16000503 C T CYP4F2 Silent p.E216E 0.23 TCGA-WE-A8ZN-06 19 19653776 19653776 C T CILP2 Silent p.Y324Y 0.25 TCGA-WE-A8ZN-06 19 41798300 41798300 G A HNRNPUL1 Missense_Mutation p.G384R 0.23 deleterious(0) unknown(0) TCGA-WE-A8ZN-06 19 43411107 43411107 C T PSG6 Missense_Mutation p.E403K 0.25 tolerated(0.19) possibly_damaging(0.466) TCGA-WE-A8ZN-06 19 4446858 4446858 C T UBXN6 Silent p.K225K 0.18 TCGA-WE-A8ZN-06 19 45976134 45976134 C T FOSB Missense_Mutation p.P294L 0.31 tolerated(0.48) probably_damaging(0.927) TCGA-WE-A8ZN-06 19 49184143 49184143 G A RN7SL345P 5'Flank 0.50 TCGA-WE-A8ZN-06 19 50334135 50334135 A G MED25 Silent p.A364A 0.29 TCGA-WE-A8ZN-06 19 50805004 50805004 C T MYH14 Silent p.I1852I 0.30 TCGA-WE-A8ZN-06 19 55739616 55739616 G A TMEM86B Missense_Mutation p.L81F 0.15 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 19 57647452 57647452 C T ZIM3 Missense_Mutation p.D85N 0.20 tolerated(0.41) benign(0.175) TCGA-WE-A8ZN-06 19 57647453 57647453 C T ZIM3 Silent p.G84G 0.20 TCGA-WE-A8ZN-06 19 9087009 9087009 C T MUC16 Silent p.E1602E 0.24 TCGA-WE-A8ZN-06 1 109801516 109801516 C T CELSR2 Missense_Mutation p.S1258F 0.43 deleterious(0) possibly_damaging(0.845) TCGA-WE-A8ZN-06 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.52 deleterious(0.01) benign(0.045) TCGA-WE-A8ZN-06 1 154560620 154560620 G A ADAR Silent p.L1000L 0.23 TCGA-WE-A8ZN-06 1 155004150 155004150 G A DCST2 Silent p.F213F 0.16 TCGA-WE-A8ZN-06 1 156146677 156146677 G A SEMA4A Silent p.G725G 0.22 TCGA-WE-A8ZN-06 1 182849694 182849694 C T DHX9 Missense_Mutation p.P859S 0.13 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZN-06 1 185269604 185269604 T C IVNS1ABP Missense_Mutation p.T403A 0.29 tolerated(0.38) benign(0.186) TCGA-WE-A8ZN-06 1 19433453 19433453 G A UBR4 Missense_Mutation p.P4038L 0.35 benign(0.027) TCGA-WE-A8ZN-06 1 216850783 216850783 G A ESRRG Missense_Mutation p.S41L 0.25 tolerated_low_confidence(0.07) benign(0.113) TCGA-WE-A8ZN-06 1 227192806 227192806 G A CDC42BPA Missense_Mutation p.R1587W 0.28 deleterious(0.03) possibly_damaging(0.571) TCGA-WE-A8ZN-06 1 234565421 234565421 A G TARBP1 Missense_Mutation p.V871A 0.19 tolerated(0.55) benign(0.001) TCGA-WE-A8ZN-06 1 241262011 241262011 G A RGS7 Missense_Mutation p.R44C 0.30 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZN-06 1 44134853 44134853 C T KDM4A Missense_Mutation p.P416S 0.27 tolerated(0.07) benign(0.015) TCGA-WE-A8ZN-06 1 45807779 45807779 G A TOE1 Silent p.K164K 0.24 TCGA-WE-A8ZN-06 1 45807780 45807780 G A TOE1 Splice_Site p.X164_splice 0.24 TCGA-WE-A8ZN-06 1 71512862 71512862 G A PTGER3 Silent p.F133F 0.41 TCGA-WE-A8ZN-06 20 23065204 23065204 G C CD93 Silent p.G542G 0.23 TCGA-WE-A8ZN-06 20 30408296 30408296 G A MYLK2 Silent p.R140R 0.18 TCGA-WE-A8ZN-06 20 34025259 34025259 C T GDF5 Silent p.R150R 0.18 TCGA-WE-A8ZN-06 20 61143484 61143484 G A C20orf166 5'Flank 0.27 TCGA-WE-A8ZN-06 20 62273531 62273531 T A STMN3 Missense_Mutation p.Y138F 0.26 tolerated(0.61) benign(0.062) TCGA-WE-A8ZN-06 21 41427717 41427717 C T DSCAM Missense_Mutation p.R1657Q 0.26 deleterious(0.05) probably_damaging(0.98) TCGA-WE-A8ZN-06 21 45949708 45949708 C T TSPEAR Missense_Mutation p.D255N 0.29 tolerated(0.08) benign(0.007) TCGA-WE-A8ZN-06 21 47856021 47856021 G T PCNT Missense_Mutation p.A2986S 0.20 benign(0.049) TCGA-WE-A8ZN-06 22 16287703 16287703 C T POTEH Missense_Mutation p.M61I 0.12 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8ZN-06 22 23596082 23596082 C T BCR Missense_Mutation p.S459L 0.21 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-WE-A8ZN-06 22 25289460 25289460 G A SGSM1 Silent p.A666A 0.18 TCGA-WE-A8ZN-06 22 36537222 36537222 C T APOL3 3'UTR 0.24 TCGA-WE-A8ZN-06 22 36716365 36716365 G A MYH9 Silent p.S304S 0.25 TCGA-WE-A8ZN-06 22 42141967 42141967 C T MEI1 Silent p.T539T 0.38 TCGA-WE-A8ZN-06 22 45929018 45929018 T G FBLN1 Missense_Mutation p.L207R 0.20 deleterious(0) possibly_damaging(0.902) TCGA-WE-A8ZN-06 2 113958768 113958768 G A PSD4 Missense_Mutation p.V983M 0.23 tolerated(0.06) possibly_damaging(0.472) TCGA-WE-A8ZN-06 2 131521383 131521383 G A AMER3 Missense_Mutation p.G580R 0.20 tolerated(1) benign(0.016) TCGA-WE-A8ZN-06 2 131521384 131521384 G A AMER3 Missense_Mutation p.G580E 0.18 tolerated(0.17) possibly_damaging(0.545) TCGA-WE-A8ZN-06 2 135744256 135744256 G A MAP3K19 Missense_Mutation p.S729L 0.28 tolerated(0.86) benign(0.004) TCGA-WE-A8ZN-06 2 161141345 161141345 G A RBMS1 Nonsense_Mutation p.R281* 0.21 TCGA-WE-A8ZN-06 2 175263026 175263026 C T SCRN3 Silent p.S5S 0.23 TCGA-WE-A8ZN-06 2 179427031 179427031 C T TTN Missense_Mutation p.G27943E 0.25 TCGA-WE-A8ZN-06 2 179455542 179455542 T G TTN Missense_Mutation p.T20304P 0.23 TCGA-WE-A8ZN-06 2 179621414 179621414 C T TTN Missense_Mutation p.E3597K 0.19 TCGA-WE-A8ZN-06 2 188210898 188210898 C T CALCRL 3'UTR 0.21 TCGA-WE-A8ZN-06 2 201478676 201478676 T C AOX1 Missense_Mutation p.I533T 0.25 tolerated(0.36) benign(0.001) TCGA-WE-A8ZN-06 2 204009748 204009748 G A NBEAL1 Missense_Mutation p.M1694I 0.26 deleterious(0) benign(0.354) TCGA-WE-A8ZN-06 2 204073917 204073917 G A NBEAL1 Missense_Mutation p.G2524S 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 2 233399901 233399901 C T CHRND Missense_Mutation p.T478M 0.23 tolerated(0.09) probably_damaging(0.973) TCGA-WE-A8ZN-06 2 241570050 241570050 G C GPR35 Silent p.V258V 0.22 TCGA-WE-A8ZN-06 2 26676256 26676256 G A DRC1 Silent p.L586L 0.33 TCGA-WE-A8ZN-06 2 29222236 29222236 C T FAM179A Missense_Mutation p.P110L 0.29 tolerated(0.44) benign(0) TCGA-WE-A8ZN-06 2 46611661 46611661 G T EPAS1 Silent p.R825R 0.19 TCGA-WE-A8ZN-06 2 68882462 68882462 C T PROKR1 Silent p.T312T 0.27 TCGA-WE-A8ZN-06 2 73161053 73161053 G A EMX1 Silent p.G281G 0.28 TCGA-WE-A8ZN-06 2 75104373 75104373 T A HK2 Missense_Mutation p.L319H 0.22 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZN-06 2 80085235 80085235 C T CTNNA2 Missense_Mutation p.S132F 0.28 tolerated(0.06) probably_damaging(0.933) TCGA-WE-A8ZN-06 2 80085236 80085236 C T CTNNA2 Silent p.S132S 0.27 TCGA-WE-A8ZN-06 2 89278244 89278244 G A IGKV3-7 Silent p.L31L 0.17 TCGA-WE-A8ZN-06 3 113676662 113676662 G A ZDHHC23 Intron 0.14 TCGA-WE-A8ZN-06 3 11888132 11888135 CACT - TAMM41 5'UTR 0.26 TCGA-WE-A8ZN-06 3 121630434 121630434 C T SLC15A2 Missense_Mutation p.L117F 0.19 deleterious(0) possibly_damaging(0.733) TCGA-WE-A8ZN-06 3 122002764 122002764 C T CASR Missense_Mutation p.L665F 0.22 deleterious(0.01) possibly_damaging(0.649) TCGA-WE-A8ZN-06 3 122964804 122964804 T A SEC22A Silent p.L200L 0.24 TCGA-WE-A8ZN-06 3 124420915 124420915 G A KALRN Nonsense_Mutation p.W979* 0.19 TCGA-WE-A8ZN-06 3 124420916 124420916 G A KALRN Nonsense_Mutation p.W979* 0.19 TCGA-WE-A8ZN-06 3 131418796 131418796 G A CPNE4 Missense_Mutation p.S130F 0.16 deleterious(0) benign(0.259) TCGA-WE-A8ZN-06 3 1415661 1415661 C T CNTN6 Missense_Mutation p.P667S 0.26 deleterious(0.02) benign(0.167) TCGA-WE-A8ZN-06 3 14755615 14755615 C T C3orf20 Missense_Mutation p.A421V 0.26 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZN-06 3 158254968 158254968 C T RSRC1 Missense_Mutation p.S247L 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 3 167031864 167031864 C T ZBBX Missense_Mutation p.E439K 0.21 tolerated(0.2) benign(0.093) TCGA-WE-A8ZN-06 3 167051700 167051700 G T ZBBX Missense_Mutation p.P201H 0.27 deleterious(0) possibly_damaging(0.788) TCGA-WE-A8ZN-06 3 169890373 169890373 G A PHC3 Missense_Mutation p.S103F 0.22 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZN-06 3 170198250 170198250 C T SLC7A14 Silent p.L607L 0.25 TCGA-WE-A8ZN-06 3 197665589 197665589 G A IQCG Silent p.I115I 0.27 TCGA-WE-A8ZN-06 3 38949462 38949462 G A SCN11A Missense_Mutation p.S484F 0.24 deleterious(0.02) possibly_damaging(0.59) TCGA-WE-A8ZN-06 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.33 deleterious(0) probably_damaging(0.962) TCGA-WE-A8ZN-06 3 48465427 48465427 G A PLXNB1 Silent p.F198F 0.44 TCGA-WE-A8ZN-06 3 48594200 48594200 G T PFKFB4 Missense_Mutation p.P4Q 0.15 benign(0.01) TCGA-WE-A8ZN-06 3 49162711 49162711 G A LAMB2 Missense_Mutation p.H899Y 0.28 tolerated(0.35) benign(0.021) TCGA-WE-A8ZN-06 3 52613149 52613149 G A PBRM1 Missense_Mutation p.H1127Y 0.26 tolerated(1) benign(0) TCGA-WE-A8ZN-06 3 58149152 58149152 C T FLNB Intron 0.31 TCGA-WE-A8ZN-06 3 97596414 97596414 C T CRYBG3 Missense_Mutation p.L178F 0.33 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 4 141484481 141484481 G A UCP1 Missense_Mutation p.L173F 0.25 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 4 62845468 62845468 G A LPHN3 Missense_Mutation p.G930E 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZN-06 5 101774343 101774343 G A SLCO6A1 Silent p.P418P 0.24 TCGA-WE-A8ZN-06 5 140187853 140187853 G A PCDHA4 Missense_Mutation p.E361K 0.22 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-WE-A8ZN-06 5 140773285 140773285 C T PCDHGA8 Missense_Mutation p.S302L 0.20 tolerated_low_confidence(0.2) benign(0.039) TCGA-WE-A8ZN-06 5 145435560 145435560 C T SH3RF2 Missense_Mutation p.P447S 0.19 tolerated(1) benign(0.135) TCGA-WE-A8ZN-06 5 154188023 154188023 G A LARP1 Silent p.R824R 0.28 TCGA-WE-A8ZN-06 5 36035892 36035892 C T UGT3A2 Missense_Mutation p.G494R 0.20 tolerated(0.09) probably_damaging(0.913) TCGA-WE-A8ZN-06 5 42718173 42718173 C T GHR Missense_Mutation p.P299S 0.20 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZN-06 5 75964667 75964667 A T IQGAP2 Silent p.I947I 0.30 TCGA-WE-A8ZN-06 5 80168983 80168983 C T MSH3 Missense_Mutation p.T1060I 0.24 deleterious(0.03) possibly_damaging(0.734) TCGA-WE-A8ZN-06 5 95764944 95764944 G A PCSK1 Silent p.I86I 0.30 TCGA-WE-A8ZN-06 6 133769251 133769251 G A EYA4 Missense_Mutation p.E71K 0.20 tolerated_low_confidence(0.21) benign(0.033) TCGA-WE-A8ZN-06 6 150240810 150240810 G A RAET1G Silent p.P76P 0.22 TCGA-WE-A8ZN-06 6 153043209 153043209 C T MYCT1 Missense_Mutation p.P177S 0.24 tolerated(0.16) probably_damaging(0.928) TCGA-WE-A8ZN-06 6 154567884 154567884 C T IPCEF1 Silent p.T29T 0.36 TCGA-WE-A8ZN-06 6 158924048 158924048 G A TULP4 Missense_Mutation p.R1118Q 0.26 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-WE-A8ZN-06 6 159461768 159461768 C T TAGAP Missense_Mutation p.E192K 0.29 deleterious(0) possibly_damaging(0.473) TCGA-WE-A8ZN-06 6 160239665 160239665 C T PNLDC1 Silent p.I401I 0.10 TCGA-WE-A8ZN-06 6 25983722 25983722 C T TRIM38 Missense_Mutation p.S402F 0.15 deleterious(0.04) benign(0.139) TCGA-WE-A8ZN-06 6 52137210 52137210 G A MCM3 Silent p.I617I 0.22 TCGA-WE-A8ZN-06 6 75834866 75834866 G A COL12A1 Missense_Mutation p.P2195L 0.20 probably_damaging(1) TCGA-WE-A8ZN-06 7 102614098 102614098 C T FBXL13 Intron 0.26 TCGA-WE-A8ZN-06 7 138203973 138203973 C T TRIM24 Missense_Mutation p.P224L 0.16 tolerated(0.06) possibly_damaging(0.874) TCGA-WE-A8ZN-06 7 138391406 138391406 G A ATP6V0A4 Missense_Mutation p.S829F 0.15 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZN-06 7 142460761 142460761 G A PRSS1 Missense_Mutation p.G212R 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 7 44561420 44561420 G A NPC1L1 Silent p.I948I 0.21 TCGA-WE-A8ZN-06 7 5540667 5540667 C T FBXL18 Silent p.R411R 0.19 TCGA-WE-A8ZN-06 7 74193761 74193761 G A NCF1 Missense_Mutation p.D130N 0.15 tolerated(0.17) benign(0.001) TCGA-WE-A8ZN-06 7 89753445 89753445 G A RP5-1121E10.2 5'Flank 0.17 TCGA-WE-A8ZN-06 8 110445445 110445445 G A PKHD1L1 Missense_Mutation p.E1114K 0.16 tolerated(0.06) benign(0.243) TCGA-WE-A8ZN-06 8 139164665 139164665 C T FAM135B Missense_Mutation p.D685N 0.23 deleterious(0) probably_damaging(1) TCGA-WE-A8ZN-06 8 17573350 17573350 C T MTUS1 Missense_Mutation p.G837D 0.31 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZN-06 8 23177416 23177416 G A LOXL2 Silent p.F484F 0.19 TCGA-WE-A8ZN-06 8 24253252 24253252 G A ADAMDEC1 Missense_Mutation p.G128E 0.15 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZN-06 8 30700635 30700635 C T TEX15 Missense_Mutation p.A1967T 0.25 tolerated(0.17) benign(0.007) TCGA-WE-A8ZN-06 8 41554266 41554266 G A ANK1 Missense_Mutation p.S929F 0.29 deleterious(0.01) probably_damaging(0.937) TCGA-WE-A8ZN-06 8 42232283 42232283 C T DKK4 Silent p.R137R 0.19 TCGA-WE-A8ZN-06 8 55534689 55534689 C T RP1 Nonsense_Mutation p.Q210* 0.16 TCGA-WE-A8ZN-06 8 70978495 70978495 C T PRDM14 Silent p.G386G 0.18 TCGA-WE-A8ZN-06 8 87229987 87229987 G A SLC7A13 Silent p.T297T 0.21 TCGA-WE-A8ZN-06 9 114873950 114873950 G A SUSD1 Silent p.I385I 0.30 TCGA-WE-A8ZN-06 9 125281758 125281758 C T OR1J4 Silent p.F113F 0.21 TCGA-WE-A8ZN-06 9 131107547 131107547 C T SLC27A4 Missense_Mutation p.A92V 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-WE-A8ZN-06 9 2039581 2039581 C T SMARCA2 Silent p.I157I 0.40 TCGA-WE-A8ZN-06 9 34996413 34996413 C T DNAJB5 Silent p.F235F 0.20 TCGA-WE-A8ZN-06 9 79324603 79324603 C T PRUNE2 Missense_Mutation p.E863K 0.23 tolerated(0.12) benign(0.015) TCGA-WE-A8ZN-06 9 990393 990393 C T DMRT3 Silent p.L269L 0.22 TCGA-WE-A8ZN-06 X 151092581 151092581 C T MAGEA4 Missense_Mutation p.P149S 0.45 deleterious(0.03) possibly_damaging(0.73) TCGA-WE-A8ZN-06 X 17819507 17819507 G A RAI2 Silent p.G208G 0.33 TCGA-WE-A8ZN-06 X 65242618 65242618 C T VSIG4 Intron 0.57 TCGA-WE-A8ZO-06 10 116048901 116048901 C T VWA2 Missense_Mutation p.A592V 0.28 tolerated(0.08) benign(0.012) TCGA-WE-A8ZO-06 10 118969418 118969418 G A KCNK18 Missense_Mutation p.E255K 0.45 deleterious(0) possibly_damaging(0.905) TCGA-WE-A8ZO-06 10 124399674 124399674 G T DMBT1 Missense_Mutation p.W2225L 0.37 deleterious(0.01) possibly_damaging(0.587) TCGA-WE-A8ZO-06 10 128925932 128925932 G A DOCK1 Splice_Site p.X897_splice 0.36 TCGA-WE-A8ZO-06 10 43615127 43615127 C T RET Silent p.T847T 0.32 TCGA-WE-A8ZO-06 10 45799508 45799508 G A OR13A1 Silent p.F121F 0.38 TCGA-WE-A8ZO-06 10 50530730 50530730 C T C10orf71 Missense_Mutation p.S47F 0.41 deleterious(0.04) benign(0.066) TCGA-WE-A8ZO-06 10 50902578 50902578 C T C10orf53 Intron 0.40 TCGA-WE-A8ZO-06 10 52103686 52103686 C T SGMS1 Missense_Mutation p.M63I 0.34 tolerated(0.22) benign(0.004) TCGA-WE-A8ZO-06 10 63851968 63851968 A T ARID5B Nonsense_Mutation p.K916* 0.38 TCGA-WE-A8ZO-06 10 63852114 63852114 C T ARID5B Silent p.G964G 0.39 TCGA-WE-A8ZO-06 10 63852563 63852563 C T ARID5B Missense_Mutation p.P1114L 0.41 deleterious(0) probably_damaging(0.991) TCGA-WE-A8ZO-06 10 6506361 6506361 G A PRKCQ Silent p.N453N 0.41 TCGA-WE-A8ZO-06 10 68139013 68139013 C T CTNNA3 Silent p.R543R 0.39 TCGA-WE-A8ZO-06 10 75157999 75157999 G A ANXA7 Missense_Mutation p.P67S 0.40 deleterious(0.03) unknown(0) TCGA-WE-A8ZO-06 10 85991814 85991814 C T LRIT1 Missense_Mutation p.E581K 0.41 tolerated(0.56) benign(0.124) TCGA-WE-A8ZO-06 10 88446967 88446967 C T LDB3 Silent p.S277S 0.40 TCGA-WE-A8ZO-06 10 92509260 92509260 C T HTR7 Missense_Mutation p.A211T 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8ZO-06 10 93608266 93608266 C T TNKS2 Missense_Mutation p.P829S 0.40 tolerated(0.35) benign(0.021) TCGA-WE-A8ZO-06 10 98386579 98386579 C T PIK3AP1 Missense_Mutation p.D519N 0.45 tolerated(0.57) benign(0.03) TCGA-WE-A8ZO-06 10 99991338 99991338 C T R3HCC1L Missense_Mutation p.P619S 0.37 tolerated(0.08) benign(0.049) TCGA-WE-A8ZO-06 11 106680862 106680862 A C GUCY1A2 Missense_Mutation p.F517V 0.56 tolerated(0.17) benign(0.155) TCGA-WE-A8ZO-06 11 119205838 119205838 G A RNF26 Silent p.E2E 0.64 TCGA-WE-A8ZO-06 11 119549369 119549369 G A PVRL1 Silent p.I62I 0.44 TCGA-WE-A8ZO-06 11 124189215 124189215 C T OR8D2 Silent p.R293R 0.64 TCGA-WE-A8ZO-06 11 4870432 4870432 T C OR51S1 Missense_Mutation p.T3A 0.59 tolerated_low_confidence(0.21) benign(0.001) TCGA-WE-A8ZO-06 11 55321898 55321898 G A OR4C15 Missense_Mutation p.R39K 0.40 deleterious_low_confidence(0.03) benign(0.003) TCGA-WE-A8ZO-06 11 56954888 56954888 C T LRRC55 Silent p.F320F 0.74 TCGA-WE-A8ZO-06 11 58207532 58207532 G A OR5B12 Silent p.F31F 0.63 TCGA-WE-A8ZO-06 11 63137464 63137464 C T SLC22A9 5'UTR 0.64 TCGA-WE-A8ZO-06 11 67047168 67047168 C T ADRBK1 Silent p.F146F 0.77 TCGA-WE-A8ZO-06 11 67172938 67172938 G A TBC1D10C Silent p.G107G 0.76 TCGA-WE-A8ZO-06 11 82880833 82880833 C T PCF11 Silent p.F1152F 0.61 TCGA-WE-A8ZO-06 11 8414154 8414154 C T STK33 Missense_Mutation p.G483E 0.69 tolerated_low_confidence(0.5) benign(0.001) TCGA-WE-A8ZO-06 11 85626487 85626487 G A CCDC83 Missense_Mutation p.G305R 0.68 deleterious(0) probably_damaging(0.991) TCGA-WE-A8ZO-06 11 88300709 88300709 C T GRM5 Missense_Mutation p.M714I 0.78 tolerated(0.21) benign(0.012) TCGA-WE-A8ZO-06 12 104069779 104069779 C T STAB2 Missense_Mutation p.P876S 0.78 tolerated(0.24) benign(0.011) TCGA-WE-A8ZO-06 12 105556567 105556567 A C KIAA1033 Missense_Mutation p.K1034T 0.78 deleterious(0.02) probably_damaging(0.951) TCGA-WE-A8ZO-06 12 18865892 18865892 C T PLCZ1 Missense_Mutation p.E200K 0.79 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 12 1992137 1992137 C T CACNA2D4 Missense_Mutation p.D461N 0.50 deleterious(0) possibly_damaging(0.774) TCGA-WE-A8ZO-06 12 41961620 41961620 A T PDZRN4 Missense_Mutation p.E501D 0.84 tolerated(1) benign(0.289) TCGA-WE-A8ZO-06 12 43925926 43925926 C T ADAMTS20 Missense_Mutation p.E176K 0.84 deleterious(0.02) possibly_damaging(0.767) TCGA-WE-A8ZO-06 12 46242662 46242662 C T ARID2 Nonsense_Mutation p.R542* 0.78 TCGA-WE-A8ZO-06 12 58218083 58218083 G A CTDSP2 Missense_Mutation p.P144L 0.78 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 12 66909535 66909535 C T GRIP1 Silent p.T196T 0.86 TCGA-WE-A8ZO-06 12 71531793 71531793 C T TSPAN8 Silent p.L128L 0.71 TCGA-WE-A8ZO-06 12 80771721 80771721 G A OTOGL Missense_Mutation p.E2310K 0.76 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZO-06 12 86373933 86373933 C T MGAT4C Missense_Mutation p.D191N 0.86 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 12 95603314 95603314 G A FGD6 Silent p.F582F 0.77 TCGA-WE-A8ZO-06 13 101287346 101287346 G A TMTC4 Missense_Mutation p.P436S 0.37 tolerated(0.21) possibly_damaging(0.893) TCGA-WE-A8ZO-06 13 113481064 113481064 C T ATP11A Silent p.I360I 0.39 TCGA-WE-A8ZO-06 13 113772743 113772743 C T F7 Silent p.S274S 0.27 TCGA-WE-A8ZO-06 13 19997193 19997193 C T TPTE2 3'UTR 0.38 TCGA-WE-A8ZO-06 13 26789560 26789560 G A RNF6 Silent p.I153I 0.41 TCGA-WE-A8ZO-06 13 29600675 29600675 G A MTUS2 Missense_Mutation p.G624R 0.31 deleterious(0) possibly_damaging(0.9) TCGA-WE-A8ZO-06 13 31718055 31718055 A C HSPH1 Missense_Mutation p.N530K 0.38 tolerated(0.88) benign(0.243) TCGA-WE-A8ZO-06 14 104452572 104452572 G A TDRD9 Missense_Mutation p.E344K 0.28 deleterious(0.03) benign(0.206) TCGA-WE-A8ZO-06 14 106621981 106621981 G A IGHV3-16 Silent p.I88I 0.42 TCGA-WE-A8ZO-06 14 19553678 19553678 G A POTEG Missense_Mutation p.D88N 0.24 tolerated_low_confidence(0.18) benign(0.005) TCGA-WE-A8ZO-06 14 20295718 20295718 C T OR4N2 Silent p.I37I 0.40 TCGA-WE-A8ZO-06 14 20443888 20443888 C T OR4K15 Missense_Mutation p.L71F 0.34 tolerated(0.19) possibly_damaging(0.873) TCGA-WE-A8ZO-06 14 20444378 20444378 C T OR4K15 Missense_Mutation p.S234F 0.42 deleterious(0.01) possibly_damaging(0.866) TCGA-WE-A8ZO-06 14 22133789 22133789 C T OR4E2 Missense_Mutation p.R165C 0.38 deleterious(0.03) probably_damaging(0.973) TCGA-WE-A8ZO-06 14 22236783 22236783 G A TRAV6 Silent p.L16L 0.37 TCGA-WE-A8ZO-06 14 23842254 23842254 G A IL25 5'UTR 0.30 TCGA-WE-A8ZO-06 14 24656655 24656655 G A IPO4 Missense_Mutation p.S180F 0.35 deleterious(0.02) probably_damaging(0.947) TCGA-WE-A8ZO-06 14 31344274 31344274 T G COCH Missense_Mutation p.L16R 0.50 tolerated(0.08) possibly_damaging(0.766) TCGA-WE-A8ZO-06 14 42356795 42356795 C T LRFN5 Missense_Mutation p.P323S 0.36 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 14 59112210 59112210 A G DACT1 Missense_Mutation p.N290S 0.42 tolerated(0.29) benign(0.002) TCGA-WE-A8ZO-06 14 60063364 60063364 G A RTN1 3'UTR 0.30 TCGA-WE-A8ZO-06 14 64988918 64988918 T A ZBTB1 Missense_Mutation p.D232E 0.45 tolerated(0.99) probably_damaging(0.97) TCGA-WE-A8ZO-06 14 79432419 79432419 G A NRXN3 Missense_Mutation p.G443E 0.31 deleterious(0) probably_damaging(0.982) TCGA-WE-A8ZO-06 14 93813674 93813674 C T COX8C Silent p.L20L 0.36 TCGA-WE-A8ZO-06 14 94914766 94914766 G A SERPINA11 Missense_Mutation p.H116Y 0.37 tolerated(0.05) possibly_damaging(0.575) TCGA-WE-A8ZO-06 14 96706712 96706712 T C BDKRB2 Intron 0.39 TCGA-WE-A8ZO-06 15 20488893 20488893 G A CHEK2P2 RNA 0.13 TCGA-WE-A8ZO-06 15 23889278 23889278 G A MAGEL2 Silent p.L601L 0.28 TCGA-WE-A8ZO-06 15 27184461 27184461 C T GABRA5 Intron 0.34 TCGA-WE-A8ZO-06 15 33795878 33795878 C T RYR3 Missense_Mutation p.S73F 0.20 probably_damaging(0.982) TCGA-WE-A8ZO-06 15 40557040 40557040 C T PAK6 Silent p.F18F 0.43 TCGA-WE-A8ZO-06 15 40702852 40702852 C T IVD Silent p.G107G 0.30 TCGA-WE-A8ZO-06 15 48063555 48063555 C T SEMA6D Missense_Mutation p.P932L 0.40 deleterious(0) probably_damaging(0.989) TCGA-WE-A8ZO-06 15 54007404 54007404 G A WDR72 Missense_Mutation p.S167F 0.30 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 15 54308009 54308009 C T UNC13C Missense_Mutation p.P970L 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 15 72338106 72338106 C T MYO9A Missense_Mutation p.G267R 0.42 deleterious(0) probably_damaging(0.927) TCGA-WE-A8ZO-06 15 75094977 75094977 C T CSK 3'UTR 0.36 TCGA-WE-A8ZO-06 15 75981834 75981834 C T CSPG4 Silent p.V524V 0.28 TCGA-WE-A8ZO-06 15 79058883 79058883 C T ADAMTS7 Missense_Mutation p.V1124I 0.39 tolerated(0.41) benign(0.002) TCGA-WE-A8ZO-06 15 91026759 91026759 T A IQGAP1 Missense_Mutation p.F1241Y 0.42 deleterious(0) possibly_damaging(0.565) TCGA-WE-A8ZO-06 15 91354600 91354600 G A BLM Missense_Mutation p.R1347K 0.37 tolerated(0.44) benign(0.01) TCGA-WE-A8ZO-06 15 91354601 91354601 G A BLM Silent p.R1347R 0.37 TCGA-WE-A8ZO-06 16 11000685 11000685 G A CIITA Missense_Mutation p.D446N 0.36 deleterious(0) probably_damaging(0.989) TCGA-WE-A8ZO-06 16 15026598 15026598 G A NPIPA1 5'Flank 0.16 TCGA-WE-A8ZO-06 16 21136525 21136525 C T DNAH3 Missense_Mutation p.D459N 0.36 deleterious(0.04) benign(0.056) TCGA-WE-A8ZO-06 16 21156620 21156620 G A DNAH3 Silent p.I110I 0.39 TCGA-WE-A8ZO-06 16 23424810 23424810 G A COG7 Silent p.S456S 0.46 TCGA-WE-A8ZO-06 16 23497460 23497460 G A GGA2 Missense_Mutation p.S225L 0.30 tolerated(0.3) possibly_damaging(0.48) TCGA-WE-A8ZO-06 16 28117377 28117377 G A XPO6 Missense_Mutation p.P924L 0.28 deleterious(0) probably_damaging(0.964) TCGA-WE-A8ZO-06 16 28926004 28926004 G A RABEP2 Nonsense_Mutation p.Q178* 0.34 TCGA-WE-A8ZO-06 16 30723046 30723046 G A SRCAP Silent p.E491E 0.36 TCGA-WE-A8ZO-06 16 3282458 3282458 C T ZNF200 Silent p.K143K 0.36 TCGA-WE-A8ZO-06 16 347228 347228 T A AXIN1 Splice_Site p.X595_splice 0.41 TCGA-WE-A8ZO-06 16 46638026 46638026 T C SHCBP1 Missense_Mutation p.N318S 0.36 tolerated(0.56) benign(0.03) TCGA-WE-A8ZO-06 16 4732863 4732863 T G MGRN1 Missense_Mutation p.D466E 0.42 tolerated_low_confidence(0.24) benign(0.23) TCGA-WE-A8ZO-06 16 4847746 4847746 G A ROGDI Missense_Mutation p.S264F 0.41 deleterious(0) possibly_damaging(0.908) TCGA-WE-A8ZO-06 16 50327351 50327351 C T ADCY7 Silent p.D258D 0.34 TCGA-WE-A8ZO-06 16 58319957 58319957 C T PRSS54 Missense_Mutation p.D136N 0.33 deleterious(0.05) probably_damaging(0.971) TCGA-WE-A8ZO-06 16 65026886 65026886 C T CDH11 Missense_Mutation p.G192E 0.36 deleterious(0) possibly_damaging(0.843) TCGA-WE-A8ZO-06 16 66426101 66426101 C T CDH5 Silent p.I344I 0.38 TCGA-WE-A8ZO-06 16 68386159 68386159 C T PRMT7 Silent p.L474L 0.38 TCGA-WE-A8ZO-06 16 89347620 89347620 T A ANKRD11 Missense_Mutation p.Q1777L 0.45 possibly_damaging(0.864) TCGA-WE-A8ZO-06 16 9858266 9858266 G A GRIN2A Silent p.S1045S 0.37 TCGA-WE-A8ZO-06 17 10411809 10411809 C T MYH1 Missense_Mutation p.D590N 0.31 deleterious(0.03) benign(0.051) TCGA-WE-A8ZO-06 17 10429959 10429959 C T MYH2 Missense_Mutation p.E1382K 0.39 deleterious(0) benign(0.323) TCGA-WE-A8ZO-06 17 10451101 10451101 G A MYH2 Missense_Mutation p.S46F 0.34 deleterious(0.02) possibly_damaging(0.652) TCGA-WE-A8ZO-06 17 11515097 11515097 G A DNAH9 Missense_Mutation p.A302T 0.35 probably_damaging(0.982) TCGA-WE-A8ZO-06 17 16049784 16049784 G A NCOR1 Missense_Mutation p.R330W 0.15 probably_damaging(0.998) TCGA-WE-A8ZO-06 17 16691261 16691261 G A CCDC144A 3'UTR 0.32 TCGA-WE-A8ZO-06 17 16852159 16852159 T C TNFRSF13B Missense_Mutation p.N113S 0.40 tolerated(0.16) benign(0.178) TCGA-WE-A8ZO-06 17 19091487 19091487 G A SNORD3A RNA 0.12 TCGA-WE-A8ZO-06 17 21319612 21319612 G A KCNJ12 Missense_Mutation p.E320K 0.08 deleterious(0.02) possibly_damaging(0.769) TCGA-WE-A8ZO-06 17 26856236 26856236 C T FOXN1 Missense_Mutation p.S275F 0.45 deleterious(0) probably_damaging(0.948) TCGA-WE-A8ZO-06 17 28537628 28537628 C T SLC6A4 Missense_Mutation p.D452N 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 17 30687928 30687928 C T ZNF207 Missense_Mutation p.P165S 0.34 tolerated(0.06) benign(0.005) TCGA-WE-A8ZO-06 17 32483370 32483370 G A ASIC2 Missense_Mutation p.S61F 0.25 tolerated(0.05) possibly_damaging(0.579) TCGA-WE-A8ZO-06 17 37627788 37627788 C T CDK12 Missense_Mutation p.P568L 0.36 probably_damaging(0.927) TCGA-WE-A8ZO-06 17 39550166 39550166 C T KRT31 3'UTR 0.36 TCGA-WE-A8ZO-06 17 39672161 39672161 G A KRT15 Silent p.I334I 0.45 TCGA-WE-A8ZO-06 17 40766880 40766880 C T TUBG1 Missense_Mutation p.R393C 0.40 deleterious(0.04) possibly_damaging(0.815) TCGA-WE-A8ZO-06 17 44060871 44060871 C T MAPT Missense_Mutation p.P234L 0.49 deleterious(0) possibly_damaging(0.474) TCGA-WE-A8ZO-06 17 47122386 47122386 C T IGF2BP1 Missense_Mutation p.R452C 0.42 deleterious(0.03) probably_damaging(0.975) TCGA-WE-A8ZO-06 17 4719954 4719954 C A PLD2 Missense_Mutation p.L499I 0.34 tolerated(0.07) benign(0.047) TCGA-WE-A8ZO-06 17 5463079 5463079 C T NLRP1 Missense_Mutation p.E313K 0.36 deleterious(0.02) possibly_damaging(0.566) TCGA-WE-A8ZO-06 17 56232809 56232809 G A OR4D1 Missense_Mutation p.A99T 0.44 tolerated(0.8) benign(0.007) TCGA-WE-A8ZO-06 17 650222 650222 G A GEMIN4 Missense_Mutation p.S354F 0.40 deleterious(0.04) probably_damaging(0.938) TCGA-WE-A8ZO-06 17 66898929 66898929 G A ABCA8 Missense_Mutation p.P857S 0.38 tolerated(0.24) probably_damaging(0.968) TCGA-WE-A8ZO-06 17 67300946 67300946 G A ABCA5 Missense_Mutation p.S265F 0.28 deleterious(0) possibly_damaging(0.847) TCGA-WE-A8ZO-06 17 72522189 72522189 G A CD300LB Missense_Mutation p.S60F 0.35 tolerated(0.22) benign(0.029) TCGA-WE-A8ZO-06 17 80274783 80274783 C T CD7 Missense_Mutation p.G53S 0.30 tolerated(0.65) benign(0.013) TCGA-WE-A8ZO-06 17 8792525 8792525 C T PIK3R5 Missense_Mutation p.G276R 0.17 tolerated(0.2) benign(0.049) TCGA-WE-A8ZO-06 18 14478531 14478531 C T CXADRP3 RNA 0.29 TCGA-WE-A8ZO-06 18 28993398 28993398 G A DSG4 Missense_Mutation p.G1007E 0.38 tolerated(0.17) possibly_damaging(0.69) TCGA-WE-A8ZO-06 18 30260388 30260388 C T KLHL14 Silent p.G471G 0.40 TCGA-WE-A8ZO-06 18 40854078 40854078 G A SYT4 Missense_Mutation p.P106S 0.35 tolerated(0.18) benign(0.156) TCGA-WE-A8ZO-06 18 44549176 44549176 G A TCEB3CL Missense_Mutation p.P375S 0.06 deleterious(0) benign(0) TCGA-WE-A8ZO-06 18 48252444 48252444 C T MAPK4 Silent p.P322P 0.29 TCGA-WE-A8ZO-06 18 57020468 57020468 C G LMAN1 Missense_Mutation p.R202P 0.36 deleterious(0) probably_damaging(0.983) TCGA-WE-A8ZO-06 18 61306891 61306891 C T SERPINB4 Missense_Mutation p.E197K 0.40 tolerated(0.07) benign(0.172) TCGA-WE-A8ZO-06 18 7037672 7037672 C T LAMA1 Missense_Mutation p.G548R 0.37 tolerated(0.06) benign(0.066) TCGA-WE-A8ZO-06 18 77063637 77063637 G A ATP9B Missense_Mutation p.R482Q 0.40 deleterious(0) possibly_damaging(0.708) TCGA-WE-A8ZO-06 18 8825541 8825541 A T SOGA2 Nonsense_Mutation p.K1345* 0.48 TCGA-WE-A8ZO-06 19 11591481 11591481 C T ELAVL3 5'UTR 0.29 TCGA-WE-A8ZO-06 19 11591482 11591482 C T ELAVL3 5'UTR 0.29 TCGA-WE-A8ZO-06 19 11890982 11890982 C T ZNF441 Missense_Mutation p.R115C 0.40 deleterious(0.02) possibly_damaging(0.793) TCGA-WE-A8ZO-06 19 12758307 12758307 C T MAN2B1 Missense_Mutation p.G924R 0.43 tolerated(0.13) benign(0.078) TCGA-WE-A8ZO-06 19 12866440 12866440 C T BEST2 Silent p.I242I 0.35 TCGA-WE-A8ZO-06 19 14079484 14079484 G A RFX1 Missense_Mutation p.P542L 0.38 deleterious(0.01) benign(0.027) TCGA-WE-A8ZO-06 19 15124516 15124516 G A CCDC105 Nonsense_Mutation p.W201* 0.29 TCGA-WE-A8ZO-06 19 15918422 15918422 G A OR10H1 Silent p.A142A 0.46 TCGA-WE-A8ZO-06 19 1623989 1623989 G A TCF3 Silent p.P170P 0.59 TCGA-WE-A8ZO-06 19 16640678 16640678 G A CHERP Nonsense_Mutation p.Q304* 0.52 TCGA-WE-A8ZO-06 19 17533019 17533019 C T MVB12A Intron 0.40 TCGA-WE-A8ZO-06 19 20117476 20117476 G A ZNF682 Missense_Mutation p.H279Y 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-WE-A8ZO-06 19 20229635 20229635 C T ZNF90 Silent p.P424P 0.57 TCGA-WE-A8ZO-06 19 20728460 20728460 G A ZNF737 Silent p.N183N 0.34 TCGA-WE-A8ZO-06 19 2202719 2202719 T G DOT1L Missense_Mutation p.F243C 0.44 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZO-06 19 22156725 22156725 A T ZNF208 Missense_Mutation p.C371S 0.09 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 19 2769019 2769019 A C SGTA Missense_Mutation p.H16Q 0.40 tolerated(0.29) benign(0.051) TCGA-WE-A8ZO-06 19 35617891 35617891 G A LGI4 Missense_Mutation p.S220L 0.34 deleterious(0.04) benign(0.009) TCGA-WE-A8ZO-06 19 36236311 36236311 G A PSENEN 5'UTR 0.42 TCGA-WE-A8ZO-06 19 36351465 36351465 G A KIRREL2 Missense_Mutation p.R275K 0.34 tolerated(0.26) benign(0.016) TCGA-WE-A8ZO-06 19 37677857 37677857 G A ZNF585B Silent p.S194S 0.39 TCGA-WE-A8ZO-06 19 39421288 39421288 G A SARS2 Missense_Mutation p.P30L 0.44 deleterious_low_confidence(0.04) benign(0.004) TCGA-WE-A8ZO-06 19 4292751 4292751 G A TMIGD2 Missense_Mutation p.R232C 0.47 tolerated(0.11) benign(0) TCGA-WE-A8ZO-06 19 4292752 4292752 G A TMIGD2 Silent p.P231P 0.47 TCGA-WE-A8ZO-06 19 43358311 43358311 C T PSG10P RNA 0.37 TCGA-WE-A8ZO-06 19 46307789 46307789 G A RSPH6A Silent p.F458F 0.35 TCGA-WE-A8ZO-06 19 46444052 46444052 C T NOVA2 Missense_Mutation p.S183N 0.20 tolerated(0.18) unknown(0) TCGA-WE-A8ZO-06 19 46733596 46733596 G A IGFL1 Missense_Mutation p.D49N 0.35 tolerated(0.74) benign(0.037) TCGA-WE-A8ZO-06 19 50963437 50963437 G A MYBPC2 Splice_Site p.X977_splice 0.29 TCGA-WE-A8ZO-06 19 53057506 53057506 A G ZNF808 Missense_Mutation p.K446R 0.45 tolerated(0.57) benign(0.023) TCGA-WE-A8ZO-06 19 53454453 53454453 G A ZNF816 Missense_Mutation p.S192F 0.34 tolerated(0.72) benign(0.067) TCGA-WE-A8ZO-06 19 54261508 54261508 G A MIR1283-2 RNA 0.36 TCGA-WE-A8ZO-06 19 54301627 54301627 G A NLRP12 Missense_Mutation p.L933F 0.38 tolerated(0.06) probably_damaging(0.95) TCGA-WE-A8ZO-06 19 55086030 55086030 C T LILRA2 Silent p.P111P 0.42 TCGA-WE-A8ZO-06 19 55350982 55350982 G A KIR2DS4 Missense_Mutation p.G157E 0.39 deleterious_low_confidence(0) benign(0.042) TCGA-WE-A8ZO-06 19 55399382 55399382 G A FCAR Missense_Mutation p.G124S 0.38 tolerated(0.66) benign(0.01) TCGA-WE-A8ZO-06 19 56369624 56369624 G A NLRP4 Missense_Mutation p.D289N 0.38 tolerated(0.34) benign(0.036) TCGA-WE-A8ZO-06 19 56459497 56459497 G A NLRP8 Missense_Mutation p.E77K 0.30 tolerated(1) benign(0) TCGA-WE-A8ZO-06 19 56467434 56467434 G A NLRP8 Nonsense_Mutation p.W670* 0.37 TCGA-WE-A8ZO-06 19 57642078 57642078 G A USP29 Missense_Mutation p.E679K 0.35 tolerated(0.23) benign(0.198) TCGA-WE-A8ZO-06 19 58596576 58596576 C T ZSCAN18 Missense_Mutation p.D393N 0.38 tolerated(0.08) possibly_damaging(0.656) TCGA-WE-A8ZO-06 19 7914160 7914160 C T EVI5L Missense_Mutation p.R191W 0.48 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZO-06 19 8661876 8661876 G A ADAMTS10 Silent p.I345I 0.33 TCGA-WE-A8ZO-06 19 9002606 9002606 G A MUC16 Missense_Mutation p.P13404S 0.24 probably_damaging(0.991) TCGA-WE-A8ZO-06 19 9002607 9002607 G A MUC16 Silent p.S13403S 0.25 TCGA-WE-A8ZO-06 19 9054343 9054343 C T MUC16 Missense_Mutation p.D10427N 0.38 benign(0.043) TCGA-WE-A8ZO-06 19 9082672 9082672 G A MUC16 Missense_Mutation p.S3048F 0.49 unknown(0) TCGA-WE-A8ZO-06 19 9089468 9089468 C T MUC16 Missense_Mutation p.E783K 0.42 unknown(0) TCGA-WE-A8ZO-06 19 9089571 9089571 G A MUC16 Silent p.A748A 0.42 TCGA-WE-A8ZO-06 1 109538456 109538456 G A WDR47 Silent p.S487S 0.83 TCGA-WE-A8ZO-06 1 110280786 110280786 C T GSTM3 Missense_Mutation p.R100Q 0.81 deleterious(0.02) benign(0.05) TCGA-WE-A8ZO-06 1 114362179 114362179 C T PTPN22 Intron 0.87 TCGA-WE-A8ZO-06 1 115153695 115153695 C G DENND2C Missense_Mutation p.K456N 0.39 deleterious(0.01) benign(0.382) TCGA-WE-A8ZO-06 1 115166230 115166230 G A DENND2C Nonsense_Mutation p.R281* 0.84 TCGA-WE-A8ZO-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.81 tolerated(0.06) benign(0.006) TCGA-WE-A8ZO-06 1 12884979 12884979 C T PRAMEF11 Missense_Mutation p.E378K 0.70 deleterious(0) possibly_damaging(0.731) TCGA-WE-A8ZO-06 1 13669331 13669331 G A PRAMEF14 Silent p.F333F 0.94 TCGA-WE-A8ZO-06 1 145273222 145273222 C T NOTCH2NL Nonsense_Mutation p.R26* 0.19 TCGA-WE-A8ZO-06 1 152059100 152059100 G A TCHHL1 Missense_Mutation p.P353L 0.25 tolerated(0.13) benign(0.018) TCGA-WE-A8ZO-06 1 152277774 152277774 C T FLG Silent p.Q3196Q 0.36 TCGA-WE-A8ZO-06 1 152278746 152278746 C T FLG Silent p.Q2872Q 0.14 TCGA-WE-A8ZO-06 1 153066138 153066138 C T SPRR2E Silent p.P30P 0.74 TCGA-WE-A8ZO-06 1 156039500 156039500 G A RAB25 Missense_Mutation p.D158N 0.28 tolerated_low_confidence(0.06) benign(0.18) TCGA-WE-A8ZO-06 1 158636216 158636216 C T SPTA1 Missense_Mutation p.E704K 0.86 tolerated(0.76) benign(0.152) TCGA-WE-A8ZO-06 1 158687311 158687311 C T OR6K3 Missense_Mutation p.D199N 0.88 tolerated(0.33) probably_damaging(0.996) TCGA-WE-A8ZO-06 1 158747161 158747161 T C OR6N2 Missense_Mutation p.K89E 0.23 tolerated(0.26) benign(0.009) TCGA-WE-A8ZO-06 1 160393965 160393965 C T VANGL2 Silent p.A399A 0.27 TCGA-WE-A8ZO-06 1 162731108 162731108 C T DDR2 Silent p.P321P 0.51 TCGA-WE-A8ZO-06 1 172571850 172571850 A C SUCO Missense_Mutation p.Y1063S 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-WE-A8ZO-06 1 177245398 177245398 C T BRINP2 Silent p.I280I 0.30 TCGA-WE-A8ZO-06 1 196711046 196711046 C T CFH Missense_Mutation p.P1000S 0.27 tolerated(0.31) benign(0.165) TCGA-WE-A8ZO-06 1 196799656 196799656 C T CFHR1 Missense_Mutation p.P212S 0.20 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 1 196881915 196881915 C T CFHR4 Missense_Mutation p.S347F 0.18 deleterious(0.01) possibly_damaging(0.485) TCGA-WE-A8ZO-06 1 212538668 212538668 G A TMEM206 Silent p.F375F 0.29 TCGA-WE-A8ZO-06 1 21890646 21890646 G A ALPL Silent p.E195E 0.77 TCGA-WE-A8ZO-06 1 21902284 21902284 G A ALPL Silent p.A352A 0.75 TCGA-WE-A8ZO-06 1 223286264 223286264 T C TLR5 Missense_Mutation p.N37S 0.35 tolerated(0.12) benign(0.092) TCGA-WE-A8ZO-06 1 223396696 223396696 G A SUSD4 Missense_Mutation p.P447S 0.85 tolerated(1) benign(0.026) TCGA-WE-A8ZO-06 1 228482034 228482034 C T OBSCN Silent p.I4200I 0.25 TCGA-WE-A8ZO-06 1 230390974 230390974 C T GALNT2 Silent p.F340F 0.51 TCGA-WE-A8ZO-06 1 240371033 240371033 G A FMN2 Missense_Mutation p.G974E 0.29 unknown(0) TCGA-WE-A8ZO-06 1 29435854 29435854 G A EPB41 Missense_Mutation p.D774N 0.89 deleterious(0.03) benign(0.15) TCGA-WE-A8ZO-06 1 33354872 33354872 G A HPCA Missense_Mutation p.V125M 0.70 deleterious(0) probably_damaging(0.986) TCGA-WE-A8ZO-06 1 57170022 57170022 G A PRKAA2 Silent p.T389T 0.30 TCGA-WE-A8ZO-06 1 57285060 57285060 G A C1orf168 5'Flank 0.82 TCGA-WE-A8ZO-06 1 57499222 57499222 C A DAB1 Intron 0.82 TCGA-WE-A8ZO-06 1 6046304 6046304 G T NPHP4 Missense_Mutation p.P16T 0.65 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 1 60499176 60499176 G A C1orf87 Missense_Mutation p.S334L 0.80 deleterious(0.01) possibly_damaging(0.752) TCGA-WE-A8ZO-06 1 62739714 62739714 T A KANK4 Silent p.G354G 0.88 TCGA-WE-A8ZO-06 1 62739716 62739716 C T KANK4 Missense_Mutation p.G354R 0.88 tolerated(0.4) benign(0.017) TCGA-WE-A8ZO-06 1 75139231 75139231 G A C1orf173 5'UTR 0.79 TCGA-WE-A8ZO-06 1 85548082 85548082 T A WDR63 Missense_Mutation p.L129I 0.86 deleterious(0.03) probably_damaging(0.926) TCGA-WE-A8ZO-06 20 13145506 13145506 G A SPTLC3 Missense_Mutation p.E551K 0.31 tolerated(0.07) benign(0.154) TCGA-WE-A8ZO-06 20 1592064 1592064 C T SIRPB1 Intron 0.33 TCGA-WE-A8ZO-06 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.40 deleterious(0) probably_damaging(0.991) TCGA-WE-A8ZO-06 20 30433190 30433190 G A FOXS1 Silent p.F52F 0.44 TCGA-WE-A8ZO-06 20 33703644 33703644 T A EDEM2 Silent p.P443P 0.39 TCGA-WE-A8ZO-06 20 3679901 3679901 C T SIGLEC1 Silent p.R578R 0.26 TCGA-WE-A8ZO-06 20 3739227 3739227 C T C20orf27 Missense_Mutation p.V65M 0.47 deleterious(0.04) possibly_damaging(0.878) TCGA-WE-A8ZO-06 20 40743889 40743889 C T PTPRT Missense_Mutation p.E1017K 0.44 tolerated(0.53) probably_damaging(0.98) TCGA-WE-A8ZO-06 20 43926839 43926839 G A MATN4 Missense_Mutation p.S466L 0.35 possibly_damaging(0.491) TCGA-WE-A8ZO-06 20 5282949 5282949 G A PROKR2 Missense_Mutation p.R298C 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 20 55012428 55012428 C T CASS4 Missense_Mutation p.P82L 0.40 tolerated(0.12) benign(0.019) TCGA-WE-A8ZO-06 20 5545700 5545700 G A GPCPD1 Missense_Mutation p.S431F 0.35 tolerated(0.77) benign(0.004) TCGA-WE-A8ZO-06 20 55982788 55982788 C T RBM38 Silent p.F202F 0.29 TCGA-WE-A8ZO-06 20 9391729 9391729 C T PLCB4 Missense_Mutation p.S670L 0.39 tolerated(0.16) benign(0.422) TCGA-WE-A8ZO-06 20 9453961 9453961 G A PLCB4 Silent p.L1136L 0.34 TCGA-WE-A8ZO-06 21 37618040 37618040 C T DOPEY2 Silent p.N1254N 0.18 TCGA-WE-A8ZO-06 21 42080422 42080422 G A DSCAM Missense_Mutation p.P107S 0.38 tolerated(1) benign(0.041) TCGA-WE-A8ZO-06 21 42694779 42694779 G A FAM3B Intron 0.55 TCGA-WE-A8ZO-06 21 44189241 44189241 C T PDE9A Silent p.I522I 0.33 TCGA-WE-A8ZO-06 21 46057331 46057331 C T KRTAP10-10 5'UTR 0.33 TCGA-WE-A8ZO-06 21 46645479 46645479 C G ADARB1 3'UTR 0.43 TCGA-WE-A8ZO-06 21 46888219 46888219 C T COL18A1 Missense_Mutation p.T237I 0.33 unknown(0) TCGA-WE-A8ZO-06 22 19050786 19050786 C T DGCR2 Nonsense_Mutation p.W185* 0.22 TCGA-WE-A8ZO-06 22 19168317 19168317 C T CLTCL1 Silent p.V1610V 0.42 TCGA-WE-A8ZO-06 22 20129011 20129011 C T ZDHHC8 Silent p.F361F 0.46 TCGA-WE-A8ZO-06 22 24087315 24087315 G A ZNF70 Missense_Mutation p.P5S 0.37 tolerated(0.41) benign(0.004) TCGA-WE-A8ZO-06 22 26688532 26688532 G A SEZ6L Silent p.L85L 0.33 TCGA-WE-A8ZO-06 22 38822815 38822815 C T KCNJ4 Silent p.R441R 0.43 TCGA-WE-A8ZO-06 22 39357649 39357649 G A APOBEC3A Silent p.R144R 0.38 TCGA-WE-A8ZO-06 22 40415281 40415281 G A FAM83F Missense_Mutation p.G200E 0.34 deleterious(0) probably_damaging(0.931) TCGA-WE-A8ZO-06 22 40661901 40661901 C T TNRC6B Missense_Mutation p.P556L 0.43 deleterious(0.02) possibly_damaging(0.703) TCGA-WE-A8ZO-06 22 45683277 45683277 G A UPK3A Missense_Mutation p.D145N 0.25 tolerated(0.18) possibly_damaging(0.48) TCGA-WE-A8ZO-06 22 45813595 45813595 C T RIBC2 Missense_Mutation p.P104S 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-WE-A8ZO-06 22 45826851 45826851 C T RIBC2 Silent p.T320T 0.31 TCGA-WE-A8ZO-06 22 50217403 50217403 A T BRD1 Missense_Mutation p.F188Y 0.30 tolerated(0.36) probably_damaging(0.999) TCGA-WE-A8ZO-06 22 50217404 50217404 A C BRD1 Missense_Mutation p.F188V 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-WE-A8ZO-06 2 119914305 119914305 C T C1QL2 3'UTR 0.82 TCGA-WE-A8ZO-06 2 128471203 128471203 G A WDR33 Missense_Mutation p.P1088S 0.72 tolerated_low_confidence(0.38) benign(0.004) TCGA-WE-A8ZO-06 2 152484345 152484345 T C NEB Missense_Mutation p.K3279E 0.81 probably_damaging(0.967) TCGA-WE-A8ZO-06 2 155098625 155098625 C T GALNT13 Missense_Mutation p.L132F 0.77 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZO-06 2 158114904 158114904 G A GALNT5 Missense_Mutation p.D104N 0.78 tolerated(0.49) benign(0.004) TCGA-WE-A8ZO-06 2 158272187 158272187 C G CYTIP 3'UTR 0.79 TCGA-WE-A8ZO-06 2 160176749 160176749 G A BAZ2B 3'UTR 0.50 TCGA-WE-A8ZO-06 2 175622337 175622337 G A CHRNA1 Missense_Mutation p.P126S 0.40 deleterious(0.02) benign(0.044) TCGA-WE-A8ZO-06 2 216946457 216946457 G A PECR Missense_Mutation p.S3F 0.60 tolerated_low_confidence(0.39) benign(0.006) TCGA-WE-A8ZO-06 2 220349029 220349029 G A SPEG Missense_Mutation p.V2282M 0.86 benign(0.429) TCGA-WE-A8ZO-06 2 242815163 242815163 G A CXXC11 Missense_Mutation p.G486S 0.81 tolerated(0.28) benign(0.017) TCGA-WE-A8ZO-06 2 26676394 26676394 C T DRC1 Silent p.F632F 0.81 TCGA-WE-A8ZO-06 2 27448609 27448609 C T CAD Silent p.L553L 0.83 TCGA-WE-A8ZO-06 2 48936151 48936151 C T LHCGR Missense_Mutation p.E206K 0.76 tolerated(0.47) benign(0.044) TCGA-WE-A8ZO-06 2 48950671 48950671 C T LHCGR Missense_Mutation p.E154K 0.82 deleterious(0) probably_damaging(0.983) TCGA-WE-A8ZO-06 2 70188160 70188160 G A ASPRV1 Missense_Mutation p.H221Y 0.80 deleterious(0.01) probably_damaging(0.989) TCGA-WE-A8ZO-06 2 87141008 87141008 C T RGPD1 5'Flank 0.67 TCGA-WE-A8ZO-06 2 96789960 96789960 G A ASTL Silent p.L309L 0.76 TCGA-WE-A8ZO-06 3 102181156 102181156 C T ZPLD1 Missense_Mutation p.P221L 0.36 deleterious(0) probably_damaging(0.947) TCGA-WE-A8ZO-06 3 108363139 108363139 G A DZIP3 Missense_Mutation p.E424K 0.40 tolerated_low_confidence(0.07) benign(0.04) TCGA-WE-A8ZO-06 3 108705748 108705748 C T MORC1 Missense_Mutation p.E746K 0.31 deleterious(0.05) benign(0.068) TCGA-WE-A8ZO-06 3 111603047 111603047 G A PHLDB2 Silent p.K41K 0.39 TCGA-WE-A8ZO-06 3 111780645 111780645 C T TMPRSS7 Missense_Mutation p.S315F 0.36 tolerated(0.57) benign(0.004) TCGA-WE-A8ZO-06 3 121305337 121305337 C T ARGFX Missense_Mutation p.P280S 0.35 tolerated(0.05) probably_damaging(0.967) TCGA-WE-A8ZO-06 3 122247244 122247244 C T PARP9 Nonsense_Mutation p.W844* 0.33 TCGA-WE-A8ZO-06 3 122247245 122247245 C T PARP9 Nonsense_Mutation p.W844* 0.33 TCGA-WE-A8ZO-06 3 122437451 122437451 A T PARP14 Missense_Mutation p.N1485Y 0.34 deleterious(0) benign(0.071) TCGA-WE-A8ZO-06 3 12434245 12434245 C T PPARG Missense_Mutation p.H205Y 0.40 deleterious(0.02) probably_damaging(0.936) TCGA-WE-A8ZO-06 3 138178864 138178864 C T ESYT3 Silent p.F242F 0.44 TCGA-WE-A8ZO-06 3 138739123 138739123 G A PRR23B Silent p.F127F 0.39 TCGA-WE-A8ZO-06 3 140692761 140692761 C T SLC25A36 Missense_Mutation p.S219F 0.41 tolerated(0.13) benign(0.027) TCGA-WE-A8ZO-06 3 142172066 142172066 C T ATR Silent p.K2555K 0.38 TCGA-WE-A8ZO-06 3 142403006 142403006 G A PLS1 Silent p.R246R 0.40 TCGA-WE-A8ZO-06 3 148558487 148558487 A G CPB1 Missense_Mutation p.N96S 0.39 deleterious(0.02) possibly_damaging(0.455) TCGA-WE-A8ZO-06 3 148601488 148601488 C T CPA3 Silent p.F289F 0.46 TCGA-WE-A8ZO-06 3 154055907 154055907 G A GPR149 Nonsense_Mutation p.R593* 0.39 TCGA-WE-A8ZO-06 3 167033599 167033599 C T ZBBX Missense_Mutation p.E405K 0.34 tolerated(0.11) benign(0.081) TCGA-WE-A8ZO-06 3 17051295 17051295 C T PLCL2 Missense_Mutation p.R27C 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 3 186006599 186006599 G A DGKG Silent p.V148V 0.23 TCGA-WE-A8ZO-06 3 193185135 193185135 C T ATP13A4 Missense_Mutation p.G362R 0.26 tolerated(0.07) benign(0.077) TCGA-WE-A8ZO-06 3 40558257 40558257 C T ZNF620 Missense_Mutation p.P391L 0.34 tolerated(1) possibly_damaging(0.778) TCGA-WE-A8ZO-06 3 48691118 48691118 C T CELSR3 Silent p.R1794R 0.37 TCGA-WE-A8ZO-06 3 48696459 48696459 G A CELSR3 Silent p.S1203S 0.39 TCGA-WE-A8ZO-06 3 49044867 49044867 G A WDR6 Missense_Mutation p.M31I 0.50 tolerated_low_confidence(0.09) benign(0.052) TCGA-WE-A8ZO-06 3 49314204 49314204 T A C3orf62 Silent p.G34G 0.36 TCGA-WE-A8ZO-06 3 49337953 49337953 G A USP4 Nonsense_Mutation p.R487* 0.27 TCGA-WE-A8ZO-06 3 52540793 52540793 G A STAB1 Missense_Mutation p.G639D 0.41 deleterious(0.02) possibly_damaging(0.818) TCGA-WE-A8ZO-06 3 52977515 52977515 A G SFMBT1 Missense_Mutation p.I73T 0.42 tolerated(0.06) probably_damaging(0.991) TCGA-WE-A8ZO-06 3 55504357 55504357 G A WNT5A Silent p.I302I 0.36 TCGA-WE-A8ZO-06 3 58156445 58156445 G T FLNB Nonsense_Mutation p.E2620* 0.29 TCGA-WE-A8ZO-06 3 62189089 62189089 G A PTPRG Silent p.T540T 0.33 TCGA-WE-A8ZO-06 3 81627124 81627124 G A GBE1 Nonsense_Mutation p.R524* 0.36 TCGA-WE-A8ZO-06 3 93755568 93755568 C T ARL13B Missense_Mutation p.A220V 0.50 deleterious(0.02) possibly_damaging(0.49) TCGA-WE-A8ZO-06 3 99513569 99513569 G A COL8A1 Missense_Mutation p.G275E 0.28 deleterious(0) unknown(0) TCGA-WE-A8ZO-06 4 100266092 100266092 G A ADH1C Missense_Mutation p.S165L 0.45 possibly_damaging(0.652) TCGA-WE-A8ZO-06 4 104029974 104029974 A G CENPE Missense_Mutation p.L2666S 0.51 probably_damaging(0.999) TCGA-WE-A8ZO-06 4 119035972 119035972 G A NDST3 Missense_Mutation p.E361K 0.35 deleterious(0) possibly_damaging(0.735) TCGA-WE-A8ZO-06 4 125590721 125590721 G A ANKRD50 Silent p.S1237S 0.40 TCGA-WE-A8ZO-06 4 126367493 126367493 G A FAT4 Silent p.S2413S 0.42 TCGA-WE-A8ZO-06 4 154709937 154709937 G T SFRP2 Nonsense_Mutation p.C17* 0.47 TCGA-WE-A8ZO-06 4 155242028 155242028 G A DCHS2 Missense_Mutation p.P1053L 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 4 159559184 159559184 G A RXFP1 Silent p.Q332Q 0.26 TCGA-WE-A8ZO-06 4 164394179 164394179 C T TKTL2 Silent p.K236K 0.45 TCGA-WE-A8ZO-06 4 171010962 171010962 C T AADAT 5'UTR 0.39 TCGA-WE-A8ZO-06 4 178283577 178283577 C T NEIL3 Silent p.F590F 0.34 TCGA-WE-A8ZO-06 4 1824811 1824811 C T LETM1 Silent p.V460V 0.43 TCGA-WE-A8ZO-06 4 185552963 185552963 G A CASP3 Missense_Mutation p.R147C 0.42 tolerated(0.24) benign(0.002) TCGA-WE-A8ZO-06 4 187541233 187541233 G A FAT1 Silent p.I2169I 0.37 TCGA-WE-A8ZO-06 4 40829167 40829167 G A APBB2 Missense_Mutation p.L572F 0.35 tolerated(0.12) probably_damaging(0.993) TCGA-WE-A8ZO-06 4 54364864 54364864 G A LNX1 Missense_Mutation p.R308C 0.36 deleterious(0) probably_damaging(0.946) TCGA-WE-A8ZO-06 4 62936000 62936000 G A LPHN3 Missense_Mutation p.E1262K 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 4 71467301 71467301 C T AMBN Missense_Mutation p.P154L 0.42 deleterious(0.01) benign(0.089) TCGA-WE-A8ZO-06 4 72204922 72204922 C T SLC4A4 Intron 0.45 TCGA-WE-A8ZO-06 4 74357737 74357737 G A AFM Missense_Mutation p.G331E 0.44 tolerated(1) benign(0.003) TCGA-WE-A8ZO-06 4 80327872 80327872 C T GK2 Missense_Mutation p.E495K 0.34 tolerated(0.09) possibly_damaging(0.57) TCGA-WE-A8ZO-06 4 96762391 96762391 C T PDHA2 Missense_Mutation p.H364Y 0.36 tolerated(0.28) benign(0.001) TCGA-WE-A8ZO-06 5 100147570 100147570 C T ST8SIA4 Missense_Mutation p.G354E 0.34 benign(0.008) TCGA-WE-A8ZO-06 5 101748779 101748779 G A SLCO6A1 Missense_Mutation p.S514F 0.31 tolerated(0.24) possibly_damaging(0.449) TCGA-WE-A8ZO-06 5 114462286 114462286 G A TRIM36 Missense_Mutation p.P701S 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 5 13719171 13719171 C T DNAH5 Missense_Mutation p.D4107N 0.36 possibly_damaging(0.822) TCGA-WE-A8ZO-06 5 13721222 13721222 T A DNAH5 Missense_Mutation p.T4056S 0.35 possibly_damaging(0.621) TCGA-WE-A8ZO-06 5 137488287 137488287 C T BRD8 Missense_Mutation p.E914K 0.43 deleterious_low_confidence(0.01) benign(0.066) TCGA-WE-A8ZO-06 5 13841219 13841219 C T DNAH5 Silent p.Q1835Q 0.42 TCGA-WE-A8ZO-06 5 13885275 13885275 G A DNAH5 Silent p.L936L 0.45 TCGA-WE-A8ZO-06 5 140236503 140236503 G A PCDHA10 Silent p.R290R 0.40 TCGA-WE-A8ZO-06 5 140501661 140501661 C T PCDHB4 Silent p.L27L 0.31 TCGA-WE-A8ZO-06 5 140515300 140515300 T C PCDHB5 Missense_Mutation p.M95T 0.39 deleterious_low_confidence(0) benign(0.014) TCGA-WE-A8ZO-06 5 140731519 140731519 G A PCDHGB1 Silent p.G564G 0.40 TCGA-WE-A8ZO-06 5 141325324 141325324 C T PCDH12 Silent p.A1059A 0.40 TCGA-WE-A8ZO-06 5 143586415 143586415 C T KCTD16 Silent p.I46I 0.44 TCGA-WE-A8ZO-06 5 145252411 145252411 C T GRXCR2 Missense_Mutation p.E41K 0.35 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 5 156515974 156515974 T C HAVCR2 Missense_Mutation p.K231E 0.49 deleterious(0) probably_damaging(0.917) TCGA-WE-A8ZO-06 5 172518045 172518045 C T CREBRF Missense_Mutation p.P288L 0.41 deleterious_low_confidence(0.03) benign(0.306) TCGA-WE-A8ZO-06 5 37020575 37020575 C T NIPBL Silent p.F1675F 0.38 TCGA-WE-A8ZO-06 5 41015569 41015569 C T MROH2B Missense_Mutation p.E966K 0.19 deleterious(0.03) benign(0.005) TCGA-WE-A8ZO-06 5 42718737 42718737 C T GHR Silent p.N376N 0.44 TCGA-WE-A8ZO-06 5 49699234 49699234 C T EMB Missense_Mutation p.E219K 0.30 tolerated(0.14) possibly_damaging(0.69) TCGA-WE-A8ZO-06 5 61762991 61762991 C T IPO11 Silent p.L224L 0.33 TCGA-WE-A8ZO-06 5 65458097 65458097 C T SREK1 Missense_Mutation p.S191F 0.43 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 5 74981195 74981195 G A POC5 Missense_Mutation p.P415L 0.38 tolerated(0.32) probably_damaging(0.991) TCGA-WE-A8ZO-06 5 78944484 78944484 G C PAPD4 Missense_Mutation p.R289T 0.35 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 5 79059020 79059020 G A CMYA5 Missense_Mutation p.G3848E 0.19 probably_damaging(0.937) TCGA-WE-A8ZO-06 5 82837346 82837346 G A VCAN Missense_Mutation p.E2842K 0.43 tolerated(0.1) benign(0.117) TCGA-WE-A8ZO-06 6 107011662 107011662 G A AIM1 Silent p.T1646T 0.32 TCGA-WE-A8ZO-06 6 129959586 129959586 G A ARHGAP18 Missense_Mutation p.P169S 0.29 tolerated(0.16) possibly_damaging(0.786) TCGA-WE-A8ZO-06 6 134350559 134350559 A C SLC2A12 Missense_Mutation p.V135G 0.39 deleterious(0.04) benign(0.003) TCGA-WE-A8ZO-06 6 138483253 138483253 G A KIAA1244 Silent p.K10K 0.39 TCGA-WE-A8ZO-06 6 143091888 143091888 G A HIVEP2 Missense_Mutation p.P1330S 0.28 tolerated(0.07) probably_damaging(0.998) TCGA-WE-A8ZO-06 6 152640078 152640078 A G SYNE1 Silent p.L5437L 0.34 TCGA-WE-A8ZO-06 6 158923645 158923645 C T TULP4 Missense_Mutation p.H984Y 0.31 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-WE-A8ZO-06 6 167728943 167728943 G A UNC93A 3'UTR 0.32 TCGA-WE-A8ZO-06 6 26428868 26428868 C T BTN2A3P Intron 0.65 TCGA-WE-A8ZO-06 6 27424646 27424646 G A ZNF184 Missense_Mutation p.P86L 0.20 deleterious(0.02) possibly_damaging(0.617) TCGA-WE-A8ZO-06 6 30632960 30632960 G A DHX16 Missense_Mutation p.S338F 0.73 deleterious(0.04) unknown(0) TCGA-WE-A8ZO-06 6 30671464 30671464 G A MDC1 Silent p.V1832V 0.14 TCGA-WE-A8ZO-06 6 30679493 30679493 A T MDC1 Missense_Mutation p.D693E 0.05 deleterious(0.01) probably_damaging(0.952) TCGA-WE-A8ZO-06 6 31600176 31600176 G C PRRC2A Missense_Mutation p.R1242S 0.63 unknown(0) TCGA-WE-A8ZO-06 6 31611678 31611678 G A BAG6 Missense_Mutation p.P552L 0.67 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8ZO-06 6 32190347 32190347 C A NOTCH4 Missense_Mutation p.G131V 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 6 33146486 33146486 G A COL11A2 Silent p.L477L 0.67 TCGA-WE-A8ZO-06 6 36285039 36285039 G A C6orf222 3'UTR 0.71 TCGA-WE-A8ZO-06 6 37438842 37438842 T A CMTR1 Missense_Mutation p.F517L 0.22 deleterious(0) possibly_damaging(0.556) TCGA-WE-A8ZO-06 6 49700977 49700977 C T CRISP3 Missense_Mutation p.G174E 0.63 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 6 55922520 55922520 C T COL21A1 Missense_Mutation p.D937N 0.18 deleterious(0.03) unknown(0) TCGA-WE-A8ZO-06 6 55925730 55925730 C T COL21A1 Missense_Mutation p.D771N 0.19 tolerated(0.4) benign(0.288) TCGA-WE-A8ZO-06 6 66205050 66205050 C T EYS Missense_Mutation p.G85E 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 6 75836068 75836068 C T COL12A1 Silent p.V2153V 0.35 TCGA-WE-A8ZO-06 6 76024521 76024521 C G FILIP1 Missense_Mutation p.E343Q 0.47 deleterious(0.05) benign(0.374) TCGA-WE-A8ZO-06 6 76712713 76712713 C T IMPG1 Missense_Mutation p.D405N 0.33 deleterious(0.03) possibly_damaging(0.717) TCGA-WE-A8ZO-06 6 82904293 82904293 C T IBTK Missense_Mutation p.E1081K 0.36 tolerated(0.21) benign(0.005) TCGA-WE-A8ZO-06 6 84108201 84108201 C T ME1 Missense_Mutation p.E83K 0.44 deleterious(0.02) probably_damaging(1) TCGA-WE-A8ZO-06 6 84567050 84567050 C T RIPPLY2 Missense_Mutation p.S110L 0.39 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 6 84862797 84862797 A C KIAA1009 Missense_Mutation p.D1032E 0.37 tolerated(1) benign(0.004) TCGA-WE-A8ZO-06 7 100187555 100187555 G A FBXO24 Intron 0.47 TCGA-WE-A8ZO-06 7 100187686 100187686 C T FBXO24 Silent p.F80F 0.41 TCGA-WE-A8ZO-06 7 100282406 100282406 G A GIGYF1 Missense_Mutation p.P468S 0.38 deleterious(0.01) unknown(0) TCGA-WE-A8ZO-06 7 112112905 112112905 C T IFRD1 Missense_Mutation p.R419C 0.35 deleterious(0) probably_damaging(0.959) TCGA-WE-A8ZO-06 7 121682764 121682764 C T PTPRZ1 Silent p.I1968I 0.37 TCGA-WE-A8ZO-06 7 128585919 128585919 G A IRF5 Silent p.G72G 0.33 TCGA-WE-A8ZO-06 7 138732241 138732241 A T ZC3HAV1 3'UTR 0.22 TCGA-WE-A8ZO-06 7 139657541 139657541 G A TBXAS1 Missense_Mutation p.R313Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZO-06 7 141796130 141796130 G A MGAM Splice_Site p.X1640_splice 0.38 TCGA-WE-A8ZO-06 7 142378870 142378870 G A MTRNR2L6 3'Flank 0.39 TCGA-WE-A8ZO-06 7 142428739 142428739 G A TRBV28 Silent p.R33R 0.27 TCGA-WE-A8ZO-06 7 146536832 146536832 G A CNTNAP2 Missense_Mutation p.D80N 0.48 tolerated(1) benign(0.147) TCGA-WE-A8ZO-06 7 149558220 149558220 C T ZNF862 Silent p.I657I 0.45 TCGA-WE-A8ZO-06 7 150439341 150439341 C T GIMAP5 Silent p.C38C 0.46 TCGA-WE-A8ZO-06 7 157929367 157929367 C T PTPRN2 Missense_Mutation p.D385N 0.35 tolerated(0.17) benign(0.026) TCGA-WE-A8ZO-06 7 18875143 18875143 C T HDAC9 Silent p.I840I 0.39 TCGA-WE-A8ZO-06 7 28758485 28758485 G A CREB5 Missense_Mutation p.V194I 0.33 tolerated(0.39) probably_damaging(0.99) TCGA-WE-A8ZO-06 7 34697997 34697997 G A NPSR1 5'UTR 0.30 TCGA-WE-A8ZO-06 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.41 TCGA-WE-A8ZO-06 7 4002412 4002412 C G SDK1 Missense_Mutation p.S453C 0.35 deleterious(0) possibly_damaging(0.897) TCGA-WE-A8ZO-06 7 42012092 42012092 C T GLI3 Silent p.R649R 0.40 TCGA-WE-A8ZO-06 7 47343039 47343039 G A TNS3 Missense_Mutation p.P989L 0.30 deleterious(0.03) benign(0.009) TCGA-WE-A8ZO-06 7 47970715 47970715 G A PKD1L1 Silent p.P241P 0.29 TCGA-WE-A8ZO-06 7 47971615 47971615 C T PKD1L1 Nonsense_Mutation p.W146* 0.44 TCGA-WE-A8ZO-06 7 76825816 76825816 G A FGL2 Missense_Mutation p.P367L 0.43 deleterious(0.01) possibly_damaging(0.582) TCGA-WE-A8ZO-06 7 77973109 77973109 C T MAGI2 Missense_Mutation p.G465E 0.50 deleterious(0) probably_damaging(0.969) TCGA-WE-A8ZO-06 7 82785667 82785667 C T PCLO Missense_Mutation p.G97E 0.27 unknown(0) TCGA-WE-A8ZO-06 7 92020649 92020649 C T ANKIB1 Missense_Mutation p.P741L 0.43 tolerated(0.11) benign(0.016) TCGA-WE-A8ZO-06 7 94037540 94037540 G A COL1A2 Missense_Mutation p.G229S 0.38 unknown(0) TCGA-WE-A8ZO-06 7 94913349 94913349 G A PPP1R9A Missense_Mutation p.E1106K 0.35 tolerated(0.17) benign(0.287) TCGA-WE-A8ZO-06 7 98547424 98547424 G A TRRAP Missense_Mutation p.E1692K 0.30 possibly_damaging(0.893) TCGA-WE-A8ZO-06 7 98556990 98556990 G A TRRAP Silent p.A2115A 0.31 TCGA-WE-A8ZO-06 7 99655459 99655459 A T ZSCAN21 Missense_Mutation p.I180F 0.31 tolerated(1) possibly_damaging(0.711) TCGA-WE-A8ZO-06 8 114031325 114031325 C T CSMD3 Missense_Mutation p.R334Q 0.60 deleterious(0.04) possibly_damaging(0.906) TCGA-WE-A8ZO-06 8 120801091 120801091 C T TAF2 Missense_Mutation p.R541Q 0.34 deleterious(0) benign(0.28) TCGA-WE-A8ZO-06 8 133150167 133150167 G A KCNQ3 Silent p.L555L 0.25 TCGA-WE-A8ZO-06 8 139163985 139163985 C T FAM135B Silent p.L911L 0.42 TCGA-WE-A8ZO-06 8 139774686 139774686 G A COL22A1 Silent p.F609F 0.22 TCGA-WE-A8ZO-06 8 141542552 141542552 G A AGO2 Missense_Mutation p.R812W 0.67 deleterious(0) probably_damaging(1) TCGA-WE-A8ZO-06 8 3474245 3474245 C T CSMD1 Missense_Mutation p.G362S 0.19 benign(0.031) TCGA-WE-A8ZO-06 8 35647892 35647892 C T UNC5D Silent p.F891F 0.35 TCGA-WE-A8ZO-06 8 39775448 39775448 G A IDO1 Missense_Mutation p.D48N 0.31 tolerated(0.15) benign(0.135) TCGA-WE-A8ZO-06 8 41522394 41522394 C T ANK1 Intron 0.29 TCGA-WE-A8ZO-06 8 53071533 53071533 G A ST18 Silent p.A577A 0.07 TCGA-WE-A8ZO-06 8 55541857 55541857 C T RP1 Silent p.L1805L 0.42 TCGA-WE-A8ZO-06 8 55542905 55542905 G A RP1 Missense_Mutation p.D2155N 0.35 tolerated(0.09) possibly_damaging(0.732) TCGA-WE-A8ZO-06 8 56436772 56436772 G A XKR4 Missense_Mutation p.E647K 0.39 deleterious(0) probably_damaging(0.981) TCGA-WE-A8ZO-06 8 65291742 65291742 G A MIR124-2 RNA 0.32 TCGA-WE-A8ZO-06 8 6783551 6783551 T A DEFA6 Missense_Mutation p.T3S 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-WE-A8ZO-06 8 72965995 72965995 T A TRPA1 Missense_Mutation p.E546V 0.15 deleterious(0) benign(0.282) TCGA-WE-A8ZO-06 9 105767454 105767454 G A CYLC2 Missense_Mutation p.E181K 0.73 deleterious(0.01) unknown(0) TCGA-WE-A8ZO-06 9 105767538 105767538 G A CYLC2 Missense_Mutation p.E209K 0.62 deleterious(0.01) unknown(0) TCGA-WE-A8ZO-06 9 130493052 130493052 G A TTC16 Missense_Mutation p.A664T 0.77 tolerated(0.46) benign(0.05) TCGA-WE-A8ZO-06 9 140139619 140139619 C T FAM166A Missense_Mutation p.E192K 0.64 deleterious(0.01) benign(0.345) TCGA-WE-A8ZO-06 9 19360403 19360403 C T DENND4C Silent p.L1725L 0.60 TCGA-WE-A8ZO-06 9 36353211 36353211 A G RNF38 Missense_Mutation p.F343L 0.75 tolerated(0.25) benign(0.387) TCGA-WE-A8ZO-06 9 37740080 37740080 G A FRMPD1 Missense_Mutation p.E519K 0.68 deleterious(0.03) probably_damaging(0.987) TCGA-WE-A8ZO-06 X 103495034 103495034 G A ESX1 Silent p.L366L 0.65 TCGA-WE-A8ZO-06 X 105199531 105199531 G A NRK Missense_Mutation p.S1564N 0.80 deleterious(0) probably_damaging(0.962) TCGA-WE-A8ZO-06 X 107319319 107319319 G A VSIG1 Missense_Mutation p.G270E 0.59 deleterious(0) probably_damaging(0.984) TCGA-WE-A8ZO-06 X 107435805 107435805 G A COL4A6 Missense_Mutation p.P361S 0.55 unknown(0) TCGA-WE-A8ZO-06 X 110490694 110490694 C T CAPN6 Missense_Mutation p.E549K 0.70 tolerated(1) possibly_damaging(0.874) TCGA-WE-A8ZO-06 X 129629090 129629090 G A RP1-274L7.1 Intron 0.78 TCGA-WE-A8ZO-06 X 130678545 130678545 C T OR13H1 Silent p.H166H 0.68 TCGA-WE-A8ZO-06 X 135428084 135428084 C T GPR112 Missense_Mutation p.S740F 0.68 deleterious(0) benign(0.311) TCGA-WE-A8ZO-06 X 153647913 153647913 C T TAZ Silent p.F164F 0.74 TCGA-WE-A8ZO-06 X 24086118 24086118 C T EIF2S3 Missense_Mutation p.S302F 0.72 tolerated(0.06) benign(0.078) TCGA-WE-A8ZO-06 X 35820983 35820983 G A MAGEB16 Missense_Mutation p.E224K 0.68 tolerated(0.36) possibly_damaging(0.498) TCGA-WE-A8ZO-06 X 37665784 37665784 C T CYBB Nonsense_Mutation p.Q487* 0.78 TCGA-WE-A8ZO-06 X 43817930 43817930 G A NDP 5'UTR 0.76 TCGA-WE-A8ZO-06 X 63444853 63444853 G A ASB12 Silent p.L226L 0.65 TCGA-WE-A8ZO-06 X 69649905 69649905 G A GDPD2 Silent p.L433L 0.73 TCGA-WE-A8ZO-06 X 73065638 73065638 G A XIST RNA 0.65 TCGA-WE-A8ZO-06 X 73964153 73964153 G A KIAA2022 Missense_Mutation p.P80L 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZO-06 X 73964154 73964154 G A KIAA2022 Missense_Mutation p.P80S 0.58 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WE-A8ZQ-06 10 102678166 102678166 G C FAM178A Missense_Mutation p.R314T 0.54 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZQ-06 10 105812828 105812828 C T COL17A1 Missense_Mutation p.E634K 0.91 unknown(0) TCGA-WE-A8ZQ-06 10 116032654 116032654 G A VWA2 Missense_Mutation p.R176K 0.84 tolerated(0.24) benign(0.004) TCGA-WE-A8ZQ-06 10 129681991 129681991 C T CLRN3 Silent p.P126P 0.83 TCGA-WE-A8ZQ-06 10 15634224 15634224 C T ITGA8 Missense_Mutation p.S764N 0.86 deleterious(0) probably_damaging(1) TCGA-WE-A8ZQ-06 10 26508063 26508063 C T GAD2 Silent p.F126F 0.48 TCGA-WE-A8ZQ-06 10 55568788 55568788 G A PCDH15 Silent p.V608V 0.40 TCGA-WE-A8ZQ-06 10 71025474 71025474 G T HKDC1 Missense_Mutation p.G836C 0.29 deleterious(0) probably_damaging(1) TCGA-WE-A8ZQ-06 10 89653840 89653840 C - PTEN Frame_Shift_Del p.Y46* 0.50 TCGA-WE-A8ZQ-06 11 124179772 124179772 C T OR8D1 Silent p.V297V 0.34 TCGA-WE-A8ZQ-06 11 125830927 125830927 G T CDON Silent p.P1258P 0.22 TCGA-WE-A8ZQ-06 11 133790880 133790880 G A IGSF9B Missense_Mutation p.P914S 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-WE-A8ZQ-06 11 22833582 22833582 G A GAS2 3'UTR 0.15 TCGA-WE-A8ZQ-06 11 36467948 36467948 C T PRR5L Silent p.S181S 0.19 TCGA-WE-A8ZQ-06 11 43421466 43421466 A C TTC17 Missense_Mutation p.K363Q 0.20 tolerated(0.05) possibly_damaging(0.778) TCGA-WE-A8ZQ-06 11 49204789 49204789 C A FOLH1 Missense_Mutation p.A278S 0.44 deleterious(0.02) benign(0.006) TCGA-WE-A8ZQ-06 11 58949365 58949365 C T DTX4 Missense_Mutation p.P122L 0.22 deleterious(0.01) probably_damaging(0.944) TCGA-WE-A8ZQ-06 11 60696124 60696124 G A TMEM132A Silent p.V186V 0.31 TCGA-WE-A8ZQ-06 11 71164349 71164349 C T NADSYN1 Missense_Mutation p.R3W 0.35 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZQ-06 11 71276890 71276890 C T KRTAP5-10 Missense_Mutation p.S86F 0.43 unknown(0) TCGA-WE-A8ZQ-06 11 71945643 71945643 C T INPPL1 Missense_Mutation p.S800L 0.14 tolerated(0.09) benign(0.13) TCGA-WE-A8ZQ-06 11 89774464 89774464 G A TRIM49C Missense_Mutation p.E369K 0.49 tolerated(0.18) benign(0.012) TCGA-WE-A8ZQ-06 11 92534374 92534374 T G FAT3 Missense_Mutation p.I2732S 0.28 benign(0.066) TCGA-WE-A8ZQ-06 11 9459631 9459631 C T IPO7 Missense_Mutation p.H832Y 0.52 deleterious(0) probably_damaging(0.958) TCGA-WE-A8ZQ-06 11 99944965 99944965 G T CNTN5 Missense_Mutation p.G507C 0.20 deleterious(0) probably_damaging(0.918) TCGA-WE-A8ZQ-06 12 102796113 102796113 C T IGF1 3'UTR 0.44 TCGA-WE-A8ZQ-06 12 120111822 120111822 A G PRKAB1 Missense_Mutation p.K126R 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-WE-A8ZQ-06 12 49443594 49443594 G A KMT2D Silent p.L1259L 0.27 TCGA-WE-A8ZQ-06 12 54796062 54796062 G A ITGA5 Missense_Mutation p.H679Y 0.23 deleterious(0.01) possibly_damaging(0.545) TCGA-WE-A8ZQ-06 12 549836 549836 G A CCDC77 Silent p.E365E 0.29 TCGA-WE-A8ZQ-06 12 55357643 55357643 G A TESPA1 Missense_Mutation p.R180W 0.64 deleterious(0.04) possibly_damaging(0.781) TCGA-WE-A8ZQ-06 12 55846036 55846036 G A OR6C2 Silent p.L13L 0.68 TCGA-WE-A8ZQ-06 12 56234488 56234488 G A MMP19 Silent p.R161R 0.10 TCGA-WE-A8ZQ-06 12 6939891 6939891 C T LEPREL2 Silent p.F313F 0.38 TCGA-WE-A8ZQ-06 12 75434937 75434937 C A KCNC2 3'UTR 0.20 TCGA-WE-A8ZQ-06 12 81675191 81675191 C T PPFIA2 Missense_Mutation p.M1019I 0.18 deleterious(0.01) possibly_damaging(0.874) TCGA-WE-A8ZQ-06 12 8628797 8628797 G A CLEC6A Nonsense_Mutation p.W149* 0.17 TCGA-WE-A8ZQ-06 14 102028622 102028622 C T DIO3 Silent p.V263V 0.24 TCGA-WE-A8ZQ-06 14 106066474 106066474 G C IGHE Missense_Mutation p.R406G 0.52 deleterious(0.03) probably_damaging(0.926) TCGA-WE-A8ZQ-06 14 106208091 106208091 G A IGHG1 Missense_Mutation p.R238W 0.14 tolerated(0.06) benign(0.01) TCGA-WE-A8ZQ-06 14 107048937 107048937 C T IGHV3-53 Missense_Mutation p.G28E 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.63) TCGA-WE-A8ZQ-06 14 19377902 19377903 - A OR11H12 Frame_Shift_Ins p.N106Kfs*31 0.26 TCGA-WE-A8ZQ-06 14 42360792 42360792 G A LRFN5 Silent p.G575G 0.29 TCGA-WE-A8ZQ-06 14 71051037 71051037 G A MED6 3'UTR 0.30 TCGA-WE-A8ZQ-06 14 78374149 78374149 C T ADCK1 Missense_Mutation p.P249S 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZQ-06 14 92562475 92562475 A G ATXN3 Missense_Mutation p.S66P 0.24 deleterious(0) probably_damaging(0.983) TCGA-WE-A8ZQ-06 14 96811680 96811680 C A ATG2B Missense_Mutation p.S123I 0.16 deleterious(0) probably_damaging(0.971) TCGA-WE-A8ZQ-06 15 20496609 20496609 C G CHEK2P2 RNA 0.33 TCGA-WE-A8ZQ-06 15 37110050 37110050 G T CSNK1A1P1 RNA 0.75 TCGA-WE-A8ZQ-06 15 58834806 58834806 C T LIPC Missense_Mutation p.A177V 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-WE-A8ZQ-06 15 63000894 63000894 G A TLN2 Missense_Mutation p.R789Q 0.17 tolerated(0.07) benign(0.066) TCGA-WE-A8ZQ-06 15 78888957 78888957 C T CHRNA3 Missense_Mutation p.E503K 0.25 deleterious(0.03) benign(0.05) TCGA-WE-A8ZQ-06 15 81648927 81648927 T A TMC3 Missense_Mutation p.K251M 0.21 deleterious(0) possibly_damaging(0.573) TCGA-WE-A8ZQ-06 15 99768803 99768803 G A TTC23 Nonsense_Mutation p.Q39* 0.22 TCGA-WE-A8ZQ-06 16 14234530 14234530 C T MKL2 Missense_Mutation p.P23S 0.21 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZQ-06 16 14969105 14969105 G T NOMO1 Missense_Mutation p.W756L 0.12 deleterious(0.02) possibly_damaging(0.904) TCGA-WE-A8ZQ-06 16 17352950 17352950 G A XYLT1 Missense_Mutation p.R270C 0.44 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZQ-06 16 20476855 20476855 C A ACSM2A Missense_Mutation p.P65Q 0.08 deleterious(0.02) possibly_damaging(0.741) TCGA-WE-A8ZQ-06 16 20482924 20482924 C T ACSM2A Silent p.I269I 0.49 TCGA-WE-A8ZQ-06 16 2287575 2287575 G A DNASE1L2 Silent p.A172A 0.53 TCGA-WE-A8ZQ-06 16 23392146 23392146 G A SCNN1B 3'UTR 0.42 TCGA-WE-A8ZQ-06 16 30567397 30567397 C T ZNF764 Silent p.R115R 0.22 TCGA-WE-A8ZQ-06 16 3304514 3304514 C T MEFV Missense_Mutation p.G185E 0.56 deleterious(0.03) benign(0.114) TCGA-WE-A8ZQ-06 16 68009885 68009885 G A DPEP3 Missense_Mutation p.A442V 0.22 tolerated(0.13) benign(0.145) TCGA-WE-A8ZQ-06 16 7102075 7102075 G A RBFOX1 Translation_Start_Site p.M1? 0.37 tolerated_low_confidence(0.07) benign(0.002) TCGA-WE-A8ZQ-06 17 19648349 19648349 C T ALDH3A1 Missense_Mutation p.A32T 0.47 deleterious(0.01) benign(0.398) TCGA-WE-A8ZQ-06 17 27869787 27869787 C T TAOK1 Missense_Mutation p.P918L 0.22 tolerated_low_confidence(0.25) benign(0.002) TCGA-WE-A8ZQ-06 17 37417719 37417719 G A FBXL20 Silent p.I435I 0.61 TCGA-WE-A8ZQ-06 17 39766594 39766594 G A KRT16 Silent p.G423G 0.26 TCGA-WE-A8ZQ-06 17 41020575 41020575 C T AOC4P RNA 0.33 TCGA-WE-A8ZQ-06 17 48750472 48750472 C T ABCC3 Silent p.I794I 0.57 TCGA-WE-A8ZQ-06 17 66303720 66303720 G A ARSG Missense_Mutation p.G29E 0.32 tolerated(1) benign(0.003) TCGA-WE-A8ZQ-06 17 67246647 67246647 G A ABCA5 Nonsense_Mutation p.Q1551* 0.63 TCGA-WE-A8ZQ-06 17 74467769 74467769 G A RHBDF2 Silent p.F839F 0.26 TCGA-WE-A8ZQ-06 18 21017863 21017863 C T TMEM241 5'UTR 0.60 TCGA-WE-A8ZQ-06 18 32887865 32887865 T C ZNF271 RNA 0.24 TCGA-WE-A8ZQ-06 18 50912439 50912439 C A DCC Missense_Mutation p.L796I 0.24 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZQ-06 18 67563065 67563065 C T CD226 Missense_Mutation p.S200N 0.36 tolerated(0.06) benign(0.393) TCGA-WE-A8ZQ-06 18 6950861 6950861 G A LAMA1 Missense_Mutation p.L2773F 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-WE-A8ZQ-06 19 10741812 10741812 C T SLC44A2 Missense_Mutation p.P109S 0.39 tolerated(0.24) benign(0.004) TCGA-WE-A8ZQ-06 19 14150597 14150597 G A IL27RA Missense_Mutation p.V137M 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-WE-A8ZQ-06 19 1782967 1782967 G A ATP8B3 3'UTR 0.27 TCGA-WE-A8ZQ-06 19 18377724 18377724 G A KIAA1683 Missense_Mutation p.P209L 0.27 deleterious_low_confidence(0.02) benign(0.003) TCGA-WE-A8ZQ-06 19 18377725 18377725 G A KIAA1683 Missense_Mutation p.P209S 0.29 deleterious_low_confidence(0.04) benign(0.018) TCGA-WE-A8ZQ-06 19 38948921 38948921 A G RYR1 Missense_Mutation p.H719R 0.24 probably_damaging(0.992) TCGA-WE-A8ZQ-06 19 39590937 39590937 C T PAPL Silent p.P192P 0.29 TCGA-WE-A8ZQ-06 19 40328441 40328441 G A FBL Missense_Mutation p.R198C 0.35 deleterious(0.04) possibly_damaging(0.749) TCGA-WE-A8ZQ-06 19 41442005 41442005 C T CYP2B7P RNA 0.66 TCGA-WE-A8ZQ-06 19 50102992 50102992 C T PRR12 Missense_Mutation p.S1381F 0.26 possibly_damaging(0.683) TCGA-WE-A8ZQ-06 19 51914404 51914404 G A SIGLEC10 Silent p.A681A 0.66 TCGA-WE-A8ZQ-06 19 5220055 5220055 G A PTPRS Silent p.F1220F 0.26 TCGA-WE-A8ZQ-06 19 54445678 54445678 C T CACNG7 3'UTR 0.15 TCGA-WE-A8ZQ-06 19 54687426 54687426 G C MBOAT7 Nonsense_Mutation p.Y157* 0.05 TCGA-WE-A8ZQ-06 19 55494487 55494487 G A NLRP2 Missense_Mutation p.G474E 0.55 tolerated(0.12) benign(0.443) TCGA-WE-A8ZQ-06 19 55897966 55897966 C T RPL28 Missense_Mutation p.S37F 0.31 deleterious(0.01) possibly_damaging(0.81) TCGA-WE-A8ZQ-06 19 57868390 57868390 C T ZNF304 Missense_Mutation p.H385Y 0.25 deleterious(0) probably_damaging(0.973) TCGA-WE-A8ZQ-06 19 8145960 8145960 G A FBN3 Silent p.L2460L 0.58 TCGA-WE-A8ZQ-06 19 9047175 9047175 C T MUC16 Missense_Mutation p.E11486K 0.57 benign(0.007) TCGA-WE-A8ZQ-06 19 9058414 9058414 G A MUC16 Missense_Mutation p.P9678S 0.51 unknown(0) TCGA-WE-A8ZQ-06 19 9075674 9075674 C T MUC16 Nonsense_Mutation p.W3924* 0.53 TCGA-WE-A8ZQ-06 1 10197139 10197139 C T UBE4B Missense_Mutation p.P747S 0.25 tolerated(0.22) benign(0.05) TCGA-WE-A8ZQ-06 1 10197140 10197140 C T UBE4B Missense_Mutation p.P747L 0.24 tolerated(0.13) benign(0.01) TCGA-WE-A8ZQ-06 1 103343489 103343489 T G COL11A1 3'UTR 0.80 TCGA-WE-A8ZQ-06 1 10434498 10434498 C T KIF1B Missense_Mutation p.P1645S 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8ZQ-06 1 11766537 11766537 G A DRAXIN Silent p.Q74Q 0.21 TCGA-WE-A8ZQ-06 1 1262906 1262906 G A GLTPD1 Silent p.A136A 0.29 TCGA-WE-A8ZQ-06 1 12806270 12806270 G T C1orf158 5'UTR 0.27 TCGA-WE-A8ZQ-06 1 150445130 150445130 C T RPRD2 Missense_Mutation p.P1236S 0.16 tolerated_low_confidence(0.14) benign(0.006) TCGA-WE-A8ZQ-06 1 151001400 151001400 C T PRUNE Missense_Mutation p.H305Y 0.21 tolerated(0.47) benign(0.393) TCGA-WE-A8ZQ-06 1 152484100 152484100 C A LCE5A Silent p.P30P 0.36 TCGA-WE-A8ZQ-06 1 152785134 152785134 G A LCE1B Missense_Mutation p.G71E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8ZQ-06 1 153925789 153925789 G A CRTC2 Missense_Mutation p.T187I 0.26 tolerated(0.07) possibly_damaging(0.727) TCGA-WE-A8ZQ-06 1 156228802 156228802 G A SMG5 Silent p.F812F 0.25 TCGA-WE-A8ZQ-06 1 183253106 183253106 C T NMNAT2 Intron 0.10 TCGA-WE-A8ZQ-06 1 186092172 186092172 C T HMCN1 Missense_Mutation p.P4107S 0.15 benign(0.024) TCGA-WE-A8ZQ-06 1 202287440 202287440 C T LGR6 Missense_Mutation p.S670F 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-WE-A8ZQ-06 1 204396773 204396773 T G PIK3C2B Intron 0.14 TCGA-WE-A8ZQ-06 1 204396797 204396797 C G PIK3C2B Missense_Mutation p.M1522I 0.13 deleterious(0) probably_damaging(0.968) TCGA-WE-A8ZQ-06 1 204955189 204955189 G A NFASC Intron 0.38 TCGA-WE-A8ZQ-06 1 205811875 205811875 C T PM20D1 Missense_Mutation p.E278K 0.18 deleterious(0) probably_damaging(0.98) TCGA-WE-A8ZQ-06 1 213445935 213445935 T G RPS6KC1 Missense_Mutation p.H1053Q 0.56 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZQ-06 1 216692708 216692708 C T ESRRG Missense_Mutation p.M318I 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-WE-A8ZQ-06 1 230398715 230398715 T G GALNT2 Missense_Mutation p.F426C 0.31 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZQ-06 1 247835605 247835605 G A OR13G1 Missense_Mutation p.L247F 0.15 tolerated(0.13) probably_damaging(0.935) TCGA-WE-A8ZQ-06 1 248512379 248512379 C T OR14C36 Silent p.L101L 0.39 TCGA-WE-A8ZQ-06 1 27088756 27088756 C T ARID1A Nonsense_Mutation p.Q789* 0.35 TCGA-WE-A8ZQ-06 1 34330089 34330089 C T HMGB4 Silent p.S99S 0.39 TCGA-WE-A8ZQ-06 1 35227119 35227119 A C GJB4 Silent p.S88S 0.82 TCGA-WE-A8ZQ-06 1 35470752 35470752 G A ZMYM6 Silent p.N645N 0.26 TCGA-WE-A8ZQ-06 1 36859282 36859282 A C LSM10 3'UTR 0.23 TCGA-WE-A8ZQ-06 1 46977876 46977876 G A DMBX1 Missense_Mutation p.E282K 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.78) TCGA-WE-A8ZQ-06 1 6592063 6592063 G A NOL9 Missense_Mutation p.P538S 0.24 tolerated(0.31) benign(0.074) TCGA-WE-A8ZQ-06 20 17240946 17240946 G A PCSK2 Missense_Mutation p.R80K 0.15 tolerated(0.9) benign(0) TCGA-WE-A8ZQ-06 20 25273059 25273059 C T PYGB Silent p.L663L 0.20 TCGA-WE-A8ZQ-06 20 36974980 36974980 C T LBP Missense_Mutation p.P21S 0.26 tolerated(0.53) unknown(0) TCGA-WE-A8ZQ-06 20 39991292 39991292 C T EMILIN3 Missense_Mutation p.R306Q 0.34 tolerated(0.75) benign(0) TCGA-WE-A8ZQ-06 20 45130956 45130956 C T ZNF334 Missense_Mutation p.R341K 0.38 tolerated(0.07) benign(0.025) TCGA-WE-A8ZQ-06 20 6060088 6060088 G A FERMT1 Missense_Mutation p.R619W 0.23 deleterious(0) probably_damaging(0.959) TCGA-WE-A8ZQ-06 20 60912925 60912925 G A LAMA5 Missense_Mutation p.P654L 0.19 possibly_damaging(0.673) TCGA-WE-A8ZQ-06 21 39671756 39671756 G C KCNJ15 Silent p.G191G 0.26 TCGA-WE-A8ZQ-06 21 44839811 44839811 C T SIK1 Silent p.R349R 0.46 TCGA-WE-A8ZQ-06 21 44839812 44839812 C T SIK1 Missense_Mutation p.R349Q 0.46 deleterious(0.02) possibly_damaging(0.559) TCGA-WE-A8ZQ-06 22 37771106 37771106 C T ELFN2 Missense_Mutation p.D157N 0.52 deleterious(0.04) probably_damaging(1) TCGA-WE-A8ZQ-06 2 128412446 128412446 G T LIMS2 Missense_Mutation p.H90N 0.32 deleterious(0.04) benign(0.297) TCGA-WE-A8ZQ-06 2 141208152 141208152 C T LRP1B Missense_Mutation p.E3348K 0.29 possibly_damaging(0.621) TCGA-WE-A8ZQ-06 2 179475887 179475887 T C TTN Missense_Mutation p.K16990R 0.33 TCGA-WE-A8ZQ-06 2 179579111 179579111 G A TTN Missense_Mutation p.S8797L 0.59 TCGA-WE-A8ZQ-06 2 179588254 179588254 C T TTN Silent p.V7191V 0.23 TCGA-WE-A8ZQ-06 2 179641915 179641915 T C TTN Missense_Mutation p.N1592S 0.54 TCGA-WE-A8ZQ-06 2 179732821 179732821 G A CCDC141 Missense_Mutation p.R836C 0.60 deleterious(0) possibly_damaging(0.54) TCGA-WE-A8ZQ-06 2 215884484 215884484 C T ABCA12 Missense_Mutation p.E442K 0.31 tolerated(0.25) benign(0.003) TCGA-WE-A8ZQ-06 2 27545409 27545409 G A MPV17 Intron 0.28 TCGA-WE-A8ZQ-06 2 27890240 27890240 G C SLC4A1AP Missense_Mutation p.G376A 0.28 deleterious(0) probably_damaging(0.928) TCGA-WE-A8ZQ-06 2 29606678 29606678 C T ALK Missense_Mutation p.R401Q 0.29 tolerated(0.48) probably_damaging(0.998) TCGA-WE-A8ZQ-06 2 37035894 37035894 G A VIT Missense_Mutation p.E557K 0.30 deleterious(0) probably_damaging(0.963) TCGA-WE-A8ZQ-06 2 97520087 97520087 G A ANKRD39 Silent p.G64G 0.33 TCGA-WE-A8ZQ-06 2 98737762 98737762 G A VWA3B Silent p.R181R 0.61 TCGA-WE-A8ZQ-06 2 98737763 98737763 G A VWA3B Missense_Mutation p.V182I 0.62 tolerated(0.14) benign(0.071) TCGA-WE-A8ZQ-06 3 120959338 120959338 G A STXBP5L Missense_Mutation p.E462K 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZQ-06 3 126747167 126747167 C T PLXNA1 Silent p.A1551A 0.33 TCGA-WE-A8ZQ-06 3 130292935 130292935 G A COL6A6 Missense_Mutation p.R1038Q 0.21 tolerated(0.77) benign(0.028) TCGA-WE-A8ZQ-06 3 134968185 134968185 C A EPHB1 Missense_Mutation p.Q900K 0.39 tolerated(0.28) benign(0.147) TCGA-WE-A8ZQ-06 3 138763066 138763066 C T PRR23C Missense_Mutation p.E133K 0.64 deleterious(0.03) probably_damaging(0.996) TCGA-WE-A8ZQ-06 3 161146964 161146964 G A RP11-3P17.5 RNA 0.25 TCGA-WE-A8ZQ-06 3 186838907 186838907 A C RPL39L 3'UTR 0.61 TCGA-WE-A8ZQ-06 3 33866790 33866790 C T PDCD6IP Silent p.L192L 0.28 TCGA-WE-A8ZQ-06 3 42678875 42678875 G A NKTR Missense_Mutation p.R560Q 0.21 tolerated_low_confidence(1) unknown(0) TCGA-WE-A8ZQ-06 3 49067990 49067990 G A QRICH1 Silent p.V742V 0.20 TCGA-WE-A8ZQ-06 3 49154923 49154923 G A USP19 Silent p.L185L 0.59 TCGA-WE-A8ZQ-06 3 54676166 54676166 G T CACNA2D3 Silent p.T355T 0.48 TCGA-WE-A8ZQ-06 3 56330220 56330220 G T ERC2 Silent p.R301R 0.25 TCGA-WE-A8ZQ-06 3 64527012 64527012 C T ADAMTS9 Missense_Mutation p.E1791K 0.58 deleterious(0) probably_damaging(1) TCGA-WE-A8ZQ-06 3 7188172 7188172 G C GRM7 Missense_Mutation p.E185Q 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-WE-A8ZQ-06 3 93699177 93699177 C T ARL13B 5'UTR 0.34 TCGA-WE-A8ZQ-06 4 156135439 156135439 G A NPY2R Nonsense_Mutation p.W116* 0.25 TCGA-WE-A8ZQ-06 4 178881973 178881973 C T LINC01098 5'UTR 0.67 TCGA-WE-A8ZQ-06 4 185350179 185350179 C A IRF2 Nonsense_Mutation p.E14* 0.14 TCGA-WE-A8ZQ-06 4 20493400 20493400 G A SLIT2 Missense_Mutation p.M264I 0.37 tolerated(0.16) benign(0.013) TCGA-WE-A8ZQ-06 4 265735 265735 T G ZNF732 Missense_Mutation p.K304T 0.38 deleterious(0) probably_damaging(0.984) TCGA-WE-A8ZQ-06 4 55143613 55143613 A G PDGFRA Silent p.L615L 0.38 TCGA-WE-A8ZQ-06 4 6051573 6051573 C T JAKMIP1 Silent p.K645K 0.63 TCGA-WE-A8ZQ-06 4 69533830 69533830 A T UGT2B15 Missense_Mutation p.F267L 0.27 deleterious(0) possibly_damaging(0.881) TCGA-WE-A8ZQ-06 4 80246759 80246759 C T NAA11 Missense_Mutation p.M91I 0.62 deleterious(0) benign(0.247) TCGA-WE-A8ZQ-06 5 130695024 130695024 C T CDC42SE2 5'UTR 0.44 TCGA-WE-A8ZQ-06 5 131892995 131892995 G A RAD50 5'UTR 0.25 TCGA-WE-A8ZQ-06 5 140896380 140896380 G A DIAPH1 3'UTR 0.22 TCGA-WE-A8ZQ-06 5 146730704 146730704 C G STK32A Silent p.T183T 0.15 TCGA-WE-A8ZQ-06 5 175305930 175305930 G A CPLX2 Silent p.G17G 0.55 TCGA-WE-A8ZQ-06 5 176017647 176017647 C T CDHR2 Silent p.V1166V 0.48 TCGA-WE-A8ZQ-06 5 178555072 178555072 C T ADAMTS2 Missense_Mutation p.M835I 0.44 tolerated(1) benign(0.028) TCGA-WE-A8ZQ-06 5 180376245 180376245 G A BTNL8 Missense_Mutation p.R281K 0.95 tolerated(0.1) benign(0.017) TCGA-WE-A8ZQ-06 5 43039434 43039434 G A ANXA2R 3'UTR 0.33 TCGA-WE-A8ZQ-06 5 68665385 68665385 G A TAF9 Intron 0.48 TCGA-WE-A8ZQ-06 5 68665386 68665386 G A TAF9 Intron 0.48 TCGA-WE-A8ZQ-06 5 90106258 90106258 G A GPR98 Missense_Mutation p.G5061R 0.46 benign(0.241) TCGA-WE-A8ZQ-06 6 117665324 117665324 G C ROS1 Missense_Mutation p.L1475V 0.06 tolerated(0.41) benign(0.282) TCGA-WE-A8ZQ-06 6 118635280 118635280 C T SLC35F1 Silent p.P364P 0.43 TCGA-WE-A8ZQ-06 6 152542021 152542021 C T SYNE1 Missense_Mutation p.D7273N 0.91 benign(0.347) TCGA-WE-A8ZQ-06 6 161135828 161135828 G A PLG Missense_Mutation p.E184K 1.00 tolerated(0.06) benign(0.019) TCGA-WE-A8ZQ-06 6 24701919 24701919 T C ACOT13 3'UTR 0.16 TCGA-WE-A8ZQ-06 6 25799039 25799039 T G SLC17A1 Missense_Mutation p.K460Q 0.21 tolerated(0.08) benign(0.11) TCGA-WE-A8ZQ-06 6 32084831 32084831 G A ATF6B Silent p.P556P 0.21 TCGA-WE-A8ZQ-06 6 47686149 47686149 G A GPR115 Missense_Mutation p.G687R 0.58 deleterious(0) benign(0.083) TCGA-WE-A8ZQ-06 6 52992878 52992878 C A GCM1 3'UTR 0.23 TCGA-WE-A8ZQ-06 6 55381326 55381326 G A HMGCLL1 Missense_Mutation p.L155F 0.18 deleterious(0.02) possibly_damaging(0.826) TCGA-WE-A8ZQ-06 6 56918696 56918696 A G KIAA1586 Missense_Mutation p.K467E 0.56 tolerated(0.37) possibly_damaging(0.53) TCGA-WE-A8ZQ-06 6 86324394 86324394 T C SYNCRIP 3'UTR 0.40 TCGA-WE-A8ZQ-06 7 100490047 100490047 C T ACHE Silent p.G487G 0.14 TCGA-WE-A8ZQ-06 7 122342708 122342708 T C RNF148 Missense_Mutation p.N33D 0.17 tolerated(0.19) benign(0.006) TCGA-WE-A8ZQ-06 7 128496630 128496630 G A FLNC Missense_Mutation p.R2437Q 0.32 tolerated(0.58) probably_damaging(0.999) TCGA-WE-A8ZQ-06 7 131913195 131913195 C T PLXNA4 Silent p.K546K 0.18 TCGA-WE-A8ZQ-06 7 137565171 137565171 G T CREB3L2 3'UTR 0.14 TCGA-WE-A8ZQ-06 7 139717546 139717546 C T TBXAS1 Silent p.L527L 0.69 TCGA-WE-A8ZQ-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.68 deleterious(0) probably_damaging(0.967) TCGA-WE-A8ZQ-06 7 142651556 142651556 G A KEL Missense_Mutation p.A244V 0.29 tolerated(0.31) possibly_damaging(0.685) TCGA-WE-A8ZQ-06 7 148702453 148702453 C G PDIA4 Missense_Mutation p.W434C 0.16 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZQ-06 7 150417209 150417209 G A GIMAP1 Silent p.G39G 0.19 TCGA-WE-A8ZQ-06 7 150938623 150938623 G A SMARCD3 Silent p.D298D 0.55 TCGA-WE-A8ZQ-06 7 1588171 1588171 G A TMEM184A Silent p.F266F 0.61 TCGA-WE-A8ZQ-06 7 26232173 26232173 C T HNRNPA2B1 Missense_Mutation p.G342E 0.65 tolerated_low_confidence(0.11) benign(0.012) TCGA-WE-A8ZQ-06 7 26232174 26232174 C T HNRNPA2B1 Missense_Mutation p.G342R 0.65 tolerated_low_confidence(0.43) benign(0.003) TCGA-WE-A8ZQ-06 7 44572997 44572997 C T NPC1L1 Intron 0.10 TCGA-WE-A8ZQ-06 7 82538248 82538248 C T PCLO Missense_Mutation p.R4461Q 0.23 unknown(0) TCGA-WE-A8ZQ-06 7 92763925 92763925 C T SAMD9L Missense_Mutation p.G454R 0.65 deleterious(0) probably_damaging(1) TCGA-WE-A8ZQ-06 7 97851045 97851045 G A TECPR1 Missense_Mutation p.P1029S 0.15 deleterious(0) probably_damaging(0.954) TCGA-WE-A8ZQ-06 7 99084912 99084912 A G ZNF789 Missense_Mutation p.Q360R 0.18 tolerated(0.07) possibly_damaging(0.468) TCGA-WE-A8ZQ-06 8 101730327 101730327 G A PABPC1 Silent p.I125I 0.16 TCGA-WE-A8ZQ-06 8 102381922 102381922 G A NACAP1 RNA 0.32 TCGA-WE-A8ZQ-06 8 10468607 10468607 C T RP1L1 Missense_Mutation p.E1001K 0.31 possibly_damaging(0.811) TCGA-WE-A8ZQ-06 8 114111130 114111130 G A CSMD3 Missense_Mutation p.P258S 0.35 deleterious(0) benign(0.113) TCGA-WE-A8ZQ-06 8 118159241 118159241 G A SLC30A8 Silent p.E40E 0.26 TCGA-WE-A8ZQ-06 8 1497007 1497007 G C DLGAP2 Missense_Mutation p.G50R 0.31 tolerated(0.54) benign(0.001) TCGA-WE-A8ZQ-06 8 17072765 17072765 C T ZDHHC2 Missense_Mutation p.P324S 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-WE-A8ZQ-06 8 27328674 27328674 T C CHRNA2 5'UTR 0.50 TCGA-WE-A8ZQ-06 8 30701132 30701132 G A TEX15 Missense_Mutation p.S1801F 0.19 deleterious(0) probably_damaging(0.954) TCGA-WE-A8ZQ-06 8 31498202 31498202 G A NRG1 Silent p.R87R 0.33 TCGA-WE-A8ZQ-06 9 116045682 116045682 T C PRPF4 Silent p.L193L 0.27 TCGA-WE-A8ZQ-06 9 131186849 131186849 C T CERCAM Missense_Mutation p.P241L 0.31 tolerated(0.06) possibly_damaging(0.703) TCGA-WE-A8ZQ-06 9 133907492 133907492 G A LAMC3 Missense_Mutation p.D247N 0.60 deleterious(0) probably_damaging(0.958) TCGA-WE-A8ZQ-06 9 21239384 21239384 C T IFNA14 Missense_Mutation p.R184K 0.09 tolerated(0.17) benign(0.026) TCGA-WE-A8ZQ-06 9 32784559 32784559 G A TMEM215 Silent p.Q126Q 0.23 TCGA-WE-A8ZQ-06 9 34997191 34997191 C T DNAJB5 Missense_Mutation p.R442C 0.48 tolerated(0.1) possibly_damaging(0.827) TCGA-WE-A8ZQ-06 9 43627706 43627706 G A SPATA31A6 Silent p.V327V 0.23 TCGA-WE-A8ZQ-06 9 80919814 80919814 G T PSAT1 Missense_Mutation p.G119W 0.18 deleterious(0.01) possibly_damaging(0.524) TCGA-WE-A8ZQ-06 X 123630919 123630919 A T TENM1 Missense_Mutation p.N1214K 0.45 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZQ-06 X 123630920 123630920 T C TENM1 Missense_Mutation p.N1214S 0.46 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZQ-06 X 132161149 132161149 G A USP26 Missense_Mutation p.A367V 0.95 tolerated(0.28) benign(0.168) TCGA-WE-A8ZQ-06 X 134989970 134989970 G A SAGE1 Missense_Mutation p.D377N 0.96 deleterious(0.02) benign(0.026) TCGA-WE-A8ZQ-06 X 154158760 154158760 C T F8 Missense_Mutation p.G1102D 0.95 tolerated(0.75) benign(0.008) TCGA-WE-A8ZQ-06 X 50659330 50659330 G A BMP15 Missense_Mutation p.R301H 0.47 tolerated(1) benign(0.031) TCGA-WE-A8ZQ-06 X 72667089 72667089 G A CDX4 5'Flank 0.97 TCGA-WE-A8ZQ-06 X 8433420 8433420 G A VCX3B 5'UTR 0.31 TCGA-WE-A8ZR-06 10 74899099 74899099 T C ECD Silent p.K496K 0.84 TCGA-WE-A8ZR-06 12 121125235 121125235 G A MLEC Missense_Mutation p.E46K 0.17 tolerated(0.18) benign(0.225) TCGA-WE-A8ZR-06 12 121125316 121125316 G A MLEC Missense_Mutation p.E73K 0.33 tolerated(0.62) benign(0.028) TCGA-WE-A8ZR-06 12 130842051 130842051 G A PIWIL1 Missense_Mutation p.A540T 0.61 tolerated(0.09) benign(0.017) TCGA-WE-A8ZR-06 12 95603582 95603582 C T FGD6 Missense_Mutation p.R493Q 0.08 deleterious(0) possibly_damaging(0.477) TCGA-WE-A8ZR-06 14 24839461 24839461 G A NFATC4 Missense_Mutation p.R349H 0.42 tolerated(0.33) probably_damaging(0.995) TCGA-WE-A8ZR-06 14 67431968 67431968 A T GPHN Missense_Mutation p.S297C 0.34 deleterious(0.04) probably_damaging(0.986) TCGA-WE-A8ZR-06 14 94088193 94088193 C T UNC79 Silent p.I1361I 0.34 TCGA-WE-A8ZR-06 16 28508748 28508748 G A APOBR Missense_Mutation p.E796K 0.41 tolerated(0.08) possibly_damaging(0.486) TCGA-WE-A8ZR-06 16 67968437 67968437 C A PSMB10 3'UTR 0.36 TCGA-WE-A8ZR-06 17 40975886 40975886 A T BECN1 Missense_Mutation p.S4T 0.41 tolerated_low_confidence(0.15) benign(0.014) TCGA-WE-A8ZR-06 17 42848989 42848989 G A ADAM11 Missense_Mutation p.R140Q 0.30 deleterious(0) possibly_damaging(0.88) TCGA-WE-A8ZR-06 17 48046729 48046730 - G DLX4 5'UTR 0.22 TCGA-WE-A8ZR-06 17 53852193 53852193 G T PCTP Silent p.P184P 0.28 TCGA-WE-A8ZR-06 19 41354273 41354273 C T CYP2A6 Missense_Mutation p.D169N 0.52 benign(0.09) TCGA-WE-A8ZR-06 19 9297441 9297441 G T OR7D2 3'UTR 0.24 TCGA-WE-A8ZR-06 1 243589748 243589748 A T SDCCAG8 Missense_Mutation p.S625C 0.29 deleterious(0.04) benign(0.119) TCGA-WE-A8ZR-06 1 246929361 246929361 G T SCCPDH Missense_Mutation p.E368D 0.12 tolerated(0.11) benign(0.024) TCGA-WE-A8ZR-06 1 68610288 68610288 G A WLS Silent p.C440C 0.62 TCGA-WE-A8ZR-06 20 61978132 61978132 C T CHRNA4 Silent p.T614T 0.69 TCGA-WE-A8ZR-06 21 28338188 28338188 C T ADAMTS5 Missense_Mutation p.E175K 0.42 tolerated(0.31) benign(0.16) TCGA-WE-A8ZR-06 21 46228925 46228925 G A SUMO3 Intron 0.56 TCGA-WE-A8ZR-06 22 38474609 38474609 C T SLC16A8 Missense_Mutation p.C434Y 0.07 tolerated(0.99) benign(0.14) TCGA-WE-A8ZR-06 2 125521334 125521334 G T CNTNAP5 Nonsense_Mutation p.E773* 0.16 TCGA-WE-A8ZR-06 2 37507042 37507042 A T PRKD3 Missense_Mutation p.I340K 0.46 tolerated(0.23) benign(0.017) TCGA-WE-A8ZR-06 2 50779868 50779868 T C NRXN1 Missense_Mutation p.D579G 0.17 deleterious(0) probably_damaging(0.985) TCGA-WE-A8ZR-06 2 85554372 85554372 T A TGOLN2 Missense_Mutation p.Q161H 0.38 deleterious(0.04) benign(0.07) TCGA-WE-A8ZR-06 3 122459526 122459526 C A HSPBAP1 Missense_Mutation p.G378V 0.39 tolerated(0.24) benign(0.288) TCGA-WE-A8ZR-06 4 110223090 110223090 C T COL25A1 Missense_Mutation p.R29Q 0.08 tolerated(0.4) unknown(0) TCGA-WE-A8ZR-06 5 79029748 79029748 C T CMYA5 Silent p.I1720I 0.28 TCGA-WE-A8ZR-06 6 36982701 36982701 C T FGD2 Missense_Mutation p.R306C 0.11 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZR-06 6 7606410 7606410 C T SNRNP48 Missense_Mutation p.S318L 0.07 deleterious(0.03) benign(0.006) TCGA-WE-A8ZR-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-WE-A8ZR-06 8 101190115 101190115 G A SPAG1 Missense_Mutation p.M124I 0.24 tolerated(0.21) benign(0.009) TCGA-WE-A8ZR-06 8 125082720 125082720 G A FER1L6 Missense_Mutation p.D1283N 0.41 deleterious(0) benign(0.011) TCGA-WE-A8ZR-06 8 77763207 77763207 G A ZFHX4 Silent p.P1350P 0.55 TCGA-WE-A8ZR-06 9 116999996 116999996 G T COL27A1 Splice_Site p.X909_splice 0.48 TCGA-WE-A8ZT-06 10 106152021 106152021 C T CCDC147 Missense_Mutation p.R466C 0.68 deleterious(0.04) probably_damaging(0.947) TCGA-WE-A8ZT-06 10 133967450 133967450 G A JAKMIP3 Missense_Mutation p.E724K 0.70 tolerated(0.09) possibly_damaging(0.793) TCGA-WE-A8ZT-06 10 135097491 135097491 G A TUBGCP2 Silent p.F708F 0.64 TCGA-WE-A8ZT-06 10 135440237 135440237 C T FRG2B Missense_Mutation p.G4R 0.12 deleterious(0.02) possibly_damaging(0.808) TCGA-WE-A8ZT-06 10 18169505 18169505 G A MRC1 Missense_Mutation p.R924Q 0.43 deleterious(0) probably_damaging(0.937) TCGA-WE-A8ZT-06 10 21415048 21415048 C T C10orf113 Missense_Mutation p.G58S 0.41 tolerated_low_confidence(0.19) probably_damaging(0.931) TCGA-WE-A8ZT-06 10 28229677 28229677 C T ARMC4 Missense_Mutation p.E601K 0.27 tolerated(0.17) benign(0.002) TCGA-WE-A8ZT-06 10 30318428 30318428 C T KIAA1462 Missense_Mutation p.G217R 0.44 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZT-06 10 54048737 54048737 G A PRKG1 Missense_Mutation p.D627N 0.69 deleterious(0.01) possibly_damaging(0.523) TCGA-WE-A8ZT-06 10 5415890 5415890 G A UCN3 Silent p.S69S 0.42 TCGA-WE-A8ZT-06 10 64430181 64430181 C T ZNF365 3'UTR 0.71 TCGA-WE-A8ZT-06 10 79745010 79745010 G T POLR3A Missense_Mutation p.H1054N 0.71 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZT-06 10 87614301 87614301 T A GRID1 Missense_Mutation p.E395D 0.54 tolerated(0.08) probably_damaging(0.997) TCGA-WE-A8ZT-06 10 88950366 88950366 C T FAM35A Missense_Mutation p.P812S 0.68 deleterious(0) possibly_damaging(0.558) TCGA-WE-A8ZT-06 10 89720876 89720876 G A PTEN Splice_Site p.X342_splice 0.63 TCGA-WE-A8ZT-06 10 91143661 91143661 G A IFIT1B Silent p.R197R 0.66 TCGA-WE-A8ZT-06 10 95083115 95083115 C T MYOF Missense_Mutation p.G1758R 0.62 deleterious(0.02) probably_damaging(1) TCGA-WE-A8ZT-06 11 11374210 11374210 T C CSNK2A3 Missense_Mutation p.M153V 0.30 deleterious(0.01) possibly_damaging(0.684) TCGA-WE-A8ZT-06 11 116692101 116692101 G A APOA4 Missense_Mutation p.P225S 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 11 118083718 118083718 C T AMICA1 Intron 0.54 TCGA-WE-A8ZT-06 11 120980043 120980043 C T TECTA Nonsense_Mutation p.R108* 0.41 TCGA-WE-A8ZT-06 11 124252438 124252438 C T OR8B2 Missense_Mutation p.E268K 0.43 deleterious_low_confidence(0) benign(0.403) TCGA-WE-A8ZT-06 11 124561675 124561675 C T SPA17 Silent p.I103I 0.38 TCGA-WE-A8ZT-06 11 133712380 133712380 C T SPATA19 Missense_Mutation p.S146N 0.31 deleterious(0.01) possibly_damaging(0.682) TCGA-WE-A8ZT-06 11 1477676 1477676 C T BRSK2 Silent p.F635F 0.30 TCGA-WE-A8ZT-06 11 19256041 19256041 G A E2F8 Missense_Mutation p.S265F 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 11 22770678 22770678 G A GAS2 Silent p.E162E 0.32 TCGA-WE-A8ZT-06 11 26681850 26681850 T C ANO3 Silent p.I935I 0.44 TCGA-WE-A8ZT-06 11 26714073 26714073 G A SLC5A12 Silent p.L372L 0.30 TCGA-WE-A8ZT-06 11 293918 293918 C T ATHL1 Missense_Mutation p.P568L 0.24 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 11 30033520 30033520 G A KCNA4 Nonsense_Mutation p.Q236* 0.44 TCGA-WE-A8ZT-06 11 32456294 32456294 G A WT1 Missense_Mutation p.P200S 0.29 tolerated_low_confidence(0.14) benign(0.161) TCGA-WE-A8ZT-06 11 4389419 4389419 G A OR52B4 Missense_Mutation p.S36F 0.38 deleterious(0.05) benign(0.076) TCGA-WE-A8ZT-06 11 4674243 4674243 C T OR51E1 Missense_Mutation p.P163S 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8ZT-06 11 5173472 5173472 C T OR52A1 Missense_Mutation p.G43E 0.44 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 11 5246842 5246842 G A HBB Missense_Mutation p.H144Y 0.44 tolerated(0.1) benign(0.013) TCGA-WE-A8ZT-06 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.44 deleterious_low_confidence(0) benign(0.072) TCGA-WE-A8ZT-06 11 5530040 5530040 C T UBQLN3 Missense_Mutation p.G250D 0.32 deleterious(0) probably_damaging(0.972) TCGA-WE-A8ZT-06 11 55406452 55406452 G A OR4P4 Missense_Mutation p.V207M 0.28 deleterious(0.03) benign(0.292) TCGA-WE-A8ZT-06 11 55418383 55418383 G A OR4S2 Missense_Mutation p.E2K 0.28 tolerated(0.18) benign(0.005) TCGA-WE-A8ZT-06 11 5719727 5719727 C T TRIM22 Silent p.I234I 0.50 TCGA-WE-A8ZT-06 11 5862987 5862987 G C OR52E6 Missense_Mutation p.I47M 0.41 deleterious(0.02) benign(0.143) TCGA-WE-A8ZT-06 11 62293428 62293428 G A AHNAK Missense_Mutation p.P2821S 0.30 probably_damaging(0.997) TCGA-WE-A8ZT-06 11 63141401 63141401 G A SLC22A9 Missense_Mutation p.G233R 0.16 tolerated(0.5) possibly_damaging(0.61) TCGA-WE-A8ZT-06 11 63235845 63235845 G A HRASLS5 Silent p.V156V 0.37 TCGA-WE-A8ZT-06 11 63320420 63320420 G A HRASLS2 3'UTR 0.47 TCGA-WE-A8ZT-06 11 64673956 64673956 G A ATG2A Silent p.F1011F 0.50 TCGA-WE-A8ZT-06 11 68702879 68702879 C T IGHMBP2 Missense_Mutation p.S582F 0.30 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 11 76370556 76370556 G A LRRC32 3'UTR 0.54 TCGA-WE-A8ZT-06 11 85742556 85742556 G A PICALM Silent p.F76F 0.44 TCGA-WE-A8ZT-06 11 86111730 86111730 A C CCDC81 Silent p.S256S 0.09 TCGA-WE-A8ZT-06 11 94113264 94113264 C T GPR83 3'UTR 0.53 TCGA-WE-A8ZT-06 11 95598762 95598762 G A MTMR2 Intron 0.32 TCGA-WE-A8ZT-06 12 102313913 102313913 G C DRAM1 Silent p.A202A 0.31 TCGA-WE-A8ZT-06 12 106460710 106460710 C T NUAK1 Missense_Mutation p.R619Q 0.32 tolerated(0.58) benign(0.003) TCGA-WE-A8ZT-06 12 119563285 119563285 G A SRRM4 Splice_Site p.X205_splice 0.31 TCGA-WE-A8ZT-06 12 121437273 121437273 T A HNF1A Intron 0.51 TCGA-WE-A8ZT-06 12 124886973 124886973 C T NCOR2 Silent p.E539E 0.41 TCGA-WE-A8ZT-06 12 132498114 132498114 C T EP400 Missense_Mutation p.P1231S 0.10 unknown(0) TCGA-WE-A8ZT-06 12 132498115 132498115 C T EP400 Missense_Mutation p.P1231L 0.10 unknown(0) TCGA-WE-A8ZT-06 12 133732358 133732358 C T ZNF10 Missense_Mutation p.P176S 0.40 tolerated(0.16) benign(0.071) TCGA-WE-A8ZT-06 12 22001099 22001099 C T ABCC9 Missense_Mutation p.E951K 0.32 tolerated(0.12) benign(0.067) TCGA-WE-A8ZT-06 12 274981 274981 G A IQSEC3 Missense_Mutation p.E966K 0.47 deleterious(0) possibly_damaging(0.905) TCGA-WE-A8ZT-06 12 39161473 39161473 G A CPNE8 Missense_Mutation p.P180L 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 12 41422939 41422939 C G CNTN1 Missense_Mutation p.I966M 0.44 tolerated(0.42) benign(0.009) TCGA-WE-A8ZT-06 12 41422940 41422940 C T CNTN1 Missense_Mutation p.P967S 0.44 deleterious(0.01) probably_damaging(0.919) TCGA-WE-A8ZT-06 12 42853859 42853859 G A PRICKLE1 Missense_Mutation p.R750W 0.38 deleterious(0) benign(0.394) TCGA-WE-A8ZT-06 12 44913970 44913970 C T NELL2 Missense_Mutation p.E790K 0.41 tolerated(0.62) benign(0.341) TCGA-WE-A8ZT-06 12 4700410 4700410 C T DYRK4 Missense_Mutation p.P22S 0.47 tolerated(0.51) benign(0.004) TCGA-WE-A8ZT-06 12 48376714 48376714 G A COL2A1 Missense_Mutation p.P704S 0.46 possibly_damaging(0.698) TCGA-WE-A8ZT-06 12 48376715 48376715 G A COL2A1 Silent p.F703F 0.48 TCGA-WE-A8ZT-06 12 49391356 49391356 G A DDN Missense_Mutation p.R435C 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WE-A8ZT-06 12 53164827 53164827 C T KRT76 Silent p.V480V 0.36 TCGA-WE-A8ZT-06 12 54901640 54901640 C T NCKAP1L Missense_Mutation p.H104Y 0.39 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZT-06 12 55887015 55887015 C T OR6C68 Missense_Mutation p.S285F 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-WE-A8ZT-06 12 56082046 56082046 C T ITGA7 Silent p.R1003R 0.34 TCGA-WE-A8ZT-06 12 56082047 56082047 C T ITGA7 Missense_Mutation p.R1003Q 0.36 deleterious(0.04) benign(0.034) TCGA-WE-A8ZT-06 12 56572830 56572830 C T SMARCC2 Silent p.K364K 0.40 TCGA-WE-A8ZT-06 12 56845011 56845011 A G MIP 3'UTR 0.54 TCGA-WE-A8ZT-06 12 68551871 68551871 C T IFNG Missense_Mutation p.S63N 0.35 tolerated(0.16) benign(0.271) TCGA-WE-A8ZT-06 12 70188988 70188988 C T RAB3IP Missense_Mutation p.P267L 0.36 deleterious(0.02) probably_damaging(1) TCGA-WE-A8ZT-06 12 7559257 7559257 C T CD163L1 Missense_Mutation p.G320R 0.40 tolerated(0.09) probably_damaging(0.995) TCGA-WE-A8ZT-06 12 80226227 80226227 G A PPP1R12A Missense_Mutation p.L178F 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-WE-A8ZT-06 12 85277545 85277545 G A SLC6A15 Intron 0.42 TCGA-WE-A8ZT-06 12 86198702 86198702 C T RASSF9 Silent p.K362K 0.39 TCGA-WE-A8ZT-06 12 8672909 8672909 G A CLEC4D Missense_Mutation p.D158N 0.40 tolerated(0.1) possibly_damaging(0.463) TCGA-WE-A8ZT-06 12 95927181 95927181 C T USP44 Missense_Mutation p.M284I 0.37 deleterious(0.04) probably_damaging(0.951) TCGA-WE-A8ZT-06 12 96077290 96077290 C T NTN4 Missense_Mutation p.G460R 0.30 deleterious(0) probably_damaging(0.994) TCGA-WE-A8ZT-06 12 9833598 9833598 C T CLEC2D Silent p.I47I 0.25 TCGA-WE-A8ZT-06 12 98927656 98927656 C T TMPO Silent p.L541L 0.36 TCGA-WE-A8ZT-06 13 111138085 111138085 G A COL4A2 Missense_Mutation p.G1037R 0.48 probably_damaging(0.951) TCGA-WE-A8ZT-06 13 20024455 20024455 G A TPTE2 Missense_Mutation p.H278Y 0.41 deleterious(0) possibly_damaging(0.643) TCGA-WE-A8ZT-06 13 25424503 25424503 G A RNF17 Nonsense_Mutation p.W1042* 0.16 TCGA-WE-A8ZT-06 13 27333139 27333139 A G GPR12 Missense_Mutation p.Y276H 0.64 tolerated(0.54) benign(0.003) TCGA-WE-A8ZT-06 13 32376538 32376538 C T RXFP2 Missense_Mutation p.S754F 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-WE-A8ZT-06 13 33347406 33347406 C T PDS5B Missense_Mutation p.P1418S 0.42 tolerated_low_confidence(0.09) benign(0.202) TCGA-WE-A8ZT-06 13 39603431 39603431 C T PROSER1 Missense_Mutation p.E88K 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-WE-A8ZT-06 13 46641464 46641464 C T CPB2 Missense_Mutation p.G227D 0.50 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 13 92345554 92345554 G A GPC5 Missense_Mutation p.D147N 0.35 deleterious(0) probably_damaging(0.986) TCGA-WE-A8ZT-06 14 101489751 101489751 C T MIR411 RNA 0.47 TCGA-WE-A8ZT-06 14 102461105 102461105 C T DYNC1H1 Silent p.V1084V 0.51 TCGA-WE-A8ZT-06 14 19553749 19553749 G A POTEG Silent p.G111G 0.10 TCGA-WE-A8ZT-06 14 20295988 20295988 C T OR4N2 Silent p.C127C 0.26 TCGA-WE-A8ZT-06 14 23397820 23397820 C T PRMT5 Missense_Mutation p.D39N 0.10 deleterious(0) probably_damaging(0.919) TCGA-WE-A8ZT-06 14 24617276 24617276 G A RNF31 Nonsense_Mutation p.W95* 0.36 TCGA-WE-A8ZT-06 14 24727747 24727747 G A TGM1 Missense_Mutation p.S431F 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 14 35739620 35739620 C T KIAA0391 Missense_Mutation p.P480S 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-WE-A8ZT-06 14 53149054 53149054 G A ERO1L Missense_Mutation p.P103S 0.04 tolerated(0.09) probably_damaging(0.997) TCGA-WE-A8ZT-06 14 69256599 69256599 G A ZFP36L1 Missense_Mutation p.P223L 0.48 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 14 69345756 69345756 A G ACTN1 Missense_Mutation p.F771L 0.06 tolerated(0.1) benign(0.418) TCGA-WE-A8ZT-06 14 77327076 77327076 G A C14orf166B Missense_Mutation p.G382E 0.43 tolerated(1) benign(0.058) TCGA-WE-A8ZT-06 14 78397982 78397982 C T ADCK1 Missense_Mutation p.A443V 0.39 tolerated(0.49) benign(0.003) TCGA-WE-A8ZT-06 14 88792763 88792763 C T KCNK10 5'Flank 0.19 TCGA-WE-A8ZT-06 14 95662841 95662841 G T CLMN Missense_Mutation p.P901H 0.10 deleterious(0.01) possibly_damaging(0.838) TCGA-WE-A8ZT-06 14 96783564 96783564 G A ATG2B Missense_Mutation p.S1043F 0.48 deleterious(0.04) benign(0.172) TCGA-WE-A8ZT-06 14 97010558 97010558 T G PAPOLA Silent p.V454V 0.31 TCGA-WE-A8ZT-06 15 101114389 101114389 G A LINS Missense_Mutation p.S230F 0.37 deleterious(0.02) benign(0.103) TCGA-WE-A8ZT-06 15 23890547 23890547 C T MAGEL2 Silent p.E178E 0.45 TCGA-WE-A8ZT-06 15 44876522 44876522 C T SPG11 Missense_Mutation p.E1786K 0.23 tolerated(0.58) probably_damaging(0.953) TCGA-WE-A8ZT-06 15 50279693 50279693 G A ATP8B4 Missense_Mutation p.L215F 0.24 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 15 50279694 50279694 G A ATP8B4 Silent p.I214I 0.23 TCGA-WE-A8ZT-06 15 50279697 50279697 T C ATP8B4 Silent p.G213G 0.27 TCGA-WE-A8ZT-06 15 53907746 53907746 C T WDR72 Missense_Mutation p.R886K 0.35 tolerated(0.63) benign(0.003) TCGA-WE-A8ZT-06 15 56122026 56122026 A C NEDD4 3'UTR 0.50 TCGA-WE-A8ZT-06 15 56436648 56436648 G A RFX7 Missense_Mutation p.L77F 0.37 deleterious(0.02) benign(0.338) TCGA-WE-A8ZT-06 15 71175194 71175194 A C THAP10 Silent p.S161S 0.37 TCGA-WE-A8ZT-06 15 72700177 72700177 G A TMEM202 Silent p.E255E 0.38 TCGA-WE-A8ZT-06 15 74337401 74337401 C T PML 3'UTR 0.40 TCGA-WE-A8ZT-06 16 10631840 10631840 G A EMP2 Silent p.F87F 0.36 TCGA-WE-A8ZT-06 16 113623 113623 G A RHBDF1 Missense_Mutation p.P142S 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-WE-A8ZT-06 16 113624 113624 G A RHBDF1 Silent p.P141P 0.50 TCGA-WE-A8ZT-06 16 11864800 11864800 G C ZC3H7A Missense_Mutation p.S316C 0.42 tolerated(0.07) benign(0.003) TCGA-WE-A8ZT-06 16 12223484 12223484 C A SNX29 Intron 0.33 TCGA-WE-A8ZT-06 16 14339389 14339389 C T MKL2 Missense_Mutation p.L362F 0.31 tolerated(0.2) possibly_damaging(0.647) TCGA-WE-A8ZT-06 16 1536507 1536507 G A PTX4 Silent p.F285F 0.51 TCGA-WE-A8ZT-06 16 15808849 15808849 C T MYH11 Silent p.R1908R 0.39 TCGA-WE-A8ZT-06 16 19455561 19455561 G A TMC5 Missense_Mutation p.G316E 0.40 tolerated(0.28) benign(0.327) TCGA-WE-A8ZT-06 16 20787331 20787331 C T ACSM3 Silent p.V130V 0.34 TCGA-WE-A8ZT-06 16 21151866 21151866 C T DNAH3 Silent p.S229S 0.49 TCGA-WE-A8ZT-06 16 23536440 23536440 G A EARS2 Intron 0.32 TCGA-WE-A8ZT-06 16 23536441 23536441 G A EARS2 Intron 0.32 TCGA-WE-A8ZT-06 16 23700916 23700916 C T PLK1 Silent p.P509P 0.37 TCGA-WE-A8ZT-06 16 2819131 2819145 TCCTCCTCCTCTTCT - SRRM2 In_Frame_Del p.S2644_S2648del 0.45 TCGA-WE-A8ZT-06 16 29996879 29996879 C T TAOK2 Missense_Mutation p.R590C 0.37 tolerated(0.18) probably_damaging(0.986) TCGA-WE-A8ZT-06 16 31072759 31072759 G A ZNF668 Missense_Mutation p.P520L 0.37 tolerated(0.12) benign(0.001) TCGA-WE-A8ZT-06 16 31072760 31072760 G A ZNF668 Missense_Mutation p.P520S 0.38 tolerated(0.35) benign(0.025) TCGA-WE-A8ZT-06 16 58313628 58313628 C T CCDC113 Nonsense_Mutation p.R361* 0.42 TCGA-WE-A8ZT-06 16 61935302 61935302 G A CDH8 Nonsense_Mutation p.Q110* 0.45 TCGA-WE-A8ZT-06 16 66621858 66621858 G A CMTM2 Missense_Mutation p.D195N 0.34 deleterious(0) probably_damaging(0.982) TCGA-WE-A8ZT-06 16 75564154 75564154 G A CHST5 Silent p.L43L 0.50 TCGA-WE-A8ZT-06 16 84094379 84094379 G A MBTPS1 Missense_Mutation p.S871L 0.28 tolerated(0.14) benign(0.002) TCGA-WE-A8ZT-06 16 84212568 84212568 C T TAF1C Silent p.K863K 0.15 TCGA-WE-A8ZT-06 16 85667539 85667539 G A GSE1 Silent p.K9K 0.44 TCGA-WE-A8ZT-06 16 89245871 89245871 C T CDH15 Silent p.T30T 0.46 TCGA-WE-A8ZT-06 16 9984848 9984848 C T GRIN2A Missense_Mutation p.E373K 0.42 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZT-06 17 10302178 10302178 C T MYH8 Silent p.E1296E 0.42 TCGA-WE-A8ZT-06 17 10400707 10400707 C T MYH1 Silent p.K1476K 0.38 TCGA-WE-A8ZT-06 17 11572468 11572468 G A DNAH9 Missense_Mutation p.G940E 0.42 benign(0.005) TCGA-WE-A8ZT-06 17 11645516 11645516 C T DNAH9 Silent p.D1999D 0.37 TCGA-WE-A8ZT-06 17 11726282 11726282 A G DNAH9 Silent p.R3059R 0.54 TCGA-WE-A8ZT-06 17 21319555 21319555 G A KCNJ12 Missense_Mutation p.G301S 0.07 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 17 21319556 21319556 G A KCNJ12 Missense_Mutation p.G301D 0.07 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 17 27829623 27829623 G C TAOK1 Missense_Mutation p.R407T 0.24 tolerated(0.43) benign(0.001) TCGA-WE-A8ZT-06 17 29111249 29111249 C A CRLF3 Nonsense_Mutation p.G429* 0.35 TCGA-WE-A8ZT-06 17 2966623 2966623 G A OR1D5 Silent p.S93S 0.23 TCGA-WE-A8ZT-06 17 39594794 39594794 C T KRT38 Silent p.L323L 0.39 TCGA-WE-A8ZT-06 17 44845841 44845841 G A WNT3 Missense_Mutation p.H305Y 0.35 deleterious(0.02) possibly_damaging(0.722) TCGA-WE-A8ZT-06 17 44845842 44845842 G A WNT3 Silent p.S304S 0.36 TCGA-WE-A8ZT-06 17 4535290 4535290 G A ALOX15 Missense_Mutation p.T568I 0.38 deleterious(0.02) possibly_damaging(0.763) TCGA-WE-A8ZT-06 17 47230205 47230205 C G B4GALNT2 Missense_Mutation p.L193V 0.50 tolerated(1) benign(0.02) TCGA-WE-A8ZT-06 17 48755285 48755285 C T ABCC3 Missense_Mutation p.P1187S 0.38 deleterious(0.01) benign(0.236) TCGA-WE-A8ZT-06 17 48757219 48757219 G A ABCC3 Missense_Mutation p.A1256T 0.41 deleterious(0) possibly_damaging(0.899) TCGA-WE-A8ZT-06 17 57287390 57287390 G A SMG8 5'UTR 0.35 TCGA-WE-A8ZT-06 17 6338425 6338425 G A AIPL1 5'UTR 0.30 TCGA-WE-A8ZT-06 17 6338426 6338426 G A AIPL1 5'UTR 0.28 TCGA-WE-A8ZT-06 17 6599158 6599158 G A SLC13A5 Silent p.F314F 0.31 TCGA-WE-A8ZT-06 17 67121148 67121148 C T ABCA6 Missense_Mutation p.G383D 0.25 tolerated(0.06) benign(0.215) TCGA-WE-A8ZT-06 17 72351374 72351374 C T KIF19 Nonsense_Mutation p.R974* 0.32 TCGA-WE-A8ZT-06 17 76449516 76449516 C A DNAH17 Nonsense_Mutation p.E3466* 0.50 TCGA-WE-A8ZT-06 17 76449517 76449517 C T DNAH17 Silent p.S3465S 0.50 TCGA-WE-A8ZT-06 17 8736255 8736255 C T PIK3R6 Silent p.L251L 0.29 TCGA-WE-A8ZT-06 18 19423089 19423089 C T MIB1 Intron 0.34 TCGA-WE-A8ZT-06 18 21364061 21364061 G A LAMA3 Missense_Mutation p.V515I 0.13 probably_damaging(0.976) TCGA-WE-A8ZT-06 18 25570170 25570170 A G CDH2 Missense_Mutation p.F497L 0.40 deleterious(0) benign(0.1) TCGA-WE-A8ZT-06 18 28711578 28711578 G A DSC1 Silent p.F822F 0.38 TCGA-WE-A8ZT-06 18 29890259 29890259 C T GAREM Missense_Mutation p.R97Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZT-06 18 30092863 30092863 G A WBP11P1 RNA 0.26 TCGA-WE-A8ZT-06 18 42530538 42530538 G A SETBP1 Silent p.L411L 0.39 TCGA-WE-A8ZT-06 18 50278554 50278554 G A DCC Nonsense_Mutation p.W74* 0.44 TCGA-WE-A8ZT-06 18 50985654 50985654 C T DCC Nonsense_Mutation p.R1149* 0.40 TCGA-WE-A8ZT-06 18 52262304 52262304 A G DYNAP Silent p.R90R 0.41 TCGA-WE-A8ZT-06 18 59221753 59221753 C T CDH20 Missense_Mutation p.S744F 0.62 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 18 59483291 59483291 G A RNF152 Missense_Mutation p.P136S 0.34 tolerated(0.42) benign(0.064) TCGA-WE-A8ZT-06 18 59483728 59483728 G A RNF152 5'UTR 0.51 TCGA-WE-A8ZT-06 18 71822588 71822588 C T TIMM21 Missense_Mutation p.P138S 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-WE-A8ZT-06 18 71822589 71822589 C T TIMM21 Missense_Mutation p.P138L 0.34 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZT-06 18 74090828 74090828 G A ZNF516 Missense_Mutation p.P1081S 0.49 tolerated(0.08) probably_damaging(0.996) TCGA-WE-A8ZT-06 18 74963119 74963119 C T GALR1 Silent p.F205F 0.34 TCGA-WE-A8ZT-06 19 12805449 12805449 G A FBXW9 Silent p.L213L 0.36 TCGA-WE-A8ZT-06 19 13875344 13875344 C T MRI1 5'Flank 0.44 TCGA-WE-A8ZT-06 19 13875345 13875345 C T MRI1 5'Flank 0.42 TCGA-WE-A8ZT-06 19 14231447 14231447 G A ASF1B Missense_Mutation p.R145W 0.33 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 19 14512561 14512561 C T CD97 Missense_Mutation p.A391V 0.36 tolerated(0.09) benign(0.022) TCGA-WE-A8ZT-06 19 15053067 15053067 G A OR7C2 Missense_Mutation p.G256E 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WE-A8ZT-06 19 15072964 15072964 G A SLC1A6 Missense_Mutation p.S262F 0.36 tolerated(0.06) probably_damaging(0.995) TCGA-WE-A8ZT-06 19 15838876 15838876 C T OR10H2 Missense_Mutation p.S8F 0.38 tolerated(0.46) benign(0.001) TCGA-WE-A8ZT-06 19 17163638 17163638 C A HAUS8 Missense_Mutation p.R309L 0.41 deleterious(0.02) possibly_damaging(0.543) TCGA-WE-A8ZT-06 19 17337842 17337842 C T OCEL1 Missense_Mutation p.P96S 0.28 tolerated(0.47) benign(0.012) TCGA-WE-A8ZT-06 19 17337843 17337843 C T OCEL1 Missense_Mutation p.P96L 0.28 tolerated(0.51) benign(0.007) TCGA-WE-A8ZT-06 19 17452477 17452477 G A GTPBP3 Missense_Mutation p.D514N 0.20 tolerated(0.05) benign(0.422) TCGA-WE-A8ZT-06 19 18285951 18285951 C T IFI30 Silent p.F78F 0.46 TCGA-WE-A8ZT-06 19 19790976 19790976 C T ZNF101 Missense_Mutation p.P393L 0.37 deleterious(0.01) probably_damaging(0.942) TCGA-WE-A8ZT-06 19 20748533 20748533 G A ZNF737 5'UTR 0.27 TCGA-WE-A8ZT-06 19 36269195 36269195 C T ARHGAP33 Missense_Mutation p.P68L 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-WE-A8ZT-06 19 36353494 36353494 G A KIRREL2 Missense_Mutation p.S537N 0.43 tolerated(0.51) benign(0.001) TCGA-WE-A8ZT-06 19 40580650 40580650 G A ZNF780A Nonsense_Mutation p.R568* 0.37 TCGA-WE-A8ZT-06 19 43244584 43244584 C T PSG3 5'UTR 0.47 TCGA-WE-A8ZT-06 19 44933930 44933930 G A ZNF229 Silent p.A342A 0.38 TCGA-WE-A8ZT-06 19 45540784 45540784 C T RELB Silent p.D492D 0.40 TCGA-WE-A8ZT-06 19 45975856 45975856 C T FOSB Silent p.I201I 0.23 TCGA-WE-A8ZT-06 19 46498711 46498711 G A CCDC61 5'Flank 0.20 TCGA-WE-A8ZT-06 19 50363248 50363248 C T PTOV1 Silent p.G349G 0.29 TCGA-WE-A8ZT-06 19 5082414 5082414 C T KDM4B Missense_Mutation p.P273S 0.56 probably_damaging(0.983) TCGA-WE-A8ZT-06 19 5082415 5082415 C T KDM4B Missense_Mutation p.P273L 0.53 probably_damaging(0.982) TCGA-WE-A8ZT-06 19 52918518 52918518 C T ZNF528 Missense_Mutation p.P138L 0.39 tolerated(0.08) benign(0) TCGA-WE-A8ZT-06 19 53762255 53762255 T C VN1R2 Silent p.I209I 0.33 TCGA-WE-A8ZT-06 19 54310827 54310827 C T NLRP12 Missense_Mutation p.R722Q 0.16 tolerated(0.57) possibly_damaging(0.747) TCGA-WE-A8ZT-06 19 54783921 54783921 G A LILRB2 Missense_Mutation p.P27L 0.45 deleterious(0.04) benign(0.043) TCGA-WE-A8ZT-06 19 55450922 55450922 C T NLRP7 Missense_Mutation p.G422D 0.45 deleterious(0.01) possibly_damaging(0.764) TCGA-WE-A8ZT-06 19 56297047 56297047 G A NLRP11 Missense_Mutation p.P1016S 0.43 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-WE-A8ZT-06 19 57133342 57133342 C T ZNF71 Silent p.L229L 0.44 TCGA-WE-A8ZT-06 19 57640411 57640411 G A USP29 Missense_Mutation p.R123K 0.31 tolerated(0.89) benign(0.031) TCGA-WE-A8ZT-06 19 57746762 57746762 C T AURKC Missense_Mutation p.P303S 0.44 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-WE-A8ZT-06 19 58439364 58439364 G A ZNF418 Missense_Mutation p.S62F 0.47 tolerated(0.07) possibly_damaging(0.831) TCGA-WE-A8ZT-06 19 6732289 6732289 G A GPR108 Silent p.I370I 0.52 TCGA-WE-A8ZT-06 19 8651589 8651589 C T ADAMTS10 Silent p.Q752Q 0.38 TCGA-WE-A8ZT-06 19 8665924 8665924 C T ADAMTS10 Missense_Mutation p.R233Q 0.14 deleterious(0) benign(0.302) TCGA-WE-A8ZT-06 19 8999551 8999551 C T MUC16 Missense_Mutation p.G13542R 0.33 probably_damaging(0.992) TCGA-WE-A8ZT-06 19 9064856 9064856 C T MUC16 Silent p.R7530R 0.35 TCGA-WE-A8ZT-06 1 100154947 100154947 G A PALMD Silent p.G377G 0.37 TCGA-WE-A8ZT-06 1 103471674 103471674 G A COL11A1 Missense_Mutation p.R581C 0.31 unknown(0) TCGA-WE-A8ZT-06 1 10478895 10478895 A T PGD Silent p.G374G 0.32 TCGA-WE-A8ZT-06 1 108728510 108728510 G A SLC25A24 Missense_Mutation p.L84F 0.48 deleterious(0) probably_damaging(0.948) TCGA-WE-A8ZT-06 1 109840098 109840098 G A MYBPHL Missense_Mutation p.R126C 0.52 tolerated(0.2) benign(0.002) TCGA-WE-A8ZT-06 1 111215758 111215758 C T KCNA3 Silent p.T558T 0.32 TCGA-WE-A8ZT-06 1 111964018 111964018 G A OVGP1 Silent p.P261P 0.49 TCGA-WE-A8ZT-06 1 11779737 11779737 C T DRAXIN Missense_Mutation p.S345F 0.42 deleterious(0) probably_damaging(0.991) TCGA-WE-A8ZT-06 1 118413097 118413097 G A GDAP2 3'UTR 0.43 TCGA-WE-A8ZT-06 1 118624248 118624248 C T SPAG17 Missense_Mutation p.E594K 0.30 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZT-06 1 12183421 12183421 G A TNFRSF8 Missense_Mutation p.E343K 0.62 tolerated(0.67) benign(0.004) TCGA-WE-A8ZT-06 1 12336268 12336268 C T VPS13D Missense_Mutation p.L875F 0.43 probably_damaging(0.97) TCGA-WE-A8ZT-06 1 145530927 145530927 G A ITGA10 Missense_Mutation p.G220E 0.50 tolerated(0.19) possibly_damaging(0.643) TCGA-WE-A8ZT-06 1 152277827 152277827 C G FLG Missense_Mutation p.V3179L 0.37 unknown(0) TCGA-WE-A8ZT-06 1 154293686 154293686 C T AQP10 Missense_Mutation p.L19F 0.35 tolerated(0.06) possibly_damaging(0.611) TCGA-WE-A8ZT-06 1 157514175 157514175 G A FCRL5 Missense_Mutation p.L241F 0.38 tolerated(0.7) benign(0.266) TCGA-WE-A8ZT-06 1 15767060 15767060 C T CTRC Silent p.F68F 0.47 TCGA-WE-A8ZT-06 1 158435494 158435494 C T OR10K1 Missense_Mutation p.T48I 0.38 tolerated(0.91) probably_damaging(0.999) TCGA-WE-A8ZT-06 1 158435495 158435495 C T OR10K1 Silent p.T48T 0.38 TCGA-WE-A8ZT-06 1 166959016 166959016 C T MAEL Nonsense_Mutation p.R59* 0.47 TCGA-WE-A8ZT-06 1 169096482 169096482 G A ATP1B1 Missense_Mutation p.E135K 0.31 tolerated(0.07) benign(0.002) TCGA-WE-A8ZT-06 1 16918491 16918491 G A NBPF1 Missense_Mutation p.S9F 0.11 deleterious(0) possibly_damaging(0.683) TCGA-WE-A8ZT-06 1 170699427 170699427 C T PRRX1 Intron 0.37 TCGA-WE-A8ZT-06 1 170955805 170955805 C T MROH9 Missense_Mutation p.S278F 0.32 deleterious(0.01) possibly_damaging(0.8) TCGA-WE-A8ZT-06 1 171174699 171174699 G C FMO2 Missense_Mutation p.G370A 0.41 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 1 17664578 17664578 G A PADI4 Missense_Mutation p.V152M 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-WE-A8ZT-06 1 181686301 181686301 G A CACNA1E Missense_Mutation p.R463K 0.33 tolerated(0.74) benign(0.067) TCGA-WE-A8ZT-06 1 190250828 190250828 G A BRINP3 Missense_Mutation p.L97F 0.33 tolerated(0.99) benign(0.025) TCGA-WE-A8ZT-06 1 201009781 201009781 G C CACNA1S Missense_Mutation p.P1732R 0.39 tolerated_low_confidence(0.05) benign(0.002) TCGA-WE-A8ZT-06 1 202121684 202121684 G A PTPN7 Silent p.I392I 0.34 TCGA-WE-A8ZT-06 1 214830620 214830620 G A CENPF Missense_Mutation p.G2944R 0.35 possibly_damaging(0.66) TCGA-WE-A8ZT-06 1 215953356 215953356 G A USH2A Missense_Mutation p.P3590S 0.41 probably_damaging(0.989) TCGA-WE-A8ZT-06 1 216246602 216246602 A C USH2A Silent p.G1871G 0.21 TCGA-WE-A8ZT-06 1 228210431 228210431 C T WNT3A Silent p.I45I 0.52 TCGA-WE-A8ZT-06 1 229738439 229738439 G A TAF5L Silent p.L159L 0.42 TCGA-WE-A8ZT-06 1 231362491 231362491 C T C1orf131 Silent p.K229K 0.29 TCGA-WE-A8ZT-06 1 237754029 237754029 C T RYR2 Silent p.I1299I 0.36 TCGA-WE-A8ZT-06 1 240978049 240978049 C A RGS7 Missense_Mutation p.R271I 0.32 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZT-06 1 245020054 245020054 C T HNRNPU Silent p.K573K 0.37 TCGA-WE-A8ZT-06 1 247025347 247025347 G A AHCTF1 Missense_Mutation p.P1226S 0.30 tolerated(0.34) benign(0.005) TCGA-WE-A8ZT-06 1 247264126 247264126 G A ZNF669 Silent p.F315F 0.39 TCGA-WE-A8ZT-06 1 247588907 247588907 G A NLRP3 Intron 0.29 TCGA-WE-A8ZT-06 1 247835881 247835881 C T OR13G1 Missense_Mutation p.V155M 0.46 deleterious(0.05) probably_damaging(0.973) TCGA-WE-A8ZT-06 1 248224608 248224608 C T OR2L3 Missense_Mutation p.P209S 0.13 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 1 248652040 248652040 C A OR2T5 Missense_Mutation p.L51I 0.30 tolerated(0.17) benign(0.033) TCGA-WE-A8ZT-06 1 248737386 248737386 G A OR2T34 Missense_Mutation p.L225F 0.29 tolerated(0.72) benign(0.019) TCGA-WE-A8ZT-06 1 33487215 33487215 C A AK2 Silent p.R103R 0.45 TCGA-WE-A8ZT-06 1 35260351 35260351 G A GJA4 Nonsense_Mutation p.W179* 0.42 TCGA-WE-A8ZT-06 1 36212546 36212546 G A CLSPN Missense_Mutation p.P892L 0.39 tolerated(0.07) benign(0.088) TCGA-WE-A8ZT-06 1 37324773 37324773 G A GRIK3 Missense_Mutation p.S347F 0.40 deleterious(0.02) probably_damaging(0.96) TCGA-WE-A8ZT-06 1 37967592 37967592 G A MEAF6 Missense_Mutation p.P116S 0.46 tolerated(0.17) probably_damaging(0.994) TCGA-WE-A8ZT-06 1 41094537 41094537 G A RIMS3 Missense_Mutation p.P220L 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8ZT-06 1 43898853 43898853 A T SZT2 Silent p.A1875A 0.39 TCGA-WE-A8ZT-06 1 43908000 43908000 C T SZT2 Silent p.P2588P 0.29 TCGA-WE-A8ZT-06 1 43916657 43916657 C G SZT2 3'UTR 0.14 TCGA-WE-A8ZT-06 1 43916659 43916659 C T SZT2 3'UTR 0.14 TCGA-WE-A8ZT-06 1 47607247 47607247 G A CYP4A22 Silent p.P114P 0.34 TCGA-WE-A8ZT-06 1 50666528 50666528 C T ELAVL4 Missense_Mutation p.S277F 0.39 deleterious(0.01) benign(0.144) TCGA-WE-A8ZT-06 1 53676348 53676348 C T CPT2 Silent p.D334D 0.22 TCGA-WE-A8ZT-06 1 55062964 55062964 C T ACOT11 Missense_Mutation p.P214S 0.35 tolerated(0.67) benign(0.005) TCGA-WE-A8ZT-06 1 55223605 55223605 C T PARS2 Silent p.L410L 0.36 TCGA-WE-A8ZT-06 1 57209872 57209872 G A C1orf168 Silent p.S485S 0.32 TCGA-WE-A8ZT-06 1 5934984 5934984 G A NPHP4 Silent p.P998P 0.34 TCGA-WE-A8ZT-06 1 94362322 94362322 G A GCLM Missense_Mutation p.P131L 0.53 deleterious(0.01) possibly_damaging(0.877) TCGA-WE-A8ZT-06 1 94362323 94362323 G A GCLM Missense_Mutation p.P131S 0.53 deleterious(0.03) benign(0.328) TCGA-WE-A8ZT-06 20 20055837 20055837 G C C20orf26 Missense_Mutation p.V126L 0.31 deleterious(0.03) possibly_damaging(0.72) TCGA-WE-A8ZT-06 20 20257968 20257968 G A C20orf26 Missense_Mutation p.D888N 0.44 tolerated(0.26) benign(0.004) TCGA-WE-A8ZT-06 20 20493763 20493763 G A RALGAPA2 Missense_Mutation p.S1417F 0.36 deleterious(0) possibly_damaging(0.873) TCGA-WE-A8ZT-06 20 2321222 2321222 G A TGM3 Missense_Mutation p.E693K 0.39 tolerated_low_confidence(0.2) benign(0.037) TCGA-WE-A8ZT-06 20 25442236 25442236 T C NINL Silent p.E1206E 0.43 TCGA-WE-A8ZT-06 20 29631553 29631553 G A FRG1B Missense_Mutation p.E117K 0.35 tolerated(0.27) benign(0.024) TCGA-WE-A8ZT-06 20 31571697 31571697 T A SUN5 Missense_Mutation p.N348I 0.10 deleterious(0) probably_damaging(0.951) TCGA-WE-A8ZT-06 20 31879746 31879746 G A BPIFB1 Silent p.Q183Q 0.35 TCGA-WE-A8ZT-06 20 3215472 3215472 C T SLC4A11 Missense_Mutation p.D96N 0.35 tolerated(0.19) benign(0.231) TCGA-WE-A8ZT-06 20 34810242 34810242 G A EPB41L1 Missense_Mutation p.D855N 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 20 40050313 40050313 G A CHD6 Silent p.S1654S 0.38 TCGA-WE-A8ZT-06 20 42788290 42788290 G A JPH2 Silent p.I379I 0.41 TCGA-WE-A8ZT-06 20 44174535 44174535 C T EPPIN Intron 0.48 TCGA-WE-A8ZT-06 20 47570179 47570179 C T ARFGEF2 Silent p.F230F 0.49 TCGA-WE-A8ZT-06 20 47707375 47707375 C T CSE1L Missense_Mutation p.P760S 0.50 tolerated(0.7) benign(0.01) TCGA-WE-A8ZT-06 20 54573733 54573733 C T CBLN4 Silent p.T162T 0.38 TCGA-WE-A8ZT-06 20 54824448 54824448 G A MC3R Silent p.S183S 0.41 TCGA-WE-A8ZT-06 20 54824449 54824449 G C MC3R Missense_Mutation p.E184Q 0.40 tolerated(0.06) probably_damaging(0.925) TCGA-WE-A8ZT-06 20 55099920 55099920 C T FAM209A Missense_Mutation p.A19V 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-WE-A8ZT-06 20 5935309 5935309 C T MCM8 Silent p.F103F 0.26 TCGA-WE-A8ZT-06 20 744543 744543 G A SLC52A3 Silent p.F224F 0.57 TCGA-WE-A8ZT-06 20 9438063 9438063 G A PLCB4 Missense_Mutation p.G988E 0.42 tolerated(0.74) benign(0.004) TCGA-WE-A8ZT-06 21 11029686 11029686 G A BAGE2 RNA 0.12 TCGA-WE-A8ZT-06 21 15561493 15561493 C T LIPI Silent p.R119R 0.40 TCGA-WE-A8ZT-06 21 32513676 32513676 C T TIAM1 Missense_Mutation p.D1208N 0.39 deleterious(0) benign(0.219) TCGA-WE-A8ZT-06 21 32595802 32595802 G T TIAM1 Missense_Mutation p.L639I 0.36 deleterious(0) benign(0.27) TCGA-WE-A8ZT-06 22 18347473 18347473 C T MICAL3 Intron 0.38 TCGA-WE-A8ZT-06 22 18609503 18609503 C T TUBA8 Missense_Mutation p.T253I 0.33 tolerated_low_confidence(0.1) benign(0.034) TCGA-WE-A8ZT-06 22 23615312 23615312 G C BCR Missense_Mutation p.V656L 0.59 deleterious(0) possibly_damaging(0.739) TCGA-WE-A8ZT-06 22 30951343 30951343 G A GAL3ST1 Missense_Mutation p.S290L 0.30 deleterious(0.04) benign(0.289) TCGA-WE-A8ZT-06 22 32480606 32480606 G A SLC5A1 Missense_Mutation p.G282E 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 22 37334206 37334206 C T CSF2RB Missense_Mutation p.P786S 0.41 tolerated(0.16) benign(0.232) TCGA-WE-A8ZT-06 22 37524423 37524423 G A IL2RB Missense_Mutation p.P457S 0.13 tolerated(0.5) benign(0.028) TCGA-WE-A8ZT-06 22 39928516 39928516 G A RPS19BP1 Missense_Mutation p.P22L 0.38 tolerated(0.18) benign(0.083) TCGA-WE-A8ZT-06 22 41537185 41537185 C T EP300 Missense_Mutation p.P671L 0.37 unknown(0) TCGA-WE-A8ZT-06 2 111395487 111395487 G A BUB1 3'UTR 0.39 TCGA-WE-A8ZT-06 2 112620068 112620068 G A ANAPC1 Missense_Mutation p.P387L 0.26 tolerated(0.19) benign(0.178) TCGA-WE-A8ZT-06 2 113832304 113832304 G A IL1F10 Silent p.K41K 0.33 TCGA-WE-A8ZT-06 2 119739750 119739750 G A MARCO Missense_Mutation p.G307D 0.46 deleterious(0) unknown(0) TCGA-WE-A8ZT-06 2 119752182 119752182 G A MARCO 3'UTR 0.50 TCGA-WE-A8ZT-06 2 128393836 128393836 G A MYO7B Silent p.K1994K 0.39 TCGA-WE-A8ZT-06 2 128393837 128393837 G A MYO7B Missense_Mutation p.V1995M 0.39 deleterious(0.01) possibly_damaging(0.447) TCGA-WE-A8ZT-06 2 140990850 140990850 C A LRP1B Missense_Mutation p.G4569W 0.37 probably_damaging(0.965) TCGA-WE-A8ZT-06 2 141245249 141245249 G A LRP1B Silent p.I3060I 0.42 TCGA-WE-A8ZT-06 2 155711393 155711393 G A KCNJ3 Silent p.V358V 0.38 TCGA-WE-A8ZT-06 2 166019183 166019183 C T SCN3A Missense_Mutation p.D284N 0.39 tolerated(1) benign(0.001) TCGA-WE-A8ZT-06 2 166245817 166245817 C T SCN2A Missense_Mutation p.P1834L 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 2 166898916 166898916 C T SCN1A Missense_Mutation p.E688K 0.44 tolerated(0.07) benign(0.145) TCGA-WE-A8ZT-06 2 167288845 167288845 C T SCN7A Missense_Mutation p.D859N 0.33 tolerated(0.27) benign(0.01) TCGA-WE-A8ZT-06 2 179470198 179470198 C T TTN Missense_Mutation p.E17942K 0.35 TCGA-WE-A8ZT-06 2 179605310 179605310 G A TTN Missense_Mutation p.S4217L 0.30 TCGA-WE-A8ZT-06 2 179613178 179613178 G A TTN Intron 0.44 TCGA-WE-A8ZT-06 2 179642730 179642730 C T TTN Intron 0.39 TCGA-WE-A8ZT-06 2 200213557 200213557 C T SATB2 Missense_Mutation p.R347K 0.40 deleterious(0.04) possibly_damaging(0.776) TCGA-WE-A8ZT-06 2 201470272 201470272 A T AOX1 Missense_Mutation p.K276N 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-WE-A8ZT-06 2 207825643 207825643 G A CPO Missense_Mutation p.R184Q 0.35 tolerated(0.07) possibly_damaging(0.723) TCGA-WE-A8ZT-06 2 21245755 21245755 G A APOB Silent p.L922L 0.41 TCGA-WE-A8ZT-06 2 215301374 215301374 C T VWC2L Missense_Mutation p.R138C 0.33 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZT-06 2 228882311 228882311 G A SPHKAP Missense_Mutation p.P1087S 0.45 deleterious(0) probably_damaging(0.931) TCGA-WE-A8ZT-06 2 228883147 228883147 G A SPHKAP Missense_Mutation p.P808L 0.37 tolerated(0.09) benign(0.178) TCGA-WE-A8ZT-06 2 230223196 230223196 C T DNER 3'UTR 0.47 TCGA-WE-A8ZT-06 2 239353032 239353032 C G ASB1 Missense_Mutation p.P182A 0.14 tolerated(0.44) benign(0.021) TCGA-WE-A8ZT-06 2 239353042 239353042 C G ASB1 Missense_Mutation p.S185C 0.14 tolerated(0.08) possibly_damaging(0.612) TCGA-WE-A8ZT-06 2 242815339 242815339 C T CXXC11 Silent p.F544F 0.40 TCGA-WE-A8ZT-06 2 27529084 27529084 C T TRIM54 Silent p.V332V 0.33 TCGA-WE-A8ZT-06 2 31135107 31135107 C T GALNT14 Silent p.K499K 0.34 TCGA-WE-A8ZT-06 2 38298402 38298402 C T CYP1B1 Silent p.G365G 0.40 TCGA-WE-A8ZT-06 2 60689436 60689436 C T BCL11A Missense_Mutation p.G204E 0.45 deleterious(0.01) possibly_damaging(0.53) TCGA-WE-A8ZT-06 2 60689437 60689437 C T BCL11A Missense_Mutation p.G204R 0.44 deleterious(0) possibly_damaging(0.791) TCGA-WE-A8ZT-06 2 61298860 61298860 C T KIAA1841 Silent p.S90S 0.42 TCGA-WE-A8ZT-06 2 68620305 68620305 G A PLEK Silent p.R258R 0.39 TCGA-WE-A8ZT-06 2 70454947 70454947 G A TIA1 Silent p.F106F 0.39 TCGA-WE-A8ZT-06 2 71061092 71061092 G A CD207 Missense_Mutation p.R84C 0.28 tolerated(0.07) possibly_damaging(0.891) TCGA-WE-A8ZT-06 2 74274904 74274904 C T TET3 Silent p.L485L 0.40 TCGA-WE-A8ZT-06 2 87017647 87017647 G A CD8A Silent p.F69F 0.26 TCGA-WE-A8ZT-06 2 88367394 88367394 G A SMYD1 Missense_Mutation p.G4E 0.36 tolerated_low_confidence(0.31) benign(0.006) TCGA-WE-A8ZT-06 3 101044894 101044894 G A SENP7 Missense_Mutation p.H1016Y 0.34 deleterious(0) probably_damaging(0.952) TCGA-WE-A8ZT-06 3 10106067 10106067 G A FANCD2 Missense_Mutation p.D659N 0.14 tolerated(0.05) benign(0.114) TCGA-WE-A8ZT-06 3 10219694 10219694 C T IRAK2 Silent p.I89I 0.33 TCGA-WE-A8ZT-06 3 107881499 107881499 G A IFT57 Missense_Mutation p.P372L 0.49 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 3 108677817 108677817 T A MORC1 Missense_Mutation p.N984Y 0.35 deleterious_low_confidence(0) benign(0.272) TCGA-WE-A8ZT-06 3 124567326 124567326 G A ITGB5 Silent p.S147S 0.38 TCGA-WE-A8ZT-06 3 124732714 124732714 G A HEG1 Missense_Mutation p.S570F 0.44 deleterious(0) probably_damaging(0.985) TCGA-WE-A8ZT-06 3 130284246 130284246 G A COL6A6 Missense_Mutation p.R357Q 0.42 tolerated(0.25) probably_damaging(0.999) TCGA-WE-A8ZT-06 3 134322775 134322775 T C KY Silent p.E544E 0.44 TCGA-WE-A8ZT-06 3 136573562 136573562 T C SLC35G2 Missense_Mutation p.I87T 0.40 tolerated(0.61) benign(0) TCGA-WE-A8ZT-06 3 138374293 138374293 C T PIK3CB Missense_Mutation p.E1051K 0.44 deleterious(0.03) possibly_damaging(0.883) TCGA-WE-A8ZT-06 3 14952406 14952406 G A FGD5 Silent p.G1125G 0.54 TCGA-WE-A8ZT-06 3 154856014 154856014 G C MME Missense_Mutation p.E282Q 0.42 tolerated(0.49) possibly_damaging(0.863) TCGA-WE-A8ZT-06 3 155838626 155838626 G A KCNAB1 Missense_Mutation p.D76N 0.34 tolerated_low_confidence(0.86) benign(0) TCGA-WE-A8ZT-06 3 169540453 169540453 C T LRRIQ4 Silent p.S248S 0.43 TCGA-WE-A8ZT-06 3 179576917 179576917 C T PEX5L Missense_Mutation p.G252E 0.39 deleterious(0.03) probably_damaging(0.986) TCGA-WE-A8ZT-06 3 189711999 189711999 G A LEPREL1 Missense_Mutation p.A236V 0.13 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZT-06 3 195622270 195622270 G A TNK2 Silent p.P6P 0.50 TCGA-WE-A8ZT-06 3 21606128 21606128 G A ZNF385D Missense_Mutation p.L72F 0.49 tolerated(0.71) benign(0.063) TCGA-WE-A8ZT-06 3 39180226 39180226 C T TTC21A Missense_Mutation p.P1304S 0.51 deleterious(0.03) probably_damaging(1) TCGA-WE-A8ZT-06 3 44409042 44409042 C T TCAIM Silent p.I138I 0.44 TCGA-WE-A8ZT-06 3 46718361 46718361 G A ALS2CL Nonsense_Mutation p.Q637* 0.39 TCGA-WE-A8ZT-06 3 48719045 48719045 G A NCKIPSD Missense_Mutation p.S256F 0.24 tolerated(0.07) probably_damaging(0.993) TCGA-WE-A8ZT-06 3 50325921 50325921 G A IFRD2 Silent p.L453L 0.35 TCGA-WE-A8ZT-06 3 50330058 50330058 C T IFRD2 5'Flank 0.51 TCGA-WE-A8ZT-06 3 52255451 52255451 C T TLR9 Missense_Mutation p.D1115N 0.34 tolerated(0.05) possibly_damaging(0.864) TCGA-WE-A8ZT-06 3 52842721 52842721 G A ITIH3 3'UTR 0.44 TCGA-WE-A8ZT-06 3 58108904 58108904 G A FLNB Missense_Mutation p.G1071R 0.32 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 3 58190555 58190555 C T DNASE1L3 Missense_Mutation p.G125E 0.36 tolerated(0.07) possibly_damaging(0.651) TCGA-WE-A8ZT-06 3 65372837 65372837 C T MAGI1 Intron 0.50 TCGA-WE-A8ZT-06 3 71733709 71733709 G A EIF4E3 3'UTR 0.48 TCGA-WE-A8ZT-06 3 71733710 71733710 G A EIF4E3 3'UTR 0.43 TCGA-WE-A8ZT-06 3 77147348 77147348 G A ROBO2 Missense_Mutation p.R98K 0.32 deleterious(0) unknown(0) TCGA-WE-A8ZT-06 4 100131343 100131343 C T ADH6 Missense_Mutation p.E155K 0.44 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 4 100266404 100266404 G A ADH1C Silent p.L93L 0.38 TCGA-WE-A8ZT-06 4 100512932 100512932 G A MTTP Missense_Mutation p.G248E 0.32 deleterious(0.03) possibly_damaging(0.493) TCGA-WE-A8ZT-06 4 121957538 121957538 C T NDNF Missense_Mutation p.E530K 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-WE-A8ZT-06 4 129042981 129042981 G T LARP1B Nonsense_Mutation p.E388* 0.23 TCGA-WE-A8ZT-06 4 148461548 148461548 T C EDNRA Missense_Mutation p.Y352H 0.44 tolerated(0.06) benign(0.376) TCGA-WE-A8ZT-06 4 162954807 162954807 C T FSTL5 Missense_Mutation p.E44K 0.48 tolerated_low_confidence(0.48) probably_damaging(0.952) TCGA-WE-A8ZT-06 4 167658745 167658745 G A SPOCK3 Silent p.I338I 0.37 TCGA-WE-A8ZT-06 4 187509843 187509843 G A FAT1 Missense_Mutation p.S4557F 0.31 probably_damaging(0.998) TCGA-WE-A8ZT-06 4 3318020 3318020 C A RGS12 Silent p.P41P 0.06 TCGA-WE-A8ZT-06 4 39436312 39436312 G A KLB Missense_Mutation p.M436I 0.31 deleterious(0.01) possibly_damaging(0.85) TCGA-WE-A8ZT-06 4 40440605 40440605 G A RBM47 Silent p.L102L 0.37 TCGA-WE-A8ZT-06 4 4301738 4301738 C G ZBTB49 Silent p.G22G 0.38 TCGA-WE-A8ZT-06 4 4301739 4301739 C T ZBTB49 Silent p.L23L 0.38 TCGA-WE-A8ZT-06 4 52943067 52943067 C T SPATA18 Missense_Mutation p.S294F 0.28 deleterious(0) benign(0.144) TCGA-WE-A8ZT-06 4 69342025 69342025 C T TMPRSS11E Silent p.I192I 0.46 TCGA-WE-A8ZT-06 4 69696422 69696422 G A UGT2B10 Missense_Mutation p.G471E 0.41 deleterious(0) possibly_damaging(0.905) TCGA-WE-A8ZT-06 4 75314854 75314854 G A AREG Missense_Mutation p.G134E 0.43 deleterious(0.03) probably_damaging(0.971) TCGA-WE-A8ZT-06 4 90874480 90874480 G A MMRN1 Missense_Mutation p.E1200K 0.42 deleterious(0.03) probably_damaging(1) TCGA-WE-A8ZT-06 4 94128579 94128579 T G GRID2 Missense_Mutation p.F254V 0.43 tolerated(0.46) possibly_damaging(0.565) TCGA-WE-A8ZT-06 4 9784595 9784595 C T DRD5 Silent p.I314I 0.18 TCGA-WE-A8ZT-06 5 100147705 100147705 C T ST8SIA4 Missense_Mutation p.G309E 0.44 possibly_damaging(0.575) TCGA-WE-A8ZT-06 5 11023066 11023066 G A CTNND2 Silent p.V938V 0.37 TCGA-WE-A8ZT-06 5 115298830 115298830 C T AQPEP Silent p.G172G 0.31 TCGA-WE-A8ZT-06 5 121787130 121787130 C T SNCAIP Missense_Mutation p.A863V 0.33 deleterious(0) benign(0.04) TCGA-WE-A8ZT-06 5 134343808 134343808 C T CATSPER3 Silent p.F218F 0.44 TCGA-WE-A8ZT-06 5 13735301 13735301 G A DNAH5 Silent p.T3900T 0.37 TCGA-WE-A8ZT-06 5 137853259 137853259 G A ETF1 Silent p.F131F 0.34 TCGA-WE-A8ZT-06 5 140168255 140168255 G A PCDHA1 Missense_Mutation p.D794N 0.30 tolerated_low_confidence(0.31) benign(0.003) TCGA-WE-A8ZT-06 5 140187447 140187447 C T PCDHA4 Silent p.T225T 0.41 TCGA-WE-A8ZT-06 5 140229005 140229005 G A PCDHA9 Missense_Mutation p.D309N 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-A8ZT-06 5 140516390 140516390 C T PCDHB5 Silent p.F458F 0.34 TCGA-WE-A8ZT-06 5 140530818 140530818 G A PCDHB6 Missense_Mutation p.G327E 0.45 deleterious(0.03) benign(0.193) TCGA-WE-A8ZT-06 5 140589856 140589856 C T PCDHB12 Silent p.F459F 0.34 TCGA-WE-A8ZT-06 5 140594205 140594205 C T PCDHB13 Silent p.N170N 0.38 TCGA-WE-A8ZT-06 5 140595308 140595308 C T PCDHB13 Missense_Mutation p.S538F 0.33 deleterious_low_confidence(0.03) benign(0.142) TCGA-WE-A8ZT-06 5 140735731 140735731 C T PCDHGA4 Missense_Mutation p.H322Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-WE-A8ZT-06 5 140737028 140737028 C T PCDHGA4 Missense_Mutation p.S754F 0.47 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-WE-A8ZT-06 5 140773354 140773354 G A PCDHGA8 Missense_Mutation p.G325E 0.35 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-WE-A8ZT-06 5 140783500 140783500 G A PCDHGA9 Silent p.L327L 0.45 TCGA-WE-A8ZT-06 5 140909237 140909237 G A DIAPH1 Missense_Mutation p.P870L 0.40 possibly_damaging(0.639) TCGA-WE-A8ZT-06 5 140909238 140909238 G A DIAPH1 Missense_Mutation p.P870S 0.40 benign(0.225) TCGA-WE-A8ZT-06 5 141242843 141242843 G A PCDH1 Missense_Mutation p.S1018F 0.33 deleterious(0) possibly_damaging(0.897) TCGA-WE-A8ZT-06 5 146763495 146763495 G A STK32A Silent p.L380L 0.48 TCGA-WE-A8ZT-06 5 147040843 147040843 C T JAKMIP2 Missense_Mutation p.E99K 0.43 deleterious(0.02) probably_damaging(0.969) TCGA-WE-A8ZT-06 5 156514030 156514030 G A HAVCR2 3'UTR 0.38 TCGA-WE-A8ZT-06 5 161117247 161117247 G A GABRA6 Silent p.R238R 0.38 TCGA-WE-A8ZT-06 5 169533137 169533137 C T FOXI1 Missense_Mutation p.P59L 0.50 deleterious(0.01) possibly_damaging(0.743) TCGA-WE-A8ZT-06 5 174869275 174869275 C T DRD1 Silent p.V276V 0.31 TCGA-WE-A8ZT-06 5 178139460 178139460 T G ZNF354A Missense_Mutation p.K473N 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 5 178310872 178310872 A C ZNF354B Missense_Mutation p.K473N 0.06 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 5 178608097 178608097 C T ADAMTS2 Silent p.R317R 0.32 TCGA-WE-A8ZT-06 5 24488123 24488123 G A CDH10 Silent p.I672I 0.38 TCGA-WE-A8ZT-06 5 26988251 26988251 C T CDH9 Missense_Mutation p.E64K 0.36 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 5 42699938 42699938 C T GHR Missense_Mutation p.P151L 0.30 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 5 56546868 56546868 C T GPBP1 Nonsense_Mutation p.Q361* 0.36 TCGA-WE-A8ZT-06 5 80550914 80550914 G A CKMT2 Missense_Mutation p.E184K 0.57 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZT-06 5 80550916 80550916 G A CKMT2 Silent p.E184E 0.57 TCGA-WE-A8ZT-06 5 83259164 83259164 G A EDIL3 Missense_Mutation p.P385S 0.16 tolerated(0.39) probably_damaging(0.939) TCGA-WE-A8ZT-06 5 90025576 90025576 G A GPR98 Missense_Mutation p.G3515E 0.48 probably_damaging(0.972) TCGA-WE-A8ZT-06 6 107954981 107954981 C G SOBP Silent p.A311A 0.33 TCGA-WE-A8ZT-06 6 109774946 109774946 G A MICAL1 Missense_Mutation p.R121C 0.19 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 6 111543299 111543299 C T SLC16A10 Missense_Mutation p.P470L 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 6 117127864 117127864 G A GPRC6A Missense_Mutation p.S335F 0.45 deleterious(0) probably_damaging(0.934) TCGA-WE-A8ZT-06 6 126206422 126206422 G A NCOA7 Missense_Mutation p.E273K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZT-06 6 128135073 128135073 C T THEMIS Missense_Mutation p.R238Q 0.40 tolerated(0.2) benign(0.024) TCGA-WE-A8ZT-06 6 135515671 135515671 C T MYB Intron 0.42 TCGA-WE-A8ZT-06 6 149918709 149918709 G A KATNA1 Missense_Mutation p.P362S 0.39 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 6 160234645 160234645 C T PNLDC1 Missense_Mutation p.P307S 0.24 tolerated(0.08) possibly_damaging(0.555) TCGA-WE-A8ZT-06 6 160234646 160234646 C T PNLDC1 Missense_Mutation p.P307L 0.24 tolerated(0.21) benign(0.384) TCGA-WE-A8ZT-06 6 160454137 160454137 C T IGF2R Silent p.L403L 0.43 TCGA-WE-A8ZT-06 6 25701467 25701467 C T SCGN Silent p.F245F 0.43 TCGA-WE-A8ZT-06 6 25862614 25862614 G A SLC17A3 Silent p.F50F 0.51 TCGA-WE-A8ZT-06 6 29231741 29231741 C T XXbac-BPG308J9.3 RNA 0.38 TCGA-WE-A8ZT-06 6 30867752 30867752 C T DDR1 3'UTR 0.39 TCGA-WE-A8ZT-06 6 30867753 30867753 C T DDR1 3'UTR 0.40 TCGA-WE-A8ZT-06 6 31674686 31674686 G A LY6G6F Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.17) benign(0.019) TCGA-WE-A8ZT-06 6 31674687 31674687 G A LY6G6F Missense_Mutation p.A2T 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-WE-A8ZT-06 6 32261038 32261038 G A C6orf10 Missense_Mutation p.S471F 0.36 tolerated(0.07) probably_damaging(0.991) TCGA-WE-A8ZT-06 6 4125417 4125417 A G C6orf201 Intron 0.21 TCGA-WE-A8ZT-06 6 43540270 43540270 C T XPO5 Silent p.K91K 0.37 TCGA-WE-A8ZT-06 6 49825111 49825111 C T CRISP1 Translation_Start_Site p.M1? 0.43 tolerated(0.13) benign(0.021) TCGA-WE-A8ZT-06 6 54735477 54735477 G A FAM83B Missense_Mutation p.E145K 0.42 deleterious(0.02) benign(0.41) TCGA-WE-A8ZT-06 6 55378779 55378779 G A HMGCLL1 Intron 0.37 TCGA-WE-A8ZT-06 6 6225059 6225059 C T F13A1 Missense_Mutation p.G278E 0.17 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 6 69653841 69653841 G C BAI3 Missense_Mutation p.G384R 0.35 deleterious(0.05) probably_damaging(1) TCGA-WE-A8ZT-06 6 72006380 72006380 C A OGFRL1 Missense_Mutation p.F184L 0.47 deleterious(0) probably_damaging(0.928) TCGA-WE-A8ZT-06 6 74497050 74497050 C T CD109 Missense_Mutation p.P811S 0.22 tolerated(0.05) benign(0.036) TCGA-WE-A8ZT-06 6 84290202 84290202 C T SNAP91 Missense_Mutation p.D756N 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-WE-A8ZT-06 6 84417663 84417663 T C SNAP91 5'UTR 0.33 TCGA-WE-A8ZT-06 7 100383670 100383670 G A ZAN Missense_Mutation p.G2295R 0.42 unknown(0) TCGA-WE-A8ZT-06 7 100487984 100487984 G A ACHE 3'UTR 0.56 TCGA-WE-A8ZT-06 7 113517816 113517816 C T PPP1R3A Missense_Mutation p.E1111K 0.44 tolerated(0.07) benign(0.388) TCGA-WE-A8ZT-06 7 113518648 113518648 G C PPP1R3A Missense_Mutation p.D833E 0.31 tolerated(0.06) probably_damaging(0.968) TCGA-WE-A8ZT-06 7 117431487 117431487 G A CTTNBP2 Missense_Mutation p.P588L 0.29 tolerated_low_confidence(0.13) benign(0.144) TCGA-WE-A8ZT-06 7 119915700 119915700 C T KCND2 Silent p.F338F 0.41 TCGA-WE-A8ZT-06 7 120884374 120884374 G A CPED1 Silent p.Q764Q 0.41 TCGA-WE-A8ZT-06 7 131872286 131872286 C T PLXNA4 Silent p.L979L 0.43 TCGA-WE-A8ZT-06 7 134943218 134943218 G C STRA8 Missense_Mutation p.E323Q 0.44 deleterious(0) probably_damaging(0.994) TCGA-WE-A8ZT-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-WE-A8ZT-06 7 141896570 141896570 G A RP11-1220K2.2 Missense_Mutation p.G1529E 0.19 probably_damaging(1) TCGA-WE-A8ZT-06 7 141896571 141896571 G A RP11-1220K2.2 Silent p.G1529G 0.19 TCGA-WE-A8ZT-06 7 141952311 141952311 C T PRSS58 Missense_Mutation p.G186E 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 7 142032249 142032249 C T TRBV7-1 Silent p.V23V 0.39 TCGA-WE-A8ZT-06 7 142180580 142180580 G A TRBV6-5 Silent p.F93F 0.31 TCGA-WE-A8ZT-06 7 150671798 150671798 C T KCNH2 Splice_Site p.X103_splice 0.36 TCGA-WE-A8ZT-06 7 150710280 150710280 C T ATG9B 3'UTR 0.34 TCGA-WE-A8ZT-06 7 150754915 150754915 C T CDK5 Silent p.L7L 0.26 TCGA-WE-A8ZT-06 7 155090381 155090381 T G INSIG1 Missense_Mutation p.V129G 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-WE-A8ZT-06 7 155090382 155090382 C T INSIG1 Silent p.V129V 0.33 TCGA-WE-A8ZT-06 7 20199154 20199154 A G MACC1 Missense_Mutation p.L277S 0.35 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 7 20418722 20418722 C T ITGB8 Missense_Mutation p.P146L 0.44 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 7 24689367 24689367 G A MPP6 Missense_Mutation p.R136K 0.33 tolerated(1) benign(0.001) TCGA-WE-A8ZT-06 7 30088991 30088991 C T PLEKHA8 Missense_Mutation p.S197F 0.46 tolerated(0.1) benign(0.078) TCGA-WE-A8ZT-06 7 31018973 31018973 G A GHRHR 3'UTR 0.36 TCGA-WE-A8ZT-06 7 38725348 38725348 C T FAM183B Silent p.Q86Q 0.38 TCGA-WE-A8ZT-06 7 4056812 4056812 G A SDK1 Silent p.L810L 0.57 TCGA-WE-A8ZT-06 7 4056813 4056813 G A SDK1 Missense_Mutation p.A811T 0.55 tolerated(0.1) possibly_damaging(0.733) TCGA-WE-A8ZT-06 7 5413706 5413706 G A TNRC18 Missense_Mutation p.P1070L 0.29 probably_damaging(0.962) TCGA-WE-A8ZT-06 7 57522229 57522229 C T ZNF716 Missense_Mutation p.H35Y 0.38 tolerated(0.06) benign(0.086) TCGA-WE-A8ZT-06 7 6204597 6204597 C T CYTH3 Missense_Mutation p.R393Q 0.42 deleterious(0.04) possibly_damaging(0.802) TCGA-WE-A8ZT-06 7 73483144 73483144 G A ELN 3'UTR 0.19 TCGA-WE-A8ZT-06 7 73972046 73972046 A T GTF2IRD1 Nonsense_Mutation p.K733* 0.33 TCGA-WE-A8ZT-06 7 89753388 89753388 G A RP5-1121E10.2 5'Flank 0.32 TCGA-WE-A8ZT-06 7 94229962 94229962 C T SGCE Missense_Mutation p.G345S 0.35 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 8 101146466 101146466 G A FBXO43 Missense_Mutation p.P601S 0.13 tolerated(0.14) benign(0.138) TCGA-WE-A8ZT-06 8 110474031 110474031 G A PKHD1L1 Missense_Mutation p.G2426E 0.53 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 8 113504837 113504837 C T CSMD3 Missense_Mutation p.G1720E 0.34 deleterious(0) probably_damaging(0.994) TCGA-WE-A8ZT-06 8 113702205 113702205 G A CSMD3 Missense_Mutation p.R683C 0.51 deleterious(0) probably_damaging(0.982) TCGA-WE-A8ZT-06 8 114186060 114186060 G A CSMD3 Silent p.I200I 0.39 TCGA-WE-A8ZT-06 8 124664682 124664682 G A KLHL38 Missense_Mutation p.S162F 0.52 tolerated(0.26) benign(0.093) TCGA-WE-A8ZT-06 8 130788488 130788488 G A GSDMC Silent p.I88I 0.36 TCGA-WE-A8ZT-06 8 131812713 131812713 A C ADCY8 Missense_Mutation p.C1007G 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZT-06 8 133187745 133187745 C T KCNQ3 Missense_Mutation p.M296I 0.54 tolerated(0.47) benign(0.016) TCGA-WE-A8ZT-06 8 142458014 142458014 G A SNORD5 3'Flank 0.38 TCGA-WE-A8ZT-06 8 143928033 143928033 G A GML Missense_Mutation p.G135E 0.38 deleterious(0.05) possibly_damaging(0.698) TCGA-WE-A8ZT-06 8 17137758 17137758 C T VPS37A Silent p.L284L 0.53 TCGA-WE-A8ZT-06 8 1851479 1851479 C T ARHGEF10 Silent p.P561P 0.35 TCGA-WE-A8ZT-06 8 24199149 24199149 C T ADAM28 Missense_Mutation p.S570L 0.25 tolerated(0.07) benign(0.21) TCGA-WE-A8ZT-06 8 24342819 24342819 G A ADAM7 Missense_Mutation p.G302E 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8ZT-06 8 27824014 27824014 C T SCARA5 Missense_Mutation p.G53E 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-WE-A8ZT-06 8 30620805 30620805 C T UBXN8 RNA 0.39 TCGA-WE-A8ZT-06 8 30620807 30620807 C A UBXN8 RNA 0.41 TCGA-WE-A8ZT-06 8 3166020 3166020 C T CSMD1 Missense_Mutation p.D1213N 0.29 benign(0.272) TCGA-WE-A8ZT-06 8 3889446 3889446 G A CSMD1 Silent p.F197F 0.29 TCGA-WE-A8ZT-06 8 39624560 39624560 A G ADAM2 Silent p.F438F 0.39 TCGA-WE-A8ZT-06 8 39776432 39776432 G A IDO1 Nonsense_Mutation p.W134* 0.32 TCGA-WE-A8ZT-06 8 42259489 42259489 C T VDAC3 Silent p.F170F 0.24 TCGA-WE-A8ZT-06 8 42698235 42698235 C T THAP1 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.98) TCGA-WE-A8ZT-06 8 53045666 53045666 C T ST18 Missense_Mutation p.G799S 0.45 deleterious(0.04) benign(0.066) TCGA-WE-A8ZT-06 8 66992756 66992756 G A DNAJC5B Missense_Mutation p.E160K 0.40 tolerated(0.13) possibly_damaging(0.501) TCGA-WE-A8ZT-06 8 98736854 98736854 C T MTDH Missense_Mutation p.P569S 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZT-06 8 98943558 98943558 C T MATN2 Nonsense_Mutation p.Q174* 0.38 TCGA-WE-A8ZT-06 9 100888834 100888834 A C CORO2A Missense_Mutation p.N481K 0.39 deleterious(0.04) possibly_damaging(0.798) TCGA-WE-A8ZT-06 9 101608402 101608402 G A GALNT12 Silent p.Q534Q 0.22 TCGA-WE-A8ZT-06 9 123753533 123753533 G A C5 Silent p.F959F 0.14 TCGA-WE-A8ZT-06 9 137600474 137600474 C T COL5A1 Intron 0.38 TCGA-WE-A8ZT-06 9 137693800 137693800 G A COL5A1 Missense_Mutation p.G985S 0.33 unknown(0) TCGA-WE-A8ZT-06 9 137777211 137777211 C T FCN2 Missense_Mutation p.T143I 0.38 tolerated(1) possibly_damaging(0.466) TCGA-WE-A8ZT-06 9 137777212 137777212 C T FCN2 Silent p.T143T 0.36 TCGA-WE-A8ZT-06 9 138531026 138531026 G A GLT6D1 Missense_Mutation p.S3F 0.44 tolerated(0.13) benign(0) TCGA-WE-A8ZT-06 9 139371041 139371041 G A SEC16A Missense_Mutation p.P343S 0.28 tolerated(0.1) possibly_damaging(0.742) TCGA-WE-A8ZT-06 9 19786808 19786808 C T SLC24A2 Silent p.E19E 0.37 TCGA-WE-A8ZT-06 9 2096660 2096660 G A SMARCA2 Missense_Mutation p.E963K 0.41 possibly_damaging(0.621) TCGA-WE-A8ZT-06 9 21971028 21971028 C T CDKN2A Nonsense_Mutation p.W110* 0.65 TCGA-WE-A8ZT-06 9 2717693 2717693 C T KCNV2 5'UTR 0.37 TCGA-WE-A8ZT-06 9 2717694 2717694 C T KCNV2 5'UTR 0.38 TCGA-WE-A8ZT-06 9 32631402 32631402 G A TAF1L Silent p.S1392S 0.36 TCGA-WE-A8ZT-06 9 3288207 3288207 C T RFX3 Missense_Mutation p.D259N 0.43 tolerated(0.38) benign(0.015) TCGA-WE-A8ZT-06 9 34978098 34978098 C T KIAA1045 Missense_Mutation p.P398L 0.34 tolerated(1) probably_damaging(0.999) TCGA-WE-A8ZT-06 9 37442165 37442165 G A ZBTB5 Silent p.P128P 0.17 TCGA-WE-A8ZT-06 9 37442166 37442166 G A ZBTB5 Missense_Mutation p.P128L 0.19 deleterious(0) possibly_damaging(0.563) TCGA-WE-A8ZT-06 9 38616018 38616018 G A ANKRD18A Missense_Mutation p.A77V 0.22 tolerated(0.06) benign(0.005) TCGA-WE-A8ZT-06 9 71144569 71144569 C T PGM5 Silent p.T567T 0.31 TCGA-WE-A8ZT-06 9 74331448 74331448 C T TMEM2 Missense_Mutation p.G807E 0.38 deleterious(0) possibly_damaging(0.821) TCGA-WE-A8ZT-06 9 80336260 80336260 C T GNAQ Silent p.L353L 0.45 TCGA-WE-A8ZT-06 9 8404652 8404652 G A PTPRD Silent p.D1365D 0.39 TCGA-WE-A8ZT-06 9 84549430 84549430 C T RP11-383M4.6 Intron 0.23 TCGA-WE-A8ZT-06 9 8528768 8528768 G A PTPRD Missense_Mutation p.P122S 0.44 deleterious(0) probably_damaging(0.973) TCGA-WE-A8ZT-06 9 90500517 90500517 G A SPATA31E1 Missense_Mutation p.R372K 0.37 tolerated(0.11) possibly_damaging(0.801) TCGA-WE-A8ZT-06 9 99114318 99114318 A C SLC35D2 Splice_Site p.X140_splice 0.25 TCGA-WE-A8ZT-06 X 100699098 100699098 G T RP1-164F3.8 5'Flank 0.46 TCGA-WE-A8ZT-06 X 101857294 101857294 G A ARMCX5 Silent p.R75R 0.38 TCGA-WE-A8ZT-06 X 101857295 101857295 G A ARMCX5 Missense_Mutation p.E76K 0.39 tolerated(0.36) benign(0.002) TCGA-WE-A8ZT-06 X 102979139 102979139 G A GLRA4 Missense_Mutation p.P121S 0.46 tolerated(0.05) probably_damaging(1) TCGA-WE-A8ZT-06 X 110035366 110035366 G A CHRDL1 Missense_Mutation p.S15L 0.36 tolerated(0.69) benign(0.013) TCGA-WE-A8ZT-06 X 110654222 110654222 C T DCX 5'UTR 0.35 TCGA-WE-A8ZT-06 X 111698485 111698485 G A ZCCHC16 Missense_Mutation p.E177K 0.42 tolerated(0.08) benign(0.067) TCGA-WE-A8ZT-06 X 11316680 11316680 G A AMELX Missense_Mutation p.G67S 0.69 deleterious(0.01) probably_damaging(0.996) TCGA-WE-A8ZT-06 X 122756982 122756982 G A THOC2 Missense_Mutation p.S1219L 0.28 tolerated(0.42) benign(0.001) TCGA-WE-A8ZT-06 X 122760492 122760492 C T THOC2 Missense_Mutation p.E927K 0.32 deleterious(0) possibly_damaging(0.656) TCGA-WE-A8ZT-06 X 128945388 128945388 G A ZDHHC9 Missense_Mutation p.P292L 0.32 deleterious(0.04) benign(0.038) TCGA-WE-A8ZT-06 X 128945389 128945389 G A ZDHHC9 Missense_Mutation p.P292S 0.31 tolerated(0.1) benign(0.038) TCGA-WE-A8ZT-06 X 129370212 129370212 C T ZNF280C Silent p.L249L 0.32 TCGA-WE-A8ZT-06 X 130215857 130215857 C G ARHGAP36 Missense_Mutation p.A73G 0.34 tolerated(0.22) probably_damaging(0.997) TCGA-WE-A8ZT-06 X 130417001 130417001 G A IGSF1 Missense_Mutation p.S302L 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZT-06 X 132160539 132160539 G A USP26 Silent p.F570F 0.36 TCGA-WE-A8ZT-06 X 132351723 132351723 G A TFDP3 Silent p.L189L 0.41 TCGA-WE-A8ZT-06 X 132458494 132458494 A T GPC4 Missense_Mutation p.H130Q 0.38 tolerated(0.45) benign(0.003) TCGA-WE-A8ZT-06 X 135405296 135405296 G A GPR112 Missense_Mutation p.E144K 0.37 tolerated(0.07) benign(0.072) TCGA-WE-A8ZT-06 X 135426902 135426902 C T GPR112 Missense_Mutation p.P346L 0.47 tolerated(0.16) benign(0.006) TCGA-WE-A8ZT-06 X 136113589 136113589 G A GPR101 Missense_Mutation p.S82L 0.35 tolerated(0.39) benign(0.003) TCGA-WE-A8ZT-06 X 13775905 13775905 A G OFD1 Missense_Mutation p.D513G 0.65 deleterious(0.01) benign(0.047) TCGA-WE-A8ZT-06 X 138711880 138711880 G A MCF2 Missense_Mutation p.R198C 0.42 deleterious(0) possibly_damaging(0.816) TCGA-WE-A8ZT-06 X 138813913 138813913 C T ATP11C Missense_Mutation p.R1100K 0.38 tolerated(0.23) benign(0) TCGA-WE-A8ZT-06 X 141291767 141291767 G A MAGEC2 Missense_Mutation p.P3S 0.45 tolerated_low_confidence(0.12) benign(0.021) TCGA-WE-A8ZT-06 X 150868507 150868507 G A PRRG3 Missense_Mutation p.R16Q 0.46 deleterious(0.04) benign(0.045) TCGA-WE-A8ZT-06 X 153225599 153225599 G A HCFC1 Silent p.P366P 0.35 TCGA-WE-A8ZT-06 X 3248074 3248074 C T MXRA5 Missense_Mutation p.D232N 0.68 tolerated(0.72) benign(0.037) TCGA-WE-A8ZT-06 X 37028726 37028726 C T FAM47C Missense_Mutation p.S748F 0.73 deleterious(0) possibly_damaging(0.831) TCGA-WE-A8ZT-06 X 39913231 39913231 A C BCOR Missense_Mutation p.D1628E 0.59 tolerated(1) benign(0.004) TCGA-WE-A8ZT-06 X 70093109 70093109 C T TEX11 Missense_Mutation p.G85R 0.26 tolerated(0.26) benign(0.084) TCGA-WE-A8ZT-06 X 70830622 70830622 G A ACRC Missense_Mutation p.R568Q 0.11 unknown(0) TCGA-WE-A8ZT-06 X 73960593 73960593 G A KIAA2022 Missense_Mutation p.P1267S 0.41 tolerated_low_confidence(0.08) benign(0.02) TCGA-WE-A8ZT-06 X 73962063 73962063 G A KIAA2022 Missense_Mutation p.H777Y 0.39 tolerated(0.12) benign(0.221) TCGA-WE-A8ZT-06 X 84614562 84614562 G A POF1B Missense_Mutation p.P144L 0.44 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-WE-A8ZX-06 10 105207136 105207136 G A CALHM2 Missense_Mutation p.R249C 0.58 deleterious(0) possibly_damaging(0.707) TCGA-WE-A8ZX-06 10 118359616 118359616 G A PNLIPRP1 Missense_Mutation p.S291N 0.55 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 10 119044791 119044791 A G PDZD8 Silent p.L485L 0.63 TCGA-WE-A8ZX-06 10 15255174 15255174 C T FAM171A1 Missense_Mutation p.V805I 0.47 tolerated(0.23) benign(0.357) TCGA-WE-A8ZX-06 10 26589721 26589721 C T GAD2 Missense_Mutation p.A530V 0.58 deleterious(0) probably_damaging(0.976) TCGA-WE-A8ZX-06 10 26802467 26802467 G A APBB1IP Splice_Site p.X231_splice 0.53 TCGA-WE-A8ZX-06 10 28358762 28358762 C T MPP7 Silent p.L381L 0.65 TCGA-WE-A8ZX-06 10 30987327 30987327 C T SVILP1 RNA 0.57 TCGA-WE-A8ZX-06 10 30987388 30987388 C T SVILP1 RNA 0.58 TCGA-WE-A8ZX-06 10 5144686 5144686 G A AKR1C3 Silent p.P230P 0.25 TCGA-WE-A8ZX-06 10 70644615 70644615 C T STOX1 Nonsense_Mutation p.R355* 0.58 TCGA-WE-A8ZX-06 10 88768735 88768735 C T RP11-96C23.10 3'Flank 0.58 TCGA-WE-A8ZX-06 10 96540348 96540348 C T CYP2C19 Nonsense_Mutation p.Q192* 0.57 TCGA-WE-A8ZX-06 10 96707567 96707567 C T CYP2C9 Silent p.G171G 0.64 TCGA-WE-A8ZX-06 10 98820538 98820538 C T SLIT1 Missense_Mutation p.G267E 0.78 tolerated(1) benign(0.021) TCGA-WE-A8ZX-06 10 98825843 98825843 C T SLIT1 Silent p.L138L 0.42 TCGA-WE-A8ZX-06 11 100211918 100211918 C T CNTN5 Missense_Mutation p.S1004F 0.28 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 11 101832675 101832675 C T KIAA1377 Silent p.F303F 0.29 TCGA-WE-A8ZX-06 11 102196208 102196208 G A BIRC3 Missense_Mutation p.D289N 0.30 tolerated(0.32) probably_damaging(0.991) TCGA-WE-A8ZX-06 11 1028301 1028301 C T MUC6 Missense_Mutation p.D560N 0.41 unknown(0) TCGA-WE-A8ZX-06 11 112020822 112020822 C T IL18 Missense_Mutation p.E67K 0.30 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 11 112832373 112832373 C T NCAM1 Silent p.F72F 0.57 TCGA-WE-A8ZX-06 11 113705048 113705048 G A USP28 Nonsense_Mutation p.Q182* 0.41 TCGA-WE-A8ZX-06 11 114118018 114118018 G A ZBTB16 Missense_Mutation p.E575K 0.47 deleterious(0.04) possibly_damaging(0.889) TCGA-WE-A8ZX-06 11 116661378 116661378 C T APOA5 Silent p.E189E 0.40 TCGA-WE-A8ZX-06 11 117691330 117691330 C T FXYD2 Intron 0.34 TCGA-WE-A8ZX-06 11 117695430 117695430 C T FXYD2 5'UTR 0.46 TCGA-WE-A8ZX-06 11 117975512 117975512 C T TMPRSS4 Silent p.A139A 0.28 TCGA-WE-A8ZX-06 11 118498493 118498493 C A PHLDB1 Silent p.G318G 0.30 TCGA-WE-A8ZX-06 11 123476033 123476033 C T GRAMD1B Silent p.Y247Y 0.32 TCGA-WE-A8ZX-06 11 123814354 123814354 C T OR6T1 Silent p.R64R 0.34 TCGA-WE-A8ZX-06 11 124120970 124120970 C T OR8G1 Missense_Mutation p.P183L 0.43 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-WE-A8ZX-06 11 124135232 124135232 C T OR8G5 Silent p.I170I 0.38 TCGA-WE-A8ZX-06 11 124179785 124179785 C T OR8D1 Missense_Mutation p.R293K 0.29 deleterious(0.01) benign(0.059) TCGA-WE-A8ZX-06 11 124440898 124440898 G A OR8A1 Missense_Mutation p.E312K 0.37 deleterious(0.01) benign(0.018) TCGA-WE-A8ZX-06 11 126333178 126333178 C T KIRREL3 Missense_Mutation p.E206K 0.22 tolerated(0.07) probably_damaging(0.995) TCGA-WE-A8ZX-06 11 129306686 129306686 C T BARX2 Silent p.I76I 0.38 TCGA-WE-A8ZX-06 11 130342957 130342957 C T ADAMTS15 Silent p.F698F 0.38 TCGA-WE-A8ZX-06 11 133807714 133807714 C T IGSF9B Silent p.G184G 0.29 TCGA-WE-A8ZX-06 11 14281223 14281223 G A RP11-21L19.1 3'Flank 0.38 TCGA-WE-A8ZX-06 11 18729410 18729410 C T IGSF22 Missense_Mutation p.R1074Q 0.31 tolerated(0.56) benign(0.016) TCGA-WE-A8ZX-06 11 27406815 27406815 G A LGR4 Missense_Mutation p.S201L 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-WE-A8ZX-06 11 27679622 27679622 C T BDNF Missense_Mutation p.V246I 0.33 deleterious(0) possibly_damaging(0.852) TCGA-WE-A8ZX-06 11 31128385 31128385 C T DCDC1 Silent p.K570K 0.36 TCGA-WE-A8ZX-06 11 32637535 32637535 T A CCDC73 Missense_Mutation p.E442D 0.36 deleterious(0.04) benign(0.431) TCGA-WE-A8ZX-06 11 32637647 32637647 C T CCDC73 Missense_Mutation p.S405N 0.30 tolerated(0.26) benign(0.037) TCGA-WE-A8ZX-06 11 43418266 43418266 C T TTC17 Missense_Mutation p.S224F 0.35 deleterious(0) probably_damaging(0.971) TCGA-WE-A8ZX-06 11 47359081 47359081 C T MYBPC3 Silent p.L821L 0.38 TCGA-WE-A8ZX-06 11 5345204 5345204 C T OR51B2 Silent p.V108V 0.30 TCGA-WE-A8ZX-06 11 5537180 5537180 C T UBQLNL Silent p.L164L 0.35 TCGA-WE-A8ZX-06 11 5537284 5537284 C T UBQLNL Missense_Mutation p.G130R 0.31 tolerated(0.08) benign(0.088) TCGA-WE-A8ZX-06 11 55873409 55873409 G A OR8H2 Silent p.V297V 0.27 TCGA-WE-A8ZX-06 11 55944547 55944547 G A OR5J2 Missense_Mutation p.G152R 0.34 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZX-06 11 56019965 56019965 C T OR5T3 Missense_Mutation p.S97L 0.29 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZX-06 11 56344874 56344874 C T OR5M10 Silent p.V108V 0.31 TCGA-WE-A8ZX-06 11 57995683 57995683 G A OR10Q1 Missense_Mutation p.S222F 0.34 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZX-06 11 58206830 58206830 G A OR5B12 Silent p.F265F 0.40 TCGA-WE-A8ZX-06 11 5842147 5842147 C T OR52N2 Silent p.F194F 0.37 TCGA-WE-A8ZX-06 11 58660180 58660180 C T GLYATL1P2 RNA 0.30 TCGA-WE-A8ZX-06 11 58714631 58714631 C T GLYATL1 Intron 0.28 TCGA-WE-A8ZX-06 11 5906000 5906000 C T OR52E4 Missense_Mutation p.P160S 0.27 deleterious(0.02) probably_damaging(0.943) TCGA-WE-A8ZX-06 11 59856291 59856291 C T MS4A2 Missense_Mutation p.S18F 0.38 deleterious(0.01) possibly_damaging(0.878) TCGA-WE-A8ZX-06 11 601610 601610 C T PHRF1 Missense_Mutation p.P354L 0.44 tolerated(0.15) benign(0.154) TCGA-WE-A8ZX-06 11 60620536 60620536 C T PTGDR2 Silent p.A220A 0.42 TCGA-WE-A8ZX-06 11 60777054 60777054 C T CD6 Silent p.S264S 0.22 TCGA-WE-A8ZX-06 11 62951229 62951229 C T SLC22A25 Silent p.K297K 0.31 TCGA-WE-A8ZX-06 11 63487400 63487400 C T RTN3 Missense_Mutation p.H476Y 0.42 deleterious(0.02) benign(0.445) TCGA-WE-A8ZX-06 11 63767718 63767718 G A MACROD1 Silent p.G215G 0.57 TCGA-WE-A8ZX-06 11 64525739 64525739 C T PYGM Silent p.Q169Q 0.34 TCGA-WE-A8ZX-06 11 66114136 66114136 G A B3GNT1 Missense_Mutation p.P294L 0.26 deleterious(0.03) benign(0.288) TCGA-WE-A8ZX-06 11 67198944 67198944 C T RPS6KB2 Nonsense_Mutation p.Q139* 0.34 TCGA-WE-A8ZX-06 11 67223634 67223634 G A CABP4 Intron 0.33 TCGA-WE-A8ZX-06 11 67431206 67431206 G A ALDH3B2 Silent p.T300T 0.27 TCGA-WE-A8ZX-06 11 67926612 67926612 C A SUV420H1 Missense_Mutation p.V401L 0.38 tolerated(0.39) benign(0.006) TCGA-WE-A8ZX-06 11 6815883 6815883 G A OR6A2 3'UTR 0.38 TCGA-WE-A8ZX-06 11 68522159 68522159 G A CPT1A 3'Flank 0.36 TCGA-WE-A8ZX-06 11 68835035 68835035 C T TPCN2 Missense_Mutation p.S264F 0.37 deleterious(0) possibly_damaging(0.904) TCGA-WE-A8ZX-06 11 7110627 7110627 C T RBMXL2 Silent p.S92S 0.40 TCGA-WE-A8ZX-06 11 71946964 71946964 C T INPPL1 Missense_Mutation p.P938L 0.33 tolerated(0.26) benign(0.001) TCGA-WE-A8ZX-06 11 76171063 76171063 C T C11orf30 Missense_Mutation p.P169S 0.33 deleterious(0) possibly_damaging(0.641) TCGA-WE-A8ZX-06 11 77629960 77629960 G A INTS4 Missense_Mutation p.S610F 0.40 deleterious(0) possibly_damaging(0.553) TCGA-WE-A8ZX-06 11 78369243 78369243 C T TENM4 Missense_Mutation p.E2724K 0.32 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZX-06 11 8246176 8246176 G A LMO1 Missense_Mutation p.S153F 0.31 deleterious(0) benign(0.009) TCGA-WE-A8ZX-06 11 9047297 9047297 C T SCUBE2 Missense_Mutation p.E879K 0.39 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZX-06 11 92087245 92087245 C T FAT3 Missense_Mutation p.T656I 0.32 probably_damaging(0.912) TCGA-WE-A8ZX-06 11 92507275 92507275 G A FAT3 Missense_Mutation p.D1422N 0.32 possibly_damaging(0.78) TCGA-WE-A8ZX-06 11 94316730 94316730 C T PIWIL4 Silent p.F210F 0.36 TCGA-WE-A8ZX-06 11 95825988 95825988 G A MAML2 Missense_Mutation p.P403S 0.37 probably_damaging(0.997) TCGA-WE-A8ZX-06 12 11546479 11546479 C T PRB2 Missense_Mutation p.G178E 0.36 tolerated_low_confidence(0.34) unknown(0) TCGA-WE-A8ZX-06 12 117904925 117904925 C T KSR2 3'UTR 0.62 TCGA-WE-A8ZX-06 12 121437345 121437345 G A HNF1A Silent p.Q561Q 0.58 TCGA-WE-A8ZX-06 12 121437346 121437346 G A HNF1A Missense_Mutation p.A562T 0.58 tolerated_low_confidence(0.2) benign(0.004) TCGA-WE-A8ZX-06 12 21028288 21028288 C T SLCO1B3 Missense_Mutation p.P283S 0.28 deleterious(0.02) possibly_damaging(0.67) TCGA-WE-A8ZX-06 12 21727089 21727089 G A GYS2 Missense_Mutation p.H223Y 0.23 deleterious(0.02) benign(0.173) TCGA-WE-A8ZX-06 12 22063775 22063775 G A ABCC9 Silent p.L383L 0.33 TCGA-WE-A8ZX-06 12 25149268 25149268 C T C12orf77 Silent p.P3P 0.36 TCGA-WE-A8ZX-06 12 3040323 3040323 C T TULP3 Missense_Mutation p.R205W 0.32 deleterious(0) probably_damaging(0.976) TCGA-WE-A8ZX-06 12 39761767 39761767 G A KIF21A Missense_Mutation p.S173L 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 12 404745 404745 G A KDM5A Silent p.I1483I 0.32 TCGA-WE-A8ZX-06 12 40681179 40681179 G A LRRK2 Missense_Mutation p.V843M 0.66 deleterious(0) probably_damaging(0.953) TCGA-WE-A8ZX-06 12 43822479 43822479 A T ADAMTS20 Missense_Mutation p.F1205I 0.81 tolerated(0.18) possibly_damaging(0.509) TCGA-WE-A8ZX-06 12 45796980 45796980 C T ANO6 Missense_Mutation p.P601S 0.78 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZX-06 12 46600938 46600938 G A SLC38A1 Missense_Mutation p.S188L 0.05 deleterious(0.04) benign(0.002) TCGA-WE-A8ZX-06 12 47629357 47629357 G A PCED1B Missense_Mutation p.E171K 0.77 tolerated(1) benign(0.001) TCGA-WE-A8ZX-06 12 49689209 49689209 G A PRPH Missense_Mutation p.E76K 0.40 deleterious(0.04) possibly_damaging(0.85) TCGA-WE-A8ZX-06 12 49689986 49689986 G A PRPH Missense_Mutation p.E191K 0.21 deleterious(0.03) probably_damaging(0.916) TCGA-WE-A8ZX-06 12 49994884 49994884 C T FAM186B Missense_Mutation p.G180E 0.15 tolerated(1) benign(0.001) TCGA-WE-A8ZX-06 12 5022024 5022024 G A KCNA1 Missense_Mutation p.D494N 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 12 53459608 53459608 G A SPRYD3 3'UTR 0.50 TCGA-WE-A8ZX-06 12 54911716 54911716 C T NCKAP1L Silent p.I444I 0.48 TCGA-WE-A8ZX-06 12 55356476 55356476 C T TESPA1 Nonsense_Mutation p.W402* 0.57 TCGA-WE-A8ZX-06 12 7527434 7527434 G A CD163L1 Silent p.I1029I 0.41 TCGA-WE-A8ZX-06 12 7556162 7556162 G A CD163L1 Silent p.F459F 0.43 TCGA-WE-A8ZX-06 12 7559384 7559384 C T CD163L1 Silent p.L277L 0.38 TCGA-WE-A8ZX-06 12 80732986 80732986 C T OTOGL Silent p.I1655I 0.56 TCGA-WE-A8ZX-06 12 8610537 8610537 G A CLEC6A Silent p.G25G 0.43 TCGA-WE-A8ZX-06 12 9085275 9085275 C T PHC1 Nonsense_Mutation p.Q408* 0.20 TCGA-WE-A8ZX-06 12 94976067 94976067 C T TMCC3 Missense_Mutation p.G109E 0.64 tolerated(0.19) possibly_damaging(0.606) TCGA-WE-A8ZX-06 13 103483960 103483960 C T BIVM-ERCC5 Missense_Mutation p.S288L 0.47 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-WE-A8ZX-06 13 109535496 109535496 G A MYO16 Silent p.Q483Q 0.28 TCGA-WE-A8ZX-06 13 109540808 109540808 G A MYO16 Missense_Mutation p.D526N 0.48 tolerated(0.16) possibly_damaging(0.756) TCGA-WE-A8ZX-06 13 111175904 111175904 C T RAB20 3'UTR 0.73 TCGA-WE-A8ZX-06 13 24411809 24411809 G A MIPEP Silent p.P475P 0.21 TCGA-WE-A8ZX-06 13 24825995 24825995 C T SPATA13 Missense_Mutation p.S720F 0.28 deleterious(0.02) probably_damaging(0.947) TCGA-WE-A8ZX-06 13 29933435 29933435 G A MTUS2 Missense_Mutation p.G991E 0.60 deleterious(0.03) benign(0.04) TCGA-WE-A8ZX-06 13 32798487 32798487 C T FRY Silent p.L1627L 0.30 TCGA-WE-A8ZX-06 13 38158988 38158988 C T POSTN Missense_Mutation p.E325K 0.43 deleterious(0.01) possibly_damaging(0.84) TCGA-WE-A8ZX-06 13 38213246 38213246 C T TRPC4 Silent p.V719V 0.44 TCGA-WE-A8ZX-06 13 39454829 39454829 G A FREM2 Missense_Mutation p.E3139K 0.43 tolerated_low_confidence(0.79) benign(0) TCGA-WE-A8ZX-06 13 41705584 41705584 G A KBTBD6 Missense_Mutation p.P355L 0.45 tolerated(0.07) possibly_damaging(0.558) TCGA-WE-A8ZX-06 13 42461454 42461454 A G VWA8 Missense_Mutation p.V232A 0.42 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 13 49776046 49776046 C T FNDC3A Missense_Mutation p.P1033L 0.31 deleterious(0.01) possibly_damaging(0.798) TCGA-WE-A8ZX-06 13 93518551 93518551 G A GPC5 Missense_Mutation p.M526I 0.28 tolerated(0.1) benign(0.007) TCGA-WE-A8ZX-06 14 102805195 102805195 G A ZNF839 Missense_Mutation p.E568K 0.57 tolerated(0.24) probably_damaging(0.932) TCGA-WE-A8ZX-06 14 106110225 106110225 C T IGHG2 Missense_Mutation p.M131I 0.57 tolerated(0.11) benign(0.161) TCGA-WE-A8ZX-06 14 21109614 21109614 G A OR6S1 Silent p.I79I 0.52 TCGA-WE-A8ZX-06 14 21469473 21469473 G A SLC39A2 Missense_Mutation p.R222Q 0.26 tolerated(0.15) benign(0.089) TCGA-WE-A8ZX-06 14 21542562 21542562 C T ARHGEF40 Missense_Mutation p.R225W 0.21 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZX-06 14 21861870 21861870 G A CHD8 Silent p.H2028H 0.40 TCGA-WE-A8ZX-06 14 21861871 21861871 T A CHD8 Missense_Mutation p.H2028L 0.40 tolerated_low_confidence(0.29) benign(0) TCGA-WE-A8ZX-06 14 23902758 23902758 C T MYH7 Missense_Mutation p.E62K 0.71 tolerated(0.76) benign(0.025) TCGA-WE-A8ZX-06 14 24612840 24612840 G A PSME2 Missense_Mutation p.A198V 0.60 tolerated(0.55) benign(0.03) TCGA-WE-A8ZX-06 14 24841756 24841756 G A NFATC4 Missense_Mutation p.E499K 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZX-06 14 24846978 24846978 C T NFATC4 3'UTR 0.62 TCGA-WE-A8ZX-06 14 24884780 24884780 C T NYNRIN Silent p.L1275L 0.56 TCGA-WE-A8ZX-06 14 33292110 33292110 C T AKAP6 Silent p.L1697L 0.69 TCGA-WE-A8ZX-06 14 35498368 35498368 C T SRP54 3'UTR 0.33 TCGA-WE-A8ZX-06 14 36211635 36211635 G A RALGAPA1 Missense_Mutation p.P463L 0.68 tolerated(0.1) benign(0.018) TCGA-WE-A8ZX-06 14 36211636 36211636 G A RALGAPA1 Missense_Mutation p.P463S 0.65 tolerated(0.52) benign(0.03) TCGA-WE-A8ZX-06 14 59835430 59835430 C T DAAM1 Silent p.S1030S 0.35 TCGA-WE-A8ZX-06 14 70459184 70459184 G A SMOC1 Missense_Mutation p.G193R 0.12 tolerated(0.27) probably_damaging(1) TCGA-WE-A8ZX-06 14 71517428 71517428 C A PCNX Silent p.I1466I 0.11 TCGA-WE-A8ZX-06 14 79175790 79175790 C T NRXN3 Silent p.I111I 0.53 TCGA-WE-A8ZX-06 14 79175928 79175928 G A NRXN3 Silent p.V157V 0.65 TCGA-WE-A8ZX-06 14 91939663 91939663 G A SMEK1 Missense_Mutation p.P427S 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-WE-A8ZX-06 14 91948303 91948303 G A SMEK1 Missense_Mutation p.H178Y 0.31 deleterious(0) benign(0.094) TCGA-WE-A8ZX-06 14 94063707 94063707 G A UNC79 Missense_Mutation p.E888K 0.50 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZX-06 14 94780977 94780977 G A SERPINA6 Silent p.L3L 0.56 TCGA-WE-A8ZX-06 15 102197160 102197160 C T TARSL2 Missense_Mutation p.R742Q 0.35 deleterious(0.02) possibly_damaging(0.675) TCGA-WE-A8ZX-06 15 20488755 20488755 G A CHEK2P2 RNA 0.10 TCGA-WE-A8ZX-06 15 22383258 22383258 C T OR4N4 Silent p.F262F 0.22 TCGA-WE-A8ZX-06 15 25223674 25223674 C T SNRPN 3'UTR 0.27 TCGA-WE-A8ZX-06 15 25335099 25335099 C T SNHG14 Intron 0.34 TCGA-WE-A8ZX-06 15 40584087 40584087 G A PLCB2 Silent p.V855V 0.31 TCGA-WE-A8ZX-06 15 41228584 41228584 C T DLL4 Missense_Mutation p.P467S 0.28 deleterious(0.01) possibly_damaging(0.697) TCGA-WE-A8ZX-06 15 41377684 41377684 G A INO80 Silent p.A252A 0.27 TCGA-WE-A8ZX-06 15 41377685 41377685 G A INO80 Missense_Mutation p.A252V 0.26 tolerated(0.1) possibly_damaging(0.906) TCGA-WE-A8ZX-06 15 42169442 42169442 C T SPTBN5 Missense_Mutation p.V1195I 0.27 benign(0.046) TCGA-WE-A8ZX-06 15 43579513 43579513 C T TGM7 Missense_Mutation p.G277E 0.30 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 15 43814185 43814185 C T MAP1A Nonsense_Mutation p.Q172* 0.39 TCGA-WE-A8ZX-06 15 48060812 48060812 G A SEMA6D Missense_Mutation p.M600I 0.30 tolerated(0.44) benign(0.001) TCGA-WE-A8ZX-06 15 56719803 56719803 G A TEX9 Missense_Mutation p.D322N 0.33 deleterious(0.01) possibly_damaging(0.678) TCGA-WE-A8ZX-06 15 64710818 64710818 C T TRIP4 Nonsense_Mutation p.Q417* 0.33 TCGA-WE-A8ZX-06 15 68613817 68613817 C T ITGA11 Missense_Mutation p.E783K 0.43 deleterious(0.03) benign(0.177) TCGA-WE-A8ZX-06 15 73415086 73415086 G T NEO1 Silent p.V223V 0.39 TCGA-WE-A8ZX-06 15 73735636 73735636 C T C15orf60 Missense_Mutation p.P37L 0.27 tolerated(0.37) benign(0.004) TCGA-WE-A8ZX-06 15 74173823 74173823 C T TBC1D21 Silent p.F48F 0.34 TCGA-WE-A8ZX-06 15 78212084 78212084 C T RP11-114H24.7 Intron 0.37 TCGA-WE-A8ZX-06 15 78473131 78473131 C T ACSBG1 Missense_Mutation p.V407M 0.28 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZX-06 15 79502188 79502188 G A MIR184 RNA 0.45 TCGA-WE-A8ZX-06 15 83333150 83333150 C T AP3B2 Missense_Mutation p.E725K 0.34 tolerated(0.35) benign(0.292) TCGA-WE-A8ZX-06 15 91358362 91358362 C T BLM Silent p.S1369S 0.40 TCGA-WE-A8ZX-06 16 11260283 11260283 C T CLEC16A Missense_Mutation p.P894S 0.10 tolerated(1) benign(0.001) TCGA-WE-A8ZX-06 16 1252295 1252295 G A CACNA1H Silent p.T615T 0.45 TCGA-WE-A8ZX-06 16 1400860 1400860 C T TSR3 Silent p.R158R 0.30 TCGA-WE-A8ZX-06 16 15880560 15880560 T G MYH11 Missense_Mutation p.N187T 0.45 probably_damaging(0.973) TCGA-WE-A8ZX-06 16 16263523 16263523 C T ABCC6 Missense_Mutation p.G992E 0.36 deleterious(0) possibly_damaging(0.878) TCGA-WE-A8ZX-06 16 21123013 21123013 C T DNAH3 Missense_Mutation p.R678Q 0.27 tolerated(0.12) benign(0.023) TCGA-WE-A8ZX-06 16 21212720 21212720 G A ZP2 Missense_Mutation p.S555F 0.49 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZX-06 16 23716403 23716403 C T ERN2 Missense_Mutation p.V267M 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-WE-A8ZX-06 16 23767210 23767210 C T CHP2 Silent p.P61P 0.24 TCGA-WE-A8ZX-06 16 27790022 27790022 C T KIAA0556 3'UTR 0.52 TCGA-WE-A8ZX-06 16 28493813 28493813 G A CLN3 Silent p.F297F 0.37 TCGA-WE-A8ZX-06 16 28925808 28925808 C T RABEP2 Missense_Mutation p.G215R 0.40 deleterious(0.03) probably_damaging(0.992) TCGA-WE-A8ZX-06 16 2903962 2903962 G A PRSS22 Silent p.V207V 0.19 TCGA-WE-A8ZX-06 16 29999175 29999175 C T TAOK2 Silent p.I1194I 0.21 TCGA-WE-A8ZX-06 16 31195646 31195646 C T FUS Missense_Mutation p.P151L 0.24 deleterious(0.02) unknown(0) TCGA-WE-A8ZX-06 16 31202739 31202739 C T FUS Missense_Mutation p.R521C 0.14 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-WE-A8ZX-06 16 31228275 31228275 C T PYDC1 Missense_Mutation p.M25I 0.29 tolerated(0.1) benign(0.216) TCGA-WE-A8ZX-06 16 31540000 31540000 G A AHSP Silent p.P99P 0.52 TCGA-WE-A8ZX-06 16 3254873 3254873 C T OR1F1 Silent p.T209T 0.45 TCGA-WE-A8ZX-06 16 32891008 32891008 A G SLC6A10P RNA 0.41 TCGA-WE-A8ZX-06 16 3778065 3778065 G A CREBBP Missense_Mutation p.S2328L 0.40 unknown(0) TCGA-WE-A8ZX-06 16 57957284 57957284 C T CNGB1 Silent p.R512R 0.65 TCGA-WE-A8ZX-06 16 68265962 68265962 C T ESRP2 Missense_Mutation p.V348M 0.76 deleterious(0.04) benign(0.298) TCGA-WE-A8ZX-06 16 68597435 68597435 C T ZFP90 Missense_Mutation p.P249S 0.57 tolerated(0.22) benign(0.006) TCGA-WE-A8ZX-06 16 77910335 77910335 G A VAT1L Missense_Mutation p.S264N 0.68 tolerated(0.72) benign(0.009) TCGA-WE-A8ZX-06 16 81914514 81914514 G A PLCG2 Splice_Site p.X217_splice 0.70 TCGA-WE-A8ZX-06 16 83378519 83378519 C T CDH13 Missense_Mutation p.P277L 0.58 deleterious(0.05) benign(0.003) TCGA-WE-A8ZX-06 16 89813022 89813022 C T FANCA Silent p.T1161T 0.59 TCGA-WE-A8ZX-06 16 9858587 9858587 C T GRIN2A Silent p.K938K 0.13 TCGA-WE-A8ZX-06 17 10310296 10310296 C T MYH8 Missense_Mutation p.E656K 0.61 deleterious(0.02) possibly_damaging(0.873) TCGA-WE-A8ZX-06 17 10312751 10312751 G A MYH8 Missense_Mutation p.S581F 0.55 deleterious(0) probably_damaging(0.988) TCGA-WE-A8ZX-06 17 10315772 10315772 G A MYH8 Missense_Mutation p.T444I 0.57 tolerated(0.33) benign(0.011) TCGA-WE-A8ZX-06 17 10362685 10362685 C T MYH4 Silent p.Q490Q 0.62 TCGA-WE-A8ZX-06 17 10435073 10435073 C T MYH2 Missense_Mutation p.M858I 0.65 deleterious(0.01) benign(0.018) TCGA-WE-A8ZX-06 17 11554538 11554538 G A DNAH9 Missense_Mutation p.M750I 0.63 benign(0.002) TCGA-WE-A8ZX-06 17 1564441 1564441 G A PRPF8 Missense_Mutation p.P1452S 0.87 deleterious(0.02) possibly_damaging(0.483) TCGA-WE-A8ZX-06 17 16455934 16455934 A G ZNF287 Missense_Mutation p.Y508H 0.54 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZX-06 17 16667506 16667506 C T CCDC144A Intron 0.29 TCGA-WE-A8ZX-06 17 16735652 16735652 C T KRT16P2 RNA 0.24 TCGA-WE-A8ZX-06 17 19680999 19680999 G A ULK2 Nonsense_Mutation p.Q983* 0.73 TCGA-WE-A8ZX-06 17 30322685 30322685 C T SUZ12 Silent p.F566F 0.69 TCGA-WE-A8ZX-06 17 3527343 3527343 G A SHPK Missense_Mutation p.R165C 0.51 tolerated(0.08) benign(0.009) TCGA-WE-A8ZX-06 17 39150021 39150021 C T KRTAP3-3 3'UTR 0.65 TCGA-WE-A8ZX-06 17 39919422 39919422 G A JUP Missense_Mutation p.A437V 0.64 deleterious(0.01) benign(0.195) TCGA-WE-A8ZX-06 17 5037285 5037285 G A USP6 Missense_Mutation p.G163E 0.66 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-WE-A8ZX-06 17 56423569 56423569 G A SUPT4H1 3'UTR 0.80 TCGA-WE-A8ZX-06 17 62856132 62856132 G A LRRC37A3 Missense_Mutation p.P1378S 0.55 tolerated(0.07) benign(0.069) TCGA-WE-A8ZX-06 17 72739453 72739453 A G RAB37 Missense_Mutation p.N119D 0.62 tolerated(0.19) benign(0.22) TCGA-WE-A8ZX-06 17 73774607 73774607 A T H3F3B 3'UTR 0.68 TCGA-WE-A8ZX-06 17 7577113 7577113 A T TP53 Nonsense_Mutation p.C275* 0.77 TCGA-WE-A8ZX-06 17 76440780 76440780 C T DNAH17 Missense_Mutation p.E3798K 0.58 possibly_damaging(0.749) TCGA-WE-A8ZX-06 17 77709207 77709207 G A ENPP7 Silent p.R255R 0.57 TCGA-WE-A8ZX-06 17 7990774 7990774 G A ALOX12B 5'UTR 0.54 TCGA-WE-A8ZX-06 17 8221923 8221923 G A ARHGEF15 Missense_Mutation p.M605I 0.64 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZX-06 18 12329653 12329653 C T AFG3L2 Missense_Mutation p.D769N 0.21 tolerated(0.06) benign(0.32) TCGA-WE-A8ZX-06 18 14478225 14478225 C T CXADRP3 RNA 0.37 TCGA-WE-A8ZX-06 18 19996605 19996605 C T CTAGE1 Missense_Mutation p.M390I 0.41 deleterious(0.01) benign(0) TCGA-WE-A8ZX-06 18 21209915 21209915 C T ANKRD29 Missense_Mutation p.D144N 0.29 deleterious(0) benign(0.078) TCGA-WE-A8ZX-06 18 21530124 21530124 G A LAMA3 Splice_Site p.X3214_splice 0.47 TCGA-WE-A8ZX-06 18 29122649 29122649 G A DSG2 Missense_Mutation p.S723N 0.20 tolerated(0.57) benign(0.017) TCGA-WE-A8ZX-06 18 30092817 30092817 C T WBP11P1 RNA 0.20 TCGA-WE-A8ZX-06 18 30093455 30093455 G A WBP11P1 RNA 0.45 TCGA-WE-A8ZX-06 18 43217078 43217078 C T SLC14A2 Silent p.F258F 0.24 TCGA-WE-A8ZX-06 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.02 deleterious(0.03) probably_damaging(0.971) TCGA-WE-A8ZX-06 18 47563265 47563265 G A MYO5B Missense_Mutation p.P137L 0.45 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 18 48325610 48325610 G A MRO 3'UTR 0.24 TCGA-WE-A8ZX-06 18 50278545 50278545 G A DCC Silent p.V71V 0.15 TCGA-WE-A8ZX-06 18 51863572 51863572 A T STARD6 Missense_Mutation p.F64I 0.20 tolerated(0.11) possibly_damaging(0.828) TCGA-WE-A8ZX-06 18 59166520 59166520 C T CDH20 Silent p.I116I 0.23 TCGA-WE-A8ZX-06 18 61233848 61233848 G A SERPINB12 Silent p.R274R 0.40 TCGA-WE-A8ZX-06 18 61261718 61261718 T G SERPINB13 Missense_Mutation p.F201C 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 18 61262398 61262398 G A SERPINB13 Missense_Mutation p.D251N 0.48 tolerated(0.08) probably_damaging(0.97) TCGA-WE-A8ZX-06 18 61620703 61620703 C T HMSD Missense_Mutation p.S5L 0.26 deleterious(0.01) possibly_damaging(0.819) TCGA-WE-A8ZX-06 18 64197178 64197178 G A CDH19 Silent p.I454I 0.50 TCGA-WE-A8ZX-06 18 67866702 67866702 G A RTTN Missense_Mutation p.P176S 0.15 deleterious(0.02) probably_damaging(0.911) TCGA-WE-A8ZX-06 18 7231245 7231245 G A LRRC30 Missense_Mutation p.G37R 0.41 tolerated(0.09) probably_damaging(0.999) TCGA-WE-A8ZX-06 18 77211120 77211120 G A NFATC1 Missense_Mutation p.E573K 0.26 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 19 10084626 10084626 G A COL5A3 Missense_Mutation p.P1176L 0.35 probably_damaging(0.998) TCGA-WE-A8ZX-06 19 10429034 10429034 G A RAVER1 Silent p.P637P 0.36 TCGA-WE-A8ZX-06 19 1047475 1047475 C T ABCA7 Silent p.F697F 0.53 TCGA-WE-A8ZX-06 19 11510744 11510744 G A RGL3 Missense_Mutation p.P541S 0.29 tolerated(0.79) unknown(0) TCGA-WE-A8ZX-06 19 12638571 12638571 G A ZNF564 Silent p.S117S 0.28 TCGA-WE-A8ZX-06 19 15651348 15651348 C T CYP4F22 Silent p.F253F 0.36 TCGA-WE-A8ZX-06 19 15726622 15726622 C T AD000091.2 5'Flank 0.25 TCGA-WE-A8ZX-06 19 15839066 15839066 C T OR10H2 Silent p.I71I 0.24 TCGA-WE-A8ZX-06 19 15839067 15839067 C T OR10H2 Missense_Mutation p.L72F 0.24 tolerated(0.26) benign(0.032) TCGA-WE-A8ZX-06 19 17036181 17036181 C T CPAMD8 Silent p.G1171G 0.46 TCGA-WE-A8ZX-06 19 18375668 18375668 G A KIAA1683 Silent p.L894L 0.33 TCGA-WE-A8ZX-06 19 19344609 19344609 C T NCAN Missense_Mutation p.P1011S 0.40 deleterious(0.01) benign(0.255) TCGA-WE-A8ZX-06 19 19369386 19369386 G A HAPLN4 Missense_Mutation p.R255C 0.28 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZX-06 19 19744731 19744731 G A GMIP Nonsense_Mutation p.Q785* 0.44 TCGA-WE-A8ZX-06 19 19744732 19744732 G A GMIP Silent p.S784S 0.47 TCGA-WE-A8ZX-06 19 23541825 23541825 T C ZNF91 3'UTR 0.31 TCGA-WE-A8ZX-06 19 24310351 24310351 C T ZNF254 Missense_Mutation p.P517S 0.28 deleterious(0.04) possibly_damaging(0.553) TCGA-WE-A8ZX-06 19 2807713 2807713 C T THOP1 Missense_Mutation p.A387V 0.42 tolerated(0.06) possibly_damaging(0.652) TCGA-WE-A8ZX-06 19 29698872 29698872 G A UQCRFS1 Silent p.F136F 0.22 TCGA-WE-A8ZX-06 19 2989249 2989249 G A TLE6 Missense_Mutation p.V311M 0.39 deleterious(0) probably_damaging(0.994) TCGA-WE-A8ZX-06 19 35775978 35775978 C T HAMP 3'UTR 0.33 TCGA-WE-A8ZX-06 19 35849867 35849867 C T FFAR3 Silent p.F25F 0.16 TCGA-WE-A8ZX-06 19 35849909 35849909 C T FFAR3 Silent p.F39F 0.27 TCGA-WE-A8ZX-06 19 37487911 37487911 C T ZNF568 Nonsense_Mutation p.R376* 0.30 TCGA-WE-A8ZX-06 19 37579990 37579990 G A ZNF420 5'UTR 0.37 TCGA-WE-A8ZX-06 19 39369677 39369677 G A SIRT2 3'UTR 0.50 TCGA-WE-A8ZX-06 19 40541057 40541057 G A ZNF780B Missense_Mutation p.S570L 0.42 tolerated(0.05) benign(0.009) TCGA-WE-A8ZX-06 19 42231168 42231168 C T CEACAM5 Missense_Mutation p.P681S 0.34 deleterious(0) benign(0.018) TCGA-WE-A8ZX-06 19 43406513 43406513 C T PSG6 3'Flank 0.37 TCGA-WE-A8ZX-06 19 43690648 43690648 C T PSG5 5'UTR 0.31 TCGA-WE-A8ZX-06 19 43708324 43708324 C T PSG4 Silent p.G48G 0.32 TCGA-WE-A8ZX-06 19 43866295 43866295 C T CD177 3'UTR 0.33 TCGA-WE-A8ZX-06 19 44223287 44223287 G A IRGC Missense_Mutation p.E193K 0.40 tolerated(0.4) possibly_damaging(0.833) TCGA-WE-A8ZX-06 19 44591126 44591126 C T ZNF284 Missense_Mutation p.R499C 0.41 deleterious(0.05) possibly_damaging(0.878) TCGA-WE-A8ZX-06 19 4475448 4475448 C T HDGFRP2 Silent p.F52F 0.38 TCGA-WE-A8ZX-06 19 45563834 45563834 G A CLASRP Missense_Mutation p.R271Q 0.68 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZX-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.31 TCGA-WE-A8ZX-06 19 47278857 47278857 G A SLC1A5 Silent p.V512V 0.36 TCGA-WE-A8ZX-06 19 4816869 4816869 G C TICAM1 Silent p.L507L 0.45 TCGA-WE-A8ZX-06 19 50358231 50358231 C T PTOV1 Missense_Mutation p.T152I 0.33 tolerated(0.05) probably_damaging(0.947) TCGA-WE-A8ZX-06 19 50453284 50453284 C T SIGLEC11 Silent p.R680R 0.36 TCGA-WE-A8ZX-06 19 51022214 51022214 G A LRRC4B Silent p.L252L 0.34 TCGA-WE-A8ZX-06 19 51274082 51274082 G A GPR32 Silent p.T75T 0.32 TCGA-WE-A8ZX-06 19 51330344 51330344 G A KLK15 Missense_Mutation p.R91W 0.33 deleterious(0.03) probably_damaging(0.912) TCGA-WE-A8ZX-06 19 51453116 51453116 C T KLK5 Silent p.R110R 0.38 TCGA-WE-A8ZX-06 19 51729162 51729162 C T CD33 Silent p.P174P 0.38 TCGA-WE-A8ZX-06 19 51919980 51919980 G A SIGLEC10 Missense_Mutation p.H216Y 0.43 deleterious(0.01) benign(0.433) TCGA-WE-A8ZX-06 19 54696008 54696008 C T TSEN34 Missense_Mutation p.P177S 0.35 tolerated(0.22) benign(0.001) TCGA-WE-A8ZX-06 19 54848252 54848252 C T LILRA4 Missense_Mutation p.G372E 0.38 tolerated(0.15) benign(0.002) TCGA-WE-A8ZX-06 19 55144526 55144526 G A LILRB1 Missense_Mutation p.E340K 0.40 deleterious(0.03) benign(0.083) TCGA-WE-A8ZX-06 19 55255401 55255401 G T KIR2DL3 Missense_Mutation p.V177F 0.39 tolerated(0.7) benign(0.434) TCGA-WE-A8ZX-06 19 55299919 55299919 C T KIR2DL1 3'Flank 0.50 TCGA-WE-A8ZX-06 19 56228259 56228259 C T NLRP9 Missense_Mutation p.G722E 0.33 deleterious(0) possibly_damaging(0.802) TCGA-WE-A8ZX-06 19 56467434 56467434 G A NLRP8 Nonsense_Mutation p.W670* 0.44 TCGA-WE-A8ZX-06 19 57175471 57175471 C T ZNF835 Missense_Mutation p.D366N 0.29 deleterious(0.03) possibly_damaging(0.892) TCGA-WE-A8ZX-06 19 58153588 58153588 T A ZNF211 3'UTR 0.33 TCGA-WE-A8ZX-06 19 5867397 5867397 G A FUT5 Missense_Mutation p.P114S 0.25 tolerated(0.6) benign(0.053) TCGA-WE-A8ZX-06 19 58966817 58966817 C T ZNF324B Missense_Mutation p.P169L 0.22 tolerated(0.16) possibly_damaging(0.489) TCGA-WE-A8ZX-06 19 6908704 6908704 C A EMR1 Missense_Mutation p.S348Y 0.33 deleterious(0) possibly_damaging(0.853) TCGA-WE-A8ZX-06 19 7591734 7591734 C T MCOLN1 Missense_Mutation p.L165F 0.43 deleterious(0.03) probably_damaging(0.974) TCGA-WE-A8ZX-06 19 7677802 7677802 C T CAMSAP3 Missense_Mutation p.P835L 0.38 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 19 829639 829639 C T AZU1 Missense_Mutation p.S98F 0.37 tolerated(0.21) benign(0.06) TCGA-WE-A8ZX-06 19 8651020 8651020 C T ADAMTS10 Silent p.E882E 0.34 TCGA-WE-A8ZX-06 19 8982235 8982235 G A MUC16 Missense_Mutation p.H14014Y 0.35 possibly_damaging(0.859) TCGA-WE-A8ZX-06 19 9017000 9017000 G A MUC16 Silent p.I12665I 0.33 TCGA-WE-A8ZX-06 19 9019291 9019291 G A MUC16 Silent p.S12532S 0.37 TCGA-WE-A8ZX-06 19 9048110 9048110 G A MUC16 Missense_Mutation p.S11174F 0.46 benign(0.027) TCGA-WE-A8ZX-06 19 9049388 9049388 C T MUC16 Missense_Mutation p.R10748K 0.32 benign(0.007) TCGA-WE-A8ZX-06 19 9049897 9049897 C G MUC16 Missense_Mutation p.E10578D 0.35 benign(0.007) TCGA-WE-A8ZX-06 19 9070263 9070263 G A MUC16 Missense_Mutation p.S5728F 0.37 unknown(0) TCGA-WE-A8ZX-06 19 9076371 9076371 C T MUC16 Missense_Mutation p.S3692N 0.13 unknown(0) TCGA-WE-A8ZX-06 19 9089904 9089904 G C MUC16 Silent p.S637S 0.42 TCGA-WE-A8ZX-06 19 9965302 9965302 A T OLFM2 Missense_Mutation p.Y309N 0.32 deleterious(0) probably_damaging(0.992) TCGA-WE-A8ZX-06 1 103345383 103345383 G A COL11A1 Silent p.F1710F 0.26 TCGA-WE-A8ZX-06 1 103377722 103377722 C T COL11A1 Missense_Mutation p.G1360E 0.44 unknown(0) TCGA-WE-A8ZX-06 1 103474068 103474068 C T COL11A1 Missense_Mutation p.G545E 0.19 unknown(0) TCGA-WE-A8ZX-06 1 109714518 109714518 C T KIAA1324 Silent p.I166I 0.20 TCGA-WE-A8ZX-06 1 11008534 11008534 G A C1orf127 Missense_Mutation p.P553L 0.11 tolerated(0.07) probably_damaging(0.998) TCGA-WE-A8ZX-06 1 111061088 111061088 G A KCNA10 Missense_Mutation p.P108S 0.38 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 1 11199701 11199701 G A MTOR Silent p.I1629I 0.23 TCGA-WE-A8ZX-06 1 114952870 114952870 G A TRIM33 Silent p.P710P 0.44 TCGA-WE-A8ZX-06 1 116676081 116676081 G A MAB21L3 3'UTR 0.67 TCGA-WE-A8ZX-06 1 1168134 1168134 C T B3GALT6 Missense_Mutation p.S159F 0.25 deleterious(0) possibly_damaging(0.616) TCGA-WE-A8ZX-06 1 117552777 117552777 G A CD101 Missense_Mutation p.G117S 0.32 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 1 119925547 119925547 C T HAO2 Silent p.L47L 0.49 TCGA-WE-A8ZX-06 1 120458353 120458353 G A NOTCH2 Missense_Mutation p.A2331V 0.52 tolerated(0.32) benign(0.114) TCGA-WE-A8ZX-06 1 12253097 12253097 C T TNFRSF1B Silent p.L243L 0.24 TCGA-WE-A8ZX-06 1 12921699 12921699 C T PRAMEF2 3'UTR 0.12 TCGA-WE-A8ZX-06 1 13036662 13036662 G C PRAMEF22 Missense_Mutation p.C245S 0.13 tolerated(0.4) benign(0.023) TCGA-WE-A8ZX-06 1 145368595 145368595 T C NBPF10 Missense_Mutation p.F3525L 0.14 benign(0.001) TCGA-WE-A8ZX-06 1 145561514 145561514 C T ANKRD35 Missense_Mutation p.P401L 0.33 tolerated(0.19) possibly_damaging(0.908) TCGA-WE-A8ZX-06 1 145562742 145562742 G A ANKRD35 Silent p.L810L 0.46 TCGA-WE-A8ZX-06 1 152057789 152057789 G A TCHHL1 Missense_Mutation p.S790F 0.36 tolerated(0.2) benign(0.03) TCGA-WE-A8ZX-06 1 152326367 152326367 G A FLG2 Missense_Mutation p.H1299Y 0.38 benign(0.003) TCGA-WE-A8ZX-06 1 152329292 152329292 C T FLG2 Missense_Mutation p.G324R 0.43 unknown(0) TCGA-WE-A8ZX-06 1 152975803 152975803 G A SPRR3 Missense_Mutation p.E103K 0.37 deleterious(0.02) possibly_damaging(0.803) TCGA-WE-A8ZX-06 1 153303378 153303378 C T PGLYRP4 Silent p.L329L 0.34 TCGA-WE-A8ZX-06 1 153409650 153409650 C T S100A7L2 Missense_Mutation p.D75N 0.43 tolerated(0.06) benign(0.065) TCGA-WE-A8ZX-06 1 154569707 154569707 G A ADAR Silent p.F657F 0.21 TCGA-WE-A8ZX-06 1 155640165 155640165 G A YY1AP1 Missense_Mutation p.S363F 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-WE-A8ZX-06 1 155932926 155932926 G A ARHGEF2 Missense_Mutation p.T258I 0.34 deleterious(0.03) benign(0.079) TCGA-WE-A8ZX-06 1 156130236 156130236 G A SEMA4A Missense_Mutation p.G191R 0.37 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 1 156142670 156142670 C T SEMA4A Silent p.F396F 0.35 TCGA-WE-A8ZX-06 1 156593703 156593703 C T HAPLN2 Missense_Mutation p.P64S 0.33 tolerated(0.54) benign(0.114) TCGA-WE-A8ZX-06 1 156821858 156821858 G A INSRR Nonsense_Mutation p.Q255* 0.45 TCGA-WE-A8ZX-06 1 157485271 157485271 G A FCRL5 3'UTR 0.58 TCGA-WE-A8ZX-06 1 158259764 158259764 G A CD1C 5'UTR 0.32 TCGA-WE-A8ZX-06 1 158669822 158669822 C T OR6K2 Silent p.E207E 0.38 TCGA-WE-A8ZX-06 1 159277749 159277749 C G FCER1A 3'UTR 0.32 TCGA-WE-A8ZX-06 1 159284027 159284027 G A OR10J3 Silent p.A141A 0.40 TCGA-WE-A8ZX-06 1 159410320 159410320 G A OR10J1 Missense_Mutation p.V258I 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8ZX-06 1 160141106 160141106 G C ATP1A4 Missense_Mutation p.E519D 0.42 deleterious(0) probably_damaging(0.933) TCGA-WE-A8ZX-06 1 160313059 160313059 G A COPA 5'Flank 0.33 TCGA-WE-A8ZX-06 1 162372562 162372562 G A SH2D1B Silent p.I55I 0.31 TCGA-WE-A8ZX-06 1 167032946 167032946 G A GPA33 Silent p.I148I 0.36 TCGA-WE-A8ZX-06 1 16901664 16901664 G A NBPF1 Missense_Mutation p.S727L 0.26 tolerated(0.27) benign(0.165) TCGA-WE-A8ZX-06 1 171556302 171556302 C T PRRC2C Missense_Mutation p.P2635L 0.54 probably_damaging(0.973) TCGA-WE-A8ZX-06 1 171556303 171556303 T A PRRC2C Silent p.P2635P 0.54 TCGA-WE-A8ZX-06 1 173493202 173493202 T G SLC9C2 Missense_Mutation p.N849T 0.26 tolerated(0.06) benign(0.367) TCGA-WE-A8ZX-06 1 174418135 174418135 C T GPR52 Missense_Mutation p.P296S 0.30 tolerated(0.18) benign(0.081) TCGA-WE-A8ZX-06 1 177927336 177927336 G A SEC16B Silent p.P432P 0.45 TCGA-WE-A8ZX-06 1 179520384 179520384 C T NPHS2 Missense_Mutation p.G359E 0.38 deleterious(0.01) possibly_damaging(0.46) TCGA-WE-A8ZX-06 1 179562721 179562721 G A TDRD5 Missense_Mutation p.R120Q 0.34 tolerated(0.18) benign(0.083) TCGA-WE-A8ZX-06 1 179620016 179620016 G A TDRD5 Silent p.S605S 0.43 TCGA-WE-A8ZX-06 1 18809378 18809378 G A KLHDC7A Missense_Mutation p.E635K 0.28 deleterious(0) possibly_damaging(0.871) TCGA-WE-A8ZX-06 1 19443843 19443843 G A UBR4 Silent p.L3565L 0.25 TCGA-WE-A8ZX-06 1 19444354 19444354 G A UBR4 Missense_Mutation p.P3531L 0.47 probably_damaging(0.981) TCGA-WE-A8ZX-06 1 19566875 19566875 G A EMC1 Silent p.V234V 0.43 TCGA-WE-A8ZX-06 1 1961457 1961457 C T GABRD Silent p.L365L 0.38 TCGA-WE-A8ZX-06 1 200869295 200869295 C T C1orf106 Missense_Mutation p.R82C 0.33 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 1 204588221 204588221 G A LRRN2 Silent p.S300S 0.30 TCGA-WE-A8ZX-06 1 207131920 207131920 C T FCAMR Missense_Mutation p.D559N 0.35 tolerated(0.06) benign(0.167) TCGA-WE-A8ZX-06 1 207696991 207696991 G A CR1 Missense_Mutation p.G175R 0.41 tolerated(0.06) probably_damaging(1) TCGA-WE-A8ZX-06 1 21155643 21155643 G A EIF4G3 Missense_Mutation p.T1345I 0.23 tolerated(0.32) benign(0) TCGA-WE-A8ZX-06 1 215821941 215821941 G A USH2A Silent p.I4837I 0.34 TCGA-WE-A8ZX-06 1 22974361 22974361 C T C1QC 3'UTR 0.46 TCGA-WE-A8ZX-06 1 230923307 230923307 G A CAPN9 Missense_Mutation p.E520K 0.30 deleterious(0.03) benign(0.052) TCGA-WE-A8ZX-06 1 230925899 230925899 G A CAPN9 Missense_Mutation p.E541K 0.28 deleterious(0.03) benign(0.012) TCGA-WE-A8ZX-06 1 233802629 233802629 C T KCNK1 Missense_Mutation p.S215F 0.32 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZX-06 1 233802708 233802708 C T KCNK1 Silent p.F241F 0.31 TCGA-WE-A8ZX-06 1 24172120 24172120 C T FUCA1 3'UTR 0.38 TCGA-WE-A8ZX-06 1 247264378 247264378 G A ZNF669 Silent p.F231F 0.38 TCGA-WE-A8ZX-06 1 247464421 247464421 G A ZNF496 Silent p.S388S 0.25 TCGA-WE-A8ZX-06 1 247902402 247902402 C T OR14K1 Silent p.F162F 0.33 TCGA-WE-A8ZX-06 1 248039335 248039335 C T TRIM58 Silent p.I335I 0.33 TCGA-WE-A8ZX-06 1 248112520 248112520 C T OR2L8 Missense_Mutation p.R121C 0.09 deleterious(0.01) benign(0.211) TCGA-WE-A8ZX-06 1 248224344 248224344 C T OR2L3 Missense_Mutation p.R121C 0.28 deleterious(0.01) benign(0.052) TCGA-WE-A8ZX-06 1 25166413 25166413 C T CLIC4 Missense_Mutation p.P160S 0.20 deleterious(0.04) possibly_damaging(0.858) TCGA-WE-A8ZX-06 1 26658088 26658088 C T AIM1L Silent p.T528T 0.33 TCGA-WE-A8ZX-06 1 31898235 31898235 C T SERINC2 Missense_Mutation p.P160S 0.42 deleterious(0.02) probably_damaging(1) TCGA-WE-A8ZX-06 1 32740929 32740929 G A LCK Missense_Mutation p.E96K 0.24 deleterious(0) possibly_damaging(0.801) TCGA-WE-A8ZX-06 1 33990616 33990616 G A CSMD2 Missense_Mutation p.S3277F 0.25 tolerated(0.08) benign(0.012) TCGA-WE-A8ZX-06 1 33998742 33998742 G A CSMD2 Missense_Mutation p.S3216F 0.25 tolerated(0.09) possibly_damaging(0.857) TCGA-WE-A8ZX-06 1 34033323 34033323 G A CSMD2 Silent p.I2727I 0.47 TCGA-WE-A8ZX-06 1 34401477 34401477 T C CSMD2 Missense_Mutation p.D159G 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-WE-A8ZX-06 1 35334275 35334275 C T DLGAP3 Missense_Mutation p.V806M 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-WE-A8ZX-06 1 38355277 38355277 G A INPP5B Missense_Mutation p.S250L 0.47 tolerated(0.65) benign(0.073) TCGA-WE-A8ZX-06 1 39909129 39909129 C T MACF1 Silent p.F4379F 0.53 TCGA-WE-A8ZX-06 1 39950321 39950321 C T MACF1 Missense_Mutation p.H5319Y 0.19 probably_damaging(0.915) TCGA-WE-A8ZX-06 1 40775827 40775827 C T COL9A2 Missense_Mutation p.G250R 0.24 deleterious(0) probably_damaging(0.953) TCGA-WE-A8ZX-06 1 42048779 42048779 C T HIVEP3 Missense_Mutation p.D564N 0.53 possibly_damaging(0.642) TCGA-WE-A8ZX-06 1 55266738 55266738 G A TTC22 Silent p.F33F 0.21 TCGA-WE-A8ZX-06 1 57417833 57417833 C T C8B Missense_Mutation p.S185N 0.46 tolerated(1) benign(0.007) TCGA-WE-A8ZX-06 1 66378948 66378948 A G PDE4B 5'UTR 0.14 TCGA-WE-A8ZX-06 1 68915587 68915587 A C RPE65 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.244) TCGA-WE-A8ZX-06 1 75038906 75038906 C T C1orf173 Missense_Mutation p.E830K 0.21 deleterious(0.04) benign(0.167) TCGA-WE-A8ZX-06 1 75672310 75672310 G A SLC44A5 Silent p.P714P 0.41 TCGA-WE-A8ZX-06 1 77806074 77806074 G A AK5 Missense_Mutation p.D238N 0.20 tolerated(0.06) probably_damaging(1) TCGA-WE-A8ZX-06 1 78481856 78481856 A T DNAJB4 Missense_Mutation p.E313D 0.27 tolerated(0.25) benign(0.022) TCGA-WE-A8ZX-06 1 8421387 8421387 G A RERE Missense_Mutation p.S727L 0.13 possibly_damaging(0.651) TCGA-WE-A8ZX-06 1 89875940 89875940 G A GBP1P1 RNA 0.28 TCGA-WE-A8ZX-06 1 90180164 90180164 C T LRRC8C Missense_Mutation p.L679F 0.16 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 1 9075240 9075240 G A SLC2A7 Silent p.P217P 0.20 TCGA-WE-A8ZX-06 1 94643106 94643106 C T ARHGAP29 Intron 0.21 TCGA-WE-A8ZX-06 20 12989737 12989737 G A SPTLC3 5'UTR 0.45 TCGA-WE-A8ZX-06 20 13273026 13273026 G A ISM1 Missense_Mutation p.E265K 0.28 tolerated(0.09) probably_damaging(0.934) TCGA-WE-A8ZX-06 20 19664929 19664929 C T SLC24A3 Silent p.H337H 0.30 TCGA-WE-A8ZX-06 20 20051619 20051619 C T C20orf26 Missense_Mutation p.R89W 0.37 deleterious(0.04) possibly_damaging(0.711) TCGA-WE-A8ZX-06 20 21689240 21689240 G A PAX1 Missense_Mutation p.E321K 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-A8ZX-06 20 2380384 2380384 G A TGM6 Missense_Mutation p.V284I 0.41 deleterious(0.01) possibly_damaging(0.868) TCGA-WE-A8ZX-06 20 35177635 35177635 A T MYL9 Nonsense_Mutation p.K168* 0.19 TCGA-WE-A8ZX-06 20 35242766 35242766 C T SLA2 Missense_Mutation p.D203N 0.34 tolerated(0.9) benign(0.003) TCGA-WE-A8ZX-06 20 35242767 35242767 C T SLA2 Silent p.K202K 0.33 TCGA-WE-A8ZX-06 20 3687057 3687057 G A SIGLEC1 Missense_Mutation p.R116C 0.33 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 20 45130160 45130160 C T ZNF334 Silent p.G606G 0.41 TCGA-WE-A8ZX-06 20 45891063 45891063 G A ZMYND8 Silent p.S530S 0.43 TCGA-WE-A8ZX-06 20 57769452 57769452 C T ZNF831 Silent p.S1126S 0.30 TCGA-WE-A8ZX-06 20 58449053 58449053 G A SYCP2 Missense_Mutation p.S1138L 0.41 deleterious(0) probably_damaging(0.983) TCGA-WE-A8ZX-06 20 5903688 5903688 C T CHGB Missense_Mutation p.P300S 0.44 tolerated(0.38) possibly_damaging(0.834) TCGA-WE-A8ZX-06 20 61453119 61453119 G A COL9A3 Missense_Mutation p.G127E 0.58 deleterious(0) unknown(0) TCGA-WE-A8ZX-06 21 22746311 22746311 G C NCAM2 Missense_Mutation p.K391N 0.33 deleterious(0) possibly_damaging(0.86) TCGA-WE-A8ZX-06 21 28210135 28210135 A G ADAMTS1 Silent p.A889A 0.41 TCGA-WE-A8ZX-06 21 31538861 31538861 G A CLDN17 Silent p.T25T 0.41 TCGA-WE-A8ZX-06 21 31802960 31802960 C T KRTAP13-4 Missense_Mutation p.P123S 0.37 tolerated(0.29) probably_damaging(0.913) TCGA-WE-A8ZX-06 21 32537331 32537331 T G TIAM1 Missense_Mutation p.E980A 0.35 tolerated(0.46) benign(0.011) TCGA-WE-A8ZX-06 21 41414453 41414453 G A DSCAM Missense_Mutation p.S1844L 0.39 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 21 45711071 45711071 C T AIRE Missense_Mutation p.P325S 0.19 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 21 45786712 45786712 C T TRPM2 Missense_Mutation p.P167S 0.38 deleterious(0) possibly_damaging(0.901) TCGA-WE-A8ZX-06 21 46326981 46326981 G A ITGB2 Silent p.S59S 0.40 TCGA-WE-A8ZX-06 21 46596042 46596042 C T ADARB1 Silent p.F142F 0.40 TCGA-WE-A8ZX-06 22 18301636 18301636 G A MICAL3 Missense_Mutation p.P1264L 0.26 probably_damaging(0.998) TCGA-WE-A8ZX-06 22 22123378 22123378 G A MAPK1 Intron 0.22 TCGA-WE-A8ZX-06 22 22868357 22868357 G A ZNF280A Missense_Mutation p.S533F 0.17 tolerated(0.06) benign(0.396) TCGA-WE-A8ZX-06 22 22869718 22869718 G A ZNF280A Silent p.F79F 0.41 TCGA-WE-A8ZX-06 22 23040756 23040756 G A IGLV2-23 Missense_Mutation p.M68I 0.27 tolerated_low_confidence(0.31) benign(0.001) TCGA-WE-A8ZX-06 22 26165258 26165258 C T MYO18B Silent p.L459L 0.38 TCGA-WE-A8ZX-06 22 26422836 26422836 G A MYO18B Missense_Mutation p.G2299E 0.34 tolerated(0.18) possibly_damaging(0.65) TCGA-WE-A8ZX-06 22 26743695 26743695 G A SEZ6L Silent p.R741R 0.38 TCGA-WE-A8ZX-06 22 29837910 29837910 G A RFPL1 Missense_Mutation p.M251I 0.41 tolerated(0.17) benign(0.062) TCGA-WE-A8ZX-06 22 30742429 30742431 GGT AG SF3A1 Frame_Shift_Del p.D88Afs*49 0.18 TCGA-WE-A8ZX-06 22 37640167 37640167 C T RAC2 Missense_Mutation p.V8M 0.14 deleterious_low_confidence(0.01) benign(0.034) TCGA-WE-A8ZX-06 22 38245382 38245382 G A EIF3L 5'UTR 0.24 TCGA-WE-A8ZX-06 22 40161379 40161379 G A ENTHD1 Silent p.F356F 0.43 TCGA-WE-A8ZX-06 22 46631032 46631032 C T PPARA Missense_Mutation p.R388C 0.45 deleterious(0.01) probably_damaging(0.916) TCGA-WE-A8ZX-06 22 47062766 47062766 C T GRAMD4 Missense_Mutation p.P285L 0.22 tolerated(0.13) benign(0) TCGA-WE-A8ZX-06 22 47062767 47062767 C T GRAMD4 Silent p.P285P 0.22 TCGA-WE-A8ZX-06 22 50216700 50216700 G A BRD1 Silent p.S422S 0.42 TCGA-WE-A8ZX-06 22 50646891 50646891 C T SELO Intron 0.36 TCGA-WE-A8ZX-06 2 10101425 10101425 C T GRHL1 Missense_Mutation p.P177S 0.27 tolerated(0.51) benign(0.002) TCGA-WE-A8ZX-06 2 101095886 101095886 G A NMS Silent p.Q111Q 0.36 TCGA-WE-A8ZX-06 2 103274237 103274237 G A SLC9A2 Silent p.T168T 0.39 TCGA-WE-A8ZX-06 2 106497906 106497906 T A NCK2 Missense_Mutation p.F117I 0.38 tolerated(0.42) benign(0) TCGA-WE-A8ZX-06 2 108487450 108487450 C T RGPD4 Missense_Mutation p.S997L 0.42 deleterious(0.04) benign(0.008) TCGA-WE-A8ZX-06 2 108487596 108487596 G A RGPD4 Missense_Mutation p.E1046K 0.38 deleterious(0.01) probably_damaging(0.915) TCGA-WE-A8ZX-06 2 113789332 113789332 G A IL36B 5'UTR 0.38 TCGA-WE-A8ZX-06 2 113940462 113940462 C T PSD4 Silent p.S143S 0.35 TCGA-WE-A8ZX-06 2 120194653 120194653 G A TMEM37 Silent p.T70T 0.33 TCGA-WE-A8ZX-06 2 125320807 125320807 T C CNTNAP5 Missense_Mutation p.Y554H 0.31 tolerated(0.35) probably_damaging(0.996) TCGA-WE-A8ZX-06 2 137814529 137814529 G A THSD7B Missense_Mutation p.D227N 0.33 tolerated(0.45) probably_damaging(0.987) TCGA-WE-A8ZX-06 2 138400100 138400100 G A THSD7B Missense_Mutation p.G1284E 0.42 tolerated(0.3) unknown(0) TCGA-WE-A8ZX-06 2 141773482 141773482 C T LRP1B Nonsense_Mutation p.W658* 0.31 TCGA-WE-A8ZX-06 2 1488397 1488397 G A TPO Silent p.R456R 0.33 TCGA-WE-A8ZX-06 2 149806389 149806389 G A KIF5C Missense_Mutation p.E251K 0.23 deleterious(0) probably_damaging(0.93) TCGA-WE-A8ZX-06 2 152331635 152331635 A G RIF1 3'UTR 0.30 TCGA-WE-A8ZX-06 2 152522021 152522021 C T NEB Missense_Mutation p.M1688I 0.24 benign(0.12) TCGA-WE-A8ZX-06 2 158177753 158177753 G A ERMN 3'UTR 0.27 TCGA-WE-A8ZX-06 2 158272384 158272384 C T CYTIP Silent p.R295R 0.37 TCGA-WE-A8ZX-06 2 165349679 165349679 C T GRB14 Missense_Mutation p.G497D 0.23 tolerated(0.08) benign(0.434) TCGA-WE-A8ZX-06 2 166245636 166245636 G A SCN2A Missense_Mutation p.V1774I 0.32 tolerated(0.71) benign(0.254) TCGA-WE-A8ZX-06 2 166848405 166848405 C T SCN1A Missense_Mutation p.E1794K 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 2 166900402 166900402 G A SCN1A Missense_Mutation p.S607F 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-WE-A8ZX-06 2 167159651 167159651 C T SCN9A Missense_Mutation p.E284K 0.43 tolerated(0.75) benign(0.01) TCGA-WE-A8ZX-06 2 168100852 168100852 G A XIRP2 Missense_Mutation p.E984K 0.39 probably_damaging(0.999) TCGA-WE-A8ZX-06 2 171240224 171240224 C T MYO3B Missense_Mutation p.S397F 0.39 deleterious(0) probably_damaging(0.969) TCGA-WE-A8ZX-06 2 178682602 178682602 C T PDE11A Missense_Mutation p.D543N 0.29 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZX-06 2 179428118 179428118 C T TTN Missense_Mutation p.D27581N 0.46 TCGA-WE-A8ZX-06 2 179476269 179476269 G A TTN Missense_Mutation p.T16896I 0.36 TCGA-WE-A8ZX-06 2 179514890 179514890 C T TTN Splice_Site p.X13273_splice 0.29 TCGA-WE-A8ZX-06 2 179587808 179587808 C T TTN Missense_Mutation p.G7309E 0.43 TCGA-WE-A8ZX-06 2 179631140 179631140 C T TTN Missense_Mutation p.R3224K 0.28 TCGA-WE-A8ZX-06 2 179644656 179644656 G A TTN Intron 0.29 TCGA-WE-A8ZX-06 2 18112836 18112836 C T KCNS3 Silent p.I187I 0.32 TCGA-WE-A8ZX-06 2 183989092 183989092 C T NUP35 5'UTR 0.22 TCGA-WE-A8ZX-06 2 185801336 185801336 G A ZNF804A Missense_Mutation p.E405K 0.32 tolerated(0.12) probably_damaging(0.971) TCGA-WE-A8ZX-06 2 185802767 185802767 C T ZNF804A Missense_Mutation p.H882Y 0.38 tolerated(0.28) benign(0.099) TCGA-WE-A8ZX-06 2 18770805 18770805 C T NT5C1B 5'UTR 0.33 TCGA-WE-A8ZX-06 2 1914070 1914070 C T MYT1L Missense_Mutation p.E585K 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 2 21229881 21229881 C T APOB Missense_Mutation p.G3287S 0.45 benign(0.019) TCGA-WE-A8ZX-06 2 21230022 21230022 C T APOB Missense_Mutation p.D3240N 0.30 benign(0) TCGA-WE-A8ZX-06 2 21234878 21234878 G A APOB Missense_Mutation p.S1621F 0.32 possibly_damaging(0.691) TCGA-WE-A8ZX-06 2 220497160 220497160 C T SLC4A3 Silent p.A406A 0.33 TCGA-WE-A8ZX-06 2 223505621 223505621 A G FARSB Missense_Mutation p.M100T 0.26 tolerated(0.59) benign(0) TCGA-WE-A8ZX-06 2 228102716 228102716 C T COL4A3 Silent p.F40F 0.29 TCGA-WE-A8ZX-06 2 230659920 230659920 G A TRIP12 Missense_Mutation p.P1240S 0.46 tolerated(0.14) possibly_damaging(0.679) TCGA-WE-A8ZX-06 2 232262948 232262948 C T B3GNT7 Missense_Mutation p.T173I 0.49 tolerated(0.05) possibly_damaging(0.85) TCGA-WE-A8ZX-06 2 233243952 233243952 G A ALPP Missense_Mutation p.G79E 0.36 deleterious(0) probably_damaging(0.984) TCGA-WE-A8ZX-06 2 27121440 27121440 G A DPYSL5 Missense_Mutation p.E25K 0.39 tolerated(0.31) benign(0.353) TCGA-WE-A8ZX-06 2 27801506 27801506 G A C2orf16 Silent p.V689V 0.32 TCGA-WE-A8ZX-06 2 31472306 31472306 C T EHD3 Silent p.L158L 0.37 TCGA-WE-A8ZX-06 2 31562464 31562464 G C XDH Missense_Mutation p.T1222S 0.28 tolerated(0.54) possibly_damaging(0.764) TCGA-WE-A8ZX-06 2 31598311 31598311 G A XDH Missense_Mutation p.L513F 0.30 deleterious(0) possibly_damaging(0.857) TCGA-WE-A8ZX-06 2 32475465 32475465 G A NLRC4 Silent p.L490L 0.31 TCGA-WE-A8ZX-06 2 33817218 33817218 G A FAM98A Missense_Mutation p.P89L 0.38 deleterious(0) probably_damaging(0.991) TCGA-WE-A8ZX-06 2 44065780 44065780 C T ABCG5 Missense_Mutation p.M13I 0.34 tolerated_low_confidence(0.41) benign(0) TCGA-WE-A8ZX-06 2 44933451 44933451 G A CAMKMT Missense_Mutation p.G155S 0.38 deleterious(0) possibly_damaging(0.857) TCGA-WE-A8ZX-06 2 47233165 47233165 G T TTC7A Missense_Mutation p.L390F 0.30 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZX-06 2 50692633 50692633 C T NRXN1 Missense_Mutation p.G1144D 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-WE-A8ZX-06 2 50780014 50780014 G A NRXN1 Silent p.F530F 0.36 TCGA-WE-A8ZX-06 2 5833873 5833873 C T SOX11 Silent p.S340S 0.27 TCGA-WE-A8ZX-06 2 61304170 61304170 G A KIAA1841 Missense_Mutation p.D183N 0.34 deleterious(0) probably_damaging(0.986) TCGA-WE-A8ZX-06 2 69002331 69002331 G A ARHGAP25 Intron 0.40 TCGA-WE-A8ZX-06 2 69098200 69098200 G A BMP10 Silent p.T97T 0.38 TCGA-WE-A8ZX-06 2 69351757 69351757 C T ANTXR1 Silent p.I311I 0.24 TCGA-WE-A8ZX-06 2 71192113 71192113 C T ATP6V1B1 Silent p.F468F 0.35 TCGA-WE-A8ZX-06 2 8871946 8871946 C A KIDINS220 Missense_Mutation p.S1407I 0.41 deleterious_low_confidence(0.01) benign(0.288) TCGA-WE-A8ZX-06 2 89399777 89399777 G A IGKV1-16 Silent p.F17F 0.33 TCGA-WE-A8ZX-06 2 90078300 90078300 G A IGKV3D-20 Missense_Mutation p.G113S 0.33 tolerated(0.42) benign(0.007) TCGA-WE-A8ZX-06 2 9515055 9515055 C T ASAP2 Silent p.I576I 0.39 TCGA-WE-A8ZX-06 3 10417133 10417133 G A ATP2B2 Missense_Mutation p.S466L 0.53 deleterious(0.02) probably_damaging(0.997) TCGA-WE-A8ZX-06 3 10491249 10491249 G A ATP2B2 5'UTR 0.64 TCGA-WE-A8ZX-06 3 108363545 108363545 C T DZIP3 Missense_Mutation p.S559F 0.67 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-WE-A8ZX-06 3 108822756 108822756 C T MORC1 Missense_Mutation p.E55K 0.72 deleterious(0.03) possibly_damaging(0.859) TCGA-WE-A8ZX-06 3 120401006 120401006 G A HGD 5'UTR 0.56 TCGA-WE-A8ZX-06 3 124114040 124114040 C T KALRN Missense_Mutation p.S672F 0.57 deleterious(0) unknown(0) TCGA-WE-A8ZX-06 3 127379534 127379534 G A PODXL2 Silent p.R221R 0.63 TCGA-WE-A8ZX-06 3 138763066 138763066 C T PRR23C Missense_Mutation p.E133K 0.64 deleterious(0.03) probably_damaging(0.996) TCGA-WE-A8ZX-06 3 14535307 14535307 C T SLC6A6 3'Flank 0.77 TCGA-WE-A8ZX-06 3 16419544 16419544 C T RFTN1 Silent p.V169V 0.47 TCGA-WE-A8ZX-06 3 168810803 168810803 C T MECOM Missense_Mutation p.R913Q 0.67 deleterious(0.03) probably_damaging(0.913) TCGA-WE-A8ZX-06 3 172165538 172165538 G A GHSR Silent p.F222F 0.47 TCGA-WE-A8ZX-06 3 193031845 193031845 G A ATP13A5 Nonsense_Mutation p.Q766* 0.53 TCGA-WE-A8ZX-06 3 19389457 19389457 G T KCNH8 Missense_Mutation p.D271Y 0.53 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 3 194165485 194165485 G A ATP13A3 Missense_Mutation p.L510F 0.56 deleterious(0.03) benign(0.032) TCGA-WE-A8ZX-06 3 195515476 195515476 G A MUC4 Missense_Mutation p.P992L 0.85 unknown(0) TCGA-WE-A8ZX-06 3 32571818 32571818 G A DYNC1LI1 Silent p.S381S 0.65 TCGA-WE-A8ZX-06 3 36759594 36759594 G A DCLK3 Missense_Mutation p.R554C 0.59 deleterious(0.01) probably_damaging(0.992) TCGA-WE-A8ZX-06 3 36873160 36873160 C T TRANK1 Silent p.R2594R 0.65 TCGA-WE-A8ZX-06 3 37826537 37826537 G A ITGA9 Missense_Mutation p.E953K 0.39 deleterious(0.01) possibly_damaging(0.63) TCGA-WE-A8ZX-06 3 38349161 38349161 T C SLC22A14 Missense_Mutation p.F242S 0.70 deleterious(0.01) probably_damaging(0.941) TCGA-WE-A8ZX-06 3 3888400 3888400 G A LRRN1 Missense_Mutation p.S692N 0.55 tolerated(0.3) benign(0.002) TCGA-WE-A8ZX-06 3 38938465 38938465 G A SCN11A Silent p.F758F 0.57 TCGA-WE-A8ZX-06 3 46450578 46450578 A G CCRL2 Silent p.E348E 0.63 TCGA-WE-A8ZX-06 3 4725201 4725201 G A ITPR1 Missense_Mutation p.S1083N 0.66 tolerated(0.13) probably_damaging(0.985) TCGA-WE-A8ZX-06 3 49898629 49898629 C T CAMKV Silent p.G182G 0.75 TCGA-WE-A8ZX-06 3 52360886 52360886 C T DNAH1 Silent p.F239F 0.61 TCGA-WE-A8ZX-06 3 54958662 54958662 C T LRTM1 Silent p.E196E 0.65 TCGA-WE-A8ZX-06 3 55108176 55108176 C T CACNA2D3 Silent p.L1073L 0.41 TCGA-WE-A8ZX-06 3 96706332 96706332 G A EPHA6 Silent p.R203R 0.50 TCGA-WE-A8ZX-06 4 100787201 100787201 C T DAPP1 Missense_Mutation p.P233S 0.67 tolerated(0.11) possibly_damaging(0.688) TCGA-WE-A8ZX-06 4 102816461 102816461 G A BANK1 Splice_Site p.X302_splice 0.62 TCGA-WE-A8ZX-06 4 106158137 106158137 C T TET2 Missense_Mutation p.P1013L 0.40 tolerated(0.14) benign(0.002) TCGA-WE-A8ZX-06 4 120240764 120240764 C T FABP2 Missense_Mutation p.G92E 0.57 tolerated(0.1) probably_damaging(0.917) TCGA-WE-A8ZX-06 4 138442708 138442708 C T PCDH18 Silent p.Q961Q 0.51 TCGA-WE-A8ZX-06 4 151849729 151849729 T C LRBA Missense_Mutation p.N163S 0.41 tolerated(1) benign(0.005) TCGA-WE-A8ZX-06 4 158057999 158057999 C T GLRB Missense_Mutation p.P191S 0.50 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 4 16587604 16587604 G A LDB2 Nonsense_Mutation p.Q186* 0.60 TCGA-WE-A8ZX-06 4 175897155 175897155 C T ADAM29 Missense_Mutation p.S160L 0.47 tolerated(0.09) benign(0.001) TCGA-WE-A8ZX-06 4 186272737 186272737 C T SNX25 Missense_Mutation p.P650S 0.57 tolerated(0.1) probably_damaging(0.971) TCGA-WE-A8ZX-06 4 189022399 189022399 C T TRIML2 Silent p.E47E 0.48 TCGA-WE-A8ZX-06 4 26483261 26483261 C T CCKAR Silent p.%3D 0.52 TCGA-WE-A8ZX-06 4 38051410 38051410 C T TBC1D1 Missense_Mutation p.P601S 0.65 deleterious(0.03) probably_damaging(0.958) TCGA-WE-A8ZX-06 4 40438500 40438500 C T RBM47 Missense_Mutation p.E430K 0.58 deleterious(0.01) benign(0.197) TCGA-WE-A8ZX-06 4 437193 437193 G A ZNF721 Missense_Mutation p.H355Y 0.63 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZX-06 4 48037042 48037042 G A NIPAL1 Missense_Mutation p.M202I 0.52 tolerated(0.36) benign(0.006) TCGA-WE-A8ZX-06 4 7435844 7435844 C T PSAPL1 Missense_Mutation p.E255K 0.60 tolerated(0.09) possibly_damaging(0.777) TCGA-WE-A8ZX-06 4 74363380 74363380 C T AFM Silent p.F401F 0.70 TCGA-WE-A8ZX-06 4 79351470 79351470 C T FRAS1 Missense_Mutation p.A1623V 0.59 benign(0.006) TCGA-WE-A8ZX-06 4 90169765 90169765 C T GPRIN3 Silent p.T499T 0.62 TCGA-WE-A8ZX-06 5 101794186 101794186 C T SLCO6A1 Missense_Mutation p.R344Q 0.49 tolerated(0.08) benign(0.027) TCGA-WE-A8ZX-06 5 102203040 102203040 T C PAM Silent p.P51P 0.54 TCGA-WE-A8ZX-06 5 102326053 102326053 C T PAM Missense_Mutation p.P521S 0.59 tolerated(1) benign(0.012) TCGA-WE-A8ZX-06 5 109049408 109049408 C T MAN2A1 Missense_Mutation p.S108F 0.55 tolerated(0.73) benign(0.004) TCGA-WE-A8ZX-06 5 110456252 110456252 C T WDR36 Missense_Mutation p.P711S 0.41 deleterious(0) probably_damaging(0.978) TCGA-WE-A8ZX-06 5 126993319 126993319 C G CTXN3 Missense_Mutation p.L36V 0.62 deleterious(0.03) benign(0.27) TCGA-WE-A8ZX-06 5 137426725 137426725 C T WNT8A Missense_Mutation p.P340L 0.62 tolerated_low_confidence(0.28) benign(0.001) TCGA-WE-A8ZX-06 5 13865869 13865869 A C DNAH5 Missense_Mutation p.S1421R 0.52 possibly_damaging(0.46) TCGA-WE-A8ZX-06 5 140308910 140308910 G A PCDHAC1 Missense_Mutation p.M811I 0.48 tolerated(0.3) benign(0.001) TCGA-WE-A8ZX-06 5 140481610 140481610 C T PCDHB3 Silent p.F459F 0.59 TCGA-WE-A8ZX-06 5 140503621 140503621 C T PCDHB4 Nonsense_Mutation p.Q681* 0.58 TCGA-WE-A8ZX-06 5 140515573 140515573 G A PCDHB5 Missense_Mutation p.G186E 0.66 tolerated_low_confidence(0.2) benign(0.003) TCGA-WE-A8ZX-06 5 140516497 140516497 A G PCDHB5 Missense_Mutation p.N494S 0.60 deleterious_low_confidence(0.02) benign(0.002) TCGA-WE-A8ZX-06 5 140558075 140558075 C T PCDHB8 Missense_Mutation p.P154S 0.68 tolerated_low_confidence(0.14) benign(0.035) TCGA-WE-A8ZX-06 5 14488222 14488222 C T TRIO Silent p.S2495S 0.50 TCGA-WE-A8ZX-06 5 149500531 149500531 C T PDGFRB Missense_Mutation p.E836K 0.44 deleterious(0.01) possibly_damaging(0.462) TCGA-WE-A8ZX-06 5 159776707 159776707 C T C1QTNF2 Missense_Mutation p.G154D 0.77 deleterious(0) unknown(0) TCGA-WE-A8ZX-06 5 160721162 160721162 G A GABRB2 Missense_Mutation p.R489W 0.56 deleterious(0) probably_damaging(0.979) TCGA-WE-A8ZX-06 5 176003139 176003139 C T CDHR2 Missense_Mutation p.R383C 0.77 deleterious(0) possibly_damaging(0.901) TCGA-WE-A8ZX-06 5 176721293 176721293 C T NSD1 Silent p.S2308S 0.54 TCGA-WE-A8ZX-06 5 179201597 179201597 C T MAML1 Missense_Mutation p.P924S 0.76 tolerated(0.22) benign(0.008) TCGA-WE-A8ZX-06 5 179290604 179290604 G A TBC1D9B Silent p.S1199S 0.62 TCGA-WE-A8ZX-06 5 35040759 35040759 G A AGXT2 Missense_Mutation p.S33F 0.51 tolerated(0.35) benign(0) TCGA-WE-A8ZX-06 5 35740240 35740240 C T SPEF2 Silent p.F1067F 0.56 TCGA-WE-A8ZX-06 5 40945327 40945327 G A C7 Missense_Mutation p.E199K 0.80 deleterious(0.03) benign(0.32) TCGA-WE-A8ZX-06 5 40999866 40999866 C T MROH2B Missense_Mutation p.E1500K 0.57 deleterious(0.01) possibly_damaging(0.908) TCGA-WE-A8ZX-06 5 55164634 55164634 C T IL31RA Missense_Mutation p.P57L 0.56 deleterious(0) probably_damaging(0.977) TCGA-WE-A8ZX-06 5 55164698 55164698 G A IL31RA Silent p.K78K 0.59 TCGA-WE-A8ZX-06 5 63257157 63257157 G A HTR1A Silent p.I130I 0.59 TCGA-WE-A8ZX-06 5 64483947 64483947 C T ADAMTS6 Missense_Mutation p.E936K 0.56 tolerated(1) benign(0.006) TCGA-WE-A8ZX-06 5 70308441 70308441 C T NAIP Missense_Mutation p.S101N 0.60 tolerated(0.28) possibly_damaging(0.809) TCGA-WE-A8ZX-06 5 76003156 76003156 C A IQGAP2 3'UTR 0.74 TCGA-WE-A8ZX-06 5 89925240 89925240 T C GPR98 Silent p.L575L 0.53 TCGA-WE-A8ZX-06 5 89977170 89977170 G T GPR98 Missense_Mutation p.A1855S 0.60 probably_damaging(0.935) TCGA-WE-A8ZX-06 6 106555007 106555007 G A PRDM1 Silent p.G708G 0.41 TCGA-WE-A8ZX-06 6 106967031 106967031 C T AIM1 Silent p.L242L 0.28 TCGA-WE-A8ZX-06 6 117250008 117250008 C T RFX6 Missense_Mutation p.R829C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-WE-A8ZX-06 6 12125682 12125682 C T HIVEP1 Missense_Mutation p.P1885L 0.36 tolerated(0.39) benign(0.008) TCGA-WE-A8ZX-06 6 123104999 123104999 C T FABP7 3'UTR 0.43 TCGA-WE-A8ZX-06 6 125404024 125404024 C T RNF217 Missense_Mutation p.S270F 0.38 tolerated_low_confidence(0.18) possibly_damaging(0.831) TCGA-WE-A8ZX-06 6 130762608 130762608 G A TMEM200A Silent p.R347R 0.36 TCGA-WE-A8ZX-06 6 132022343 132022343 C T OR2A4 Missense_Mutation p.V67I 0.16 tolerated(1) benign(0.001) TCGA-WE-A8ZX-06 6 132030549 132030549 G A CTAGE9 Missense_Mutation p.P537S 0.48 deleterious(0.04) benign(0.097) TCGA-WE-A8ZX-06 6 147124649 147124649 G A ADGB Intron 0.38 TCGA-WE-A8ZX-06 6 147124730 147124730 C T ADGB Intron 0.45 TCGA-WE-A8ZX-06 6 152737541 152737541 G A SYNE1 Missense_Mutation p.R2011C 0.34 possibly_damaging(0.677) TCGA-WE-A8ZX-06 6 155565175 155565175 G A TIAM2 Missense_Mutation p.E1127K 0.34 tolerated(1) benign(0.015) TCGA-WE-A8ZX-06 6 159166673 159166673 G A SYTL3 Silent p.K339K 0.37 TCGA-WE-A8ZX-06 6 161007525 161007525 G A LPA Missense_Mutation p.P1362L 0.39 deleterious_low_confidence(0.01) benign(0.304) TCGA-WE-A8ZX-06 6 168479763 168479763 G A FRMD1 Silent p.P4P 0.25 TCGA-WE-A8ZX-06 6 25769392 25769392 G A SLC17A4 Missense_Mutation p.E91K 0.36 tolerated(0.6) benign(0.345) TCGA-WE-A8ZX-06 6 26251954 26251954 G A HIST1H2BH Missense_Mutation p.D26N 0.35 tolerated_low_confidence(0.05) unknown(0) TCGA-WE-A8ZX-06 6 27369007 27369007 C T ZNF391 Silent p.F286F 0.35 TCGA-WE-A8ZX-06 6 28554272 28554272 C T SCAND3 Missense_Mutation p.E75K 0.31 tolerated_low_confidence(0.17) benign(0.014) TCGA-WE-A8ZX-06 6 30899834 30899834 G A SFTA2 Missense_Mutation p.L14F 0.50 tolerated_low_confidence(0.09) unknown(0) TCGA-WE-A8ZX-06 6 31639900 31639900 C T CSNK2B-LY6G5B-1181 3'UTR 0.30 TCGA-WE-A8ZX-06 6 31752244 31752244 G A VARS Silent p.L501L 0.36 TCGA-WE-A8ZX-06 6 32948233 32948233 C T BRD2 Missense_Mutation p.P789L 0.39 tolerated(0.06) possibly_damaging(0.713) TCGA-WE-A8ZX-06 6 33400550 33400550 T G SYNGAP1 Missense_Mutation p.I159S 0.36 deleterious(0.01) benign(0.11) TCGA-WE-A8ZX-06 6 35446217 35446217 G A TEAD3 Silent p.S158S 0.25 TCGA-WE-A8ZX-06 6 35446218 35446218 G A TEAD3 Missense_Mutation p.S158F 0.25 deleterious(0.05) benign(0.005) TCGA-WE-A8ZX-06 6 35452400 35452400 G A TEAD3 Silent p.G68G 0.29 TCGA-WE-A8ZX-06 6 38561755 38561755 G A BTBD9 Silent p.F178F 0.42 TCGA-WE-A8ZX-06 6 38813482 38813482 G A DNAH8 Missense_Mutation p.E1443K 0.41 possibly_damaging(0.625) TCGA-WE-A8ZX-06 6 41035050 41035050 G A OARD1 3'UTR 0.41 TCGA-WE-A8ZX-06 6 47251727 47251727 G A TNFRSF21 Missense_Mutation p.S397F 0.35 deleterious(0) possibly_damaging(0.738) TCGA-WE-A8ZX-06 6 49667581 49667581 C T CRISP2 Silent p.T69T 0.38 TCGA-WE-A8ZX-06 6 52696640 52696640 G T GSTA5 3'UTR 0.17 TCGA-WE-A8ZX-06 6 55198719 55198719 G A GFRAL Missense_Mutation p.G98E 0.33 tolerated(0.07) possibly_damaging(0.882) TCGA-WE-A8ZX-06 6 55264058 55264058 C T GFRAL Missense_Mutation p.H345Y 0.31 deleterious(0) benign(0.195) TCGA-WE-A8ZX-06 6 56035785 56035785 G A COL21A1 Missense_Mutation p.S261L 0.26 deleterious(0.01) possibly_damaging(0.63) TCGA-WE-A8ZX-06 6 70070851 70070851 G A BAI3 Missense_Mutation p.G1229E 0.38 tolerated(1) benign(0.051) TCGA-WE-A8ZX-06 6 70070902 70070902 C T BAI3 Missense_Mutation p.S1246F 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-WE-A8ZX-06 6 70942331 70942331 C T COL9A1 Missense_Mutation p.G820S 0.28 probably_damaging(0.997) TCGA-WE-A8ZX-06 6 74062900 74062900 C T DPPA5 3'UTR 0.33 TCGA-WE-A8ZX-06 6 83728706 83728706 T C UBE3D Silent p.K332K 0.33 TCGA-WE-A8ZX-06 6 85446707 85446707 G T TBX18 Missense_Mutation p.A507D 0.29 tolerated(0.31) probably_damaging(0.994) TCGA-WE-A8ZX-06 6 86223932 86223932 G A SNX14 Missense_Mutation p.P805S 0.35 tolerated(0.08) possibly_damaging(0.521) TCGA-WE-A8ZX-06 6 90357836 90357836 G A MDN1 Missense_Mutation p.P5437L 0.29 unknown(0) TCGA-WE-A8ZX-06 6 96651085 96651085 C T FUT9 Silent p.I18I 0.38 TCGA-WE-A8ZX-06 7 100606878 100606878 C T MUC3A Intron 0.33 TCGA-WE-A8ZX-06 7 100677408 100677408 C T MUC17 Missense_Mutation p.S904L 0.47 unknown(0) TCGA-WE-A8ZX-06 7 100732661 100732661 G A TRIM56 Missense_Mutation p.G690S 0.38 tolerated(0.09) probably_damaging(0.996) TCGA-WE-A8ZX-06 7 103368578 103368578 G A RELN Missense_Mutation p.P245S 0.32 tolerated(0.13) possibly_damaging(0.702) TCGA-WE-A8ZX-06 7 105636753 105636753 C T CDHR3 Silent p.L222L 0.18 TCGA-WE-A8ZX-06 7 117003595 117003595 G A ASZ1 3'UTR 0.43 TCGA-WE-A8ZX-06 7 127235733 127235733 C T FSCN3 Missense_Mutation p.P173S 0.42 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZX-06 7 128481410 128481410 C T FLNC Missense_Mutation p.P667L 0.48 deleterious(0) probably_damaging(0.982) TCGA-WE-A8ZX-06 7 128802724 128802724 C T TSPAN33 Silent p.I113I 0.30 TCGA-WE-A8ZX-06 7 140386973 140386973 G T ADCK2 Missense_Mutation p.V497L 0.42 deleterious(0.01) benign(0.411) TCGA-WE-A8ZX-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-WE-A8ZX-06 7 142564251 142564251 C T EPHB6 Missense_Mutation p.P492L 0.33 tolerated(0.27) probably_damaging(1) TCGA-WE-A8ZX-06 7 142583360 142583360 C A TRPV6 5'UTR 0.32 TCGA-WE-A8ZX-06 7 142609903 142609903 A T TRPV5 Silent p.I511I 0.45 TCGA-WE-A8ZX-06 7 143453431 143453431 C T CTAGE6 Missense_Mutation p.E441K 0.17 deleterious(0.02) possibly_damaging(0.607) TCGA-WE-A8ZX-06 7 143657319 143657319 C T OR2F1 Missense_Mutation p.L86F 0.33 tolerated(0.05) benign(0.26) TCGA-WE-A8ZX-06 7 143747855 143747855 G A OR2A5 Missense_Mutation p.D121N 0.48 deleterious(0) probably_damaging(0.978) TCGA-WE-A8ZX-06 7 144150717 144150717 G A TPK1 Missense_Mutation p.S218F 0.42 deleterious(0) probably_damaging(0.99) TCGA-WE-A8ZX-06 7 149430351 149430351 C A KRBA1 Missense_Mutation p.P769T 0.28 tolerated(0.09) benign(0.206) TCGA-WE-A8ZX-06 7 149474919 149474919 C T ZNF467 5'Flank 0.57 TCGA-WE-A8ZX-06 7 150269936 150269936 G A GIMAP4 Missense_Mutation p.E260K 0.45 tolerated(0.07) benign(0.064) TCGA-WE-A8ZX-06 7 150390230 150390230 C T GIMAP2 Silent p.L286L 0.18 TCGA-WE-A8ZX-06 7 150721231 150721231 G A ATG9B Missense_Mutation p.P94S 0.65 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-WE-A8ZX-06 7 150730767 150730767 C T ABCB8 Silent p.L57L 0.27 TCGA-WE-A8ZX-06 7 151879233 151879233 G A KMT2C Silent p.T1904T 0.22 TCGA-WE-A8ZX-06 7 15651899 15651899 T G MEOX2 3'UTR 0.67 TCGA-WE-A8ZX-06 7 16901054 16901054 C T AGR3 Silent p.K107K 0.44 TCGA-WE-A8ZX-06 7 2284259 2284259 G A NUDT1 Missense_Mutation p.R40Q 0.30 tolerated(0.33) benign(0.107) TCGA-WE-A8ZX-06 7 23239074 23239074 C T NUPL2 Intron 0.44 TCGA-WE-A8ZX-06 7 23737861 23737861 C T FAM221A Missense_Mutation p.P230S 0.44 deleterious(0.02) benign(0.248) TCGA-WE-A8ZX-06 7 23775193 23775193 G A STK31 Missense_Mutation p.E174K 0.25 tolerated(0.42) benign(0.005) TCGA-WE-A8ZX-06 7 2977657 2977657 C T CARD11 Missense_Mutation p.E343K 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-WE-A8ZX-06 7 29915550 29915550 C T WIPF3 Silent p.I65I 0.25 TCGA-WE-A8ZX-06 7 35050100 35050100 G A DPY19L1 Silent p.F175F 0.17 TCGA-WE-A8ZX-06 7 35707060 35707060 G A HERPUD2 Missense_Mutation p.P160S 0.41 tolerated(0.08) benign(0.026) TCGA-WE-A8ZX-06 7 37903031 37903031 G A NME8 Missense_Mutation p.E141K 0.30 tolerated(0.31) benign(0.439) TCGA-WE-A8ZX-06 7 37907457 37907457 G A NME8 Missense_Mutation p.E259K 0.59 tolerated(0.46) benign(0.001) TCGA-WE-A8ZX-06 7 43360316 43360316 C T HECW1 Silent p.I145I 0.46 TCGA-WE-A8ZX-06 7 45932649 45932649 G A IGFBP1 Missense_Mutation p.G247R 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-WE-A8ZX-06 7 48081037 48081037 C T C7orf57 Silent p.N54N 0.57 TCGA-WE-A8ZX-06 7 48081038 48081038 C T C7orf57 Silent p.L55L 0.58 TCGA-WE-A8ZX-06 7 50467683 50467683 G A IKZF1 Missense_Mutation p.M264I 0.43 tolerated(0.19) benign(0.057) TCGA-WE-A8ZX-06 7 53103500 53103500 C T POM121L12 Missense_Mutation p.P46S 0.45 deleterious(0.01) probably_damaging(0.932) TCGA-WE-A8ZX-06 7 5338914 5338914 C T SLC29A4 Silent p.A355A 0.27 TCGA-WE-A8ZX-06 7 55910701 55910701 G A SEPT14 Silent p.F164F 0.30 TCGA-WE-A8ZX-06 7 6150823 6150823 C T USP42 Missense_Mutation p.P20L 0.24 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZX-06 7 70254783 70254783 C T AUTS2 Missense_Mutation p.L861F 0.55 tolerated(0.7) benign(0.193) TCGA-WE-A8ZX-06 7 72685590 72685590 C T GTF2IRD2P1 RNA 0.36 TCGA-WE-A8ZX-06 7 81598227 81598227 G A CACNA2D1 Nonsense_Mutation p.Q791* 0.48 TCGA-WE-A8ZX-06 7 82584101 82584101 C T PCLO Silent p.R2056R 0.39 TCGA-WE-A8ZX-06 7 82586143 82586143 C T PCLO Missense_Mutation p.E1376K 0.28 unknown(0) TCGA-WE-A8ZX-06 7 82997310 82997310 G A SEMA3E Silent p.L640L 0.43 TCGA-WE-A8ZX-06 7 86468158 86468158 C T GRM3 Missense_Mutation p.P443L 0.40 tolerated(0.07) probably_damaging(0.914) TCGA-WE-A8ZX-06 7 87763649 87763649 G A ADAM22 Silent p.G361G 0.34 TCGA-WE-A8ZX-06 7 94057701 94057701 C T COL1A2 Missense_Mutation p.P1208L 0.28 unknown(0) TCGA-WE-A8ZX-06 8 10466469 10466469 G A RP1L1 Silent p.T1713T 0.46 TCGA-WE-A8ZX-06 8 106573677 106573677 C T ZFPM2 Missense_Mutation p.P130S 0.32 tolerated(0.71) benign(0.001) TCGA-WE-A8ZX-06 8 110437354 110437354 G A PKHD1L1 Missense_Mutation p.G913E 0.33 tolerated(0.12) possibly_damaging(0.489) TCGA-WE-A8ZX-06 8 110471930 110471930 G A PKHD1L1 Missense_Mutation p.V2371I 0.27 tolerated(0.2) benign(0.022) TCGA-WE-A8ZX-06 8 113318235 113318235 C T CSMD3 Splice_Site p.X2691_splice 0.30 TCGA-WE-A8ZX-06 8 116599282 116599282 C T TRPS1 Silent p.Q882Q 0.35 TCGA-WE-A8ZX-06 8 119122513 119122513 G A EXT1 Missense_Mutation p.P258L 0.46 tolerated(0.12) probably_damaging(0.986) TCGA-WE-A8ZX-06 8 120940815 120940815 C T DEPTOR Missense_Mutation p.H100Y 0.20 deleterious(0) probably_damaging(1) TCGA-WE-A8ZX-06 8 121267587 121267587 C T COL14A1 Missense_Mutation p.S954F 0.31 deleterious(0) probably_damaging(0.925) TCGA-WE-A8ZX-06 8 125551344 125551344 C T TATDN1 5'Flank 0.20 TCGA-WE-A8ZX-06 8 128428587 128428587 C T POU5F1B Missense_Mutation p.T159I 0.25 deleterious(0) probably_damaging(0.979) TCGA-WE-A8ZX-06 8 131792923 131792923 C T ADCY8 Missense_Mutation p.G1157S 0.23 deleterious(0) benign(0.004) TCGA-WE-A8ZX-06 8 141297751 141297751 G A TRAPPC9 Missense_Mutation p.T744M 0.43 deleterious(0) probably_damaging(0.997) TCGA-WE-A8ZX-06 8 143957285 143957285 G A CYP11B1 Missense_Mutation p.P322S 0.26 tolerated(0.14) possibly_damaging(0.654) TCGA-WE-A8ZX-06 8 144942406 144942406 G A EPPK1 Silent p.I1672I 0.36 TCGA-WE-A8ZX-06 8 144947231 144947231 C T EPPK1 Missense_Mutation p.G64D 0.37 possibly_damaging(0.573) TCGA-WE-A8ZX-06 8 145107385 145107385 G A OPLAH Silent p.I1090I 0.38 TCGA-WE-A8ZX-06 8 17126462 17126462 C T VPS37A Missense_Mutation p.P138L 0.36 tolerated(0.11) benign(0.009) TCGA-WE-A8ZX-06 8 21766681 21766681 G A DOK2 3'UTR 0.64 TCGA-WE-A8ZX-06 8 22267622 22267622 C T SLC39A14 Silent p.I207I 0.32 TCGA-WE-A8ZX-06 8 24346825 24346825 G A ADAM7 Silent p.E415E 0.22 TCGA-WE-A8ZX-06 8 24814048 24814048 C T CTD-2168K21.2 5'Flank 0.21 TCGA-WE-A8ZX-06 8 38146245 38146245 G A WHSC1L1 Silent p.I1087I 0.22 TCGA-WE-A8ZX-06 8 39775429 39775429 C T IDO1 Silent p.F41F 0.43 TCGA-WE-A8ZX-06 8 55537822 55537822 G A RP1 Silent p.K460K 0.43 TCGA-WE-A8ZX-06 8 55539604 55539604 G A RP1 Silent p.Q1054Q 0.34 TCGA-WE-A8ZX-06 8 55540103 55540103 C T RP1 Missense_Mutation p.P1221S 0.30 tolerated(0.18) benign(0.015) TCGA-WE-A8ZX-06 8 55542424 55542424 C T RP1 Silent p.F1994F 0.19 TCGA-WE-A8ZX-06 8 68421820 68421820 G A CPA6 Missense_Mutation p.H156Y 0.47 tolerated(0.38) benign(0.008) TCGA-WE-A8ZX-06 8 77766073 77766073 C T ZFHX4 Nonsense_Mutation p.R2306* 0.24 TCGA-WE-A8ZX-06 8 82606263 82606263 G A SLC10A5 Silent p.F315F 0.53 TCGA-WE-A8ZX-06 8 86240837 86240837 G A CA1 Silent p.N246N 0.48 TCGA-WE-A8ZX-06 8 8749402 8749402 G A MFHAS1 Silent p.I389I 0.20 TCGA-WE-A8ZX-06 8 92998393 92998393 G A RUNX1T1 Missense_Mutation p.S424F 0.38 tolerated(0.22) benign(0.396) TCGA-WE-A8ZX-06 8 97299269 97299269 C T PTDSS1 Silent p.F112F 0.24 TCGA-WE-A8ZX-06 9 116132076 116132076 G A BSPRY Nonsense_Mutation p.W288* 0.62 TCGA-WE-A8ZX-06 9 117552906 117552906 G A TNFSF15 Silent p.L194L 0.53 TCGA-WE-A8ZX-06 9 125391455 125391455 C T OR1B1 Missense_Mutation p.M120I 0.57 deleterious(0) probably_damaging(0.98) TCGA-WE-A8ZX-06 9 136234315 136234315 G A SURF4 Missense_Mutation p.R19C 0.52 deleterious(0) probably_damaging(0.932) TCGA-WE-A8ZX-06 9 139756787 139756787 G A EDF1 Silent p.L132L 0.62 TCGA-WE-A8ZX-06 9 140139652 140139652 C T FAM166A Missense_Mutation p.D181N 0.54 tolerated(0.15) benign(0.059) TCGA-WE-A8ZX-06 9 18775745 18775745 C T ADAMTSL1 Missense_Mutation p.S801F 0.36 deleterious(0) probably_damaging(0.995) TCGA-WE-A8ZX-06 9 32635208 32635208 G A TAF1L Nonsense_Mutation p.Q124* 0.66 TCGA-WE-A8ZX-06 9 33798609 33798609 G A PRSS3 Missense_Mutation p.D251N 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-WE-A8ZX-06 9 35563842 35563842 C T FAM166B 5'UTR 0.80 TCGA-WE-A8ZX-06 9 38571960 38571960 C T ANKRD18A 3'UTR 0.64 TCGA-WE-A8ZX-06 9 39144252 39144252 C T CNTNAP3 Missense_Mutation p.E581K 0.56 deleterious(0) benign(0.095) TCGA-WE-A8ZX-06 9 77354723 77354723 G A TRPM6 Silent p.F1801F 0.55 TCGA-WE-A8ZX-06 9 78711018 78711018 C T PCSK5 Silent p.I369I 0.52 TCGA-WE-A8ZX-06 9 79118286 79118286 C T GCNT1 Missense_Mutation p.P330L 0.58 deleterious(0.01) probably_damaging(0.955) TCGA-WE-A8ZX-06 9 84530703 84530703 C T SPATA31D5P RNA 0.52 TCGA-WE-A8ZX-06 9 90500600 90500600 A T SPATA31E1 Missense_Mutation p.I400F 0.65 tolerated(0.06) possibly_damaging(0.815) TCGA-WE-A8ZX-06 X 100169274 100169274 C T XKRX 3'UTR 0.74 TCGA-WE-A8ZX-06 X 101095551 101095551 C T NXF5 Silent p.V206V 0.61 TCGA-WE-A8ZX-06 X 103495252 103495252 G A ESX1 Missense_Mutation p.P293L 0.73 deleterious_low_confidence(0) unknown(0) TCGA-WE-A8ZX-06 X 106845669 106845669 C T FRMPD3 Missense_Mutation p.A1500V 0.80 tolerated(0.16) benign(0.114) TCGA-WE-A8ZX-06 X 119664110 119664110 C T CUL4B Splice_Site p.X832_splice 0.72 TCGA-WE-A8ZX-06 X 122551517 122551517 G A GRIA3 Missense_Mutation p.E589K 0.77 tolerated(0.17) possibly_damaging(0.852) TCGA-WE-A8ZX-06 X 131219685 131219685 C T FRMD7 Missense_Mutation p.R190K 0.75 deleterious(0.01) probably_damaging(0.994) TCGA-WE-A8ZX-06 X 140969337 140969337 T A MAGEC3 Missense_Mutation p.F222I 0.72 deleterious(0) possibly_damaging(0.637) TCGA-WE-A8ZX-06 X 151131005 151131005 C T GABRE Nonsense_Mutation p.W151* 0.85 TCGA-WE-A8ZX-06 X 152821626 152821626 G A ATP2B3 Silent p.E726E 0.72 TCGA-WE-A8ZX-06 X 153296076 153296076 G A MECP2 Silent p.S413S 0.73 TCGA-WE-A8ZX-06 X 23933835 23933835 G A CXorf58 Missense_Mutation p.E79K 0.78 deleterious(0.01) probably_damaging(0.921) TCGA-WE-A8ZX-06 X 40450525 40450525 C T ATP6AP2 Missense_Mutation p.H70Y 0.63 deleterious(0.04) benign(0.303) TCGA-WE-A8ZX-06 X 71800915 71800915 G A PHKA1 Silent p.L1203L 0.56 TCGA-WE-A8ZX-06 X 84537318 84537318 C T POF1B Missense_Mutation p.R552K 0.78 deleterious(0.01) benign(0.021) TCGA-WE-A8ZX-06 X 86877381 86877381 G A KLHL4 Silent p.G365G 0.81 TCGA-WE-A8ZX-06 X 86880675 86880675 G A KLHL4 Missense_Mutation p.M401I 0.76 tolerated(0.41) benign(0.012) TCGA-WE-A8ZY-06 10 104465184 104465184 G A ARL3 Silent p.L22L 0.43 TCGA-WE-A8ZY-06 10 114043548 114043548 C T TECTB Missense_Mutation p.S19L 0.44 deleterious(0.01) benign(0.183) TCGA-WE-A8ZY-06 10 114059293 114059293 G A TECTB Missense_Mutation p.G293E 0.30 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 10 115534584 115534584 G A PLEKHS1 Splice_Site p.X254_splice 0.43 TCGA-WE-A8ZY-06 10 11791562 11791562 C T ECHDC3 Missense_Mutation p.H121Y 0.39 deleterious(0.02) benign(0.44) TCGA-WE-A8ZY-06 10 118236204 118236204 G A PNLIPRP3 Missense_Mutation p.D405N 0.52 deleterious(0.03) possibly_damaging(0.48) TCGA-WE-A8ZY-06 10 120916194 120916194 G A SFXN4 Silent p.F204F 0.28 TCGA-WE-A8ZY-06 10 134751115 134751115 C T TTC40 Missense_Mutation p.A201T 0.38 tolerated(0.25) possibly_damaging(0.898) TCGA-WE-A8ZY-06 10 15648342 15648342 T A ITGA8 Missense_Mutation p.E615V 0.35 deleterious(0) benign(0.102) TCGA-WE-A8ZY-06 10 27702873 27702873 C T PTCHD3 Missense_Mutation p.E103K 0.37 tolerated(0.88) possibly_damaging(0.502) TCGA-WE-A8ZY-06 10 28224006 28224006 T A ARMC4 Missense_Mutation p.N810Y 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-WE-A8ZY-06 10 31137735 31137735 G A ZNF438 Silent p.R533R 0.37 TCGA-WE-A8ZY-06 10 5227096 5227096 C T AKR1CL1 5'UTR 0.38 TCGA-WE-A8ZY-06 10 54076322 54076322 G A DKK1 Missense_Mutation p.G186S 0.37 tolerated(0.13) benign(0.411) TCGA-WE-A8ZY-06 10 69366736 69366736 G A CTNNA3 Silent p.V57V 0.45 TCGA-WE-A8ZY-06 10 78844424 78844424 C T KCNMA1 Silent p.P498P 0.53 TCGA-WE-A8ZY-06 10 88259504 88259504 T A WAPAL Missense_Mutation p.Q499L 0.25 tolerated(0.42) benign(0.086) TCGA-WE-A8ZY-06 10 89120452 89120452 G T NUTM2D Silent p.G127G 0.59 TCGA-WE-A8ZY-06 10 89120453 89120453 G A NUTM2D Missense_Mutation p.A128T 0.59 tolerated(0.2) possibly_damaging(0.796) TCGA-WE-A8ZY-06 10 91143716 91143716 G A IFIT1B Missense_Mutation p.D216N 0.42 tolerated(0.21) benign(0.047) TCGA-WE-A8ZY-06 10 95720299 95720299 C T PIPSL RNA 0.36 TCGA-WE-A8ZY-06 10 96005702 96005702 G A PLCE1 Splice_Site p.X807_splice 0.26 TCGA-WE-A8ZY-06 10 96443629 96443629 C T CYP2C18 Missense_Mutation p.S18L 0.39 tolerated(0.11) benign(0.049) TCGA-WE-A8ZY-06 10 96805647 96805647 A G CYP2C8 Missense_Mutation p.L294P 0.33 deleterious(0) probably_damaging(0.993) TCGA-WE-A8ZY-06 10 98136448 98136448 C T TLL2 Splice_Site p.X816_splice 0.36 TCGA-WE-A8ZY-06 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.78 tolerated(0.42) possibly_damaging(0.633) TCGA-WE-A8ZY-06 11 102962538 102962538 G A DCUN1D5 Missense_Mutation p.L22F 0.83 tolerated(0.7) benign(0.001) TCGA-WE-A8ZY-06 11 118081277 118081277 C T AMICA1 Missense_Mutation p.E117K 0.70 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 11 17121510 17121510 G A PIK3C2A Missense_Mutation p.P1339S 0.18 tolerated(1) benign(0.023) TCGA-WE-A8ZY-06 11 17351839 17351839 C T NUCB2 Missense_Mutation p.H390Y 0.25 deleterious(0.03) benign(0.101) TCGA-WE-A8ZY-06 11 18195095 18195095 C T MRGPRX4 Missense_Mutation p.L98F 0.20 tolerated(0.74) benign(0.03) TCGA-WE-A8ZY-06 11 22297637 22297637 C T ANO5 Intron 0.31 TCGA-WE-A8ZY-06 11 36597093 36597093 C T RAG1 Missense_Mutation p.H747Y 0.58 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-WE-A8ZY-06 11 5775923 5775923 G A OR52N4 5'UTR 0.21 TCGA-WE-A8ZY-06 11 65271690 65271690 G A MALAT1 RNA 0.69 TCGA-WE-A8ZY-06 11 67044774 67044774 G A ADRBK1 Missense_Mutation p.D49N 0.64 tolerated(0.08) benign(0.034) TCGA-WE-A8ZY-06 11 67372159 67372159 G A C11orf72 Missense_Mutation p.P128S 0.75 possibly_damaging(0.803) TCGA-WE-A8ZY-06 11 73670595 73670595 C T DNAJB13 Missense_Mutation p.P77S 0.72 tolerated(0.11) possibly_damaging(0.688) TCGA-WE-A8ZY-06 11 75442181 75442181 G A MOGAT2 Silent p.G285G 0.88 TCGA-WE-A8ZY-06 11 78383117 78383117 G A TENM4 Silent p.F1918F 0.72 TCGA-WE-A8ZY-06 12 10007041 10007041 C T CLEC2B Missense_Mutation p.G94R 0.18 deleterious(0.01) probably_damaging(1) TCGA-WE-A8ZY-06 12 104015865 104015865 T C STAB2 Silent p.L155L 0.30 TCGA-WE-A8ZY-06 12 10954380 10954380 C T TAS2R7 Missense_Mutation p.E264K 0.24 tolerated(1) probably_damaging(0.938) TCGA-WE-A8ZY-06 12 11091012 11091012 G A TAS2R14 Silent p.S265S 0.27 TCGA-WE-A8ZY-06 12 116972694 116972694 C A LINC00173 RNA 0.41 TCGA-WE-A8ZY-06 12 122656968 122656968 G A IL31 Silent p.A162A 0.48 TCGA-WE-A8ZY-06 12 125449068 125449068 C T DHX37 Silent p.G639G 0.35 TCGA-WE-A8ZY-06 12 129569194 129569194 C G TMEM132D Missense_Mutation p.K499N 0.33 deleterious(0.02) benign(0.078) TCGA-WE-A8ZY-06 12 133235919 133235919 G A POLE Silent p.I1079I 0.42 TCGA-WE-A8ZY-06 12 16516806 16516806 C T MGST1 Missense_Mutation p.P100L 0.31 tolerated(1) benign(0.001) TCGA-WE-A8ZY-06 12 21175794 21175794 G A SLCO1B7 Silent p.K117K 0.26 TCGA-WE-A8ZY-06 12 21712081 21712081 C T GYS2 Missense_Mutation p.D418N 0.25 tolerated(0.2) benign(0) TCGA-WE-A8ZY-06 12 47160432 47160432 G A SLC38A4 3'UTR 0.85 TCGA-WE-A8ZY-06 12 51092137 51092137 C T DIP2B Missense_Mutation p.P692L 0.79 tolerated(0.08) possibly_damaging(0.457) TCGA-WE-A8ZY-06 12 52682193 52682193 C T KRT81 Silent p.V229V 0.81 TCGA-WE-A8ZY-06 12 53565757 53565757 G A CSAD Silent p.I147I 0.70 TCGA-WE-A8ZY-06 12 6094813 6094813 G A VWF Missense_Mutation p.P2273S 0.33 tolerated(0.11) probably_damaging(0.96) TCGA-WE-A8ZY-06 12 63042218 63042218 G A PPM1H 3'UTR 0.74 TCGA-WE-A8ZY-06 12 6692226 6692226 C T CHD4 Missense_Mutation p.E1372K 0.23 deleterious(0.05) possibly_damaging(0.874) TCGA-WE-A8ZY-06 12 7527339 7527339 G A CD163L1 Silent p.L1036L 0.24 TCGA-WE-A8ZY-06 12 7864169 7864169 G A DPPA3 Translation_Start_Site p.M1? 0.38 deleterious(0) possibly_damaging(0.607) TCGA-WE-A8ZY-06 12 85255686 85255686 G A SLC6A15 Missense_Mutation p.R640C 0.80 deleterious(0) probably_damaging(0.943) TCGA-WE-A8ZY-06 12 9000222 9000222 C T A2ML1 Silent p.S587S 0.29 TCGA-WE-A8ZY-06 12 9305939 9305939 C T PZP Missense_Mutation p.D1259N 0.35 deleterious(0) probably_damaging(0.966) TCGA-WE-A8ZY-06 12 9305940 9305940 C T PZP Splice_Site p.X1259_splice 0.35 TCGA-WE-A8ZY-06 12 94975434 94975434 C T TMCC3 Missense_Mutation p.G320D 0.75 tolerated(0.23) possibly_damaging(0.825) TCGA-WE-A8ZY-06 13 113803244 113803244 G A F10 Missense_Mutation p.E294K 0.38 tolerated(0.43) benign(0.055) TCGA-WE-A8ZY-06 13 114005242 114005242 C A GRTP1 Silent p.T129T 0.32 TCGA-WE-A8ZY-06 13 114005259 114005259 T C GRTP1 Missense_Mutation p.K124E 0.35 tolerated(0.2) benign(0.158) TCGA-WE-A8ZY-06 13 114773051 114773051 C T RASA3 Missense_Mutation p.R567K 0.40 tolerated(1) benign(0.031) TCGA-WE-A8ZY-06 13 23911738 23911738 G A SACS Missense_Mutation p.R2093C 0.35 benign(0.003) TCGA-WE-A8ZY-06 13 46287550 46287550 C T SPERT Silent p.F130F 0.46 TCGA-WE-A8ZY-06 13 53608627 53608627 C G OLFM4 Missense_Mutation p.L117V 0.62 deleterious(0) possibly_damaging(0.507) TCGA-WE-A8ZY-06 13 76416078 76416078 G A LMO7 Silent p.E1097E 0.43 TCGA-WE-A8ZY-06 13 84455470 84455470 G A SLITRK1 Missense_Mutation p.S58F 0.41 tolerated(0.76) benign(0.127) TCGA-WE-A8ZY-06 13 99567698 99567698 G A DOCK9 Silent p.L259L 0.21 TCGA-WE-A8ZY-06 14 104565289 104565289 C T ASPG Silent p.L205L 0.64 TCGA-WE-A8ZY-06 14 20443822 20443822 C A OR4K15 Missense_Mutation p.P49T 0.75 tolerated(0.15) benign(0.066) TCGA-WE-A8ZY-06 14 21899173 21899173 G A CHD8 Silent p.P210P 0.82 TCGA-WE-A8ZY-06 14 39819363 39819363 C T CTAGE5 Silent p.F775F 0.68 TCGA-WE-A8ZY-06 14 54418852 54418852 G A BMP4 Missense_Mutation p.T30M 0.75 tolerated(0.12) possibly_damaging(0.775) TCGA-WE-A8ZY-06 14 79175824 79175824 G A NRXN3 Missense_Mutation p.D123N 0.87 tolerated(0.08) probably_damaging(0.957) TCGA-WE-A8ZY-06 14 96730769 96730769 G A BDKRB1 Silent p.A250A 0.30 TCGA-WE-A8ZY-06 15 38228648 38228648 G A TMCO5A Missense_Mutation p.E42K 0.55 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 15 42434766 42434766 G A PLA2G4F Silent p.F763F 0.20 TCGA-WE-A8ZY-06 15 42730838 42730838 G A ZNF106 Silent p.S1501S 0.60 TCGA-WE-A8ZY-06 15 43044384 43044384 G A TTBK2 Silent p.L1020L 0.18 TCGA-WE-A8ZY-06 15 43622180 43622180 C T LCMT2 Missense_Mutation p.E170K 0.29 tolerated(0.26) benign(0.068) TCGA-WE-A8ZY-06 15 54586193 54586193 G A UNC13C Missense_Mutation p.D1307N 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WE-A8ZY-06 15 81616351 81616351 G A STARD5 Silent p.C30C 0.55 TCGA-WE-A8ZY-06 15 83932172 83932172 G A BNC1 Missense_Mutation p.R611C 0.36 tolerated(0.18) benign(0.243) TCGA-WE-A8ZY-06 16 11260289 11260289 C T CLEC16A Silent p.L896L 0.17 TCGA-WE-A8ZY-06 16 16269818 16269818 C T ABCC6 Silent p.K872K 0.36 TCGA-WE-A8ZY-06 16 21172574 21172574 T A TMEM159 Missense_Mutation p.I24K 0.25 tolerated(0.14) possibly_damaging(0.756) TCGA-WE-A8ZY-06 16 21172580 21172580 C A TMEM159 Missense_Mutation p.S26Y 0.30 deleterious(0.02) possibly_damaging(0.871) TCGA-WE-A8ZY-06 16 24226007 24226007 G A PRKCB Missense_Mutation p.R631Q 0.42 tolerated(0.35) benign(0.011) TCGA-WE-A8ZY-06 16 24942183 24942183 G A ARHGAP17 Missense_Mutation p.P813S 0.31 deleterious_low_confidence(0) benign(0) TCGA-WE-A8ZY-06 16 25228626 25228626 C T AQP8 Silent p.V40V 0.23 TCGA-WE-A8ZY-06 16 4310097 4310097 G A TFAP4 Silent p.I272I 0.53 TCGA-WE-A8ZY-06 16 56691882 56691882 G A MT1F 5'UTR 0.21 TCGA-WE-A8ZY-06 16 56691883 56691883 G A MT1F 5'UTR 0.21 TCGA-WE-A8ZY-06 16 57159805 57159805 C T CPNE2 Missense_Mutation p.P321S 0.29 deleterious(0) probably_damaging(0.932) TCGA-WE-A8ZY-06 16 57159806 57159806 C T CPNE2 Missense_Mutation p.P321L 0.29 deleterious(0.02) benign(0.228) TCGA-WE-A8ZY-06 16 58750625 58750625 G A GOT2 Silent p.I265I 0.28 TCGA-WE-A8ZY-06 16 67197653 67197653 C G FBXL8 Missense_Mutation p.P352R 0.26 deleterious(0) probably_damaging(0.965) TCGA-WE-A8ZY-06 16 67686216 67686216 G T RLTPR Nonsense_Mutation p.E931* 0.20 TCGA-WE-A8ZY-06 16 70253882 70253882 G A FKSG63 5'Flank 0.20 TCGA-WE-A8ZY-06 16 70852280 70852280 G A HYDIN Silent p.L4875L 0.42 TCGA-WE-A8ZY-06 16 70884548 70884548 C T HYDIN Missense_Mutation p.D4152N 0.49 possibly_damaging(0.908) TCGA-WE-A8ZY-06 16 747000 747000 C T FBXL16 Missense_Mutation p.G136S 0.31 deleterious(0.04) benign(0.418) TCGA-WE-A8ZY-06 16 90025605 90025605 C T DEF8 Intron 0.46 TCGA-WE-A8ZY-06 16 9858090 9858090 G T GRIN2A Missense_Mutation p.T1104N 0.42 deleterious(0.04) benign(0.111) TCGA-WE-A8ZY-06 17 27893456 27893456 G A ABHD15 Missense_Mutation p.L177F 0.55 deleterious(0.01) benign(0.33) TCGA-WE-A8ZY-06 17 40725633 40725633 C T PSMC3IP Missense_Mutation p.E116K 0.71 tolerated(0.36) benign(0.014) TCGA-WE-A8ZY-06 17 42222618 42222618 T G C17orf53 Missense_Mutation p.D17E 0.45 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 17 61560861 61560861 G A ACE Missense_Mutation p.E510K 0.74 deleterious(0) probably_damaging(0.941) TCGA-WE-A8ZY-06 17 7695311 7695311 G A DNAH2 Missense_Mutation p.C2326Y 0.77 probably_damaging(0.95) TCGA-WE-A8ZY-06 18 21124492 21124492 T G NPC1 Splice_Site p.X650_splice 0.43 TCGA-WE-A8ZY-06 18 61226943 61226943 A G SERPINB12 Missense_Mutation p.I126V 0.43 tolerated(0.19) benign(0.011) TCGA-WE-A8ZY-06 18 61627476 61627476 C T HMSD Missense_Mutation p.R103C 0.70 deleterious(0) benign(0.055) TCGA-WE-A8ZY-06 18 9255455 9255455 C T ANKRD12 Silent p.I730I 0.83 TCGA-WE-A8ZY-06 19 10528517 10528517 C T PDE4A 5'Flank 0.30 TCGA-WE-A8ZY-06 19 12541167 12541167 C T ZNF443 Missense_Mutation p.E607K 0.37 tolerated(0.21) probably_damaging(0.999) TCGA-WE-A8ZY-06 19 19166717 19166717 C T ARMC6 Missense_Mutation p.P425S 0.34 tolerated(0.22) benign(0.205) TCGA-WE-A8ZY-06 19 19338702 19338702 C T NCAN Missense_Mutation p.S758F 0.32 deleterious(0.01) possibly_damaging(0.603) TCGA-WE-A8ZY-06 19 19625801 19625801 C T TSSK6 Missense_Mutation p.D146N 0.46 deleterious(0) probably_damaging(0.942) TCGA-WE-A8ZY-06 19 20308065 20308065 G A ZNF486 Silent p.L182L 0.51 TCGA-WE-A8ZY-06 19 33370224 33370224 G A CEP89 Silent p.I732I 0.36 TCGA-WE-A8ZY-06 19 36339191 36339191 C T NPHS1 Missense_Mutation p.E427K 0.27 tolerated(0.49) benign(0.201) TCGA-WE-A8ZY-06 19 36339192 36339192 C T NPHS1 Silent p.K426K 0.27 TCGA-WE-A8ZY-06 19 3734352 3734352 C T TJP3 Missense_Mutation p.S311L 0.46 deleterious(0.02) probably_damaging(0.949) TCGA-WE-A8ZY-06 19 38655436 38655436 C T SIPA1L3 Silent p.A1366A 0.50 TCGA-WE-A8ZY-06 19 40578021 40578021 G A ZNF780A 3'Flank 0.40 TCGA-WE-A8ZY-06 19 44932852 44932852 G A ZNF229 Missense_Mutation p.H702Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 19 46270362 46270362 C T SIX5 Silent p.E285E 0.50 TCGA-WE-A8ZY-06 19 47978596 47978596 G A KPTN 3'UTR 0.43 TCGA-WE-A8ZY-06 19 4930857 4930857 G A MIR4747 5'Flank 0.35 TCGA-WE-A8ZY-06 19 52272459 52272459 G A FPR2 Nonsense_Mutation p.W183* 0.37 TCGA-WE-A8ZY-06 19 52723030 52723030 C T PPP2R1A Silent p.L405L 0.49 TCGA-WE-A8ZY-06 19 53959559 53959559 C T ZNF761 RNA 0.26 TCGA-WE-A8ZY-06 19 54968952 54968952 C T LENG8 Silent p.V586V 0.14 TCGA-WE-A8ZY-06 19 55142084 55142084 G A LILRB1 Intron 0.27 TCGA-WE-A8ZY-06 19 55286614 55286614 C T KIR2DL1 Intron 0.29 TCGA-WE-A8ZY-06 19 57328864 57328864 C T PEG3 Missense_Mutation p.E316K 0.25 deleterious(0) possibly_damaging(0.849) TCGA-WE-A8ZY-06 19 59010865 59010865 G A SLC27A5 Missense_Mutation p.T554I 0.44 deleterious(0) possibly_damaging(0.891) TCGA-WE-A8ZY-06 19 831747 831747 G A AZU1 Missense_Mutation p.G209D 0.47 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 1 100159602 100159602 G A PALMD Missense_Mutation p.G547E 0.54 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 1 10228260 10228260 C T UBE4B Silent p.L1089L 0.31 TCGA-WE-A8ZY-06 1 109238710 109238710 C G PRPF38B Missense_Mutation p.L131V 0.35 deleterious(0) probably_damaging(0.954) TCGA-WE-A8ZY-06 1 111991413 111991413 G T WDR77 Silent p.L43L 0.75 TCGA-WE-A8ZY-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.46 tolerated(0.06) benign(0.006) TCGA-WE-A8ZY-06 1 117307203 117307203 G A CD2 Silent p.R237R 0.38 TCGA-WE-A8ZY-06 1 13742934 13742934 G A PRAMEF20 Missense_Mutation p.M41I 0.35 tolerated(0.09) benign(0.073) TCGA-WE-A8ZY-06 1 152329977 152329977 T G FLG2 Missense_Mutation p.K95N 0.39 unknown(0) TCGA-WE-A8ZY-06 1 153921043 153921043 A C CRTC2 Missense_Mutation p.F584L 0.35 tolerated(0.88) benign(0.013) TCGA-WE-A8ZY-06 1 155735046 155735046 C T GON4L Silent p.V1406V 0.60 TCGA-WE-A8ZY-06 1 156146613 156146613 C T SEMA4A Missense_Mutation p.A704V 0.21 tolerated(0.5) benign(0.002) TCGA-WE-A8ZY-06 1 156639256 156639256 C T NES Missense_Mutation p.R1575Q 0.37 tolerated(0.94) benign(0.011) TCGA-WE-A8ZY-06 1 158687707 158687707 A T OR6K3 Missense_Mutation p.S67T 0.43 deleterious(0) probably_damaging(0.927) TCGA-WE-A8ZY-06 1 160793519 160793519 C T LY9 Missense_Mutation p.P588L 0.47 deleterious(0.05) benign(0) TCGA-WE-A8ZY-06 1 161017455 161017455 G A ARHGAP30 3'UTR 0.53 TCGA-WE-A8ZY-06 1 162313642 162313642 C T NOS1AP Silent p.I157I 0.52 TCGA-WE-A8ZY-06 1 163122398 163122398 A G RGS5 Missense_Mutation p.M109T 0.44 deleterious(0) possibly_damaging(0.683) TCGA-WE-A8ZY-06 1 167793979 167793979 C T ADCY10 Missense_Mutation p.G1289S 0.33 tolerated(0.53) benign(0.126) TCGA-WE-A8ZY-06 1 17682583 17682583 G A PADI4 Silent p.V472V 0.60 TCGA-WE-A8ZY-06 1 182615859 182615859 C T RGS8 3'UTR 0.49 TCGA-WE-A8ZY-06 1 190068242 190068242 G A BRINP3 Missense_Mutation p.R403C 0.48 deleterious(0.03) possibly_damaging(0.642) TCGA-WE-A8ZY-06 1 193149625 193149625 T C B3GALT2 Silent p.V356V 0.52 TCGA-WE-A8ZY-06 1 193150464 193150464 T C B3GALT2 Missense_Mutation p.S77G 0.50 deleterious_low_confidence(0.01) benign(0.265) TCGA-WE-A8ZY-06 1 197160859 197160859 G A ZBTB41 Missense_Mutation p.H431Y 0.63 tolerated(0.08) possibly_damaging(0.823) TCGA-WE-A8ZY-06 1 201008836 201008836 C T CACNA1S 3'UTR 0.67 TCGA-WE-A8ZY-06 1 201379468 201379468 C T TNNI1 Silent p.P184P 0.33 TCGA-WE-A8ZY-06 1 210856581 210856581 G A KCNH1 3'UTR 0.39 TCGA-WE-A8ZY-06 1 212216402 212216402 C A DTL Missense_Mutation p.H40Q 0.42 deleterious(0.01) possibly_damaging(0.62) TCGA-WE-A8ZY-06 1 22150789 22150789 C A LDLRAD2 3'UTR 0.28 TCGA-WE-A8ZY-06 1 228210596 228210596 C T WNT3A Silent p.P100P 0.31 TCGA-WE-A8ZY-06 1 235894441 235894441 T G LYST Silent p.S2946S 0.43 TCGA-WE-A8ZY-06 1 236723126 236723126 G A HEATR1 Missense_Mutation p.T1553I 0.33 deleterious(0.04) benign(0.001) TCGA-WE-A8ZY-06 1 248039394 248039394 G T TRIM58 Missense_Mutation p.G355V 0.34 deleterious(0) benign(0.251) TCGA-WE-A8ZY-06 1 34042954 34042954 G A CSMD2 Silent p.I2508I 0.44 TCGA-WE-A8ZY-06 1 36372699 36372699 C T AGO1 Missense_Mutation p.P521S 0.49 deleterious(0) possibly_damaging(0.762) TCGA-WE-A8ZY-06 1 36372700 36372700 C T AGO1 Missense_Mutation p.P521L 0.49 deleterious(0) probably_damaging(0.963) TCGA-WE-A8ZY-06 1 3670697 3670697 G A CCDC27 Missense_Mutation p.A112T 0.21 tolerated(0.43) benign(0.116) TCGA-WE-A8ZY-06 1 74715140 74715140 C T FPGT-TNNI3K Intron 0.24 TCGA-WE-A8ZY-06 1 898586 898586 C T KLHL17 Silent p.A380A 0.50 TCGA-WE-A8ZY-06 20 24964655 24964655 G T APMAP Missense_Mutation p.S32R 0.16 tolerated(0.11) benign(0.008) TCGA-WE-A8ZY-06 20 256650 256650 G A C20orf96 Silent p.P330P 0.46 TCGA-WE-A8ZY-06 20 31611177 31611177 C T BPIFB2 Silent p.F455F 0.41 TCGA-WE-A8ZY-06 20 35517697 35517697 G A TLDC2 Missense_Mutation p.G186R 0.34 tolerated(1) benign(0.133) TCGA-WE-A8ZY-06 20 36870272 36870272 T C KIAA1755 Silent p.E87E 0.42 TCGA-WE-A8ZY-06 20 36964025 36964025 C T BPI Silent p.L458L 0.46 TCGA-WE-A8ZY-06 20 39978891 39978891 C T LPIN3 Missense_Mutation p.P319L 0.42 deleterious(0.04) benign(0.001) TCGA-WE-A8ZY-06 20 49620759 49620759 G C KCNG1 Silent p.A453A 0.32 TCGA-WE-A8ZY-06 20 60913301 60913301 G A LAMA5 Silent p.F581F 0.15 TCGA-WE-A8ZY-06 20 9371212 9371212 G A PLCB4 Missense_Mutation p.E425K 0.57 tolerated(0.35) probably_damaging(0.999) TCGA-WE-A8ZY-06 20 9416269 9416269 C A PLCB4 Missense_Mutation p.Q851K 0.30 tolerated(0.13) benign(0.445) TCGA-WE-A8ZY-06 22 17622005 17622005 G A CECR5 Silent p.L230L 0.26 TCGA-WE-A8ZY-06 22 24580770 24580770 C T SUSD2 Missense_Mutation p.S215L 0.49 tolerated(0.16) benign(0.104) TCGA-WE-A8ZY-06 22 29195070 29195070 T C XBP1 Missense_Mutation p.Q100R 0.49 tolerated(0.07) probably_damaging(0.988) TCGA-WE-A8ZY-06 22 32811964 32811964 C T BPIFC Missense_Mutation p.G447R 0.28 deleterious(0) probably_damaging(0.943) TCGA-WE-A8ZY-06 22 32841841 32841841 A C BPIFC Missense_Mutation p.S173A 0.42 tolerated(0.1) benign(0.345) TCGA-WE-A8ZY-06 22 36889807 36889807 C T FOXRED2 Silent p.R556R 0.56 TCGA-WE-A8ZY-06 22 36889808 36889808 C T FOXRED2 Missense_Mutation p.R556Q 0.59 deleterious(0.02) benign(0.109) TCGA-WE-A8ZY-06 22 40816925 40816925 G A MKL1 Silent p.F269F 0.40 TCGA-WE-A8ZY-06 22 45258295 45258295 C T PRR5-ARHGAP8 Silent p.I584I 0.42 TCGA-WE-A8ZY-06 2 101967289 101967289 C T CREG2 3'UTR 0.29 TCGA-WE-A8ZY-06 2 101967290 101967290 C T CREG2 3'UTR 0.29 TCGA-WE-A8ZY-06 2 108869818 108869818 G A SULT1C3 Missense_Mutation p.E107K 0.59 tolerated(0.9) benign(0.003) TCGA-WE-A8ZY-06 2 158272141 158272141 C T CYTIP 3'UTR 0.77 TCGA-WE-A8ZY-06 2 158395165 158395165 G A ACVR1C Missense_Mutation p.P426S 0.21 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 2 160027088 160027088 G A TANC1 Missense_Mutation p.E375K 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-WE-A8ZY-06 2 166223778 166223778 G A SCN2A Missense_Mutation p.G1191E 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-WE-A8ZY-06 2 166223779 166223779 G A SCN2A Silent p.G1191G 0.50 TCGA-WE-A8ZY-06 2 171678646 171678646 G A GAD1 Silent p.G44G 0.42 TCGA-WE-A8ZY-06 2 179495905 179495905 C T TTN Missense_Mutation p.E14624K 0.31 TCGA-WE-A8ZY-06 2 179581972 179581972 G A TTN Missense_Mutation p.R8497C 0.25 TCGA-WE-A8ZY-06 2 179605518 179605518 G A TTN Missense_Mutation p.P4148S 0.32 TCGA-WE-A8ZY-06 2 1891366 1891366 G T MYT1L Missense_Mutation p.P844T 0.54 tolerated(0.19) possibly_damaging(0.882) TCGA-WE-A8ZY-06 2 26414354 26414354 C T HADHA Missense_Mutation p.G715E 0.28 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 2 28766087 28766087 C T PLB1 Silent p.P296P 0.69 TCGA-WE-A8ZY-06 2 48873756 48873756 G A STON1-GTF2A1L Missense_Mutation p.E889K 0.19 deleterious(0.03) possibly_damaging(0.676) TCGA-WE-A8ZY-06 2 50758469 50758469 G A NRXN1 Missense_Mutation p.S788F 0.80 deleterious(0.02) probably_damaging(1) TCGA-WE-A8ZY-06 2 74135831 74135831 G A ACTG2 Missense_Mutation p.R96H 0.17 deleterious_low_confidence(0.04) benign(0.155) TCGA-WE-A8ZY-06 2 74146657 74146657 G A ACTG2 Silent p.E362E 0.16 TCGA-WE-A8ZY-06 2 8871752 8871752 G A KIDINS220 Missense_Mutation p.P1472S 0.23 tolerated_low_confidence(0.53) benign(0.015) TCGA-WE-A8ZY-06 2 89512907 89512907 G A IGKV1-27 3'Flank 0.35 TCGA-WE-A8ZY-06 2 97217738 97217738 C T ARID5A Silent p.A491A 0.56 TCGA-WE-A8ZY-06 3 111604067 111604067 G A PHLDB2 Silent p.R381R 0.39 TCGA-WE-A8ZY-06 3 119344041 119344041 C T PLA1A Silent p.F361F 0.38 TCGA-WE-A8ZY-06 3 122002812 122002812 G A CASR Missense_Mutation p.E681K 0.43 tolerated(0.23) benign(0.052) TCGA-WE-A8ZY-06 3 123427573 123427573 G A MYLK Silent p.V704V 0.33 TCGA-WE-A8ZY-06 3 142773862 142773862 C T U2SURP Missense_Mutation p.S951L 0.41 deleterious(0.05) unknown(0) TCGA-WE-A8ZY-06 3 15084179 15084179 T C NR2C2 Intron 0.33 TCGA-WE-A8ZY-06 3 15475910 15475910 C T EAF1 Missense_Mutation p.P131S 0.54 tolerated(1) benign(0.001) TCGA-WE-A8ZY-06 3 183210409 183210409 C T KLHL6 Silent p.G479G 0.58 TCGA-WE-A8ZY-06 3 183907368 183907368 C T ABCF3 Silent p.V379V 0.31 TCGA-WE-A8ZY-06 3 189526227 189526227 C T TP63 Missense_Mutation p.A164V 0.49 tolerated(0.96) probably_damaging(0.992) TCGA-WE-A8ZY-06 3 44692726 44692726 T C ZNF35 Missense_Mutation p.L56P 0.52 deleterious_low_confidence(0) benign(0.002) TCGA-WE-A8ZY-06 3 46415250 46415250 G A CCR5 Missense_Mutation p.G286E 0.60 deleterious(0) probably_damaging(0.956) TCGA-WE-A8ZY-06 3 47162082 47162082 A C SETD2 Missense_Mutation p.H1348Q 0.30 tolerated(0.19) benign(0.005) TCGA-WE-A8ZY-06 3 49200943 49200943 G C CCDC71 Missense_Mutation p.S233R 0.27 deleterious(0.02) possibly_damaging(0.838) TCGA-WE-A8ZY-06 3 50415528 50415528 C T CACNA2D2 Missense_Mutation p.E464K 0.10 deleterious(0) probably_damaging(0.98) TCGA-WE-A8ZY-06 3 51387783 51387783 G A DOCK3 Missense_Mutation p.R1356Q 0.53 deleterious(0) possibly_damaging(0.56) TCGA-WE-A8ZY-06 3 51749188 51749188 C T GRM2 Missense_Mutation p.R467C 0.44 deleterious(0.04) benign(0.416) TCGA-WE-A8ZY-06 3 54786629 54786629 C T CACNA2D3 Missense_Mutation p.R391C 0.54 deleterious(0) probably_damaging(0.998) TCGA-WE-A8ZY-06 3 58552518 58552518 G A FAM107A Intron 0.24 TCGA-WE-A8ZY-06 3 66430929 66430929 G A SLC25A26 3'Flank 0.35 TCGA-WE-A8ZY-06 3 66433744 66433744 C T LRIG1 Missense_Mutation p.G718E 0.19 deleterious(0) probably_damaging(0.97) TCGA-WE-A8ZY-06 3 77651619 77651619 C T ROBO2 Missense_Mutation p.P1054L 0.14 tolerated(0.29) possibly_damaging(0.713) TCGA-WE-A8ZY-06 3 98251804 98251804 C T GPR15 Silent p.I309I 0.53 TCGA-WE-A8ZY-06 4 100212113 100212113 C T ADH1A 5'UTR 0.58 TCGA-WE-A8ZY-06 4 147560261 147560261 C T POU4F2 5'UTR 0.32 TCGA-WE-A8ZY-06 4 151388859 151388859 A T LRBA Missense_Mutation p.L2260H 0.26 deleterious(0) possibly_damaging(0.906) TCGA-WE-A8ZY-06 4 155720398 155720398 C T RBM46 Missense_Mutation p.P362S 0.58 tolerated(0.46) benign(0) TCGA-WE-A8ZY-06 4 164393537 164393537 G A TKTL2 Silent p.F450F 0.22 TCGA-WE-A8ZY-06 4 166915642 166915642 G A TLL1 Nonsense_Mutation p.W157* 0.31 TCGA-WE-A8ZY-06 4 175565115 175565115 G A GLRA3 Missense_Mutation p.P406L 0.52 deleterious(0.05) benign(0.001) TCGA-WE-A8ZY-06 4 183960304 183960304 C T FAM92A1P2 RNA 0.50 TCGA-WE-A8ZY-06 4 20620617 20620617 G A SLIT2 Silent p.T1525T 0.31 TCGA-WE-A8ZY-06 4 40818081 40818081 A T APBB2 3'UTR 0.61 TCGA-WE-A8ZY-06 4 46067583 46067583 T - GABRG1 Frame_Shift_Del p.I114Ffs*11 0.20 TCGA-WE-A8ZY-06 4 66217200 66217200 G A EPHA5 Silent p.N805N 0.28 TCGA-WE-A8ZY-06 4 83425772 83425772 A G TMEM150C Silent p.P13P 0.68 TCGA-WE-A8ZY-06 4 84243414 84243414 T C HPSE Missense_Mutation p.T111A 0.49 tolerated(0.26) benign(0.008) TCGA-WE-A8ZY-06 4 89199590 89199590 C T PPM1K Missense_Mutation p.R49Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.898) TCGA-WE-A8ZY-06 4 89579532 89579532 G A HERC3 Intron 0.38 TCGA-WE-A8ZY-06 5 102891648 102891648 G A NUDT12 Silent p.T316T 0.49 TCGA-WE-A8ZY-06 5 140262543 140262543 C T PCDHA13 Silent p.I230I 0.71 TCGA-WE-A8ZY-06 5 148730907 148730907 T C GRPEL2 3'UTR 0.46 TCGA-WE-A8ZY-06 5 150584988 150584988 C T CCDC69 Missense_Mutation p.E33K 0.58 deleterious(0.03) probably_damaging(0.998) TCGA-WE-A8ZY-06 5 150925559 150925559 C T FAT2 Missense_Mutation p.G1710D 0.67 probably_damaging(1) TCGA-WE-A8ZY-06 5 156266 156266 G A PLEKHG4B Silent p.L407L 0.89 TCGA-WE-A8ZY-06 5 176831333 176831333 C A F12 Missense_Mutation p.Q294H 0.81 tolerated(0.13) possibly_damaging(0.868) TCGA-WE-A8ZY-06 5 31323443 31323443 G A CDH6 3'UTR 0.74 TCGA-WE-A8ZY-06 5 34925454 34925454 G C BRIX1 Missense_Mutation p.V306L 0.82 tolerated(0.06) probably_damaging(0.927) TCGA-WE-A8ZY-06 5 35694389 35694389 G A SPEF2 Splice_Site p.X634_splice 0.27 TCGA-WE-A8ZY-06 5 39393376 39393376 C A DAB2 Missense_Mutation p.D71Y 0.83 deleterious(0) probably_damaging(0.962) TCGA-WE-A8ZY-06 5 41176630 41176630 C T C6 Missense_Mutation p.G372E 0.83 deleterious(0) probably_damaging(0.996) TCGA-WE-A8ZY-06 5 54945114 54945114 G A SLC38A9 Silent p.F327F 0.38 TCGA-WE-A8ZY-06 6 111280456 111280456 G A GTF3C6 Splice_Site p.X46_splice 0.29 TCGA-WE-A8ZY-06 6 117127674 117127674 C T GPRC6A Missense_Mutation p.M398I 0.29 tolerated(0.37) benign(0.003) TCGA-WE-A8ZY-06 6 12750023 12750023 G C PHACTR1 Splice_Site p.X84_splice 0.45 TCGA-WE-A8ZY-06 6 130762555 130762555 C T TMEM200A Missense_Mutation p.P330S 0.28 tolerated(0.47) benign(0.433) TCGA-WE-A8ZY-06 6 133078621 133078622 AC - VNN2 Frame_Shift_Del p.V93Ffs*54 0.19 TCGA-WE-A8ZY-06 6 151914354 151914354 T C CCDC170 Missense_Mutation p.V469A 0.57 tolerated(0.08) possibly_damaging(0.506) TCGA-WE-A8ZY-06 6 155486490 155486490 G A TIAM2 Missense_Mutation p.G770R 0.46 deleterious(0) benign(0.41) TCGA-WE-A8ZY-06 6 167438365 167438365 C T FGFR1OP Missense_Mutation p.S301F 0.62 deleterious(0.01) benign(0.066) TCGA-WE-A8ZY-06 6 25701453 25701453 G A SCGN Missense_Mutation p.D241N 0.55 tolerated(0.06) benign(0.261) TCGA-WE-A8ZY-06 6 26234801 26234801 C T HIST1H1D Missense_Mutation p.A121T 0.56 tolerated(0.23) unknown(0) TCGA-WE-A8ZY-06 6 26234802 26234802 C T HIST1H1D Silent p.K120K 0.55 TCGA-WE-A8ZY-06 6 27925960 27925960 A G OR2B6 Silent p.%3D 0.59 TCGA-WE-A8ZY-06 6 28227746 28227746 G A NKAPL Silent p.R199R 0.50 TCGA-WE-A8ZY-06 6 31926872 31926872 G A SKIV2L 5'UTR 0.21 TCGA-WE-A8ZY-06 6 40360454 40360454 G A LRFN2 Missense_Mutation p.T533I 0.56 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 6 43273467 43273467 G A CRIP3 3'UTR 0.65 TCGA-WE-A8ZY-06 6 43273468 43273468 G A CRIP3 3'UTR 0.62 TCGA-WE-A8ZY-06 6 49660387 49660387 C T CRISP2 3'UTR 0.56 TCGA-WE-A8ZY-06 6 52103673 52103673 C T IL17F Missense_Mutation p.G37R 0.24 tolerated(0.06) possibly_damaging(0.886) TCGA-WE-A8ZY-06 6 7580380 7580380 C T DSP Silent p.T1319T 0.56 TCGA-WE-A8ZY-06 6 7583321 7583321 C T DSP Silent p.L1942L 0.70 TCGA-WE-A8ZY-06 6 76715230 76715230 T C IMPG1 Silent p.Q303Q 0.68 TCGA-WE-A8ZY-06 6 96034481 96034481 G A MANEA Missense_Mutation p.G56R 0.51 tolerated(0.49) benign(0.001) TCGA-WE-A8ZY-06 7 100320699 100320699 C T EPO Silent p.F175F 0.21 TCGA-WE-A8ZY-06 7 102575117 102575117 G A LRRC17 Missense_Mutation p.D253N 0.52 deleterious(0.04) benign(0.216) TCGA-WE-A8ZY-06 7 107204376 107204376 G A COG5 Missense_Mutation p.S20F 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-WE-A8ZY-06 7 138314867 138314867 C T SVOPL Missense_Mutation p.E264K 0.28 tolerated(0.09) benign(0.039) TCGA-WE-A8ZY-06 7 141736654 141736654 C T MGAM Missense_Mutation p.S703F 0.49 tolerated(0.07) probably_damaging(0.938) TCGA-WE-A8ZY-06 7 141762434 141762434 G A MGAM Missense_Mutation p.E1397K 0.29 deleterious(0.04) possibly_damaging(0.807) TCGA-WE-A8ZY-06 7 150027502 150027502 C T ZBED6CL Silent p.V3V 0.52 TCGA-WE-A8ZY-06 7 51097025 51097025 G A COBL Missense_Mutation p.H590Y 0.46 tolerated(1) benign(0) TCGA-WE-A8ZY-06 7 57528813 57528813 G A ZNF716 Missense_Mutation p.E216K 0.64 tolerated(0.27) benign(0.016) TCGA-WE-A8ZY-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.43 deleterious(0) possibly_damaging(0.869) TCGA-WE-A8ZY-06 7 82579001 82579001 C T PCLO Missense_Mutation p.A3635T 0.21 unknown(0) TCGA-WE-A8ZY-06 7 87774822 87774822 G A ADAM22 Silent p.K495K 0.24 TCGA-WE-A8ZY-06 8 110416793 110416793 G A PKHD1L1 Missense_Mutation p.E462K 0.22 tolerated(0.09) benign(0.168) TCGA-WE-A8ZY-06 8 116616407 116616407 G A TRPS1 Missense_Mutation p.P597S 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 8 119938740 119938740 G A TNFRSF11B Silent p.I270I 0.35 TCGA-WE-A8ZY-06 8 121326238 121326238 C T COL14A1 Missense_Mutation p.P1508L 0.39 deleterious(0) probably_damaging(1) TCGA-WE-A8ZY-06 8 133894717 133894717 T C TG Missense_Mutation p.L250S 0.31 deleterious(0) probably_damaging(0.974) TCGA-WE-A8ZY-06 8 142441222 142441222 C T PTP4A3 3'UTR 0.32 TCGA-WE-A8ZY-06 8 144680532 144680532 C A TIGD5 Silent p.A153A 0.25 TCGA-WE-A8ZY-06 8 144940648 144940648 C T EPPK1 Silent p.T2258T 0.09 TCGA-WE-A8ZY-06 8 17067464 17067464 C T ZDHHC2 Nonsense_Mutation p.R252* 0.20 TCGA-WE-A8ZY-06 8 18258461 18258461 C T NAT2 3'UTR 0.63 TCGA-WE-A8ZY-06 8 22864773 22864773 C T RHOBTB2 Silent p.L361L 0.30 TCGA-WE-A8ZY-06 8 23160868 23160868 C A LOXL2 Silent p.L641L 0.37 TCGA-WE-A8ZY-06 8 35631917 35631917 G A UNC5D Missense_Mutation p.R860Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-WE-A8ZY-06 8 43152220 43152220 G A POTEA RNA 0.24 TCGA-WE-A8ZY-06 8 43152221 43152221 G A POTEA RNA 0.25 TCGA-WE-A8ZY-06 8 6794288 6794288 G A DEFA4 Missense_Mutation p.S45F 0.29 tolerated(0.3) probably_damaging(0.993) TCGA-WE-A8ZY-06 8 73849865 73849865 G A KCNB2 Missense_Mutation p.E759K 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.61) TCGA-WE-A8ZY-06 9 130509457 130509457 G A SH2D3C Silent p.S411S 0.35 TCGA-WE-A8ZY-06 9 32543274 32543274 C - TOPORS Frame_Shift_Del p.D417Mfs*23 0.31 TCGA-WE-A8ZY-06 9 35043117 35043117 C T C9orf131 Missense_Mutation p.S164F 0.68 tolerated(0.25) benign(0.016) TCGA-WE-A8ZY-06 9 35310552 35310552 G A UNC13B Missense_Mutation p.D284N 0.84 tolerated_low_confidence(0.31) benign(0.105) TCGA-WE-A8ZY-06 9 35957475 35957475 G A OR2S2 Silent p.F207F 0.81 TCGA-WE-A8ZY-06 X 101096737 101096737 C T NXF5 Missense_Mutation p.R50Q 0.84 tolerated(0.08) benign(0.025) TCGA-WE-A8ZY-06 X 101624605 101624605 C T NXF2B Missense_Mutation p.E96K 0.33 tolerated(0.65) benign(0.002) TCGA-WE-A8ZY-06 X 107434662 107434662 C T COL4A6 Missense_Mutation p.D429N 0.89 unknown(0) TCGA-WE-A8ZY-06 X 150839623 150839623 C T PASD1 Silent p.I395I 0.91 TCGA-WE-A8ZY-06 X 151284025 151284025 C T RP11-1007I13.4 RNA 0.84 TCGA-WE-A8ZY-06 X 154507335 154507335 G A CLIC2 Missense_Mutation p.R201C 0.85 tolerated(0.09) benign(0.027) TCGA-WE-A8ZY-06 X 17819990 17819990 C T RAI2 Silent p.K47K 0.84 TCGA-WE-A8ZY-06 X 19478118 19478118 G A MAP3K15 Silent p.S291S 0.85 TCGA-WE-A8ZY-06 X 37653030 37653030 A G CYBB Silent p.E150E 0.85 TCGA-WE-A8ZY-06 X 40569274 40569274 G A MED14 Missense_Mutation p.P377L 0.75 tolerated(0.07) benign(0.075) TCGA-WE-A8ZY-06 X 48678596 48678596 G A HDAC6 Silent p.E757E 0.87 TCGA-WE-A8ZY-06 X 48678597 48678597 G A HDAC6 Missense_Mutation p.G758S 0.86 tolerated(0.17) probably_damaging(0.99) TCGA-WE-A8ZY-06 X 55650370 55650370 C T FOXR2 Missense_Mutation p.P76S 0.91 tolerated(0.06) possibly_damaging(0.555) TCGA-WE-AA9Y-06 10 128851053 128851053 C T DOCK1 Silent p.I749I 0.31 TCGA-WE-AA9Y-06 10 37506675 37506675 G A ANKRD30A Missense_Mutation p.E990K 0.15 tolerated(0.19) possibly_damaging(0.636) TCGA-WE-AA9Y-06 10 61023896 61023896 C T FAM13C Missense_Mutation p.E325K 0.09 tolerated(0.26) probably_damaging(0.999) TCGA-WE-AA9Y-06 11 124294669 124294669 C T OR8B4 Silent p.G33G 0.10 TCGA-WE-AA9Y-06 11 17141451 17141451 G A PIK3C2A Missense_Mutation p.P910S 0.12 deleterious(0) probably_damaging(1) TCGA-WE-AA9Y-06 11 20968951 20968951 C T NELL1 Missense_Mutation p.P381S 0.08 tolerated(0.14) possibly_damaging(0.76) TCGA-WE-AA9Y-06 11 34118810 34118810 C T CAPRIN1 Silent p.F656F 0.09 TCGA-WE-AA9Y-06 11 63517539 63517539 C T RTN3 Silent p.S869S 0.17 TCGA-WE-AA9Y-06 11 73748633 73748633 T A C2CD3 Missense_Mutation p.E1924V 0.15 deleterious(0) possibly_damaging(0.71) TCGA-WE-AA9Y-06 11 7981543 7981543 G A NLRP10 Missense_Mutation p.P539L 0.16 tolerated(0.14) benign(0.156) TCGA-WE-AA9Y-06 12 114793611 114793611 G A TBX5 Missense_Mutation p.A428V 0.15 tolerated(0.06) possibly_damaging(0.51) TCGA-WE-AA9Y-06 12 118198962 118198962 C T KSR2 Silent p.R280R 0.11 TCGA-WE-AA9Y-06 12 28116604 28116604 G A PTHLH Silent p.I67I 0.10 TCGA-WE-AA9Y-06 12 47182365 47182365 G A SLC38A4 Silent p.F52F 0.14 TCGA-WE-AA9Y-06 12 75692482 75692482 A C CAPS2 Silent p.L362L 0.15 TCGA-WE-AA9Y-06 13 72053343 72053343 C T DACH1 Missense_Mutation p.E612K 0.12 probably_damaging(0.97) TCGA-WE-AA9Y-06 13 97484744 97484744 G A HS6ST3 Silent p.R236R 0.12 TCGA-WE-AA9Y-06 14 59112875 59112875 A G DACT1 Missense_Mutation p.K512E 0.09 tolerated(0.22) probably_damaging(0.997) TCGA-WE-AA9Y-06 14 65417570 65417570 C A RAB15 Intron 0.16 TCGA-WE-AA9Y-06 14 71199964 71199964 C A MAP3K9 Missense_Mutation p.D722Y 0.18 deleterious(0.01) probably_damaging(0.931) TCGA-WE-AA9Y-06 16 70291959 70291959 A G AARS Silent p.T718T 0.10 TCGA-WE-AA9Y-06 16 72984381 72984381 A T ZFHX3 Missense_Mutation p.L1068Q 0.16 probably_damaging(0.997) TCGA-WE-AA9Y-06 16 77398096 77398096 C T ADAMTS18 Missense_Mutation p.V321I 0.15 tolerated(0.55) possibly_damaging(0.524) TCGA-WE-AA9Y-06 16 9857957 9857957 C T GRIN2A Silent p.P1148P 0.14 TCGA-WE-AA9Y-06 17 10427155 10427155 G A MYH2 Missense_Mutation p.S1741F 0.19 deleterious(0.02) benign(0.166) TCGA-WE-AA9Y-06 17 43045326 43045326 C T C1QL1 Missense_Mutation p.V31M 0.30 deleterious(0) benign(0.069) TCGA-WE-AA9Y-06 17 43045327 43045327 C T C1QL1 Missense_Mutation p.M30I 0.30 deleterious(0) benign(0.002) TCGA-WE-AA9Y-06 17 5462470 5462470 G A NLRP1 Silent p.L516L 0.16 TCGA-WE-AA9Y-06 17 65052175 65052175 G A CACNG1 Missense_Mutation p.V153I 0.20 tolerated(0.66) benign(0.056) TCGA-WE-AA9Y-06 18 2585167 2585167 G A NDC80 Missense_Mutation p.G212E 0.12 tolerated(0.06) benign(0.039) TCGA-WE-AA9Y-06 18 48241490 48241490 C T MAPK4 Silent p.S196S 0.13 TCGA-WE-AA9Y-06 18 52896214 52896214 G A TCF4 Silent p.V683V 0.15 TCGA-WE-AA9Y-06 19 17611563 17611563 G A SLC27A1 Missense_Mutation p.R505Q 0.16 deleterious(0.01) benign(0.117) TCGA-WE-AA9Y-06 19 19231611 19231611 G A TMEM161A Silent p.I383I 0.17 TCGA-WE-AA9Y-06 19 40993747 40993747 G T SPTBN4 Nonsense_Mutation p.E105* 0.08 TCGA-WE-AA9Y-06 19 40993749 40993749 G A SPTBN4 Silent p.E105E 0.08 TCGA-WE-AA9Y-06 19 50333460 50333460 C T MED25 Silent p.V268V 0.23 TCGA-WE-AA9Y-06 19 5641607 5641607 C T SAFB Missense_Mutation p.R93C 0.17 deleterious(0.02) probably_damaging(0.962) TCGA-WE-AA9Y-06 19 6459655 6459655 G A SLC25A23 5'UTR 0.75 TCGA-WE-AA9Y-06 19 6459656 6459656 G A SLC25A23 5'UTR 0.75 TCGA-WE-AA9Y-06 1 151743618 151743618 C T OAZ3 Missense_Mutation p.P166S 0.15 deleterious(0) probably_damaging(0.992) TCGA-WE-AA9Y-06 1 156262956 156262956 G A C1orf85 Missense_Mutation p.S367F 0.10 deleterious(0) probably_damaging(0.935) TCGA-WE-AA9Y-06 1 158607893 158607893 C T SPTA1 Missense_Mutation p.E1707K 0.07 tolerated(0.68) benign(0.06) TCGA-WE-AA9Y-06 1 158815434 158815434 G A MNDA Missense_Mutation p.D210N 0.16 tolerated(0.24) benign(0.078) TCGA-WE-AA9Y-06 1 159284369 159284369 G A OR10J3 Silent p.V27V 0.06 TCGA-WE-AA9Y-06 1 165173144 165173144 G A LMX1A Silent p.S374S 0.06 TCGA-WE-AA9Y-06 1 179603735 179603735 C A TDRD5 Missense_Mutation p.P424T 0.13 tolerated(0.33) possibly_damaging(0.886) TCGA-WE-AA9Y-06 1 179603736 179603736 C T TDRD5 Missense_Mutation p.P424L 0.12 tolerated(0.73) benign(0.106) TCGA-WE-AA9Y-06 1 185956576 185956576 T G HMCN1 Missense_Mutation p.I983S 0.20 probably_damaging(0.99) TCGA-WE-AA9Y-06 1 201287838 201287838 T G PKP1 Missense_Mutation p.F383V 0.11 deleterious(0) possibly_damaging(0.495) TCGA-WE-AA9Y-06 1 206230811 206230811 C T AVPR1B Missense_Mutation p.S315F 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AA9Y-06 1 21771621 21771621 C T NBPF3 Silent p.L14L 0.14 TCGA-WE-AA9Y-06 1 231361257 231361257 C T C1orf131 Missense_Mutation p.D236N 0.15 deleterious(0.05) probably_damaging(0.968) TCGA-WE-AA9Y-06 1 37270545 37270545 C T GRIK3 Intron 0.16 TCGA-WE-AA9Y-06 1 38187347 38187347 C T EPHA10 Missense_Mutation p.G711S 0.21 deleterious(0) probably_damaging(1) TCGA-WE-AA9Y-06 20 42338644 42338644 C T MYBL2 Missense_Mutation p.P516L 0.11 deleterious(0.04) probably_damaging(1) TCGA-WE-AA9Y-06 20 49209056 49209056 G A FAM65C Missense_Mutation p.A797V 0.18 deleterious(0.04) benign(0.008) TCGA-WE-AA9Y-06 20 9560911 9560911 C T PAK7 Missense_Mutation p.G291R 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-WE-AA9Y-06 21 35890265 35890265 G A RCAN1 3'UTR 0.12 TCGA-WE-AA9Y-06 21 41455888 41455888 G A DSCAM Missense_Mutation p.S1393F 0.12 deleterious(0) probably_damaging(0.953) TCGA-WE-AA9Y-06 22 24122832 24122832 C T MMP11 Silent p.F182F 0.17 TCGA-WE-AA9Y-06 22 32793998 32793998 G A RTCB Silent p.I248I 0.12 TCGA-WE-AA9Y-06 22 35661247 35661247 C T HMGXB4 Missense_Mutation p.P289L 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-WE-AA9Y-06 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.14 tolerated(0.11) benign(0.012) TCGA-WE-AA9Y-06 2 228855813 228855813 T C SPHKAP Missense_Mutation p.D1621G 0.06 deleterious(0) possibly_damaging(0.895) TCGA-WE-AA9Y-06 2 228881794 228881794 G A SPHKAP Missense_Mutation p.S1259F 0.14 deleterious(0) probably_damaging(0.999) TCGA-WE-AA9Y-06 2 71766288 71766288 G A DYSF Missense_Mutation p.D499N 0.15 deleterious(0) probably_damaging(0.971) TCGA-WE-AA9Y-06 3 100373970 100373970 G A GPR128 Silent p.R557R 0.17 TCGA-WE-AA9Y-06 3 112548166 112548166 C T CD200R1L Missense_Mutation p.G38S 0.15 tolerated(0.61) benign(0.114) TCGA-WE-AA9Y-06 3 122060509 122060509 C T CSTA 3'UTR 0.19 TCGA-WE-AA9Y-06 3 137843504 137843504 C T A4GNT Missense_Mutation p.E209K 0.07 tolerated(0.11) benign(0.085) TCGA-WE-AA9Y-06 3 15471419 15471419 G A EAF1 Splice_Site p.X35_splice 0.14 TCGA-WE-AA9Y-06 3 49114340 49114340 C T QRICH1 Silent p.K37K 0.04 TCGA-WE-AA9Y-06 3 9055475 9055475 G A SRGAP3 Missense_Mutation p.T622I 0.07 tolerated(0.05) possibly_damaging(0.72) TCGA-WE-AA9Y-06 3 97983485 97983485 C T OR5H6 Silent p.S119S 0.17 TCGA-WE-AA9Y-06 4 10445916 10445916 C T ZNF518B Silent p.P679P 0.09 TCGA-WE-AA9Y-06 4 119953122 119953122 A G SYNPO2 Silent p.S1064S 0.13 TCGA-WE-AA9Y-06 4 39310529 39310529 A G RFC1 Silent p.L538L 0.10 TCGA-WE-AA9Y-06 5 145379820 145379820 G A SH3RF2 Missense_Mutation p.R193K 0.11 tolerated(0.7) probably_damaging(0.992) TCGA-WE-AA9Y-06 5 54786839 54786839 G A PPAP2A Silent p.T54T 0.09 TCGA-WE-AA9Y-06 5 78350159 78350159 G A DMGDH Missense_Mutation p.H130Y 0.12 deleterious(0) probably_damaging(0.983) TCGA-WE-AA9Y-06 5 94030905 94030905 C A ANKRD32 Missense_Mutation p.P1022Q 0.12 deleterious(0) probably_damaging(1) TCGA-WE-AA9Y-06 5 95757603 95757603 C T PCSK1 Missense_Mutation p.D201N 0.11 tolerated(0.08) probably_damaging(0.997) TCGA-WE-AA9Y-06 6 107011757 107011757 G A AIM1 Missense_Mutation p.R1678K 0.09 tolerated(0.19) possibly_damaging(0.676) TCGA-WE-AA9Y-06 6 117248372 117248372 C A RFX6 Missense_Mutation p.P690T 0.16 tolerated_low_confidence(0.08) benign(0.283) TCGA-WE-AA9Y-06 6 117248373 117248373 C T RFX6 Missense_Mutation p.P690L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.48) TCGA-WE-AA9Y-06 6 117662320 117662320 C T ROS1 Missense_Mutation p.R1686K 0.11 tolerated(0.49) benign(0.013) TCGA-WE-AA9Y-06 6 31122285 31122285 C A CCHCR1 Silent p.L263L 0.12 TCGA-WE-AA9Y-06 6 45296070 45296070 C T RUNX2 5'Flank 0.18 TCGA-WE-AA9Y-06 6 74078946 74078946 C T OOEP Missense_Mutation p.R118Q 0.08 tolerated(0.13) benign(0.009) TCGA-WE-AA9Y-06 7 100344260 100344260 C T ZAN Missense_Mutation p.S289F 0.15 probably_damaging(0.999) TCGA-WE-AA9Y-06 7 100867047 100867047 C T ZNHIT1 Missense_Mutation p.P123S 0.08 tolerated(0.39) probably_damaging(0.981) TCGA-WE-AA9Y-06 7 103290805 103290805 G A RELN Missense_Mutation p.P640S 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-WE-AA9Y-06 7 121755267 121755267 A T AASS Missense_Mutation p.Y302N 0.23 deleterious(0) probably_damaging(0.918) TCGA-WE-AA9Y-06 7 121755268 121755268 G A AASS Silent p.P301P 0.25 TCGA-WE-AA9Y-06 7 141537008 141537008 C T PRSS37 Silent p.V157V 0.14 TCGA-WE-AA9Y-06 7 23825096 23825096 G A STK31 Splice_Site p.X717_splice 0.29 TCGA-WE-AA9Y-06 7 75054471 75054471 A G POM121C Silent p.D218D 0.07 TCGA-WE-AA9Y-06 7 99631466 99631466 C T ZKSCAN1 Silent p.S446S 0.20 TCGA-WE-AA9Y-06 8 104709363 104709363 G A RIMS2 Missense_Mutation p.G76R 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-AA9Y-06 8 27296837 27296837 C T PTK2B Missense_Mutation p.R586C 0.16 deleterious(0) probably_damaging(0.979) TCGA-WE-AA9Y-06 X 105159735 105159735 C T NRK Missense_Mutation p.S789F 0.19 deleterious(0.02) possibly_damaging(0.66) TCGA-WE-AA9Y-06 X 151128125 151128125 G A GABRE Intron 0.39 TCGA-WE-AA9Y-06 X 41198321 41198321 C T DDX3X Nonsense_Mutation p.R46* 0.29 TCGA-WE-AAA0-06 10 100177351 100177351 G A HPS1 Silent p.L691L 0.42 TCGA-WE-AAA0-06 10 100195424 100195424 C T HPS1 Missense_Mutation p.E75K 0.27 deleterious(0.01) possibly_damaging(0.681) TCGA-WE-AAA0-06 10 101715116 101715116 C T DNMBP Silent p.L705L 0.21 TCGA-WE-AAA0-06 10 103340099 103340099 C T POLL Silent p.A423A 0.26 TCGA-WE-AAA0-06 10 103987514 103987514 G A ELOVL3 Missense_Mutation p.S78N 0.31 deleterious(0) probably_damaging(0.983) TCGA-WE-AAA0-06 10 104158035 104158035 C T NFKB2 Missense_Mutation p.P278L 0.29 deleterious(0) possibly_damaging(0.468) TCGA-WE-AAA0-06 10 104184139 104184139 G A CUEDC2 Missense_Mutation p.P98L 0.28 tolerated(0.06) possibly_damaging(0.735) TCGA-WE-AAA0-06 10 104184140 104184140 G A CUEDC2 Missense_Mutation p.P98S 0.29 deleterious(0.02) benign(0.444) TCGA-WE-AAA0-06 10 104414454 104414454 G A TRIM8 Silent p.Q205Q 0.30 TCGA-WE-AAA0-06 10 105349970 105349970 C T NEURL1 Silent p.T522T 0.25 TCGA-WE-AAA0-06 10 105889932 105889932 T A WDR96 Nonsense_Mutation p.R1655* 0.32 TCGA-WE-AAA0-06 10 106124613 106124613 G A CCDC147 Missense_Mutation p.R188Q 0.25 tolerated(0.3) benign(0.003) TCGA-WE-AAA0-06 10 106130780 106130780 C T CCDC147 Missense_Mutation p.T353I 0.46 tolerated(0.17) benign(0.013) TCGA-WE-AAA0-06 10 114200449 114200449 G A ZDHHC6 Missense_Mutation p.S175F 0.34 tolerated(0.65) benign(0.012) TCGA-WE-AAA0-06 10 115534005 115534005 C T PLEKHS1 Missense_Mutation p.S225F 0.26 deleterious(0) probably_damaging(0.976) TCGA-WE-AAA0-06 10 115610148 115610148 G A DCLRE1A Missense_Mutation p.P239L 0.25 tolerated(0.19) benign(0.074) TCGA-WE-AAA0-06 10 115610149 115610149 G A DCLRE1A Missense_Mutation p.P239S 0.23 tolerated(0.06) benign(0.031) TCGA-WE-AAA0-06 10 115971717 115971717 C T TDRD1 Missense_Mutation p.L585F 0.28 deleterious(0) probably_damaging(0.934) TCGA-WE-AAA0-06 10 118084493 118084493 G A CCDC172 5'UTR 0.33 TCGA-WE-AAA0-06 10 11894115 11894115 G A PROSER2 Missense_Mutation p.M13I 0.21 deleterious(0) possibly_damaging(0.758) TCGA-WE-AAA0-06 10 118969396 118969396 G A KCNK18 Missense_Mutation p.M247I 0.18 tolerated(0.68) benign(0.002) TCGA-WE-AAA0-06 10 119003493 119003493 C T SLC18A2 Missense_Mutation p.P45S 0.25 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 10 123241658 123241658 C T FGFR2 Intron 0.29 TCGA-WE-AAA0-06 10 123842261 123842261 G A TACC2 Silent p.K82K 0.33 TCGA-WE-AAA0-06 10 124380582 124380582 C T DMBT1 Missense_Mutation p.S1636F 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-WE-AAA0-06 10 124380608 124380608 G A DMBT1 Missense_Mutation p.G1645R 0.30 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 10 124391383 124391383 C T DMBT1 Missense_Mutation p.S1991L 0.30 tolerated(0.06) benign(0.254) TCGA-WE-AAA0-06 10 124457871 124457871 T C C10orf120 Missense_Mutation p.H129R 0.30 tolerated(0.34) benign(0.013) TCGA-WE-AAA0-06 10 124797260 124797260 C T ACADSB Intron 0.24 TCGA-WE-AAA0-06 10 125521553 125521553 C T CPXM2 Missense_Mutation p.E538K 0.26 tolerated(0.06) benign(0.446) TCGA-WE-AAA0-06 10 125557583 125557583 C T CPXM2 Missense_Mutation p.M266I 0.30 tolerated(0.16) benign(0.003) TCGA-WE-AAA0-06 10 125622146 125622146 C T CPXM2 Missense_Mutation p.G166E 0.20 deleterious(0) probably_damaging(0.979) TCGA-WE-AAA0-06 10 127504783 127504783 G A UROS Missense_Mutation p.S37L 0.29 deleterious(0) probably_damaging(0.935) TCGA-WE-AAA0-06 10 132965093 132965093 G A TCERG1L Silent p.A304A 0.12 TCGA-WE-AAA0-06 10 133787406 133787406 C T BNIP3 Missense_Mutation p.G30S 0.30 tolerated(1) benign(0.001) TCGA-WE-AAA0-06 10 134179038 134179038 C T LRRC27 Missense_Mutation p.A467V 0.39 tolerated(0.23) benign(0.028) TCGA-WE-AAA0-06 10 134179039 134179039 C T LRRC27 Silent p.A467A 0.37 TCGA-WE-AAA0-06 10 134886626 134886626 C T GPR123 Silent p.G220G 0.45 TCGA-WE-AAA0-06 10 135076468 135076468 G A ADAM8 3'UTR 0.39 TCGA-WE-AAA0-06 10 15255564 15255564 C T FAM171A1 Missense_Mutation p.D675N 0.24 deleterious(0) possibly_damaging(0.877) TCGA-WE-AAA0-06 10 21139397 21139397 C T NEBL Missense_Mutation p.G348E 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 10 26465653 26465653 T A MYO3A Nonsense_Mutation p.Y1439* 0.22 TCGA-WE-AAA0-06 10 28196687 28196687 C A ARMC4 Nonsense_Mutation p.G839* 0.36 TCGA-WE-AAA0-06 10 28276312 28276312 C T ARMC4 Intron 0.28 TCGA-WE-AAA0-06 10 28276440 28276440 T G ARMC4 Missense_Mutation p.K86T 0.29 deleterious(0.04) benign(0.15) TCGA-WE-AAA0-06 10 30306838 30306838 C T KIAA1462 Missense_Mutation p.D1352N 0.12 deleterious(0.02) probably_damaging(0.984) TCGA-WE-AAA0-06 10 30336715 30336715 G A KIAA1462 Silent p.I9I 0.19 TCGA-WE-AAA0-06 10 31810589 31810589 G A ZEB1 Missense_Mutation p.E777K 0.24 deleterious(0.04) possibly_damaging(0.593) TCGA-WE-AAA0-06 10 48390079 48390079 G A RBP3 Missense_Mutation p.R267W 0.50 deleterious(0) probably_damaging(0.932) TCGA-WE-AAA0-06 10 50122272 50122272 G A LRRC18 5'UTR 0.10 TCGA-WE-AAA0-06 10 5149783 5149783 C T AKR1C3 3'UTR 0.20 TCGA-WE-AAA0-06 10 52005215 52005215 C T ASAH2 Splice_Site p.X43_splice 0.38 TCGA-WE-AAA0-06 10 55569124 55569124 G A PCDH15 Silent p.I496I 0.32 TCGA-WE-AAA0-06 10 55581763 55581763 A G PCDH15 Missense_Mutation p.L1910P 0.26 tolerated_low_confidence(0.14) unknown(0) TCGA-WE-AAA0-06 10 55581764 55581764 G A PCDH15 Silent p.L1910L 0.25 TCGA-WE-AAA0-06 10 55582144 55582144 G A PCDH15 Missense_Mutation p.P1783L 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-WE-AAA0-06 10 5955735 5955735 C T FBXO18 Silent p.L464L 0.31 TCGA-WE-AAA0-06 10 61833096 61833096 G A ANK3 Missense_Mutation p.L2515F 0.28 benign(0.366) TCGA-WE-AAA0-06 10 68686833 68686833 G A LRRTM3 Silent p.Q53Q 0.28 TCGA-WE-AAA0-06 10 69926239 69926239 C T MYPN Missense_Mutation p.R597C 0.44 deleterious(0) probably_damaging(0.961) TCGA-WE-AAA0-06 10 70986994 70986994 C T HKDC1 Missense_Mutation p.S32F 0.34 deleterious(0) probably_damaging(0.986) TCGA-WE-AAA0-06 10 73468897 73468897 C T C10orf105 3'Flank 0.30 TCGA-WE-AAA0-06 10 75198094 75198094 G T PPP3CB Missense_Mutation p.P495H 0.31 deleterious(0) probably_damaging(0.947) TCGA-WE-AAA0-06 10 7618929 7618929 C T ITIH5 Missense_Mutation p.D489N 0.22 tolerated(0.42) benign(0.069) TCGA-WE-AAA0-06 10 76789623 76789623 G A KAT6B Missense_Mutation p.E1681K 0.43 probably_damaging(0.991) TCGA-WE-AAA0-06 10 7763687 7763687 G A ITIH2 Missense_Mutation p.E272K 0.30 tolerated(0.06) benign(0.071) TCGA-WE-AAA0-06 10 82331326 82331326 G A SH2D4B Missense_Mutation p.E163K 0.23 tolerated(0.23) benign(0.202) TCGA-WE-AAA0-06 10 90356597 90356597 C T LIPJ Silent p.F209F 0.23 TCGA-WE-AAA0-06 10 94214243 94214243 G A IDE Silent p.P1006P 0.20 TCGA-WE-AAA0-06 10 94214244 94214244 G A IDE Missense_Mutation p.P1006L 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 10 94410269 94410269 T A KIF11 Missense_Mutation p.F1012I 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 10 96707657 96707657 G A CYP2C9 Silent p.L201L 0.33 TCGA-WE-AAA0-06 10 96745850 96745850 C T CYP2C9 Missense_Mutation p.P404S 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-WE-AAA0-06 10 96829107 96829107 G A CYP2C8 Missense_Mutation p.S18L 0.31 tolerated(0.26) benign(0.049) TCGA-WE-AAA0-06 10 97114702 97114702 A G SORBS1 Silent p.F717F 0.32 TCGA-WE-AAA0-06 10 98743944 98743944 C T C10orf12 Missense_Mutation p.P933S 0.28 tolerated(0.18) probably_damaging(0.986) TCGA-WE-AAA0-06 10 98803160 98803160 C T SLIT1 Missense_Mutation p.G655E 0.32 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 10 99126844 99126844 G A RRP12 Missense_Mutation p.R1001C 0.20 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 10 99968541 99968541 T G R3HCC1L Missense_Mutation p.F224V 0.37 tolerated(0.21) benign(0.056) TCGA-WE-AAA0-06 11 1008096 1008096 C T AP2A2 Missense_Mutation p.S794F 0.25 deleterious(0.02) possibly_damaging(0.667) TCGA-WE-AAA0-06 11 1024080 1024080 C T MUC6 Silent p.E1083E 0.32 TCGA-WE-AAA0-06 11 102662129 102662129 G A MMP1 Silent p.I377I 0.38 TCGA-WE-AAA0-06 11 10785004 10785004 C T CTR9 Silent p.A292A 0.31 TCGA-WE-AAA0-06 11 1088823 1088823 C T MUC2 Missense_Mutation p.P1203L 0.26 benign(0.188) TCGA-WE-AAA0-06 11 1098687 1098687 G A MUC2 Missense_Mutation p.D2353N 0.24 unknown(0) TCGA-WE-AAA0-06 11 1099791 1099791 G A MUC2 Missense_Mutation p.R2463K 0.20 unknown(0) TCGA-WE-AAA0-06 11 117321394 117321394 G A DSCAML1 Silent p.P1253P 0.48 TCGA-WE-AAA0-06 11 118209855 118209855 C T CD3D 3'UTR 0.46 TCGA-WE-AAA0-06 11 118498085 118498085 C T PHLDB1 Silent p.A182A 0.47 TCGA-WE-AAA0-06 11 118769328 118769328 A G BCL9L Silent p.N1432N 0.44 TCGA-WE-AAA0-06 11 119024853 119024853 G A ABCG4 Missense_Mutation p.R119K 0.38 tolerated(0.97) benign(0.015) TCGA-WE-AAA0-06 11 119243981 119243981 G A USP2 Silent p.S70S 0.54 TCGA-WE-AAA0-06 11 11941739 11941739 C T USP47 Silent p.L268L 0.33 TCGA-WE-AAA0-06 11 119991346 119991346 G A TRIM29 Missense_Mutation p.S488L 0.47 tolerated(0.77) benign(0.013) TCGA-WE-AAA0-06 11 1213370 1213370 G A MUC5AC RNA 0.04 TCGA-WE-AAA0-06 11 121437781 121437781 C T SORL1 Missense_Mutation p.P1061L 0.27 deleterious(0) possibly_damaging(0.842) TCGA-WE-AAA0-06 11 123753985 123753985 C T TMEM225 Missense_Mutation p.E180K 0.34 tolerated(0.38) benign(0.012) TCGA-WE-AAA0-06 11 123848000 123848000 G A OR10S1 Silent p.A133A 0.32 TCGA-WE-AAA0-06 11 124412886 124412886 G A OR8B12 Missense_Mutation p.S222F 0.50 tolerated_low_confidence(0.05) benign(0.072) TCGA-WE-AAA0-06 11 124626230 124626230 G A ESAM Silent p.L160L 0.54 TCGA-WE-AAA0-06 11 125322262 125322262 G A FEZ1 Missense_Mutation p.P355L 0.44 tolerated(0.06) benign(0.004) TCGA-WE-AAA0-06 11 1265983 1265983 G A MUC5B Missense_Mutation p.G2625R 0.30 unknown(0) TCGA-WE-AAA0-06 11 1266633 1266633 C T MUC5B Silent p.A2841A 0.24 TCGA-WE-AAA0-06 11 130068431 130068431 C T ST14 Silent p.S533S 0.44 TCGA-WE-AAA0-06 11 134181006 134181006 C T GLB1L3 Missense_Mutation p.P410L 0.37 tolerated(0.12) benign(0.023) TCGA-WE-AAA0-06 11 15260478 15260478 C T INSC Silent p.I464I 0.40 TCGA-WE-AAA0-06 11 17414507 17414507 G A ABCC8 3'UTR 0.21 TCGA-WE-AAA0-06 11 17794238 17794238 C T KCNC1 Intron 0.44 TCGA-WE-AAA0-06 11 18158863 18158863 C T MRGPRX3 Silent p.S38S 0.30 TCGA-WE-AAA0-06 11 19076945 19076945 G A MRGPRX2 3'UTR 0.27 TCGA-WE-AAA0-06 11 19251349 19251349 G A E2F8 Silent p.A515A 0.27 TCGA-WE-AAA0-06 11 20129277 20129277 G C NAV2 Missense_Mutation p.W2362C 0.28 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 11 2356734 2356734 G A CD81-AS1 Intron 0.24 TCGA-WE-AAA0-06 11 26538464 26538464 A C ANO3 Missense_Mutation p.M228L 0.18 tolerated(0.31) benign(0.033) TCGA-WE-AAA0-06 11 26587441 26587441 A T MUC15 Missense_Mutation p.S16T 0.21 tolerated_low_confidence(0.51) benign(0.021) TCGA-WE-AAA0-06 11 27077142 27077142 G A BBOX1 Silent p.V55V 0.38 TCGA-WE-AAA0-06 11 30034239 30034239 G A KCNA4 5'UTR 0.32 TCGA-WE-AAA0-06 11 33564873 33564873 G T KIAA1549L Missense_Mutation p.E291D 0.18 tolerated_low_confidence(0.08) benign(0.006) TCGA-WE-AAA0-06 11 36595730 36595730 C T RAG1 Silent p.S292S 0.22 TCGA-WE-AAA0-06 11 3723994 3723994 G A NUP98 Missense_Mutation p.P1071S 0.26 tolerated(0.3) benign(0.108) TCGA-WE-AAA0-06 11 3793152 3793152 G A NUP98 Missense_Mutation p.R204C 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 11 4510224 4510224 C T OR52K1 Missense_Mutation p.P32S 0.28 deleterious(0.01) benign(0.356) TCGA-WE-AAA0-06 11 4510225 4510225 C T OR52K1 Missense_Mutation p.P32L 0.29 deleterious(0.02) probably_damaging(0.928) TCGA-WE-AAA0-06 11 46333948 46333948 C T CREB3L1 Missense_Mutation p.P276S 0.28 deleterious(0.03) probably_damaging(0.962) TCGA-WE-AAA0-06 11 46333949 46333949 C T CREB3L1 Missense_Mutation p.P276L 0.28 deleterious(0) probably_damaging(0.965) TCGA-WE-AAA0-06 11 4673766 4673766 G A OR51E1 Missense_Mutation p.D4N 0.35 tolerated(0.51) benign(0.029) TCGA-WE-AAA0-06 11 4673940 4673940 A G OR51E1 Missense_Mutation p.M62V 0.25 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 11 46908022 46908022 C T LRP4 Missense_Mutation p.E760K 0.21 tolerated(0.63) benign(0.028) TCGA-WE-AAA0-06 11 47736188 47736188 C T AGBL2 Silent p.L5L 0.24 TCGA-WE-AAA0-06 11 47746238 47746238 G A FNBP4 Missense_Mutation p.P701S 0.25 tolerated(0.08) possibly_damaging(0.622) TCGA-WE-AAA0-06 11 4791145 4791145 C T OR51F1 Translation_Start_Site p.M1? 0.31 deleterious(0.02) benign(0.009) TCGA-WE-AAA0-06 11 48328315 48328315 C T OR4S1 Missense_Mutation p.P181S 0.32 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 11 48346753 48346753 C T OR4C3 Silent p.F87F 0.10 TCGA-WE-AAA0-06 11 51515383 51515383 C T OR4C46 Silent p.I34I 0.25 TCGA-WE-AAA0-06 11 5364333 5364333 T G OR51B5 Missense_Mutation p.K141T 0.26 deleterious(0) benign(0.248) TCGA-WE-AAA0-06 11 5462718 5462718 G A OR51I1 Silent p.F9F 0.22 TCGA-WE-AAA0-06 11 5529629 5529629 G A UBQLN3 Missense_Mutation p.S387F 0.27 tolerated(0.06) benign(0.021) TCGA-WE-AAA0-06 11 55406107 55406107 T C OR4P4 Missense_Mutation p.Y92H 0.28 deleterious(0) possibly_damaging(0.873) TCGA-WE-AAA0-06 11 55655605 55655605 G A TRIM51 Missense_Mutation p.R202Q 0.21 tolerated(0.57) benign(0.001) TCGA-WE-AAA0-06 11 55735269 55735269 C T OR10AG1 Missense_Mutation p.G224E 0.20 deleterious(0) possibly_damaging(0.851) TCGA-WE-AAA0-06 11 55761452 55761452 G T OR5F1 Missense_Mutation p.S217Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 11 55861193 55861193 C T OR8I2 Missense_Mutation p.S137F 0.24 deleterious(0) possibly_damaging(0.903) TCGA-WE-AAA0-06 11 55890154 55890154 C T OR8H3 Silent p.F102F 0.25 TCGA-WE-AAA0-06 11 56085826 56085826 C T OR8K3 Missense_Mutation p.T15M 0.15 tolerated_low_confidence(1) benign(0.004) TCGA-WE-AAA0-06 11 56086224 56086224 C T OR8K3 Missense_Mutation p.P148S 0.34 tolerated_low_confidence(0.09) benign(0.083) TCGA-WE-AAA0-06 11 56757090 56757090 G A OR5AK2 Silent p.R234R 0.29 TCGA-WE-AAA0-06 11 57087694 57087694 C T TNKS1BP1 Missense_Mutation p.R196Q 0.22 deleterious(0.01) possibly_damaging(0.72) TCGA-WE-AAA0-06 11 5719624 5719624 G A TRIM22 Missense_Mutation p.R200K 0.37 tolerated(0.65) benign(0.004) TCGA-WE-AAA0-06 11 57327859 57327859 A C UBE2L6 Missense_Mutation p.L25R 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 11 5758007 5758007 C T OR56B1 Silent p.I87I 0.29 TCGA-WE-AAA0-06 11 57995670 57995670 G A OR10Q1 Silent p.I226I 0.28 TCGA-WE-AAA0-06 11 5841574 5841574 G A OR52N2 Silent p.G3G 0.21 TCGA-WE-AAA0-06 11 5862717 5862717 G A OR52E6 Silent p.I137I 0.25 TCGA-WE-AAA0-06 11 59807882 59807882 C T OOSP2 5'UTR 0.32 TCGA-WE-AAA0-06 11 61560071 61560071 G A TMEM258 5'UTR 0.20 TCGA-WE-AAA0-06 11 61897926 61897926 C T INCENP Silent p.A309A 0.35 TCGA-WE-AAA0-06 11 61897927 61897927 C T INCENP Missense_Mutation p.P310S 0.35 tolerated(0.07) unknown(0) TCGA-WE-AAA0-06 11 62338578 62338578 G A EEF1G Silent p.A127A 0.28 TCGA-WE-AAA0-06 11 6243792 6243792 G A FAM160A2 Silent p.F357F 0.15 TCGA-WE-AAA0-06 11 62591760 62591760 C T STX5 Splice_Site p.X263_splice 0.24 TCGA-WE-AAA0-06 11 63078506 63078506 A T SLC22A10 Nonstop_Mutation p.*542Yext*2 0.25 TCGA-WE-AAA0-06 11 63884270 63884270 A G FLRT1 Silent p.K177K 0.33 TCGA-WE-AAA0-06 11 64570081 64570081 C T MAP4K2 Missense_Mutation p.E67K 0.18 deleterious(0.03) benign(0.26) TCGA-WE-AAA0-06 11 64707168 64707168 C T C11orf85 Silent p.R206R 0.16 TCGA-WE-AAA0-06 11 64803007 64803007 C T SNX15 Missense_Mutation p.S179F 0.26 tolerated(0.32) probably_damaging(0.949) TCGA-WE-AAA0-06 11 65271256 65271256 G A MALAT1 RNA 0.28 TCGA-WE-AAA0-06 11 65319608 65319608 G A LTBP3 Missense_Mutation p.P456S 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 11 65396095 65396095 C T PCNXL3 Silent p.F1244F 0.26 TCGA-WE-AAA0-06 11 65987249 65987249 C T PACS1 Silent p.L337L 0.22 TCGA-WE-AAA0-06 11 65987250 65987250 C T PACS1 Silent p.L338L 0.22 TCGA-WE-AAA0-06 11 66192143 66192143 C T NPAS4 Silent p.L594L 0.29 TCGA-WE-AAA0-06 11 6647838 6647838 G A DCHS1 Silent p.T2103T 0.37 TCGA-WE-AAA0-06 11 67020940 67020940 C T KDM2A Silent p.L983L 0.29 TCGA-WE-AAA0-06 11 6953800 6953800 C T ZNF215 Silent p.I99I 0.25 TCGA-WE-AAA0-06 11 70031761 70031761 C T ANO1 Missense_Mutation p.A885V 0.13 tolerated(0.24) possibly_damaging(0.688) TCGA-WE-AAA0-06 11 7023967 7023967 C T ZNF214 Missense_Mutation p.E34K 0.29 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 11 70331957 70331957 C T SHANK2 Missense_Mutation p.E1482K 0.27 deleterious(0.01) benign(0.292) TCGA-WE-AAA0-06 11 70331966 70331966 G A SHANK2 Missense_Mutation p.P1479S 0.29 deleterious(0.03) possibly_damaging(0.641) TCGA-WE-AAA0-06 11 71184706 71184706 G T NADSYN1 Missense_Mutation p.D214Y 0.22 deleterious(0) probably_damaging(0.954) TCGA-WE-AAA0-06 11 71510604 71510604 C T FAM86C1 Intron 0.27 TCGA-WE-AAA0-06 11 72004489 72004489 G A CLPB Silent p.I682I 0.42 TCGA-WE-AAA0-06 11 73625498 73625498 G A PAAF1 Silent p.L256L 0.35 TCGA-WE-AAA0-06 11 73768556 73768556 G A C2CD3 Missense_Mutation p.P1662L 0.24 deleterious(0.05) possibly_damaging(0.878) TCGA-WE-AAA0-06 11 74907638 74907638 G A SLCO2B1 Missense_Mutation p.D505N 0.25 deleterious(0.04) possibly_damaging(0.834) TCGA-WE-AAA0-06 11 76371923 76371923 C T LRRC32 Silent p.Q238Q 0.28 TCGA-WE-AAA0-06 11 78380618 78380618 C T TENM4 Missense_Mutation p.D2258N 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-WE-AAA0-06 11 78467954 78467954 G A TENM4 Silent p.V884V 0.25 TCGA-WE-AAA0-06 11 78468035 78468035 G A TENM4 Silent p.C857C 0.48 TCGA-WE-AAA0-06 11 7981217 7981217 C T NLRP10 Missense_Mutation p.E648K 0.26 tolerated(0.23) benign(0.011) TCGA-WE-AAA0-06 11 85445395 85445395 G A SYTL2 Missense_Mutation p.S325F 0.28 deleterious(0.03) benign(0.361) TCGA-WE-AAA0-06 11 88780804 88780804 G A GRM5 Silent p.I79I 0.36 TCGA-WE-AAA0-06 11 89531644 89531644 G A TRIM49 Missense_Mutation p.S338L 0.45 deleterious(0.04) possibly_damaging(0.719) TCGA-WE-AAA0-06 11 89774676 89774676 C T TRIM49C Silent p.F439F 0.18 TCGA-WE-AAA0-06 11 92533487 92533487 G A FAT3 Silent p.G2436G 0.44 TCGA-WE-AAA0-06 11 92534020 92534020 G A FAT3 Missense_Mutation p.G2614E 0.24 benign(0.085) TCGA-WE-AAA0-06 11 93797654 93797654 C T HEPHL1 Silent p.F262F 0.38 TCGA-WE-AAA0-06 11 99932014 99932014 C T CNTN5 Nonsense_Mutation p.Q351* 0.32 TCGA-WE-AAA0-06 12 100550825 100550825 C T AC010203.1 3'Flank 0.54 TCGA-WE-AAA0-06 12 100904661 100904661 C T NR1H4 Missense_Mutation p.S72F 0.56 deleterious(0) benign(0.395) TCGA-WE-AAA0-06 12 103237530 103237530 G A PAH Missense_Mutation p.L365F 0.38 tolerated(0.18) benign(0.005) TCGA-WE-AAA0-06 12 104118771 104118771 G A STAB2 Missense_Mutation p.E1568K 0.24 tolerated(0.57) benign(0.007) TCGA-WE-AAA0-06 12 104376655 104376655 G A TDG Missense_Mutation p.G186D 0.12 deleterious(0.01) possibly_damaging(0.88) TCGA-WE-AAA0-06 12 104380771 104380771 C T TDG Missense_Mutation p.P379L 0.16 deleterious_low_confidence(0) benign(0.271) TCGA-WE-AAA0-06 12 106799751 106799751 C T POLR3B Silent p.V321V 0.22 TCGA-WE-AAA0-06 12 10783811 10783811 A T STYK1 Missense_Mutation p.F95Y 0.24 tolerated(0.12) benign(0.263) TCGA-WE-AAA0-06 12 109306300 109306300 C T SVOP 3'UTR 0.30 TCGA-WE-AAA0-06 12 109968458 109968458 C T UBE3B Silent p.L973L 0.29 TCGA-WE-AAA0-06 12 111744796 111744796 C T CUX2 Silent p.I310I 0.52 TCGA-WE-AAA0-06 12 112183988 112183988 C T ACAD10 Missense_Mutation p.P750L 0.43 deleterious(0.02) probably_damaging(0.987) TCGA-WE-AAA0-06 12 113357285 113357285 C T OAS1 Intron 0.68 TCGA-WE-AAA0-06 12 113834978 113834978 C T SDS Silent p.K215K 0.45 TCGA-WE-AAA0-06 12 11420859 11420859 G A PRB3 Silent p.N108N 0.28 TCGA-WE-AAA0-06 12 117158197 117158197 G A C12orf49 Silent p.V108V 0.57 TCGA-WE-AAA0-06 12 117271704 117271704 C T RNFT2 Silent p.Y330Y 0.40 TCGA-WE-AAA0-06 12 117685172 117685172 C T NOS1 Nonsense_Mutation p.W969* 0.48 TCGA-WE-AAA0-06 12 120509438 120509438 C T CCDC64 Nonsense_Mutation p.Q308* 0.58 TCGA-WE-AAA0-06 12 120586035 120586035 G A GCN1L1 Silent p.V1554V 0.23 TCGA-WE-AAA0-06 12 121746273 121746273 G A ANAPC5 3'UTR 0.20 TCGA-WE-AAA0-06 12 121947669 121947669 G A KDM2B Missense_Mutation p.P450S 0.62 tolerated(0.72) benign(0.005) TCGA-WE-AAA0-06 12 121970780 121970780 G A KDM2B Silent p.L288L 0.31 TCGA-WE-AAA0-06 12 122669219 122669219 A T LRRC43 Missense_Mutation p.N102Y 0.30 deleterious(0) possibly_damaging(0.731) TCGA-WE-AAA0-06 12 12334194 12334194 G A LRP6 Missense_Mutation p.R386C 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-WE-AAA0-06 12 12334195 12334195 G A LRP6 Silent p.R385R 0.41 TCGA-WE-AAA0-06 12 125834599 125834599 C T TMEM132B Silent p.F218F 0.33 TCGA-WE-AAA0-06 12 130935822 130935822 G A RIMBP2 Missense_Mutation p.P124L 0.58 deleterious(0.02) benign(0.044) TCGA-WE-AAA0-06 12 13715621 13715621 G A GRIN2B 3'UTR 0.33 TCGA-WE-AAA0-06 12 14018867 14018867 C T GRIN2B Silent p.R92R 0.31 TCGA-WE-AAA0-06 12 14822671 14822671 C T GUCY2C Missense_Mutation p.D423N 0.25 deleterious(0.02) benign(0.259) TCGA-WE-AAA0-06 12 15070196 15070196 G A ERP27 Silent p.L164L 0.17 TCGA-WE-AAA0-06 12 18446933 18446933 G A PIK3C2G Missense_Mutation p.E340K 0.43 deleterious(0) probably_damaging(0.981) TCGA-WE-AAA0-06 12 18524126 18524126 C T PIK3C2G Silent p.P546P 0.27 TCGA-WE-AAA0-06 12 18747452 18747452 C T PIK3C2G Missense_Mutation p.L1305F 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-WE-AAA0-06 12 18891407 18891407 C T CAPZA3 Missense_Mutation p.P69S 0.27 tolerated(0.8) benign(0.006) TCGA-WE-AAA0-06 12 20870107 20870107 T G SLCO1C1 Missense_Mutation p.F240V 0.37 deleterious(0) probably_damaging(0.945) TCGA-WE-AAA0-06 12 20905394 20905394 G A SLCO1C1 Missense_Mutation p.G725E 0.16 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-WE-AAA0-06 12 21428335 21428335 G A SLCO1A2 Missense_Mutation p.S545F 0.09 deleterious(0) probably_damaging(0.992) TCGA-WE-AAA0-06 12 21454199 21454199 A G SLCO1A2 Silent p.L198L 0.30 TCGA-WE-AAA0-06 12 21727215 21727215 C T GYS2 Missense_Mutation p.E181K 0.26 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 12 21995275 21995275 A G ABCC9 Missense_Mutation p.I1149T 0.10 deleterious(0) possibly_damaging(0.875) TCGA-WE-AAA0-06 12 21995276 21995276 T G ABCC9 Missense_Mutation p.I1149L 0.13 tolerated(0.32) benign(0.044) TCGA-WE-AAA0-06 12 22078891 22078891 G A ABCC9 Missense_Mutation p.P131S 0.18 deleterious(0.02) probably_damaging(0.909) TCGA-WE-AAA0-06 12 2613673 2613673 C T CACNA1C Intron 0.37 TCGA-WE-AAA0-06 12 26835520 26835520 G A ITPR2 Missense_Mutation p.P412L 0.21 deleterious(0) probably_damaging(0.993) TCGA-WE-AAA0-06 12 27829441 27829441 C T PPFIBP1 Silent p.N514N 0.26 TCGA-WE-AAA0-06 12 27829460 27829460 G A PPFIBP1 Missense_Mutation p.V521I 0.33 tolerated(0.06) benign(0.017) TCGA-WE-AAA0-06 12 27835567 27835567 C T PPFIBP1 Silent p.G732G 0.33 TCGA-WE-AAA0-06 12 2906432 2906432 C T FKBP4 Silent p.S78S 0.36 TCGA-WE-AAA0-06 12 2930474 2930474 C T ITFG2 Missense_Mutation p.R248C 0.35 deleterious(0) probably_damaging(0.953) TCGA-WE-AAA0-06 12 352966 352966 G A SLC6A13 Silent p.I72I 0.29 TCGA-WE-AAA0-06 12 40114841 40114841 G A C12orf40 Missense_Mutation p.D583N 0.32 tolerated(1) benign(0) TCGA-WE-AAA0-06 12 42491381 42491381 G A GXYLT1 Nonsense_Mutation p.R342* 0.26 TCGA-WE-AAA0-06 12 42864122 42864122 G A PRICKLE1 Missense_Mutation p.P58S 0.64 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 12 43822486 43822486 C T ADAMTS20 Nonsense_Mutation p.W1202* 0.62 TCGA-WE-AAA0-06 12 44165165 44165165 C T IRAK4 Missense_Mutation p.P102S 0.46 tolerated(0.1) probably_damaging(0.97) TCGA-WE-AAA0-06 12 4874637 4874637 G A GALNT8 Silent p.K562K 0.23 TCGA-WE-AAA0-06 12 49994511 49994511 G A FAM186B Silent p.Y304Y 0.55 TCGA-WE-AAA0-06 12 50188793 50188793 G A NCKAP5L Silent p.L950L 0.52 TCGA-WE-AAA0-06 12 52795129 52795129 C T KRT82 Missense_Mutation p.E209K 0.66 deleterious(0) possibly_damaging(0.67) TCGA-WE-AAA0-06 12 52887034 52887034 G A KRT6A 5'UTR 0.32 TCGA-WE-AAA0-06 12 52913856 52913856 G A KRT5 Silent p.S75S 0.22 TCGA-WE-AAA0-06 12 52960810 52960810 C T KRT74 Silent p.K511K 0.54 TCGA-WE-AAA0-06 12 53218003 53218003 G A KRT79 Silent p.A333A 0.34 TCGA-WE-AAA0-06 12 53452522 53452522 C T TENC1 Missense_Mutation p.S449L 0.62 deleterious(0) benign(0.207) TCGA-WE-AAA0-06 12 53459587 53459587 G A SPRYD3 3'UTR 0.30 TCGA-WE-AAA0-06 12 54405114 54405114 A T HOXC8 Silent p.G226G 0.73 TCGA-WE-AAA0-06 12 54447692 54447692 C T HOXC4 5'UTR 0.24 TCGA-WE-AAA0-06 12 54756744 54756744 C T GPR84 Missense_Mutation p.A298T 0.31 tolerated(0.58) benign(0.002) TCGA-WE-AAA0-06 12 54975809 54975809 G A PPP1R1A Silent p.I118I 0.56 TCGA-WE-AAA0-06 12 55039413 55039413 C A DCD Missense_Mutation p.R59M 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.702) TCGA-WE-AAA0-06 12 55688255 55688255 G A OR6C6 Silent p.I254I 0.16 TCGA-WE-AAA0-06 12 55688621 55688621 G A OR6C6 Silent p.I132I 0.59 TCGA-WE-AAA0-06 12 55945720 55945720 C T OR6C4 Missense_Mutation p.S237F 0.63 deleterious_low_confidence(0) benign(0.007) TCGA-WE-AAA0-06 12 57112560 57112560 G A NACA Intron 0.60 TCGA-WE-AAA0-06 12 57114423 57114423 G A NACA Silent p.T297T 0.53 TCGA-WE-AAA0-06 12 57181048 57181048 C T HSD17B6 Silent p.I292I 0.55 TCGA-WE-AAA0-06 12 58145437 58145437 T G CDK4 Missense_Mutation p.K22Q 0.56 deleterious(0) probably_damaging(0.988) TCGA-WE-AAA0-06 12 60169171 60169171 C T SLC16A7 Silent p.L365L 0.61 TCGA-WE-AAA0-06 12 63543818 63543818 G A AVPR1A Nonsense_Mutation p.Q267* 0.28 TCGA-WE-AAA0-06 12 63976266 63976266 G A DPY19L2 Missense_Mutation p.L549F 0.56 deleterious(0) probably_damaging(0.926) TCGA-WE-AAA0-06 12 63976267 63976267 G A DPY19L2 Silent p.A548A 0.53 TCGA-WE-AAA0-06 12 63976268 63976268 G A DPY19L2 Missense_Mutation p.A548V 0.53 tolerated(0.8) benign(0.006) TCGA-WE-AAA0-06 12 6438991 6438991 G A TNFRSF1A Missense_Mutation p.P337L 0.33 tolerated(0.26) benign(0.006) TCGA-WE-AAA0-06 12 65564607 65564607 C T LEMD3 Missense_Mutation p.P411S 0.46 tolerated(0.41) benign(0.002) TCGA-WE-AAA0-06 12 6788259 6788259 G A ZNF384 Silent p.L53L 0.28 TCGA-WE-AAA0-06 12 68553323 68553323 C T IFNG Missense_Mutation p.D25N 0.32 tolerated(0.29) benign(0.025) TCGA-WE-AAA0-06 12 70178500 70178500 G A RAB3IP Missense_Mutation p.E187K 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-WE-AAA0-06 12 70206656 70206656 G A RAB3IP Missense_Mutation p.R426K 0.23 deleterious(0.01) benign(0.134) TCGA-WE-AAA0-06 12 70988447 70988447 G A PTPRB Missense_Mutation p.S439F 0.27 tolerated(0.1) probably_damaging(0.955) TCGA-WE-AAA0-06 12 71016328 71016328 G A PTPRB Missense_Mutation p.L184F 0.19 tolerated_low_confidence(0.3) benign(0.005) TCGA-WE-AAA0-06 12 72004482 72004482 C T ZFC3H1 Nonsense_Mutation p.W1942* 0.34 TCGA-WE-AAA0-06 12 72956681 72956681 C T TRHDE Nonsense_Mutation p.Q590* 0.24 TCGA-WE-AAA0-06 12 73015526 73015526 G A TRHDE Silent p.R845R 0.43 TCGA-WE-AAA0-06 12 7640261 7640261 C T CD163 Missense_Mutation p.E582K 0.36 deleterious(0) possibly_damaging(0.611) TCGA-WE-AAA0-06 12 78582400 78582400 C T NAV3 Silent p.F1944F 0.34 TCGA-WE-AAA0-06 12 7947115 7947115 G A NANOG Silent p.P159P 0.12 TCGA-WE-AAA0-06 12 8050923 8050923 G A NANOGP1 RNA 0.12 TCGA-WE-AAA0-06 12 81657092 81657092 C T PPFIA2 Missense_Mutation p.M1211I 0.67 deleterious_low_confidence(0.01) benign(0.034) TCGA-WE-AAA0-06 12 8203213 8203213 C T FOXJ2 Missense_Mutation p.P545S 0.21 tolerated(0.09) possibly_damaging(0.746) TCGA-WE-AAA0-06 12 8203214 8203214 C T FOXJ2 Missense_Mutation p.P545L 0.21 deleterious(0.02) possibly_damaging(0.804) TCGA-WE-AAA0-06 12 8211204 8211204 G A C3AR1 3'UTR 0.26 TCGA-WE-AAA0-06 12 86198878 86198878 C T RASSF9 Missense_Mutation p.G304R 0.26 tolerated(0.22) benign(0.444) TCGA-WE-AAA0-06 12 9086561 9086561 C T PHC1 Missense_Mutation p.P665L 0.30 deleterious(0.04) unknown(0) TCGA-WE-AAA0-06 12 95867875 95867875 C T METAP2 5'UTR 0.61 TCGA-WE-AAA0-06 13 101747939 101747939 C T NALCN Nonsense_Mutation p.W1085* 0.29 TCGA-WE-AAA0-06 13 106124936 106124936 G A DAOA Nonsense_Mutation p.W61* 0.24 TCGA-WE-AAA0-06 13 114079436 114079436 C T ADPRHL1 Silent p.R235R 0.30 TCGA-WE-AAA0-06 13 19751559 19751559 G A TUBA3C Silent p.I188I 0.26 TCGA-WE-AAA0-06 13 21303233 21303233 C T N6AMT2 Missense_Mutation p.D211N 0.24 tolerated(0.07) benign(0.093) TCGA-WE-AAA0-06 13 21373445 21373445 C T XPO4 Nonsense_Mutation p.W727* 0.31 TCGA-WE-AAA0-06 13 21373446 21373446 C T XPO4 Nonsense_Mutation p.W727* 0.31 TCGA-WE-AAA0-06 13 24470986 24470986 C T C1QTNF9B Missense_Mutation p.G47E 0.12 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 13 25009360 25009360 G A PARP4 Missense_Mutation p.P1307S 0.22 tolerated(1) benign(0) TCGA-WE-AAA0-06 13 25016085 25016085 G T PARP4 Missense_Mutation p.P1189T 0.26 tolerated(0.24) benign(0.011) TCGA-WE-AAA0-06 13 25171604 25171604 G A RP11-556N21.1 RNA 0.26 TCGA-WE-AAA0-06 13 25895135 25895135 A T NUPL1 Missense_Mutation p.E285D 0.23 tolerated(0.39) benign(0.02) TCGA-WE-AAA0-06 13 29286978 29286978 C T SLC46A3 Missense_Mutation p.G300E 0.34 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 13 32527042 32527042 C A EEF1DP3 RNA 0.18 TCGA-WE-AAA0-06 13 32527043 32527043 C A EEF1DP3 RNA 0.18 TCGA-WE-AAA0-06 13 33684954 33684954 C T STARD13 Missense_Mutation p.E900K 0.24 tolerated(0.15) benign(0.283) TCGA-WE-AAA0-06 13 33700224 33700224 G A STARD13 Silent p.L692L 0.30 TCGA-WE-AAA0-06 13 36050005 36050005 C T MAB21L1 Missense_Mutation p.D91N 0.24 deleterious(0) possibly_damaging(0.884) TCGA-WE-AAA0-06 13 37679366 37679366 C T CSNK1A1L Missense_Mutation p.E10K 0.35 deleterious_low_confidence(0) benign(0.283) TCGA-WE-AAA0-06 13 39338470 39338470 C T FREM2 Missense_Mutation p.R1765C 0.21 deleterious(0.01) benign(0.009) TCGA-WE-AAA0-06 13 39454709 39454709 C T FREM2 Missense_Mutation p.P3099S 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.541) TCGA-WE-AAA0-06 13 41941751 41941751 C T NAA16 Silent p.P572P 0.21 TCGA-WE-AAA0-06 13 42742940 42742940 C T DGKH Silent p.T451T 0.31 TCGA-WE-AAA0-06 13 47260051 47260051 C T LRCH1 Missense_Mutation p.L233F 0.24 deleterious(0) possibly_damaging(0.862) TCGA-WE-AAA0-06 13 47466613 47466613 G A HTR2A Silent p.V175V 0.28 TCGA-WE-AAA0-06 13 53624707 53624707 C T OLFM4 Missense_Mutation p.T445I 0.36 tolerated(0.11) benign(0.081) TCGA-WE-AAA0-06 13 58208127 58208127 G A PCDH17 Missense_Mutation p.E483K 0.27 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 13 70370920 70370920 G A KLHL1 Missense_Mutation p.T530I 0.33 deleterious(0.01) probably_damaging(0.921) TCGA-WE-AAA0-06 13 77739522 77739522 A C MYCBP2 Missense_Mutation p.N2077K 0.20 possibly_damaging(0.881) TCGA-WE-AAA0-06 13 79939824 79939824 C T RBM26 Missense_Mutation p.E436K 0.24 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 13 79953028 79953028 G A RBM26 Missense_Mutation p.P29L 0.33 deleterious(0) unknown(0) TCGA-WE-AAA0-06 13 84455409 84455409 G A SLITRK1 Silent p.F78F 0.18 TCGA-WE-AAA0-06 13 92101069 92101069 T G GPC5 Missense_Mutation p.M73R 0.29 deleterious(0) probably_damaging(0.965) TCGA-WE-AAA0-06 13 96241430 96241430 G A DZIP1 Missense_Mutation p.P669S 0.18 tolerated(0.6) benign(0.152) TCGA-WE-AAA0-06 13 99171613 99171613 T C STK24 Missense_Mutation p.K65E 0.30 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 13 99478164 99478164 G A DOCK9 Missense_Mutation p.P1662L 0.29 tolerated_low_confidence(0.29) benign(0.003) TCGA-WE-AAA0-06 13 99478165 99478165 G A DOCK9 Missense_Mutation p.P1662S 0.29 tolerated_low_confidence(0.97) benign(0.004) TCGA-WE-AAA0-06 14 101459582 101459582 G A SNORD114-31 RNA 0.22 TCGA-WE-AAA0-06 14 101512323 101512323 C T MIR381 RNA 0.20 TCGA-WE-AAA0-06 14 102476414 102476414 C T DYNC1H1 Missense_Mutation p.P2071L 0.22 probably_damaging(1) TCGA-WE-AAA0-06 14 102805254 102805254 G A ZNF839 Silent p.Q587Q 0.37 TCGA-WE-AAA0-06 14 105404391 105404391 C T AHNAK2 3'UTR 0.15 TCGA-WE-AAA0-06 14 106174124 106174124 G A IGHA1 Missense_Mutation p.S222F 0.30 deleterious(0.01) possibly_damaging(0.539) TCGA-WE-AAA0-06 14 106373097 106373097 C T IGHD2-8 Silent p.R1R 0.32 TCGA-WE-AAA0-06 14 106725283 106725283 G A IGHV3-23 Missense_Mutation p.S90F 0.17 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-WE-AAA0-06 14 107078471 107078471 C T IGHV1-58 Missense_Mutation p.E85K 0.32 benign(0.003) TCGA-WE-AAA0-06 14 19563537 19563537 A G POTEG Missense_Mutation p.N351D 0.16 tolerated(0.26) benign(0.005) TCGA-WE-AAA0-06 14 20444517 20444517 C T OR4K15 Silent p.F280F 0.29 TCGA-WE-AAA0-06 14 20483095 20483095 G A OR4K14 Silent p.F86F 0.44 TCGA-WE-AAA0-06 14 20528503 20528503 G A OR4L1 Silent p.Q100Q 0.37 TCGA-WE-AAA0-06 14 20529037 20529037 C T OR4L1 Silent p.I278I 0.36 TCGA-WE-AAA0-06 14 20666525 20666525 G A OR11G2 Missense_Mutation p.G344E 0.22 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-WE-AAA0-06 14 20852025 20852025 A G TEP1 Missense_Mutation p.L1196S 0.24 tolerated(0.37) benign(0.018) TCGA-WE-AAA0-06 14 21109787 21109787 G A OR6S1 Missense_Mutation p.L22F 0.19 tolerated(0.08) benign(0.025) TCGA-WE-AAA0-06 14 21869057 21869057 C T CHD8 Silent p.V1449V 0.17 TCGA-WE-AAA0-06 14 21896290 21896290 C T CHD8 Missense_Mutation p.E447K 0.31 tolerated_low_confidence(0.6) benign(0.012) TCGA-WE-AAA0-06 14 22038257 22038257 C T OR10G3 Missense_Mutation p.V207M 0.28 tolerated(0.1) probably_damaging(1) TCGA-WE-AAA0-06 14 22133574 22133574 C T OR4E2 Missense_Mutation p.S93F 0.29 deleterious(0.01) benign(0.049) TCGA-WE-AAA0-06 14 22592188 22592188 C T TRAV26-1 Silent p.I91I 0.27 TCGA-WE-AAA0-06 14 22690271 22690271 G A TRAV35 Missense_Mutation p.G77E 0.26 tolerated(1) benign(0.07) TCGA-WE-AAA0-06 14 22932140 22932140 C T TRDC Missense_Mutation p.S73L 0.48 deleterious(0.04) benign(0.051) TCGA-WE-AAA0-06 14 23451505 23451505 C T AJUBA 5'UTR 0.27 TCGA-WE-AAA0-06 14 23902377 23902377 G A MYH7 Silent p.I87I 0.27 TCGA-WE-AAA0-06 14 24475223 24475223 G A DHRS4L2 3'UTR 0.15 TCGA-WE-AAA0-06 14 24664025 24664031 GCAGACT - TM9SF1 Frame_Shift_Del p.V66Afs*66 0.23 TCGA-WE-AAA0-06 14 33014643 33014643 G A AKAP6 Missense_Mutation p.E262K 0.20 deleterious(0) possibly_damaging(0.64) TCGA-WE-AAA0-06 14 33292535 33292535 C T AKAP6 Missense_Mutation p.P1839L 0.15 tolerated(0.18) benign(0.146) TCGA-WE-AAA0-06 14 35245352 35245352 G A BAZ1A Missense_Mutation p.S869F 0.29 deleterious(0.04) probably_damaging(0.962) TCGA-WE-AAA0-06 14 36074875 36074875 C T RALGAPA1 Missense_Mutation p.G1818R 0.32 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 14 39716326 39716326 C T MIA2 Missense_Mutation p.A183V 0.21 tolerated(0.11) benign(0.273) TCGA-WE-AAA0-06 14 45370066 45370066 T G C14orf28 Missense_Mutation p.L143R 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-WE-AAA0-06 14 47120921 47120921 G A RPL10L Missense_Mutation p.R7C 0.22 tolerated(0.06) benign(0.055) TCGA-WE-AAA0-06 14 51058322 51058322 G A ATL1 Missense_Mutation p.V163I 0.31 tolerated(0.7) benign(0.099) TCGA-WE-AAA0-06 14 54417313 54417313 G A BMP4 Missense_Mutation p.L222F 0.19 tolerated(0.36) benign(0.35) TCGA-WE-AAA0-06 14 55510623 55510623 G A SOCS4 Nonsense_Mutation p.W288* 0.23 TCGA-WE-AAA0-06 14 55611853 55611867 CTGACCACTTCAAGG AAAA LGALS3 Frame_Shift_Del p.P206Qfs*6 0.15 TCGA-WE-AAA0-06 14 55900413 55900413 G A TBPL2 Silent p.I241I 0.33 TCGA-WE-AAA0-06 14 57957677 57957677 T C C14orf105 Intron 0.22 TCGA-WE-AAA0-06 14 61180100 61180100 A T SIX4 3'UTR 0.30 TCGA-WE-AAA0-06 14 63175008 63175008 G A KCNH5 Missense_Mutation p.P729S 0.25 tolerated(0.98) benign(0) TCGA-WE-AAA0-06 14 63179360 63179360 G A KCNH5 Intron 0.31 TCGA-WE-AAA0-06 14 65252634 65252634 G A SPTB Silent p.S1199S 0.21 TCGA-WE-AAA0-06 14 66209050 66209050 G A FUT8 Silent p.T550T 0.23 TCGA-WE-AAA0-06 14 70712649 70712649 G A ADAM21P1 RNA 0.13 TCGA-WE-AAA0-06 14 71067380 71067380 C T MED6 5'UTR 0.30 TCGA-WE-AAA0-06 14 71197440 71197440 A C MAP3K9 Missense_Mutation p.F1005C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 14 71227824 71227824 C A MAP3K9 Missense_Mutation p.R299L 0.26 deleterious(0) probably_damaging(0.989) TCGA-WE-AAA0-06 14 74062415 74062415 C T ACOT4 3'UTR 0.22 TCGA-WE-AAA0-06 14 75330067 75330067 C T PROX2 Silent p.R157R 0.19 TCGA-WE-AAA0-06 14 76349193 76349193 C T TTLL5 Missense_Mutation p.P1230S 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-WE-AAA0-06 14 77705108 77705108 T G TMEM63C Missense_Mutation p.F241L 0.20 deleterious(0.03) possibly_damaging(0.488) TCGA-WE-AAA0-06 14 78170727 78170727 G A ALKBH1 Missense_Mutation p.L93F 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-WE-AAA0-06 14 79117607 79117607 C T NRXN3 Missense_Mutation p.P14S 0.29 deleterious(0.01) probably_damaging(0.95) TCGA-WE-AAA0-06 14 81251823 81251823 G A CEP128 Nonsense_Mutation p.R543* 0.35 TCGA-WE-AAA0-06 14 86089747 86089747 C T FLRT2 Missense_Mutation p.P630L 0.26 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 14 89123778 89123778 G A EML5 Missense_Mutation p.R1316C 0.19 deleterious(0) probably_damaging(0.987) TCGA-WE-AAA0-06 14 91749717 91749717 G A CCDC88C Missense_Mutation p.P1529L 0.43 tolerated(0.17) benign(0.005) TCGA-WE-AAA0-06 14 94109921 94109921 C T UNC79 Silent p.A1836A 0.19 TCGA-WE-AAA0-06 14 94708253 94708253 A T PPP4R4 Nonsense_Mutation p.K369* 0.25 TCGA-WE-AAA0-06 14 94756430 94756430 G A SERPINA10 Silent p.F167F 0.30 TCGA-WE-AAA0-06 14 95029959 95029959 C T SERPINA4 Missense_Mutation p.P47L 0.35 deleterious(0.03) benign(0.071) TCGA-WE-AAA0-06 14 95085581 95085581 C T SERPINA3 Silent p.F231F 0.24 TCGA-WE-AAA0-06 14 95556769 95556769 G A DICER1 3'UTR 0.35 TCGA-WE-AAA0-06 14 95583017 95583017 G A DICER1 Nonsense_Mutation p.R509* 0.25 TCGA-WE-AAA0-06 14 96707604 96707604 C T BDKRB2 Silent p.I313I 0.24 TCGA-WE-AAA0-06 15 20496645 20496645 G A CHEK2P2 RNA 0.06 TCGA-WE-AAA0-06 15 20496664 20496664 C T CHEK2P2 RNA 0.15 TCGA-WE-AAA0-06 15 20649609 20649609 C T HERC2P3 RNA 0.12 TCGA-WE-AAA0-06 15 21051224 21051224 T A POTEB2 Missense_Mutation p.Q412H 0.10 deleterious(0.02) benign(0.1) TCGA-WE-AAA0-06 15 23932198 23932198 G A NDN Missense_Mutation p.P56L 0.42 tolerated(0.37) benign(0.005) TCGA-WE-AAA0-06 15 24923060 24923060 G A NPAP1 Silent p.V682V 0.26 TCGA-WE-AAA0-06 15 25225182 25225182 C T SNRPN 3'Flank 0.55 TCGA-WE-AAA0-06 15 25427435 25427435 C T SNORD115-6 3'Flank 0.30 TCGA-WE-AAA0-06 15 28096544 28096544 G A OCA2 Silent p.F774F 0.26 TCGA-WE-AAA0-06 15 28273191 28273191 G A OCA2 Missense_Mutation p.P114L 0.17 deleterious_low_confidence(0.01) benign(0.15) TCGA-WE-AAA0-06 15 28514510 28514510 G C HERC2 Missense_Mutation p.Q444E 0.22 benign(0.026) TCGA-WE-AAA0-06 15 30026524 30026524 G A TJP1 Silent p.L490L 0.29 TCGA-WE-AAA0-06 15 31776474 31776474 C T OTUD7A Missense_Mutation p.E602K 0.32 tolerated_low_confidence(0.14) benign(0.115) TCGA-WE-AAA0-06 15 34060900 34060900 C T RYR3 Missense_Mutation p.S2916F 0.18 probably_damaging(0.993) TCGA-WE-AAA0-06 15 34355052 34355052 T A CHRM5 Missense_Mutation p.I45N 0.22 deleterious(0) benign(0.426) TCGA-WE-AAA0-06 15 34635360 34635360 C T NOP10 5'UTR 0.31 TCGA-WE-AAA0-06 15 40564463 40564463 C T PAK6 Silent p.P299P 0.29 TCGA-WE-AAA0-06 15 41145434 41145434 G A SPINT1 Silent p.T196T 0.16 TCGA-WE-AAA0-06 15 41860479 41860479 G A TYRO3 Nonsense_Mutation p.W342* 0.12 TCGA-WE-AAA0-06 15 42058845 42058845 C T MGA Silent p.F2855F 0.26 TCGA-WE-AAA0-06 15 42285000 42285000 C T PLA2G4E Missense_Mutation p.E469K 0.25 deleterious(0) possibly_damaging(0.822) TCGA-WE-AAA0-06 15 42651944 42651944 C T CAPN3 5'UTR 0.27 TCGA-WE-AAA0-06 15 43067564 43067564 C T TTBK2 Silent p.L589L 0.31 TCGA-WE-AAA0-06 15 43067786 43067786 G A TTBK2 Silent p.A515A 0.29 TCGA-WE-AAA0-06 15 43120136 43120136 T G TTBK2 Missense_Mutation p.D176A 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-WE-AAA0-06 15 43499613 43499613 C T EPB42 Missense_Mutation p.V398I 0.22 deleterious(0.02) possibly_damaging(0.652) TCGA-WE-AAA0-06 15 43662061 43662061 G A ZSCAN29 Silent p.F17F 0.31 TCGA-WE-AAA0-06 15 43813779 43813779 C T MAP1A Silent p.S36S 0.27 TCGA-WE-AAA0-06 15 43826844 43826844 C T PPIP5K1 3'UTR 0.29 TCGA-WE-AAA0-06 15 44084579 44084579 C T SERF2 Missense_Mutation p.T2I 0.22 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-WE-AAA0-06 15 44887581 44887581 C T SPG11 Missense_Mutation p.G1504E 0.14 tolerated(0.2) benign(0.002) TCGA-WE-AAA0-06 15 44921440 44921440 G A SPG11 Missense_Mutation p.H628Y 0.24 tolerated(0.22) possibly_damaging(0.888) TCGA-WE-AAA0-06 15 48443683 48443683 G A MYEF2 Silent p.S431S 0.28 TCGA-WE-AAA0-06 15 50209192 50209192 C T ATP8B4 Missense_Mutation p.D694N 0.27 tolerated(0.09) possibly_damaging(0.501) TCGA-WE-AAA0-06 15 50535015 50535015 C T HDC Silent p.Q477Q 0.12 TCGA-WE-AAA0-06 15 51503070 51503070 C T CYP19A1 Missense_Mutation p.E483K 0.25 deleterious(0) possibly_damaging(0.485) TCGA-WE-AAA0-06 15 54307936 54307936 G A UNC13C Missense_Mutation p.E946K 0.38 deleterious_low_confidence(0.04) benign(0.001) TCGA-WE-AAA0-06 15 54786880 54786880 G A UNC13C Missense_Mutation p.E1670K 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.897) TCGA-WE-AAA0-06 15 62165491 62165491 C T VPS13C Missense_Mutation p.R3511K 0.32 tolerated(1) benign(0.001) TCGA-WE-AAA0-06 15 63132696 63132696 G A TLN2 Missense_Mutation p.E2506K 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-WE-AAA0-06 15 64222624 64222624 C T DAPK2 Missense_Mutation p.G205D 0.26 deleterious(0) probably_damaging(0.967) TCGA-WE-AAA0-06 15 67501812 67501812 G A AAGAB Silent p.P202P 0.30 TCGA-WE-AAA0-06 15 71185104 71185104 G A THAP10 5'UTR 0.25 TCGA-WE-AAA0-06 15 71535119 71535119 C T THSD4 Missense_Mutation p.S199F 0.35 tolerated(0.07) benign(0.007) TCGA-WE-AAA0-06 15 72454320 72454320 G A GRAMD2 3'UTR 0.19 TCGA-WE-AAA0-06 15 72642713 72642713 A C HEXA Intron 0.24 TCGA-WE-AAA0-06 15 72700033 72700033 G A TMEM202 Silent p.G207G 0.20 TCGA-WE-AAA0-06 15 84245374 84245374 G A SH3GL3 Missense_Mutation p.D169N 0.36 deleterious(0) probably_damaging(0.965) TCGA-WE-AAA0-06 15 85400088 85400088 G A ALPK3 Missense_Mutation p.E909K 0.26 deleterious_low_confidence(0.01) benign(0.017) TCGA-WE-AAA0-06 15 89074601 89074601 C T DET1 Silent p.R123R 0.36 TCGA-WE-AAA0-06 15 89398272 89398272 C T ACAN Missense_Mutation p.P819L 0.19 deleterious(0.01) benign(0) TCGA-WE-AAA0-06 15 89744423 89744423 C T ABHD2 3'UTR 0.24 TCGA-WE-AAA0-06 15 90342742 90342742 T C ANPEP Missense_Mutation p.N623S 0.28 deleterious(0) probably_damaging(0.981) TCGA-WE-AAA0-06 15 90764696 90764696 C T SEMA4B Silent p.S231S 0.36 TCGA-WE-AAA0-06 15 91456842 91456842 A T MAN2A2 Splice_Site p.X907_splice 0.22 TCGA-WE-AAA0-06 15 91769832 91769832 C T SV2B Silent p.F113F 0.24 TCGA-WE-AAA0-06 15 94910994 94910994 G A MCTP2 Missense_Mutation p.E488K 0.23 deleterious(0) probably_damaging(0.921) TCGA-WE-AAA0-06 15 95022396 95022396 C T MCTP2 3'UTR 0.27 TCGA-WE-AAA0-06 16 11097104 11097104 G A CLEC16A Silent p.E415E 0.29 TCGA-WE-AAA0-06 16 1260809 1260809 C T CACNA1H Missense_Mutation p.S1354F 0.49 tolerated(1) possibly_damaging(0.649) TCGA-WE-AAA0-06 16 1270638 1270638 G A CACNA1H Missense_Mutation p.E2236K 0.18 tolerated_low_confidence(0.05) benign(0.345) TCGA-WE-AAA0-06 16 1272321 1272321 T A TPSG1 Missense_Mutation p.S178C 0.45 tolerated(0.07) possibly_damaging(0.741) TCGA-WE-AAA0-06 16 1370241 1370241 T A UBE2I Nonsense_Mutation p.L97* 0.33 TCGA-WE-AAA0-06 16 1370243 1370243 G T UBE2I Nonsense_Mutation p.E98* 0.34 TCGA-WE-AAA0-06 16 14758831 14758831 C T BFAR Missense_Mutation p.H355Y 0.34 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 16 16282829 16282829 G A ABCC6 Silent p.V546V 0.30 TCGA-WE-AAA0-06 16 1633341 1633341 A T IFT140 Missense_Mutation p.L469H 0.28 tolerated(0.5) possibly_damaging(0.614) TCGA-WE-AAA0-06 16 1748941 1748941 G C HN1L Missense_Mutation p.R172P 0.35 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 16 18555062 18555062 G A NOMO2 Silent p.S204S 0.27 TCGA-WE-AAA0-06 16 19194955 19194955 G A SYT17 Missense_Mutation p.R146Q 0.25 deleterious(0.03) benign(0.048) TCGA-WE-AAA0-06 16 19468081 19468081 C T TMC5 Intron 0.24 TCGA-WE-AAA0-06 16 2028687 2028687 C T TBL3 3'UTR 0.33 TCGA-WE-AAA0-06 16 20325997 20325997 C T GP2 Missense_Mutation p.G513R 0.22 deleterious(0.02) possibly_damaging(0.66) TCGA-WE-AAA0-06 16 20492231 20492231 C T ACSM2A Silent p.P499P 0.27 TCGA-WE-AAA0-06 16 20548570 20548570 C T ACSM2B 3'UTR 0.35 TCGA-WE-AAA0-06 16 20576054 20576054 C T ACSM2B Silent p.Q38Q 0.22 TCGA-WE-AAA0-06 16 20787272 20787272 C T ACSM3 Missense_Mutation p.L111F 0.36 tolerated(0.18) probably_damaging(0.993) TCGA-WE-AAA0-06 16 21030992 21030992 C T DNAH3 Silent p.R1992R 0.24 TCGA-WE-AAA0-06 16 24196865 24196865 G A PRKCB Missense_Mutation p.E567K 0.24 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 16 24373074 24373074 C T CACNG3 Missense_Mutation p.L280F 0.19 tolerated(0.1) benign(0.19) TCGA-WE-AAA0-06 16 26147067 26147067 C T HS3ST4 Missense_Mutation p.P290L 0.30 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA0-06 16 2692260 2692260 C T CTD-3126B10.4 3'Flank 0.25 TCGA-WE-AAA0-06 16 27476853 27476853 G A GTF3C1 Silent p.L1695L 0.17 TCGA-WE-AAA0-06 16 28603451 28603451 C T SULT1A2 Silent p.G262G 0.27 TCGA-WE-AAA0-06 16 28878014 28878014 C T SH2B1 Missense_Mutation p.S200F 0.21 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 16 28883525 28883525 C T SH2B1 Nonsense_Mutation p.Q510* 0.46 TCGA-WE-AAA0-06 16 30680974 30680974 G A FBRS 3'UTR 0.56 TCGA-WE-AAA0-06 16 30723167 30723167 G A SRCAP Missense_Mutation p.D502N 0.24 unknown(0) TCGA-WE-AAA0-06 16 30762703 30762703 C T PHKG2 Intron 0.25 TCGA-WE-AAA0-06 16 30795469 30795469 C T ZNF629 Silent p.E60E 0.45 TCGA-WE-AAA0-06 16 30900280 30900280 G A BCL7C Intron 0.28 TCGA-WE-AAA0-06 16 31090899 31090899 C T ZNF646 Missense_Mutation p.S1085F 0.23 tolerated(0.05) probably_damaging(0.996) TCGA-WE-AAA0-06 16 31539946 31539946 C T AHSP Silent p.F81F 0.38 TCGA-WE-AAA0-06 16 3188760 3188760 C T ZNF213 Missense_Mutation p.L180F 0.26 tolerated(0.69) benign(0.001) TCGA-WE-AAA0-06 16 3487421 3487421 G A ZNF597 Missense_Mutation p.S93F 0.29 tolerated(0.12) benign(0.011) TCGA-WE-AAA0-06 16 3544850 3544850 G A C16orf90 Missense_Mutation p.P25L 0.29 tolerated_low_confidence(0.1) probably_damaging(0.958) TCGA-WE-AAA0-06 16 3646317 3646317 G A SLX4 Silent p.L587L 0.40 TCGA-WE-AAA0-06 16 4310101 4310101 G A TFAP4 Missense_Mutation p.T271I 0.25 deleterious(0) unknown(0) TCGA-WE-AAA0-06 16 46655251 46655251 C T SHCBP1 Silent p.T7T 0.29 TCGA-WE-AAA0-06 16 47621631 47621631 G A PHKB Missense_Mutation p.R276K 0.30 deleterious(0.01) possibly_damaging(0.829) TCGA-WE-AAA0-06 16 47621632 47621632 G A PHKB Silent p.R276R 0.30 TCGA-WE-AAA0-06 16 49313431 49313431 C T CBLN1 Missense_Mutation p.G156R 0.26 deleterious(0) probably_damaging(0.952) TCGA-WE-AAA0-06 16 49670582 49670582 C T ZNF423 Silent p.R827R 0.33 TCGA-WE-AAA0-06 16 51173881 51173881 G C SALL1 Missense_Mutation p.T751S 0.33 deleterious(0) probably_damaging(0.947) TCGA-WE-AAA0-06 16 51174109 51174109 G A SALL1 Missense_Mutation p.P675L 0.31 deleterious(0) possibly_damaging(0.88) TCGA-WE-AAA0-06 16 51174599 51174599 G A SALL1 Missense_Mutation p.P512S 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 16 56902285 56902285 G A SLC12A3 Splice_Site p.X169_splice 0.37 TCGA-WE-AAA0-06 16 57493499 57493499 C T COQ9 Missense_Mutation p.A245V 0.25 tolerated(0.29) benign(0.158) TCGA-WE-AAA0-06 16 57741473 57741473 C T CCDC135 Silent p.I320I 0.38 TCGA-WE-AAA0-06 16 58320012 58320012 G A PRSS54 Silent p.I117I 0.32 TCGA-WE-AAA0-06 16 58438638 58438638 C T GINS3 3'UTR 0.42 TCGA-WE-AAA0-06 16 58543071 58543071 G A NDRG4 Missense_Mutation p.G316E 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-WE-AAA0-06 16 603014 603014 C T CAPN15 Missense_Mutation p.T1019I 0.21 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 16 61859050 61859050 C T CDH8 Missense_Mutation p.R234K 0.30 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 16 61935320 61935320 C T CDH8 Missense_Mutation p.G104R 0.24 deleterious(0) probably_damaging(0.963) TCGA-WE-AAA0-06 16 633422 633422 C T PIGQ Missense_Mutation p.P691S 0.29 deleterious_low_confidence(0) benign(0.048) TCGA-WE-AAA0-06 16 66612887 66612887 C T CMTM1 Missense_Mutation p.P282S 0.27 tolerated_low_confidence(0.9) benign(0.002) TCGA-WE-AAA0-06 16 70333199 70333199 C T DDX19B 5'UTR 0.42 TCGA-WE-AAA0-06 16 70333200 70333200 C T DDX19B 5'UTR 0.42 TCGA-WE-AAA0-06 16 70721854 70721854 G A VAC14 Silent p.L776L 0.32 TCGA-WE-AAA0-06 16 70852333 70852333 G A HYDIN Missense_Mutation p.P4857L 0.45 probably_damaging(0.958) TCGA-WE-AAA0-06 16 70908359 70908359 C T HYDIN Silent p.E3599E 0.35 TCGA-WE-AAA0-06 16 71004460 71004460 G A HYDIN Missense_Mutation p.S1861F 0.33 probably_damaging(0.983) TCGA-WE-AAA0-06 16 71319448 71319448 G A CMTR2 Missense_Mutation p.P126S 0.33 tolerated(0.06) possibly_damaging(0.513) TCGA-WE-AAA0-06 16 71571246 71571246 G A CHST4 Missense_Mutation p.M222I 0.21 tolerated(0.17) benign(0.124) TCGA-WE-AAA0-06 16 76569584 76569584 G A CNTNAP4 Silent p.G893G 0.26 TCGA-WE-AAA0-06 16 7657328 7657328 G A RBFOX1 Missense_Mutation p.E242K 0.31 deleterious(0) benign(0.135) TCGA-WE-AAA0-06 16 77401601 77401601 C T ADAMTS18 Missense_Mutation p.R172Q 0.23 tolerated(1) benign(0.004) TCGA-WE-AAA0-06 16 77756458 77756458 G A NUDT7 5'UTR 0.38 TCGA-WE-AAA0-06 16 77910298 77910298 G A VAT1L Missense_Mutation p.D252N 0.33 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 16 81944288 81944288 G A PLCG2 Missense_Mutation p.D633N 0.21 deleterious(0.05) possibly_damaging(0.715) TCGA-WE-AAA0-06 16 82034479 82034479 G A SDR42E1 5'UTR 0.19 TCGA-WE-AAA0-06 16 83983053 83983053 G A OSGIN1 5'UTR 0.29 TCGA-WE-AAA0-06 16 84215620 84215620 G A TAF1C Missense_Mutation p.L256F 0.25 tolerated(0.42) benign(0.222) TCGA-WE-AAA0-06 16 84229739 84229739 C T ADAD2 Missense_Mutation p.S512L 0.33 deleterious(0) benign(0.283) TCGA-WE-AAA0-06 16 87367510 87367510 G A FBXO31 Missense_Mutation p.P460L 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 16 89651263 89651263 G A CPNE7 Missense_Mutation p.E272K 0.25 deleterious(0) probably_damaging(0.968) TCGA-WE-AAA0-06 16 89779054 89779054 C T VPS9D1 Missense_Mutation p.A168T 0.24 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 16 89779055 89779055 C T VPS9D1 Missense_Mutation p.M167I 0.23 deleterious(0.02) benign(0.014) TCGA-WE-AAA0-06 16 89925708 89925708 C T SPIRE2 Missense_Mutation p.P470S 0.24 tolerated(0.23) benign(0.006) TCGA-WE-AAA0-06 16 90028230 90028230 C T DEF8 Silent p.I316I 0.30 TCGA-WE-AAA0-06 16 90133275 90133275 G A PRDM7 Silent p.H115H 0.24 TCGA-WE-AAA0-06 16 9857717 9857717 G A GRIN2A Silent p.F1228F 0.26 TCGA-WE-AAA0-06 16 9858564 9858564 T C GRIN2A Missense_Mutation p.N946S 0.28 tolerated(0.63) possibly_damaging(0.473) TCGA-WE-AAA0-06 17 10304766 10304766 C T MYH8 Silent p.V978V 0.41 TCGA-WE-AAA0-06 17 10363368 10363368 G A MYH4 Silent p.F439F 0.34 TCGA-WE-AAA0-06 17 10417399 10417399 G A MYH1 Silent p.V192V 0.31 TCGA-WE-AAA0-06 17 10432314 10432314 G A MYH2 Missense_Mutation p.S1146F 0.37 deleterious(0) benign(0.075) TCGA-WE-AAA0-06 17 10446444 10446444 C T MYH2 Missense_Mutation p.G259E 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 17 11696849 11696849 G A DNAH9 Silent p.V2697V 0.37 TCGA-WE-AAA0-06 17 11738067 11738067 G A DNAH9 Missense_Mutation p.R3120K 0.50 benign(0.001) TCGA-WE-AAA0-06 17 12626238 12626238 G A MYOCD Missense_Mutation p.E110K 0.38 tolerated(0.11) probably_damaging(0.992) TCGA-WE-AAA0-06 17 17700924 17700925 GG A RAI1 Frame_Shift_Del p.R1556Vfs*31 0.39 TCGA-WE-AAA0-06 17 18654295 18654295 C T FBXW10 Missense_Mutation p.P351S 0.40 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 17 25749151 25749151 C T TBC1D3P5 RNA 0.21 TCGA-WE-AAA0-06 17 26966427 26966427 G A KIAA0100 Missense_Mutation p.H379Y 0.29 deleterious(0.03) probably_damaging(0.95) TCGA-WE-AAA0-06 17 27014405 27014405 C T SUPT6H Silent p.N974N 0.25 TCGA-WE-AAA0-06 17 27207516 27207516 G A FLOT2 3'UTR 0.24 TCGA-WE-AAA0-06 17 27895806 27895806 G A TP53I13 Silent p.L10L 0.39 TCGA-WE-AAA0-06 17 28749967 28749967 C T CPD Missense_Mutation p.S528F 0.19 deleterious(0) probably_damaging(0.987) TCGA-WE-AAA0-06 17 30980866 30980866 G A MYO1D Missense_Mutation p.R864C 0.35 deleterious(0.02) possibly_damaging(0.901) TCGA-WE-AAA0-06 17 3144011 3144011 C T OR1D4 RNA 0.43 TCGA-WE-AAA0-06 17 32598267 32598267 C T CCL7 Missense_Mutation p.P60L 0.22 deleterious(0.02) possibly_damaging(0.599) TCGA-WE-AAA0-06 17 32598268 32598268 C T CCL7 Silent p.P60P 0.23 TCGA-WE-AAA0-06 17 3324814 3324814 G A OR3A3 Missense_Mutation p.R318Q 0.42 tolerated(0.32) benign(0.01) TCGA-WE-AAA0-06 17 33690215 33690215 G A SLFN11 Silent p.I204I 0.24 TCGA-WE-AAA0-06 17 3433453 3433453 G A TRPV3 Silent p.L370L 0.29 TCGA-WE-AAA0-06 17 36485276 36485276 C T GPR179 Silent p.G1392G 0.28 TCGA-WE-AAA0-06 17 36490941 36490941 G A GPR179 Silent p.D540D 0.28 TCGA-WE-AAA0-06 17 36705388 36705388 G A SRCIN1 Silent p.P1007P 0.33 TCGA-WE-AAA0-06 17 37119252 37119252 G A FBXO47 Silent p.F9F 0.21 TCGA-WE-AAA0-06 17 37564856 37564856 G A MED1 Silent p.A1206A 0.37 TCGA-WE-AAA0-06 17 38609326 38609326 C T IGFBP4 Nonsense_Mutation p.R147* 0.20 TCGA-WE-AAA0-06 17 39019845 39019845 C T KRT12 Silent p.K329K 0.33 TCGA-WE-AAA0-06 17 39156103 39156103 C T KRTAP3-2 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.009) TCGA-WE-AAA0-06 17 39340774 39340774 G A KRTAP4-1 Silent p.T111T 0.23 TCGA-WE-AAA0-06 17 39406032 39406032 G A KRTAP9-4 Silent p.R20R 0.23 TCGA-WE-AAA0-06 17 39596700 39596700 G A KRT38 Silent p.I158I 0.34 TCGA-WE-AAA0-06 17 39637085 39637085 C T KRT35 Missense_Mutation p.G89R 0.32 tolerated(0.26) benign(0.086) TCGA-WE-AAA0-06 17 39673385 39673385 G A KRT15 Silent p.V177V 0.30 TCGA-WE-AAA0-06 17 39726185 39726185 C T KRT9 Missense_Mutation p.E270K 0.26 tolerated(0.1) benign(0.1) TCGA-WE-AAA0-06 17 40330239 40330239 G A KCNH4 Missense_Mutation p.S155F 0.31 tolerated(0.39) benign(0.013) TCGA-WE-AAA0-06 17 40344401 40344401 C T GHDC Silent p.R249R 0.20 TCGA-WE-AAA0-06 17 40344402 40344402 C T GHDC Missense_Mutation p.R249Q 0.19 tolerated(0.17) benign(0.079) TCGA-WE-AAA0-06 17 40690463 40690463 C T NAGLU Missense_Mutation p.P213L 0.30 deleterious(0) probably_damaging(0.99) TCGA-WE-AAA0-06 17 40880933 40880933 G A EZH1 Silent p.S9S 0.23 TCGA-WE-AAA0-06 17 41006617 41006617 C T AOC3 Missense_Mutation p.R585C 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-WE-AAA0-06 17 42248162 42248162 C A ASB16 Missense_Mutation p.A2E 0.22 deleterious(0) possibly_damaging(0.907) TCGA-WE-AAA0-06 17 42483367 42483367 G A GPATCH8 Missense_Mutation p.S182F 0.28 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 17 42855528 42855528 G A ADAM11 Missense_Mutation p.G732S 0.22 tolerated(0.33) benign(0.353) TCGA-WE-AAA0-06 17 44626242 44626242 C T LRRC37A2 Missense_Mutation p.S1246F 0.17 deleterious(0) probably_damaging(0.974) TCGA-WE-AAA0-06 17 45455238 45455238 C T EFCAB13 Silent p.F493F 0.27 TCGA-WE-AAA0-06 17 45668098 45668098 C T NPEPPS Missense_Mutation p.L371F 0.23 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 17 45904553 45904553 C T MRPL10 Silent p.R90R 0.23 TCGA-WE-AAA0-06 17 46022942 46022942 T A PNPO Silent p.A127A 0.14 TCGA-WE-AAA0-06 17 46128819 46128819 C T NFE2L1 Silent p.V113V 0.20 TCGA-WE-AAA0-06 17 4620534 4620534 C T ARRB2 Missense_Mutation p.S148F 0.34 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 17 4620987 4620987 G A ARRB2 Missense_Mutation p.G163D 0.44 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 17 47784386 47784386 G A SLC35B1 Missense_Mutation p.T50I 0.46 deleterious(0.04) benign(0.141) TCGA-WE-AAA0-06 17 47784387 47784387 T A SLC35B1 Missense_Mutation p.T50S 0.46 tolerated(0.12) benign(0.217) TCGA-WE-AAA0-06 17 48212640 48212640 G A PPP1R9B 3'UTR 0.38 TCGA-WE-AAA0-06 17 48542710 48542710 G A CHAD Silent p.F343F 0.21 TCGA-WE-AAA0-06 17 48628471 48628471 C T SPATA20 Missense_Mutation p.S499L 0.28 tolerated(0.16) benign(0.009) TCGA-WE-AAA0-06 17 48653480 48653480 C T CACNA1G Missense_Mutation p.P573S 0.31 tolerated(0.18) benign(0.006) TCGA-WE-AAA0-06 17 48655766 48655766 G A CACNA1G Silent p.R714R 0.19 TCGA-WE-AAA0-06 17 4883810 4883810 G A CAMTA2 Silent p.P292P 0.33 TCGA-WE-AAA0-06 17 4994989 4994989 C T ZFP3 Missense_Mutation p.P64S 0.35 tolerated(0.76) benign(0.001) TCGA-WE-AAA0-06 17 51900906 51900906 G A KIF2B Missense_Mutation p.R171Q 0.20 tolerated(0.08) benign(0.067) TCGA-WE-AAA0-06 17 56388278 56388278 C T BZRAP1 Silent p.E1126E 0.52 TCGA-WE-AAA0-06 17 56389372 56389372 G A BZRAP1 Missense_Mutation p.P937L 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 17 56393484 56393484 G A BZRAP1 Silent p.P666P 0.32 TCGA-WE-AAA0-06 17 56572450 56572450 G C MTMR4 Missense_Mutation p.T1018R 0.28 tolerated(0.08) possibly_damaging(0.863) TCGA-WE-AAA0-06 17 56676730 56676730 G A TEX14 Missense_Mutation p.S665F 0.23 deleterious(0) probably_damaging(0.976) TCGA-WE-AAA0-06 17 58042039 58042039 C T RNFT1 5'UTR 0.23 TCGA-WE-AAA0-06 17 6023897 6023897 G A WSCD1 Silent p.L548L 0.33 TCGA-WE-AAA0-06 17 60769748 60769748 C T MRC2 Missense_Mutation p.P1459L 0.50 tolerated(0.21) benign(0.225) TCGA-WE-AAA0-06 17 61723424 61723424 G A MAP3K3 Missense_Mutation p.G84R 0.18 tolerated(0.16) probably_damaging(0.999) TCGA-WE-AAA0-06 17 6367617 6367617 C T PITPNM3 Missense_Mutation p.E677K 0.38 deleterious(0.02) benign(0.017) TCGA-WE-AAA0-06 17 63957716 63957716 C T CEP112 Silent p.K579K 0.16 TCGA-WE-AAA0-06 17 64683349 64683349 C T PRKCA Missense_Mutation p.S217F 0.34 deleterious(0.05) benign(0.385) TCGA-WE-AAA0-06 17 6554934 6554934 C T MED31 5'UTR 0.50 TCGA-WE-AAA0-06 17 65688775 65688775 C T PITPNC1 Missense_Mutation p.S257F 0.19 deleterious(0) possibly_damaging(0.865) TCGA-WE-AAA0-06 17 66871447 66871447 G A ABCA8 Missense_Mutation p.H1489Y 0.34 deleterious(0.01) possibly_damaging(0.623) TCGA-WE-AAA0-06 17 67149629 67149629 C T ABCA10 Missense_Mutation p.E1342K 0.34 tolerated(0.19) possibly_damaging(0.589) TCGA-WE-AAA0-06 17 7010631 7010631 C T ASGR2 Missense_Mutation p.D144N 0.35 deleterious(0.02) benign(0.294) TCGA-WE-AAA0-06 17 70644955 70644955 C T SLC39A11 Missense_Mutation p.E313K 0.09 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 17 71243505 71243505 C T C17orf80 3'UTR 0.36 TCGA-WE-AAA0-06 17 7130731 7130731 G A DVL2 Missense_Mutation p.A452V 0.35 deleterious(0) probably_damaging(0.988) TCGA-WE-AAA0-06 17 72436367 72436367 C T GPRC5C Missense_Mutation p.P196L 0.31 tolerated(0.06) benign(0.234) TCGA-WE-AAA0-06 17 72619745 72619745 C T CD300E Missense_Mutation p.A6T 0.27 deleterious(0.01) unknown(0) TCGA-WE-AAA0-06 17 72787104 72787104 G T TMEM104 Missense_Mutation p.G119V 0.51 tolerated(0.18) benign(0.001) TCGA-WE-AAA0-06 17 73127134 73127134 C T NT5C Intron 0.53 TCGA-WE-AAA0-06 17 73127135 73127135 C T NT5C Intron 0.50 TCGA-WE-AAA0-06 17 73571063 73571063 G A LLGL2 3'UTR 0.23 TCGA-WE-AAA0-06 17 74068435 74068435 G A SRP68 Silent p.A46A 0.14 TCGA-WE-AAA0-06 17 76046315 76046315 C T TNRC6C Missense_Mutation p.S391F 0.40 deleterious(0) possibly_damaging(0.459) TCGA-WE-AAA0-06 17 76458992 76458992 C T DNAH17 Silent p.T3022T 0.14 TCGA-WE-AAA0-06 17 7704966 7704966 G A DNAH2 Missense_Mutation p.E2924K 0.36 benign(0.278) TCGA-WE-AAA0-06 17 77925332 77925332 G A TBC1D16 Missense_Mutation p.H336Y 0.15 deleterious(0) benign(0.021) TCGA-WE-AAA0-06 17 78264373 78264373 C T RNF213 Silent p.L373L 0.29 TCGA-WE-AAA0-06 17 78264402 78264402 C T RNF213 Silent p.F382F 0.20 TCGA-WE-AAA0-06 17 79792794 79792794 G A PPP1R27 Silent p.S12S 0.24 TCGA-WE-AAA0-06 17 8021190 8021190 C T ALOXE3 Missense_Mutation p.R172Q 0.18 tolerated(0.05) possibly_damaging(0.691) TCGA-WE-AAA0-06 17 80400439 80400439 G A HEXDC Missense_Mutation p.G577R 0.30 deleterious_low_confidence(0) benign(0.002) TCGA-WE-AAA0-06 18 22056917 22056917 C T HRH4 Silent p.I188I 0.31 TCGA-WE-AAA0-06 18 22057033 22057033 C T HRH4 Missense_Mutation p.S227L 0.26 tolerated(0.23) benign(0.006) TCGA-WE-AAA0-06 18 23854930 23854930 C T TAF4B Silent p.F265F 0.35 TCGA-WE-AAA0-06 18 24436349 24436349 G A AQP4 Silent p.F266F 0.29 TCGA-WE-AAA0-06 18 28605827 28605827 C T DSC3 Missense_Mutation p.G177R 0.27 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA0-06 18 28911750 28911750 G A DSG1 Missense_Mutation p.E202K 0.31 deleterious(0.01) possibly_damaging(0.61) TCGA-WE-AAA0-06 18 28913657 28913657 G A DSG1 Missense_Mutation p.D264N 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 18 28972164 28972164 G A DSG4 Missense_Mutation p.R289Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 18 28993527 28993527 G A DSG4 Missense_Mutation p.R1050Q 0.18 tolerated(0.34) benign(0.016) TCGA-WE-AAA0-06 18 29041361 29041361 C T DSG3 Silent p.L329L 0.18 TCGA-WE-AAA0-06 18 29104673 29104673 G A DSG2 Missense_Mutation p.G279E 0.27 tolerated(0.05) probably_damaging(0.945) TCGA-WE-AAA0-06 18 2923834 2923834 G A LPIN2 Missense_Mutation p.P705S 0.32 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 18 29691849 29691849 G A RNF138 Silent p.K81K 0.30 TCGA-WE-AAA0-06 18 29797810 29797810 C T MEP1B Missense_Mutation p.S658L 0.57 tolerated(0.26) benign(0.011) TCGA-WE-AAA0-06 18 30950043 30950043 C T CCDC178 Missense_Mutation p.E107K 0.20 deleterious(0) possibly_damaging(0.898) TCGA-WE-AAA0-06 18 31319749 31319749 G A ASXL3 Missense_Mutation p.G794E 0.32 benign(0.023) TCGA-WE-AAA0-06 18 31324985 31324985 G A ASXL3 Missense_Mutation p.D1725N 0.26 possibly_damaging(0.856) TCGA-WE-AAA0-06 18 33552766 33552766 C T C18orf21 Silent p.L25L 0.24 TCGA-WE-AAA0-06 18 33795546 33795546 C T MOCOS Missense_Mutation p.S468L 0.34 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 18 42533151 42533151 T G SETBP1 Missense_Mutation p.S1282R 0.26 tolerated(0.27) benign(0.425) TCGA-WE-AAA0-06 18 48252394 48252394 G A MAPK4 Missense_Mutation p.G306R 0.28 deleterious(0) possibly_damaging(0.864) TCGA-WE-AAA0-06 18 50936908 50936908 C T DCC Nonsense_Mutation p.Q1008* 0.31 TCGA-WE-AAA0-06 18 52937152 52937152 G A TCF4 Missense_Mutation p.P380S 0.24 deleterious(0.01) probably_damaging(0.963) TCGA-WE-AAA0-06 18 53017610 53017610 G A TCF4 Missense_Mutation p.P279S 0.30 deleterious(0.02) benign(0.259) TCGA-WE-AAA0-06 18 56204565 56204565 G A ALPK2 Missense_Mutation p.P952S 0.31 tolerated(1) benign(0) TCGA-WE-AAA0-06 18 56601734 56601734 C T ZNF532 Nonsense_Mutation p.Q806* 0.29 TCGA-WE-AAA0-06 18 57006020 57006020 C T LMAN1 Missense_Mutation p.G374E 0.26 deleterious(0.01) benign(0.342) TCGA-WE-AAA0-06 18 5891657 5891657 G A TMEM200C Missense_Mutation p.P136S 0.24 tolerated(0.08) probably_damaging(0.96) TCGA-WE-AAA0-06 18 59157865 59157865 G A CDH20 Missense_Mutation p.D27N 0.29 tolerated(0.29) benign(0.001) TCGA-WE-AAA0-06 18 61654488 61654488 C T SERPINB8 Silent p.F367F 0.17 TCGA-WE-AAA0-06 18 63489410 63489410 G A CDH7 Missense_Mutation p.G240E 0.30 deleterious(0) probably_damaging(0.993) TCGA-WE-AAA0-06 18 63511135 63511135 C T CDH7 Missense_Mutation p.P357S 0.14 tolerated(0.11) probably_damaging(0.979) TCGA-WE-AAA0-06 18 67614633 67614633 G A CD226 Missense_Mutation p.P4S 0.22 deleterious(0.03) benign(0.068) TCGA-WE-AAA0-06 18 7080006 7080006 G A LAMA1 Missense_Mutation p.H105Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 18 76753541 76753541 C T SALL3 Missense_Mutation p.P517L 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-WE-AAA0-06 18 77804258 77804258 G A RBFA Missense_Mutation p.R208K 0.24 tolerated(1) benign(0.002) TCGA-WE-AAA0-06 18 9258271 9258271 C T ANKRD12 Missense_Mutation p.P1669L 0.38 deleterious_low_confidence(0.03) benign(0.097) TCGA-WE-AAA0-06 19 10097010 10097010 G A COL5A3 Missense_Mutation p.P778L 0.28 unknown(0) TCGA-WE-AAA0-06 19 10106239 10106239 C T COL5A3 Splice_Site p.X529_splice 0.24 TCGA-WE-AAA0-06 19 10742309 10742309 G A SLC44A2 Silent p.R170R 0.29 TCGA-WE-AAA0-06 19 1084263 1084263 G A HMHA1 Silent p.E1010E 0.24 TCGA-WE-AAA0-06 19 11113737 11113737 C T SMARCA4 Silent p.L615L 0.21 TCGA-WE-AAA0-06 19 11118614 11118614 C T SMARCA4 Missense_Mutation p.P680S 0.24 benign(0.001) TCGA-WE-AAA0-06 19 11327602 11327602 G A DOCK6 Silent p.A1294A 0.20 TCGA-WE-AAA0-06 19 11625033 11625033 G A ECSIT Missense_Mutation p.P34S 0.50 tolerated(1) benign(0.002) TCGA-WE-AAA0-06 19 11796666 11796666 G A ZNF833P RNA 0.40 TCGA-WE-AAA0-06 19 11943292 11943292 G A ZNF440 Missense_Mutation p.R434K 0.27 tolerated(0.84) benign(0.324) TCGA-WE-AAA0-06 19 12384146 12384146 G C ZNF44 Silent p.P356P 0.25 TCGA-WE-AAA0-06 19 13226207 13226207 C T TRMT1 Missense_Mutation p.G176E 0.18 deleterious(0) possibly_damaging(0.688) TCGA-WE-AAA0-06 19 15233707 15233707 G T ILVBL Silent p.T200T 0.28 TCGA-WE-AAA0-06 19 15839207 15839207 G A OR10H2 Missense_Mutation p.M118I 0.30 deleterious(0) probably_damaging(0.993) TCGA-WE-AAA0-06 19 15904919 15904919 C T OR10H5 Missense_Mutation p.P21S 0.27 tolerated(0.06) possibly_damaging(0.505) TCGA-WE-AAA0-06 19 16003212 16003212 C T CYP4F2 Nonsense_Mutation p.W144* 0.27 TCGA-WE-AAA0-06 19 16178370 16178370 C T TPM4 5'UTR 0.32 TCGA-WE-AAA0-06 19 16639033 16639033 G A CHERP Missense_Mutation p.S388F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.854) TCGA-WE-AAA0-06 19 17015150 17015150 C T CPAMD8 Missense_Mutation p.M1426I 0.24 tolerated(0.08) probably_damaging(0.924) TCGA-WE-AAA0-06 19 17038852 17038852 G A CPAMD8 Missense_Mutation p.P1160S 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-WE-AAA0-06 19 17305660 17305660 C T MYO9B Missense_Mutation p.P1142S 0.23 tolerated(0.46) benign(0.005) TCGA-WE-AAA0-06 19 17691542 17691542 C T COLGALT1 Missense_Mutation p.P477S 0.20 tolerated(0.11) benign(0.158) TCGA-WE-AAA0-06 19 17895672 17895672 C T FCHO1 Nonsense_Mutation p.Q789* 0.27 TCGA-WE-AAA0-06 19 17942204 17942204 C T JAK3 Missense_Mutation p.M937I 0.27 deleterious(0) possibly_damaging(0.693) TCGA-WE-AAA0-06 19 18857919 18857919 G A CRTC1 Nonsense_Mutation p.W162* 0.31 TCGA-WE-AAA0-06 19 19653204 19653204 G A CILP2 Missense_Mutation p.E205K 0.28 tolerated(0.66) benign(0.001) TCGA-WE-AAA0-06 19 21205619 21205619 C T ZNF430 Missense_Mutation p.P10S 0.31 deleterious_low_confidence(0.02) benign(0.037) TCGA-WE-AAA0-06 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-WE-AAA0-06 19 22574580 22574580 C T ZNF98 Missense_Mutation p.G486E 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-WE-AAA0-06 19 22941025 22941025 C T ZNF99 Silent p.K562K 0.18 TCGA-WE-AAA0-06 19 23159144 23159144 C T ZNF728 Missense_Mutation p.R332K 0.24 tolerated(0.29) benign(0.006) TCGA-WE-AAA0-06 19 23159320 23159320 T C ZNF728 Silent p.E273E 0.24 TCGA-WE-AAA0-06 19 23405234 23405234 G A ZNF724P Missense_Mutation p.L605F 0.18 deleterious(0.05) benign(0.233) TCGA-WE-AAA0-06 19 23542337 23542337 G A ZNF91 Silent p.I1148I 0.22 TCGA-WE-AAA0-06 19 2850699 2850699 C T ZNF555 Silent p.L40L 0.14 TCGA-WE-AAA0-06 19 30312925 30312925 C T CCNE1 Missense_Mutation p.P243L 0.22 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 19 30935916 30935916 G T ZNF536 Missense_Mutation p.G483W 0.34 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 19 30935917 30935917 G A ZNF536 Missense_Mutation p.G483E 0.31 tolerated(0.26) possibly_damaging(0.894) TCGA-WE-AAA0-06 19 32973239 32973239 C T DPY19L3 3'UTR 0.35 TCGA-WE-AAA0-06 19 36211004 36211004 C T KMT2B Missense_Mutation p.P252L 0.55 unknown(0) TCGA-WE-AAA0-06 19 36228015 36228015 C T KMT2B Silent p.I2467I 0.25 TCGA-WE-AAA0-06 19 36290956 36290956 C T PRODH2 Missense_Mutation p.R532Q 0.24 tolerated_low_confidence(0.25) benign(0.103) TCGA-WE-AAA0-06 19 36321787 36321787 G A NPHS1 Missense_Mutation p.P1185S 0.33 tolerated(0.08) benign(0.205) TCGA-WE-AAA0-06 19 3643277 3643277 C T PIP5K1C Missense_Mutation p.R538Q 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.722) TCGA-WE-AAA0-06 19 3779071 3779071 G A MATK Silent p.G373G 0.17 TCGA-WE-AAA0-06 19 38138717 38138717 G A ZFP30 Missense_Mutation p.R3C 0.42 tolerated(0.08) benign(0.153) TCGA-WE-AAA0-06 19 39009873 39009873 G A RYR1 Silent p.V3346V 0.31 TCGA-WE-AAA0-06 19 3961144 3961144 G A DAPK3 Silent p.S215S 0.41 TCGA-WE-AAA0-06 19 39664235 39664235 C G PAK4 Missense_Mutation p.A228G 0.29 tolerated(0.38) benign(0.043) TCGA-WE-AAA0-06 19 39664236 39664236 C T PAK4 Silent p.A228A 0.32 TCGA-WE-AAA0-06 19 40424007 40424007 A T FCGBP Silent p.V732V 0.22 TCGA-WE-AAA0-06 19 40424277 40424277 C T FCGBP Silent p.L642L 0.25 TCGA-WE-AAA0-06 19 41444953 41444953 C T CYP2B7P RNA 0.25 TCGA-WE-AAA0-06 19 41444954 41444954 C T CYP2B7P RNA 0.24 TCGA-WE-AAA0-06 19 42133283 42133283 C T CEACAM4 Missense_Mutation p.G17R 0.32 tolerated(0.29) benign(0.401) TCGA-WE-AAA0-06 19 42480658 42480658 G A ATP1A3 Silent p.I681I 0.28 TCGA-WE-AAA0-06 19 42482398 42482398 C T ATP1A3 Missense_Mutation p.D584N 0.38 tolerated(0.15) benign(0.001) TCGA-WE-AAA0-06 19 42737340 42737340 G A GSK3A Silent p.T340T 0.30 TCGA-WE-AAA0-06 19 43411248 43411248 C T PSG6 Missense_Mutation p.D356N 0.27 tolerated(0.21) benign(0.11) TCGA-WE-AAA0-06 19 43708141 43708141 G A PSG4 Silent p.I109I 0.29 TCGA-WE-AAA0-06 19 43708325 43708325 C T PSG4 Missense_Mutation p.G48E 0.27 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 19 44376722 44376722 C T ZNF404 Silent p.E548E 0.27 TCGA-WE-AAA0-06 19 44660803 44660803 G A ZNF234 Missense_Mutation p.E212K 0.28 tolerated(0.71) benign(0.097) TCGA-WE-AAA0-06 19 45033496 45033496 C T CEACAM20 RNA 0.21 TCGA-WE-AAA0-06 19 45489760 45489760 C T CLPTM1 Silent p.P240P 0.21 TCGA-WE-AAA0-06 19 45716480 45716480 G A EXOC3L2 Silent p.F359F 0.34 TCGA-WE-AAA0-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.31 TCGA-WE-AAA0-06 19 46375856 46375856 G A FOXA3 Missense_Mutation p.G198E 0.29 deleterious(0) probably_damaging(0.976) TCGA-WE-AAA0-06 19 46915099 46915099 G A CCDC8 Silent p.A323A 0.23 TCGA-WE-AAA0-06 19 47912504 47912504 C T MEIS3 Missense_Mutation p.G237E 0.31 deleterious(0.02) probably_damaging(0.973) TCGA-WE-AAA0-06 19 48386909 48386909 C T SULT2A1 Silent p.T90T 0.23 TCGA-WE-AAA0-06 19 49344540 49344540 C T PLEKHA4 Missense_Mutation p.A591T 0.33 deleterious(0.01) benign(0.016) TCGA-WE-AAA0-06 19 49671250 49671250 C T TRPM4 Missense_Mutation p.P115L 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 19 49674893 49674893 G A TRPM4 Missense_Mutation p.G306E 0.34 deleterious(0) probably_damaging(0.95) TCGA-WE-AAA0-06 19 50303023 50303023 C T AP2A1 Silent p.I424I 0.27 TCGA-WE-AAA0-06 19 50548973 50548973 C T ZNF473 Missense_Mutation p.H425Y 0.24 deleterious(0) possibly_damaging(0.684) TCGA-WE-AAA0-06 19 51379917 51379917 C T KLK2 Silent p.I132I 0.23 TCGA-WE-AAA0-06 19 51532530 51532530 G A KLK12 Intron 0.25 TCGA-WE-AAA0-06 19 51981793 51981793 G A CEACAM18 Missense_Mutation p.R27Q 0.42 tolerated_low_confidence(0.64) benign(0) TCGA-WE-AAA0-06 19 52003455 52003455 G A SIGLEC12 Missense_Mutation p.P176L 0.28 deleterious(0) possibly_damaging(0.806) TCGA-WE-AAA0-06 19 52327243 52327243 G A FPR3 Missense_Mutation p.R81Q 0.17 tolerated(0.24) benign(0.001) TCGA-WE-AAA0-06 19 52375755 52375755 G A ZNF577 3'UTR 0.33 TCGA-WE-AAA0-06 19 52537254 52537254 G A ZNF432 Nonsense_Mutation p.Q560* 0.30 TCGA-WE-AAA0-06 19 53573231 53573231 G A ZNF160 Missense_Mutation p.H186Y 0.21 tolerated(0.05) benign(0.14) TCGA-WE-AAA0-06 19 53576506 53576506 A C ZNF160 Intron 0.22 TCGA-WE-AAA0-06 19 53643472 53643472 A T ZNF347 3'UTR 0.32 TCGA-WE-AAA0-06 19 53667893 53667893 C A ZNF665 Missense_Mutation p.R617I 0.25 deleterious(0.05) possibly_damaging(0.583) TCGA-WE-AAA0-06 19 53770141 53770141 C T VN1R4 Missense_Mutation p.D260N 0.37 tolerated(1) benign(0.003) TCGA-WE-AAA0-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.21 TCGA-WE-AAA0-06 19 54238146 54238146 C T MIR518D RNA 0.16 TCGA-WE-AAA0-06 19 54376848 54376848 C T MYADM Missense_Mutation p.S22F 0.26 deleterious(0.02) benign(0.002) TCGA-WE-AAA0-06 19 54783463 54783463 G A LILRB2 Missense_Mutation p.P132L 0.30 deleterious(0.04) possibly_damaging(0.448) TCGA-WE-AAA0-06 19 54818763 54818763 G A LILRA5 Missense_Mutation p.L279F 0.32 deleterious(0.02) benign(0.214) TCGA-WE-AAA0-06 19 54848358 54848358 C T LILRA4 Missense_Mutation p.G337R 0.23 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 19 54849856 54849856 G A LILRA4 Nonsense_Mutation p.Q56* 0.27 TCGA-WE-AAA0-06 19 55294989 55294989 A T KIR2DL1 Missense_Mutation p.E290V 0.31 deleterious(0.03) benign(0.316) TCGA-WE-AAA0-06 19 55329913 55329913 C T KIR3DL1 Missense_Mutation p.H72Y 0.23 tolerated(0.41) benign(0.004) TCGA-WE-AAA0-06 19 55399497 55399497 G A FCAR Missense_Mutation p.G162E 0.33 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 19 55481428 55481428 G A NLRP2 Silent p.L15L 0.15 TCGA-WE-AAA0-06 19 56363684 56363684 G A NLRP4 Missense_Mutation p.D80N 0.32 tolerated(1) benign(0.002) TCGA-WE-AAA0-06 19 56435316 56435316 G A NLRP13 Missense_Mutation p.P163S 0.22 tolerated(0.09) possibly_damaging(0.5) TCGA-WE-AAA0-06 19 56515259 56515259 C T NLRP5 Silent p.F80F 0.22 TCGA-WE-AAA0-06 19 56614417 56614417 G A ZNF787 Intron 0.21 TCGA-WE-AAA0-06 19 56614418 56614418 G A ZNF787 Intron 0.21 TCGA-WE-AAA0-06 19 57176260 57176260 C T ZNF835 Missense_Mutation p.G103S 0.37 tolerated(0.45) benign(0.017) TCGA-WE-AAA0-06 19 57326886 57326886 C T PEG3 Missense_Mutation p.G975E 0.27 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 19 57646286 57646286 C T ZIM3 Silent p.%3D 0.29 TCGA-WE-AAA0-06 19 57889353 57889353 T G ZNF547 Missense_Mutation p.S337A 0.22 tolerated(0.1) possibly_damaging(0.48) TCGA-WE-AAA0-06 19 57889354 57889354 C T ZNF547 Missense_Mutation p.S337F 0.22 tolerated(0.07) possibly_damaging(0.716) TCGA-WE-AAA0-06 19 57967782 57967782 C T VN1R1 Missense_Mutation p.D25N 0.21 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-WE-AAA0-06 19 58101781 58101781 G A ZIK1 Missense_Mutation p.G201E 0.21 tolerated(0.6) benign(0.002) TCGA-WE-AAA0-06 19 58101782 58101782 G A ZIK1 Silent p.G201G 0.21 TCGA-WE-AAA0-06 19 58198242 58198242 C T ZNF551 Missense_Mutation p.P200L 0.30 tolerated(0.65) benign(0.321) TCGA-WE-AAA0-06 19 58262237 58262237 C T AC003006.7 Missense_Mutation p.H40Y 0.26 tolerated(0.66) possibly_damaging(0.844) TCGA-WE-AAA0-06 19 58453352 58453352 G A ZNF256 Missense_Mutation p.S275F 0.28 tolerated(0.07) probably_damaging(0.976) TCGA-WE-AAA0-06 19 58491535 58491535 G C ZNF606 Missense_Mutation p.F171L 0.25 tolerated(0.67) benign(0.001) TCGA-WE-AAA0-06 19 6467044 6467044 C T CRB3 3'UTR 0.24 TCGA-WE-AAA0-06 19 6857072 6857072 G A VAV1 Nonsense_Mutation p.W831* 0.45 TCGA-WE-AAA0-06 19 7830630 7830630 C T CLEC4M Silent p.S107S 0.32 TCGA-WE-AAA0-06 19 8601261 8601261 C T MYO1F Missense_Mutation p.E640K 0.29 tolerated(0.54) benign(0.027) TCGA-WE-AAA0-06 19 8601843 8601843 C T MYO1F Missense_Mutation p.E597K 0.20 deleterious(0.01) possibly_damaging(0.868) TCGA-WE-AAA0-06 19 8976784 8976784 C T MUC16 Silent p.K14094K 0.38 TCGA-WE-AAA0-06 19 8987074 8987074 C T MUC16 Silent p.R13972R 0.31 TCGA-WE-AAA0-06 19 9006404 9006404 G A MUC16 Missense_Mutation p.P13205L 0.13 probably_damaging(0.976) TCGA-WE-AAA0-06 19 9006405 9006405 G A MUC16 Missense_Mutation p.P13205S 0.13 probably_damaging(0.983) TCGA-WE-AAA0-06 19 9028329 9028329 G A MUC16 Missense_Mutation p.L12155F 0.26 possibly_damaging(0.763) TCGA-WE-AAA0-06 19 9049903 9049903 C T MUC16 Silent p.G10576G 0.32 TCGA-WE-AAA0-06 19 9056979 9056979 C T MUC16 Missense_Mutation p.G10156E 0.42 benign(0.007) TCGA-WE-AAA0-06 19 9060965 9060965 C T MUC16 Silent p.G8827G 0.25 TCGA-WE-AAA0-06 19 9068159 9068159 G A MUC16 Silent p.T6429T 0.30 TCGA-WE-AAA0-06 19 9071162 9071162 C T MUC16 Silent p.G5428G 0.28 TCGA-WE-AAA0-06 19 9074518 9074518 G A MUC16 Nonsense_Mutation p.Q4310* 0.26 TCGA-WE-AAA0-06 19 9075541 9075541 G A MUC16 Missense_Mutation p.P3969S 0.17 unknown(0) TCGA-WE-AAA0-06 19 9076033 9076033 G A MUC16 Missense_Mutation p.P3805S 0.21 unknown(0) TCGA-WE-AAA0-06 19 9083059 9083059 T G MUC16 Missense_Mutation p.D2919A 0.30 unknown(0) TCGA-WE-AAA0-06 19 9088679 9088679 A T MUC16 Missense_Mutation p.Y1046N 0.34 unknown(0) TCGA-WE-AAA0-06 19 9088779 9088779 A T MUC16 Silent p.T1012T 0.31 TCGA-WE-AAA0-06 19 9089115 9089115 G A MUC16 Silent p.T900T 0.29 TCGA-WE-AAA0-06 19 9226411 9226411 G A OR7G1 Missense_Mutation p.S10L 0.32 tolerated(0.1) benign(0.012) TCGA-WE-AAA0-06 1 101186280 101186280 G A VCAM1 Missense_Mutation p.E105K 0.30 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 102302530 102302530 G A OLFM3 Missense_Mutation p.P41S 0.48 tolerated(0.6) benign(0.004) TCGA-WE-AAA0-06 1 103347287 103347287 C T COL11A1 Missense_Mutation p.G1669E 0.27 unknown(0) TCGA-WE-AAA0-06 1 103364234 103364234 G A COL11A1 Silent p.I1412I 0.21 TCGA-WE-AAA0-06 1 108291676 108291676 G A VAV3 Silent p.I472I 0.19 TCGA-WE-AAA0-06 1 108417562 108417562 G A VAV3 Silent p.F94F 0.27 TCGA-WE-AAA0-06 1 109883380 109883380 G A SORT1 Silent p.L410L 0.15 TCGA-WE-AAA0-06 1 110086039 110086039 C T GPR61 Missense_Mutation p.S132L 0.42 deleterious(0) possibly_damaging(0.835) TCGA-WE-AAA0-06 1 110582081 110582081 C T STRIP1 Silent p.L175L 0.14 TCGA-WE-AAA0-06 1 111215965 111215965 C T KCNA3 Silent p.R489R 0.49 TCGA-WE-AAA0-06 1 111860632 111860632 G A CHIA Missense_Mutation p.M210I 0.17 deleterious(0) possibly_damaging(0.662) TCGA-WE-AAA0-06 1 111889232 111889232 C T PIFO 5'UTR 0.52 TCGA-WE-AAA0-06 1 113159445 113159445 C T ST7L Missense_Mutation p.G93E 0.43 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 113237211 113237211 C T MOV10 Missense_Mutation p.P478S 0.34 tolerated(1) benign(0) TCGA-WE-AAA0-06 1 115418717 115418717 C T SYCP1 Missense_Mutation p.R229C 0.45 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 115576841 115576841 C T TSHB Missense_Mutation p.S137F 0.14 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-WE-AAA0-06 1 115600166 115600166 C T TSPAN2 Missense_Mutation p.G170R 0.46 tolerated(0.67) benign(0.001) TCGA-WE-AAA0-06 1 115829018 115829018 G A NGF Silent p.F133F 0.52 TCGA-WE-AAA0-06 1 11718605 11718605 C T FBXO44 Silent p.S136S 0.42 TCGA-WE-AAA0-06 1 118065521 118065521 C T MAN1A2 Missense_Mutation p.P623L 0.25 tolerated(0.07) possibly_damaging(0.756) TCGA-WE-AAA0-06 1 12090095 12090095 C T MIIP Missense_Mutation p.P286S 0.21 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 12393322 12393322 C T VPS13D Missense_Mutation p.S2776F 0.39 benign(0.12) TCGA-WE-AAA0-06 1 12409291 12409291 G A VPS13D Silent p.R3097R 0.25 TCGA-WE-AAA0-06 1 12567120 12567120 C T VPS13D Silent p.I4336I 0.20 TCGA-WE-AAA0-06 1 12856119 12856119 G A PRAMEF1 Missense_Mutation p.E467K 0.15 tolerated(0.38) possibly_damaging(0.54) TCGA-WE-AAA0-06 1 12887625 12887625 C T PRAMEF11 Missense_Mutation p.E78K 0.39 deleterious(0.02) possibly_damaging(0.648) TCGA-WE-AAA0-06 1 12979744 12979744 C T PRAMEF7 Silent p.L312L 0.18 TCGA-WE-AAA0-06 1 13036760 13036760 A T PRAMEF22 Missense_Mutation p.R278W 0.55 deleterious(0.01) possibly_damaging(0.773) TCGA-WE-AAA0-06 1 13448297 13448297 G A PRAMEF13 Missense_Mutation p.A393V 0.25 tolerated(1) benign(0.139) TCGA-WE-AAA0-06 1 13474859 13474859 G A PRAMEF18 Missense_Mutation p.R424C 0.28 tolerated(0.18) possibly_damaging(0.631) TCGA-WE-AAA0-06 1 13936943 13936943 G A PDPN Missense_Mutation p.S164N 0.25 tolerated(0.07) benign(0.013) TCGA-WE-AAA0-06 1 145561956 145561956 G A ANKRD35 Silent p.L548L 0.52 TCGA-WE-AAA0-06 1 147095800 147095800 C T BCL9 Silent p.V1107V 0.47 TCGA-WE-AAA0-06 1 149898371 149898371 G A SF3B4 Silent p.L201L 0.24 TCGA-WE-AAA0-06 1 150923443 150923443 T A SETDB1 Missense_Mutation p.I697N 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 1 150923461 150923461 C T SETDB1 Missense_Mutation p.P703L 0.23 tolerated(0.08) probably_damaging(1) TCGA-WE-AAA0-06 1 152128022 152128022 C T RPTN Missense_Mutation p.G518D 0.19 tolerated(0.22) benign(0.177) TCGA-WE-AAA0-06 1 152323966 152323966 C T FLG2 Missense_Mutation p.G2099E 0.40 probably_damaging(0.981) TCGA-WE-AAA0-06 1 152329021 152329021 G A FLG2 Missense_Mutation p.S414F 0.21 unknown(0) TCGA-WE-AAA0-06 1 152331259 152331259 C T FLG2 Silent p.K34K 0.39 TCGA-WE-AAA0-06 1 152784905 152784905 C T LCE1B 5'UTR 0.16 TCGA-WE-AAA0-06 1 152884104 152884104 C T IVL 3'UTR 0.29 TCGA-WE-AAA0-06 1 153029126 153029126 G A SPRR2A Missense_Mutation p.P29L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-WE-AAA0-06 1 153177505 153177505 C T LELP1 3'UTR 0.33 TCGA-WE-AAA0-06 1 153333119 153333119 G A S100A9 Splice_Site p.X51_splice 0.43 TCGA-WE-AAA0-06 1 153924661 153924661 T C CRTC2 Missense_Mutation p.D277G 0.49 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 154932068 154932068 G A PYGO2 Silent p.F136F 0.41 TCGA-WE-AAA0-06 1 154960646 154960646 T A FLAD1 Silent p.V146V 0.43 TCGA-WE-AAA0-06 1 156177759 156177759 C T SLC25A44 Silent p.A236A 0.42 TCGA-WE-AAA0-06 1 156278905 156278905 G C CCT3 3'UTR 0.48 TCGA-WE-AAA0-06 1 156565481 156565481 C T GPATCH4 Missense_Mutation p.E218K 0.21 tolerated(0.35) benign(0.091) TCGA-WE-AAA0-06 1 156639068 156639068 C T NES 3'UTR 0.33 TCGA-WE-AAA0-06 1 156642099 156642099 G A NES Silent p.S627S 0.18 TCGA-WE-AAA0-06 1 156702140 156702140 C G RRNAD1 Missense_Mutation p.R102G 0.16 deleterious(0) possibly_damaging(0.869) TCGA-WE-AAA0-06 1 157514852 157514852 G A FCRL5 Missense_Mutation p.P110S 0.40 deleterious(0.04) probably_damaging(0.98) TCGA-WE-AAA0-06 1 157767609 157767609 T G FCRL1 Intron 0.21 TCGA-WE-AAA0-06 1 15783625 15783625 G T CELA2A Missense_Mutation p.V29L 0.52 deleterious(0.01) benign(0.092) TCGA-WE-AAA0-06 1 158225089 158225089 A T CD1A Missense_Mutation p.I92F 0.27 tolerated(0.34) benign(0.156) TCGA-WE-AAA0-06 1 158369106 158369106 G A OR10T2 Missense_Mutation p.R51C 0.17 tolerated(0.3) benign(0.002) TCGA-WE-AAA0-06 1 158614069 158614069 C T SPTA1 Missense_Mutation p.D1438N 0.39 tolerated(0.06) probably_damaging(0.92) TCGA-WE-AAA0-06 1 158687414 158687414 G A OR6K3 Silent p.S164S 0.43 TCGA-WE-AAA0-06 1 158736155 158736155 G A OR6N1 Silent p.S106S 0.20 TCGA-WE-AAA0-06 1 158736437 158736437 G A OR6N1 Silent p.F12F 0.21 TCGA-WE-AAA0-06 1 159163772 159163772 G A CADM3 Silent p.V245V 0.34 TCGA-WE-AAA0-06 1 159170746 159170746 C T CADM3 3'UTR 0.38 TCGA-WE-AAA0-06 1 159174748 159174748 C T DARC 5'Flank 0.16 TCGA-WE-AAA0-06 1 159275833 159275833 C T FCER1A Silent p.F129F 0.23 TCGA-WE-AAA0-06 1 159283808 159283808 C T OR10J3 Silent p.L214L 0.26 TCGA-WE-AAA0-06 1 159410397 159410397 G A OR10J1 Silent p.L283L 0.25 TCGA-WE-AAA0-06 1 15987841 15987841 C T RSC1A1 Missense_Mutation p.S493L 0.36 tolerated(0.13) possibly_damaging(0.804) TCGA-WE-AAA0-06 1 160011923 160011923 G A KCNJ10 Missense_Mutation p.R134C 0.39 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 16054295 16054295 C T PLEKHM2 Silent p.S576S 0.27 TCGA-WE-AAA0-06 1 16054296 16054296 C T PLEKHM2 Missense_Mutation p.P577S 0.27 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 16064722 16064722 C T SLC25A34 Silent p.A193A 0.35 TCGA-WE-AAA0-06 1 16069635 16069635 C G TMEM82 Silent p.L94L 0.45 TCGA-WE-AAA0-06 1 160783601 160783601 C T LY9 Silent p.S210S 0.39 TCGA-WE-AAA0-06 1 160851040 160851040 G A ITLN1 Silent p.S156S 0.15 TCGA-WE-AAA0-06 1 160920943 160920943 G A ITLN2 Missense_Mutation p.R111C 0.33 tolerated(0.06) benign(0.258) TCGA-WE-AAA0-06 1 161196322 161196322 C T TOMM40L Missense_Mutation p.R15C 0.62 deleterious(0.05) possibly_damaging(0.551) TCGA-WE-AAA0-06 1 162381834 162381834 C T SH2D1B 5'UTR 0.21 TCGA-WE-AAA0-06 1 16259039 16259039 C T SPEN Missense_Mutation p.P2102S 0.46 benign(0.002) TCGA-WE-AAA0-06 1 16259040 16259040 C T SPEN Missense_Mutation p.P2102L 0.46 benign(0.05) TCGA-WE-AAA0-06 1 162824657 162824657 C T C1orf110 Silent p.R269R 0.19 TCGA-WE-AAA0-06 1 16373073 16373073 C G CLCNKB Silent p.L91L 0.31 TCGA-WE-AAA0-06 1 16373074 16373074 C T CLCNKB Missense_Mutation p.R92W 0.31 deleterious(0) possibly_damaging(0.507) TCGA-WE-AAA0-06 1 166888551 166888551 C T ILDR2 3'UTR 0.46 TCGA-WE-AAA0-06 1 166888552 166888552 C T ILDR2 3'UTR 0.46 TCGA-WE-AAA0-06 1 16945675 16945675 G A RP5-1182A14.5 3'Flank 0.03 TCGA-WE-AAA0-06 1 169581470 169581470 C T SELP Missense_Mutation p.A316T 0.32 tolerated(0.32) benign(0.007) TCGA-WE-AAA0-06 1 169582836 169582836 C T SELP Missense_Mutation p.E193K 0.24 deleterious(0.01) possibly_damaging(0.796) TCGA-WE-AAA0-06 1 17084286 17084286 C T MST1L RNA 0.06 TCGA-WE-AAA0-06 1 171076882 171076882 G A FMO3 Missense_Mutation p.E130K 0.56 deleterious(0.04) benign(0.084) TCGA-WE-AAA0-06 1 171765941 171765941 C T METTL13 3'UTR 0.18 TCGA-WE-AAA0-06 1 172628289 172628289 G T FASLG 5'UTR 0.39 TCGA-WE-AAA0-06 1 175292545 175292545 G A TNR Missense_Mutation p.P1342L 0.48 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 175355286 175355286 C T TNR Silent p.Q553Q 0.42 TCGA-WE-AAA0-06 1 175375497 175375497 G A TNR Silent p.I118I 0.19 TCGA-WE-AAA0-06 1 176526115 176526115 C T PAPPA2 Silent p.F219F 0.34 TCGA-WE-AAA0-06 1 17657608 17657608 G A PADI4 Silent p.T79T 0.33 TCGA-WE-AAA0-06 1 177249620 177249620 C T BRINP2 Silent p.F436F 0.24 TCGA-WE-AAA0-06 1 177899697 177899697 G A SEC16B Missense_Mutation p.P1032S 0.14 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 1 179354495 179354495 G A AXDND1 Splice_Site p.X288_splice 0.41 TCGA-WE-AAA0-06 1 181741317 181741317 G A CACNA1E Missense_Mutation p.D1697N 0.15 tolerated(0.08) possibly_damaging(0.831) TCGA-WE-AAA0-06 1 182026915 182026915 C T ZNF648 Silent p.E77E 0.26 TCGA-WE-AAA0-06 1 183086480 183086480 G A LAMC1 Silent p.Q530Q 0.15 TCGA-WE-AAA0-06 1 183184697 183184697 G A LAMC2 Silent p.A126A 0.17 TCGA-WE-AAA0-06 1 183184701 183184701 T G LAMC2 Missense_Mutation p.C128G 0.19 deleterious(0) possibly_damaging(0.864) TCGA-WE-AAA0-06 1 183514244 183514244 C T SMG7 Missense_Mutation p.P677S 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-AAA0-06 1 183542340 183542340 C T NCF2 Missense_Mutation p.D197N 0.23 deleterious(0.04) possibly_damaging(0.591) TCGA-WE-AAA0-06 1 190067531 190067531 C T BRINP3 Missense_Mutation p.G640S 0.17 tolerated(1) benign(0.162) TCGA-WE-AAA0-06 1 190129941 190129941 C T BRINP3 Missense_Mutation p.M347I 0.17 tolerated(0.23) benign(0.001) TCGA-WE-AAA0-06 1 19464520 19464520 C T UBR4 Missense_Mutation p.D2963N 0.50 probably_damaging(0.909) TCGA-WE-AAA0-06 1 19566788 19566788 C T EMC1 Intron 0.33 TCGA-WE-AAA0-06 1 196451461 196451461 C T KCNT2 Silent p.Q108Q 0.20 TCGA-WE-AAA0-06 1 196646735 196646735 G A CFH Missense_Mutation p.G186E 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-WE-AAA0-06 1 196883686 196883686 G A CFHR4 Silent p.K413K 0.15 TCGA-WE-AAA0-06 1 196977851 196977851 C T CFHR5 3'UTR 0.48 TCGA-WE-AAA0-06 1 197008410 197008410 G A F13B 3'UTR 0.11 TCGA-WE-AAA0-06 1 197404730 197404730 G A CRB1 Missense_Mutation p.G1246E 0.35 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 1 200017433 200017433 G A NR5A2 Silent p.V199V 0.17 TCGA-WE-AAA0-06 1 200143349 200143349 C T NR5A2 3'UTR 0.17 TCGA-WE-AAA0-06 1 201012493 201012493 G A CACNA1S Missense_Mutation p.P1655L 0.44 deleterious_low_confidence(0.02) benign(0.03) TCGA-WE-AAA0-06 1 201047150 201047150 G A CACNA1S Silent p.F492F 0.18 TCGA-WE-AAA0-06 1 201054709 201054709 C T CACNA1S Silent p.G335G 0.36 TCGA-WE-AAA0-06 1 201869880 201869880 C T LMOD1 Splice_Site p.X88_splice 0.38 TCGA-WE-AAA0-06 1 202911240 202911240 G A ADIPOR1 Silent p.F304F 0.20 TCGA-WE-AAA0-06 1 202913007 202913007 G A ADIPOR1 Silent p.F228F 0.12 TCGA-WE-AAA0-06 1 203053847 203053847 C T MYOG Missense_Mutation p.E161K 0.79 tolerated(0.18) benign(0.015) TCGA-WE-AAA0-06 1 203097929 203097929 C T ADORA1 5'UTR 0.19 TCGA-WE-AAA0-06 1 203830734 203830734 C T SNRPE 5'Flank 0.67 TCGA-WE-AAA0-06 1 204921230 204921230 G A NFASC Silent p.G67G 0.27 TCGA-WE-AAA0-06 1 205027194 205027194 G A CNTN2 Splice_Site p.X72_splice 0.20 TCGA-WE-AAA0-06 1 205500533 205500533 G A CDK18 3'UTR 0.20 TCGA-WE-AAA0-06 1 205632034 205632034 G A SLC45A3 Silent p.F295F 0.45 TCGA-WE-AAA0-06 1 206772870 206772870 G A EIF2D Silent p.P383P 0.24 TCGA-WE-AAA0-06 1 207196418 207196418 G A C1orf116 Missense_Mutation p.H231Y 0.12 tolerated(0.14) possibly_damaging(0.663) TCGA-WE-AAA0-06 1 207510696 207510696 C T CD55 Silent p.S334S 0.17 TCGA-WE-AAA0-06 1 207644362 207644362 G A CR2 Missense_Mutation p.G475R 0.48 deleterious(0.01) possibly_damaging(0.771) TCGA-WE-AAA0-06 1 207644826 207644826 G A CR2 Missense_Mutation p.E518K 0.42 deleterious(0.03) benign(0.122) TCGA-WE-AAA0-06 1 207785044 207785044 C T CR1 Silent p.I2106I 0.17 TCGA-WE-AAA0-06 1 210415607 210415607 G A SERTAD4 Nonsense_Mutation p.W332* 0.47 TCGA-WE-AAA0-06 1 214169816 214169816 C T PROX1 5'UTR 0.32 TCGA-WE-AAA0-06 1 214169817 214169817 C T PROX1 5'UTR 0.32 TCGA-WE-AAA0-06 1 216073559 216073559 C G USH2A Missense_Mutation p.E2484D 0.35 benign(0.02) TCGA-WE-AAA0-06 1 220236218 220236218 C G BPNT1 Missense_Mutation p.V185L 0.33 tolerated(0.34) benign(0.001) TCGA-WE-AAA0-06 1 223567621 223567621 G A C1orf65 Silent p.K268K 0.45 TCGA-WE-AAA0-06 1 227843062 227843062 C T ZNF678 Missense_Mutation p.H371Y 0.20 deleterious(0.01) possibly_damaging(0.901) TCGA-WE-AAA0-06 1 231556858 231556858 G A EGLN1 Silent p.I259I 0.42 TCGA-WE-AAA0-06 1 231906747 231906747 C T DISC1 Missense_Mutation p.A522V 0.41 deleterious(0) probably_damaging(0.941) TCGA-WE-AAA0-06 1 2333635 2333635 C T RER1 Intron 0.41 TCGA-WE-AAA0-06 1 233507783 233507783 G A MLK4 Splice_Site p.X518_splice 0.37 TCGA-WE-AAA0-06 1 233515081 233515081 C T MLK4 Missense_Mutation p.P777S 0.20 tolerated(0.08) benign(0.01) TCGA-WE-AAA0-06 1 233515258 233515258 C T MLK4 Missense_Mutation p.P836S 0.21 deleterious(0.02) benign(0.079) TCGA-WE-AAA0-06 1 240370567 240370567 T A FMN2 Missense_Mutation p.S819T 0.29 unknown(0) TCGA-WE-AAA0-06 1 241799111 241799111 A G CHML 5'UTR 0.33 TCGA-WE-AAA0-06 1 244716031 244716031 G A C1orf101 Missense_Mutation p.R315K 0.32 tolerated(1) benign(0.002) TCGA-WE-AAA0-06 1 245245433 245245433 C T EFCAB2 Missense_Mutation p.P78S 0.29 deleterious(0) probably_damaging(0.955) TCGA-WE-AAA0-06 1 247588084 247588084 C T NLRP3 Missense_Mutation p.L447F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-WE-AAA0-06 1 247655020 247655020 G A OR2W5 RNA 0.27 TCGA-WE-AAA0-06 1 247902330 247902330 C T OR14K1 Silent p.L138L 0.33 TCGA-WE-AAA0-06 1 248004394 248004394 C T OR11L1 Missense_Mutation p.E269K 0.44 tolerated(0.37) probably_damaging(0.961) TCGA-WE-AAA0-06 1 248023993 248023993 G A TRIM58 Silent p.G165G 0.28 TCGA-WE-AAA0-06 1 248262874 248262874 C T OR2L13 Missense_Mutation p.S66F 0.29 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 1 248308722 248308722 C T OR2M5 Silent p.S91S 0.33 TCGA-WE-AAA0-06 1 24932130 24932130 G A NCMAP Silent p.K67K 0.43 TCGA-WE-AAA0-06 1 24932131 24932131 G A NCMAP Missense_Mutation p.G68S 0.42 tolerated(1) benign(0.003) TCGA-WE-AAA0-06 1 26691231 26691231 G A ZNF683 Missense_Mutation p.S269F 0.44 deleterious(0.03) benign(0.258) TCGA-WE-AAA0-06 1 27332836 27332836 G T FAM46B Silent p.R293R 0.39 TCGA-WE-AAA0-06 1 27332837 27332837 G A FAM46B Silent p.P292P 0.41 TCGA-WE-AAA0-06 1 28764857 28764857 G A PHACTR4 5'UTR 0.28 TCGA-WE-AAA0-06 1 2939132 2939132 C T ACTRT2 Silent p.I294I 0.50 TCGA-WE-AAA0-06 1 2939253 2939253 C T ACTRT2 Missense_Mutation p.P335S 0.52 deleterious(0.03) benign(0.168) TCGA-WE-AAA0-06 1 32745596 32745596 G A LCK Splice_Site p.X399_splice 0.45 TCGA-WE-AAA0-06 1 3329151 3329151 C T PRDM16 Missense_Mutation p.S797F 0.67 deleterious(0) benign(0.344) TCGA-WE-AAA0-06 1 3329152 3329152 C T PRDM16 Silent p.S797S 0.67 TCGA-WE-AAA0-06 1 33960405 33960405 C T ZSCAN20 Missense_Mutation p.P821S 0.22 deleterious(0.04) benign(0.004) TCGA-WE-AAA0-06 1 3397058 3397058 C T ARHGEF16 Silent p.F679F 0.59 TCGA-WE-AAA0-06 1 34015839 34015839 C T CSMD2 Missense_Mutation p.G2808E 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-WE-AAA0-06 1 34166237 34166237 C T CSMD2 Missense_Mutation p.G1165R 0.22 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 1 34192262 34192262 G A CSMD2 Missense_Mutation p.S758L 0.25 deleterious(0) benign(0.212) TCGA-WE-AAA0-06 1 34329789 34329789 G A HMGB4 5'UTR 0.24 TCGA-WE-AAA0-06 1 36358818 36358818 C T AGO1 Missense_Mutation p.P151S 0.20 tolerated(0.22) benign(0.027) TCGA-WE-AAA0-06 1 38226938 38226938 C G EPHA10 Intron 0.55 TCGA-WE-AAA0-06 1 38226943 38226943 C T EPHA10 Intron 0.53 TCGA-WE-AAA0-06 1 40960707 40960707 C T ZFP69 Missense_Mutation p.S186F 0.18 deleterious(0.04) probably_damaging(0.959) TCGA-WE-AAA0-06 1 41012620 41012620 C T ZNF684 Missense_Mutation p.H209Y 0.22 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 1 41979247 41979247 G A HIVEP3 Missense_Mutation p.P1882L 0.22 benign(0.322) TCGA-WE-AAA0-06 1 42046800 42046800 G A HIVEP3 Silent p.F1223F 0.18 TCGA-WE-AAA0-06 1 43777978 43777978 C T TIE1 Missense_Mutation p.P545S 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-WE-AAA0-06 1 44595741 44595741 C T KLF17 Silent p.S266S 0.29 TCGA-WE-AAA0-06 1 46083144 46083144 G A NASP Missense_Mutation p.E723K 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-WE-AAA0-06 1 46087052 46087052 C T CCDC17 Missense_Mutation p.R430K 0.38 tolerated(0.41) benign(0.038) TCGA-WE-AAA0-06 1 46159246 46159246 C T TMEM69 Missense_Mutation p.S138F 0.42 deleterious(0) benign(0.081) TCGA-WE-AAA0-06 1 46715692 46715692 C A RAD54L Silent p.S37S 0.22 TCGA-WE-AAA0-06 1 46763956 46763956 C T LRRC41 Missense_Mutation p.G96S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 1 46976704 46976704 G A DMBX1 Missense_Mutation p.G144E 0.20 tolerated(0.31) benign(0.003) TCGA-WE-AAA0-06 1 47400193 47400193 C T CYP4A11 Missense_Mutation p.E277K 0.35 tolerated(0.08) benign(0.11) TCGA-WE-AAA0-06 1 47533275 47533275 G A CYP4Z1 Nonsense_Mutation p.W38* 0.39 TCGA-WE-AAA0-06 1 47685408 47685408 C T TAL1 Missense_Mutation p.G327E 0.39 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-WE-AAA0-06 1 51032902 51032902 C T FAF1 Missense_Mutation p.R372K 0.47 deleterious(0) probably_damaging(0.942) TCGA-WE-AAA0-06 1 51887457 51887457 C A EPS15 Splice_Site p.X371_splice 0.22 TCGA-WE-AAA0-06 1 55134591 55134591 C T MROH7 Missense_Mutation p.T457I 0.17 tolerated(0.09) benign(0.005) TCGA-WE-AAA0-06 1 57161727 57161727 G A PRKAA2 Missense_Mutation p.G228E 0.43 deleterious(0.05) possibly_damaging(0.724) TCGA-WE-AAA0-06 1 57209736 57209736 C T C1orf168 Silent p.P502P 0.45 TCGA-WE-AAA0-06 1 57333373 57333373 A T C8A Nonsense_Mutation p.K57* 0.18 TCGA-WE-AAA0-06 1 57602287 57602287 C T DAB1 Missense_Mutation p.G79R 0.33 deleterious(0) possibly_damaging(0.598) TCGA-WE-AAA0-06 1 6186803 6186803 C T CHD5 Missense_Mutation p.E1303K 0.60 deleterious(0.02) possibly_damaging(0.525) TCGA-WE-AAA0-06 1 62237268 62237268 C G INADL Missense_Mutation p.S230R 0.18 tolerated(0.1) benign(0.16) TCGA-WE-AAA0-06 1 62740736 62740736 C T KANK4 Missense_Mutation p.D14N 0.18 tolerated(0.17) benign(0.002) TCGA-WE-AAA0-06 1 65243377 65243377 G A RAVER2 Missense_Mutation p.G130R 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 1 66067323 66067323 G A LEPR Missense_Mutation p.E415K 0.43 tolerated(0.12) benign(0.1) TCGA-WE-AAA0-06 1 66378978 66378978 G A PDE4B 5'UTR 0.18 TCGA-WE-AAA0-06 1 66713169 66713169 C T PDE4B Missense_Mutation p.P103L 0.36 tolerated(0.13) benign(0.001) TCGA-WE-AAA0-06 1 74507403 74507403 C T LRRIQ3 Missense_Mutation p.M404I 0.44 tolerated(0.51) benign(0) TCGA-WE-AAA0-06 1 75108756 75108756 C T C1orf173 Silent p.K90K 0.25 TCGA-WE-AAA0-06 1 77752696 77752696 A G AK5 Missense_Mutation p.K44R 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-WE-AAA0-06 1 82452589 82452589 G A LPHN2 Intron 0.41 TCGA-WE-AAA0-06 1 85598791 85598791 A C WDR63 3'UTR 0.31 TCGA-WE-AAA0-06 1 86889933 86889933 G A CLCA2 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-WE-AAA0-06 1 87031503 87031503 G A CLCA4 Missense_Mutation p.E252K 0.22 tolerated(0.56) benign(0.079) TCGA-WE-AAA0-06 1 89582859 89582859 G A GBP2 Silent p.F228F 0.21 TCGA-WE-AAA0-06 1 93989034 93989034 A G FNBP1L Missense_Mutation p.T110A 0.33 tolerated(0.51) benign(0.002) TCGA-WE-AAA0-06 1 97915735 97915735 G A DPYD Silent p.T595T 0.17 TCGA-WE-AAA0-06 1 97915736 97915736 G A DPYD Missense_Mutation p.T595I 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-WE-AAA0-06 20 13695709 13695709 G A ESF1 Missense_Mutation p.L790F 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-WE-AAA0-06 20 1559208 1559208 C T RP4-576H24.4 Missense_Mutation p.G69E 0.33 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 20 16409649 16409649 C T KIF16B Missense_Mutation p.E475K 0.35 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 20 18022363 18022363 G A OVOL2 Missense_Mutation p.T109I 0.34 deleterious(0) probably_damaging(0.959) TCGA-WE-AAA0-06 20 19665780 19665780 G A SLC24A3 Missense_Mutation p.G367R 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-WE-AAA0-06 20 207945 207945 C T DEFB129 Missense_Mutation p.P6S 0.28 deleterious(0.01) possibly_damaging(0.857) TCGA-WE-AAA0-06 20 23548937 23548937 C T CST9L Missense_Mutation p.V51M 0.34 tolerated(0.12) probably_damaging(0.912) TCGA-WE-AAA0-06 20 2593994 2593994 C T TMC2 Intron 0.25 TCGA-WE-AAA0-06 20 2776984 2776984 C T CPXM1 Missense_Mutation p.G384E 0.18 deleterious(0.02) possibly_damaging(0.838) TCGA-WE-AAA0-06 20 29965229 29965229 G A DEFB118 3'Flank 0.21 TCGA-WE-AAA0-06 20 29978257 29978257 G A DEFB119 Silent p.I10I 0.31 TCGA-WE-AAA0-06 20 30193707 30193707 C T ID1 Intron 0.30 TCGA-WE-AAA0-06 20 33345261 33345261 G A NCOA6 Silent p.S430S 0.20 TCGA-WE-AAA0-06 20 33874617 33874617 C T FAM83C Silent p.P655P 0.31 TCGA-WE-AAA0-06 20 33935011 33935011 G A UQCC1 Missense_Mutation p.H177Y 0.39 tolerated(0.12) benign(0.115) TCGA-WE-AAA0-06 20 34053885 34053885 G T CEP250 Silent p.V116V 0.26 TCGA-WE-AAA0-06 20 34828100 34828100 C T AAR2 Missense_Mutation p.P104S 0.26 tolerated(1) benign(0.007) TCGA-WE-AAA0-06 20 37554984 37554984 G A FAM83D 5'UTR 0.25 TCGA-WE-AAA0-06 20 377167 377167 C G TRIB3 Missense_Mutation p.L304V 0.29 deleterious(0) probably_damaging(0.99) TCGA-WE-AAA0-06 20 3781909 3781909 T A CDC25B Missense_Mutation p.S238R 0.25 deleterious(0.02) possibly_damaging(0.451) TCGA-WE-AAA0-06 20 40790139 40790139 G A PTPRT Silent p.I845I 0.41 TCGA-WE-AAA0-06 20 41419837 41419837 G A PTPRT Nonsense_Mutation p.Q162* 0.23 TCGA-WE-AAA0-06 20 42169585 42169585 C T L3MBTL1 Silent p.V780V 0.26 TCGA-WE-AAA0-06 20 42683011 42683011 G A TOX2 Missense_Mutation p.D242N 0.27 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 20 42969837 42969837 T A R3HDML Missense_Mutation p.V88D 0.32 deleterious(0.03) benign(0.1) TCGA-WE-AAA0-06 20 43703793 43703793 G A STK4 Silent p.K480K 0.41 TCGA-WE-AAA0-06 20 43850578 43850578 G A SEMG2 Missense_Mutation p.G102E 0.27 tolerated(0.17) probably_damaging(0.999) TCGA-WE-AAA0-06 20 44171448 44171448 C T EPPIN Nonsense_Mutation p.W94* 0.27 TCGA-WE-AAA0-06 20 44352630 44352630 G A SPINT4 Missense_Mutation p.G76D 0.34 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 20 44645002 44645002 G A MMP9 Missense_Mutation p.D707N 0.23 tolerated_low_confidence(0.45) benign(0.065) TCGA-WE-AAA0-06 20 45130207 45130207 G A ZNF334 Nonsense_Mutation p.Q591* 0.33 TCGA-WE-AAA0-06 20 45131398 45131398 C T ZNF334 Missense_Mutation p.E194K 0.30 deleterious(0.04) benign(0.296) TCGA-WE-AAA0-06 20 45242391 45242391 G A SLC13A3 Intron 0.45 TCGA-WE-AAA0-06 20 48098528 48098528 C T KCNB1 Missense_Mutation p.D164N 0.27 tolerated(0.11) possibly_damaging(0.866) TCGA-WE-AAA0-06 20 49626297 49626297 G A KCNG1 Silent p.G193G 0.30 TCGA-WE-AAA0-06 20 50217710 50217710 G A ATP9A 3'UTR 0.21 TCGA-WE-AAA0-06 20 50407356 50407356 C - SALL4 Frame_Shift_Del p.E556Rfs*20 0.24 TCGA-WE-AAA0-06 20 50768723 50768723 G A ZFP64 Missense_Mutation p.P670S 0.20 tolerated_low_confidence(0.49) benign(0.001) TCGA-WE-AAA0-06 20 51870241 51870241 G A TSHZ2 Missense_Mutation p.E82K 0.21 tolerated(0.08) possibly_damaging(0.475) TCGA-WE-AAA0-06 20 57769086 57769086 C T ZNF831 Silent p.I1004I 0.29 TCGA-WE-AAA0-06 20 58318299 58318299 G A PHACTR3 Missense_Mutation p.E86K 0.28 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 20 5843785 5843785 C T C20orf196 Silent p.S98S 0.12 TCGA-WE-AAA0-06 20 5974185 5974185 C T MCM8 Silent p.N758N 0.20 TCGA-WE-AAA0-06 20 60908252 60908252 G A LAMA5 Missense_Mutation p.A1059V 0.33 benign(0.254) TCGA-WE-AAA0-06 20 61978156 61978156 G A CHRNA4 Silent p.F606F 0.18 TCGA-WE-AAA0-06 20 62198387 62198387 G A HELZ2 Missense_Mutation p.P775L 0.31 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 20 62202114 62202114 G A HELZ2 Missense_Mutation p.A129V 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-WE-AAA0-06 20 62250833 62250833 G A GMEB2 5'UTR 0.31 TCGA-WE-AAA0-06 20 77140 77140 C T DEFB125 3'UTR 0.20 TCGA-WE-AAA0-06 20 8719936 8719936 G A PLCB1 Missense_Mutation p.R746K 0.30 tolerated(0.05) probably_damaging(0.995) TCGA-WE-AAA0-06 20 9510315 9510315 G A LAMP5 Missense_Mutation p.E231K 0.27 tolerated(0.06) possibly_damaging(0.776) TCGA-WE-AAA0-06 21 10862908 10862908 A G IGHV1OR21-1 Silent p.G68G 0.08 TCGA-WE-AAA0-06 21 10920104 10920104 C T TPTE Missense_Mutation p.G384R 0.09 deleterious(0) possibly_damaging(0.867) TCGA-WE-AAA0-06 21 33371243 33371243 C T HUNK Missense_Mutation p.P631S 0.33 tolerated_low_confidence(0.4) benign(0.01) TCGA-WE-AAA0-06 21 34809297 34809297 T G IFNGR2 3'UTR 0.24 TCGA-WE-AAA0-06 21 35122604 35122604 C T ITSN1 Missense_Mutation p.P168L 0.38 deleterious(0) unknown(0) TCGA-WE-AAA0-06 21 38853019 38853019 A G DYRK1A Missense_Mutation p.Y136C 0.35 deleterious(0.02) benign(0.432) TCGA-WE-AAA0-06 21 39672132 39672132 C T KCNJ15 Missense_Mutation p.L317F 0.18 tolerated(0.23) possibly_damaging(0.711) TCGA-WE-AAA0-06 21 41151175 41151175 C T IGSF5 Missense_Mutation p.R293C 0.27 tolerated(0.18) benign(0) TCGA-WE-AAA0-06 21 41385279 41385279 C T DSCAM Missense_Mutation p.M1907I 0.38 tolerated_low_confidence(0.12) benign(0.054) TCGA-WE-AAA0-06 21 41416064 41416064 G A DSCAM Missense_Mutation p.A1775V 0.15 tolerated(0.64) benign(0.003) TCGA-WE-AAA0-06 21 41505886 41505886 C T DSCAM Missense_Mutation p.D1153N 0.32 tolerated(0.45) benign(0.012) TCGA-WE-AAA0-06 21 44589290 44589290 C T CRYAA Silent p.F27F 0.24 TCGA-WE-AAA0-06 21 45675954 45675954 C T DNMT3L Silent p.K200K 0.24 TCGA-WE-AAA0-06 21 45811359 45811359 T G TRPM2 Missense_Mutation p.C549G 0.43 tolerated(0.39) benign(0.002) TCGA-WE-AAA0-06 21 45826491 45826491 C A TRPM2 Missense_Mutation p.F935L 0.20 tolerated(0.07) probably_damaging(0.943) TCGA-WE-AAA0-06 21 46074374 46074374 G A KRTAP12-4 Missense_Mutation p.S53F 0.59 deleterious(0) possibly_damaging(0.683) TCGA-WE-AAA0-06 21 46101649 46101649 C T KRTAP12-1 3'UTR 0.50 TCGA-WE-AAA0-06 22 17669235 17669235 C T CECR1 Missense_Mutation p.E359K 0.36 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 22 18096030 18096030 C T ATP6V1E1 Silent p.K52K 0.23 TCGA-WE-AAA0-06 22 18844884 18844884 G T BCRP7 RNA 0.14 TCGA-WE-AAA0-06 22 19346994 19346994 G C HIRA Missense_Mutation p.P700R 0.28 deleterious(0.04) probably_damaging(0.921) TCGA-WE-AAA0-06 22 19348861 19348861 G A HIRA Missense_Mutation p.P662S 0.29 tolerated(0.21) benign(0.055) TCGA-WE-AAA0-06 22 21150594 21150594 G T PI4KA Missense_Mutation p.S706Y 0.25 deleterious(0) probably_damaging(0.985) TCGA-WE-AAA0-06 22 21150596 21150596 G A PI4KA Silent p.C705C 0.30 TCGA-WE-AAA0-06 22 21799560 21799560 C T HIC2 Missense_Mutation p.L126F 0.30 deleterious(0) possibly_damaging(0.849) TCGA-WE-AAA0-06 22 25010868 25010868 C T GGT1 Missense_Mutation p.T97I 0.26 tolerated(0.12) benign(0.039) TCGA-WE-AAA0-06 22 25623915 25623915 G A CRYBB2 Missense_Mutation p.R90K 0.25 tolerated(0.12) benign(0.016) TCGA-WE-AAA0-06 22 26164563 26164563 G A MYO18B Missense_Mutation p.G227E 0.31 tolerated_low_confidence(0.26) benign(0.006) TCGA-WE-AAA0-06 22 26243441 26243441 C T MYO18B Silent p.I1199I 0.40 TCGA-WE-AAA0-06 22 26348311 26348311 C T MYO18B Silent p.I1964I 0.37 TCGA-WE-AAA0-06 22 29956757 29956757 C T NIPSNAP1 Silent p.Q224Q 0.23 TCGA-WE-AAA0-06 22 30824606 30824606 C T MTFP1 3'UTR 0.27 TCGA-WE-AAA0-06 22 31011649 31011649 T C TCN2 Missense_Mutation p.V272A 0.25 tolerated(1) benign(0.001) TCGA-WE-AAA0-06 22 35478537 35478537 C T ISX Missense_Mutation p.R86C 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 22 35719532 35719532 T G TOM1 Missense_Mutation p.V137G 0.28 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 22 38121764 38121764 C T TRIOBP Silent p.H1067H 0.24 TCGA-WE-AAA0-06 22 38130462 38130462 C T TRIOBP Silent p.P1373P 0.30 TCGA-WE-AAA0-06 22 40037026 40037026 G A CACNA1I Missense_Mutation p.D299N 0.54 deleterious(0.03) possibly_damaging(0.901) TCGA-WE-AAA0-06 22 41349560 41349560 G A RBX1 Nonsense_Mutation p.W27* 0.31 TCGA-WE-AAA0-06 22 43627795 43627795 C T SCUBE1 Missense_Mutation p.G311S 0.39 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 22 43972315 43972315 G A EFCAB6 Silent p.F1094F 0.20 TCGA-WE-AAA0-06 22 44074010 44074010 G A EFCAB6 Nonsense_Mutation p.R429* 0.23 TCGA-WE-AAA0-06 22 44161240 44161240 G A EFCAB6 Missense_Mutation p.L129F 0.26 deleterious(0.03) benign(0.06) TCGA-WE-AAA0-06 22 45309886 45309886 G A PHF21B Missense_Mutation p.P216L 0.18 tolerated_low_confidence(0.19) benign(0.005) TCGA-WE-AAA0-06 22 46930472 46930472 C T CELSR1 Missense_Mutation p.D866N 0.33 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 22 50659664 50659664 C T TUBGCP6 Missense_Mutation p.E1042K 0.24 tolerated(0.58) benign(0.015) TCGA-WE-AAA0-06 2 100917151 100917151 C T LONRF2 Missense_Mutation p.M340I 0.30 tolerated(1) benign(0) TCGA-WE-AAA0-06 2 102482908 102482908 T A MAP4K4 Silent p.L663L 0.28 TCGA-WE-AAA0-06 2 102644743 102644743 G A IL1R2 Silent p.L362L 0.29 TCGA-WE-AAA0-06 2 102836424 102836424 C T IL1RL2 Missense_Mutation p.P313L 0.27 deleterious(0.03) benign(0.01) TCGA-WE-AAA0-06 2 103013311 103013311 G A IL18R1 Missense_Mutation p.E531K 0.23 tolerated(0.06) benign(0.04) TCGA-WE-AAA0-06 2 103067427 103067427 A T IL18RAP Missense_Mutation p.N444Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-WE-AAA0-06 2 103095435 103095435 C T SLC9A4 Silent p.L132L 0.35 TCGA-WE-AAA0-06 2 103149214 103149214 G A SLC9A4 3'UTR 0.19 TCGA-WE-AAA0-06 2 103281767 103281767 C T SLC9A2 Missense_Mutation p.S321F 0.22 deleterious(0) probably_damaging(0.966) TCGA-WE-AAA0-06 2 103318905 103318905 G A SLC9A2 Missense_Mutation p.E597K 0.25 tolerated(0.3) possibly_damaging(0.582) TCGA-WE-AAA0-06 2 105858489 105858489 C T GPR45 Silent p.I58I 0.33 TCGA-WE-AAA0-06 2 108488658 108488658 G A RGPD4 Missense_Mutation p.D1400N 0.20 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 2 108626771 108626771 G A SLC5A7 Silent p.T399T 0.22 TCGA-WE-AAA0-06 2 108863781 108863781 C T SULT1C3 Missense_Mutation p.A44V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 2 108872152 108872152 A G SULT1C3 Missense_Mutation p.K175R 0.26 tolerated(0.09) benign(0.044) TCGA-WE-AAA0-06 2 109398751 109398751 C T RANBP2 Silent p.D2976D 0.17 TCGA-WE-AAA0-06 2 110886805 110886805 G A NPHP1 Silent p.F614F 0.41 TCGA-WE-AAA0-06 2 113763598 113763598 C T IL36A Missense_Mutation p.H20Y 0.32 deleterious(0.01) possibly_damaging(0.733) TCGA-WE-AAA0-06 2 11742662 11742662 G A GREB1 Missense_Mutation p.G887E 0.20 tolerated(0.12) probably_damaging(1) TCGA-WE-AAA0-06 2 11758886 11758886 C T GREB1 Silent p.F1295F 0.39 TCGA-WE-AAA0-06 2 121997215 121997215 C T TFCP2L1 Nonsense_Mutation p.W260* 0.28 TCGA-WE-AAA0-06 2 125671694 125671694 C T CNTNAP5 Silent p.I1250I 0.36 TCGA-WE-AAA0-06 2 128322815 128322815 G A MYO7B Nonsense_Mutation p.W47* 0.53 TCGA-WE-AAA0-06 2 131356274 131356274 C T CFC1 Missense_Mutation p.G63E 0.14 tolerated(0.89) benign(0.006) TCGA-WE-AAA0-06 2 131486883 131486883 C T GPR148 Silent p.F53F 0.26 TCGA-WE-AAA0-06 2 131520083 131520083 C T AMER3 Silent p.I146I 0.19 TCGA-WE-AAA0-06 2 131890564 131890564 G A PLEKHB2 Silent p.E141E 0.33 TCGA-WE-AAA0-06 2 131890565 131890565 G A PLEKHB2 Missense_Mutation p.V142I 0.33 tolerated(0.26) benign(0.023) TCGA-WE-AAA0-06 2 135848595 135848595 G A RAB3GAP1 Missense_Mutation p.E60K 0.23 deleterious(0.05) benign(0.371) TCGA-WE-AAA0-06 2 136558210 136558210 C T LCT Silent p.Q1611Q 0.24 TCGA-WE-AAA0-06 2 138030214 138030214 C T THSD7B Missense_Mutation p.S793F 0.30 deleterious(0) possibly_damaging(0.683) TCGA-WE-AAA0-06 2 138030215 138030215 C T THSD7B Silent p.S793S 0.32 TCGA-WE-AAA0-06 2 141110552 141110552 G A LRP1B Nonsense_Mutation p.Q3874* 0.18 TCGA-WE-AAA0-06 2 141202246 141202246 C T LRP1B Missense_Mutation p.E3354K 0.24 benign(0.292) TCGA-WE-AAA0-06 2 141607770 141607770 C T LRP1B Missense_Mutation p.D1614N 0.21 possibly_damaging(0.555) TCGA-WE-AAA0-06 2 141643743 141643743 C T LRP1B Missense_Mutation p.D1310N 0.19 possibly_damaging(0.539) TCGA-WE-AAA0-06 2 141806769 141806769 G A LRP1B Silent p.L525L 0.30 TCGA-WE-AAA0-06 2 1497625 1497625 C T TPO Missense_Mutation p.A607V 0.16 deleterious(0.04) benign(0.03) TCGA-WE-AAA0-06 2 152515621 152515621 G A NEB Silent p.P2011P 0.29 TCGA-WE-AAA0-06 2 155252500 155252500 C T GALNT13 Intron 0.29 TCGA-WE-AAA0-06 2 158115561 158115561 G A GALNT5 Missense_Mutation p.V323M 0.35 deleterious(0) probably_damaging(0.987) TCGA-WE-AAA0-06 2 160898681 160898681 G A PLA2R1 Silent p.H174H 0.28 TCGA-WE-AAA0-06 2 161052044 161052044 G A ITGB6 Silent p.A143A 0.33 TCGA-WE-AAA0-06 2 162875306 162875306 C T DPP4 Silent p.P451P 0.38 TCGA-WE-AAA0-06 2 163150147 163150147 G A IFIH1 Silent p.V267V 0.25 TCGA-WE-AAA0-06 2 163241264 163241264 C T KCNH7 Missense_Mutation p.D966N 0.18 tolerated(0.38) benign(0.001) TCGA-WE-AAA0-06 2 163250930 163250930 C T KCNH7 Silent p.R893R 0.22 TCGA-WE-AAA0-06 2 163374339 163374339 C T KCNH7 Missense_Mutation p.E265K 0.26 tolerated(0.1) benign(0.434) TCGA-WE-AAA0-06 2 163374452 163374452 G A KCNH7 Missense_Mutation p.P227L 0.27 deleterious(0.04) benign(0.295) TCGA-WE-AAA0-06 2 1652174 1652174 C T PXDN Silent p.G1126G 0.39 TCGA-WE-AAA0-06 2 165765264 165765264 A T SLC38A11 Missense_Mutation p.F271L 0.30 tolerated(0.18) benign(0.06) TCGA-WE-AAA0-06 2 166848847 166848847 G A SCN1A Silent p.I1646I 0.25 TCGA-WE-AAA0-06 2 1668800 1668800 C T PXDN Silent p.E446E 0.33 TCGA-WE-AAA0-06 2 167056208 167056208 G A SCN9A Silent p.I1636I 0.25 TCGA-WE-AAA0-06 2 167279835 167279835 C T SCN7A Nonsense_Mutation p.W987* 0.27 TCGA-WE-AAA0-06 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.13 tolerated(0.08) benign(0.007) TCGA-WE-AAA0-06 2 168098401 168098401 C T XIRP2 Missense_Mutation p.T386I 0.24 benign(0.067) TCGA-WE-AAA0-06 2 168104813 168104813 C T XIRP2 Missense_Mutation p.S2304F 0.24 probably_damaging(0.971) TCGA-WE-AAA0-06 2 168106715 168106715 G A XIRP2 Missense_Mutation p.G2938E 0.28 benign(0.185) TCGA-WE-AAA0-06 2 170012859 170012859 C T LRP2 Missense_Mutation p.G4026R 0.33 probably_damaging(1) TCGA-WE-AAA0-06 2 170387165 170387165 G A FASTKD1 Missense_Mutation p.P792S 0.28 tolerated(0.5) benign(0.22) TCGA-WE-AAA0-06 2 173338871 173338871 C T ITGA6 Silent p.A288A 0.32 TCGA-WE-AAA0-06 2 175318560 175318560 G A GPR155 Missense_Mutation p.S594F 0.23 deleterious(0.03) benign(0.003) TCGA-WE-AAA0-06 2 176988212 176988212 C T HOXD9 Missense_Mutation p.S239L 0.31 tolerated(0.08) possibly_damaging(0.468) TCGA-WE-AAA0-06 2 179446888 179446888 C T TTN Missense_Mutation p.D22070N 0.27 TCGA-WE-AAA0-06 2 179448613 179448613 C T TTN Missense_Mutation p.V21766I 0.33 TCGA-WE-AAA0-06 2 179469739 179469739 G A TTN Silent p.F18055F 0.23 TCGA-WE-AAA0-06 2 179472716 179472716 C T TTN Missense_Mutation p.E17600K 0.26 TCGA-WE-AAA0-06 2 179483420 179483420 T A TTN Missense_Mutation p.Q15619H 0.25 TCGA-WE-AAA0-06 2 179497409 179497409 T A TTN Nonsense_Mutation p.K14442* 0.16 TCGA-WE-AAA0-06 2 179499193 179499193 C T TTN Silent p.K14105K 0.18 TCGA-WE-AAA0-06 2 179537395 179537395 G A TTN Missense_Mutation p.P11608S 0.35 TCGA-WE-AAA0-06 2 179567308 179567308 G A TTN Silent p.S10102S 0.19 TCGA-WE-AAA0-06 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.33 TCGA-WE-AAA0-06 2 179576912 179576912 C T TTN Silent p.K9215K 0.27 TCGA-WE-AAA0-06 2 179583280 179583280 C T TTN Missense_Mutation p.G8185R 0.42 TCGA-WE-AAA0-06 2 179587890 179587890 C T TTN Missense_Mutation p.E7282K 0.25 TCGA-WE-AAA0-06 2 179605340 179605340 G A TTN Missense_Mutation p.A4207V 0.36 TCGA-WE-AAA0-06 2 179616182 179616182 C T TTN Intron 0.33 TCGA-WE-AAA0-06 2 179635187 179635187 C T TTN Missense_Mutation p.G2778S 0.38 TCGA-WE-AAA0-06 2 179640518 179640518 C T TTN Missense_Mutation p.E2025K 0.37 TCGA-WE-AAA0-06 2 179656840 179656840 C T TTN Missense_Mutation p.E541K 0.32 TCGA-WE-AAA0-06 2 182403870 182403870 G A CERKL Missense_Mutation p.P522L 0.24 deleterious(0.05) benign(0.082) TCGA-WE-AAA0-06 2 182423339 182423339 G A CERKL Silent p.I284I 0.18 TCGA-WE-AAA0-06 2 185800724 185800724 G A ZNF804A Missense_Mutation p.G201R 0.27 deleterious(0.04) possibly_damaging(0.559) TCGA-WE-AAA0-06 2 185800913 185800913 C T ZNF804A Missense_Mutation p.P264S 0.16 tolerated(0.1) benign(0.014) TCGA-WE-AAA0-06 2 18766412 18766412 G A NT5C1B Intron 0.32 TCGA-WE-AAA0-06 2 189863028 189863028 G A COL3A1 Missense_Mutation p.G654R 0.17 unknown(0) TCGA-WE-AAA0-06 2 191301962 191301962 G A MFSD6 Missense_Mutation p.G403R 0.30 tolerated(0.71) benign(0.002) TCGA-WE-AAA0-06 2 192250607 192250607 C T MYO1B Intron 0.31 TCGA-WE-AAA0-06 2 192701198 192701198 C T SDPR Silent p.K243K 0.26 TCGA-WE-AAA0-06 2 196746709 196746709 C T DNAH7 Missense_Mutation p.G1924E 0.34 deleterious(0) probably_damaging(0.962) TCGA-WE-AAA0-06 2 196753694 196753694 C T DNAH7 Silent p.R1686R 0.22 TCGA-WE-AAA0-06 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.31 deleterious(0) possibly_damaging(0.846) TCGA-WE-AAA0-06 2 202633643 202633643 C T ALS2 5'UTR 0.13 TCGA-WE-AAA0-06 2 203157810 203157810 C T NOP58 Intron 0.26 TCGA-WE-AAA0-06 2 207310034 207310034 C T ADAM23 Missense_Mutation p.P73L 0.24 tolerated_low_confidence(0.32) benign(0) TCGA-WE-AAA0-06 2 207509030 207509030 G A AC010731.4 RNA 0.23 TCGA-WE-AAA0-06 2 21231975 21231975 C T APOB Missense_Mutation p.E2589K 0.18 benign(0.006) TCGA-WE-AAA0-06 2 21232513 21232513 A - APOB Frame_Shift_Del p.F2409Lfs*15 0.19 TCGA-WE-AAA0-06 2 21237460 21237460 C T APOB Missense_Mutation p.M1234I 0.31 benign(0) TCGA-WE-AAA0-06 2 21238376 21238376 G A APOB Missense_Mutation p.S1125F 0.15 probably_damaging(0.996) TCGA-WE-AAA0-06 2 216298098 216298098 C T FN1 Missense_Mutation p.D122N 0.19 deleterious(0.03) probably_damaging(0.966) TCGA-WE-AAA0-06 2 219920174 219920174 G A IHH Missense_Mutation p.P331S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 2 220350081 220350081 C T SPEG Silent p.S2541S 0.30 TCGA-WE-AAA0-06 2 225669928 225669928 G A DOCK10 Missense_Mutation p.S1349L 0.30 deleterious(0) benign(0.273) TCGA-WE-AAA0-06 2 226378366 226378366 G A NYAP2 Silent p.G167G 0.27 TCGA-WE-AAA0-06 2 226446871 226446871 C T NYAP2 Silent p.I246I 0.26 TCGA-WE-AAA0-06 2 226447081 226447081 G A NYAP2 Silent p.K316K 0.35 TCGA-WE-AAA0-06 2 227942700 227942700 C T COL4A4 Missense_Mutation p.G633R 0.20 probably_damaging(0.995) TCGA-WE-AAA0-06 2 228883166 228883166 G A SPHKAP Missense_Mutation p.P802S 0.31 tolerated(0.24) benign(0.034) TCGA-WE-AAA0-06 2 228892214 228892214 C T SPHKAP Missense_Mutation p.E98K 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-WE-AAA0-06 2 234638043 234638043 C T UGT1A3 Missense_Mutation p.R91C 0.32 tolerated(0.05) possibly_damaging(0.67) TCGA-WE-AAA0-06 2 234652098 234652098 G A UGT1A10 Intron 0.38 TCGA-WE-AAA0-06 2 237405916 237405916 G A IQCA1 Silent p.L76L 0.26 TCGA-WE-AAA0-06 2 239003103 239003103 C T SCLY Missense_Mutation p.P358S 0.35 tolerated(0.25) benign(0.009) TCGA-WE-AAA0-06 2 241536159 241536159 G A CAPN10 Missense_Mutation p.G515R 0.39 deleterious(0) benign(0.158) TCGA-WE-AAA0-06 2 241683475 241683475 G T KIF1A Silent p.I1156I 0.24 TCGA-WE-AAA0-06 2 27729368 27729368 G A GCKR Missense_Mutation p.R297Q 0.30 tolerated(0.43) benign(0.006) TCGA-WE-AAA0-06 2 27799987 27799987 C T C2orf16 Missense_Mutation p.P183L 0.31 deleterious(0.04) benign(0.018) TCGA-WE-AAA0-06 2 27820983 27820983 C T ZNF512 Missense_Mutation p.P47S 0.18 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-WE-AAA0-06 2 27876395 27876395 G A SUPT7L Missense_Mutation p.P401L 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WE-AAA0-06 2 31489243 31489243 G A EHD3 Silent p.G427G 0.35 TCGA-WE-AAA0-06 2 31588908 31588908 C T XDH Missense_Mutation p.G797E 0.33 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 2 31602812 31602812 G A XDH Missense_Mutation p.T388I 0.21 tolerated(0.2) benign(0.392) TCGA-WE-AAA0-06 2 31609379 31609379 C T XDH Missense_Mutation p.E232K 0.14 tolerated(0.16) possibly_damaging(0.811) TCGA-WE-AAA0-06 2 31625936 31625936 C T XDH Missense_Mutation p.D59N 0.20 tolerated(0.36) benign(0.139) TCGA-WE-AAA0-06 2 31805846 31805846 G A SRD5A2 RNA 0.38 TCGA-WE-AAA0-06 2 32875244 32875244 T C TTC27 Missense_Mutation p.L195S 0.27 deleterious(0) possibly_damaging(0.864) TCGA-WE-AAA0-06 2 33447169 33447169 G A LTBP1 Missense_Mutation p.M609I 0.42 tolerated(0.22) benign(0.008) TCGA-WE-AAA0-06 2 33585816 33585816 G A LTBP1 Missense_Mutation p.E1385K 0.42 deleterious(0) probably_damaging(0.973) TCGA-WE-AAA0-06 2 36787944 36787944 G A FEZ2 Missense_Mutation p.S323L 0.25 deleterious(0.01) benign(0.079) TCGA-WE-AAA0-06 2 47739505 47739505 C T KCNK12 3'Flank 0.25 TCGA-WE-AAA0-06 2 55746912 55746912 C T CCDC104 5'UTR 0.30 TCGA-WE-AAA0-06 2 55907865 55907865 G A PNPT1 Missense_Mutation p.P183S 0.37 deleterious(0) probably_damaging(0.977) TCGA-WE-AAA0-06 2 60679729 60679729 G A BCL11A 3'Flank 0.40 TCGA-WE-AAA0-06 2 60773118 60773118 C T BCL11A Missense_Mutation p.E125K 0.24 deleterious(0) probably_damaging(0.977) TCGA-WE-AAA0-06 2 65561855 65561855 G A SPRED2 Missense_Mutation p.P86L 0.28 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 2 68882350 68882350 G A PROKR1 Missense_Mutation p.R275K 0.26 tolerated(0.16) possibly_damaging(0.688) TCGA-WE-AAA0-06 2 69207878 69207878 T C GKN1 Missense_Mutation p.Y175H 0.29 tolerated(0.34) benign(0.006) TCGA-WE-AAA0-06 2 70910787 70910787 G T ADD2 Missense_Mutation p.P354H 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 2 70931501 70931501 C T ADD2 Missense_Mutation p.D92N 0.26 deleterious(0) possibly_damaging(0.783) TCGA-WE-AAA0-06 2 71838660 71838660 C T DYSF Silent p.L1375L 0.18 TCGA-WE-AAA0-06 2 71892289 71892289 C T DYSF Intron 0.30 TCGA-WE-AAA0-06 2 74605130 74605130 G A DCTN1 Silent p.S92S 0.32 TCGA-WE-AAA0-06 2 74746774 74746774 C T DQX1 Missense_Mutation p.R572Q 0.30 tolerated(0.06) benign(0.072) TCGA-WE-AAA0-06 2 77746436 77746436 C T LRRTM4 Missense_Mutation p.D187N 0.20 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA0-06 2 80529680 80529680 G A LRRTM1 Missense_Mutation p.A422V 0.28 tolerated(0.51) benign(0.055) TCGA-WE-AAA0-06 2 84518092 84518092 C T FUNDC2P2 RNA 0.28 TCGA-WE-AAA0-06 2 85922493 85922493 C T GNLY Missense_Mutation p.H35Y 0.38 tolerated(0.1) possibly_damaging(0.775) TCGA-WE-AAA0-06 2 85922508 85922508 G A GNLY Missense_Mutation p.E40K 0.19 tolerated(0.08) possibly_damaging(0.899) TCGA-WE-AAA0-06 2 86719255 86719255 T A KDM3A 3'UTR 0.20 TCGA-WE-AAA0-06 2 88422626 88422626 G A FABP1 Intron 0.24 TCGA-WE-AAA0-06 2 88858468 88858468 A G EIF2AK3 Silent p.F1039F 0.43 TCGA-WE-AAA0-06 2 89544315 89544315 C T IGKV2-30 Silent p.V103V 0.21 TCGA-WE-AAA0-06 2 90060930 90060930 A C IGKV6D-21 Missense_Mutation p.T93P 0.24 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 2 95943725 95943725 G A PROM2 Silent p.E341E 0.30 TCGA-WE-AAA0-06 2 95943726 95943726 G A PROM2 Missense_Mutation p.A342T 0.30 tolerated(0.19) benign(0.099) TCGA-WE-AAA0-06 2 98167915 98167915 C T ANKRD36B Intron 0.22 TCGA-WE-AAA0-06 2 98834468 98834468 C T VWA3B Missense_Mutation p.P666S 0.29 tolerated(0.12) benign(0.019) TCGA-WE-AAA0-06 3 10107104 10107104 C T FANCD2 Missense_Mutation p.P732L 0.27 deleterious(0) probably_damaging(0.969) TCGA-WE-AAA0-06 3 101232051 101232051 G A SENP7 5'Flank 0.26 TCGA-WE-AAA0-06 3 101232052 101232052 G A SENP7 5'Flank 0.37 TCGA-WE-AAA0-06 3 101483878 101483878 C T CEP97 Missense_Mutation p.S694L 0.23 deleterious(0.03) benign(0.137) TCGA-WE-AAA0-06 3 10370806 10370806 G A ATP2B2 Missense_Mutation p.R1142C 0.20 deleterious(0.01) possibly_damaging(0.863) TCGA-WE-AAA0-06 3 10387101 10387101 C T ATP2B2 Silent p.V890V 0.31 TCGA-WE-AAA0-06 3 105456100 105456100 T A CBLB Missense_Mutation p.Y329F 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-WE-AAA0-06 3 108572878 108572878 C T TRAT1 3'UTR 0.27 TCGA-WE-AAA0-06 3 109026953 109026953 C T DPPA2 Missense_Mutation p.R195K 0.28 tolerated(0.29) benign(0.004) TCGA-WE-AAA0-06 3 11070502 11070502 C T SLC6A1 Missense_Mutation p.S387F 0.20 tolerated(0.71) benign(0.004) TCGA-WE-AAA0-06 3 111638006 111638006 G A PHLDB2 Missense_Mutation p.E603K 0.33 deleterious(0) probably_damaging(0.973) TCGA-WE-AAA0-06 3 111918227 111918227 G A SLC9C1 Missense_Mutation p.L822F 0.19 deleterious(0.01) possibly_damaging(0.572) TCGA-WE-AAA0-06 3 111950214 111950214 T A SLC9C1 Silent p.A522A 0.27 TCGA-WE-AAA0-06 3 113588428 113588428 G A GRAMD1C Silent p.R83R 0.22 TCGA-WE-AAA0-06 3 113724793 113724793 G A KIAA1407 Missense_Mutation p.P477L 0.19 tolerated(0.64) benign(0.01) TCGA-WE-AAA0-06 3 118865733 118865733 C T C3orf30 Missense_Mutation p.P233S 0.34 tolerated(0.26) probably_damaging(0.986) TCGA-WE-AAA0-06 3 118906807 118906807 G A UPK1B Silent p.R85R 0.23 TCGA-WE-AAA0-06 3 119222452 119222452 T A TIMMDC1 Missense_Mutation p.F145Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 3 119367493 119367493 G A POPDC2 Missense_Mutation p.S208L 0.25 deleterious(0.01) benign(0.065) TCGA-WE-AAA0-06 3 120871334 120871334 G A STXBP5L Missense_Mutation p.G227D 0.24 deleterious(0) probably_damaging(0.95) TCGA-WE-AAA0-06 3 121421333 121421333 T C GOLGB1 Missense_Mutation p.E505G 0.24 possibly_damaging(0.543) TCGA-WE-AAA0-06 3 121659824 121659824 C T SLC15A2 Silent p.I720I 0.25 TCGA-WE-AAA0-06 3 121980581 121980581 G A CASR Silent p.R233R 0.24 TCGA-WE-AAA0-06 3 121980960 121980960 C T CASR Missense_Mutation p.L360F 0.29 tolerated(0.6) benign(0.376) TCGA-WE-AAA0-06 3 123953729 123953729 C T KALRN Missense_Mutation p.H66Y 0.33 tolerated(0.06) possibly_damaging(0.723) TCGA-WE-AAA0-06 3 124909290 124909290 C T SLC12A8 Missense_Mutation p.D43N 0.32 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 3 129140501 129140501 C A EFCAB12 Missense_Mutation p.K65N 0.29 tolerated(0.19) benign(0.01) TCGA-WE-AAA0-06 3 129252535 129252535 G A RHO Missense_Mutation p.E341K 0.28 tolerated(0.25) benign(0.002) TCGA-WE-AAA0-06 3 130290178 130290178 G A COL6A6 Missense_Mutation p.G973E 0.27 tolerated(0.71) probably_damaging(0.965) TCGA-WE-AAA0-06 3 130437269 130437269 A G PIK3R4 Silent p.P697P 0.39 TCGA-WE-AAA0-06 3 13367307 13367307 C T NUP210 Silent p.R1544R 0.25 TCGA-WE-AAA0-06 3 134911584 134911584 G A EPHB1 Silent p.L683L 0.29 TCGA-WE-AAA0-06 3 13612404 13612404 T G FBLN2 Missense_Mutation p.D183E 0.38 tolerated(0.13) benign(0.031) TCGA-WE-AAA0-06 3 136240117 136240117 G A STAG1 Missense_Mutation p.S205F 0.31 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 3 138178845 138178845 G A ESYT3 Missense_Mutation p.G236E 0.30 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 3 138738999 138738999 C T PRR23B Missense_Mutation p.D169N 0.29 tolerated(0.07) probably_damaging(0.966) TCGA-WE-AAA0-06 3 141678602 141678602 A C TFDP2 Missense_Mutation p.F322C 0.27 tolerated(0.53) probably_damaging(0.99) TCGA-WE-AAA0-06 3 142539803 142539803 C T PCOLCE2 Missense_Mutation p.G345E 0.34 deleterious(0.04) probably_damaging(0.986) TCGA-WE-AAA0-06 3 148905929 148905929 G A CP Missense_Mutation p.L592F 0.31 tolerated(0.05) benign(0.006) TCGA-WE-AAA0-06 3 149678726 149678726 G A RNF13 Silent p.S327S 0.28 TCGA-WE-AAA0-06 3 150384800 150384800 A G FAM194A Missense_Mutation p.V501A 0.27 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 3 151129177 151129177 C T MED12L Missense_Mutation p.P1973S 0.28 tolerated_low_confidence(0.87) benign(0.019) TCGA-WE-AAA0-06 3 151164922 151164922 A G IGSF10 Silent p.N949N 0.27 TCGA-WE-AAA0-06 3 151165512 151165512 G A IGSF10 Missense_Mutation p.P753S 0.30 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 3 151463410 151463410 G A AADACL2 Missense_Mutation p.R182Q 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-WE-AAA0-06 3 154007593 154007593 G A DHX36 Missense_Mutation p.H613Y 0.30 deleterious(0.03) possibly_damaging(0.677) TCGA-WE-AAA0-06 3 154832830 154832830 G A MME Missense_Mutation p.D82N 0.29 tolerated(0.66) benign(0.008) TCGA-WE-AAA0-06 3 154858002 154858002 G A MME Missense_Mutation p.R293Q 0.44 deleterious(0.01) probably_damaging(0.968) TCGA-WE-AAA0-06 3 154860062 154860062 G A MME Missense_Mutation p.M377I 0.26 tolerated(0.17) probably_damaging(0.953) TCGA-WE-AAA0-06 3 155198913 155198913 C T PLCH1 Silent p.T1642T 0.25 TCGA-WE-AAA0-06 3 15529760 15529760 G A COLQ Missense_Mutation p.P92S 0.30 tolerated(0.48) benign(0.243) TCGA-WE-AAA0-06 3 16242171 16242171 G A GALNT15 Missense_Mutation p.G251E 0.30 tolerated(0.05) possibly_damaging(0.762) TCGA-WE-AAA0-06 3 164748631 164748631 G A SI Missense_Mutation p.L921F 0.25 tolerated(0.14) benign(0.013) TCGA-WE-AAA0-06 3 167031834 167031834 C T ZBBX Missense_Mutation p.D449N 0.22 tolerated(1) benign(0.001) TCGA-WE-AAA0-06 3 168834320 168834320 C T MECOM Missense_Mutation p.G324E 0.33 tolerated(0.16) probably_damaging(1) TCGA-WE-AAA0-06 3 169846794 169846794 G A PHC3 Missense_Mutation p.P489L 0.26 deleterious(0.01) benign(0.327) TCGA-WE-AAA0-06 3 169846795 169846795 G A PHC3 Missense_Mutation p.P489S 0.26 tolerated(0.4) benign(0.024) TCGA-WE-AAA0-06 3 170150512 170150512 T G CLDN11 Missense_Mutation p.S198A 0.17 tolerated(0.55) possibly_damaging(0.899) TCGA-WE-AAA0-06 3 170198488 170198488 A T SLC7A14 Missense_Mutation p.I528N 0.28 tolerated(0.31) benign(0.048) TCGA-WE-AAA0-06 3 172766795 172766807 AAGCTTTGTCTCA - SPATA16 Frame_Shift_Del p.I230Mfs*8 0.13 TCGA-WE-AAA0-06 3 178968735 178968735 G A KCNMB3 Intron 0.36 TCGA-WE-AAA0-06 3 183756344 183756344 G A HTR3D Missense_Mutation p.G356E 0.21 tolerated(0.34) benign(0.06) TCGA-WE-AAA0-06 3 183756345 183756345 G A HTR3D Silent p.G356G 0.21 TCGA-WE-AAA0-06 3 183818140 183818140 C A HTR3E 5'Flank 0.33 TCGA-WE-AAA0-06 3 184049088 184049088 C T EIF4G1 Missense_Mutation p.A1406V 0.15 deleterious(0.02) benign(0.006) TCGA-WE-AAA0-06 3 184049089 184049089 C T EIF4G1 Silent p.A1406A 0.16 TCGA-WE-AAA0-06 3 18435986 18435986 C T SATB1 Missense_Mutation p.V392I 0.21 tolerated(0.24) benign(0.228) TCGA-WE-AAA0-06 3 184580721 184580721 G A VPS8 Missense_Mutation p.V421I 0.19 tolerated(0.41) benign(0.069) TCGA-WE-AAA0-06 3 185191124 185191124 A C MAP3K13 Missense_Mutation p.N669H 0.32 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-WE-AAA0-06 3 185339654 185339654 C T SENP2 Missense_Mutation p.S496F 0.27 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 3 189704590 189704590 G A LEPREL1 Missense_Mutation p.S392L 0.21 tolerated(0.15) benign(0.001) TCGA-WE-AAA0-06 3 191861879 191861879 T A FGF12 Silent p.G217G 0.22 TCGA-WE-AAA0-06 3 193002863 193002863 C T ATP13A5 Silent p.V1022V 0.15 TCGA-WE-AAA0-06 3 193019029 193019029 G A ATP13A5 Nonsense_Mutation p.Q916* 0.26 TCGA-WE-AAA0-06 3 26751571 26751571 G A LRRC3B Silent p.L136L 0.28 TCGA-WE-AAA0-06 3 3133871 3133871 G A IL5RA Intron 0.19 TCGA-WE-AAA0-06 3 3133872 3133872 A T IL5RA Intron 0.19 TCGA-WE-AAA0-06 3 31705652 31705652 G A OSBPL10 Silent p.H723H 0.23 TCGA-WE-AAA0-06 3 36899114 36899114 C T TRANK1 Missense_Mutation p.G656E 0.40 tolerated(0.42) benign(0.002) TCGA-WE-AAA0-06 3 37070321 37070321 T A MLH1 Missense_Mutation p.S486T 0.30 tolerated(0.42) benign(0.001) TCGA-WE-AAA0-06 3 37070322 37070322 C A MLH1 Missense_Mutation p.S486Y 0.31 deleterious(0.02) benign(0.083) TCGA-WE-AAA0-06 3 37070323 37070323 C T MLH1 Silent p.S486S 0.30 TCGA-WE-AAA0-06 3 38047317 38047317 G A VILL Nonsense_Mutation p.W662* 0.27 TCGA-WE-AAA0-06 3 38103775 38103775 C T DLEC1 Silent p.F263F 0.27 TCGA-WE-AAA0-06 3 38591833 38591833 C T SCN5A Silent p.R2010R 0.33 TCGA-WE-AAA0-06 3 38627269 38627269 G A SCN5A Silent p.I900I 0.37 TCGA-WE-AAA0-06 3 38760267 38760267 C T SCN10A Silent p.L1186L 0.33 TCGA-WE-AAA0-06 3 39225946 39225946 C T XIRP1 Missense_Mutation p.R1664Q 0.27 deleterious(0.03) possibly_damaging(0.84) TCGA-WE-AAA0-06 3 42916057 42916057 C T CYP8B1 Missense_Mutation p.D418N 0.26 tolerated(0.1) benign(0.063) TCGA-WE-AAA0-06 3 44701424 44701424 C T ZNF35 Silent p.T523T 0.25 TCGA-WE-AAA0-06 3 45436161 45436161 C T LARS2 Silent p.S72S 0.38 TCGA-WE-AAA0-06 3 45817429 45817429 C T SLC6A20 Missense_Mutation p.D136N 0.35 tolerated(0.09) benign(0.015) TCGA-WE-AAA0-06 3 46399797 46399797 A T CCR2 Missense_Mutation p.N260I 0.24 deleterious(0.01) possibly_damaging(0.801) TCGA-WE-AAA0-06 3 46874563 46874563 G A PRSS42 Missense_Mutation p.L169F 0.24 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 3 47859514 47859514 C T DHX30 Missense_Mutation p.R11W 0.30 deleterious_low_confidence(0) benign(0.287) TCGA-WE-AAA0-06 3 48956246 48956246 G A ARIH2OS Missense_Mutation p.P113S 0.29 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-WE-AAA0-06 3 49758816 49758816 T A RNF123 3'UTR 0.19 TCGA-WE-AAA0-06 3 50339629 50339629 C T HYAL1 Silent p.E253E 0.28 TCGA-WE-AAA0-06 3 51352537 51352537 G A DOCK3 Missense_Mutation p.R1127K 0.22 tolerated(0.21) possibly_damaging(0.907) TCGA-WE-AAA0-06 3 51895930 51895930 G A IQCF2 Nonsense_Mutation p.W25* 0.26 TCGA-WE-AAA0-06 3 52258126 52258126 G A TLR9 Missense_Mutation p.S223F 0.25 tolerated(0.18) benign(0.03) TCGA-WE-AAA0-06 3 53853624 53853624 A G CHDH Missense_Mutation p.F400L 0.34 tolerated(0.21) benign(0.002) TCGA-WE-AAA0-06 3 54922002 54922002 C T CACNA2D3 Silent p.I691I 0.15 TCGA-WE-AAA0-06 3 55504271 55504271 C T WNT5A Missense_Mutation p.G331D 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-WE-AAA0-06 3 56041285 56041285 G A ERC2 Missense_Mutation p.S662F 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-WE-AAA0-06 3 56044547 56044547 G A ERC2 Missense_Mutation p.S617F 0.26 tolerated(0.18) benign(0.014) TCGA-WE-AAA0-06 3 56468608 56468608 C T ERC2 Missense_Mutation p.R143K 0.25 deleterious(0.04) possibly_damaging(0.81) TCGA-WE-AAA0-06 3 57489756 57489756 G A DNAH12 Missense_Mutation p.A358V 0.27 tolerated(0.06) benign(0.094) TCGA-WE-AAA0-06 3 62503917 62503917 C T CADPS Missense_Mutation p.G767E 0.25 deleterious(0) probably_damaging(0.931) TCGA-WE-AAA0-06 3 64547323 64547323 C T ADAMTS9 Silent p.P1543P 0.25 TCGA-WE-AAA0-06 3 65456016 65456016 G A MAGI1 Missense_Mutation p.P301S 0.36 deleterious(0.02) possibly_damaging(0.892) TCGA-WE-AAA0-06 3 69129303 69129303 C T UBA3 Missense_Mutation p.E8K 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-WE-AAA0-06 3 77147198 77147198 G A ROBO2 Missense_Mutation p.R48Q 0.37 tolerated(0.07) unknown(0) TCGA-WE-AAA0-06 3 81627109 81627109 C T GBE1 Missense_Mutation p.G529R 0.31 deleterious(0) benign(0.241) TCGA-WE-AAA0-06 3 97198157 97198157 G A EPHA6 Missense_Mutation p.A675T 0.19 tolerated(0.12) benign(0.023) TCGA-WE-AAA0-06 3 97311555 97311555 G A EPHA6 Missense_Mutation p.G829E 0.41 tolerated_low_confidence(0.14) benign(0.319) TCGA-WE-AAA0-06 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.22 deleterious(0.01) possibly_damaging(0.595) TCGA-WE-AAA0-06 3 98002245 98002245 A G OR5H2 Missense_Mutation p.T172A 0.22 deleterious(0.05) possibly_damaging(0.685) TCGA-WE-AAA0-06 4 1018881 1018881 G A FGFRL1 Missense_Mutation p.G421R 0.44 tolerated(0.33) benign(0.042) TCGA-WE-AAA0-06 4 104035641 104035641 C T CENPE Missense_Mutation p.R2504K 0.18 probably_damaging(0.99) TCGA-WE-AAA0-06 4 104577402 104577402 G A TACR3 Silent p.I279I 0.23 TCGA-WE-AAA0-06 4 106859512 106859512 G A NPNT Missense_Mutation p.G177E 0.17 deleterious(0.03) benign(0.347) TCGA-WE-AAA0-06 4 122261758 122261758 G A QRFPR Silent p.F116F 0.33 TCGA-WE-AAA0-06 4 122828490 122828490 G A TRPC3 Silent p.Y675Y 0.28 TCGA-WE-AAA0-06 4 123275103 123275103 G A KIAA1109 Missense_Mutation p.E4746K 0.21 probably_damaging(0.982) TCGA-WE-AAA0-06 4 1244865 1244865 C T CTBP1 5'Flank 0.28 TCGA-WE-AAA0-06 4 126412171 126412171 G A FAT4 Missense_Mutation p.E4732K 0.34 benign(0.215) TCGA-WE-AAA0-06 4 129793116 129793116 G A JADE1 Missense_Mutation p.S743N 0.24 tolerated(0.17) possibly_damaging(0.706) TCGA-WE-AAA0-06 4 13602155 13602155 G A BOD1L1 Silent p.V2123V 0.36 TCGA-WE-AAA0-06 4 138442251 138442251 C T PCDH18 Missense_Mutation p.E1114K 0.23 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA0-06 4 138452827 138452827 C T PCDH18 Missense_Mutation p.R139K 0.34 tolerated(0.28) probably_damaging(0.992) TCGA-WE-AAA0-06 4 138453184 138453184 G A PCDH18 Missense_Mutation p.S20F 0.34 tolerated(0.26) benign(0.001) TCGA-WE-AAA0-06 4 139101830 139101830 G A SLC7A11 Nonsense_Mutation p.R411* 0.38 TCGA-WE-AAA0-06 4 143350356 143350356 G A INPP4B Missense_Mutation p.P36S 0.29 tolerated(0.15) benign(0.007) TCGA-WE-AAA0-06 4 147561020 147561020 G A POU4F2 Missense_Mutation p.S97N 0.29 deleterious_low_confidence(0.03) benign(0.074) TCGA-WE-AAA0-06 4 147795880 147795880 T A TTC29 Missense_Mutation p.I263L 0.36 tolerated(0.23) benign(0.067) TCGA-WE-AAA0-06 4 147795931 147795931 C T TTC29 Missense_Mutation p.E246K 0.20 tolerated(0.15) benign(0.008) TCGA-WE-AAA0-06 4 15034806 15034806 C T CPEB2 Missense_Mutation p.P716L 0.13 deleterious_low_confidence(0.01) benign(0.32) TCGA-WE-AAA0-06 4 151160906 151160906 C T DCLK2 Missense_Mutation p.P544S 0.32 tolerated(0.47) benign(0.008) TCGA-WE-AAA0-06 4 154237077 154237077 C T TRIM2 Missense_Mutation p.P570S 0.31 tolerated(0.58) benign(0.155) TCGA-WE-AAA0-06 4 155156393 155156393 C A DCHS2 Missense_Mutation p.R2682S 0.31 deleterious(0) probably_damaging(0.985) TCGA-WE-AAA0-06 4 155157024 155157024 G A DCHS2 Missense_Mutation p.S2472L 0.32 deleterious(0.04) benign(0.109) TCGA-WE-AAA0-06 4 155305593 155305593 G A DCHS2 Missense_Mutation p.P54L 0.21 tolerated_low_confidence(0.17) benign(0) TCGA-WE-AAA0-06 4 155720156 155720156 G A RBM46 Missense_Mutation p.R281Q 0.19 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 4 156632181 156632181 C T GUCY1A3 Silent p.F288F 0.28 TCGA-WE-AAA0-06 4 157684334 157684334 C T PDGFC Missense_Mutation p.G316S 0.17 tolerated(0.12) probably_damaging(1) TCGA-WE-AAA0-06 4 164271969 164271969 G A NPY5R Missense_Mutation p.E182K 0.27 tolerated(0.31) benign(0.243) TCGA-WE-AAA0-06 4 16504614 16504614 G A LDB2 Intron 0.31 TCGA-WE-AAA0-06 4 16510261 16510261 G A LDB2 Missense_Mutation p.S263F 0.21 deleterious(0) probably_damaging(0.99) TCGA-WE-AAA0-06 4 165890654 165890654 C T TRIM61 Silent p.R167R 0.23 TCGA-WE-AAA0-06 4 165961503 165961503 G A TRIM60 Silent p.E93E 0.23 TCGA-WE-AAA0-06 4 166910547 166910547 G A TLL1 Missense_Mutation p.D62N 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-WE-AAA0-06 4 166910583 166910583 C T TLL1 Nonsense_Mutation p.Q74* 0.21 TCGA-WE-AAA0-06 4 174235208 174235208 G A GALNT7 Missense_Mutation p.E497K 0.30 tolerated(0.22) benign(0.027) TCGA-WE-AAA0-06 4 174450165 174450165 C T HAND2 Silent p.L92L 0.35 TCGA-WE-AAA0-06 4 175649783 175649783 G A GLRA3 Missense_Mutation p.P112S 0.24 deleterious(0.05) possibly_damaging(0.595) TCGA-WE-AAA0-06 4 177605173 177605173 C T VEGFC Silent p.T389T 0.32 TCGA-WE-AAA0-06 4 178881972 178881972 T A LINC01098 5'UTR 0.39 TCGA-WE-AAA0-06 4 183549863 183549863 G A TENM3 Missense_Mutation p.G270E 0.35 deleterious(0) probably_damaging(0.982) TCGA-WE-AAA0-06 4 183675866 183675866 A G TENM3 Missense_Mutation p.D1449G 0.22 deleterious(0) benign(0.007) TCGA-WE-AAA0-06 4 185038021 185038021 C T ENPP6 Silent p.G281G 0.18 TCGA-WE-AAA0-06 4 185310106 185310106 G A IRF2 Missense_Mutation p.P286S 0.32 tolerated(0.2) possibly_damaging(0.449) TCGA-WE-AAA0-06 4 186317982 186317982 C G ANKRD37 5'UTR 0.30 TCGA-WE-AAA0-06 4 187209686 187209686 G T F11 Missense_Mutation p.C599F 0.21 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 4 189065276 189065276 G A TRIML1 Missense_Mutation p.R282K 0.32 tolerated(0.85) benign(0.004) TCGA-WE-AAA0-06 4 1988136 1988136 G A NELFA Intron 0.36 TCGA-WE-AAA0-06 4 20591305 20591305 G A SLIT2 Missense_Mutation p.D1043N 0.57 tolerated(0.18) benign(0.009) TCGA-WE-AAA0-06 4 23816141 23816141 G A PPARGC1A Missense_Mutation p.T322I 0.23 tolerated(0.23) possibly_damaging(0.548) TCGA-WE-AAA0-06 4 25678317 25678317 G A SLC34A2 Silent p.E673E 0.37 TCGA-WE-AAA0-06 4 25806244 25806244 G A SEL1L3 Silent p.S565S 0.08 TCGA-WE-AAA0-06 4 3241747 3241747 G A HTT Silent p.L3130L 0.22 TCGA-WE-AAA0-06 4 3319309 3319309 C T RGS12 Missense_Mutation p.P471L 0.26 tolerated(0.16) benign(0.001) TCGA-WE-AAA0-06 4 38023250 38023250 C T TBC1D1 Missense_Mutation p.A374V 0.25 deleterious(0) possibly_damaging(0.73) TCGA-WE-AAA0-06 4 40122796 40122796 T C N4BP2 Missense_Mutation p.F1022S 0.35 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 4 41262678 41262678 G A UCHL1 Silent p.R63R 0.15 TCGA-WE-AAA0-06 4 41686490 41686490 G A LIMCH1 Missense_Mutation p.E924K 0.23 tolerated(0.69) benign(0.148) TCGA-WE-AAA0-06 4 44176702 44176702 G A KCTD8 3'UTR 0.17 TCGA-WE-AAA0-06 4 46060239 46060239 G A GABRG1 Missense_Mutation p.S304L 0.42 tolerated(0.1) probably_damaging(0.996) TCGA-WE-AAA0-06 4 46307674 46307674 G A GABRA2 Missense_Mutation p.S205L 0.23 deleterious(0) probably_damaging(0.93) TCGA-WE-AAA0-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.25 tolerated(0.48) benign(0.199) TCGA-WE-AAA0-06 4 49052739 49052739 G A CWH43 Missense_Mutation p.E632K 0.24 tolerated(0.15) benign(0.008) TCGA-WE-AAA0-06 4 52951106 52951106 C T SPATA18 Missense_Mutation p.R502C 0.31 deleterious(0) probably_damaging(0.988) TCGA-WE-AAA0-06 4 59323 59323 G A ZNF595 Missense_Mutation p.E2K 0.05 tolerated_low_confidence(0.23) benign(0.046) TCGA-WE-AAA0-06 4 62598546 62598546 G A LPHN3 Missense_Mutation p.A157T 0.47 deleterious(0) possibly_damaging(0.902) TCGA-WE-AAA0-06 4 65155443 65155443 G A TECRL Missense_Mutation p.H273Y 0.33 deleterious(0.01) probably_damaging(0.915) TCGA-WE-AAA0-06 4 65274985 65274985 C T TECRL Missense_Mutation p.D29N 0.24 tolerated_low_confidence(0.16) benign(0.006) TCGA-WE-AAA0-06 4 6590804 6590804 C T MAN2B2 Silent p.S199S 0.24 TCGA-WE-AAA0-06 4 69533829 69533829 G A UGT2B15 Missense_Mutation p.P268S 0.26 deleterious(0.01) possibly_damaging(0.856) TCGA-WE-AAA0-06 4 69535652 69535652 C T UGT2B15 Missense_Mutation p.D229N 0.25 tolerated(1) benign(0.009) TCGA-WE-AAA0-06 4 70810643 70810643 C T CSN1S1 Missense_Mutation p.P160S 0.23 tolerated(0.54) probably_damaging(0.932) TCGA-WE-AAA0-06 4 71232496 71232496 C T SMR3A Missense_Mutation p.P64S 0.29 tolerated_low_confidence(0.28) unknown(0) TCGA-WE-AAA0-06 4 71398172 71398172 G A AMTN Missense_Mutation p.G207E 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.675) TCGA-WE-AAA0-06 4 74282017 74282017 C T ALB Silent p.I412I 0.28 TCGA-WE-AAA0-06 4 74318288 74318288 C T AFP Silent p.F533F 0.29 TCGA-WE-AAA0-06 4 74365819 74365819 G A AFM Silent p.R507R 0.25 TCGA-WE-AAA0-06 4 75675910 75675910 C T BTC Missense_Mutation p.G101R 0.26 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 4 75937856 75937856 G A PARM1 Missense_Mutation p.E89K 0.24 tolerated(0.16) benign(0.167) TCGA-WE-AAA0-06 4 77247109 77247109 G A CCDC158 Missense_Mutation p.P1020S 0.28 deleterious(0.01) benign(0.007) TCGA-WE-AAA0-06 4 81884773 81884773 A G C4orf22 3'Flank 0.27 TCGA-WE-AAA0-06 4 85600108 85600108 G A WDFY3 Missense_Mutation p.P3371S 0.18 tolerated_low_confidence(0.25) benign(0) TCGA-WE-AAA0-06 4 87019689 87019689 G A MAPK10 Missense_Mutation p.P264S 0.29 deleterious(0.04) benign(0.233) TCGA-WE-AAA0-06 4 87744814 87744814 G A SLC10A6 3'UTR 0.44 TCGA-WE-AAA0-06 4 87968541 87968541 C T AFF1 Missense_Mutation p.S285F 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-WE-AAA0-06 4 88583469 88583469 G A DMP1 Missense_Mutation p.G180E 0.29 deleterious(0.04) probably_damaging(1) TCGA-WE-AAA0-06 4 89384698 89384698 C T HERC5 Missense_Mutation p.S235F 0.18 tolerated(0.7) possibly_damaging(0.888) TCGA-WE-AAA0-06 4 90169634 90169634 G A GPRIN3 Missense_Mutation p.P543L 0.24 tolerated(0.13) benign(0.122) TCGA-WE-AAA0-06 4 949228 949228 C A TMEM175 Silent p.P221P 0.23 TCGA-WE-AAA0-06 4 956284 956284 A C DGKQ Missense_Mutation p.L718R 0.25 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 4 99049628 99049628 G A STPG2 Missense_Mutation p.P113L 0.17 deleterious(0.02) probably_damaging(0.911) TCGA-WE-AAA0-06 5 110442994 110442994 G A WDR36 Silent p.E450E 0.23 TCGA-WE-AAA0-06 5 110710562 110710562 C T CAMK4 Silent p.I85I 0.26 TCGA-WE-AAA0-06 5 110710602 110710602 C T CAMK4 Missense_Mutation p.P99S 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-WE-AAA0-06 5 110835658 110835658 G A STARD4 Missense_Mutation p.P182S 0.24 deleterious(0) probably_damaging(0.983) TCGA-WE-AAA0-06 5 112228313 112228313 C T ZRSR1 Missense_Mutation p.P326L 0.27 deleterious(0) probably_damaging(0.925) TCGA-WE-AAA0-06 5 118965484 118965484 G A FAM170A Silent p.R7R 0.44 TCGA-WE-AAA0-06 5 120021953 120021953 G A PRR16 Missense_Mutation p.R132Q 0.29 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-WE-AAA0-06 5 121799301 121799301 C T SNCAIP 3'UTR 0.27 TCGA-WE-AAA0-06 5 131976454 131976454 C T RAD50 Missense_Mutation p.L1237F 0.58 deleterious(0.04) probably_damaging(1) TCGA-WE-AAA0-06 5 134782663 134782663 G A C5orf20 Missense_Mutation p.P46S 0.78 tolerated_low_confidence(0.09) possibly_damaging(0.803) TCGA-WE-AAA0-06 5 135561016 135561016 C T TRPC7 Silent p.R763R 0.50 TCGA-WE-AAA0-06 5 13753355 13753355 C T DNAH5 Missense_Mutation p.R3620Q 0.33 possibly_damaging(0.553) TCGA-WE-AAA0-06 5 139189165 139189165 G A PSD2 Missense_Mutation p.G47E 0.60 deleterious_low_confidence(0) benign(0.004) TCGA-WE-AAA0-06 5 13928280 13928280 C T DNAH5 Missense_Mutation p.R67K 0.40 benign(0.067) TCGA-WE-AAA0-06 5 139739960 139739960 G A SLC4A9 Missense_Mutation p.E47K 0.63 deleterious(0.01) benign(0.021) TCGA-WE-AAA0-06 5 140235981 140235981 C T PCDHA10 Silent p.F116F 0.61 TCGA-WE-AAA0-06 5 140241136 140241136 G A AC005609.1 3'UTR 0.57 TCGA-WE-AAA0-06 5 140249602 140249602 G A PCDHA11 Missense_Mutation p.G305E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-WE-AAA0-06 5 140262839 140262839 C A PCDHA13 Missense_Mutation p.P329Q 0.60 deleterious_low_confidence(0.04) possibly_damaging(0.587) TCGA-WE-AAA0-06 5 140562176 140562176 C T PCDHB16 Silent p.V14V 0.61 TCGA-WE-AAA0-06 5 140563351 140563351 A T PCDHB16 Missense_Mutation p.E406V 0.60 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-WE-AAA0-06 5 140730452 140730452 C T PCDHGB1 Silent p.L209L 0.49 TCGA-WE-AAA0-06 5 140736055 140736055 C T PCDHGA4 Missense_Mutation p.P430S 0.67 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WE-AAA0-06 5 140764587 140764587 C T PCDHGA7 Silent p.F707F 0.49 TCGA-WE-AAA0-06 5 141046087 141046087 G A ARAP3 Missense_Mutation p.L826F 0.60 deleterious(0.01) probably_damaging(0.954) TCGA-WE-AAA0-06 5 142283211 142283211 G T ARHGAP26 Missense_Mutation p.G270V 0.51 deleterious(0) probably_damaging(0.953) TCGA-WE-AAA0-06 5 1501692 1501692 G A LPCAT1 Silent p.F54F 0.24 TCGA-WE-AAA0-06 5 151173801 151173801 C T G3BP1 Missense_Mutation p.P145S 0.55 tolerated(0.13) probably_damaging(0.994) TCGA-WE-AAA0-06 5 156727768 156727768 C T CYFIP2 Missense_Mutation p.H119Y 0.91 deleterious(0) possibly_damaging(0.845) TCGA-WE-AAA0-06 5 156946933 156946933 C T ADAM19 Missense_Mutation p.G172R 0.59 deleterious(0.02) benign(0.307) TCGA-WE-AAA0-06 5 156946934 156946934 C T ADAM19 Silent p.P171P 0.57 TCGA-WE-AAA0-06 5 158750298 158750298 C T IL12B Missense_Mutation p.G43E 0.69 deleterious(0.01) possibly_damaging(0.652) TCGA-WE-AAA0-06 5 160042962 160042962 C T ATP10B Missense_Mutation p.E846K 0.66 tolerated(0.38) possibly_damaging(0.779) TCGA-WE-AAA0-06 5 16091079 16091079 G A MARCH11 Missense_Mutation p.P269S 0.30 tolerated(0.06) probably_damaging(0.969) TCGA-WE-AAA0-06 5 167642078 167642078 G A TENM2 Silent p.V1293V 0.65 TCGA-WE-AAA0-06 5 171765800 171765800 G A SH3PXD2B Missense_Mutation p.S770L 0.26 tolerated_low_confidence(0.07) benign(0.164) TCGA-WE-AAA0-06 5 176309023 176309023 T C HK3 Missense_Mutation p.D720G 0.49 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 5 176318179 176318179 G A HK3 Silent p.F91F 0.60 TCGA-WE-AAA0-06 5 176684103 176684103 C T NSD1 Silent p.I1639I 0.65 TCGA-WE-AAA0-06 5 179228801 179228801 G A MGAT4B Missense_Mutation p.T104I 0.43 tolerated(0.09) possibly_damaging(0.507) TCGA-WE-AAA0-06 5 19839025 19839025 C T CDH18 Missense_Mutation p.G24E 0.19 tolerated(0.25) benign(0.014) TCGA-WE-AAA0-06 5 22143015 22143015 C T CDH12 Intron 0.18 TCGA-WE-AAA0-06 5 23527178 23527178 G A PRDM9 Missense_Mutation p.E661K 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-WE-AAA0-06 5 24509721 24509721 C T CDH10 Missense_Mutation p.G404S 0.21 deleterious(0) possibly_damaging(0.5) TCGA-WE-AAA0-06 5 26881582 26881582 C T CDH9 Missense_Mutation p.R678K 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-WE-AAA0-06 5 31317782 31317782 A T CDH6 Missense_Mutation p.N545Y 0.33 deleterious(0) probably_damaging(0.947) TCGA-WE-AAA0-06 5 35010117 35010117 C T AGXT2 Missense_Mutation p.M442I 0.29 deleterious(0.01) possibly_damaging(0.876) TCGA-WE-AAA0-06 5 35649489 35649489 C T SPEF2 Silent p.F251F 0.24 TCGA-WE-AAA0-06 5 35871203 35871203 G A IL7R Missense_Mutation p.G142E 0.31 tolerated(1) benign(0.001) TCGA-WE-AAA0-06 5 37008795 37008795 C T NIPBL Missense_Mutation p.P1464L 0.26 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 5 38885586 38885586 C T OSMR Missense_Mutation p.S280L 0.27 tolerated(0.16) possibly_damaging(0.656) TCGA-WE-AAA0-06 5 40945463 40945463 A T C7 Missense_Mutation p.K244I 0.18 tolerated(0.06) possibly_damaging(0.515) TCGA-WE-AAA0-06 5 41019067 41019067 T A MROH2B Missense_Mutation p.N832I 0.13 tolerated(0.06) benign(0.062) TCGA-WE-AAA0-06 5 41055956 41055956 G A MROH2B Silent p.A307A 0.34 TCGA-WE-AAA0-06 5 41154047 41154047 G A C6 Nonsense_Mutation p.Q719* 0.23 TCGA-WE-AAA0-06 5 41196000 41196000 C T C6 Missense_Mutation p.E161K 0.22 deleterious(0.01) probably_damaging(0.924) TCGA-WE-AAA0-06 5 41382546 41382546 A T PLCXD3 Missense_Mutation p.F65Y 0.29 deleterious(0) probably_damaging(0.985) TCGA-WE-AAA0-06 5 41917178 41917178 G A C5orf51 Missense_Mutation p.G221E 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-WE-AAA0-06 5 42806950 42806950 G A SEPP1 Intron 0.35 TCGA-WE-AAA0-06 5 54424257 54424257 C T CDC20B Missense_Mutation p.E296K 0.18 tolerated(0.06) benign(0.121) TCGA-WE-AAA0-06 5 6337269 6337269 G A CTD-2324F15.2 RNA 0.34 TCGA-WE-AAA0-06 5 647998 647998 A G CEP72 Missense_Mutation p.Q582R 0.31 deleterious(0.03) benign(0.086) TCGA-WE-AAA0-06 5 66479634 66479634 G A CD180 Missense_Mutation p.S346F 0.31 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 5 6750485 6750485 G A PAPD7 Missense_Mutation p.G327R 0.20 tolerated(0.29) benign(0.323) TCGA-WE-AAA0-06 5 68581272 68581272 C T CCDC125 Silent p.K374K 0.23 TCGA-WE-AAA0-06 5 68737526 68737526 T C MARVELD2 3'UTR 0.26 TCGA-WE-AAA0-06 5 75914040 75914040 G A F2RL2 Silent p.V164V 0.33 TCGA-WE-AAA0-06 5 78379070 78379070 G A BHMT2 Silent p.T218T 0.27 TCGA-WE-AAA0-06 5 79095486 79095486 G A CMYA5 3'UTR 0.29 TCGA-WE-AAA0-06 5 79378192 79378192 G A THBS4 Intron 0.30 TCGA-WE-AAA0-06 5 79855503 79855503 G A ANKRD34B Silent p.S112S 0.32 TCGA-WE-AAA0-06 5 82838005 82838005 C T VCAN Silent p.S3061S 0.22 TCGA-WE-AAA0-06 5 88057117 88057117 C A MEF2C Missense_Mutation p.C96F 0.36 deleterious(0) unknown(0) TCGA-WE-AAA0-06 5 89943551 89943551 C T GPR98 Missense_Mutation p.P1087S 0.20 benign(0.001) TCGA-WE-AAA0-06 5 92923921 92923921 C T NR2F1 Silent p.L254L 0.23 TCGA-WE-AAA0-06 5 96139224 96139224 G A ERAP1 Missense_Mutation p.P136S 0.46 tolerated(0.06) benign(0.021) TCGA-WE-AAA0-06 5 9630138 9630138 C T TAS2R1 Missense_Mutation p.E3K 0.29 tolerated(0.53) benign(0.05) TCGA-WE-AAA0-06 6 100368805 100368805 C T MCHR2 3'UTR 0.33 TCGA-WE-AAA0-06 6 100897552 100897552 A T SIM1 Silent p.I124I 0.38 TCGA-WE-AAA0-06 6 108218895 108218895 G A SEC63 Silent p.S466S 0.30 TCGA-WE-AAA0-06 6 108533349 108533349 A T SNX3 3'UTR 0.28 TCGA-WE-AAA0-06 6 10959021 10959021 G C SYCP2L Missense_Mutation p.R723T 0.23 deleterious(0.04) possibly_damaging(0.504) TCGA-WE-AAA0-06 6 110540945 110540945 A G CDC40 Missense_Mutation p.I405V 0.24 tolerated(0.6) benign(0.005) TCGA-WE-AAA0-06 6 116784702 116784702 C T FAM26F Missense_Mutation p.S261L 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-WE-AAA0-06 6 117023264 117023264 C T KPNA5 Missense_Mutation p.P173L 0.34 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 6 117127687 117127687 C T GPRC6A Missense_Mutation p.R394K 0.30 tolerated(0.91) benign(0.002) TCGA-WE-AAA0-06 6 117622224 117622224 G A ROS1 Nonsense_Mutation p.Q2216* 0.26 TCGA-WE-AAA0-06 6 117662453 117662453 C T ROS1 Missense_Mutation p.E1642K 0.33 tolerated(0.1) benign(0.027) TCGA-WE-AAA0-06 6 119327686 119327686 C T FAM184A Missense_Mutation p.E581K 0.24 tolerated(0.07) benign(0.096) TCGA-WE-AAA0-06 6 121768561 121768561 G A GJA1 Missense_Mutation p.D190N 0.20 tolerated(0.3) benign(0.002) TCGA-WE-AAA0-06 6 123653063 123653063 C G TRDN Missense_Mutation p.G478R 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.656) TCGA-WE-AAA0-06 6 128298173 128298173 G A PTPRK Silent p.I1252I 0.20 TCGA-WE-AAA0-06 6 133013699 133013699 G A VNN1 Missense_Mutation p.S284F 0.31 tolerated(0.07) benign(0.025) TCGA-WE-AAA0-06 6 134212965 134212965 G A TCF21 3'UTR 0.23 TCGA-WE-AAA0-06 6 137323407 137323407 G A IL20RA Missense_Mutation p.S317L 0.23 tolerated(1) benign(0) TCGA-WE-AAA0-06 6 138619867 138619867 G A KIAA1244 Missense_Mutation p.R1258Q 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA0-06 6 139175254 139175254 G A ECT2L Silent p.G387G 0.23 TCGA-WE-AAA0-06 6 143086069 143086069 G A HIVEP2 Silent p.G1795G 0.31 TCGA-WE-AAA0-06 6 144780094 144780094 T G UTRN Missense_Mutation p.S825A 0.29 tolerated(0.57) benign(0.001) TCGA-WE-AAA0-06 6 144783820 144783820 C T UTRN Missense_Mutation p.P962S 0.17 tolerated(0.56) benign(0.14) TCGA-WE-AAA0-06 6 151161469 151161469 C T PLEKHG1 Missense_Mutation p.P1199S 0.27 deleterious(0.02) benign(0.342) TCGA-WE-AAA0-06 6 151671775 151671775 C T AKAP12 Missense_Mutation p.P750L 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 6 152949488 152949488 C T SYNE1 5'UTR 0.36 TCGA-WE-AAA0-06 6 159655309 159655309 C T FNDC1 Silent p.S1255S 0.33 TCGA-WE-AAA0-06 6 160328649 160328649 C T MAS1 Missense_Mutation p.S221F 0.30 tolerated(0.75) benign(0.016) TCGA-WE-AAA0-06 6 168227191 168227191 A C MLLT4 5'Flank 0.21 TCGA-WE-AAA0-06 6 169648866 169648866 G A THBS2 Silent p.F85F 0.35 TCGA-WE-AAA0-06 6 17781097 17781097 G A KIF13A Missense_Mutation p.S1237F 0.17 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA0-06 6 22297270 22297270 T G PRL 5'UTR 0.50 TCGA-WE-AAA0-06 6 24523151 24523151 A G ALDH5A1 Missense_Mutation p.K404E 0.31 deleterious(0) possibly_damaging(0.664) TCGA-WE-AAA0-06 6 25727309 25727309 C T HIST1H2BA Missense_Mutation p.S58L 0.22 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-WE-AAA0-06 6 27369107 27369107 C T ZNF391 Missense_Mutation p.L320F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-WE-AAA0-06 6 27879269 27879269 A T OR2B2 Missense_Mutation p.F277I 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-WE-AAA0-06 6 27879270 27879270 G A OR2B2 Silent p.L276L 0.18 TCGA-WE-AAA0-06 6 28295304 28295304 C T ZSCAN31 Missense_Mutation p.D130N 0.25 tolerated(0.46) benign(0.145) TCGA-WE-AAA0-06 6 28472176 28472176 G A GPX6 Silent p.L187L 0.23 TCGA-WE-AAA0-06 6 28497379 28497379 C T GPX5 Missense_Mutation p.P80L 0.25 tolerated(0.8) benign(0.026) TCGA-WE-AAA0-06 6 28543162 28543162 C T SCAND3 Silent p.R440R 0.28 TCGA-WE-AAA0-06 6 29364748 29364748 C T OR12D2 Missense_Mutation p.S91F 0.55 deleterious(0) benign(0.295) TCGA-WE-AAA0-06 6 29394439 29394439 G A OR11A1 3'UTR 0.22 TCGA-WE-AAA0-06 6 30115314 30115314 G A TRIM40 Silent p.L199L 0.23 TCGA-WE-AAA0-06 6 30166486 30166486 G A TRIM26 Missense_Mutation p.P132L 0.44 tolerated(0.69) benign(0.015) TCGA-WE-AAA0-06 6 30630442 30630442 G A DHX16 Silent p.L502L 0.22 TCGA-WE-AAA0-06 6 31431950 31431950 C T HCP5 RNA 0.21 TCGA-WE-AAA0-06 6 31636341 31636341 C T CSNK2B-LY6G5B-1181 Silent p.N67N 0.24 TCGA-WE-AAA0-06 6 31636342 31636342 C T CSNK2B-LY6G5B-1181 Nonsense_Mutation p.Q68* 0.23 TCGA-WE-AAA0-06 6 31855632 31855632 G A EHMT2 Missense_Mutation p.L618F 0.21 tolerated(0.37) possibly_damaging(0.624) TCGA-WE-AAA0-06 6 31926862 31926862 G A SKIV2L 5'UTR 0.37 TCGA-WE-AAA0-06 6 32905200 32905200 G A HLA-DMB Missense_Mutation p.P124L 0.23 tolerated(1) benign(0.296) TCGA-WE-AAA0-06 6 33144260 33144260 G A COL11A2 Missense_Mutation p.P621S 0.17 possibly_damaging(0.803) TCGA-WE-AAA0-06 6 33148752 33148752 C G COL11A2 Missense_Mutation p.E318Q 0.34 possibly_damaging(0.607) TCGA-WE-AAA0-06 6 34214334 34214334 G A C6orf1 Missense_Mutation p.P146L 0.14 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-WE-AAA0-06 6 34214335 34214335 G A C6orf1 Missense_Mutation p.P146S 0.14 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-WE-AAA0-06 6 348853 348853 G A DUSP22 Intron 0.15 TCGA-WE-AAA0-06 6 36982480 36982480 G A FGD2 Missense_Mutation p.M294I 0.24 deleterious(0.03) probably_damaging(0.918) TCGA-WE-AAA0-06 6 37430625 37430625 T C CMTR1 Missense_Mutation p.L449P 0.24 tolerated(0.08) probably_damaging(0.989) TCGA-WE-AAA0-06 6 3850897 3850897 G C FAM50B Missense_Mutation p.K284N 0.31 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA0-06 6 38783291 38783291 G T DNAH8 Missense_Mutation p.M910I 0.18 benign(0.001) TCGA-WE-AAA0-06 6 38831667 38831667 C T DNAH8 Missense_Mutation p.S1893F 0.28 probably_damaging(0.997) TCGA-WE-AAA0-06 6 38854607 38854607 G A DNAH8 Missense_Mutation p.G2550E 0.32 probably_damaging(1) TCGA-WE-AAA0-06 6 39159409 39159409 G A KCNK5 Missense_Mutation p.H253Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 6 39159410 39159410 G T KCNK5 Silent p.V252V 0.21 TCGA-WE-AAA0-06 6 39513398 39513398 C G KIF6 Silent p.A416A 0.11 TCGA-WE-AAA0-06 6 41165918 41165918 C T TREML2 Missense_Mutation p.R102Q 0.09 deleterious(0.01) possibly_damaging(0.883) TCGA-WE-AAA0-06 6 42236881 42236881 A G TRERF1 Missense_Mutation p.F150L 0.31 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-WE-AAA0-06 6 42883851 42883851 C T PTCRA Missense_Mutation p.P15L 0.28 tolerated(0.27) unknown(0) TCGA-WE-AAA0-06 6 43400093 43400093 C T ABCC10 Silent p.S125S 0.32 TCGA-WE-AAA0-06 6 43413047 43413047 C T ABCC10 Missense_Mutation p.L1009F 0.38 deleterious(0.05) benign(0.2) TCGA-WE-AAA0-06 6 44253769 44253769 G A TCTE1 Missense_Mutation p.L260F 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-WE-AAA0-06 6 45922958 45922958 G A CLIC5 Silent p.I188I 0.19 TCGA-WE-AAA0-06 6 46660161 46660161 G A TDRD6 Silent p.K1432K 0.27 TCGA-WE-AAA0-06 6 46826933 46826933 G A GPR116 Missense_Mutation p.P903S 0.29 tolerated(1) benign(0.215) TCGA-WE-AAA0-06 6 46826934 46826934 G A GPR116 Silent p.F902F 0.29 TCGA-WE-AAA0-06 6 53989554 53989554 C T MLIP Missense_Mutation p.S168F 0.38 deleterious(0) probably_damaging(0.98) TCGA-WE-AAA0-06 6 55223830 55223830 C T GFRAL Silent p.I282I 0.31 TCGA-WE-AAA0-06 6 55406875 55406875 C T HMGCLL1 Missense_Mutation p.G88R 0.19 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 6 55739621 55739621 G A BMP5 Missense_Mutation p.L15F 0.26 tolerated(0.11) benign(0.001) TCGA-WE-AAA0-06 6 56846620 56846620 C T BEND6 Silent p.I4I 0.25 TCGA-WE-AAA0-06 6 57246957 57246957 G A PRIM2 Silent p.K228K 0.10 TCGA-WE-AAA0-06 6 6145795 6145795 C T F13A1 3'UTR 0.31 TCGA-WE-AAA0-06 6 63990807 63990807 C T LGSN Missense_Mutation p.E217K 0.29 tolerated(0.07) possibly_damaging(0.77) TCGA-WE-AAA0-06 6 69640495 69640495 C T BAI3 Nonsense_Mutation p.R268* 0.19 TCGA-WE-AAA0-06 6 70639541 70639541 C T COL19A1 Silent p.F205F 0.33 TCGA-WE-AAA0-06 6 73332188 73332188 G A KCNQ5 Missense_Mutation p.G91R 0.40 deleterious(0) benign(0.382) TCGA-WE-AAA0-06 6 73787554 73787554 G A KCNQ5 Missense_Mutation p.E288K 0.30 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 6 74063734 74063734 G A DPPA5 Missense_Mutation p.P45L 0.24 deleterious(0.02) benign(0.112) TCGA-WE-AAA0-06 6 74476491 74476491 C T CD109 Missense_Mutation p.L448F 0.21 deleterious(0.03) benign(0.071) TCGA-WE-AAA0-06 6 7568772 7568772 A C DSP Missense_Mutation p.S457R 0.22 benign(0.172) TCGA-WE-AAA0-06 6 7583303 7583303 G A DSP Silent p.Q1936Q 0.23 TCGA-WE-AAA0-06 6 7585987 7585987 C T DSP Missense_Mutation p.S2831L 0.24 probably_damaging(0.945) TCGA-WE-AAA0-06 6 76608089 76608089 G A MYO6 Splice_Site p.X1046_splice 0.16 TCGA-WE-AAA0-06 6 7880648 7880648 G A BMP6 3'UTR 0.16 TCGA-WE-AAA0-06 6 79664959 79664959 C T PHIP Missense_Mutation p.R1298Q 0.24 tolerated(0.37) probably_damaging(0.978) TCGA-WE-AAA0-06 6 80656901 80656901 G A ELOVL4 Silent p.I32I 0.29 TCGA-WE-AAA0-06 6 82943929 82943929 G A IBTK Missense_Mutation p.A122V 0.30 tolerated(0.88) benign(0.003) TCGA-WE-AAA0-06 6 88775955 88775955 G A SPACA1 Missense_Mutation p.E263K 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.804) TCGA-WE-AAA0-06 6 90422965 90422965 C T MDN1 Missense_Mutation p.V2374I 0.16 benign(0.434) TCGA-WE-AAA0-06 6 90422966 90422966 A T MDN1 Silent p.I2373I 0.15 TCGA-WE-AAA0-06 6 90459288 90459288 G A MDN1 Missense_Mutation p.P1197S 0.22 probably_damaging(1) TCGA-WE-AAA0-06 6 90661413 90661413 C T BACH2 Missense_Mutation p.D138N 0.23 tolerated(0.09) probably_damaging(0.974) TCGA-WE-AAA0-06 6 90661414 90661414 C T BACH2 Silent p.E137E 0.23 TCGA-WE-AAA0-06 6 94124436 94124436 G A EPHA7 Silent p.S49S 0.36 TCGA-WE-AAA0-06 6 96651059 96651059 C T FUT9 Missense_Mutation p.R10C 0.30 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 6 97247461 97247461 T G GPR63 Missense_Mutation p.E49D 0.29 tolerated_low_confidence(0.66) benign(0) TCGA-WE-AAA0-06 7 100456701 100456701 C T SLC12A9 Missense_Mutation p.P299S 0.36 deleterious(0) probably_damaging(0.989) TCGA-WE-AAA0-06 7 100677885 100677885 C T MUC17 Missense_Mutation p.S1063L 0.38 benign(0.01) TCGA-WE-AAA0-06 7 100839271 100839271 C T MOGAT3 Missense_Mutation p.E328K 0.31 tolerated(0.27) benign(0.055) TCGA-WE-AAA0-06 7 105103165 105103165 C T PUS7 Missense_Mutation p.D554N 0.35 deleterious(0) probably_damaging(0.976) TCGA-WE-AAA0-06 7 1132308 1132308 C G GPER1 Missense_Mutation p.S315C 0.20 deleterious(0.05) probably_damaging(1) TCGA-WE-AAA0-06 7 113518205 113518205 C T PPP1R3A Missense_Mutation p.G981E 0.29 tolerated(0.84) benign(0.012) TCGA-WE-AAA0-06 7 114298219 114298219 C T FOXP2 Silent p.T480T 0.21 TCGA-WE-AAA0-06 7 11446980 11446980 G A THSD7A Missense_Mutation p.S1290F 0.20 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA0-06 7 11582597 11582597 C T THSD7A Missense_Mutation p.G534E 0.38 deleterious(0) possibly_damaging(0.461) TCGA-WE-AAA0-06 7 11630129 11630129 C T THSD7A Missense_Mutation p.E471K 0.40 tolerated(0.24) benign(0.047) TCGA-WE-AAA0-06 7 117008702 117008702 C T ASZ1 Silent p.Q375Q 0.33 TCGA-WE-AAA0-06 7 120965438 120965438 G A WNT16 5'Flank 0.31 TCGA-WE-AAA0-06 7 121652813 121652813 C T PTPRZ1 Missense_Mutation p.S1238F 0.35 tolerated_low_confidence(0.07) benign(0.002) TCGA-WE-AAA0-06 7 123508544 123508544 C T HYAL4 Missense_Mutation p.P73S 0.21 tolerated(0.1) benign(0.03) TCGA-WE-AAA0-06 7 126086214 126086214 C T GRM8 Silent p.V881V 0.26 TCGA-WE-AAA0-06 7 128484309 128484309 G A FLNC Missense_Mutation p.D1061N 0.25 tolerated(0.09) possibly_damaging(0.773) TCGA-WE-AAA0-06 7 128852121 128852121 C T SMO Silent p.T731T 0.14 TCGA-WE-AAA0-06 7 129769314 129769314 C T KLHDC10 Silent p.I339I 0.25 TCGA-WE-AAA0-06 7 129987683 129987683 C T CPA5 Nonsense_Mutation p.Q65* 0.30 TCGA-WE-AAA0-06 7 131853065 131853065 C T PLXNA4 Silent p.R1428R 0.20 TCGA-WE-AAA0-06 7 131866180 131866180 C T PLXNA4 Missense_Mutation p.G1151E 0.23 deleterious(0.03) probably_damaging(1) TCGA-WE-AAA0-06 7 135390975 135390975 C T SLC13A4 Missense_Mutation p.V147M 0.17 tolerated(0.77) probably_damaging(0.968) TCGA-WE-AAA0-06 7 135390976 135390976 C T SLC13A4 Missense_Mutation p.M146I 0.17 deleterious(0) possibly_damaging(0.877) TCGA-WE-AAA0-06 7 136699661 136699661 C T CHRM2 Missense_Mutation p.P17S 0.18 tolerated(0.1) probably_damaging(1) TCGA-WE-AAA0-06 7 136700922 136700922 C T CHRM2 Missense_Mutation p.P437L 0.26 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 7 138732513 138732513 G A ZC3HAV1 Silent p.L846L 0.18 TCGA-WE-AAA0-06 7 140453135 140453135 C T BRAF Silent p.V600V 0.35 TCGA-WE-AAA0-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-WE-AAA0-06 7 141673373 141673373 C T TAS2R38 Silent p.V39V 0.31 TCGA-WE-AAA0-06 7 141765260 141765260 C T MGAM Missense_Mutation p.S1537F 0.26 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 7 141794617 141794617 G A MGAM Missense_Mutation p.G1575E 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 7 142124559 142124559 G A TRBV6-8 Missense_Mutation p.L3F 0.20 tolerated(0.71) benign(0.003) TCGA-WE-AAA0-06 7 142239823 142239823 C T TRBV9 Silent p.V19V 0.25 TCGA-WE-AAA0-06 7 142247398 142247398 C T TRBV7-3 Missense_Mutation p.G20S 0.21 TCGA-WE-AAA0-06 7 142458466 142458466 C T PRSS1 Missense_Mutation p.S34F 0.06 deleterious(0) possibly_damaging(0.527) TCGA-WE-AAA0-06 7 142749748 142749748 C T OR6V1 Missense_Mutation p.S104F 0.21 tolerated(0.21) benign(0.328) TCGA-WE-AAA0-06 7 142750244 142750244 G A OR6V1 Silent p.R269R 0.37 TCGA-WE-AAA0-06 7 143141473 143141473 C T TAS2R60 Missense_Mutation p.R310C 0.23 tolerated(0.2) benign(0) TCGA-WE-AAA0-06 7 143633185 143633185 C T OR2F2 Missense_Mutation p.P287L 0.26 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 7 143771931 143771931 G T OR2A25 Missense_Mutation p.V207L 0.25 tolerated(0.25) benign(0.075) TCGA-WE-AAA0-06 7 143772018 143772018 G T OR2A25 Missense_Mutation p.A236S 0.30 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA0-06 7 143807369 143807369 G A OR2A2 Missense_Mutation p.G232S 0.22 deleterious(0.01) possibly_damaging(0.814) TCGA-WE-AAA0-06 7 144096177 144096177 G A NOBOX Silent p.P445P 0.22 TCGA-WE-AAA0-06 7 144288651 144288651 G A TPK1 Silent p.I122I 0.26 TCGA-WE-AAA0-06 7 149490678 149490678 G A SSPO RNA 0.22 TCGA-WE-AAA0-06 7 150490280 150490280 G A TMEM176B Missense_Mutation p.R166C 0.15 tolerated(0.2) benign(0.002) TCGA-WE-AAA0-06 7 150555116 150555116 C T AOC1 Silent p.L520L 0.24 TCGA-WE-AAA0-06 7 154598819 154598819 G A DPP6 Missense_Mutation p.E555K 0.39 tolerated(1) benign(0.079) TCGA-WE-AAA0-06 7 156589167 156589167 G A LMBR1 Silent p.S113S 0.20 TCGA-WE-AAA0-06 7 157000518 157000518 A T UBE3C Silent p.P566P 0.27 TCGA-WE-AAA0-06 7 157931188 157931188 G A PTPRN2 Silent p.L310L 0.30 TCGA-WE-AAA0-06 7 158896465 158896465 G A VIPR2 Missense_Mutation p.P114S 0.21 tolerated(0.88) benign(0.003) TCGA-WE-AAA0-06 7 17908089 17908089 G A SNX13 Missense_Mutation p.L260F 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-WE-AAA0-06 7 2406199 2406199 G A EIF3B Silent p.L443L 0.22 TCGA-WE-AAA0-06 7 24324916 24324916 C T NPY Silent p.L19L 0.26 TCGA-WE-AAA0-06 7 2979469 2979469 G A CARD11 Missense_Mutation p.R260W 0.27 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 7 31009477 31009477 C T GHRHR Intron 0.30 TCGA-WE-AAA0-06 7 33427653 33427653 T C BBS9 Missense_Mutation p.V671A 0.23 tolerated(0.91) benign(0.009) TCGA-WE-AAA0-06 7 34724253 34724253 G A NPSR1 Silent p.K79K 0.33 TCGA-WE-AAA0-06 7 34888123 34888123 C T NPSR1 Silent p.F291F 0.23 TCGA-WE-AAA0-06 7 36552914 36552914 C T AOAH Missense_Mutation p.E558K 0.37 deleterious(0.04) probably_damaging(0.973) TCGA-WE-AAA0-06 7 38948768 38948768 C T VPS41 Missense_Mutation p.E3K 0.24 tolerated_low_confidence(0.2) benign(0.052) TCGA-WE-AAA0-06 7 39379323 39379323 C T POU6F2 Silent p.P198P 0.30 TCGA-WE-AAA0-06 7 4273018 4273018 G C SDK1 Missense_Mutation p.G1987R 0.45 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 7 43906215 43906215 G A URGCP-MRPS24 3'UTR 0.38 TCGA-WE-AAA0-06 7 44268635 44268635 G A CAMK2B Intron 0.50 TCGA-WE-AAA0-06 7 44268636 44268636 G T CAMK2B Intron 0.50 TCGA-WE-AAA0-06 7 4917330 4917330 C T RADIL Nonsense_Mutation p.W147* 0.28 TCGA-WE-AAA0-06 7 4917331 4917331 C T RADIL Nonsense_Mutation p.W147* 0.28 TCGA-WE-AAA0-06 7 4947176 4947176 C T MMD2 Missense_Mutation p.G222S 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 7 50450278 50450278 C T IKZF1 Silent p.F154F 0.29 TCGA-WE-AAA0-06 7 53103484 53103484 C T POM121L12 Silent p.P40P 0.16 TCGA-WE-AAA0-06 7 56022804 56022804 C T MRPS17 Missense_Mutation p.P109L 0.20 tolerated_low_confidence(0.18) benign(0.005) TCGA-WE-AAA0-06 7 57200032 57200032 A C ZNF479 5'UTR 0.18 TCGA-WE-AAA0-06 7 6031676 6031676 C G PMS2 Missense_Mutation p.V306L 0.19 deleterious(0.03) probably_damaging(0.92) TCGA-WE-AAA0-06 7 6042130 6042130 G A PMS2 Missense_Mutation p.S164F 0.28 tolerated(0.34) benign(0.021) TCGA-WE-AAA0-06 7 6048881 6048881 C T AIMP2 5'UTR 0.23 TCGA-WE-AAA0-06 7 71488663 71488663 C T CALN1 Silent p.T160T 0.30 TCGA-WE-AAA0-06 7 77538198 77538198 C G PHTF2 Silent p.L144L 0.43 TCGA-WE-AAA0-06 7 813692 813692 C T HEATR2 Missense_Mutation p.P647S 0.25 tolerated(0.57) benign(0.005) TCGA-WE-AAA0-06 7 82455940 82455940 A G PCLO Missense_Mutation p.Y4794H 0.65 unknown(0) TCGA-WE-AAA0-06 7 82545061 82545061 G A PCLO Nonsense_Mutation p.R4081* 0.28 TCGA-WE-AAA0-06 7 8790800 8790800 G A NXPH1 Missense_Mutation p.D73N 0.34 tolerated(0.1) benign(0.017) TCGA-WE-AAA0-06 7 92027691 92027691 C T ANKIB1 Missense_Mutation p.P900S 0.47 tolerated_low_confidence(0.11) benign(0.025) TCGA-WE-AAA0-06 7 92761429 92761429 C T SAMD9L Missense_Mutation p.E1286K 0.30 deleterious(0.01) possibly_damaging(0.591) TCGA-WE-AAA0-06 7 98509802 98509802 C T TRRAP Missense_Mutation p.S722F 0.53 probably_damaging(0.984) TCGA-WE-AAA0-06 7 99355829 99355829 C T CYP3A4 Missense_Mutation p.G480E 0.38 tolerated(0.37) benign(0.024) TCGA-WE-AAA0-06 8 100994222 100994222 G A RGS22 Silent p.A1101A 0.25 TCGA-WE-AAA0-06 8 100994223 100994223 G A RGS22 Missense_Mutation p.A1101V 0.25 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 101299970 101299970 G A RNF19A Missense_Mutation p.P145S 0.28 deleterious(0.01) probably_damaging(0.913) TCGA-WE-AAA0-06 8 101624235 101624235 G A SNX31 Nonsense_Mutation p.R202* 0.21 TCGA-WE-AAA0-06 8 102678923 102678923 G A GRHL2 Missense_Mutation p.E624K 0.18 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 8 103289413 103289413 G A UBR5 Missense_Mutation p.P2099L 0.33 deleterious(0) probably_damaging(0.966) TCGA-WE-AAA0-06 8 10469863 10469863 G A RP1L1 Missense_Mutation p.S582L 0.44 benign(0.077) TCGA-WE-AAA0-06 8 105261773 105261773 G A RIMS2 Silent p.R1216R 0.31 TCGA-WE-AAA0-06 8 105361645 105361645 G A DCSTAMP Missense_Mutation p.E289K 0.35 deleterious(0) probably_damaging(0.952) TCGA-WE-AAA0-06 8 106456574 106456574 A T ZFPM2 Missense_Mutation p.Q89L 0.38 tolerated(0.38) benign(0.013) TCGA-WE-AAA0-06 8 106815524 106815524 G A ZFPM2 Missense_Mutation p.D1072N 0.25 tolerated(0.82) benign(0) TCGA-WE-AAA0-06 8 110457381 110457381 A G PKHD1L1 Silent p.G1761G 0.31 TCGA-WE-AAA0-06 8 110457786 110457786 C T PKHD1L1 Silent p.I1896I 0.38 TCGA-WE-AAA0-06 8 110463272 110463272 C T PKHD1L1 Missense_Mutation p.P2082S 0.23 tolerated(0.71) benign(0.006) TCGA-WE-AAA0-06 8 110476910 110476910 C T PKHD1L1 Missense_Mutation p.H2617Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 8 110519939 110519939 G A PKHD1L1 Missense_Mutation p.R3681K 0.25 tolerated(1) benign(0.002) TCGA-WE-AAA0-06 8 110519945 110519945 C A PKHD1L1 Missense_Mutation p.S3683Y 0.26 deleterious(0) possibly_damaging(0.73) TCGA-WE-AAA0-06 8 110530403 110530403 C T PKHD1L1 Silent p.F3899F 0.16 TCGA-WE-AAA0-06 8 113326803 113326803 G A CSMD3 Silent p.V2468V 0.31 TCGA-WE-AAA0-06 8 119391900 119391900 C T SAMD12 Missense_Mutation p.R121Q 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-WE-AAA0-06 8 119452175 119452175 G A SAMD12 Missense_Mutation p.P73L 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-WE-AAA0-06 8 119452176 119452176 G A SAMD12 Missense_Mutation p.P73S 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-WE-AAA0-06 8 124113168 124113168 G A TBC1D31 Missense_Mutation p.G318E 0.43 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 8 124238735 124238735 C T ZHX1-C8ORF76 Missense_Mutation p.S286N 0.17 tolerated_low_confidence(0.15) benign(0.007) TCGA-WE-AAA0-06 8 124992923 124992923 G A FER1L6 Missense_Mutation p.D428N 0.26 deleterious(0.05) possibly_damaging(0.628) TCGA-WE-AAA0-06 8 125076647 125076647 C T FER1L6 Missense_Mutation p.P1130S 0.17 tolerated(0.22) benign(0.002) TCGA-WE-AAA0-06 8 131073287 131073287 G A ASAP1 Silent p.S910S 0.16 TCGA-WE-AAA0-06 8 131792878 131792878 C T ADCY8 Missense_Mutation p.G1172R 0.44 deleterious(0) benign(0.021) TCGA-WE-AAA0-06 8 139164048 139164048 G A FAM135B Silent p.N890N 0.22 TCGA-WE-AAA0-06 8 139164757 139164757 A T FAM135B Missense_Mutation p.I654N 0.26 tolerated(0.07) benign(0) TCGA-WE-AAA0-06 8 139190921 139190921 G A FAM135B Missense_Mutation p.P296S 0.35 deleterious(0.02) possibly_damaging(0.87) TCGA-WE-AAA0-06 8 141231595 141231595 G A TRAPPC9 Missense_Mutation p.P938L 0.15 tolerated(0.42) benign(0.116) TCGA-WE-AAA0-06 8 142229821 142229821 G A SLC45A4 Missense_Mutation p.R129C 0.20 deleterious(0) possibly_damaging(0.844) TCGA-WE-AAA0-06 8 142486136 142486136 G A MROH5 Intron 0.35 TCGA-WE-AAA0-06 8 142505465 142505465 G A MROH5 Silent p.I92I 0.21 TCGA-WE-AAA0-06 8 144942173 144942173 G A EPPK1 Missense_Mutation p.P1750L 0.17 probably_damaging(0.997) TCGA-WE-AAA0-06 8 145113488 145113488 C T OPLAH Missense_Mutation p.G232R 0.16 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA0-06 8 145113489 145113489 C T OPLAH Silent p.R231R 0.16 TCGA-WE-AAA0-06 8 145535865 145535865 C T HSF1 Silent p.G359G 0.25 TCGA-WE-AAA0-06 8 145580360 145580360 G A FBXL6 Missense_Mutation p.P298L 0.39 tolerated(0.06) benign(0.139) TCGA-WE-AAA0-06 8 16026323 16026323 C T MSR1 Missense_Mutation p.D92N 0.35 tolerated(0.31) benign(0.006) TCGA-WE-AAA0-06 8 2041836 2041836 C T MYOM2 Silent p.I681I 0.35 TCGA-WE-AAA0-06 8 22035236 22035236 G A BMP1 Intron 0.27 TCGA-WE-AAA0-06 8 22035237 22035237 G A BMP1 Intron 0.27 TCGA-WE-AAA0-06 8 24253252 24253252 G A ADAMDEC1 Missense_Mutation p.G128E 0.41 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 8 26628159 26628159 G A ADRA1A Missense_Mutation p.P303L 0.38 deleterious(0.05) benign(0.159) TCGA-WE-AAA0-06 8 27888799 27888799 C T NUGGC Nonsense_Mutation p.W623* 0.38 TCGA-WE-AAA0-06 8 3009023 3009023 C T CSMD1 Missense_Mutation p.G1976E 0.35 probably_damaging(1) TCGA-WE-AAA0-06 8 3165230 3165230 C T CSMD1 Missense_Mutation p.G1313R 0.36 probably_damaging(0.979) TCGA-WE-AAA0-06 8 3226868 3226868 C T CSMD1 Missense_Mutation p.G936E 0.40 probably_damaging(0.954) TCGA-WE-AAA0-06 8 3265533 3265533 A C CSMD1 Silent p.T653T 0.38 TCGA-WE-AAA0-06 8 48771423 48771423 G A PRKDC Missense_Mutation p.P2110L 0.36 benign(0.299) TCGA-WE-AAA0-06 8 48883935 48883935 C T MCM4 Missense_Mutation p.S612F 0.47 deleterious(0) probably_damaging(0.992) TCGA-WE-AAA0-06 8 49644043 49644043 G A EFCAB1 Silent p.N26N 0.38 TCGA-WE-AAA0-06 8 49985434 49985434 G A C8orf22 Silent p.Q15Q 0.21 TCGA-WE-AAA0-06 8 52321633 52321633 C T PXDNL Missense_Mutation p.D851N 0.38 deleterious(0.01) benign(0.323) TCGA-WE-AAA0-06 8 52322009 52322009 C T PXDNL Silent p.A725A 0.26 TCGA-WE-AAA0-06 8 52387690 52387690 G A PXDNL Missense_Mutation p.S179F 0.26 deleterious(0.05) possibly_damaging(0.787) TCGA-WE-AAA0-06 8 53045808 53045808 G A ST18 Missense_Mutation p.S785F 0.32 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 53050002 53050002 C T ST18 Missense_Mutation p.G737E 0.41 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 53071518 53071518 G A ST18 Silent p.S582S 0.25 TCGA-WE-AAA0-06 8 53084687 53084687 G A ST18 Missense_Mutation p.P245L 0.30 tolerated(0.07) benign(0.002) TCGA-WE-AAA0-06 8 55538415 55538415 C T RP1 Missense_Mutation p.P658L 0.32 tolerated(0.33) benign(0.02) TCGA-WE-AAA0-06 8 55542844 55542844 C T RP1 Silent p.F2134F 0.20 TCGA-WE-AAA0-06 8 56436600 56436600 G A XKR4 Silent p.R589R 0.30 TCGA-WE-AAA0-06 8 57358397 57358397 C G PENK Missense_Mutation p.R39P 0.31 tolerated(0.1) benign(0.041) TCGA-WE-AAA0-06 8 59851964 59851964 T A TOX Missense_Mutation p.N103I 0.26 deleterious(0) probably_damaging(0.986) TCGA-WE-AAA0-06 8 59852010 59852010 C T TOX Missense_Mutation p.E88K 0.19 deleterious(0) benign(0.034) TCGA-WE-AAA0-06 8 6614836 6614836 G A AGPAT5 Missense_Mutation p.G341E 0.41 deleterious(0) probably_damaging(0.949) TCGA-WE-AAA0-06 8 69005913 69005913 C T PREX2 Missense_Mutation p.P775L 0.21 deleterious_low_confidence(0.02) benign(0.133) TCGA-WE-AAA0-06 8 69021844 69021844 T G PREX2 Silent p.V1044V 0.25 TCGA-WE-AAA0-06 8 70498601 70498601 G A SULF1 Missense_Mutation p.G141E 0.21 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 70501322 70501322 C T SULF1 Missense_Mutation p.P227L 0.28 deleterious(0) probably_damaging(0.977) TCGA-WE-AAA0-06 8 70514018 70514018 C T SULF1 Missense_Mutation p.R339C 0.29 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 70744590 70744590 C T SLCO5A1 Missense_Mutation p.V107M 0.41 tolerated_low_confidence(0.09) benign(0.281) TCGA-WE-AAA0-06 8 71520467 71520467 C T TRAM1 5'UTR 0.27 TCGA-WE-AAA0-06 8 73480322 73480322 C T KCNB2 Missense_Mutation p.S118L 0.23 deleterious(0) possibly_damaging(0.547) TCGA-WE-AAA0-06 8 73982125 73982125 C T SBSPON Missense_Mutation p.G198R 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 8 77616346 77616346 C T ZFHX4 Missense_Mutation p.P8L 0.19 possibly_damaging(0.851) TCGA-WE-AAA0-06 8 77763159 77763159 C T ZFHX4 Silent p.L1334L 0.20 TCGA-WE-AAA0-06 8 77766325 77766325 C T ZFHX4 Missense_Mutation p.P2390S 0.25 probably_damaging(0.991) TCGA-WE-AAA0-06 8 77766907 77766907 G A ZFHX4 Missense_Mutation p.D2584N 0.31 benign(0.178) TCGA-WE-AAA0-06 8 77776497 77776497 C T ZFHX4 Missense_Mutation p.P3516L 0.31 probably_damaging(0.996) TCGA-WE-AAA0-06 8 87242070 87242070 C T SLC7A13 Missense_Mutation p.G146E 0.39 deleterious(0) probably_damaging(0.984) TCGA-WE-AAA0-06 8 93023292 93023292 G A RUNX1T1 Missense_Mutation p.H177Y 0.28 deleterious(0) probably_damaging(0.951) TCGA-WE-AAA0-06 9 100092959 100092959 G A CCDC180 Silent p.E772E 0.21 TCGA-WE-AAA0-06 9 100889089 100889089 G A CORO2A Silent p.S396S 0.26 TCGA-WE-AAA0-06 9 103261118 103261118 G A TMEFF1 Missense_Mutation p.E90K 0.30 deleterious(0.02) probably_damaging(0.98) TCGA-WE-AAA0-06 9 104499688 104499688 C T GRIN3A Missense_Mutation p.G192R 0.26 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 105757659 105757659 G A CYLC2 5'UTR 0.19 TCGA-WE-AAA0-06 9 107521434 107521434 C T NIPSNAP3A Missense_Mutation p.P217S 0.27 tolerated(0.22) benign(0.168) TCGA-WE-AAA0-06 9 111962593 111962593 C T EPB41L4B Silent p.V656V 0.21 TCGA-WE-AAA0-06 9 112705405 112705405 G A PALM2 Missense_Mutation p.M312I 0.37 deleterious(0) possibly_damaging(0.779) TCGA-WE-AAA0-06 9 113169146 113169146 C T SVEP1 Missense_Mutation p.E2912K 0.28 benign(0.042) TCGA-WE-AAA0-06 9 113275258 113275258 G A SVEP1 Silent p.I417I 0.44 TCGA-WE-AAA0-06 9 113637696 113637696 C T LPAR1 3'UTR 0.19 TCGA-WE-AAA0-06 9 113637757 113637757 A G LPAR1 Missense_Mutation p.S347P 0.28 tolerated(0.21) benign(0.288) TCGA-WE-AAA0-06 9 114484823 114484823 G A C9orf84 Missense_Mutation p.S602F 0.29 deleterious(0) benign(0.368) TCGA-WE-AAA0-06 9 115812163 115812163 A G ZFP37 Intron 0.26 TCGA-WE-AAA0-06 9 117803337 117803337 C T TNC Missense_Mutation p.G1759R 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 120475859 120475859 G A TLR4 Missense_Mutation p.E485K 0.26 tolerated(0.05) benign(0.001) TCGA-WE-AAA0-06 9 122075576 122075576 C T BRINP1 Missense_Mutation p.V20M 0.37 deleterious_low_confidence(0.03) benign(0.05) TCGA-WE-AAA0-06 9 124979413 124979413 C T LHX6 Missense_Mutation p.E206K 0.22 tolerated(0.08) possibly_damaging(0.828) TCGA-WE-AAA0-06 9 125154597 125154597 G A PTGS1 Missense_Mutation p.G525E 0.34 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 125330666 125330666 G A OR1L8 Missense_Mutation p.L31F 0.31 deleterious(0.03) benign(0.049) TCGA-WE-AAA0-06 9 125424870 125424870 G A OR1L1 Silent p.R292R 0.28 TCGA-WE-AAA0-06 9 125486687 125486687 G A OR1L4 Nonsense_Mutation p.W140* 0.31 TCGA-WE-AAA0-06 9 125760939 125760939 G A RABGAP1 Missense_Mutation p.R423Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA0-06 9 127920649 127920649 C T PPP6C Missense_Mutation p.D121N 0.24 deleterious(0) probably_damaging(0.944) TCGA-WE-AAA0-06 9 130674600 130674600 C T ST6GALNAC4 Silent p.E186E 0.19 TCGA-WE-AAA0-06 9 13122151 13122151 C T MPDZ Missense_Mutation p.E1658K 0.26 deleterious(0) possibly_damaging(0.903) TCGA-WE-AAA0-06 9 131553892 131553892 C T TBC1D13 Silent p.L74L 0.27 TCGA-WE-AAA0-06 9 131770906 131770906 G A SH3GLB2 3'UTR 0.55 TCGA-WE-AAA0-06 9 131770907 131770907 G A SH3GLB2 3'UTR 0.55 TCGA-WE-AAA0-06 9 133333865 133333865 G A ASS1 Silent p.E84E 0.23 TCGA-WE-AAA0-06 9 134003831 134003831 C T NUP214 Silent p.S118S 0.37 TCGA-WE-AAA0-06 9 134019870 134019870 C T NUP214 Missense_Mutation p.P500S 0.27 benign(0) TCGA-WE-AAA0-06 9 135797292 135797292 C T TSC1 Missense_Mutation p.G193R 0.21 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 138395756 138395756 T C MRPS2 Missense_Mutation p.V223A 0.24 deleterious(0) probably_damaging(0.951) TCGA-WE-AAA0-06 9 139717995 139717995 G T RABL6 Missense_Mutation p.G50V 0.19 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 139909520 139909520 G A ABCA2 Missense_Mutation p.R1243W 0.20 deleterious(0.02) benign(0.016) TCGA-WE-AAA0-06 9 140672439 140672439 T A EHMT1 Silent p.T708T 0.30 TCGA-WE-AAA0-06 9 140672440 140672440 C T EHMT1 Missense_Mutation p.P709S 0.28 tolerated(0.54) benign(0.001) TCGA-WE-AAA0-06 9 14857570 14857570 C T FREM1 Missense_Mutation p.R270K 0.28 tolerated(0.2) benign(0.074) TCGA-WE-AAA0-06 9 19378784 19378784 C T RPS6 Missense_Mutation p.E91K 0.29 deleterious(0.03) possibly_damaging(0.49) TCGA-WE-AAA0-06 9 20413792 20413792 G C MLLT3 Missense_Mutation p.T351R 0.34 tolerated(0.32) possibly_damaging(0.536) TCGA-WE-AAA0-06 9 21367828 21367828 C T IFNA13 Missense_Mutation p.G61E 0.19 tolerated(0.27) benign(0.064) TCGA-WE-AAA0-06 9 21481375 21481375 C T IFNE Missense_Mutation p.E107K 0.26 deleterious(0.05) probably_damaging(0.927) TCGA-WE-AAA0-06 9 33466162 33466162 G A NOL6 Silent p.V757V 0.09 TCGA-WE-AAA0-06 9 34646701 34646701 C T GALT 5'UTR 0.21 TCGA-WE-AAA0-06 9 35061583 35061583 G A VCP Silent p.D395D 0.27 TCGA-WE-AAA0-06 9 36112449 36112449 C T RECK Missense_Mutation p.P679L 0.26 deleterious(0.01) possibly_damaging(0.779) TCGA-WE-AAA0-06 9 37708485 37708485 G C FRMPD1 Missense_Mutation p.V117L 0.30 tolerated(0.34) benign(0.013) TCGA-WE-AAA0-06 9 4118413 4118413 G A GLIS3 Silent p.R355R 0.26 TCGA-WE-AAA0-06 9 426954 426954 C T DOCK8 Silent p.I1437I 0.34 TCGA-WE-AAA0-06 9 4286286 4286286 G A GLIS3 Missense_Mutation p.S47L 0.29 deleterious(0.01) benign(0.016) TCGA-WE-AAA0-06 9 4688584 4688584 T G CDC37L1 Nonsense_Mutation p.Y162* 0.15 TCGA-WE-AAA0-06 9 5164140 5164140 C G INSL6 Missense_Mutation p.V139L 0.22 tolerated(0.08) benign(0) TCGA-WE-AAA0-06 9 71833206 71833206 C T TJP2 Silent p.T122T 0.23 TCGA-WE-AAA0-06 9 72472884 72472884 G A C9orf135 Nonsense_Mutation p.W147* 0.30 TCGA-WE-AAA0-06 9 72659066 72659066 G A MAMDC2 5'UTR 0.15 TCGA-WE-AAA0-06 9 72785575 72785575 C T MAMDC2 Intron 0.29 TCGA-WE-AAA0-06 9 74764438 74764438 C T GDA 5'UTR 0.36 TCGA-WE-AAA0-06 9 79320710 79320710 G A PRUNE2 Silent p.L2160L 0.25 TCGA-WE-AAA0-06 9 84199064 84199064 G A TLE1 3'UTR 0.26 TCGA-WE-AAA0-06 9 8524996 8524996 C T PTPRD Missense_Mutation p.G203E 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 9 90500154 90500154 C T SPATA31E1 Missense_Mutation p.P251L 0.22 deleterious(0.01) benign(0.216) TCGA-WE-AAA0-06 9 91606890 91606890 C T C9orf47 Missense_Mutation p.S199F 0.17 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-WE-AAA0-06 9 96009875 96009875 C T WNK2 Silent p.S531S 0.42 TCGA-WE-AAA0-06 9 97325667 97325667 C T FBP2 Missense_Mutation p.G261E 0.29 deleterious(0) possibly_damaging(0.897) TCGA-WE-AAA0-06 X 103267819 103267819 G A H2BFWT Silent p.T138T 0.57 TCGA-WE-AAA0-06 X 105280593 105280593 G A SERPINA7 Missense_Mutation p.L153F 0.58 tolerated(0.22) probably_damaging(0.981) TCGA-WE-AAA0-06 X 106016288 106016288 C T RNF128 Silent p.F210F 0.55 TCGA-WE-AAA0-06 X 106096852 106096852 T G TBC1D8B Missense_Mutation p.I742S 0.60 deleterious(0) probably_damaging(0.938) TCGA-WE-AAA0-06 X 107328086 107328086 A C PSMD10 3'UTR 0.80 TCGA-WE-AAA0-06 X 107829938 107829938 C T COL4A5 Missense_Mutation p.P376S 0.65 unknown(0) TCGA-WE-AAA0-06 X 107863630 107863630 G A COL4A5 Missense_Mutation p.G884E 0.76 unknown(0) TCGA-WE-AAA0-06 X 109694291 109694291 G T RGAG1 Missense_Mutation p.G149V 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-WE-AAA0-06 X 11308586 11308586 C T ARHGAP6 Intron 0.45 TCGA-WE-AAA0-06 X 115569048 115569048 C T SLC6A14 Silent p.L47L 0.55 TCGA-WE-AAA0-06 X 120008886 120008886 C T CT47B1 Silent p.E213E 0.61 TCGA-WE-AAA0-06 X 129147298 129147298 C T BCORL1 Missense_Mutation p.P184S 0.63 unknown(0) TCGA-WE-AAA0-06 X 129148648 129148648 C T BCORL1 Missense_Mutation p.P634S 0.55 probably_damaging(0.999) TCGA-WE-AAA0-06 X 129159347 129159347 G A BCORL1 Silent p.G1357G 0.54 TCGA-WE-AAA0-06 X 130222768 130222768 C T ARHGAP36 3'UTR 0.75 TCGA-WE-AAA0-06 X 130415711 130415711 C T IGSF1 Missense_Mutation p.S485N 0.58 tolerated(0.39) possibly_damaging(0.543) TCGA-WE-AAA0-06 X 13058031 13058031 T A FAM9C Nonsense_Mutation p.K112* 0.52 TCGA-WE-AAA0-06 X 132473253 132473253 G A GPC4 Missense_Mutation p.H93Y 0.64 tolerated(0.06) benign(0.089) TCGA-WE-AAA0-06 X 135429713 135429713 C T GPR112 Missense_Mutation p.S1283F 0.55 tolerated(0.27) benign(0.001) TCGA-WE-AAA0-06 X 138633290 138633290 C T F9 Missense_Mutation p.P197L 0.43 tolerated(0.26) benign(0) TCGA-WE-AAA0-06 X 138642933 138642933 G A F9 Missense_Mutation p.G253R 0.65 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 X 138687041 138687041 C T MCF2 Missense_Mutation p.E630K 0.56 tolerated(0.08) benign(0.344) TCGA-WE-AAA0-06 X 140967017 140967017 G A MAGEC3 Silent p.G105G 0.62 TCGA-WE-AAA0-06 X 140969366 140969366 G A MAGEC3 Silent p.E231E 0.59 TCGA-WE-AAA0-06 X 140985237 140985237 G A MAGEC3 Missense_Mutation p.E565K 0.58 deleterious(0.05) possibly_damaging(0.572) TCGA-WE-AAA0-06 X 140993296 140993296 C T MAGEC1 Nonsense_Mutation p.Q36* 0.61 TCGA-WE-AAA0-06 X 144337450 144337450 G A SPANXN1 3'UTR 0.57 TCGA-WE-AAA0-06 X 150912005 150912005 C T CNGA2 Missense_Mutation p.P344S 0.59 deleterious(0) probably_damaging(1) TCGA-WE-AAA0-06 X 151808865 151808865 T C GABRQ Missense_Mutation p.V59A 0.55 deleterious(0.05) possibly_damaging(0.467) TCGA-WE-AAA0-06 X 153764155 153764155 G A G6PD Silent p.F118F 0.45 TCGA-WE-AAA0-06 X 154113492 154113492 C T H2AFB1 Silent p.L56L 0.22 TCGA-WE-AAA0-06 X 16168655 16168655 C T GRPR Missense_Mutation p.S214F 0.63 tolerated(0.7) possibly_damaging(0.679) TCGA-WE-AAA0-06 X 26157748 26157748 G A MAGEB18 Missense_Mutation p.E216K 0.64 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA0-06 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.71 deleterious(0.02) benign(0.166) TCGA-WE-AAA0-06 X 3239099 3239099 G A MXRA5 Missense_Mutation p.P1543S 0.61 tolerated(0.75) benign(0.001) TCGA-WE-AAA0-06 X 34149163 34149163 G A FAM47A Silent p.L411L 0.65 TCGA-WE-AAA0-06 X 37027833 37027833 C T FAM47C Silent p.L450L 0.59 TCGA-WE-AAA0-06 X 39923790 39923790 G A BCOR Missense_Mutation p.P1101S 0.59 tolerated(0.35) benign(0.021) TCGA-WE-AAA0-06 X 43590526 43590526 A T MAOA Missense_Mutation p.E228D 0.62 deleterious(0.04) possibly_damaging(0.717) TCGA-WE-AAA0-06 X 46857529 46857529 G A JADE3 Missense_Mutation p.R45Q 0.51 deleterious(0.01) possibly_damaging(0.833) TCGA-WE-AAA0-06 X 47426389 47426389 C A ARAF Silent p.A244A 0.33 TCGA-WE-AAA0-06 X 50127785 50127785 C T DGKK RNA 0.52 TCGA-WE-AAA0-06 X 52826350 52826350 C T SPANXN5 Silent p.R13R 0.48 TCGA-WE-AAA0-06 X 55650333 55650333 G A FOXR2 Silent p.R63R 0.58 TCGA-WE-AAA0-06 X 71359764 71359764 C T NHSL2 Missense_Mutation p.S789F 0.57 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA0-06 X 73040545 73040545 C T XIST RNA 0.73 TCGA-WE-AAA0-06 X 73960745 73960745 G A KIAA2022 Missense_Mutation p.S1216F 0.69 deleterious(0.02) benign(0.021) TCGA-WE-AAA0-06 X 74520834 74520834 A G UPRT Intron 0.65 TCGA-WE-AAA0-06 X 8998376 8998376 C T FAM9B Silent p.R69R 0.53 TCGA-WE-AAA3-06 10 101451243 101451243 C T ENTPD7 Missense_Mutation p.P271S 0.51 tolerated(0.12) benign(0.31) TCGA-WE-AAA3-06 10 134898377 134898377 G A GPR123 5'Flank 0.40 TCGA-WE-AAA3-06 10 18242313 18242313 C T SLC39A12 Silent p.S36S 0.35 TCGA-WE-AAA3-06 10 18837128 18837128 A G NSUN6 Silent p.Y370Y 0.55 TCGA-WE-AAA3-06 10 24833069 24833069 G A KIAA1217 Missense_Mutation p.E1624K 0.21 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA3-06 10 31810292 31810292 C T ZEB1 Silent p.L678L 0.49 TCGA-WE-AAA3-06 10 46143848 46143848 G A ZFAND4 Missense_Mutation p.P155S 0.34 deleterious(0.01) benign(0.044) TCGA-WE-AAA3-06 10 48370691 48370691 G A ZNF488 Silent p.T53T 0.36 TCGA-WE-AAA3-06 10 51974624 51974624 G A ASAH2 Missense_Mutation p.P340L 0.43 deleterious(0.02) benign(0.049) TCGA-WE-AAA3-06 10 5437398 5437398 G A TUBAL3 Silent p.P96P 0.46 TCGA-WE-AAA3-06 10 5437399 5437399 G A TUBAL3 Missense_Mutation p.P96L 0.47 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-WE-AAA3-06 10 55568640 55568640 C T PCDH15 Missense_Mutation p.E658K 0.58 deleterious_low_confidence(0.01) unknown(0) TCGA-WE-AAA3-06 10 61835820 61835820 C T ANK3 Missense_Mutation p.E1607K 0.52 benign(0.122) TCGA-WE-AAA3-06 10 70645290 70645290 G A STOX1 Missense_Mutation p.G580S 0.47 tolerated(0.27) benign(0.08) TCGA-WE-AAA3-06 10 73548720 73548720 C T CDH23 Silent p.F1953F 0.46 TCGA-WE-AAA3-06 10 75568023 75568023 G A NDST2 Missense_Mutation p.P42S 0.55 tolerated(0.42) possibly_damaging(0.864) TCGA-WE-AAA3-06 10 76855403 76855403 G A DUSP13 Silent p.P158P 0.42 TCGA-WE-AAA3-06 10 82126831 82126831 T C DYDC2 3'UTR 0.52 TCGA-WE-AAA3-06 10 88854331 88854331 A C GLUD1 Missense_Mutation p.F66V 0.51 deleterious(0) possibly_damaging(0.784) TCGA-WE-AAA3-06 10 95347132 95347132 C T FFAR4 Silent p.I300I 0.48 TCGA-WE-AAA3-06 11 108044057 108044057 C T NPAT Missense_Mutation p.E552K 0.50 tolerated(0.35) benign(0.392) TCGA-WE-AAA3-06 11 117869776 117869776 C T IL10RA Missense_Mutation p.T386I 0.49 tolerated(0.19) benign(0.002) TCGA-WE-AAA3-06 11 117869777 117869777 C T IL10RA Silent p.T386T 0.47 TCGA-WE-AAA3-06 11 123894080 123894080 C T OR10G9 Missense_Mutation p.R121C 0.51 deleterious(0.01) probably_damaging(0.931) TCGA-WE-AAA3-06 11 1255037 1255037 G A MUC5B Missense_Mutation p.G779E 0.21 unknown(0) TCGA-WE-AAA3-06 11 133792086 133792086 C T IGSF9B Silent p.K771K 0.33 TCGA-WE-AAA3-06 11 1857306 1857306 G A SYT8 Intron 0.71 TCGA-WE-AAA3-06 11 20178167 20178167 C T DBX1 Missense_Mutation p.D248N 0.49 tolerated_low_confidence(0.54) benign(0.008) TCGA-WE-AAA3-06 11 31823165 31823165 C T PAX6 Missense_Mutation p.E115K 0.44 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 11 32953795 32953795 C T QSER1 Nonsense_Mutation p.Q202* 0.45 TCGA-WE-AAA3-06 11 33886267 33886267 G A LMO2 Silent p.I115I 0.55 TCGA-WE-AAA3-06 11 55798741 55798741 C T OR5AS1 Missense_Mutation p.P283S 0.50 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA3-06 11 55798846 55798846 C T OR5AS1 Missense_Mutation p.R318C 0.48 deleterious(0) benign(0.002) TCGA-WE-AAA3-06 11 63885103 63885103 G A FLRT1 Nonsense_Mutation p.W455* 0.55 TCGA-WE-AAA3-06 11 64627792 64627792 G A EHD1 Silent p.A173A 0.53 TCGA-WE-AAA3-06 11 64627793 64627793 G A EHD1 Missense_Mutation p.A173V 0.45 tolerated(0.05) benign(0.099) TCGA-WE-AAA3-06 11 73390707 73390707 C T RAB6A Missense_Mutation p.R185K 0.45 tolerated(1) benign(0.001) TCGA-WE-AAA3-06 11 75152221 75152221 G A GDPD5 Missense_Mutation p.P487L 0.25 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 11 75152223 75152223 G A GDPD5 Silent p.S486S 0.26 TCGA-WE-AAA3-06 11 75511517 75511517 C T DGAT2 Silent p.F377F 0.44 TCGA-WE-AAA3-06 11 8159883 8159883 C T RIC3 Silent p.G121G 0.44 TCGA-WE-AAA3-06 11 8704272 8704272 G A RPL27A 5'UTR 0.42 TCGA-WE-AAA3-06 12 101561948 101561948 C A SLC5A8 Missense_Mutation p.V416L 0.11 deleterious(0) benign(0.023) TCGA-WE-AAA3-06 12 107075897 107075897 C T RFX4 Intron 0.68 TCGA-WE-AAA3-06 12 108013806 108013806 C T BTBD11 Silent p.I832I 0.59 TCGA-WE-AAA3-06 12 109617087 109617087 C T ACACB Silent p.F544F 0.50 TCGA-WE-AAA3-06 12 112632804 112632804 G A HECTD4 Silent p.F2732F 0.55 TCGA-WE-AAA3-06 12 22078906 22078906 C T ABCC9 Missense_Mutation p.E126K 0.55 deleterious(0) probably_damaging(0.956) TCGA-WE-AAA3-06 12 33559900 33559900 G A SYT10 Nonsense_Mutation p.Q301* 0.51 TCGA-WE-AAA3-06 12 4543548 4543548 G A FGF6 Nonsense_Mutation p.Q154* 0.54 TCGA-WE-AAA3-06 12 7188138 7188138 C T C1R Missense_Mutation p.D554N 0.65 tolerated(0.54) benign(0.014) TCGA-WE-AAA3-06 12 71977917 71977917 C T LGR5 Silent p.S709S 0.61 TCGA-WE-AAA3-06 12 7362936 7362936 C T PEX5 3'UTR 0.50 TCGA-WE-AAA3-06 12 9016551 9016551 G A A2ML1 Missense_Mutation p.V1222M 0.65 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA3-06 13 109438026 109438026 C T MYO16 Missense_Mutation p.P162L 0.21 deleterious(0) probably_damaging(0.982) TCGA-WE-AAA3-06 13 111289531 111289531 C T CARKD Silent p.L276L 0.27 TCGA-WE-AAA3-06 13 21563270 21563270 G A LATS2 Missense_Mutation p.P217S 0.29 tolerated_low_confidence(0.32) benign(0) TCGA-WE-AAA3-06 13 51826016 51826016 C T FAM124A Silent p.I207I 0.32 TCGA-WE-AAA3-06 13 52440106 52440106 T A CCDC70 Missense_Mutation p.F198I 0.42 tolerated(0.88) benign(0.197) TCGA-WE-AAA3-06 13 53418775 53418775 G A PCDH8 Nonsense_Mutation p.Q1045* 0.22 TCGA-WE-AAA3-06 13 53418776 53418776 C T PCDH8 Silent p.L1044L 0.22 TCGA-WE-AAA3-06 13 78173488 78173488 C T SCEL Silent p.F274F 0.37 TCGA-WE-AAA3-06 14 100808895 100808895 C T WARS Missense_Mutation p.R318K 0.21 deleterious(0) probably_damaging(0.947) TCGA-WE-AAA3-06 14 102476785 102476785 C T DYNC1H1 Missense_Mutation p.P2132S 0.27 benign(0.01) TCGA-WE-AAA3-06 14 102568304 102568304 G A HSP90AA1 Missense_Mutation p.P92S 0.43 deleterious_low_confidence(0) unknown(0) TCGA-WE-AAA3-06 14 103406208 103406208 G A CDC42BPB Silent p.F1556F 0.32 TCGA-WE-AAA3-06 14 105676879 105676879 G A BRF1 3'UTR 0.31 TCGA-WE-AAA3-06 14 20502243 20502243 A G OR4K13 Silent p.V225V 0.28 TCGA-WE-AAA3-06 14 20779894 20779894 G A CCNB1IP1 Missense_Mutation p.P217S 0.32 tolerated_low_confidence(0.16) benign(0.011) TCGA-WE-AAA3-06 14 21467954 21467954 C T SLC39A2 Silent p.L57L 0.25 TCGA-WE-AAA3-06 14 23855803 23855803 G A MYH6 Silent p.I1560I 0.38 TCGA-WE-AAA3-06 14 23866779 23866779 G A MYH6 Silent p.S645S 0.31 TCGA-WE-AAA3-06 14 24424259 24424259 C T DHRS4 Silent p.I48I 0.28 TCGA-WE-AAA3-06 14 24543813 24543813 G A CPNE6 Nonsense_Mutation p.W191* 0.30 TCGA-WE-AAA3-06 14 38723828 38723828 C T CLEC14A Missense_Mutation p.G467E 0.26 tolerated_low_confidence(0.16) benign(0.039) TCGA-WE-AAA3-06 14 38724384 38724384 C T CLEC14A Missense_Mutation p.D282N 0.32 tolerated(0.1) possibly_damaging(0.857) TCGA-WE-AAA3-06 14 65253500 65253500 G A SPTB Silent p.S1061S 0.28 TCGA-WE-AAA3-06 14 70635002 70635002 C T SLC8A3 Silent p.E46E 0.27 TCGA-WE-AAA3-06 14 70925652 70925652 G A ADAM21 Missense_Mutation p.G479E 0.34 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 14 77844212 77844212 C T SAMD15 Silent p.L151L 0.39 TCGA-WE-AAA3-06 14 88693872 88693872 C T KCNK10 Silent p.G176G 0.34 TCGA-WE-AAA3-06 14 91780123 91780123 C T CCDC88C Silent p.R679R 0.44 TCGA-WE-AAA3-06 14 95111293 95111293 G A SERPINA13P Splice_Site 0.27 TCGA-WE-AAA3-06 14 99183661 99183661 C T C14orf177 3'UTR 0.30 TCGA-WE-AAA3-06 15 34654407 34654407 G A LPCAT4 Missense_Mutation p.R334W 0.30 deleterious(0) possibly_damaging(0.487) TCGA-WE-AAA3-06 15 38793487 38793487 C T RASGRP1 Missense_Mutation p.E514K 0.26 tolerated(0.06) benign(0.055) TCGA-WE-AAA3-06 15 39910341 39910341 C T FSIP1 Missense_Mutation p.E432K 0.47 tolerated(0.62) benign(0.002) TCGA-WE-AAA3-06 15 40846104 40846104 C T C15orf57 3'Flank 0.24 TCGA-WE-AAA3-06 15 44087311 44087311 C T SERINC4 Missense_Mutation p.G482R 0.18 tolerated(0.12) probably_damaging(0.968) TCGA-WE-AAA3-06 15 49716456 49716456 C T FGF7 5'UTR 0.45 TCGA-WE-AAA3-06 15 58256115 58256115 G C ALDH1A2 Missense_Mutation p.P352A 0.10 deleterious(0.03) possibly_damaging(0.607) TCGA-WE-AAA3-06 15 63948490 63948490 G A HERC1 Nonsense_Mutation p.R3223* 0.31 TCGA-WE-AAA3-06 15 82574577 82574577 A G FAM154B Missense_Mutation p.Q124R 0.38 tolerated(1) benign(0.004) TCGA-WE-AAA3-06 15 89424952 89424952 G A HAPLN3 Silent p.L43L 0.25 TCGA-WE-AAA3-06 15 93015412 93015412 G A C15orf32 Missense_Mutation p.E12K 0.18 tolerated_low_confidence(0.32) possibly_damaging(0.801) TCGA-WE-AAA3-06 15 95013586 95013586 C T MCTP2 Silent p.F795F 0.39 TCGA-WE-AAA3-06 16 12145888 12145888 C T SNX29 Silent p.F311F 0.42 TCGA-WE-AAA3-06 16 1393449 1393449 C T BAIAP3 Silent p.L476L 0.19 TCGA-WE-AAA3-06 16 14042348 14042348 T C ERCC4 3'UTR 0.19 TCGA-WE-AAA3-06 16 1838712 1838712 C T NUBP2 Silent p.P271P 0.26 TCGA-WE-AAA3-06 16 19474602 19474602 G A TMC5 Silent p.R383R 0.33 TCGA-WE-AAA3-06 16 21213293 21213293 C T ZP2 Missense_Mutation p.D447N 0.33 tolerated(0.22) benign(0.097) TCGA-WE-AAA3-06 16 23713837 23713837 G A ERN2 Missense_Mutation p.P367S 0.30 tolerated(0.45) benign(0.039) TCGA-WE-AAA3-06 16 26147552 26147552 G A HS3ST4 Missense_Mutation p.E452K 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-WE-AAA3-06 16 27445726 27445726 C T IL21R Silent p.I36I 0.32 TCGA-WE-AAA3-06 16 28602207 28602207 C T CCDC101 Missense_Mutation p.P239L 0.25 tolerated(0.15) possibly_damaging(0.78) TCGA-WE-AAA3-06 16 31097707 31097707 G A PRSS53 Missense_Mutation p.P205L 0.34 tolerated(0.07) benign(0.053) TCGA-WE-AAA3-06 16 321002 321002 A T RGS11 Missense_Mutation p.F320L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-WE-AAA3-06 16 32891910 32891910 G A SLC6A10P RNA 0.32 TCGA-WE-AAA3-06 16 3434409 3434409 C T ZSCAN32 Intron 0.28 TCGA-WE-AAA3-06 16 3452329 3452329 C T ZNF174 Nonsense_Mutation p.R109* 0.26 TCGA-WE-AAA3-06 16 4861769 4861769 G A GLYR1 Silent p.I439I 0.21 TCGA-WE-AAA3-06 16 66884531 66884531 A C CA7 Missense_Mutation p.H109P 0.55 deleterious(0) probably_damaging(0.994) TCGA-WE-AAA3-06 16 71609874 71609874 C T TAT Missense_Mutation p.M97I 0.55 tolerated(0.34) benign(0.001) TCGA-WE-AAA3-06 16 85699656 85699656 A C GSE1 Missense_Mutation p.K945Q 0.61 deleterious(0.03) possibly_damaging(0.881) TCGA-WE-AAA3-06 16 87364883 87364883 G A FBXO31 3'UTR 0.44 TCGA-WE-AAA3-06 17 10317237 10317237 C T MYH8 Missense_Mutation p.E377K 0.46 deleterious(0.01) possibly_damaging(0.877) TCGA-WE-AAA3-06 17 10400471 10400471 C T MYH1 Missense_Mutation p.G1524E 0.52 deleterious(0.01) possibly_damaging(0.673) TCGA-WE-AAA3-06 17 12847414 12847414 G A ARHGAP44 Silent p.G254G 0.59 TCGA-WE-AAA3-06 17 26862090 26862090 C T FOXN1 Missense_Mutation p.H501Y 0.27 tolerated(0.67) possibly_damaging(0.493) TCGA-WE-AAA3-06 17 29855658 29855658 G A RAB11FIP4 Silent p.K505K 0.32 TCGA-WE-AAA3-06 17 33679408 33679408 T G SLFN11 Missense_Mutation p.Q891H 0.28 deleterious(0.02) possibly_damaging(0.784) TCGA-WE-AAA3-06 17 34236366 34236366 G A AC015849.16 RNA 0.28 TCGA-WE-AAA3-06 17 36704873 36704873 G A SRCIN1 Missense_Mutation p.R1064C 0.35 deleterious(0) probably_damaging(0.984) TCGA-WE-AAA3-06 17 37331832 37331832 C T CACNB1 Missense_Mutation p.E471K 0.29 tolerated_low_confidence(0.4) benign(0.084) TCGA-WE-AAA3-06 17 38953241 38953241 G A KRT28 Missense_Mutation p.A302V 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA3-06 17 40043945 40043945 G A ACLY Silent p.I594I 0.28 TCGA-WE-AAA3-06 17 43923725 43923725 C T SPPL2C Silent p.L485L 0.27 TCGA-WE-AAA3-06 17 49059975 49059975 G A SPAG9 Silent p.S1049S 0.31 TCGA-WE-AAA3-06 17 54428127 54428127 G A ANKFN1 Nonsense_Mutation p.W66* 0.22 TCGA-WE-AAA3-06 17 55065175 55065175 C T SCPEP1 Silent p.L145L 0.29 TCGA-WE-AAA3-06 17 57676773 57676773 C T DHX40 Missense_Mutation p.H579Y 0.20 deleterious(0) probably_damaging(0.911) TCGA-WE-AAA3-06 17 59560324 59560324 G A TBX4 Missense_Mutation p.G362E 0.35 tolerated(0.72) possibly_damaging(0.548) TCGA-WE-AAA3-06 17 60348773 60348773 C T TBC1D3P2 RNA 0.25 TCGA-WE-AAA3-06 17 72350439 72350439 G A KIF19 Missense_Mutation p.S816N 0.30 tolerated(0.16) benign(0.282) TCGA-WE-AAA3-06 17 72613304 72613304 G A CD300E Missense_Mutation p.S114L 0.27 tolerated(0.34) benign(0.222) TCGA-WE-AAA3-06 17 74006289 74006289 C T EVPL Silent p.K999K 0.36 TCGA-WE-AAA3-06 17 77710945 77710945 G A ENPP7 Missense_Mutation p.E378K 0.30 tolerated(0.85) benign(0.033) TCGA-WE-AAA3-06 17 7792385 7792385 C T CHD3 Intron 0.51 TCGA-WE-AAA3-06 17 80274825 80274825 G A CD7 Missense_Mutation p.P39S 0.31 tolerated(0.39) benign(0.336) TCGA-WE-AAA3-06 18 10671666 10671666 C T PIEZO2 Missense_Mutation p.R2706Q 0.42 deleterious(0) possibly_damaging(0.822) TCGA-WE-AAA3-06 18 21513767 21513767 C T LAMA3 Silent p.V2910V 0.34 TCGA-WE-AAA3-06 18 23713980 23713980 C T PSMA8 Silent p.H17H 0.24 TCGA-WE-AAA3-06 18 29769990 29769990 A G MEP1B 5'UTR 0.53 TCGA-WE-AAA3-06 18 30092679 30092679 G A WBP11P1 RNA 0.22 TCGA-WE-AAA3-06 18 3126851 3126851 G A MYOM1 Missense_Mutation p.R947C 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-WE-AAA3-06 18 31323118 31323118 C T ASXL3 Silent p.I1102I 0.26 TCGA-WE-AAA3-06 18 44260037 44260037 G A ST8SIA5 Missense_Mutation p.R367C 0.28 possibly_damaging(0.901) TCGA-WE-AAA3-06 18 47116952 47116952 G A LIPG 3'UTR 0.25 TCGA-WE-AAA3-06 18 48190808 48190808 G A MAPK4 Silent p.E160E 0.28 TCGA-WE-AAA3-06 18 50936989 50936989 G A DCC Missense_Mutation p.D1035N 0.28 tolerated(0.06) benign(0.024) TCGA-WE-AAA3-06 18 54354115 54354115 C T WDR7 Silent p.S209S 0.27 TCGA-WE-AAA3-06 18 59157762 59157762 C T CDH20 5'UTR 0.29 TCGA-WE-AAA3-06 18 5960136 5960136 G A L3MBTL4 Missense_Mutation p.S554F 0.23 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 18 70461358 70461358 C T NETO1 Silent p.R211R 0.27 TCGA-WE-AAA3-06 19 10431604 10431604 G A RAVER1 Silent p.P516P 0.28 TCGA-WE-AAA3-06 19 11569314 11569314 C T ELAVL3 Missense_Mutation p.G149D 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-WE-AAA3-06 19 13039384 13039384 G A FARSA Silent p.V230V 0.40 TCGA-WE-AAA3-06 19 13446664 13446664 G A CACNA1A Silent p.I346I 0.24 TCGA-WE-AAA3-06 19 15067404 15067404 G A SLC1A6 Silent p.F351F 0.19 TCGA-WE-AAA3-06 19 16596008 16596008 T C CALR3 Missense_Mutation p.K153R 0.33 deleterious(0.04) benign(0.012) TCGA-WE-AAA3-06 19 16973723 16973723 C T SIN3B Missense_Mutation p.S432L 0.31 tolerated_low_confidence(0.78) benign(0) TCGA-WE-AAA3-06 19 1754774 1754774 C T ONECUT3 Silent p.S371S 0.33 TCGA-WE-AAA3-06 19 19338382 19338382 C T NCAN Silent p.S651S 0.32 TCGA-WE-AAA3-06 19 32845523 32845523 A G ZNF507 Missense_Mutation p.E596G 0.30 deleterious(0) probably_damaging(0.932) TCGA-WE-AAA3-06 19 32845567 32845567 T C ZNF507 Silent p.L611L 0.30 TCGA-WE-AAA3-06 19 3290320 3290320 C T CELF5 Silent p.I426I 0.22 TCGA-WE-AAA3-06 19 33202902 33202902 C T NUDT19 3'UTR 0.27 TCGA-WE-AAA3-06 19 34262900 34262900 G A CHST8 Silent p.K69K 0.21 TCGA-WE-AAA3-06 19 34262901 34262901 G A CHST8 Missense_Mutation p.E70K 0.20 tolerated(0.93) benign(0) TCGA-WE-AAA3-06 19 3730609 3730609 G A TJP3 Missense_Mutation p.G182E 0.27 deleterious(0) probably_damaging(0.967) TCGA-WE-AAA3-06 19 37870036 37870036 C T ZNF527 Silent p.F16F 0.27 TCGA-WE-AAA3-06 19 37916834 37916834 G A ZNF569 Silent p.F58F 0.36 TCGA-WE-AAA3-06 19 38985185 38985185 C T RYR1 Silent p.L2156L 0.28 TCGA-WE-AAA3-06 19 42857118 42857118 C T MEGF8 Missense_Mutation p.P1063L 0.33 deleterious(0.01) benign(0.103) TCGA-WE-AAA3-06 19 4290466 4290466 C A SHD Missense_Mutation p.L287M 0.34 tolerated(1) benign(0.277) TCGA-WE-AAA3-06 19 43680254 43680254 C T PSG5 Silent p.R159R 0.28 TCGA-WE-AAA3-06 19 44679620 44679620 C T ZNF226 Intron 0.23 TCGA-WE-AAA3-06 19 44891841 44891841 G A ZNF285 Missense_Mutation p.S189L 0.35 deleterious(0.04) benign(0.002) TCGA-WE-AAA3-06 19 4538596 4538596 C T LRG1 Missense_Mutation p.G134S 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-WE-AAA3-06 19 45809926 45809926 G A CKM 3'UTR 0.20 TCGA-WE-AAA3-06 19 48305040 48305040 C T TPRX1 Missense_Mutation p.D410N 0.41 tolerated_low_confidence(0.08) benign(0.006) TCGA-WE-AAA3-06 19 48801292 48801292 C T CCDC114 Silent p.P452P 0.24 TCGA-WE-AAA3-06 19 49102444 49102444 C T SULT2B1 Silent p.F293F 0.42 TCGA-WE-AAA3-06 19 49671841 49671841 G A TRPM4 Missense_Mutation p.G215D 0.21 tolerated(1) benign(0.193) TCGA-WE-AAA3-06 19 50461972 50461972 C T SIGLEC11 Missense_Mutation p.E431K 0.31 deleterious(0.05) possibly_damaging(0.663) TCGA-WE-AAA3-06 19 51890482 51890482 C T LIM2 Silent p.K72K 0.25 TCGA-WE-AAA3-06 19 52115432 52115432 C T SIGLEC5 3'UTR 0.31 TCGA-WE-AAA3-06 19 54080196 54080196 G A ZNF331 Missense_Mutation p.E128K 0.33 deleterious(0.03) benign(0.049) TCGA-WE-AAA3-06 19 54081001 54081001 C T ZNF331 Missense_Mutation p.S396L 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-WE-AAA3-06 19 54725017 54725017 C T LILRB3 Missense_Mutation p.G298D 0.71 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA3-06 19 55512320 55512320 G A NLRP2 3'UTR 0.16 TCGA-WE-AAA3-06 19 56243992 56243992 C T NLRP9 Missense_Mutation p.G402E 0.18 deleterious(0) probably_damaging(0.985) TCGA-WE-AAA3-06 19 56370125 56370125 C T NLRP4 Nonsense_Mutation p.Q456* 0.26 TCGA-WE-AAA3-06 19 57328021 57328021 C T PEG3 Missense_Mutation p.E597K 0.25 tolerated(0.19) benign(0.003) TCGA-WE-AAA3-06 19 57335694 57335694 C T PEG3 Silent p.K110K 0.28 TCGA-WE-AAA3-06 19 57642920 57642920 G A USP29 3'UTR 0.26 TCGA-WE-AAA3-06 19 581444 581444 G A BSG Missense_Mutation p.G308S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-WE-AAA3-06 19 8617036 8617036 C T MYO1F Missense_Mutation p.E173K 0.37 deleterious(0.01) possibly_damaging(0.901) TCGA-WE-AAA3-06 19 9050038 9050038 G A MUC16 Silent p.F10531F 0.36 TCGA-WE-AAA3-06 19 9064399 9064399 C T MUC16 Missense_Mutation p.E7683K 0.34 unknown(0) TCGA-WE-AAA3-06 19 9069691 9069691 G A MUC16 Missense_Mutation p.P5919S 0.31 unknown(0) TCGA-WE-AAA3-06 19 9088155 9088155 C T MUC16 Silent p.L1220L 0.32 TCGA-WE-AAA3-06 19 9236988 9236988 C T OR7G3 Silent p.G213G 0.37 TCGA-WE-AAA3-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.44 tolerated(0.06) benign(0.006) TCGA-WE-AAA3-06 1 11907226 11907226 C T NPPA Missense_Mutation p.G132R 0.44 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 1 11918282 11918282 A C NPPB Missense_Mutation p.L126R 0.39 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 1 144952128 144952128 G A PDE4DIP Intron 0.15 TCGA-WE-AAA3-06 1 150307403 150307403 C T PRPF3 Intron 0.56 TCGA-WE-AAA3-06 1 154544157 154544157 C T CHRNB2 Silent p.I286I 0.10 TCGA-WE-AAA3-06 1 155223440 155223440 G A FAM189B Silent p.I199I 0.16 TCGA-WE-AAA3-06 1 156352502 156352502 C T RHBG Intron 0.49 TCGA-WE-AAA3-06 1 156621297 156621297 C T BCAN Silent p.N371N 0.18 TCGA-WE-AAA3-06 1 157522195 157522195 C T FCRL5 5'UTR 0.56 TCGA-WE-AAA3-06 1 158641147 158641147 C T SPTA1 Missense_Mutation p.E529K 0.56 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 1 158736329 158736329 C T OR6N1 Silent p.V48V 0.19 TCGA-WE-AAA3-06 1 159176021 159176021 C T DARC Silent p.F266F 0.21 TCGA-WE-AAA3-06 1 159176022 159176022 C T DARC Silent p.L267L 0.21 TCGA-WE-AAA3-06 1 159558529 159558529 G A APCS 3'UTR 0.12 TCGA-WE-AAA3-06 1 160171243 160171243 C T CASQ1 3'UTR 0.44 TCGA-WE-AAA3-06 1 171510418 171510418 T G PRRC2C Missense_Mutation p.S1269R 0.21 unknown(0) TCGA-WE-AAA3-06 1 175365770 175365770 C T TNR Missense_Mutation p.E384K 0.14 deleterious(0.04) possibly_damaging(0.889) TCGA-WE-AAA3-06 1 179023676 179023676 C T FAM20B Silent p.F159F 0.15 TCGA-WE-AAA3-06 1 182869175 182869175 C T SHCBP1L Missense_Mutation p.M635I 0.12 tolerated_low_confidence(0.33) benign(0.023) TCGA-WE-AAA3-06 1 197896729 197896729 G A LHX9 Missense_Mutation p.E248K 0.15 tolerated(0.08) possibly_damaging(0.521) TCGA-WE-AAA3-06 1 198718576 198718576 G C PTPRC Missense_Mutation p.E990D 0.38 tolerated(0.19) benign(0.308) TCGA-WE-AAA3-06 1 201010646 201010646 G A CACNA1S Missense_Mutation p.P1707L 0.44 deleterious_low_confidence(0.04) benign(0.001) TCGA-WE-AAA3-06 1 201184813 201184813 G A IGFN1 Missense_Mutation p.G3048S 0.18 possibly_damaging(0.71) TCGA-WE-AAA3-06 1 202701005 202701005 T A KDM5B Silent p.S1324S 0.16 TCGA-WE-AAA3-06 1 20442897 20442897 G A PLA2G2D Silent p.I38I 0.45 TCGA-WE-AAA3-06 1 205797689 205797689 C T PM20D1 3'UTR 0.19 TCGA-WE-AAA3-06 1 206784693 206784693 G A EIF2D Missense_Mutation p.P31S 0.10 deleterious(0.01) benign(0.015) TCGA-WE-AAA3-06 1 207648475 207648475 C T CR2 Missense_Mutation p.P877L 0.26 tolerated(0.21) benign(0.087) TCGA-WE-AAA3-06 1 209933707 209933707 G A TRAF3IP3 Missense_Mutation p.R108K 0.74 tolerated(0.56) benign(0.004) TCGA-WE-AAA3-06 1 209933708 209933708 G A TRAF3IP3 Silent p.R108R 0.74 TCGA-WE-AAA3-06 1 209950745 209950745 G A TRAF3IP3 Missense_Mutation p.E368K 0.13 tolerated(0.06) benign(0.057) TCGA-WE-AAA3-06 1 228559577 228559577 C T OBSCN Missense_Mutation p.P7990L 0.16 benign(0.083) TCGA-WE-AAA3-06 1 235715418 235715418 G A GNG4 Silent p.T73T 0.47 TCGA-WE-AAA3-06 1 248436675 248436675 G A OR2T33 Missense_Mutation p.L148F 0.30 tolerated(0.93) benign(0.006) TCGA-WE-AAA3-06 1 2541242 2541242 C T MMEL1 Silent p.P107P 0.51 TCGA-WE-AAA3-06 1 26104622 26104622 C G MAN1C1 Silent p.V428V 0.34 TCGA-WE-AAA3-06 1 29365824 29365824 C T EPB41 Nonsense_Mutation p.R508* 0.48 TCGA-WE-AAA3-06 1 40149782 40149782 A T HPCAL4 Missense_Mutation p.F69I 0.64 deleterious(0) benign(0.202) TCGA-WE-AAA3-06 1 45268955 45268955 C T PLK3 Nonsense_Mutation p.R322* 0.44 TCGA-WE-AAA3-06 1 6313940 6313940 G A GPR153 Silent p.D208D 0.60 TCGA-WE-AAA3-06 1 76354939 76354939 C T MSH4 Missense_Mutation p.S704L 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-WE-AAA3-06 1 78428594 78428594 A G FUBP1 Missense_Mutation p.I402T 0.28 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 20 20180520 20180520 C T C20orf26 Missense_Mutation p.P636S 0.28 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 20 23066201 23066201 G A CD93 Missense_Mutation p.S210F 0.31 deleterious(0) probably_damaging(0.94) TCGA-WE-AAA3-06 20 2635439 2635439 C T NOP56 Silent p.L139L 0.41 TCGA-WE-AAA3-06 20 2775037 2775037 G A CPXM1 Silent p.D668D 0.27 TCGA-WE-AAA3-06 20 30418843 30418843 G A MYLK2 Silent p.V441V 0.22 TCGA-WE-AAA3-06 20 3678587 3678587 G A SIGLEC1 Silent p.S660S 0.46 TCGA-WE-AAA3-06 20 37400294 37400294 C T ACTR5 Silent p.T553T 0.43 TCGA-WE-AAA3-06 20 3838326 3838326 C T MAVS Silent p.T54T 0.38 TCGA-WE-AAA3-06 20 42331477 42331477 G A MYBL2 Silent p.L433L 0.37 TCGA-WE-AAA3-06 20 42694459 42694459 G A TOX2 Silent p.L356L 0.38 TCGA-WE-AAA3-06 20 49626521 49626521 G A KCNG1 Missense_Mutation p.R119C 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 20 6093235 6093235 G A FERMT1 Missense_Mutation p.P141S 0.33 deleterious(0.01) possibly_damaging(0.555) TCGA-WE-AAA3-06 20 60963388 60963388 C - RPS21 Frame_Shift_Del p.R71Dfs*27 0.14 TCGA-WE-AAA3-06 20 62038052 62038052 G A KCNQ2 Missense_Mutation p.S855L 0.22 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 20 9400508 9400508 C T PLCB4 Silent p.F690F 0.26 TCGA-WE-AAA3-06 21 11049582 11049582 C T BAGE2 RNA 0.05 TCGA-WE-AAA3-06 21 15537565 15537565 C T LIPI Missense_Mutation p.E315K 0.25 tolerated(0.76) benign(0.001) TCGA-WE-AAA3-06 21 16338588 16338588 G A NRIP1 Silent p.S642S 0.30 TCGA-WE-AAA3-06 21 33063188 33063188 G A SCAF4 Missense_Mutation p.P603S 0.24 possibly_damaging(0.901) TCGA-WE-AAA3-06 21 41300999 41300999 G A PCP4 Missense_Mutation p.R51K 0.29 deleterious(0) possibly_damaging(0.801) TCGA-WE-AAA3-06 21 41550881 41550881 C T DSCAM Missense_Mutation p.E974K 0.33 tolerated(0.07) benign(0.076) TCGA-WE-AAA3-06 21 45709547 45709547 C T AIRE Silent p.S220S 0.20 TCGA-WE-AAA3-06 22 16449110 16449110 G A OR11H1 Missense_Mutation p.S232F 0.22 deleterious(0) possibly_damaging(0.68) TCGA-WE-AAA3-06 22 17264965 17264965 G A XKR3 Silent p.F308F 0.25 TCGA-WE-AAA3-06 22 19443227 19443227 G A UFD1L Missense_Mutation p.P248L 0.45 tolerated(0.08) benign(0.002) TCGA-WE-AAA3-06 22 21133868 21133868 G A SERPIND1 Missense_Mutation p.D90N 0.20 tolerated(0.11) possibly_damaging(0.55) TCGA-WE-AAA3-06 22 22989341 22989341 C T GGTLC2 Silent p.F98F 0.24 TCGA-WE-AAA3-06 22 23114953 23114953 G A IGLV3-12 Silent p.G75G 0.45 TCGA-WE-AAA3-06 22 23465561 23465561 C T GNAZ Silent p.F337F 0.13 TCGA-WE-AAA3-06 22 26168327 26168327 C T MYO18B Silent p.V573V 0.18 TCGA-WE-AAA3-06 22 26422989 26422989 C T MYO18B Missense_Mutation p.S2350F 0.15 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 22 26688804 26688804 C T SEZ6L Missense_Mutation p.S176F 0.22 deleterious(0.04) benign(0.188) TCGA-WE-AAA3-06 22 26771578 26771578 G A SEZ6L Silent p.G955G 0.26 TCGA-WE-AAA3-06 22 28193400 28193400 G A MN1 Silent p.F1044F 0.25 TCGA-WE-AAA3-06 22 32811963 32811963 C T BPIFC Missense_Mutation p.G447E 0.12 deleterious(0) probably_damaging(0.921) TCGA-WE-AAA3-06 22 38530995 38530995 C T PLA2G6 Silent p.E298E 0.22 TCGA-WE-AAA3-06 22 38823022 38823022 G A KCNJ4 Silent p.C372C 0.21 TCGA-WE-AAA3-06 22 41222449 41222449 G A ST13 3'UTR 0.21 TCGA-WE-AAA3-06 2 10136086 10136086 G A GRHL1 Missense_Mutation p.E527K 0.10 tolerated(0.4) benign(0.235) TCGA-WE-AAA3-06 2 109527318 109527318 G A EDAR Intron 0.49 TCGA-WE-AAA3-06 2 113942598 113942598 C T PSD4 Missense_Mutation p.S374L 0.41 deleterious_low_confidence(0.02) benign(0.034) TCGA-WE-AAA3-06 2 11756795 11756795 A G GREB1 Missense_Mutation p.R1121G 0.42 deleterious(0) possibly_damaging(0.555) TCGA-WE-AAA3-06 2 130898827 130898827 G A CCDC74B Missense_Mutation p.S196L 0.28 tolerated(0.73) benign(0.003) TCGA-WE-AAA3-06 2 136567323 136567323 G T LCT Missense_Mutation p.S865Y 0.19 deleterious(0.05) benign(0.091) TCGA-WE-AAA3-06 2 141458133 141458133 C T LRP1B Missense_Mutation p.G2162E 0.34 probably_damaging(0.931) TCGA-WE-AAA3-06 2 144008140 144008140 G A ARHGAP15 Missense_Mutation p.E149K 0.30 deleterious(0.01) possibly_damaging(0.63) TCGA-WE-AAA3-06 2 152427091 152427091 C T NEB Missense_Mutation p.E5680K 0.33 benign(0.101) TCGA-WE-AAA3-06 2 152497159 152497159 G A NEB Missense_Mutation p.R2799C 0.20 benign(0.015) TCGA-WE-AAA3-06 2 152512831 152512831 T C NEB Missense_Mutation p.T2111A 0.18 probably_damaging(0.964) TCGA-WE-AAA3-06 2 163241197 163241197 C T KCNH7 Splice_Site p.X988_splice 0.17 TCGA-WE-AAA3-06 2 165997477 165997477 G A SCN3A Missense_Mutation p.S568F 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-WE-AAA3-06 2 166903433 166903433 G A SCN1A Silent p.F408F 0.35 TCGA-WE-AAA3-06 2 169791713 169791713 G A ABCB11 Missense_Mutation p.H1013Y 0.22 tolerated(0.09) possibly_damaging(0.864) TCGA-WE-AAA3-06 2 170657537 170657537 G A SSB Splice_Site p.X22_splice 0.10 TCGA-WE-AAA3-06 2 179398102 179398102 C T TTN Missense_Mutation p.E34414K 0.18 TCGA-WE-AAA3-06 2 179446730 179446730 T C TTN Silent p.E22122E 0.15 TCGA-WE-AAA3-06 2 179471781 179471781 C T TTN Missense_Mutation p.E17850K 0.27 TCGA-WE-AAA3-06 2 179473993 179473993 C T TTN Missense_Mutation p.M17348I 0.11 TCGA-WE-AAA3-06 2 179480458 179480458 C T TTN Missense_Mutation p.E16124K 0.18 TCGA-WE-AAA3-06 2 179572450 179572450 C T TTN Missense_Mutation p.G9615E 0.22 TCGA-WE-AAA3-06 2 179642209 179642209 C T TTN Nonsense_Mutation p.W1528* 0.36 TCGA-WE-AAA3-06 2 179664444 179664444 G A TTN Silent p.H228H 0.25 TCGA-WE-AAA3-06 2 182400261 182400261 C T ITGA4 3'UTR 0.17 TCGA-WE-AAA3-06 2 182780914 182780914 C T SSFA2 Silent p.I849I 0.45 TCGA-WE-AAA3-06 2 182786784 182786784 C T SSFA2 Missense_Mutation p.S1107F 0.22 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 2 189899716 189899716 C T COL5A2 Missense_Mutation p.G1427R 0.10 unknown(0) TCGA-WE-AAA3-06 2 189904215 189904215 G A COL5A2 Silent p.I1236I 0.31 TCGA-WE-AAA3-06 2 219563450 219563450 C T STK36 Silent p.T1061T 0.31 TCGA-WE-AAA3-06 2 220088690 220088690 C A ATG9A Silent p.V440V 0.17 TCGA-WE-AAA3-06 2 228155472 228155472 G A COL4A3 Missense_Mutation p.G1027E 0.34 unknown(0) TCGA-WE-AAA3-06 2 228207483 228207483 C T MFF Missense_Mutation p.P181S 0.15 tolerated(0.56) benign(0.017) TCGA-WE-AAA3-06 2 228882710 228882710 C T SPHKAP Missense_Mutation p.G954R 0.37 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 2 231050765 231050765 G A SP110 Silent p.V408V 0.36 TCGA-WE-AAA3-06 2 242181896 242181896 G A HDLBP Silent p.L716L 0.11 TCGA-WE-AAA3-06 2 69092892 69092892 C T BMP10 Silent p.Q382Q 0.35 TCGA-WE-AAA3-06 2 73315664 73315664 G A RAB11FIP5 Missense_Mutation p.S361L 0.27 tolerated(0.14) benign(0.031) TCGA-WE-AAA3-06 2 86371941 86371941 A - IMMT Frame_Shift_Del p.L576* 0.20 TCGA-WE-AAA3-06 2 95815802 95815802 G A ZNF514 Missense_Mutation p.S143F 0.21 tolerated(0.06) benign(0.001) TCGA-WE-AAA3-06 3 108081263 108081263 C T HHLA2 Silent p.L360L 0.32 TCGA-WE-AAA3-06 3 111886123 111886123 C T SLC9C1 Silent p.R1103R 0.29 TCGA-WE-AAA3-06 3 112648082 112648082 T A CD200R1 Missense_Mutation p.T159S 0.35 tolerated(0.19) benign(0.013) TCGA-WE-AAA3-06 3 11300851 11300851 G A HRH1 Missense_Mutation p.G43E 0.29 deleterious(0.02) benign(0.258) TCGA-WE-AAA3-06 3 119134657 119134657 C T ARHGAP31 Missense_Mutation p.S1294L 0.34 tolerated(0.79) benign(0) TCGA-WE-AAA3-06 3 120941903 120941903 G A STXBP5L Missense_Mutation p.R337K 0.36 tolerated(0.21) benign(0.026) TCGA-WE-AAA3-06 3 120952509 120952509 C T STXBP5L Silent p.L386L 0.30 TCGA-WE-AAA3-06 3 121641697 121641697 G A SLC15A2 Missense_Mutation p.E286K 0.16 tolerated(0.07) benign(0.444) TCGA-WE-AAA3-06 3 121712381 121712381 G A ILDR1 Silent p.S405S 0.21 TCGA-WE-AAA3-06 3 124930208 124930208 G A SLC12A8 5'UTR 0.38 TCGA-WE-AAA3-06 3 138195666 138195666 G A ESYT3 Silent p.E877E 0.30 TCGA-WE-AAA3-06 3 15516994 15516994 C T COLQ Missense_Mutation p.G156S 0.29 deleterious(0) unknown(0) TCGA-WE-AAA3-06 3 155241739 155241739 C T PLCH1 Missense_Mutation p.D461N 0.34 deleterious(0) probably_damaging(0.979) TCGA-WE-AAA3-06 3 158787127 158787127 C T IQCJ 5'UTR 0.39 TCGA-WE-AAA3-06 3 170800135 170800135 C T TNIK Missense_Mutation p.R1073Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA3-06 3 172232743 172232743 C T TNFSF10 Missense_Mutation p.E60K 0.33 deleterious(0.03) possibly_damaging(0.834) TCGA-WE-AAA3-06 3 182733119 182733119 C T MCCC1 3'UTR 0.42 TCGA-WE-AAA3-06 3 185393213 185393213 C T IGF2BP2 Silent p.Q314Q 0.35 TCGA-WE-AAA3-06 3 186522461 186522461 G A RFC4 Silent p.P14P 0.30 TCGA-WE-AAA3-06 3 189608587 189608587 G A TP63 Silent p.A554A 0.20 TCGA-WE-AAA3-06 3 189612307 189612307 C T TP63 3'UTR 0.39 TCGA-WE-AAA3-06 3 189700849 189700849 C T LEPREL1 Missense_Mutation p.R437Q 0.33 tolerated(0.5) benign(0.017) TCGA-WE-AAA3-06 3 193023397 193023397 G A ATP13A5 Missense_Mutation p.P877S 0.24 deleterious(0) possibly_damaging(0.611) TCGA-WE-AAA3-06 3 195595285 195595285 G A TNK2 Silent p.P691P 0.18 TCGA-WE-AAA3-06 3 196388083 196388083 C T NRROS Silent p.L523L 0.33 TCGA-WE-AAA3-06 3 24164362 24164362 G A THRB 3'UTR 0.32 TCGA-WE-AAA3-06 3 36570340 36570340 G A STAC Missense_Mutation p.G325R 0.35 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 3 36884116 36884116 C T TRANK1 Nonsense_Mutation p.W1715* 0.26 TCGA-WE-AAA3-06 3 38348771 38348771 G A SLC22A14 Silent p.T181T 0.31 TCGA-WE-AAA3-06 3 38454489 38454489 G A XYLB Silent p.R532R 0.25 TCGA-WE-AAA3-06 3 38739167 38739167 C T SCN10A Nonsense_Mutation p.W1848* 0.42 TCGA-WE-AAA3-06 3 39156168 39156168 C G TTC21A Silent p.L217L 0.31 TCGA-WE-AAA3-06 3 44841831 44841831 G A KIF15 Missense_Mutation p.G375E 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 3 45867793 45867793 G A LZTFL1 3'UTR 0.25 TCGA-WE-AAA3-06 3 46621233 46621233 G A TDGF1 Silent p.K76K 0.26 TCGA-WE-AAA3-06 3 49849391 49849391 A G UBA7 Missense_Mutation p.V284A 0.25 tolerated(0.21) benign(0.003) TCGA-WE-AAA3-06 3 51392331 51392331 C T DOCK3 Missense_Mutation p.R1376C 0.30 deleterious(0) possibly_damaging(0.694) TCGA-WE-AAA3-06 3 51661656 51661656 C T RAD54L2 Missense_Mutation p.S76L 0.24 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-WE-AAA3-06 3 58112407 58112407 T G FLNB Missense_Mutation p.D1380E 0.35 deleterious(0) possibly_damaging(0.665) TCGA-WE-AAA3-06 3 63542379 63542379 C T SYNPR Nonsense_Mutation p.Q124* 0.18 TCGA-WE-AAA3-06 3 68934337 68934337 C T FAM19A4 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.02) benign(0) TCGA-WE-AAA3-06 3 71830647 71830647 C T PROK2 Missense_Mutation p.G65R 0.33 deleterious(0.02) probably_damaging(1) TCGA-WE-AAA3-06 3 77595509 77595509 C T ROBO2 Missense_Mutation p.R335W 0.27 deleterious(0.01) possibly_damaging(0.898) TCGA-WE-AAA3-06 3 87027953 87027953 C T VGLL3 Splice_Site p.X43_splice 0.18 TCGA-WE-AAA3-06 3 89480458 89480458 C T EPHA3 Silent p.F765F 0.29 TCGA-WE-AAA3-06 3 97888088 97888088 T G OR5H15 Missense_Mutation p.I182S 0.21 deleterious(0.01) benign(0.098) TCGA-WE-AAA3-06 3 97888463 97888463 G A OR5H15 Missense_Mutation p.R307K 0.29 tolerated(1) benign(0.003) TCGA-WE-AAA3-06 4 115750954 115750954 C T NDST4 Missense_Mutation p.D831N 0.17 deleterious(0.04) probably_damaging(0.957) TCGA-WE-AAA3-06 4 126237937 126237937 T G FAT4 Missense_Mutation p.L124R 0.25 benign(0.418) TCGA-WE-AAA3-06 4 128685470 128685470 C T SLC25A31 Missense_Mutation p.P145S 0.16 tolerated(0.11) probably_damaging(0.989) TCGA-WE-AAA3-06 4 164272717 164272717 G A NPY5R Missense_Mutation p.G431E 0.28 tolerated(0.06) probably_damaging(0.935) TCGA-WE-AAA3-06 4 1729602 1729602 C T TACC3 Missense_Mutation p.S158F 0.22 deleterious(0.01) possibly_damaging(0.491) TCGA-WE-AAA3-06 4 184930426 184930426 C T STOX2 Silent p.F145F 0.19 TCGA-WE-AAA3-06 4 26661286 26661286 G A TBC1D19 Missense_Mutation p.G183D 0.15 tolerated(0.12) probably_damaging(1) TCGA-WE-AAA3-06 4 46737164 46737164 G A COX7B2 Nonsense_Mutation p.Q16* 0.14 TCGA-WE-AAA3-06 4 47428125 47428125 G A GABRB1 3'UTR 0.28 TCGA-WE-AAA3-06 4 47625734 47625734 C T CORIN Missense_Mutation p.M798I 0.13 tolerated(0.21) benign(0.04) TCGA-WE-AAA3-06 4 5862761 5862761 G A CRMP1 Missense_Mutation p.T216M 0.18 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 4 68964710 68964710 T C TMPRSS11F Missense_Mutation p.R20G 0.15 deleterious(0) benign(0.172) TCGA-WE-AAA3-06 4 70080245 70080245 G A UGT2B11 Missense_Mutation p.P66S 0.17 tolerated(0.29) benign(0.034) TCGA-WE-AAA3-06 4 71509115 71509115 G A ENAM Missense_Mutation p.D658N 0.43 deleterious(0) probably_damaging(0.984) TCGA-WE-AAA3-06 4 7435160 7435160 C A PSAPL1 Missense_Mutation p.A483S 0.40 deleterious(0) benign(0.062) TCGA-WE-AAA3-06 4 88583641 88583641 G A DMP1 Missense_Mutation p.M237I 0.36 tolerated(0.39) benign(0.02) TCGA-WE-AAA3-06 4 90857079 90857079 G A MMRN1 Missense_Mutation p.E750K 0.16 tolerated(0.21) benign(0.037) TCGA-WE-AAA3-06 5 112676408 112676408 C T MCC Silent p.R145R 0.38 TCGA-WE-AAA3-06 5 11411748 11411748 G A CTNND2 Silent p.I113I 0.38 TCGA-WE-AAA3-06 5 127616007 127616007 C T FBN2 Missense_Mutation p.E2339K 0.26 tolerated(0.07) probably_damaging(0.981) TCGA-WE-AAA3-06 5 128956429 128956429 G A ADAMTS19 Missense_Mutation p.E527K 0.14 deleterious(0.04) benign(0.217) TCGA-WE-AAA3-06 5 134870863 134870863 A C NEUROG1 Missense_Mutation p.L173R 0.13 tolerated(0.23) possibly_damaging(0.719) TCGA-WE-AAA3-06 5 135383018 135383018 G A TGFBI Missense_Mutation p.G227E 0.15 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 5 137451359 137451359 G A NME5 3'UTR 0.25 TCGA-WE-AAA3-06 5 137542245 137542245 G A CDC23 Silent p.S121S 0.22 TCGA-WE-AAA3-06 5 13769236 13769236 C T DNAH5 Missense_Mutation p.E3244K 0.18 possibly_damaging(0.621) TCGA-WE-AAA3-06 5 13885224 13885224 C T DNAH5 Missense_Mutation p.E953K 0.38 benign(0.292) TCGA-WE-AAA3-06 5 140208256 140208256 C T PCDHA6 Missense_Mutation p.L194F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-WE-AAA3-06 5 140502104 140502104 C T PCDHB4 Missense_Mutation p.S175F 0.15 tolerated_low_confidence(0.14) benign(0.199) TCGA-WE-AAA3-06 5 149008523 149008523 G A ARHGEF37 Missense_Mutation p.M604I 0.45 tolerated(0.18) benign(0) TCGA-WE-AAA3-06 5 153085364 153085364 A T GRIA1 Missense_Mutation p.K530N 0.17 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 5 156665151 156665151 C T ITK Silent p.S267S 0.09 TCGA-WE-AAA3-06 5 159656586 159656586 G A FABP6 Missense_Mutation p.E57K 0.43 tolerated(0.3) benign(0.315) TCGA-WE-AAA3-06 5 162945270 162945270 C T MAT2B Silent p.T302T 0.39 TCGA-WE-AAA3-06 5 167617478 167617478 C T TENM2 Silent p.F902F 0.33 TCGA-WE-AAA3-06 5 167645224 167645224 A T TENM2 Missense_Mutation p.N1443I 0.29 deleterious(0) possibly_damaging(0.655) TCGA-WE-AAA3-06 5 169116298 169116298 G A DOCK2 Silent p.K268K 0.34 TCGA-WE-AAA3-06 5 174869568 174869568 G A DRD1 Silent p.L179L 0.33 TCGA-WE-AAA3-06 5 180057562 180057562 G A FLT4 Silent p.F131F 0.16 TCGA-WE-AAA3-06 5 21975344 21975344 G A CDH12 Missense_Mutation p.R128C 0.25 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA3-06 5 35774045 35774045 G A SPEF2 Missense_Mutation p.E1334K 0.18 deleterious(0.01) benign(0.154) TCGA-WE-AAA3-06 5 37048646 37048646 A G NIPBL Missense_Mutation p.E2211G 0.12 deleterious(0.03) benign(0.219) TCGA-WE-AAA3-06 5 38924566 38924566 C T OSMR Missense_Mutation p.S638F 0.19 tolerated(0.14) possibly_damaging(0.671) TCGA-WE-AAA3-06 5 64595818 64595818 A T ADAMTS6 Missense_Mutation p.F455Y 0.27 tolerated(0.08) probably_damaging(0.914) TCGA-WE-AAA3-06 5 72857054 72857054 G A ANKRA2 Missense_Mutation p.P117S 0.29 tolerated(0.11) probably_damaging(0.996) TCGA-WE-AAA3-06 5 82815582 82815582 C T VCAN Missense_Mutation p.S486L 0.41 tolerated(0.06) benign(0.097) TCGA-WE-AAA3-06 5 82815902 82815902 C T VCAN Missense_Mutation p.H593Y 0.18 tolerated(0.35) benign(0) TCGA-WE-AAA3-06 5 92929274 92929274 G C NR2F1 Missense_Mutation p.C333S 0.19 tolerated(0.19) benign(0.088) TCGA-WE-AAA3-06 5 92929474 92929474 G A NR2F1 Missense_Mutation p.E400K 0.10 tolerated(0.05) benign(0.211) TCGA-WE-AAA3-06 6 117128321 117128321 G A GPRC6A Missense_Mutation p.P183S 0.47 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA3-06 6 117609906 117609906 C T ROS1 Missense_Mutation p.E2265K 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-WE-AAA3-06 6 118786566 118786566 G C CEP85L 3'UTR 0.42 TCGA-WE-AAA3-06 6 128134527 128134527 G A THEMIS Missense_Mutation p.S420F 0.60 deleterious(0) possibly_damaging(0.807) TCGA-WE-AAA3-06 6 135260492 135260492 C T ALDH8A1 Silent p.A168A 0.61 TCGA-WE-AAA3-06 6 154414481 154414481 G A OPRM1 Intron 0.42 TCGA-WE-AAA3-06 6 159670206 159670206 G A FNDC1 Missense_Mutation p.R1609Q 0.54 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 6 26423355 26423355 C T BTN2A3P RNA 0.21 TCGA-WE-AAA3-06 6 29274931 29274931 C T OR14J1 Silent p.L155L 0.22 TCGA-WE-AAA3-06 6 30682892 30682892 T G MDC1 Missense_Mutation p.S21R 0.17 deleterious(0.03) benign(0.234) TCGA-WE-AAA3-06 6 30682893 30682893 G C MDC1 Silent p.S20S 0.17 TCGA-WE-AAA3-06 6 31080025 31080025 G A C6orf15 Silent p.S37S 0.27 TCGA-WE-AAA3-06 6 31548770 31548770 C T LTB Missense_Mutation p.D151N 0.70 tolerated(0.49) benign(0.115) TCGA-WE-AAA3-06 6 32024617 32024617 C T TNXB Missense_Mutation p.R2630H 0.21 possibly_damaging(0.754) TCGA-WE-AAA3-06 6 34512149 34512149 C T SPDEF Silent p.L28L 0.24 TCGA-WE-AAA3-06 6 36298315 36298315 C T C6orf222 Silent p.T51T 0.30 TCGA-WE-AAA3-06 6 38783426 38783426 G A DNAH8 Silent p.K955K 0.26 TCGA-WE-AAA3-06 6 40400568 40400568 G A LRFN2 Silent p.S95S 0.18 TCGA-WE-AAA3-06 6 43395726 43395726 C T ABCC10 Missense_Mutation p.L4F 0.25 tolerated_low_confidence(0.43) benign(0.004) TCGA-WE-AAA3-06 6 43420776 43420776 G A DLK2 Missense_Mutation p.H80Y 0.23 deleterious(0.02) benign(0.418) TCGA-WE-AAA3-06 6 46832874 46832874 G A GPR116 Missense_Mutation p.S632F 0.17 tolerated(0.06) benign(0.013) TCGA-WE-AAA3-06 6 49696411 49696411 C T CRISP3 3'UTR 0.19 TCGA-WE-AAA3-06 6 54212284 54212284 G A TINAG Missense_Mutation p.D290N 0.24 deleterious(0) probably_damaging(0.936) TCGA-WE-AAA3-06 6 54254639 54254639 G A TINAG Silent p.R449R 0.52 TCGA-WE-AAA3-06 6 70637882 70637882 G A COL19A1 Silent p.R116R 0.41 TCGA-WE-AAA3-06 6 7579868 7579868 G A DSP Missense_Mutation p.E1149K 0.23 probably_damaging(0.991) TCGA-WE-AAA3-06 6 7585638 7585638 G A DSP Missense_Mutation p.E2715K 0.21 probably_damaging(0.959) TCGA-WE-AAA3-06 6 84108228 84108228 G A ME1 Missense_Mutation p.L74F 0.33 tolerated(0.49) benign(0.006) TCGA-WE-AAA3-06 6 90605530 90605530 G A GJA10 Missense_Mutation p.G448E 0.51 tolerated(0.19) benign(0.024) TCGA-WE-AAA3-06 7 100552039 100552039 C T MUC3A Missense_Mutation p.P264S 0.17 tolerated(0.2) benign(0.235) TCGA-WE-AAA3-06 7 100686859 100686859 G A MUC17 Silent p.P4054P 0.30 TCGA-WE-AAA3-06 7 142099570 142099570 C T TRBV7-8 Missense_Mutation p.G78R 0.29 tolerated(0.06) benign(0.208) TCGA-WE-AAA3-06 7 142641419 142641419 T A KEL Missense_Mutation p.E494D 0.33 tolerated(0.17) benign(0.027) TCGA-WE-AAA3-06 7 147914481 147914481 G A CNTNAP2 Missense_Mutation p.D1038N 0.22 tolerated(0.62) benign(0.001) TCGA-WE-AAA3-06 7 151970830 151970830 G C KMT2C Missense_Mutation p.F324L 0.05 benign(0.403) TCGA-WE-AAA3-06 7 36917628 36917628 G A ELMO1 Silent p.S603S 0.33 TCGA-WE-AAA3-06 7 37262240 37262240 C T ELMO1 Missense_Mutation p.A254T 0.24 deleterious(0.02) benign(0.361) TCGA-WE-AAA3-06 7 72159806 72159806 G A MIR4650-2 5'Flank 0.30 TCGA-WE-AAA3-06 7 81579648 81579648 G A CACNA2D1 3'UTR 0.40 TCGA-WE-AAA3-06 7 82764940 82764940 C T PCLO Missense_Mutation p.M642I 0.15 unknown(0) TCGA-WE-AAA3-06 7 86415946 86415946 G A GRM3 Missense_Mutation p.D280N 0.25 tolerated(0.08) possibly_damaging(0.801) TCGA-WE-AAA3-06 7 91753148 91753148 G A CYP51A1 Missense_Mutation p.R264W 0.23 deleterious(0.03) possibly_damaging(0.512) TCGA-WE-AAA3-06 7 92028275 92028275 C T ANKIB1 3'UTR 0.40 TCGA-WE-AAA3-06 7 92760940 92760940 C T SAMD9L Missense_Mutation p.E1449K 0.29 tolerated(0.12) benign(0.16) TCGA-WE-AAA3-06 7 92763064 92763064 G A SAMD9L Missense_Mutation p.H741Y 0.30 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 7 93090136 93090136 G C CALCR Missense_Mutation p.D249E 0.31 deleterious(0.03) possibly_damaging(0.624) TCGA-WE-AAA3-06 7 94993307 94993307 G A PON3 Missense_Mutation p.S188F 0.32 tolerated(0.49) benign(0.001) TCGA-WE-AAA3-06 8 10177448 10177448 C T MSRA Silent p.T164T 0.41 TCGA-WE-AAA3-06 8 109215276 109215276 G A EIF3E Missense_Mutation p.S412F 0.45 tolerated(0.1) benign(0.218) TCGA-WE-AAA3-06 8 110131514 110131514 G A TRHR Missense_Mutation p.E343K 0.20 tolerated(0.25) benign(0.005) TCGA-WE-AAA3-06 8 110397811 110397811 G A PKHD1L1 Missense_Mutation p.G174E 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-WE-AAA3-06 8 113529403 113529403 C T CSMD3 Missense_Mutation p.R1539Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-WE-AAA3-06 8 123965410 123965410 C T ZHX2 Missense_Mutation p.P554S 0.20 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA3-06 8 124992888 124992888 C T FER1L6 Missense_Mutation p.S416F 0.20 deleterious(0) probably_damaging(0.942) TCGA-WE-AAA3-06 8 125072870 125072870 G A FER1L6 Missense_Mutation p.G1023R 0.32 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA3-06 8 125132166 125132166 G A FER1L6 3'UTR 0.29 TCGA-WE-AAA3-06 8 130777930 130777930 C T GSDMC Missense_Mutation p.D172N 0.22 deleterious(0) benign(0.031) TCGA-WE-AAA3-06 8 131896981 131896981 T G ADCY8 Silent p.S646S 0.22 TCGA-WE-AAA3-06 8 144809159 144809159 G A FAM83H Silent p.G824G 0.23 TCGA-WE-AAA3-06 8 144940348 144940348 G A EPPK1 Silent p.P2358P 0.04 TCGA-WE-AAA3-06 8 144943949 144943949 C T EPPK1 Missense_Mutation p.R1158Q 0.25 probably_damaging(0.992) TCGA-WE-AAA3-06 8 145657725 145657725 C T TONSL Silent p.V1226V 0.25 TCGA-WE-AAA3-06 8 15977932 15977932 C T MSR1 Missense_Mutation p.G406E 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 8 16026295 16026295 C T MSR1 Missense_Mutation p.G101E 0.40 tolerated(0.41) benign(0.018) TCGA-WE-AAA3-06 8 24324481 24324481 G A ADAM7 Missense_Mutation p.E187K 0.50 tolerated(0.94) benign(0) TCGA-WE-AAA3-06 8 27294653 27294653 C T PTK2B Silent p.I452I 0.46 TCGA-WE-AAA3-06 8 28196701 28196701 G A PNOC Missense_Mutation p.E91K 0.55 tolerated(0.07) benign(0.113) TCGA-WE-AAA3-06 8 2876014 2876014 C T CSMD1 Missense_Mutation p.E2672K 0.39 probably_damaging(0.996) TCGA-WE-AAA3-06 8 55533670 55533670 C T RP1 Silent p.F48F 0.23 TCGA-WE-AAA3-06 8 55540430 55540430 G A RP1 Missense_Mutation p.D1330N 0.26 tolerated(0.18) benign(0.023) TCGA-WE-AAA3-06 8 56436772 56436772 G A XKR4 Missense_Mutation p.E647K 0.46 deleterious(0) probably_damaging(0.981) TCGA-WE-AAA3-06 8 57354022 57354022 C T PENK Missense_Mutation p.E205K 0.16 deleterious(0.01) benign(0.42) TCGA-WE-AAA3-06 8 72211898 72211898 G A EYA1 Missense_Mutation p.S205F 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-WE-AAA3-06 8 73848695 73848695 C T KCNB2 Missense_Mutation p.P369S 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA3-06 8 73848772 73848772 G A KCNB2 Silent p.G394G 0.22 TCGA-WE-AAA3-06 8 77618363 77618363 A G ZFHX4 Silent p.G680G 0.30 TCGA-WE-AAA3-06 8 92378808 92378808 G A SLC26A7 Missense_Mutation p.E497K 0.20 tolerated(0.76) benign(0.281) TCGA-WE-AAA3-06 8 94792969 94792969 C T TMEM67 Missense_Mutation p.S288L 0.18 tolerated(0.21) benign(0.124) TCGA-WE-AAA3-06 8 95531252 95531253 AG - KIAA1429 Frame_Shift_Del p.L825Yfs*14 0.16 TCGA-WE-AAA3-06 8 97847267 97847267 G A CPQ Missense_Mutation p.R167K 0.27 tolerated(1) benign(0.001) TCGA-WE-AAA3-06 9 107289149 107289149 G A OR13C4 Silent p.L114L 0.47 TCGA-WE-AAA3-06 9 116971715 116971715 C T COL27A1 Intron 0.33 TCGA-WE-AAA3-06 9 120476737 120476737 C T TLR4 Silent p.T777T 0.39 TCGA-WE-AAA3-06 9 121976357 121976357 C T BRINP1 Silent p.G254G 0.28 TCGA-WE-AAA3-06 9 122011371 122011371 G A BRINP1 Silent p.R92R 0.32 TCGA-WE-AAA3-06 9 135554743 135554743 C T GTF3C4 Silent p.F579F 0.37 TCGA-WE-AAA3-06 9 136198698 136198698 G A SURF6 3'UTR 0.42 TCGA-WE-AAA3-06 9 138557558 138557558 C T LCN9 Silent p.Y145Y 0.08 TCGA-WE-AAA3-06 9 139301658 139301658 G A SDCCAG3 Missense_Mutation p.A253V 0.08 tolerated(0.13) benign(0.031) TCGA-WE-AAA3-06 9 21206381 21206381 G A IFNA10 3'UTR 0.38 TCGA-WE-AAA3-06 9 21931093 21931093 C T RP11-145E5.5 Intron 0.41 TCGA-WE-AAA3-06 9 32424652 32424652 C T ACO1 Missense_Mutation p.L393F 0.47 deleterious(0.01) probably_damaging(0.946) TCGA-WE-AAA3-06 9 35045002 35045002 G A C9orf131 Silent p.K792K 0.43 TCGA-WE-AAA3-06 9 37740579 37740579 G A FRMPD1 Nonsense_Mutation p.W685* 0.49 TCGA-WE-AAA3-06 9 87285608 87285608 G A NTRK2 5'UTR 0.34 TCGA-WE-AAA3-06 X 102968620 102968620 G A TMEM31 Silent p.T67T 0.52 TCGA-WE-AAA3-06 X 105278320 105278320 C T SERPINA7 Missense_Mutation p.G317E 0.54 tolerated(1) benign(0.306) TCGA-WE-AAA3-06 X 122538605 122538605 G A GRIA3 Missense_Mutation p.G447E 0.47 deleterious(0) possibly_damaging(0.876) TCGA-WE-AAA3-06 X 128720987 128720987 C T OCRL Silent p.S716S 0.48 TCGA-WE-AAA3-06 X 130415910 130415910 G A IGSF1 Missense_Mutation p.P419S 0.34 deleterious(0.03) benign(0.035) TCGA-WE-AAA3-06 X 140985270 140985270 G T MAGEC3 Missense_Mutation p.G576W 0.45 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA3-06 X 153906498 153906498 C T GAB3 Missense_Mutation p.S574N 0.47 tolerated(1) benign(0.003) TCGA-WE-AAA3-06 X 3240072 3240072 C T MXRA5 Missense_Mutation p.M1218I 0.39 tolerated(0.22) benign(0.001) TCGA-WE-AAA3-06 X 48369840 48369840 C T PORCN Silent p.F98F 0.50 TCGA-WE-AAA3-06 X 49355869 49355869 G A GAGE2A Missense_Mutation p.D51N 0.14 tolerated(0.09) possibly_damaging(0.602) TCGA-WE-AAA3-06 X 54263982 54263982 C T WNK3 Silent p.V1339V 0.55 TCGA-WE-AAA3-06 X 54783975 54783975 G A ITIH6 Silent p.I844I 0.47 TCGA-WE-AAA3-06 X 69719094 69719094 G A DLG3 Missense_Mutation p.E647K 0.48 deleterious(0) benign(0.013) TCGA-WE-AAA3-06 X 71360544 71360544 G A NHSL2 Missense_Mutation p.G1049D 0.51 tolerated(0.48) benign(0.005) TCGA-WE-AAA3-06 X 73044503 73044503 C T XIST RNA 0.42 TCGA-WE-AAA3-06 X 73071842 73071842 G A XIST RNA 0.56 TCGA-WE-AAA3-06 X 78426556 78426556 C T GPR174 Nonsense_Mutation p.R18* 0.43 TCGA-WE-AAA4-06 10 30318159 30318159 T A KIAA1462 Silent p.G306G 0.21 TCGA-WE-AAA4-06 10 30318756 30318756 G A KIAA1462 Silent p.P107P 0.16 TCGA-WE-AAA4-06 10 44052448 44052448 C T ZNF239 Silent p.S360S 0.22 TCGA-WE-AAA4-06 10 46965754 46965754 C T SYT15 Silent p.R261R 0.07 TCGA-WE-AAA4-06 10 61005252 61005252 C T PHYHIPL Silent p.T344T 0.14 TCGA-WE-AAA4-06 10 70507297 70507297 C T CCAR1 Missense_Mutation p.P267L 0.18 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-WE-AAA4-06 10 96454787 96454787 G A CYP2C18 Missense_Mutation p.E199K 0.25 tolerated(0.62) benign(0.008) TCGA-WE-AAA4-06 11 123894626 123894626 G A OR10G9 Missense_Mutation p.D303N 0.06 tolerated(0.61) benign(0.001) TCGA-WE-AAA4-06 11 124134914 124134914 C T OR8G5 Silent p.L64L 0.08 TCGA-WE-AAA4-06 11 18754907 18754907 C T PTPN5 Missense_Mutation p.E365K 0.11 tolerated(0.28) benign(0.035) TCGA-WE-AAA4-06 11 3022339 3022339 C T CARS 3'UTR 0.04 TCGA-WE-AAA4-06 11 31128470 31128470 G A DCDC1 Missense_Mutation p.S542F 0.14 deleterious(0.01) possibly_damaging(0.477) TCGA-WE-AAA4-06 11 33583266 33583266 T C KIAA1549L Missense_Mutation p.Y1058H 0.09 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 11 4471097 4471097 C T OR52K2 Silent p.I176I 0.18 TCGA-WE-AAA4-06 11 4621926 4621926 G A TRIM68 Silent p.I346I 0.17 TCGA-WE-AAA4-06 11 48238910 48238910 C T OR4B1 Silent p.F183F 0.15 TCGA-WE-AAA4-06 11 5068408 5068408 C T OR52J3 Missense_Mutation p.S218L 0.14 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 11 5364200 5364200 G A OR51B5 Silent p.L185L 0.10 TCGA-WE-AAA4-06 11 55735283 55735283 C G OR10AG1 Missense_Mutation p.L219F 0.17 deleterious(0.02) possibly_damaging(0.613) TCGA-WE-AAA4-06 11 55890546 55890546 G A OR8H3 Missense_Mutation p.G233E 0.09 deleterious(0) possibly_damaging(0.729) TCGA-WE-AAA4-06 11 61643906 61643906 G A FADS3 Silent p.F335F 0.25 TCGA-WE-AAA4-06 11 63312253 63312253 C T RARRES3 Silent p.I93I 0.07 TCGA-WE-AAA4-06 11 65305640 65305640 G A SCYL1 Missense_Mutation p.R745H 0.25 deleterious(0.05) benign(0.003) TCGA-WE-AAA4-06 11 66264772 66264772 C T DPP3 Missense_Mutation p.H568Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 11 67560688 67560688 C T FAM86C2P RNA 0.13 TCGA-WE-AAA4-06 11 74716804 74716804 C T NEU3 Missense_Mutation p.S218F 0.17 tolerated(0.71) benign(0.006) TCGA-WE-AAA4-06 11 86749225 86749225 C A TMEM135 Nonsense_Mutation p.Y46* 0.11 TCGA-WE-AAA4-06 11 92616282 92616282 C T FAT3 Silent p.N4220N 0.23 TCGA-WE-AAA4-06 11 93797538 93797538 C T HEPHL1 Nonsense_Mutation p.R224* 0.19 TCGA-WE-AAA4-06 12 102045065 102045065 G A MYBPC1 Missense_Mutation p.E449K 0.10 tolerated(0.06) possibly_damaging(0.734) TCGA-WE-AAA4-06 12 109719222 109719222 G A FOXN4 Silent p.F428F 0.12 TCGA-WE-AAA4-06 12 113875881 113875881 C T SDSL Silent p.V329V 0.20 TCGA-WE-AAA4-06 12 117728219 117728219 C T NOS1 Missense_Mutation p.G289R 0.15 tolerated(0.11) possibly_damaging(0.466) TCGA-WE-AAA4-06 12 11992207 11992207 A G ETV6 Silent p.K99K 0.10 TCGA-WE-AAA4-06 12 122013723 122013723 G A KDM2B Missense_Mutation p.P105S 0.21 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA4-06 12 26732988 26732988 G A ITPR2 Missense_Mutation p.P1494L 0.12 deleterious(0.01) possibly_damaging(0.656) TCGA-WE-AAA4-06 12 47186763 47186763 C T SLC38A4 Missense_Mutation p.G31E 0.15 tolerated(1) benign(0.001) TCGA-WE-AAA4-06 12 48377215 48377215 G A COL2A1 Missense_Mutation p.P668S 0.15 possibly_damaging(0.698) TCGA-WE-AAA4-06 12 57323289 57323289 C T SDR9C7 Silent p.G203G 0.13 TCGA-WE-AAA4-06 12 6091103 6091103 C T VWF Missense_Mutation p.R2379H 0.14 deleterious(0) possibly_damaging(0.84) TCGA-WE-AAA4-06 12 6933691 6933691 G A GPR162 Silent p.R209R 0.16 TCGA-WE-AAA4-06 12 7293970 7293970 C T CLSTN3 Missense_Mutation p.P486S 0.14 tolerated(0.24) benign(0.006) TCGA-WE-AAA4-06 12 78400836 78400836 C T NAV3 Silent p.I506I 0.16 TCGA-WE-AAA4-06 12 85517998 85517998 C T LRRIQ1 Silent p.A1236A 0.14 TCGA-WE-AAA4-06 12 88380174 88380174 C T C12orf50 Silent p.V279V 0.15 TCGA-WE-AAA4-06 12 93131276 93131276 C T PLEKHG7 5'UTR 0.11 TCGA-WE-AAA4-06 13 100807236 100807236 C T PCCA Missense_Mutation p.H102Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-WE-AAA4-06 13 103518073 103518073 C T BIVM-ERCC5 Missense_Mutation p.P1097S 0.46 tolerated_low_confidence(0.57) benign(0) TCGA-WE-AAA4-06 13 25436932 25436932 G A RNF17 Splice_Site p.X1325_splice 0.18 TCGA-WE-AAA4-06 13 36124642 36124642 G A NBEA Missense_Mutation p.G2205E 0.14 deleterious(0) probably_damaging(0.952) TCGA-WE-AAA4-06 13 70293596 70293596 G A KLHL1 Silent p.V640V 0.12 TCGA-WE-AAA4-06 13 73636326 73636326 C T KLF5 Nonsense_Mutation p.Q197* 0.09 TCGA-WE-AAA4-06 14 105412828 105412828 G A AHNAK2 Missense_Mutation p.S2987L 0.17 probably_damaging(0.979) TCGA-WE-AAA4-06 14 105416749 105416749 G A AHNAK2 Missense_Mutation p.S1680L 0.21 benign(0.146) TCGA-WE-AAA4-06 14 20586072 20586072 G A OR4K17 Silent p.K169K 0.22 TCGA-WE-AAA4-06 14 20586318 20586318 G A OR4K17 Silent p.L251L 0.12 TCGA-WE-AAA4-06 14 22675442 22675442 C T TRAV34 Silent p.L5L 0.36 TCGA-WE-AAA4-06 14 23874842 23874842 C T MYH6 Missense_Mutation p.M113I 0.13 tolerated(0.06) benign(0.051) TCGA-WE-AAA4-06 14 24470720 24470720 C T DHRS4L2 Missense_Mutation p.A220V 0.12 tolerated(0.35) benign(0.395) TCGA-WE-AAA4-06 14 24590176 24590176 C T DCAF11 Missense_Mutation p.R408W 0.10 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 14 33147576 33147576 C A AKAP6 Silent p.L930L 0.12 TCGA-WE-AAA4-06 14 38679183 38679183 C T SSTR1 Missense_Mutation p.R197C 0.14 deleterious(0.01) benign(0.397) TCGA-WE-AAA4-06 14 42356124 42356124 G A LRFN5 Missense_Mutation p.R99Q 0.20 tolerated(0.13) possibly_damaging(0.473) TCGA-WE-AAA4-06 14 74970639 74970639 C T LTBP2 Silent p.K1524K 0.25 TCGA-WE-AAA4-06 14 94703973 94703973 G A PPP4R4 Missense_Mutation p.R268Q 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-WE-AAA4-06 14 95088794 95088794 G A SERPINA3 Missense_Mutation p.G345E 0.12 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 14 96730634 96730634 G A BDKRB1 Silent p.E205E 0.24 TCGA-WE-AAA4-06 15 25227043 25227043 G A SNRPN 3'Flank 0.14 TCGA-WE-AAA4-06 15 33023065 33023065 G A GREM1 Silent p.R58R 0.30 TCGA-WE-AAA4-06 15 35166043 35166043 G A AQR Missense_Mutation p.P1195S 0.10 deleterious(0) probably_damaging(0.989) TCGA-WE-AAA4-06 15 43814397 43814397 C T MAP1A Silent p.P242P 0.13 TCGA-WE-AAA4-06 15 50152623 50152623 C A ATP8B4 Missense_Mutation p.R1116L 0.08 tolerated(0.57) benign(0.056) TCGA-WE-AAA4-06 15 74564116 74564116 C T CCDC33 Missense_Mutation p.P207S 0.10 deleterious(0.01) probably_damaging(0.932) TCGA-WE-AAA4-06 15 92988156 92988156 G A ST8SIA2 Missense_Mutation p.R280H 0.06 probably_damaging(0.993) TCGA-WE-AAA4-06 16 2334305 2334305 G A ABCA3 Silent p.V1279V 0.12 TCGA-WE-AAA4-06 16 23706227 23706227 C T ERN2 Missense_Mutation p.G689E 0.09 tolerated(0.3) benign(0.376) TCGA-WE-AAA4-06 16 3139176 3139176 G A ZSCAN10 Silent p.S698S 0.25 TCGA-WE-AAA4-06 16 33647512 33647512 A G RP11-812E19.9 Silent p.L30L 0.12 TCGA-WE-AAA4-06 16 48220958 48220958 A G ABCC11 Missense_Mutation p.Y993H 0.22 tolerated(0.11) possibly_damaging(0.863) TCGA-WE-AAA4-06 16 58701279 58701279 G A SLC38A7 3'UTR 0.14 TCGA-WE-AAA4-06 16 68961960 68961960 C T TANGO6 Missense_Mutation p.L873F 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-WE-AAA4-06 16 72156845 72156845 C T PMFBP1 Silent p.V912V 0.15 TCGA-WE-AAA4-06 17 10302096 10302096 C T MYH8 Missense_Mutation p.E1324K 0.18 deleterious(0.02) probably_damaging(1) TCGA-WE-AAA4-06 17 11835419 11835419 G A DNAH9 Missense_Mutation p.R4065Q 0.13 possibly_damaging(0.737) TCGA-WE-AAA4-06 17 14683332 14683332 G A AC005863.1 RNA 0.14 TCGA-WE-AAA4-06 17 16830246 16830246 C T TBC1D27 RNA 0.19 TCGA-WE-AAA4-06 17 18967296 18967296 G A SNORD3B-2 RNA 0.12 TCGA-WE-AAA4-06 17 36869276 36869276 C T MLLT6 Intron 0.14 TCGA-WE-AAA4-06 17 38183268 38183268 C T MED24 Missense_Mutation p.R517H 0.08 tolerated(0.05) benign(0.051) TCGA-WE-AAA4-06 17 38556548 38556548 C T TOP2A Silent p.K971K 0.13 TCGA-WE-AAA4-06 17 39032652 39032652 G A KRT20 Silent p.V412V 0.17 TCGA-WE-AAA4-06 17 41720925 41720925 G A MEOX1 Silent p.A191A 0.22 TCGA-WE-AAA4-06 17 4534978 4534978 C T ALOX15 Missense_Mutation p.E636K 0.08 tolerated(0.21) benign(0.073) TCGA-WE-AAA4-06 17 58786603 58786603 C T BCAS3 Missense_Mutation p.H80Y 0.29 tolerated(1) benign(0.001) TCGA-WE-AAA4-06 17 74386960 74386960 G A UBE2O 3'UTR 0.20 TCGA-WE-AAA4-06 17 74386961 74386961 G A UBE2O 3'UTR 0.20 TCGA-WE-AAA4-06 17 79171521 79171521 G A AZI1 Silent p.S546S 0.16 TCGA-WE-AAA4-06 17 8018342 8018342 C T ALOXE3 Missense_Mutation p.M288I 0.19 tolerated(0.52) benign(0) TCGA-WE-AAA4-06 18 2892216 2892216 G A EMILIN2 Silent p.R697R 0.18 TCGA-WE-AAA4-06 18 2892217 2892217 G A EMILIN2 Missense_Mutation p.E698K 0.19 tolerated(0.2) benign(0.285) TCGA-WE-AAA4-06 18 29797737 29797737 G A MEP1B Missense_Mutation p.E634K 0.24 tolerated(0.58) benign(0.002) TCGA-WE-AAA4-06 18 52899846 52899846 A G TCF4 Missense_Mutation p.S617P 0.14 tolerated(0.08) possibly_damaging(0.837) TCGA-WE-AAA4-06 19 14521873 14521873 T C DDX39A Missense_Mutation p.N181D 0.22 tolerated(1) benign(0.003) TCGA-WE-AAA4-06 19 15905444 15905444 G A OR10H5 Missense_Mutation p.V196M 0.15 tolerated(0.05) probably_damaging(0.954) TCGA-WE-AAA4-06 19 16688090 16688090 C T MED26 Missense_Mutation p.G184E 0.13 deleterious(0.03) possibly_damaging(0.83) TCGA-WE-AAA4-06 19 17081720 17081720 G A CPAMD8 Missense_Mutation p.P779S 0.12 tolerated(0.76) benign(0.004) TCGA-WE-AAA4-06 19 24010107 24010107 C T RPSAP58 Silent p.I48I 0.14 TCGA-WE-AAA4-06 19 35823807 35823807 G A CD22 Missense_Mutation p.R131Q 0.19 tolerated(0.37) benign(0.048) TCGA-WE-AAA4-06 19 35829160 35829160 C T CD22 Missense_Mutation p.P359S 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-WE-AAA4-06 19 41743948 41743948 C T AXL Missense_Mutation p.R295W 0.16 tolerated(0.17) possibly_damaging(0.773) TCGA-WE-AAA4-06 19 49484840 49484840 G A GYS1 Silent p.T372T 0.12 TCGA-WE-AAA4-06 19 50031878 50031878 G A RCN3 Missense_Mutation p.G50E 0.19 tolerated(0.2) possibly_damaging(0.672) TCGA-WE-AAA4-06 19 50482446 50482446 G A VRK3 Missense_Mutation p.P444S 0.16 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 19 51914604 51914604 C T SIGLEC10 Missense_Mutation p.A615T 0.20 tolerated(0.15) benign(0.058) TCGA-WE-AAA4-06 19 55045206 55045206 A G KIR3DX1 Missense_Mutation p.N109S 0.08 tolerated(0.06) benign(0.004) TCGA-WE-AAA4-06 19 56244813 56244813 C T NLRP9 Missense_Mutation p.M128I 0.22 tolerated(1) benign(0.002) TCGA-WE-AAA4-06 19 56321430 56321430 G A NLRP11 Silent p.Y182Y 0.12 TCGA-WE-AAA4-06 19 58773066 58773066 G C ZNF544 Missense_Mutation p.C365S 0.13 tolerated(0.76) benign(0.015) TCGA-WE-AAA4-06 19 6312165 6312165 C T ACER1 Silent p.G115G 0.11 TCGA-WE-AAA4-06 19 9090869 9090869 C T MUC16 Missense_Mutation p.E316K 0.25 unknown(0) TCGA-WE-AAA4-06 1 101196912 101196912 G A VCAM1 Missense_Mutation p.D455N 0.19 tolerated(0.15) benign(0.002) TCGA-WE-AAA4-06 1 102462356 102462356 T C OLFM3 Missense_Mutation p.N6S 0.10 tolerated_low_confidence(0.64) unknown(0) TCGA-WE-AAA4-06 1 10473292 10473292 A G PGD Silent p.V276V 0.19 TCGA-WE-AAA4-06 1 117311154 117311154 C T CD2 Missense_Mutation p.P269S 0.12 deleterious(0.05) possibly_damaging(0.539) TCGA-WE-AAA4-06 1 13036228 13036228 G A PRAMEF22 Nonsense_Mutation p.W100* 0.14 TCGA-WE-AAA4-06 1 143767455 143767455 C T PPIAL4G Missense_Mutation p.V132M 0.05 tolerated_low_confidence(0.06) benign(0.376) TCGA-WE-AAA4-06 1 143767456 143767456 C A PPIAL4G Missense_Mutation p.K131N 0.05 deleterious_low_confidence(0.04) benign(0.22) TCGA-WE-AAA4-06 1 152329504 152329504 G A FLG2 Missense_Mutation p.S253F 0.09 unknown(0) TCGA-WE-AAA4-06 1 152329646 152329646 C T FLG2 Missense_Mutation p.E206K 0.10 unknown(0) TCGA-WE-AAA4-06 1 152552087 152552087 G A LCE3D 3'UTR 0.22 TCGA-WE-AAA4-06 1 156128510 156128510 G A SEMA4A Missense_Mutation p.E155K 0.22 tolerated(0.37) benign(0.217) TCGA-WE-AAA4-06 1 156265377 156265377 G A C1orf85 Silent p.L20L 0.24 TCGA-WE-AAA4-06 1 158324356 158324356 G A CD1E Missense_Mutation p.G83E 0.20 deleterious(0) probably_damaging(0.989) TCGA-WE-AAA4-06 1 160523163 160523163 C T CD84 Silent p.R255R 0.09 TCGA-WE-AAA4-06 1 16736381 16736381 C T SPATA21 Missense_Mutation p.R101K 0.12 tolerated(0.13) benign(0.059) TCGA-WE-AAA4-06 1 169388387 169388387 C T CCDC181 Missense_Mutation p.R360Q 0.08 tolerated(0.15) benign(0.182) TCGA-WE-AAA4-06 1 175292531 175292531 G A TNR Missense_Mutation p.L1347F 0.23 deleterious(0.04) benign(0.094) TCGA-WE-AAA4-06 1 17557075 17557075 G A PADI1 Missense_Mutation p.M354I 0.35 tolerated(0.39) benign(0.023) TCGA-WE-AAA4-06 1 177250378 177250378 G A BRINP2 Missense_Mutation p.S689N 0.18 deleterious(0) probably_damaging(0.986) TCGA-WE-AAA4-06 1 179304751 179304751 C T SOAT1 Silent p.T96T 0.31 TCGA-WE-AAA4-06 1 197072987 197072987 G A ASPM Silent p.F1798F 0.13 TCGA-WE-AAA4-06 1 200972879 200972879 G A KIF21B Silent p.P349P 0.25 TCGA-WE-AAA4-06 1 202287083 202287083 C T LGR6 Missense_Mutation p.P551L 0.32 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 1 21808131 21808131 T A NBPF3 Nonsense_Mutation p.L492* 0.30 TCGA-WE-AAA4-06 1 22903265 22903265 G A EPHA8 Missense_Mutation p.E239K 0.15 deleterious(0.04) probably_damaging(0.99) TCGA-WE-AAA4-06 1 240071290 240071290 G A CHRM3 Missense_Mutation p.R180Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 1 247978283 247978283 G A OR14A16 Missense_Mutation p.S250F 0.23 tolerated(0.56) benign(0.06) TCGA-WE-AAA4-06 1 248112997 248112997 C T OR2L8 Missense_Mutation p.L280F 0.21 tolerated(0.06) possibly_damaging(0.595) TCGA-WE-AAA4-06 1 248551733 248551733 C T OR2T6 Missense_Mutation p.S275F 0.24 deleterious(0.01) possibly_damaging(0.859) TCGA-WE-AAA4-06 1 35369952 35369952 G A DLGAP3 Missense_Mutation p.P345S 0.28 tolerated(0.27) benign(0.188) TCGA-WE-AAA4-06 1 36757012 36757012 C T THRAP3 Nonsense_Mutation p.R595* 0.10 TCGA-WE-AAA4-06 1 47504382 47504382 G A CYP4X1 Missense_Mutation p.D276N 0.20 deleterious(0.05) benign(0.076) TCGA-WE-AAA4-06 1 50659526 50659526 G A ELAVL4 Silent p.L165L 0.13 TCGA-WE-AAA4-06 1 64643976 64643976 G A ROR1 Missense_Mutation p.G751E 0.18 deleterious(0.02) possibly_damaging(0.889) TCGA-WE-AAA4-06 1 66999955 66999955 G A SGIP1 5'Flank 0.20 TCGA-WE-AAA4-06 1 75055528 75055528 C T C1orf173 Missense_Mutation p.E655K 0.22 deleterious(0.04) possibly_damaging(0.546) TCGA-WE-AAA4-06 1 9078313 9078313 G A SLC2A7 Silent p.F186F 0.16 TCGA-WE-AAA4-06 20 25257334 25257334 C T PYGB Missense_Mutation p.T238I 0.12 tolerated(0.13) possibly_damaging(0.52) TCGA-WE-AAA4-06 20 30732969 30732969 C T TM9SF4 Missense_Mutation p.T243I 0.15 tolerated(0.19) benign(0.058) TCGA-WE-AAA4-06 20 30732970 30732970 C T TM9SF4 Silent p.T243T 0.15 TCGA-WE-AAA4-06 20 30897899 30897899 G A KIF3B Missense_Mutation p.E107K 0.14 deleterious(0) possibly_damaging(0.907) TCGA-WE-AAA4-06 20 31571700 31571700 C T SUN5 Missense_Mutation p.G347E 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 20 37062587 37062587 C T SNORA71D RNA 0.20 TCGA-WE-AAA4-06 20 51870854 51870854 C T TSHZ2 Missense_Mutation p.S286F 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 20 57766800 57766800 G A ZNF831 Silent p.S242S 0.22 TCGA-WE-AAA4-06 20 9351892 9351892 G A PLCB4 Missense_Mutation p.E179K 0.14 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 20 9496992 9496992 C T LAMP5 Silent p.F153F 0.18 TCGA-WE-AAA4-06 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.06 deleterious(0.01) benign(0.021) TCGA-WE-AAA4-06 21 31045478 31045478 A T GRIK1 Missense_Mutation p.I184N 0.17 deleterious(0) probably_damaging(0.971) TCGA-WE-AAA4-06 21 38103428 38103428 C T SIM2 Missense_Mutation p.H276Y 0.18 tolerated(0.05) benign(0.053) TCGA-WE-AAA4-06 21 45152181 45152181 C T PDXK Intron 0.20 TCGA-WE-AAA4-06 21 45717572 45717572 C T AIRE Nonsense_Mutation p.Q534* 0.23 TCGA-WE-AAA4-06 22 21272313 21272313 C T CRKL Nonsense_Mutation p.Q31* 0.23 TCGA-WE-AAA4-06 22 23438029 23438029 C T GNAZ Silent p.I49I 0.21 TCGA-WE-AAA4-06 22 26690383 26690383 G A SEZ6L Missense_Mutation p.E321K 0.18 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA4-06 22 32587043 32587043 C T RFPL2 Missense_Mutation p.G285S 0.16 tolerated(0.18) benign(0.047) TCGA-WE-AAA4-06 22 38884057 38884057 T C DDX17 Missense_Mutation p.H504R 0.18 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA4-06 22 40802179 40802179 G A SGSM3 Silent p.E304E 0.12 TCGA-WE-AAA4-06 22 44892743 44892743 G A LDOC1L Silent p.L232L 0.13 TCGA-WE-AAA4-06 22 50900845 50900845 C T SBF1 Missense_Mutation p.E729K 0.18 deleterious(0.01) benign(0.156) TCGA-WE-AAA4-06 2 108499251 108499251 G A RGPD4 Missense_Mutation p.E1730K 0.06 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-WE-AAA4-06 2 127806168 127806168 G A BIN1 Silent p.N572N 0.12 TCGA-WE-AAA4-06 2 141267576 141267576 G A LRP1B Silent p.A2773A 0.25 TCGA-WE-AAA4-06 2 152394427 152394427 C G NEB Missense_Mutation p.E7021Q 0.13 possibly_damaging(0.896) TCGA-WE-AAA4-06 2 155711477 155711477 G A KCNJ3 Silent p.V386V 0.20 TCGA-WE-AAA4-06 2 159195209 159195209 C T CCDC148 Intron 0.24 TCGA-WE-AAA4-06 2 160803224 160803224 G A PLA2R1 Intron 0.18 TCGA-WE-AAA4-06 2 1652880 1652880 G A PXDN Missense_Mutation p.S891L 0.20 deleterious(0) probably_damaging(0.996) TCGA-WE-AAA4-06 2 165947271 165947271 C T SCN3A Missense_Mutation p.E1798K 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-WE-AAA4-06 2 167313525 167313525 G A SCN7A Missense_Mutation p.S382F 0.17 deleterious(0) possibly_damaging(0.765) TCGA-WE-AAA4-06 2 179615613 179615613 C T TTN Intron 0.11 TCGA-WE-AAA4-06 2 179639160 179639160 T G TTN Missense_Mutation p.E2277D 0.14 TCGA-WE-AAA4-06 2 185801983 185801983 G A ZNF804A Missense_Mutation p.M620I 0.12 tolerated(0.35) possibly_damaging(0.775) TCGA-WE-AAA4-06 2 196578197 196578197 C T SLC39A10 Missense_Mutation p.S539L 0.18 tolerated(0.2) benign(0.243) TCGA-WE-AAA4-06 2 211179859 211179859 G A MYL1 5'UTR 0.17 TCGA-WE-AAA4-06 2 21228367 21228367 G A APOB Silent p.F3791F 0.10 TCGA-WE-AAA4-06 2 218683175 218683175 G A TNS1 Missense_Mutation p.P1190S 0.08 tolerated(0.05) probably_damaging(0.999) TCGA-WE-AAA4-06 2 228882917 228882917 C T SPHKAP Missense_Mutation p.E885K 0.20 tolerated(0.15) possibly_damaging(0.576) TCGA-WE-AAA4-06 2 242793317 242793317 G A PDCD1 Missense_Mutation p.P254S 0.18 tolerated(0.08) benign(0.02) TCGA-WE-AAA4-06 2 28627159 28627159 C T FOSL2 Silent p.A96A 0.19 TCGA-WE-AAA4-06 2 73118481 73118481 C T SPR Silent p.L201L 0.10 TCGA-WE-AAA4-06 2 80782980 80782980 A T CTNNA2 Missense_Mutation p.E568V 0.13 deleterious(0.01) possibly_damaging(0.485) TCGA-WE-AAA4-06 3 123420356 123420356 C T MYLK Silent p.K797K 0.34 TCGA-WE-AAA4-06 3 128344835 128344835 G A RPN1 Missense_Mutation p.P386L 0.13 deleterious(0) probably_damaging(0.982) TCGA-WE-AAA4-06 3 145799644 145799644 G A PLOD2 Silent p.I413I 0.24 TCGA-WE-AAA4-06 3 156710947 156710947 G A RP11-6F2.3 5'Flank 0.29 TCGA-WE-AAA4-06 3 167023707 167023707 G A ZBBX Silent p.I483I 0.22 TCGA-WE-AAA4-06 3 38138074 38138074 G A DLEC1 Missense_Mutation p.S729N 0.33 tolerated(0.87) benign(0.001) TCGA-WE-AAA4-06 3 49770312 49770312 C T IP6K1 Silent p.E176E 0.28 TCGA-WE-AAA4-06 3 98188742 98188742 G A OR5K1 Missense_Mutation p.E108K 0.24 tolerated(0.11) probably_damaging(0.99) TCGA-WE-AAA4-06 4 101108899 101108899 C T DDIT4L Missense_Mutation p.G173R 0.14 deleterious(0) probably_damaging(0.97) TCGA-WE-AAA4-06 4 107248643 107248643 C T AIMP1 Nonsense_Mutation p.R73* 0.13 TCGA-WE-AAA4-06 4 148984408 148984408 C T ARHGAP10 Missense_Mutation p.P713S 0.21 tolerated(0.41) benign(0.001) TCGA-WE-AAA4-06 4 155505303 155505303 C T FGA Missense_Mutation p.M858I 0.13 deleterious(0.02) possibly_damaging(0.835) TCGA-WE-AAA4-06 4 160273906 160273906 G A RAPGEF2 Missense_Mutation p.R1151Q 0.10 tolerated_low_confidence(0.16) probably_damaging(0.98) TCGA-WE-AAA4-06 4 166976382 166976382 G A TLL1 Missense_Mutation p.G560E 0.14 tolerated(0.05) benign(0.442) TCGA-WE-AAA4-06 4 175231154 175231154 A G CEP44 Missense_Mutation p.N278D 0.12 deleterious(0.05) benign(0.125) TCGA-WE-AAA4-06 4 175896983 175896983 C T ADAM29 Missense_Mutation p.H103Y 0.16 deleterious(0.03) benign(0.348) TCGA-WE-AAA4-06 4 177067216 177067216 C A WDR17 Missense_Mutation p.P558T 0.14 tolerated(0.07) possibly_damaging(0.845) TCGA-WE-AAA4-06 4 47538834 47538834 C T ATP10D Silent p.I425I 0.17 TCGA-WE-AAA4-06 4 55981508 55981508 G C KDR Missense_Mutation p.N143K 0.13 tolerated(1) probably_damaging(0.954) TCGA-WE-AAA4-06 4 56236098 56236098 T C SRD5A3 Missense_Mutation p.M266T 0.12 deleterious(0) possibly_damaging(0.568) TCGA-WE-AAA4-06 4 5806511 5806511 C T EVC Missense_Mutation p.S835L 0.19 tolerated(0.25) benign(0.009) TCGA-WE-AAA4-06 4 69536054 69536054 C T UGT2B15 Missense_Mutation p.D95N 0.21 tolerated(1) benign(0.009) TCGA-WE-AAA4-06 4 94006209 94006209 G A GRID2 Missense_Mutation p.G103E 0.12 tolerated(0.07) possibly_damaging(0.811) TCGA-WE-AAA4-06 5 1244799 1244799 C T SLC6A18 Missense_Mutation p.P525S 0.08 deleterious(0.01) probably_damaging(1) TCGA-WE-AAA4-06 5 131295260 131295260 C T ACSL6 Missense_Mutation p.G667E 0.11 deleterious(0) probably_damaging(0.984) TCGA-WE-AAA4-06 5 135188511 135188511 G A SLC25A48 Splice_Site p.X141_splice 0.17 TCGA-WE-AAA4-06 5 137424754 137424754 G A WNT8A Missense_Mutation p.R169K 0.10 deleterious(0) possibly_damaging(0.87) TCGA-WE-AAA4-06 5 140203603 140203603 C T PCDHA5 Missense_Mutation p.S748L 0.12 deleterious_low_confidence(0.01) benign(0.15) TCGA-WE-AAA4-06 5 140432730 140432730 C T PCDHB1 Missense_Mutation p.R559C 0.14 deleterious(0.02) benign(0.003) TCGA-WE-AAA4-06 5 140474734 140474734 G A PCDHB2 Silent p.Q120Q 0.09 TCGA-WE-AAA4-06 5 156766140 156766140 G A CYFIP2 Missense_Mutation p.D795N 0.14 tolerated(0.18) benign(0.048) TCGA-WE-AAA4-06 5 160758036 160758036 C T GABRB2 Missense_Mutation p.G311R 0.10 tolerated(0.08) probably_damaging(0.999) TCGA-WE-AAA4-06 5 171639112 171639112 C T UBTD2 Missense_Mutation p.E143K 0.06 tolerated(0.08) benign(0.021) TCGA-WE-AAA4-06 5 180376246 180376246 A G BTNL8 Silent p.R281R 0.06 TCGA-WE-AAA4-06 5 23526901 23526901 C T PRDM9 Silent p.L568L 0.08 TCGA-WE-AAA4-06 5 41018875 41018875 C T MROH2B Missense_Mutation p.R864Q 0.08 tolerated(0.11) benign(0.167) TCGA-WE-AAA4-06 5 50680391 50680391 C T ISL1 Silent p.S15S 0.12 TCGA-WE-AAA4-06 5 64756095 64756095 T C ADAMTS6 Missense_Mutation p.K178R 0.11 tolerated(0.8) benign(0.077) TCGA-WE-AAA4-06 5 76785295 76785295 A G WDR41 Silent p.L52L 0.08 TCGA-WE-AAA4-06 5 79034949 79034949 G A CMYA5 Missense_Mutation p.G3454E 0.11 benign(0.168) TCGA-WE-AAA4-06 5 80547069 80547069 G A CKMT2 Missense_Mutation p.E40K 0.10 tolerated(0.81) benign(0.002) TCGA-WE-AAA4-06 5 94230507 94230507 T C MCTP1 Silent p.E562E 0.14 TCGA-WE-AAA4-06 6 107006361 107006361 G A AIM1 Missense_Mutation p.E1498K 0.14 deleterious(0) probably_damaging(0.997) TCGA-WE-AAA4-06 6 129762037 129762037 G A LAMA2 Silent p.Q2054Q 0.28 TCGA-WE-AAA4-06 6 132198191 132198191 C T ENPP1 Silent p.L595L 0.11 TCGA-WE-AAA4-06 6 25726745 25726745 C T HIST1H2AA Missense_Mutation p.R4Q 0.22 deleterious_low_confidence(0.02) benign(0.006) TCGA-WE-AAA4-06 6 31711947 31711947 C T MSH5 Intron 0.22 TCGA-WE-AAA4-06 6 38746184 38746184 G A DNAH8 Missense_Mutation p.M444I 0.13 benign(0.058) TCGA-WE-AAA4-06 6 42237098 42237098 C T TRERF1 Missense_Mutation p.M77I 0.11 tolerated_low_confidence(0.35) benign(0.01) TCGA-WE-AAA4-06 6 52101626 52101626 C T IL17F 3'UTR 0.13 TCGA-WE-AAA4-06 6 52101627 52101627 C T IL17F 3'UTR 0.13 TCGA-WE-AAA4-06 6 7585590 7585590 G A DSP Missense_Mutation p.E2699K 0.25 probably_damaging(0.961) TCGA-WE-AAA4-06 6 84025117 84025117 G A ME1 Missense_Mutation p.P206S 0.08 deleterious(0) possibly_damaging(0.873) TCGA-WE-AAA4-06 7 100731864 100731864 C T TRIM56 Missense_Mutation p.A424V 0.13 tolerated(0.18) benign(0.027) TCGA-WE-AAA4-06 7 117431596 117431596 G A CTTNBP2 Missense_Mutation p.L552F 0.15 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 7 129933088 129933088 G A CPA4 Missense_Mutation p.G23E 0.10 deleterious(0) benign(0.423) TCGA-WE-AAA4-06 7 129933089 129933089 G A CPA4 Splice_Site p.X23_splice 0.10 TCGA-WE-AAA4-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.12 deleterious(0) probably_damaging(0.967) TCGA-WE-AAA4-06 7 141736669 141736669 C T MGAM Missense_Mutation p.S708F 0.14 deleterious(0) probably_damaging(0.989) TCGA-WE-AAA4-06 7 142111816 142111816 C T TRBV5-7 Missense_Mutation p.G15E 0.17 deleterious(0.03) benign(0.113) TCGA-WE-AAA4-06 7 142749886 142749886 C T OR6V1 Missense_Mutation p.P150L 0.20 deleterious(0.02) possibly_damaging(0.903) TCGA-WE-AAA4-06 7 143747965 143747965 G A OR2A5 Silent p.L157L 0.15 TCGA-WE-AAA4-06 7 148709373 148709373 G A PDIA4 Silent p.L232L 0.16 TCGA-WE-AAA4-06 7 150554443 150554443 C T AOC1 Silent p.I295I 0.26 TCGA-WE-AAA4-06 7 31855584 31855584 C T PDE1C Silent p.G649G 0.12 TCGA-WE-AAA4-06 7 33061712 33061712 C T NT5C3A Splice_Site p.X108_splice 0.20 TCGA-WE-AAA4-06 7 38289005 38289005 G A TRGC2 Missense_Mutation p.S57F 0.19 deleterious(0) probably_damaging(0.998) TCGA-WE-AAA4-06 7 45688334 45688334 G A ADCY1 Silent p.Q362Q 0.20 TCGA-WE-AAA4-06 7 550582 550582 G A PDGFA Missense_Mutation p.P106L 0.14 deleterious(0) probably_damaging(0.995) TCGA-WE-AAA4-06 7 55227923 55227923 T C EGFR Missense_Mutation p.S464P 0.12 tolerated(0.2) possibly_damaging(0.547) TCGA-WE-AAA4-06 7 89856755 89856755 C T STEAP2 Silent p.L321L 0.14 TCGA-WE-AAA4-06 7 89861903 89861903 C T STEAP2 Missense_Mutation p.P480S 0.16 tolerated(0.15) benign(0.001) TCGA-WE-AAA4-06 8 100403841 100403841 G A VPS13B Silent p.E997E 0.20 TCGA-WE-AAA4-06 8 101271246 101271246 C T RNF19A Silent p.K685K 0.18 TCGA-WE-AAA4-06 8 11629074 11629074 C T NEIL2 Silent p.L40L 0.18 TCGA-WE-AAA4-06 8 141712737 141712737 G A PTK2 Missense_Mutation p.L767F 0.11 tolerated(0.19) benign(0.119) TCGA-WE-AAA4-06 8 146017259 146017259 T G RPL8 Missense_Mutation p.K60T 0.08 tolerated(0.08) benign(0.274) TCGA-WE-AAA4-06 8 22995336 22995336 G A TNFRSF10D 3'UTR 0.11 TCGA-WE-AAA4-06 8 42585787 42585787 C T CHRNB3 Silent p.I100I 0.18 TCGA-WE-AAA4-06 8 57354485 57354485 C T PENK Missense_Mutation p.M50I 0.15 deleterious(0.01) benign(0.016) TCGA-WE-AAA4-06 8 66989064 66989064 G A DNAJC5B Missense_Mutation p.E97K 0.11 deleterious(0.02) possibly_damaging(0.67) TCGA-WE-AAA4-06 8 8749166 8749166 G A MFHAS1 Missense_Mutation p.S468F 0.22 deleterious(0.04) benign(0.202) TCGA-WE-AAA4-06 8 99116755 99116755 G A HRSP12 Missense_Mutation p.P105S 0.19 deleterious(0) probably_damaging(0.999) TCGA-WE-AAA4-06 9 114456077 114456077 A G C9orf84 Splice_Site p.X1091_splice 0.17 TCGA-WE-AAA4-06 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.23 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 9 32633128 32633128 C T TAF1L Missense_Mutation p.R817K 0.18 tolerated(0.15) benign(0.016) TCGA-WE-AAA4-06 9 32633129 32633129 T A TAF1L Missense_Mutation p.R817W 0.17 deleterious(0) possibly_damaging(0.762) TCGA-WE-AAA4-06 9 36211722 36211722 G A CLTA Missense_Mutation p.R233H 0.20 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 X 100395667 100395667 C T CENPI Nonsense_Mutation p.Q495* 0.18 TCGA-WE-AAA4-06 X 100911406 100911406 T G ARMCX2 Missense_Mutation p.K390T 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-WE-AAA4-06 X 100912207 100912207 A G ARMCX2 Missense_Mutation p.V123A 0.15 tolerated_low_confidence(0.16) benign(0.001) TCGA-WE-AAA4-06 X 105278230 105278230 G A SERPINA7 Missense_Mutation p.S347F 0.18 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 X 115577930 115577930 C A SLC6A14 Missense_Mutation p.F271L 0.15 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 X 117526665 117526665 G A WDR44 Missense_Mutation p.G86E 0.23 tolerated_low_confidence(0.41) benign(0.001) TCGA-WE-AAA4-06 X 117733126 117733126 C T DOCK11 Missense_Mutation p.H833Y 0.20 tolerated(0.67) benign(0.036) TCGA-WE-AAA4-06 X 117875073 117875073 A G IL13RA1 Missense_Mutation p.N61S 0.21 tolerated(0.34) benign(0.029) TCGA-WE-AAA4-06 X 135431714 135431714 G A GPR112 Missense_Mutation p.G1950E 0.18 tolerated(0.08) benign(0.115) TCGA-WE-AAA4-06 X 139038017 139038017 T C CXorf66 3'UTR 0.10 TCGA-WE-AAA4-06 X 152482913 152482913 G A MAGEA1 Missense_Mutation p.S33F 0.19 tolerated(0.14) benign(0.119) TCGA-WE-AAA4-06 X 153042735 153042735 C A PLXNB3 Missense_Mutation p.P1690Q 0.29 deleterious(0.04) possibly_damaging(0.805) TCGA-WE-AAA4-06 X 16142360 16142360 C T GRPR Missense_Mutation p.P95L 0.24 deleterious(0) probably_damaging(1) TCGA-WE-AAA4-06 X 17819933 17819933 C T RAI2 Silent p.Q66Q 0.19 TCGA-WE-AAA4-06 X 26212411 26212411 G A MAGEB6 Missense_Mutation p.G150R 0.21 tolerated(1) benign(0.026) TCGA-WE-AAA4-06 X 2936589 2936589 C T ARSH Missense_Mutation p.P260L 0.14 deleterious(0) possibly_damaging(0.886) TCGA-WE-AAA4-06 X 46884136 46884136 G A JADE3 Missense_Mutation p.E99K 0.17 deleterious(0.04) possibly_damaging(0.582) TCGA-WE-AAA4-06 X 73524159 73524159 C T ZCCHC13 Missense_Mutation p.P20S 0.16 tolerated(0.05) benign(0.196) TCGA-WE-AAA4-06 X 75650170 75650170 G A MAGEE1 Missense_Mutation p.R616K 0.28 tolerated(0.19) benign(0.291) TCGA-WE-AAA4-06 X 83319365 83319365 G A RPS6KA6 Nonsense_Mutation p.Q720* 0.14 TCGA-WE-AAA4-06 X 84349235 84349235 C T SATL1 Missense_Mutation p.G592D 0.15 tolerated(0.24) benign(0.287) TCGA-WE-AAA4-06 X 84526098 84526098 C T ZNF711 Missense_Mutation p.P517L 0.14 tolerated(0.24) probably_damaging(1) TCGA-XV-A9VZ-01 11 533552 533552 C G HRAS Missense_Mutation p.K117N 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-XV-A9VZ-01 11 62446066 62446066 C A UBXN1 Nonsense_Mutation p.E41* 0.08 TCGA-XV-A9VZ-01 11 64111778 64111778 C T CCDC88B Missense_Mutation p.P589S 0.12 tolerated_low_confidence(0.54) benign(0.005) TCGA-XV-A9VZ-01 12 6692199 6692199 A T CHD4 Missense_Mutation p.S1381T 0.06 tolerated(0.38) benign(0.099) TCGA-XV-A9VZ-01 14 55818846 55818846 C T FBXO34 Missense_Mutation p.H580Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-XV-A9VZ-01 15 92706053 92706053 C T SLCO3A1 Silent p.F607F 0.13 TCGA-XV-A9VZ-01 16 89789758 89789758 T - ZNF276 Frame_Shift_Del p.Q217Rfs*136 0.27 TCGA-XV-A9VZ-01 17 34072258 34072258 G A GAS2L2 Missense_Mutation p.A753V 0.08 tolerated(0.28) benign(0.006) TCGA-XV-A9VZ-01 18 31523045 31523045 C T NOL4 Missense_Mutation p.R509H 0.23 deleterious(0) probably_damaging(0.999) TCGA-XV-A9VZ-01 18 43703290 43703290 A T HAUS1 Missense_Mutation p.D209V 0.34 deleterious(0.02) possibly_damaging(0.628) TCGA-XV-A9VZ-01 19 39897516 39897516 C T ZFP36 5'UTR 0.32 TCGA-XV-A9VZ-01 1 115275374 115275374 C G CSDE1 Missense_Mutation p.D347H 0.05 deleterious(0) probably_damaging(0.919) TCGA-XV-A9VZ-01 20 37117112 37117112 C T RALGAPB Nonsense_Mutation p.Q13* 0.11 TCGA-XV-A9VZ-01 20 37117148 37117148 T C RALGAPB Missense_Mutation p.Y25H 0.12 deleterious(0) probably_damaging(0.977) TCGA-XV-A9VZ-01 22 29750804 29750804 G C AP1B1 Missense_Mutation p.S258C 0.38 deleterious(0) probably_damaging(0.996) TCGA-XV-A9VZ-01 22 31289135 31289135 G A OSBP2 Silent p.A632A 0.29 TCGA-XV-A9VZ-01 22 36680157 36680157 G A MYH9 Missense_Mutation p.S1916F 0.14 possibly_damaging(0.451) TCGA-XV-A9VZ-01 3 196530015 196530015 A G PAK2 Missense_Mutation p.Y139C 0.60 deleterious(0.01) probably_damaging(0.982) TCGA-XV-A9VZ-01 X 150869027 150869027 C G PRRG3 Missense_Mutation p.P73R 0.37 tolerated(0.58) probably_damaging(0.937) TCGA-XV-A9W2-01 10 1405759 1405759 C T ADARB2 Missense_Mutation p.A181T 0.19 deleterious(0) probably_damaging(0.999) TCGA-XV-A9W2-01 10 95162003 95162003 C T MYOF Missense_Mutation p.G326R 0.13 deleterious(0) probably_damaging(1) TCGA-XV-A9W2-01 11 5373433 5373433 G T OR51B6 Missense_Mutation p.R232S 0.23 deleterious(0.04) possibly_damaging(0.794) TCGA-XV-A9W2-01 11 68840132 68840132 C T TPCN2 Nonsense_Mutation p.Q367* 0.13 TCGA-XV-A9W2-01 11 8111748 8111748 C T TUB Missense_Mutation p.L130F 0.22 tolerated(0.14) probably_damaging(0.919) TCGA-XV-A9W2-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.19 deleterious(0.04) possibly_damaging(0.506) TCGA-XV-A9W2-01 12 55421063 55421063 G T NEUROD4 Missense_Mutation p.M280I 0.26 tolerated(0.42) benign(0.001) TCGA-XV-A9W2-01 12 55421064 55421064 C T NEUROD4 Missense_Mutation p.P281S 0.26 tolerated(0.47) benign(0.002) TCGA-XV-A9W2-01 14 100119178 100119178 C T HHIPL1 Silent p.D291D 0.55 TCGA-XV-A9W2-01 15 20170023 20170023 G A IGHV1OR15-9 Silent p.F83F 0.21 TCGA-XV-A9W2-01 15 20662855 20662855 C T HERC2P3 RNA 0.06 TCGA-XV-A9W2-01 15 49917424 49917424 G A DTWD1 Silent p.V20V 0.07 TCGA-XV-A9W2-01 16 216634 216634 C G HBM Missense_Mutation p.T118S 0.31 tolerated(0.17) benign(0.03) TCGA-XV-A9W2-01 16 24578672 24578672 C A RBBP6 Missense_Mutation p.P600T 0.33 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-XV-A9W2-01 17 29663933 29663933 G C NF1 Splice_Site p.X2143_splice 0.48 TCGA-XV-A9W2-01 17 35936444 35936444 A G SYNRG Missense_Mutation p.V299A 0.40 deleterious(0.02) probably_damaging(0.985) TCGA-XV-A9W2-01 17 7287927 7287927 C T TNK1 Missense_Mutation p.L331F 0.38 deleterious(0.04) probably_damaging(1) TCGA-XV-A9W2-01 17 7752987 7752987 G A KDM6B Silent p.R1127R 0.12 TCGA-XV-A9W2-01 18 56203680 56203680 C T ALPK2 Missense_Mutation p.E1247K 0.33 deleterious(0.01) probably_damaging(0.929) TCGA-XV-A9W2-01 18 63477053 63477053 G C CDH7 Missense_Mutation p.K108N 0.24 deleterious(0) probably_damaging(0.952) TCGA-XV-A9W2-01 19 51848525 51848525 G A ETFB Silent p.G327G 0.26 TCGA-XV-A9W2-01 19 54613454 54613454 C G TFPT Silent p.R111R 0.20 TCGA-XV-A9W2-01 19 54617981 54617981 C T TFPT Silent p.L41L 0.27 TCGA-XV-A9W2-01 19 54618646 54618646 C A TFPT Nonsense_Mutation p.E2* 0.23 TCGA-XV-A9W2-01 19 57802835 57802835 C T ZNF460 Missense_Mutation p.A309V 0.29 tolerated(0.1) benign(0.045) TCGA-XV-A9W2-01 19 58718312 58718312 G A ZNF274 Missense_Mutation p.R161H 0.25 tolerated(0.42) benign(0.008) TCGA-XV-A9W2-01 19 7569196 7569196 G A C19orf45 Splice_Site p.X228_splice 0.29 TCGA-XV-A9W2-01 1 3648026 3648027 - T TP73 Frame_Shift_Ins p.L497Ffs*30 0.24 TCGA-XV-A9W2-01 1 47571861 47571861 G A CYP4Z1 Missense_Mutation p.A377T 0.23 deleterious(0.01) benign(0.017) TCGA-XV-A9W2-01 20 62326132 62326132 C G RTEL1 Missense_Mutation p.P1074A 0.43 tolerated_low_confidence(0.2) benign(0.007) TCGA-XV-A9W2-01 22 21380594 21380594 C G P2RX6 Missense_Mutation p.F368L 0.21 tolerated(0.09) benign(0.196) TCGA-XV-A9W2-01 22 23237922 23237922 C A IGLL5 3'UTR 0.56 TCGA-XV-A9W2-01 22 26736558 26736558 C T SEZ6L Silent p.L724L 0.24 TCGA-XV-A9W2-01 22 26736561 26736561 C T SEZ6L Silent p.I725I 0.23 TCGA-XV-A9W2-01 22 26736585 26736585 C T SEZ6L Silent p.I733I 0.25 TCGA-XV-A9W2-01 22 26895418 26895418 G A TFIP11 Silent p.L327L 0.52 TCGA-XV-A9W2-01 22 41605618 41605618 G A L3MBTL2 Intron 0.17 TCGA-XV-A9W2-01 2 101582222 101582222 C A NPAS2 Missense_Mutation p.Q301K 0.30 tolerated(0.2) benign(0.411) TCGA-XV-A9W2-01 2 101622343 101622343 G A RPL31 Intron 0.25 TCGA-XV-A9W2-01 2 127453525 127453525 T G GYPC Missense_Mutation p.V65G 0.33 deleterious(0) probably_damaging(0.917) TCGA-XV-A9W2-01 2 141143471 141143471 C G LRP1B Missense_Mutation p.E3508Q 0.23 possibly_damaging(0.728) TCGA-XV-A9W2-01 2 166027029 166027029 T C SCN3A Silent p.A98A 0.30 TCGA-XV-A9W2-01 4 183601790 183601790 G C TENM3 Silent p.P578P 0.20 TCGA-XV-A9W2-01 5 140209384 140209384 G C PCDHA6 Missense_Mutation p.V570L 0.26 tolerated_low_confidence(0.11) benign(0.011) TCGA-XV-A9W2-01 6 122734703 122734703 C T HSF2 Missense_Mutation p.R122C 0.29 tolerated(0.14) benign(0.021) TCGA-XV-A9W2-01 6 137815326 137815326 G A OLIG3 5'UTR 0.31 TCGA-XV-A9W2-01 6 4047469 4047469 C T PRPF4B Missense_Mutation p.A641V 0.18 deleterious(0) unknown(0) TCGA-XV-A9W2-01 6 83848539 83848539 A G DOPEY1 Missense_Mutation p.E1593G 0.29 deleterious(0) probably_damaging(0.999) TCGA-XV-A9W2-01 6 90503623 90503623 G A MDN1 Missense_Mutation p.A238V 0.06 benign(0.038) TCGA-XV-A9W2-01 7 50605678 50605678 C G DDC Splice_Site p.X106_splice 0.09 TCGA-XV-A9W2-01 8 126369986 126369986 G A NSMCE2 Silent p.V184V 0.25 TCGA-XV-A9W2-01 8 143694629 143694629 C T ARC Missense_Mutation p.R335H 0.43 tolerated(0.05) benign(0.007) TCGA-XV-A9W2-01 8 40011347 40011347 G A C8orf4 Missense_Mutation p.R99Q 0.25 tolerated_low_confidence(0.3) benign(0.084) TCGA-XV-A9W2-01 8 62212767 62212767 C A CLVS1 Silent p.P127P 0.42 TCGA-XV-A9W2-01 9 116823205 116823205 C T AMBP Missense_Mutation p.G343S 0.21 deleterious(0.02) possibly_damaging(0.798) TCGA-XV-A9W2-01 9 132584992 132584992 T A TOR1A Silent p.T104T 0.20 TCGA-XV-A9W2-01 9 19346411 19346411 A T DENND4C Missense_Mutation p.N1166I 0.50 tolerated(0.19) benign(0.023) TCGA-XV-A9W5-01 10 103345175 103345175 G A POLL Silent p.T157T 0.50 TCGA-XV-A9W5-01 10 15120735 15120735 C T ACBD7 Missense_Mutation p.D50N 0.15 deleterious(0.03) benign(0.443) TCGA-XV-A9W5-01 10 73046583 73046583 C T UNC5B Silent p.I230I 0.50 TCGA-XV-A9W5-01 10 89690833 89690834 AT - PTEN Frame_Shift_Del p.K80Nfs*2 0.41 TCGA-XV-A9W5-01 11 103907590 103907590 G A DDI1 Missense_Mutation p.E14K 0.45 deleterious(0.01) possibly_damaging(0.85) TCGA-XV-A9W5-01 11 48238570 48238570 G A OR4B1 Missense_Mutation p.S70N 0.32 deleterious(0.01) benign(0.003) TCGA-XV-A9W5-01 11 5411240 5411240 C T OR51M1 Silent p.I204I 0.35 TCGA-XV-A9W5-01 11 55607085 55607085 G C OR5D16 Missense_Mutation p.L286F 0.40 deleterious(0) benign(0.028) TCGA-XV-A9W5-01 11 60557856 60557856 C T MS4A10 Silent p.L16L 0.34 TCGA-XV-A9W5-01 11 62373203 62373203 G T EML3 Missense_Mutation p.Q609K 0.47 tolerated(1) benign(0.2) TCGA-XV-A9W5-01 11 7722956 7722956 G T OVCH2 Missense_Mutation p.A209E 0.41 tolerated(0.59) benign(0.007) TCGA-XV-A9W5-01 11 78412748 78412748 C A TENM4 Missense_Mutation p.G1637V 0.19 deleterious(0.04) benign(0.266) TCGA-XV-A9W5-01 11 78413118 78413118 C G TENM4 Missense_Mutation p.D1514H 0.15 deleterious(0) possibly_damaging(0.885) TCGA-XV-A9W5-01 12 106827535 106827535 G C POLR3B Missense_Mutation p.V556L 0.25 tolerated(0.28) benign(0.007) TCGA-XV-A9W5-01 12 108685696 108685696 G T CMKLR1 Silent p.P348P 0.40 TCGA-XV-A9W5-01 12 118575944 118575944 C T PEBP1 Missense_Mutation p.P79L 0.28 deleterious(0.02) possibly_damaging(0.734) TCGA-XV-A9W5-01 12 122395087 122395087 C T WDR66 Missense_Mutation p.S548F 0.31 deleterious(0) probably_damaging(0.999) TCGA-XV-A9W5-01 12 124817761 124817761 G A NCOR2 Missense_Mutation p.P2224S 0.33 probably_damaging(1) TCGA-XV-A9W5-01 12 124817762 124817762 G A NCOR2 Silent p.S2223S 0.37 TCGA-XV-A9W5-01 12 132471241 132471241 C T EP400 Silent p.S704S 0.32 TCGA-XV-A9W5-01 12 21036459 21036459 C T SLCO1B3 Silent p.F535F 0.28 TCGA-XV-A9W5-01 12 2778099 2778099 C T CACNA1C Missense_Mutation p.R1590C 0.29 deleterious(0) probably_damaging(1) TCGA-XV-A9W5-01 12 40265673 40265673 G A SLC2A13 Silent p.F375F 0.19 TCGA-XV-A9W5-01 12 419031 419031 C T KDM5A Missense_Mutation p.D1106N 0.37 tolerated(0.16) benign(0.032) TCGA-XV-A9W5-01 12 419032 419032 C T KDM5A Silent p.L1105L 0.33 TCGA-XV-A9W5-01 12 58126729 58126729 C T AGAP2 Missense_Mutation p.G528E 0.33 tolerated(0.61) benign(0.106) TCGA-XV-A9W5-01 12 65449810 65449810 C T WIF1 Splice_Site p.X308_splice 0.44 TCGA-XV-A9W5-01 12 7635262 7635262 C T CD163 Missense_Mutation p.R1075Q 0.31 tolerated(0.61) benign(0.007) TCGA-XV-A9W5-01 12 7980172 7980172 G A SLC2A14 Silent p.L284L 0.38 TCGA-XV-A9W5-01 13 38357147 38357147 G A TRPC4 Silent p.V108V 0.40 TCGA-XV-A9W5-01 13 46357878 46357878 G A SIAH3 Silent p.L150L 0.37 TCGA-XV-A9W5-01 14 22237224 22237224 C T TRAV6 Silent p.L101L 0.32 TCGA-XV-A9W5-01 14 22471674 22471674 C T TRAV18 Missense_Mutation p.P33S 0.24 tolerated(1) benign(0.002) TCGA-XV-A9W5-01 14 42373405 42373405 G A LRFN5 3'UTR 0.17 TCGA-XV-A9W5-01 14 52508974 52508974 G A NID2 Silent p.I558I 0.45 TCGA-XV-A9W5-01 14 54416804 54416804 C T BMP4 Silent p.K391K 0.44 TCGA-XV-A9W5-01 14 65240133 65240133 G A SPTB Silent p.I1661I 0.30 TCGA-XV-A9W5-01 14 79432447 79432447 C T NRXN3 Silent p.S452S 0.36 TCGA-XV-A9W5-01 16 14988878 14988878 C T NOMO1 Silent p.I1156I 0.29 TCGA-XV-A9W5-01 16 19020617 19020617 G A TMC7 Missense_Mutation p.G64E 0.19 tolerated(0.2) benign(0.013) TCGA-XV-A9W5-01 16 19278407 19278407 G T SYT17 3'UTR 0.23 TCGA-XV-A9W5-01 16 31151614 31151614 C T PRSS36 Splice_Site p.X763_splice 0.14 TCGA-XV-A9W5-01 16 333304 333304 G C PDIA2 Missense_Mutation p.L45F 0.52 deleterious(0) probably_damaging(0.997) TCGA-XV-A9W5-01 16 5040850 5040850 C T SEC14L5 Missense_Mutation p.A143V 0.69 tolerated(0.1) possibly_damaging(0.595) TCGA-XV-A9W5-01 16 56686997 56686997 C T MT1B 3'UTR 0.37 TCGA-XV-A9W5-01 17 21318792 21318792 C T KCNJ12 Silent p.F46F 0.12 TCGA-XV-A9W5-01 17 39505606 39505606 G A KRT33A Silent p.F141F 0.30 TCGA-XV-A9W5-01 17 39535968 39535968 G A KRT34 Missense_Mutation p.R244C 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-XV-A9W5-01 17 56423506 56423506 G A SUPT4H1 3'UTR 0.35 TCGA-XV-A9W5-01 18 12963289 12963289 T C SEH1L Missense_Mutation p.V147A 0.43 tolerated(0.05) benign(0.379) TCGA-XV-A9W5-01 18 3089218 3089218 A T MYOM1 Nonsense_Mutation p.L1364* 0.12 TCGA-XV-A9W5-01 18 56202535 56202535 C T ALPK2 Silent p.E1628E 0.29 TCGA-XV-A9W5-01 19 15733921 15733921 C A CYP4F8 RNA 0.29 TCGA-XV-A9W5-01 19 15734040 15734040 G T CYP4F8 RNA 0.39 TCGA-XV-A9W5-01 19 16918944 16918944 C A NWD1 Nonsense_Mutation p.Y1428* 0.28 TCGA-XV-A9W5-01 19 17660341 17660341 G A FAM129C Intron 0.50 TCGA-XV-A9W5-01 19 30503414 30503414 T C URI1 Silent p.L467L 0.44 TCGA-XV-A9W5-01 19 37643575 37643575 G A ZNF585A Missense_Mutation p.S354L 0.27 deleterious(0.03) possibly_damaging(0.505) TCGA-XV-A9W5-01 19 3831687 3831687 G A ZFR2 Missense_Mutation p.S190F 0.42 deleterious(0) benign(0.086) TCGA-XV-A9W5-01 19 38900705 38900705 G A RASGRP4 Missense_Mutation p.T666I 0.31 tolerated_low_confidence(0.08) benign(0.002) TCGA-XV-A9W5-01 19 41077994 41077994 G A SPTBN4 Silent p.P2463P 0.27 TCGA-XV-A9W5-01 19 9074565 9074565 G A MUC16 Missense_Mutation p.S4294F 0.29 unknown(0) TCGA-XV-A9W5-01 1 1119445 1119445 G A TTLL10 Missense_Mutation p.D412N 0.41 tolerated(0.12) probably_damaging(0.954) TCGA-XV-A9W5-01 1 119927640 119927640 G A HAO2 Silent p.R175R 0.33 TCGA-XV-A9W5-01 1 158614069 158614069 C T SPTA1 Missense_Mutation p.D1438N 0.31 tolerated(0.06) probably_damaging(0.92) TCGA-XV-A9W5-01 1 196887393 196887393 G A CFHR4 Missense_Mutation p.G531R 0.30 tolerated(0.31) possibly_damaging(0.838) TCGA-XV-A9W5-01 1 209605512 209605512 C T MIR205HG Intron 0.22 TCGA-XV-A9W5-01 1 22310814 22310814 C T CELA3B Missense_Mutation p.S211F 0.35 deleterious(0) probably_damaging(0.98) TCGA-XV-A9W5-01 1 27272676 27272676 C G NUDC 3'UTR 0.26 TCGA-XV-A9W5-01 1 37271853 37271853 G A GRIK3 Silent p.N722N 0.37 TCGA-XV-A9W5-01 20 40727146 40727146 G A PTPRT Missense_Mutation p.P1254L 0.48 deleterious(0) probably_damaging(0.999) TCGA-XV-A9W5-01 20 61906933 61906933 A G ARFGAP1 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.995) TCGA-XV-A9W5-01 20 9459570 9459570 G A PLCB4 Missense_Mutation p.E1167K 0.19 tolerated_low_confidence(0.98) benign(0) TCGA-XV-A9W5-01 21 11058254 11058254 G A BAGE2 RNA 0.08 TCGA-XV-A9W5-01 21 40720497 40720497 A G HMGN1 Missense_Mutation p.S8P 0.53 tolerated(0.05) possibly_damaging(0.89) TCGA-XV-A9W5-01 22 19211480 19211480 C T CLTCL1 Silent p.K742K 0.38 TCGA-XV-A9W5-01 22 26164723 26164723 G A MYO18B Silent p.G280G 0.33 TCGA-XV-A9W5-01 2 113742435 113742435 C T IL36G Silent p.L107L 0.29 TCGA-XV-A9W5-01 2 137928336 137928336 C T THSD7B Silent p.V517V 0.23 TCGA-XV-A9W5-01 2 141986858 141986858 A G LRP1B Silent p.C248C 0.38 TCGA-XV-A9W5-01 2 165802230 165802230 G A SLC38A11 Silent p.S23S 0.26 TCGA-XV-A9W5-01 2 170002278 170002278 G A LRP2 Nonsense_Mutation p.Q4323* 0.27 TCGA-XV-A9W5-01 2 176812273 176812273 G A KIAA1715 Missense_Mutation p.P214L 0.28 deleterious(0.05) benign(0.082) TCGA-XV-A9W5-01 2 179463630 179463630 C T TTN Missense_Mutation p.R18936Q 0.30 TCGA-XV-A9W5-01 2 179481673 179481673 C T TTN Silent p.T15981T 0.29 TCGA-XV-A9W5-01 2 179613973 179613973 T C TTN Intron 0.36 TCGA-XV-A9W5-01 2 189875573 189875573 G A COL3A1 Missense_Mutation p.G1404E 0.37 unknown(0) TCGA-XV-A9W5-01 2 228681859 228681859 G A CCL20 3'UTR 0.31 TCGA-XV-A9W5-01 2 234526857 234526857 C T UGT1A8 Silent p.F168F 0.36 TCGA-XV-A9W5-01 2 31590850 31590850 G A XDH Missense_Mutation p.S725F 0.33 deleterious(0.01) benign(0.192) TCGA-XV-A9W5-01 2 33246090 33246090 C T LTBP1 Missense_Mutation p.S227L 0.34 tolerated(0.66) benign(0.001) TCGA-XV-A9W5-01 2 74699807 74699807 G A MRPL53 5'UTR 0.46 TCGA-XV-A9W5-01 3 124385939 124385939 G T KALRN Missense_Mutation p.R295S 0.44 tolerated(0.21) benign(0.056) TCGA-XV-A9W5-01 3 131300500 131300500 C T CPNE4 Missense_Mutation p.E264K 0.33 deleterious(0.03) benign(0.054) TCGA-XV-A9W5-01 3 37368006 37368006 C T GOLGA4 Silent p.S1565S 0.34 TCGA-XV-A9W5-01 3 55052265 55052265 G A CACNA2D3 Missense_Mutation p.D970N 0.28 deleterious(0.03) benign(0.276) TCGA-XV-A9W5-01 4 111469386 111469386 G A ENPEP Silent p.R685R 0.23 TCGA-XV-A9W5-01 4 111469387 111469387 G A ENPEP Missense_Mutation p.E686K 0.23 deleterious(0) probably_damaging(0.999) TCGA-XV-A9W5-01 4 129131132 129131132 C T LARP1B Missense_Mutation p.S890F 0.35 deleterious_low_confidence(0.04) benign(0.163) TCGA-XV-A9W5-01 4 13339678 13339678 G A HSP90AB2P RNA 0.31 TCGA-XV-A9W5-01 4 165891124 165891124 G T TRIM61 Silent p.R11R 0.33 TCGA-XV-A9W5-01 4 79204043 79204043 G A FRAS1 Missense_Mutation p.E393K 0.28 benign(0.001) TCGA-XV-A9W5-01 4 83347613 83347613 T C HNRNPDL Intron 0.22 TCGA-XV-A9W5-01 5 102249663 102249663 G A PAM Missense_Mutation p.M98I 0.36 deleterious(0.04) benign(0.309) TCGA-XV-A9W5-01 5 131007579 131007579 G A FNIP1 Missense_Mutation p.P853L 0.33 deleterious(0.01) benign(0.003) TCGA-XV-A9W5-01 5 138386725 138386725 G A SIL1 Silent p.V85V 0.30 TCGA-XV-A9W5-01 5 143853669 143853669 C T KCTD16 Missense_Mutation p.H427Y 0.30 tolerated(0.07) benign(0.335) TCGA-XV-A9W5-01 5 149245741 149245741 C T PDE6A Missense_Mutation p.V784I 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-XV-A9W5-01 5 24509859 24509859 G T CDH10 Missense_Mutation p.R358S 0.23 deleterious(0.01) possibly_damaging(0.632) TCGA-XV-A9W5-01 5 35704726 35704726 G A SPEF2 Silent p.K823K 0.36 TCGA-XV-A9W5-01 5 38337632 38337632 G A EGFLAM Silent p.G36G 0.25 TCGA-XV-A9W5-01 5 68572395 68572395 A T CDK7 Missense_Mutation p.N297I 0.33 deleterious(0.02) benign(0.013) TCGA-XV-A9W5-01 6 119611911 119611911 G A MAN1A1 Silent p.V278V 0.55 TCGA-XV-A9W5-01 6 136599589 136599589 A C BCLAF1 Missense_Mutation p.S144A 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-XV-A9W5-01 6 32188036 32188036 C T NOTCH4 Missense_Mutation p.M395I 0.31 tolerated(0.06) benign(0.32) TCGA-XV-A9W5-01 6 41162303 41162303 G T TREML2 Silent p.P215P 0.14 TCGA-XV-A9W5-01 6 51483877 51483877 G A PKHD1 3'UTR 0.40 TCGA-XV-A9W5-01 7 117307047 117307047 C T CFTR Missense_Mutation p.P1443L 0.23 tolerated(0.41) benign(0.017) TCGA-XV-A9W5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-XV-A9W5-01 7 143632561 143632561 C T OR2F2 Missense_Mutation p.P79L 0.17 deleterious(0) possibly_damaging(0.458) TCGA-XV-A9W5-01 7 157000431 157000431 T C UBE3C Silent p.F537F 0.54 TCGA-XV-A9W5-01 7 63727100 63727100 C T ZNF679 Silent p.F363F 0.27 TCGA-XV-A9W5-01 7 98249157 98249157 C T NPTX2 Missense_Mutation p.T210I 0.45 deleterious(0) benign(0.187) TCGA-XV-A9W5-01 8 113484891 113484891 G A CSMD3 Missense_Mutation p.S1775L 0.28 deleterious(0) probably_damaging(0.986) TCGA-XV-A9W5-01 8 77775587 77775587 G A ZFHX4 Missense_Mutation p.E3213K 0.27 probably_damaging(0.98) TCGA-XV-A9W5-01 9 101304269 101304269 G A GABBR2 Silent p.F172F 0.35 TCGA-XV-A9W5-01 9 101787216 101787216 G A COL15A1 Missense_Mutation p.D639N 0.26 deleterious(0.03) possibly_damaging(0.635) TCGA-XV-A9W5-01 9 110064323 110064323 C T RAD23B Silent p.I52I 0.45 TCGA-XV-A9W5-01 9 13125215 13125215 T C MPDZ Missense_Mutation p.N1603D 0.16 deleterious(0.05) benign(0.06) TCGA-XV-A9W5-01 9 137708903 137708903 C T COL5A1 Missense_Mutation p.P1385L 0.38 unknown(0) TCGA-XV-A9W5-01 9 3293098 3293098 C T RFX3 Missense_Mutation p.R237Q 0.10 deleterious(0) probably_damaging(0.925) TCGA-XV-A9W5-01 9 72501797 72501797 G A C9orf135 Missense_Mutation p.D165N 0.20 tolerated(0.31) benign(0.002) TCGA-XV-A9W5-01 9 90534094 90534094 C T SPATA31C1 Intron 0.29 TCGA-XV-A9W5-01 X 117788577 117788577 C T DOCK11 Missense_Mutation p.P1570S 0.83 tolerated(0.07) possibly_damaging(0.906) TCGA-XV-A9W5-01 X 148664727 148664727 C T MAGEA9B Missense_Mutation p.E37K 0.53 tolerated(0.25) benign(0.034) TCGA-XV-A9W5-01 X 86873070 86873070 G A KLHL4 Missense_Mutation p.R288Q 0.55 deleterious(0.01) possibly_damaging(0.669) TCGA-XV-AAZV-01 10 6483980 6483980 C T PRKCQ Missense_Mutation p.E571K 0.13 deleterious(0) probably_damaging(0.996) TCGA-XV-AAZV-01 10 68040374 68040374 G A CTNNA3 Missense_Mutation p.P580S 0.07 tolerated(0.1) unknown(0) TCGA-XV-AAZV-01 10 74628586 74628586 G A MCU Missense_Mutation p.E208K 0.09 deleterious(0.01) possibly_damaging(0.714) TCGA-XV-AAZV-01 10 97170499 97170499 G A SORBS1 Silent p.S282S 0.41 TCGA-XV-AAZV-01 11 114569013 114569013 G A NXPE2 Missense_Mutation p.D127N 0.39 deleterious(0.02) possibly_damaging(0.588) TCGA-XV-AAZV-01 11 126081563 126081563 C T FAM118B 5'UTR 0.24 TCGA-XV-AAZV-01 11 129794792 129794792 G A PRDM10 Silent p.F625F 0.26 TCGA-XV-AAZV-01 11 22249082 22249082 C A ANO5 Missense_Mutation p.L200I 0.23 tolerated(0.5) benign(0.437) TCGA-XV-AAZV-01 11 4144469 4144469 C T RRM1 Missense_Mutation p.A392V 0.22 deleterious_low_confidence(0) benign(0.236) TCGA-XV-AAZV-01 11 46702221 46702221 G A ARHGAP1 Missense_Mutation p.P238S 0.32 deleterious(0.01) benign(0.093) TCGA-XV-AAZV-01 11 57075909 57075909 G A TNKS1BP1 Missense_Mutation p.P1426S 0.22 tolerated(0.93) benign(0.004) TCGA-XV-AAZV-01 11 57996058 57996058 G A OR10Q1 Missense_Mutation p.S97L 0.34 deleterious(0) benign(0.102) TCGA-XV-AAZV-01 11 65828095 65828095 C T SF3B2 Missense_Mutation p.R558W 0.18 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 11 6913082 6913082 G A OR2D2 Missense_Mutation p.S217F 0.06 deleterious(0) possibly_damaging(0.493) TCGA-XV-AAZV-01 11 76910793 76910793 G A MYO7A Silent p.V1594V 0.30 TCGA-XV-AAZV-01 12 10168245 10168245 C T CLEC12B Missense_Mutation p.S200L 0.30 deleterious(0.01) benign(0.377) TCGA-XV-AAZV-01 12 10342643 10342643 C T TMEM52B Silent p.C132C 0.23 TCGA-XV-AAZV-01 12 10954384 10954384 C T TAS2R7 Silent p.E262E 0.26 TCGA-XV-AAZV-01 12 10954386 10954386 C T TAS2R7 Missense_Mutation p.E262K 0.26 tolerated(0.12) probably_damaging(0.962) TCGA-XV-AAZV-01 12 113447137 113447137 A G OAS2 Intron 0.26 TCGA-XV-AAZV-01 12 123814976 123814976 G A SBNO1 Missense_Mutation p.S375L 0.20 deleterious(0.05) probably_damaging(0.937) TCGA-XV-AAZV-01 12 319141 319141 C T SLC6A12 Silent p.K4K 0.18 TCGA-XV-AAZV-01 12 33535403 33535403 C T SYT10 Silent p.R417R 0.26 TCGA-XV-AAZV-01 12 48380671 48380671 C T COL2A1 Missense_Mutation p.G456S 0.24 probably_damaging(0.968) TCGA-XV-AAZV-01 12 57919750 57919750 C T MBD6 Silent p.P333P 0.30 TCGA-XV-AAZV-01 12 7843140 7843140 C T GDF3 Silent p.L143L 0.20 TCGA-XV-AAZV-01 12 95387964 95387964 C T NDUFA12 Missense_Mutation p.S80N 0.46 deleterious(0.03) possibly_damaging(0.521) TCGA-XV-AAZV-01 13 25745094 25745094 C G AMER2 Missense_Mutation p.G222R 0.45 tolerated(0.05) benign(0.003) TCGA-XV-AAZV-01 13 51948513 51948513 G A INTS6 Silent p.P645P 0.29 TCGA-XV-AAZV-01 13 88327724 88327724 G T SLITRK5 Silent p.A27A 0.16 TCGA-XV-AAZV-01 14 20248545 20248545 G A OR4M1 Missense_Mutation p.E22K 0.19 tolerated(0.07) benign(0.009) TCGA-XV-AAZV-01 14 22476342 22476342 C T TRAV19 Missense_Mutation p.S91F 0.26 deleterious(0) possibly_damaging(0.6) TCGA-XV-AAZV-01 14 57268513 57268513 G A OTX2 Silent p.F278F 0.33 TCGA-XV-AAZV-01 14 75302102 75302102 C T YLPM1 Silent p.T2143T 0.04 TCGA-XV-AAZV-01 14 94733313 94733313 G A PPP4R4 Missense_Mutation p.G799E 0.17 deleterious_low_confidence(0.01) benign(0.276) TCGA-XV-AAZV-01 14 96134535 96134535 C T TCL6 Intron 0.22 TCGA-XV-AAZV-01 14 96707789 96707789 C T BDKRB2 Missense_Mutation p.S375F 0.21 deleterious(0) probably_damaging(0.982) TCGA-XV-AAZV-01 14 96781877 96781877 G T ATG2B Silent p.P1135P 0.26 TCGA-XV-AAZV-01 15 22383362 22383362 C T OR4N4 Missense_Mutation p.S297F 0.10 deleterious(0) possibly_damaging(0.588) TCGA-XV-AAZV-01 15 38808405 38808405 C T RASGRP1 Missense_Mutation p.R223K 0.18 tolerated(0.26) possibly_damaging(0.867) TCGA-XV-AAZV-01 15 77763324 77763324 G A HMG20A Missense_Mutation p.A175T 0.32 deleterious(0.02) possibly_damaging(0.574) TCGA-XV-AAZV-01 15 93567871 93567871 C T CHD2 Missense_Mutation p.P1808L 0.18 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-XV-AAZV-01 16 58570969 58570969 C T CNOT1 Missense_Mutation p.R1857K 0.22 tolerated(0.24) benign(0.007) TCGA-XV-AAZV-01 16 72832434 72832434 C T ZFHX3 Missense_Mutation p.E1383K 0.19 possibly_damaging(0.696) TCGA-XV-AAZV-01 17 41141397 41141397 C T RUNDC1 Silent p.L233L 0.09 TCGA-XV-AAZV-01 17 42855559 42855559 G T ADAM11 Missense_Mutation p.G742V 0.30 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 17 5463059 5463059 G A NLRP1 Silent p.G319G 0.39 TCGA-XV-AAZV-01 17 78195464 78195464 C T SLC26A11 Silent p.P35P 0.21 TCGA-XV-AAZV-01 18 13884969 13884969 C T MC2R Silent p.P183P 0.25 TCGA-XV-AAZV-01 18 21649157 21649157 C T TTC39C Missense_Mutation p.R128W 0.36 deleterious(0) probably_damaging(0.968) TCGA-XV-AAZV-01 18 44266165 44266165 C T ST8SIA5 Missense_Mutation p.E181K 0.32 possibly_damaging(0.7) TCGA-XV-AAZV-01 18 66564659 66564659 A T CCDC102B Missense_Mutation p.K419N 0.04 deleterious(0) possibly_damaging(0.51) TCGA-XV-AAZV-01 19 12502682 12502682 G A ZNF799 Missense_Mutation p.S177F 0.21 deleterious(0.03) possibly_damaging(0.856) TCGA-XV-AAZV-01 19 20135087 20135087 T C ZNF682 Silent p.L34L 0.04 TCGA-XV-AAZV-01 19 20959111 20959111 T G ZNF66 5'Flank 0.21 TCGA-XV-AAZV-01 19 21933937 21933937 G A ZNF100 Intron 0.37 TCGA-XV-AAZV-01 19 3179675 3179675 G A S1PR4 Silent p.L295L 0.21 TCGA-XV-AAZV-01 19 44681806 44681806 G A ZNF226 Silent p.Q797Q 0.21 TCGA-XV-AAZV-01 19 51581215 51581215 G A KLK14 3'UTR 0.53 TCGA-XV-AAZV-01 19 51728741 51728741 C T CD33 Missense_Mutation p.S102F 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-XV-AAZV-01 19 53668211 53668211 T C ZNF665 Missense_Mutation p.E511G 0.04 deleterious(0.02) probably_damaging(0.986) TCGA-XV-AAZV-01 19 5831486 5831486 C T FUT6 3'UTR 0.26 TCGA-XV-AAZV-01 1 100214255 100214255 G A FRRS1 Missense_Mutation p.P24S 0.35 tolerated(0.24) possibly_damaging(0.624) TCGA-XV-AAZV-01 1 1269434 1269434 G A TAS1R3 Missense_Mutation p.E717K 0.33 deleterious(0.02) benign(0.269) TCGA-XV-AAZV-01 1 160607145 160607145 G A SLAMF1 Missense_Mutation p.S84F 0.05 tolerated(0.51) possibly_damaging(0.61) TCGA-XV-AAZV-01 1 176915225 176915225 C A ASTN1 Nonsense_Mutation p.G696* 0.39 TCGA-XV-AAZV-01 1 240370762 240370762 C T FMN2 Missense_Mutation p.P884S 0.29 unknown(0) TCGA-XV-AAZV-01 1 248004695 248004695 G A OR11L1 Silent p.F168F 0.34 TCGA-XV-AAZV-01 1 32044822 32044822 C T TINAGL1 Missense_Mutation p.R110C 0.30 deleterious(0.01) possibly_damaging(0.696) TCGA-XV-AAZV-01 1 36820009 36820009 G A STK40 Silent p.I193I 0.29 TCGA-XV-AAZV-01 20 54974146 54974146 C T CSTF1 Missense_Mutation p.P257S 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-XV-AAZV-01 20 5903544 5903544 G A CHGB Missense_Mutation p.E252K 0.29 deleterious(0.03) possibly_damaging(0.893) TCGA-XV-AAZV-01 21 44949839 44949839 G A HSF2BP Missense_Mutation p.P267L 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-XV-AAZV-01 22 21153429 21153429 G A PI4KA Silent p.L652L 0.12 TCGA-XV-AAZV-01 22 25263061 25263061 G A SGSM1 Missense_Mutation p.V310I 0.20 tolerated(0.2) benign(0.391) TCGA-XV-AAZV-01 2 103068725 103068725 C T IL18RAP 3'UTR 0.35 TCGA-XV-AAZV-01 2 119699964 119699964 G A MARCO Missense_Mutation p.E30K 0.20 tolerated(0.16) benign(0.094) TCGA-XV-AAZV-01 2 128186370 128186370 G A PROC Missense_Mutation p.G412S 0.28 deleterious(0.04) possibly_damaging(0.89) TCGA-XV-AAZV-01 2 155252517 155252517 G A GALNT13 Missense_Mutation p.D391N 0.20 tolerated(0.05) benign(0.006) TCGA-XV-AAZV-01 2 158182171 158182171 C T ERMN Missense_Mutation p.R8Q 0.29 benign(0) TCGA-XV-AAZV-01 2 179594481 179594481 C T TTN Missense_Mutation p.G6167S 0.16 TCGA-XV-AAZV-01 2 179641655 179641655 T A TTN Missense_Mutation p.N1646Y 0.15 TCGA-XV-AAZV-01 2 182363378 182363378 G A ITGA4 Silent p.V523V 0.21 TCGA-XV-AAZV-01 2 188348921 188348921 A T TFPI Missense_Mutation p.N186K 0.23 tolerated(0.59) benign(0.005) TCGA-XV-AAZV-01 2 196699084 196699084 C T DNAH7 Missense_Mutation p.M2982I 0.21 deleterious(0.04) benign(0.039) TCGA-XV-AAZV-01 2 218712503 218712503 G A TNS1 Missense_Mutation p.P788S 0.25 tolerated(1) benign(0.002) TCGA-XV-AAZV-01 2 233635925 233635925 C T KCNJ13 Missense_Mutation p.D50N 0.16 tolerated(0.05) benign(0.115) TCGA-XV-AAZV-01 2 238725997 238725997 T A RBM44 Missense_Mutation p.F146L 0.27 tolerated(0.12) benign(0.255) TCGA-XV-AAZV-01 2 68873256 68873256 C T PROKR1 Silent p.I101I 0.38 TCGA-XV-AAZV-01 2 74779490 74779490 G A LOXL3 Missense_Mutation p.A91V 0.38 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 2 89544375 89544375 G A IGKV2-30 Silent p.V83V 0.31 TCGA-XV-AAZV-01 2 97215076 97215076 G A ARID5A Missense_Mutation p.G47R 0.31 tolerated(0.1) benign(0.063) TCGA-XV-AAZV-01 2 99170905 99170905 A G INPP4A Missense_Mutation p.R512G 0.13 tolerated(0.41) benign(0.205) TCGA-XV-AAZV-01 3 108147604 108147604 C T MYH15 Missense_Mutation p.G1166E 0.31 deleterious(0.01) benign(0.186) TCGA-XV-AAZV-01 3 108833269 108833269 G A MORC1 Silent p.F27F 0.37 TCGA-XV-AAZV-01 3 13655632 13655632 G A FBLN2 Missense_Mutation p.R566Q 0.38 tolerated(0.3) benign(0.022) TCGA-XV-AAZV-01 3 167045851 167045851 C A ZBBX Silent p.L247L 0.25 TCGA-XV-AAZV-01 3 175184885 175184885 G A NAALADL2 Silent p.K482K 0.34 TCGA-XV-AAZV-01 4 125590288 125590288 G A ANKRD50 Missense_Mutation p.P1382S 0.32 tolerated_low_confidence(0.45) benign(0) TCGA-XV-AAZV-01 4 148453679 148453679 G A EDNRA Nonsense_Mutation p.W190* 0.19 TCGA-XV-AAZV-01 4 166184451 166184451 C T KLHL2 Missense_Mutation p.R166W 0.17 deleterious(0) possibly_damaging(0.484) TCGA-XV-AAZV-01 4 175710079 175710079 C T GLRA3 Silent p.K29K 0.29 TCGA-XV-AAZV-01 4 3318308 3318308 C T RGS12 Silent p.V137V 0.31 TCGA-XV-AAZV-01 4 70513300 70513300 C T UGT2A1 Silent p.G21G 0.13 TCGA-XV-AAZV-01 4 70810601 70810601 C T CSN1S1 Missense_Mutation p.P146S 0.17 deleterious(0.04) probably_damaging(0.932) TCGA-XV-AAZV-01 4 70810602 70810602 C T CSN1S1 Missense_Mutation p.P146L 0.17 tolerated(0.31) probably_damaging(0.958) TCGA-XV-AAZV-01 4 8089900 8089900 G A ABLIM2 Silent p.L150L 0.40 TCGA-XV-AAZV-01 4 81967341 81967341 G A BMP3 Missense_Mutation p.V256I 0.25 deleterious(0.02) possibly_damaging(0.467) TCGA-XV-AAZV-01 5 140537684 140537684 C T PCDHB17 3'UTR 0.34 TCGA-XV-AAZV-01 5 167674541 167674541 G A TENM2 Silent p.T2199T 0.31 TCGA-XV-AAZV-01 5 42807175 42807175 C T SEPP1 Missense_Mutation p.G80E 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-XV-AAZV-01 6 144812094 144812094 C T UTRN Silent p.F1431F 0.35 TCGA-XV-AAZV-01 6 28540531 28540531 A C SCAND3 Missense_Mutation p.N1045K 0.30 tolerated(0.11) probably_damaging(0.954) TCGA-XV-AAZV-01 6 29589549 29589549 C A GABBR1 Missense_Mutation p.A371S 0.29 deleterious(0) probably_damaging(0.948) TCGA-XV-AAZV-01 6 31846768 31846768 C T SLC44A4 5'UTR 0.30 TCGA-XV-AAZV-01 6 31846769 31846769 C T SLC44A4 5'UTR 0.30 TCGA-XV-AAZV-01 6 33154421 33154421 G A COL11A2 Nonsense_Mutation p.Q261* 0.05 TCGA-XV-AAZV-01 6 34008334 34008334 T A GRM4 Missense_Mutation p.N454Y 0.28 deleterious(0) probably_damaging(0.963) TCGA-XV-AAZV-01 6 70966503 70966503 C T COL9A1 Missense_Mutation p.E491K 0.21 possibly_damaging(0.725) TCGA-XV-AAZV-01 7 103474025 103474025 G A RELN Silent p.I144I 0.14 TCGA-XV-AAZV-01 7 106830635 106830635 C T HBP1 Missense_Mutation p.P314S 0.03 deleterious(0) probably_damaging(0.909) TCGA-XV-AAZV-01 7 119914737 119914737 C T KCND2 Silent p.I17I 0.42 TCGA-XV-AAZV-01 7 121624136 121624136 C T PTPRZ1 Missense_Mutation p.S298F 0.36 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZV-01 7 129847867 129847867 G A SSMEM1 Silent p.G39G 0.12 TCGA-XV-AAZV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-XV-AAZV-01 7 142641756 142641756 C T KEL Missense_Mutation p.E463K 0.30 tolerated(0.87) benign(0.009) TCGA-XV-AAZV-01 7 142749671 142749671 G A OR6V1 Silent p.R78R 0.20 TCGA-XV-AAZV-01 7 7459575 7459575 C A COL28A1 Missense_Mutation p.G670W 0.16 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 8 110631233 110631233 G A SYBU Missense_Mutation p.P89S 0.32 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZV-01 8 118169935 118169935 C T SLC30A8 Missense_Mutation p.L142F 0.26 deleterious(0.01) benign(0.434) TCGA-XV-AAZV-01 8 139601599 139601599 G A COL22A1 Missense_Mutation p.P1593L 0.28 unknown(0) TCGA-XV-AAZV-01 8 14412295 14412295 C T SGCZ Missense_Mutation p.M60I 0.22 tolerated(0.56) benign(0.01) TCGA-XV-AAZV-01 8 24188812 24188812 G A ADAM28 Missense_Mutation p.G418E 0.27 deleterious(0) probably_damaging(0.941) TCGA-XV-AAZV-01 8 24257694 24257694 G A ADAMDEC1 Silent p.K341K 0.22 TCGA-XV-AAZV-01 8 52252244 52252244 G A PXDNL Silent p.S1362S 0.33 TCGA-XV-AAZV-01 8 61178549 61178549 G A CA8 Missense_Mutation p.H118Y 0.33 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 8 73848969 73848969 G A KCNB2 Missense_Mutation p.R460Q 0.25 tolerated(0.07) possibly_damaging(0.611) TCGA-XV-AAZV-01 9 107361685 107361685 C T OR13C5 Missense_Mutation p.E4K 0.23 tolerated(0.5) benign(0.002) TCGA-XV-AAZV-01 9 120475728 120475728 C T TLR4 Missense_Mutation p.S441L 0.30 deleterious(0) probably_damaging(0.993) TCGA-XV-AAZV-01 9 14776192 14776192 G A FREM1 Silent p.I1484I 0.40 TCGA-XV-AAZV-01 9 21006954 21006954 C T PTPLAD2 3'UTR 0.27 TCGA-XV-AAZV-01 9 84606124 84606124 C T SPATA31D1 Missense_Mutation p.L247F 0.34 tolerated(0.16) possibly_damaging(0.899) TCGA-XV-AAZV-01 9 95397502 95397502 G A IPPK Silent p.I335I 0.42 TCGA-XV-AAZV-01 X 100667782 100667782 C T HNRNPH2 Missense_Mutation p.S269L 0.34 tolerated(0.26) benign(0.315) TCGA-XV-AAZV-01 X 106482206 106482206 G A PIH1D3 Missense_Mutation p.E162K 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-XV-AAZV-01 X 134166336 134166336 A C FAM127A 5'UTR 0.36 TCGA-XV-AAZV-01 X 138644267 138644267 G A F9 3'UTR 0.13 TCGA-XV-AAZV-01 X 152938024 152938024 C T PNCK Missense_Mutation p.R149H 0.25 tolerated(0.15) probably_damaging(0.955) TCGA-XV-AAZV-01 X 153662748 153662748 G A ATP6AP1 Silent p.Q293Q 0.13 TCGA-XV-AAZV-01 X 1584906 1584906 C T P2RY8 Silent p.T182T 0.16 TCGA-XV-AAZV-01 X 16669216 16669216 G A S100G Silent p.K29K 0.30 TCGA-XV-AAZV-01 X 17819077 17819077 T C RAI2 Missense_Mutation p.K352E 0.18 deleterious(0) unknown(0) TCGA-XV-AAZV-01 X 3228396 3228396 G A MXRA5 Silent p.C2616C 0.29 TCGA-XV-AAZV-01 X 48116688 48116688 C T SSX1 Silent p.D4D 0.20 TCGA-XV-AAZV-01 X 49105692 49105692 C T CCDC22 Missense_Mutation p.T535M 0.21 deleterious(0) probably_damaging(1) TCGA-XV-AAZV-01 X 64722039 64722039 C T ZC3H12B Silent p.T487T 0.20 TCGA-XV-AAZV-01 X 71813089 71813089 G A PHKA1 Silent p.S1036S 0.20 TCGA-XV-AAZV-01 X 71813090 71813090 G A PHKA1 Missense_Mutation p.S1036F 0.20 deleterious(0.01) benign(0.013) TCGA-XV-AAZV-01 X 73963876 73963876 C T KIAA2022 Silent p.R172R 0.19 TCGA-XV-AAZW-01 10 103339236 103339236 G T POLL Silent p.R568R 0.75 TCGA-XV-AAZW-01 10 103339237 103339237 G A POLL Silent p.Y567Y 0.74 TCGA-XV-AAZW-01 10 104113360 104113360 A G GBF1 Silent p.L196L 0.69 TCGA-XV-AAZW-01 10 124377663 124377663 G A DMBT1 Silent p.V1545V 0.74 TCGA-XV-AAZW-01 10 21962394 21962394 C T MLLT10 Silent p.H389H 0.69 TCGA-XV-AAZW-01 10 46999711 46999711 G A GPRIN2 Silent p.K277K 0.35 TCGA-XV-AAZW-01 10 98825843 98825843 C T SLIT1 Silent p.L138L 0.67 TCGA-XV-AAZW-01 11 123596843 123596843 A G ZNF202 Silent p.S603S 0.36 TCGA-XV-AAZW-01 11 124252539 124252539 C T OR8B2 Missense_Mutation p.R234K 0.32 deleterious_low_confidence(0.04) benign(0.083) TCGA-XV-AAZW-01 11 128774352 128774352 C G C11orf45 Missense_Mutation p.R37T 0.35 tolerated_low_confidence(0.08) benign(0.402) TCGA-XV-AAZW-01 11 128781550 128781550 C T KCNJ5 Missense_Mutation p.P128S 0.43 deleterious(0.01) benign(0.316) TCGA-XV-AAZW-01 11 19901644 19901644 G T NAV2 Missense_Mutation p.Q247H 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.466) TCGA-XV-AAZW-01 11 314284 314284 C A IFITM1 Silent p.V38V 0.34 TCGA-XV-AAZW-01 11 5474866 5474866 C T OR51I2 Nonsense_Mutation p.R50* 0.44 TCGA-XV-AAZW-01 11 55594778 55594778 C T OR5L2 Silent p.F28F 0.35 TCGA-XV-AAZW-01 11 55606424 55606424 A G OR5D16 Missense_Mutation p.N66S 0.38 tolerated(1) benign(0) TCGA-XV-AAZW-01 11 61538984 61538984 C T MYRF Silent p.H251H 0.40 TCGA-XV-AAZW-01 11 63486244 63486244 T A RTN3 Silent p.S90S 0.29 TCGA-XV-AAZW-01 11 64821979 64821979 G A NAALADL1 Missense_Mutation p.P279S 0.22 deleterious(0.04) possibly_damaging(0.685) TCGA-XV-AAZW-01 11 66453846 66453846 G A SPTBN2 Intron 0.41 TCGA-XV-AAZW-01 11 92088352 92088352 C T FAT3 Missense_Mutation p.S1025F 0.57 probably_damaging(0.974) TCGA-XV-AAZW-01 12 113357319 113357319 C T OAS1 Missense_Mutation p.P356S 0.24 deleterious(0.01) benign(0.001) TCGA-XV-AAZW-01 12 132398898 132398898 C T ULK1 Missense_Mutation p.R417W 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-XV-AAZW-01 12 133324557 133324557 G A ANKLE2 Missense_Mutation p.A364V 0.43 deleterious(0.03) probably_damaging(0.948) TCGA-XV-AAZW-01 12 20903696 20903696 C T SLCO1C1 Missense_Mutation p.S629L 0.41 deleterious(0) possibly_damaging(0.515) TCGA-XV-AAZW-01 12 21428274 21428274 G A SLCO1A2 Intron 0.34 TCGA-XV-AAZW-01 12 34175696 34175696 C T ALG10 Silent p.S54S 0.38 TCGA-XV-AAZW-01 12 47472375 47472375 G A AMIGO2 Silent p.F137F 0.36 TCGA-XV-AAZW-01 12 52911937 52911937 C T KRT5 Missense_Mutation p.E261K 0.43 deleterious(0) probably_damaging(1) TCGA-XV-AAZW-01 12 54756711 54756711 C T GPR84 Missense_Mutation p.D309N 0.67 tolerated(0.43) benign(0.005) TCGA-XV-AAZW-01 12 54756712 54756712 C T GPR84 Silent p.P308P 0.67 TCGA-XV-AAZW-01 12 64812851 64812851 C T XPOT Missense_Mutation p.R156C 0.37 deleterious(0.03) possibly_damaging(0.88) TCGA-XV-AAZW-01 12 6838503 6838503 G A COPS7A Missense_Mutation p.V140M 0.36 deleterious(0) probably_damaging(0.954) TCGA-XV-AAZW-01 12 88472889 88472889 G A CEP290 Nonsense_Mutation p.R1782* 0.67 TCGA-XV-AAZW-01 12 89996908 89996908 C T ATP2B1 Missense_Mutation p.R991Q 0.73 deleterious(0.02) probably_damaging(0.996) TCGA-XV-AAZW-01 13 32351572 32351572 C T RXFP2 Missense_Mutation p.S234F 0.37 deleterious(0) possibly_damaging(0.514) TCGA-XV-AAZW-01 13 32913597 32913597 C T BRCA2 Missense_Mutation p.P1702L 0.40 tolerated(0.08) benign(0.029) TCGA-XV-AAZW-01 13 84454402 84454402 A G SLITRK1 Missense_Mutation p.V414A 0.42 deleterious(0) possibly_damaging(0.745) TCGA-XV-AAZW-01 14 104573658 104573658 C T ASPG Missense_Mutation p.P470L 0.41 deleterious(0) probably_damaging(1) TCGA-XV-AAZW-01 14 105518050 105518050 C T GPR132 Missense_Mutation p.V142M 0.37 tolerated(0.36) benign(0.148) TCGA-XV-AAZW-01 14 106725622 106725622 C T IGHV3-23 Silent p.V11V 0.15 TCGA-XV-AAZW-01 14 107178892 107178892 G T IGHV2-70 Silent p.S95S 0.38 TCGA-XV-AAZW-01 14 33684438 33684438 G T NPAS3 Missense_Mutation p.R64L 0.33 deleterious(0) benign(0.25) TCGA-XV-AAZW-01 14 33684439 33684439 G A NPAS3 Silent p.R64R 0.33 TCGA-XV-AAZW-01 14 70635101 70635101 G A SLC8A3 Silent p.F13F 0.21 TCGA-XV-AAZW-01 14 88652406 88652406 C T KCNK10 Missense_Mutation p.D369N 0.53 deleterious(0.04) possibly_damaging(0.691) TCGA-XV-AAZW-01 15 100996251 100996251 C T CERS3 Nonsense_Mutation p.W282* 0.36 TCGA-XV-AAZW-01 15 23932346 23932346 C T NDN Missense_Mutation p.D7N 0.33 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-XV-AAZW-01 15 24923835 24923835 A T NPAP1 Missense_Mutation p.I941F 0.37 tolerated(0.17) benign(0.327) TCGA-XV-AAZW-01 15 27772662 27772662 G A GABRG3 Missense_Mutation p.D317N 0.20 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZW-01 15 39874669 39874669 C T THBS1 Nonsense_Mutation p.Q115* 0.46 TCGA-XV-AAZW-01 15 41228889 41228889 G A DLL4 Missense_Mutation p.M568I 0.54 tolerated(0.11) benign(0.443) TCGA-XV-AAZW-01 15 43701149 43701149 C T TP53BP1 Missense_Mutation p.R1849H 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-XV-AAZW-01 15 51687060 51687060 G A GLDN Silent p.G190G 0.38 TCGA-XV-AAZW-01 15 66729144 66729144 C G MAP2K1 Missense_Mutation p.L118V 0.45 deleterious(0.02) probably_damaging(1) TCGA-XV-AAZW-01 15 99500752 99500752 C T IGF1R 3'UTR 0.38 TCGA-XV-AAZW-01 16 14674774 14674774 G A PARN Missense_Mutation p.H407Y 0.53 tolerated(1) benign(0.002) TCGA-XV-AAZW-01 16 14969039 14969039 C T NOMO1 Missense_Mutation p.T734I 0.35 tolerated(0.05) benign(0.097) TCGA-XV-AAZW-01 16 19455440 19455440 C T TMC5 Missense_Mutation p.R276C 0.33 deleterious(0.03) benign(0.001) TCGA-XV-AAZW-01 16 20648710 20648710 G A ACSM1 Missense_Mutation p.P394S 0.28 tolerated(0.08) benign(0.038) TCGA-XV-AAZW-01 16 31510639 31510639 G A C16orf58 Missense_Mutation p.T195I 0.27 tolerated(0.74) benign(0.002) TCGA-XV-AAZW-01 16 3254348 3254348 G C OR1F1 Missense_Mutation p.M34I 0.47 deleterious(0.03) benign(0.365) TCGA-XV-AAZW-01 16 53504693 53504693 C T RBL2 Silent p.L854L 0.42 TCGA-XV-AAZW-01 16 55895349 55895349 G A CES5A Missense_Mutation p.S326F 0.43 deleterious(0.02) benign(0.257) TCGA-XV-AAZW-01 16 67684009 67684009 A T RLTPR Missense_Mutation p.T714S 0.54 tolerated(0.5) benign(0.001) TCGA-XV-AAZW-01 16 70937964 70937964 G T HYDIN Nonsense_Mutation p.Y2840* 0.35 TCGA-XV-AAZW-01 17 12666868 12666868 C T MYOCD Silent p.T956T 0.33 TCGA-XV-AAZW-01 17 35454790 35454790 C T ACACA Missense_Mutation p.R2232Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZW-01 17 36704813 36704813 G A SRCIN1 Missense_Mutation p.R1084C 0.47 deleterious(0) probably_damaging(0.959) TCGA-XV-AAZW-01 17 38643329 38643329 C T TNS4 Missense_Mutation p.S416N 0.39 tolerated(0.48) benign(0.025) TCGA-XV-AAZW-01 17 48653524 48653524 G A CACNA1G Silent p.G587G 0.64 TCGA-XV-AAZW-01 17 4883482 4883482 G A CAMTA2 Missense_Mutation p.R402C 0.45 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-XV-AAZW-01 17 73625332 73625332 C T RECQL5 Missense_Mutation p.G724E 0.56 tolerated(0.3) benign(0.026) TCGA-XV-AAZW-01 17 8480604 8480604 G A MYH10 Missense_Mutation p.L195F 0.35 possibly_damaging(0.857) TCGA-XV-AAZW-01 18 13056543 13056543 C G CEP192 Missense_Mutation p.I1318M 0.42 tolerated(0.06) possibly_damaging(0.528) TCGA-XV-AAZW-01 18 31323770 31323770 G A ASXL3 Missense_Mutation p.D1320N 0.41 benign(0.388) TCGA-XV-AAZW-01 18 39567815 39567815 G A PIK3C3 Missense_Mutation p.D191N 0.44 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZW-01 18 52895516 52895516 G A TCF4 Silent p.L754L 0.40 TCGA-XV-AAZW-01 18 74091444 74091444 C T ZNF516 Missense_Mutation p.A876T 0.41 tolerated(0.08) benign(0.032) TCGA-XV-AAZW-01 19 12491757 12491757 G A CTD-3105H18.14 3'UTR 0.41 TCGA-XV-AAZW-01 19 13041455 13041455 G A FARSA Missense_Mutation p.P86S 0.54 tolerated(0.64) benign(0) TCGA-XV-AAZW-01 19 16178422 16178422 C T TPM4 5'UTR 0.33 TCGA-XV-AAZW-01 19 19338799 19338799 G A NCAN Silent p.L790L 0.40 TCGA-XV-AAZW-01 19 1986862 1986862 G A BTBD2 Silent p.P461P 0.47 TCGA-XV-AAZW-01 19 22941607 22941607 G T ZNF99 Silent p.P368P 0.46 TCGA-XV-AAZW-01 19 2425945 2425945 G A TMPRSS9 Silent p.L1013L 0.30 TCGA-XV-AAZW-01 19 45575059 45575059 C A ZNF296 Missense_Mutation p.G410W 0.38 deleterious(0) probably_damaging(1) TCGA-XV-AAZW-01 19 57956028 57956028 C T ZNF749 Silent p.I504I 0.25 TCGA-XV-AAZW-01 1 100483314 100483314 C T SLC35A3 Missense_Mutation p.S277L 0.33 deleterious(0) probably_damaging(0.943) TCGA-XV-AAZW-01 1 104162256 104162256 G A AMY2A Missense_Mutation p.M198I 0.13 tolerated(0.06) benign(0.041) TCGA-XV-AAZW-01 1 151787402 151787402 G A RORC Silent p.S266S 0.52 TCGA-XV-AAZW-01 1 152326042 152326042 C T FLG2 Missense_Mutation p.G1407E 0.46 probably_damaging(0.969) TCGA-XV-AAZW-01 1 158549376 158549376 T A OR10X1 Missense_Mutation p.D105V 0.27 tolerated(0.26) benign(0.081) TCGA-XV-AAZW-01 1 16355339 16355339 G C CLCNKA Missense_Mutation p.R351P 0.41 deleterious(0) probably_damaging(0.997) TCGA-XV-AAZW-01 1 165859560 165859560 G A UCK2 Silent p.K73K 0.41 TCGA-XV-AAZW-01 1 16935094 16935094 G A NBPF1 5'UTR 0.19 TCGA-XV-AAZW-01 1 181726119 181726119 C T CACNA1E Missense_Mutation p.R1396C 0.35 deleterious(0) possibly_damaging(0.898) TCGA-XV-AAZW-01 1 186386745 186386745 C T C1orf27 Missense_Mutation p.P419L 0.27 tolerated(0.51) benign(0.007) TCGA-XV-AAZW-01 1 190423949 190423949 A T BRINP3 Missense_Mutation p.S24R 0.37 tolerated_low_confidence(0.12) benign(0.202) TCGA-XV-AAZW-01 1 218610760 218610760 C G TGFB2 Missense_Mutation p.H364Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZW-01 1 22974111 22974111 C T C1QC Silent p.T191T 0.43 TCGA-XV-AAZW-01 1 240072191 240072191 G A CHRM3 Silent p.R480R 0.43 TCGA-XV-AAZW-01 1 24995768 24995768 A G SRRM1 Missense_Mutation p.K632E 0.39 unknown(0) TCGA-XV-AAZW-01 1 42046921 42046921 G A HIVEP3 Missense_Mutation p.P1183L 0.44 probably_damaging(0.953) TCGA-XV-AAZW-01 1 70616842 70616842 T G LRRC40 Silent p.R496R 0.42 TCGA-XV-AAZW-01 1 75037584 75037584 G A C1orf173 Silent p.T1270T 0.31 TCGA-XV-AAZW-01 20 31814227 31814227 G A BPIFA3 Silent p.K184K 0.32 TCGA-XV-AAZW-01 20 31876586 31876586 T A BPIFB1 Missense_Mutation p.I52N 0.43 deleterious(0) probably_damaging(0.973) TCGA-XV-AAZW-01 20 33502132 33502132 C T ACSS2 Silent p.F242F 0.43 TCGA-XV-AAZW-01 20 34240578 34240578 T - RBM12 Frame_Shift_Del p.K889Nfs*29 0.32 TCGA-XV-AAZW-01 20 35743675 35743675 G A MROH8 Silent p.I839I 0.40 TCGA-XV-AAZW-01 20 49626348 49626348 G A KCNG1 Silent p.F176F 0.41 TCGA-XV-AAZW-01 21 43816192 43816192 G A TMPRSS3 5'UTR 0.77 TCGA-XV-AAZW-01 22 22892280 22892280 G A PRAME Missense_Mutation p.S274F 0.72 deleterious(0.02) benign(0.104) TCGA-XV-AAZW-01 22 39909591 39909591 C T MIEF1 Missense_Mutation p.P219S 0.79 deleterious(0.04) probably_damaging(0.999) TCGA-XV-AAZW-01 2 112687080 112687080 C A MERTK Missense_Mutation p.P149T 0.40 tolerated(0.68) benign(0.026) TCGA-XV-AAZW-01 2 112751933 112751933 G A MERTK Missense_Mutation p.G468R 0.34 deleterious(0.01) probably_damaging(1) TCGA-XV-AAZW-01 2 16769351 16769351 C T FAM49A Missense_Mutation p.E13K 0.50 tolerated(0.23) benign(0.028) TCGA-XV-AAZW-01 2 170037971 170037971 G A LRP2 Silent p.L3386L 0.39 TCGA-XV-AAZW-01 2 179580376 179580376 C T TTN Missense_Mutation p.E8589K 0.43 TCGA-XV-AAZW-01 2 179595882 179595882 C T TTN Missense_Mutation p.G5837E 0.37 TCGA-XV-AAZW-01 2 179613768 179613768 C T TTN Intron 0.33 TCGA-XV-AAZW-01 2 206659717 206659717 G A NRP2 Missense_Mutation p.E911K 0.50 deleterious(0) probably_damaging(0.997) TCGA-XV-AAZW-01 2 216964908 216964908 T C TMEM169 Silent p.S179S 0.37 TCGA-XV-AAZW-01 2 228111451 228111451 C T COL4A3 Silent p.I146I 0.34 TCGA-XV-AAZW-01 2 242380943 242380943 C T FARP2 Silent p.L461L 0.55 TCGA-XV-AAZW-01 2 3391549 3391549 C T TRAPPC12 Missense_Mutation p.S52L 0.29 deleterious_low_confidence(0.01) benign(0.217) TCGA-XV-AAZW-01 2 61436081 61436081 C T USP34 Missense_Mutation p.D2958N 0.33 deleterious(0) probably_damaging(0.992) TCGA-XV-AAZW-01 3 102183059 102183059 A C ZPLD1 Missense_Mutation p.N258T 0.38 tolerated(0.37) probably_damaging(0.92) TCGA-XV-AAZW-01 3 125271323 125271323 G A OSBPL11 Silent p.I452I 0.48 TCGA-XV-AAZW-01 3 127340601 127340601 C T MCM2 Silent p.I900I 0.45 TCGA-XV-AAZW-01 3 142747446 142747446 C T U2SURP Missense_Mutation p.A523V 0.46 tolerated(0.22) benign(0.119) TCGA-XV-AAZW-01 3 146171892 146171892 G T PLSCR2 Missense_Mutation p.P200Q 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-XV-AAZW-01 3 3084741 3084741 C T CNTN4 Silent p.I864I 0.48 TCGA-XV-AAZW-01 3 38739037 38739037 C T SCN10A Missense_Mutation p.E1892K 0.40 tolerated(0.23) possibly_damaging(0.873) TCGA-XV-AAZW-01 3 43618692 43618692 G A ANO10 Silent p.F218F 0.27 TCGA-XV-AAZW-01 3 46062836 46062836 G A XCR1 Silent p.L202L 0.44 TCGA-XV-AAZW-01 3 51347719 51347719 C T DOCK3 Silent p.F993F 0.54 TCGA-XV-AAZW-01 3 71037156 71037156 C T FOXP1 Missense_Mutation p.A381T 0.05 tolerated(0.67) benign(0.004) TCGA-XV-AAZW-01 4 103585851 103585851 G A MANBA Silent p.L492L 0.46 TCGA-XV-AAZW-01 4 114280253 114280253 A T ANK2 Silent p.T3493T 0.40 TCGA-XV-AAZW-01 4 114280254 114280254 C T ANK2 Nonsense_Mutation p.Q3494* 0.43 TCGA-XV-AAZW-01 4 166964427 166964427 G A TLL1 Silent p.A460A 0.41 TCGA-XV-AAZW-01 4 169432633 169432633 G A PALLD 5'UTR 0.37 TCGA-XV-AAZW-01 4 184605985 184605985 C T TRAPPC11 Missense_Mutation p.L520F 0.62 deleterious(0.01) possibly_damaging(0.849) TCGA-XV-AAZW-01 4 48990633 48990633 G A CWH43 Nonsense_Mutation p.W61* 0.43 TCGA-XV-AAZW-01 4 71062263 71062263 G A ODAM Translation_Start_Site p.M1? 0.56 deleterious(0) benign(0.216) TCGA-XV-AAZW-01 5 109124642 109124642 C T MAN2A1 Missense_Mutation p.H590Y 0.55 deleterious(0.01) benign(0.02) TCGA-XV-AAZW-01 5 13830150 13830150 C T DNAH5 Silent p.G2078G 0.36 TCGA-XV-AAZW-01 5 140580483 140580483 G A PCDHB11 Missense_Mutation p.G379E 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-XV-AAZW-01 5 141975020 141975020 C T FGF1 Silent p.L101L 0.32 TCGA-XV-AAZW-01 5 147665598 147665598 G A SPINK13 Missense_Mutation p.G91E 0.43 deleterious(0) probably_damaging(0.996) TCGA-XV-AAZW-01 5 158140034 158140034 G A EBF1 Missense_Mutation p.S438L 0.42 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-XV-AAZW-01 5 176025814 176025814 G A GPRIN1 Missense_Mutation p.S341F 0.33 deleterious(0.04) possibly_damaging(0.731) TCGA-XV-AAZW-01 5 35771765 35771765 G A SPEF2 Missense_Mutation p.A1286T 0.46 tolerated(0.5) benign(0.004) TCGA-XV-AAZW-01 5 35860956 35860956 G C IL7R Missense_Mutation p.D29H 0.42 deleterious(0.01) probably_damaging(0.973) TCGA-XV-AAZW-01 5 38886271 38886271 C T OSMR Missense_Mutation p.L324F 0.37 tolerated(0.28) possibly_damaging(0.467) TCGA-XV-AAZW-01 5 71757121 71757121 G A ZNF366 Missense_Mutation p.P68L 0.44 deleterious_low_confidence(0.02) benign(0.027) TCGA-XV-AAZW-01 5 86628432 86628432 A C RASA1 Missense_Mutation p.K267N 0.24 deleterious(0.04) benign(0.081) TCGA-XV-AAZW-01 6 117861933 117861933 A G DCBLD1 Missense_Mutation p.R402G 0.59 deleterious(0.03) benign(0.291) TCGA-XV-AAZW-01 6 136508200 136508200 G A PDE7B Missense_Mutation p.E358K 0.71 tolerated(0.25) benign(0.077) TCGA-XV-AAZW-01 6 159653608 159653608 C G FNDC1 Missense_Mutation p.H688Q 0.75 tolerated_low_confidence(0.13) unknown(0) TCGA-XV-AAZW-01 6 26087702 26087702 C T HFE Silent p.L12L 0.05 TCGA-XV-AAZW-01 6 33052754 33052754 C T HLA-DPB1 Missense_Mutation p.S131F 0.33 deleterious(0) probably_damaging(0.97) TCGA-XV-AAZW-01 6 36291251 36291251 C A C6orf222 Missense_Mutation p.R430S 0.43 tolerated(0.14) possibly_damaging(0.765) TCGA-XV-AAZW-01 6 4116046 4116046 C G ECI2 3'UTR 0.24 TCGA-XV-AAZW-01 6 50681713 50681713 C T TFAP2D 5'UTR 0.42 TCGA-XV-AAZW-01 6 73000536 73000536 T A RIMS1 Missense_Mutation p.S1237T 0.78 deleterious(0.01) benign(0.4) TCGA-XV-AAZW-01 6 75853043 75853043 G A COL12A1 Silent p.V1584V 0.81 TCGA-XV-AAZW-01 6 96651050 96651050 G A FUT9 Missense_Mutation p.G7R 0.81 tolerated(0.51) benign(0.103) TCGA-XV-AAZW-01 7 100184221 100184221 C T FBXO24 5'Flank 0.75 TCGA-XV-AAZW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.68 deleterious(0) probably_damaging(0.967) TCGA-XV-AAZW-01 7 143792203 143792203 G A OR2A12 Translation_Start_Site p.M1? 0.72 deleterious(0.01) probably_damaging(0.98) TCGA-XV-AAZW-01 7 14622703 14622703 G A DGKB Missense_Mutation p.T499I 0.62 deleterious(0) probably_damaging(0.993) TCGA-XV-AAZW-01 7 146471360 146471360 C T CNTNAP2 Intron 0.60 TCGA-XV-AAZW-01 7 151873912 151873912 C T KMT2C Missense_Mutation p.D2876N 0.70 possibly_damaging(0.479) TCGA-XV-AAZW-01 7 20418714 20418714 G A ITGB8 Silent p.K143K 0.57 TCGA-XV-AAZW-01 7 21631127 21631127 G A DNAH11 Missense_Mutation p.G867S 0.68 benign(0.012) TCGA-XV-AAZW-01 7 3658827 3658827 G T SDK1 Missense_Mutation p.W138C 0.35 deleterious(0) probably_damaging(1) TCGA-XV-AAZW-01 7 44684944 44684944 C T OGDH Missense_Mutation p.R81C 0.42 deleterious(0) possibly_damaging(0.891) TCGA-XV-AAZW-01 7 6731942 6731942 G A ZNF12 Missense_Mutation p.R211C 0.19 deleterious(0.01) benign(0.393) TCGA-XV-AAZW-01 7 77522935 77522935 A G PHTF2 Missense_Mutation p.Y19C 0.36 deleterious(0) probably_damaging(0.978) TCGA-XV-AAZW-01 7 82546052 82546052 C T PCLO Silent p.R3750R 0.66 TCGA-XV-AAZW-01 7 87912429 87912429 G A STEAP4 Missense_Mutation p.R171C 0.28 deleterious(0.02) benign(0.006) TCGA-XV-AAZW-01 7 99355847 99355847 G A CYP3A4 Missense_Mutation p.P474L 0.63 deleterious(0) possibly_damaging(0.803) TCGA-XV-AAZW-01 8 12958165 12958165 C T DLC1 Missense_Mutation p.D561N 0.37 deleterious(0.05) benign(0.005) TCGA-XV-AAZW-01 8 139165029 139165029 G T FAM135B Silent p.P563P 0.45 TCGA-XV-AAZW-01 8 144898918 144898919 TG - PUF60 Frame_Shift_Del p.T484Rfs*40 0.37 TCGA-XV-AAZW-01 8 145541337 145541337 G A DGAT1 Silent p.F311F 0.36 TCGA-XV-AAZW-01 8 24256446 24256446 G A ADAMDEC1 Silent p.G274G 0.28 TCGA-XV-AAZW-01 8 28928132 28928132 C T KIF13B Silent p.R1790R 0.46 TCGA-XV-AAZW-01 8 54141881 54141881 G A OPRK1 Silent p.I373I 0.52 TCGA-XV-AAZW-01 8 92407373 92407373 A T SLC26A7 3'Flank 0.32 TCGA-XV-AAZW-01 9 107267244 107267244 G A OR13F1 Missense_Mutation p.R234Q 0.68 deleterious(0.05) benign(0.028) TCGA-XV-AAZW-01 9 139943133 139943133 G A ENTPD2 Silent p.S488S 0.62 TCGA-XV-AAZW-01 9 34623548 34623548 C T ARID3C Missense_Mutation p.D247N 0.48 tolerated(0.35) benign(0.001) TCGA-XV-AAZW-01 9 34659854 34659854 C T IL11RA Silent p.T303T 0.48 TCGA-XV-AAZW-01 9 73151305 73151305 G A TRPM3 Missense_Mutation p.A1563V 0.05 tolerated_low_confidence(0.33) benign(0.006) TCGA-XV-AAZW-01 9 77407667 77407667 C T TRPM6 Missense_Mutation p.R804K 0.81 tolerated(0.55) benign(0.005) TCGA-XV-AAZW-01 9 79465476 79465476 C T PRUNE2 Missense_Mutation p.E83K 0.67 deleterious(0) possibly_damaging(0.856) TCGA-XV-AAZW-01 X 101092532 101092532 G A NXF5 Silent p.I338I 0.35 TCGA-XV-AAZW-01 X 101092533 101092533 A G NXF5 Missense_Mutation p.I338T 0.35 deleterious(0) benign(0.119) TCGA-XV-AAZW-01 X 105450086 105450086 C T MUM1L1 Missense_Mutation p.H221Y 0.25 tolerated(0.89) benign(0.001) TCGA-XV-AAZW-01 X 11312922 11312922 T A AMELX Missense_Mutation p.I5N 0.64 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZW-01 X 119243125 119243125 C G RHOXF1 3'UTR 0.43 TCGA-XV-AAZW-01 X 119243126 119243126 C T RHOXF1 3'UTR 0.41 TCGA-XV-AAZW-01 X 130407819 130407819 G A IGSF1 Missense_Mutation p.P1326L 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.826) TCGA-XV-AAZW-01 X 131762476 131762476 C T HS6ST2 Silent p.Q571Q 0.47 TCGA-XV-AAZW-01 X 135430106 135430106 C T GPR112 Missense_Mutation p.S1414L 0.46 deleterious(0) probably_damaging(0.996) TCGA-XV-AAZW-01 X 142596634 142596634 C T SPANXN3 3'UTR 0.59 TCGA-XV-AAZW-01 X 19482383 19482383 G A MAP3K15 Missense_Mutation p.P223S 0.67 tolerated(0.08) benign(0.403) TCGA-XV-AAZW-01 X 3238261 3238261 G C MXRA5 Missense_Mutation p.S1822C 0.67 deleterious(0.01) possibly_damaging(0.784) TCGA-XV-AAZW-01 X 32398771 32398771 C A DMD Missense_Mutation p.E1567D 0.06 possibly_damaging(0.764) TCGA-XV-AAZW-01 X 36116944 36116944 G A CHDC2 Missense_Mutation p.E226K 0.81 deleterious(0) probably_damaging(0.998) TCGA-XV-AAZW-01 X 96204038 96204038 G A DIAPH2 Silent p.Q538Q 0.42 TCGA-XV-AAZW-01 X 99662342 99662342 T C PCDH19 Silent p.Q418Q 0.40 TCGA-XV-AAZY-01 10 104572490 104572490 C T WBP1L Missense_Mutation p.P165L 0.14 tolerated(0.06) benign(0.444) TCGA-XV-AAZY-01 10 105817949 105817949 C T COL17A1 Splice_Site p.X408_splice 0.17 TCGA-XV-AAZY-01 10 50311684 50311684 C T VSTM4 Intron 0.32 TCGA-XV-AAZY-01 10 5040814 5040814 C A AKR1C2 Intron 0.19 TCGA-XV-AAZY-01 10 52067787 52067787 G A SGMS1 Silent p.I339I 0.20 TCGA-XV-AAZY-01 10 55581764 55581764 G A PCDH15 Silent p.L1910L 0.22 TCGA-XV-AAZY-01 10 61802497 61802497 C T ANK3 Silent p.V4362V 0.26 TCGA-XV-AAZY-01 10 61843348 61843348 C T ANK3 Missense_Mutation p.D1368N 0.19 probably_damaging(0.995) TCGA-XV-AAZY-01 10 75897885 75897885 G A AP3M1 Nonsense_Mutation p.R85* 0.23 TCGA-XV-AAZY-01 10 98770808 98770808 C T SLIT1 Missense_Mutation p.G1095R 0.13 deleterious(0) possibly_damaging(0.845) TCGA-XV-AAZY-01 11 108165662 108165662 C T ATM Silent p.N1595N 0.29 TCGA-XV-AAZY-01 11 1095217 1095217 T C MUC2 Missense_Mutation p.S2013P 0.23 unknown(0) TCGA-XV-AAZY-01 11 123777309 123777309 C T OR8D4 Silent p.T57T 0.15 TCGA-XV-AAZY-01 11 18631493 18631493 A C SPTY2D1 Missense_Mutation p.L658R 0.14 deleterious(0) probably_damaging(0.987) TCGA-XV-AAZY-01 11 3115011 3115011 C T OSBPL5 Missense_Mutation p.G592R 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-XV-AAZY-01 11 4967879 4967879 G A OR51A4 Missense_Mutation p.S151F 0.19 tolerated(0.19) benign(0.005) TCGA-XV-AAZY-01 11 49805439 49805439 C T RP11-707M1.1 RNA 0.32 TCGA-XV-AAZY-01 11 55587329 55587329 C T OR5D18 Missense_Mutation p.S75F 0.21 deleterious(0.01) possibly_damaging(0.623) TCGA-XV-AAZY-01 11 55798211 55798211 C T OR5AS1 Missense_Mutation p.S106F 0.28 tolerated(0.42) benign(0.049) TCGA-XV-AAZY-01 11 56310599 56310599 C T OR5M11 Missense_Mutation p.M45I 0.23 tolerated(0.05) benign(0.005) TCGA-XV-AAZY-01 11 56757210 56757210 C T OR5AK2 Silent p.A274A 0.28 TCGA-XV-AAZY-01 11 5758571 5758571 G A OR56B1 Missense_Mutation p.M275I 0.21 deleterious(0.05) benign(0.008) TCGA-XV-AAZY-01 11 66468636 66468636 G T SPTBN2 Silent p.T978T 0.14 TCGA-XV-AAZY-01 11 76924975 76924975 C T MYO7A Missense_Mutation p.T2170I 0.21 deleterious(0) probably_damaging(0.997) TCGA-XV-AAZY-01 12 101493413 101493413 G A ANO4 Silent p.R653R 0.20 TCGA-XV-AAZY-01 12 112374532 112374532 G A TMEM116 Silent p.F184F 0.19 TCGA-XV-AAZY-01 12 129559115 129559115 C T TMEM132D Missense_Mutation p.E869K 0.24 tolerated(0.84) benign(0.022) TCGA-XV-AAZY-01 12 131498881 131498881 G A GPR133 Missense_Mutation p.R490K 0.10 tolerated(0.61) benign(0.001) TCGA-XV-AAZY-01 12 40692991 40692991 C T LRRK2 Missense_Mutation p.S1143F 0.19 tolerated(0.46) benign(0.012) TCGA-XV-AAZY-01 12 4702201 4702201 C T DYRK4 Missense_Mutation p.P51L 0.25 tolerated(0.43) benign(0.001) TCGA-XV-AAZY-01 12 4919558 4919558 C T KCNA6 Silent p.F117F 0.29 TCGA-XV-AAZY-01 12 54367531 54367531 C T HOXC11 Missense_Mutation p.P169L 0.25 tolerated(0.25) possibly_damaging(0.499) TCGA-XV-AAZY-01 12 54367532 54367532 C T HOXC11 Silent p.P169P 0.24 TCGA-XV-AAZY-01 12 55523905 55523905 C T OR9K2 Missense_Mutation p.S118F 0.25 deleterious(0.01) benign(0.404) TCGA-XV-AAZY-01 12 55863721 55863721 C T OR6C70 Missense_Mutation p.E68K 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XV-AAZY-01 12 57575046 57575046 C G LRP1 Missense_Mutation p.S1878R 0.09 possibly_damaging(0.629) TCGA-XV-AAZY-01 12 57595303 57595303 C T LRP1 Nonsense_Mutation p.Q3457* 0.25 TCGA-XV-AAZY-01 12 58006779 58006779 C T ARHGEF25 Missense_Mutation p.P94L 0.22 tolerated_low_confidence(0.33) benign(0.002) TCGA-XV-AAZY-01 12 6882401 6882401 C T LAG3 Silent p.A34A 0.24 TCGA-XV-AAZY-01 12 70986205 70986205 C T PTPRB Missense_Mutation p.G546E 0.26 deleterious(0) probably_damaging(0.927) TCGA-XV-AAZY-01 12 71056345 71056345 C T PTPRR Missense_Mutation p.G513E 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-XV-AAZY-01 12 7633843 7633843 C T CD163 Missense_Mutation p.R1086K 0.16 tolerated(0.19) possibly_damaging(0.622) TCGA-XV-AAZY-01 12 76791541 76791541 G A OSBPL8 Missense_Mutation p.P202L 0.17 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 12 79679683 79679683 G A SYT1 Missense_Mutation p.E95K 0.24 tolerated(1) benign(0.004) TCGA-XV-AAZY-01 12 79813093 79813093 C T SYT1 Intron 0.20 TCGA-XV-AAZY-01 12 9333598 9333598 G A PZP Missense_Mutation p.A607V 0.25 deleterious(0.03) benign(0.115) TCGA-XV-AAZY-01 12 95605042 95605042 C T FGD6 Silent p.E6E 0.20 TCGA-XV-AAZY-01 13 103343201 103343201 C T METTL21C Missense_Mutation p.E82K 0.27 deleterious(0) possibly_damaging(0.755) TCGA-XV-AAZY-01 13 37422800 37422800 T C SMAD9 3'UTR 0.25 TCGA-XV-AAZY-01 13 45517582 45517582 C T NUFIP1 Missense_Mutation p.E456K 0.11 deleterious(0) possibly_damaging(0.663) TCGA-XV-AAZY-01 13 46923441 46923441 C T KIAA0226L Silent p.K537K 0.21 TCGA-XV-AAZY-01 13 84453843 84453843 C T SLITRK1 Silent p.A600A 0.19 TCGA-XV-AAZY-01 14 20010218 20010218 A T POTEM Missense_Mutation p.C314S 0.38 tolerated(0.43) possibly_damaging(0.82) TCGA-XV-AAZY-01 14 21624029 21624029 C T OR5AU1 Missense_Mutation p.M52I 0.32 tolerated(0.1) probably_damaging(0.968) TCGA-XV-AAZY-01 14 25043481 25043481 C T CTSG Silent p.G188G 0.19 TCGA-XV-AAZY-01 14 70634926 70634926 C T SLC8A3 Missense_Mutation p.D72N 0.20 deleterious(0) probably_damaging(0.954) TCGA-XV-AAZY-01 14 71462636 71462636 G A PCNX Missense_Mutation p.E875K 0.15 deleterious(0.01) benign(0.427) TCGA-XV-AAZY-01 14 73538409 73538409 G A RBM25 Silent p.G20G 0.24 TCGA-XV-AAZY-01 14 77722972 77722972 G A TMEM63C Missense_Mutation p.G775E 0.20 tolerated(0.26) benign(0.002) TCGA-XV-AAZY-01 14 80130171 80130171 C T NRXN3 Silent p.S792S 0.24 TCGA-XV-AAZY-01 14 81610211 81610211 G A TSHR Silent p.K603K 0.24 TCGA-XV-AAZY-01 15 33936681 33936681 G A RYR3 Silent p.P1242P 0.21 TCGA-XV-AAZY-01 15 35198772 35198772 T C AQR Missense_Mutation p.D602G 0.26 tolerated(0.1) possibly_damaging(0.728) TCGA-XV-AAZY-01 15 40099452 40099452 G A GPR176 Silent p.F60F 0.23 TCGA-XV-AAZY-01 15 45426421 45426421 A G DUOX1 Missense_Mutation p.N74S 0.15 deleterious(0) benign(0.301) TCGA-XV-AAZY-01 15 51696557 51696557 C T GLDN Missense_Mutation p.S421F 0.30 deleterious(0) probably_damaging(0.998) TCGA-XV-AAZY-01 15 68642977 68642977 C T ITGA11 Silent p.G346G 0.17 TCGA-XV-AAZY-01 15 79307719 79307719 C T RASGRF1 Missense_Mutation p.M592I 0.19 tolerated(0.06) benign(0.155) TCGA-XV-AAZY-01 15 90892365 90892365 C T GABARAPL3 Missense_Mutation p.R22Q 0.12 deleterious(0.03) benign(0.121) TCGA-XV-AAZY-01 15 91795651 91795651 C T SV2B Missense_Mutation p.R229W 0.18 deleterious(0) probably_damaging(0.959) TCGA-XV-AAZY-01 16 15872692 15872692 G A MYH11 Silent p.F252F 0.25 TCGA-XV-AAZY-01 16 18860587 18860587 G A SMG1 Missense_Mutation p.P1859S 0.19 deleterious(0.01) benign(0.123) TCGA-XV-AAZY-01 16 22162065 22162065 G A VWA3A Missense_Mutation p.G1060E 0.25 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZY-01 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.18 TCGA-XV-AAZY-01 16 2814991 2814998 GCTTTGCC - SRRM2 Frame_Shift_Del p.A1488Sfs*4 0.22 TCGA-XV-AAZY-01 16 30017928 30017928 C T DOC2A Missense_Mutation p.E317K 0.16 deleterious(0) possibly_damaging(0.775) TCGA-XV-AAZY-01 16 31088912 31088912 C T ZNF646 Missense_Mutation p.H423Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-XV-AAZY-01 16 46771681 46771681 G A MYLK3 Missense_Mutation p.P315S 0.26 tolerated(0.52) benign(0.01) TCGA-XV-AAZY-01 16 50134187 50134195 ATAGTAGTA - HEATR3 In_Frame_Del p.S550_N552del 0.14 TCGA-XV-AAZY-01 16 57059638 57059638 C T NLRC5 Silent p.F261F 0.24 TCGA-XV-AAZY-01 16 58742059 58742059 C T GOT2 3'UTR 0.19 TCGA-XV-AAZY-01 16 75203771 75203771 C T ZFP1 Missense_Mutation p.L255F 0.11 tolerated(0.15) possibly_damaging(0.845) TCGA-XV-AAZY-01 16 75564174 75564174 G A CHST5 Silent p.L37L 0.35 TCGA-XV-AAZY-01 17 10542768 10542768 G A MYH3 Silent p.L983L 0.22 TCGA-XV-AAZY-01 17 11671886 11671886 C T DNAH9 Silent p.F2429F 0.17 TCGA-XV-AAZY-01 17 26982434 26982434 C T SDF2 Silent p.R73R 0.19 TCGA-XV-AAZY-01 17 28651919 28651919 G A TMIGD1 Silent p.V185V 0.18 TCGA-XV-AAZY-01 17 3119791 3119791 C T OR1A1 Missense_Mutation p.R293W 0.17 deleterious(0.01) benign(0.014) TCGA-XV-AAZY-01 17 37566410 37566410 C T MED1 Silent p.K688K 0.28 TCGA-XV-AAZY-01 17 42828309 42828309 C T DBF4B Silent p.P512P 0.18 TCGA-XV-AAZY-01 17 46973046 46973046 C T ATP5G1 Missense_Mutation p.S109F 0.18 tolerated(0.05) benign(0.068) TCGA-XV-AAZY-01 17 48745100 48745100 G A ABCC3 Nonsense_Mutation p.W539* 0.19 TCGA-XV-AAZY-01 17 54969311 54969311 G A TRIM25 Missense_Mutation p.S548F 0.09 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 17 56329559 56329559 C T LPO Missense_Mutation p.P266L 0.19 deleterious(0) benign(0.098) TCGA-XV-AAZY-01 17 58257963 58257963 G A USP32 Silent p.V1528V 0.20 TCGA-XV-AAZY-01 17 61843499 61843499 C T CCDC47 Missense_Mutation p.V13M 0.12 deleterious(0.04) benign(0.003) TCGA-XV-AAZY-01 17 61950580 61950580 G A CSH2 Missense_Mutation p.H44Y 0.14 tolerated(0.11) benign(0.043) TCGA-XV-AAZY-01 17 76200760 76200760 T C AFMID Missense_Mutation p.V111A 0.08 tolerated(0.85) benign(0.163) TCGA-XV-AAZY-01 17 9850217 9850217 G A GAS7 Silent p.Y203Y 0.15 TCGA-XV-AAZY-01 18 30977129 30977129 C T CCDC178 Nonsense_Mutation p.W34* 0.07 TCGA-XV-AAZY-01 18 31463253 31463253 C T NOL4 Missense_Mutation p.G560R 0.17 tolerated(0.05) possibly_damaging(0.522) TCGA-XV-AAZY-01 18 46645176 46645176 C T DYM Missense_Mutation p.D562N 0.16 tolerated(0.21) possibly_damaging(0.588) TCGA-XV-AAZY-01 18 905487 905487 C T ADCYAP1 Missense_Mutation p.P34S 0.10 deleterious(0.01) benign(0.253) TCGA-XV-AAZY-01 18 905488 905488 C T ADCYAP1 Missense_Mutation p.P34L 0.10 deleterious(0) probably_damaging(0.928) TCGA-XV-AAZY-01 19 16860587 16860587 G A NWD1 Missense_Mutation p.M378I 0.31 tolerated(0.2) benign(0.038) TCGA-XV-AAZY-01 19 19822638 19822638 G A ZNF14 Silent p.F484F 0.24 TCGA-XV-AAZY-01 19 41778117 41778117 C T HNRNPUL1 Silent p.Y183Y 0.25 TCGA-XV-AAZY-01 19 54257322 54257322 G A MIR527 RNA 0.23 TCGA-XV-AAZY-01 19 55602861 55602861 G A PPP1R12C Silent p.V776V 0.15 TCGA-XV-AAZY-01 19 9069045 9069045 G A MUC16 Missense_Mutation p.S6134L 0.21 unknown(0) TCGA-XV-AAZY-01 19 9088792 9088792 G A MUC16 Missense_Mutation p.S1008F 0.30 unknown(0) TCGA-XV-AAZY-01 1 100964781 100964781 C T CDC14A Missense_Mutation p.S573F 0.33 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-XV-AAZY-01 1 109191501 109191501 C T HENMT1 Missense_Mutation p.R290Q 0.48 tolerated(0.36) benign(0) TCGA-XV-AAZY-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.47 tolerated(0.06) benign(0.006) TCGA-XV-AAZY-01 1 14106182 14106182 G A PRDM2 Missense_Mutation p.S631N 0.07 benign(0.074) TCGA-XV-AAZY-01 1 151787506 151787506 G A RORC Missense_Mutation p.R232C 0.41 deleterious(0.03) benign(0.339) TCGA-XV-AAZY-01 1 152800014 152800014 C T LCE1A Silent p.P22P 0.49 TCGA-XV-AAZY-01 1 154029315 154029315 G T NUP210L Nonsense_Mutation p.Y1072* 0.39 TCGA-XV-AAZY-01 1 155707950 155707950 C T DAP3 Missense_Mutation p.P372S 0.44 tolerated(0.48) benign(0.001) TCGA-XV-AAZY-01 1 155724228 155724228 C T GON4L Missense_Mutation p.G1857R 0.31 deleterious(0) probably_damaging(0.979) TCGA-XV-AAZY-01 1 176564294 176564294 C T PAPPA2 Silent p.P518P 0.32 TCGA-XV-AAZY-01 1 181740502 181740502 C T CACNA1E Missense_Mutation p.S1652F 0.29 deleterious(0) possibly_damaging(0.788) TCGA-XV-AAZY-01 1 214171584 214171584 C T PROX1 Missense_Mutation p.S569L 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-XV-AAZY-01 1 215342618 215342618 C T KCNK2 Silent p.L184L 0.49 TCGA-XV-AAZY-01 1 45291984 45291984 G A PTCH2 Missense_Mutation p.P1018S 0.47 deleterious(0.03) probably_damaging(1) TCGA-XV-AAZY-01 1 78177381 78177381 T A USP33 Intron 0.09 TCGA-XV-AAZY-01 20 34572022 34572022 C T CNBD2 Missense_Mutation p.P176S 0.43 deleterious(0.04) benign(0.373) TCGA-XV-AAZY-01 20 34572023 34572023 C T CNBD2 Missense_Mutation p.P176L 0.45 tolerated(0.11) benign(0.105) TCGA-XV-AAZY-01 20 42635232 42635232 C T TOX2 Missense_Mutation p.P71S 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-XV-AAZY-01 20 44171498 44171498 C T EPPIN Missense_Mutation p.E78K 0.23 tolerated(0.39) benign(0.018) TCGA-XV-AAZY-01 21 11039385 11039385 C T BAGE2 RNA 0.04 TCGA-XV-AAZY-01 21 38868426 38868426 C T DYRK1A Nonsense_Mutation p.Q369* 0.27 TCGA-XV-AAZY-01 21 40781979 40781979 G T LCA5L Missense_Mutation p.T403N 0.22 tolerated(0.68) benign(0.067) TCGA-XV-AAZY-01 21 44515638 44515638 A G U2AF1 Silent p.F86F 0.15 TCGA-XV-AAZY-01 21 46021557 46021557 C T KRTAP10-7 Missense_Mutation p.R346C 0.25 deleterious(0.04) unknown(0) TCGA-XV-AAZY-01 22 16279248 16279248 C T POTEH Silent p.V325V 0.05 TCGA-XV-AAZY-01 22 24837367 24837367 G A ADORA2A Silent p.V383V 0.19 TCGA-XV-AAZY-01 22 31679182 31679182 G A PIK3IP1 Missense_Mutation p.T227I 0.22 deleterious(0) possibly_damaging(0.478) TCGA-XV-AAZY-01 2 100182032 100182032 G A AFF3 Silent p.I1037I 0.22 TCGA-XV-AAZY-01 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.15 benign(0.002) TCGA-XV-AAZY-01 2 108496456 108496456 G A RGPD4 Missense_Mutation p.E1653K 0.23 deleterious_low_confidence(0.05) benign(0.027) TCGA-XV-AAZY-01 2 112785979 112785979 C T MERTK Silent p.T846T 0.28 TCGA-XV-AAZY-01 2 113786608 113786608 C T IL36B Missense_Mutation p.E57K 0.19 tolerated_low_confidence(0.94) benign(0.009) TCGA-XV-AAZY-01 2 136872450 136872450 G A CXCR4 Missense_Mutation p.H354Y 0.29 tolerated_low_confidence(0.09) unknown(0) TCGA-XV-AAZY-01 2 176948543 176948543 C T EVX2 5'UTR 0.21 TCGA-XV-AAZY-01 2 179598590 179598590 C T TTN Missense_Mutation p.D5176N 0.26 TCGA-XV-AAZY-01 2 186673797 186673797 G A FSIP2 Silent p.K6677K 0.20 TCGA-XV-AAZY-01 2 196545451 196545451 C T SLC39A10 Missense_Mutation p.P229S 0.23 tolerated(0.72) benign(0.005) TCGA-XV-AAZY-01 2 207169567 207169567 G A ZDBF2 Silent p.E105E 0.26 TCGA-XV-AAZY-01 2 208986476 208986476 C T CRYGD Missense_Mutation p.G149E 0.17 deleterious(0) probably_damaging(0.986) TCGA-XV-AAZY-01 2 21232411 21232411 G A APOB Silent p.I2443I 0.22 TCGA-XV-AAZY-01 2 220379884 220379884 C T ASIC4 Silent p.D273D 0.16 TCGA-XV-AAZY-01 2 238268021 238268021 C T COL6A3 Missense_Mutation p.G2098E 0.30 probably_damaging(1) TCGA-XV-AAZY-01 2 24974859 24974859 C T NCOA1 Missense_Mutation p.P1239S 0.14 tolerated(0.27) benign(0.004) TCGA-XV-AAZY-01 2 27802366 27802366 G A C2orf16 Missense_Mutation p.R976K 0.18 tolerated(0.33) benign(0.262) TCGA-XV-AAZY-01 2 80772151 80772151 G A CTNNA2 Silent p.V445V 0.12 TCGA-XV-AAZY-01 2 96457948 96457948 C T AC008268.2 RNA 0.20 TCGA-XV-AAZY-01 3 112642408 112642408 G A CD200R1 3'UTR 0.36 TCGA-XV-AAZY-01 3 119134867 119134867 C T ARHGAP31 Missense_Mutation p.S1364F 0.12 deleterious(0) possibly_damaging(0.665) TCGA-XV-AAZY-01 3 150387227 150387227 C T FAM194A Missense_Mutation p.G452E 0.26 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 3 164714392 164714392 G A SI Silent p.L1541L 0.25 TCGA-XV-AAZY-01 3 167240194 167240194 C T WDR49 Missense_Mutation p.E543K 0.18 tolerated(0.12) benign(0.014) TCGA-XV-AAZY-01 3 184005699 184005699 C T ECE2 Silent p.F564F 0.27 TCGA-XV-AAZY-01 3 186274255 186274255 G A TBCCD1 Missense_Mutation p.P268S 0.24 deleterious(0.03) possibly_damaging(0.458) TCGA-XV-AAZY-01 3 25216036 25216036 C T AC133680.1 3'Flank 0.27 TCGA-XV-AAZY-01 3 31725517 31725517 G A OSBPL10 Silent p.I445I 0.24 TCGA-XV-AAZY-01 3 43122923 43122923 T A POMGNT2 Translation_Start_Site p.M1? 0.54 tolerated_low_confidence(0.07) unknown(0) TCGA-XV-AAZY-01 3 48419867 48419867 C T FBXW12 Missense_Mutation p.P156S 0.23 deleterious(0) possibly_damaging(0.857) TCGA-XV-AAZY-01 3 48604372 48604372 G A COL7A1 Missense_Mutation p.P2732S 0.27 probably_damaging(0.942) TCGA-XV-AAZY-01 3 51864511 51864511 G A IQCF3 Silent p.L53L 0.14 TCGA-XV-AAZY-01 3 57107919 57107919 C T SPATA12 Missense_Mutation p.A66V 0.27 tolerated_low_confidence(0.14) possibly_damaging(0.682) TCGA-XV-AAZY-01 4 103822388 103822388 C T SLC9B1 Silent p.L478L 0.04 TCGA-XV-AAZY-01 4 113508551 113508551 G A C4orf21 Missense_Mutation p.S1221L 0.23 tolerated(1) benign(0.001) TCGA-XV-AAZY-01 4 115891739 115891739 C T NDST4 Silent p.G356G 0.22 TCGA-XV-AAZY-01 4 16077518 16077518 T C PROM1 Silent p.V4V 0.23 TCGA-XV-AAZY-01 4 166418720 166418720 G A CPE Silent p.L463L 0.19 TCGA-XV-AAZY-01 4 166418734 166418734 A G CPE Missense_Mutation p.K468R 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-XV-AAZY-01 4 6865434 6865434 C T KIAA0232 Missense_Mutation p.R1109C 0.19 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZY-01 4 90171269 90171269 C T GPRIN3 5'UTR 0.14 TCGA-XV-AAZY-01 5 131545982 131545982 G A P4HA2 Missense_Mutation p.S235F 0.31 deleterious(0.02) benign(0.121) TCGA-XV-AAZY-01 5 13911539 13911539 C T DNAH5 Missense_Mutation p.D534N 0.20 possibly_damaging(0.822) TCGA-XV-AAZY-01 5 140870051 140870051 A T PCDHGC5 Missense_Mutation p.E415V 0.33 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZY-01 5 140870052 140870052 G A PCDHGC5 Silent p.E415E 0.34 TCGA-XV-AAZY-01 5 141004874 141004874 G A HDAC3 Missense_Mutation p.P373L 0.21 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 5 147796566 147796566 C T FBXO38 Nonsense_Mutation p.R473* 0.18 TCGA-XV-AAZY-01 5 172744888 172744888 C T STC2 Missense_Mutation p.E291K 0.28 deleterious_low_confidence(0.03) benign(0.293) TCGA-XV-AAZY-01 5 23521241 23521241 C T PRDM9 Missense_Mutation p.P154L 0.34 tolerated_low_confidence(0.16) benign(0.009) TCGA-XV-AAZY-01 5 24505351 24505351 G A CDH10 Silent p.S421S 0.14 TCGA-XV-AAZY-01 5 79815521 79815521 T G FAM151B Silent p.V109V 0.09 TCGA-XV-AAZY-01 5 94782293 94782293 C G FAM81B Nonsense_Mutation p.Y307* 0.33 TCGA-XV-AAZY-01 6 108222603 108222603 G A SEC63 Missense_Mutation p.P443L 0.19 deleterious(0) probably_damaging(0.998) TCGA-XV-AAZY-01 6 108222604 108222604 G A SEC63 Missense_Mutation p.P443S 0.19 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 6 117244318 117244318 C T RFX6 Silent p.L496L 0.24 TCGA-XV-AAZY-01 6 130762176 130762176 G A TMEM200A Silent p.S203S 0.30 TCGA-XV-AAZY-01 6 22290534 22290534 C T PRL Missense_Mutation p.E121K 0.22 deleterious(0.01) benign(0.197) TCGA-XV-AAZY-01 6 29637983 29637983 G A MOG Intron 0.30 TCGA-XV-AAZY-01 6 31540582 31540582 T G LTA Silent p.L21L 0.13 TCGA-XV-AAZY-01 6 31557699 31557699 G A NCR3 Missense_Mutation p.S83F 0.24 tolerated(0.1) benign(0.058) TCGA-XV-AAZY-01 6 32015768 32015768 G A TNXB 5'Flank 0.26 TCGA-XV-AAZY-01 6 32053611 32053611 G A TNXB Missense_Mutation p.P1022S 0.31 probably_damaging(0.996) TCGA-XV-AAZY-01 6 41011826 41011826 G A TSPO2 Missense_Mutation p.D155N 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-XV-AAZY-01 6 70890205 70890205 G A COL19A1 Missense_Mutation p.G890E 0.11 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 6 86224251 86224251 C T SNX14 Missense_Mutation p.G789R 0.21 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 7 107669641 107669641 C T LAMB4 Missense_Mutation p.E1665K 0.20 tolerated(0.34) benign(0.01) TCGA-XV-AAZY-01 7 112535776 112535776 G A C7orf60 Silent p.F107F 0.27 TCGA-XV-AAZY-01 7 116918120 116918120 C T WNT2 3'UTR 0.17 TCGA-XV-AAZY-01 7 137263039 137263039 G A DGKI Nonsense_Mutation p.R559* 0.08 TCGA-XV-AAZY-01 7 142649596 142649596 C T KEL Missense_Mutation p.M401I 0.20 tolerated(0.47) benign(0.034) TCGA-XV-AAZY-01 7 142919701 142919701 C T TAS2R40 Missense_Mutation p.S177F 0.17 tolerated(0.85) benign(0.049) TCGA-XV-AAZY-01 7 143807294 143807294 G A OR2A2 Missense_Mutation p.V207I 0.20 tolerated(0.07) benign(0.181) TCGA-XV-AAZY-01 7 148709376 148709376 G A PDIA4 Missense_Mutation p.P231S 0.31 tolerated(0.1) benign(0.128) TCGA-XV-AAZY-01 7 31016068 31016068 C T GHRHR Silent p.F333F 0.24 TCGA-XV-AAZY-01 7 35051041 35051041 G A DPY19L1 Missense_Mutation p.R118W 0.22 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 7 72657705 72657705 C T GTF2IRD2P1 RNA 0.18 TCGA-XV-AAZY-01 7 93067557 93067557 G A CALCR Silent p.I310I 0.24 TCGA-XV-AAZY-01 7 99754047 99754047 G A C7orf43 Missense_Mutation p.A401V 0.29 deleterious(0.01) possibly_damaging(0.866) TCGA-XV-AAZY-01 8 110509440 110509440 C T PKHD1L1 Missense_Mutation p.P3513L 0.32 deleterious(0.01) benign(0.165) TCGA-XV-AAZY-01 8 24357724 24357724 G A ADAM7 Missense_Mutation p.E653K 0.24 deleterious(0.01) benign(0.063) TCGA-XV-AAZY-01 9 117853144 117853144 G A TNC Missense_Mutation p.H52Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-XV-AAZY-01 9 21141387 21141387 G A IFNW1 Silent p.F61F 0.26 TCGA-XV-AAZY-01 9 74860069 74860069 G A GDA Missense_Mutation p.G381R 0.28 deleterious(0) probably_damaging(0.973) TCGA-XV-AAZY-01 X 105281140 105281140 A T SERPINA7 5'UTR 0.18 TCGA-XV-AAZY-01 X 120181926 120181926 G A GLUD2 Missense_Mutation p.E130K 0.16 tolerated(0.1) possibly_damaging(0.449) TCGA-XV-AAZY-01 X 129518607 129518607 G A GPR119 Missense_Mutation p.S272F 0.18 deleterious(0) probably_damaging(1) TCGA-XV-AAZY-01 X 136651187 136651187 C T ZIC3 Missense_Mutation p.S396F 0.20 deleterious(0) probably_damaging(0.998) TCGA-XV-AAZY-01 X 140270979 140270979 G A LDOC1 Silent p.L76L 0.27 TCGA-XV-AAZY-01 X 141291814 141291814 G A MAGEC2 5'UTR 0.19 TCGA-XV-AAZY-01 X 142795185 142795185 C T SPANXN2 Missense_Mutation p.E165K 0.21 tolerated(0.06) unknown(0) TCGA-XV-AAZY-01 X 148568612 148568612 G A IDS Missense_Mutation p.H131Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-XV-AAZY-01 X 153006169 153006169 G A ABCD1 Silent p.E592E 0.39 TCGA-XV-AAZY-01 X 153178214 153178214 G A ARHGAP4 Silent p.P534P 0.19 TCGA-XV-AAZY-01 X 153579989 153579989 G A FLNA Missense_Mutation p.P2328L 0.32 tolerated(0.43) benign(0) TCGA-XV-AAZY-01 X 155004140 155004140 G A SPRY3 Missense_Mutation p.E203K 0.18 deleterious(0.02) possibly_damaging(0.775) TCGA-XV-AAZY-01 X 18911738 18911738 G A PHKA2 Silent p.D1191D 0.18 TCGA-XV-AAZY-01 X 2407408 2407408 G A ZBED1 Silent p.I451I 0.27 TCGA-XV-AAZY-01 X 37300992 37300992 C T PRRG1 Intron 0.23 TCGA-XV-AAZY-01 X 48775820 48775820 C T PIM2 Missense_Mutation p.R55Q 0.18 tolerated(0.08) benign(0.015) TCGA-XV-AAZY-01 X 63563500 63563500 G A MTMR8 Silent p.F322F 0.18 TCGA-XV-AAZY-01 X 70362080 70362080 G A MED12 3'UTR 0.17 TCGA-XV-AAZY-01 X 71915598 71915598 G A PHKA1 Silent p.T138T 0.23 TCGA-XV-AAZY-01 X 78216444 78216444 G A P2RY10 Missense_Mutation p.D143N 0.28 tolerated(0.4) benign(0.002) TCGA-YD-A89C-06 10 101590171 101590171 C T ABCC2 Missense_Mutation p.R910C 0.41 tolerated(0.05) possibly_damaging(0.656) TCGA-YD-A89C-06 10 102269144 102269144 T C SEC31B Missense_Mutation p.K110E 0.38 tolerated(0.33) benign(0.009) TCGA-YD-A89C-06 10 102689627 102689627 C T FAM178A Missense_Mutation p.P736S 0.37 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 10 104377123 104377123 G A SUFU Missense_Mutation p.G412R 0.44 tolerated(0.19) benign(0.019) TCGA-YD-A89C-06 10 104416735 104416735 C T TRIM8 Missense_Mutation p.A427V 0.42 deleterious_low_confidence(0.02) benign(0.092) TCGA-YD-A89C-06 10 104416736 104416736 C T TRIM8 Silent p.A427A 0.41 TCGA-YD-A89C-06 10 105187093 105187093 C T PDCD11 Missense_Mutation p.P1105S 0.26 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 10 105800118 105800118 C T COL17A1 Missense_Mutation p.G918R 0.26 probably_damaging(0.997) TCGA-YD-A89C-06 10 105811927 105811927 G A COL17A1 Missense_Mutation p.S663F 0.36 unknown(0) TCGA-YD-A89C-06 10 105882759 105882759 C T SFR1 Missense_Mutation p.P17L 0.32 deleterious(0.02) benign(0.027) TCGA-YD-A89C-06 10 108437080 108437080 C T SORCS1 Missense_Mutation p.R608Q 0.41 deleterious(0) probably_damaging(0.935) TCGA-YD-A89C-06 10 112839122 112839122 C T ADRA2A Silent p.L456L 0.40 TCGA-YD-A89C-06 10 115885748 115885748 G A C10orf118 Missense_Mutation p.S837F 0.36 deleterious(0) probably_damaging(0.99) TCGA-YD-A89C-06 10 116059145 116059145 C T AFAP1L2 Missense_Mutation p.A663T 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-YD-A89C-06 10 118380835 118380835 C T PNLIPRP2 Silent p.T6T 0.38 TCGA-YD-A89C-06 10 121207763 121207763 C T GRK5 Silent p.F465F 0.42 TCGA-YD-A89C-06 10 12130993 12130993 C T DHTKD1 Silent p.F242F 0.40 TCGA-YD-A89C-06 10 122273422 122273422 G A PPAPDC1A Splice_Site p.X56_splice 0.30 TCGA-YD-A89C-06 10 124034592 124034592 C T BTBD16 5'UTR 0.44 TCGA-YD-A89C-06 10 124057289 124057289 G A BTBD16 Silent p.V199V 0.42 TCGA-YD-A89C-06 10 124066753 124066753 G A BTBD16 Missense_Mutation p.V281I 0.34 tolerated(0.09) possibly_damaging(0.848) TCGA-YD-A89C-06 10 124392765 124392765 C T DMBT1 Silent p.F2023F 0.33 TCGA-YD-A89C-06 10 124396729 124396729 C T DMBT1 Silent p.V2152V 0.33 TCGA-YD-A89C-06 10 124457366 124457366 C T C10orf120 Missense_Mutation p.M297I 0.41 deleterious(0.01) benign(0.225) TCGA-YD-A89C-06 10 124596401 124596401 A T CUZD1 Missense_Mutation p.Y255N 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A89C-06 10 124598737 124598737 C T CUZD1 Missense_Mutation p.D82N 0.42 tolerated(0.99) benign(0.015) TCGA-YD-A89C-06 10 125426255 125426255 C T GPR26 Missense_Mutation p.P111L 0.31 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 10 127753522 127753522 G A ADAM12 Missense_Mutation p.L491F 0.26 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 10 127753523 127753523 G A ADAM12 Silent p.D490D 0.26 TCGA-YD-A89C-06 10 12866498 12866498 C T CAMK1D Missense_Mutation p.H290Y 0.32 tolerated(0.36) benign(0.127) TCGA-YD-A89C-06 10 12870801 12870801 C T CAMK1D Missense_Mutation p.S358F 0.46 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-YD-A89C-06 10 129350932 129350932 A T NPS 3'UTR 0.43 TCGA-YD-A89C-06 10 129537155 129537155 C T FOXI2 Missense_Mutation p.P295S 0.60 tolerated(0.63) benign(0.009) TCGA-YD-A89C-06 10 129911827 129911827 G A MKI67 Missense_Mutation p.S507F 0.34 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 10 135209732 135209732 C T RP11-108K14.8 Silent p.V86V 0.40 TCGA-YD-A89C-06 10 13701380 13701380 C T FRMD4A Missense_Mutation p.S670N 0.05 deleterious(0) benign(0.099) TCGA-YD-A89C-06 10 15256170 15256170 C T FAM171A1 Missense_Mutation p.E473K 0.41 deleterious(0.02) possibly_damaging(0.594) TCGA-YD-A89C-06 10 17201194 17201194 A C TRDMT1 Missense_Mutation p.L165R 0.49 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 10 21097555 21097555 C T NEBL Missense_Mutation p.R882Q 0.39 tolerated(0.52) benign(0.006) TCGA-YD-A89C-06 10 24834954 24834954 G A KIAA1217 Missense_Mutation p.G1845R 0.29 tolerated(0.13) probably_damaging(0.998) TCGA-YD-A89C-06 10 26310455 26310455 G A MYO3A Silent p.L203L 0.44 TCGA-YD-A89C-06 10 27702556 27702556 G A PTCHD3 Silent p.F208F 0.32 TCGA-YD-A89C-06 10 27702882 27702882 C T PTCHD3 Missense_Mutation p.E100K 0.31 tolerated(0.43) possibly_damaging(0.486) TCGA-YD-A89C-06 10 27702933 27702933 C T PTCHD3 Missense_Mutation p.D83N 0.27 tolerated(0.5) benign(0) TCGA-YD-A89C-06 10 27964475 27964475 C T MKX Missense_Mutation p.E283K 0.40 tolerated(0.27) benign(0.03) TCGA-YD-A89C-06 10 28250518 28250518 C T ARMC4 Silent p.Q455Q 0.38 TCGA-YD-A89C-06 10 28283937 28283937 A T ARMC4 Missense_Mutation p.H45Q 0.28 deleterious(0) possibly_damaging(0.61) TCGA-YD-A89C-06 10 3145979 3145979 G A PFKP Missense_Mutation p.D155N 0.22 tolerated(0.09) benign(0.003) TCGA-YD-A89C-06 10 34688290 34688290 G A PARD3 Silent p.I286I 0.25 TCGA-YD-A89C-06 10 43695629 43695629 C T RASGEF1A Splice_Site p.X252_splice 0.27 TCGA-YD-A89C-06 10 46961978 46961978 C T SYT15 Missense_Mutation p.E420K 0.23 deleterious_low_confidence(0.05) benign(0.129) TCGA-YD-A89C-06 10 48429201 48429201 C A GDF10 Nonsense_Mutation p.E229* 0.43 TCGA-YD-A89C-06 10 50684306 50684306 G A ERCC6 Silent p.F779F 0.31 TCGA-YD-A89C-06 10 50863186 50863186 C T CHAT Silent p.R560R 0.41 TCGA-YD-A89C-06 10 51768473 51768473 T A AGAP6 Silent p.V196V 0.21 TCGA-YD-A89C-06 10 51769190 51769190 C T AGAP6 Silent p.V435V 0.44 TCGA-YD-A89C-06 10 5204902 5204902 G A AKR1CL1 Nonsense_Mutation p.Q59* 0.33 TCGA-YD-A89C-06 10 52588055 52588055 C T A1CF Missense_Mutation p.G210E 0.34 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 10 53458232 53458232 G A CSTF2T Nonsense_Mutation p.Q360* 0.29 TCGA-YD-A89C-06 10 55569049 55569049 G A PCDH15 Silent p.D521D 0.43 TCGA-YD-A89C-06 10 55600167 55600167 G A PCDH15 Missense_Mutation p.S1299F 0.45 deleterious(0.02) probably_damaging(0.947) TCGA-YD-A89C-06 10 55663086 55663086 G A PCDH15 Missense_Mutation p.H1140Y 0.32 deleterious(0) probably_damaging(0.982) TCGA-YD-A89C-06 10 55826581 55826581 G A PCDH15 Missense_Mutation p.P719L 0.37 tolerated(0.31) benign(0.009) TCGA-YD-A89C-06 10 6002404 6002404 G A IL15RA Missense_Mutation p.S170F 0.34 deleterious(0.02) probably_damaging(0.989) TCGA-YD-A89C-06 10 61414210 61414210 G A SLC16A9 Nonsense_Mutation p.Q192* 0.41 TCGA-YD-A89C-06 10 61832714 61832714 G A ANK3 Missense_Mutation p.S2642F 0.40 benign(0.023) TCGA-YD-A89C-06 10 61958222 61958222 C A ANK3 Missense_Mutation p.G522V 0.24 probably_damaging(0.964) TCGA-YD-A89C-06 10 64977027 64977027 A T JMJD1C Missense_Mutation p.F206L 0.32 tolerated(0.23) possibly_damaging(0.886) TCGA-YD-A89C-06 10 69918371 69918371 G A MYPN Silent p.R482R 0.34 TCGA-YD-A89C-06 10 70450704 70450704 C T TET1 Silent p.F1848F 0.42 TCGA-YD-A89C-06 10 70644842 70644842 G A STOX1 Silent p.R430R 0.34 TCGA-YD-A89C-06 10 70644843 70644843 G A STOX1 Missense_Mutation p.D431N 0.35 tolerated(0.12) benign(0.01) TCGA-YD-A89C-06 10 71124645 71124645 C T HK1 Missense_Mutation p.S165F 0.30 deleterious(0) possibly_damaging(0.775) TCGA-YD-A89C-06 10 73562968 73562968 G A CDH23 Missense_Mutation p.A315T 0.61 tolerated(0.12) benign(0.247) TCGA-YD-A89C-06 10 77159050 77159050 G A ZNF503 Silent p.Y466Y 0.41 TCGA-YD-A89C-06 10 79616540 79616540 C T DLG5 Missense_Mutation p.E162K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A89C-06 10 81056326 81056326 C T ZMIZ1 Silent p.P443P 0.44 TCGA-YD-A89C-06 10 81697616 81697616 C T SFTPD Missense_Mutation p.E374K 0.34 deleterious(0) probably_damaging(0.957) TCGA-YD-A89C-06 10 87406983 87406983 G A GRID1 Silent p.S723S 0.41 TCGA-YD-A89C-06 10 87628887 87628887 C T GRID1 Silent p.R277R 0.38 TCGA-YD-A89C-06 10 88414489 88414489 C T OPN4 5'UTR 0.35 TCGA-YD-A89C-06 10 88416962 88416962 C T OPN4 Missense_Mutation p.R101C 0.39 deleterious_low_confidence(0.04) benign(0.002) TCGA-YD-A89C-06 10 90966352 90966352 T C CH25H Missense_Mutation p.Y233C 0.46 tolerated(0.09) benign(0.29) TCGA-YD-A89C-06 10 91200905 91200905 C T SLC16A12 Silent p.T136T 0.37 TCGA-YD-A89C-06 10 95275281 95275281 C T CEP55 Silent p.L216L 0.33 TCGA-YD-A89C-06 10 95353776 95353776 G A RBP4 Silent p.I124I 0.30 TCGA-YD-A89C-06 10 95791707 95791707 G A PLCE1 Missense_Mutation p.D302N 0.31 tolerated_low_confidence(0.09) benign(0.004) TCGA-YD-A89C-06 10 97983599 97983599 C T BLNK Missense_Mutation p.G170S 0.33 tolerated(0.46) benign(0.044) TCGA-YD-A89C-06 10 98127784 98127784 T C TLL2 3'UTR 0.25 TCGA-YD-A89C-06 10 98803138 98803138 G A SLIT1 Silent p.S662S 0.29 TCGA-YD-A89C-06 10 99330326 99330326 C T UBTD1 3'UTR 0.40 TCGA-YD-A89C-06 11 100226890 100226890 C T CNTN5 Missense_Mutation p.S1081F 0.41 tolerated(0.34) possibly_damaging(0.866) TCGA-YD-A89C-06 11 100909862 100909862 G A PGR Silent p.L929L 0.35 TCGA-YD-A89C-06 11 102649364 102649364 C T MMP10 Missense_Mutation p.D205N 0.39 tolerated(0.23) possibly_damaging(0.521) TCGA-YD-A89C-06 11 103194620 103194620 C T DYNC2H1 Missense_Mutation p.R3988C 0.26 benign(0.013) TCGA-YD-A89C-06 11 108381927 108381927 C T EXPH5 Missense_Mutation p.G1436E 0.35 tolerated(1) benign(0.008) TCGA-YD-A89C-06 11 108382044 108382044 G A EXPH5 Missense_Mutation p.S1397L 0.36 tolerated(0.11) benign(0.005) TCGA-YD-A89C-06 11 110451888 110451888 C T ARHGAP20 Silent p.E594E 0.24 TCGA-YD-A89C-06 11 111338318 111338318 C T BTG4 3'UTR 0.50 TCGA-YD-A89C-06 11 113076880 113076880 G A NCAM1 Silent p.K261K 0.35 TCGA-YD-A89C-06 11 113131022 113131022 C T NCAM1 Missense_Mutation p.S752L 0.43 tolerated(0.1) benign(0.018) TCGA-YD-A89C-06 11 113269959 113269959 G A ANKK1 Missense_Mutation p.R423Q 0.19 tolerated(0.18) benign(0) TCGA-YD-A89C-06 11 113286145 113286145 T C DRD2 Missense_Mutation p.K241E 0.32 tolerated(0.14) benign(0.14) TCGA-YD-A89C-06 11 113813898 113813898 G A HTR3B Silent p.G297G 0.32 TCGA-YD-A89C-06 11 113860345 113860345 G A HTR3A Missense_Mutation p.D471N 0.27 deleterious(0) possibly_damaging(0.894) TCGA-YD-A89C-06 11 1162207 1162207 G A MUC5AC Silent p.G572G 0.44 TCGA-YD-A89C-06 11 116692155 116692155 C T APOA4 Missense_Mutation p.E207K 0.33 tolerated(0.09) benign(0.342) TCGA-YD-A89C-06 11 117352750 117352750 G A DSCAML1 Silent p.I889I 0.37 TCGA-YD-A89C-06 11 118919783 118919783 G A HYOU1 Missense_Mutation p.P647S 0.36 tolerated(0.42) benign(0.001) TCGA-YD-A89C-06 11 119244150 119244150 G A USP2 Missense_Mutation p.S14L 0.38 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-YD-A89C-06 11 120702560 120702560 G A GRIK4 Splice_Site p.X171_splice 0.32 TCGA-YD-A89C-06 11 120983905 120983905 G A TECTA Missense_Mutation p.G204E 0.22 deleterious(0) probably_damaging(0.985) TCGA-YD-A89C-06 11 121391543 121391543 G A SORL1 Silent p.E463E 0.38 TCGA-YD-A89C-06 11 121430231 121430231 G A SORL1 Missense_Mutation p.E972K 0.34 tolerated(0.1) benign(0.201) TCGA-YD-A89C-06 11 121477933 121477933 C T SORL1 Silent p.S1700S 0.33 TCGA-YD-A89C-06 11 121495883 121495883 G A SORL1 Silent p.L2087L 0.42 TCGA-YD-A89C-06 11 122722437 122722437 C T CRTAM Missense_Mutation p.S77L 0.36 deleterious(0) probably_damaging(0.975) TCGA-YD-A89C-06 11 122775141 122775141 C T C11orf63 Missense_Mutation p.H285Y 0.35 tolerated(0.1) benign(0.011) TCGA-YD-A89C-06 11 123676942 123676942 C T OR6M1 Missense_Mutation p.G39E 0.30 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 11 123814281 123814281 C T OR6T1 Missense_Mutation p.D89N 0.26 tolerated(0.65) benign(0.001) TCGA-YD-A89C-06 11 123814285 123814285 C T OR6T1 Silent p.T87T 0.22 TCGA-YD-A89C-06 11 123886419 123886419 G A OR10G4 Silent p.V46V 0.34 TCGA-YD-A89C-06 11 123994504 123994504 C T VWA5A Missense_Mutation p.P386L 0.20 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 11 124007869 124007869 C T VWA5A Silent p.I591I 0.38 TCGA-YD-A89C-06 11 124007909 124007909 C T VWA5A Missense_Mutation p.H605Y 0.44 tolerated(0.45) benign(0.003) TCGA-YD-A89C-06 11 124135745 124135745 G A OR8G5 Silent p.G341G 0.31 TCGA-YD-A89C-06 11 124310688 124310688 C T OR8B8 Missense_Mutation p.M98I 0.32 deleterious_low_confidence(0.02) benign(0.008) TCGA-YD-A89C-06 11 125647335 125647335 C T PATE2 Missense_Mutation p.R95K 0.33 tolerated(0.14) benign(0.203) TCGA-YD-A89C-06 11 1271125 1271125 G A MUC5B Missense_Mutation p.E4339K 0.32 benign(0.003) TCGA-YD-A89C-06 11 128709614 128709614 G A KCNJ1 Silent p.F194F 0.44 TCGA-YD-A89C-06 11 128840415 128840415 G A ARHGAP32 Missense_Mutation p.P1551S 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.765) TCGA-YD-A89C-06 11 129724712 129724712 G A TMEM45B Splice_Site p.X129_splice 0.47 TCGA-YD-A89C-06 11 129801063 129801063 G A PRDM10 Missense_Mutation p.P460S 0.35 tolerated(0.18) benign(0.012) TCGA-YD-A89C-06 11 13514129 13514129 C T PTH Silent p.K57K 0.36 TCGA-YD-A89C-06 11 16872806 16872806 G A PLEKHA7 Missense_Mutation p.P210S 0.40 tolerated(0.07) possibly_damaging(0.863) TCGA-YD-A89C-06 11 17134183 17134183 G A PIK3C2A Missense_Mutation p.P1118S 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 11 18467840 18467840 A T LDHC Missense_Mutation p.K265I 0.39 deleterious(0) possibly_damaging(0.839) TCGA-YD-A89C-06 11 1856366 1856366 C T SYT8 Missense_Mutation p.P25S 0.45 tolerated(0.36) benign(0.001) TCGA-YD-A89C-06 11 18750433 18750433 G A PTPN5 3'UTR 0.47 TCGA-YD-A89C-06 11 19077323 19077323 G A MRGPRX2 Silent p.I209I 0.35 TCGA-YD-A89C-06 11 22257809 22257809 A T ANO5 Missense_Mutation p.Y250F 0.32 tolerated(1) benign(0.008) TCGA-YD-A89C-06 11 24753694 24753694 A G LUZP2 Missense_Mutation p.T71A 0.16 tolerated(0.25) benign(0.054) TCGA-YD-A89C-06 11 27384481 27384481 C T CCDC34 Silent p.E87E 0.32 TCGA-YD-A89C-06 11 30926539 30926539 C T DCDC1 Missense_Mutation p.G1426E 0.33 deleterious(0) probably_damaging(0.969) TCGA-YD-A89C-06 11 31669307 31669307 C A ELP4 Missense_Mutation p.R316S 0.29 deleterious(0.01) possibly_damaging(0.537) TCGA-YD-A89C-06 11 33358685 33358685 C T HIPK3 Missense_Mutation p.S429F 0.32 deleterious(0) possibly_damaging(0.811) TCGA-YD-A89C-06 11 33370355 33370355 C T HIPK3 Missense_Mutation p.S886L 0.35 deleterious(0.01) benign(0.034) TCGA-YD-A89C-06 11 3423937 3423937 G A TSSC2 RNA 0.22 TCGA-YD-A89C-06 11 34472630 34472630 C T CAT Missense_Mutation p.R112W 0.43 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 11 34515044 34515044 G A ELF5 Nonsense_Mutation p.Q123* 0.46 TCGA-YD-A89C-06 11 40137389 40137389 C T LRRC4C Missense_Mutation p.E152K 0.39 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 11 43421445 43421445 C T TTC17 Nonsense_Mutation p.Q356* 0.46 TCGA-YD-A89C-06 11 4407446 4407446 G A TRIM21 Missense_Mutation p.P267L 0.45 tolerated(0.06) benign(0.172) TCGA-YD-A89C-06 11 4409587 4409587 C T TRIM21 Silent p.Q226Q 0.37 TCGA-YD-A89C-06 11 45246484 45246484 C A PRDM11 3'UTR 0.47 TCGA-YD-A89C-06 11 46407806 46407806 C T CHRM4 Missense_Mutation p.G101D 0.32 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 11 46785049 46785049 G A CKAP5 Silent p.A1223A 0.30 TCGA-YD-A89C-06 11 46880743 46880743 G A LRP4 Missense_Mutation p.L1837F 0.40 tolerated_low_confidence(0.11) probably_damaging(0.969) TCGA-YD-A89C-06 11 47296534 47296534 C T MADD Silent p.R161R 0.40 TCGA-YD-A89C-06 11 47296535 47296535 C T MADD Missense_Mutation p.R162W 0.41 deleterious(0.02) possibly_damaging(0.453) TCGA-YD-A89C-06 11 47869922 47869922 C T NUP160 Silent p.A17A 0.29 TCGA-YD-A89C-06 11 4791054 4791054 G A OR51F1 Missense_Mutation p.P32S 0.28 deleterious(0.01) benign(0.373) TCGA-YD-A89C-06 11 4825378 4825378 G A OR52R1 Missense_Mutation p.S78F 0.36 deleterious(0) possibly_damaging(0.646) TCGA-YD-A89C-06 11 48510885 48510885 C T OR4A47 Missense_Mutation p.P181S 0.31 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-YD-A89C-06 11 4904047 4904047 C T OR51T1 Silent p.F333F 0.32 TCGA-YD-A89C-06 11 4968331 4968331 G A OR51A4 5'UTR 0.34 TCGA-YD-A89C-06 11 49831722 49831722 C T RP11-707M1.1 RNA 0.34 TCGA-YD-A89C-06 11 49974046 49974046 C T OR4C13 Silent p.I24I 0.27 TCGA-YD-A89C-06 11 5021068 5021068 C T OR51L1 Missense_Mutation p.P286S 0.36 deleterious(0.01) possibly_damaging(0.674) TCGA-YD-A89C-06 11 51411710 51411710 T G OR4A5 Missense_Mutation p.K229T 0.24 deleterious_low_confidence(0) benign(0.003) TCGA-YD-A89C-06 11 5172844 5172844 G A OR52A1 Silent p.L252L 0.41 TCGA-YD-A89C-06 11 5221006 5221006 G A OR51V1 Missense_Mutation p.H309Y 0.45 deleterious(0) benign(0.065) TCGA-YD-A89C-06 11 5289807 5289807 C T HBE1 Silent p.V112V 0.35 TCGA-YD-A89C-06 11 5323147 5323147 G A OR51B4 Silent p.F10F 0.26 TCGA-YD-A89C-06 11 55321881 55321881 C T OR4C15 Silent p.F33F 0.33 TCGA-YD-A89C-06 11 55340354 55340354 C T OR4C16 Missense_Mutation p.P251S 0.35 deleterious(0) probably_damaging(0.954) TCGA-YD-A89C-06 11 5537729 5537729 G A UBQLNL 5'UTR 0.29 TCGA-YD-A89C-06 11 55595622 55595622 C T OR5L2 Missense_Mutation p.H310Y 0.41 tolerated(0.7) benign(0) TCGA-YD-A89C-06 11 55658884 55658884 C T TRIM51 Missense_Mutation p.L379F 0.25 deleterious(0) probably_damaging(0.976) TCGA-YD-A89C-06 11 55904757 55904757 G A OR8J3 Silent p.S146S 0.36 TCGA-YD-A89C-06 11 55944486 55944486 T C OR5J2 Silent p.L131L 0.32 TCGA-YD-A89C-06 11 56044080 56044080 C T OR5T1 Silent p.F322F 0.39 TCGA-YD-A89C-06 11 5632587 5632587 C T TRIM6 3'UTR 0.47 TCGA-YD-A89C-06 11 56409577 56409577 G A OR5AP2 Silent p.F113F 0.38 TCGA-YD-A89C-06 11 57176768 57176768 G A SLC43A3 Silent p.F417F 0.37 TCGA-YD-A89C-06 11 57569524 57569524 C T CTNND1 Missense_Mutation p.L426F 0.35 tolerated(0.09) benign(0.006) TCGA-YD-A89C-06 11 58125899 58125899 G A OR5B17 Missense_Mutation p.S215F 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-YD-A89C-06 11 58170649 58170649 G A OR5B3 Silent p.I78I 0.48 TCGA-YD-A89C-06 11 58601929 58601929 C T GLYATL2 Nonsense_Mutation p.W286* 0.26 TCGA-YD-A89C-06 11 58604798 58604798 C T GLYATL2 Missense_Mutation p.E87K 0.38 tolerated(0.09) benign(0.077) TCGA-YD-A89C-06 11 5862777 5862777 C T OR52E6 Silent p.L117L 0.38 TCGA-YD-A89C-06 11 58980257 58980257 C T MPEG1 Missense_Mutation p.E28K 0.34 tolerated(0.26) benign(0.001) TCGA-YD-A89C-06 11 59419974 59419974 G A PATL1 Silent p.T463T 0.32 TCGA-YD-A89C-06 11 59943037 59943037 C T MS4A6A Silent p.L157L 0.32 TCGA-YD-A89C-06 11 60183135 60183135 G A MS4A14 Missense_Mutation p.E265K 0.39 deleterious(0.04) probably_damaging(0.972) TCGA-YD-A89C-06 11 60235822 60235822 G A MS4A1 Missense_Mutation p.E259K 0.34 deleterious(0.02) possibly_damaging(0.861) TCGA-YD-A89C-06 11 60561529 60561529 G A MS4A10 Missense_Mutation p.E149K 0.39 deleterious(0) possibly_damaging(0.886) TCGA-YD-A89C-06 11 60666732 60666732 C T PRPF19 Nonsense_Mutation p.W291* 0.19 TCGA-YD-A89C-06 11 61615655 61615655 C T FADS2 Missense_Mutation p.H215Y 0.46 tolerated(0.21) benign(0.085) TCGA-YD-A89C-06 11 6190783 6190783 G A OR52B2 Silent p.F258F 0.25 TCGA-YD-A89C-06 11 6221088 6221088 C T OR52W1 Missense_Mutation p.S212L 0.37 tolerated(0.91) probably_damaging(0.998) TCGA-YD-A89C-06 11 62300869 62300869 G A AHNAK Silent p.H340H 0.34 TCGA-YD-A89C-06 11 62300870 62300870 T A AHNAK Missense_Mutation p.H340L 0.33 possibly_damaging(0.457) TCGA-YD-A89C-06 11 6239857 6239857 G A FAM160A2 Missense_Mutation p.R470C 0.29 deleterious(0.03) possibly_damaging(0.533) TCGA-YD-A89C-06 11 6265319 6265319 G A CNGA4 Missense_Mutation p.E470K 0.23 deleterious(0.02) benign(0.392) TCGA-YD-A89C-06 11 6265581 6265581 G A CNGA4 Missense_Mutation p.G557E 0.38 tolerated(0.25) benign(0.005) TCGA-YD-A89C-06 11 62762108 62762108 G A SLC22A8 Silent p.I374I 0.49 TCGA-YD-A89C-06 11 63884759 63884759 G A FLRT1 Silent p.R340R 0.19 TCGA-YD-A89C-06 11 64022406 64022406 C T PLCB3 Missense_Mutation p.P95S 0.24 tolerated(0.26) benign(0.009) TCGA-YD-A89C-06 11 64323732 64323732 C T SLC22A11 Silent p.R87R 0.40 TCGA-YD-A89C-06 11 64338530 64338530 G A SLC22A11 3'UTR 0.44 TCGA-YD-A89C-06 11 64434929 64434929 G A NRXN2 Missense_Mutation p.L531F 0.45 deleterious(0) possibly_damaging(0.803) TCGA-YD-A89C-06 11 64521004 64521004 G A PYGM Missense_Mutation p.L464F 0.62 deleterious(0) possibly_damaging(0.856) TCGA-YD-A89C-06 11 64807282 64807282 C T SNX15 3'UTR 0.33 TCGA-YD-A89C-06 11 64807283 64807283 C T SNX15 3'UTR 0.33 TCGA-YD-A89C-06 11 6498979 6498979 G A ARFIP2 Missense_Mutation p.A280V 0.44 tolerated(0.08) benign(0.061) TCGA-YD-A89C-06 11 65744526 65744526 C T SART1 Silent p.I633I 0.23 TCGA-YD-A89C-06 11 6591506 6591506 G A DNHD1 Missense_Mutation p.D4329N 0.48 probably_damaging(1) TCGA-YD-A89C-06 11 66082571 66082571 G A CD248 Missense_Mutation p.P643L 0.41 deleterious(0.01) benign(0.439) TCGA-YD-A89C-06 11 66260305 66260305 C T DPP3 Silent p.L369L 0.33 TCGA-YD-A89C-06 11 67203145 67203145 G A PTPRCAP 3'UTR 0.29 TCGA-YD-A89C-06 11 67203146 67203146 G A PTPRCAP 3'UTR 0.29 TCGA-YD-A89C-06 11 68213994 68213994 C T LRP5 Missense_Mutation p.P1527S 0.56 tolerated(0.83) benign(0.006) TCGA-YD-A89C-06 11 68579908 68579908 G A CPT1A Missense_Mutation p.T93M 0.37 tolerated(0.23) benign(0.018) TCGA-YD-A89C-06 11 6897920 6897920 C T OR10A4 Silent p.L14L 0.40 TCGA-YD-A89C-06 11 70333013 70333013 C T SHANK2 Missense_Mutation p.E1130K 0.37 deleterious(0) benign(0.04) TCGA-YD-A89C-06 11 7064412 7064412 G A NLRP14 Silent p.K385K 0.35 TCGA-YD-A89C-06 11 7064413 7064413 G A NLRP14 Missense_Mutation p.G386S 0.34 deleterious(0.01) possibly_damaging(0.871) TCGA-YD-A89C-06 11 71249110 71249110 C T KRTAP5-8 Silent p.C3C 0.40 TCGA-YD-A89C-06 11 721599 721599 G A EPS8L2 Nonsense_Mutation p.W268* 0.36 TCGA-YD-A89C-06 11 723309 723309 C T EPS8L2 Silent p.P470P 0.33 TCGA-YD-A89C-06 11 7324581 7324581 C T SYT9 Missense_Mutation p.R153C 0.32 deleterious(0) probably_damaging(0.991) TCGA-YD-A89C-06 11 75562968 75562968 T C UVRAG Missense_Mutation p.I53T 0.41 deleterious(0) possibly_damaging(0.828) TCGA-YD-A89C-06 11 78380427 78380427 G A TENM4 Silent p.T2321T 0.43 TCGA-YD-A89C-06 11 82924182 82924182 C T ANKRD42 Intron 0.35 TCGA-YD-A89C-06 11 840221 840221 T C POLR2L 3'UTR 0.36 TCGA-YD-A89C-06 11 84027992 84027992 C T DLG2 Intron 0.39 TCGA-YD-A89C-06 11 8435223 8435223 G A STK33 Missense_Mutation p.S388L 0.33 tolerated(0.36) benign(0.005) TCGA-YD-A89C-06 11 85396929 85396929 C T CCDC89 Missense_Mutation p.R82Q 0.38 tolerated(0.22) probably_damaging(0.995) TCGA-YD-A89C-06 11 85397235 85397235 G A CCDC89 5'UTR 0.34 TCGA-YD-A89C-06 11 89413811 89413811 G A FOLH1B RNA 0.29 TCGA-YD-A89C-06 11 92086437 92086437 G A FAT3 Missense_Mutation p.E387K 0.25 probably_damaging(0.998) TCGA-YD-A89C-06 11 92714680 92714680 C T MTNR1B Silent p.I97I 0.40 TCGA-YD-A89C-06 11 93088616 93088616 G A CCDC67 Missense_Mutation p.E37K 0.27 deleterious(0) possibly_damaging(0.907) TCGA-YD-A89C-06 11 94113669 94113669 G A GPR83 Silent p.F306F 0.35 TCGA-YD-A89C-06 12 100707294 100707294 C T SCYL2 Missense_Mutation p.P316L 0.43 tolerated(0.08) probably_damaging(0.951) TCGA-YD-A89C-06 12 101295595 101295595 G A ANO4 Missense_Mutation p.G11E 0.38 tolerated_low_confidence(0.13) benign(0.017) TCGA-YD-A89C-06 12 101505353 101505353 G A ANO4 Missense_Mutation p.G737E 0.27 tolerated(1) probably_damaging(1) TCGA-YD-A89C-06 12 10319488 10319488 C T OLR1 Missense_Mutation p.G83R 0.35 tolerated(0.11) benign(0.124) TCGA-YD-A89C-06 12 103700110 103700110 C T C12orf42 Silent p.R91R 0.36 TCGA-YD-A89C-06 12 104049246 104049246 G A STAB2 Missense_Mutation p.G541R 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-YD-A89C-06 12 109673431 109673431 C T ACACB Silent p.F1475F 0.39 TCGA-YD-A89C-06 12 110784163 110784163 C T ATP2A2 Missense_Mutation p.S1006L 0.37 tolerated_low_confidence(0.32) benign(0.004) TCGA-YD-A89C-06 12 11091591 11091591 G A TAS2R14 Silent p.F72F 0.43 TCGA-YD-A89C-06 12 11091784 11091784 A G TAS2R14 Missense_Mutation p.I8T 0.38 tolerated(0.7) benign(0.123) TCGA-YD-A89C-06 12 113400701 113400701 A T OAS3 Missense_Mutation p.K693I 0.32 deleterious(0.01) possibly_damaging(0.616) TCGA-YD-A89C-06 12 11546233 11546233 G A PRB2 Missense_Mutation p.P260L 0.33 tolerated(1) unknown(0) TCGA-YD-A89C-06 12 116424107 116424107 G A MED13L Silent p.A1434A 0.40 TCGA-YD-A89C-06 12 117462099 117462099 C T FBXW8 Silent p.N505N 0.33 TCGA-YD-A89C-06 12 117603335 117603335 G A FBXO21 Silent p.L427L 0.34 TCGA-YD-A89C-06 12 117701721 117701721 C T NOS1 Missense_Mutation p.R732Q 0.42 deleterious(0.01) benign(0.439) TCGA-YD-A89C-06 12 120288023 120288023 G A CIT Silent p.I157I 0.37 TCGA-YD-A89C-06 12 121132914 121132914 C T MLEC Missense_Mutation p.P203L 0.41 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 12 122670804 122670804 G A LRRC43 Missense_Mutation p.R160Q 0.38 tolerated(1) benign(0.029) TCGA-YD-A89C-06 12 122674676 122674676 G A LRRC43 Splice_Site p.X221_splice 0.32 TCGA-YD-A89C-06 12 123424824 123424824 G A ABCB9 Missense_Mutation p.S526F 0.38 deleterious(0) probably_damaging(0.921) TCGA-YD-A89C-06 12 124428742 124428742 G A CCDC92 Intron 0.41 TCGA-YD-A89C-06 12 124840051 124840051 G A NCOR2 Missense_Mutation p.S1103F 0.39 probably_damaging(0.999) TCGA-YD-A89C-06 12 125900150 125900150 G A TMEM132B Missense_Mutation p.E340K 0.40 tolerated(0.05) benign(0.329) TCGA-YD-A89C-06 12 126128690 126128690 G A TMEM132B Silent p.V497V 0.39 TCGA-YD-A89C-06 12 12814247 12814247 G A GPR19 Missense_Mutation p.S379F 0.40 tolerated(0.19) benign(0.037) TCGA-YD-A89C-06 12 130830331 130830331 C T PIWIL1 Missense_Mutation p.S75L 0.38 deleterious(0.02) possibly_damaging(0.453) TCGA-YD-A89C-06 12 130923029 130923029 G A RIMBP2 Nonsense_Mutation p.Q496* 0.42 TCGA-YD-A89C-06 12 15654634 15654634 C T PTPRO Missense_Mutation p.P248S 0.31 tolerated_low_confidence(0.16) benign(0.055) TCGA-YD-A89C-06 12 18847964 18847964 C T PLCZ1 Silent p.G447G 0.29 TCGA-YD-A89C-06 12 18876251 18876251 C T PLCZ1 Missense_Mutation p.E121K 0.37 deleterious(0.02) possibly_damaging(0.804) TCGA-YD-A89C-06 12 21036488 21036488 C T SLCO1B3 Missense_Mutation p.S545F 0.32 tolerated(0.2) benign(0.053) TCGA-YD-A89C-06 12 21531432 21531432 C T IAPP 3'UTR 0.21 TCGA-YD-A89C-06 12 21991062 21991062 G A ABCC9 Silent p.L1172L 0.51 TCGA-YD-A89C-06 12 22005125 22005125 C T ABCC9 Missense_Mutation p.R892K 0.36 deleterious(0.04) benign(0.124) TCGA-YD-A89C-06 12 27148330 27148330 G A TM7SF3 Missense_Mutation p.P177L 0.36 deleterious(0.03) possibly_damaging(0.662) TCGA-YD-A89C-06 12 27888426 27888426 T C MRPS35 Missense_Mutation p.L190S 0.45 deleterious(0) probably_damaging(0.954) TCGA-YD-A89C-06 12 31632594 31632594 A T DENND5B Missense_Mutation p.L278Q 0.46 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 12 33559866 33559866 C T SYT10 Missense_Mutation p.R312Q 0.42 deleterious(0.01) probably_damaging(0.927) TCGA-YD-A89C-06 12 42491731 42491731 G A GXYLT1 Silent p.I323I 0.39 TCGA-YD-A89C-06 12 43847741 43847741 C T ADAMTS20 Missense_Mutation p.E577K 0.41 tolerated(1) benign(0.001) TCGA-YD-A89C-06 12 43896072 43896072 C T ADAMTS20 Silent p.R250R 0.32 TCGA-YD-A89C-06 12 4479778 4479778 C T FGF23 Missense_Mutation p.E163K 0.38 tolerated(0.15) benign(0.126) TCGA-YD-A89C-06 12 4554561 4554561 G A FGF6 Missense_Mutation p.S59F 0.30 deleterious(0) probably_damaging(0.991) TCGA-YD-A89C-06 12 4554562 4554562 A T FGF6 Missense_Mutation p.S59T 0.31 deleterious(0.02) probably_damaging(0.952) TCGA-YD-A89C-06 12 4705802 4705802 G A DYRK4 Missense_Mutation p.R156K 0.40 tolerated(0.28) benign(0.065) TCGA-YD-A89C-06 12 49254900 49254900 G A RND1 Silent p.I111I 0.47 TCGA-YD-A89C-06 12 49952488 49952488 G A MCRS1 Missense_Mutation p.L456F 0.29 deleterious(0.02) possibly_damaging(0.712) TCGA-YD-A89C-06 12 49952489 49952489 G A MCRS1 Silent p.F455F 0.29 TCGA-YD-A89C-06 12 51319011 51319011 G A METTL7A Missense_Mutation p.E64K 0.30 tolerated(0.34) benign(0.022) TCGA-YD-A89C-06 12 52649972 52649972 G A KRT121P RNA 0.54 TCGA-YD-A89C-06 12 52714783 52714783 C T KRT83 Missense_Mutation p.E113K 0.39 deleterious(0) probably_damaging(0.971) TCGA-YD-A89C-06 12 52714926 52714926 C T KRT83 Missense_Mutation p.G65E 0.42 deleterious(0.02) benign(0.082) TCGA-YD-A89C-06 12 52714927 52714927 C T KRT83 Missense_Mutation p.G65R 0.44 tolerated(0.06) benign(0.052) TCGA-YD-A89C-06 12 52908809 52908809 C T KRT5 Missense_Mutation p.G564S 0.44 tolerated(0.24) unknown(0) TCGA-YD-A89C-06 12 52985326 52985326 G A KRT72 Silent p.I295I 0.44 TCGA-YD-A89C-06 12 54367577 54367577 C T HOXC11 Silent p.P184P 0.35 TCGA-YD-A89C-06 12 55248906 55248906 C T MUCL1 Missense_Mutation p.P22L 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A89C-06 12 55523942 55523942 C T OR9K2 Silent p.A130A 0.41 TCGA-YD-A89C-06 12 55641126 55641126 C T OR6C74 Missense_Mutation p.P19S 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.46) TCGA-YD-A89C-06 12 55887086 55887086 C T OR6C68 Missense_Mutation p.R309C 0.46 deleterious_low_confidence(0.02) benign(0.016) TCGA-YD-A89C-06 12 56720476 56720476 G A PAN2 Missense_Mutation p.S396F 0.31 deleterious(0) probably_damaging(0.926) TCGA-YD-A89C-06 12 56720526 56720526 G A PAN2 Silent p.L379L 0.42 TCGA-YD-A89C-06 12 57437057 57437057 C T MYO1A Silent p.K326K 0.44 TCGA-YD-A89C-06 12 57606341 57606341 C T LRP1 3'UTR 0.34 TCGA-YD-A89C-06 12 57870707 57870707 G A ARHGAP9 Missense_Mutation p.P304S 0.30 tolerated(0.25) benign(0.086) TCGA-YD-A89C-06 12 58001010 58001010 C T DTX3 Missense_Mutation p.P122S 0.21 tolerated_low_confidence(0.81) unknown(0) TCGA-YD-A89C-06 12 6030244 6030244 G A ANO2 Silent p.L162L 0.37 TCGA-YD-A89C-06 12 6464963 6464963 G A SCNN1A Missense_Mutation p.S379F 0.38 tolerated(0.09) benign(0.085) TCGA-YD-A89C-06 12 66152108 66152108 C T RPSAP52 RNA 0.19 TCGA-YD-A89C-06 12 66859124 66859124 G A GRIP1 Missense_Mutation p.T268I 0.38 deleterious(0.01) benign(0.032) TCGA-YD-A89C-06 12 6884451 6884451 C T LAG3 Missense_Mutation p.P265L 0.30 tolerated(0.34) benign(0.008) TCGA-YD-A89C-06 12 69125011 69125011 A G NUP107 Missense_Mutation p.H619R 0.30 tolerated(0.34) benign(0.005) TCGA-YD-A89C-06 12 70049004 70049004 G A BEST3 Missense_Mutation p.P564S 0.38 tolerated_low_confidence(0.2) benign(0.001) TCGA-YD-A89C-06 12 70070735 70070735 G A BEST3 Silent p.F276F 0.34 TCGA-YD-A89C-06 12 7045419 7045419 C T ATN1 Missense_Mutation p.P330L 0.33 probably_damaging(0.981) TCGA-YD-A89C-06 12 70963513 70963513 G A PTPRB Silent p.I1192I 0.40 TCGA-YD-A89C-06 12 71031137 71031137 C T PTPRB Silent p.L13L 0.59 TCGA-YD-A89C-06 12 72026116 72026116 G A ZFC3H1 Missense_Mutation p.P999L 0.32 deleterious(0) benign(0.218) TCGA-YD-A89C-06 12 72026117 72026117 G A ZFC3H1 Missense_Mutation p.P999S 0.31 tolerated(0.06) benign(0.01) TCGA-YD-A89C-06 12 73012731 73012731 G A TRHDE Silent p.K749K 0.31 TCGA-YD-A89C-06 12 73012732 73012732 G A TRHDE Missense_Mutation p.D750N 0.31 deleterious(0.01) benign(0.171) TCGA-YD-A89C-06 12 7548744 7548744 C T CD163L1 Missense_Mutation p.G666E 0.17 tolerated(1) benign(0.177) TCGA-YD-A89C-06 12 7586195 7586195 C T CD163L1 Missense_Mutation p.D74N 0.40 tolerated(0.13) probably_damaging(0.994) TCGA-YD-A89C-06 12 7636225 7636225 C T CD163 Silent p.V942V 0.39 TCGA-YD-A89C-06 12 76844693 76844693 T G OSBPL8 Missense_Mutation p.Y52S 0.34 tolerated_low_confidence(0.07) benign(0.039) TCGA-YD-A89C-06 12 80014972 80014972 C T PAWR Missense_Mutation p.E178K 0.36 deleterious(0.01) possibly_damaging(0.749) TCGA-YD-A89C-06 12 81283123 81283123 C A LIN7A Silent p.L36L 0.37 TCGA-YD-A89C-06 12 81647273 81647273 G A ACSS3 Splice_Site p.X607_splice 0.34 TCGA-YD-A89C-06 12 81661707 81661707 G A PPFIA2 Missense_Mutation p.P1157L 0.47 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 12 81661750 81661750 C T PPFIA2 Missense_Mutation p.E1143K 0.50 deleterious(0.01) benign(0.046) TCGA-YD-A89C-06 12 82147956 82147956 C T PPFIA2 Missense_Mutation p.M15I 0.29 tolerated(0.56) benign(0.026) TCGA-YD-A89C-06 12 82780736 82780736 C T METTL25 Silent p.N138N 0.26 TCGA-YD-A89C-06 12 8329953 8329953 G A ZNF705A Missense_Mutation p.R226K 0.33 tolerated(1) benign(0.007) TCGA-YD-A89C-06 12 83379786 83379786 C T TMTC2 Silent p.I677I 0.33 TCGA-YD-A89C-06 12 8374798 8374798 C T FAM90A1 Missense_Mutation p.E339K 0.31 tolerated(0.59) possibly_damaging(0.8) TCGA-YD-A89C-06 12 85626526 85626526 C T LRRIQ1 Nonsense_Mutation p.Q1670* 0.39 TCGA-YD-A89C-06 12 8667865 8667865 C T CLEC4D Missense_Mutation p.S21L 0.42 deleterious(0.01) benign(0.006) TCGA-YD-A89C-06 12 88391929 88391929 G A C12orf50 Missense_Mutation p.L58F 0.40 tolerated(0.69) benign(0.431) TCGA-YD-A89C-06 12 88477639 88477639 G A CEP290 Silent p.F1599F 0.35 TCGA-YD-A89C-06 12 88900125 88900125 C T KITLG Missense_Mutation p.E249K 0.32 deleterious(0.01) probably_damaging(0.957) TCGA-YD-A89C-06 12 89885887 89885887 C T POC1B Missense_Mutation p.G93E 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 12 91348190 91348190 C T CCER1 Silent p.R110R 0.56 TCGA-YD-A89C-06 12 9344840 9344840 C T PZP Missense_Mutation p.G499R 0.14 deleterious(0.01) possibly_damaging(0.57) TCGA-YD-A89C-06 12 98849087 98849087 G A SLC9A7P1 RNA 0.32 TCGA-YD-A89C-06 13 101944639 101944639 A T NALCN Missense_Mutation p.F293Y 0.44 tolerated(0.09) benign(0.173) TCGA-YD-A89C-06 13 107823083 107823083 C T FAM155A Missense_Mutation p.R380K 0.66 tolerated(0.13) benign(0.218) TCGA-YD-A89C-06 13 114134990 114134990 G A DCUN1D2 Missense_Mutation p.P97S 0.62 deleterious(0.02) possibly_damaging(0.623) TCGA-YD-A89C-06 13 114322214 114322214 C T GRK1 Silent p.F171F 0.75 TCGA-YD-A89C-06 13 20277457 20277457 G A PSPC1 Missense_Mutation p.S477L 0.23 deleterious(0.02) benign(0.019) TCGA-YD-A89C-06 13 24466137 24466137 C T C1QTNF9B Missense_Mutation p.G98E 0.12 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 13 25262509 25262509 C T ATP12A Missense_Mutation p.S94F 0.58 deleterious(0) possibly_damaging(0.495) TCGA-YD-A89C-06 13 25480130 25480132 AGT - CENPJ In_Frame_Del p.T682del 0.37 TCGA-YD-A89C-06 13 26116123 26116154 TGTGAAGGGCCCAACCGCCACCTCTATGACTT - ATP8A2 Frame_Shift_Del p.C240Hfs*17 0.52 TCGA-YD-A89C-06 13 26620956 26620956 C T SHISA2 Missense_Mutation p.A195T 0.51 tolerated(0.2) possibly_damaging(0.798) TCGA-YD-A89C-06 13 26788779 26788779 G A RNF6 Missense_Mutation p.R414W 0.25 deleterious(0) benign(0.043) TCGA-YD-A89C-06 13 27333160 27333160 G A GPR12 Missense_Mutation p.L269F 0.61 deleterious(0) possibly_damaging(0.875) TCGA-YD-A89C-06 13 29599432 29599432 C T MTUS2 Silent p.S209S 0.51 TCGA-YD-A89C-06 13 29933606 29933606 G A MTUS2 Missense_Mutation p.R1048K 0.38 tolerated(0.57) benign(0.003) TCGA-YD-A89C-06 13 32911768 32911768 T A BRCA2 Missense_Mutation p.F1092L 0.56 tolerated(0.56) benign(0.017) TCGA-YD-A89C-06 13 33250033 33250033 T C PDS5B Missense_Mutation p.F300S 0.16 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 13 46287412 46287412 G A SPERT Missense_Mutation p.M84I 0.32 tolerated_low_confidence(0.13) benign(0.002) TCGA-YD-A89C-06 13 52604627 52604627 C T UTP14C Silent p.L563L 0.30 TCGA-YD-A89C-06 13 52676093 52676093 G A NEK5 Nonsense_Mutation p.R290* 0.56 TCGA-YD-A89C-06 13 53001179 53001179 G A VPS36 Missense_Mutation p.S195L 0.47 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 13 53608566 53608566 G A OLFM4 Silent p.V96V 0.28 TCGA-YD-A89C-06 13 58299044 58299044 C T PCDH17 Silent p.V1032V 0.29 TCGA-YD-A89C-06 13 58299365 58299365 G A PCDH17 Silent p.V1139V 0.54 TCGA-YD-A89C-06 13 58299489 58299489 C T PCDH17 3'UTR 0.71 TCGA-YD-A89C-06 13 61987560 61987560 T C PCDH20 Silent p.V224V 0.48 TCGA-YD-A89C-06 13 70275873 70275873 C T KLHL1 Silent p.G736G 0.48 TCGA-YD-A89C-06 13 72440124 72440124 C T DACH1 Missense_Mutation p.G262R 0.53 probably_damaging(1) TCGA-YD-A89C-06 13 77672090 77672090 G A MYCBP2 Missense_Mutation p.P3029S 0.48 probably_damaging(0.993) TCGA-YD-A89C-06 13 77672696 77672696 G A MYCBP2 Missense_Mutation p.P2827S 0.28 probably_damaging(0.993) TCGA-YD-A89C-06 13 78218422 78218422 G A SCEL 3'UTR 0.58 TCGA-YD-A89C-06 13 79951569 79951569 C T RBM26 Missense_Mutation p.G91E 0.30 tolerated(1) unknown(0) TCGA-YD-A89C-06 13 95816726 95816726 C T ABCC4 Missense_Mutation p.G694E 0.54 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 13 99540900 99540900 G A DOCK9 Missense_Mutation p.S592F 0.61 deleterious(0) possibly_damaging(0.894) TCGA-YD-A89C-06 14 100610100 100610100 C T EVL 3'UTR 0.38 TCGA-YD-A89C-06 14 100820212 100820212 G A WARS Intron 0.44 TCGA-YD-A89C-06 14 101404588 101404588 A G SNORD113-5 RNA 0.39 TCGA-YD-A89C-06 14 101492369 101492369 G A MIR758 RNA 0.40 TCGA-YD-A89C-06 14 101518838 101518838 C A MIR487A RNA 0.36 TCGA-YD-A89C-06 14 102793152 102793152 C T ZNF839 Silent p.S373S 0.56 TCGA-YD-A89C-06 14 103806806 103806806 C T EIF5 Missense_Mutation p.R372C 0.33 tolerated(0.07) probably_damaging(0.918) TCGA-YD-A89C-06 14 105408373 105408373 G A AHNAK2 Missense_Mutation p.S4472F 0.38 possibly_damaging(0.743) TCGA-YD-A89C-06 14 105418430 105418430 G A AHNAK2 Missense_Mutation p.P1120S 0.35 possibly_damaging(0.685) TCGA-YD-A89C-06 14 105418431 105418431 G A AHNAK2 Silent p.A1119A 0.35 TCGA-YD-A89C-06 14 106054067 106054067 G A IGHA2 Missense_Mutation p.P151L 0.36 deleterious(0.01) possibly_damaging(0.519) TCGA-YD-A89C-06 14 106090969 106090969 G A IGHG4 Silent p.P276P 0.33 TCGA-YD-A89C-06 14 107218933 107218933 G A IGHV3-74 Nonsense_Mutation p.Q32* 0.37 TCGA-YD-A89C-06 14 20345184 20345184 C T OR4K2 Missense_Mutation p.P253L 0.34 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 14 20502084 20502084 G A OR4K13 Silent p.F278F 0.30 TCGA-YD-A89C-06 14 20612580 20612580 C T OR4N5 Missense_Mutation p.S229F 0.44 tolerated(0.16) possibly_damaging(0.861) TCGA-YD-A89C-06 14 20692508 20692508 G A OR11H6 Missense_Mutation p.E214K 0.32 tolerated(0.08) benign(0.12) TCGA-YD-A89C-06 14 20711638 20711638 C T OR11H4 Silent p.L230L 0.36 TCGA-YD-A89C-06 14 21051899 21051899 C T RNASE11 3'UTR 0.56 TCGA-YD-A89C-06 14 21270091 21270091 G A RNASE1 Missense_Mutation p.S46F 0.38 tolerated(0.11) possibly_damaging(0.554) TCGA-YD-A89C-06 14 21469533 21469533 G A SLC39A2 Missense_Mutation p.G242E 0.29 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 14 22251569 22251569 G A TRAV7 Silent p.G62G 0.42 TCGA-YD-A89C-06 14 22392261 22392261 G A TRAV14DV4 5'UTR 0.42 TCGA-YD-A89C-06 14 22392792 22392792 G A TRAV14DV4 Silent p.G105G 0.35 TCGA-YD-A89C-06 14 22447294 22447294 C T TRAV8-6 Missense_Mutation p.S92F 0.39 deleterious(0) possibly_damaging(0.876) TCGA-YD-A89C-06 14 22675459 22675459 G A TRAV34 Silent p.G10G 0.39 TCGA-YD-A89C-06 14 23346296 23346296 C T LRP10 Nonsense_Mutation p.R568* 0.43 TCGA-YD-A89C-06 14 23862934 23862934 C T MYH6 Missense_Mutation p.D957N 0.38 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 14 24614321 24614321 G A PSME2 Silent p.S102S 0.34 TCGA-YD-A89C-06 14 24730955 24730955 G A TGM1 Missense_Mutation p.L152F 0.33 tolerated(0.24) benign(0.001) TCGA-YD-A89C-06 14 28733703 28733703 G A BNIP3P1 RNA 0.23 TCGA-YD-A89C-06 14 29238021 29238021 A T FOXG1 3'UTR 0.50 TCGA-YD-A89C-06 14 30107965 30107965 G A PRKD1 Missense_Mutation p.P281L 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-YD-A89C-06 14 31782183 31782183 G A AL136418.1 3'Flank 0.25 TCGA-YD-A89C-06 14 37145647 37145647 C T PAX9 Missense_Mutation p.S339F 0.52 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-YD-A89C-06 14 42360643 42360643 G A LRFN5 Missense_Mutation p.G526R 0.32 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 14 44975778 44975778 C T FSCB Missense_Mutation p.G138E 0.34 tolerated(0.09) possibly_damaging(0.713) TCGA-YD-A89C-06 14 55817300 55817300 C T FBXO34 Silent p.I64I 0.28 TCGA-YD-A89C-06 14 58604847 58604847 G A C14orf37 Silent p.S410S 0.35 TCGA-YD-A89C-06 14 60063371 60063371 G A RTN1 3'UTR 0.41 TCGA-YD-A89C-06 14 63784435 63784435 G A GPHB5 RNA 0.22 TCGA-YD-A89C-06 14 64565526 64565526 C T SYNE2 Missense_Mutation p.S4123F 0.50 probably_damaging(0.957) TCGA-YD-A89C-06 14 64628842 64628842 C T SYNE2 Silent p.L5383L 0.40 TCGA-YD-A89C-06 14 65246624 65246624 C T SPTB Missense_Mutation p.R1431Q 0.36 tolerated(0.07) possibly_damaging(0.663) TCGA-YD-A89C-06 14 65252598 65252598 C T SPTB Silent p.E1211E 0.34 TCGA-YD-A89C-06 14 67847389 67847396 TTGGATAG - EIF2S1 Frame_Shift_Del p.L163Ffs*5 0.28 TCGA-YD-A89C-06 14 70420239 70420239 C T SMOC1 Missense_Mutation p.S123F 0.50 deleterious(0.01) possibly_damaging(0.576) TCGA-YD-A89C-06 14 70461189 70461189 G A SMOC1 Missense_Mutation p.R219K 0.37 tolerated(0.48) benign(0.006) TCGA-YD-A89C-06 14 70714480 70714480 C A ADAM21P1 RNA 0.08 TCGA-YD-A89C-06 14 74757038 74757038 G A ABCD4 Missense_Mutation p.T428I 0.40 deleterious(0) probably_damaging(0.971) TCGA-YD-A89C-06 14 76965239 76965239 C T ESRRB Intron 0.37 TCGA-YD-A89C-06 14 77255434 77255434 G A ANGEL1 3'UTR 0.24 TCGA-YD-A89C-06 14 77948751 77948751 G A ISM2 Missense_Mutation p.A296V 0.32 tolerated(0.15) benign(0.001) TCGA-YD-A89C-06 14 78399825 78399825 C T ADCK1 3'UTR 0.42 TCGA-YD-A89C-06 14 80677621 80677621 C T DIO2 Silent p.K65K 0.34 TCGA-YD-A89C-06 14 81606081 81606081 G A TSHR Missense_Mutation p.E251K 0.30 tolerated(1) benign(0.04) TCGA-YD-A89C-06 14 81736918 81736918 G A STON2 Intron 0.32 TCGA-YD-A89C-06 14 81862267 81862267 G A STON2 Missense_Mutation p.S115F 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.617) TCGA-YD-A89C-06 14 86088940 86088940 C T FLRT2 Missense_Mutation p.P361L 0.36 tolerated(0.06) benign(0.009) TCGA-YD-A89C-06 14 88904536 88904536 C T SPATA7 Missense_Mutation p.H524Y 0.48 tolerated(0.15) benign(0) TCGA-YD-A89C-06 14 92280067 92280067 C T TC2N Missense_Mutation p.G16D 0.30 tolerated(0.3) benign(0.066) TCGA-YD-A89C-06 14 94044288 94044288 C T UNC79 Missense_Mutation p.P594L 0.37 deleterious(0.01) possibly_damaging(0.526) TCGA-YD-A89C-06 14 94744955 94744955 G A PPP4R4 Splice_Site p.X866_splice 0.23 TCGA-YD-A89C-06 14 94776105 94776105 C T SERPINA6 Silent p.T284T 0.33 TCGA-YD-A89C-06 14 94936084 94936084 G A SERPINA9 Missense_Mutation p.R50C 0.44 tolerated(0.08) benign(0.001) TCGA-YD-A89C-06 14 97002296 97002296 C T PAPOLA Silent p.S330S 0.38 TCGA-YD-A89C-06 14 97319187 97319187 G A VRK1 Missense_Mutation p.D132N 0.19 deleterious(0) benign(0.079) TCGA-YD-A89C-06 14 99724038 99724038 G A BCL11B Missense_Mutation p.P66L 0.29 deleterious(0) benign(0) TCGA-YD-A89C-06 15 100332424 100332424 G A AC090825.1 5'Flank 0.05 TCGA-YD-A89C-06 15 100537781 100537781 G A ADAMTS17 Missense_Mutation p.P869S 0.08 tolerated(0.19) benign(0.111) TCGA-YD-A89C-06 15 101013166 101013166 A C CERS3 Missense_Mutation p.V234G 0.10 deleterious(0) probably_damaging(0.92) TCGA-YD-A89C-06 15 101109642 101109642 G A LINS Missense_Mutation p.S692F 0.04 tolerated(0.17) benign(0.109) TCGA-YD-A89C-06 15 101114322 101114322 G A LINS Silent p.F252F 0.07 TCGA-YD-A89C-06 15 101529640 101529640 C T LRRK1 Intron 0.06 TCGA-YD-A89C-06 15 101598331 101598331 G A LRRK1 Missense_Mutation p.G1555E 0.08 tolerated(0.07) possibly_damaging(0.456) TCGA-YD-A89C-06 15 101815502 101815502 T C VIMP Silent p.E92E 0.11 TCGA-YD-A89C-06 15 20488819 20488819 C G CHEK2P2 RNA 0.20 TCGA-YD-A89C-06 15 23445541 23445541 C T AC100757.1 3'Flank 0.24 TCGA-YD-A89C-06 15 23890704 23890704 C T MAGEL2 Missense_Mutation p.R126K 0.41 tolerated_low_confidence(0.21) benign(0.018) TCGA-YD-A89C-06 15 23891027 23891027 C T MAGEL2 Silent p.K18K 0.27 TCGA-YD-A89C-06 15 24924579 24924579 C T NPAP1 3'UTR 0.46 TCGA-YD-A89C-06 15 25328005 25328005 C T SNORD116-16 RNA 0.35 TCGA-YD-A89C-06 15 25417848 25417848 G A SNORD115-2 RNA 0.30 TCGA-YD-A89C-06 15 25523518 25523518 G A SNORD109B RNA 0.22 TCGA-YD-A89C-06 15 28090138 28090138 T C OCA2 Missense_Mutation p.H800R 0.44 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 15 33928576 33928576 G A RYR3 Splice_Site p.X1128_splice 0.36 TCGA-YD-A89C-06 15 33955871 33955871 C T RYR3 Missense_Mutation p.A1851V 0.40 possibly_damaging(0.849) TCGA-YD-A89C-06 15 34047341 34047341 G A RYR3 Silent p.L2825L 0.25 TCGA-YD-A89C-06 15 34135754 34135754 C T RYR3 Silent p.N4425N 0.36 TCGA-YD-A89C-06 15 34356139 34356139 C T CHRM5 Silent p.F407F 0.43 TCGA-YD-A89C-06 15 34376512 34376515 AATG - EMC7 3'UTR 0.31 TCGA-YD-A89C-06 15 34553133 34553133 G A SLC12A6 Silent p.L135L 0.28 TCGA-YD-A89C-06 15 35530163 35530163 G A ANP32AP1 RNA 0.50 TCGA-YD-A89C-06 15 38643453 38643453 C T SPRED1 Missense_Mutation p.S308F 0.21 deleterious(0.01) possibly_damaging(0.653) TCGA-YD-A89C-06 15 41120588 41120588 G A PPP1R14D Silent p.F84F 0.39 TCGA-YD-A89C-06 15 41226780 41226780 G A DLL4 Silent p.K295K 0.37 TCGA-YD-A89C-06 15 42058698 42058698 C T MGA Silent p.S2806S 0.36 TCGA-YD-A89C-06 15 42058845 42058845 C T MGA Silent p.F2855F 0.36 TCGA-YD-A89C-06 15 42470668 42470668 G A VPS39 Silent p.P273P 0.30 TCGA-YD-A89C-06 15 43507335 43507335 G A EPB42 Missense_Mutation p.L160F 0.31 tolerated(0.62) benign(0.018) TCGA-YD-A89C-06 15 43571919 43571919 C T TGM7 Missense_Mutation p.V528M 0.37 tolerated(0.24) benign(0.008) TCGA-YD-A89C-06 15 43817947 43817947 G A MAP1A Missense_Mutation p.D1426N 0.26 benign(0.009) TCGA-YD-A89C-06 15 43873490 43873490 G A PPIP5K1 Nonsense_Mutation p.R292* 0.21 TCGA-YD-A89C-06 15 43891079 43891079 G A CKMT1B Missense_Mutation p.G356R 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 15 45387230 45387230 G A DUOX2 Silent p.I1433I 0.23 TCGA-YD-A89C-06 15 45434230 45434230 C T DUOX1 Missense_Mutation p.P581L 0.21 deleterious(0) benign(0.197) TCGA-YD-A89C-06 15 45560442 45560442 G A SLC28A2 Missense_Mutation p.G412R 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 15 45848005 45848005 G A RP11-96O20.2 5'Flank 0.39 TCGA-YD-A89C-06 15 48738959 48738959 G A FBN1 Missense_Mutation p.S1911F 0.33 probably_damaging(0.911) TCGA-YD-A89C-06 15 49327689 49327689 G A SECISBP2L Missense_Mutation p.H124Y 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-YD-A89C-06 15 50535149 50535149 G A HDC Missense_Mutation p.L433F 0.43 deleterious(0.03) benign(0.369) TCGA-YD-A89C-06 15 51350112 51350112 C T TNFAIP8L3 Missense_Mutation p.G282E 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 15 51504610 51504610 C T CYP19A1 Silent p.K390K 0.35 TCGA-YD-A89C-06 15 54792337 54792337 C T UNC13C Silent p.F1707F 0.32 TCGA-YD-A89C-06 15 54841879 54841879 C T UNC13C Missense_Mutation p.S1956F 0.30 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-YD-A89C-06 15 55839167 55839167 C T PYGO1 Missense_Mutation p.R105K 0.36 deleterious(0.03) probably_damaging(0.97) TCGA-YD-A89C-06 15 59911287 59911287 G A GCNT3 Missense_Mutation p.D284N 0.35 tolerated(0.34) benign(0.21) TCGA-YD-A89C-06 15 60907119 60907119 G A RORA Intron 0.28 TCGA-YD-A89C-06 15 62146654 62146654 G A VPS13C 3'UTR 0.42 TCGA-YD-A89C-06 15 62212310 62212310 G A VPS13C Missense_Mutation p.S2478F 0.19 deleterious(0) probably_damaging(0.921) TCGA-YD-A89C-06 15 62234115 62234115 A C VPS13C Missense_Mutation p.I1767S 0.16 deleterious(0) possibly_damaging(0.824) TCGA-YD-A89C-06 15 62986577 62986577 C T TLN2 Silent p.S426S 0.37 TCGA-YD-A89C-06 15 64419409 64419409 C T SNX1 Missense_Mutation p.S230F 0.42 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 15 65041331 65041331 C T RBPMS2 Missense_Mutation p.E96K 0.39 deleterious(0.01) probably_damaging(0.936) TCGA-YD-A89C-06 15 65490461 65490461 C T CILP Silent p.R721R 0.31 TCGA-YD-A89C-06 15 65491438 65491438 C T CILP Splice_Site p.X396_splice 0.29 TCGA-YD-A89C-06 15 65494337 65494337 G A CILP Silent p.S353S 0.39 TCGA-YD-A89C-06 15 65678289 65678289 G A IGDCC4 Silent p.S1020S 0.39 TCGA-YD-A89C-06 15 65687505 65687505 G A IGDCC4 Silent p.F501F 0.35 TCGA-YD-A89C-06 15 66844497 66844497 C T LCTL Missense_Mutation p.G403D 0.11 tolerated(0.06) probably_damaging(0.993) TCGA-YD-A89C-06 15 66850160 66850160 C T LCTL Silent p.K274K 0.15 TCGA-YD-A89C-06 15 67473681 67473681 C T SMAD3 Missense_Mutation p.S254F 0.37 deleterious(0) probably_damaging(0.98) TCGA-YD-A89C-06 15 68613814 68613814 C T ITGA11 Missense_Mutation p.D784N 0.06 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 15 69324109 69324109 G A NOX5 Missense_Mutation p.E193K 0.16 deleterious(0.01) possibly_damaging(0.57) TCGA-YD-A89C-06 15 70994217 70994217 C T UACA Intron 0.36 TCGA-YD-A89C-06 15 71256236 71256236 A C LRRC49 Missense_Mutation p.M301L 0.17 tolerated(1) benign(0) TCGA-YD-A89C-06 15 74177154 74177154 C T TBC1D21 Missense_Mutation p.P134S 0.08 tolerated(0.48) benign(0.174) TCGA-YD-A89C-06 15 74865512 74865512 C T ARID3B Silent p.L222L 0.11 TCGA-YD-A89C-06 15 75042346 75042346 C T CYP1A2 Silent p.S89S 0.16 TCGA-YD-A89C-06 15 75668079 75668079 G A SIN3A Missense_Mutation p.S1173F 0.15 deleterious(0) probably_damaging(0.91) TCGA-YD-A89C-06 15 75980197 75980197 G A CSPG4 Missense_Mutation p.A1070V 0.13 deleterious(0.01) possibly_damaging(0.87) TCGA-YD-A89C-06 15 77239828 77239828 G T RCN2 Nonsense_Mutation p.E210* 0.10 TCGA-YD-A89C-06 15 77406382 77406382 G A PEAK1 3'UTR 0.20 TCGA-YD-A89C-06 15 77472501 77472501 A C PEAK1 Missense_Mutation p.L590V 0.15 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 15 77908052 77908052 G A LINGO1 Missense_Mutation p.P66L 0.18 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 15 78393821 78393821 C T SH2D7 Missense_Mutation p.T409I 0.24 tolerated(0.58) benign(0.018) TCGA-YD-A89C-06 15 78486910 78486910 C T ACSBG1 Missense_Mutation p.E131K 0.10 tolerated(0.38) possibly_damaging(0.834) TCGA-YD-A89C-06 15 78562854 78562854 C T DNAJA4 Nonsense_Mutation p.Q79* 0.15 TCGA-YD-A89C-06 15 79064148 79064148 G A ADAMTS7 Missense_Mutation p.P719S 0.11 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 15 79069818 79069818 C T ADAMTS7 Missense_Mutation p.G479R 0.17 deleterious(0) probably_damaging(0.931) TCGA-YD-A89C-06 15 80743312 80743312 C T ARNT2 Silent p.A41A 0.16 TCGA-YD-A89C-06 15 81041884 81041884 C T ABHD17C Silent p.L207L 0.08 TCGA-YD-A89C-06 15 81176645 81176645 G A KIAA1199 Silent p.R249R 0.29 TCGA-YD-A89C-06 15 81188289 81188289 G A KIAA1199 Nonsense_Mutation p.W433* 0.15 TCGA-YD-A89C-06 15 81241077 81241077 G A KIAA1199 Intron 0.13 TCGA-YD-A89C-06 15 81241078 81241078 G A KIAA1199 Intron 0.12 TCGA-YD-A89C-06 15 81582859 81582859 G C IL16 Missense_Mutation p.E466D 0.11 tolerated(0.33) benign(0.04) TCGA-YD-A89C-06 15 81651781 81651781 G A TMC3 Silent p.F142F 0.11 TCGA-YD-A89C-06 15 82507122 82507122 G T EFTUD1 Missense_Mutation p.N562K 0.17 tolerated(0.47) benign(0.001) TCGA-YD-A89C-06 15 83926276 83926276 G A BNC1 Missense_Mutation p.S968L 0.12 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 15 83932798 83932798 C T BNC1 Missense_Mutation p.R402Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 15 83933150 83933150 G A BNC1 Missense_Mutation p.P285S 0.16 tolerated(0.73) benign(0.001) TCGA-YD-A89C-06 15 83933151 83933151 G A BNC1 Silent p.F284F 0.17 TCGA-YD-A89C-06 15 84159516 84159516 G A SH3GL3 Intron 0.76 TCGA-YD-A89C-06 15 84159531 84159531 C T SH3GL3 Intron 0.15 TCGA-YD-A89C-06 15 85400673 85400673 G A ALPK3 Missense_Mutation p.D1104N 0.36 deleterious_low_confidence(0.02) benign(0.03) TCGA-YD-A89C-06 15 86801192 86801192 C T AGBL1 Intron 0.18 TCGA-YD-A89C-06 15 87089343 87089343 C T AGBL1 Silent p.I886I 0.07 TCGA-YD-A89C-06 15 88420194 88420194 G A NTRK3 Missense_Mutation p.T831I 0.09 deleterious(0) benign(0.056) TCGA-YD-A89C-06 15 88483899 88483899 G A NTRK3 Silent p.C557C 0.23 TCGA-YD-A89C-06 15 88678335 88678335 G A NTRK3 Missense_Mutation p.P401S 0.10 tolerated(0.67) benign(0.01) TCGA-YD-A89C-06 15 89392809 89392809 G A ACAN Missense_Mutation p.G625S 0.11 deleterious(0.03) unknown(0) TCGA-YD-A89C-06 15 89395078 89395078 C T ACAN Missense_Mutation p.P694S 0.22 tolerated(0.29) unknown(0) TCGA-YD-A89C-06 15 89398179 89398179 C T ACAN Missense_Mutation p.S788F 0.23 tolerated(0.56) benign(0) TCGA-YD-A89C-06 15 89400227 89400227 C T ACAN Missense_Mutation p.P1471S 0.11 tolerated(0.18) possibly_damaging(0.829) TCGA-YD-A89C-06 15 90119408 90119408 C T TICRR Silent p.V197V 0.08 TCGA-YD-A89C-06 15 90119409 90119409 C T TICRR Missense_Mutation p.R198W 0.09 deleterious(0) possibly_damaging(0.663) TCGA-YD-A89C-06 15 90328525 90328525 G A ANPEP 3'UTR 0.08 TCGA-YD-A89C-06 15 90771814 90771814 C T SEMA4B Missense_Mutation p.S818F 0.07 deleterious(0) probably_damaging(0.984) TCGA-YD-A89C-06 15 91017136 91017136 C T IQGAP1 Silent p.S814S 0.10 TCGA-YD-A89C-06 15 91422735 91422735 C T FURIN Missense_Mutation p.P372L 0.13 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 15 97328415 97328415 G A SPATA8 3'UTR 0.19 TCGA-YD-A89C-06 15 99670165 99670165 G A SYNM Missense_Mutation p.E533K 0.06 tolerated(0.18) probably_damaging(0.993) TCGA-YD-A89C-06 15 99670732 99670732 G A SYNM Missense_Mutation p.E722K 0.10 tolerated(0.43) probably_damaging(0.995) TCGA-YD-A89C-06 15 99671981 99671981 G A SYNM Missense_Mutation p.R1138Q 0.13 tolerated(1) benign(0.002) TCGA-YD-A89C-06 15 99672074 99672074 C T SYNM Missense_Mutation p.S1169F 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-YD-A89C-06 16 10912038 10912038 G A TVP23A Missense_Mutation p.A4V 0.44 tolerated(0.19) benign(0.011) TCGA-YD-A89C-06 16 11643580 11643580 G A LITAF Silent p.F133F 0.35 TCGA-YD-A89C-06 16 14676102 14676102 G A PARN Silent p.L376L 0.39 TCGA-YD-A89C-06 16 16253384 16253384 G A ABCC6 Silent p.I1230I 0.39 TCGA-YD-A89C-06 16 16284174 16284174 G A ABCC6 Silent p.I494I 0.28 TCGA-YD-A89C-06 16 1842307 1842307 C T IGFALS Missense_Mutation p.G76S 0.25 tolerated(0.92) possibly_damaging(0.855) TCGA-YD-A89C-06 16 18846288 18846288 G A SMG1 Silent p.F2752F 0.36 TCGA-YD-A89C-06 16 19032988 19032988 C T TMC7 Silent p.F166F 0.28 TCGA-YD-A89C-06 16 19475148 19475148 C G TMC5 Missense_Mutation p.S429R 0.40 tolerated(0.19) benign(0.058) TCGA-YD-A89C-06 16 19498601 19498601 C T TMC5 Silent p.F842F 0.29 TCGA-YD-A89C-06 16 20043797 20043797 C T GPR139 Missense_Mutation p.E108K 0.47 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 16 20359848 20359848 C T UMOD Missense_Mutation p.D259N 0.48 tolerated(0.26) benign(0.003) TCGA-YD-A89C-06 16 20451811 20451811 G A ACSM5 3'UTR 0.43 TCGA-YD-A89C-06 16 20471593 20471593 C T ACSM2A Missense_Mutation p.H53Y 0.43 tolerated(1) benign(0.008) TCGA-YD-A89C-06 16 20488755 20488755 C T ACSM2A Missense_Mutation p.S388F 0.34 deleterious(0) benign(0.082) TCGA-YD-A89C-06 16 20788891 20788891 G A ACSM3 Silent p.K209K 0.35 TCGA-YD-A89C-06 16 20788892 20788892 G A ACSM3 Missense_Mutation p.E210K 0.35 tolerated(0.11) benign(0.026) TCGA-YD-A89C-06 16 20981266 20981266 G A DNAH3 Missense_Mutation p.A2769V 0.44 deleterious(0.01) probably_damaging(0.92) TCGA-YD-A89C-06 16 21053505 21053505 G A DNAH3 Silent p.V1494V 0.38 TCGA-YD-A89C-06 16 21222704 21222704 C T ZP2 Silent p.S25S 0.41 TCGA-YD-A89C-06 16 22155605 22155605 A T VWA3A Missense_Mutation p.E877V 0.44 deleterious(0) possibly_damaging(0.822) TCGA-YD-A89C-06 16 227415 227415 G A HBA1 3'UTR 0.36 TCGA-YD-A89C-06 16 22926707 22926707 G A HS3ST2 Missense_Mutation p.G310R 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-YD-A89C-06 16 23768907 23768907 C T CHP2 3'UTR 0.37 TCGA-YD-A89C-06 16 24919447 24919447 G A SLC5A11 Missense_Mutation p.E477K 0.46 deleterious(0.03) possibly_damaging(0.768) TCGA-YD-A89C-06 16 26147294 26147294 G A HS3ST4 Missense_Mutation p.G366R 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A89C-06 16 29912768 29912768 G A ASPHD1 Nonsense_Mutation p.W159* 0.54 TCGA-YD-A89C-06 16 30771707 30771707 G A C16orf93 Missense_Mutation p.L123F 0.36 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 16 3080570 3080570 C T CCDC64B Silent p.Q214Q 0.39 TCGA-YD-A89C-06 16 31141588 31141588 G A KAT8 Missense_Mutation p.E305K 0.28 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 16 31152059 31152059 G A PRSS36 Missense_Mutation p.P641S 0.32 tolerated(0.2) possibly_damaging(0.679) TCGA-YD-A89C-06 16 31927194 31927194 C T ZNF267 Missense_Mutation p.H542Y 0.44 deleterious(0) possibly_damaging(0.84) TCGA-YD-A89C-06 16 4164236 4164236 A C ADCY9 Missense_Mutation p.F403C 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 16 47195736 47195736 C T ITFG1 Missense_Mutation p.R529Q 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-YD-A89C-06 16 4749061 4749061 A G ANKS3 Silent p.I467I 0.39 TCGA-YD-A89C-06 16 4815898 4815898 C T ZNF500 Missense_Mutation p.E28K 0.29 deleterious(0) probably_damaging(0.956) TCGA-YD-A89C-06 16 4927007 4927007 C T UBN1 Missense_Mutation p.H1054Y 0.38 deleterious(0) benign(0.39) TCGA-YD-A89C-06 16 50138959 50138959 G A HEATR3 Missense_Mutation p.R677K 0.37 tolerated_low_confidence(0.87) benign(0.004) TCGA-YD-A89C-06 16 50827460 50827460 C T CYLD Missense_Mutation p.P785L 0.34 tolerated(0.71) probably_damaging(1) TCGA-YD-A89C-06 16 51171159 51171159 C T SALL1 Missense_Mutation p.G1280E 0.27 deleterious(0) probably_damaging(0.954) TCGA-YD-A89C-06 16 55530917 55530917 G A MMP2 Missense_Mutation p.E518K 0.53 tolerated(0.63) benign(0.063) TCGA-YD-A89C-06 16 55844845 55844845 G A CES1 Silent p.P388P 0.23 TCGA-YD-A89C-06 16 56423106 56423106 G A AMFR Missense_Mutation p.H423Y 0.35 deleterious(0) benign(0.213) TCGA-YD-A89C-06 16 57003550 57003550 C T CETP Silent p.F132F 0.28 TCGA-YD-A89C-06 16 57719615 57719615 C T GPR97 Silent p.F439F 0.41 TCGA-YD-A89C-06 16 57738800 57738800 G A CCDC135 Missense_Mutation p.E238K 0.43 tolerated(0.33) benign(0.012) TCGA-YD-A89C-06 16 58589698 58589698 G A CNOT1 Missense_Mutation p.S865F 0.35 deleterious(0) probably_damaging(0.99) TCGA-YD-A89C-06 16 65032664 65032664 C T CDH11 Silent p.G108G 0.44 TCGA-YD-A89C-06 16 67197137 67197137 C T FBXL8 Missense_Mutation p.P180L 0.38 deleterious(0) possibly_damaging(0.908) TCGA-YD-A89C-06 16 67697033 67697033 G A ENKD1 3'UTR 0.22 TCGA-YD-A89C-06 16 67859611 67859611 A C TSNAXIP1 Missense_Mutation p.K232Q 0.39 deleterious(0.01) probably_damaging(0.948) TCGA-YD-A89C-06 16 68208348 68208348 C T NFATC3 Missense_Mutation p.H616Y 0.35 deleterious(0) possibly_damaging(0.824) TCGA-YD-A89C-06 16 68397441 68397441 C T SMPD3 Missense_Mutation p.G556D 0.22 tolerated(0.27) possibly_damaging(0.673) TCGA-YD-A89C-06 16 69921984 69921984 C T WWP2 Missense_Mutation p.S249F 0.26 deleterious(0.02) benign(0.084) TCGA-YD-A89C-06 16 70871662 70871662 G A HYDIN Silent p.L4391L 0.35 TCGA-YD-A89C-06 16 70884501 70884501 C T HYDIN Silent p.L4167L 0.23 TCGA-YD-A89C-06 16 70942262 70942262 G A HYDIN Silent p.F2763F 0.14 TCGA-YD-A89C-06 16 70942684 70942684 C T HYDIN Silent p.Q2695Q 0.41 TCGA-YD-A89C-06 16 71019187 71019187 C T HYDIN Silent p.T1411T 0.38 TCGA-YD-A89C-06 16 71163558 71163558 G A HYDIN Silent p.F404F 0.27 TCGA-YD-A89C-06 16 71570564 71570564 T G CHST4 Intron 0.35 TCGA-YD-A89C-06 16 72110270 72110270 G A HPR Missense_Mutation p.G113S 0.22 deleterious(0) possibly_damaging(0.864) TCGA-YD-A89C-06 16 72845844 72845844 G A ZFHX3 Missense_Mutation p.S1208L 0.39 benign(0.005) TCGA-YD-A89C-06 16 74946185 74946185 G A WDR59 Missense_Mutation p.P434S 0.43 deleterious(0) probably_damaging(0.911) TCGA-YD-A89C-06 16 75512830 75512830 G A CHST6 Silent p.L299L 0.31 TCGA-YD-A89C-06 16 81198363 81198363 C T PKD1L2 RNA 0.25 TCGA-YD-A89C-06 16 82182214 82182214 G A MPHOSPH6 3'UTR 0.20 TCGA-YD-A89C-06 16 84203873 84203873 A T DNAAF1 Missense_Mutation p.K480M 0.44 tolerated(0.1) benign(0.26) TCGA-YD-A89C-06 16 87938439 87938439 C T CA5A Missense_Mutation p.E138K 0.35 tolerated(0.2) benign(0.302) TCGA-YD-A89C-06 16 90161574 90161574 G A TUBB8P7 RNA 0.25 TCGA-YD-A89C-06 16 9916226 9916226 C T GRIN2A Missense_Mutation p.G688E 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 16 9923448 9923448 G A GRIN2A Silent p.F613F 0.33 TCGA-YD-A89C-06 17 10204260 10204260 G A MYH13 3'UTR 0.34 TCGA-YD-A89C-06 17 10222306 10222306 C T MYH13 Missense_Mutation p.R1180K 0.43 deleterious(0.01) benign(0.301) TCGA-YD-A89C-06 17 10235530 10235530 G A MYH13 Silent p.I728I 0.40 TCGA-YD-A89C-06 17 10309478 10309478 C T MYH8 Missense_Mutation p.G771E 0.51 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 17 10356568 10356568 C T MYH4 Silent p.Q1004Q 0.30 TCGA-YD-A89C-06 17 10357991 10357991 C T MYH4 Missense_Mutation p.E858K 0.37 tolerated(0.07) probably_damaging(0.995) TCGA-YD-A89C-06 17 10424534 10424534 G A MYH2 3'UTR 0.32 TCGA-YD-A89C-06 17 10608643 10608643 C T ADPRM Nonsense_Mutation p.Q134* 0.34 TCGA-YD-A89C-06 17 11573013 11573013 G A DNAH9 Missense_Mutation p.M1085I 0.36 benign(0.01) TCGA-YD-A89C-06 17 11659885 11659885 G A DNAH9 Missense_Mutation p.V2247M 0.33 benign(0.284) TCGA-YD-A89C-06 17 11660952 11660952 A G DNAH9 Missense_Mutation p.N2313S 0.42 benign(0.15) TCGA-YD-A89C-06 17 16470749 16470749 G A ZNF287 Silent p.T99T 0.29 TCGA-YD-A89C-06 17 16665012 16665012 G A CCDC144A Missense_Mutation p.E1216K 0.18 deleterious(0.05) possibly_damaging(0.698) TCGA-YD-A89C-06 17 16703325 16703325 C T CCDC144A 3'UTR 0.15 TCGA-YD-A89C-06 17 16831050 16831050 C T TBC1D27 RNA 0.32 TCGA-YD-A89C-06 17 16831110 16831110 C T TBC1D27 Intron 0.36 TCGA-YD-A89C-06 17 18030464 18030464 G A MYO15A Silent p.R1339R 0.45 TCGA-YD-A89C-06 17 18075074 18075074 C T MYO15A Missense_Mutation p.A3402V 0.37 unknown(0) TCGA-YD-A89C-06 17 18075075 18075075 C T MYO15A Silent p.A3402A 0.37 TCGA-YD-A89C-06 17 21319539 21319539 C T KCNJ12 Silent p.I295I 0.19 TCGA-YD-A89C-06 17 21319618 21319618 C T KCNJ12 Silent p.L322L 0.06 TCGA-YD-A89C-06 17 25746842 25746842 G A TBC1D3P5 RNA 0.35 TCGA-YD-A89C-06 17 25909938 25909938 C T KSR1 Missense_Mutation p.R126C 0.44 deleterious(0) benign(0.093) TCGA-YD-A89C-06 17 26495569 26495569 C T NLK Silent p.I311I 0.34 TCGA-YD-A89C-06 17 26671444 26671444 G A TNFAIP1 Missense_Mutation p.E257K 0.30 deleterious(0) possibly_damaging(0.481) TCGA-YD-A89C-06 17 27308495 27308495 G A SEZ6 Silent p.I206I 0.33 TCGA-YD-A89C-06 17 29283344 29283344 G A ADAP2 Missense_Mutation p.G323E 0.31 tolerated(0.08) probably_damaging(0.977) TCGA-YD-A89C-06 17 29758858 29758858 C T RAB11FIP4 Missense_Mutation p.P63S 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 17 3370741 3370741 C T SPATA22 Missense_Mutation p.D51N 0.36 tolerated(0.11) benign(0.086) TCGA-YD-A89C-06 17 33771976 33771976 C T SLFN13 Missense_Mutation p.G242R 0.41 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 17 34499220 34499220 C T TBC1D3B Missense_Mutation p.G164E 0.12 deleterious(0) possibly_damaging(0.768) TCGA-YD-A89C-06 17 35512607 35512607 G A ACACA Silent p.S1815S 0.34 TCGA-YD-A89C-06 17 3593428 3593428 C T P2RX5 Missense_Mutation p.E184K 0.34 tolerated(0.55) benign(0.008) TCGA-YD-A89C-06 17 36357169 36357169 G A RP11-1407O15.2 Missense_Mutation p.L362F 0.09 TCGA-YD-A89C-06 17 37786251 37786251 C T PPP1R1B Silent p.L64L 0.36 TCGA-YD-A89C-06 17 38641194 38641194 G A TNS4 Missense_Mutation p.P452S 0.40 deleterious(0) possibly_damaging(0.908) TCGA-YD-A89C-06 17 39041119 39041119 C T KRT20 Missense_Mutation p.E107K 0.30 tolerated(0.18) benign(0.221) TCGA-YD-A89C-06 17 39305536 39305536 G A KRTAP4-5 Missense_Mutation p.R162C 0.21 unknown(0) TCGA-YD-A89C-06 17 39324131 39324131 G A KRTAP4-3 Silent p.T98T 0.22 TCGA-YD-A89C-06 17 39383028 39383028 C T KRTAP9-2 Missense_Mutation p.A41V 0.27 tolerated(0.13) unknown(0) TCGA-YD-A89C-06 17 39405989 39405989 C T KRTAP9-4 Missense_Mutation p.S6F 0.24 deleterious(0) unknown(0) TCGA-YD-A89C-06 17 39521715 39521715 C T KRT33B Missense_Mutation p.E227K 0.50 tolerated(0.06) benign(0.183) TCGA-YD-A89C-06 17 39674669 39674669 G A KRT15 Silent p.I137I 0.25 TCGA-YD-A89C-06 17 39766489 39766489 C T KRT16 Splice_Site p.X427_splice 0.43 TCGA-YD-A89C-06 17 40369418 40369418 G A STAT5B Missense_Mutation p.L412F 0.34 deleterious(0.01) benign(0.022) TCGA-YD-A89C-06 17 40843243 40843243 C T CNTNAP1 Silent p.A716A 0.32 TCGA-YD-A89C-06 17 40948593 40948593 G A WNK4 Silent p.R1242R 0.45 TCGA-YD-A89C-06 17 43332604 43332604 C T SPATA32 Silent p.K315K 0.34 TCGA-YD-A89C-06 17 43363810 43363810 G A MAP3K14 RNA 0.50 TCGA-YD-A89C-06 17 43922446 43922446 C T SPPL2C Silent p.L58L 0.32 TCGA-YD-A89C-06 17 45368498 45368498 G A ITGB3 Intron 0.46 TCGA-YD-A89C-06 17 46620640 46620640 G A HOXB2 Silent p.P287P 0.31 TCGA-YD-A89C-06 17 47243492 47243492 G A B4GALNT2 Missense_Mutation p.R384K 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 17 48276798 48276798 G C COL1A1 Missense_Mutation p.T117S 0.33 unknown(0) TCGA-YD-A89C-06 17 48734092 48734092 C T ABCC3 Silent p.S84S 0.38 TCGA-YD-A89C-06 17 4927049 4927049 C T KIF1C Missense_Mutation p.P972L 0.46 tolerated_low_confidence(0.07) possibly_damaging(0.908) TCGA-YD-A89C-06 17 5086976 5086976 G A ZNF594 Silent p.F192F 0.37 TCGA-YD-A89C-06 17 51900463 51900463 C T KIF2B Silent p.F23F 0.36 TCGA-YD-A89C-06 17 51902393 51902393 C T KIF2B Missense_Mutation p.H667Y 0.32 deleterious_low_confidence(0) benign(0.087) TCGA-YD-A89C-06 17 5424251 5424251 G A NLRP1 Missense_Mutation p.R1289C 0.33 deleterious(0.02) probably_damaging(0.972) TCGA-YD-A89C-06 17 5462907 5462907 C T NLRP1 Missense_Mutation p.R370K 0.39 tolerated(0.08) probably_damaging(0.951) TCGA-YD-A89C-06 17 56387364 56387364 C T BZRAP1 Silent p.Q1285Q 0.33 TCGA-YD-A89C-06 17 57287880 57287880 C T SMG8 Silent p.I156I 0.43 TCGA-YD-A89C-06 17 57290195 57290195 C T SMG8 Missense_Mutation p.P671S 0.42 tolerated(0.26) benign(0.033) TCGA-YD-A89C-06 17 57292385 57292385 C T SMG8 3'UTR 0.47 TCGA-YD-A89C-06 17 58288805 58288805 C T USP32 Silent p.Q750Q 0.35 TCGA-YD-A89C-06 17 60788648 60788648 C A MARCH10 Nonsense_Mutation p.E758* 0.33 TCGA-YD-A89C-06 17 61611390 61611390 C T KCNH6 Silent p.F273F 0.31 TCGA-YD-A89C-06 17 62020211 62020211 G A SCN4A Silent p.F1421F 0.40 TCGA-YD-A89C-06 17 62788619 62788619 G A PLEKHM1P RNA 0.37 TCGA-YD-A89C-06 17 63198130 63198130 G A RGS9 Nonsense_Mutation p.W332* 0.36 TCGA-YD-A89C-06 17 65344706 65344706 C T PSMD12 Missense_Mutation p.G157D 0.32 deleterious(0) possibly_damaging(0.847) TCGA-YD-A89C-06 17 66042003 66042003 C T KPNA2 Missense_Mutation p.S488L 0.32 deleterious(0.02) benign(0.038) TCGA-YD-A89C-06 17 66533506 66533506 C T FAM20A 3'UTR 0.48 TCGA-YD-A89C-06 17 6683988 6683988 C T FBXO39 Silent p.V267V 0.34 TCGA-YD-A89C-06 17 7004831 7004831 C T ASGR2 3'UTR 0.42 TCGA-YD-A89C-06 17 70645387 70645387 C T SLC39A11 Missense_Mutation p.G238E 0.48 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 17 71231697 71231697 C T C17orf80 Missense_Mutation p.P26S 0.36 deleterious(0) probably_damaging(0.991) TCGA-YD-A89C-06 17 7224240 7224240 G A NEURL4 Silent p.G1121G 0.43 TCGA-YD-A89C-06 17 7230499 7230499 G A NEURL4 Missense_Mutation p.L260F 0.50 tolerated(0.11) benign(0.076) TCGA-YD-A89C-06 17 72608790 72608790 C T CD300E 3'UTR 0.38 TCGA-YD-A89C-06 17 73282743 73282743 G A SLC25A19 Missense_Mutation p.P35S 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 17 73517860 73517860 C T TSEN54 Missense_Mutation p.P233L 0.53 tolerated(0.41) benign(0.004) TCGA-YD-A89C-06 17 7351949 7351949 C T CHRNB1 Missense_Mutation p.P221L 0.34 tolerated(0.12) benign(0.016) TCGA-YD-A89C-06 17 73569281 73569281 C T LLGL2 Missense_Mutation p.P883S 0.41 tolerated(0.15) benign(0.15) TCGA-YD-A89C-06 17 7357739 7357739 C T CHRNB1 Missense_Mutation p.T315I 0.33 tolerated(0.31) possibly_damaging(0.808) TCGA-YD-A89C-06 17 73661207 73661207 G A RECQL5 Missense_Mutation p.S59F 0.31 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 17 7384839 7384839 G A SLC35G6 Splice_Site p.X1_splice 0.36 TCGA-YD-A89C-06 17 7399321 7399321 C T POLR2A Missense_Mutation p.P52L 0.48 probably_damaging(0.996) TCGA-YD-A89C-06 17 74141273 74141273 G C RNF157 3'UTR 0.29 TCGA-YD-A89C-06 17 7579473 7579473 G A TP53 Missense_Mutation p.P72S 0.32 tolerated(0.8) benign(0.002) TCGA-YD-A89C-06 17 7579474 7579474 G A TP53 Silent p.P71P 0.32 TCGA-YD-A89C-06 17 76814809 76814809 G A USP36 Silent p.S321S 0.38 TCGA-YD-A89C-06 17 77711736 77711736 G A ENPP7 Missense_Mutation p.G423E 0.40 tolerated_low_confidence(0.71) benign(0.038) TCGA-YD-A89C-06 17 78059886 78059886 C T CCDC40 Nonsense_Mutation p.Q774* 0.40 TCGA-YD-A89C-06 17 78314040 78314040 C T RNF213 Missense_Mutation p.A1958V 0.39 benign(0.011) TCGA-YD-A89C-06 17 78857589 78857589 C T RPTOR Silent p.C553C 0.34 TCGA-YD-A89C-06 17 79278714 79278714 G A LINC00482 RNA 0.43 TCGA-YD-A89C-06 17 7950613 7950613 G A ALOX15B Missense_Mutation p.D499N 0.35 tolerated(0.07) benign(0.239) TCGA-YD-A89C-06 17 80333117 80333117 G A UTS2R Missense_Mutation p.G306D 0.30 deleterious(0) probably_damaging(0.952) TCGA-YD-A89C-06 17 80685054 80685054 C T FN3KRP 3'UTR 0.38 TCGA-YD-A89C-06 17 8215683 8215683 C T ARHGEF15 Missense_Mutation p.S109F 0.41 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-YD-A89C-06 17 8285614 8285614 G A RPL26 Silent p.P5P 0.30 TCGA-YD-A89C-06 17 8783947 8783947 G A PIK3R5 3'UTR 0.40 TCGA-YD-A89C-06 17 9515675 9515675 G A WDR16 Missense_Mutation p.G302R 0.28 deleterious(0.02) possibly_damaging(0.781) TCGA-YD-A89C-06 18 10680289 10680289 C T PIEZO2 Nonsense_Mutation p.W2507* 0.42 TCGA-YD-A89C-06 18 13671960 13671960 G A FAM210A Silent p.V162V 0.41 TCGA-YD-A89C-06 18 13826278 13826278 G A MC5R Missense_Mutation p.G172S 0.43 tolerated(0.17) benign(0.063) TCGA-YD-A89C-06 18 14105873 14105873 T G ZNF519 Silent p.S222S 0.32 TCGA-YD-A89C-06 18 14105874 14105874 G A ZNF519 Missense_Mutation p.S222L 0.32 deleterious(0.03) benign(0.132) TCGA-YD-A89C-06 18 15323255 15323255 C T RNU6-721P 5'Flank 0.21 TCGA-YD-A89C-06 18 15323329 15323329 C T RNU6-721P 5'Flank 0.23 TCGA-YD-A89C-06 18 21703854 21703854 C T TTC39C Nonsense_Mutation p.Q415* 0.25 TCGA-YD-A89C-06 18 22807555 22807555 C T ZNF521 Silent p.E109E 0.29 TCGA-YD-A89C-06 18 22901992 22901992 A T ZNF521 Missense_Mutation p.I67N 0.37 tolerated_low_confidence(0.09) benign(0) TCGA-YD-A89C-06 18 25572653 25572653 G A CDH2 Missense_Mutation p.P437L 0.44 deleterious(0.03) possibly_damaging(0.893) TCGA-YD-A89C-06 18 25572654 25572654 G A CDH2 Missense_Mutation p.P437S 0.44 deleterious(0) possibly_damaging(0.669) TCGA-YD-A89C-06 18 2707626 2707626 C T SMCHD1 Missense_Mutation p.P710L 0.35 tolerated(0.2) benign(0.006) TCGA-YD-A89C-06 18 28574047 28574047 C T DSC3 3'UTR 0.40 TCGA-YD-A89C-06 18 28720030 28720030 C T DSC1 Missense_Mutation p.E499K 0.44 deleterious(0) possibly_damaging(0.744) TCGA-YD-A89C-06 18 28991393 28991393 G A DSG4 Silent p.L798L 0.37 TCGA-YD-A89C-06 18 29850259 29850259 G A GAREM Missense_Mutation p.R552C 0.38 tolerated(0.08) possibly_damaging(0.902) TCGA-YD-A89C-06 18 30275460 30275460 G A KLHL14 Silent p.F375F 0.41 TCGA-YD-A89C-06 18 31324654 31324654 G A ASXL3 Missense_Mutation p.M1614I 0.30 benign(0.008) TCGA-YD-A89C-06 18 346928 346928 G A COLEC12 Nonsense_Mutation p.Q232* 0.36 TCGA-YD-A89C-06 18 40857381 40857381 G A SYT4 5'UTR 0.30 TCGA-YD-A89C-06 18 43534885 43534885 A G EPG5 Silent p.S161S 0.30 TCGA-YD-A89C-06 18 44559339 44559339 C T TCEB3B 3'UTR 0.40 TCGA-YD-A89C-06 18 47101958 47101958 G A LIPG Missense_Mutation p.G264E 0.35 tolerated(0.06) probably_damaging(1) TCGA-YD-A89C-06 18 50731724 50731724 G A DCC Missense_Mutation p.G571E 0.35 tolerated(0.14) possibly_damaging(0.474) TCGA-YD-A89C-06 18 52571623 52571623 G A CCDC68 Missense_Mutation p.S325F 0.28 deleterious(0) possibly_damaging(0.658) TCGA-YD-A89C-06 18 53070706 53070706 T A TCF4 Silent p.S218S 0.38 TCGA-YD-A89C-06 18 55024487 55024487 G A ST8SIA3 Missense_Mutation p.E216K 0.36 possibly_damaging(0.831) TCGA-YD-A89C-06 18 56203470 56203470 C T ALPK2 Missense_Mutation p.E1317K 0.39 tolerated(0.48) benign(0.007) TCGA-YD-A89C-06 18 56205277 56205277 G A ALPK2 Silent p.T714T 0.43 TCGA-YD-A89C-06 18 57106807 57106807 G A CCBE1 Missense_Mutation p.P307S 0.35 tolerated(0.05) probably_damaging(0.958) TCGA-YD-A89C-06 18 580607 580607 G A CETN1 Missense_Mutation p.E67K 0.44 deleterious(0.03) benign(0.196) TCGA-YD-A89C-06 18 61570447 61570447 C T SERPINB2 Missense_Mutation p.P386S 0.40 tolerated(0.21) probably_damaging(0.91) TCGA-YD-A89C-06 18 61654400 61654400 C T SERPINB8 Missense_Mutation p.S338F 0.41 tolerated(0.82) benign(0.008) TCGA-YD-A89C-06 18 64239253 64239253 G A CDH19 Silent p.I63I 0.28 TCGA-YD-A89C-06 18 72250867 72250867 C T CNDP1 Silent p.I460I 0.23 TCGA-YD-A89C-06 18 74962945 74962945 G A GALR1 Silent p.R147R 0.39 TCGA-YD-A89C-06 18 76754786 76754786 C T SALL3 Missense_Mutation p.P932L 0.53 tolerated(0.11) benign(0.006) TCGA-YD-A89C-06 18 9887763 9887763 C T TXNDC2 Silent p.S429S 0.42 TCGA-YD-A89C-06 18 9954245 9954245 T A VAPA 3'UTR 0.30 TCGA-YD-A89C-06 19 1010809 1010809 G A TMEM259 Missense_Mutation p.P468L 0.33 tolerated(0.44) benign(0.229) TCGA-YD-A89C-06 19 10561318 10561318 C T PDE4A Silent p.A220A 0.36 TCGA-YD-A89C-06 19 1074212 1074212 C T HMHA1 Silent p.I316I 0.32 TCGA-YD-A89C-06 19 110784 110784 C T OR4F17 Missense_Mutation p.L36F 0.10 tolerated(0.16) possibly_damaging(0.786) TCGA-YD-A89C-06 19 11406892 11406892 T G TSPAN16 5'UTR 0.33 TCGA-YD-A89C-06 19 11569074 11569074 C T ELAVL3 Missense_Mutation p.R172H 0.32 deleterious(0.02) possibly_damaging(0.757) TCGA-YD-A89C-06 19 11915421 11915421 C T ZNF491 5'UTR 0.40 TCGA-YD-A89C-06 19 1235904 1235904 G A C19orf26 Missense_Mutation p.P40L 0.30 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-YD-A89C-06 19 13340895 13340895 C T CACNA1A Splice_Site p.X1843_splice 0.55 TCGA-YD-A89C-06 19 13365936 13365936 G A CACNA1A Silent p.A1576A 0.52 TCGA-YD-A89C-06 19 1390971 1390971 C T NDUFS7 Silent p.F110F 0.36 TCGA-YD-A89C-06 19 13928134 13928134 C T ZSWIM4 Missense_Mutation p.R429C 0.36 deleterious(0.03) unknown(0) TCGA-YD-A89C-06 19 14703168 14703168 C T CLEC17A Missense_Mutation p.P92L 0.26 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 19 15726546 15726546 C T AD000091.2 5'Flank 0.23 TCGA-YD-A89C-06 19 15806872 15806872 C T CYP4F12 Silent p.I414I 0.40 TCGA-YD-A89C-06 19 16045069 16045069 A T CYP4F11 Nonsense_Mutation p.C50* 0.40 TCGA-YD-A89C-06 19 16045070 16045070 C T CYP4F11 Missense_Mutation p.C50Y 0.42 deleterious(0.03) benign(0.013) TCGA-YD-A89C-06 19 16918757 16918757 T G NWD1 Missense_Mutation p.M1366R 0.38 deleterious(0.01) possibly_damaging(0.642) TCGA-YD-A89C-06 19 17922908 17922908 G A B3GNT3 Missense_Mutation p.G366S 0.37 tolerated(0.21) benign(0.039) TCGA-YD-A89C-06 19 17922909 17922909 G A B3GNT3 Missense_Mutation p.G366D 0.39 tolerated(0.12) benign(0.059) TCGA-YD-A89C-06 19 18274194 18274194 C T PIK3R2 Missense_Mutation p.S471F 0.23 deleterious(0) probably_damaging(0.978) TCGA-YD-A89C-06 19 18286015 18286015 C T IFI30 Missense_Mutation p.P100S 0.31 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 19 18376897 18376897 G A KIAA1683 Missense_Mutation p.P485S 0.35 tolerated(0.06) benign(0.067) TCGA-YD-A89C-06 19 18779938 18779938 C T KLHL26 Silent p.I577I 0.42 TCGA-YD-A89C-06 19 18893937 18893937 C T COMP Silent p.R718R 0.37 TCGA-YD-A89C-06 19 19115366 19115366 G A SUGP2 Missense_Mutation p.P847L 0.24 deleterious(0) possibly_damaging(0.55) TCGA-YD-A89C-06 19 19737779 19737779 G A LPAR2 Silent p.F105F 0.36 TCGA-YD-A89C-06 19 20727692 20727692 G A ZNF737 Silent p.I439I 0.36 TCGA-YD-A89C-06 19 21131762 21131762 T G ZNF85 Missense_Mutation p.C148G 0.43 deleterious(0) benign(0.167) TCGA-YD-A89C-06 19 21607548 21607548 G A ZNF493 Missense_Mutation p.R696Q 0.40 tolerated(0.59) benign(0.03) TCGA-YD-A89C-06 19 21608535 21608535 C T ZNF493 3'UTR 0.64 TCGA-YD-A89C-06 19 22157579 22157579 C A ZNF208 Missense_Mutation p.W86L 0.30 tolerated(0.78) benign(0.019) TCGA-YD-A89C-06 19 22363472 22363472 G A ZNF676 Silent p.S349S 0.30 TCGA-YD-A89C-06 19 2243433 2243433 C T SF3A2 Missense_Mutation p.R6C 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.717) TCGA-YD-A89C-06 19 2425982 2425982 G A TMPRSS9 Missense_Mutation p.G1026R 0.39 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 19 30165590 30165590 C T PLEKHF1 3'UTR 0.38 TCGA-YD-A89C-06 19 30934664 30934664 G A ZNF536 Silent p.E65E 0.32 TCGA-YD-A89C-06 19 31039782 31039782 G A ZNF536 Missense_Mutation p.E1086K 0.35 deleterious_low_confidence(0.03) benign(0.345) TCGA-YD-A89C-06 19 3180100 3180100 C T S1PR4 3'UTR 0.44 TCGA-YD-A89C-06 19 35450174 35450174 A T ZNF792 Silent p.A195A 0.39 TCGA-YD-A89C-06 19 3557318 3557318 G A MFSD12 Silent p.G28G 0.21 TCGA-YD-A89C-06 19 36279035 36279035 C T ARHGAP33 Missense_Mutation p.P1029S 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-YD-A89C-06 19 36339602 36339602 C T NPHS1 Silent p.R369R 0.19 TCGA-YD-A89C-06 19 36435458 36435458 C T LRFN3 Missense_Mutation p.P475L 0.67 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 19 36940859 36940859 C T ZNF566 Missense_Mutation p.E94K 0.32 tolerated(0.08) probably_damaging(0.937) TCGA-YD-A89C-06 19 3738902 3738902 G A TJP3 Nonsense_Mutation p.W476* 0.47 TCGA-YD-A89C-06 19 3762664 3762664 G A MRPL54 5'UTR 0.37 TCGA-YD-A89C-06 19 3762665 3762665 G A MRPL54 5'UTR 0.37 TCGA-YD-A89C-06 19 38818079 38818079 C T KCNK6 3'UTR 0.32 TCGA-YD-A89C-06 19 38937192 38937192 G A RYR1 Missense_Mutation p.D238N 0.35 possibly_damaging(0.475) TCGA-YD-A89C-06 19 38990422 38990422 G A RYR1 Missense_Mutation p.R2392K 0.39 benign(0.017) TCGA-YD-A89C-06 19 3905551 3905551 G A ATCAY Missense_Mutation p.D86N 0.39 deleterious(0.01) probably_damaging(0.936) TCGA-YD-A89C-06 19 39421443 39421443 G A SARS2 5'Flank 0.31 TCGA-YD-A89C-06 19 39516063 39516063 G A FBXO27 Silent p.V280V 0.26 TCGA-YD-A89C-06 19 39592120 39592120 C T PAPL Silent p.S352S 0.31 TCGA-YD-A89C-06 19 39976908 39976908 A T TIMM50 Missense_Mutation p.I295F 0.41 deleterious(0.01) possibly_damaging(0.503) TCGA-YD-A89C-06 19 40357530 40357530 G A FCGBP Silent p.L5261L 0.29 TCGA-YD-A89C-06 19 40398496 40398496 G A FCGBP Silent p.F2157F 0.11 TCGA-YD-A89C-06 19 4054254 4054254 G A ZBTB7A Missense_Mutation p.S326L 0.67 deleterious(0) possibly_damaging(0.632) TCGA-YD-A89C-06 19 40873668 40873668 C T PLD3 Missense_Mutation p.S104F 0.46 deleterious(0.01) probably_damaging(0.913) TCGA-YD-A89C-06 19 40873669 40873669 C T PLD3 Silent p.S104S 0.44 TCGA-YD-A89C-06 19 40903306 40903306 G A PRX Missense_Mutation p.A318V 0.50 tolerated(0.06) possibly_damaging(0.682) TCGA-YD-A89C-06 19 41744044 41744044 G A AXL Missense_Mutation p.E327K 0.35 tolerated(0.17) benign(0.003) TCGA-YD-A89C-06 19 42352906 42352906 C T DMRTC2 Missense_Mutation p.S164L 0.32 tolerated(1) benign(0) TCGA-YD-A89C-06 19 42728914 42728914 C T ZNF526 Missense_Mutation p.P120L 0.36 deleterious(0.04) benign(0.356) TCGA-YD-A89C-06 19 43433714 43433714 C T PSG7 Missense_Mutation p.E197K 0.40 tolerated(0.94) benign(0.002) TCGA-YD-A89C-06 19 434845 434845 G A SHC2 Missense_Mutation p.S325L 0.33 tolerated(0.12) benign(0.005) TCGA-YD-A89C-06 19 43680066 43680066 C T PSG5 Missense_Mutation p.R222Q 0.38 deleterious(0.04) benign(0.015) TCGA-YD-A89C-06 19 43680219 43680219 G A PSG5 Missense_Mutation p.P171L 0.38 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 19 44096313 44096313 G A IRGQ Silent p.F579F 0.29 TCGA-YD-A89C-06 19 44111841 44111841 T A ZNF428 Missense_Mutation p.E165D 0.52 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-YD-A89C-06 19 44892176 44892176 C T ZNF285 Nonsense_Mutation p.W77* 0.30 TCGA-YD-A89C-06 19 4510539 4510539 C T PLIN4 Missense_Mutation p.E1131K 0.22 tolerated(0.13) benign(0.041) TCGA-YD-A89C-06 19 45448440 45448440 G A APOC4 Missense_Mutation p.D88N 0.33 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 19 46124777 46124777 G A EML2 Silent p.L521L 0.42 TCGA-YD-A89C-06 19 47570583 47570583 G A ZC3H4 Missense_Mutation p.P981L 0.36 unknown(0) TCGA-YD-A89C-06 19 48248803 48248803 C T GLTSCR2 5'UTR 0.35 TCGA-YD-A89C-06 19 48800657 48800657 G A CCDC114 Missense_Mutation p.T530I 0.35 tolerated(0.05) benign(0.169) TCGA-YD-A89C-06 19 48967927 48967927 G A KCNJ14 Missense_Mutation p.E402K 0.26 tolerated(0.15) benign(0.349) TCGA-YD-A89C-06 19 49090523 49090523 G A SULT2B1 Silent p.L84L 0.28 TCGA-YD-A89C-06 19 49303324 49303324 G A BCAT2 Missense_Mutation p.R149C 0.27 tolerated(0.27) benign(0.028) TCGA-YD-A89C-06 19 49348646 49348646 G A PLEKHA4 Missense_Mutation p.S575F 0.23 deleterious(0) probably_damaging(0.959) TCGA-YD-A89C-06 19 49384237 49384237 G A TULP2 3'UTR 0.33 TCGA-YD-A89C-06 19 49540018 49540018 G A CGB1 5'UTR 0.53 TCGA-YD-A89C-06 19 50185254 50185254 G A PRMT1 Missense_Mutation p.D94N 0.42 deleterious(0) possibly_damaging(0.808) TCGA-YD-A89C-06 19 51410038 51410038 G A KLK4 3'UTR 0.50 TCGA-YD-A89C-06 19 51446941 51446941 C T KLK5 Silent p.T276T 0.38 TCGA-YD-A89C-06 19 51518120 51518120 G A KLK10 Missense_Mutation p.P256L 0.41 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 19 51649120 51649120 G A SIGLEC7 Missense_Mutation p.A257T 0.37 tolerated(0.6) benign(0.015) TCGA-YD-A89C-06 19 51914323 51914323 G A SIGLEC10 3'UTR 0.36 TCGA-YD-A89C-06 19 51986533 51986533 G A CEACAM18 Silent p.R373R 0.30 TCGA-YD-A89C-06 19 51986592 51986592 C T CEACAM18 Missense_Mutation p.P393L 0.28 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-YD-A89C-06 19 52469126 52469126 G A ZNF350 Missense_Mutation p.P194S 0.30 tolerated(0.52) benign(0.146) TCGA-YD-A89C-06 19 54312966 54312966 G A NLRP12 Silent p.V649V 0.43 TCGA-YD-A89C-06 19 54327451 54327451 G A NLRP12 5'UTR 0.45 TCGA-YD-A89C-06 19 54782147 54782147 G A LILRB2 Missense_Mutation p.H409Y 0.36 tolerated(0.65) possibly_damaging(0.52) TCGA-YD-A89C-06 19 55106632 55106632 C T LILRA1 Silent p.T142T 0.29 TCGA-YD-A89C-06 19 55144686 55144686 G A LILRB1 Missense_Mutation p.G393E 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-YD-A89C-06 19 55144687 55144687 G A LILRB1 Silent p.G393G 0.30 TCGA-YD-A89C-06 19 55247318 55247318 G A KIR3DL3 Silent p.G362G 0.70 TCGA-YD-A89C-06 19 55331355 55331355 C T KIR3DL1 Silent p.S181S 0.33 TCGA-YD-A89C-06 19 55340886 55340886 C T KIR3DL1 Silent p.F357F 0.42 TCGA-YD-A89C-06 19 55378036 55378036 C T KIR3DL2 Silent p.F406F 0.29 TCGA-YD-A89C-06 19 55399628 55399628 T G FCAR Missense_Mutation p.F206V 0.32 tolerated(0.35) benign(0.065) TCGA-YD-A89C-06 19 55401049 55401049 G A FCAR Silent p.L228L 0.37 TCGA-YD-A89C-06 19 55451134 55451134 C T NLRP7 Silent p.R351R 0.15 TCGA-YD-A89C-06 19 55481377 55481377 G A NLRP2 5'UTR 0.42 TCGA-YD-A89C-06 19 55494224 55494224 G A NLRP2 Silent p.R386R 0.23 TCGA-YD-A89C-06 19 55512153 55512153 G A NLRP2 Missense_Mutation p.E1026K 0.32 tolerated(0.27) benign(0.032) TCGA-YD-A89C-06 19 55672755 55672757 CGT - DNAAF3 In_Frame_Del p.R300del 0.37 TCGA-YD-A89C-06 19 56047418 56047418 G A SBK2 Missense_Mutation p.R82C 0.35 deleterious(0.04) benign(0.057) TCGA-YD-A89C-06 19 56226562 56226562 G A NLRP9 Missense_Mutation p.S787F 0.55 deleterious(0) possibly_damaging(0.646) TCGA-YD-A89C-06 19 56329306 56329306 C T NLRP11 Missense_Mutation p.E79K 0.41 tolerated(1) benign(0.002) TCGA-YD-A89C-06 19 56373520 56373520 G A NLRP4 Silent p.E727E 0.38 TCGA-YD-A89C-06 19 56388459 56388459 G A NLRP4 Missense_Mutation p.E875K 0.41 tolerated(1) benign(0.017) TCGA-YD-A89C-06 19 56424641 56424641 C T NLRP13 Missense_Mutation p.R181K 0.37 deleterious(0.05) probably_damaging(0.978) TCGA-YD-A89C-06 19 56459306 56459306 C T NLRP8 Missense_Mutation p.P13L 0.39 tolerated_low_confidence(0.25) possibly_damaging(0.713) TCGA-YD-A89C-06 19 56515263 56515263 G A NLRP5 Missense_Mutation p.E82K 0.44 tolerated(0.28) benign(0.016) TCGA-YD-A89C-06 19 57328111 57328111 C T PEG3 Missense_Mutation p.V567M 0.42 tolerated(0.08) benign(0.047) TCGA-YD-A89C-06 19 58152773 58152773 C T ZNF211 Missense_Mutation p.H372Y 0.38 deleterious(0) probably_damaging(0.972) TCGA-YD-A89C-06 19 58578388 58578388 C T ZNF135 Missense_Mutation p.P203L 0.40 tolerated(0.3) benign(0.124) TCGA-YD-A89C-06 19 58928341 58928341 C T ZNF584 Silent p.V152V 0.45 TCGA-YD-A89C-06 19 6586083 6586083 G T CD70 Missense_Mutation p.P177H 0.34 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 19 6940095 6940095 C T EMR1 3'UTR 0.58 TCGA-YD-A89C-06 19 6974614 6974614 C T EMR4P RNA 0.39 TCGA-YD-A89C-06 19 8152770 8152770 G A FBN3 Silent p.G2186G 0.39 TCGA-YD-A89C-06 19 8438721 8438721 A G ANGPTL4 Missense_Mutation p.Q391R 0.40 tolerated(0.17) benign(0.044) TCGA-YD-A89C-06 19 8619567 8619567 C T MYO1F Missense_Mutation p.D68N 0.26 deleterious(0.01) benign(0.305) TCGA-YD-A89C-06 19 8620593 8620593 C T MYO1F Missense_Mutation p.D31N 0.33 tolerated(0.12) benign(0.02) TCGA-YD-A89C-06 19 8620594 8620594 T A MYO1F Missense_Mutation p.E30D 0.32 tolerated(0.07) possibly_damaging(0.651) TCGA-YD-A89C-06 19 8808831 8808831 G A ACTL9 Missense_Mutation p.T74I 0.39 tolerated(0.44) probably_damaging(0.955) TCGA-YD-A89C-06 19 8842201 8842201 G A OR2Z1 Missense_Mutation p.D271N 0.38 deleterious(0.01) benign(0.255) TCGA-YD-A89C-06 19 8996478 8996478 C T MUC16 Silent p.G13698G 0.18 TCGA-YD-A89C-06 19 9005597 9005597 C T MUC16 Missense_Mutation p.G13270E 0.28 probably_damaging(1) TCGA-YD-A89C-06 19 9008245 9008245 G A MUC16 Silent p.L13103L 0.37 TCGA-YD-A89C-06 19 9024949 9024949 G A MUC16 Missense_Mutation p.R12305C 0.46 probably_damaging(0.923) TCGA-YD-A89C-06 19 9048086 9048086 G A MUC16 Missense_Mutation p.S11182L 0.30 possibly_damaging(0.504) TCGA-YD-A89C-06 19 9056249 9056249 G C MUC16 Silent p.T10399T 0.23 TCGA-YD-A89C-06 19 9056544 9056544 G A MUC16 Missense_Mutation p.S10301L 0.39 possibly_damaging(0.504) TCGA-YD-A89C-06 19 9059409 9059409 G A MUC16 Missense_Mutation p.S9346F 0.39 unknown(0) TCGA-YD-A89C-06 19 9060255 9060255 C T MUC16 Missense_Mutation p.R9064K 0.34 unknown(0) TCGA-YD-A89C-06 19 9061149 9061149 G A MUC16 Missense_Mutation p.S8766F 0.41 unknown(0) TCGA-YD-A89C-06 19 9068839 9068839 C T MUC16 Missense_Mutation p.D6203N 0.32 unknown(0) TCGA-YD-A89C-06 19 9069594 9069594 G A MUC16 Missense_Mutation p.P5951L 0.43 unknown(0) TCGA-YD-A89C-06 19 9071745 9071745 G A MUC16 Missense_Mutation p.S5234F 0.27 unknown(0) TCGA-YD-A89C-06 19 9071811 9071811 G A MUC16 Missense_Mutation p.S5212F 0.35 unknown(0) TCGA-YD-A89C-06 19 9074006 9074006 A T MUC16 Silent p.V4480V 0.37 TCGA-YD-A89C-06 19 9082832 9082832 G A MUC16 Missense_Mutation p.P2995S 0.39 unknown(0) TCGA-YD-A89C-06 19 9086233 9086233 G A MUC16 Missense_Mutation p.T1861I 0.43 unknown(0) TCGA-YD-A89C-06 19 9088160 9088160 G A MUC16 Missense_Mutation p.P1219S 0.41 unknown(0) TCGA-YD-A89C-06 19 9091753 9091753 C T MUC16 Missense_Mutation p.S21N 0.38 unknown(0) TCGA-YD-A89C-06 19 9577721 9577721 C T ZNF560 Silent p.G634G 0.33 TCGA-YD-A89C-06 19 9868796 9868796 G A ZNF846 Silent p.F319F 0.38 TCGA-YD-A89C-06 1 100316590 100316590 G A AGL 5'UTR 0.41 TCGA-YD-A89C-06 1 100347156 100347156 C T AGL Silent p.I739I 0.32 TCGA-YD-A89C-06 1 100696418 100696418 G A DBT Nonsense_Mutation p.Q102* 0.31 TCGA-YD-A89C-06 1 103352498 103352498 C T COL11A1 Missense_Mutation p.G1575R 0.41 unknown(0) TCGA-YD-A89C-06 1 103364302 103364302 C T COL11A1 Missense_Mutation p.G1390R 0.37 unknown(0) TCGA-YD-A89C-06 1 10705139 10705139 C T CASZ1 Missense_Mutation p.E1235K 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-YD-A89C-06 1 107691249 107691249 C T NTNG1 Missense_Mutation p.L12F 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.899) TCGA-YD-A89C-06 1 109377597 109377597 G A AKNAD1 Missense_Mutation p.P540S 0.40 tolerated(0.67) benign(0.001) TCGA-YD-A89C-06 1 109779137 109779137 C T SARS Silent p.I408I 0.31 TCGA-YD-A89C-06 1 109795625 109795625 C T CELSR2 Missense_Mutation p.S975F 0.36 deleterious(0) probably_damaging(0.986) TCGA-YD-A89C-06 1 109805494 109805494 C T CELSR2 Silent p.V1537V 0.40 TCGA-YD-A89C-06 1 110257665 110257665 G A GSTM5 Splice_Site p.X152_splice 0.35 TCGA-YD-A89C-06 1 111060687 111060687 G A KCNA10 Silent p.F241F 0.39 TCGA-YD-A89C-06 1 111957724 111957724 G A OVGP1 Silent p.L467L 0.33 TCGA-YD-A89C-06 1 112525100 112525100 G A KCND3 Silent p.F83F 0.36 TCGA-YD-A89C-06 1 114429192 114429192 G A BCL2L15 Silent p.A72A 0.35 TCGA-YD-A89C-06 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.34 tolerated(0.06) benign(0.006) TCGA-YD-A89C-06 1 11562769 11562769 C T PTCHD2 Silent p.F377F 0.37 TCGA-YD-A89C-06 1 117487546 117487546 C T PTGFRN Missense_Mutation p.L222F 0.57 deleterious(0.02) benign(0.331) TCGA-YD-A89C-06 1 117560050 117560050 G C CD101 Missense_Mutation p.D523H 0.44 deleterious(0.01) possibly_damaging(0.906) TCGA-YD-A89C-06 1 119958175 119958175 G A HSD3B2 Missense_Mutation p.E45K 0.29 tolerated(0.19) benign(0.168) TCGA-YD-A89C-06 1 120437729 120437729 C T ADAM30 Missense_Mutation p.E411K 0.44 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 1 12071716 12071716 C T MFN2 3'UTR 0.15 TCGA-YD-A89C-06 1 12423156 12423156 C T VPS13D Missense_Mutation p.S3434F 0.39 probably_damaging(0.991) TCGA-YD-A89C-06 1 12438564 12438564 C T VPS13D Missense_Mutation p.P3667L 0.34 probably_damaging(0.917) TCGA-YD-A89C-06 1 12711318 12711318 C T AADACL4 Silent p.I115I 0.45 TCGA-YD-A89C-06 1 12726576 12726576 G A AADACL4 Missense_Mutation p.D352N 0.41 tolerated(0.06) probably_damaging(0.987) TCGA-YD-A89C-06 1 12785710 12785710 C T AADACL3 Missense_Mutation p.S267L 0.26 deleterious(0.01) probably_damaging(0.955) TCGA-YD-A89C-06 1 12952762 12952762 G A PRAMEF10 Silent p.F470F 0.10 TCGA-YD-A89C-06 1 12955451 12955451 C T PRAMEF10 Silent p.E76E 0.36 TCGA-YD-A89C-06 1 13036403 13036403 G A PRAMEF22 Missense_Mutation p.E159K 0.32 tolerated(0.35) benign(0.046) TCGA-YD-A89C-06 1 144868155 144868155 G A PDE4DIP Missense_Mutation p.P1762S 0.12 tolerated(0.15) benign(0.072) TCGA-YD-A89C-06 1 144882816 144882816 G A PDE4DIP Missense_Mutation p.S1068F 0.18 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 1 145075012 145075012 G A PDE4DIP Silent p.F94F 0.07 TCGA-YD-A89C-06 1 145368583 145368583 C T NBPF10 Nonsense_Mutation p.Q3521* 0.11 TCGA-YD-A89C-06 1 147230317 147230317 G A GJA5 Missense_Mutation p.L344F 0.29 tolerated(0.33) unknown(0) TCGA-YD-A89C-06 1 148251745 148251745 G A NBPF20 3'UTR 0.28 TCGA-YD-A89C-06 1 149883495 149883495 G A SV2A Silent p.F220F 0.38 TCGA-YD-A89C-06 1 149884928 149884928 G A SV2A Silent p.I155I 0.30 TCGA-YD-A89C-06 1 149885167 149885167 C T SV2A Missense_Mutation p.E76K 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A89C-06 1 150525652 150525652 G A ADAMTSL4 Silent p.R119R 0.18 TCGA-YD-A89C-06 1 150525997 150525997 G C ADAMTSL4 Missense_Mutation p.S177T 0.15 tolerated(0.56) benign(0) TCGA-YD-A89C-06 1 150956491 150956491 G A ANXA9 Silent p.R71R 0.15 TCGA-YD-A89C-06 1 150970111 150970111 G A FAM63A Silent p.L488L 0.19 TCGA-YD-A89C-06 1 151065781 151065781 C T GABPB2 Silent p.V130V 0.12 TCGA-YD-A89C-06 1 151111143 151111143 C T SEMA6C Missense_Mutation p.G140E 0.30 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 1 152059344 152059344 G A TCHHL1 Missense_Mutation p.P272S 0.32 tolerated(0.06) possibly_damaging(0.786) TCGA-YD-A89C-06 1 152127555 152127555 G A RPTN Missense_Mutation p.H674Y 0.27 tolerated(0.23) benign(0.012) TCGA-YD-A89C-06 1 152188442 152188442 C T HRNR Missense_Mutation p.G1888E 0.10 unknown(0) TCGA-YD-A89C-06 1 152285233 152285233 G A FLG Missense_Mutation p.S710F 0.26 probably_damaging(0.993) TCGA-YD-A89C-06 1 152381915 152381915 C T CRNN 3'UTR 0.21 TCGA-YD-A89C-06 1 152733824 152733824 A C KPRP 3'UTR 0.22 TCGA-YD-A89C-06 1 152785323 152785323 C T LCE1B 3'UTR 0.27 TCGA-YD-A89C-06 1 153084874 153084874 G A SPRR2F 3'UTR 0.24 TCGA-YD-A89C-06 1 153122540 153122540 G A SPRR2G Missense_Mutation p.P16L 0.23 unknown(0) TCGA-YD-A89C-06 1 153279638 153279638 C T PGLYRP3 Missense_Mutation p.G54E 0.17 deleterious(0.01) benign(0.443) TCGA-YD-A89C-06 1 153430226 153430226 G A S100A7 3'UTR 0.60 TCGA-YD-A89C-06 1 153520164 153520164 G A S100A3 Silent p.S100S 0.23 TCGA-YD-A89C-06 1 153659127 153659127 G A NPR1 Silent p.R588R 0.26 TCGA-YD-A89C-06 1 154245208 154245208 C T HAX1 Silent p.L3L 0.27 TCGA-YD-A89C-06 1 154544179 154544179 G A CHRNB2 Missense_Mutation p.V294M 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-YD-A89C-06 1 154918801 154918801 G A PBXIP1 Missense_Mutation p.P450L 0.29 tolerated(0.1) benign(0.009) TCGA-YD-A89C-06 1 155258024 155258024 G A HCN3 Missense_Mutation p.G699R 0.31 tolerated_low_confidence(0.57) possibly_damaging(0.486) TCGA-YD-A89C-06 1 156035713 156035713 G A RAB25 Missense_Mutation p.G19S 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-YD-A89C-06 1 156351235 156351235 C T RHBG Silent p.S257S 0.68 TCGA-YD-A89C-06 1 156352340 156352340 G A RHBG Intron 0.40 TCGA-YD-A89C-06 1 156837974 156837974 A T NTRK1 Silent p.G169G 0.24 TCGA-YD-A89C-06 1 157068544 157068544 G A ETV3L Missense_Mutation p.P147L 0.31 deleterious(0.01) benign(0.154) TCGA-YD-A89C-06 1 157494225 157494225 G A FCRL5 Missense_Mutation p.H695Y 0.66 deleterious(0.03) possibly_damaging(0.6) TCGA-YD-A89C-06 1 157665285 157665285 G A FCRL3 Silent p.Y415Y 0.19 TCGA-YD-A89C-06 1 157771797 157771797 G A FCRL1 Missense_Mutation p.S265F 0.17 deleterious(0.01) probably_damaging(0.929) TCGA-YD-A89C-06 1 158368941 158368941 G A OR10T2 Missense_Mutation p.L106F 0.66 tolerated(0.09) possibly_damaging(0.701) TCGA-YD-A89C-06 1 158389833 158389833 G A OR10K2 Missense_Mutation p.S275L 0.23 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 1 158435677 158435677 C T OR10K1 Missense_Mutation p.S109F 0.56 tolerated(0.06) benign(0.003) TCGA-YD-A89C-06 1 158435834 158435834 C T OR10K1 Silent p.S161S 0.20 TCGA-YD-A89C-06 1 158576568 158576568 C T OR10Z1 Missense_Mutation p.L114F 0.30 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 1 158612333 158612333 C T SPTA1 Splice_Site p.X1536_splice 0.17 TCGA-YD-A89C-06 1 158746784 158746784 G A OR6N2 Silent p.I214I 0.16 TCGA-YD-A89C-06 1 158815515 158815515 C T MNDA Missense_Mutation p.H237Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 1 158986357 158986357 C T IFI16 Missense_Mutation p.P139L 0.21 deleterious(0.04) benign(0.016) TCGA-YD-A89C-06 1 159272203 159272203 T C FCER1A Missense_Mutation p.F17L 0.29 tolerated(1) benign(0.002) TCGA-YD-A89C-06 1 159283563 159283563 C T OR10J3 Missense_Mutation p.G296E 0.20 tolerated(1) benign(0.001) TCGA-YD-A89C-06 1 159803058 159803058 G A SLAMF8 Missense_Mutation p.G227E 0.24 deleterious(0.05) benign(0.071) TCGA-YD-A89C-06 1 160062389 160062389 G A IGSF8 Missense_Mutation p.P470L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A89C-06 1 160097601 160097601 C T ATP1A2 Silent p.A336A 0.20 TCGA-YD-A89C-06 1 16057172 16057172 C T PLEKHM2 Missense_Mutation p.S785F 0.19 deleterious(0.03) probably_damaging(0.966) TCGA-YD-A89C-06 1 160720164 160720164 C T SLAMF7 Silent p.L240L 0.28 TCGA-YD-A89C-06 1 16095061 16095061 C T FBLIM1 Silent p.L159L 0.36 TCGA-YD-A89C-06 1 161012410 161012410 G C USF1 Missense_Mutation p.Q37E 0.07 deleterious(0.01) possibly_damaging(0.585) TCGA-YD-A89C-06 1 161989849 161989849 C T OLFML2B Missense_Mutation p.E100K 0.30 deleterious(0) possibly_damaging(0.493) TCGA-YD-A89C-06 1 162040006 162040006 G A NOS1AP Silent p.G13G 0.24 TCGA-YD-A89C-06 1 162326814 162326814 C T NOS1AP Missense_Mutation p.S276L 0.20 tolerated(0.23) benign(0.003) TCGA-YD-A89C-06 1 165677817 165677817 C T RP11-466F5.10 5'Flank 0.25 TCGA-YD-A89C-06 1 165738081 165738081 C T TMCO1 Missense_Mutation p.G21S 0.33 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-YD-A89C-06 1 166039927 166039927 G A FAM78B Missense_Mutation p.P113S 0.23 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 1 166991017 166991017 C T MAEL Silent p.F410F 0.25 TCGA-YD-A89C-06 1 168550415 168550415 G A XCL1 Missense_Mutation p.G101E 0.21 tolerated(0.11) benign(0.043) TCGA-YD-A89C-06 1 169696958 169696958 C T SELE Missense_Mutation p.G464R 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 1 169701756 169701756 C T SELE Missense_Mutation p.A141T 0.27 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 1 17046501 17046501 C T ESPNP RNA 0.12 TCGA-YD-A89C-06 1 17085023 17085023 G A MST1L RNA 0.07 TCGA-YD-A89C-06 1 170955837 170955837 G A MROH9 Missense_Mutation p.E289K 0.57 tolerated(0.42) benign(0.145) TCGA-YD-A89C-06 1 171079999 171079999 C T FMO3 Missense_Mutation p.P230S 0.35 deleterious(0) probably_damaging(0.993) TCGA-YD-A89C-06 1 171310642 171310642 C T FMO4 Silent p.I447I 0.23 TCGA-YD-A89C-06 1 172501865 172501865 G A SUCO 5'Flank 0.32 TCGA-YD-A89C-06 1 17280732 17280732 G A CROCC Silent p.K1067K 0.18 TCGA-YD-A89C-06 1 173556831 173556831 G A SLC9C2 Missense_Mutation p.R166C 0.31 tolerated(0.17) possibly_damaging(0.759) TCGA-YD-A89C-06 1 17410311 17410311 G A PADI2 Silent p.F320F 0.31 TCGA-YD-A89C-06 1 17548836 17548836 G A PADI1 Silent p.V48V 0.30 TCGA-YD-A89C-06 1 176681011 176681011 C T PAPPA2 Missense_Mutation p.P1231L 0.27 tolerated(0.41) benign(0.002) TCGA-YD-A89C-06 1 177250143 177250143 C T BRINP2 Missense_Mutation p.P611S 0.28 deleterious(0.02) benign(0.091) TCGA-YD-A89C-06 1 177250287 177250287 G A BRINP2 Missense_Mutation p.E659K 0.23 deleterious(0.05) probably_damaging(0.985) TCGA-YD-A89C-06 1 177250796 177250796 C T BRINP2 3'UTR 0.29 TCGA-YD-A89C-06 1 178427480 178427480 G A RASAL2 Missense_Mutation p.G1018E 0.23 tolerated(0.46) benign(0.397) TCGA-YD-A89C-06 1 178820452 178820452 C T ANGPTL1 Splice_Site p.X430_splice 0.25 TCGA-YD-A89C-06 1 179380401 179380401 G A AXDND1 Silent p.K410K 0.24 TCGA-YD-A89C-06 1 179460696 179460696 G A AXDND1 Missense_Mutation p.M705I 0.24 deleterious(0.01) benign(0.009) TCGA-YD-A89C-06 1 179502972 179502972 G A AXDND1 Missense_Mutation p.E920K 0.19 deleterious(0) possibly_damaging(0.636) TCGA-YD-A89C-06 1 179631299 179631299 G A TDRD5 Missense_Mutation p.D795N 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 1 18023883 18023883 C T ARHGEF10L 3'UTR 0.46 TCGA-YD-A89C-06 1 181689423 181689423 C T CACNA1E Silent p.F611F 0.23 TCGA-YD-A89C-06 1 181765861 181765861 G A CACNA1E Missense_Mutation p.R2089Q 0.34 deleterious(0.02) possibly_damaging(0.614) TCGA-YD-A89C-06 1 182569621 182569621 G A RGS16 Silent p.L139L 0.18 TCGA-YD-A89C-06 1 183155505 183155505 G T LAMC2 Silent p.L6L 0.29 TCGA-YD-A89C-06 1 183155567 183155567 G A LAMC2 Splice_Site p.X27_splice 0.17 TCGA-YD-A89C-06 1 183513593 183513593 C T SMG7 Missense_Mutation p.H604Y 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-YD-A89C-06 1 183532369 183532369 C T NCF2 Silent p.V417V 0.20 TCGA-YD-A89C-06 1 183538297 183538297 C T NCF2 Silent p.P231P 0.18 TCGA-YD-A89C-06 1 1848044 1848044 G A CALML6 Silent p.V81V 0.21 TCGA-YD-A89C-06 1 184868341 184868341 C T FAM129A Missense_Mutation p.D53N 0.20 tolerated(0.06) possibly_damaging(0.464) TCGA-YD-A89C-06 1 186270759 186270759 G A PRG4 Missense_Mutation p.E79K 0.31 possibly_damaging(0.824) TCGA-YD-A89C-06 1 190424061 190424061 C T BRINP3 5'UTR 0.23 TCGA-YD-A89C-06 1 19166939 19166939 G A TAS1R2 Silent p.F558F 0.41 TCGA-YD-A89C-06 1 19166996 19166996 C T TAS1R2 Silent p.P539P 0.39 TCGA-YD-A89C-06 1 19175920 19175920 G A TAS1R2 Missense_Mutation p.P461L 0.47 deleterious(0.03) possibly_damaging(0.656) TCGA-YD-A89C-06 1 192153693 192153693 G A RGS18 3'UTR 0.17 TCGA-YD-A89C-06 1 196874289 196874289 C T CFHR4 Missense_Mutation p.S102F 0.24 deleterious(0.05) probably_damaging(0.976) TCGA-YD-A89C-06 1 197008438 197008438 C T F13B 3'UTR 0.18 TCGA-YD-A89C-06 1 197059425 197059425 G A ASPM Nonsense_Mutation p.R3244* 0.18 TCGA-YD-A89C-06 1 197316516 197316516 G A CRB1 Missense_Mutation p.E299K 0.17 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 1 197390814 197390814 G A CRB1 Missense_Mutation p.G619E 0.15 tolerated(0.14) benign(0.116) TCGA-YD-A89C-06 1 197404710 197404710 C T CRB1 Silent p.L1239L 0.22 TCGA-YD-A89C-06 1 197564399 197564399 G A DENND1B Missense_Mutation p.A329V 0.15 tolerated(0.11) probably_damaging(1) TCGA-YD-A89C-06 1 198704301 198704301 G A PTPRC Missense_Mutation p.A775T 0.12 tolerated(1) benign(0.023) TCGA-YD-A89C-06 1 19992492 19992492 G A HTR6 Silent p.P82P 0.43 TCGA-YD-A89C-06 1 20005184 20005184 C T HTR6 Missense_Mutation p.T280I 0.43 tolerated(0.19) probably_damaging(0.944) TCGA-YD-A89C-06 1 200956154 200956154 G A KIF21B Missense_Mutation p.T1195I 0.22 tolerated(0.18) benign(0.329) TCGA-YD-A89C-06 1 200971395 200971395 C T KIF21B Silent p.G432G 0.18 TCGA-YD-A89C-06 1 200971396 200971396 C T KIF21B Missense_Mutation p.G432E 0.19 tolerated(0.06) benign(0.074) TCGA-YD-A89C-06 1 201022593 201022593 G A CACNA1S Silent p.S1263S 0.26 TCGA-YD-A89C-06 1 201054708 201054708 C T CACNA1S Missense_Mutation p.E336K 0.15 deleterious(0.02) probably_damaging(0.912) TCGA-YD-A89C-06 1 201056993 201056993 G A CACNA1S Missense_Mutation p.S322F 0.17 deleterious(0) probably_damaging(0.987) TCGA-YD-A89C-06 1 201058394 201058394 G A CACNA1S Missense_Mutation p.L298F 0.14 deleterious(0) possibly_damaging(0.903) TCGA-YD-A89C-06 1 201079385 201079385 C T CACNA1S Silent p.T55T 0.26 TCGA-YD-A89C-06 1 202245457 202245457 C T LGR6 Missense_Mutation p.S151F 0.21 deleterious(0) probably_damaging(0.987) TCGA-YD-A89C-06 1 202396301 202396301 C T PPP1R12B Nonsense_Mutation p.R279* 0.19 TCGA-YD-A89C-06 1 202574838 202574838 C T SYT2 Silent p.T21T 0.29 TCGA-YD-A89C-06 1 202699144 202699144 G A KDM5B Silent p.C1396C 0.26 TCGA-YD-A89C-06 1 20417110 20417110 C T PLA2G5 Silent p.L114L 0.39 TCGA-YD-A89C-06 1 204228451 204228451 G A PLEKHA6 Silent p.S314S 0.17 TCGA-YD-A89C-06 1 204230530 204230530 G A PLEKHA6 Missense_Mutation p.P143L 0.24 tolerated(0.64) benign(0.082) TCGA-YD-A89C-06 1 204401346 204401346 G A PIK3C2B Silent p.F1379F 0.24 TCGA-YD-A89C-06 1 204402963 204402963 G A PIK3C2B Silent p.L1267L 0.23 TCGA-YD-A89C-06 1 204410629 204410629 G A PIK3C2B Silent p.P1073P 0.19 TCGA-YD-A89C-06 1 204948656 204948656 C T NFASC Silent p.L715L 0.22 TCGA-YD-A89C-06 1 204957931 204957931 G A NFASC Missense_Mutation p.E922K 0.28 tolerated(0.23) unknown(0) TCGA-YD-A89C-06 1 205555288 205555288 C T MFSD4 Missense_Mutation p.P368S 0.14 tolerated(0.07) probably_damaging(0.992) TCGA-YD-A89C-06 1 205569641 205569641 G A MFSD4 3'UTR 0.11 TCGA-YD-A89C-06 1 205896733 205896733 C T SLC26A9 Missense_Mutation p.E368K 0.58 deleterious(0) probably_damaging(0.959) TCGA-YD-A89C-06 1 206902748 206902748 C T MAPKAPK2 Silent p.S164S 0.53 TCGA-YD-A89C-06 1 207532971 207532971 G T CD55 Missense_Mutation p.R427I 0.71 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-YD-A89C-06 1 207639913 207639913 T C CR2 Missense_Mutation p.I34T 0.56 tolerated(0.62) benign(0.004) TCGA-YD-A89C-06 1 20945137 20945137 C T CDA 3'UTR 0.37 TCGA-YD-A89C-06 1 211748876 211748876 C T SLC30A1 Missense_Mutation p.E460K 0.56 tolerated(0.23) benign(0.007) TCGA-YD-A89C-06 1 212799048 212799048 G A FAM71A Missense_Mutation p.E277K 0.67 tolerated(0.89) benign(0.058) TCGA-YD-A89C-06 1 212976062 212976062 C T TATDN3 Missense_Mutation p.P93L 0.19 deleterious(0) benign(0.208) TCGA-YD-A89C-06 1 215793713 215793713 G A KCTD3 Missense_Mutation p.G734D 0.20 tolerated_low_confidence(0.22) benign(0.002) TCGA-YD-A89C-06 1 22181244 22181244 G A HSPG2 Missense_Mutation p.P2050S 0.46 benign(0.001) TCGA-YD-A89C-06 1 223395354 223395354 G A SUSD4 3'UTR 0.53 TCGA-YD-A89C-06 1 228333602 228333602 C T GUK1 Intron 0.17 TCGA-YD-A89C-06 1 228496881 228496881 C T OBSCN Missense_Mutation p.S5231F 0.22 probably_damaging(0.999) TCGA-YD-A89C-06 1 228525842 228525842 C T OBSCN Silent p.L6623L 0.14 TCGA-YD-A89C-06 1 22902839 22902839 G A EPHA8 Missense_Mutation p.V97I 0.46 tolerated(1) benign(0.106) TCGA-YD-A89C-06 1 23111022 23111022 G A EPHB2 Silent p.V88V 0.33 TCGA-YD-A89C-06 1 23191626 23191626 C T EPHB2 Silent p.I408I 0.32 TCGA-YD-A89C-06 1 232551265 232551265 G A SIPA1L2 Silent p.L1579L 0.54 TCGA-YD-A89C-06 1 233514892 233514892 C T MLK4 Missense_Mutation p.P714S 0.55 tolerated(0.95) benign(0.009) TCGA-YD-A89C-06 1 236749740 236749740 A G HEATR1 Silent p.L576L 0.21 TCGA-YD-A89C-06 1 237044124 237044124 G A MTR Silent p.K888K 0.15 TCGA-YD-A89C-06 1 237608802 237608802 C T RYR2 Silent p.F424F 0.27 TCGA-YD-A89C-06 1 237777403 237777403 C T RYR2 Missense_Mutation p.R1659W 0.29 probably_damaging(0.919) TCGA-YD-A89C-06 1 238090321 238090321 C T RP11-193H5.1 RNA 0.23 TCGA-YD-A89C-06 1 241032089 241032089 C T RGS7 Missense_Mutation p.E172K 0.24 deleterious(0) probably_damaging(0.984) TCGA-YD-A89C-06 1 244681992 244681992 G A C1orf101 Missense_Mutation p.M176I 0.55 tolerated(0.37) benign(0.002) TCGA-YD-A89C-06 1 246923513 246923513 G A SCCPDH Missense_Mutation p.G325D 0.53 deleterious(0) probably_damaging(0.976) TCGA-YD-A89C-06 1 247588907 247588907 G A NLRP3 Intron 0.19 TCGA-YD-A89C-06 1 247712496 247712496 G A GCSAML Translation_Start_Site p.M1? 0.31 deleterious(0.02) benign(0.216) TCGA-YD-A89C-06 1 247726911 247726911 G A GCSAML Missense_Mutation p.E37K 0.20 tolerated(0.1) possibly_damaging(0.908) TCGA-YD-A89C-06 1 247836090 247836090 G A OR13G1 Missense_Mutation p.S85L 0.56 tolerated(0.13) benign(0.002) TCGA-YD-A89C-06 1 247902096 247902096 C T OR14K1 Silent p.F60F 0.27 TCGA-YD-A89C-06 1 247921626 247921626 G A OR1C1 Missense_Mutation p.S28F 0.25 tolerated(1) possibly_damaging(0.502) TCGA-YD-A89C-06 1 248551036 248551036 G A OR2T6 Missense_Mutation p.G43R 0.28 tolerated(0.08) benign(0.062) TCGA-YD-A89C-06 1 248569903 248569903 C T OR2T1 Missense_Mutation p.S203F 0.54 tolerated(0.08) benign(0.049) TCGA-YD-A89C-06 1 248616509 248616509 G A OR2T2 Missense_Mutation p.M137I 0.26 deleterious(0.01) benign(0.293) TCGA-YD-A89C-06 1 248637589 248637589 G A OR2T3 Missense_Mutation p.R313K 0.26 tolerated(0.34) benign(0.027) TCGA-YD-A89C-06 1 248684977 248684977 G A OR2G6 Silent p.K10K 0.55 TCGA-YD-A89C-06 1 248685677 248685677 C T OR2G6 Missense_Mutation p.H244Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 1 248845378 248845378 C T OR14I1 Silent p.V76V 0.27 TCGA-YD-A89C-06 1 249106232 249106232 G A SH3BP5L Missense_Mutation p.S350F 0.50 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YD-A89C-06 1 24932221 24932221 C T NCMAP Nonsense_Mutation p.Q98* 0.41 TCGA-YD-A89C-06 1 27278510 27278510 C T C1orf172 Missense_Mutation p.G121E 0.32 tolerated(1) benign(0.002) TCGA-YD-A89C-06 1 27632754 27632754 C T WDTC1 Silent p.D637D 0.43 TCGA-YD-A89C-06 1 28282598 28282598 G A SMPDL3B Intron 0.42 TCGA-YD-A89C-06 1 29606079 29606079 C T PTPRU Missense_Mutation p.P559S 0.36 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 1 33065826 33065826 C T ZBTB8A Missense_Mutation p.P378S 0.43 benign(0.219) TCGA-YD-A89C-06 1 34008426 34008426 G A CSMD2 Silent p.S2913S 0.27 TCGA-YD-A89C-06 1 34164413 34164413 C T CSMD2 Missense_Mutation p.E1249K 0.37 tolerated(0.62) benign(0.065) TCGA-YD-A89C-06 1 34673767 34673767 C T C1orf94 Missense_Mutation p.P486S 0.41 deleterious_low_confidence(0.01) benign(0.27) TCGA-YD-A89C-06 1 35370196 35370196 G A DLGAP3 Silent p.S263S 0.32 TCGA-YD-A89C-06 1 35370197 35370197 G A DLGAP3 Missense_Mutation p.S263F 0.32 deleterious(0) probably_damaging(0.979) TCGA-YD-A89C-06 1 35854594 35854594 C T ZMYM4 Missense_Mutation p.P783S 0.36 deleterious(0.05) probably_damaging(0.926) TCGA-YD-A89C-06 1 36026176 36026176 G A NCDN Missense_Mutation p.D142N 0.27 tolerated(0.28) benign(0.049) TCGA-YD-A89C-06 1 36636587 36636587 C T MAP7D1 Missense_Mutation p.T21I 0.36 benign(0.008) TCGA-YD-A89C-06 1 38095256 38095256 C T RSPO1 Silent p.G26G 0.31 TCGA-YD-A89C-06 1 38095257 38095257 C T RSPO1 Missense_Mutation p.G26E 0.30 deleterious(0.02) benign(0.342) TCGA-YD-A89C-06 1 40555091 40555091 A G PPT1 Missense_Mutation p.V176A 0.41 deleterious(0.02) possibly_damaging(0.557) TCGA-YD-A89C-06 1 40887855 40887855 C T SMAP2 3'UTR 0.56 TCGA-YD-A89C-06 1 42049977 42049977 G A HIVEP3 Silent p.F164F 0.30 TCGA-YD-A89C-06 1 42620362 42620362 C T GUCA2B Silent p.F34F 0.25 TCGA-YD-A89C-06 1 43738927 43738927 C T TMEM125 Silent p.S178S 0.25 TCGA-YD-A89C-06 1 43779589 43779589 C T TIE1 Missense_Mutation p.R787C 0.22 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 1 43893375 43893375 C T SZT2 Missense_Mutation p.P1201L 0.28 tolerated(0.24) probably_damaging(0.937) TCGA-YD-A89C-06 1 45294064 45294064 G A PTCH2 Missense_Mutation p.T538I 0.43 deleterious(0.03) benign(0) TCGA-YD-A89C-06 1 45294702 45294702 G A PTCH2 Silent p.F472F 0.33 TCGA-YD-A89C-06 1 45478869 45478869 C T UROD Silent p.C65C 0.05 TCGA-YD-A89C-06 1 46120472 46120472 G A GPBP1L1 Missense_Mutation p.H74Y 0.44 tolerated(0.11) benign(0.079) TCGA-YD-A89C-06 1 46976287 46976287 G A DMBX1 Silent p.R98R 0.26 TCGA-YD-A89C-06 1 47548103 47548103 C T CYP4Z1 Silent p.T154T 0.33 TCGA-YD-A89C-06 1 47550304 47550304 G A CYP4Z1 Missense_Mutation p.E169K 0.41 tolerated(1) benign(0.001) TCGA-YD-A89C-06 1 48703385 48703385 C T SLC5A9 Missense_Mutation p.L468F 0.33 deleterious(0.02) possibly_damaging(0.734) TCGA-YD-A89C-06 1 50885249 50885249 C T DMRTA2 Silent p.S239S 0.60 TCGA-YD-A89C-06 1 55119335 55119335 G A MROH7 Missense_Mutation p.E246K 0.47 tolerated_low_confidence(0.2) benign(0.035) TCGA-YD-A89C-06 1 55451967 55451967 C T TMEM61 Silent p.F71F 0.46 TCGA-YD-A89C-06 1 55521741 55521741 G A PCSK9 Missense_Mutation p.G292E 0.42 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 1 55590237 55590237 G A USP24 Missense_Mutation p.A1342V 0.28 deleterious(0) benign(0.059) TCGA-YD-A89C-06 1 57159464 57159464 G A PRKAA2 Missense_Mutation p.E168K 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-YD-A89C-06 1 57192219 57192219 G A C1orf168 Silent p.L611L 0.36 TCGA-YD-A89C-06 1 57351605 57351605 C T C8A Silent p.F287F 0.44 TCGA-YD-A89C-06 1 57351660 57351660 G A C8A Missense_Mutation p.D306N 0.36 tolerated(0.65) benign(0.013) TCGA-YD-A89C-06 1 57399065 57399065 C T C8B Missense_Mutation p.E499K 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 1 57422541 57422541 C T C8B Missense_Mutation p.E98K 0.43 tolerated(0.08) benign(0.382) TCGA-YD-A89C-06 1 62321810 62321810 A C INADL Missense_Mutation p.N741H 0.40 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 1 62676230 62676230 G A L1TD1 Missense_Mutation p.R595K 0.41 tolerated(1) benign(0.022) TCGA-YD-A89C-06 1 64606097 64606097 C T ROR1 Missense_Mutation p.P306S 0.23 tolerated(0.91) benign(0.017) TCGA-YD-A89C-06 1 66085674 66085674 G A LEPR Missense_Mutation p.G820E 0.26 deleterious(0) probably_damaging(0.972) TCGA-YD-A89C-06 1 66102592 66102592 G A LEPR Missense_Mutation p.G1131E 0.30 tolerated(0.34) benign(0.059) TCGA-YD-A89C-06 1 70541836 70541836 G A LRRC7 Missense_Mutation p.G1398E 0.30 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 1 70573503 70573503 C T LRRC7 Silent p.I1500I 0.32 TCGA-YD-A89C-06 1 74507060 74507060 G A LRRIQ3 Nonsense_Mutation p.Q519* 0.40 TCGA-YD-A89C-06 1 74507089 74507089 G A LRRIQ3 Missense_Mutation p.S509F 0.32 deleterious(0) benign(0.062) TCGA-YD-A89C-06 1 74507480 74507480 G A LRRIQ3 Missense_Mutation p.P379S 0.46 tolerated(0.27) benign(0.035) TCGA-YD-A89C-06 1 75038062 75038062 G A C1orf173 Missense_Mutation p.A1111V 0.36 tolerated(0.22) benign(0.001) TCGA-YD-A89C-06 1 75072487 75072487 C T C1orf173 Silent p.G429G 0.32 TCGA-YD-A89C-06 1 75072531 75072531 C T C1orf173 Missense_Mutation p.E415K 0.33 tolerated(0.12) benign(0.26) TCGA-YD-A89C-06 1 82456266 82456266 C G LPHN2 Missense_Mutation p.R1217G 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 1 85491540 85491540 G A MCOLN3 Intron 0.35 TCGA-YD-A89C-06 1 85561676 85561676 C T WDR63 Silent p.I412I 0.35 TCGA-YD-A89C-06 1 86048539 86048539 C T CYR61 Silent p.G320G 0.41 TCGA-YD-A89C-06 1 86196316 86196316 T C COL24A1 Silent p.Q1686Q 0.48 TCGA-YD-A89C-06 1 89650932 89650932 G A GBP4 3'UTR 0.39 TCGA-YD-A89C-06 1 94668094 94668094 C T ARHGAP29 Intron 0.34 TCGA-YD-A89C-06 1 985692 985692 C T AGRN Silent p.T1653T 0.31 TCGA-YD-A89C-06 20 11903655 11903655 T C BTBD3 Silent p.L304L 0.43 TCGA-YD-A89C-06 20 11904101 11904101 C T BTBD3 Silent p.P452P 0.31 TCGA-YD-A89C-06 20 13747433 13747433 C T ESF1 Missense_Mutation p.E553K 0.44 tolerated(0.42) benign(0.118) TCGA-YD-A89C-06 20 13753186 13753186 G A ESF1 Missense_Mutation p.P409S 0.40 tolerated(0.15) benign(0.355) TCGA-YD-A89C-06 20 1538306 1538306 G A RP4-576H24.4 Intron 0.43 TCGA-YD-A89C-06 20 16729035 16729035 G A OTOR 5'UTR 0.42 TCGA-YD-A89C-06 20 1961200 1961200 A T PDYN Missense_Mutation p.F178L 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 20 19981262 19981262 C T RIN2 Silent p.Y839Y 0.38 TCGA-YD-A89C-06 20 25059292 25059292 G A VSX1 Intron 0.42 TCGA-YD-A89C-06 20 29964979 29964979 G A DEFB118 3'Flank 0.29 TCGA-YD-A89C-06 20 30193162 30193162 C T ID1 5'UTR 0.41 TCGA-YD-A89C-06 20 30671809 30671809 C T HCK Silent p.T215T 0.39 TCGA-YD-A89C-06 20 31607399 31607399 T C BPIFB2 Missense_Mutation p.F308S 0.15 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 20 31682933 31682933 G A BPIFB4 Missense_Mutation p.A458T 0.33 tolerated(0.38) benign(0.012) TCGA-YD-A89C-06 20 31685540 31685540 G A BPIFB4 Missense_Mutation p.V506I 0.39 tolerated(0.18) benign(0.019) TCGA-YD-A89C-06 20 31812911 31812911 G A BPIFA3 Missense_Mutation p.D132N 0.34 tolerated(1) benign(0.002) TCGA-YD-A89C-06 20 31828087 31828087 C T BPIFA1 Silent p.I159I 0.38 TCGA-YD-A89C-06 20 33128551 33128551 C T DYNLRB1 3'UTR 0.50 TCGA-YD-A89C-06 20 33530338 33530338 G A GSS Silent p.I148I 0.43 TCGA-YD-A89C-06 20 33567219 33567219 G A MYH7B Missense_Mutation p.E82K 0.40 possibly_damaging(0.574) TCGA-YD-A89C-06 20 33874951 33874951 C T FAM83C Missense_Mutation p.R544K 0.47 tolerated_low_confidence(0.22) benign(0.01) TCGA-YD-A89C-06 20 35695692 35695692 G A RBL1 Missense_Mutation p.P167L 0.36 deleterious(0.02) benign(0.17) TCGA-YD-A89C-06 20 3672838 3672838 C T SIGLEC1 Missense_Mutation p.D1348N 0.44 tolerated(0.24) benign(0.016) TCGA-YD-A89C-06 20 368808 368808 C T TRIB3 Missense_Mutation p.P52S 0.33 tolerated(0.08) benign(0.025) TCGA-YD-A89C-06 20 36989364 36989364 G A LBP Missense_Mutation p.E199K 0.32 tolerated(0.15) benign(0.064) TCGA-YD-A89C-06 20 39984650 39984650 C T LPIN3 Silent p.S593S 0.33 TCGA-YD-A89C-06 20 39991305 39991305 C T EMILIN3 Missense_Mutation p.E302K 0.25 deleterious(0.05) probably_damaging(0.95) TCGA-YD-A89C-06 20 40727111 40727111 C T PTPRT Missense_Mutation p.D1266N 0.33 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 20 41420026 41420026 C T PTPRT Missense_Mutation p.D99N 0.44 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 20 42163576 42163576 C T L3MBTL1 Missense_Mutation p.P585S 0.20 deleterious(0.02) probably_damaging(0.952) TCGA-YD-A89C-06 20 42252668 42252668 C T IFT52 Silent p.S302S 0.36 TCGA-YD-A89C-06 20 42694557 42694557 C T TOX2 Missense_Mutation p.S389F 0.32 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 20 43029950 43029950 G A HNF4A 5'UTR 0.33 TCGA-YD-A89C-06 20 43109019 43109019 C T TTPAL Missense_Mutation p.S127F 0.38 tolerated(0.05) possibly_damaging(0.854) TCGA-YD-A89C-06 20 43559174 43559174 C T PABPC1L Missense_Mutation p.A349V 0.36 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 20 44512649 44512649 C T ZSWIM1 Missense_Mutation p.A473V 0.07 tolerated(0.13) probably_damaging(0.999) TCGA-YD-A89C-06 20 47607590 47607590 C T ARFGEF2 Missense_Mutation p.A943V 0.38 deleterious(0) possibly_damaging(0.887) TCGA-YD-A89C-06 20 47991141 47991141 G A KCNB1 Missense_Mutation p.S319F 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 20 50230289 50230289 C T ATP9A Missense_Mutation p.R833Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 20 50400799 50400799 C T SALL4 3'UTR 0.30 TCGA-YD-A89C-06 20 50782477 50782477 G A ZFP64 Missense_Mutation p.S125F 0.36 deleterious(0.01) benign(0.424) TCGA-YD-A89C-06 20 51872128 51872128 G A TSHZ2 Missense_Mutation p.E711K 0.28 tolerated(1) probably_damaging(0.993) TCGA-YD-A89C-06 20 52198067 52198067 G C ZNF217 Silent p.A433A 0.42 TCGA-YD-A89C-06 20 5283319 5283319 G A PROKR2 Silent p.I174I 0.29 TCGA-YD-A89C-06 20 55099881 55099881 C G FAM209A Missense_Mutation p.S6W 0.15 tolerated(0.99) benign(0.002) TCGA-YD-A89C-06 20 55108414 55108414 C G FAM209B Missense_Mutation p.S6W 0.25 tolerated(1) possibly_damaging(0.581) TCGA-YD-A89C-06 20 56078519 56078519 C T CTCFL Missense_Mutation p.G605R 0.35 tolerated(0.08) possibly_damaging(0.56) TCGA-YD-A89C-06 20 56186824 56186824 G A ZBP1 Missense_Mutation p.P278L 0.62 tolerated(0.26) benign(0.001) TCGA-YD-A89C-06 20 57289638 57289638 C T NPEPL1 Missense_Mutation p.S442F 0.24 deleterious(0) probably_damaging(0.982) TCGA-YD-A89C-06 20 57829397 57829397 G A ZNF831 Missense_Mutation p.G1545R 0.39 tolerated(0.1) probably_damaging(0.916) TCGA-YD-A89C-06 20 57829398 57829398 G A ZNF831 Missense_Mutation p.G1545E 0.39 tolerated(0.65) benign(0.173) TCGA-YD-A89C-06 20 58883582 58883582 C T MIR646 RNA 0.29 TCGA-YD-A89C-06 20 60985968 60985968 G A RBBP8NL Missense_Mutation p.P654L 0.41 tolerated(0.08) benign(0.07) TCGA-YD-A89C-06 20 61941228 61941228 G A COL20A1 Silent p.L408L 0.37 TCGA-YD-A89C-06 20 61957496 61957496 C T COL20A1 Missense_Mutation p.P1151S 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-YD-A89C-06 20 62366887 62366887 C T ZGPAT Silent p.I476I 0.22 TCGA-YD-A89C-06 20 9382163 9382163 G A PLCB4 Missense_Mutation p.E513K 0.36 tolerated(0.13) benign(0.08) TCGA-YD-A89C-06 20 9523334 9523334 C T PAK7 Missense_Mutation p.E635K 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 21 10916389 10916389 G A TPTE Silent p.F419F 0.16 TCGA-YD-A89C-06 21 11012917 11012917 C T TPTE Intron 0.12 TCGA-YD-A89C-06 21 11038985 11038985 G A BAGE2 RNA 0.04 TCGA-YD-A89C-06 21 11039057 11039057 C T BAGE2 RNA 0.05 TCGA-YD-A89C-06 21 11039281 11039281 G A BAGE2 RNA 0.05 TCGA-YD-A89C-06 21 11039397 11039397 C T BAGE2 RNA 0.09 TCGA-YD-A89C-06 21 22696791 22696791 C T NCAM2 Silent p.G236G 0.43 TCGA-YD-A89C-06 21 27840924 27840924 C T CYYR1 Missense_Mutation p.E121K 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-YD-A89C-06 21 33057500 33057500 G A SCAF4 Missense_Mutation p.P784S 0.54 unknown(0) TCGA-YD-A89C-06 21 37504953 37504953 G A CBR3 5'Flank 0.44 TCGA-YD-A89C-06 21 38126585 38126585 C T HLCS Missense_Mutation p.D715N 0.68 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 21 41142948 41142948 C T IGSF5 Missense_Mutation p.S175F 0.69 tolerated(0.08) benign(0.025) TCGA-YD-A89C-06 21 43549897 43549897 C T UMODL1 Silent p.I1383I 0.62 TCGA-YD-A89C-06 21 43896110 43896110 C T RSPH1 Missense_Mutation p.E259K 0.48 tolerated(0.09) benign(0.043) TCGA-YD-A89C-06 21 45741679 45741679 C T PFKL Missense_Mutation p.S420L 0.47 deleterious(0) probably_damaging(0.99) TCGA-YD-A89C-06 22 17073247 17073247 C T CCT8L2 Missense_Mutation p.G65E 0.21 tolerated(0.36) probably_damaging(0.993) TCGA-YD-A89C-06 22 17309722 17309722 C T HSFY1P1 RNA 0.35 TCGA-YD-A89C-06 22 22516845 22516845 C T IGLV4-60 Silent p.L45L 0.51 TCGA-YD-A89C-06 22 22724365 22724365 C T IGLV7-46 Silent p.L87L 0.40 TCGA-YD-A89C-06 22 23029674 23029674 C T IGLV3-25 Silent p.T92T 0.35 TCGA-YD-A89C-06 22 24581742 24581742 C T SUSD2 Missense_Mutation p.P395L 0.55 tolerated(0.14) probably_damaging(0.998) TCGA-YD-A89C-06 22 24622210 24622210 C T GGT5 Missense_Mutation p.E355K 0.31 tolerated(0.14) probably_damaging(0.93) TCGA-YD-A89C-06 22 24628818 24628818 C T GGT5 Missense_Mutation p.R190Q 0.38 tolerated(0.37) benign(0.074) TCGA-YD-A89C-06 22 24898403 24898403 C T UPB1 Intron 0.51 TCGA-YD-A89C-06 22 26286817 26286817 C T MYO18B Missense_Mutation p.A1470V 0.45 tolerated(0.15) benign(0.133) TCGA-YD-A89C-06 22 26286818 26286818 C A MYO18B Silent p.A1470A 0.45 TCGA-YD-A89C-06 22 26773660 26773660 C T SEZ6L Silent p.L988L 0.25 TCGA-YD-A89C-06 22 28195029 28195029 A T MN1 Silent p.P501P 0.30 TCGA-YD-A89C-06 22 29454774 29454774 C T C22orf31 Missense_Mutation p.E277K 0.58 tolerated_low_confidence(0.1) benign(0.067) TCGA-YD-A89C-06 22 29630332 29630332 G A EMID1 Silent p.G356G 0.46 TCGA-YD-A89C-06 22 30887866 30887866 G A SEC14L4 Missense_Mutation p.S289F 0.11 tolerated(0.06) benign(0.195) TCGA-YD-A89C-06 22 31521988 31521988 C T INPP5J Intron 0.53 TCGA-YD-A89C-06 22 31524063 31524063 C A INPP5J Intron 0.39 TCGA-YD-A89C-06 22 31658771 31658771 C T LIMK2 Missense_Mutation p.S262F 0.39 deleterious(0.01) possibly_damaging(0.887) TCGA-YD-A89C-06 22 31658772 31658772 C T LIMK2 Silent p.S262S 0.41 TCGA-YD-A89C-06 22 32811935 32811935 G A BPIFC Silent p.F456F 0.29 TCGA-YD-A89C-06 22 36055020 36055020 G A APOL6 Missense_Mutation p.E137K 0.31 tolerated(1) benign(0.002) TCGA-YD-A89C-06 22 36661567 36661567 G A APOL1 Missense_Mutation p.D245N 0.57 deleterious(0) benign(0.21) TCGA-YD-A89C-06 22 37098459 37098459 C T CACNG2 Missense_Mutation p.E55K 0.22 tolerated(0.72) benign(0.367) TCGA-YD-A89C-06 22 37319377 37319377 C T CSF2RB Silent p.L56L 0.40 TCGA-YD-A89C-06 22 37334590 37334590 C T CSF2RB 3'UTR 0.20 TCGA-YD-A89C-06 22 37482452 37482452 C T TMPRSS6 Missense_Mutation p.G291S 0.73 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 22 37769181 37769181 G A ELFN2 Silent p.F798F 0.54 TCGA-YD-A89C-06 22 38474515 38474515 G A SLC16A8 Silent p.P465P 0.56 TCGA-YD-A89C-06 22 38474516 38474516 G A SLC16A8 Missense_Mutation p.P465L 0.57 tolerated(0.06) benign(0.001) TCGA-YD-A89C-06 22 38511540 38511540 G A PLA2G6 Silent p.I676I 0.54 TCGA-YD-A89C-06 22 38621555 38621555 G A TMEM184B Silent p.S221S 0.61 TCGA-YD-A89C-06 22 38822683 38822683 C T KCNJ4 3'UTR 0.37 TCGA-YD-A89C-06 22 38823862 38823862 C T KCNJ4 Silent p.G92G 0.19 TCGA-YD-A89C-06 22 38935407 38935407 G A DMC1 Missense_Mutation p.R169C 0.62 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 22 39475083 39475083 G A APOBEC3G Missense_Mutation p.R55Q 0.22 tolerated(0.15) benign(0.011) TCGA-YD-A89C-06 22 40055524 40055524 C T CACNA1I Missense_Mutation p.S806F 0.53 deleterious(0) benign(0.365) TCGA-YD-A89C-06 22 40139727 40139727 G A ENTHD1 Missense_Mutation p.S594F 0.22 deleterious(0.04) unknown(0) TCGA-YD-A89C-06 22 40416003 40416003 G A FAM83F Missense_Mutation p.G257E 0.26 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 22 41166763 41166763 G A SLC25A17 3'UTR 0.24 TCGA-YD-A89C-06 22 44581721 44581721 G A PARVG Missense_Mutation p.R38Q 0.36 tolerated(0.07) benign(0.075) TCGA-YD-A89C-06 22 46684411 46684411 C T TTC38 Silent p.F336F 0.51 TCGA-YD-A89C-06 22 50547265 50547265 G A MOV10L1 Silent p.V245V 0.23 TCGA-YD-A89C-06 22 50552186 50552186 G A MOV10L1 Missense_Mutation p.G285R 0.32 deleterious(0.02) possibly_damaging(0.88) TCGA-YD-A89C-06 22 50875473 50875473 C T PPP6R2 Intron 0.56 TCGA-YD-A89C-06 22 50903124 50903124 G A SBF1 Missense_Mutation p.P492L 0.17 deleterious(0.02) possibly_damaging(0.869) TCGA-YD-A89C-06 2 101609841 101609841 C T NPAS2 Missense_Mutation p.P715L 0.41 tolerated(0.88) benign(0.001) TCGA-YD-A89C-06 2 102505311 102505311 C T MAP4K4 Nonsense_Mutation p.R1184* 0.45 TCGA-YD-A89C-06 2 102805735 102805735 A C IL1RL2 Missense_Mutation p.E86D 0.27 tolerated(0.14) benign(0.109) TCGA-YD-A89C-06 2 103013107 103013107 G A IL18R1 Missense_Mutation p.A463T 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 2 107423211 107423211 G A ST6GAL2 Missense_Mutation p.R505C 0.60 probably_damaging(0.946) TCGA-YD-A89C-06 2 108489015 108489015 G A RGPD4 Missense_Mutation p.E1519K 0.09 tolerated(0.4) possibly_damaging(0.827) TCGA-YD-A89C-06 2 109379885 109379885 T G RANBP2 Missense_Mutation p.Y964D 0.57 deleterious(0) benign(0.029) TCGA-YD-A89C-06 2 109380220 109380220 C T RANBP2 Silent p.P1075P 0.28 TCGA-YD-A89C-06 2 109380324 109380324 C T RANBP2 Missense_Mutation p.S1110L 0.59 deleterious(0) benign(0.158) TCGA-YD-A89C-06 2 109527241 109527241 C T EDAR Missense_Mutation p.E241K 0.48 tolerated(0.1) benign(0.053) TCGA-YD-A89C-06 2 110015273 110015273 C T SH3RF3 Silent p.S391S 0.32 TCGA-YD-A89C-06 2 111556607 111556607 C T ACOXL Silent p.I159I 0.53 TCGA-YD-A89C-06 2 112621316 112621316 G A ANAPC1 Missense_Mutation p.R330C 0.25 tolerated(0.08) possibly_damaging(0.871) TCGA-YD-A89C-06 2 112785995 112785995 C T MERTK Silent p.L852L 0.53 TCGA-YD-A89C-06 2 121106790 121106790 C T INHBB Silent p.V188V 0.28 TCGA-YD-A89C-06 2 121746835 121746835 C T GLI2 Silent p.S1115S 0.67 TCGA-YD-A89C-06 2 121992836 121992836 G A TFCP2L1 Missense_Mutation p.P352L 0.20 tolerated(0.79) probably_damaging(0.997) TCGA-YD-A89C-06 2 122038807 122038807 G A TFCP2L1 Nonsense_Mutation p.Q35* 0.26 TCGA-YD-A89C-06 2 122161977 122161977 G A CLASP1 Silent p.F901F 0.59 TCGA-YD-A89C-06 2 125175030 125175030 G A CNTNAP5 Missense_Mutation p.G131E 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 2 128340002 128340002 G A MYO7B Missense_Mutation p.E442K 0.41 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 2 130877624 130877624 C T POTEF Silent p.K155K 0.53 TCGA-YD-A89C-06 2 132010613 132010613 G A POTEE Silent p.R573R 0.66 TCGA-YD-A89C-06 2 133174510 133174510 C T GPR39 5'UTR 0.68 TCGA-YD-A89C-06 2 133541295 133541295 G A NCKAP5 Missense_Mutation p.T1030I 0.23 tolerated(0.08) benign(0.222) TCGA-YD-A89C-06 2 133618137 133618137 C T NCKAP5 Silent p.L245L 0.61 TCGA-YD-A89C-06 2 135744621 135744621 C T MAP3K19 Silent p.Q607Q 0.54 TCGA-YD-A89C-06 2 136566214 136566214 C T LCT Missense_Mutation p.E1235K 0.26 tolerated(0.48) benign(0.033) TCGA-YD-A89C-06 2 136590750 136590750 G A LCT Silent p.L217L 0.26 TCGA-YD-A89C-06 2 137872800 137872800 C T THSD7B Nonsense_Mutation p.Q436* 0.67 TCGA-YD-A89C-06 2 141055389 141055389 T G LRP1B Silent p.R4319R 0.25 TCGA-YD-A89C-06 2 141081469 141081469 T C LRP1B Silent p.Q4169Q 0.61 TCGA-YD-A89C-06 2 141607715 141607715 C T LRP1B Missense_Mutation p.R1632Q 0.16 possibly_damaging(0.553) TCGA-YD-A89C-06 2 141641470 141641470 G A LRP1B Missense_Mutation p.A1362V 0.60 benign(0.025) TCGA-YD-A89C-06 2 144899575 144899575 G A GTDC1 Missense_Mutation p.S132L 0.57 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 2 1488431 1488431 G A TPO Missense_Mutation p.G468S 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-YD-A89C-06 2 149528936 149528936 C T EPC2 Missense_Mutation p.T567I 0.30 tolerated(0.28) possibly_damaging(0.522) TCGA-YD-A89C-06 2 152214229 152214229 G A TNFAIP6 Missense_Mutation p.G17R 0.24 deleterious(0.02) benign(0.372) TCGA-YD-A89C-06 2 152273406 152273406 T G RIF1 Missense_Mutation p.V165G 0.57 deleterious(0) probably_damaging(0.987) TCGA-YD-A89C-06 2 152273407 152273407 T G RIF1 Silent p.V165V 0.57 TCGA-YD-A89C-06 2 153415313 153415313 T G FMNL2 Missense_Mutation p.L140R 0.58 probably_damaging(0.988) TCGA-YD-A89C-06 2 155711781 155711781 C T KCNJ3 Missense_Mutation p.L488F 0.64 tolerated_low_confidence(0.24) possibly_damaging(0.891) TCGA-YD-A89C-06 2 158115942 158115942 G A GALNT5 Missense_Mutation p.G450R 0.34 tolerated(0.06) possibly_damaging(0.477) TCGA-YD-A89C-06 2 160813059 160813059 C T PLA2R1 Missense_Mutation p.G995E 0.52 tolerated(0.7) benign(0.068) TCGA-YD-A89C-06 2 162730467 162730467 G A SLC4A10 Silent p.G300G 0.52 TCGA-YD-A89C-06 2 163138965 163138965 G A IFIH1 Missense_Mutation p.S406F 0.30 deleterious(0.01) possibly_damaging(0.678) TCGA-YD-A89C-06 2 163228345 163228345 C T KCNH7 Silent p.G1195G 0.19 TCGA-YD-A89C-06 2 165946756 165946756 G A SCN3A Silent p.S1969S 0.51 TCGA-YD-A89C-06 2 165946757 165946757 G A SCN3A Missense_Mutation p.S1969F 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A89C-06 2 166605285 166605285 G A GALNT3 3'UTR 0.30 TCGA-YD-A89C-06 2 166901678 166901678 C T SCN1A Missense_Mutation p.E513K 0.49 tolerated(0.06) possibly_damaging(0.601) TCGA-YD-A89C-06 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.29 tolerated(0.08) benign(0.007) TCGA-YD-A89C-06 2 168105867 168105867 G A XIRP2 Missense_Mutation p.M2655I 0.27 benign(0.003) TCGA-YD-A89C-06 2 169780207 169780207 C T ABCB11 Silent p.K1297K 0.26 TCGA-YD-A89C-06 2 170012858 170012858 C T LRP2 Missense_Mutation p.G4026E 0.52 probably_damaging(1) TCGA-YD-A89C-06 2 170063052 170063052 G A LRP2 Missense_Mutation p.A2393V 0.27 benign(0.05) TCGA-YD-A89C-06 2 170557535 170557535 T G PHOSPHO2 Missense_Mutation p.S18R 0.21 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 2 171400494 171400494 G A MYO3B Silent p.K1243K 0.26 TCGA-YD-A89C-06 2 17698854 17698854 C T RAD51AP2 Missense_Mutation p.E277K 0.22 tolerated(0.07) possibly_damaging(0.67) TCGA-YD-A89C-06 2 179404021 179404021 C T TTN Intron 0.69 TCGA-YD-A89C-06 2 179416591 179416591 C T TTN Missense_Mutation p.D30346N 0.30 TCGA-YD-A89C-06 2 179417087 179417087 G A TTN Silent p.F30180F 0.26 TCGA-YD-A89C-06 2 179429933 179429933 G A TTN Missense_Mutation p.P26976S 0.21 TCGA-YD-A89C-06 2 179431262 179431262 C T TTN Missense_Mutation p.E26533K 0.26 TCGA-YD-A89C-06 2 179439635 179439635 C T TTN Missense_Mutation p.D23742N 0.20 TCGA-YD-A89C-06 2 179441355 179441355 C T TTN Missense_Mutation p.E23206K 0.50 TCGA-YD-A89C-06 2 179451999 179451999 C T TTN Nonsense_Mutation p.W21313* 0.19 TCGA-YD-A89C-06 2 179454069 179454069 C T TTN Missense_Mutation p.G20795S 0.55 TCGA-YD-A89C-06 2 179454461 179454461 T - TTN Frame_Shift_Del p.N20664Tfs*24 0.20 TCGA-YD-A89C-06 2 179454697 179454697 G A TTN Silent p.N20585N 0.29 TCGA-YD-A89C-06 2 179463268 179463268 C T TTN Missense_Mutation p.E19026K 0.52 TCGA-YD-A89C-06 2 179481332 179481332 C T TTN Silent p.L16062L 0.27 TCGA-YD-A89C-06 2 179498276 179498276 G A TTN Silent p.V14270V 0.29 TCGA-YD-A89C-06 2 179498800 179498800 C T TTN Silent p.L14142L 0.26 TCGA-YD-A89C-06 2 179499293 179499293 C T TTN Missense_Mutation p.R14072Q 0.28 TCGA-YD-A89C-06 2 179569660 179569660 C T TTN Missense_Mutation p.E9880K 0.57 TCGA-YD-A89C-06 2 179584360 179584360 C T TTN Missense_Mutation p.M7953I 0.30 TCGA-YD-A89C-06 2 179585319 179585319 C T TTN Missense_Mutation p.E7724K 0.11 TCGA-YD-A89C-06 2 179590257 179590257 C T TTN Missense_Mutation p.E6892K 0.49 TCGA-YD-A89C-06 2 179594516 179594516 G A TTN Missense_Mutation p.S6155F 0.24 TCGA-YD-A89C-06 2 179602900 179602900 C T TTN Silent p.L4760L 0.53 TCGA-YD-A89C-06 2 179612234 179612234 G A TTN Intron 0.25 TCGA-YD-A89C-06 2 179612684 179612684 C T TTN Intron 0.60 TCGA-YD-A89C-06 2 179613582 179613582 C T TTN Intron 0.23 TCGA-YD-A89C-06 2 179613769 179613769 C T TTN Intron 0.20 TCGA-YD-A89C-06 2 179613786 179613786 T C TTN Intron 0.18 TCGA-YD-A89C-06 2 179621255 179621255 C T TTN Missense_Mutation p.E3650K 0.37 TCGA-YD-A89C-06 2 179639902 179639902 T A TTN Missense_Mutation p.E2179V 0.28 TCGA-YD-A89C-06 2 179702112 179702112 A T CCDC141 Missense_Mutation p.D1278E 0.45 tolerated(0.41) benign(0.006) TCGA-YD-A89C-06 2 179702114 179702114 C A CCDC141 Missense_Mutation p.D1278Y 0.43 deleterious(0.01) possibly_damaging(0.498) TCGA-YD-A89C-06 2 179702223 179702223 G A CCDC141 Silent p.S1241S 0.55 TCGA-YD-A89C-06 2 179732790 179732790 G A CCDC141 Missense_Mutation p.S846F 0.18 deleterious(0.01) probably_damaging(0.914) TCGA-YD-A89C-06 2 179732833 179732833 C T CCDC141 Missense_Mutation p.E832K 0.22 deleterious(0.04) benign(0.202) TCGA-YD-A89C-06 2 185800851 185800851 G A ZNF804A Missense_Mutation p.G243E 0.33 tolerated(1) benign(0.001) TCGA-YD-A89C-06 2 186671721 186671721 G A FSIP2 Missense_Mutation p.M5985I 0.64 benign(0.054) TCGA-YD-A89C-06 2 18745142 18745142 C T NT5C1B Missense_Mutation p.D585N 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 2 189599297 189599297 G A DIRC1 3'UTR 0.21 TCGA-YD-A89C-06 2 189857632 189857632 G A COL3A1 Missense_Mutation p.G339E 0.59 unknown(0) TCGA-YD-A89C-06 2 191302276 191302276 C T MFSD6 Silent p.I507I 0.24 TCGA-YD-A89C-06 2 192228474 192228474 C T MYO1B Silent p.G262G 0.23 TCGA-YD-A89C-06 2 192700811 192700811 G A SDPR Silent p.I372I 0.50 TCGA-YD-A89C-06 2 196544856 196544856 C T SLC39A10 Silent p.D30D 0.47 TCGA-YD-A89C-06 2 196651895 196651895 C T DNAH7 Missense_Mutation p.E3573K 0.25 tolerated(0.48) benign(0.005) TCGA-YD-A89C-06 2 196722349 196722349 G A DNAH7 Silent p.I2722I 0.48 TCGA-YD-A89C-06 2 196729289 196729289 G A DNAH7 Nonsense_Mutation p.Q2364* 0.49 TCGA-YD-A89C-06 2 196729446 196729446 C T DNAH7 Missense_Mutation p.M2311I 0.50 deleterious(0) benign(0.114) TCGA-YD-A89C-06 2 196759862 196759862 G A DNAH7 Silent p.A1578A 0.26 TCGA-YD-A89C-06 2 196786898 196786898 C T DNAH7 Missense_Mutation p.M1283I 0.55 tolerated(0.25) possibly_damaging(0.721) TCGA-YD-A89C-06 2 196791228 196791228 C T DNAH7 Nonsense_Mutation p.W1178* 0.47 TCGA-YD-A89C-06 2 196822087 196822087 G A DNAH7 Silent p.P992P 0.26 TCGA-YD-A89C-06 2 200298226 200298226 G A SATB2 Missense_Mutation p.P61S 0.23 deleterious(0) probably_damaging(0.985) TCGA-YD-A89C-06 2 201436070 201436070 C T SGOL2 Missense_Mutation p.S334F 0.23 tolerated(0.06) benign(0.103) TCGA-YD-A89C-06 2 207169652 207169652 C T ZDBF2 Nonsense_Mutation p.R134* 0.30 TCGA-YD-A89C-06 2 207175078 207175078 C T ZDBF2 Silent p.I1942I 0.28 TCGA-YD-A89C-06 2 21225849 21225849 G A APOB Nonsense_Mutation p.Q4149* 0.31 TCGA-YD-A89C-06 2 21234064 21234064 G A APOB Silent p.F1892F 0.32 TCGA-YD-A89C-06 2 212652880 212652880 G A ERBB4 Silent p.I142I 0.56 TCGA-YD-A89C-06 2 216285401 216285401 G A FN1 Missense_Mutation p.P557L 0.18 deleterious(0.03) probably_damaging(1) TCGA-YD-A89C-06 2 217055036 217055036 C T XRCC5 Silent p.A641A 0.18 TCGA-YD-A89C-06 2 217142566 217142566 C T MARCH4 Missense_Mutation p.V232I 0.12 deleterious(0.01) benign(0.241) TCGA-YD-A89C-06 2 219000304 219000304 C T CXCR2 Silent p.F260F 0.55 TCGA-YD-A89C-06 2 219394761 219394761 G A USP37 Missense_Mutation p.L261F 0.29 tolerated(0.49) benign(0.149) TCGA-YD-A89C-06 2 219508354 219508354 G A ZNF142 Missense_Mutation p.S962F 0.52 tolerated(0.27) possibly_damaging(0.485) TCGA-YD-A89C-06 2 219695074 219695074 G A PRKAG3 Missense_Mutation p.T87I 0.28 tolerated_low_confidence(0.08) benign(0.004) TCGA-YD-A89C-06 2 220115661 220115661 C T TUBA4A Missense_Mutation p.E254K 0.54 deleterious_low_confidence(0) benign(0.308) TCGA-YD-A89C-06 2 220370073 220370073 C T GMPPA Silent p.I248I 0.19 TCGA-YD-A89C-06 2 220418326 220418326 G A OBSL1 Silent p.S1653S 0.47 TCGA-YD-A89C-06 2 220493228 220493228 C T SLC4A3 Silent p.I51I 0.32 TCGA-YD-A89C-06 2 226273796 226273796 G A NYAP2 Missense_Mutation p.R67K 0.53 tolerated(0.75) benign(0.003) TCGA-YD-A89C-06 2 226447534 226447534 G A NYAP2 Silent p.R467R 0.24 TCGA-YD-A89C-06 2 227983386 227983386 C T COL4A4 Missense_Mutation p.G155E 0.18 probably_damaging(1) TCGA-YD-A89C-06 2 228855734 228855734 C T SPHKAP Silent p.Q1647Q 0.40 TCGA-YD-A89C-06 2 228881923 228881923 C T SPHKAP Missense_Mutation p.S1216N 0.57 deleterious(0) probably_damaging(0.978) TCGA-YD-A89C-06 2 230450616 230450616 G A DNER Missense_Mutation p.L269F 0.53 deleterious(0.01) probably_damaging(0.964) TCGA-YD-A89C-06 2 231936974 231936974 C T PSMD1 Silent p.L242L 0.27 TCGA-YD-A89C-06 2 232263162 232263162 C T B3GNT7 Silent p.F244F 0.24 TCGA-YD-A89C-06 2 233398934 233398934 G A CHRND Missense_Mutation p.R418H 0.27 tolerated(0.25) possibly_damaging(0.893) TCGA-YD-A89C-06 2 233415403 233415403 C T EIF4E2 5'UTR 0.33 TCGA-YD-A89C-06 2 234669722 234669722 T C UGT1A8 Intron 0.58 TCGA-YD-A89C-06 2 234749872 234749872 G A HJURP Silent p.S518S 0.54 TCGA-YD-A89C-06 2 234846110 234846110 C T TRPM8 Missense_Mutation p.A102V 0.26 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 2 237489579 237489579 G A ACKR3 Silent p.K157K 0.27 TCGA-YD-A89C-06 2 238290137 238290137 C T COL6A3 Missense_Mutation p.E440K 0.28 probably_damaging(0.953) TCGA-YD-A89C-06 2 24110766 24110766 G A ATAD2B Missense_Mutation p.R170C 0.22 deleterious(0) possibly_damaging(0.87) TCGA-YD-A89C-06 2 242194809 242194809 A G HDLBP Silent p.L354L 0.51 TCGA-YD-A89C-06 2 242523865 242523865 G A THAP4 3'UTR 0.62 TCGA-YD-A89C-06 2 242758321 242758321 C T NEU4 Missense_Mutation p.P481S 0.44 tolerated(0.86) benign(0.02) TCGA-YD-A89C-06 2 24493594 24493594 G A ITSN2 Silent p.P767P 0.20 TCGA-YD-A89C-06 2 25016124 25016124 G A PTRHD1 Silent p.S41S 0.49 TCGA-YD-A89C-06 2 26537418 26537418 C T GPR113 Silent p.K332K 0.66 TCGA-YD-A89C-06 2 27278025 27278025 G A AGBL5 Missense_Mutation p.R271Q 0.24 deleterious(0.04) possibly_damaging(0.487) TCGA-YD-A89C-06 2 27317352 27317352 C T KHK Silent p.L73L 0.51 TCGA-YD-A89C-06 2 27360191 27360191 G A C2orf53 Missense_Mutation p.P336L 0.26 tolerated(0.14) benign(0.025) TCGA-YD-A89C-06 2 27500791 27500791 G A DNAJC5G Missense_Mutation p.D95N 0.46 deleterious(0.05) benign(0.331) TCGA-YD-A89C-06 2 27550971 27550971 G A GTF3C2 Missense_Mutation p.P781L 0.30 tolerated(0.56) benign(0.057) TCGA-YD-A89C-06 2 29293525 29293525 G A C2orf71 Silent p.G1201G 0.54 TCGA-YD-A89C-06 2 29354187 29354187 C T CLIP4 Missense_Mutation p.S66L 0.31 deleterious(0) possibly_damaging(0.792) TCGA-YD-A89C-06 2 30977179 30977179 C T CAPN13 Silent p.K306K 0.48 TCGA-YD-A89C-06 2 32475322 32475322 C T NLRC4 Silent p.V537V 0.24 TCGA-YD-A89C-06 2 43519272 43519272 G A THADA Silent p.I1636I 0.14 TCGA-YD-A89C-06 2 43968138 43968138 C T PLEKHH2 Silent p.F1059F 0.32 TCGA-YD-A89C-06 2 48896960 48896960 G A STON1-GTF2A1L Missense_Mutation p.E1064K 0.25 deleterious(0) benign(0.358) TCGA-YD-A89C-06 2 50850516 50850516 G A NRXN1 Missense_Mutation p.P390L 0.56 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 2 54133754 54133754 G A PSME4 Missense_Mutation p.S975F 0.58 deleterious(0) possibly_damaging(0.759) TCGA-YD-A89C-06 2 58468496 58468496 C T FANCL 5'Flank 0.75 TCGA-YD-A89C-06 2 60689260 60689260 G A BCL11A Missense_Mutation p.P263S 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-YD-A89C-06 2 63175798 63175798 C T EHBP1 Missense_Mutation p.S641F 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.474) TCGA-YD-A89C-06 2 63280069 63280069 C T OTX1 5'UTR 0.58 TCGA-YD-A89C-06 2 63283543 63283543 C T OTX1 3'UTR 0.28 TCGA-YD-A89C-06 2 69093341 69093341 C T BMP10 Missense_Mutation p.D233N 0.49 tolerated(0.4) benign(0.024) TCGA-YD-A89C-06 2 73118515 73118515 C T SPR Missense_Mutation p.T212I 0.26 tolerated(0.21) benign(0.038) TCGA-YD-A89C-06 2 73118516 73118516 C T SPR Silent p.T212T 0.26 TCGA-YD-A89C-06 2 73675516 73675516 C T ALMS1 Missense_Mutation p.S620F 0.49 benign(0.317) TCGA-YD-A89C-06 2 73679098 73679098 C T ALMS1 Missense_Mutation p.S1814F 0.55 benign(0.211) TCGA-YD-A89C-06 2 73829450 73829450 G A ALMS1 Missense_Mutation p.E4084K 0.18 benign(0.341) TCGA-YD-A89C-06 2 74087176 74087176 C T STAMBP Intron 0.59 TCGA-YD-A89C-06 2 74542108 74542108 G A SLC4A5 Missense_Mutation p.H15Y 0.22 tolerated_low_confidence(1) benign(0.034) TCGA-YD-A89C-06 2 77745770 77745770 G A LRRTM4 Nonsense_Mutation p.Q409* 0.25 TCGA-YD-A89C-06 2 79255008 79255008 C T REG3G Missense_Mutation p.P137S 0.27 deleterious(0.04) probably_damaging(0.991) TCGA-YD-A89C-06 2 84518435 84518435 C T FUNDC2P2 RNA 0.59 TCGA-YD-A89C-06 2 85549768 85549768 G A TGOLN2 3'UTR 0.65 TCGA-YD-A89C-06 2 85554321 85554321 G A TGOLN2 Silent p.V178V 0.52 TCGA-YD-A89C-06 2 85925837 85925837 C T GNLY 3'UTR 0.64 TCGA-YD-A89C-06 2 88472874 88472874 C T THNSL2 Missense_Mutation p.P69S 0.72 tolerated(0.13) benign(0.023) TCGA-YD-A89C-06 2 88472875 88472875 C T THNSL2 Missense_Mutation p.P69L 0.73 tolerated(0.05) benign(0.053) TCGA-YD-A89C-06 2 88890561 88890561 G A EIF2AK3 Silent p.F259F 0.29 TCGA-YD-A89C-06 2 89160117 89160117 C T IGKJ5 Missense_Mutation p.%3D 0.22 TCGA-YD-A89C-06 2 89986866 89986866 C T IGKV2D-29 Silent p.L49L 0.56 TCGA-YD-A89C-06 2 96809487 96809487 G A DUSP2 3'UTR 0.29 TCGA-YD-A89C-06 2 97261325 97261325 G A KANSL3 3'UTR 0.52 TCGA-YD-A89C-06 3 100373650 100373650 T A GPR128 Intron 0.38 TCGA-YD-A89C-06 3 100413801 100413801 G A GPR128 Missense_Mutation p.E784K 0.37 tolerated(0.12) benign(0.174) TCGA-YD-A89C-06 3 10370615 10370615 G A ATP2B2 Silent p.S1205S 0.29 TCGA-YD-A89C-06 3 107779599 107779599 G A CD47 Silent p.F197F 0.29 TCGA-YD-A89C-06 3 108475956 108475956 G A RETNLB Missense_Mutation p.S26F 0.45 deleterious(0) probably_damaging(0.917) TCGA-YD-A89C-06 3 108476006 108476006 G A RETNLB Silent p.L9L 0.45 TCGA-YD-A89C-06 3 108476114 108476114 G A RETNLB 5'UTR 0.50 TCGA-YD-A89C-06 3 108724054 108724054 C T MORC1 Missense_Mutation p.E626K 0.44 tolerated(0.25) benign(0.025) TCGA-YD-A89C-06 3 111264048 111264048 C T CD96 Missense_Mutation p.P73S 0.32 deleterious(0.02) benign(0.399) TCGA-YD-A89C-06 3 11301071 11301071 C T HRH1 Silent p.F116F 0.33 TCGA-YD-A89C-06 3 113955925 113955925 C T ZNF80 5'UTR 0.40 TCGA-YD-A89C-06 3 119367299 119367299 G A POPDC2 Missense_Mutation p.P273S 0.33 tolerated(0.07) benign(0.082) TCGA-YD-A89C-06 3 119379237 119379237 G A POPDC2 Missense_Mutation p.L12F 0.31 deleterious(0.05) possibly_damaging(0.646) TCGA-YD-A89C-06 3 120320288 120320288 C T NDUFB4 Intron 0.31 TCGA-YD-A89C-06 3 121200418 121200418 C A POLQ Splice_Site p.X2071_splice 0.36 TCGA-YD-A89C-06 3 121305296 121305296 C T ARGFX Missense_Mutation p.S266F 0.43 tolerated(0.1) possibly_damaging(0.652) TCGA-YD-A89C-06 3 121351924 121351924 G A HCLS1 Missense_Mutation p.T333I 0.25 tolerated(0.18) possibly_damaging(0.507) TCGA-YD-A89C-06 3 121641642 121641642 C T SLC15A2 Silent p.F267F 0.22 TCGA-YD-A89C-06 3 122002790 122002790 C T CASR Silent p.S673S 0.32 TCGA-YD-A89C-06 3 124210223 124210223 C T KALRN Silent p.A1545A 0.31 TCGA-YD-A89C-06 3 124739846 124739846 C T HEG1 Missense_Mutation p.V348I 0.17 tolerated(0.1) benign(0.03) TCGA-YD-A89C-06 3 124952776 124952776 G A ZNF148 Missense_Mutation p.S265F 0.36 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 3 125651528 125651528 C T ALG1L Missense_Mutation p.G42E 0.35 tolerated(0.13) possibly_damaging(0.863) TCGA-YD-A89C-06 3 129270184 129270184 G C H1FOO 3'UTR 0.39 TCGA-YD-A89C-06 3 130188165 130188165 C T COL6A5 Silent p.S2439S 0.28 TCGA-YD-A89C-06 3 130287019 130287019 C T COL6A6 Missense_Mutation p.R658W 0.33 deleterious(0.04) benign(0.06) TCGA-YD-A89C-06 3 130871495 130871495 C T NEK11 Missense_Mutation p.S273L 0.36 deleterious(0.02) possibly_damaging(0.493) TCGA-YD-A89C-06 3 131300465 131300465 C T CPNE4 Silent p.K275K 0.42 TCGA-YD-A89C-06 3 132051138 132051138 C T ACPP Silent p.L136L 0.36 TCGA-YD-A89C-06 3 1367505 1367505 C T CNTN6 Missense_Mutation p.P318L 0.38 tolerated(0.08) probably_damaging(0.988) TCGA-YD-A89C-06 3 138116236 138116236 C T MRAS Silent p.F88F 0.33 TCGA-YD-A89C-06 3 141235266 141235266 C T RASA2 Silent p.L116L 0.40 TCGA-YD-A89C-06 3 142151594 142151594 G A XRN1 Missense_Mutation p.R73C 0.30 deleterious(0) benign(0.32) TCGA-YD-A89C-06 3 146167026 146167026 C T PLSCR2 Missense_Mutation p.M277I 0.42 tolerated(0.35) benign(0.098) TCGA-YD-A89C-06 3 14756890 14756890 G A C3orf20 Missense_Mutation p.E470K 0.41 tolerated(0.16) probably_damaging(0.928) TCGA-YD-A89C-06 3 14861823 14861823 C T FGD5 Silent p.V415V 0.29 TCGA-YD-A89C-06 3 148927006 148927006 C T CP Missense_Mutation p.R258K 0.31 tolerated(1) benign(0.002) TCGA-YD-A89C-06 3 151017929 151017929 G A GPR87 5'UTR 0.31 TCGA-YD-A89C-06 3 151055861 151055861 G A P2RY12 Missense_Mutation p.P258L 0.48 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 3 151532070 151532070 G A AADAC Silent p.L40L 0.39 TCGA-YD-A89C-06 3 154859891 154859891 C T MME Missense_Mutation p.P357S 0.36 tolerated(0.78) benign(0.001) TCGA-YD-A89C-06 3 15778590 15778590 G A ANKRD28 Nonsense_Mutation p.R138* 0.37 TCGA-YD-A89C-06 3 157816029 157816029 G A SHOX2 Silent p.H285H 0.37 TCGA-YD-A89C-06 3 160804305 160804305 G A B3GALNT1 Silent p.L80L 0.45 TCGA-YD-A89C-06 3 164905576 164905576 C T SLITRK3 3'UTR 0.75 TCGA-YD-A89C-06 3 167183435 167183435 C T SERPINI2 Missense_Mutation p.E169K 0.27 tolerated(0.16) benign(0.207) TCGA-YD-A89C-06 3 168833830 168833830 C T MECOM Silent p.E487E 0.43 TCGA-YD-A89C-06 3 170244613 170244613 C T SLC7A14 Missense_Mutation p.G38E 0.40 tolerated(0.23) benign(0.024) TCGA-YD-A89C-06 3 17056385 17056385 C T PLCL2 Silent p.I874I 0.38 TCGA-YD-A89C-06 3 170843915 170843915 G A TNIK Missense_Mutation p.S600F 0.41 deleterious(0.02) possibly_damaging(0.733) TCGA-YD-A89C-06 3 170893075 170893075 G A TNIK Missense_Mutation p.R247W 0.24 deleterious(0.01) unknown(0) TCGA-YD-A89C-06 3 172241266 172241266 G A TNFSF10 5'UTR 0.70 TCGA-YD-A89C-06 3 175293915 175293915 C T NAALADL2 Silent p.F580F 0.30 TCGA-YD-A89C-06 3 180381713 180381713 C T CCDC39 Missense_Mutation p.R51Q 0.31 tolerated(0.12) possibly_damaging(0.742) TCGA-YD-A89C-06 3 184648255 184648255 C T VPS8 Intron 0.47 TCGA-YD-A89C-06 3 184769694 184769694 C T VPS8 Missense_Mutation p.R1390C 0.49 deleterious(0.03) possibly_damaging(0.517) TCGA-YD-A89C-06 3 188584022 188584022 C T LPP Missense_Mutation p.P482L 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 3 189582155 189582155 G A TP63 Silent p.T238T 0.37 TCGA-YD-A89C-06 3 189587118 189587118 C T TP63 Missense_Mutation p.R379C 0.30 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 3 190030677 190030677 C T CLDN1 Silent p.A124A 0.35 TCGA-YD-A89C-06 3 191093049 191093049 C T CCDC50 Missense_Mutation p.P216L 0.43 deleterious(0.01) benign(0.372) TCGA-YD-A89C-06 3 193183866 193183866 C T ATP13A4 Missense_Mutation p.G407E 0.40 tolerated(0.26) possibly_damaging(0.862) TCGA-YD-A89C-06 3 194079977 194079977 C T LRRC15 3'UTR 0.19 TCGA-YD-A89C-06 3 19492668 19492668 G A KCNH8 Missense_Mutation p.E533K 0.36 deleterious(0.01) probably_damaging(0.974) TCGA-YD-A89C-06 3 195956812 195956812 G A SLC51A Nonsense_Mutation p.W220* 0.35 TCGA-YD-A89C-06 3 196054269 196054269 C T TM4SF19 Missense_Mutation p.G65S 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 3 196387003 196387003 C T NRROS Silent p.S163S 0.36 TCGA-YD-A89C-06 3 196554185 196554185 C T PAK2 Missense_Mutation p.S490L 0.47 deleterious(0) benign(0.37) TCGA-YD-A89C-06 3 21462923 21462923 G A ZNF385D Missense_Mutation p.S324L 0.16 deleterious(0.03) benign(0.016) TCGA-YD-A89C-06 3 24206599 24206599 G A THRB Intron 0.37 TCGA-YD-A89C-06 3 3111974 3111974 C T IL5RA Missense_Mutation p.E400K 0.32 tolerated(0.07) benign(0.139) TCGA-YD-A89C-06 3 33906822 33906822 G A PDCD6IP Missense_Mutation p.G783R 0.31 tolerated(0.51) benign(0.189) TCGA-YD-A89C-06 3 36756884 36756884 C T DCLK3 Missense_Mutation p.V628M 0.27 deleterious(0) benign(0.104) TCGA-YD-A89C-06 3 36872496 36872496 C T TRANK1 Missense_Mutation p.E2816K 0.35 tolerated(0.13) benign(0.11) TCGA-YD-A89C-06 3 36872941 36872941 G A TRANK1 Silent p.S2667S 0.28 TCGA-YD-A89C-06 3 36873772 36873772 C T TRANK1 Missense_Mutation p.M2390I 0.43 tolerated(0.09) benign(0.008) TCGA-YD-A89C-06 3 36897501 36897501 C T TRANK1 Missense_Mutation p.E1194K 0.38 deleterious(0.02) possibly_damaging(0.74) TCGA-YD-A89C-06 3 37050302 37050302 C A MLH1 Intron 0.33 TCGA-YD-A89C-06 3 38601801 38601801 C T SCN5A Missense_Mutation p.G1361E 0.28 tolerated(0.2) probably_damaging(1) TCGA-YD-A89C-06 3 38674678 38674678 C T SCN5A Missense_Mutation p.E41K 0.21 tolerated(0.8) possibly_damaging(0.64) TCGA-YD-A89C-06 3 38743371 38743371 C T SCN10A Nonsense_Mutation p.W1539* 0.44 TCGA-YD-A89C-06 3 38770160 38770160 G A SCN10A Missense_Mutation p.S838F 0.42 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 3 38888317 38888317 C T SCN11A Missense_Mutation p.M1748I 0.33 deleterious(0.03) benign(0) TCGA-YD-A89C-06 3 38913080 38913080 C T SCN11A Silent p.G1205G 0.25 TCGA-YD-A89C-06 3 38936375 38936375 C T SCN11A Silent p.R828R 0.32 TCGA-YD-A89C-06 3 39307985 39307985 C T CX3CR1 Missense_Mutation p.E38K 0.32 tolerated(0.09) benign(0.006) TCGA-YD-A89C-06 3 40469087 40469087 G A ENTPD3 3'UTR 0.42 TCGA-YD-A89C-06 3 425535 425535 C T CHL1 Missense_Mutation p.A738V 0.40 deleterious(0) possibly_damaging(0.852) TCGA-YD-A89C-06 3 42798682 42798682 G A CCDC13 Silent p.H82H 0.35 TCGA-YD-A89C-06 3 44951707 44951707 G A TGM4 Missense_Mutation p.G485R 0.29 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 3 46399771 46399771 T A CCR2 Silent p.V251V 0.33 TCGA-YD-A89C-06 3 48228222 48228222 C T CDC25A Missense_Mutation p.R73K 0.38 tolerated(0.1) probably_damaging(0.997) TCGA-YD-A89C-06 3 48423498 48423498 G A FBXW12 Nonsense_Mutation p.W406* 0.34 TCGA-YD-A89C-06 3 48605028 48605028 C T COL7A1 Silent p.K2675K 0.27 TCGA-YD-A89C-06 3 48631960 48631960 G A COL7A1 Missense_Mutation p.A36V 0.58 unknown(0) TCGA-YD-A89C-06 3 49898443 49898443 C T CAMKV Missense_Mutation p.V191M 0.22 deleterious(0) benign(0.244) TCGA-YD-A89C-06 3 50416583 50416583 C T CACNA2D2 Silent p.T400T 0.38 TCGA-YD-A89C-06 3 51297610 51297610 C T DOCK3 Silent p.F736F 0.34 TCGA-YD-A89C-06 3 51747151 51747151 C T GRM2 Silent p.P371P 0.34 TCGA-YD-A89C-06 3 52324707 52324707 C T GLYCTK Missense_Mutation p.R117C 0.26 deleterious(0.03) benign(0.053) TCGA-YD-A89C-06 3 52437589 52437589 G A BAP1 Silent p.T524T 0.34 TCGA-YD-A89C-06 3 52610697 52610697 A G PBRM1 Missense_Mutation p.V1159A 0.39 tolerated(0.14) benign(0.294) TCGA-YD-A89C-06 3 52821994 52821994 C T ITIH1 Intron 0.34 TCGA-YD-A89C-06 3 53219679 53219679 C T PRKCD Silent p.F316F 0.35 TCGA-YD-A89C-06 3 53836177 53836177 C T CACNA1D Silent p.T1824T 0.33 TCGA-YD-A89C-06 3 56468736 56468736 A T ERC2 Missense_Mutation p.S100R 0.34 deleterious(0) probably_damaging(0.933) TCGA-YD-A89C-06 3 56468960 56468960 G A ERC2 Missense_Mutation p.R26C 0.40 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 3 58190562 58190562 G A DNASE1L3 Nonsense_Mutation p.Q123* 0.54 TCGA-YD-A89C-06 3 58376918 58376918 C T PXK Nonsense_Mutation p.Q171* 0.36 TCGA-YD-A89C-06 3 64133272 64133272 G A PRICKLE2 Silent p.L298L 0.31 TCGA-YD-A89C-06 3 66434584 66434584 C A LRIG1 Missense_Mutation p.K634N 0.33 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 3 71247126 71247126 G A FOXP1 Missense_Mutation p.P92S 0.29 deleterious_low_confidence(0) benign(0.192) TCGA-YD-A89C-06 3 72957521 72957521 G A GXYLT2 Silent p.R93R 0.38 TCGA-YD-A89C-06 3 77695272 77695272 A G ROBO2 3'UTR 0.67 TCGA-YD-A89C-06 3 78680360 78680360 G A ROBO1 Missense_Mutation p.P1193S 0.42 tolerated(0.16) benign(0.194) TCGA-YD-A89C-06 3 85961646 85961646 C T CADM2 Missense_Mutation p.S211F 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-YD-A89C-06 3 8787489 8787489 C T CAV3 Missense_Mutation p.P131L 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 3 89391080 89391080 C T EPHA3 Silent p.F382F 0.34 TCGA-YD-A89C-06 3 93624738 93624738 G A PROS1 Missense_Mutation p.P164L 0.43 deleterious(0.01) benign(0.157) TCGA-YD-A89C-06 3 97124075 97124075 C T EPHA6 Missense_Mutation p.S563F 0.44 deleterious(0) benign(0.198) TCGA-YD-A89C-06 3 9776058 9776058 C T BRPF1 Silent p.P78P 0.37 TCGA-YD-A89C-06 3 9780834 9780834 C T BRPF1 Nonsense_Mutation p.R251* 0.35 TCGA-YD-A89C-06 3 97852087 97852087 C T OR5H1 Silent p.I182I 0.31 TCGA-YD-A89C-06 3 97852400 97852400 C T OR5H1 Missense_Mutation p.P287S 0.40 deleterious(0.01) possibly_damaging(0.671) TCGA-YD-A89C-06 3 97983363 97983363 C T OR5H6 Missense_Mutation p.L79F 0.37 deleterious(0) probably_damaging(0.98) TCGA-YD-A89C-06 3 97983679 97983679 T A OR5H6 Missense_Mutation p.F184Y 0.36 deleterious(0.02) probably_damaging(0.951) TCGA-YD-A89C-06 3 9958953 9958953 G A IL17RC 5'UTR 0.38 TCGA-YD-A89C-06 4 100340163 100340163 C T ADH7 Nonsense_Mutation p.W334* 0.35 TCGA-YD-A89C-06 4 10503026 10503026 A T CLNK Missense_Mutation p.F332I 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 4 105393441 105393441 C T CXXC4 3'UTR 0.31 TCGA-YD-A89C-06 4 107845044 107845044 C T DKK2 3'UTR 0.35 TCGA-YD-A89C-06 4 107845782 107845782 C T DKK2 Missense_Mutation p.R150Q 0.32 tolerated(0.57) benign(0.062) TCGA-YD-A89C-06 4 119259422 119259422 C T PRSS12 Missense_Mutation p.E184K 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 4 120214143 120214143 C T USP53 Missense_Mutation p.S1000F 0.41 tolerated_low_confidence(0.11) benign(0.014) TCGA-YD-A89C-06 4 122082315 122082315 C T TNIP3 Silent p.R118R 0.25 TCGA-YD-A89C-06 4 122789193 122789193 T C BBS7 Silent p.V15V 0.36 TCGA-YD-A89C-06 4 122853464 122853464 C T TRPC3 Missense_Mutation p.E317K 0.43 deleterious(0) possibly_damaging(0.779) TCGA-YD-A89C-06 4 123336758 123336758 A T ADAD1 Nonsense_Mutation p.K492* 0.33 TCGA-YD-A89C-06 4 126238899 126238899 G A FAT4 Missense_Mutation p.G445R 0.24 benign(0.052) TCGA-YD-A89C-06 4 126238900 126238900 G A FAT4 Missense_Mutation p.G445E 0.26 possibly_damaging(0.507) TCGA-YD-A89C-06 4 126370740 126370740 G A FAT4 Missense_Mutation p.D2857N 0.40 probably_damaging(0.995) TCGA-YD-A89C-06 4 126411668 126411668 C T FAT4 Missense_Mutation p.P4564L 0.35 probably_damaging(0.998) TCGA-YD-A89C-06 4 129043343 129043343 G A LARP1B Silent p.K508K 0.30 TCGA-YD-A89C-06 4 129099585 129099585 G A LARP1B Splice_Site p.X562_splice 0.37 TCGA-YD-A89C-06 4 140297599 140297599 T C NAA15 Silent p.L676L 0.34 TCGA-YD-A89C-06 4 140375432 140375432 C T RAB33B Missense_Mutation p.P28L 0.41 tolerated_low_confidence(0.22) probably_damaging(0.981) TCGA-YD-A89C-06 4 141555206 141555206 C T TBC1D9 Nonsense_Mutation p.W881* 0.17 TCGA-YD-A89C-06 4 145573802 145573802 G A HHIP Missense_Mutation p.E109K 0.32 deleterious(0) probably_damaging(0.969) TCGA-YD-A89C-06 4 146572211 146572211 C T MMAA Intron 0.30 TCGA-YD-A89C-06 4 146823358 146823358 G A ZNF827 Silent p.L351L 0.33 TCGA-YD-A89C-06 4 156136061 156136061 C T NPY2R Missense_Mutation p.L324F 0.39 deleterious(0) benign(0.41) TCGA-YD-A89C-06 4 157693855 157693855 A C PDGFC Missense_Mutation p.F229C 0.40 tolerated(0.1) benign(0.379) TCGA-YD-A89C-06 4 158254056 158254056 G A GRIA2 Missense_Mutation p.R323Q 0.32 deleterious(0.03) possibly_damaging(0.841) TCGA-YD-A89C-06 4 159136417 159136417 C T TMEM144 Missense_Mutation p.P62S 0.46 tolerated(0.07) benign(0.391) TCGA-YD-A89C-06 4 164271901 164271901 T C NPY5R Missense_Mutation p.L159P 0.34 tolerated(0.24) probably_damaging(1) TCGA-YD-A89C-06 4 164394547 164394547 G A TKTL2 Missense_Mutation p.P114S 0.39 deleterious(0) possibly_damaging(0.854) TCGA-YD-A89C-06 4 164534616 164534616 C T MARCH1 Intron 0.40 TCGA-YD-A89C-06 4 166964427 166964427 G A TLL1 Silent p.A460A 0.39 TCGA-YD-A89C-06 4 174169149 174169149 G A GALNT7 Missense_Mutation p.D49N 0.27 tolerated_low_confidence(0.58) benign(0) TCGA-YD-A89C-06 4 1746454 1746454 C T TACC3 Silent p.I782I 0.29 TCGA-YD-A89C-06 4 175565127 175565127 C T GLRA3 Missense_Mutation p.G402D 0.36 tolerated(0.27) benign(0.002) TCGA-YD-A89C-06 4 177113804 177113804 C T SPATA4 Missense_Mutation p.R221K 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-YD-A89C-06 4 178257445 178257445 C T NEIL3 Silent p.L199L 0.31 TCGA-YD-A89C-06 4 183714678 183714678 G A TENM3 Missense_Mutation p.E2285K 0.31 deleterious(0) possibly_damaging(0.636) TCGA-YD-A89C-06 4 186545280 186545280 G A SORBS2 Missense_Mutation p.R531C 0.28 tolerated(0.25) benign(0.016) TCGA-YD-A89C-06 4 187115733 187115733 C T CYP4V2 Silent p.P98P 0.46 TCGA-YD-A89C-06 4 187126411 187126411 C T CYP4V2 Missense_Mutation p.P349S 0.37 deleterious(0.02) probably_damaging(0.941) TCGA-YD-A89C-06 4 187130109 187130109 C T CYP4V2 Missense_Mutation p.S394F 0.40 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 4 187178397 187178397 C T KLKB1 Silent p.L535L 0.49 TCGA-YD-A89C-06 4 189012990 189012990 G A TRIML2 Missense_Mutation p.P234L 0.34 tolerated(0.07) benign(0.392) TCGA-YD-A89C-06 4 189068403 189068403 C T TRIML1 Silent p.L428L 0.37 TCGA-YD-A89C-06 4 20525455 20525455 C T SLIT2 Silent p.L401L 0.38 TCGA-YD-A89C-06 4 25665839 25665839 G A SLC34A2 Missense_Mutation p.G89E 0.32 tolerated(0.18) benign(0.076) TCGA-YD-A89C-06 4 38828727 38828727 C T TLR6 Missense_Mutation p.E790K 0.43 tolerated(0.15) benign(0.026) TCGA-YD-A89C-06 4 40350985 40350985 C T CHRNA9 Missense_Mutation p.T151I 0.44 tolerated(0.4) probably_damaging(0.999) TCGA-YD-A89C-06 4 419810 419810 G A ABCA11P RNA 0.46 TCGA-YD-A89C-06 4 44719220 44719220 G A GNPDA2 Missense_Mutation p.L107F 0.36 deleterious_low_confidence(0) possibly_damaging(0.615) TCGA-YD-A89C-06 4 46060384 46060384 C T GABRG1 Missense_Mutation p.D256N 0.27 deleterious(0.05) benign(0.424) TCGA-YD-A89C-06 4 46973144 46973144 G A GABRA4 Missense_Mutation p.S277L 0.23 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 4 47788781 47788781 C T CORIN Missense_Mutation p.D124N 0.30 tolerated(0.35) benign(0.001) TCGA-YD-A89C-06 4 524495 524495 G T PIGG Silent p.V844V 0.35 TCGA-YD-A89C-06 4 55946085 55946085 G A KDR 3'UTR 0.32 TCGA-YD-A89C-06 4 5844870 5844870 C T CRMP1 Missense_Mutation p.E328K 0.38 tolerated(0.15) benign(0.266) TCGA-YD-A89C-06 4 6599024 6599024 C T MAN2B2 Silent p.V414V 0.42 TCGA-YD-A89C-06 4 69433585 69433585 C T UGT2B17 Missense_Mutation p.M206I 0.42 deleterious(0) probably_damaging(0.956) TCGA-YD-A89C-06 4 69512776 69512776 G A UGT2B15 3'UTR 0.41 TCGA-YD-A89C-06 4 69536108 69536108 A C UGT2B15 Missense_Mutation p.Y77D 0.40 deleterious(0) possibly_damaging(0.885) TCGA-YD-A89C-06 4 69811024 69811024 C T UGT2A3 Silent p.K288K 0.38 TCGA-YD-A89C-06 4 69974033 69974033 G A UGT2B7 Missense_Mutation p.D435N 0.30 tolerated(0.82) benign(0.052) TCGA-YD-A89C-06 4 69978412 69978412 C T UGT2B7 Silent p.F516F 0.39 TCGA-YD-A89C-06 4 70160266 70160266 G A UGT2B28 Missense_Mutation p.M443I 0.38 deleterious(0.03) benign(0.013) TCGA-YD-A89C-06 4 70160562 70160562 G A UGT2B28 3'UTR 0.30 TCGA-YD-A89C-06 4 70504760 70504760 G A UGT2A2 Missense_Mutation p.S200F 0.17 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 4 70505316 70505316 G A UGT2A2 Nonsense_Mutation p.Q15* 0.36 TCGA-YD-A89C-06 4 71509981 71509981 A C ENAM Missense_Mutation p.R946S 0.36 deleterious(0) possibly_damaging(0.844) TCGA-YD-A89C-06 4 71844867 71844867 C T MOB1B Silent p.F149F 0.30 TCGA-YD-A89C-06 4 73156593 73156593 C T ADAMTS3 Nonsense_Mutation p.W970* 0.28 TCGA-YD-A89C-06 4 74351594 74351594 G A AFM Missense_Mutation p.E96K 0.26 tolerated(0.06) benign(0.175) TCGA-YD-A89C-06 4 74354376 74354376 C T AFM Missense_Mutation p.P248L 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 4 75938061 75938061 C T PARM1 Missense_Mutation p.S157L 0.38 tolerated(0.08) possibly_damaging(0.578) TCGA-YD-A89C-06 4 7666085 7666085 C T SORCS2 Missense_Mutation p.R320W 0.44 tolerated(0.08) benign(0.02) TCGA-YD-A89C-06 4 77660171 77660171 G A SHROOM3 Missense_Mutation p.R282H 0.31 tolerated(0.3) benign(0.003) TCGA-YD-A89C-06 4 77661651 77661651 G A SHROOM3 Silent p.G775G 0.45 TCGA-YD-A89C-06 4 79403587 79403587 G A FRAS1 Missense_Mutation p.E2884K 0.36 possibly_damaging(0.897) TCGA-YD-A89C-06 4 79832434 79832434 A C BMP2K Missense_Mutation p.E911D 0.41 tolerated_low_confidence(1) unknown(0) TCGA-YD-A89C-06 4 81123414 81123414 G A PRDM8 Silent p.R266R 0.55 TCGA-YD-A89C-06 4 81187949 81187949 G C FGF5 5'UTR 0.35 TCGA-YD-A89C-06 4 81207642 81207642 C T FGF5 Missense_Mutation p.P208L 0.29 deleterious(0.03) probably_damaging(0.968) TCGA-YD-A89C-06 4 8305947 8305947 C T HTRA3 Silent p.F379F 0.24 TCGA-YD-A89C-06 4 84511391 84511391 C T AGPAT9 Silent p.N228N 0.40 TCGA-YD-A89C-06 4 8607826 8607826 C T CPZ Missense_Mutation p.P274S 0.46 tolerated(0.29) benign(0.042) TCGA-YD-A89C-06 4 88583217 88583217 G A DMP1 Missense_Mutation p.G96E 0.50 deleterious(0.03) probably_damaging(0.996) TCGA-YD-A89C-06 4 88766555 88766555 A C MEPE Missense_Mutation p.I179L 0.31 deleterious(0.04) benign(0.001) TCGA-YD-A89C-06 4 90856138 90856138 C T MMRN1 Missense_Mutation p.S436L 0.35 tolerated(0.16) benign(0.015) TCGA-YD-A89C-06 4 93511311 93511311 G A GRID2 Missense_Mutation p.D40N 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-YD-A89C-06 4 95496864 95496864 G A PDLIM5 Intron 0.38 TCGA-YD-A89C-06 5 101631672 101631672 G A SLCO4C1 Nonsense_Mutation p.Q99* 0.31 TCGA-YD-A89C-06 5 102442572 102442572 G A GIN1 Missense_Mutation p.R61C 0.32 tolerated(0.05) benign(0.022) TCGA-YD-A89C-06 5 111576483 111576483 C T EPB41L4A Missense_Mutation p.E274K 0.35 deleterious(0.02) benign(0.016) TCGA-YD-A89C-06 5 115298681 115298681 G A AQPEP Missense_Mutation p.G123R 0.31 tolerated(0.53) benign(0.004) TCGA-YD-A89C-06 5 115298682 115298682 G C AQPEP Missense_Mutation p.G123A 0.33 tolerated(0.84) benign(0.002) TCGA-YD-A89C-06 5 121488344 121488344 G A ZNF474 Missense_Mutation p.R220K 0.43 tolerated(0.69) benign(0.046) TCGA-YD-A89C-06 5 121759081 121759081 C T SNCAIP Missense_Mutation p.H217Y 0.34 deleterious(0.02) benign(0.003) TCGA-YD-A89C-06 5 126755874 126755874 G A MEGF10 Missense_Mutation p.G522E 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-YD-A89C-06 5 127729059 127729059 C T FBN2 Missense_Mutation p.E412K 0.51 deleterious(0.04) possibly_damaging(0.482) TCGA-YD-A89C-06 5 127730817 127730817 G A FBN2 Missense_Mutation p.S410F 0.30 deleterious(0) possibly_damaging(0.879) TCGA-YD-A89C-06 5 128362989 128362989 C T SLC27A6 Silent p.F473F 0.29 TCGA-YD-A89C-06 5 130815352 130815352 G A RAPGEF6 Silent p.I645I 0.40 TCGA-YD-A89C-06 5 131607872 131607872 G A PDLIM4 Missense_Mutation p.G315S 0.29 deleterious(0.03) probably_damaging(1) TCGA-YD-A89C-06 5 134785200 134785200 C T TIFAB Missense_Mutation p.E144K 0.51 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 5 135188388 135188388 C T SLC25A48 Missense_Mutation p.P100L 0.32 deleterious(0) benign(0.075) TCGA-YD-A89C-06 5 135692440 135692440 G A TRPC7 Silent p.F212F 0.42 TCGA-YD-A89C-06 5 137621721 137621721 G A CDC25C Missense_Mutation p.P421L 0.37 tolerated(0.36) benign(0.06) TCGA-YD-A89C-06 5 137621722 137621722 G A CDC25C Missense_Mutation p.P421S 0.36 tolerated(0.15) possibly_damaging(0.463) TCGA-YD-A89C-06 5 13766133 13766133 C T DNAH5 Silent p.Q3351Q 0.46 TCGA-YD-A89C-06 5 137682394 137682394 C T FAM53C Missense_Mutation p.P309S 0.28 tolerated(0.16) benign(0.002) TCGA-YD-A89C-06 5 13776645 13776645 C T DNAH5 Silent p.G3092G 0.34 TCGA-YD-A89C-06 5 13788893 13788893 T A DNAH5 Missense_Mutation p.K2860I 0.37 possibly_damaging(0.703) TCGA-YD-A89C-06 5 13814753 13814753 G A DNAH5 Silent p.F2397F 0.33 TCGA-YD-A89C-06 5 13886124 13886124 T A DNAH5 Missense_Mutation p.S898C 0.34 possibly_damaging(0.7) TCGA-YD-A89C-06 5 139940975 139940975 G A APBB3 Silent p.I276I 0.33 TCGA-YD-A89C-06 5 140011872 140011872 C T CD14 Missense_Mutation p.G233R 0.34 deleterious(0.03) probably_damaging(1) TCGA-YD-A89C-06 5 140166761 140166761 G A PCDHA1 Missense_Mutation p.D296N 0.30 tolerated_low_confidence(0.43) benign(0.026) TCGA-YD-A89C-06 5 140203648 140203648 C T PCDHA5 Missense_Mutation p.P763L 0.33 tolerated_low_confidence(0.1) benign(0.026) TCGA-YD-A89C-06 5 140209348 140209348 G A PCDHA6 Missense_Mutation p.E558K 0.31 deleterious_low_confidence(0.02) benign(0.196) TCGA-YD-A89C-06 5 140209698 140209698 G A PCDHA6 Silent p.Q674Q 0.40 TCGA-YD-A89C-06 5 140220969 140220969 C T PCDHA8 Silent p.L21L 0.50 TCGA-YD-A89C-06 5 140229995 140229995 G A PCDHA9 Missense_Mutation p.E639K 0.40 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-YD-A89C-06 5 140255900 140255900 C T PCDHA12 Silent p.I281I 0.33 TCGA-YD-A89C-06 5 140309049 140309049 G A PCDHAC1 Intron 0.36 TCGA-YD-A89C-06 5 140431226 140431226 G A PCDHB1 Silent p.G57G 0.42 TCGA-YD-A89C-06 5 140431908 140431908 C T PCDHB1 Missense_Mutation p.P285S 0.43 tolerated(1) benign(0.043) TCGA-YD-A89C-06 5 140475968 140475968 C T PCDHB2 Missense_Mutation p.R532C 0.39 deleterious_low_confidence(0.02) benign(0.077) TCGA-YD-A89C-06 5 140536730 140536730 C T PCDHB17 Missense_Mutation p.S385F 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.495) TCGA-YD-A89C-06 5 140564371 140564371 C T PCDHB16 Missense_Mutation p.S746F 0.38 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-YD-A89C-06 5 140573011 140573011 C T PCDHB10 Missense_Mutation p.P296S 0.31 tolerated_low_confidence(0.3) benign(0.005) TCGA-YD-A89C-06 5 140580240 140580240 C T PCDHB11 Missense_Mutation p.S298F 0.27 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-YD-A89C-06 5 140682755 140682755 G A SLC25A2 Silent p.V226V 0.29 TCGA-YD-A89C-06 5 140683051 140683051 C A SLC25A2 Nonsense_Mutation p.E128* 0.37 TCGA-YD-A89C-06 5 140712369 140712369 C T PCDHGA1 Silent p.A706A 0.30 TCGA-YD-A89C-06 5 140730670 140730670 C T PCDHGB1 Silent p.S281S 0.37 TCGA-YD-A89C-06 5 140735431 140735431 C T PCDHGA4 Missense_Mutation p.R222C 0.36 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YD-A89C-06 5 140741318 140741318 C T PCDHGB2 Missense_Mutation p.S539L 0.25 deleterious(0.03) benign(0.344) TCGA-YD-A89C-06 5 140750372 140750372 C T PCDHGB3 Silent p.I137I 0.34 TCGA-YD-A89C-06 5 140767861 140767861 C T PCDHGB4 Missense_Mutation p.S137F 0.40 deleterious(0.04) benign(0.008) TCGA-YD-A89C-06 5 140789333 140789333 C T PCDHGB6 Missense_Mutation p.H522Y 0.55 tolerated(1) benign(0.371) TCGA-YD-A89C-06 5 140807696 140807696 C T PCDHGB6 Intron 0.31 TCGA-YD-A89C-06 5 141304153 141304153 C T KIAA0141 Silent p.P13P 0.27 TCGA-YD-A89C-06 5 143586846 143586846 C T KCTD16 Missense_Mutation p.P190L 0.41 deleterious(0) possibly_damaging(0.864) TCGA-YD-A89C-06 5 145439605 145439605 G A SH3RF2 Missense_Mutation p.G578R 0.30 tolerated(0.1) possibly_damaging(0.786) TCGA-YD-A89C-06 5 145849135 145849135 C T TCERG1 Silent p.I409I 0.39 TCGA-YD-A89C-06 5 145969704 145969704 C T PPP2R2B Missense_Mutation p.E383K 0.38 tolerated(0.05) benign(0.097) TCGA-YD-A89C-06 5 147020348 147020348 G A JAKMIP2 Silent p.D440D 0.41 TCGA-YD-A89C-06 5 147021310 147021310 G A JAKMIP2 Silent p.I414I 0.31 TCGA-YD-A89C-06 5 147806823 147806823 C T FBXO38 Nonsense_Mutation p.Q656* 0.33 TCGA-YD-A89C-06 5 148392295 148392295 G A SH3TC2 Missense_Mutation p.S1019F 0.37 deleterious(0) probably_damaging(0.99) TCGA-YD-A89C-06 5 148989236 148989236 C T ARHGEF37 Nonsense_Mutation p.Q146* 0.29 TCGA-YD-A89C-06 5 150310477 150310477 C T ZNF300P1 RNA 0.36 TCGA-YD-A89C-06 5 150696621 150696621 C T SLC36A2 Silent p.L403L 0.39 TCGA-YD-A89C-06 5 151784666 151784666 C T NMUR2 Silent p.G3G 0.32 TCGA-YD-A89C-06 5 153149962 153149962 G A GRIA1 Missense_Mutation p.G763R 0.33 deleterious(0.02) possibly_damaging(0.904) TCGA-YD-A89C-06 5 154244797 154244797 C T CNOT8 Missense_Mutation p.R55C 0.34 deleterious(0) probably_damaging(0.973) TCGA-YD-A89C-06 5 154272106 154272106 G A GEMIN5 Silent p.L1201L 0.28 TCGA-YD-A89C-06 5 154394997 154394997 G A KIF4B Silent p.V526V 0.43 TCGA-YD-A89C-06 5 15616128 15616128 C T FBXL7 Missense_Mutation p.S25L 0.41 tolerated(0.19) possibly_damaging(0.879) TCGA-YD-A89C-06 5 156589361 156589361 G A FAM71B 3'UTR 0.44 TCGA-YD-A89C-06 5 157078552 157078552 G A SOX30 Nonsense_Mutation p.R179* 0.47 TCGA-YD-A89C-06 5 157158411 157158411 G A THG1L 5'UTR 0.35 TCGA-YD-A89C-06 5 16067785 16067785 C T MARCH11 Missense_Mutation p.R335Q 0.28 tolerated(0.09) benign(0.015) TCGA-YD-A89C-06 5 16091137 16091137 G A MARCH11 Silent p.I249I 0.36 TCGA-YD-A89C-06 5 161576165 161576165 C T GABRG2 Missense_Mutation p.S365L 0.49 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 5 16670965 16670965 G A MYO10 Silent p.L1851L 0.44 TCGA-YD-A89C-06 5 167182030 167182030 G A TENM2 Intron 0.35 TCGA-YD-A89C-06 5 167689651 167689651 G A TENM2 Missense_Mutation p.G2721R 0.50 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 5 168176556 168176556 C T SLIT3 Silent p.G686G 0.29 TCGA-YD-A89C-06 5 169805964 169805964 G A KCNMB1 Missense_Mutation p.P107L 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 5 170722935 170722935 C T RANBP17 Silent p.L1029L 0.41 TCGA-YD-A89C-06 5 171765873 171765873 G A SH3PXD2B Missense_Mutation p.P746S 0.44 tolerated_low_confidence(0.11) benign(0.012) TCGA-YD-A89C-06 5 172421790 172421790 C T ATP6V0E1 Silent p.T39T 0.19 TCGA-YD-A89C-06 5 17353944 17353944 G A CTD-2139B15.2 5'Flank 0.24 TCGA-YD-A89C-06 5 176305289 176305289 G A UNC5A Silent p.Q638Q 0.33 TCGA-YD-A89C-06 5 176308496 176308496 C T HK3 Missense_Mutation p.D812N 0.48 tolerated(0.37) benign(0.029) TCGA-YD-A89C-06 5 176516672 176516672 G A FGFR4 Silent p.E23E 0.57 TCGA-YD-A89C-06 5 177548280 177548280 C T N4BP3 Missense_Mutation p.P345L 0.50 tolerated(0.2) benign(0.014) TCGA-YD-A89C-06 5 179134154 179134154 G A CANX Silent p.K89K 0.33 TCGA-YD-A89C-06 5 179201338 179201338 C T MAML1 Silent p.S837S 0.24 TCGA-YD-A89C-06 5 180048602 180048602 C T FLT4 Missense_Mutation p.E654K 0.48 tolerated(0.33) possibly_damaging(0.881) TCGA-YD-A89C-06 5 180166921 180166921 G A OR2Y1 Silent p.I46I 0.40 TCGA-YD-A89C-06 5 180219653 180219653 G A MGAT1 Missense_Mutation p.P107S 0.38 probably_damaging(0.996) TCGA-YD-A89C-06 5 180582613 180582613 G A OR2V2 Missense_Mutation p.G224E 0.39 tolerated(0.29) benign(0.371) TCGA-YD-A89C-06 5 22078746 22078746 G A CDH12 Silent p.L14L 0.28 TCGA-YD-A89C-06 5 23527398 23527398 A G PRDM9 Missense_Mutation p.H734R 0.39 tolerated(0.28) possibly_damaging(0.536) TCGA-YD-A89C-06 5 24487920 24487920 C T CDH10 Missense_Mutation p.G740E 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 5 31294176 31294176 C T CDH6 Silent p.A112A 0.30 TCGA-YD-A89C-06 5 31323161 31323161 C T CDH6 Missense_Mutation p.R707C 0.20 tolerated(0.05) possibly_damaging(0.873) TCGA-YD-A89C-06 5 33938003 33938003 C T RXFP3 Silent p.P386P 0.21 TCGA-YD-A89C-06 5 35697844 35697844 G A SPEF2 Missense_Mutation p.G697E 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 5 35771754 35771754 A C SPEF2 Missense_Mutation p.E1282A 0.41 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 5 35779280 35779280 G A SPEF2 Missense_Mutation p.E1427K 0.37 deleterious(0.03) benign(0.257) TCGA-YD-A89C-06 5 35856999 35856999 C T IL7R 5'UTR 0.48 TCGA-YD-A89C-06 5 35957460 35957460 G A UGT3A1 Missense_Mutation p.S302F 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-YD-A89C-06 5 37179510 37179510 G A C5orf42 Missense_Mutation p.P1925S 0.33 tolerated(0.42) benign(0.023) TCGA-YD-A89C-06 5 37443452 37443452 C T WDR70 Nonsense_Mutation p.R222* 0.41 TCGA-YD-A89C-06 5 38337677 38337677 C T EGFLAM Silent p.F51F 0.32 TCGA-YD-A89C-06 5 38921749 38921749 G A OSMR Missense_Mutation p.E540K 0.43 tolerated(0.62) benign(0.034) TCGA-YD-A89C-06 5 39202830 39202830 G T FYB Missense_Mutation p.P88H 0.38 deleterious(0.02) benign(0.232) TCGA-YD-A89C-06 5 40762781 40762781 C T PRKAA1 3'Flank 0.41 TCGA-YD-A89C-06 5 40852286 40852286 G A CARD6 Silent p.K284K 0.31 TCGA-YD-A89C-06 5 41510549 41510549 G A PLCXD3 Missense_Mutation p.P27L 0.21 deleterious(0) probably_damaging(0.973) TCGA-YD-A89C-06 5 42719152 42719152 G A GHR Missense_Mutation p.D515N 0.37 tolerated(0.38) possibly_damaging(0.759) TCGA-YD-A89C-06 5 42800684 42800684 G A SEPP1 3'UTR 0.31 TCGA-YD-A89C-06 5 44815413 44815413 A G MRPS30 3'UTR 0.47 TCGA-YD-A89C-06 5 5190105 5190105 C T ADAMTS16 Missense_Mutation p.H357Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 5 54527152 54527152 G A CCNO 3'UTR 0.44 TCGA-YD-A89C-06 5 61779892 61779892 T G IPO11 Nonsense_Mutation p.Y399* 0.47 TCGA-YD-A89C-06 5 64096124 64096124 C T CWC27 Missense_Mutation p.P240L 0.37 deleterious(0) probably_damaging(0.98) TCGA-YD-A89C-06 5 66445286 66445286 C T MAST4 Missense_Mutation p.S1055F 0.53 benign(0.031) TCGA-YD-A89C-06 5 6668392 6668392 C T SRD5A1 3'UTR 0.37 TCGA-YD-A89C-06 5 74654520 74654520 C T HMGCR Silent p.F675F 0.37 TCGA-YD-A89C-06 5 77714666 77714666 T A SCAMP1 Missense_Mutation p.F137L 0.32 deleterious(0.03) benign(0.328) TCGA-YD-A89C-06 5 79029719 79029719 G A CMYA5 Missense_Mutation p.E1711K 0.43 benign(0.026) TCGA-YD-A89C-06 5 79033490 79033490 G A CMYA5 Missense_Mutation p.E2968K 0.39 possibly_damaging(0.791) TCGA-YD-A89C-06 5 89793487 89793487 C T POLR3G Missense_Mutation p.P107S 0.44 deleterious(0) probably_damaging(0.982) TCGA-YD-A89C-06 5 89939683 89939683 G A GPR98 Missense_Mutation p.A873T 0.16 possibly_damaging(0.811) TCGA-YD-A89C-06 5 9119196 9119196 G A SEMA5A Silent p.I613I 0.39 TCGA-YD-A89C-06 5 93856010 93856010 G A KIAA0825 Missense_Mutation p.R305C 0.40 tolerated(0.2) possibly_damaging(0.799) TCGA-YD-A89C-06 5 94014541 94014541 T C ANKRD32 Missense_Mutation p.L619S 0.31 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 5 96235827 96235827 T C ERAP2 Silent p.S502S 0.39 TCGA-YD-A89C-06 5 96244735 96244735 G A ERAP2 Missense_Mutation p.A695T 0.36 deleterious(0.03) possibly_damaging(0.461) TCGA-YD-A89C-06 6 105225180 105225180 G A HACE1 Missense_Mutation p.R527C 0.30 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 6 105405989 105405989 G A LIN28B Missense_Mutation p.G9D 0.35 deleterious(0.01) unknown(0) TCGA-YD-A89C-06 6 105474224 105474224 G A LIN28B Missense_Mutation p.E84K 0.35 tolerated(0.06) possibly_damaging(0.608) TCGA-YD-A89C-06 6 106969140 106969140 G A AIM1 Missense_Mutation p.E945K 0.42 tolerated(0.06) possibly_damaging(0.906) TCGA-YD-A89C-06 6 10875048 10875048 G A GCM2 Missense_Mutation p.S234F 0.09 deleterious(0.01) possibly_damaging(0.629) TCGA-YD-A89C-06 6 109175511 109175511 C T ARMC2 Missense_Mutation p.P14L 0.25 deleterious(0.02) benign(0.307) TCGA-YD-A89C-06 6 109871592 109871592 A G AK9 Intron 0.42 TCGA-YD-A89C-06 6 112671172 112671172 G A RFPL4B Missense_Mutation p.E88K 0.35 tolerated(0.78) benign(0.001) TCGA-YD-A89C-06 6 114378726 114378726 G A HS3ST5 Missense_Mutation p.P246S 0.38 tolerated(0.11) benign(0.299) TCGA-YD-A89C-06 6 117127594 117127594 G A GPRC6A Missense_Mutation p.A425V 0.38 deleterious(0) possibly_damaging(0.858) TCGA-YD-A89C-06 6 117647494 117647494 C T ROS1 Nonsense_Mutation p.W1817* 0.31 TCGA-YD-A89C-06 6 118475698 118475698 C T SLC35F1 Silent p.F88F 0.32 TCGA-YD-A89C-06 6 121768024 121768024 C T GJA1 Missense_Mutation p.L11F 0.39 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 123319118 123319118 T A CLVS2 Missense_Mutation p.F66I 0.37 tolerated(0.2) benign(0.026) TCGA-YD-A89C-06 6 130392175 130392175 A G L3MBTL3 Missense_Mutation p.K383E 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-YD-A89C-06 6 130761939 130761939 G A TMEM200A Silent p.K124K 0.34 TCGA-YD-A89C-06 6 130762167 130762167 C T TMEM200A Silent p.S200S 0.37 TCGA-YD-A89C-06 6 132029781 132029781 C T CTAGE9 3'UTR 0.35 TCGA-YD-A89C-06 6 132030942 132030942 C T CTAGE9 Missense_Mutation p.E406K 0.19 deleterious(0.01) probably_damaging(0.959) TCGA-YD-A89C-06 6 132636874 132636874 G A MOXD1 Missense_Mutation p.L470F 0.42 tolerated(0.15) probably_damaging(0.995) TCGA-YD-A89C-06 6 132891697 132891697 C T TAAR6 Silent p.F79F 0.39 TCGA-YD-A89C-06 6 133827288 133827288 G A EYA4 Missense_Mutation p.M412I 0.27 deleterious(0.02) benign(0.246) TCGA-YD-A89C-06 6 134349786 134349786 C T SLC2A12 Missense_Mutation p.G393R 0.40 tolerated(0.49) benign(0.005) TCGA-YD-A89C-06 6 134349859 134349859 G A SLC2A12 Silent p.I368I 0.37 TCGA-YD-A89C-06 6 136589344 136589344 C T BCLAF1 Missense_Mutation p.E785K 0.08 deleterious(0.01) benign(0.025) TCGA-YD-A89C-06 6 142399786 142399786 G A NMBR Missense_Mutation p.A226V 0.38 tolerated(0.63) benign(0.002) TCGA-YD-A89C-06 6 144262947 144262947 G A PLAGL1 Silent p.L336L 0.42 TCGA-YD-A89C-06 6 149953970 149953970 G A KATNA1 Missense_Mutation p.P82L 0.25 deleterious(0.01) benign(0.221) TCGA-YD-A89C-06 6 151055137 151055137 C A PLEKHG1 Missense_Mutation p.T107K 0.40 tolerated(0.13) benign(0.124) TCGA-YD-A89C-06 6 152265305 152265305 C T ESR1 Intron 0.47 TCGA-YD-A89C-06 6 152536195 152536195 C A SYNE1 Nonsense_Mutation p.G7398* 0.40 TCGA-YD-A89C-06 6 152737969 152737969 G A SYNE1 Missense_Mutation p.S1868F 0.43 benign(0.061) TCGA-YD-A89C-06 6 154412133 154412133 G A OPRM1 Nonsense_Mutation p.W323* 0.33 TCGA-YD-A89C-06 6 155596837 155596837 G A CLDN20 5'UTR 0.40 TCGA-YD-A89C-06 6 158049496 158049496 C T ZDHHC14 Silent p.F227F 0.35 TCGA-YD-A89C-06 6 158485782 158485782 G A SYNJ2 Silent p.K453K 0.38 TCGA-YD-A89C-06 6 161012065 161012065 G A LPA Missense_Mutation p.P1233L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A89C-06 6 161174065 161174065 G A PLG Nonsense_Mutation p.W802* 0.23 TCGA-YD-A89C-06 6 21108681 21108681 C T CDKAL1 Missense_Mutation p.P429L 0.42 deleterious(0) benign(0.078) TCGA-YD-A89C-06 6 24415305 24415305 C T MRS2 Silent p.I211I 0.33 TCGA-YD-A89C-06 6 25682214 25682214 G A SCGN Silent p.L169L 0.53 TCGA-YD-A89C-06 6 25921449 25921449 C T SLC17A2 Silent p.V144V 0.22 TCGA-YD-A89C-06 6 25926045 25926045 T A SLC17A2 5'UTR 0.24 TCGA-YD-A89C-06 6 25926068 25926068 C T SLC17A2 5'UTR 0.27 TCGA-YD-A89C-06 6 26468112 26468112 C T BTN2A1 Intron 0.28 TCGA-YD-A89C-06 6 28547186 28547186 C T SCAND3 Missense_Mutation p.G144D 0.33 tolerated_low_confidence(0.22) benign(0.001) TCGA-YD-A89C-06 6 2890462 2890462 G A SERPINB9 Missense_Mutation p.L356F 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 2890463 2890463 G A SERPINB9 Silent p.F355F 0.33 TCGA-YD-A89C-06 6 2890732 2890732 C T SERPINB9 Missense_Mutation p.E266K 0.15 tolerated(0.15) benign(0.158) TCGA-YD-A89C-06 6 29641146 29641146 G A ZFP57 Missense_Mutation p.R248C 0.39 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 30653290 30653290 G A PPP1R18 Missense_Mutation p.A169V 0.32 deleterious_low_confidence(0.01) benign(0.086) TCGA-YD-A89C-06 6 30680308 30680308 G A MDC1 Missense_Mutation p.L471F 0.27 tolerated(0.07) benign(0.133) TCGA-YD-A89C-06 6 3083321 3083321 C T RIPK1 Silent p.I154I 0.13 TCGA-YD-A89C-06 6 31239079 31239079 G A HLA-C Silent p.D130D 0.16 TCGA-YD-A89C-06 6 31323338 31323338 G A HLA-B Silent p.P217P 0.25 TCGA-YD-A89C-06 6 31583916 31583916 G A AIF1 Missense_Mutation p.D64N 0.32 tolerated(0.06) benign(0.049) TCGA-YD-A89C-06 6 31625215 31625216 - A APOM Frame_Shift_Ins p.N135Kfs*2 0.31 TCGA-YD-A89C-06 6 31748826 31748826 G A VARS Silent p.P873P 0.31 TCGA-YD-A89C-06 6 31914953 31914953 G A CFB Silent p.A658A 0.24 TCGA-YD-A89C-06 6 31976142 31976142 G A AL645922.1 5'Flank 0.64 TCGA-YD-A89C-06 6 32026097 32026097 C T TNXB Silent p.E2521E 0.35 TCGA-YD-A89C-06 6 32026136 32026136 G A TNXB Silent p.S2508S 0.28 TCGA-YD-A89C-06 6 32037965 32037965 G A TNXB Silent p.F1739F 0.44 TCGA-YD-A89C-06 6 32940697 32940697 C T BRD2 Missense_Mutation p.H8Y 0.29 tolerated_low_confidence(0.18) benign(0) TCGA-YD-A89C-06 6 33281858 33281858 C T TAPBP 5'UTR 0.27 TCGA-YD-A89C-06 6 33281859 33281859 C T TAPBP 5'UTR 0.27 TCGA-YD-A89C-06 6 33368206 33368206 C T KIFC1 Intron 0.21 TCGA-YD-A89C-06 6 33646550 33646550 C T ITPR3 Silent p.F1302F 0.29 TCGA-YD-A89C-06 6 35477638 35477638 C T TULP1 Silent p.G189G 0.41 TCGA-YD-A89C-06 6 36269779 36269779 G A PNPLA1 Missense_Mutation p.G306E 0.23 tolerated(1) benign(0.001) TCGA-YD-A89C-06 6 36982774 36982774 C T FGD2 Missense_Mutation p.S330F 0.59 deleterious(0) possibly_damaging(0.78) TCGA-YD-A89C-06 6 38757653 38757653 G A DNAH8 Missense_Mutation p.M669I 0.43 benign(0) TCGA-YD-A89C-06 6 38802388 38802388 G A DNAH8 Missense_Mutation p.E1229K 0.45 probably_damaging(0.947) TCGA-YD-A89C-06 6 38816480 38816480 C T DNAH8 Missense_Mutation p.S1484F 0.11 probably_damaging(0.974) TCGA-YD-A89C-06 6 4069282 4069282 G A FAM217A Missense_Mutation p.P392L 0.11 deleterious(0.02) benign(0.007) TCGA-YD-A89C-06 6 407679 407679 C T IRF4 3'UTR 0.11 TCGA-YD-A89C-06 6 41248704 41248704 G A TREM1 Silent p.I198I 0.31 TCGA-YD-A89C-06 6 41653831 41653831 G A TFEB Silent p.I316I 0.47 TCGA-YD-A89C-06 6 43153975 43153975 C T CUL9 Missense_Mutation p.P345S 0.34 tolerated(0.37) benign(0.05) TCGA-YD-A89C-06 6 43227352 43227352 C T TTBK1 Silent p.T444T 0.36 TCGA-YD-A89C-06 6 44197683 44197683 C T SLC29A1 Silent p.A118A 0.29 TCGA-YD-A89C-06 6 45870960 45870960 G A CLIC5 Silent p.I366I 0.36 TCGA-YD-A89C-06 6 46111325 46111325 C T ENPP4 Missense_Mutation p.P437L 0.39 tolerated(0.06) benign(0.097) TCGA-YD-A89C-06 6 46677074 46677074 G A PLA2G7 Nonsense_Mutation p.Q287* 0.28 TCGA-YD-A89C-06 6 46682233 46682233 G A PLA2G7 Missense_Mutation p.P145L 0.29 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 46761441 46761441 G A MEP1A Missense_Mutation p.E45K 0.38 deleterious(0.05) benign(0.009) TCGA-YD-A89C-06 6 47682103 47682103 G A GPR115 Silent p.V374V 0.41 TCGA-YD-A89C-06 6 47682244 47682244 C T GPR115 Silent p.I421I 0.39 TCGA-YD-A89C-06 6 47847331 47847331 G A PTCHD4 Missense_Mutation p.R417C 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-YD-A89C-06 6 49456174 49456174 G A CENPQ Missense_Mutation p.R196K 0.40 tolerated(1) benign(0.001) TCGA-YD-A89C-06 6 49585885 49585885 C T RHAG Missense_Mutation p.G130R 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 49696553 49696553 C T CRISP3 Missense_Mutation p.E233K 0.38 tolerated(0.14) benign(0.087) TCGA-YD-A89C-06 6 52957561 52957561 C T FBXO9 Missense_Mutation p.R278C 0.28 deleterious(0) probably_damaging(0.953) TCGA-YD-A89C-06 6 53519956 53519956 C T KLHL31 Missense_Mutation p.G39R 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-YD-A89C-06 6 54208139 54208139 C T TINAG Missense_Mutation p.S247F 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 6 54219391 54219391 G A TINAG Missense_Mutation p.E403K 0.34 tolerated(0.15) benign(0.016) TCGA-YD-A89C-06 6 55039366 55039366 G A HCRTR2 5'UTR 0.49 TCGA-YD-A89C-06 6 55039435 55039435 C T HCRTR2 Missense_Mutation p.S17F 0.31 deleterious(0.04) benign(0.034) TCGA-YD-A89C-06 6 55196641 55196641 G A GFRAL Missense_Mutation p.D51N 0.23 deleterious(0.01) benign(0.14) TCGA-YD-A89C-06 6 55739381 55739381 C T BMP5 Missense_Mutation p.E95K 0.29 tolerated(0.13) benign(0.155) TCGA-YD-A89C-06 6 55932118 55932118 C T COL21A1 Missense_Mutation p.G701E 0.33 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 6 55933851 55933851 C T COL21A1 Missense_Mutation p.G695E 0.54 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 6 56044618 56044618 C T COL21A1 Missense_Mutation p.R133Q 0.52 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 6 6266843 6266843 G A F13A1 Silent p.T173T 0.23 TCGA-YD-A89C-06 6 66115174 66115174 T G EYS Missense_Mutation p.T317P 0.38 tolerated(0.07) benign(0.063) TCGA-YD-A89C-06 6 66204681 66204681 C T EYS Missense_Mutation p.G208E 0.37 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 6 70411355 70411355 G A LMBRD1 Missense_Mutation p.L355F 0.43 deleterious(0.02) possibly_damaging(0.901) TCGA-YD-A89C-06 6 70669921 70669921 C T COL19A1 Missense_Mutation p.P324S 0.33 deleterious(0.03) unknown(0) TCGA-YD-A89C-06 6 70944598 70944598 G A COL9A1 Missense_Mutation p.R720W 0.31 probably_damaging(0.996) TCGA-YD-A89C-06 6 71004152 71004152 C T COL9A1 Silent p.G138G 0.33 TCGA-YD-A89C-06 6 7229776 7229776 C T RREB1 Missense_Mutation p.P482S 0.80 tolerated(0.12) possibly_damaging(0.486) TCGA-YD-A89C-06 6 7231438 7231438 C T RREB1 Silent p.L1036L 0.13 TCGA-YD-A89C-06 6 72960920 72960920 C T RIMS1 Silent p.I849I 0.44 TCGA-YD-A89C-06 6 73751711 73751711 C T KCNQ5 Missense_Mutation p.S181F 0.38 deleterious(0) probably_damaging(0.997) TCGA-YD-A89C-06 6 74104715 74104715 G A DDX43 Silent p.R29R 0.35 TCGA-YD-A89C-06 6 75823424 75823424 C T COL12A1 Silent p.T2578T 0.36 TCGA-YD-A89C-06 6 76540229 76540229 C T MYO6 Missense_Mutation p.L120F 0.35 deleterious(0) unknown(0) TCGA-YD-A89C-06 6 80737613 80737613 C T TTK Missense_Mutation p.P469L 0.55 deleterious(0) probably_damaging(0.95) TCGA-YD-A89C-06 6 83075789 83075789 C T TPBG Missense_Mutation p.L371F 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 6 83869666 83869666 C T DOPEY1 Missense_Mutation p.P2317S 0.29 deleterious(0.03) possibly_damaging(0.841) TCGA-YD-A89C-06 6 84627784 84627784 G A CYB5R4 Missense_Mutation p.S169N 0.32 tolerated(0.14) benign(0.021) TCGA-YD-A89C-06 6 89638749 89638749 G A RNGTT Missense_Mutation p.R108C 0.47 deleterious(0.02) possibly_damaging(0.826) TCGA-YD-A89C-06 6 97578632 97578632 G A KLHL32 Splice_Site p.X472_splice 0.36 TCGA-YD-A89C-06 7 100320681 100320681 C T EPO Silent p.F169F 0.33 TCGA-YD-A89C-06 7 100334438 100334438 G A ZAN Missense_Mutation p.S87N 0.36 benign(0.013) TCGA-YD-A89C-06 7 100551803 100551803 C T MUC3A Missense_Mutation p.P185L 0.17 deleterious(0.04) benign(0.134) TCGA-YD-A89C-06 7 100677009 100677009 C T MUC17 Missense_Mutation p.P771L 0.26 unknown(0) TCGA-YD-A89C-06 7 101944382 101944382 G A SH2B2 Missense_Mutation p.R226Q 0.47 deleterious(0.01) possibly_damaging(0.753) TCGA-YD-A89C-06 7 102944939 102944939 T C PMPCB Splice_Site p.X246_splice 0.53 TCGA-YD-A89C-06 7 103130269 103130269 C T RELN Missense_Mutation p.G3228E 0.25 deleterious(0) benign(0.008) TCGA-YD-A89C-06 7 103185765 103185765 C A RELN Missense_Mutation p.G2110V 0.49 deleterious(0) possibly_damaging(0.832) TCGA-YD-A89C-06 7 103202009 103202009 G A RELN Silent p.I1833I 0.44 TCGA-YD-A89C-06 7 103290811 103290811 G A RELN Missense_Mutation p.P638S 0.59 tolerated(0.14) probably_damaging(0.998) TCGA-YD-A89C-06 7 106786832 106786832 G A PRKAR2B Missense_Mutation p.E223K 0.58 deleterious(0) probably_damaging(0.991) TCGA-YD-A89C-06 7 113519973 113519973 C T PPP1R3A Missense_Mutation p.E392K 0.25 tolerated(0.54) benign(0.006) TCGA-YD-A89C-06 7 113558310 113558310 G A PPP1R3A Missense_Mutation p.P248S 0.49 tolerated(0.57) benign(0.02) TCGA-YD-A89C-06 7 117067531 117067531 C T ASZ1 5'UTR 0.29 TCGA-YD-A89C-06 7 120907321 120907321 C T CPED1 Missense_Mutation p.H896Y 0.49 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 7 121679609 121679609 G A PTPRZ1 Silent p.R1868R 0.25 TCGA-YD-A89C-06 7 121944194 121944194 G A FEZF1 Silent p.L100L 0.40 TCGA-YD-A89C-06 7 122091506 122091506 G A CADPS2 Missense_Mutation p.S737L 0.40 tolerated(0.27) benign(0.001) TCGA-YD-A89C-06 7 122342322 122342322 C T RNF148 Missense_Mutation p.M161I 0.25 tolerated(0.06) benign(0.055) TCGA-YD-A89C-06 7 123256328 123256328 G A ASB15 Splice_Site p.X54_splice 0.29 TCGA-YD-A89C-06 7 126746724 126746724 C T GRM8 Missense_Mutation p.D185N 0.53 tolerated(0.06) probably_damaging(0.997) TCGA-YD-A89C-06 7 1275477 1275477 C T UNCX Nonsense_Mutation p.Q154* 0.21 TCGA-YD-A89C-06 7 127732246 127732246 C T SND1 3'UTR 0.33 TCGA-YD-A89C-06 7 129929594 129929594 G A CPA2 3'UTR 0.58 TCGA-YD-A89C-06 7 131878908 131878908 G A PLXNA4 Silent p.P923P 0.29 TCGA-YD-A89C-06 7 132169588 132169588 C T PLXNA4 Intron 0.32 TCGA-YD-A89C-06 7 137761176 137761176 C T AKR1D1 5'Flank 0.50 TCGA-YD-A89C-06 7 139661800 139661800 G A TBXAS1 Missense_Mutation p.R348K 0.24 tolerated(0.5) benign(0.005) TCGA-YD-A89C-06 7 141736623 141736623 G A MGAM Missense_Mutation p.D693N 0.30 tolerated(0.12) benign(0.147) TCGA-YD-A89C-06 7 141763342 141763342 C T MGAM Missense_Mutation p.P1434L 0.14 tolerated(0.35) benign(0.029) TCGA-YD-A89C-06 7 141896610 141896610 G A RP11-1220K2.2 Silent p.G1542G 0.27 TCGA-YD-A89C-06 7 142612549 142612549 G A TRPV5 Missense_Mutation p.P405L 0.25 tolerated(0.06) possibly_damaging(0.558) TCGA-YD-A89C-06 7 142612696 142612696 C T TRPV5 Missense_Mutation p.E389K 0.46 deleterious(0) probably_damaging(0.996) TCGA-YD-A89C-06 7 142640921 142640921 G A KEL Missense_Mutation p.S514F 0.17 tolerated(0.61) possibly_damaging(0.707) TCGA-YD-A89C-06 7 142640925 142640925 G A KEL Missense_Mutation p.R513W 0.16 deleterious(0) possibly_damaging(0.886) TCGA-YD-A89C-06 7 143028356 143028356 C T CLCN1 Silent p.F337F 0.50 TCGA-YD-A89C-06 7 143080003 143080003 C T ZYX Missense_Mutation p.S204F 0.54 deleterious(0.05) possibly_damaging(0.866) TCGA-YD-A89C-06 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.27 TCGA-YD-A89C-06 7 143701745 143701745 G A OR6B1 Missense_Mutation p.G219E 0.55 tolerated(0.14) benign(0.295) TCGA-YD-A89C-06 7 14378223 14378223 C T DGKB Missense_Mutation p.R681Q 0.46 deleterious(0.04) probably_damaging(0.984) TCGA-YD-A89C-06 7 143807063 143807063 C T OR2A2 Nonsense_Mutation p.Q130* 0.44 TCGA-YD-A89C-06 7 144060348 144060348 A C ARHGEF5 Missense_Mutation p.N196H 0.22 tolerated(0.48) benign(0.002) TCGA-YD-A89C-06 7 144098567 144098567 C T NOBOX Missense_Mutation p.G139E 0.24 deleterious(0) benign(0.261) TCGA-YD-A89C-06 7 14622711 14622711 T A DGKB Silent p.G496G 0.59 TCGA-YD-A89C-06 7 146818197 146818197 G A CNTNAP2 Missense_Mutation p.R294K 0.15 tolerated(1) benign(0.028) TCGA-YD-A89C-06 7 146818198 146818198 G A CNTNAP2 Silent p.R294R 0.15 TCGA-YD-A89C-06 7 146829469 146829469 C T CNTNAP2 Missense_Mutation p.P406S 0.21 tolerated(0.17) benign(0.115) TCGA-YD-A89C-06 7 148768677 148768677 G A ZNF786 Missense_Mutation p.P396L 0.40 deleterious(0) possibly_damaging(0.688) TCGA-YD-A89C-06 7 148802017 148802017 C T ZNF425 Missense_Mutation p.E316K 0.24 tolerated(1) benign(0.006) TCGA-YD-A89C-06 7 149473463 149473463 C T ZNF467 5'Flank 0.26 TCGA-YD-A89C-06 7 149545483 149545483 A G ZNF862 Missense_Mutation p.N301D 0.27 tolerated_low_confidence(0.17) benign(0.001) TCGA-YD-A89C-06 7 150389963 150389963 G A GIMAP2 Missense_Mutation p.E197K 0.25 tolerated(0.09) possibly_damaging(0.807) TCGA-YD-A89C-06 7 150440133 150440133 C T GIMAP5 Silent p.F302F 0.51 TCGA-YD-A89C-06 7 150500905 150500905 C T TMEM176A Silent p.F180F 0.55 TCGA-YD-A89C-06 7 150656774 150656774 C T KCNH2 Missense_Mutation p.G120R 0.27 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 7 154237627 154237627 C T DPP6 Silent p.F156F 0.11 TCGA-YD-A89C-06 7 20180774 20180774 C T MACC1 Nonsense_Mutation p.W785* 0.24 TCGA-YD-A89C-06 7 20406640 20406640 C T ITGB8 Silent p.F73F 0.52 TCGA-YD-A89C-06 7 20762717 20762717 G A ABCB5 Missense_Mutation p.G834R 0.56 deleterious(0.02) probably_damaging(0.995) TCGA-YD-A89C-06 7 21727067 21727067 G A DNAH11 Missense_Mutation p.R1956Q 0.59 possibly_damaging(0.905) TCGA-YD-A89C-06 7 21742385 21742385 C T DNAH11 Silent p.L2087L 0.16 TCGA-YD-A89C-06 7 21908546 21908546 G A DNAH11 Silent p.Q3975Q 0.26 TCGA-YD-A89C-06 7 22186551 22186551 C T RAPGEF5 Missense_Mutation p.M504I 0.27 deleterious(0) benign(0.257) TCGA-YD-A89C-06 7 24690331 24690331 G A MPP6 Silent p.Q217Q 0.55 TCGA-YD-A89C-06 7 27169051 27169051 G A HOXA4 Silent p.L252L 0.57 TCGA-YD-A89C-06 7 31682304 31682304 C T CCDC129 Silent p.S466S 0.24 TCGA-YD-A89C-06 7 31855733 31855733 G A PDE1C Missense_Mutation p.R600C 0.51 deleterious(0) benign(0.394) TCGA-YD-A89C-06 7 39379545 39379545 C T POU6F2 Silent p.P272P 0.17 TCGA-YD-A89C-06 7 40027214 40027214 C T CDK13 Nonsense_Mutation p.R410* 0.52 TCGA-YD-A89C-06 7 4089020 4089020 G A SDK1 Silent p.V881V 0.46 TCGA-YD-A89C-06 7 42017192 42017192 G A GLI3 Missense_Mutation p.R593C 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 7 42187826 42187826 G A GLI3 Silent p.Y122Y 0.26 TCGA-YD-A89C-06 7 43508632 43508632 C T HECW1 Silent p.F1009F 0.26 TCGA-YD-A89C-06 7 44260309 44260309 C T CAMK2B Silent p.A558A 0.29 TCGA-YD-A89C-06 7 44552986 44552986 G A NPC1L1 3'UTR 0.62 TCGA-YD-A89C-06 7 45650016 45650016 C A ADCY1 Silent p.A276A 0.48 TCGA-YD-A89C-06 7 51096157 51096157 G A COBL Missense_Mutation p.P879L 0.30 tolerated(0.39) benign(0.001) TCGA-YD-A89C-06 7 5253916 5253916 G A WIPI2 Intron 0.29 TCGA-YD-A89C-06 7 5253917 5253917 G A WIPI2 Intron 0.29 TCGA-YD-A89C-06 7 62752733 62752733 C A ZNF733P RNA 0.39 TCGA-YD-A89C-06 7 63726711 63726711 C T ZNF679 Missense_Mutation p.H234Y 0.54 tolerated(0.05) benign(0.427) TCGA-YD-A89C-06 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.50 deleterious(0) possibly_damaging(0.869) TCGA-YD-A89C-06 7 64639848 64639848 G A INTS4L1 RNA 0.32 TCGA-YD-A89C-06 7 72988299 72988299 C T TBL2 Missense_Mutation p.A139T 0.54 deleterious(0) probably_damaging(0.963) TCGA-YD-A89C-06 7 73280192 73280192 C T WBSCR28 Missense_Mutation p.P263S 0.60 deleterious(0.04) probably_damaging(0.932) TCGA-YD-A89C-06 7 75168691 75168691 G A HIP1 Missense_Mutation p.R1005W 0.24 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 7 76069798 76069798 C T ZP3 Silent p.F310F 0.38 TCGA-YD-A89C-06 7 77824372 77824372 G A MAGI2 Silent p.D696D 0.31 TCGA-YD-A89C-06 7 81593660 81593660 C T CACNA2D1 Missense_Mutation p.G864R 0.23 deleterious(0) probably_damaging(0.993) TCGA-YD-A89C-06 7 83032082 83032082 G A SEMA3E Nonsense_Mutation p.R337* 0.63 TCGA-YD-A89C-06 7 86416077 86416077 G A GRM3 Silent p.L323L 0.60 TCGA-YD-A89C-06 7 87160758 87160758 C T ABCB1 Missense_Mutation p.G846E 0.59 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 7 87323249 87323249 G A RUNDC3B Silent p.L88L 0.57 TCGA-YD-A89C-06 7 87407231 87407231 G A RUNDC3B Missense_Mutation p.E323K 0.26 tolerated(0.27) benign(0.004) TCGA-YD-A89C-06 7 88962813 88962813 C T ZNF804B Missense_Mutation p.L173F 0.56 tolerated(0.63) possibly_damaging(0.793) TCGA-YD-A89C-06 7 89929305 89929305 T C C7orf63 Missense_Mutation p.L661S 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 7 92883216 92883216 G A CCDC132 Missense_Mutation p.R90K 0.60 tolerated(0.27) possibly_damaging(0.729) TCGA-YD-A89C-06 7 98522789 98522789 C T TRRAP Missense_Mutation p.R960W 0.44 benign(0.306) TCGA-YD-A89C-06 7 98550906 98550906 C T TRRAP Silent p.N1853N 0.44 TCGA-YD-A89C-06 7 99305544 99305544 C T CYP3A7 Missense_Mutation p.G436E 0.55 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 7 99445797 99445797 C T CYP3A43 Silent p.P147P 0.17 TCGA-YD-A89C-06 8 101195603 101195603 G A SPAG1 Missense_Mutation p.E143K 0.31 tolerated(0.41) benign(0) TCGA-YD-A89C-06 8 10285828 10285828 C T MSRA 3'UTR 0.24 TCGA-YD-A89C-06 8 103573200 103573200 C T ODF1 3'UTR 0.23 TCGA-YD-A89C-06 8 10465367 10465367 C T RP1L1 Missense_Mutation p.E2081K 0.31 unknown(0) TCGA-YD-A89C-06 8 104778599 104778599 G A RIMS2 Missense_Mutation p.E178K 0.25 deleterious_low_confidence(0.04) benign(0.022) TCGA-YD-A89C-06 8 104831701 104831701 G A RIMS2 Intron 0.33 TCGA-YD-A89C-06 8 106814114 106814114 A G ZFPM2 Missense_Mutation p.T602A 0.37 tolerated(0.39) benign(0.001) TCGA-YD-A89C-06 8 106814652 106814652 G A ZFPM2 Missense_Mutation p.G781E 0.26 deleterious(0.02) benign(0.168) TCGA-YD-A89C-06 8 10755924 10755924 G A XKR6 Silent p.I488I 0.55 TCGA-YD-A89C-06 8 107782327 107782327 C T ABRA Missense_Mutation p.R31Q 0.30 tolerated(0.14) benign(0.073) TCGA-YD-A89C-06 8 108264104 108264104 C T ANGPT1 Missense_Mutation p.M492I 0.45 deleterious(0) probably_damaging(0.995) TCGA-YD-A89C-06 8 109498818 109498818 C T EMC2 Silent p.T295T 0.25 TCGA-YD-A89C-06 8 109797129 109797129 G A TMEM74 Missense_Mutation p.P67S 0.42 deleterious(0.04) possibly_damaging(0.462) TCGA-YD-A89C-06 8 110401345 110401345 G A PKHD1L1 Missense_Mutation p.G221S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-YD-A89C-06 8 110457695 110457695 G A PKHD1L1 Missense_Mutation p.G1866E 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-YD-A89C-06 8 110457696 110457696 G A PKHD1L1 Silent p.G1866G 0.30 TCGA-YD-A89C-06 8 110457791 110457791 T - PKHD1L1 Frame_Shift_Del p.N1899Ifs*50 0.31 TCGA-YD-A89C-06 8 110465002 110465002 G A PKHD1L1 Missense_Mutation p.G2188E 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 8 110466461 110466461 G A PKHD1L1 Missense_Mutation p.G2244R 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 8 110510707 110510707 G A PKHD1L1 Missense_Mutation p.G3539E 0.33 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 8 110984880 110984880 G A KCNV1 Silent p.L200L 0.38 TCGA-YD-A89C-06 8 113317119 113317119 G A CSMD3 Silent p.S2699S 0.21 TCGA-YD-A89C-06 8 113702187 113702187 C T CSMD3 Missense_Mutation p.E689K 0.31 deleterious(0.02) possibly_damaging(0.576) TCGA-YD-A89C-06 8 113988106 113988106 C T CSMD3 Silent p.Q434Q 0.34 TCGA-YD-A89C-06 8 116599294 116599294 G A TRPS1 Silent p.A878A 0.31 TCGA-YD-A89C-06 8 118543034 118543034 G T MED30 Nonsense_Mutation p.E137* 0.14 TCGA-YD-A89C-06 8 121220600 121220600 C T COL14A1 Missense_Mutation p.L441F 0.44 tolerated(0.05) benign(0.003) TCGA-YD-A89C-06 8 124219704 124219704 C T FAM83A Missense_Mutation p.P361S 0.67 tolerated(0.3) benign(0.026) TCGA-YD-A89C-06 8 124724961 124724961 C T ANXA13 Silent p.V57V 0.34 TCGA-YD-A89C-06 8 125035830 125035830 C T FER1L6 Silent p.F760F 0.38 TCGA-YD-A89C-06 8 125551344 125551344 C T TATDN1 5'Flank 0.40 TCGA-YD-A89C-06 8 125551345 125551345 C T TATDN1 5'Flank 0.42 TCGA-YD-A89C-06 8 131833647 131833647 C T ADCY8 Missense_Mutation p.E899K 0.18 tolerated(0.78) possibly_damaging(0.874) TCGA-YD-A89C-06 8 131896968 131896968 G A ADCY8 Missense_Mutation p.P651S 0.34 deleterious(0.04) benign(0.159) TCGA-YD-A89C-06 8 133141958 133141958 C T KCNQ3 Missense_Mutation p.G724R 0.31 deleterious(0.04) possibly_damaging(0.642) TCGA-YD-A89C-06 8 139809091 139809091 G A COL22A1 Missense_Mutation p.P523S 0.37 unknown(0) TCGA-YD-A89C-06 8 14181623 14181623 G A SGCZ Missense_Mutation p.H109Y 0.25 deleterious(0.04) benign(0.077) TCGA-YD-A89C-06 8 142200441 142200441 C T DENND3 Nonsense_Mutation p.Q1022* 0.27 TCGA-YD-A89C-06 8 143957229 143957229 C T CYP11B1 Silent p.L340L 0.36 TCGA-YD-A89C-06 8 143996544 143996544 G A CYP11B2 Silent p.A171A 0.39 TCGA-YD-A89C-06 8 144940348 144940348 G A EPPK1 Silent p.P2358P 0.07 TCGA-YD-A89C-06 8 145107470 145107470 G A OPLAH Missense_Mutation p.P1062L 0.33 deleterious(0) probably_damaging(0.992) TCGA-YD-A89C-06 8 145112201 145112201 G A OPLAH Missense_Mutation p.A482V 0.31 tolerated(0.19) benign(0.005) TCGA-YD-A89C-06 8 17218703 17218703 C T MTMR7 Missense_Mutation p.D131N 0.38 tolerated(0.13) benign(0) TCGA-YD-A89C-06 8 1905022 1905022 C T ARHGEF10 Missense_Mutation p.P1210S 0.36 tolerated(0.75) benign(0.02) TCGA-YD-A89C-06 8 2005499 2005499 C T MYOM2 Silent p.A99A 0.50 TCGA-YD-A89C-06 8 2040283 2040283 G A MYOM2 Silent p.V646V 0.36 TCGA-YD-A89C-06 8 22079274 22079274 G A PHYHIP Silent p.P195P 0.36 TCGA-YD-A89C-06 8 22864566 22864566 C T RHOBTB2 Silent p.L292L 0.38 TCGA-YD-A89C-06 8 22972239 22972239 C T TNFRSF10C Missense_Mutation p.S79F 0.29 tolerated(0.17) probably_damaging(0.973) TCGA-YD-A89C-06 8 22972240 22972240 C T TNFRSF10C Silent p.S79S 0.29 TCGA-YD-A89C-06 8 25340941 25340941 T G CDCA2 Missense_Mutation p.D353E 0.40 tolerated(0.16) benign(0.034) TCGA-YD-A89C-06 8 27320604 27320604 C T CHRNA2 Silent p.E452E 0.43 TCGA-YD-A89C-06 8 27394359 27394359 G A EPHX2 Missense_Mutation p.R410K 0.31 tolerated(0.05) benign(0.041) TCGA-YD-A89C-06 8 27457420 27457420 G A CLU Silent p.S347S 0.31 TCGA-YD-A89C-06 8 27528497 27528497 G A SCARA3 Missense_Mutation p.G484R 0.29 deleterious(0) probably_damaging(0.988) TCGA-YD-A89C-06 8 27931930 27931930 C T NUGGC 5'UTR 0.38 TCGA-YD-A89C-06 8 2820805 2820805 G A CSMD1 Silent p.H3131H 0.42 TCGA-YD-A89C-06 8 2830771 2830771 G A CSMD1 Missense_Mutation p.R2931W 0.32 probably_damaging(0.921) TCGA-YD-A89C-06 8 2949038 2949038 C T CSMD1 Missense_Mutation p.A2429T 0.39 probably_damaging(0.977) TCGA-YD-A89C-06 8 30705430 30705430 C T TEX15 Silent p.G368G 0.36 TCGA-YD-A89C-06 8 32621437 32621437 C T NRG1 Silent p.L485L 0.45 TCGA-YD-A89C-06 8 32621797 32621797 G A NRG1 Silent p.E605E 0.28 TCGA-YD-A89C-06 8 36793349 36793349 C T KCNU1 Missense_Mutation p.P1121S 0.42 tolerated_low_confidence(0.41) benign(0.009) TCGA-YD-A89C-06 8 39091459 39091459 G A ADAM32 Missense_Mutation p.R559Q 0.39 tolerated(0.3) benign(0.121) TCGA-YD-A89C-06 8 39442193 39442193 G A ADAM18 Missense_Mutation p.E18K 0.38 tolerated(0.93) benign(0) TCGA-YD-A89C-06 8 39564406 39564406 G A ADAM18 Missense_Mutation p.G667E 0.25 deleterious(0) probably_damaging(0.999) TCGA-YD-A89C-06 8 41548021 41548021 G A ANK1 Missense_Mutation p.R1360W 0.29 deleterious(0) possibly_damaging(0.84) TCGA-YD-A89C-06 8 42295083 42295083 G A SLC20A2 Missense_Mutation p.S316F 0.38 deleterious(0.05) probably_damaging(0.981) TCGA-YD-A89C-06 8 42977919 42977919 C T POMK Missense_Mutation p.P318S 0.34 deleterious(0.01) benign(0.295) TCGA-YD-A89C-06 8 48802882 48802882 G A PRKDC Missense_Mutation p.T1335I 0.35 probably_damaging(0.995) TCGA-YD-A89C-06 8 48887327 48887327 C T MCM4 Missense_Mutation p.R724W 0.41 deleterious(0.02) probably_damaging(0.934) TCGA-YD-A89C-06 8 53085141 53085141 C T ST18 Missense_Mutation p.E94K 0.58 tolerated(0.26) benign(0.009) TCGA-YD-A89C-06 8 54147606 54147606 A G OPRK1 Missense_Mutation p.V108A 0.35 tolerated(0.85) probably_damaging(0.999) TCGA-YD-A89C-06 8 55540995 55540995 A G RP1 Missense_Mutation p.K1518R 0.19 tolerated(0.15) benign(0.021) TCGA-YD-A89C-06 8 55541102 55541102 G A RP1 Missense_Mutation p.E1554K 0.21 tolerated(0.11) benign(0.02) TCGA-YD-A89C-06 8 623395 623395 C T ERICH1 Silent p.E319E 0.38 TCGA-YD-A89C-06 8 62577773 62577773 G A ASPH Intron 0.33 TCGA-YD-A89C-06 8 66989064 66989064 G A DNAJC5B Missense_Mutation p.E97K 0.34 deleterious(0.02) possibly_damaging(0.67) TCGA-YD-A89C-06 8 67929902 67929902 C T PPP1R42 Silent p.L27L 0.42 TCGA-YD-A89C-06 8 68346317 68346317 G A CPA6 Missense_Mutation p.P333S 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 8 70585151 70585151 C T SLCO5A1 Missense_Mutation p.D834N 0.44 tolerated_low_confidence(0.16) benign(0.168) TCGA-YD-A89C-06 8 71499402 71499402 G A TRAM1 Missense_Mutation p.P194S 0.24 tolerated(0.18) benign(0.206) TCGA-YD-A89C-06 8 72127667 72127667 C T EYA1 Missense_Mutation p.G518R 0.29 deleterious(0) probably_damaging(0.994) TCGA-YD-A89C-06 8 7308681 7308681 C T SPAG11B Intron 0.27 TCGA-YD-A89C-06 8 73480025 73480025 C T KCNB2 Missense_Mutation p.S19F 0.30 deleterious(0) probably_damaging(0.923) TCGA-YD-A89C-06 8 73848865 73848865 G A KCNB2 Silent p.K425K 0.44 TCGA-YD-A89C-06 8 76456129 76456129 G A HNF4G Missense_Mutation p.G58R 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A89C-06 8 77616640 77616640 C T ZFHX4 Missense_Mutation p.P106L 0.30 possibly_damaging(0.851) TCGA-YD-A89C-06 8 79645919 79645919 C T IL7 3'UTR 0.36 TCGA-YD-A89C-06 8 8887487 8887487 C T ERI1 Silent p.S331S 0.57 TCGA-YD-A89C-06 8 95189853 95189853 C T CDH17 Missense_Mutation p.A83T 0.41 tolerated(0.44) benign(0.005) TCGA-YD-A89C-06 8 95206933 95206933 C T CDH17 Intron 0.38 TCGA-YD-A89C-06 8 95543269 95543269 G A KIAA1429 Missense_Mutation p.P177S 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-YD-A89C-06 8 99146817 99146817 C T POP1 Missense_Mutation p.S314F 0.29 deleterious(0) possibly_damaging(0.62) TCGA-YD-A89C-06 9 104238646 104238646 G A TMEM246 Silent p.L243L 0.69 TCGA-YD-A89C-06 9 107367767 107367767 T A OR13C2 Missense_Mutation p.I48F 0.58 deleterious(0) possibly_damaging(0.548) TCGA-YD-A89C-06 9 107588035 107588035 G A ABCA1 Missense_Mutation p.S824L 0.60 deleterious(0.02) benign(0.322) TCGA-YD-A89C-06 9 117838371 117838371 C T TNC Missense_Mutation p.G964R 0.81 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 9 119124991 119124991 C T PAPPA Silent p.L1490L 0.77 TCGA-YD-A89C-06 9 121930205 121930205 C T BRINP1 Silent p.L481L 0.62 TCGA-YD-A89C-06 9 123526800 123526800 G A FBXW2 3'UTR 0.72 TCGA-YD-A89C-06 9 123752003 123752003 G A C5 Silent p.I999I 0.72 TCGA-YD-A89C-06 9 125084976 125084976 C T MRRF 3'UTR 0.91 TCGA-YD-A89C-06 9 125140770 125140770 C T PTGS1 Silent p.F90F 0.79 TCGA-YD-A89C-06 9 125330645 125330645 C T OR1L8 Missense_Mutation p.V38I 0.68 tolerated(0.22) benign(0.012) TCGA-YD-A89C-06 9 125391102 125391102 G A OR1B1 Missense_Mutation p.A238V 0.73 deleterious(0.04) benign(0.011) TCGA-YD-A89C-06 9 125438125 125438125 C T OR1L3 Silent p.S239S 0.81 TCGA-YD-A89C-06 9 125551886 125551886 C T OR5C1 Silent p.I225I 0.78 TCGA-YD-A89C-06 9 130588879 130588879 G A ENG Nonsense_Mutation p.Q145* 0.68 TCGA-YD-A89C-06 9 131084791 131084791 G A TRUB2 5'UTR 0.57 TCGA-YD-A89C-06 9 131235921 131235921 C T ODF2 Silent p.T248T 0.83 TCGA-YD-A89C-06 9 131568245 131568245 C T TBC1D13 Silent p.F342F 0.68 TCGA-YD-A89C-06 9 131570181 131570181 T A TBC1D13 3'UTR 0.67 TCGA-YD-A89C-06 9 13168501 13168501 C T MPDZ Missense_Mutation p.G1040S 0.78 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 9 133957478 133957478 G A LAMC3 Silent p.Q1320Q 0.88 TCGA-YD-A89C-06 9 136028988 136028988 C T GBGT1 Silent p.K340K 0.77 TCGA-YD-A89C-06 9 136321698 136321698 G A ADAMTS13 Nonsense_Mutation p.W1250* 0.73 TCGA-YD-A89C-06 9 136321699 136321699 G A ADAMTS13 Nonsense_Mutation p.W1250* 0.71 TCGA-YD-A89C-06 9 137623401 137623401 G A COL5A1 Silent p.T408T 0.76 TCGA-YD-A89C-06 9 139874641 139874641 C T PTGDS Missense_Mutation p.T152I 0.89 deleterious(0.01) possibly_damaging(0.694) TCGA-YD-A89C-06 9 139888321 139888321 C T C9orf142 3'UTR 0.60 TCGA-YD-A89C-06 9 140059868 140059868 C T GRIN1 Intron 0.85 TCGA-YD-A89C-06 9 140865845 140865845 C T CACNA1B Silent p.F448F 0.85 TCGA-YD-A89C-06 9 18829951 18829951 G A ADAMTSL1 Missense_Mutation p.D1409N 0.79 tolerated(0.57) benign(0.004) TCGA-YD-A89C-06 9 23765041 23765041 C T ELAVL2 Intron 0.83 TCGA-YD-A89C-06 9 32631652 32631652 G A TAF1L Missense_Mutation p.S1309L 0.79 tolerated(0.16) possibly_damaging(0.788) TCGA-YD-A89C-06 9 34241937 34241937 C T UBAP1 Missense_Mutation p.S369F 0.76 tolerated(0.49) possibly_damaging(0.509) TCGA-YD-A89C-06 9 35380597 35380597 C T UNC13B Missense_Mutation p.R697W 0.70 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 9 36846881 36846881 G A PAX5 Missense_Mutation p.S353L 0.86 deleterious(0) benign(0.149) TCGA-YD-A89C-06 9 434809 434809 C T DOCK8 Missense_Mutation p.P1638L 0.72 deleterious(0) possibly_damaging(0.764) TCGA-YD-A89C-06 9 69420293 69420293 G A ANKRD20A4 Missense_Mutation p.E395K 0.14 tolerated(0.81) benign(0.066) TCGA-YD-A89C-06 9 71629038 71629038 C T PRKACG 5'UTR 0.71 TCGA-YD-A89C-06 9 72459467 72459467 G A C9orf135 Missense_Mutation p.D63N 0.70 tolerated(0.05) probably_damaging(0.989) TCGA-YD-A89C-06 9 77676462 77676462 C G NMRK1 3'UTR 0.78 TCGA-YD-A89C-06 9 79937993 79937993 C T VPS13A Silent p.N1947N 0.72 TCGA-YD-A89C-06 9 8317738 8317738 T G PTPRD 3'UTR 0.75 TCGA-YD-A89C-06 9 8317784 8317784 A T PTPRD 3'UTR 0.84 TCGA-YD-A89C-06 9 8317785 8317785 A C PTPRD 3'UTR 0.87 TCGA-YD-A89C-06 9 84609978 84609978 C T SPATA31D1 Silent p.C1531C 0.13 TCGA-YD-A89C-06 9 90501018 90501018 C T SPATA31E1 Missense_Mutation p.P539L 0.76 tolerated(0.28) benign(0.155) TCGA-YD-A89C-06 9 90535285 90535285 G A SPATA31C1 RNA 0.81 TCGA-YD-A89C-06 9 916864 916864 C T DMRT1 Silent p.F308F 0.89 TCGA-YD-A89C-06 9 91994532 91994532 C T SEMA4D Missense_Mutation p.G559E 0.75 tolerated(1) benign(0) TCGA-YD-A89C-06 9 95018990 95018990 G A IARS Silent p.L703L 0.80 TCGA-YD-A89C-06 9 95267864 95267864 C T ECM2 Missense_Mutation p.G472E 0.82 deleterious(0.01) probably_damaging(0.937) TCGA-YD-A89C-06 9 99697617 99697617 C T NUTM2G Missense_Mutation p.L241F 0.67 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 100500054 100500054 C A DRP2 Missense_Mutation p.P368H 0.36 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 100667287 100667287 G A HNRNPH2 Missense_Mutation p.S104N 0.37 tolerated(0.08) benign(0.232) TCGA-YD-A89C-06 X 10102565 10102565 T G WWC3 Missense_Mutation p.F898V 0.41 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 X 101139363 101139363 C T ZMAT1 Missense_Mutation p.G346R 0.41 tolerated(0.14) probably_damaging(0.913) TCGA-YD-A89C-06 X 101382009 101382009 G A TCEAL2 Silent p.K69K 0.41 TCGA-YD-A89C-06 X 101572416 101572416 G A NXF2 Missense_Mutation p.R105K 0.24 tolerated(0.48) benign(0.004) TCGA-YD-A89C-06 X 102586392 102586392 G A TCEAL7 Missense_Mutation p.E21K 0.28 tolerated(0.1) benign(0.013) TCGA-YD-A89C-06 X 104464927 104464927 G A TEX13A Missense_Mutation p.A52V 0.34 tolerated(0.3) benign(0.168) TCGA-YD-A89C-06 X 104999305 104999305 C T IL1RAPL2 Missense_Mutation p.L443F 0.36 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 105011463 105011463 G A IL1RAPL2 Missense_Mutation p.E624K 0.46 deleterious_low_confidence(0.03) benign(0.009) TCGA-YD-A89C-06 X 106144132 106144132 G A RIPPLY1 Silent p.F101F 0.41 TCGA-YD-A89C-06 X 106793332 106793332 C T FRMPD3 Silent p.F185F 0.29 TCGA-YD-A89C-06 X 107084471 107084471 G A MID2 Silent p.G192G 0.35 TCGA-YD-A89C-06 X 107977114 107977114 C T IRS4 Missense_Mutation p.G821R 0.33 deleterious(0) unknown(0) TCGA-YD-A89C-06 X 109698433 109698433 C T RGAG1 Nonsense_Mutation p.Q1351* 0.35 TCGA-YD-A89C-06 X 109924822 109924822 C T CHRDL1 Silent p.T348T 0.33 TCGA-YD-A89C-06 X 110390966 110390966 G A PAK3 Missense_Mutation p.G129E 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 11157201 11157201 C G ARHGAP6 Missense_Mutation p.G903R 0.36 tolerated_low_confidence(0.25) benign(0.265) TCGA-YD-A89C-06 X 114250310 114250310 G A IL13RA2 Silent p.L57L 0.44 TCGA-YD-A89C-06 X 115584257 115584257 T A SLC6A14 Missense_Mutation p.F412Y 0.28 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 X 115584258 115584258 T A SLC6A14 Missense_Mutation p.F412L 0.28 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 117053602 117053602 A G KLHL13 Missense_Mutation p.F154S 0.34 deleterious(0) probably_damaging(0.959) TCGA-YD-A89C-06 X 117106709 117106709 A T KLHL13 Intron 0.40 TCGA-YD-A89C-06 X 117577541 117577541 C T WDR44 Silent p.L801L 0.32 TCGA-YD-A89C-06 X 117785973 117785973 G A DOCK11 Missense_Mutation p.G1543E 0.38 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 117907873 117907873 C A IL13RA1 Silent p.T347T 0.31 TCGA-YD-A89C-06 X 118221391 118221391 G A KIAA1210 Missense_Mutation p.P1268S 0.39 tolerated(0.26) benign(0.168) TCGA-YD-A89C-06 X 119005877 119005877 G A NDUFA1 Translation_Start_Site p.M1? 0.32 deleterious(0.05) possibly_damaging(0.584) TCGA-YD-A89C-06 X 119037489 119037489 G A AKAP14 Nonsense_Mutation p.W67* 0.40 TCGA-YD-A89C-06 X 119387684 119387684 A T ZBTB33 Missense_Mutation p.L138F 0.39 tolerated(0.25) benign(0.1) TCGA-YD-A89C-06 X 119389190 119389190 G A ZBTB33 Nonsense_Mutation p.W640* 0.43 TCGA-YD-A89C-06 X 119427880 119427880 G A TMEM255A Silent p.I76I 0.39 TCGA-YD-A89C-06 X 120094417 120094417 C T CT47A6 Silent p.E222E 0.78 TCGA-YD-A89C-06 X 120181538 120181538 G A GLUD2 5'UTR 0.37 TCGA-YD-A89C-06 X 122538600 122538600 G A GRIA3 Silent p.L445L 0.41 TCGA-YD-A89C-06 X 122766739 122766739 C T THOC2 Silent p.L763L 0.34 TCGA-YD-A89C-06 X 123518272 123518272 G A TENM1 Missense_Mutation p.S2170F 0.40 tolerated(0.5) probably_damaging(0.921) TCGA-YD-A89C-06 X 124097644 124097644 G A TENM1 5'UTR 0.33 TCGA-YD-A89C-06 X 125298724 125298724 G A DCAF12L2 Missense_Mutation p.P395L 0.36 tolerated(0.18) benign(0.005) TCGA-YD-A89C-06 X 125298725 125298725 G A DCAF12L2 Missense_Mutation p.P395S 0.36 tolerated(0.11) benign(0.021) TCGA-YD-A89C-06 X 128902282 128902282 C T XPNPEP2 Missense_Mutation p.R616C 0.38 deleterious(0.04) benign(0.368) TCGA-YD-A89C-06 X 12938420 12938420 G A TLR8 Missense_Mutation p.E421K 0.32 tolerated(1) benign(0) TCGA-YD-A89C-06 X 130215804 130215804 C T ARHGAP36 Silent p.L55L 0.40 TCGA-YD-A89C-06 X 130218274 130218274 C T ARHGAP36 Missense_Mutation p.P214L 0.33 tolerated(0.61) possibly_damaging(0.493) TCGA-YD-A89C-06 X 130222842 130222842 G A ARHGAP36 3'UTR 0.29 TCGA-YD-A89C-06 X 130419781 130419781 G A IGSF1 Silent p.G113G 0.34 TCGA-YD-A89C-06 X 130423308 130423308 C T IGSF1 5'UTR 0.33 TCGA-YD-A89C-06 X 131207117 131207117 C T MST4 Nonsense_Mutation p.Q408* 0.28 TCGA-YD-A89C-06 X 131218575 131218575 G A FRMD7 Silent p.I228I 0.27 TCGA-YD-A89C-06 X 133087238 133087238 C T GPC3 Missense_Mutation p.G59E 0.45 tolerated(0.06) possibly_damaging(0.884) TCGA-YD-A89C-06 X 134421124 134421124 A C ZNF75D Missense_Mutation p.L493R 0.36 deleterious(0) probably_damaging(0.99) TCGA-YD-A89C-06 X 134681184 134681184 G A DDX26B Missense_Mutation p.G246R 0.36 tolerated(0.07) probably_damaging(0.963) TCGA-YD-A89C-06 X 134711314 134711314 C T DDX26B Missense_Mutation p.S657F 0.40 deleterious(0.01) benign(0.248) TCGA-YD-A89C-06 X 135049617 135049617 G A MMGT1 Silent p.T56T 0.30 TCGA-YD-A89C-06 X 135428105 135428105 C T GPR112 Missense_Mutation p.S747F 0.35 deleterious(0.03) benign(0.012) TCGA-YD-A89C-06 X 135429691 135429691 G A GPR112 Missense_Mutation p.E1276K 0.38 tolerated(0.09) benign(0.05) TCGA-YD-A89C-06 X 135960202 135960202 G A RBMX Missense_Mutation p.P87L 0.20 tolerated(0.06) benign(0.203) TCGA-YD-A89C-06 X 137939731 137939731 C T FGF13 Missense_Mutation p.E54K 0.35 tolerated_low_confidence(0.28) benign(0.069) TCGA-YD-A89C-06 X 138668577 138668577 G A MCF2 Silent p.V940V 0.32 TCGA-YD-A89C-06 X 138670561 138670561 C T MCF2 Missense_Mutation p.E879K 0.39 deleterious(0) probably_damaging(0.979) TCGA-YD-A89C-06 X 138687894 138687894 C T MCF2 Missense_Mutation p.R588Q 0.39 tolerated(0.07) benign(0.034) TCGA-YD-A89C-06 X 139047676 139047676 G A CXorf66 5'UTR 0.42 TCGA-YD-A89C-06 X 140785652 140785652 C T SPANXD Missense_Mutation p.M88I 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.708) TCGA-YD-A89C-06 X 140967099 140967099 G A MAGEC3 Missense_Mutation p.E133K 0.25 tolerated_low_confidence(0.32) benign(0.003) TCGA-YD-A89C-06 X 141290979 141290979 G A MAGEC2 Silent p.F265F 0.47 TCGA-YD-A89C-06 X 1428509 1428509 G A CSF2RA 3'UTR 0.32 TCGA-YD-A89C-06 X 147919244 147919244 C T AFF2 Missense_Mutation p.S387F 0.31 deleterious(0.02) benign(0.001) TCGA-YD-A89C-06 X 148628460 148628460 C T CXorf40A Silent p.F143F 0.38 TCGA-YD-A89C-06 X 148798123 148798123 G A MAGEA11 Missense_Mutation p.G326E 0.36 deleterious(0) probably_damaging(0.95) TCGA-YD-A89C-06 X 149013407 149013407 C T MAGEA8 Missense_Mutation p.R121C 0.36 deleterious(0.01) possibly_damaging(0.67) TCGA-YD-A89C-06 X 149100810 149100810 G A CXorf40B Silent p.F143F 0.19 TCGA-YD-A89C-06 X 149937467 149937467 C T CD99L2 3'UTR 0.37 TCGA-YD-A89C-06 X 149937468 149937468 G T CD99L2 3'UTR 0.38 TCGA-YD-A89C-06 X 150891238 150891238 C T FATE1 3'UTR 0.46 TCGA-YD-A89C-06 X 150911033 150911033 G A CNGA2 Missense_Mutation p.G170S 0.27 tolerated(0.71) benign(0) TCGA-YD-A89C-06 X 151284191 151284191 G A RP11-1007I13.4 RNA 0.41 TCGA-YD-A89C-06 X 151304107 151304107 G A MAGEA10 5'UTR 0.35 TCGA-YD-A89C-06 X 152128392 152128392 G A ZNF185 Missense_Mutation p.S551N 0.29 deleterious(0.01) possibly_damaging(0.811) TCGA-YD-A89C-06 X 152225919 152225919 G A PNMA3 Silent p.G169G 0.27 TCGA-YD-A89C-06 X 152613073 152613073 G A ZNF275 Silent p.K310K 0.32 TCGA-YD-A89C-06 X 152853819 152853819 G A FAM58A 3'UTR 0.30 TCGA-YD-A89C-06 X 152915080 152915080 C T DUSP9 Missense_Mutation p.P256L 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 153041478 153041478 T G PLXNB3 Missense_Mutation p.F1536C 0.26 deleterious(0) possibly_damaging(0.882) TCGA-YD-A89C-06 X 153130763 153130763 G A L1CAM Missense_Mutation p.P914S 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-YD-A89C-06 X 153136550 153136550 G A L1CAM Missense_Mutation p.P162L 0.39 tolerated(0.22) benign(0.012) TCGA-YD-A89C-06 X 153136551 153136551 G A L1CAM Missense_Mutation p.P162S 0.40 tolerated(0.38) benign(0.217) TCGA-YD-A89C-06 X 153137773 153137773 G A L1CAM Silent p.P78P 0.37 TCGA-YD-A89C-06 X 153137774 153137774 G A L1CAM Missense_Mutation p.P78L 0.34 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 153141352 153141352 G A L1CAM 5'UTR 0.32 TCGA-YD-A89C-06 X 153689674 153689674 A C PLXNA3 Missense_Mutation p.E277A 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A89C-06 X 153716473 153716473 C T SLC10A3 Silent p.G269G 0.34 TCGA-YD-A89C-06 X 153735204 153735204 C T FAM3A Missense_Mutation p.E211K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A89C-06 X 154159416 154159416 C T F8 Silent p.G883G 0.24 TCGA-YD-A89C-06 X 154194725 154194725 G A F8 Missense_Mutation p.P416L 0.28 deleterious(0) probably_damaging(0.998) TCGA-YD-A89C-06 X 15593917 15593917 G A ACE2 Silent p.F438F 0.33 TCGA-YD-A89C-06 X 15780908 15780908 C T CA5B Intron 0.59 TCGA-YD-A89C-06 X 19369383 19369383 C T PDHA1 Intron 0.38 TCGA-YD-A89C-06 X 208240 208240 C T PLCXD1 Silent p.F156F 0.33 TCGA-YD-A89C-06 X 21863426 21863426 C T MBTPS2 Missense_Mutation p.S121F 0.31 tolerated_low_confidence(0.7) benign(0.137) TCGA-YD-A89C-06 X 21874831 21874831 G A YY2 Missense_Mutation p.E77K 0.36 deleterious(0) probably_damaging(0.928) TCGA-YD-A89C-06 X 22292031 22292031 C T ZNF645 Missense_Mutation p.S308L 0.40 tolerated(1) benign(0) TCGA-YD-A89C-06 X 23411151 23411151 C T PTCHD1 Missense_Mutation p.L506F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A89C-06 X 27996997 27996997 G A DCAF8L1 3'UTR 0.43 TCGA-YD-A89C-06 X 27997720 27997720 C T DCAF8L1 Missense_Mutation p.D578N 0.31 tolerated(0.09) benign(0.049) TCGA-YD-A89C-06 X 2836069 2836069 G A ARSD Silent p.T213T 0.44 TCGA-YD-A89C-06 X 29417317 29417317 G A IL1RAPL1 Missense_Mutation p.D199N 0.40 tolerated(0.58) benign(0.028) TCGA-YD-A89C-06 X 2951421 2951421 C T ARSH Missense_Mutation p.P562S 0.37 deleterious_low_confidence(0) benign(0.212) TCGA-YD-A89C-06 X 30326935 30326935 C T NR0B1 Silent p.G182G 0.30 TCGA-YD-A89C-06 X 3235716 3235716 G A MXRA5 Silent p.I2002I 0.50 TCGA-YD-A89C-06 X 32407761 32407761 G A DMD Nonsense_Mutation p.R1459* 0.37 TCGA-YD-A89C-06 X 32827619 32827619 C T DMD Missense_Mutation p.D214N 0.40 probably_damaging(0.944) TCGA-YD-A89C-06 X 34648488 34648488 G A TMEM47 Missense_Mutation p.S163L 0.35 tolerated(0.17) probably_damaging(0.988) TCGA-YD-A89C-06 X 36162697 36162697 C T CHDC2 Missense_Mutation p.P427L 0.42 tolerated_low_confidence(0.16) benign(0.012) TCGA-YD-A89C-06 X 37027579 37027579 C T FAM47C Missense_Mutation p.L366F 0.39 tolerated(0.15) possibly_damaging(0.55) TCGA-YD-A89C-06 X 37969664 37969664 G A SYTL5 Missense_Mutation p.E531K 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 38146377 38146377 G A RPGR Silent p.I625I 0.30 TCGA-YD-A89C-06 X 38546880 38546880 C T TSPAN7 Silent p.L237L 0.43 TCGA-YD-A89C-06 X 39933450 39933450 G A BCOR Silent p.F383F 0.33 TCGA-YD-A89C-06 X 40456897 40456897 C T ATP6AP2 Missense_Mutation p.S172F 0.41 deleterious(0) probably_damaging(0.94) TCGA-YD-A89C-06 X 43626654 43626654 C T MAOB 3'UTR 0.31 TCGA-YD-A89C-06 X 46332268 46332268 G A KRBOX4 Missense_Mutation p.E113K 0.44 tolerated(0.66) benign(0.095) TCGA-YD-A89C-06 X 47045538 47045538 G A RBM10 Silent p.R835R 0.43 TCGA-YD-A89C-06 X 47104416 47104416 C T USP11 Silent p.A739A 0.26 TCGA-YD-A89C-06 X 48123314 48123314 G A SSX1 Missense_Mutation p.G143E 0.39 tolerated(0.12) possibly_damaging(0.662) TCGA-YD-A89C-06 X 48337027 48337027 G A FTSJ1 Missense_Mutation p.V72M 0.29 deleterious(0) probably_damaging(0.925) TCGA-YD-A89C-06 X 48341089 48341089 G A FTSJ1 Silent p.K288K 0.80 TCGA-YD-A89C-06 X 48819977 48819977 G A KCND1 Silent p.T603T 0.41 TCGA-YD-A89C-06 X 48826136 48826136 C T KCND1 Silent p.T181T 0.36 TCGA-YD-A89C-06 X 48972605 48972605 G A GPKOW Missense_Mutation p.S329L 0.49 tolerated(0.14) benign(0.003) TCGA-YD-A89C-06 X 49104112 49104112 C T CCDC22 Silent p.V325V 0.36 TCGA-YD-A89C-06 X 49853375 49853375 C T CLCN5 Silent p.I526I 0.40 TCGA-YD-A89C-06 X 49958661 49958661 C T AKAP4 Missense_Mutation p.E235K 0.32 deleterious(0.05) benign(0.252) TCGA-YD-A89C-06 X 50136252 50136252 G A DGKK RNA 0.56 TCGA-YD-A89C-06 X 50339718 50339718 G A SHROOM4 Missense_Mutation p.L1487F 0.38 tolerated(0.28) benign(0.013) TCGA-YD-A89C-06 X 51150934 51150934 C T CXorf67 Missense_Mutation p.L356F 0.35 tolerated(0.7) possibly_damaging(0.455) TCGA-YD-A89C-06 X 51640148 51640148 G A MAGED1 Missense_Mutation p.R522Q 0.24 tolerated_low_confidence(0.13) possibly_damaging(0.509) TCGA-YD-A89C-06 X 53560990 53560990 G A HUWE1 Missense_Mutation p.R4334C 0.36 unknown(0) TCGA-YD-A89C-06 X 53572088 53572088 G A HUWE1 Silent p.L3650L 0.56 TCGA-YD-A89C-06 X 53589192 53589192 G A HUWE1 Silent p.I2406I 0.16 TCGA-YD-A89C-06 X 53965495 53965495 C T PHF8 3'UTR 0.57 TCGA-YD-A89C-06 X 54117819 54117819 G A FAM120C Missense_Mutation p.H785Y 0.34 tolerated(0.06) probably_damaging(0.994) TCGA-YD-A89C-06 X 55248291 55248291 G A PAGE5 Missense_Mutation p.G78E 0.28 tolerated(0.12) possibly_damaging(0.541) TCGA-YD-A89C-06 X 55290302 55290302 C T PAGE3 Missense_Mutation p.R12K 0.35 tolerated(0.66) possibly_damaging(0.694) TCGA-YD-A89C-06 X 55744817 55744817 G T RRAGB Missense_Mutation p.M19I 0.31 tolerated_low_confidence(0.11) benign(0.001) TCGA-YD-A89C-06 X 57367775 57367775 C T FAAH2 Nonsense_Mutation p.R232* 0.38 TCGA-YD-A89C-06 X 57619834 57619834 G A ZXDB Silent p.E451E 0.33 TCGA-YD-A89C-06 X 595352 595352 G A SHOX Splice_Site p.X93_splice 0.27 TCGA-YD-A89C-06 X 63411447 63411447 G A AMER1 Missense_Mutation p.R574W 0.43 deleterious(0) possibly_damaging(0.847) TCGA-YD-A89C-06 X 63412713 63412713 C T AMER1 Missense_Mutation p.E152K 0.33 tolerated(0.56) benign(0.015) TCGA-YD-A89C-06 X 67741257 67741257 C T YIPF6 Missense_Mutation p.P118S 0.34 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 67751847 67751847 G A YIPF6 3'UTR 0.43 TCGA-YD-A89C-06 X 69596048 69596048 G A KIF4A Silent p.Q674Q 0.34 TCGA-YD-A89C-06 X 69640098 69640098 G A KIF4A Missense_Mutation p.E1228K 0.55 tolerated_low_confidence(0.67) benign(0) TCGA-YD-A89C-06 X 70148340 70148340 C T SLC7A3 Missense_Mutation p.E225K 0.16 tolerated(1) benign(0.001) TCGA-YD-A89C-06 X 70387547 70387547 C T NLGN3 Missense_Mutation p.P534S 0.40 deleterious(0.02) probably_damaging(1) TCGA-YD-A89C-06 X 70793597 70793597 A G OGT Missense_Mutation p.K1032E 0.32 tolerated(0.73) benign(0) TCGA-YD-A89C-06 X 71425934 71425934 G A ERCC6L Missense_Mutation p.P895S 0.41 tolerated(0.21) benign(0.011) TCGA-YD-A89C-06 X 71872479 71872479 G A PHKA1 Missense_Mutation p.P387L 0.31 deleterious(0.01) probably_damaging(1) TCGA-YD-A89C-06 X 72667252 72667252 G A CDX4 Missense_Mutation p.G55R 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 73744359 73744359 C T SLC16A2 Silent p.P247P 0.43 TCGA-YD-A89C-06 X 73962369 73962369 G A KIAA2022 Silent p.L675L 0.30 TCGA-YD-A89C-06 X 73964153 73964153 G A KIAA2022 Missense_Mutation p.P80L 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A89C-06 X 75650300 75650300 C T MAGEE1 Silent p.S659S 0.41 TCGA-YD-A89C-06 X 77084681 77084681 C T MAGT1 3'UTR 0.32 TCGA-YD-A89C-06 X 77381531 77381531 C T PGK1 3'UTR 0.38 TCGA-YD-A89C-06 X 77912994 77912994 G A ZCCHC5 Silent p.F308F 0.36 TCGA-YD-A89C-06 X 82763951 82763951 A T POU3F4 Nonsense_Mutation p.K207* 0.30 TCGA-YD-A89C-06 X 84526736 84526736 G A ZNF711 Missense_Mutation p.D730N 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A89C-06 X 8565099 8565099 G A KAL1 Nonsense_Mutation p.Q173* 0.35 TCGA-YD-A89C-06 X 92964807 92964807 G A FAM133A Missense_Mutation p.R130K 0.21 tolerated_low_confidence(1) unknown(0) TCGA-YD-A89C-06 X 96139312 96139312 G A RPA4 Translation_Start_Site p.M1? 0.41 tolerated(0.13) benign(0.026) TCGA-YD-A89C-06 X 96603215 96603215 A - DIAPH2 Frame_Shift_Del p.D982Afs*5 0.25 TCGA-YD-A89C-06 X 99657819 99657819 C T PCDH19 Silent p.K773K 0.34 TCGA-YD-A89C-06 X 99944899 99944899 G A SYTL4 Missense_Mutation p.S289F 0.42 deleterious(0.04) benign(0.002) TCGA-YD-A9TA-06 10 100015492 100015492 G A LOXL4 Missense_Mutation p.T478I 0.37 deleterious(0) probably_damaging(0.989) TCGA-YD-A9TA-06 10 100148193 100148193 G A PYROXD2 Silent p.S455S 0.31 TCGA-YD-A9TA-06 10 100150734 100150734 G A PYROXD2 Intron 0.34 TCGA-YD-A9TA-06 10 100150735 100150735 G A PYROXD2 Intron 0.34 TCGA-YD-A9TA-06 10 101165953 101165953 G A GOT1 Missense_Mutation p.R160C 0.30 deleterious(0.03) benign(0.055) TCGA-YD-A9TA-06 10 101451243 101451243 C T ENTPD7 Missense_Mutation p.P271S 0.27 tolerated(0.12) benign(0.31) TCGA-YD-A9TA-06 10 102050270 102050270 G A PKD2L1 Missense_Mutation p.L672F 0.56 deleterious(0.01) probably_damaging(0.912) TCGA-YD-A9TA-06 10 102267261 102267261 C T SEC31B Missense_Mutation p.D235N 0.33 deleterious(0) probably_damaging(0.969) TCGA-YD-A9TA-06 10 102568920 102568920 G A PAX2 Silent p.S305S 0.31 TCGA-YD-A9TA-06 10 102732976 102732976 C T SEMA4G Missense_Mutation p.A72V 0.41 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 105172965 105172965 C T PDCD11 Silent p.T357T 0.28 TCGA-YD-A9TA-06 10 105218250 105218250 C T CALHM1 Missense_Mutation p.G87S 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 105362131 105362131 G T SH3PXD2A Silent p.P920P 0.48 TCGA-YD-A9TA-06 10 105561083 105561083 G A SH3PXD2A Missense_Mutation p.S37F 0.35 deleterious(0) possibly_damaging(0.684) TCGA-YD-A9TA-06 10 105926467 105926467 C T WDR96 Missense_Mutation p.E940K 0.31 tolerated(0.29) possibly_damaging(0.493) TCGA-YD-A9TA-06 10 106074177 106074177 G A ITPRIP Missense_Mutation p.P545S 0.30 deleterious_low_confidence(0) benign(0.016) TCGA-YD-A9TA-06 10 106074178 106074178 G A ITPRIP Silent p.T544T 0.30 TCGA-YD-A9TA-06 10 106125602 106125602 G A CCDC147 Missense_Mutation p.E210K 0.22 deleterious(0.02) possibly_damaging(0.538) TCGA-YD-A9TA-06 10 1061721 1061721 C T GTPBP4 Missense_Mutation p.S546F 0.52 deleterious(0.01) possibly_damaging(0.677) TCGA-YD-A9TA-06 10 106974276 106974276 G A SORCS3 Missense_Mutation p.G818R 0.27 tolerated(0.53) possibly_damaging(0.753) TCGA-YD-A9TA-06 10 107023111 107023111 C T SORCS3 Silent p.I1216I 0.35 TCGA-YD-A9TA-06 10 108434891 108434891 G A SORCS1 Missense_Mutation p.S619F 0.33 deleterious(0.01) benign(0.077) TCGA-YD-A9TA-06 10 112044586 112044586 G A MXI1 Silent p.E243E 0.25 TCGA-YD-A9TA-06 10 114136071 114136071 G A ACSL5 Missense_Mutation p.D2N 0.25 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-YD-A9TA-06 10 115312807 115312807 T A HABP2 5'UTR 0.37 TCGA-YD-A9TA-06 10 115423655 115423655 G A NRAP 5'UTR 0.34 TCGA-YD-A9TA-06 10 115536938 115536938 C T PLEKHS1 Missense_Mutation p.H363Y 0.34 tolerated(0.06) possibly_damaging(0.749) TCGA-YD-A9TA-06 10 115644101 115644101 C T NHLRC2 Missense_Mutation p.P334L 0.32 tolerated(0.1) benign(0.082) TCGA-YD-A9TA-06 10 115804275 115804275 C T ADRB1 Silent p.S128S 0.30 TCGA-YD-A9TA-06 10 115978190 115978190 C T TDRD1 Missense_Mutation p.R781C 0.25 deleterious(0) benign(0.197) TCGA-YD-A9TA-06 10 116013460 116013460 G A VWA2 Missense_Mutation p.G35R 0.41 tolerated(0.54) benign(0.071) TCGA-YD-A9TA-06 10 116037727 116037727 G T VWA2 Missense_Mutation p.L207F 0.21 tolerated(1) benign(0.005) TCGA-YD-A9TA-06 10 116045782 116045782 G A VWA2 Missense_Mutation p.R361Q 0.21 tolerated(0.11) benign(0.072) TCGA-YD-A9TA-06 10 116603676 116603676 C T FAM160B1 Silent p.T331T 0.44 TCGA-YD-A9TA-06 10 117309044 117309044 G C ATRNL1 Missense_Mutation p.E1265Q 0.49 tolerated(0.43) probably_damaging(0.994) TCGA-YD-A9TA-06 10 118383590 118383590 G A PNLIPRP2 Missense_Mutation p.E62K 0.39 tolerated(0.18) benign(0.013) TCGA-YD-A9TA-06 10 118460620 118460620 G A HSPA12A Missense_Mutation p.P92L 0.23 deleterious(0) benign(0.037) TCGA-YD-A9TA-06 10 118896132 118896132 C T VAX1 Missense_Mutation p.G94S 0.30 deleterious(0.01) unknown(0) TCGA-YD-A9TA-06 10 119036783 119036783 G A SLC18A2 3'UTR 0.27 TCGA-YD-A9TA-06 10 120810750 120810750 G A EIF3A Silent p.F760F 0.25 TCGA-YD-A9TA-06 10 121618671 121618671 G A MCMBP Missense_Mutation p.P56L 0.33 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 10 122348998 122348998 C T PPAPDC1A Missense_Mutation p.T267I 0.31 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-YD-A9TA-06 10 12238172 12238172 C T CDC123 5'UTR 0.26 TCGA-YD-A9TA-06 10 123844087 123844087 C T TACC2 Missense_Mutation p.S691L 0.38 benign(0.001) TCGA-YD-A9TA-06 10 123845640 123845640 G A TACC2 Missense_Mutation p.D1209N 0.38 possibly_damaging(0.802) TCGA-YD-A9TA-06 10 124008228 124008228 C T TACC2 Silent p.A2821A 0.24 TCGA-YD-A9TA-06 10 124331842 124331842 C T DMBT1 Missense_Mutation p.S67F 0.35 tolerated_low_confidence(0.59) benign(0.104) TCGA-YD-A9TA-06 10 124399803 124399803 C T DMBT1 Missense_Mutation p.P2268L 0.39 tolerated(0.09) probably_damaging(0.999) TCGA-YD-A9TA-06 10 124402671 124402671 C T DMBT1 Silent p.S2333S 0.31 TCGA-YD-A9TA-06 10 124457463 124457463 G A C10orf120 Missense_Mutation p.S265L 0.35 deleterious(0) benign(0.288) TCGA-YD-A9TA-06 10 126090300 126090300 G A OAT Missense_Mutation p.L337F 0.50 deleterious(0.02) benign(0.203) TCGA-YD-A9TA-06 10 127483516 127483516 G A UROS Missense_Mutation p.P198L 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 10 127515188 127515188 C T BCCIP Missense_Mutation p.S65F 0.21 deleterious(0.02) probably_damaging(0.923) TCGA-YD-A9TA-06 10 12867660 12867660 G A CAMK1D Missense_Mutation p.S337N 0.30 tolerated(0.46) benign(0) TCGA-YD-A9TA-06 10 128952172 128952172 C T FAM196A Silent p.T400T 0.30 TCGA-YD-A9TA-06 10 129350882 129350882 C T NPS Silent p.S83S 0.27 TCGA-YD-A9TA-06 10 129682086 129682086 G A CLRN3 Silent p.L95L 0.34 TCGA-YD-A9TA-06 10 129901366 129901366 T G MKI67 Missense_Mutation p.Q2913P 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-YD-A9TA-06 10 129906509 129906509 C G MKI67 Missense_Mutation p.D1199H 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 10 13178932 13178932 T G OPTN 3'UTR 0.34 TCGA-YD-A9TA-06 10 134219158 134219158 C T PWWP2B Missense_Mutation p.S385L 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-YD-A9TA-06 10 134261585 134261585 G A C10orf91 3'UTR 0.30 TCGA-YD-A9TA-06 10 134671141 134671141 C T TTC40 Missense_Mutation p.E1843K 0.30 tolerated(0.4) benign(0) TCGA-YD-A9TA-06 10 135025240 135025240 G A KNDC1 Missense_Mutation p.D1372N 0.29 tolerated(0.43) benign(0.017) TCGA-YD-A9TA-06 10 135103362 135103362 G A TUBGCP2 Silent p.F470F 0.33 TCGA-YD-A9TA-06 10 135368917 135368917 C T SYCE1 Missense_Mutation p.G286R 0.39 tolerated(0.12) benign(0.333) TCGA-YD-A9TA-06 10 15091698 15091698 C T OLAH Missense_Mutation p.P33S 0.32 deleterious(0) probably_damaging(0.955) TCGA-YD-A9TA-06 10 15255460 15255460 G A FAM171A1 Silent p.F709F 0.30 TCGA-YD-A9TA-06 10 15559239 15559239 C T ITGA8 Missense_Mutation p.G1037E 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 10 15648306 15648306 C T ITGA8 Missense_Mutation p.R627K 0.22 tolerated(0.14) benign(0.004) TCGA-YD-A9TA-06 10 15688939 15688939 G A ITGA8 Silent p.F371F 0.36 TCGA-YD-A9TA-06 10 15713626 15713626 C T ITGA8 Missense_Mutation p.E275K 0.29 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 15713627 15713627 C T ITGA8 Silent p.G274G 0.32 TCGA-YD-A9TA-06 10 16948217 16948217 G A CUBN Missense_Mutation p.L2633F 0.40 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 10 17110229 17110229 G A CUBN Missense_Mutation p.H948Y 0.35 tolerated(0.21) benign(0.027) TCGA-YD-A9TA-06 10 17110230 17110230 G A CUBN Silent p.G947G 0.36 TCGA-YD-A9TA-06 10 17113954 17113954 G A CUBN Missense_Mutation p.T773I 0.32 tolerated(0.24) benign(0.02) TCGA-YD-A9TA-06 10 17865324 17865324 G A MRC1L1 Missense_Mutation p.D105N 0.35 benign(0.049) TCGA-YD-A9TA-06 10 20335846 20335846 G A PLXDC2 Missense_Mutation p.D125N 0.37 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TA-06 10 21098779 21098779 G A NEBL Missense_Mutation p.P856L 0.29 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 10 22705694 22705694 G A SPAG6 3'UTR 0.35 TCGA-YD-A9TA-06 10 24802278 24802278 G A KIAA1217 Missense_Mutation p.D698N 0.21 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 10 24833243 24833243 G A KIAA1217 Missense_Mutation p.E1682K 0.32 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 10 24890906 24890906 C T ARHGAP21 Splice_Site p.X949_splice 0.35 TCGA-YD-A9TA-06 10 24890907 24890907 C T ARHGAP21 Silent p.K949K 0.36 TCGA-YD-A9TA-06 10 24896820 24896820 C T ARHGAP21 Missense_Mutation p.S812N 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 25887108 25887108 C T GPR158 Silent p.S851S 0.31 TCGA-YD-A9TA-06 10 26562596 26562596 G A GAD2 Missense_Mutation p.R375Q 0.42 tolerated(0.18) benign(0.003) TCGA-YD-A9TA-06 10 27687564 27687564 G A PTCHD3 Missense_Mutation p.P655S 0.29 deleterious(0) probably_damaging(0.981) TCGA-YD-A9TA-06 10 27688012 27688012 A T PTCHD3 Silent p.I505I 0.39 TCGA-YD-A9TA-06 10 28151513 28151513 C T ARMC4 Silent p.L883L 0.44 TCGA-YD-A9TA-06 10 28229575 28229575 G A ARMC4 Missense_Mutation p.P635S 0.26 tolerated(0.06) possibly_damaging(0.512) TCGA-YD-A9TA-06 10 28412971 28412971 T C MPP7 Missense_Mutation p.I202V 0.39 tolerated(0.91) possibly_damaging(0.785) TCGA-YD-A9TA-06 10 29782306 29782306 C T SVIL Missense_Mutation p.E1286K 0.52 deleterious(0.03) possibly_damaging(0.684) TCGA-YD-A9TA-06 10 30315998 30315998 C T KIAA1462 Missense_Mutation p.E1027K 0.32 deleterious(0.02) possibly_damaging(0.487) TCGA-YD-A9TA-06 10 30316768 30316768 G A KIAA1462 Missense_Mutation p.S770F 0.30 tolerated(0.09) benign(0.052) TCGA-YD-A9TA-06 10 30318611 30318611 C T KIAA1462 Missense_Mutation p.V156I 0.38 deleterious(0.03) possibly_damaging(0.735) TCGA-YD-A9TA-06 10 32856815 32856815 C T CCDC7 Missense_Mutation p.P472L 0.42 tolerated(0.15) benign(0.001) TCGA-YD-A9TA-06 10 32975000 32975000 C T C10ORF68 Missense_Mutation p.P49L 0.31 tolerated(0.3) benign(0.04) TCGA-YD-A9TA-06 10 33165380 33165380 G A C10ORF68 3'UTR 0.25 TCGA-YD-A9TA-06 10 33468970 33468970 C T NRP1 3'UTR 0.26 TCGA-YD-A9TA-06 10 35896960 35896960 C T GJD4 Silent p.F173F 0.45 TCGA-YD-A9TA-06 10 37431159 37431159 G A ANKRD30A Missense_Mutation p.G389E 0.32 tolerated(0.3) probably_damaging(0.972) TCGA-YD-A9TA-06 10 37436363 37436363 G A ANKRD30A Missense_Mutation p.M451I 0.35 tolerated(0.5) benign(0.107) TCGA-YD-A9TA-06 10 37451587 37451587 G A ANKRD30A Silent p.G581G 0.26 TCGA-YD-A9TA-06 10 37506687 37506687 G A ANKRD30A Missense_Mutation p.E994K 0.23 tolerated(0.06) possibly_damaging(0.636) TCGA-YD-A9TA-06 10 37508079 37508079 C T ANKRD30A Nonsense_Mutation p.Q1091* 0.29 TCGA-YD-A9TA-06 10 37508309 37508309 C T ANKRD30A Silent p.F1167F 0.38 TCGA-YD-A9TA-06 10 37508553 37508553 G A ANKRD30A Missense_Mutation p.E1249K 0.45 tolerated(0.22) possibly_damaging(0.651) TCGA-YD-A9TA-06 10 38344403 38344403 C T ZNF33A Missense_Mutation p.R451C 0.37 tolerated(0.65) benign(0) TCGA-YD-A9TA-06 10 43280992 43280992 C T BMS1 Missense_Mutation p.P80L 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 10 43650521 43650521 T C CSGALNACT2 5'UTR 0.43 TCGA-YD-A9TA-06 10 44052159 44052159 G A ZNF239 Missense_Mutation p.P457S 0.57 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-YD-A9TA-06 10 44053204 44053204 C T ZNF239 Silent p.K108K 0.46 TCGA-YD-A9TA-06 10 45430330 45430330 G T TMEM72 Silent p.G192G 0.22 TCGA-YD-A9TA-06 10 46261206 46261206 C T FAM21C Missense_Mutation p.S606F 0.38 deleterious(0) benign(0.391) TCGA-YD-A9TA-06 10 46280115 46280115 C T FAM21C Missense_Mutation p.L861F 0.30 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 46999558 46999558 C T GPRIN2 Silent p.C226C 0.16 TCGA-YD-A9TA-06 10 48389754 48389754 C T RBP3 Missense_Mutation p.G375D 0.17 tolerated(0.72) probably_damaging(0.997) TCGA-YD-A9TA-06 10 49414862 49414862 C T FRMPD2 Missense_Mutation p.E576K 0.09 deleterious(0.02) possibly_damaging(0.859) TCGA-YD-A9TA-06 10 5009284 5009284 A T AKR1C1 Intron 0.24 TCGA-YD-A9TA-06 10 50121467 50121467 G A LRRC18 Missense_Mutation p.S245F 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 10 50121787 50121787 G A LRRC18 Silent p.T138T 0.46 TCGA-YD-A9TA-06 10 50122006 50122006 G A LRRC18 Silent p.I65I 0.33 TCGA-YD-A9TA-06 10 50315919 50315919 G A VSTM4 Silent p.A59A 0.39 TCGA-YD-A9TA-06 10 50667065 50667065 G T ERCC6 Missense_Mutation p.D1426E 0.15 tolerated(1) benign(0.005) TCGA-YD-A9TA-06 10 50667085 50667085 G C ERCC6 Missense_Mutation p.P1420A 0.18 tolerated(0.17) benign(0.011) TCGA-YD-A9TA-06 10 50723729 50723729 G A ERCC6-PGBD3 Missense_Mutation p.R946C 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A9TA-06 10 50723730 50723730 G A ERCC6-PGBD3 Silent p.I945I 0.20 TCGA-YD-A9TA-06 10 50724011 50724011 G A ERCC6-PGBD3 Missense_Mutation p.P852S 0.38 tolerated_low_confidence(0.13) unknown(0) TCGA-YD-A9TA-06 10 50818890 50818890 T G SLC18A3 Missense_Mutation p.V35G 0.38 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 10 50954922 50954922 G A OGDHL Silent p.V390V 0.29 TCGA-YD-A9TA-06 10 52071137 52071137 C T SGMS1 Missense_Mutation p.M260I 0.36 tolerated(0.06) benign(0.016) TCGA-YD-A9TA-06 10 52103437 52103437 G A SGMS1 Silent p.F146F 0.30 TCGA-YD-A9TA-06 10 5443048 5443048 C T TUBAL3 Silent p.R2R 0.39 TCGA-YD-A9TA-06 10 5541132 5541132 G A CALML5 Silent p.F90F 0.29 TCGA-YD-A9TA-06 10 5541147 5541147 G A CALML5 Silent p.V85V 0.29 TCGA-YD-A9TA-06 10 55583058 55583058 C T PCDH15 Silent p.R1478R 0.34 TCGA-YD-A9TA-06 10 55616968 55616968 G A PCDH15 Missense_Mutation p.T1258I 0.39 deleterious(0.01) possibly_damaging(0.677) TCGA-YD-A9TA-06 10 55698656 55698656 C T PCDH15 Missense_Mutation p.E1098K 0.58 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 10 55719518 55719518 G A PCDH15 Silent p.I1032I 0.14 TCGA-YD-A9TA-06 10 55755314 55755314 G A PCDH15 Intron 0.29 TCGA-YD-A9TA-06 10 61830876 61830876 G A ANK3 Missense_Mutation p.P3255S 0.35 probably_damaging(0.992) TCGA-YD-A9TA-06 10 61831515 61831515 C T ANK3 Missense_Mutation p.E3042K 0.35 probably_damaging(0.959) TCGA-YD-A9TA-06 10 61868657 61868657 G A ANK3 Missense_Mutation p.P1035L 0.22 probably_damaging(1) TCGA-YD-A9TA-06 10 61946635 61946635 C T ANK3 Silent p.K641K 0.23 TCGA-YD-A9TA-06 10 61956365 61956365 G A ANK3 Missense_Mutation p.H570Y 0.31 probably_damaging(0.995) TCGA-YD-A9TA-06 10 62648398 62648398 G A RHOBTB1 Missense_Mutation p.A343V 0.38 tolerated(0.6) benign(0.001) TCGA-YD-A9TA-06 10 64136544 64136544 C T ZNF365 Missense_Mutation p.R198W 0.50 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 10 6483987 6483987 G A PRKCQ Silent p.L568L 0.25 TCGA-YD-A9TA-06 10 6553088 6553088 G A PRKCQ Missense_Mutation p.H63Y 0.45 deleterious(0) benign(0.209) TCGA-YD-A9TA-06 10 68381479 68381479 C T CTNNA3 Missense_Mutation p.A449T 0.28 tolerated(0.13) benign(0.027) TCGA-YD-A9TA-06 10 68687016 68687016 G A LRRTM3 Silent p.L114L 0.32 TCGA-YD-A9TA-06 10 69793865 69793865 G A HERC4 Missense_Mutation p.P181L 0.46 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 10 70066569 70066569 G A PBLD Silent p.F11F 0.42 TCGA-YD-A9TA-06 10 71136840 71136840 C T HK1 Silent p.I346I 0.45 TCGA-YD-A9TA-06 10 71921432 71921432 G C SAR1A Missense_Mutation p.L41V 0.33 deleterious(0) probably_damaging(0.932) TCGA-YD-A9TA-06 10 72538240 72538240 G A TBATA Intron 0.50 TCGA-YD-A9TA-06 10 73122196 73122196 C T SLC29A3 Missense_Mutation p.S420F 0.22 deleterious(0.01) possibly_damaging(0.74) TCGA-YD-A9TA-06 10 73406441 73406441 G A CDH23 Missense_Mutation p.G506R 0.21 deleterious_low_confidence(0) benign(0) TCGA-YD-A9TA-06 10 74183039 74183039 G A MICU1 Silent p.L342L 0.40 TCGA-YD-A9TA-06 10 74653449 74653449 C T OIT3 5'UTR 0.30 TCGA-YD-A9TA-06 10 74671549 74671549 G A OIT3 Missense_Mutation p.E248K 0.24 tolerated(0.12) benign(0.017) TCGA-YD-A9TA-06 10 75487058 75487058 G A RP11-464F9.1 RNA 0.38 TCGA-YD-A9TA-06 10 75671343 75671343 C T PLAU Silent p.L10L 0.24 TCGA-YD-A9TA-06 10 76732371 76732371 G A KAT6B Silent p.P345P 0.34 TCGA-YD-A9TA-06 10 7769688 7769688 C T ITIH2 Silent p.L392L 0.40 TCGA-YD-A9TA-06 10 78943208 78943208 A G KCNMA1 Missense_Mutation p.V260A 0.41 deleterious(0.03) possibly_damaging(0.681) TCGA-YD-A9TA-06 10 79588668 79588668 G A DLG5 Missense_Mutation p.S754F 0.10 deleterious(0) possibly_damaging(0.863) TCGA-YD-A9TA-06 10 81701795 81701795 C T SFTPD Silent p.S155S 0.29 TCGA-YD-A9TA-06 10 81702161 81702161 C T SFTPD Missense_Mutation p.G139E 0.31 deleterious(0.05) probably_damaging(0.965) TCGA-YD-A9TA-06 10 85971434 85971434 G A CDHR1 Missense_Mutation p.E506K 0.29 tolerated(0.21) benign(0.021) TCGA-YD-A9TA-06 10 86131404 86131404 C T CCSER2 Missense_Mutation p.S199F 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-YD-A9TA-06 10 87362172 87362172 G A GRID1 Missense_Mutation p.S963F 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-YD-A9TA-06 10 87407234 87407234 C T GRID1 Intron 0.23 TCGA-YD-A9TA-06 10 88930378 88930378 G A FAM35A Missense_Mutation p.D593N 0.23 tolerated(0.68) possibly_damaging(0.785) TCGA-YD-A9TA-06 10 89117920 89117920 G A NUTM2D 5'UTR 0.24 TCGA-YD-A9TA-06 10 89117921 89117921 A T NUTM2D 5'UTR 0.22 TCGA-YD-A9TA-06 10 89473852 89473852 G A PAPSS2 Missense_Mutation p.E145K 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 10 89720663 89720663 C T PTEN Missense_Mutation p.H272Y 0.47 deleterious(0.02) benign(0.145) TCGA-YD-A9TA-06 10 90497465 90497465 G A LIPK Missense_Mutation p.R248Q 0.40 tolerated(0.64) benign(0.002) TCGA-YD-A9TA-06 10 91144246 91144246 G A IFIT1B Silent p.G392G 0.37 TCGA-YD-A9TA-06 10 91144247 91144247 A T IFIT1B Nonsense_Mutation p.K393* 0.37 TCGA-YD-A9TA-06 10 91196032 91196032 C T SLC16A12 Missense_Mutation p.G358E 0.46 deleterious(0.03) possibly_damaging(0.9) TCGA-YD-A9TA-06 10 91198855 91198855 G A SLC16A12 Silent p.I178I 0.35 TCGA-YD-A9TA-06 10 93390150 93390150 G A PPP1R3C Missense_Mutation p.S163L 0.31 tolerated(0.13) possibly_damaging(0.713) TCGA-YD-A9TA-06 10 95372407 95372407 C T PDE6C 5'UTR 0.45 TCGA-YD-A9TA-06 10 95557423 95557423 A T LGI1 Nonsense_Mutation p.K513* 0.30 TCGA-YD-A9TA-06 10 95718958 95718958 C T PIPSL RNA 0.41 TCGA-YD-A9TA-06 10 95790732 95790732 T A PLCE1 5'UTR 0.16 TCGA-YD-A9TA-06 10 95790885 95790885 G A PLCE1 Missense_Mutation p.E28K 0.35 deleterious_low_confidence(0.01) benign(0.169) TCGA-YD-A9TA-06 10 96580300 96580300 C T CYP2C19 Silent p.I289I 0.30 TCGA-YD-A9TA-06 10 96702120 96702120 C T CYP2C9 Intron 0.34 TCGA-YD-A9TA-06 10 96708881 96708881 C T CYP2C9 Missense_Mutation p.S220F 0.31 deleterious(0) possibly_damaging(0.544) TCGA-YD-A9TA-06 10 96797066 96797066 C T CYP2C8 Missense_Mutation p.G431E 0.31 deleterious(0) possibly_damaging(0.901) TCGA-YD-A9TA-06 10 96802798 96802798 C T CYP2C8 Missense_Mutation p.R333K 0.21 tolerated(0.06) benign(0.066) TCGA-YD-A9TA-06 10 96829112 96829112 G A CYP2C8 Silent p.L16L 0.35 TCGA-YD-A9TA-06 10 96979694 96979694 C T C10orf129 Missense_Mutation p.S389F 0.21 tolerated(0.06) probably_damaging(1) TCGA-YD-A9TA-06 10 97804154 97804154 G A CCNJ Missense_Mutation p.E2K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 10 97969599 97969599 C T BLNK Silent p.R247R 0.37 TCGA-YD-A9TA-06 10 97969600 97969600 C T BLNK Missense_Mutation p.R247Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 10 98084085 98084085 C T DNTT Silent p.F271F 0.26 TCGA-YD-A9TA-06 10 98109492 98109492 C T OPALIN Missense_Mutation p.R55Q 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.776) TCGA-YD-A9TA-06 10 98180742 98180742 G A TLL2 Silent p.I298I 0.28 TCGA-YD-A9TA-06 10 98469666 98469666 G A PIK3AP1 Silent p.L30L 0.22 TCGA-YD-A9TA-06 10 98924611 98924611 C T ARHGAP19-SLIT1 Missense_Mutation p.R504K 0.33 tolerated_low_confidence(0.6) benign(0) TCGA-YD-A9TA-06 11 101323640 101323640 G A TRPC6 3'UTR 0.72 TCGA-YD-A9TA-06 11 101342942 101342942 A G TRPC6 Missense_Mutation p.Y711H 0.69 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 11 1025880 1025880 G C MUC6 Missense_Mutation p.F908L 0.18 unknown(0) TCGA-YD-A9TA-06 11 102820896 102820896 G A MMP13 Missense_Mutation p.S287F 0.63 tolerated(0.06) benign(0.206) TCGA-YD-A9TA-06 11 102826420 102826420 G A MMP13 Silent p.V5V 0.68 TCGA-YD-A9TA-06 11 103157102 103157102 C T DYNC2H1 Missense_Mutation p.S3677F 0.70 probably_damaging(0.914) TCGA-YD-A9TA-06 11 1031902 1031902 G A MUC6 Silent p.G89G 0.58 TCGA-YD-A9TA-06 11 10774246 10774246 C T CTR9 Missense_Mutation p.P25S 0.64 deleterious(0) probably_damaging(0.968) TCGA-YD-A9TA-06 11 111407574 111407574 G A C11orf88 3'UTR 0.75 TCGA-YD-A9TA-06 11 113268025 113268025 G A ANKK1 Silent p.R306R 0.73 TCGA-YD-A9TA-06 11 116691877 116691877 C T APOA4 Silent p.Q299Q 0.71 TCGA-YD-A9TA-06 11 117252459 117252459 C T CEP164 Silent p.P484P 0.82 TCGA-YD-A9TA-06 11 119025268 119025268 G A ABCG4 Missense_Mutation p.E175K 0.47 tolerated(0.35) benign(0.042) TCGA-YD-A9TA-06 11 120833254 120833254 C T GRIK4 Silent p.I710I 0.86 TCGA-YD-A9TA-06 11 120998879 120998879 C T TECTA Silent p.F731F 0.66 TCGA-YD-A9TA-06 11 121000384 121000384 C T TECTA Missense_Mutation p.P802L 0.69 tolerated(0.36) benign(0.008) TCGA-YD-A9TA-06 11 121016577 121016577 C T TECTA Missense_Mutation p.P1286L 0.74 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 11 121016580 121016580 C T TECTA Missense_Mutation p.S1287F 0.75 tolerated(0.12) benign(0.17) TCGA-YD-A9TA-06 11 121340822 121340822 A T SORL1 Missense_Mutation p.K131M 0.71 deleterious(0.01) possibly_damaging(0.614) TCGA-YD-A9TA-06 11 121448042 121448042 C T SORL1 Silent p.I1171I 0.76 TCGA-YD-A9TA-06 11 122830035 122830035 C T C11orf63 Missense_Mutation p.P740L 0.69 tolerated(0.26) benign(0.23) TCGA-YD-A9TA-06 11 122944148 122944148 C T CLMP 3'UTR 0.65 TCGA-YD-A9TA-06 11 122954429 122954429 T A CLMP Missense_Mutation p.K172I 0.64 deleterious(0) possibly_damaging(0.89) TCGA-YD-A9TA-06 11 123524604 123524604 G A SCN3B 5'UTR 0.64 TCGA-YD-A9TA-06 11 123887121 123887121 C T OR10G4 Silent p.P280P 0.57 TCGA-YD-A9TA-06 11 123901121 123901121 G A OR10G8 Silent p.R264R 0.75 TCGA-YD-A9TA-06 11 123993816 123993816 C T VWA5A Silent p.L304L 0.64 TCGA-YD-A9TA-06 11 124121030 124121030 G A OR8G1 Missense_Mutation p.G203D 0.56 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-YD-A9TA-06 11 124619748 124619748 G A VSIG2 Missense_Mutation p.P148S 0.81 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 124626537 124626537 C T ESAM Silent p.Q117Q 0.60 TCGA-YD-A9TA-06 11 124637321 124637321 G C MSANTD2 Silent p.L425L 0.62 TCGA-YD-A9TA-06 11 124740066 124740066 C T ROBO3 Missense_Mutation p.P258S 0.75 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 11 124793283 124793283 G A HEPACAM Silent p.L252L 0.62 TCGA-YD-A9TA-06 11 125359549 125359549 G A FEZ1 Missense_Mutation p.S42F 0.65 deleterious(0.01) benign(0.054) TCGA-YD-A9TA-06 11 125489931 125489931 C T STT3A Silent p.V663V 0.70 TCGA-YD-A9TA-06 11 1269517 1269517 G A MUC5B Missense_Mutation p.G3803S 0.35 unknown(0) TCGA-YD-A9TA-06 11 1270306 1270306 C T MUC5B Silent p.L4066L 0.20 TCGA-YD-A9TA-06 11 1275570 1275570 G A MUC5B Missense_Mutation p.E5156K 0.36 unknown(0) TCGA-YD-A9TA-06 11 130275717 130275717 G A ADAMTS8 Silent p.V802V 0.63 TCGA-YD-A9TA-06 11 130281456 130281456 C T ADAMTS8 Missense_Mutation p.G536R 0.40 deleterious(0.02) possibly_damaging(0.819) TCGA-YD-A9TA-06 11 133795843 133795843 G A IGSF9B Missense_Mutation p.P609S 0.40 tolerated(0.06) probably_damaging(0.929) TCGA-YD-A9TA-06 11 134215013 134215013 G A GLB1L2 Missense_Mutation p.G147S 0.50 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 11 1432821 1432821 C T BRSK2 Missense_Mutation p.P63S 0.56 tolerated_low_confidence(0.4) possibly_damaging(0.803) TCGA-YD-A9TA-06 11 1642553 1642553 G A KRTAP5-4 3'UTR 0.33 TCGA-YD-A9TA-06 11 17496502 17496502 C T ABCC8 Missense_Mutation p.R74Q 0.57 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 11 18195487 18195487 C T MRGPRX4 Silent p.C228C 0.66 TCGA-YD-A9TA-06 11 18425354 18425354 G T LDHA Nonsense_Mutation p.E265* 0.33 TCGA-YD-A9TA-06 11 18955621 18955621 G A MRGPRX1 Silent p.F237F 0.40 TCGA-YD-A9TA-06 11 19076957 19076957 C T MRGPRX2 Silent p.%3D 0.57 TCGA-YD-A9TA-06 11 193749 193749 G A SCGB1C1 Missense_Mutation p.M31I 0.21 tolerated(0.4) benign(0.047) TCGA-YD-A9TA-06 11 20949945 20949945 G A NELL1 Missense_Mutation p.R306K 0.72 tolerated(1) benign(0.173) TCGA-YD-A9TA-06 11 2190963 2190963 C T TH Missense_Mutation p.E108K 0.45 deleterious(0.03) benign(0.004) TCGA-YD-A9TA-06 11 25004728 25004728 C T LUZP2 Silent p.F218F 0.68 TCGA-YD-A9TA-06 11 25071642 25071642 G A LUZP2 Missense_Mutation p.G275E 0.79 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 11 252613 252613 C T PSMD13 3'UTR 0.62 TCGA-YD-A9TA-06 11 2604732 2604732 C T KCNQ1 Missense_Mutation p.S330F 0.47 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 11 27389340 27389340 G A LGR4 3'UTR 0.64 TCGA-YD-A9TA-06 11 2981032 2981032 G A NAP1L4 Silent p.S238S 0.43 TCGA-YD-A9TA-06 11 3249590 3249590 G A MRGPRE Missense_Mutation p.T146I 0.70 tolerated(0.32) benign(0.001) TCGA-YD-A9TA-06 11 34129796 34129796 C T NAT10 Silent p.N8N 0.73 TCGA-YD-A9TA-06 11 3424150 3424150 G A TSSC2 RNA 0.58 TCGA-YD-A9TA-06 11 35515680 35515680 C T PAMR1 Missense_Mutation p.E72K 0.75 tolerated(0.1) probably_damaging(0.998) TCGA-YD-A9TA-06 11 3774622 3774622 G A NUP98 Silent p.T397T 0.12 TCGA-YD-A9TA-06 11 40137176 40137176 C T LRRC4C Missense_Mutation p.E223K 0.69 deleterious(0) probably_damaging(0.989) TCGA-YD-A9TA-06 11 403947 403947 G A PKP3 Silent p.T694T 0.25 TCGA-YD-A9TA-06 11 44257898 44257898 C T EXT2 Missense_Mutation p.S697L 0.79 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 11 45265684 45265684 C T SYT13 Silent p.S400S 0.65 TCGA-YD-A9TA-06 11 4566738 4566738 C T OR52M1 Silent p.I106I 0.50 TCGA-YD-A9TA-06 11 45671404 45671404 G A CHST1 Missense_Mutation p.A357V 0.62 tolerated(0.59) probably_damaging(0.954) TCGA-YD-A9TA-06 11 46333954 46333954 C T CREB3L1 Missense_Mutation p.P278S 0.50 deleterious(0) probably_damaging(0.981) TCGA-YD-A9TA-06 11 4673769 4673769 C T OR51E1 Missense_Mutation p.P5S 0.59 tolerated(0.45) benign(0.004) TCGA-YD-A9TA-06 11 4703603 4703603 G A OR51E2 Silent p.I113I 0.50 TCGA-YD-A9TA-06 11 4703813 4703813 G A OR51E2 Silent p.I43I 0.20 TCGA-YD-A9TA-06 11 47444405 47444405 G A PSMC3 Silent p.A237A 0.67 TCGA-YD-A9TA-06 11 48238453 48238453 C T OR4B1 Missense_Mutation p.P31L 0.69 tolerated(1) benign(0.018) TCGA-YD-A9TA-06 11 48238454 48238454 C T OR4B1 Silent p.P31P 0.68 TCGA-YD-A9TA-06 11 48239225 48239225 G A OR4B1 Silent p.R288R 0.69 TCGA-YD-A9TA-06 11 4825331 4825331 C T OR52R1 Missense_Mutation p.E94K 0.22 deleterious(0.03) benign(0.033) TCGA-YD-A9TA-06 11 48267363 48267363 C T OR4X2 Silent p.F236F 0.69 TCGA-YD-A9TA-06 11 4869627 4869627 G A OR51S1 Missense_Mutation p.P271L 0.60 tolerated(0.21) benign(0) TCGA-YD-A9TA-06 11 4869721 4869721 C T OR51S1 Missense_Mutation p.D240N 0.19 deleterious(0.02) benign(0.094) TCGA-YD-A9TA-06 11 4903571 4903571 C T OR51T1 Silent p.L175L 0.28 TCGA-YD-A9TA-06 11 49175899 49175899 G A FOLH1 Missense_Mutation p.S590F 0.55 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 11 4936324 4936324 C T OR51G2 Missense_Mutation p.M190I 0.18 tolerated(0.27) probably_damaging(0.992) TCGA-YD-A9TA-06 11 4945378 4945378 G A OR51G1 Silent p.F64F 0.07 TCGA-YD-A9TA-06 11 5013194 5013194 G A MMP26 Missense_Mutation p.G199E 0.36 tolerated(1) probably_damaging(0.972) TCGA-YD-A9TA-06 11 5013196 5013196 T A MMP26 Missense_Mutation p.Y200N 0.33 tolerated(0.11) benign(0.329) TCGA-YD-A9TA-06 11 5080666 5080666 G A OR52E2 Silent p.F64F 0.52 TCGA-YD-A9TA-06 11 51515332 51515332 G A OR4C46 Silent p.E17E 0.23 TCGA-YD-A9TA-06 11 51515813 51515813 G A OR4C46 Missense_Mutation p.D178N 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YD-A9TA-06 11 51515823 51515823 C T OR4C46 Missense_Mutation p.P181L 0.52 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-YD-A9TA-06 11 51515824 51515824 T C OR4C46 Silent p.P181P 0.53 TCGA-YD-A9TA-06 11 5255386 5255386 G A HBD Silent p.S50S 0.49 TCGA-YD-A9TA-06 11 5270612 5270612 G A HBG1 Missense_Mutation p.P101S 0.64 deleterious(0.02) benign(0.229) TCGA-YD-A9TA-06 11 5290698 5290698 G A HBE1 Missense_Mutation p.P101S 0.52 deleterious(0.03) possibly_damaging(0.596) TCGA-YD-A9TA-06 11 5411259 5411259 G A OR51M1 Missense_Mutation p.G211R 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 5411429 5411429 G A OR51M1 Missense_Mutation p.M267I 0.28 tolerated(0.11) possibly_damaging(0.591) TCGA-YD-A9TA-06 11 5443627 5443627 C T OR51Q1 Missense_Mutation p.S66F 0.57 deleterious(0.01) benign(0.157) TCGA-YD-A9TA-06 11 5443628 5443628 C T OR51Q1 Silent p.S66S 0.56 TCGA-YD-A9TA-06 11 5461810 5461810 G A OR51I1 Missense_Mutation p.S312F 0.29 deleterious(0.01) possibly_damaging(0.545) TCGA-YD-A9TA-06 11 55037936 55037936 G A TRIM48 3'UTR 0.68 TCGA-YD-A9TA-06 11 55135974 55135974 C T OR4A15 Silent p.F205F 0.29 TCGA-YD-A9TA-06 11 5529094 5529094 G A UBQLN3 Silent p.P565P 0.22 TCGA-YD-A9TA-06 11 5529375 5529375 G A UBQLN3 Missense_Mutation p.P472S 0.58 tolerated(0.21) benign(0.027) TCGA-YD-A9TA-06 11 55340310 55340310 C T OR4C16 Missense_Mutation p.S236F 0.26 deleterious(0.01) benign(0.232) TCGA-YD-A9TA-06 11 5536489 5536489 C T UBQLNL Missense_Mutation p.E395K 0.26 tolerated(0.16) benign(0.052) TCGA-YD-A9TA-06 11 55433342 55433342 G A OR4C6 Missense_Mutation p.A234T 0.56 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-YD-A9TA-06 11 55652977 55652977 C T TRIM51 Missense_Mutation p.P25S 0.18 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 55682049 55682049 C T OR5W2 Missense_Mutation p.E4K 0.59 tolerated(0.52) benign(0.007) TCGA-YD-A9TA-06 11 55735239 55735239 G A OR10AG1 Missense_Mutation p.S234F 0.44 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 11 55735676 55735676 A T OR10AG1 Nonsense_Mutation p.C88* 0.24 TCGA-YD-A9TA-06 11 55872904 55872904 C T OR8H2 Missense_Mutation p.P129L 0.23 deleterious(0) probably_damaging(0.963) TCGA-YD-A9TA-06 11 55905187 55905187 G A OR8J3 Missense_Mutation p.P3L 0.52 tolerated(0.12) benign(0.003) TCGA-YD-A9TA-06 11 55926911 55926911 C T OR8K5 Missense_Mutation p.E295K 0.30 tolerated_low_confidence(1) benign(0) TCGA-YD-A9TA-06 11 55944232 55944232 C T OR5J2 Missense_Mutation p.L47F 0.34 tolerated(0.35) benign(0.003) TCGA-YD-A9TA-06 11 55945023 55945023 C T OR5J2 Silent p.F310F 0.29 TCGA-YD-A9TA-06 11 56020153 56020153 C T OR5T3 Missense_Mutation p.L160F 0.29 deleterious(0.01) probably_damaging(0.958) TCGA-YD-A9TA-06 11 56058290 56058290 C T OR8H1 Silent p.A83A 0.49 TCGA-YD-A9TA-06 11 56086408 56086408 C T OR8K3 Missense_Mutation p.S209L 0.53 tolerated_low_confidence(0.07) benign(0.116) TCGA-YD-A9TA-06 11 56113974 56113974 C T OR8K1 Missense_Mutation p.P154S 0.23 tolerated_low_confidence(0.08) benign(0.271) TCGA-YD-A9TA-06 11 56230740 56230740 C A OR5M9 Missense_Mutation p.L46F 0.39 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 11 56237463 56237463 C T OR5M3 Missense_Mutation p.E171K 0.24 tolerated(0.77) benign(0.02) TCGA-YD-A9TA-06 11 56258219 56258219 G A OR5M8 Missense_Mutation p.L210F 0.56 tolerated(0.06) benign(0.405) TCGA-YD-A9TA-06 11 56344698 56344698 G A OR5M10 Missense_Mutation p.S167F 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-YD-A9TA-06 11 56468240 56468240 C T OR9G1 Missense_Mutation p.S126F 0.06 deleterious(0.01) benign(0.064) TCGA-YD-A9TA-06 11 56949307 56949307 G A LRRC55 5'UTR 0.25 TCGA-YD-A9TA-06 11 56949521 56949521 C T LRRC55 Missense_Mutation p.P52S 0.48 tolerated(0.09) benign(0.313) TCGA-YD-A9TA-06 11 56949923 56949923 G A LRRC55 Missense_Mutation p.D186N 0.58 tolerated(0.7) benign(0.129) TCGA-YD-A9TA-06 11 57003435 57003435 C G APLNR Silent p.S348S 0.25 TCGA-YD-A9TA-06 11 57075918 57075918 G A TNKS1BP1 Missense_Mutation p.P1423S 0.48 tolerated(0.22) benign(0.001) TCGA-YD-A9TA-06 11 5758031 5758031 G A OR56B1 Nonsense_Mutation p.W95* 0.31 TCGA-YD-A9TA-06 11 5776758 5776758 C T OR52N4 Missense_Mutation p.S263F 0.28 deleterious(0.04) benign(0.013) TCGA-YD-A9TA-06 11 57982470 57982470 C T OR1S1 Missense_Mutation p.S85F 0.52 tolerated(0.06) benign(0.019) TCGA-YD-A9TA-06 11 5799474 5799474 G A OR52N5 Missense_Mutation p.R131C 0.27 deleterious(0.01) benign(0.033) TCGA-YD-A9TA-06 11 5809912 5809912 G A OR52N1 Silent p.F45F 0.24 TCGA-YD-A9TA-06 11 58170163 58170163 G A OR5B3 Silent p.A240A 0.31 TCGA-YD-A9TA-06 11 58206693 58206693 C T OR5B12 Missense_Mutation p.G311E 0.43 deleterious_low_confidence(0.04) benign(0.021) TCGA-YD-A9TA-06 11 58379138 58379159 ATTAAAGTGGAAGTAGAGGTGG - ZFP91 Frame_Shift_Del p.I262Rfs*2 0.22 TCGA-YD-A9TA-06 11 5842253 5842253 C T OR52N2 Silent p.L230L 0.28 TCGA-YD-A9TA-06 11 5842342 5842342 C T OR52N2 Silent p.F259F 0.15 TCGA-YD-A9TA-06 11 58602162 58602162 C T GLYATL2 Missense_Mutation p.G209S 0.21 deleterious(0.01) probably_damaging(0.923) TCGA-YD-A9TA-06 11 58602266 58602266 C T GLYATL2 Missense_Mutation p.G174D 0.47 tolerated(0.08) benign(0.419) TCGA-YD-A9TA-06 11 58602267 58602267 C T GLYATL2 Missense_Mutation p.G174S 0.47 tolerated(0.08) benign(0.422) TCGA-YD-A9TA-06 11 5862633 5862633 G A OR52E6 Silent p.L165L 0.29 TCGA-YD-A9TA-06 11 5862699 5862699 G A OR52E6 Silent p.I143I 0.53 TCGA-YD-A9TA-06 11 58979246 58979246 C T MPEG1 Missense_Mutation p.D365N 0.31 deleterious(0.02) possibly_damaging(0.848) TCGA-YD-A9TA-06 11 58980057 58980057 C T MPEG1 Silent p.L94L 0.18 TCGA-YD-A9TA-06 11 5905783 5905783 C T OR52E4 Silent p.F87F 0.51 TCGA-YD-A9TA-06 11 59376145 59376146 - A OSBP Frame_Shift_Ins p.R212Sfs*5 0.14 TCGA-YD-A9TA-06 11 59420337 59420337 G A PATL1 Missense_Mutation p.P426S 0.42 deleterious(0) benign(0.396) TCGA-YD-A9TA-06 11 5969234 5969234 C T OR56A3 Missense_Mutation p.L220F 0.52 tolerated(0.13) benign(0.169) TCGA-YD-A9TA-06 11 59828630 59828630 C T MS4A3 5'UTR 0.24 TCGA-YD-A9TA-06 11 59857202 59857202 G A MS4A2 Missense_Mutation p.E32K 0.57 tolerated(0.15) benign(0.042) TCGA-YD-A9TA-06 11 59943065 59943065 C T MS4A6A Missense_Mutation p.G148E 0.32 tolerated(0.29) possibly_damaging(0.452) TCGA-YD-A9TA-06 11 6007158 6007158 G A OR52L1 3'UTR 0.45 TCGA-YD-A9TA-06 11 6008092 6008092 C T OR52L1 Nonsense_Mutation p.W23* 0.50 TCGA-YD-A9TA-06 11 60183342 60183342 C G MS4A14 Missense_Mutation p.L334V 0.53 tolerated(0.34) benign(0.135) TCGA-YD-A9TA-06 11 60309995 60309995 C T MS4A13 Nonsense_Mutation p.R136* 0.13 TCGA-YD-A9TA-06 11 60476149 60476149 C T MS4A8 Silent p.I143I 0.21 TCGA-YD-A9TA-06 11 60637860 60637860 C T ZP1 Silent p.I246I 0.16 TCGA-YD-A9TA-06 11 60702169 60702169 C T TMEM132A Missense_Mutation p.S591L 0.29 deleterious(0.02) benign(0.002) TCGA-YD-A9TA-06 11 60709547 60709547 T C SLC15A3 Missense_Mutation p.N356S 0.26 tolerated(0.27) benign(0.055) TCGA-YD-A9TA-06 11 61058388 61058388 G A VWCE Missense_Mutation p.P103S 0.45 tolerated(0.14) benign(0.021) TCGA-YD-A9TA-06 11 6129182 6129182 G A OR56B4 Silent p.E58E 0.34 TCGA-YD-A9TA-06 11 61511232 61511232 C T DAGLA Silent p.F800F 0.29 TCGA-YD-A9TA-06 11 62010926 62010926 G A SCGB1D2 Missense_Mutation p.R74Q 0.30 deleterious(0.02) probably_damaging(0.922) TCGA-YD-A9TA-06 11 62064987 62064987 C T SCGB1D4 Missense_Mutation p.D67N 0.23 tolerated(0.17) probably_damaging(0.999) TCGA-YD-A9TA-06 11 62190531 62190531 G A SCGB1A1 Missense_Mutation p.E82K 0.45 tolerated(0.28) possibly_damaging(0.874) TCGA-YD-A9TA-06 11 62292170 62292170 G A AHNAK Missense_Mutation p.S3240L 0.48 possibly_damaging(0.687) TCGA-YD-A9TA-06 11 62341434 62341434 G A EEF1G 5'UTR 0.62 TCGA-YD-A9TA-06 11 6236014 6236014 G A FAM160A2 Silent p.F795F 0.57 TCGA-YD-A9TA-06 11 62384681 62384681 G A B3GAT3 Silent p.F132F 0.46 TCGA-YD-A9TA-06 11 6245357 6245357 G A FAM160A2 Missense_Mutation p.P87L 0.31 tolerated(0.08) benign(0.049) TCGA-YD-A9TA-06 11 62566027 62566027 G A NXF1 Missense_Mutation p.P346L 0.50 deleterious(0) probably_damaging(0.948) TCGA-YD-A9TA-06 11 62677171 62677171 G A CHRM1 3'UTR 0.26 TCGA-YD-A9TA-06 11 62932020 62932020 C T SLC22A25 Missense_Mutation p.E458K 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 62933664 62933664 G A SLC22A25 Silent p.F379F 0.25 TCGA-YD-A9TA-06 11 62996917 62996917 C T SLC22A25 Missense_Mutation p.D70N 0.47 deleterious(0.01) benign(0.104) TCGA-YD-A9TA-06 11 62997038 62997038 G A SLC22A25 Silent p.V29V 0.53 TCGA-YD-A9TA-06 11 63487591 63487591 C T RTN3 Silent p.I539I 0.26 TCGA-YD-A9TA-06 11 63667559 63667559 C T MARK2 Missense_Mutation p.P249S 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 63965420 63965420 C T STIP1 Missense_Mutation p.P333S 0.23 deleterious(0) possibly_damaging(0.872) TCGA-YD-A9TA-06 11 64037644 64037644 G A BAD 3'UTR 0.76 TCGA-YD-A9TA-06 11 64419621 64419621 C T NRXN2 Missense_Mutation p.G808S 0.33 deleterious(0.03) benign(0.031) TCGA-YD-A9TA-06 11 64504452 64504452 G A RASGRP2 Missense_Mutation p.R290W 0.50 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 11 64569072 64569072 G A MAP4K2 Missense_Mutation p.L146F 0.54 deleterious(0) possibly_damaging(0.5) TCGA-YD-A9TA-06 11 64622148 64622148 G A EHD1 Missense_Mutation p.P421L 0.30 deleterious(0) probably_damaging(0.919) TCGA-YD-A9TA-06 11 64677364 64677365 CG - ATG2A Frame_Shift_Del p.T632Sfs*23 0.34 TCGA-YD-A9TA-06 11 64898840 64898840 G A SYVN1 Silent p.F221F 0.23 TCGA-YD-A9TA-06 11 65270965 65270965 G A MALAT1 RNA 0.24 TCGA-YD-A9TA-06 11 65658914 65658914 C T CCDC85B 3'UTR 0.25 TCGA-YD-A9TA-06 11 65715096 65715096 G A TSGA10IP RNA 0.46 TCGA-YD-A9TA-06 11 65715097 65715097 G A TSGA10IP RNA 0.46 TCGA-YD-A9TA-06 11 65812927 65812927 C T GAL3ST3 5'UTR 0.64 TCGA-YD-A9TA-06 11 66082698 66082698 A G CD248 Missense_Mutation p.S601P 0.27 tolerated(0.48) benign(0) TCGA-YD-A9TA-06 11 66190701 66190701 T G NPAS4 Missense_Mutation p.L269R 0.25 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 11 66243197 66243197 G A PELI3 Silent p.Q323Q 0.23 TCGA-YD-A9TA-06 11 66392974 66392974 C T RBM14 Nonsense_Mutation p.Q543* 0.19 TCGA-YD-A9TA-06 11 66620072 66620072 G T PC Silent p.R555R 0.54 TCGA-YD-A9TA-06 11 67219257 67219257 G A GPR152 Silent p.F313F 0.21 TCGA-YD-A9TA-06 11 67412531 67412531 C T ACY3 Missense_Mutation p.E207K 0.52 tolerated(0.08) possibly_damaging(0.752) TCGA-YD-A9TA-06 11 68133095 68133095 C T LRP5 Missense_Mutation p.P314S 0.36 tolerated(0.17) benign(0.381) TCGA-YD-A9TA-06 11 68154146 68154146 G A LRP5 Missense_Mutation p.E460K 0.43 deleterious(0.03) probably_damaging(0.952) TCGA-YD-A9TA-06 11 6816458 6816458 G A OR6A2 Missense_Mutation p.S161F 0.52 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 11 68705660 68705660 C T IGHMBP2 Silent p.A874A 0.45 TCGA-YD-A9TA-06 11 6891573 6891573 C T OR10A2 Silent p.I196I 0.34 TCGA-YD-A9TA-06 11 69062863 69062863 G A MYEOV Silent p.P14P 0.52 TCGA-YD-A9TA-06 11 69062956 69062956 C T MYEOV Silent p.L45L 0.49 TCGA-YD-A9TA-06 11 70194467 70194467 C T PPFIA1 Missense_Mutation p.P702S 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-YD-A9TA-06 11 70331507 70331507 G A SHANK2 Silent p.L1632L 0.64 TCGA-YD-A9TA-06 11 71927890 71927890 G A FOLR2 5'UTR 0.78 TCGA-YD-A9TA-06 11 7439198 7439198 G A SYT9 Silent p.V392V 0.24 TCGA-YD-A9TA-06 11 74800065 74800065 G A OR2AT4 Missense_Mutation p.R232C 0.35 tolerated(0.1) benign(0.015) TCGA-YD-A9TA-06 11 74911324 74911324 C T SLCO2B1 Missense_Mutation p.S552F 0.41 deleterious(0.02) probably_damaging(0.984) TCGA-YD-A9TA-06 11 74914345 74914345 C T SLCO2B1 Intron 0.18 TCGA-YD-A9TA-06 11 74985201 74985201 G A ARRB1 Silent p.F277F 0.47 TCGA-YD-A9TA-06 11 75727929 75727929 C T UVRAG Silent p.F377F 0.22 TCGA-YD-A9TA-06 11 76507253 76507253 C T TSKU Missense_Mutation p.A198V 0.31 tolerated(0.14) benign(0.002) TCGA-YD-A9TA-06 11 76507254 76507254 C T TSKU Silent p.A198A 0.32 TCGA-YD-A9TA-06 11 7660974 7660974 C T PPFIBP2 Silent p.F416F 0.50 TCGA-YD-A9TA-06 11 76804751 76804751 C T CAPN5 Silent p.L63L 0.50 TCGA-YD-A9TA-06 11 76869448 76869448 C T MYO7A Silent p.I325I 0.45 TCGA-YD-A9TA-06 11 76982258 76982258 G A GDPD4 Missense_Mutation p.P106L 0.47 deleterious(0.03) possibly_damaging(0.874) TCGA-YD-A9TA-06 11 771439 771439 G A PDDC1 Intron 0.40 TCGA-YD-A9TA-06 11 7721937 7721937 C T OVCH2 Nonsense_Mutation p.W269* 0.47 TCGA-YD-A9TA-06 11 78383149 78383149 C T TENM4 Missense_Mutation p.D1908N 0.26 tolerated(0.08) probably_damaging(0.969) TCGA-YD-A9TA-06 11 78412726 78412726 G A TENM4 Silent p.V1644V 0.22 TCGA-YD-A9TA-06 11 7846906 7846906 G A OR5P3 Missense_Mutation p.S205F 0.22 tolerated(0.11) benign(0.33) TCGA-YD-A9TA-06 11 7949457 7949457 G A OR10A6 Silent p.F251F 0.47 TCGA-YD-A9TA-06 11 7982863 7982863 C T NLRP10 Missense_Mutation p.R99K 0.15 tolerated(0.53) benign(0.145) TCGA-YD-A9TA-06 11 8119266 8119266 C T TUB Silent p.F352F 0.50 TCGA-YD-A9TA-06 11 82879505 82879505 C T PCF11 Missense_Mutation p.R710C 0.47 deleterious(0.03) possibly_damaging(0.855) TCGA-YD-A9TA-06 11 83243813 83243813 C T DLG2 Missense_Mutation p.E711K 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-YD-A9TA-06 11 836789 836789 C T CD151 Silent p.I99I 0.63 TCGA-YD-A9TA-06 11 85361335 85361335 A T TMEM126A Silent p.I12I 0.29 TCGA-YD-A9TA-06 11 85361337 85361337 C A TMEM126A Missense_Mutation p.T13K 0.29 tolerated(0.92) benign(0.049) TCGA-YD-A9TA-06 11 85593579 85593579 G A CCDC83 Silent p.Q68Q 0.40 TCGA-YD-A9TA-06 11 85630558 85630558 G A CCDC83 3'UTR 0.43 TCGA-YD-A9TA-06 11 86119295 86119295 G A CCDC81 Missense_Mutation p.A366T 0.49 tolerated(0.11) benign(0.248) TCGA-YD-A9TA-06 11 86198467 86198467 G A ME3 Missense_Mutation p.P241S 0.43 deleterious(0) probably_damaging(0.934) TCGA-YD-A9TA-06 11 87020683 87020683 C T TMEM135 Missense_Mutation p.A302V 0.37 tolerated(1) benign(0.049) TCGA-YD-A9TA-06 11 8959391 8959391 C T ASCL3 Silent p.V106V 0.24 TCGA-YD-A9TA-06 11 8959395 8959395 C T ASCL3 Missense_Mutation p.R105Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 11 9082020 9082020 G A SCUBE2 Missense_Mutation p.S301L 0.25 tolerated(0.06) possibly_damaging(0.778) TCGA-YD-A9TA-06 11 92088164 92088164 T G FAT3 Missense_Mutation p.D962E 0.51 probably_damaging(0.999) TCGA-YD-A9TA-06 11 92495019 92495019 C T FAT3 Intron 0.26 TCGA-YD-A9TA-06 11 92533293 92533293 C G FAT3 Missense_Mutation p.P2372A 0.44 probably_damaging(1) TCGA-YD-A9TA-06 11 92534159 92534159 G A FAT3 Missense_Mutation p.M2660I 0.43 benign(0.123) TCGA-YD-A9TA-06 11 92590403 92590403 G A FAT3 Missense_Mutation p.D3797N 0.28 possibly_damaging(0.588) TCGA-YD-A9TA-06 11 92616201 92616201 G A FAT3 Silent p.Q4193Q 0.47 TCGA-YD-A9TA-06 11 92715133 92715133 G A MTNR1B Silent p.R248R 0.30 TCGA-YD-A9TA-06 11 92917681 92917681 A G SLC36A4 Missense_Mutation p.V62A 0.53 tolerated(0.08) benign(0.005) TCGA-YD-A9TA-06 11 92917682 92917682 C T SLC36A4 Missense_Mutation p.V62I 0.51 tolerated(0.23) benign(0.002) TCGA-YD-A9TA-06 11 93836080 93836080 G A HEPHL1 Missense_Mutation p.G859E 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-YD-A9TA-06 11 94126763 94126763 G A GPR83 Missense_Mutation p.P179S 0.35 tolerated(0.15) possibly_damaging(0.859) TCGA-YD-A9TA-06 11 94730745 94730745 T C KDM4D Missense_Mutation p.L70S 0.29 deleterious(0.05) benign(0.134) TCGA-YD-A9TA-06 11 95826542 95826542 C T MAML2 Missense_Mutation p.G218D 0.27 possibly_damaging(0.878) TCGA-YD-A9TA-06 12 100043067 100043067 G A FAM71C Missense_Mutation p.G206E 0.68 tolerated(0.1) benign(0.004) TCGA-YD-A9TA-06 12 100711580 100711580 G A SCYL2 Splice_Site p.X425_splice 0.86 TCGA-YD-A9TA-06 12 101493480 101493480 G A ANO4 Missense_Mutation p.D676N 0.71 tolerated(0.81) possibly_damaging(0.881) TCGA-YD-A9TA-06 12 101520727 101520727 G A ANO4 Missense_Mutation p.R881Q 0.61 tolerated(0.26) probably_damaging(0.999) TCGA-YD-A9TA-06 12 101561910 101561910 G A SLC5A8 Silent p.F428F 0.46 TCGA-YD-A9TA-06 12 101598313 101598313 G A SLC5A8 Missense_Mutation p.R128C 0.70 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 12 101880426 101880426 G T SPIC Silent p.G208G 0.64 TCGA-YD-A9TA-06 12 102796243 102796243 C T IGF1 3'UTR 0.59 TCGA-YD-A9TA-06 12 104134520 104134520 G A STAB2 Missense_Mutation p.G1956E 0.73 deleterious(0) probably_damaging(0.915) TCGA-YD-A9TA-06 12 104480749 104480749 C T HCFC2 Silent p.Y396Y 0.77 TCGA-YD-A9TA-06 12 105151426 105151426 C T CHST11 Missense_Mutation p.P302S 0.64 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 106460633 106460633 C T NUAK1 Missense_Mutation p.D645N 0.63 tolerated(0.63) probably_damaging(0.998) TCGA-YD-A9TA-06 12 106460745 106460745 G A NUAK1 Silent p.F607F 0.53 TCGA-YD-A9TA-06 12 106633525 106633525 G A CKAP4 Silent p.S362S 0.70 TCGA-YD-A9TA-06 12 106895117 106895117 T C POLR3B Missense_Mutation p.Y1001H 0.77 deleterious(0.02) possibly_damaging(0.68) TCGA-YD-A9TA-06 12 10782234 10782234 C T STYK1 Missense_Mutation p.R164Q 0.33 tolerated(0.28) benign(0.071) TCGA-YD-A9TA-06 12 108012001 108012001 G A BTBD11 Silent p.E766E 0.67 TCGA-YD-A9TA-06 12 108603915 108603915 G A WSCD2 Missense_Mutation p.G172E 0.54 deleterious(0) possibly_damaging(0.907) TCGA-YD-A9TA-06 12 108685824 108685824 T A CMKLR1 Missense_Mutation p.I306F 0.24 tolerated(1) benign(0.017) TCGA-YD-A9TA-06 12 109702093 109702093 C T ACACB Missense_Mutation p.R2282C 0.72 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 12 109879469 109879469 G A MYO1H Missense_Mutation p.G847D 0.67 tolerated(0.15) probably_damaging(0.999) TCGA-YD-A9TA-06 12 110226369 110226369 C T TRPV4 Missense_Mutation p.D682N 0.73 deleterious(0.04) probably_damaging(0.986) TCGA-YD-A9TA-06 12 111655741 111655741 G A CUX2 Silent p.E74E 0.74 TCGA-YD-A9TA-06 12 112688810 112688810 G A HECTD4 Silent p.A1081A 0.78 TCGA-YD-A9TA-06 12 113327860 113327860 G A RPH3A Missense_Mutation p.R532Q 0.72 deleterious(0.02) benign(0.266) TCGA-YD-A9TA-06 12 113729741 113729741 C T TPCN1 Silent p.S769S 0.74 TCGA-YD-A9TA-06 12 117662936 117662936 G T NOS1 Silent p.P1271P 0.80 TCGA-YD-A9TA-06 12 117691527 117691527 G A NOS1 Missense_Mutation p.S889F 0.83 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 12 119966451 119966451 C T CCDC60 Missense_Mutation p.R421C 0.76 tolerated(0.18) possibly_damaging(0.711) TCGA-YD-A9TA-06 12 119978577 119978577 C T CCDC60 3'UTR 0.64 TCGA-YD-A9TA-06 12 120576554 120576554 G A GCN1L1 Missense_Mutation p.S2034F 0.79 possibly_damaging(0.646) TCGA-YD-A9TA-06 12 121773460 121773460 G A ANAPC5 Missense_Mutation p.H276Y 0.78 deleterious(0.05) possibly_damaging(0.73) TCGA-YD-A9TA-06 12 122217493 122217493 C T RHOF Missense_Mutation p.D183N 0.83 tolerated(0.23) benign(0.011) TCGA-YD-A9TA-06 12 123498542 123498542 G A PITPNM2 Silent p.I42I 0.73 TCGA-YD-A9TA-06 12 123780518 123780518 G A SBNO1 Silent p.V1373V 0.81 TCGA-YD-A9TA-06 12 124228405 124228405 G A ATP6V0A2 Missense_Mutation p.R371H 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-YD-A9TA-06 12 124415889 124415889 A G DNAH10 Silent p.E4144E 0.18 TCGA-YD-A9TA-06 12 128899650 128899650 C T TMEM132C Silent p.I153I 0.75 TCGA-YD-A9TA-06 12 129559455 129559455 G A TMEM132D Silent p.I755I 0.68 TCGA-YD-A9TA-06 12 129822260 129822260 G A TMEM132D Silent p.P406P 0.71 TCGA-YD-A9TA-06 12 129822261 129822261 G A TMEM132D Missense_Mutation p.P406L 0.70 deleterious(0) benign(0.093) TCGA-YD-A9TA-06 12 130184390 130184390 G A TMEM132D Silent p.I311I 0.79 TCGA-YD-A9TA-06 12 130184654 130184654 G A TMEM132D Silent p.P223P 0.75 TCGA-YD-A9TA-06 12 130184655 130184655 G A TMEM132D Missense_Mutation p.P223L 0.72 deleterious(0.01) benign(0.14) TCGA-YD-A9TA-06 12 130185232 130185232 G A TMEM132D Nonsense_Mutation p.R31* 0.77 TCGA-YD-A9TA-06 12 130847362 130847362 G A PIWIL1 Silent p.G674G 0.79 TCGA-YD-A9TA-06 12 13229005 13229005 C T KIAA1467 Missense_Mutation p.L524F 0.67 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 12 132395258 132395258 C T ULK1 Silent p.S287S 0.62 TCGA-YD-A9TA-06 12 132636630 132636630 C T NOC4L Missense_Mutation p.A440V 0.68 tolerated(0.11) benign(0.084) TCGA-YD-A9TA-06 12 133384657 133384657 G A GOLGA3 Missense_Mutation p.S333L 0.68 tolerated_low_confidence(0.36) benign(0.001) TCGA-YD-A9TA-06 12 133732157 133732157 T C CTD-2140B24.4 Missense_Mutation p.C109R 0.77 tolerated(0.14) benign(0.001) TCGA-YD-A9TA-06 12 18234141 18234141 C T RERGL Missense_Mutation p.R201K 0.63 tolerated(0.45) benign(0.074) TCGA-YD-A9TA-06 12 2064647 2064647 G A DCP1B Missense_Mutation p.P201L 0.61 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 12 21207465 21207465 G A SLCO1B7 Missense_Mutation p.R479K 0.56 tolerated(0.61) benign(0.02) TCGA-YD-A9TA-06 12 21358920 21358920 C T SLCO1B1 Missense_Mutation p.P484S 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-YD-A9TA-06 12 21450475 21450475 G A SLCO1A2 Missense_Mutation p.S313F 0.62 tolerated(0.92) benign(0.002) TCGA-YD-A9TA-06 12 22078929 22078929 G A ABCC9 Missense_Mutation p.S118L 0.48 deleterious(0.01) benign(0.178) TCGA-YD-A9TA-06 12 25679742 25679742 G A IFLTD1 Silent p.F213F 0.46 TCGA-YD-A9TA-06 12 2706434 2706434 C T CACNA1C Silent p.F944F 0.64 TCGA-YD-A9TA-06 12 2791146 2791146 G A CACNA1C Intron 0.59 TCGA-YD-A9TA-06 12 2791147 2791147 G A CACNA1C Intron 0.61 TCGA-YD-A9TA-06 12 29524508 29524508 G A ERGIC2 Missense_Mutation p.P20L 0.35 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 12 29524509 29524509 G A ERGIC2 Missense_Mutation p.P20S 0.35 deleterious(0.04) probably_damaging(0.919) TCGA-YD-A9TA-06 12 29592265 29592265 G A OVCH1 Missense_Mutation p.S1087L 0.37 tolerated_low_confidence(0.23) benign(0.003) TCGA-YD-A9TA-06 12 29640625 29640625 C T OVCH1 Splice_Site p.X298_splice 0.54 TCGA-YD-A9TA-06 12 29709792 29709792 G A TMTC1 Silent p.L558L 0.30 TCGA-YD-A9TA-06 12 2973600 2973600 C T FOXM1 Silent p.P384P 0.70 TCGA-YD-A9TA-06 12 32754322 32754322 C T FGD4 Silent p.F267F 0.68 TCGA-YD-A9TA-06 12 32793501 32793501 C T FGD4 3'UTR 0.56 TCGA-YD-A9TA-06 12 34179674 34179674 C T ALG10 Missense_Mutation p.R416C 0.27 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 40688707 40688707 G A LRRK2 Missense_Mutation p.D957N 0.23 tolerated(0.07) benign(0.253) TCGA-YD-A9TA-06 12 41327500 41327500 C T CNTN1 Missense_Mutation p.P269S 0.28 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 41900324 41900324 G A PDZRN4 Missense_Mutation p.E304K 0.36 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 12 41967234 41967234 C T PDZRN4 Missense_Mutation p.P885S 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-YD-A9TA-06 12 42853550 42853550 A C PRICKLE1 3'UTR 0.38 TCGA-YD-A9TA-06 12 42864101 42864101 C T PRICKLE1 Missense_Mutation p.E65K 0.29 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 43777685 43777685 G A ADAMTS20 Silent p.S1516S 0.30 TCGA-YD-A9TA-06 12 43821268 43821268 G A ADAMTS20 Missense_Mutation p.S1317F 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 43846353 43846353 G A ADAMTS20 Missense_Mutation p.P636S 0.24 tolerated(0.49) benign(0.044) TCGA-YD-A9TA-06 12 43925972 43925972 A T ADAMTS20 Silent p.G160G 0.32 TCGA-YD-A9TA-06 12 4409117 4409117 C T CCND2 Missense_Mutation p.S271L 0.60 tolerated(0.18) benign(0.036) TCGA-YD-A9TA-06 12 4479842 4479842 C T FGF23 Silent p.A141A 0.39 TCGA-YD-A9TA-06 12 45209848 45209848 C T NELL2 Missense_Mutation p.E136K 0.24 deleterious(0) probably_damaging(0.987) TCGA-YD-A9TA-06 12 47173586 47173586 G T SLC38A4 Missense_Mutation p.P212Q 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 4719424 4719424 C T DYRK4 Silent p.F373F 0.47 TCGA-YD-A9TA-06 12 47629014 47629014 C T PCED1B Silent p.F56F 0.40 TCGA-YD-A9TA-06 12 47629950 47629950 C T PCED1B Silent p.F368F 0.38 TCGA-YD-A9TA-06 12 48063977 48063977 G A RPAP3 Missense_Mutation p.S480L 0.22 tolerated(0.3) possibly_damaging(0.879) TCGA-YD-A9TA-06 12 48137815 48137815 C T RAPGEF3 Missense_Mutation p.E545K 0.26 tolerated(0.06) benign(0.2) TCGA-YD-A9TA-06 12 48141636 48141636 C T RAPGEF3 Silent p.V444V 0.28 TCGA-YD-A9TA-06 12 4829825 4829825 G A GALNT8 5'UTR 0.50 TCGA-YD-A9TA-06 12 48367944 48367944 G A COL2A1 Silent p.G1415G 0.32 TCGA-YD-A9TA-06 12 48372480 48372480 C T COL2A1 Missense_Mutation p.R932Q 0.28 unknown(0) TCGA-YD-A9TA-06 12 48920047 48920047 C T OR8S1 Silent p.F211F 0.37 TCGA-YD-A9TA-06 12 49176734 49176734 G A ADCY6 Missense_Mutation p.L162F 0.31 deleterious(0.05) possibly_damaging(0.649) TCGA-YD-A9TA-06 12 49177037 49177037 G A ADCY6 Missense_Mutation p.P61S 0.33 tolerated(0.59) benign(0.008) TCGA-YD-A9TA-06 12 49177038 49177038 G A ADCY6 Silent p.P60P 0.33 TCGA-YD-A9TA-06 12 49254910 49254910 C T RND1 Missense_Mutation p.R108K 0.45 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 12 49391200 49391200 C T DDN Missense_Mutation p.G487R 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.568) TCGA-YD-A9TA-06 12 49433945 49433945 G A KMT2D Silent p.F2536F 0.56 TCGA-YD-A9TA-06 12 49445855 49445855 G A KMT2D Silent p.S537S 0.30 TCGA-YD-A9TA-06 12 49484963 49484963 G A DHH Silent p.F171F 0.36 TCGA-YD-A9TA-06 12 49522172 49522172 G A TUBA1B Missense_Mutation p.H309Y 0.38 deleterious_low_confidence(0.01) benign(0.127) TCGA-YD-A9TA-06 12 49722836 49722836 C T TROAP Silent p.L340L 0.36 TCGA-YD-A9TA-06 12 49724224 49724224 G C TROAP Missense_Mutation p.E532D 0.36 tolerated_low_confidence(0.13) benign(0.01) TCGA-YD-A9TA-06 12 49919822 49919822 T C SPATS2 Silent p.G474G 0.37 TCGA-YD-A9TA-06 12 50027773 50027773 T A PRPF40B Missense_Mutation p.L237H 0.27 tolerated(0.12) possibly_damaging(0.452) TCGA-YD-A9TA-06 12 50190987 50190987 G A NCKAP5L Missense_Mutation p.P219L 0.38 tolerated(0.2) benign(0.035) TCGA-YD-A9TA-06 12 50344963 50344963 C T AQP2 Missense_Mutation p.A117V 0.57 deleterious(0.01) probably_damaging(0.953) TCGA-YD-A9TA-06 12 50390971 50390971 G A RACGAP1 Missense_Mutation p.S299F 0.37 tolerated(0.22) benign(0.02) TCGA-YD-A9TA-06 12 50498378 50498378 C T GPD1 Silent p.I21I 0.35 TCGA-YD-A9TA-06 12 50503355 50503355 G A GPD1 3'UTR 0.50 TCGA-YD-A9TA-06 12 51102297 51102297 T G DIP2B Silent p.P867P 0.50 TCGA-YD-A9TA-06 12 51125212 51125212 C T DIP2B Silent p.F1234F 0.24 TCGA-YD-A9TA-06 12 51693066 51693066 C T BIN2 Missense_Mutation p.E175K 0.32 deleterious(0) probably_damaging(0.95) TCGA-YD-A9TA-06 12 51865209 51865209 C T SLC4A8 Silent p.S599S 0.26 TCGA-YD-A9TA-06 12 52285029 52285029 C T ANKRD33 Silent p.Y433Y 0.53 TCGA-YD-A9TA-06 12 52285030 52285030 C T ANKRD33 Nonsense_Mutation p.Q434* 0.53 TCGA-YD-A9TA-06 12 52754706 52754706 G A KRT85 Silent p.S485S 0.36 TCGA-YD-A9TA-06 12 52788784 52788784 C T KRT82 Missense_Mutation p.G506D 0.49 deleterious_low_confidence(0.01) benign(0.356) TCGA-YD-A9TA-06 12 52862841 52862841 G A KRT6C 3'UTR 0.28 TCGA-YD-A9TA-06 12 52865280 52865280 C T KRT6C Missense_Mutation p.M279I 0.27 deleterious(0.02) benign(0.326) TCGA-YD-A9TA-06 12 52881503 52881503 T C KRT6A 3'UTR 0.13 TCGA-YD-A9TA-06 12 52964492 52964492 C T KRT74 Silent p.L323L 0.35 TCGA-YD-A9TA-06 12 53007500 53007500 G A KRT73 Missense_Mutation p.A319V 0.33 deleterious(0.01) benign(0.247) TCGA-YD-A9TA-06 12 53038778 53038778 A C KRT2 3'UTR 0.27 TCGA-YD-A9TA-06 12 53038943 53038943 C T KRT2 Missense_Mutation p.G594R 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-YD-A9TA-06 12 53096951 53096951 C T KRT77 Missense_Mutation p.G90R 0.50 deleterious(0.04) benign(0.004) TCGA-YD-A9TA-06 12 53096952 53096952 C T KRT77 Silent p.G89G 0.50 TCGA-YD-A9TA-06 12 53205696 53205696 C T KRT4 Silent p.T176T 0.18 TCGA-YD-A9TA-06 12 53207397 53207397 G A KRT4 Missense_Mutation p.A149V 0.23 deleterious(0.01) possibly_damaging(0.599) TCGA-YD-A9TA-06 12 53207856 53207856 G A KRT4 5'UTR 0.49 TCGA-YD-A9TA-06 12 53421577 53421577 C T EIF4B Missense_Mutation p.R227C 0.29 tolerated(0.09) possibly_damaging(0.689) TCGA-YD-A9TA-06 12 53496021 53496021 G A IGFBP6 3'UTR 0.40 TCGA-YD-A9TA-06 12 53567186 53567186 G A CSAD Silent p.A50A 0.41 TCGA-YD-A9TA-06 12 53594100 53594100 C T ITGB7 Missense_Mutation p.G43E 0.36 deleterious(0.03) benign(0.016) TCGA-YD-A9TA-06 12 53700087 53700087 C T C12orf10 Missense_Mutation p.L250F 0.46 tolerated(0.1) benign(0.02) TCGA-YD-A9TA-06 12 53823694 53823694 G A AMHR2 Missense_Mutation p.R407Q 0.33 tolerated(1) benign(0) TCGA-YD-A9TA-06 12 54686624 54686624 C T NFE2 Missense_Mutation p.R219Q 0.33 deleterious(0.02) probably_damaging(0.944) TCGA-YD-A9TA-06 12 54801961 54801961 C T ITGA5 Silent p.L250L 0.29 TCGA-YD-A9TA-06 12 54891655 54891655 C T NCKAP1L Missense_Mutation p.R28C 0.24 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 12 54910750 54910750 G A NCKAP1L Missense_Mutation p.D357N 0.34 deleterious(0.03) possibly_damaging(0.651) TCGA-YD-A9TA-06 12 54922076 54922076 C T NCKAP1L Silent p.I807I 0.29 TCGA-YD-A9TA-06 12 54930776 54930776 C T NCKAP1L Missense_Mutation p.S1041F 0.54 tolerated(0.2) benign(0.049) TCGA-YD-A9TA-06 12 54974818 54974818 G A PPP1R1A Silent p.I140I 0.36 TCGA-YD-A9TA-06 12 55251990 55251990 G A MUCL1 Nonsense_Mutation p.W79* 0.40 TCGA-YD-A9TA-06 12 55420576 55420576 C T NEUROD4 Missense_Mutation p.S118F 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 55421128 55421128 C A NEUROD4 Missense_Mutation p.T302N 0.33 tolerated(0.3) benign(0) TCGA-YD-A9TA-06 12 55421356 55421356 C T NEUROD4 3'UTR 0.27 TCGA-YD-A9TA-06 12 55725574 55725574 C T OR6C3 Silent p.I30I 0.34 TCGA-YD-A9TA-06 12 55794786 55794786 G A OR6C65 Silent p.V158V 0.45 TCGA-YD-A9TA-06 12 55846030 55846030 C T OR6C2 Silent p.I11I 0.29 TCGA-YD-A9TA-06 12 56092358 56092358 C T ITGA7 Nonsense_Mutation p.W338* 0.45 TCGA-YD-A9TA-06 12 56230973 56230973 C T MMP19 Silent p.E458E 0.41 TCGA-YD-A9TA-06 12 56848384 56848384 C T MIP Missense_Mutation p.R5Q 0.27 tolerated(0.36) benign(0.026) TCGA-YD-A9TA-06 12 57390100 57390100 G A GPR182 Silent p.Q369Q 0.32 TCGA-YD-A9TA-06 12 57606379 57606379 C T LRP1 3'UTR 0.40 TCGA-YD-A9TA-06 12 57618978 57618978 C T NXPH4 Silent p.T125T 0.40 TCGA-YD-A9TA-06 12 57864378 57864378 C T GLI1 Missense_Mutation p.P619S 0.40 tolerated(0.24) benign(0.007) TCGA-YD-A9TA-06 12 57921976 57921976 C T MBD6 Missense_Mutation p.P818L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TA-06 12 57966385 57966385 C T KIF5A Missense_Mutation p.S531F 0.35 deleterious(0.01) benign(0.133) TCGA-YD-A9TA-06 12 58135740 58135740 G A AGAP2 5'Flank 0.38 TCGA-YD-A9TA-06 12 6128081 6128081 G A VWF Silent p.F1501F 0.50 TCGA-YD-A9TA-06 12 62687969 62687969 C T USP15 Silent p.V33V 0.21 TCGA-YD-A9TA-06 12 62902327 62902327 C T MON2 Intron 0.70 TCGA-YD-A9TA-06 12 62965204 62965204 C T MON2 Silent p.S1452S 0.56 TCGA-YD-A9TA-06 12 63991649 63991649 A C DPY19L2 Nonsense_Mutation p.Y467* 0.51 TCGA-YD-A9TA-06 12 65847575 65847575 G A MSRB3 Silent p.G127G 0.59 TCGA-YD-A9TA-06 12 66641812 66641812 C T IRAK3 Missense_Mutation p.S551F 0.29 deleterious_low_confidence(0) possibly_damaging(0.668) TCGA-YD-A9TA-06 12 6886442 6886442 C T LAG3 Missense_Mutation p.S357F 0.56 tolerated(0.47) probably_damaging(0.937) TCGA-YD-A9TA-06 12 70003905 70003905 C G LRRC10 Silent p.G238G 0.56 TCGA-YD-A9TA-06 12 70194055 70194055 C T RAB3IP Missense_Mutation p.P335S 0.78 tolerated(0.22) benign(0.067) TCGA-YD-A9TA-06 12 70194056 70194056 C T RAB3IP Missense_Mutation p.P335L 0.78 tolerated(0.05) benign(0.067) TCGA-YD-A9TA-06 12 7031522 7031522 C T ENO2 Missense_Mutation p.P398S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-YD-A9TA-06 12 7047742 7047743 - C ATN1 Frame_Shift_Ins p.Y875Lfs*5 0.33 TCGA-YD-A9TA-06 12 70918320 70918320 T C PTPRB Missense_Mutation p.K2186E 0.80 deleterious(0) benign(0.148) TCGA-YD-A9TA-06 12 71032945 71032945 C T PTPRR 3'UTR 0.71 TCGA-YD-A9TA-06 12 7173176 7173176 C T C1S Missense_Mutation p.P258L 0.47 deleterious(0.03) probably_damaging(0.987) TCGA-YD-A9TA-06 12 7188485 7188485 G A C1R Missense_Mutation p.A438V 0.61 tolerated(0.25) possibly_damaging(0.816) TCGA-YD-A9TA-06 12 71976320 71976320 G A LGR5 Splice_Site p.X546_splice 0.55 TCGA-YD-A9TA-06 12 72956724 72956724 G A TRHDE Missense_Mutation p.G604E 0.67 tolerated(0.97) benign(0.053) TCGA-YD-A9TA-06 12 73056950 73056950 G A TRHDE Nonsense_Mutation p.W1017* 0.78 TCGA-YD-A9TA-06 12 7463230 7463230 G A ACSM4 Missense_Mutation p.E170K 0.64 tolerated(0.56) benign(0.004) TCGA-YD-A9TA-06 12 75874641 75874641 G A GLIPR1 5'UTR 0.73 TCGA-YD-A9TA-06 12 7633762 7633762 G A CD163 Missense_Mutation p.S1113F 0.48 tolerated(0.11) possibly_damaging(0.653) TCGA-YD-A9TA-06 12 7635291 7635291 G A CD163 Silent p.F1065F 0.53 TCGA-YD-A9TA-06 12 7639184 7639184 C T CD163 Missense_Mutation p.G790E 0.49 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 12 7640083 7640083 C T CD163 Missense_Mutation p.G641E 0.53 tolerated(0.09) benign(0.35) TCGA-YD-A9TA-06 12 77424009 77424009 G A E2F7 Missense_Mutation p.P496S 0.72 tolerated(0.14) benign(0.043) TCGA-YD-A9TA-06 12 80714447 80714447 G A OTOGL Missense_Mutation p.E1341K 0.67 tolerated(0.24) possibly_damaging(0.517) TCGA-YD-A9TA-06 12 81657115 81657115 G A PPFIA2 Missense_Mutation p.R1204C 0.71 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-YD-A9TA-06 12 82147800 82147800 G C PPFIA2 Missense_Mutation p.I67M 0.17 tolerated(0.14) benign(0.443) TCGA-YD-A9TA-06 12 8245324 8245324 C T NECAP1 Missense_Mutation p.R146C 0.41 deleterious(0.04) benign(0.009) TCGA-YD-A9TA-06 12 83290104 83290104 C T TMTC2 Missense_Mutation p.P388S 0.58 tolerated(0.21) benign(0.131) TCGA-YD-A9TA-06 12 8377437 8377437 C T FAM90A1 5'UTR 0.55 TCGA-YD-A9TA-06 12 85449636 85449636 G A LRRIQ1 Silent p.E355E 0.76 TCGA-YD-A9TA-06 12 85450500 85450500 G A LRRIQ1 Silent p.E643E 0.74 TCGA-YD-A9TA-06 12 8757866 8757866 C T AICDA Silent p.E124E 0.47 TCGA-YD-A9TA-06 12 88390385 88390385 C T C12orf50 Missense_Mutation p.E110K 0.59 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 12 88898944 88898944 G A KITLG 3'UTR 0.64 TCGA-YD-A9TA-06 12 9001383 9001383 C T A2ML1 Missense_Mutation p.P634L 0.53 tolerated(0.14) benign(0.342) TCGA-YD-A9TA-06 12 91347917 91347917 C T CCER1 Missense_Mutation p.M201I 0.63 deleterious(0.01) benign(0.216) TCGA-YD-A9TA-06 12 9354932 9354932 G A PZP Missense_Mutation p.R155C 0.36 deleterious(0) benign(0.438) TCGA-YD-A9TA-06 12 95475241 95475241 C T FGD6 3'UTR 0.79 TCGA-YD-A9TA-06 12 96415931 96415931 G A LTA4H Silent p.I193I 0.79 TCGA-YD-A9TA-06 12 96418304 96418304 G A LTA4H Missense_Mutation p.L145F 0.62 tolerated(0.26) benign(0.025) TCGA-YD-A9TA-06 12 96418305 96418305 G A LTA4H Silent p.I144I 0.61 TCGA-YD-A9TA-06 12 97158976 97158976 C T C12orf55 Missense_Mutation p.S2754L 0.67 deleterious(0.01) benign(0) TCGA-YD-A9TA-06 12 97330973 97330973 C T NEDD1 Intron 0.61 TCGA-YD-A9TA-06 12 98849808 98849808 G A SLC9A7P1 RNA 0.65 TCGA-YD-A9TA-06 13 102345021 102345037 TGTGAAGACCTCGATGG - ITGBL1 Frame_Shift_Del p.E369Gfs*16 0.68 TCGA-YD-A9TA-06 13 108863574 108863574 G A LIG4 Missense_Mutation p.P15S 0.72 tolerated(0.13) benign(0.401) TCGA-YD-A9TA-06 13 111175921 111175921 C T RAB20 3'UTR 1.00 TCGA-YD-A9TA-06 13 111767860 111767860 C T ARHGEF7 5'UTR 0.62 TCGA-YD-A9TA-06 13 19747965 19747965 G A TUBA3C 3'UTR 0.32 TCGA-YD-A9TA-06 13 19748059 19748059 C T TUBA3C Missense_Mutation p.E433K 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-YD-A9TA-06 13 20716908 20716908 C T GJA3 Missense_Mutation p.E174K 0.53 tolerated(0.22) benign(0.025) TCGA-YD-A9TA-06 13 21549473 21549473 G A LATS2 Missense_Mutation p.P935S 0.49 deleterious(0.01) probably_damaging(0.917) TCGA-YD-A9TA-06 13 21732194 21732194 G A SKA3 Missense_Mutation p.S329L 0.55 deleterious(0.03) possibly_damaging(0.894) TCGA-YD-A9TA-06 13 22070202 22070202 G A MICU2 Missense_Mutation p.P344L 0.21 deleterious(0) probably_damaging(0.935) TCGA-YD-A9TA-06 13 22070203 22070203 G T MICU2 Missense_Mutation p.P344T 0.22 deleterious(0) probably_damaging(0.928) TCGA-YD-A9TA-06 13 23904635 23904635 A C SACS Silent p.A4460A 0.26 TCGA-YD-A9TA-06 13 23909874 23909874 G A SACS Missense_Mutation p.S2714L 0.18 probably_damaging(0.992) TCGA-YD-A9TA-06 13 23911338 23911338 G A SACS Missense_Mutation p.S2226F 0.50 probably_damaging(0.996) TCGA-YD-A9TA-06 13 24466110 24466110 C T C1QTNF9B Missense_Mutation p.G107E 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 13 25280577 25280577 C T ATP12A Silent p.I721I 0.21 TCGA-YD-A9TA-06 13 25399799 25399799 G A RNF17 Missense_Mutation p.E712K 0.28 deleterious(0) benign(0.178) TCGA-YD-A9TA-06 13 25436889 25436889 T G RNF17 Silent p.L1311L 0.29 TCGA-YD-A9TA-06 13 27256818 27256818 C T WASF3 Missense_Mutation p.P353L 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A9TA-06 13 27333419 27333419 G A GPR12 Silent p.L182L 0.34 TCGA-YD-A9TA-06 13 28141910 28141910 G A LNX2 Missense_Mutation p.P241L 0.56 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 13 28141911 28141911 G A LNX2 Missense_Mutation p.P241S 0.56 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 13 28578215 28578215 G A FLT3 Missense_Mutation p.P986S 0.26 tolerated_low_confidence(0.08) benign(0.002) TCGA-YD-A9TA-06 13 29041180 29041180 C T FLT1 Missense_Mutation p.R83K 0.26 tolerated(0.48) benign(0.03) TCGA-YD-A9TA-06 13 29600156 29600156 C T MTUS2 Missense_Mutation p.P451S 0.29 tolerated(0.37) possibly_damaging(0.787) TCGA-YD-A9TA-06 13 31195215 31195215 A T USPL1 5'UTR 0.44 TCGA-YD-A9TA-06 13 31722604 31722604 G A HSPH1 Missense_Mutation p.S384F 0.24 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 13 32526950 32526950 C T EEF1DP3 RNA 0.50 TCGA-YD-A9TA-06 13 32813968 32813968 C T FRY Missense_Mutation p.H2213Y 0.33 tolerated(0.33) probably_damaging(0.985) TCGA-YD-A9TA-06 13 32913176 32913176 C T BRCA2 Nonsense_Mutation p.Q1562* 0.35 TCGA-YD-A9TA-06 13 32918762 32918762 C T BRCA2 Silent p.S2303S 0.60 TCGA-YD-A9TA-06 13 33629372 33629372 C T KL Missense_Mutation p.P507S 0.42 deleterious(0.05) benign(0.41) TCGA-YD-A9TA-06 13 33635652 33635652 C T KL Silent p.I812I 0.29 TCGA-YD-A9TA-06 13 33635653 33635653 C T KL Missense_Mutation p.L813F 0.32 tolerated(0.4) possibly_damaging(0.468) TCGA-YD-A9TA-06 13 33635701 33635701 G A KL Missense_Mutation p.E829K 0.54 tolerated(0.06) benign(0.183) TCGA-YD-A9TA-06 13 35624524 35624524 C T NBEA Missense_Mutation p.P322S 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 13 35624525 35624525 C T NBEA Missense_Mutation p.P322L 0.46 deleterious(0.03) probably_damaging(0.995) TCGA-YD-A9TA-06 13 35683486 35683486 C T NBEA Silent p.Y580Y 0.41 TCGA-YD-A9TA-06 13 36886497 36886497 G A SPG20 Missense_Mutation p.P534L 0.39 deleterious(0.05) benign(0.102) TCGA-YD-A9TA-06 13 37596330 37596330 G A SUPT20H Intron 0.51 TCGA-YD-A9TA-06 13 38143884 38143884 C T POSTN Missense_Mutation p.E782K 0.36 tolerated_low_confidence(0.19) benign(0.007) TCGA-YD-A9TA-06 13 38320325 38320325 G A TRPC4 Missense_Mutation p.P216S 0.40 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 13 39564811 39564811 G A STOML3 Silent p.F16F 0.48 TCGA-YD-A9TA-06 13 39600500 39600500 G A PROSER1 Missense_Mutation p.P132S 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 13 40175422 40175422 G A LHFP 5'UTR 0.50 TCGA-YD-A9TA-06 13 41345233 41345233 G A MRPS31 Missense_Mutation p.L14F 0.30 tolerated_low_confidence(0.51) benign(0.011) TCGA-YD-A9TA-06 13 41345234 41345234 G A MRPS31 Silent p.P13P 0.31 TCGA-YD-A9TA-06 13 45563601 45563601 G A NUFIP1 5'UTR 0.62 TCGA-YD-A9TA-06 13 46357750 46357750 G A SIAH3 Missense_Mutation p.P193L 0.38 tolerated(0.15) possibly_damaging(0.866) TCGA-YD-A9TA-06 13 48651426 48651426 G A MED4 Missense_Mutation p.P221L 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 13 48651427 48651427 G A MED4 Missense_Mutation p.P221S 0.18 tolerated(0.37) probably_damaging(0.996) TCGA-YD-A9TA-06 13 49281143 49281143 C T CYSLTR2 Silent p.L64L 0.26 TCGA-YD-A9TA-06 13 49781307 49781307 C T FNDC3A Nonsense_Mutation p.Q1125* 0.39 TCGA-YD-A9TA-06 13 50285082 50285082 G A KPNA3 Missense_Mutation p.S283L 0.65 deleterious(0) possibly_damaging(0.672) TCGA-YD-A9TA-06 13 50489205 50489205 G A SPRYD7 Silent p.I195I 0.55 TCGA-YD-A9TA-06 13 52532675 52532675 G A ATP7B Silent p.L709L 0.57 TCGA-YD-A9TA-06 13 52536049 52536049 C T ATP7B Missense_Mutation p.E624K 0.44 tolerated(0.54) benign(0.099) TCGA-YD-A9TA-06 13 52539116 52539116 C T ATP7B Silent p.T587T 0.50 TCGA-YD-A9TA-06 13 52542670 52542670 G A ATP7B Silent p.P539P 0.39 TCGA-YD-A9TA-06 13 52952707 52952707 C T THSD1 Silent p.E466E 0.31 TCGA-YD-A9TA-06 13 53298139 53298139 G A LECT1 Missense_Mutation p.S154F 0.52 tolerated(0.99) probably_damaging(0.979) TCGA-YD-A9TA-06 13 53313893 53313893 C T LECT1 5'UTR 0.43 TCGA-YD-A9TA-06 13 53624419 53624419 C T OLFM4 Missense_Mutation p.A349V 0.42 tolerated(0.27) benign(0.1) TCGA-YD-A9TA-06 13 61102527 61102527 C T TDRD3 Missense_Mutation p.H390Y 0.45 tolerated(0.05) benign(0.059) TCGA-YD-A9TA-06 13 61986138 61986138 G A PCDH20 Silent p.V698V 0.35 TCGA-YD-A9TA-06 13 64321316 64321316 C T AL445989.1 Missense_Mutation p.S128F 0.12 unknown(0) TCGA-YD-A9TA-06 13 70281878 70281878 G A KLHL1 Missense_Mutation p.P689L 0.51 tolerated(0.08) probably_damaging(0.925) TCGA-YD-A9TA-06 13 70293537 70293537 G A KLHL1 Missense_Mutation p.S660L 0.36 deleterious(0.02) benign(0.261) TCGA-YD-A9TA-06 13 72440795 72440795 G A DACH1 Missense_Mutation p.S38L 0.33 unknown(0) TCGA-YD-A9TA-06 13 74387145 74387145 G A KLF12 Intron 0.41 TCGA-YD-A9TA-06 13 76112035 76112035 G A COMMD6 5'Flank 0.60 TCGA-YD-A9TA-06 13 76112036 76112036 G A COMMD6 5'Flank 0.61 TCGA-YD-A9TA-06 13 77566214 77566214 G A CLN5 Missense_Mutation p.G43E 0.42 deleterious_low_confidence(0.03) probably_damaging(0.969) TCGA-YD-A9TA-06 13 77672532 77672532 G A MYCBP2 Silent p.P2881P 0.37 TCGA-YD-A9TA-06 13 77672756 77672756 G A MYCBP2 Missense_Mutation p.P2807S 0.50 benign(0.004) TCGA-YD-A9TA-06 13 79894842 79894842 G A RBM26 Nonsense_Mutation p.Q953* 0.39 TCGA-YD-A9TA-06 13 92408601 92408601 G A GPC5 Missense_Mutation p.D403N 0.16 tolerated(0.06) possibly_damaging(0.85) TCGA-YD-A9TA-06 13 92560216 92560216 G A GPC5 Missense_Mutation p.G436R 0.77 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 13 95050777 95050777 G A GPC6 Silent p.V449V 0.83 TCGA-YD-A9TA-06 13 95050778 95050778 G A GPC6 Missense_Mutation p.D450N 0.83 deleterious(0.04) benign(0.02) TCGA-YD-A9TA-06 13 96239975 96239975 G A DZIP1 Missense_Mutation p.P679L 0.77 deleterious(0.02) benign(0.233) TCGA-YD-A9TA-06 13 96246335 96246335 C T DZIP1 Missense_Mutation p.E515K 0.73 tolerated(0.22) benign(0.068) TCGA-YD-A9TA-06 13 97485110 97485110 G A HS6ST3 Silent p.R358R 0.66 TCGA-YD-A9TA-06 13 99339975 99339975 C T SLC15A1 Missense_Mutation p.D563N 0.72 tolerated(0.8) benign(0) TCGA-YD-A9TA-06 13 99371504 99371504 C T SLC15A1 Missense_Mutation p.M209I 0.70 deleterious(0) probably_damaging(0.934) TCGA-YD-A9TA-06 14 100331910 100331910 C T EML1 Missense_Mutation p.P104S 0.17 tolerated(0.25) probably_damaging(0.959) TCGA-YD-A9TA-06 14 100384146 100384146 C T EML1 Missense_Mutation p.P613S 0.39 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 14 100387184 100387184 G A EML1 Missense_Mutation p.E646K 0.47 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 14 100405577 100405577 C T EML1 Silent p.V764V 0.52 TCGA-YD-A9TA-06 14 101349277 101349277 C T RTL1 Missense_Mutation p.E617K 0.20 tolerated(0.32) benign(0.016) TCGA-YD-A9TA-06 14 101493201 101493201 C T MIR329-1 RNA 0.54 TCGA-YD-A9TA-06 14 101506034 101506034 G A MIR376C RNA 0.22 TCGA-YD-A9TA-06 14 101512333 101512333 C T MIR381HG Intron 0.25 TCGA-YD-A9TA-06 14 101518842 101518842 G A MIR487A RNA 0.52 TCGA-YD-A9TA-06 14 102910130 102910130 C T TECPR2 Missense_Mutation p.P967S 0.34 tolerated(0.18) probably_damaging(0.928) TCGA-YD-A9TA-06 14 102910131 102910131 C T TECPR2 Missense_Mutation p.P967L 0.36 deleterious(0) probably_damaging(0.932) TCGA-YD-A9TA-06 14 103601679 103601679 C T TNFAIP2 Silent p.S649S 0.27 TCGA-YD-A9TA-06 14 103958233 103958233 C T MARK3 Missense_Mutation p.P569L 0.47 tolerated(0.56) benign(0) TCGA-YD-A9TA-06 14 103958339 103958339 C T MARK3 Silent p.L604L 0.64 TCGA-YD-A9TA-06 14 105351762 105351762 C T CEP170B Silent p.R609R 0.38 TCGA-YD-A9TA-06 14 105419955 105419955 C T AHNAK2 Silent p.Q611Q 0.52 TCGA-YD-A9TA-06 14 105639575 105639575 G A NUDT14 Missense_Mutation p.S151F 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 14 106066368 106066368 G A IGHE 3'UTR 0.27 TCGA-YD-A9TA-06 14 106091302 106091302 C T IGHG4 Missense_Mutation p.E198K 0.11 tolerated(0.16) benign(0.104) TCGA-YD-A9TA-06 14 106110181 106110181 C T IGHG2 Missense_Mutation p.S146N 0.21 deleterious(0.03) benign(0.208) TCGA-YD-A9TA-06 14 106173792 106173792 C T IGHA1 Missense_Mutation p.D259N 0.16 tolerated(0.07) probably_damaging(0.975) TCGA-YD-A9TA-06 14 106405773 106405773 A C IGHV6-1 Silent p.L67L 0.26 TCGA-YD-A9TA-06 14 106494542 106494542 G A IGHV2-5 Silent p.T12T 0.47 TCGA-YD-A9TA-06 14 106926618 106926618 G A IGHV3-43 Silent p.F9F 0.21 TCGA-YD-A9TA-06 14 106963079 106963079 C T IGHV1-45 Missense_Mutation p.G68E 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-YD-A9TA-06 14 107178893 107178893 G A IGHV2-70 Missense_Mutation p.S95F 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 14 107178927 107178927 G A IGHV2-70 Silent p.L84L 0.33 TCGA-YD-A9TA-06 14 107199112 107199112 A C IGHV3-72 Silent p.A59A 0.49 TCGA-YD-A9TA-06 14 107282830 107282830 G A IGHV7-81 Silent p.L105L 0.18 TCGA-YD-A9TA-06 14 19563673 19563673 C T POTEG Intron 0.22 TCGA-YD-A9TA-06 14 20215762 20215762 C T OR4Q3 Missense_Mutation p.P59L 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 14 20215912 20215912 G A OR4Q3 Missense_Mutation p.G109E 0.11 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 14 20216041 20216041 G A OR4Q3 Missense_Mutation p.G152E 0.13 deleterious(0.01) probably_damaging(0.953) TCGA-YD-A9TA-06 14 20248974 20248974 C T OR4M1 Nonsense_Mutation p.R165* 0.18 TCGA-YD-A9TA-06 14 20249159 20249159 G A OR4M1 Silent p.K226K 0.15 TCGA-YD-A9TA-06 14 20249265 20249265 C T OR4M1 Missense_Mutation p.R262C 0.09 deleterious(0.02) benign(0.066) TCGA-YD-A9TA-06 14 20249356 20249356 G A OR4M1 Missense_Mutation p.R292K 0.10 deleterious(0.01) possibly_damaging(0.777) TCGA-YD-A9TA-06 14 20295908 20295908 C T OR4N2 Missense_Mutation p.L101F 0.10 deleterious(0) possibly_damaging(0.847) TCGA-YD-A9TA-06 14 20344485 20344485 C T OR4K2 Missense_Mutation p.S20F 0.07 deleterious(0.01) possibly_damaging(0.895) TCGA-YD-A9TA-06 14 20388855 20388855 C T OR4K5 Silent p.F30F 0.21 TCGA-YD-A9TA-06 14 20388936 20388936 C T OR4K5 Silent p.S57S 0.13 TCGA-YD-A9TA-06 14 20389533 20389533 C T OR4K5 Silent p.F256F 0.16 TCGA-YD-A9TA-06 14 20404131 20404131 C T OR4K1 Silent p.F102F 0.12 TCGA-YD-A9TA-06 14 20404458 20404458 C T OR4K1 Silent p.F211F 0.10 TCGA-YD-A9TA-06 14 20444600 20444600 C T OR4K15 Missense_Mutation p.P308L 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 14 20444626 20444626 G A OR4K15 Missense_Mutation p.E317K 0.27 tolerated(0.08) possibly_damaging(0.579) TCGA-YD-A9TA-06 14 20612266 20612266 C T OR4N5 Silent p.I124I 0.23 TCGA-YD-A9TA-06 14 21238796 21238796 C T EDDM3B 3'UTR 0.23 TCGA-YD-A9TA-06 14 21825393 21825393 G A SUPT16H Missense_Mutation p.P875S 0.21 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 14 22090489 22090489 G A TRAV1-1 Missense_Mutation p.G32E 0.57 deleterious(0.02) probably_damaging(0.919) TCGA-YD-A9TA-06 14 22090641 22090641 C T TRAV1-1 Missense_Mutation p.R83C 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-YD-A9TA-06 14 22102225 22102225 G A OR10G2 Silent p.V258V 0.54 TCGA-YD-A9TA-06 14 22133532 22133532 C T OR4E2 Missense_Mutation p.P79L 0.22 deleterious(0) possibly_damaging(0.452) TCGA-YD-A9TA-06 14 22133716 22133716 C T OR4E2 Silent p.V140V 0.19 TCGA-YD-A9TA-06 14 22133782 22133782 G A OR4E2 Silent p.L162L 0.47 TCGA-YD-A9TA-06 14 22181016 22181016 C T TRAV2 Silent p.I96I 0.50 TCGA-YD-A9TA-06 14 22279954 22279954 A C TRAV9-1 Missense_Mutation p.Q48P 0.30 tolerated(0.24) benign(0.013) TCGA-YD-A9TA-06 14 22356427 22356427 T G TRAV12-2 Missense_Mutation p.S29A 0.33 deleterious(0.01) benign(0.039) TCGA-YD-A9TA-06 14 22362647 22362647 C T TRAV8-4 5'UTR 0.40 TCGA-YD-A9TA-06 14 22475864 22475864 G A TRAV19 5'UTR 0.20 TCGA-YD-A9TA-06 14 22592139 22592139 A C TRAV26-1 Missense_Mutation p.E75A 0.48 tolerated(0.63) benign(0.002) TCGA-YD-A9TA-06 14 22948542 22948542 G A TRAJ56 Missense_Mutation p.G12E 0.26 unknown(0) TCGA-YD-A9TA-06 14 23006578 23006578 A C TRAJ7 Missense_Mutation p.N5T 0.24 unknown(0) TCGA-YD-A9TA-06 14 23235899 23235899 C T OXA1L Missense_Mutation p.L57F 0.57 tolerated_low_confidence(0.11) benign(0.004) TCGA-YD-A9TA-06 14 23415800 23415800 G A HAUS4 Silent p.T342T 0.57 TCGA-YD-A9TA-06 14 23443310 23443310 G A AJUBA Silent p.I479I 0.24 TCGA-YD-A9TA-06 14 23532710 23532710 G A ACIN1 Missense_Mutation p.P949L 0.30 benign(0.105) TCGA-YD-A9TA-06 14 23567360 23567360 C T C14orf119 3'UTR 0.36 TCGA-YD-A9TA-06 14 23816832 23816832 G A SLC22A17 Silent p.A351A 0.38 TCGA-YD-A9TA-06 14 23826869 23826869 C T EFS Missense_Mutation p.E418K 0.38 tolerated(0.07) benign(0.031) TCGA-YD-A9TA-06 14 23842285 23842285 G A IL25 5'UTR 0.26 TCGA-YD-A9TA-06 14 23863343 23863343 C T MYH6 Silent p.K873K 0.60 TCGA-YD-A9TA-06 14 23884449 23884449 C T MYH7 Missense_Mutation p.E1772K 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-YD-A9TA-06 14 23894092 23894092 C A MYH7 Missense_Mutation p.E855D 0.33 tolerated(0.13) benign(0.228) TCGA-YD-A9TA-06 14 23895023 23895023 G A MYH7 Missense_Mutation p.R723C 0.68 tolerated(0.19) probably_damaging(0.997) TCGA-YD-A9TA-06 14 23895189 23895189 C T MYH7 Missense_Mutation p.G716R 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-YD-A9TA-06 14 24470723 24470723 G A DHRS4L2 Missense_Mutation p.G221E 0.44 tolerated_low_confidence(0.22) benign(0.003) TCGA-YD-A9TA-06 14 24800551 24800551 G A ADCY4 Silent p.L227L 0.21 TCGA-YD-A9TA-06 14 24845873 24845873 C T NFATC4 Silent p.P873P 0.48 TCGA-YD-A9TA-06 14 24877293 24877293 G A NYNRIN Silent p.G139G 0.19 TCGA-YD-A9TA-06 14 25043973 25043973 C T CTSG Missense_Mutation p.E83K 0.28 deleterious(0.02) probably_damaging(0.963) TCGA-YD-A9TA-06 14 33015698 33015698 C G AKAP6 Missense_Mutation p.H613Q 0.40 tolerated(0.19) benign(0.053) TCGA-YD-A9TA-06 14 37180573 37180573 C T SLC25A21 Missense_Mutation p.V185I 0.44 tolerated(0.69) benign(0.052) TCGA-YD-A9TA-06 14 38061585 38061585 T C FOXA1 Missense_Mutation p.N135S 0.17 tolerated(0.38) benign(0.03) TCGA-YD-A9TA-06 14 38296431 38296431 C T TTC6 Missense_Mutation p.R1720C 0.45 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 14 42355906 42355906 T A LRFN5 Nonsense_Mutation p.C26* 0.32 TCGA-YD-A9TA-06 14 42356424 42356424 G A LRFN5 Missense_Mutation p.R199Q 0.32 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 14 42373465 42373465 G A LRFN5 3'UTR 0.15 TCGA-YD-A9TA-06 14 44975941 44975941 C T FSCB Missense_Mutation p.E84K 0.33 deleterious(0) possibly_damaging(0.777) TCGA-YD-A9TA-06 14 47311181 47311181 G A MDGA2 Missense_Mutation p.L1011F 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.55) TCGA-YD-A9TA-06 14 47311219 47311219 G A MDGA2 Missense_Mutation p.S998F 0.45 tolerated_low_confidence(0.05) benign(0.037) TCGA-YD-A9TA-06 14 50909518 50909518 G A MAP4K5 Missense_Mutation p.S499L 0.36 deleterious(0) possibly_damaging(0.543) TCGA-YD-A9TA-06 14 52466434 52466434 C T C14orf166 Missense_Mutation p.P128S 0.35 tolerated(0.12) probably_damaging(0.938) TCGA-YD-A9TA-06 14 55310730 55310730 G A GCH1 3'UTR 0.12 TCGA-YD-A9TA-06 14 55477124 55477124 G A WDHD1 Missense_Mutation p.P82S 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-YD-A9TA-06 14 55818232 55818232 C T FBXO34 Missense_Mutation p.P375L 0.24 tolerated(0.09) benign(0.03) TCGA-YD-A9TA-06 14 57749840 57749840 C T AP5M1 Silent p.F395F 0.28 TCGA-YD-A9TA-06 14 58471348 58471348 G A C14orf37 3'UTR 0.27 TCGA-YD-A9TA-06 14 58605869 58605869 C T C14orf37 Missense_Mutation p.V70I 0.30 tolerated(0.23) benign(0.198) TCGA-YD-A9TA-06 14 59112933 59112933 C T DACT1 Missense_Mutation p.P531L 0.34 tolerated(0.15) benign(0.108) TCGA-YD-A9TA-06 14 59789660 59789660 T C DAAM1 Missense_Mutation p.F164S 0.35 deleterious(0) unknown(0) TCGA-YD-A9TA-06 14 60581473 60581473 T G PCNXL4 Missense_Mutation p.F15V 0.33 deleterious(0) probably_damaging(0.946) TCGA-YD-A9TA-06 14 60581474 60581474 T G PCNXL4 Missense_Mutation p.F15C 0.32 tolerated(0.06) possibly_damaging(0.708) TCGA-YD-A9TA-06 14 60585322 60585322 C T PCNXL4 Silent p.A384A 0.17 TCGA-YD-A9TA-06 14 60925443 60925443 C G C14orf39 Missense_Mutation p.D378H 0.23 deleterious(0) possibly_damaging(0.476) TCGA-YD-A9TA-06 14 61504377 61504377 C T SLC38A6 Silent p.F200F 0.32 TCGA-YD-A9TA-06 14 61746845 61746845 G A TMEM30B Missense_Mutation p.R341C 0.42 deleterious(0) probably_damaging(0.939) TCGA-YD-A9TA-06 14 62462985 62462985 C T SYT16 Missense_Mutation p.S83F 0.37 tolerated_low_confidence(0.14) benign(0.003) TCGA-YD-A9TA-06 14 63174909 63174909 G A KCNH5 Nonsense_Mutation p.Q762* 0.39 TCGA-YD-A9TA-06 14 63447722 63447722 G A KCNH5 Silent p.F270F 0.31 TCGA-YD-A9TA-06 14 63784481 63784481 C T GPHB5 RNA 0.37 TCGA-YD-A9TA-06 14 64749663 64749663 G A ESR2 Missense_Mutation p.S14F 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-YD-A9TA-06 14 65208000 65208000 G C PLEKHG3 Missense_Mutation p.E533Q 0.39 tolerated(0.09) benign(0.292) TCGA-YD-A9TA-06 14 65209707 65209707 G A PLEKHG3 Silent p.R926R 0.41 TCGA-YD-A9TA-06 14 66188549 66188549 C T FUT8 Missense_Mutation p.H298Y 0.28 tolerated(0.83) benign(0.004) TCGA-YD-A9TA-06 14 67787833 67787833 C T MPP5 Missense_Mutation p.R533W 0.34 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 14 67787968 67787968 C T MPP5 Missense_Mutation p.R578C 0.19 deleterious(0) possibly_damaging(0.606) TCGA-YD-A9TA-06 14 67817364 67817364 G - ATP6V1D Frame_Shift_Del p.S68Yfs*2 0.22 TCGA-YD-A9TA-06 14 68191190 68191190 G A RDH12 Silent p.R23R 0.27 TCGA-YD-A9TA-06 14 68191207 68191207 G A RDH12 Missense_Mutation p.G29E 0.32 deleterious(0.04) probably_damaging(1) TCGA-YD-A9TA-06 14 68251126 68251126 G A ZFYVE26 Missense_Mutation p.P1184L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 14 69256392 69256392 G A ZFP36L1 Missense_Mutation p.P292L 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-YD-A9TA-06 14 69697274 69697274 C T EXD2 Missense_Mutation p.R226C 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-YD-A9TA-06 14 69814673 69814673 G A GALNT16 Missense_Mutation p.G498E 0.34 deleterious(0.01) probably_damaging(0.983) TCGA-YD-A9TA-06 14 69908916 69908916 C T SLC39A9 Silent p.L112L 0.42 TCGA-YD-A9TA-06 14 70477600 70477600 C T SMOC1 Missense_Mutation p.S265F 0.53 deleterious(0.03) probably_damaging(0.943) TCGA-YD-A9TA-06 14 70478270 70478270 A C SMOC1 Missense_Mutation p.D309A 0.52 tolerated(0.18) benign(0.001) TCGA-YD-A9TA-06 14 70633621 70633621 G A SLC8A3 Missense_Mutation p.P507S 0.43 tolerated(0.4) benign(0.001) TCGA-YD-A9TA-06 14 70634264 70634264 C T SLC8A3 Missense_Mutation p.M292I 0.25 tolerated(0.29) benign(0.001) TCGA-YD-A9TA-06 14 70634566 70634566 C T SLC8A3 Missense_Mutation p.G192R 0.24 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 14 70713070 70713070 C T ADAM21P1 RNA 0.64 TCGA-YD-A9TA-06 14 70713380 70713380 G A ADAM21P1 RNA 0.33 TCGA-YD-A9TA-06 14 70839666 70839666 G A SYNJ2BP 3'UTR 0.58 TCGA-YD-A9TA-06 14 70989374 70989374 G A ADAM20 Missense_Mutation p.P751S 0.48 tolerated(0.43) benign(0.034) TCGA-YD-A9TA-06 14 71197231 71197231 G C MAP3K9 Missense_Mutation p.P1075A 0.69 tolerated(0.11) benign(0.423) TCGA-YD-A9TA-06 14 71227850 71227850 C T MAP3K9 Silent p.L290L 0.45 TCGA-YD-A9TA-06 14 71555960 71555960 C T PCNX Silent p.F1830F 0.52 TCGA-YD-A9TA-06 14 73962071 73962071 C T HEATR4 Silent p.K882K 0.64 TCGA-YD-A9TA-06 14 73980789 73980789 C T HEATR4 Missense_Mutation p.E454K 0.52 tolerated(0.16) benign(0.098) TCGA-YD-A9TA-06 14 74206321 74206321 G A ELMSAN1 Missense_Mutation p.H131Y 0.23 deleterious_low_confidence(0.02) benign(0.15) TCGA-YD-A9TA-06 14 74206322 74206322 G A ELMSAN1 Silent p.P130P 0.23 TCGA-YD-A9TA-06 14 74370714 74370714 C T ZNF410 Missense_Mutation p.P228L 0.20 deleterious(0.01) benign(0.003) TCGA-YD-A9TA-06 14 74711917 74711917 G A VSX2 Missense_Mutation p.E169K 0.26 deleterious(0) possibly_damaging(0.541) TCGA-YD-A9TA-06 14 74989558 74989558 G A LTBP2 Missense_Mutation p.P865L 0.67 tolerated(0.07) probably_damaging(1) TCGA-YD-A9TA-06 14 75070379 75070379 G A LTBP2 Missense_Mutation p.P175L 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 14 75070380 75070380 G A LTBP2 Missense_Mutation p.P175S 0.36 tolerated(0.86) probably_damaging(0.998) TCGA-YD-A9TA-06 14 75747567 75747567 T G FOS Missense_Mutation p.F195V 0.42 deleterious(0.04) probably_damaging(0.964) TCGA-YD-A9TA-06 14 76249652 76249652 C T TTLL5 Missense_Mutation p.P922L 0.24 deleterious(0) benign(0.002) TCGA-YD-A9TA-06 14 77709321 77709321 C T TMEM63C Silent p.F421F 0.57 TCGA-YD-A9TA-06 14 77714738 77714738 C T TMEM63C Silent p.I550I 0.45 TCGA-YD-A9TA-06 14 77750178 77750178 G A POMT2 Missense_Mutation p.P539S 0.19 tolerated(0.32) benign(0.001) TCGA-YD-A9TA-06 14 77751346 77751346 A C POMT2 Missense_Mutation p.L508R 0.22 tolerated(0.06) benign(0.285) TCGA-YD-A9TA-06 14 77942456 77942456 C T ISM2 Splice_Site p.X400_splice 0.53 TCGA-YD-A9TA-06 14 77948894 77948894 G A ISM2 Silent p.F248F 0.18 TCGA-YD-A9TA-06 14 81534596 81534596 A C TSHR Splice_Site p.X81_splice 0.13 TCGA-YD-A9TA-06 14 81610554 81610554 G A TSHR Missense_Mutation p.D718N 0.41 tolerated(0.1) benign(0.085) TCGA-YD-A9TA-06 14 81610608 81610608 G A TSHR Missense_Mutation p.E736K 0.41 tolerated(0.08) benign(0.062) TCGA-YD-A9TA-06 14 81651958 81651958 G A GTF2A1 Missense_Mutation p.L314F 0.31 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 14 88450860 88450860 G A GALC Missense_Mutation p.P154S 0.18 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 14 88450861 88450861 G A GALC Silent p.F153F 0.17 TCGA-YD-A9TA-06 14 88737123 88737123 C T KCNK10 Intron 0.19 TCGA-YD-A9TA-06 14 88893033 88893033 C T SPATA7 Missense_Mutation p.T277I 0.43 deleterious(0) probably_damaging(0.969) TCGA-YD-A9TA-06 14 89042221 89042221 C T ZC3H14 Silent p.L354L 0.18 TCGA-YD-A9TA-06 14 89212546 89212546 G A EML5 Missense_Mutation p.P147S 0.43 tolerated(0.9) benign(0.004) TCGA-YD-A9TA-06 14 89220890 89220890 C T EML5 Missense_Mutation p.G108D 0.15 tolerated(0.06) probably_damaging(1) TCGA-YD-A9TA-06 14 90458276 90458276 C T TDP1 Missense_Mutation p.P461L 0.18 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 14 91252626 91252626 G A TTC7B Silent p.Y56Y 0.44 TCGA-YD-A9TA-06 14 91763677 91763677 G A CCDC88C Missense_Mutation p.S1313L 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A9TA-06 14 91772121 91772121 G A CCDC88C Silent p.T1115T 0.28 TCGA-YD-A9TA-06 14 91772122 91772122 G A CCDC88C Missense_Mutation p.T1115I 0.30 deleterious(0) probably_damaging(0.928) TCGA-YD-A9TA-06 14 92076965 92076965 C T CATSPERB Silent p.T819T 0.25 TCGA-YD-A9TA-06 14 93708918 93708918 G A BTBD7 Missense_Mutation p.P1034S 0.19 tolerated_low_confidence(0.29) benign(0.002) TCGA-YD-A9TA-06 14 94004551 94004551 G A UNC79 Missense_Mutation p.E270K 0.60 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 14 94063840 94063840 C T UNC79 Missense_Mutation p.T932I 0.60 tolerated(0.05) probably_damaging(0.998) TCGA-YD-A9TA-06 14 94083493 94083493 G A UNC79 Missense_Mutation p.G1179E 0.51 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 14 94083507 94083507 C T UNC79 Missense_Mutation p.P1184S 0.49 tolerated(0.08) probably_damaging(0.999) TCGA-YD-A9TA-06 14 94770800 94770800 G A SERPINA6 Silent p.F391F 0.54 TCGA-YD-A9TA-06 14 94776159 94776159 G A SERPINA6 Silent p.I266I 0.14 TCGA-YD-A9TA-06 14 95053786 95053786 G A SERPINA5 Silent p.K29K 0.44 TCGA-YD-A9TA-06 14 95056413 95056413 C T SERPINA5 Nonsense_Mutation p.Q219* 0.14 TCGA-YD-A9TA-06 14 95058546 95058546 C T SERPINA5 Silent p.I397I 0.25 TCGA-YD-A9TA-06 14 95090185 95090185 G A SERPINA3 3'UTR 0.36 TCGA-YD-A9TA-06 14 95942170 95942170 G A SYNE3 5'UTR 0.25 TCGA-YD-A9TA-06 14 96129885 96129885 C T TCL6 RNA 0.43 TCGA-YD-A9TA-06 14 96135931 96135931 G A TCL6 RNA 0.58 TCGA-YD-A9TA-06 14 96136844 96136844 C T TCL6 RNA 0.28 TCGA-YD-A9TA-06 14 96157628 96157628 C T TCL1B Silent p.V119V 0.29 TCGA-YD-A9TA-06 15 100332584 100332584 G A AC090825.1 RNA 0.16 TCGA-YD-A9TA-06 15 100345128 100345128 G A CTD-2054N24.2 5'Flank 0.33 TCGA-YD-A9TA-06 15 101152458 101152458 C T ASB7 Nonsense_Mutation p.Q13* 0.75 TCGA-YD-A9TA-06 15 101434049 101434049 C T ALDH1A3 Intron 0.09 TCGA-YD-A9TA-06 15 101862763 101862763 A C PCSK6 Missense_Mutation p.D808E 0.10 tolerated(0.23) benign(0.138) TCGA-YD-A9TA-06 15 22368561 22368561 G C OR4M2 5'UTR 0.28 TCGA-YD-A9TA-06 15 22369236 22369236 C T OR4M2 Missense_Mutation p.L221F 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 22382574 22382574 C T OR4N4 Silent p.F34F 0.35 TCGA-YD-A9TA-06 15 22473170 22473170 G A IGHV4OR15-8 Missense_Mutation p.S34L 0.32 deleterious(0.04) benign(0.143) TCGA-YD-A9TA-06 15 24922862 24922862 G A NPAP1 Silent p.K616K 0.46 TCGA-YD-A9TA-06 15 24923405 24923405 C T NPAP1 Silent p.I797I 0.37 TCGA-YD-A9TA-06 15 25326488 25326488 G A SNORD116-15 RNA 0.36 TCGA-YD-A9TA-06 15 25336784 25336784 C T SNORD116-23 5'Flank 0.32 TCGA-YD-A9TA-06 15 25423891 25423891 A C SNORD115-5 RNA 0.42 TCGA-YD-A9TA-06 15 25463841 25463841 G A SNORD115-27 5'Flank 0.37 TCGA-YD-A9TA-06 15 25479453 25479453 T C SNORD115-35 RNA 0.09 TCGA-YD-A9TA-06 15 28116337 28116337 G A OCA2 Missense_Mutation p.S736L 0.32 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 32928998 32928998 C T ARHGAP11A Missense_Mutation p.S675L 0.36 tolerated(0.31) benign(0.012) TCGA-YD-A9TA-06 15 33939625 33939625 G A RYR3 Silent p.R1314R 0.44 TCGA-YD-A9TA-06 15 33945033 33945033 G A RYR3 Missense_Mutation p.M1419I 0.35 benign(0.027) TCGA-YD-A9TA-06 15 33955054 33955054 G A RYR3 Missense_Mutation p.E1775K 0.34 benign(0.013) TCGA-YD-A9TA-06 15 34520728 34520728 C A EMC4 Missense_Mutation p.Q152K 0.10 deleterious(0.05) possibly_damaging(0.777) TCGA-YD-A9TA-06 15 34549972 34549972 G A SLC12A6 Silent p.T187T 0.28 TCGA-YD-A9TA-06 15 35045232 35045250 CCCCCACCACTGCCCCCAC - GJD2 Frame_Shift_Del p.G132Afs*13 0.25 TCGA-YD-A9TA-06 15 35086910 35086910 G A ACTC1 Missense_Mutation p.P34S 0.42 deleterious_low_confidence(0.03) benign(0.236) TCGA-YD-A9TA-06 15 37110277 37110277 C T CSNK1A1P1 RNA 0.53 TCGA-YD-A9TA-06 15 39544600 39544600 C T C15orf54 Silent p.S88S 0.46 TCGA-YD-A9TA-06 15 39886324 39886324 C T THBS1 Missense_Mutation p.R1098C 0.25 deleterious(0) probably_damaging(0.941) TCGA-YD-A9TA-06 15 40093420 40093420 G A GPR176 Silent p.I487I 0.33 TCGA-YD-A9TA-06 15 40462282 40462282 C T BUB1B Nonsense_Mutation p.R67* 0.35 TCGA-YD-A9TA-06 15 40586519 40586519 G A PLCB2 Missense_Mutation p.P670L 0.34 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 15 40627295 40627295 G A C15orf52 3'UTR 0.41 TCGA-YD-A9TA-06 15 40627417 40627417 C T C15orf52 Missense_Mutation p.R516K 0.37 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TA-06 15 40661813 40661813 C T DISP2 Missense_Mutation p.P1167L 0.41 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 40751469 40751469 C T BAHD1 Missense_Mutation p.A269V 0.35 tolerated(0.39) benign(0.01) TCGA-YD-A9TA-06 15 40864011 40864011 G A RPUSD2 Missense_Mutation p.R272Q 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 41488158 41488158 C T EXD1 Missense_Mutation p.M146I 0.46 tolerated(0.07) benign(0.033) TCGA-YD-A9TA-06 15 41643260 41643260 C T NUSAP1 Silent p.L127L 0.50 TCGA-YD-A9TA-06 15 41795370 41795370 G A ITPKA 3'UTR 0.48 TCGA-YD-A9TA-06 15 41865900 41865900 G A TYRO3 Nonsense_Mutation p.W723* 0.08 TCGA-YD-A9TA-06 15 42104279 42104279 C T MAPKBP1 Missense_Mutation p.S151F 0.46 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 15 42104304 42104304 C T MAPKBP1 Silent p.I159I 0.36 TCGA-YD-A9TA-06 15 42113917 42113917 G A MAPKBP1 Missense_Mutation p.E958K 0.32 tolerated(0.06) possibly_damaging(0.77) TCGA-YD-A9TA-06 15 42170689 42170689 G A SPTBN5 Silent p.F1107F 0.40 TCGA-YD-A9TA-06 15 42375937 42375937 G - PLA2G4D Frame_Shift_Del p.T171Kfs*19 0.28 TCGA-YD-A9TA-06 15 42436745 42436745 G A PLA2G4F Silent p.F626F 0.26 TCGA-YD-A9TA-06 15 43317141 43317141 G A UBR1 Silent p.F875F 0.37 TCGA-YD-A9TA-06 15 43939564 43939564 G A CATSPER2 Silent p.L83L 0.55 TCGA-YD-A9TA-06 15 44180464 44180464 C T FRMD5 Missense_Mutation p.E265K 0.23 tolerated(0.3) possibly_damaging(0.527) TCGA-YD-A9TA-06 15 45394188 45394188 C T DUOX2 Splice_Site p.X885_splice 0.16 TCGA-YD-A9TA-06 15 45437138 45437138 A T DUOX1 Missense_Mutation p.N728Y 0.22 tolerated(0.09) benign(0.006) TCGA-YD-A9TA-06 15 45439728 45439728 T A DUOX1 Missense_Mutation p.F807Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 15 45545488 45545488 G A SLC28A2 Silent p.E25E 0.43 TCGA-YD-A9TA-06 15 48559883 48559883 C T SLC12A1 Silent p.V760V 0.42 TCGA-YD-A9TA-06 15 49076185 49076185 G T CEP152 Missense_Mutation p.H436N 0.45 tolerated(1) benign(0.002) TCGA-YD-A9TA-06 15 49118077 49118077 A G SHC4 3'UTR 0.20 TCGA-YD-A9TA-06 15 49255240 49255240 T G SHC4 5'UTR 0.28 TCGA-YD-A9TA-06 15 50549702 50549702 C T HDC Missense_Mutation p.D121N 0.49 tolerated(0.17) probably_damaging(1) TCGA-YD-A9TA-06 15 51291414 51291414 C T AP4E1 Missense_Mutation p.A1017V 0.23 tolerated(0.76) benign(0.001) TCGA-YD-A9TA-06 15 52500811 52500811 G A MYO5C Silent p.S1442S 0.20 TCGA-YD-A9TA-06 15 52513447 52513447 G A MYO5C Silent p.I1211I 0.41 TCGA-YD-A9TA-06 15 52903782 52903782 C T FAM214A Missense_Mutation p.V132I 0.42 deleterious(0.04) benign(0.168) TCGA-YD-A9TA-06 15 53049727 53049727 G A ONECUT1 3'UTR 0.22 TCGA-YD-A9TA-06 15 53081455 53081455 G A ONECUT1 Silent p.T209T 0.47 TCGA-YD-A9TA-06 15 53081456 53081456 G A ONECUT1 Missense_Mutation p.T209I 0.47 tolerated(0.11) benign(0.017) TCGA-YD-A9TA-06 15 53992082 53992082 G A WDR72 Missense_Mutation p.L544F 0.26 deleterious(0.03) possibly_damaging(0.728) TCGA-YD-A9TA-06 15 53998154 53998154 G A WDR72 Missense_Mutation p.P358S 0.48 tolerated(0.15) probably_damaging(0.973) TCGA-YD-A9TA-06 15 54586108 54586108 C T UNC13C Silent p.S1278S 0.42 TCGA-YD-A9TA-06 15 54586243 54586243 G A UNC13C Missense_Mutation p.M1323I 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.813) TCGA-YD-A9TA-06 15 54793067 54793067 G T UNC13C Missense_Mutation p.C1731F 0.25 deleterious_low_confidence(0.02) benign(0.309) TCGA-YD-A9TA-06 15 54793068 54793068 C T UNC13C Silent p.C1731C 0.27 TCGA-YD-A9TA-06 15 55669185 55669185 G A CCPG1 Missense_Mutation p.S139F 0.58 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 55916604 55916604 C T PRTG Missense_Mutation p.G1010E 0.47 tolerated(1) benign(0.003) TCGA-YD-A9TA-06 15 56207630 56207630 G A NEDD4 Missense_Mutation p.S467F 0.49 deleterious_low_confidence(0.04) benign(0.444) TCGA-YD-A9TA-06 15 56657754 56657754 G A TEX9 Intron 0.42 TCGA-YD-A9TA-06 15 57731148 57731148 G A CGNL1 Silent p.Q317Q 0.26 TCGA-YD-A9TA-06 15 58253454 58253454 C T ALDH1A2 Silent p.T430T 0.59 TCGA-YD-A9TA-06 15 62325707 62325707 G A VPS13C Silent p.S106S 0.20 TCGA-YD-A9TA-06 15 62944245 62944245 C T TLN2 Silent p.I92I 0.52 TCGA-YD-A9TA-06 15 62948196 62948196 G A TLN2 Missense_Mutation p.E191K 0.61 deleterious(0) possibly_damaging(0.794) TCGA-YD-A9TA-06 15 63597812 63597812 G C APH1B Splice_Site p.X203_splice 0.40 TCGA-YD-A9TA-06 15 63904534 63904534 G A HERC1 Silent p.F4772F 0.19 TCGA-YD-A9TA-06 15 63935683 63935683 G - HERC1 Frame_Shift_Del p.R3751Gfs*17 0.31 TCGA-YD-A9TA-06 15 63964805 63964805 G A HERC1 Silent p.S2645S 0.42 TCGA-YD-A9TA-06 15 64011081 64011081 G A HERC1 Missense_Mutation p.T1253I 0.37 benign(0.009) TCGA-YD-A9TA-06 15 64449003 64449003 G A PPIB Missense_Mutation p.S150F 0.26 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TA-06 15 65369988 65369988 G A KBTBD13 Missense_Mutation p.D279N 0.44 tolerated(0.61) benign(0.172) TCGA-YD-A9TA-06 15 65685746 65685746 G A IGDCC4 Missense_Mutation p.S613F 0.24 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 65772665 65772665 G A DPP8 Silent p.I413I 0.40 TCGA-YD-A9TA-06 15 66856251 66856251 C T LCTL Missense_Mutation p.R123Q 0.22 deleterious(0.04) benign(0.354) TCGA-YD-A9TA-06 15 67073544 67073544 G A SMAD6 Missense_Mutation p.G388S 0.47 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 15 67073615 67073615 C T SMAD6 Silent p.F411F 0.33 TCGA-YD-A9TA-06 15 71548981 71548981 G A THSD4 Silent p.R314R 0.51 TCGA-YD-A9TA-06 15 72454235 72454235 C T GRAMD2 3'UTR 0.50 TCGA-YD-A9TA-06 15 72534247 72534247 G A PARP6 Silent p.F595F 0.28 TCGA-YD-A9TA-06 15 72580686 72580686 G A CELF6 Silent p.V427V 0.18 TCGA-YD-A9TA-06 15 72699505 72699505 T A TMEM202 Missense_Mutation p.L189H 0.49 deleterious(0) possibly_damaging(0.629) TCGA-YD-A9TA-06 15 72699506 72699506 C T TMEM202 Silent p.L189L 0.47 TCGA-YD-A9TA-06 15 74290705 74290705 C T PML Missense_Mutation p.R164W 0.50 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 15 74363311 74363311 G A GOLGA6A Silent p.P674P 0.11 TCGA-YD-A9TA-06 15 74426160 74426160 C T ISLR2 Silent p.C355C 0.24 TCGA-YD-A9TA-06 15 74628336 74628336 C T CCDC33 Missense_Mutation p.S737F 0.18 deleterious_low_confidence(0.02) benign(0.011) TCGA-YD-A9TA-06 15 74654502 74654502 C T CYP11A1 Intron 0.38 TCGA-YD-A9TA-06 15 75188542 75188542 G A MPI Silent p.Q240Q 0.22 TCGA-YD-A9TA-06 15 75503285 75503285 C T C15orf39 Missense_Mutation p.P991L 0.50 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-YD-A9TA-06 15 75676761 75676761 A C SIN3A Missense_Mutation p.S1013R 0.33 deleterious(0) possibly_damaging(0.463) TCGA-YD-A9TA-06 15 76508792 76508792 G A ETFA 3'UTR 0.56 TCGA-YD-A9TA-06 15 76508932 76508932 G A ETFA Missense_Mutation p.P324S 0.28 deleterious(0) benign(0.187) TCGA-YD-A9TA-06 15 77087744 77087744 G A SCAPER Missense_Mutation p.P217S 0.61 tolerated(0.59) benign(0.003) TCGA-YD-A9TA-06 15 78346406 78346406 G A TBC1D2B Missense_Mutation p.P162S 0.26 tolerated(0.44) benign(0.001) TCGA-YD-A9TA-06 15 78786251 78786251 C T IREB2 Silent p.G775G 0.38 TCGA-YD-A9TA-06 15 78825987 78825987 C T HYKK Missense_Mutation p.S366F 0.44 deleterious(0.01) possibly_damaging(0.707) TCGA-YD-A9TA-06 15 78882496 78882496 T C CHRNA5 Silent p.L255L 0.50 TCGA-YD-A9TA-06 15 78894591 78894591 G A CHRNA3 Silent p.F131F 0.49 TCGA-YD-A9TA-06 15 78917411 78917411 G A CHRNB4 3'UTR 0.25 TCGA-YD-A9TA-06 15 79058615 79058615 C T ADAMTS7 Missense_Mutation p.R1213K 0.15 tolerated(0.43) benign(0.004) TCGA-YD-A9TA-06 15 80743303 80743303 C T ARNT2 Silent p.A38A 0.48 TCGA-YD-A9TA-06 15 81571994 81571994 C T IL16 Silent p.S320S 0.63 TCGA-YD-A9TA-06 15 81591926 81591926 C T IL16 Silent p.H753H 0.56 TCGA-YD-A9TA-06 15 81592697 81592697 C T IL16 Silent p.S1010S 0.12 TCGA-YD-A9TA-06 15 81636270 81636270 C T TMC3 Silent p.L545L 0.59 TCGA-YD-A9TA-06 15 81641888 81641888 G A TMC3 Silent p.L368L 0.31 TCGA-YD-A9TA-06 15 82336196 82336196 C T MEX3B Missense_Mutation p.G339R 0.18 deleterious(0.01) benign(0.1) TCGA-YD-A9TA-06 15 82512025 82512025 G A EFTUD1 Missense_Mutation p.P527S 0.51 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 15 83350314 83350314 G A AP3B2 Missense_Mutation p.R127C 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 15 83933489 83933489 G A BNC1 Missense_Mutation p.R172C 0.21 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 15 84237318 84237318 G A SH3GL3 Silent p.S75S 0.70 TCGA-YD-A9TA-06 15 84241366 84241366 G A SH3GL3 Silent p.V127V 0.22 TCGA-YD-A9TA-06 15 85607630 85607630 C T PDE8A Silent p.P72P 0.11 TCGA-YD-A9TA-06 15 86312057 86312057 G C KLHL25 Missense_Mutation p.P329A 0.45 tolerated(0.21) benign(0.306) TCGA-YD-A9TA-06 15 87089350 87089350 G A AGBL1 Missense_Mutation p.E889K 0.17 deleterious(0) benign(0.001) TCGA-YD-A9TA-06 15 87099487 87099487 G A AGBL1 Missense_Mutation p.E964K 0.27 tolerated_low_confidence(0.41) benign(0.011) TCGA-YD-A9TA-06 15 89388841 89388841 G A ACAN Missense_Mutation p.R386Q 0.28 tolerated(0.12) unknown(0) TCGA-YD-A9TA-06 15 89400455 89400455 G A ACAN Missense_Mutation p.G1547R 0.20 deleterious(0) benign(0.348) TCGA-YD-A9TA-06 15 89400651 89400651 G A ACAN Missense_Mutation p.G1612E 0.66 tolerated(0.13) benign(0.348) TCGA-YD-A9TA-06 15 89402405 89402405 G A ACAN Missense_Mutation p.E2197K 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-YD-A9TA-06 15 90760691 90760691 C T SEMA4B Missense_Mutation p.L60F 0.48 tolerated(0.33) benign(0.022) TCGA-YD-A9TA-06 15 90809060 90809060 C T NGRN Missense_Mutation p.P39L 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.573) TCGA-YD-A9TA-06 15 91428754 91428754 G A FES Missense_Mutation p.R109Q 0.41 tolerated(0.06) benign(0.069) TCGA-YD-A9TA-06 15 91428755 91428755 G A FES Silent p.R109R 0.39 TCGA-YD-A9TA-06 15 91795186 91795186 G A SV2B Missense_Mutation p.G197R 0.37 deleterious(0) probably_damaging(0.966) TCGA-YD-A9TA-06 15 91811717 91811717 C T SV2B Nonsense_Mutation p.Q419* 0.14 TCGA-YD-A9TA-06 15 93007607 93007607 G A ST8SIA2 Missense_Mutation p.A374T 0.14 benign(0.101) TCGA-YD-A9TA-06 15 93547903 93547903 C T CHD2 Silent p.V1445V 0.19 TCGA-YD-A9TA-06 15 99023896 99023896 C T FAM169B Silent p.V39V 0.75 TCGA-YD-A9TA-06 15 99440018 99440019 - GAA IGF1R In_Frame_Ins p.K330dup 0.69 TCGA-YD-A9TA-06 15 99472803 99472803 C T IGF1R Silent p.F933F 0.69 TCGA-YD-A9TA-06 16 10031958 10031958 C T GRIN2A Missense_Mutation p.E289K 0.29 tolerated(0.06) benign(0.243) TCGA-YD-A9TA-06 16 10989236 10989236 C G CIITA Missense_Mutation p.F50L 0.47 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 16 11145396 11145396 C T CLEC16A Silent p.L631L 0.38 TCGA-YD-A9TA-06 16 11272247 11272247 C T CLEC16A Silent p.I954I 0.36 TCGA-YD-A9TA-06 16 1270775 1270775 C T CACNA1H Silent p.F2281F 0.43 TCGA-YD-A9TA-06 16 12875223 12875223 G A CPPED1 Silent p.I36I 0.39 TCGA-YD-A9TA-06 16 129657 129657 C T MPG Silent p.F91F 0.33 TCGA-YD-A9TA-06 16 14345755 14345755 C T MKL2 Missense_Mutation p.P764S 0.21 tolerated(0.44) benign(0.019) TCGA-YD-A9TA-06 16 14989953 14989953 C T NOMO1 3'UTR 0.22 TCGA-YD-A9TA-06 16 1509144 1509144 G A CLCN7 Silent p.L213L 0.42 TCGA-YD-A9TA-06 16 1555599 1555599 C T TELO2 Silent p.S677S 0.52 TCGA-YD-A9TA-06 16 15872684 15872684 A T MYH11 Missense_Mutation p.I255N 0.63 probably_damaging(0.992) TCGA-YD-A9TA-06 16 15917131 15917131 G A MYH11 Silent p.A161A 0.17 TCGA-YD-A9TA-06 16 15931873 15931873 C T MYH11 Missense_Mutation p.M79I 0.46 possibly_damaging(0.854) TCGA-YD-A9TA-06 16 15978006 15978006 G A FOPNL Nonsense_Mutation p.R29* 0.18 TCGA-YD-A9TA-06 16 16244589 16244589 G A ABCC6 Missense_Mutation p.L1417F 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 16 16315466 16315466 G A ABCC6 Intron 0.43 TCGA-YD-A9TA-06 16 19041621 19041621 G A TMC7 Missense_Mutation p.D263N 0.23 tolerated(1) benign(0.003) TCGA-YD-A9TA-06 16 19041664 19041664 C A TMC7 Missense_Mutation p.A277D 0.13 tolerated(0.07) benign(0.008) TCGA-YD-A9TA-06 16 19451880 19451880 G A TMC5 Missense_Mutation p.G174R 0.45 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-YD-A9TA-06 16 19498529 19498529 G A TMC5 Missense_Mutation p.M818I 0.18 deleterious(0) benign(0.291) TCGA-YD-A9TA-06 16 19501864 19501864 C T TMC5 Silent p.F907F 0.50 TCGA-YD-A9TA-06 16 20043942 20043942 C T GPR139 Silent p.Q59Q 0.24 TCGA-YD-A9TA-06 16 20335515 20335515 G A GP2 Missense_Mutation p.T53I 0.19 tolerated(0.11) benign(0.062) TCGA-YD-A9TA-06 16 20370737 20370737 C T PDILT Silent p.G553G 0.22 TCGA-YD-A9TA-06 16 20371964 20371964 C T PDILT Missense_Mutation p.G478R 0.54 tolerated(0.09) probably_damaging(1) TCGA-YD-A9TA-06 16 20373766 20373766 C T PDILT Missense_Mutation p.R459Q 0.29 tolerated(0.13) benign(0.041) TCGA-YD-A9TA-06 16 20451758 20451758 C T ACSM5 3'UTR 0.34 TCGA-YD-A9TA-06 16 20476941 20476941 G A ACSM2A Missense_Mutation p.A94T 0.24 deleterious(0) probably_damaging(0.935) TCGA-YD-A9TA-06 16 20486734 20486734 C T ACSM2A Silent p.Y315Y 0.60 TCGA-YD-A9TA-06 16 20491916 20491916 G A ACSM2A Missense_Mutation p.A435T 0.23 deleterious(0.05) benign(0.358) TCGA-YD-A9TA-06 16 20552078 20552078 C T ACSM2B Silent p.V509V 0.52 TCGA-YD-A9TA-06 16 20673121 20673121 G A ACSM1 Silent p.F329F 0.32 TCGA-YD-A9TA-06 16 21011768 21011768 C T DNAH3 Missense_Mutation p.E2067K 0.53 tolerated(0.58) benign(0.023) TCGA-YD-A9TA-06 16 21049172 21049172 G A DNAH3 Missense_Mutation p.P1621S 0.28 deleterious(0.03) possibly_damaging(0.612) TCGA-YD-A9TA-06 16 21123013 21123013 C T DNAH3 Missense_Mutation p.R678Q 0.43 tolerated(0.12) benign(0.023) TCGA-YD-A9TA-06 16 21152656 21152656 C T DNAH3 Silent p.T162T 0.76 TCGA-YD-A9TA-06 16 2168003 2168003 G A PKD1 Silent p.R330R 0.43 TCGA-YD-A9TA-06 16 21728231 21728231 G A OTOA Missense_Mutation p.V498I 0.53 tolerated(0.52) benign(0.001) TCGA-YD-A9TA-06 16 23079307 23079307 G A USP31 3'UTR 0.47 TCGA-YD-A9TA-06 16 23197755 23197755 C T SCNN1G Missense_Mutation p.L55F 0.50 deleterious(0.05) possibly_damaging(0.609) TCGA-YD-A9TA-06 16 23226413 23226413 G A SCNN1G Missense_Mutation p.E525K 0.18 tolerated(0.06) benign(0.034) TCGA-YD-A9TA-06 16 2326739 2326739 G A ABCA3 Missense_Mutation p.S1684L 0.50 deleterious(0) possibly_damaging(0.886) TCGA-YD-A9TA-06 16 23769008 23769008 C T CHP2 3'UTR 0.63 TCGA-YD-A9TA-06 16 24202527 24202527 C T PRKCB Silent p.I613I 0.15 TCGA-YD-A9TA-06 16 24202528 24202528 C T PRKCB Nonsense_Mutation p.Q614* 0.15 TCGA-YD-A9TA-06 16 24268022 24268022 C T CACNG3 5'UTR 0.38 TCGA-YD-A9TA-06 16 242946 242946 C T LUC7L Silent p.R252R 0.36 TCGA-YD-A9TA-06 16 2503426 2503426 C T CCNF Nonsense_Mutation p.Q535* 0.50 TCGA-YD-A9TA-06 16 2514478 2514478 C T C16orf59 Intron 0.43 TCGA-YD-A9TA-06 16 26147315 26147315 G A HS3ST4 Missense_Mutation p.D373N 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 16 27370259 27370259 C T IL4R Nonsense_Mutation p.Q265* 0.46 TCGA-YD-A9TA-06 16 27777717 27777717 C T KIAA0556 Silent p.I1299I 0.30 TCGA-YD-A9TA-06 16 2813927 2813927 C T SRRM2 Missense_Mutation p.P1133L 0.36 unknown(0) TCGA-YD-A9TA-06 16 2816261 2816261 C T SRRM2 Missense_Mutation p.S1911F 0.41 unknown(0) TCGA-YD-A9TA-06 16 28603313 28603313 C T SULT1A2 3'UTR 0.17 TCGA-YD-A9TA-06 16 2882147 2882147 C T ZG16B Missense_Mutation p.P205L 0.32 tolerated_low_confidence(0.13) benign(0.002) TCGA-YD-A9TA-06 16 28925884 28925884 G A RABEP2 Silent p.S189S 0.39 TCGA-YD-A9TA-06 16 28967323 28967323 C T NFATC2IP Silent p.S201S 0.23 TCGA-YD-A9TA-06 16 28967504 28967504 C T NFATC2IP Missense_Mutation p.S231F 0.31 deleterious(0) probably_damaging(0.962) TCGA-YD-A9TA-06 16 30409930 30409930 C T ZNF48 Silent p.C453C 0.20 TCGA-YD-A9TA-06 16 30518138 30518138 C T ITGAL Silent p.F823F 0.50 TCGA-YD-A9TA-06 16 30536420 30536420 G A ZNF768 Silent p.C347C 0.70 TCGA-YD-A9TA-06 16 3065721 3065721 C T CLDN6 Missense_Mutation p.G101E 0.30 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 16 30732599 30732599 C T SRCAP Missense_Mutation p.R1115C 0.27 unknown(0) TCGA-YD-A9TA-06 16 3075816 3075816 C T THOC6 Silent p.A49A 0.40 TCGA-YD-A9TA-06 16 3080699 3080699 C T CCDC64B Missense_Mutation p.E205K 0.39 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 16 30976109 30976109 C T SETD1A Missense_Mutation p.S349L 0.59 benign(0.017) TCGA-YD-A9TA-06 16 30976538 30976538 T G SETD1A Missense_Mutation p.I492S 0.16 possibly_damaging(0.507) TCGA-YD-A9TA-06 16 31004411 31004411 G A STX1B Intron 0.21 TCGA-YD-A9TA-06 16 31004412 31004412 G A STX1B Intron 0.21 TCGA-YD-A9TA-06 16 31382714 31382714 G A ITGAX Missense_Mutation p.R634K 0.21 tolerated(0.52) probably_damaging(0.99) TCGA-YD-A9TA-06 16 31383063 31383063 C T ITGAX Silent p.L706L 0.63 TCGA-YD-A9TA-06 16 31421815 31421815 G A ITGAD Missense_Mutation p.E395K 0.52 tolerated(0.4) benign(0.03) TCGA-YD-A9TA-06 16 31422180 31422180 C T ITGAD Missense_Mutation p.A446V 0.35 deleterious(0.03) benign(0.417) TCGA-YD-A9TA-06 16 332334 332334 G A ARHGDIG Silent p.L125L 0.43 TCGA-YD-A9TA-06 16 3582910 3582910 C T CLUAP1 Intron 0.54 TCGA-YD-A9TA-06 16 3614279 3614279 C T NLRC3 Missense_Mutation p.G267D 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 16 3900705 3900705 G A CREBBP Missense_Mutation p.P131S 0.40 benign(0.024) TCGA-YD-A9TA-06 16 397045 397045 G A AXIN1 5'UTR 0.20 TCGA-YD-A9TA-06 16 4042269 4042269 G A ADCY9 Silent p.I695I 0.32 TCGA-YD-A9TA-06 16 4254631 4254631 C T SRL Silent p.E22E 0.36 TCGA-YD-A9TA-06 16 46716089 46716089 T A VPS35 Splice_Site p.X35_splice 0.40 TCGA-YD-A9TA-06 16 48250094 48250094 A C ABCC11 Silent p.S294S 0.33 TCGA-YD-A9TA-06 16 49670955 49670955 G A ZNF423 Missense_Mutation p.S703L 0.27 deleterious(0.01) possibly_damaging(0.459) TCGA-YD-A9TA-06 16 5041931 5041931 G A SEC14L5 Silent p.E189E 0.39 TCGA-YD-A9TA-06 16 50741819 50741819 C T NOD2 Silent p.F198F 0.54 TCGA-YD-A9TA-06 16 5094379 5094379 T C C16orf89 3'UTR 0.39 TCGA-YD-A9TA-06 16 51171230 51171230 C T SALL1 Silent p.Q1256Q 0.29 TCGA-YD-A9TA-06 16 51172839 51172839 C T SALL1 Silent p.Q1098Q 0.46 TCGA-YD-A9TA-06 16 51173173 51173173 C T SALL1 Missense_Mutation p.G987E 0.24 tolerated(0.08) benign(0.185) TCGA-YD-A9TA-06 16 52498067 52498067 C T TOX3 Missense_Mutation p.E63K 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-YD-A9TA-06 16 53190296 53190296 C T CHD9 Nonsense_Mutation p.Q99* 0.55 TCGA-YD-A9TA-06 16 55359048 55359048 G A IRX6 Silent p.Q15Q 0.23 TCGA-YD-A9TA-06 16 55518034 55518034 C T MMP2 Missense_Mutation p.H163Y 0.30 tolerated(1) benign(0.079) TCGA-YD-A9TA-06 16 55893585 55893585 G A CES5A Silent p.F339F 0.28 TCGA-YD-A9TA-06 16 55900006 55900006 C T CES5A Missense_Mutation p.G221R 0.46 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 16 56531790 56531790 G A BBS2 Silent p.I554I 0.46 TCGA-YD-A9TA-06 16 56832393 56832393 C T NUP93 Silent p.F101F 0.43 TCGA-YD-A9TA-06 16 57918073 57918073 C T CNGB1 Missense_Mutation p.E1251K 0.22 deleterious_low_confidence(0.03) benign(0) TCGA-YD-A9TA-06 16 57953131 57953131 G A CNGB1 Missense_Mutation p.A610V 0.31 tolerated(0.11) possibly_damaging(0.621) TCGA-YD-A9TA-06 16 58031540 58031540 G A ZNF319 Silent p.P210P 0.54 TCGA-YD-A9TA-06 16 58296421 58296421 C T CCDC113 Silent p.L254L 0.56 TCGA-YD-A9TA-06 16 61687507 61687507 C T CDH8 3'UTR 0.49 TCGA-YD-A9TA-06 16 61891055 61891055 C T CDH8 Missense_Mutation p.G212E 0.55 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 16 64981589 64981589 C T CDH11 Missense_Mutation p.D770N 0.07 tolerated(0.18) probably_damaging(0.999) TCGA-YD-A9TA-06 16 66861971 66861971 G A NAE1 Intron 0.48 TCGA-YD-A9TA-06 16 66949243 66949243 C T CDH16 Missense_Mutation p.E155K 0.18 deleterious(0.03) possibly_damaging(0.744) TCGA-YD-A9TA-06 16 67006297 67006297 C T CES3 Nonsense_Mutation p.R444* 0.47 TCGA-YD-A9TA-06 16 67188665 67188665 C T TRADD Missense_Mutation p.E276K 0.33 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 16 67288927 67288927 C T SLC9A5 Missense_Mutation p.P165L 0.47 tolerated(0.29) benign(0.034) TCGA-YD-A9TA-06 16 67315688 67315688 C T PLEKHG4 Missense_Mutation p.S318L 0.19 tolerated(0.07) benign(0.043) TCGA-YD-A9TA-06 16 67691700 67691700 G A ACD Silent p.P507P 0.41 TCGA-YD-A9TA-06 16 67691701 67691701 G A ACD Missense_Mutation p.P507L 0.41 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 16 67709433 67709433 G A GFOD2 Silent p.V261V 0.36 TCGA-YD-A9TA-06 16 67763270 67763270 G A RANBP10 Missense_Mutation p.S422F 0.27 deleterious(0.02) probably_damaging(0.972) TCGA-YD-A9TA-06 16 67763313 67763313 G A RANBP10 Missense_Mutation p.P408S 0.44 tolerated(0.57) benign(0.053) TCGA-YD-A9TA-06 16 67916226 67916226 C T EDC4 Missense_Mutation p.S1091F 0.17 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 16 67943138 67943138 C T PSKH1 Silent p.F162F 0.45 TCGA-YD-A9TA-06 16 67980188 67980188 G A SLC12A4 Silent p.I833I 0.22 TCGA-YD-A9TA-06 16 68021524 68021524 G A DPEP2 Missense_Mutation p.P449L 0.20 deleterious_low_confidence(0) benign(0.033) TCGA-YD-A9TA-06 16 68265972 68265972 C T ESRP2 Silent p.R344R 0.16 TCGA-YD-A9TA-06 16 68867454 68867454 C T CDH1 3'UTR 0.38 TCGA-YD-A9TA-06 16 69373524 69373524 G A NIP7 5'UTR 0.33 TCGA-YD-A9TA-06 16 70562803 70562803 C T SF3B3 Missense_Mutation p.S33F 0.18 deleterious(0) possibly_damaging(0.775) TCGA-YD-A9TA-06 16 70562804 70562804 C T SF3B3 Silent p.S33S 0.18 TCGA-YD-A9TA-06 16 70573081 70573081 C T SF3B3 Silent p.F346F 0.23 TCGA-YD-A9TA-06 16 70867875 70867875 C T HYDIN Missense_Mutation p.E4532K 0.41 possibly_damaging(0.801) TCGA-YD-A9TA-06 16 70871596 70871596 C T HYDIN Missense_Mutation p.M4413I 0.53 benign(0.216) TCGA-YD-A9TA-06 16 70917976 70917976 G A HYDIN Missense_Mutation p.P3276S 0.33 probably_damaging(0.932) TCGA-YD-A9TA-06 16 70942735 70942735 C T HYDIN Silent p.K2678K 0.21 TCGA-YD-A9TA-06 16 70954652 70954652 C T HYDIN Missense_Mutation p.E2543K 0.60 benign(0.023) TCGA-YD-A9TA-06 16 71015370 71015370 C T HYDIN Silent p.L1478L 0.56 TCGA-YD-A9TA-06 16 71113831 71113831 G A HYDIN Silent p.F565F 0.22 TCGA-YD-A9TA-06 16 71212836 71212836 C T HYDIN Missense_Mutation p.D126N 0.24 probably_damaging(0.954) TCGA-YD-A9TA-06 16 71212872 71212872 C A HYDIN Nonsense_Mutation p.E114* 0.47 TCGA-YD-A9TA-06 16 71570608 71570608 C T CHST4 Silent p.L10L 0.48 TCGA-YD-A9TA-06 16 71571465 71571465 A G CHST4 Silent p.G295G 0.56 TCGA-YD-A9TA-06 16 74339460 74339460 C T PSMD7 Silent p.S268S 0.56 TCGA-YD-A9TA-06 16 74942825 74942825 G A WDR59 Missense_Mutation p.P565S 0.22 tolerated(0.08) benign(0.029) TCGA-YD-A9TA-06 16 75203892 75203892 C T ZFP1 Missense_Mutation p.P295L 0.55 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 16 7645602 7645602 G A RBFOX1 Missense_Mutation p.E194K 0.40 deleterious(0.01) benign(0.084) TCGA-YD-A9TA-06 16 77227534 77227534 T G MON1B Missense_Mutation p.V112G 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-YD-A9TA-06 16 7743364 7743364 C T RBFOX1 Intron 0.35 TCGA-YD-A9TA-06 16 77465311 77465311 C T ADAMTS18 Missense_Mutation p.V126I 0.17 tolerated(0.32) possibly_damaging(0.643) TCGA-YD-A9TA-06 16 7760761 7760761 A C RBFOX1 3'UTR 0.35 TCGA-YD-A9TA-06 16 77775533 77775533 C T NUDT7 Nonsense_Mutation p.Q135* 0.55 TCGA-YD-A9TA-06 16 78064593 78064593 C T CLEC3A Missense_Mutation p.S159F 0.56 deleterious(0.01) possibly_damaging(0.807) TCGA-YD-A9TA-06 16 80577232 80577232 G A DYNLRB2 Missense_Mutation p.M21I 0.48 tolerated(1) benign(0) TCGA-YD-A9TA-06 16 80577233 80577233 G A DYNLRB2 Missense_Mutation p.V22I 0.47 tolerated(0.94) benign(0.096) TCGA-YD-A9TA-06 16 81075941 81075941 C T ATMIN Missense_Mutation p.S173L 0.24 tolerated(0.14) possibly_damaging(0.614) TCGA-YD-A9TA-06 16 81295775 81295775 T G BCMO1 Missense_Mutation p.F120V 0.43 tolerated(0.32) probably_damaging(0.938) TCGA-YD-A9TA-06 16 816174 816174 C T MSLN Silent p.D337D 0.32 TCGA-YD-A9TA-06 16 83711998 83711998 C T CDH13 Silent p.L537L 0.44 TCGA-YD-A9TA-06 16 839654 839654 C T CHTF18 Missense_Mutation p.S182F 0.44 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 16 841285 841285 C T CHTF18 Missense_Mutation p.A340V 0.44 tolerated(0.17) benign(0.03) TCGA-YD-A9TA-06 16 84203596 84203596 G A DNAAF1 Missense_Mutation p.E388K 0.15 deleterious(0.04) benign(0.201) TCGA-YD-A9TA-06 16 84205881 84205881 C T DNAAF1 Missense_Mutation p.A515V 0.64 tolerated(0.34) benign(0.023) TCGA-YD-A9TA-06 16 84213641 84213641 G A TAF1C Missense_Mutation p.P537L 0.15 tolerated(0.13) possibly_damaging(0.885) TCGA-YD-A9TA-06 16 84217072 84217072 G A TAF1C Missense_Mutation p.R88C 0.33 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 16 84230270 84230270 C T ADAD2 Missense_Mutation p.P597L 0.37 deleterious(0) possibly_damaging(0.856) TCGA-YD-A9TA-06 16 85116181 85116181 G C KIAA0513 Missense_Mutation p.G331A 0.19 tolerated(0.16) possibly_damaging(0.728) TCGA-YD-A9TA-06 16 87446314 87446314 C G ZCCHC14 Missense_Mutation p.L534F 0.17 tolerated(0.06) benign(0.346) TCGA-YD-A9TA-06 16 87451274 87451274 G A ZCCHC14 Missense_Mutation p.S255F 0.56 tolerated(0.17) benign(0.341) TCGA-YD-A9TA-06 16 8862081 8862081 C T ABAT Missense_Mutation p.S212F 0.42 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 16 89261440 89261440 C T CDH15 Silent p.A774A 0.67 TCGA-YD-A9TA-06 16 89345633 89345633 G A ANKRD11 Silent p.F2439F 0.38 TCGA-YD-A9TA-06 16 89349449 89349449 A C ANKRD11 Silent p.S1167S 0.46 TCGA-YD-A9TA-06 16 89756958 89756958 C T CDK10 Intron 0.46 TCGA-YD-A9TA-06 16 89776295 89776295 G A VPS9D1 Silent p.T426T 0.20 TCGA-YD-A9TA-06 16 90244293 90244293 C T FAM157C RNA 0.50 TCGA-YD-A9TA-06 16 9857957 9857957 C T GRIN2A Silent p.P1148P 0.38 TCGA-YD-A9TA-06 16 9858517 9858517 C T GRIN2A Missense_Mutation p.E962K 0.39 deleterious(0.02) possibly_damaging(0.642) TCGA-YD-A9TA-06 16 9927968 9927968 C T GRIN2A Missense_Mutation p.G591R 0.39 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 16 9984856 9984856 C T GRIN2A Missense_Mutation p.R370Q 0.34 deleterious(0) probably_damaging(0.916) TCGA-YD-A9TA-06 17 10222255 10222255 C T MYH13 Missense_Mutation p.R1197K 0.68 tolerated(0.16) probably_damaging(0.987) TCGA-YD-A9TA-06 17 10247316 10247316 G A MYH13 Silent p.F565F 0.71 TCGA-YD-A9TA-06 17 10258060 10258060 G A MYH13 Silent p.F314F 0.67 TCGA-YD-A9TA-06 17 10355314 10355314 G A MYH4 Silent p.L1228L 0.71 TCGA-YD-A9TA-06 17 10359856 10359856 C T MYH4 Silent p.K638K 0.23 TCGA-YD-A9TA-06 17 10360965 10360965 C T MYH4 Missense_Mutation p.E557K 0.26 deleterious(0.01) benign(0.007) TCGA-YD-A9TA-06 17 10395847 10395847 C T MYH1 Silent p.R1902R 0.75 TCGA-YD-A9TA-06 17 10412816 10412816 C T MYH1 Missense_Mutation p.E525K 0.72 deleterious(0.03) possibly_damaging(0.559) TCGA-YD-A9TA-06 17 10417346 10417346 A C MYH1 Missense_Mutation p.V210G 0.67 tolerated(0.45) benign(0) TCGA-YD-A9TA-06 17 10433178 10433178 C T MYH2 Missense_Mutation p.E971K 0.64 deleterious(0) possibly_damaging(0.877) TCGA-YD-A9TA-06 17 11583207 11583207 G A DNAH9 Missense_Mutation p.D1163N 0.74 benign(0.033) TCGA-YD-A9TA-06 17 11593058 11593058 G A DNAH9 Missense_Mutation p.D1307N 0.75 probably_damaging(0.987) TCGA-YD-A9TA-06 17 11597312 11597312 G A DNAH9 Missense_Mutation p.G1581D 0.55 benign(0.005) TCGA-YD-A9TA-06 17 11648166 11648166 G A DNAH9 Missense_Mutation p.G2055E 0.76 probably_damaging(1) TCGA-YD-A9TA-06 17 11672468 11672468 C T DNAH9 Silent p.I2458I 0.33 TCGA-YD-A9TA-06 17 11672469 11672469 C T DNAH9 Missense_Mutation p.R2459C 0.31 benign(0.347) TCGA-YD-A9TA-06 17 11687836 11687836 G A DNAH9 Missense_Mutation p.D2681N 0.72 probably_damaging(0.991) TCGA-YD-A9TA-06 17 12655912 12655912 C T MYOCD Missense_Mutation p.S436F 0.74 deleterious(0) possibly_damaging(0.828) TCGA-YD-A9TA-06 17 12666457 12666457 C T MYOCD Silent p.S819S 0.80 TCGA-YD-A9TA-06 17 15207459 15207459 C T TEKT3 Missense_Mutation p.E423K 0.87 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 17 1538114 1538114 C T SCARF1 Missense_Mutation p.E811K 0.69 tolerated(0.17) benign(0.012) TCGA-YD-A9TA-06 17 15965110 15965110 G A NCOR1 Missense_Mutation p.A1829V 0.77 benign(0.254) TCGA-YD-A9TA-06 17 18023581 18023581 G A MYO15A Silent p.G489G 0.69 TCGA-YD-A9TA-06 17 18141913 18141913 C T LLGL1 Silent p.F732F 0.70 TCGA-YD-A9TA-06 17 18565356 18565356 G A ZNF286B Missense_Mutation p.T488I 0.19 tolerated(0.34) benign(0.417) TCGA-YD-A9TA-06 17 19284374 19284374 C T MAPK7 Silent p.A284A 0.15 TCGA-YD-A9TA-06 17 19645857 19645857 C A ALDH3A1 Splice_Site p.X160_splice 0.78 TCGA-YD-A9TA-06 17 19645858 19645858 C T ALDH3A1 Silent p.K160K 0.76 TCGA-YD-A9TA-06 17 19699574 19699574 G A ULK2 Missense_Mutation p.P611S 0.79 deleterious(0.03) probably_damaging(0.999) TCGA-YD-A9TA-06 17 21203905 21203905 C T MAP2K3 Missense_Mutation p.R72C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 17 21318983 21318983 G A KCNJ12 Missense_Mutation p.G110D 0.28 deleterious(0.02) probably_damaging(0.964) TCGA-YD-A9TA-06 17 26108093 26108093 C T NOS2 Missense_Mutation p.R278K 0.81 deleterious(0.01) benign(0.045) TCGA-YD-A9TA-06 17 26817573 26817573 C T SLC13A2 Silent p.L160L 0.43 TCGA-YD-A9TA-06 17 26817574 26817574 C T SLC13A2 Missense_Mutation p.R161C 0.43 deleterious(0.02) benign(0.052) TCGA-YD-A9TA-06 17 26821478 26821478 G A SLC13A2 Nonsense_Mutation p.W468* 0.81 TCGA-YD-A9TA-06 17 27383296 27383296 C T PIPOX Silent p.F382F 0.36 TCGA-YD-A9TA-06 17 27959462 27959462 C T SSH2 Missense_Mutation p.C890Y 0.74 deleterious_low_confidence(0) possibly_damaging(0.594) TCGA-YD-A9TA-06 17 2867253 2867253 G A RAP1GAP2 Missense_Mutation p.S128N 0.62 tolerated(0.24) benign(0.032) TCGA-YD-A9TA-06 17 29541549 29541549 T A NF1 Nonsense_Mutation p.Y491* 0.69 TCGA-YD-A9TA-06 17 29541550 29541550 C A NF1 Missense_Mutation p.L492I 0.69 tolerated(0.22) probably_damaging(0.952) TCGA-YD-A9TA-06 17 3030568 3030568 G A OR1G1 Missense_Mutation p.S93F 0.67 deleterious(0.01) probably_damaging(0.986) TCGA-YD-A9TA-06 17 30687667 30687667 G A ZNF207 Missense_Mutation p.D120N 0.12 tolerated(0.12) benign(0.084) TCGA-YD-A9TA-06 17 31415881 31415881 C T ASIC2 Silent p.R329R 0.31 TCGA-YD-A9TA-06 17 3181651 3181651 G T OR3A2 Silent p.L193L 0.22 TCGA-YD-A9TA-06 17 32647917 32647917 G A CCL8 Silent p.L97L 1.00 TCGA-YD-A9TA-06 17 33475316 33475316 G A UNC45B Missense_Mutation p.E12K 0.77 tolerated(0.25) benign(0.041) TCGA-YD-A9TA-06 17 3379536 3379536 T A ASPA Missense_Mutation p.V28E 0.69 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 17 3436119 3436119 G A TRPV3 Silent p.I299I 0.44 TCGA-YD-A9TA-06 17 36093632 36093632 G A HNF1B Nonsense_Mutation p.Q243* 0.78 TCGA-YD-A9TA-06 17 36493596 36493596 G A GPR179 Missense_Mutation p.P304L 0.20 deleterious(0) probably_damaging(0.935) TCGA-YD-A9TA-06 17 3657148 3657148 G A ITGAE Missense_Mutation p.H486Y 0.61 deleterious(0.05) benign(0.177) TCGA-YD-A9TA-06 17 36962640 36962640 G A CWC25 Missense_Mutation p.S304F 0.60 deleterious(0.01) possibly_damaging(0.794) TCGA-YD-A9TA-06 17 37075065 37075065 C T LASP1 3'UTR 0.76 TCGA-YD-A9TA-06 17 37243924 37243924 G A PLXDC1 Silent p.H281H 0.62 TCGA-YD-A9TA-06 17 37579663 37579663 G A MED1 Missense_Mutation p.P338S 0.87 tolerated(0.06) possibly_damaging(0.887) TCGA-YD-A9TA-06 17 37922482 37922482 A T IKZF3 Missense_Mutation p.I364N 0.78 tolerated(0.47) benign(0.025) TCGA-YD-A9TA-06 17 38073615 38073615 G A GSDMB Intron 0.76 TCGA-YD-A9TA-06 17 3819616 3819616 G A P2RX1 5'UTR 0.75 TCGA-YD-A9TA-06 17 38240215 38240215 C T THRA Missense_Mutation p.A117V 0.83 tolerated(0.11) possibly_damaging(0.825) TCGA-YD-A9TA-06 17 38922740 38922740 C T KRT26 3'UTR 0.59 TCGA-YD-A9TA-06 17 38953239 38953239 G A KRT28 Missense_Mutation p.R303W 0.63 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 17 38956077 38956077 G C KRT28 Silent p.P23P 0.76 TCGA-YD-A9TA-06 17 39122922 39122922 G A KRT39 Missense_Mutation p.P63S 0.70 tolerated(0.17) benign(0.186) TCGA-YD-A9TA-06 17 39767612 39767612 C T KRT16 Silent p.R252R 0.79 TCGA-YD-A9TA-06 17 40094866 40094866 G A TTC25 RNA 0.80 TCGA-YD-A9TA-06 17 40369186 40369186 G A STAT5B Nonsense_Mutation p.Q458* 0.81 TCGA-YD-A9TA-06 17 40557273 40557273 G A PTRF Missense_Mutation p.S202L 0.76 deleterious(0) probably_damaging(0.947) TCGA-YD-A9TA-06 17 40716130 40716130 C T COASY Silent p.F313F 0.66 TCGA-YD-A9TA-06 17 40937284 40937284 G A WNK4 Silent p.R420R 0.73 TCGA-YD-A9TA-06 17 41004557 41004557 C T AOC3 Silent p.T399T 0.85 TCGA-YD-A9TA-06 17 41197712 41197712 G A BRCA1 Missense_Mutation p.P1880S 0.28 tolerated_low_confidence(0.06) benign(0.018) TCGA-YD-A9TA-06 17 41852288 41852288 G C DUSP3 Missense_Mutation p.I48M 0.76 tolerated(0.05) benign(0.405) TCGA-YD-A9TA-06 17 42476966 42476966 G A GPATCH8 Missense_Mutation p.R827W 0.53 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-YD-A9TA-06 17 43005673 43005673 G A KIF18B Missense_Mutation p.T666I 0.88 tolerated(0.11) benign(0.004) TCGA-YD-A9TA-06 17 43037571 43037571 G A C1QL1 Silent p.I254I 0.74 TCGA-YD-A9TA-06 17 43506943 43506943 C T ARHGAP27 5'Flank 0.89 TCGA-YD-A9TA-06 17 43907535 43907535 C T CRHR1 Silent p.F199F 0.82 TCGA-YD-A9TA-06 17 44049231 44049231 C T MAPT Missense_Mutation p.P47L 0.71 deleterious(0) possibly_damaging(0.818) TCGA-YD-A9TA-06 17 44049232 44049232 C T MAPT Silent p.P47P 0.71 TCGA-YD-A9TA-06 17 44110815 44110815 A G KANSL1 Missense_Mutation p.V893A 0.83 deleterious(0.04) possibly_damaging(0.493) TCGA-YD-A9TA-06 17 46685348 46685348 G A HOXB7 Silent p.I170I 0.83 TCGA-YD-A9TA-06 17 46805863 46805863 G A HOXB13 Silent p.S31S 0.24 TCGA-YD-A9TA-06 17 47119686 47119686 G A IGF2BP1 Missense_Mutation p.E342K 0.78 deleterious(0.01) probably_damaging(0.98) TCGA-YD-A9TA-06 17 4717966 4717966 C T PLD2 Missense_Mutation p.S378L 0.61 deleterious(0) benign(0.101) TCGA-YD-A9TA-06 17 47246096 47246096 G A B4GALNT2 Silent p.Q443Q 0.52 TCGA-YD-A9TA-06 17 47788628 47788628 G A FAM117A Silent p.L451L 0.71 TCGA-YD-A9TA-06 17 4794880 4794880 C T MINK1 Missense_Mutation p.P624S 0.85 tolerated(0.27) benign(0.001) TCGA-YD-A9TA-06 17 48267740 48267740 C T COL1A1 Missense_Mutation p.G800E 0.78 unknown(0) TCGA-YD-A9TA-06 17 48270192 48270192 C T COL1A1 Missense_Mutation p.G614E 0.79 unknown(0) TCGA-YD-A9TA-06 17 48652911 48652911 C T CACNA1G Missense_Mutation p.S383F 0.54 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 17 48653232 48653232 C T CACNA1G Missense_Mutation p.S490F 0.90 deleterious(0.01) benign(0.342) TCGA-YD-A9TA-06 17 48701849 48701849 C T CACNA1G Missense_Mutation p.P2120S 0.85 tolerated(0.08) benign(0.407) TCGA-YD-A9TA-06 17 48753368 48753368 G A ABCC3 Nonsense_Mutation p.W995* 0.88 TCGA-YD-A9TA-06 17 48753664 48753664 G A ABCC3 Missense_Mutation p.M1031I 0.80 tolerated(0.4) benign(0.004) TCGA-YD-A9TA-06 17 48755134 48755134 G A ABCC3 Silent p.L1136L 0.80 TCGA-YD-A9TA-06 17 48765081 48765081 G A ABCC3 Missense_Mutation p.D1489N 0.79 deleterious(0) possibly_damaging(0.78) TCGA-YD-A9TA-06 17 48777084 48777084 G A ANKRD40 Missense_Mutation p.P152S 0.76 tolerated(0.76) benign(0.001) TCGA-YD-A9TA-06 17 54558128 54558128 C T ANKFN1 Silent p.L683L 0.83 TCGA-YD-A9TA-06 17 5462034 5462034 C T NLRP1 Missense_Mutation p.G661E 0.39 tolerated(0.29) benign(0.035) TCGA-YD-A9TA-06 17 5462248 5462248 C T NLRP1 Missense_Mutation p.D590N 0.88 deleterious(0.02) possibly_damaging(0.742) TCGA-YD-A9TA-06 17 5463209 5463209 C T NLRP1 Nonsense_Mutation p.W269* 0.65 TCGA-YD-A9TA-06 17 56283893 56283893 G A MKS1 Missense_Mutation p.R475C 0.78 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 17 56344874 56344874 G A LPO Missense_Mutation p.E620K 0.74 tolerated(0.25) benign(0.008) TCGA-YD-A9TA-06 17 58126976 58126976 G A HEATR6 Silent p.L838L 0.73 TCGA-YD-A9TA-06 17 60814671 60814671 G A MARCH10 Silent p.G186G 0.19 TCGA-YD-A9TA-06 17 61972430 61972430 G A CSH1 Silent p.F202F 0.66 TCGA-YD-A9TA-06 17 61987017 61987017 C T CSHL1 3'Flank 0.67 TCGA-YD-A9TA-06 17 62009678 62009678 G A CD79B 5'UTR 0.33 TCGA-YD-A9TA-06 17 62022159 62022159 C T SCN4A Silent p.Q1262Q 0.77 TCGA-YD-A9TA-06 17 62481958 62481958 G A POLG2 Missense_Mutation p.P333S 0.74 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 17 63532547 63532547 G A AXIN2 Silent p.L678L 0.65 TCGA-YD-A9TA-06 17 6386884 6386884 G A PITPNM3 Silent p.F180F 0.36 TCGA-YD-A9TA-06 17 64210663 64210663 G A APOH Missense_Mutation p.S297F 0.79 tolerated(0.07) probably_damaging(0.982) TCGA-YD-A9TA-06 17 64216726 64216726 C T APOH Missense_Mutation p.D184N 0.74 tolerated(0.08) benign(0.006) TCGA-YD-A9TA-06 17 6441394 6441394 G A PITPNM3 Missense_Mutation p.P11S 0.19 tolerated(1) unknown(0) TCGA-YD-A9TA-06 17 6554918 6554918 G A MED31 5'UTR 0.80 TCGA-YD-A9TA-06 17 6589567 6589567 G A SLC13A5 Missense_Mutation p.H556Y 0.74 deleterious(0) benign(0.012) TCGA-YD-A9TA-06 17 66890403 66890403 G A ABCA8 Missense_Mutation p.P943S 0.46 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 17 66988390 66988390 G A ABCA9 Silent p.L1214L 0.67 TCGA-YD-A9TA-06 17 67083605 67083605 G A ABCA6 Silent p.P1236P 0.43 TCGA-YD-A9TA-06 17 6978632 6978632 G A CLEC10A Intron 0.82 TCGA-YD-A9TA-06 17 7187552 7187552 C T SLC2A4 Missense_Mutation p.S194F 0.32 tolerated(1) benign(0.003) TCGA-YD-A9TA-06 17 72278087 72278087 G A DNAI2 Missense_Mutation p.R44Q 0.24 tolerated(0.17) benign(0.185) TCGA-YD-A9TA-06 17 72349036 72349036 T G KIF19 Missense_Mutation p.L686W 0.75 deleterious(0.03) possibly_damaging(0.664) TCGA-YD-A9TA-06 17 72443195 72443195 G A GPRC5C 3'UTR 0.23 TCGA-YD-A9TA-06 17 7251673 7251673 C T ACAP1 Silent p.F519F 0.77 TCGA-YD-A9TA-06 17 72739428 72739428 C T RAB37 Silent p.A110A 0.81 TCGA-YD-A9TA-06 17 72927170 72927170 C T OTOP2 Silent p.I480I 0.75 TCGA-YD-A9TA-06 17 7346316 7346316 C T FGF11 Intron 0.30 TCGA-YD-A9TA-06 17 73569607 73569607 C T LLGL2 Missense_Mutation p.S924F 0.23 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 17 7365910 7365910 G A ZBTB4 Silent p.T797T 0.40 TCGA-YD-A9TA-06 17 73780812 73780812 G A UNK 5'Flank 0.81 TCGA-YD-A9TA-06 17 73895042 73895042 G A MRPL38 Silent p.F344F 0.92 TCGA-YD-A9TA-06 17 74005631 74005631 C T EVPL Missense_Mutation p.E1219K 0.81 deleterious(0.03) benign(0.014) TCGA-YD-A9TA-06 17 7406776 7406776 C T POLR2A Missense_Mutation p.P1001S 0.36 possibly_damaging(0.474) TCGA-YD-A9TA-06 17 7415288 7415288 C T POLR2A Silent p.N1420N 0.70 TCGA-YD-A9TA-06 17 74169868 74169868 G A RNF157 Missense_Mutation p.P71S 0.77 deleterious(0.01) probably_damaging(0.951) TCGA-YD-A9TA-06 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.79 TCGA-YD-A9TA-06 17 7638023 7638023 C T DNAH2 Silent p.I325I 0.64 TCGA-YD-A9TA-06 17 76455952 76455952 G A DNAH17 Silent p.I3175I 0.90 TCGA-YD-A9TA-06 17 76455985 76455985 G A DNAH17 Silent p.I3164I 0.87 TCGA-YD-A9TA-06 17 7646266 7646266 C T DNAH2 Silent p.F570F 0.78 TCGA-YD-A9TA-06 17 76471372 76471372 G A DNAH17 Silent p.I2819I 0.74 TCGA-YD-A9TA-06 17 76568829 76568829 G A DNAH17 Missense_Mutation p.P165S 0.70 probably_damaging(0.959) TCGA-YD-A9TA-06 17 7662370 7662370 G A DNAH2 Silent p.L792L 0.79 TCGA-YD-A9TA-06 17 7682678 7682678 C T DNAH2 Missense_Mutation p.H1887Y 0.21 benign(0.001) TCGA-YD-A9TA-06 17 7696348 7696348 G A DNAH2 Missense_Mutation p.R2465Q 0.69 probably_damaging(0.961) TCGA-YD-A9TA-06 17 7722355 7722355 G A DNAH2 Missense_Mutation p.E3597K 0.85 probably_damaging(0.999) TCGA-YD-A9TA-06 17 77707327 77707327 G A ENPP7 Missense_Mutation p.G92E 0.75 tolerated(0.06) probably_damaging(0.998) TCGA-YD-A9TA-06 17 78321400 78321400 C T RNF213 Missense_Mutation p.R3089C 0.83 probably_damaging(1) TCGA-YD-A9TA-06 17 79077432 79077432 T G BAIAP2 Missense_Mutation p.L258R 0.71 tolerated(0.07) probably_damaging(0.924) TCGA-YD-A9TA-06 17 79173573 79173573 G A AZI1 Silent p.A323A 0.82 TCGA-YD-A9TA-06 17 79650869 79650869 C T ARL16 5'UTR 0.14 TCGA-YD-A9TA-06 17 79650870 79650870 C T ARL16 5'UTR 0.14 TCGA-YD-A9TA-06 17 80202607 80202607 G A CSNK1D 3'UTR 0.71 TCGA-YD-A9TA-06 17 80320321 80320321 G A TEX19 Missense_Mutation p.G99R 0.81 deleterious(0.01) probably_damaging(0.933) TCGA-YD-A9TA-06 17 80377647 80377647 C T HEXDC 5'UTR 0.87 TCGA-YD-A9TA-06 17 8272711 8272711 G A KRBA2 Missense_Mutation p.P407L 0.75 deleterious(0.02) benign(0.247) TCGA-YD-A9TA-06 17 9674899 9674899 G A DHRS7C Missense_Mutation p.A282V 0.29 tolerated(0.66) benign(0.011) TCGA-YD-A9TA-06 18 10675227 10675227 G A PIEZO2 Missense_Mutation p.P2601S 0.42 deleterious(0.03) possibly_damaging(0.809) TCGA-YD-A9TA-06 18 12277206 12277206 G A CIDEA Silent p.L199L 0.26 TCGA-YD-A9TA-06 18 14542991 14542991 G A POTEC Missense_Mutation p.S52F 0.10 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-YD-A9TA-06 18 19780761 19780761 C T GATA6 Missense_Mutation p.S588F 0.19 deleterious(0) possibly_damaging(0.89) TCGA-YD-A9TA-06 18 21422576 21422576 C A LAMA3 Silent p.G1155G 0.06 TCGA-YD-A9TA-06 18 21511090 21511090 G A LAMA3 Missense_Mutation p.S2834N 0.40 benign(0.143) TCGA-YD-A9TA-06 18 2544228 2544228 G A METTL4 Silent p.P413P 0.60 TCGA-YD-A9TA-06 18 25570082 25570082 C T CDH2 Missense_Mutation p.R526Q 0.33 tolerated(0.06) benign(0.087) TCGA-YD-A9TA-06 18 259250 259250 G A THOC1 Silent p.S150S 0.19 TCGA-YD-A9TA-06 18 28714618 28714618 G A DSC1 Missense_Mutation p.P598L 0.29 tolerated(0.21) benign(0.001) TCGA-YD-A9TA-06 18 28979324 28979324 C T DSG4 Silent p.F365F 0.41 TCGA-YD-A9TA-06 18 28979325 28979325 C T DSG4 Nonsense_Mutation p.Q366* 0.40 TCGA-YD-A9TA-06 18 29041256 29041256 G A DSG3 Missense_Mutation p.D294N 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 18 29054216 29054216 C T DSG3 Missense_Mutation p.A745V 0.41 tolerated(0.19) benign(0.014) TCGA-YD-A9TA-06 18 29099889 29099889 C T DSG2 Missense_Mutation p.P69S 0.37 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 18 29100794 29100794 G A DSG2 Missense_Mutation p.G82E 0.30 deleterious(0.02) benign(0.019) TCGA-YD-A9TA-06 18 29121239 29121239 C T DSG2 Missense_Mutation p.H655Y 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-YD-A9TA-06 18 29126416 29126416 C T DSG2 Missense_Mutation p.L1023F 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 18 29493372 29493372 G A TRAPPC8 Missense_Mutation p.P244L 0.29 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 18 30977130 30977130 C T CCDC178 Nonsense_Mutation p.W34* 0.31 TCGA-YD-A9TA-06 18 31324202 31324202 G A ASXL3 Missense_Mutation p.A1464T 0.37 benign(0.006) TCGA-YD-A9TA-06 18 31324889 31324889 C T ASXL3 Missense_Mutation p.P1693S 0.37 benign(0.019) TCGA-YD-A9TA-06 18 31324890 31324890 C T ASXL3 Missense_Mutation p.P1693L 0.36 benign(0.006) TCGA-YD-A9TA-06 18 31325380 31325380 G A ASXL3 Silent p.G1856G 0.33 TCGA-YD-A9TA-06 18 3155051 3155051 G A MYOM1 Missense_Mutation p.P513S 0.28 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 18 3188889 3188889 C T MYOM1 Missense_Mutation p.A210T 0.60 tolerated_low_confidence(0.48) benign(0.018) TCGA-YD-A9TA-06 18 3742383 3742383 G A DLGAP1 Silent p.F434F 0.66 TCGA-YD-A9TA-06 18 43262443 43262443 G A SLC14A2 Missense_Mutation p.A908T 0.24 deleterious(0.05) benign(0.146) TCGA-YD-A9TA-06 18 43319497 43319497 C T SLC14A1 Silent p.L328L 0.26 TCGA-YD-A9TA-06 18 44260206 44260206 C T ST8SIA5 Silent p.L310L 0.54 TCGA-YD-A9TA-06 18 44260418 44260418 C T ST8SIA5 Missense_Mutation p.E240K 0.25 benign(0.055) TCGA-YD-A9TA-06 18 44470660 44470660 G A PIAS2 Missense_Mutation p.P128S 0.39 tolerated(0.49) possibly_damaging(0.857) TCGA-YD-A9TA-06 18 44561029 44561029 C T TCEB3B Missense_Mutation p.G203S 0.47 tolerated(0.55) benign(0.002) TCGA-YD-A9TA-06 18 44561349 44561349 C T TCEB3B Missense_Mutation p.R96Q 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-YD-A9TA-06 18 44586005 44586005 G A KATNAL2 Missense_Mutation p.E105K 0.50 tolerated(0.26) benign(0.097) TCGA-YD-A9TA-06 18 46386001 46386001 G A CTIF 3'UTR 0.46 TCGA-YD-A9TA-06 18 47116887 47116887 C T LIPG Missense_Mutation p.P500S 0.14 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-YD-A9TA-06 18 47405434 47405434 C T MYO5B Missense_Mutation p.E1053K 0.19 tolerated(0.11) benign(0.005) TCGA-YD-A9TA-06 18 47431073 47431073 C T MYO5B Missense_Mutation p.R847Q 0.39 deleterious(0) benign(0.273) TCGA-YD-A9TA-06 18 48255633 48255633 G A MAPK4 Silent p.E391E 0.48 TCGA-YD-A9TA-06 18 48604892 48604892 A C SMAD4 3'UTR 0.39 TCGA-YD-A9TA-06 18 50976940 50976940 G A DCC Silent p.V1100V 0.22 TCGA-YD-A9TA-06 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.29 TCGA-YD-A9TA-06 18 52571593 52571593 T A CCDC68 Missense_Mutation p.K335I 0.56 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 18 52586581 52586581 G A CCDC68 Missense_Mutation p.S237F 0.44 tolerated(0.07) benign(0.128) TCGA-YD-A9TA-06 18 52942847 52942847 T G TCF4 Intron 0.27 TCGA-YD-A9TA-06 18 56148960 56148960 C T ALPK2 3'UTR 0.58 TCGA-YD-A9TA-06 18 56204272 56204272 G A ALPK2 Silent p.S1049S 0.22 TCGA-YD-A9TA-06 18 56204373 56204373 C T ALPK2 Missense_Mutation p.E1016K 0.24 tolerated(1) benign(0) TCGA-YD-A9TA-06 18 56587034 56587034 C T ZNF532 Silent p.V505V 0.29 TCGA-YD-A9TA-06 18 56963918 56963918 C T CPLX4 3'UTR 0.77 TCGA-YD-A9TA-06 18 57026477 57026477 C T LMAN1 5'UTR 0.25 TCGA-YD-A9TA-06 18 60217585 60217585 C T ZCCHC2 Missense_Mutation p.P402L 0.21 deleterious(0.02) possibly_damaging(0.632) TCGA-YD-A9TA-06 18 61156615 61156615 G A SERPINB5 Silent p.K114K 0.27 TCGA-YD-A9TA-06 18 61259684 61259684 G A SERPINB13 Missense_Mutation p.G110R 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-YD-A9TA-06 18 61324085 61324085 C T SERPINB3 Missense_Mutation p.E250K 0.47 deleterious(0.01) possibly_damaging(0.663) TCGA-YD-A9TA-06 18 61326659 61326659 C A SERPINB3 Nonsense_Mutation p.G109* 0.28 TCGA-YD-A9TA-06 18 61570532 61570532 C T SERPINB2 Missense_Mutation p.S414L 0.45 tolerated(0.07) benign(0.065) TCGA-YD-A9TA-06 18 65178693 65178693 C T DSEL Silent p.L1061L 0.28 TCGA-YD-A9TA-06 18 6890049 6890049 C A ARHGAP28 Missense_Mutation p.R408S 0.66 deleterious(0.01) probably_damaging(0.963) TCGA-YD-A9TA-06 18 6973132 6973132 G A LAMA1 Missense_Mutation p.S2233F 0.66 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 18 70450954 70450954 C T NETO1 Missense_Mutation p.R276Q 0.48 tolerated(0.15) probably_damaging(0.946) TCGA-YD-A9TA-06 18 70461623 70461623 G A NETO1 Silent p.D162D 0.28 TCGA-YD-A9TA-06 18 70502428 70502428 C T NETO1 Intron 0.54 TCGA-YD-A9TA-06 18 70526151 70526151 T A NETO1 Nonsense_Mutation p.K127* 0.54 TCGA-YD-A9TA-06 18 73130791 73130791 C T RP11-321M21.3 Missense_Mutation p.S62F 0.47 unknown(0) TCGA-YD-A9TA-06 18 73130850 73130850 G A SMIM21 Missense_Mutation p.R51C 0.32 deleterious_low_confidence(0.03) benign(0.193) TCGA-YD-A9TA-06 18 74091074 74091074 G A ZNF516 Missense_Mutation p.P999L 0.17 deleterious(0.01) benign(0.012) TCGA-YD-A9TA-06 18 74583713 74583713 C T ZNF236 Missense_Mutation p.S198L 0.63 deleterious(0.04) possibly_damaging(0.781) TCGA-YD-A9TA-06 18 77894197 77894197 C T ADNP2 Missense_Mutation p.P301S 0.52 tolerated(0.45) benign(0.281) TCGA-YD-A9TA-06 18 8813162 8813162 C T SOGA2 Silent p.L930L 0.67 TCGA-YD-A9TA-06 18 9533742 9533742 C T RALBP1 Missense_Mutation p.S540F 0.22 deleterious(0.03) probably_damaging(0.989) TCGA-YD-A9TA-06 18 9886846 9886846 G A TXNDC2 Missense_Mutation p.E124K 0.18 tolerated(0.88) benign(0.115) TCGA-YD-A9TA-06 19 10073502 10073502 C T COL5A3 Missense_Mutation p.G1615E 0.17 unknown(0) TCGA-YD-A9TA-06 19 10084870 10084870 C T COL5A3 Missense_Mutation p.E1161K 0.39 probably_damaging(0.975) TCGA-YD-A9TA-06 19 10085084 10085084 C T COL5A3 Missense_Mutation p.G1115R 0.53 probably_damaging(1) TCGA-YD-A9TA-06 19 10097096 10097096 C T COL5A3 Silent p.G749G 0.40 TCGA-YD-A9TA-06 19 10102493 10102493 G A COL5A3 Missense_Mutation p.P640S 0.27 unknown(0) TCGA-YD-A9TA-06 19 10165979 10165979 G A C3P1 RNA 0.44 TCGA-YD-A9TA-06 19 10251470 10251470 T A DNMT1 Silent p.G1170G 0.32 TCGA-YD-A9TA-06 19 1049334 1049334 C T ABCA7 Missense_Mutation p.P817L 0.54 tolerated(0.08) benign(0.197) TCGA-YD-A9TA-06 19 1051178 1051178 G T ABCA7 Missense_Mutation p.W903C 0.43 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 1056397 1056397 C T ABCA7 Silent p.L1495L 0.28 TCGA-YD-A9TA-06 19 1058192 1058192 C T ABCA7 Silent p.F1691F 0.41 TCGA-YD-A9TA-06 19 1059076 1059076 C A ABCA7 Missense_Mutation p.P1819T 0.33 deleterious(0) possibly_damaging(0.521) TCGA-YD-A9TA-06 19 10793360 10793360 C T ILF3 Missense_Mutation p.P510S 0.50 tolerated(0.08) benign(0.137) TCGA-YD-A9TA-06 19 10818239 10818239 C T QTRT1 Silent p.F198F 0.17 TCGA-YD-A9TA-06 19 11289038 11289038 G A KANK2 Silent p.F509F 0.17 TCGA-YD-A9TA-06 19 11333577 11333577 G A DOCK6 Missense_Mutation p.A1025V 0.50 tolerated(0.13) benign(0.007) TCGA-YD-A9TA-06 19 11363533 11363533 G A DOCK6 Silent p.F78F 0.42 TCGA-YD-A9TA-06 19 11577451 11577451 G A ELAVL3 Silent p.S67S 0.58 TCGA-YD-A9TA-06 19 11686020 11686020 C T ACP5 Silent p.G261G 0.28 TCGA-YD-A9TA-06 19 11917706 11917706 C T ZNF491 Missense_Mutation p.S313L 0.36 deleterious(0.05) benign(0.316) TCGA-YD-A9TA-06 19 12474402 12474402 G A ZNF442 Missense_Mutation p.P15L 0.27 tolerated_low_confidence(0.12) benign(0.017) TCGA-YD-A9TA-06 19 12474403 12474403 G A ZNF442 Missense_Mutation p.P15S 0.44 tolerated_low_confidence(0.82) benign(0.008) TCGA-YD-A9TA-06 19 12502287 12502287 A G ZNF799 Missense_Mutation p.Y309H 0.26 deleterious(0.02) benign(0.366) TCGA-YD-A9TA-06 19 12502586 12502586 G A ZNF799 Missense_Mutation p.P209L 0.45 tolerated(0.81) possibly_damaging(0.806) TCGA-YD-A9TA-06 19 12638052 12638052 G A ZNF564 Silent p.F290F 0.53 TCGA-YD-A9TA-06 19 12691426 12691426 G A ZNF490 Missense_Mutation p.S488F 0.23 tolerated(0.16) possibly_damaging(0.585) TCGA-YD-A9TA-06 19 12774161 12774161 G A MAN2B1 Silent p.V293V 0.28 TCGA-YD-A9TA-06 19 1279183 1279183 C T C19orf24 3'UTR 0.33 TCGA-YD-A9TA-06 19 12805444 12805444 G A FBXW9 Silent p.I214I 0.31 TCGA-YD-A9TA-06 19 12821467 12821467 G A TNPO2 Missense_Mutation p.S413L 0.56 deleterious(0.01) benign(0.363) TCGA-YD-A9TA-06 19 12924244 12924244 C T RNASEH2A Silent p.F288F 0.24 TCGA-YD-A9TA-06 19 13876816 13876816 C T MRI1 Silent p.N140N 0.42 TCGA-YD-A9TA-06 19 13876817 13876817 C T MRI1 Nonsense_Mutation p.R141* 0.42 TCGA-YD-A9TA-06 19 14562750 14562750 C T PKN1 Silent p.F366F 0.29 TCGA-YD-A9TA-06 19 14578381 14578381 C T PKN1 Missense_Mutation p.S585F 0.45 tolerated(0.15) benign(0.309) TCGA-YD-A9TA-06 19 14730184 14730184 C T EMR3 3'UTR 0.50 TCGA-YD-A9TA-06 19 14765878 14765878 G A EMR3 Missense_Mutation p.L165F 0.25 tolerated(0.07) benign(0.118) TCGA-YD-A9TA-06 19 14765922 14765922 C T EMR3 Missense_Mutation p.R150K 0.40 tolerated(0.59) benign(0.014) TCGA-YD-A9TA-06 19 14810033 14810033 C T ZNF333 Silent p.P82P 0.43 TCGA-YD-A9TA-06 19 15067475 15067475 C T SLC1A6 Missense_Mutation p.E328K 0.38 tolerated(0.1) benign(0.042) TCGA-YD-A9TA-06 19 15072753 15072753 C T SLC1A6 Intron 0.61 TCGA-YD-A9TA-06 19 15072769 15072769 C T SLC1A6 Intron 0.67 TCGA-YD-A9TA-06 19 15198393 15198393 G A OR1I1 Missense_Mutation p.E173K 0.21 tolerated(0.38) benign(0.004) TCGA-YD-A9TA-06 19 15290262 15290262 C T NOTCH3 Missense_Mutation p.E1125K 0.22 deleterious(0) possibly_damaging(0.764) TCGA-YD-A9TA-06 19 15350514 15350514 G A BRD4 Missense_Mutation p.P1134L 0.29 benign(0.235) TCGA-YD-A9TA-06 19 15739239 15739239 C T CYP4F8 RNA 0.23 TCGA-YD-A9TA-06 19 1578241 1578241 G A MBD3 3'UTR 0.27 TCGA-YD-A9TA-06 19 1578242 1578242 G A MBD3 3'UTR 0.27 TCGA-YD-A9TA-06 19 15852222 15852222 G A OR10H3 Missense_Mutation p.R7K 0.51 deleterious(0) benign(0.007) TCGA-YD-A9TA-06 19 15917981 15917981 G A OR10H1 Silent p.I289I 0.30 TCGA-YD-A9TA-06 19 15989731 15989731 C T CYP4F2 Silent p.Q471Q 0.53 TCGA-YD-A9TA-06 19 15997107 15997107 C T CYP4F2 Silent p.G310G 0.49 TCGA-YD-A9TA-06 19 16025177 16025177 G A CYP4F11 Silent p.F445F 0.48 TCGA-YD-A9TA-06 19 16060590 16060590 C T OR10H4 Missense_Mutation p.S258F 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 16872925 16872925 G A NWD1 Silent p.G703G 0.22 TCGA-YD-A9TA-06 19 16980642 16980642 C T SIN3B Silent p.P758P 0.42 TCGA-YD-A9TA-06 19 17025475 17025475 C T CPAMD8 Missense_Mutation p.D1307N 0.53 tolerated(0.09) probably_damaging(1) TCGA-YD-A9TA-06 19 17373358 17373358 C T USHBP1 Intron 0.20 TCGA-YD-A9TA-06 19 17611089 17611089 C T SLC27A1 Silent p.V403V 0.35 TCGA-YD-A9TA-06 19 17648345 17648345 G A FAM129C Silent p.Q227Q 0.25 TCGA-YD-A9TA-06 19 17729741 17729741 C T UNC13A Missense_Mutation p.E1435K 0.29 deleterious(0.04) possibly_damaging(0.848) TCGA-YD-A9TA-06 19 17875207 17875207 C T FCHO1 Missense_Mutation p.S48L 0.21 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 19 17918628 17918628 C T B3GNT3 Silent p.L4L 0.43 TCGA-YD-A9TA-06 19 17918760 17918760 C T B3GNT3 Silent p.A48A 0.38 TCGA-YD-A9TA-06 19 17922737 17922737 C T B3GNT3 Silent p.L309L 0.49 TCGA-YD-A9TA-06 19 17986799 17986799 G A SLC5A5 Silent p.Q194Q 0.54 TCGA-YD-A9TA-06 19 1807196 1807196 G A ATP8B3 Missense_Mutation p.R196C 0.48 deleterious(0.03) possibly_damaging(0.852) TCGA-YD-A9TA-06 19 18255880 18255880 C T MAST3 Silent p.S931S 0.19 TCGA-YD-A9TA-06 19 18507624 18507624 C T LRRC25 Silent p.L50L 0.44 TCGA-YD-A9TA-06 19 18652560 18652560 C T FKBP8 Missense_Mutation p.R74Q 0.45 tolerated(0.16) benign(0.088) TCGA-YD-A9TA-06 19 18729233 18729233 C T TMEM59L Silent p.S277S 0.62 TCGA-YD-A9TA-06 19 18870922 18870922 C T CRTC1 Missense_Mutation p.P273L 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 19216533 19216533 G A SLC25A42 Missense_Mutation p.G126E 0.44 tolerated(0.37) benign(0.008) TCGA-YD-A9TA-06 19 19261565 19261565 G A MEF2BNB-MEF2B 5'UTR 0.46 TCGA-YD-A9TA-06 19 19329976 19329976 G A NCAN Missense_Mutation p.G109E 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 19337664 19337664 G A NCAN Missense_Mutation p.G481E 0.49 tolerated(0.11) benign(0.101) TCGA-YD-A9TA-06 19 19338311 19338311 C T NCAN Missense_Mutation p.P628S 0.38 tolerated(0.58) benign(0.212) TCGA-YD-A9TA-06 19 19338350 19338350 G A NCAN Missense_Mutation p.E641K 0.53 tolerated(0.57) benign(0) TCGA-YD-A9TA-06 19 19339214 19339214 C T NCAN Missense_Mutation p.P929S 0.58 tolerated(0.08) benign(0.07) TCGA-YD-A9TA-06 19 19369358 19369358 G A HAPLN4 Missense_Mutation p.A264V 0.47 tolerated(0.63) probably_damaging(0.933) TCGA-YD-A9TA-06 19 19638962 19638962 C T NDUFA13 3'UTR 0.52 TCGA-YD-A9TA-06 19 19649214 19649214 G A CILP2 Missense_Mutation p.G19E 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-YD-A9TA-06 19 19653222 19653222 C T CILP2 Missense_Mutation p.L211F 0.30 deleterious(0) probably_damaging(0.979) TCGA-YD-A9TA-06 19 20116990 20116990 T A ZNF682 Missense_Mutation p.T441S 0.33 tolerated(0.25) benign(0.095) TCGA-YD-A9TA-06 19 20235935 20235935 G A CTC-260E6.2 RNA 0.41 TCGA-YD-A9TA-06 19 21240443 21240443 C T ZNF430 Silent p.N443N 0.57 TCGA-YD-A9TA-06 19 21720530 21720530 C T ZNF429 Missense_Mutation p.H559Y 0.52 tolerated(0.07) benign(0.333) TCGA-YD-A9TA-06 19 21934408 21934408 G A ZNF100 Intron 0.32 TCGA-YD-A9TA-06 19 22155799 22155799 G A ZNF208 Silent p.I679I 0.42 TCGA-YD-A9TA-06 19 2216282 2216282 C T DOT1L Silent p.I642I 0.30 TCGA-YD-A9TA-06 19 22379511 22379511 C T ZNF676 5'UTR 0.27 TCGA-YD-A9TA-06 19 22574869 22574869 A T ZNF98 Missense_Mutation p.S390T 0.73 tolerated(0.09) benign(0.004) TCGA-YD-A9TA-06 19 22780106 22780106 G A RN7SL860P 5'Flank 0.59 TCGA-YD-A9TA-06 19 22939793 22939793 C T ZNF99 3'Flank 0.53 TCGA-YD-A9TA-06 19 22940045 22940045 C T ZNF99 3'Flank 0.52 TCGA-YD-A9TA-06 19 22941661 22941661 A C ZNF99 Missense_Mutation p.F350L 0.50 deleterious(0) benign(0.324) TCGA-YD-A9TA-06 19 22942332 22942332 C T ZNF99 Missense_Mutation p.E127K 0.50 tolerated(1) benign(0.002) TCGA-YD-A9TA-06 19 22942446 22942446 G A ZNF99 Nonsense_Mutation p.Q89* 0.21 TCGA-YD-A9TA-06 19 23544360 23544360 G A ZNF91 Missense_Mutation p.S474F 0.43 tolerated(0.71) benign(0.005) TCGA-YD-A9TA-06 19 23836635 23836635 G A ZNF675 Missense_Mutation p.P367L 0.26 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 19 2389919 2389919 C T TMPRSS9 Missense_Mutation p.L46F 0.54 tolerated(0.08) benign(0.04) TCGA-YD-A9TA-06 19 2415766 2415766 G A TMPRSS9 Missense_Mutation p.G524R 0.30 tolerated(0.1) probably_damaging(0.931) TCGA-YD-A9TA-06 19 2994980 2994980 C T TLE6 Missense_Mutation p.S566F 0.20 deleterious(0.04) possibly_damaging(0.857) TCGA-YD-A9TA-06 19 3005948 3005948 G A TLE2 Missense_Mutation p.R507C 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-YD-A9TA-06 19 30935285 30935285 G A ZNF536 Silent p.A272A 0.43 TCGA-YD-A9TA-06 19 31038936 31038936 G A ZNF536 Missense_Mutation p.E804K 0.40 deleterious(0.01) probably_damaging(0.937) TCGA-YD-A9TA-06 19 31039904 31039904 C T ZNF536 Silent p.A1126A 0.31 TCGA-YD-A9TA-06 19 31767771 31767771 G A TSHZ3 Silent p.F976F 0.27 TCGA-YD-A9TA-06 19 31768155 31768155 G A TSHZ3 Silent p.S848S 0.20 TCGA-YD-A9TA-06 19 32945868 32945868 C T DPY19L3 Silent p.F337F 0.22 TCGA-YD-A9TA-06 19 33106616 33106616 G A ANKRD27 Missense_Mutation p.P708L 0.28 tolerated(0.36) benign(0) TCGA-YD-A9TA-06 19 34890871 34890871 C T GPI Missense_Mutation p.T547I 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.864) TCGA-YD-A9TA-06 19 35258221 35258221 C T ZNF599 Missense_Mutation p.G81S 0.31 deleterious(0.03) probably_damaging(0.949) TCGA-YD-A9TA-06 19 35719265 35719265 C T FAM187B Missense_Mutation p.E107K 0.26 tolerated(0.14) benign(0.038) TCGA-YD-A9TA-06 19 35800908 35800908 G A MAG Missense_Mutation p.E455K 0.15 deleterious(0.05) possibly_damaging(0.551) TCGA-YD-A9TA-06 19 35842747 35842747 C A FFAR1 Missense_Mutation p.A98D 0.50 deleterious(0.01) probably_damaging(0.971) TCGA-YD-A9TA-06 19 35850002 35850002 C T FFAR3 Silent p.F70F 0.43 TCGA-YD-A9TA-06 19 36046215 36046215 C T ATP4A Missense_Mutation p.G727R 0.43 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 36108239 36108239 C T HAUS5 Silent p.L202L 0.19 TCGA-YD-A9TA-06 19 3612083 3612083 G A CACTIN Silent p.F705F 0.49 TCGA-YD-A9TA-06 19 3619156 3619156 G A CACTIN Silent p.A323A 0.28 TCGA-YD-A9TA-06 19 36206149 36206149 G A ZBTB32 Silent p.G207G 0.48 TCGA-YD-A9TA-06 19 362223 362223 C T THEG Missense_Mutation p.D373N 0.52 deleterious_low_confidence(0.01) benign(0.12) TCGA-YD-A9TA-06 19 362382 362382 G A THEG Missense_Mutation p.R320C 0.25 deleterious(0.03) probably_damaging(0.949) TCGA-YD-A9TA-06 19 36253027 36253027 C T C19orf55 Missense_Mutation p.P140L 0.38 tolerated(0.12) benign(0.023) TCGA-YD-A9TA-06 19 36253028 36253028 C T C19orf55 Silent p.P140P 0.37 TCGA-YD-A9TA-06 19 36258805 36258805 T G C19orf55 Missense_Mutation p.V353G 0.55 deleterious(0.03) benign(0.268) TCGA-YD-A9TA-06 19 36271166 36271166 C T ARHGAP33 Silent p.I185I 0.21 TCGA-YD-A9TA-06 19 36333382 36333382 C T NPHS1 Missense_Mutation p.R802Q 0.36 tolerated(0.35) benign(0.015) TCGA-YD-A9TA-06 19 36831076 36831076 G A ZFP14 3'UTR 0.69 TCGA-YD-A9TA-06 19 38127006 38127006 G A ZFP30 Missense_Mutation p.P146S 0.19 tolerated(0.29) benign(0) TCGA-YD-A9TA-06 19 38230551 38230551 C T ZNF573 Silent p.G280G 0.52 TCGA-YD-A9TA-06 19 3831772 3831772 A G ZFR2 Silent p.L162L 0.13 TCGA-YD-A9TA-06 19 39010063 39010063 C T RYR1 Missense_Mutation p.P3410S 0.44 benign(0.001) TCGA-YD-A9TA-06 19 39068686 39068686 C T RYR1 Silent p.T4767T 0.36 TCGA-YD-A9TA-06 19 39104906 39104906 C T MAP4K1 Silent p.K132K 0.19 TCGA-YD-A9TA-06 19 39303627 39303627 G A LGALS4 5'UTR 0.45 TCGA-YD-A9TA-06 19 39303628 39303628 G A LGALS4 5'UTR 0.45 TCGA-YD-A9TA-06 19 39516062 39516062 G A FBXO27 Missense_Mutation p.R281C 0.44 tolerated(0.07) benign(0.001) TCGA-YD-A9TA-06 19 39575922 39575922 C T PAPL Missense_Mutation p.P5S 0.44 tolerated_low_confidence(0.47) benign(0.003) TCGA-YD-A9TA-06 19 39694726 39694726 C T SYCN Missense_Mutation p.E57K 0.30 tolerated(0.28) benign(0.173) TCGA-YD-A9TA-06 19 39906034 39906034 T G PLEKHG2 Missense_Mutation p.V145G 0.26 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-YD-A9TA-06 19 40363160 40363160 G A FCGBP Silent p.L4970L 0.50 TCGA-YD-A9TA-06 19 40368625 40368625 G A FCGBP Silent p.I4241I 0.17 TCGA-YD-A9TA-06 19 40376513 40376513 C T FCGBP Splice_Site p.X3931_splice 0.60 TCGA-YD-A9TA-06 19 40420075 40420075 C T FCGBP Silent p.T973T 0.11 TCGA-YD-A9TA-06 19 40900203 40900203 G A PRX Silent p.P1352P 0.18 TCGA-YD-A9TA-06 19 40900204 40900204 G A PRX Missense_Mutation p.P1352L 0.18 deleterious(0.03) possibly_damaging(0.851) TCGA-YD-A9TA-06 19 40900205 40900205 G A PRX Missense_Mutation p.P1352S 0.18 tolerated(0.37) possibly_damaging(0.803) TCGA-YD-A9TA-06 19 40901094 40901094 C T PRX Silent p.R1055R 0.52 TCGA-YD-A9TA-06 19 41038673 41038673 G A SPTBN4 Missense_Mutation p.E1364K 0.17 tolerated(0.13) probably_damaging(0.999) TCGA-YD-A9TA-06 19 41066475 41066475 C T SPTBN4 Intron 0.40 TCGA-YD-A9TA-06 19 41066476 41066476 C T SPTBN4 Intron 0.36 TCGA-YD-A9TA-06 19 41095008 41095008 G A SHKBP1 Missense_Mutation p.D505N 0.61 deleterious(0) benign(0.048) TCGA-YD-A9TA-06 19 41105457 41105457 A C LTBP4 Silent p.P112P 0.29 TCGA-YD-A9TA-06 19 41117848 41117848 C T LTBP4 Missense_Mutation p.P780S 0.50 tolerated(0.06) probably_damaging(0.915) TCGA-YD-A9TA-06 19 41450360 41450360 C T AC092071.1 5'Flank 0.53 TCGA-YD-A9TA-06 19 4171764 4171764 C T CREB3L3 Missense_Mutation p.S395F 0.18 tolerated(0.07) possibly_damaging(0.641) TCGA-YD-A9TA-06 19 41743966 41743966 C T AXL Missense_Mutation p.P301S 0.28 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 19 41748899 41748899 G A AXL Missense_Mutation p.R475Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 41810109 41810109 C T HNRNPUL1 Silent p.I735I 0.57 TCGA-YD-A9TA-06 19 41822585 41822585 C T CCDC97 Missense_Mutation p.L115F 0.21 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 42128115 42128115 C T CEACAM4 Missense_Mutation p.G151R 0.36 tolerated(0.08) benign(0.038) TCGA-YD-A9TA-06 19 42128121 42128121 G A CEACAM4 Missense_Mutation p.P149S 0.35 tolerated(0.13) benign(0.046) TCGA-YD-A9TA-06 19 42221474 42221474 C T CEACAM5 Silent p.T353T 0.46 TCGA-YD-A9TA-06 19 4224132 4224132 C T ANKRD24 Silent p.A1102A 0.37 TCGA-YD-A9TA-06 19 42472981 42472981 G A ATP1A3 Silent p.I938I 0.32 TCGA-YD-A9TA-06 19 42583445 42583445 C T ZNF574 Silent p.F229F 0.30 TCGA-YD-A9TA-06 19 42794822 42794822 C T CIC Silent p.P634P 0.53 TCGA-YD-A9TA-06 19 42814219 42814219 C T PRR19 Silent p.F161F 0.18 TCGA-YD-A9TA-06 19 43097889 43097889 G A CEACAM8 Silent p.N76N 0.24 TCGA-YD-A9TA-06 19 43097969 43097969 C T CEACAM8 Missense_Mutation p.E50K 0.23 deleterious(0) possibly_damaging(0.714) TCGA-YD-A9TA-06 19 43233408 43233408 C T PSG3 Silent p.G370G 0.26 TCGA-YD-A9TA-06 19 4327152 4327152 G A STAP2 Silent p.F244F 0.19 TCGA-YD-A9TA-06 19 43371171 43371171 C T PSG1 3'Flank 0.50 TCGA-YD-A9TA-06 19 43372958 43372958 C T PSG1 Missense_Mutation p.R313Q 0.36 tolerated(0.29) benign(0.013) TCGA-YD-A9TA-06 19 43373018 43373018 C T PSG1 Missense_Mutation p.R293K 0.21 tolerated(0.13) possibly_damaging(0.45) TCGA-YD-A9TA-06 19 43411858 43411858 T G PSG6 Silent p.V285V 0.26 TCGA-YD-A9TA-06 19 43757724 43757724 C T PSG9 3'UTR 0.23 TCGA-YD-A9TA-06 19 43979567 43979567 G A PHLDB3 Missense_Mutation p.P640S 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 43979568 43979568 G A PHLDB3 Silent p.A639A 0.36 TCGA-YD-A9TA-06 19 44470970 44470970 C T ZNF221 Missense_Mutation p.S439F 0.49 deleterious(0.04) probably_damaging(0.974) TCGA-YD-A9TA-06 19 44586195 44586195 C T ZNF284 Missense_Mutation p.H58Y 0.49 tolerated(0.29) benign(0.012) TCGA-YD-A9TA-06 19 44660743 44660743 C T ZNF234 Missense_Mutation p.H192Y 0.40 tolerated(0.74) benign(0.433) TCGA-YD-A9TA-06 19 44661163 44661163 C T ZNF234 Missense_Mutation p.R332C 0.23 tolerated(0.16) benign(0.023) TCGA-YD-A9TA-06 19 44932442 44932442 A T ZNF229 3'UTR 0.27 TCGA-YD-A9TA-06 19 45175233 45175233 C T CEACAM19 Silent p.C10C 0.22 TCGA-YD-A9TA-06 19 4523740 4523740 C T PLIN5 Missense_Mutation p.E398K 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-YD-A9TA-06 19 4534041 4534041 C T PLIN5 Missense_Mutation p.E16K 0.62 deleterious(0.01) benign(0.328) TCGA-YD-A9TA-06 19 45535883 45535883 C T RELB Silent p.F361F 0.50 TCGA-YD-A9TA-06 19 45575056 45575056 C T ZNF296 Missense_Mutation p.E411K 0.32 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 19 45810825 45810825 C T CKM Silent p.L287L 0.29 TCGA-YD-A9TA-06 19 45850723 45850723 C T KLC3 Missense_Mutation p.R170C 0.20 deleterious(0.03) benign(0.043) TCGA-YD-A9TA-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.46 TCGA-YD-A9TA-06 19 46318244 46318244 G A RSPH6A Missense_Mutation p.S64F 0.24 deleterious_low_confidence(0.04) benign(0.367) TCGA-YD-A9TA-06 19 46338421 46338421 G A SYMPK Silent p.P436P 0.29 TCGA-YD-A9TA-06 19 46627236 46627236 G A IGFL3 Missense_Mutation p.S86F 0.41 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 19 46627308 46627308 G A IGFL3 Missense_Mutation p.S62F 0.54 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 19 46832632 46832632 C T HIF3A Missense_Mutation p.P537S 0.40 tolerated(0.07) benign(0.011) TCGA-YD-A9TA-06 19 4702094 4702094 G A DPP9 Silent p.V319V 0.20 TCGA-YD-A9TA-06 19 47225549 47225549 G A STRN4 Missense_Mutation p.T659I 0.29 deleterious(0.02) possibly_damaging(0.836) TCGA-YD-A9TA-06 19 47228784 47228784 G A STRN4 Missense_Mutation p.S464F 0.52 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 19 47422003 47422003 C T ARHGAP35 Missense_Mutation p.T24I 0.60 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 19 47823456 47823456 C T C5AR1 Missense_Mutation p.P141L 0.43 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 48343059 48343059 C T CRX Silent p.S245S 0.44 TCGA-YD-A9TA-06 19 48525433 48525433 C T ELSPBP1 Missense_Mutation p.S174F 0.31 deleterious(0.01) possibly_damaging(0.77) TCGA-YD-A9TA-06 19 48790080 48790080 C T ZNF114 Missense_Mutation p.S400L 0.24 deleterious(0) benign(0.32) TCGA-YD-A9TA-06 19 4891351 4891351 C T ARRDC5 Missense_Mutation p.D246N 0.20 deleterious(0.02) probably_damaging(0.94) TCGA-YD-A9TA-06 19 49391410 49391410 C T TULP2 Missense_Mutation p.D249N 0.19 deleterious(0.04) benign(0.156) TCGA-YD-A9TA-06 19 49404188 49404188 C T NUCB1 Silent p.P45P 0.29 TCGA-YD-A9TA-06 19 49551578 49551578 C T CGB8 Missense_Mutation p.E23K 0.20 tolerated(0.61) possibly_damaging(0.547) TCGA-YD-A9TA-06 19 49551579 49551579 C T CGB8 Silent p.K22K 0.20 TCGA-YD-A9TA-06 19 49964882 49964882 C T ALDH16A1 Missense_Mutation p.T195I 0.38 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 50097851 50097851 C T PRR12 Missense_Mutation p.R114C 0.28 benign(0.001) TCGA-YD-A9TA-06 19 50105149 50105149 C T PRR12 Missense_Mutation p.R1583C 0.64 unknown(0) TCGA-YD-A9TA-06 19 50266463 50266463 C T TSKS Silent p.E14E 0.20 TCGA-YD-A9TA-06 19 50385302 50385302 C T TBC1D17 Missense_Mutation p.P178S 0.34 tolerated(0.1) probably_damaging(1) TCGA-YD-A9TA-06 19 50453419 50453419 C G SIGLEC11 Silent p.G635G 0.33 TCGA-YD-A9TA-06 19 50461676 50461676 G A SIGLEC11 Silent p.V505V 0.58 TCGA-YD-A9TA-06 19 50548475 50548475 C T ZNF473 Missense_Mutation p.H259Y 0.47 deleterious(0.01) benign(0.403) TCGA-YD-A9TA-06 19 50764839 50764839 C T MYH14 Silent p.V844V 0.69 TCGA-YD-A9TA-06 19 50911986 50911986 G A POLD1 Intron 0.11 TCGA-YD-A9TA-06 19 50940735 50940735 C T MYBPC2 Missense_Mutation p.R157C 0.36 tolerated(0.1) possibly_damaging(0.502) TCGA-YD-A9TA-06 19 50944230 50944230 G A MYBPC2 Silent p.K222K 0.22 TCGA-YD-A9TA-06 19 50957377 50957377 C T MYBPC2 Missense_Mutation p.T617I 0.43 tolerated(0.06) benign(0.117) TCGA-YD-A9TA-06 19 50957378 50957378 C T MYBPC2 Silent p.T617T 0.40 TCGA-YD-A9TA-06 19 51017859 51017859 G A ASPDH 5'Flank 0.29 TCGA-YD-A9TA-06 19 51133199 51133199 G A SYT3 Missense_Mutation p.R302C 0.32 deleterious(0) possibly_damaging(0.715) TCGA-YD-A9TA-06 19 51205862 51205862 G A SHANK1 Missense_Mutation p.P537S 0.75 possibly_damaging(0.857) TCGA-YD-A9TA-06 19 51273872 51273872 G A GPR32 Silent p.S5S 0.59 TCGA-YD-A9TA-06 19 51452217 51452217 G A KLK5 Missense_Mutation p.R164C 0.40 tolerated(0.21) benign(0.065) TCGA-YD-A9TA-06 19 51466627 51466627 G A KLK6 Missense_Mutation p.P126S 0.51 tolerated(0.35) benign(0.009) TCGA-YD-A9TA-06 19 51503961 51503961 C T KLK8 Silent p.L28L 0.38 TCGA-YD-A9TA-06 19 51518160 51518160 G A KLK10 Missense_Mutation p.L243F 0.44 deleterious(0) possibly_damaging(0.752) TCGA-YD-A9TA-06 19 51532385 51532385 C T KLK12 3'Flank 0.50 TCGA-YD-A9TA-06 19 51534101 51534101 C T KLK12 Silent p.G178G 0.29 TCGA-YD-A9TA-06 19 51628169 51628169 C T SIGLEC9 5'UTR 0.35 TCGA-YD-A9TA-06 19 51631700 51631700 G A SIGLEC9 Missense_Mutation p.R379K 0.47 tolerated(0.1) benign(0.227) TCGA-YD-A9TA-06 19 51646022 51646022 G A SIGLEC7 Nonsense_Mutation p.W132* 0.16 TCGA-YD-A9TA-06 19 51728799 51728799 G A CD33 Silent p.E121E 0.29 TCGA-YD-A9TA-06 19 51768722 51768722 G A SIGLECL1 Missense_Mutation p.M41I 0.49 tolerated(0.11) benign(0.007) TCGA-YD-A9TA-06 19 51768723 51768723 G A SIGLECL1 Missense_Mutation p.G42R 0.47 tolerated(0.07) benign(0.04) TCGA-YD-A9TA-06 19 51768724 51768724 G A SIGLECL1 Missense_Mutation p.G42E 0.46 tolerated(0.27) benign(0.028) TCGA-YD-A9TA-06 19 51984686 51984686 C T CEACAM18 Missense_Mutation p.S208F 0.24 deleterious(0.01) benign(0.401) TCGA-YD-A9TA-06 19 51984687 51984687 C G CEACAM18 Silent p.S208S 0.24 TCGA-YD-A9TA-06 19 52003211 52003211 C T SIGLEC12 Nonsense_Mutation p.W257* 0.53 TCGA-YD-A9TA-06 19 52129351 52129351 C T SIGLEC5 Silent p.R466R 0.19 TCGA-YD-A9TA-06 19 52149580 52149580 G T SIGLEC14 Missense_Mutation p.F117L 0.35 deleterious(0.03) benign(0.017) TCGA-YD-A9TA-06 19 52195929 52195929 C T MIR99B RNA 0.42 TCGA-YD-A9TA-06 19 52216708 52216708 C T HAS1 Missense_Mutation p.R570Q 0.38 deleterious(0) unknown(0) TCGA-YD-A9TA-06 19 52394156 52394156 G A ZNF649 Silent p.F411F 0.23 TCGA-YD-A9TA-06 19 52919388 52919388 G A ZNF528 Missense_Mutation p.R428Q 0.39 tolerated(1) benign(0.023) TCGA-YD-A9TA-06 19 52937214 52937214 T A ZNF534 Missense_Mutation p.L8M 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-YD-A9TA-06 19 53210108 53210108 G A ZNF611 Missense_Mutation p.S67F 0.24 tolerated(0.67) probably_damaging(0.979) TCGA-YD-A9TA-06 19 53453953 53453953 G A ZNF816 Missense_Mutation p.H359Y 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 19 53572345 53572345 A - ZNF160 Frame_Shift_Del p.F481Sfs*44 0.19 TCGA-YD-A9TA-06 19 53612707 53612707 G A ZNF415 Silent p.F197F 0.20 TCGA-YD-A9TA-06 19 53875638 53875638 C T ZNF525 Intron 0.22 TCGA-YD-A9TA-06 19 54198498 54198498 C T MIR519B RNA 0.28 TCGA-YD-A9TA-06 19 54327451 54327451 G A NLRP12 5'UTR 0.16 TCGA-YD-A9TA-06 19 54387447 54387447 G A PRKCG Missense_Mutation p.E79K 0.44 tolerated(0.08) possibly_damaging(0.88) TCGA-YD-A9TA-06 19 54545592 54545592 G A VSTM1 Silent p.S142S 0.27 TCGA-YD-A9TA-06 19 54625919 54625919 C T PRPF31 Silent p.F122F 0.49 TCGA-YD-A9TA-06 19 54721226 54721226 C T LILRB3 Missense_Mutation p.D572N 0.78 tolerated(0.09) probably_damaging(0.981) TCGA-YD-A9TA-06 19 54745754 54745754 C T LILRA6 Missense_Mutation p.G119E 0.30 deleterious(0.02) probably_damaging(0.926) TCGA-YD-A9TA-06 19 54745755 54745755 C T LILRA6 Splice_Site p.X119_splice 0.30 TCGA-YD-A9TA-06 19 54754641 54754641 C A LILRB5 3'UTR 0.33 TCGA-YD-A9TA-06 19 54756375 54756375 C T LILRB5 Silent p.E504E 0.49 TCGA-YD-A9TA-06 19 54782167 54782167 G A LILRB2 Missense_Mutation p.S402F 0.45 deleterious(0.02) benign(0.414) TCGA-YD-A9TA-06 19 54818728 54818728 C T LILRA5 Silent p.Q290Q 0.46 TCGA-YD-A9TA-06 19 54963357 54963357 C T LENG8 Silent p.A42A 0.46 TCGA-YD-A9TA-06 19 549843 549843 C T GZMM 3'UTR 0.42 TCGA-YD-A9TA-06 19 55085788 55085788 C T LILRA2 Missense_Mutation p.L31F 0.39 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 19 55086907 55086907 C T LILRA2 Silent p.F280F 0.54 TCGA-YD-A9TA-06 19 55112196 55112196 C T LILRA1 Missense_Mutation p.L462F 0.12 deleterious(0.03) possibly_damaging(0.904) TCGA-YD-A9TA-06 19 55144122 55144122 C T LILRB1 Missense_Mutation p.S290F 0.47 tolerated(0.07) benign(0.046) TCGA-YD-A9TA-06 19 55148082 55148082 G A LILRB1 Silent p.E597E 0.32 TCGA-YD-A9TA-06 19 55148083 55148083 G A LILRB1 Missense_Mutation p.D598N 0.37 tolerated(0.2) benign(0.049) TCGA-YD-A9TA-06 19 55179151 55179151 G T LILRB4 Missense_Mutation p.R369S 0.54 deleterious(0.01) benign(0.092) TCGA-YD-A9TA-06 19 55263989 55263989 C T KIR2DL3 3'UTR 0.29 TCGA-YD-A9TA-06 19 55316256 55316256 G A KIR2DL4 Missense_Mutation p.D29N 0.52 tolerated(0.28) benign(0.028) TCGA-YD-A9TA-06 19 55341803 55341803 C T KIR3DL1 3'UTR 0.28 TCGA-YD-A9TA-06 19 55344218 55344218 C T KIR3DL1 3'Flank 0.23 TCGA-YD-A9TA-06 19 55349050 55349050 C T KIR2DS4 Silent p.S30S 0.31 TCGA-YD-A9TA-06 19 55401163 55401163 G A FCAR Silent p.P266P 0.41 TCGA-YD-A9TA-06 19 55420773 55420773 C T NCR1 Silent p.F175F 0.15 TCGA-YD-A9TA-06 19 55450949 55450949 C T NLRP7 Missense_Mutation p.R413Q 0.61 tolerated(0.15) benign(0.029) TCGA-YD-A9TA-06 19 55451265 55451265 C T NLRP7 Missense_Mutation p.D308N 0.19 deleterious(0.01) benign(0.374) TCGA-YD-A9TA-06 19 55494392 55494392 G A NLRP2 Silent p.Q442Q 0.40 TCGA-YD-A9TA-06 19 55494945 55494945 G A NLRP2 Missense_Mutation p.E627K 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-YD-A9TA-06 19 55512344 55512344 C T NLRP2 3'UTR 0.26 TCGA-YD-A9TA-06 19 55715150 55715150 C T PTPRH Missense_Mutation p.A296T 0.53 unknown(0) TCGA-YD-A9TA-06 19 56244644 56244644 G A NLRP9 Missense_Mutation p.L185F 0.42 tolerated(0.58) possibly_damaging(0.822) TCGA-YD-A9TA-06 19 56244828 56244828 G A NLRP9 Silent p.F123F 0.25 TCGA-YD-A9TA-06 19 56320613 56320613 C T NLRP11 Missense_Mutation p.E455K 0.19 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 19 56369375 56369375 T C NLRP4 Missense_Mutation p.S206P 0.30 deleterious(0.01) possibly_damaging(0.786) TCGA-YD-A9TA-06 19 56466662 56466662 G A NLRP8 Missense_Mutation p.G413E 0.48 deleterious(0.01) possibly_damaging(0.84) TCGA-YD-A9TA-06 19 56467279 56467279 G A NLRP8 Missense_Mutation p.E619K 0.54 tolerated(0.1) probably_damaging(0.996) TCGA-YD-A9TA-06 19 5687293 5687293 G A HSD11B1L Missense_Mutation p.V137I 0.31 tolerated(0.27) possibly_damaging(0.531) TCGA-YD-A9TA-06 19 56895191 56895191 C T ZNF582 3'UTR 0.24 TCGA-YD-A9TA-06 19 57325575 57325575 T A PEG3 Missense_Mutation p.E1412V 0.22 deleterious(0.01) benign(0.424) TCGA-YD-A9TA-06 19 57649922 57649922 C T ZIM3 Silent p.G20G 0.16 TCGA-YD-A9TA-06 19 58131637 58131637 C T ZNF134 Silent p.L50L 0.50 TCGA-YD-A9TA-06 19 5844132 5844132 C T FUT3 Missense_Mutation p.R240Q 0.46 tolerated(1) benign(0.006) TCGA-YD-A9TA-06 19 5866940 5866940 G A FUT5 Missense_Mutation p.P266L 0.32 tolerated(0.15) benign(0.003) TCGA-YD-A9TA-06 19 58967778 58967778 C T ZNF324B Silent p.A489A 0.51 TCGA-YD-A9TA-06 19 59010613 59010613 G A SLC27A5 Intron 0.38 TCGA-YD-A9TA-06 19 59028665 59028665 G A ZBTB45 Nonsense_Mutation p.R126* 0.21 TCGA-YD-A9TA-06 19 6307259 6307259 C T ACER1 Silent p.V177V 0.17 TCGA-YD-A9TA-06 19 6467485 6467485 G A DENND1C 3'UTR 0.39 TCGA-YD-A9TA-06 19 6467486 6467486 G A DENND1C 3'UTR 0.37 TCGA-YD-A9TA-06 19 6678167 6678167 G A C3 Missense_Mutation p.P1616S 0.56 tolerated(0.66) benign(0.002) TCGA-YD-A9TA-06 19 6682022 6682022 C T C3 Missense_Mutation p.R1427K 0.43 tolerated(0.31) benign(0.043) TCGA-YD-A9TA-06 19 6685103 6685103 G A C3 Missense_Mutation p.H1289Y 0.32 tolerated(0.81) benign(0.005) TCGA-YD-A9TA-06 19 6685104 6685104 G A C3 Silent p.D1288D 0.30 TCGA-YD-A9TA-06 19 6686800 6686800 C T C3 Silent p.R1201R 0.28 TCGA-YD-A9TA-06 19 6694562 6694562 C T C3 Missense_Mutation p.E1012K 0.23 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 19 6712599 6712599 G A C3 Missense_Mutation p.P347S 0.17 tolerated(0.44) benign(0.027) TCGA-YD-A9TA-06 19 6760837 6760837 G A SH2D3A Silent p.L77L 0.47 TCGA-YD-A9TA-06 19 6902024 6902024 C T EMR1 Missense_Mutation p.S218L 0.47 tolerated(0.32) benign(0.002) TCGA-YD-A9TA-06 19 6904116 6904116 C T EMR1 Missense_Mutation p.S291F 0.26 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 19 6919583 6919583 C T EMR1 Missense_Mutation p.S482F 0.49 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 694878 694878 G A PRSS57 Missense_Mutation p.H58Y 0.55 tolerated(1) benign(0.016) TCGA-YD-A9TA-06 19 6984805 6984805 C T EMR4P RNA 0.42 TCGA-YD-A9TA-06 19 7805417 7805417 G A CD209 3'UTR 0.16 TCGA-YD-A9TA-06 19 7806706 7806706 C T CD209 3'UTR 0.53 TCGA-YD-A9TA-06 19 7811360 7811360 C T CD209 Missense_Mutation p.G55E 0.33 deleterious(0.02) benign(0.002) TCGA-YD-A9TA-06 19 7828116 7828116 C T CLEC4M 5'UTR 0.49 TCGA-YD-A9TA-06 19 8127133 8127133 C T CCL25 3'UTR 0.45 TCGA-YD-A9TA-06 19 8146263 8146263 C T FBN3 Missense_Mutation p.E2439K 0.27 tolerated(0.13) benign(0.098) TCGA-YD-A9TA-06 19 8176550 8176550 C T FBN3 Missense_Mutation p.D1356N 0.31 tolerated(0.08) possibly_damaging(0.718) TCGA-YD-A9TA-06 19 830812 830812 G A AZU1 Silent p.G155G 0.37 TCGA-YD-A9TA-06 19 8553557 8553557 C T HNRNPM Intron 0.26 TCGA-YD-A9TA-06 19 8564127 8564127 G A PRAM1 Missense_Mutation p.P189S 0.37 tolerated(0.05) possibly_damaging(0.596) TCGA-YD-A9TA-06 19 8601841 8601841 C T MYO1F Silent p.E597E 0.48 TCGA-YD-A9TA-06 19 8841766 8841766 G A OR2Z1 Missense_Mutation p.V126M 0.41 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 19 9045848 9045848 G A MUC16 Missense_Mutation p.S11928L 0.51 possibly_damaging(0.504) TCGA-YD-A9TA-06 19 9048053 9048053 G A MUC16 Missense_Mutation p.S11193L 0.27 benign(0.092) TCGA-YD-A9TA-06 19 9060236 9060236 G A MUC16 Silent p.I9070I 0.45 TCGA-YD-A9TA-06 19 9061612 9061612 C T MUC16 Missense_Mutation p.E8612K 0.32 unknown(0) TCGA-YD-A9TA-06 19 9062358 9062358 T A MUC16 Missense_Mutation p.H8363L 0.26 unknown(0) TCGA-YD-A9TA-06 19 9062607 9062607 G A MUC16 Missense_Mutation p.P8280L 0.15 unknown(0) TCGA-YD-A9TA-06 19 9063274 9063274 C G MUC16 Missense_Mutation p.V8058L 0.47 unknown(0) TCGA-YD-A9TA-06 19 9064833 9064833 G A MUC16 Missense_Mutation p.S7538F 0.26 unknown(0) TCGA-YD-A9TA-06 19 9064974 9064974 G A MUC16 Missense_Mutation p.S7491F 0.60 unknown(0) TCGA-YD-A9TA-06 19 9065039 9065039 C T MUC16 Silent p.E7469E 0.58 TCGA-YD-A9TA-06 19 9065265 9065265 G A MUC16 Missense_Mutation p.S7394F 0.29 unknown(0) TCGA-YD-A9TA-06 19 9065288 9065288 C T MUC16 Silent p.V7386V 0.46 TCGA-YD-A9TA-06 19 9065615 9065615 C T MUC16 Silent p.E7277E 0.44 TCGA-YD-A9TA-06 19 9067317 9067317 G A MUC16 Missense_Mutation p.S6710L 0.49 unknown(0) TCGA-YD-A9TA-06 19 9068387 9068387 C T MUC16 Missense_Mutation p.M6353I 0.29 unknown(0) TCGA-YD-A9TA-06 19 9070839 9070839 C T MUC16 Missense_Mutation p.R5536Q 0.17 unknown(0) TCGA-YD-A9TA-06 19 9071106 9071106 G A MUC16 Missense_Mutation p.S5447L 0.22 unknown(0) TCGA-YD-A9TA-06 19 9072091 9072091 G A MUC16 Missense_Mutation p.P5119S 0.19 unknown(0) TCGA-YD-A9TA-06 19 9072659 9072659 C T MUC16 Silent p.R4929R 0.54 TCGA-YD-A9TA-06 19 9074625 9074625 G A MUC16 Missense_Mutation p.P4274L 0.38 unknown(0) TCGA-YD-A9TA-06 19 9074626 9074626 G A MUC16 Missense_Mutation p.P4274S 0.37 unknown(0) TCGA-YD-A9TA-06 19 9074822 9074822 C T MUC16 Silent p.R4208R 0.41 TCGA-YD-A9TA-06 19 9075542 9075542 G A MUC16 Silent p.I3968I 0.50 TCGA-YD-A9TA-06 19 9076530 9076530 C T MUC16 Missense_Mutation p.G3639E 0.54 unknown(0) TCGA-YD-A9TA-06 19 9082550 9082550 C T MUC16 Missense_Mutation p.E3089K 0.31 unknown(0) TCGA-YD-A9TA-06 19 9085057 9085057 G A MUC16 Missense_Mutation p.S2253F 0.24 unknown(0) TCGA-YD-A9TA-06 19 9087025 9087025 C T MUC16 Missense_Mutation p.G1597E 0.42 unknown(0) TCGA-YD-A9TA-06 19 9088666 9088666 C T MUC16 Missense_Mutation p.G1050E 0.46 unknown(0) TCGA-YD-A9TA-06 19 9090414 9090414 C T MUC16 Silent p.K467K 0.20 TCGA-YD-A9TA-06 19 9203991 9203991 A G OR1M1 Missense_Mutation p.E24G 0.24 deleterious(0) benign(0) TCGA-YD-A9TA-06 19 9213041 9213041 C T OR7G2 Silent p.R314R 0.62 TCGA-YD-A9TA-06 19 9324711 9324711 G A OR7D4 Missense_Mutation p.S268F 0.72 deleterious(0.02) benign(0.25) TCGA-YD-A9TA-06 19 9325421 9325421 G A OR7D4 Silent p.F31F 0.17 TCGA-YD-A9TA-06 19 9362199 9362199 C T OR7E24 Silent p.G160G 0.51 TCGA-YD-A9TA-06 19 9721094 9721094 G A ZNF561 Missense_Mutation p.H415Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 19 9800829 9800829 C T ZNF812 Missense_Mutation p.M450I 0.31 tolerated(0.73) possibly_damaging(0.577) TCGA-YD-A9TA-06 19 9801066 9801066 A T ZNF812 Silent p.I371I 0.26 TCGA-YD-A9TA-06 1 100378043 100378043 C T AGL Missense_Mutation p.P1307S 0.53 deleterious(0) probably_damaging(0.98) TCGA-YD-A9TA-06 1 10166560 10166560 C T UBE4B Missense_Mutation p.P372L 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-YD-A9TA-06 1 102269731 102269731 G A OLFM3 3'UTR 0.73 TCGA-YD-A9TA-06 1 102269732 102269732 G A OLFM3 3'UTR 0.73 TCGA-YD-A9TA-06 1 103431095 103431095 C T COL11A1 Missense_Mutation p.G955E 0.74 unknown(0) TCGA-YD-A9TA-06 1 103462649 103462649 T C COL11A1 Missense_Mutation p.E743G 0.71 unknown(0) TCGA-YD-A9TA-06 1 103474059 103474059 G A COL11A1 Missense_Mutation p.S548L 0.79 unknown(0) TCGA-YD-A9TA-06 1 103496690 103496690 C T COL11A1 Silent p.Q254Q 0.72 TCGA-YD-A9TA-06 1 103544294 103544294 A C COL11A1 Silent p.V136V 0.74 TCGA-YD-A9TA-06 1 104115858 104115858 C T AMY2B Silent p.I163I 0.67 TCGA-YD-A9TA-06 1 104162178 104162178 C T AMY2A Silent p.V172V 0.79 TCGA-YD-A9TA-06 1 10511539 10511539 G A CORT Missense_Mutation p.E69K 0.77 tolerated(0.11) benign(0.005) TCGA-YD-A9TA-06 1 10708035 10708035 G A CASZ1 Missense_Mutation p.P1107L 0.65 tolerated_low_confidence(0.13) benign(0.008) TCGA-YD-A9TA-06 1 109735430 109735430 G A KIAA1324 Silent p.L627L 0.65 TCGA-YD-A9TA-06 1 109810264 109810264 C T CELSR2 Silent p.F2036F 0.38 TCGA-YD-A9TA-06 1 11007795 11007795 G A C1orf127 Silent p.A799A 0.82 TCGA-YD-A9TA-06 1 110086022 110086022 C T GPR61 Silent p.V126V 0.15 TCGA-YD-A9TA-06 1 11008612 11008612 C T C1orf127 Missense_Mutation p.R527Q 0.19 tolerated(0.47) benign(0.002) TCGA-YD-A9TA-06 1 110086221 110086221 C T GPR61 Missense_Mutation p.P193S 0.49 tolerated(0.8) benign(0.017) TCGA-YD-A9TA-06 1 110155516 110155516 C T GNAT2 5'UTR 0.50 TCGA-YD-A9TA-06 1 110302427 110302427 C T EPS8L3 Missense_Mutation p.R43K 0.21 tolerated(0.4) benign(0.007) TCGA-YD-A9TA-06 1 11090808 11090808 C T MASP2 Missense_Mutation p.D407N 0.69 tolerated(0.67) benign(0.011) TCGA-YD-A9TA-06 1 11105567 11105567 C T MASP2 Missense_Mutation p.E148K 0.19 deleterious(0.04) benign(0.197) TCGA-YD-A9TA-06 1 111773423 111773423 G A CHI3L2 Missense_Mutation p.G44R 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-YD-A9TA-06 1 111773424 111773424 G A CHI3L2 Missense_Mutation p.G44E 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 1 11186825 11186825 G A MTOR Missense_Mutation p.S2127F 0.67 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 1 11189808 11189808 G A MTOR Nonsense_Mutation p.Q1901* 0.13 TCGA-YD-A9TA-06 1 112269472 112269472 G A FAM212B 3'UTR 0.63 TCGA-YD-A9TA-06 1 112999463 112999463 C T CTTNBP2NL Missense_Mutation p.S450L 0.47 deleterious(0.01) possibly_damaging(0.527) TCGA-YD-A9TA-06 1 1139048 1139048 C T TNFRSF18 Missense_Mutation p.G231R 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-YD-A9TA-06 1 114310986 114310986 G A RSBN1 Nonsense_Mutation p.Q562* 0.50 TCGA-YD-A9TA-06 1 114310987 114310987 G C RSBN1 Silent p.L561L 0.51 TCGA-YD-A9TA-06 1 115166224 115166224 G A DENND2C Missense_Mutation p.R283W 0.55 deleterious(0.03) benign(0.021) TCGA-YD-A9TA-06 1 115168001 115168001 T G DENND2C Missense_Mutation p.E202A 0.24 tolerated(0.2) probably_damaging(0.957) TCGA-YD-A9TA-06 1 115168296 115168296 C T DENND2C Missense_Mutation p.D104N 0.22 tolerated(0.34) benign(0.002) TCGA-YD-A9TA-06 1 115168405 115168405 C T DENND2C Silent p.K67K 0.21 TCGA-YD-A9TA-06 1 115275382 115275382 G A CSDE1 Missense_Mutation p.P344L 0.19 tolerated(0.17) benign(0.017) TCGA-YD-A9TA-06 1 115318976 115318976 G A SIKE1 Silent p.A175A 0.42 TCGA-YD-A9TA-06 1 115318977 115318977 G A SIKE1 Missense_Mutation p.A175V 0.42 tolerated(0.3) possibly_damaging(0.623) TCGA-YD-A9TA-06 1 115455656 115455656 T C SYCP1 Missense_Mutation p.L511P 0.20 deleterious(0.02) probably_damaging(0.962) TCGA-YD-A9TA-06 1 115537524 115537524 C T SYCP1 Missense_Mutation p.P939S 0.33 deleterious(0.05) benign(0.004) TCGA-YD-A9TA-06 1 11561796 11561796 C T PTCHD2 Silent p.A249A 0.36 TCGA-YD-A9TA-06 1 11562127 11562127 G A PTCHD2 Missense_Mutation p.D360N 0.13 tolerated(0.12) probably_damaging(0.998) TCGA-YD-A9TA-06 1 11585295 11585295 C T PTCHD2 Missense_Mutation p.L847F 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-YD-A9TA-06 1 11591051 11591051 G A PTCHD2 Missense_Mutation p.E1064K 0.19 tolerated(0.27) benign(0.003) TCGA-YD-A9TA-06 1 116666822 116666822 G A MAB21L3 Missense_Mutation p.G109S 0.47 tolerated(0.18) benign(0.201) TCGA-YD-A9TA-06 1 117119944 117119944 G A IGSF3 Missense_Mutation p.A1212V 0.38 deleterious(0.02) benign(0.014) TCGA-YD-A9TA-06 1 117303207 117303207 G A CD2 Missense_Mutation p.G189E 0.20 tolerated(0.5) benign(0.025) TCGA-YD-A9TA-06 1 118501541 118501541 T G WDR3 Missense_Mutation p.F864C 0.21 tolerated(0.15) probably_damaging(0.962) TCGA-YD-A9TA-06 1 118567870 118567870 T G SPAG17 Silent p.G1300G 0.53 TCGA-YD-A9TA-06 1 118570927 118570927 G A SPAG17 Silent p.L1234L 0.51 TCGA-YD-A9TA-06 1 118629371 118629371 C T SPAG17 Missense_Mutation p.E512K 0.32 tolerated(0.18) benign(0.057) TCGA-YD-A9TA-06 1 118693873 118693873 C G SPAG17 Silent p.S69S 0.15 TCGA-YD-A9TA-06 1 11918493 11918493 C T NPPB Missense_Mutation p.E56K 0.68 tolerated(0.11) possibly_damaging(0.584) TCGA-YD-A9TA-06 1 11982792 11982792 G A KIAA2013 Silent p.F596F 0.24 TCGA-YD-A9TA-06 1 119965222 119965222 C T HSD3B2 Silent p.T366T 0.50 TCGA-YD-A9TA-06 1 120337151 120337151 C T REG4 3'UTR 0.56 TCGA-YD-A9TA-06 1 12034722 12034722 C T PLOD1 Missense_Mutation p.R681W 0.43 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 1 120464949 120464949 G A NOTCH2 Missense_Mutation p.S1708F 0.51 tolerated(0.68) benign(0.002) TCGA-YD-A9TA-06 1 1222486 1222486 C T SCNN1D Intron 0.22 TCGA-YD-A9TA-06 1 12835800 12835800 G A PRAMEF12 Silent p.G134G 0.70 TCGA-YD-A9TA-06 1 12884948 12884948 C T PRAMEF11 Nonsense_Mutation p.W388* 0.15 TCGA-YD-A9TA-06 1 12887149 12887149 G A PRAMEF11 Silent p.N236N 0.18 TCGA-YD-A9TA-06 1 12887185 12887185 G A PRAMEF11 Silent p.F224F 0.58 TCGA-YD-A9TA-06 1 12887411 12887411 C T PRAMEF11 Missense_Mutation p.G149E 0.17 tolerated(0.19) probably_damaging(0.959) TCGA-YD-A9TA-06 1 12888536 12888536 G A PRAMEF11 5'UTR 0.25 TCGA-YD-A9TA-06 1 12907921 12907921 C T HNRNPCL1 Missense_Mutation p.M74I 0.29 tolerated(0.38) benign(0.009) TCGA-YD-A9TA-06 1 12918987 12918987 G A PRAMEF2 Silent p.R41R 0.25 TCGA-YD-A9TA-06 1 12941829 12941829 G A PRAMEF4 Missense_Mutation p.L241F 0.65 deleterious(0.05) probably_damaging(0.951) TCGA-YD-A9TA-06 1 12943122 12943122 C T PRAMEF4 Missense_Mutation p.E32K 0.17 tolerated(0.28) possibly_damaging(0.834) TCGA-YD-A9TA-06 1 12979963 12979963 G A PRAMEF7 Silent p.G385G 0.12 TCGA-YD-A9TA-06 1 13474861 13474861 C T PRAMEF18 Missense_Mutation p.G423D 0.59 deleterious(0.01) benign(0.141) TCGA-YD-A9TA-06 1 142713059 142713059 C T RP11-417J8.6 RNA 0.29 TCGA-YD-A9TA-06 1 142803489 142803489 T C RP11-423O2.5 RNA 0.17 TCGA-YD-A9TA-06 1 144871749 144871749 G A PDE4DIP Missense_Mutation p.S1738F 0.10 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 144871843 144871843 G A PDE4DIP Missense_Mutation p.P1707S 0.17 tolerated(0.13) benign(0.012) TCGA-YD-A9TA-06 1 144886324 144886324 G A PDE4DIP Silent p.V970V 0.17 TCGA-YD-A9TA-06 1 144921838 144921838 G A PDE4DIP Silent p.N397N 0.17 TCGA-YD-A9TA-06 1 145075795 145075795 G A PDE4DIP Missense_Mutation p.S23F 0.14 deleterious_low_confidence(0.02) probably_damaging(0.917) TCGA-YD-A9TA-06 1 145116010 145116010 T G SEC22B RNA 0.12 TCGA-YD-A9TA-06 1 145281375 145281375 A C NOTCH2NL Missense_Mutation p.E102A 0.11 tolerated(0.74) benign(0.034) TCGA-YD-A9TA-06 1 145416592 145416592 G A HFE2 Missense_Mutation p.D313N 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-YD-A9TA-06 1 145696480 145696480 T G CD160 3'UTR 0.46 TCGA-YD-A9TA-06 1 147124301 147124301 C T ACP6 Missense_Mutation p.E278K 0.28 deleterious(0.03) possibly_damaging(0.681) TCGA-YD-A9TA-06 1 147230417 147230417 T G GJA5 Missense_Mutation p.E310D 0.45 tolerated(0.23) benign(0.001) TCGA-YD-A9TA-06 1 147231190 147231190 G A GJA5 Missense_Mutation p.R53W 0.30 deleterious(0.01) possibly_damaging(0.849) TCGA-YD-A9TA-06 1 148341876 148341876 C T NBPF20 Missense_Mutation p.E233K 0.14 possibly_damaging(0.646) TCGA-YD-A9TA-06 1 149762993 149762993 G A FCGR1A Missense_Mutation p.E349K 0.32 tolerated(0.18) benign(0.017) TCGA-YD-A9TA-06 1 149879672 149879672 C T SV2A Missense_Mutation p.G489E 0.38 tolerated(1) benign(0.002) TCGA-YD-A9TA-06 1 149879759 149879759 C T SV2A Splice_Site p.X460_splice 0.32 TCGA-YD-A9TA-06 1 1500120 1500120 G A SSU72 Intron 0.17 TCGA-YD-A9TA-06 1 150483836 150483836 C T ECM1 Intron 0.51 TCGA-YD-A9TA-06 1 150530601 150530601 G A ADAMTSL4 Nonsense_Mutation p.W786* 0.40 TCGA-YD-A9TA-06 1 150936111 150936111 G A SETDB1 Missense_Mutation p.G1188E 0.44 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 151158334 151158334 G A VPS72 Silent p.S70S 0.36 TCGA-YD-A9TA-06 1 151259218 151259218 G A ZNF687 Missense_Mutation p.E151K 0.30 tolerated(0.07) benign(0.034) TCGA-YD-A9TA-06 1 151337053 151337053 G A SELENBP1 Missense_Mutation p.P462L 0.54 deleterious(0.01) probably_damaging(0.919) TCGA-YD-A9TA-06 1 151380935 151380935 G A POGZ Silent p.F728F 0.35 TCGA-YD-A9TA-06 1 151508103 151508103 C A CGN Missense_Mutation p.Q1008K 0.07 deleterious(0) benign(0.393) TCGA-YD-A9TA-06 1 151680000 151680000 G A CELF3 Missense_Mutation p.P252L 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-YD-A9TA-06 1 151680001 151680001 G A CELF3 Missense_Mutation p.P252S 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-YD-A9TA-06 1 151751280 151751280 G A TDRKH Missense_Mutation p.P255L 0.35 tolerated(0.78) benign(0.01) TCGA-YD-A9TA-06 1 151774400 151774400 G A LINGO4 Missense_Mutation p.R261C 0.40 deleterious(0.04) benign(0.439) TCGA-YD-A9TA-06 1 151789697 151789697 C T RORC Missense_Mutation p.G44R 0.26 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 1 152058282 152058282 C T TCHHL1 Missense_Mutation p.E626K 0.42 tolerated(0.08) benign(0.147) TCGA-YD-A9TA-06 1 152058806 152058806 C T TCHHL1 Missense_Mutation p.G451E 0.49 tolerated(0.6) benign(0.114) TCGA-YD-A9TA-06 1 152058956 152058956 C T TCHHL1 Missense_Mutation p.G401E 0.40 tolerated(0.48) benign(0.011) TCGA-YD-A9TA-06 1 152129210 152129210 C T RPTN Missense_Mutation p.R122K 0.38 tolerated(0.3) benign(0.01) TCGA-YD-A9TA-06 1 152185905 152185905 C G HRNR Missense_Mutation p.D2734H 0.46 unknown(0) TCGA-YD-A9TA-06 1 152187666 152187666 C T HRNR Missense_Mutation p.E2147K 0.05 unknown(0) TCGA-YD-A9TA-06 1 152187846 152187846 C T HRNR Missense_Mutation p.G2087S 0.34 unknown(0) TCGA-YD-A9TA-06 1 152276763 152276763 C T FLG Silent p.R3533R 0.31 TCGA-YD-A9TA-06 1 152276950 152276950 C T FLG Missense_Mutation p.G3471E 0.39 unknown(0) TCGA-YD-A9TA-06 1 152278633 152278633 G A FLG Missense_Mutation p.S2910F 0.22 possibly_damaging(0.831) TCGA-YD-A9TA-06 1 152278822 152278822 G A FLG Missense_Mutation p.S2847L 0.25 benign(0.092) TCGA-YD-A9TA-06 1 152280203 152280203 C T FLG Missense_Mutation p.G2387R 0.29 probably_damaging(0.956) TCGA-YD-A9TA-06 1 152281365 152281365 T C FLG Silent p.S1999S 0.37 TCGA-YD-A9TA-06 1 152284798 152284798 G A FLG Missense_Mutation p.S855F 0.41 possibly_damaging(0.804) TCGA-YD-A9TA-06 1 152284826 152284826 C T FLG Missense_Mutation p.G846R 0.38 probably_damaging(0.986) TCGA-YD-A9TA-06 1 152286334 152286334 C T FLG Missense_Mutation p.R343K 0.38 possibly_damaging(0.812) TCGA-YD-A9TA-06 1 152324066 152324066 G A FLG2 Missense_Mutation p.H2066Y 0.41 benign(0.403) TCGA-YD-A9TA-06 1 152325694 152325694 C T FLG2 Missense_Mutation p.G1523D 0.37 probably_damaging(0.918) TCGA-YD-A9TA-06 1 152327451 152327451 T C FLG2 Silent p.Q937Q 0.40 TCGA-YD-A9TA-06 1 152732058 152732058 C T KPRP 5'UTR 0.33 TCGA-YD-A9TA-06 1 152732702 152732702 C T KPRP Missense_Mutation p.S213F 0.42 tolerated(0.09) benign(0.003) TCGA-YD-A9TA-06 1 152733774 152733774 G A KPRP Silent p.V570V 0.44 TCGA-YD-A9TA-06 1 152748936 152748936 C T LCE1F Missense_Mutation p.P30L 0.35 tolerated_low_confidence(0.28) unknown(0) TCGA-YD-A9TA-06 1 153029219 153029219 G A SPRR2A 5'UTR 0.27 TCGA-YD-A9TA-06 1 153043226 153043226 C T SPRR2B Silent p.P30P 0.29 TCGA-YD-A9TA-06 1 153085110 153085110 C T SPRR2F Missense_Mutation p.E34K 0.33 unknown(0) TCGA-YD-A9TA-06 1 153177466 153177466 C T LELP1 Missense_Mutation p.P95S 0.29 unknown(0) TCGA-YD-A9TA-06 1 153315578 153315578 C T PGLYRP4 Missense_Mutation p.G154S 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-YD-A9TA-06 1 153330812 153330812 C T S100A9 Missense_Mutation p.T18I 0.40 tolerated(0.89) benign(0.023) TCGA-YD-A9TA-06 1 153346251 153346251 G A S100A12 3'UTR 0.40 TCGA-YD-A9TA-06 1 153347059 153347059 G A S100A12 Missense_Mutation p.L4F 0.33 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 1 153517133 153517133 C T S100A4 Silent p.L46L 0.45 TCGA-YD-A9TA-06 1 153662323 153662323 C T NPR1 Silent p.L933L 0.48 TCGA-YD-A9TA-06 1 153749665 153749665 C T SLC27A3 Silent p.S382S 0.34 TCGA-YD-A9TA-06 1 153941843 153941843 C T CREB3L4 Missense_Mutation p.S152F 0.39 deleterious(0) benign(0.08) TCGA-YD-A9TA-06 1 154031110 154031110 G A NUP210L Silent p.F970F 0.51 TCGA-YD-A9TA-06 1 154295480 154295480 C T AQP10 Silent p.F85F 0.45 TCGA-YD-A9TA-06 1 154942817 154942817 G A SHC1 Silent p.F62F 0.37 TCGA-YD-A9TA-06 1 155154528 155154528 G C TRIM46 Missense_Mutation p.A597P 0.55 tolerated(0.14) possibly_damaging(0.775) TCGA-YD-A9TA-06 1 155154530 155154530 C T TRIM46 Silent p.A597A 0.55 TCGA-YD-A9TA-06 1 155294292 155294292 C T RUSC1 Intron 0.21 TCGA-YD-A9TA-06 1 156146687 156146687 C T SEMA4A Missense_Mutation p.P729S 0.44 tolerated(0.07) benign(0.039) TCGA-YD-A9TA-06 1 156354392 156354392 G A RHBG Missense_Mutation p.G437S 0.59 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-YD-A9TA-06 1 156437953 156437953 G A MEF2D Silent p.A462A 0.30 TCGA-YD-A9TA-06 1 156437976 156437976 G C MEF2D Missense_Mutation p.P455A 0.21 tolerated(0.43) benign(0.333) TCGA-YD-A9TA-06 1 156642789 156642789 G A NES Silent p.P397P 0.39 TCGA-YD-A9TA-06 1 156756594 156756594 C T PRCC Silent p.T237T 0.27 TCGA-YD-A9TA-06 1 156756880 156756880 C T PRCC Missense_Mutation p.P333S 0.38 tolerated(0.77) benign(0.01) TCGA-YD-A9TA-06 1 156756881 156756881 C T PRCC Missense_Mutation p.P333L 0.39 tolerated(0.74) benign(0.225) TCGA-YD-A9TA-06 1 156821447 156821447 G A INSRR Missense_Mutation p.R359C 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 1 156874549 156874549 C T PEAR1 Silent p.T37T 0.33 TCGA-YD-A9TA-06 1 1572332 1572332 G A CDK11B Missense_Mutation p.S579F 0.61 unknown(0) TCGA-YD-A9TA-06 1 157490903 157490903 G A FCRL5 Missense_Mutation p.L807F 0.30 tolerated(0.06) possibly_damaging(0.78) TCGA-YD-A9TA-06 1 157490954 157490954 C T FCRL5 Missense_Mutation p.D790N 0.33 tolerated(0.67) benign(0.371) TCGA-YD-A9TA-06 1 157522138 157522138 C T FCRL5 Silent p.V5V 0.25 TCGA-YD-A9TA-06 1 157548279 157548279 C T FCRL4 Missense_Mutation p.G472R 0.33 deleterious(0.03) probably_damaging(0.976) TCGA-YD-A9TA-06 1 157556091 157556091 C T FCRL4 Silent p.R334R 0.43 TCGA-YD-A9TA-06 1 157668394 157668394 G A FCRL3 Silent p.L26L 0.39 TCGA-YD-A9TA-06 1 15767019 15767019 T G CTRC Missense_Mutation p.W55G 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-YD-A9TA-06 1 158300619 158300619 C T CD1B Missense_Mutation p.V99I 0.45 tolerated(0.59) benign(0.005) TCGA-YD-A9TA-06 1 158435517 158435517 C T OR10K1 Missense_Mutation p.H56Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 1 158435898 158435898 C T OR10K1 Missense_Mutation p.P183S 0.18 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 1 158436242 158436242 C T OR10K1 Silent p.F297F 0.36 TCGA-YD-A9TA-06 1 158450441 158450441 T A OR10R2 Missense_Mutation p.F258L 0.48 deleterious(0.01) probably_damaging(0.986) TCGA-YD-A9TA-06 1 158576857 158576857 C T OR10Z1 Missense_Mutation p.S210F 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 1 158609393 158609393 C T SPTA1 Silent p.E1653E 0.38 TCGA-YD-A9TA-06 1 158609719 158609719 C T SPTA1 Missense_Mutation p.A1606T 0.36 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 1 158687639 158687639 C G OR6K3 Missense_Mutation p.K89N 0.42 tolerated(0.16) benign(0.01) TCGA-YD-A9TA-06 1 158725608 158725608 C T OR6K6 Nonsense_Mutation p.Q335* 0.36 TCGA-YD-A9TA-06 1 158746511 158746511 G A OR6N2 Silent p.I305I 0.37 TCGA-YD-A9TA-06 1 158746997 158746997 C T OR6N2 Silent p.K143K 0.35 TCGA-YD-A9TA-06 1 158815793 158815793 G A MNDA Silent p.K329K 0.45 TCGA-YD-A9TA-06 1 158946603 158946603 G A PYHIN1 3'UTR 0.25 TCGA-YD-A9TA-06 1 15905487 15905487 C T AGMAT Missense_Mutation p.G196E 0.36 deleterious(0.02) benign(0.21) TCGA-YD-A9TA-06 1 159283861 159283861 C T OR10J3 Missense_Mutation p.E197K 0.38 deleterious(0.01) possibly_damaging(0.513) TCGA-YD-A9TA-06 1 159410082 159410082 C A OR10J1 Silent p.P178P 0.33 TCGA-YD-A9TA-06 1 159505096 159505096 C T OR10J5 Silent p.K234K 0.35 TCGA-YD-A9TA-06 1 159683272 159683272 G A CRP 3'UTR 0.61 TCGA-YD-A9TA-06 1 159907499 159907499 G A IGSF9 Missense_Mutation p.S126F 0.33 deleterious(0) benign(0.372) TCGA-YD-A9TA-06 1 159922302 159922302 G A SLAMF9 Silent p.I138I 0.41 TCGA-YD-A9TA-06 1 160340841 160340841 C T NHLH1 Missense_Mutation p.P107L 0.44 deleterious(0.01) probably_damaging(0.975) TCGA-YD-A9TA-06 1 16046359 16046359 C T PLEKHM2 Missense_Mutation p.S199F 0.37 deleterious(0) possibly_damaging(0.835) TCGA-YD-A9TA-06 1 160519769 160519769 C T CD84 Missense_Mutation p.V304M 0.39 tolerated(0.28) benign(0.115) TCGA-YD-A9TA-06 1 160648819 160648819 C T CD48 3'UTR 0.48 TCGA-YD-A9TA-06 1 160786463 160786463 C T LY9 Silent p.S384S 0.32 TCGA-YD-A9TA-06 1 160797645 160797645 G A LY9 3'UTR 0.42 TCGA-YD-A9TA-06 1 160811569 160811569 C T CD244 Missense_Mutation p.G62R 0.37 tolerated(0.36) benign(0.004) TCGA-YD-A9TA-06 1 16095047 16095047 C T FBLIM1 Nonsense_Mutation p.Q155* 0.56 TCGA-YD-A9TA-06 1 161018572 161018572 C T ARHGAP30 Missense_Mutation p.E747K 0.41 tolerated_low_confidence(0.45) benign(0.008) TCGA-YD-A9TA-06 1 161018731 161018731 C T ARHGAP30 Missense_Mutation p.E694K 0.39 tolerated_low_confidence(0.14) benign(0.004) TCGA-YD-A9TA-06 1 161018930 161018930 C T ARHGAP30 Nonsense_Mutation p.W627* 0.41 TCGA-YD-A9TA-06 1 161042390 161042390 G A PVRL4 3'UTR 0.36 TCGA-YD-A9TA-06 1 16111220 16111220 C T FBLIM1 3'UTR 0.67 TCGA-YD-A9TA-06 1 161178994 161178994 C T NDUFS2 Silent p.Y135Y 0.41 TCGA-YD-A9TA-06 1 161476179 161476179 G A FCGR2A Silent p.Q54Q 0.49 TCGA-YD-A9TA-06 1 161594140 161594140 C T FCGR3B 3'UTR 0.46 TCGA-YD-A9TA-06 1 162326913 162326913 T A NOS1AP Missense_Mutation p.V309E 0.57 deleterious(0) probably_damaging(0.98) TCGA-YD-A9TA-06 1 16245422 16245422 A G SPEN Missense_Mutation p.D466G 0.78 probably_damaging(0.999) TCGA-YD-A9TA-06 1 16376370 16376370 C T CLCNKB Silent p.F309F 0.63 TCGA-YD-A9TA-06 1 16377468 16377468 C T CLCNKB Silent p.P384P 0.29 TCGA-YD-A9TA-06 1 16456903 16456903 G A EPHA2 Silent p.A829A 0.68 TCGA-YD-A9TA-06 1 16464418 16464418 G A EPHA2 Silent p.A414A 0.30 TCGA-YD-A9TA-06 1 166926004 166926004 C T ILDR2 Silent p.G155G 0.42 TCGA-YD-A9TA-06 1 167096834 167096834 C T DUSP27 Silent p.P822P 0.48 TCGA-YD-A9TA-06 1 16727259 16727259 C T SPATA21 Missense_Mutation p.R377Q 0.64 tolerated(0.06) benign(0.418) TCGA-YD-A9TA-06 1 16731538 16731538 C T SPATA21 Silent p.K245K 0.78 TCGA-YD-A9TA-06 1 167384849 167384849 C T POU2F1 Silent p.N701N 0.34 TCGA-YD-A9TA-06 1 167825616 167825616 G A ADCY10 Missense_Mutation p.S653F 0.38 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 1 168670290 168670290 G A DPT Silent p.I168I 0.36 TCGA-YD-A9TA-06 1 169204410 169204410 C T NME7 Missense_Mutation p.E283K 0.44 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 1 169272414 169272414 G A NME7 Missense_Mutation p.H137Y 0.38 tolerated(1) benign(0.002) TCGA-YD-A9TA-06 1 169698340 169698340 G A SELE Silent p.I359I 0.40 TCGA-YD-A9TA-06 1 170695480 170695480 C T PRRX1 Silent p.I179I 0.25 TCGA-YD-A9TA-06 1 170705279 170705279 G A PRRX1 Silent p.K230K 0.33 TCGA-YD-A9TA-06 1 170964574 170964574 G A MROH9 Silent p.R413R 0.36 TCGA-YD-A9TA-06 1 170967493 170967493 C T MROH9 Intron 0.40 TCGA-YD-A9TA-06 1 171227243 171227243 C T FMO1 Missense_Mutation p.A6V 0.41 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 1 171251244 171251244 G A FMO1 Missense_Mutation p.E319K 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-YD-A9TA-06 1 171311073 171311073 G A FMO4 3'UTR 0.33 TCGA-YD-A9TA-06 1 171810927 171810927 A G DNM3 Missense_Mutation p.K44R 0.54 deleterious(0.01) probably_damaging(0.986) TCGA-YD-A9TA-06 1 172526445 172526445 C T SUCO Missense_Mutation p.P157S 0.40 tolerated(0.15) benign(0.021) TCGA-YD-A9TA-06 1 17265405 17265405 C T CROCC Missense_Mutation p.A459V 0.40 probably_damaging(0.977) TCGA-YD-A9TA-06 1 17313120 17313120 G A ATP13A2 Silent p.F1081F 0.20 TCGA-YD-A9TA-06 1 17331950 17331950 G A ATP13A2 Silent p.P69P 0.58 TCGA-YD-A9TA-06 1 173517539 173517539 C T SLC9C2 Missense_Mutation p.E484K 0.36 tolerated(0.11) benign(0.096) TCGA-YD-A9TA-06 1 173556827 173556827 G A SLC9C2 Missense_Mutation p.S167F 0.39 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 1 173593981 173593981 C T ANKRD45 Silent p.Q225Q 0.30 TCGA-YD-A9TA-06 1 173596299 173596299 C T ANKRD45 Splice_Site p.X166_splice 0.38 TCGA-YD-A9TA-06 1 175046567 175046567 G A TNN Missense_Mutation p.E5K 0.38 tolerated_low_confidence(0.25) benign(0.013) TCGA-YD-A9TA-06 1 175049523 175049523 G A TNN Missense_Mutation p.E337K 0.39 tolerated(0.18) benign(0.142) TCGA-YD-A9TA-06 1 175335164 175335164 G A TNR Missense_Mutation p.P722S 0.34 tolerated(0.98) benign(0.255) TCGA-YD-A9TA-06 1 17594413 17594413 C T PADI3 Missense_Mutation p.T203I 0.24 tolerated(0.56) benign(0.021) TCGA-YD-A9TA-06 1 17603053 17603053 C T PADI3 Silent p.F449F 0.15 TCGA-YD-A9TA-06 1 176563850 176563850 T G PAPPA2 Silent p.T370T 0.52 TCGA-YD-A9TA-06 1 176564606 176564606 C T PAPPA2 Silent p.N622N 0.41 TCGA-YD-A9TA-06 1 176675507 176675507 A G PAPPA2 Silent p.E1126E 0.38 TCGA-YD-A9TA-06 1 17681090 17681090 C T PADI4 Silent p.S406S 0.72 TCGA-YD-A9TA-06 1 176905371 176905371 G A ASTN1 Intron 0.38 TCGA-YD-A9TA-06 1 176905372 176905372 G A ASTN1 Intron 0.38 TCGA-YD-A9TA-06 1 177001960 177001960 G A ASTN1 Missense_Mutation p.S166F 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.646) TCGA-YD-A9TA-06 1 177245471 177245471 G A BRINP2 Missense_Mutation p.E305K 0.44 deleterious(0.02) benign(0.023) TCGA-YD-A9TA-06 1 177250692 177250692 G A BRINP2 3'UTR 0.53 TCGA-YD-A9TA-06 1 178854295 178854295 C T RALGPS2 Missense_Mutation p.P330L 0.25 deleterious(0.01) benign(0.008) TCGA-YD-A9TA-06 1 179401421 179401421 C T AXDND1 Missense_Mutation p.P503S 0.21 tolerated(0.44) benign(0.009) TCGA-YD-A9TA-06 1 179401422 179401422 C T AXDND1 Missense_Mutation p.P503L 0.21 tolerated(0.57) benign(0.009) TCGA-YD-A9TA-06 1 179460840 179460840 G A AXDND1 Silent p.R753R 0.39 TCGA-YD-A9TA-06 1 17950983 17950983 C T ARHGEF10L Silent p.F434F 0.18 TCGA-YD-A9TA-06 1 179659968 179659968 C T TDRD5 Missense_Mutation p.L1000F 0.42 tolerated(0.29) benign(0.207) TCGA-YD-A9TA-06 1 180166088 180166088 C T QSOX1 Silent p.S720S 0.48 TCGA-YD-A9TA-06 1 181546997 181546997 G A CACNA1E Missense_Mutation p.G203E 0.33 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 1 181686353 181686353 G A CACNA1E Nonsense_Mutation p.W480* 0.34 TCGA-YD-A9TA-06 1 181702154 181702154 G A CACNA1E Missense_Mutation p.A978T 0.42 tolerated(0.41) benign(0) TCGA-YD-A9TA-06 1 181762816 181762816 G A CACNA1E Missense_Mutation p.E1972K 0.47 deleterious(0.04) benign(0.11) TCGA-YD-A9TA-06 1 182025404 182025404 G A ZNF648 3'UTR 0.21 TCGA-YD-A9TA-06 1 182026293 182026293 C T ZNF648 Missense_Mutation p.G285R 0.46 deleterious(0.04) benign(0.252) TCGA-YD-A9TA-06 1 182369245 182369245 C T TEDDM1 Missense_Mutation p.E126K 0.38 deleterious(0.02) probably_damaging(0.984) TCGA-YD-A9TA-06 1 182369636 182369636 T G TEDDM1 5'UTR 0.48 TCGA-YD-A9TA-06 1 182551267 182551267 G A RNASEL Missense_Mutation p.R565C 0.42 tolerated(0.17) benign(0.002) TCGA-YD-A9TA-06 1 182555609 182555609 G A RNASEL Silent p.F111F 0.39 TCGA-YD-A9TA-06 1 182616004 182616004 C T RGS8 Missense_Mutation p.E155K 0.45 tolerated(0.23) benign(0.086) TCGA-YD-A9TA-06 1 182908441 182908441 C T SHCBP1L Missense_Mutation p.E316K 0.39 tolerated(0.45) possibly_damaging(0.858) TCGA-YD-A9TA-06 1 183247753 183247753 G A NMNAT2 Silent p.L196L 0.36 TCGA-YD-A9TA-06 1 183542396 183542396 G A NCF2 Missense_Mutation p.P178L 0.42 tolerated(0.07) probably_damaging(0.999) TCGA-YD-A9TA-06 1 183617209 183617209 T C APOBEC4 Silent p.K236K 0.39 TCGA-YD-A9TA-06 1 184764605 184764605 C T FAM129A Missense_Mutation p.E765K 0.42 tolerated_low_confidence(0.06) benign(0.316) TCGA-YD-A9TA-06 1 186063464 186063464 G A HMCN1 Missense_Mutation p.R3418K 0.41 probably_damaging(0.982) TCGA-YD-A9TA-06 1 186277117 186277117 G A PRG4 Missense_Mutation p.G756R 0.43 unknown(0) TCGA-YD-A9TA-06 1 186277443 186277443 G A PRG4 Silent p.K864K 0.33 TCGA-YD-A9TA-06 1 186313212 186313212 G A TPR Missense_Mutation p.S1143F 0.25 benign(0.024) TCGA-YD-A9TA-06 1 186862157 186862157 C T PLA2G4A Missense_Mutation p.P44S 0.45 tolerated(0.06) probably_damaging(1) TCGA-YD-A9TA-06 1 18808729 18808729 C T KLHDC7A Silent p.I418I 0.39 TCGA-YD-A9TA-06 1 18960838 18960838 G A PAX7 Missense_Mutation p.G43R 0.08 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 190067310 190067310 G A BRINP3 Silent p.L713L 0.42 TCGA-YD-A9TA-06 1 190067770 190067770 G A BRINP3 Missense_Mutation p.T560I 0.45 tolerated(0.07) probably_damaging(0.996) TCGA-YD-A9TA-06 1 19186112 19186112 G A TAS1R2 Silent p.L15L 0.13 TCGA-YD-A9TA-06 1 192153662 192153662 C T RGS18 Missense_Mutation p.S229L 0.41 deleterious(0.01) possibly_damaging(0.642) TCGA-YD-A9TA-06 1 192544995 192544995 G A RGS1 Missense_Mutation p.E25K 0.46 tolerated(0.26) benign(0.069) TCGA-YD-A9TA-06 1 193053764 193053764 C T TROVE2 Missense_Mutation p.T507I 0.36 deleterious(0) possibly_damaging(0.721) TCGA-YD-A9TA-06 1 193053765 193053765 C T TROVE2 Silent p.T507T 0.36 TCGA-YD-A9TA-06 1 19467911 19467911 G A UBR4 Silent p.I2806I 0.67 TCGA-YD-A9TA-06 1 196205198 196205198 C T KCNT2 Missense_Mutation p.E1072K 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-YD-A9TA-06 1 196706644 196706644 G A CFH Missense_Mutation p.G879E 0.45 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 1 196758776 196758776 C T CFHR3 Intron 0.37 TCGA-YD-A9TA-06 1 196946809 196946809 C T CFHR5 Silent p.F5F 0.36 TCGA-YD-A9TA-06 1 196973913 196973913 C T CFHR5 Nonsense_Mutation p.Q485* 0.40 TCGA-YD-A9TA-06 1 197009844 197009844 G A F13B Missense_Mutation p.T587I 0.34 tolerated(0.2) benign(0.001) TCGA-YD-A9TA-06 1 197020010 197020010 C T F13B Splice_Site p.X519_splice 0.42 TCGA-YD-A9TA-06 1 197404158 197404158 G A CRB1 Silent p.V1055V 0.46 TCGA-YD-A9TA-06 1 197404199 197404199 G A CRB1 Missense_Mutation p.G1069E 0.27 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 198492572 198492572 C T ATP6V1G3 Missense_Mutation p.M102I 0.38 tolerated(0.14) benign(0.004) TCGA-YD-A9TA-06 1 198682160 198682160 G A PTPRC Missense_Mutation p.R417K 0.35 tolerated(0.9) benign(0.004) TCGA-YD-A9TA-06 1 200017500 200017500 G A NR5A2 Missense_Mutation p.G222S 0.36 tolerated(0.15) benign(0.053) TCGA-YD-A9TA-06 1 200826911 200826911 C T CAMSAP2 Silent p.F1387F 0.44 TCGA-YD-A9TA-06 1 200877860 200877860 G A C1orf106 Missense_Mutation p.E193K 0.52 tolerated(0.07) possibly_damaging(0.457) TCGA-YD-A9TA-06 1 201039481 201039481 G A CACNA1S Missense_Mutation p.P760L 0.42 tolerated(0.09) probably_damaging(0.931) TCGA-YD-A9TA-06 1 201252823 201252823 C A PKP1 5'UTR 0.43 TCGA-YD-A9TA-06 1 201330293 201330293 G A TNNT2 Intron 0.10 TCGA-YD-A9TA-06 1 201356074 201356074 C T LAD1 Missense_Mutation p.E139K 0.21 tolerated(0.33) benign(0.14) TCGA-YD-A9TA-06 1 201844338 201844338 C T IPO9 Silent p.L999L 0.46 TCGA-YD-A9TA-06 1 202407106 202407106 C T PPP1R12B Missense_Mutation p.S471F 0.38 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 1 203134452 203134452 C T ADORA1 Silent p.S135S 0.43 TCGA-YD-A9TA-06 1 204135428 204135428 C T REN 5'UTR 0.44 TCGA-YD-A9TA-06 1 204226853 204226853 G C PLEKHA6 Missense_Mutation p.S384R 0.57 tolerated(0.09) possibly_damaging(0.863) TCGA-YD-A9TA-06 1 204242792 204242792 T G PLEKHA6 Missense_Mutation p.M22L 0.17 tolerated(0.22) probably_damaging(0.989) TCGA-YD-A9TA-06 1 204413465 204413465 C T PIK3C2B Silent p.L922L 0.58 TCGA-YD-A9TA-06 1 204587453 204587453 G A LRRN2 Silent p.L556L 0.18 TCGA-YD-A9TA-06 1 204981991 204981991 A G NFASC Missense_Mutation p.Y1163C 0.23 deleterious(0) unknown(0) TCGA-YD-A9TA-06 1 205022281 205022281 C T CNTN2 5'UTR 0.63 TCGA-YD-A9TA-06 1 205569611 205569611 G A MFSD4 3'UTR 0.25 TCGA-YD-A9TA-06 1 205633703 205633703 G A SLC45A3 Silent p.L28L 0.57 TCGA-YD-A9TA-06 1 205633704 205633704 G A SLC45A3 Silent p.G27G 0.56 TCGA-YD-A9TA-06 1 205893592 205893592 G A SLC26A9 Missense_Mutation p.S472F 0.15 deleterious(0.03) possibly_damaging(0.853) TCGA-YD-A9TA-06 1 206318401 206318401 G C CTSE Missense_Mutation p.M53I 0.15 tolerated(0.27) benign(0.216) TCGA-YD-A9TA-06 1 207104867 207104867 G A PIGR Missense_Mutation p.T725I 0.57 tolerated(0.36) benign(0.012) TCGA-YD-A9TA-06 1 207106440 207106440 C T PIGR Missense_Mutation p.E593K 0.26 tolerated(0.42) benign(0.005) TCGA-YD-A9TA-06 1 207106441 207106441 C T PIGR Silent p.R592R 0.27 TCGA-YD-A9TA-06 1 207649738 207649738 G A CR2 Nonsense_Mutation p.W959* 0.61 TCGA-YD-A9TA-06 1 207867826 207867826 G A CR1L Missense_Mutation p.E198K 0.25 deleterious(0.01) benign(0.271) TCGA-YD-A9TA-06 1 207890948 207890948 G A CR1L Silent p.G518G 0.16 TCGA-YD-A9TA-06 1 207890949 207890949 G T CR1L Nonsense_Mutation p.E519* 0.16 TCGA-YD-A9TA-06 1 208061402 208061402 G A CD34 Intron 0.23 TCGA-YD-A9TA-06 1 208061429 208061429 C T CD34 Intron 0.72 TCGA-YD-A9TA-06 1 209933607 209933607 G A TRAF3IP3 Missense_Mutation p.E75K 0.62 tolerated(0.11) benign(0.081) TCGA-YD-A9TA-06 1 209956436 209956436 G A C1orf74 Missense_Mutation p.P182S 0.56 tolerated(0.98) benign(0.028) TCGA-YD-A9TA-06 1 209968735 209968735 C T IRF6 Silent p.E136E 0.24 TCGA-YD-A9TA-06 1 20996920 20996920 C T KIF17 Silent p.P929P 0.19 TCGA-YD-A9TA-06 1 211654655 211654655 C T RD3 Missense_Mutation p.G35R 0.54 tolerated(0.09) possibly_damaging(0.73) TCGA-YD-A9TA-06 1 211840470 211840470 G A NEK2 Silent p.F363F 0.23 TCGA-YD-A9TA-06 1 212799308 212799308 C T FAM71A Silent p.S363S 0.63 TCGA-YD-A9TA-06 1 213061837 213061837 C T FLVCR1 Silent p.F438F 0.47 TCGA-YD-A9TA-06 1 21546417 21546417 C T ECE1 3'UTR 0.67 TCGA-YD-A9TA-06 1 215901660 215901660 C T USH2A Missense_Mutation p.M3926I 0.11 benign(0) TCGA-YD-A9TA-06 1 215960083 215960083 G A USH2A Missense_Mutation p.S3439L 0.76 benign(0.003) TCGA-YD-A9TA-06 1 216680239 216680239 C T ESRRG 3'UTR 0.59 TCGA-YD-A9TA-06 1 21804611 21804611 C T NBPF3 Intron 0.26 TCGA-YD-A9TA-06 1 220170329 220170329 G A EPRS Missense_Mutation p.P846L 0.65 tolerated(0.09) benign(0.009) TCGA-YD-A9TA-06 1 220276107 220276107 T C IARS2 Missense_Mutation p.M313T 0.22 tolerated(1) benign(0.144) TCGA-YD-A9TA-06 1 222712076 222712076 C T HHIPL2 Silent p.G497G 0.70 TCGA-YD-A9TA-06 1 223465954 223465954 G A SUSD4 Missense_Mutation p.P63L 0.26 deleterious(0.04) benign(0.198) TCGA-YD-A9TA-06 1 228491558 228491558 C T OBSCN Missense_Mutation p.R4641C 0.79 probably_damaging(0.973) TCGA-YD-A9TA-06 1 228558860 228558860 C T OBSCN Missense_Mutation p.S7751F 0.84 probably_damaging(0.992) TCGA-YD-A9TA-06 1 229738467 229738467 G A TAF5L Silent p.I149I 0.53 TCGA-YD-A9TA-06 1 23111486 23111486 G A EPHB2 Missense_Mutation p.G243E 0.63 tolerated(0.24) benign(0.426) TCGA-YD-A9TA-06 1 231362570 231362570 G A C1orf131 Missense_Mutation p.P203L 0.77 deleterious(0.03) probably_damaging(0.983) TCGA-YD-A9TA-06 1 233120125 233120125 G A PCNXL2 Silent p.V2113V 0.43 TCGA-YD-A9TA-06 1 233190176 233190176 G A PCNXL2 Missense_Mutation p.L1397F 0.81 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 233398825 233398825 G A PCNXL2 Missense_Mutation p.R80C 0.70 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 1 233490655 233490655 G A MLK4 Silent p.G403G 0.77 TCGA-YD-A9TA-06 1 234452365 234452365 C T SLC35F3 Silent p.L282L 0.77 TCGA-YD-A9TA-06 1 23520034 23520034 G A HTR1D Missense_Mutation p.R227C 0.82 deleterious(0) probably_damaging(0.937) TCGA-YD-A9TA-06 1 236187440 236187440 G A NID1 Silent p.R686R 0.84 TCGA-YD-A9TA-06 1 23689350 23689350 G A ZNF436 Silent p.F175F 0.15 TCGA-YD-A9TA-06 1 236900497 236900497 G A ACTN2 Missense_Mutation p.E287K 0.78 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 1 236973836 236973836 C T MTR Missense_Mutation p.P148L 0.77 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 238048822 238048822 C T ZP4 Silent p.R343R 0.82 TCGA-YD-A9TA-06 1 238048823 238048823 C T ZP4 Missense_Mutation p.R343Q 0.82 tolerated(0.16) benign(0.376) TCGA-YD-A9TA-06 1 24201345 24201345 G A CNR2 Missense_Mutation p.L255F 0.14 tolerated(0.34) benign(0.009) TCGA-YD-A9TA-06 1 242264030 242264030 G A PLD5 Missense_Mutation p.H432Y 0.72 tolerated(1) benign(0.034) TCGA-YD-A9TA-06 1 242277306 242277306 G A PLD5 Missense_Mutation p.P319L 0.73 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 1 24390596 24390596 C T MYOM3 Silent p.G1196G 0.77 TCGA-YD-A9TA-06 1 24454644 24454644 C T IL22RA1 Silent p.V219V 0.66 TCGA-YD-A9TA-06 1 2451812 2451812 G A PANK4 Silent p.S216S 0.14 TCGA-YD-A9TA-06 1 2451813 2451813 G A PANK4 Missense_Mutation p.S216F 0.12 deleterious(0) probably_damaging(0.981) TCGA-YD-A9TA-06 1 246810500 246810500 C T CNST Silent p.L333L 0.83 TCGA-YD-A9TA-06 1 24795704 24795704 C T NIPAL3 3'UTR 0.63 TCGA-YD-A9TA-06 1 248004245 248004245 C T OR11L1 Silent p.R318R 0.24 TCGA-YD-A9TA-06 1 248039404 248039404 G A TRIM58 Nonsense_Mutation p.W358* 0.73 TCGA-YD-A9TA-06 1 248224278 248224278 C T OR2L3 Nonsense_Mutation p.Q99* 0.75 TCGA-YD-A9TA-06 1 248344033 248344033 G A OR2M2 Missense_Mutation p.G249E 0.81 deleterious(0.01) probably_damaging(0.984) TCGA-YD-A9TA-06 1 248436493 248436493 G A OR2T33 Silent p.P208P 0.61 TCGA-YD-A9TA-06 1 248436537 248436537 C T OR2T33 Missense_Mutation p.E194K 0.60 deleterious(0.01) probably_damaging(0.982) TCGA-YD-A9TA-06 1 248685422 248685422 C T OR2G6 Nonsense_Mutation p.Q159* 0.85 TCGA-YD-A9TA-06 1 248756191 248756191 C T OR2T10 Silent p.R293R 0.49 TCGA-YD-A9TA-06 1 248789674 248789674 G A OR2T11 Silent p.A252A 0.53 TCGA-YD-A9TA-06 1 248845069 248845069 G A OR14I1 Silent p.I179I 0.84 TCGA-YD-A9TA-06 1 248845527 248845527 C T OR14I1 Missense_Mutation p.G27R 0.65 deleterious(0.02) benign(0.045) TCGA-YD-A9TA-06 1 24921936 24921936 C T NCMAP Silent p.T5T 0.13 TCGA-YD-A9TA-06 1 25245806 25245806 A G RUNX3 Missense_Mutation p.F171L 0.07 tolerated(0.05) probably_damaging(0.997) TCGA-YD-A9TA-06 1 26308927 26308927 G A PAFAH2 Silent p.I198I 0.15 TCGA-YD-A9TA-06 1 26527385 26527385 C T CATSPER4 Missense_Mutation p.S351L 0.68 tolerated(0.67) benign(0.001) TCGA-YD-A9TA-06 1 26691599 26691599 G A ZNF683 Silent p.P146P 0.30 TCGA-YD-A9TA-06 1 26786620 26786620 C T DHDDS Silent p.N250N 0.29 TCGA-YD-A9TA-06 1 27190183 27190183 G A SFN Silent p.K160K 0.25 TCGA-YD-A9TA-06 1 27190184 27190184 G A SFN Missense_Mutation p.E161K 0.25 tolerated_low_confidence(0.11) benign(0.181) TCGA-YD-A9TA-06 1 27278363 27278363 G A C1orf172 Missense_Mutation p.P170L 0.63 deleterious(0.03) probably_damaging(0.999) TCGA-YD-A9TA-06 1 27706474 27706474 G A CD164L2 3'UTR 0.68 TCGA-YD-A9TA-06 1 28206353 28206353 G T THEMIS2 Missense_Mutation p.R145L 0.10 deleterious(0.03) probably_damaging(0.93) TCGA-YD-A9TA-06 1 28282750 28282750 G A SMPDL3B Intron 0.21 TCGA-YD-A9TA-06 1 28661054 28661054 C A MED18 Missense_Mutation p.P67Q 0.74 deleterious(0.04) possibly_damaging(0.644) TCGA-YD-A9TA-06 1 28930072 28930072 G A TAF12 Silent p.I155I 0.28 TCGA-YD-A9TA-06 1 29185611 29185611 C T OPRD1 Missense_Mutation p.L125F 0.67 tolerated(0.09) benign(0.064) TCGA-YD-A9TA-06 1 29189331 29189331 C T OPRD1 Missense_Mutation p.L219F 0.12 tolerated(0.09) benign(0.344) TCGA-YD-A9TA-06 1 32196659 32196659 G A BAI2 Silent p.P1374P 0.25 TCGA-YD-A9TA-06 1 32196660 32196660 G A BAI2 Missense_Mutation p.P1374L 0.23 tolerated(0.09) benign(0.018) TCGA-YD-A9TA-06 1 32262266 32262266 G A SPOCD1 Silent p.A732A 0.67 TCGA-YD-A9TA-06 1 32829316 32829316 A T TSSK3 Missense_Mutation p.E89V 0.16 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 1 33235891 33235891 C T KIAA1522 Missense_Mutation p.R371C 0.63 deleterious(0) unknown(0) TCGA-YD-A9TA-06 1 33999416 33999416 C T CSMD2 Missense_Mutation p.G3180E 0.67 deleterious(0) benign(0.314) TCGA-YD-A9TA-06 1 34033383 34033383 G A CSMD2 Intron 0.73 TCGA-YD-A9TA-06 1 34090722 34090722 G A CSMD2 Missense_Mutation p.S1770L 0.15 deleterious(0) possibly_damaging(0.871) TCGA-YD-A9TA-06 1 34174746 34174746 C T CSMD2 Silent p.G1133G 0.65 TCGA-YD-A9TA-06 1 34192235 34192235 C T CSMD2 Missense_Mutation p.G767D 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 35227533 35227533 C T GJB4 Silent p.C226C 0.66 TCGA-YD-A9TA-06 1 35260872 35260872 G A GJA4 3'UTR 0.79 TCGA-YD-A9TA-06 1 35334209 35334209 C T DLGAP3 Missense_Mutation p.E828K 0.12 deleterious(0) possibly_damaging(0.652) TCGA-YD-A9TA-06 1 35351820 35351820 G A DLGAP3 Nonsense_Mutation p.Q485* 0.47 TCGA-YD-A9TA-06 1 35365847 35365847 G A DLGAP3 Missense_Mutation p.P379S 0.15 tolerated(0.41) benign(0.3) TCGA-YD-A9TA-06 1 35370462 35370462 G A DLGAP3 Missense_Mutation p.H175Y 0.16 deleterious(0) probably_damaging(0.932) TCGA-YD-A9TA-06 1 35580515 35580516 - T ZMYM1 Frame_Shift_Ins p.Y1030Lfs*8 0.12 TCGA-YD-A9TA-06 1 36479318 36479318 G A AGO3 Missense_Mutation p.V413I 0.34 tolerated(0.33) benign(0.031) TCGA-YD-A9TA-06 1 36552639 36552639 T C TEKT2 Missense_Mutation p.I247T 0.88 deleterious(0.02) possibly_damaging(0.882) TCGA-YD-A9TA-06 1 36553150 36553150 C T TEKT2 Silent p.T322T 0.15 TCGA-YD-A9TA-06 1 36564717 36564717 C T COL8A2 Missense_Mutation p.E189K 0.39 tolerated(0.12) unknown(0) TCGA-YD-A9TA-06 1 36933753 36933753 G A CSF3R Missense_Mutation p.P549L 0.63 deleterious(0.02) probably_damaging(0.94) TCGA-YD-A9TA-06 1 3756268 3756268 G A CEP104 Silent p.I213I 0.23 TCGA-YD-A9TA-06 1 38006065 38006065 G A SNIP1 Missense_Mutation p.P207S 0.17 tolerated(0.11) benign(0.011) TCGA-YD-A9TA-06 1 38189043 38189043 G A EPHA10 Missense_Mutation p.P592S 0.09 tolerated(0.45) benign(0.379) TCGA-YD-A9TA-06 1 38305589 38305589 G A MTF1 Intron 0.72 TCGA-YD-A9TA-06 1 39853887 39853887 C T MACF1 Missense_Mutation p.H3063Y 0.40 possibly_damaging(0.514) TCGA-YD-A9TA-06 1 39878604 39878604 C T KIAA0754 Silent p.V753V 0.86 TCGA-YD-A9TA-06 1 39878981 39878981 C T KIAA0754 Missense_Mutation p.S879F 0.15 possibly_damaging(0.449) TCGA-YD-A9TA-06 1 40092734 40092734 G - HEYL Frame_Shift_Del p.V145Sfs*45 0.39 TCGA-YD-A9TA-06 1 40148368 40148368 C T HPCAL4 Missense_Mutation p.R139H 0.24 deleterious(0.02) possibly_damaging(0.76) TCGA-YD-A9TA-06 1 40149771 40149771 G A HPCAL4 Silent p.F72F 0.46 TCGA-YD-A9TA-06 1 40980569 40980569 C T EXO5 Missense_Mutation p.A118V 0.35 deleterious(0.03) benign(0.034) TCGA-YD-A9TA-06 1 41092223 41092223 G A RIMS3 Missense_Mutation p.S298F 0.20 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-YD-A9TA-06 1 41296814 41296814 C T KCNQ4 Missense_Mutation p.P451S 0.40 tolerated(0.19) benign(0.007) TCGA-YD-A9TA-06 1 41303363 41303363 C T KCNQ4 Missense_Mutation p.P591L 0.18 deleterious(0) benign(0.005) TCGA-YD-A9TA-06 1 41976501 41976501 G A HIVEP3 Missense_Mutation p.T2281I 0.29 possibly_damaging(0.621) TCGA-YD-A9TA-06 1 42628553 42628553 G A GUCA2A 3'UTR 0.69 TCGA-YD-A9TA-06 1 43647246 43647246 C T WDR65 Missense_Mutation p.P67S 0.45 tolerated(0.1) benign(0.395) TCGA-YD-A9TA-06 1 43748489 43748489 C T C1orf210 Silent p.G103G 0.46 TCGA-YD-A9TA-06 1 43770734 43770734 C T TIE1 Missense_Mutation p.R91C 0.25 deleterious(0) possibly_damaging(0.614) TCGA-YD-A9TA-06 1 43783679 43783679 C T TIE1 Missense_Mutation p.S953F 0.50 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 44069433 44069433 C T PTPRF Silent p.F870F 0.29 TCGA-YD-A9TA-06 1 44128616 44128616 G A KDM4A Missense_Mutation p.E161K 0.45 deleterious(0) possibly_damaging(0.879) TCGA-YD-A9TA-06 1 44435804 44435804 C T DPH2 5'UTR 0.16 TCGA-YD-A9TA-06 1 44443613 44443613 C T ATP6V0B Intron 0.24 TCGA-YD-A9TA-06 1 44595324 44595324 C T KLF17 Silent p.F127F 0.55 TCGA-YD-A9TA-06 1 45288167 45288167 G A PTCH2 Missense_Mutation p.P1178S 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-YD-A9TA-06 1 45293252 45293252 G A PTCH2 Silent p.L731L 0.31 TCGA-YD-A9TA-06 1 45474072 45474072 G A HECTD3 Intron 0.26 TCGA-YD-A9TA-06 1 46124770 46124770 T C GPBP1L1 5'UTR 0.17 TCGA-YD-A9TA-06 1 46663506 46663506 G A POMGNT1 5'UTR 0.12 TCGA-YD-A9TA-06 1 46810805 46810805 C T NSUN4 Silent p.F142F 0.18 TCGA-YD-A9TA-06 1 46876082 46876082 C T FAAH Silent p.F396F 0.13 TCGA-YD-A9TA-06 1 47398263 47398263 C T CYP4A11 Intron 0.23 TCGA-YD-A9TA-06 1 47398337 47398337 A C CYP4A11 Intron 0.17 TCGA-YD-A9TA-06 1 47610294 47610294 G A CYP4A22 Missense_Mutation p.D324N 0.08 deleterious(0.02) possibly_damaging(0.665) TCGA-YD-A9TA-06 1 47765747 47765747 G A STIL Silent p.S177S 0.28 TCGA-YD-A9TA-06 1 51770795 51770795 C T TTC39A Silent p.R208R 0.24 TCGA-YD-A9TA-06 1 52821457 52821457 A G CC2D1B Missense_Mutation p.L711P 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 52871432 52871432 C T PRPF38A Silent p.L71L 0.48 TCGA-YD-A9TA-06 1 53282223 53282223 C T ZYG11B Missense_Mutation p.P656S 0.24 deleterious(0.03) benign(0.431) TCGA-YD-A9TA-06 1 53558377 53558377 C T SLC1A7 Missense_Mutation p.G294S 0.61 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TA-06 1 53580490 53580490 G A SLC1A7 Missense_Mutation p.T124I 0.41 tolerated(0.18) benign(0.003) TCGA-YD-A9TA-06 1 55134611 55134611 G C MROH7 Splice_Site p.X463_splice 0.17 TCGA-YD-A9TA-06 1 55152105 55152105 C T MROH7 Missense_Mutation p.P899S 0.52 tolerated(0.54) benign(0.001) TCGA-YD-A9TA-06 1 55566583 55566583 G A USP24 Nonsense_Mutation p.Q1734* 0.24 TCGA-YD-A9TA-06 1 57161728 57161728 G A PRKAA2 Silent p.G228G 0.56 TCGA-YD-A9TA-06 1 57170075 57170075 G A PRKAA2 Missense_Mutation p.R407Q 0.26 tolerated(0.38) probably_damaging(0.998) TCGA-YD-A9TA-06 1 57257917 57257917 C T C1orf168 Missense_Mutation p.G190E 0.23 tolerated(0.91) benign(0.027) TCGA-YD-A9TA-06 1 57489299 57489299 G A DAB1 Missense_Mutation p.P267L 0.27 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 6008165 6008165 G A NPHP4 Silent p.S319S 0.41 TCGA-YD-A9TA-06 1 6155394 6155394 C T KCNAB2 Silent p.S248S 0.18 TCGA-YD-A9TA-06 1 6172981 6172981 C T CHD5 Missense_Mutation p.E1664K 0.16 tolerated(0.4) benign(0.001) TCGA-YD-A9TA-06 1 6203950 6203950 A G CHD5 Missense_Mutation p.L659P 0.35 tolerated(0.12) benign(0.029) TCGA-YD-A9TA-06 1 6214802 6214802 G A CHD5 Silent p.T221T 0.17 TCGA-YD-A9TA-06 1 62740713 62740713 C T KANK4 Silent p.K21K 0.45 TCGA-YD-A9TA-06 1 62740733 62740733 C T KANK4 Missense_Mutation p.E15K 0.28 tolerated(0.11) possibly_damaging(0.684) TCGA-YD-A9TA-06 1 64605897 64605897 C T ROR1 Missense_Mutation p.S239L 0.54 tolerated(0.06) possibly_damaging(0.555) TCGA-YD-A9TA-06 1 64606085 64606085 C T ROR1 Missense_Mutation p.P302S 0.54 tolerated(0.05) probably_damaging(0.988) TCGA-YD-A9TA-06 1 6505797 6505797 G A ESPN Silent p.R422R 0.30 TCGA-YD-A9TA-06 1 6520194 6520194 C T ESPN Silent p.I851I 0.62 TCGA-YD-A9TA-06 1 6535581 6535581 C T PLEKHG5 Missense_Mutation p.D130N 0.20 deleterious(0.01) possibly_damaging(0.642) TCGA-YD-A9TA-06 1 6535582 6535582 C G PLEKHG5 Silent p.G129G 0.20 TCGA-YD-A9TA-06 1 6536083 6536083 G A PLEKHG5 Silent p.A98A 0.40 TCGA-YD-A9TA-06 1 6586838 6586838 G A NOL9 Missense_Mutation p.P626L 0.10 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 1 6586839 6586839 G A NOL9 Missense_Mutation p.P626S 0.10 deleterious(0.02) probably_damaging(0.98) TCGA-YD-A9TA-06 1 67242082 67242082 C T TCTEX1D1 Missense_Mutation p.S111F 0.09 deleterious(0) probably_damaging(0.971) TCGA-YD-A9TA-06 1 67648533 67648533 C T IL23R Missense_Mutation p.P128S 0.57 deleterious(0) probably_damaging(0.932) TCGA-YD-A9TA-06 1 68955173 68955173 G A DEPDC1 Missense_Mutation p.R145C 0.32 deleterious(0.04) benign(0.028) TCGA-YD-A9TA-06 1 70493873 70493873 G A LRRC7 Missense_Mutation p.R567Q 0.44 deleterious(0.04) probably_damaging(0.99) TCGA-YD-A9TA-06 1 71318500 71318500 G A PTGER3 3'UTR 0.65 TCGA-YD-A9TA-06 1 72058600 72058600 G A NEGR1 Silent p.S280S 0.49 TCGA-YD-A9TA-06 1 74492516 74492516 G A LRRIQ3 Missense_Mutation p.P619L 0.42 deleterious(0) benign(0.089) TCGA-YD-A9TA-06 1 74492517 74492517 G A LRRIQ3 Missense_Mutation p.P619S 0.42 deleterious(0.05) possibly_damaging(0.541) TCGA-YD-A9TA-06 1 74819780 74819780 G A FPGT-TNNI3K Missense_Mutation p.E496K 0.56 tolerated(0.14) probably_damaging(0.994) TCGA-YD-A9TA-06 1 75037837 75037837 C T C1orf173 Missense_Mutation p.R1186K 0.45 tolerated(1) benign(0.053) TCGA-YD-A9TA-06 1 75038642 75038642 C T C1orf173 Missense_Mutation p.E918K 0.30 deleterious(0.01) benign(0.436) TCGA-YD-A9TA-06 1 75679658 75679658 C T SLC44A5 Missense_Mutation p.E607K 0.20 tolerated(1) benign(0.013) TCGA-YD-A9TA-06 1 76877947 76877947 A T ST6GALNAC3 Silent p.G156G 0.59 TCGA-YD-A9TA-06 1 7724616 7724616 C T CAMTA1 Missense_Mutation p.S670F 0.64 tolerated_low_confidence(0.11) possibly_damaging(0.766) TCGA-YD-A9TA-06 1 77528955 77528955 T G ST6GALNAC5 3'UTR 0.25 TCGA-YD-A9TA-06 1 7796511 7796511 C T CAMTA1 Silent p.I1058I 0.26 TCGA-YD-A9TA-06 1 7796512 7796512 C T CAMTA1 Missense_Mutation p.H1059Y 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-YD-A9TA-06 1 78034122 78034122 C A ZZZ3 Missense_Mutation p.R787S 0.25 deleterious(0.01) possibly_damaging(0.859) TCGA-YD-A9TA-06 1 7890092 7890092 C T PER3 Missense_Mutation p.H1020Y 0.15 tolerated_low_confidence(0.45) benign(0.303) TCGA-YD-A9TA-06 1 78958855 78958855 C T PTGFR Missense_Mutation p.H143Y 0.20 deleterious(0) possibly_damaging(0.863) TCGA-YD-A9TA-06 1 79383735 79383735 G A ELTD1 Missense_Mutation p.L488F 0.22 deleterious(0) probably_damaging(0.987) TCGA-YD-A9TA-06 1 7995116 7995116 C T TNFRSF9 Silent p.P167P 0.65 TCGA-YD-A9TA-06 1 8022900 8022900 A G PARK7 Missense_Mutation p.T19A 0.09 tolerated(0.71) benign(0.003) TCGA-YD-A9TA-06 1 85130205 85130205 G A SSX2IP Nonsense_Mutation p.R190* 0.48 TCGA-YD-A9TA-06 1 85279804 85279804 C T LPAR3 Missense_Mutation p.G263S 0.19 deleterious(0.04) probably_damaging(0.982) TCGA-YD-A9TA-06 1 86167936 86167936 A G ZNHIT6 Missense_Mutation p.F308S 0.10 tolerated(0.11) benign(0.25) TCGA-YD-A9TA-06 1 86308057 86308057 C T COL24A1 Missense_Mutation p.G1161E 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 86512516 86512516 C T COL24A1 Missense_Mutation p.G648R 0.14 deleterious(0) probably_damaging(0.984) TCGA-YD-A9TA-06 1 87025634 87025634 C T CLCA4 Missense_Mutation p.S60F 0.23 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 1 87031642 87031642 C T CLCA4 Missense_Mutation p.S298L 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-YD-A9TA-06 1 87033304 87033304 C T CLCA4 Silent p.S384S 0.24 TCGA-YD-A9TA-06 1 87041109 87041109 C T CLCA4 Missense_Mutation p.P593L 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 87101283 87101283 G A RP4-651E10.4 Intron 0.38 TCGA-YD-A9TA-06 1 89522551 89522551 G A GBP1 Nonsense_Mutation p.Q381* 0.51 TCGA-YD-A9TA-06 1 89732662 89732662 C T GBP5 Silent p.E201E 0.46 TCGA-YD-A9TA-06 1 89876039 89876039 G A GBP1P1 RNA 0.49 TCGA-YD-A9TA-06 1 90473056 90473056 C T ZNF326 Missense_Mutation p.S121F 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-YD-A9TA-06 1 909841 909841 G A PLEKHN1 Silent p.R574R 0.63 TCGA-YD-A9TA-06 1 9100184 9100184 G A SLC2A5 Silent p.F212F 0.25 TCGA-YD-A9TA-06 1 91740315 91740315 G A HFM1 Missense_Mutation p.P1214S 0.72 deleterious(0.04) benign(0.082) TCGA-YD-A9TA-06 1 91843716 91843716 G A HFM1 Missense_Mutation p.R421C 0.75 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 92433802 92433802 G A BRDT Missense_Mutation p.E144K 0.80 tolerated(0.69) benign(0.033) TCGA-YD-A9TA-06 1 94685905 94685905 G A ARHGAP29 Silent p.L83L 0.69 TCGA-YD-A9TA-06 1 9642490 9642490 C T SLC25A33 Silent p.I299I 0.60 TCGA-YD-A9TA-06 1 979610 979610 C T AGRN Silent p.F707F 0.60 TCGA-YD-A9TA-06 1 97981389 97981389 G A DPYD Missense_Mutation p.P545S 0.63 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 1 98039336 98039336 G A DPYD Missense_Mutation p.S440L 0.66 deleterious(0) probably_damaging(0.981) TCGA-YD-A9TA-06 1 99150484 99150484 C T SNX7 Missense_Mutation p.P75L 0.75 deleterious(0.04) benign(0.222) TCGA-YD-A9TA-06 20 10388288 10388288 A C MKKS Missense_Mutation p.H416Q 0.19 deleterious(0.04) possibly_damaging(0.854) TCGA-YD-A9TA-06 20 13753255 13753255 G A ESF1 Missense_Mutation p.P386S 0.48 deleterious(0) benign(0.36) TCGA-YD-A9TA-06 20 13840045 13840045 G A SEL1L2 Intron 0.18 TCGA-YD-A9TA-06 20 13845832 13845832 C T SEL1L2 Missense_Mutation p.G487E 0.34 deleterious_low_confidence(0.01) benign(0.374) TCGA-YD-A9TA-06 20 139603 139603 A T DEFB127 Missense_Mutation p.T80S 0.16 tolerated(0.14) probably_damaging(0.994) TCGA-YD-A9TA-06 20 16030599 16030599 G T MACROD2 3'UTR 0.59 TCGA-YD-A9TA-06 20 17716333 17716333 C T BANF2 Silent p.F57F 0.49 TCGA-YD-A9TA-06 20 19565664 19565664 G A SLC24A3 Missense_Mutation p.G158E 0.16 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 20 19955705 19955705 G C RIN2 Missense_Mutation p.V395L 0.32 tolerated(0.79) benign(0.007) TCGA-YD-A9TA-06 20 23017298 23017298 C T SSTR4 3'UTR 0.43 TCGA-YD-A9TA-06 20 2308805 2308805 G A TGM3 Missense_Mutation p.R376Q 0.29 tolerated(0.05) benign(0.041) TCGA-YD-A9TA-06 20 23472403 23472403 G A CST8 Silent p.R33R 0.39 TCGA-YD-A9TA-06 20 23584154 23584154 C T CST9 Missense_Mutation p.G158E 0.42 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-YD-A9TA-06 20 23965999 23965999 C T GGTLC1 Missense_Mutation p.E178K 0.37 tolerated(0.53) benign(0.005) TCGA-YD-A9TA-06 20 29960947 29960947 C T DEFB118 Missense_Mutation p.L116F 0.41 tolerated_low_confidence(0.72) benign(0.095) TCGA-YD-A9TA-06 20 29976790 29976790 G A DEFB119 3'UTR 0.65 TCGA-YD-A9TA-06 20 30432759 30432759 G A FOXS1 Missense_Mutation p.S196F 0.41 deleterious(0.03) benign(0.08) TCGA-YD-A9TA-06 20 30507677 30507677 C T TTLL9 Missense_Mutation p.S172F 0.38 deleterious(0.03) possibly_damaging(0.787) TCGA-YD-A9TA-06 20 30525310 30525310 G A TTLL9 Silent p.A372A 0.50 TCGA-YD-A9TA-06 20 30610518 30610518 G A CCM2L Missense_Mutation p.G330E 0.53 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 20 31017701 31017701 C T ASXL1 Intron 0.46 TCGA-YD-A9TA-06 20 31385001 31385001 C T DNMT3B Silent p.F462F 0.34 TCGA-YD-A9TA-06 20 3147567 3147567 C G LZTS3 Missense_Mutation p.E81D 0.16 tolerated(0.24) possibly_damaging(0.899) TCGA-YD-A9TA-06 20 31611238 31611238 G A BPIFB2 3'UTR 0.46 TCGA-YD-A9TA-06 20 31671583 31671583 G A BPIFB4 Missense_Mutation p.G194S 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 20 31672733 31672733 C T BPIFB4 Missense_Mutation p.S238F 0.33 deleterious(0) possibly_damaging(0.905) TCGA-YD-A9TA-06 20 31761975 31761975 G A BPIFA2 Silent p.A131A 0.44 TCGA-YD-A9TA-06 20 3208971 3208971 C T SLC4A11 Missense_Mutation p.G874D 0.42 deleterious(0) possibly_damaging(0.775) TCGA-YD-A9TA-06 20 3214190 3214190 G A SLC4A11 Silent p.F276F 0.36 TCGA-YD-A9TA-06 20 3285119 3285119 C T C20orf194 Missense_Mutation p.D584N 0.34 tolerated(0.67) benign(0.002) TCGA-YD-A9TA-06 20 32879235 32879235 G A AHCY Missense_Mutation p.S183F 0.39 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-YD-A9TA-06 20 33588661 33588661 G A MYH7B Missense_Mutation p.E1799K 0.38 benign(0.069) TCGA-YD-A9TA-06 20 33588821 33588821 G A MYH7B Missense_Mutation p.E1821K 0.43 probably_damaging(0.991) TCGA-YD-A9TA-06 20 33588931 33588931 G A MYH7B Silent p.G1857G 0.30 TCGA-YD-A9TA-06 20 33855084 33855084 G A MMP24 Silent p.E352E 0.38 TCGA-YD-A9TA-06 20 33875187 33875187 G A FAM83C Silent p.F465F 0.21 TCGA-YD-A9TA-06 20 34021913 34021913 C T GDF5 Missense_Mutation p.E434K 0.33 tolerated(0.05) possibly_damaging(0.578) TCGA-YD-A9TA-06 20 34025084 34025084 C T GDF5 Missense_Mutation p.G209R 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-YD-A9TA-06 20 34145258 34145258 C T ERGIC3 Silent p.L384L 0.38 TCGA-YD-A9TA-06 20 34240936 34240936 G A RBM12 Missense_Mutation p.P770L 0.39 deleterious(0.01) unknown(0) TCGA-YD-A9TA-06 20 34457471 34457471 C T PHF20 Missense_Mutation p.S307L 0.33 tolerated(0.81) benign(0.008) TCGA-YD-A9TA-06 20 34843510 34843510 C T AAR2 Missense_Mutation p.S333F 0.36 tolerated(0.06) probably_damaging(0.93) TCGA-YD-A9TA-06 20 35532610 35532610 G A SAMHD1 Missense_Mutation p.P485S 0.42 tolerated(0.07) benign(0.086) TCGA-YD-A9TA-06 20 3673771 3673771 G A SIGLEC1 Silent p.P1172P 0.57 TCGA-YD-A9TA-06 20 36874514 36874514 G A KIAA1755 Silent p.L6L 0.57 TCGA-YD-A9TA-06 20 3687752 3687752 G A SIGLEC1 Silent p.L8L 0.33 TCGA-YD-A9TA-06 20 36936003 36936003 G A BPI Silent p.E59E 0.26 TCGA-YD-A9TA-06 20 37536775 37536775 G A PPP1R16B Missense_Mutation p.R378Q 0.38 tolerated(0.15) benign(0.359) TCGA-YD-A9TA-06 20 37580426 37580426 C T FAM83D Missense_Mutation p.P371S 0.42 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 20 39727040 39727040 C T TOP1 Intron 0.42 TCGA-YD-A9TA-06 20 40049243 40049243 G A CHD6 Missense_Mutation p.P2011L 0.22 tolerated_low_confidence(0.05) benign(0.001) TCGA-YD-A9TA-06 20 40710600 40710600 G A PTPRT Silent p.I1398I 0.24 TCGA-YD-A9TA-06 20 40714426 40714426 G A PTPRT Missense_Mutation p.S1305F 0.43 deleterious(0.03) possibly_damaging(0.785) TCGA-YD-A9TA-06 20 40735503 40735503 C T PTPRT Missense_Mutation p.E1105K 0.52 tolerated(0.06) probably_damaging(0.994) TCGA-YD-A9TA-06 20 40827886 40827886 C T PTPRT Missense_Mutation p.G829R 0.24 deleterious(0.01) possibly_damaging(0.654) TCGA-YD-A9TA-06 20 40944410 40944410 G A PTPRT Silent p.L698L 0.44 TCGA-YD-A9TA-06 20 40944419 40944419 G A PTPRT Missense_Mutation p.L695F 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-YD-A9TA-06 20 41101002 41101002 G A PTPRT Silent p.L452L 0.30 TCGA-YD-A9TA-06 20 42199295 42199295 G A SGK2 Silent p.E193E 0.33 TCGA-YD-A9TA-06 20 42213619 42213619 C T SGK2 Missense_Mutation p.S416F 0.49 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 20 42213723 42213723 G A SGK2 3'UTR 0.35 TCGA-YD-A9TA-06 20 422284 422284 G A TBC1D20 Silent p.L192L 0.46 TCGA-YD-A9TA-06 20 42680142 42680142 C G TOX2 Missense_Mutation p.P203R 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 20 42984472 42984472 G A R3HDML 3'Flank 0.16 TCGA-YD-A9TA-06 20 43047120 43047120 G A HNF4A Missense_Mutation p.R235K 0.50 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 20 43048377 43048377 C T HNF4A Silent p.V251V 0.51 TCGA-YD-A9TA-06 20 43048428 43048428 C T HNF4A Silent p.I268I 0.51 TCGA-YD-A9TA-06 20 43653684 43653684 C T STK4 Silent p.N406N 0.30 TCGA-YD-A9TA-06 20 43743711 43743711 C T WFDC5 Missense_Mutation p.S5N 0.30 tolerated(0.32) unknown(0) TCGA-YD-A9TA-06 20 43926678 43926678 C T MATN4 Missense_Mutation p.A487T 0.40 probably_damaging(0.999) TCGA-YD-A9TA-06 20 43994238 43994238 C T SYS1 Intron 0.22 TCGA-YD-A9TA-06 20 43994239 43994239 C T SYS1 Intron 0.22 TCGA-YD-A9TA-06 20 44047516 44047516 C T PIGT Silent p.L130L 0.25 TCGA-YD-A9TA-06 20 44207955 44207955 C T WFDC8 5'UTR 0.48 TCGA-YD-A9TA-06 20 44277378 44277378 C T WFDC11 Missense_Mutation p.E82K 0.39 tolerated(0.09) benign(0) TCGA-YD-A9TA-06 20 44432000 44432000 C T DNTTIP1 Missense_Mutation p.R196C 0.32 deleterious(0) probably_damaging(0.939) TCGA-YD-A9TA-06 20 44444218 44444218 C T UBE2C Silent p.F85F 0.34 TCGA-YD-A9TA-06 20 44664436 44664436 C T SLC12A5 Silent p.F123F 0.22 TCGA-YD-A9TA-06 20 44673705 44673705 G A SLC12A5 Missense_Mutation p.G522R 0.54 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 20 44673774 44673774 C T SLC12A5 Silent p.L545L 0.26 TCGA-YD-A9TA-06 20 45801390 45801390 C T EYA2 Missense_Mutation p.S358L 0.21 tolerated(0.06) benign(0.105) TCGA-YD-A9TA-06 20 46252722 46252722 C T NCOA3 Silent p.L51L 0.33 TCGA-YD-A9TA-06 20 4680047 4680047 C T PRNP Missense_Mutation p.H61Y 0.29 tolerated(0.42) possibly_damaging(0.684) TCGA-YD-A9TA-06 20 47351176 47351176 G A PREX1 Silent p.F142F 0.55 TCGA-YD-A9TA-06 20 47606200 47606200 C T ARFGEF2 Silent p.I931I 0.58 TCGA-YD-A9TA-06 20 47990997 47990997 G A KCNB1 Missense_Mutation p.S367F 0.18 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 20 48166668 48166668 C T PTGIS Missense_Mutation p.D45N 0.48 deleterious(0) benign(0.01) TCGA-YD-A9TA-06 20 48166669 48166669 C T PTGIS Silent p.L44L 0.47 TCGA-YD-A9TA-06 20 48497520 48497520 C T SLC9A8 Silent p.F422F 0.16 TCGA-YD-A9TA-06 20 48522216 48522216 G A SPATA2 Silent p.F501F 0.58 TCGA-YD-A9TA-06 20 48568669 48568669 C T RNF114 Silent p.I226I 0.49 TCGA-YD-A9TA-06 20 50407579 50407579 G A SALL4 Silent p.T481T 0.21 TCGA-YD-A9TA-06 20 51871837 51871837 T G TSHZ2 Missense_Mutation p.C614G 0.30 tolerated(0.46) benign(0) TCGA-YD-A9TA-06 20 52645072 52645072 A G BCAS1 Silent p.F194F 0.57 TCGA-YD-A9TA-06 20 54575901 54575901 G A CBLN4 Silent p.I98I 0.51 TCGA-YD-A9TA-06 20 55033513 55033513 C T CASS4 Missense_Mutation p.H691Y 0.36 deleterious(0.03) benign(0.393) TCGA-YD-A9TA-06 20 56137167 56137167 G A PCK1 Missense_Mutation p.E89K 0.42 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 20 57042191 57042191 C T APCDD1L Missense_Mutation p.G238S 0.53 tolerated(0.42) benign(0.426) TCGA-YD-A9TA-06 20 57767442 57767442 C T ZNF831 Silent p.I456I 0.46 TCGA-YD-A9TA-06 20 57768649 57768649 G A ZNF831 Missense_Mutation p.D859N 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-YD-A9TA-06 20 57769007 57769007 C T ZNF831 Missense_Mutation p.S978L 0.26 tolerated(0.32) possibly_damaging(0.766) TCGA-YD-A9TA-06 20 57829268 57829268 G A ZNF831 Missense_Mutation p.D1502N 0.43 tolerated(0.19) benign(0.037) TCGA-YD-A9TA-06 20 5904399 5904399 G A CHGB Missense_Mutation p.E537K 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 20 5905759 5905759 C T CHGB 3'UTR 0.60 TCGA-YD-A9TA-06 20 61143418 61143418 C T C20orf166 5'Flank 0.26 TCGA-YD-A9TA-06 20 61143754 61143754 C T C20orf166 5'Flank 0.23 TCGA-YD-A9TA-06 20 61143755 61143755 C T C20orf166 5'Flank 0.23 TCGA-YD-A9TA-06 20 61451327 61451327 G A COL9A3 Missense_Mutation p.G101E 0.28 deleterious(0) unknown(0) TCGA-YD-A9TA-06 20 61477049 61477049 G A TCFL5 Intron 0.62 TCGA-YD-A9TA-06 20 61513606 61513606 G A DIDO1 Silent p.V1234V 0.19 TCGA-YD-A9TA-06 20 61598170 61598170 C T SLC17A9 Intron 0.19 TCGA-YD-A9TA-06 20 61951666 61951666 C T COL20A1 Silent p.I1033I 0.45 TCGA-YD-A9TA-06 20 61959809 61959809 C T COL20A1 Missense_Mutation p.P1247L 0.17 deleterious(0) probably_damaging(0.941) TCGA-YD-A9TA-06 20 61990909 61990909 G A CHRNA4 Silent p.L73L 0.30 TCGA-YD-A9TA-06 20 62178684 62178684 G A SRMS Missense_Mutation p.P45S 0.56 tolerated(0.28) benign(0.003) TCGA-YD-A9TA-06 20 62223884 62223884 A C GMEB2 Splice_Site p.X277_splice 0.54 TCGA-YD-A9TA-06 20 62729885 62729885 C T OPRL1 Silent p.F282F 0.48 TCGA-YD-A9TA-06 20 8689392 8689392 G A PLCB1 Missense_Mutation p.V415M 0.38 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 20 8782745 8782745 G A PLCB1 Intron 0.52 TCGA-YD-A9TA-06 20 9346152 9346152 C T PLCB4 Missense_Mutation p.P165L 0.38 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 20 9376258 9376258 C T PLCB4 Silent p.I501I 0.45 TCGA-YD-A9TA-06 20 9402085 9402085 G A PLCB4 Missense_Mutation p.E754K 0.48 deleterious(0.03) possibly_damaging(0.595) TCGA-YD-A9TA-06 20 9416257 9416257 A G PLCB4 Missense_Mutation p.K847E 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-YD-A9TA-06 20 9434083 9434083 C T PLCB4 Silent p.I978I 0.32 TCGA-YD-A9TA-06 20 944581 944581 C T RSPO4 Missense_Mutation p.G198R 0.44 deleterious(0) possibly_damaging(0.871) TCGA-YD-A9TA-06 20 944712 944712 C T RSPO4 Missense_Mutation p.G154E 0.46 tolerated(0.16) possibly_damaging(0.871) TCGA-YD-A9TA-06 20 9561204 9561204 G A PAK7 Missense_Mutation p.A193V 0.36 tolerated_low_confidence(0.2) benign(0.014) TCGA-YD-A9TA-06 21 10951282 10951282 G A TPTE Nonsense_Mutation p.R144* 0.29 TCGA-YD-A9TA-06 21 10996093 10996093 C T TPTE RNA 0.16 TCGA-YD-A9TA-06 21 11038762 11038762 C T BAGE2 RNA 0.09 TCGA-YD-A9TA-06 21 11038844 11038844 G A BAGE2 RNA 0.10 TCGA-YD-A9TA-06 21 11038895 11038895 G A BAGE2 RNA 0.07 TCGA-YD-A9TA-06 21 14417592 14417592 G A RNU6-614P 5'Flank 0.12 TCGA-YD-A9TA-06 21 15399892 15399892 C T AP001347.6 RNA 0.28 TCGA-YD-A9TA-06 21 15535793 15535793 C T LIPI Missense_Mutation p.R339K 0.23 tolerated(0.95) benign(0.004) TCGA-YD-A9TA-06 21 15561697 15561697 C T LIPI Silent p.K51K 0.25 TCGA-YD-A9TA-06 21 27066196 27066196 G A JAM2 Missense_Mutation p.D124N 0.48 tolerated(0.17) benign(0.017) TCGA-YD-A9TA-06 21 27840924 27840924 C T CYYR1 Missense_Mutation p.E121K 0.46 deleterious(0.01) probably_damaging(0.983) TCGA-YD-A9TA-06 21 28337622 28337622 G A ADAMTS5 Silent p.I363I 0.56 TCGA-YD-A9TA-06 21 30458221 30458221 G A MAP3K7CL Missense_Mutation p.E14K 0.25 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-YD-A9TA-06 21 30532284 30532284 C T MAP3K7CL Missense_Mutation p.S152F 0.48 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 21 31863886 31863886 A C KRTAP19-3 3'UTR 0.48 TCGA-YD-A9TA-06 21 32575261 32575261 A C TIAM1 Missense_Mutation p.L819R 0.49 tolerated(0.16) benign(0.005) TCGA-YD-A9TA-06 21 32598234 32598234 G A TIAM1 Silent p.I539I 0.29 TCGA-YD-A9TA-06 21 32638812 32638812 G A TIAM1 Silent p.F159F 0.49 TCGA-YD-A9TA-06 21 37444968 37444968 C T CBR1 Missense_Mutation p.H208Y 0.68 tolerated(0.26) benign(0.01) TCGA-YD-A9TA-06 21 38126514 38126514 G A HLCS 3'UTR 0.70 TCGA-YD-A9TA-06 21 39580325 39580325 C A DSCR10 RNA 0.71 TCGA-YD-A9TA-06 21 41032506 41032506 G A B3GALT5 Missense_Mutation p.R7K 0.70 tolerated(0.23) benign(0.009) TCGA-YD-A9TA-06 21 42749784 42749784 C T MX2 Silent p.S106S 0.77 TCGA-YD-A9TA-06 21 42851178 42851178 C T TMPRSS2 Missense_Mutation p.D239N 0.66 tolerated(0.19) possibly_damaging(0.878) TCGA-YD-A9TA-06 21 43161323 43161323 G A RIPK4 Missense_Mutation p.A677V 0.62 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 21 43522325 43522325 G A UMODL1 Silent p.T412T 0.73 TCGA-YD-A9TA-06 21 43833156 43833156 C T UBASH3A Silent p.C126C 0.65 TCGA-YD-A9TA-06 21 45527294 45527294 C T PWP2 5'UTR 0.85 TCGA-YD-A9TA-06 21 45706475 45706475 C T AIRE Silent p.P56P 0.63 TCGA-YD-A9TA-06 21 46067079 46067079 C G KRTAP10-11 Missense_Mutation p.S235C 0.83 tolerated(0.08) possibly_damaging(0.902) TCGA-YD-A9TA-06 21 46320285 46320285 C T ITGB2 Missense_Mutation p.D283N 0.73 deleterious(0) possibly_damaging(0.852) TCGA-YD-A9TA-06 21 47552190 47552190 C T COL6A2 Silent p.I928I 1.00 TCGA-YD-A9TA-06 21 47558823 47558823 G A FTCD Silent p.L425L 0.76 TCGA-YD-A9TA-06 22 16266972 16266972 C T POTEH Missense_Mutation p.E493K 0.04 tolerated_low_confidence(0.09) benign(0.048) TCGA-YD-A9TA-06 22 17072007 17072007 C T CCT8L2 Missense_Mutation p.M478I 0.77 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 22 17978462 17978462 C T CECR2 Silent p.L101L 0.77 TCGA-YD-A9TA-06 22 17982135 17982135 C T CECR2 Silent p.S183S 0.50 TCGA-YD-A9TA-06 22 18028164 18028164 C T CECR2 Missense_Mutation p.P1042S 0.78 tolerated_low_confidence(0.22) benign(0.094) TCGA-YD-A9TA-06 22 18028958 18028958 A T CECR2 Silent p.S1306S 0.07 TCGA-YD-A9TA-06 22 18844897 18844897 C T BCRP7 RNA 0.34 TCGA-YD-A9TA-06 22 20130752 20130752 C T ZDHHC8 Silent p.P533P 0.91 TCGA-YD-A9TA-06 22 20458634 20458634 G A RIMBP3 Missense_Mutation p.P890S 0.19 deleterious(0.01) possibly_damaging(0.669) TCGA-YD-A9TA-06 22 21064283 21064283 G A PI4KA Missense_Mutation p.P2029L 0.37 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 22 21377663 21377663 C T P2RX6 Silent p.L246L 0.63 TCGA-YD-A9TA-06 22 21988616 21988616 C T CCDC116 Silent p.A126A 0.85 TCGA-YD-A9TA-06 22 21988617 21988617 C T CCDC116 Missense_Mutation p.R127W 0.85 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 22 22323001 22323001 A C TOP3B Missense_Mutation p.L243R 0.27 deleterious(0) probably_damaging(0.972) TCGA-YD-A9TA-06 22 22893226 22893226 C T PRAME Missense_Mutation p.G103R 0.76 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 22 23010828 23010828 C T IGLV3-27 Silent p.L11L 0.89 TCGA-YD-A9TA-06 22 23063422 23063422 A T IGLV3-19 Silent p.G43G 0.79 TCGA-YD-A9TA-06 22 23237885 23237885 C T IGLL5 3'UTR 0.59 TCGA-YD-A9TA-06 22 23524097 23524097 C T BCR Missense_Mutation p.S317F 0.85 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-YD-A9TA-06 22 23524098 23524098 C T BCR Silent p.S317S 0.86 TCGA-YD-A9TA-06 22 23615910 23615910 C T BCR Silent p.I688I 0.53 TCGA-YD-A9TA-06 22 23652513 23652513 C T BCR Silent p.I1025I 0.70 TCGA-YD-A9TA-06 22 25294286 25294286 G A SGSM1 Silent p.E845E 0.57 TCGA-YD-A9TA-06 22 25294377 25294377 G A SGSM1 Missense_Mutation p.E876K 0.78 tolerated(0.11) benign(0.002) TCGA-YD-A9TA-06 22 25320205 25320205 C T SGSM1 Silent p.L1137L 0.90 TCGA-YD-A9TA-06 22 26118466 26118466 C T ADRBK2 3'UTR 0.85 TCGA-YD-A9TA-06 22 26351212 26351212 C T MYO18B Missense_Mutation p.S2013F 1.00 deleterious(0) possibly_damaging(0.897) TCGA-YD-A9TA-06 22 29153300 29153300 C T HSCB 3'UTR 0.80 TCGA-YD-A9TA-06 22 29833804 29833804 C T RFPL1 5'Flank 0.77 TCGA-YD-A9TA-06 22 29837715 29837715 G A RFPL1 Silent p.V186V 0.82 TCGA-YD-A9TA-06 22 29885681 29885681 G A NEFH Silent p.V684V 0.71 TCGA-YD-A9TA-06 22 29886066 29886066 G A NEFH Missense_Mutation p.E813K 0.79 tolerated_low_confidence(0.06) unknown(0) TCGA-YD-A9TA-06 22 29886485 29886485 G A NEFH Silent p.P952P 0.73 TCGA-YD-A9TA-06 22 29966483 29966483 G A NIPSNAP1 Missense_Mutation p.S46F 0.20 deleterious(0) probably_damaging(0.95) TCGA-YD-A9TA-06 22 30741104 30741104 G A SF3A1 Missense_Mutation p.P157S 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-YD-A9TA-06 22 31487434 31487434 C T SMTN Silent p.G475G 0.74 TCGA-YD-A9TA-06 22 31521812 31521812 C T INPP5J Intron 0.80 TCGA-YD-A9TA-06 22 32909798 32909798 G A SYN3 Silent p.L542L 0.63 TCGA-YD-A9TA-06 22 37334460 37334460 C T CSF2RB Silent p.V870V 0.79 TCGA-YD-A9TA-06 22 37524787 37524787 C T IL2RB Silent p.Q335Q 0.63 TCGA-YD-A9TA-06 22 37705326 37705326 T G CYTH4 Missense_Mutation p.F257C 0.51 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 22 37769049 37769049 G A ELFN2 3'UTR 0.69 TCGA-YD-A9TA-06 22 37891771 37891771 G A CARD10 Nonsense_Mutation p.Q767* 0.76 TCGA-YD-A9TA-06 22 37964194 37964194 C T CDC42EP1 Silent p.F181F 0.74 TCGA-YD-A9TA-06 22 39355596 39355596 G A APOBEC3A Missense_Mutation p.G27R 0.47 tolerated(0.21) benign(0.022) TCGA-YD-A9TA-06 22 39445567 39445567 G A APOBEC3F Missense_Mutation p.R235K 0.76 tolerated(0.43) benign(0.217) TCGA-YD-A9TA-06 22 39909797 39909797 C T MIEF1 Silent p.I287I 0.79 TCGA-YD-A9TA-06 22 40066054 40066054 C T CACNA1I Silent p.N1402N 0.46 TCGA-YD-A9TA-06 22 40066141 40066141 G A CACNA1I Silent p.V1431V 0.78 TCGA-YD-A9TA-06 22 40075770 40075770 C T CACNA1I Missense_Mutation p.S1813F 0.50 deleterious(0) possibly_damaging(0.485) TCGA-YD-A9TA-06 22 40075771 40075771 C T CACNA1I Silent p.S1813S 0.50 TCGA-YD-A9TA-06 22 40139887 40139887 C T ENTHD1 Missense_Mutation p.E541K 0.79 tolerated(0.08) possibly_damaging(0.711) TCGA-YD-A9TA-06 22 40815335 40815335 G A MKL1 Silent p.T369T 0.78 TCGA-YD-A9TA-06 22 40816543 40816543 G A MKL1 Missense_Mutation p.P307S 0.79 tolerated(0.07) benign(0.002) TCGA-YD-A9TA-06 22 41997175 41997175 G A DESI1 Missense_Mutation p.R145W 0.79 deleterious(0.03) benign(0.054) TCGA-YD-A9TA-06 22 42781126 42781126 C T NFAM1 3'UTR 0.73 TCGA-YD-A9TA-06 22 42899257 42899257 C T SERHL RNA 0.72 TCGA-YD-A9TA-06 22 42988069 42988069 C T POLDIP3 Missense_Mutation p.A305T 0.14 tolerated(0.11) probably_damaging(0.983) TCGA-YD-A9TA-06 22 43619137 43619137 G A SCUBE1 Silent p.F431F 0.72 TCGA-YD-A9TA-06 22 45795181 45795181 C T SMC1B Missense_Mutation p.E303K 0.70 deleterious(0.01) probably_damaging(0.991) TCGA-YD-A9TA-06 22 50962167 50962167 G A SCO2 Missense_Mutation p.S225F 0.81 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 2 10132161 10132161 C T GRHL1 Missense_Mutation p.P450S 0.50 tolerated(0.49) probably_damaging(0.998) TCGA-YD-A9TA-06 2 101565927 101565927 C T NPAS2 Missense_Mutation p.R195C 0.39 deleterious(0) probably_damaging(0.964) TCGA-YD-A9TA-06 2 101604653 101604653 C A NPAS2 Missense_Mutation p.A581E 0.23 tolerated(0.3) benign(0.131) TCGA-YD-A9TA-06 2 102818134 102818134 G A IL1RL2 Missense_Mutation p.G203E 0.27 deleterious(0.03) possibly_damaging(0.789) TCGA-YD-A9TA-06 2 102842449 102842449 C T IL1RL2 Silent p.I361I 0.40 TCGA-YD-A9TA-06 2 102968236 102968236 C T IL1RL1 Missense_Mutation p.T509I 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-YD-A9TA-06 2 103040339 103040339 G A IL18RAP Missense_Mutation p.D47N 0.43 tolerated(0.48) benign(0.086) TCGA-YD-A9TA-06 2 103061668 103061668 G A IL18RAP Missense_Mutation p.D314N 0.33 tolerated(0.56) benign(0.013) TCGA-YD-A9TA-06 2 103095512 103095512 C T SLC9A4 Silent p.S157S 0.42 TCGA-YD-A9TA-06 2 103128688 103128688 C T SLC9A4 Silent p.I505I 0.34 TCGA-YD-A9TA-06 2 103334980 103334980 G A MFSD9 Missense_Mutation p.P442S 0.41 tolerated(0.08) benign(0.265) TCGA-YD-A9TA-06 2 108476218 108476218 G A RGPD4 Missense_Mutation p.E559K 0.24 tolerated(0.09) benign(0.005) TCGA-YD-A9TA-06 2 108488640 108488640 C T RGPD4 Missense_Mutation p.R1394C 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 108488965 108488965 G C RGPD4 Missense_Mutation p.R1502T 0.31 deleterious(0.03) possibly_damaging(0.876) TCGA-YD-A9TA-06 2 108994814 108994814 G A SULT1C4 Silent p.E7E 0.45 TCGA-YD-A9TA-06 2 108998265 108998265 G A SULT1C4 Missense_Mutation p.D73N 0.32 tolerated(0.09) benign(0.095) TCGA-YD-A9TA-06 2 109300399 109300399 C T LIMS1 Missense_Mutation p.P370S 0.35 deleterious(0) unknown(0) TCGA-YD-A9TA-06 2 109383764 109383764 C T RANBP2 Missense_Mutation p.L2257F 0.40 tolerated(0.06) probably_damaging(0.972) TCGA-YD-A9TA-06 2 111395672 111395672 G A BUB1 Missense_Mutation p.H1043Y 0.28 deleterious(0.04) benign(0.231) TCGA-YD-A9TA-06 2 111850521 111850521 C T ACOXL Missense_Mutation p.A507V 0.43 tolerated(0.2) benign(0.243) TCGA-YD-A9TA-06 2 112705121 112705121 C T MERTK Missense_Mutation p.S245F 0.41 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 112761505 112761505 G A MERTK Missense_Mutation p.G604E 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 112786004 112786004 G A MERTK Missense_Mutation p.E855K 0.33 deleterious(0.01) benign(0.205) TCGA-YD-A9TA-06 2 11284054 11284054 G A C2orf50 Silent p.K102K 0.42 TCGA-YD-A9TA-06 2 113243570 113243570 G T TTL Silent p.V78V 0.39 TCGA-YD-A9TA-06 2 113591035 113591035 T G IL1B Missense_Mutation p.K73Q 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-YD-A9TA-06 2 113593181 113593181 C T IL1B Missense_Mutation p.D21N 0.32 deleterious(0.04) benign(0.16) TCGA-YD-A9TA-06 2 113819703 113819703 G A IL36RN Missense_Mutation p.E40K 0.42 deleterious(0.02) probably_damaging(0.969) TCGA-YD-A9TA-06 2 113943753 113943753 G A PSD4 Missense_Mutation p.E517K 0.40 tolerated(0.13) benign(0.009) TCGA-YD-A9TA-06 2 11587762 11587762 G A E2F6 Missense_Mutation p.P264S 0.29 deleterious(0.01) unknown(0) TCGA-YD-A9TA-06 2 11716544 11716544 C T GREB1 Missense_Mutation p.H174Y 0.41 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 2 119727822 119727822 C T MARCO Missense_Mutation p.S111L 0.29 tolerated(0.84) possibly_damaging(0.463) TCGA-YD-A9TA-06 2 119739069 119739069 G A MARCO Missense_Mutation p.R284K 0.41 tolerated(1) benign(0.22) TCGA-YD-A9TA-06 2 121746665 121746665 G A GLI2 Missense_Mutation p.D1059N 0.43 tolerated(0.06) possibly_damaging(0.454) TCGA-YD-A9TA-06 2 121747616 121747616 G A GLI2 Missense_Mutation p.E1376K 0.55 deleterious(0.04) probably_damaging(0.981) TCGA-YD-A9TA-06 2 121989468 121989468 G A TFCP2L1 Silent p.S425S 0.29 TCGA-YD-A9TA-06 2 125175162 125175162 C A CNTNAP5 Missense_Mutation p.S175Y 0.30 tolerated(0.05) possibly_damaging(0.617) TCGA-YD-A9TA-06 2 125504907 125504907 G A CNTNAP5 Missense_Mutation p.E726K 0.39 tolerated(0.22) benign(0.056) TCGA-YD-A9TA-06 2 125547512 125547512 G A CNTNAP5 Missense_Mutation p.G928E 0.43 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 2 125671801 125671801 C T CNTNAP5 Missense_Mutation p.S1286F 0.47 deleterious(0.03) probably_damaging(0.933) TCGA-YD-A9TA-06 2 127952954 127952954 G A CYP27C1 Missense_Mutation p.P226S 0.35 tolerated(1) benign(0.054) TCGA-YD-A9TA-06 2 128186331 128186331 G A PROC Missense_Mutation p.E399K 0.39 tolerated(0.18) benign(0.151) TCGA-YD-A9TA-06 2 128744485 128744485 G A SAP130 Missense_Mutation p.P637L 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.458) TCGA-YD-A9TA-06 2 130832253 130832253 G A POTEF Missense_Mutation p.A931V 0.52 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-YD-A9TA-06 2 130832852 130832852 G A POTEF Silent p.F731F 0.44 TCGA-YD-A9TA-06 2 130833145 130833145 G A POTEF Missense_Mutation p.L634F 0.31 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-YD-A9TA-06 2 130843466 130843466 C T POTEF Missense_Mutation p.D567N 0.88 deleterious_low_confidence(0) benign(0.094) TCGA-YD-A9TA-06 2 130931151 130931151 G A SMPD4 Missense_Mutation p.R108C 0.26 deleterious(0) probably_damaging(0.942) TCGA-YD-A9TA-06 2 130931152 130931152 G A SMPD4 Silent p.L107L 0.24 TCGA-YD-A9TA-06 2 131521937 131521937 C T AMER3 Silent p.V764V 0.52 TCGA-YD-A9TA-06 2 131522030 131522030 C T AMER3 Silent p.P795P 0.40 TCGA-YD-A9TA-06 2 132290850 132290850 C T CCDC74A Missense_Mutation p.P339L 0.42 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 2 133542796 133542796 G A NCKAP5 Missense_Mutation p.P530S 0.39 tolerated(1) benign(0.023) TCGA-YD-A9TA-06 2 133542831 133542831 C T NCKAP5 Missense_Mutation p.R518K 0.42 tolerated(0.89) benign(0.046) TCGA-YD-A9TA-06 2 135625305 135625305 G A ACMSD Intron 0.36 TCGA-YD-A9TA-06 2 136533835 136533835 C T UBXN4 Nonsense_Mutation p.Q323* 0.33 TCGA-YD-A9TA-06 2 136566388 136566388 C T LCT Missense_Mutation p.E1177K 0.30 tolerated(0.09) probably_damaging(0.98) TCGA-YD-A9TA-06 2 136566468 136566468 G A LCT Missense_Mutation p.S1150F 0.26 tolerated(0.67) possibly_damaging(0.694) TCGA-YD-A9TA-06 2 136567197 136567197 A C LCT Missense_Mutation p.F907C 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 136614318 136614318 G A MCM6 Missense_Mutation p.L536F 0.42 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 2 137814289 137814289 C T THSD7B Nonsense_Mutation p.Q147* 0.43 TCGA-YD-A9TA-06 2 137988714 137988714 G A THSD7B Silent p.T608T 0.34 TCGA-YD-A9TA-06 2 138320900 138320900 G A THSD7B Missense_Mutation p.G1086E 0.45 tolerated(1) unknown(0) TCGA-YD-A9TA-06 2 138329991 138329991 G A THSD7B Silent p.A1099A 0.25 TCGA-YD-A9TA-06 2 141081536 141081536 G A LRP1B Missense_Mutation p.S4147L 0.39 benign(0.307) TCGA-YD-A9TA-06 2 141259381 141259381 G A LRP1B Missense_Mutation p.L2909F 0.32 possibly_damaging(0.849) TCGA-YD-A9TA-06 2 141259444 141259444 C T LRP1B Splice_Site p.X2888_splice 0.44 TCGA-YD-A9TA-06 2 141459770 141459770 C T LRP1B Missense_Mutation p.G2081E 0.43 probably_damaging(0.931) TCGA-YD-A9TA-06 2 141751699 141751699 G A LRP1B Missense_Mutation p.P837S 0.35 possibly_damaging(0.641) TCGA-YD-A9TA-06 2 141773268 141773268 C T LRP1B Silent p.R729R 0.40 TCGA-YD-A9TA-06 2 143798028 143798028 G A KYNU Missense_Mutation p.R358Q 0.50 deleterious(0.03) probably_damaging(0.967) TCGA-YD-A9TA-06 2 144710389 144710389 C T GTDC1 Silent p.G384G 0.36 TCGA-YD-A9TA-06 2 149226155 149226155 C T MBD5 Missense_Mutation p.R215C 0.35 deleterious(0) possibly_damaging(0.835) TCGA-YD-A9TA-06 2 149806908 149806908 C T KIF5C Silent p.I300I 0.50 TCGA-YD-A9TA-06 2 149847606 149847606 C T KIF5C Missense_Mutation p.S600F 0.40 deleterious(0) possibly_damaging(0.836) TCGA-YD-A9TA-06 2 1499963 1499963 C T TPO Missense_Mutation p.P737S 0.39 tolerated(0.44) benign(0.027) TCGA-YD-A9TA-06 2 152135416 152135416 G A NMI Missense_Mutation p.S89L 0.27 tolerated(0.39) benign(0.036) TCGA-YD-A9TA-06 2 152404854 152404854 G A NEB Missense_Mutation p.H6709Y 0.22 benign(0.014) TCGA-YD-A9TA-06 2 152411495 152411495 C T NEB Missense_Mutation p.D6460N 0.38 probably_damaging(1) TCGA-YD-A9TA-06 2 152487671 152487671 G A NEB Missense_Mutation p.L3202F 0.40 benign(0.404) TCGA-YD-A9TA-06 2 152501023 152501023 G A NEB Missense_Mutation p.P2535S 0.44 benign(0.037) TCGA-YD-A9TA-06 2 152521101 152521101 C T NEB Missense_Mutation p.E1789K 0.50 benign(0.222) TCGA-YD-A9TA-06 2 152534213 152534213 C T NEB Missense_Mutation p.E1214K 0.37 probably_damaging(0.985) TCGA-YD-A9TA-06 2 152553914 152553914 C T NEB Missense_Mutation p.E439K 0.40 probably_damaging(0.997) TCGA-YD-A9TA-06 2 152670718 152670718 G A ARL5A Missense_Mutation p.R74C 0.42 deleterious(0.01) benign(0) TCGA-YD-A9TA-06 2 155099279 155099279 G A GALNT13 Missense_Mutation p.E183K 0.23 tolerated(0.47) benign(0.003) TCGA-YD-A9TA-06 2 155566141 155566141 C T KCNJ3 Silent p.F243F 0.43 TCGA-YD-A9TA-06 2 158115335 158115335 G A GALNT5 Silent p.P247P 0.42 TCGA-YD-A9TA-06 2 158140850 158140850 T C GALNT5 Missense_Mutation p.F504S 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 159033122 159033122 C A CCDC148 Missense_Mutation p.A514S 0.30 deleterious(0.03) possibly_damaging(0.866) TCGA-YD-A9TA-06 2 159672372 159672372 G A DAPL1 3'UTR 0.56 TCGA-YD-A9TA-06 2 160661468 160661468 G A LY75 Intron 0.40 TCGA-YD-A9TA-06 2 160737635 160737635 G A LY75-CD302 Missense_Mutation p.P455S 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-YD-A9TA-06 2 160840572 160840572 C T PLA2R1 Missense_Mutation p.E684K 0.42 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 16085797 16085797 C T MYCN Missense_Mutation p.P325S 0.32 tolerated(0.35) probably_damaging(0.963) TCGA-YD-A9TA-06 2 162081185 162081185 C T TANK Missense_Mutation p.H150Y 0.32 tolerated(0.09) probably_damaging(0.966) TCGA-YD-A9TA-06 2 162735747 162735747 T C SLC4A10 Missense_Mutation p.L352S 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 162751327 162751327 C T SLC4A10 Missense_Mutation p.P445S 0.40 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 2 163072497 163072497 A T FAP Missense_Mutation p.N259K 0.46 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 163279985 163279985 C T KCNH7 Missense_Mutation p.G672E 0.33 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 2 166152563 166152563 C T SCN2A Missense_Mutation p.P77L 0.35 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 167313498 167313498 C T SCN7A Missense_Mutation p.G391D 0.46 deleterious(0) probably_damaging(0.941) TCGA-YD-A9TA-06 2 16734184 16734184 C T FAM49A 3'UTR 0.30 TCGA-YD-A9TA-06 2 167760396 167760396 G A XIRP2 Missense_Mutation p.G135E 0.32 benign(0.008) TCGA-YD-A9TA-06 2 168099088 168099088 G A XIRP2 Missense_Mutation p.E396K 0.35 benign(0.081) TCGA-YD-A9TA-06 2 168099149 168099149 C T XIRP2 Missense_Mutation p.S416L 0.46 benign(0.178) TCGA-YD-A9TA-06 2 168105908 168105908 C T XIRP2 Missense_Mutation p.S2669F 0.41 possibly_damaging(0.617) TCGA-YD-A9TA-06 2 168725900 168725900 C T B3GALT1 Silent p.L117L 0.48 TCGA-YD-A9TA-06 2 169757961 169757961 C T G6PC2 Silent p.F40F 0.38 TCGA-YD-A9TA-06 2 169825892 169825892 C T ABCB11 Missense_Mutation p.G660E 0.40 tolerated(0.14) benign(0.011) TCGA-YD-A9TA-06 2 169985107 169985107 C T LRP2 3'UTR 0.46 TCGA-YD-A9TA-06 2 169995847 169995847 G A LRP2 Silent p.I4434I 0.33 TCGA-YD-A9TA-06 2 170059379 170059379 C T LRP2 Missense_Mutation p.R2699Q 0.32 possibly_damaging(0.826) TCGA-YD-A9TA-06 2 170063115 170063115 A G LRP2 Missense_Mutation p.F2372S 0.44 possibly_damaging(0.821) TCGA-YD-A9TA-06 2 170065991 170065991 G A LRP2 Silent p.V2147V 0.35 TCGA-YD-A9TA-06 2 171240224 171240224 C T MYO3B Missense_Mutation p.S397F 0.38 deleterious(0) probably_damaging(0.969) TCGA-YD-A9TA-06 2 171248115 171248115 G A MYO3B Missense_Mutation p.E555K 0.35 tolerated(0.94) benign(0.004) TCGA-YD-A9TA-06 2 171687696 171687696 C T GAD1 Missense_Mutation p.R181C 0.38 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 2 171806205 171806205 C T GORASP2 Missense_Mutation p.R101C 0.43 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 172306462 172306462 C T DCAF17 Missense_Mutation p.R178W 0.29 deleterious(0) possibly_damaging(0.685) TCGA-YD-A9TA-06 2 173832161 173832161 C T RAPGEF4 Silent p.I331I 0.18 TCGA-YD-A9TA-06 2 173861254 173861254 C T RAPGEF4 Silent p.R517R 0.43 TCGA-YD-A9TA-06 2 175676245 175676245 C T CHN1 Missense_Mutation p.D320N 0.46 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 176946920 176946920 C T EVX2 Missense_Mutation p.E229K 0.39 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 178494221 178494221 C T PDE11A Missense_Mutation p.E906K 0.40 tolerated(0.65) possibly_damaging(0.636) TCGA-YD-A9TA-06 2 178562116 178562116 G A PDE11A Silent p.D763D 0.38 TCGA-YD-A9TA-06 2 179425088 179425088 C T TTN Missense_Mutation p.E28591K 0.40 TCGA-YD-A9TA-06 2 179437182 179437182 C T TTN Silent p.R24559R 0.42 TCGA-YD-A9TA-06 2 179475984 179475984 C T TTN Missense_Mutation p.D16958N 0.37 TCGA-YD-A9TA-06 2 179497361 179497361 C T TTN Missense_Mutation p.D14458N 0.36 TCGA-YD-A9TA-06 2 179514587 179514587 C T TTN Silent p.K13284K 0.41 TCGA-YD-A9TA-06 2 179526486 179526486 C T TTN Missense_Mutation p.V12429M 0.41 TCGA-YD-A9TA-06 2 179567308 179567308 G A TTN Silent p.S10102S 0.35 TCGA-YD-A9TA-06 2 179569372 179569372 G A TTN Missense_Mutation p.P9943S 0.45 TCGA-YD-A9TA-06 2 179575549 179575549 C T TTN Silent p.P9425P 0.42 TCGA-YD-A9TA-06 2 179589234 179589234 C T TTN Silent p.P6956P 0.28 TCGA-YD-A9TA-06 2 179594838 179594838 C T TTN Missense_Mutation p.A6097T 0.30 TCGA-YD-A9TA-06 2 179596116 179596116 C T TTN Missense_Mutation p.E5793K 0.38 TCGA-YD-A9TA-06 2 179599307 179599307 C T TTN Missense_Mutation p.E5082K 0.42 TCGA-YD-A9TA-06 2 179610798 179610798 G A TTN Intron 0.41 TCGA-YD-A9TA-06 2 179611947 179611947 C T TTN Intron 0.45 TCGA-YD-A9TA-06 2 179612631 179612631 G A TTN Intron 0.31 TCGA-YD-A9TA-06 2 179613773 179613773 G A TTN Intron 0.42 TCGA-YD-A9TA-06 2 179614036 179614036 C T TTN Intron 0.35 TCGA-YD-A9TA-06 2 179615154 179615154 G A TTN Intron 0.27 TCGA-YD-A9TA-06 2 179615420 179615420 C T TTN Intron 0.41 TCGA-YD-A9TA-06 2 179615681 179615681 C T TTN Intron 0.39 TCGA-YD-A9TA-06 2 179629419 179629419 C T TTN Missense_Mutation p.E3275K 0.50 TCGA-YD-A9TA-06 2 179638300 179638300 C A TTN Missense_Mutation p.V2495L 0.47 TCGA-YD-A9TA-06 2 179638301 179638301 A T TTN Silent p.I2494I 0.47 TCGA-YD-A9TA-06 2 179639168 179639168 C T TTN Missense_Mutation p.D2275N 0.45 TCGA-YD-A9TA-06 2 179640205 179640205 G A TTN Missense_Mutation p.P2129L 0.33 TCGA-YD-A9TA-06 2 179640580 179640580 C T TTN Missense_Mutation p.R2004K 0.40 TCGA-YD-A9TA-06 2 179648929 179648929 G A TTN Silent p.F881F 0.38 TCGA-YD-A9TA-06 2 179650375 179650375 G A TTN Missense_Mutation p.S822F 0.36 TCGA-YD-A9TA-06 2 179650604 179650604 C T TTN Missense_Mutation p.D781N 0.30 TCGA-YD-A9TA-06 2 179665247 179665247 G A TTN Missense_Mutation p.S153L 0.44 TCGA-YD-A9TA-06 2 179702423 179702423 C T CCDC141 Missense_Mutation p.E1175K 0.40 tolerated(0.14) benign(0) TCGA-YD-A9TA-06 2 179733913 179733913 C T CCDC141 Silent p.Q775Q 0.34 TCGA-YD-A9TA-06 2 180634301 180634301 C A ZNF385B Missense_Mutation p.R61L 0.39 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 2 182392041 182392041 C T ITGA4 Missense_Mutation p.S786L 0.32 deleterious(0.03) probably_damaging(1) TCGA-YD-A9TA-06 2 182399050 182399050 C T ITGA4 Missense_Mutation p.P946S 0.33 tolerated(0.29) benign(0.004) TCGA-YD-A9TA-06 2 183011823 183011823 C T PDE1A Missense_Mutation p.D541N 0.26 tolerated_low_confidence(0.49) benign(0.021) TCGA-YD-A9TA-06 2 183129038 183129038 C T PDE1A Missense_Mutation p.D69N 0.38 deleterious(0.03) benign(0.291) TCGA-YD-A9TA-06 2 183951788 183951788 T G DUSP19 Silent p.V98V 0.33 TCGA-YD-A9TA-06 2 185801577 185801577 C T ZNF804A Missense_Mutation p.S485F 0.39 tolerated(0.43) benign(0.004) TCGA-YD-A9TA-06 2 185802855 185802855 C T ZNF804A Missense_Mutation p.S911F 0.51 tolerated(0.64) probably_damaging(0.979) TCGA-YD-A9TA-06 2 185803658 185803658 C T ZNF804A Missense_Mutation p.P1179S 0.41 tolerated(0.05) probably_damaging(0.992) TCGA-YD-A9TA-06 2 186670593 186670593 G A FSIP2 Silent p.V5609V 0.45 TCGA-YD-A9TA-06 2 186673842 186673842 G A FSIP2 Silent p.L6692L 0.42 TCGA-YD-A9TA-06 2 18765812 18765812 C T NT5C1B Missense_Mutation p.E291K 0.56 tolerated_low_confidence(0.08) benign(0.017) TCGA-YD-A9TA-06 2 18766085 18766085 C T NT5C1B Missense_Mutation p.D200N 0.52 deleterious_low_confidence(0.02) benign(0.048) TCGA-YD-A9TA-06 2 187702148 187702148 C T ZSWIM2 Missense_Mutation p.E210K 0.33 deleterious(0) probably_damaging(0.975) TCGA-YD-A9TA-06 2 187713788 187713788 C T ZSWIM2 Missense_Mutation p.D24N 0.44 deleterious(0.04) possibly_damaging(0.521) TCGA-YD-A9TA-06 2 189849526 189849526 G A COL3A1 Silent p.A40A 0.37 TCGA-YD-A9TA-06 2 189870112 189870112 G A COL3A1 Missense_Mutation p.G990R 0.37 probably_damaging(1) TCGA-YD-A9TA-06 2 189873761 189873761 G A COL3A1 Missense_Mutation p.A1213T 0.39 unknown(0) TCGA-YD-A9TA-06 2 189906382 189906382 C T COL5A2 Missense_Mutation p.G1188E 0.42 unknown(0) TCGA-YD-A9TA-06 2 189907970 189907970 A G COL5A2 Silent p.P1126P 0.50 TCGA-YD-A9TA-06 2 190426654 190426654 C T SLC40A1 Missense_Mutation p.D556N 0.34 tolerated_low_confidence(0.33) benign(0.001) TCGA-YD-A9TA-06 2 191934455 191934455 C T STAT4 Missense_Mutation p.E170K 0.38 deleterious(0.01) possibly_damaging(0.492) TCGA-YD-A9TA-06 2 1926155 1926155 C T MYT1L Missense_Mutation p.M462I 0.45 tolerated(0.31) benign(0.026) TCGA-YD-A9TA-06 2 1926505 1926505 G A MYT1L Missense_Mutation p.P346S 0.36 tolerated_low_confidence(0.21) benign(0.03) TCGA-YD-A9TA-06 2 196651884 196651884 C T DNAH7 Silent p.K3576K 0.34 TCGA-YD-A9TA-06 2 196673469 196673469 G A DNAH7 Silent p.F3340F 0.40 TCGA-YD-A9TA-06 2 196681595 196681595 G A DNAH7 Missense_Mutation p.S3173F 0.36 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 2 196729306 196729306 G A DNAH7 Missense_Mutation p.A2358V 0.35 tolerated(0.08) benign(0.349) TCGA-YD-A9TA-06 2 196740445 196740445 C T DNAH7 Missense_Mutation p.M2080I 0.39 tolerated(0.21) benign(0.005) TCGA-YD-A9TA-06 2 196756519 196756519 C T DNAH7 Missense_Mutation p.E1636K 0.42 tolerated(0.11) benign(0.269) TCGA-YD-A9TA-06 2 196891607 196891607 C T DNAH7 Missense_Mutation p.D182N 0.28 tolerated(0.26) benign(0.022) TCGA-YD-A9TA-06 2 197010674 197010674 A T STK17B Nonsense_Mutation p.Y147* 0.41 TCGA-YD-A9TA-06 2 197065916 197065916 C T HECW2 3'UTR 0.60 TCGA-YD-A9TA-06 2 197065919 197065919 G A HECW2 3'UTR 0.60 TCGA-YD-A9TA-06 2 197183298 197183298 G A HECW2 Silent p.A772A 0.40 TCGA-YD-A9TA-06 2 197183745 197183745 C T HECW2 Silent p.E623E 0.35 TCGA-YD-A9TA-06 2 1983496 1983496 T G MYT1L Silent p.R18R 0.29 TCGA-YD-A9TA-06 2 1983497 1983497 C T MYT1L Missense_Mutation p.R18Q 0.32 deleterious(0) unknown(0) TCGA-YD-A9TA-06 2 198363503 198363503 G A HSPD1 Missense_Mutation p.R24W 0.09 deleterious(0) possibly_damaging(0.847) TCGA-YD-A9TA-06 2 198621170 198621170 C T BOLL Missense_Mutation p.M249I 0.79 tolerated(0.06) benign(0.022) TCGA-YD-A9TA-06 2 198949263 198949263 C T PLCL1 Missense_Mutation p.A341V 0.35 tolerated(0.33) benign(0.19) TCGA-YD-A9TA-06 2 198949574 198949574 G A PLCL1 Missense_Mutation p.D445N 0.38 tolerated(0.17) probably_damaging(0.986) TCGA-YD-A9TA-06 2 199011720 199011720 T C PLCL1 3'UTR 0.29 TCGA-YD-A9TA-06 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.21 tolerated(0.12) benign(0.043) TCGA-YD-A9TA-06 2 202000954 202000954 C T CFLAR Intron 0.35 TCGA-YD-A9TA-06 2 202000955 202000955 C T CFLAR Intron 0.36 TCGA-YD-A9TA-06 2 202093964 202093964 C T CASP10 3'UTR 0.54 TCGA-YD-A9TA-06 2 202343136 202343136 C T STRADB Silent p.F294F 0.38 TCGA-YD-A9TA-06 2 202469379 202469379 C T ALS2CR11 Silent p.L91L 0.42 TCGA-YD-A9TA-06 2 202571654 202571654 G A ALS2 Missense_Mutation p.R1499C 0.41 deleterious(0) possibly_damaging(0.556) TCGA-YD-A9TA-06 2 203745623 203745623 G A WDR12 Missense_Mutation p.S411F 0.46 deleterious(0.04) possibly_damaging(0.524) TCGA-YD-A9TA-06 2 205983740 205983740 A G PARD3B Missense_Mutation p.N259S 0.47 tolerated(0.1) benign(0.006) TCGA-YD-A9TA-06 2 206659716 206659716 C T NRP2 Silent p.F910F 0.57 TCGA-YD-A9TA-06 2 207175643 207175643 G A ZDBF2 Missense_Mutation p.E2131K 0.42 tolerated(1) benign(0.292) TCGA-YD-A9TA-06 2 207611022 207611022 C T MDH1B Missense_Mutation p.D449N 0.39 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 2 207833030 207833030 A G CPO Missense_Mutation p.Y274C 0.24 deleterious(0) possibly_damaging(0.84) TCGA-YD-A9TA-06 2 208865986 208865986 C T PLEKHM3 Silent p.R126R 0.39 TCGA-YD-A9TA-06 2 209007373 209007373 C T CRYGB Missense_Mutation p.D173N 0.39 deleterious(0.03) benign(0.031) TCGA-YD-A9TA-06 2 209302345 209302345 C T PTH2R Missense_Mutation p.P88S 0.20 tolerated(0.48) benign(0.005) TCGA-YD-A9TA-06 2 209315471 209315471 C T PTH2R Intron 0.38 TCGA-YD-A9TA-06 2 21228376 21228376 C T APOB Silent p.E3788E 0.34 TCGA-YD-A9TA-06 2 215279108 215279108 G A VWC2L Missense_Mutation p.G64E 0.77 deleterious(0) benign(0.375) TCGA-YD-A9TA-06 2 216283975 216283975 C T FN1 Silent p.Q603Q 0.63 TCGA-YD-A9TA-06 2 218669188 218669188 C T TNS1 Silent p.K1734K 0.77 TCGA-YD-A9TA-06 2 219754827 219754827 C T WNT10A Silent p.D166D 0.70 TCGA-YD-A9TA-06 2 219892680 219892680 C T CCDC108 Missense_Mutation p.E635K 0.64 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 2 219895966 219895966 C T CCDC108 Missense_Mutation p.G293R 0.64 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 2 219895967 219895967 C T CCDC108 Silent p.T292T 0.64 TCGA-YD-A9TA-06 2 220326675 220326675 C T SPEG Missense_Mutation p.P838S 0.73 benign(0.417) TCGA-YD-A9TA-06 2 227906894 227906894 G A COL4A4 Missense_Mutation p.P1159S 0.71 unknown(0) TCGA-YD-A9TA-06 2 227954607 227954607 C T COL4A4 Missense_Mutation p.G479E 0.74 benign(0.129) TCGA-YD-A9TA-06 2 228142261 228142261 G A COL4A3 Missense_Mutation p.G706E 0.80 unknown(0) TCGA-YD-A9TA-06 2 228144557 228144557 A T COL4A3 Missense_Mutation p.K725I 0.40 unknown(0) TCGA-YD-A9TA-06 2 228175562 228175562 G A COL4A3 Missense_Mutation p.R1609Q 0.91 unknown(0) TCGA-YD-A9TA-06 2 228855738 228855738 G A SPHKAP Missense_Mutation p.S1646F 0.64 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 2 231120195 231120195 T G SP140 Missense_Mutation p.C396W 0.73 deleterious(0.01) benign(0.303) TCGA-YD-A9TA-06 2 233321165 233321165 C T ALPI Silent p.F58F 0.81 TCGA-YD-A9TA-06 2 234357891 234357891 C T DGKD Missense_Mutation p.S586F 0.65 deleterious(0.01) benign(0.289) TCGA-YD-A9TA-06 2 234526745 234526745 G A UGT1A8 Missense_Mutation p.R131Q 0.62 tolerated(0.33) benign(0.001) TCGA-YD-A9TA-06 2 234581285 234581285 C T UGT1A9 Silent p.L235L 0.65 TCGA-YD-A9TA-06 2 234749336 234749336 G A HJURP Missense_Mutation p.S697F 0.71 deleterious(0.01) benign(0.405) TCGA-YD-A9TA-06 2 235404415 235404415 G A ARL4C 3'UTR 0.59 TCGA-YD-A9TA-06 2 238277545 238277545 C T COL6A3 Missense_Mutation p.E1521K 0.63 probably_damaging(0.965) TCGA-YD-A9TA-06 2 238494691 238494691 G A RAB17 Missense_Mutation p.A36V 0.62 tolerated(1) benign(0.335) TCGA-YD-A9TA-06 2 239098547 239098547 G T ILKAP Missense_Mutation p.S82Y 0.69 tolerated(0.14) benign(0.229) TCGA-YD-A9TA-06 2 240111565 240111565 G A HDAC4 Silent p.S101S 0.80 TCGA-YD-A9TA-06 2 240984611 240984611 C T OR6B3 Silent p.R293R 0.63 TCGA-YD-A9TA-06 2 241622268 241622268 C T AQP12B 5'UTR 0.54 TCGA-YD-A9TA-06 2 241710454 241710454 G A KIF1A Silent p.S425S 0.63 TCGA-YD-A9TA-06 2 242606140 242606140 C T ATG4B Missense_Mutation p.P207S 0.60 tolerated(0.29) benign(0.01) TCGA-YD-A9TA-06 2 242795020 242795020 G A PDCD1 Silent p.F63F 0.80 TCGA-YD-A9TA-06 2 242814347 242814347 G T CXXC11 Missense_Mutation p.D214Y 0.61 tolerated(0.1) possibly_damaging(0.447) TCGA-YD-A9TA-06 2 25141380 25141380 G A ADCY3 Silent p.F159F 0.50 TCGA-YD-A9TA-06 2 26532429 26532429 G A GPR113 3'Flank 0.44 TCGA-YD-A9TA-06 2 26698235 26698235 C T OTOF Missense_Mutation p.D1040N 0.39 tolerated(0.1) probably_damaging(0.952) TCGA-YD-A9TA-06 2 26703752 26703752 G A OTOF Missense_Mutation p.L569F 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 27257076 27257076 C T TMEM214 Missense_Mutation p.P98L 0.42 tolerated(0.84) benign(0) TCGA-YD-A9TA-06 2 27478285 27478285 G A SLC30A3 Silent p.S354S 0.42 TCGA-YD-A9TA-06 2 27480135 27480135 C T SLC30A3 Missense_Mutation p.E222K 0.18 tolerated(0.79) benign(0.004) TCGA-YD-A9TA-06 2 27745427 27745427 C T GCKR Missense_Mutation p.S558F 0.41 deleterious(0) possibly_damaging(0.88) TCGA-YD-A9TA-06 2 27800161 27800161 C T C2orf16 Missense_Mutation p.S241L 0.40 tolerated(0.11) benign(0.331) TCGA-YD-A9TA-06 2 28627090 28627090 C T FOSL2 Silent p.S73S 0.31 TCGA-YD-A9TA-06 2 28824130 28824130 C T PLB1 Silent p.F846F 0.39 TCGA-YD-A9TA-06 2 29150471 29150471 C A WDR43 Missense_Mutation p.L404M 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-YD-A9TA-06 2 29256392 29256392 C T FAM179A Silent p.L730L 0.36 TCGA-YD-A9TA-06 2 29296488 29296488 G A C2orf71 Silent p.L214L 0.39 TCGA-YD-A9TA-06 2 30974117 30974117 C T CAPN13 Missense_Mutation p.G363E 0.32 tolerated(0.53) benign(0.057) TCGA-YD-A9TA-06 2 30980963 30980963 C T CAPN13 Nonsense_Mutation p.W272* 0.33 TCGA-YD-A9TA-06 2 31467233 31467233 G A EHD3 Silent p.G107G 0.44 TCGA-YD-A9TA-06 2 31560629 31560629 C T XDH Missense_Mutation p.D1277N 0.31 tolerated(0.09) possibly_damaging(0.881) TCGA-YD-A9TA-06 2 3196254 3196254 G A TSSC1 Missense_Mutation p.S307L 0.33 deleterious(0) possibly_damaging(0.885) TCGA-YD-A9TA-06 2 32434611 32434611 C T SLC30A6 Missense_Mutation p.T329I 0.30 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 2 32449586 32449586 C T NLRC4 Missense_Mutation p.D1011N 0.38 tolerated(0.12) benign(0.388) TCGA-YD-A9TA-06 2 32476111 32476111 C T NLRC4 Missense_Mutation p.M274I 0.34 tolerated(0.19) benign(0.257) TCGA-YD-A9TA-06 2 32476646 32476646 C T NLRC4 Missense_Mutation p.G96E 0.44 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 2 32666521 32666521 C T BIRC6 Missense_Mutation p.S1312F 0.26 benign(0.259) TCGA-YD-A9TA-06 2 32740325 32740325 C T BIRC6 Missense_Mutation p.L3613F 0.49 probably_damaging(0.999) TCGA-YD-A9TA-06 2 33172758 33172758 G A LTBP1 Missense_Mutation p.G123S 0.50 tolerated_low_confidence(0.5) benign(0.012) TCGA-YD-A9TA-06 2 33586539 33586539 T G LTBP1 Silent p.P1409P 0.21 TCGA-YD-A9TA-06 2 33590504 33590504 G A LTBP1 Missense_Mutation p.E1549K 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 33622315 33622315 G A LTBP1 Silent p.G1650G 0.32 TCGA-YD-A9TA-06 2 38916959 38916959 C T GALM Missense_Mutation p.S186F 0.34 deleterious(0) probably_damaging(0.985) TCGA-YD-A9TA-06 2 39515410 39515410 G A MAP4K3 Silent p.I442I 0.40 TCGA-YD-A9TA-06 2 40405571 40405571 A C SLC8A1 Missense_Mutation p.L624R 0.41 deleterious(0) possibly_damaging(0.701) TCGA-YD-A9TA-06 2 46803734 46803734 G A RHOQ Missense_Mutation p.R134K 0.53 tolerated(1) benign(0.007) TCGA-YD-A9TA-06 2 46986331 46986331 C T SOCS5 Missense_Mutation p.P221L 0.28 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 2 47739505 47739505 C T KCNK12 3'Flank 0.41 TCGA-YD-A9TA-06 2 48808036 48808036 C T STON1-GTF2A1L Silent p.F88F 0.28 TCGA-YD-A9TA-06 2 48873769 48873769 G A STON1-GTF2A1L Missense_Mutation p.R893K 0.23 tolerated(0.69) possibly_damaging(0.505) TCGA-YD-A9TA-06 2 48914977 48914977 C T LHCGR Silent p.R653R 0.25 TCGA-YD-A9TA-06 2 48915628 48915628 C T LHCGR Silent p.G436G 0.29 TCGA-YD-A9TA-06 2 48936136 48936136 C T LHCGR Missense_Mutation p.E211K 0.30 tolerated(0.37) benign(0.005) TCGA-YD-A9TA-06 2 51255210 51255210 G A NRXN1 Missense_Mutation p.L68F 0.50 deleterious(0) possibly_damaging(0.899) TCGA-YD-A9TA-06 2 60688993 60688993 G A BCL11A Missense_Mutation p.P352S 0.25 tolerated(0.59) benign(0.044) TCGA-YD-A9TA-06 2 60780360 60780360 C T BCL11A Missense_Mutation p.E16K 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.824) TCGA-YD-A9TA-06 2 63175738 63175738 T C EHBP1 Missense_Mutation p.V621A 0.41 tolerated_low_confidence(0.22) benign(0.02) TCGA-YD-A9TA-06 2 63831894 63831894 C T MDH1 Missense_Mutation p.S206F 0.45 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 64120514 64120514 A T VPS54 3'UTR 0.30 TCGA-YD-A9TA-06 2 669539 669539 G A TMEM18 3'UTR 0.42 TCGA-YD-A9TA-06 2 68740745 68740745 C T APLF Silent p.I185I 0.44 TCGA-YD-A9TA-06 2 69046529 69046529 G A ARHGAP25 Intron 0.33 TCGA-YD-A9TA-06 2 69049790 69049790 C T ARHGAP25 Missense_Mutation p.P507S 0.25 tolerated(0.11) benign(0.396) TCGA-YD-A9TA-06 2 69172426 69172426 G A GKN2 3'UTR 0.47 TCGA-YD-A9TA-06 2 69207081 69207081 G T GKN1 Missense_Mutation p.G132C 0.39 deleterious(0.02) possibly_damaging(0.866) TCGA-YD-A9TA-06 2 70488475 70488475 C T PCYOX1 Missense_Mutation p.R151C 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 70900393 70900393 G A ADD2 Intron 0.40 TCGA-YD-A9TA-06 2 70931517 70931517 G A ADD2 Silent p.A86A 0.23 TCGA-YD-A9TA-06 2 70931586 70931586 G A ADD2 Silent p.F63F 0.18 TCGA-YD-A9TA-06 2 71043687 71043687 T G CLEC4F Missense_Mutation p.N276H 0.25 tolerated(0.06) benign(0.179) TCGA-YD-A9TA-06 2 71043951 71043951 C T CLEC4F Missense_Mutation p.E188K 0.47 tolerated(0.32) probably_damaging(0.972) TCGA-YD-A9TA-06 2 71206974 71206974 G C ANKRD53 Missense_Mutation p.G201R 0.48 deleterious(0.04) probably_damaging(0.993) TCGA-YD-A9TA-06 2 71766357 71766357 G A DYSF Missense_Mutation p.G522R 0.42 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 2 71891480 71891480 G A DYSF Missense_Mutation p.E1696K 0.46 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 2 71896829 71896829 C T DYSF Missense_Mutation p.P1913S 0.19 deleterious(0.02) probably_damaging(0.944) TCGA-YD-A9TA-06 2 71906190 71906190 C T DYSF Missense_Mutation p.S1963F 0.60 tolerated(0.91) benign(0.003) TCGA-YD-A9TA-06 2 72945428 72945428 G A EXOC6B Missense_Mutation p.P158L 0.55 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 73302670 73302670 G A RAB11FIP5 Silent p.I647I 0.25 TCGA-YD-A9TA-06 2 73678075 73678075 C T ALMS1 Missense_Mutation p.P1473L 0.62 benign(0.222) TCGA-YD-A9TA-06 2 74040690 74040690 G A C2orf78 Missense_Mutation p.G62R 0.57 deleterious(0.03) probably_damaging(0.991) TCGA-YD-A9TA-06 2 74542142 74542142 C T SLC4A5 Silent p.V3V 0.27 TCGA-YD-A9TA-06 2 74834206 74834206 G A M1AP Missense_Mutation p.P191S 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-YD-A9TA-06 2 79312645 79312645 A T REG1B Missense_Mutation p.Y136N 0.23 deleterious(0) possibly_damaging(0.814) TCGA-YD-A9TA-06 2 79363936 79363936 C T REG1P RNA 0.32 TCGA-YD-A9TA-06 2 79386625 79386625 C T REG3A 5'UTR 0.60 TCGA-YD-A9TA-06 2 80773157 80773157 C T CTNNA2 Silent p.I503I 0.23 TCGA-YD-A9TA-06 2 80773175 80773175 C T CTNNA2 Silent p.F509F 0.58 TCGA-YD-A9TA-06 2 84804416 84804416 C T DNAH6 Missense_Mutation p.H654Y 0.41 tolerated(0.5) benign(0.37) TCGA-YD-A9TA-06 2 85051106 85051106 G A TRABD2A Silent p.F386F 0.42 TCGA-YD-A9TA-06 2 85925812 85925812 C T GNLY 3'UTR 0.48 TCGA-YD-A9TA-06 2 86459864 86459864 C T REEP1 Missense_Mutation p.R167K 0.46 tolerated(0.17) benign(0.313) TCGA-YD-A9TA-06 2 87042837 87042837 G A CD8B Nonsense_Mutation p.Q209* 0.41 TCGA-YD-A9TA-06 2 88874620 88874620 G A EIF2AK3 Missense_Mutation p.P794L 0.46 deleterious(0.02) benign(0.002) TCGA-YD-A9TA-06 2 89036173 89036173 C T RPIA Nonsense_Mutation p.R240* 0.47 TCGA-YD-A9TA-06 2 89265944 89265944 C T IGKV1-6 Missense_Mutation p.G63E 0.35 deleterious(0.02) benign(0.316) TCGA-YD-A9TA-06 2 89265945 89265945 C T IGKV1-6 Missense_Mutation p.G63R 0.36 deleterious(0.01) possibly_damaging(0.619) TCGA-YD-A9TA-06 2 89292010 89292010 C T IGKV1-8 Missense_Mutation p.G88E 0.40 deleterious(0.03) possibly_damaging(0.632) TCGA-YD-A9TA-06 2 89292395 89292395 C T IGKV1-8 Translation_Start_Site p.M1? 0.36 deleterious(0.01) possibly_damaging(0.574) TCGA-YD-A9TA-06 2 89327186 89327186 C T IGKV3-11 5'UTR 0.47 TCGA-YD-A9TA-06 2 8938355 8938355 G A KIDINS220 Missense_Mutation p.P326S 0.29 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 2 90077800 90077800 C G IGKV3D-20 Silent p.L8L 0.31 TCGA-YD-A9TA-06 2 95481254 95481254 G A ANKRD20A8P RNA 0.32 TCGA-YD-A9TA-06 2 95541342 95541342 G A TEKT4 Missense_Mutation p.E316K 0.27 tolerated(0.06) possibly_damaging(0.649) TCGA-YD-A9TA-06 2 95815134 95815134 G A ZNF514 Missense_Mutation p.H366Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 96078467 96078467 C T FAHD2A Silent p.T279T 0.29 TCGA-YD-A9TA-06 2 96687948 96687948 C T GPAT2 Missense_Mutation p.E783K 0.57 tolerated(0.05) possibly_damaging(0.486) TCGA-YD-A9TA-06 2 96692026 96692026 C T GPAT2 Missense_Mutation p.G354R 0.23 tolerated(0.37) unknown(0) TCGA-YD-A9TA-06 2 96781697 96781697 G A ADRA2B Silent p.L64L 0.44 TCGA-YD-A9TA-06 2 96858127 96858127 G A STARD7 Missense_Mutation p.P275S 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 2 98349794 98349794 C T ZAP70 Silent p.S275S 0.27 TCGA-YD-A9TA-06 2 99181111 99181111 C T INPP4A Silent p.A684A 0.38 TCGA-YD-A9TA-06 2 99454589 99454589 C T KIAA1211L Missense_Mutation p.E78K 0.37 deleterious(0.02) possibly_damaging(0.486) TCGA-YD-A9TA-06 2 99912157 99912157 C T LYG1 5'UTR 0.31 TCGA-YD-A9TA-06 3 10108982 10108982 C T FANCD2 Silent p.I825I 0.32 TCGA-YD-A9TA-06 3 10123015 10123015 C T FANCD2 Intron 0.38 TCGA-YD-A9TA-06 3 101520435 101520435 C T NXPE3 Silent p.S150S 0.37 TCGA-YD-A9TA-06 3 101574586 101574586 C T NFKBIZ Missense_Mutation p.P555L 0.43 deleterious(0.01) possibly_damaging(0.728) TCGA-YD-A9TA-06 3 101578208 101578208 C T NFKBIZ Missense_Mutation p.P717L 0.28 tolerated(0.17) benign(0.081) TCGA-YD-A9TA-06 3 102157422 102157422 C T ZPLD1 Missense_Mutation p.H47Y 0.33 tolerated(0.06) benign(0.074) TCGA-YD-A9TA-06 3 102195860 102195860 G A ZPLD1 Silent p.E365E 0.43 TCGA-YD-A9TA-06 3 102196413 102196413 G A ZPLD1 Missense_Mutation p.G416E 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-YD-A9TA-06 3 10268069 10268069 C T IRAK2 Silent p.V408V 0.39 TCGA-YD-A9TA-06 3 10401580 10401580 C T ATP2B2 Silent p.E629E 0.17 TCGA-YD-A9TA-06 3 105439094 105439094 C T CBLB Missense_Mutation p.E402K 0.45 deleterious(0.05) possibly_damaging(0.671) TCGA-YD-A9TA-06 3 105439095 105439095 C T CBLB Splice_Site p.X402_splice 0.45 TCGA-YD-A9TA-06 3 107096681 107096681 C T CCDC54 Nonsense_Mutation p.Q83* 0.29 TCGA-YD-A9TA-06 3 107492391 107492391 C T BBX Missense_Mutation p.S608F 0.43 deleterious(0.03) benign(0.002) TCGA-YD-A9TA-06 3 108072559 108072559 G A HHLA2 Missense_Mutation p.G117E 0.32 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 108129532 108129532 C T MYH15 Missense_Mutation p.E1485K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 3 108220589 108220589 C T MYH15 Silent p.L123L 0.29 TCGA-YD-A9TA-06 3 108475916 108475916 G A RETNLB Silent p.L39L 0.38 TCGA-YD-A9TA-06 3 108572777 108572777 G A TRAT1 3'UTR 0.27 TCGA-YD-A9TA-06 3 10861262 10861262 G A SLC6A11 Silent p.R123R 0.43 TCGA-YD-A9TA-06 3 108677713 108677713 G A MORC1 3'UTR 0.46 TCGA-YD-A9TA-06 3 109028145 109028145 C T DPPA2 Missense_Mutation p.A72T 0.26 tolerated(0.33) benign(0.098) TCGA-YD-A9TA-06 3 11067975 11067975 C T SLC6A1 Silent p.F336F 0.32 TCGA-YD-A9TA-06 3 111312580 111312580 C T ZBED2 Missense_Mutation p.E157K 0.27 deleterious(0) benign(0.02) TCGA-YD-A9TA-06 3 111564752 111564752 G A PLCXD2 3'UTR 0.27 TCGA-YD-A9TA-06 3 111664178 111664178 C T PHLDB2 Missense_Mutation p.P821S 0.28 tolerated(0.09) benign(0.171) TCGA-YD-A9TA-06 3 111775962 111775962 G A TMPRSS7 Missense_Mutation p.E306K 0.51 tolerated(1) benign(0.013) TCGA-YD-A9TA-06 3 111921226 111921226 C T SLC9C1 Silent p.L731L 0.33 TCGA-YD-A9TA-06 3 111927132 111927132 G A SLC9C1 Missense_Mutation p.P627S 0.51 deleterious(0) possibly_damaging(0.876) TCGA-YD-A9TA-06 3 112066493 112066493 C T CD200 Silent p.V195V 0.62 TCGA-YD-A9TA-06 3 112358473 112358473 G A CCDC80 Missense_Mutation p.R94C 0.23 deleterious_low_confidence(0.01) benign(0.001) TCGA-YD-A9TA-06 3 11301462 11301462 G A HRH1 Missense_Mutation p.D247N 0.53 tolerated(0.55) benign(0.109) TCGA-YD-A9TA-06 3 11301656 11301656 G A HRH1 Silent p.Q311Q 0.34 TCGA-YD-A9TA-06 3 113375235 113375235 G A KIAA2018 Missense_Mutation p.S1765L 0.68 benign(0.309) TCGA-YD-A9TA-06 3 113619892 113619892 G A GRAMD1C Silent p.Q185Q 0.20 TCGA-YD-A9TA-06 3 113765570 113765570 T G KIAA1407 Missense_Mutation p.K47Q 0.36 tolerated(1) benign(0.281) TCGA-YD-A9TA-06 3 118865914 118865914 G A C3orf30 Missense_Mutation p.R293K 0.59 tolerated(1) probably_damaging(0.91) TCGA-YD-A9TA-06 3 119434428 119434428 C T MAATS1 Missense_Mutation p.P174S 0.43 tolerated(0.5) benign(0.002) TCGA-YD-A9TA-06 3 119526276 119526276 G A NR1I2 Missense_Mutation p.G99E 0.40 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 120050030 120050030 A G LRRC58 3'UTR 0.11 TCGA-YD-A9TA-06 3 121001165 121001165 G A STXBP5L Silent p.R721R 0.23 TCGA-YD-A9TA-06 3 121228422 121228422 G A POLQ Missense_Mutation p.H649Y 0.11 deleterious(0) possibly_damaging(0.808) TCGA-YD-A9TA-06 3 121305240 121305240 C T ARGFX Silent p.F247F 0.48 TCGA-YD-A9TA-06 3 121340778 121340778 G A FBXO40 Missense_Mutation p.E168K 0.22 tolerated(0.12) benign(0.197) TCGA-YD-A9TA-06 3 121712140 121712140 C T ILDR1 Missense_Mutation p.E486K 0.29 tolerated(0.26) benign(0.011) TCGA-YD-A9TA-06 3 121712500 121712500 C G ILDR1 Missense_Mutation p.E366Q 0.65 tolerated(0.09) benign(0.009) TCGA-YD-A9TA-06 3 121838426 121838426 C T CD86 3'UTR 0.17 TCGA-YD-A9TA-06 3 122000996 122000996 G A CASR Missense_Mutation p.G559R 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 3 122002955 122002955 G A CASR Nonsense_Mutation p.W728* 0.17 TCGA-YD-A9TA-06 3 122420367 122420367 C T PARP14 Missense_Mutation p.P989L 0.39 tolerated(0.12) benign(0.037) TCGA-YD-A9TA-06 3 122631756 122631756 T G SEMA5B Missense_Mutation p.N941H 0.20 tolerated(0.45) possibly_damaging(0.601) TCGA-YD-A9TA-06 3 123036871 123036871 G A ADCY5 Missense_Mutation p.P784S 0.48 deleterious(0.03) possibly_damaging(0.88) TCGA-YD-A9TA-06 3 123419567 123419567 C T MYLK Silent p.K916K 0.66 TCGA-YD-A9TA-06 3 123452570 123452570 C T MYLK Missense_Mutation p.V425I 0.44 tolerated(0.05) possibly_damaging(0.534) TCGA-YD-A9TA-06 3 123452571 123452571 C A MYLK Missense_Mutation p.E424D 0.44 tolerated(0.06) possibly_damaging(0.476) TCGA-YD-A9TA-06 3 123665920 123665920 G A CCDC14 Nonsense_Mutation p.R318* 0.24 TCGA-YD-A9TA-06 3 123813628 123813628 G A KALRN 5'UTR 0.17 TCGA-YD-A9TA-06 3 124153258 124153258 C T KALRN Silent p.A976A 0.52 TCGA-YD-A9TA-06 3 124165040 124165040 C T KALRN Missense_Mutation p.R1114C 0.11 deleterious(0.03) probably_damaging(0.975) TCGA-YD-A9TA-06 3 124351470 124351470 C T KALRN Missense_Mutation p.R97C 0.28 tolerated(0.05) benign(0.009) TCGA-YD-A9TA-06 3 124438330 124438330 C T RP11-71H17.7 5'Flank 0.33 TCGA-YD-A9TA-06 3 124560369 124560369 G A ITGB5 Missense_Mutation p.S214F 0.36 deleterious(0.01) probably_damaging(0.974) TCGA-YD-A9TA-06 3 128631623 128631623 C T ACAD9 3'UTR 0.44 TCGA-YD-A9TA-06 3 128849407 128849407 G A ISY1 Missense_Mutation p.P268S 0.45 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 3 128890001 128890001 G A CNBP Missense_Mutation p.H115Y 0.37 deleterious(0.02) possibly_damaging(0.447) TCGA-YD-A9TA-06 3 130305432 130305432 G A COL6A6 Silent p.G1351G 0.30 TCGA-YD-A9TA-06 3 130881320 130881320 G A NEK11 Missense_Mutation p.R344K 0.31 tolerated(0.06) probably_damaging(0.925) TCGA-YD-A9TA-06 3 130889617 130889617 G T NEK11 Nonsense_Mutation p.E429* 0.34 TCGA-YD-A9TA-06 3 133169222 133169222 G A BFSP2 Missense_Mutation p.D269N 0.36 tolerated(0.09) benign(0.395) TCGA-YD-A9TA-06 3 133661557 133661557 G A SLCO2A1 Missense_Mutation p.S506L 0.32 deleterious(0.02) possibly_damaging(0.57) TCGA-YD-A9TA-06 3 133667387 133667387 G A SLCO2A1 Silent p.F366F 0.29 TCGA-YD-A9TA-06 3 134338059 134338059 G A KY Missense_Mutation p.P214L 0.31 deleterious(0.01) possibly_damaging(0.882) TCGA-YD-A9TA-06 3 136664664 136664664 C T NCK1 Missense_Mutation p.P156S 0.36 deleterious(0) probably_damaging(0.951) TCGA-YD-A9TA-06 3 136710931 136710931 G A IL20RB Splice_Site p.X228_splice 0.25 TCGA-YD-A9TA-06 3 138170917 138170917 G A ESYT3 Missense_Mutation p.E119K 0.32 deleterious(0) benign(0.355) TCGA-YD-A9TA-06 3 138189791 138189791 G A ESYT3 Missense_Mutation p.D555N 0.29 tolerated(0.21) benign(0.016) TCGA-YD-A9TA-06 3 138192465 138192465 C T ESYT3 Silent p.I775I 0.39 TCGA-YD-A9TA-06 3 13860379 13860379 G A WNT7A 3'UTR 0.46 TCGA-YD-A9TA-06 3 138739068 138739068 G A PRR23B Missense_Mutation p.P146S 0.19 tolerated(0.18) possibly_damaging(0.642) TCGA-YD-A9TA-06 3 141162231 141162231 C T ZBTB38 Missense_Mutation p.A334V 0.33 tolerated(0.15) benign(0.002) TCGA-YD-A9TA-06 3 141162232 141162232 C T ZBTB38 Silent p.A334A 0.32 TCGA-YD-A9TA-06 3 141277767 141277767 C T RASA2 Nonsense_Mutation p.Q242* 0.42 TCGA-YD-A9TA-06 3 141331132 141331132 C T RASA2 Missense_Mutation p.P843S 0.27 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 3 141499546 141499546 C G GRK7 Missense_Mutation p.R315G 0.41 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 3 142408637 142408637 G A PLS1 Missense_Mutation p.D387N 0.20 tolerated(0.13) benign(0.033) TCGA-YD-A9TA-06 3 142681444 142681444 G A PAQR9 Silent p.F245F 0.39 TCGA-YD-A9TA-06 3 1427481 1427481 C T CNTN6 Missense_Mutation p.P902S 0.54 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 3 143293006 143293006 G A SLC9A9 Silent p.F308F 0.28 TCGA-YD-A9TA-06 3 146171829 146171829 G A PLSCR2 Missense_Mutation p.P221L 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-YD-A9TA-06 3 147128701 147128701 A C ZIC1 Missense_Mutation p.N268H 0.22 deleterious(0.02) probably_damaging(0.975) TCGA-YD-A9TA-06 3 14756908 14756908 G A C3orf20 Missense_Mutation p.E476K 0.48 tolerated(0.07) benign(0.287) TCGA-YD-A9TA-06 3 148545790 148545790 G A CPB1 Missense_Mutation p.E25K 0.55 deleterious(0.04) benign(0.179) TCGA-YD-A9TA-06 3 148899832 148899832 C T CP Silent p.G838G 0.10 TCGA-YD-A9TA-06 3 149093514 149093514 C T TM4SF1 Missense_Mutation p.D74N 0.20 tolerated(0.16) benign(0.057) TCGA-YD-A9TA-06 3 150264576 150264576 C T EIF2A 5'UTR 0.21 TCGA-YD-A9TA-06 3 151055635 151055635 A C P2RY12 Silent p.G333G 0.19 TCGA-YD-A9TA-06 3 151055862 151055862 G A P2RY12 Missense_Mutation p.P258S 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 3 151056274 151056274 G A P2RY12 Silent p.I120I 0.55 TCGA-YD-A9TA-06 3 151056490 151056490 C T P2RY12 Silent p.R48R 0.23 TCGA-YD-A9TA-06 3 151105789 151105789 C T MED12L Silent p.L1725L 0.19 TCGA-YD-A9TA-06 3 151165546 151165546 C T IGSF10 Silent p.R741R 0.15 TCGA-YD-A9TA-06 3 151171287 151171287 G A IGSF10 Silent p.L200L 0.19 TCGA-YD-A9TA-06 3 151458446 151458446 G A AADACL2 Missense_Mutation p.E51K 0.52 deleterious(0.01) probably_damaging(0.929) TCGA-YD-A9TA-06 3 151458463 151458463 G A AADACL2 Missense_Mutation p.M56I 0.31 tolerated(0.43) benign(0.015) TCGA-YD-A9TA-06 3 152150667 152150667 T G MBNL1 Silent p.A169A 0.50 TCGA-YD-A9TA-06 3 154860046 154860046 C T MME Missense_Mutation p.S372F 0.53 deleterious(0.04) possibly_damaging(0.821) TCGA-YD-A9TA-06 3 154860047 154860047 C T MME Silent p.S372S 0.52 TCGA-YD-A9TA-06 3 155206485 155206485 C T PLCH1 Missense_Mutation p.G823R 0.28 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 155208573 155208573 C T PLCH1 Missense_Mutation p.G786R 0.37 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 155547523 155547523 C G SLC33A1 Missense_Mutation p.C479S 0.27 deleterious(0.02) possibly_damaging(0.831) TCGA-YD-A9TA-06 3 155838554 155838554 G A KCNAB1 Missense_Mutation p.E52K 0.32 tolerated_low_confidence(0.83) benign(0.002) TCGA-YD-A9TA-06 3 156763218 156763218 G A LEKR1 Silent p.L586L 0.21 TCGA-YD-A9TA-06 3 157816070 157816070 G A SHOX2 Nonsense_Mutation p.Q272* 0.13 TCGA-YD-A9TA-06 3 159605563 159605563 A T IQCJ-SCHIP1 Missense_Mutation p.M431L 0.22 tolerated(0.16) benign(0.305) TCGA-YD-A9TA-06 3 160786735 160786735 G A PPM1L Silent p.K291K 0.26 TCGA-YD-A9TA-06 3 164714560 164714560 C T SI Missense_Mutation p.G1514D 0.21 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 3 164767581 164767581 G A SI Missense_Mutation p.P532L 0.53 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 3 166958536 166958536 C T ZBBX 3'UTR 0.30 TCGA-YD-A9TA-06 3 167183359 167183359 C T SERPINI2 Missense_Mutation p.R194K 0.22 deleterious(0.01) benign(0.257) TCGA-YD-A9TA-06 3 167183361 167183361 G A SERPINI2 Silent p.F193F 0.45 TCGA-YD-A9TA-06 3 169526432 169526432 C T LRRC34 Missense_Mutation p.E81K 0.22 tolerated(0.41) benign(0.024) TCGA-YD-A9TA-06 3 169539850 169539850 C T LRRIQ4 Silent p.F47F 0.31 TCGA-YD-A9TA-06 3 169540249 169540249 C T LRRIQ4 Silent p.F180F 0.19 TCGA-YD-A9TA-06 3 169540285 169540285 C T LRRIQ4 Silent p.I192I 0.61 TCGA-YD-A9TA-06 3 169566061 169566061 G A LRRC31 Missense_Mutation p.H392Y 0.24 tolerated(0.36) benign(0.005) TCGA-YD-A9TA-06 3 169574647 169574647 C A LRRC31 Missense_Mutation p.E167D 0.16 tolerated(0.28) benign(0.015) TCGA-YD-A9TA-06 3 169637341 169637341 C T SAMD7 Missense_Mutation p.P19S 0.20 deleterious(0.04) probably_damaging(0.957) TCGA-YD-A9TA-06 3 169644361 169644361 C T SAMD7 Missense_Mutation p.A104V 0.43 deleterious(0) benign(0.412) TCGA-YD-A9TA-06 3 170140967 170140967 C T CLDN11 Silent p.C81C 0.21 TCGA-YD-A9TA-06 3 170216647 170216647 G A SLC7A14 Missense_Mutation p.L190F 0.50 tolerated(0.71) benign(0.042) TCGA-YD-A9TA-06 3 170802922 170802922 C T TNIK Missense_Mutation p.E995K 0.36 tolerated(0.81) benign(0.109) TCGA-YD-A9TA-06 3 17202628 17202628 G A TBC1D5 Missense_Mutation p.R761C 0.50 tolerated_low_confidence(0.12) benign(0.001) TCGA-YD-A9TA-06 3 172224480 172224480 A G TNFSF10 Silent p.Y216Y 0.22 TCGA-YD-A9TA-06 3 17226572 17226572 C T TBC1D5 Intron 0.59 TCGA-YD-A9TA-06 3 172607232 172607232 G A SPATA16 3'UTR 0.19 TCGA-YD-A9TA-06 3 174814782 174814782 C T NAALADL2 Silent p.L82L 0.25 TCGA-YD-A9TA-06 3 178543409 178543409 C T KCNMB2 Silent p.L30L 0.46 TCGA-YD-A9TA-06 3 178543493 178543493 C T KCNMB2 Silent p.S58S 0.30 TCGA-YD-A9TA-06 3 180320091 180320091 G A TTC14 Silent p.G14G 0.15 TCGA-YD-A9TA-06 3 182751863 182751863 G A MCCC1 Nonsense_Mutation p.Q533* 0.21 TCGA-YD-A9TA-06 3 182941205 182941205 G A MCF2L2 Missense_Mutation p.H744Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 183014738 183014738 G A MCF2L2 Intron 0.61 TCGA-YD-A9TA-06 3 183695342 183695342 G A ABCC5 Missense_Mutation p.S456F 0.20 deleterious(0) benign(0.444) TCGA-YD-A9TA-06 3 183756374 183756374 G A HTR3D Missense_Mutation p.G366E 0.54 tolerated(0.58) benign(0.163) TCGA-YD-A9TA-06 3 184008402 184008402 C T ECE2 Silent p.I689I 0.33 TCGA-YD-A9TA-06 3 184024551 184024551 C T PSMD2 Silent p.L655L 0.45 TCGA-YD-A9TA-06 3 184100605 184100605 G A CHRD Intron 0.16 TCGA-YD-A9TA-06 3 184100660 184100660 C T CHRD Silent p.P333P 0.21 TCGA-YD-A9TA-06 3 184290552 184290552 C T EPHB3 Silent p.F148F 0.49 TCGA-YD-A9TA-06 3 185316753 185316753 C T SENP2 Missense_Mutation p.S100L 0.51 deleterious(0) benign(0.159) TCGA-YD-A9TA-06 3 186394845 186394845 A C HRG Missense_Mutation p.N251H 0.24 deleterious(0) possibly_damaging(0.703) TCGA-YD-A9TA-06 3 186792107 186792107 C T ST6GAL1 Missense_Mutation p.S322F 0.54 probably_damaging(0.999) TCGA-YD-A9TA-06 3 188327463 188327463 C T LPP Missense_Mutation p.P315L 0.21 deleterious(0.01) benign(0.092) TCGA-YD-A9TA-06 3 189607201 189607201 C T TP63 Missense_Mutation p.P527L 0.48 tolerated(0.28) benign(0.276) TCGA-YD-A9TA-06 3 189607216 189607216 C T TP63 Missense_Mutation p.P532L 0.27 tolerated(0.12) benign(0.034) TCGA-YD-A9TA-06 3 189700855 189700855 A T LEPREL1 Missense_Mutation p.I435K 0.32 tolerated(0.37) benign(0.004) TCGA-YD-A9TA-06 3 189702354 189702354 C T LEPREL1 Missense_Mutation p.R405Q 0.23 deleterious(0.02) possibly_damaging(0.806) TCGA-YD-A9TA-06 3 190026139 190026139 C T CLDN1 Missense_Mutation p.R188Q 0.53 tolerated(0.39) unknown(0) TCGA-YD-A9TA-06 3 190967900 190967900 C T OSTN Missense_Mutation p.S131F 0.30 deleterious(0) probably_damaging(0.923) TCGA-YD-A9TA-06 3 190967901 190967901 C T OSTN Silent p.S131S 0.30 TCGA-YD-A9TA-06 3 192126057 192126057 C T FGF12 5'UTR 0.65 TCGA-YD-A9TA-06 3 193129999 193129999 C T ATP13A4 Missense_Mutation p.G1059E 0.28 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 193130121 193130121 G A ATP13A4 Silent p.T1018T 0.15 TCGA-YD-A9TA-06 3 193177013 193177013 C T ATP13A4 Missense_Mutation p.E511K 0.28 tolerated(0.7) benign(0.011) TCGA-YD-A9TA-06 3 193220350 193220350 G A ATP13A4 Missense_Mutation p.P105S 0.49 tolerated(0.35) benign(0.016) TCGA-YD-A9TA-06 3 194062885 194062885 G A CPN2 Nonsense_Mutation p.Q183* 0.22 TCGA-YD-A9TA-06 3 194080534 194080534 C T LRRC15 Silent p.G419G 0.26 TCGA-YD-A9TA-06 3 194081019 194081019 G A LRRC15 Silent p.L258L 0.25 TCGA-YD-A9TA-06 3 194158161 194158161 G A ATP13A3 Silent p.F626F 0.32 TCGA-YD-A9TA-06 3 195497187 195497187 C T MUC4 Nonsense_Mutation p.W4433* 0.31 TCGA-YD-A9TA-06 3 195517213 195517213 G A MUC4 Missense_Mutation p.S413F 0.52 unknown(0) TCGA-YD-A9TA-06 3 196198996 196198996 G A RNF168 Silent p.S470S 0.42 TCGA-YD-A9TA-06 3 196214383 196214383 A G RNF168 Silent p.L149L 0.44 TCGA-YD-A9TA-06 3 21552378 21552378 G A ZNF385D Silent p.T138T 0.23 TCGA-YD-A9TA-06 3 21606157 21606157 G A ZNF385D Missense_Mutation p.A62V 0.40 deleterious(0) probably_damaging(0.935) TCGA-YD-A9TA-06 3 25654107 25654107 G A TOP2B Nonsense_Mutation p.Q1224* 0.24 TCGA-YD-A9TA-06 3 32860221 32860221 G A TRIM71 Missense_Mutation p.E217K 0.61 deleterious(0.01) probably_damaging(0.922) TCGA-YD-A9TA-06 3 33580318 33580318 G A CLASP2 Missense_Mutation p.P1182L 0.21 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 35725520 35725520 G A ARPP21 Intron 0.12 TCGA-YD-A9TA-06 3 36570403 36570403 G A STAC Missense_Mutation p.E346K 0.50 deleterious(0.03) possibly_damaging(0.849) TCGA-YD-A9TA-06 3 36779161 36779161 T G DCLK3 Missense_Mutation p.E330D 0.56 deleterious(0.05) benign(0.059) TCGA-YD-A9TA-06 3 36871054 36871054 C T TRANK1 Splice_Site p.X2893_splice 0.49 TCGA-YD-A9TA-06 3 36872435 36872435 T G TRANK1 Missense_Mutation p.K2836T 0.33 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 36873585 36873585 C T TRANK1 Missense_Mutation p.D2453N 0.29 tolerated(0.09) benign(0.009) TCGA-YD-A9TA-06 3 36884132 36884132 G A TRANK1 Missense_Mutation p.A1710V 0.14 tolerated(0.07) benign(0.41) TCGA-YD-A9TA-06 3 36897228 36897228 C T TRANK1 Missense_Mutation p.E1285K 0.26 deleterious(0) probably_damaging(0.972) TCGA-YD-A9TA-06 3 369855 369855 C T CHL1 Missense_Mutation p.S68L 0.20 tolerated(0.13) benign(0.002) TCGA-YD-A9TA-06 3 37363237 37363237 G A GOLGA4 Missense_Mutation p.E543K 0.49 probably_damaging(0.952) TCGA-YD-A9TA-06 3 38039174 38039174 C T VILL Silent p.Y254Y 0.39 TCGA-YD-A9TA-06 3 38040489 38040489 C T VILL Silent p.L343L 0.41 TCGA-YD-A9TA-06 3 38129831 38129831 C G DLEC1 Missense_Mutation p.I539M 0.46 deleterious(0) probably_damaging(0.979) TCGA-YD-A9TA-06 3 38136388 38136388 C T DLEC1 Silent p.F646F 0.44 TCGA-YD-A9TA-06 3 38158337 38158337 G A DLEC1 Missense_Mutation p.G1379E 0.46 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 3 382542 382542 C T CHL1 Missense_Mutation p.L151F 0.41 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 38347597 38347597 G A SLC22A14 Missense_Mutation p.G27E 0.59 tolerated(0.28) benign(0.001) TCGA-YD-A9TA-06 3 38355223 38355223 C T SLC22A14 Missense_Mutation p.T390I 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-YD-A9TA-06 3 38357110 38357110 G A SLC22A14 Silent p.T480T 0.55 TCGA-YD-A9TA-06 3 38454513 38454513 C T XYLB 3'UTR 0.48 TCGA-YD-A9TA-06 3 38592466 38592466 C T SCN5A Silent p.E1799E 0.28 TCGA-YD-A9TA-06 3 38595974 38595974 G A SCN5A Silent p.L1537L 0.25 TCGA-YD-A9TA-06 3 38597177 38597177 C T SCN5A Silent p.K1504K 0.42 TCGA-YD-A9TA-06 3 38645271 38645271 C T SCN5A Missense_Mutation p.D608N 0.70 tolerated(0.57) benign(0.056) TCGA-YD-A9TA-06 3 38648230 38648230 G A SCN5A Missense_Mutation p.S357F 0.53 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TA-06 3 38651243 38651243 G A SCN5A Missense_Mutation p.L306F 0.35 tolerated(0.73) benign(0.041) TCGA-YD-A9TA-06 3 38739977 38739977 G A SCN10A Silent p.A1578A 0.52 TCGA-YD-A9TA-06 3 38743483 38743483 C T SCN10A Missense_Mutation p.E1502K 0.55 tolerated(0.68) benign(0.003) TCGA-YD-A9TA-06 3 38748815 38748815 C T SCN10A Silent p.K1447K 0.46 TCGA-YD-A9TA-06 3 38768526 38768526 G A SCN10A Silent p.I886I 0.61 TCGA-YD-A9TA-06 3 38770144 38770144 G A SCN10A Silent p.F843F 0.61 TCGA-YD-A9TA-06 3 38783916 38783916 G A SCN10A Missense_Mutation p.L658F 0.26 deleterious(0.02) benign(0.053) TCGA-YD-A9TA-06 3 38805000 38805000 G A SCN10A Silent p.I229I 0.43 TCGA-YD-A9TA-06 3 38888179 38888179 G C SCN11A 3'UTR 0.46 TCGA-YD-A9TA-06 3 38889110 38889110 C T SCN11A Missense_Mutation p.R1484K 0.52 deleterious(0.02) probably_damaging(0.997) TCGA-YD-A9TA-06 3 38949488 38949488 C T SCN11A Silent p.G475G 0.55 TCGA-YD-A9TA-06 3 39162558 39162558 C T TTC21A Missense_Mutation p.S332L 0.48 tolerated(0.08) benign(0.1) TCGA-YD-A9TA-06 3 39225666 39225666 C T XIRP1 Silent p.G1757G 0.51 TCGA-YD-A9TA-06 3 39435948 39435948 A G SLC25A38 Missense_Mutation p.I225V 0.50 tolerated(0.65) benign(0.012) TCGA-YD-A9TA-06 3 39554882 39554882 G A MOBP Missense_Mutation p.R72K 0.47 tolerated_low_confidence(0.07) benign(0.002) TCGA-YD-A9TA-06 3 40085584 40085584 A T MYRIP Missense_Mutation p.I52F 0.39 tolerated(0.11) probably_damaging(0.998) TCGA-YD-A9TA-06 3 41657159 41657159 C T ULK4 Splice_Site p.X1040_splice 0.52 TCGA-YD-A9TA-06 3 41657201 41657201 C T ULK4 Missense_Mutation p.E1027K 0.46 tolerated(0.4) benign(0.008) TCGA-YD-A9TA-06 3 41746578 41746578 G A ULK4 Missense_Mutation p.P918S 0.41 deleterious(0.02) probably_damaging(0.992) TCGA-YD-A9TA-06 3 425531 425531 C T CHL1 Nonsense_Mutation p.Q737* 0.53 TCGA-YD-A9TA-06 3 42906093 42906093 C T ACKR2 Silent p.F33F 0.52 TCGA-YD-A9TA-06 3 42916675 42916675 G A CYP8B1 Missense_Mutation p.L212F 0.17 tolerated(0.08) probably_damaging(0.912) TCGA-YD-A9TA-06 3 42916742 42916742 C T CYP8B1 Silent p.T189T 0.54 TCGA-YD-A9TA-06 3 443321 443321 A C CHL1 Missense_Mutation p.E1133A 0.60 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 44884646 44884646 C T KIF15 Silent p.R1205R 0.27 TCGA-YD-A9TA-06 3 44926849 44926849 C T TGM4 Nonsense_Mutation p.Q18* 0.43 TCGA-YD-A9TA-06 3 45030640 45030640 C T EXOSC7 Silent p.L22L 0.42 TCGA-YD-A9TA-06 3 45127260 45127260 G A CDCP1 Missense_Mutation p.P794L 0.54 tolerated_low_confidence(0.24) benign(0.006) TCGA-YD-A9TA-06 3 45127261 45127261 G A CDCP1 Missense_Mutation p.P794S 0.51 tolerated_low_confidence(0.38) benign(0.005) TCGA-YD-A9TA-06 3 45942851 45942851 G A CCR9 Missense_Mutation p.E191K 0.29 tolerated(0.53) benign(0.005) TCGA-YD-A9TA-06 3 45972615 45972615 G A FYCO1 Missense_Mutation p.S1400F 0.16 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 46245738 46245738 G A CCR1 Missense_Mutation p.P23S 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-YD-A9TA-06 3 46399621 46399621 C T CCR2 Silent p.F201F 0.32 TCGA-YD-A9TA-06 3 46415444 46415444 G A CCR5 Missense_Mutation p.G351S 0.45 deleterious(0.04) benign(0.213) TCGA-YD-A9TA-06 3 46415445 46415445 G A CCR5 Missense_Mutation p.G351D 0.45 deleterious(0.04) possibly_damaging(0.824) TCGA-YD-A9TA-06 3 46619331 46619331 G A TDGF1 5'UTR 0.25 TCGA-YD-A9TA-06 3 46724725 46724725 G A ALS2CL Missense_Mutation p.S335F 0.62 deleterious(0.02) benign(0.221) TCGA-YD-A9TA-06 3 46784478 46784478 G A PRSS45 Silent p.S126S 0.15 TCGA-YD-A9TA-06 3 47040859 47040859 C T NBEAL2 Missense_Mutation p.L1200F 0.29 deleterious(0) possibly_damaging(0.703) TCGA-YD-A9TA-06 3 47044560 47044560 G A NBEAL2 Missense_Mutation p.R1858Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 3 4704837 4704837 A G ITPR1 Missense_Mutation p.K486E 0.58 tolerated(0.09) probably_damaging(0.998) TCGA-YD-A9TA-06 3 48610320 48610320 C T COL7A1 Missense_Mutation p.G2269E 0.58 probably_damaging(1) TCGA-YD-A9TA-06 3 48620480 48620480 C T COL7A1 Missense_Mutation p.G1495D 0.46 unknown(0) TCGA-YD-A9TA-06 3 48691061 48691061 G A CELSR3 Silent p.L1813L 0.40 TCGA-YD-A9TA-06 3 48694434 48694434 G A CELSR3 Missense_Mutation p.R1366C 0.41 deleterious(0.03) possibly_damaging(0.512) TCGA-YD-A9TA-06 3 48698379 48698379 G A CELSR3 Silent p.V563V 0.37 TCGA-YD-A9TA-06 3 48895122 48895122 G A SLC25A20 3'UTR 0.25 TCGA-YD-A9TA-06 3 49200897 49200897 G A CCDC71 Nonsense_Mutation p.R249* 0.56 TCGA-YD-A9TA-06 3 49699167 49699167 G A BSN Missense_Mutation p.D3297N 0.59 unknown(0) TCGA-YD-A9TA-06 3 49723102 49723102 C T MST1 Silent p.G438G 0.45 TCGA-YD-A9TA-06 3 49896690 49896690 C T CAMKV 3'UTR 0.76 TCGA-YD-A9TA-06 3 49936038 49936038 G A MST1R Silent p.G544G 0.21 TCGA-YD-A9TA-06 3 49946433 49946433 C T MON1A 3'UTR 0.22 TCGA-YD-A9TA-06 3 50314110 50314110 G A LSMEM2 5'Flank 0.33 TCGA-YD-A9TA-06 3 50329921 50329921 G A IFRD2 5'Flank 0.12 TCGA-YD-A9TA-06 3 50332148 50332148 G A HYAL3 Silent p.L296L 0.26 TCGA-YD-A9TA-06 3 50340017 50340017 C T HYAL1 Missense_Mutation p.G124E 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 50340018 50340018 C T HYAL1 Missense_Mutation p.G124R 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-YD-A9TA-06 3 50369198 50369198 G A RASSF1 Silent p.S188S 0.41 TCGA-YD-A9TA-06 3 51263204 51263204 G A DOCK3 Silent p.K459K 0.34 TCGA-YD-A9TA-06 3 51267029 51267029 G A DOCK3 Missense_Mutation p.E636K 0.57 deleterious(0) benign(0.437) TCGA-YD-A9TA-06 3 51378671 51378671 C T DOCK3 Missense_Mutation p.A1257V 0.29 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 3 51458125 51458125 G A VPRBP Missense_Mutation p.R338C 0.38 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 3 51679706 51679706 C T RAD54L2 Missense_Mutation p.S919F 0.35 tolerated(0.07) possibly_damaging(0.541) TCGA-YD-A9TA-06 3 51979174 51979174 C T PARP3 Silent p.F272F 0.49 TCGA-YD-A9TA-06 3 52492809 52492809 C T NISCH Silent p.F103F 0.20 TCGA-YD-A9TA-06 3 52538865 52538865 G A STAB1 Silent p.E450E 0.61 TCGA-YD-A9TA-06 3 52544234 52544234 G A STAB1 Missense_Mutation p.G871R 0.57 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 52696180 52696180 C T PBRM1 Missense_Mutation p.G166E 0.48 tolerated(0.89) probably_damaging(0.969) TCGA-YD-A9TA-06 3 53220020 53220020 C T PRKCD Silent p.L355L 0.32 TCGA-YD-A9TA-06 3 53757477 53757477 C T CACNA1D Silent p.V581V 0.48 TCGA-YD-A9TA-06 3 53815682 53815682 C T CACNA1D Missense_Mutation p.P1614S 0.24 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 54596958 54596958 G A CACNA2D3 Missense_Mutation p.G226R 0.36 deleterious(0) probably_damaging(0.944) TCGA-YD-A9TA-06 3 54615831 54615831 A G CACNA2D3 Missense_Mutation p.Y297C 0.47 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 3 54952716 54952716 C T LRTM1 Missense_Mutation p.E270K 0.17 tolerated(0.1) benign(0.022) TCGA-YD-A9TA-06 3 55504420 55504420 C T WNT5A Silent p.R281R 0.50 TCGA-YD-A9TA-06 3 55504421 55504421 C T WNT5A Missense_Mutation p.R281Q 0.52 tolerated(0.09) probably_damaging(0.938) TCGA-YD-A9TA-06 3 56173633 56173633 G A ERC2 Silent p.T459T 0.45 TCGA-YD-A9TA-06 3 56183068 56183068 G A ERC2 Silent p.D414D 0.15 TCGA-YD-A9TA-06 3 56681164 56681164 G A FAM208A Missense_Mutation p.S534F 0.57 deleterious(0.01) benign(0.005) TCGA-YD-A9TA-06 3 58127637 58127637 C T FLNB Missense_Mutation p.P1752L 0.27 tolerated(0.38) benign(0.004) TCGA-YD-A9TA-06 3 58519218 58519218 C T ACOX2 Silent p.V179V 0.59 TCGA-YD-A9TA-06 3 58817487 58817487 G A C3orf67 Silent p.S449S 0.18 TCGA-YD-A9TA-06 3 58855959 58855959 G A C3orf67 Silent p.S139S 0.54 TCGA-YD-A9TA-06 3 62189084 62189084 C T PTPRG Missense_Mutation p.P539S 0.25 deleterious(0.01) benign(0.354) TCGA-YD-A9TA-06 3 62189085 62189085 C T PTPRG Missense_Mutation p.P539L 0.26 deleterious(0) possibly_damaging(0.826) TCGA-YD-A9TA-06 3 64008166 64008166 G A PSMD6 Missense_Mutation p.S60F 0.23 deleterious(0.01) benign(0.066) TCGA-YD-A9TA-06 3 65342324 65342324 G A MAGI1 Missense_Mutation p.S1373F 0.57 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A9TA-06 3 65346954 65346954 C T MAGI1 Missense_Mutation p.R1185Q 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-YD-A9TA-06 3 65372846 65372846 G A MAGI1 Intron 0.23 TCGA-YD-A9TA-06 3 65607739 65607739 C T MAGI1 Missense_Mutation p.R113Q 0.41 deleterious(0) benign(0.3) TCGA-YD-A9TA-06 3 66431335 66431335 C T SLC25A26 3'Flank 0.56 TCGA-YD-A9TA-06 3 68466432 68466432 G A FAM19A1 Missense_Mutation p.G41R 0.45 tolerated(0.07) probably_damaging(1) TCGA-YD-A9TA-06 3 69053615 69053615 G A EOGT Silent p.F178F 0.36 TCGA-YD-A9TA-06 3 69171529 69171529 C T LMOD3 Silent p.E3E 0.25 TCGA-YD-A9TA-06 3 73433479 73433479 G A PDZRN3 Silent p.L746L 0.48 TCGA-YD-A9TA-06 3 7348285 7348285 G A GRM7 Missense_Mutation p.E327K 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-YD-A9TA-06 3 75679959 75679959 C T MIR1324 RNA 0.09 TCGA-YD-A9TA-06 3 81635310 81635310 G A GBE1 Missense_Mutation p.P423L 0.29 deleterious(0) benign(0.422) TCGA-YD-A9TA-06 3 81635311 81635311 G A GBE1 Missense_Mutation p.P423S 0.28 deleterious(0.04) benign(0.172) TCGA-YD-A9TA-06 3 81810672 81810672 C T GBE1 5'UTR 0.27 TCGA-YD-A9TA-06 3 9094804 9094804 G A SRGAP3 Silent p.S410S 0.48 TCGA-YD-A9TA-06 3 93646230 93646230 G A PROS1 Missense_Mutation p.S33L 0.25 deleterious(0) probably_damaging(0.984) TCGA-YD-A9TA-06 3 97167502 97167502 C T EPHA6 Missense_Mutation p.H608Y 0.57 deleterious(0) possibly_damaging(0.713) TCGA-YD-A9TA-06 3 97888248 97888248 G A OR5H15 Silent p.R235R 0.55 TCGA-YD-A9TA-06 3 98002032 98002032 G A OR5H2 Missense_Mutation p.E101K 0.50 deleterious(0.01) benign(0.336) TCGA-YD-A9TA-06 3 98240192 98240192 G A CLDND1 Missense_Mutation p.S49F 0.27 deleterious(0.03) benign(0.046) TCGA-YD-A9TA-06 3 99569392 99569392 C T FILIP1L Silent p.R376R 0.48 TCGA-YD-A9TA-06 4 100128694 100128694 C T ADH6 Silent p.V291V 0.20 TCGA-YD-A9TA-06 4 100264011 100264011 C T ADH1C Missense_Mutation p.E257K 0.31 probably_damaging(0.999) TCGA-YD-A9TA-06 4 100461568 100461568 G C C4orf17 Splice_Site p.X279_splice 0.25 TCGA-YD-A9TA-06 4 100512464 100512464 G A MTTP Missense_Mutation p.D192N 0.26 tolerated(0.44) benign(0.02) TCGA-YD-A9TA-06 4 100787209 100787209 G A DAPP1 Silent p.R235R 0.32 TCGA-YD-A9TA-06 4 1018195 1018195 G A FGFRL1 Missense_Mutation p.S272N 0.62 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 102816556 102816556 C T BANK1 Missense_Mutation p.S333F 0.33 tolerated(0.69) benign(0.438) TCGA-YD-A9TA-06 4 103827713 103827713 G A SLC9B1 Missense_Mutation p.S392L 0.27 deleterious(0.04) benign(0.013) TCGA-YD-A9TA-06 4 106156271 106156271 C T TET2 Missense_Mutation p.S391F 0.32 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 4 110441555 110441555 C T SEC24B Silent p.F720F 0.26 TCGA-YD-A9TA-06 4 110670683 110670683 C T CFI Missense_Mutation p.R339Q 0.38 deleterious(0) probably_damaging(0.989) TCGA-YD-A9TA-06 4 110682768 110682768 C T CFI Missense_Mutation p.G188E 0.26 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 110834513 110834513 C T EGF Silent p.L8L 0.40 TCGA-YD-A9TA-06 4 110865188 110865188 G A EGF Missense_Mutation p.D234N 0.35 tolerated(0.6) benign(0.029) TCGA-YD-A9TA-06 4 110882110 110882110 G A EGF Missense_Mutation p.G385E 0.33 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 4 110901187 110901187 C T EGF Missense_Mutation p.P705S 0.39 tolerated(0.08) possibly_damaging(0.521) TCGA-YD-A9TA-06 4 111539829 111539829 G A PITX2 Missense_Mutation p.R143C 0.46 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 113353410 113353410 G A ALPK1 Missense_Mutation p.E903K 0.16 tolerated(0.51) benign(0.004) TCGA-YD-A9TA-06 4 11401380 11401380 C T HS3ST1 Missense_Mutation p.E84K 0.14 tolerated(0.79) benign(0.037) TCGA-YD-A9TA-06 4 114275979 114275979 C T ANK2 Missense_Mutation p.R2069C 0.30 probably_damaging(0.944) TCGA-YD-A9TA-06 4 114276594 114276594 C T ANK2 Missense_Mutation p.R2274C 0.24 benign(0.002) TCGA-YD-A9TA-06 4 114276720 114276720 C G ANK2 Missense_Mutation p.P2316A 0.15 benign(0.002) TCGA-YD-A9TA-06 4 114276721 114276721 C T ANK2 Missense_Mutation p.P2316L 0.15 benign(0.108) TCGA-YD-A9TA-06 4 114277738 114277738 C T ANK2 Missense_Mutation p.S2655L 0.30 benign(0.207) TCGA-YD-A9TA-06 4 114824781 114824781 G A ARSJ Missense_Mutation p.P150L 0.28 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 4 115856430 115856430 C T NDST4 Missense_Mutation p.G490R 0.36 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 4 1165676 1165676 G A SPON2 Silent p.L62L 0.14 TCGA-YD-A9TA-06 4 118005528 118005528 G A TRAM1L1 Missense_Mutation p.S341F 0.30 tolerated(0.07) benign(0.003) TCGA-YD-A9TA-06 4 118975605 118975605 C T NDST3 Silent p.F180F 0.34 TCGA-YD-A9TA-06 4 119237429 119237429 C T PRSS12 Silent p.L400L 0.39 TCGA-YD-A9TA-06 4 119256804 119256804 C T PRSS12 Missense_Mutation p.G215E 0.24 tolerated(0.88) benign(0.002) TCGA-YD-A9TA-06 4 120160932 120160932 C T USP53 Silent p.F6F 0.32 TCGA-YD-A9TA-06 4 121958396 121958396 C T NDNF Missense_Mutation p.G244S 0.32 tolerated(0.33) benign(0.156) TCGA-YD-A9TA-06 4 122828624 122828624 G A TRPC3 Missense_Mutation p.P631S 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-YD-A9TA-06 4 122854245 122854245 C T TRPC3 Intron 0.36 TCGA-YD-A9TA-06 4 123128310 123128310 C T KIAA1109 Missense_Mutation p.S515L 0.28 benign(0.164) TCGA-YD-A9TA-06 4 123150333 123150333 C T KIAA1109 Missense_Mutation p.R994C 0.38 possibly_damaging(0.891) TCGA-YD-A9TA-06 4 123160785 123160785 C T KIAA1109 Silent p.T1316T 0.32 TCGA-YD-A9TA-06 4 123542020 123542020 C T IL21 Silent p.L49L 0.26 TCGA-YD-A9TA-06 4 126328170 126328170 C T FAT4 Missense_Mutation p.R1815C 0.38 probably_damaging(1) TCGA-YD-A9TA-06 4 126372726 126372726 G A FAT4 Missense_Mutation p.E3519K 0.34 probably_damaging(0.981) TCGA-YD-A9TA-06 4 126372882 126372882 G A FAT4 Missense_Mutation p.E3571K 0.33 probably_damaging(0.976) TCGA-YD-A9TA-06 4 126373209 126373209 G A FAT4 Missense_Mutation p.D3680N 0.30 possibly_damaging(0.529) TCGA-YD-A9TA-06 4 126373234 126373234 G A FAT4 Missense_Mutation p.G3688E 0.46 probably_damaging(1) TCGA-YD-A9TA-06 4 126411107 126411107 C T FAT4 Missense_Mutation p.P4377L 0.47 probably_damaging(0.999) TCGA-YD-A9TA-06 4 126412458 126412458 G A FAT4 Silent p.R4827R 0.40 TCGA-YD-A9TA-06 4 134073489 134073489 G A PCDH10 Missense_Mutation p.A732T 0.30 tolerated(0.12) benign(0.233) TCGA-YD-A9TA-06 4 134073497 134073497 C T PCDH10 Silent p.I734I 0.30 TCGA-YD-A9TA-06 4 138450913 138450913 G A PCDH18 Missense_Mutation p.S777L 0.44 deleterious(0.02) benign(0.048) TCGA-YD-A9TA-06 4 138451849 138451849 A G PCDH18 Missense_Mutation p.F465S 0.36 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 4 138452161 138452161 G A PCDH18 Missense_Mutation p.P361L 0.27 tolerated(0.08) benign(0.211) TCGA-YD-A9TA-06 4 144918707 144918707 G A GYPB Missense_Mutation p.R86C 0.39 tolerated(0.17) unknown(0) TCGA-YD-A9TA-06 4 146823458 146823458 G A ZNF827 Missense_Mutation p.P318L 0.28 tolerated_low_confidence(0.25) benign(0.024) TCGA-YD-A9TA-06 4 146823459 146823459 G A ZNF827 Missense_Mutation p.P318S 0.25 tolerated_low_confidence(0.2) benign(0.002) TCGA-YD-A9TA-06 4 148407233 148407233 C G EDNRA Missense_Mutation p.L134V 0.40 tolerated(0.16) benign(0.077) TCGA-YD-A9TA-06 4 148984388 148984388 C T ARHGAP10 Missense_Mutation p.S706L 0.40 tolerated(0.13) benign(0.261) TCGA-YD-A9TA-06 4 149115959 149115959 C T NR3C2 Missense_Mutation p.R651Q 0.33 deleterious(0) possibly_damaging(0.553) TCGA-YD-A9TA-06 4 151505049 151505049 G A MAB21L2 Missense_Mutation p.D290N 0.33 deleterious(0) possibly_damaging(0.497) TCGA-YD-A9TA-06 4 155719172 155719172 C T RBM46 Missense_Mutation p.L121F 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-YD-A9TA-06 4 156631756 156631756 G A GUCY1A3 Missense_Mutation p.E147K 0.51 deleterious(0.04) probably_damaging(0.943) TCGA-YD-A9TA-06 4 156632084 156632084 C T GUCY1A3 Missense_Mutation p.S256F 0.61 tolerated(0.11) possibly_damaging(0.753) TCGA-YD-A9TA-06 4 15713435 15713435 G A BST1 Missense_Mutation p.D153N 0.07 tolerated(0.58) possibly_damaging(0.783) TCGA-YD-A9TA-06 4 15937533 15937533 C T FGFBP1 3'UTR 0.22 TCGA-YD-A9TA-06 4 159514611 159514611 G A RXFP1 Missense_Mutation p.M82I 0.47 tolerated(0.31) benign(0.001) TCGA-YD-A9TA-06 4 15964673 15964673 C T FGFBP2 Missense_Mutation p.G27E 0.21 tolerated(0.2) possibly_damaging(0.61) TCGA-YD-A9TA-06 4 16504295 16504295 C T LDB2 Missense_Mutation p.E365K 0.59 deleterious_low_confidence(0.05) benign(0.194) TCGA-YD-A9TA-06 4 165962353 165962353 G A TRIM60 Missense_Mutation p.D377N 0.62 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 4 166960582 166960582 C T TLL1 Missense_Mutation p.S417L 0.53 deleterious(0.02) benign(0.202) TCGA-YD-A9TA-06 4 167675656 167675656 T G SPOCK3 Intron 0.54 TCGA-YD-A9TA-06 4 169204713 169204713 G A DDX60 Missense_Mutation p.H536Y 0.41 tolerated(0.33) benign(0.003) TCGA-YD-A9TA-06 4 170057488 170057488 G A SH3RF1 Missense_Mutation p.S350F 0.56 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 4 173873271 173873271 C T GALNTL6 Silent p.S411S 0.23 TCGA-YD-A9TA-06 4 175231189 175231189 A G CEP44 Silent p.E289E 0.45 TCGA-YD-A9TA-06 4 175897656 175897656 C T ADAM29 Missense_Mutation p.S327L 0.27 deleterious(0) benign(0.285) TCGA-YD-A9TA-06 4 175899108 175899108 C T ADAM29 Missense_Mutation p.S811F 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-YD-A9TA-06 4 177650846 177650846 C T VEGFC Missense_Mutation p.E68K 0.56 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 4 1807523 1807523 G A FGFR3 Silent p.R566R 0.19 TCGA-YD-A9TA-06 4 183721120 183721120 G A TENM3 Silent p.E2572E 0.67 TCGA-YD-A9TA-06 4 187003859 187003859 T A TLR3 Missense_Mutation p.L340H 0.60 tolerated(0.53) possibly_damaging(0.591) TCGA-YD-A9TA-06 4 188924973 188924973 G A ZFP42 3'UTR 0.75 TCGA-YD-A9TA-06 4 22444332 22444332 A C GPR125 Missense_Mutation p.D287E 0.65 deleterious(0.03) possibly_damaging(0.771) TCGA-YD-A9TA-06 4 2273139 2273139 G A ZFYVE28 Missense_Mutation p.P811S 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-YD-A9TA-06 4 2273140 2273140 G A ZFYVE28 Silent p.D810D 0.16 TCGA-YD-A9TA-06 4 22749227 22749227 A G GBA3 Missense_Mutation p.K199E 0.21 deleterious(0) possibly_damaging(0.636) TCGA-YD-A9TA-06 4 23815415 23815415 C T PPARGC1A Missense_Mutation p.R564K 0.24 tolerated(0.21) unknown(0) TCGA-YD-A9TA-06 4 2632884 2632884 C T FAM193A Silent p.F51F 0.11 TCGA-YD-A9TA-06 4 26487449 26487449 G A CCKAR Missense_Mutation p.P146S 0.16 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 26490919 26490919 G A CCKAR Silent p.I100I 0.69 TCGA-YD-A9TA-06 4 265845 265845 C T ZNF732 Silent p.K267K 0.72 TCGA-YD-A9TA-06 4 27010395 27010395 C T STIM2 Silent p.L428L 0.15 TCGA-YD-A9TA-06 4 2701627 2701627 C T FAM193A Missense_Mutation p.T952I 0.62 tolerated(0.09) benign(0.003) TCGA-YD-A9TA-06 4 2826382 2826382 C T SH3BP2 Silent p.F151F 0.54 TCGA-YD-A9TA-06 4 2906642 2906642 A G ADD1 Missense_Mutation p.Q438R 0.41 deleterious(0) probably_damaging(0.958) TCGA-YD-A9TA-06 4 3219646 3219646 C T HTT Silent p.P2403P 0.76 TCGA-YD-A9TA-06 4 36214909 36214909 G A ARAP2 Missense_Mutation p.P333S 0.17 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 38775054 38775054 C T TLR10 Missense_Mutation p.E720K 0.54 tolerated(0.1) benign(0.033) TCGA-YD-A9TA-06 4 38775613 38775613 G A TLR10 Silent p.F533F 0.14 TCGA-YD-A9TA-06 4 38995445 38995445 C T TMEM156 Missense_Mutation p.E178K 0.58 deleterious(0.05) benign(0.026) TCGA-YD-A9TA-06 4 39000298 39000298 C T TMEM156 Missense_Mutation p.G107E 0.13 tolerated(0.26) possibly_damaging(0.586) TCGA-YD-A9TA-06 4 39000422 39000422 C T TMEM156 Missense_Mutation p.E66K 0.11 tolerated(0.11) possibly_damaging(0.901) TCGA-YD-A9TA-06 4 39247021 39247021 C T WDR19 Missense_Mutation p.S893F 0.42 deleterious(0) possibly_damaging(0.575) TCGA-YD-A9TA-06 4 39409349 39409349 G A KLB Silent p.K260K 0.12 TCGA-YD-A9TA-06 4 39482128 39482128 C T LIAS 3'Flank 0.12 TCGA-YD-A9TA-06 4 40045486 40045486 G A RP11-333E13.4 RNA 0.27 TCGA-YD-A9TA-06 4 40104424 40104424 C G N4BP2 Missense_Mutation p.P320R 0.54 deleterious(0) possibly_damaging(0.729) TCGA-YD-A9TA-06 4 40122163 40122163 C T N4BP2 Missense_Mutation p.S811L 0.52 tolerated(0.09) benign(0.015) TCGA-YD-A9TA-06 4 40245054 40245054 G A RHOH Silent p.G16G 0.42 TCGA-YD-A9TA-06 4 40440111 40440111 C T RBM47 Missense_Mutation p.G267D 0.34 tolerated(0.12) benign(0.051) TCGA-YD-A9TA-06 4 40440544 40440544 C T RBM47 Missense_Mutation p.E123K 0.26 tolerated(0.1) benign(0.054) TCGA-YD-A9TA-06 4 40776965 40776965 C T NSUN7 Nonsense_Mutation p.Q275* 0.18 TCGA-YD-A9TA-06 4 40818219 40818219 G A APBB2 Missense_Mutation p.P724S 0.26 tolerated(0.9) benign(0.016) TCGA-YD-A9TA-06 4 40825731 40825731 G A APBB2 Missense_Mutation p.S621F 0.16 deleterious(0) probably_damaging(0.985) TCGA-YD-A9TA-06 4 41621226 41621226 C T LIMCH1 Missense_Mutation p.S235F 0.28 deleterious(0) possibly_damaging(0.602) TCGA-YD-A9TA-06 4 41984205 41984205 G A DCAF4L1 Nonsense_Mutation p.W132* 0.41 TCGA-YD-A9TA-06 4 42122189 42122189 G A BEND4 Silent p.F423F 0.49 TCGA-YD-A9TA-06 4 42487571 42487571 C T ATP8A1 Missense_Mutation p.G756R 0.62 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TA-06 4 42554545 42554545 A T ATP8A1 Missense_Mutation p.I499N 0.23 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 4 4317677 4317677 C T ZBTB49 Missense_Mutation p.P534L 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 4 46043246 46043246 G A GABRG1 Missense_Mutation p.S386F 0.19 tolerated(0.09) possibly_damaging(0.877) TCGA-YD-A9TA-06 4 46060610 46060610 T G GABRG1 Missense_Mutation p.K219Q 0.58 tolerated(0.16) benign(0.017) TCGA-YD-A9TA-06 4 46967155 46967155 G A GABRA4 Silent p.F322F 0.17 TCGA-YD-A9TA-06 4 47322178 47322178 C T GABRB1 Nonsense_Mutation p.R166* 0.38 TCGA-YD-A9TA-06 4 47538539 47538539 G A ATP10D Silent p.L367L 0.30 TCGA-YD-A9TA-06 4 47597824 47597824 G A CORIN Silent p.L1015L 0.42 TCGA-YD-A9TA-06 4 47953442 47953442 G A CNGA1 Missense_Mutation p.S124L 0.34 tolerated_low_confidence(0.07) benign(0.104) TCGA-YD-A9TA-06 4 48036946 48036946 G A NIPAL1 Silent p.G170G 0.28 TCGA-YD-A9TA-06 4 48097181 48097181 G A TXK Missense_Mutation p.S187F 0.41 deleterious(0) probably_damaging(0.961) TCGA-YD-A9TA-06 4 48169917 48169917 G A TEC Silent p.I183I 0.33 TCGA-YD-A9TA-06 4 48178163 48178177 TTGATTTTTGAAACA - TEC In_Frame_Del p.D55_K60delinsE 0.30 TCGA-YD-A9TA-06 4 48422151 48422151 C T SLAIN2 Missense_Mutation p.P457L 0.46 deleterious(0) possibly_damaging(0.787) TCGA-YD-A9TA-06 4 48887407 48887407 C T OCIAD2 3'UTR 0.39 TCGA-YD-A9TA-06 4 48887497 48887497 G A OCIAD2 3'UTR 0.32 TCGA-YD-A9TA-06 4 52860897 52860897 C T LRRC66 Missense_Mutation p.G764E 0.25 tolerated(0.44) benign(0.036) TCGA-YD-A9TA-06 4 52861305 52861305 G A LRRC66 Missense_Mutation p.S628L 0.30 tolerated(0.42) benign(0.013) TCGA-YD-A9TA-06 4 52862026 52862026 G A LRRC66 Missense_Mutation p.L388F 0.28 tolerated(1) benign(0.009) TCGA-YD-A9TA-06 4 52862027 52862027 G A LRRC66 Silent p.F387F 0.32 TCGA-YD-A9TA-06 4 54967870 54967870 G A GSX2 Silent p.R232R 0.37 TCGA-YD-A9TA-06 4 55151537 55151537 G A PDGFRA Splice_Site p.X775_splice 0.40 TCGA-YD-A9TA-06 4 55976673 55976673 C T KDR Silent p.T384T 0.28 TCGA-YD-A9TA-06 4 56744152 56744152 C T EXOC1 Missense_Mutation p.H382Y 0.33 tolerated(0.08) possibly_damaging(0.734) TCGA-YD-A9TA-06 4 56820394 56820394 C T CEP135 Missense_Mutation p.S106L 0.35 tolerated(0.23) benign(0.108) TCGA-YD-A9TA-06 4 57832902 57832902 C T NOA1 Missense_Mutation p.G550R 0.29 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 4 57832903 57832903 C T NOA1 Splice_Site p.X550_splice 0.30 TCGA-YD-A9TA-06 4 5981915 5981915 C T C4orf50 Missense_Mutation p.E526K 0.17 tolerated(0.49) benign(0.099) TCGA-YD-A9TA-06 4 59982 59982 C T ZNF595 Silent p.T54T 0.07 TCGA-YD-A9TA-06 4 6050642 6050642 C T JAKMIP1 Missense_Mutation p.R657K 0.15 tolerated(0.23) probably_damaging(0.994) TCGA-YD-A9TA-06 4 62598973 62598973 G A LPHN3 Missense_Mutation p.G299E 0.46 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 4 62845344 62845344 C T LPHN3 Missense_Mutation p.L889F 0.34 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 6303691 6303691 C T WFS1 Silent p.L723L 0.72 TCGA-YD-A9TA-06 4 6865762 6865762 C T KIAA0232 Missense_Mutation p.S1218F 0.17 deleterious_low_confidence(0.01) benign(0.391) TCGA-YD-A9TA-06 4 69107467 69107467 G A TMPRSS11B Missense_Mutation p.L22F 0.37 tolerated(0.28) benign(0.061) TCGA-YD-A9TA-06 4 69362569 69362569 G A TMPRSS11E 3'UTR 0.23 TCGA-YD-A9TA-06 4 69512744 69512744 C T UGT2B15 3'UTR 0.26 TCGA-YD-A9TA-06 4 69528789 69528789 G A UGT2B15 Silent p.I314I 0.42 TCGA-YD-A9TA-06 4 69536211 69536211 G A UGT2B15 Silent p.I42I 0.35 TCGA-YD-A9TA-06 4 69682431 69682431 G A UGT2B10 Missense_Mutation p.D232N 0.39 tolerated(0.34) benign(0.06) TCGA-YD-A9TA-06 4 69817061 69817061 C T UGT2A3 Missense_Mutation p.E140K 0.31 tolerated(0.24) benign(0.019) TCGA-YD-A9TA-06 4 70066275 70066275 C T UGT2B11 Silent p.L491L 0.31 TCGA-YD-A9TA-06 4 70455305 70455305 G A UGT2A1 Nonsense_Mutation p.R623* 0.27 TCGA-YD-A9TA-06 4 70460202 70460202 C T UGT2A1 Missense_Mutation p.E599K 0.36 deleterious(0) benign(0.155) TCGA-YD-A9TA-06 4 70896484 70896484 C T HTN3 Silent p.I9I 0.26 TCGA-YD-A9TA-06 4 71114766 71114766 C T CSN3 Missense_Mutation p.P47S 0.38 deleterious(0.02) possibly_damaging(0.876) TCGA-YD-A9TA-06 4 71347075 71347075 C T MUC7 Missense_Mutation p.S205F 0.30 tolerated(0.06) unknown(0) TCGA-YD-A9TA-06 4 71465307 71465307 C T AMBN Missense_Mutation p.L80F 0.26 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 71465346 71465346 G A AMBN Missense_Mutation p.E93K 0.34 deleterious(0.05) probably_damaging(0.932) TCGA-YD-A9TA-06 4 71507837 71507837 C T ENAM Missense_Mutation p.P232S 0.41 deleterious(0.04) probably_damaging(0.955) TCGA-YD-A9TA-06 4 71510044 71510044 G T ENAM Missense_Mutation p.K967N 0.37 tolerated(0.53) benign(0.185) TCGA-YD-A9TA-06 4 72994521 72994521 G A NPFFR2 Missense_Mutation p.M173I 0.35 tolerated(0.19) benign(0.01) TCGA-YD-A9TA-06 4 73956820 73956820 G A ANKRD17 Silent p.T2175T 0.28 TCGA-YD-A9TA-06 4 7435394 7435394 C T PSAPL1 Missense_Mutation p.V405M 0.63 tolerated(0.13) benign(0.033) TCGA-YD-A9TA-06 4 7435395 7435395 C T PSAPL1 Silent p.T404T 0.63 TCGA-YD-A9TA-06 4 75673313 75673313 C T BTC Missense_Mutation p.E159K 0.24 tolerated(0.06) benign(0.034) TCGA-YD-A9TA-06 4 76924823 76924823 C T CXCL9 Silent p.G102G 0.41 TCGA-YD-A9TA-06 4 7714482 7714482 C T SORCS2 Missense_Mutation p.R631C 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 7725509 7725509 C T SORCS2 Missense_Mutation p.P837L 0.56 deleterious(0.03) possibly_damaging(0.538) TCGA-YD-A9TA-06 4 77288758 77288758 C T CCDC158 Missense_Mutation p.E507K 0.24 deleterious(0) benign(0.066) TCGA-YD-A9TA-06 4 77817197 77817197 C T SOWAHB Silent p.V602V 0.27 TCGA-YD-A9TA-06 4 77817541 77817541 G A SOWAHB Missense_Mutation p.P488S 0.33 deleterious(0.02) possibly_damaging(0.641) TCGA-YD-A9TA-06 4 79369344 79369344 G A FRAS1 Missense_Mutation p.D2050N 0.19 probably_damaging(0.993) TCGA-YD-A9TA-06 4 79371394 79371394 C T FRAS1 Missense_Mutation p.P2122S 0.36 possibly_damaging(0.723) TCGA-YD-A9TA-06 4 79410061 79410061 C T FRAS1 Silent p.L2929L 0.39 TCGA-YD-A9TA-06 4 79793861 79793861 C T BMP2K Missense_Mutation p.P568S 0.37 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TA-06 4 80246929 80246929 C T NAA11 Missense_Mutation p.G35S 0.24 tolerated(0.08) benign(0.23) TCGA-YD-A9TA-06 4 83417305 83417305 C T TMEM150C Silent p.K93K 0.38 TCGA-YD-A9TA-06 4 84234436 84234436 G A HPSE Silent p.S168S 0.37 TCGA-YD-A9TA-06 4 8465742 8465742 C T TRMT44 Missense_Mutation p.L412F 0.21 deleterious(0) benign(0.407) TCGA-YD-A9TA-06 4 8467110 8467110 C T TRMT44 Missense_Mutation p.S439F 0.11 deleterious(0) probably_damaging(0.95) TCGA-YD-A9TA-06 4 85538773 85538773 C T CDS1 Silent p.V133V 0.19 TCGA-YD-A9TA-06 4 8589014 8589014 G A GPR78 Missense_Mutation p.R339K 0.68 tolerated_low_confidence(0.65) benign(0.235) TCGA-YD-A9TA-06 4 8621165 8621165 G A CPZ Missense_Mutation p.G594R 0.67 tolerated(0.13) benign(0.006) TCGA-YD-A9TA-06 4 87696657 87696657 C T PTPN13 Missense_Mutation p.P1920S 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 4 88534125 88534125 G A DSPP Missense_Mutation p.E263K 0.12 probably_damaging(0.943) TCGA-YD-A9TA-06 4 88534284 88534284 G A DSPP Missense_Mutation p.E316K 0.39 benign(0.001) TCGA-YD-A9TA-06 4 88903715 88903715 C T SPP1 Silent p.A204A 0.40 TCGA-YD-A9TA-06 4 89772171 89772171 C T FAM13A Missense_Mutation p.S336N 0.28 deleterious(0.03) possibly_damaging(0.545) TCGA-YD-A9TA-06 4 94137898 94137898 G A GRID2 Missense_Mutation p.D267N 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-YD-A9TA-06 4 94137945 94137945 G A GRID2 Silent p.T282T 0.37 TCGA-YD-A9TA-06 4 95506120 95506120 C T PDLIM5 Intron 0.35 TCGA-YD-A9TA-06 5 101593000 101593000 G A SLCO4C1 Missense_Mutation p.P430S 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 5 101834439 101834439 C T SLCO6A1 Missense_Mutation p.G37E 0.47 tolerated(1) benign(0) TCGA-YD-A9TA-06 5 102285306 102285306 C T PAM Missense_Mutation p.H237Y 0.42 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 5 10402167 10402167 C T MARCH6 Intron 0.30 TCGA-YD-A9TA-06 5 10973627 10973627 G A CTNND2 Missense_Mutation p.P1206S 0.49 tolerated(0.15) possibly_damaging(0.714) TCGA-YD-A9TA-06 5 110730452 110730452 C T CAMK4 Missense_Mutation p.A144V 0.16 tolerated(1) possibly_damaging(0.585) TCGA-YD-A9TA-06 5 110730453 110730453 C T CAMK4 Silent p.A144A 0.15 TCGA-YD-A9TA-06 5 11117601 11117601 C T CTNND2 Silent p.V746V 0.42 TCGA-YD-A9TA-06 5 112770369 112770369 G A TSSK1B Silent p.F56F 0.39 TCGA-YD-A9TA-06 5 11364878 11364878 C T CTNND2 Missense_Mutation p.M434I 0.34 tolerated(0.08) benign(0.003) TCGA-YD-A9TA-06 5 114916353 114916353 C T TMED7-TICAM2 Missense_Mutation p.G370R 0.31 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-YD-A9TA-06 5 115348102 115348102 G C AQPEP Missense_Mutation p.W760S 0.24 deleterious(0) possibly_damaging(0.859) TCGA-YD-A9TA-06 5 118506610 118506610 C T DMXL1 Missense_Mutation p.R2042C 0.23 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 118970224 118970224 C T FAM170A Missense_Mutation p.H261Y 0.32 deleterious(0) possibly_damaging(0.629) TCGA-YD-A9TA-06 5 120022222 120022222 C T PRR16 Missense_Mutation p.P222S 0.50 tolerated_low_confidence(0.12) benign(0.065) TCGA-YD-A9TA-06 5 1214073 1214073 G A SLC6A19 Silent p.T260T 0.31 TCGA-YD-A9TA-06 5 121758796 121758796 C T SNCAIP Missense_Mutation p.P122S 0.38 tolerated(0.28) benign(0.004) TCGA-YD-A9TA-06 5 121759368 121759368 G A SNCAIP Silent p.R312R 0.50 TCGA-YD-A9TA-06 5 121761083 121761083 G A SNCAIP Missense_Mutation p.D347N 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-YD-A9TA-06 5 121787238 121787238 G A SNCAIP Missense_Mutation p.R899K 0.15 tolerated(0.21) benign(0.003) TCGA-YD-A9TA-06 5 1244405 1244405 C T SLC6A18 Silent p.F471F 0.32 TCGA-YD-A9TA-06 5 126869453 126869453 C T PRRC1 Missense_Mutation p.P299L 0.41 tolerated(0.06) probably_damaging(0.942) TCGA-YD-A9TA-06 5 128326140 128326140 C T SLC27A6 Missense_Mutation p.L318F 0.62 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 5 1294373 1294373 C G TERT Missense_Mutation p.A210P 0.21 deleterious(0.04) benign(0.003) TCGA-YD-A9TA-06 5 131398224 131398224 C T IL3 Silent p.L100L 0.45 TCGA-YD-A9TA-06 5 132270606 132270606 G A AFF4 Missense_Mutation p.R51C 0.34 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 5 135287077 135287077 G A LECT2 Intron 0.67 TCGA-YD-A9TA-06 5 135496554 135496554 C T SMAD5 Missense_Mutation p.P138L 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 135692416 135692416 G A TRPC7 Silent p.N220N 0.53 TCGA-YD-A9TA-06 5 136315147 136315147 G A SPOCK1 Missense_Mutation p.P335S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A9TA-06 5 13716619 13716619 C T DNAH5 Missense_Mutation p.D4296N 0.45 possibly_damaging(0.822) TCGA-YD-A9TA-06 5 137235325 137235325 C T PKD2L2 Silent p.F215F 0.35 TCGA-YD-A9TA-06 5 13752267 13752267 G A DNAH5 Silent p.F3668F 0.46 TCGA-YD-A9TA-06 5 137626358 137626358 G C CDC25C Missense_Mutation p.N278K 0.31 tolerated(0.09) benign(0.231) TCGA-YD-A9TA-06 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.43 TCGA-YD-A9TA-06 5 137803568 137803568 C T EGR1 Missense_Mutation p.P477L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TA-06 5 137843997 137843997 G C ETF1 Nonsense_Mutation p.Y437* 0.18 TCGA-YD-A9TA-06 5 13792223 13792223 C T DNAH5 Missense_Mutation p.M2776I 0.49 benign(0.072) TCGA-YD-A9TA-06 5 13829789 13829789 C T DNAH5 Missense_Mutation p.E2092K 0.38 possibly_damaging(0.621) TCGA-YD-A9TA-06 5 13867922 13867922 G A DNAH5 Silent p.F1338F 0.39 TCGA-YD-A9TA-06 5 13870926 13870926 C T DNAH5 Missense_Mutation p.E1262K 0.45 benign(0.002) TCGA-YD-A9TA-06 5 138718984 138718984 G A SLC23A1 5'Flank 0.43 TCGA-YD-A9TA-06 5 138837182 138837182 G A ECSCR Silent p.I55I 0.31 TCGA-YD-A9TA-06 5 138994168 138994168 C T UBE2D2 Intron 0.30 TCGA-YD-A9TA-06 5 13911601 13911601 C G DNAH5 Missense_Mutation p.G513A 0.26 possibly_damaging(0.549) TCGA-YD-A9TA-06 5 1394820 1394820 G A SLC6A3 3'UTR 0.39 TCGA-YD-A9TA-06 5 139741442 139741442 G A SLC4A9 Silent p.R209R 0.30 TCGA-YD-A9TA-06 5 140175741 140175741 G A PCDHA2 Missense_Mutation p.V398M 0.26 deleterious_low_confidence(0.03) benign(0.188) TCGA-YD-A9TA-06 5 140175996 140175996 G A PCDHA2 Missense_Mutation p.D483N 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A9TA-06 5 140201573 140201573 G A PCDHA5 Silent p.G71G 0.30 TCGA-YD-A9TA-06 5 140202701 140202701 G A PCDHA5 Silent p.V447V 0.31 TCGA-YD-A9TA-06 5 140203242 140203242 G A PCDHA5 Missense_Mutation p.G628S 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YD-A9TA-06 5 140215406 140215406 G A PCDHA7 Missense_Mutation p.G480R 0.30 tolerated_low_confidence(1) benign(0) TCGA-YD-A9TA-06 5 140221796 140221796 G A PCDHA8 Missense_Mutation p.R297Q 0.25 tolerated_low_confidence(0.11) benign(0) TCGA-YD-A9TA-06 5 140222859 140222859 G A PCDHA8 Silent p.V651V 0.37 TCGA-YD-A9TA-06 5 140306424 140306424 C T PCDHAC1 5'Flank 0.19 TCGA-YD-A9TA-06 5 140308880 140308880 G A PCDHAC1 Silent p.R801R 0.31 TCGA-YD-A9TA-06 5 140480405 140480405 G A PCDHB3 Missense_Mutation p.E58K 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.48) TCGA-YD-A9TA-06 5 140502270 140502270 G A PCDHB4 Silent p.L230L 0.39 TCGA-YD-A9TA-06 5 140503257 140503257 C T PCDHB4 Silent p.F559F 0.23 TCGA-YD-A9TA-06 5 140515473 140515473 C T PCDHB5 Missense_Mutation p.P153S 0.31 tolerated_low_confidence(0.14) benign(0.091) TCGA-YD-A9TA-06 5 140516148 140516148 G A PCDHB5 Missense_Mutation p.G378S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-YD-A9TA-06 5 140516149 140516149 G A PCDHB5 Missense_Mutation p.G378D 0.31 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-YD-A9TA-06 5 140530763 140530763 G A PCDHB6 Missense_Mutation p.E309K 0.29 tolerated(0.71) benign(0.003) TCGA-YD-A9TA-06 5 140554339 140554339 G C PCDHB7 Silent p.V641V 0.08 TCGA-YD-A9TA-06 5 140554508 140554508 C T PCDHB7 Missense_Mutation p.L698F 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.771) TCGA-YD-A9TA-06 5 140557582 140557582 C T PCDHB8 5'UTR 0.08 TCGA-YD-A9TA-06 5 140557583 140557583 C T PCDHB8 5'UTR 0.08 TCGA-YD-A9TA-06 5 140558018 140558018 C T PCDHB8 Silent p.L135L 0.10 TCGA-YD-A9TA-06 5 140558441 140558441 G A PCDHB8 Missense_Mutation p.G276R 0.09 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-YD-A9TA-06 5 140558496 140558496 A G PCDHB8 Missense_Mutation p.K294R 0.07 tolerated_low_confidence(0.13) benign(0.002) TCGA-YD-A9TA-06 5 140558559 140558559 C T PCDHB8 Missense_Mutation p.S315F 0.06 tolerated_low_confidence(0.09) benign(0.018) TCGA-YD-A9TA-06 5 140572882 140572882 G A PCDHB10 Missense_Mutation p.E253K 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A9TA-06 5 140573689 140573689 G A PCDHB10 Missense_Mutation p.E522K 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A9TA-06 5 140579640 140579640 C T PCDHB11 Missense_Mutation p.S98F 0.33 tolerated_low_confidence(0.1) benign(0.016) TCGA-YD-A9TA-06 5 140590093 140590093 C T PCDHB12 Silent p.S538S 0.24 TCGA-YD-A9TA-06 5 140595415 140595415 G A PCDHB13 Missense_Mutation p.E574K 0.47 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-YD-A9TA-06 5 140710846 140710846 C G PCDHGA1 Missense_Mutation p.P199A 0.35 tolerated_low_confidence(1) benign(0.013) TCGA-YD-A9TA-06 5 140736201 140736201 C T PCDHGA4 Silent p.D478D 0.37 TCGA-YD-A9TA-06 5 140736650 140736650 C T PCDHGA4 Missense_Mutation p.T628I 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-YD-A9TA-06 5 140741744 140741744 C T PCDHGB2 Missense_Mutation p.P681L 0.31 tolerated(0.06) benign(0.019) TCGA-YD-A9TA-06 5 140768312 140768312 C T PCDHGB4 Silent p.I287I 0.30 TCGA-YD-A9TA-06 5 140794402 140794402 C T PCDHGA10 Silent p.L554L 0.39 TCGA-YD-A9TA-06 5 140866731 140866731 C T PCDHGC4 Missense_Mutation p.S664F 0.38 tolerated(0.08) benign(0.348) TCGA-YD-A9TA-06 5 140870699 140870699 C T PCDHGC5 Missense_Mutation p.A631V 0.43 tolerated(0.86) benign(0.007) TCGA-YD-A9TA-06 5 141233787 141233787 C G PCDH1 Silent p.R1178R 0.44 TCGA-YD-A9TA-06 5 141233788 141233788 C T PCDH1 Missense_Mutation p.R1178Q 0.50 tolerated(0.09) benign(0.32) TCGA-YD-A9TA-06 5 141244509 141244509 G A PCDH1 Missense_Mutation p.P463S 0.33 tolerated(0.4) benign(0.09) TCGA-YD-A9TA-06 5 141325247 141325247 C T PCDH12 Missense_Mutation p.R1085K 0.35 tolerated(0.3) benign(0.009) TCGA-YD-A9TA-06 5 141337113 141337113 C T PCDH12 Missense_Mutation p.D102N 0.35 tolerated(0.07) probably_damaging(0.957) TCGA-YD-A9TA-06 5 141359741 141359741 C T RNF14 Silent p.L296L 0.36 TCGA-YD-A9TA-06 5 143586796 143586796 C T KCTD16 Silent p.S173S 0.28 TCGA-YD-A9TA-06 5 143586868 143586868 G A KCTD16 Silent p.R197R 0.37 TCGA-YD-A9TA-06 5 14477040 14477040 C T TRIO Missense_Mutation p.P2041S 0.49 benign(0.034) TCGA-YD-A9TA-06 5 14492804 14492804 C T TRIO Silent p.N2587N 0.32 TCGA-YD-A9TA-06 5 145028 145028 G A PLEKHG4B Missense_Mutation p.G277E 0.44 tolerated(1) benign(0.032) TCGA-YD-A9TA-06 5 145379652 145379652 G A SH3RF2 Missense_Mutation p.R137K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 5 145379808 145379808 C T SH3RF2 Missense_Mutation p.P189L 0.19 tolerated(0.06) benign(0.033) TCGA-YD-A9TA-06 5 145428656 145428656 C T SH3RF2 Silent p.S390S 0.25 TCGA-YD-A9TA-06 5 145439634 145439634 G A SH3RF2 Silent p.R587R 0.22 TCGA-YD-A9TA-06 5 14607551 14607551 A C FAM105A Missense_Mutation p.E204A 0.34 tolerated(0.18) possibly_damaging(0.734) TCGA-YD-A9TA-06 5 147503395 147503395 G A SPINK5 Splice_Site p.X847_splice 0.52 TCGA-YD-A9TA-06 5 147784266 147784266 T G FBXO38 Missense_Mutation p.I204S 0.48 deleterious(0) benign(0.085) TCGA-YD-A9TA-06 5 148408056 148408056 G A SH3TC2 Silent p.A413A 0.32 TCGA-YD-A9TA-06 5 148758776 148758776 G A IL17B Missense_Mutation p.H5Y 0.37 tolerated_low_confidence(0.08) benign(0) TCGA-YD-A9TA-06 5 148989210 148989210 A T ARHGEF37 Missense_Mutation p.K137M 0.33 deleterious(0) possibly_damaging(0.619) TCGA-YD-A9TA-06 5 149001520 149001520 C T ARHGEF37 Silent p.N410N 0.31 TCGA-YD-A9TA-06 5 149918831 149918831 C T NDST1 Silent p.I493I 0.29 TCGA-YD-A9TA-06 5 150027812 150027812 C T SYNPO Missense_Mutation p.P236L 0.29 deleterious(0.03) possibly_damaging(0.564) TCGA-YD-A9TA-06 5 150027813 150027813 C T SYNPO Silent p.P236P 0.29 TCGA-YD-A9TA-06 5 150029930 150029930 C T SYNPO 3'UTR 0.36 TCGA-YD-A9TA-06 5 150701510 150701510 A C SLC36A2 Intron 0.50 TCGA-YD-A9TA-06 5 150844646 150844646 C T SLC36A1 Missense_Mutation p.S112F 0.30 deleterious(0) possibly_damaging(0.489) TCGA-YD-A9TA-06 5 150905376 150905376 C G FAT2 Missense_Mutation p.E3487Q 0.52 benign(0.102) TCGA-YD-A9TA-06 5 150923053 150923053 C T FAT2 Silent p.R2545R 0.33 TCGA-YD-A9TA-06 5 150945388 150945388 G A FAT2 Silent p.F1035F 0.40 TCGA-YD-A9TA-06 5 151771755 151771755 G A NMUR2 Silent p.T415T 0.38 TCGA-YD-A9TA-06 5 151784009 151784009 G T NMUR2 Missense_Mutation p.F222L 0.40 tolerated(1) benign(0.058) TCGA-YD-A9TA-06 5 153144045 153144045 C T GRIA1 Silent p.I635I 0.42 TCGA-YD-A9TA-06 5 153414460 153414460 G A FAM114A2 Silent p.I18I 0.27 TCGA-YD-A9TA-06 5 154287336 154287336 G A GEMIN5 Missense_Mutation p.P737L 0.28 tolerated(0.1) benign(0.02) TCGA-YD-A9TA-06 5 154393315 154393315 G A KIF4B 5'UTR 0.31 TCGA-YD-A9TA-06 5 156671271 156671271 G A ITK Splice_Site p.X411_splice 0.37 TCGA-YD-A9TA-06 5 156816413 156816413 G A CYFIP2 Missense_Mutation p.G1116R 0.32 tolerated(0.31) benign(0.104) TCGA-YD-A9TA-06 5 156899440 156899440 C T NIPAL4 Silent p.I291I 0.35 TCGA-YD-A9TA-06 5 156899755 156899755 C T NIPAL4 Silent p.T396T 0.29 TCGA-YD-A9TA-06 5 15928002 15928002 C T FBXL7 Missense_Mutation p.S44F 0.28 tolerated(0.23) benign(0.231) TCGA-YD-A9TA-06 5 15937298 15937298 G A FBXL7 3'UTR 0.42 TCGA-YD-A9TA-06 5 159665640 159665640 G A FABP6 Missense_Mutation p.E170K 0.31 tolerated(1) benign(0.062) TCGA-YD-A9TA-06 5 161115992 161115992 C A GABRA6 Missense_Mutation p.T88N 0.27 tolerated(0.3) probably_damaging(0.91) TCGA-YD-A9TA-06 5 161116124 161116124 C T GABRA6 Missense_Mutation p.P132L 0.26 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 161524864 161524864 G A GABRG2 Missense_Mutation p.R183K 0.42 deleterious(0) possibly_damaging(0.591) TCGA-YD-A9TA-06 5 16670901 16670901 G A MYO10 Missense_Mutation p.P1873S 0.34 tolerated(0.41) benign(0.13) TCGA-YD-A9TA-06 5 16671045 16671045 C T MYO10 Missense_Mutation p.E1825K 0.24 deleterious(0) possibly_damaging(0.492) TCGA-YD-A9TA-06 5 167517608 167517608 G A TENM2 Silent p.K515K 0.24 TCGA-YD-A9TA-06 5 167517609 167517609 G A TENM2 Missense_Mutation p.E516K 0.24 deleterious(0.02) possibly_damaging(0.83) TCGA-YD-A9TA-06 5 168096985 168096985 C T SLIT3 Missense_Mutation p.G1380E 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 168098231 168098231 C T SLIT3 Missense_Mutation p.E1367K 0.29 tolerated(0.51) benign(0.217) TCGA-YD-A9TA-06 5 168100300 168100300 C T SLIT3 Silent p.V1241V 0.35 TCGA-YD-A9TA-06 5 168112856 168112856 C T SLIT3 Missense_Mutation p.G1131R 0.33 deleterious(0) probably_damaging(0.926) TCGA-YD-A9TA-06 5 168127597 168127597 C T SLIT3 Missense_Mutation p.D978N 0.33 tolerated(0.27) benign(0.032) TCGA-YD-A9TA-06 5 168127598 168127598 C T SLIT3 Silent p.K977K 0.33 TCGA-YD-A9TA-06 5 169715011 169715011 C T LCP2 Missense_Mutation p.E51K 0.20 deleterious(0) possibly_damaging(0.747) TCGA-YD-A9TA-06 5 169805855 169805855 T A KCNMB1 Missense_Mutation p.E143D 0.27 tolerated(0.09) benign(0.083) TCGA-YD-A9TA-06 5 169805857 169805857 C T KCNMB1 Missense_Mutation p.E143K 0.27 tolerated(0.09) possibly_damaging(0.823) TCGA-YD-A9TA-06 5 170818387 170818387 A C NPM1 Missense_Mutation p.K73Q 0.31 deleterious(0.01) benign(0.238) TCGA-YD-A9TA-06 5 175307055 175307055 C T CPLX2 3'UTR 0.44 TCGA-YD-A9TA-06 5 176016175 176016175 G A CDHR2 Silent p.G1000G 0.33 TCGA-YD-A9TA-06 5 176794475 176794475 G A RGS14 Missense_Mutation p.E182K 0.53 tolerated(0.08) probably_damaging(0.917) TCGA-YD-A9TA-06 5 176821082 176821082 C T SLC34A1 Silent p.L354L 0.31 TCGA-YD-A9TA-06 5 176931644 176931644 C T DOK3 Silent p.E277E 0.52 TCGA-YD-A9TA-06 5 177690223 177690223 C T COL23A1 Missense_Mutation p.A209T 0.29 tolerated(0.47) benign(0.026) TCGA-YD-A9TA-06 5 178358847 178358847 G A ZFP2 Missense_Mutation p.R178Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 5 178373945 178373945 G A ZNF454 Missense_Mutation p.E70K 0.26 deleterious(0.01) benign(0.039) TCGA-YD-A9TA-06 5 178408678 178408678 C T GRM6 Missense_Mutation p.D872N 0.41 tolerated_low_confidence(0.68) benign(0) TCGA-YD-A9TA-06 5 179151733 179151733 G A CANX Missense_Mutation p.E532K 0.42 tolerated(0.47) benign(0.006) TCGA-YD-A9TA-06 5 1798875 1798875 G A MRPL36 Missense_Mutation p.H59Y 0.36 tolerated(1) benign(0.004) TCGA-YD-A9TA-06 5 180056334 180056334 C T FLT4 Missense_Mutation p.D304N 0.44 deleterious(0.03) possibly_damaging(0.577) TCGA-YD-A9TA-06 5 180219558 180219558 G A MGAT1 Silent p.I138I 0.38 TCGA-YD-A9TA-06 5 180377389 180377389 A G BTNL8 Missense_Mutation p.N450D 0.30 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 5 180377397 180377397 A C BTNL8 Missense_Mutation p.Q452H 0.27 deleterious(0.04) benign(0.272) TCGA-YD-A9TA-06 5 19503201 19503201 A T CDH18 Missense_Mutation p.S510R 0.37 tolerated(0.14) benign(0.001) TCGA-YD-A9TA-06 5 19747249 19747249 C T CDH18 Missense_Mutation p.D109N 0.46 tolerated(0.16) probably_damaging(0.998) TCGA-YD-A9TA-06 5 233630 233630 C T SDHA Missense_Mutation p.R312C 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-YD-A9TA-06 5 23521159 23521159 G A PRDM9 Missense_Mutation p.E127K 0.36 tolerated_low_confidence(0.23) benign(0.001) TCGA-YD-A9TA-06 5 23521200 23521200 G A PRDM9 Silent p.L140L 0.43 TCGA-YD-A9TA-06 5 23522412 23522412 G A PRDM9 Splice_Site p.X170_splice 0.38 TCGA-YD-A9TA-06 5 24537658 24537658 C T CDH10 Silent p.R119R 0.31 TCGA-YD-A9TA-06 5 26885787 26885787 G A CDH9 Silent p.I606I 0.58 TCGA-YD-A9TA-06 5 26885821 26885821 C T CDH9 Missense_Mutation p.G595E 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A9TA-06 5 26885885 26885885 C T CDH9 Missense_Mutation p.D574N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 5 31317512 31317512 G A CDH6 Missense_Mutation p.D515N 0.30 deleterious(0) possibly_damaging(0.898) TCGA-YD-A9TA-06 5 31323108 31323108 G A CDH6 Missense_Mutation p.R689Q 0.60 deleterious(0.02) probably_damaging(0.992) TCGA-YD-A9TA-06 5 31323492 31323492 C A CDH6 3'UTR 0.59 TCGA-YD-A9TA-06 5 31437378 31437378 G A DROSHA Silent p.F970F 0.19 TCGA-YD-A9TA-06 5 32088390 32088390 G T PDZD2 Silent p.S1612S 0.56 TCGA-YD-A9TA-06 5 32088972 32088972 T C PDZD2 Silent p.N1806N 0.40 TCGA-YD-A9TA-06 5 32390417 32390417 G A ZFR Silent p.V702V 0.27 TCGA-YD-A9TA-06 5 32404031 32404031 G A ZFR Missense_Mutation p.R402C 0.57 deleterious(0) unknown(0) TCGA-YD-A9TA-06 5 32739008 32739008 G A NPR3 Missense_Mutation p.E311K 0.58 tolerated(0.58) benign(0.394) TCGA-YD-A9TA-06 5 32789659 32789659 G A AC026703.1 Missense_Mutation p.R51K 0.51 benign(0.14) TCGA-YD-A9TA-06 5 33461833 33461833 C T TARS Missense_Mutation p.A571V 0.59 deleterious(0) possibly_damaging(0.725) TCGA-YD-A9TA-06 5 33576736 33576736 G A ADAMTS12 Missense_Mutation p.S1132F 0.27 tolerated(0.27) possibly_damaging(0.553) TCGA-YD-A9TA-06 5 33658377 33658377 C T ADAMTS12 Missense_Mutation p.G368R 0.14 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 33881461 33881461 C T ADAMTS12 Silent p.L84L 0.28 TCGA-YD-A9TA-06 5 34033554 34033554 C T C1QTNF3 Missense_Mutation p.G142E 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 34796051 34796051 C G RAI14 Missense_Mutation p.L62V 0.25 tolerated(0.4) probably_damaging(0.999) TCGA-YD-A9TA-06 5 34941215 34941215 G A DNAJC21 Missense_Mutation p.E304K 0.54 deleterious(0.03) benign(0.219) TCGA-YD-A9TA-06 5 35003930 35003930 G A AGXT2 Nonsense_Mutation p.Q459* 0.10 TCGA-YD-A9TA-06 5 35065176 35065176 C T PRLR 3'UTR 0.43 TCGA-YD-A9TA-06 5 35065248 35065248 G A PRLR Silent p.L604L 0.23 TCGA-YD-A9TA-06 5 35065629 35065629 C T PRLR Silent p.R477R 0.59 TCGA-YD-A9TA-06 5 35779424 35779424 C T SPEF2 Nonsense_Mutation p.Q1475* 0.49 TCGA-YD-A9TA-06 5 35807289 35807289 C T SPEF2 Silent p.V1771V 0.30 TCGA-YD-A9TA-06 5 35871232 35871232 A T IL7R Missense_Mutation p.T152S 0.23 deleterious(0.01) possibly_damaging(0.607) TCGA-YD-A9TA-06 5 35876595 35876595 A C IL7R 3'UTR 0.10 TCGA-YD-A9TA-06 5 35954498 35954498 C T UGT3A1 Missense_Mutation p.D460N 0.61 tolerated(0.36) benign(0.05) TCGA-YD-A9TA-06 5 35965913 35965913 C T UGT3A1 Missense_Mutation p.D140N 0.21 deleterious(0) probably_damaging(0.976) TCGA-YD-A9TA-06 5 35965946 35965946 C T UGT3A1 Missense_Mutation p.D129N 0.10 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 35991356 35991356 G A UGT3A1 5'UTR 0.33 TCGA-YD-A9TA-06 5 36049131 36049131 G A UGT3A2 Missense_Mutation p.P235S 0.40 deleterious(0.05) probably_damaging(0.951) TCGA-YD-A9TA-06 5 36066867 36066867 G C UGT3A2 Missense_Mutation p.L9V 0.29 deleterious(0.01) possibly_damaging(0.556) TCGA-YD-A9TA-06 5 36608579 36608579 C T SLC1A3 Silent p.F18F 0.35 TCGA-YD-A9TA-06 5 36686326 36686326 G A SLC1A3 Silent p.Q528Q 0.12 TCGA-YD-A9TA-06 5 37154075 37154075 G A C5orf42 Nonsense_Mutation p.R2660* 0.24 TCGA-YD-A9TA-06 5 37337949 37337949 G A NUP155 Missense_Mutation p.P440S 0.20 deleterious(0.02) benign(0.11) TCGA-YD-A9TA-06 5 38370509 38370509 G A EGFLAM Missense_Mutation p.M219I 0.72 tolerated_low_confidence(0.15) benign(0.002) TCGA-YD-A9TA-06 5 38406258 38406258 G A EGFLAM Missense_Mutation p.G248E 0.46 deleterious_low_confidence(0.03) benign(0.216) TCGA-YD-A9TA-06 5 38409141 38409141 G A EGFLAM Silent p.G428G 0.19 TCGA-YD-A9TA-06 5 38409142 38409142 G A EGFLAM Missense_Mutation p.E429K 0.19 deleterious(0.02) possibly_damaging(0.896) TCGA-YD-A9TA-06 5 38427214 38427214 G A EGFLAM Silent p.E638E 0.24 TCGA-YD-A9TA-06 5 38493741 38493741 G A LIFR Missense_Mutation p.P678S 0.50 tolerated(0.11) benign(0.285) TCGA-YD-A9TA-06 5 38528851 38528851 A T LIFR Missense_Mutation p.D78E 0.71 tolerated(1) benign(0) TCGA-YD-A9TA-06 5 38883995 38883995 C T OSMR Missense_Mutation p.T162I 0.18 deleterious(0) benign(0.001) TCGA-YD-A9TA-06 5 38885450 38885450 G A OSMR Splice_Site p.X235_splice 0.55 TCGA-YD-A9TA-06 5 39289024 39289024 C T C9 Silent p.V482V 0.50 TCGA-YD-A9TA-06 5 39306753 39306753 G A C9 Missense_Mutation p.S461F 0.23 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 5 40835334 40835334 C T RPL37 5'UTR 0.68 TCGA-YD-A9TA-06 5 40854314 40854314 C T CARD6 Silent p.F960F 0.27 TCGA-YD-A9TA-06 5 40964869 40964869 G A C7 Silent p.G592G 0.26 TCGA-YD-A9TA-06 5 41005671 41005671 C T MROH2B Missense_Mutation p.E1276K 0.19 tolerated(0.05) possibly_damaging(0.834) TCGA-YD-A9TA-06 5 41005672 41005672 C T MROH2B Silent p.S1275S 0.19 TCGA-YD-A9TA-06 5 41009403 41009403 G A MROH2B Silent p.I1133I 0.29 TCGA-YD-A9TA-06 5 41058248 41058248 C T MROH2B Missense_Mutation p.D225N 0.42 deleterious(0.02) possibly_damaging(0.824) TCGA-YD-A9TA-06 5 41058251 41058251 C T MROH2B Missense_Mutation p.E224K 0.44 deleterious(0.01) benign(0.162) TCGA-YD-A9TA-06 5 42695033 42695033 G A GHR Nonsense_Mutation p.W94* 0.60 TCGA-YD-A9TA-06 5 42719243 42719243 C T GHR Missense_Mutation p.P545L 0.20 tolerated(0.17) benign(0.158) TCGA-YD-A9TA-06 5 43277235 43277235 C T NIM1K Silent p.S123S 0.64 TCGA-YD-A9TA-06 5 43649344 43649344 C T NNT Missense_Mutation p.H514Y 0.23 tolerated(0.28) probably_damaging(0.998) TCGA-YD-A9TA-06 5 45396799 45396799 C T HCN1 Missense_Mutation p.G342E 0.31 deleterious(0.03) probably_damaging(0.955) TCGA-YD-A9TA-06 5 484763 484763 G A SLC9A3 Silent p.F268F 0.43 TCGA-YD-A9TA-06 5 49699234 49699234 C T EMB Missense_Mutation p.E219K 0.25 tolerated(0.14) possibly_damaging(0.69) TCGA-YD-A9TA-06 5 50092998 50092998 C T PARP8 Silent p.I502I 0.24 TCGA-YD-A9TA-06 5 50117137 50117137 C T PARP8 Missense_Mutation p.P587S 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-YD-A9TA-06 5 52177709 52177709 G A ITGA1 Missense_Mutation p.G210E 0.50 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 52371052 52371052 G A ITGA2 Missense_Mutation p.E915K 0.32 deleterious(0.03) probably_damaging(0.932) TCGA-YD-A9TA-06 5 5303701 5303701 G A ADAMTS16 Missense_Mutation p.G1003E 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-YD-A9TA-06 5 54277896 54277896 C T ESM1 Missense_Mutation p.G127E 0.45 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 5 5461547 5461547 G A KIAA0947 Silent p.E700E 0.33 TCGA-YD-A9TA-06 5 5462453 5462453 G A KIAA0947 Missense_Mutation p.M1002I 0.57 tolerated(0.29) benign(0) TCGA-YD-A9TA-06 5 5464624 5464624 C A KIAA0947 Missense_Mutation p.P1726H 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 55168105 55168105 G A IL31RA Missense_Mutation p.G94R 0.41 tolerated(0.15) benign(0.046) TCGA-YD-A9TA-06 5 55168188 55168188 G A IL31RA Silent p.T121T 0.47 TCGA-YD-A9TA-06 5 58289222 58289222 T G PDE4D Missense_Mutation p.E331A 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.7) TCGA-YD-A9TA-06 5 59284497 59284497 G T PDE4D Missense_Mutation p.F30L 0.43 tolerated_low_confidence(1) benign(0) TCGA-YD-A9TA-06 5 64756032 64756032 C T ADAMTS6 Missense_Mutation p.R199Q 0.27 tolerated(0.55) benign(0.002) TCGA-YD-A9TA-06 5 66426246 66426246 G A MAST4 Missense_Mutation p.G652R 0.31 probably_damaging(0.948) TCGA-YD-A9TA-06 5 67593399 67593399 C A PIK3R1 Silent p.A715A 0.35 TCGA-YD-A9TA-06 5 68863594 68863594 C A GTF2H2C Missense_Mutation p.P100H 0.39 deleterious(0) probably_damaging(0.957) TCGA-YD-A9TA-06 5 71492659 71492659 C T MAP1B Silent p.F1159F 0.44 TCGA-YD-A9TA-06 5 75932998 75932998 C T IQGAP2 Silent p.I640I 0.46 TCGA-YD-A9TA-06 5 76171280 76171280 G A S100Z Silent p.G32G 0.44 TCGA-YD-A9TA-06 5 76714078 76714078 G A PDE8B Missense_Mutation p.V646M 0.18 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 5 77452085 77452085 G A AP3B1 Silent p.I490I 0.25 TCGA-YD-A9TA-06 5 78301119 78301119 C T DMGDH Missense_Mutation p.E788K 0.33 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 5 78359496 78359496 C T DMGDH Silent p.G72G 0.52 TCGA-YD-A9TA-06 5 78359606 78359606 C T DMGDH Missense_Mutation p.E36K 0.54 deleterious_low_confidence(0.03) benign(0.08) TCGA-YD-A9TA-06 5 79026611 79026611 G A CMYA5 Missense_Mutation p.E675K 0.58 benign(0.011) TCGA-YD-A9TA-06 5 79030877 79030877 C T CMYA5 Missense_Mutation p.P2097S 0.20 benign(0.01) TCGA-YD-A9TA-06 5 79473136 79473136 C T SERINC5 Splice_Site p.X153_splice 0.52 TCGA-YD-A9TA-06 5 80381686 80381686 G A RASGRF2 Silent p.R409R 0.46 TCGA-YD-A9TA-06 5 80655740 80655740 C T ACOT12 Missense_Mutation p.E160K 0.21 tolerated(0.1) benign(0.02) TCGA-YD-A9TA-06 5 81613976 81613976 C T ATP6AP1L Nonsense_Mutation p.Q178* 0.52 TCGA-YD-A9TA-06 5 82817900 82817900 C T VCAN Missense_Mutation p.P1259S 0.16 tolerated(0.6) benign(0.168) TCGA-YD-A9TA-06 5 82834013 82834013 A C VCAN Missense_Mutation p.T1731P 0.30 tolerated(0.1) benign(0.023) TCGA-YD-A9TA-06 5 82940249 82940249 C T HAPLN1 Silent p.R236R 0.40 TCGA-YD-A9TA-06 5 83356281 83356281 C T EDIL3 Missense_Mutation p.M325I 0.11 tolerated(0.07) benign(0.132) TCGA-YD-A9TA-06 5 83360578 83360578 G A EDIL3 Missense_Mutation p.P298L 0.21 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 83360579 83360579 G A EDIL3 Missense_Mutation p.P298S 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 5 840664 840664 C T ZDHHC11 Missense_Mutation p.D244N 0.35 tolerated(0.32) benign(0.115) TCGA-YD-A9TA-06 5 850760 850760 G C ZDHHC11 5'UTR 0.25 TCGA-YD-A9TA-06 5 87492049 87492049 G A TMEM161B Silent p.H481H 0.42 TCGA-YD-A9TA-06 5 89910783 89910783 C T GPR98 Missense_Mutation p.R52C 0.25 possibly_damaging(0.876) TCGA-YD-A9TA-06 5 89925044 89925044 G A GPR98 Silent p.Q509Q 0.35 TCGA-YD-A9TA-06 5 89949562 89949562 G A GPR98 Missense_Mutation p.E1391K 0.22 possibly_damaging(0.881) TCGA-YD-A9TA-06 5 89953858 89953858 T G GPR98 Missense_Mutation p.S1505R 0.52 benign(0.074) TCGA-YD-A9TA-06 5 89975402 89975402 G A GPR98 Missense_Mutation p.G1827D 0.54 probably_damaging(0.992) TCGA-YD-A9TA-06 5 90070120 90070120 G A GPR98 Missense_Mutation p.G4135S 0.35 probably_damaging(0.934) TCGA-YD-A9TA-06 5 90074262 90074262 C T GPR98 Missense_Mutation p.P4229S 0.12 possibly_damaging(0.857) TCGA-YD-A9TA-06 5 93076960 93076960 A G POU5F2 Missense_Mutation p.Y104H 0.21 tolerated(0.5) benign(0.403) TCGA-YD-A9TA-06 5 94022306 94022306 C T ANKRD32 Silent p.F668F 0.44 TCGA-YD-A9TA-06 5 94134835 94134835 G A MCTP1 Silent p.L813L 0.45 TCGA-YD-A9TA-06 5 94253652 94253652 G C MCTP1 Silent p.V433V 0.17 TCGA-YD-A9TA-06 5 94289002 94289002 A T MCTP1 Missense_Mutation p.I301K 0.23 deleterious(0) probably_damaging(0.985) TCGA-YD-A9TA-06 5 94417166 94417166 C T MCTP1 Intron 0.15 TCGA-YD-A9TA-06 5 95728596 95728596 G A PCSK1 3'UTR 0.52 TCGA-YD-A9TA-06 5 99871576 99871576 C T FAM174A Silent p.N114N 0.17 TCGA-YD-A9TA-06 6 105526352 105526352 G A LIN28B Silent p.K149K 0.54 TCGA-YD-A9TA-06 6 105845768 105845768 G A PREP Missense_Mutation p.P27L 0.23 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 6 106553356 106553356 C T PRDM1 Missense_Mutation p.P441S 0.16 tolerated(0.21) benign(0.088) TCGA-YD-A9TA-06 6 106553357 106553357 C T PRDM1 Missense_Mutation p.P441L 0.15 deleterious(0) possibly_damaging(0.83) TCGA-YD-A9TA-06 6 106992502 106992502 G A AIM1 Missense_Mutation p.G1291E 0.47 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 107390243 107390243 G A BEND3 Missense_Mutation p.P718S 0.43 tolerated(0.74) benign(0.085) TCGA-YD-A9TA-06 6 108246097 108246097 G A SEC63 Silent p.F88F 0.48 TCGA-YD-A9TA-06 6 10882041 10882041 C T GCM2 5'UTR 0.11 TCGA-YD-A9TA-06 6 108984980 108984980 C T FOXO3 Missense_Mutation p.S315F 0.25 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 6 109471353 109471353 C T CEP57L1 Missense_Mutation p.R125C 0.46 deleterious(0) probably_damaging(0.989) TCGA-YD-A9TA-06 6 109773724 109773724 G A MICAL1 Silent p.F222F 0.46 TCGA-YD-A9TA-06 6 110734506 110734506 G A DDO Missense_Mutation p.H82Y 0.22 tolerated(1) possibly_damaging(0.786) TCGA-YD-A9TA-06 6 110763500 110763500 G A SLC22A16 Missense_Mutation p.S377F 0.67 deleterious(0.03) possibly_damaging(0.652) TCGA-YD-A9TA-06 6 110944052 110944052 G A CDK19 Missense_Mutation p.P333S 0.43 tolerated(0.07) benign(0.068) TCGA-YD-A9TA-06 6 111543398 111543398 C T SLC16A10 Missense_Mutation p.S503L 0.61 deleterious_low_confidence(0.03) benign(0.253) TCGA-YD-A9TA-06 6 112390840 112390840 G A WISP3 3'UTR 0.54 TCGA-YD-A9TA-06 6 114378646 114378646 G A HS3ST5 Silent p.F272F 0.58 TCGA-YD-A9TA-06 6 116442699 116442699 C T COL10A1 Missense_Mutation p.G194S 0.27 deleterious(0.01) unknown(0) TCGA-YD-A9TA-06 6 116747865 116747865 C T DSE Missense_Mutation p.A182V 0.19 tolerated(0.57) possibly_damaging(0.756) TCGA-YD-A9TA-06 6 116784550 116784550 G A FAM26F Nonsense_Mutation p.W210* 0.44 TCGA-YD-A9TA-06 6 116833289 116833289 G A FAM26E Missense_Mutation p.G144S 0.17 tolerated(0.23) benign(0.055) TCGA-YD-A9TA-06 6 117127737 117127737 G A GPRC6A Silent p.F377F 0.47 TCGA-YD-A9TA-06 6 117248453 117248453 C T RFX6 Missense_Mutation p.L717F 0.54 tolerated_low_confidence(0.54) benign(0.09) TCGA-YD-A9TA-06 6 11766528 11766528 G A ADTRP Silent p.P141P 0.36 TCGA-YD-A9TA-06 6 117683825 117683825 G A ROS1 Missense_Mutation p.P1108S 0.57 tolerated(0.24) benign(0.055) TCGA-YD-A9TA-06 6 117686321 117686321 C T ROS1 Missense_Mutation p.G1007E 0.23 tolerated(0.2) probably_damaging(0.994) TCGA-YD-A9TA-06 6 117686322 117686322 C T ROS1 Missense_Mutation p.G1007R 0.25 tolerated(0.25) probably_damaging(0.994) TCGA-YD-A9TA-06 6 117686895 117686895 G A ROS1 Missense_Mutation p.S941F 0.23 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 6 119345242 119345242 C T FAM184A Missense_Mutation p.R299Q 0.43 tolerated(1) benign(0.056) TCGA-YD-A9TA-06 6 119345279 119345279 G A FAM184A Missense_Mutation p.L287F 0.43 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 6 119345508 119345508 G A FAM184A Silent p.A210A 0.28 TCGA-YD-A9TA-06 6 119510998 119510998 G A MAN1A1 Silent p.I459I 0.47 TCGA-YD-A9TA-06 6 12122487 12122487 C T HIVEP1 Missense_Mutation p.S820L 0.55 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 6 12125718 12125718 C T HIVEP1 Missense_Mutation p.S1897F 0.22 deleterious(0.01) possibly_damaging(0.775) TCGA-YD-A9TA-06 6 122772895 122772895 G A SERINC1 Missense_Mutation p.S255L 0.82 tolerated(0.64) benign(0.005) TCGA-YD-A9TA-06 6 125397822 125397822 A C RNF217 Missense_Mutation p.E142A 0.78 tolerated(0.16) possibly_damaging(0.856) TCGA-YD-A9TA-06 6 127797203 127797203 C T SOGA3 Silent p.T656T 0.67 TCGA-YD-A9TA-06 6 127899845 127899845 C T C6orf58 Missense_Mutation p.P106S 0.69 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 6 128134804 128134804 G A THEMIS Missense_Mutation p.P328S 0.64 tolerated(0.19) benign(0.187) TCGA-YD-A9TA-06 6 128150684 128150684 G A THEMIS Missense_Mutation p.P216S 0.71 deleterious(0) probably_damaging(0.963) TCGA-YD-A9TA-06 6 128176248 128176248 G A THEMIS Silent p.I59I 0.60 TCGA-YD-A9TA-06 6 128298170 128298170 G A PTPRK Silent p.V1253V 0.69 TCGA-YD-A9TA-06 6 128540077 128540077 A T PTPRK Silent p.L286L 0.72 TCGA-YD-A9TA-06 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.46 unknown(0) TCGA-YD-A9TA-06 6 129802568 129802568 G A LAMA2 Missense_Mutation p.R2578Q 0.58 deleterious(0.04) probably_damaging(1) TCGA-YD-A9TA-06 6 130535630 130535630 G A SAMD3 Missense_Mutation p.R41W 0.86 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-YD-A9TA-06 6 131908938 131908938 G A MED23 Nonsense_Mutation p.R1330* 0.67 TCGA-YD-A9TA-06 6 132891941 132891941 C T TAAR6 Missense_Mutation p.L161F 0.70 tolerated(0.12) benign(0.033) TCGA-YD-A9TA-06 6 133777721 133777721 C T EYA4 Missense_Mutation p.P102L 0.72 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 135263558 135263558 G A ALDH8A1 Missense_Mutation p.P144L 0.67 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 6 136599558 136599558 G A BCLAF1 Missense_Mutation p.P154L 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A9TA-06 6 136599772 136599772 C T BCLAF1 Missense_Mutation p.G83R 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-YD-A9TA-06 6 136922965 136922965 C - MAP3K5 Frame_Shift_Del p.K946Rfs*46 0.09 TCGA-YD-A9TA-06 6 136990492 136990492 C T MAP3K5 Missense_Mutation p.G432E 0.72 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 137019667 137019667 G A MAP3K5 Missense_Mutation p.R256C 0.79 deleterious(0.02) probably_damaging(0.999) TCGA-YD-A9TA-06 6 142764662 142764662 G A GPR126 3'UTR 0.81 TCGA-YD-A9TA-06 6 145948575 145948575 G A EPM2A Missense_Mutation p.R325C 0.71 tolerated_low_confidence(0.07) benign(0.003) TCGA-YD-A9TA-06 6 146351094 146351094 C T GRM1 Silent p.L147L 0.57 TCGA-YD-A9TA-06 6 148852714 148852714 C T SASH1 Missense_Mutation p.P494L 0.74 tolerated(0.12) benign(0.034) TCGA-YD-A9TA-06 6 152464808 152464808 G A SYNE1 Missense_Mutation p.R8357C 0.69 possibly_damaging(0.582) TCGA-YD-A9TA-06 6 152473161 152473161 A G SYNE1 Missense_Mutation p.V8082A 0.64 benign(0.011) TCGA-YD-A9TA-06 6 153019125 153019125 G A MYCT1 Missense_Mutation p.D30N 0.71 tolerated_low_confidence(0.19) benign(0.003) TCGA-YD-A9TA-06 6 154414546 154414546 C T OPRM1 Intron 0.74 TCGA-YD-A9TA-06 6 155139622 155139622 C T SCAF8 Missense_Mutation p.P511S 0.66 deleterious(0.05) probably_damaging(1) TCGA-YD-A9TA-06 6 157527578 157527578 C T ARID1B Missense_Mutation p.P1768L 0.72 possibly_damaging(0.81) TCGA-YD-A9TA-06 6 158487635 158487635 C T SYNJ2 Missense_Mutation p.S562L 0.79 tolerated(0.19) benign(0.017) TCGA-YD-A9TA-06 6 159652945 159652945 G A FNDC1 Silent p.E467E 0.76 TCGA-YD-A9TA-06 6 163235192 163235192 C T PACRG Missense_Mutation p.P57L 0.67 deleterious(0) probably_damaging(0.937) TCGA-YD-A9TA-06 6 163876397 163876397 G A QKI Missense_Mutation p.G77R 0.67 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 165792821 165792821 G A PDE10A Missense_Mutation p.S616F 0.59 deleterious(0) possibly_damaging(0.503) TCGA-YD-A9TA-06 6 167754597 167754597 G A TTLL2 Silent p.V403V 0.71 TCGA-YD-A9TA-06 6 167787872 167787872 G A TCP10 Silent p.F252F 0.33 TCGA-YD-A9TA-06 6 170628013 170628013 C T FAM120B Missense_Mutation p.T512I 0.73 tolerated_low_confidence(0.22) benign(0.007) TCGA-YD-A9TA-06 6 24547301 24547301 G A KIAA0319 3'UTR 0.60 TCGA-YD-A9TA-06 6 25845634 25845634 T C SLC17A3 Silent p.K491K 0.71 TCGA-YD-A9TA-06 6 26251904 26251904 C T HIST1H2BH Missense_Mutation p.P9L 0.70 deleterious_low_confidence(0.02) unknown(0) TCGA-YD-A9TA-06 6 27925766 27925766 C T OR2B6 Missense_Mutation p.L250F 0.60 deleterious(0.02) possibly_damaging(0.848) TCGA-YD-A9TA-06 6 28872288 28872288 G A TRIM27 Silent p.I367I 0.71 TCGA-YD-A9TA-06 6 29274714 29274714 C T OR14J1 Missense_Mutation p.S83L 0.61 deleterious(0) possibly_damaging(0.493) TCGA-YD-A9TA-06 6 29364932 29364932 C T OR12D2 Silent p.F152F 0.81 TCGA-YD-A9TA-06 6 30080452 30080452 C T TRIM31 Missense_Mutation p.G44E 0.39 tolerated(0.19) benign(0.345) TCGA-YD-A9TA-06 6 30131599 30131599 G A TRIM15 Missense_Mutation p.M46I 0.26 tolerated(0.65) possibly_damaging(0.583) TCGA-YD-A9TA-06 6 30231295 30231295 A C HCG17 Intron 0.60 TCGA-YD-A9TA-06 6 30691874 30691874 C T TUBB Silent p.I345I 0.32 TCGA-YD-A9TA-06 6 30889021 30889021 C T VARS2 Missense_Mutation p.S554F 0.31 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 30919748 30919748 C T DPCR1 Silent p.H1169H 0.36 TCGA-YD-A9TA-06 6 30919826 30919826 A T DPCR1 Silent p.I1195I 0.11 TCGA-YD-A9TA-06 6 31084839 31084839 C T CDSN Missense_Mutation p.G185R 0.45 tolerated_low_confidence(0.42) unknown(0) TCGA-YD-A9TA-06 6 31106880 31106880 G A PSORS1C2 5'UTR 0.40 TCGA-YD-A9TA-06 6 31122525 31122525 G A CCHCR1 Silent p.I183I 0.40 TCGA-YD-A9TA-06 6 31545336 31545336 C T TNF 3'UTR 0.37 TCGA-YD-A9TA-06 6 31545337 31545337 C T TNF 3'UTR 0.36 TCGA-YD-A9TA-06 6 31601189 31601189 C T PRRC2A Silent p.P1451P 0.34 TCGA-YD-A9TA-06 6 31609701 31609701 G A BAG6 Missense_Mutation p.S756F 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-YD-A9TA-06 6 31660842 31660842 G A ABHD16A Silent p.L196L 0.38 TCGA-YD-A9TA-06 6 31660903 31660903 G A ABHD16A Missense_Mutation p.S176F 0.44 deleterious(0.01) benign(0.44) TCGA-YD-A9TA-06 6 31675666 31675666 G A LY6G6F Missense_Mutation p.R134K 0.29 tolerated(0.47) benign(0) TCGA-YD-A9TA-06 6 31675667 31675667 G A LY6G6F Silent p.R134R 0.29 TCGA-YD-A9TA-06 6 31760072 31760072 G A VARS Missense_Mutation p.P265S 0.38 tolerated(0.13) benign(0.054) TCGA-YD-A9TA-06 6 31795669 31795669 C T HSPA1B 5'UTR 0.56 TCGA-YD-A9TA-06 6 31913052 31913052 G A C2 Missense_Mutation p.R726Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 6 32065750 32065750 G A TNXB Missense_Mutation p.R76C 0.36 probably_damaging(0.988) TCGA-YD-A9TA-06 6 32180314 32180314 C T NOTCH4 Missense_Mutation p.G873R 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 32180939 32180939 C T NOTCH4 Missense_Mutation p.G804E 0.33 tolerated(0.29) benign(0.002) TCGA-YD-A9TA-06 6 32184737 32184737 G A NOTCH4 Missense_Mutation p.P616S 0.41 tolerated(0.74) possibly_damaging(0.9) TCGA-YD-A9TA-06 6 32184738 32184738 G A NOTCH4 Silent p.C615C 0.41 TCGA-YD-A9TA-06 6 32188356 32188356 C T NOTCH4 Missense_Mutation p.G329R 0.43 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 32261670 32261670 C T C6orf10 Silent p.T260T 0.35 TCGA-YD-A9TA-06 6 32726852 32726852 G A HLA-DQB2 Silent p.L141L 0.28 TCGA-YD-A9TA-06 6 32819902 32819902 G A TAP1 Silent p.F336F 0.30 TCGA-YD-A9TA-06 6 32904865 32904865 C T HLA-DMB Intron 0.40 TCGA-YD-A9TA-06 6 32975993 32975993 C T HLA-DOA Missense_Mutation p.G43D 0.30 tolerated(0.52) benign(0.005) TCGA-YD-A9TA-06 6 32975994 32975994 C T HLA-DOA Missense_Mutation p.G43S 0.28 tolerated(0.22) benign(0.035) TCGA-YD-A9TA-06 6 33132059 33132059 G A COL11A2 Silent p.F1599F 0.31 TCGA-YD-A9TA-06 6 33373143 33373143 C T KIFC1 Missense_Mutation p.P424L 0.41 tolerated(0.07) possibly_damaging(0.869) TCGA-YD-A9TA-06 6 34059742 34059742 C T GRM4 Nonsense_Mutation p.W218* 0.38 TCGA-YD-A9TA-06 6 34101179 34101179 C T GRM4 Missense_Mutation p.G32E 0.48 tolerated(0.22) benign(0.05) TCGA-YD-A9TA-06 6 35086000 35086000 G A TCP11 3'UTR 0.50 TCGA-YD-A9TA-06 6 35960338 35960338 G A SLC26A8 Silent p.F247F 0.45 TCGA-YD-A9TA-06 6 36291251 36291251 C T C6orf222 Silent p.R430R 0.39 TCGA-YD-A9TA-06 6 38312782 38312782 G A BTBD9 Silent p.F414F 0.37 TCGA-YD-A9TA-06 6 3850774 3850774 C T FAM50B Silent p.I243I 0.49 TCGA-YD-A9TA-06 6 38652267 38652267 G A GLO1 Missense_Mutation p.P64L 0.36 deleterious(0.02) possibly_damaging(0.895) TCGA-YD-A9TA-06 6 38758167 38758167 C T DNAH8 Nonsense_Mutation p.Q706* 0.28 TCGA-YD-A9TA-06 6 38783410 38783410 G A DNAH8 Missense_Mutation p.G950E 0.50 benign(0.001) TCGA-YD-A9TA-06 6 39040779 39040779 C T GLP1R Silent p.L217L 0.45 TCGA-YD-A9TA-06 6 39267324 39267324 C T KCNK17 Missense_Mutation p.G293E 0.28 tolerated(0.23) benign(0.013) TCGA-YD-A9TA-06 6 39278692 39278692 G A KCNK17 Missense_Mutation p.S110F 0.42 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 6 39285685 39285685 G A KCNK16 Silent p.F124F 0.32 TCGA-YD-A9TA-06 6 4077650 4077650 T A FAM217A 5'UTR 0.54 TCGA-YD-A9TA-06 6 40999797 40999797 G A UNC5CL Silent p.S343S 0.33 TCGA-YD-A9TA-06 6 41160191 41160191 G A TREML2 Missense_Mutation p.P314S 0.17 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-YD-A9TA-06 6 41160609 41160609 C T TREML2 Silent p.G272G 0.33 TCGA-YD-A9TA-06 6 4130438 4130438 G A C6orf201 3'UTR 0.48 TCGA-YD-A9TA-06 6 41708257 41708257 C T PGC Missense_Mutation p.E247K 0.27 deleterious(0.05) benign(0.27) TCGA-YD-A9TA-06 6 42200505 42200505 G A TRERF1 Silent p.Y1064Y 0.52 TCGA-YD-A9TA-06 6 43154989 43154989 C T CUL9 Missense_Mutation p.P465S 0.44 tolerated(0.27) benign(0.019) TCGA-YD-A9TA-06 6 43226934 43226934 C T TTBK1 Missense_Mutation p.P392L 0.41 benign(0.004) TCGA-YD-A9TA-06 6 43415556 43415556 C T ABCC10 Silent p.G1280G 0.38 TCGA-YD-A9TA-06 6 43514305 43514305 C T XPO5 Intron 0.47 TCGA-YD-A9TA-06 6 44121862 44121862 C T TMEM63B Silent p.I721I 0.41 TCGA-YD-A9TA-06 6 45390356 45390356 C T RUNX2 Missense_Mutation p.P29S 0.31 deleterious(0) benign(0.017) TCGA-YD-A9TA-06 6 46108032 46108032 C T ENPP4 Missense_Mutation p.H238Y 0.38 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 46129273 46129273 A G ENPP5 Silent p.P408P 0.44 TCGA-YD-A9TA-06 6 46656336 46656336 C T TDRD6 Silent p.F157F 0.37 TCGA-YD-A9TA-06 6 46800999 46800999 C T MEP1A Missense_Mutation p.L445F 0.36 tolerated(0.05) possibly_damaging(0.654) TCGA-YD-A9TA-06 6 46806854 46806854 C T MEP1A Missense_Mutation p.S741F 0.44 tolerated(0.76) benign(0.002) TCGA-YD-A9TA-06 6 46823788 46823788 G A GPR116 Missense_Mutation p.S1295F 0.30 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 6 46827106 46827106 G A GPR116 Missense_Mutation p.S845F 0.40 tolerated(0.84) benign(0.008) TCGA-YD-A9TA-06 6 47577017 47577017 A G CD2AP Silent p.V597V 0.05 TCGA-YD-A9TA-06 6 47658284 47658284 G A GPR111 Missense_Mutation p.E638K 0.38 deleterious(0.01) benign(0.347) TCGA-YD-A9TA-06 6 47682595 47682595 G A GPR115 Silent p.E538E 0.50 TCGA-YD-A9TA-06 6 47763251 47763251 C T OPN5 Silent p.F236F 0.53 TCGA-YD-A9TA-06 6 47776045 47776045 C T OPN5 Silent p.I304I 0.46 TCGA-YD-A9TA-06 6 49604372 49604372 G A RHAG Missense_Mutation p.P52S 0.34 deleterious(0.04) benign(0.083) TCGA-YD-A9TA-06 6 49754773 49754773 G A PGK2 Missense_Mutation p.S43F 0.43 deleterious(0) possibly_damaging(0.555) TCGA-YD-A9TA-06 6 49754948 49754948 G A PGK2 5'UTR 0.32 TCGA-YD-A9TA-06 6 4996202 4996202 G A RPP40 Silent p.L292L 0.24 TCGA-YD-A9TA-06 6 51523958 51523958 C T PKHD1 Missense_Mutation p.E3656K 0.25 tolerated(0.1) benign(0.298) TCGA-YD-A9TA-06 6 51613096 51613096 G A PKHD1 Silent p.I3106I 0.24 TCGA-YD-A9TA-06 6 51774199 51774199 G A PKHD1 Silent p.I2188I 0.44 TCGA-YD-A9TA-06 6 51897902 51897902 G A PKHD1 Missense_Mutation p.P1097L 0.36 deleterious(0.03) benign(0.201) TCGA-YD-A9TA-06 6 51935856 51935856 C T PKHD1 Silent p.Q205Q 0.56 TCGA-YD-A9TA-06 6 52344552 52344552 G A EFHC1 Missense_Mutation p.R536Q 0.57 tolerated(0.65) benign(0.001) TCGA-YD-A9TA-06 6 52767168 52767168 C T GSTA3 Missense_Mutation p.G83E 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-YD-A9TA-06 6 53135425 53135425 G A ELOVL5 Missense_Mutation p.S268F 0.27 deleterious(0) probably_damaging(0.952) TCGA-YD-A9TA-06 6 53883805 53883805 C T MLIP 5'UTR 0.41 TCGA-YD-A9TA-06 6 55039312 55039312 C T HCRTR2 5'UTR 0.65 TCGA-YD-A9TA-06 6 55196530 55196530 G A GFRAL Missense_Mutation p.E14K 0.33 tolerated(0.18) benign(0.004) TCGA-YD-A9TA-06 6 55620391 55620391 G A BMP5 Silent p.S435S 0.18 TCGA-YD-A9TA-06 6 55684508 55684508 C T BMP5 Missense_Mutation p.E210K 0.34 tolerated(0.87) benign(0.014) TCGA-YD-A9TA-06 6 55684541 55684541 G A BMP5 Missense_Mutation p.R199W 0.44 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 55924878 55924878 C T COL21A1 Missense_Mutation p.G849E 0.42 deleterious(0) possibly_damaging(0.65) TCGA-YD-A9TA-06 6 55935570 55935570 T C COL21A1 Silent p.Q664Q 0.26 TCGA-YD-A9TA-06 6 56044681 56044681 C T COL21A1 Missense_Mutation p.G112E 0.42 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 6 56917933 56917933 T A KIAA1586 Silent p.V212V 0.40 TCGA-YD-A9TA-06 6 6167705 6167705 C T F13A1 Missense_Mutation p.E632K 0.44 tolerated(1) benign(0) TCGA-YD-A9TA-06 6 64394648 64394648 C T PHF3 Missense_Mutation p.S342F 0.25 deleterious_low_confidence(0.03) benign(0.265) TCGA-YD-A9TA-06 6 64395032 64395032 A G PHF3 Missense_Mutation p.D470G 0.42 deleterious_low_confidence(0.02) benign(0.005) TCGA-YD-A9TA-06 6 70070835 70070835 G A BAI3 Missense_Mutation p.D1224N 0.48 deleterious(0.03) benign(0.034) TCGA-YD-A9TA-06 6 70642687 70642687 C T COL19A1 Nonsense_Mutation p.Q227* 0.17 TCGA-YD-A9TA-06 6 70935703 70935703 C T COL9A1 Missense_Mutation p.G838E 0.40 probably_damaging(0.993) TCGA-YD-A9TA-06 6 72960118 72960118 G A RIMS1 Missense_Mutation p.R776H 0.53 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TA-06 6 73000445 73000445 C T RIMS1 Silent p.V1206V 0.24 TCGA-YD-A9TA-06 6 73102426 73102426 G A RIMS1 Missense_Mutation p.G1511E 0.53 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 6 7374355 7374355 G A CAGE1 Missense_Mutation p.P233S 0.36 tolerated(1) benign(0.013) TCGA-YD-A9TA-06 6 7568820 7568820 C T DSP Nonsense_Mutation p.Q473* 0.18 TCGA-YD-A9TA-06 6 75799897 75799897 C T COL12A1 Missense_Mutation p.G2957E 0.29 probably_damaging(1) TCGA-YD-A9TA-06 6 7583351 7583351 G C DSP Missense_Mutation p.E1952D 0.43 benign(0.155) TCGA-YD-A9TA-06 6 75847170 75847170 C T COL12A1 Missense_Mutation p.E1793K 0.50 benign(0.174) TCGA-YD-A9TA-06 6 7585063 7585063 A T DSP Missense_Mutation p.K2523M 0.25 probably_damaging(0.998) TCGA-YD-A9TA-06 6 7585064 7585064 G A DSP Silent p.K2523K 0.25 TCGA-YD-A9TA-06 6 7585086 7585086 C T DSP Nonsense_Mutation p.Q2531* 0.23 TCGA-YD-A9TA-06 6 75858121 75858121 G A COL12A1 Nonsense_Mutation p.R1414* 0.41 TCGA-YD-A9TA-06 6 75893127 75893127 G A COL12A1 Silent p.F510F 0.20 TCGA-YD-A9TA-06 6 76599845 76599845 C T MYO6 Silent p.L910L 0.30 TCGA-YD-A9TA-06 6 76751711 76751711 C T IMPG1 Missense_Mutation p.R67Q 0.30 deleterious(0.02) benign(0.22) TCGA-YD-A9TA-06 6 78173031 78173031 G A HTR1B Silent p.S30S 0.12 TCGA-YD-A9TA-06 6 80745071 80745071 C T TTK Missense_Mutation p.P621S 0.47 tolerated(0.07) benign(0.045) TCGA-YD-A9TA-06 6 80877513 80877513 C T BCKDHB Silent p.F154F 0.29 TCGA-YD-A9TA-06 6 83848238 83848238 C T DOPEY1 Silent p.L1493L 0.17 TCGA-YD-A9TA-06 6 83947510 83947510 C T ME1 Missense_Mutation p.E318K 0.40 tolerated(0.79) benign(0.001) TCGA-YD-A9TA-06 6 84025116 84025116 G A ME1 Missense_Mutation p.P206L 0.15 deleterious(0) probably_damaging(0.961) TCGA-YD-A9TA-06 6 84025117 84025117 G A ME1 Missense_Mutation p.P206S 0.15 deleterious(0) possibly_damaging(0.873) TCGA-YD-A9TA-06 6 84372069 84372069 G A SNAP91 Missense_Mutation p.H116Y 0.33 deleterious(0) unknown(0) TCGA-YD-A9TA-06 6 84375284 84375284 G A SNAP91 Silent p.T49T 0.23 TCGA-YD-A9TA-06 6 88125415 88125415 G A C6ORF165 Missense_Mutation p.E99K 0.47 tolerated(0.42) benign(0.012) TCGA-YD-A9TA-06 6 88224689 88224689 G A RARS2 Missense_Mutation p.P546S 0.24 tolerated(0.28) benign(0.062) TCGA-YD-A9TA-06 6 89907845 89907845 G A GABRR1 Missense_Mutation p.P156S 0.24 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TA-06 6 90491143 90491143 G A MDN1 Missense_Mutation p.L540F 0.22 benign(0.077) TCGA-YD-A9TA-06 6 90573478 90573478 C T CASP8AP2 RNA 0.56 TCGA-YD-A9TA-06 6 99283901 99283901 C T POU3F2 Silent p.I384I 0.21 TCGA-YD-A9TA-06 6 99857181 99857181 G A PNISR Missense_Mutation p.P181S 0.22 tolerated(0.2) benign(0.027) TCGA-YD-A9TA-06 7 100001836 100001836 C T ZCWPW1 Missense_Mutation p.R428Q 0.73 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 100086822 100086822 C T NYAP1 Missense_Mutation p.S493L 0.23 deleterious(0.01) benign(0.126) TCGA-YD-A9TA-06 7 100184226 100184226 G A FBXO24 5'Flank 0.28 TCGA-YD-A9TA-06 7 100198263 100198263 G A FBXO24 Missense_Mutation p.R533K 0.43 tolerated_low_confidence(0.35) benign(0) TCGA-YD-A9TA-06 7 100240746 100240746 C T ACTL6B 3'UTR 0.20 TCGA-YD-A9TA-06 7 100240882 100240882 C T ACTL6B Missense_Mutation p.R423Q 0.49 deleterious(0.01) possibly_damaging(0.885) TCGA-YD-A9TA-06 7 100244405 100244405 C T ACTL6B Missense_Mutation p.S329N 0.58 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 7 100247698 100247698 G A ACTL6B Missense_Mutation p.P144S 0.38 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 100386863 100386863 C T ZAN Silent p.V2416V 0.13 TCGA-YD-A9TA-06 7 100549633 100549633 G A MUC3A Missense_Mutation p.E72K 0.29 tolerated(0.12) unknown(0) TCGA-YD-A9TA-06 7 100552646 100552646 C T MUC3A Missense_Mutation p.S466F 0.15 deleterious(0) possibly_damaging(0.644) TCGA-YD-A9TA-06 7 100608284 100608284 C T MUC3A Intron 0.30 TCGA-YD-A9TA-06 7 100677281 100677281 G A MUC17 Missense_Mutation p.E862K 0.20 unknown(0) TCGA-YD-A9TA-06 7 100679686 100679686 C T MUC17 Silent p.I1663I 0.27 TCGA-YD-A9TA-06 7 100680511 100680511 G A MUC17 Silent p.V1938V 0.53 TCGA-YD-A9TA-06 7 100681650 100681650 C T MUC17 Missense_Mutation p.S2318L 0.31 unknown(0) TCGA-YD-A9TA-06 7 100681704 100681704 G A MUC17 Missense_Mutation p.G2336E 0.28 unknown(0) TCGA-YD-A9TA-06 7 100683837 100683837 C T MUC17 Missense_Mutation p.P3047L 0.48 probably_damaging(0.994) TCGA-YD-A9TA-06 7 100686896 100686896 C T MUC17 Missense_Mutation p.P4067S 0.29 benign(0) TCGA-YD-A9TA-06 7 100806552 100806552 C T VGF Missense_Mutation p.E525K 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-YD-A9TA-06 7 102114810 102114810 G A POLR2J Missense_Mutation p.R106W 0.30 deleterious(0) possibly_damaging(0.677) TCGA-YD-A9TA-06 7 102614098 102614098 C T FBXL13 Intron 0.59 TCGA-YD-A9TA-06 7 102993335 102993335 C T PSMC2 Intron 0.54 TCGA-YD-A9TA-06 7 103061297 103061297 G A SLC26A5 Silent p.I60I 0.54 TCGA-YD-A9TA-06 7 103113265 103113265 G A RELN Silent p.Y3459Y 0.34 TCGA-YD-A9TA-06 7 103163960 103163960 G A RELN Silent p.F2456F 0.50 TCGA-YD-A9TA-06 7 103183285 103183285 C T RELN Silent p.G2188G 0.17 TCGA-YD-A9TA-06 7 103234873 103234873 G A RELN Silent p.P1202P 0.22 TCGA-YD-A9TA-06 7 103293087 103293087 G A RELN Silent p.F558F 0.56 TCGA-YD-A9TA-06 7 105182879 105182879 C T RINT1 Missense_Mutation p.P100S 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 7 105205743 105205743 C T RINT1 Nonsense_Mutation p.Q636* 0.37 TCGA-YD-A9TA-06 7 106508108 106508108 C T PIK3CG Silent p.S34S 0.44 TCGA-YD-A9TA-06 7 106508850 106508850 G A PIK3CG Missense_Mutation p.V282M 0.47 tolerated(0.22) benign(0.181) TCGA-YD-A9TA-06 7 107642208 107642208 G A LAMB1 Intron 0.36 TCGA-YD-A9TA-06 7 107708477 107708477 C T LAMB4 Silent p.G810G 0.40 TCGA-YD-A9TA-06 7 107763621 107763621 G A LAMB4 5'UTR 0.44 TCGA-YD-A9TA-06 7 107807368 107807368 G A NRCAM Missense_Mutation p.P1155L 0.44 deleterious(0.01) benign(0.016) TCGA-YD-A9TA-06 7 107875048 107875048 G A NRCAM Missense_Mutation p.A70V 0.59 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 7 111629125 111629125 C T DOCK4 Missense_Mutation p.D137N 0.37 deleterious(0) benign(0.037) TCGA-YD-A9TA-06 7 112724063 112724063 C T GPR85 Silent p.Q238Q 0.55 TCGA-YD-A9TA-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.24 tolerated(0.12) benign(0.063) TCGA-YD-A9TA-06 7 113519652 113519652 C T PPP1R3A Missense_Mutation p.E499K 0.48 tolerated(0.63) benign(0.002) TCGA-YD-A9TA-06 7 113558567 113558567 G A PPP1R3A Missense_Mutation p.S162F 0.26 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 115581000 115581000 G A TFEC Intron 0.29 TCGA-YD-A9TA-06 7 116395504 116395504 G A MET Silent p.K599K 0.18 TCGA-YD-A9TA-06 7 116776237 116776237 C T ST7 Silent p.Y271Y 0.35 TCGA-YD-A9TA-06 7 117864794 117864794 C T ANKRD7 5'UTR 0.16 TCGA-YD-A9TA-06 7 117864795 117864795 C T ANKRD7 5'UTR 0.20 TCGA-YD-A9TA-06 7 117880026 117880026 C T ANKRD7 3'UTR 0.56 TCGA-YD-A9TA-06 7 119914779 119914779 G A KCND2 Silent p.P31P 0.48 TCGA-YD-A9TA-06 7 120478935 120478935 G A TSPAN12 Missense_Mutation p.P61S 0.51 tolerated(0.28) benign(0.033) TCGA-YD-A9TA-06 7 120767212 120767212 C T CPED1 Silent p.F401F 0.52 TCGA-YD-A9TA-06 7 121651007 121651007 C T PTPRZ1 Missense_Mutation p.S636L 0.42 deleterious_low_confidence(0.03) benign(0.282) TCGA-YD-A9TA-06 7 121741444 121741444 G A AASS Nonsense_Mutation p.Q463* 0.29 TCGA-YD-A9TA-06 7 121942221 121942221 G A FEZF1 Missense_Mutation p.R420C 0.30 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 7 122054130 122054130 C T CADPS2 Missense_Mutation p.G861R 0.28 tolerated(0.55) benign(0.297) TCGA-YD-A9TA-06 7 122114563 122114563 G A CADPS2 Missense_Mutation p.R624C 0.30 deleterious(0.03) benign(0.049) TCGA-YD-A9TA-06 7 122774500 122774500 G A SLC13A1 Missense_Mutation p.S299F 0.53 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 7 123302221 123302221 G A LMOD2 Missense_Mutation p.G194E 0.29 deleterious(0) probably_damaging(0.972) TCGA-YD-A9TA-06 7 123508927 123508927 G A HYAL4 Silent p.K200K 0.45 TCGA-YD-A9TA-06 7 123508928 123508928 G A HYAL4 Missense_Mutation p.E201K 0.45 tolerated(0.39) benign(0.075) TCGA-YD-A9TA-06 7 123509217 123509217 C T HYAL4 Missense_Mutation p.A297V 0.47 tolerated(0.3) benign(0.208) TCGA-YD-A9TA-06 7 123593809 123593809 G A SPAM1 Missense_Mutation p.G62E 0.17 tolerated(1) benign(0.027) TCGA-YD-A9TA-06 7 126173545 126173545 G A GRM8 Missense_Mutation p.L631F 0.19 deleterious(0.03) benign(0.392) TCGA-YD-A9TA-06 7 126173554 126173554 C T GRM8 Missense_Mutation p.G628R 0.12 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 127238575 127238575 C T FSCN3 Silent p.I349I 0.22 TCGA-YD-A9TA-06 7 128493766 128493766 C T FLNC Intron 0.53 TCGA-YD-A9TA-06 7 128494149 128494149 G A FLNC Silent p.K2202K 0.13 TCGA-YD-A9TA-06 7 128494918 128494918 G A FLNC Missense_Mutation p.D2363N 0.38 tolerated(0.16) probably_damaging(0.98) TCGA-YD-A9TA-06 7 128495282 128495282 G A FLNC Missense_Mutation p.D2389N 0.52 tolerated(0.15) benign(0.016) TCGA-YD-A9TA-06 7 129910554 129910554 G A CPA2 Missense_Mutation p.E104K 0.20 tolerated(0.3) benign(0.001) TCGA-YD-A9TA-06 7 131122733 131122733 C T MKLN1 Missense_Mutation p.P384S 0.24 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 131122734 131122734 C T MKLN1 Missense_Mutation p.P384L 0.24 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 131866269 131866269 G A PLXNA4 Silent p.I1121I 0.27 TCGA-YD-A9TA-06 7 137597817 137597817 G A CREB3L2 Missense_Mutation p.S168F 0.51 deleterious(0.03) possibly_damaging(0.692) TCGA-YD-A9TA-06 7 138341226 138341226 C T SVOPL Silent p.T167T 0.52 TCGA-YD-A9TA-06 7 138453542 138453542 C T ATP6V0A4 Missense_Mutation p.E92K 0.64 deleterious(0) possibly_damaging(0.555) TCGA-YD-A9TA-06 7 138554418 138554418 G A KIAA1549 Silent p.F1547F 0.67 TCGA-YD-A9TA-06 7 139268614 139268614 G A HIPK2 Silent p.L972L 0.64 TCGA-YD-A9TA-06 7 13940376 13940376 C T ETV1 Missense_Mutation p.G400E 0.42 deleterious(0) probably_damaging(0.981) TCGA-YD-A9TA-06 7 13940395 13940395 G A ETV1 Missense_Mutation p.R394C 0.44 deleterious(0) probably_damaging(0.982) TCGA-YD-A9TA-06 7 13940396 13940396 G A ETV1 Silent p.L393L 0.44 TCGA-YD-A9TA-06 7 139727089 139727089 C T PARP12 Missense_Mutation p.E539K 0.26 tolerated(0.43) possibly_damaging(0.773) TCGA-YD-A9TA-06 7 139813358 139813358 G A KDM7A Missense_Mutation p.P424L 0.29 tolerated(0.14) probably_damaging(0.985) TCGA-YD-A9TA-06 7 140273670 140273670 C T DENND2A Missense_Mutation p.D462N 0.26 deleterious(0) probably_damaging(0.979) TCGA-YD-A9TA-06 7 140434297 140434297 A G BRAF 3'UTR 0.48 TCGA-YD-A9TA-06 7 140501321 140501321 A G BRAF Missense_Mutation p.C251R 0.09 deleterious(0) possibly_damaging(0.862) TCGA-YD-A9TA-06 7 141537872 141537872 C T PRSS37 Missense_Mutation p.R73K 0.41 tolerated(0.78) benign(0.032) TCGA-YD-A9TA-06 7 141619294 141619294 C T OR9A4 Missense_Mutation p.L207F 0.24 deleterious(0) possibly_damaging(0.857) TCGA-YD-A9TA-06 7 141631547 141631547 C T CLEC5A Nonsense_Mutation p.W142* 0.48 TCGA-YD-A9TA-06 7 141635657 141635657 C T CLEC5A Missense_Mutation p.G101E 0.15 tolerated(1) benign(0.001) TCGA-YD-A9TA-06 7 141635707 141635707 G A CLEC5A Silent p.F84F 0.25 TCGA-YD-A9TA-06 7 141730203 141730203 G A MGAM Silent p.R421R 0.41 TCGA-YD-A9TA-06 7 141731546 141731546 G A MGAM Missense_Mutation p.E513K 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-YD-A9TA-06 7 141734602 141734602 C T MGAM Silent p.I640I 0.60 TCGA-YD-A9TA-06 7 141752751 141752751 C T MGAM Silent p.V1042V 0.48 TCGA-YD-A9TA-06 7 141758047 141758047 C T MGAM Silent p.F1246F 0.25 TCGA-YD-A9TA-06 7 141765172 141765172 A T MGAM Missense_Mutation p.I1508F 0.23 deleterious(0) possibly_damaging(0.601) TCGA-YD-A9TA-06 7 141765173 141765173 T A MGAM Missense_Mutation p.I1508N 0.21 deleterious(0) probably_damaging(0.99) TCGA-YD-A9TA-06 7 141770873 141770873 G C MGAM Intron 0.17 TCGA-YD-A9TA-06 7 141773922 141773922 G A MGAM Intron 0.25 TCGA-YD-A9TA-06 7 142028216 142028216 C T TRBV6-1 Silent p.L13L 0.46 TCGA-YD-A9TA-06 7 142111814 142111814 C T TRBV5-7 Missense_Mutation p.E16K 0.46 deleterious(0) benign(0.017) TCGA-YD-A9TA-06 7 142139488 142139488 G A TRBV7-6 Missense_Mutation p.S46L 0.51 deleterious(0.04) benign(0.249) TCGA-YD-A9TA-06 7 142144048 142144048 G A TRBV6-7 Missense_Mutation p.L13F 0.18 tolerated(0.22) benign(0.227) TCGA-YD-A9TA-06 7 142224045 142224045 C T TRBV11-1 Nonsense_Mutation p.W41* 0.17 TCGA-YD-A9TA-06 7 142231636 142231636 G A TRBV10-1 Missense_Mutation p.P94L 0.16 tolerated(0.23) benign(0.015) TCGA-YD-A9TA-06 7 142326801 142326801 G A TRBV19 Silent p.K33K 0.43 TCGA-YD-A9TA-06 7 142575515 142575515 C T TRPV6 Missense_Mutation p.E80K 0.24 deleterious(0) probably_damaging(0.987) TCGA-YD-A9TA-06 7 142612497 142612497 C T TRPV5 Silent p.G422G 0.41 TCGA-YD-A9TA-06 7 142638426 142638426 G A KEL Silent p.P704P 0.47 TCGA-YD-A9TA-06 7 142641412 142641412 C T KEL Missense_Mutation p.D497N 0.46 tolerated(0.43) benign(0.052) TCGA-YD-A9TA-06 7 142649621 142649621 C T KEL Missense_Mutation p.R393Q 0.38 tolerated(0.32) benign(0.015) TCGA-YD-A9TA-06 7 143018470 143018470 C T CLCN1 Missense_Mutation p.S149F 0.22 deleterious(0.04) benign(0.002) TCGA-YD-A9TA-06 7 143018840 143018840 C T CLCN1 Missense_Mutation p.R199C 0.52 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 7 143018928 143018928 C T CLCN1 Missense_Mutation p.P228L 0.24 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 7 143027924 143027924 G A CLCN1 Missense_Mutation p.G305R 0.31 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 143048895 143048895 C T CLCN1 Missense_Mutation p.S935F 0.52 tolerated_low_confidence(0.15) benign(0.004) TCGA-YD-A9TA-06 7 143095447 143095447 C T EPHA1 Silent p.A477A 0.21 TCGA-YD-A9TA-06 7 143141175 143141175 C T TAS2R60 Silent p.F210F 0.47 TCGA-YD-A9TA-06 7 143141230 143141230 C T TAS2R60 Missense_Mutation p.L229F 0.47 tolerated(0.71) benign(0.085) TCGA-YD-A9TA-06 7 143174982 143174982 C T TAS2R41 Missense_Mutation p.T6M 0.27 deleterious(0) unknown(0) TCGA-YD-A9TA-06 7 143421724 143421724 C T FAM115C Silent p.A813A 0.28 TCGA-YD-A9TA-06 7 143453626 143453626 C G CTAGE6 Missense_Mutation p.E376Q 0.14 tolerated(0.18) benign(0.251) TCGA-YD-A9TA-06 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.43 TCGA-YD-A9TA-06 7 143701854 143701854 C T OR6B1 Silent p.F255F 0.21 TCGA-YD-A9TA-06 7 143748032 143748032 G A OR2A5 Missense_Mutation p.E180K 0.22 deleterious(0) probably_damaging(0.973) TCGA-YD-A9TA-06 7 143792672 143792672 C T OR2A12 Missense_Mutation p.H158Y 0.35 deleterious(0.04) probably_damaging(0.956) TCGA-YD-A9TA-06 7 143827018 143827018 A T OR2A14 Missense_Mutation p.K271N 0.28 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TA-06 7 144015578 144015578 C T OR2A1 Missense_Mutation p.R121C 0.27 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 7 144098399 144098399 C T NOBOX Missense_Mutation p.G195E 0.28 deleterious(0.03) probably_damaging(0.945) TCGA-YD-A9TA-06 7 146741093 146741093 G A CNTNAP2 Nonsense_Mutation p.W166* 0.49 TCGA-YD-A9TA-06 7 146829553 146829553 C T CNTNAP2 Missense_Mutation p.H434Y 0.47 tolerated(0.87) benign(0.001) TCGA-YD-A9TA-06 7 1474180 1474180 G A MICALL2 3'UTR 0.32 TCGA-YD-A9TA-06 7 1478622 1478622 G A MICALL2 Missense_Mutation p.P659L 0.41 deleterious(0) benign(0.037) TCGA-YD-A9TA-06 7 147964207 147964207 G A CNTNAP2 Missense_Mutation p.G1155E 0.48 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 148801286 148801286 G C ZNF425 Missense_Mutation p.C559W 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 149172261 149172261 G A ZNF746 Silent p.F384F 0.35 TCGA-YD-A9TA-06 7 149486276 149486276 G A SSPO RNA 0.43 TCGA-YD-A9TA-06 7 149502572 149502572 T A SSPO RNA 0.45 TCGA-YD-A9TA-06 7 149503975 149503975 C T SSPO RNA 0.40 TCGA-YD-A9TA-06 7 149524971 149524971 G A SSPO RNA 0.59 TCGA-YD-A9TA-06 7 149575865 149575865 C T ATP6V0E2 Intron 0.18 TCGA-YD-A9TA-06 7 150036096 150036096 G A RARRES2 Silent p.P118P 0.20 TCGA-YD-A9TA-06 7 150036097 150036097 G A RARRES2 Missense_Mutation p.P118L 0.20 tolerated(0.13) possibly_damaging(0.589) TCGA-YD-A9TA-06 7 150069982 150069982 C T REPIN1 Missense_Mutation p.T608I 0.32 deleterious(0.04) possibly_damaging(0.735) TCGA-YD-A9TA-06 7 150174565 150174565 C T GIMAP8 Silent p.T565T 0.51 TCGA-YD-A9TA-06 7 150269390 150269390 G A GIMAP4 Missense_Mutation p.E78K 0.21 tolerated(0.08) benign(0.063) TCGA-YD-A9TA-06 7 150327146 150327146 C T GIMAP6 Missense_Mutation p.G29S 0.43 deleterious(0.02) probably_damaging(0.916) TCGA-YD-A9TA-06 7 150389907 150389907 G A GIMAP2 Missense_Mutation p.R178Q 0.20 deleterious(0) probably_damaging(0.962) TCGA-YD-A9TA-06 7 150490208 150490208 C T TMEM176B Missense_Mutation p.E190K 0.33 tolerated(0.19) benign(0.133) TCGA-YD-A9TA-06 7 150554138 150554138 T G AOC1 Missense_Mutation p.S194A 0.20 tolerated(0.12) possibly_damaging(0.721) TCGA-YD-A9TA-06 7 150554715 150554715 C T AOC1 Missense_Mutation p.A386V 0.30 tolerated(0.63) benign(0.174) TCGA-YD-A9TA-06 7 150648872 150648872 G A KCNH2 Missense_Mutation p.R537W 0.28 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 150692319 150692319 C T NOS3 Missense_Mutation p.P63S 0.17 tolerated(1) probably_damaging(0.986) TCGA-YD-A9TA-06 7 150733247 150733247 C T ABCB8 Silent p.I367I 0.29 TCGA-YD-A9TA-06 7 150934850 150934850 C T CHPF2 Silent p.L468L 0.27 TCGA-YD-A9TA-06 7 150935384 150935384 C T CHPF2 Missense_Mutation p.P646S 0.64 tolerated(0.75) benign(0.286) TCGA-YD-A9TA-06 7 151292445 151292445 C A PRKAG2 Missense_Mutation p.D284Y 0.19 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 152497698 152497698 C T ACTR3B Silent p.F61F 0.16 TCGA-YD-A9TA-06 7 1536904 1536905 TA - INTS1 Frame_Shift_Del p.Y491Pfs*115 0.18 TCGA-YD-A9TA-06 7 1542818 1542818 G A INTS1 Missense_Mutation p.P23L 0.22 deleterious(0) benign(0.298) TCGA-YD-A9TA-06 7 1542819 1542819 G A INTS1 Missense_Mutation p.P23S 0.21 deleterious(0.02) possibly_damaging(0.636) TCGA-YD-A9TA-06 7 154862721 154862721 G A HTR5A Missense_Mutation p.V38I 0.64 tolerated(0.19) benign(0.012) TCGA-YD-A9TA-06 7 156755800 156755800 C T NOM1 Silent p.S614S 0.23 TCGA-YD-A9TA-06 7 157959916 157959916 G A PTPRN2 Missense_Mutation p.P206L 0.27 deleterious(0.04) probably_damaging(0.946) TCGA-YD-A9TA-06 7 18767361 18767361 C T HDAC9 Silent p.L630L 0.17 TCGA-YD-A9TA-06 7 18832987 18832987 G A HDAC9 Nonsense_Mutation p.W745* 0.38 TCGA-YD-A9TA-06 7 19015566 19015566 G A HDAC9 Missense_Mutation p.E1054K 0.43 tolerated(0.64) benign(0.007) TCGA-YD-A9TA-06 7 20180588 20180588 G A MACC1 Missense_Mutation p.S847F 0.32 deleterious(0) possibly_damaging(0.828) TCGA-YD-A9TA-06 7 20371410 20371410 G A ITGB8 5'UTR 0.60 TCGA-YD-A9TA-06 7 21603969 21603969 G A DNAH11 Missense_Mutation p.R383Q 0.50 benign(0.286) TCGA-YD-A9TA-06 7 21934562 21934562 G A DNAH11 Missense_Mutation p.V4339I 0.30 probably_damaging(0.98) TCGA-YD-A9TA-06 7 2311503 2311503 G A SNX8 Silent p.F174F 0.44 TCGA-YD-A9TA-06 7 23810695 23810695 G A STK31 Silent p.E595E 0.54 TCGA-YD-A9TA-06 7 2472472 2472472 C T CHST12 Silent p.V66V 0.53 TCGA-YD-A9TA-06 7 2577763 2577763 G A BRAT1 Silent p.L802L 0.60 TCGA-YD-A9TA-06 7 2953050 2953050 T G CARD11 Missense_Mutation p.S964R 0.29 deleterious(0.03) possibly_damaging(0.531) TCGA-YD-A9TA-06 7 2979406 2979406 G A CARD11 Nonsense_Mutation p.Q281* 0.53 TCGA-YD-A9TA-06 7 30094910 30094910 C T PLEKHA8 Missense_Mutation p.P331S 0.31 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 30536613 30536613 G A GGCT 3'UTR 0.47 TCGA-YD-A9TA-06 7 30656806 30656806 C T GARS Missense_Mutation p.P424L 0.32 deleterious(0.03) possibly_damaging(0.827) TCGA-YD-A9TA-06 7 30702365 30702365 G C CRHR2 Silent p.V241V 0.32 TCGA-YD-A9TA-06 7 30795310 30795310 C T INMT Missense_Mutation p.S212F 0.55 tolerated(0.19) benign(0.198) TCGA-YD-A9TA-06 7 30922549 30922549 C T FAM188B Silent p.T722T 0.46 TCGA-YD-A9TA-06 7 31018739 31018739 G A GHRHR Silent p.R384R 0.51 TCGA-YD-A9TA-06 7 31123845 31123845 G A ADCYAP1R1 Missense_Mutation p.E140K 0.50 tolerated(0.16) benign(0.14) TCGA-YD-A9TA-06 7 31146129 31146129 G A ADCYAP1R1 Missense_Mutation p.R441Q 0.23 deleterious(0) probably_damaging(0.97) TCGA-YD-A9TA-06 7 31614331 31614331 G A CCDC129 Missense_Mutation p.M217I 0.27 deleterious(0.04) possibly_damaging(0.58) TCGA-YD-A9TA-06 7 33397502 33397502 C T BBS9 Missense_Mutation p.P530S 0.43 deleterious(0) probably_damaging(0.988) TCGA-YD-A9TA-06 7 34125625 34125625 G A BMPER Missense_Mutation p.A556T 0.50 deleterious(0.01) probably_damaging(0.978) TCGA-YD-A9TA-06 7 35271165 35271165 G A TBX20 Missense_Mutation p.P281S 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 36588237 36588237 C T AOAH Missense_Mutation p.G372R 0.33 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 36633987 36633987 G A AOAH Missense_Mutation p.P299L 0.47 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 36895337 36895337 C T ELMO1 Missense_Mutation p.G668E 0.34 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 7 36917629 36917629 G A ELMO1 Missense_Mutation p.S603F 0.33 deleterious(0.01) benign(0.177) TCGA-YD-A9TA-06 7 37264550 37264550 C T ELMO1 Missense_Mutation p.S212N 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-YD-A9TA-06 7 37780115 37780115 C T GPR141 Silent p.F40F 0.35 TCGA-YD-A9TA-06 7 37927986 37927986 G T NME8 Missense_Mutation p.S452I 0.25 tolerated(0.09) possibly_damaging(0.689) TCGA-YD-A9TA-06 7 37947154 37947154 G A SFRP4 Missense_Mutation p.P323L 0.47 deleterious_low_confidence(0) benign(0.033) TCGA-YD-A9TA-06 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.38 tolerated(0.1) possibly_damaging(0.816) TCGA-YD-A9TA-06 7 38857459 38857459 G A VPS41 Silent p.F136F 0.37 TCGA-YD-A9TA-06 7 4308454 4308454 C T SDK1 3'UTR 0.24 TCGA-YD-A9TA-06 7 43484983 43484983 G A HECW1 Missense_Mutation p.D738N 0.40 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-YD-A9TA-06 7 43830904 43830904 C T BLVRA Missense_Mutation p.S64F 0.44 deleterious(0) possibly_damaging(0.828) TCGA-YD-A9TA-06 7 44179932 44179932 C T MYL7 Silent p.E96E 0.45 TCGA-YD-A9TA-06 7 45144593 45144593 G A TBRG4 Intron 0.50 TCGA-YD-A9TA-06 7 45725656 45725656 C T ADCY1 Silent p.P723P 0.50 TCGA-YD-A9TA-06 7 47317713 47317713 G A TNS3 Silent p.F1433F 0.35 TCGA-YD-A9TA-06 7 47814588 47814588 C T PKD1L1 3'UTR 0.46 TCGA-YD-A9TA-06 7 47925420 47925420 C T PKD1L1 Silent p.G1023G 0.33 TCGA-YD-A9TA-06 7 48046841 48046841 C T SUN3 Missense_Mutation p.R138K 0.33 tolerated(0.14) benign(0.022) TCGA-YD-A9TA-06 7 48081018 48081018 G A C7orf57 Missense_Mutation p.G48E 0.28 tolerated(0.3) benign(0.033) TCGA-YD-A9TA-06 7 48081061 48081061 G A C7orf57 Nonsense_Mutation p.W62* 0.25 TCGA-YD-A9TA-06 7 48269424 48269424 C T ABCA13 Missense_Mutation p.S212F 0.33 benign(0.063) TCGA-YD-A9TA-06 7 48312060 48312060 C T ABCA13 Missense_Mutation p.L933F 0.55 benign(0.092) TCGA-YD-A9TA-06 7 48450212 48450212 G C ABCA13 Missense_Mutation p.G4056R 0.38 probably_damaging(0.966) TCGA-YD-A9TA-06 7 48556408 48556408 C T ABCA13 Silent p.F4576F 0.36 TCGA-YD-A9TA-06 7 50097628 50097628 C A ZPBP Silent p.V148V 0.32 TCGA-YD-A9TA-06 7 50514206 50514206 A T FIGNL1 Missense_Mutation p.F260L 0.33 tolerated(0.16) benign(0.004) TCGA-YD-A9TA-06 7 51096349 51096349 G A COBL Missense_Mutation p.S815L 0.43 tolerated(0.41) benign(0) TCGA-YD-A9TA-06 7 51096790 51096790 G A COBL Missense_Mutation p.S668F 0.45 tolerated(0.29) possibly_damaging(0.51) TCGA-YD-A9TA-06 7 53103782 53103782 G A POM121L12 Missense_Mutation p.G140R 0.55 tolerated(0.25) benign(0.001) TCGA-YD-A9TA-06 7 54617635 54617635 G A VSTM2A Missense_Mutation p.E136K 0.30 tolerated(0.11) benign(0.43) TCGA-YD-A9TA-06 7 5568962 5568962 G A ACTB Missense_Mutation p.L65F 0.32 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-YD-A9TA-06 7 55914236 55914236 C T SEPT14 Missense_Mutation p.G50E 0.38 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 56122192 56122192 C T CCT6A Missense_Mutation p.S111F 0.30 deleterious(0.04) benign(0.395) TCGA-YD-A9TA-06 7 56174183 56174183 G A CHCHD2 5'UTR 0.41 TCGA-YD-A9TA-06 7 5643510 5643510 C T FSCN1 Silent p.F376F 0.33 TCGA-YD-A9TA-06 7 6012958 6012958 G A PMS2 3'UTR 0.44 TCGA-YD-A9TA-06 7 6013087 6013087 G A PMS2 Silent p.P844P 0.28 TCGA-YD-A9TA-06 7 6013088 6013088 G A PMS2 Missense_Mutation p.P844L 0.29 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 6022595 6022595 G A PMS2 Silent p.I678I 0.17 TCGA-YD-A9TA-06 7 65445369 65445369 G A GUSB Missense_Mutation p.P80S 0.32 deleterious(0) probably_damaging(0.923) TCGA-YD-A9TA-06 7 66104122 66104122 C T KCTD7 Missense_Mutation p.T258I 0.46 tolerated(0.17) benign(0.067) TCGA-YD-A9TA-06 7 66104123 66104123 C T KCTD7 Silent p.T258T 0.46 TCGA-YD-A9TA-06 7 70886086 70886086 C A WBSCR17 Silent p.P319P 0.59 TCGA-YD-A9TA-06 7 71036308 71036308 G A WBSCR17 Missense_Mutation p.R334K 0.51 deleterious(0.04) probably_damaging(0.973) TCGA-YD-A9TA-06 7 71142283 71142284 GG A WBSCR17 Frame_Shift_Del p.G498Nfs*64 0.16 TCGA-YD-A9TA-06 7 72400589 72400589 C T POM121 Silent p.I140I 0.43 TCGA-YD-A9TA-06 7 72413470 72413470 C T POM121 Missense_Mutation p.P715S 0.11 tolerated(0.23) benign(0.164) TCGA-YD-A9TA-06 7 72413471 72413471 C T POM121 Missense_Mutation p.P715L 0.10 tolerated(0.25) benign(0.009) TCGA-YD-A9TA-06 7 72419956 72419956 G A POM121 3'UTR 0.22 TCGA-YD-A9TA-06 7 72849456 72849456 C T FZD9 Silent p.I373I 0.50 TCGA-YD-A9TA-06 7 72849457 72849457 C T FZD9 Silent p.L374L 0.49 TCGA-YD-A9TA-06 7 73535224 73535224 C T LIMK1 Silent p.I542I 0.48 TCGA-YD-A9TA-06 7 73635032 73635032 A C LAT2 Splice_Site p.X101_splice 0.35 TCGA-YD-A9TA-06 7 73933803 73933803 C T GTF2IRD1 Missense_Mutation p.P256S 0.30 tolerated(0.31) benign(0.039) TCGA-YD-A9TA-06 7 74193761 74193761 G A NCF1 Missense_Mutation p.D130N 0.35 tolerated(0.17) benign(0.001) TCGA-YD-A9TA-06 7 75511286 75511286 C T RHBDD2 Silent p.F106F 0.15 TCGA-YD-A9TA-06 7 76054434 76054434 G A ZP3 Silent p.L51L 0.56 TCGA-YD-A9TA-06 7 76054505 76054505 C T ZP3 Missense_Mutation p.P75L 0.57 tolerated(0.07) possibly_damaging(0.603) TCGA-YD-A9TA-06 7 76109952 76109952 C T DTX2 Silent p.I42I 0.25 TCGA-YD-A9TA-06 7 76634918 76634918 C T UPK3B Intron 0.40 TCGA-YD-A9TA-06 7 76825826 76825826 C T FGL2 Missense_Mutation p.D364N 0.20 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 76916192 76916192 C T CCDC146 Silent p.F742F 0.55 TCGA-YD-A9TA-06 7 76978679 76978679 G A GSAP Missense_Mutation p.P512S 0.47 deleterious(0.04) probably_damaging(0.917) TCGA-YD-A9TA-06 7 76984941 76984941 G A GSAP Missense_Mutation p.P351S 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-YD-A9TA-06 7 77708281 77708281 C T MAGI2 Missense_Mutation p.G1230E 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 77885208 77885208 G A MAGI2 Intron 0.29 TCGA-YD-A9TA-06 7 77973193 77973193 C T MAGI2 Missense_Mutation p.G437E 0.55 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 78131070 78131070 G A MAGI2 Silent p.A263A 0.44 TCGA-YD-A9TA-06 7 8153619 8153619 G A ICA1 Silent p.L462L 0.53 TCGA-YD-A9TA-06 7 82390007 82390007 G A PCLO Missense_Mutation p.S5079L 0.56 unknown(0) TCGA-YD-A9TA-06 7 82544691 82544691 G A PCLO Missense_Mutation p.S4204L 0.44 unknown(0) TCGA-YD-A9TA-06 7 82545348 82545348 G A PCLO Missense_Mutation p.P3985L 0.24 unknown(0) TCGA-YD-A9TA-06 7 82579775 82579775 G A PCLO Nonsense_Mutation p.Q3377* 0.48 TCGA-YD-A9TA-06 7 82580632 82580632 G A PCLO Missense_Mutation p.S3091F 0.40 unknown(0) TCGA-YD-A9TA-06 7 82582365 82582365 G A PCLO Missense_Mutation p.S2635L 0.26 unknown(0) TCGA-YD-A9TA-06 7 82583255 82583255 G A PCLO Silent p.T2338T 0.30 TCGA-YD-A9TA-06 7 82595649 82595649 G A PCLO Missense_Mutation p.P1152L 0.26 unknown(0) TCGA-YD-A9TA-06 7 82595670 82595670 G A PCLO Missense_Mutation p.S1145F 0.53 unknown(0) TCGA-YD-A9TA-06 7 83277789 83277789 G A SEMA3E Missense_Mutation p.H24Y 0.55 deleterious(0.04) benign(0.002) TCGA-YD-A9TA-06 7 86522367 86522367 G A KIAA1324L Missense_Mutation p.S912F 0.17 deleterious(0) benign(0.017) TCGA-YD-A9TA-06 7 86526906 86526906 G A KIAA1324L Silent p.F867F 0.66 TCGA-YD-A9TA-06 7 87053297 87053297 G A ABCB4 Silent p.V712V 0.51 TCGA-YD-A9TA-06 7 87774488 87774488 G A ADAM22 Missense_Mutation p.E457K 0.49 deleterious(0.01) possibly_damaging(0.716) TCGA-YD-A9TA-06 7 8790668 8790668 A C NXPH1 Missense_Mutation p.K29Q 0.58 tolerated(0.45) benign(0.018) TCGA-YD-A9TA-06 7 88964765 88964765 G C ZNF804B Silent p.T823T 0.29 TCGA-YD-A9TA-06 7 89897680 89897680 C T C7orf63 Missense_Mutation p.P172S 0.12 tolerated(0.26) benign(0.011) TCGA-YD-A9TA-06 7 90741984 90741984 G T CDK14 Nonsense_Mutation p.E410* 0.17 TCGA-YD-A9TA-06 7 91674362 91674362 C T AKAP9 Missense_Mutation p.L1735F 0.27 probably_damaging(0.999) TCGA-YD-A9TA-06 7 91691662 91691662 C T AKAP9 Missense_Mutation p.R1947C 0.16 probably_damaging(0.927) TCGA-YD-A9TA-06 7 91843238 91843238 G A KRIT1 Missense_Mutation p.H596Y 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-YD-A9TA-06 7 92098177 92098177 T C ERVW-1 Missense_Mutation p.S507G 0.47 tolerated_low_confidence(0.44) benign(0) TCGA-YD-A9TA-06 7 92099199 92099199 C T ERVW-1 Missense_Mutation p.S166N 0.47 tolerated(0.37) possibly_damaging(0.481) TCGA-YD-A9TA-06 7 92130952 92130952 G A PEX1 Missense_Mutation p.L818F 0.47 deleterious(0.01) possibly_damaging(0.636) TCGA-YD-A9TA-06 7 92764234 92764234 C T SAMD9L Missense_Mutation p.D351N 0.47 tolerated(1) benign(0.045) TCGA-YD-A9TA-06 7 92970819 92970819 C T CCDC132 Silent p.H713H 0.21 TCGA-YD-A9TA-06 7 92985237 92985237 C T CCDC132 Missense_Mutation p.R874C 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 93108720 93108720 C A CALCR Missense_Mutation p.A69S 0.20 tolerated(0.15) possibly_damaging(0.797) TCGA-YD-A9TA-06 7 94174914 94174914 T C CASD1 Missense_Mutation p.Y512H 0.53 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 7 95216434 95216434 G A PDK4 Missense_Mutation p.A328V 0.38 deleterious(0.03) benign(0.034) TCGA-YD-A9TA-06 7 95616460 95616460 C T DYNC1I1 Missense_Mutation p.S296F 0.26 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 7 95726804 95726804 C T DYNC1I1 Missense_Mutation p.P613S 0.26 deleterious(0.02) benign(0.009) TCGA-YD-A9TA-06 7 97487634 97487634 C T ASNS Missense_Mutation p.A287T 0.54 tolerated(0.2) possibly_damaging(0.595) TCGA-YD-A9TA-06 7 98557092 98557092 C T TRRAP Silent p.F2149F 0.54 TCGA-YD-A9TA-06 7 99032576 99032576 G A ATP5J2-PTCD1 Missense_Mutation p.S146F 0.48 deleterious(0.03) probably_damaging(0.917) TCGA-YD-A9TA-06 7 99306740 99306740 C T CYP3A7 Missense_Mutation p.G391R 0.55 deleterious(0.01) possibly_damaging(0.9) TCGA-YD-A9TA-06 7 99699026 99699026 G A MCM7 5'UTR 0.31 TCGA-YD-A9TA-06 8 100155303 100155303 C T VPS13B Missense_Mutation p.R585C 0.16 tolerated(0.13) possibly_damaging(0.876) TCGA-YD-A9TA-06 8 100287350 100287350 C T VPS13B Missense_Mutation p.P898S 0.66 deleterious(0.01) probably_damaging(0.968) TCGA-YD-A9TA-06 8 100454816 100454816 C T VPS13B Missense_Mutation p.P1133L 0.18 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TA-06 8 100654144 100654144 G T VPS13B Missense_Mutation p.V1801F 0.16 deleterious(0.03) probably_damaging(0.954) TCGA-YD-A9TA-06 8 101076125 101076125 G A RGS22 Silent p.L291L 0.50 TCGA-YD-A9TA-06 8 101541950 101541950 G A ANKRD46 Missense_Mutation p.P38S 0.20 tolerated(0.61) possibly_damaging(0.876) TCGA-YD-A9TA-06 8 102381091 102381091 C T NACAP1 RNA 0.78 TCGA-YD-A9TA-06 8 103663517 103663517 G A KLF10 Missense_Mutation p.P348L 0.57 deleterious(0) probably_damaging(0.987) TCGA-YD-A9TA-06 8 10468017 10468017 G A RP1L1 Silent p.S1197S 0.72 TCGA-YD-A9TA-06 8 104778634 104778634 C T RIMS2 Silent p.F189F 0.17 TCGA-YD-A9TA-06 8 105510109 105510109 G A LRP12 Missense_Mutation p.S224F 0.19 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 8 10583298 10583298 C T SOX7 Missense_Mutation p.V425I 0.50 deleterious(0.02) possibly_damaging(0.716) TCGA-YD-A9TA-06 8 10755927 10755927 C T XKR6 Silent p.G487G 0.75 TCGA-YD-A9TA-06 8 10755928 10755928 C T XKR6 Missense_Mutation p.G487E 0.72 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 110099751 110099751 G A TRHR Missense_Mutation p.E4K 0.46 tolerated(0.91) benign(0.001) TCGA-YD-A9TA-06 8 110100126 110100126 C T TRHR Missense_Mutation p.H129Y 0.21 deleterious(0) probably_damaging(0.955) TCGA-YD-A9TA-06 8 110255399 110255399 A T NUDCD1 Missense_Mutation p.Y531N 0.50 tolerated(0.1) possibly_damaging(0.76) TCGA-YD-A9TA-06 8 110408339 110408339 G A PKHD1L1 Missense_Mutation p.D299N 0.77 tolerated(0.12) benign(0.057) TCGA-YD-A9TA-06 8 110437441 110437441 C T PKHD1L1 Missense_Mutation p.A942V 0.33 tolerated(0.52) possibly_damaging(0.843) TCGA-YD-A9TA-06 8 110457565 110457565 C T PKHD1L1 Silent p.L1823L 0.58 TCGA-YD-A9TA-06 8 110509274 110509274 G A PKHD1L1 Nonsense_Mutation p.W3485* 0.60 TCGA-YD-A9TA-06 8 110510763 110510763 G A PKHD1L1 Missense_Mutation p.E3558K 0.16 tolerated(0.37) benign(0.032) TCGA-YD-A9TA-06 8 110984701 110984701 G A KCNV1 Silent p.L259L 0.63 TCGA-YD-A9TA-06 8 113241012 113241012 C T CSMD3 Missense_Mutation p.G3646E 0.64 deleterious(0) probably_damaging(0.964) TCGA-YD-A9TA-06 8 113266489 113266489 C T CSMD3 Missense_Mutation p.G3368E 0.50 deleterious(0.01) benign(0.223) TCGA-YD-A9TA-06 8 117657305 117657305 G A EIF3H Silent p.F333F 0.42 TCGA-YD-A9TA-06 8 118184881 118184881 G A SLC30A8 Silent p.Q357Q 0.29 TCGA-YD-A9TA-06 8 119936588 119936588 G A TNFRSF11B 3'UTR 0.24 TCGA-YD-A9TA-06 8 120101919 120101919 G A COLEC10 Missense_Mutation p.G50E 0.50 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 120606049 120606049 C T ENPP2 Missense_Mutation p.G394R 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 120774810 120774810 G A TAF2 Silent p.A801A 0.19 TCGA-YD-A9TA-06 8 121293266 121293266 C T COL14A1 Silent p.L1264L 0.34 TCGA-YD-A9TA-06 8 121293267 121293267 C T COL14A1 Missense_Mutation p.H1265Y 0.35 deleterious(0) possibly_damaging(0.507) TCGA-YD-A9TA-06 8 121344407 121344407 G A COL14A1 Missense_Mutation p.G1563R 0.44 deleterious(0) possibly_damaging(0.851) TCGA-YD-A9TA-06 8 124195282 124195282 C T FAM83A Silent p.F62F 0.34 TCGA-YD-A9TA-06 8 124346514 124346514 G A ATAD2 Missense_Mutation p.A1087V 0.57 deleterious(0.02) benign(0.079) TCGA-YD-A9TA-06 8 124658156 124658156 G A KLHL38 Silent p.L523L 0.28 TCGA-YD-A9TA-06 8 124664063 124664063 G A KLHL38 Silent p.P368P 0.53 TCGA-YD-A9TA-06 8 124749571 124749571 C T ANXA13 Missense_Mutation p.G2S 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YD-A9TA-06 8 125076803 125076803 G A FER1L6 Missense_Mutation p.G1182R 0.36 tolerated(0.56) benign(0.002) TCGA-YD-A9TA-06 8 125575177 125575177 G A MTSS1 Missense_Mutation p.S294F 0.37 deleterious(0) probably_damaging(0.965) TCGA-YD-A9TA-06 8 12592883 12592883 G A LONRF1 Missense_Mutation p.P493L 0.62 tolerated(0.05) probably_damaging(1) TCGA-YD-A9TA-06 8 126071781 126071781 G A KIAA0196 Nonsense_Mutation p.Q509* 0.51 TCGA-YD-A9TA-06 8 128428675 128428675 G A POU5F1B Silent p.E188E 0.22 TCGA-YD-A9TA-06 8 128751219 128751219 C T MYC Silent p.P252P 0.67 TCGA-YD-A9TA-06 8 12947853 12947853 A C DLC1 Missense_Mutation p.C1328G 0.69 tolerated(0.26) possibly_damaging(0.643) TCGA-YD-A9TA-06 8 131073288 131073288 G A ASAP1 Missense_Mutation p.S910F 0.51 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 8 131104224 131104224 G A ASAP1 Missense_Mutation p.P856L 0.24 tolerated(0.12) benign(0.011) TCGA-YD-A9TA-06 8 131792722 131792722 G A ADCY8 Missense_Mutation p.H1224Y 0.45 deleterious_low_confidence(0) benign(0.001) TCGA-YD-A9TA-06 8 132052193 132052193 G A ADCY8 Silent p.F129F 0.25 TCGA-YD-A9TA-06 8 133044162 133044162 C T OC90 Missense_Mutation p.E333K 0.57 deleterious(0) probably_damaging(0.956) TCGA-YD-A9TA-06 8 133184869 133184869 C T KCNQ3 Silent p.R372R 0.28 TCGA-YD-A9TA-06 8 133906156 133906156 C T TG Missense_Mutation p.R995C 0.24 deleterious(0) possibly_damaging(0.847) TCGA-YD-A9TA-06 8 134108506 134108506 C T TG Silent p.F2487F 0.64 TCGA-YD-A9TA-06 8 139144974 139144974 T G FAM135B Missense_Mutation p.L1361F 0.64 tolerated(0.06) possibly_damaging(0.656) TCGA-YD-A9TA-06 8 139153476 139153476 C T FAM135B Missense_Mutation p.G1252E 0.53 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 8 139163459 139163459 C T FAM135B Missense_Mutation p.E1087K 0.24 tolerated(0.06) benign(0.097) TCGA-YD-A9TA-06 8 139165412 139165412 G A FAM135B Missense_Mutation p.P436S 0.13 tolerated(0.17) benign(0.014) TCGA-YD-A9TA-06 8 139635982 139635982 C T COL22A1 Missense_Mutation p.G1255E 0.61 unknown(0) TCGA-YD-A9TA-06 8 13965683 13965683 G A SGCZ Silent p.S203S 0.62 TCGA-YD-A9TA-06 8 140744306 140744306 G A TRAPPC9 Silent p.F1163F 0.57 TCGA-YD-A9TA-06 8 141381118 141381118 G A TRAPPC9 Silent p.L530L 0.24 TCGA-YD-A9TA-06 8 142229821 142229821 G A SLC45A4 Missense_Mutation p.R129C 0.33 deleterious(0) possibly_damaging(0.844) TCGA-YD-A9TA-06 8 142366917 142366917 G A GPR20 3'UTR 0.56 TCGA-YD-A9TA-06 8 142366920 142366920 C T GPR20 3'UTR 0.54 TCGA-YD-A9TA-06 8 143570427 143570427 C A BAI1 Silent p.G828G 0.53 TCGA-YD-A9TA-06 8 143955879 143955879 C T CYP11B1 Silent p.E474E 0.23 TCGA-YD-A9TA-06 8 143959213 143959213 G A CYP11B1 Intron 0.50 TCGA-YD-A9TA-06 8 143998540 143998540 C T CYP11B2 Silent p.R110R 0.25 TCGA-YD-A9TA-06 8 143999169 143999169 G A CYP11B2 Missense_Mutation p.R30W 0.28 deleterious(0.03) benign(0.39) TCGA-YD-A9TA-06 8 144398209 144398209 G A TOP1MT Missense_Mutation p.P473L 0.16 deleterious(0.03) benign(0.197) TCGA-YD-A9TA-06 8 144589967 144589967 G A ZC3H3 Missense_Mutation p.P555L 0.26 tolerated(0.09) benign(0.002) TCGA-YD-A9TA-06 8 144589968 144589968 G A ZC3H3 Missense_Mutation p.P555S 0.27 tolerated(0.6) benign(0.004) TCGA-YD-A9TA-06 8 144803963 144803963 C T MAPK15 Silent p.S457S 0.32 TCGA-YD-A9TA-06 8 144940350 144940350 G A EPPK1 Missense_Mutation p.P2358S 0.07 benign(0.323) TCGA-YD-A9TA-06 8 144943308 144943308 C T EPPK1 Missense_Mutation p.V1372M 0.75 probably_damaging(1) TCGA-YD-A9TA-06 8 145107910 145107910 G A OPLAH Silent p.L998L 0.42 TCGA-YD-A9TA-06 8 145111302 145111302 G A OPLAH Missense_Mutation p.P657S 0.53 tolerated(0.17) benign(0.091) TCGA-YD-A9TA-06 8 145545016 145545016 G A DGAT1 Missense_Mutation p.R86C 0.25 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 8 145545017 145545017 G A DGAT1 Silent p.Y85Y 0.25 TCGA-YD-A9TA-06 8 145584569 145584569 C T SLC52A2 Missense_Mutation p.A411V 0.19 tolerated(0.83) benign(0.056) TCGA-YD-A9TA-06 8 145584570 145584570 C T SLC52A2 Silent p.A411A 0.19 TCGA-YD-A9TA-06 8 145698760 145698760 C T KIFC2 Missense_Mutation p.A815V 0.50 deleterious_low_confidence(0.03) benign(0) TCGA-YD-A9TA-06 8 146279573 146279573 C T C8orf33 3'UTR 0.23 TCGA-YD-A9TA-06 8 146279574 146279574 C T C8orf33 3'UTR 0.24 TCGA-YD-A9TA-06 8 15998350 15998350 G A MSR1 Intron 0.82 TCGA-YD-A9TA-06 8 16026294 16026294 T C MSR1 Silent p.G101G 0.62 TCGA-YD-A9TA-06 8 17065554 17065554 T G ZDHHC2 Missense_Mutation p.L228R 0.82 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 17830023 17830023 C T PCM1 Missense_Mutation p.S1257L 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 8 21890688 21890688 C T NPM2 Silent p.L106L 0.67 TCGA-YD-A9TA-06 8 22138637 22138637 C T PIWIL2 Missense_Mutation p.S68F 0.56 deleterious_low_confidence(0.04) benign(0.332) TCGA-YD-A9TA-06 8 23112781 23112781 C T CHMP7 Missense_Mutation p.R165C 0.67 deleterious(0.01) possibly_damaging(0.54) TCGA-YD-A9TA-06 8 23174583 23174583 G A LOXL2 Silent p.V505V 0.58 TCGA-YD-A9TA-06 8 23538892 23538893 - CTTTCGCTTAGT NKX3-1 In_Frame_Ins p.T179_K182dup 0.19 TCGA-YD-A9TA-06 8 24178779 24178779 G C ADAM28 Missense_Mutation p.E233Q 0.30 deleterious(0.04) probably_damaging(0.982) TCGA-YD-A9TA-06 8 24342807 24342807 C T ADAM7 Missense_Mutation p.S298L 0.58 deleterious(0.04) benign(0.012) TCGA-YD-A9TA-06 8 25226084 25226084 C T DOCK5 Intron 0.54 TCGA-YD-A9TA-06 8 25718726 25718726 C T EBF2 Missense_Mutation p.R394Q 0.79 deleterious(0.01) possibly_damaging(0.76) TCGA-YD-A9TA-06 8 3000029 3000029 C T CSMD1 Missense_Mutation p.D2067N 0.87 probably_damaging(0.999) TCGA-YD-A9TA-06 8 30704785 30704785 G A TEX15 Silent p.S583S 0.70 TCGA-YD-A9TA-06 8 3081286 3081286 C T CSMD1 Silent p.V1483V 0.69 TCGA-YD-A9TA-06 8 3224756 3224756 G A CSMD1 Silent p.I971I 0.58 TCGA-YD-A9TA-06 8 36675270 36675270 C T KCNU1 Silent p.F366F 0.63 TCGA-YD-A9TA-06 8 39091502 39091502 C T ADAM32 Silent p.F573F 0.50 TCGA-YD-A9TA-06 8 39564357 39564357 C T ADAM18 Missense_Mutation p.P651S 0.71 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 8 39627054 39627054 C T ADAM2 Missense_Mutation p.E357K 0.67 tolerated(0.16) benign(0.069) TCGA-YD-A9TA-06 8 40011356 40011356 C T C8orf4 Missense_Mutation p.S102F 0.63 tolerated_low_confidence(0.26) probably_damaging(0.992) TCGA-YD-A9TA-06 8 41504751 41504751 C T NKX6-3 Missense_Mutation p.E42K 0.45 tolerated_low_confidence(0.26) benign(0.003) TCGA-YD-A9TA-06 8 41577265 41577265 G A ANK1 Missense_Mutation p.P374S 0.75 tolerated(0.1) probably_damaging(0.999) TCGA-YD-A9TA-06 8 41584854 41584854 G A ANK1 Missense_Mutation p.P147S 0.65 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 41906003 41906003 G C KAT6A Missense_Mutation p.P165A 0.27 possibly_damaging(0.876) TCGA-YD-A9TA-06 8 42297066 42297066 G A SLC20A2 Missense_Mutation p.A279V 0.64 tolerated(0.32) benign(0.054) TCGA-YD-A9TA-06 8 43033322 43033322 C T HGSNAT Silent p.F319F 0.63 TCGA-YD-A9TA-06 8 43147647 43147647 C T POTEA RNA 0.10 TCGA-YD-A9TA-06 8 48697730 48697730 G A PRKDC Missense_Mutation p.S3683L 0.38 probably_damaging(0.987) TCGA-YD-A9TA-06 8 48878917 48878917 C T MCM4 Missense_Mutation p.H335Y 0.29 tolerated(0.32) benign(0.013) TCGA-YD-A9TA-06 8 49987823 49987823 C T C8orf22 3'UTR 0.46 TCGA-YD-A9TA-06 8 52320737 52320737 C T PXDNL Silent p.G1149G 0.33 TCGA-YD-A9TA-06 8 53853409 53853409 C T NPBWR1 Silent p.F314F 0.45 TCGA-YD-A9TA-06 8 54141757 54141757 C T OPRK1 3'UTR 0.36 TCGA-YD-A9TA-06 8 54141997 54141997 C T OPRK1 Missense_Mutation p.E335K 0.24 deleterious(0.01) benign(0.334) TCGA-YD-A9TA-06 8 55533768 55533768 G A RP1 Missense_Mutation p.R81K 0.42 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 8 55539737 55539737 C T RP1 Missense_Mutation p.H1099Y 0.51 deleterious(0.05) possibly_damaging(0.55) TCGA-YD-A9TA-06 8 55541525 55541525 G A RP1 Missense_Mutation p.E1695K 0.38 tolerated(0.28) benign(0.009) TCGA-YD-A9TA-06 8 55541960 55541960 G A RP1 Missense_Mutation p.E1840K 0.31 tolerated(1) benign(0) TCGA-YD-A9TA-06 8 56436516 56436516 G A XKR4 Silent p.Q561Q 0.44 TCGA-YD-A9TA-06 8 57026063 57026063 C T MOS Missense_Mutation p.G160E 0.40 tolerated(0.73) benign(0.004) TCGA-YD-A9TA-06 8 57354001 57354001 C T PENK Missense_Mutation p.G212S 0.51 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 59851972 59851972 C T TOX Missense_Mutation p.M100I 0.51 deleterious(0.05) benign(0) TCGA-YD-A9TA-06 8 67505427 67505427 G A MYBL1 Silent p.I230I 0.75 TCGA-YD-A9TA-06 8 67763067 67763067 T C SGK3 Missense_Mutation p.L411P 0.24 tolerated(0.26) benign(0.438) TCGA-YD-A9TA-06 8 67925240 67925240 G A PPP1R42 Missense_Mutation p.L130F 0.26 tolerated(0.71) benign(0.005) TCGA-YD-A9TA-06 8 68396959 68396959 G A CPA6 Silent p.I234I 0.23 TCGA-YD-A9TA-06 8 68419113 68419113 C T CPA6 Missense_Mutation p.R182Q 0.54 tolerated(0.41) possibly_damaging(0.613) TCGA-YD-A9TA-06 8 70488396 70488396 G C SULF1 Missense_Mutation p.E122Q 0.35 deleterious(0.02) possibly_damaging(0.67) TCGA-YD-A9TA-06 8 70550877 70550877 C T SULF1 Nonsense_Mutation p.Q809* 0.14 TCGA-YD-A9TA-06 8 70978703 70978703 C T PRDM14 Missense_Mutation p.G317E 0.48 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 8 71646458 71646458 T C XKR9 Silent p.V307V 0.34 TCGA-YD-A9TA-06 8 74005088 74005088 C T SBSPON Splice_Site p.X72_splice 0.67 TCGA-YD-A9TA-06 8 74005089 74005089 C T SBSPON Missense_Mutation p.A72T 0.67 deleterious(0.01) probably_damaging(0.957) TCGA-YD-A9TA-06 8 74205865 74205865 G A RPL7 5'UTR 0.42 TCGA-YD-A9TA-06 8 74585419 74585419 G A STAU2 Silent p.A111A 0.57 TCGA-YD-A9TA-06 8 74939045 74939045 C T LY96 Missense_Mutation p.S118L 0.15 tolerated(0.09) benign(0.102) TCGA-YD-A9TA-06 8 77761783 77761783 G C ZFHX4 Missense_Mutation p.R1227S 0.52 benign(0.402) TCGA-YD-A9TA-06 8 77765526 77765526 C T ZFHX4 Silent p.F2123F 0.36 TCGA-YD-A9TA-06 8 77767582 77767582 G A ZFHX4 Missense_Mutation p.A2809T 0.43 probably_damaging(0.991) TCGA-YD-A9TA-06 8 79648763 79648763 C T IL7 Splice_Site p.X121_splice 0.36 TCGA-YD-A9TA-06 8 86027489 86027489 C T LRRCC1 Silent p.P233P 0.16 TCGA-YD-A9TA-06 8 86050637 86050637 G C LRRCC1 Missense_Mutation p.E923Q 0.54 tolerated(0.86) benign(0.005) TCGA-YD-A9TA-06 8 90967729 90967729 G A NBN Silent p.F393F 0.45 TCGA-YD-A9TA-06 8 91072335 91072335 C T CALB1 3'UTR 0.65 TCGA-YD-A9TA-06 8 95683731 95683731 C T ESRP1 Silent p.P428P 0.12 TCGA-YD-A9TA-06 8 95862280 95862280 C T INTS8 Silent p.L490L 0.56 TCGA-YD-A9TA-06 8 97256153 97256153 G A MTERFD1 Silent p.F351F 0.55 TCGA-YD-A9TA-06 8 99054365 99054365 G A RPL30 Intron 0.59 TCGA-YD-A9TA-06 8 99101588 99101588 C T C8orf47 Missense_Mutation p.P115S 0.08 tolerated(0.21) benign(0.056) TCGA-YD-A9TA-06 8 99146777 99146777 C T POP1 Missense_Mutation p.P301S 0.65 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 101831989 101831989 C T COL15A1 Missense_Mutation p.H1330Y 0.81 tolerated(0.52) benign(0.208) TCGA-YD-A9TA-06 9 101984094 101984094 C G ALG2 Missense_Mutation p.G28A 0.22 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 9 101984095 101984095 C T ALG2 Missense_Mutation p.G28S 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 104356750 104356750 C T PPP3R2 Missense_Mutation p.E155K 0.61 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 104432549 104432549 G C GRIN3A Silent p.S715S 0.74 TCGA-YD-A9TA-06 9 104432554 104432554 A G GRIN3A Missense_Mutation p.F714L 0.74 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TA-06 9 107360970 107360970 G A OR13C5 Missense_Mutation p.S242L 0.87 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 9 107367231 107367231 G A OR13C2 Silent p.F226F 0.90 TCGA-YD-A9TA-06 9 107380251 107380251 G A OR13C9 Missense_Mutation p.P79S 0.88 deleterious(0.01) benign(0.099) TCGA-YD-A9TA-06 9 111625344 111625344 G A ACTL7A Missense_Mutation p.D248N 0.78 deleterious(0.03) possibly_damaging(0.521) TCGA-YD-A9TA-06 9 111849604 111849604 A C TMEM245 Missense_Mutation p.L390R 0.17 deleterious(0) possibly_damaging(0.851) TCGA-YD-A9TA-06 9 111945066 111945066 G A EPB41L4B Silent p.F810F 0.86 TCGA-YD-A9TA-06 9 112153809 112153809 G A PTPN3 Silent p.I662I 0.79 TCGA-YD-A9TA-06 9 112219466 112219466 C T PTPN3 Silent p.R92R 0.91 TCGA-YD-A9TA-06 9 112963559 112963559 G A C9orf152 Missense_Mutation p.S130F 0.82 tolerated(1) benign(0) TCGA-YD-A9TA-06 9 113563038 113563038 G A MUSK Missense_Mutation p.E794K 0.77 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 9 114134822 114134822 G A KIAA0368 Missense_Mutation p.A1650V 0.77 deleterious(0.02) possibly_damaging(0.62) TCGA-YD-A9TA-06 9 114151928 114151928 G A KIAA0368 Missense_Mutation p.P1297S 0.78 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 114695157 114695157 C T UGCG Silent p.I355I 0.80 TCGA-YD-A9TA-06 9 115759828 115759828 C T ZNF883 RNA 0.23 TCGA-YD-A9TA-06 9 115805518 115805518 G A ZFP37 Silent p.P460P 0.78 TCGA-YD-A9TA-06 9 115805519 115805519 G A ZFP37 Missense_Mutation p.P460L 0.76 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 9 115806380 115806380 C T ZFP37 Missense_Mutation p.R173K 0.11 tolerated(1) benign(0) TCGA-YD-A9TA-06 9 116345859 116345859 C T RGS3 Missense_Mutation p.P723S 0.89 tolerated_low_confidence(0.12) benign(0.017) TCGA-YD-A9TA-06 9 116838978 116838978 G A AMBP Missense_Mutation p.P54S 0.16 deleterious(0.03) benign(0.063) TCGA-YD-A9TA-06 9 117071592 117071592 C T COL27A1 Missense_Mutation p.S1757F 0.13 unknown(0) TCGA-YD-A9TA-06 9 117071593 117071593 C T COL27A1 Silent p.S1757S 0.13 TCGA-YD-A9TA-06 9 117108267 117108267 G A AKNA Silent p.S1179S 0.82 TCGA-YD-A9TA-06 9 117692442 117692442 G A TNFSF8 Silent p.L48L 0.78 TCGA-YD-A9TA-06 9 117792609 117792609 G A TNC Missense_Mutation p.T1999I 0.84 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 117804526 117804526 G T TNC Missense_Mutation p.F1740L 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-YD-A9TA-06 9 118974184 118974184 C T PAPPA Missense_Mutation p.P631S 0.55 deleterious(0) possibly_damaging(0.876) TCGA-YD-A9TA-06 9 120475271 120475271 C T TLR4 Nonsense_Mutation p.R289* 0.16 TCGA-YD-A9TA-06 9 120476546 120476546 C T TLR4 Missense_Mutation p.P714S 0.22 deleterious(0.01) probably_damaging(1) TCGA-YD-A9TA-06 9 121929878 121929878 G A BRINP1 Silent p.I590I 0.85 TCGA-YD-A9TA-06 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.78 tolerated(0.12) benign(0.004) TCGA-YD-A9TA-06 9 125330594 125330594 G A OR1L8 Missense_Mutation p.H55Y 0.86 tolerated(0.05) benign(0.105) TCGA-YD-A9TA-06 9 125330595 125330595 G A OR1L8 Silent p.P54P 0.86 TCGA-YD-A9TA-06 9 125424050 125424050 C T OR1L1 Missense_Mutation p.S19F 0.85 deleterious(0.01) possibly_damaging(0.862) TCGA-YD-A9TA-06 9 125437972 125437972 C T OR1L3 Silent p.S188S 0.64 TCGA-YD-A9TA-06 9 125438371 125438371 C T OR1L3 Silent p.I321I 0.71 TCGA-YD-A9TA-06 9 126136876 126136876 G A CRB2 Silent p.K1136K 0.72 TCGA-YD-A9TA-06 9 126783476 126783476 C T LHX2 Missense_Mutation p.H276Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-YD-A9TA-06 9 129455807 129455807 G A LMX1B Missense_Mutation p.R249Q 0.80 deleterious(0) probably_damaging(0.995) TCGA-YD-A9TA-06 9 130100411 130100411 G A GARNL3 Silent p.V333V 0.82 TCGA-YD-A9TA-06 9 130571968 130571968 C T FPGS Missense_Mutation p.R356W 0.88 deleterious(0.01) benign(0.154) TCGA-YD-A9TA-06 9 130864714 130864714 C T SLC25A25 Missense_Mutation p.P181L 0.60 deleterious(0) possibly_damaging(0.814) TCGA-YD-A9TA-06 9 131477476 131477476 C T PKN3 Missense_Mutation p.R560C 0.68 deleterious(0.03) benign(0.037) TCGA-YD-A9TA-06 9 131743614 131743614 C T NUP188 Silent p.S487S 0.56 TCGA-YD-A9TA-06 9 131743615 131743615 C T NUP188 Missense_Mutation p.H488Y 0.56 tolerated(0.09) possibly_damaging(0.74) TCGA-YD-A9TA-06 9 132985369 132985369 C T NCS1 Silent p.T135T 0.14 TCGA-YD-A9TA-06 9 134814806 134814806 G A MED27 Missense_Mutation p.H179Y 0.20 deleterious(0.04) benign(0.024) TCGA-YD-A9TA-06 9 135493822 135493822 G C DDX31 Missense_Mutation p.H679D 0.21 tolerated(0.24) benign(0.002) TCGA-YD-A9TA-06 9 135559054 135559054 C T GTF3C4 Silent p.V763V 0.52 TCGA-YD-A9TA-06 9 136221740 136221740 G A SURF1 Missense_Mutation p.S60F 0.16 deleterious(0.02) possibly_damaging(0.668) TCGA-YD-A9TA-06 9 136522364 136522364 G A DBH Intron 0.75 TCGA-YD-A9TA-06 9 136568091 136568091 G A SARDH Missense_Mutation p.R539C 0.80 tolerated(0.13) benign(0.302) TCGA-YD-A9TA-06 9 137710709 137710709 C T COL5A1 Missense_Mutation p.P1452S 0.21 unknown(0) TCGA-YD-A9TA-06 9 138377930 138377930 G A PPP1R26 Missense_Mutation p.S525N 0.68 deleterious(0.02) possibly_damaging(0.682) TCGA-YD-A9TA-06 9 138415144 138415144 G A LCN1 Silent p.T96T 0.38 TCGA-YD-A9TA-06 9 138415145 138415145 G A LCN1 Missense_Mutation p.A97T 0.42 tolerated(0.18) possibly_damaging(0.787) TCGA-YD-A9TA-06 9 138438731 138438731 G A OBP2A Silent p.G60G 0.12 TCGA-YD-A9TA-06 9 138586143 138586143 C T SOHLH1 Intron 0.91 TCGA-YD-A9TA-06 9 138649178 138649178 C T KCNT1 Missense_Mutation p.P237L 0.77 deleterious(0) probably_damaging(0.961) TCGA-YD-A9TA-06 9 140128872 140128872 C T SLC34A3 Silent p.F366F 0.62 TCGA-YD-A9TA-06 9 140707873 140707873 C T EHMT1 Missense_Mutation p.P1024L 0.81 deleterious(0) probably_damaging(0.931) TCGA-YD-A9TA-06 9 14805029 14805029 G A FREM1 Silent p.S1132S 0.55 TCGA-YD-A9TA-06 9 14851415 14851415 G A FREM1 Missense_Mutation p.P340L 0.42 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 9 14851416 14851416 G A FREM1 Missense_Mutation p.P340S 0.44 deleterious(0) probably_damaging(0.927) TCGA-YD-A9TA-06 9 18777217 18777217 A C ADAMTSL1 Missense_Mutation p.H997P 0.69 tolerated(0.1) benign(0.229) TCGA-YD-A9TA-06 9 20866997 20866997 C T FOCAD Missense_Mutation p.H726Y 0.84 deleterious(0) possibly_damaging(0.905) TCGA-YD-A9TA-06 9 21367620 21367620 C T IFNA13 Silent p.V130V 0.31 TCGA-YD-A9TA-06 9 21385398 21385398 G A IFNA2 5'Flank 0.75 TCGA-YD-A9TA-06 9 21440893 21440893 G A IFNA1 Silent p.V129V 0.52 TCGA-YD-A9TA-06 9 32633787 32633787 C T TAF1L Silent p.Q597Q 0.74 TCGA-YD-A9TA-06 9 33255187 33255187 C T BAG1 3'UTR 0.72 TCGA-YD-A9TA-06 9 33303250 33303250 C T NFX1 Silent p.T418T 0.75 TCGA-YD-A9TA-06 9 34622401 34622401 G A ARID3C Missense_Mutation p.P331S 0.87 tolerated(0.44) benign(0.032) TCGA-YD-A9TA-06 9 35092159 35092159 G A PIGO Silent p.F575F 0.89 TCGA-YD-A9TA-06 9 35681059 35681059 G A CA9 3'UTR 0.89 TCGA-YD-A9TA-06 9 35869570 35869570 G A OR13J1 Missense_Mutation p.L277F 0.85 tolerated(1) benign(0.2) TCGA-YD-A9TA-06 9 36171190 36171190 C T CCIN Missense_Mutation p.A564V 0.85 deleterious(0.01) benign(0.26) TCGA-YD-A9TA-06 9 67968264 67968264 C T ANKRD20A1 Missense_Mutation p.S608F 0.26 deleterious(0) benign(0.065) TCGA-YD-A9TA-06 9 71002416 71002416 C T PGM5 Silent p.L203L 0.63 TCGA-YD-A9TA-06 9 71668169 71668169 C T FXN Missense_Mutation p.S126F 0.68 deleterious(0) probably_damaging(0.984) TCGA-YD-A9TA-06 9 72067161 72067161 G A APBA1 Silent p.F615F 0.60 TCGA-YD-A9TA-06 9 75773663 75773663 C T ANXA1 Missense_Mutation p.P40L 0.79 deleterious(0.02) benign(0.073) TCGA-YD-A9TA-06 9 77300638 77300638 G A RORB 3'UTR 0.80 TCGA-YD-A9TA-06 9 78799592 78799592 A C PCSK5 Missense_Mutation p.K734T 0.76 tolerated(0.2) probably_damaging(0.946) TCGA-YD-A9TA-06 9 78804035 78804035 C T PCSK5 Silent p.N802N 0.45 TCGA-YD-A9TA-06 9 79318288 79318288 G A PRUNE2 Silent p.F2747F 0.79 TCGA-YD-A9TA-06 9 8518137 8518137 G A PTPRD Silent p.S418S 0.52 TCGA-YD-A9TA-06 9 86004624 86004624 C T FRMD3 Splice_Site p.X50_splice 0.57 TCGA-YD-A9TA-06 9 86414223 86414223 C T GKAP1 Silent p.K79K 0.44 TCGA-YD-A9TA-06 9 86616388 86616388 C T RMI1 Missense_Mutation p.P163S 0.24 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TA-06 9 88842858 88842858 C T C9orf153 Missense_Mutation p.E52K 0.26 deleterious(0.03) possibly_damaging(0.81) TCGA-YD-A9TA-06 9 94489021 94489021 G A ROR2 Silent p.P396P 0.12 TCGA-YD-A9TA-06 9 95033876 95033876 G A IARS Missense_Mutation p.P351L 0.85 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 9 95784658 95784658 C T FGD3 Missense_Mutation p.S515L 0.69 tolerated(0.28) benign(0.023) TCGA-YD-A9TA-06 9 97555198 97555198 C T C9orf3 Silent p.F372F 0.24 TCGA-YD-A9TA-06 9 98011451 98011451 G A FANCC Silent p.F41F 0.87 TCGA-YD-A9TA-06 9 990578 990578 G A DMRT3 Missense_Mutation p.G331E 0.54 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YD-A9TA-06 9 99697712 99697712 G A NUTM2G Silent p.R272R 0.80 TCGA-YD-A9TA-06 X 100086590 100086590 C T CSTF2 Missense_Mutation p.P326S 0.76 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TA-06 X 100105285 100105285 G A NOX1 Missense_Mutation p.P330S 0.84 tolerated(0.07) probably_damaging(1) TCGA-YD-A9TA-06 X 100169762 100169762 C A XKRX Silent p.R305R 0.85 TCGA-YD-A9TA-06 X 100401190 100401190 C T CENPI Missense_Mutation p.P584S 0.90 deleterious(0.01) possibly_damaging(0.621) TCGA-YD-A9TA-06 X 100531095 100531095 C T TAF7L Missense_Mutation p.E393K 0.87 tolerated(0.22) benign(0.025) TCGA-YD-A9TA-06 X 100531096 100531096 C A TAF7L Missense_Mutation p.M392I 0.88 deleterious(0.03) benign(0.118) TCGA-YD-A9TA-06 X 101576780 101576780 C T NXF2 Missense_Mutation p.P426S 0.35 tolerated(0.09) benign(0.326) TCGA-YD-A9TA-06 X 101615492 101615492 G A NXF2B 3'UTR 0.32 TCGA-YD-A9TA-06 X 106186193 106186193 G A MORC4 Missense_Mutation p.S643L 0.79 deleterious(0.01) benign(0.044) TCGA-YD-A9TA-06 X 106219908 106219908 G A MORC4 Missense_Mutation p.R355C 0.88 tolerated(0.31) benign(0.001) TCGA-YD-A9TA-06 X 107224429 107224429 G A TEX13B Missense_Mutation p.H274Y 0.83 tolerated(0.05) benign(0.01) TCGA-YD-A9TA-06 X 107400442 107400442 C T COL4A6 Missense_Mutation p.G1622S 0.79 benign(0.091) TCGA-YD-A9TA-06 X 107420158 107420158 G C COL4A6 Missense_Mutation p.L868V 0.81 possibly_damaging(0.898) TCGA-YD-A9TA-06 X 107834422 107834422 C T COL4A5 Missense_Mutation p.P434S 0.81 unknown(0) TCGA-YD-A9TA-06 X 107924162 107924162 G A COL4A5 Missense_Mutation p.E1355K 0.81 benign(0.327) TCGA-YD-A9TA-06 X 108635187 108635187 G A GUCY2F Silent p.L912L 0.72 TCGA-YD-A9TA-06 X 109694934 109694934 G A RGAG1 Silent p.T363T 0.77 TCGA-YD-A9TA-06 X 109696687 109696687 G A RGAG1 Missense_Mutation p.G948R 0.80 tolerated(0.12) possibly_damaging(0.876) TCGA-YD-A9TA-06 X 109931973 109931973 C T CHRDL1 Silent p.R279R 0.81 TCGA-YD-A9TA-06 X 110644255 110644255 C T DCX Missense_Mutation p.G304E 0.75 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 X 114357142 114357142 C T LRCH2 Missense_Mutation p.R709Q 0.68 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 X 115304175 115304175 G A AGTR2 Missense_Mutation p.M214I 0.64 tolerated(0.07) benign(0.178) TCGA-YD-A9TA-06 X 115304386 115304386 G A AGTR2 Missense_Mutation p.G285S 0.70 tolerated(0.51) benign(0.156) TCGA-YD-A9TA-06 X 117033150 117033150 G A KLHL13 Silent p.I566I 0.83 TCGA-YD-A9TA-06 X 118223556 118223556 C T KIAA1210 Missense_Mutation p.G546E 0.84 tolerated(0.54) benign(0.248) TCGA-YD-A9TA-06 X 123695634 123695634 C T TENM1 Missense_Mutation p.R774Q 0.84 tolerated(0.28) benign(0.014) TCGA-YD-A9TA-06 X 12516837 12516837 G A FRMPD4 Missense_Mutation p.G27E 0.78 tolerated(0.15) possibly_damaging(0.697) TCGA-YD-A9TA-06 X 127186211 127186211 C T ACTRT1 5'UTR 0.80 TCGA-YD-A9TA-06 X 12735656 12735656 C T FRMPD4 Missense_Mutation p.S904L 0.65 deleterious(0.02) benign(0.152) TCGA-YD-A9TA-06 X 129200643 129200643 G A ELF4 3'UTR 0.81 TCGA-YD-A9TA-06 X 130413314 130413314 C T IGSF1 Missense_Mutation p.E550K 0.78 tolerated(0.12) benign(0.008) TCGA-YD-A9TA-06 X 13057946 13057946 C T FAM9C Missense_Mutation p.G140E 0.67 tolerated(1) probably_damaging(0.993) TCGA-YD-A9TA-06 X 131211941 131211941 C T FRMD7 Missense_Mutation p.D702N 0.74 tolerated(0.21) possibly_damaging(0.627) TCGA-YD-A9TA-06 X 131228111 131228111 C A FRMD7 Missense_Mutation p.S114I 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 X 135314079 135314079 G A MAP7D3 Missense_Mutation p.S346L 0.73 tolerated(0.61) benign(0.034) TCGA-YD-A9TA-06 X 135427903 135427903 G A GPR112 Missense_Mutation p.E680K 0.73 tolerated(0.18) benign(0.056) TCGA-YD-A9TA-06 X 135431325 135431325 C T GPR112 Silent p.Y1820Y 0.71 TCGA-YD-A9TA-06 X 135432376 135432376 C T GPR112 Missense_Mutation p.P2171S 0.77 tolerated(0.26) benign(0.023) TCGA-YD-A9TA-06 X 13651119 13651119 G A EGFL6 Missense_Mutation p.E524K 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TA-06 X 140785660 140785660 C T SPANXD Missense_Mutation p.E86K 0.74 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-YD-A9TA-06 X 140995253 140995253 C T MAGEC1 Missense_Mutation p.S688F 0.84 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-YD-A9TA-06 X 140996264 140996264 G A MAGEC1 Missense_Mutation p.G1025E 0.75 deleterious(0.04) unknown(0) TCGA-YD-A9TA-06 X 141290724 141290724 G A MAGEC2 Silent p.T350T 0.72 TCGA-YD-A9TA-06 X 142605181 142605181 C T SPANXN3 Silent p.T13T 0.80 TCGA-YD-A9TA-06 X 144905589 144905589 C T SLITRK2 Missense_Mutation p.S549F 0.76 deleterious(0.01) benign(0.106) TCGA-YD-A9TA-06 X 148797991 148797991 T G MAGEA11 Missense_Mutation p.V282G 0.45 deleterious(0.01) benign(0.427) TCGA-YD-A9TA-06 X 149764983 149764983 C T MTM1 Nonsense_Mutation p.R29* 0.82 TCGA-YD-A9TA-06 X 150911884 150911884 G A CNGA2 Silent p.G303G 0.79 TCGA-YD-A9TA-06 X 151128149 151128149 C T GABRE Intron 0.82 TCGA-YD-A9TA-06 X 151303640 151303640 C T MAGEA10 Missense_Mutation p.M151I 0.77 tolerated(0.1) benign(0.032) TCGA-YD-A9TA-06 X 151869720 151869720 G A MAGEA6 Missense_Mutation p.G137E 0.77 tolerated(1) benign(0.004) TCGA-YD-A9TA-06 X 151900072 151900072 C T MAGEA12 Silent p.R243R 0.76 TCGA-YD-A9TA-06 X 152612815 152612815 C T ZNF275 Silent p.L224L 0.72 TCGA-YD-A9TA-06 X 153135665 153135665 G A L1CAM Silent p.P279P 0.80 TCGA-YD-A9TA-06 X 153278801 153278801 G A IRAK1 Silent p.S541S 0.75 TCGA-YD-A9TA-06 X 153278802 153278802 G A IRAK1 Missense_Mutation p.S541F 0.75 deleterious(0.04) benign(0.071) TCGA-YD-A9TA-06 X 153696487 153696487 C T PLXNA3 Missense_Mutation p.P1295S 0.79 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TA-06 X 153763551 153763551 G A G6PD Missense_Mutation p.S136F 0.64 tolerated(0.33) benign(0.254) TCGA-YD-A9TA-06 X 154159225 154159225 G A F8 Missense_Mutation p.P947L 0.69 tolerated(0.45) benign(0.009) TCGA-YD-A9TA-06 X 16170654 16170654 G A GRPR Silent p.R347R 0.65 TCGA-YD-A9TA-06 X 1720116 1720116 C T AKAP17A Missense_Mutation p.R573W 0.47 tolerated_low_confidence(0.07) unknown(0) TCGA-YD-A9TA-06 X 21755674 21755674 C T SMPX 3'UTR 0.59 TCGA-YD-A9TA-06 X 22291105 22291105 G A ZNF645 5'UTR 0.68 TCGA-YD-A9TA-06 X 23398220 23398220 T C PTCHD1 Silent p.S288S 0.68 TCGA-YD-A9TA-06 X 2407055 2407055 A T ZBED1 Missense_Mutation p.V569E 0.52 tolerated(0.14) benign(0.008) TCGA-YD-A9TA-06 X 27998386 27998386 C T DCAF8L1 Missense_Mutation p.D356N 0.56 deleterious(0) possibly_damaging(0.823) TCGA-YD-A9TA-06 X 27999499 27999499 C T DCAF8L1 5'UTR 0.62 TCGA-YD-A9TA-06 X 2933082 2933082 C T ARSH Missense_Mutation p.H138Y 0.71 deleterious(0) benign(0.407) TCGA-YD-A9TA-06 X 29686544 29686544 C T IL1RAPL1 Intron 0.58 TCGA-YD-A9TA-06 X 299579 299579 G A PPP2R3B Silent p.F468F 0.41 TCGA-YD-A9TA-06 X 34150070 34150070 G A FAM47A Missense_Mutation p.P109L 0.69 tolerated(0.32) probably_damaging(0.991) TCGA-YD-A9TA-06 X 34150071 34150071 G A FAM47A Missense_Mutation p.P109S 0.70 tolerated(0.18) probably_damaging(0.986) TCGA-YD-A9TA-06 X 34150162 34150162 G A FAM47A Silent p.L78L 0.71 TCGA-YD-A9TA-06 X 37027801 37027801 C T FAM47C Missense_Mutation p.P440S 0.76 tolerated(0.11) benign(0.385) TCGA-YD-A9TA-06 X 37935855 37935855 G A SYTL5 Missense_Mutation p.G197E 0.87 tolerated(0.08) probably_damaging(0.998) TCGA-YD-A9TA-06 X 40531185 40531185 G A MED14 Missense_Mutation p.L1021F 0.68 tolerated(0.12) benign(0.221) TCGA-YD-A9TA-06 X 43590961 43590961 G A MAOA Silent p.A272A 0.73 TCGA-YD-A9TA-06 X 45011084 45011084 C T CXorf36 Missense_Mutation p.G372E 0.69 tolerated(0.21) benign(0.021) TCGA-YD-A9TA-06 X 46466433 46466433 G A SLC9A7 Missense_Mutation p.S711L 0.83 tolerated_low_confidence(0.51) benign(0.001) TCGA-YD-A9TA-06 X 47446144 47446144 C T TIMP1 3'UTR 0.78 TCGA-YD-A9TA-06 X 47919306 47919306 G A ZNF630 Silent p.F175F 0.77 TCGA-YD-A9TA-06 X 49455978 49455978 C T PAGE1 Splice_Site p.X56_splice 0.12 TCGA-YD-A9TA-06 X 50351102 50351102 T C SHROOM4 Missense_Mutation p.S1014G 0.45 tolerated(0.23) benign(0.002) TCGA-YD-A9TA-06 X 52677349 52677349 C T SSX7 Missense_Mutation p.G143E 0.80 tolerated(0.14) possibly_damaging(0.842) TCGA-YD-A9TA-06 X 53595723 53595723 G A HUWE1 Silent p.I2212I 1.00 TCGA-YD-A9TA-06 X 57619656 57619656 C T ZXDB Missense_Mutation p.P392L 0.85 deleterious(0.02) possibly_damaging(0.566) TCGA-YD-A9TA-06 X 65414950 65414950 C T HEPH Silent p.I514I 0.86 TCGA-YD-A9TA-06 X 67938037 67938037 A G STARD8 Silent p.V427V 0.93 TCGA-YD-A9TA-06 X 70146878 70146878 G A SLC7A3 Nonsense_Mutation p.Q434* 0.88 TCGA-YD-A9TA-06 X 71349794 71349794 G A RGAG4 Missense_Mutation p.R533C 0.88 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TA-06 X 7175531 7175531 G A STS Missense_Mutation p.G100E 0.59 tolerated(0.17) probably_damaging(1) TCGA-YD-A9TA-06 X 72433563 72433563 G A NAP1L2 Missense_Mutation p.P256S 0.85 deleterious(0.05) probably_damaging(0.999) TCGA-YD-A9TA-06 X 73064753 73064753 G A XIST RNA 0.79 TCGA-YD-A9TA-06 X 73641883 73641883 C T SLC16A2 Silent p.R137R 0.57 TCGA-YD-A9TA-06 X 77913863 77913863 G A ZCCHC5 Missense_Mutation p.R19W 0.64 deleterious_low_confidence(0) benign(0.153) TCGA-YD-A9TA-06 X 78616919 78616919 C T ITM2A Missense_Mutation p.E204K 0.83 tolerated(0.29) benign(0.026) TCGA-YD-A9TA-06 X 78618581 78618581 G A ITM2A Missense_Mutation p.S100F 0.75 tolerated(0.06) benign(0.008) TCGA-YD-A9TA-06 X 79698562 79698562 C T FAM46D Missense_Mutation p.S175F 0.82 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TA-06 X 79946628 79946628 G A BRWD3 Missense_Mutation p.P1176S 0.89 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 X 83128367 83128367 G A CYLC1 Silent p.K217K 0.82 TCGA-YD-A9TA-06 X 83129070 83129070 G A CYLC1 Missense_Mutation p.G452R 0.47 tolerated(0.64) benign(0.014) TCGA-YD-A9TA-06 X 83129381 83129381 G A CYLC1 Silent p.K555K 0.60 TCGA-YD-A9TA-06 X 86887405 86887405 C T KLHL4 Missense_Mutation p.P507L 0.78 deleterious(0) probably_damaging(1) TCGA-YD-A9TA-06 X 89177130 89177130 G A TGIF2LX Missense_Mutation p.E16K 0.78 deleterious_low_confidence(0.04) benign(0.014) TCGA-YD-A9TA-06 X 92927373 92927373 T G NAP1L3 Missense_Mutation p.I311L 0.85 deleterious(0) benign(0.002) TCGA-YD-A9TA-06 X 9693807 9693807 G A GPR143 Silent p.L398L 0.75 TCGA-YD-A9TA-06 X 99941731 99941731 C T SYTL4 Missense_Mutation p.R411K 0.73 tolerated(0.12) probably_damaging(0.993) TCGA-YD-A9TA-06 Y 21870862 21870862 G A KDM5D Missense_Mutation p.R994C 0.81 deleterious(0.01) benign(0.06) TCGA-YD-A9TA-06 Y 23702662 23702662 G A RBMY1A1 Splice_Site p.X131_splice 0.14 TCGA-YD-A9TA-06 Y 4967513 4967513 G A PCDH11Y Missense_Mutation p.G632R 0.67 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 10 103917207 103917207 C T NOLC1 Silent p.V112V 0.40 TCGA-YD-A9TB-06 10 104157737 104157737 G A NFKB2 Splice_Site p.X221_splice 0.40 TCGA-YD-A9TB-06 10 106918735 106918735 G A SORCS3 Missense_Mutation p.G572E 0.54 deleterious(0) probably_damaging(0.971) TCGA-YD-A9TB-06 10 127668899 127668899 C T FANK1 Silent p.I61I 0.20 TCGA-YD-A9TB-06 10 20357124 20357124 C T PLXDC2 Missense_Mutation p.P166L 0.25 deleterious(0) probably_damaging(0.925) TCGA-YD-A9TB-06 10 25878034 25878034 C T GPR158 Missense_Mutation p.H618Y 0.25 tolerated(0.11) benign(0.225) TCGA-YD-A9TB-06 10 44112679 44112679 C T ZNF485 Silent p.G396G 0.62 TCGA-YD-A9TB-06 10 45799318 45799318 C T OR13A1 Missense_Mutation p.D185N 0.16 tolerated(0.39) benign(0.004) TCGA-YD-A9TB-06 10 46248651 46248651 C T FAM21C Silent p.S382S 0.40 TCGA-YD-A9TB-06 10 50121405 50121405 C T LRRC18 Intron 0.21 TCGA-YD-A9TB-06 10 61832420 61832420 G A ANK3 Missense_Mutation p.S2740L 0.36 benign(0) TCGA-YD-A9TB-06 10 61946494 61946494 C T ANK3 Silent p.A688A 0.32 TCGA-YD-A9TB-06 10 72357937 72357937 G A PRF1 Missense_Mutation p.H514Y 0.16 deleterious(0.04) benign(0.099) TCGA-YD-A9TB-06 10 92509277 92509277 G A HTR7 Missense_Mutation p.S205F 0.43 tolerated(0.72) possibly_damaging(0.56) TCGA-YD-A9TB-06 11 117232695 117232695 G A CEP164 Missense_Mutation p.G180R 0.22 tolerated(0.23) benign(0.059) TCGA-YD-A9TB-06 11 123810752 123810752 C T OR4D5 Silent p.L143L 0.38 TCGA-YD-A9TB-06 11 31115636 31115636 C T DCDC1 Silent p.S693S 0.41 TCGA-YD-A9TB-06 11 5153532 5153532 G A OR52A5 Missense_Mutation p.S114L 0.15 deleterious(0) benign(0.165) TCGA-YD-A9TB-06 11 5323113 5323113 G A OR51B4 Missense_Mutation p.H22Y 0.15 tolerated(0.28) benign(0.039) TCGA-YD-A9TB-06 11 5475345 5475345 G A OR51I2 Missense_Mutation p.M209I 0.24 tolerated(0.31) benign(0.11) TCGA-YD-A9TB-06 11 5510734 5510734 C T OR52D1 Silent p.R266R 0.40 TCGA-YD-A9TB-06 11 5529738 5529738 C T UBQLN3 Missense_Mutation p.E351K 0.59 deleterious(0.01) benign(0.154) TCGA-YD-A9TB-06 11 55735140 55735140 A G OR10AG1 Missense_Mutation p.L267P 0.54 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 11 55889890 55889890 C T OR8H3 Silent p.I14I 0.45 TCGA-YD-A9TB-06 11 5799825 5799825 G A OR52N5 Missense_Mutation p.H14Y 0.13 tolerated(0.63) benign(0) TCGA-YD-A9TB-06 11 59271954 59271954 G A OR4D11 Silent p.K302K 0.25 TCGA-YD-A9TB-06 11 61630757 61630757 C T FADS2 Silent p.F328F 0.23 TCGA-YD-A9TB-06 11 63064897 63064897 C T SLC22A10 Missense_Mutation p.S210F 0.19 tolerated(0.21) benign(0.012) TCGA-YD-A9TB-06 11 67400524 67400524 G A TBX10 Silent p.F200F 0.26 TCGA-YD-A9TB-06 11 67800710 67800710 G A NDUFS8 Missense_Mutation p.C111Y 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-YD-A9TB-06 11 77921590 77921590 C T USP35 Missense_Mutation p.R897W 0.29 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 11 7817918 7817918 G A OR5P2 Missense_Mutation p.S191F 0.15 tolerated(0.2) benign(0.033) TCGA-YD-A9TB-06 11 8494822 8494822 G A STK33 Missense_Mutation p.P76L 0.13 tolerated_low_confidence(0.17) benign(0.001) TCGA-YD-A9TB-06 11 94353174 94353174 A G PIWIL4 Missense_Mutation p.Y769C 0.16 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 12 10603605 10603605 C T KLRC1 Missense_Mutation p.D51N 0.21 tolerated(0.41) benign(0.047) TCGA-YD-A9TB-06 12 112665955 112665956 - G HECTD4 Frame_Shift_Ins p.T2119Nfs*17 0.27 TCGA-YD-A9TB-06 12 14706311 14706311 C T PLBD1 Missense_Mutation p.E51K 0.19 tolerated(0.1) benign(0.17) TCGA-YD-A9TB-06 12 14769600 14769600 G A GUCY2C Silent p.F979F 0.19 TCGA-YD-A9TB-06 12 15262002 15262002 G A RERG 3'UTR 0.35 TCGA-YD-A9TB-06 12 15803912 15803912 G A EPS8 Missense_Mutation p.P427S 0.41 deleterious(0.01) possibly_damaging(0.562) TCGA-YD-A9TB-06 12 19506829 19506829 C T PLEKHA5 Missense_Mutation p.P1011S 0.42 deleterious(0) benign(0.326) TCGA-YD-A9TB-06 12 21015395 21015395 G A SLCO1B3 Silent p.G177G 0.40 TCGA-YD-A9TB-06 12 27148296 27148296 G A TM7SF3 Silent p.S188S 0.19 TCGA-YD-A9TB-06 12 43858461 43858461 G A ADAMTS20 Missense_Mutation p.S481L 0.18 tolerated(1) benign(0.008) TCGA-YD-A9TB-06 12 46601355 46601355 C T SLC38A1 Silent p.G146G 0.25 TCGA-YD-A9TB-06 12 48723339 48723339 G A H1FNT Missense_Mutation p.E89K 0.67 deleterious(0.01) possibly_damaging(0.81) TCGA-YD-A9TB-06 12 52914058 52914058 G A KRT5 Missense_Mutation p.S8F 0.36 deleterious(0.02) unknown(0) TCGA-YD-A9TB-06 12 55641591 55641591 C T OR6C74 Missense_Mutation p.H174Y 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-YD-A9TB-06 12 57114935 57114935 G A NACA Silent p.L127L 0.50 TCGA-YD-A9TB-06 12 57843372 57843372 C T INHBC Missense_Mutation p.S209L 0.60 tolerated(0.21) benign(0.004) TCGA-YD-A9TB-06 12 70956712 70956712 C T PTPRB Silent p.Q1360Q 0.12 TCGA-YD-A9TB-06 12 71978528 71978528 G A LGR5 3'UTR 0.61 TCGA-YD-A9TB-06 12 75875723 75875723 C T GLIPR1 Missense_Mutation p.S95L 0.23 tolerated(0.35) possibly_damaging(0.756) TCGA-YD-A9TB-06 12 80007379 80007379 C T PAWR Missense_Mutation p.R220K 0.15 tolerated(0.22) benign(0.018) TCGA-YD-A9TB-06 12 8211726 8211726 C T C3AR1 Missense_Mutation p.M352I 0.14 tolerated(0.07) benign(0.21) TCGA-YD-A9TB-06 12 936268 936268 C T WNK1 Silent p.I331I 0.18 TCGA-YD-A9TB-06 13 103498691 103498691 G C ERCC5 Missense_Mutation p.K25N 0.28 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 13 110827017 110827017 G A COL4A1 Missense_Mutation p.P1093L 0.10 probably_damaging(1) TCGA-YD-A9TB-06 13 20038636 20038636 G A TPTE2 Missense_Mutation p.P234L 0.38 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 13 20763525 20763525 C T GJB2 Missense_Mutation p.D66N 0.17 deleterious(0.04) probably_damaging(1) TCGA-YD-A9TB-06 13 25406052 25406052 C T RNF17 Silent p.S806S 0.11 TCGA-YD-A9TB-06 13 33284243 33284243 C T PDS5B Missense_Mutation p.S708L 0.17 deleterious(0.02) possibly_damaging(0.668) TCGA-YD-A9TB-06 13 38137507 38137507 C T POSTN Missense_Mutation p.G825E 0.15 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-YD-A9TB-06 13 52667323 52667323 C T NEK5 Missense_Mutation p.D359N 0.18 tolerated(0.12) benign(0.022) TCGA-YD-A9TB-06 13 58299144 58299144 G A PCDH17 Missense_Mutation p.E1066K 0.23 tolerated_low_confidence(0.09) benign(0.002) TCGA-YD-A9TB-06 13 86370102 86370102 C T SLITRK6 Missense_Mutation p.R181Q 0.34 tolerated(0.17) probably_damaging(0.999) TCGA-YD-A9TB-06 14 102549529 102549529 G C HSP90AA1 Missense_Mutation p.L655V 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-YD-A9TB-06 14 102918738 102918738 C T TECPR2 Silent p.F1138F 0.15 TCGA-YD-A9TB-06 14 20248664 20248664 C T OR4M1 Silent p.F61F 0.13 TCGA-YD-A9TB-06 14 22520794 22520794 G T TRAV21 Missense_Mutation p.L5F 0.30 deleterious(0.02) unknown(0) TCGA-YD-A9TB-06 14 23828660 23828660 G A EFS Missense_Mutation p.R343C 0.21 tolerated(0.21) benign(0.013) TCGA-YD-A9TB-06 14 24602013 24602013 C T FITM1 Missense_Mutation p.S287F 0.15 deleterious(0.02) benign(0.008) TCGA-YD-A9TB-06 14 24879347 24879347 C T NYNRIN Silent p.L783L 0.44 TCGA-YD-A9TB-06 14 44976176 44976176 G A FSCB Silent p.S5S 0.18 TCGA-YD-A9TB-06 14 52741531 52741531 G A PTGDR Missense_Mutation p.R310Q 0.17 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 14 67671311 67671311 G A FAM71D Silent p.L139L 0.12 TCGA-YD-A9TB-06 14 76099996 76099996 C T FLVCR2 Missense_Mutation p.A326V 0.10 deleterious(0) probably_damaging(0.923) TCGA-YD-A9TB-06 14 88935940 88935940 C G PTPN21 Missense_Mutation p.M1046I 0.11 tolerated(0.42) benign(0.004) TCGA-YD-A9TB-06 14 90738697 90738697 A C PSMC1 Missense_Mutation p.K423N 0.43 tolerated(0.07) possibly_damaging(0.714) TCGA-YD-A9TB-06 14 94568902 94568902 C T IFI27L1 Silent p.P101P 0.43 TCGA-YD-A9TB-06 14 94744964 94744964 G A PPP4R4 Missense_Mutation p.R869K 0.32 deleterious_low_confidence(0.02) benign(0.124) TCGA-YD-A9TB-06 15 20658997 20658997 G A HERC2P3 RNA 0.17 TCGA-YD-A9TB-06 15 24922364 24922364 G A NPAP1 Missense_Mutation p.M450I 0.18 tolerated(0.3) benign(0.013) TCGA-YD-A9TB-06 15 28414680 28414680 T C HERC2 Silent p.K3393K 0.12 TCGA-YD-A9TB-06 15 34657318 34657318 G A LPCAT4 Silent p.V123V 0.16 TCGA-YD-A9TB-06 15 38643705 38643705 C T SPRED1 Missense_Mutation p.S392L 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 15 43826883 43826883 C T PPIP5K1 Missense_Mutation p.E1431K 0.13 tolerated_low_confidence(0.16) benign(0.001) TCGA-YD-A9TB-06 15 43893130 43893130 C T STRC Missense_Mutation p.G1595D 0.14 tolerated(0.06) probably_damaging(1) TCGA-YD-A9TB-06 15 45391999 45391999 G A DUOX2 Silent p.F1092F 0.33 TCGA-YD-A9TB-06 15 54306867 54306867 G A UNC13C Silent p.R589R 0.18 TCGA-YD-A9TB-06 15 55664024 55664024 T A CCPG1 Missense_Mutation p.I225F 0.25 deleterious(0) probably_damaging(0.945) TCGA-YD-A9TB-06 15 63054495 63054495 C T TLN2 Silent p.L1602L 0.41 TCGA-YD-A9TB-06 15 83455549 83455549 C T FSD2 Silent p.K198K 0.15 TCGA-YD-A9TB-06 15 84651253 84651253 G A ADAMTSL3 Missense_Mutation p.R958Q 0.16 tolerated(0.18) benign(0.2) TCGA-YD-A9TB-06 15 86266406 86266406 T C AKAP13 Silent p.R2204R 0.47 TCGA-YD-A9TB-06 15 89414740 89414740 C T ACAN Silent p.I2358I 0.37 TCGA-YD-A9TB-06 16 1536239 1536239 G A PTX4 Missense_Mutation p.R375C 0.18 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TB-06 16 15832541 15832541 C T MYH11 Missense_Mutation p.R1008Q 0.17 benign(0.295) TCGA-YD-A9TB-06 16 24578784 24578784 C T RBBP6 Missense_Mutation p.S637F 0.35 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-YD-A9TB-06 16 25266553 25266553 C T ZKSCAN2 Missense_Mutation p.R187Q 0.10 tolerated(0.46) benign(0.342) TCGA-YD-A9TB-06 16 29818038 29818038 C T MAZ Missense_Mutation p.P6S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-YD-A9TB-06 16 3778057 3778057 G A CREBBP Missense_Mutation p.P2331S 0.17 unknown(0) TCGA-YD-A9TB-06 16 51175861 51175861 G A SALL1 Missense_Mutation p.P91L 0.16 tolerated(0.06) benign(0.001) TCGA-YD-A9TB-06 16 57597125 57597125 C T GPR114 Missense_Mutation p.S88L 0.18 tolerated(0.06) benign(0.014) TCGA-YD-A9TB-06 16 69727671 69727671 C T NFAT5 Missense_Mutation p.P1315S 0.10 benign(0.345) TCGA-YD-A9TB-06 16 71163647 71163647 G A HYDIN Nonsense_Mutation p.R375* 0.23 TCGA-YD-A9TB-06 16 71163648 71163648 G A HYDIN Silent p.L374L 0.20 TCGA-YD-A9TB-06 16 75512778 75512778 C T CHST6 Missense_Mutation p.E317K 0.11 tolerated(0.06) benign(0.108) TCGA-YD-A9TB-06 16 82069187 82069187 C T HSD17B2 Missense_Mutation p.S53F 0.33 deleterious(0.03) probably_damaging(0.935) TCGA-YD-A9TB-06 16 847080 847080 C T CHTF18 Silent p.A907A 0.27 TCGA-YD-A9TB-06 16 9856909 9856909 C T GRIN2A 3'UTR 0.21 TCGA-YD-A9TB-06 17 10304413 10304413 G A MYH8 Silent p.S1068S 0.15 TCGA-YD-A9TB-06 17 10398588 10398588 G A MYH1 Missense_Mutation p.S1739F 0.13 deleterious(0.04) possibly_damaging(0.466) TCGA-YD-A9TB-06 17 1518272 1518272 C T SLC43A2 Splice_Site p.X142_splice 0.33 TCGA-YD-A9TB-06 17 17062080 17062080 G A MPRIP Missense_Mutation p.G604R 0.12 tolerated(0.08) possibly_damaging(0.669) TCGA-YD-A9TB-06 17 21117505 21117505 G A TMEM11 5'UTR 0.33 TCGA-YD-A9TB-06 17 38562866 38562866 G A TOP2A Missense_Mutation p.H605Y 0.19 tolerated(1) benign(0.001) TCGA-YD-A9TB-06 17 39727770 39727770 C T KRT9 Missense_Mutation p.E159K 0.21 deleterious(0) possibly_damaging(0.459) TCGA-YD-A9TB-06 17 40328246 40328246 G A KCNH4 Missense_Mutation p.L219F 0.24 deleterious(0.03) benign(0.175) TCGA-YD-A9TB-06 17 42225449 42225449 C T C17orf53 Missense_Mutation p.P93L 0.19 tolerated(0.12) benign(0.258) TCGA-YD-A9TB-06 17 43923358 43923358 C T SPPL2C Silent p.F362F 0.22 TCGA-YD-A9TB-06 17 45361996 45361996 G A ITGB3 Silent p.V183V 0.52 TCGA-YD-A9TB-06 17 5085945 5085945 C A ZNF594 Missense_Mutation p.S536I 0.46 deleterious(0.04) benign(0.099) TCGA-YD-A9TB-06 17 534807 534807 G A VPS53 Missense_Mutation p.P224S 0.13 tolerated(1) benign(0.004) TCGA-YD-A9TB-06 17 56405063 56405063 C T BZRAP1 Silent p.G73G 0.16 TCGA-YD-A9TB-06 17 61499124 61499124 T C TANC2 Silent p.A1927A 0.23 TCGA-YD-A9TB-06 17 61957738 61957738 G A GH2 3'UTR 0.13 TCGA-YD-A9TB-06 17 72938024 72938024 C A OTOP3 Silent p.T173T 0.10 TCGA-YD-A9TB-06 17 73914133 73914133 G A FBF1 Silent p.I740I 0.25 TCGA-YD-A9TB-06 17 78831591 78831591 C A RPTOR Missense_Mutation p.A467D 0.37 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 18 28934785 28934785 G A DSG1 Missense_Mutation p.D876N 0.48 tolerated(0.2) benign(0.113) TCGA-YD-A9TB-06 18 3272938 3272938 C T MYL12B Silent p.R14R 0.23 TCGA-YD-A9TB-06 18 44561069 44561069 G A TCEB3B Silent p.P189P 0.17 TCGA-YD-A9TB-06 18 47432786 47432786 C T MYO5B Intron 0.48 TCGA-YD-A9TB-06 18 49867054 49867054 G A DCC 5'UTR 0.24 TCGA-YD-A9TB-06 18 56585986 56585986 G A ZNF532 Missense_Mutation p.R156Q 0.49 tolerated(0.8) benign(0.003) TCGA-YD-A9TB-06 18 59157865 59157865 G A CDH20 Missense_Mutation p.D27N 0.28 tolerated(0.29) benign(0.001) TCGA-YD-A9TB-06 18 6942198 6942198 G A LAMA1 Silent p.F3036F 0.18 TCGA-YD-A9TB-06 19 12866437 12866437 C T BEST2 Silent p.T241T 0.30 TCGA-YD-A9TB-06 19 12885630 12885630 G T HOOK2 Missense_Mutation p.Q43K 0.15 tolerated(0.4) benign(0.003) TCGA-YD-A9TB-06 19 16910773 16910773 G A NWD1 Missense_Mutation p.R1179H 0.22 tolerated(0.53) benign(0.008) TCGA-YD-A9TB-06 19 17295741 17295741 C T MYO9B Missense_Mutation p.S814F 0.18 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TB-06 19 21720783 21720783 A G ZNF429 Missense_Mutation p.H643R 0.44 deleterious(0) benign(0.148) TCGA-YD-A9TB-06 19 22379498 22379498 C T ZNF676 5'UTR 0.14 TCGA-YD-A9TB-06 19 30311630 30311630 C T CCNE1 Missense_Mutation p.H162Y 0.45 deleterious(0.01) benign(0.325) TCGA-YD-A9TB-06 19 3527058 3527058 G A FZR1 Silent p.K156K 0.15 TCGA-YD-A9TB-06 19 39819205 39819205 C G GMFG Intron 0.24 TCGA-YD-A9TB-06 19 42300592 42300592 G A CEACAM3 5'UTR 0.22 TCGA-YD-A9TB-06 19 43763066 43763066 C T PSG9 Missense_Mutation p.E311K 0.18 tolerated(0.29) possibly_damaging(0.89) TCGA-YD-A9TB-06 19 44513001 44513001 G A ZNF230 Silent p.L25L 0.53 TCGA-YD-A9TB-06 19 47861278 47861278 C T DHX34 Silent p.I391I 0.13 TCGA-YD-A9TB-06 19 49132560 49132560 C T SPHK2 Missense_Mutation p.L499F 0.19 tolerated(0.19) benign(0.004) TCGA-YD-A9TB-06 19 50149786 50149786 T C SCAF1 Silent p.L89L 0.58 TCGA-YD-A9TB-06 19 52327069 52327069 C T FPR3 Missense_Mutation p.T23I 0.60 tolerated(0.34) benign(0.009) TCGA-YD-A9TB-06 19 55331168 55331168 G A KIR3DL1 Missense_Mutation p.G119E 0.53 deleterious(0) probably_damaging(0.943) TCGA-YD-A9TB-06 19 55333101 55333101 C T KIR3DL1 Missense_Mutation p.S246F 0.48 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TB-06 19 56701693 56701693 G A ZSCAN5B Missense_Mutation p.P331S 0.14 tolerated(1) benign(0.026) TCGA-YD-A9TB-06 19 57326586 57326586 C T PEG3 Missense_Mutation p.S1075N 0.13 tolerated(0.49) benign(0.002) TCGA-YD-A9TB-06 19 57326708 57326708 C T PEG3 Silent p.K1034K 0.11 TCGA-YD-A9TB-06 19 9073187 9073187 G A MUC16 Silent p.V4753V 0.48 TCGA-YD-A9TB-06 19 9091144 9091144 C T MUC16 Missense_Mutation p.G224E 0.18 unknown(0) TCGA-YD-A9TB-06 19 9226346 9226346 G A OR7G1 Silent p.L32L 0.19 TCGA-YD-A9TB-06 19 9492153 9492153 C T ZNF177 Silent p.S382S 0.49 TCGA-YD-A9TB-06 1 10700058 10700058 C T CASZ1 Silent p.E1407E 0.11 TCGA-YD-A9TB-06 1 114320326 114320326 G A RSBN1 Silent p.F494F 0.25 TCGA-YD-A9TB-06 1 1203233 1203233 G A UBE2J2 Intron 0.24 TCGA-YD-A9TB-06 1 12919885 12919885 G A PRAMEF2 Missense_Mutation p.E209K 0.24 deleterious(0.01) benign(0.247) TCGA-YD-A9TB-06 1 12921510 12921510 G A PRAMEF2 Missense_Mutation p.R434Q 0.21 tolerated(0.37) benign(0.006) TCGA-YD-A9TB-06 1 151276049 151276049 C T PI4KB Silent p.K508K 0.30 TCGA-YD-A9TB-06 1 152329514 152329514 C T FLG2 Missense_Mutation p.E250K 0.30 unknown(0) TCGA-YD-A9TB-06 1 152538680 152538680 G A LCE3E Missense_Mutation p.S2F 0.14 tolerated_low_confidence(0.15) unknown(0) TCGA-YD-A9TB-06 1 153084960 153084960 C T SPRR2F 3'UTR 0.28 TCGA-YD-A9TB-06 1 153122339 153122339 C T SPRR2G 3'UTR 0.48 TCGA-YD-A9TB-06 1 153177231 153177231 C T LELP1 Silent p.P16P 0.14 TCGA-YD-A9TB-06 1 154319176 154319176 C G ATP8B2 Silent p.L1068L 0.18 TCGA-YD-A9TB-06 1 155240727 155240727 G A CLK2 Silent p.S14S 0.13 TCGA-YD-A9TB-06 1 156108479 156108479 G A LMNA Silent p.G633G 0.22 TCGA-YD-A9TB-06 1 157509089 157509089 C T FCRL5 Missense_Mutation p.V397M 0.09 tolerated(0.42) benign(0.175) TCGA-YD-A9TB-06 1 158669486 158669486 G A OR6K2 Silent p.T319T 0.15 TCGA-YD-A9TB-06 1 158687447 158687447 G A OR6K3 Silent p.F153F 0.22 TCGA-YD-A9TB-06 1 158813102 158813102 C T MNDA Missense_Mutation p.P100L 0.23 tolerated(0.07) benign(0.001) TCGA-YD-A9TB-06 1 167817630 167817630 C T ADCY10 Silent p.L802L 0.18 TCGA-YD-A9TB-06 1 169511239 169511239 C T F5 Missense_Mutation p.R1030Q 0.25 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 1 171165864 171165864 G A FMO2 Missense_Mutation p.G133D 0.13 deleterious(0.01) possibly_damaging(0.609) TCGA-YD-A9TB-06 1 171511077 171511077 C T PRRC2C Missense_Mutation p.S1489L 0.58 unknown(0) TCGA-YD-A9TB-06 1 175087768 175087768 G A TNN Missense_Mutation p.V820M 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-YD-A9TB-06 1 176671814 176671814 C T PAPPA2 Missense_Mutation p.S1103L 0.14 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 1 181680138 181680138 G A CACNA1E Missense_Mutation p.M368I 0.36 deleterious(0.04) benign(0.019) TCGA-YD-A9TB-06 1 183273853 183273853 C T NMNAT2 Intron 0.11 TCGA-YD-A9TB-06 1 190068007 190068007 G A BRINP3 Missense_Mutation p.S481F 0.13 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TB-06 1 197390762 197390762 G A CRB1 Missense_Mutation p.D602N 0.13 tolerated(0.51) benign(0.03) TCGA-YD-A9TB-06 1 200561362 200561362 G A KIF14 Nonsense_Mutation p.R887* 0.20 TCGA-YD-A9TB-06 1 200877950 200877950 G A C1orf106 Missense_Mutation p.G223R 0.18 tolerated(0.36) benign(0.004) TCGA-YD-A9TB-06 1 201195139 201195139 C T IGFN1 Silent p.L3558L 0.17 TCGA-YD-A9TB-06 1 201973568 201973568 C T RNPEP Missense_Mutation p.L580F 0.20 deleterious(0.01) benign(0.098) TCGA-YD-A9TB-06 1 204923353 204923353 G A NFASC Missense_Mutation p.A85T 0.21 tolerated(0.07) possibly_damaging(0.766) TCGA-YD-A9TB-06 1 205568258 205568258 G A MFSD4 Splice_Site p.X457_splice 0.11 TCGA-YD-A9TB-06 1 207143429 207143429 C T FCAMR Intron 0.20 TCGA-YD-A9TB-06 1 210948851 210948851 C T KCNH1 Missense_Mutation p.E651K 0.28 deleterious(0.02) possibly_damaging(0.573) TCGA-YD-A9TB-06 1 216692740 216692740 C T ESRRG Missense_Mutation p.D308N 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-YD-A9TB-06 1 21938251 21938251 A C RAP1GAP Missense_Mutation p.L288R 0.26 deleterious(0) probably_damaging(0.996) TCGA-YD-A9TB-06 1 240256597 240256597 C T FMN2 Silent p.S396S 0.30 TCGA-YD-A9TB-06 1 242253225 242253225 G A PLD5 Silent p.F514F 0.19 TCGA-YD-A9TB-06 1 247588257 247588257 G T NLRP3 Missense_Mutation p.R504S 0.11 tolerated(0.13) benign(0.045) TCGA-YD-A9TB-06 1 247719743 247719743 G A GCSAML Missense_Mutation p.G22R 0.29 tolerated(0.37) benign(0) TCGA-YD-A9TB-06 1 248402576 248402576 G C OR2M4 Missense_Mutation p.A116P 0.22 deleterious(0.02) benign(0.32) TCGA-YD-A9TB-06 1 248512922 248512922 C T OR14C36 Silent p.L282L 0.12 TCGA-YD-A9TB-06 1 248789527 248789527 T C OR2T11 Silent p.V301V 0.12 TCGA-YD-A9TB-06 1 27708858 27708858 C T CD164L2 Silent p.K96K 0.23 TCGA-YD-A9TB-06 1 32377356 32377356 G A PTP4A2 Silent p.T87T 0.45 TCGA-YD-A9TB-06 1 33999487 33999487 G A CSMD2 Silent p.F3156F 0.23 TCGA-YD-A9TB-06 1 35853168 35853168 T A ZMYM4 Silent p.V742V 0.22 TCGA-YD-A9TB-06 1 42045865 42045865 G A HIVEP3 Missense_Mutation p.P1535L 0.35 benign(0) TCGA-YD-A9TB-06 1 47339000 47339000 C T CYP4Z2P RNA 0.38 TCGA-YD-A9TB-06 1 47685580 47685580 C T TAL1 Missense_Mutation p.G270R 0.50 deleterious(0.02) benign(0.211) TCGA-YD-A9TB-06 1 74507245 74507245 A C LRRIQ3 Missense_Mutation p.V457G 0.28 deleterious(0) possibly_damaging(0.489) TCGA-YD-A9TB-06 1 78177433 78177433 C T USP33 Missense_Mutation p.R833Q 0.16 tolerated(0.27) possibly_damaging(0.83) TCGA-YD-A9TB-06 1 79387302 79387302 G A ELTD1 Missense_Mutation p.S418F 0.29 tolerated(0.06) benign(0.033) TCGA-YD-A9TB-06 1 86372929 86372929 C T COL24A1 Missense_Mutation p.G909D 0.10 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 20 30414705 30414705 C T MYLK2 Silent p.F396F 0.09 TCGA-YD-A9TB-06 20 36031155 36031155 C T SRC Missense_Mutation p.A425V 0.11 deleterious(0.02) possibly_damaging(0.63) TCGA-YD-A9TB-06 20 3677533 3677533 G A SIGLEC1 Missense_Mutation p.P795S 0.45 deleterious(0.02) possibly_damaging(0.589) TCGA-YD-A9TB-06 20 37536743 37536743 C T PPP1R16B Silent p.I367I 0.44 TCGA-YD-A9TB-06 20 9365010 9365010 G A PLCB4 Missense_Mutation p.G339E 0.17 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 21 10933925 10933925 G A TPTE Silent p.F318F 0.03 TCGA-YD-A9TB-06 21 10969090 10969090 G A TPTE Missense_Mutation p.S53L 0.14 tolerated(0.18) benign(0.084) TCGA-YD-A9TB-06 21 16337999 16337999 G T NRIP1 Missense_Mutation p.H839N 0.07 tolerated(0.29) benign(0.107) TCGA-YD-A9TB-06 21 35890351 35890351 G A RCAN1 3'UTR 0.14 TCGA-YD-A9TB-06 21 48071747 48071747 C T PRMT2 Intron 0.42 TCGA-YD-A9TB-06 22 25270530 25270530 G A SGSM1 Silent p.P480P 0.33 TCGA-YD-A9TB-06 22 31335625 31335625 G A MORC2 Silent p.I290I 0.25 TCGA-YD-A9TB-06 22 36678572 36678572 G A MYH9 3'UTR 0.37 TCGA-YD-A9TB-06 22 37319366 37319366 G A CSF2RB Missense_Mutation p.A53T 0.11 tolerated(0.09) benign(0.139) TCGA-YD-A9TB-06 2 101885921 101885921 T A CNOT11 3'UTR 0.43 TCGA-YD-A9TB-06 2 102781666 102781666 C T IL1R1 Nonsense_Mutation p.Q130* 0.22 TCGA-YD-A9TB-06 2 103148910 103148910 G A SLC9A4 Silent p.R720R 0.47 TCGA-YD-A9TB-06 2 128408808 128408808 C T GPR17 Silent p.L195L 0.09 TCGA-YD-A9TB-06 2 131521949 131521949 C T AMER3 Silent p.A768A 0.50 TCGA-YD-A9TB-06 2 136026591 136026591 G A ZRANB3 Missense_Mutation p.H443Y 0.17 deleterious(0) possibly_damaging(0.667) TCGA-YD-A9TB-06 2 141116399 141116399 G A LRP1B Missense_Mutation p.H3750Y 0.11 benign(0.152) TCGA-YD-A9TB-06 2 152487726 152487726 C T NEB Silent p.L3183L 0.31 TCGA-YD-A9TB-06 2 163059615 163059615 G A FAP Missense_Mutation p.S363L 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-YD-A9TB-06 2 166003454 166003454 G A SCN3A Missense_Mutation p.S489L 0.09 deleterious(0.02) probably_damaging(0.943) TCGA-YD-A9TB-06 2 166895966 166895966 C T SCN1A Silent p.V852V 0.21 TCGA-YD-A9TB-06 2 170059379 170059379 C T LRP2 Missense_Mutation p.R2699Q 0.26 possibly_damaging(0.826) TCGA-YD-A9TB-06 2 175260352 175260352 T G CIR1 5'UTR 0.31 TCGA-YD-A9TB-06 2 179418325 179418325 C T TTN Missense_Mutation p.G29803R 0.18 TCGA-YD-A9TB-06 2 179435181 179435181 C T TTN Nonsense_Mutation p.W25226* 0.44 TCGA-YD-A9TB-06 2 179542486 179542486 G A TTN Silent p.L11385L 0.15 TCGA-YD-A9TB-06 2 179605681 179605681 A G TTN Silent p.S4093S 0.19 TCGA-YD-A9TB-06 2 179635353 179635353 C T TTN Silent p.Q2722Q 0.49 TCGA-YD-A9TB-06 2 188243718 188243718 C T CALCRL Missense_Mutation p.G150E 0.30 deleterious(0.01) possibly_damaging(0.649) TCGA-YD-A9TB-06 2 196636554 196636554 C T DNAH7 Missense_Mutation p.D3755N 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-YD-A9TB-06 2 196718182 196718182 C T DNAH7 Missense_Mutation p.R2889Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TB-06 2 198968568 198968568 G A PLCL1 Missense_Mutation p.E1005K 0.18 tolerated(0.32) benign(0.009) TCGA-YD-A9TB-06 2 21225026 21225026 G A APOB Missense_Mutation p.S4423F 0.47 benign(0.38) TCGA-YD-A9TB-06 2 220356833 220356833 G A SPEG Missense_Mutation p.M3154I 0.53 benign(0.071) TCGA-YD-A9TB-06 2 230253101 230253101 C T DNER Missense_Mutation p.D579N 0.24 deleterious(0) benign(0.126) TCGA-YD-A9TB-06 2 233899487 233899487 C T NEU2 Missense_Mutation p.S288F 0.24 deleterious(0.05) benign(0.009) TCGA-YD-A9TB-06 2 234365885 234365885 C T DGKD Missense_Mutation p.P831S 0.36 tolerated(0.55) benign(0.162) TCGA-YD-A9TB-06 2 238233342 238233342 G A COL6A3 3'UTR 0.44 TCGA-YD-A9TB-06 2 238296698 238296698 C T COL6A3 Missense_Mutation p.R280Q 0.16 benign(0.216) TCGA-YD-A9TB-06 2 37028483 37028483 G A VIT Silent p.T366T 0.18 TCGA-YD-A9TB-06 2 55771500 55771500 G A CCDC104 Missense_Mutation p.V308I 0.26 tolerated(0.18) benign(0.018) TCGA-YD-A9TB-06 2 70890496 70890496 G A ADD2 3'UTR 0.16 TCGA-YD-A9TB-06 2 73315500 73315500 C T RAB11FIP5 Missense_Mutation p.G416R 0.33 tolerated(0.54) possibly_damaging(0.611) TCGA-YD-A9TB-06 2 89117800 89117800 G A AC096579.13 RNA 0.50 TCGA-YD-A9TB-06 2 89309734 89309734 G A IGKV1-9 Silent p.F32F 0.17 TCGA-YD-A9TB-06 2 97531216 97531216 G A SEMA4C Missense_Mutation p.P160L 0.10 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 2 98341698 98341698 G A ZAP70 Silent p.Q182Q 0.27 TCGA-YD-A9TB-06 3 102183056 102183056 G A ZPLD1 Missense_Mutation p.G257E 0.24 tolerated(0.24) probably_damaging(0.963) TCGA-YD-A9TB-06 3 10392150 10392150 G A ATP2B2 Missense_Mutation p.P750S 0.20 deleterious(0.02) probably_damaging(1) TCGA-YD-A9TB-06 3 111356990 111356990 G A CD96 Silent p.T500T 0.49 TCGA-YD-A9TB-06 3 123512549 123512549 C T MYLK Missense_Mutation p.G47E 0.35 deleterious(0) benign(0.288) TCGA-YD-A9TB-06 3 125836882 125836882 C T ALDH1L1 Missense_Mutation p.G660S 0.11 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 3 127323932 127323932 C T MCM2 Silent p.F202F 0.14 TCGA-YD-A9TB-06 3 132407708 132407708 C A NPHP3 Nonsense_Mutation p.E971* 0.12 TCGA-YD-A9TB-06 3 154878217 154878217 C T MME Missense_Mutation p.S547F 0.21 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 3 164733768 164733768 C T SI Missense_Mutation p.G1287E 0.15 tolerated(0.85) benign(0.008) TCGA-YD-A9TB-06 3 168806887 168806887 C T MECOM Missense_Mutation p.M1039I 0.14 tolerated(0.31) benign(0.007) TCGA-YD-A9TB-06 3 170800176 170800176 G A TNIK Silent p.N1059N 0.16 TCGA-YD-A9TB-06 3 179096514 179096514 C T MFN1 Missense_Mutation p.S525F 0.35 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 3 186389541 186389541 C T HRG Missense_Mutation p.S174F 0.17 tolerated(0.59) possibly_damaging(0.485) TCGA-YD-A9TB-06 3 189582118 189582118 G A TP63 Missense_Mutation p.R226H 0.57 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 3 190147407 190147407 C T TMEM207 Missense_Mutation p.E140K 0.16 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 3 27760348 27760348 G A EOMES Nonsense_Mutation p.R399* 0.14 TCGA-YD-A9TB-06 3 38454442 38454442 C T XYLB Missense_Mutation p.L517F 0.40 deleterious(0) benign(0.103) TCGA-YD-A9TB-06 3 38607906 38607906 G A SCN5A Silent p.I1278I 0.35 TCGA-YD-A9TB-06 3 39225747 39225747 T C XIRP1 Silent p.Q1730Q 0.37 TCGA-YD-A9TB-06 3 45000782 45000782 G A ZDHHC3 Silent p.I49I 0.20 TCGA-YD-A9TB-06 3 46414489 46414489 C T CCR5 Silent p.L32L 0.18 TCGA-YD-A9TB-06 3 47047672 47047672 C T NBEAL2 Missense_Mutation p.H2313Y 0.67 deleterious(0.01) benign(0.233) TCGA-YD-A9TB-06 3 50222195 50222195 G A SEMA3F Silent p.V468V 0.16 TCGA-YD-A9TB-06 3 51982337 51982337 G A PARP3 Silent p.Q488Q 0.18 TCGA-YD-A9TB-06 3 63973742 63973742 C T ATXN7 Missense_Mutation p.S368F 0.38 deleterious(0) probably_damaging(0.959) TCGA-YD-A9TB-06 3 87313449 87313449 C T POU1F1 Missense_Mutation p.R169Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TB-06 3 9547675 9547675 C T LHFPL4 Missense_Mutation p.E207K 0.19 deleterious(0.01) benign(0.285) TCGA-YD-A9TB-06 3 97806497 97806497 C T OR5AC2 Missense_Mutation p.H161Y 0.17 deleterious(0) probably_damaging(0.989) TCGA-YD-A9TB-06 4 100197681 100197681 C T ADH1A 3'UTR 0.22 TCGA-YD-A9TB-06 4 106367545 106367545 G A PPA2 Missense_Mutation p.P146S 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 4 115597109 115597109 G A UGT8 Missense_Mutation p.E431K 0.08 tolerated(0.54) benign(0.338) TCGA-YD-A9TB-06 4 123260561 123260561 C T KIAA1109 Missense_Mutation p.P4117L 0.08 benign(0.009) TCGA-YD-A9TB-06 4 141334191 141334191 G A CLGN Silent p.F14F 0.18 TCGA-YD-A9TB-06 4 141622683 141622683 G A TBC1D9 Silent p.S72S 0.27 TCGA-YD-A9TB-06 4 145633170 145633170 G A HHIP Missense_Mutation p.G457E 0.23 deleterious(0) benign(0.004) TCGA-YD-A9TB-06 4 151935588 151935588 G C LRBA Silent p.V69V 0.11 TCGA-YD-A9TB-06 4 155253827 155253827 A T DCHS2 Missense_Mutation p.I679N 0.37 tolerated(0.06) possibly_damaging(0.729) TCGA-YD-A9TB-06 4 166913964 166913964 G A TLL1 Missense_Mutation p.G97R 0.29 deleterious(0.04) benign(0.006) TCGA-YD-A9TB-06 4 166915681 166915681 C T TLL1 Silent p.F170F 0.12 TCGA-YD-A9TB-06 4 177067143 177067143 C T WDR17 Intron 0.14 TCGA-YD-A9TB-06 4 187077218 187077218 C T FAM149A Missense_Mutation p.P150S 0.30 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 4 189012984 189012984 C G TRIML2 Missense_Mutation p.R236T 0.14 tolerated(0.05) possibly_damaging(0.592) TCGA-YD-A9TB-06 4 189063553 189063553 C T TRIML1 Silent p.L218L 0.14 TCGA-YD-A9TB-06 4 20569158 20569158 C T SLIT2 Silent p.V956V 0.10 TCGA-YD-A9TB-06 4 20599915 20599915 C T SLIT2 Missense_Mutation p.L1197F 0.18 deleterious(0) possibly_damaging(0.633) TCGA-YD-A9TB-06 4 2896390 2896390 T C ADD1 Missense_Mutation p.S225P 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-YD-A9TB-06 4 40099113 40099113 C T N4BP2 Silent p.F51F 0.15 TCGA-YD-A9TB-06 4 47680048 47680048 C T CORIN Missense_Mutation p.E386K 0.47 deleterious(0.02) probably_damaging(0.96) TCGA-YD-A9TB-06 4 6863893 6863893 C T KIAA0232 Missense_Mutation p.S595L 0.13 deleterious(0) probably_damaging(0.951) TCGA-YD-A9TB-06 4 69533840 69533840 T C UGT2B15 Missense_Mutation p.D264G 0.10 deleterious(0) probably_damaging(0.938) TCGA-YD-A9TB-06 4 69535682 69535682 G A UGT2B15 Missense_Mutation p.L219F 0.15 tolerated(0.14) benign(0.25) TCGA-YD-A9TB-06 4 75695286 75695286 G A BTC Missense_Mutation p.P49S 0.18 tolerated(0.34) benign(0.015) TCGA-YD-A9TB-06 4 79351532 79351532 C T FRAS1 Missense_Mutation p.L1644F 0.41 benign(0.008) TCGA-YD-A9TB-06 4 96762057 96762057 C T PDHA2 Silent p.V252V 0.14 TCGA-YD-A9TB-06 5 132159053 132159053 G A SHROOM1 Silent p.F705F 0.27 TCGA-YD-A9TB-06 5 135583291 135583291 G A TRPC7 Missense_Mutation p.S571L 0.20 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 5 136324216 136324216 C T SPOCK1 Missense_Mutation p.D275N 0.16 deleterious(0) probably_damaging(0.993) TCGA-YD-A9TB-06 5 13717441 13717441 C T DNAH5 Missense_Mutation p.D4230N 0.26 possibly_damaging(0.822) TCGA-YD-A9TB-06 5 13754372 13754372 C T DNAH5 Missense_Mutation p.E3499K 0.39 possibly_damaging(0.621) TCGA-YD-A9TB-06 5 137622255 137622255 G A CDC25C Missense_Mutation p.P364L 0.18 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TB-06 5 140221236 140221236 G A PCDHA8 Silent p.V110V 0.20 TCGA-YD-A9TB-06 5 140530709 140530709 G A PCDHB6 Missense_Mutation p.E291K 0.32 tolerated(0.16) benign(0.005) TCGA-YD-A9TB-06 5 140563062 140563062 G A PCDHB16 Missense_Mutation p.E310K 0.25 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-YD-A9TB-06 5 140764433 140764433 C T PCDHGA7 Missense_Mutation p.A656V 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-YD-A9TB-06 5 161324542 161324542 C T GABRA1 3'UTR 0.30 TCGA-YD-A9TB-06 5 175111172 175111172 C T HRH2 Silent p.S312S 0.18 TCGA-YD-A9TB-06 5 177733890 177733890 C T COL23A1 Missense_Mutation p.R131K 0.62 tolerated(0.09) unknown(0) TCGA-YD-A9TB-06 5 19473672 19473672 G A CDH18 Missense_Mutation p.P679L 0.24 tolerated(0.3) probably_damaging(0.999) TCGA-YD-A9TB-06 5 24505348 24505348 C T CDH10 Silent p.L422L 0.19 TCGA-YD-A9TB-06 5 35954373 35954373 C T UGT3A1 Nonsense_Mutation p.W501* 0.44 TCGA-YD-A9TB-06 5 38438491 38438491 C T EGFLAM Missense_Mutation p.R800W 0.17 deleterious(0.05) possibly_damaging(0.776) TCGA-YD-A9TB-06 5 78375208 78375208 G A BHMT2 Missense_Mutation p.M61I 0.22 deleterious(0.03) benign(0.001) TCGA-YD-A9TB-06 5 79855559 79855559 C T ANKRD34B Missense_Mutation p.E94K 0.17 deleterious(0.02) possibly_damaging(0.811) TCGA-YD-A9TB-06 5 82838004 82838004 C T VCAN Missense_Mutation p.S3061F 0.26 tolerated(1) benign(0.146) TCGA-YD-A9TB-06 5 90040914 90040914 C T GPR98 Missense_Mutation p.S3534L 0.24 benign(0) TCGA-YD-A9TB-06 5 916059 916059 C T TRIP13 Missense_Mutation p.P392S 0.39 deleterious(0) probably_damaging(0.986) TCGA-YD-A9TB-06 5 96139167 96139167 G A ERAP1 Missense_Mutation p.L155F 0.22 deleterious(0.05) possibly_damaging(0.903) TCGA-YD-A9TB-06 6 102376477 102376477 A G GRIK2 Silent p.V685V 0.15 TCGA-YD-A9TB-06 6 10877598 10877598 C T GCM2 Missense_Mutation p.E40K 0.13 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 6 117244345 117244345 C T RFX6 Nonsense_Mutation p.R505* 0.12 TCGA-YD-A9TB-06 6 117638307 117638307 G A ROS1 Missense_Mutation p.T2045M 0.26 tolerated(0.14) benign(0.011) TCGA-YD-A9TB-06 6 132022467 132022467 G A OR2A4 Silent p.L25L 0.15 TCGA-YD-A9TB-06 6 150267701 150267701 C T ULBP2 Silent p.S181S 0.12 TCGA-YD-A9TB-06 6 152826396 152826396 C T SYNE1 Missense_Mutation p.E240K 0.23 benign(0.112) TCGA-YD-A9TB-06 6 167343056 167343056 A T RNASET2 3'UTR 0.21 TCGA-YD-A9TB-06 6 20781397 20781397 G T CDKAL1 Missense_Mutation p.G180V 0.28 deleterious(0.01) benign(0.342) TCGA-YD-A9TB-06 6 26469115 26469115 C T BTN2A1 3'UTR 0.41 TCGA-YD-A9TB-06 6 28268787 28268787 C T PGBD1 Missense_Mutation p.P386S 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-YD-A9TB-06 6 33271921 33271921 C T TAPBP Silent p.K428K 0.10 TCGA-YD-A9TB-06 6 40400691 40400691 T G LRFN2 Silent p.T54T 0.09 TCGA-YD-A9TB-06 6 42196139 42196139 C T TRERF1 Missense_Mutation p.D1183N 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.555) TCGA-YD-A9TB-06 6 46801225 46801225 G A MEP1A Missense_Mutation p.R520K 0.31 deleterious(0) probably_damaging(0.926) TCGA-YD-A9TB-06 6 49696394 49696394 G A CRISP3 3'UTR 0.29 TCGA-YD-A9TB-06 6 54805986 54805986 C T FAM83B Silent p.S739S 0.54 TCGA-YD-A9TB-06 6 63990433 63990433 C T LGSN Silent p.G341G 0.17 TCGA-YD-A9TB-06 6 74079338 74079338 C T OOEP Missense_Mutation p.D60N 0.20 deleterious(0.03) benign(0.05) TCGA-YD-A9TB-06 6 87966653 87966653 C T ZNF292 Silent p.V1102V 0.21 TCGA-YD-A9TB-06 6 90418237 90418237 G A MDN1 Missense_Mutation p.L2626F 0.35 possibly_damaging(0.707) TCGA-YD-A9TB-06 7 100778804 100778804 G A SERPINE1 Missense_Mutation p.R310K 0.50 tolerated(1) benign(0.003) TCGA-YD-A9TB-06 7 113517867 113517867 A G PPP1R3A Silent p.L1094L 0.30 TCGA-YD-A9TB-06 7 117267701 117267701 G A CFTR Silent p.V1198V 0.16 TCGA-YD-A9TB-06 7 123119855 123119855 C T IQUB Silent p.L468L 0.26 TCGA-YD-A9TB-06 7 127014134 127014134 G A ZNF800 Missense_Mutation p.S419L 0.11 tolerated(0.25) benign(0.021) TCGA-YD-A9TB-06 7 127251241 127251241 C T PAX4 Silent p.P303P 0.50 TCGA-YD-A9TB-06 7 134849760 134849760 G T TMEM140 3'UTR 0.26 TCGA-YD-A9TB-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-YD-A9TB-06 7 141478646 141478646 C T TAS2R4 Silent p.L120L 0.29 TCGA-YD-A9TB-06 7 141540820 141540820 G A PRSS37 Silent p.L10L 0.14 TCGA-YD-A9TB-06 7 142919875 142919875 G T TAS2R40 Missense_Mutation p.R235M 0.26 deleterious(0) probably_damaging(0.949) TCGA-YD-A9TB-06 7 149558111 149558111 C T ZNF862 Missense_Mutation p.S621L 0.33 deleterious(0) possibly_damaging(0.755) TCGA-YD-A9TB-06 7 150171298 150171298 G A GIMAP8 Missense_Mutation p.R294K 0.21 tolerated(0.52) benign(0.129) TCGA-YD-A9TB-06 7 151874988 151874988 G A KMT2C Missense_Mutation p.S2517L 0.10 possibly_damaging(0.675) TCGA-YD-A9TB-06 7 18705843 18705843 C T HDAC9 Missense_Mutation p.S492L 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-YD-A9TB-06 7 21698500 21698500 G A DNAH11 Missense_Mutation p.E1732K 0.27 benign(0.301) TCGA-YD-A9TB-06 7 2317787 2317787 G A SNX8 Missense_Mutation p.P83L 0.13 deleterious(0) probably_damaging(0.997) TCGA-YD-A9TB-06 7 2317788 2317788 G A SNX8 Missense_Mutation p.P83S 0.14 deleterious(0) probably_damaging(0.991) TCGA-YD-A9TB-06 7 31692282 31692282 G A CCDC129 Missense_Mutation p.E1018K 0.40 tolerated(0.06) benign(0.001) TCGA-YD-A9TB-06 7 31692288 31692288 C T CCDC129 Missense_Mutation p.P1020S 0.59 tolerated(0.06) possibly_damaging(0.548) TCGA-YD-A9TB-06 7 37264582 37264582 G A ELMO1 Silent p.S201S 0.13 TCGA-YD-A9TB-06 7 37916605 37916605 G A NME8 Silent p.R330R 0.22 TCGA-YD-A9TB-06 7 38725369 38725369 C T FAM183B Silent p.T79T 0.18 TCGA-YD-A9TB-06 7 47892805 47892805 G A PKD1L1 Missense_Mutation p.P1627L 0.10 deleterious(0.01) possibly_damaging(0.845) TCGA-YD-A9TB-06 7 54636808 54636808 C T VSTM2A 3'UTR 0.13 TCGA-YD-A9TB-06 7 5540325 5540325 G A FBXL18 Silent p.A525A 0.14 TCGA-YD-A9TB-06 7 66098379 66098379 C T KCTD7 Missense_Mutation p.P88S 0.50 tolerated(0.58) benign(0.191) TCGA-YD-A9TB-06 7 82585309 82585309 C T PCLO Missense_Mutation p.E1654K 0.16 unknown(0) TCGA-YD-A9TB-06 7 82764256 82764256 T C PCLO Silent p.P870P 0.48 TCGA-YD-A9TB-06 7 92733183 92733183 C T SAMD9 Missense_Mutation p.G743E 0.22 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 7 93516051 93516051 C T TFPI2 3'UTR 0.19 TCGA-YD-A9TB-06 7 98994320 98994320 G A PDAP1 Silent p.L177L 0.48 TCGA-YD-A9TB-06 8 105510196 105510196 G A LRP12 Missense_Mutation p.S195F 0.17 deleterious(0) probably_damaging(0.999) TCGA-YD-A9TB-06 8 121061892 121061892 G T DEPTOR Silent p.L393L 0.20 TCGA-YD-A9TB-06 8 139190778 139190778 C T FAM135B Silent p.R343R 0.63 TCGA-YD-A9TB-06 8 2056620 2056620 C T MYOM2 Silent p.P1014P 0.13 TCGA-YD-A9TB-06 8 32616891 32616891 C T NRG1 Missense_Mutation p.S338F 0.16 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 8 37727918 37727918 C T RAB11FIP1 Intron 0.36 TCGA-YD-A9TB-06 8 39468132 39468132 G A ADAM18 Missense_Mutation p.M143I 0.60 tolerated(1) benign(0.001) TCGA-YD-A9TB-06 8 41836174 41836174 C T KAT6A Silent p.K343K 0.56 TCGA-YD-A9TB-06 8 53079425 53079425 C T ST18 Silent p.R397R 0.17 TCGA-YD-A9TB-06 8 65528505 65528505 C T CYP7B1 Missense_Mutation p.G198E 0.52 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 8 93026815 93026815 C T RUNX1T1 Missense_Mutation p.G165R 0.08 deleterious(0) probably_damaging(0.983) TCGA-YD-A9TB-06 8 95539192 95539192 G A KIAA1429 Missense_Mutation p.S427F 0.21 tolerated(0.66) benign(0.031) TCGA-YD-A9TB-06 9 105767978 105767978 G A CYLC2 3'UTR 0.20 TCGA-YD-A9TB-06 9 130167726 130167726 C T SLC2A8 Missense_Mutation p.P393L 0.10 deleterious(0) probably_damaging(0.992) TCGA-YD-A9TB-06 9 131857679 131857679 G A CRAT Silent p.L626L 0.28 TCGA-YD-A9TB-06 9 135765384 135765384 G A C9orf9 3'UTR 0.24 TCGA-YD-A9TB-06 9 139699177 139699177 G A CCDC183 Intron 0.28 TCGA-YD-A9TB-06 9 39118253 39118253 C T CNTNAP3 Missense_Mutation p.G695E 0.21 deleterious(0.01) possibly_damaging(0.456) TCGA-YD-A9TB-06 9 78799672 78799672 A C PCSK5 Missense_Mutation p.S761R 0.23 deleterious(0.02) benign(0.191) TCGA-YD-A9TB-06 9 91653015 91653015 C T SHC3 Missense_Mutation p.G517R 0.49 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 9 96080672 96080672 C T WNK2 3'Flank 0.15 TCGA-YD-A9TB-06 X 101095483 101095483 G A NXF5 Missense_Mutation p.S229F 0.30 deleterious(0.02) benign(0.028) TCGA-YD-A9TB-06 X 101972111 101972111 G A GPRASP2 Missense_Mutation p.E772K 0.36 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 X 105280658 105280658 C T SERPINA7 Missense_Mutation p.G131E 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-YD-A9TB-06 X 106097443 106097443 C T TBC1D8B Missense_Mutation p.R757C 0.09 deleterious(0.02) benign(0.005) TCGA-YD-A9TB-06 X 107169997 107169997 C T MID2 Silent p.F634F 0.11 TCGA-YD-A9TB-06 X 110406247 110406247 C T PAK3 Silent p.I227I 0.09 TCGA-YD-A9TB-06 X 111155906 111155906 G A TRPC5 Silent p.P171P 0.36 TCGA-YD-A9TB-06 X 111155907 111155907 G A TRPC5 Missense_Mutation p.P171L 0.36 deleterious(0) probably_damaging(1) TCGA-YD-A9TB-06 X 115304404 115304404 G A AGTR2 Missense_Mutation p.E291K 0.25 tolerated(0.93) benign(0.013) TCGA-YD-A9TB-06 X 117521330 117521330 G A WDR44 Missense_Mutation p.G47R 0.10 tolerated_low_confidence(0.24) benign(0.003) TCGA-YD-A9TB-06 X 119660641 119660641 G A CUL4B Missense_Mutation p.P906L 0.39 deleterious(0) benign(0.142) TCGA-YD-A9TB-06 X 120182181 120182181 A T GLUD2 Missense_Mutation p.I215F 0.45 deleterious(0) probably_damaging(0.964) TCGA-YD-A9TB-06 X 122747342 122747342 C T THOC2 Missense_Mutation p.E1529K 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-YD-A9TB-06 X 123176470 123176470 G A STAG2 Missense_Mutation p.R146Q 0.34 tolerated(0.26) possibly_damaging(0.63) TCGA-YD-A9TB-06 X 12906165 12906165 C T TLR7 Silent p.S846S 0.13 TCGA-YD-A9TB-06 X 13613031 13613031 G A EGFL6 Silent p.G88G 0.14 TCGA-YD-A9TB-06 X 13680689 13680689 G A TCEANC Missense_Mutation p.R51K 0.38 tolerated(0.34) benign(0.046) TCGA-YD-A9TB-06 X 142718000 142718000 G A SLITRK4 Missense_Mutation p.P309S 0.16 tolerated(0.18) benign(0.008) TCGA-YD-A9TB-06 X 1475206 1475206 C T IL3RA Missense_Mutation p.R237C 0.15 tolerated(0.06) possibly_damaging(0.505) TCGA-YD-A9TB-06 X 148059907 148059907 A C AFF2 Silent p.S1164S 0.34 TCGA-YD-A9TB-06 X 148798124 148798124 G A MAGEA11 Silent p.G326G 0.42 TCGA-YD-A9TB-06 X 151935443 151935443 G A MAGEA3 Missense_Mutation p.P242S 0.15 deleterious(0.03) benign(0.361) TCGA-YD-A9TB-06 X 151935872 151935872 G A MAGEA3 Missense_Mutation p.P99S 0.41 tolerated(0.14) benign(0.04) TCGA-YD-A9TB-06 X 152158843 152158843 C T PNMA5 Missense_Mutation p.E434K 0.15 tolerated(0.23) benign(0.012) TCGA-YD-A9TB-06 X 152482122 152482122 G A MAGEA1 Silent p.L297L 0.14 TCGA-YD-A9TB-06 X 152610209 152610209 G A ZNF275 Intron 0.37 TCGA-YD-A9TB-06 X 153278528 153278528 C T IRAK1 Silent p.G632G 0.12 TCGA-YD-A9TB-06 X 153296491 153296491 G A MECP2 Missense_Mutation p.A275V 0.39 tolerated(0.06) benign(0.018) TCGA-YD-A9TB-06 X 153558005 153558005 C T TKTL1 Silent p.I586I 0.12 TCGA-YD-A9TB-06 X 153763391 153763391 C T G6PD Missense_Mutation p.M189I 0.13 tolerated(0.05) benign(0.261) TCGA-YD-A9TB-06 X 154005119 154005119 G A DKC1 Missense_Mutation p.E508K 0.11 tolerated_low_confidence(0.4) benign(0.002) TCGA-YD-A9TB-06 X 18622616 18622616 G A CDKL5 Silent p.L524L 0.35 TCGA-YD-A9TB-06 X 23397965 23397965 G A PTCHD1 Silent p.V203V 0.11 TCGA-YD-A9TB-06 X 24544338 24544338 C T PDK3 Nonsense_Mutation p.Q233* 0.15 TCGA-YD-A9TB-06 X 26157763 26157763 G A MAGEB18 Missense_Mutation p.E221K 0.19 tolerated(0.29) benign(0.19) TCGA-YD-A9TB-06 X 26157825 26157825 G A MAGEB18 Silent p.R241R 0.33 TCGA-YD-A9TB-06 X 34961788 34961788 G A FAM47B Silent p.A280A 0.23 TCGA-YD-A9TB-06 X 34962622 34962622 G A FAM47B Silent p.G558G 0.25 TCGA-YD-A9TB-06 X 47102882 47102882 C T USP11 Silent p.A600A 0.08 TCGA-YD-A9TB-06 X 49032244 49032244 C T PRICKLE3 Silent p.S542S 0.12 TCGA-YD-A9TB-06 X 54263821 54263821 G A WNK3 Missense_Mutation p.S1393L 0.12 tolerated(0.37) benign(0.003) TCGA-YD-A9TB-06 X 55479327 55479327 C T MAGEH1 Silent p.L174L 0.14 TCGA-YD-A9TB-06 X 64141801 64141801 C T ZC4H2 Missense_Mutation p.E41K 0.13 deleterious(0) probably_damaging(0.998) TCGA-YD-A9TB-06 X 69669299 69669299 C T DLG3 Missense_Mutation p.P167S 0.29 deleterious(0.04) benign(0.061) TCGA-YD-A9TB-06 X 70596858 70596858 C T TAF1 Silent p.A197A 0.19 TCGA-YD-A9TB-06 X 75396746 75396746 G A PBDC1 Missense_Mutation p.G110R 0.23 tolerated(0.07) benign(0.366) TCGA-YD-A9TB-06 X 75396748 75396748 G A PBDC1 Silent p.G110G 0.23 TCGA-YD-A9TB-06 X 79698944 79698944 G T FAM46D Missense_Mutation p.L302F 0.04 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 10 101372310 101372310 G A SLC25A28 Silent p.N189N 0.28 TCGA-YG-AA3N-01 10 101507112 101507112 G A CUTC Missense_Mutation p.E180K 0.25 tolerated(0.09) possibly_damaging(0.896) TCGA-YG-AA3N-01 10 102049808 102049808 C T PKD2L1 Silent p.L738L 0.28 TCGA-YG-AA3N-01 10 103345226 103345226 G A POLL Silent p.D140D 0.30 TCGA-YG-AA3N-01 10 104173681 104173681 C T PSD Silent p.P466P 0.24 TCGA-YG-AA3N-01 10 105037899 105037899 G A INA Missense_Mutation p.E311K 0.47 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 10 105218494 105218494 G A CALHM1 Silent p.F5F 0.14 TCGA-YG-AA3N-01 10 105362791 105362791 G A SH3PXD2A Silent p.I700I 0.38 TCGA-YG-AA3N-01 10 106907552 106907552 G A SORCS3 Missense_Mutation p.E494K 0.28 tolerated(0.16) benign(0.027) TCGA-YG-AA3N-01 10 107023105 107023105 G A SORCS3 Silent p.K1214K 0.24 TCGA-YG-AA3N-01 10 114057835 114057835 C T TECTB Missense_Mutation p.T227M 0.32 deleterious(0.02) possibly_damaging(0.848) TCGA-YG-AA3N-01 10 115985945 115985945 C T TDRD1 Missense_Mutation p.P1049S 0.32 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3N-01 10 117853267 117853267 C T GFRA1 Missense_Mutation p.D321N 0.20 tolerated(0.39) benign(0.004) TCGA-YG-AA3N-01 10 118704464 118704464 G A KIAA1598 Nonsense_Mutation p.R228* 0.36 TCGA-YG-AA3N-01 10 118960695 118960695 C T KCNK18 Silent p.L83L 0.39 TCGA-YG-AA3N-01 10 118960696 118960696 C T KCNK18 Nonsense_Mutation p.Q84* 0.38 TCGA-YG-AA3N-01 10 119799942 119799942 G A RAB11FIP2 Missense_Mutation p.P163L 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 10 12238172 12238172 C T CDC123 5'UTR 0.42 TCGA-YG-AA3N-01 10 12238173 12238173 C T CDC123 5'UTR 0.41 TCGA-YG-AA3N-01 10 123324084 123324084 G A FGFR2 Missense_Mutation p.S129L 0.55 deleterious(0.05) benign(0.279) TCGA-YG-AA3N-01 10 123843837 123843837 C T TACC2 Missense_Mutation p.P608S 0.20 benign(0.005) TCGA-YG-AA3N-01 10 123970429 123970429 C T TACC2 Silent p.V2163V 0.30 TCGA-YG-AA3N-01 10 123970430 123970430 C T TACC2 Missense_Mutation p.P2164S 0.28 benign(0.099) TCGA-YG-AA3N-01 10 124152732 124152732 C T PLEKHA1 Missense_Mutation p.R6C 0.30 deleterious(0.01) benign(0.078) TCGA-YG-AA3N-01 10 124214318 124214318 C T ARMS2 Silent p.S25S 0.25 TCGA-YG-AA3N-01 10 124352109 124352109 C T DMBT1 Missense_Mutation p.S833L 0.10 deleterious(0) unknown(0) TCGA-YG-AA3N-01 10 124361472 124361472 C T DMBT1 Missense_Mutation p.A1168V 0.55 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 10 124361473 124361473 C T DMBT1 Silent p.A1168A 0.56 TCGA-YG-AA3N-01 10 125539719 125539719 C T CPXM2 Silent p.L314L 0.42 TCGA-YG-AA3N-01 10 12940405 12940405 C T CCDC3 3'UTR 0.24 TCGA-YG-AA3N-01 10 13040431 13040431 C T CCDC3 Silent p.R152R 0.16 TCGA-YG-AA3N-01 10 13222577 13222577 G A MCM10 Silent p.L301L 0.16 TCGA-YG-AA3N-01 10 134161487 134161487 G A LRRC27 Splice_Site p.X185_splice 0.29 TCGA-YG-AA3N-01 10 15255633 15255633 C T FAM171A1 Missense_Mutation p.G652S 0.32 tolerated(0.24) probably_damaging(0.957) TCGA-YG-AA3N-01 10 15573100 15573100 C T ITGA8 Silent p.K977K 0.34 TCGA-YG-AA3N-01 10 15689047 15689047 C T ITGA8 Silent p.L335L 0.22 TCGA-YG-AA3N-01 10 16949577 16949577 G A CUBN Silent p.V2545V 0.14 TCGA-YG-AA3N-01 10 18276565 18276565 C T SLC39A12 Silent p.L418L 0.25 TCGA-YG-AA3N-01 10 20436809 20436809 G A PLXDC2 Missense_Mutation p.R254Q 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-YG-AA3N-01 10 20465927 20465927 G A PLXDC2 Splice_Site p.X295_splice 0.35 TCGA-YG-AA3N-01 10 20506385 20506385 C T PLXDC2 Missense_Mutation p.P385S 0.37 tolerated(0.18) benign(0.001) TCGA-YG-AA3N-01 10 24834980 24834980 C T KIAA1217 Silent p.L1853L 0.43 TCGA-YG-AA3N-01 10 26455108 26455108 G A MYO3A Splice_Site p.X1037_splice 0.26 TCGA-YG-AA3N-01 10 26500921 26500921 G A MYO3A 3'UTR 0.36 TCGA-YG-AA3N-01 10 27499923 27499923 G A ACBD5 Missense_Mutation p.R342C 0.26 tolerated(0.15) benign(0) TCGA-YG-AA3N-01 10 28260243 28260243 C T ARMC4 Splice_Site p.X313_splice 0.33 TCGA-YG-AA3N-01 10 29776239 29776239 G A SVIL Intron 0.29 TCGA-YG-AA3N-01 10 30317745 30317745 T C KIAA1462 Silent p.E444E 0.25 TCGA-YG-AA3N-01 10 31138451 31138451 G A ZNF438 Missense_Mutation p.P295S 0.25 deleterious(0.02) benign(0.091) TCGA-YG-AA3N-01 10 31809607 31809607 C T ZEB1 Silent p.P449P 0.36 TCGA-YG-AA3N-01 10 35484113 35484113 C T CREM Intron 0.29 TCGA-YG-AA3N-01 10 35928906 35928906 G A FZD8 Silent p.F484F 0.21 TCGA-YG-AA3N-01 10 37430854 37430854 G A ANKRD30A Silent p.E287E 0.34 TCGA-YG-AA3N-01 10 38120818 38120818 C T ZNF248 Missense_Mutation p.E489K 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-YG-AA3N-01 10 38121140 38121140 T C ZNF248 Silent p.E381E 0.36 TCGA-YG-AA3N-01 10 38241797 38241797 G A ZNF25 Missense_Mutation p.S210F 0.06 deleterious(0) benign(0.169) TCGA-YG-AA3N-01 10 38343932 38343932 C T ZNF33A Missense_Mutation p.H294Y 0.27 tolerated(0.6) benign(0.002) TCGA-YG-AA3N-01 10 38344833 38344833 C T ZNF33A Missense_Mutation p.S594L 0.27 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 10 43600550 43600550 C T RET Missense_Mutation p.P259L 0.16 tolerated(0.38) benign(0.016) TCGA-YG-AA3N-01 10 45467279 45467279 C T RASSF4 Nonsense_Mutation p.Q41* 0.28 TCGA-YG-AA3N-01 10 45799272 45799272 G A OR13A1 Missense_Mutation p.P200L 0.40 deleterious(0.01) possibly_damaging(0.654) TCGA-YG-AA3N-01 10 45941037 45941037 G A ALOX5 Missense_Mutation p.E643K 0.25 tolerated(0.96) benign(0.028) TCGA-YG-AA3N-01 10 45941260 45941260 C T ALOX5 3'UTR 0.38 TCGA-YG-AA3N-01 10 45953699 45953699 G A MARCH8 Silent p.I288I 0.23 TCGA-YG-AA3N-01 10 47087470 47087470 C T NPY4R Silent p.F229F 0.09 TCGA-YG-AA3N-01 10 48390454 48390454 C T RBP3 Missense_Mutation p.E142K 0.35 deleterious(0.01) probably_damaging(0.952) TCGA-YG-AA3N-01 10 48438716 48438716 G A GDF10 5'UTR 0.19 TCGA-YG-AA3N-01 10 49430457 49430457 G A FRMPD2 Missense_Mutation p.R452W 0.29 deleterious(0) benign(0.025) TCGA-YG-AA3N-01 10 49763576 49763576 C T ARHGAP22 Missense_Mutation p.G85E 0.28 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 10 50311712 50311712 G A VSTM4 Intron 0.30 TCGA-YG-AA3N-01 10 50860047 50860047 C T CHAT Silent p.F543F 0.21 TCGA-YG-AA3N-01 10 50916685 50916685 G A C10orf53 3'UTR 0.32 TCGA-YG-AA3N-01 10 50943215 50943215 C T OGDHL 3'UTR 0.28 TCGA-YG-AA3N-01 10 51769586 51769586 C T AGAP6 Silent p.I567I 0.14 TCGA-YG-AA3N-01 10 52066987 52066987 G A SGMS1 Missense_Mutation p.P386L 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 10 55582220 55582220 G A PCDH15 Missense_Mutation p.P1758S 0.50 tolerated_low_confidence(0.41) unknown(0) TCGA-YG-AA3N-01 10 61829716 61829716 C T ANK3 Silent p.G3641G 0.32 TCGA-YG-AA3N-01 10 61830330 61830330 G A ANK3 Nonsense_Mutation p.Q3437* 0.22 TCGA-YG-AA3N-01 10 61832883 61832883 C T ANK3 Missense_Mutation p.E2586K 0.24 probably_damaging(0.956) TCGA-YG-AA3N-01 10 61833091 61833091 G A ANK3 Silent p.S2516S 0.34 TCGA-YG-AA3N-01 10 61835251 61835251 G A ANK3 Silent p.S1796S 0.30 TCGA-YG-AA3N-01 10 61835477 61835477 G A ANK3 Missense_Mutation p.S1721F 0.21 probably_damaging(0.979) TCGA-YG-AA3N-01 10 62023696 62023696 C T ANK3 Missense_Mutation p.G199E 0.47 probably_damaging(1) TCGA-YG-AA3N-01 10 64430040 64430040 G A ZNF365 Nonsense_Mutation p.W456* 0.21 TCGA-YG-AA3N-01 10 68040237 68040237 C T CTNNA3 Missense_Mutation p.M625I 0.28 deleterious(0) unknown(0) TCGA-YG-AA3N-01 10 69366766 69366766 C T CTNNA3 Silent p.R47R 0.25 TCGA-YG-AA3N-01 10 69797902 69797902 G A HERC4 Silent p.I137I 0.20 TCGA-YG-AA3N-01 10 70248375 70248375 A T SLC25A16 Missense_Mutation p.F208I 0.22 tolerated(0.07) benign(0.329) TCGA-YG-AA3N-01 10 70406692 70406692 C T TET1 Silent p.F1402F 0.28 TCGA-YG-AA3N-01 10 72307181 72307181 C T PALD1 Silent p.I747I 0.42 TCGA-YG-AA3N-01 10 75157012 75157012 C A ANXA7 Nonsense_Mutation p.G94* 0.33 TCGA-YG-AA3N-01 10 75157013 75157013 A T ANXA7 Missense_Mutation p.F93L 0.36 tolerated(0.6) benign(0) TCGA-YG-AA3N-01 10 7614336 7614336 C T ITIH5 Intron 0.29 TCGA-YG-AA3N-01 10 81056494 81056494 C T ZMIZ1 Intron 0.24 TCGA-YG-AA3N-01 10 81056495 81056495 C T ZMIZ1 Intron 0.24 TCGA-YG-AA3N-01 10 81192345 81192345 T A ZCCHC24 Missense_Mutation p.N139I 0.29 tolerated(0.07) possibly_damaging(0.796) TCGA-YG-AA3N-01 10 82098253 82098253 C T DYDC1 Silent p.V158V 0.36 TCGA-YG-AA3N-01 10 82098315 82098315 C T DYDC1 Missense_Mutation p.D138N 0.26 tolerated(0.1) benign(0.287) TCGA-YG-AA3N-01 10 84745020 84745020 G A NRG3 Missense_Mutation p.E584K 0.34 tolerated(0.06) possibly_damaging(0.763) TCGA-YG-AA3N-01 10 84745329 84745329 G A NRG3 Missense_Mutation p.E687K 0.26 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-YG-AA3N-01 10 85982302 85982302 G A LRIT2 Missense_Mutation p.H343Y 0.27 tolerated(0.47) benign(0.008) TCGA-YG-AA3N-01 10 89475601 89475601 G A PAPSS2 Splice_Site p.X289_splice 0.32 TCGA-YG-AA3N-01 10 90122432 90122432 G A RNLS Nonsense_Mutation p.R193* 0.33 TCGA-YG-AA3N-01 10 90524290 90524290 G A LIPN Missense_Mutation p.G117E 0.10 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 10 90573004 90573004 G A LIPM Missense_Mutation p.R139Q 0.24 tolerated(0.09) benign(0.292) TCGA-YG-AA3N-01 10 91528611 91528611 C T KIF20B Silent p.F1696F 0.31 TCGA-YG-AA3N-01 10 94669312 94669312 C T EXOC6 Missense_Mutation p.S196F 0.37 deleterious(0) possibly_damaging(0.759) TCGA-YG-AA3N-01 10 94715471 94715471 G A EXOC6 Silent p.K591K 0.30 TCGA-YG-AA3N-01 10 95141052 95141052 C T MYOF Silent p.G600G 0.32 TCGA-YG-AA3N-01 10 95372698 95372698 G A PDE6C Silent p.E72E 0.29 TCGA-YG-AA3N-01 10 96234490 96234490 T C TBC1D12 Silent p.F387F 0.39 TCGA-YG-AA3N-01 10 96541737 96541737 C T CYP2C19 Silent p.L268L 0.14 TCGA-YG-AA3N-01 10 99376116 99376116 G A MORN4 Silent p.L115L 0.24 TCGA-YG-AA3N-01 11 101344457 101344457 G A TRPC6 Missense_Mutation p.L598F 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 11 101347073 101347073 G C TRPC6 Missense_Mutation p.T568R 0.29 tolerated(0.23) benign(0.218) TCGA-YG-AA3N-01 11 1023648 1023648 G A MUC6 Silent p.I1129I 0.20 TCGA-YG-AA3N-01 11 102712950 102712950 G A MMP3 Missense_Mutation p.P187L 0.29 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 11 103797782 103797782 C G PDGFD Missense_Mutation p.R282T 0.23 deleterious(0) probably_damaging(0.962) TCGA-YG-AA3N-01 11 105774707 105774707 G A GRIA4 Silent p.Q351Q 0.23 TCGA-YG-AA3N-01 11 10580802 10580802 C T LYVE1 Silent p.K275K 0.37 TCGA-YG-AA3N-01 11 10582313 10582313 G A LYVE1 Silent p.I144I 0.30 TCGA-YG-AA3N-01 11 108382492 108382492 C T EXPH5 Missense_Mutation p.E1248K 0.26 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 11 108383740 108383740 C T EXPH5 Missense_Mutation p.E832K 0.38 tolerated(0.12) benign(0.09) TCGA-YG-AA3N-01 11 111779526 111779526 C T CRYAB Missense_Mutation p.E164K 0.29 deleterious(0.04) possibly_damaging(0.857) TCGA-YG-AA3N-01 11 113264331 113264331 C T ANKK1 Missense_Mutation p.S105F 0.52 deleterious(0.03) probably_damaging(0.986) TCGA-YG-AA3N-01 11 113264332 113264332 C T ANKK1 Silent p.S105S 0.55 TCGA-YG-AA3N-01 11 113287689 113287689 T G DRD2 Missense_Mutation p.N143T 0.33 deleterious(0.01) probably_damaging(0.922) TCGA-YG-AA3N-01 11 113775635 113775635 C T HTR3B 5'UTR 0.25 TCGA-YG-AA3N-01 11 113775641 113775641 G A HTR3B 5'UTR 0.28 TCGA-YG-AA3N-01 11 114168748 114168748 C T NNMT Missense_Mutation p.S77F 0.33 deleterious(0.02) probably_damaging(0.943) TCGA-YG-AA3N-01 11 114168838 114168838 G A NNMT Nonsense_Mutation p.W107* 0.20 TCGA-YG-AA3N-01 11 114400953 114400953 G A NXPE1 Silent p.T117T 0.37 TCGA-YG-AA3N-01 11 114453639 114453639 C T NXPE4 Silent p.E67E 0.30 TCGA-YG-AA3N-01 11 116703556 116703556 G A APOC3 Missense_Mutation p.D86N 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-YG-AA3N-01 11 117387228 117387228 G A DSCAML1 Silent p.I639I 0.33 TCGA-YG-AA3N-01 11 119031618 119031618 G A ABCG4 Silent p.T581T 0.30 TCGA-YG-AA3N-01 11 119059432 119059432 G A PDZD3 Silent p.E381E 0.38 TCGA-YG-AA3N-01 11 119206817 119206817 C T RNF26 Missense_Mutation p.P329S 0.22 tolerated(0.06) possibly_damaging(0.548) TCGA-YG-AA3N-01 11 121023587 121023587 C T TECTA Intron 0.09 TCGA-YG-AA3N-01 11 121058644 121058644 G A TECTA Missense_Mutation p.E2035K 0.30 deleterious(0.04) possibly_damaging(0.604) TCGA-YG-AA3N-01 11 121429325 121429325 G A SORL1 Missense_Mutation p.D897N 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-YG-AA3N-01 11 121498354 121498354 G A SORL1 Missense_Mutation p.G2152E 0.13 deleterious(0.03) possibly_damaging(0.666) TCGA-YG-AA3N-01 11 1215376 1215376 C T MUC5AC RNA 0.26 TCGA-YG-AA3N-01 11 123524612 123524612 C T SCN3B 5'UTR 0.35 TCGA-YG-AA3N-01 11 123756103 123756103 C T TMEM225 Silent p.Q10Q 0.23 TCGA-YG-AA3N-01 11 123811232 123811232 G A OR4D5 Silent p.R303R 0.20 TCGA-YG-AA3N-01 11 123813580 123813580 C T OR6T1 Silent p.R322R 0.12 TCGA-YG-AA3N-01 11 123848160 123848160 G A OR10S1 Missense_Mutation p.S80F 0.42 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 11 123886697 123886697 G A OR10G4 Missense_Mutation p.R139K 0.14 deleterious(0.03) benign(0.04) TCGA-YG-AA3N-01 11 123901230 123901230 C T OR10G8 Silent p.L301L 0.30 TCGA-YG-AA3N-01 11 124120643 124120643 C T OR8G1 Missense_Mutation p.S74F 0.36 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YG-AA3N-01 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.38 tolerated(0.19) benign(0.224) TCGA-YG-AA3N-01 11 124179872 124179872 G A OR8D1 Missense_Mutation p.S264L 0.27 deleterious(0) probably_damaging(0.938) TCGA-YG-AA3N-01 11 124190007 124190007 G A OR8D2 Silent p.L29L 0.32 TCGA-YG-AA3N-01 11 124252961 124252961 G A OR8B2 Silent p.S93S 0.22 TCGA-YG-AA3N-01 11 124252962 124252962 G A OR8B2 Missense_Mutation p.S93F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-YG-AA3N-01 11 124266439 124266439 C T OR8B3 Missense_Mutation p.G270E 0.27 tolerated_low_confidence(0.09) benign(0.132) TCGA-YG-AA3N-01 11 124266440 124266440 C T OR8B3 Missense_Mutation p.G270R 0.28 deleterious_low_confidence(0.02) benign(0.199) TCGA-YG-AA3N-01 11 1271018 1271018 G A MUC5B Missense_Mutation p.R4303K 0.36 benign(0.001) TCGA-YG-AA3N-01 11 1272116 1272116 C T MUC5B Missense_Mutation p.S4669F 0.26 unknown(0) TCGA-YG-AA3N-01 11 130278753 130278753 G A ADAMTS8 Silent p.V611V 0.37 TCGA-YG-AA3N-01 11 132205065 132205065 G A NTM 3'UTR 0.38 TCGA-YG-AA3N-01 11 132290122 132290122 C T OPCML Missense_Mutation p.G335R 0.27 tolerated(0.37) benign(0.239) TCGA-YG-AA3N-01 11 133714411 133714411 C T SPATA19 Missense_Mutation p.R87K 0.34 tolerated(0.27) possibly_damaging(0.567) TCGA-YG-AA3N-01 11 133715324 133715324 C T SPATA19 Nonsense_Mutation p.W6* 0.29 TCGA-YG-AA3N-01 11 133715374 133715374 C T SPATA19 5'UTR 0.40 TCGA-YG-AA3N-01 11 133791102 133791102 C T IGSF9B Missense_Mutation p.E840K 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-YG-AA3N-01 11 133795696 133795696 C T IGSF9B Missense_Mutation p.E658K 0.23 tolerated(0.18) possibly_damaging(0.848) TCGA-YG-AA3N-01 11 134229022 134229022 G A GLB1L2 Silent p.G240G 0.26 TCGA-YG-AA3N-01 11 14276153 14276153 C T SPON1 RNA 0.16 TCGA-YG-AA3N-01 11 14276154 14276154 C T SPON1 RNA 0.13 TCGA-YG-AA3N-01 11 17414552 17414552 G A ABCC8 Missense_Mutation p.R1578C 0.15 deleterious(0) benign(0.339) TCGA-YG-AA3N-01 11 17542903 17542903 C T USH1C Missense_Mutation p.E359K 0.21 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-YG-AA3N-01 11 18195094 18195094 C T MRGPRX4 Silent p.I97I 0.28 TCGA-YG-AA3N-01 11 18955452 18955452 C T MRGPRX1 Missense_Mutation p.A294T 0.23 deleterious(0) probably_damaging(0.977) TCGA-YG-AA3N-01 11 18956355 18956355 C T MRGPRX1 5'UTR 0.24 TCGA-YG-AA3N-01 11 19252353 19252353 G A E2F8 Silent p.P365P 0.40 TCGA-YG-AA3N-01 11 20385721 20385721 G A HTATIP2 Intron 0.07 TCGA-YG-AA3N-01 11 20530067 20530067 C T PRMT3 3'UTR 0.50 TCGA-YG-AA3N-01 11 20530068 20530068 C T PRMT3 3'UTR 0.50 TCGA-YG-AA3N-01 11 20660008 20660008 G A SLC6A5 Missense_Mutation p.G625R 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 11 2606472 2606472 G A KCNQ1 Missense_Mutation p.V355M 0.29 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 11 26581354 26581354 C T MUC15 3'UTR 0.41 TCGA-YG-AA3N-01 11 26586873 26586873 G A MUC15 Missense_Mutation p.P205L 0.25 tolerated(0.2) benign(0.005) TCGA-YG-AA3N-01 11 27390483 27390483 A T LGR4 Missense_Mutation p.F596Y 0.33 tolerated(0.85) possibly_damaging(0.611) TCGA-YG-AA3N-01 11 30033388 30033388 C T KCNA4 Missense_Mutation p.E280K 0.32 tolerated(0.05) benign(0.217) TCGA-YG-AA3N-01 11 3022357 3022357 C T CARS Missense_Mutation p.G828E 0.26 deleterious(0.01) possibly_damaging(0.796) TCGA-YG-AA3N-01 11 30921939 30921939 A G DCDC1 Silent p.P1536P 0.20 TCGA-YG-AA3N-01 11 32610214 32610214 G A EIF3M Missense_Mutation p.E84K 0.32 tolerated(0.92) benign(0.003) TCGA-YG-AA3N-01 11 33565829 33565829 C T KIAA1549L Missense_Mutation p.P610L 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-YG-AA3N-01 11 34991704 34991704 C T PDHX Missense_Mutation p.P279S 0.33 deleterious(0) probably_damaging(0.972) TCGA-YG-AA3N-01 11 35453946 35453946 C T PAMR1 Silent p.K724K 0.32 TCGA-YG-AA3N-01 11 3846260 3846260 C T PGAP2 Missense_Mutation p.S240F 0.29 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 11 4471058 4471058 C T OR52K2 Silent p.F163F 0.31 TCGA-YG-AA3N-01 11 45246443 45246443 G A PRDM11 Missense_Mutation p.G473E 0.30 deleterious_low_confidence(0.05) benign(0.354) TCGA-YG-AA3N-01 11 45950216 45950216 C T GYLTL1B Silent p.T662T 0.37 TCGA-YG-AA3N-01 11 4608559 4608559 G T OR52I2 Nonsense_Mutation p.G173* 0.33 TCGA-YG-AA3N-01 11 46406905 46406905 C T CHRM4 Silent p.T401T 0.40 TCGA-YG-AA3N-01 11 47333280 47333280 C T MADD Intron 0.16 TCGA-YG-AA3N-01 11 47436342 47436342 C T SLC39A13 Silent p.A267A 0.33 TCGA-YG-AA3N-01 11 4790616 4790616 G A OR51F1 Missense_Mutation p.H178Y 0.29 deleterious(0.03) benign(0.309) TCGA-YG-AA3N-01 11 4825002 4825002 G A OR52R1 Silent p.L203L 0.40 TCGA-YG-AA3N-01 11 4825094 4825094 G A OR52R1 Nonsense_Mutation p.Q173* 0.31 TCGA-YG-AA3N-01 11 48266730 48266730 C A OR4X2 Missense_Mutation p.F25L 0.34 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 11 48266732 48266732 T G OR4X2 Missense_Mutation p.L26W 0.33 deleterious(0) probably_damaging(0.928) TCGA-YG-AA3N-01 11 48266949 48266949 C T OR4X2 Silent p.F98F 0.32 TCGA-YG-AA3N-01 11 48510771 48510771 C T OR4A47 Silent p.L143L 0.27 TCGA-YG-AA3N-01 11 48511134 48511134 C T OR4A47 Missense_Mutation p.P264S 0.19 tolerated_low_confidence(0.15) benign(0.027) TCGA-YG-AA3N-01 11 4903798 4903798 C T OR51T1 Silent p.I250I 0.20 TCGA-YG-AA3N-01 11 4903909 4903909 C T OR51T1 Silent p.L287L 0.19 TCGA-YG-AA3N-01 11 4929119 4929119 C T OR51A7 Missense_Mutation p.L174F 0.30 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 11 4929336 4929336 C T OR51A7 Missense_Mutation p.A246V 0.28 tolerated(0.05) possibly_damaging(0.764) TCGA-YG-AA3N-01 11 49974353 49974353 C T OR4C13 Missense_Mutation p.P127S 0.26 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-YG-AA3N-01 11 49974628 49974628 C T OR4C13 Silent p.V218V 0.32 TCGA-YG-AA3N-01 11 5020696 5020696 C T OR51L1 Missense_Mutation p.P162S 0.14 deleterious(0.03) benign(0.303) TCGA-YG-AA3N-01 11 5080387 5080387 G A OR52E2 Silent p.F157F 0.44 TCGA-YG-AA3N-01 11 5080769 5080769 C T OR52E2 Missense_Mutation p.G30D 0.33 deleterious(0) possibly_damaging(0.524) TCGA-YG-AA3N-01 11 5142719 5142719 C T OR52A4 RNA 0.25 TCGA-YG-AA3N-01 11 5142720 5142720 C T OR52A4 RNA 0.25 TCGA-YG-AA3N-01 11 5248231 5248231 C T HBB Silent p.E7E 0.31 TCGA-YG-AA3N-01 11 5345020 5345020 G A OR51B2 Missense_Mutation p.H170Y 0.40 deleterious(0.02) benign(0.111) TCGA-YG-AA3N-01 11 5411379 5411379 C T OR51M1 Nonsense_Mutation p.Q251* 0.35 TCGA-YG-AA3N-01 11 5443851 5443851 G A OR51Q1 Missense_Mutation p.E141K 0.30 tolerated(0.65) benign(0.003) TCGA-YG-AA3N-01 11 5475091 5475091 G A OR51I2 Missense_Mutation p.A125T 0.30 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 11 55038139 55038139 G A TRIM48 3'UTR 0.23 TCGA-YG-AA3N-01 11 5510283 5510283 C T OR52D1 Missense_Mutation p.S116L 0.34 deleterious(0.03) benign(0.005) TCGA-YG-AA3N-01 11 5510418 5510418 C T OR52D1 Missense_Mutation p.P161L 0.32 deleterious(0.02) benign(0.094) TCGA-YG-AA3N-01 11 55371621 55371621 G A OR4C11 Missense_Mutation p.P77S 0.17 deleterious(0.01) possibly_damaging(0.696) TCGA-YG-AA3N-01 11 55540939 55540939 G A OR5D13 Missense_Mutation p.S9N 0.12 deleterious(0.03) benign(0.167) TCGA-YG-AA3N-01 11 55563504 55563504 C T OR5D14 Missense_Mutation p.P158L 0.22 deleterious(0) benign(0.065) TCGA-YG-AA3N-01 11 55579578 55579578 G A OR5L1 Missense_Mutation p.M212I 0.22 tolerated(0.26) benign(0.001) TCGA-YG-AA3N-01 11 55890334 55890334 C T OR8H3 Silent p.S162S 0.28 TCGA-YG-AA3N-01 11 55890465 55890465 C T OR8H3 Missense_Mutation p.T206I 0.29 tolerated(0.12) benign(0.16) TCGA-YG-AA3N-01 11 55927066 55927066 G A OR8K5 Missense_Mutation p.S243F 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3N-01 11 56114089 56114089 C T OR8K1 Missense_Mutation p.S192F 0.28 deleterious_low_confidence(0.05) benign(0.199) TCGA-YG-AA3N-01 11 56127831 56127831 C T OR8J1 Silent p.L37L 0.36 TCGA-YG-AA3N-01 11 56949357 56949357 C T LRRC55 5'UTR 0.28 TCGA-YG-AA3N-01 11 57310500 57310500 G A SMTNL1 Missense_Mutation p.E147K 0.31 tolerated(0.12) benign(0.012) TCGA-YG-AA3N-01 11 57886786 57886786 C T OR9I1 Missense_Mutation p.G44E 0.27 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 11 57947230 57947230 C T OR9Q1 Missense_Mutation p.T105I 0.30 tolerated(0.41) probably_damaging(0.999) TCGA-YG-AA3N-01 11 58170010 58170010 C T OR5B3 Silent p.R291R 0.30 TCGA-YG-AA3N-01 11 58715388 58715388 G A GLYATL1 Missense_Mutation p.V77M 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-YG-AA3N-01 11 5878131 5878131 G A OR52E8 Missense_Mutation p.R268C 0.29 deleterious(0.03) benign(0.248) TCGA-YG-AA3N-01 11 59131951 59131951 T G OR5AN1 Missense_Mutation p.I7S 0.27 tolerated(0.47) benign(0.003) TCGA-YG-AA3N-01 11 59132609 59132609 C T OR5AN1 Silent p.I226I 0.33 TCGA-YG-AA3N-01 11 59189538 59189538 C T OR5A2 Missense_Mutation p.E297K 0.39 deleterious(0.02) benign(0.12) TCGA-YG-AA3N-01 11 59210680 59210680 C T OR5A1 Silent p.T13T 0.24 TCGA-YG-AA3N-01 11 59271052 59271052 G A OR4D11 Missense_Mutation p.E2K 0.19 tolerated(0.07) benign(0.009) TCGA-YG-AA3N-01 11 5969216 5969216 G A OR56A3 Missense_Mutation p.D214N 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 11 59837073 59837073 C T MS4A3 Silent p.L180L 0.30 TCGA-YG-AA3N-01 11 60184067 60184067 C T MS4A14 Silent p.S575S 0.37 TCGA-YG-AA3N-01 11 60557982 60557982 G A MS4A10 Silent p.K58K 0.19 TCGA-YG-AA3N-01 11 61511118 61511118 C T DAGLA Silent p.T762T 0.41 TCGA-YG-AA3N-01 11 62288667 62288667 G A AHNAK Missense_Mutation p.P4408S 0.32 probably_damaging(0.999) TCGA-YG-AA3N-01 11 62298413 62298413 C T AHNAK Missense_Mutation p.G1159E 0.38 probably_damaging(0.962) TCGA-YG-AA3N-01 11 62375237 62375237 G A EML3 Silent p.I421I 0.33 TCGA-YG-AA3N-01 11 62519526 62519526 G A ZBTB3 3'UTR 0.22 TCGA-YG-AA3N-01 11 62574968 62574968 G A STX5 Silent p.F347F 0.34 TCGA-YG-AA3N-01 11 62951205 62951205 C T SLC22A25 Silent p.R305R 0.31 TCGA-YG-AA3N-01 11 63174088 63174088 C T SLC22A9 Missense_Mutation p.P398L 0.25 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 11 63320472 63320472 C T HRASLS2 Silent p.G151G 0.35 TCGA-YG-AA3N-01 11 64054277 64054277 C T GPR137 Missense_Mutation p.P152L 0.26 tolerated(0.4) benign(0.018) TCGA-YG-AA3N-01 11 64082305 64082305 C T ESRRA Missense_Mutation p.L222F 0.41 tolerated(0.06) benign(0.002) TCGA-YG-AA3N-01 11 64112086 64112086 G A CCDC88B Silent p.R691R 0.43 TCGA-YG-AA3N-01 11 64112087 64112087 G A CCDC88B Missense_Mutation p.D692N 0.47 tolerated(0.23) benign(0.008) TCGA-YG-AA3N-01 11 64361170 64361170 G A SLC22A12 Missense_Mutation p.S242N 0.22 deleterious(0) possibly_damaging(0.85) TCGA-YG-AA3N-01 11 64522302 64522302 C T PYGM Missense_Mutation p.E288K 0.54 tolerated(0.09) benign(0.428) TCGA-YG-AA3N-01 11 64597356 64597356 C T CDC42BPG Missense_Mutation p.G1185E 0.14 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 11 64679690 64679690 C T ATG2A Silent p.K318K 0.25 TCGA-YG-AA3N-01 11 64854410 64854410 C T ZFPL1 Silent p.T164T 0.33 TCGA-YG-AA3N-01 11 65294315 65294315 C T SCYL1 Missense_Mutation p.R222W 0.38 deleterious(0) probably_damaging(0.935) TCGA-YG-AA3N-01 11 65481133 65481133 C T KAT5 Missense_Mutation p.P204S 0.22 tolerated(0.3) benign(0.281) TCGA-YG-AA3N-01 11 66321598 66321598 G A CTD-3074O7.2 3'Flank 0.25 TCGA-YG-AA3N-01 11 6647463 6647463 G A DCHS1 Silent p.F2171F 0.50 TCGA-YG-AA3N-01 11 6647849 6647849 C T DCHS1 Missense_Mutation p.G2100R 0.33 tolerated(0.15) benign(0.223) TCGA-YG-AA3N-01 11 67219869 67219869 G A GPR152 Silent p.F109F 0.20 TCGA-YG-AA3N-01 11 6898459 6898459 C T OR10A4 Missense_Mutation p.S194F 0.39 tolerated(0.78) possibly_damaging(0.703) TCGA-YG-AA3N-01 11 69462901 69462901 G A CCND1 Silent p.K238K 0.33 TCGA-YG-AA3N-01 11 69588143 69588143 C T FGF4 Silent p.G185G 0.40 TCGA-YG-AA3N-01 11 70332098 70332098 G A SHANK2 Missense_Mutation p.L1435F 0.29 deleterious(0.02) benign(0.017) TCGA-YG-AA3N-01 11 70332481 70332481 G A SHANK2 Missense_Mutation p.S1307F 0.30 deleterious(0) possibly_damaging(0.485) TCGA-YG-AA3N-01 11 7064875 7064875 C T NLRP14 Nonsense_Mutation p.R540* 0.31 TCGA-YG-AA3N-01 11 73071451 73071451 C T ARHGEF17 Silent p.F1431F 0.33 TCGA-YG-AA3N-01 11 73103396 73103396 C T RELT Missense_Mutation p.P170S 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 11 73388894 73388894 G A RAB6A 3'UTR 0.21 TCGA-YG-AA3N-01 11 75439964 75439964 C T MOGAT2 Silent p.L260L 0.33 TCGA-YG-AA3N-01 11 76858912 76858912 G A MYO7A Silent p.V67V 0.35 TCGA-YG-AA3N-01 11 7817653 7817653 G A OR5P2 Silent p.P279P 0.29 TCGA-YG-AA3N-01 11 7847467 7847467 G A OR5P3 Missense_Mutation p.S18F 0.28 deleterious(0) benign(0.163) TCGA-YG-AA3N-01 11 792410 792410 G A SLC25A22 Silent p.N212N 0.27 TCGA-YG-AA3N-01 11 7981841 7981841 C T NLRP10 Missense_Mutation p.G440S 0.24 deleterious(0.04) benign(0.367) TCGA-YG-AA3N-01 11 7984800 7984800 C T NLRP10 Missense_Mutation p.M81I 0.29 tolerated(0.61) benign(0.062) TCGA-YG-AA3N-01 11 85445649 85445649 C T SYTL2 Missense_Mutation p.M240I 0.34 tolerated(0.17) benign(0.002) TCGA-YG-AA3N-01 11 85623705 85623705 C A CCDC83 Missense_Mutation p.H270N 0.06 tolerated_low_confidence(0.31) benign(0.015) TCGA-YG-AA3N-01 11 85685776 85685776 G A PICALM Missense_Mutation p.P640L 0.27 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 11 85685777 85685777 G A PICALM Missense_Mutation p.P640S 0.27 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 11 86048439 86048439 C T C11orf73 Missense_Mutation p.P96L 0.32 tolerated(0.12) probably_damaging(0.926) TCGA-YG-AA3N-01 11 88583225 88583225 C T GRM5 Missense_Mutation p.E254K 0.16 deleterious(0.01) possibly_damaging(0.782) TCGA-YG-AA3N-01 11 92085992 92085992 G A FAT3 Missense_Mutation p.M238I 0.33 probably_damaging(0.997) TCGA-YG-AA3N-01 11 92534874 92534874 G A FAT3 Missense_Mutation p.G2899R 0.15 probably_damaging(0.998) TCGA-YG-AA3N-01 11 92616244 92616244 C T FAT3 Missense_Mutation p.P4208S 0.38 benign(0.021) TCGA-YG-AA3N-01 11 92616245 92616245 C T FAT3 Missense_Mutation p.P4208L 0.36 benign(0) TCGA-YG-AA3N-01 11 93212429 93212429 G A SMCO4 5'UTR 0.55 TCGA-YG-AA3N-01 11 93839223 93839223 G A HEPHL1 Nonsense_Mutation p.W991* 0.38 TCGA-YG-AA3N-01 11 94554722 94554722 C G AMOTL1 Nonsense_Mutation p.S383* 0.35 TCGA-YG-AA3N-01 11 9867118 9867118 G A SBF2 Missense_Mutation p.S1035F 0.13 deleterious(0) possibly_damaging(0.726) TCGA-YG-AA3N-01 11 99715862 99715862 C T CNTN5 Missense_Mutation p.R149C 0.21 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 12 100377919 100377919 C T ANKS1B Missense_Mutation p.G33S 0.45 tolerated(0.76) benign(0.007) TCGA-YG-AA3N-01 12 101381317 101381317 G A ANO4 Silent p.R166R 0.31 TCGA-YG-AA3N-01 12 101472981 101472981 C T ANO4 Silent p.F406F 0.30 TCGA-YG-AA3N-01 12 101581272 101581272 C T SLC5A8 Silent p.V285V 0.30 TCGA-YG-AA3N-01 12 101581281 101581281 G A SLC5A8 Silent p.I282I 0.42 TCGA-YG-AA3N-01 12 102811714 102811714 G A IGF1 Missense_Mutation p.P157L 0.32 tolerated(0.07) benign(0.003) TCGA-YG-AA3N-01 12 104077062 104077062 G A STAB2 Missense_Mutation p.G962E 0.23 tolerated(0.17) benign(0.01) TCGA-YG-AA3N-01 12 104142843 104142843 G A STAB2 Missense_Mutation p.G2116E 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 12 109294321 109294321 T G DAO 3'UTR 0.42 TCGA-YG-AA3N-01 12 10959514 10959514 C T TAS2R8 Silent p.L22L 0.23 TCGA-YG-AA3N-01 12 109945437 109945437 G A UBE3B Missense_Mutation p.G507R 0.32 deleterious(0.04) possibly_damaging(0.704) TCGA-YG-AA3N-01 12 110874424 110874424 G A ARPC3 Missense_Mutation p.P106L 0.30 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 12 111758081 111758081 G A CUX2 Silent p.Q756Q 0.38 TCGA-YG-AA3N-01 12 112227679 112227679 G A ALDH2 Missense_Mutation p.G165R 0.22 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 112477094 112477094 C T NAA25 Missense_Mutation p.R863Q 0.19 tolerated(0.07) benign(0.015) TCGA-YG-AA3N-01 12 112642350 112642350 G A HECTD4 Missense_Mutation p.P2591S 0.24 probably_damaging(1) TCGA-YG-AA3N-01 12 113400544 113400544 G A OAS3 Missense_Mutation p.E641K 0.35 deleterious(0) probably_damaging(0.98) TCGA-YG-AA3N-01 12 113744364 113744364 G A SLC8B1 Silent p.F476F 0.31 TCGA-YG-AA3N-01 12 11420741 11420741 C T PRB3 Missense_Mutation p.G148R 0.18 tolerated(0.07) unknown(0) TCGA-YG-AA3N-01 12 114386754 114386754 C T RBM19 Missense_Mutation p.R387Q 0.33 tolerated(0.18) benign(0.029) TCGA-YG-AA3N-01 12 117696881 117696881 G A NOS1 Missense_Mutation p.L808F 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-YG-AA3N-01 12 117914273 117914273 G A KSR2 Missense_Mutation p.L860F 0.27 tolerated(1) benign(0.005) TCGA-YG-AA3N-01 12 117962781 117962781 C T KSR2 Missense_Mutation p.D699N 0.46 tolerated(0.96) benign(0.02) TCGA-YG-AA3N-01 12 118198891 118198891 C T KSR2 Missense_Mutation p.G304E 0.29 tolerated(0.41) possibly_damaging(0.766) TCGA-YG-AA3N-01 12 118577321 118577321 C T PEBP1 Missense_Mutation p.S104F 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-YG-AA3N-01 12 124315140 124315140 C T DNAH10 Missense_Mutation p.T1362I 0.17 benign(0.017) TCGA-YG-AA3N-01 12 124317670 124317670 G A DNAH10 Missense_Mutation p.E1401K 0.40 benign(0.091) TCGA-YG-AA3N-01 12 125435063 125435063 G A DHX37 Missense_Mutation p.A1006V 0.30 tolerated(0.71) benign(0.01) TCGA-YG-AA3N-01 12 126139066 126139066 C T TMEM132B Missense_Mutation p.S1016F 0.38 deleterious(0) possibly_damaging(0.632) TCGA-YG-AA3N-01 12 126139069 126139069 C T TMEM132B Missense_Mutation p.S1017L 0.27 deleterious(0.02) benign(0.104) TCGA-YG-AA3N-01 12 130855912 130855912 C T PIWIL1 Intron 0.45 TCGA-YG-AA3N-01 12 131593416 131593416 G A GPR133 Missense_Mutation p.G679R 0.53 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 13828684 13828684 C T GRIN2B Missense_Mutation p.E374K 0.23 deleterious(0) benign(0.019) TCGA-YG-AA3N-01 12 13906490 13906490 G A GRIN2B Silent p.I257I 0.25 TCGA-YG-AA3N-01 12 14613781 14613781 C T ATF7IP Silent p.S837S 0.24 TCGA-YG-AA3N-01 12 18747451 18747451 C T PIK3C2G Silent p.F1304F 0.32 TCGA-YG-AA3N-01 12 20790059 20790059 C T PDE3A Missense_Mutation p.P676L 0.28 tolerated(0.27) possibly_damaging(0.88) TCGA-YG-AA3N-01 12 21011428 21011428 G A LST3 Silent p.P94P 0.23 TCGA-YG-AA3N-01 12 21175843 21175843 C A SLCO1B7 Missense_Mutation p.R134S 0.28 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 21353449 21353449 C T SLCO1B1 Silent p.F326F 0.23 TCGA-YG-AA3N-01 12 21422553 21422553 C T SLCO1A2 Missense_Mutation p.E648K 0.29 tolerated(0.14) benign(0.009) TCGA-YG-AA3N-01 12 21487551 21487551 G A SLCO1A2 Missense_Mutation p.H11Y 0.23 tolerated(0.09) possibly_damaging(0.543) TCGA-YG-AA3N-01 12 24736407 24736407 C T LINC00477 RNA 0.42 TCGA-YG-AA3N-01 12 25311443 25311443 C T CASC1 Missense_Mutation p.R54Q 0.17 tolerated(0.11) benign(0.152) TCGA-YG-AA3N-01 12 25311484 25311484 C T CASC1 Silent p.L40L 0.18 TCGA-YG-AA3N-01 12 2786954 2786954 G A CACNA1C Missense_Mutation p.G1719E 0.39 tolerated(0.06) benign(0.263) TCGA-YG-AA3N-01 12 2797873 2797873 C T CACNA1C Silent p.S2063S 0.39 TCGA-YG-AA3N-01 12 32136924 32136924 C T KIAA1551 Missense_Mutation p.S1012L 0.58 tolerated(0.19) possibly_damaging(0.535) TCGA-YG-AA3N-01 12 32481041 32481041 G A BICD1 Missense_Mutation p.G551E 0.26 tolerated(0.05) probably_damaging(0.968) TCGA-YG-AA3N-01 12 33003895 33003895 G A PKP2 Missense_Mutation p.R395C 0.13 deleterious(0.03) possibly_damaging(0.893) TCGA-YG-AA3N-01 12 33532798 33532798 T A SYT10 Missense_Mutation p.K490I 0.25 deleterious(0) benign(0.258) TCGA-YG-AA3N-01 12 33579239 33579239 C T SYT10 Missense_Mutation p.E115K 0.25 tolerated(0.6) probably_damaging(0.989) TCGA-YG-AA3N-01 12 344317 344317 C T SLC6A13 Missense_Mutation p.G257E 0.23 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3N-01 12 344375 344375 C T SLC6A13 Missense_Mutation p.A238T 0.30 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 12 40076750 40076750 A C C12orf40 Missense_Mutation p.T342P 0.32 deleterious(0) possibly_damaging(0.767) TCGA-YG-AA3N-01 12 43945634 43945634 C T ADAMTS20 Missense_Mutation p.E31K 0.39 tolerated(0.3) benign(0.365) TCGA-YG-AA3N-01 12 46591736 46591736 G A SLC38A1 Silent p.F410F 0.39 TCGA-YG-AA3N-01 12 48104501 48104501 C T ENDOU 3'UTR 0.35 TCGA-YG-AA3N-01 12 48135438 48135438 C T RAPGEF3 Intron 0.38 TCGA-YG-AA3N-01 12 48375748 48375748 G A COL2A1 Intron 0.38 TCGA-YG-AA3N-01 12 4881615 4881615 G A GALNT8 Missense_Mutation p.G589E 0.31 tolerated(0.26) benign(0.011) TCGA-YG-AA3N-01 12 48919962 48919962 C T OR8S1 Missense_Mutation p.S183F 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-YG-AA3N-01 12 49251927 49251927 G A RND1 Missense_Mutation p.S184F 0.32 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3N-01 12 49420471 49420471 G A KMT2D Missense_Mutation p.S5093F 0.28 unknown(0) TCGA-YG-AA3N-01 12 49485085 49485085 C T DHH Missense_Mutation p.E131K 0.38 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 50232662 50232662 G A BCDIN3D Missense_Mutation p.P124L 0.27 deleterious(0) benign(0.009) TCGA-YG-AA3N-01 12 50867941 50867941 G T LARP4 Silent p.V609V 0.39 TCGA-YG-AA3N-01 12 51318904 51318904 G A METTL7A Nonsense_Mutation p.W28* 0.28 TCGA-YG-AA3N-01 12 51856237 51856237 C T SLC4A8 Silent p.S415S 0.22 TCGA-YG-AA3N-01 12 52100441 52100441 G A SCN8A Missense_Mutation p.R526K 0.21 tolerated(0.26) benign(0.042) TCGA-YG-AA3N-01 12 52884403 52884403 C T KRT6A Missense_Mutation p.E343K 0.32 deleterious(0.01) possibly_damaging(0.643) TCGA-YG-AA3N-01 12 52886683 52886683 C T KRT6A Missense_Mutation p.G97E 0.20 tolerated(0.07) unknown(0) TCGA-YG-AA3N-01 12 52979706 52979706 G A KRT72 3'UTR 0.40 TCGA-YG-AA3N-01 12 52994823 52994823 G A KRT72 Silent p.S138S 0.22 TCGA-YG-AA3N-01 12 53002094 53002094 C T KRT73 Silent p.G503G 0.44 TCGA-YG-AA3N-01 12 53517951 53517951 C T SOAT2 3'UTR 0.17 TCGA-YG-AA3N-01 12 53819634 53819634 C T AMHR2 Silent p.I261I 0.24 TCGA-YG-AA3N-01 12 54422700 54422700 A T HOXC6 Missense_Mutation p.H132L 0.30 tolerated(0.68) probably_damaging(0.991) TCGA-YG-AA3N-01 12 54798490 54798490 G A ITGA5 Missense_Mutation p.P472S 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 12 54974740 54974740 C T PPP1R1A Silent p.K166K 0.31 TCGA-YG-AA3N-01 12 55715093 55715093 C T OR6C1 Missense_Mutation p.S237F 0.37 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-YG-AA3N-01 12 55726375 55726375 C T OR6C3 Silent p.A297A 0.30 TCGA-YG-AA3N-01 12 55759496 55759496 C T OR6C75 Missense_Mutation p.A201V 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 55759752 55759752 C T OR6C75 Silent p.F286F 0.31 TCGA-YG-AA3N-01 12 55846307 55846307 C T OR6C2 Missense_Mutation p.L104F 0.27 tolerated_low_confidence(0.11) benign(0.143) TCGA-YG-AA3N-01 12 55863806 55863806 C T OR6C70 Silent p.G39G 0.27 TCGA-YG-AA3N-01 12 56031605 56031605 C T OR10P1 Silent p.R310R 0.31 TCGA-YG-AA3N-01 12 56075782 56075782 G A METTL7B Missense_Mutation p.G82R 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-YG-AA3N-01 12 56522494 56522494 G A ESYT1 Splice_Site p.X130_splice 0.14 TCGA-YG-AA3N-01 12 56667508 56667508 G A CS Silent p.L365L 0.28 TCGA-YG-AA3N-01 12 5672705 5672705 C T ANO2 Silent p.V919V 0.07 TCGA-YG-AA3N-01 12 56811965 56811965 G A TIMELESS Missense_Mutation p.A1136V 0.25 deleterious_low_confidence(0.04) benign(0.328) TCGA-YG-AA3N-01 12 57850392 57850392 C T INHBE Nonsense_Mutation p.Q272* 0.28 TCGA-YG-AA3N-01 12 57865254 57865254 G A GLI1 Missense_Mutation p.E911K 0.27 tolerated(0.11) benign(0.184) TCGA-YG-AA3N-01 12 57926800 57926800 G A DCTN2 Silent p.P252P 0.24 TCGA-YG-AA3N-01 12 58002327 58002327 C T DTX3 Missense_Mutation p.R259W 0.38 deleterious(0.01) benign(0.085) TCGA-YG-AA3N-01 12 6058285 6058285 C T VWF Missense_Mutation p.E2780K 0.32 tolerated(0.13) possibly_damaging(0.636) TCGA-YG-AA3N-01 12 6058286 6058286 C T VWF Silent p.T2779T 0.32 TCGA-YG-AA3N-01 12 63195625 63195625 C T PPM1H Missense_Mutation p.G243R 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 12 63543830 63543830 C T AVPR1A Missense_Mutation p.G263S 0.30 tolerated(0.26) benign(0.021) TCGA-YG-AA3N-01 12 65134401 65134401 T C GNS Missense_Mutation p.N287S 0.14 tolerated(0.43) benign(0.009) TCGA-YG-AA3N-01 12 66641917 66641917 C T IRAK3 Missense_Mutation p.S586F 0.16 tolerated_low_confidence(0.74) benign(0.004) TCGA-YG-AA3N-01 12 6924052 6924052 G A CD4 Silent p.K167K 0.35 TCGA-YG-AA3N-01 12 70004343 70004343 C T LRRC10 Silent p.Q92Q 0.25 TCGA-YG-AA3N-01 12 70913974 70913974 C T PTPRB 3'UTR 0.40 TCGA-YG-AA3N-01 12 70928658 70928658 C T PTPRB Silent p.E2053E 0.28 TCGA-YG-AA3N-01 12 70988398 70988398 C T PTPRB Missense_Mutation p.M455I 0.22 tolerated(0.37) benign(0.003) TCGA-YG-AA3N-01 12 71286745 71286745 C T PTPRR Missense_Mutation p.G24E 0.24 deleterious_low_confidence(0.01) benign(0.091) TCGA-YG-AA3N-01 12 7177206 7177206 G A C1S Missense_Mutation p.G440R 0.31 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 12 72092901 72092901 C T TMEM19 Intron 0.27 TCGA-YG-AA3N-01 12 7354848 7354848 C T PEX5 Silent p.F233F 0.21 TCGA-YG-AA3N-01 12 75444951 75444951 C T KCNC2 Silent p.T278T 0.25 TCGA-YG-AA3N-01 12 7639347 7639347 G A CD163 Missense_Mutation p.H736Y 0.28 tolerated(0.17) benign(0.068) TCGA-YG-AA3N-01 12 7639540 7639540 A G CD163 Missense_Mutation p.L698S 0.35 tolerated(1) benign(0.004) TCGA-YG-AA3N-01 12 78583818 78583818 C T NAV3 Missense_Mutation p.P2015L 0.28 deleterious(0) benign(0.407) TCGA-YG-AA3N-01 12 7867913 7867913 G A DPPA3 Missense_Mutation p.E73K 0.25 tolerated(0.38) possibly_damaging(0.452) TCGA-YG-AA3N-01 12 80714341 80714341 C T OTOGL Silent p.G1305G 0.29 TCGA-YG-AA3N-01 12 80752071 80752071 G A OTOGL Silent p.G2012G 0.29 TCGA-YG-AA3N-01 12 80752072 80752072 G A OTOGL Missense_Mutation p.E2013K 0.29 deleterious(0) possibly_damaging(0.817) TCGA-YG-AA3N-01 12 81624865 81624865 G A ACSS3 Missense_Mutation p.G515E 0.22 deleterious(0.01) possibly_damaging(0.843) TCGA-YG-AA3N-01 12 82796895 82796895 A T METTL25 Missense_Mutation p.E422V 0.36 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 85515476 85515476 G A LRRIQ1 Missense_Mutation p.D1127N 0.26 tolerated(1) benign(0) TCGA-YG-AA3N-01 12 85521720 85521720 C T LRRIQ1 Missense_Mutation p.S1373F 0.06 tolerated(0.73) benign(0.001) TCGA-YG-AA3N-01 12 86199517 86199517 G A RASSF9 Missense_Mutation p.P91S 0.11 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 12 86373557 86373557 G A MGAT4C Missense_Mutation p.S316L 0.16 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 12 8687200 8687200 C T CLEC4E 3'UTR 0.38 TCGA-YG-AA3N-01 12 94965469 94965469 G A TMCC3 Silent p.L392L 0.35 TCGA-YG-AA3N-01 12 96104339 96104339 G A NTN4 Missense_Mutation p.R354C 0.32 tolerated(0.05) possibly_damaging(0.832) TCGA-YG-AA3N-01 12 97051785 97051785 G A C12orf55 Nonsense_Mutation p.W1742* 0.51 TCGA-YG-AA3N-01 12 97136260 97136260 C T C12orf55 Missense_Mutation p.S2372F 0.34 tolerated(0.07) benign(0.183) TCGA-YG-AA3N-01 12 97137828 97137828 C T C12orf55 Missense_Mutation p.R2530C 0.19 tolerated(0.19) benign(0.011) TCGA-YG-AA3N-01 12 97957599 97957599 C T MIR135A2 RNA 0.31 TCGA-YG-AA3N-01 13 101759960 101759960 C T NALCN Silent p.R819R 0.31 TCGA-YG-AA3N-01 13 101760077 101760077 C T NALCN Missense_Mutation p.E810K 0.21 tolerated(0.4) benign(0.269) TCGA-YG-AA3N-01 13 106119432 106119432 C T DAOA Silent p.F25F 0.22 TCGA-YG-AA3N-01 13 108861798 108861798 A T LIG4 Missense_Mutation p.S607T 0.35 tolerated(0.3) benign(0.028) TCGA-YG-AA3N-01 13 110804695 110804695 C T COL4A1 Silent p.R1638R 0.24 TCGA-YG-AA3N-01 13 110826262 110826262 C T COL4A1 Missense_Mutation p.E1164K 0.38 probably_damaging(0.977) TCGA-YG-AA3N-01 13 110829232 110829232 C T COL4A1 Missense_Mutation p.G957R 0.31 benign(0.172) TCGA-YG-AA3N-01 13 114156078 114156078 C T TMCO3 Silent p.T276T 0.25 TCGA-YG-AA3N-01 13 114303733 114303733 G A ATP4B Missense_Mutation p.P278S 0.17 tolerated(0.08) probably_damaging(0.94) TCGA-YG-AA3N-01 13 20277397 20277397 G A PSPC1 Missense_Mutation p.P497L 0.21 tolerated(0.05) benign(0.002) TCGA-YG-AA3N-01 13 20978259 20978259 A G CRYL1 3'UTR 0.32 TCGA-YG-AA3N-01 13 23911444 23911444 G A SACS Missense_Mutation p.L2191F 0.23 probably_damaging(0.997) TCGA-YG-AA3N-01 13 24515510 24515510 G A ANKRD20A19P RNA 0.29 TCGA-YG-AA3N-01 13 25262597 25262597 C T ATP12A Silent p.A123A 0.27 TCGA-YG-AA3N-01 13 27643394 27643394 A C USP12 3'UTR 0.26 TCGA-YG-AA3N-01 13 29600251 29600251 C T MTUS2 Silent p.F482F 0.36 TCGA-YG-AA3N-01 13 29600664 29600664 C T MTUS2 Missense_Mutation p.S620F 0.33 deleterious(0) possibly_damaging(0.789) TCGA-YG-AA3N-01 13 31495730 31495730 C T MEDAG Silent p.F178F 0.19 TCGA-YG-AA3N-01 13 31729746 31729746 G A HSPH1 Missense_Mutation p.H71Y 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-YG-AA3N-01 13 32863871 32863871 C T FRY Silent p.S2857S 0.19 TCGA-YG-AA3N-01 13 38166268 38166268 C T POSTN Missense_Mutation p.M84I 0.30 tolerated(0.37) benign(0.066) TCGA-YG-AA3N-01 13 38266139 38266139 G A TRPC4 Silent p.L411L 0.17 TCGA-YG-AA3N-01 13 38266140 38266140 G A TRPC4 Silent p.V410V 0.17 TCGA-YG-AA3N-01 13 39264059 39264059 G A FREM2 Missense_Mutation p.D860N 0.38 tolerated(0.06) benign(0.083) TCGA-YG-AA3N-01 13 47409542 47409542 G A HTR2A Silent p.S282S 0.19 TCGA-YG-AA3N-01 13 52742192 52742192 A G MRPS31P5 RNA 0.19 TCGA-YG-AA3N-01 13 52952533 52952533 G A THSD1 Silent p.I524I 0.08 TCGA-YG-AA3N-01 13 53313253 53313253 C T LECT1 Silent p.V42V 0.50 TCGA-YG-AA3N-01 13 58208032 58208032 C T PCDH17 Missense_Mutation p.P451L 0.26 deleterious(0) possibly_damaging(0.542) TCGA-YG-AA3N-01 13 58298910 58298910 G A PCDH17 Missense_Mutation p.E988K 0.33 deleterious(0.04) possibly_damaging(0.664) TCGA-YG-AA3N-01 13 58299167 58299167 C T PCDH17 Silent p.P1073P 0.34 TCGA-YG-AA3N-01 13 67801350 67801350 G A PCDH9 Missense_Mutation p.P408L 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 13 70371095 70371095 C T KLHL1 Splice_Site p.X472_splice 0.27 TCGA-YG-AA3N-01 13 75861143 75861143 G A TBC1D4 Nonsense_Mutation p.Q1228* 0.15 TCGA-YG-AA3N-01 13 86368316 86368316 C T SLITRK6 Silent p.R776R 0.30 TCGA-YG-AA3N-01 13 86369011 86369011 G A SLITRK6 Missense_Mutation p.L545F 0.33 tolerated(0.18) benign(0.006) TCGA-YG-AA3N-01 13 92345629 92345629 C T GPC5 Missense_Mutation p.P172S 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 13 95858979 95858979 G A ABCC4 Missense_Mutation p.S323L 0.28 tolerated(1) benign(0.029) TCGA-YG-AA3N-01 13 96293961 96293961 G A DZIP1 Missense_Mutation p.P62L 0.44 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 13 96294014 96294014 G A DZIP1 Silent p.A44A 0.26 TCGA-YG-AA3N-01 13 97639472 97639472 G A OXGR1 Missense_Mutation p.S181L 0.26 tolerated(0.13) benign(0.203) TCGA-YG-AA3N-01 14 100331902 100331902 C T EML1 Missense_Mutation p.T101I 0.08 tolerated(0.09) benign(0.155) TCGA-YG-AA3N-01 14 101450212 101450212 C T RP11-909M7.3 Intron 0.29 TCGA-YG-AA3N-01 14 101493511 101493511 C T MIR329-2 RNA 0.05 TCGA-YG-AA3N-01 14 101498354 101498354 C T MIR543 RNA 0.20 TCGA-YG-AA3N-01 14 101520688 101520688 G A MIR382 RNA 0.42 TCGA-YG-AA3N-01 14 101526986 101526986 C T MIR496 RNA 0.30 TCGA-YG-AA3N-01 14 102674959 102674959 G A WDR20 Missense_Mutation p.R182Q 0.34 deleterious(0.01) benign(0.331) TCGA-YG-AA3N-01 14 102676017 102676017 G A WDR20 Missense_Mutation p.D535N 0.31 tolerated(0.09) benign(0.347) TCGA-YG-AA3N-01 14 103372159 103372159 C T TRAF3 3'UTR 0.38 TCGA-YG-AA3N-01 14 104206557 104206557 G A PPP1R13B Silent p.T732T 0.15 TCGA-YG-AA3N-01 14 105411213 105411213 G A AHNAK2 Silent p.P3525P 0.34 TCGA-YG-AA3N-01 14 105414781 105414781 G A AHNAK2 Missense_Mutation p.S2336F 0.31 benign(0.004) TCGA-YG-AA3N-01 14 106066519 106066519 C T IGHE Missense_Mutation p.E391K 0.21 tolerated(0.4) possibly_damaging(0.633) TCGA-YG-AA3N-01 14 106110225 106110225 C T IGHG2 Missense_Mutation p.M131I 0.24 tolerated(0.11) benign(0.161) TCGA-YG-AA3N-01 14 106691904 106691904 G A IGHV3-21 Silent p.S40S 0.30 TCGA-YG-AA3N-01 14 107131213 107131213 G A IGHV3-66 Silent p.V56V 0.49 TCGA-YG-AA3N-01 14 19553553 19553553 C T POTEG Missense_Mutation p.S46F 0.04 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YG-AA3N-01 14 20215645 20215645 C T OR4Q3 Missense_Mutation p.S20F 0.18 deleterious(0.04) benign(0.151) TCGA-YG-AA3N-01 14 20216106 20216106 G A OR4Q3 Missense_Mutation p.E174K 0.10 tolerated(0.69) benign(0.021) TCGA-YG-AA3N-01 14 20344906 20344906 C T OR4K2 Silent p.V160V 0.24 TCGA-YG-AA3N-01 14 20389096 20389096 G A OR4K5 Missense_Mutation p.E111K 0.19 deleterious(0) possibly_damaging(0.786) TCGA-YG-AA3N-01 14 20404743 20404743 G A OR4K1 Silent p.V306V 0.19 TCGA-YG-AA3N-01 14 20612077 20612077 C T OR4N5 Silent p.F61F 0.33 TCGA-YG-AA3N-01 14 21490239 21490239 G A NDRG2 Missense_Mutation p.A109V 0.34 deleterious(0) possibly_damaging(0.751) TCGA-YG-AA3N-01 14 21544735 21544735 C T ARHGEF40 Missense_Mutation p.P617L 0.24 deleterious(0) benign(0.013) TCGA-YG-AA3N-01 14 21882465 21882465 G A CHD8 Missense_Mutation p.H713Y 0.53 deleterious(0.02) benign(0.388) TCGA-YG-AA3N-01 14 22337487 22337487 C T TRAV13-1 Missense_Mutation p.S93F 0.50 deleterious(0.01) possibly_damaging(0.742) TCGA-YG-AA3N-01 14 22447256 22447256 C T TRAV8-6 Silent p.I79I 0.44 TCGA-YG-AA3N-01 14 22509329 22509329 G A TRAV20 Silent p.K89K 0.38 TCGA-YG-AA3N-01 14 22616360 22616360 G A TRAV27 Missense_Mutation p.G34E 0.30 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 14 23900138 23900138 G A MYH7 Silent p.I289I 0.23 TCGA-YG-AA3N-01 14 24470268 24470268 C T DHRS4L2 Missense_Mutation p.S169F 0.18 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 14 24771456 24771456 C T NOP9 Silent p.L323L 0.31 TCGA-YG-AA3N-01 14 26918082 26918082 C T NOVA1 Missense_Mutation p.A203T 0.23 deleterious(0) unknown(0) TCGA-YG-AA3N-01 14 36840835 36840835 G A DPPA3P2 RNA 0.25 TCGA-YG-AA3N-01 14 36943020 36943020 C T SFTA3 3'UTR 0.47 TCGA-YG-AA3N-01 14 38678751 38678751 G A SSTR1 Missense_Mutation p.E53K 0.35 tolerated(0.78) benign(0.013) TCGA-YG-AA3N-01 14 38724166 38724166 C T CLEC14A Silent p.T354T 0.35 TCGA-YG-AA3N-01 14 44975345 44975345 C T FSCB Silent p.E282E 0.32 TCGA-YG-AA3N-01 14 54417137 54417137 C T BMP4 Silent p.R280R 0.10 TCGA-YG-AA3N-01 14 60213031 60213031 G A RTN1 Missense_Mutation p.S137L 0.41 deleterious(0.03) benign(0.03) TCGA-YG-AA3N-01 14 60582090 60582090 C T PCNXL4 Missense_Mutation p.P189L 0.35 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 14 60587921 60587921 C T PCNXL4 Silent p.L416L 0.26 TCGA-YG-AA3N-01 14 60976549 60976549 G T SIX6 Nonsense_Mutation p.E145* 0.35 TCGA-YG-AA3N-01 14 65210124 65210124 G A PLEKHG3 Silent p.Q1065Q 0.34 TCGA-YG-AA3N-01 14 73425441 73425441 G C DCAF4 Silent p.L472L 0.26 TCGA-YG-AA3N-01 14 74061959 74061959 C T ACOT4 Silent p.L289L 0.23 TCGA-YG-AA3N-01 14 74970038 74970038 G A LTBP2 Missense_Mutation p.T1591I 0.27 tolerated(0.1) possibly_damaging(0.886) TCGA-YG-AA3N-01 14 75182747 75182747 C T FCF1 Silent p.S79S 0.35 TCGA-YG-AA3N-01 14 76437996 76437996 C T TGFB3 Missense_Mutation p.E140K 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-YG-AA3N-01 14 77745139 77745139 G A POMT2 Silent p.F655F 0.42 TCGA-YG-AA3N-01 14 77795469 77795469 C T GSTZ1 Silent p.L116L 0.36 TCGA-YG-AA3N-01 14 77893973 77893973 G A VIPAS39 Nonsense_Mutation p.R490* 0.21 TCGA-YG-AA3N-01 14 80668616 80668616 C T DIO2 3'Flank 0.50 TCGA-YG-AA3N-01 14 81610453 81610453 C T TSHR Missense_Mutation p.A684V 0.27 deleterious(0.01) possibly_damaging(0.831) TCGA-YG-AA3N-01 14 88478231 88478231 G A GPR65 3'UTR 0.27 TCGA-YG-AA3N-01 14 92251698 92251698 G A TC2N Silent p.F390F 0.34 TCGA-YG-AA3N-01 14 92268694 92268694 C T TC2N Missense_Mutation p.D125N 0.36 deleterious(0.03) probably_damaging(0.987) TCGA-YG-AA3N-01 14 94084541 94084541 C T UNC79 Missense_Mutation p.P1233S 0.36 tolerated(0.32) possibly_damaging(0.61) TCGA-YG-AA3N-01 14 94718098 94718098 G A PPP4R4 Missense_Mutation p.G577E 0.22 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3N-01 14 95034508 95034508 C T SERPINA4 Silent p.S322S 0.25 TCGA-YG-AA3N-01 14 95108117 95108117 G A SERPINA13P RNA 0.26 TCGA-YG-AA3N-01 14 95670788 95670788 C T CLMN Missense_Mutation p.D300N 0.24 tolerated(0.07) benign(0.075) TCGA-YG-AA3N-01 14 96707028 96707028 C T BDKRB2 Silent p.F121F 0.29 TCGA-YG-AA3N-01 14 99183536 99183536 C T C14orf177 Silent p.T101T 0.38 TCGA-YG-AA3N-01 14 99641819 99641819 C T BCL11B Missense_Mutation p.E452K 0.18 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 14 99876513 99876513 A T SETD3 Intron 0.20 TCGA-YG-AA3N-01 15 100331823 100331823 G A AC090825.1 5'Flank 0.24 TCGA-YG-AA3N-01 15 101041962 101041962 G A CERS3 Silent p.L31L 0.44 TCGA-YG-AA3N-01 15 101567503 101567503 C T LRRK1 Silent p.L815L 0.24 TCGA-YG-AA3N-01 15 22332666 22332666 C T RP11-69H14.6 RNA 0.30 TCGA-YG-AA3N-01 15 23932277 23932277 C T NDN Missense_Mutation p.E30K 0.46 tolerated_low_confidence(0.82) benign(0) TCGA-YG-AA3N-01 15 24923711 24923711 C T NPAP1 Silent p.S899S 0.24 TCGA-YG-AA3N-01 15 25326484 25326484 G A SNORD116-15 RNA 0.28 TCGA-YG-AA3N-01 15 25474193 25474193 C T SNORD115-32 RNA 0.30 TCGA-YG-AA3N-01 15 30034955 30034955 A G TJP1 Silent p.S347S 0.26 TCGA-YG-AA3N-01 15 31822980 31822980 C T OTUD7A Silent p.T194T 0.28 TCGA-YG-AA3N-01 15 34648217 34648217 G A NUTM1 Missense_Mutation p.E642K 0.14 deleterious(0.04) benign(0.037) TCGA-YG-AA3N-01 15 34649302 34649302 G A NUTM1 Silent p.K1003K 0.47 TCGA-YG-AA3N-01 15 34656211 34656211 C T LPCAT4 Intron 0.27 TCGA-YG-AA3N-01 15 37184614 37184614 C T MEIS2 Missense_Mutation p.M398I 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-YG-AA3N-01 15 39893055 39893055 G A FSIP1 3'UTR 0.18 TCGA-YG-AA3N-01 15 40285047 40285047 C T EIF2AK4 Nonsense_Mutation p.Q922* 0.31 TCGA-YG-AA3N-01 15 40675135 40675135 G A KNSTRN Silent p.K33K 0.29 TCGA-YG-AA3N-01 15 40675136 40675136 T A KNSTRN Missense_Mutation p.F34I 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.616) TCGA-YG-AA3N-01 15 41859629 41859629 C T TYRO3 Silent p.L285L 0.17 TCGA-YG-AA3N-01 15 41865596 41865596 C T TYRO3 Silent p.S692S 0.21 TCGA-YG-AA3N-01 15 42002918 42002918 C T MGA Missense_Mutation p.R819C 0.35 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 15 42436661 42436661 G A PLA2G4F Silent p.F654F 0.33 TCGA-YG-AA3N-01 15 42439370 42439370 G A PLA2G4F Silent p.S457S 0.32 TCGA-YG-AA3N-01 15 42579922 42579922 G A GANC Missense_Mutation p.G79R 0.29 benign(0.005) TCGA-YG-AA3N-01 15 42651944 42651944 C T CAPN3 5'UTR 0.29 TCGA-YG-AA3N-01 15 43398227 43398227 G A UBR1 5'UTR 0.56 TCGA-YG-AA3N-01 15 43498753 43498753 G A EPB42 Missense_Mutation p.R495C 0.39 tolerated(0.19) benign(0.003) TCGA-YG-AA3N-01 15 43817650 43817650 C T MAP1A Missense_Mutation p.P1327S 0.32 benign(0.053) TCGA-YG-AA3N-01 15 43893730 43893730 C T STRC Missense_Mutation p.G1522E 0.27 tolerated(1) possibly_damaging(0.561) TCGA-YG-AA3N-01 15 44898280 44898280 G A SPG11 Missense_Mutation p.P1155S 0.47 deleterious(0) probably_damaging(0.932) TCGA-YG-AA3N-01 15 44912549 44912549 A C SPG11 Missense_Mutation p.H891Q 0.31 deleterious(0.03) possibly_damaging(0.767) TCGA-YG-AA3N-01 15 45431338 45431338 G A DUOX1 Silent p.E396E 0.35 TCGA-YG-AA3N-01 15 45431339 45431339 G A DUOX1 Missense_Mutation p.D397N 0.36 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 15 48818363 48818363 C T FBN1 Missense_Mutation p.G318S 0.27 possibly_damaging(0.871) TCGA-YG-AA3N-01 15 49860483 49860483 A G FAM227B Missense_Mutation p.F236L 0.28 tolerated(0.17) possibly_damaging(0.6) TCGA-YG-AA3N-01 15 51778399 51778399 C T DMXL2 Missense_Mutation p.G1785R 0.21 tolerated(0.47) benign(0.415) TCGA-YG-AA3N-01 15 52476822 52476822 A C GNB5 Missense_Mutation p.F18V 0.31 tolerated_low_confidence(0.22) benign(0.01) TCGA-YG-AA3N-01 15 53994342 53994342 C T WDR72 Missense_Mutation p.E520K 0.35 deleterious(0) possibly_damaging(0.611) TCGA-YG-AA3N-01 15 54306958 54306958 G A UNC13C Missense_Mutation p.E620K 0.24 deleterious_low_confidence(0) benign(0.002) TCGA-YG-AA3N-01 15 54916139 54916139 G A UNC13C Missense_Mutation p.E2116K 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-YG-AA3N-01 15 57815837 57815837 G A CGNL1 Missense_Mutation p.E956K 0.27 tolerated(0.13) possibly_damaging(0.573) TCGA-YG-AA3N-01 15 58974478 58974478 A C ADAM10 Missense_Mutation p.L81R 0.40 deleterious(0.02) possibly_damaging(0.824) TCGA-YG-AA3N-01 15 65347555 65347555 G A RASL12 Silent p.F161F 0.13 TCGA-YG-AA3N-01 15 65490750 65490750 G A CILP Missense_Mutation p.T625I 0.35 deleterious(0) possibly_damaging(0.588) TCGA-YG-AA3N-01 15 65555647 65555647 G A PARP16 Silent p.F177F 0.23 TCGA-YG-AA3N-01 15 65667553 65667553 C T IGDCC3 Missense_Mutation p.M97I 0.13 deleterious(0.04) benign(0.026) TCGA-YG-AA3N-01 15 66618203 66618203 G A DIS3L Missense_Mutation p.A568T 0.23 tolerated(0.64) benign(0.001) TCGA-YG-AA3N-01 15 69327728 69327728 G A NOX5 Missense_Mutation p.R297Q 0.17 deleterious(0) probably_damaging(0.969) TCGA-YG-AA3N-01 15 69327729 69327729 G A NOX5 Silent p.R297R 0.17 TCGA-YG-AA3N-01 15 74654164 74654164 G A CYP11A1 Intron 0.32 TCGA-YG-AA3N-01 15 74836554 74836554 G A ARID3B Missense_Mutation p.E93K 0.16 deleterious(0) benign(0.035) TCGA-YG-AA3N-01 15 75045535 75045535 G A CYP1A2 Missense_Mutation p.D393N 0.21 tolerated(0.07) benign(0.025) TCGA-YG-AA3N-01 15 75122558 75122558 G A CPLX3 Missense_Mutation p.E114K 0.33 tolerated(0.11) possibly_damaging(0.484) TCGA-YG-AA3N-01 15 75586262 75586262 C T GOLGA6D Missense_Mutation p.S568F 0.18 tolerated(0.22) benign(0.048) TCGA-YG-AA3N-01 15 75981601 75981601 G A CSPG4 Missense_Mutation p.P602L 0.44 tolerated(0.52) benign(0.003) TCGA-YG-AA3N-01 15 76074660 76074660 G T RN7SL319P 5'Flank 0.30 TCGA-YG-AA3N-01 15 77406916 77406916 G A PEAK1 Missense_Mutation p.P1608L 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 15 78461403 78461403 C T IDH3A 3'UTR 0.34 TCGA-YG-AA3N-01 15 79063576 79063576 C T ADAMTS7 Missense_Mutation p.D816N 0.35 tolerated(1) benign(0.001) TCGA-YG-AA3N-01 15 81241251 81241251 A C KIAA1199 Missense_Mutation p.K1358Q 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-YG-AA3N-01 15 81440735 81440735 G A C15orf26 Missense_Mutation p.R256K 0.26 tolerated(1) benign(0.01) TCGA-YG-AA3N-01 15 83926737 83926737 G - BNC1 Frame_Shift_Del p.S815Pfs*20 0.16 TCGA-YG-AA3N-01 15 84651207 84651207 C T ADAMTSL3 Silent p.L943L 0.22 TCGA-YG-AA3N-01 15 85401214 85401214 G A ALPK3 Missense_Mutation p.G1284E 0.20 tolerated_low_confidence(0.07) benign(0.015) TCGA-YG-AA3N-01 15 85401215 85401215 G A ALPK3 Silent p.G1284G 0.20 TCGA-YG-AA3N-01 15 88669545 88669545 G A NTRK3 Silent p.V451V 0.46 TCGA-YG-AA3N-01 15 88678460 88678460 G A NTRK3 Missense_Mutation p.S359F 0.36 deleterious(0.04) benign(0.158) TCGA-YG-AA3N-01 15 89398649 89398649 G A ACAN Missense_Mutation p.E945K 0.42 tolerated(0.13) probably_damaging(0.998) TCGA-YG-AA3N-01 15 89762226 89762226 G A RLBP1 5'UTR 0.38 TCGA-YG-AA3N-01 15 90270391 90270391 C T WDR93 Missense_Mutation p.T295I 0.31 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 15 90347521 90347521 C T ANPEP Missense_Mutation p.R381Q 0.38 tolerated(0.13) possibly_damaging(0.557) TCGA-YG-AA3N-01 15 90892261 90892261 C T GABARAPL3 Missense_Mutation p.D57N 0.44 deleterious(0.01) benign(0.12) TCGA-YG-AA3N-01 15 90903597 90903597 C T ZNF774 Silent p.P178P 0.34 TCGA-YG-AA3N-01 15 91578385 91578385 C T AC068831.10 RNA 0.42 TCGA-YG-AA3N-01 15 94882638 94882638 C T MCTP2 Missense_Mutation p.L253F 0.26 deleterious(0) probably_damaging(0.979) TCGA-YG-AA3N-01 16 10031836 10031836 G A GRIN2A Silent p.V329V 0.33 TCGA-YG-AA3N-01 16 10032235 10032235 C T GRIN2A Silent p.V196V 0.36 TCGA-YG-AA3N-01 16 112888 112888 G A RHBDF1 Missense_Mutation p.S227F 0.37 deleterious(0.01) possibly_damaging(0.701) TCGA-YG-AA3N-01 16 15166902 15166902 G A RRN3 Missense_Mutation p.R345C 0.07 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3N-01 16 17211757 17211757 C T XYLT1 Missense_Mutation p.G768D 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-YG-AA3N-01 16 18866019 18866019 G A SMG1 Missense_Mutation p.P1481L 0.34 tolerated(0.27) probably_damaging(0.996) TCGA-YG-AA3N-01 16 19492695 19492695 C T TMC5 Silent p.I757I 0.39 TCGA-YG-AA3N-01 16 19548034 19548034 T C CCP110 Missense_Mutation p.V348A 0.37 tolerated(0.21) benign(0.142) TCGA-YG-AA3N-01 16 1962146 1962146 G A HS3ST6 Silent p.F127F 0.27 TCGA-YG-AA3N-01 16 20043063 20043063 G A GPR139 Silent p.S352S 0.17 TCGA-YG-AA3N-01 16 20043751 20043751 G A GPR139 Missense_Mutation p.T123I 0.30 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 16 20448682 20448682 G A ACSM5 Missense_Mutation p.R510K 0.33 deleterious(0) benign(0.413) TCGA-YG-AA3N-01 16 21133445 21133445 C T DNAH3 Missense_Mutation p.D469N 0.39 tolerated(0.26) benign(0.002) TCGA-YG-AA3N-01 16 21210161 21210161 C T ZP2 Silent p.E650E 0.46 TCGA-YG-AA3N-01 16 22579890 22579890 G A RP11-368J21.3 RNA 0.13 TCGA-YG-AA3N-01 16 23712401 23712401 G A ERN2 Missense_Mutation p.S461F 0.35 tolerated(0.06) benign(0.111) TCGA-YG-AA3N-01 16 24581045 24581045 C T RBBP6 Missense_Mutation p.P1012S 0.30 tolerated_low_confidence(0.07) unknown(0) TCGA-YG-AA3N-01 16 2812310 2812310 C T SRRM2 Missense_Mutation p.S594L 0.30 unknown(0) TCGA-YG-AA3N-01 16 29842281 29842281 C T MVP Nonsense_Mutation p.Q70* 0.37 TCGA-YG-AA3N-01 16 29997004 29997004 C T TAOK2 Missense_Mutation p.P605L 0.36 deleterious(0) benign(0.208) TCGA-YG-AA3N-01 16 30522203 30522203 T C ITGAL Missense_Mutation p.V874A 0.37 tolerated(0.06) benign(0.014) TCGA-YG-AA3N-01 16 30616097 30616097 G A ZNF689 Missense_Mutation p.R331C 0.35 tolerated(0.19) probably_damaging(0.959) TCGA-YG-AA3N-01 16 3074192 3074192 A G THOC6 5'UTR 0.44 TCGA-YG-AA3N-01 16 31102522 31102522 T A VKORC1 Missense_Mutation p.N142I 0.42 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 16 31418987 31418987 G A ITGAD Missense_Mutation p.G286R 0.50 deleterious(0.02) probably_damaging(0.986) TCGA-YG-AA3N-01 16 31539850 31539850 C T AHSP Silent p.I49I 0.33 TCGA-YG-AA3N-01 16 3828113 3828113 G A CREBBP Missense_Mutation p.S671L 0.29 probably_damaging(0.98) TCGA-YG-AA3N-01 16 46764558 46764558 C T MYLK3 Silent p.K505K 0.42 TCGA-YG-AA3N-01 16 48221166 48221166 G A ABCC11 Missense_Mutation p.P960L 0.37 deleterious(0.02) possibly_damaging(0.651) TCGA-YG-AA3N-01 16 49670615 49670615 G A ZNF423 Silent p.F816F 0.48 TCGA-YG-AA3N-01 16 5128006 5128006 C T ALG1 Missense_Mutation p.P243L 0.22 tolerated(0.32) benign(0.004) TCGA-YG-AA3N-01 16 55846875 55846875 G A CES1 Silent p.F342F 0.45 TCGA-YG-AA3N-01 16 57009031 57009031 G A CETP Missense_Mutation p.G317S 0.55 tolerated(0.72) benign(0.003) TCGA-YG-AA3N-01 16 57144808 57144808 A G CPNE2 Missense_Mutation p.T52A 0.55 tolerated(0.15) benign(0.045) TCGA-YG-AA3N-01 16 57786721 57786721 C T KATNB1 Silent p.L246L 0.31 TCGA-YG-AA3N-01 16 66426177 66426177 C T CDH5 Missense_Mutation p.P370S 0.45 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 16 66949984 66949984 G A CDH16 Silent p.S136S 0.43 TCGA-YG-AA3N-01 16 67035328 67035328 C T CES4A Silent p.F218F 0.17 TCGA-YG-AA3N-01 16 70190389 70190389 C T PDPR Silent p.F749F 0.46 TCGA-YG-AA3N-01 16 70916634 70916634 G A HYDIN Missense_Mutation p.R3382C 0.31 probably_damaging(0.942) TCGA-YG-AA3N-01 16 71007806 71007806 C T HYDIN Missense_Mutation p.E1719K 0.23 benign(0.376) TCGA-YG-AA3N-01 16 71602164 71602164 G A TAT Silent p.I416I 0.62 TCGA-YG-AA3N-01 16 72829686 72829686 T C ZFHX3 Missense_Mutation p.K2299E 0.55 probably_damaging(0.987) TCGA-YG-AA3N-01 16 737570 737570 G A WDR24 Silent p.P217P 0.28 TCGA-YG-AA3N-01 16 77401419 77401419 G A ADAMTS18 Missense_Mutation p.P233S 0.09 tolerated(0.53) benign(0.002) TCGA-YG-AA3N-01 16 7759055 7759055 C T RBFOX1 Intron 0.20 TCGA-YG-AA3N-01 16 79245598 79245598 C T WWOX Missense_Mutation p.P384S 0.42 deleterious(0.04) benign(0.04) TCGA-YG-AA3N-01 16 80583473 80583473 C T DYNLRB2 Missense_Mutation p.R58C 0.54 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3N-01 16 80583511 80583511 G A DYNLRB2 Silent p.R70R 0.11 TCGA-YG-AA3N-01 16 80718816 80718816 G A CDYL2 Missense_Mutation p.R79C 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-YG-AA3N-01 16 8839925 8839925 G A ABAT Missense_Mutation p.M46I 0.35 tolerated(0.3) benign(0.012) TCGA-YG-AA3N-01 16 9916161 9916161 G A GRIN2A Nonsense_Mutation p.Q710* 0.28 TCGA-YG-AA3N-01 17 10295210 10295210 C T MYH8 Missense_Mutation p.A1885T 0.31 tolerated(0.06) benign(0.026) TCGA-YG-AA3N-01 17 10304066 10304066 C T MYH8 Missense_Mutation p.E1126K 0.29 deleterious(0.01) possibly_damaging(0.853) TCGA-YG-AA3N-01 17 10357101 10357101 C T MYH4 Silent p.E931E 0.20 TCGA-YG-AA3N-01 17 10358088 10358088 G A MYH4 Silent p.F825F 0.32 TCGA-YG-AA3N-01 17 10408747 10408747 G A MYH1 Silent p.S752S 0.22 TCGA-YG-AA3N-01 17 10428788 10428788 C T MYH2 Missense_Mutation p.R1506Q 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-YG-AA3N-01 17 10432379 10432379 C T MYH2 Silent p.L1124L 0.37 TCGA-YG-AA3N-01 17 10533673 10533673 G A MYH3 Missense_Mutation p.R1797C 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-YG-AA3N-01 17 11583164 11583164 C T DNAH9 Silent p.I1148I 0.24 TCGA-YG-AA3N-01 17 11592966 11592966 C T DNAH9 Missense_Mutation p.S1276F 0.30 benign(0.005) TCGA-YG-AA3N-01 17 11593049 11593049 G A DNAH9 Missense_Mutation p.E1304K 0.36 benign(0.016) TCGA-YG-AA3N-01 17 11603117 11603117 G A DNAH9 Missense_Mutation p.E1648K 0.24 benign(0.002) TCGA-YG-AA3N-01 17 11648360 11648360 G A DNAH9 Missense_Mutation p.V2120M 0.36 benign(0.017) TCGA-YG-AA3N-01 17 11666773 11666773 C T DNAH9 Missense_Mutation p.P2338S 0.30 possibly_damaging(0.633) TCGA-YG-AA3N-01 17 11757562 11757562 C T DNAH9 Silent p.F3250F 0.33 TCGA-YG-AA3N-01 17 11827204 11827204 G A DNAH9 Silent p.V3941V 0.29 TCGA-YG-AA3N-01 17 12847411 12847411 C T ARHGAP44 Silent p.F253F 0.34 TCGA-YG-AA3N-01 17 14110390 14110390 C T COX10 Missense_Mutation p.R398C 0.26 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 17 1538098 1538098 G A SCARF1 Missense_Mutation p.P816L 0.30 deleterious(0) probably_damaging(0.92) TCGA-YG-AA3N-01 17 15604494 15604494 C T ZNF286A Silent p.F22F 0.05 TCGA-YG-AA3N-01 17 15638665 15638665 G A TBC1D26 Translation_Start_Site p.M1? 0.21 deleterious(0.04) benign(0.017) TCGA-YG-AA3N-01 17 16075194 16075194 G A NCOR1 Nonsense_Mutation p.Q120* 0.28 TCGA-YG-AA3N-01 17 16456277 16456277 C T ZNF287 Silent p.E393E 0.31 TCGA-YG-AA3N-01 17 16722679 16722679 C T AC022596.6 RNA 0.40 TCGA-YG-AA3N-01 17 1704001 1704001 G A SMYD4 Silent p.S229S 0.23 TCGA-YG-AA3N-01 17 17772792 17772792 G A TOM1L2 Intron 0.19 TCGA-YG-AA3N-01 17 18023042 18023042 G A MYO15A Missense_Mutation p.D310N 0.33 possibly_damaging(0.555) TCGA-YG-AA3N-01 17 18397694 18397694 C T LGALS9C 3'UTR 0.13 TCGA-YG-AA3N-01 17 19459197 19459197 C T SLC47A1 Silent p.A276A 0.24 TCGA-YG-AA3N-01 17 20013840 20013840 C T SPECC1 Missense_Mutation p.S83L 0.20 deleterious(0.01) benign(0.409) TCGA-YG-AA3N-01 17 21731092 21731092 C T UBBP4 Missense_Mutation p.L132F 0.47 deleterious(0) probably_damaging(0.946) TCGA-YG-AA3N-01 17 2291186 2291186 G A MNT Missense_Mutation p.P322L 0.30 deleterious(0) probably_damaging(0.973) TCGA-YG-AA3N-01 17 26864146 26864146 G A FOXN1 Missense_Mutation p.E547K 0.22 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 17 28525458 28525458 C T SLC6A4 3'UTR 0.26 TCGA-YG-AA3N-01 17 2867222 2867222 G A RAP1GAP2 Missense_Mutation p.E118K 0.30 tolerated(0.06) benign(0.25) TCGA-YG-AA3N-01 17 29553474 29553474 G C NF1 Missense_Mutation p.G675R 0.34 tolerated_low_confidence(0.16) benign(0.437) TCGA-YG-AA3N-01 17 2996153 2996153 G A OR1D2 Silent p.I46I 0.31 TCGA-YG-AA3N-01 17 2996248 2996248 G A OR1D2 Silent p.L15L 0.33 TCGA-YG-AA3N-01 17 3119681 3119681 G A OR1A1 Missense_Mutation p.G256D 0.34 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3N-01 17 31260227 31260227 A C TMEM98 Missense_Mutation p.Q56P 0.40 tolerated(0.34) benign(0.418) TCGA-YG-AA3N-01 17 3181393 3181393 C T OR3A2 Silent p.K279K 0.35 TCGA-YG-AA3N-01 17 32962022 32962022 C T TMEM132E Silent p.F541F 0.41 TCGA-YG-AA3N-01 17 32964359 32964359 G A TMEM132E Missense_Mutation p.G688E 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 17 33510472 33510472 G A UNC45B Silent p.G802G 0.34 TCGA-YG-AA3N-01 17 33592345 33592345 G A SLFN5 Missense_Mutation p.R705K 0.40 tolerated(0.55) benign(0.002) TCGA-YG-AA3N-01 17 33772564 33772564 C T SLFN13 Missense_Mutation p.V46I 0.26 tolerated(1) benign(0.101) TCGA-YG-AA3N-01 17 34191788 34191788 C T C17orf66 Missense_Mutation p.D143N 0.26 deleterious(0.05) benign(0.093) TCGA-YG-AA3N-01 17 3445906 3445906 C T TRPV3 Missense_Mutation p.E185K 0.23 deleterious(0.04) benign(0.304) TCGA-YG-AA3N-01 17 35468536 35468536 G A ACACA Silent p.F2165F 0.25 TCGA-YG-AA3N-01 17 3552187 3552187 C T CTNS Missense_Mutation p.R63C 0.31 tolerated(0.08) possibly_damaging(0.594) TCGA-YG-AA3N-01 17 35736097 35736097 G A C17orf78 Silent p.R56R 0.38 TCGA-YG-AA3N-01 17 36499292 36499292 C T GPR179 Silent p.V127V 0.31 TCGA-YG-AA3N-01 17 36912198 36912198 C T PSMB3 Missense_Mutation p.P84L 0.39 deleterious(0) probably_damaging(0.947) TCGA-YG-AA3N-01 17 37186478 37186478 G A CTD-2206N4.2 5'Flank 0.42 TCGA-YG-AA3N-01 17 38816459 38816459 C T KRT222 Missense_Mutation p.E76K 0.27 tolerated(0.45) benign(0.362) TCGA-YG-AA3N-01 17 38854813 38854813 C T KRT24 Missense_Mutation p.G484E 0.24 tolerated(0.29) benign(0.138) TCGA-YG-AA3N-01 17 38928325 38928325 G A KRT26 Missense_Mutation p.S14L 0.36 tolerated_low_confidence(0.53) possibly_damaging(0.665) TCGA-YG-AA3N-01 17 38956016 38956016 C T KRT28 Missense_Mutation p.E44K 0.26 deleterious_low_confidence(0.03) benign(0.012) TCGA-YG-AA3N-01 17 39525767 39525767 C T KRT33B Missense_Mutation p.R79Q 0.36 tolerated(0.58) benign(0.037) TCGA-YG-AA3N-01 17 39535984 39535984 C T KRT34 Splice_Site p.X239_splice 0.27 TCGA-YG-AA3N-01 17 39595021 39595021 C T KRT38 Silent p.G274G 0.30 TCGA-YG-AA3N-01 17 39659300 39659300 C T KRT13 Missense_Mutation p.M262I 0.35 deleterious(0.01) benign(0.241) TCGA-YG-AA3N-01 17 39777845 39777845 C T KRT17 Silent p.K278K 0.27 TCGA-YG-AA3N-01 17 40328240 40328240 G A KCNH4 Missense_Mutation p.H221Y 0.37 deleterious(0.02) probably_damaging(0.982) TCGA-YG-AA3N-01 17 40765938 40765938 C T TUBG1 Silent p.G255G 0.32 TCGA-YG-AA3N-01 17 40874825 40874825 G A EZH1 Missense_Mutation p.H159Y 0.21 deleterious(0) probably_damaging(0.968) TCGA-YG-AA3N-01 17 40914447 40914447 G A RAMP2 Missense_Mutation p.E80K 0.33 tolerated(0.65) benign(0.009) TCGA-YG-AA3N-01 17 40936555 40936555 C T WNK4 Silent p.S376S 0.52 TCGA-YG-AA3N-01 17 42018896 42018896 G A PPY Missense_Mutation p.P43S 0.28 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 17 4210328 4210328 G A UBE2G1 Missense_Mutation p.P46L 0.37 deleterious(0.01) benign(0.431) TCGA-YG-AA3N-01 17 42476529 42476529 C T GPATCH8 Silent p.R972R 0.38 TCGA-YG-AA3N-01 17 42931995 42931995 G A EFTUD2 Missense_Mutation p.R730C 0.22 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 17 42931996 42931996 G A EFTUD2 Silent p.A729A 0.22 TCGA-YG-AA3N-01 17 4352582 4352582 G A SPNS3 Missense_Mutation p.G275R 0.34 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3N-01 17 43907553 43907553 G A CRHR1 Missense_Mutation p.M205I 0.28 tolerated(1) benign(0.005) TCGA-YG-AA3N-01 17 46030301 46030301 C T PRR15L Silent p.R100R 0.11 TCGA-YG-AA3N-01 17 47076471 47076471 G A IGF2BP1 Missense_Mutation p.G59E 0.17 deleterious(0.02) probably_damaging(0.938) TCGA-YG-AA3N-01 17 47247024 47247024 C T B4GALNT2 Silent p.T545T 0.30 TCGA-YG-AA3N-01 17 47247025 47247025 C T B4GALNT2 Missense_Mutation p.L546F 0.30 tolerated(0.05) benign(0.177) TCGA-YG-AA3N-01 17 4804984 4804984 G A C17orf107 3'UTR 0.53 TCGA-YG-AA3N-01 17 48650200 48650200 G A CACNA1G Nonsense_Mutation p.W344* 0.09 TCGA-YG-AA3N-01 17 49233114 49233114 C T NME1 Silent p.F58F 0.24 TCGA-YG-AA3N-01 17 51902233 51902233 G A KIF2B Silent p.G613G 0.28 TCGA-YG-AA3N-01 17 53007535 53007535 G A TOM1L1 Silent p.E274E 0.19 TCGA-YG-AA3N-01 17 5353568 5353568 G A DHX33 Silent p.T561T 0.28 TCGA-YG-AA3N-01 17 5436302 5436302 C T NLRP1 Missense_Mutation p.E1046K 0.38 tolerated(0.76) benign(0.003) TCGA-YG-AA3N-01 17 54558150 54558150 C T ANKFN1 Missense_Mutation p.L691F 0.17 tolerated(0.29) possibly_damaging(0.503) TCGA-YG-AA3N-01 17 56403695 56403695 C T BZRAP1 Missense_Mutation p.E177K 0.40 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 17 56679874 56679874 C A TEX14 Missense_Mutation p.V478F 0.24 deleterious(0.04) benign(0.33) TCGA-YG-AA3N-01 17 58134441 58134441 C T HEATR6 Missense_Mutation p.E683K 0.30 tolerated(0.12) benign(0.003) TCGA-YG-AA3N-01 17 59668106 59668106 G A NACA2 Nonsense_Mutation p.Q146* 0.40 TCGA-YG-AA3N-01 17 60042576 60042576 G C MED13 Missense_Mutation p.N1545K 0.31 tolerated(0.68) benign(0.01) TCGA-YG-AA3N-01 17 60821742 60821742 C T MARCH10 Missense_Mutation p.G177E 0.14 deleterious(0.05) benign(0.079) TCGA-YG-AA3N-01 17 61621669 61621669 G A KCNH6 Missense_Mutation p.E801K 0.29 tolerated_low_confidence(0.26) benign(0) TCGA-YG-AA3N-01 17 61901526 61901526 C T FTSJ3 Missense_Mutation p.E358K 0.37 tolerated(0.27) benign(0.059) TCGA-YG-AA3N-01 17 61957956 61957956 C T GH2 Missense_Mutation p.G211E 0.32 tolerated_low_confidence(0.11) probably_damaging(0.972) TCGA-YG-AA3N-01 17 61994717 61994717 G A GH1 Silent p.F202F 0.30 TCGA-YG-AA3N-01 17 61995475 61995475 C T GH1 Missense_Mutation p.E65K 0.28 tolerated(0.06) benign(0.011) TCGA-YG-AA3N-01 17 62080971 62080971 C T C17orf72 3'Flank 0.28 TCGA-YG-AA3N-01 17 6331722 6331722 G A AIPL1 Silent p.F127F 0.26 TCGA-YG-AA3N-01 17 65908991 65908991 C T BPTF Missense_Mutation p.S1664F 0.24 probably_damaging(0.991) TCGA-YG-AA3N-01 17 6690166 6690166 C T FBXO39 Missense_Mutation p.S364F 0.22 tolerated(0.69) benign(0.209) TCGA-YG-AA3N-01 17 66914321 66914321 G A ABCA8 Silent p.F598F 0.31 TCGA-YG-AA3N-01 17 66915470 66915470 C T ABCA8 Missense_Mutation p.G587E 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 17 7228637 7228637 G A NEURL4 Missense_Mutation p.R508C 0.31 tolerated(0.07) probably_damaging(0.951) TCGA-YG-AA3N-01 17 7228638 7228638 G A NEURL4 Silent p.L507L 0.31 TCGA-YG-AA3N-01 17 72368123 72368123 C T GPR142 Missense_Mutation p.T258I 0.43 tolerated(0.98) benign(0.05) TCGA-YG-AA3N-01 17 7239906 7239906 G A ACAP1 5'UTR 0.36 TCGA-YG-AA3N-01 17 72608799 72608799 C T CD300E Missense_Mutation p.G204E 0.33 tolerated(0.08) possibly_damaging(0.762) TCGA-YG-AA3N-01 17 7340223 7340223 C T TMEM102 Missense_Mutation p.P309S 0.39 tolerated(0.37) benign(0.235) TCGA-YG-AA3N-01 17 7350228 7350228 C T CHRNB1 Missense_Mutation p.S107F 0.38 tolerated(0.07) benign(0.033) TCGA-YG-AA3N-01 17 73752626 73752626 G A ITGB4 Missense_Mutation p.G1609S 0.35 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 17 7400212 7400212 G A POLR2A Missense_Mutation p.E223K 0.39 probably_damaging(0.919) TCGA-YG-AA3N-01 17 74287238 74287238 G A QRICH2 Silent p.F1024F 0.25 TCGA-YG-AA3N-01 17 74623307 74623307 G A ST6GALNAC1 Silent p.V338V 0.32 TCGA-YG-AA3N-01 17 74625336 74625336 G A ST6GALNAC1 Missense_Mutation p.P197S 0.29 benign(0.139) TCGA-YG-AA3N-01 17 74934147 74934147 C T MGAT5B Silent p.P511P 0.27 TCGA-YG-AA3N-01 17 75202848 75202848 C T SEC14L1 Silent p.F460F 0.25 TCGA-YG-AA3N-01 17 7592114 7592114 C T WRAP53 Missense_Mutation p.P50S 0.22 tolerated_low_confidence(0.07) benign(0.007) TCGA-YG-AA3N-01 17 7630559 7630559 C T DNAH2 Silent p.I116I 0.28 TCGA-YG-AA3N-01 17 76490729 76490729 C T DNAH17 Silent p.G2058G 0.30 TCGA-YG-AA3N-01 17 7674136 7674136 C T DNAH2 Missense_Mutation p.S1416L 0.23 probably_damaging(1) TCGA-YG-AA3N-01 17 78063594 78063594 C T CCDC40 Nonsense_Mutation p.Q915* 0.26 TCGA-YG-AA3N-01 17 78185909 78185909 G A SGSH Missense_Mutation p.R304C 0.23 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 17 78867649 78867649 C T RPTOR Silent p.S795S 0.17 TCGA-YG-AA3N-01 17 79287642 79287642 C T TMEM105 Missense_Mutation p.D67N 0.38 tolerated_low_confidence(0.3) benign(0) TCGA-YG-AA3N-01 17 79287665 79287665 G A TMEM105 Missense_Mutation p.S59F 0.41 deleterious_low_confidence(0.04) benign(0.045) TCGA-YG-AA3N-01 17 79650906 79650906 C T ARL16 5'UTR 0.55 TCGA-YG-AA3N-01 17 80008632 80008632 C T RFNG Missense_Mutation p.V109I 0.23 tolerated(0.17) benign(0.029) TCGA-YG-AA3N-01 17 80788227 80788227 C T ZNF750 Missense_Mutation p.D655N 0.39 tolerated(0.11) benign(0.15) TCGA-YG-AA3N-01 17 80992916 80992916 C T B3GNTL1 Missense_Mutation p.D113N 0.18 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 17 80992917 80992917 C T B3GNTL1 Silent p.L112L 0.18 TCGA-YG-AA3N-01 17 8141541 8141541 G A CTC1 Missense_Mutation p.S152F 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 17 9683224 9683224 C T DHRS7C Silent p.K133K 0.30 TCGA-YG-AA3N-01 17 9729537 9729537 C T GLP2R Missense_Mutation p.L53F 0.31 tolerated(0.13) benign(0.004) TCGA-YG-AA3N-01 17 9792920 9792920 C T GLP2R Silent p.D520D 0.26 TCGA-YG-AA3N-01 18 14763875 14763875 G A ANKRD30B Silent p.R337R 0.46 TCGA-YG-AA3N-01 18 14850309 14850309 G A ANKRD30B Silent p.V1045V 0.31 TCGA-YG-AA3N-01 18 19153569 19153569 G A ESCO1 Silent p.S412S 0.22 TCGA-YG-AA3N-01 18 19997585 19997585 C T CTAGE1 Missense_Mutation p.E64K 0.24 deleterious(0.03) benign(0.426) TCGA-YG-AA3N-01 18 22804770 22804770 G A ZNF521 Missense_Mutation p.H1038Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3N-01 18 22804771 22804771 G A ZNF521 Silent p.I1037I 0.28 TCGA-YG-AA3N-01 18 22807616 22807616 G A ZNF521 Missense_Mutation p.S89F 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-YG-AA3N-01 18 28671005 28671005 G A DSC2 Missense_Mutation p.L154F 0.37 deleterious(0.04) possibly_damaging(0.807) TCGA-YG-AA3N-01 18 28898178 28898178 G A DSG1 5'UTR 0.31 TCGA-YG-AA3N-01 18 28956808 28956808 C T DSG4 5'Flank 0.35 TCGA-YG-AA3N-01 18 28968386 28968386 G A DSG4 Silent p.G91G 0.19 TCGA-YG-AA3N-01 18 28972252 28972252 C T DSG4 Silent p.F318F 0.26 TCGA-YG-AA3N-01 18 31322983 31322983 C T ASXL3 Silent p.I1057I 0.31 TCGA-YG-AA3N-01 18 31323102 31323102 G A ASXL3 Missense_Mutation p.R1097K 0.38 probably_damaging(0.99) TCGA-YG-AA3N-01 18 31325301 31325301 G A ASXL3 Missense_Mutation p.R1830K 0.30 probably_damaging(0.99) TCGA-YG-AA3N-01 18 31326590 31326590 C T ASXL3 3'UTR 0.33 TCGA-YG-AA3N-01 18 3272902 3272902 G A MYL12B Silent p.S2S 0.29 TCGA-YG-AA3N-01 18 34854301 34854301 G A CELF4 Silent p.F258F 0.08 TCGA-YG-AA3N-01 18 40554087 40554087 C T RIT2 Silent p.R62R 0.22 TCGA-YG-AA3N-01 18 42532783 42532783 G A SETBP1 Missense_Mutation p.E1160K 0.27 deleterious(0) benign(0.363) TCGA-YG-AA3N-01 18 43316537 43316537 C T SLC14A1 Missense_Mutation p.P252L 0.28 tolerated(0.86) benign(0.003) TCGA-YG-AA3N-01 18 43447706 43447706 C T EPG5 Missense_Mutation p.R2078Q 0.31 tolerated(0.05) probably_damaging(0.947) TCGA-YG-AA3N-01 18 43619972 43619972 G A PSTPIP2 Silent p.I25I 0.33 TCGA-YG-AA3N-01 18 44272197 44272197 G A ST8SIA5 Silent p.F82F 0.30 TCGA-YG-AA3N-01 18 47463690 47463690 C T MYO5B Silent p.S610S 0.39 TCGA-YG-AA3N-01 18 52265242 52265242 C T DYNAP Missense_Mutation p.P167S 0.12 tolerated(0.49) unknown(0) TCGA-YG-AA3N-01 18 52546597 52546597 C T RAB27B Intron 0.27 TCGA-YG-AA3N-01 18 52575062 52575062 G A CCDC68 Missense_Mutation p.S302L 0.15 deleterious(0.01) benign(0.001) TCGA-YG-AA3N-01 18 53018228 53018228 G A TCF4 Missense_Mutation p.L228F 0.42 tolerated(1) possibly_damaging(0.507) TCGA-YG-AA3N-01 18 5415976 5415976 G A EPB41L3 Silent p.F636F 0.28 TCGA-YG-AA3N-01 18 54814990 54814990 A T BOD1L2 Missense_Mutation p.E149D 0.44 deleterious(0.01) benign(0.037) TCGA-YG-AA3N-01 18 56246724 56246724 C T ALPK2 Silent p.G428G 0.39 TCGA-YG-AA3N-01 18 57013154 57013154 G A LMAN1 Missense_Mutation p.P318S 0.35 tolerated(0.12) possibly_damaging(0.562) TCGA-YG-AA3N-01 18 580754 580754 G A CETN1 Missense_Mutation p.D116N 0.38 deleterious(0.04) possibly_damaging(0.478) TCGA-YG-AA3N-01 18 5969478 5969478 G A L3MBTL4 Missense_Mutation p.P519S 0.27 tolerated(0.71) possibly_damaging(0.449) TCGA-YG-AA3N-01 18 59895575 59895575 C T KIAA1468 Missense_Mutation p.P398S 0.38 tolerated(0.2) benign(0.014) TCGA-YG-AA3N-01 18 59947653 59947653 A T KIAA1468 Missense_Mutation p.T1010S 0.31 deleterious(0.02) probably_damaging(0.991) TCGA-YG-AA3N-01 18 61306534 61306534 G A SERPINB4 Missense_Mutation p.S218F 0.47 tolerated(0.69) benign(0.018) TCGA-YG-AA3N-01 18 61328412 61328412 G A SERPINB3 Silent p.F13F 0.22 TCGA-YG-AA3N-01 18 6243331 6243331 C T L3MBTL4 Nonsense_Mutation p.W141* 0.33 TCGA-YG-AA3N-01 18 70209310 70209310 C T CBLN2 Missense_Mutation p.G29E 0.50 deleterious_low_confidence(0.03) benign(0.002) TCGA-YG-AA3N-01 18 76752141 76752141 C T SALL3 Silent p.T50T 0.41 TCGA-YG-AA3N-01 18 76754623 76754623 G A SALL3 Missense_Mutation p.D878N 0.17 deleterious(0.02) possibly_damaging(0.459) TCGA-YG-AA3N-01 18 76756910 76756910 T A SALL3 Missense_Mutation p.M1164K 0.35 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 18 77895955 77895955 A C ADNP2 Missense_Mutation p.T887P 0.38 tolerated(0.22) benign(0.046) TCGA-YG-AA3N-01 19 10247918 10247918 G A DNMT1 Silent p.I1444I 0.30 TCGA-YG-AA3N-01 19 1031121 1031121 G A CNN2 Missense_Mutation p.E39K 0.25 tolerated(0.07) benign(0.143) TCGA-YG-AA3N-01 19 10600472 10600472 G A KEAP1 Silent p.I461I 0.25 TCGA-YG-AA3N-01 19 1073716 1073716 C T HMHA1 Silent p.L248L 0.55 TCGA-YG-AA3N-01 19 11565362 11565362 G A ELAVL3 Silent p.T361T 0.32 TCGA-YG-AA3N-01 19 12244412 12244412 C T ZNF20 Missense_Mutation p.G197R 0.37 tolerated(0.15) benign(0.023) TCGA-YG-AA3N-01 19 12430136 12430136 G A ZNF563 Missense_Mutation p.P235S 0.06 tolerated(1) benign(0.074) TCGA-YG-AA3N-01 19 12692182 12692182 G A ZNF490 Missense_Mutation p.S236F 0.29 deleterious(0.04) possibly_damaging(0.665) TCGA-YG-AA3N-01 19 13049538 13049538 C T CALR Silent p.A15A 0.28 TCGA-YG-AA3N-01 19 13423513 13423513 G A CACNA1A Silent p.F546F 0.27 TCGA-YG-AA3N-01 19 14001258 14001258 G A C19orf57 Silent p.S137S 0.36 TCGA-YG-AA3N-01 19 1430258 1430258 C T DAZAP1 Silent p.P256P 0.50 TCGA-YG-AA3N-01 19 15224675 15224675 C T SYDE1 Silent p.F703F 0.31 TCGA-YG-AA3N-01 19 15536357 15536357 G A WIZ Missense_Mutation p.P435L 0.48 tolerated(0.14) benign(0.33) TCGA-YG-AA3N-01 19 15769601 15769601 C T CYP4F3 Missense_Mutation p.P460L 0.23 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 19 1578212 1578212 G A MBD3 3'UTR 0.25 TCGA-YG-AA3N-01 19 15795991 15795991 C T CYP4F12 Missense_Mutation p.P367S 0.31 tolerated(0.34) benign(0.023) TCGA-YG-AA3N-01 19 16032953 16032953 G A CYP4F11 Missense_Mutation p.L337F 0.22 deleterious(0) probably_damaging(0.976) TCGA-YG-AA3N-01 19 16875863 16875863 C T NWD1 Missense_Mutation p.S757F 0.33 tolerated(0.38) benign(0.124) TCGA-YG-AA3N-01 19 17316139 17316139 G A MYO9B Silent p.G1686G 0.29 TCGA-YG-AA3N-01 19 17691591 17691591 C T COLGALT1 Missense_Mutation p.S493F 0.44 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 19 18277071 18277071 G A PIK3R2 Silent p.L506L 0.16 TCGA-YG-AA3N-01 19 18672904 18672904 G A KXD1 Missense_Mutation p.G13D 0.24 tolerated(0.81) benign(0.012) TCGA-YG-AA3N-01 19 18975031 18975031 C T UPF1 Missense_Mutation p.P943L 0.28 deleterious(0.02) benign(0.048) TCGA-YG-AA3N-01 19 19258558 19258558 C T MEF2B Silent p.R114R 0.42 TCGA-YG-AA3N-01 19 19258559 19258559 C T MEF2B Missense_Mutation p.R114Q 0.42 tolerated(0.13) probably_damaging(0.927) TCGA-YG-AA3N-01 19 19656296 19656296 C T CILP2 Missense_Mutation p.P981L 0.48 tolerated(0.47) benign(0.001) TCGA-YG-AA3N-01 19 19680375 19680375 G A PBX4 Silent p.F217F 0.25 TCGA-YG-AA3N-01 19 20188906 20188906 G A ZNF90 5'UTR 0.20 TCGA-YG-AA3N-01 19 20228946 20228946 C T ZNF90 Missense_Mutation p.H195Y 0.42 tolerated(0.15) benign(0.041) TCGA-YG-AA3N-01 19 22155201 22155201 G A ZNF208 Missense_Mutation p.H879Y 0.28 deleterious(0.01) unknown(0) TCGA-YG-AA3N-01 19 22155693 22155693 G A ZNF208 Missense_Mutation p.H715Y 0.28 deleterious(0.01) benign(0.384) TCGA-YG-AA3N-01 19 22271135 22271135 C T ZNF257 Missense_Mutation p.H195Y 0.37 tolerated(0.19) benign(0.196) TCGA-YG-AA3N-01 19 22363284 22363284 T C ZNF676 Missense_Mutation p.K412R 0.33 tolerated(0.08) probably_damaging(0.996) TCGA-YG-AA3N-01 19 22364136 22364136 G A ZNF676 Missense_Mutation p.S128L 0.24 tolerated(0.5) benign(0.002) TCGA-YG-AA3N-01 19 22784266 22784266 G A AC011467.1 5'Flank 0.38 TCGA-YG-AA3N-01 19 22940113 22940113 G A ZNF99 3'Flank 0.40 TCGA-YG-AA3N-01 19 23159296 23159296 C T ZNF728 Silent p.E281E 0.26 TCGA-YG-AA3N-01 19 23329023 23329023 G A ZNF730 Missense_Mutation p.E393K 0.28 tolerated(0.06) benign(0.16) TCGA-YG-AA3N-01 19 23543827 23543827 G A ZNF91 Missense_Mutation p.H652Y 0.28 deleterious(0.04) probably_damaging(0.971) TCGA-YG-AA3N-01 19 31048117 31048117 C T ZNF536 3'UTR 0.24 TCGA-YG-AA3N-01 19 31767736 31767736 G A TSHZ3 Missense_Mutation p.P988L 0.32 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 19 31768171 31768171 G A TSHZ3 Missense_Mutation p.A843V 0.31 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 19 31768186 31768186 G A TSHZ3 Missense_Mutation p.P838L 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-YG-AA3N-01 19 31768187 31768187 G A TSHZ3 Missense_Mutation p.P838S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-YG-AA3N-01 19 3207802 3207802 C T NCLN 3'UTR 0.47 TCGA-YG-AA3N-01 19 3207803 3207803 C T NCLN 3'UTR 0.47 TCGA-YG-AA3N-01 19 32844299 32844299 C T ZNF507 Missense_Mutation p.S188F 0.34 deleterious(0.03) benign(0.328) TCGA-YG-AA3N-01 19 33355584 33355584 C T SLC7A9 Silent p.V62V 0.37 TCGA-YG-AA3N-01 19 3425127 3425127 C T NFIC Missense_Mutation p.R196W 0.17 deleterious(0) possibly_damaging(0.614) TCGA-YG-AA3N-01 19 34869895 34869895 C T GPI Silent p.L241L 0.24 TCGA-YG-AA3N-01 19 35514137 35514137 C T GRAMD1A Intron 0.32 TCGA-YG-AA3N-01 19 35719375 35719375 G A FAM187B Missense_Mutation p.S70F 0.37 deleterious(0.04) benign(0.04) TCGA-YG-AA3N-01 19 35996844 35996844 C T DMKN Nonsense_Mutation p.W361* 0.28 TCGA-YG-AA3N-01 19 36227863 36227863 C T KMT2B Nonsense_Mutation p.R2450* 0.14 TCGA-YG-AA3N-01 19 36518156 36518156 G A CLIP3 Missense_Mutation p.P62S 0.14 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 19 36884537 36884537 G A ZFP82 Silent p.F235F 0.34 TCGA-YG-AA3N-01 19 3743989 3743989 G A TJP3 Missense_Mutation p.M641I 0.34 tolerated(0.1) benign(0.202) TCGA-YG-AA3N-01 19 37618643 37618643 T C ZNF420 Silent p.P250P 0.36 TCGA-YG-AA3N-01 19 37677134 37677134 C T ZNF585B Silent p.E435E 0.09 TCGA-YG-AA3N-01 19 37879562 37879562 C T ZNF527 Missense_Mutation p.S204L 0.28 tolerated(0.17) benign(0.051) TCGA-YG-AA3N-01 19 37903784 37903784 G A ZNF569 Silent p.S592S 0.27 TCGA-YG-AA3N-01 19 38028259 38028259 G A ZNF793 Silent p.G233G 0.30 TCGA-YG-AA3N-01 19 38689076 38689076 C T SIPA1L3 Missense_Mutation p.P1630S 0.33 tolerated(0.25) benign(0.011) TCGA-YG-AA3N-01 19 38795571 38795571 G A C19orf33 Silent p.K96K 0.29 TCGA-YG-AA3N-01 19 38937194 38937194 T A RYR1 Missense_Mutation p.D238E 0.25 benign(0.241) TCGA-YG-AA3N-01 19 39025368 39025368 G A RYR1 Silent p.Q3756Q 0.22 TCGA-YG-AA3N-01 19 39600746 39600746 G A PAPL Silent p.R435R 0.31 TCGA-YG-AA3N-01 19 39914819 39914819 G A PLEKHG2 Missense_Mutation p.V1016I 0.29 tolerated_low_confidence(0.22) benign(0.004) TCGA-YG-AA3N-01 19 40221929 40221929 G A CLC 3'UTR 0.33 TCGA-YG-AA3N-01 19 40581500 40581500 C A ZNF780A Silent p.G284G 0.26 TCGA-YG-AA3N-01 19 40711191 40711191 G A MAP3K10 Silent p.R392R 0.17 TCGA-YG-AA3N-01 19 40883774 40883774 G A PLD3 Missense_Mutation p.E423K 0.34 deleterious(0) possibly_damaging(0.77) TCGA-YG-AA3N-01 19 41117879 41117879 C T LTBP4 Missense_Mutation p.S790F 0.43 deleterious(0) probably_damaging(0.935) TCGA-YG-AA3N-01 19 41117880 41117880 C T LTBP4 Silent p.S790S 0.43 TCGA-YG-AA3N-01 19 41704467 41704467 C T CYP2S1 Silent p.F198F 0.35 TCGA-YG-AA3N-01 19 41932665 41932665 G A B3GNT8 Missense_Mutation p.L7F 0.28 deleterious(0.03) possibly_damaging(0.889) TCGA-YG-AA3N-01 19 42265227 42265227 C T CEACAM6 Silent p.F165F 0.32 TCGA-YG-AA3N-01 19 42341256 42341256 C T LYPD4 Nonsense_Mutation p.W234* 0.36 TCGA-YG-AA3N-01 19 42509887 42509887 C T GRIK5 Missense_Mutation p.G751S 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 19 42729920 42729920 C T ZNF526 Silent p.S455S 0.37 TCGA-YG-AA3N-01 19 42795344 42795344 G A CIC Silent p.L808L 0.40 TCGA-YG-AA3N-01 19 42796893 42796893 C T CIC Silent p.S1117S 0.33 TCGA-YG-AA3N-01 19 42933054 42933054 G A CXCL17 Silent p.S114S 0.33 TCGA-YG-AA3N-01 19 43259363 43259363 C T PSG8 Silent p.K255K 0.04 TCGA-YG-AA3N-01 19 43519492 43519492 G A PSG11 Missense_Mutation p.S247L 0.21 tolerated(0.09) benign(0.341) TCGA-YG-AA3N-01 19 43922048 43922048 C T TEX101 Missense_Mutation p.T155I 0.23 tolerated(0.1) possibly_damaging(0.857) TCGA-YG-AA3N-01 19 43922049 43922049 C T TEX101 Silent p.T155T 0.24 TCGA-YG-AA3N-01 19 44224001 44224001 G A IRGC Missense_Mutation p.G431R 0.24 deleterious_low_confidence(0.03) benign(0.157) TCGA-YG-AA3N-01 19 44377115 44377115 C T ZNF404 Silent p.G417G 0.39 TCGA-YG-AA3N-01 19 44536661 44536661 C T ZNF222 Silent p.V318V 0.26 TCGA-YG-AA3N-01 19 44585203 44585203 C T ZNF284 Silent p.F17F 0.24 TCGA-YG-AA3N-01 19 44590111 44590111 C T ZNF284 Silent p.S160S 0.24 TCGA-YG-AA3N-01 19 44635341 44635341 C T ZNF225 Missense_Mutation p.R192C 0.31 tolerated(0.12) benign(0.036) TCGA-YG-AA3N-01 19 44936440 44936440 C T ZNF229 Silent p.E65E 0.34 TCGA-YG-AA3N-01 19 45322057 45322057 C T BCAM Silent p.S418S 0.29 TCGA-YG-AA3N-01 19 45570826 45570826 C T CLASRP Silent p.S547S 0.27 TCGA-YG-AA3N-01 19 45570827 45570827 C T CLASRP Missense_Mutation p.P548S 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-YG-AA3N-01 19 45976340 45976340 A G FOSB 3'UTR 0.27 TCGA-YG-AA3N-01 19 46094088 46094088 G A GPR4 Missense_Mutation p.P346L 0.30 deleterious(0.01) benign(0.037) TCGA-YG-AA3N-01 19 46120028 46120028 G A EML2 Missense_Mutation p.S670F 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-YG-AA3N-01 19 46205162 46205162 C T QPCTL Silent p.F331F 0.17 TCGA-YG-AA3N-01 19 46387714 46387714 G A IRF2BP1 Missense_Mutation p.P440L 0.38 tolerated(0.08) benign(0) TCGA-YG-AA3N-01 19 46387715 46387715 G A IRF2BP1 Missense_Mutation p.P440S 0.39 tolerated(0.39) benign(0) TCGA-YG-AA3N-01 19 46733394 46733394 C T IGFL1 Missense_Mutation p.L19F 0.39 deleterious(0.05) possibly_damaging(0.532) TCGA-YG-AA3N-01 19 46973509 46973509 C T PNMAL1 Missense_Mutation p.G262S 0.28 tolerated(0.06) probably_damaging(0.931) TCGA-YG-AA3N-01 19 46998331 46998331 G A PNMAL2 Missense_Mutation p.P131L 0.28 tolerated(0.49) benign(0.013) TCGA-YG-AA3N-01 19 47124764 47124764 G A PTGIR Missense_Mutation p.L312F 0.19 tolerated(0.73) benign(0.007) TCGA-YG-AA3N-01 19 47124918 47124918 G A PTGIR Silent p.F260F 0.10 TCGA-YG-AA3N-01 19 47935629 47935629 G A SLC8A2 Silent p.F728F 0.40 TCGA-YG-AA3N-01 19 48248811 48248811 G A GLTSCR2 5'UTR 0.29 TCGA-YG-AA3N-01 19 48343226 48343226 G A CRX 3'UTR 0.34 TCGA-YG-AA3N-01 19 48734984 48734984 G A CARD8 Missense_Mutation p.R159C 0.32 tolerated(0.07) benign(0.238) TCGA-YG-AA3N-01 19 48789585 48789585 C T ZNF114 Missense_Mutation p.S235F 0.34 deleterious(0.03) possibly_damaging(0.485) TCGA-YG-AA3N-01 19 49055496 49055496 C T SULT2B1 5'UTR 0.32 TCGA-YG-AA3N-01 19 49248962 49248962 G A IZUMO1 Missense_Mutation p.A52V 0.24 tolerated(0.1) benign(0.076) TCGA-YG-AA3N-01 19 49442897 49442897 C T DHDH Silent p.S186S 0.29 TCGA-YG-AA3N-01 19 49973651 49973651 C T ALDH16A1 Missense_Mutation p.A779V 0.26 tolerated(0.15) benign(0.002) TCGA-YG-AA3N-01 19 50096654 50096654 C T PRR12 Missense_Mutation p.P53S 0.42 possibly_damaging(0.803) TCGA-YG-AA3N-01 19 50096655 50096655 C T PRR12 Missense_Mutation p.P53L 0.42 possibly_damaging(0.851) TCGA-YG-AA3N-01 19 50100028 50100028 C T PRR12 Silent p.P812P 0.31 TCGA-YG-AA3N-01 19 50462129 50462129 G A SIGLEC11 Silent p.S378S 0.12 TCGA-YG-AA3N-01 19 51446782 51446782 G A KLK5 3'UTR 0.20 TCGA-YG-AA3N-01 19 51647870 51647870 G A SIGLEC7 Missense_Mutation p.S214N 0.31 tolerated(1) benign(0.007) TCGA-YG-AA3N-01 19 51743011 51743011 G A CD33 3'UTR 0.27 TCGA-YG-AA3N-01 19 51770777 51770777 G A SIGLECL1 Silent p.R187R 0.25 TCGA-YG-AA3N-01 19 51918691 51918691 G A SIGLEC10 Silent p.V358V 0.08 TCGA-YG-AA3N-01 19 51919293 51919293 G A SIGLEC10 Missense_Mutation p.L295F 0.40 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 19 51994994 51994994 G A SIGLEC12 Silent p.I563I 0.36 TCGA-YG-AA3N-01 19 52004963 52004963 G A SIGLEC12 Missense_Mutation p.P9S 0.53 tolerated_low_confidence(0.35) unknown(0) TCGA-YG-AA3N-01 19 52091150 52091150 G A ZNF175 Silent p.Q522Q 0.29 TCGA-YG-AA3N-01 19 52497401 52497401 G A ZNF615 Missense_Mutation p.H321Y 0.35 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 19 52941094 52941094 G A ZNF534 Silent p.R140R 0.30 TCGA-YG-AA3N-01 19 53013965 53013965 C T ZNF578 Missense_Mutation p.H111Y 0.33 tolerated(0.19) possibly_damaging(0.536) TCGA-YG-AA3N-01 19 53454822 53454822 G A ZNF816 Missense_Mutation p.S69F 0.38 tolerated(0.78) benign(0.003) TCGA-YG-AA3N-01 19 53472790 53472790 C T ZNF702P RNA 0.20 TCGA-YG-AA3N-01 19 53669087 53669087 G A ZNF665 Missense_Mutation p.S219L 0.28 tolerated(0.07) benign(0.333) TCGA-YG-AA3N-01 19 53740440 53740440 G A ZNF677 Missense_Mutation p.P514S 0.35 deleterious(0.05) probably_damaging(0.996) TCGA-YG-AA3N-01 19 54135323 54135323 C T DPRX 5'UTR 0.32 TCGA-YG-AA3N-01 19 54567037 54567037 C T VSTM1 5'UTR 0.34 TCGA-YG-AA3N-01 19 54745620 54745620 G A LILRA6 Missense_Mutation p.P164S 0.15 tolerated(1) benign(0.012) TCGA-YG-AA3N-01 19 54848884 54848884 C A LILRA4 Missense_Mutation p.D247Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 19 55019106 55019106 G A LAIR2 Missense_Mutation p.G24E 0.34 tolerated(0.15) benign(0.242) TCGA-YG-AA3N-01 19 55143633 55143633 G A LILRB1 Silent p.S202S 0.39 TCGA-YG-AA3N-01 19 55346569 55346569 G A KIR3DL1 3'Flank 0.26 TCGA-YG-AA3N-01 19 55378284 55378284 C T KIR3DL2 3'UTR 0.27 TCGA-YG-AA3N-01 19 55401098 55401098 C T FCAR Silent p.L245L 0.33 TCGA-YG-AA3N-01 19 55494104 55494104 C T NLRP2 Silent p.I346I 0.17 TCGA-YG-AA3N-01 19 55526065 55526065 C T GP6 Silent p.R416R 0.35 TCGA-YG-AA3N-01 19 55995120 55995120 G A ZNF628 Missense_Mutation p.V854I 0.25 tolerated(0.23) unknown(0) TCGA-YG-AA3N-01 19 56363507 56363507 G A NLRP4 Missense_Mutation p.E21K 0.29 tolerated(1) benign(0.059) TCGA-YG-AA3N-01 19 56369635 56369635 G A NLRP4 Silent p.T292T 0.34 TCGA-YG-AA3N-01 19 56370376 56370376 G A NLRP4 Silent p.G539G 0.38 TCGA-YG-AA3N-01 19 56538553 56538553 C T NLRP5 Silent p.F318F 0.35 TCGA-YG-AA3N-01 19 56552386 56552386 G A NLRP5 Missense_Mutation p.S962N 0.26 tolerated(0.58) benign(0.002) TCGA-YG-AA3N-01 19 57036372 57036372 T A ZNF471 Missense_Mutation p.H312Q 0.31 deleterious(0) probably_damaging(0.975) TCGA-YG-AA3N-01 19 57176349 57176349 C T ZNF835 Missense_Mutation p.S73N 0.24 tolerated(0.49) benign(0.018) TCGA-YG-AA3N-01 19 57327928 57327928 C T PEG3 Missense_Mutation p.E628K 0.10 deleterious(0.04) possibly_damaging(0.784) TCGA-YG-AA3N-01 19 58084984 58084984 G A ZNF416 Silent p.A96A 0.27 TCGA-YG-AA3N-01 19 58579659 58579659 G A ZNF135 Missense_Mutation p.E627K 0.31 deleterious(0.02) possibly_damaging(0.799) TCGA-YG-AA3N-01 19 58724484 58724484 G A ZNF274 Missense_Mutation p.R645Q 0.25 tolerated_low_confidence(0.3) benign(0.196) TCGA-YG-AA3N-01 19 59060583 59060583 C T TRIM28 Silent p.P546P 0.28 TCGA-YG-AA3N-01 19 6183238 6183238 C T ACSBG2 Missense_Mutation p.S426L 0.38 deleterious(0) possibly_damaging(0.883) TCGA-YG-AA3N-01 19 6890538 6890538 G A EMR1 Silent p.R26R 0.25 TCGA-YG-AA3N-01 19 6937610 6937610 C T EMR1 Missense_Mutation p.S869F 0.32 deleterious(0) possibly_damaging(0.907) TCGA-YG-AA3N-01 19 7117232 7117232 G A INSR Silent p.P1328P 0.27 TCGA-YG-AA3N-01 19 7676863 7676863 C T CAMSAP3 Missense_Mutation p.S522F 0.35 deleterious(0.04) benign(0.213) TCGA-YG-AA3N-01 19 7807894 7807894 G A CD209 3'UTR 0.41 TCGA-YG-AA3N-01 19 7830827 7830827 C A CLEC4M Missense_Mutation p.P173Q 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-YG-AA3N-01 19 7965685 7965685 C T LRRC8E Silent p.L760L 0.17 TCGA-YG-AA3N-01 19 8122783 8122783 C T CCL25 Missense_Mutation p.L142F 0.29 tolerated(0.3) probably_damaging(0.986) TCGA-YG-AA3N-01 19 8167741 8167741 G A FBN3 Silent p.V1652V 0.30 TCGA-YG-AA3N-01 19 8203092 8203092 C G FBN3 Silent p.A378A 0.47 TCGA-YG-AA3N-01 19 8321544 8321544 G A CERS4 Missense_Mutation p.G188S 0.19 tolerated(1) benign(0.012) TCGA-YG-AA3N-01 19 8808018 8808018 G A ACTL9 Missense_Mutation p.S345L 0.24 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 19 8808774 8808774 C T ACTL9 Missense_Mutation p.G93E 0.46 tolerated(0.98) benign(0.001) TCGA-YG-AA3N-01 19 9000462 9000462 C T MUC16 Missense_Mutation p.E13508K 0.28 probably_damaging(0.92) TCGA-YG-AA3N-01 19 9046321 9046321 G A MUC16 Silent p.T11770T 0.37 TCGA-YG-AA3N-01 19 9050085 9050085 C T MUC16 Missense_Mutation p.A10516T 0.37 benign(0.145) TCGA-YG-AA3N-01 19 9057317 9057317 G A MUC16 Silent p.I10043I 0.23 TCGA-YG-AA3N-01 19 9061788 9061788 G A MUC16 Missense_Mutation p.P8553L 0.25 unknown(0) TCGA-YG-AA3N-01 19 9063550 9063550 C T MUC16 Missense_Mutation p.E7966K 0.12 unknown(0) TCGA-YG-AA3N-01 19 9066360 9066360 G A MUC16 Missense_Mutation p.T7029I 0.20 unknown(0) TCGA-YG-AA3N-01 19 9069895 9069895 G A MUC16 Missense_Mutation p.P5851S 0.30 unknown(0) TCGA-YG-AA3N-01 19 9072343 9072343 C T MUC16 Missense_Mutation p.D5035N 0.32 unknown(0) TCGA-YG-AA3N-01 19 9074963 9074963 G A MUC16 Silent p.S4161S 0.17 TCGA-YG-AA3N-01 19 9076150 9076150 C T MUC16 Missense_Mutation p.E3766K 0.40 unknown(0) TCGA-YG-AA3N-01 19 9492036 9492036 G A ZNF177 Silent p.K343K 0.23 TCGA-YG-AA3N-01 19 9577889 9577889 C A ZNF560 Silent p.G578G 0.40 TCGA-YG-AA3N-01 19 9578570 9578570 C T ZNF560 Silent p.K351K 0.30 TCGA-YG-AA3N-01 19 9578690 9578690 C T ZNF560 Silent p.R311R 0.30 TCGA-YG-AA3N-01 19 9639839 9639839 G A ZNF426 Silent p.Y294Y 0.26 TCGA-YG-AA3N-01 1 100346219 100346219 G A AGL Silent p.E589E 0.33 TCGA-YG-AA3N-01 1 101198024 101198024 G A VCAM1 Missense_Mutation p.E526K 0.15 deleterious(0) probably_damaging(0.976) TCGA-YG-AA3N-01 1 101203794 101203794 G A VCAM1 Missense_Mutation p.M725I 0.34 tolerated(0.32) possibly_damaging(0.642) TCGA-YG-AA3N-01 1 104118060 104118060 C T AMY2B Intron 0.29 TCGA-YG-AA3N-01 1 108023371 108023371 C T NTNG1 Missense_Mutation p.S510F 0.20 deleterious(0.02) possibly_damaging(0.519) TCGA-YG-AA3N-01 1 108115982 108115982 G A VAV3 Missense_Mutation p.P839S 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 109812050 109812050 C T CELSR2 Missense_Mutation p.P2273S 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-YG-AA3N-01 1 109838870 109838870 G C MYBPHL Missense_Mutation p.R285G 0.25 deleterious(0) probably_damaging(0.958) TCGA-YG-AA3N-01 1 110049924 110049924 G A AMIGO1 3'UTR 0.33 TCGA-YG-AA3N-01 1 110293384 110293384 C T EPS8L3 Silent p.G557G 0.26 TCGA-YG-AA3N-01 1 111060362 111060362 G A KCNA10 Missense_Mutation p.R350C 0.24 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 111216051 111216051 C T KCNA3 Missense_Mutation p.G461R 0.23 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 111216052 111216052 C T KCNA3 Silent p.V460V 0.23 TCGA-YG-AA3N-01 1 111825256 111825256 C T CHIAP2 RNA 0.34 TCGA-YG-AA3N-01 1 111963996 111963996 G A OVGP1 Missense_Mutation p.L269F 0.08 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 1 113269326 113269326 C T FAM19A3 3'UTR 0.28 TCGA-YG-AA3N-01 1 114424588 114424588 G A BCL2L15 Missense_Mutation p.S94F 0.39 deleterious(0.03) benign(0.06) TCGA-YG-AA3N-01 1 114438536 114438536 C A AP4B1 Missense_Mutation p.L545F 0.29 tolerated(0.18) possibly_damaging(0.786) TCGA-YG-AA3N-01 1 11561683 11561683 G A PTCHD2 Missense_Mutation p.D212N 0.38 tolerated_low_confidence(0.4) benign(0) TCGA-YG-AA3N-01 1 116563386 116563386 C T SLC22A15 Missense_Mutation p.P160S 0.32 deleterious(0.03) probably_damaging(1) TCGA-YG-AA3N-01 1 117311437 117311437 G A CD2 3'UTR 0.42 TCGA-YG-AA3N-01 1 117561047 117561047 C T CD101 Missense_Mutation p.H628Y 0.33 tolerated(0.14) benign(0.005) TCGA-YG-AA3N-01 1 117695778 117695778 T C VTCN1 Missense_Mutation p.N220S 0.39 tolerated(0.16) possibly_damaging(0.531) TCGA-YG-AA3N-01 1 117699198 117699198 C T VTCN1 Missense_Mutation p.G148E 0.27 deleterious(0) probably_damaging(0.934) TCGA-YG-AA3N-01 1 118009010 118009010 C T MAN1A2 Missense_Mutation p.P377S 0.12 deleterious(0) possibly_damaging(0.847) TCGA-YG-AA3N-01 1 119428029 119428029 G A TBX15 Missense_Mutation p.P273S 0.37 tolerated(0.21) probably_damaging(0.996) TCGA-YG-AA3N-01 1 120437578 120437578 C T ADAM30 Missense_Mutation p.G461E 0.28 tolerated(1) benign(0) TCGA-YG-AA3N-01 1 120438559 120438559 C T ADAM30 Missense_Mutation p.R134Q 0.26 deleterious(0.05) possibly_damaging(0.598) TCGA-YG-AA3N-01 1 12317132 12317132 C T VPS13D Missense_Mutation p.A310V 0.25 benign(0.228) TCGA-YG-AA3N-01 1 12395866 12395866 C T VPS13D Missense_Mutation p.P2845S 0.17 probably_damaging(0.996) TCGA-YG-AA3N-01 1 12819278 12819278 G A C1orf158 Silent p.Q87Q 0.32 TCGA-YG-AA3N-01 1 12820790 12820790 C T C1orf158 Missense_Mutation p.S164L 0.43 tolerated(0.32) benign(0.006) TCGA-YG-AA3N-01 1 12835911 12835911 G A PRAMEF12 Silent p.Q171Q 0.33 TCGA-YG-AA3N-01 1 12884698 12884698 G A PRAMEF11 3'UTR 0.25 TCGA-YG-AA3N-01 1 12908101 12908101 C T HNRNPCL1 Missense_Mutation p.M14I 0.14 tolerated(0.83) benign(0.007) TCGA-YG-AA3N-01 1 12920113 12920113 G A PRAMEF2 Missense_Mutation p.E285K 0.29 deleterious(0) possibly_damaging(0.521) TCGA-YG-AA3N-01 1 12921134 12921134 G A PRAMEF2 Missense_Mutation p.D309N 0.35 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 1 12942071 12942071 C T PRAMEF4 Missense_Mutation p.R160K 0.25 tolerated(0.52) benign(0.032) TCGA-YG-AA3N-01 1 12955591 12955591 C T PRAMEF10 Missense_Mutation p.E30K 0.21 tolerated(0.18) benign(0.005) TCGA-YG-AA3N-01 1 1403962 1403962 C T ATAD3C 3'UTR 0.29 TCGA-YG-AA3N-01 1 145533856 145533856 C T ITGA10 Missense_Mutation p.T501I 0.29 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 1 145558914 145558914 G A ANKRD35 Missense_Mutation p.R178Q 0.33 tolerated(0.22) possibly_damaging(0.857) TCGA-YG-AA3N-01 1 145561541 145561541 G A ANKRD35 Missense_Mutation p.G410E 0.25 tolerated(0.28) probably_damaging(0.972) TCGA-YG-AA3N-01 1 1459310 1459310 G A ATAD3A Missense_Mutation p.G400E 0.35 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 150315916 150315916 C T PRPF3 Missense_Mutation p.P472S 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-YG-AA3N-01 1 150599762 150599762 G A ENSA Intron 0.30 TCGA-YG-AA3N-01 1 150921649 150921649 G A SETDB1 Missense_Mutation p.G440D 0.16 tolerated(0.68) benign(0.063) TCGA-YG-AA3N-01 1 150973774 150973774 G A FAM63A Silent p.S224S 0.33 TCGA-YG-AA3N-01 1 151536413 151536413 A G TUFT1 Missense_Mutation p.I91V 0.34 tolerated(0.35) benign(0.007) TCGA-YG-AA3N-01 1 152127402 152127402 G A RPTN Missense_Mutation p.P725S 0.30 tolerated(0.36) possibly_damaging(0.545) TCGA-YG-AA3N-01 1 152128064 152128064 C T RPTN Missense_Mutation p.G504E 0.24 deleterious(0.04) benign(0.017) TCGA-YG-AA3N-01 1 152129367 152129367 C T RPTN Missense_Mutation p.D70N 0.40 deleterious(0.02) probably_damaging(0.934) TCGA-YG-AA3N-01 1 152190844 152190844 C T HRNR Silent p.S1087S 0.27 TCGA-YG-AA3N-01 1 152192070 152192070 C T HRNR Missense_Mutation p.G679R 0.29 unknown(0) TCGA-YG-AA3N-01 1 152279017 152279017 C T FLG Missense_Mutation p.G2782D 0.12 benign(0.441) TCGA-YG-AA3N-01 1 152325228 152325228 T G FLG2 Silent p.G1678G 0.38 TCGA-YG-AA3N-01 1 152759937 152759937 C T LCE1E Silent p.S54S 0.11 TCGA-YG-AA3N-01 1 153043226 153043226 C T SPRR2B Silent p.P30P 0.26 TCGA-YG-AA3N-01 1 153066247 153066247 C T SPRR2E Splice_Site 0.11 TCGA-YG-AA3N-01 1 153314148 153314148 C T PGLYRP4 Missense_Mutation p.G194S 0.26 tolerated(0.67) benign(0.225) TCGA-YG-AA3N-01 1 154313400 154313400 C T ATP8B2 Missense_Mutation p.R402W 0.21 deleterious(0) possibly_damaging(0.613) TCGA-YG-AA3N-01 1 154951312 154951312 C T CKS1B 3'UTR 0.33 TCGA-YG-AA3N-01 1 154987993 154987993 C T ZBTB7B Missense_Mutation p.P320L 0.26 tolerated(0.09) benign(0.116) TCGA-YG-AA3N-01 1 155629521 155629521 G A YY1AP1 Missense_Mutation p.S865F 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.466) TCGA-YG-AA3N-01 1 155649280 155649280 G A YY1AP1 Silent p.S153S 0.26 TCGA-YG-AA3N-01 1 155707982 155707982 C T DAP3 Silent p.F382F 0.46 TCGA-YG-AA3N-01 1 156255320 156255320 C T TMEM79 Silent p.P101P 0.09 TCGA-YG-AA3N-01 1 156438781 156438781 G A MEF2D Silent p.S346S 0.40 TCGA-YG-AA3N-01 1 156616907 156616907 C T BCAN Missense_Mutation p.R136C 0.53 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 156784068 156784068 C T SH2D2A Silent p.L119L 0.52 TCGA-YG-AA3N-01 1 156846345 156846345 G A NTRK1 Missense_Mutation p.D596N 0.22 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 157512894 157512894 G A FCRL5 Missense_Mutation p.P293L 0.21 tolerated(0.15) benign(0.329) TCGA-YG-AA3N-01 1 157516898 157516898 G A FCRL5 Missense_Mutation p.R48C 0.33 tolerated(0.06) possibly_damaging(0.773) TCGA-YG-AA3N-01 1 157516962 157516962 G A FCRL5 Silent p.F26F 0.31 TCGA-YG-AA3N-01 1 158299350 158299350 C T CD1B Silent p.K232K 0.24 TCGA-YG-AA3N-01 1 158436071 158436071 C T OR10K1 Silent p.T240T 0.27 TCGA-YG-AA3N-01 1 158596004 158596004 C T SPTA1 Missense_Mutation p.E1948K 0.22 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 1 158615383 158615383 C T SPTA1 Missense_Mutation p.D1300N 0.27 deleterious(0.01) benign(0.079) TCGA-YG-AA3N-01 1 159283573 159283573 C T OR10J3 Missense_Mutation p.E293K 0.32 tolerated(0.93) benign(0.001) TCGA-YG-AA3N-01 1 159283647 159283647 G A OR10J3 Missense_Mutation p.S268F 0.24 deleterious(0.05) benign(0.111) TCGA-YG-AA3N-01 1 159409767 159409767 C T OR10J1 Silent p.F73F 0.25 TCGA-YG-AA3N-01 1 159410507 159410507 C T OR10J1 Missense_Mutation p.S320F 0.32 deleterious(0) probably_damaging(0.914) TCGA-YG-AA3N-01 1 159558334 159558334 G T APCS Missense_Mutation p.V170L 0.36 deleterious(0.02) benign(0.314) TCGA-YG-AA3N-01 1 160105343 160105343 G A ATP1A2 Missense_Mutation p.M745I 0.26 deleterious(0.04) possibly_damaging(0.84) TCGA-YG-AA3N-01 1 160607016 160607016 G A SLAMF1 Missense_Mutation p.S127L 0.30 deleterious(0.02) possibly_damaging(0.829) TCGA-YG-AA3N-01 1 160850994 160850994 C T ITLN1 Missense_Mutation p.D172N 0.31 tolerated(0.85) benign(0.002) TCGA-YG-AA3N-01 1 16095026 16095026 C T FBLIM1 Missense_Mutation p.P148S 0.33 tolerated(0.77) benign(0.047) TCGA-YG-AA3N-01 1 161018971 161018971 C T ARHGAP30 Missense_Mutation p.D614N 0.34 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 166926004 166926004 C T ILDR2 Silent p.G155G 0.30 TCGA-YG-AA3N-01 1 167088631 167088631 C T DUSP27 Missense_Mutation p.P195S 0.32 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 1 167095044 167095044 G A DUSP27 Missense_Mutation p.E226K 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-YG-AA3N-01 1 167097241 167097241 C T DUSP27 Missense_Mutation p.S958F 0.35 deleterious(0.02) benign(0.024) TCGA-YG-AA3N-01 1 167653186 167653186 C T RCSD1 Missense_Mutation p.S19L 0.28 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 1 167805627 167805627 C T ADCY10 Missense_Mutation p.A1077T 0.30 tolerated(0.08) probably_damaging(0.928) TCGA-YG-AA3N-01 1 167849811 167849811 C T ADCY10 Missense_Mutation p.E353K 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-YG-AA3N-01 1 16913549 16913549 G A NBPF1 Silent p.L258L 0.09 TCGA-YG-AA3N-01 1 169293674 169293674 C T NME7 Missense_Mutation p.R23H 0.22 deleterious(0.01) benign(0.111) TCGA-YG-AA3N-01 1 17029403 17029403 G A ESPNP RNA 0.08 TCGA-YG-AA3N-01 1 170955755 170955755 C T MROH9 Silent p.L261L 0.27 TCGA-YG-AA3N-01 1 170964567 170964567 C T MROH9 Missense_Mutation p.S411F 0.32 deleterious(0) probably_damaging(0.987) TCGA-YG-AA3N-01 1 171080088 171080088 G A FMO3 Silent p.Q259Q 0.28 TCGA-YG-AA3N-01 1 171254449 171254449 G A FMO1 Silent p.T455T 0.37 TCGA-YG-AA3N-01 1 171292206 171292206 A T FMO4 Missense_Mutation p.M66L 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-YG-AA3N-01 1 172113760 172113760 G A DNM3 Intron 0.27 TCGA-YG-AA3N-01 1 17313756 17313756 G A ATP13A2 Silent p.T956T 0.32 TCGA-YG-AA3N-01 1 17313757 17313757 G A ATP13A2 Missense_Mutation p.T956I 0.32 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 1 17327019 17327019 G A ATP13A2 Missense_Mutation p.P239L 0.25 deleterious(0.02) possibly_damaging(0.821) TCGA-YG-AA3N-01 1 173579310 173579310 T A ANKRD45 Nonsense_Mutation p.R259* 0.33 TCGA-YG-AA3N-01 1 173879937 173879937 G A SERPINC1 Silent p.I239I 0.46 TCGA-YG-AA3N-01 1 17395661 17395661 C T PADI2 Missense_Mutation p.G626S 0.35 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3N-01 1 17405717 17405717 C T PADI2 Intron 0.60 TCGA-YG-AA3N-01 1 175335154 175335154 C T TNR Missense_Mutation p.G725E 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 175372508 175372508 C T TNR Silent p.G248G 0.37 TCGA-YG-AA3N-01 1 17601192 17601192 C T PADI3 Silent p.S406S 0.26 TCGA-YG-AA3N-01 1 176525454 176525454 G A PAPPA2 5'UTR 0.24 TCGA-YG-AA3N-01 1 176526064 176526064 G A PAPPA2 Nonsense_Mutation p.W202* 0.29 TCGA-YG-AA3N-01 1 176679309 176679309 C T PAPPA2 Silent p.S1216S 0.28 TCGA-YG-AA3N-01 1 17721516 17721516 G A PADI6 RNA 0.33 TCGA-YG-AA3N-01 1 177245414 177245414 G A BRINP2 Missense_Mutation p.G286S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 1 177249597 177249597 G A BRINP2 Missense_Mutation p.E429K 0.36 deleterious(0.01) possibly_damaging(0.664) TCGA-YG-AA3N-01 1 178269233 178269233 C T RASAL2 Missense_Mutation p.P146L 0.10 deleterious(0.01) benign(0.167) TCGA-YG-AA3N-01 1 179562664 179562664 G A TDRD5 Missense_Mutation p.R101Q 0.26 tolerated(0.08) benign(0.083) TCGA-YG-AA3N-01 1 180904915 180904915 G A KIAA1614 Missense_Mutation p.D624N 0.27 deleterious(0.01) possibly_damaging(0.639) TCGA-YG-AA3N-01 1 18152591 18152591 G A ACTL8 Silent p.E226E 0.26 TCGA-YG-AA3N-01 1 181701914 181701914 G A CACNA1E Missense_Mutation p.E898K 0.30 tolerated(0.33) benign(0.292) TCGA-YG-AA3N-01 1 181731720 181731720 G A CACNA1E Missense_Mutation p.R1539Q 0.16 deleterious(0.01) possibly_damaging(0.553) TCGA-YG-AA3N-01 1 183191315 183191315 A G LAMC2 Silent p.Q244Q 0.29 TCGA-YG-AA3N-01 1 183542340 183542340 C T NCF2 Missense_Mutation p.D197N 0.29 deleterious(0.04) possibly_damaging(0.591) TCGA-YG-AA3N-01 1 185190999 185190999 C T SWT1 Missense_Mutation p.P714S 0.25 tolerated(0.35) benign(0.011) TCGA-YG-AA3N-01 1 186289548 186289548 G A TPR Missense_Mutation p.S2155L 0.25 benign(0.009) TCGA-YG-AA3N-01 1 18809815 18809815 C T KLHDC7A 3'UTR 0.27 TCGA-YG-AA3N-01 1 19166180 19166180 C T TAS1R2 Silent p.K811K 0.39 TCGA-YG-AA3N-01 1 196459060 196459060 C T KCNT2 Silent p.R61R 0.33 TCGA-YG-AA3N-01 1 196965308 196965308 G A CFHR5 Nonsense_Mutation p.W316* 0.18 TCGA-YG-AA3N-01 1 19981621 19981621 C T MINOS1-NBL1 Missense_Mutation p.A33V 0.20 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 1 200558366 200558366 C A KIF14 Missense_Mutation p.M1031I 0.27 deleterious(0.03) possibly_damaging(0.465) TCGA-YG-AA3N-01 1 200945919 200945919 C T KIF21B Silent p.K1476K 0.33 TCGA-YG-AA3N-01 1 201342346 201342346 C T TNNT2 Missense_Mutation p.E13K 0.38 tolerated_low_confidence(0.08) unknown(0) TCGA-YG-AA3N-01 1 202092643 202092643 C T GPR37L1 Silent p.L184L 0.21 TCGA-YG-AA3N-01 1 202097421 202097421 G A GPR37L1 Missense_Mutation p.D395N 0.39 tolerated(0.06) possibly_damaging(0.561) TCGA-YG-AA3N-01 1 202194551 202194551 G A LGR6 Silent p.L71L 0.26 TCGA-YG-AA3N-01 1 202194552 202194552 G A LGR6 Missense_Mutation p.D72N 0.25 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 203140284 203140284 C T MYBPH Missense_Mutation p.G280S 0.35 deleterious(0.01) possibly_damaging(0.839) TCGA-YG-AA3N-01 1 204006177 204006177 A G LINC00303 Intron 0.29 TCGA-YG-AA3N-01 1 204197984 204197984 G A PLEKHA6 Silent p.S919S 0.21 TCGA-YG-AA3N-01 1 204197985 204197985 G A PLEKHA6 Missense_Mutation p.S919F 0.24 deleterious(0) possibly_damaging(0.713) TCGA-YG-AA3N-01 1 205042319 205042319 G A CNTN2 Missense_Mutation p.G990R 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 207135698 207135698 G A FCAMR Missense_Mutation p.A171V 0.31 deleterious(0.02) benign(0.257) TCGA-YG-AA3N-01 1 207300211 207300211 G A C4BPA Nonsense_Mutation p.W287* 0.28 TCGA-YG-AA3N-01 1 207304941 207304941 C T C4BPA Missense_Mutation p.P314S 0.30 tolerated(0.59) benign(0.024) TCGA-YG-AA3N-01 1 207697204 207697204 G A CR1 Missense_Mutation p.G246R 0.22 deleterious(0) probably_damaging(0.962) TCGA-YG-AA3N-01 1 207787754 207787754 G A CR1 Missense_Mutation p.R2194Q 0.46 tolerated(0.35) possibly_damaging(0.875) TCGA-YG-AA3N-01 1 208270140 208270140 G A PLXNA2 Missense_Mutation p.S607F 0.33 deleterious(0.05) benign(0.072) TCGA-YG-AA3N-01 1 20879624 20879625 - A FAM43B Frame_Shift_Ins p.R54Pfs*56 0.27 TCGA-YG-AA3N-01 1 209768386 209768386 C T CAMK1G Missense_Mutation p.R20W 0.23 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 1 209803173 209803173 C T LAMB3 Silent p.R347R 0.16 TCGA-YG-AA3N-01 1 209963101 209963101 C T IRF6 Missense_Mutation p.E364K 0.32 tolerated(0.7) benign(0.124) TCGA-YG-AA3N-01 1 21041998 21041998 G A KIF17 Silent p.F122F 0.40 TCGA-YG-AA3N-01 1 210970886 210970886 C T KCNH1 Missense_Mutation p.E627K 0.34 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 1 212273726 212273726 C T DTL Missense_Mutation p.P465L 0.22 tolerated(0.08) benign(0.003) TCGA-YG-AA3N-01 1 212619178 212619178 C T NENF Missense_Mutation p.L117F 0.39 deleterious(0.02) probably_damaging(0.982) TCGA-YG-AA3N-01 1 212988570 212988570 G A TATDN3 3'UTR 0.36 TCGA-YG-AA3N-01 1 213032433 213032433 C T FLVCR1 Silent p.A213A 0.21 TCGA-YG-AA3N-01 1 214171084 214171084 C T PROX1 Silent p.F402F 0.24 TCGA-YG-AA3N-01 1 214638125 214638125 G A PTPN14 Missense_Mutation p.R8C 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 1 215368341 215368341 G A KCNK2 Nonsense_Mutation p.W290* 0.27 TCGA-YG-AA3N-01 1 215848137 215848137 C T USH2A Missense_Mutation p.M4372I 0.26 benign(0.001) TCGA-YG-AA3N-01 1 215901416 215901416 C T USH2A Missense_Mutation p.D4008N 0.26 probably_damaging(0.959) TCGA-YG-AA3N-01 1 218536709 218536709 C G TGFB2 Nonsense_Mutation p.S127* 0.25 TCGA-YG-AA3N-01 1 222721231 222721231 G A HHIPL2 Silent p.F52F 0.25 TCGA-YG-AA3N-01 1 223116238 223116238 C T DISP1 Missense_Mutation p.P25S 0.25 tolerated_low_confidence(0.11) benign(0.004) TCGA-YG-AA3N-01 1 228444623 228444623 G C OBSCN Silent p.V1619V 0.36 TCGA-YG-AA3N-01 1 228482018 228482018 G A OBSCN Missense_Mutation p.R4195K 0.25 benign(0.409) TCGA-YG-AA3N-01 1 228509797 228509797 G A OBSCN Silent p.G6042G 0.47 TCGA-YG-AA3N-01 1 228521296 228521296 C T OBSCN Missense_Mutation p.P6247L 0.33 benign(0.351) TCGA-YG-AA3N-01 1 228528826 228528826 G A OBSCN Missense_Mutation p.G6867R 0.43 probably_damaging(1) TCGA-YG-AA3N-01 1 228543875 228543875 C T OBSCN Intron 0.27 TCGA-YG-AA3N-01 1 228548176 228548176 G A OBSCN Intron 0.18 TCGA-YG-AA3N-01 1 228879439 228879439 G A RHOU Missense_Mutation p.M243I 0.26 tolerated(0.29) benign(0.002) TCGA-YG-AA3N-01 1 22913057 22913057 C T EPHA8 Missense_Mutation p.A303V 0.41 deleterious(0) benign(0.058) TCGA-YG-AA3N-01 1 23208918 23208918 C T EPHB2 Missense_Mutation p.S457F 0.29 tolerated(0.06) possibly_damaging(0.476) TCGA-YG-AA3N-01 1 232538176 232538176 C T SIPA1L2 Missense_Mutation p.E1662K 0.33 deleterious(0) possibly_damaging(0.613) TCGA-YG-AA3N-01 1 232650684 232650684 G A SIPA1L2 Silent p.F134F 0.30 TCGA-YG-AA3N-01 1 23357052 23357052 G A KDM1A Missense_Mutation p.E148K 0.40 tolerated_low_confidence(0.27) benign(0.008) TCGA-YG-AA3N-01 1 234041391 234041391 C T SLC35F3 Missense_Mutation p.S57L 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YG-AA3N-01 1 235715364 235715364 G A GNG4 3'UTR 0.30 TCGA-YG-AA3N-01 1 236750753 236750753 G A HEATR1 Missense_Mutation p.S555L 0.39 tolerated(0.09) benign(0.062) TCGA-YG-AA3N-01 1 237038056 237038056 C T MTR Missense_Mutation p.P835L 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 237948142 237948142 C T RYR2 Missense_Mutation p.S4377L 0.43 possibly_damaging(0.858) TCGA-YG-AA3N-01 1 238053456 238053456 C T ZP4 Missense_Mutation p.E66K 0.08 tolerated(0.82) benign(0.001) TCGA-YG-AA3N-01 1 240071162 240071162 G A CHRM3 Silent p.G137G 0.29 TCGA-YG-AA3N-01 1 240370306 240370306 G A FMN2 Missense_Mutation p.E732K 0.16 unknown(0) TCGA-YG-AA3N-01 1 241797968 241797968 G A CHML Silent p.L367L 0.34 TCGA-YG-AA3N-01 1 243303400 243303400 G A CEP170 Missense_Mutation p.R1357C 0.26 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 1 24383871 24383871 C T MYOM3 Missense_Mutation p.E1433K 0.25 deleterious(0.02) benign(0.11) TCGA-YG-AA3N-01 1 24447613 24447613 C T IL22RA1 Silent p.G469G 0.30 TCGA-YG-AA3N-01 1 245849766 245849766 C T KIF26B Missense_Mutation p.P1161S 0.35 tolerated(0.91) unknown(0) TCGA-YG-AA3N-01 1 245927367 245927367 G A SMYD3 Silent p.P387P 0.23 TCGA-YG-AA3N-01 1 247150803 247150803 G A ZNF695 Silent p.Y338Y 0.22 TCGA-YG-AA3N-01 1 247263904 247263904 G A ZNF669 Silent p.P389P 0.29 TCGA-YG-AA3N-01 1 247655249 247655249 C T OR2W5 RNA 0.40 TCGA-YG-AA3N-01 1 247737579 247737579 G A GCSAML Silent p.Q101Q 0.37 TCGA-YG-AA3N-01 1 247752561 247752561 G A OR2G2 Silent p.V300V 0.33 TCGA-YG-AA3N-01 1 247921175 247921175 G A OR1C1 Silent p.F178F 0.30 TCGA-YG-AA3N-01 1 248004278 248004278 C T OR11L1 Silent p.R307R 0.23 TCGA-YG-AA3N-01 1 248004389 248004389 G A OR11L1 Silent p.I270I 0.31 TCGA-YG-AA3N-01 1 248031307 248031307 G A TRIM58 Missense_Mutation p.M271I 0.23 tolerated(0.63) benign(0.004) TCGA-YG-AA3N-01 1 248039491 248039491 G A TRIM58 Silent p.L387L 0.30 TCGA-YG-AA3N-01 1 248059772 248059772 G A OR2W3 Missense_Mutation p.R295K 0.29 tolerated(1) benign(0.001) TCGA-YG-AA3N-01 1 248085093 248085093 G A OR2T8 Missense_Mutation p.M258I 0.32 deleterious(0.05) benign(0.097) TCGA-YG-AA3N-01 1 248224880 248224880 C T OR2L3 Silent p.A299A 0.31 TCGA-YG-AA3N-01 1 248308796 248308796 C T OR2M5 Missense_Mutation p.A116V 0.34 deleterious(0) possibly_damaging(0.858) TCGA-YG-AA3N-01 1 248525680 248525680 G A OR2T4 Silent p.R266R 0.31 TCGA-YG-AA3N-01 1 248569944 248569944 C T OR2T1 Missense_Mutation p.P217S 0.29 deleterious(0.04) possibly_damaging(0.58) TCGA-YG-AA3N-01 1 248616912 248616912 G A OR2T2 Missense_Mutation p.D272N 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-YG-AA3N-01 1 248636954 248636954 C T OR2T3 Silent p.G101G 0.21 TCGA-YG-AA3N-01 1 248685351 248685351 T G OR2G6 Missense_Mutation p.I135S 0.26 deleterious(0) benign(0.036) TCGA-YG-AA3N-01 1 24997940 24997940 G A SRRM1 Missense_Mutation p.D822N 0.13 unknown(0) TCGA-YG-AA3N-01 1 25718524 25718524 C T RHCE Missense_Mutation p.D199N 0.35 tolerated(0.27) benign(0.005) TCGA-YG-AA3N-01 1 26669263 26669263 G A AIM1L Silent p.S188S 0.33 TCGA-YG-AA3N-01 1 27238500 27238500 C T NR0B2 Missense_Mutation p.E204K 0.38 tolerated(0.48) benign(0.158) TCGA-YG-AA3N-01 1 27675582 27675582 C T SYTL1 Silent p.F157F 0.27 TCGA-YG-AA3N-01 1 27675583 27675583 C T SYTL1 Missense_Mutation p.P158S 0.28 tolerated(0.23) benign(0.035) TCGA-YG-AA3N-01 1 27876837 27876837 G A AHDC1 Missense_Mutation p.P597L 0.27 deleterious(0) possibly_damaging(0.851) TCGA-YG-AA3N-01 1 3102831 3102831 C T PRDM16 Silent p.F60F 0.29 TCGA-YG-AA3N-01 1 32687996 32687996 T G EIF3I 5'UTR 0.19 TCGA-YG-AA3N-01 1 32742008 32742008 G A LCK Nonsense_Mutation p.W234* 0.34 TCGA-YG-AA3N-01 1 33557669 33557669 C T ADC Nonsense_Mutation p.Q100* 0.32 TCGA-YG-AA3N-01 1 33987079 33987079 G A CSMD2 Silent p.F3383F 0.16 TCGA-YG-AA3N-01 1 33999412 33999412 G A CSMD2 Silent p.T3181T 0.26 TCGA-YG-AA3N-01 1 34006263 34006263 C T CSMD2 Missense_Mutation p.G3021R 0.32 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 1 34285433 34285433 C T CSMD2 Missense_Mutation p.G362E 0.25 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 34330140 34330140 G A HMGB4 Silent p.P116P 0.26 TCGA-YG-AA3N-01 1 34383711 34383711 C T CSMD2 Missense_Mutation p.E262K 0.35 tolerated(0.06) benign(0.158) TCGA-YG-AA3N-01 1 35370148 35370148 G A DLGAP3 Silent p.P279P 0.08 TCGA-YG-AA3N-01 1 35579871 35579871 C T ZMYM1 Missense_Mutation p.R814C 0.24 tolerated(0.1) benign(0.386) TCGA-YG-AA3N-01 1 36639033 36639033 G A MAP7D1 Nonsense_Mutation p.W231* 0.28 TCGA-YG-AA3N-01 1 36824418 36824418 G A STK40 Missense_Mutation p.R40C 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-YG-AA3N-01 1 36824419 36824419 G A STK40 Silent p.P39P 0.24 TCGA-YG-AA3N-01 1 3703839 3703839 G A LRRC47 Silent p.I217I 0.26 TCGA-YG-AA3N-01 1 39879782 39879782 C T KIAA0754 Missense_Mutation p.S1146F 0.37 possibly_damaging(0.449) TCGA-YG-AA3N-01 1 39879783 39879783 C T KIAA0754 Silent p.S1146S 0.37 TCGA-YG-AA3N-01 1 40770180 40770180 G A COL9A2 Missense_Mutation p.P395S 0.31 deleterious(0.05) possibly_damaging(0.876) TCGA-YG-AA3N-01 1 42047943 42047943 G A HIVEP3 Silent p.S842S 0.32 TCGA-YG-AA3N-01 1 42629141 42629141 C T GUCA2A Silent p.P72P 0.26 TCGA-YG-AA3N-01 1 43296223 43296223 C T ERMAP Intron 0.20 TCGA-YG-AA3N-01 1 45292363 45292363 C T PTCH2 Missense_Mutation p.E925K 0.28 tolerated(0.07) benign(0.223) TCGA-YG-AA3N-01 1 45484294 45484294 G A ZSWIM5 Silent p.I1130I 0.36 TCGA-YG-AA3N-01 1 46871375 46871375 C T FAAH Silent p.L232L 0.37 TCGA-YG-AA3N-01 1 47399696 47399696 G A CYP4A11 Missense_Mutation p.L382F 0.15 deleterious(0.01) possibly_damaging(0.732) TCGA-YG-AA3N-01 1 47400191 47400191 C T CYP4A11 Silent p.E277E 0.23 TCGA-YG-AA3N-01 1 4834566 4834566 G A AJAP1 3'UTR 0.30 TCGA-YG-AA3N-01 1 51702469 51702469 C T RNF11 Missense_Mutation p.S14F 0.28 deleterious(0.02) probably_damaging(0.938) TCGA-YG-AA3N-01 1 53995517 53995517 C T GLIS1 Missense_Mutation p.A302T 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-YG-AA3N-01 1 54417827 54417827 C T LRRC42 Missense_Mutation p.S52F 0.46 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 1 55144965 55144965 G A MROH7 Silent p.Q693Q 0.25 TCGA-YG-AA3N-01 1 55151930 55151930 G A MROH7 Splice_Site p.X841_splice 0.38 TCGA-YG-AA3N-01 1 56990009 56990009 G A PPAP2B Missense_Mutation p.S172F 0.38 deleterious(0) possibly_damaging(0.866) TCGA-YG-AA3N-01 1 57140182 57140182 C T PRKAA2 Missense_Mutation p.H75Y 0.25 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 1 57158112 57158112 C T PRKAA2 Nonsense_Mutation p.R138* 0.38 TCGA-YG-AA3N-01 1 57340694 57340694 G A C8A Missense_Mutation p.A82T 0.21 tolerated(0.58) benign(0.015) TCGA-YG-AA3N-01 1 57417826 57417826 C T C8B Silent p.E187E 0.40 TCGA-YG-AA3N-01 1 59042413 59042413 C T TACSTD2 Missense_Mutation p.G139D 0.29 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3N-01 1 62728770 62728770 C T KANK4 Missense_Mutation p.E845K 0.38 deleterious(0.01) benign(0.02) TCGA-YG-AA3N-01 1 65147765 65147765 C T CACHD1 Nonsense_Mutation p.R1137* 0.26 TCGA-YG-AA3N-01 1 65304242 65304242 A G JAK1 Missense_Mutation p.F958S 0.25 deleterious(0) probably_damaging(0.95) TCGA-YG-AA3N-01 1 67896057 67896057 C T SERBP1 5'UTR 0.42 TCGA-YG-AA3N-01 1 70639337 70639337 G A LRRC40 Missense_Mutation p.P345S 0.21 deleterious(0.03) possibly_damaging(0.893) TCGA-YG-AA3N-01 1 75102094 75102094 C T C1orf173 Missense_Mutation p.G158E 0.35 deleterious(0.04) probably_damaging(0.969) TCGA-YG-AA3N-01 1 79383369 79383369 C T ELTD1 Missense_Mutation p.E567K 0.41 tolerated(0.15) benign(0.322) TCGA-YG-AA3N-01 1 82372770 82372770 G A LPHN2 Missense_Mutation p.D48N 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-YG-AA3N-01 1 8390482 8390482 T C SLC45A1 Missense_Mutation p.L310P 0.38 tolerated(0.12) probably_damaging(0.992) TCGA-YG-AA3N-01 1 8390726 8390726 C T SLC45A1 Silent p.I391I 0.32 TCGA-YG-AA3N-01 1 8390727 8390727 C T SLC45A1 Missense_Mutation p.P392S 0.32 tolerated(0.13) benign(0.011) TCGA-YG-AA3N-01 1 8424188 8424188 G A RERE Silent p.F556F 0.43 TCGA-YG-AA3N-01 1 89613293 89613293 T A GBP7 Missense_Mutation p.K441M 0.26 deleterious(0.01) possibly_damaging(0.667) TCGA-YG-AA3N-01 1 89657134 89657134 G A GBP4 Silent p.F242F 0.37 TCGA-YG-AA3N-01 1 89845983 89845983 G A GBP6 Missense_Mutation p.E222K 0.40 tolerated(0.73) possibly_damaging(0.58) TCGA-YG-AA3N-01 1 90048678 90048678 C T LRRC8B Missense_Mutation p.H157Y 0.22 tolerated(0.45) benign(0.001) TCGA-YG-AA3N-01 1 9086363 9086363 G A SLC2A7 Silent p.S14S 0.31 TCGA-YG-AA3N-01 1 93299188 93299188 C T RPL5 Missense_Mutation p.R54C 0.20 tolerated(0.09) possibly_damaging(0.792) TCGA-YG-AA3N-01 1 94054934 94054934 G A BCAR3 Missense_Mutation p.R177C 0.29 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 1 95005887 95005887 C T F3 Nonsense_Mutation p.W46* 0.22 TCGA-YG-AA3N-01 1 9781593 9781593 G A PIK3CD Missense_Mutation p.D635N 0.38 tolerated(0.18) benign(0.006) TCGA-YG-AA3N-01 20 10623213 10623213 C T JAG1 Missense_Mutation p.G832E 0.22 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 20 10623214 10623214 C T JAG1 Missense_Mutation p.G832R 0.22 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 20 10625588 10625588 C T JAG1 Missense_Mutation p.G756E 0.27 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 20 13847488 13847488 C T SEL1L2 Missense_Mutation p.G422R 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 20 1460549 1460549 C T SIRPB2 Missense_Mutation p.E83K 0.37 tolerated(0.19) probably_damaging(0.975) TCGA-YG-AA3N-01 20 1559100 1559100 C T RP4-576H24.4 Missense_Mutation p.S105N 0.22 deleterious(0.01) benign(0.009) TCGA-YG-AA3N-01 20 15866443 15866443 G A MACROD2 Missense_Mutation p.M254I 0.24 tolerated(0.15) benign(0.001) TCGA-YG-AA3N-01 20 17462533 17462533 C T PCSK2 Missense_Mutation p.P579S 0.30 tolerated(0.43) benign(0.036) TCGA-YG-AA3N-01 20 17462534 17462534 C T PCSK2 Missense_Mutation p.P579L 0.29 tolerated(0.67) benign(0.2) TCGA-YG-AA3N-01 20 17597384 17597384 G A RRBP1 Missense_Mutation p.P854L 0.31 deleterious(0.02) benign(0) TCGA-YG-AA3N-01 20 19565691 19565691 C T SLC24A3 Missense_Mutation p.S167L 0.42 deleterious(0) probably_damaging(0.937) TCGA-YG-AA3N-01 20 19698204 19698204 C T SLC24A3 Silent p.S584S 0.07 TCGA-YG-AA3N-01 20 20246061 20246061 G A C20orf26 Intron 0.28 TCGA-YG-AA3N-01 20 20246062 20246062 G A C20orf26 Intron 0.28 TCGA-YG-AA3N-01 20 20278914 20278914 C T C20orf26 Silent p.C1102C 0.33 TCGA-YG-AA3N-01 20 23345245 23345245 T C GZF1 Silent p.T75T 0.32 TCGA-YG-AA3N-01 20 23421091 23421091 C T CSTL1 Nonsense_Mutation p.R63* 0.24 TCGA-YG-AA3N-01 20 2375140 2375140 G A TGM6 Missense_Mutation p.G17D 0.38 tolerated(0.52) possibly_damaging(0.756) TCGA-YG-AA3N-01 20 2376049 2376049 G A TGM6 Missense_Mutation p.E131K 0.32 tolerated(0.26) benign(0.003) TCGA-YG-AA3N-01 20 2559849 2559849 G A TMC2 Missense_Mutation p.E235K 0.18 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 20 2644839 2644839 C T IDH3B 5'UTR 0.18 TCGA-YG-AA3N-01 20 29632699 29632699 T G FRG1B Missense_Mutation p.L172V 0.03 deleterious(0.01) possibly_damaging(0.895) TCGA-YG-AA3N-01 20 30053405 30053405 C T DEFB124 Silent p.R40R 0.28 TCGA-YG-AA3N-01 20 30371701 30371701 A T TPX2 Missense_Mutation p.T464S 0.31 tolerated(0.16) benign(0.078) TCGA-YG-AA3N-01 20 30584954 30584954 G A XKR7 Silent p.R478R 0.36 TCGA-YG-AA3N-01 20 30784221 30784221 G A PLAGL2 3'UTR 0.28 TCGA-YG-AA3N-01 20 31829197 31829197 C T BPIFA1 Silent p.G196G 0.27 TCGA-YG-AA3N-01 20 3211864 3211864 G A SLC4A11 Missense_Mutation p.P368S 0.19 tolerated(0.4) benign(0.02) TCGA-YG-AA3N-01 20 33328330 33328330 G A NCOA6 Silent p.L1910L 0.27 TCGA-YG-AA3N-01 20 33570288 33570288 T C MYH7B Missense_Mutation p.V227A 0.35 benign(0.252) TCGA-YG-AA3N-01 20 35547797 35547797 T G SAMHD1 Silent p.G274G 0.22 TCGA-YG-AA3N-01 20 36789861 36789861 C T TGM2 Missense_Mutation p.E51K 0.22 tolerated(0.14) benign(0.037) TCGA-YG-AA3N-01 20 372134 372134 G A TRIB3 Silent p.Q165Q 0.48 TCGA-YG-AA3N-01 20 39729954 39729954 C T TOP1 Silent p.S423S 0.24 TCGA-YG-AA3N-01 20 39832006 39832006 C T ZHX3 Silent p.Q517Q 0.31 TCGA-YG-AA3N-01 20 40770625 40770625 C T PTPRT Silent p.Q900Q 0.11 TCGA-YG-AA3N-01 20 4163095 4163095 C T SMOX Silent p.I323I 0.35 TCGA-YG-AA3N-01 20 42355031 42355031 C T GTSF1L Missense_Mutation p.D102N 0.32 tolerated(0.08) benign(0.074) TCGA-YG-AA3N-01 20 43850391 43850391 C T SEMG2 Missense_Mutation p.P40S 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-YG-AA3N-01 20 44330762 44330762 C T WFDC13 5'UTR 0.15 TCGA-YG-AA3N-01 20 44352665 44352665 G A SPINT4 Missense_Mutation p.E88K 0.26 deleterious(0.02) benign(0.122) TCGA-YG-AA3N-01 20 44538258 44538258 C T PLTP Missense_Mutation p.G128S 0.19 tolerated(0.33) benign(0.155) TCGA-YG-AA3N-01 20 44589153 44589153 G A ZNF335 Silent p.S598S 0.16 TCGA-YG-AA3N-01 20 44589154 44589154 G A ZNF335 Missense_Mutation p.S598F 0.16 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 20 44684873 44684873 G A SLC12A5 Missense_Mutation p.E981K 0.30 tolerated(0.32) benign(0.05) TCGA-YG-AA3N-01 20 45130023 45130023 C T ZNF334 Missense_Mutation p.G652E 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 20 45130160 45130160 C T ZNF334 Silent p.G606G 0.18 TCGA-YG-AA3N-01 20 47648682 47648682 C T ARFGEF2 Silent p.T1720T 0.18 TCGA-YG-AA3N-01 20 48098528 48098528 C T KCNB1 Missense_Mutation p.D164N 0.17 tolerated(0.11) possibly_damaging(0.866) TCGA-YG-AA3N-01 20 48164438 48164438 C T PTGIS Missense_Mutation p.R106K 0.20 tolerated(0.13) benign(0.005) TCGA-YG-AA3N-01 20 50406908 50406908 G A SALL4 Missense_Mutation p.S705F 0.32 deleterious(0) possibly_damaging(0.467) TCGA-YG-AA3N-01 20 50408700 50408700 C T SALL4 Missense_Mutation p.G108R 0.29 deleterious(0.04) possibly_damaging(0.642) TCGA-YG-AA3N-01 20 51870073 51870073 G A TSHZ2 Missense_Mutation p.E26K 0.32 tolerated(0.92) benign(0.015) TCGA-YG-AA3N-01 20 54575822 54575822 G A CBLN4 Missense_Mutation p.H125Y 0.16 deleterious(0) benign(0.304) TCGA-YG-AA3N-01 20 54579054 54579054 G A CBLN4 Silent p.S58S 0.25 TCGA-YG-AA3N-01 20 54579055 54579055 G A CBLN4 Missense_Mutation p.S58F 0.27 deleterious(0.01) possibly_damaging(0.781) TCGA-YG-AA3N-01 20 55027982 55027982 G A CASS4 Missense_Mutation p.G584R 0.28 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 20 55206274 55206274 G A TFAP2C Missense_Mutation p.G21E 0.17 deleterious(0) benign(0.017) TCGA-YG-AA3N-01 20 55212868 55212868 G A TFAP2C Silent p.T384T 0.24 TCGA-YG-AA3N-01 20 56137772 56137772 C T PCK1 Missense_Mutation p.P143S 0.17 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3N-01 20 5753586 5753587 - A C20orf196 Frame_Shift_Ins p.I26Nfs*31 0.22 TCGA-YG-AA3N-01 20 57767735 57767735 C T ZNF831 Missense_Mutation p.P554L 0.44 tolerated(0.06) benign(0.012) TCGA-YG-AA3N-01 20 58533658 58533658 T G CDH26 5'UTR 0.22 TCGA-YG-AA3N-01 20 58562531 58562531 C T CDH26 Silent p.G287G 0.21 TCGA-YG-AA3N-01 20 61039954 61039954 G A GATA5 Missense_Mutation p.P378S 0.31 tolerated(0.62) benign(0.019) TCGA-YG-AA3N-01 20 61143823 61143823 G A C20orf166 5'Flank 0.23 TCGA-YG-AA3N-01 20 61907993 61907993 T A ARFGAP1 Missense_Mutation p.F111Y 0.19 tolerated(0.7) benign(0.174) TCGA-YG-AA3N-01 20 62321537 62321537 C T RTEL1 Nonsense_Mutation p.Q771* 0.14 TCGA-YG-AA3N-01 20 62871242 62871242 C T MYT1 Missense_Mutation p.R1075C 0.33 probably_damaging(0.999) TCGA-YG-AA3N-01 20 6758963 6758963 C T BMP2 Missense_Mutation p.P140S 0.37 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 20 9360725 9360725 G A PLCB4 Missense_Mutation p.E257K 0.28 deleterious(0) benign(0.074) TCGA-YG-AA3N-01 20 9561157 9561157 G A PAK7 Missense_Mutation p.P209S 0.27 tolerated_low_confidence(0.32) benign(0.003) TCGA-YG-AA3N-01 20 9624898 9624898 G A PAK7 Missense_Mutation p.P27S 0.28 tolerated(0.34) benign(0.423) TCGA-YG-AA3N-01 21 10951266 10951266 C T TPTE Missense_Mutation p.R149K 0.13 deleterious(0.04) benign(0.181) TCGA-YG-AA3N-01 21 10951399 10951399 C T TPTE Missense_Mutation p.D105N 0.12 deleterious(0.02) benign(0.263) TCGA-YG-AA3N-01 21 11029673 11029673 G A BAGE2 RNA 0.11 TCGA-YG-AA3N-01 21 15317364 15317364 G T ANKRD20A11P RNA 0.32 TCGA-YG-AA3N-01 21 27062232 27062232 G A JAM2 Nonsense_Mutation p.W63* 0.34 TCGA-YG-AA3N-01 21 27938637 27938637 C T CYYR1 Missense_Mutation p.G42R 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-YG-AA3N-01 21 30433595 30433595 T C CCT8 Silent p.K476K 0.34 TCGA-YG-AA3N-01 21 31654709 31654709 G A KRTAP24-1 Missense_Mutation p.P181L 0.20 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 21 31869239 31869239 T G KRTAP19-4 Missense_Mutation p.K64Q 0.36 deleterious_low_confidence(0) unknown(0) TCGA-YG-AA3N-01 21 32410651 32410651 C T KRTAP19-8 Missense_Mutation p.G38S 0.23 tolerated_low_confidence(0.53) unknown(0) TCGA-YG-AA3N-01 21 34860611 34860611 C G DNAJC28 Missense_Mutation p.E364Q 0.33 tolerated(0.33) benign(0.031) TCGA-YG-AA3N-01 21 35247788 35247788 G A ITSN1 Nonsense_Mutation p.W1435* 0.21 TCGA-YG-AA3N-01 21 35469436 35469436 G A SLC5A3 Missense_Mutation p.E647K 0.11 tolerated(0.7) benign(0.078) TCGA-YG-AA3N-01 21 37618876 37618876 C T DOPEY2 Missense_Mutation p.S1533F 0.17 deleterious(0.03) probably_damaging(0.95) TCGA-YG-AA3N-01 21 37618877 37618877 C T DOPEY2 Silent p.S1533S 0.18 TCGA-YG-AA3N-01 21 39087326 39087326 C T KCNJ6 Missense_Mutation p.S45N 0.24 tolerated(0.52) benign(0) TCGA-YG-AA3N-01 21 39426919 39426919 G A DSCR4 3'UTR 0.21 TCGA-YG-AA3N-01 21 39580542 39580542 G T DSCR10 RNA 0.27 TCGA-YG-AA3N-01 21 41416186 41416186 C T DSCAM Silent p.R1734R 0.25 TCGA-YG-AA3N-01 21 41725513 41725513 G A DSCAM Silent p.F271F 0.29 TCGA-YG-AA3N-01 21 44841618 44841618 G A SIK1 Silent p.I133I 0.34 TCGA-YG-AA3N-01 21 45389103 45389103 C T AGPAT3 Silent p.D151D 0.15 TCGA-YG-AA3N-01 21 45798946 45798946 G A TRPM2 Missense_Mutation p.D361N 0.36 tolerated(0.05) possibly_damaging(0.79) TCGA-YG-AA3N-01 21 45855087 45855087 C T TRPM2 Missense_Mutation p.P1350S 0.31 tolerated(0.09) benign(0.333) TCGA-YG-AA3N-01 21 46131452 46131452 C T TSPEAR 5'UTR 0.30 TCGA-YG-AA3N-01 21 47821514 47821514 C T PCNT Missense_Mutation p.S1614F 0.33 possibly_damaging(0.831) TCGA-YG-AA3N-01 22 16279248 16279248 C T POTEH Silent p.V325V 0.06 TCGA-YG-AA3N-01 22 16449718 16449718 G C OR11H1 Silent p.L29L 0.08 TCGA-YG-AA3N-01 22 17119563 17119563 C T TPTEP1 RNA 0.29 TCGA-YG-AA3N-01 22 17280779 17280779 G A XKR3 Silent p.F157F 0.37 TCGA-YG-AA3N-01 22 17688027 17688027 C T CECR1 Missense_Mutation p.C159Y 0.28 deleterious(0) probably_damaging(0.923) TCGA-YG-AA3N-01 22 17688095 17688095 G C CECR1 Missense_Mutation p.I136M 0.22 tolerated(0.31) benign(0.016) TCGA-YG-AA3N-01 22 18226647 18226647 G A BID Missense_Mutation p.P95S 0.28 tolerated(0.45) benign(0) TCGA-YG-AA3N-01 22 18364015 18364015 G A MICAL3 Intron 0.32 TCGA-YG-AA3N-01 22 19126741 19126741 G A DGCR14 Silent p.F251F 0.30 TCGA-YG-AA3N-01 22 20759862 20759862 C T ZNF74 Missense_Mutation p.P180L 0.31 tolerated(0.35) possibly_damaging(0.563) TCGA-YG-AA3N-01 22 21133820 21133820 G A SERPIND1 Missense_Mutation p.E74K 0.13 tolerated(0.1) benign(0.138) TCGA-YG-AA3N-01 22 22039181 22039181 G A PPIL2 Silent p.K231K 0.28 TCGA-YG-AA3N-01 22 22869402 22869402 C T ZNF280A Missense_Mutation p.D185N 0.25 tolerated(0.12) benign(0.053) TCGA-YG-AA3N-01 22 23482442 23482442 C T RTDR1 Missense_Mutation p.D56N 0.35 tolerated(0.1) possibly_damaging(0.615) TCGA-YG-AA3N-01 22 23915751 23915751 G A IGLL1 Missense_Mutation p.S115L 0.24 tolerated_low_confidence(0.18) benign(0.007) TCGA-YG-AA3N-01 22 23974206 23974206 C T C22orf43 Missense_Mutation p.G2E 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.848) TCGA-YG-AA3N-01 22 25023413 25023413 G A GGT1 Missense_Mutation p.M345I 0.25 deleterious(0.03) benign(0.219) TCGA-YG-AA3N-01 22 25158440 25158440 G A PIWIL3 Silent p.A9A 0.34 TCGA-YG-AA3N-01 22 26388407 26388407 G A MYO18B Missense_Mutation p.D2079N 0.24 deleterious(0.01) possibly_damaging(0.534) TCGA-YG-AA3N-01 22 26422656 26422656 C T MYO18B Missense_Mutation p.S2239L 0.20 tolerated(0.37) benign(0.009) TCGA-YG-AA3N-01 22 26688975 26688975 C T SEZ6L Missense_Mutation p.P233L 0.26 tolerated(0.11) benign(0.185) TCGA-YG-AA3N-01 22 30953288 30953288 G A GAL3ST1 Missense_Mutation p.S31F 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.883) TCGA-YG-AA3N-01 22 31333869 31333869 C T MORC2 Silent p.K372K 0.33 TCGA-YG-AA3N-01 22 31654282 31654282 C T LIMK2 Missense_Mutation p.S20L 0.28 tolerated(0.08) possibly_damaging(0.837) TCGA-YG-AA3N-01 22 32480551 32480551 C T SLC5A1 Missense_Mutation p.H264Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 22 32754255 32754255 C T RFPL3 Missense_Mutation p.S66L 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-YG-AA3N-01 22 33402537 33402537 G A SYN3 Silent p.S37S 0.23 TCGA-YG-AA3N-01 22 33402538 33402538 G A SYN3 Missense_Mutation p.S37F 0.23 deleterious(0.03) unknown(0) TCGA-YG-AA3N-01 22 33700319 33700319 G A LARGE Silent p.P542P 0.26 TCGA-YG-AA3N-01 22 37329878 37329878 G A CSF2RB Missense_Mutation p.S386N 0.33 deleterious(0.01) benign(0.077) TCGA-YG-AA3N-01 22 37962660 37962660 C T CDC42EP1 Missense_Mutation p.P102S 0.34 tolerated(0.19) benign(0.118) TCGA-YG-AA3N-01 22 39909591 39909591 C T MIEF1 Missense_Mutation p.P219S 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-YG-AA3N-01 22 40068272 40068272 G A CACNA1I Silent p.L1536L 0.35 TCGA-YG-AA3N-01 22 41573477 41573477 C T EP300 Missense_Mutation p.P1921L 0.35 probably_damaging(0.981) TCGA-YG-AA3N-01 22 41791966 41791966 C T TEF 3'UTR 0.28 TCGA-YG-AA3N-01 22 43687092 43687092 G T SCUBE1 Missense_Mutation p.F148L 0.25 tolerated(0.07) benign(0.286) TCGA-YG-AA3N-01 22 46641110 46641110 C T CDPF1 Missense_Mutation p.R84K 0.39 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3N-01 22 46656837 46656837 C T PKDREJ Missense_Mutation p.D795N 0.44 tolerated(1) benign(0.026) TCGA-YG-AA3N-01 22 46759061 46759061 G A CELSR1 3'UTR 0.26 TCGA-YG-AA3N-01 22 46768795 46768795 G A CELSR1 Missense_Mutation p.P2582S 0.30 deleterious(0.02) possibly_damaging(0.654) TCGA-YG-AA3N-01 22 46859700 46859700 C T CELSR1 Missense_Mutation p.E1363K 0.23 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 22 50278029 50278029 C T ZBED4 Missense_Mutation p.S240F 0.23 tolerated(0.2) possibly_damaging(0.553) TCGA-YG-AA3N-01 22 50278030 50278030 C T ZBED4 Silent p.S240S 0.23 TCGA-YG-AA3N-01 2 10074080 10074080 G A TAF1B Silent p.K578K 0.22 TCGA-YG-AA3N-01 2 10187798 10187798 C T KLF11 Missense_Mutation p.P112S 0.19 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 2 102774214 102774214 C T IL1R1 Silent p.F10F 0.23 TCGA-YG-AA3N-01 2 103095679 103095679 C T SLC9A4 Missense_Mutation p.A213V 0.29 tolerated(0.12) benign(0.057) TCGA-YG-AA3N-01 2 103121833 103121833 C T SLC9A4 Silent p.F367F 0.27 TCGA-YG-AA3N-01 2 107050751 107050751 C T RGPD3 Missense_Mutation p.R713K 0.32 tolerated(0.56) benign(0.158) TCGA-YG-AA3N-01 2 107423130 107423130 C T ST6GAL2 3'UTR 0.10 TCGA-YG-AA3N-01 2 108477253 108477253 G A RGPD4 Missense_Mutation p.R597Q 0.34 deleterious(0.04) possibly_damaging(0.602) TCGA-YG-AA3N-01 2 108487605 108487605 G A RGPD4 Missense_Mutation p.E1049K 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-YG-AA3N-01 2 108921089 108921089 G A SULT1C2 Silent p.R156R 0.29 TCGA-YG-AA3N-01 2 110922145 110922145 A G NPHP1 Silent p.N297N 0.33 TCGA-YG-AA3N-01 2 112605306 112605306 G A ANAPC1 Missense_Mutation p.T596I 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-YG-AA3N-01 2 112638330 112638330 G A ANAPC1 Nonsense_Mutation p.R25* 0.23 TCGA-YG-AA3N-01 2 113060815 113060815 C T ZC3H6 Missense_Mutation p.P75S 0.29 deleterious(0.02) unknown(0) TCGA-YG-AA3N-01 2 113060816 113060816 C T ZC3H6 Missense_Mutation p.P75L 0.29 deleterious(0) unknown(0) TCGA-YG-AA3N-01 2 113765423 113765423 G A IL36A Missense_Mutation p.M93I 0.41 tolerated(0.05) benign(0.188) TCGA-YG-AA3N-01 2 119604365 119604365 G A EN1 Silent p.L127L 0.30 TCGA-YG-AA3N-01 2 119729084 119729084 G A MARCO Missense_Mutation p.R145K 0.36 tolerated(1) benign(0.005) TCGA-YG-AA3N-01 2 125530564 125530564 C T CNTNAP5 Nonsense_Mutation p.R907* 0.08 TCGA-YG-AA3N-01 2 128327482 128327482 G A MYO7B Missense_Mutation p.E197K 0.29 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 2 128526533 128526533 G A WDR33 Nonsense_Mutation p.Q83* 0.21 TCGA-YG-AA3N-01 2 12858662 12858662 C T TRIB2 Missense_Mutation p.R77C 0.38 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 2 128747330 128747330 G A SAP130 Nonsense_Mutation p.R556* 0.28 TCGA-YG-AA3N-01 2 130738540 130738540 G A RAB6C 3'UTR 0.27 TCGA-YG-AA3N-01 2 130833030 130833030 C T POTEF Missense_Mutation p.R672K 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.867) TCGA-YG-AA3N-01 2 131984420 131984420 G A POTEE Missense_Mutation p.G279S 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-YG-AA3N-01 2 133541778 133541778 G A NCKAP5 Missense_Mutation p.S869F 0.43 tolerated(0.27) benign(0.004) TCGA-YG-AA3N-01 2 133542514 133542514 C T NCKAP5 Missense_Mutation p.G624R 0.17 tolerated(0.18) benign(0.066) TCGA-YG-AA3N-01 2 138330043 138330043 C T THSD7B Missense_Mutation p.P1117S 0.53 deleterious(0) unknown(0) TCGA-YG-AA3N-01 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.26 tolerated(0.95) unknown(0) TCGA-YG-AA3N-01 2 141004700 141004700 C T LRP1B Missense_Mutation p.E4427K 0.36 benign(0.292) TCGA-YG-AA3N-01 2 141079622 141079622 G A LRP1B Missense_Mutation p.L4184F 0.33 possibly_damaging(0.587) TCGA-YG-AA3N-01 2 141079623 141079623 A T LRP1B Missense_Mutation p.F4183L 0.33 benign(0.153) TCGA-YG-AA3N-01 2 141214110 141214110 C T LRP1B Missense_Mutation p.G3293R 0.21 benign(0.009) TCGA-YG-AA3N-01 2 141739794 141739794 G A LRP1B Missense_Mutation p.P941L 0.15 probably_damaging(0.991) TCGA-YG-AA3N-01 2 1437231 1437231 C T TPO Silent p.I67I 0.31 TCGA-YG-AA3N-01 2 14774291 14774291 C T FAM84A Missense_Mutation p.P63L 0.27 deleterious(0.05) probably_damaging(0.994) TCGA-YG-AA3N-01 2 1488440 1488440 G A TPO Missense_Mutation p.E471K 0.28 tolerated(0.75) benign(0.02) TCGA-YG-AA3N-01 2 149216250 149216250 G A MBD5 5'UTR 0.55 TCGA-YG-AA3N-01 2 1497734 1497734 C T TPO Silent p.F643F 0.33 TCGA-YG-AA3N-01 2 1507821 1507821 G A TPO Missense_Mutation p.E830K 0.40 tolerated(0.61) benign(0.036) TCGA-YG-AA3N-01 2 152425853 152425853 C T NEB Missense_Mutation p.G5822R 0.28 probably_damaging(1) TCGA-YG-AA3N-01 2 152500996 152500996 C T NEB Missense_Mutation p.E2544K 0.36 possibly_damaging(0.601) TCGA-YG-AA3N-01 2 152584399 152584399 T G NEB Missense_Mutation p.T34P 0.22 probably_damaging(0.991) TCGA-YG-AA3N-01 2 15615878 15615878 G A NBAS Missense_Mutation p.S425F 0.18 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 2 158114708 158114708 T G GALNT5 Missense_Mutation p.S38R 0.29 deleterious(0.04) probably_damaging(0.953) TCGA-YG-AA3N-01 2 160734974 160734974 C T LY75-CD302 Missense_Mutation p.M545I 0.33 tolerated(1) benign(0) TCGA-YG-AA3N-01 2 162804148 162804148 C T SLC4A10 Silent p.L726L 0.37 TCGA-YG-AA3N-01 2 167262975 167262975 G A SCN7A Silent p.F1388F 0.24 TCGA-YG-AA3N-01 2 167304175 167304175 G A SCN7A Missense_Mutation p.S445F 0.27 tolerated(0.08) benign(0.007) TCGA-YG-AA3N-01 2 168099380 168099380 G A XIRP2 Missense_Mutation p.R493K 0.30 probably_damaging(0.998) TCGA-YG-AA3N-01 2 168100033 168100033 G A XIRP2 Missense_Mutation p.D711N 0.23 probably_damaging(0.966) TCGA-YG-AA3N-01 2 168108395 168108395 C T XIRP2 Missense_Mutation p.T3498I 0.27 benign(0.046) TCGA-YG-AA3N-01 2 170013902 170013902 A T LRP2 Missense_Mutation p.F4000I 0.14 benign(0.001) TCGA-YG-AA3N-01 2 170053428 170053428 G A LRP2 Silent p.A2897A 0.27 TCGA-YG-AA3N-01 2 170070350 170070350 G A LRP2 Nonsense_Mutation p.R1953* 0.19 TCGA-YG-AA3N-01 2 170396627 170396627 G A FASTKD1 Missense_Mutation p.P627S 0.40 deleterious(0.01) possibly_damaging(0.71) TCGA-YG-AA3N-01 2 171242752 171242752 G A MYO3B Silent p.L448L 0.27 TCGA-YG-AA3N-01 2 171319885 171319885 C T MYO3B Missense_Mutation p.T913I 0.32 tolerated(0.16) benign(0.043) TCGA-YG-AA3N-01 2 171356255 171356255 G A MYO3B Missense_Mutation p.G1076R 0.29 deleterious(0.03) possibly_damaging(0.522) TCGA-YG-AA3N-01 2 171358347 171358347 G A MYO3B Silent p.R1114R 0.27 TCGA-YG-AA3N-01 2 173339753 173339753 G A ITGA6 Nonsense_Mutation p.W361* 0.17 TCGA-YG-AA3N-01 2 175665002 175665002 C T CHN1 Missense_Mutation p.E408K 0.44 tolerated(0.43) probably_damaging(0.959) TCGA-YG-AA3N-01 2 177015087 177015087 C T HOXD3 5'Flank 0.31 TCGA-YG-AA3N-01 2 178372749 178372749 C T AGPS Missense_Mutation p.P533S 0.22 tolerated(0.16) possibly_damaging(0.456) TCGA-YG-AA3N-01 2 179444693 179444693 C T TTN Missense_Mutation p.E22441K 0.31 TCGA-YG-AA3N-01 2 179454367 179454367 A T TTN Missense_Mutation p.D20695E 0.30 TCGA-YG-AA3N-01 2 179459316 179459316 G A TTN Missense_Mutation p.T19302I 0.23 TCGA-YG-AA3N-01 2 179474247 179474247 C T TTN Missense_Mutation p.E17264K 0.36 TCGA-YG-AA3N-01 2 179498578 179498578 C T TTN Silent p.K14216K 0.26 TCGA-YG-AA3N-01 2 179595863 179595863 C T TTN Silent p.Q5843Q 0.26 TCGA-YG-AA3N-01 2 179604684 179604684 C T TTN Missense_Mutation p.E4426K 0.32 TCGA-YG-AA3N-01 2 179606035 179606035 G C TTN Missense_Mutation p.N3975K 0.32 TCGA-YG-AA3N-01 2 179610242 179610242 A T TTN Intron 0.55 TCGA-YG-AA3N-01 2 179610806 179610806 G A TTN Intron 0.35 TCGA-YG-AA3N-01 2 179623779 179623779 C T TTN Missense_Mutation p.G3412E 0.26 TCGA-YG-AA3N-01 2 179736958 179736958 C T CCDC141 Missense_Mutation p.E661K 0.35 tolerated(0.57) benign(0.03) TCGA-YG-AA3N-01 2 18113487 18113487 C T KCNS3 Silent p.I404I 0.33 TCGA-YG-AA3N-01 2 182413331 182413331 C T CERKL Silent p.K384K 0.41 TCGA-YG-AA3N-01 2 183860527 183860527 G A NCKAP1 Missense_Mutation p.P221S 0.32 tolerated(0.72) benign(0.018) TCGA-YG-AA3N-01 2 185801699 185801699 C T ZNF804A Missense_Mutation p.L526F 0.28 tolerated(0.06) benign(0.282) TCGA-YG-AA3N-01 2 185801736 185801736 C T ZNF804A Missense_Mutation p.S538F 0.23 tolerated(0.71) benign(0.015) TCGA-YG-AA3N-01 2 185802587 185802587 G A ZNF804A Missense_Mutation p.G822R 0.37 tolerated(0.41) benign(0.004) TCGA-YG-AA3N-01 2 185802588 185802588 G A ZNF804A Missense_Mutation p.G822E 0.36 tolerated(0.38) benign(0.093) TCGA-YG-AA3N-01 2 186670587 186670587 G A FSIP2 Silent p.K5607K 0.29 TCGA-YG-AA3N-01 2 187693226 187693226 C T ZSWIM2 Missense_Mutation p.E463K 0.39 deleterious(0.01) benign(0.024) TCGA-YG-AA3N-01 2 187693408 187693408 C T ZSWIM2 Missense_Mutation p.G402E 0.43 tolerated(0.28) benign(0.128) TCGA-YG-AA3N-01 2 188250337 188250337 G A CALCRL 5'UTR 0.26 TCGA-YG-AA3N-01 2 189870115 189870115 G A COL3A1 Missense_Mutation p.E991K 0.33 probably_damaging(0.995) TCGA-YG-AA3N-01 2 190044399 190044399 G A COL5A2 5'UTR 0.47 TCGA-YG-AA3N-01 2 1921108 1921108 G A MYT1L Missense_Mutation p.P494L 0.41 deleterious(0.02) benign(0.037) TCGA-YG-AA3N-01 2 196718183 196718183 G A DNAH7 Nonsense_Mutation p.R2889* 0.40 TCGA-YG-AA3N-01 2 196729521 196729521 G A DNAH7 Silent p.I2286I 0.24 TCGA-YG-AA3N-01 2 196750888 196750888 G A DNAH7 Nonsense_Mutation p.R1839* 0.35 TCGA-YG-AA3N-01 2 196825176 196825176 G A DNAH7 Missense_Mutation p.S900F 0.19 deleterious(0) possibly_damaging(0.857) TCGA-YG-AA3N-01 2 197106901 197106901 G A HECW2 Missense_Mutation p.P1186L 0.25 deleterious(0) probably_damaging(0.965) TCGA-YG-AA3N-01 2 201521631 201521631 G A AOX1 Missense_Mutation p.G1048R 0.26 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 2 202509986 202509986 C T MPP4 Missense_Mutation p.E621K 0.30 deleterious(0) possibly_damaging(0.786) TCGA-YG-AA3N-01 2 207171039 207171039 C T ZDBF2 Missense_Mutation p.P596L 0.25 deleterious(0) benign(0.004) TCGA-YG-AA3N-01 2 207171071 207171071 G A ZDBF2 Missense_Mutation p.G607S 0.32 tolerated(0.17) probably_damaging(0.968) TCGA-YG-AA3N-01 2 207474698 207474698 C T ADAM23 Silent p.V808V 0.26 TCGA-YG-AA3N-01 2 207564929 207564929 G A DYTN Silent p.F165F 0.36 TCGA-YG-AA3N-01 2 207823057 207823057 C T CPO Silent p.I100I 0.33 TCGA-YG-AA3N-01 2 207833033 207833033 G A CPO Missense_Mutation p.G275E 0.34 deleterious(0) probably_damaging(0.97) TCGA-YG-AA3N-01 2 209217491 209217491 G A PIKFYVE Silent p.G1943G 0.38 TCGA-YG-AA3N-01 2 209358096 209358096 G A PTH2R Silent p.V455V 0.44 TCGA-YG-AA3N-01 2 211168263 211168263 C T MYL1 Intron 0.21 TCGA-YG-AA3N-01 2 211471566 211471566 A G CPS1 Missense_Mutation p.N704S 0.24 deleterious(0) possibly_damaging(0.803) TCGA-YG-AA3N-01 2 211523383 211523383 C T CPS1 Nonsense_Mutation p.Q1249* 0.18 TCGA-YG-AA3N-01 2 21228375 21228375 C T APOB Missense_Mutation p.V3789I 0.28 benign(0.029) TCGA-YG-AA3N-01 2 21229799 21229799 T C APOB Missense_Mutation p.K3314R 0.27 benign(0.029) TCGA-YG-AA3N-01 2 21260853 21260853 C T APOB Missense_Mutation p.E172K 0.09 benign(0.185) TCGA-YG-AA3N-01 2 214354700 214354700 C T SPAG16 Missense_Mutation p.P319L 0.28 deleterious(0.03) possibly_damaging(0.635) TCGA-YG-AA3N-01 2 219254614 219254614 C T SLC11A1 Missense_Mutation p.R273C 0.37 deleterious(0.02) possibly_damaging(0.893) TCGA-YG-AA3N-01 2 219257709 219257709 C T SLC11A1 Silent p.F390F 0.33 TCGA-YG-AA3N-01 2 219449405 219449405 C T RQCD1 Missense_Mutation p.P131S 0.25 tolerated(0.14) benign(0.235) TCGA-YG-AA3N-01 2 219449406 219449406 C T RQCD1 Missense_Mutation p.P131L 0.25 deleterious(0) probably_damaging(0.954) TCGA-YG-AA3N-01 2 219507633 219507633 G A ZNF142 Silent p.C1202C 0.24 TCGA-YG-AA3N-01 2 219507817 219507817 G A ZNF142 Missense_Mutation p.P1141L 0.40 deleterious(0) possibly_damaging(0.908) TCGA-YG-AA3N-01 2 220075546 220075546 C T ABCB6 Splice_Site p.X715_splice 0.56 TCGA-YG-AA3N-01 2 220088370 220088370 G A ATG9A Silent p.V512V 0.26 TCGA-YG-AA3N-01 2 220090197 220090197 G A ATG9A Missense_Mutation p.P104S 0.21 tolerated(0.27) benign(0.003) TCGA-YG-AA3N-01 2 220326623 220326623 C T SPEG Silent p.F820F 0.39 TCGA-YG-AA3N-01 2 220396617 220396617 G A ASIC4 Silent p.R367R 0.16 TCGA-YG-AA3N-01 2 220466422 220466422 C T STK11IP Silent p.S120S 0.25 TCGA-YG-AA3N-01 2 223168971 223168971 C T CCDC140 Missense_Mutation p.P117L 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.851) TCGA-YG-AA3N-01 2 227660833 227660833 G A IRS1 Silent p.A874A 0.40 TCGA-YG-AA3N-01 2 227917099 227917099 C T COL4A4 Missense_Mutation p.E964K 0.23 unknown(0) TCGA-YG-AA3N-01 2 228783512 228783512 C T DAW1 Silent p.F330F 0.32 TCGA-YG-AA3N-01 2 228882893 228882893 G A SPHKAP Missense_Mutation p.R893C 0.26 deleterious(0.04) benign(0) TCGA-YG-AA3N-01 2 228883841 228883841 C T SPHKAP Missense_Mutation p.E577K 0.30 tolerated(0.89) benign(0.006) TCGA-YG-AA3N-01 2 228884581 228884581 C T SPHKAP Missense_Mutation p.G330D 0.09 tolerated(0.19) benign(0.005) TCGA-YG-AA3N-01 2 228886611 228886611 G A SPHKAP Silent p.I171I 0.19 TCGA-YG-AA3N-01 2 229046360 229046360 G A SPHKAP 5'UTR 0.25 TCGA-YG-AA3N-01 2 230020576 230020576 C T PID1 Silent p.T76T 0.15 TCGA-YG-AA3N-01 2 230231825 230231825 C T DNER Nonsense_Mutation p.W622* 0.39 TCGA-YG-AA3N-01 2 231174676 231174676 G A SP140 Missense_Mutation p.G699E 0.29 tolerated(0.05) possibly_damaging(0.819) TCGA-YG-AA3N-01 2 231742769 231742769 C T ITM2C Silent p.F253F 0.36 TCGA-YG-AA3N-01 2 231775489 231775489 C T GPR55 Missense_Mutation p.M63I 0.29 deleterious(0) possibly_damaging(0.897) TCGA-YG-AA3N-01 2 233349770 233349770 C T ECEL1 Missense_Mutation p.R296Q 0.30 tolerated(0.2) possibly_damaging(0.45) TCGA-YG-AA3N-01 2 233897480 233897480 C T NEU2 Silent p.S33S 0.32 TCGA-YG-AA3N-01 2 234627691 234627691 C T UGT1A4 Silent p.F75F 0.29 TCGA-YG-AA3N-01 2 234676567 234676567 C T UGT1A10 Nonsense_Mutation p.Q354* 0.37 TCGA-YG-AA3N-01 2 234775381 234775381 G A MSL3P1 RNA 0.36 TCGA-YG-AA3N-01 2 236949435 236949435 C T AGAP1 Missense_Mutation p.S614L 0.21 deleterious(0) benign(0.433) TCGA-YG-AA3N-01 2 238287811 238287811 G A COL6A3 Silent p.F655F 0.23 TCGA-YG-AA3N-01 2 238287818 238287818 G A COL6A3 Missense_Mutation p.T653I 0.38 possibly_damaging(0.83) TCGA-YG-AA3N-01 2 238462380 238462380 C T MLPH 3'UTR 0.27 TCGA-YG-AA3N-01 2 239025606 239025606 G A ESPNL Silent p.T306T 0.33 TCGA-YG-AA3N-01 2 241420407 241420407 G A ANKMY1 Missense_Mutation p.T909I 0.24 tolerated(0.07) possibly_damaging(0.589) TCGA-YG-AA3N-01 2 242196119 242196119 G A HDLBP Nonsense_Mutation p.Q185* 0.19 TCGA-YG-AA3N-01 2 24261955 24261955 G A C2orf44 Missense_Mutation p.S137F 0.38 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 2 242756184 242756184 C T NEU4 Silent p.F112F 0.19 TCGA-YG-AA3N-01 2 26677621 26677621 C T DRC1 Missense_Mutation p.L676F 0.33 deleterious(0) possibly_damaging(0.851) TCGA-YG-AA3N-01 2 27121535 27121535 A T DPYSL5 Missense_Mutation p.K56N 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-YG-AA3N-01 2 27373123 27373123 G A TCF23 Missense_Mutation p.V119M 0.37 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 2 27479366 27479366 G A SLC30A3 Silent p.F302F 0.39 TCGA-YG-AA3N-01 2 27600820 27600820 G T ZNF513 Missense_Mutation p.H406Q 0.30 deleterious(0) possibly_damaging(0.537) TCGA-YG-AA3N-01 2 29293903 29293903 G A C2orf71 Silent p.T1075T 0.19 TCGA-YG-AA3N-01 2 31361013 31361013 G A GALNT14 5'UTR 0.23 TCGA-YG-AA3N-01 2 31483695 31483695 G A EHD3 Silent p.E274E 0.24 TCGA-YG-AA3N-01 2 31484448 31484448 G A EHD3 Missense_Mutation p.E317K 0.31 tolerated(0.17) benign(0.003) TCGA-YG-AA3N-01 2 31489581 31489581 G A EHD3 3'UTR 0.40 TCGA-YG-AA3N-01 2 31611142 31611142 C T XDH Missense_Mutation p.G172E 0.38 tolerated(0.41) benign(0.103) TCGA-YG-AA3N-01 2 33413778 33413778 G C LTBP1 Missense_Mutation p.V521L 0.29 tolerated(0.41) benign(0.002) TCGA-YG-AA3N-01 2 33442665 33442665 G A LTBP1 Missense_Mutation p.G583E 0.17 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 2 3517696 3517696 C T ADI1 Missense_Mutation p.E58K 0.09 tolerated(0.21) possibly_damaging(0.463) TCGA-YG-AA3N-01 2 37306366 37306366 G A HEATR5B Missense_Mutation p.L79F 0.23 deleterious(0) probably_damaging(0.965) TCGA-YG-AA3N-01 2 3745017 3745017 G A ALLC Missense_Mutation p.R274Q 0.43 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 2 40392026 40392026 C T SLC8A1 Missense_Mutation p.E713K 0.24 deleterious(0.03) benign(0.14) TCGA-YG-AA3N-01 2 44145207 44145207 G A LRPPRC Silent p.F1035F 0.23 TCGA-YG-AA3N-01 2 44547442 44547442 G A SLC3A1 Silent p.R574R 0.17 TCGA-YG-AA3N-01 2 49190457 49190457 G A FSHR Silent p.A501A 0.17 TCGA-YG-AA3N-01 2 49190458 49190458 G A FSHR Missense_Mutation p.A501V 0.17 deleterious(0) probably_damaging(0.985) TCGA-YG-AA3N-01 2 49191025 49191025 G A FSHR Missense_Mutation p.S312F 0.25 tolerated(0.57) benign(0.077) TCGA-YG-AA3N-01 2 5832990 5832990 C T SOX11 Missense_Mutation p.S46L 0.35 deleterious(0) possibly_damaging(0.702) TCGA-YG-AA3N-01 2 61433994 61433994 G A USP34 Missense_Mutation p.H2983Y 0.33 deleterious(0.05) probably_damaging(0.982) TCGA-YG-AA3N-01 2 63401881 63401881 G A WDPCP Missense_Mutation p.P668S 0.28 tolerated(0.48) benign(0.039) TCGA-YG-AA3N-01 2 7023663 7023663 G A RSAD2 Missense_Mutation p.G170S 0.29 deleterious(0.02) benign(0.292) TCGA-YG-AA3N-01 2 70443564 70443564 G T TIA1 Nonsense_Mutation p.Y217* 0.11 TCGA-YG-AA3N-01 2 70933545 70933545 C T ADD2 5'UTR 0.35 TCGA-YG-AA3N-01 2 73677684 73677684 T C ALMS1 Missense_Mutation p.Y1343H 0.07 probably_damaging(0.996) TCGA-YG-AA3N-01 2 74699807 74699807 G A MRPL53 5'UTR 0.23 TCGA-YG-AA3N-01 2 74719847 74719847 C T TTC31 Silent p.L412L 0.38 TCGA-YG-AA3N-01 2 74782416 74782416 C T DOK1 Missense_Mutation p.R66C 0.30 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 2 75929458 75929458 T C GCFC2 Silent p.Q162Q 0.31 TCGA-YG-AA3N-01 2 79349131 79349131 G A REG1A Missense_Mutation p.M67I 0.29 tolerated(0.15) benign(0.109) TCGA-YG-AA3N-01 2 80101211 80101211 G A CTNNA2 Missense_Mutation p.D199N 0.33 tolerated(0.12) benign(0.181) TCGA-YG-AA3N-01 2 80530980 80530980 C T LRRTM1 5'UTR 0.25 TCGA-YG-AA3N-01 2 80816591 80816591 G A CTNNA2 Missense_Mutation p.E724K 0.16 deleterious(0.02) possibly_damaging(0.805) TCGA-YG-AA3N-01 2 84777181 84777181 G A DNAH6 Silent p.K495K 0.54 TCGA-YG-AA3N-01 2 86459824 86459824 C T REEP1 Silent p.P180P 0.32 TCGA-YG-AA3N-01 2 88472616 88472616 G A THNSL2 5'UTR 0.22 TCGA-YG-AA3N-01 2 89416874 89416874 C T IGKV1-17 Missense_Mutation p.D104N 0.28 deleterious(0) probably_damaging(0.972) TCGA-YG-AA3N-01 2 97278076 97278076 G A KANSL3 Silent p.F343F 0.21 TCGA-YG-AA3N-01 3 102157434 102157434 C T ZPLD1 Missense_Mutation p.P51S 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-YG-AA3N-01 3 107097004 107097004 C T CCDC54 Silent p.I190I 0.34 TCGA-YG-AA3N-01 3 108076802 108076802 G A HHLA2 Missense_Mutation p.G266E 0.31 tolerated(0.2) benign(0.051) TCGA-YG-AA3N-01 3 108117559 108117559 C T MYH15 Silent p.Q1706Q 0.30 TCGA-YG-AA3N-01 3 108172860 108172860 C T MYH15 Missense_Mutation p.E818K 0.27 tolerated(0.14) benign(0.003) TCGA-YG-AA3N-01 3 108626801 108626801 G A GUCA1C 3'UTR 0.28 TCGA-YG-AA3N-01 3 108822736 108822736 G A MORC1 Silent p.F61F 0.34 TCGA-YG-AA3N-01 3 112534776 112534776 G A CD200R1L 3'UTR 0.13 TCGA-YG-AA3N-01 3 113374933 113374933 G A KIAA2018 Missense_Mutation p.H1866Y 0.22 probably_damaging(0.998) TCGA-YG-AA3N-01 3 113505171 113505171 G A ATP6V1A Silent p.E219E 0.32 TCGA-YG-AA3N-01 3 115571368 115571368 G A LSAMP Missense_Mutation p.S204F 0.26 deleterious(0) possibly_damaging(0.866) TCGA-YG-AA3N-01 3 119331863 119331863 G A PLA1A Splice_Site p.X188_splice 0.38 TCGA-YG-AA3N-01 3 120128378 120128378 C T FSTL1 Splice_Site p.X154_splice 0.11 TCGA-YG-AA3N-01 3 121137202 121137202 G A STXBP5L Missense_Mutation p.G1106E 0.27 deleterious(0) probably_damaging(0.928) TCGA-YG-AA3N-01 3 121203977 121203977 C G POLQ Missense_Mutation p.C1895S 0.22 tolerated(0.54) benign(0.009) TCGA-YG-AA3N-01 3 121377122 121377122 G A HCLS1 Missense_Mutation p.P25S 0.30 deleterious(0) possibly_damaging(0.641) TCGA-YG-AA3N-01 3 121613360 121613360 C T SLC15A2 Missense_Mutation p.L13F 0.25 deleterious_low_confidence(0.05) benign(0.027) TCGA-YG-AA3N-01 3 121712163 121712163 G A ILDR1 Missense_Mutation p.S478F 0.29 deleterious(0) possibly_damaging(0.642) TCGA-YG-AA3N-01 3 121774305 121774305 C T CD86 5'UTR 0.25 TCGA-YG-AA3N-01 3 121838396 121838396 C T CD86 3'UTR 0.33 TCGA-YG-AA3N-01 3 121975937 121975937 C T CASR Silent p.F65F 0.28 TCGA-YG-AA3N-01 3 122004063 122004063 G A CASR 3'UTR 0.51 TCGA-YG-AA3N-01 3 124053179 124053179 C T KALRN Missense_Mutation p.S493F 0.27 tolerated(0.07) probably_damaging(0.947) TCGA-YG-AA3N-01 3 128060731 128060731 G A EEFSEC Missense_Mutation p.R481Q 0.19 deleterious(0) probably_damaging(0.964) TCGA-YG-AA3N-01 3 129247835 129247835 G A RHO Missense_Mutation p.V87I 0.28 tolerated(0.15) probably_damaging(0.99) TCGA-YG-AA3N-01 3 130285795 130285795 G A COL6A6 Missense_Mutation p.G511E 0.31 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 130463630 130463630 G A PIK3R4 Missense_Mutation p.R145C 0.32 tolerated(1) benign(0.003) TCGA-YG-AA3N-01 3 131261425 131261425 G A CPNE4 Silent p.F505F 0.07 TCGA-YG-AA3N-01 3 133099073 133099073 G A TMEM108 Missense_Mutation p.R173Q 0.29 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-YG-AA3N-01 3 133166164 133166164 G A BFSP2 Missense_Mutation p.G165S 0.28 tolerated(0.56) benign(0.226) TCGA-YG-AA3N-01 3 133475829 133475829 C T TF Silent p.I282I 0.32 TCGA-YG-AA3N-01 3 13363156 13363156 G A NUP210 Missense_Mutation p.L1699F 0.33 tolerated(0.07) benign(0.004) TCGA-YG-AA3N-01 3 13378304 13378304 G A NUP210 Nonsense_Mutation p.R1223* 0.12 TCGA-YG-AA3N-01 3 13378305 13378305 G A NUP210 Silent p.L1222L 0.13 TCGA-YG-AA3N-01 3 134339633 134339633 C T KY Missense_Mutation p.E184K 0.39 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 3 13860777 13860777 C T WNT7A Silent p.V238V 0.24 TCGA-YG-AA3N-01 3 138738846 138738846 G A PRR23B Missense_Mutation p.R220C 0.27 deleterious(0) possibly_damaging(0.761) TCGA-YG-AA3N-01 3 138738847 138738847 G A PRR23B Silent p.F219F 0.27 TCGA-YG-AA3N-01 3 138739015 138739015 G A PRR23B Silent p.F163F 0.28 TCGA-YG-AA3N-01 3 140122473 140122473 G A CLSTN2 Missense_Mutation p.E79K 0.38 tolerated(0.09) probably_damaging(0.98) TCGA-YG-AA3N-01 3 140167451 140167451 C T CLSTN2 Missense_Mutation p.S293F 0.35 tolerated(0.61) benign(0.119) TCGA-YG-AA3N-01 3 142051283 142051283 G A XRN1 Missense_Mutation p.P1385S 0.31 tolerated_low_confidence(0.26) benign(0) TCGA-YG-AA3N-01 3 14552716 14552716 C T GRIP2 RNA 0.26 TCGA-YG-AA3N-01 3 147128406 147128406 G A ZIC1 Silent p.G169G 0.24 TCGA-YG-AA3N-01 3 14724268 14724268 C T C3orf20 Silent p.A16A 0.35 TCGA-YG-AA3N-01 3 15311304 15311304 G A SH3BP5 Silent p.S137S 0.21 TCGA-YG-AA3N-01 3 155198913 155198913 C T PLCH1 Silent p.T1642T 0.36 TCGA-YG-AA3N-01 3 156009673 156009673 G A KCNAB1 Intron 0.23 TCGA-YG-AA3N-01 3 161221302 161221302 G A OTOL1 Missense_Mutation p.E336K 0.43 deleterious(0.02) probably_damaging(0.955) TCGA-YG-AA3N-01 3 164793768 164793768 G A SI Silent p.I11I 0.36 TCGA-YG-AA3N-01 3 167031835 167031835 G A ZBBX Silent p.F448F 0.33 TCGA-YG-AA3N-01 3 167728027 167728027 G A GOLIM4 3'UTR 0.34 TCGA-YG-AA3N-01 3 169654229 169654229 C T SAMD7 Nonsense_Mutation p.Q382* 0.45 TCGA-YG-AA3N-01 3 170078859 170078859 C T SKIL Missense_Mutation p.P247L 0.24 deleterious(0) benign(0.394) TCGA-YG-AA3N-01 3 170198329 170198329 G A SLC7A14 Missense_Mutation p.S581F 0.48 tolerated(0.42) possibly_damaging(0.514) TCGA-YG-AA3N-01 3 171320999 171320999 G A PLD1 Nonsense_Mutation p.R1032* 0.32 TCGA-YG-AA3N-01 3 172835288 172835288 C T SPATA16 Silent p.E78E 0.18 TCGA-YG-AA3N-01 3 174815009 174815009 G A NAALADL2 Missense_Mutation p.G158E 0.10 tolerated(1) benign(0.004) TCGA-YG-AA3N-01 3 176765313 176765313 C T TBL1XR1 Missense_Mutation p.G243S 0.29 deleterious(0) probably_damaging(0.981) TCGA-YG-AA3N-01 3 178543420 178543420 G A KCNMB2 Missense_Mutation p.R34K 0.32 tolerated(0.78) probably_damaging(0.987) TCGA-YG-AA3N-01 3 178560662 178560662 C T KCNMB2 Silent p.A215A 0.33 TCGA-YG-AA3N-01 3 185970933 185970933 G A DGKG Silent p.L517L 0.28 TCGA-YG-AA3N-01 3 186953377 186953377 C T MASP1 3'UTR 0.38 TCGA-YG-AA3N-01 3 189587161 189587161 G A TP63 Missense_Mutation p.R393Q 0.19 deleterious(0) probably_damaging(0.941) TCGA-YG-AA3N-01 3 189604200 189604200 C T TP63 Missense_Mutation p.P456L 0.23 deleterious(0.01) benign(0.017) TCGA-YG-AA3N-01 3 189604319 189604319 C T TP63 Missense_Mutation p.P496S 0.22 tolerated(0.27) benign(0.003) TCGA-YG-AA3N-01 3 192125896 192125896 G A FGF12 Silent p.S39S 0.26 TCGA-YG-AA3N-01 3 192125907 192125907 C T FGF12 Missense_Mutation p.D36N 0.43 tolerated(0.24) benign(0.001) TCGA-YG-AA3N-01 3 192635435 192635435 G A MB21D2 Silent p.F65F 0.25 TCGA-YG-AA3N-01 3 192980998 192980998 C T HRASLS Missense_Mutation p.R232C 0.34 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 193052812 193052812 C T ATP13A5 Silent p.E340E 0.15 TCGA-YG-AA3N-01 3 194379705 194379705 G A LSG1 Missense_Mutation p.P247L 0.30 tolerated(0.17) benign(0) TCGA-YG-AA3N-01 3 194379710 194379710 G A LSG1 Silent p.A245A 0.32 TCGA-YG-AA3N-01 3 195515632 195515632 G A MUC4 Missense_Mutation p.P940L 0.23 unknown(0) TCGA-YG-AA3N-01 3 196387447 196387447 C T NRROS Silent p.T311T 0.28 TCGA-YG-AA3N-01 3 196387472 196387472 G A NRROS Missense_Mutation p.E320K 0.39 deleterious(0.01) possibly_damaging(0.606) TCGA-YG-AA3N-01 3 196786855 196786855 G A DLG1 Silent p.I829I 0.18 TCGA-YG-AA3N-01 3 21462669 21462669 G A ZNF385D 3'UTR 0.31 TCGA-YG-AA3N-01 3 21606131 21606131 G A ZNF385D Missense_Mutation p.P71S 0.44 tolerated(0.3) probably_damaging(0.968) TCGA-YG-AA3N-01 3 24188252 24188252 C T THRB Missense_Mutation p.G149E 0.38 tolerated(0.19) benign(0.074) TCGA-YG-AA3N-01 3 24188303 24188303 C T THRB Missense_Mutation p.R132K 0.23 deleterious(0) probably_damaging(0.968) TCGA-YG-AA3N-01 3 26751271 26751271 G A LRRC3B Silent p.K36K 0.09 TCGA-YG-AA3N-01 3 2928874 2928874 G A CNTN4 Silent p.G302G 0.18 TCGA-YG-AA3N-01 3 33135758 33135758 G A TMPPE 5'UTR 0.55 TCGA-YG-AA3N-01 3 33135759 33135759 G T TMPPE 5'UTR 0.55 TCGA-YG-AA3N-01 3 35763301 35763301 G A ARPP21 Silent p.R366R 0.42 TCGA-YG-AA3N-01 3 35770828 35770828 G A ARPP21 Missense_Mutation p.G386E 0.36 deleterious(0) benign(0.343) TCGA-YG-AA3N-01 3 35780847 35780847 G A ARPP21 Silent p.L562L 0.36 TCGA-YG-AA3N-01 3 36570342 36570342 G A STAC Silent p.G325G 0.26 TCGA-YG-AA3N-01 3 36779325 36779325 G A DCLK3 Missense_Mutation p.L276F 0.27 deleterious(0.03) benign(0.06) TCGA-YG-AA3N-01 3 36874102 36874102 C T TRANK1 Silent p.R2280R 0.29 TCGA-YG-AA3N-01 3 37574936 37574936 G A ITGA9 Missense_Mutation p.G502D 0.23 deleterious(0) probably_damaging(0.973) TCGA-YG-AA3N-01 3 38591850 38591850 G A SCN5A Missense_Mutation p.P2005S 0.21 tolerated_low_confidence(0.71) possibly_damaging(0.761) TCGA-YG-AA3N-01 3 38603922 38603922 C T SCN5A Missense_Mutation p.R1316Q 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-YG-AA3N-01 3 38764945 38764945 C T SCN10A Missense_Mutation p.E1110K 0.30 deleterious(0.02) possibly_damaging(0.595) TCGA-YG-AA3N-01 3 39171797 39171797 C T TTC21A Missense_Mutation p.S763F 0.20 tolerated(0.64) benign(0.114) TCGA-YG-AA3N-01 3 39227330 39227330 C T XIRP1 Missense_Mutation p.A1203T 0.43 tolerated(0.18) benign(0.03) TCGA-YG-AA3N-01 3 42244328 42244328 C T TRAK1 Intron 0.27 TCGA-YG-AA3N-01 3 42251674 42251674 G A TRAK1 Intron 0.24 TCGA-YG-AA3N-01 3 44684075 44684075 A T ZNF197 Missense_Mutation p.N485Y 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-YG-AA3N-01 3 44700902 44700902 C T ZNF35 Silent p.L349L 0.32 TCGA-YG-AA3N-01 3 45807207 45807207 G A SLC6A20 Silent p.F375F 0.29 TCGA-YG-AA3N-01 3 46399791 46399791 C T CCR2 Missense_Mutation p.P258L 0.20 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 3 47045766 47045766 C T NBEAL2 Silent p.P2027P 0.25 TCGA-YG-AA3N-01 3 48621194 48621194 C T COL7A1 Missense_Mutation p.G1433E 0.26 unknown(0) TCGA-YG-AA3N-01 3 48627035 48627035 G A COL7A1 Missense_Mutation p.H723Y 0.26 unknown(0) TCGA-YG-AA3N-01 3 48627036 48627036 G A COL7A1 Silent p.A722A 0.27 TCGA-YG-AA3N-01 3 49165969 49165969 G A LAMB2 Missense_Mutation p.P647L 0.27 tolerated(0.13) benign(0.03) TCGA-YG-AA3N-01 3 49405915 49405915 G A RHOA Missense_Mutation p.P75S 0.29 tolerated(0.06) possibly_damaging(0.552) TCGA-YG-AA3N-01 3 49691306 49691306 C T BSN Silent p.P1439P 0.35 TCGA-YG-AA3N-01 3 50225141 50225141 C T SEMA3F Missense_Mutation p.R651C 0.42 deleterious(0) possibly_damaging(0.582) TCGA-YG-AA3N-01 3 50357092 50357092 G A HYAL2 Missense_Mutation p.R277C 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 50385333 50385333 C T NPRL2 Splice_Site p.X311_splice 0.37 TCGA-YG-AA3N-01 3 50413089 50413089 C T CACNA2D2 Silent p.R631R 0.42 TCGA-YG-AA3N-01 3 50425041 50425041 C T CACNA2D2 Silent p.E156E 0.23 TCGA-YG-AA3N-01 3 51352419 51352419 A G DOCK3 Missense_Mutation p.K1088E 0.27 deleterious(0) possibly_damaging(0.869) TCGA-YG-AA3N-01 3 51690159 51690159 C T RAD54L2 Missense_Mutation p.L1067F 0.19 tolerated(0.91) benign(0.003) TCGA-YG-AA3N-01 3 51930900 51930900 G A IQCF1 Missense_Mutation p.P40L 0.29 tolerated(0.4) benign(0) TCGA-YG-AA3N-01 3 52470029 52470029 G A SEMA3G Missense_Mutation p.R647C 0.35 deleterious(0) possibly_damaging(0.677) TCGA-YG-AA3N-01 3 52470030 52470030 G A SEMA3G Silent p.S646S 0.36 TCGA-YG-AA3N-01 3 52512495 52512495 C T NISCH Missense_Mutation p.P402S 0.35 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 52512496 52512496 C A NISCH Missense_Mutation p.P402Q 0.33 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 52526375 52526375 C T NISCH Silent p.G1464G 0.26 TCGA-YG-AA3N-01 3 52543933 52543933 G A STAB1 Missense_Mutation p.G799R 0.38 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 52550201 52550201 G A STAB1 Missense_Mutation p.G1364E 0.44 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 3 54922011 54922011 C T CACNA2D3 Silent p.V694V 0.17 TCGA-YG-AA3N-01 3 54952654 54952654 G A LRTM1 Silent p.I290I 0.22 TCGA-YG-AA3N-01 3 56026239 56026239 A G ERC2 Missense_Mutation p.F701L 0.30 tolerated(1) benign(0.004) TCGA-YG-AA3N-01 3 57898130 57898130 C T SLMAP Silent p.I540I 0.09 TCGA-YG-AA3N-01 3 57898164 57898164 G T SLMAP Nonsense_Mutation p.E552* 0.25 TCGA-YG-AA3N-01 3 58155428 58155428 C T FLNB Missense_Mutation p.S2541L 0.29 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 3 58635048 58635048 C T FAM3D Missense_Mutation p.E47K 0.29 tolerated(0.25) benign(0.003) TCGA-YG-AA3N-01 3 58635049 58635049 C T FAM3D Silent p.K46K 0.29 TCGA-YG-AA3N-01 3 65341899 65341899 C T MAGI1 3'Flank 0.25 TCGA-YG-AA3N-01 3 65342514 65342514 C T MAGI1 Missense_Mutation p.E1310K 0.24 tolerated(0.58) benign(0.439) TCGA-YG-AA3N-01 3 67054691 67054691 C T KBTBD8 Missense_Mutation p.H434Y 0.34 tolerated(1) benign(0.131) TCGA-YG-AA3N-01 3 6903211 6903211 G A GRM7 Missense_Mutation p.E46K 0.33 tolerated(0.07) benign(0.17) TCGA-YG-AA3N-01 3 71247165 71247165 G A FOXP1 Silent p.L79L 0.24 TCGA-YG-AA3N-01 3 73432568 73432568 G A PDZRN3 Missense_Mutation p.S1050F 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 3 74349069 74349069 C T CNTN3 Missense_Mutation p.E706K 0.32 deleterious(0.01) benign(0.43) TCGA-YG-AA3N-01 3 74350688 74350688 G A CNTN3 Silent p.V652V 0.23 TCGA-YG-AA3N-01 3 75679964 75679964 C T MIR1324 RNA 0.09 TCGA-YG-AA3N-01 3 7782109 7782109 G A GRM7 3'UTR 0.23 TCGA-YG-AA3N-01 3 79067655 79067655 G A ROBO1 Intron 0.50 TCGA-YG-AA3N-01 3 88190204 88190204 T C ZNF654 Intron 0.40 TCGA-YG-AA3N-01 3 9166500 9166500 C T SRGAP3 Missense_Mutation p.A57T 0.22 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 3 95374099 95374099 C T MTHFD2P1 RNA 0.24 TCGA-YG-AA3N-01 3 96706614 96706614 C T EPHA6 Silent p.F297F 0.37 TCGA-YG-AA3N-01 3 97806209 97806209 C T OR5AC2 Missense_Mutation p.L65F 0.30 deleterious(0) benign(0.32) TCGA-YG-AA3N-01 3 97851676 97851676 G A OR5H1 Silent p.L45L 0.27 TCGA-YG-AA3N-01 3 98531182 98531182 G A DCBLD2 Missense_Mutation p.P453S 0.15 tolerated(0.46) benign(0.002) TCGA-YG-AA3N-01 3 9874926 9874926 G A TTLL3 Missense_Mutation p.E708K 0.26 deleterious(0) benign(0.355) TCGA-YG-AA3N-01 3 99513560 99513560 G A COL8A1 Missense_Mutation p.G272D 0.47 deleterious(0) unknown(0) TCGA-YG-AA3N-01 4 100126031 100126031 C T ADH6 Intron 0.26 TCGA-YG-AA3N-01 4 100131343 100131343 C T ADH6 Missense_Mutation p.E155K 0.36 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 4 100349656 100349656 C T ADH7 Silent p.V104V 0.21 TCGA-YG-AA3N-01 4 100349741 100349741 C T ADH7 Missense_Mutation p.G76E 0.26 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3N-01 4 100474956 100474956 G A TRMT10A Missense_Mutation p.H211Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 4 102816550 102816550 T A BANK1 Missense_Mutation p.I331N 0.21 tolerated(0.46) benign(0.406) TCGA-YG-AA3N-01 4 10445519 10445519 G A ZNF518B Missense_Mutation p.P812S 0.35 tolerated(0.08) possibly_damaging(0.554) TCGA-YG-AA3N-01 4 104510829 104510829 G A TACR3 3'UTR 0.38 TCGA-YG-AA3N-01 4 104579457 104579457 G A TACR3 Nonsense_Mutation p.Q218* 0.24 TCGA-YG-AA3N-01 4 106600675 106600675 G A ARHGEF38 3'UTR 0.09 TCGA-YG-AA3N-01 4 106863468 106863468 C T NPNT Silent p.I286I 0.22 TCGA-YG-AA3N-01 4 107037521 107037521 G A TBCK Silent p.I750I 0.39 TCGA-YG-AA3N-01 4 111430879 111430879 G A ENPEP Silent p.T370T 0.28 TCGA-YG-AA3N-01 4 114452405 114452405 G A CAMK2D Missense_Mutation p.P190S 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-YG-AA3N-01 4 114823868 114823868 C T ARSJ Nonsense_Mutation p.W454* 0.36 TCGA-YG-AA3N-01 4 115856387 115856387 A C NDST4 Missense_Mutation p.L504R 0.38 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 4 118005641 118005641 G A TRAM1L1 Silent p.S303S 0.46 TCGA-YG-AA3N-01 4 119610601 119610601 G A METTL14 Missense_Mutation p.E78K 0.28 tolerated_low_confidence(0.37) benign(0.138) TCGA-YG-AA3N-01 4 119951129 119951129 G A SYNPO2 Missense_Mutation p.R400Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 4 121958004 121958004 G A NDNF Silent p.V374V 0.34 TCGA-YG-AA3N-01 4 123270623 123270623 C T KIAA1109 Missense_Mutation p.P4486L 0.24 probably_damaging(0.999) TCGA-YG-AA3N-01 4 123333838 123333838 G A ADAD1 Missense_Mutation p.D375N 0.35 tolerated(0.1) benign(0.026) TCGA-YG-AA3N-01 4 126370206 126370206 T C FAT4 Silent p.L2679L 0.33 TCGA-YG-AA3N-01 4 126412521 126412521 C T FAT4 Silent p.F4848F 0.31 TCGA-YG-AA3N-01 4 126412789 126412789 C T FAT4 Missense_Mutation p.P4938S 0.28 probably_damaging(0.998) TCGA-YG-AA3N-01 4 13339601 13339601 G A HSP90AB2P RNA 0.27 TCGA-YG-AA3N-01 4 134071175 134071175 G A PCDH10 5'UTR 0.16 TCGA-YG-AA3N-01 4 134073446 134073446 C T PCDH10 Silent p.I717I 0.09 TCGA-YG-AA3N-01 4 134084392 134084392 G A PCDH10 Missense_Mutation p.G1020R 0.30 tolerated_low_confidence(0.11) possibly_damaging(0.462) TCGA-YG-AA3N-01 4 138453062 138453062 G A PCDH18 Missense_Mutation p.P61S 0.30 tolerated(1) benign(0.023) TCGA-YG-AA3N-01 4 140811324 140811324 G A MAML3 Silent p.N422N 0.49 TCGA-YG-AA3N-01 4 141483426 141483426 G A UCP1 Missense_Mutation p.P244S 0.35 tolerated(0.7) benign(0.016) TCGA-YG-AA3N-01 4 144922401 144922401 C T GYPB Missense_Mutation p.V25M 0.22 tolerated(0.18) probably_damaging(0.961) TCGA-YG-AA3N-01 4 145567905 145567905 G A HHIP Silent p.G26G 0.31 TCGA-YG-AA3N-01 4 146436040 146436040 G A SMAD1 Nonsense_Mutation p.W92* 0.29 TCGA-YG-AA3N-01 4 146436041 146436041 G A SMAD1 Nonsense_Mutation p.W92* 0.29 TCGA-YG-AA3N-01 4 146807170 146807170 G A ZNF827 Silent p.I469I 0.24 TCGA-YG-AA3N-01 4 146823396 146823396 G A ZNF827 Missense_Mutation p.P339S 0.45 deleterious_low_confidence(0.01) benign(0.144) TCGA-YG-AA3N-01 4 151504800 151504800 G A MAB21L2 Missense_Mutation p.G207R 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 4 151773741 151773741 C T LRBA Missense_Mutation p.E1041K 0.34 tolerated_low_confidence(0.26) benign(0.001) TCGA-YG-AA3N-01 4 152609882 152609882 C T PET112 Missense_Mutation p.V411M 0.14 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3N-01 4 153784866 153784866 G A ARFIP1 Missense_Mutation p.G68S 0.32 tolerated(0.09) benign(0.001) TCGA-YG-AA3N-01 4 154709584 154709584 G A SFRP2 Missense_Mutation p.P135L 0.36 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 155161929 155161929 C T DCHS2 Silent p.V1918V 0.29 TCGA-YG-AA3N-01 4 16510269 16510269 C T LDB2 Silent p.R260R 0.32 TCGA-YG-AA3N-01 4 165961476 165961476 G A TRIM60 Silent p.R84R 0.34 TCGA-YG-AA3N-01 4 165962658 165962658 C T TRIM60 3'UTR 0.45 TCGA-YG-AA3N-01 4 166916277 166916277 C T TLL1 Silent p.F193F 0.25 TCGA-YG-AA3N-01 4 166964560 166964560 C T TLL1 Nonsense_Mutation p.Q505* 0.29 TCGA-YG-AA3N-01 4 166996050 166996050 G A TLL1 Missense_Mutation p.D737N 0.33 tolerated(0.6) benign(0.008) TCGA-YG-AA3N-01 4 167656203 167656203 C T SPOCK3 Missense_Mutation p.D394N 0.30 tolerated_low_confidence(0.18) probably_damaging(0.999) TCGA-YG-AA3N-01 4 168155154 168155154 C T SPOCK3 Silent p.Q57Q 0.33 TCGA-YG-AA3N-01 4 169341477 169341477 G A DDX60L Missense_Mutation p.P817S 0.21 deleterious(0) probably_damaging(0.956) TCGA-YG-AA3N-01 4 169837075 169837075 A T PALLD Missense_Mutation p.D916V 0.21 tolerated(0.29) probably_damaging(0.997) TCGA-YG-AA3N-01 4 169837076 169837076 C T PALLD Silent p.D916D 0.21 TCGA-YG-AA3N-01 4 175897533 175897533 C T ADAM29 Missense_Mutation p.S286L 0.22 tolerated(0.06) benign(0.021) TCGA-YG-AA3N-01 4 177605038 177605038 C T VEGFC 3'UTR 0.22 TCGA-YG-AA3N-01 4 1807350 1807350 G A FGFR3 Silent p.G535G 0.18 TCGA-YG-AA3N-01 4 183676005 183676005 C T TENM3 Silent p.I1495I 0.25 TCGA-YG-AA3N-01 4 183713575 183713575 C T TENM3 Missense_Mutation p.P1917L 0.25 deleterious(0.04) possibly_damaging(0.908) TCGA-YG-AA3N-01 4 183714004 183714004 G A TENM3 Missense_Mutation p.G2060E 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-YG-AA3N-01 4 186544533 186544533 C T SORBS2 Missense_Mutation p.E780K 0.34 deleterious(0.01) possibly_damaging(0.493) TCGA-YG-AA3N-01 4 186548137 186548137 C T SORBS2 Silent p.R357R 0.33 TCGA-YG-AA3N-01 4 187000075 187000075 G A TLR3 Missense_Mutation p.E175K 0.44 tolerated(0.22) benign(0.144) TCGA-YG-AA3N-01 4 187178388 187178388 C T KLKB1 Nonsense_Mutation p.Q532* 0.22 TCGA-YG-AA3N-01 4 187455635 187455635 C T MTNR1A Silent p.S87S 0.31 TCGA-YG-AA3N-01 4 187534328 187534328 G A FAT1 Missense_Mutation p.T3133I 0.18 possibly_damaging(0.795) TCGA-YG-AA3N-01 4 189012810 189012810 G A TRIML2 Missense_Mutation p.S294L 0.33 tolerated(0.53) possibly_damaging(0.843) TCGA-YG-AA3N-01 4 189012911 189012911 C T TRIML2 Silent p.V260V 0.30 TCGA-YG-AA3N-01 4 189063528 189063528 G A TRIML1 Silent p.R209R 0.24 TCGA-YG-AA3N-01 4 189064826 189064826 C T TRIML1 Intron 0.44 TCGA-YG-AA3N-01 4 189068251 189068251 C T TRIML1 Silent p.L378L 0.09 TCGA-YG-AA3N-01 4 20598093 20598093 G A SLIT2 Missense_Mutation p.D1126N 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3N-01 4 20611720 20611720 G A SLIT2 Silent p.G1259G 0.27 TCGA-YG-AA3N-01 4 2272491 2272491 G A ZFYVE28 Silent p.F875F 0.18 TCGA-YG-AA3N-01 4 22749262 22749262 C T GBA3 Silent p.S210S 0.31 TCGA-YG-AA3N-01 4 25005663 25005663 G A LGI2 Silent p.L350L 0.36 TCGA-YG-AA3N-01 4 25026467 25026467 G A LGI2 Missense_Mutation p.R130C 0.14 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 4 265741 265741 C T ZNF732 Missense_Mutation p.G302E 0.44 deleterious(0.04) benign(0.436) TCGA-YG-AA3N-01 4 3029657 3029657 A C GRK4 Missense_Mutation p.D330A 0.24 deleterious(0) probably_damaging(0.96) TCGA-YG-AA3N-01 4 3319038 3319038 C T RGS12 Missense_Mutation p.P381S 0.30 tolerated(0.18) benign(0.197) TCGA-YG-AA3N-01 4 3447831 3447831 C T HGFAC Missense_Mutation p.P389S 0.29 tolerated(0.55) benign(0.001) TCGA-YG-AA3N-01 4 36093613 36093613 C T ARAP2 Missense_Mutation p.G1439R 0.25 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 36212085 36212085 G A ARAP2 Missense_Mutation p.P472S 0.29 deleterious(0) probably_damaging(0.978) TCGA-YG-AA3N-01 4 37903721 37903721 A G TBC1D1 Missense_Mutation p.E2G 0.35 deleterious_low_confidence(0) benign(0.309) TCGA-YG-AA3N-01 4 38051415 38051415 C T TBC1D1 Silent p.I602I 0.28 TCGA-YG-AA3N-01 4 40438518 40438518 C T RBM47 Missense_Mutation p.E424K 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-YG-AA3N-01 4 41984092 41984092 G A DCAF4L1 Missense_Mutation p.E95K 0.29 deleterious(0.03) benign(0.126) TCGA-YG-AA3N-01 4 4198967 4198967 G A OTOP1 Missense_Mutation p.R532C 0.28 tolerated(0.19) benign(0.011) TCGA-YG-AA3N-01 4 42145822 42145822 G A BEND4 Missense_Mutation p.S226L 0.26 deleterious_low_confidence(0.03) benign(0.037) TCGA-YG-AA3N-01 4 42403547 42403547 G A SHISA3 3'UTR 0.44 TCGA-YG-AA3N-01 4 42554524 42554524 G A ATP8A1 Missense_Mutation p.P506L 0.23 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 43032575 43032575 G A GRXCR1 3'UTR 0.35 TCGA-YG-AA3N-01 4 46043062 46043062 G A GABRG1 Silent p.F447F 0.33 TCGA-YG-AA3N-01 4 46043257 46043257 G A GABRG1 Silent p.L382L 0.31 TCGA-YG-AA3N-01 4 46099293 46099293 G A GABRG1 Missense_Mutation p.H60Y 0.31 tolerated(0.96) benign(0.006) TCGA-YG-AA3N-01 4 46252404 46252404 G T GABRA2 Missense_Mutation p.P426Q 0.39 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 4 46305590 46305590 C T GABRA2 Missense_Mutation p.R248K 0.19 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 4 46312229 46312229 G A GABRA2 Missense_Mutation p.P174S 0.25 deleterious(0) possibly_damaging(0.461) TCGA-YG-AA3N-01 4 47647147 47647147 G A CORIN Silent p.I636I 0.29 TCGA-YG-AA3N-01 4 48165750 48165750 C T TEC Missense_Mutation p.G236R 0.28 tolerated(0.26) benign(0.249) TCGA-YG-AA3N-01 4 48591848 48591848 G A FRYL Silent p.I518I 0.33 TCGA-YG-AA3N-01 4 48990625 48990625 C T CWH43 Missense_Mutation p.P59S 0.29 tolerated(0.12) benign(0.049) TCGA-YG-AA3N-01 4 54347919 54347919 G A LNX1 Missense_Mutation p.P485S 0.22 tolerated(0.22) benign(0.028) TCGA-YG-AA3N-01 4 54347920 54347920 G A LNX1 Silent p.S484S 0.22 TCGA-YG-AA3N-01 4 54364984 54364984 G A LNX1 Missense_Mutation p.P268S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-YG-AA3N-01 4 55156679 55156679 C T PDGFRA Missense_Mutation p.P1027L 0.36 deleterious(0) possibly_damaging(0.664) TCGA-YG-AA3N-01 4 55561755 55561755 C T KIT Missense_Mutation p.R49C 0.24 deleterious(0.05) possibly_damaging(0.545) TCGA-YG-AA3N-01 4 5564797 5564797 G A EVC2 Silent p.F1235F 0.25 TCGA-YG-AA3N-01 4 55971102 55971102 C T KDR Silent p.E565E 0.27 TCGA-YG-AA3N-01 4 57182680 57182680 C T KIAA1211 Silent p.S1004S 0.57 TCGA-YG-AA3N-01 4 57796087 57796087 C T REST Missense_Mutation p.H355Y 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 4 68795740 68795740 C T TMPRSS11A Silent p.V116V 0.26 TCGA-YG-AA3N-01 4 69343346 69343346 G A TMPRSS11E Missense_Mutation p.G323S 0.07 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 69403445 69403445 G A UGT2B17 Silent p.F497F 0.68 TCGA-YG-AA3N-01 4 69968552 69968552 G A UGT2B7 Missense_Mutation p.G300R 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-YG-AA3N-01 4 70465076 70465076 G A UGT2A1 Missense_Mutation p.A461V 0.34 deleterious(0.02) probably_damaging(0.951) TCGA-YG-AA3N-01 4 70823369 70823369 C T CSN2 Missense_Mutation p.E100K 0.32 tolerated(0.08) benign(0.011) TCGA-YG-AA3N-01 4 71027332 71027332 C T C4orf40 3'UTR 0.14 TCGA-YG-AA3N-01 4 71027333 71027333 C A C4orf40 3'UTR 0.14 TCGA-YG-AA3N-01 4 71068599 71068599 G A ODAM Missense_Mutation p.D259N 0.36 tolerated(0.17) benign(0.027) TCGA-YG-AA3N-01 4 71114955 71114955 C T CSN3 Missense_Mutation p.R110C 0.25 deleterious(0.02) possibly_damaging(0.748) TCGA-YG-AA3N-01 4 71275634 71275634 C T PROL1 Missense_Mutation p.P197S 0.24 tolerated_low_confidence(0.25) unknown(0) TCGA-YG-AA3N-01 4 77272153 77272153 G A CCDC158 Missense_Mutation p.S887F 0.31 tolerated(0.08) probably_damaging(0.992) TCGA-YG-AA3N-01 4 77317556 77317556 G A CCDC158 Missense_Mutation p.P52S 0.29 tolerated(0.2) probably_damaging(0.994) TCGA-YG-AA3N-01 4 80246907 80246907 G A NAA11 Missense_Mutation p.S42F 0.08 deleterious(0) probably_damaging(0.957) TCGA-YG-AA3N-01 4 80328995 80328995 C T GK2 Silent p.Q120Q 0.08 TCGA-YG-AA3N-01 4 81196136 81196136 G A FGF5 Silent p.A143A 0.17 TCGA-YG-AA3N-01 4 81967524 81967524 G A BMP3 Missense_Mutation p.E317K 0.32 tolerated(0.13) benign(0.021) TCGA-YG-AA3N-01 4 81974663 81974663 G A BMP3 Missense_Mutation p.M464I 0.32 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 82125799 82125799 C T PRKG2 Missense_Mutation p.D135N 0.07 tolerated(0.24) possibly_damaging(0.524) TCGA-YG-AA3N-01 4 84026158 84026158 A T PLAC8 Missense_Mutation p.F45Y 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-YG-AA3N-01 4 85564282 85564282 G A CDS1 Missense_Mutation p.A380T 0.36 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 4 85738605 85738605 G A WDFY3 Silent p.L609L 0.25 TCGA-YG-AA3N-01 4 88534125 88534125 G A DSPP Missense_Mutation p.E263K 0.19 probably_damaging(0.943) TCGA-YG-AA3N-01 4 88766411 88766411 G A MEPE Missense_Mutation p.D131N 0.20 tolerated(0.29) benign(0.034) TCGA-YG-AA3N-01 4 90170226 90170226 C T GPRIN3 Missense_Mutation p.E346K 0.35 tolerated(0.08) possibly_damaging(0.616) TCGA-YG-AA3N-01 4 91229625 91229625 C T CCSER1 Missense_Mutation p.R64C 0.35 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 4 95220771 95220771 C T HPGDS Missense_Mutation p.E154K 0.20 tolerated(0.1) possibly_damaging(0.685) TCGA-YG-AA3N-01 4 96761781 96761781 G A PDHA2 Silent p.G160G 0.35 TCGA-YG-AA3N-01 5 101606397 101606397 G A SLCO4C1 Missense_Mutation p.P245S 0.22 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 5 101834439 101834439 C T SLCO6A1 Missense_Mutation p.G37E 0.34 tolerated(1) benign(0) TCGA-YG-AA3N-01 5 108171410 108171410 T C FER Missense_Mutation p.V128A 0.46 tolerated(0.1) possibly_damaging(0.64) TCGA-YG-AA3N-01 5 110819877 110819877 C T CAMK4 Nonsense_Mutation p.Q379* 0.34 TCGA-YG-AA3N-01 5 111540131 111540131 C T EPB41L4A Silent p.T439T 0.27 TCGA-YG-AA3N-01 5 115327912 115327912 G A AQPEP Missense_Mutation p.D400N 0.30 tolerated(0.12) possibly_damaging(0.9) TCGA-YG-AA3N-01 5 121758766 121758766 G A SNCAIP Missense_Mutation p.D112N 0.21 deleterious(0.01) benign(0.253) TCGA-YG-AA3N-01 5 122359490 122359490 G A PPIC 3'UTR 0.23 TCGA-YG-AA3N-01 5 127474366 127474366 C T SLC12A2 Missense_Mutation p.P496S 0.23 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 5 127623021 127623021 C T FBN2 Missense_Mutation p.E2287K 0.30 deleterious(0.05) probably_damaging(0.93) TCGA-YG-AA3N-01 5 127681271 127681271 G A FBN2 Missense_Mutation p.R999C 0.32 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3N-01 5 127727720 127727720 C T FBN2 Missense_Mutation p.D532N 0.23 tolerated(0.1) benign(0.25) TCGA-YG-AA3N-01 5 127782261 127782261 C T FBN2 Missense_Mutation p.G289R 0.25 deleterious(0.01) possibly_damaging(0.685) TCGA-YG-AA3N-01 5 128351643 128351643 G A SLC27A6 Nonsense_Mutation p.W345* 0.22 TCGA-YG-AA3N-01 5 128862081 128862081 G A ADAMTS19 Missense_Mutation p.D334N 0.32 deleterious(0) probably_damaging(0.954) TCGA-YG-AA3N-01 5 128864297 128864297 G A ADAMTS19 Missense_Mutation p.D413N 0.23 tolerated(0.29) possibly_damaging(0.665) TCGA-YG-AA3N-01 5 131598380 131598380 G A PDLIM4 Missense_Mutation p.E58K 0.33 deleterious(0.02) probably_damaging(0.967) TCGA-YG-AA3N-01 5 132085103 132085103 G A CCNI2 Missense_Mutation p.E208K 0.32 deleterious(0.02) probably_damaging(0.951) TCGA-YG-AA3N-01 5 134246052 134246052 G T PCBD2 Nonsense_Mutation p.E38* 0.26 TCGA-YG-AA3N-01 5 134785044 134785044 C T TIFAB 3'UTR 0.31 TCGA-YG-AA3N-01 5 135692686 135692686 G A TRPC7 Silent p.A130A 0.39 TCGA-YG-AA3N-01 5 136315018 136315018 C T SPOCK1 Intron 0.16 TCGA-YG-AA3N-01 5 13692194 13692194 G A DNAH5 Nonsense_Mutation p.R4592* 0.29 TCGA-YG-AA3N-01 5 13700796 13700796 A G DNAH5 Missense_Mutation p.V4559A 0.27 benign(0.418) TCGA-YG-AA3N-01 5 13719074 13719074 G A DNAH5 Missense_Mutation p.P4139L 0.11 possibly_damaging(0.908) TCGA-YG-AA3N-01 5 137219277 137219277 C A MYOT Missense_Mutation p.L341I 0.32 tolerated(1) benign(0.005) TCGA-YG-AA3N-01 5 13735347 13735347 C T DNAH5 Missense_Mutation p.R3885Q 0.29 benign(0.238) TCGA-YG-AA3N-01 5 13753599 13753599 G A DNAH5 Missense_Mutation p.R3539C 0.32 possibly_damaging(0.898) TCGA-YG-AA3N-01 5 137721997 137721997 T C KDM3B Missense_Mutation p.F356S 0.31 tolerated(0.3) probably_damaging(0.986) TCGA-YG-AA3N-01 5 13901398 13901398 T G DNAH5 Missense_Mutation p.E672A 0.33 possibly_damaging(0.621) TCGA-YG-AA3N-01 5 13911575 13911575 C T DNAH5 Missense_Mutation p.E522K 0.38 possibly_damaging(0.621) TCGA-YG-AA3N-01 5 139245143 139245143 G A NRG2 Missense_Mutation p.P394S 0.24 tolerated(0.13) probably_damaging(0.968) TCGA-YG-AA3N-01 5 140175465 140175465 G A PCDHA2 Missense_Mutation p.G306R 0.32 deleterious_low_confidence(0.04) benign(0.106) TCGA-YG-AA3N-01 5 140175466 140175466 G A PCDHA2 Missense_Mutation p.G306E 0.65 deleterious_low_confidence(0.01) benign(0.106) TCGA-YG-AA3N-01 5 140181294 140181294 G A PCDHA3 Missense_Mutation p.S171N 0.32 deleterious_low_confidence(0.04) benign(0.027) TCGA-YG-AA3N-01 5 140186720 140186720 C T PCDHA4 5'Flank 0.34 TCGA-YG-AA3N-01 5 140215883 140215883 G A PCDHA7 Missense_Mutation p.E639K 0.30 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-YG-AA3N-01 5 140230043 140230043 G A PCDHA9 Missense_Mutation p.G655R 0.31 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-YG-AA3N-01 5 140230326 140230326 C T PCDHA9 Missense_Mutation p.S749L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.79) TCGA-YG-AA3N-01 5 140249295 140249295 G A PCDHA11 Missense_Mutation p.E203K 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3N-01 5 140249988 140249988 C T PCDHA11 Silent p.L434L 0.41 TCGA-YG-AA3N-01 5 140262626 140262626 G A PCDHA13 Missense_Mutation p.G258E 0.28 tolerated_low_confidence(0.08) benign(0.109) TCGA-YG-AA3N-01 5 140308991 140308991 C T PCDHAC1 Intron 0.39 TCGA-YG-AA3N-01 5 140347885 140347885 G A PCDHAC2 Missense_Mutation p.E512K 0.38 tolerated(0.42) benign(0.014) TCGA-YG-AA3N-01 5 140348599 140348599 G A PCDHAC2 Missense_Mutation p.E750K 0.38 tolerated(0.67) benign(0.022) TCGA-YG-AA3N-01 5 140348797 140348797 G A PCDHAC2 Missense_Mutation p.G816R 0.11 tolerated(0.06) possibly_damaging(0.809) TCGA-YG-AA3N-01 5 140389490 140389490 G A PCDHAC1 Missense_Mutation p.G954R 0.27 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 5 140389723 140389723 C T PCDHAC1 3'UTR 0.31 TCGA-YG-AA3N-01 5 140433321 140433321 G A PCDHB1 Missense_Mutation p.E756K 0.26 deleterious(0.01) benign(0.171) TCGA-YG-AA3N-01 5 140557822 140557822 C T PCDHB8 Silent p.S69S 0.09 TCGA-YG-AA3N-01 5 140558075 140558075 C T PCDHB8 Missense_Mutation p.P154S 0.15 tolerated_low_confidence(0.14) benign(0.035) TCGA-YG-AA3N-01 5 140574400 140574400 G A PCDHB10 Missense_Mutation p.G759R 0.32 deleterious_low_confidence(0.03) benign(0.27) TCGA-YG-AA3N-01 5 140719074 140719074 C T PCDHGA2 Missense_Mutation p.S179F 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-YG-AA3N-01 5 140741694 140741694 C T PCDHGB2 Silent p.F664F 0.31 TCGA-YG-AA3N-01 5 140751630 140751630 G A PCDHGB3 Missense_Mutation p.D557N 0.23 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 5 140763331 140763331 C T PCDHGA7 Missense_Mutation p.P289S 0.32 tolerated_low_confidence(1) benign(0) TCGA-YG-AA3N-01 5 140768463 140768463 G A PCDHGB4 Missense_Mutation p.E338K 0.37 tolerated(0.09) benign(0.082) TCGA-YG-AA3N-01 5 140768860 140768860 C T PCDHGB4 Missense_Mutation p.S470L 0.28 tolerated(0.66) benign(0.027) TCGA-YG-AA3N-01 5 140772786 140772786 G A PCDHGA8 Missense_Mutation p.E136K 0.41 deleterious_low_confidence(0.05) benign(0.018) TCGA-YG-AA3N-01 5 140772877 140772877 C T PCDHGA8 Missense_Mutation p.S166F 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YG-AA3N-01 5 140774775 140774775 G A PCDHGA8 Missense_Mutation p.E799K 0.37 tolerated_low_confidence(0.19) benign(0.006) TCGA-YG-AA3N-01 5 140788612 140788612 C T PCDHGB6 Silent p.F281F 0.32 TCGA-YG-AA3N-01 5 140801882 140801882 C T PCDHGA11 Missense_Mutation p.P363L 0.36 tolerated_low_confidence(0.08) benign(0.064) TCGA-YG-AA3N-01 5 140810959 140810959 C T PCDHGA12 Silent p.V211V 0.28 TCGA-YG-AA3N-01 5 141511385 141511385 G A NDFIP1 Missense_Mutation p.E26K 0.23 deleterious(0.03) possibly_damaging(0.505) TCGA-YG-AA3N-01 5 142779366 142779366 G A NR3C1 Nonsense_Mutation p.Q347* 0.08 TCGA-YG-AA3N-01 5 146798113 146798113 G A DPYSL3 Silent p.I184I 0.32 TCGA-YG-AA3N-01 5 147516546 147516546 G A SPINK5 Missense_Mutation p.D1093N 0.27 deleterious_low_confidence(0.03) benign(0.009) TCGA-YG-AA3N-01 5 147653910 147653910 G A SPINK13 Missense_Mutation p.G24E 0.35 tolerated(1) benign(0.004) TCGA-YG-AA3N-01 5 148521522 148521522 G A ABLIM3 5'UTR 0.33 TCGA-YG-AA3N-01 5 149263075 149263075 G A PDE6A Silent p.I684I 0.26 TCGA-YG-AA3N-01 5 149301218 149301218 G A PDE6A Missense_Mutation p.P305S 0.29 tolerated(0.12) benign(0.033) TCGA-YG-AA3N-01 5 149449817 149449817 G A CSF1R Missense_Mutation p.T416I 0.17 tolerated(0.25) benign(0.062) TCGA-YG-AA3N-01 5 149748370 149748370 C T TCOF1 Missense_Mutation p.P157L 0.31 deleterious(0.01) benign(0.387) TCGA-YG-AA3N-01 5 150075238 150075238 G A RBM22 Silent p.P192P 0.24 TCGA-YG-AA3N-01 5 153855311 153855311 C T HAND1 3'UTR 0.33 TCGA-YG-AA3N-01 5 154287276 154287276 G A GEMIN5 Missense_Mutation p.S757L 0.30 tolerated(0.32) benign(0.001) TCGA-YG-AA3N-01 5 154393935 154393935 G A KIF4B Silent p.K172K 0.26 TCGA-YG-AA3N-01 5 154394185 154394185 C T KIF4B Missense_Mutation p.R256C 0.33 deleterious(0.01) possibly_damaging(0.568) TCGA-YG-AA3N-01 5 154395309 154395309 G A KIF4B Silent p.E630E 0.33 TCGA-YG-AA3N-01 5 156479438 156479438 G A HAVCR1 Missense_Mutation p.P203S 0.26 tolerated(0.23) unknown(0) TCGA-YG-AA3N-01 5 156479463 156479463 C T HAVCR1 Silent p.T194T 0.28 TCGA-YG-AA3N-01 5 156514221 156514221 G A HAVCR2 Silent p.T266T 0.36 TCGA-YG-AA3N-01 5 156514283 156514283 G A HAVCR2 Missense_Mutation p.P246S 0.30 tolerated(0.16) benign(0.032) TCGA-YG-AA3N-01 5 156590548 156590548 C T FAM71B Missense_Mutation p.G243E 0.35 tolerated(0.24) benign(0.073) TCGA-YG-AA3N-01 5 156593039 156593039 G A FAM71B Silent p.F47F 0.19 TCGA-YG-AA3N-01 5 156667082 156667082 C T ITK Missense_Mutation p.P288S 0.29 tolerated(0.82) benign(0.101) TCGA-YG-AA3N-01 5 156964930 156964930 C T ADAM19 Silent p.R107R 0.29 TCGA-YG-AA3N-01 5 156964931 156964931 C T ADAM19 Missense_Mutation p.R107Q 0.28 tolerated(0.29) benign(0.217) TCGA-YG-AA3N-01 5 15936638 15936638 C T FBXL7 Silent p.S273S 0.17 TCGA-YG-AA3N-01 5 159398889 159398889 C T ADRA1B Missense_Mutation p.S318F 0.17 deleterious(0) possibly_damaging(0.9) TCGA-YG-AA3N-01 5 159680569 159680569 C T CCNJL Missense_Mutation p.G375D 0.30 tolerated(0.54) benign(0.009) TCGA-YG-AA3N-01 5 160115096 160115096 G A ATP10B 5'UTR 0.28 TCGA-YG-AA3N-01 5 16067851 16067851 C T MARCH11 Missense_Mutation p.R313Q 0.21 tolerated(0.63) benign(0.089) TCGA-YG-AA3N-01 5 160973337 160973337 C T GABRB2 Missense_Mutation p.D54N 0.23 tolerated(0.65) benign(0.206) TCGA-YG-AA3N-01 5 167419958 167419958 C T TENM2 Silent p.L319L 0.29 TCGA-YG-AA3N-01 5 167622193 167622193 C T TENM2 Silent p.L931L 0.21 TCGA-YG-AA3N-01 5 167674899 167674899 C T TENM2 Silent p.L2319L 0.19 TCGA-YG-AA3N-01 5 16781920 16781920 G A MYO10 Silent p.F207F 0.34 TCGA-YG-AA3N-01 5 168189576 168189576 G A SLIT3 Silent p.I526I 0.22 TCGA-YG-AA3N-01 5 169127112 169127112 G A DOCK2 Silent p.R409R 0.35 TCGA-YG-AA3N-01 5 169533104 169533104 C T FOXI1 Missense_Mutation p.S48F 0.50 deleterious(0) possibly_damaging(0.553) TCGA-YG-AA3N-01 5 176306935 176306935 C T UNC5A 3'UTR 0.50 TCGA-YG-AA3N-01 5 176522656 176522656 T A FGFR4 Missense_Mutation p.S585T 0.27 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 5 176885144 176885144 G A DBN1 Missense_Mutation p.S566L 0.29 tolerated(0.66) benign(0.087) TCGA-YG-AA3N-01 5 177059601 177059601 G A RP11-1277A3.2 Intron 0.19 TCGA-YG-AA3N-01 5 177421270 177421270 C T PROP1 Missense_Mutation p.G60E 0.28 deleterious(0.03) benign(0.335) TCGA-YG-AA3N-01 5 177474217 177474217 C T FAM153C Intron 0.32 TCGA-YG-AA3N-01 5 178140566 178140566 G A ZNF354A Nonsense_Mutation p.Q105* 0.35 TCGA-YG-AA3N-01 5 180472518 180472518 C T BTNL9 Missense_Mutation p.S10F 0.29 tolerated_low_confidence(0.06) benign(0.003) TCGA-YG-AA3N-01 5 180475041 180475041 T C BTNL9 Missense_Mutation p.F75S 0.43 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 5 180475042 180475042 C T BTNL9 Silent p.F75F 0.45 TCGA-YG-AA3N-01 5 180475043 180475043 C T BTNL9 Missense_Mutation p.R76W 0.45 deleterious(0.01) benign(0.089) TCGA-YG-AA3N-01 5 19520855 19520855 C T CDH18 Missense_Mutation p.G475S 0.26 tolerated(0.41) benign(0.006) TCGA-YG-AA3N-01 5 21975459 21975459 C T CDH12 Silent p.V89V 0.25 TCGA-YG-AA3N-01 5 231076 231076 C T SDHA Missense_Mutation p.P286S 0.21 deleterious_low_confidence(0.01) benign(0.386) TCGA-YG-AA3N-01 5 23521244 23521244 C T PRDM9 Missense_Mutation p.S155F 0.32 deleterious_low_confidence(0) benign(0.012) TCGA-YG-AA3N-01 5 31313514 31313514 G A CDH6 Missense_Mutation p.R448Q 0.27 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 5 32789436 32789436 C T NPR3 3'UTR 0.36 TCGA-YG-AA3N-01 5 32789530 32789530 C T AC026703.1 Missense_Mutation p.S8L 0.25 possibly_damaging(0.504) TCGA-YG-AA3N-01 5 35014136 35014136 C T AGXT2 Missense_Mutation p.G351E 0.45 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 5 35753848 35753848 C T SPEF2 Silent p.F1151F 0.21 TCGA-YG-AA3N-01 5 35776376 35776376 C T SPEF2 Nonsense_Mutation p.R1366* 0.33 TCGA-YG-AA3N-01 5 35875648 35875648 C T IL7R Missense_Mutation p.H279Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 5 35876541 35876541 C T IL7R Nonsense_Mutation p.Q445* 0.35 TCGA-YG-AA3N-01 5 35910488 35910488 C T CAPSL Missense_Mutation p.E99K 0.36 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 5 35910531 35910531 G A CAPSL Silent p.F84F 0.32 TCGA-YG-AA3N-01 5 35910605 35910605 C T CAPSL Missense_Mutation p.D60N 0.16 tolerated(0.5) benign(0.01) TCGA-YG-AA3N-01 5 36039583 36039583 G A UGT3A2 Silent p.L357L 0.35 TCGA-YG-AA3N-01 5 37392170 37392170 C T WDR70 Missense_Mutation p.P82S 0.23 tolerated(0.29) benign(0.003) TCGA-YG-AA3N-01 5 40843500 40843500 C T CARD6 Missense_Mutation p.S177L 0.30 tolerated(0.13) benign(0) TCGA-YG-AA3N-01 5 40945466 40945466 G A C7 Missense_Mutation p.G245E 0.37 tolerated(0.75) benign(0.001) TCGA-YG-AA3N-01 5 41039627 41039627 C T MROH2B Missense_Mutation p.E662K 0.20 tolerated(1) benign(0.002) TCGA-YG-AA3N-01 5 41201694 41201694 G A C6 Missense_Mutation p.P89L 0.35 deleterious(0.04) possibly_damaging(0.828) TCGA-YG-AA3N-01 5 41382454 41382454 C T PLCXD3 Missense_Mutation p.D96N 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 5 52233309 52233309 C T ITGA1 Missense_Mutation p.P1015S 0.20 tolerated(0.09) benign(0.217) TCGA-YG-AA3N-01 5 54420789 54420789 G A CDC20B Missense_Mutation p.R353C 0.28 tolerated(0.25) benign(0.011) TCGA-YG-AA3N-01 5 5462134 5462134 C T KIAA0947 Missense_Mutation p.T896I 0.25 tolerated(0.16) benign(0.01) TCGA-YG-AA3N-01 5 54948412 54948412 G A SLC38A9 Silent p.L299L 0.33 TCGA-YG-AA3N-01 5 58270854 58270854 G A PDE4D Silent p.L689L 0.19 TCGA-YG-AA3N-01 5 63256531 63256531 C T HTR1A Missense_Mutation p.R339Q 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-YG-AA3N-01 5 64020067 64020067 G A SREK1IP1 3'UTR 0.44 TCGA-YG-AA3N-01 5 64020068 64020068 G A SREK1IP1 3'UTR 0.45 TCGA-YG-AA3N-01 5 64748590 64748590 C T ADAMTS6 Missense_Mutation p.V263M 0.34 tolerated(0.09) possibly_damaging(0.758) TCGA-YG-AA3N-01 5 64748591 64748591 C T ADAMTS6 Missense_Mutation p.M262I 0.33 deleterious(0) probably_damaging(0.943) TCGA-YG-AA3N-01 5 64920825 64920825 C T CTC-534A2.2 5'UTR 0.41 TCGA-YG-AA3N-01 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.41 TCGA-YG-AA3N-01 5 65322146 65322146 A T ERBB2IP Missense_Mutation p.N346I 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-YG-AA3N-01 5 66396331 66396331 C T MAST4 Silent p.F327F 0.31 TCGA-YG-AA3N-01 5 68665385 68665385 G A TAF9 Intron 0.42 TCGA-YG-AA3N-01 5 71493779 71493779 C T MAP1B Missense_Mutation p.P1533S 0.31 probably_damaging(0.998) TCGA-YG-AA3N-01 5 72469103 72469103 C T TMEM174 Silent p.F11F 0.26 TCGA-YG-AA3N-01 5 74130379 74130379 C T FAM169A Missense_Mutation p.R121Q 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-YG-AA3N-01 5 7743801 7743801 C T ADCY2 Missense_Mutation p.S631F 0.30 deleterious(0) possibly_damaging(0.818) TCGA-YG-AA3N-01 5 77656544 77656544 C T SCAMP1 Missense_Mutation p.P17S 0.33 deleterious(0) possibly_damaging(0.732) TCGA-YG-AA3N-01 5 77656545 77656545 C T SCAMP1 Missense_Mutation p.P17L 0.33 deleterious(0) benign(0.081) TCGA-YG-AA3N-01 5 78329173 78329173 C T DMGDH Missense_Mutation p.G418R 0.24 deleterious(0) benign(0.197) TCGA-YG-AA3N-01 5 79026439 79026439 C T CMYA5 Silent p.P617P 0.31 TCGA-YG-AA3N-01 5 79028553 79028553 G A CMYA5 Missense_Mutation p.G1322E 0.30 possibly_damaging(0.617) TCGA-YG-AA3N-01 5 79616671 79616671 C T SPZ1 Missense_Mutation p.R213C 0.50 tolerated(0.12) benign(0) TCGA-YG-AA3N-01 5 80643675 80643675 G A ACOT12 Missense_Mutation p.P191S 0.35 deleterious(0) possibly_damaging(0.901) TCGA-YG-AA3N-01 5 82817900 82817900 C T VCAN Missense_Mutation p.P1259S 0.37 tolerated(0.6) benign(0.168) TCGA-YG-AA3N-01 5 82940249 82940249 C T HAPLN1 Silent p.R236R 0.43 TCGA-YG-AA3N-01 5 82948473 82948473 C T HAPLN1 Missense_Mutation p.E91K 0.24 tolerated(0.07) probably_damaging(0.989) TCGA-YG-AA3N-01 5 89949435 89949435 G A GPR98 Silent p.R1348R 0.53 TCGA-YG-AA3N-01 5 89968483 89968483 G A GPR98 Missense_Mutation p.D1625N 0.16 probably_damaging(0.989) TCGA-YG-AA3N-01 5 90041415 90041415 G A GPR98 Missense_Mutation p.E3593K 0.43 probably_damaging(0.973) TCGA-YG-AA3N-01 5 90086755 90086755 C T GPR98 Silent p.F4703F 0.24 TCGA-YG-AA3N-01 5 90124841 90124841 C T GPR98 Silent p.F5483F 0.34 TCGA-YG-AA3N-01 5 93077230 93077230 G A POU5F2 Missense_Mutation p.P14S 0.39 tolerated(0.11) benign(0.005) TCGA-YG-AA3N-01 5 95730707 95730707 C T PCSK1 Missense_Mutation p.G582E 0.24 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3N-01 6 100369011 100369011 C T MCHR2 Silent p.Q276Q 0.35 TCGA-YG-AA3N-01 6 100838252 100838252 T C SIM1 Missense_Mutation p.I762M 0.30 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-YG-AA3N-01 6 102337658 102337658 G A GRIK2 Silent p.L556L 0.29 TCGA-YG-AA3N-01 6 102376420 102376420 C T GRIK2 Silent p.S666S 0.17 TCGA-YG-AA3N-01 6 107391296 107391296 G A BEND3 Missense_Mutation p.H367Y 0.39 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-YG-AA3N-01 6 107420469 107420469 G A BEND3 Silent p.T7T 0.21 TCGA-YG-AA3N-01 6 107420470 107420470 G A BEND3 Missense_Mutation p.T7I 0.21 tolerated_low_confidence(0.15) benign(0.009) TCGA-YG-AA3N-01 6 108489336 108489336 C T NR2E1 Intron 0.45 TCGA-YG-AA3N-01 6 10874994 10874994 C T GCM2 Missense_Mutation p.G252E 0.17 tolerated(0.38) benign(0.015) TCGA-YG-AA3N-01 6 110300726 110300726 G A GPR6 Silent p.S137S 0.31 TCGA-YG-AA3N-01 6 112508745 112508745 G A LAMA4 Silent p.I291I 0.17 TCGA-YG-AA3N-01 6 114378937 114378937 G A HS3ST5 Silent p.S175S 0.30 TCGA-YG-AA3N-01 6 116441870 116441870 C T COL10A1 Missense_Mutation p.G470E 0.23 deleterious(0) unknown(0) TCGA-YG-AA3N-01 6 116784547 116784547 C T FAM26F Silent p.F209F 0.24 TCGA-YG-AA3N-01 6 117114042 117114042 G A GPRC6A Silent p.L682L 0.35 TCGA-YG-AA3N-01 6 117631272 117631272 C T ROS1 Missense_Mutation p.G2136R 0.30 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 6 117725550 117725550 C T ROS1 Missense_Mutation p.G111R 0.41 deleterious(0.02) possibly_damaging(0.489) TCGA-YG-AA3N-01 6 119522457 119522457 G A MAN1A1 Missense_Mutation p.P391L 0.31 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3N-01 6 122733535 122733535 G A HSF2 Silent p.L37L 0.45 TCGA-YG-AA3N-01 6 123384967 123384967 G A CLVS2 3'UTR 0.27 TCGA-YG-AA3N-01 6 125584041 125584041 C T TPD52L1 Missense_Mutation p.A183V 0.33 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 6 125584042 125584042 C T TPD52L1 Silent p.A183A 0.33 TCGA-YG-AA3N-01 6 128151059 128151059 C T THEMIS Missense_Mutation p.D91N 0.32 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3N-01 6 128330341 128330341 C T PTPRK Missense_Mutation p.G756E 0.27 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 6 128403756 128403756 C T PTPRK Missense_Mutation p.D535N 0.26 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 6 130762527 130762527 G A TMEM200A Silent p.R320R 0.14 TCGA-YG-AA3N-01 6 131211548 131211548 G A EPB41L2 Missense_Mutation p.R516C 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3N-01 6 133014179 133014179 G A VNN1 Silent p.P270P 0.26 TCGA-YG-AA3N-01 6 13644892 13644892 G A RANBP9 Missense_Mutation p.P333S 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 6 138628454 138628454 C T KIAA1244 Missense_Mutation p.P1298L 0.36 deleterious(0.01) benign(0.079) TCGA-YG-AA3N-01 6 138628455 138628455 C T KIAA1244 Silent p.P1298P 0.35 TCGA-YG-AA3N-01 6 143095019 143095019 G A HIVEP2 Missense_Mutation p.S286F 0.19 deleterious(0.01) possibly_damaging(0.616) TCGA-YG-AA3N-01 6 146625893 146625893 C T GRM1 Missense_Mutation p.P366L 0.21 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 6 150005673 150005673 G A LATS1 Silent p.S184S 0.11 TCGA-YG-AA3N-01 6 151130349 151130349 C T PLEKHG1 Missense_Mutation p.L341F 0.36 tolerated(0.12) benign(0.067) TCGA-YG-AA3N-01 6 152457912 152457912 G A SYNE1 Silent p.L8500L 0.27 TCGA-YG-AA3N-01 6 152774676 152774676 C T SYNE1 Intron 0.28 TCGA-YG-AA3N-01 6 152804348 152804348 G A SYNE1 Missense_Mutation p.P408S 0.21 probably_damaging(0.983) TCGA-YG-AA3N-01 6 152826491 152826491 C T SYNE1 Missense_Mutation p.R208K 0.26 probably_damaging(0.957) TCGA-YG-AA3N-01 6 158502221 158502221 C T SYNJ2 Missense_Mutation p.S883F 0.23 deleterious(0) probably_damaging(0.979) TCGA-YG-AA3N-01 6 158510887 158510887 G A SYNJ2 Missense_Mutation p.G1158E 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3N-01 6 159192395 159192395 G A EZR Silent p.I280I 0.27 TCGA-YG-AA3N-01 6 159653636 159653636 C T FNDC1 Missense_Mutation p.R698W 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-YG-AA3N-01 6 160169232 160169232 C T WTAP Nonsense_Mutation p.Q95* 0.25 TCGA-YG-AA3N-01 6 160461613 160461613 C T IGF2R Missense_Mutation p.P446L 0.29 deleterious(0.04) probably_damaging(1) TCGA-YG-AA3N-01 6 160905238 160905238 C T LPAL2 RNA 0.33 TCGA-YG-AA3N-01 6 160968873 160968873 C T LPA Missense_Mutation p.R1751K 0.25 tolerated(0.35) benign(0.164) TCGA-YG-AA3N-01 6 161139379 161139379 G A PLG Missense_Mutation p.E281K 0.33 tolerated(0.14) benign(0.018) TCGA-YG-AA3N-01 6 161552029 161552029 G T AGPAT4 3'UTR 0.41 TCGA-YG-AA3N-01 6 163483346 163483346 G A PACRG Silent p.P152P 0.15 TCGA-YG-AA3N-01 6 166575972 166575972 G A T Silent p.P289P 0.38 TCGA-YG-AA3N-01 6 167595301 167595301 G A TCP10L2 Missense_Mutation p.R320Q 0.36 tolerated(0.82) benign(0.002) TCGA-YG-AA3N-01 6 167595337 167595337 C T TCP10L2 Missense_Mutation p.S332F 0.46 tolerated(0.08) benign(0.007) TCGA-YG-AA3N-01 6 168479792 168479792 C T FRMD1 5'UTR 0.31 TCGA-YG-AA3N-01 6 17831379 17831379 G A KIF13A Silent p.L452L 0.21 TCGA-YG-AA3N-01 6 18225819 18225819 G A DEK 3'UTR 0.25 TCGA-YG-AA3N-01 6 24533863 24533863 G A ALDH5A1 Missense_Mutation p.G524S 0.09 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 6 24533864 24533864 G A ALDH5A1 Missense_Mutation p.G524D 0.09 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 6 24547266 24547266 G A KIAA0319 3'UTR 0.22 TCGA-YG-AA3N-01 6 25727142 25727142 G C HIST1H2BA Silent p.P2P 0.29 TCGA-YG-AA3N-01 6 25926022 25926022 C T SLC17A2 Translation_Start_Site p.M1? 0.18 deleterious(0.05) benign(0.051) TCGA-YG-AA3N-01 6 26092840 26092840 G A HFE Intron 0.14 TCGA-YG-AA3N-01 6 26123935 26123935 G A HIST1H2BC Silent p.F66F 0.26 TCGA-YG-AA3N-01 6 2685534 2685534 C T MYLK4 Missense_Mutation p.E181K 0.17 deleterious(0.01) possibly_damaging(0.799) TCGA-YG-AA3N-01 6 27419374 27419374 G A ZNF184 Missense_Mutation p.S655F 0.19 deleterious(0.03) probably_damaging(0.94) TCGA-YG-AA3N-01 6 27799003 27799003 G A HIST1H4K Silent p.F101F 0.25 TCGA-YG-AA3N-01 6 27925866 27925866 C T OR2B6 Missense_Mutation p.P283L 0.12 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3N-01 6 28056913 28056913 A T ZNF165 Missense_Mutation p.N375Y 0.22 deleterious(0.01) possibly_damaging(0.58) TCGA-YG-AA3N-01 6 28056914 28056914 A G ZNF165 Missense_Mutation p.N375S 0.22 tolerated(0.2) benign(0.008) TCGA-YG-AA3N-01 6 28268830 28268830 C T PGBD1 Missense_Mutation p.P400L 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-YG-AA3N-01 6 28501806 28501806 C T GPX5 Silent p.V176V 0.19 TCGA-YG-AA3N-01 6 28540086 28540086 G A SCAND3 Missense_Mutation p.P1194S 0.22 tolerated_low_confidence(0.07) benign(0.081) TCGA-YG-AA3N-01 6 28542993 28542993 C T SCAND3 Missense_Mutation p.E497K 0.31 tolerated_low_confidence(0.12) benign(0.07) TCGA-YG-AA3N-01 6 29054687 29054687 G A OR2B3 Silent p.L113L 0.15 TCGA-YG-AA3N-01 6 29231793 29231793 C T XXbac-BPG308J9.3 RNA 0.47 TCGA-YG-AA3N-01 6 29430126 29430126 G A OR2H1 Missense_Mutation p.E194K 0.30 deleterious(0.02) possibly_damaging(0.768) TCGA-YG-AA3N-01 6 29523823 29523823 G A UBD Missense_Mutation p.S111L 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-YG-AA3N-01 6 29797370 29797370 C T HLA-G Silent p.F265F 0.25 TCGA-YG-AA3N-01 6 30553755 30553755 C T ABCF1 Missense_Mutation p.S567F 0.29 deleterious(0) probably_damaging(0.954) TCGA-YG-AA3N-01 6 31105808 31105808 G A PSORS1C2 Missense_Mutation p.P111S 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YG-AA3N-01 6 31637631 31637631 C T CSNK2B Silent p.I192I 0.19 TCGA-YG-AA3N-01 6 31686823 31686823 G A LY6G6C 3'UTR 0.19 TCGA-YG-AA3N-01 6 31696809 31696809 C T DDAH2 Missense_Mutation p.E44K 0.09 deleterious(0.01) benign(0.347) TCGA-YG-AA3N-01 6 31733448 31733448 C T VWA7 Missense_Mutation p.A867T 0.33 tolerated(0.1) benign(0.075) TCGA-YG-AA3N-01 6 31734482 31734482 C T VWA7 Missense_Mutation p.D648N 0.28 tolerated(0.31) benign(0.011) TCGA-YG-AA3N-01 6 31736932 31736932 G A VWA7 Missense_Mutation p.R456W 0.12 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 6 31765775 31765775 G A LSM2 Missense_Mutation p.P52S 0.23 deleterious(0) probably_damaging(0.969) TCGA-YG-AA3N-01 6 31842262 31842262 G A SLC44A4 Silent p.P168P 0.31 TCGA-YG-AA3N-01 6 31842263 31842263 G A SLC44A4 Missense_Mutation p.P168L 0.30 deleterious(0) probably_damaging(0.988) TCGA-YG-AA3N-01 6 31895523 31895523 G A CFB 5'UTR 0.24 TCGA-YG-AA3N-01 6 31912780 31912780 C T C2 Missense_Mutation p.L685F 0.26 tolerated(0.1) benign(0.138) TCGA-YG-AA3N-01 6 31929390 31929390 C T SKIV2L Missense_Mutation p.P286S 0.22 tolerated(0.3) benign(0.328) TCGA-YG-AA3N-01 6 31964244 31964244 G A C4A Silent p.E1181E 0.13 TCGA-YG-AA3N-01 6 31996982 31996982 G A C4B Silent p.E1181E 0.26 TCGA-YG-AA3N-01 6 32017219 32017219 G A TNXB 5'Flank 0.28 TCGA-YG-AA3N-01 6 32025946 32025946 C T TNXB Missense_Mutation p.E2572K 0.10 probably_damaging(0.986) TCGA-YG-AA3N-01 6 32036175 32036175 C T TNXB Missense_Mutation p.G2071E 0.28 probably_damaging(0.999) TCGA-YG-AA3N-01 6 32036176 32036176 C T TNXB Missense_Mutation p.G2071R 0.28 probably_damaging(1) TCGA-YG-AA3N-01 6 32036415 32036415 C T TNXB Missense_Mutation p.G1991E 0.27 benign(0.046) TCGA-YG-AA3N-01 6 32049966 32049966 C T RNA5SP206 5'Flank 0.17 TCGA-YG-AA3N-01 6 32165268 32165268 C T NOTCH4 Silent p.L1620L 0.19 TCGA-YG-AA3N-01 6 32709214 32709214 G A HLA-DQA2 5'UTR 0.23 TCGA-YG-AA3N-01 6 33142328 33142328 G A COL11A2 Silent p.G716G 0.24 TCGA-YG-AA3N-01 6 33366062 33366062 C T KIFC1 Intron 0.20 TCGA-YG-AA3N-01 6 33632713 33632713 T C ITPR3 Silent p.I405I 0.28 TCGA-YG-AA3N-01 6 348787 348787 G A DUSP22 Missense_Mutation p.E152K 0.08 tolerated(0.11) benign(0.005) TCGA-YG-AA3N-01 6 35423815 35423815 C T FANCE Silent p.S180S 0.22 TCGA-YG-AA3N-01 6 35763531 35763531 C T CLPS Missense_Mutation p.E62K 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-YG-AA3N-01 6 35764998 35764998 C A CLPS Missense_Mutation p.G23V 0.22 deleterious(0) possibly_damaging(0.891) TCGA-YG-AA3N-01 6 36259140 36259140 G A PNPLA1 Silent p.K83K 0.23 TCGA-YG-AA3N-01 6 36454804 36454804 G A KCTD20 Missense_Mutation p.R371Q 0.21 tolerated(0.07) possibly_damaging(0.656) TCGA-YG-AA3N-01 6 37626190 37626190 C T MDGA1 Silent p.R71R 0.17 TCGA-YG-AA3N-01 6 37626191 37626191 C T MDGA1 Missense_Mutation p.R71Q 0.19 deleterious(0) possibly_damaging(0.752) TCGA-YG-AA3N-01 6 38793939 38793939 G A DNAH8 Missense_Mutation p.M1068I 0.35 benign(0.002) TCGA-YG-AA3N-01 6 38831820 38831820 G A DNAH8 Missense_Mutation p.G1944E 0.16 probably_damaging(1) TCGA-YG-AA3N-01 6 38885077 38885077 G A DNAH8 Missense_Mutation p.M3184I 0.17 probably_damaging(0.989) TCGA-YG-AA3N-01 6 38919263 38919263 C T DNAH8 Nonsense_Mutation p.Q3923* 0.24 TCGA-YG-AA3N-01 6 41011428 41011428 C T TSPO2 Silent p.N102N 0.19 TCGA-YG-AA3N-01 6 41126790 41126790 C T TREM2 Missense_Mutation p.G166E 0.16 tolerated(1) benign(0) TCGA-YG-AA3N-01 6 41160555 41160555 C T TREML2 Silent p.K290K 0.19 TCGA-YG-AA3N-01 6 41309650 41309650 C T NCR2 Silent p.T171T 0.37 TCGA-YG-AA3N-01 6 41318553 41318553 C T NCR2 Missense_Mutation p.T261I 0.19 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-YG-AA3N-01 6 41705498 41705498 G A PGC Silent p.F328F 0.12 TCGA-YG-AA3N-01 6 42236064 42236064 G A TRERF1 Missense_Mutation p.S422F 0.22 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-YG-AA3N-01 6 42236689 42236689 C T TRERF1 Missense_Mutation p.G214S 0.28 tolerated_low_confidence(0.26) benign(0.082) TCGA-YG-AA3N-01 6 42237398 42237398 G A TRERF1 5'UTR 0.27 TCGA-YG-AA3N-01 6 42650793 42650793 T C UBR2 Silent p.S1573S 0.15 TCGA-YG-AA3N-01 6 43222389 43222389 C T TTBK1 Silent p.P192P 0.26 TCGA-YG-AA3N-01 6 46793128 46793128 C T MEP1A Missense_Mutation p.P226S 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-YG-AA3N-01 6 46800897 46800897 G A MEP1A Missense_Mutation p.D411N 0.22 tolerated(0.52) benign(0.021) TCGA-YG-AA3N-01 6 46851988 46851988 C T GPR116 Missense_Mutation p.E117K 0.17 tolerated(0.21) benign(0.115) TCGA-YG-AA3N-01 6 47674990 47674990 G A GPR115 Missense_Mutation p.M3I 0.29 deleterious(0.01) probably_damaging(0.968) TCGA-YG-AA3N-01 6 49582423 49582423 C T RHAG Missense_Mutation p.E262K 0.42 tolerated(0.21) possibly_damaging(0.465) TCGA-YG-AA3N-01 6 49754034 49754034 C T PGK2 Silent p.G289G 0.21 TCGA-YG-AA3N-01 6 49936450 49936450 C T DEFB113 Silent p.A63A 0.20 TCGA-YG-AA3N-01 6 49976957 49976957 C T DEFB110 Missense_Mutation p.R28K 0.25 tolerated_low_confidence(0.4) benign(0.023) TCGA-YG-AA3N-01 6 50811126 50811126 G A TFAP2B 3'UTR 0.17 TCGA-YG-AA3N-01 6 52142360 52142360 G A MCM3 Missense_Mutation p.R381C 0.27 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 6 54173406 54173406 G A TINAG Missense_Mutation p.E20K 0.24 tolerated_low_confidence(0.25) benign(0.014) TCGA-YG-AA3N-01 6 54805238 54805238 C T FAM83B Missense_Mutation p.S490L 0.27 deleterious(0) possibly_damaging(0.798) TCGA-YG-AA3N-01 6 54806249 54806249 C T FAM83B Missense_Mutation p.S827F 0.13 deleterious(0.03) probably_damaging(0.99) TCGA-YG-AA3N-01 6 54806378 54806378 C T FAM83B Missense_Mutation p.P870L 0.21 tolerated(0.47) benign(0.002) TCGA-YG-AA3N-01 6 55113615 55113615 G A HCRTR2 Silent p.Q134Q 0.17 TCGA-YG-AA3N-01 6 55128527 55128527 C T HCRTR2 Silent p.Y223Y 0.22 TCGA-YG-AA3N-01 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.15 deleterious(0) probably_damaging(0.934) TCGA-YG-AA3N-01 6 55266614 55266614 G A GFRAL Missense_Mutation p.R383K 0.16 deleterious(0.01) possibly_damaging(0.591) TCGA-YG-AA3N-01 6 55924020 55924020 C T COL21A1 Missense_Mutation p.E877K 0.22 tolerated(0.87) benign(0.012) TCGA-YG-AA3N-01 6 56006596 56006596 C T COL21A1 Missense_Mutation p.R510Q 0.20 tolerated(0.51) benign(0.147) TCGA-YG-AA3N-01 6 57055263 57055263 G A RAB23 Missense_Mutation p.P237L 0.21 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-YG-AA3N-01 6 57190805 57190805 C T PRIM2 Nonsense_Mutation p.Q141* 0.27 TCGA-YG-AA3N-01 6 57512638 57512638 C T PRIM2 3'UTR 0.10 TCGA-YG-AA3N-01 6 69728355 69728355 G A BAI3 Missense_Mutation p.D691N 0.36 tolerated(0.12) possibly_damaging(0.666) TCGA-YG-AA3N-01 6 70034833 70034833 G A BAI3 Missense_Mutation p.E962K 0.32 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 6 70040395 70040395 C T BAI3 Intron 0.39 TCGA-YG-AA3N-01 6 70042871 70042871 C T BAI3 Silent p.I1053I 0.35 TCGA-YG-AA3N-01 6 70964887 70964887 C T COL9A1 Missense_Mutation p.G526E 0.31 probably_damaging(0.999) TCGA-YG-AA3N-01 6 71191733 71191733 C T FAM135A Silent p.F233F 0.29 TCGA-YG-AA3N-01 6 72947585 72947585 G A RIMS1 Silent p.K639K 0.19 TCGA-YG-AA3N-01 6 73919780 73919780 C T RP11-257K9.8 3'UTR 0.27 TCGA-YG-AA3N-01 6 7403054 7403054 C T RIOK1 Missense_Mutation p.R231C 0.26 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 6 7572086 7572086 G A DSP Missense_Mutation p.E639K 0.21 benign(0.038) TCGA-YG-AA3N-01 6 75799838 75799838 G A COL12A1 Missense_Mutation p.P2977S 0.24 benign(0.353) TCGA-YG-AA3N-01 6 75799839 75799839 G A COL12A1 Silent p.P2976P 0.23 TCGA-YG-AA3N-01 6 76023067 76023067 G A FILIP1 Silent p.S827S 0.27 TCGA-YG-AA3N-01 6 76024866 76024866 C T FILIP1 Missense_Mutation p.E228K 0.32 tolerated(0.12) possibly_damaging(0.844) TCGA-YG-AA3N-01 6 76660650 76660650 C T IMPG1 Missense_Mutation p.D485N 0.32 tolerated(0.06) possibly_damaging(0.642) TCGA-YG-AA3N-01 6 76712689 76712689 G A IMPG1 Missense_Mutation p.P413S 0.25 tolerated(0.14) benign(0.004) TCGA-YG-AA3N-01 6 8064535 8064535 G A BLOC1S5 Silent p.S25S 0.17 TCGA-YG-AA3N-01 6 83075412 83075412 C T TPBG Missense_Mutation p.S245L 0.47 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 6 83602719 83602719 G A UBE3D 3'UTR 0.31 TCGA-YG-AA3N-01 6 83602720 83602720 G A UBE3D 3'UTR 0.31 TCGA-YG-AA3N-01 6 84765070 84765070 C T MRAP2 Silent p.T11T 0.28 TCGA-YG-AA3N-01 6 84798839 84798839 G A MRAP2 Missense_Mutation p.R86K 0.28 tolerated(0.11) benign(0.269) TCGA-YG-AA3N-01 6 88854756 88854756 C T CNR1 Missense_Mutation p.E80K 0.19 deleterious_low_confidence(0.03) benign(0.021) TCGA-YG-AA3N-01 6 90438751 90438751 G A MDN1 Missense_Mutation p.L1750F 0.33 probably_damaging(1) TCGA-YG-AA3N-01 6 90604253 90604253 G A GJA10 Silent p.G22G 0.32 TCGA-YG-AA3N-01 7 100176360 100176360 G A LRCH4 Silent p.V216V 0.14 TCGA-YG-AA3N-01 7 100228562 100228562 G A TFR2 Missense_Mutation p.S407F 0.22 deleterious(0.01) possibly_damaging(0.606) TCGA-YG-AA3N-01 7 100229776 100229776 G A TFR2 Missense_Mutation p.P299S 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-YG-AA3N-01 7 100488870 100488870 G A ACHE Missense_Mutation p.P548L 0.28 deleterious(0.03) possibly_damaging(0.781) TCGA-YG-AA3N-01 7 100488871 100488871 G A ACHE Missense_Mutation p.P548S 0.25 tolerated(0.72) benign(0.034) TCGA-YG-AA3N-01 7 100549628 100549628 A G MUC3A Missense_Mutation p.H70R 0.15 tolerated(0.43) unknown(0) TCGA-YG-AA3N-01 7 100549629 100549629 C T MUC3A Silent p.H70H 0.15 TCGA-YG-AA3N-01 7 100551882 100551882 C T MUC3A Silent p.F211F 0.06 TCGA-YG-AA3N-01 7 100676149 100676149 C T MUC17 Silent p.T484T 0.15 TCGA-YG-AA3N-01 7 100678868 100678868 C T MUC17 Missense_Mutation p.P1391S 0.15 unknown(0) TCGA-YG-AA3N-01 7 100679850 100679850 G A MUC17 Missense_Mutation p.S1718N 0.54 benign(0.39) TCGA-YG-AA3N-01 7 100680753 100680753 C T MUC17 Missense_Mutation p.S2019F 0.20 probably_damaging(0.997) TCGA-YG-AA3N-01 7 100681847 100681847 G A MUC17 Missense_Mutation p.D2384N 0.13 unknown(0) TCGA-YG-AA3N-01 7 100685496 100685496 C T MUC17 Missense_Mutation p.S3600F 0.27 benign(0.134) TCGA-YG-AA3N-01 7 102004857 102004857 G A PRKRIP1 Intron 0.31 TCGA-YG-AA3N-01 7 103206818 103206818 C T RELN Missense_Mutation p.G1597R 0.14 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 103214583 103214583 C T RELN Silent p.G1489G 0.25 TCGA-YG-AA3N-01 7 105098305 105098305 G A PUS7 Nonsense_Mutation p.R640* 0.23 TCGA-YG-AA3N-01 7 105641949 105641949 G A CDHR3 Missense_Mutation p.G252E 0.23 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 107692693 107692693 G A LAMB4 Silent p.I1255I 0.12 TCGA-YG-AA3N-01 7 110763183 110763183 C T LRRN3 Missense_Mutation p.L119F 0.55 deleterious(0.03) probably_damaging(0.988) TCGA-YG-AA3N-01 7 111368526 111368526 G A DOCK4 Missense_Mutation p.P1902L 0.16 tolerated_low_confidence(0.14) possibly_damaging(0.557) TCGA-YG-AA3N-01 7 111368527 111368527 G A DOCK4 Missense_Mutation p.P1902S 0.18 tolerated_low_confidence(0.14) possibly_damaging(0.879) TCGA-YG-AA3N-01 7 111535738 111535738 G A DOCK4 Missense_Mutation p.S506F 0.18 deleterious(0) possibly_damaging(0.797) TCGA-YG-AA3N-01 7 113519079 113519079 C T PPP1R3A Missense_Mutation p.D690N 0.17 tolerated(0.11) benign(0.111) TCGA-YG-AA3N-01 7 113519244 113519244 C T PPP1R3A Missense_Mutation p.E635K 0.10 tolerated(0.21) benign(0.006) TCGA-YG-AA3N-01 7 11446623 11446623 G A THSD7A Missense_Mutation p.P1326S 0.19 deleterious(0.04) benign(0.41) TCGA-YG-AA3N-01 7 114619810 114619810 C T MDFIC Missense_Mutation p.S265F 0.18 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 7 116963034 116963034 G A WNT2 Missense_Mutation p.P4S 0.20 tolerated(0.27) unknown(0) TCGA-YG-AA3N-01 7 117232400 117232400 G A CFTR Missense_Mutation p.D727N 0.23 tolerated(0.33) benign(0.003) TCGA-YG-AA3N-01 7 117232512 117232512 G A CFTR Missense_Mutation p.R764Q 0.19 tolerated(0.75) benign(0.003) TCGA-YG-AA3N-01 7 120446664 120446664 C T TSPAN12 Missense_Mutation p.R184K 0.15 tolerated(0.48) benign(0.001) TCGA-YG-AA3N-01 7 120591176 120591176 C T ING3 Intron 0.21 TCGA-YG-AA3N-01 7 120780893 120780893 C T CPED1 Missense_Mutation p.P571L 0.15 tolerated(1) benign(0.001) TCGA-YG-AA3N-01 7 121766471 121766471 C T AASS Missense_Mutation p.G144R 0.16 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3N-01 7 122111485 122111485 G A CADPS2 Silent p.D710D 0.10 TCGA-YG-AA3N-01 7 122261654 122261654 C T CADPS2 Missense_Mutation p.G329S 0.20 tolerated(0.29) benign(0.387) TCGA-YG-AA3N-01 7 123593757 123593757 C T SPAM1 Missense_Mutation p.P45S 0.15 tolerated(0.24) benign(0.264) TCGA-YG-AA3N-01 7 126173045 126173045 G A GRM8 Silent p.F797F 0.20 TCGA-YG-AA3N-01 7 126883314 126883314 G A GRM8 5'UTR 0.19 TCGA-YG-AA3N-01 7 129663468 129663468 G A ZC3HC1 Silent p.T372T 0.05 TCGA-YG-AA3N-01 7 129946648 129946648 G A CPA4 Missense_Mutation p.D205N 0.21 deleterious(0.04) benign(0.323) TCGA-YG-AA3N-01 7 130080781 130080781 G A CEP41 Silent p.N9N 0.18 TCGA-YG-AA3N-01 7 131172434 131172434 C T MKLN1 Missense_Mutation p.P719S 0.18 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 7 131831307 131831307 C T PLXNA4 Missense_Mutation p.V1673M 0.19 deleterious(0) probably_damaging(0.973) TCGA-YG-AA3N-01 7 131864663 131864663 C T PLXNA4 Missense_Mutation p.M1219I 0.62 tolerated(0.12) benign(0.001) TCGA-YG-AA3N-01 7 132174155 132174155 G A PLXNA4 Missense_Mutation p.P423S 0.19 deleterious(0.01) possibly_damaging(0.519) TCGA-YG-AA3N-01 7 132192556 132192556 G A PLXNA4 Silent p.G299G 0.19 TCGA-YG-AA3N-01 7 132193164 132193164 G A PLXNA4 Missense_Mutation p.P97S 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-YG-AA3N-01 7 134216674 134216674 C T AKR1B10 Silent p.F83F 0.17 TCGA-YG-AA3N-01 7 134221844 134221844 G A AKR1B10 Silent p.Q198Q 0.07 TCGA-YG-AA3N-01 7 134256405 134256405 G A AKR1B15 Missense_Mutation p.G162E 0.21 deleterious(0.04) benign(0.29) TCGA-YG-AA3N-01 7 136587940 136587940 C T CHRM2 Intron 0.19 TCGA-YG-AA3N-01 7 136699661 136699661 C T CHRM2 Missense_Mutation p.P17S 0.19 tolerated(0.1) probably_damaging(1) TCGA-YG-AA3N-01 7 136699928 136699928 G A CHRM2 Missense_Mutation p.V106I 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-YG-AA3N-01 7 136700126 136700126 G A CHRM2 Missense_Mutation p.E172K 0.17 tolerated(0.15) benign(0.002) TCGA-YG-AA3N-01 7 136700269 136700269 G A CHRM2 Silent p.K219K 0.25 TCGA-YG-AA3N-01 7 137028334 137028334 C T PTN 5'UTR 0.20 TCGA-YG-AA3N-01 7 137206622 137206622 G A DGKI Silent p.L746L 0.47 TCGA-YG-AA3N-01 7 138391325 138391325 C T ATP6V0A4 3'UTR 0.23 TCGA-YG-AA3N-01 7 138394392 138394392 G A ATP6V0A4 Silent p.F802F 0.07 TCGA-YG-AA3N-01 7 138579268 138579268 G A KIAA1549 Silent p.V1284V 0.15 TCGA-YG-AA3N-01 7 138602254 138602254 G A KIAA1549 Silent p.T706T 0.14 TCGA-YG-AA3N-01 7 138603075 138603075 G A KIAA1549 Silent p.L433L 0.22 TCGA-YG-AA3N-01 7 139611041 139611041 G A TBXAS1 Missense_Mutation p.R86Q 0.11 tolerated(0.4) benign(0.079) TCGA-YG-AA3N-01 7 139661933 139661933 C T TBXAS1 Silent p.I392I 0.19 TCGA-YG-AA3N-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.52 deleterious(0) probably_damaging(0.967) TCGA-YG-AA3N-01 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.52 deleterious(0) possibly_damaging(0.838) TCGA-YG-AA3N-01 7 141418986 141418986 G A WEE2 Missense_Mutation p.D234N 0.52 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 7 141427209 141427209 C T WEE2 Silent p.L500L 0.17 TCGA-YG-AA3N-01 7 141464222 141464222 C T TAS2R3 Silent p.S88S 0.15 TCGA-YG-AA3N-01 7 141536960 141536960 C T PRSS37 Silent p.R173R 0.20 TCGA-YG-AA3N-01 7 141630006 141630006 C T CLEC5A Silent p.Q155Q 0.46 TCGA-YG-AA3N-01 7 141672965 141672965 G A TAS2R38 Silent p.F175F 0.11 TCGA-YG-AA3N-01 7 141722151 141722151 G A MGAM Missense_Mutation p.G265D 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-YG-AA3N-01 7 141726990 141726990 G A MGAM Missense_Mutation p.G353E 0.14 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 141750588 141750588 C T MGAM Missense_Mutation p.P910L 0.18 tolerated(0.31) benign(0.019) TCGA-YG-AA3N-01 7 141765164 141765164 G A MGAM Missense_Mutation p.G1505E 0.28 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 7 141802440 141802440 G A MGAM Silent p.G1762G 0.20 TCGA-YG-AA3N-01 7 141803141 141803141 G A MGAM Missense_Mutation p.E1800K 0.17 tolerated(1) benign(0.015) TCGA-YG-AA3N-01 7 141951970 141951970 T G PRSS58 3'UTR 0.25 TCGA-YG-AA3N-01 7 142045568 142045568 G A TRBV4-2 Missense_Mutation p.M32I 0.10 tolerated(0.14) benign(0.065) TCGA-YG-AA3N-01 7 142197840 142197840 G A TRBV11-2 RNA 0.13 TCGA-YG-AA3N-01 7 142224272 142224272 G A TRBV11-1 5'UTR 0.17 TCGA-YG-AA3N-01 7 142251103 142251103 G A TRBV6-4 Missense_Mutation p.S12F 0.16 tolerated(0.09) benign(0.002) TCGA-YG-AA3N-01 7 142334683 142334683 C T TRBV20-1 Silent p.I35I 0.24 TCGA-YG-AA3N-01 7 142460886 142460886 C T PRSS1 3'UTR 0.20 TCGA-YG-AA3N-01 7 142481784 142481784 C T PRSS3P2 RNA 0.17 TCGA-YG-AA3N-01 7 142481790 142481790 G A PRSS3P2 RNA 0.17 TCGA-YG-AA3N-01 7 142498826 142498826 G A TRBC2 Missense_Mutation p.G35S 0.17 deleterious(0.01) probably_damaging(0.919) TCGA-YG-AA3N-01 7 142569706 142569706 G A TRPV6 Silent p.I644I 0.20 TCGA-YG-AA3N-01 7 142573548 142573548 G A TRPV6 Missense_Mutation p.S291F 0.15 deleterious(0) probably_damaging(0.95) TCGA-YG-AA3N-01 7 142622597 142622597 C T TRPV5 Intron 0.27 TCGA-YG-AA3N-01 7 142651377 142651377 G A KEL Missense_Mutation p.S273F 0.21 tolerated(0.44) benign(0.007) TCGA-YG-AA3N-01 7 142881102 142881102 G A TAS2R39 Silent p.K197K 0.06 TCGA-YG-AA3N-01 7 143018575 143018575 C T CLCN1 Missense_Mutation p.P184L 0.15 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 7 143018576 143018576 C T CLCN1 Silent p.P184P 0.14 TCGA-YG-AA3N-01 7 143096484 143096484 C T EPHA1 Silent p.R286R 0.19 TCGA-YG-AA3N-01 7 143096485 143096485 C T EPHA1 Missense_Mutation p.R286Q 0.18 deleterious(0) possibly_damaging(0.491) TCGA-YG-AA3N-01 7 143175323 143175323 C T TAS2R41 Silent p.L120L 0.17 TCGA-YG-AA3N-01 7 143270292 143270292 G A CTAGE15 Missense_Mutation p.R461K 0.11 tolerated(1) benign(0) TCGA-YG-AA3N-01 7 143453526 143453526 C T CTAGE6 Missense_Mutation p.R409Q 0.32 tolerated(0.08) benign(0.22) TCGA-YG-AA3N-01 7 143453552 143453552 C T CTAGE6 Silent p.R400R 0.11 TCGA-YG-AA3N-01 7 143632825 143632825 C T OR2F2 Missense_Mutation p.P167L 0.12 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3N-01 7 143632826 143632826 C T OR2F2 Silent p.P167P 0.12 TCGA-YG-AA3N-01 7 143633000 143633000 C T OR2F2 Silent p.I225I 0.23 TCGA-YG-AA3N-01 7 143657589 143657589 C T OR2F1 Missense_Mutation p.H176Y 0.25 deleterious(0.01) probably_damaging(0.914) TCGA-YG-AA3N-01 7 143701836 143701836 C T OR6B1 Silent p.F249F 0.12 TCGA-YG-AA3N-01 7 143747587 143747587 C T OR2A5 Silent p.S31S 0.18 TCGA-YG-AA3N-01 7 143792475 143792475 C T OR2A12 Missense_Mutation p.S92F 0.16 deleterious(0.03) benign(0.078) TCGA-YG-AA3N-01 7 143807140 143807140 C T OR2A2 Silent p.S155S 0.18 TCGA-YG-AA3N-01 7 143827066 143827066 G A OR2A14 Silent p.L287L 0.17 TCGA-YG-AA3N-01 7 144060387 144060387 G A ARHGEF5 Missense_Mutation p.E209K 0.09 tolerated(0.15) benign(0.018) TCGA-YG-AA3N-01 7 144062344 144062344 G A ARHGEF5 Missense_Mutation p.R861K 0.10 tolerated(0.08) benign(0.036) TCGA-YG-AA3N-01 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.13 tolerated(0.68) benign(0.058) TCGA-YG-AA3N-01 7 148700830 148700830 G A PDIA4 3'UTR 0.32 TCGA-YG-AA3N-01 7 148702320 148702320 G A PDIA4 Silent p.L479L 0.18 TCGA-YG-AA3N-01 7 148702321 148702321 G A PDIA4 Silent p.I478I 0.18 TCGA-YG-AA3N-01 7 149129254 149129254 G A ZNF777 Silent p.F703F 0.61 TCGA-YG-AA3N-01 7 149476194 149476194 G A SSPO Intron 0.52 TCGA-YG-AA3N-01 7 149493570 149493570 C T SSPO RNA 0.15 TCGA-YG-AA3N-01 7 149503039 149503039 G A SSPO RNA 0.19 TCGA-YG-AA3N-01 7 149558220 149558220 C T ZNF862 Silent p.I657I 0.15 TCGA-YG-AA3N-01 7 149981892 149981892 C T ACTR3C Missense_Mutation p.D172N 0.10 deleterious(0.04) probably_damaging(0.994) TCGA-YG-AA3N-01 7 150034602 150034602 G A LRRC61 Missense_Mutation p.E218K 0.11 deleterious(0.01) possibly_damaging(0.687) TCGA-YG-AA3N-01 7 150171314 150171314 G A GIMAP8 Silent p.S299S 0.12 TCGA-YG-AA3N-01 7 150269582 150269582 G A GIMAP4 Missense_Mutation p.G142R 0.22 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 7 150327166 150327166 G C GIMAP6 Missense_Mutation p.P22R 0.19 deleterious(0.01) benign(0.317) TCGA-YG-AA3N-01 7 150417327 150417327 G A GIMAP1 Missense_Mutation p.E79K 0.19 tolerated(0.17) benign(0.201) TCGA-YG-AA3N-01 7 150417427 150417427 C T GIMAP1 Missense_Mutation p.P112L 0.20 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 150440011 150440011 G A GIMAP5 Missense_Mutation p.E262K 0.15 tolerated(0.11) benign(0.134) TCGA-YG-AA3N-01 7 150499405 150499405 G A TMEM176A Missense_Mutation p.G93R 0.20 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 7 150500750 150500750 G A TMEM176A Missense_Mutation p.A129T 0.26 deleterious(0) probably_damaging(0.979) TCGA-YG-AA3N-01 7 150556099 150556099 C T AOC1 Missense_Mutation p.P607S 0.28 tolerated(0.46) benign(0.03) TCGA-YG-AA3N-01 7 150647150 150647150 A G KCNH2 Intron 0.71 TCGA-YG-AA3N-01 7 150648693 150648693 G A KCNH2 Silent p.P596P 0.19 TCGA-YG-AA3N-01 7 150704279 150704279 G A NOS3 Missense_Mutation p.G676E 0.14 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 150905187 150905187 G A ABCF2 Silent p.T625T 0.10 TCGA-YG-AA3N-01 7 150905188 150905188 G A ABCF2 Missense_Mutation p.T625I 0.10 deleterious_low_confidence(0.02) benign(0.004) TCGA-YG-AA3N-01 7 151257651 151257651 G A PRKAG2 Missense_Mutation p.S546F 0.10 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 154659772 154659772 G A DPP6 Silent p.V594V 0.25 TCGA-YG-AA3N-01 7 156447377 156447377 C T RNF32 Missense_Mutation p.P128S 0.18 tolerated(0.07) probably_damaging(1) TCGA-YG-AA3N-01 7 156447378 156447378 C T RNF32 Missense_Mutation p.P128L 0.17 tolerated(0.24) probably_damaging(1) TCGA-YG-AA3N-01 7 156754902 156754902 C T NOM1 Missense_Mutation p.P564S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-YG-AA3N-01 7 156798316 156798316 G A MNX1 Silent p.F368F 0.50 TCGA-YG-AA3N-01 7 158672588 158672588 G A WDR60 Missense_Mutation p.E263K 0.11 tolerated(0.08) possibly_damaging(0.522) TCGA-YG-AA3N-01 7 21726796 21726796 G A DNAH11 Missense_Mutation p.E1908K 0.36 probably_damaging(0.999) TCGA-YG-AA3N-01 7 21781709 21781709 G A DNAH11 Missense_Mutation p.M2700I 0.29 benign(0.101) TCGA-YG-AA3N-01 7 21856257 21856257 G A DNAH11 Missense_Mutation p.G3509E 0.30 probably_damaging(0.993) TCGA-YG-AA3N-01 7 2415067 2415067 G A EIF3B Missense_Mutation p.V645I 0.24 tolerated(0.3) benign(0.03) TCGA-YG-AA3N-01 7 26412152 26412152 C T SNX10 Missense_Mutation p.S189L 0.25 tolerated_low_confidence(0.08) benign(0.017) TCGA-YG-AA3N-01 7 2740110 2740110 G A AMZ1 Missense_Mutation p.E9K 0.24 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3N-01 7 2946341 2946341 G A CARD11 Silent p.L1132L 0.43 TCGA-YG-AA3N-01 7 2969682 2969682 C T CARD11 Missense_Mutation p.D533N 0.17 tolerated(0.38) benign(0.001) TCGA-YG-AA3N-01 7 30795426 30795426 G A INMT Missense_Mutation p.G251R 0.30 deleterious(0.01) probably_damaging(0.945) TCGA-YG-AA3N-01 7 30922584 30922584 C T FAM188B Missense_Mutation p.P734L 0.28 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 7 31123845 31123845 G A ADCYAP1R1 Missense_Mutation p.E140K 0.20 tolerated(0.16) benign(0.14) TCGA-YG-AA3N-01 7 31735115 31735115 G A PPP1R17 Missense_Mutation p.D39N 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-YG-AA3N-01 7 31746868 31746868 G A PPP1R17 Missense_Mutation p.E147K 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YG-AA3N-01 7 31829796 31829796 G A PDE1C Intron 0.27 TCGA-YG-AA3N-01 7 34851465 34851465 C T NPSR1 Silent p.F156F 0.34 TCGA-YG-AA3N-01 7 34888276 34888276 G A NPSR1 Splice_Site p.X342_splice 0.29 TCGA-YG-AA3N-01 7 38393411 38393411 C T TRGV4 Missense_Mutation p.D87N 0.41 tolerated(0.35) benign(0.001) TCGA-YG-AA3N-01 7 42977147 42977147 A T MRPL32 Missense_Mutation p.K180M 0.55 deleterious(0.01) possibly_damaging(0.676) TCGA-YG-AA3N-01 7 43447294 43447294 C T HECW1 Silent p.I255I 0.26 TCGA-YG-AA3N-01 7 43594246 43594246 C T HECW1 Silent p.F1522F 0.33 TCGA-YG-AA3N-01 7 44190560 44190560 C T GCK Missense_Mutation p.D161N 0.29 deleterious(0.04) possibly_damaging(0.818) TCGA-YG-AA3N-01 7 44578823 44578823 C T NPC1L1 Silent p.R391R 0.24 TCGA-YG-AA3N-01 7 44609441 44609441 G A DDX56 Missense_Mutation p.H396Y 0.44 tolerated(1) benign(0) TCGA-YG-AA3N-01 7 45113947 45113947 C T CCM2 Missense_Mutation p.H353Y 0.34 deleterious(0.01) possibly_damaging(0.601) TCGA-YG-AA3N-01 7 45725722 45725722 C T ADCY1 Silent p.F745F 0.23 TCGA-YG-AA3N-01 7 47947753 47947753 G A PKD1L1 Silent p.A441A 0.47 TCGA-YG-AA3N-01 7 4798813 4798813 C T FOXK1 Missense_Mutation p.S459F 0.29 tolerated(0.26) benign(0.029) TCGA-YG-AA3N-01 7 48280529 48280529 G A ABCA13 Silent p.L376L 0.33 TCGA-YG-AA3N-01 7 48452135 48452135 G A ABCA13 Silent p.Q4138Q 0.35 TCGA-YG-AA3N-01 7 48634332 48634332 C T ABCA13 Silent p.P4889P 0.26 TCGA-YG-AA3N-01 7 53103730 53103730 G A POM121L12 Silent p.G122G 0.31 TCGA-YG-AA3N-01 7 5340088 5340088 C A SLC29A4 Silent p.T415T 0.26 TCGA-YG-AA3N-01 7 5340281 5340281 C T SLC29A4 Missense_Mutation p.R480W 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 54617553 54617553 C T VSTM2A Silent p.I108I 0.33 TCGA-YG-AA3N-01 7 55219001 55219001 C T EGFR Missense_Mutation p.P192S 0.22 tolerated(0.52) benign(0.009) TCGA-YG-AA3N-01 7 57188024 57188024 C T ZNF479 Silent p.S366S 0.38 TCGA-YG-AA3N-01 7 57528745 57528745 C T ZNF716 Missense_Mutation p.S193L 0.36 deleterious(0.05) probably_damaging(0.997) TCGA-YG-AA3N-01 7 6189540 6189540 G A USP42 Silent p.T571T 0.36 TCGA-YG-AA3N-01 7 6205227 6205227 G A CYTH3 Silent p.I307I 0.25 TCGA-YG-AA3N-01 7 6210830 6210830 G A CYTH3 Intron 0.38 TCGA-YG-AA3N-01 7 63529305 63529305 T A ZNF727 Missense_Mutation p.S14T 0.22 deleterious(0.04) probably_damaging(0.95) TCGA-YG-AA3N-01 7 64643450 64643450 G A INTS4L1 RNA 0.17 TCGA-YG-AA3N-01 7 6505869 6505869 G A KDELR2 Missense_Mutation p.T146I 0.26 deleterious(0) possibly_damaging(0.486) TCGA-YG-AA3N-01 7 65547373 65547373 C T ASL Nonsense_Mutation p.Q76* 0.25 TCGA-YG-AA3N-01 7 66301743 66301743 G A GTF2IRD1P1 RNA 0.27 TCGA-YG-AA3N-01 7 72400552 72400552 C T POM121 Missense_Mutation p.S128F 0.20 deleterious(0) possibly_damaging(0.852) TCGA-YG-AA3N-01 7 73280224 73280224 C T WBSCR28 3'Flank 0.18 TCGA-YG-AA3N-01 7 7410406 7410406 C T COL28A1 Missense_Mutation p.E1006K 0.35 tolerated(0.3) benign(0.017) TCGA-YG-AA3N-01 7 75612954 75612954 G A POR Missense_Mutation p.R316K 0.14 tolerated(0.12) benign(0.003) TCGA-YG-AA3N-01 7 76922473 76922473 C T CCDC146 Nonsense_Mutation p.R874* 0.20 TCGA-YG-AA3N-01 7 8153628 8153628 G A ICA1 Silent p.F459F 0.09 TCGA-YG-AA3N-01 7 81589103 81589103 G A CACNA2D1 Silent p.F1003F 0.17 TCGA-YG-AA3N-01 7 81641519 81641519 C T CACNA2D1 Missense_Mutation p.G438E 0.20 deleterious(0.01) benign(0.228) TCGA-YG-AA3N-01 7 82451790 82451790 G A PCLO Intron 0.57 TCGA-YG-AA3N-01 7 82544610 82544610 G A PCLO Missense_Mutation p.S4231F 0.17 unknown(0) TCGA-YG-AA3N-01 7 82544905 82544905 G A PCLO Missense_Mutation p.R4133C 0.19 unknown(0) TCGA-YG-AA3N-01 7 82578803 82578803 C T PCLO Missense_Mutation p.E3701K 0.16 unknown(0) TCGA-YG-AA3N-01 7 82582764 82582764 C T PCLO Missense_Mutation p.R2502K 0.46 unknown(0) TCGA-YG-AA3N-01 7 82583475 82583475 G A PCLO Missense_Mutation p.S2265F 0.49 unknown(0) TCGA-YG-AA3N-01 7 82585272 82585272 C T PCLO Missense_Mutation p.R1666Q 0.19 unknown(0) TCGA-YG-AA3N-01 7 82586102 82586102 G A PCLO Silent p.L1389L 0.21 TCGA-YG-AA3N-01 7 83036537 83036537 G A SEMA3E Missense_Mutation p.S230L 0.12 deleterious(0.02) benign(0.04) TCGA-YG-AA3N-01 7 83689841 83689841 C T SEMA3A Missense_Mutation p.E163K 0.24 deleterious(0) probably_damaging(0.914) TCGA-YG-AA3N-01 7 84629132 84629132 C T SEMA3D Missense_Mutation p.R653Q 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-YG-AA3N-01 7 86394321 86394321 G A GRM3 Splice_Site 0.18 TCGA-YG-AA3N-01 7 86394322 86394322 G A GRM3 Intron 0.18 TCGA-YG-AA3N-01 7 86416134 86416134 C T GRM3 Silent p.P342P 0.23 TCGA-YG-AA3N-01 7 86479733 86479733 G A GRM3 Silent p.V813V 0.22 TCGA-YG-AA3N-01 7 86537837 86537837 C T KIAA1324L Silent p.L794L 0.11 TCGA-YG-AA3N-01 7 86541510 86541510 G A KIAA1324L Nonsense_Mutation p.Q683* 0.22 TCGA-YG-AA3N-01 7 87069591 87069591 C T ABCB4 Missense_Mutation p.G495E 0.18 tolerated(1) benign(0.001) TCGA-YG-AA3N-01 7 87150166 87150166 G A ABCB1 Silent p.F904F 0.23 TCGA-YG-AA3N-01 7 87170679 87170679 G A ABCB1 Silent p.F771F 0.24 TCGA-YG-AA3N-01 7 87179797 87179797 C T ABCB1 Missense_Mutation p.R404Q 0.09 deleterious(0) probably_damaging(0.983) TCGA-YG-AA3N-01 7 87214993 87214993 G A ABCB1 Missense_Mutation p.R41C 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-YG-AA3N-01 7 87760586 87760586 A T ADAM22 Silent p.I276I 0.15 TCGA-YG-AA3N-01 7 88956682 88956682 G A ZNF804B Missense_Mutation p.E92K 0.16 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 7 88963275 88963275 T A ZNF804B Missense_Mutation p.S327T 0.20 tolerated(0.52) possibly_damaging(0.678) TCGA-YG-AA3N-01 7 88963839 88963839 C T ZNF804B Nonsense_Mutation p.Q515* 0.13 TCGA-YG-AA3N-01 7 88965077 88965077 C T ZNF804B Silent p.I927I 0.20 TCGA-YG-AA3N-01 7 89753496 89753496 G A RP5-1121E10.2 5'Flank 0.15 TCGA-YG-AA3N-01 7 90528654 90528654 C T CDK14 Missense_Mutation p.P212S 0.19 tolerated(0.35) benign(0.063) TCGA-YG-AA3N-01 7 91632296 91632296 G A AKAP9 Missense_Mutation p.G1022E 0.20 benign(0.052) TCGA-YG-AA3N-01 7 92020506 92020506 C T ANKIB1 Silent p.D693D 0.20 TCGA-YG-AA3N-01 7 92763729 92763729 C T SAMD9L Missense_Mutation p.R519K 0.16 tolerated(0.47) benign(0.06) TCGA-YG-AA3N-01 7 92838117 92838117 C T HEPACAM2 Missense_Mutation p.G263E 0.19 deleterious(0.03) probably_damaging(1) TCGA-YG-AA3N-01 7 93065306 93065306 C T CALCR Silent p.G403G 0.19 TCGA-YG-AA3N-01 7 93065398 93065398 G A CALCR Silent p.L373L 0.12 TCGA-YG-AA3N-01 7 94054481 94054481 C T COL1A2 Missense_Mutation p.P909L 0.08 unknown(0) TCGA-YG-AA3N-01 7 94055344 94055344 T C COL1A2 Missense_Mutation p.V993A 0.24 unknown(0) TCGA-YG-AA3N-01 7 94913450 94913450 C A PPP1R9A Silent p.S1139S 0.19 TCGA-YG-AA3N-01 7 95115375 95115375 G A ASB4 Missense_Mutation p.G31E 0.19 tolerated(1) benign(0) TCGA-YG-AA3N-01 7 97362030 97362030 G A TAC1 Missense_Mutation p.D36N 0.58 tolerated(0.09) probably_damaging(0.987) TCGA-YG-AA3N-01 7 98513496 98513496 C T TRRAP Missense_Mutation p.P784S 0.25 probably_damaging(0.948) TCGA-YG-AA3N-01 7 98530944 98530944 G A TRRAP Silent p.G1311G 0.08 TCGA-YG-AA3N-01 7 99377637 99377637 C T CYP3A4 Missense_Mutation p.G48E 0.17 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 7 99564903 99564903 G A AZGP1 Missense_Mutation p.P207L 0.50 deleterious(0) benign(0.178) TCGA-YG-AA3N-01 7 99569470 99569470 C T AZGP1 Missense_Mutation p.G79E 0.13 tolerated(0.11) benign(0.278) TCGA-YG-AA3N-01 7 99655488 99655488 C T ZSCAN21 Silent p.F189F 0.20 TCGA-YG-AA3N-01 7 99798975 99798975 G A STAG3 Splice_Site p.X740_splice 0.18 TCGA-YG-AA3N-01 7 99799516 99799516 T C GATS 3'UTR 0.58 TCGA-YG-AA3N-01 7 99950693 99950693 C T PILRB 5'UTR 0.17 TCGA-YG-AA3N-01 7 99950694 99950694 C T PILRB 5'UTR 0.17 TCGA-YG-AA3N-01 7 99997230 99997230 C T PILRA Missense_Mutation p.P262S 0.17 tolerated(0.06) probably_damaging(0.992) TCGA-YG-AA3N-01 8 10383168 10383168 C T PRSS55 Missense_Mutation p.P25S 0.43 tolerated(0.05) benign(0.009) TCGA-YG-AA3N-01 8 10383169 10383169 C T PRSS55 Missense_Mutation p.P25L 0.41 deleterious(0.01) benign(0.199) TCGA-YG-AA3N-01 8 10465322 10465322 G A RP1L1 Missense_Mutation p.P2096S 0.34 unknown(0) TCGA-YG-AA3N-01 8 105026781 105026781 C T RIMS2 Missense_Mutation p.P1091L 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-YG-AA3N-01 8 105507325 105507325 G A LRP12 Missense_Mutation p.P565S 0.22 deleterious(0) possibly_damaging(0.848) TCGA-YG-AA3N-01 8 106456570 106456570 G A ZFPM2 Missense_Mutation p.G88R 0.25 tolerated(0.64) benign(0.002) TCGA-YG-AA3N-01 8 106813274 106813274 G A ZFPM2 Splice_Site p.X322_splice 0.36 TCGA-YG-AA3N-01 8 106814398 106814398 C T ZFPM2 Silent p.F696F 0.26 TCGA-YG-AA3N-01 8 10756067 10756067 G A XKR6 Nonsense_Mutation p.R441* 0.39 TCGA-YG-AA3N-01 8 107752653 107752653 A T OXR1 Missense_Mutation p.K750I 0.32 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3N-01 8 107782019 107782019 C T ABRA Missense_Mutation p.D134N 0.24 tolerated(0.38) benign(0.022) TCGA-YG-AA3N-01 8 108348392 108348392 G A ANGPT1 Silent p.I187I 0.26 TCGA-YG-AA3N-01 8 109796341 109796341 T C TMEM74 3'UTR 0.33 TCGA-YG-AA3N-01 8 110302163 110302163 C T NUDCD1 Splice_Site p.X214_splice 0.18 TCGA-YG-AA3N-01 8 110457775 110457775 G A PKHD1L1 Missense_Mutation p.D1893N 0.32 tolerated(0.65) benign(0.002) TCGA-YG-AA3N-01 8 110986309 110986309 G A KCNV1 Silent p.F103F 0.15 TCGA-YG-AA3N-01 8 11282004 11282004 C T FAM167A Missense_Mutation p.D175N 0.33 tolerated(0.09) probably_damaging(0.993) TCGA-YG-AA3N-01 8 11282140 11282140 C T FAM167A Silent p.E129E 0.35 TCGA-YG-AA3N-01 8 113518934 113518934 G A CSMD3 Silent p.S1627S 0.30 TCGA-YG-AA3N-01 8 11407739 11407739 C T BLK Missense_Mutation p.S147F 0.20 deleterious(0.01) probably_damaging(0.943) TCGA-YG-AA3N-01 8 116616559 116616559 G A TRPS1 Missense_Mutation p.S546F 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YG-AA3N-01 8 118184954 118184954 G A SLC30A8 3'UTR 0.24 TCGA-YG-AA3N-01 8 11831554 11831554 C T DEFB136 Silent p.G43G 0.23 TCGA-YG-AA3N-01 8 119634134 119634134 C T SAMD12 5'UTR 0.42 TCGA-YG-AA3N-01 8 119936909 119936909 C T TNFRSF11B Missense_Mutation p.G304R 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-YG-AA3N-01 8 120118112 120118112 C T COLEC10 Silent p.S172S 0.36 TCGA-YG-AA3N-01 8 124663854 124663854 C T KLHL38 Missense_Mutation p.G438E 0.32 deleterious(0) probably_damaging(0.988) TCGA-YG-AA3N-01 8 131792841 131792841 C T ADCY8 Missense_Mutation p.R1184K 0.36 tolerated(0.2) benign(0.002) TCGA-YG-AA3N-01 8 131792884 131792884 G A ADCY8 Missense_Mutation p.L1170F 0.24 deleterious(0.01) benign(0.075) TCGA-YG-AA3N-01 8 133192479 133192479 G A KCNQ3 Silent p.I234I 0.24 TCGA-YG-AA3N-01 8 133906035 133906035 G A TG Silent p.G954G 0.30 TCGA-YG-AA3N-01 8 139158287 139158287 C T FAM135B Missense_Mutation p.S1152N 0.10 deleterious(0) possibly_damaging(0.867) TCGA-YG-AA3N-01 8 139207541 139207541 G A FAM135B Missense_Mutation p.A278V 0.39 tolerated(0.35) benign(0.12) TCGA-YG-AA3N-01 8 139611078 139611078 C T COL22A1 Missense_Mutation p.G1417R 0.23 unknown(0) TCGA-YG-AA3N-01 8 142161855 142161855 G A DENND3 Silent p.S251S 0.20 TCGA-YG-AA3N-01 8 143747409 143747409 C T JRK RNA 0.22 TCGA-YG-AA3N-01 8 143999020 143999020 G A CYP11B2 Silent p.F79F 0.35 TCGA-YG-AA3N-01 8 14412436 14412436 C T SGCZ Splice_Site p.X14_splice 0.38 TCGA-YG-AA3N-01 8 144332265 144332265 G A ZFP41 Silent p.K84K 0.32 TCGA-YG-AA3N-01 8 15508292 15508292 A T TUSC3 Missense_Mutation p.D132V 0.27 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 8 15517053 15517053 C T TUSC3 Missense_Mutation p.P155L 0.31 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3N-01 8 16001079 16001079 C T MSR1 Missense_Mutation p.G341R 0.22 tolerated(0.32) benign(0.013) TCGA-YG-AA3N-01 8 16021742 16021742 C T MSR1 Missense_Mutation p.E217K 0.38 tolerated(0.29) possibly_damaging(0.455) TCGA-YG-AA3N-01 8 16021743 16021743 C T MSR1 Silent p.E216E 0.38 TCGA-YG-AA3N-01 8 17163357 17163357 C T MTMR7 Missense_Mutation p.E421K 0.27 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3N-01 8 17573282 17573282 G A MTUS1 Missense_Mutation p.P860S 0.31 tolerated(0.07) possibly_damaging(0.477) TCGA-YG-AA3N-01 8 2048785 2048785 G A MYOM2 Missense_Mutation p.E854K 0.23 tolerated(0.85) benign(0.026) TCGA-YG-AA3N-01 8 2057224 2057224 G A MYOM2 Missense_Mutation p.D1028N 0.30 deleterious(0) possibly_damaging(0.69) TCGA-YG-AA3N-01 8 21823813 21823813 C T XPO7 Intron 0.27 TCGA-YG-AA3N-01 8 21965391 21965391 G A NUDT18 Missense_Mutation p.T131I 0.31 deleterious(0) possibly_damaging(0.893) TCGA-YG-AA3N-01 8 23225526 23225526 G A LOXL2 Silent p.S113S 0.31 TCGA-YG-AA3N-01 8 25890654 25890654 C T EBF2 Silent p.K166K 0.27 TCGA-YG-AA3N-01 8 27099193 27099193 C T STMN4 Splice_Site p.X64_splice 0.39 TCGA-YG-AA3N-01 8 27888871 27888871 C T NUGGC Silent p.L599L 0.31 TCGA-YG-AA3N-01 8 27967945 27967945 G A ELP3 Missense_Mutation p.R151Q 0.09 deleterious(0.03) possibly_damaging(0.876) TCGA-YG-AA3N-01 8 2857622 2857622 C T CSMD1 Silent p.V2687V 0.30 TCGA-YG-AA3N-01 8 2965300 2965300 G A CSMD1 Nonsense_Mutation p.Q2259* 0.31 TCGA-YG-AA3N-01 8 2967783 2967783 G A CSMD1 Silent p.L2169L 0.35 TCGA-YG-AA3N-01 8 3008918 3008918 C T CSMD1 Splice_Site p.X2011_splice 0.30 TCGA-YG-AA3N-01 8 30699864 30699864 C T TEX15 Missense_Mutation p.G2224R 0.27 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 8 3224743 3224743 G A CSMD1 Missense_Mutation p.H976Y 0.23 probably_damaging(0.998) TCGA-YG-AA3N-01 8 35406992 35406992 G A UNC5D Missense_Mutation p.E96K 0.29 deleterious(0.02) possibly_damaging(0.492) TCGA-YG-AA3N-01 8 35541076 35541076 G A UNC5D Silent p.L194L 0.20 TCGA-YG-AA3N-01 8 38122402 38122402 A G PPAPDC1B Intron 0.22 TCGA-YG-AA3N-01 8 38187043 38187043 G A WHSC1L1 Silent p.S478S 0.25 TCGA-YG-AA3N-01 8 38205207 38205207 G A WHSC1L1 Silent p.I161I 0.29 TCGA-YG-AA3N-01 8 38677312 38677312 C T TACC1 Missense_Mutation p.P184S 0.22 tolerated(0.08) benign(0.011) TCGA-YG-AA3N-01 8 39131868 39131868 C T ADAM32 Nonsense_Mutation p.Q747* 0.28 TCGA-YG-AA3N-01 8 41557027 41557027 G A ANK1 Missense_Mutation p.S875F 0.33 tolerated(0.44) possibly_damaging(0.468) TCGA-YG-AA3N-01 8 42234514 42234514 C T DKK4 Missense_Mutation p.G17E 0.23 deleterious(0.01) possibly_damaging(0.526) TCGA-YG-AA3N-01 8 42586882 42586882 C T CHRNB3 Silent p.T144T 0.46 TCGA-YG-AA3N-01 8 42939945 42939945 C T FNTA Missense_Mutation p.A313V 0.28 deleterious(0) probably_damaging(0.978) TCGA-YG-AA3N-01 8 4495064 4495064 G A CSMD1 Silent p.G34G 0.30 TCGA-YG-AA3N-01 8 53038667 53038667 G A ST18 Silent p.I900I 0.25 TCGA-YG-AA3N-01 8 53085133 53085133 C T ST18 Missense_Mutation p.M96I 0.36 tolerated(0.43) benign(0) TCGA-YG-AA3N-01 8 53536325 53536325 T A RB1CC1 3'UTR 0.26 TCGA-YG-AA3N-01 8 57354009 57354009 C T PENK Missense_Mutation p.R209Q 0.06 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 8 57354361 57354361 C T PENK Missense_Mutation p.E92K 0.28 tolerated(0.16) benign(0.15) TCGA-YG-AA3N-01 8 59412710 59412710 G A CYP7A1 5'UTR 0.28 TCGA-YG-AA3N-01 8 65509186 65509186 C T CYP7B1 3'UTR 0.26 TCGA-YG-AA3N-01 8 6735432 6735432 C T DEFB1 5'UTR 0.26 TCGA-YG-AA3N-01 8 67753265 67753265 G T SGK3 Missense_Mutation p.V300F 0.22 deleterious(0) possibly_damaging(0.632) TCGA-YG-AA3N-01 8 68346383 68346383 G A CPA6 Nonsense_Mutation p.R311* 0.37 TCGA-YG-AA3N-01 8 68658292 68658292 G A CPA6 Silent p.L25L 0.15 TCGA-YG-AA3N-01 8 68950469 68950469 C T PREX2 Nonsense_Mutation p.Q261* 0.24 TCGA-YG-AA3N-01 8 69020490 69020490 G A PREX2 Silent p.L954L 0.33 TCGA-YG-AA3N-01 8 6914085 6914085 G A DEFA5 Silent p.S45S 0.30 TCGA-YG-AA3N-01 8 7308698 7308698 G A SPAG11B Intron 0.17 TCGA-YG-AA3N-01 8 75227284 75227284 G A JPH1 Silent p.G317G 0.27 TCGA-YG-AA3N-01 8 76459906 76459906 G A HNF4G Missense_Mutation p.M114I 0.23 deleterious(0.02) benign(0.309) TCGA-YG-AA3N-01 8 77616345 77616345 C T ZFHX4 Missense_Mutation p.P8S 0.36 possibly_damaging(0.803) TCGA-YG-AA3N-01 8 77616757 77616757 C T ZFHX4 Missense_Mutation p.S145F 0.30 possibly_damaging(0.683) TCGA-YG-AA3N-01 8 77617473 77617473 G A ZFHX4 Missense_Mutation p.G384R 0.40 probably_damaging(0.979) TCGA-YG-AA3N-01 8 77766655 77766655 G A ZFHX4 Missense_Mutation p.V2500I 0.37 benign(0) TCGA-YG-AA3N-01 8 77895944 77895944 G A PEX2 Silent p.F157F 0.30 TCGA-YG-AA3N-01 8 87229946 87229946 G A SLC7A13 Missense_Mutation p.S311L 0.26 deleterious(0.01) benign(0.327) TCGA-YG-AA3N-01 8 92346597 92346597 G A SLC26A7 Silent p.V239V 0.44 TCGA-YG-AA3N-01 8 93003921 93003921 C T RUNX1T1 Missense_Mutation p.D324N 0.22 tolerated(0.12) possibly_damaging(0.889) TCGA-YG-AA3N-01 8 93003922 93003922 C T RUNX1T1 Silent p.R323R 0.22 TCGA-YG-AA3N-01 8 93023292 93023292 G A RUNX1T1 Missense_Mutation p.H177Y 0.36 deleterious(0) probably_damaging(0.951) TCGA-YG-AA3N-01 8 93026936 93026936 C T RUNX1T1 Silent p.Q124Q 0.28 TCGA-YG-AA3N-01 8 98289103 98289103 G A TSPYL5 Missense_Mutation p.R324C 0.24 deleterious(0.04) benign(0.024) TCGA-YG-AA3N-01 8 99129289 99129289 C T HRSP12 Silent p.A12A 0.13 TCGA-YG-AA3N-01 9 100090404 100090404 C T CCDC180 Silent p.F632F 0.40 TCGA-YG-AA3N-01 9 100689752 100689752 C T HEMGN Missense_Mutation p.E457K 0.44 deleterious(0.01) probably_damaging(0.953) TCGA-YG-AA3N-01 9 100919774 100919774 C T CORO2A Missense_Mutation p.G57R 0.51 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 9 105767518 105767518 C T CYLC2 Missense_Mutation p.S202L 0.44 deleterious(0) unknown(0) TCGA-YG-AA3N-01 9 107266598 107266598 C T OR13F1 Missense_Mutation p.H19Y 0.47 deleterious(0.03) benign(0.001) TCGA-YG-AA3N-01 9 108510368 108510368 C T TMEM38B Missense_Mutation p.T186I 0.41 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3N-01 9 112225602 112225602 C T PTPN3 Missense_Mutation p.G38D 0.40 tolerated(0.68) probably_damaging(0.997) TCGA-YG-AA3N-01 9 113509950 113509950 G A MUSK Silent p.V261V 0.41 TCGA-YG-AA3N-01 9 114206668 114206668 G A KIAA0368 Missense_Mutation p.S265F 0.59 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3N-01 9 116721 116721 G A FOXD4 3'UTR 0.19 TCGA-YG-AA3N-01 9 116811058 116811058 C T ZNF618 Silent p.F399F 0.38 TCGA-YG-AA3N-01 9 117568329 117568329 G A TNFSF15 5'UTR 0.50 TCGA-YG-AA3N-01 9 119976819 119976819 G A ASTN2 Missense_Mutation p.S278F 0.33 deleterious_low_confidence(0) unknown(0) TCGA-YG-AA3N-01 9 125289062 125289062 C A OR1N1 Nonsense_Mutation p.E171* 0.40 TCGA-YG-AA3N-01 9 125562682 125562682 C T OR1K1 Missense_Mutation p.S94L 0.52 deleterious(0.05) possibly_damaging(0.627) TCGA-YG-AA3N-01 9 125611986 125611986 T C RC3H2 Missense_Mutation p.I1166V 0.72 tolerated_low_confidence(0.22) benign(0.196) TCGA-YG-AA3N-01 9 125681995 125681995 G A ZBTB26 Silent p.S73S 0.29 TCGA-YG-AA3N-01 9 126133185 126133185 G A CRB2 Missense_Mutation p.G618E 0.19 deleterious(0) probably_damaging(0.931) TCGA-YG-AA3N-01 9 130507199 130507199 G A SH2D3C Missense_Mutation p.P482S 0.48 tolerated(0.1) probably_damaging(0.999) TCGA-YG-AA3N-01 9 133759358 133759358 C T ABL1 Missense_Mutation p.P580S 0.42 tolerated_low_confidence(0.15) benign(0.05) TCGA-YG-AA3N-01 9 135203189 135203189 G A SETX Missense_Mutation p.P1266S 0.34 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 9 136256560 136256560 C T C9orf96 Missense_Mutation p.R191C 0.52 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 9 139329222 139329222 G A INPP5E Silent p.F302F 0.62 TCGA-YG-AA3N-01 9 139563060 139563060 C T EGFL7 Silent p.F44F 0.49 TCGA-YG-AA3N-01 9 139874417 139874417 C T PTGDS Silent p.S117S 0.50 TCGA-YG-AA3N-01 9 139945722 139945722 G A ENTPD2 Nonsense_Mutation p.Q163* 0.50 TCGA-YG-AA3N-01 9 140777318 140777318 C T CACNA1B Silent p.F171F 0.21 TCGA-YG-AA3N-01 9 140870376 140870376 T C CACNA1B Missense_Mutation p.F521L 0.60 deleterious(0.03) benign(0.016) TCGA-YG-AA3N-01 9 14720328 14720328 C T CER1 Silent p.G188G 0.38 TCGA-YG-AA3N-01 9 14720372 14720372 C T CER1 Missense_Mutation p.E174K 0.40 deleterious(0.03) probably_damaging(0.954) TCGA-YG-AA3N-01 9 14842461 14842461 C T FREM1 Missense_Mutation p.E531K 0.44 deleterious(0.04) benign(0.213) TCGA-YG-AA3N-01 9 14859469 14859469 C T FREM1 Missense_Mutation p.D115N 0.34 deleterious(0.04) benign(0.058) TCGA-YG-AA3N-01 9 18777765 18777765 G A ADAMTSL1 Missense_Mutation p.E1180K 0.50 tolerated(0.65) probably_damaging(0.992) TCGA-YG-AA3N-01 9 22823363 22823363 C A RP11-399D6.2 RNA 0.45 TCGA-YG-AA3N-01 9 27218798 27218798 G A TEK Nonsense_Mutation p.W1029* 0.41 TCGA-YG-AA3N-01 9 27950650 27950650 G A LINGO2 Missense_Mutation p.S7L 0.47 tolerated(0.09) benign(0.193) TCGA-YG-AA3N-01 9 32631127 32631127 G A TAF1L Missense_Mutation p.S1484L 0.40 tolerated(0.49) benign(0.045) TCGA-YG-AA3N-01 9 35107762 35107762 G A FAM214B Silent p.S170S 0.35 TCGA-YG-AA3N-01 9 36091288 36091288 C A RECK Missense_Mutation p.P345T 0.34 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 9 38396033 38396033 G A ALDH1B1 Missense_Mutation p.M96I 0.43 deleterious(0.02) benign(0.012) TCGA-YG-AA3N-01 9 38396837 38396837 G A ALDH1B1 Silent p.K364K 0.36 TCGA-YG-AA3N-01 9 3898775 3898775 G A GLIS3 Silent p.L682L 0.44 TCGA-YG-AA3N-01 9 39149952 39149952 G A CNTNAP3 Silent p.G500G 0.58 TCGA-YG-AA3N-01 9 6012763 6012763 G A RANBP6 Missense_Mutation p.R949C 0.52 tolerated(0.06) possibly_damaging(0.608) TCGA-YG-AA3N-01 9 69201585 69201585 G A FOXD4L6 Missense_Mutation p.R10C 0.62 tolerated_low_confidence(0.06) benign(0.005) TCGA-YG-AA3N-01 9 72879268 72879268 C T SMC5 Silent p.I78I 0.49 TCGA-YG-AA3N-01 9 73240410 73240410 C T TRPM3 Intron 0.42 TCGA-YG-AA3N-01 9 74764515 74764515 C T GDA Nonsense_Mutation p.R14* 0.60 TCGA-YG-AA3N-01 9 75406811 75406811 G A TMC1 Missense_Mutation p.V412I 0.42 tolerated(0.07) benign(0.011) TCGA-YG-AA3N-01 9 77376979 77376979 G A TRPM6 Silent p.F1536F 0.65 TCGA-YG-AA3N-01 9 77473654 77473654 G A TRPM6 Missense_Mutation p.S15F 0.38 deleterious(0) possibly_damaging(0.861) TCGA-YG-AA3N-01 9 79117759 79117759 G A GCNT1 Silent p.V154V 0.61 TCGA-YG-AA3N-01 9 79910705 79910705 C T VPS13A Missense_Mutation p.S1252F 0.70 deleterious(0.01) benign(0.088) TCGA-YG-AA3N-01 9 93636963 93636963 G A SYK Missense_Mutation p.R338K 0.48 tolerated(0.3) benign(0.007) TCGA-YG-AA3N-01 9 95772632 95772632 C T FGD3 Silent p.L314L 0.22 TCGA-YG-AA3N-01 9 96021452 96021452 G A WNK2 Silent p.R874R 0.57 TCGA-YG-AA3N-01 X 100333901 100333901 C T TMEM35 5'UTR 0.65 TCGA-YG-AA3N-01 X 101092779 101092779 C T NXF5 Silent p.R298R 0.59 TCGA-YG-AA3N-01 X 101615444 101615444 C T NXF2B 3'UTR 0.38 TCGA-YG-AA3N-01 X 105281053 105281053 G A SERPINA7 5'UTR 0.70 TCGA-YG-AA3N-01 X 105970449 105970449 C T RNF128 Silent p.F102F 0.48 TCGA-YG-AA3N-01 X 106066494 106066494 G A TBC1D8B Missense_Mutation p.E209K 0.53 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3N-01 X 106112732 106112732 G A TBC1D8B Missense_Mutation p.E944K 0.69 tolerated(0.7) benign(0) TCGA-YG-AA3N-01 X 106116998 106116998 G A TBC1D8B Missense_Mutation p.E1056K 0.73 tolerated(0.49) benign(0.003) TCGA-YG-AA3N-01 X 107554057 107554057 C T COL4A6 Missense_Mutation p.G23E 0.32 unknown(0) TCGA-YG-AA3N-01 X 107976466 107976466 G C IRS4 Missense_Mutation p.R1037G 0.19 deleterious(0) unknown(0) TCGA-YG-AA3N-01 X 108696917 108696917 C T GUCY2F Missense_Mutation p.G402R 0.70 tolerated(0.7) probably_damaging(1) TCGA-YG-AA3N-01 X 109697269 109697269 G A RGAG1 Missense_Mutation p.G1142R 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3N-01 X 109697270 109697270 G A RGAG1 Missense_Mutation p.G1142E 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3N-01 X 109698597 109698597 G A RGAG1 3'UTR 0.67 TCGA-YG-AA3N-01 X 111697941 111697941 G A ZCCHC16 5'UTR 0.66 TCGA-YG-AA3N-01 X 119249407 119249407 G A RHOXF1 Silent p.F122F 0.53 TCGA-YG-AA3N-01 X 119668411 119668411 G A CUL4B Nonsense_Mutation p.Q749* 0.62 TCGA-YG-AA3N-01 X 122460008 122460008 G A GRIA3 Missense_Mutation p.E214K 0.54 tolerated(0.11) probably_damaging(1) TCGA-YG-AA3N-01 X 123554193 123554193 T C TENM1 Silent p.K1650K 0.73 TCGA-YG-AA3N-01 X 123805609 123805609 C T TENM1 Silent p.G364G 0.62 TCGA-YG-AA3N-01 X 127185585 127185585 A G ACTRT1 Missense_Mutation p.F201L 0.57 tolerated(0.2) benign(0) TCGA-YG-AA3N-01 X 12734222 12734222 C T FRMPD4 Silent p.G548G 0.59 TCGA-YG-AA3N-01 X 12905290 12905290 G A TLR7 Missense_Mutation p.D555N 0.60 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3N-01 X 129843258 129843258 C T ENOX2 Missense_Mutation p.R3K 0.07 tolerated_low_confidence(0.35) benign(0.364) TCGA-YG-AA3N-01 X 131573647 131573647 G A MBNL3 5'UTR 0.73 TCGA-YG-AA3N-01 X 132159815 132159815 C T USP26 Missense_Mutation p.E812K 0.75 tolerated(0.54) benign(0.022) TCGA-YG-AA3N-01 X 133700110 133700110 C T PLAC1 Nonsense_Mutation p.W201* 0.49 TCGA-YG-AA3N-01 X 133700111 133700111 C T PLAC1 Nonsense_Mutation p.W201* 0.47 TCGA-YG-AA3N-01 X 134714991 134714991 C T DDX26B Silent p.F800F 0.64 TCGA-YG-AA3N-01 X 135405289 135405289 G A GPR112 Silent p.R141R 0.77 TCGA-YG-AA3N-01 X 136113835 136113835 G T GPR101 5'Flank 0.71 TCGA-YG-AA3N-01 X 140996047 140996047 G A MAGEC1 Missense_Mutation p.A953T 0.66 deleterious(0.01) unknown(0) TCGA-YG-AA3N-01 X 142596871 142596871 G A SPANXN3 Nonsense_Mutation p.Q67* 0.60 TCGA-YG-AA3N-01 X 147084830 147084830 C T FMR1NB Silent p.F129F 0.45 TCGA-YG-AA3N-01 X 149014116 149014116 C T MAGEA8 3'UTR 0.45 TCGA-YG-AA3N-01 X 150348324 150348324 C T GPR50 Missense_Mutation p.S90F 0.53 tolerated(0.87) benign(0.025) TCGA-YG-AA3N-01 X 150832776 150832776 C T PASD1 Missense_Mutation p.P343S 0.44 tolerated(0.68) benign(0.233) TCGA-YG-AA3N-01 X 151092264 151092264 C T MAGEA4 Missense_Mutation p.S43F 0.78 tolerated(0.27) possibly_damaging(0.819) TCGA-YG-AA3N-01 X 151123995 151123995 G A GABRE Missense_Mutation p.R328C 0.76 deleterious(0.02) probably_damaging(0.996) TCGA-YG-AA3N-01 X 151130954 151130954 G A GABRE Silent p.I168I 0.67 TCGA-YG-AA3N-01 X 152482140 152482140 G A MAGEA1 Missense_Mutation p.R291C 0.67 deleterious(0.03) possibly_damaging(0.519) TCGA-YG-AA3N-01 X 153069702 153069702 G T PDZD4 Missense_Mutation p.N472K 0.42 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3N-01 X 153219717 153219717 G A HCFC1 Missense_Mutation p.P1378L 0.52 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YG-AA3N-01 X 18230692 18230692 G A BEND2 Missense_Mutation p.T162I 0.64 tolerated(0.52) benign(0.002) TCGA-YG-AA3N-01 X 19506957 19506957 G A MAP3K15 Missense_Mutation p.L164F 0.51 tolerated(0.31) benign(0.102) TCGA-YG-AA3N-01 X 20044031 20044031 C T MAP7D2 Silent p.T349T 0.66 TCGA-YG-AA3N-01 X 26157763 26157763 G A MAGEB18 Missense_Mutation p.E221K 0.60 tolerated(0.29) benign(0.19) TCGA-YG-AA3N-01 X 26212243 26212243 C T MAGEB6 Missense_Mutation p.P94S 0.60 deleterious(0.04) benign(0.132) TCGA-YG-AA3N-01 X 3002631 3002631 G A ARSF Missense_Mutation p.E252K 0.60 tolerated(0.16) benign(0.157) TCGA-YG-AA3N-01 X 3235774 3235774 G A MXRA5 Missense_Mutation p.S1983F 0.58 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3N-01 X 34150033 34150033 C T FAM47A Silent p.V121V 0.66 TCGA-YG-AA3N-01 X 34648488 34648488 G A TMEM47 Missense_Mutation p.S163L 0.48 tolerated(0.17) probably_damaging(0.988) TCGA-YG-AA3N-01 X 34962579 34962579 G A FAM47B Missense_Mutation p.G544E 0.35 tolerated(0.15) benign(0.009) TCGA-YG-AA3N-01 X 35971708 35971708 G A CXorf22 Splice_Site p.X349_splice 0.60 TCGA-YG-AA3N-01 X 37027687 37027687 C T FAM47C Missense_Mutation p.L402F 0.71 tolerated(0.05) possibly_damaging(0.45) TCGA-YG-AA3N-01 X 37029327 37029327 G A FAM47C Silent p.G948G 0.64 TCGA-YG-AA3N-01 X 38226640 38226640 G A OTC Nonsense_Mutation p.W58* 0.50 TCGA-YG-AA3N-01 X 43628558 43628558 C T MAOB Missense_Mutation p.R448Q 0.42 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3N-01 X 43628635 43628635 G A MAOB Silent p.Y422Y 0.71 TCGA-YG-AA3N-01 X 48125817 48125817 G A SSX1 Missense_Mutation p.E188K 0.59 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-YG-AA3N-01 X 49230825 49230825 G A GAGE2C Missense_Mutation p.E77K 0.28 probably_damaging(0.995) TCGA-YG-AA3N-01 X 50094716 50094716 G A CCNB3 3'UTR 0.44 TCGA-YG-AA3N-01 X 53113749 53113749 C T TSPYL2 Missense_Mutation p.S277L 0.73 deleterious(0) possibly_damaging(0.903) TCGA-YG-AA3N-01 X 5810918 5810918 G T NLGN4X Silent p.T797T 0.61 TCGA-YG-AA3N-01 X 63488868 63488868 C T MTMR8 Missense_Mutation p.G555E 0.70 tolerated(0.35) possibly_damaging(0.535) TCGA-YG-AA3N-01 X 64138953 64138953 G A ZC4H2 Missense_Mutation p.A177V 0.59 tolerated(0.31) benign(0.221) TCGA-YG-AA3N-01 X 66942718 66942718 G A AR Missense_Mutation p.M833I 0.71 deleterious(0.03) benign(0.336) TCGA-YG-AA3N-01 X 66943753 66943753 C T AR 3'UTR 0.47 TCGA-YG-AA3N-01 X 69561676 69561676 C T KIF4A Silent p.S387S 0.62 TCGA-YG-AA3N-01 X 72433233 72433233 G A NAP1L2 Missense_Mutation p.P366S 0.67 tolerated(0.19) probably_damaging(0.934) TCGA-YG-AA3N-01 X 73046400 73046400 G A XIST RNA 0.70 TCGA-YG-AA3N-01 X 73050952 73050952 G A XIST RNA 0.71 TCGA-YG-AA3N-01 X 73063855 73063855 G A XIST RNA 0.50 TCGA-YG-AA3N-01 X 73065043 73065043 G A XIST RNA 0.69 TCGA-YG-AA3N-01 X 73751219 73751219 G A SLC16A2 Missense_Mutation p.G484D 0.67 deleterious(0) probably_damaging(1) TCGA-YG-AA3N-01 X 77224434 77224434 C T PGAM4 Silent p.G234G 0.64 TCGA-YG-AA3N-01 X 77528472 77528472 G A CYSLTR1 Missense_Mutation p.H258Y 0.65 tolerated(0.13) benign(0.053) TCGA-YG-AA3N-01 X 77528884 77528884 G A CYSLTR1 Silent p.F120F 0.65 TCGA-YG-AA3N-01 X 84559405 84559405 G A POF1B Missense_Mutation p.H504Y 0.77 deleterious(0.04) possibly_damaging(0.854) TCGA-YG-AA3N-01 X 86869518 86869518 G A KLHL4 Silent p.R224R 0.44 TCGA-YG-AA3N-01 X 92928210 92928210 C A NAP1L3 Nonsense_Mutation p.E32* 0.50 TCGA-YG-AA3N-01 Y 24457062 24457062 G A RBMY2FP RNA 0.62 TCGA-YG-AA3O-06 10 114711273 114711273 G A TCF7L2 Silent p.K96K 0.58 TCGA-YG-AA3O-06 10 114711274 114711274 G A TCF7L2 Missense_Mutation p.G97R 0.58 deleterious(0.01) benign(0.444) TCGA-YG-AA3O-06 10 114925700 114925700 C T TCF7L2 Missense_Mutation p.P593L 0.73 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-YG-AA3O-06 10 118100346 118100346 T G CCDC172 Missense_Mutation p.M89R 0.64 tolerated(0.57) benign(0.002) TCGA-YG-AA3O-06 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.65 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 10 12708787 12708787 C T CAMK1D Missense_Mutation p.H93Y 0.21 tolerated(0.06) benign(0.008) TCGA-YG-AA3O-06 10 128908533 128908533 C T DOCK1 Silent p.I825I 0.41 TCGA-YG-AA3O-06 10 129901352 129901352 G A MKI67 Silent p.L2918L 0.51 TCGA-YG-AA3O-06 10 134664675 134664675 C T TTC40 Silent p.E1903E 0.68 TCGA-YG-AA3O-06 10 135340950 135340950 C T CYP2E1 Silent p.L17L 0.57 TCGA-YG-AA3O-06 10 15172180 15172180 G A NMT2 Missense_Mutation p.T284I 0.25 deleterious(0) possibly_damaging(0.667) TCGA-YG-AA3O-06 10 15639266 15639266 C T ITGA8 Missense_Mutation p.M717I 0.20 deleterious(0.03) benign(0.314) TCGA-YG-AA3O-06 10 1779316 1779316 C T ADARB2 Missense_Mutation p.G10E 0.27 tolerated_low_confidence(0.14) unknown(0) TCGA-YG-AA3O-06 10 20357117 20357117 G A PLXDC2 Missense_Mutation p.D164N 0.26 deleterious(0.03) possibly_damaging(0.477) TCGA-YG-AA3O-06 10 26417388 26417388 C T MYO3A Missense_Mutation p.S728F 0.18 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 10 28270426 28270426 G A ARMC4 Missense_Mutation p.S302L 0.46 deleterious(0.01) benign(0.242) TCGA-YG-AA3O-06 10 30318519 30318519 C T KIAA1462 Silent p.L186L 0.48 TCGA-YG-AA3O-06 10 34400202 34400202 G A PARD3 Silent p.A1322A 0.35 TCGA-YG-AA3O-06 10 37418902 37418902 C T ANKRD30A Silent p.V45V 0.16 TCGA-YG-AA3O-06 10 37418903 37418903 C T ANKRD30A Missense_Mutation p.L46F 0.16 tolerated(0.67) benign(0.214) TCGA-YG-AA3O-06 10 37508025 37508025 G A ANKRD30A Missense_Mutation p.E1073K 0.26 deleterious(0) possibly_damaging(0.636) TCGA-YG-AA3O-06 10 37520412 37520412 G A ANKRD30A 3'UTR 0.47 TCGA-YG-AA3O-06 10 38666967 38666967 G A HSD17B7P2 RNA 0.16 TCGA-YG-AA3O-06 10 45498873 45498873 C T ZNF22 Silent p.A19A 0.22 TCGA-YG-AA3O-06 10 45499062 45499062 C T ZNF22 Silent p.S82S 0.28 TCGA-YG-AA3O-06 10 46242093 46242093 C T FAM21C Nonsense_Mutation p.Q244* 0.58 TCGA-YG-AA3O-06 10 47087841 47087841 C T NPY4R Missense_Mutation p.P353L 0.10 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 10 47911581 47911581 G A FAM21B Missense_Mutation p.S353N 0.31 tolerated(0.07) benign(0.021) TCGA-YG-AA3O-06 10 49430370 49430370 T C FRMPD2 Missense_Mutation p.N481D 0.19 tolerated(0.99) benign(0.338) TCGA-YG-AA3O-06 10 49430371 49430371 G C FRMPD2 Silent p.G480G 0.18 TCGA-YG-AA3O-06 10 5042618 5042618 G A AKR1C2 Intron 0.50 TCGA-YG-AA3O-06 10 50902572 50902572 C T C10orf53 Intron 0.26 TCGA-YG-AA3O-06 10 51465727 51465727 C T AGAP7 Silent p.R243R 0.32 TCGA-YG-AA3O-06 10 5435728 5435728 G A TUBAL3 Missense_Mutation p.R365W 0.23 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-YG-AA3O-06 10 61413604 61413604 T G SLC16A9 Missense_Mutation p.S394R 0.29 deleterious(0) possibly_damaging(0.744) TCGA-YG-AA3O-06 10 61835198 61835198 G A ANK3 Missense_Mutation p.S1814F 0.20 probably_damaging(0.979) TCGA-YG-AA3O-06 10 61868744 61868744 C T ANK3 Missense_Mutation p.R1006K 0.43 probably_damaging(0.996) TCGA-YG-AA3O-06 10 61926409 61926409 G A ANK3 Missense_Mutation p.R852C 0.36 benign(0.033) TCGA-YG-AA3O-06 10 62038627 62038627 C T ANK3 Missense_Mutation p.G107R 0.26 probably_damaging(1) TCGA-YG-AA3O-06 10 62652716 62652716 G A RHOBTB1 Missense_Mutation p.P112S 0.20 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 10 69959304 69959304 T A MYPN Missense_Mutation p.N1155K 0.29 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3O-06 10 72360403 72360403 G A PRF1 Nonsense_Mutation p.Q86* 0.24 TCGA-YG-AA3O-06 10 72503339 72503339 G A ADAMTS14 Missense_Mutation p.D657N 0.21 deleterious(0) possibly_damaging(0.754) TCGA-YG-AA3O-06 10 73567281 73567281 G A CDH23 Missense_Mutation p.E533K 0.30 tolerated(0.33) benign(0.009) TCGA-YG-AA3O-06 10 75302595 75302595 G A USP54 Nonsense_Mutation p.Q180* 0.40 TCGA-YG-AA3O-06 10 7762899 7762899 T C ITIH2 Silent p.V237V 0.42 TCGA-YG-AA3O-06 10 8007451 8007451 G A TAF3 Missense_Mutation p.E660K 0.23 deleterious_low_confidence(0.01) benign(0.052) TCGA-YG-AA3O-06 10 8100361 8100361 G A GATA3 Nonsense_Mutation p.W112* 0.35 TCGA-YG-AA3O-06 10 85973008 85973008 G A CDHR1 Silent p.R648R 0.67 TCGA-YG-AA3O-06 10 88950241 88950241 T C FAM35A Missense_Mutation p.V770A 0.59 tolerated(0.27) benign(0.004) TCGA-YG-AA3O-06 10 96535165 96535165 G A CYP2C19 Missense_Mutation p.G117E 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-YG-AA3O-06 10 97393353 97393353 A G ALDH18A1 Silent p.N204N 0.79 TCGA-YG-AA3O-06 10 98105748 98105748 C T OPALIN Missense_Mutation p.E126K 0.60 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-YG-AA3O-06 10 98307684 98307684 T A TM9SF3 Missense_Mutation p.Y341F 0.55 tolerated(0.1) benign(0.246) TCGA-YG-AA3O-06 10 98708795 98708795 C T LCOR 5'UTR 0.58 TCGA-YG-AA3O-06 10 98806505 98806505 C T SLIT1 Missense_Mutation p.G587S 0.55 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 11 104866472 104866472 C T CASP5 Silent p.%3D 0.48 TCGA-YG-AA3O-06 11 1100999 1100999 G A MUC2 Silent p.G2466G 0.37 TCGA-YG-AA3O-06 11 1101000 1101000 G A MUC2 Missense_Mutation p.E2467K 0.37 unknown(0) TCGA-YG-AA3O-06 11 1102461 1102461 C T MUC2 Silent p.F2615F 0.50 TCGA-YG-AA3O-06 11 117985857 117985857 G A TMPRSS4 Silent p.K338K 0.57 TCGA-YG-AA3O-06 11 121008366 121008366 T G TECTA Missense_Mutation p.F1060V 0.47 tolerated(0.25) benign(0.009) TCGA-YG-AA3O-06 11 123513367 123513367 G A SCN3B Missense_Mutation p.R78W 0.50 deleterious(0.01) probably_damaging(0.912) TCGA-YG-AA3O-06 11 123810731 123810731 G A OR4D5 Missense_Mutation p.M136I 0.70 deleterious(0) possibly_damaging(0.885) TCGA-YG-AA3O-06 11 123811064 123811064 G A OR4D5 Silent p.V247V 0.58 TCGA-YG-AA3O-06 11 124253029 124253029 G A OR8B2 Missense_Mutation p.L71F 0.46 tolerated_low_confidence(0.27) benign(0.009) TCGA-YG-AA3O-06 11 124508448 124508450 TTG - SIAE In_Frame_Del p.N436del 0.64 TCGA-YG-AA3O-06 11 124946728 124946728 C T SLC37A2 Silent p.I45I 0.54 TCGA-YG-AA3O-06 11 125647264 125647264 G A PATE2 3'UTR 0.86 TCGA-YG-AA3O-06 11 128360407 128360407 T C ETS1 Silent p.L93L 0.73 TCGA-YG-AA3O-06 11 133794770 133794770 G A IGSF9B Silent p.A688A 0.68 TCGA-YG-AA3O-06 11 18017351 18017351 C T SERGEF Missense_Mutation p.R205K 0.38 tolerated(0.53) benign(0.001) TCGA-YG-AA3O-06 11 18028200 18028200 G A SERGEF Missense_Mutation p.S97F 0.40 tolerated(0.26) benign(0.039) TCGA-YG-AA3O-06 11 18159836 18159836 G A MRGPRX3 3'UTR 0.44 TCGA-YG-AA3O-06 11 18231732 18231732 G A RP11-113D6.10 3'UTR 0.32 TCGA-YG-AA3O-06 11 1955588 1955588 G A TNNT3 Silent p.E131E 0.23 TCGA-YG-AA3O-06 11 2482868 2482868 G A KCNQ1 Intron 0.55 TCGA-YG-AA3O-06 11 30255186 30255186 G A FSHB Missense_Mutation p.E77K 0.24 tolerated(0.07) possibly_damaging(0.827) TCGA-YG-AA3O-06 11 3038361 3038361 G A CARS Missense_Mutation p.A631V 0.24 deleterious(0) possibly_damaging(0.842) TCGA-YG-AA3O-06 11 30902766 30902766 G A DCDC1 Silent p.D1721D 0.24 TCGA-YG-AA3O-06 11 32676503 32676503 C T CCDC73 Missense_Mutation p.A221T 0.29 tolerated(1) benign(0.01) TCGA-YG-AA3O-06 11 33363133 33363133 G C HIPK3 Missense_Mutation p.V600L 0.33 tolerated(0.27) benign(0.111) TCGA-YG-AA3O-06 11 36614102 36614102 C T RAG2 3'UTR 0.37 TCGA-YG-AA3O-06 11 43284509 43284509 G A HNRNPKP3 RNA 0.31 TCGA-YG-AA3O-06 11 44296968 44296968 G A ALX4 Missense_Mutation p.T236I 0.34 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3O-06 11 4510137 4510137 C T OR52K1 Missense_Mutation p.P3S 0.41 tolerated(0.71) benign(0.003) TCGA-YG-AA3O-06 11 46625138 46625138 G A HARBI1 Missense_Mutation p.S331F 0.39 deleterious(0.04) benign(0.133) TCGA-YG-AA3O-06 11 46747498 46747498 C T F2 Missense_Mutation p.R217W 0.41 deleterious(0.04) possibly_damaging(0.849) TCGA-YG-AA3O-06 11 47357551 47357551 C T MYBPC3 Missense_Mutation p.E872K 0.31 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 11 4825161 4825161 G A OR52R1 Silent p.I150I 0.31 TCGA-YG-AA3O-06 11 48327867 48327867 C T OR4S1 Silent p.L31L 0.76 TCGA-YG-AA3O-06 11 48328536 48328536 C T OR4S1 Silent p.F254F 0.36 TCGA-YG-AA3O-06 11 48328614 48328614 G A OR4S1 Silent p.L280L 0.41 TCGA-YG-AA3O-06 11 4869859 4869859 G A OR51S1 Missense_Mutation p.R194C 0.35 deleterious(0) probably_damaging(0.965) TCGA-YG-AA3O-06 11 4903155 4903155 C T OR51T1 Missense_Mutation p.S36L 0.38 tolerated(0.18) benign(0.209) TCGA-YG-AA3O-06 11 4935991 4935991 G A OR51G2 Silent p.T301T 0.37 TCGA-YG-AA3O-06 11 49597756 49597756 C T RP11-707M1.1 RNA 0.35 TCGA-YG-AA3O-06 11 50003581 50003581 G A OR4C12 Missense_Mutation p.H153Y 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YG-AA3O-06 11 5080164 5080164 G A OR52E2 Missense_Mutation p.H232Y 0.41 tolerated(0.18) benign(0.01) TCGA-YG-AA3O-06 11 5475513 5475513 G A OR51I2 Silent p.G265G 0.33 TCGA-YG-AA3O-06 11 55136139 55136139 G A OR4A15 Silent p.G260G 0.68 TCGA-YG-AA3O-06 11 55541253 55541253 A G OR5D13 Missense_Mutation p.T114A 0.76 tolerated(0.27) benign(0.008) TCGA-YG-AA3O-06 11 5776913 5776913 G A OR52N4 Missense_Mutation p.D315N 0.45 tolerated(0.36) benign(0.002) TCGA-YG-AA3O-06 11 57995762 57995762 C T OR10Q1 Missense_Mutation p.D196N 0.65 tolerated(0.18) benign(0.311) TCGA-YG-AA3O-06 11 5862839 5862839 C T OR52E6 Missense_Mutation p.G97R 0.34 deleterious(0.04) possibly_damaging(0.526) TCGA-YG-AA3O-06 11 59481030 59481030 C T OR10V1 Missense_Mutation p.G97R 0.69 deleterious(0) probably_damaging(0.953) TCGA-YG-AA3O-06 11 5969115 5969115 A G OR56A3 Missense_Mutation p.N180S 0.32 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3O-06 11 6048278 6048278 G A OR56A1 Silent p.F219F 0.36 TCGA-YG-AA3O-06 11 60705349 60705349 C T SLC15A3 Silent p.K528K 0.81 TCGA-YG-AA3O-06 11 61646275 61646275 G A FADS3 Silent p.I189I 0.59 TCGA-YG-AA3O-06 11 62293653 62293653 G A AHNAK Missense_Mutation p.P2746S 0.66 probably_damaging(0.999) TCGA-YG-AA3O-06 11 6235657 6235657 G A FAM160A2 Silent p.R861R 0.24 TCGA-YG-AA3O-06 11 6261612 6261612 C T CNGA4 Silent p.F196F 0.43 TCGA-YG-AA3O-06 11 6290942 6290942 C A CCKBR Missense_Mutation p.F65L 0.36 deleterious(0) benign(0.383) TCGA-YG-AA3O-06 11 640419 640419 G A DRD4 Nonsense_Mutation p.W359* 0.37 TCGA-YG-AA3O-06 11 64572520 64572520 G A MEN1 Missense_Mutation p.R451C 0.64 deleterious(0) probably_damaging(0.98) TCGA-YG-AA3O-06 11 65347617 65347617 C T EHBP1L1 Silent p.P126P 0.69 TCGA-YG-AA3O-06 11 67190898 67190898 C T CARNS1 Missense_Mutation p.T560I 0.57 deleterious(0.01) probably_damaging(0.931) TCGA-YG-AA3O-06 11 67265653 67265653 G A PITPNM1 Missense_Mutation p.A542V 0.82 tolerated(1) benign(0.011) TCGA-YG-AA3O-06 11 67434401 67434401 C T ALDH3B2 Silent p.K2K 0.79 TCGA-YG-AA3O-06 11 70031710 70031710 G A ANO1 Missense_Mutation p.R868Q 0.59 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3O-06 11 76072025 76072025 C T PRKRIR Missense_Mutation p.R98K 0.23 tolerated(0.55) possibly_damaging(0.632) TCGA-YG-AA3O-06 11 76072059 76072059 C T PRKRIR Missense_Mutation p.D87N 0.26 deleterious(0.01) benign(0.424) TCGA-YG-AA3O-06 11 76873217 76873217 T A MYO7A Missense_Mutation p.F465L 0.48 deleterious(0.03) benign(0.009) TCGA-YG-AA3O-06 11 76888616 76888616 G A MYO7A Missense_Mutation p.E737K 0.52 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 11 7982463 7982463 G A NLRP10 Silent p.A232A 0.39 TCGA-YG-AA3O-06 11 83173072 83173072 C T DLG2 Missense_Mutation p.E932K 0.53 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3O-06 11 85707908 85707908 G A PICALM Missense_Mutation p.P407S 0.57 tolerated(0.65) benign(0.001) TCGA-YG-AA3O-06 11 92577460 92577460 G A FAT3 Missense_Mutation p.E3643K 0.66 benign(0.119) TCGA-YG-AA3O-06 11 92577713 92577713 G T FAT3 Missense_Mutation p.R3727I 0.66 possibly_damaging(0.866) TCGA-YG-AA3O-06 11 93778858 93778858 G A HEPHL1 Missense_Mutation p.E64K 0.67 tolerated(0.53) benign(0.005) TCGA-YG-AA3O-06 12 101295533 101295533 C T ANO4 5'UTR 0.32 TCGA-YG-AA3O-06 12 101472992 101472992 G T ANO4 Missense_Mutation p.W410L 0.30 deleterious(0) possibly_damaging(0.69) TCGA-YG-AA3O-06 12 101480556 101480556 G A ANO4 Missense_Mutation p.G517E 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-YG-AA3O-06 12 102045168 102045168 G A MYBPC1 Missense_Mutation p.G483E 0.29 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 12 10332177 10332177 G A TMEM52B 5'UTR 0.36 TCGA-YG-AA3O-06 12 104083653 104083653 C A STAB2 Silent p.A1025A 0.44 TCGA-YG-AA3O-06 12 108043045 108043045 C T BTBD11 Silent p.I995I 0.34 TCGA-YG-AA3O-06 12 108686614 108686614 G A CMKLR1 Silent p.F42F 0.36 TCGA-YG-AA3O-06 12 108986022 108986022 G A TMEM119 Silent p.G46G 0.24 TCGA-YG-AA3O-06 12 109605727 109605727 C T ACACB Silent p.A271A 0.31 TCGA-YG-AA3O-06 12 110467318 110467318 C T ANKRD13A Missense_Mutation p.P371L 0.30 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 12 111742102 111742102 C T CUX2 Missense_Mutation p.P281L 0.22 deleterious(0.01) benign(0.328) TCGA-YG-AA3O-06 12 112481562 112481562 G A NAA25 Missense_Mutation p.P706L 0.25 tolerated(0.06) benign(0.008) TCGA-YG-AA3O-06 12 112677766 112677766 G A HECTD4 Missense_Mutation p.T1529I 0.31 probably_damaging(0.976) TCGA-YG-AA3O-06 12 113442827 113442827 C T OAS2 Missense_Mutation p.S423F 0.48 tolerated(0.12) benign(0.151) TCGA-YG-AA3O-06 12 113442828 113442828 C T OAS2 Silent p.S423S 0.50 TCGA-YG-AA3O-06 12 11461387 11461387 C T PRB4 Missense_Mutation p.R177Q 0.32 tolerated_low_confidence(0.36) unknown(0) TCGA-YG-AA3O-06 12 116445408 116445408 G A MED13L Silent p.I682I 0.34 TCGA-YG-AA3O-06 12 117723927 117723927 G A NOS1 Silent p.I424I 0.31 TCGA-YG-AA3O-06 12 120741523 120741523 T A SIRT4 Silent p.L53L 0.38 TCGA-YG-AA3O-06 12 120882639 120882639 C G TRIAP1 3'UTR 0.34 TCGA-YG-AA3O-06 12 122396379 122396379 G A WDR66 Silent p.R644R 0.32 TCGA-YG-AA3O-06 12 123200412 123200412 G A HCAR3 Silent p.P291P 0.45 TCGA-YG-AA3O-06 12 123200413 123200413 G A HCAR3 Missense_Mutation p.P291L 0.45 deleterious(0) possibly_damaging(0.731) TCGA-YG-AA3O-06 12 130185072 130185072 A G TMEM132D Missense_Mutation p.I84T 0.53 tolerated(0.21) benign(0.025) TCGA-YG-AA3O-06 12 131498778 131498778 C T GPR133 Silent p.L456L 0.39 TCGA-YG-AA3O-06 12 14798249 14798249 C T GUCY2C Missense_Mutation p.E571K 0.54 tolerated(0.15) benign(0.395) TCGA-YG-AA3O-06 12 14836001 14836001 C T GUCY2C Missense_Mutation p.G196S 0.28 tolerated(0.49) benign(0.004) TCGA-YG-AA3O-06 12 1755245 1755245 C T WNT5B Missense_Mutation p.L303F 0.47 tolerated(0.36) benign(0.007) TCGA-YG-AA3O-06 12 18491360 18491360 G A PIK3C2G Missense_Mutation p.E425K 0.27 tolerated(0.8) benign(0.001) TCGA-YG-AA3O-06 12 18658234 18658234 G A PIK3C2G Silent p.R1013R 0.24 TCGA-YG-AA3O-06 12 18854485 18854485 C T PLCZ1 Missense_Mutation p.E323K 0.30 tolerated(0.12) benign(0.009) TCGA-YG-AA3O-06 12 18876418 18876418 C T PLCZ1 Missense_Mutation p.R65Q 0.39 tolerated(0.07) possibly_damaging(0.554) TCGA-YG-AA3O-06 12 1943909 1943909 G A LRTM2 3'UTR 0.46 TCGA-YG-AA3O-06 12 21471823 21471823 G A SLCO1A2 Missense_Mutation p.S32F 0.48 deleterious(0) possibly_damaging(0.824) TCGA-YG-AA3O-06 12 32134418 32134418 C T KIAA1551 Missense_Mutation p.P177S 0.47 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 12 32137943 32137943 T C KIAA1551 Missense_Mutation p.S1352P 0.40 deleterious(0.01) probably_damaging(0.974) TCGA-YG-AA3O-06 12 32974436 32974436 C T PKP2 Missense_Mutation p.E667K 0.35 deleterious(0) possibly_damaging(0.831) TCGA-YG-AA3O-06 12 3931100 3931100 G A PARP11 Missense_Mutation p.R163C 0.34 tolerated(0.05) benign(0.001) TCGA-YG-AA3O-06 12 39947805 39947805 G A ABCD2 Missense_Mutation p.P711L 0.32 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 12 416650 416650 G A KDM5A Silent p.L1300L 0.31 TCGA-YG-AA3O-06 12 48135263 48135263 C T RAPGEF3 Intron 0.38 TCGA-YG-AA3O-06 12 49168558 49168558 G A ADCY6 Silent p.S694S 0.41 TCGA-YG-AA3O-06 12 49218515 49218515 A T CACNB3 Silent p.L157L 0.29 TCGA-YG-AA3O-06 12 49438198 49438198 G A KMT2D Missense_Mutation p.P1691S 0.33 probably_damaging(0.998) TCGA-YG-AA3O-06 12 49442926 49442926 G A KMT2D Missense_Mutation p.R1328W 0.60 probably_damaging(0.997) TCGA-YG-AA3O-06 12 52710709 52710709 G A KRT83 Silent p.I283I 0.32 TCGA-YG-AA3O-06 12 52820622 52820622 C T KRT75 Missense_Mutation p.G466R 0.34 tolerated(0.07) probably_damaging(0.989) TCGA-YG-AA3O-06 12 52820623 52820623 C T KRT75 Silent p.E465E 0.33 TCGA-YG-AA3O-06 12 52966352 52966352 G A KRT74 Missense_Mutation p.L191F 0.30 tolerated(1) benign(0.011) TCGA-YG-AA3O-06 12 53069376 53069376 G A KRT1 Silent p.I512I 0.33 TCGA-YG-AA3O-06 12 53170622 53170622 G C KRT76 Missense_Mutation p.P152A 0.30 tolerated(0.06) unknown(0) TCGA-YG-AA3O-06 12 53346634 53346634 G A KRT18 3'UTR 0.42 TCGA-YG-AA3O-06 12 54576186 54576186 G A SMUG1 Silent p.F169F 0.37 TCGA-YG-AA3O-06 12 54686620 54686620 C T NFE2 Silent p.G220G 0.42 TCGA-YG-AA3O-06 12 54936440 54936440 G A NCKAP1L Missense_Mutation p.E1119K 0.33 tolerated(0.23) possibly_damaging(0.507) TCGA-YG-AA3O-06 12 55420486 55420486 G A NEUROD4 Missense_Mutation p.R88Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 12 55524129 55524129 T A OR9K2 Missense_Mutation p.F193I 0.43 deleterious(0) possibly_damaging(0.742) TCGA-YG-AA3O-06 12 55641861 55641861 G A OR6C74 Missense_Mutation p.E264K 0.36 deleterious_low_confidence(0.01) benign(0.171) TCGA-YG-AA3O-06 12 56231154 56231154 G A MMP19 Missense_Mutation p.S398F 0.35 deleterious(0) possibly_damaging(0.851) TCGA-YG-AA3O-06 12 56234925 56234925 G A MMP19 Missense_Mutation p.P90L 0.37 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3O-06 12 56490963 56490963 G A ERBB3 Silent p.R803R 0.37 TCGA-YG-AA3O-06 12 56755344 56755344 C T APOF Missense_Mutation p.D216N 0.27 tolerated(0.07) benign(0.258) TCGA-YG-AA3O-06 12 57554894 57554894 G A LRP1 Missense_Mutation p.R733Q 0.37 possibly_damaging(0.889) TCGA-YG-AA3O-06 12 58142265 58142265 G A CDK4 3'UTR 0.29 TCGA-YG-AA3O-06 12 6120816 6120816 C T VWF Missense_Mutation p.E1937K 0.33 deleterious(0.02) possibly_damaging(0.636) TCGA-YG-AA3O-06 12 6204505 6204505 G A VWF Intron 0.44 TCGA-YG-AA3O-06 12 62783751 62783751 C T USP15 Silent p.L609L 0.29 TCGA-YG-AA3O-06 12 6666402 6666402 G A NOP2 Silent p.S765S 0.40 TCGA-YG-AA3O-06 12 70953341 70953341 C T PTPRB Nonsense_Mutation p.W1499* 0.32 TCGA-YG-AA3O-06 12 71032985 71032985 A T PTPRR Silent p.L651L 0.31 TCGA-YG-AA3O-06 12 71977885 71977885 C T LGR5 Missense_Mutation p.P699S 0.33 deleterious(0.03) probably_damaging(0.951) TCGA-YG-AA3O-06 12 72955945 72955945 G A TRHDE Missense_Mutation p.D552N 0.28 tolerated(0.17) benign(0.1) TCGA-YG-AA3O-06 12 7520728 7520728 G A CD163L1 Missense_Mutation p.L1380F 0.56 tolerated(0.2) benign(0.18) TCGA-YG-AA3O-06 12 7522087 7522087 C T CD163L1 Missense_Mutation p.G1302D 0.45 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 12 7636167 7636167 C T CD163 Missense_Mutation p.D962N 0.31 deleterious(0.05) benign(0.134) TCGA-YG-AA3O-06 12 77423874 77423874 G A E2F7 Missense_Mutation p.L541F 0.28 tolerated(0.06) benign(0.023) TCGA-YG-AA3O-06 12 80633175 80633175 C T OTOGL Silent p.I327I 0.30 TCGA-YG-AA3O-06 12 80714316 80714316 G A OTOGL Missense_Mutation p.R1297K 0.33 tolerated(0.09) benign(0.004) TCGA-YG-AA3O-06 12 81537014 81537014 G A ACSS3 Silent p.T303T 0.47 TCGA-YG-AA3O-06 12 81545645 81545645 G A ACSS3 Missense_Mutation p.G315E 0.38 deleterious(0) probably_damaging(0.987) TCGA-YG-AA3O-06 12 81688619 81688619 G A PPFIA2 Nonsense_Mutation p.R974* 0.44 TCGA-YG-AA3O-06 12 8629976 8629976 G A CLEC6A Nonsense_Mutation p.W182* 0.39 TCGA-YG-AA3O-06 12 88373975 88373975 T A C12orf50 3'UTR 0.35 TCGA-YG-AA3O-06 12 8990973 8990973 C T A2ML1 Silent p.A299A 0.37 TCGA-YG-AA3O-06 12 9085295 9085295 C T PHC1 Silent p.L414L 0.36 TCGA-YG-AA3O-06 12 91358018 91358018 C T EPYC Missense_Mutation p.R295Q 0.37 deleterious(0) possibly_damaging(0.73) TCGA-YG-AA3O-06 12 91371925 91371925 C T EPYC Missense_Mutation p.D94N 0.26 tolerated(0.13) possibly_damaging(0.76) TCGA-YG-AA3O-06 12 9231927 9231927 C T A2M Missense_Mutation p.G1011D 0.34 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 12 94806218 94806218 G A CCDC41 Missense_Mutation p.P17S 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-YG-AA3O-06 12 96348692 96348692 T G AMDHD1 Missense_Mutation p.L83W 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-YG-AA3O-06 12 97051669 97051669 G A C12orf55 Missense_Mutation p.D1704N 0.35 tolerated(0.76) benign(0.35) TCGA-YG-AA3O-06 12 97328854 97328854 C T NEDD1 Missense_Mutation p.P204L 0.33 tolerated(0.1) benign(0.419) TCGA-YG-AA3O-06 12 97957688 97957688 C T MIR135A2 RNA 0.39 TCGA-YG-AA3O-06 12 99038496 99038496 A G IKBIP 5'UTR 0.29 TCGA-YG-AA3O-06 12 99080553 99080553 C T APAF1 Nonsense_Mutation p.R736* 0.30 TCGA-YG-AA3O-06 13 100523245 100523245 C T CLYBL Missense_Mutation p.P286S 0.36 deleterious(0.03) possibly_damaging(0.74) TCGA-YG-AA3O-06 13 100637938 100637938 G A ZIC2 3'UTR 0.47 TCGA-YG-AA3O-06 13 100637939 100637939 G A ZIC2 3'UTR 0.47 TCGA-YG-AA3O-06 13 109540774 109540774 C T MYO16 Silent p.L514L 0.41 TCGA-YG-AA3O-06 13 111142104 111142104 G A COL4A2 Silent p.K1106K 0.43 TCGA-YG-AA3O-06 13 113795358 113795358 C T F10 Missense_Mutation p.P166S 0.16 tolerated(1) benign(0.004) TCGA-YG-AA3O-06 13 20224169 20224169 G A MPHOSPH8 Missense_Mutation p.D449N 0.21 deleterious_low_confidence(0.02) benign(0.139) TCGA-YG-AA3O-06 13 24471035 24471035 G A C1QTNF9B Missense_Mutation p.P31S 0.19 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3O-06 13 24890232 24890232 C T C1QTNF9 Missense_Mutation p.P31S 0.31 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 13 25362126 25362126 G A RNF17 Silent p.R204R 0.19 TCGA-YG-AA3O-06 13 25373637 25373637 C T RNF17 Missense_Mutation p.P502S 0.09 tolerated(0.07) possibly_damaging(0.465) TCGA-YG-AA3O-06 13 25373638 25373638 C T RNF17 Missense_Mutation p.P502L 0.11 deleterious(0.04) benign(0.007) TCGA-YG-AA3O-06 13 26116160 26116160 G A ATP8A2 Missense_Mutation p.G252E 0.09 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 13 28155859 28155859 C T LNX2 5'UTR 0.48 TCGA-YG-AA3O-06 13 33347398 33347398 G A PDS5B Missense_Mutation p.G1415D 0.18 tolerated_low_confidence(0.12) benign(0.025) TCGA-YG-AA3O-06 13 33638301 33638301 A T KL Missense_Mutation p.K1006I 0.40 deleterious(0.04) possibly_damaging(0.653) TCGA-YG-AA3O-06 13 33692217 33692217 G A STARD13 Missense_Mutation p.L756F 0.40 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3O-06 13 33703472 33703472 C T STARD13 Missense_Mutation p.A448T 0.38 tolerated(0.27) benign(0.014) TCGA-YG-AA3O-06 13 35756556 35756556 G A NBEA Silent p.L1574L 0.25 TCGA-YG-AA3O-06 13 38211478 38211478 C A TRPC4 Missense_Mutation p.K837N 0.45 tolerated_low_confidence(0.06) benign(0.013) TCGA-YG-AA3O-06 13 41134879 41134879 G A FOXO1 Missense_Mutation p.P250L 0.17 tolerated(0.06) possibly_damaging(0.683) TCGA-YG-AA3O-06 13 41134880 41134880 G A FOXO1 Missense_Mutation p.P250S 0.19 deleterious(0) probably_damaging(0.985) TCGA-YG-AA3O-06 13 41814411 41814411 G A MTRF1 Missense_Mutation p.P286S 0.38 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 13 52951801 52951801 C T THSD1 Silent p.K768K 0.27 TCGA-YG-AA3O-06 13 58209119 58209119 G A PCDH17 Silent p.V813V 0.36 TCGA-YG-AA3O-06 13 75936457 75936457 G A TBC1D4 Missense_Mutation p.S262F 0.46 tolerated(0.11) benign(0.238) TCGA-YG-AA3O-06 13 78320841 78320841 G A SLAIN1 Missense_Mutation p.G206E 0.33 deleterious(0.01) unknown(0) TCGA-YG-AA3O-06 13 88328907 88328907 G A SLITRK5 Missense_Mutation p.A422T 0.48 tolerated(0.83) benign(0.002) TCGA-YG-AA3O-06 13 94482787 94482787 C T GPC6 Nonsense_Mutation p.R234* 0.22 TCGA-YG-AA3O-06 14 100377902 100377902 C T EML1 Missense_Mutation p.R514C 0.35 deleterious(0.02) benign(0.001) TCGA-YG-AA3O-06 14 100793567 100793567 G A SLC25A47 Missense_Mutation p.V63M 0.46 deleterious(0.02) probably_damaging(0.93) TCGA-YG-AA3O-06 14 101492154 101492154 C T MIR323A RNA 0.46 TCGA-YG-AA3O-06 14 101520651 101520651 G A MIR382 RNA 0.07 TCGA-YG-AA3O-06 14 101530840 101530840 G A MIR541 RNA 0.45 TCGA-YG-AA3O-06 14 103574828 103574828 T C EXOC3L4 Silent p.T650T 0.19 TCGA-YG-AA3O-06 14 105352895 105352895 C T CEP170B Silent p.P773P 0.42 TCGA-YG-AA3O-06 14 105408872 105408872 G A AHNAK2 Missense_Mutation p.P4306S 0.47 probably_damaging(0.998) TCGA-YG-AA3O-06 14 106452932 106452932 C T IGHV1-2 Silent p.V30V 0.42 TCGA-YG-AA3O-06 14 106622126 106622126 G A IGHV3-16 Missense_Mutation p.S40F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.705) TCGA-YG-AA3O-06 14 107131165 107131165 G A IGHV3-66 Silent p.S72S 0.42 TCGA-YG-AA3O-06 14 20215839 20215839 G A OR4Q3 Missense_Mutation p.D85N 0.21 deleterious(0.04) possibly_damaging(0.526) TCGA-YG-AA3O-06 14 20249212 20249212 C T OR4M1 Missense_Mutation p.S244F 0.47 deleterious(0) benign(0.427) TCGA-YG-AA3O-06 14 20345158 20345158 C T OR4K2 Silent p.F244F 0.24 TCGA-YG-AA3O-06 14 20388965 20388965 C T OR4K5 Missense_Mutation p.S67F 0.32 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 14 20692503 20692503 C T OR11H6 Missense_Mutation p.S212F 0.37 tolerated(0.12) benign(0.008) TCGA-YG-AA3O-06 14 22280038 22280038 G A TRAV9-1 Missense_Mutation p.G76E 0.25 tolerated(0.41) benign(0.016) TCGA-YG-AA3O-06 14 22309451 22309451 G A TRAV12-1 Silent p.V9V 0.30 TCGA-YG-AA3O-06 14 22315112 22315112 G A TRAV8-2 Missense_Mutation p.G17E 0.40 tolerated(0.15) benign(0.063) TCGA-YG-AA3O-06 14 22321138 22321138 C T TRAV8-3 Missense_Mutation p.S99F 0.26 deleterious(0.04) possibly_damaging(0.892) TCGA-YG-AA3O-06 14 22409772 22409772 G A TRAV9-2 Missense_Mutation p.E88K 0.52 tolerated(0.62) benign(0.017) TCGA-YG-AA3O-06 14 22459119 22459119 C T TRAV16 Silent p.L91L 0.50 TCGA-YG-AA3O-06 14 23392336 23392336 G A PRMT5 Missense_Mutation p.S470F 0.62 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 14 23745463 23745463 G A HOMEZ Missense_Mutation p.P325L 0.28 deleterious(0) benign(0.197) TCGA-YG-AA3O-06 14 23902365 23902365 G A MYH7 Silent p.A91A 0.40 TCGA-YG-AA3O-06 14 23938908 23938908 G A NGDN 5'UTR 0.18 TCGA-YG-AA3O-06 14 24538045 24538045 C T LRRC16B Silent p.P1284P 0.38 TCGA-YG-AA3O-06 14 24648926 24648926 T C REC8 Missense_Mutation p.V481A 0.14 tolerated(0.19) probably_damaging(0.932) TCGA-YG-AA3O-06 14 39716391 39716391 G A MIA2 Missense_Mutation p.E205K 0.18 tolerated(0.39) benign(0.076) TCGA-YG-AA3O-06 14 45603673 45603673 C T FKBP3 5'UTR 0.32 TCGA-YG-AA3O-06 14 51054756 51054756 C T ATL1 Missense_Mutation p.S81L 0.26 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 14 58669599 58669599 C T ACTR10 Missense_Mutation p.P35L 0.52 deleterious(0) probably_damaging(0.943) TCGA-YG-AA3O-06 14 60976439 60976439 G A SIX6 Missense_Mutation p.G108E 0.35 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 14 63860579 63860579 G A PPP2R5E Missense_Mutation p.P270S 0.41 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 14 64724127 64724127 C T ESR2 Intron 0.41 TCGA-YG-AA3O-06 14 65266482 65266482 G A SPTB Silent p.T349T 0.22 TCGA-YG-AA3O-06 14 65266483 65266483 G A SPTB Missense_Mutation p.T349I 0.21 deleterious(0.04) probably_damaging(1) TCGA-YG-AA3O-06 14 68193808 68193808 G A RDH12 Missense_Mutation p.D187N 0.25 tolerated(0.09) benign(0.098) TCGA-YG-AA3O-06 14 70419006 70419006 G A SMOC1 Missense_Mutation p.R84Q 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-YG-AA3O-06 14 73733300 73733300 G T PAPLN Missense_Mutation p.D1092Y 0.50 deleterious(0.01) probably_damaging(0.917) TCGA-YG-AA3O-06 14 74433688 74433688 C T ENTPD5 Silent p.T410T 0.39 TCGA-YG-AA3O-06 14 74539255 74539255 G A ALDH6A1 Silent p.I57I 0.48 TCGA-YG-AA3O-06 14 74755462 74755462 G A ABCD4 Missense_Mutation p.A488V 0.33 tolerated(0.6) benign(0.005) TCGA-YG-AA3O-06 14 76012976 76012976 C T BATF Missense_Mutation p.H114Y 0.53 tolerated_low_confidence(0.07) possibly_damaging(0.622) TCGA-YG-AA3O-06 14 76525572 76525572 C T IFT43 Intron 0.33 TCGA-YG-AA3O-06 14 81606081 81606081 G A TSHR Missense_Mutation p.E251K 0.24 tolerated(1) benign(0.04) TCGA-YG-AA3O-06 14 86089480 86089480 T A FLRT2 Missense_Mutation p.F541Y 0.21 deleterious(0) possibly_damaging(0.468) TCGA-YG-AA3O-06 14 91007854 91007854 G A TTC7B Missense_Mutation p.A797V 0.51 tolerated(0.25) benign(0.011) TCGA-YG-AA3O-06 14 91883161 91883161 C A CCDC88C Nonsense_Mutation p.G28* 0.36 TCGA-YG-AA3O-06 14 92054395 92054395 C T CATSPERB Missense_Mutation p.R995K 0.38 tolerated(1) benign(0) TCGA-YG-AA3O-06 14 92126191 92126191 C T CATSPERB Silent p.S474S 0.48 TCGA-YG-AA3O-06 14 93730311 93730311 G A BTBD7 Silent p.I397I 0.18 TCGA-YG-AA3O-06 14 94088323 94088323 A T UNC79 Missense_Mutation p.R1405W 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YG-AA3O-06 14 94545479 94545479 G A DDX24 Missense_Mutation p.L204F 0.24 deleterious(0) probably_damaging(0.93) TCGA-YG-AA3O-06 15 101550776 101550776 G A LRRK1 Missense_Mutation p.E371K 0.47 deleterious(0.04) benign(0.15) TCGA-YG-AA3O-06 15 102346198 102346198 C T OR4F6 Silent p.I92I 0.27 TCGA-YG-AA3O-06 15 20710721 20710721 C T HERC2P3 RNA 0.26 TCGA-YG-AA3O-06 15 22369161 22369161 G A OR4M2 Missense_Mutation p.E196K 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-YG-AA3O-06 15 23441121 23441121 C T AC100757.1 5'Flank 0.21 TCGA-YG-AA3O-06 15 25334911 25334911 C T SNORD116-23 5'Flank 0.29 TCGA-YG-AA3O-06 15 25339091 25339091 T A SNORD116-25 5'Flank 0.32 TCGA-YG-AA3O-06 15 25430646 25430646 C T SNORD115-10 5'Flank 0.26 TCGA-YG-AA3O-06 15 25477346 25477346 G A SNORD115-33 3'Flank 0.18 TCGA-YG-AA3O-06 15 25477347 25477347 G A SNORD115-33 3'Flank 0.14 TCGA-YG-AA3O-06 15 26793153 26793153 C T GABRB3 Silent p.R403R 0.33 TCGA-YG-AA3O-06 15 27777926 27777926 C T GABRG3 Missense_Mutation p.H435Y 0.17 tolerated(0.63) probably_damaging(0.998) TCGA-YG-AA3O-06 15 32460152 32460152 C T CHRNA7 Silent p.I363I 0.23 TCGA-YG-AA3O-06 15 33926849 33926849 G A RYR3 Silent p.K1030K 0.43 TCGA-YG-AA3O-06 15 39884983 39884983 C T THBS1 Missense_Mutation p.P916L 0.24 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 15 41146120 41146120 C T SPINT1 Silent p.F318F 0.43 TCGA-YG-AA3O-06 15 41146121 41146121 C T SPINT1 Missense_Mutation p.P319S 0.42 tolerated(0.13) benign(0.003) TCGA-YG-AA3O-06 15 42106809 42106809 C T MAPKBP1 Missense_Mutation p.P354S 0.42 deleterious(0.04) benign(0.017) TCGA-YG-AA3O-06 15 42701985 42701985 G A CAPN3 Missense_Mutation p.D665N 0.43 deleterious(0.01) benign(0.167) TCGA-YG-AA3O-06 15 45249110 45249110 G A C15orf43 Silent p.T27T 0.36 TCGA-YG-AA3O-06 15 48063774 48063774 C T SEMA6D Missense_Mutation p.T1005I 0.32 tolerated(0.21) benign(0.017) TCGA-YG-AA3O-06 15 51250828 51250828 C T AP4E1 Missense_Mutation p.S563F 0.45 deleterious(0.01) benign(0.252) TCGA-YG-AA3O-06 15 51696627 51696627 C T GLDN Silent p.G444G 0.33 TCGA-YG-AA3O-06 15 51696629 51696629 C T GLDN Missense_Mutation p.S445L 0.33 deleterious(0.04) benign(0.305) TCGA-YG-AA3O-06 15 52442041 52442041 T C GNB5 Intron 0.45 TCGA-YG-AA3O-06 15 55647592 55647592 A C PIGB Missense_Mutation p.K543Q 0.26 deleterious(0.01) benign(0.051) TCGA-YG-AA3O-06 15 57924701 57924701 G A GCOM1 Missense_Mutation p.E250K 0.55 deleterious(0.02) benign(0.111) TCGA-YG-AA3O-06 15 64429891 64429891 C T SNX1 Intron 0.38 TCGA-YG-AA3O-06 15 65114502 65114502 G A PIF1 Silent p.A260A 0.36 TCGA-YG-AA3O-06 15 65219159 65219159 C T ANKDD1A Silent p.F177F 0.46 TCGA-YG-AA3O-06 15 66618248 66618248 C T DIS3L Nonsense_Mutation p.R583* 0.45 TCGA-YG-AA3O-06 15 68657136 68657136 C T ITGA11 Missense_Mutation p.G89E 0.44 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 15 71128634 71128634 C T LARP6 Silent p.K137K 0.56 TCGA-YG-AA3O-06 15 72142483 72142483 G A MYO9A Nonsense_Mutation p.R2203* 0.49 TCGA-YG-AA3O-06 15 74178893 74178893 G A TBC1D21 Nonsense_Mutation p.W239* 0.36 TCGA-YG-AA3O-06 15 74364615 74364615 C T GOLGA6A Missense_Mutation p.E513K 0.19 deleterious(0.02) benign(0.287) TCGA-YG-AA3O-06 15 74425238 74425238 G A ISLR2 Missense_Mutation p.G48E 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3O-06 15 76191879 76191879 C T UBE2Q2 3'UTR 0.38 TCGA-YG-AA3O-06 15 79051803 79051803 C T ADAMTS7 Missense_Mutation p.G1674D 0.50 deleterious(0.03) benign(0.33) TCGA-YG-AA3O-06 15 83345366 83345366 G A AP3B2 Silent p.I504I 0.30 TCGA-YG-AA3O-06 15 85164689 85164689 C T ZSCAN2 Silent p.S421S 0.23 TCGA-YG-AA3O-06 15 85438211 85438211 C T SLC28A1 Silent p.F106F 0.32 TCGA-YG-AA3O-06 15 89400461 89400461 C T ACAN Missense_Mutation p.P1549S 0.20 tolerated(0.14) probably_damaging(0.98) TCGA-YG-AA3O-06 15 89403606 89403606 G A ACAN Silent p.K2294K 0.19 TCGA-YG-AA3O-06 15 89753394 89753394 G A RLBP1 3'UTR 0.29 TCGA-YG-AA3O-06 15 89760484 89760484 C T RLBP1 Silent p.Q71Q 0.32 TCGA-YG-AA3O-06 15 90030147 90030147 C T RHCG Missense_Mutation p.G85D 0.38 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3O-06 15 90328707 90328707 T C ANPEP Missense_Mutation p.E926G 0.29 tolerated(0.36) benign(0.014) TCGA-YG-AA3O-06 15 90335479 90335479 C T ANPEP Missense_Mutation p.E814K 0.23 tolerated(0.5) benign(0.021) TCGA-YG-AA3O-06 16 11001808 11001808 G A CIITA Missense_Mutation p.G820E 0.45 tolerated(0.83) benign(0.15) TCGA-YG-AA3O-06 16 11362757 11362757 C T TNP2 Silent p.R121R 0.26 TCGA-YG-AA3O-06 16 1248688 1248688 C T CACNA1H Silent p.F239F 0.40 TCGA-YG-AA3O-06 16 1307014 1307014 C T TPSD1 Silent p.P157P 0.33 TCGA-YG-AA3O-06 16 15224539 15224539 G A RP11-1186N24.5 RNA 0.33 TCGA-YG-AA3O-06 16 16349646 16349646 C T NOMO3 Missense_Mutation p.P345S 0.29 tolerated(0.63) benign(0.007) TCGA-YG-AA3O-06 16 19883936 19883936 G A GPRC5B Silent p.L78L 0.30 TCGA-YG-AA3O-06 16 19883937 19883937 G A GPRC5B Silent p.L77L 0.28 TCGA-YG-AA3O-06 16 20328584 20328584 A C GP2 Missense_Mutation p.L459R 0.33 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 16 20348709 20348709 A T UMOD Missense_Mutation p.F548L 0.38 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 16 20492239 20492239 G A ACSM2A Missense_Mutation p.G502E 0.46 deleterious(0) benign(0.333) TCGA-YG-AA3O-06 16 20554263 20554263 G A ACSM2B Silent p.I494I 0.38 TCGA-YG-AA3O-06 16 20873830 20873830 G A DCUN1D3 Missense_Mutation p.P11S 0.32 tolerated(0.18) possibly_damaging(0.761) TCGA-YG-AA3O-06 16 21063074 21063074 G A DNAH3 Silent p.I1385I 0.36 TCGA-YG-AA3O-06 16 21654918 21654918 G A IGSF6 Missense_Mutation p.S179L 0.31 deleterious(0.01) benign(0.319) TCGA-YG-AA3O-06 16 21693086 21693086 C T OTOA Silent p.S69S 0.43 TCGA-YG-AA3O-06 16 22563767 22563767 C T RP11-368J21.3 RNA 0.18 TCGA-YG-AA3O-06 16 23208669 23208669 G A SCNN1G Missense_Mutation p.R333Q 0.39 tolerated(0.44) benign(0.009) TCGA-YG-AA3O-06 16 23716403 23716403 C T ERN2 Missense_Mutation p.V267M 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-YG-AA3O-06 16 24921675 24921675 G A SLC5A11 Missense_Mutation p.E567K 0.30 tolerated(0.1) benign(0.003) TCGA-YG-AA3O-06 16 24942617 24942617 G A ARHGAP17 Missense_Mutation p.P668L 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-YG-AA3O-06 16 28877731 28877731 C T SH2B1 Silent p.L106L 0.33 TCGA-YG-AA3O-06 16 30005617 30005617 C T HIRIP3 Silent p.K283K 0.35 TCGA-YG-AA3O-06 16 30012285 30012285 C T INO80E Missense_Mutation p.P107L 0.41 deleterious(0.05) probably_damaging(0.996) TCGA-YG-AA3O-06 16 31089266 31089266 C T ZNF646 Missense_Mutation p.P541S 0.46 tolerated(0.54) benign(0.001) TCGA-YG-AA3O-06 16 32264840 32264840 G A TP53TG3D Missense_Mutation p.G56R 0.18 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-YG-AA3O-06 16 3740953 3740953 G A TRAP1 Missense_Mutation p.A41V 0.35 tolerated(0.89) benign(0.001) TCGA-YG-AA3O-06 16 57945711 57945711 G A CNGB1 Missense_Mutation p.S813L 0.63 deleterious(0) possibly_damaging(0.849) TCGA-YG-AA3O-06 16 61935368 61935368 C T CDH8 Missense_Mutation p.D88N 0.47 tolerated(0.18) benign(0.442) TCGA-YG-AA3O-06 16 66997771 66997771 C G CES3 Missense_Mutation p.L165V 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3O-06 16 67040657 67040657 T A CES4A Intron 0.57 TCGA-YG-AA3O-06 16 70165249 70165249 C T PDPR Silent p.I258I 0.36 TCGA-YG-AA3O-06 16 70688520 70688520 T A IL34 Silent p.T36T 0.63 TCGA-YG-AA3O-06 16 70884464 70884464 A T HYDIN Missense_Mutation p.L4180I 0.16 possibly_damaging(0.801) TCGA-YG-AA3O-06 16 71218869 71218869 C T HYDIN Missense_Mutation p.E54K 0.60 probably_damaging(0.953) TCGA-YG-AA3O-06 16 744647 744647 G A FBXL16 Silent p.L426L 0.29 TCGA-YG-AA3O-06 16 76483646 76483646 C T CNTNAP4 Intron 0.40 TCGA-YG-AA3O-06 16 78062066 78062066 G A CLEC3A Missense_Mutation p.E69K 0.65 deleterious(0.02) possibly_damaging(0.751) TCGA-YG-AA3O-06 16 78143687 78143687 G A WWOX Missense_Mutation p.G62E 0.53 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 16 81219191 81219191 G A PKD1L2 5'Flank 0.12 TCGA-YG-AA3O-06 16 81219192 81219192 G A PKD1L2 5'Flank 0.13 TCGA-YG-AA3O-06 16 81279186 81279186 C T BCMO1 Silent p.L57L 0.54 TCGA-YG-AA3O-06 16 85688038 85688038 C T GSE1 Missense_Mutation p.S194F 0.43 deleterious(0.03) unknown(0) TCGA-YG-AA3O-06 16 85688039 85688039 C A GSE1 Silent p.S194S 0.42 TCGA-YG-AA3O-06 16 8870281 8870281 G A ABAT Silent p.R401R 0.39 TCGA-YG-AA3O-06 16 9857436 9857436 C T GRIN2A Missense_Mutation p.G1322E 0.32 tolerated(0.37) benign(0.005) TCGA-YG-AA3O-06 16 9943693 9943693 G A GRIN2A Silent p.F416F 0.30 TCGA-YG-AA3O-06 17 10322007 10322007 G A MYH8 Missense_Mutation p.H156Y 0.63 deleterious(0.01) probably_damaging(0.965) TCGA-YG-AA3O-06 17 10350390 10350390 C T MYH4 Silent p.R1703R 0.67 TCGA-YG-AA3O-06 17 10401134 10401134 C T MYH1 Missense_Mutation p.E1428K 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3O-06 17 10451112 10451112 C T MYH2 Silent p.E42E 0.56 TCGA-YG-AA3O-06 17 11593319 11593319 G A DNAH9 Missense_Mutation p.G1394S 0.45 benign(0.167) TCGA-YG-AA3O-06 17 12666928 12666928 T A MYOCD Missense_Mutation p.N976K 0.24 deleterious(0) possibly_damaging(0.575) TCGA-YG-AA3O-06 17 16875341 16875341 G A TNFRSF13B Nonsense_Mutation p.Q17* 0.30 TCGA-YG-AA3O-06 17 17696632 17696632 C T RAI1 Missense_Mutation p.P124S 0.38 tolerated_low_confidence(0.12) probably_damaging(0.987) TCGA-YG-AA3O-06 17 18827235 18827235 C T PRPSAP2 Missense_Mutation p.P248S 0.44 tolerated(0.41) benign(0.022) TCGA-YG-AA3O-06 17 19186471 19186471 C T EPN2 Silent p.I13I 0.27 TCGA-YG-AA3O-06 17 25950295 25950295 G A KSR1 3'UTR 0.46 TCGA-YG-AA3O-06 17 26823549 26823549 G A SLC13A2 Missense_Mutation p.A567T 0.47 deleterious(0) probably_damaging(0.973) TCGA-YG-AA3O-06 17 27414025 27414025 G A MYO18A Missense_Mutation p.R1881W 0.55 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 27591499 27591499 C T NUFIP2 3'UTR 0.28 TCGA-YG-AA3O-06 17 28548974 28548974 C T SLC6A4 Translation_Start_Site p.M1? 0.19 tolerated_low_confidence(0.09) benign(0.01) TCGA-YG-AA3O-06 17 28886731 28886731 C T TBC1D29 5'UTR 0.43 TCGA-YG-AA3O-06 17 29226383 29226383 C T TEFM Missense_Mutation p.G296E 0.17 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 30677133 30677133 C T ZNF207 5'Flank 0.40 TCGA-YG-AA3O-06 17 33513495 33513495 G A UNC45B Missense_Mutation p.E905K 0.24 tolerated(0.53) benign(0.001) TCGA-YG-AA3O-06 17 36065043 36065043 C T HNF1B Missense_Mutation p.G407E 0.52 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 36499518 36499518 G A GPR179 Missense_Mutation p.P52L 0.21 deleterious(0.02) probably_damaging(0.911) TCGA-YG-AA3O-06 17 37119242 37119242 G A FBXO47 Missense_Mutation p.P13S 0.27 deleterious(0.01) possibly_damaging(0.859) TCGA-YG-AA3O-06 17 38028680 38028680 A T ZPBP2 Missense_Mutation p.K188N 0.49 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 17 38133339 38133339 C T GSDMA 3'UTR 0.19 TCGA-YG-AA3O-06 17 3854021 3854021 G A ATP2A3 Silent p.S170S 0.19 TCGA-YG-AA3O-06 17 38911335 38911335 G A KRT25 Silent p.P63P 0.50 TCGA-YG-AA3O-06 17 39135141 39135141 C T KRT40 Missense_Mutation p.E371K 0.23 deleterious(0) benign(0.136) TCGA-YG-AA3O-06 17 39670366 39670366 G A KRT15 Missense_Mutation p.S427L 0.47 tolerated(0.34) benign(0) TCGA-YG-AA3O-06 17 39767645 39767645 G A KRT16 Silent p.I241I 0.46 TCGA-YG-AA3O-06 17 39768655 39768655 C T KRT16 Missense_Mutation p.G96S 0.27 tolerated(0.3) unknown(0) TCGA-YG-AA3O-06 17 41738744 41738744 C T MEOX1 Silent p.A53A 0.45 TCGA-YG-AA3O-06 17 42457795 42457795 C T ITGA2B Silent p.V501V 0.46 TCGA-YG-AA3O-06 17 42824480 42824480 G A DBF4B Missense_Mutation p.R287Q 0.39 tolerated(0.4) benign(0.019) TCGA-YG-AA3O-06 17 43922471 43922471 G A SPPL2C Missense_Mutation p.A67T 0.25 tolerated(1) benign(0.016) TCGA-YG-AA3O-06 17 43923453 43923453 C T SPPL2C Missense_Mutation p.P394L 0.22 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 17 45362028 45362028 C T ITGB3 Missense_Mutation p.S194F 0.43 tolerated(0.06) benign(0.084) TCGA-YG-AA3O-06 17 4623868 4623868 C T ARRB2 Intron 0.30 TCGA-YG-AA3O-06 17 46607885 46607885 C T HOXB1 Missense_Mutation p.G128R 0.24 tolerated(0.12) benign(0.424) TCGA-YG-AA3O-06 17 47390165 47390165 G A ZNF652 Missense_Mutation p.H315Y 0.18 tolerated(0.05) probably_damaging(0.979) TCGA-YG-AA3O-06 17 48141459 48141459 C T ITGA3 Silent p.P75P 0.35 TCGA-YG-AA3O-06 17 48148280 48148280 G A ITGA3 Missense_Mutation p.G246E 0.46 tolerated(0.08) possibly_damaging(0.856) TCGA-YG-AA3O-06 17 48549856 48549856 G A ACSF2 Missense_Mutation p.R464Q 0.44 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 48549858 48549858 G A ACSF2 Missense_Mutation p.G465R 0.43 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 48692826 48692826 G A CACNA1G Missense_Mutation p.G1622R 0.17 tolerated(0.06) probably_damaging(0.993) TCGA-YG-AA3O-06 17 51900676 51900676 C T KIF2B Silent p.P94P 0.44 TCGA-YG-AA3O-06 17 51901704 51901704 G A KIF2B Missense_Mutation p.R437Q 0.62 tolerated(0.08) benign(0.006) TCGA-YG-AA3O-06 17 5238558 5238558 C T RABEP1 Silent p.S149S 0.35 TCGA-YG-AA3O-06 17 55182841 55182841 C T AKAP1 Missense_Mutation p.R6C 0.44 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 55946541 55946541 G A CUEDC1 Silent p.A294A 0.21 TCGA-YG-AA3O-06 17 55946542 55946542 G A CUEDC1 Missense_Mutation p.A294V 0.18 tolerated(0.09) benign(0.006) TCGA-YG-AA3O-06 17 56166601 56166601 C T DYNLL2 Silent p.Y77Y 0.14 TCGA-YG-AA3O-06 17 60813943 60813943 T G MARCH10 Missense_Mutation p.H429P 0.16 deleterious(0.01) benign(0.124) TCGA-YG-AA3O-06 17 61958244 61958244 G A GH2 Missense_Mutation p.P115L 0.48 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 17 63534365 63534365 C A AXIN2 Nonsense_Mutation p.E386* 0.24 TCGA-YG-AA3O-06 17 66937037 66937037 C T ABCA8 Missense_Mutation p.D55N 0.28 tolerated(0.09) benign(0.33) TCGA-YG-AA3O-06 17 68128586 68128586 G A KCNJ16 Missense_Mutation p.G120R 0.22 deleterious(0) possibly_damaging(0.878) TCGA-YG-AA3O-06 17 681925 681925 G A GLOD4 Intron 0.67 TCGA-YG-AA3O-06 17 72541078 72541078 G A CD300C Missense_Mutation p.P24S 0.26 tolerated(1) benign(0.028) TCGA-YG-AA3O-06 17 72791151 72791151 T G TMEM104 Missense_Mutation p.V143G 0.15 tolerated(0.11) possibly_damaging(0.589) TCGA-YG-AA3O-06 17 73726319 73726319 C T ITGB4 Intron 0.54 TCGA-YG-AA3O-06 17 73726975 73726975 C T ITGB4 Missense_Mutation p.P341L 0.34 deleterious(0) probably_damaging(0.968) TCGA-YG-AA3O-06 17 73838631 73838631 G A UNC13D Missense_Mutation p.P151L 0.27 tolerated(0.08) benign(0.035) TCGA-YG-AA3O-06 17 73887099 73887099 C T TRIM65 Missense_Mutation p.E439K 0.46 tolerated(0.61) benign(0.009) TCGA-YG-AA3O-06 17 74005188 74005188 G A EVPL Silent p.P1366P 0.43 TCGA-YG-AA3O-06 17 74005189 74005189 G A EVPL Missense_Mutation p.P1366L 0.43 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 17 74073351 74073351 T C GALR2 Silent p.L335L 0.23 TCGA-YG-AA3O-06 17 74865048 74865048 G C MGAT5B 5'Flank 0.46 TCGA-YG-AA3O-06 17 76455225 76455225 C T DNAH17 Missense_Mutation p.G3226D 0.53 probably_damaging(0.983) TCGA-YG-AA3O-06 17 76482365 76482365 C T DNAH17 Missense_Mutation p.E2334K 0.24 probably_damaging(0.993) TCGA-YG-AA3O-06 17 7804285 7804285 C T CHD3 Missense_Mutation p.P1091S 0.79 possibly_damaging(0.876) TCGA-YG-AA3O-06 17 78055706 78055706 C T CCDC40 Missense_Mutation p.A613V 0.68 tolerated(0.11) benign(0.206) TCGA-YG-AA3O-06 17 79892899 79892899 A G PYCR1 Missense_Mutation p.L148P 0.19 deleterious(0) probably_damaging(0.946) TCGA-YG-AA3O-06 17 80887266 80887266 G C TBCD Missense_Mutation p.A961P 0.53 deleterious(0.01) probably_damaging(0.983) TCGA-YG-AA3O-06 17 80887267 80887267 C A TBCD Missense_Mutation p.A961E 0.50 deleterious(0) probably_damaging(0.955) TCGA-YG-AA3O-06 17 9515626 9515626 G A WDR16 Silent p.K285K 0.64 TCGA-YG-AA3O-06 18 12794464 12794464 C T PTPN2 Missense_Mutation p.R354Q 0.16 tolerated(0.14) benign(0.284) TCGA-YG-AA3O-06 18 14478758 14478758 G A CXADRP3 RNA 0.27 TCGA-YG-AA3O-06 18 21181136 21181136 C T ANKRD29 3'UTR 0.47 TCGA-YG-AA3O-06 18 23713922 23713922 C T PSMA8 5'UTR 0.24 TCGA-YG-AA3O-06 18 2544278 2544278 C T METTL4 Missense_Mutation p.D397N 0.41 tolerated(0.07) benign(0.219) TCGA-YG-AA3O-06 18 28576790 28576790 C T DSC3 Silent p.E820E 0.43 TCGA-YG-AA3O-06 18 28671008 28671008 G A DSC2 Missense_Mutation p.P153S 0.16 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 18 28956756 28956756 C A DSG4 5'Flank 0.50 TCGA-YG-AA3O-06 18 31241671 31241671 C T ASXL3 Silent p.F149F 0.38 TCGA-YG-AA3O-06 18 31523126 31523126 G A NOL4 Missense_Mutation p.S482F 0.38 deleterious(0) probably_damaging(0.942) TCGA-YG-AA3O-06 18 32953952 32953952 G A ZNF396 Missense_Mutation p.A102V 0.06 deleterious(0.01) possibly_damaging(0.866) TCGA-YG-AA3O-06 18 3879344 3879344 G A DLGAP1 Missense_Mutation p.T242I 0.23 deleterious(0.04) benign(0.415) TCGA-YG-AA3O-06 18 44560519 44560519 C T TCEB3B Missense_Mutation p.A373T 0.19 deleterious(0.02) possibly_damaging(0.811) TCGA-YG-AA3O-06 18 45394806 45394807 GG A SMAD2 Frame_Shift_Del p.P181Lfs*7 0.26 TCGA-YG-AA3O-06 18 47527635 47527635 G A MYO5B Missense_Mutation p.P201L 0.16 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.51 tolerated(0.12) probably_damaging(0.998) TCGA-YG-AA3O-06 18 61322864 61322864 C T SERPINB3 3'UTR 0.25 TCGA-YG-AA3O-06 18 6311607 6311607 C T L3MBTL4 Silent p.R6R 0.19 TCGA-YG-AA3O-06 18 63529912 63529912 C T CDH7 Silent p.A541A 0.11 TCGA-YG-AA3O-06 18 63547896 63547896 G A CDH7 Silent p.R708R 0.41 TCGA-YG-AA3O-06 18 63547897 63547897 G A CDH7 Missense_Mutation p.E709K 0.44 tolerated(0.25) benign(0.101) TCGA-YG-AA3O-06 18 67721518 67721518 A C RTTN Silent p.V1678V 0.26 TCGA-YG-AA3O-06 18 6887187 6887187 C T ARHGAP28 Silent p.A336A 0.17 TCGA-YG-AA3O-06 18 70451131 70451131 C T NETO1 Missense_Mutation p.R217Q 0.48 tolerated(0.05) probably_damaging(0.964) TCGA-YG-AA3O-06 18 70532042 70532042 C T NETO1 Splice_Site p.X74_splice 0.48 TCGA-YG-AA3O-06 18 7231687 7231687 C T LRRC30 Missense_Mutation p.S184F 0.45 deleterious(0.01) possibly_damaging(0.613) TCGA-YG-AA3O-06 18 74091643 74091643 G A ZNF516 Silent p.F809F 0.51 TCGA-YG-AA3O-06 18 74587473 74587473 A T ZNF236 Missense_Mutation p.E229D 0.45 tolerated(0.2) benign(0.02) TCGA-YG-AA3O-06 18 76754474 76754474 C T SALL3 Missense_Mutation p.S828F 0.48 tolerated(0.1) probably_damaging(0.961) TCGA-YG-AA3O-06 18 77170683 77170683 C T NFATC1 Silent p.F123F 0.17 TCGA-YG-AA3O-06 18 9887201 9887201 C T TXNDC2 Missense_Mutation p.S242F 0.19 tolerated(0.67) probably_damaging(0.973) TCGA-YG-AA3O-06 19 10097043 10097043 C T COL5A3 Missense_Mutation p.G767E 0.36 unknown(0) TCGA-YG-AA3O-06 19 10224442 10224442 C T PPAN-P2RY11 Silent p.Y471Y 0.35 TCGA-YG-AA3O-06 19 10449378 10449378 G A ICAM3 Missense_Mutation p.S108F 0.55 tolerated(0.1) benign(0.032) TCGA-YG-AA3O-06 19 10687966 10687966 C A AP1M2 Missense_Mutation p.D319Y 0.21 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 19 11464237 11464237 G T CCDC159 Silent p.L226L 0.25 TCGA-YG-AA3O-06 19 11762821 11762821 C T ZNF833P RNA 0.40 TCGA-YG-AA3O-06 19 12692182 12692182 G A ZNF490 Missense_Mutation p.S236F 0.30 deleterious(0.04) possibly_damaging(0.665) TCGA-YG-AA3O-06 19 14271037 14271037 C T LPHN1 Missense_Mutation p.G568R 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-YG-AA3O-06 19 14629110 14629110 C G DNAJB1 Missense_Mutation p.E18Q 0.44 tolerated(0.08) benign(0.365) TCGA-YG-AA3O-06 19 14748918 14748918 G A EMR3 Nonsense_Mutation p.R495* 0.34 TCGA-YG-AA3O-06 19 14758033 14758033 G A EMR3 Missense_Mutation p.S281F 0.33 deleterious(0.01) possibly_damaging(0.627) TCGA-YG-AA3O-06 19 15284906 15284906 C G NOTCH3 Missense_Mutation p.R1570P 0.33 deleterious(0) possibly_damaging(0.693) TCGA-YG-AA3O-06 19 15378303 15378303 T A BRD4 Silent p.I161I 0.41 TCGA-YG-AA3O-06 19 15769592 15769592 C T CYP4F3 Missense_Mutation p.A457V 0.35 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 19 15789169 15789169 C T CYP4F12 Silent p.I99I 0.38 TCGA-YG-AA3O-06 19 15794544 15794544 G A CYP4F12 Missense_Mutation p.D297N 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-YG-AA3O-06 19 15807749 15807749 G A CYP4F12 Missense_Mutation p.E477K 0.43 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 19 15839764 15839764 G A OR10H2 Missense_Mutation p.R304K 0.38 tolerated(1) benign(0) TCGA-YG-AA3O-06 19 17131141 17131141 C T CPAMD8 Silent p.K136K 0.21 TCGA-YG-AA3O-06 19 18857875 18857875 C T CRTC1 Missense_Mutation p.P148S 0.30 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 19 18857876 18857876 C T CRTC1 Missense_Mutation p.P148L 0.32 deleterious(0.04) probably_damaging(1) TCGA-YG-AA3O-06 19 23159223 23159223 G A ZNF728 Missense_Mutation p.H306Y 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3O-06 19 2352981 2352981 C T LLfos-48D6.1 Intron 0.48 TCGA-YG-AA3O-06 19 23927723 23927723 G A ZNF681 Missense_Mutation p.S210F 0.22 tolerated(0.66) possibly_damaging(0.831) TCGA-YG-AA3O-06 19 24310145 24310145 C T ZNF254 Missense_Mutation p.T448I 0.33 tolerated(0.47) benign(0.003) TCGA-YG-AA3O-06 19 2808439 2808439 C T THOP1 Silent p.S484S 0.48 TCGA-YG-AA3O-06 19 30312702 30312702 C T CCNE1 Missense_Mutation p.T228I 0.38 tolerated(0.19) benign(0.22) TCGA-YG-AA3O-06 19 3162872 3162872 C T GNA15 Missense_Mutation p.P327L 0.38 deleterious(0.01) benign(0.016) TCGA-YG-AA3O-06 19 33592449 33592449 C T GPATCH1 Missense_Mutation p.S350F 0.25 deleterious(0.02) possibly_damaging(0.65) TCGA-YG-AA3O-06 19 3381997 3381997 C T NFIC Silent p.L106L 0.31 TCGA-YG-AA3O-06 19 34262349 34262349 C T CHST8 Silent p.P54P 0.41 TCGA-YG-AA3O-06 19 35435360 35435360 C T ZNF30 Missense_Mutation p.S498L 0.40 tolerated(0.07) benign(0.233) TCGA-YG-AA3O-06 19 35770015 35770015 C T USF2 Intron 0.38 TCGA-YG-AA3O-06 19 36243274 36243274 T A LIN37 Intron 0.50 TCGA-YG-AA3O-06 19 39960881 39960881 C T SUPT5H Silent p.F499F 0.42 TCGA-YG-AA3O-06 19 40580734 40580734 G A ZNF780A Missense_Mutation p.R540C 0.42 tolerated(0.07) possibly_damaging(0.901) TCGA-YG-AA3O-06 19 41135392 41135392 C T LTBP4 Silent p.C1603C 0.34 TCGA-YG-AA3O-06 19 41135393 41135393 C T LTBP4 Missense_Mutation p.R1604C 0.33 tolerated(0.11) possibly_damaging(0.857) TCGA-YG-AA3O-06 19 41243633 41243633 C T ITPKC Missense_Mutation p.R603C 0.42 deleterious(0) probably_damaging(0.919) TCGA-YG-AA3O-06 19 41271100 41271100 C T SNRPA 3'UTR 0.67 TCGA-YG-AA3O-06 19 41271101 41271101 C T SNRPA 3'UTR 0.67 TCGA-YG-AA3O-06 19 42092906 42092906 G A CEACAM21 3'UTR 0.36 TCGA-YG-AA3O-06 19 42181314 42181314 G A CEACAM7 3'UTR 0.41 TCGA-YG-AA3O-06 19 42213870 42213870 C T CEA Silent p.I112I 0.41 TCGA-YG-AA3O-06 19 42311168 42311168 C T CEACAM3 Intron 0.32 TCGA-YG-AA3O-06 19 42480678 42480678 C T ATP1A3 Missense_Mutation p.D675N 0.33 tolerated(0.12) possibly_damaging(0.578) TCGA-YG-AA3O-06 19 42585163 42585163 C T ZNF574 Missense_Mutation p.A802V 0.38 deleterious(0.03) probably_damaging(0.918) TCGA-YG-AA3O-06 19 43429958 43429958 C T PSG7 Missense_Mutation p.E404K 0.38 tolerated(0.34) benign(0.281) TCGA-YG-AA3O-06 19 43965634 43965634 G A LYPD3 Nonsense_Mutation p.Q304* 0.38 TCGA-YG-AA3O-06 19 44159700 44159700 G A PLAUR Silent p.L166L 0.51 TCGA-YG-AA3O-06 19 44235677 44235677 G A SMG9 3'UTR 0.29 TCGA-YG-AA3O-06 19 44378054 44378054 C T ZNF404 Silent p.V104V 0.30 TCGA-YG-AA3O-06 19 44680794 44680794 C T ZNF226 Missense_Mutation p.S460L 0.47 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 19 44791709 44791709 A C ZNF235 Missense_Mutation p.Y627D 0.39 deleterious(0) probably_damaging(0.952) TCGA-YG-AA3O-06 19 44831702 44831702 G A ZNF112 Missense_Mutation p.L876F 0.42 deleterious(0.03) probably_damaging(0.996) TCGA-YG-AA3O-06 19 46664018 46664018 C T IGFL2 Missense_Mutation p.P85L 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 19 47572464 47572464 G A ZC3H4 Silent p.F761F 0.41 TCGA-YG-AA3O-06 19 49469935 49469935 C T FTL Silent p.G157G 0.45 TCGA-YG-AA3O-06 19 49538969 49538969 C T CGB1 Silent p.K122K 0.13 TCGA-YG-AA3O-06 19 49564674 49564674 C T NTF4 Missense_Mutation p.R194Q 0.32 tolerated(0.13) possibly_damaging(0.895) TCGA-YG-AA3O-06 19 49573328 49573328 C T KCNA7 Missense_Mutation p.E455K 0.45 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-YG-AA3O-06 19 49920478 49920478 G A CCDC155 Missense_Mutation p.R501K 0.53 tolerated_low_confidence(0.11) benign(0.015) TCGA-YG-AA3O-06 19 50105148 50105148 C T PRR12 Silent p.I1582I 0.47 TCGA-YG-AA3O-06 19 50251672 50251672 C T TSKS Missense_Mutation p.E152K 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-YG-AA3O-06 19 50840846 50840846 C T NAPSB RNA 0.33 TCGA-YG-AA3O-06 19 50926084 50926084 C T SPIB Silent p.S43S 0.40 TCGA-YG-AA3O-06 19 50945551 50945551 G A MYBPC2 Missense_Mutation p.E295K 0.33 deleterious(0) probably_damaging(0.947) TCGA-YG-AA3O-06 19 50951556 50951556 G A MYBPC2 Missense_Mutation p.E461K 0.41 deleterious(0) possibly_damaging(0.858) TCGA-YG-AA3O-06 19 51480689 51480689 C T KLK7 3'UTR 0.26 TCGA-YG-AA3O-06 19 52383583 52383583 G A ZNF577 Missense_Mutation p.S18L 0.26 tolerated(0.18) benign(0.023) TCGA-YG-AA3O-06 19 52497964 52497964 A G ZNF615 Missense_Mutation p.L133P 0.46 tolerated(0.92) benign(0.003) TCGA-YG-AA3O-06 19 52955083 52955083 G A ZNF578 5'Flank 0.35 TCGA-YG-AA3O-06 19 53056364 53056364 C T ZNF808 Silent p.I65I 0.27 TCGA-YG-AA3O-06 19 53208401 53208401 G A ZNF611 Missense_Mutation p.S636F 0.36 tolerated(0.56) probably_damaging(0.999) TCGA-YG-AA3O-06 19 53453102 53453102 G A ZNF816 Silent p.I642I 0.35 TCGA-YG-AA3O-06 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.38 TCGA-YG-AA3O-06 19 53885129 53885129 C T ZNF525 Missense_Mutation p.H433Y 0.30 deleterious(0) probably_damaging(0.965) TCGA-YG-AA3O-06 19 54327345 54327345 G A NLRP12 Silent p.F28F 0.34 TCGA-YG-AA3O-06 19 54802202 54802202 G A LILRA3 Missense_Mutation p.S329F 0.43 deleterious(0) possibly_damaging(0.853) TCGA-YG-AA3O-06 19 54866914 54866914 G A LAIR1 Missense_Mutation p.A276V 0.41 tolerated(0.13) probably_damaging(0.935) TCGA-YG-AA3O-06 19 55144522 55144522 A C LILRB1 Silent p.S338S 0.39 TCGA-YG-AA3O-06 19 55330041 55330041 G A KIR3DL1 Silent p.V114V 0.32 TCGA-YG-AA3O-06 19 55450410 55450410 C T NLRP7 Missense_Mutation p.E593K 0.40 tolerated(0.06) benign(0.102) TCGA-YG-AA3O-06 19 55450833 55450833 C G NLRP7 Missense_Mutation p.D452H 0.32 tolerated(0.42) benign(0.001) TCGA-YG-AA3O-06 19 55451320 55451320 C T NLRP7 Silent p.R289R 0.27 TCGA-YG-AA3O-06 19 56244156 56244156 C T NLRP9 Silent p.V347V 0.45 TCGA-YG-AA3O-06 19 56369483 56369483 G A NLRP4 Missense_Mutation p.E242K 0.30 tolerated(0.16) benign(0.152) TCGA-YG-AA3O-06 19 56423181 56423181 C T NLRP13 Missense_Mutation p.D668N 0.44 tolerated(1) benign(0.004) TCGA-YG-AA3O-06 19 56423608 56423608 G A NLRP13 Silent p.I525I 0.36 TCGA-YG-AA3O-06 19 56466299 56466299 C T NLRP8 Missense_Mutation p.T292I 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-YG-AA3O-06 19 56549483 56549483 G A NLRP5 Missense_Mutation p.G903E 0.34 tolerated(0.08) probably_damaging(0.977) TCGA-YG-AA3O-06 19 57089369 57089369 C T ZNF470 Silent p.L524L 0.42 TCGA-YG-AA3O-06 19 57286578 57286578 T C ZIM2 Silent p.K354K 0.30 TCGA-YG-AA3O-06 19 57325077 57325077 G A PEG3 Missense_Mutation p.S1578F 0.45 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 19 5778497 5778497 C T CATSPERD Missense_Mutation p.S736F 0.47 tolerated(0.06) benign(0.087) TCGA-YG-AA3O-06 19 58050363 58050363 C T ZNF549 3'UTR 0.36 TCGA-YG-AA3O-06 19 58189651 58189651 G A ZSCAN4 Missense_Mutation p.G227D 0.38 tolerated(0.22) benign(0.003) TCGA-YG-AA3O-06 19 58640181 58640181 A C ZNF329 Silent p.P230P 0.34 TCGA-YG-AA3O-06 19 6165888 6165888 C A ACSBG2 Missense_Mutation p.F200L 0.34 tolerated(0.37) possibly_damaging(0.883) TCGA-YG-AA3O-06 19 6468352 6468352 C T DENND1C Missense_Mutation p.E562K 0.50 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3O-06 19 6694446 6694446 C T C3 Silent p.K1050K 0.40 TCGA-YG-AA3O-06 19 6906472 6906472 G A EMR1 Silent p.V326V 0.40 TCGA-YG-AA3O-06 19 758592 758592 G A MISP Missense_Mutation p.R549K 0.35 tolerated(0.15) benign(0.199) TCGA-YG-AA3O-06 19 758593 758593 G A MISP Silent p.R549R 0.35 TCGA-YG-AA3O-06 19 7607504 7607504 C T PNPLA6 Missense_Mutation p.S446F 0.36 tolerated(0.25) benign(0.012) TCGA-YG-AA3O-06 19 8976283 8976283 T A MUC16 Missense_Mutation p.D14182V 0.30 possibly_damaging(0.711) TCGA-YG-AA3O-06 19 8994437 8994437 C T MUC16 Missense_Mutation p.E13819K 0.29 probably_damaging(0.983) TCGA-YG-AA3O-06 19 9026251 9026251 C T MUC16 Silent p.E12245E 0.42 TCGA-YG-AA3O-06 19 9033614 9033614 C T MUC16 Missense_Mutation p.G12108D 0.45 possibly_damaging(0.774) TCGA-YG-AA3O-06 19 9047206 9047206 G A MUC16 Silent p.F11475F 0.39 TCGA-YG-AA3O-06 19 9058561 9058561 G A MUC16 Missense_Mutation p.P9629S 0.37 unknown(0) TCGA-YG-AA3O-06 19 9068247 9068247 C T MUC16 Missense_Mutation p.R6400K 0.34 unknown(0) TCGA-YG-AA3O-06 19 9070001 9070001 G A MUC16 Silent p.S5815S 0.38 TCGA-YG-AA3O-06 19 9070002 9070002 G A MUC16 Missense_Mutation p.S5815F 0.38 unknown(0) TCGA-YG-AA3O-06 19 9083313 9083313 C T MUC16 Silent p.T2834T 0.35 TCGA-YG-AA3O-06 19 9088328 9088328 G A MUC16 Missense_Mutation p.P1163S 0.32 unknown(0) TCGA-YG-AA3O-06 19 9091431 9091431 G A MUC16 Silent p.S128S 0.33 TCGA-YG-AA3O-06 19 9324984 9324984 A G OR7D4 Missense_Mutation p.F177S 0.35 deleterious(0) probably_damaging(0.988) TCGA-YG-AA3O-06 1 104112850 104112850 G A AMY2B Intron 0.35 TCGA-YG-AA3O-06 1 109808476 109808476 C T CELSR2 Silent p.V1949V 0.28 TCGA-YG-AA3O-06 1 110049949 110049949 G A AMIGO1 3'UTR 0.42 TCGA-YG-AA3O-06 1 110049950 110049950 G A AMIGO1 3'UTR 0.42 TCGA-YG-AA3O-06 1 111061013 111061013 G A KCNA10 Missense_Mutation p.R133W 0.42 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 11142929 11142929 G A EXOSC10 Missense_Mutation p.H366Y 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 112999029 112999029 C T CTTNBP2NL Silent p.L305L 0.41 TCGA-YG-AA3O-06 1 113000077 113000077 C T CTTNBP2NL 3'UTR 0.36 TCGA-YG-AA3O-06 1 113153488 113153488 A C ST7L Missense_Mutation p.N142K 0.43 tolerated(0.21) benign(0.034) TCGA-YG-AA3O-06 1 113212201 113212201 A T CAPZA1 Missense_Mutation p.I232L 0.34 deleterious(0.03) benign(0.399) TCGA-YG-AA3O-06 1 114399308 114399308 G A PTPN22 Intron 0.31 TCGA-YG-AA3O-06 1 11561095 11561095 G A PTCHD2 Missense_Mutation p.E16K 0.42 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-YG-AA3O-06 1 116574143 116574143 C T SLC22A15 Silent p.F295F 0.39 TCGA-YG-AA3O-06 1 120307250 120307250 C T HMGCS2 Splice_Site p.X35_splice 0.36 TCGA-YG-AA3O-06 1 12082416 12082416 C T MIIP Missense_Mutation p.P127S 0.38 tolerated(0.42) benign(0.077) TCGA-YG-AA3O-06 1 12854244 12854244 G A PRAMEF1 Silent p.K156K 0.23 TCGA-YG-AA3O-06 1 12908047 12908047 A C HNRNPCL1 Missense_Mutation p.D32E 0.13 deleterious(0.01) benign(0.167) TCGA-YG-AA3O-06 1 13036586 13036586 C T PRAMEF22 Missense_Mutation p.P220S 0.26 tolerated(0.75) benign(0.012) TCGA-YG-AA3O-06 1 142713255 142713255 C T RP11-417J8.6 RNA 0.42 TCGA-YG-AA3O-06 1 145290446 145290446 C T NOTCH2NL 3'Flank 0.05 TCGA-YG-AA3O-06 1 147131132 147131132 G A ACP6 Missense_Mutation p.R168W 0.28 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 149882491 149882491 G A SV2A Missense_Mutation p.S281F 0.44 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 1 152059604 152059604 C T TCHHL1 Missense_Mutation p.G185E 0.43 tolerated(0.42) benign(0.024) TCGA-YG-AA3O-06 1 152060484 152060484 G A TCHHL1 Nonsense_Mutation p.Q46* 0.29 TCGA-YG-AA3O-06 1 152785287 152785287 C T LCE1B 3'UTR 0.48 TCGA-YG-AA3O-06 1 152882454 152882454 G A IVL Missense_Mutation p.E61K 0.50 deleterious_low_confidence(0.05) unknown(0) TCGA-YG-AA3O-06 1 152957744 152957744 C T SPRR1A Missense_Mutation p.P13L 0.27 tolerated(0.1) unknown(0) TCGA-YG-AA3O-06 1 153317853 153317853 G A PGLYRP4 Missense_Mutation p.P49S 0.28 tolerated(0.77) benign(0.055) TCGA-YG-AA3O-06 1 155104032 155104032 C T EFNA1 Silent p.L104L 0.38 TCGA-YG-AA3O-06 1 155149518 155149518 C T TRIM46 Silent p.I260I 0.46 TCGA-YG-AA3O-06 1 155891324 155891324 G A KIAA0907 Missense_Mutation p.P370S 0.23 tolerated(0.37) probably_damaging(0.996) TCGA-YG-AA3O-06 1 157512847 157512847 C T FCRL5 Missense_Mutation p.E309K 0.23 tolerated(0.45) benign(0.008) TCGA-YG-AA3O-06 1 157665914 157665914 C A FCRL3 Nonsense_Mutation p.E350* 0.29 TCGA-YG-AA3O-06 1 158325930 158325930 G A CD1E Intron 0.20 TCGA-YG-AA3O-06 1 159799816 159799816 C T SLAMF8 Silent p.S67S 0.19 TCGA-YG-AA3O-06 1 160390315 160390315 C T VANGL2 Silent p.F305F 0.27 TCGA-YG-AA3O-06 1 160719736 160719736 G A SLAMF7 Missense_Mutation p.G168R 0.28 deleterious(0) probably_damaging(0.98) TCGA-YG-AA3O-06 1 160769777 160769777 A T LY9 Missense_Mutation p.N120I 0.23 deleterious(0) probably_damaging(0.979) TCGA-YG-AA3O-06 1 160846546 160846546 A G ITLN1 Missense_Mutation p.S284P 0.48 tolerated(0.2) probably_damaging(0.999) TCGA-YG-AA3O-06 1 161019374 161019374 G A ARHGAP30 Missense_Mutation p.S509F 0.20 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 1 161049667 161049667 G A PVRL4 Missense_Mutation p.P51L 0.51 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3O-06 1 161188774 161188774 T C FCER1G 3'UTR 0.54 TCGA-YG-AA3O-06 1 161326501 161326501 C T SDHC Silent p.L92L 0.27 TCGA-YG-AA3O-06 1 161954760 161954760 C T OLFML2B Silent p.K495K 0.30 TCGA-YG-AA3O-06 1 169511381 169511381 C T F5 Missense_Mutation p.G983R 0.29 tolerated(0.27) benign(0.045) TCGA-YG-AA3O-06 1 171254589 171254589 G A FMO1 Missense_Mutation p.R502Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-YG-AA3O-06 1 173570875 173570875 G A SLC9C2 Missense_Mutation p.P14L 0.50 deleterious_low_confidence(0.03) benign(0.15) TCGA-YG-AA3O-06 1 174417455 174417455 C T GPR52 Missense_Mutation p.P69L 0.48 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 175372603 175372603 C T TNR Missense_Mutation p.G217S 0.54 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 17552572 17552572 G A PADI1 Missense_Mutation p.D191N 0.40 tolerated(0.29) probably_damaging(0.965) TCGA-YG-AA3O-06 1 17606847 17606847 G A PADI3 Missense_Mutation p.D520N 0.25 tolerated(0.47) benign(0.002) TCGA-YG-AA3O-06 1 176998824 176998824 C T ASTN1 Missense_Mutation p.D356N 0.51 deleterious_low_confidence(0) benign(0.385) TCGA-YG-AA3O-06 1 177250575 177250575 G A BRINP2 Missense_Mutation p.E755K 0.34 deleterious(0) probably_damaging(0.985) TCGA-YG-AA3O-06 1 179533929 179533929 C T NPHS2 Splice_Site p.X92_splice 0.47 TCGA-YG-AA3O-06 1 180772605 180772605 C A XPR1 Missense_Mutation p.T102N 0.53 tolerated(0.61) benign(0) TCGA-YG-AA3O-06 1 181701949 181701949 G A CACNA1E Silent p.E909E 0.58 TCGA-YG-AA3O-06 1 181754902 181754902 C T CACNA1E Silent p.I1911I 0.49 TCGA-YG-AA3O-06 1 181764078 181764078 G A CACNA1E Missense_Mutation p.E2036K 0.49 deleterious(0.05) possibly_damaging(0.678) TCGA-YG-AA3O-06 1 182921871 182921871 T C SHCBP1L Missense_Mutation p.D133G 0.17 tolerated(0.49) benign(0) TCGA-YG-AA3O-06 1 19166301 19166301 G A TAS1R2 Missense_Mutation p.T771I 0.24 tolerated(0.85) benign(0.06) TCGA-YG-AA3O-06 1 197008366 197008366 G A F13B 3'UTR 0.47 TCGA-YG-AA3O-06 1 197313574 197313574 C T CRB1 Silent p.L272L 0.26 TCGA-YG-AA3O-06 1 197313575 197313575 C T CRB1 Missense_Mutation p.H273Y 0.27 tolerated(0.09) possibly_damaging(0.904) TCGA-YG-AA3O-06 1 197704852 197704852 C T DENND1B Intron 0.33 TCGA-YG-AA3O-06 1 197876371 197876371 C T C1orf53 3'UTR 0.17 TCGA-YG-AA3O-06 1 19981927 19981927 T A MINOS1-NBL1 Missense_Mutation p.I94N 0.62 tolerated(0.14) possibly_damaging(0.862) TCGA-YG-AA3O-06 1 200017426 200017426 C T NR5A2 Missense_Mutation p.S197F 0.52 deleterious(0.01) benign(0.044) TCGA-YG-AA3O-06 1 200880599 200880599 G A C1orf106 Silent p.A326A 0.31 TCGA-YG-AA3O-06 1 201297904 201297904 G A PKP1 Silent p.R728R 0.44 TCGA-YG-AA3O-06 1 201333462 201333462 C T TNNT2 Silent p.R141R 0.46 TCGA-YG-AA3O-06 1 201868488 201868488 C T LMOD1 Silent p.K551K 0.50 TCGA-YG-AA3O-06 1 201938697 201938697 G A TIMM17A 3'UTR 0.36 TCGA-YG-AA3O-06 1 202194552 202194552 G A LGR6 Missense_Mutation p.D72N 0.23 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 202249955 202249955 G A LGR6 Missense_Mutation p.E231K 0.49 tolerated(0.08) possibly_damaging(0.853) TCGA-YG-AA3O-06 1 202287542 202287542 C T LGR6 Missense_Mutation p.P704L 0.19 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 202287543 202287543 C T LGR6 Silent p.P704P 0.19 TCGA-YG-AA3O-06 1 203054757 203054757 G A MYOG Silent p.N111N 0.17 TCGA-YG-AA3O-06 1 203150382 203150382 C T CHI3L1 Missense_Mutation p.D207N 0.47 deleterious(0.03) benign(0.11) TCGA-YG-AA3O-06 1 20517265 20517265 C T UBXN10 Missense_Mutation p.P71S 0.35 tolerated(0.15) benign(0.025) TCGA-YG-AA3O-06 1 20517266 20517266 C T UBXN10 Missense_Mutation p.P71L 0.35 deleterious(0.04) benign(0.057) TCGA-YG-AA3O-06 1 207648519 207648519 G A CR2 Missense_Mutation p.D892N 0.43 tolerated(0.86) benign(0.008) TCGA-YG-AA3O-06 1 207651229 207651229 G A CR2 Splice_Site p.X968_splice 0.39 TCGA-YG-AA3O-06 1 207793338 207793338 C T CR1 Silent p.L2394L 0.50 TCGA-YG-AA3O-06 1 20931507 20931507 G A CDA Missense_Mutation p.D81N 0.39 tolerated(0.46) benign(0.004) TCGA-YG-AA3O-06 1 209933390 209933390 C T TRAF3IP3 Silent p.I2I 0.35 TCGA-YG-AA3O-06 1 212798828 212798828 G A FAM71A Silent p.R203R 0.30 TCGA-YG-AA3O-06 1 214170160 214170160 C T PROX1 Silent p.S94S 0.51 TCGA-YG-AA3O-06 1 216498751 216498751 C G USH2A Missense_Mutation p.D347H 0.31 probably_damaging(1) TCGA-YG-AA3O-06 1 221055508 221055508 C G HLX Missense_Mutation p.P259A 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-YG-AA3O-06 1 223286342 223286342 A C TLR5 Missense_Mutation p.V11G 0.31 deleterious(0) benign(0) TCGA-YG-AA3O-06 1 223408413 223408413 G A SUSD4 Intron 0.30 TCGA-YG-AA3O-06 1 223408414 223408414 G A SUSD4 Intron 0.29 TCGA-YG-AA3O-06 1 226043629 226043629 G A TMEM63A Silent p.F528F 0.42 TCGA-YG-AA3O-06 1 226573229 226573229 G A PARP1 Silent p.N329N 0.57 TCGA-YG-AA3O-06 1 227842810 227842810 C T ZNF678 Missense_Mutation p.H287Y 0.52 deleterious(0) possibly_damaging(0.901) TCGA-YG-AA3O-06 1 228509045 228509045 G A OBSCN Missense_Mutation p.V5792I 0.65 benign(0.127) TCGA-YG-AA3O-06 1 22920076 22920076 C T EPHA8 Silent p.S500S 0.17 TCGA-YG-AA3O-06 1 22923821 22923821 C T EPHA8 Silent p.F594F 0.37 TCGA-YG-AA3O-06 1 229667423 229667423 G A ABCB10 Silent p.L465L 0.20 TCGA-YG-AA3O-06 1 231349672 231349672 C T TRIM67 Silent p.S745S 0.08 TCGA-YG-AA3O-06 1 232942300 232942300 C T MAP10 Missense_Mutation p.P511S 0.54 tolerated(0.16) possibly_damaging(0.558) TCGA-YG-AA3O-06 1 233105748 233105748 C T NTPCR Missense_Mutation p.R130C 0.55 deleterious(0) benign(0.146) TCGA-YG-AA3O-06 1 233394730 233394730 C T PCNXL2 Missense_Mutation p.G293D 0.08 tolerated_low_confidence(0.18) benign(0.002) TCGA-YG-AA3O-06 1 240071403 240071403 C T CHRM3 Missense_Mutation p.P218S 0.42 tolerated(0.27) benign(0.017) TCGA-YG-AA3O-06 1 240071404 240071404 C T CHRM3 Missense_Mutation p.P218L 0.41 tolerated(0.07) benign(0.017) TCGA-YG-AA3O-06 1 240071613 240071613 C T CHRM3 Nonsense_Mutation p.R288* 0.56 TCGA-YG-AA3O-06 1 245850063 245850063 C T KIF26B Missense_Mutation p.P1260S 0.18 tolerated(0.16) unknown(0) TCGA-YG-AA3O-06 1 247070873 247070873 G C AHCTF1 Missense_Mutation p.N257K 0.28 deleterious(0) probably_damaging(0.989) TCGA-YG-AA3O-06 1 247492863 247492863 G A ZNF496 Silent p.C6C 0.24 TCGA-YG-AA3O-06 1 247614841 247614841 G A OR2B11 Silent p.L148L 0.22 TCGA-YG-AA3O-06 1 247719744 247719744 G T GCSAML Missense_Mutation p.G22V 0.38 tolerated(0.26) benign(0) TCGA-YG-AA3O-06 1 247752368 247752368 G A OR2G2 Missense_Mutation p.R236K 0.48 deleterious(0) benign(0.004) TCGA-YG-AA3O-06 1 247875437 247875437 G A OR6F1 Silent p.I207I 0.38 TCGA-YG-AA3O-06 1 247921002 247921002 C T OR1C1 Missense_Mutation p.R236K 0.52 tolerated(1) benign(0.004) TCGA-YG-AA3O-06 1 248202232 248202232 C T OR2L2 Silent p.L221L 0.26 TCGA-YG-AA3O-06 1 248551342 248551342 C T OR2T6 Silent p.L145L 0.38 TCGA-YG-AA3O-06 1 248637008 248637008 C T OR2T3 Silent p.L119L 0.42 TCGA-YG-AA3O-06 1 249106205 249106205 T C SH3BP5L Missense_Mutation p.D359G 0.38 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-YG-AA3O-06 1 2537693 2537693 G C MMEL1 Missense_Mutation p.I248M 0.27 deleterious(0) possibly_damaging(0.812) TCGA-YG-AA3O-06 1 2939288 2939288 C T ACTRT2 Silent p.S346S 0.29 TCGA-YG-AA3O-06 1 35824996 35824996 C T ZMYM4 Missense_Mutation p.P186S 0.33 tolerated_low_confidence(0.76) benign(0.001) TCGA-YG-AA3O-06 1 36479569 36479569 A T AGO3 Missense_Mutation p.Q442H 0.29 deleterious(0.02) benign(0.004) TCGA-YG-AA3O-06 1 37270465 37270465 G A GRIK3 Intron 0.33 TCGA-YG-AA3O-06 1 37282754 37282754 C T GRIK3 Missense_Mutation p.M666I 0.19 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 1 42896395 42896395 G A ZMYND12 3'UTR 0.39 TCGA-YG-AA3O-06 1 43316996 43316996 A - ZNF691 Frame_Shift_Del p.R154Efs*41 0.16 TCGA-YG-AA3O-06 1 44685503 44685505 AGA - DMAP1 In_Frame_Del p.K337del 0.37 TCGA-YG-AA3O-06 1 45293594 45293594 G A PTCH2 Missense_Mutation p.S660F 0.44 deleterious(0.03) benign(0.227) TCGA-YG-AA3O-06 1 47365968 47365968 G A CYP4Z2P RNA 0.46 TCGA-YG-AA3O-06 1 53416453 53416453 A G SCP2 Missense_Mutation p.I76V 0.45 tolerated(0.57) benign(0.006) TCGA-YG-AA3O-06 1 55066973 55066973 C T ACOT11 Missense_Mutation p.R306C 0.30 tolerated(0.05) benign(0.035) TCGA-YG-AA3O-06 1 55165997 55165997 C T MROH7 Missense_Mutation p.L990F 0.36 tolerated(0.17) benign(0.05) TCGA-YG-AA3O-06 1 56977770 56977770 G A PPAP2B Silent p.L230L 0.23 TCGA-YG-AA3O-06 1 57394995 57394995 G A C8B 3'UTR 0.34 TCGA-YG-AA3O-06 1 57491661 57491661 G A DAB1 Missense_Mutation p.S260F 0.36 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3O-06 1 5950940 5950940 G A NPHP4 Silent p.A764A 0.38 TCGA-YG-AA3O-06 1 5950941 5950941 G A NPHP4 Missense_Mutation p.A764V 0.38 deleterious(0.03) benign(0.22) TCGA-YG-AA3O-06 1 62675517 62675517 C T L1TD1 Silent p.F357F 0.28 TCGA-YG-AA3O-06 1 62704012 62704012 G A KANK4 Silent p.T975T 0.29 TCGA-YG-AA3O-06 1 62704013 62704013 G A KANK4 Missense_Mutation p.T975I 0.28 deleterious(0) benign(0.011) TCGA-YG-AA3O-06 1 62916143 62916143 C T USP1 Nonsense_Mutation p.Q617* 0.27 TCGA-YG-AA3O-06 1 64643782 64643782 C T ROR1 Silent p.F686F 0.33 TCGA-YG-AA3O-06 1 64643858 64643858 C T ROR1 Missense_Mutation p.P712S 0.32 tolerated(0.07) benign(0.213) TCGA-YG-AA3O-06 1 64644015 64644015 G A ROR1 Missense_Mutation p.G764E 0.23 deleterious(0.02) possibly_damaging(0.829) TCGA-YG-AA3O-06 1 70504842 70504842 G A LRRC7 Missense_Mutation p.R1074K 0.35 tolerated(0.11) probably_damaging(0.977) TCGA-YG-AA3O-06 1 71318539 71318539 C T PTGER3 Missense_Mutation p.E370K 0.41 tolerated(0.32) benign(0) TCGA-YG-AA3O-06 1 75055355 75055355 C T C1orf173 Silent p.V712V 0.38 TCGA-YG-AA3O-06 1 75078456 75078456 G A C1orf173 Silent p.F346F 0.29 TCGA-YG-AA3O-06 1 75102094 75102094 C T C1orf173 Missense_Mutation p.G158E 0.38 deleterious(0.04) probably_damaging(0.969) TCGA-YG-AA3O-06 1 75596508 75596508 C T LHX8 Intron 0.41 TCGA-YG-AA3O-06 1 75679456 75679456 G A SLC44A5 Silent p.F632F 0.29 TCGA-YG-AA3O-06 1 75707705 75707705 C T SLC44A5 Silent p.A171A 0.29 TCGA-YG-AA3O-06 1 79116143 79116143 C T IFI44 Missense_Mutation p.S88L 0.40 tolerated(0.24) benign(0.064) TCGA-YG-AA3O-06 1 87036819 87036819 G A CLCA4 Silent p.G414G 0.31 TCGA-YG-AA3O-06 1 89520836 89520836 C T GBP1 Silent p.Q477Q 0.37 TCGA-YG-AA3O-06 1 9098019 9098019 C T SLC2A5 Missense_Mutation p.M413I 0.42 tolerated(0.46) possibly_damaging(0.465) TCGA-YG-AA3O-06 1 94466661 94466661 C T ABCA4 Missense_Mutation p.D2095N 0.51 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 1 94654429 94654429 C T ARHGAP29 Missense_Mutation p.E549K 0.40 deleterious(0) possibly_damaging(0.654) TCGA-YG-AA3O-06 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.34 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 20 13709069 13709069 A G ESF1 Missense_Mutation p.V665A 0.50 deleterious(0) probably_damaging(0.978) TCGA-YG-AA3O-06 20 24950930 24950930 T C APMAP Missense_Mutation p.T206A 0.59 tolerated(0.31) benign(0.173) TCGA-YG-AA3O-06 20 25187795 25187795 C T ENTPD6 Silent p.P46P 0.62 TCGA-YG-AA3O-06 20 25206294 25206294 C T ENTPD6 3'UTR 0.67 TCGA-YG-AA3O-06 20 2779518 2779518 C T CPXM1 Missense_Mutation p.R65Q 0.61 tolerated_low_confidence(0.15) benign(0.004) TCGA-YG-AA3O-06 20 31961942 31961942 A C CDK5RAP1 Missense_Mutation p.V395G 0.52 deleterious(0) probably_damaging(0.96) TCGA-YG-AA3O-06 20 33330873 33330873 G A NCOA6 Missense_Mutation p.P1063S 0.51 benign(0.001) TCGA-YG-AA3O-06 20 33851599 33851599 G A MMP24 Missense_Mutation p.D275N 0.33 tolerated(0.25) probably_damaging(0.988) TCGA-YG-AA3O-06 20 34022399 34022399 G A GDF5 Missense_Mutation p.R272W 0.44 deleterious(0.05) probably_damaging(0.965) TCGA-YG-AA3O-06 20 35129006 35129006 C T DLGAP4 Missense_Mutation p.S832F 0.52 deleterious(0.01) possibly_damaging(0.888) TCGA-YG-AA3O-06 20 41420006 41420006 G A PTPRT Silent p.F105F 0.56 TCGA-YG-AA3O-06 20 42208681 42208681 C T SGK2 Missense_Mutation p.P367S 0.52 deleterious(0.01) possibly_damaging(0.735) TCGA-YG-AA3O-06 20 42315710 42315710 G A MYBL2 Silent p.G166G 0.18 TCGA-YG-AA3O-06 20 43653648 43653648 C T STK4 Silent p.S394S 0.59 TCGA-YG-AA3O-06 20 43881734 43881734 G T SLPI Silent p.P101P 0.54 TCGA-YG-AA3O-06 20 45130067 45130067 G A ZNF334 Silent p.Y637Y 0.26 TCGA-YG-AA3O-06 20 45132940 45132940 G A ZNF334 Missense_Mutation p.H52Y 0.20 tolerated(0.11) benign(0.053) TCGA-YG-AA3O-06 20 47683021 47683021 C T CSE1L Silent p.L150L 0.60 TCGA-YG-AA3O-06 20 51871408 51871408 G A TSHZ2 Missense_Mutation p.E471K 0.15 tolerated(0.54) benign(0.031) TCGA-YG-AA3O-06 20 54573733 54573733 C T CBLN4 Silent p.T162T 0.20 TCGA-YG-AA3O-06 20 56083796 56083796 A C CTCFL Missense_Mutation p.F514V 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 20 57876563 57876563 G A EDN3 Missense_Mutation p.A51T 0.67 tolerated(0.08) benign(0) TCGA-YG-AA3O-06 20 57899517 57899517 G A EDN3 3'UTR 0.25 TCGA-YG-AA3O-06 20 58416483 58416483 G A PHACTR3 Missense_Mutation p.D494N 0.25 deleterious(0) possibly_damaging(0.777) TCGA-YG-AA3O-06 20 60775766 60775766 G C MTG2 Missense_Mutation p.G285A 0.25 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 20 60962668 60962668 T A RPS21 Missense_Mutation p.S18T 0.48 deleterious(0.03) possibly_damaging(0.589) TCGA-YG-AA3O-06 20 61143979 61143979 C T C20orf166 5'Flank 0.23 TCGA-YG-AA3O-06 20 62905007 62905007 C T PCMTD2 3'UTR 0.61 TCGA-YG-AA3O-06 20 8630092 8630092 C T PLCB1 Missense_Mutation p.S197L 0.50 deleterious(0.04) benign(0.007) TCGA-YG-AA3O-06 20 8862482 8862482 G A PLCB1 Missense_Mutation p.D1213N 0.16 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-YG-AA3O-06 21 10916471 10916471 C T TPTE Missense_Mutation p.R392K 0.10 deleterious(0.02) possibly_damaging(0.45) TCGA-YG-AA3O-06 21 10951340 10951340 C T TPTE Silent p.L124L 0.12 TCGA-YG-AA3O-06 21 10951367 10951367 G A TPTE Silent p.F115F 0.13 TCGA-YG-AA3O-06 21 11038913 11038913 G A BAGE2 RNA 0.05 TCGA-YG-AA3O-06 21 11049583 11049583 C T BAGE2 RNA 0.12 TCGA-YG-AA3O-06 21 19737462 19737462 G A TMPRSS15 Silent p.I256I 0.62 TCGA-YG-AA3O-06 21 19775936 19775936 C T TMPRSS15 Missense_Mutation p.G2R 0.62 tolerated_low_confidence(0.49) benign(0.006) TCGA-YG-AA3O-06 21 31797929 31797929 C T KRTAP13-3 Missense_Mutation p.G101D 0.68 deleterious(0.04) benign(0.309) TCGA-YG-AA3O-06 21 35821779 35821779 C T KCNE1 Missense_Mutation p.G52R 0.39 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 21 41684075 41684075 C T DSCAM Silent p.G665G 0.54 TCGA-YG-AA3O-06 21 42080539 42080539 C T DSCAM Missense_Mutation p.D68N 0.60 tolerated(0.18) benign(0.258) TCGA-YG-AA3O-06 21 42694780 42694780 G A FAM3B Intron 0.33 TCGA-YG-AA3O-06 21 44179150 44179150 G A PDE9A Silent p.L284L 0.50 TCGA-YG-AA3O-06 21 45094523 45094523 C T RRP1B Missense_Mutation p.R122C 0.65 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3O-06 22 18385472 18385472 T A MICAL3 Missense_Mutation p.I172F 0.78 probably_damaging(0.933) TCGA-YG-AA3O-06 22 18845938 18845938 C T BCRP7 Intron 0.45 TCGA-YG-AA3O-06 22 19751699 19751699 C T TBX1 Silent p.S178S 0.38 TCGA-YG-AA3O-06 22 22764318 22764318 G A IGLV1-40 Silent p.Q20Q 0.51 TCGA-YG-AA3O-06 22 22764319 22764319 T A IGLV1-40 Missense_Mutation p.S21T 0.51 deleterious_low_confidence(0.01) benign(0.257) TCGA-YG-AA3O-06 22 23040763 23040763 G A IGLV2-23 Missense_Mutation p.E71K 0.45 tolerated_low_confidence(0.35) benign(0.002) TCGA-YG-AA3O-06 22 23615288 23615288 G A BCR Missense_Mutation p.D648N 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-YG-AA3O-06 22 24095238 24095238 C T VPREB3 Missense_Mutation p.R66Q 0.25 tolerated(0.06) probably_damaging(0.958) TCGA-YG-AA3O-06 22 24574179 24574179 C T CABIN1 3'UTR 0.40 TCGA-YG-AA3O-06 22 26176142 26176142 C T MYO18B Missense_Mutation p.R730C 0.29 deleterious(0.01) possibly_damaging(0.629) TCGA-YG-AA3O-06 22 31328692 31328692 C G MORC2 Missense_Mutation p.D801H 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.77) TCGA-YG-AA3O-06 22 31658667 31658667 G A LIMK2 Silent p.R227R 0.59 TCGA-YG-AA3O-06 22 36960563 36960563 G A CACNG2 Silent p.S269S 0.40 TCGA-YG-AA3O-06 22 37331671 37331671 G A CSF2RB Splice_Site p.X469_splice 0.25 TCGA-YG-AA3O-06 22 38120218 38120218 C T TRIOBP Missense_Mutation p.S552F 0.23 tolerated_low_confidence(0.16) possibly_damaging(0.485) TCGA-YG-AA3O-06 22 39482317 39482317 C T APOBEC3G Missense_Mutation p.H257Y 0.37 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 22 39909572 39909572 G C MIEF1 Missense_Mutation p.Q212H 0.28 deleterious(0.01) possibly_damaging(0.766) TCGA-YG-AA3O-06 22 40719258 40719258 C T TNRC6B 3'UTR 0.16 TCGA-YG-AA3O-06 22 44068144 44068144 G A EFCAB6 Silent p.F487F 0.51 TCGA-YG-AA3O-06 22 45312328 45312328 G A PHF21B Silent p.A132A 0.36 TCGA-YG-AA3O-06 22 46930647 46930647 G A CELSR1 Silent p.S807S 0.34 TCGA-YG-AA3O-06 22 50688729 50688729 A G HDAC10 Intron 0.21 TCGA-YG-AA3O-06 22 50893281 50893281 C G SBF1 Missense_Mutation p.V1592L 0.18 tolerated(0.45) benign(0.047) TCGA-YG-AA3O-06 22 51183313 51183313 C T ACR Missense_Mutation p.P315L 0.80 tolerated(0.06) benign(0.023) TCGA-YG-AA3O-06 2 103148936 103148936 G A SLC9A4 Missense_Mutation p.R729K 0.32 tolerated(0.62) benign(0.053) TCGA-YG-AA3O-06 2 106694220 106694220 G A C2orf40 Splice_Site p.X96_splice 0.21 TCGA-YG-AA3O-06 2 107459755 107459755 C T ST6GAL2 Missense_Mutation p.D227N 0.53 benign(0.126) TCGA-YG-AA3O-06 2 107460434 107460434 G A ST6GAL2 5'UTR 0.31 TCGA-YG-AA3O-06 2 108488707 108488707 G A RGPD4 Missense_Mutation p.S1416N 0.21 tolerated(0.56) benign(0.012) TCGA-YG-AA3O-06 2 110322089 110322089 G A SEPT10 Silent p.D294D 0.45 TCGA-YG-AA3O-06 2 113305064 113305064 C T POLR1B Missense_Mutation p.P138S 0.43 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 2 113670579 113670579 C T IL37 5'UTR 0.11 TCGA-YG-AA3O-06 2 11706667 11706667 C T GREB1 Silent p.V113V 0.48 TCGA-YG-AA3O-06 2 11706668 11706668 C T GREB1 Missense_Mutation p.P114S 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-YG-AA3O-06 2 118743631 118743631 G A CCDC93 Silent p.P178P 0.24 TCGA-YG-AA3O-06 2 118758408 118758408 G A CCDC93 Missense_Mutation p.P118S 0.19 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3O-06 2 121747129 121747129 C T GLI2 Silent p.S1213S 0.36 TCGA-YG-AA3O-06 2 125282008 125282008 G C CNTNAP5 Missense_Mutation p.G485R 0.21 tolerated(0.16) probably_damaging(1) TCGA-YG-AA3O-06 2 127828175 127828175 T C BIN1 Missense_Mutation p.Y90C 0.38 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3O-06 2 128322828 128322828 G A MYO7B Silent p.E51E 0.36 TCGA-YG-AA3O-06 2 128471302 128471302 G A WDR33 Missense_Mutation p.P1055S 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.699) TCGA-YG-AA3O-06 2 130832875 130832875 C T POTEF Missense_Mutation p.D724N 0.17 deleterious_low_confidence(0.02) probably_damaging(0.967) TCGA-YG-AA3O-06 2 130948082 130948082 C T MZT2B Silent p.A120A 0.31 TCGA-YG-AA3O-06 2 130951991 130951991 C T TUBA3E Missense_Mutation p.G142R 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3O-06 2 137814133 137814133 C T THSD7B Nonsense_Mutation p.R95* 0.55 TCGA-YG-AA3O-06 2 137872760 137872760 C T THSD7B Silent p.P422P 0.38 TCGA-YG-AA3O-06 2 137917892 137917892 G A THSD7B Nonsense_Mutation p.W493* 0.22 TCGA-YG-AA3O-06 2 138163180 138163180 C T THSD7B Intron 0.24 TCGA-YG-AA3O-06 2 141739738 141739738 C T LRP1B Missense_Mutation p.A960T 0.18 benign(0.002) TCGA-YG-AA3O-06 2 141986759 141986759 G A LRP1B Silent p.S281S 0.18 TCGA-YG-AA3O-06 2 149240734 149240734 C T MBD5 Silent p.I858I 0.26 TCGA-YG-AA3O-06 2 155099279 155099279 G A GALNT13 Missense_Mutation p.E183K 0.46 tolerated(0.47) benign(0.003) TCGA-YG-AA3O-06 2 158395207 158395207 C T ACVR1C Missense_Mutation p.E412K 0.28 deleterious(0) possibly_damaging(0.792) TCGA-YG-AA3O-06 2 160843822 160843822 G A PLA2R1 Missense_Mutation p.R628C 0.35 tolerated(0.16) benign(0.082) TCGA-YG-AA3O-06 2 165947554 165947554 G A SCN3A Silent p.F1703F 0.26 TCGA-YG-AA3O-06 2 166909393 166909393 G A SCN1A Silent p.L221L 0.42 TCGA-YG-AA3O-06 2 167298110 167298110 C T SCN7A Silent p.K651K 0.37 TCGA-YG-AA3O-06 2 168099691 168099691 G A XIRP2 Missense_Mutation p.G597S 0.15 benign(0.02) TCGA-YG-AA3O-06 2 169801276 169801276 C T ABCB11 Missense_Mutation p.G817R 0.22 deleterious(0) possibly_damaging(0.853) TCGA-YG-AA3O-06 2 169993899 169993899 C T LRP2 Intron 0.50 TCGA-YG-AA3O-06 2 170014006 170014006 C T LRP2 Missense_Mutation p.G3965E 0.50 benign(0.32) TCGA-YG-AA3O-06 2 171700665 171700665 C T GAD1 Missense_Mutation p.P250L 0.14 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 2 17697053 17697053 G A RAD51AP2 Missense_Mutation p.S877L 0.33 tolerated(0.18) benign(0.041) TCGA-YG-AA3O-06 2 179437912 179437912 T G TTN Missense_Mutation p.K24316T 0.39 TCGA-YG-AA3O-06 2 179469986 179469986 C T TTN Missense_Mutation p.G17973E 0.38 TCGA-YG-AA3O-06 2 179484609 179484609 G A TTN Missense_Mutation p.P15479S 0.19 TCGA-YG-AA3O-06 2 179528411 179528411 G A TTN Missense_Mutation p.P12159S 0.20 TCGA-YG-AA3O-06 2 179542492 179542492 C T TTN Missense_Mutation p.E11383K 0.47 TCGA-YG-AA3O-06 2 179593122 179593122 G A TTN Nonsense_Mutation p.Q6477* 0.27 TCGA-YG-AA3O-06 2 179594198 179594198 C T TTN Missense_Mutation p.E6229K 0.40 TCGA-YG-AA3O-06 2 179596678 179596678 C T TTN Missense_Mutation p.E5642K 0.44 TCGA-YG-AA3O-06 2 179597051 179597051 A G TTN Silent p.L5549L 0.28 TCGA-YG-AA3O-06 2 179597579 179597579 C T TTN Missense_Mutation p.G5442R 0.55 TCGA-YG-AA3O-06 2 179613737 179613737 C T TTN Intron 0.35 TCGA-YG-AA3O-06 2 179629459 179629459 C T TTN Silent p.V3261V 0.34 TCGA-YG-AA3O-06 2 179641392 179641392 C T TTN Silent p.T1733T 0.47 TCGA-YG-AA3O-06 2 179642161 179642161 A G TTN Missense_Mutation p.I1544T 0.27 TCGA-YG-AA3O-06 2 182468736 182468736 C T CERKL Silent p.L103L 0.24 TCGA-YG-AA3O-06 2 183011768 183011768 A C PDE1A 3'UTR 0.32 TCGA-YG-AA3O-06 2 18765453 18765453 C T NT5C1B Silent p.R324R 0.35 TCGA-YG-AA3O-06 2 189909959 189909959 C T COL5A2 Splice_Site p.X1104_splice 0.38 TCGA-YG-AA3O-06 2 189916104 189916104 G T COL5A2 Missense_Mutation p.P958Q 0.31 unknown(0) TCGA-YG-AA3O-06 2 191941050 191941050 C T STAT4 Missense_Mutation p.G92E 0.26 tolerated(1) benign(0.013) TCGA-YG-AA3O-06 2 1926310 1926310 C T MYT1L Missense_Mutation p.D411N 0.35 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3O-06 2 196651794 196651794 G A DNAH7 Silent p.F3606F 0.15 TCGA-YG-AA3O-06 2 196722349 196722349 G A DNAH7 Silent p.I2722I 0.42 TCGA-YG-AA3O-06 2 196729526 196729526 C T DNAH7 Missense_Mutation p.E2285K 0.30 deleterious(0) possibly_damaging(0.682) TCGA-YG-AA3O-06 2 196756425 196756425 G A DNAH7 Missense_Mutation p.S1667F 0.18 deleterious(0) benign(0.143) TCGA-YG-AA3O-06 2 201681867 201681867 G A BZW1 Silent p.R179R 0.21 TCGA-YG-AA3O-06 2 202285287 202285287 A G TRAK2 5'UTR 0.33 TCGA-YG-AA3O-06 2 202570156 202570156 G A ALS2 Missense_Mutation p.L1537F 0.12 tolerated(0.24) benign(0.008) TCGA-YG-AA3O-06 2 203160523 203160523 C T NOP58 Missense_Mutation p.S345L 0.29 deleterious(0) possibly_damaging(0.516) TCGA-YG-AA3O-06 2 203420916 203420916 C T BMPR2 Missense_Mutation p.A843V 0.26 deleterious(0.04) benign(0.007) TCGA-YG-AA3O-06 2 207527703 207527703 C T DYTN Silent p.K519K 0.33 TCGA-YG-AA3O-06 2 21225337 21225337 C T APOB Silent p.E4319E 0.36 TCGA-YG-AA3O-06 2 216269248 216269248 G T FN1 Silent p.P1039P 0.53 TCGA-YG-AA3O-06 2 218925312 218925312 C T CXCR2P1 RNA 0.37 TCGA-YG-AA3O-06 2 219029758 219029758 C T CXCR1 Silent p.L59L 0.27 TCGA-YG-AA3O-06 2 220037478 220037478 G A CNPPD1 Missense_Mutation p.P355S 0.53 tolerated_low_confidence(0.8) benign(0.002) TCGA-YG-AA3O-06 2 226447232 226447232 G A NYAP2 Missense_Mutation p.E367K 0.35 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 2 228884201 228884201 C T SPHKAP Missense_Mutation p.D457N 0.37 deleterious(0) probably_damaging(0.928) TCGA-YG-AA3O-06 2 228884716 228884716 C T SPHKAP Missense_Mutation p.R285Q 0.27 tolerated(0.48) benign(0.004) TCGA-YG-AA3O-06 2 231307785 231307785 C T SP100 Missense_Mutation p.R81C 0.46 deleterious(0) possibly_damaging(0.835) TCGA-YG-AA3O-06 2 231314372 231314372 C T SP100 Missense_Mutation p.S228L 0.28 tolerated(0.13) possibly_damaging(0.519) TCGA-YG-AA3O-06 2 233001287 233001287 C T DIS3L2 Missense_Mutation p.P270S 0.35 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3O-06 2 238475713 238475713 C T PRLH Silent p.F53F 0.38 TCGA-YG-AA3O-06 2 239975288 239975288 C T HDAC4 Nonsense_Mutation p.W1028* 0.50 TCGA-YG-AA3O-06 2 241706751 241706751 G A KIF1A Silent p.L503L 0.56 TCGA-YG-AA3O-06 2 242814517 242814517 C T CXXC11 Silent p.F270F 0.46 TCGA-YG-AA3O-06 2 26997930 26997930 G A SLC35F6 Missense_Mutation p.G57R 0.44 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3O-06 2 27821023 27821023 C T ZNF512 Missense_Mutation p.S60L 0.28 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-YG-AA3O-06 2 28627144 28627144 C T FOSL2 Silent p.V91V 0.36 TCGA-YG-AA3O-06 2 29519898 29519898 C T ALK Missense_Mutation p.G558E 0.25 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 2 30987071 30987071 G A CAPN13 Missense_Mutation p.P209L 0.31 deleterious(0.02) benign(0.208) TCGA-YG-AA3O-06 2 31609343 31609343 C T XDH Missense_Mutation p.E244K 0.41 deleterious(0.02) possibly_damaging(0.794) TCGA-YG-AA3O-06 2 32475763 32475763 C T NLRC4 Silent p.L390L 0.39 TCGA-YG-AA3O-06 2 36623777 36623777 C T CRIM1 Nonsense_Mutation p.Q118* 0.33 TCGA-YG-AA3O-06 2 40656903 40656903 C T SLC8A1 Missense_Mutation p.G173E 0.64 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 2 40657338 40657338 G A SLC8A1 Missense_Mutation p.S28F 0.36 tolerated_low_confidence(0.7) benign(0) TCGA-YG-AA3O-06 2 44190832 44190832 G A LRPPRC Silent p.I461I 0.51 TCGA-YG-AA3O-06 2 45620130 45620130 G A SRBD1 Silent p.V884V 0.26 TCGA-YG-AA3O-06 2 51255214 51255214 G A NRXN1 Silent p.L66L 0.47 TCGA-YG-AA3O-06 2 55825892 55825892 A C SMEK2 Missense_Mutation p.L194W 0.33 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 2 61459667 61459667 A T USP34 Missense_Mutation p.W2345R 0.38 tolerated(0.08) benign(0.175) TCGA-YG-AA3O-06 2 61459668 61459668 C T USP34 Splice_Site p.X2345_splice 0.38 TCGA-YG-AA3O-06 2 62363130 62363130 C T COMMD1 3'UTR 0.50 TCGA-YG-AA3O-06 2 69093640 69093640 G A BMP10 Missense_Mutation p.S133F 0.42 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 2 70131421 70131421 C A SNRNP27 Missense_Mutation p.P150H 0.39 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 2 74327878 74327878 C T TET3 Silent p.L1186L 0.40 TCGA-YG-AA3O-06 2 74689582 74689582 G A MOGS Missense_Mutation p.P445L 0.31 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 2 74760756 74760756 G A LOXL3 Nonsense_Mutation p.Q747* 0.34 TCGA-YG-AA3O-06 2 74760757 74760757 G A LOXL3 Silent p.G746G 0.33 TCGA-YG-AA3O-06 2 76975861 76975861 G A LRRTM4 Missense_Mutation p.S578L 0.43 tolerated_low_confidence(0.12) benign(0.119) TCGA-YG-AA3O-06 2 79363165 79363165 G A REG1P RNA 0.15 TCGA-YG-AA3O-06 2 80835396 80835396 G A CTNNA2 Missense_Mutation p.V795M 0.28 deleterious(0) probably_damaging(0.985) TCGA-YG-AA3O-06 2 89309928 89309928 G A IGKV1-9 Silent p.L9L 0.19 TCGA-YG-AA3O-06 2 89976371 89976371 C T IGKV2D-30 Missense_Mutation p.S81F 0.48 deleterious(0) probably_damaging(0.991) TCGA-YG-AA3O-06 2 90154134 90154134 G A IGKV3D-15 Missense_Mutation p.R74K 0.39 tolerated(0.43) possibly_damaging(0.777) TCGA-YG-AA3O-06 2 95488793 95488793 C T ANKRD20A8P RNA 0.26 TCGA-YG-AA3O-06 2 95945619 95945619 C T PROM2 Missense_Mutation p.S434F 0.42 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 2 9731527 9731527 G A YWHAQ Nonsense_Mutation p.R138* 0.37 TCGA-YG-AA3O-06 3 109046785 109046785 C T DPPA4 3'UTR 0.35 TCGA-YG-AA3O-06 3 112534815 112534815 G A CD200R1L Missense_Mutation p.L271F 0.44 deleterious_low_confidence(0) possibly_damaging(0.508) TCGA-YG-AA3O-06 3 11302188 11302188 G A HRH1 3'UTR 0.29 TCGA-YG-AA3O-06 3 113187991 113187991 G A SPICE1 Missense_Mutation p.P236S 0.25 tolerated(0.64) benign(0.023) TCGA-YG-AA3O-06 3 113753954 113753954 G A KIAA1407 Silent p.Y212Y 0.32 TCGA-YG-AA3O-06 3 119886798 119886798 G A GPR156 Missense_Mutation p.P509L 0.43 tolerated(0.37) benign(0.002) TCGA-YG-AA3O-06 3 120998780 120998780 G A STXBP5L Missense_Mutation p.R696Q 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-YG-AA3O-06 3 121100189 121100190 TA - STXBP5L Frame_Shift_Del p.I824* 0.25 TCGA-YG-AA3O-06 3 121137305 121137305 G A STXBP5L Silent p.R1140R 0.41 TCGA-YG-AA3O-06 3 121151132 121151132 G A POLQ 3'UTR 0.42 TCGA-YG-AA3O-06 3 121712496 121712496 C T ILDR1 Missense_Mutation p.G367E 0.50 tolerated(0.32) benign(0.017) TCGA-YG-AA3O-06 3 121980661 121980661 A G CASR Missense_Mutation p.Q260R 0.35 tolerated(0.21) benign(0.186) TCGA-YG-AA3O-06 3 122001065 122001065 G A CASR Missense_Mutation p.E582K 0.38 tolerated(0.21) possibly_damaging(0.902) TCGA-YG-AA3O-06 3 129130064 129130064 G A EFCAB12 Silent p.P324P 0.56 TCGA-YG-AA3O-06 3 129247720 129247720 C T RHO Silent p.I48I 0.38 TCGA-YG-AA3O-06 3 129370590 129370590 G A TMCC1 Nonsense_Mutation p.Q566* 0.53 TCGA-YG-AA3O-06 3 139894888 139894888 G A CLSTN2 Missense_Mutation p.D69N 0.33 deleterious(0) probably_damaging(0.933) TCGA-YG-AA3O-06 3 140406865 140406865 G A TRIM42 Silent p.K447K 0.33 TCGA-YG-AA3O-06 3 151129240 151129240 G A MED12L Missense_Mutation p.G1994S 0.31 deleterious_low_confidence(0.04) benign(0.102) TCGA-YG-AA3O-06 3 151164774 151164774 T C IGSF10 Missense_Mutation p.N999D 0.36 tolerated(0.66) benign(0.016) TCGA-YG-AA3O-06 3 154145427 154145427 G A GPR149 Missense_Mutation p.T351I 0.45 deleterious(0) probably_damaging(0.949) TCGA-YG-AA3O-06 3 154802003 154802003 C T MME Missense_Mutation p.P16L 0.29 deleterious(0.03) possibly_damaging(0.632) TCGA-YG-AA3O-06 3 154858010 154858010 C T MME Missense_Mutation p.P296S 0.23 tolerated(0.88) probably_damaging(0.999) TCGA-YG-AA3O-06 3 155629062 155629062 G C GMPS Missense_Mutation p.V294L 0.35 tolerated(0.84) benign(0.004) TCGA-YG-AA3O-06 3 160395302 160395302 G A ARL14 Silent p.R56R 0.39 TCGA-YG-AA3O-06 3 164777045 164777045 C T SI Missense_Mutation p.D397N 0.44 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 3 164906443 164906443 T C SLITRK3 Missense_Mutation p.T726A 0.50 tolerated(0.82) benign(0.001) TCGA-YG-AA3O-06 3 166960340 166960340 G A ZBBX Silent p.F782F 0.37 TCGA-YG-AA3O-06 3 167183074 167183074 C T SERPINI2 Silent p.V262V 0.39 TCGA-YG-AA3O-06 3 167240194 167240194 C T WDR49 Missense_Mutation p.E543K 0.50 tolerated(0.12) benign(0.014) TCGA-YG-AA3O-06 3 169514612 169514612 C T LRRC34 Missense_Mutation p.D277N 0.30 tolerated(0.31) benign(0.017) TCGA-YG-AA3O-06 3 169656332 169656332 C T SAMD7 3'UTR 0.57 TCGA-YG-AA3O-06 3 17053380 17053380 C T PLCL2 Missense_Mutation p.P722S 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-YG-AA3O-06 3 178560668 178560668 G A KCNMB2 Silent p.V217V 0.42 TCGA-YG-AA3O-06 3 183551542 183551542 G A PARL Silent p.F300F 0.35 TCGA-YG-AA3O-06 3 184043286 184043286 C T EIF4G1 Nonsense_Mutation p.R1001* 0.31 TCGA-YG-AA3O-06 3 186915543 186915543 G A RTP1 Nonsense_Mutation p.W80* 0.53 TCGA-YG-AA3O-06 3 186943126 186943126 C T MASP1 Missense_Mutation p.G576E 0.25 tolerated(1) benign(0.014) TCGA-YG-AA3O-06 3 187446864 187446864 G A BCL6 Silent p.A443A 0.35 TCGA-YG-AA3O-06 3 189681767 189681767 C T LEPREL1 Missense_Mutation p.D672N 0.29 tolerated(0.08) benign(0.063) TCGA-YG-AA3O-06 3 191888293 191888293 C T FGF12 Silent p.V189V 0.38 TCGA-YG-AA3O-06 3 196387858 196387858 C T NRROS Silent p.D448D 0.28 TCGA-YG-AA3O-06 3 196812587 196812587 G A DLG1 Missense_Mutation p.P601S 0.37 deleterious(0) possibly_damaging(0.559) TCGA-YG-AA3O-06 3 26751190 26751190 C T LRRC3B Silent p.T9T 0.23 TCGA-YG-AA3O-06 3 26751191 26751191 C T LRRC3B Missense_Mutation p.R10C 0.22 tolerated(0.07) benign(0.023) TCGA-YG-AA3O-06 3 26751492 26751492 G A LRRC3B Missense_Mutation p.G110E 0.33 deleterious(0.03) probably_damaging(0.989) TCGA-YG-AA3O-06 3 28365932 28365932 T C AZI2 Silent p.V260V 0.50 TCGA-YG-AA3O-06 3 3143476 3143476 G A IL5RA Silent p.I89I 0.43 TCGA-YG-AA3O-06 3 36570193 36570193 G A STAC Missense_Mutation p.G309E 0.20 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 3 38138146 38138146 C T DLEC1 Missense_Mutation p.P753L 0.36 deleterious(0) probably_damaging(0.96) TCGA-YG-AA3O-06 3 38645255 38645255 G A SCN5A Missense_Mutation p.S613F 0.46 tolerated(0.08) probably_damaging(0.921) TCGA-YG-AA3O-06 3 38645315 38645315 C T SCN5A Missense_Mutation p.S593N 0.32 tolerated(0.1) probably_damaging(0.971) TCGA-YG-AA3O-06 3 38991720 38991720 C T SCN11A Missense_Mutation p.G45E 0.37 tolerated(1) benign(0.076) TCGA-YG-AA3O-06 3 39170655 39170655 C T TTC21A Silent p.V670V 0.34 TCGA-YG-AA3O-06 3 39230322 39230322 G A XIRP1 Silent p.S205S 0.36 TCGA-YG-AA3O-06 3 39374771 39374771 A T CCR8 Nonsense_Mutation p.K317* 0.44 TCGA-YG-AA3O-06 3 42727884 42727884 G A KLHL40 Silent p.K258K 0.32 TCGA-YG-AA3O-06 3 42732414 42732414 T G KLHL40 Silent p.G557G 0.43 TCGA-YG-AA3O-06 3 46062672 46062672 G A XCR1 Silent p.I256I 0.26 TCGA-YG-AA3O-06 3 48719001 48719001 G A NCKIPSD Missense_Mutation p.P271S 0.22 deleterious(0.01) benign(0.099) TCGA-YG-AA3O-06 3 48719002 48719002 G A NCKIPSD Silent p.P270P 0.20 TCGA-YG-AA3O-06 3 49050799 49050799 G A WDR6 Missense_Mutation p.R641Q 0.38 deleterious(0.02) possibly_damaging(0.809) TCGA-YG-AA3O-06 3 49050801 49050801 G A WDR6 Missense_Mutation p.G642S 0.36 deleterious(0.04) possibly_damaging(0.833) TCGA-YG-AA3O-06 3 50416522 50416522 C T CACNA2D2 Splice_Site p.X420_splice 0.42 TCGA-YG-AA3O-06 3 51457570 51457570 G A VPRBP Missense_Mutation p.P523S 0.44 tolerated(0.11) benign(0.187) TCGA-YG-AA3O-06 3 52328391 52328391 C T GLYCTK 3'Flank 0.31 TCGA-YG-AA3O-06 3 52394025 52394025 G A DNAH1 Missense_Mutation p.D1501N 0.36 probably_damaging(0.95) TCGA-YG-AA3O-06 3 5241312 5241312 C G EDEM1 Silent p.V206V 0.30 TCGA-YG-AA3O-06 3 52426985 52426985 C T DNAH1 Missense_Mutation p.S3473F 0.35 probably_damaging(0.998) TCGA-YG-AA3O-06 3 52443588 52443588 A C BAP1 Missense_Mutation p.L35R 0.37 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 3 52557536 52557536 G A STAB1 Missense_Mutation p.G2412S 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 3 52740813 52740813 T C SPCS1 Missense_Mutation p.V101A 0.39 deleterious(0.04) benign(0.349) TCGA-YG-AA3O-06 3 54537566 54537566 G A CACNA2D3 Silent p.G143G 0.29 TCGA-YG-AA3O-06 3 54952532 54952532 G A LRTM1 Missense_Mutation p.P331L 0.38 tolerated(0.22) benign(0.106) TCGA-YG-AA3O-06 3 56053032 56053032 C T ERC2 Missense_Mutation p.D557N 0.31 deleterious(0) probably_damaging(0.982) TCGA-YG-AA3O-06 3 57203339 57203339 A C IL17RD 5'Flank 0.82 TCGA-YG-AA3O-06 3 57203360 57203360 A C IL17RD 5'Flank 0.80 TCGA-YG-AA3O-06 3 58486883 58486883 C T KCTD6 Missense_Mutation p.P80S 0.41 deleterious(0) probably_damaging(0.98) TCGA-YG-AA3O-06 3 62142776 62142776 G T PTPRG Missense_Mutation p.D240Y 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-YG-AA3O-06 3 62518572 62518572 G A CADPS Silent p.F755F 0.43 TCGA-YG-AA3O-06 3 65376869 65376869 T G MAGI1 Missense_Mutation p.K788N 0.45 deleterious(0) possibly_damaging(0.814) TCGA-YG-AA3O-06 3 65387133 65387133 G A MAGI1 Missense_Mutation p.P727L 0.27 deleterious(0) benign(0.094) TCGA-YG-AA3O-06 3 65387134 65387134 G A MAGI1 Missense_Mutation p.P727S 0.27 deleterious(0.04) benign(0.025) TCGA-YG-AA3O-06 3 7620662 7620662 C T GRM7 Missense_Mutation p.S690L 0.33 deleterious(0) possibly_damaging(0.57) TCGA-YG-AA3O-06 3 77542460 77542460 C T ROBO2 Missense_Mutation p.R261C 0.28 tolerated(0.06) possibly_damaging(0.898) TCGA-YG-AA3O-06 3 77607202 77607202 C T ROBO2 Missense_Mutation p.P463S 0.36 deleterious(0.02) possibly_damaging(0.876) TCGA-YG-AA3O-06 3 85984992 85984992 C T CADM2 Missense_Mutation p.S252F 0.41 deleterious(0.04) possibly_damaging(0.906) TCGA-YG-AA3O-06 3 97806033 97806033 G A OR5AC2 Missense_Mutation p.G6E 0.42 tolerated(1) benign(0.001) TCGA-YG-AA3O-06 3 97852299 97852299 G A OR5H1 Missense_Mutation p.G253E 0.49 deleterious(0) probably_damaging(0.986) TCGA-YG-AA3O-06 4 100203562 100203562 C T ADH1A Missense_Mutation p.E257K 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-YG-AA3O-06 4 100434195 100434195 T G C4orf17 5'UTR 0.38 TCGA-YG-AA3O-06 4 1018790 1018790 C T FGFRL1 Silent p.I390I 0.14 TCGA-YG-AA3O-06 4 102951200 102951200 G A BANK1 Missense_Mutation p.G560R 0.14 tolerated(0.41) benign(0.002) TCGA-YG-AA3O-06 4 111482565 111482565 G C ENPEP Missense_Mutation p.E909Q 0.32 tolerated(0.14) benign(0.262) TCGA-YG-AA3O-06 4 114271386 114271386 C T ANK2 Silent p.I1469I 0.30 TCGA-YG-AA3O-06 4 119026244 119026244 G A NDST3 Silent p.G351G 0.40 TCGA-YG-AA3O-06 4 120166537 120166537 A C USP53 Missense_Mutation p.T64P 0.43 tolerated(0.22) benign(0.031) TCGA-YG-AA3O-06 4 121958354 121958354 G A NDNF Missense_Mutation p.P258S 0.27 tolerated(0.46) benign(0.003) TCGA-YG-AA3O-06 4 122831449 122831449 G A TRPC3 Missense_Mutation p.S551F 0.21 deleterious(0) possibly_damaging(0.457) TCGA-YG-AA3O-06 4 122831544 122831544 T A TRPC3 Splice_Site p.X520_splice 0.41 TCGA-YG-AA3O-06 4 126373825 126373825 C T FAT4 Missense_Mutation p.S3885L 0.26 possibly_damaging(0.831) TCGA-YG-AA3O-06 4 129131171 129131171 G A LARP1B Missense_Mutation p.R903K 0.24 tolerated_low_confidence(0.55) benign(0.008) TCGA-YG-AA3O-06 4 13339734 13339734 G A HSP90AB2P RNA 0.40 TCGA-YG-AA3O-06 4 134072845 134072845 C G PCDH10 Missense_Mutation p.S517C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3O-06 4 138442258 138442258 C T PCDH18 Silent p.G1111G 0.26 TCGA-YG-AA3O-06 4 140811991 140811991 A C MAML3 Missense_Mutation p.M200R 0.24 benign(0.167) TCGA-YG-AA3O-06 4 143067019 143067020 - T INPP4B Frame_Shift_Ins p.T565Nfs*14 0.28 TCGA-YG-AA3O-06 4 148984370 148984370 C T ARHGAP10 Missense_Mutation p.S700L 0.48 tolerated(0.31) benign(0.004) TCGA-YG-AA3O-06 4 154217159 154217159 C T TRIM2 Missense_Mutation p.P494L 0.15 deleterious(0) probably_damaging(0.98) TCGA-YG-AA3O-06 4 155241991 155241991 C T DCHS2 Silent p.E1065E 0.43 TCGA-YG-AA3O-06 4 156135673 156135673 C T NPY2R Silent p.I194I 0.63 TCGA-YG-AA3O-06 4 163032473 163032473 C T FSTL5 Missense_Mutation p.G26R 0.36 tolerated_low_confidence(0.36) benign(0.022) TCGA-YG-AA3O-06 4 166915681 166915681 C T TLL1 Silent p.F170F 0.37 TCGA-YG-AA3O-06 4 169206047 169206047 T A DDX60 Missense_Mutation p.E495D 0.24 deleterious(0.04) benign(0.078) TCGA-YG-AA3O-06 4 169206049 169206049 C A DDX60 Nonsense_Mutation p.E495* 0.24 TCGA-YG-AA3O-06 4 170398485 170398485 G A NEK1 Missense_Mutation p.R742C 0.62 deleterious(0.01) probably_damaging(0.995) TCGA-YG-AA3O-06 4 175709987 175709987 C T GLRA3 Missense_Mutation p.R60K 0.46 deleterious(0.02) possibly_damaging(0.718) TCGA-YG-AA3O-06 4 177608452 177608452 C T VEGFC Missense_Mutation p.R345K 0.25 tolerated(0.85) benign(0.005) TCGA-YG-AA3O-06 4 177632650 177632650 C T VEGFC Intron 0.41 TCGA-YG-AA3O-06 4 187004491 187004491 C T TLR3 Missense_Mutation p.P551S 0.21 tolerated(0.09) probably_damaging(0.978) TCGA-YG-AA3O-06 4 187455359 187455359 G A MTNR1A Silent p.F179F 0.25 TCGA-YG-AA3O-06 4 26487262 26487262 G A CCKAR Missense_Mutation p.S208F 0.25 deleterious(0.04) benign(0.03) TCGA-YG-AA3O-06 4 42119647 42119647 C T BEND4 Missense_Mutation p.R498Q 0.47 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-YG-AA3O-06 4 42895324 42895324 G A GRXCR1 Missense_Mutation p.R14Q 0.36 tolerated_low_confidence(0.37) benign(0.311) TCGA-YG-AA3O-06 4 437597 437597 G A ZNF721 Missense_Mutation p.P220L 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-YG-AA3O-06 4 437598 437598 G A ZNF721 Missense_Mutation p.P220S 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-YG-AA3O-06 4 46060518 46060518 G A GABRG1 Silent p.I249I 0.43 TCGA-YG-AA3O-06 4 46264056 46264056 A C GABRA2 Missense_Mutation p.F316V 0.13 deleterious(0) probably_damaging(0.99) TCGA-YG-AA3O-06 4 46305601 46305601 G A GABRA2 Silent p.F244F 0.52 TCGA-YG-AA3O-06 4 54218893 54218893 G A SCFD2 Silent p.I293I 0.41 TCGA-YG-AA3O-06 4 57301763 57301763 G A PPAT 5'UTR 0.69 TCGA-YG-AA3O-06 4 57514885 57514885 C T HOPX 3'UTR 0.51 TCGA-YG-AA3O-06 4 6374283 6374283 G A PPP2R2C Missense_Mutation p.L198F 0.40 deleterious(0.01) probably_damaging(0.934) TCGA-YG-AA3O-06 4 65274985 65274985 C T TECRL Missense_Mutation p.D29N 0.48 tolerated_low_confidence(0.16) benign(0.006) TCGA-YG-AA3O-06 4 654387 654387 C T PDE6B Silent p.F533F 0.35 TCGA-YG-AA3O-06 4 69343147 69343147 G A TMPRSS11E Missense_Mutation p.M256I 0.44 tolerated(0.1) benign(0.001) TCGA-YG-AA3O-06 4 69683865 69683865 C T UGT2B10 Silent p.L279L 0.50 TCGA-YG-AA3O-06 4 70360928 70360928 G A UGT2B4 Missense_Mutation p.L218F 0.27 tolerated(0.15) benign(0.108) TCGA-YG-AA3O-06 4 71509449 71509449 G A ENAM Missense_Mutation p.R769K 0.30 tolerated(0.54) benign(0.043) TCGA-YG-AA3O-06 4 73985954 73985954 G A ANKRD17 Missense_Mutation p.P1317L 0.12 possibly_damaging(0.456) TCGA-YG-AA3O-06 4 74853796 74853796 G A PPBP Missense_Mutation p.P9S 0.38 tolerated(1) benign(0.007) TCGA-YG-AA3O-06 4 7811483 7811483 C T AFAP1 Silent p.R304R 0.15 TCGA-YG-AA3O-06 4 786322 786322 C T CPLX1 Missense_Mutation p.E36K 0.10 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3O-06 4 80327898 80327898 C T GK2 Missense_Mutation p.R486Q 0.33 tolerated(0.18) benign(0.002) TCGA-YG-AA3O-06 4 81122648 81122648 C T PRDM8 Missense_Mutation p.P142S 0.39 tolerated(0.49) benign(0.004) TCGA-YG-AA3O-06 4 81122649 81122649 C T PRDM8 Missense_Mutation p.P142L 0.36 deleterious(0.01) benign(0.127) TCGA-YG-AA3O-06 4 85710965 85710965 G A WDFY3 Missense_Mutation p.H1195Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3O-06 4 85731487 85731487 G A WDFY3 Missense_Mutation p.S633L 0.22 tolerated(0.26) benign(0.001) TCGA-YG-AA3O-06 4 87967430 87967430 C T AFF1 Missense_Mutation p.P51S 0.20 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 101834496 101834496 C T SLCO6A1 Missense_Mutation p.G18E 0.18 tolerated(1) benign(0) TCGA-YG-AA3O-06 5 11018085 11018085 C T CTNND2 Splice_Site p.X1028_splice 0.30 TCGA-YG-AA3O-06 5 112154847 112154847 C T APC Missense_Mutation p.S373F 0.28 benign(0.027) TCGA-YG-AA3O-06 5 112770410 112770410 T C TSSK1B Missense_Mutation p.I43V 0.29 deleterious(0.01) possibly_damaging(0.588) TCGA-YG-AA3O-06 5 114483008 114483008 C T TRIM36 Missense_Mutation p.G128R 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-YG-AA3O-06 5 115146919 115146919 G A CDO1 Silent p.S114S 0.27 TCGA-YG-AA3O-06 5 121785602 121785602 C T SNCAIP Missense_Mutation p.S552L 0.31 deleterious(0.02) possibly_damaging(0.493) TCGA-YG-AA3O-06 5 126792904 126792904 A C MEGF10 Missense_Mutation p.H1106P 0.32 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3O-06 5 126860256 126860256 C T PRRC1 Missense_Mutation p.S46F 0.46 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-YG-AA3O-06 5 129019903 129019903 C T ADAMTS19 Missense_Mutation p.P913S 0.40 tolerated(0.47) benign(0.022) TCGA-YG-AA3O-06 5 131714126 131714126 C T SLC22A5 Silent p.F150F 0.39 TCGA-YG-AA3O-06 5 131976490 131976490 C A RAD50 Missense_Mutation p.L1249M 0.39 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 134147386 134147386 G A DDX46 Missense_Mutation p.E763K 0.41 deleterious(0.01) possibly_damaging(0.758) TCGA-YG-AA3O-06 5 134364820 134364820 G C PITX1 Missense_Mutation p.S198R 0.06 deleterious(0.01) probably_damaging(0.917) TCGA-YG-AA3O-06 5 135207267 135207267 G A SLC25A48 Intron 0.27 TCGA-YG-AA3O-06 5 135651369 135651369 A C TRPC7 Silent p.G293G 0.19 TCGA-YG-AA3O-06 5 13700959 13700959 C T DNAH5 Missense_Mutation p.G4505S 0.25 probably_damaging(0.959) TCGA-YG-AA3O-06 5 13735322 13735322 G A DNAH5 Silent p.F3893F 0.46 TCGA-YG-AA3O-06 5 138723570 138723570 C T MZB1 Missense_Mutation p.E152K 0.31 deleterious(0.03) possibly_damaging(0.6) TCGA-YG-AA3O-06 5 139267006 139267006 G A NRG2 Missense_Mutation p.P264L 0.14 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 5 140080048 140080048 G A ZMAT2 Translation_Start_Site p.M1? 0.39 deleterious(0.02) benign(0.191) TCGA-YG-AA3O-06 5 140188938 140188938 G A PCDHA4 Silent p.R722R 0.23 TCGA-YG-AA3O-06 5 140222445 140222445 G A PCDHA8 Silent p.E513E 0.35 TCGA-YG-AA3O-06 5 140255585 140255585 G A PCDHA12 Silent p.E176E 0.40 TCGA-YG-AA3O-06 5 140256945 140256945 G A PCDHA12 Missense_Mutation p.E630K 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-YG-AA3O-06 5 140308552 140308552 C T PCDHAC1 Missense_Mutation p.S692F 0.33 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 5 140309005 140309005 C T PCDHAC1 Intron 0.42 TCGA-YG-AA3O-06 5 140431225 140431225 G A PCDHB1 Missense_Mutation p.G57E 0.44 tolerated(0.3) probably_damaging(0.935) TCGA-YG-AA3O-06 5 140474516 140474516 G A PCDHB2 Missense_Mutation p.A48T 0.37 tolerated_low_confidence(0.12) benign(0.119) TCGA-YG-AA3O-06 5 140474984 140474984 C T PCDHB2 Missense_Mutation p.R204C 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-YG-AA3O-06 5 140482368 140482368 G A PCDHB3 Missense_Mutation p.R712Q 0.43 deleterious_low_confidence(0.02) benign(0.142) TCGA-YG-AA3O-06 5 140531767 140531767 G A PCDHB6 Silent p.K643K 0.29 TCGA-YG-AA3O-06 5 140554293 140554293 C T PCDHB7 Missense_Mutation p.T626I 0.15 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-YG-AA3O-06 5 140557960 140557960 C T PCDHB8 Silent p.F115F 0.15 TCGA-YG-AA3O-06 5 140559047 140559047 G A PCDHB8 Missense_Mutation p.D478N 0.11 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-YG-AA3O-06 5 140562251 140562251 G A PCDHB16 Silent p.T39T 0.15 TCGA-YG-AA3O-06 5 140564216 140564216 G A PCDHB16 Silent p.L694L 0.45 TCGA-YG-AA3O-06 5 140573560 140573560 G A PCDHB10 Missense_Mutation p.D479N 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-YG-AA3O-06 5 140574181 140574181 G A PCDHB10 Missense_Mutation p.D686N 0.32 deleterious_low_confidence(0.03) benign(0.299) TCGA-YG-AA3O-06 5 140579343 140579343 G A PCDHB11 5'Flank 0.39 TCGA-YG-AA3O-06 5 140718920 140718920 G A PCDHGA2 Missense_Mutation p.D128N 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YG-AA3O-06 5 141035288 141035288 G A ARAP3 Missense_Mutation p.S1337F 0.39 deleterious(0) probably_damaging(0.985) TCGA-YG-AA3O-06 5 145435734 145435734 G A SH3RF2 Missense_Mutation p.G505R 0.34 tolerated(0.05) benign(0.076) TCGA-YG-AA3O-06 5 145439635 145439635 G A SH3RF2 Missense_Mutation p.G588S 0.23 tolerated(0.14) benign(0.035) TCGA-YG-AA3O-06 5 145602965 145602965 G A RBM27 Splice_Site p.X60_splice 0.49 TCGA-YG-AA3O-06 5 147593518 147593518 G A SPINK6 Missense_Mutation p.E43K 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-YG-AA3O-06 5 147594566 147594566 C T SPINK6 3'UTR 0.41 TCGA-YG-AA3O-06 5 150406548 150406548 G A GPX3 Missense_Mutation p.G110E 0.35 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 151784073 151784073 G A NMUR2 Missense_Mutation p.S201L 0.24 deleterious(0.02) probably_damaging(0.928) TCGA-YG-AA3O-06 5 157075856 157075856 C T SOX30 Missense_Mutation p.R339Q 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 158139220 158139220 G A EBF1 Silent p.S497S 0.31 TCGA-YG-AA3O-06 5 158634962 158634962 T C RNF145 Intron 0.42 TCGA-YG-AA3O-06 5 161277683 161277683 C T GABRA1 Intron 0.45 TCGA-YG-AA3O-06 5 168199865 168199865 G A SLIT3 Silent p.S460S 0.26 TCGA-YG-AA3O-06 5 169096304 169096304 G A DOCK2 Missense_Mutation p.G47E 0.29 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3O-06 5 169812354 169812354 A T KCNMB1 Missense_Mutation p.I33N 0.45 deleterious(0) probably_damaging(0.966) TCGA-YG-AA3O-06 5 17354476 17354476 C T CTD-2139B15.2 RNA 0.30 TCGA-YG-AA3O-06 5 175525493 175525493 C T FAM153B Missense_Mutation p.H80Y 0.16 tolerated_low_confidence(0.07) benign(0.291) TCGA-YG-AA3O-06 5 176026299 176026299 G A GPRIN1 Silent p.P179P 0.37 TCGA-YG-AA3O-06 5 178552090 178552090 C T ADAMTS2 Missense_Mutation p.D948N 0.27 tolerated(0.78) benign(0.02) TCGA-YG-AA3O-06 5 1878371 1878371 C T IRX4 Silent p.L424L 0.58 TCGA-YG-AA3O-06 5 24535848 24535848 G A CDH10 Nonsense_Mutation p.Q204* 0.37 TCGA-YG-AA3O-06 5 26906941 26906941 G A CDH9 Missense_Mutation p.S177F 0.47 tolerated(0.24) benign(0.041) TCGA-YG-AA3O-06 5 33624452 33624452 A G ADAMTS12 Missense_Mutation p.V676A 0.38 deleterious(0) possibly_damaging(0.762) TCGA-YG-AA3O-06 5 33997479 33997479 A G AMACR Intron 0.40 TCGA-YG-AA3O-06 5 35628630 35628630 C T SPEF2 Missense_Mutation p.L43F 0.29 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 37000573 37000573 C T NIPBL Missense_Mutation p.H1135Y 0.33 deleterious_low_confidence(0.04) benign(0.196) TCGA-YG-AA3O-06 5 38338831 38338831 C T EGFLAM Missense_Mutation p.S80F 0.26 tolerated_low_confidence(0.28) benign(0.013) TCGA-YG-AA3O-06 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.37 tolerated(0.36) benign(0.004) TCGA-YG-AA3O-06 5 38869164 38869164 C T OSMR Silent p.V6V 0.36 TCGA-YG-AA3O-06 5 41012693 41012693 C T MROH2B Missense_Mutation p.E1043K 0.40 tolerated(0.29) benign(0.003) TCGA-YG-AA3O-06 5 42801385 42801385 C T SEPP1 Missense_Mutation p.D195N 0.36 tolerated(0.13) benign(0) TCGA-YG-AA3O-06 5 484763 484763 G A SLC9A3 Silent p.F268F 0.40 TCGA-YG-AA3O-06 5 52779380 52779380 G A FST Missense_Mutation p.M108I 0.23 tolerated(0.09) benign(0.01) TCGA-YG-AA3O-06 5 52779399 52779399 C T FST Missense_Mutation p.R115C 0.46 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 5 71752399 71752399 C T ZNF366 Silent p.G452G 0.22 TCGA-YG-AA3O-06 5 73931955 73931955 G A ENC1 Missense_Mutation p.S119L 0.46 tolerated(0.64) benign(0.157) TCGA-YG-AA3O-06 5 75505676 75505676 G T SV2C Missense_Mutation p.A293S 0.50 deleterious(0.01) possibly_damaging(0.667) TCGA-YG-AA3O-06 5 76028685 76028685 C T F2R Missense_Mutation p.S212F 0.44 deleterious(0.01) probably_damaging(0.936) TCGA-YG-AA3O-06 5 76633142 76633142 T A PDE8B Splice_Site p.X266_splice 0.22 TCGA-YG-AA3O-06 5 89949589 89949589 T C GPR98 Missense_Mutation p.Y1400H 0.43 probably_damaging(0.961) TCGA-YG-AA3O-06 5 89977151 89977151 C T GPR98 Silent p.S1848S 0.32 TCGA-YG-AA3O-06 5 89990022 89990022 G A GPR98 Silent p.R2483R 0.29 TCGA-YG-AA3O-06 5 90020922 90020922 C T GPR98 Missense_Mutation p.P3309L 0.44 possibly_damaging(0.908) TCGA-YG-AA3O-06 5 9629272 9629272 G A TAS2R1 Silent p.F291F 0.35 TCGA-YG-AA3O-06 5 9630017 9630017 G A TAS2R1 Missense_Mutation p.P43L 0.31 deleterious(0) possibly_damaging(0.818) TCGA-YG-AA3O-06 6 100838626 100838626 C T SIM1 Missense_Mutation p.G638R 0.35 tolerated_low_confidence(0.51) possibly_damaging(0.617) TCGA-YG-AA3O-06 6 100838748 100838748 C T SIM1 Missense_Mutation p.G597E 0.56 tolerated_low_confidence(0.2) benign(0.11) TCGA-YG-AA3O-06 6 106634447 106634447 G A ATG5 Missense_Mutation p.H266Y 0.17 deleterious(0) probably_damaging(0.97) TCGA-YG-AA3O-06 6 108070910 108070910 C T SCML4 Silent p.L88L 0.40 TCGA-YG-AA3O-06 6 108246108 108246108 A T SEC63 Missense_Mutation p.L85M 0.39 deleterious(0.03) possibly_damaging(0.781) TCGA-YG-AA3O-06 6 112671180 112671180 C T RFPL4B Silent p.L90L 0.32 TCGA-YG-AA3O-06 6 116289807 116289807 C T FRK Missense_Mutation p.E188K 0.25 tolerated(0.08) benign(0.081) TCGA-YG-AA3O-06 6 117650609 117650609 G A ROS1 Missense_Mutation p.A1750V 0.27 deleterious(0.02) benign(0.285) TCGA-YG-AA3O-06 6 117718148 117718148 G A ROS1 Nonsense_Mutation p.Q237* 0.34 TCGA-YG-AA3O-06 6 119509641 119509641 C T MAN1A1 Missense_Mutation p.E550K 0.16 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 6 12131113 12131113 G A HIVEP1 Missense_Mutation p.R2108Q 0.30 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 6 123318964 123318964 G A CLVS2 Silent p.E14E 0.42 TCGA-YG-AA3O-06 6 124979592 124979592 G A NKAIN2 Intron 0.50 TCGA-YG-AA3O-06 6 127476436 127476436 G A RSPO3 Missense_Mutation p.G163R 0.21 tolerated(0.32) probably_damaging(0.989) TCGA-YG-AA3O-06 6 129591875 129591875 C T LAMA2 Missense_Mutation p.P810L 0.32 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3O-06 6 129649444 129649444 C T LAMA2 Nonsense_Mutation p.R1400* 0.54 TCGA-YG-AA3O-06 6 130505248 130505248 G A SAMD3 Silent p.F218F 0.14 TCGA-YG-AA3O-06 6 130762382 130762382 C T TMEM200A Missense_Mutation p.S272F 0.19 tolerated(0.1) benign(0.007) TCGA-YG-AA3O-06 6 131190792 131190792 C T EPB41L2 Missense_Mutation p.E840K 0.56 tolerated(0.06) probably_damaging(0.931) TCGA-YG-AA3O-06 6 132059170 132059170 G A ENPP3 Splice_Site p.X723_splice 0.35 TCGA-YG-AA3O-06 6 132636846 132636846 C T MOXD1 Missense_Mutation p.R479Q 0.49 tolerated(0.06) probably_damaging(0.958) TCGA-YG-AA3O-06 6 133834097 133834097 G A EYA4 Silent p.G474G 0.38 TCGA-YG-AA3O-06 6 136599573 136599573 G A BCLAF1 Missense_Mutation p.P149L 0.22 tolerated_low_confidence(0.38) unknown(0) TCGA-YG-AA3O-06 6 136960763 136960763 C T MAP3K5 Missense_Mutation p.E618K 0.33 deleterious(0.02) benign(0.062) TCGA-YG-AA3O-06 6 137332560 137332560 G A IL20RA Missense_Mutation p.S85L 0.12 tolerated(0.13) possibly_damaging(0.826) TCGA-YG-AA3O-06 6 138645259 138645259 G A KIAA1244 Missense_Mutation p.E1657K 0.23 deleterious(0) possibly_damaging(0.501) TCGA-YG-AA3O-06 6 139564081 139564081 A G TXLNB Missense_Mutation p.L546P 0.55 deleterious_low_confidence(0.01) benign(0.03) TCGA-YG-AA3O-06 6 144110007 144110007 G A PHACTR2 Missense_Mutation p.R602Q 0.57 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 6 146266707 146266707 G A SHPRH Missense_Mutation p.S463F 0.18 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-YG-AA3O-06 6 150240809 150240809 G A RAET1G Silent p.L77L 0.09 TCGA-YG-AA3O-06 6 150343236 150343236 G A RAET1L Silent p.L77L 0.37 TCGA-YG-AA3O-06 6 150710562 150710562 G A IYD Missense_Mutation p.E85K 0.55 tolerated(0.07) benign(0.081) TCGA-YG-AA3O-06 6 152497549 152497549 G A SYNE1 Silent p.L7869L 0.53 TCGA-YG-AA3O-06 6 152772238 152772238 G A SYNE1 Nonsense_Mutation p.R1044* 0.24 TCGA-YG-AA3O-06 6 153019149 153019149 T A MYCT1 Missense_Mutation p.F38I 0.26 tolerated_low_confidence(0.16) probably_damaging(0.978) TCGA-YG-AA3O-06 6 153043051 153043051 G A MYCT1 Missense_Mutation p.G124E 0.25 tolerated(0.08) probably_damaging(1) TCGA-YG-AA3O-06 6 155450611 155450611 T G TIAM2 Missense_Mutation p.V85G 0.33 tolerated_low_confidence(0.54) benign(0) TCGA-YG-AA3O-06 6 157744454 157744454 G A TMEM242 Silent p.F26F 0.23 TCGA-YG-AA3O-06 6 168226489 168226489 G A MLLT4 5'Flank 0.24 TCGA-YG-AA3O-06 6 168464355 168464355 C T FRMD1 Missense_Mutation p.E244K 0.50 deleterious(0.02) benign(0.33) TCGA-YG-AA3O-06 6 168464356 168464356 C T FRMD1 Silent p.K243K 0.52 TCGA-YG-AA3O-06 6 24205365 24205365 C T DCDC2 Intron 0.54 TCGA-YG-AA3O-06 6 25661866 25661866 G A SCGN Missense_Mutation p.M80I 0.34 tolerated(1) benign(0.001) TCGA-YG-AA3O-06 6 28872106 28872106 G A TRIM27 Missense_Mutation p.P428L 0.28 tolerated(0.25) probably_damaging(0.975) TCGA-YG-AA3O-06 6 29364501 29364501 G A OR12D2 Missense_Mutation p.E9K 0.23 deleterious(0.03) benign(0.053) TCGA-YG-AA3O-06 6 29627329 29627329 G A MOG Missense_Mutation p.G108R 0.26 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 6 30671565 30671565 A G MDC1 Missense_Mutation p.F1799L 0.25 tolerated(0.39) benign(0.229) TCGA-YG-AA3O-06 6 30671828 30671828 G A MDC1 Missense_Mutation p.S1711F 0.29 deleterious(0.02) possibly_damaging(0.543) TCGA-YG-AA3O-06 6 31133749 31133749 C T POU5F1 Missense_Mutation p.G161R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-YG-AA3O-06 6 32029364 32029364 G A TNXB Silent p.P2434P 0.47 TCGA-YG-AA3O-06 6 32047041 32047041 C T RNA5SP206 5'Flank 0.51 TCGA-YG-AA3O-06 6 35259140 35259140 G A ZNF76 Silent p.K237K 0.17 TCGA-YG-AA3O-06 6 35705121 35705121 G C ARMC12 Missense_Mutation p.G79A 0.60 tolerated(0.64) benign(0.004) TCGA-YG-AA3O-06 6 35911674 35911674 C G SLC26A8 3'UTR 0.18 TCGA-YG-AA3O-06 6 36287335 36287335 G A C6orf222 Missense_Mutation p.S574F 0.56 deleterious(0) probably_damaging(0.919) TCGA-YG-AA3O-06 6 36296423 36296423 G A C6orf222 Missense_Mutation p.P227S 0.61 tolerated(0.66) probably_damaging(0.932) TCGA-YG-AA3O-06 6 36566687 36566687 C T SRSF3 Missense_Mutation p.R90C 0.21 tolerated(0.1) unknown(0) TCGA-YG-AA3O-06 6 38854693 38854693 C T DNAH8 Nonsense_Mutation p.R2579* 0.24 TCGA-YG-AA3O-06 6 38891888 38891888 C T DNAH8 Missense_Mutation p.P3421S 0.34 probably_damaging(0.973) TCGA-YG-AA3O-06 6 39082830 39082830 C T SAYSD1 Silent p.R12R 0.37 TCGA-YG-AA3O-06 6 39874298 39874298 C T MOCS1 3'UTR 0.60 TCGA-YG-AA3O-06 6 39874299 39874299 C T MOCS1 3'UTR 0.60 TCGA-YG-AA3O-06 6 41533690 41533690 C T FOXP4 Silent p.F64F 0.57 TCGA-YG-AA3O-06 6 42200594 42200594 G A TRERF1 Missense_Mutation p.R1035C 0.31 deleterious(0) possibly_damaging(0.898) TCGA-YG-AA3O-06 6 43097506 43097506 G A PTK7 Missense_Mutation p.E145K 0.29 tolerated(0.88) benign(0.035) TCGA-YG-AA3O-06 6 43167028 43167028 C T CUL9 Silent p.F1025F 0.27 TCGA-YG-AA3O-06 6 46656533 46656533 G A TDRD6 Missense_Mutation p.G223E 0.47 tolerated(0.45) benign(0.005) TCGA-YG-AA3O-06 6 46659211 46659211 C T TDRD6 Nonsense_Mutation p.Q1116* 0.18 TCGA-YG-AA3O-06 6 46801039 46801039 G A MEP1A Missense_Mutation p.R458Q 0.25 tolerated(0.05) probably_damaging(0.975) TCGA-YG-AA3O-06 6 46977511 46977511 C T GPR110 Missense_Mutation p.E554K 0.51 deleterious(0.01) probably_damaging(1) TCGA-YG-AA3O-06 6 46982465 46982465 C T GPR110 Silent p.Q293Q 0.49 TCGA-YG-AA3O-06 6 4716056 4716056 G A CDYL Missense_Mutation p.R15K 0.14 deleterious_low_confidence(0) benign(0) TCGA-YG-AA3O-06 6 49753577 49753577 C T PGK2 3'UTR 0.40 TCGA-YG-AA3O-06 6 52009172 52009172 T G MIR206 RNA 0.20 TCGA-YG-AA3O-06 6 5369055 5369055 C T FARS2 Silent p.H84H 0.47 TCGA-YG-AA3O-06 6 54254719 54254719 C T TINAG Missense_Mutation p.P476L 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YG-AA3O-06 6 55145130 55145130 G A HCRTR2 Silent p.G331G 0.30 TCGA-YG-AA3O-06 6 72113310 72113310 G A MIR30A RNA 0.56 TCGA-YG-AA3O-06 6 7581043 7581043 C T DSP Silent p.I1540I 0.23 TCGA-YG-AA3O-06 6 84233894 84233894 G A PRSS35 Missense_Mutation p.G245E 0.21 tolerated(0.27) probably_damaging(0.935) TCGA-YG-AA3O-06 6 88769219 88769219 G A SPACA1 Missense_Mutation p.E175K 0.50 deleterious(0.01) possibly_damaging(0.477) TCGA-YG-AA3O-06 6 90660157 90660157 G A BACH2 Silent p.F556F 0.23 TCGA-YG-AA3O-06 7 100451964 100451964 C T SLC12A9 Silent p.L49L 0.28 TCGA-YG-AA3O-06 7 100491089 100491089 C T ACHE Silent p.R255R 0.59 TCGA-YG-AA3O-06 7 100682540 100682540 C T MUC17 Missense_Mutation p.P2615S 0.66 possibly_damaging(0.535) TCGA-YG-AA3O-06 7 1015102 1015102 C T COX19 Missense_Mutation p.R15Q 0.20 tolerated(0.26) possibly_damaging(0.463) TCGA-YG-AA3O-06 7 103629672 103629672 C T RELN Silent p.G44G 0.12 TCGA-YG-AA3O-06 7 107621131 107621131 G A LAMB1 Nonsense_Mutation p.R268* 0.68 TCGA-YG-AA3O-06 7 113519424 113519424 G A PPP1R3A Missense_Mutation p.R575W 0.06 tolerated(0.26) benign(0.003) TCGA-YG-AA3O-06 7 113519425 113519425 G A PPP1R3A Silent p.T574T 0.06 TCGA-YG-AA3O-06 7 121695103 121695103 A G PTPRZ1 Missense_Mutation p.K2164E 0.74 tolerated(0.05) benign(0.002) TCGA-YG-AA3O-06 7 123104910 123104910 G A IQUB Missense_Mutation p.P579S 0.74 deleterious(0) possibly_damaging(0.795) TCGA-YG-AA3O-06 7 126882992 126882992 G A GRM8 Silent p.D89D 0.19 TCGA-YG-AA3O-06 7 127254962 127254962 C T PAX4 Missense_Mutation p.G103E 0.18 deleterious(0) probably_damaging(0.992) TCGA-YG-AA3O-06 7 128034581 128034581 G A IMPDH1 Silent p.F541F 0.42 TCGA-YG-AA3O-06 7 131878887 131878887 C T PLXNA4 Silent p.V930V 0.13 TCGA-YG-AA3O-06 7 134893581 134893581 G A WDR91 Missense_Mutation p.S158F 0.18 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 7 135282922 135282922 C T NUP205 Silent p.F747F 0.15 TCGA-YG-AA3O-06 7 137170149 137170149 A T DGKI Missense_Mutation p.S800T 0.68 tolerated(0.6) benign(0.003) TCGA-YG-AA3O-06 7 137792206 137792206 C G AKR1D1 Missense_Mutation p.N245K 0.12 tolerated(1) benign(0.011) TCGA-YG-AA3O-06 7 140453136 140453136 A C BRAF Missense_Mutation p.V600G 0.66 deleterious(0) possibly_damaging(0.497) TCGA-YG-AA3O-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.66 deleterious(0) possibly_damaging(0.838) TCGA-YG-AA3O-06 7 141672620 141672620 G A TAS2R38 Silent p.P290P 0.62 TCGA-YG-AA3O-06 7 141721479 141721479 G A MGAM Missense_Mutation p.E218K 0.16 tolerated(0.19) benign(0.001) TCGA-YG-AA3O-06 7 141731567 141731567 C A MGAM Missense_Mutation p.Q520K 0.17 tolerated(0.46) benign(0.001) TCGA-YG-AA3O-06 7 141768492 141768492 G A MGAM Intron 0.74 TCGA-YG-AA3O-06 7 142139787 142139787 G A TRBV7-6 5'UTR 0.76 TCGA-YG-AA3O-06 7 142612506 142612506 C T TRPV5 Silent p.T419T 0.15 TCGA-YG-AA3O-06 7 142640048 142640048 G A KEL Missense_Mutation p.P619S 0.49 tolerated(0.8) benign(0.015) TCGA-YG-AA3O-06 7 142723548 142723548 G A OR9A2 Silent p.I224I 0.19 TCGA-YG-AA3O-06 7 142723772 142723772 G A OR9A2 Missense_Mutation p.L150F 0.16 tolerated(0.15) benign(0.248) TCGA-YG-AA3O-06 7 142750017 142750017 G A OR6V1 Missense_Mutation p.E194K 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-YG-AA3O-06 7 143002197 143002197 G A CASP2 3'UTR 0.12 TCGA-YG-AA3O-06 7 143053579 143053579 G A FAM131B 3'UTR 0.79 TCGA-YG-AA3O-06 7 143792872 143792872 C T OR2A12 Silent p.I224I 0.21 TCGA-YG-AA3O-06 7 143792897 143792897 C T OR2A12 Missense_Mutation p.R233C 0.18 tolerated(0.09) benign(0.351) TCGA-YG-AA3O-06 7 147092738 147092738 C T CNTNAP2 Silent p.V512V 0.70 TCGA-YG-AA3O-06 7 147869516 147869516 G A CNTNAP2 Missense_Mutation p.G986S 0.20 deleterious(0.02) probably_damaging(0.909) TCGA-YG-AA3O-06 7 148876792 148876792 C T ZNF398 Missense_Mutation p.P610S 0.51 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-YG-AA3O-06 7 149505364 149505364 G A SSPO RNA 0.69 TCGA-YG-AA3O-06 7 150033929 150033929 C T LRRC61 5'UTR 0.76 TCGA-YG-AA3O-06 7 150557556 150557556 C T AOC1 Intron 0.73 TCGA-YG-AA3O-06 7 150883992 150883992 C T ASB10 Missense_Mutation p.D76N 0.12 deleterious(0.04) possibly_damaging(0.876) TCGA-YG-AA3O-06 7 151945171 151945171 G A KMT2C Missense_Mutation p.S783F 0.03 possibly_damaging(0.729) TCGA-YG-AA3O-06 7 151962256 151962256 C T KMT2C Missense_Mutation p.G351R 0.05 probably_damaging(1) TCGA-YG-AA3O-06 7 157959909 157959909 G A PTPRN2 Silent p.S208S 0.25 TCGA-YG-AA3O-06 7 16832576 16832576 C T AGR2 Missense_Mutation p.D162N 0.17 tolerated(0.12) benign(0.002) TCGA-YG-AA3O-06 7 17873692 17873692 G A SNX13 Missense_Mutation p.S527F 0.54 deleterious(0) probably_damaging(0.947) TCGA-YG-AA3O-06 7 18624924 18624924 C T HDAC9 Missense_Mutation p.P15S 0.25 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-YG-AA3O-06 7 18788706 18788706 G A HDAC9 Missense_Mutation p.R663Q 0.62 deleterious(0) probably_damaging(0.994) TCGA-YG-AA3O-06 7 18833039 18833039 C T HDAC9 Silent p.I762I 0.38 TCGA-YG-AA3O-06 7 20434519 20434519 G A ITGB8 Missense_Mutation p.D353N 0.24 tolerated(0.39) possibly_damaging(0.72) TCGA-YG-AA3O-06 7 21813468 21813468 G A DNAH11 Missense_Mutation p.E3070K 0.62 probably_damaging(0.999) TCGA-YG-AA3O-06 7 22347983 22347983 G A RAPGEF5 Missense_Mutation p.P66S 0.29 tolerated(0.42) benign(0.015) TCGA-YG-AA3O-06 7 2581008 2581008 G A BRAT1 Silent p.L415L 0.22 TCGA-YG-AA3O-06 7 27194647 27194647 C T HOXA7 Missense_Mutation p.E192K 0.67 tolerated(0.37) unknown(0) TCGA-YG-AA3O-06 7 27194994 27194994 A C HOXA7 Intron 0.73 TCGA-YG-AA3O-06 7 27209184 27209184 C T RP1-170O19.20 Intron 0.68 TCGA-YG-AA3O-06 7 28547253 28547253 G A CREB5 Silent p.T63T 0.79 TCGA-YG-AA3O-06 7 29103809 29103809 G A CPVL Silent p.L335L 0.60 TCGA-YG-AA3O-06 7 30491988 30491988 G A NOD1 Missense_Mutation p.L349F 0.69 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 7 30496502 30496502 G A NOD1 Silent p.I12I 0.21 TCGA-YG-AA3O-06 7 31855742 31855742 C T PDE1C Missense_Mutation p.E597K 0.68 tolerated(0.17) possibly_damaging(0.872) TCGA-YG-AA3O-06 7 35293120 35293120 T G TBX20 Missense_Mutation p.T38P 0.34 tolerated(0.14) benign(0.004) TCGA-YG-AA3O-06 7 36657936 36657936 C T AOAH Missense_Mutation p.D240N 0.28 tolerated(0.11) probably_damaging(0.999) TCGA-YG-AA3O-06 7 37901650 37901650 G A NME8 Silent p.K97K 0.68 TCGA-YG-AA3O-06 7 43360271 43360271 C T HECW1 Silent p.N130N 0.10 TCGA-YG-AA3O-06 7 43360272 43360272 C T HECW1 Missense_Mutation p.R131C 0.12 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 7 44152322 44152322 G T AEBP1 Nonsense_Mutation p.E795* 0.29 TCGA-YG-AA3O-06 7 44179963 44179963 T C MYL7 Missense_Mutation p.N86S 0.16 deleterious(0.04) benign(0.189) TCGA-YG-AA3O-06 7 44578599 44578599 G A NPC1L1 Missense_Mutation p.S466F 0.57 deleterious(0) possibly_damaging(0.786) TCGA-YG-AA3O-06 7 48318025 48318025 G A ABCA13 Missense_Mutation p.A2412T 0.08 benign(0.09) TCGA-YG-AA3O-06 7 53103403 53103403 G A POM121L12 Silent p.G13G 0.82 TCGA-YG-AA3O-06 7 55493074 55493074 C T LANCL2 Missense_Mutation p.S379F 0.18 tolerated(0.05) possibly_damaging(0.887) TCGA-YG-AA3O-06 7 57188280 57188280 G A ZNF479 Missense_Mutation p.S281F 0.11 tolerated(0.27) probably_damaging(0.957) TCGA-YG-AA3O-06 7 66103977 66103977 C T KCTD7 Silent p.L210L 0.52 TCGA-YG-AA3O-06 7 66458243 66458243 G A SBDS Silent p.I140I 0.52 TCGA-YG-AA3O-06 7 72984922 72984922 G A TBL2 Missense_Mutation p.S420F 0.41 deleterious(0.03) benign(0.008) TCGA-YG-AA3O-06 7 73803475 73803475 C T CLIP2 Missense_Mutation p.A869V 0.39 tolerated(0.12) benign(0.005) TCGA-YG-AA3O-06 7 75187047 75187047 T A HIP1 Missense_Mutation p.M498L 0.57 deleterious(0.02) benign(0.001) TCGA-YG-AA3O-06 7 7530250 7530250 C T COL28A1 Missense_Mutation p.G352S 0.15 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 7 75658011 75658011 G A STYXL1 Silent p.S38S 0.47 TCGA-YG-AA3O-06 7 75686788 75686788 C T MDH2 Missense_Mutation p.P99L 0.23 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 7 7571336 7571336 A C COL28A1 Missense_Mutation p.F108L 0.10 deleterious(0.04) benign(0.02) TCGA-YG-AA3O-06 7 81579718 81579718 C T CACNA2D1 Missense_Mutation p.R1089H 0.45 tolerated_low_confidence(0.58) benign(0) TCGA-YG-AA3O-06 7 82544757 82544757 G A PCLO Missense_Mutation p.A4182V 0.62 unknown(0) TCGA-YG-AA3O-06 7 82579941 82579941 G A PCLO Silent p.D3321D 0.32 TCGA-YG-AA3O-06 7 82784310 82784310 G A PCLO Silent p.P549P 0.28 TCGA-YG-AA3O-06 7 82785564 82785564 G A PCLO Silent p.S131S 0.42 TCGA-YG-AA3O-06 7 87825911 87825911 G A ADAM22 3'Flank 0.31 TCGA-YG-AA3O-06 7 88963881 88963881 G A ZNF804B Missense_Mutation p.E529K 0.17 tolerated(0.13) possibly_damaging(0.531) TCGA-YG-AA3O-06 7 90585121 90585121 C T CDK14 Silent p.C294C 0.16 TCGA-YG-AA3O-06 7 92000892 92000892 G A ANKIB1 Missense_Mutation p.E530K 0.33 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 7 92764356 92764356 A T SAMD9L Missense_Mutation p.I310N 0.57 deleterious(0) probably_damaging(0.937) TCGA-YG-AA3O-06 7 94540428 94540428 G A PPP1R9A Missense_Mutation p.E335K 0.25 tolerated(0.2) benign(0.002) TCGA-YG-AA3O-06 7 94903412 94903412 G A PPP1R9A Silent p.R1076R 0.47 TCGA-YG-AA3O-06 7 99370264 99370264 C T CYP3A4 Missense_Mutation p.M89I 0.44 tolerated(0.8) benign(0.037) TCGA-YG-AA3O-06 7 99997231 99997231 C T PILRA Missense_Mutation p.P262L 0.17 deleterious(0.05) probably_damaging(0.994) TCGA-YG-AA3O-06 8 104427552 104427552 C T DCAF13 Missense_Mutation p.R112C 0.35 deleterious_low_confidence(0) benign(0.193) TCGA-YG-AA3O-06 8 10465241 10465241 C T RP1L1 Missense_Mutation p.G2123R 0.34 unknown(0) TCGA-YG-AA3O-06 8 105361308 105361308 C T DCSTAMP Silent p.F176F 0.39 TCGA-YG-AA3O-06 8 107782125 107782125 G A ABRA Silent p.A98A 0.38 TCGA-YG-AA3O-06 8 107782170 107782170 G A ABRA Silent p.P83P 0.28 TCGA-YG-AA3O-06 8 107782171 107782171 G T ABRA Missense_Mutation p.P83H 0.27 tolerated(0.1) benign(0.004) TCGA-YG-AA3O-06 8 110100411 110100411 C G TRHR Missense_Mutation p.P224A 0.41 tolerated(0.08) benign(0.259) TCGA-YG-AA3O-06 8 110498879 110498879 G A PKHD1L1 Missense_Mutation p.E3237K 0.36 tolerated(0.13) benign(0.004) TCGA-YG-AA3O-06 8 110502246 110502246 G A PKHD1L1 Missense_Mutation p.D3316N 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-YG-AA3O-06 8 110576670 110576670 A G EBAG9 Missense_Mutation p.Q175R 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-YG-AA3O-06 8 11189438 11189438 A G SLC35G5 Missense_Mutation p.T275A 0.05 tolerated(0.1) possibly_damaging(0.794) TCGA-YG-AA3O-06 8 113308111 113308111 C T CSMD3 Silent p.R2855R 0.44 TCGA-YG-AA3O-06 8 113484827 113484827 C T CSMD3 Silent p.K1796K 0.36 TCGA-YG-AA3O-06 8 117862964 117862964 G A RAD21 Missense_Mutation p.P505S 0.32 tolerated(0.17) benign(0.001) TCGA-YG-AA3O-06 8 11994696 11994696 G A USP17L2 Missense_Mutation p.A525V 0.31 tolerated(0.15) benign(0.01) TCGA-YG-AA3O-06 8 120940756 120940756 C T DEPTOR Missense_Mutation p.S80F 0.37 tolerated(0.21) benign(0.025) TCGA-YG-AA3O-06 8 125088516 125088516 C T FER1L6 Silent p.I1390I 0.28 TCGA-YG-AA3O-06 8 125463326 125463326 C G TRMT12 Missense_Mutation p.P53R 0.38 tolerated(0.13) benign(0.024) TCGA-YG-AA3O-06 8 12586825 12586825 G A LONRF1 Missense_Mutation p.P569S 0.30 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 8 130777944 130777946 TTG - GSDMC In_Frame_Del p.N167del 0.19 TCGA-YG-AA3O-06 8 130777994 130777994 C T GSDMC Silent p.R150R 0.43 TCGA-YG-AA3O-06 8 131812722 131812722 C T ADCY8 Missense_Mutation p.G1004R 0.34 deleterious(0.02) probably_damaging(1) TCGA-YG-AA3O-06 8 134050969 134050969 G A SLA Missense_Mutation p.P251S 0.33 tolerated(1) benign(0.004) TCGA-YG-AA3O-06 8 135521981 135521981 C T ZFAT Missense_Mutation p.D1125N 0.36 deleterious(0.02) possibly_damaging(0.838) TCGA-YG-AA3O-06 8 139263137 139263137 C T FAM135B Silent p.V163V 0.36 TCGA-YG-AA3O-06 8 139707083 139707083 G A COL22A1 Silent p.L878L 0.42 TCGA-YG-AA3O-06 8 139707084 139707084 G A COL22A1 Silent p.G877G 0.43 TCGA-YG-AA3O-06 8 145692663 145692663 G A KIFC2 Silent p.G136G 0.46 TCGA-YG-AA3O-06 8 145948716 145948716 G A ZNF251 Missense_Mutation p.S110F 0.50 tolerated(0.07) possibly_damaging(0.485) TCGA-YG-AA3O-06 8 15601060 15601060 C T TUSC3 Silent p.T292T 0.32 TCGA-YG-AA3O-06 8 1719747 1719747 C T CLN8 Missense_Mutation p.S176F 0.39 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 8 17612792 17612792 A G MTUS1 Silent p.H175H 0.27 TCGA-YG-AA3O-06 8 195777 195777 C T ZNF596 Silent p.L310L 0.41 TCGA-YG-AA3O-06 8 2005837 2005837 G A MYOM2 Missense_Mutation p.E167K 0.27 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 8 21955233 21955233 C T FAM160B2 Silent p.L136L 0.69 TCGA-YG-AA3O-06 8 21996162 21996162 G A REEP4 Missense_Mutation p.P233L 0.38 tolerated(0.4) benign(0.001) TCGA-YG-AA3O-06 8 22974668 22974668 C T TNFRSF10C 3'UTR 0.36 TCGA-YG-AA3O-06 8 23177524 23177524 C T LOXL2 Silent p.V448V 0.44 TCGA-YG-AA3O-06 8 23702522 23702522 C T STC1 Missense_Mutation p.E169K 0.31 tolerated(0.29) possibly_damaging(0.5) TCGA-YG-AA3O-06 8 25364822 25364822 C T CDCA2 Silent p.T880T 0.30 TCGA-YG-AA3O-06 8 27295003 27295003 C T PTK2B Missense_Mutation p.P506L 0.38 deleterious(0.05) benign(0.097) TCGA-YG-AA3O-06 8 28573714 28573714 C T EXTL3 Silent p.I46I 0.34 TCGA-YG-AA3O-06 8 3046493 3046493 G A CSMD1 Silent p.I1813I 0.22 TCGA-YG-AA3O-06 8 3267101 3267101 G A CSMD1 Missense_Mutation p.P530S 0.24 probably_damaging(0.999) TCGA-YG-AA3O-06 8 38068082 38068082 C T BAG4 3'UTR 0.29 TCGA-YG-AA3O-06 8 39502935 39502935 G A ADAM18 Missense_Mutation p.D330N 0.27 tolerated(0.16) benign(0.366) TCGA-YG-AA3O-06 8 39502983 39502983 C T ADAM18 Missense_Mutation p.H346Y 0.37 tolerated(0.08) possibly_damaging(0.566) TCGA-YG-AA3O-06 8 43173737 43173737 C T POTEA RNA 0.48 TCGA-YG-AA3O-06 8 54142250 54142250 G A OPRK1 Silent p.I250I 0.47 TCGA-YG-AA3O-06 8 55534695 55534695 G A RP1 Missense_Mutation p.V212M 0.35 tolerated(0.07) possibly_damaging(0.457) TCGA-YG-AA3O-06 8 55538903 55538903 C T RP1 Missense_Mutation p.H821Y 0.33 tolerated(0.08) benign(0.097) TCGA-YG-AA3O-06 8 57079626 57079626 G A PLAG1 Missense_Mutation p.H227Y 0.51 deleterious(0) probably_damaging(0.932) TCGA-YG-AA3O-06 8 61121466 61121466 G A CA8 Nonsense_Mutation p.R251* 0.40 TCGA-YG-AA3O-06 8 66988969 66988969 A C DNAJC5B Missense_Mutation p.N65T 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-YG-AA3O-06 8 67925215 67925215 G A PPP1R42 Missense_Mutation p.P138L 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-YG-AA3O-06 8 69017565 69017565 G A PREX2 Intron 0.39 TCGA-YG-AA3O-06 8 69058471 69058471 G A PREX2 Missense_Mutation p.G1372E 0.31 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3O-06 8 69621309 69621309 C T C8orf34 Missense_Mutation p.S441L 0.48 tolerated(0.18) benign(0.228) TCGA-YG-AA3O-06 8 77617594 77617594 C T ZFHX4 Missense_Mutation p.S424F 0.41 possibly_damaging(0.683) TCGA-YG-AA3O-06 8 77765550 77765550 C T ZFHX4 Silent p.R2131R 0.50 TCGA-YG-AA3O-06 8 77767135 77767135 G A ZFHX4 Missense_Mutation p.E2660K 0.29 probably_damaging(0.979) TCGA-YG-AA3O-06 8 87126018 87126018 G A ATP6V0D2 Missense_Mutation p.D71N 0.34 tolerated(0.47) possibly_damaging(0.889) TCGA-YG-AA3O-06 8 95905131 95905131 C T CCNE2 Missense_Mutation p.E78K 0.36 deleterious(0.02) possibly_damaging(0.624) TCGA-YG-AA3O-06 9 102595827 102595827 C T NR4A3 Intron 0.22 TCGA-YG-AA3O-06 9 105757658 105757658 G A CYLC2 5'UTR 0.27 TCGA-YG-AA3O-06 9 107289213 107289213 G A OR13C4 Missense_Mutation p.S93F 0.46 deleterious(0.03) probably_damaging(0.954) TCGA-YG-AA3O-06 9 107360965 107360965 G A OR13C5 Missense_Mutation p.R244C 0.39 deleterious(0) benign(0.05) TCGA-YG-AA3O-06 9 107456740 107456740 C T OR13D1 Missense_Mutation p.S13L 0.19 tolerated_low_confidence(0.05) unknown(0) TCGA-YG-AA3O-06 9 113173578 113173578 G A SVEP1 Missense_Mutation p.S2138F 0.31 probably_damaging(0.932) TCGA-YG-AA3O-06 9 117788903 117788903 C T TNC Missense_Mutation p.E2081K 0.47 tolerated(0.18) benign(0.012) TCGA-YG-AA3O-06 9 119094624 119094624 C G PAPPA Missense_Mutation p.Q1092E 0.47 deleterious(0.01) benign(0.042) TCGA-YG-AA3O-06 9 120053753 120053753 C T ASTN2 Nonsense_Mutation p.W161* 0.19 TCGA-YG-AA3O-06 9 120475160 120475160 G A TLR4 Missense_Mutation p.G252S 0.32 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 9 123232492 123232492 G A CDK5RAP2 Missense_Mutation p.S622L 0.55 deleterious(0.03) benign(0.063) TCGA-YG-AA3O-06 9 123912569 123912569 C T CNTRL Silent p.P1257P 0.38 TCGA-YG-AA3O-06 9 125330095 125330095 C T OR1L8 Missense_Mutation p.R221Q 0.52 tolerated(0.29) benign(0.076) TCGA-YG-AA3O-06 9 125330655 125330655 G A OR1L8 Silent p.I34I 0.32 TCGA-YG-AA3O-06 9 125391274 125391274 G A OR1B1 Missense_Mutation p.P181S 0.30 deleterious(0.04) possibly_damaging(0.906) TCGA-YG-AA3O-06 9 125391716 125391716 G A OR1B1 Silent p.F33F 0.14 TCGA-YG-AA3O-06 9 126133511 126133511 C G CRB2 Missense_Mutation p.T697R 0.29 tolerated(0.06) possibly_damaging(0.507) TCGA-YG-AA3O-06 9 127999279 127999279 C T HSPA5 Silent p.G519G 0.29 TCGA-YG-AA3O-06 9 129851223 129851223 G T ANGPTL2 Missense_Mutation p.H493N 0.20 deleterious_low_confidence(0.01) benign(0.272) TCGA-YG-AA3O-06 9 131374468 131374468 C T SPTAN1 Silent p.A1662A 0.18 TCGA-YG-AA3O-06 9 131847556 131847556 C T DOLPP1 Silent p.S111S 0.27 TCGA-YG-AA3O-06 9 137688227 137688227 C T COL5A1 Missense_Mutation p.S936F 0.17 unknown(0) TCGA-YG-AA3O-06 9 137688228 137688228 C T COL5A1 Silent p.S936S 0.19 TCGA-YG-AA3O-06 9 137710703 137710703 G A COL5A1 Missense_Mutation p.G1450S 0.52 unknown(0) TCGA-YG-AA3O-06 9 138376379 138376379 C T PPP1R26 Missense_Mutation p.P8L 0.18 deleterious(0) probably_damaging(0.958) TCGA-YG-AA3O-06 9 139733832 139733832 C T RABL6 Missense_Mutation p.S552F 0.50 deleterious_low_confidence(0.02) benign(0.06) TCGA-YG-AA3O-06 9 140055559 140055559 G A GRIN1 Missense_Mutation p.D438N 0.41 tolerated(0.07) benign(0.066) TCGA-YG-AA3O-06 9 140080698 140080698 G A ANAPC2 Missense_Mutation p.S284F 0.29 deleterious(0) probably_damaging(0.996) TCGA-YG-AA3O-06 9 140128931 140128931 C T SLC34A3 Missense_Mutation p.T386I 0.40 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 9 14812864 14812864 C T FREM1 Missense_Mutation p.D947N 0.46 tolerated(0.08) benign(0.036) TCGA-YG-AA3O-06 9 18680402 18680402 G A ADAMTSL1 Missense_Mutation p.G410E 0.20 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3O-06 9 18680403 18680403 G A ADAMTSL1 Silent p.G410G 0.19 TCGA-YG-AA3O-06 9 21077686 21077686 G A IFNB1 Silent p.I61I 0.47 TCGA-YG-AA3O-06 9 21187110 21187110 G A IFNA4 Silent p.L141L 0.37 TCGA-YG-AA3O-06 9 27173333 27173333 G A TEK Missense_Mutation p.G292S 0.27 deleterious(0.03) probably_damaging(1) TCGA-YG-AA3O-06 9 32630557 32630557 G A TAF1L Missense_Mutation p.S1674F 0.34 deleterious_low_confidence(0) benign(0.372) TCGA-YG-AA3O-06 9 32631748 32631748 G A TAF1L Missense_Mutation p.P1277L 0.30 tolerated(0.08) benign(0.411) TCGA-YG-AA3O-06 9 32634338 32634338 C T TAF1L Missense_Mutation p.D414N 0.42 tolerated(0.09) benign(0.199) TCGA-YG-AA3O-06 9 34493301 34493301 G A DNAI1 Missense_Mutation p.R264K 0.53 tolerated(1) benign(0.001) TCGA-YG-AA3O-06 9 35091556 35091556 G A PIGO Silent p.T776T 0.40 TCGA-YG-AA3O-06 9 37489385 37489385 C T POLR1E Missense_Mutation p.P111S 0.16 deleterious(0) probably_damaging(0.961) TCGA-YG-AA3O-06 9 37708409 37708409 C G FRMPD1 Missense_Mutation p.H91Q 0.40 tolerated(0.08) possibly_damaging(0.778) TCGA-YG-AA3O-06 9 40702711 40702711 C T SPATA31A3 Missense_Mutation p.P123L 0.18 tolerated(0.21) probably_damaging(0.958) TCGA-YG-AA3O-06 9 4117931 4117931 T C GLIS3 Missense_Mutation p.E516G 0.17 deleterious(0) probably_damaging(0.995) TCGA-YG-AA3O-06 9 43625489 43625489 C T SPATA31A6 Silent p.Q1066Q 0.22 TCGA-YG-AA3O-06 9 71094430 71094430 G A PGM5 Missense_Mutation p.R419Q 0.36 tolerated(0.28) benign(0.025) TCGA-YG-AA3O-06 9 73151028 73151028 G A TRPM3 Silent p.S1655S 0.28 TCGA-YG-AA3O-06 9 74315641 74315641 G A TMEM2 Silent p.I1098I 0.55 TCGA-YG-AA3O-06 9 74344962 74344962 A T TMEM2 Splice_Site p.X660_splice 0.52 TCGA-YG-AA3O-06 9 75357438 75357438 G A TMC1 Missense_Mutation p.E178K 0.17 deleterious(0) probably_damaging(0.968) TCGA-YG-AA3O-06 9 77416876 77416876 G A TRPM6 Silent p.A649A 0.44 TCGA-YG-AA3O-06 9 78784739 78784739 G A PCSK5 Missense_Mutation p.R580K 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-YG-AA3O-06 9 79259662 79259662 A T PRUNE2 Silent p.S2907S 0.58 TCGA-YG-AA3O-06 9 8375964 8375964 C T PTPRD Missense_Mutation p.D1545N 0.14 deleterious(0) probably_damaging(0.993) TCGA-YG-AA3O-06 9 8436605 8436605 G A PTPRD Missense_Mutation p.S1358F 0.17 deleterious(0) possibly_damaging(0.839) TCGA-YG-AA3O-06 9 86258410 86258410 A T IDNK Silent p.I93I 0.29 TCGA-YG-AA3O-06 9 91150505 91150505 T A NXNL2 Nonsense_Mutation p.Y52* 0.56 TCGA-YG-AA3O-06 9 93650807 93650807 G A SYK Missense_Mutation p.G578E 0.27 deleterious(0) probably_damaging(1) TCGA-YG-AA3O-06 9 95277321 95277321 C T ECM2 Missense_Mutation p.D216N 0.23 tolerated(0.22) benign(0.004) TCGA-YG-AA3O-06 9 95277324 95277324 C T ECM2 Missense_Mutation p.E215K 0.23 tolerated(0.18) benign(0.025) TCGA-YG-AA3O-06 9 95378152 95378152 C A IPPK Nonsense_Mutation p.E480* 0.14 TCGA-YG-AA3O-06 X 101857917 101857918 AA T ARMCX5 Frame_Shift_Del p.K283Ifs*25 0.40 TCGA-YG-AA3O-06 X 105280571 105280571 G C SERPINA7 Missense_Mutation p.S160C 0.73 deleterious(0.01) probably_damaging(0.915) TCGA-YG-AA3O-06 X 114141243 114141243 C T HTR2C Silent p.F214F 0.74 TCGA-YG-AA3O-06 X 114141262 114141262 G A HTR2C Missense_Mutation p.V221I 0.75 tolerated(0.05) benign(0.317) TCGA-YG-AA3O-06 X 115304566 115304566 G A AGTR2 Missense_Mutation p.E345K 0.67 tolerated(0.12) benign(0.002) TCGA-YG-AA3O-06 X 13061362 13061362 C T FAM9C Missense_Mutation p.D23N 0.66 tolerated(0.09) benign(0.006) TCGA-YG-AA3O-06 X 131212902 131212902 C T FRMD7 Silent p.R381R 0.74 TCGA-YG-AA3O-06 X 134990770 134990770 G A SAGE1 Missense_Mutation p.D479N 0.75 tolerated(0.07) probably_damaging(0.995) TCGA-YG-AA3O-06 X 152610308 152610308 C T ZNF275 Intron 0.83 TCGA-YG-AA3O-06 X 153036783 153036783 C T PLXNB3 Nonsense_Mutation p.Q781* 0.71 TCGA-YG-AA3O-06 X 153222123 153222123 G A HCFC1 Missense_Mutation p.S863F 0.79 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-YG-AA3O-06 X 18195770 18195770 C T BEND2 Missense_Mutation p.E517K 0.78 tolerated(0.18) benign(0.173) TCGA-YG-AA3O-06 X 23957435 23957435 A G CXorf58 3'UTR 0.70 TCGA-YG-AA3O-06 X 27997672 27997672 G A DCAF8L1 Nonsense_Mutation p.R594* 0.76 TCGA-YG-AA3O-06 X 308035 308035 G A PPP2R3B Silent p.F217F 0.45 TCGA-YG-AA3O-06 X 37026847 37026847 G A FAM47C Missense_Mutation p.E122K 0.85 deleterious(0) probably_damaging(0.972) TCGA-YG-AA3O-06 X 37027869 37027869 C T FAM47C Silent p.L462L 0.79 TCGA-YG-AA3O-06 X 50056917 50056917 C T CCNB3 Missense_Mutation p.A1162V 0.70 deleterious(0.03) possibly_damaging(0.893) TCGA-YG-AA3O-06 X 50653869 50653869 G A BMP15 Missense_Mutation p.G29E 0.58 tolerated(0.37) benign(0.045) TCGA-YG-AA3O-06 X 52893882 52893882 C T XAGE3 Missense_Mutation p.G79R 0.68 deleterious(0) probably_damaging(0.997) TCGA-YG-AA3O-06 X 55650807 55650807 C T FOXR2 Silent p.F221F 0.79 TCGA-YG-AA3O-06 X 65392374 65392374 G A HEPH Silent p.L169L 0.86 TCGA-YG-AA3O-06 X 70146867 70146867 C T SLC7A3 Silent p.K437K 0.83 TCGA-YG-AA3O-06 X 75004086 75004086 C T MAGEE2 Silent p.L267L 0.82 TCGA-YG-AA3P-06 10 134628355 134628355 C T TTC40 Missense_Mutation p.G2394D 0.28 tolerated(0.08) possibly_damaging(0.55) TCGA-YG-AA3P-06 10 76603090 76603090 G T KAT6B Missense_Mutation p.A159S 0.33 probably_damaging(0.999) TCGA-YG-AA3P-06 11 26621228 26621228 T C ANO3 Silent p.C601C 0.44 TCGA-YG-AA3P-06 11 5246706 5246706 T A HBB 3'UTR 0.24 TCGA-YG-AA3P-06 11 56000589 56000589 T A OR5T2 Missense_Mutation p.N25Y 0.53 tolerated_low_confidence(0.1) benign(0.032) TCGA-YG-AA3P-06 11 5878442 5878442 G C OR52E8 Missense_Mutation p.P164R 0.44 deleterious(0) probably_damaging(1) TCGA-YG-AA3P-06 11 66099948 66099948 C A RIN1 Missense_Mutation p.E717D 0.87 tolerated_low_confidence(0.49) benign(0.002) TCGA-YG-AA3P-06 11 66240762 66240762 C T PELI3 Silent p.S169S 0.46 TCGA-YG-AA3P-06 11 67259690 67259691 - G PITPNM1 Frame_Shift_Ins p.R1184Efs*36 0.12 TCGA-YG-AA3P-06 11 68748141 68748141 C T MRGPRD Missense_Mutation p.M105I 0.04 deleterious(0) benign(0.016) TCGA-YG-AA3P-06 11 70194426 70194426 C T PPFIA1 Missense_Mutation p.S688L 0.46 deleterious(0.02) possibly_damaging(0.552) TCGA-YG-AA3P-06 12 16507224 16507224 T G MGST1 Missense_Mutation p.F13C 0.40 deleterious(0) probably_damaging(0.926) TCGA-YG-AA3P-06 13 33250010 33250010 T G PDS5B Silent p.V292V 0.56 TCGA-YG-AA3P-06 13 76432182 76432182 T A LMO7 3'UTR 0.71 TCGA-YG-AA3P-06 14 94756848 94756848 G A SERPINA10 Missense_Mutation p.S28L 0.50 tolerated(0.25) benign(0.152) TCGA-YG-AA3P-06 14 95571434 95571434 T C DICER1 Silent p.G1081G 0.39 TCGA-YG-AA3P-06 15 100695385 100695385 T G ADAMTS17 Missense_Mutation p.K441T 0.44 deleterious(0.03) possibly_damaging(0.774) TCGA-YG-AA3P-06 15 22369464 22369464 A C OR4M2 Missense_Mutation p.K297Q 0.12 tolerated(0.1) possibly_damaging(0.719) TCGA-YG-AA3P-06 15 24921967 24921967 C T NPAP1 Missense_Mutation p.P318L 0.45 tolerated(1) benign(0.128) TCGA-YG-AA3P-06 15 37184225 37184225 G C MEIS2 3'UTR 0.39 TCGA-YG-AA3P-06 15 75198995 75198995 G T FAM219B Silent p.T49T 0.73 TCGA-YG-AA3P-06 16 23698817 23698817 C T PLK1 Missense_Mutation p.P355L 0.24 tolerated(0.1) benign(0.003) TCGA-YG-AA3P-06 16 87369777 87369777 A T FBXO31 Missense_Mutation p.Y276N 0.48 tolerated(0.13) probably_damaging(0.98) TCGA-YG-AA3P-06 17 11593722 11593722 G T DNAH9 Missense_Mutation p.G1528V 0.57 probably_damaging(0.961) TCGA-YG-AA3P-06 17 29552152 29552152 G A NF1 Missense_Mutation p.G629R 1.00 tolerated_low_confidence(0.07) benign(0.003) TCGA-YG-AA3P-06 17 3629332 3629332 C T GSG2 Silent p.F701F 0.41 TCGA-YG-AA3P-06 17 3974012 3974012 G A ZZEF1 Silent p.R1347R 0.18 TCGA-YG-AA3P-06 17 4883097 4883097 G T CAMTA2 Missense_Mutation p.P530Q 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-YG-AA3P-06 17 67280208 67280208 A C ABCA5 Missense_Mutation p.F760V 0.32 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3P-06 17 71410815 71410815 G T SDK2 Missense_Mutation p.Q818K 0.40 deleterious(0) probably_damaging(0.932) TCGA-YG-AA3P-06 17 79478371 79478371 C T ACTG1 Silent p.K215K 0.31 TCGA-YG-AA3P-06 18 33783114 33783114 C T MOCOS Missense_Mutation p.A327V 0.15 deleterious(0) probably_damaging(0.998) TCGA-YG-AA3P-06 19 12963198 12963198 G A MAST1 Missense_Mutation p.D356N 0.32 deleterious(0.01) benign(0.265) TCGA-YG-AA3P-06 19 14706088 14706088 G C CLEC17A Missense_Mutation p.V136L 0.19 tolerated(0.2) benign(0.034) TCGA-YG-AA3P-06 19 16594911 16594911 G A CALR3 Missense_Mutation p.H170Y 0.34 deleterious(0) probably_damaging(0.984) TCGA-YG-AA3P-06 19 50482281 50482281 G T VRK3 Intron 0.73 TCGA-YG-AA3P-06 19 51329184 51329184 C A KLK15 Silent p.L213L 0.29 TCGA-YG-AA3P-06 19 52919279 52919279 C T ZNF528 Missense_Mutation p.R392C 0.21 tolerated(0.2) possibly_damaging(0.845) TCGA-YG-AA3P-06 19 53644077 53644077 A T ZNF347 Silent p.L669L 0.29 TCGA-YG-AA3P-06 19 55147917 55147917 G A AC009892.10 Intron 0.62 TCGA-YG-AA3P-06 19 55179401 55179401 G A LILRB4 Silent p.E426E 0.32 TCGA-YG-AA3P-06 19 55424209 55424209 C A NCR1 Silent p.G295G 0.29 TCGA-YG-AA3P-06 19 56300273 56300273 G C NLRP11 Missense_Mutation p.L919V 0.67 deleterious(0.01) probably_damaging(0.994) TCGA-YG-AA3P-06 1 110128917 110128917 T G GNAI3 Missense_Mutation p.C224G 0.27 deleterious(0) probably_damaging(0.923) TCGA-YG-AA3P-06 1 117491987 117491987 C T PTGFRN Missense_Mutation p.R336C 0.60 deleterious(0) possibly_damaging(0.863) TCGA-YG-AA3P-06 1 156622658 156622658 G T BCAN Missense_Mutation p.G639V 0.16 tolerated(0.06) probably_damaging(1) TCGA-YG-AA3P-06 1 196920127 196920127 C A CFHR2 Silent p.G133G 0.16 TCGA-YG-AA3P-06 1 21039984 21039984 C T KIF17 Missense_Mutation p.R148Q 0.24 deleterious(0) probably_damaging(0.95) TCGA-YG-AA3P-06 1 24083594 24083594 C A TCEB3 Missense_Mutation p.P772T 0.36 tolerated(0.07) benign(0.127) TCGA-YG-AA3P-06 1 248039835 248039835 G T TRIM58 3'UTR 0.25 TCGA-YG-AA3P-06 1 47075781 47075781 T C MOB3C Missense_Mutation p.S224G 0.24 tolerated(0.15) benign(0.015) TCGA-YG-AA3P-06 1 6585883 6585883 A T NOL9 3'UTR 0.30 TCGA-YG-AA3P-06 1 77558072 77558072 T G PIGK Missense_Mutation p.K392T 0.67 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-YG-AA3P-06 1 9305346 9305346 A G H6PD Missense_Mutation p.Q118R 0.26 tolerated(0.52) benign(0.005) TCGA-YG-AA3P-06 20 34288855 34288855 T C ROMO1 3'UTR 0.20 TCGA-YG-AA3P-06 20 44574740 44574740 C T PCIF1 Missense_Mutation p.L472F 0.65 deleterious(0.04) probably_damaging(0.967) TCGA-YG-AA3P-06 20 55208559 55208559 A C TFAP2C Missense_Mutation p.E246A 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-YG-AA3P-06 20 61292522 61292522 G T SLCO4A1 Silent p.L372L 0.10 TCGA-YG-AA3P-06 22 22682110 22682110 G A IGLV1-50 Missense_Mutation p.G98R 0.46 deleterious_low_confidence(0) benign(0.397) TCGA-YG-AA3P-06 2 27717281 27717281 C T FNDC4 Silent p.S62S 0.26 TCGA-YG-AA3P-06 2 87016465 87016481 GATAACCAGTGACAGGA - CD8A Frame_Shift_Del p.L197Hfs*46 0.20 TCGA-YG-AA3P-06 3 111685499 111685499 G C PHLDB2 Missense_Mutation p.E1039D 0.46 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3P-06 3 142098923 142098923 C A XRN1 Splice_Site p.X905_splice 0.25 TCGA-YG-AA3P-06 3 183823111 183823111 C T HTR3E Missense_Mutation p.R232W 0.44 tolerated(0.06) benign(0.021) TCGA-YG-AA3P-06 3 193183824 193183824 A C ATP13A4 Missense_Mutation p.V421G 0.51 deleterious(0.02) possibly_damaging(0.622) TCGA-YG-AA3P-06 3 48616695 48616695 G A COL7A1 Missense_Mutation p.P1775S 0.17 unknown(0) TCGA-YG-AA3P-06 3 56653490 56653490 A T CCDC66 Missense_Mutation p.Y857F 0.38 deleterious(0.01) possibly_damaging(0.812) TCGA-YG-AA3P-06 3 58149077 58149077 C T FLNB Intron 0.25 TCGA-YG-AA3P-06 4 104579523 104579523 A T TACR3 Missense_Mutation p.S196T 0.37 deleterious(0.03) probably_damaging(0.951) TCGA-YG-AA3P-06 4 111542355 111542355 C A PITX2 Missense_Mutation p.A126S 0.27 tolerated(0.19) probably_damaging(1) TCGA-YG-AA3P-06 4 166978457 166978457 T C TLL1 Silent p.C614C 0.26 TCGA-YG-AA3P-06 4 36160427 36160427 T C ARAP2 Missense_Mutation p.T893A 0.10 tolerated(0.06) benign(0.155) TCGA-YG-AA3P-06 4 55594221 55594221 A G KIT Missense_Mutation p.K642E 0.50 deleterious(0) probably_damaging(1) TCGA-YG-AA3P-06 4 69535686 69535686 A T UGT2B15 Missense_Mutation p.H217Q 0.41 tolerated(0.11) benign(0.015) TCGA-YG-AA3P-06 5 121787174 121787174 A C SNCAIP Missense_Mutation p.N878H 0.19 deleterious(0) possibly_damaging(0.866) TCGA-YG-AA3P-06 5 1232362 1232362 G A SLC6A18 Silent p.A63A 0.29 TCGA-YG-AA3P-06 5 125891649 125891649 T C ALDH7A1 Missense_Mutation p.Q356R 0.52 deleterious(0.02) benign(0.351) TCGA-YG-AA3P-06 5 140167228 140167228 C T PCDHA1 Silent p.N451N 0.23 TCGA-YG-AA3P-06 5 40852505 40852505 T C CARD6 Silent p.D357D 0.26 TCGA-YG-AA3P-06 5 68695907 68695907 T G RAD17 Missense_Mutation p.L546R 0.23 deleterious(0) probably_damaging(0.999) TCGA-YG-AA3P-06 6 117198535 117198535 C T RFX6 Silent p.L33L 0.50 TCGA-YG-AA3P-06 6 117665240 117665240 A G ROS1 Silent p.L1503L 0.89 TCGA-YG-AA3P-06 6 117681564 117681564 C G ROS1 Missense_Mutation p.R1129T 0.61 deleterious(0.01) benign(0.444) TCGA-YG-AA3P-06 6 122766318 122766318 T C SERINC1 Silent p.E411E 0.96 TCGA-YG-AA3P-06 6 153332760 153332760 T C RGS17 Silent p.Q194Q 0.90 TCGA-YG-AA3P-06 6 47976578 47976578 G T PTCHD4 Silent p.A233A 0.11 TCGA-YG-AA3P-06 7 121653257 121653257 C T PTPRZ1 Missense_Mutation p.S1386F 0.24 tolerated_low_confidence(0.22) benign(0.099) TCGA-YG-AA3P-06 7 142641752 142641752 G T KEL Missense_Mutation p.T464N 0.61 deleterious(0) possibly_damaging(0.833) TCGA-YG-AA3P-06 7 148515182 148515182 G A EZH2 Missense_Mutation p.L343F 0.33 tolerated(0.26) benign(0.008) TCGA-YG-AA3P-06 7 149557962 149557962 C T ZNF862 Silent p.P571P 0.10 TCGA-YG-AA3P-06 7 150556133 150556133 C A AOC1 Missense_Mutation p.A618E 0.71 deleterious(0.03) probably_damaging(0.997) TCGA-YG-AA3P-06 7 150935371 150935371 G A CHPF2 Silent p.G641G 0.18 TCGA-YG-AA3P-06 7 27194517 27194517 G A HOXA7 3'UTR 0.24 TCGA-YG-AA3P-06 7 31683052 31683052 G T CCDC129 Missense_Mutation p.G716W 0.15 deleterious(0.05) benign(0.002) TCGA-YG-AA3P-06 7 82582716 82582716 T C PCLO Missense_Mutation p.Q2518R 0.71 unknown(0) TCGA-YG-AA3P-06 8 110576775 110576775 T C EBAG9 Missense_Mutation p.V210A 0.04 tolerated(0.13) possibly_damaging(0.908) TCGA-YG-AA3P-06 8 113236903 113236903 C T CSMD3 3'UTR 0.17 TCGA-YG-AA3P-06 8 120430495 120430495 A G NOV Missense_Mutation p.K170E 0.15 tolerated(1) possibly_damaging(0.803) TCGA-YG-AA3P-06 8 97156741 97156741 C T GDF6 3'UTR 0.19 TCGA-YG-AA3P-06 9 99581056 99581056 T G ZNF782 Missense_Mutation p.T417P 0.47 deleterious(0.03) probably_damaging(0.983) TCGA-YG-AA3P-06 X 53105853 53105854 - A GPR173 Frame_Shift_Ins p.P18Tfs*23 0.51 TCGA-Z2-A8RT-06 10 100159886 100159886 G A PYROXD2 Silent p.I148I 0.28 TCGA-Z2-A8RT-06 10 100177448 100177448 G A HPS1 Missense_Mutation p.T659I 0.45 deleterious(0.01) benign(0.088) TCGA-Z2-A8RT-06 10 101136848 101136848 G T CNNM1 Missense_Mutation p.R738L 0.43 deleterious(0.04) possibly_damaging(0.654) TCGA-Z2-A8RT-06 10 101802261 101802261 C T CPN1 Missense_Mutation p.G434R 0.31 tolerated(0.1) benign(0.004) TCGA-Z2-A8RT-06 10 102295872 102295872 G A HIF1AN Missense_Mutation p.E53K 0.27 tolerated(0.39) benign(0.083) TCGA-Z2-A8RT-06 10 102505889 102505889 C T PAX2 5'UTR 0.23 TCGA-Z2-A8RT-06 10 102789962 102789962 G A PDZD7 Silent p.F5F 0.53 TCGA-Z2-A8RT-06 10 102822854 102822854 G A KAZALD1 Missense_Mutation p.E169K 0.29 tolerated(0.14) benign(0.079) TCGA-Z2-A8RT-06 10 103344366 103344366 G A POLL Missense_Mutation p.S295L 0.28 deleterious(0) probably_damaging(0.917) TCGA-Z2-A8RT-06 10 103912053 103912053 C T NOLC1 5'UTR 0.26 TCGA-Z2-A8RT-06 10 1046703 1046703 C T GTPBP4 Silent p.L247L 0.42 TCGA-Z2-A8RT-06 10 104679589 104679589 C T CNNM2 Missense_Mutation p.T451I 0.38 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 10 105362019 105362019 G A SH3PXD2A Missense_Mutation p.P958S 0.32 deleterious(0.03) possibly_damaging(0.492) TCGA-Z2-A8RT-06 10 105362128 105362128 G A SH3PXD2A Silent p.I921I 0.36 TCGA-Z2-A8RT-06 10 106136585 106136585 G A CCDC147 Silent p.K369K 0.28 TCGA-Z2-A8RT-06 10 106207462 106207462 G A CCDC147 Missense_Mutation p.E755K 0.40 deleterious(0) probably_damaging(0.977) TCGA-Z2-A8RT-06 10 106675686 106675686 G A SORCS3 Missense_Mutation p.R264K 0.39 tolerated(0.14) benign(0.354) TCGA-Z2-A8RT-06 10 106849535 106849535 C T SORCS3 Missense_Mutation p.S344L 0.40 deleterious(0) probably_damaging(0.941) TCGA-Z2-A8RT-06 10 107015520 107015520 G A SORCS3 Missense_Mutation p.G1100R 0.37 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 10 112352962 112352962 G T SMC3 Missense_Mutation p.M648I 0.33 deleterious(0.03) benign(0.105) TCGA-Z2-A8RT-06 10 114158670 114158670 G A ACSL5 Silent p.R112R 0.44 TCGA-Z2-A8RT-06 10 115355423 115355423 C T NRAP Missense_Mutation p.D1499N 0.30 deleterious(0) possibly_damaging(0.904) TCGA-Z2-A8RT-06 10 115357773 115357773 G A NRAP Silent p.S1429S 0.33 TCGA-Z2-A8RT-06 10 115973296 115973296 G A TDRD1 Missense_Mutation p.G675R 0.42 tolerated(0.31) possibly_damaging(0.696) TCGA-Z2-A8RT-06 10 116418029 116418029 C T ABLIM1 5'UTR 0.48 TCGA-Z2-A8RT-06 10 118434777 118434777 G A HSPA12A Missense_Mutation p.L515F 0.34 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 10 118969216 118969216 G A KCNK18 Silent p.K187K 0.35 TCGA-Z2-A8RT-06 10 11911569 11911569 C T PROSER2 Missense_Mutation p.L158F 0.30 tolerated(0.72) benign(0.014) TCGA-Z2-A8RT-06 10 120817683 120817683 G A EIF3A Nonsense_Mutation p.Q588* 0.40 TCGA-Z2-A8RT-06 10 123298225 123298225 C T FGFR2 Missense_Mutation p.R210Q 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-Z2-A8RT-06 10 123843593 123843593 C T TACC2 Silent p.V526V 0.41 TCGA-Z2-A8RT-06 10 123845785 123845785 C T TACC2 Missense_Mutation p.S1257F 0.40 benign(0.21) TCGA-Z2-A8RT-06 10 123846464 123846464 G A TACC2 Silent p.E1483E 0.22 TCGA-Z2-A8RT-06 10 124008639 124008639 C T TACC2 Silent p.A2876A 0.90 TCGA-Z2-A8RT-06 10 124249124 124249124 C T HTRA1 Silent p.L253L 0.44 TCGA-Z2-A8RT-06 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.30 tolerated(0.27) benign(0.011) TCGA-Z2-A8RT-06 10 126463246 126463246 T C METTL10 Missense_Mutation p.K133E 0.30 tolerated(0.47) benign(0.212) TCGA-Z2-A8RT-06 10 127414400 127414400 C T EDRF1 Missense_Mutation p.S262F 0.37 deleterious(0.02) possibly_damaging(0.718) TCGA-Z2-A8RT-06 10 127414401 127414401 C T EDRF1 Silent p.S262S 0.35 TCGA-Z2-A8RT-06 10 127464272 127464272 G A MMP21 Missense_Mutation p.P40L 0.49 tolerated(0.77) benign(0.002) TCGA-Z2-A8RT-06 10 127530379 127530379 C T DHX32 Silent p.K492K 0.36 TCGA-Z2-A8RT-06 10 12856267 12856267 G A CAMK1D Missense_Mutation p.E239K 0.39 deleterious(0) probably_damaging(0.974) TCGA-Z2-A8RT-06 10 129245752 129245752 G A DOCK1 Missense_Mutation p.M1815I 0.57 tolerated(0.53) benign(0.03) TCGA-Z2-A8RT-06 10 129869092 129869092 C T PTPRE Silent p.I438I 0.28 TCGA-Z2-A8RT-06 10 131334605 131334605 A T MGMT Missense_Mutation p.E61V 0.42 tolerated(0.24) possibly_damaging(0.735) TCGA-Z2-A8RT-06 10 13217627 13217627 C T MCM10 Missense_Mutation p.S238F 0.38 deleterious(0.04) benign(0.021) TCGA-Z2-A8RT-06 10 13325785 13325785 G A PHYH Missense_Mutation p.R245W 0.38 deleterious(0) benign(0.373) TCGA-Z2-A8RT-06 10 13380730 13380730 G A SEPHS1 Missense_Mutation p.P91L 0.43 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 10 134218360 134218360 C T PWWP2B Missense_Mutation p.P119L 0.31 tolerated(1) probably_damaging(0.998) TCGA-Z2-A8RT-06 10 134622152 134622152 G A TTC40 Missense_Mutation p.P2641S 0.37 tolerated_low_confidence(0.29) possibly_damaging(0.803) TCGA-Z2-A8RT-06 10 134660451 134660451 G A TTC40 Silent p.F2084F 0.44 TCGA-Z2-A8RT-06 10 134895264 134895264 G A GPR123-AS1 3'Flank 0.60 TCGA-Z2-A8RT-06 10 135165946 135165946 G A PRAP1 3'UTR 0.34 TCGA-Z2-A8RT-06 10 13534641 13534641 G A BEND7 Silent p.F217F 0.34 TCGA-Z2-A8RT-06 10 135440208 135440208 G A FRG2B Silent p.S13S 0.10 TCGA-Z2-A8RT-06 10 13712466 13712466 A G FRMD4A Silent p.V438V 0.46 TCGA-Z2-A8RT-06 10 14862033 14862033 G A CDNF Silent p.L170L 0.42 TCGA-Z2-A8RT-06 10 14862077 14862077 C T CDNF Missense_Mutation p.E156K 0.36 deleterious(0) possibly_damaging(0.84) TCGA-Z2-A8RT-06 10 15138717 15138717 G A C10orf111 Missense_Mutation p.P36L 0.41 deleterious_low_confidence(0.03) unknown(0) TCGA-Z2-A8RT-06 10 15649691 15649691 G A ITGA8 Silent p.F583F 0.36 TCGA-Z2-A8RT-06 10 1569059 1569059 C T ADARB2 Intron 0.42 TCGA-Z2-A8RT-06 10 18828212 18828212 C T CACNB2 Silent p.S514S 0.43 TCGA-Z2-A8RT-06 10 21250607 21250607 G A NEBL Silent p.I83I 0.29 TCGA-Z2-A8RT-06 10 24835139 24835139 G A KIAA1217 Silent p.L1906L 0.45 TCGA-Z2-A8RT-06 10 24959259 24959259 G A ARHGAP21 Missense_Mutation p.S44F 0.39 deleterious(0.02) possibly_damaging(0.665) TCGA-Z2-A8RT-06 10 25684866 25684866 C T GPR158 Silent p.F345F 0.31 TCGA-Z2-A8RT-06 10 25888303 25888303 A T GPR158 3'UTR 0.43 TCGA-Z2-A8RT-06 10 26312960 26312960 C T MYO3A Silent p.P247P 0.32 TCGA-Z2-A8RT-06 10 26312961 26312961 C T MYO3A Missense_Mutation p.P248S 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-Z2-A8RT-06 10 26315420 26315420 C T MYO3A Silent p.F304F 0.33 TCGA-Z2-A8RT-06 10 26355942 26355942 G A MYO3A Missense_Mutation p.R331Q 0.38 deleterious(0.03) benign(0.001) TCGA-Z2-A8RT-06 10 26417388 26417388 C T MYO3A Missense_Mutation p.S728F 0.43 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 10 26462973 26462973 G A MYO3A Silent p.R1260R 0.31 TCGA-Z2-A8RT-06 10 26500841 26500841 G A MYO3A Silent p.R1600R 0.22 TCGA-Z2-A8RT-06 10 26589779 26589779 C T GAD2 Silent p.P549P 0.31 TCGA-Z2-A8RT-06 10 26792174 26792174 G A APBB1IP Missense_Mutation p.E168K 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-Z2-A8RT-06 10 27335440 27335440 G T ANKRD26 Silent p.A609A 0.39 TCGA-Z2-A8RT-06 10 27335441 27335441 G A ANKRD26 Missense_Mutation p.A609V 0.40 tolerated(0.05) benign(0.173) TCGA-Z2-A8RT-06 10 27537846 27537846 C T RP11-85G18.6 Intron 0.38 TCGA-Z2-A8RT-06 10 27687287 27687287 G A PTCHD3 Missense_Mutation p.S747F 0.31 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 10 27687288 27687288 A C PTCHD3 Missense_Mutation p.S747A 0.31 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 10 27687670 27687670 C T PTCHD3 Silent p.G619G 0.30 TCGA-Z2-A8RT-06 10 27702531 27702531 T G PTCHD3 Missense_Mutation p.S217R 0.46 tolerated(0.25) benign(0.06) TCGA-Z2-A8RT-06 10 28225687 28225687 C T ARMC4 Nonsense_Mutation p.W740* 0.35 TCGA-Z2-A8RT-06 10 28408582 28408582 G A MPP7 Missense_Mutation p.S317L 0.41 tolerated(0.69) benign(0.002) TCGA-Z2-A8RT-06 10 31815698 31815698 C T ZEB1 Nonsense_Mutation p.Q962* 0.46 TCGA-Z2-A8RT-06 10 32326534 32326534 C T KIF5B Missense_Mutation p.G167E 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 10 33143334 33143334 C T C10ORF68 Missense_Mutation p.S586L 0.40 tolerated(0.13) possibly_damaging(0.793) TCGA-Z2-A8RT-06 10 37425553 37425553 G A ANKRD30A Missense_Mutation p.M202I 0.41 tolerated(0.25) benign(0.007) TCGA-Z2-A8RT-06 10 37433955 37433955 G A ANKRD30A Missense_Mutation p.E420K 0.43 tolerated(0.11) possibly_damaging(0.636) TCGA-Z2-A8RT-06 10 37451602 37451602 C T ANKRD30A Silent p.F586F 0.26 TCGA-Z2-A8RT-06 10 37508022 37508022 A C ANKRD30A Missense_Mutation p.K1072Q 0.37 deleterious(0) possibly_damaging(0.788) TCGA-Z2-A8RT-06 10 38121914 38121914 G A ZNF248 Silent p.F123F 0.29 TCGA-Z2-A8RT-06 10 38260639 38260639 G A ZNF25 Silent p.F4F 0.36 TCGA-Z2-A8RT-06 10 43315990 43315990 T A BMS1 Missense_Mutation p.I935N 0.37 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 10 43620389 43620389 G A RET Missense_Mutation p.D1000N 0.39 tolerated(0.09) benign(0.066) TCGA-Z2-A8RT-06 10 44871439 44871439 C T CXCL12 3'Flank 0.37 TCGA-Z2-A8RT-06 10 45907730 45907730 G A ALOX5 Missense_Mutation p.G175R 0.37 tolerated(0.3) possibly_damaging(0.73) TCGA-Z2-A8RT-06 10 45907731 45907731 G A ALOX5 Missense_Mutation p.G175E 0.39 tolerated(0.3) benign(0.055) TCGA-Z2-A8RT-06 10 48371079 48371079 G A ZNF488 Missense_Mutation p.G183R 0.44 tolerated(0.1) benign(0.088) TCGA-Z2-A8RT-06 10 48389863 48389863 C T RBP3 Missense_Mutation p.D339N 0.56 tolerated(0.43) possibly_damaging(0.496) TCGA-Z2-A8RT-06 10 48390583 48390583 G A RBP3 Missense_Mutation p.P99S 0.38 deleterious(0.02) possibly_damaging(0.906) TCGA-Z2-A8RT-06 10 49381000 49381000 G A FRMPD2 Missense_Mutation p.S1071L 0.39 tolerated(0.48) benign(0.085) TCGA-Z2-A8RT-06 10 49388972 49388972 G A FRMPD2 Silent p.F888F 0.33 TCGA-Z2-A8RT-06 10 49654538 49654538 C T ARHGAP22 Missense_Mutation p.D681N 0.38 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 10 49791079 49791079 C T ARHGAP22 Missense_Mutation p.M51I 0.35 deleterious(0.02) benign(0.176) TCGA-Z2-A8RT-06 10 50122030 50122030 A T LRRC18 Silent p.L57L 0.47 TCGA-Z2-A8RT-06 10 5045973 5045973 G A AKR1C2 Silent p.L19L 0.23 TCGA-Z2-A8RT-06 10 5045974 5045974 G A AKR1C2 Silent p.V18V 0.23 TCGA-Z2-A8RT-06 10 50690782 50690782 A G ERCC6 Missense_Mutation p.F707S 0.35 deleterious(0) possibly_damaging(0.808) TCGA-Z2-A8RT-06 10 50732687 50732687 G A ERCC6-PGBD3 Silent p.I263I 0.33 TCGA-Z2-A8RT-06 10 50955183 50955183 G A OGDHL Silent p.I353I 0.42 TCGA-Z2-A8RT-06 10 51585237 51585237 C T NCOA4 Missense_Mutation p.P462S 0.40 tolerated(0.12) benign(0.293) TCGA-Z2-A8RT-06 10 51585238 51585238 C G NCOA4 Missense_Mutation p.P462R 0.39 deleterious(0.04) possibly_damaging(0.59) TCGA-Z2-A8RT-06 10 51769587 51769587 C T AGAP6 Missense_Mutation p.R568C 0.25 deleterious(0.02) benign(0.077) TCGA-Z2-A8RT-06 10 5203710 5203710 C T AKR1CL1 Intron 0.39 TCGA-Z2-A8RT-06 10 52103391 52103391 G A SGMS1 Missense_Mutation p.P162S 0.38 tolerated(0.61) benign(0.02) TCGA-Z2-A8RT-06 10 52103908 52103908 C T SGMS1 5'UTR 0.36 TCGA-Z2-A8RT-06 10 5248240 5248240 C T AKR1C4 Silent p.V150V 0.41 TCGA-Z2-A8RT-06 10 5254997 5254997 C T AKR1C4 Missense_Mutation p.L241F 0.43 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 10 52595994 52595994 C T A1CF Silent p.K156K 0.36 TCGA-Z2-A8RT-06 10 52610471 52610471 C T A1CF Missense_Mutation p.G26E 0.46 tolerated(1) benign(0) TCGA-Z2-A8RT-06 10 52610487 52610487 G A A1CF Missense_Mutation p.P21S 0.33 deleterious(0.04) benign(0) TCGA-Z2-A8RT-06 10 5435870 5435870 C T TUBAL3 Silent p.G317G 0.30 TCGA-Z2-A8RT-06 10 55566422 55566422 G A PCDH15 Missense_Mutation p.H1655Y 0.38 tolerated_low_confidence(0.18) benign(0.006) TCGA-Z2-A8RT-06 10 55582299 55582299 A T PCDH15 Missense_Mutation p.N1731K 0.46 deleterious_low_confidence(0.01) benign(0.016) TCGA-Z2-A8RT-06 10 55587307 55587307 G A PCDH15 Missense_Mutation p.R1405C 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 10 55721535 55721535 C T PCDH15 Missense_Mutation p.E996K 0.39 tolerated(0.5) possibly_damaging(0.888) TCGA-Z2-A8RT-06 10 6008171 6008171 C T IL15RA Missense_Mutation p.E74K 0.41 tolerated(0.13) probably_damaging(0.969) TCGA-Z2-A8RT-06 10 61552740 61552740 G A CCDC6 Missense_Mutation p.P454S 0.32 tolerated_low_confidence(0.23) unknown(0) TCGA-Z2-A8RT-06 10 61819483 61819483 C T ANK3 Intron 0.33 TCGA-Z2-A8RT-06 10 61831389 61831389 C T ANK3 Missense_Mutation p.E3084K 0.38 probably_damaging(0.956) TCGA-Z2-A8RT-06 10 61833820 61833820 G A ANK3 Silent p.V2273V 0.39 TCGA-Z2-A8RT-06 10 61844454 61844454 G A ANK3 Missense_Mutation p.S1327F 0.38 benign(0.304) TCGA-Z2-A8RT-06 10 61844938 61844938 G A ANK3 Silent p.S1274S 0.34 TCGA-Z2-A8RT-06 10 61846515 61846515 G A ANK3 Missense_Mutation p.P1223L 0.48 probably_damaging(0.999) TCGA-Z2-A8RT-06 10 61846547 61846547 G A ANK3 Silent p.F1212F 0.42 TCGA-Z2-A8RT-06 10 61958270 61958270 G A ANK3 Missense_Mutation p.S506L 0.32 possibly_damaging(0.685) TCGA-Z2-A8RT-06 10 61959981 61959981 C T ANK3 Missense_Mutation p.G466E 0.37 probably_damaging(1) TCGA-Z2-A8RT-06 10 61973268 61973268 C T ANK3 Missense_Mutation p.D300N 0.27 probably_damaging(0.994) TCGA-Z2-A8RT-06 10 65357874 65357874 C T REEP3 Silent p.F91F 0.32 TCGA-Z2-A8RT-06 10 69281635 69281635 C T CTNNA3 Missense_Mutation p.E182K 0.35 tolerated(0.52) possibly_damaging(0.621) TCGA-Z2-A8RT-06 10 69648773 69648773 C T SIRT1 Silent p.I227I 0.39 TCGA-Z2-A8RT-06 10 70056862 70056862 G A PBLD Intron 0.45 TCGA-Z2-A8RT-06 10 70734453 70734453 C T DDX21 Missense_Mutation p.P566S 0.31 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 10 70734454 70734454 C T DDX21 Missense_Mutation p.P566L 0.31 deleterious(0) possibly_damaging(0.882) TCGA-Z2-A8RT-06 10 70863660 70863660 C T SRGN Silent p.F87F 0.34 TCGA-Z2-A8RT-06 10 72358605 72358605 G A PRF1 Missense_Mutation p.S291F 0.41 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 10 72434385 72434385 C T ADAMTS14 Silent p.F52F 0.34 TCGA-Z2-A8RT-06 10 72462178 72462178 C T ADAMTS14 Silent p.A211A 0.46 TCGA-Z2-A8RT-06 10 72511255 72511255 G A ADAMTS14 Missense_Mutation p.G820S 0.34 tolerated(0.24) benign(0.034) TCGA-Z2-A8RT-06 10 73055603 73055603 C T UNC5B Silent p.Y737Y 0.54 TCGA-Z2-A8RT-06 10 7318900 7318900 G A SFMBT2 Missense_Mutation p.S275F 0.38 tolerated(0.15) probably_damaging(0.938) TCGA-Z2-A8RT-06 10 73326649 73326649 G A CDH23 Missense_Mutation p.D194N 0.35 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 10 73406382 73406382 C T CDH23 Missense_Mutation p.P486L 0.39 tolerated_low_confidence(0.09) benign(0.099) TCGA-Z2-A8RT-06 10 73466671 73466671 G A C10orf105 3'Flank 0.37 TCGA-Z2-A8RT-06 10 73466802 73466802 C T C10orf105 3'Flank 0.23 TCGA-Z2-A8RT-06 10 73544091 73544091 G A CDH23 Missense_Mutation p.D1811N 0.33 deleterious(0.02) possibly_damaging(0.908) TCGA-Z2-A8RT-06 10 74714289 74714289 G A PLA2G12B Missense_Mutation p.S52F 0.41 tolerated(0.2) benign(0.111) TCGA-Z2-A8RT-06 10 75407491 75407491 C T SYNPO2L Missense_Mutation p.G640E 0.37 tolerated(1) possibly_damaging(0.511) TCGA-Z2-A8RT-06 10 75676149 75676149 A C PLAU Silent p.G374G 0.31 TCGA-Z2-A8RT-06 10 76789402 76789402 C T KAT6B Missense_Mutation p.P1607L 0.39 probably_damaging(0.999) TCGA-Z2-A8RT-06 10 76910504 76910504 G A SAMD8 Missense_Mutation p.R73Q 0.34 tolerated(0.3) benign(0.322) TCGA-Z2-A8RT-06 10 7776994 7776994 G A ITIH2 Missense_Mutation p.E633K 0.24 tolerated(0.2) benign(0.102) TCGA-Z2-A8RT-06 10 7780585 7780585 G A ITIH2 Silent p.G653G 0.40 TCGA-Z2-A8RT-06 10 77818461 77818461 C T C10orf11 Silent p.L118L 0.41 TCGA-Z2-A8RT-06 10 79565527 79565527 G A DLG5 Missense_Mutation p.S1687F 0.34 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 10 8115751 8115751 G A GATA3 Missense_Mutation p.R367Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 10 84738731 84738731 G A NRG3 Missense_Mutation p.G480R 0.28 deleterious(0.02) probably_damaging(0.933) TCGA-Z2-A8RT-06 10 84745151 84745151 G A NRG3 Silent p.V627V 0.26 TCGA-Z2-A8RT-06 10 85964333 85964333 C T CDHR1 Silent p.P278P 0.31 TCGA-Z2-A8RT-06 10 871159 871159 G A LARP4B Nonsense_Mutation p.R444* 0.38 TCGA-Z2-A8RT-06 10 88260222 88260222 G A WAPAL Missense_Mutation p.L260F 0.26 tolerated_low_confidence(0.66) benign(0.005) TCGA-Z2-A8RT-06 10 88414507 88414507 C T OPN4 5'UTR 0.50 TCGA-Z2-A8RT-06 10 88717144 88717144 G A MMRN2 Missense_Mutation p.P52L 0.36 deleterious(0.04) benign(0.037) TCGA-Z2-A8RT-06 10 88769060 88769060 C T RP11-96C23.10 3'Flank 0.35 TCGA-Z2-A8RT-06 10 90438384 90438384 C T LIPF Silent p.A391A 0.47 TCGA-Z2-A8RT-06 10 91177089 91177089 C T IFIT5 Missense_Mutation p.L45F 0.36 tolerated(0.11) probably_damaging(0.999) TCGA-Z2-A8RT-06 10 94214195 94214195 G A IDE 3'UTR 0.32 TCGA-Z2-A8RT-06 10 95720220 95720220 C T PIPSL RNA 0.38 TCGA-Z2-A8RT-06 10 95791484 95791484 G A PLCE1 Silent p.K227K 0.36 TCGA-Z2-A8RT-06 10 96259997 96259997 C T TBC1D12 Nonsense_Mutation p.R478* 0.24 TCGA-Z2-A8RT-06 10 96447594 96447594 G A CYP2C18 Missense_Mutation p.G79E 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 10 96541588 96541588 A G CYP2C19 Missense_Mutation p.N218S 0.39 tolerated(0.41) benign(0.001) TCGA-Z2-A8RT-06 10 96748686 96748686 G A CYP2C9 Silent p.L458L 0.40 TCGA-Z2-A8RT-06 10 96798756 96798756 C T CYP2C8 Missense_Mutation p.D397N 0.34 deleterious(0.03) possibly_damaging(0.469) TCGA-Z2-A8RT-06 10 96829171 96829171 C T CYP2C8 5'UTR 0.42 TCGA-Z2-A8RT-06 10 97960738 97960738 C T BLNK Silent p.Q337Q 0.35 TCGA-Z2-A8RT-06 10 98031227 98031227 G A BLNK 5'UTR 0.52 TCGA-Z2-A8RT-06 10 98380255 98380255 C T PIK3AP1 Missense_Mutation p.G599R 0.44 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 10 98386525 98386525 G A PIK3AP1 Missense_Mutation p.P537S 0.33 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 10 98742733 98742733 C T C10orf12 Missense_Mutation p.S529F 0.33 tolerated(0.7) benign(0.036) TCGA-Z2-A8RT-06 10 98744001 98744001 C T C10orf12 Nonsense_Mutation p.R952* 0.37 TCGA-Z2-A8RT-06 10 98778784 98778784 C T SLIT1 Missense_Mutation p.D943N 0.33 tolerated(0.29) benign(0.302) TCGA-Z2-A8RT-06 10 98817034 98817034 G A SLIT1 Missense_Mutation p.L364F 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-Z2-A8RT-06 11 100061937 100061937 G A CNTN5 Missense_Mutation p.E554K 0.78 tolerated(0.42) possibly_damaging(0.633) TCGA-Z2-A8RT-06 11 101341938 101341938 G A TRPC6 Silent p.F795F 0.62 TCGA-Z2-A8RT-06 11 101863536 101863536 C T KIAA1377 Missense_Mutation p.P1091L 0.37 tolerated(0.06) possibly_damaging(0.876) TCGA-Z2-A8RT-06 11 102661198 102661198 T C MMP1 Missense_Mutation p.K452R 0.62 tolerated(0.29) benign(0.009) TCGA-Z2-A8RT-06 11 10483274 10483274 G A AMPD3 Missense_Mutation p.E79K 0.65 deleterious(0.04) benign(0.16) TCGA-Z2-A8RT-06 11 105925027 105925027 G A KBTBD3 Missense_Mutation p.S130L 0.54 deleterious(0) probably_damaging(0.968) TCGA-Z2-A8RT-06 11 107463046 107463046 G A AP000889.3 Splice_Site p.X82_splice 0.69 TCGA-Z2-A8RT-06 11 108348422 108348422 G A KDELC2 Missense_Mutation p.A437V 0.77 tolerated(0.16) possibly_damaging(0.536) TCGA-Z2-A8RT-06 11 113146113 113146113 G A NCAM1 3'UTR 0.54 TCGA-Z2-A8RT-06 11 113270707 113270707 C T ANKK1 Silent p.F672F 0.75 TCGA-Z2-A8RT-06 11 114392946 114392946 C T NXPE1 Missense_Mutation p.R321K 0.62 tolerated(0.07) possibly_damaging(0.641) TCGA-Z2-A8RT-06 11 116633600 116633600 G A BUD13 Silent p.S235S 0.70 TCGA-Z2-A8RT-06 11 116707729 116707729 C T APOA1 Missense_Mutation p.G63E 0.65 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 11 117052604 117052604 C T SIDT2 Silent p.F129F 0.66 TCGA-Z2-A8RT-06 11 118068748 118068748 C T AMICA1 Missense_Mutation p.E324K 0.64 tolerated_low_confidence(0.44) benign(0.002) TCGA-Z2-A8RT-06 11 118128008 118128008 T C MPZL2 Missense_Mutation p.N202S 0.68 tolerated(0.45) benign(0.116) TCGA-Z2-A8RT-06 11 118133256 118133256 C T MPZL2 Nonsense_Mutation p.W111* 0.74 TCGA-Z2-A8RT-06 11 118376412 118376412 C T KMT2A Missense_Mutation p.P3269S 0.66 benign(0.021) TCGA-Z2-A8RT-06 11 119025280 119025280 G A ABCG4 Missense_Mutation p.E179K 0.67 tolerated(0.43) benign(0.022) TCGA-Z2-A8RT-06 11 119509463 119509463 G A RP11-196E1.3 Intron 0.76 TCGA-Z2-A8RT-06 11 120008373 120008373 C T TRIM29 Missense_Mutation p.E123K 0.60 deleterious(0.01) benign(0.154) TCGA-Z2-A8RT-06 11 120318957 120318957 A T ARHGEF12 Missense_Mutation p.Y546F 0.77 tolerated(0.18) benign(0.074) TCGA-Z2-A8RT-06 11 120957707 120957707 C T TBCEL Missense_Mutation p.P393S 0.70 tolerated(0.71) benign(0.083) TCGA-Z2-A8RT-06 11 120980156 120980156 C T TECTA Silent p.F145F 0.74 TCGA-Z2-A8RT-06 11 1213347 1213347 G A MUC5AC RNA 0.07 TCGA-Z2-A8RT-06 11 12316004 12316004 C T MICALCL Silent p.A342A 0.69 TCGA-Z2-A8RT-06 11 123489490 123489490 G A GRAMD1B Missense_Mutation p.G664D 0.56 tolerated(0.4) possibly_damaging(0.628) TCGA-Z2-A8RT-06 11 123810445 123810445 G A OR4D5 Missense_Mutation p.G41E 0.58 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 11 123847921 123847921 C T OR10S1 Missense_Mutation p.G160R 0.62 deleterious(0.03) probably_damaging(0.981) TCGA-Z2-A8RT-06 11 123886557 123886557 C A OR10G4 Silent p.S92S 0.42 TCGA-Z2-A8RT-06 11 123894604 123894604 G A OR10G9 Silent p.K295K 0.65 TCGA-Z2-A8RT-06 11 123900682 123900682 C T OR10G8 Missense_Mutation p.S118F 0.63 deleterious(0) possibly_damaging(0.797) TCGA-Z2-A8RT-06 11 123988472 123988472 C T VWA5A Missense_Mutation p.P46S 0.69 deleterious(0.04) possibly_damaging(0.855) TCGA-Z2-A8RT-06 11 124189289 124189289 C T OR8D2 Missense_Mutation p.E269K 0.63 tolerated(0.09) possibly_damaging(0.492) TCGA-Z2-A8RT-06 11 125330467 125330467 G A FEZ1 Silent p.S198S 0.76 TCGA-Z2-A8RT-06 11 125887088 125887088 G A CDON Missense_Mutation p.L275F 0.63 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 11 1267264 1267264 C T MUC5B Missense_Mutation p.P3052S 0.62 unknown(0) TCGA-Z2-A8RT-06 11 1270716 1270716 G A MUC5B Silent p.R4202R 0.48 TCGA-Z2-A8RT-06 11 132289994 132289994 A C OPCML 3'UTR 0.70 TCGA-Z2-A8RT-06 11 133790575 133790575 C T IGSF9B Silent p.E1015E 0.55 TCGA-Z2-A8RT-06 11 133791115 133791115 G A IGSF9B Silent p.A835A 0.56 TCGA-Z2-A8RT-06 11 134126990 134126990 C T ACAD8 Silent p.F73F 0.57 TCGA-Z2-A8RT-06 11 134188548 134188548 C T GLB1L3 Silent p.F601F 0.83 TCGA-Z2-A8RT-06 11 13514328 13514328 C T PTH Silent p.G25G 0.76 TCGA-Z2-A8RT-06 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.57 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-Z2-A8RT-06 11 17793968 17793968 T A KCNC1 Missense_Mutation p.Y443N 0.68 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 11 18751367 18751367 T A PTPN5 Splice_Site p.X444_splice 0.73 TCGA-Z2-A8RT-06 11 19213962 19213962 C T CSRP3 Missense_Mutation p.A12T 0.67 tolerated(0.33) probably_damaging(0.997) TCGA-Z2-A8RT-06 11 2427292 2427292 C T TRPM5 Missense_Mutation p.G1094D 0.61 tolerated(0.38) probably_damaging(0.99) TCGA-Z2-A8RT-06 11 25098946 25098946 C T LUZP2 Silent p.I310I 0.72 TCGA-Z2-A8RT-06 11 27077142 27077142 G A BBOX1 Silent p.V55V 0.59 TCGA-Z2-A8RT-06 11 27679550 27679550 G A BDNF Missense_Mutation p.P270S 0.68 tolerated(0.19) probably_damaging(0.947) TCGA-Z2-A8RT-06 11 33564942 33564942 C T KIAA1549L Silent p.I314I 0.59 TCGA-Z2-A8RT-06 11 33777413 33777413 G A FBXO3 Silent p.L194L 0.68 TCGA-Z2-A8RT-06 11 34533118 34533118 G A ELF5 5'UTR 0.62 TCGA-Z2-A8RT-06 11 34680484 34680484 C T EHF 3'UTR 0.70 TCGA-Z2-A8RT-06 11 40137720 40137720 C T LRRC4C Silent p.L41L 0.89 TCGA-Z2-A8RT-06 11 4388743 4388743 G A OR52B4 Silent p.I261I 0.61 TCGA-Z2-A8RT-06 11 44959781 44959781 C T TP53I11 Missense_Mutation p.D36N 0.52 tolerated(0.09) possibly_damaging(0.906) TCGA-Z2-A8RT-06 11 4566853 4566853 C T OR52M1 Missense_Mutation p.R145C 0.60 deleterious(0.01) benign(0.009) TCGA-Z2-A8RT-06 11 45672443 45672443 G A CHST1 Missense_Mutation p.L11F 0.45 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 11 45967513 45967513 G A PHF21A Missense_Mutation p.L443F 0.65 tolerated(0.1) possibly_damaging(0.878) TCGA-Z2-A8RT-06 11 45967514 45967514 G A PHF21A Silent p.A442A 0.66 TCGA-Z2-A8RT-06 11 46564278 46564278 G T AMBRA1 Missense_Mutation p.S340Y 0.73 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-Z2-A8RT-06 11 46898099 46898099 T G LRP4 Missense_Mutation p.N1152H 0.62 deleterious(0.03) probably_damaging(0.972) TCGA-Z2-A8RT-06 11 4825134 4825134 C T OR52R1 Silent p.V159V 0.70 TCGA-Z2-A8RT-06 11 4903786 4903786 C T OR51T1 Silent p.S246S 0.59 TCGA-Z2-A8RT-06 11 4929077 4929077 C T OR51A7 Missense_Mutation p.P160S 0.66 deleterious(0.02) possibly_damaging(0.777) TCGA-Z2-A8RT-06 11 49974262 49974262 G A OR4C13 Missense_Mutation p.M96I 0.64 tolerated_low_confidence(0.07) benign(0.033) TCGA-Z2-A8RT-06 11 5068254 5068254 C T OR52J3 Missense_Mutation p.R167C 0.56 deleterious(0.01) benign(0.192) TCGA-Z2-A8RT-06 11 51412232 51412232 G A OR4A5 Missense_Mutation p.S55F 0.55 deleterious_low_confidence(0) benign(0.295) TCGA-Z2-A8RT-06 11 5172831 5172831 G A OR52A1 Missense_Mutation p.L257F 0.69 tolerated(0.16) possibly_damaging(0.529) TCGA-Z2-A8RT-06 11 5221643 5221643 C T OR51V1 Silent p.G96G 0.82 TCGA-Z2-A8RT-06 11 5221880 5221880 C T OR51V1 Silent p.T17T 0.62 TCGA-Z2-A8RT-06 11 5363977 5363977 G A OR51B5 Missense_Mutation p.H260Y 0.64 deleterious(0.03) possibly_damaging(0.521) TCGA-Z2-A8RT-06 11 5461847 5461847 C T OR51I1 Missense_Mutation p.E300K 0.61 deleterious(0.03) benign(0.002) TCGA-Z2-A8RT-06 11 55110878 55110878 G A OR4A16 Missense_Mutation p.D68N 0.58 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 11 55135643 55135643 C T OR4A15 Missense_Mutation p.S95L 0.71 deleterious_low_confidence(0) probably_damaging(1) TCGA-Z2-A8RT-06 11 5530378 5530378 G A UBQLN3 Silent p.L137L 0.62 TCGA-Z2-A8RT-06 11 55418508 55418508 C T OR4S2 Silent p.I43I 0.82 TCGA-Z2-A8RT-06 11 55418841 55418841 C T OR4S2 Silent p.S154S 0.79 TCGA-Z2-A8RT-06 11 55563965 55563965 C T OR5D14 Missense_Mutation p.P312S 0.55 tolerated(0.4) benign(0.001) TCGA-Z2-A8RT-06 11 55587105 55587105 G A OR5D18 5'UTR 0.57 TCGA-Z2-A8RT-06 11 5565957 5565957 G A OR52H1 Missense_Mutation p.S266F 0.69 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 11 56043654 56043654 C T OR5T1 Silent p.F180F 0.62 TCGA-Z2-A8RT-06 11 56057728 56057728 G A OR8H1 Nonsense_Mutation p.Q271* 0.53 TCGA-Z2-A8RT-06 11 56344694 56344694 G A OR5M10 Silent p.F168F 0.72 TCGA-Z2-A8RT-06 11 56380574 56380574 C T OR5M1 Silent p.R135R 0.57 TCGA-Z2-A8RT-06 11 57004472 57004472 C T APLNR Missense_Mutation p.E3K 0.65 tolerated_low_confidence(0.23) benign(0.046) TCGA-Z2-A8RT-06 11 57080778 57080778 G A TNKS1BP1 Missense_Mutation p.R462C 0.75 tolerated(0.09) benign(0.002) TCGA-Z2-A8RT-06 11 5730488 5730488 G A TRIM22 Silent p.L369L 0.64 TCGA-Z2-A8RT-06 11 5730489 5730489 G A TRIM22 Missense_Mutation p.G370S 0.62 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 11 57373860 57373860 C T SERPING1 Intron 0.67 TCGA-Z2-A8RT-06 11 58723084 58723084 G A GLYATL1 Missense_Mutation p.E196K 0.53 tolerated(0.47) benign(0.039) TCGA-Z2-A8RT-06 11 58978758 58978758 G C MPEG1 Silent p.P527P 0.55 TCGA-Z2-A8RT-06 11 59189831 59189831 A C OR5A2 Missense_Mutation p.V199G 0.68 deleterious(0) possibly_damaging(0.606) TCGA-Z2-A8RT-06 11 61070136 61070136 G A DDB1 Silent p.G1010G 0.71 TCGA-Z2-A8RT-06 11 62678195 62678195 G A CHRM1 Silent p.S126S 0.76 TCGA-Z2-A8RT-06 11 62766399 62766399 G A SLC22A8 Missense_Mutation p.S252L 0.53 tolerated(0.16) benign(0.003) TCGA-Z2-A8RT-06 11 62911058 62911058 C T SLC22A24 Missense_Mutation p.G65E 0.69 tolerated(0.18) benign(0.021) TCGA-Z2-A8RT-06 11 62996948 62996948 G A SLC22A25 Silent p.I59I 0.66 TCGA-Z2-A8RT-06 11 64004995 64004995 C T VEGFB Missense_Mutation p.P172S 0.88 tolerated(0.05) unknown(0) TCGA-Z2-A8RT-06 11 6424723 6424723 A T APBB1 Missense_Mutation p.W317R 0.67 deleterious(0.03) benign(0.165) TCGA-Z2-A8RT-06 11 65732580 65732580 G A SART1 Missense_Mutation p.E149K 0.74 tolerated(0.22) benign(0.185) TCGA-Z2-A8RT-06 11 65793437 65793437 C T CATSPER1 Silent p.Q138Q 0.58 TCGA-Z2-A8RT-06 11 65810542 65810542 G A GAL3ST3 Silent p.F244F 0.64 TCGA-Z2-A8RT-06 11 65822647 65822647 C T SF3B2 Missense_Mutation p.P120L 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-Z2-A8RT-06 11 66411632 66411632 C T RBM4 Intron 0.76 TCGA-Z2-A8RT-06 11 67222893 67222893 C T CABP4 5'UTR 0.60 TCGA-Z2-A8RT-06 11 6816928 6816928 C T OR6A2 Silent p.R4R 0.65 TCGA-Z2-A8RT-06 11 68530125 68530125 G A CPT1A Silent p.F615F 0.61 TCGA-Z2-A8RT-06 11 6942373 6942373 C T OR2D3 Silent p.F47F 0.68 TCGA-Z2-A8RT-06 11 6942841 6942841 G A OR2D3 Silent p.L203L 0.60 TCGA-Z2-A8RT-06 11 7022224 7022224 C T ZNF214 Nonsense_Mutation p.W230* 0.61 TCGA-Z2-A8RT-06 11 7022720 7022720 G A ZNF214 Missense_Mutation p.S65F 0.69 tolerated(0.27) benign(0.234) TCGA-Z2-A8RT-06 11 70348926 70348926 G A SHANK2 Silent p.D725D 0.50 TCGA-Z2-A8RT-06 11 7059921 7059921 A C NLRP14 Missense_Mutation p.K35T 0.57 deleterious(0.01) possibly_damaging(0.812) TCGA-Z2-A8RT-06 11 7064214 7064214 G A NLRP14 Silent p.L319L 0.63 TCGA-Z2-A8RT-06 11 73809191 73809191 G A C2CD3 Nonsense_Mutation p.R948* 0.65 TCGA-Z2-A8RT-06 11 7507102 7507102 G T OLFML1 5'UTR 0.71 TCGA-Z2-A8RT-06 11 76062665 76062665 G A PRKRIR Missense_Mutation p.A510V 0.06 deleterious(0.01) benign(0.133) TCGA-Z2-A8RT-06 11 76370683 76370683 G A LRRC32 Missense_Mutation p.R652C 0.69 tolerated(0.05) benign(0.15) TCGA-Z2-A8RT-06 11 76370684 76370684 G A LRRC32 Silent p.V651V 0.69 TCGA-Z2-A8RT-06 11 7652231 7652231 A G PPFIBP2 Missense_Mutation p.K347R 0.72 tolerated(0.23) benign(0.007) TCGA-Z2-A8RT-06 11 78413308 78413308 G A TENM4 Silent p.V1450V 0.83 TCGA-Z2-A8RT-06 11 83770467 83770467 T C DLG2 Silent p.K270K 0.35 TCGA-Z2-A8RT-06 11 83770468 83770468 T A DLG2 Missense_Mutation p.K270I 0.38 tolerated(0.1) possibly_damaging(0.857) TCGA-Z2-A8RT-06 11 84028055 84028055 C T DLG2 Intron 0.36 TCGA-Z2-A8RT-06 11 8496350 8496350 G A STK33 Missense_Mutation p.P35S 0.68 tolerated_low_confidence(1) benign(0.001) TCGA-Z2-A8RT-06 11 9009756 9009756 G A NRIP3 Missense_Mutation p.P83L 0.65 tolerated(0.12) benign(0.295) TCGA-Z2-A8RT-06 11 9009757 9009757 G A NRIP3 Missense_Mutation p.P83S 0.64 tolerated(0.41) benign(0.028) TCGA-Z2-A8RT-06 11 92532117 92532117 C T FAT3 Missense_Mutation p.L1980F 0.79 benign(0.26) TCGA-Z2-A8RT-06 11 92569765 92569765 G A FAT3 Missense_Mutation p.G3374R 0.83 probably_damaging(1) TCGA-Z2-A8RT-06 11 93088664 93088664 G A CCDC67 Missense_Mutation p.E53K 0.48 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 11 93844861 93844861 G A HEPHL1 Missense_Mutation p.R1094Q 0.76 tolerated(0.59) benign(0.001) TCGA-Z2-A8RT-06 11 94759382 94759382 G A KDM4E Missense_Mutation p.E221K 0.92 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 11 94924746 94924746 A C SESN3 Missense_Mutation p.V55G 0.79 tolerated(0.34) benign(0.089) TCGA-Z2-A8RT-06 11 95826068 95826068 G A MAML2 Missense_Mutation p.P376L 0.76 benign(0.444) TCGA-Z2-A8RT-06 11 95826069 95826069 G A MAML2 Missense_Mutation p.P376S 0.78 benign(0.012) TCGA-Z2-A8RT-06 11 972235 972235 C T AP2A2 Silent p.I151I 0.52 TCGA-Z2-A8RT-06 12 100451423 100451423 G A UHRF1BP1L Missense_Mutation p.S1117L 0.38 deleterious(0) possibly_damaging(0.878) TCGA-Z2-A8RT-06 12 100551359 100551359 G A AC010203.1 5'Flank 0.39 TCGA-Z2-A8RT-06 12 101510554 101510554 G A ANO4 Missense_Mutation p.G815R 0.30 tolerated(0.17) benign(0.005) TCGA-Z2-A8RT-06 12 101551031 101551031 T C SLC5A8 3'UTR 0.32 TCGA-Z2-A8RT-06 12 101584326 101584326 G A SLC5A8 Silent p.F251F 0.45 TCGA-Z2-A8RT-06 12 101587535 101587535 C T SLC5A8 Nonsense_Mutation p.W187* 0.32 TCGA-Z2-A8RT-06 12 101880264 101880264 G A SPIC Nonsense_Mutation p.W154* 0.34 TCGA-Z2-A8RT-06 12 103352591 103352591 C T ASCL1 Missense_Mutation p.S190L 0.40 deleterious(0.02) benign(0.173) TCGA-Z2-A8RT-06 12 103352766 103352766 G A ASCL1 3'UTR 0.33 TCGA-Z2-A8RT-06 12 104015838 104015838 G A STAB2 Missense_Mutation p.A146T 0.43 deleterious(0.01) probably_damaging(0.928) TCGA-Z2-A8RT-06 12 104142834 104142834 G A STAB2 Missense_Mutation p.G2113E 0.39 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 12 104376924 104376924 C T TDG Missense_Mutation p.R209C 0.39 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 12 104851141 104851141 C T CHST11 5'UTR 0.39 TCGA-Z2-A8RT-06 12 10586433 10586433 G A KLRC2 Missense_Mutation p.S147L 0.44 deleterious(0.01) possibly_damaging(0.469) TCGA-Z2-A8RT-06 12 106532202 106532202 G A NUAK1 Missense_Mutation p.S77F 0.19 deleterious(0.03) possibly_damaging(0.876) TCGA-Z2-A8RT-06 12 10772652 10772652 T A STYK1 3'UTR 0.53 TCGA-Z2-A8RT-06 12 109186457 109186457 G A SSH1 Nonsense_Mutation p.Q500* 0.34 TCGA-Z2-A8RT-06 12 109306305 109306305 C T SVOP 3'UTR 0.35 TCGA-Z2-A8RT-06 12 109877447 109877447 G A MYO1H Missense_Mutation p.G753E 0.39 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 12 11035249 11035249 G A PRH1 Missense_Mutation p.P50L 0.42 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-Z2-A8RT-06 12 110427573 110427573 G A GIT2 Missense_Mutation p.S74F 0.37 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 12 11083359 11083359 G A PRH2 Missense_Mutation p.D67N 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-Z2-A8RT-06 12 110874429 110874429 G A ARPC3 Silent p.P104P 0.39 TCGA-Z2-A8RT-06 12 111099118 111099118 C T HVCN1 Missense_Mutation p.E53K 0.38 tolerated(0.05) benign(0.242) TCGA-Z2-A8RT-06 12 11139119 11139119 G A TAS2R50 Missense_Mutation p.S114F 0.42 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 12 111731248 111731248 A C CUX2 Splice_Site p.X146_splice 0.38 TCGA-Z2-A8RT-06 12 113307728 113307728 G A RPH3A Missense_Mutation p.G227E 0.43 tolerated(0.13) possibly_damaging(0.743) TCGA-Z2-A8RT-06 12 113905149 113905149 G A LHX5 Silent p.F251F 0.32 TCGA-Z2-A8RT-06 12 11421053 11421053 C T PRB3 Missense_Mutation p.G44R 0.39 deleterious(0.01) unknown(0) TCGA-Z2-A8RT-06 12 11461787 11461787 C T PRB4 Missense_Mutation p.G44R 0.06 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 12 11506787 11506787 C T PRB1 Missense_Mutation p.G84R 0.31 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 12 11546144 11546144 C T PRB2 Missense_Mutation p.G290R 0.32 tolerated(0.05) unknown(0) TCGA-Z2-A8RT-06 12 11546234 11546234 G A PRB2 Missense_Mutation p.P260S 0.27 tolerated(0.44) unknown(0) TCGA-Z2-A8RT-06 12 11546515 11546515 C T PRB2 Missense_Mutation p.G166E 0.37 tolerated(0.17) unknown(0) TCGA-Z2-A8RT-06 12 116408469 116408469 G A MED13L Silent p.F1999F 0.36 TCGA-Z2-A8RT-06 12 116444193 116444193 C T MED13L Silent p.K754K 0.42 TCGA-Z2-A8RT-06 12 117476956 117476956 G A TESC Silent p.T209T 0.27 TCGA-Z2-A8RT-06 12 117693819 117693819 A T NOS1 Missense_Mutation p.F852Y 0.45 tolerated(1) probably_damaging(0.952) TCGA-Z2-A8RT-06 12 117904958 117904958 G A KSR2 3'UTR 0.38 TCGA-Z2-A8RT-06 12 118577321 118577321 C T PEBP1 Missense_Mutation p.S104F 0.38 deleterious(0.01) probably_damaging(0.941) TCGA-Z2-A8RT-06 12 120126002 120126002 G A CIT 3'UTR 0.33 TCGA-Z2-A8RT-06 12 120148174 120148174 G A CIT Silent p.T1651T 0.42 TCGA-Z2-A8RT-06 12 120148175 120148175 G A CIT Missense_Mutation p.T1651I 0.42 deleterious(0.01) benign(0.243) TCGA-Z2-A8RT-06 12 120221755 120221755 G A CIT Missense_Mutation p.S501F 0.35 deleterious(0.01) possibly_damaging(0.492) TCGA-Z2-A8RT-06 12 120502532 120502532 T A CCDC64 Intron 0.42 TCGA-Z2-A8RT-06 12 120595769 120595769 C T GCN1L1 Missense_Mutation p.E991K 0.39 benign(0.122) TCGA-Z2-A8RT-06 12 121431474 121431474 G A HNF1A Silent p.K226K 0.35 TCGA-Z2-A8RT-06 12 122622049 122622049 C T MLXIP Missense_Mutation p.P689L 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-Z2-A8RT-06 12 122826090 122826090 G A CLIP1 Missense_Mutation p.S554F 0.39 deleterious(0) possibly_damaging(0.555) TCGA-Z2-A8RT-06 12 123253374 123253374 C T DENR Missense_Mutation p.S153F 0.53 deleterious(0) probably_damaging(0.975) TCGA-Z2-A8RT-06 12 124092059 124092059 C T DDX55 Silent p.F109F 0.44 TCGA-Z2-A8RT-06 12 124268518 124268518 G A DNAH10 Missense_Mutation p.E281K 0.39 possibly_damaging(0.673) TCGA-Z2-A8RT-06 12 124303551 124303551 C T DNAH10 Silent p.L1161L 0.47 TCGA-Z2-A8RT-06 12 129559541 129559541 C T TMEM132D Missense_Mutation p.D727N 0.25 tolerated(0.12) possibly_damaging(0.622) TCGA-Z2-A8RT-06 12 129569277 129569277 G A TMEM132D Intron 0.31 TCGA-Z2-A8RT-06 12 12966271 12966271 C T DDX47 5'Flank 0.40 TCGA-Z2-A8RT-06 12 13068883 13068883 C T GPRC5A 3'UTR 0.29 TCGA-Z2-A8RT-06 12 130840195 130840195 C T PIWIL1 Missense_Mutation p.H463Y 0.36 tolerated(0.34) benign(0.001) TCGA-Z2-A8RT-06 12 130907049 130907049 G A RIMBP2 Missense_Mutation p.R807C 0.40 deleterious(0.02) benign(0.276) TCGA-Z2-A8RT-06 12 130907050 130907050 G A RIMBP2 Silent p.P806P 0.38 TCGA-Z2-A8RT-06 12 130926512 130926512 C T RIMBP2 Missense_Mutation p.R445K 0.37 tolerated(0.67) benign(0.004) TCGA-Z2-A8RT-06 12 131293193 131293193 G A STX2 Missense_Mutation p.R113W 0.39 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 12 132326292 132326292 C T MMP17 Missense_Mutation p.P277L 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 12 132514266 132514266 C T EP400 Missense_Mutation p.P1801L 0.42 unknown(0) TCGA-Z2-A8RT-06 12 132631930 132631930 C T NOC4L Silent p.F150F 0.33 TCGA-Z2-A8RT-06 12 133378430 133378430 G A GOLGA3 Missense_Mutation p.R575W 0.29 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 133502231 133502231 G A ZNF605 Nonsense_Mutation p.Q583* 0.35 TCGA-Z2-A8RT-06 12 133732086 133732086 C T CTD-2140B24.4 Intron 0.22 TCGA-Z2-A8RT-06 12 133733464 133733464 C T ZNF10 Silent p.F544F 0.27 TCGA-Z2-A8RT-06 12 133733572 133733572 C T ZNF10 3'UTR 0.31 TCGA-Z2-A8RT-06 12 13715686 13715686 C T GRIN2B 3'UTR 0.38 TCGA-Z2-A8RT-06 12 13716235 13716235 C T GRIN2B Missense_Mutation p.E1313K 0.34 deleterious(0.04) benign(0.362) TCGA-Z2-A8RT-06 12 13724831 13724831 C T GRIN2B Missense_Mutation p.R693K 0.38 tolerated(0.17) probably_damaging(0.986) TCGA-Z2-A8RT-06 12 18644400 18644400 G A PIK3C2G Missense_Mutation p.E860K 0.34 tolerated(0.15) probably_damaging(0.985) TCGA-Z2-A8RT-06 12 18747451 18747451 C T PIK3C2G Silent p.F1304F 0.38 TCGA-Z2-A8RT-06 12 18836124 18836124 C T PLCZ1 3'UTR 0.44 TCGA-Z2-A8RT-06 12 18890396 18890396 C T PLCZ1 5'UTR 0.33 TCGA-Z2-A8RT-06 12 18891552 18891552 T A CAPZA3 Missense_Mutation p.L117Q 0.48 deleterious(0.01) probably_damaging(0.972) TCGA-Z2-A8RT-06 12 1943837 1943837 G A LRTM2 Missense_Mutation p.D355N 0.32 tolerated(0.22) possibly_damaging(0.529) TCGA-Z2-A8RT-06 12 20807004 20807004 G A PDE3A Missense_Mutation p.D1017N 0.44 tolerated(0.15) benign(0.161) TCGA-Z2-A8RT-06 12 20893266 20893266 C T SLCO1C1 Missense_Mutation p.S566F 0.39 deleterious(0) possibly_damaging(0.53) TCGA-Z2-A8RT-06 12 21422638 21422638 G A SLCO1A2 Silent p.I619I 0.30 TCGA-Z2-A8RT-06 12 21445134 21445134 G A SLCO1A2 Missense_Mutation p.S525F 0.40 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 12 21450371 21450371 C T SLCO1A2 Missense_Mutation p.G348R 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-Z2-A8RT-06 12 27450698 27450698 C T STK38L Silent p.N15N 0.36 TCGA-Z2-A8RT-06 12 27543092 27543092 G A ARNTL2 Missense_Mutation p.R280Q 0.37 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 2778181 2778181 C T CACNA1C Missense_Mutation p.A1617V 0.36 deleterious(0.04) possibly_damaging(0.83) TCGA-Z2-A8RT-06 12 27845867 27845867 T A PPFIBP1 3'UTR 0.27 TCGA-Z2-A8RT-06 12 2930746 2930746 C T ITFG2 Silent p.A277A 0.33 TCGA-Z2-A8RT-06 12 31579260 31579260 G A DENND5B Silent p.F735F 0.29 TCGA-Z2-A8RT-06 12 33535340 33535340 G A SYT10 Silent p.I438I 0.40 TCGA-Z2-A8RT-06 12 34175405 34175405 C T ALG10 5'UTR 0.26 TCGA-Z2-A8RT-06 12 406345 406345 A C KDM5A Missense_Mutation p.S1366A 0.34 tolerated(0.41) benign(0.284) TCGA-Z2-A8RT-06 12 41365284 41365284 C T CNTN1 Intron 0.44 TCGA-Z2-A8RT-06 12 41967039 41967039 G A PDZRN4 Missense_Mutation p.E820K 0.43 tolerated(0.43) benign(0.021) TCGA-Z2-A8RT-06 12 43826267 43826267 G A ADAMTS20 Missense_Mutation p.S979F 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 4479695 4479695 C T FGF23 Silent p.L190L 0.44 TCGA-Z2-A8RT-06 12 463278 463278 G A KDM5A Silent p.P331P 0.40 TCGA-Z2-A8RT-06 12 46633597 46633597 C A SLC38A1 5'UTR 0.27 TCGA-Z2-A8RT-06 12 47186768 47186768 C T SLC38A4 Silent p.G29G 0.34 TCGA-Z2-A8RT-06 12 4735940 4735940 A C AKAP3 Missense_Mutation p.F710V 0.45 tolerated(0.24) benign(0.238) TCGA-Z2-A8RT-06 12 47628821 47628821 G A PCED1B 5'UTR 0.36 TCGA-Z2-A8RT-06 12 47629792 47629792 C T PCED1B Silent p.L316L 0.38 TCGA-Z2-A8RT-06 12 47629968 47629968 G A PCED1B Missense_Mutation p.M374I 0.39 tolerated(0.4) benign(0.001) TCGA-Z2-A8RT-06 12 48106386 48106386 C T ENDOU Silent p.K295K 0.31 TCGA-Z2-A8RT-06 12 4829912 4829912 C T GALNT8 Silent p.L23L 0.36 TCGA-Z2-A8RT-06 12 48393752 48393752 G A COL2A1 Missense_Mutation p.P81L 0.38 unknown(0) TCGA-Z2-A8RT-06 12 48919535 48919535 G A OR8S1 Missense_Mutation p.E41K 0.43 deleterious(0) benign(0.017) TCGA-Z2-A8RT-06 12 49061378 49061378 G A KANSL2 Intron 0.34 TCGA-Z2-A8RT-06 12 49087993 49087993 A T CCNT1 Missense_Mutation p.L335Q 0.42 tolerated(0.19) benign(0.352) TCGA-Z2-A8RT-06 12 49088136 49088136 A T CCNT1 Silent p.I287I 0.40 TCGA-Z2-A8RT-06 12 4920363 4920363 G A KCNA6 Missense_Mutation p.G386R 0.30 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 4920364 4920364 G A KCNA6 Missense_Mutation p.G386E 0.30 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 49298152 49298152 C T CCDC65 Silent p.P11P 0.39 TCGA-Z2-A8RT-06 12 49333562 49333562 C T ARF3 Missense_Mutation p.G87E 0.38 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-Z2-A8RT-06 12 49434732 49434732 G A KMT2D Missense_Mutation p.S2274L 0.40 probably_damaging(0.99) TCGA-Z2-A8RT-06 12 49445370 49445370 G A KMT2D Missense_Mutation p.S699F 0.33 unknown(0) TCGA-Z2-A8RT-06 12 49949499 49949499 C T KCNH3 Missense_Mutation p.P745S 0.19 tolerated(0.15) benign(0.017) TCGA-Z2-A8RT-06 12 49951875 49951875 G A KCNH3 3'UTR 0.50 TCGA-Z2-A8RT-06 12 50190184 50190184 G A NCKAP5L Missense_Mutation p.P487S 0.23 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 12 51065149 51065149 C T DIP2B Missense_Mutation p.S203F 0.27 deleterious(0.03) benign(0.057) TCGA-Z2-A8RT-06 12 51442139 51442139 G A LETMD1 5'UTR 0.38 TCGA-Z2-A8RT-06 12 51865227 51865227 C T SLC4A8 Silent p.F605F 0.38 TCGA-Z2-A8RT-06 12 51891057 51891057 G A SLC4A8 Intron 0.50 TCGA-Z2-A8RT-06 12 52159602 52159602 G A SCN8A Missense_Mutation p.G898R 0.36 tolerated(0.05) probably_damaging(1) TCGA-Z2-A8RT-06 12 52642646 52642646 G A KRT7 3'UTR 0.46 TCGA-Z2-A8RT-06 12 52711470 52711470 C T KRT83 Missense_Mutation p.E249K 0.25 deleterious(0.03) benign(0.273) TCGA-Z2-A8RT-06 12 52822190 52822190 G A KRT75 Missense_Mutation p.A411V 0.37 tolerated(0.07) benign(0.02) TCGA-Z2-A8RT-06 12 52841033 52841033 T G KRT6B Missense_Mutation p.S546R 0.44 tolerated(0.08) unknown(0) TCGA-Z2-A8RT-06 12 52845466 52845466 C T KRT6B Missense_Mutation p.G133R 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-Z2-A8RT-06 12 52911447 52911447 G A KRT5 Missense_Mutation p.A340V 0.41 deleterious(0) probably_damaging(0.959) TCGA-Z2-A8RT-06 12 52913728 52913728 C T KRT5 Missense_Mutation p.G118D 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-A8RT-06 12 53068808 53068808 C T KRT1 3'UTR 0.40 TCGA-Z2-A8RT-06 12 53185493 53185493 G A KRT3 Silent p.I432I 0.32 TCGA-Z2-A8RT-06 12 53227669 53227669 G A KRT79 Missense_Mutation p.P126S 0.26 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 12 53227970 53227970 A C KRT79 Missense_Mutation p.S25R 0.39 tolerated(0.11) benign(0) TCGA-Z2-A8RT-06 12 53242414 53242414 C T KRT78 Missense_Mutation p.D101N 0.44 deleterious(0.01) probably_damaging(0.933) TCGA-Z2-A8RT-06 12 53555113 53555113 G A CSAD Missense_Mutation p.P282S 0.28 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 53647324 53647324 C A MFSD5 Silent p.T342T 0.38 TCGA-Z2-A8RT-06 12 53819478 53819478 C T AMHR2 Silent p.I209I 0.49 TCGA-Z2-A8RT-06 12 54448755 54448755 C T HOXC4 Silent p.I187I 0.44 TCGA-Z2-A8RT-06 12 54675959 54675959 G A HNRNPA1 Missense_Mutation p.R122K 0.31 tolerated(0.06) benign(0.397) TCGA-Z2-A8RT-06 12 54756335 54756335 G A GPR84 3'UTR 0.49 TCGA-Z2-A8RT-06 12 54922042 54922042 G A NCKAP1L Missense_Mutation p.S796N 0.31 tolerated(0.05) possibly_damaging(0.449) TCGA-Z2-A8RT-06 12 54925097 54925097 G A NCKAP1L Missense_Mutation p.E854K 0.36 deleterious(0) probably_damaging(0.955) TCGA-Z2-A8RT-06 12 55524218 55524218 G A OR9K2 Missense_Mutation p.M222I 0.35 tolerated(1) benign(0.002) TCGA-Z2-A8RT-06 12 55820370 55820370 C T OR6C76 Silent p.L111L 0.44 TCGA-Z2-A8RT-06 12 56091594 56091594 C T ITGA7 Missense_Mutation p.E436K 0.41 tolerated(0.67) probably_damaging(0.985) TCGA-Z2-A8RT-06 12 56420635 56420635 C T IKZF4 Silent p.L119L 0.45 TCGA-Z2-A8RT-06 12 56505284 56505284 C T PA2G4 Nonsense_Mutation p.R364* 0.34 TCGA-Z2-A8RT-06 12 56722085 56722085 G A PAN2 Silent p.L170L 0.39 TCGA-Z2-A8RT-06 12 5674750 5674750 G A ANO2 Missense_Mutation p.R901C 0.26 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 12 5687656 5687656 G A ANO2 Silent p.F754F 0.28 TCGA-Z2-A8RT-06 12 56963680 56963680 C T RBMS2 Intron 0.32 TCGA-Z2-A8RT-06 12 57005825 57005825 G A BAZ2A Silent p.I449I 0.29 TCGA-Z2-A8RT-06 12 57592296 57592296 C T LRP1 Silent p.I3173I 0.33 TCGA-Z2-A8RT-06 12 57677724 57677724 G A R3HDM2 Missense_Mutation p.R338W 0.36 deleterious(0.02) benign(0.001) TCGA-Z2-A8RT-06 12 57850553 57850553 C T INHBE Silent p.L325L 0.39 TCGA-Z2-A8RT-06 12 57859017 57859017 G A GLI1 Silent p.R171R 0.36 TCGA-Z2-A8RT-06 12 57860079 57860079 G A GLI1 Silent p.G273G 0.39 TCGA-Z2-A8RT-06 12 57865903 57865903 G A GLI1 3'UTR 0.31 TCGA-Z2-A8RT-06 12 57881783 57881783 G A MARS 5'UTR 0.30 TCGA-Z2-A8RT-06 12 5848489 5848489 C T ANO2 Silent p.E472E 0.29 TCGA-Z2-A8RT-06 12 5853343 5853343 G A ANO2 Missense_Mutation p.S440F 0.35 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 12 59281596 59281596 G A LRIG3 Missense_Mutation p.R356W 0.29 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 12 59281597 59281597 G C LRIG3 Missense_Mutation p.F355L 0.29 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 12 6061030 6061030 G A VWF Missense_Mutation p.P2712L 0.41 tolerated(0.07) possibly_damaging(0.908) TCGA-Z2-A8RT-06 12 6439146 6439146 G A TNFRSF1A Silent p.F285F 0.40 TCGA-Z2-A8RT-06 12 65634753 65634753 C T LEMD3 Missense_Mutation p.R731C 0.34 deleterious(0.01) possibly_damaging(0.518) TCGA-Z2-A8RT-06 12 65637212 65637212 C T LEMD3 Missense_Mutation p.P784S 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-Z2-A8RT-06 12 66725088 66725088 C T HELB Missense_Mutation p.P942L 0.40 tolerated(0.15) benign(0.029) TCGA-Z2-A8RT-06 12 6747365 6747365 G A ACRBP 3'UTR 0.39 TCGA-Z2-A8RT-06 12 6749241 6749241 C T ACRBP Silent p.G470G 0.24 TCGA-Z2-A8RT-06 12 6753476 6753476 G A ACRBP Silent p.H257H 0.35 TCGA-Z2-A8RT-06 12 6936114 6936114 G A GPR162 Silent p.E504E 0.37 TCGA-Z2-A8RT-06 12 70072651 70072651 C T BEST3 Silent p.R168R 0.40 TCGA-Z2-A8RT-06 12 70209308 70209308 C T RAB3IP 3'UTR 0.28 TCGA-Z2-A8RT-06 12 7188589 7188589 C T C1R Silent p.V403V 0.36 TCGA-Z2-A8RT-06 12 7249499 7249499 G A C1RL Missense_Mutation p.P318S 0.40 deleterious(0.02) benign(0.319) TCGA-Z2-A8RT-06 12 7285522 7285522 G C CLSTN3 Intron 0.45 TCGA-Z2-A8RT-06 12 7286249 7286249 C T CLSTN3 Silent p.L90L 0.35 TCGA-Z2-A8RT-06 12 7288479 7288479 G A CLSTN3 Silent p.G224G 0.32 TCGA-Z2-A8RT-06 12 73012732 73012732 G A TRHDE Missense_Mutation p.D750N 0.28 deleterious(0.01) benign(0.171) TCGA-Z2-A8RT-06 12 73056892 73056892 G A TRHDE Missense_Mutation p.E998K 0.28 deleterious(0) probably_damaging(0.932) TCGA-Z2-A8RT-06 12 7354878 7354878 C T PEX5 Silent p.S243S 0.28 TCGA-Z2-A8RT-06 12 7362888 7362888 C T PEX5 3'UTR 0.48 TCGA-Z2-A8RT-06 12 7525951 7525951 G A CD163L1 Missense_Mutation p.S1232F 0.36 deleterious(0) probably_damaging(0.953) TCGA-Z2-A8RT-06 12 75444263 75444263 A T KCNC2 Missense_Mutation p.F508I 0.40 deleterious(0.01) possibly_damaging(0.517) TCGA-Z2-A8RT-06 12 75444742 75444742 C T KCNC2 Missense_Mutation p.R348K 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-Z2-A8RT-06 12 7635340 7635340 G A CD163 Missense_Mutation p.S1049L 0.34 tolerated(0.35) benign(0.004) TCGA-Z2-A8RT-06 12 7802250 7802250 G A APOBEC1 Missense_Mutation p.H202Y 0.30 tolerated(0.1) benign(0.055) TCGA-Z2-A8RT-06 12 78401166 78401166 C T NAV3 Silent p.L616L 0.32 TCGA-Z2-A8RT-06 12 78511879 78511879 G A NAV3 Missense_Mutation p.E948K 0.40 tolerated(0.34) benign(0.279) TCGA-Z2-A8RT-06 12 78593212 78593212 C T NAV3 Missense_Mutation p.R2184C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 12 79685893 79685893 G A SYT1 Missense_Mutation p.D153N 0.38 tolerated(0.42) benign(0.066) TCGA-Z2-A8RT-06 12 7970469 7970469 C T SLC2A14 Nonsense_Mutation p.W434* 0.38 TCGA-Z2-A8RT-06 12 80655764 80655764 G A OTOGL Missense_Mutation p.M626I 0.37 deleterious(0.02) possibly_damaging(0.859) TCGA-Z2-A8RT-06 12 8075446 8075446 G A SLC2A3 Silent p.L415L 0.30 TCGA-Z2-A8RT-06 12 81283110 81283110 C T LIN7A Missense_Mutation p.E41K 0.38 tolerated(0.62) benign(0.035) TCGA-Z2-A8RT-06 12 81593164 81593164 C T ACSS3 Missense_Mutation p.T432I 0.29 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 81624916 81624916 C T ACSS3 Missense_Mutation p.P532L 0.31 deleterious(0) possibly_damaging(0.791) TCGA-Z2-A8RT-06 12 81657027 81657027 C T PPFIA2 Missense_Mutation p.R1233K 0.37 tolerated_low_confidence(1) benign(0.005) TCGA-Z2-A8RT-06 12 8377463 8377463 C T FAM90A1 5'UTR 0.20 TCGA-Z2-A8RT-06 12 86373805 86373805 G A MGAT4C Silent p.F233F 0.38 TCGA-Z2-A8RT-06 12 86373975 86373975 C T MGAT4C Missense_Mutation p.E177K 0.35 tolerated(0.18) benign(0.142) TCGA-Z2-A8RT-06 12 88429428 88429428 G A C12orf29 Translation_Start_Site p.M1? 0.41 tolerated(0.07) benign(0.034) TCGA-Z2-A8RT-06 12 8988136 8988136 G A A2ML1 Missense_Mutation p.E173K 0.30 deleterious(0.01) benign(0.158) TCGA-Z2-A8RT-06 12 91502158 91502158 G T LUM Missense_Mutation p.P200H 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 91552172 91552172 T C DCN Missense_Mutation p.K147E 0.37 deleterious(0.02) benign(0.002) TCGA-Z2-A8RT-06 12 9243902 9243902 G A A2M Silent p.A788A 0.39 TCGA-Z2-A8RT-06 12 9251322 9251322 G T A2M Missense_Mutation p.L578I 0.26 deleterious(0) benign(0.385) TCGA-Z2-A8RT-06 12 96104339 96104339 G A NTN4 Missense_Mutation p.R354C 0.48 tolerated(0.05) possibly_damaging(0.832) TCGA-Z2-A8RT-06 12 96104392 96104392 C T NTN4 Missense_Mutation p.G336E 0.26 tolerated(0.06) possibly_damaging(0.734) TCGA-Z2-A8RT-06 12 96370263 96370263 C T HAL Missense_Mutation p.D593N 0.33 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 12 96400135 96400135 G A LTA4H Missense_Mutation p.S496F 0.42 deleterious(0) probably_damaging(0.978) TCGA-Z2-A8RT-06 12 97158952 97158952 T C C12orf55 Missense_Mutation p.F2746S 0.33 deleterious(0) benign(0.001) TCGA-Z2-A8RT-06 12 97306491 97306491 C T NEDD1 Intron 0.35 TCGA-Z2-A8RT-06 12 98850281 98850281 T C SLC9A7P1 RNA 0.57 TCGA-Z2-A8RT-06 12 99640419 99640419 C T ANKS1B Silent p.L660L 0.24 TCGA-Z2-A8RT-06 13 100511114 100511114 G A CLYBL Splice_Site p.X84_splice 0.05 TCGA-Z2-A8RT-06 13 101881918 101881918 C T NALCN Silent p.R484R 0.07 TCGA-Z2-A8RT-06 13 103419748 103419748 G A TEX30 Missense_Mutation p.L127F 0.74 deleterious(0.02) probably_damaging(0.985) TCGA-Z2-A8RT-06 13 103718353 103718353 C T SLC10A2 Missense_Mutation p.G83R 0.75 deleterious(0) probably_damaging(0.953) TCGA-Z2-A8RT-06 13 108518355 108518355 C T FAM155A Missense_Mutation p.R197Q 0.10 tolerated(0.13) benign(0.031) TCGA-Z2-A8RT-06 13 109318403 109318403 C T MYO16 Silent p.F44F 0.06 TCGA-Z2-A8RT-06 13 109707898 109707898 G A MYO16 Missense_Mutation p.R1075Q 0.78 tolerated(0.08) probably_damaging(0.991) TCGA-Z2-A8RT-06 13 109707929 109707929 G A MYO16 Silent p.S1085S 0.79 TCGA-Z2-A8RT-06 13 110818636 110818636 G A COL4A1 Missense_Mutation p.P1322S 0.08 benign(0.168) TCGA-Z2-A8RT-06 13 110829382 110829382 C T COL4A1 Missense_Mutation p.D907N 0.68 probably_damaging(0.952) TCGA-Z2-A8RT-06 13 111996447 111996447 G A TEX29 Missense_Mutation p.E145K 0.74 tolerated(0.23) possibly_damaging(0.486) TCGA-Z2-A8RT-06 13 113536214 113536214 C T ATP11A 3'UTR 0.13 TCGA-Z2-A8RT-06 13 113739448 113739477 CTGAAGCCAGTGCAGAGGATCACCAAGTAC - MCF2L In_Frame_Del p.L735_Y744del 0.57 TCGA-Z2-A8RT-06 13 114312360 114312360 G A ATP4B Silent p.L34L 0.12 TCGA-Z2-A8RT-06 13 114789762 114789762 C T RASA3 Missense_Mutation p.E225K 0.06 deleterious(0.03) possibly_damaging(0.542) TCGA-Z2-A8RT-06 13 19747999 19747999 C T TUBA3C 3'UTR 0.56 TCGA-Z2-A8RT-06 13 20024289 20024289 G A TPTE2 Silent p.F300F 0.41 TCGA-Z2-A8RT-06 13 20763615 20763615 G A GJB2 Missense_Mutation p.L36F 0.59 tolerated(0.35) probably_damaging(1) TCGA-Z2-A8RT-06 13 21212535 21212535 C T IFT88 Missense_Mutation p.P493L 0.19 deleterious(0.01) benign(0.298) TCGA-Z2-A8RT-06 13 23911927 23911927 G A SACS Missense_Mutation p.P2030S 0.19 probably_damaging(0.998) TCGA-Z2-A8RT-06 13 23915548 23915548 G A SACS Missense_Mutation p.P823S 0.39 probably_damaging(0.998) TCGA-Z2-A8RT-06 13 25373602 25373602 C T RNF17 Missense_Mutation p.P490L 0.47 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 13 25399837 25399837 C T RNF17 Silent p.I724I 0.56 TCGA-Z2-A8RT-06 13 25671283 25671283 C T PABPC3 Missense_Mutation p.P316L 0.16 tolerated(0.07) possibly_damaging(0.817) TCGA-Z2-A8RT-06 13 27256968 27256968 C T WASF3 Missense_Mutation p.P403L 0.63 deleterious(0.03) benign(0.425) TCGA-Z2-A8RT-06 13 28959082 28959082 C T FLT1 Missense_Mutation p.G686S 0.52 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 13 29002021 29002021 G A FLT1 Missense_Mutation p.R382C 0.59 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 13 29007963 29007963 G A FLT1 Missense_Mutation p.P269L 0.54 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 13 29598752 29598752 C T MTUS2 5'UTR 0.81 TCGA-Z2-A8RT-06 13 31338238 31338238 C T ALOX5AP Missense_Mutation p.P161S 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 13 33638031 33638031 C T KL Missense_Mutation p.S916L 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-Z2-A8RT-06 13 34405420 34405420 C T RFC3 Silent p.I246I 0.43 TCGA-Z2-A8RT-06 13 36743171 36743171 T G SOHLH2 Nonstop_Mutation p.*503Yext*17 0.57 TCGA-Z2-A8RT-06 13 36900742 36900742 T C SPG20 Missense_Mutation p.S420G 0.19 deleterious(0) probably_damaging(0.925) TCGA-Z2-A8RT-06 13 38211695 38211695 G A TRPC4 Missense_Mutation p.S765F 0.12 tolerated(0.07) benign(0.012) TCGA-Z2-A8RT-06 13 38211696 38211696 A T TRPC4 Missense_Mutation p.S765T 0.12 tolerated(0.45) benign(0.138) TCGA-Z2-A8RT-06 13 38357272 38357272 C T TRPC4 Missense_Mutation p.D67N 0.54 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 13 39446931 39446931 C T FREM2 Missense_Mutation p.S2679F 0.49 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 13 39450283 39450283 T G FREM2 Missense_Mutation p.F2802L 0.51 tolerated(0.07) benign(0.007) TCGA-Z2-A8RT-06 13 41134733 41134733 G A FOXO1 Missense_Mutation p.P299S 0.54 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 13 41946372 41946372 C T NAA16 Missense_Mutation p.L661F 0.51 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 13 43538272 43538272 C T EPSTI1 Missense_Mutation p.G112E 0.47 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 13 43798244 43798244 G A ENOX1 Missense_Mutation p.P582L 0.53 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 13 46287734 46287734 G A SPERT Missense_Mutation p.E192K 0.15 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 13 49772665 49772665 C T FNDC3A Missense_Mutation p.T981I 0.07 deleterious(0) benign(0.392) TCGA-Z2-A8RT-06 13 52439487 52439487 G A CCDC70 5'UTR 0.13 TCGA-Z2-A8RT-06 13 52604388 52604388 C T UTP14C Missense_Mutation p.P483L 0.64 tolerated(0.76) benign(0.004) TCGA-Z2-A8RT-06 13 52854002 52854002 G A RP11-248G5.8 RNA 0.42 TCGA-Z2-A8RT-06 13 53603078 53603078 C T OLFM4 Missense_Mutation p.S36F 0.68 tolerated_low_confidence(0.41) unknown(0) TCGA-Z2-A8RT-06 13 58298910 58298910 G A PCDH17 Missense_Mutation p.E988K 0.08 deleterious(0.04) possibly_damaging(0.664) TCGA-Z2-A8RT-06 13 61986484 61986484 G A PCDH20 Missense_Mutation p.S583F 0.68 tolerated(0.14) benign(0.038) TCGA-Z2-A8RT-06 13 78130751 78130751 G A SCEL Missense_Mutation p.G22R 0.07 deleterious(0.04) benign(0.222) TCGA-Z2-A8RT-06 13 84454883 84454883 C T SLITRK1 Missense_Mutation p.E254K 0.70 deleterious(0.01) probably_damaging(0.976) TCGA-Z2-A8RT-06 13 88327881 88327881 C T SLITRK5 Missense_Mutation p.R80C 0.07 deleterious(0.04) possibly_damaging(0.513) TCGA-Z2-A8RT-06 13 88328462 88328462 G A SLITRK5 Silent p.R273R 0.76 TCGA-Z2-A8RT-06 13 88328984 88328984 G A SLITRK5 Missense_Mutation p.M447I 0.08 tolerated(0.27) benign(0.001) TCGA-Z2-A8RT-06 13 92380887 92380887 G A GPC5 Silent p.R374R 0.68 TCGA-Z2-A8RT-06 13 95768182 95768182 G A ABCC4 Silent p.F843F 0.06 TCGA-Z2-A8RT-06 13 96242634 96242634 C T DZIP1 Missense_Mutation p.R581K 0.78 deleterious(0.03) possibly_damaging(0.622) TCGA-Z2-A8RT-06 13 96242635 96242635 T A DZIP1 Nonsense_Mutation p.R581* 0.78 TCGA-Z2-A8RT-06 13 96274632 96274632 C T DZIP1 Missense_Mutation p.D359N 0.08 deleterious(0.01) probably_damaging(0.913) TCGA-Z2-A8RT-06 13 98116607 98116607 G A RAP2A Missense_Mutation p.E155K 0.11 deleterious(0.02) benign(0.057) TCGA-Z2-A8RT-06 13 99489773 99489773 A T DOCK9 Missense_Mutation p.L1407H 0.06 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 13 99948381 99948381 T C GPR183 Missense_Mutation p.N7D 0.73 tolerated(0.63) benign(0) TCGA-Z2-A8RT-06 14 101201072 101201072 G A DLK1 Missense_Mutation p.E331K 0.65 deleterious(0.03) probably_damaging(0.997) TCGA-Z2-A8RT-06 14 101405937 101405937 G A SNORD113-6 RNA 0.60 TCGA-Z2-A8RT-06 14 101512821 101512821 C T MIR487B RNA 0.74 TCGA-Z2-A8RT-06 14 102808526 102808526 C T ZNF839 3'UTR 0.65 TCGA-Z2-A8RT-06 14 104121047 104121047 T C KLC1 Missense_Mutation p.L49S 0.65 deleterious(0) possibly_damaging(0.668) TCGA-Z2-A8RT-06 14 104493130 104493130 C T TDRD9 Missense_Mutation p.L1046F 0.64 deleterious(0.05) possibly_damaging(0.515) TCGA-Z2-A8RT-06 14 105424002 105424002 G A AHNAK2 Silent p.G21G 0.47 TCGA-Z2-A8RT-06 14 106174412 106174412 C T IGHA1 Missense_Mutation p.R126Q 0.57 tolerated(0.36) benign(0.019) TCGA-Z2-A8RT-06 14 106471476 106471476 A C IGHV1-3 Missense_Mutation p.C41G 0.50 deleterious(0) probably_damaging(0.983) TCGA-Z2-A8RT-06 14 19553890 19553890 C T POTEG Silent p.I158I 0.11 TCGA-Z2-A8RT-06 14 20403841 20403841 G A OR4K1 Missense_Mutation p.E6K 0.57 tolerated(0.62) benign(0.001) TCGA-Z2-A8RT-06 14 20528446 20528446 G A OR4L1 Missense_Mutation p.M81I 0.77 deleterious(0.01) possibly_damaging(0.515) TCGA-Z2-A8RT-06 14 20711345 20711345 G A OR11H4 Missense_Mutation p.R132Q 0.67 deleterious(0.02) benign(0.406) TCGA-Z2-A8RT-06 14 21250268 21250268 C T RNASE6 Missense_Mutation p.P137L 0.74 deleterious(0.03) probably_damaging(0.986) TCGA-Z2-A8RT-06 14 21424364 21424364 G A RNASE2 Missense_Mutation p.R145Q 0.70 tolerated(0.77) benign(0.147) TCGA-Z2-A8RT-06 14 21871794 21871794 G A CHD8 Silent p.F1112F 0.33 TCGA-Z2-A8RT-06 14 23282435 23282435 G A SLC7A7 Missense_Mutation p.S58F 0.59 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 14 23512286 23512286 G A PSMB11 Silent p.G284G 0.60 TCGA-Z2-A8RT-06 14 23855271 23855271 C T MYH6 Missense_Mutation p.E1677K 0.66 deleterious(0) possibly_damaging(0.497) TCGA-Z2-A8RT-06 14 23902828 23902828 G A MYH7 Silent p.F38F 0.67 TCGA-Z2-A8RT-06 14 24527029 24527029 C T LRRC16B Silent p.L386L 0.44 TCGA-Z2-A8RT-06 14 24728324 24728324 G A TGM1 Silent p.V372V 0.65 TCGA-Z2-A8RT-06 14 24780837 24780837 G A LTB4R2 Missense_Mutation p.G323R 0.72 tolerated(0.16) probably_damaging(0.999) TCGA-Z2-A8RT-06 14 24884815 24884815 C T NYNRIN Missense_Mutation p.P1287L 0.60 deleterious_low_confidence(0) benign(0.33) TCGA-Z2-A8RT-06 14 30066942 30066942 A T PRKD1 Missense_Mutation p.F730Y 0.64 tolerated(0.06) probably_damaging(0.997) TCGA-Z2-A8RT-06 14 37283140 37283140 C T SLC25A21 Missense_Mutation p.M62I 0.70 deleterious(0.01) benign(0.002) TCGA-Z2-A8RT-06 14 45693322 45693322 T G MIS18BP1 Missense_Mutation p.E823A 0.70 deleterious(0.01) possibly_damaging(0.453) TCGA-Z2-A8RT-06 14 51223835 51223835 G A NIN Missense_Mutation p.L1305F 0.67 tolerated(0.09) possibly_damaging(0.89) TCGA-Z2-A8RT-06 14 51223836 51223836 G A NIN Silent p.F1304F 0.67 TCGA-Z2-A8RT-06 14 51237208 51237208 G A NIN Silent p.I444I 0.63 TCGA-Z2-A8RT-06 14 53190715 53190715 T C PSMC6 Missense_Mutation p.F352L 0.64 tolerated(0.09) possibly_damaging(0.519) TCGA-Z2-A8RT-06 14 55818466 55818466 C T FBXO34 Missense_Mutation p.S453F 0.72 deleterious(0.01) benign(0.341) TCGA-Z2-A8RT-06 14 60923721 60923721 A G C14orf39 Silent p.I424I 0.70 TCGA-Z2-A8RT-06 14 60938280 60938280 C T C14orf39 Missense_Mutation p.M167I 0.79 tolerated(0.13) benign(0.216) TCGA-Z2-A8RT-06 14 61180522 61180522 T A SIX4 Missense_Mutation p.K650I 0.77 deleterious_low_confidence(0.03) benign(0.232) TCGA-Z2-A8RT-06 14 64682046 64682046 C T SYNE2 Missense_Mutation p.T6459I 0.60 probably_damaging(0.999) TCGA-Z2-A8RT-06 14 64682047 64682047 C T SYNE2 Silent p.T6459T 0.61 TCGA-Z2-A8RT-06 14 64685135 64685135 C T SYNE2 Missense_Mutation p.P6521L 0.60 possibly_damaging(0.839) TCGA-Z2-A8RT-06 14 66208870 66208870 C T FUT8 Silent p.F490F 0.72 TCGA-Z2-A8RT-06 14 68215177 68215177 G A ZFYVE26 Silent p.A2532A 0.61 TCGA-Z2-A8RT-06 14 68257346 68257346 G A ZFYVE26 Missense_Mutation p.R900W 0.71 deleterious(0) benign(0.014) TCGA-Z2-A8RT-06 14 70527568 70527568 C T SLC8A3 Missense_Mutation p.E625K 0.51 tolerated(0.94) benign(0) TCGA-Z2-A8RT-06 14 70633621 70633621 G A SLC8A3 Missense_Mutation p.P507S 0.68 tolerated(0.4) benign(0.001) TCGA-Z2-A8RT-06 14 70634712 70634712 G A SLC8A3 Missense_Mutation p.S143F 0.61 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 14 70714231 70714231 G A ADAM21P1 RNA 0.59 TCGA-Z2-A8RT-06 14 71575586 71575586 C T PCNX Silent p.G2189G 0.66 TCGA-Z2-A8RT-06 14 74753361 74753361 G A ABCD4 Intron 0.61 TCGA-Z2-A8RT-06 14 74824938 74824938 G A VRTN Silent p.G484G 0.62 TCGA-Z2-A8RT-06 14 74876346 74876346 G A SYNDIG1L Silent p.C34C 0.67 TCGA-Z2-A8RT-06 14 74876396 74876396 G A SYNDIG1L Missense_Mutation p.H18Y 0.69 deleterious(0.02) benign(0.123) TCGA-Z2-A8RT-06 14 75514890 75514890 G A MLH3 Missense_Mutation p.S490F 0.61 tolerated(0.09) benign(0.137) TCGA-Z2-A8RT-06 14 77765872 77765872 G A POMT2 Silent p.V283V 0.63 TCGA-Z2-A8RT-06 14 90770421 90770421 G A NRDE2 Missense_Mutation p.P288L 0.65 tolerated(0.08) benign(0.019) TCGA-Z2-A8RT-06 14 94038362 94038362 G A UNC79 Silent p.P449P 0.60 TCGA-Z2-A8RT-06 14 94756629 94756629 G A SERPINA10 Missense_Mutation p.S101F 0.70 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 14 95088716 95088716 C T SERPINA3 Missense_Mutation p.S319L 0.69 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 14 95670583 95670583 G A CLMN Missense_Mutation p.S368F 0.72 deleterious(0.01) possibly_damaging(0.646) TCGA-Z2-A8RT-06 14 99640500 99640500 G A BCL11B Silent p.A891A 0.82 TCGA-Z2-A8RT-06 14 99723868 99723868 C T BCL11B Missense_Mutation p.E123K 0.64 deleterious(0.01) benign(0.097) TCGA-Z2-A8RT-06 15 100332124 100332124 G A AC090825.1 5'Flank 0.37 TCGA-Z2-A8RT-06 15 100332666 100332666 G A AC090825.1 3'Flank 0.36 TCGA-Z2-A8RT-06 15 100943012 100943012 T G CERS3 Missense_Mutation p.E353A 0.28 tolerated(0.17) benign(0.049) TCGA-Z2-A8RT-06 15 101024785 101024785 G A CERS3 Missense_Mutation p.P126L 0.43 deleterious(0) probably_damaging(0.959) TCGA-Z2-A8RT-06 15 20876460 20876460 C T NBEAP1 RNA 0.09 TCGA-Z2-A8RT-06 15 22332666 22332666 C T RP11-69H14.6 RNA 0.21 TCGA-Z2-A8RT-06 15 22368673 22368673 C T OR4M2 Missense_Mutation p.S33F 0.25 tolerated(0.5) benign(0) TCGA-Z2-A8RT-06 15 22368878 22368878 C T OR4M2 Silent p.L101L 0.23 TCGA-Z2-A8RT-06 15 22383072 22383072 C T OR4N4 Silent p.V200V 0.27 TCGA-Z2-A8RT-06 15 22705323 22705323 C T AC116165.1 3'Flank 0.38 TCGA-Z2-A8RT-06 15 22955148 22955148 C T CYFIP1 Silent p.I514I 0.38 TCGA-Z2-A8RT-06 15 23811327 23811327 C T MKRN3 Missense_Mutation p.S133L 0.40 tolerated(0.68) benign(0.002) TCGA-Z2-A8RT-06 15 23889597 23889597 C T MAGEL2 Missense_Mutation p.G495E 0.32 tolerated(0.29) possibly_damaging(0.559) TCGA-Z2-A8RT-06 15 23931699 23931699 C T NDN Nonsense_Mutation p.W222* 0.39 TCGA-Z2-A8RT-06 15 24922389 24922389 C T NPAP1 Missense_Mutation p.P459S 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-Z2-A8RT-06 15 24922857 24922857 G A NPAP1 Missense_Mutation p.G615R 0.32 tolerated(0.09) possibly_damaging(0.898) TCGA-Z2-A8RT-06 15 24922858 24922858 G A NPAP1 Missense_Mutation p.G615E 0.33 tolerated(0.25) possibly_damaging(0.898) TCGA-Z2-A8RT-06 15 24924307 24924307 C T NPAP1 Missense_Mutation p.S1098L 0.41 deleterious_low_confidence(0.04) benign(0.193) TCGA-Z2-A8RT-06 15 25331679 25331679 G A SNORD116-19 RNA 0.47 TCGA-Z2-A8RT-06 15 25335075 25335075 G A SNHG14 Intron 0.39 TCGA-Z2-A8RT-06 15 25415798 25415798 C T SNORD115-3 5'Flank 0.41 TCGA-Z2-A8RT-06 15 25430602 25430602 G A SNORD115-10 5'Flank 0.27 TCGA-Z2-A8RT-06 15 25446336 25446336 C T SNORD115-19 5'Flank 0.38 TCGA-Z2-A8RT-06 15 25463879 25463879 G A SNORD115-28 5'Flank 0.45 TCGA-Z2-A8RT-06 15 25468433 25468433 G A SNORD115-29 RNA 0.39 TCGA-Z2-A8RT-06 15 25473994 25473994 C T SNORD115-33 5'Flank 0.29 TCGA-Z2-A8RT-06 15 25486959 25486959 G A SNORD115-39 RNA 0.33 TCGA-Z2-A8RT-06 15 25488827 25488827 G A SNORD115-40 RNA 0.38 TCGA-Z2-A8RT-06 15 25492546 25492546 C T SNORD115-42 RNA 0.35 TCGA-Z2-A8RT-06 15 25928530 25928530 G A ATP10A Missense_Mutation p.S1132L 0.43 deleterious(0) benign(0.284) TCGA-Z2-A8RT-06 15 26793195 26793195 C T GABRB3 Silent p.R389R 0.27 TCGA-Z2-A8RT-06 15 26866681 26866681 C T GABRB3 Missense_Mutation p.D81N 0.31 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 28421728 28421728 C T HERC2 Missense_Mutation p.G3178S 0.33 probably_damaging(1) TCGA-Z2-A8RT-06 15 28492018 28492018 G A HERC2 Silent p.S1087S 0.28 TCGA-Z2-A8RT-06 15 31320575 31320575 C G TRPM1 Missense_Mutation p.A1102P 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-Z2-A8RT-06 15 33954369 33954369 G A RYR3 Silent p.L1546L 0.58 TCGA-Z2-A8RT-06 15 34131149 34131149 G A RYR3 Missense_Mutation p.R4323K 0.50 benign(0.002) TCGA-Z2-A8RT-06 15 34356460 34356460 G A CHRM5 Nonsense_Mutation p.W514* 0.34 TCGA-Z2-A8RT-06 15 35086956 35086956 C T ACTC1 Silent p.L18L 0.34 TCGA-Z2-A8RT-06 15 38228556 38228556 G A TMCO5A Missense_Mutation p.R11K 0.34 tolerated(0.49) benign(0.012) TCGA-Z2-A8RT-06 15 38773737 38773737 T G FAM98B Intron 0.38 TCGA-Z2-A8RT-06 15 38803816 38803816 C T RASGRP1 Missense_Mutation p.E319K 0.43 deleterious(0) possibly_damaging(0.889) TCGA-Z2-A8RT-06 15 40093337 40093337 G A GPR176 Missense_Mutation p.S515F 0.39 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-Z2-A8RT-06 15 40314722 40314722 C T EIF2AK4 Silent p.S1435S 0.34 TCGA-Z2-A8RT-06 15 40327382 40327382 A G EIF2AK4 3'UTR 0.37 TCGA-Z2-A8RT-06 15 40751242 40751242 C T BAHD1 Silent p.P193P 0.48 TCGA-Z2-A8RT-06 15 40758202 40758202 C T BAHD1 Missense_Mutation p.P739L 0.35 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 15 40758287 40758287 C T BAHD1 Silent p.V767V 0.35 TCGA-Z2-A8RT-06 15 41862326 41862326 C T TYRO3 Nonsense_Mutation p.R452* 0.28 TCGA-Z2-A8RT-06 15 42127076 42127076 C T JMJD7-PLA2G4B Missense_Mutation p.S68F 0.32 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-Z2-A8RT-06 15 42246072 42246072 G A EHD4 Silent p.I101I 0.37 TCGA-Z2-A8RT-06 15 42560157 42560157 G A TMEM87A Silent p.I93I 0.47 TCGA-Z2-A8RT-06 15 43569093 43569093 C T TGM7 Missense_Mutation p.G647E 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 43574773 43574773 G A TGM7 Silent p.L350L 0.25 TCGA-Z2-A8RT-06 15 43585109 43585109 G A TGM7 Silent p.F79F 0.35 TCGA-Z2-A8RT-06 15 43991245 43991245 G A CKMT1A Silent p.Q404Q 0.36 TCGA-Z2-A8RT-06 15 44109484 44109484 G A MFAP1 Missense_Mutation p.S81F 0.39 deleterious(0.05) possibly_damaging(0.485) TCGA-Z2-A8RT-06 15 45426504 45426504 T G DUOX1 Missense_Mutation p.F102V 0.42 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 15 45435389 45435389 G A DUOX1 Silent p.V608V 0.34 TCGA-Z2-A8RT-06 15 45559942 45559942 G A SLC28A2 Missense_Mutation p.E383K 0.32 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 45706912 45706912 C T SPATA5L1 Silent p.F526F 0.49 TCGA-Z2-A8RT-06 15 51216151 51216151 C T AP4E1 Silent p.L124L 0.35 TCGA-Z2-A8RT-06 15 51514629 51514629 G A CYP19A1 Missense_Mutation p.S182L 0.45 tolerated(0.4) benign(0.003) TCGA-Z2-A8RT-06 15 51520125 51520125 G A CYP19A1 Missense_Mutation p.S101L 0.43 deleterious(0) probably_damaging(0.975) TCGA-Z2-A8RT-06 15 52605858 52605858 G A MYO5A 3'UTR 0.27 TCGA-Z2-A8RT-06 15 52652179 52652179 G A MYO5A Missense_Mutation p.P1137S 0.56 tolerated(0.74) benign(0.001) TCGA-Z2-A8RT-06 15 54015042 54015042 C T WDR72 Missense_Mutation p.D73N 0.40 tolerated(0.08) probably_damaging(0.948) TCGA-Z2-A8RT-06 15 54025243 54025243 C T WDR72 Missense_Mutation p.G35E 0.38 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 54307324 54307324 C T UNC13C Nonsense_Mutation p.Q742* 0.50 TCGA-Z2-A8RT-06 15 54685326 54685326 G A UNC13C Silent p.L1598L 0.44 TCGA-Z2-A8RT-06 15 56141063 56141063 G A NEDD4 Missense_Mutation p.P804S 0.37 tolerated(0.09) possibly_damaging(0.612) TCGA-Z2-A8RT-06 15 56207964 56207964 G A NEDD4 Missense_Mutation p.L356F 0.37 tolerated_low_confidence(0.07) benign(0.045) TCGA-Z2-A8RT-06 15 56387137 56387137 G A RFX7 Missense_Mutation p.S930F 0.50 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-Z2-A8RT-06 15 57731239 57731239 G A CGNL1 Missense_Mutation p.G348R 0.44 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 15 58302916 58302916 C T ALDH1A2 Missense_Mutation p.G142S 0.37 tolerated(0.41) probably_damaging(0.92) TCGA-Z2-A8RT-06 15 58837971 58837971 G A LIPC Missense_Mutation p.G202E 0.46 deleterious(0) probably_damaging(0.973) TCGA-Z2-A8RT-06 15 59323442 59323442 C T RNF111 Missense_Mutation p.P141S 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 15 59910903 59910903 C T GCNT3 Missense_Mutation p.P156S 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-Z2-A8RT-06 15 60724178 60724178 G A NARG2 Missense_Mutation p.S839F 0.23 deleterious(0) probably_damaging(0.975) TCGA-Z2-A8RT-06 15 63908736 63908736 G A HERC1 Missense_Mutation p.P4612S 0.38 probably_damaging(1) TCGA-Z2-A8RT-06 15 63967231 63967231 G A HERC1 Nonsense_Mutation p.R2386* 0.37 TCGA-Z2-A8RT-06 15 65208001 65208001 C T ANKDD1A Missense_Mutation p.P14S 0.41 tolerated(0.08) probably_damaging(0.936) TCGA-Z2-A8RT-06 15 65208002 65208002 C T ANKDD1A Missense_Mutation p.P14L 0.40 tolerated(0.14) probably_damaging(0.971) TCGA-Z2-A8RT-06 15 65345451 65345451 G A SLC51B Silent p.E112E 0.36 TCGA-Z2-A8RT-06 15 65350772 65350772 G A RASL12 Nonsense_Mutation p.Q140* 0.40 TCGA-Z2-A8RT-06 15 65676480 65676480 G A IGDCC4 Missense_Mutation p.S1207F 0.55 deleterious_low_confidence(0.01) benign(0.219) TCGA-Z2-A8RT-06 15 65678272 65678272 G A IGDCC4 Missense_Mutation p.P1026L 0.48 deleterious(0.04) benign(0.002) TCGA-Z2-A8RT-06 15 65681298 65681298 G A IGDCC4 Missense_Mutation p.S852F 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-Z2-A8RT-06 15 65685745 65685745 G A IGDCC4 Silent p.S613S 0.45 TCGA-Z2-A8RT-06 15 67687797 67687797 G A IQCH Missense_Mutation p.E601K 0.32 deleterious(0.04) benign(0.037) TCGA-Z2-A8RT-06 15 68446022 68446022 C T PIAS1 Missense_Mutation p.S308F 0.30 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 15 69238134 69238134 T G SPESP1 Missense_Mutation p.N87K 0.36 tolerated(0.05) benign(0.391) TCGA-Z2-A8RT-06 15 69339869 69339869 C T NOX5 Silent p.I603I 0.30 TCGA-Z2-A8RT-06 15 69340180 69340180 A C NOX5 Silent p.R610R 0.39 TCGA-Z2-A8RT-06 15 69341399 69341399 G A NOX5 Splice_Site p.X667_splice 0.42 TCGA-Z2-A8RT-06 15 69740178 69740178 C T KIF23 3'UTR 0.39 TCGA-Z2-A8RT-06 15 70351119 70351119 G A TLE3 Silent p.S267S 0.29 TCGA-Z2-A8RT-06 15 71433895 71433895 G A THSD4 Missense_Mutation p.S10N 0.38 tolerated_low_confidence(0.18) benign(0.003) TCGA-Z2-A8RT-06 15 72646045 72646045 G A HEXA Missense_Mutation p.S149F 0.40 tolerated(0.06) probably_damaging(0.977) TCGA-Z2-A8RT-06 15 72968607 72968607 C T HIGD2B Missense_Mutation p.E37K 0.42 deleterious(0.02) benign(0.065) TCGA-Z2-A8RT-06 15 73470758 73470758 C T NEO1 Silent p.I427I 0.38 TCGA-Z2-A8RT-06 15 73562735 73562744 ACCAAAGGTC - NEO1 Frame_Shift_Del p.T933Efs*8 0.39 TCGA-Z2-A8RT-06 15 74363271 74363271 G A GOLGA6A Missense_Mutation p.P688S 0.11 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-Z2-A8RT-06 15 74373020 74373020 T C GOLGA6A Silent p.K47K 0.14 TCGA-Z2-A8RT-06 15 74425275 74425275 G A ISLR2 Silent p.A60A 0.37 TCGA-Z2-A8RT-06 15 74659817 74659817 C T CYP11A1 Missense_Mutation p.G37E 0.44 tolerated(0.15) benign(0.014) TCGA-Z2-A8RT-06 15 74706957 74706957 G A SEMA7A Nonsense_Mutation p.Q409* 0.42 TCGA-Z2-A8RT-06 15 75042386 75042386 G A CYP1A2 Missense_Mutation p.D103N 0.43 tolerated(0.07) benign(0.096) TCGA-Z2-A8RT-06 15 75499849 75499849 C T C15orf39 Missense_Mutation p.P487L 0.34 tolerated(0.14) possibly_damaging(0.851) TCGA-Z2-A8RT-06 15 75688684 75688684 G A SIN3A Nonsense_Mutation p.Q670* 0.40 TCGA-Z2-A8RT-06 15 78770697 78770697 T A IREB2 Missense_Mutation p.F418L 0.38 tolerated(0.18) benign(0.025) TCGA-Z2-A8RT-06 15 78770698 78770698 C T IREB2 Nonsense_Mutation p.R419* 0.38 TCGA-Z2-A8RT-06 15 78882557 78882557 C T CHRNA5 Missense_Mutation p.P275L 0.32 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 79317718 79317718 G A RASGRF1 Silent p.L494L 0.32 TCGA-Z2-A8RT-06 15 81234365 81234365 A C KIAA1199 Missense_Mutation p.M1195L 0.40 deleterious(0.01) probably_damaging(0.972) TCGA-Z2-A8RT-06 15 81650811 81650811 C T TMC3 Missense_Mutation p.A178T 0.29 tolerated(0.23) benign(0.007) TCGA-Z2-A8RT-06 15 83932004 83932004 G A BNC1 Missense_Mutation p.P667S 0.41 deleterious(0.02) benign(0.11) TCGA-Z2-A8RT-06 15 83933557 83933557 C T BNC1 Missense_Mutation p.G149E 0.31 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 15 85400264 85400264 C T ALPK3 Silent p.F967F 0.36 TCGA-Z2-A8RT-06 15 85487810 85487810 C T SLC28A1 Silent p.P559P 0.46 TCGA-Z2-A8RT-06 15 85681214 85681214 C T PDE8A 3'UTR 0.44 TCGA-Z2-A8RT-06 15 86813153 86813153 C T AGBL1 Silent p.F568F 0.54 TCGA-Z2-A8RT-06 15 88420151 88420151 G A NTRK3 3'UTR 0.51 TCGA-Z2-A8RT-06 15 88522557 88522557 G A NTRK3 Intron 0.29 TCGA-Z2-A8RT-06 15 88680748 88680748 C T NTRK3 Nonsense_Mutation p.W170* 0.35 TCGA-Z2-A8RT-06 15 89172576 89172576 C T AEN Silent p.F220F 0.36 TCGA-Z2-A8RT-06 15 89388959 89388959 G A ACAN Silent p.G425G 0.37 TCGA-Z2-A8RT-06 15 89388960 89388960 G A ACAN Missense_Mutation p.A426T 0.36 tolerated(0.22) unknown(0) TCGA-Z2-A8RT-06 15 89401462 89401462 C T ACAN Silent p.V1882V 0.33 TCGA-Z2-A8RT-06 15 89762282 89762282 C T RLBP1 5'UTR 0.32 TCGA-Z2-A8RT-06 15 90226633 90226633 G A PEX11A Missense_Mutation p.P240L 0.39 deleterious(0) probably_damaging(0.971) TCGA-Z2-A8RT-06 15 90226853 90226853 A G PEX11A Missense_Mutation p.F167L 0.40 tolerated(0.64) benign(0) TCGA-Z2-A8RT-06 15 91575691 91575691 C T AC068831.10 RNA 0.38 TCGA-Z2-A8RT-06 15 91769617 91769617 G A SV2B Missense_Mutation p.E42K 0.26 deleterious(0) benign(0.089) TCGA-Z2-A8RT-06 15 91832788 91832788 C T SV2B Silent p.F582F 0.37 TCGA-Z2-A8RT-06 15 93015724 93015724 C T C15orf32 Silent p.L116L 0.43 TCGA-Z2-A8RT-06 15 93588768 93588768 C T RGMA Silent p.E279E 0.38 TCGA-Z2-A8RT-06 15 94983416 94983416 C T MCTP2 Silent p.I699I 0.33 TCGA-Z2-A8RT-06 16 1257073 1257073 G A CACNA1H Silent p.R954R 0.50 TCGA-Z2-A8RT-06 16 12662559 12662559 C T SNX29 3'UTR 0.50 TCGA-Z2-A8RT-06 16 1291284 1291284 C T TPSAB1 Silent p.I64I 0.56 TCGA-Z2-A8RT-06 16 1392240 1392240 G A BAIAP3 Missense_Mutation p.D340N 0.43 deleterious(0.01) possibly_damaging(0.893) TCGA-Z2-A8RT-06 16 14025952 14025952 C T ERCC4 Intron 0.41 TCGA-Z2-A8RT-06 16 14029386 14029386 G A ERCC4 Missense_Mutation p.E533K 0.43 tolerated(0.4) benign(0.006) TCGA-Z2-A8RT-06 16 14758787 14758787 C T BFAR Missense_Mutation p.P340L 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 16 15692790 15692790 G A KIAA0430 Silent p.S1635S 0.39 TCGA-Z2-A8RT-06 16 15841924 15841924 G A MYH11 Silent p.V727V 0.29 TCGA-Z2-A8RT-06 16 15850300 15850300 G A MYH11 Silent p.F556F 0.39 TCGA-Z2-A8RT-06 16 1706254 1706254 C T CRAMP1L Missense_Mutation p.A499V 0.72 tolerated_low_confidence(0.11) benign(0.009) TCGA-Z2-A8RT-06 16 17211770 17211770 C T XYLT1 Missense_Mutation p.D764N 0.34 deleterious(0.03) probably_damaging(1) TCGA-Z2-A8RT-06 16 17221607 17221607 C T XYLT1 Silent p.E713E 0.34 TCGA-Z2-A8RT-06 16 17228346 17228346 C T XYLT1 Missense_Mutation p.G671R 0.33 tolerated(0.11) benign(0.315) TCGA-Z2-A8RT-06 16 18856762 18856762 G A SMG1 Missense_Mutation p.P2070S 0.24 deleterious(0.03) benign(0.443) TCGA-Z2-A8RT-06 16 19027806 19027806 G A TMC7 Missense_Mutation p.E116K 0.43 tolerated(0.69) benign(0.154) TCGA-Z2-A8RT-06 16 19067985 19067985 G A TMC7 Missense_Mutation p.E665K 0.50 deleterious(0.01) possibly_damaging(0.716) TCGA-Z2-A8RT-06 16 19468081 19468081 C T TMC5 Intron 0.43 TCGA-Z2-A8RT-06 16 2042973 2042973 C T SYNGR3 Missense_Mutation p.P197L 0.58 deleterious(0.01) benign(0.072) TCGA-Z2-A8RT-06 16 20476968 20476968 C T ACSM2A Silent p.L103L 0.30 TCGA-Z2-A8RT-06 16 20494495 20494495 G A ACSM2A Missense_Mutation p.R542K 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-Z2-A8RT-06 16 20792348 20792348 G A ACSM3 Missense_Mutation p.G279S 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 16 20946699 20946699 G A DNAH3 Missense_Mutation p.P3990S 0.42 deleterious(0.03) probably_damaging(0.967) TCGA-Z2-A8RT-06 16 20946754 20946754 G A DNAH3 Silent p.F3971F 0.38 TCGA-Z2-A8RT-06 16 20975063 20975063 G A DNAH3 Silent p.I3381I 0.46 TCGA-Z2-A8RT-06 16 21065813 21065813 G A DNAH3 Nonsense_Mutation p.Q1323* 0.41 TCGA-Z2-A8RT-06 16 21078700 21078700 C T DNAH3 Missense_Mutation p.R1141Q 0.44 tolerated(0.2) benign(0.015) TCGA-Z2-A8RT-06 16 21092965 21092965 G A DNAH3 Silent p.F987F 0.35 TCGA-Z2-A8RT-06 16 21145749 21145749 C T DNAH3 Missense_Mutation p.E305K 0.45 tolerated(0.08) probably_damaging(0.94) TCGA-Z2-A8RT-06 16 2149674 2149674 G A PKD1 Missense_Mutation p.L3341F 0.57 probably_damaging(0.986) TCGA-Z2-A8RT-06 16 2149675 2149675 G A PKD1 Silent p.I3340I 0.57 TCGA-Z2-A8RT-06 16 2164182 2164182 C T PKD1 Missense_Mutation p.G948R 0.62 possibly_damaging(0.821) TCGA-Z2-A8RT-06 16 21721223 21721223 C T OTOA Silent p.L373L 0.26 TCGA-Z2-A8RT-06 16 22126714 22126714 G A VWA3A Missense_Mutation p.G246S 0.31 tolerated(0.19) possibly_damaging(0.764) TCGA-Z2-A8RT-06 16 22268129 22268129 C T EEF2K Missense_Mutation p.H227Y 0.45 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 16 22316487 22316487 A G POLR3E Missense_Mutation p.Y16C 0.39 deleterious(0) benign(0.239) TCGA-Z2-A8RT-06 16 23543983 23543983 G A EARS2 Silent p.F354F 0.28 TCGA-Z2-A8RT-06 16 239138 239138 G A LUC7L 3'UTR 0.67 TCGA-Z2-A8RT-06 16 239141 239141 T G LUC7L 3'UTR 0.66 TCGA-Z2-A8RT-06 16 24372975 24372975 C T CACNG3 Silent p.L247L 0.38 TCGA-Z2-A8RT-06 16 24834284 24834284 C T TNRC6A Silent p.V1821V 0.40 TCGA-Z2-A8RT-06 16 26147614 26147614 C T HS3ST4 3'UTR 0.29 TCGA-Z2-A8RT-06 16 27237051 27237051 G A NSMCE1 Silent p.I239I 0.20 TCGA-Z2-A8RT-06 16 27455871 27455871 G A IL21R Silent p.R172R 0.31 TCGA-Z2-A8RT-06 16 27472731 27472731 G A GTF3C1 Silent p.T2090T 0.38 TCGA-Z2-A8RT-06 16 28137072 28137072 G A XPO6 Silent p.A568A 0.46 TCGA-Z2-A8RT-06 16 2814662 2814662 C T SRRM2 Missense_Mutation p.S1378F 0.70 benign(0.184) TCGA-Z2-A8RT-06 16 28181224 28181224 G A XPO6 Nonsense_Mutation p.Q138* 0.36 TCGA-Z2-A8RT-06 16 2834734 2834734 C T PRSS33 Missense_Mutation p.G252S 0.43 deleterious(0) possibly_damaging(0.874) TCGA-Z2-A8RT-06 16 28468226 28468226 G A NPIPB7 Missense_Mutation p.S255F 0.50 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-Z2-A8RT-06 16 28877609 28877609 C T SH2B1 Missense_Mutation p.S65F 0.28 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 29883553 29883553 G A SEZ6L2 Silent p.P886P 0.31 TCGA-Z2-A8RT-06 16 29918412 29918412 G A KCTD13 Silent p.A257A 0.49 TCGA-Z2-A8RT-06 16 30387496 30387496 G A MYLPF Missense_Mutation p.G43S 0.37 deleterious(0.02) probably_damaging(0.944) TCGA-Z2-A8RT-06 16 31159923 31159923 C A PRSS36 Missense_Mutation p.G116C 0.45 deleterious(0.01) probably_damaging(0.96) TCGA-Z2-A8RT-06 16 31424433 31424433 G A ITGAD Missense_Mutation p.G621E 0.36 tolerated(1) benign(0.019) TCGA-Z2-A8RT-06 16 31473604 31473604 C T ARMC5 Silent p.L246L 0.33 TCGA-Z2-A8RT-06 16 31473650 31473650 C T ARMC5 Missense_Mutation p.A261V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 33020693 33020693 G A IGHV3OR16-8 Missense_Mutation p.G34E 0.37 deleterious_low_confidence(0.04) probably_damaging(0.962) TCGA-Z2-A8RT-06 16 33020694 33020694 G A IGHV3OR16-8 Silent p.G34G 0.36 TCGA-Z2-A8RT-06 16 34739701 34739701 T C RP11-80F22.15 RNA 0.47 TCGA-Z2-A8RT-06 16 3533510 3533510 C T NAA60 Missense_Mutation p.P162L 0.60 tolerated(0.05) possibly_damaging(0.742) TCGA-Z2-A8RT-06 16 3639477 3639477 G A SLX4 Missense_Mutation p.P1388S 0.65 tolerated(0.57) benign(0.005) TCGA-Z2-A8RT-06 16 47163219 47163219 G A NETO2 Nonsense_Mutation p.R50* 0.34 TCGA-Z2-A8RT-06 16 48173167 48173167 G A ABCC12 Silent p.I246I 0.39 TCGA-Z2-A8RT-06 16 4833743 4833743 G A SEPT12 Silent p.F179F 0.76 TCGA-Z2-A8RT-06 16 50338308 50338308 G A ADCY7 Missense_Mutation p.R469K 0.51 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 16 51172904 51172904 G A SALL1 Missense_Mutation p.P1077S 0.43 tolerated(0.85) benign(0.007) TCGA-Z2-A8RT-06 16 51175866 51175866 G A SALL1 Silent p.P89P 0.39 TCGA-Z2-A8RT-06 16 52480018 52480018 A T TOX3 Missense_Mutation p.F265Y 0.40 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 16 55516950 55516950 G A MMP2 Missense_Mutation p.E95K 0.43 tolerated(0.14) benign(0.047) TCGA-Z2-A8RT-06 16 55519320 55519320 G A MMP2 Nonsense_Mutation p.W213* 0.44 TCGA-Z2-A8RT-06 16 55706016 55706016 C T SLC6A2 Silent p.L191L 0.35 TCGA-Z2-A8RT-06 16 55862749 55862749 G A CES1 Silent p.L64L 0.09 TCGA-Z2-A8RT-06 16 55903650 55903650 C T CES5A Missense_Mutation p.V171M 0.24 deleterious(0) possibly_damaging(0.677) TCGA-Z2-A8RT-06 16 55903651 55903651 C T CES5A Silent p.L170L 0.24 TCGA-Z2-A8RT-06 16 56669875 56669875 C T MT1M 3'Flank 0.35 TCGA-Z2-A8RT-06 16 56906356 56906356 G A SLC12A3 Missense_Mutation p.G316S 0.28 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 16 56913017 56913017 C T SLC12A3 Silent p.L405L 0.38 TCGA-Z2-A8RT-06 16 57147298 57147298 C T CPNE2 Silent p.F93F 0.37 TCGA-Z2-A8RT-06 16 57449713 57449713 C A CCL17 Missense_Mutation p.D75E 0.23 deleterious(0.01) probably_damaging(0.929) TCGA-Z2-A8RT-06 16 57490841 57490841 A G COQ9 Splice_Site p.X174_splice 0.29 TCGA-Z2-A8RT-06 16 57550375 57550375 C T CCDC102A Missense_Mutation p.E417K 0.32 deleterious(0.01) possibly_damaging(0.762) TCGA-Z2-A8RT-06 16 58712336 58712336 G C SLC38A7 Missense_Mutation p.P171R 0.33 tolerated(0.19) benign(0.002) TCGA-Z2-A8RT-06 16 61687823 61687823 G A CDH8 Missense_Mutation p.R697C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-A8RT-06 16 61687824 61687824 G A CDH8 Silent p.P696P 0.34 TCGA-Z2-A8RT-06 16 61761012 61761012 C T CDH8 Missense_Mutation p.G508R 0.26 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 16 66436574 66436574 C T CDH5 Silent p.F619F 0.38 TCGA-Z2-A8RT-06 16 67220558 67220558 G A EXOC3L1 Silent p.I429I 0.42 TCGA-Z2-A8RT-06 16 67261022 67261022 C T TMEM208 5'UTR 0.44 TCGA-Z2-A8RT-06 16 67470714 67470714 G A HSD11B2 Silent p.Q342Q 0.38 TCGA-Z2-A8RT-06 16 68191774 68191774 C T NFATC3 Silent p.L468L 0.33 TCGA-Z2-A8RT-06 16 69681348 69681348 C T NFAT5 Missense_Mutation p.P224L 0.43 probably_damaging(0.999) TCGA-Z2-A8RT-06 16 70162893 70162893 C T PDPR Missense_Mutation p.P159S 0.09 tolerated(0.15) benign(0.133) TCGA-Z2-A8RT-06 16 70176461 70176461 C T PDPR Silent p.L493L 0.28 TCGA-Z2-A8RT-06 16 70190855 70190855 C T PDPR 3'UTR 0.28 TCGA-Z2-A8RT-06 16 70305799 70305799 G A AARS Missense_Mutation p.P186S 0.41 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 16 70605079 70605079 C T SF3B3 Missense_Mutation p.R1164C 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 16 70711796 70711796 C T MTSS1L Missense_Mutation p.E211K 0.30 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 70913286 70913286 G A HYDIN Missense_Mutation p.P3491S 0.41 probably_damaging(0.932) TCGA-Z2-A8RT-06 16 70955078 70955078 C T HYDIN Missense_Mutation p.E2401K 0.27 probably_damaging(0.956) TCGA-Z2-A8RT-06 16 71012843 71012843 C T HYDIN Missense_Mutation p.E1538K 0.25 benign(0.351) TCGA-Z2-A8RT-06 16 716499 716499 C T WDR90 Silent p.A1595A 0.74 TCGA-Z2-A8RT-06 16 72828490 72828490 C T ZFHX3 Silent p.R2697R 0.45 TCGA-Z2-A8RT-06 16 72993158 72993158 G A ZFHX3 Missense_Mutation p.S296L 0.35 possibly_damaging(0.885) TCGA-Z2-A8RT-06 16 73127031 73127031 A G HCCAT5 RNA 0.32 TCGA-Z2-A8RT-06 16 74455130 74455130 G A CLEC18B Silent p.L13L 0.11 TCGA-Z2-A8RT-06 16 74491854 74491854 G A GLG1 Silent p.I1061I 0.34 TCGA-Z2-A8RT-06 16 74950105 74950105 G A WDR59 Missense_Mutation p.S340F 0.32 deleterious(0) possibly_damaging(0.56) TCGA-Z2-A8RT-06 16 75146259 75146259 G A LDHD Silent p.L507L 0.28 TCGA-Z2-A8RT-06 16 76461444 76461444 G A CNTNAP4 Nonsense_Mutation p.W137* 0.39 TCGA-Z2-A8RT-06 16 76569519 76569519 G A CNTNAP4 Missense_Mutation p.E872K 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 76587354 76587354 C T RP11-58C22.1 Missense_Mutation p.P14L 0.28 tolerated(0.33) benign(0.017) TCGA-Z2-A8RT-06 16 76587377 76587377 G A RP11-58C22.1 Missense_Mutation p.E22K 0.19 deleterious(0.02) benign(0.206) TCGA-Z2-A8RT-06 16 77918561 77918561 C T VAT1L Silent p.I313I 0.29 TCGA-Z2-A8RT-06 16 78005753 78005753 G A VAT1L Missense_Mutation p.E362K 0.37 tolerated(0.05) possibly_damaging(0.906) TCGA-Z2-A8RT-06 16 78064472 78064472 G A CLEC3A Missense_Mutation p.E119K 0.43 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 78064767 78064767 G A CLEC3A 3'UTR 0.40 TCGA-Z2-A8RT-06 16 79633628 79633628 T G MAF Missense_Mutation p.T58P 0.40 deleterious(0) unknown(0) TCGA-Z2-A8RT-06 16 80577194 80577194 A G DYNLRB2 Missense_Mutation p.K9E 0.47 tolerated(0.07) possibly_damaging(0.716) TCGA-Z2-A8RT-06 16 836034 836034 G A RPUSD1 Silent p.P285P 0.80 TCGA-Z2-A8RT-06 16 83711867 83711867 G A CDH13 Missense_Mutation p.E494K 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-Z2-A8RT-06 16 83781802 83781802 C T CDH13 Missense_Mutation p.S590F 0.43 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 16 84031831 84031831 G A NECAB2 Missense_Mutation p.E291K 0.45 deleterious(0.03) probably_damaging(0.995) TCGA-Z2-A8RT-06 16 84205874 84205874 C T DNAAF1 Missense_Mutation p.P513S 0.24 tolerated(0.34) benign(0.009) TCGA-Z2-A8RT-06 16 84456112 84456112 C T ATP2C2 Silent p.F247F 0.32 TCGA-Z2-A8RT-06 16 84456806 84456806 C T ATP2C2 Missense_Mutation p.P286S 0.51 deleterious(0) probably_damaging(0.938) TCGA-Z2-A8RT-06 16 85838540 85838540 C T COX4I1 Intron 0.27 TCGA-Z2-A8RT-06 16 85942679 85942679 G A IRF8 Silent p.L86L 0.22 TCGA-Z2-A8RT-06 16 88690368 88690368 C T ZC3H18 Missense_Mutation p.S599F 0.32 deleterious_low_confidence(0.01) benign(0.341) TCGA-Z2-A8RT-06 16 8889661 8889661 G A TMEM186 3'UTR 0.56 TCGA-Z2-A8RT-06 16 8906942 8906942 C T PMM2 Silent p.F206F 0.60 TCGA-Z2-A8RT-06 16 89348576 89348576 C T ANKRD11 Silent p.E1458E 0.33 TCGA-Z2-A8RT-06 16 89702954 89702954 C T DPEP1 Silent p.A128A 0.36 TCGA-Z2-A8RT-06 16 89774285 89774285 C T VPS9D1 Missense_Mutation p.G627E 0.29 deleterious(0.01) benign(0.116) TCGA-Z2-A8RT-06 16 8995939 8995939 G A USP7 Missense_Mutation p.H683Y 0.59 tolerated(0.18) benign(0.018) TCGA-Z2-A8RT-06 17 10247235 10247235 G A MYH13 Silent p.I592I 0.41 TCGA-Z2-A8RT-06 17 10267784 10267784 T G MYH13 Missense_Mutation p.K22Q 0.22 tolerated(0.06) probably_damaging(0.936) TCGA-Z2-A8RT-06 17 10304070 10304070 T A MYH8 Missense_Mutation p.E1124D 0.36 deleterious(0.01) benign(0.319) TCGA-Z2-A8RT-06 17 10318877 10318877 T G MYH8 Missense_Mutation p.K187T 0.38 deleterious(0.01) possibly_damaging(0.77) TCGA-Z2-A8RT-06 17 10348445 10348445 C T MYH4 Missense_Mutation p.E1772K 0.35 deleterious(0.01) possibly_damaging(0.903) TCGA-Z2-A8RT-06 17 10354161 10354161 G A MYH4 Missense_Mutation p.S1306F 0.41 deleterious(0.02) possibly_damaging(0.721) TCGA-Z2-A8RT-06 17 10358287 10358287 T G MYH4 Missense_Mutation p.R802S 0.42 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 10395657 10395657 C T MYH1 3'UTR 0.28 TCGA-Z2-A8RT-06 17 10406392 10406392 C T MYH1 Silent p.K955K 0.32 TCGA-Z2-A8RT-06 17 10411972 10411972 G A MYH1 Silent p.S535S 0.33 TCGA-Z2-A8RT-06 17 10417210 10417210 G A MYH1 Silent p.I223I 0.36 TCGA-Z2-A8RT-06 17 10426639 10426639 C T MYH2 Missense_Mutation p.E1855K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 10432244 10432244 C T MYH2 Missense_Mutation p.M1169I 0.36 tolerated(0.27) benign(0.048) TCGA-Z2-A8RT-06 17 10432497 10432497 C T MYH2 Silent p.K1112K 0.39 TCGA-Z2-A8RT-06 17 10432995 10432995 C T MYH2 Silent p.E1001E 0.38 TCGA-Z2-A8RT-06 17 10435043 10435043 T C MYH2 Silent p.E868E 0.39 TCGA-Z2-A8RT-06 17 10438434 10438434 C T MYH2 Silent p.R712R 0.46 TCGA-Z2-A8RT-06 17 10440731 10440731 G A MYH2 Silent p.V572V 0.36 TCGA-Z2-A8RT-06 17 10440745 10440745 T G MYH2 Missense_Mutation p.K568Q 0.35 deleterious(0.03) possibly_damaging(0.851) TCGA-Z2-A8RT-06 17 10441026 10441026 C T MYH2 Missense_Mutation p.D515N 0.38 deleterious(0) probably_damaging(0.973) TCGA-Z2-A8RT-06 17 10441111 10441111 C T MYH2 Silent p.E486E 0.39 TCGA-Z2-A8RT-06 17 10543113 10543113 C T MYH3 Missense_Mutation p.E897K 0.38 deleterious(0) benign(0.041) TCGA-Z2-A8RT-06 17 11520771 11520771 C T DNAH9 Silent p.L316L 0.36 TCGA-Z2-A8RT-06 17 11520772 11520772 C T DNAH9 Nonsense_Mutation p.Q317* 0.39 TCGA-Z2-A8RT-06 17 11603098 11603098 C T DNAH9 Silent p.F1641F 0.44 TCGA-Z2-A8RT-06 17 12647640 12647640 C T MYOCD Silent p.Y286Y 0.22 TCGA-Z2-A8RT-06 17 12656632 12656632 C T MYOCD Missense_Mutation p.S676L 0.37 tolerated(0.14) possibly_damaging(0.815) TCGA-Z2-A8RT-06 17 12666495 12666495 C T MYOCD Missense_Mutation p.S832F 0.47 tolerated(0.07) possibly_damaging(0.789) TCGA-Z2-A8RT-06 17 12844442 12844442 G A ARHGAP44 Splice_Site p.X217_splice 0.24 TCGA-Z2-A8RT-06 17 12897060 12897060 G A ELAC2 Missense_Mutation p.P733S 0.41 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 1548130 1548130 G A SCARF1 Missense_Mutation p.S88F 0.24 deleterious(0) possibly_damaging(0.864) TCGA-Z2-A8RT-06 17 1657639 1657639 C T SERPINF2 Silent p.F429F 0.39 TCGA-Z2-A8RT-06 17 16593985 16593985 G A CCDC144A Missense_Mutation p.G91S 0.37 deleterious_low_confidence(0.02) probably_damaging(0.909) TCGA-Z2-A8RT-06 17 16855764 16855764 G A TNFRSF13B Silent p.F65F 0.31 TCGA-Z2-A8RT-06 17 18025241 18025241 G A MYO15A Missense_Mutation p.D1043N 0.38 unknown(0) TCGA-Z2-A8RT-06 17 18284975 18284975 G A EVPLL Missense_Mutation p.E93K 0.41 deleterious(0) probably_damaging(0.913) TCGA-Z2-A8RT-06 17 19699015 19699015 G A ULK2 Missense_Mutation p.S674L 0.34 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 17 2270686 2270686 C T SGSM2 Silent p.P470P 0.33 TCGA-Z2-A8RT-06 17 2573527 2573527 C T PAFAH1B1 Missense_Mutation p.S157L 0.39 tolerated(0.06) benign(0.445) TCGA-Z2-A8RT-06 17 25931746 25931746 G A KSR1 Missense_Mutation p.E421K 0.24 tolerated(0.42) benign(0.001) TCGA-Z2-A8RT-06 17 2600138 2600138 G A CLUH Missense_Mutation p.S649F 0.38 deleterious(0.03) benign(0.19) TCGA-Z2-A8RT-06 17 26604233 26604233 G A AC061975.8 5'Flank 0.25 TCGA-Z2-A8RT-06 17 26864520 26864520 C T FOXN1 3'UTR 0.40 TCGA-Z2-A8RT-06 17 26964168 26964168 C T KIAA0100 Missense_Mutation p.D598N 0.40 deleterious(0.03) probably_damaging(0.993) TCGA-Z2-A8RT-06 17 27026854 27026854 C A SUPT6H Missense_Mutation p.P1502T 0.32 tolerated(0.62) benign(0.053) TCGA-Z2-A8RT-06 17 27026855 27026855 C T SUPT6H Missense_Mutation p.P1502L 0.32 tolerated(0.38) benign(0.306) TCGA-Z2-A8RT-06 17 27030623 27030623 C T PROCA1 Missense_Mutation p.V322I 0.34 tolerated(0.08) benign(0.036) TCGA-Z2-A8RT-06 17 27051454 27051454 G A TLCD1 3'UTR 0.39 TCGA-Z2-A8RT-06 17 27051455 27051455 G A TLCD1 3'UTR 0.40 TCGA-Z2-A8RT-06 17 27067623 27067623 G A NEK8 Silent p.G520G 0.39 TCGA-Z2-A8RT-06 17 27420008 27420008 C T MYO18A Silent p.R1646R 0.23 TCGA-Z2-A8RT-06 17 27441050 27441050 G A MYO18A Silent p.D859D 0.48 TCGA-Z2-A8RT-06 17 27893358 27893358 G A ABHD15 Silent p.F209F 0.22 TCGA-Z2-A8RT-06 17 28776636 28776636 C T CPD Missense_Mutation p.S980F 0.40 tolerated(0.07) probably_damaging(0.924) TCGA-Z2-A8RT-06 17 28778760 28778760 C T CPD Missense_Mutation p.P1034L 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 2995854 2995854 G A OR1D2 Missense_Mutation p.S146F 0.38 tolerated(0.14) benign(0.014) TCGA-Z2-A8RT-06 17 30179956 30179956 G A COPRS Missense_Mutation p.S87F 0.37 tolerated(0.2) benign(0.103) TCGA-Z2-A8RT-06 17 30377037 30377037 C T LRRC37B Missense_Mutation p.P898S 0.41 tolerated(0.11) benign(0.015) TCGA-Z2-A8RT-06 17 30533973 30533973 C T RHOT1 Silent p.I487I 0.40 TCGA-Z2-A8RT-06 17 3118961 3118961 G A OR1A1 Missense_Mutation p.G16E 0.41 deleterious(0) possibly_damaging(0.901) TCGA-Z2-A8RT-06 17 32964249 32964249 C T TMEM132E Silent p.L651L 0.39 TCGA-Z2-A8RT-06 17 33310546 33310546 G A LIG3 Silent p.K174K 0.42 TCGA-Z2-A8RT-06 17 33467041 33467041 G A NLE1 Silent p.I69I 0.38 TCGA-Z2-A8RT-06 17 33497248 33497248 C T UNC45B Silent p.L555L 0.41 TCGA-Z2-A8RT-06 17 34074037 34074037 C T GAS2L2 Silent p.L361L 0.41 TCGA-Z2-A8RT-06 17 34171082 34171082 C T TAF15 Silent p.G336G 0.46 TCGA-Z2-A8RT-06 17 34234326 34234326 C T AC015849.16 RNA 0.30 TCGA-Z2-A8RT-06 17 34236494 34236494 C T AC015849.16 RNA 0.50 TCGA-Z2-A8RT-06 17 34236495 34236495 C T AC015849.16 RNA 0.51 TCGA-Z2-A8RT-06 17 34236529 34236529 G A AC015849.16 RNA 0.30 TCGA-Z2-A8RT-06 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.11 TCGA-Z2-A8RT-06 17 35487132 35487132 C T ACACA Missense_Mutation p.E1898K 0.37 deleterious(0.03) probably_damaging(0.975) TCGA-Z2-A8RT-06 17 35536293 35536293 G A ACACA Missense_Mutation p.P1663S 0.40 tolerated(0.4) benign(0.034) TCGA-Z2-A8RT-06 17 35748704 35748704 G A C17orf78 3'UTR 0.39 TCGA-Z2-A8RT-06 17 3594318 3594318 C T P2RX5 Missense_Mutation p.E98K 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-Z2-A8RT-06 17 36522209 36522209 C T SOCS7 Missense_Mutation p.S367F 0.40 deleterious(0.01) possibly_damaging(0.54) TCGA-Z2-A8RT-06 17 3655041 3655041 G A ITGAE Missense_Mutation p.A599V 0.40 deleterious(0) possibly_damaging(0.871) TCGA-Z2-A8RT-06 17 3662791 3662791 C T ITGAE Silent p.R257R 0.43 TCGA-Z2-A8RT-06 17 37119103 37119103 A G FBXO47 Missense_Mutation p.L59S 0.37 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 17 37187326 37187326 A C CTD-2206N4.2 5'Flank 0.38 TCGA-Z2-A8RT-06 17 37563715 37563715 G A MED1 3'UTR 0.36 TCGA-Z2-A8RT-06 17 3769166 3769166 G A CAMKK1 3'UTR 0.28 TCGA-Z2-A8RT-06 17 3779700 3779700 G A CAMKK1 Silent p.I309I 0.41 TCGA-Z2-A8RT-06 17 3788796 3788796 G A CAMKK1 Silent p.L62L 0.31 TCGA-Z2-A8RT-06 17 37898852 37898852 C T GRB7 Silent p.S86S 0.40 TCGA-Z2-A8RT-06 17 3802950 3802950 G C P2RX1 Missense_Mutation p.L285V 0.39 tolerated(1) benign(0.021) TCGA-Z2-A8RT-06 17 38063222 38063222 G A GSDMB Missense_Mutation p.S240F 0.46 tolerated(0.15) benign(0.003) TCGA-Z2-A8RT-06 17 38133205 38133205 T G GSDMA Missense_Mutation p.V411G 0.41 deleterious(0) possibly_damaging(0.807) TCGA-Z2-A8RT-06 17 38318378 38318378 C T CASC3 Nonsense_Mutation p.R194* 0.32 TCGA-Z2-A8RT-06 17 38320163 38320163 C T CASC3 Silent p.S405S 0.40 TCGA-Z2-A8RT-06 17 38320164 38320164 C T CASC3 Missense_Mutation p.R406W 0.40 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-Z2-A8RT-06 17 38449754 38449754 T A CDC6 Nonsense_Mutation p.L236* 0.40 TCGA-Z2-A8RT-06 17 38643569 38643569 C T TNS4 Missense_Mutation p.R336K 0.44 tolerated(0.6) benign(0.021) TCGA-Z2-A8RT-06 17 38813721 38813721 G A KRT222 Missense_Mutation p.S181F 0.31 tolerated(0.21) benign(0.169) TCGA-Z2-A8RT-06 17 38859433 38859433 T A KRT24 Missense_Mutation p.K171N 0.37 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 17 38926276 38926276 C T KRT26 Silent p.R260R 0.38 TCGA-Z2-A8RT-06 17 39041435 39041435 C T KRT20 Translation_Start_Site p.M1? 0.59 deleterious(0) benign(0.019) TCGA-Z2-A8RT-06 17 39155773 39155773 T G KRTAP3-2 3'UTR 0.38 TCGA-Z2-A8RT-06 17 39191082 39191082 G A KRTAP1-3 5'UTR 0.40 TCGA-Z2-A8RT-06 17 39197224 39197224 G A KRTAP1-1 Silent p.S142S 0.35 TCGA-Z2-A8RT-06 17 39262211 39262211 C T KRTAP4-9 Missense_Mutation p.R191C 0.30 deleterious(0.01) unknown(0) TCGA-Z2-A8RT-06 17 39538160 39538160 G A KRT34 Silent p.L155L 0.43 TCGA-Z2-A8RT-06 17 39552805 39552805 C T KRT31 Missense_Mutation p.R152Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 17 39579902 39579902 C T KRT37 Intron 0.55 TCGA-Z2-A8RT-06 17 39597150 39597150 G A KRT38 Silent p.S8S 0.31 TCGA-Z2-A8RT-06 17 39637008 39637008 C T KRT35 Silent p.K114K 0.33 TCGA-Z2-A8RT-06 17 39642641 39642641 G A KRT36 Missense_Mutation p.S464F 0.35 tolerated_low_confidence(0.65) benign(0.064) TCGA-Z2-A8RT-06 17 39644538 39644538 G A KRT36 Missense_Mutation p.S219F 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 39658491 39658491 G A KRT13 Intron 0.20 TCGA-Z2-A8RT-06 17 39726233 39726233 C T KRT9 Missense_Mutation p.D254N 0.44 deleterious(0.02) benign(0.284) TCGA-Z2-A8RT-06 17 39727620 39727620 C T KRT9 Missense_Mutation p.D209N 0.39 deleterious(0.04) benign(0.069) TCGA-Z2-A8RT-06 17 39775933 39775933 G A KRT17 Silent p.T404T 0.48 TCGA-Z2-A8RT-06 17 3978583 3978583 G A ZZEF1 Silent p.F1125F 0.35 TCGA-Z2-A8RT-06 17 4017683 4017683 G A ZZEF1 Missense_Mutation p.S259F 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 40267839 40267839 G A KAT2A Missense_Mutation p.H593Y 0.44 deleterious(0.04) probably_damaging(0.93) TCGA-Z2-A8RT-06 17 40328122 40328122 G A KCNH4 Missense_Mutation p.S260L 0.41 tolerated(0.06) benign(0.019) TCGA-Z2-A8RT-06 17 40384067 40384067 G A STAT5B Missense_Mutation p.P27S 0.42 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 17 40706846 40706846 G A HSD17B1 Missense_Mutation p.E293K 0.42 tolerated(0.66) benign(0.039) TCGA-Z2-A8RT-06 17 40716061 40716061 C T COASY Silent p.S290S 0.41 TCGA-Z2-A8RT-06 17 40997342 40997342 C T AOC2 Silent p.F233F 0.36 TCGA-Z2-A8RT-06 17 41004428 41004428 A T AOC3 Silent p.G356G 0.42 TCGA-Z2-A8RT-06 17 41008666 41008666 C T AOC3 3'UTR 0.37 TCGA-Z2-A8RT-06 17 41020212 41020212 C T AOC4P RNA 0.44 TCGA-Z2-A8RT-06 17 41020360 41020360 G A AOC4P RNA 0.40 TCGA-Z2-A8RT-06 17 41367881 41367881 G A TMEM106A Missense_Mutation p.R117Q 0.37 deleterious(0.02) probably_damaging(0.973) TCGA-Z2-A8RT-06 17 42170054 42170054 G A HDAC5 Silent p.L255L 0.37 TCGA-Z2-A8RT-06 17 42249609 42249609 G A ASB16 Missense_Mutation p.G166E 0.43 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 17 42268356 42268356 C T TMUB2 3'UTR 0.43 TCGA-Z2-A8RT-06 17 42333120 42333120 G A SLC4A1 Missense_Mutation p.S574F 0.38 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 42338084 42338084 C T SLC4A1 Missense_Mutation p.E90K 0.38 tolerated(0.06) benign(0.005) TCGA-Z2-A8RT-06 17 42397587 42397587 G A SLC25A39 Missense_Mutation p.S314L 0.39 tolerated(0.12) benign(0.157) TCGA-Z2-A8RT-06 17 42478538 42478538 A C GPATCH8 Missense_Mutation p.S303A 0.37 deleterious(0.03) possibly_damaging(0.832) TCGA-Z2-A8RT-06 17 42744571 42744571 C T C17orf104 Missense_Mutation p.P431L 0.39 deleterious(0) benign(0.402) TCGA-Z2-A8RT-06 17 43893903 43893903 C T CRHR1 Missense_Mutation p.R66W 0.44 tolerated(0.08) probably_damaging(0.981) TCGA-Z2-A8RT-06 17 43924123 43924123 C T SPPL2C Silent p.I617I 0.37 TCGA-Z2-A8RT-06 17 4542846 4542846 C A ALOX15 Missense_Mutation p.K72N 0.40 tolerated(0.07) benign(0.035) TCGA-Z2-A8RT-06 17 46607119 46607119 C T HOXB1 Silent p.R232R 0.33 TCGA-Z2-A8RT-06 17 46620597 46620597 G A HOXB2 Missense_Mutation p.P302S 0.46 tolerated(0.21) probably_damaging(0.996) TCGA-Z2-A8RT-06 17 46862397 46862397 G A TTLL6 Missense_Mutation p.P643L 0.34 tolerated(0.11) benign(0.226) TCGA-Z2-A8RT-06 17 47038273 47038273 C T GIP Missense_Mutation p.D143N 0.33 deleterious(0.02) possibly_damaging(0.576) TCGA-Z2-A8RT-06 17 47103000 47103000 G A IGF2BP1 Missense_Mutation p.R86Q 0.46 tolerated(0.05) possibly_damaging(0.595) TCGA-Z2-A8RT-06 17 47119688 47119688 A T IGF2BP1 Missense_Mutation p.E342D 0.41 deleterious(0.03) probably_damaging(0.992) TCGA-Z2-A8RT-06 17 47788805 47788805 G A FAM117A Missense_Mutation p.P392S 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 4795522 4795522 C T MINK1 Missense_Mutation p.R694C 0.47 deleterious(0.01) benign(0.001) TCGA-Z2-A8RT-06 17 48213475 48213475 C T PPP1R9B Missense_Mutation p.E719K 0.34 tolerated(0.22) possibly_damaging(0.601) TCGA-Z2-A8RT-06 17 48669172 48669172 G A CACNA1G Silent p.K904K 0.32 TCGA-Z2-A8RT-06 17 48674270 48674270 G A CACNA1G Missense_Mutation p.E1082K 0.33 tolerated(0.07) benign(0.007) TCGA-Z2-A8RT-06 17 48745151 48745151 C T ABCC3 Intron 0.31 TCGA-Z2-A8RT-06 17 4892819 4892819 C T INCA1 Missense_Mutation p.G100E 0.43 tolerated(0.05) possibly_damaging(0.559) TCGA-Z2-A8RT-06 17 4905892 4905892 C T KIF1C Missense_Mutation p.S188F 0.41 deleterious(0) possibly_damaging(0.772) TCGA-Z2-A8RT-06 17 49280072 49280072 G A MBTD1 Silent p.F351F 0.35 TCGA-Z2-A8RT-06 17 5058876 5058876 G A USP6 Missense_Mutation p.E935K 0.32 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-Z2-A8RT-06 17 53014733 53014733 C T TOM1L1 Intron 0.44 TCGA-Z2-A8RT-06 17 54428127 54428127 G A ANKFN1 Nonsense_Mutation p.W66* 0.35 TCGA-Z2-A8RT-06 17 54535282 54535282 C T ANKFN1 Missense_Mutation p.S503F 0.52 deleterious(0) probably_damaging(0.972) TCGA-Z2-A8RT-06 17 5462613 5462613 G A NLRP1 Missense_Mutation p.P468L 0.38 tolerated(0.15) benign(0.346) TCGA-Z2-A8RT-06 17 5462971 5462971 C T NLRP1 Missense_Mutation p.E349K 0.42 tolerated(0.5) benign(0.105) TCGA-Z2-A8RT-06 17 56232698 56232698 C T OR4D1 Silent p.L62L 0.38 TCGA-Z2-A8RT-06 17 56396621 56396621 C T BZRAP1 Missense_Mutation p.S510N 0.29 tolerated(0.08) benign(0.111) TCGA-Z2-A8RT-06 17 56439953 56439953 G A RNF43 Silent p.I213I 0.38 TCGA-Z2-A8RT-06 17 56620568 56620568 C T C17orf47 Missense_Mutation p.G327E 0.37 tolerated(0.29) probably_damaging(0.988) TCGA-Z2-A8RT-06 17 58136792 58136792 G A HEATR6 Missense_Mutation p.R572C 0.35 tolerated(0.16) benign(0.01) TCGA-Z2-A8RT-06 17 58512635 58512635 C T C17orf64 3'Flank 0.34 TCGA-Z2-A8RT-06 17 59485447 59485447 C T TBX2 Silent p.F573F 0.37 TCGA-Z2-A8RT-06 17 59971185 59971185 G A INTS2 Missense_Mutation p.H555Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 17 60072570 60072570 A T MED13 Silent p.L708L 0.39 TCGA-Z2-A8RT-06 17 60493647 60493647 G A EFCAB3 Missense_Mutation p.G477E 0.34 tolerated(0.09) benign(0.018) TCGA-Z2-A8RT-06 17 60501239 60501239 G A METTL2A 5'UTR 0.80 TCGA-Z2-A8RT-06 17 61972274 61972274 G A CSH1 3'Flank 0.28 TCGA-Z2-A8RT-06 17 62126542 62126542 A T ERN1 Missense_Mutation p.F758L 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 62141390 62141390 C T ERN1 Missense_Mutation p.S348N 0.35 tolerated(0.14) benign(0.03) TCGA-Z2-A8RT-06 17 62859286 62859286 G A LRRC37A3 Intron 0.32 TCGA-Z2-A8RT-06 17 62893182 62893182 G A LRRC37A3 Missense_Mutation p.S65F 0.13 deleterious(0) possibly_damaging(0.804) TCGA-Z2-A8RT-06 17 63221580 63221580 G A RGS9 Missense_Mutation p.R623Q 0.33 tolerated_low_confidence(0.42) benign(0.005) TCGA-Z2-A8RT-06 17 63223528 63223528 A T RGS9 3'UTR 0.52 TCGA-Z2-A8RT-06 17 64881255 64881255 C T CACNG5 Silent p.S242S 0.36 TCGA-Z2-A8RT-06 17 651098 651098 G T GEMIN4 Missense_Mutation p.P62H 0.29 tolerated(0.28) benign(0.094) TCGA-Z2-A8RT-06 17 6554934 6554934 C T MED31 5'UTR 0.26 TCGA-Z2-A8RT-06 17 65941746 65941746 C T BPTF Missense_Mutation p.H2308Y 0.34 possibly_damaging(0.491) TCGA-Z2-A8RT-06 17 66880506 66880506 C T ABCA8 Missense_Mutation p.R1154Q 0.40 tolerated(0.63) benign(0.001) TCGA-Z2-A8RT-06 17 67014582 67014582 C T ABCA9 Silent p.L913L 0.39 TCGA-Z2-A8RT-06 17 67210909 67210909 G A ABCA10 Silent p.F314F 0.45 TCGA-Z2-A8RT-06 17 6913789 6913802 TGACATTTCTATCT - ALOX12 3'UTR 0.39 TCGA-Z2-A8RT-06 17 71166522 71166522 A C SSTR2 Missense_Mutation p.E355A 0.36 tolerated(0.66) benign(0.016) TCGA-Z2-A8RT-06 17 71334848 71334848 G A SDK2 Missense_Mutation p.R2133W 0.48 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 72301447 72301447 C T DNAI2 Silent p.T359T 0.35 TCGA-Z2-A8RT-06 17 72301450 72301450 C T DNAI2 Silent p.F360F 0.48 TCGA-Z2-A8RT-06 17 72341016 72341016 G A KIF19 Silent p.R233R 0.35 TCGA-Z2-A8RT-06 17 72350309 72350309 G A KIF19 Missense_Mutation p.E773K 0.29 deleterious(0) possibly_damaging(0.611) TCGA-Z2-A8RT-06 17 72353300 72353300 G A BTBD17 Silent p.F311F 0.50 TCGA-Z2-A8RT-06 17 7251537 7251537 C T ACAP1 Missense_Mutation p.S502F 0.38 tolerated(0.06) possibly_damaging(0.583) TCGA-Z2-A8RT-06 17 72519039 72519039 C G CD300LB Missense_Mutation p.R185S 0.35 tolerated(0.21) benign(0.084) TCGA-Z2-A8RT-06 17 72522130 72522130 C T CD300LB Missense_Mutation p.E80K 0.43 tolerated(0.4) benign(0.103) TCGA-Z2-A8RT-06 17 72537619 72537619 G A CD300C 3'UTR 0.23 TCGA-Z2-A8RT-06 17 72845942 72845942 G A GRIN2C Missense_Mutation p.T541I 0.50 tolerated(0.15) possibly_damaging(0.79) TCGA-Z2-A8RT-06 17 72916103 72916103 G A USH1G Silent p.F276F 0.35 TCGA-Z2-A8RT-06 17 72954778 72954778 C T HID1 Silent p.R410R 0.25 TCGA-Z2-A8RT-06 17 7318294 7318294 C T NLGN2 Silent p.I288I 0.40 TCGA-Z2-A8RT-06 17 73282758 73282758 G A SLC25A19 Missense_Mutation p.R30W 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 7328970 7328970 G A C17orf74 5'UTR 0.37 TCGA-Z2-A8RT-06 17 7330587 7330587 C T C17orf74 Missense_Mutation p.S426F 0.47 deleterious(0.04) probably_damaging(0.919) TCGA-Z2-A8RT-06 17 7340140 7340140 T G TMEM102 Missense_Mutation p.L281R 0.34 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 17 73492849 73492849 C T KIAA0195 Silent p.L1094L 0.36 TCGA-Z2-A8RT-06 17 73501937 73501937 G A CASKIN2 Missense_Mutation p.S267F 0.48 deleterious(0) probably_damaging(0.974) TCGA-Z2-A8RT-06 17 73554300 73554300 C T LLGL2 Missense_Mutation p.H80Y 0.43 tolerated(0.28) benign(0.005) TCGA-Z2-A8RT-06 17 73560542 73560542 C T LLGL2 Silent p.S330S 0.29 TCGA-Z2-A8RT-06 17 73729664 73729664 G A ITGB4 Silent p.G516G 0.33 TCGA-Z2-A8RT-06 17 73738740 73738740 G A ITGB4 Missense_Mutation p.D954N 0.31 deleterious(0.03) benign(0.053) TCGA-Z2-A8RT-06 17 73774983 73774983 G A H3F3B Missense_Mutation p.R64W 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.829) TCGA-Z2-A8RT-06 17 73836347 73836347 G A UNC13D Nonsense_Mutation p.R273* 0.48 TCGA-Z2-A8RT-06 17 73836348 73836348 G A UNC13D Silent p.D272D 0.49 TCGA-Z2-A8RT-06 17 74133923 74133923 C T FOXJ1 Silent p.G259G 0.32 TCGA-Z2-A8RT-06 17 74278107 74278107 G A QRICH2 Silent p.T1201T 0.54 TCGA-Z2-A8RT-06 17 74303571 74303571 G A QRICH2 Missense_Mutation p.A4V 0.32 deleterious_low_confidence(0.02) benign(0.015) TCGA-Z2-A8RT-06 17 74307685 74307685 G A PRPSAP1 Missense_Mutation p.R366W 0.45 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 74387477 74387477 G A UBE2O Silent p.I1142I 0.41 TCGA-Z2-A8RT-06 17 74392231 74392231 G A UBE2O Silent p.F929F 0.34 TCGA-Z2-A8RT-06 17 74621961 74621961 C T ST6GALNAC1 Silent p.R515R 0.40 TCGA-Z2-A8RT-06 17 7484344 7484344 C T CD68 Silent p.L297L 0.34 TCGA-Z2-A8RT-06 17 7484345 7484345 C T CD68 Nonsense_Mutation p.Q298* 0.32 TCGA-Z2-A8RT-06 17 75212735 75212735 C T SEC14L1 3'UTR 0.37 TCGA-Z2-A8RT-06 17 7557429 7557429 G A ATP1B2 Missense_Mutation p.E136K 0.40 tolerated(0.69) benign(0.047) TCGA-Z2-A8RT-06 17 7578204 7578204 A C TP53 Missense_Mutation p.S215R 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.31 TCGA-Z2-A8RT-06 17 7604850 7604850 C T WRAP53 Missense_Mutation p.R269C 0.27 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 17 76212833 76212833 C T AC087645.1 Missense_Mutation p.S255N 0.36 deleterious_low_confidence(0) benign(0.393) TCGA-Z2-A8RT-06 17 76421653 76421653 C T DNAH17 Splice_Site p.X4329_splice 0.40 TCGA-Z2-A8RT-06 17 76449445 76449445 C T DNAH17 Silent p.R3489R 0.35 TCGA-Z2-A8RT-06 17 7646526 7646526 C T DNAH2 Intron 0.33 TCGA-Z2-A8RT-06 17 76496440 76496440 C T DNAH17 Missense_Mutation p.A1849T 0.57 possibly_damaging(0.606) TCGA-Z2-A8RT-06 17 76496597 76496597 T A DNAH17-AS1 3'UTR 0.32 TCGA-Z2-A8RT-06 17 76672189 76672189 G A CYTH1 Missense_Mutation p.S394F 0.21 deleterious(0.01) benign(0.008) TCGA-Z2-A8RT-06 17 76831522 76831522 G A USP36 Silent p.F105F 0.26 TCGA-Z2-A8RT-06 17 76870080 76870080 G A TIMP2 Intron 0.38 TCGA-Z2-A8RT-06 17 77044201 77044201 C T C1QTNF1 3'UTR 0.33 TCGA-Z2-A8RT-06 17 7721733 7721733 G A DNAH2 Silent p.E3497E 0.36 TCGA-Z2-A8RT-06 17 77983975 77983975 G A TBC1D16 Silent p.L255L 0.35 TCGA-Z2-A8RT-06 17 78021185 78021185 C T CCDC40 Silent p.F220F 0.62 TCGA-Z2-A8RT-06 17 78022434 78022434 G A CCDC40 Silent p.V243V 0.40 TCGA-Z2-A8RT-06 17 78022435 78022435 T A CCDC40 Missense_Mutation p.F244I 0.40 deleterious(0.01) benign(0.393) TCGA-Z2-A8RT-06 17 79503619 79503619 G A FSCN2 Silent p.G383G 0.32 TCGA-Z2-A8RT-06 17 79514456 79514456 G A C17orf70 Missense_Mutation p.S551F 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-Z2-A8RT-06 17 8046853 8046853 G A PER1 Missense_Mutation p.P935S 0.38 deleterious(0.02) benign(0.018) TCGA-Z2-A8RT-06 17 8141428 8141428 G A CTC1 Missense_Mutation p.P190S 0.34 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 17 8215455 8215455 C T ARHGEF15 Missense_Mutation p.S33F 0.46 deleterious_low_confidence(0) benign(0.001) TCGA-Z2-A8RT-06 17 8222159 8222159 C T ARHGEF15 Missense_Mutation p.S655L 0.37 tolerated(0.2) benign(0.077) TCGA-Z2-A8RT-06 17 8272745 8272745 T A KRBA2 Missense_Mutation p.N396Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 17 8526287 8526287 A G MYH10 Missense_Mutation p.L93S 0.46 probably_damaging(0.998) TCGA-Z2-A8RT-06 17 8660690 8660690 G A SPDYE4 Missense_Mutation p.P77L 0.46 deleterious(0.04) possibly_damaging(0.713) TCGA-Z2-A8RT-06 17 9515626 9515626 G A WDR16 Silent p.K285K 0.43 TCGA-Z2-A8RT-06 18 13884819 13884819 G A MC2R Silent p.A233A 0.71 TCGA-Z2-A8RT-06 18 19995520 19995520 G A CTAGE1 3'UTR 0.46 TCGA-Z2-A8RT-06 18 19995521 19995521 G A CTAGE1 3'UTR 0.44 TCGA-Z2-A8RT-06 18 19995835 19995835 G A CTAGE1 Missense_Mutation p.S647L 0.35 deleterious(0.02) benign(0.253) TCGA-Z2-A8RT-06 18 19997311 19997311 G A CTAGE1 Missense_Mutation p.S155L 0.33 tolerated(0.08) probably_damaging(0.924) TCGA-Z2-A8RT-06 18 21481191 21481191 C T LAMA3 Silent p.L2035L 0.31 TCGA-Z2-A8RT-06 18 22057010 22057010 C T HRH4 Silent p.V219V 0.45 TCGA-Z2-A8RT-06 18 22807582 22807582 G A ZNF521 Silent p.S100S 0.47 TCGA-Z2-A8RT-06 18 23854931 23854931 C T TAF4B Missense_Mutation p.L266F 0.39 deleterious(0.03) possibly_damaging(0.85) TCGA-Z2-A8RT-06 18 25543330 25543330 G A CDH2 Silent p.F835F 0.48 TCGA-Z2-A8RT-06 18 2575040 2575040 A G NDC80 Missense_Mutation p.R52G 0.72 deleterious(0.03) probably_damaging(0.994) TCGA-Z2-A8RT-06 18 28574269 28574269 C T DSC3 Missense_Mutation p.E855K 0.46 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 18 28576878 28576878 G A DSC3 Missense_Mutation p.S791F 0.36 deleterious(0) possibly_damaging(0.829) TCGA-Z2-A8RT-06 18 28710403 28710403 G A DSC1 3'UTR 0.43 TCGA-Z2-A8RT-06 18 28737418 28737418 C T DSC1 Silent p.R89R 0.41 TCGA-Z2-A8RT-06 18 28983517 28983517 C T DSG4 Missense_Mutation p.S519F 0.31 deleterious(0.04) possibly_damaging(0.474) TCGA-Z2-A8RT-06 18 29052358 29052358 G A DSG3 Missense_Mutation p.G670E 0.45 deleterious(0.05) possibly_damaging(0.798) TCGA-Z2-A8RT-06 18 29055636 29055636 G A DSG3 Missense_Mutation p.D805N 0.19 deleterious(0.03) benign(0.038) TCGA-Z2-A8RT-06 18 29111085 29111085 G A DSG2 Missense_Mutation p.E384K 0.38 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 18 29171878 29171878 C T TTR Missense_Mutation p.R5C 0.28 tolerated_low_confidence(0.07) benign(0.003) TCGA-Z2-A8RT-06 18 29787247 29787247 G A MEP1B Missense_Mutation p.D194N 0.38 tolerated(0.39) benign(0.001) TCGA-Z2-A8RT-06 18 29847999 29847999 G A GAREM Silent p.F822F 0.36 TCGA-Z2-A8RT-06 18 30091832 30091832 A T WBP11P1 RNA 0.31 TCGA-Z2-A8RT-06 18 30349866 30349866 G A KLHL14 Missense_Mutation p.P230L 0.36 tolerated(1) probably_damaging(0.95) TCGA-Z2-A8RT-06 18 31318880 31318880 G A ASXL3 Missense_Mutation p.M504I 0.38 benign(0.001) TCGA-Z2-A8RT-06 18 31324893 31324893 C T ASXL3 Missense_Mutation p.P1694L 0.26 benign(0.004) TCGA-Z2-A8RT-06 18 32438354 32438354 G A DTNA Silent p.R459R 0.33 TCGA-Z2-A8RT-06 18 33848543 33848543 C T MOCOS Silent p.S854S 0.40 TCGA-Z2-A8RT-06 18 3814256 3814256 C T DLGAP1 Nonsense_Mutation p.W325* 0.69 TCGA-Z2-A8RT-06 18 40850418 40850418 C T SYT4 Missense_Mutation p.G389E 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 18 40850420 40850420 G A SYT4 Silent p.I388I 0.43 TCGA-Z2-A8RT-06 18 42449235 42449235 G A SETBP1 Missense_Mutation p.G176E 0.35 tolerated(0.1) benign(0.44) TCGA-Z2-A8RT-06 18 42532240 42532240 G A SETBP1 Missense_Mutation p.E979K 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 18 42533166 42533166 G A SETBP1 Silent p.S1287S 0.38 TCGA-Z2-A8RT-06 18 42643200 42643200 C T SETBP1 Missense_Mutation p.S1443L 0.34 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 18 43204679 43204679 G A SLC14A2 Missense_Mutation p.R17K 0.35 tolerated_low_confidence(0.11) benign(0.004) TCGA-Z2-A8RT-06 18 43262374 43262374 C T SLC14A2 Missense_Mutation p.P885S 0.33 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 18 43529513 43529513 G A EPG5 Silent p.F478F 0.40 TCGA-Z2-A8RT-06 18 43620001 43620001 G A PSTPIP2 Missense_Mutation p.L16F 0.35 tolerated(0.05) possibly_damaging(0.908) TCGA-Z2-A8RT-06 18 44260164 44260164 G A ST8SIA5 Silent p.F324F 0.41 TCGA-Z2-A8RT-06 18 44555032 44555032 C T TCEB3C Silent p.R394R 0.04 TCGA-Z2-A8RT-06 18 44559634 44559634 C T TCEB3B Missense_Mutation p.E668K 0.45 deleterious(0.01) benign(0.058) TCGA-Z2-A8RT-06 18 44559889 44559889 C T TCEB3B Missense_Mutation p.E583K 0.36 deleterious(0.05) benign(0.404) TCGA-Z2-A8RT-06 18 45566738 45566738 G A ZBTB7C Silent p.S247S 0.30 TCGA-Z2-A8RT-06 18 47113213 47113213 G A LIPG Missense_Mutation p.E492K 0.38 tolerated(0.47) benign(0.004) TCGA-Z2-A8RT-06 18 47431162 47431162 C T MYO5B Silent p.V817V 0.41 TCGA-Z2-A8RT-06 18 48190505 48190505 G A MAPK4 Missense_Mutation p.M59I 0.35 tolerated(0.09) benign(0.005) TCGA-Z2-A8RT-06 18 50705415 50705415 G A DCC Missense_Mutation p.R501Q 0.46 tolerated(0.09) probably_damaging(0.962) TCGA-Z2-A8RT-06 18 50848428 50848428 G A DCC Missense_Mutation p.G689R 0.43 deleterious(0.04) probably_damaging(0.995) TCGA-Z2-A8RT-06 18 50985648 50985648 G A DCC Missense_Mutation p.D1147N 0.43 tolerated(0.06) possibly_damaging(0.835) TCGA-Z2-A8RT-06 18 51820726 51820726 C T POLI Silent p.F704F 0.21 TCGA-Z2-A8RT-06 18 52937063 52937063 C T TCF4 Missense_Mutation p.M409I 0.25 deleterious(0.03) benign(0.074) TCGA-Z2-A8RT-06 18 56118306 56118306 C T MIR122 RNA 0.33 TCGA-Z2-A8RT-06 18 56586400 56586400 C T ZNF532 Missense_Mutation p.S294L 0.47 deleterious(0.01) benign(0.069) TCGA-Z2-A8RT-06 18 59483472 59483472 G A RNF152 Silent p.V75V 0.23 TCGA-Z2-A8RT-06 18 60241464 60241464 C T ZCCHC2 Missense_Mutation p.S717F 0.41 deleterious(0.01) possibly_damaging(0.701) TCGA-Z2-A8RT-06 18 60587318 60587318 C T PHLPP1 Silent p.L977L 0.31 TCGA-Z2-A8RT-06 18 60999068 60999068 G A KDSR Missense_Mutation p.R316C 0.42 deleterious(0.01) probably_damaging(0.932) TCGA-Z2-A8RT-06 18 61255889 61255889 C T SERPINB13 5'UTR 0.28 TCGA-Z2-A8RT-06 18 61309047 61309047 C T SERPINB4 Missense_Mutation p.E100K 0.41 tolerated(0.09) benign(0.412) TCGA-Z2-A8RT-06 18 61310436 61310436 G A SERPINB4 Nonsense_Mutation p.Q61* 0.37 TCGA-Z2-A8RT-06 18 61322930 61322930 G A SERPINB3 Silent p.T378T 0.44 TCGA-Z2-A8RT-06 18 61328036 61328036 G A SERPINB3 Missense_Mutation p.H74Y 0.41 deleterious(0.02) possibly_damaging(0.633) TCGA-Z2-A8RT-06 18 61377572 61377572 G A SERPINB11 Missense_Mutation p.E49K 0.46 tolerated(0.1) benign(0.002) TCGA-Z2-A8RT-06 18 61387247 61387247 G A SERPINB11 Missense_Mutation p.G159E 0.30 tolerated(0.21) probably_damaging(0.998) TCGA-Z2-A8RT-06 18 61569770 61569770 G A SERPINB2 Missense_Mutation p.E271K 0.36 deleterious(0.04) benign(0.038) TCGA-Z2-A8RT-06 18 64172226 64172226 A T CDH19 Silent p.P714P 0.43 TCGA-Z2-A8RT-06 18 64172492 64172492 G T CDH19 Missense_Mutation p.L626I 0.31 tolerated(0.17) possibly_damaging(0.899) TCGA-Z2-A8RT-06 18 64239436 64239436 G A CDH19 Silent p.N2N 0.34 TCGA-Z2-A8RT-06 18 65178446 65178446 G A DSEL Missense_Mutation p.P1144S 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-Z2-A8RT-06 18 6859865 6859865 G A ARHGAP28 Missense_Mutation p.G73E 0.66 tolerated(0.2) benign(0.004) TCGA-Z2-A8RT-06 18 7011383 7011383 G A LAMA1 Silent p.F1201F 0.88 TCGA-Z2-A8RT-06 18 70526090 70526090 C T NETO1 Missense_Mutation p.G147E 0.45 deleterious(0.01) probably_damaging(0.988) TCGA-Z2-A8RT-06 18 71797833 71797833 A T FBXO15 Missense_Mutation p.F131L 0.36 tolerated(0.34) benign(0) TCGA-Z2-A8RT-06 18 74154881 74154881 G A ZNF516 Missense_Mutation p.P44S 0.26 deleterious(0) possibly_damaging(0.798) TCGA-Z2-A8RT-06 18 74980633 74980633 C T GALR1 Silent p.F275F 0.49 TCGA-Z2-A8RT-06 18 76752609 76752609 G A SALL3 Silent p.L206L 0.29 TCGA-Z2-A8RT-06 18 76753113 76753113 C T SALL3 Silent p.P374P 0.39 TCGA-Z2-A8RT-06 18 77918329 77918329 G A PARD6G Silent p.V152V 0.46 TCGA-Z2-A8RT-06 18 9258116 9258116 T G ANKRD12 Missense_Mutation p.H1617Q 0.55 tolerated_low_confidence(0.21) benign(0.002) TCGA-Z2-A8RT-06 18 9887407 9887407 G A TXNDC2 Missense_Mutation p.E311K 0.72 tolerated(0.58) unknown(0) TCGA-Z2-A8RT-06 19 10071216 10071216 C T COL5A3 Silent p.T1703T 0.42 TCGA-Z2-A8RT-06 19 10112244 10112244 G A COL5A3 Missense_Mutation p.R356W 0.27 unknown(0) TCGA-Z2-A8RT-06 19 10112481 10112481 G A COL5A3 Missense_Mutation p.S309F 0.42 unknown(0) TCGA-Z2-A8RT-06 19 10163013 10163013 C T C3P1 RNA 0.22 TCGA-Z2-A8RT-06 19 10476451 10476451 G A TYK2 Silent p.S251S 0.40 TCGA-Z2-A8RT-06 19 10476452 10476452 G A TYK2 Missense_Mutation p.S251F 0.42 deleterious(0) possibly_damaging(0.862) TCGA-Z2-A8RT-06 19 10578418 10578418 G A PDE4A 3'UTR 0.40 TCGA-Z2-A8RT-06 19 10793300 10793300 C T ILF3 Missense_Mutation p.P490S 0.31 tolerated(0.15) benign(0.084) TCGA-Z2-A8RT-06 19 10794412 10794412 G A ILF3 Missense_Mutation p.R655Q 0.40 tolerated(0.62) unknown(0) TCGA-Z2-A8RT-06 19 11040212 11040212 C T C19orf52 Missense_Mutation p.S206F 0.40 deleterious(0) probably_damaging(0.955) TCGA-Z2-A8RT-06 19 11132633 11132633 C T SMARCA4 Missense_Mutation p.T950I 0.34 probably_damaging(0.983) TCGA-Z2-A8RT-06 19 11327944 11327944 G A DOCK6 Missense_Mutation p.P1225L 0.35 tolerated(0.53) benign(0.001) TCGA-Z2-A8RT-06 19 11658624 11658624 G A CNN1 Missense_Mutation p.G135R 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-Z2-A8RT-06 19 11943474 11943474 C T ZNF440 Missense_Mutation p.P495S 0.38 tolerated(0.56) benign(0.001) TCGA-Z2-A8RT-06 19 12429794 12429794 G A ZNF563 Missense_Mutation p.P349S 0.35 tolerated(0.47) benign(0.034) TCGA-Z2-A8RT-06 19 12460524 12460524 A G ZNF442 Silent p.D625D 0.38 TCGA-Z2-A8RT-06 19 12494472 12494472 C T CTD-3105H18.14 Silent p.V11V 0.29 TCGA-Z2-A8RT-06 19 13051368 13051368 C T CALR Missense_Mutation p.P239L 0.43 deleterious(0.01) possibly_damaging(0.676) TCGA-Z2-A8RT-06 19 13988295 13988295 C T NANOS3 Missense_Mutation p.S78F 0.29 deleterious(0) probably_damaging(0.916) TCGA-Z2-A8RT-06 19 14694173 14694173 C T CLEC17A Silent p.T16T 0.41 TCGA-Z2-A8RT-06 19 15272515 15272515 G A NOTCH3 Missense_Mutation p.P1975L 0.12 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 19 15284990 15284990 G A NOTCH3 Missense_Mutation p.S1542L 0.42 deleterious(0.01) possibly_damaging(0.558) TCGA-Z2-A8RT-06 19 15839061 15839061 G A OR10H2 Missense_Mutation p.E70K 0.37 deleterious(0.01) benign(0.268) TCGA-Z2-A8RT-06 19 15905654 15905654 C T OR10H5 Missense_Mutation p.P266S 0.39 tolerated(0.43) benign(0.084) TCGA-Z2-A8RT-06 19 16000503 16000503 C T CYP4F2 Silent p.E216E 0.37 TCGA-Z2-A8RT-06 19 16025182 16025182 G A CYP4F11 Missense_Mutation p.R444C 0.42 deleterious(0.01) possibly_damaging(0.874) TCGA-Z2-A8RT-06 19 16338453 16338453 C T AP1M1 Silent p.I268I 0.40 TCGA-Z2-A8RT-06 19 16506164 16506164 G A EPS15L1 Missense_Mutation p.P636S 0.38 deleterious(0) possibly_damaging(0.697) TCGA-Z2-A8RT-06 19 16918703 16918703 C T NWD1 Missense_Mutation p.P1348L 0.41 tolerated(0.11) possibly_damaging(0.664) TCGA-Z2-A8RT-06 19 17169356 17169356 G A HAUS8 Intron 0.51 TCGA-Z2-A8RT-06 19 17397299 17397299 C T ANKLE1 Missense_Mutation p.L596F 0.35 deleterious(0.02) probably_damaging(0.961) TCGA-Z2-A8RT-06 19 17571517 17571517 G A NXNL1 Silent p.L54L 0.39 TCGA-Z2-A8RT-06 19 17750670 17750670 C T UNC13A Silent p.R945R 0.30 TCGA-Z2-A8RT-06 19 17837189 17837189 C T MAP1S Silent p.P332P 0.38 TCGA-Z2-A8RT-06 19 1784874 1784874 A T ATP8B3 Missense_Mutation p.F1202I 0.21 tolerated(0.29) benign(0.001) TCGA-Z2-A8RT-06 19 1789625 1789625 G A ATP8B3 Silent p.F860F 0.55 TCGA-Z2-A8RT-06 19 17922713 17922713 G A B3GNT3 Missense_Mutation p.G301S 0.41 deleterious(0.03) probably_damaging(1) TCGA-Z2-A8RT-06 19 18170727 18170727 C T IL12RB1 Missense_Mutation p.D654N 0.45 tolerated(0.06) benign(0.335) TCGA-Z2-A8RT-06 19 1828352 1828352 G A REXO1 Missense_Mutation p.P146S 0.48 tolerated(0.5) benign(0.014) TCGA-Z2-A8RT-06 19 18368733 18368733 G A KIAA1683 Nonsense_Mutation p.Q1121* 0.31 TCGA-Z2-A8RT-06 19 19307817 19307817 G A RFXANK Missense_Mutation p.R78Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 19 19625534 19625534 C T TSSK6 Missense_Mutation p.E235K 0.40 tolerated(0.86) benign(0.001) TCGA-Z2-A8RT-06 19 19656488 19656488 C T CILP2 Missense_Mutation p.A1045V 0.54 tolerated(0.13) benign(0.008) TCGA-Z2-A8RT-06 19 19753369 19753369 T A GMIP Missense_Mutation p.N27Y 0.39 deleterious(0.03) probably_damaging(0.984) TCGA-Z2-A8RT-06 19 20117876 20117876 G A ZNF682 Silent p.F145F 0.40 TCGA-Z2-A8RT-06 19 20229193 20229193 G A ZNF90 Missense_Mutation p.R277K 0.29 tolerated(0.37) benign(0.045) TCGA-Z2-A8RT-06 19 20295162 20295162 C T ZNF486 Intron 0.32 TCGA-Z2-A8RT-06 19 20807842 20807842 C T ZNF626 Missense_Mutation p.E281K 0.42 deleterious(0.01) benign(0.315) TCGA-Z2-A8RT-06 19 2114221 2114221 G A AP3D1 Missense_Mutation p.P835L 0.27 deleterious(0.04) benign(0.025) TCGA-Z2-A8RT-06 19 21240327 21240327 G A ZNF430 Missense_Mutation p.E405K 0.41 deleterious(0.04) benign(0.428) TCGA-Z2-A8RT-06 19 21366385 21366385 C T ZNF431 Missense_Mutation p.P427S 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-Z2-A8RT-06 19 21606786 21606786 T A ZNF493 Missense_Mutation p.F442Y 0.38 deleterious(0.01) benign(0.144) TCGA-Z2-A8RT-06 19 22154119 22154119 G A ZNF208 Silent p.I1239I 0.37 TCGA-Z2-A8RT-06 19 22154265 22154265 G A ZNF208 Missense_Mutation p.H1191Y 0.32 deleterious(0.02) possibly_damaging(0.47) TCGA-Z2-A8RT-06 19 2225413 2225413 C T DOT1L Missense_Mutation p.S1208F 0.46 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-Z2-A8RT-06 19 22362861 22362861 C T ZNF676 Missense_Mutation p.R553K 0.36 tolerated(0.46) benign(0.002) TCGA-Z2-A8RT-06 19 22379605 22379605 G A ZNF676 5'UTR 0.41 TCGA-Z2-A8RT-06 19 22575099 22575099 T C ZNF98 Missense_Mutation p.K313R 0.52 tolerated(0.05) probably_damaging(0.995) TCGA-Z2-A8RT-06 19 22575100 22575100 T A ZNF98 Nonsense_Mutation p.K313* 0.56 TCGA-Z2-A8RT-06 19 22585648 22585648 C T ZNF98 Missense_Mutation p.E66K 0.36 tolerated(0.07) possibly_damaging(0.899) TCGA-Z2-A8RT-06 19 22586240 22586240 C T ZNF98 Silent p.Q35Q 0.39 TCGA-Z2-A8RT-06 19 22940599 22940599 G A ZNF99 Silent p.P704P 0.37 TCGA-Z2-A8RT-06 19 23159336 23159336 G A ZNF728 Missense_Mutation p.S268F 0.25 tolerated(0.27) benign(0.008) TCGA-Z2-A8RT-06 19 23927908 23927908 C T ZNF681 Missense_Mutation p.M148I 0.29 tolerated(0.13) benign(0.107) TCGA-Z2-A8RT-06 19 23937682 23937682 C T ZNF681 Missense_Mutation p.E57K 0.41 tolerated(0.08) possibly_damaging(0.636) TCGA-Z2-A8RT-06 19 23991611 23991611 C T RPSAP58 5'UTR 0.35 TCGA-Z2-A8RT-06 19 2413890 2413890 G A TMPRSS9 Missense_Mutation p.A449T 0.37 tolerated(0.52) benign(0.005) TCGA-Z2-A8RT-06 19 2416773 2416773 G A TMPRSS9 Missense_Mutation p.M627I 0.36 tolerated(0.4) benign(0.023) TCGA-Z2-A8RT-06 19 2717673 2717673 G A DIRAS1 Silent p.Y44Y 0.45 TCGA-Z2-A8RT-06 19 2732800 2732800 G A SLC39A3 Silent p.F298F 0.30 TCGA-Z2-A8RT-06 19 2989724 2989724 C T TLE6 Silent p.F395F 0.30 TCGA-Z2-A8RT-06 19 30103067 30103067 C T POP4 Missense_Mutation p.H136Y 0.37 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 19 31039262 31039262 G A ZNF536 Silent p.V912V 0.33 TCGA-Z2-A8RT-06 19 3151813 3151813 C T GNA15 Silent p.S198S 0.54 TCGA-Z2-A8RT-06 19 3180006 3180006 G A S1PR4 3'UTR 0.31 TCGA-Z2-A8RT-06 19 32930687 32930687 G C DPY19L3 Silent p.L242L 0.33 TCGA-Z2-A8RT-06 19 33089060 33089060 G A ANKRD27 Silent p.S1048S 0.34 TCGA-Z2-A8RT-06 19 33321568 33321568 C T SLC7A9 Silent p.Q474Q 0.38 TCGA-Z2-A8RT-06 19 33623261 33623261 C T WDR88 Silent p.A62A 0.40 TCGA-Z2-A8RT-06 19 33703242 33703242 C T SLC7A10 Nonsense_Mutation p.W248* 0.46 TCGA-Z2-A8RT-06 19 34791651 34791651 C T KIAA0355 Silent p.C91C 0.37 TCGA-Z2-A8RT-06 19 35758810 35758810 G A LSR 3'UTR 0.43 TCGA-Z2-A8RT-06 19 35761365 35761365 C T USF2 Missense_Mutation p.P149S 0.52 tolerated(0.11) benign(0.11) TCGA-Z2-A8RT-06 19 36210386 36210386 C T KMT2B Missense_Mutation p.H127Y 0.36 unknown(0) TCGA-Z2-A8RT-06 19 36211972 36211972 C T KMT2B Nonsense_Mutation p.Q575* 0.42 TCGA-Z2-A8RT-06 19 36218862 36218862 C T KMT2B Silent p.G1491G 0.50 TCGA-Z2-A8RT-06 19 36218863 36218863 C T KMT2B Nonsense_Mutation p.Q1492* 0.50 TCGA-Z2-A8RT-06 19 36224681 36224681 C T KMT2B Missense_Mutation p.S2356F 0.23 possibly_damaging(0.507) TCGA-Z2-A8RT-06 19 36271193 36271193 C T ARHGAP33 Silent p.I194I 0.34 TCGA-Z2-A8RT-06 19 36297490 36297490 G A PRODH2 Silent p.F357F 0.37 TCGA-Z2-A8RT-06 19 37006159 37006159 G A ZNF260 5'UTR 0.31 TCGA-Z2-A8RT-06 19 37488306 37488306 C T ZNF568 Silent p.A507A 0.14 TCGA-Z2-A8RT-06 19 3778313 3778313 C T MATK Silent p.E465E 0.46 TCGA-Z2-A8RT-06 19 37975258 37975258 C T ZNF570 Missense_Mutation p.P245L 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-A8RT-06 19 38074972 38074972 G A ZNF571 Silent p.A12A 0.39 TCGA-Z2-A8RT-06 19 38161099 38161099 C T ZNF781 5'UTR 0.36 TCGA-Z2-A8RT-06 19 38188146 38188146 C T ZNF607 3'UTR 0.33 TCGA-Z2-A8RT-06 19 38188300 38188300 C T ZNF607 3'UTR 0.35 TCGA-Z2-A8RT-06 19 38876961 38876961 C T GGN Missense_Mutation p.G314E 0.32 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 19 38954390 38954390 C T RYR1 Missense_Mutation p.R896W 0.41 probably_damaging(1) TCGA-Z2-A8RT-06 19 38954415 38954415 C T RYR1 Missense_Mutation p.P904L 0.36 probably_damaging(0.929) TCGA-Z2-A8RT-06 19 38959726 38959726 C T RYR1 Missense_Mutation p.L1168F 0.38 probably_damaging(0.995) TCGA-Z2-A8RT-06 19 39070710 39070710 C T RYR1 Missense_Mutation p.A4818V 0.40 unknown(0) TCGA-Z2-A8RT-06 19 3917750 3917750 G A ATCAY Missense_Mutation p.E326K 0.29 deleterious(0.04) benign(0.4) TCGA-Z2-A8RT-06 19 39360614 39360614 G A RINL Silent p.V437V 0.50 TCGA-Z2-A8RT-06 19 39914065 39914065 C T PLEKHG2 Silent p.L791L 0.35 TCGA-Z2-A8RT-06 19 40196623 40196623 G A LGALS14 Missense_Mutation p.G26R 0.37 deleterious(0.01) benign(0.116) TCGA-Z2-A8RT-06 19 40316662 40316662 G A DYRK1B Missense_Mutation p.A528V 0.36 tolerated_low_confidence(0.11) benign(0.001) TCGA-Z2-A8RT-06 19 40408666 40408666 C T FCGBP Silent p.G1391G 0.39 TCGA-Z2-A8RT-06 19 40504249 40504249 C T ZNF546 Missense_Mutation p.P6S 0.36 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 19 41096167 41096167 C T SHKBP1 Missense_Mutation p.S536F 0.50 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 19 41096727 41096727 C T SHKBP1 Silent p.L620L 0.34 TCGA-Z2-A8RT-06 19 41388125 41388125 G A CYP2A7 5'UTR 0.41 TCGA-Z2-A8RT-06 19 41622176 41622176 G A CYP2F1 Missense_Mutation p.G28E 0.34 tolerated(0.07) benign(0.009) TCGA-Z2-A8RT-06 19 41704440 41704440 C T CYP2S1 Silent p.L189L 0.35 TCGA-Z2-A8RT-06 19 41704731 41704731 A C CYP2S1 Missense_Mutation p.N258H 0.35 deleterious(0) possibly_damaging(0.764) TCGA-Z2-A8RT-06 19 42181400 42181400 G A CEACAM7 Silent p.L246L 0.31 TCGA-Z2-A8RT-06 19 42265212 42265212 G T CEACAM6 Missense_Mutation p.K160N 0.41 tolerated(0.12) benign(0.39) TCGA-Z2-A8RT-06 19 42266032 42266032 C T CEACAM6 Missense_Mutation p.P287S 0.27 deleterious(0.04) benign(0.095) TCGA-Z2-A8RT-06 19 42472951 42472951 G A ATP1A3 Silent p.F948F 0.39 TCGA-Z2-A8RT-06 19 42474386 42474386 C T ATP1A3 Silent p.T844T 0.38 TCGA-Z2-A8RT-06 19 42703566 42703566 G A DEDD2 3'UTR 0.35 TCGA-Z2-A8RT-06 19 42880157 42880157 C T MEGF8 Missense_Mutation p.R2523C 0.34 deleterious(0) possibly_damaging(0.758) TCGA-Z2-A8RT-06 19 43093027 43093027 G A CEACAM8 Silent p.I289I 0.43 TCGA-Z2-A8RT-06 19 43093808 43093808 T G CEACAM8 Missense_Mutation p.E168D 0.39 tolerated(0.4) benign(0.173) TCGA-Z2-A8RT-06 19 4311970 4311970 G A FSD1 Missense_Mutation p.E208K 0.52 tolerated(0.19) benign(0.443) TCGA-Z2-A8RT-06 19 43242926 43242926 C T PSG3 Missense_Mutation p.R127Q 0.39 tolerated(0.19) benign(0.082) TCGA-Z2-A8RT-06 19 43243009 43243009 T A PSG3 Missense_Mutation p.E99D 0.37 deleterious(0) possibly_damaging(0.854) TCGA-Z2-A8RT-06 19 43375968 43375968 C T PSG1 Silent p.R220R 0.38 TCGA-Z2-A8RT-06 19 43433795 43433795 C T PSG7 Missense_Mutation p.D170N 0.36 tolerated(0.06) benign(0.031) TCGA-Z2-A8RT-06 19 43690519 43690519 G A PSG5 Silent p.I13I 0.37 TCGA-Z2-A8RT-06 19 43772168 43772168 G A PSG9 Silent p.F66F 0.40 TCGA-Z2-A8RT-06 19 43864496 43864496 G A CD177 3'UTR 0.54 TCGA-Z2-A8RT-06 19 44377618 44377618 C T ZNF404 Missense_Mutation p.E250K 0.50 tolerated(1) benign(0.147) TCGA-Z2-A8RT-06 19 44513025 44513025 C T ZNF230 Silent p.Y33Y 0.38 TCGA-Z2-A8RT-06 19 44536031 44536031 C T ZNF222 Silent p.S108S 0.35 TCGA-Z2-A8RT-06 19 44610799 44610799 C T ZNF224 Silent p.H162H 0.29 TCGA-Z2-A8RT-06 19 44777365 44777365 G A ZNF233 Silent p.R184R 0.25 TCGA-Z2-A8RT-06 19 44934086 44934086 C T ZNF229 Silent p.E290E 0.46 TCGA-Z2-A8RT-06 19 44934628 44934628 C T ZNF229 Missense_Mutation p.E110K 0.46 tolerated(0.48) probably_damaging(0.968) TCGA-Z2-A8RT-06 19 45016953 45016953 C T CEACAM20 RNA 0.48 TCGA-Z2-A8RT-06 19 45029171 45029171 C T CEACAM20 RNA 0.39 TCGA-Z2-A8RT-06 19 4504617 4504617 C T PLIN4 Missense_Mutation p.E1310K 0.39 deleterious(0.03) possibly_damaging(0.661) TCGA-Z2-A8RT-06 19 45997567 45997567 G A RTN2 Missense_Mutation p.S224L 0.32 deleterious_low_confidence(0) benign(0.242) TCGA-Z2-A8RT-06 19 46094075 46094075 C T GPR4 Silent p.G350G 0.33 TCGA-Z2-A8RT-06 19 46180236 46180236 C T GIPR Silent p.I221I 0.44 TCGA-Z2-A8RT-06 19 46195173 46195173 C T SNRPD2 5'UTR 0.37 TCGA-Z2-A8RT-06 19 46195174 46195174 C T SNRPD2 5'UTR 0.36 TCGA-Z2-A8RT-06 19 46195241 46195241 C T SNRPD2 5'UTR 0.38 TCGA-Z2-A8RT-06 19 46195251 46195251 C T SNRPD2 5'UTR 0.41 TCGA-Z2-A8RT-06 19 46282539 46282539 G A DMPK Nonsense_Mutation p.Q149* 0.37 TCGA-Z2-A8RT-06 19 46299118 46299118 G A RSPH6A 3'UTR 0.43 TCGA-Z2-A8RT-06 19 46314105 46314105 C T RSPH6A Intron 0.37 TCGA-Z2-A8RT-06 19 464017 464017 G A ODF3L2 Missense_Mutation p.P233S 0.21 tolerated(0.48) benign(0.077) TCGA-Z2-A8RT-06 19 4676662 4676662 G T DPP9 Missense_Mutation p.P865T 0.20 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 19 46828879 46828879 G A HIF3A Missense_Mutation p.D475N 0.40 tolerated(0.14) benign(0.004) TCGA-Z2-A8RT-06 19 46997454 46997454 G A PNMAL2 Silent p.L423L 0.47 TCGA-Z2-A8RT-06 19 47763860 47763860 C T CCDC9 Missense_Mutation p.P76S 0.36 tolerated(0.24) benign(0.05) TCGA-Z2-A8RT-06 19 47824082 47824082 G A C5AR1 Missense_Mutation p.V350M 0.41 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 19 48197934 48197934 C T GLTSCR1 Missense_Mutation p.P949L 0.32 possibly_damaging(0.794) TCGA-Z2-A8RT-06 19 48789434 48789434 C T ZNF114 Nonsense_Mutation p.Q185* 0.29 TCGA-Z2-A8RT-06 19 48846628 48846628 G A TMEM143 Silent p.S215S 0.47 TCGA-Z2-A8RT-06 19 48846647 48846647 C A TMEM143 Missense_Mutation p.G209V 0.36 tolerated(0.16) probably_damaging(0.994) TCGA-Z2-A8RT-06 19 48869087 48869087 G A SYNGR4 5'UTR 0.34 TCGA-Z2-A8RT-06 19 48996980 48996980 C T LMTK3 Missense_Mutation p.G1384R 0.50 unknown(0) TCGA-Z2-A8RT-06 19 49100066 49100066 C T SULT2B1 Missense_Mutation p.S239F 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-A8RT-06 19 49110597 49110597 C T SPACA4 Missense_Mutation p.P121L 0.52 tolerated_low_confidence(0.67) unknown(0) TCGA-Z2-A8RT-06 19 49601946 49601946 C T SNRNP70 Silent p.Y126Y 0.36 TCGA-Z2-A8RT-06 19 49657918 49657918 C T HRC Missense_Mutation p.E193K 0.26 tolerated(0.43) possibly_damaging(0.636) TCGA-Z2-A8RT-06 19 49813613 49813613 G A SLC6A16 Silent p.F190F 0.44 TCGA-Z2-A8RT-06 19 49965847 49965847 C T ALDH16A1 Silent p.I311I 0.36 TCGA-Z2-A8RT-06 19 49969034 49969034 C T ALDH16A1 Silent p.F536F 0.37 TCGA-Z2-A8RT-06 19 50099933 50099933 C T PRR12 Missense_Mutation p.L781F 0.40 possibly_damaging(0.765) TCGA-Z2-A8RT-06 19 50170338 50170338 C T BCL2L12 Missense_Mutation p.S141F 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.807) TCGA-Z2-A8RT-06 19 50170339 50170339 C T BCL2L12 Silent p.S141S 0.35 TCGA-Z2-A8RT-06 19 50210802 50210802 C T CPT1C Silent p.I457I 0.31 TCGA-Z2-A8RT-06 19 50247621 50247621 C T TSKS Missense_Mutation p.E410K 0.31 deleterious(0.02) possibly_damaging(0.563) TCGA-Z2-A8RT-06 19 50370392 50370392 G A PNKP Silent p.L24L 0.34 TCGA-Z2-A8RT-06 19 50411942 50411942 G A NUP62 Silent p.L375L 0.40 TCGA-Z2-A8RT-06 19 50498080 50498080 G A VRK3 Silent p.A287A 0.27 TCGA-Z2-A8RT-06 19 50789791 50789791 G A MYH14 Missense_Mutation p.R1531Q 0.44 tolerated(0.23) benign(0.358) TCGA-Z2-A8RT-06 19 50862836 50862836 G A NAPSA Missense_Mutation p.S287F 0.40 deleterious(0) probably_damaging(0.975) TCGA-Z2-A8RT-06 19 50926285 50926285 C T SPIB Silent p.F110F 0.30 TCGA-Z2-A8RT-06 19 50940925 50940925 G A MYBPC2 Silent p.K174K 0.40 TCGA-Z2-A8RT-06 19 50957377 50957377 C T MYBPC2 Missense_Mutation p.T617I 0.34 tolerated(0.06) benign(0.117) TCGA-Z2-A8RT-06 19 50957423 50957423 C T MYBPC2 Silent p.F632F 0.39 TCGA-Z2-A8RT-06 19 51021653 51021653 C T LRRC4B Silent p.T439T 0.46 TCGA-Z2-A8RT-06 19 51132572 51132572 C T SYT3 Silent p.R420R 0.42 TCGA-Z2-A8RT-06 19 51165087 51165087 C T SHANK1 3'UTR 0.50 TCGA-Z2-A8RT-06 19 51172507 51172507 G A SHANK1 Missense_Mutation p.P904S 0.27 benign(0.094) TCGA-Z2-A8RT-06 19 51329176 51329176 C T KLK15 Missense_Mutation p.G216E 0.31 tolerated(0.14) possibly_damaging(0.608) TCGA-Z2-A8RT-06 19 51410075 51410075 G A KLK4 3'UTR 0.42 TCGA-Z2-A8RT-06 19 51452266 51452266 G A KLK5 Silent p.H147H 0.38 TCGA-Z2-A8RT-06 19 51483107 51483107 C T KLK7 Silent p.K181K 0.38 TCGA-Z2-A8RT-06 19 51535159 51535159 C T KLK12 Missense_Mutation p.G144S 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 19 51629028 51629028 C T SIGLEC9 Missense_Mutation p.T199I 0.36 deleterious(0.03) benign(0.436) TCGA-Z2-A8RT-06 19 51671464 51671464 G A CTD-3187F8.14 Intron 0.30 TCGA-Z2-A8RT-06 19 51955630 51955630 G A SIGLEC8 3'UTR 0.39 TCGA-Z2-A8RT-06 19 52033094 52033094 G A SIGLEC6 Missense_Mutation p.S299F 0.43 tolerated(0.22) possibly_damaging(0.531) TCGA-Z2-A8RT-06 19 52216726 52216726 C T HAS1 Missense_Mutation p.R564Q 0.33 tolerated(0.17) unknown(0) TCGA-Z2-A8RT-06 19 52272349 52272349 C T FPR2 Silent p.I146I 0.33 TCGA-Z2-A8RT-06 19 52328071 52328071 G A FPR3 3'UTR 0.39 TCGA-Z2-A8RT-06 19 52393993 52393993 G A ZNF649 Missense_Mutation p.P466S 0.41 tolerated(0.25) benign(0.11) TCGA-Z2-A8RT-06 19 52394837 52394837 C A ZNF649 Silent p.G184G 0.37 TCGA-Z2-A8RT-06 19 52477726 52477726 A G ZNF350 5'UTR 0.38 TCGA-Z2-A8RT-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.35 deleterious(0.01) possibly_damaging(0.895) TCGA-Z2-A8RT-06 19 53304567 53304567 G A ZNF28 Silent p.S177S 0.32 TCGA-Z2-A8RT-06 19 53473828 53473828 T C ZNF702P RNA 0.37 TCGA-Z2-A8RT-06 19 53612696 53612696 G A ZNF415 Missense_Mutation p.S201L 0.28 tolerated(0.09) probably_damaging(0.978) TCGA-Z2-A8RT-06 19 53762080 53762080 T C VN1R2 Missense_Mutation p.F151S 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-Z2-A8RT-06 19 53770460 53770460 C T VN1R4 Nonsense_Mutation p.W153* 0.29 TCGA-Z2-A8RT-06 19 53911900 53911900 T A ZNF765 Missense_Mutation p.F364L 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-Z2-A8RT-06 19 53994017 53994017 C T ZNF813 Silent p.S177S 0.33 TCGA-Z2-A8RT-06 19 53995989 53995989 C T ZNF813 3'UTR 0.48 TCGA-Z2-A8RT-06 19 54081127 54081127 C T ZNF331 Missense_Mutation p.S438F 0.42 deleterious(0) benign(0.133) TCGA-Z2-A8RT-06 19 54139956 54139956 C T DPRX Missense_Mutation p.T97I 0.37 tolerated(0.07) benign(0.176) TCGA-Z2-A8RT-06 19 54139957 54139957 C T DPRX Silent p.T97T 0.37 TCGA-Z2-A8RT-06 19 54215556 54215556 C T MIR517A RNA 0.36 TCGA-Z2-A8RT-06 19 54257292 54257292 G A MIR527 RNA 0.37 TCGA-Z2-A8RT-06 19 54394951 54394951 C T PRKCG Missense_Mutation p.P185S 0.34 deleterious(0.05) benign(0.143) TCGA-Z2-A8RT-06 19 54445627 54445627 C T CACNG7 3'UTR 0.46 TCGA-Z2-A8RT-06 19 54672292 54672292 C T TMC4 Missense_Mutation p.G192E 0.44 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 19 54745696 54745696 C T LILRA6 Silent p.G138G 0.13 TCGA-Z2-A8RT-06 19 54783810 54783810 T A LILRB2 Missense_Mutation p.K64I 0.36 deleterious(0) possibly_damaging(0.693) TCGA-Z2-A8RT-06 19 54783817 54783817 T G LILRB2 Silent p.R62R 0.38 TCGA-Z2-A8RT-06 19 55086314 55086314 G A LILRA2 Missense_Mutation p.E157K 0.40 deleterious(0.03) probably_damaging(0.938) TCGA-Z2-A8RT-06 19 55106749 55106749 C T LILRA1 Silent p.I181I 0.38 TCGA-Z2-A8RT-06 19 55112239 55112239 G A LILRA1 Missense_Mutation p.G476E 0.33 deleterious(0) possibly_damaging(0.891) TCGA-Z2-A8RT-06 19 55143045 55143045 C T LILRB1 Silent p.T55T 0.38 TCGA-Z2-A8RT-06 19 55177320 55177320 T A LILRB4 Missense_Mutation p.L271H 0.35 deleterious(0) probably_damaging(0.965) TCGA-Z2-A8RT-06 19 55179193 55179193 C T LILRB4 Silent p.F383F 0.46 TCGA-Z2-A8RT-06 19 55220549 55220549 G A AC098784.2 3'Flank 0.24 TCGA-Z2-A8RT-06 19 55239264 55239264 C T KIR3DL3 Silent p.S181S 0.34 TCGA-Z2-A8RT-06 19 55378187 55378187 G T KIR3DL2 3'UTR 0.37 TCGA-Z2-A8RT-06 19 55420773 55420773 C T NCR1 Silent p.F175F 0.52 TCGA-Z2-A8RT-06 19 55450410 55450410 C T NLRP7 Missense_Mutation p.E593K 0.45 tolerated(0.06) benign(0.102) TCGA-Z2-A8RT-06 19 55494550 55494550 C T NLRP2 Missense_Mutation p.S495F 0.44 deleterious(0.05) benign(0.352) TCGA-Z2-A8RT-06 19 55496526 55496526 C T NLRP2 Silent p.S714S 0.33 TCGA-Z2-A8RT-06 19 55713641 55713641 G A PTPRH Silent p.S312S 0.37 TCGA-Z2-A8RT-06 19 55858388 55858388 C T SUV420H2 Silent p.L320L 0.50 TCGA-Z2-A8RT-06 19 56226522 56226522 G A NLRP9 Silent p.S800S 0.32 TCGA-Z2-A8RT-06 19 56243701 56243701 G A NLRP9 Missense_Mutation p.S499L 0.38 deleterious(0.01) benign(0.247) TCGA-Z2-A8RT-06 19 56320299 56320299 C A NLRP11 Missense_Mutation p.K559N 0.38 tolerated(0.13) benign(0.399) TCGA-Z2-A8RT-06 19 56369635 56369635 G A NLRP4 Silent p.T292T 0.44 TCGA-Z2-A8RT-06 19 56369701 56369701 C T NLRP4 Silent p.F314F 0.37 TCGA-Z2-A8RT-06 19 56369836 56369836 A C NLRP4 Missense_Mutation p.K359N 0.49 tolerated(0.22) benign(0.07) TCGA-Z2-A8RT-06 19 56370525 56370525 C T NLRP4 Missense_Mutation p.S589F 0.41 deleterious(0) possibly_damaging(0.861) TCGA-Z2-A8RT-06 19 56413448 56413448 G A NLRP13 Silent p.F914F 0.34 TCGA-Z2-A8RT-06 19 56416389 56416389 C T NLRP13 Missense_Mutation p.G846E 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 19 56424351 56424351 C T NLRP13 Missense_Mutation p.E278K 0.41 deleterious(0.01) benign(0.446) TCGA-Z2-A8RT-06 19 56539459 56539459 G A NLRP5 Silent p.E620E 0.35 TCGA-Z2-A8RT-06 19 56539850 56539850 G A NLRP5 Missense_Mutation p.E751K 0.37 tolerated(0.11) benign(0.232) TCGA-Z2-A8RT-06 19 56614409 56614409 G A ZNF787 Intron 0.30 TCGA-Z2-A8RT-06 19 56701523 56701523 G A ZSCAN5B Silent p.L387L 0.41 TCGA-Z2-A8RT-06 19 57293325 57293325 G A ZIM2 Silent p.S214S 0.27 TCGA-Z2-A8RT-06 19 57293326 57293326 G A ZIM2 Missense_Mutation p.S214F 0.27 tolerated(0.07) possibly_damaging(0.614) TCGA-Z2-A8RT-06 19 57301237 57301237 C T ZIM2 Intron 0.63 TCGA-Z2-A8RT-06 19 57325488 57325488 C T PEG3 Missense_Mutation p.G1441E 0.42 tolerated(0.05) probably_damaging(0.952) TCGA-Z2-A8RT-06 19 57328594 57328594 C T PEG3 Missense_Mutation p.D406N 0.39 tolerated(0.33) benign(0.006) TCGA-Z2-A8RT-06 19 57334202 57334202 C T PEG3 Missense_Mutation p.D162N 0.29 tolerated(0.1) benign(0.001) TCGA-Z2-A8RT-06 19 5751748 5751748 G A CATSPERD Missense_Mutation p.A360T 0.44 tolerated(0.65) benign(0.043) TCGA-Z2-A8RT-06 19 57641724 57641724 G A USP29 Missense_Mutation p.E561K 0.39 tolerated(0.57) benign(0.01) TCGA-Z2-A8RT-06 19 57646552 57646552 G A ZIM3 Missense_Mutation p.H385Y 0.38 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 19 57647266 57647266 C T ZIM3 Missense_Mutation p.D147N 0.39 tolerated(0.15) benign(0) TCGA-Z2-A8RT-06 19 5770965 5770965 G A CATSPERD Missense_Mutation p.D549N 0.41 tolerated(0.07) possibly_damaging(0.867) TCGA-Z2-A8RT-06 19 5785467 5785467 G A CTB-54O9.9 Missense_Mutation p.P25S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 19 58018159 58018159 C T ZNF773 Silent p.S232S 0.42 TCGA-Z2-A8RT-06 19 58132682 58132682 C T ZNF134 Missense_Mutation p.P399S 0.39 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 19 58132751 58132751 C T ZNF134 Missense_Mutation p.H422Y 0.40 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 19 58187541 58187541 C T ZSCAN4 Nonsense_Mutation p.Q10* 0.35 TCGA-Z2-A8RT-06 19 58232444 58232444 C T ZNF671 Missense_Mutation p.G337E 0.29 tolerated(0.09) probably_damaging(1) TCGA-Z2-A8RT-06 19 58384867 58384867 G A ZNF814 Missense_Mutation p.P631S 0.35 deleterious(0.02) benign(0.248) TCGA-Z2-A8RT-06 19 58549252 58549252 C T ZSCAN1 Silent p.T16T 0.35 TCGA-Z2-A8RT-06 19 58578784 58578784 C T ZNF135 Missense_Mutation p.S335F 0.30 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 19 58640732 58640732 A C ZNF329 Missense_Mutation p.L47V 0.40 tolerated(0.2) benign(0.012) TCGA-Z2-A8RT-06 19 58757775 58757775 G A ZNF544 Missense_Mutation p.E48K 0.37 tolerated(0.64) benign(0.209) TCGA-Z2-A8RT-06 19 58863613 58863613 C T A1BG Intron 0.47 TCGA-Z2-A8RT-06 19 58967792 58967792 C T ZNF324B Missense_Mutation p.P494L 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-Z2-A8RT-06 19 59010630 59010630 G A SLC27A5 Intron 0.39 TCGA-Z2-A8RT-06 19 5941647 5941647 G A RANBP3 Missense_Mutation p.P131S 0.32 deleterious(0) possibly_damaging(0.721) TCGA-Z2-A8RT-06 19 6270715 6270715 G A MLLT1 Missense_Mutation p.P23L 0.25 deleterious(0.01) benign(0.168) TCGA-Z2-A8RT-06 19 6467774 6467774 G A DENND1C Missense_Mutation p.P716L 0.52 deleterious_low_confidence(0) benign(0.105) TCGA-Z2-A8RT-06 19 6697711 6697711 C T C3 Silent p.V845V 0.37 TCGA-Z2-A8RT-06 19 6730190 6730190 G A GPR108 3'UTR 0.35 TCGA-Z2-A8RT-06 19 691945 691945 G A PRSS57 Silent p.P98P 0.53 TCGA-Z2-A8RT-06 19 763507 763507 G A MISP Missense_Mutation p.E653K 0.31 tolerated(0.11) probably_damaging(0.969) TCGA-Z2-A8RT-06 19 7689236 7689236 C T XAB2 Missense_Mutation p.M306I 0.37 tolerated(0.67) benign(0.005) TCGA-Z2-A8RT-06 19 7754287 7754287 C T FCER2 Missense_Mutation p.R253Q 0.45 tolerated(0.33) benign(0.003) TCGA-Z2-A8RT-06 19 7805426 7805426 G - CD209 3'UTR 0.25 TCGA-Z2-A8RT-06 19 7830547 7830547 A C CLEC4M Missense_Mutation p.S80R 0.40 tolerated(0.39) probably_damaging(0.988) TCGA-Z2-A8RT-06 19 813217 813217 C T LPPR3 Missense_Mutation p.G532R 0.40 tolerated(0.39) possibly_damaging(0.623) TCGA-Z2-A8RT-06 19 8159380 8159380 A T FBN3 Missense_Mutation p.F1952Y 0.36 tolerated(0.25) possibly_damaging(0.836) TCGA-Z2-A8RT-06 19 8438588 8438588 G A ANGPTL4 Splice_Site p.X347_splice 0.35 TCGA-Z2-A8RT-06 19 8438589 8438589 G A ANGPTL4 Missense_Mutation p.G347E 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 19 8668681 8668681 C T ADAMTS10 Missense_Mutation p.G175R 0.43 tolerated(0.31) benign(0.015) TCGA-Z2-A8RT-06 19 868135 868135 G A MED16 Missense_Mutation p.S867F 0.41 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-Z2-A8RT-06 19 8807894 8807894 G A ACTL9 Silent p.I386I 0.42 TCGA-Z2-A8RT-06 19 889669 889669 T A MED16 Missense_Mutation p.N139I 0.32 deleterious(0) benign(0.035) TCGA-Z2-A8RT-06 19 8971815 8971815 G A MUC16 Silent p.S14259S 0.31 TCGA-Z2-A8RT-06 19 8976823 8976823 G A MUC16 Silent p.F14081F 0.36 TCGA-Z2-A8RT-06 19 8999465 8999465 C T MUC16 Silent p.E13570E 0.23 TCGA-Z2-A8RT-06 19 9015632 9015632 G A MUC16 Silent p.L12731L 0.31 TCGA-Z2-A8RT-06 19 9015661 9015661 G A MUC16 Missense_Mutation p.S12721F 0.44 probably_damaging(0.962) TCGA-Z2-A8RT-06 19 9047511 9047511 C T MUC16 Missense_Mutation p.D11374N 0.44 possibly_damaging(0.504) TCGA-Z2-A8RT-06 19 9048029 9048029 G A MUC16 Missense_Mutation p.S11201F 0.34 possibly_damaging(0.702) TCGA-Z2-A8RT-06 19 9048950 9048950 G A MUC16 Missense_Mutation p.P10894L 0.36 benign(0.001) TCGA-Z2-A8RT-06 19 9058190 9058190 G A MUC16 Silent p.S9752S 0.44 TCGA-Z2-A8RT-06 19 9061843 9061843 C T MUC16 Missense_Mutation p.E8535K 0.37 unknown(0) TCGA-Z2-A8RT-06 19 9062579 9062579 G A MUC16 Silent p.F8289F 0.43 TCGA-Z2-A8RT-06 19 9062922 9062922 G A MUC16 Missense_Mutation p.S8175L 0.39 unknown(0) TCGA-Z2-A8RT-06 19 9065509 9065509 G A MUC16 Missense_Mutation p.P7313S 0.42 unknown(0) TCGA-Z2-A8RT-06 19 9065862 9065862 G A MUC16 Missense_Mutation p.S7195F 0.40 unknown(0) TCGA-Z2-A8RT-06 19 9069120 9069120 G A MUC16 Missense_Mutation p.S6109F 0.32 unknown(0) TCGA-Z2-A8RT-06 19 9070508 9070508 G A MUC16 Silent p.S5646S 0.37 TCGA-Z2-A8RT-06 19 9071550 9071550 G A MUC16 Missense_Mutation p.S5299L 0.42 unknown(0) TCGA-Z2-A8RT-06 19 9076389 9076389 G A MUC16 Missense_Mutation p.S3686L 0.30 unknown(0) TCGA-Z2-A8RT-06 19 9076865 9076865 G A MUC16 Silent p.I3527I 0.34 TCGA-Z2-A8RT-06 19 9077688 9077688 C T MUC16 Missense_Mutation p.G3253E 0.41 unknown(0) TCGA-Z2-A8RT-06 19 9082924 9082924 C T MUC16 Missense_Mutation p.G2964E 0.39 unknown(0) TCGA-Z2-A8RT-06 19 9083865 9083865 G A MUC16 Silent p.I2650I 0.43 TCGA-Z2-A8RT-06 19 9084646 9084646 G A MUC16 Missense_Mutation p.S2390F 0.45 unknown(0) TCGA-Z2-A8RT-06 19 9084844 9084844 G A MUC16 Missense_Mutation p.P2324L 0.39 unknown(0) TCGA-Z2-A8RT-06 19 9085057 9085057 G A MUC16 Missense_Mutation p.S2253F 0.43 unknown(0) TCGA-Z2-A8RT-06 19 9085550 9085550 C T MUC16 Missense_Mutation p.E2089K 0.34 unknown(0) TCGA-Z2-A8RT-06 19 9089295 9089295 G A MUC16 Silent p.L840L 0.34 TCGA-Z2-A8RT-06 19 9324650 9324650 G A OR7D4 Silent p.F288F 0.40 TCGA-Z2-A8RT-06 19 9362202 9362202 C T OR7E24 Silent p.F161F 0.38 TCGA-Z2-A8RT-06 19 9525177 9525177 G A ZNF266 Missense_Mutation p.P142S 0.36 tolerated(0.18) benign(0.006) TCGA-Z2-A8RT-06 19 9578263 9578263 G A ZNF560 Missense_Mutation p.H454Y 0.38 deleterious(0) benign(0.152) TCGA-Z2-A8RT-06 19 9801776 9801776 C T ZNF812 Missense_Mutation p.E135K 0.40 tolerated(1) probably_damaging(0.991) TCGA-Z2-A8RT-06 19 9921647 9921647 G A FBXL12 Silent p.I302I 0.42 TCGA-Z2-A8RT-06 1 103455085 103455085 T A COL11A1 Nonsense_Mutation p.K795* 0.39 TCGA-Z2-A8RT-06 1 103470041 103470041 C T COL11A1 Missense_Mutation p.E635K 0.39 unknown(0) TCGA-Z2-A8RT-06 1 103488416 103488416 C T COL11A1 Missense_Mutation p.G376E 0.41 possibly_damaging(0.517) TCGA-Z2-A8RT-06 1 104297357 104297357 G A AMY1C Missense_Mutation p.G341E 0.08 deleterious(0.03) possibly_damaging(0.674) TCGA-Z2-A8RT-06 1 10459262 10459262 C T PGD Intron 0.44 TCGA-Z2-A8RT-06 1 10502506 10502506 C T APITD1-CORT Intron 0.34 TCGA-Z2-A8RT-06 1 107973473 107973473 G A NTNG1 Missense_Mutation p.E397K 0.32 deleterious(0.02) benign(0.186) TCGA-Z2-A8RT-06 1 108247590 108247590 C T VAV3 Missense_Mutation p.M532I 0.33 deleterious(0) benign(0.261) TCGA-Z2-A8RT-06 1 109727679 109727679 C T KIAA1324 Missense_Mutation p.S322F 0.35 deleterious(0.01) possibly_damaging(0.694) TCGA-Z2-A8RT-06 1 110086168 110086168 C T GPR61 Missense_Mutation p.S175F 0.35 tolerated(0.14) benign(0.002) TCGA-Z2-A8RT-06 1 110146167 110146167 C T GNAT2 Splice_Site p.X292_splice 0.42 TCGA-Z2-A8RT-06 1 110596631 110596631 C T STRIP1 3'UTR 0.46 TCGA-Z2-A8RT-06 1 110738248 110738248 C T SLC6A17 Silent p.F511F 0.36 TCGA-Z2-A8RT-06 1 110768684 110768684 C T KCNC4 Missense_Mutation p.P568L 0.48 deleterious(0.02) benign(0.003) TCGA-Z2-A8RT-06 1 1115413 1115413 G A TTLL10 Splice_Site p.X67_splice 0.50 TCGA-Z2-A8RT-06 1 11187740 11187740 G C MTOR Missense_Mutation p.P2053A 0.36 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 1 111957061 111957061 C T OVGP1 3'UTR 0.33 TCGA-Z2-A8RT-06 1 112233958 112233958 C T RAP1A Intron 0.29 TCGA-Z2-A8RT-06 1 112303084 112303084 T G DDX20 Intron 0.43 TCGA-Z2-A8RT-06 1 113235380 113235380 C T MOV10 Intron 0.49 TCGA-Z2-A8RT-06 1 115229488 115229488 G A AMPD1 Missense_Mutation p.P120S 0.35 tolerated(0.07) benign(0.024) TCGA-Z2-A8RT-06 1 115272959 115272959 G A CSDE1 Missense_Mutation p.H472Y 0.53 deleterious(0.03) benign(0.3) TCGA-Z2-A8RT-06 1 115399878 115399878 C T SYCP1 Silent p.F73F 0.35 TCGA-Z2-A8RT-06 1 115537408 115537408 G A SYCP1 Silent p.K931K 0.42 TCGA-Z2-A8RT-06 1 115537531 115537531 C T SYCP1 Missense_Mutation p.S941F 0.54 deleterious(0) possibly_damaging(0.868) TCGA-Z2-A8RT-06 1 115537679 115537679 G A SYCP1 3'UTR 0.46 TCGA-Z2-A8RT-06 1 115576747 115576747 G A TSHB Missense_Mutation p.G106S 0.31 tolerated(0.35) benign(0.145) TCGA-Z2-A8RT-06 1 116675916 116675916 C T MAB21L3 Missense_Mutation p.P340L 0.32 tolerated(0.11) benign(0.105) TCGA-Z2-A8RT-06 1 11718916 11718916 C T FBXO44 Silent p.A204A 0.36 TCGA-Z2-A8RT-06 1 117307203 117307203 G A CD2 Silent p.R237R 0.37 TCGA-Z2-A8RT-06 1 117568133 117568133 A G CD101 Missense_Mutation p.S811G 0.31 tolerated(0.09) benign(0.128) TCGA-Z2-A8RT-06 1 117699542 117699542 C T VTCN1 Silent p.G33G 0.32 TCGA-Z2-A8RT-06 1 118535116 118535116 C T SPAG17 Silent p.V1778V 0.41 TCGA-Z2-A8RT-06 1 118538993 118538993 C T SPAG17 Missense_Mutation p.G1685S 0.48 deleterious(0.02) probably_damaging(0.986) TCGA-Z2-A8RT-06 1 118554863 118554863 C T SPAG17 Missense_Mutation p.D1474N 0.35 tolerated(0.21) benign(0.335) TCGA-Z2-A8RT-06 1 118658002 118658002 C T SPAG17 Silent p.G126G 0.42 TCGA-Z2-A8RT-06 1 11906027 11906027 C T NPPA 3'UTR 0.35 TCGA-Z2-A8RT-06 1 11918419 11918419 C T NPPB Silent p.R80R 0.31 TCGA-Z2-A8RT-06 1 119427777 119427777 C T TBX15 Missense_Mutation p.E357K 0.40 tolerated(0.1) benign(0.049) TCGA-Z2-A8RT-06 1 119427778 119427778 C T TBX15 Missense_Mutation p.M356I 0.42 tolerated(0.36) possibly_damaging(0.885) TCGA-Z2-A8RT-06 1 119428002 119428002 C T TBX15 Missense_Mutation p.E282K 0.47 deleterious(0) probably_damaging(0.98) TCGA-Z2-A8RT-06 1 12034853 12034853 C T PLOD1 Silent p.F724F 0.40 TCGA-Z2-A8RT-06 1 120437926 120437926 C T ADAM30 Missense_Mutation p.G345E 0.37 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 1 12460250 12460250 C T VPS13D Missense_Mutation p.L3883F 0.40 probably_damaging(0.994) TCGA-Z2-A8RT-06 1 12711279 12711279 C T AADACL4 Silent p.F102F 0.44 TCGA-Z2-A8RT-06 1 12887523 12887523 C T PRAMEF11 Missense_Mutation p.E112K 0.43 deleterious(0) benign(0.167) TCGA-Z2-A8RT-06 1 12907474 12907474 C T HNRNPCL1 Silent p.E223E 0.36 TCGA-Z2-A8RT-06 1 12907820 12907820 G A HNRNPCL1 Missense_Mutation p.S108F 0.09 tolerated(0.38) possibly_damaging(0.671) TCGA-Z2-A8RT-06 1 12907865 12907865 C T HNRNPCL1 Missense_Mutation p.G93E 0.18 tolerated(0.14) benign(0.015) TCGA-Z2-A8RT-06 1 12919786 12919786 G A PRAMEF2 Missense_Mutation p.G176S 0.34 tolerated(0.21) probably_damaging(0.971) TCGA-Z2-A8RT-06 1 12941908 12941908 C T PRAMEF4 Silent p.V214V 0.26 TCGA-Z2-A8RT-06 1 12942930 12942930 G A PRAMEF4 Missense_Mutation p.R96C 0.43 tolerated(0.08) benign(0.009) TCGA-Z2-A8RT-06 1 13036532 13036532 G A PRAMEF22 Missense_Mutation p.E202K 0.26 tolerated(1) benign(0.035) TCGA-Z2-A8RT-06 1 1398081 1398081 C T ATAD3C Missense_Mutation p.S361F 0.50 deleterious(0) benign(0.373) TCGA-Z2-A8RT-06 1 142713429 142713429 G A RP11-417J8.6 RNA 0.38 TCGA-Z2-A8RT-06 1 144852490 144852490 G A PDE4DIP Intron 0.15 TCGA-Z2-A8RT-06 1 144880823 144880823 G A PDE4DIP Nonsense_Mutation p.Q1269* 0.20 TCGA-Z2-A8RT-06 1 145273277 145273277 C T NOTCH2NL Missense_Mutation p.A44V 0.09 tolerated(0.49) possibly_damaging(0.847) TCGA-Z2-A8RT-06 1 145273278 145273278 C T NOTCH2NL Silent p.A44A 0.09 TCGA-Z2-A8RT-06 1 145415768 145415768 A G HFE2 Missense_Mutation p.N196S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 145562829 145562829 G A ANKRD35 Silent p.R839R 0.83 TCGA-Z2-A8RT-06 1 146631125 146631125 G A PRKAB2 3'UTR 0.30 TCGA-Z2-A8RT-06 1 149763053 149763053 G A FCGR1A Missense_Mutation p.E369K 0.33 tolerated_low_confidence(0.94) benign(0.002) TCGA-Z2-A8RT-06 1 150255853 150255853 C G C1orf51 Missense_Mutation p.P59R 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-Z2-A8RT-06 1 150445039 150445039 C T RPRD2 Silent p.F1205F 0.38 TCGA-Z2-A8RT-06 1 150445040 150445040 C T RPRD2 Nonsense_Mutation p.Q1206* 0.36 TCGA-Z2-A8RT-06 1 150484950 150484950 C T ECM1 Silent p.Y429Y 0.36 TCGA-Z2-A8RT-06 1 150960359 150960359 G A ANXA9 Silent p.R208R 0.31 TCGA-Z2-A8RT-06 1 150981105 150981105 C T PRUNE 5'UTR 0.32 TCGA-Z2-A8RT-06 1 152187577 152187577 C T HRNR Silent p.G2176G 0.14 TCGA-Z2-A8RT-06 1 152277338 152277338 C T FLG Missense_Mutation p.D3342N 0.36 unknown(0) TCGA-Z2-A8RT-06 1 152280098 152280098 C T FLG Missense_Mutation p.E2422K 0.40 benign(0.189) TCGA-Z2-A8RT-06 1 152284329 152284329 C T FLG Silent p.E1011E 0.38 TCGA-Z2-A8RT-06 1 152286458 152286458 C T FLG Missense_Mutation p.D302N 0.39 probably_damaging(0.958) TCGA-Z2-A8RT-06 1 152287917 152287917 C T FLG Missense_Mutation p.E6K 0.34 benign(0.201) TCGA-Z2-A8RT-06 1 152326348 152326348 G A FLG2 Missense_Mutation p.S1305F 0.41 possibly_damaging(0.608) TCGA-Z2-A8RT-06 1 152483994 152483994 A T LCE5A 5'UTR 0.29 TCGA-Z2-A8RT-06 1 152760182 152760182 G A LCE1E 3'UTR 0.23 TCGA-Z2-A8RT-06 1 152944680 152944680 C T SPRR4 3'UTR 0.25 TCGA-Z2-A8RT-06 1 153012487 153012487 G A SPRR2D 3'UTR 0.39 TCGA-Z2-A8RT-06 1 153122298 153122298 G A SPRR2G 3'UTR 0.36 TCGA-Z2-A8RT-06 1 153177245 153177245 C T LELP1 Missense_Mutation p.P21L 0.41 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-Z2-A8RT-06 1 153275067 153275067 G A PGLYRP3 Silent p.I182I 0.33 TCGA-Z2-A8RT-06 1 153579999 153579999 C T S100A16 3'UTR 0.38 TCGA-Z2-A8RT-06 1 153591487 153591487 T C S100A13 Missense_Mutation p.K61E 0.37 tolerated(0.71) benign(0.004) TCGA-Z2-A8RT-06 1 153923935 153923935 G A CRTC2 Missense_Mutation p.S402F 0.46 tolerated(0.08) possibly_damaging(0.548) TCGA-Z2-A8RT-06 1 153963240 153963240 T G RPS27 5'UTR 0.42 TCGA-Z2-A8RT-06 1 154241257 154241257 C T UBAP2L Missense_Mutation p.H999Y 0.40 deleterious(0) possibly_damaging(0.794) TCGA-Z2-A8RT-06 1 154296733 154296733 C T AQP10 Intron 0.49 TCGA-Z2-A8RT-06 1 154296921 154296921 C T AQP10 Missense_Mutation p.P291S 0.36 tolerated(0.21) benign(0.007) TCGA-Z2-A8RT-06 1 154966286 154966286 C G LENEP 3'UTR 0.07 TCGA-Z2-A8RT-06 1 155156651 155156651 C T TRIM46 Silent p.F755F 0.41 TCGA-Z2-A8RT-06 1 155156724 155156724 C T TRIM46 3'UTR 0.27 TCGA-Z2-A8RT-06 1 155176029 155176029 C T THBS3 Missense_Mutation p.R83Q 0.34 deleterious(0.03) benign(0.012) TCGA-Z2-A8RT-06 1 155227295 155227295 G A SCAMP3 Missense_Mutation p.A224V 0.35 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 1 155895500 155895500 G A KIAA0907 Silent p.F272F 0.46 TCGA-Z2-A8RT-06 1 156128274 156128274 C T SEMA4A Silent p.F153F 0.41 TCGA-Z2-A8RT-06 1 156235628 156235628 G A SMG5 Missense_Mutation p.T600I 0.36 tolerated(0.21) benign(0.003) TCGA-Z2-A8RT-06 1 156347220 156347220 C G RHBG Missense_Mutation p.L106V 0.33 deleterious(0.04) possibly_damaging(0.658) TCGA-Z2-A8RT-06 1 156879646 156879646 A T PEAR1 Missense_Mutation p.Q505H 0.18 deleterious(0.04) possibly_damaging(0.687) TCGA-Z2-A8RT-06 1 156882345 156882345 G A PEAR1 Missense_Mutation p.E714K 0.43 tolerated(0.32) benign(0.434) TCGA-Z2-A8RT-06 1 157494322 157494322 G C FCRL5 Silent p.T662T 0.46 TCGA-Z2-A8RT-06 1 157497665 157497665 G A FCRL5 Missense_Mutation p.L568F 0.34 tolerated(0.07) possibly_damaging(0.833) TCGA-Z2-A8RT-06 1 157545328 157545328 C T FCRL4 Missense_Mutation p.D512N 0.32 deleterious(0.01) benign(0.052) TCGA-Z2-A8RT-06 1 157650796 157650796 C T FCRL3 Missense_Mutation p.M644I 0.38 tolerated(0.24) benign(0.005) TCGA-Z2-A8RT-06 1 157740350 157740350 C T FCRL2 Silent p.K53K 0.29 TCGA-Z2-A8RT-06 1 157772394 157772394 C T FCRL1 Missense_Mutation p.G127E 0.45 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 157803070 157803070 C T CD5L Silent p.G317G 0.40 TCGA-Z2-A8RT-06 1 157803071 157803071 C T CD5L Missense_Mutation p.G317E 0.41 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 1 15798550 15798550 G A CELA2A 3'UTR 0.31 TCGA-Z2-A8RT-06 1 158368808 158368808 C T OR10T2 Missense_Mutation p.G150E 0.45 tolerated(0.22) benign(0.274) TCGA-Z2-A8RT-06 1 158368953 158368953 G A OR10T2 Silent p.L102L 0.33 TCGA-Z2-A8RT-06 1 158435844 158435844 C T OR10K1 Missense_Mutation p.H165Y 0.41 tolerated(0.07) benign(0.012) TCGA-Z2-A8RT-06 1 158618334 158618334 C T SPTA1 Missense_Mutation p.G1227S 0.35 tolerated(0.09) benign(0.016) TCGA-Z2-A8RT-06 1 158670049 158670049 G A OR6K2 Missense_Mutation p.P132S 0.36 tolerated(0.12) benign(0.099) TCGA-Z2-A8RT-06 1 158687848 158687848 G A OR6K3 Missense_Mutation p.L20F 0.29 tolerated(0.72) benign(0.003) TCGA-Z2-A8RT-06 1 158724890 158724890 C T OR6K6 Silent p.S95S 0.39 TCGA-Z2-A8RT-06 1 158725336 158725336 C T OR6K6 Missense_Mutation p.S244F 0.34 deleterious(0.03) probably_damaging(0.952) TCGA-Z2-A8RT-06 1 158725572 158725572 G A OR6K6 Missense_Mutation p.D323N 0.40 deleterious(0.02) benign(0.111) TCGA-Z2-A8RT-06 1 158736179 158736179 G A OR6N1 Silent p.L98L 0.31 TCGA-Z2-A8RT-06 1 158813775 158813775 G A MNDA Missense_Mutation p.E145K 0.42 tolerated(0.36) benign(0.045) TCGA-Z2-A8RT-06 1 158913619 158913619 G A PYHIN1 Missense_Mutation p.D348N 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 15905505 15905505 G A AGMAT Missense_Mutation p.T190M 0.34 tolerated(0.06) benign(0.269) TCGA-Z2-A8RT-06 1 159284354 159284354 G A OR10J3 Silent p.F32F 0.41 TCGA-Z2-A8RT-06 1 159842796 159842796 C T CCDC19 Silent p.E505E 0.35 TCGA-Z2-A8RT-06 1 159898289 159898289 G A IGSF9 Silent p.T963T 0.47 TCGA-Z2-A8RT-06 1 160011232 160011232 T C KCNJ10 Missense_Mutation p.Q364R 0.47 tolerated(0.56) benign(0.002) TCGA-Z2-A8RT-06 1 160011237 160011237 C A KCNJ10 Missense_Mutation p.R362S 0.40 deleterious(0) possibly_damaging(0.794) TCGA-Z2-A8RT-06 1 160099901 160099901 C T ATP1A2 Missense_Mutation p.H491Y 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-Z2-A8RT-06 1 160134154 160134154 C T ATP1A4 Silent p.I329I 0.28 TCGA-Z2-A8RT-06 1 160137159 160137159 C T ATP1A4 Missense_Mutation p.P483L 0.34 tolerated(0.05) possibly_damaging(0.839) TCGA-Z2-A8RT-06 1 160460372 160460372 T A SLAMF6 Missense_Mutation p.K250N 0.37 tolerated(0.06) benign(0.053) TCGA-Z2-A8RT-06 1 160721173 160721173 G A SLAMF7 Missense_Mutation p.E270K 0.42 tolerated(0.15) benign(0.308) TCGA-Z2-A8RT-06 1 16103758 16103758 C T FBLIM1 3'Flank 0.40 TCGA-Z2-A8RT-06 1 161184024 161184024 T A NDUFS2 3'UTR 0.50 TCGA-Z2-A8RT-06 1 162745585 162745585 C T DDR2 Missense_Mutation p.S667F 0.40 tolerated(0.07) possibly_damaging(0.878) TCGA-Z2-A8RT-06 1 16456750 16456750 G A EPHA2 Silent p.S880S 0.40 TCGA-Z2-A8RT-06 1 164769049 164769049 C T PBX1 Silent p.F208F 0.35 TCGA-Z2-A8RT-06 1 164815917 164815917 C T PBX1 3'UTR 0.40 TCGA-Z2-A8RT-06 1 165177364 165177364 C T LMX1A Silent p.K251K 0.33 TCGA-Z2-A8RT-06 1 166958546 166958546 G A MAEL 5'UTR 0.36 TCGA-Z2-A8RT-06 1 167097663 167097663 G A DUSP27 Missense_Mutation p.G1099R 0.39 deleterious(0.04) benign(0.21) TCGA-Z2-A8RT-06 1 167097697 167097697 G C DUSP27 Missense_Mutation p.G1110A 0.35 tolerated(0.08) benign(0.008) TCGA-Z2-A8RT-06 1 167097698 167097698 G A DUSP27 Silent p.G1110G 0.38 TCGA-Z2-A8RT-06 1 167814979 167814979 C T ADCY10 Silent p.K943K 0.43 TCGA-Z2-A8RT-06 1 16892142 16892142 G A NBPF1 Missense_Mutation p.S1017F 0.03 deleterious(0) possibly_damaging(0.632) TCGA-Z2-A8RT-06 1 169435017 169435017 A T SLC19A2 3'UTR 0.39 TCGA-Z2-A8RT-06 1 169695856 169695856 C T SELE Silent p.R579R 0.43 TCGA-Z2-A8RT-06 1 169702117 169702117 T G SELE Silent p.G20G 0.43 TCGA-Z2-A8RT-06 1 17046501 17046501 C T ESPNP RNA 0.09 TCGA-Z2-A8RT-06 1 171083175 171083175 G A FMO3 Missense_Mutation p.D286N 0.49 deleterious(0.02) probably_damaging(0.991) TCGA-Z2-A8RT-06 1 171086385 171086385 C T FMO3 Missense_Mutation p.P468S 0.42 tolerated(0.2) benign(0.314) TCGA-Z2-A8RT-06 1 171247933 171247933 G A FMO1 Missense_Mutation p.D184N 0.45 deleterious(0.05) possibly_damaging(0.902) TCGA-Z2-A8RT-06 1 171250074 171250074 G A FMO1 Silent p.K259K 0.42 TCGA-Z2-A8RT-06 1 172425623 172425623 G A C1orf105 Missense_Mutation p.M89I 0.41 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 1 172628640 172628640 G A FASLG Missense_Mutation p.G100E 0.23 tolerated(0.05) benign(0.025) TCGA-Z2-A8RT-06 1 172635076 172635076 C T FASLG Missense_Mutation p.H256Y 0.38 deleterious(0.04) possibly_damaging(0.53) TCGA-Z2-A8RT-06 1 173493938 173493938 C T SLC9C2 Missense_Mutation p.E832K 0.35 deleterious(0) possibly_damaging(0.736) TCGA-Z2-A8RT-06 1 173526549 173526549 C T SLC9C2 Missense_Mutation p.G382E 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 173542447 173542447 G A SLC9C2 Missense_Mutation p.S307L 0.35 deleterious(0) possibly_damaging(0.622) TCGA-Z2-A8RT-06 1 173876635 173876635 G T SERPINC1 Silent p.R391R 0.40 TCGA-Z2-A8RT-06 1 17556683 17556683 C T PADI1 Nonsense_Mutation p.R345* 0.48 TCGA-Z2-A8RT-06 1 17570752 17570752 C T PADI1 3'UTR 0.42 TCGA-Z2-A8RT-06 1 17597610 17597610 G A PADI3 Silent p.R328R 0.26 TCGA-Z2-A8RT-06 1 17664547 17664547 G A PADI4 Nonsense_Mutation p.W141* 0.39 TCGA-Z2-A8RT-06 1 17681090 17681090 C T PADI4 Silent p.S406S 0.41 TCGA-Z2-A8RT-06 1 176926937 176926937 G A ASTN1 Silent p.F588F 0.41 TCGA-Z2-A8RT-06 1 176983946 176983946 C T ASTN1 Missense_Mutation p.E502K 0.40 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 1 177927484 177927484 G A SEC16B Missense_Mutation p.S383F 0.31 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 178423656 178423656 T A RASAL2 Missense_Mutation p.F695Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 1 179337973 179337973 C T AXDND1 Missense_Mutation p.R46C 0.31 tolerated(0.18) possibly_damaging(0.633) TCGA-Z2-A8RT-06 1 179460696 179460696 G A AXDND1 Missense_Mutation p.M705I 0.47 deleterious(0.01) benign(0.009) TCGA-Z2-A8RT-06 1 179564820 179564820 C T TDRD5 Missense_Mutation p.P233L 0.37 deleterious(0) benign(0.3) TCGA-Z2-A8RT-06 1 179783157 179783157 G A FAM163A Missense_Mutation p.V113M 0.32 tolerated(0.24) benign(0.059) TCGA-Z2-A8RT-06 1 180794071 180794071 C T XPR1 Missense_Mutation p.L316F 0.41 deleterious(0.03) possibly_damaging(0.81) TCGA-Z2-A8RT-06 1 181702804 181702804 G A CACNA1E Silent p.T1060T 0.42 TCGA-Z2-A8RT-06 1 181721350 181721350 C T CACNA1E Missense_Mutation p.T1268I 0.28 deleterious(0) probably_damaging(0.954) TCGA-Z2-A8RT-06 1 182026114 182026114 G A ZNF648 Silent p.F344F 0.44 TCGA-Z2-A8RT-06 1 182555032 182555032 G A RNASEL Missense_Mutation p.L304F 0.38 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 1 182615829 182615829 G A RGS8 3'UTR 0.43 TCGA-Z2-A8RT-06 1 183515282 183515282 C T SMG7 Missense_Mutation p.P805L 0.40 tolerated_low_confidence(0.1) possibly_damaging(0.859) TCGA-Z2-A8RT-06 1 184023560 184023560 C T TSEN15 Missense_Mutation p.L70F 0.35 deleterious(0.02) benign(0.191) TCGA-Z2-A8RT-06 1 184686044 184686044 G A EDEM3 Missense_Mutation p.R450C 0.36 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 1 185815166 185815166 C T HMCN1 Missense_Mutation p.P93S 0.26 probably_damaging(0.992) TCGA-Z2-A8RT-06 1 186292871 186292871 G A TPR Missense_Mutation p.P2082S 0.37 benign(0.398) TCGA-Z2-A8RT-06 1 186644503 186644503 G A PTGS2 Missense_Mutation p.P428L 0.41 tolerated(0.74) benign(0.005) TCGA-Z2-A8RT-06 1 18691895 18691895 G A IGSF21 Missense_Mutation p.R240Q 0.42 tolerated(0.32) benign(0.079) TCGA-Z2-A8RT-06 1 18703399 18703399 C T IGSF21 Missense_Mutation p.P403S 0.47 tolerated(0.26) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 18808878 18808878 G A KLHDC7A Missense_Mutation p.S468N 0.44 tolerated(0.15) benign(0.035) TCGA-Z2-A8RT-06 1 18961654 18961654 A G PAX7 Missense_Mutation p.E124G 0.34 tolerated(0.07) possibly_damaging(0.648) TCGA-Z2-A8RT-06 1 192153484 192153484 C T RGS18 Missense_Mutation p.L170F 0.51 tolerated(0.56) benign(0.081) TCGA-Z2-A8RT-06 1 19433340 19433340 G A UBR4 Missense_Mutation p.P4076S 0.39 benign(0.001) TCGA-Z2-A8RT-06 1 19495933 19495933 G A UBR4 Missense_Mutation p.S1246F 0.30 probably_damaging(0.952) TCGA-Z2-A8RT-06 1 19557399 19557399 G A EMC1 Missense_Mutation p.S668F 0.45 deleterious(0) probably_damaging(0.928) TCGA-Z2-A8RT-06 1 1961728 1961728 G A GABRD 3'UTR 0.43 TCGA-Z2-A8RT-06 1 196288665 196288665 T C KCNT2 Missense_Mutation p.D766G 0.37 deleterious(0.01) benign(0.202) TCGA-Z2-A8RT-06 1 196288667 196288667 C T KCNT2 Silent p.L765L 0.38 TCGA-Z2-A8RT-06 1 196295881 196295881 C T KCNT2 Missense_Mutation p.E748K 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-Z2-A8RT-06 1 196695653 196695653 G A CFH Missense_Mutation p.E643K 0.39 tolerated(0.38) benign(0.033) TCGA-Z2-A8RT-06 1 197008366 197008366 G A F13B 3'UTR 0.48 TCGA-Z2-A8RT-06 1 197024969 197024969 C T F13B Silent p.G410G 0.34 TCGA-Z2-A8RT-06 1 197390319 197390319 G A CRB1 Missense_Mutation p.G454E 0.40 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 1 198678823 198678823 G A PTPRC Missense_Mutation p.M347I 0.28 tolerated(0.48) benign(0) TCGA-Z2-A8RT-06 1 200817443 200817443 C T CAMSAP2 Missense_Mutation p.H516Y 0.35 tolerated(1) benign(0.059) TCGA-Z2-A8RT-06 1 200876988 200876988 C T C1orf106 Silent p.L183L 0.35 TCGA-Z2-A8RT-06 1 200882688 200882688 G A C1orf106 Silent p.R556R 0.35 TCGA-Z2-A8RT-06 1 200967584 200967584 C T KIF21B Missense_Mutation p.E669K 0.36 tolerated(0.12) probably_damaging(0.986) TCGA-Z2-A8RT-06 1 201043729 201043729 G A CACNA1S Silent p.F656F 0.48 TCGA-Z2-A8RT-06 1 201182572 201182572 G A IGFN1 Missense_Mutation p.G2851R 0.41 benign(0.255) TCGA-Z2-A8RT-06 1 201328369 201328369 C T TNNT2 Missense_Mutation p.G279E 0.44 deleterious(0) probably_damaging(0.978) TCGA-Z2-A8RT-06 1 201332483 201332483 C T TNNT2 Missense_Mutation p.E171K 0.39 deleterious(0.01) possibly_damaging(0.641) TCGA-Z2-A8RT-06 1 201981246 201981246 G A ELF3 Missense_Mutation p.E109K 0.56 deleterious(0.03) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 202287851 202287851 C T LGR6 Missense_Mutation p.A807V 0.41 tolerated(1) benign(0.047) TCGA-Z2-A8RT-06 1 202931521 202931521 G A CYB5R1 3'UTR 0.46 TCGA-Z2-A8RT-06 1 203055087 203055087 C T MYOG Translation_Start_Site p.M1? 0.43 deleterious(0) possibly_damaging(0.708) TCGA-Z2-A8RT-06 1 203709029 203709029 C T ATP2B4 3'UTR 0.36 TCGA-Z2-A8RT-06 1 204198145 204198145 C T PLEKHA6 Missense_Mutation p.E891K 0.44 deleterious(0.03) benign(0.306) TCGA-Z2-A8RT-06 1 204210507 204210507 G A PLEKHA6 Missense_Mutation p.S802F 0.20 deleterious(0) possibly_damaging(0.474) TCGA-Z2-A8RT-06 1 204951101 204951101 G A NFASC Missense_Mutation p.G808E 0.46 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 205030385 205030385 G A CNTN2 Silent p.R270R 0.24 TCGA-Z2-A8RT-06 1 205119832 205119832 G A DSTYK Missense_Mutation p.H815Y 0.43 deleterious(0) probably_damaging(0.924) TCGA-Z2-A8RT-06 1 205499369 205499369 C T CDK18 Intron 0.38 TCGA-Z2-A8RT-06 1 206239487 206239487 T G C1orf186 Missense_Mutation p.E137D 0.46 tolerated(0.13) benign(0.289) TCGA-Z2-A8RT-06 1 206821567 206821567 C A DYRK3 Missense_Mutation p.L342I 0.36 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 1 207223055 207223055 G A YOD1 Silent p.I119I 0.39 TCGA-Z2-A8RT-06 1 207642003 207642003 A T CR2 Nonsense_Mutation p.K193* 0.42 TCGA-Z2-A8RT-06 1 207648394 207648394 C T CR2 Missense_Mutation p.P850L 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 207851592 207851592 G A CR1L Silent p.V109V 0.38 TCGA-Z2-A8RT-06 1 21014366 21014366 C T KIF17 Missense_Mutation p.E485K 0.38 tolerated_low_confidence(0.08) benign(0.021) TCGA-Z2-A8RT-06 1 21154169 21154169 G A EIF4G3 Missense_Mutation p.P1354S 0.30 tolerated(0.06) probably_damaging(0.994) TCGA-Z2-A8RT-06 1 212860127 212860127 C T BATF3 3'UTR 0.50 TCGA-Z2-A8RT-06 1 212870361 212870361 C T BATF3 Missense_Mutation p.R46Q 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 212965195 212965195 G A TATDN3 5'UTR 0.46 TCGA-Z2-A8RT-06 1 214171536 214171536 C T PROX1 Missense_Mutation p.S553L 0.36 tolerated(0.06) probably_damaging(0.985) TCGA-Z2-A8RT-06 1 214818312 214818312 T A CENPF Nonsense_Mutation p.L1800* 0.45 TCGA-Z2-A8RT-06 1 215847806 215847806 C T USH2A Missense_Mutation p.G4483R 0.35 probably_damaging(0.997) TCGA-Z2-A8RT-06 1 215848238 215848238 C T USH2A Missense_Mutation p.G4339R 0.47 possibly_damaging(0.529) TCGA-Z2-A8RT-06 1 216465664 216465664 C T USH2A Missense_Mutation p.D565N 0.29 possibly_damaging(0.558) TCGA-Z2-A8RT-06 1 216692626 216692626 C T ESRRG Missense_Mutation p.E346K 0.40 deleterious(0.03) benign(0.009) TCGA-Z2-A8RT-06 1 218520029 218520029 C T TGFB2 5'UTR 0.37 TCGA-Z2-A8RT-06 1 22205138 22205138 G A HSPG2 Silent p.F830F 0.31 TCGA-Z2-A8RT-06 1 222716914 222716914 C T HHIPL2 Silent p.R313R 0.40 TCGA-Z2-A8RT-06 1 222922817 222922817 C T FAM177B Silent p.F84F 0.39 TCGA-Z2-A8RT-06 1 222922841 222922841 C T FAM177B Silent p.F92F 0.41 TCGA-Z2-A8RT-06 1 223402693 223402693 G A SUSD4 Silent p.F254F 0.35 TCGA-Z2-A8RT-06 1 2235401 2235401 C T SKI Missense_Mutation p.P445L 0.41 tolerated(0.23) benign(0.003) TCGA-Z2-A8RT-06 1 224340938 224340938 C T FBXO28 Missense_Mutation p.S204F 0.32 deleterious(0) possibly_damaging(0.758) TCGA-Z2-A8RT-06 1 224804831 224804831 C G CNIH3 5'UTR 0.38 TCGA-Z2-A8RT-06 1 226127263 226127263 C T LEFTY2 Missense_Mutation p.D179N 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-Z2-A8RT-06 1 226483646 226483646 G A LIN9 Missense_Mutation p.P70L 0.27 deleterious(0) probably_damaging(0.941) TCGA-Z2-A8RT-06 1 2268213 2268213 G A MORN1 Silent p.L371L 0.53 TCGA-Z2-A8RT-06 1 228003507 228003507 C T PRSS38 Silent p.V30V 0.38 TCGA-Z2-A8RT-06 1 228005157 228005157 G A PRSS38 Missense_Mutation p.G187R 0.38 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 228464890 228464890 G A OBSCN Silent p.T2585T 0.31 TCGA-Z2-A8RT-06 1 228475448 228475448 G A OBSCN Missense_Mutation p.G3629S 0.33 possibly_damaging(0.623) TCGA-Z2-A8RT-06 1 22850724 22850724 C T ZBTB40 Silent p.F1104F 0.52 TCGA-Z2-A8RT-06 1 2289031 2289031 G A MORN1 Silent p.F292F 0.43 TCGA-Z2-A8RT-06 1 229568421 229568421 G A ACTA1 Silent p.L112L 0.44 TCGA-Z2-A8RT-06 1 231042635 231042635 A G TTC13 3'UTR 0.32 TCGA-Z2-A8RT-06 1 232561399 232561399 G A SIPA1L2 Silent p.T1522T 0.25 TCGA-Z2-A8RT-06 1 233152835 233152835 C T PCNXL2 Silent p.L1557L 0.38 TCGA-Z2-A8RT-06 1 233297029 233297029 G A PCNXL2 Silent p.F1118F 0.38 TCGA-Z2-A8RT-06 1 233515127 233515127 C T MLK4 Missense_Mutation p.S792F 0.27 tolerated(0.27) benign(0.004) TCGA-Z2-A8RT-06 1 234454657 234454657 G A SLC35F3 Missense_Mutation p.G372E 0.29 tolerated(0.09) possibly_damaging(0.549) TCGA-Z2-A8RT-06 1 234563403 234563403 C T TARBP1 Missense_Mutation p.G1057E 0.35 tolerated(0.39) benign(0.003) TCGA-Z2-A8RT-06 1 234563404 234563404 C T TARBP1 Missense_Mutation p.G1057R 0.35 tolerated(0.21) benign(0.004) TCGA-Z2-A8RT-06 1 235324494 235324494 C T RBM34 Silent p.Q16Q 0.39 TCGA-Z2-A8RT-06 1 235894172 235894172 C T LYST Missense_Mutation p.D3007N 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-Z2-A8RT-06 1 236646812 236646812 C T EDARADD 3'Flank 0.35 TCGA-Z2-A8RT-06 1 236740202 236740202 G A HEATR1 Missense_Mutation p.R935C 0.42 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 237061033 237061033 C T MTR 3'UTR 0.47 TCGA-Z2-A8RT-06 1 237837490 237837490 C T RYR2 Silent p.F2895F 0.24 TCGA-Z2-A8RT-06 1 238090459 238090459 G A RP11-193H5.1 RNA 0.41 TCGA-Z2-A8RT-06 1 240371642 240371642 C A FMN2 Missense_Mutation p.P1177H 0.44 unknown(0) TCGA-Z2-A8RT-06 1 240421285 240421285 G A FMN2 Missense_Mutation p.G1369E 0.37 probably_damaging(0.997) TCGA-Z2-A8RT-06 1 24201593 24201593 C T CNR2 Nonsense_Mutation p.W172* 0.42 TCGA-Z2-A8RT-06 1 242511442 242511442 C T PLD5 Missense_Mutation p.G98R 0.36 deleterious(0.04) probably_damaging(0.991) TCGA-Z2-A8RT-06 1 2426377 2426377 C T PLCH2 Missense_Mutation p.S554F 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-Z2-A8RT-06 1 24495959 24495959 G A IFNLR1 Silent p.P105P 0.22 TCGA-Z2-A8RT-06 1 24495960 24495960 G A IFNLR1 Missense_Mutation p.P105L 0.22 deleterious(0.04) benign(0.021) TCGA-Z2-A8RT-06 1 247151503 247151503 G A ZNF695 Missense_Mutation p.S105L 0.39 tolerated(0.17) benign(0.007) TCGA-Z2-A8RT-06 1 247588432 247588432 G T NLRP3 Nonsense_Mutation p.E563* 0.36 TCGA-Z2-A8RT-06 1 247614468 247614468 C T OR2B11 Missense_Mutation p.E273K 0.50 deleterious(0.03) possibly_damaging(0.579) TCGA-Z2-A8RT-06 1 247614655 247614655 G A OR2B11 Silent p.F210F 0.29 TCGA-Z2-A8RT-06 1 247695325 247695325 G A OR2C3 Silent p.L163L 0.33 TCGA-Z2-A8RT-06 1 247752337 247752337 C T OR2G2 Missense_Mutation p.H226Y 0.29 deleterious(0.02) benign(0.334) TCGA-Z2-A8RT-06 1 247768910 247768910 C T OR2G3 Missense_Mutation p.S8F 0.33 tolerated(0.26) benign(0.014) TCGA-Z2-A8RT-06 1 247835467 247835467 C T OR13G1 Missense_Mutation p.E293K 0.30 deleterious(0.02) benign(0.005) TCGA-Z2-A8RT-06 1 247875138 247875138 C T OR6F1 Missense_Mutation p.G307E 0.33 tolerated(0.34) benign(0.043) TCGA-Z2-A8RT-06 1 248004380 248004380 G A OR11L1 Silent p.I273I 0.45 TCGA-Z2-A8RT-06 1 248004708 248004708 G A OR11L1 Missense_Mutation p.S164F 0.37 tolerated(0.29) probably_damaging(0.925) TCGA-Z2-A8RT-06 1 248059122 248059122 C T OR2W3 Silent p.I78I 0.42 TCGA-Z2-A8RT-06 1 248059194 248059194 C T OR2W3 Silent p.F102F 0.43 TCGA-Z2-A8RT-06 1 248112197 248112197 T A OR2L8 Nonsense_Mutation p.L13* 0.43 TCGA-Z2-A8RT-06 1 248113035 248113035 G A OR2L8 Silent p.R292R 0.27 TCGA-Z2-A8RT-06 1 248308520 248308520 A C OR2M5 Missense_Mutation p.H24P 0.40 tolerated(0.26) possibly_damaging(0.866) TCGA-Z2-A8RT-06 1 248308935 248308935 G A OR2M5 Silent p.A162A 0.36 TCGA-Z2-A8RT-06 1 248309309 248309309 C T OR2M5 Missense_Mutation p.P287L 0.37 deleterious(0.01) possibly_damaging(0.606) TCGA-Z2-A8RT-06 1 248343296 248343296 G A OR2M2 Nonsense_Mutation p.W3* 0.41 TCGA-Z2-A8RT-06 1 248402523 248402523 G A OR2M4 Missense_Mutation p.G98E 0.44 deleterious(0.04) benign(0.071) TCGA-Z2-A8RT-06 1 248436488 248436488 G A OR2T33 Missense_Mutation p.S210F 0.32 deleterious(0.03) benign(0.232) TCGA-Z2-A8RT-06 1 248436493 248436493 G A OR2T33 Silent p.P208P 0.32 TCGA-Z2-A8RT-06 1 248437081 248437081 G A OR2T33 Silent p.L12L 0.39 TCGA-Z2-A8RT-06 1 248458254 248458254 A T OR2T12 Missense_Mutation p.F209L 0.48 tolerated(0.85) benign(0.002) TCGA-Z2-A8RT-06 1 248487859 248487859 C T OR2M7 Silent p.E4E 0.35 TCGA-Z2-A8RT-06 1 248569509 248569509 G A OR2T1 Missense_Mutation p.E72K 0.42 tolerated(1) benign(0.002) TCGA-Z2-A8RT-06 1 248637056 248637056 C T OR2T3 Silent p.L135L 0.42 TCGA-Z2-A8RT-06 1 248684951 248684951 G A OR2G6 Missense_Mutation p.E2K 0.36 tolerated(0.49) benign(0.002) TCGA-Z2-A8RT-06 1 248737831 248737831 G A OR2T34 Silent p.L76L 0.28 TCGA-Z2-A8RT-06 1 2537738 2537738 G A MMEL1 Silent p.I233I 0.43 TCGA-Z2-A8RT-06 1 25715492 25715492 G A RHCE Missense_Mutation p.S305F 0.32 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 26109077 26109077 C T MAN1C1 Missense_Mutation p.A551V 0.30 deleterious(0) probably_damaging(0.993) TCGA-Z2-A8RT-06 1 26310522 26310522 G A PAFAH2 Missense_Mutation p.P156L 0.34 tolerated(0.3) benign(0.004) TCGA-Z2-A8RT-06 1 26516163 26516163 G A CNKSR1 3'UTR 0.55 TCGA-Z2-A8RT-06 1 26520305 26520305 G A CATSPER4 Missense_Mutation p.D129N 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 26520326 26520326 C T CATSPER4 Missense_Mutation p.L136F 0.35 tolerated(0.27) probably_damaging(0.951) TCGA-Z2-A8RT-06 1 26691687 26691687 G A ZNF683 Missense_Mutation p.S117F 0.32 deleterious(0.02) benign(0.379) TCGA-Z2-A8RT-06 1 27176883 27176883 C T ZDHHC18 Silent p.F246F 0.48 TCGA-Z2-A8RT-06 1 27426811 27426811 G A SLC9A1 Missense_Mutation p.P812L 0.45 deleterious_low_confidence(0) benign(0) TCGA-Z2-A8RT-06 1 27708816 27708816 A T CD164L2 Splice_Site p.X110_splice 0.37 TCGA-Z2-A8RT-06 1 27708817 27708817 C T CD164L2 Splice_Site p.X110_splice 0.36 TCGA-Z2-A8RT-06 1 27940996 27940996 G A FGR Silent p.I398I 0.34 TCGA-Z2-A8RT-06 1 28661262 28661262 C T MED18 Silent p.F136F 0.43 TCGA-Z2-A8RT-06 1 2939042 2939042 C T ACTRT2 Silent p.F264F 0.40 TCGA-Z2-A8RT-06 1 32205558 32205558 G A BAI2 Silent p.F712F 0.43 TCGA-Z2-A8RT-06 1 32672718 32672718 G A IQCC Silent p.K265K 0.38 TCGA-Z2-A8RT-06 1 32672719 32672719 G A IQCC Missense_Mutation p.E266K 0.38 tolerated(0.08) probably_damaging(0.99) TCGA-Z2-A8RT-06 1 3335240 3335240 G A PRDM16 Silent p.G957G 0.37 TCGA-Z2-A8RT-06 1 3389669 3389669 C A ARHGEF16 Missense_Mutation p.H350Q 0.59 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 1 3389670 3389670 A C ARHGEF16 Missense_Mutation p.K351Q 0.57 tolerated(1) benign(0.034) TCGA-Z2-A8RT-06 1 34008457 34008457 C T CSMD2 Missense_Mutation p.R2903Q 0.47 tolerated(1) benign(0.009) TCGA-Z2-A8RT-06 1 34080129 34080129 C T CSMD2 Nonsense_Mutation p.W1996* 0.33 TCGA-Z2-A8RT-06 1 34101997 34101997 C T CSMD2 Silent p.G1604G 0.37 TCGA-Z2-A8RT-06 1 3413827 3413827 G A MEGF6 Missense_Mutation p.P1151S 0.37 deleterious(0.01) possibly_damaging(0.461) TCGA-Z2-A8RT-06 1 34174862 34174862 G A CSMD2 Intron 0.42 TCGA-Z2-A8RT-06 1 34208985 34208985 C T CSMD2 Missense_Mutation p.G650E 0.40 deleterious(0) probably_damaging(0.978) TCGA-Z2-A8RT-06 1 36201924 36201924 G A CLSPN 3'Flank 0.31 TCGA-Z2-A8RT-06 1 36228053 36228053 G A CLSPN Silent p.V258V 0.44 TCGA-Z2-A8RT-06 1 36556897 36556897 C T ADPRHL2 Silent p.S88S 0.22 TCGA-Z2-A8RT-06 1 36640578 36640578 C T MAP7D1 Silent p.S273S 0.39 TCGA-Z2-A8RT-06 1 36935334 36935334 G A CSF3R Silent p.L465L 0.34 TCGA-Z2-A8RT-06 1 38079540 38079540 G A RSPO1 Missense_Mutation p.S154F 0.42 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 1 39549996 39549996 C T MACF1 Missense_Mutation p.P36S 0.41 possibly_damaging(0.772) TCGA-Z2-A8RT-06 1 39812798 39812798 C T MACF1 Intron 0.42 TCGA-Z2-A8RT-06 1 40770032 40770032 A G COL9A2 Missense_Mutation p.I416T 0.50 deleterious(0.04) benign(0.415) TCGA-Z2-A8RT-06 1 40882504 40882504 C T SMAP2 Silent p.F300F 0.39 TCGA-Z2-A8RT-06 1 41283874 41283874 C T KCNQ4 Silent p.I148I 0.35 TCGA-Z2-A8RT-06 1 42628527 42628527 G A GUCA2A 3'UTR 0.32 TCGA-Z2-A8RT-06 1 43032131 43032131 G A CCDC30 Silent p.Q280Q 0.36 TCGA-Z2-A8RT-06 1 43240523 43240523 C T C1orf50 Missense_Mutation p.S133F 0.30 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 43241041 43241041 C T C1orf50 Silent p.P192P 0.39 TCGA-Z2-A8RT-06 1 43774696 43774696 A T TIE1 Missense_Mutation p.E361V 0.36 deleterious(0.02) possibly_damaging(0.685) TCGA-Z2-A8RT-06 1 43905670 43905670 C T SZT2 Silent p.I2330I 0.43 TCGA-Z2-A8RT-06 1 44131378 44131378 C T KDM4A Missense_Mutation p.P212L 0.37 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 1 44422586 44422586 C T IPO13 Silent p.F403F 0.34 TCGA-Z2-A8RT-06 1 44804814 44804814 G A ERI3 Missense_Mutation p.S131F 0.39 deleterious(0.02) benign(0.122) TCGA-Z2-A8RT-06 1 45250412 45250412 G A BEST4 Missense_Mutation p.P346L 0.30 tolerated(0.17) benign(0.059) TCGA-Z2-A8RT-06 1 46812712 46812712 G A NSUN4 Missense_Mutation p.G186E 0.37 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 1 46871422 46871422 C A FAAH Silent p.S247S 0.31 TCGA-Z2-A8RT-06 1 47333644 47333644 G A CYP4Z2P RNA 0.23 TCGA-Z2-A8RT-06 1 47333645 47333645 G A CYP4Z2P RNA 0.23 TCGA-Z2-A8RT-06 1 47406953 47406953 G A CYP4A11 Silent p.F51F 0.40 TCGA-Z2-A8RT-06 1 47564916 47564916 G A CYP4Z1 Missense_Mutation p.E343K 0.41 deleterious(0) possibly_damaging(0.874) TCGA-Z2-A8RT-06 1 47611819 47611819 G A CYP4A22 Missense_Mutation p.G453E 0.37 deleterious(0.01) possibly_damaging(0.905) TCGA-Z2-A8RT-06 1 47685613 47685613 C T TAL1 Missense_Mutation p.D259N 0.46 deleterious(0) benign(0.154) TCGA-Z2-A8RT-06 1 47689701 47689701 G A TAL1 Silent p.S172S 0.28 TCGA-Z2-A8RT-06 1 53675977 53675977 C T CPT2 Missense_Mutation p.P211S 0.59 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 1 55134604 55134604 G A MROH7 Silent p.K461K 0.65 TCGA-Z2-A8RT-06 1 55224238 55224238 G A PARS2 Silent p.L199L 0.68 TCGA-Z2-A8RT-06 1 55266738 55266738 G A TTC22 Silent p.F33F 0.77 TCGA-Z2-A8RT-06 1 55529271 55529271 G A PCSK9 3'UTR 0.72 TCGA-Z2-A8RT-06 1 55599829 55599829 G A USP24 Silent p.L1099L 0.50 TCGA-Z2-A8RT-06 1 59248210 59248210 G A JUN Missense_Mutation p.P178L 0.86 deleterious(0.01) possibly_damaging(0.876) TCGA-Z2-A8RT-06 1 6206819 6206819 G A CHD5 Missense_Mutation p.P499L 0.28 tolerated(0.08) benign(0.013) TCGA-Z2-A8RT-06 1 6209356 6209356 C T CHD5 Missense_Mutation p.D371N 0.33 tolerated(0.06) probably_damaging(0.969) TCGA-Z2-A8RT-06 1 63836728 63836728 C T ALG6 Missense_Mutation p.S27L 0.40 deleterious(0.02) benign(0.422) TCGA-Z2-A8RT-06 1 63999814 63999814 C T EFCAB7 Missense_Mutation p.S244F 0.68 deleterious(0) probably_damaging(0.971) TCGA-Z2-A8RT-06 1 65684595 65684595 C T AK4 Missense_Mutation p.P142S 0.64 deleterious(0.01) possibly_damaging(0.891) TCGA-Z2-A8RT-06 1 6631171 6631171 G A TAS1R1 Missense_Mutation p.D132N 0.46 tolerated(1) benign(0.03) TCGA-Z2-A8RT-06 1 67685297 67685297 C T IL23R Missense_Mutation p.S280L 0.69 tolerated(0.15) benign(0.007) TCGA-Z2-A8RT-06 1 74663826 74663826 C T LRRIQ3 5'UTR 0.67 TCGA-Z2-A8RT-06 1 75086533 75086533 C T C1orf173 Silent p.G295G 0.63 TCGA-Z2-A8RT-06 1 75693422 75693422 C T SLC44A5 Nonsense_Mutation p.W325* 0.52 TCGA-Z2-A8RT-06 1 77528743 77528743 G A ST6GALNAC5 Missense_Mutation p.R288Q 0.65 possibly_damaging(0.577) TCGA-Z2-A8RT-06 1 78338800 78338800 T A FAM73A Missense_Mutation p.F559I 0.62 deleterious(0) possibly_damaging(0.736) TCGA-Z2-A8RT-06 1 7887420 7887420 C T PER3 Missense_Mutation p.P803S 0.42 tolerated(0.13) possibly_damaging(0.857) TCGA-Z2-A8RT-06 1 79002133 79002133 G A PTGFR Missense_Mutation p.E281K 0.60 tolerated(0.84) benign(0.009) TCGA-Z2-A8RT-06 1 79403622 79403622 C T ELTD1 Nonsense_Mutation p.W210* 0.70 TCGA-Z2-A8RT-06 1 8384565 8384565 C T SLC45A1 Missense_Mutation p.S59F 0.56 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 1 8384594 8384594 C T SLC45A1 Missense_Mutation p.P69S 0.60 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-Z2-A8RT-06 1 86283740 86283740 G A COL24A1 Missense_Mutation p.P1274S 0.76 tolerated(0.34) benign(0.345) TCGA-Z2-A8RT-06 1 86453337 86453337 C T COL24A1 Missense_Mutation p.G771S 0.69 deleterious(0) probably_damaging(0.993) TCGA-Z2-A8RT-06 1 86954712 86954712 G A CLCA1 Missense_Mutation p.E406K 0.58 deleterious(0.01) probably_damaging(0.963) TCGA-Z2-A8RT-06 1 881579 881579 G A NOC2L Nonsense_Mutation p.Q631* 0.43 TCGA-Z2-A8RT-06 1 94140239 94140239 G A BCAR3 Missense_Mutation p.S83L 0.40 deleterious(0.04) benign(0.003) TCGA-Z2-A8RT-06 1 94370141 94370141 G A GCLM Missense_Mutation p.H44Y 0.34 tolerated(1) benign(0) TCGA-Z2-A8RT-06 1 94508917 94508917 C T ABCA4 Silent p.R1055R 0.33 TCGA-Z2-A8RT-06 1 94544930 94544930 C T ABCA4 Missense_Mutation p.G396E 0.39 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 1 94639780 94639780 G A ARHGAP29 Missense_Mutation p.S1144L 0.38 tolerated(0.1) benign(0.009) TCGA-Z2-A8RT-06 1 94652141 94652141 C T ARHGAP29 Missense_Mutation p.R565Q 0.36 tolerated(0.06) benign(0.116) TCGA-Z2-A8RT-06 1 94668656 94668656 C G ARHGAP29 Missense_Mutation p.Q291H 0.32 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 1 97544528 97544528 C T DPYD 3'UTR 0.40 TCGA-Z2-A8RT-06 1 98187196 98187196 G A DPYD Missense_Mutation p.S118F 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 20 10393450 10393450 G A MKKS Missense_Mutation p.A238V 0.40 tolerated(0.36) benign(0.008) TCGA-Z2-A8RT-06 20 123290 123290 C T DEFB126 Silent p.T7T 0.35 TCGA-Z2-A8RT-06 20 13090829 13090829 G A SPTLC3 Nonsense_Mutation p.W299* 0.44 TCGA-Z2-A8RT-06 20 138189 138189 G A DEFB127 Missense_Mutation p.G2R 0.40 tolerated(0.67) benign(0) TCGA-Z2-A8RT-06 20 1456672 1456672 G A SIRPB2 3'UTR 0.54 TCGA-Z2-A8RT-06 20 16253818 16253818 C T KIF16B 3'UTR 0.43 TCGA-Z2-A8RT-06 20 17462533 17462533 C T PCSK2 Missense_Mutation p.P579S 0.44 tolerated(0.43) benign(0.036) TCGA-Z2-A8RT-06 20 17602182 17602182 G A RRBP1 Missense_Mutation p.S679F 0.36 tolerated(0.7) possibly_damaging(0.683) TCGA-Z2-A8RT-06 20 18125819 18125819 C T CSRP2BP Intron 0.30 TCGA-Z2-A8RT-06 20 18435950 18435950 G A DZANK1 Missense_Mutation p.P107S 0.44 deleterious(0.03) possibly_damaging(0.901) TCGA-Z2-A8RT-06 20 18523015 18523015 A G SEC23B Missense_Mutation p.R494G 0.34 tolerated(0.28) benign(0.143) TCGA-Z2-A8RT-06 20 19701833 19701833 G A SLC24A3 3'UTR 0.41 TCGA-Z2-A8RT-06 20 20036652 20036652 C T CRNKL1 Missense_Mutation p.A3T 0.35 tolerated_low_confidence(0.06) benign(0.001) TCGA-Z2-A8RT-06 20 20177407 20177407 C T C20orf26 Missense_Mutation p.S595F 0.49 tolerated(0.53) benign(0.006) TCGA-Z2-A8RT-06 20 20505101 20505101 G A RALGAPA2 Silent p.V1283V 0.40 TCGA-Z2-A8RT-06 20 23584287 23584287 G A CST9 Missense_Mutation p.P114S 0.37 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 20 2444456 2444456 G A SNRPB Silent p.P119P 0.38 TCGA-Z2-A8RT-06 20 2465272 2465272 G A ZNF343 Missense_Mutation p.S112F 0.42 tolerated(0.28) possibly_damaging(0.521) TCGA-Z2-A8RT-06 20 24954292 24954292 G A APMAP Missense_Mutation p.S137L 0.36 tolerated(0.19) benign(0.004) TCGA-Z2-A8RT-06 20 2592976 2592976 C T TMC2 Missense_Mutation p.A578V 0.40 tolerated(0.3) possibly_damaging(0.61) TCGA-Z2-A8RT-06 20 2776682 2776682 G A CPXM1 Silent p.I456I 0.35 TCGA-Z2-A8RT-06 20 2778899 2778899 C T CPXM1 Nonsense_Mutation p.W163* 0.36 TCGA-Z2-A8RT-06 20 31627188 31627188 G A BPIFB6 Silent p.T312T 0.39 TCGA-Z2-A8RT-06 20 31897639 31897639 G A BPIFB1 3'UTR 0.32 TCGA-Z2-A8RT-06 20 3209898 3209898 G A SLC4A11 Missense_Mutation p.R664C 0.30 deleterious(0.01) possibly_damaging(0.886) TCGA-Z2-A8RT-06 20 3209899 3209899 G A SLC4A11 Silent p.F663F 0.29 TCGA-Z2-A8RT-06 20 3211214 3211214 G A SLC4A11 Silent p.F497F 0.42 TCGA-Z2-A8RT-06 20 33345563 33345563 G A NCOA6 Missense_Mutation p.P330S 0.39 probably_damaging(0.998) TCGA-Z2-A8RT-06 20 334179 334179 C T NRSN2 Missense_Mutation p.P172L 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 20 33586207 33586207 G A MYH7B Missense_Mutation p.R1328Q 0.39 possibly_damaging(0.7) TCGA-Z2-A8RT-06 20 33874911 33874911 G A FAM83C Silent p.L557L 0.44 TCGA-Z2-A8RT-06 20 33875142 33875142 C T FAM83C Silent p.R480R 0.37 TCGA-Z2-A8RT-06 20 34021956 34021956 G A GDF5 Silent p.I419I 0.45 TCGA-Z2-A8RT-06 20 34022259 34022259 C T GDF5 Silent p.R318R 0.42 TCGA-Z2-A8RT-06 20 34505530 34505530 C T PHF20 Silent p.F650F 0.34 TCGA-Z2-A8RT-06 20 35443584 35443584 G A SOGA1 Missense_Mutation p.S754F 0.37 deleterious(0) possibly_damaging(0.891) TCGA-Z2-A8RT-06 20 35738689 35738689 G A MROH8 Missense_Mutation p.P989S 0.37 tolerated(0.9) benign(0.033) TCGA-Z2-A8RT-06 20 36869404 36869404 G A KIAA1755 Missense_Mutation p.L377F 0.41 tolerated(0.07) benign(0.048) TCGA-Z2-A8RT-06 20 36869688 36869688 G A KIAA1755 Missense_Mutation p.S282F 0.38 deleterious(0) possibly_damaging(0.502) TCGA-Z2-A8RT-06 20 36869920 36869920 G A KIAA1755 Missense_Mutation p.P205S 0.35 tolerated(0.13) benign(0.101) TCGA-Z2-A8RT-06 20 36874373 36874373 G A KIAA1755 Silent p.I53I 0.30 TCGA-Z2-A8RT-06 20 36995450 36995450 C T LBP Missense_Mutation p.S320F 0.41 tolerated(0.19) probably_damaging(0.991) TCGA-Z2-A8RT-06 20 37187041 37187041 C T RALGAPB Missense_Mutation p.P1159L 0.32 deleterious(0.05) benign(0.318) TCGA-Z2-A8RT-06 20 37536693 37536693 C T PPP1R16B Silent p.L351L 0.45 TCGA-Z2-A8RT-06 20 40161772 40161772 G A CHD6 Silent p.P157P 0.45 TCGA-Z2-A8RT-06 20 40790129 40790129 G A PTPRT Missense_Mutation p.P849S 0.40 tolerated(0.14) probably_damaging(0.996) TCGA-Z2-A8RT-06 20 42089621 42089621 C T SRSF6 Missense_Mutation p.P318L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 20 42233700 42233700 G A IFT52 Missense_Mutation p.G158R 0.36 tolerated(0.15) benign(0.096) TCGA-Z2-A8RT-06 20 42233701 42233701 G A IFT52 Missense_Mutation p.G158E 0.36 tolerated(0.3) benign(0.01) TCGA-Z2-A8RT-06 20 42344847 42344847 C T MYBL2 3'UTR 0.35 TCGA-Z2-A8RT-06 20 42602043 42602043 G A TOX2 Missense_Mutation p.G46R 0.42 tolerated(0.05) benign(0.046) TCGA-Z2-A8RT-06 20 43057123 43057123 G A HNF4A Silent p.Q426Q 0.36 TCGA-Z2-A8RT-06 20 43850033 43850033 G A SEMG2 Translation_Start_Site p.M1? 0.47 deleterious(0) unknown(0) TCGA-Z2-A8RT-06 20 43850991 43850991 C T SEMG2 Missense_Mutation p.P240S 0.40 tolerated(0.72) probably_damaging(0.998) TCGA-Z2-A8RT-06 20 43944845 43944845 G A RBPJL Missense_Mutation p.E347K 0.38 deleterious(0.01) possibly_damaging(0.676) TCGA-Z2-A8RT-06 20 44108360 44108360 C T WFDC2 Intron 0.48 TCGA-Z2-A8RT-06 20 44352613 44352613 C T SPINT4 Silent p.V70V 0.37 TCGA-Z2-A8RT-06 20 44422590 44422590 C T DNTTIP1 Silent p.L69L 0.45 TCGA-Z2-A8RT-06 20 44507010 44507010 C T ZSWIM3 Missense_Mutation p.P605S 0.45 tolerated(0.45) possibly_damaging(0.677) TCGA-Z2-A8RT-06 20 46271042 46271042 C T NCOA3 Nonsense_Mutation p.Q1056* 0.45 TCGA-Z2-A8RT-06 20 46307536 46307536 G A SULF2 Silent p.I359I 0.38 TCGA-Z2-A8RT-06 20 4705197 4705197 G A PRND 5'UTR 0.30 TCGA-Z2-A8RT-06 20 47273612 47273612 G A PREX1 Missense_Mutation p.P697S 0.29 tolerated(0.27) benign(0.006) TCGA-Z2-A8RT-06 20 47704569 47704569 C T CSE1L Silent p.L583L 0.30 TCGA-Z2-A8RT-06 20 48164448 48164448 G A PTGIS Missense_Mutation p.L103F 0.36 deleterious(0) possibly_damaging(0.852) TCGA-Z2-A8RT-06 20 48600622 48600622 C T SNAI1 Missense_Mutation p.S115F 0.32 tolerated(0.51) benign(0.018) TCGA-Z2-A8RT-06 20 49212031 49212031 G T FAM65C Missense_Mutation p.S638Y 0.35 tolerated(0.09) possibly_damaging(0.583) TCGA-Z2-A8RT-06 20 49626297 49626297 G A KCNG1 Silent p.G193G 0.41 TCGA-Z2-A8RT-06 20 50226694 50226694 G A ATP9A Missense_Mutation p.S861F 0.38 deleterious(0) probably_damaging(0.966) TCGA-Z2-A8RT-06 20 50346378 50346378 G A ATP9A Missense_Mutation p.P70S 0.43 deleterious(0) possibly_damaging(0.633) TCGA-Z2-A8RT-06 20 50406884 50406884 G A SALL4 Missense_Mutation p.P713L 0.43 tolerated(0.49) benign(0.054) TCGA-Z2-A8RT-06 20 51870774 51870774 G A TSHZ2 Silent p.R259R 0.32 TCGA-Z2-A8RT-06 20 51871402 51871402 C T TSHZ2 Missense_Mutation p.P469S 0.41 tolerated(0.63) benign(0.003) TCGA-Z2-A8RT-06 20 51872856 51872856 G A TSHZ2 Missense_Mutation p.M953I 0.43 tolerated(0.35) benign(0.245) TCGA-Z2-A8RT-06 20 52830949 52830949 G A PFDN4 Silent p.R28R 0.32 TCGA-Z2-A8RT-06 20 55108414 55108414 C T FAM209B Missense_Mutation p.S6L 0.39 tolerated(0.32) benign(0.018) TCGA-Z2-A8RT-06 20 56089674 56089674 G A CTCFL Missense_Mutation p.T435I 0.41 deleterious(0.02) possibly_damaging(0.853) TCGA-Z2-A8RT-06 20 56140895 56140895 C T PCK1 3'UTR 0.29 TCGA-Z2-A8RT-06 20 57290269 57290269 T A NPEPL1 Missense_Mutation p.F487I 0.41 deleterious(0.01) probably_damaging(0.945) TCGA-Z2-A8RT-06 20 57766425 57766425 C T ZNF831 Silent p.I117I 0.39 TCGA-Z2-A8RT-06 20 57769093 57769093 G A ZNF831 Missense_Mutation p.D1007N 0.34 tolerated(0.15) benign(0.397) TCGA-Z2-A8RT-06 20 58562674 58562674 G A CDH26 Missense_Mutation p.G335E 0.42 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 20 60485484 60485484 G A CDH4 Missense_Mutation p.G399R 0.37 deleterious(0) probably_damaging(0.971) TCGA-Z2-A8RT-06 20 60485487 60485487 G A CDH4 Missense_Mutation p.E400K 0.31 tolerated(0.06) benign(0.369) TCGA-Z2-A8RT-06 20 6090953 6090953 G A FERMT1 Silent p.L246L 0.47 TCGA-Z2-A8RT-06 20 60911492 60911492 G A LAMA5 Missense_Mutation p.P743S 0.42 benign(0.137) TCGA-Z2-A8RT-06 20 61468560 61468560 C T COL9A3 Nonsense_Mutation p.R577* 0.35 TCGA-Z2-A8RT-06 20 61950546 61950546 C T COL20A1 Silent p.L934L 0.45 TCGA-Z2-A8RT-06 20 62321162 62321162 C T RTEL1 Silent p.I719I 0.33 TCGA-Z2-A8RT-06 20 62730081 62730081 C T OPRL1 Missense_Mutation p.R348C 0.34 deleterious(0.02) benign(0.025) TCGA-Z2-A8RT-06 20 62904865 62904865 C A PCMTD2 Missense_Mutation p.P333H 0.37 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-Z2-A8RT-06 20 6759050 6759050 C T BMP2 Missense_Mutation p.H169Y 0.38 tolerated(0.05) probably_damaging(0.954) TCGA-Z2-A8RT-06 20 76837 76837 G A DEFB125 Missense_Mutation p.D84N 0.33 tolerated(0.3) benign(0.141) TCGA-Z2-A8RT-06 20 853687 853687 C T ANGPT4 Missense_Mutation p.M476I 0.39 tolerated(0.11) benign(0.004) TCGA-Z2-A8RT-06 20 8708000 8708000 G T PLCB1 Nonsense_Mutation p.G575* 0.34 TCGA-Z2-A8RT-06 20 8737750 8737750 G A PLCB1 Missense_Mutation p.E861K 0.36 tolerated(0.38) benign(0.028) TCGA-Z2-A8RT-06 20 9404511 9404511 C T PLCB4 Silent p.S800S 0.32 TCGA-Z2-A8RT-06 20 9496722 9496722 G A LAMP5 Missense_Mutation p.E105K 0.46 tolerated(0.28) probably_damaging(0.958) TCGA-Z2-A8RT-06 20 9520098 9520098 G A PAK7 3'UTR 0.47 TCGA-Z2-A8RT-06 20 9561144 9561144 C T PAK7 Missense_Mutation p.S213N 0.40 tolerated_low_confidence(0.44) benign(0.057) TCGA-Z2-A8RT-06 21 10998255 10998255 C A TPTE RNA 0.17 TCGA-Z2-A8RT-06 21 10998256 10998256 C T TPTE RNA 0.17 TCGA-Z2-A8RT-06 21 11039058 11039058 C T BAGE2 RNA 0.05 TCGA-Z2-A8RT-06 21 11058273 11058273 C T BAGE2 RNA 0.07 TCGA-Z2-A8RT-06 21 14417516 14417516 G A RNU6-614P 5'Flank 0.16 TCGA-Z2-A8RT-06 21 15352121 15352121 C T ANKRD20A11P RNA 0.53 TCGA-Z2-A8RT-06 21 15516283 15516283 A T LIPI Intron 0.26 TCGA-Z2-A8RT-06 21 18937853 18937853 C T CXADR Missense_Mutation p.S314F 0.31 deleterious(0.01) possibly_damaging(0.602) TCGA-Z2-A8RT-06 21 19653444 19653444 C T TMPRSS15 Missense_Mutation p.E861K 0.38 deleterious(0.03) benign(0.016) TCGA-Z2-A8RT-06 21 27326996 27326996 G A APP Missense_Mutation p.T532I 0.45 deleterious(0) probably_damaging(0.943) TCGA-Z2-A8RT-06 21 27354710 27354710 A C APP Missense_Mutation p.F391V 0.27 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 21 27945294 27945294 G A CYYR1 5'UTR 0.55 TCGA-Z2-A8RT-06 21 30961275 30961275 C T GRIK1 Missense_Mutation p.E485K 0.42 tolerated(0.07) possibly_damaging(0.843) TCGA-Z2-A8RT-06 21 31654729 31654729 C T KRTAP24-1 Silent p.G174G 0.34 TCGA-Z2-A8RT-06 21 31802986 31802986 C T KRTAP13-4 Silent p.F131F 0.35 TCGA-Z2-A8RT-06 21 31869202 31869202 C A KRTAP19-4 Missense_Mutation p.R76I 0.41 deleterious_low_confidence(0) unknown(0) TCGA-Z2-A8RT-06 21 31869240 31869240 C T KRTAP19-4 Silent p.L63L 0.46 TCGA-Z2-A8RT-06 21 31965152 31965152 C T KRTAP6-3 3'UTR 0.56 TCGA-Z2-A8RT-06 21 32537307 32537307 G A TIAM1 Missense_Mutation p.S988F 0.41 tolerated(0.06) benign(0.058) TCGA-Z2-A8RT-06 21 33371201 33371201 C T HUNK Missense_Mutation p.P617S 0.33 tolerated_low_confidence(0.3) benign(0.003) TCGA-Z2-A8RT-06 21 34924393 34924393 C T SON Silent p.G952G 0.38 TCGA-Z2-A8RT-06 21 34927651 34927651 C T SON Silent p.S2038S 0.36 TCGA-Z2-A8RT-06 21 35140024 35140024 C T ITSN1 Nonsense_Mutation p.R312* 0.31 TCGA-Z2-A8RT-06 21 37618372 37618372 C T DOPEY2 Missense_Mutation p.S1365F 0.36 deleterious(0.01) benign(0.221) TCGA-Z2-A8RT-06 21 37721656 37721656 C T MORC3 Silent p.F351F 0.37 TCGA-Z2-A8RT-06 21 39087178 39087178 C T KCNJ6 Silent p.L94L 0.26 TCGA-Z2-A8RT-06 21 39212999 39212999 C T KCNJ6 5'UTR 0.41 TCGA-Z2-A8RT-06 21 41143109 41143109 A G IGSF5 Missense_Mutation p.T229A 0.44 tolerated(0.11) benign(0.336) TCGA-Z2-A8RT-06 21 41385279 41385279 C T DSCAM Missense_Mutation p.M1907I 0.34 tolerated_low_confidence(0.12) benign(0.054) TCGA-Z2-A8RT-06 21 41427656 41427656 G A DSCAM Silent p.T1677T 0.45 TCGA-Z2-A8RT-06 21 41539175 41539175 T A DSCAM Silent p.I996I 0.35 TCGA-Z2-A8RT-06 21 41559123 41559123 C T DSCAM Nonsense_Mutation p.W905* 0.33 TCGA-Z2-A8RT-06 21 41711281 41711281 A T DSCAM Silent p.V424V 0.35 TCGA-Z2-A8RT-06 21 42080539 42080539 C T DSCAM Missense_Mutation p.D68N 0.43 tolerated(0.18) benign(0.258) TCGA-Z2-A8RT-06 21 42719017 42719017 G A FAM3B Missense_Mutation p.G159R 0.33 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 21 43524107 43524107 C T UMODL1 Missense_Mutation p.P477S 0.36 tolerated(0.09) possibly_damaging(0.56) TCGA-Z2-A8RT-06 21 43802054 43802054 G A TMPRSS3 Intron 0.79 TCGA-Z2-A8RT-06 21 44108041 44108041 C T PDE9A Missense_Mutation p.S52F 0.41 tolerated(0.06) possibly_damaging(0.825) TCGA-Z2-A8RT-06 21 44323719 44323719 C T NDUFV3 Silent p.P199P 0.42 TCGA-Z2-A8RT-06 21 44324160 44324160 C T NDUFV3 Silent p.A346A 0.37 TCGA-Z2-A8RT-06 21 44324161 44324161 C T NDUFV3 Missense_Mutation p.P347S 0.38 tolerated(0.52) benign(0.006) TCGA-Z2-A8RT-06 21 44589297 44589297 G A CRYAA Missense_Mutation p.G30S 0.48 tolerated(0.25) probably_damaging(0.934) TCGA-Z2-A8RT-06 21 45104517 45104517 C T RRP1B Silent p.S325S 0.41 TCGA-Z2-A8RT-06 21 45670750 45670750 G A DNMT3L Silent p.F284F 0.37 TCGA-Z2-A8RT-06 21 45708313 45708313 G A AIRE Silent p.G208G 0.39 TCGA-Z2-A8RT-06 21 45845680 45845680 C T TRPM2 Silent p.F1255F 0.41 TCGA-Z2-A8RT-06 21 45861664 45861664 C T TRPM2 Silent p.L1492L 0.28 TCGA-Z2-A8RT-06 21 45877313 45877313 G A LRRC3 3'UTR 0.47 TCGA-Z2-A8RT-06 21 45970647 45970647 G A KRTAP10-2 Missense_Mutation p.S232F 0.34 deleterious(0) unknown(0) TCGA-Z2-A8RT-06 21 46000368 46000368 G A KRTAP10-5 Missense_Mutation p.P30S 0.41 tolerated(0.23) unknown(0) TCGA-Z2-A8RT-06 21 46101971 46101971 G A KRTAP12-1 Missense_Mutation p.S23F 0.34 deleterious(0) possibly_damaging(0.788) TCGA-Z2-A8RT-06 21 46596042 46596042 C T ADARB1 Silent p.F142F 0.44 TCGA-Z2-A8RT-06 21 46685341 46685341 G A POFUT2 3'UTR 0.45 TCGA-Z2-A8RT-06 21 47320922 47320922 G A PCBP3 Silent p.R78R 0.37 TCGA-Z2-A8RT-06 21 47537822 47537822 C T COL6A2 Missense_Mutation p.P363L 0.52 tolerated(0.25) possibly_damaging(0.688) TCGA-Z2-A8RT-06 21 47966991 47966991 T A DIP2A Intron 0.32 TCGA-Z2-A8RT-06 22 17071732 17071732 C T CCT8L2 3'UTR 0.40 TCGA-Z2-A8RT-06 22 17072666 17072666 C T CCT8L2 Missense_Mutation p.A259T 0.38 tolerated(0.1) possibly_damaging(0.666) TCGA-Z2-A8RT-06 22 17288798 17288798 C T XKR3 Missense_Mutation p.E56K 0.40 tolerated(0.54) benign(0.089) TCGA-Z2-A8RT-06 22 17468960 17468960 G A GAB4 Silent p.P192P 0.28 TCGA-Z2-A8RT-06 22 17688080 17688080 C T CECR1 Silent p.R141R 0.43 TCGA-Z2-A8RT-06 22 19209118 19209118 G A CLTCL1 Missense_Mutation p.P860S 0.18 deleterious(0.05) benign(0.056) TCGA-Z2-A8RT-06 22 20074180 20074180 G A DGCR8 Missense_Mutation p.E232K 0.33 deleterious(0.02) benign(0.126) TCGA-Z2-A8RT-06 22 20131118 20131118 C T ZDHHC8 Silent p.A655A 0.48 TCGA-Z2-A8RT-06 22 20760021 20760021 C T ZNF74 Missense_Mutation p.P233L 0.36 tolerated(0.38) benign(0.086) TCGA-Z2-A8RT-06 22 21349282 21349282 C T LZTR1 Missense_Mutation p.P637S 0.40 tolerated(0.77) benign(0.001) TCGA-Z2-A8RT-06 22 22312991 22312991 G A TOP3B Silent p.L660L 0.32 TCGA-Z2-A8RT-06 22 22664603 22664603 T C BMS1P20 RNA 0.07 TCGA-Z2-A8RT-06 22 22712438 22712438 G A IGLV1-47 Missense_Mutation p.G61R 0.35 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-Z2-A8RT-06 22 23011167 23011167 C T IGLV3-27 Missense_Mutation p.P77L 0.44 deleterious(0.01) benign(0.154) TCGA-Z2-A8RT-06 22 23165325 23165325 C T IGLV2-8 Missense_Mutation p.A4V 0.58 deleterious_low_confidence(0.02) benign(0.141) TCGA-Z2-A8RT-06 22 23237976 23237976 C T IGLL5 3'UTR 0.37 TCGA-Z2-A8RT-06 22 23248752 23248752 C T IGLC3 Missense_Mutation p.S81F 0.32 possibly_damaging(0.725) TCGA-Z2-A8RT-06 22 23265038 23265038 G A IGLC7 Missense_Mutation p.E92K 0.33 deleterious_low_confidence(0) benign(0.041) TCGA-Z2-A8RT-06 22 23657791 23657791 C T BCR 3'UTR 0.50 TCGA-Z2-A8RT-06 22 24121559 24121559 C T MMP11 Silent p.F98F 0.50 TCGA-Z2-A8RT-06 22 24579590 24579590 C T SUSD2 Missense_Mutation p.P139S 0.38 tolerated(0.28) benign(0.04) TCGA-Z2-A8RT-06 22 24581994 24581994 C T SUSD2 Silent p.F450F 0.33 TCGA-Z2-A8RT-06 22 24622226 24622226 G A GGT5 Silent p.S349S 0.38 TCGA-Z2-A8RT-06 22 25255777 25255777 G A SGSM1 Missense_Mutation p.G299E 0.33 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 22 25750744 25750744 G A LRP5L Silent p.L158L 0.44 TCGA-Z2-A8RT-06 22 25756177 25756177 G A LRP5L 5'UTR 0.21 TCGA-Z2-A8RT-06 22 26343747 26343747 G A MYO18B Missense_Mutation p.D1901N 0.30 deleterious(0) possibly_damaging(0.521) TCGA-Z2-A8RT-06 22 26422657 26422657 G A MYO18B Silent p.S2239S 0.37 TCGA-Z2-A8RT-06 22 26423559 26423559 G A MYO18B Missense_Mutation p.R2540Q 0.46 tolerated(0.44) benign(0.013) TCGA-Z2-A8RT-06 22 26771633 26771633 G A SEZ6L Missense_Mutation p.G974R 0.44 deleterious(0) probably_damaging(0.931) TCGA-Z2-A8RT-06 22 28193419 28193419 G A MN1 Missense_Mutation p.S1038L 0.31 probably_damaging(0.998) TCGA-Z2-A8RT-06 22 29121017 29121017 G A CHEK2 Silent p.R223R 0.39 TCGA-Z2-A8RT-06 22 29628273 29628273 C T EMID1 Silent p.G235G 0.44 TCGA-Z2-A8RT-06 22 29886231 29886231 G A NEFH Missense_Mutation p.E868K 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-Z2-A8RT-06 22 30038261 30038261 C T NF2 Missense_Mutation p.A145V 0.38 deleterious(0.04) probably_damaging(0.922) TCGA-Z2-A8RT-06 22 30639820 30639820 G A LIF Silent p.I143I 0.38 TCGA-Z2-A8RT-06 22 30886064 30886064 G A SEC14L4 3'UTR 0.23 TCGA-Z2-A8RT-06 22 31331067 31331067 A T MORC2 Missense_Mutation p.L570M 0.33 tolerated(0.29) benign(0.005) TCGA-Z2-A8RT-06 22 31533917 31533917 G A PLA2G3 Missense_Mutation p.S282F 0.37 deleterious(0) possibly_damaging(0.534) TCGA-Z2-A8RT-06 22 31669471 31669471 C T LIMK2 Missense_Mutation p.S510F 0.44 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 22 32289578 32289578 C T DEPDC5 Silent p.V1339V 0.36 TCGA-Z2-A8RT-06 22 32546458 32546458 C T C22orf42 Missense_Mutation p.E168K 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.502) TCGA-Z2-A8RT-06 22 32756842 32756842 G A RFPL3 3'UTR 0.39 TCGA-Z2-A8RT-06 22 35802655 35802655 C T MCM5 Missense_Mutation p.T178I 0.50 tolerated(0.09) benign(0.003) TCGA-Z2-A8RT-06 22 36595380 36595380 G A APOL4 Silent p.F29F 0.32 TCGA-Z2-A8RT-06 22 36661606 36661606 G A APOL1 Missense_Mutation p.D258N 0.47 tolerated(0.57) benign(0.003) TCGA-Z2-A8RT-06 22 37271862 37271862 C T NCF4 Silent p.F265F 0.46 TCGA-Z2-A8RT-06 22 37319396 37319396 C T CSF2RB Missense_Mutation p.R63C 0.45 deleterious(0) probably_damaging(0.931) TCGA-Z2-A8RT-06 22 37524210 37524210 G A IL2RB Missense_Mutation p.R528C 0.46 tolerated(0.19) benign(0.003) TCGA-Z2-A8RT-06 22 38948707 38948707 G A DMC1 Missense_Mutation p.R129C 0.44 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 22 39448671 39448671 G A APOBEC3F Missense_Mutation p.D365N 0.43 tolerated(0.11) benign(0.139) TCGA-Z2-A8RT-06 22 40068210 40068210 G A CACNA1I Missense_Mutation p.E1516K 0.34 deleterious(0.03) benign(0.403) TCGA-Z2-A8RT-06 22 41256980 41256980 T C DNAJB7 3'UTR 0.42 TCGA-Z2-A8RT-06 22 41546164 41546164 C T EP300 Missense_Mutation p.P927S 0.35 unknown(0) TCGA-Z2-A8RT-06 22 41645342 41645342 G A RANGAP1 Silent p.F562F 0.34 TCGA-Z2-A8RT-06 22 41973278 41973278 G A CSDC2 3'Flank 0.36 TCGA-Z2-A8RT-06 22 42267015 42267015 C T SREBF2 Silent p.I281I 0.32 TCGA-Z2-A8RT-06 22 43619189 43619189 G A SCUBE1 Missense_Mutation p.S414F 0.40 tolerated(0.08) benign(0.001) TCGA-Z2-A8RT-06 22 44527413 44527413 C T PARVB Silent p.S174S 0.38 TCGA-Z2-A8RT-06 22 44581695 44581695 G A PARVG Silent p.K29K 0.39 TCGA-Z2-A8RT-06 22 44586444 44586444 G A PARVG Silent p.K134K 0.36 TCGA-Z2-A8RT-06 22 44967916 44967916 C T LINC00207 Intron 0.46 TCGA-Z2-A8RT-06 22 45768043 45768043 A C SMC1B Missense_Mutation p.F730V 0.40 tolerated(0.48) benign(0.008) TCGA-Z2-A8RT-06 22 45790601 45790601 C T SMC1B Missense_Mutation p.R434Q 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 22 46653167 46653167 C T PKDREJ Missense_Mutation p.R2018K 0.28 tolerated(0.53) possibly_damaging(0.577) TCGA-Z2-A8RT-06 22 46654155 46654155 G T PKDREJ Missense_Mutation p.L1689I 0.31 tolerated(0.06) possibly_damaging(0.589) TCGA-Z2-A8RT-06 22 46654156 46654156 G A PKDREJ Silent p.P1688P 0.32 TCGA-Z2-A8RT-06 22 46704557 46704557 C T GTSE1 Missense_Mutation p.S160F 0.40 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 22 47061582 47061582 C T GRAMD4 Missense_Mutation p.S263F 0.35 tolerated(0.22) probably_damaging(0.999) TCGA-Z2-A8RT-06 22 49103650 49103650 C T FAM19A5 Silent p.T128T 0.36 TCGA-Z2-A8RT-06 22 50181059 50181059 G A BRD1 Missense_Mutation p.P815S 0.44 deleterious(0.05) possibly_damaging(0.89) TCGA-Z2-A8RT-06 22 50552818 50552818 G A MOV10L1 Missense_Mutation p.G298E 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 22 50564677 50564677 C T MOV10L1 Silent p.I598I 0.25 TCGA-Z2-A8RT-06 22 50720628 50720628 G A PLXNB2 Silent p.S1034S 0.35 TCGA-Z2-A8RT-06 22 50900008 50900008 G A SBF1 Missense_Mutation p.A928V 0.50 deleterious(0) possibly_damaging(0.803) TCGA-Z2-A8RT-06 22 50928183 50928183 C T MIOX Silent p.F252F 0.42 TCGA-Z2-A8RT-06 2 101594182 101594182 C T NPAS2 Missense_Mutation p.P468L 0.23 tolerated(0.24) benign(0.004) TCGA-Z2-A8RT-06 2 10188490 10188490 C T KLF11 Silent p.V342V 0.45 TCGA-Z2-A8RT-06 2 10267265 10267265 C T RRM2 Missense_Mutation p.S299F 0.35 deleterious_low_confidence(0.03) benign(0.431) TCGA-Z2-A8RT-06 2 102979146 102979146 C T IL18R1 Missense_Mutation p.T9I 0.40 tolerated(0.63) benign(0.002) TCGA-Z2-A8RT-06 2 102984526 102984526 G A IL18R1 Missense_Mutation p.M100I 0.40 tolerated(0.24) benign(0.03) TCGA-Z2-A8RT-06 2 103013134 103013134 A T IL18R1 Missense_Mutation p.I472F 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 103095617 103095617 C T SLC9A4 Silent p.N192N 0.31 TCGA-Z2-A8RT-06 2 103119999 103119999 C T SLC9A4 Silent p.I271I 0.38 TCGA-Z2-A8RT-06 2 103121843 103121843 G A SLC9A4 Missense_Mutation p.G371S 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 103130698 103130698 C T SLC9A4 Missense_Mutation p.S570F 0.29 tolerated(0.71) benign(0.157) TCGA-Z2-A8RT-06 2 103148907 103148907 A G SLC9A4 Silent p.G719G 0.32 TCGA-Z2-A8RT-06 2 103148965 103148965 G A SLC9A4 Missense_Mutation p.G739R 0.38 tolerated(0.86) benign(0) TCGA-Z2-A8RT-06 2 103148967 103148967 A T SLC9A4 Silent p.G739G 0.39 TCGA-Z2-A8RT-06 2 106690494 106690494 G A C2orf40 Missense_Mutation p.E94K 0.32 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 2 107057788 107057788 G A RGPD3 Silent p.L343L 0.15 TCGA-Z2-A8RT-06 2 108499237 108499237 C T RGPD4 Missense_Mutation p.P1725L 0.27 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-Z2-A8RT-06 2 109271498 109271498 C T LIMS1 5'UTR 0.39 TCGA-Z2-A8RT-06 2 109380026 109380026 C T RANBP2 Missense_Mutation p.P1011S 0.34 tolerated(0.14) benign(0) TCGA-Z2-A8RT-06 2 109380027 109380027 C T RANBP2 Missense_Mutation p.P1011L 0.34 deleterious(0.04) benign(0.002) TCGA-Z2-A8RT-06 2 1094040 1094040 G A SNTG2 Missense_Mutation p.G90E 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 109545774 109545774 A T EDAR Missense_Mutation p.F79Y 0.39 tolerated(0.36) probably_damaging(0.968) TCGA-Z2-A8RT-06 2 110886804 110886804 G T NPHP1 Missense_Mutation p.P615T 0.22 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 2 111406950 111406950 G A BUB1 Silent p.F736F 0.33 TCGA-Z2-A8RT-06 2 112686894 112686894 G A MERTK Missense_Mutation p.E87K 0.34 tolerated(0.85) benign(0.001) TCGA-Z2-A8RT-06 2 112786199 112786199 C T MERTK Missense_Mutation p.H920Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 2 113089603 113089603 G A ZC3H6 Silent p.L1036L 0.35 TCGA-Z2-A8RT-06 2 113587873 113587873 C T IL1B 3'UTR 0.12 TCGA-Z2-A8RT-06 2 113587875 113587875 C T IL1B 3'UTR 0.11 TCGA-Z2-A8RT-06 2 113940585 113940585 G A PSD4 Silent p.L184L 0.36 TCGA-Z2-A8RT-06 2 113992993 113992993 G A PAX8 Silent p.F355F 0.38 TCGA-Z2-A8RT-06 2 11597343 11597343 A T E2F6 Missense_Mutation p.I42N 0.30 tolerated(0.17) benign(0.405) TCGA-Z2-A8RT-06 2 116447435 116447435 C T DPP10 Missense_Mutation p.P176S 0.30 deleterious(0.01) possibly_damaging(0.869) TCGA-Z2-A8RT-06 2 11727602 11727602 C T GREB1 Intron 0.29 TCGA-Z2-A8RT-06 2 119699923 119699923 C T MARCO Missense_Mutation p.T16I 0.37 tolerated(0.1) benign(0.002) TCGA-Z2-A8RT-06 2 119699924 119699924 C T MARCO Silent p.T16T 0.37 TCGA-Z2-A8RT-06 2 119727822 119727822 C T MARCO Missense_Mutation p.S111L 0.26 tolerated(0.84) possibly_damaging(0.463) TCGA-Z2-A8RT-06 2 119732122 119732122 G A MARCO Silent p.P198P 0.50 TCGA-Z2-A8RT-06 2 119739007 119739007 G A MARCO Missense_Mutation p.M263I 0.32 tolerated(0.19) benign(0.086) TCGA-Z2-A8RT-06 2 119752176 119752176 C T MARCO 3'UTR 0.33 TCGA-Z2-A8RT-06 2 121745982 121745982 C T GLI2 Missense_Mutation p.S831F 0.39 deleterious(0.02) possibly_damaging(0.896) TCGA-Z2-A8RT-06 2 121745983 121745983 C T GLI2 Silent p.S831S 0.41 TCGA-Z2-A8RT-06 2 121747246 121747246 C T GLI2 Silent p.P1252P 0.41 TCGA-Z2-A8RT-06 2 125555678 125555678 T C CNTNAP5 Missense_Mutation p.S999P 0.35 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 2 127944866 127944866 C T CYP27C1 Missense_Mutation p.R367Q 0.41 tolerated(1) benign(0.031) TCGA-Z2-A8RT-06 2 128015086 128015086 G A ERCC3 3'UTR 0.44 TCGA-Z2-A8RT-06 2 128088072 128088072 G A MAP3K2 Missense_Mutation p.P92S 0.39 deleterious(0.03) possibly_damaging(0.63) TCGA-Z2-A8RT-06 2 128185955 128185955 G A PROC Nonsense_Mutation p.W273* 0.40 TCGA-Z2-A8RT-06 2 130910997 130910997 G A SMPD4 Silent p.F679F 0.40 TCGA-Z2-A8RT-06 2 131459993 131459993 G A FAR2P3 RNA 0.25 TCGA-Z2-A8RT-06 2 131520024 131520024 A T AMER3 Missense_Mutation p.I127F 0.44 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 132290273 132290273 C T CCDC74A Silent p.P265P 0.37 TCGA-Z2-A8RT-06 2 133540340 133540340 C T NCKAP5 Silent p.G1348G 0.35 TCGA-Z2-A8RT-06 2 135988289 135988289 G A ZRANB3 Missense_Mutation p.S583L 0.44 tolerated(0.2) benign(0.007) TCGA-Z2-A8RT-06 2 136566641 136566641 C T LCT Silent p.R1092R 0.45 TCGA-Z2-A8RT-06 2 136567238 136567238 G A LCT Silent p.F893F 0.43 TCGA-Z2-A8RT-06 2 136575150 136575150 C T LCT Missense_Mutation p.E490K 0.39 tolerated(0.19) benign(0.027) TCGA-Z2-A8RT-06 2 136594258 136594258 G A LCT Missense_Mutation p.S161F 0.41 deleterious(0.04) possibly_damaging(0.774) TCGA-Z2-A8RT-06 2 137814118 137814118 G A THSD7B Missense_Mutation p.E90K 0.36 deleterious(0.02) possibly_damaging(0.486) TCGA-Z2-A8RT-06 2 137988655 137988655 C T THSD7B Missense_Mutation p.P589S 0.30 deleterious(0.02) possibly_damaging(0.607) TCGA-Z2-A8RT-06 2 137990665 137990665 C A THSD7B Missense_Mutation p.F704L 0.44 tolerated(0.1) benign(0.22) TCGA-Z2-A8RT-06 2 138373853 138373853 G A THSD7B Missense_Mutation p.E1181K 0.42 tolerated(0.95) unknown(0) TCGA-Z2-A8RT-06 2 141665599 141665599 C T LRP1B Missense_Mutation p.E1123K 0.35 probably_damaging(0.931) TCGA-Z2-A8RT-06 2 141806685 141806685 T C LRP1B Silent p.E553E 0.44 TCGA-Z2-A8RT-06 2 144244987 144244987 G A ARHGAP15 Missense_Mutation p.R250Q 0.41 deleterious(0.03) possibly_damaging(0.694) TCGA-Z2-A8RT-06 2 149243442 149243442 C T MBD5 Nonsense_Mutation p.Q993* 0.35 TCGA-Z2-A8RT-06 2 152424916 152424916 C T NEB Missense_Mutation p.D5884N 0.29 benign(0.023) TCGA-Z2-A8RT-06 2 152499159 152499159 T A NEB Nonsense_Mutation p.K2768* 0.55 TCGA-Z2-A8RT-06 2 152553214 152553214 G A NEB Silent p.F502F 0.42 TCGA-Z2-A8RT-06 2 152698602 152698602 C T CACNB4 Missense_Mutation p.E373K 0.33 deleterious(0) possibly_damaging(0.676) TCGA-Z2-A8RT-06 2 154996947 154996947 C T GALNT13 Silent p.I80I 0.46 TCGA-Z2-A8RT-06 2 155099341 155099341 C T GALNT13 Silent p.V203V 0.35 TCGA-Z2-A8RT-06 2 160717365 160717365 C G LY75-CD302 Missense_Mutation p.Q745H 0.28 deleterious(0) probably_damaging(0.977) TCGA-Z2-A8RT-06 2 160811813 160811813 G A PLA2R1 Silent p.L1066L 0.33 TCGA-Z2-A8RT-06 2 160901631 160901631 C T PLA2R1 Silent p.K49K 0.38 TCGA-Z2-A8RT-06 2 1652238 1652238 G A PXDN Missense_Mutation p.P1105L 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 165947238 165947238 C T SCN3A Missense_Mutation p.E1809K 0.32 tolerated(0.1) probably_damaging(0.996) TCGA-Z2-A8RT-06 2 166198861 166198861 C T SCN2A Missense_Mutation p.P815L 0.39 deleterious(0) possibly_damaging(0.894) TCGA-Z2-A8RT-06 2 166201289 166201289 C T SCN2A Silent p.F929F 0.32 TCGA-Z2-A8RT-06 2 166223777 166223777 G A SCN2A Missense_Mutation p.G1191R 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-Z2-A8RT-06 2 166806040 166806040 A T TTC21B Intron 0.31 TCGA-Z2-A8RT-06 2 166894641 166894641 A C SCN1A Missense_Mutation p.L864R 0.20 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 2 166900311 166900311 C T SCN1A Silent p.A637A 0.39 TCGA-Z2-A8RT-06 2 167083193 167083193 C T SCN9A Missense_Mutation p.E1417K 0.37 deleterious(0) possibly_damaging(0.886) TCGA-Z2-A8RT-06 2 167108404 167108404 G A SCN9A Intron 0.43 TCGA-Z2-A8RT-06 2 167288996 167288996 C T SCN7A Silent p.K808K 0.33 TCGA-Z2-A8RT-06 2 167318940 167318940 G A SCN7A Missense_Mutation p.R348W 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 167322478 167322478 C T SCN7A Silent p.G228G 0.32 TCGA-Z2-A8RT-06 2 167327182 167327182 G A SCN7A Missense_Mutation p.P203S 0.30 tolerated(1) benign(0.018) TCGA-Z2-A8RT-06 2 16740782 16740782 G A FAM49A Silent p.I261I 0.44 TCGA-Z2-A8RT-06 2 167760280 167760280 G A XIRP2 Silent p.L96L 0.49 TCGA-Z2-A8RT-06 2 167992489 167992489 C T XIRP2 Missense_Mutation p.S160F 0.42 benign(0.053) TCGA-Z2-A8RT-06 2 168100387 168100387 G A XIRP2 Missense_Mutation p.E829K 0.39 benign(0.169) TCGA-Z2-A8RT-06 2 168101218 168101218 C T XIRP2 Missense_Mutation p.L1106F 0.41 probably_damaging(1) TCGA-Z2-A8RT-06 2 168101732 168101732 T C XIRP2 Missense_Mutation p.F1277S 0.37 probably_damaging(1) TCGA-Z2-A8RT-06 2 168106016 168106016 C T XIRP2 Missense_Mutation p.S2705F 0.31 benign(0.045) TCGA-Z2-A8RT-06 2 168107231 168107231 C T XIRP2 Missense_Mutation p.P3110L 0.41 benign(0.019) TCGA-Z2-A8RT-06 2 168725781 168725781 C T B3GALT1 Missense_Mutation p.P78S 0.35 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 2 169758019 169758019 G A G6PC2 Missense_Mutation p.V60I 0.29 tolerated(0.06) benign(0.308) TCGA-Z2-A8RT-06 2 169801173 169801173 C T ABCB11 Missense_Mutation p.R851K 0.33 tolerated(1) benign(0.012) TCGA-Z2-A8RT-06 2 169814497 169814497 A T ABCB11 Missense_Mutation p.F774I 0.41 tolerated(1) benign(0.006) TCGA-Z2-A8RT-06 2 170413756 170413756 G A FASTKD1 Silent p.A341A 0.34 TCGA-Z2-A8RT-06 2 171070968 171070968 C T MYO3B Missense_Mutation p.S134L 0.42 deleterious(0) possibly_damaging(0.507) TCGA-Z2-A8RT-06 2 171258043 171258043 C T MYO3B Silent p.S657S 0.38 TCGA-Z2-A8RT-06 2 172950324 172950324 C T DLX1 5'UTR 0.34 TCGA-Z2-A8RT-06 2 172966158 172966158 C T DLX2 Intron 0.44 TCGA-Z2-A8RT-06 2 173330379 173330379 T - ITGA6 Frame_Shift_Del p.F99Lfs*31 0.30 TCGA-Z2-A8RT-06 2 174232378 174232378 G A CDCA7 Missense_Mutation p.E447K 0.41 deleterious(0.01) benign(0.421) TCGA-Z2-A8RT-06 2 17698896 17698896 G A RAD51AP2 Missense_Mutation p.P263S 0.32 tolerated(0.09) benign(0.215) TCGA-Z2-A8RT-06 2 178364360 178364360 C T AGPS Silent p.D459D 0.31 TCGA-Z2-A8RT-06 2 179360242 179360242 C T PLEKHA3 Missense_Mutation p.S157F 0.41 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 179395433 179395433 C T TTN Silent p.L35303L 0.44 TCGA-Z2-A8RT-06 2 179419654 179419654 T A TTN Missense_Mutation p.Y29511F 0.47 TCGA-Z2-A8RT-06 2 179425808 179425808 C T TTN Missense_Mutation p.D28351N 0.33 TCGA-Z2-A8RT-06 2 179426108 179426108 C G TTN Missense_Mutation p.D28251H 0.39 TCGA-Z2-A8RT-06 2 179428340 179428340 C T TTN Missense_Mutation p.E27507K 0.37 TCGA-Z2-A8RT-06 2 179441309 179441309 C T TTN Missense_Mutation p.G23221E 0.40 TCGA-Z2-A8RT-06 2 179454410 179454410 C T TTN Missense_Mutation p.G20681E 0.36 TCGA-Z2-A8RT-06 2 179456820 179456820 G A TTN Silent p.F19937F 0.31 TCGA-Z2-A8RT-06 2 179472254 179472254 C T TTN Missense_Mutation p.D17721N 0.28 TCGA-Z2-A8RT-06 2 179474877 179474877 T G TTN Missense_Mutation p.K17126Q 0.43 TCGA-Z2-A8RT-06 2 179481267 179481267 C T TTN Missense_Mutation p.G16084E 0.42 TCGA-Z2-A8RT-06 2 179553830 179553830 T A TTN Missense_Mutation p.E10682V 0.36 TCGA-Z2-A8RT-06 2 179568878 179568878 G A TTN Silent p.I10073I 0.35 TCGA-Z2-A8RT-06 2 179570032 179570032 C T TTN Missense_Mutation p.E9825K 0.44 TCGA-Z2-A8RT-06 2 179577621 179577621 C T TTN Missense_Mutation p.G9044E 0.29 TCGA-Z2-A8RT-06 2 179578622 179578622 A G TTN Splice_Site p.X8921_splice 0.38 TCGA-Z2-A8RT-06 2 179595911 179595911 C T TTN Silent p.E5827E 0.35 TCGA-Z2-A8RT-06 2 179597640 179597640 C T TTN Missense_Mutation p.M5421I 0.37 TCGA-Z2-A8RT-06 2 179599330 179599330 G A TTN Missense_Mutation p.P5074L 0.40 TCGA-Z2-A8RT-06 2 179613768 179613768 C T TTN Intron 0.43 TCGA-Z2-A8RT-06 2 179614745 179614745 C T TTN Intron 0.38 TCGA-Z2-A8RT-06 2 17962014 17962014 C A GEN1 Missense_Mutation p.S512Y 0.30 tolerated(0.61) benign(0.169) TCGA-Z2-A8RT-06 2 179640660 179640660 C T TTN Silent p.V1977V 0.38 TCGA-Z2-A8RT-06 2 179640923 179640923 G A TTN Missense_Mutation p.R1890C 0.34 TCGA-Z2-A8RT-06 2 179702336 179702336 C T CCDC141 Missense_Mutation p.E1204K 0.32 deleterious(0.02) possibly_damaging(0.627) TCGA-Z2-A8RT-06 2 179720258 179720258 C T CCDC141 Missense_Mutation p.R959K 0.34 tolerated(1) benign(0.005) TCGA-Z2-A8RT-06 2 179720259 179720259 T A CCDC141 Missense_Mutation p.R959W 0.34 deleterious(0) possibly_damaging(0.882) TCGA-Z2-A8RT-06 2 183099217 183099217 C T PDE1A Missense_Mutation p.R136Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 183593710 183593710 C T DNAJC10 Missense_Mutation p.R208W 0.28 deleterious(0.02) possibly_damaging(0.722) TCGA-Z2-A8RT-06 2 183731259 183731259 C T FRZB Missense_Mutation p.G8R 0.56 tolerated_low_confidence(0.14) benign(0) TCGA-Z2-A8RT-06 2 183989089 183989089 C T NUP35 5'UTR 0.40 TCGA-Z2-A8RT-06 2 185803640 185803640 C T ZNF804A Missense_Mutation p.P1173S 0.40 tolerated(0.05) benign(0.185) TCGA-Z2-A8RT-06 2 188250323 188250323 C T CALCRL 5'UTR 0.33 TCGA-Z2-A8RT-06 2 189854849 189854849 G A COL3A1 Missense_Mutation p.G240R 0.33 unknown(0) TCGA-Z2-A8RT-06 2 189899672 189899672 G A COL5A2 Silent p.F1441F 0.33 TCGA-Z2-A8RT-06 2 189931165 189931165 G A COL5A2 Missense_Mutation p.P505L 0.43 probably_damaging(0.991) TCGA-Z2-A8RT-06 2 190323591 190323591 C T WDR75 Missense_Mutation p.R228C 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 190428692 190428692 G A SLC40A1 Silent p.S340S 0.44 TCGA-Z2-A8RT-06 2 1926115 1926115 C T MYT1L Missense_Mutation p.E476K 0.35 tolerated(0.1) benign(0.363) TCGA-Z2-A8RT-06 2 196671524 196671524 C T DNAH7 Nonsense_Mutation p.W3372* 0.30 TCGA-Z2-A8RT-06 2 196671525 196671525 C T DNAH7 Nonsense_Mutation p.W3372* 0.31 TCGA-Z2-A8RT-06 2 196737182 196737182 G A DNAH7 Missense_Mutation p.P2142L 0.53 tolerated(0.06) benign(0.099) TCGA-Z2-A8RT-06 2 196825473 196825473 C T DNAH7 Missense_Mutation p.G801E 0.35 tolerated(0.22) probably_damaging(0.98) TCGA-Z2-A8RT-06 2 197183815 197183815 G A HECW2 Missense_Mutation p.S600F 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-Z2-A8RT-06 2 198621162 198621162 G A BOLL Missense_Mutation p.S252L 0.33 deleterious(0.01) benign(0.234) TCGA-Z2-A8RT-06 2 198950915 198950915 C T PLCL1 Missense_Mutation p.H892Y 0.29 tolerated(0.11) benign(0.042) TCGA-Z2-A8RT-06 2 20138049 20138049 C T WDR35 Silent p.E691E 0.39 TCGA-Z2-A8RT-06 2 201502954 201502954 C T AOX1 Missense_Mutation p.R833C 0.36 deleterious(0.01) probably_damaging(0.973) TCGA-Z2-A8RT-06 2 201524747 201524747 C T AOX1 Silent p.L1110L 0.28 TCGA-Z2-A8RT-06 2 201943654 201943654 C T NDUFB3 Missense_Mutation p.P17S 0.47 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 2 202208984 202208984 G A ALS2CR12 Missense_Mutation p.T124I 0.33 deleterious(0.03) possibly_damaging(0.531) TCGA-Z2-A8RT-06 2 202469390 202469390 T A ALS2CR11 Missense_Mutation p.S88C 0.26 deleterious(0.01) possibly_damaging(0.54) TCGA-Z2-A8RT-06 2 202547562 202547562 G A MPP4 Missense_Mutation p.H218Y 0.31 deleterious(0.01) benign(0.393) TCGA-Z2-A8RT-06 2 203149188 203149188 C T NOP58 Missense_Mutation p.L140F 0.39 deleterious(0) probably_damaging(0.963) TCGA-Z2-A8RT-06 2 204082013 204082013 C T NBEAL1 Missense_Mutation p.S2674L 0.32 deleterious(0) possibly_damaging(0.509) TCGA-Z2-A8RT-06 2 206165385 206165385 C T PARD3B Nonsense_Mutation p.R711* 0.35 TCGA-Z2-A8RT-06 2 207172459 207172459 G A ZDBF2 Silent p.K1069K 0.44 TCGA-Z2-A8RT-06 2 207175726 207175726 C T ZDBF2 Silent p.I2158I 0.26 TCGA-Z2-A8RT-06 2 207346009 207346009 C T ADAM23 Silent p.F162F 0.42 TCGA-Z2-A8RT-06 2 207482325 207482325 G A ADAM23 Missense_Mutation p.D825N 0.47 tolerated(0.23) probably_damaging(0.996) TCGA-Z2-A8RT-06 2 207528023 207528023 C T DYTN Missense_Mutation p.D413N 0.26 tolerated(0.16) benign(0.085) TCGA-Z2-A8RT-06 2 207528024 207528024 C T DYTN Silent p.G412G 0.43 TCGA-Z2-A8RT-06 2 207530663 207530663 C T DYTN Silent p.R357R 0.35 TCGA-Z2-A8RT-06 2 211442226 211442226 G A CPS1 Missense_Mutation p.E161K 0.42 tolerated(0.13) benign(0.22) TCGA-Z2-A8RT-06 2 211502554 211502554 C T CPS1 Missense_Mutation p.P945L 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 21231351 21231351 C T APOB Missense_Mutation p.G2797R 0.33 probably_damaging(0.999) TCGA-Z2-A8RT-06 2 21232627 21232627 C T APOB Silent p.K2371K 0.31 TCGA-Z2-A8RT-06 2 21233995 21233995 C T APOB Silent p.G1915G 0.43 TCGA-Z2-A8RT-06 2 215278996 215278996 G A VWC2L Missense_Mutation p.E27K 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-Z2-A8RT-06 2 215820039 215820039 C A ABCA12 Nonsense_Mutation p.E2094* 0.37 TCGA-Z2-A8RT-06 2 215917268 215917268 G A ABCA12 Silent p.P150P 0.35 TCGA-Z2-A8RT-06 2 215917269 215917269 G A ABCA12 Missense_Mutation p.P150L 0.35 tolerated(0.86) benign(0.002) TCGA-Z2-A8RT-06 2 218682799 218682799 G A TNS1 Missense_Mutation p.P1315L 0.25 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 218682800 218682800 G A TNS1 Missense_Mutation p.P1315S 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 218683464 218683464 G A TNS1 Silent p.F1093F 0.46 TCGA-Z2-A8RT-06 2 218947900 218947900 G A RUFY4 Missense_Mutation p.D495N 0.25 tolerated(0.13) benign(0.03) TCGA-Z2-A8RT-06 2 219028847 219028847 C T CXCR1 3'UTR 0.38 TCGA-Z2-A8RT-06 2 219029031 219029031 G A CXCR1 Missense_Mutation p.P302S 0.33 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 219295537 219295537 C T VIL1 Silent p.F346F 0.47 TCGA-Z2-A8RT-06 2 219300072 219300072 G A VIL1 Missense_Mutation p.E581K 0.43 tolerated(0.36) benign(0.027) TCGA-Z2-A8RT-06 2 219360558 219360558 G A USP37 Missense_Mutation p.S466L 0.38 tolerated(0.08) benign(0.061) TCGA-Z2-A8RT-06 2 219887946 219887946 G A CCDC108 Nonsense_Mutation p.Q935* 0.29 TCGA-Z2-A8RT-06 2 220150754 220150754 C T DNAJB2 3'UTR 0.28 TCGA-Z2-A8RT-06 2 220346040 220346040 C T SPEG Missense_Mutation p.S1795F 0.36 probably_damaging(1) TCGA-Z2-A8RT-06 2 220399907 220399907 G A ASIC4 Missense_Mutation p.G472S 0.48 tolerated(0.25) benign(0.042) TCGA-Z2-A8RT-06 2 222301301 222301301 G A EPHA4 Nonsense_Mutation p.Q722* 0.41 TCGA-Z2-A8RT-06 2 223168688 223168688 G A CCDC140 Missense_Mutation p.G23R 0.45 tolerated_low_confidence(0.11) probably_damaging(0.98) TCGA-Z2-A8RT-06 2 225378270 225378270 A T CUL3 Missense_Mutation p.F209I 0.25 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 2 227895227 227895227 G A COL4A4 Missense_Mutation p.P1302L 0.36 unknown(0) TCGA-Z2-A8RT-06 2 227922317 227922317 C T COL4A4 Splice_Site p.X795_splice 0.33 TCGA-Z2-A8RT-06 2 228109685 228109685 G A COL4A3 Missense_Mutation p.G100R 0.40 probably_damaging(1) TCGA-Z2-A8RT-06 2 228149061 228149061 G A COL4A3 Missense_Mutation p.G961R 0.62 unknown(0) TCGA-Z2-A8RT-06 2 228855867 228855867 C T SPHKAP Missense_Mutation p.S1603N 0.40 tolerated(0.44) benign(0.074) TCGA-Z2-A8RT-06 2 228881286 228881286 C T SPHKAP Silent p.L1428L 0.40 TCGA-Z2-A8RT-06 2 228883060 228883060 C T SPHKAP Missense_Mutation p.G837E 0.38 tolerated(0.22) benign(0.029) TCGA-Z2-A8RT-06 2 228883635 228883635 C T SPHKAP Silent p.R645R 0.35 TCGA-Z2-A8RT-06 2 228884038 228884038 G A SPHKAP Missense_Mutation p.S511F 0.39 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 231253315 231253315 G A SP140L Missense_Mutation p.D276N 0.20 tolerated(1) benign(0.051) TCGA-Z2-A8RT-06 2 231338092 231338092 C T SP100 Missense_Mutation p.P495S 0.40 tolerated(1) benign(0.104) TCGA-Z2-A8RT-06 2 233321981 233321981 G A ALPI Silent p.Q199Q 0.27 TCGA-Z2-A8RT-06 2 233897389 233897389 C T NEU2 Missense_Mutation p.S3F 0.43 deleterious(0) possibly_damaging(0.895) TCGA-Z2-A8RT-06 2 234077985 234077985 C T INPP5D Silent p.F518F 0.58 TCGA-Z2-A8RT-06 2 234106966 234106966 G A INPP5D Silent p.K961K 0.36 TCGA-Z2-A8RT-06 2 234164773 234164773 T A ATG16L1 Missense_Mutation p.D47E 0.30 tolerated(0.12) probably_damaging(0.997) TCGA-Z2-A8RT-06 2 234164774 234164774 C A ATG16L1 Missense_Mutation p.L48I 0.30 tolerated(0.06) benign(0.43) TCGA-Z2-A8RT-06 2 234197362 234197362 C T ATG16L1 Intron 0.35 TCGA-Z2-A8RT-06 2 234229384 234229384 C T SAG Missense_Mutation p.P97L 0.44 deleterious(0.03) possibly_damaging(0.858) TCGA-Z2-A8RT-06 2 234247353 234247353 G A SAG Missense_Mutation p.G326R 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 234545731 234545731 C T UGT1A10 Missense_Mutation p.S188F 0.37 deleterious(0) possibly_damaging(0.861) TCGA-Z2-A8RT-06 2 234580715 234580715 G A UGT1A9 Silent p.V45V 0.35 TCGA-Z2-A8RT-06 2 234602173 234602173 C T UGT1A6 Missense_Mutation p.P175S 0.42 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 2 234627717 234627717 G A UGT1A4 Nonsense_Mutation p.W84* 0.37 TCGA-Z2-A8RT-06 2 234847758 234847758 C T TRPM8 Silent p.F155F 0.31 TCGA-Z2-A8RT-06 2 237233361 237233361 T G IQCA1 Missense_Mutation p.E813D 0.14 tolerated(0.33) benign(0.004) TCGA-Z2-A8RT-06 2 237374191 237374191 C T IQCA1 Missense_Mutation p.E295K 0.42 tolerated(0.09) possibly_damaging(0.601) TCGA-Z2-A8RT-06 2 237415933 237415933 C T IQCA1 5'UTR 0.28 TCGA-Z2-A8RT-06 2 239051556 239051556 C T KLHL30 Silent p.F297F 0.30 TCGA-Z2-A8RT-06 2 240961591 240961591 A T NDUFA10 Missense_Mutation p.L81Q 0.44 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 2 240961592 240961592 G A NDUFA10 Silent p.L81L 0.45 TCGA-Z2-A8RT-06 2 241451369 241451369 G A ANKMY1 Missense_Mutation p.P643L 0.30 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 2 241622288 241622288 G A AQP12B 5'UTR 0.86 TCGA-Z2-A8RT-06 2 242035633 242035633 G A MTERFD2 Missense_Mutation p.S309F 0.36 deleterious(0) probably_damaging(0.976) TCGA-Z2-A8RT-06 2 242169071 242169071 G A HDLBP Missense_Mutation p.P1251L 0.26 deleterious(0) probably_damaging(0.962) TCGA-Z2-A8RT-06 2 242173251 242173251 T C HDLBP Missense_Mutation p.K1091R 0.45 tolerated(0.39) benign(0.026) TCGA-Z2-A8RT-06 2 242545828 242545828 G A THAP4 Missense_Mutation p.S434L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 2 24255798 24255798 G A C2orf44 Missense_Mutation p.P613S 0.33 tolerated(0.49) benign(0.187) TCGA-Z2-A8RT-06 2 24531625 24531625 G A ITSN2 Silent p.S218S 0.35 TCGA-Z2-A8RT-06 2 26534277 26534277 C T GPR113 Silent p.L773L 0.41 TCGA-Z2-A8RT-06 2 26587706 26587706 C T EPT1 Missense_Mutation p.P45S 0.23 deleterious(0) benign(0.343) TCGA-Z2-A8RT-06 2 26680956 26680956 G A OTOF 3'UTR 0.29 TCGA-Z2-A8RT-06 2 26702507 26702507 C T OTOF Missense_Mutation p.E643K 0.41 tolerated(0.84) benign(0.001) TCGA-Z2-A8RT-06 2 26703873 26703873 G A OTOF Silent p.F528F 0.38 TCGA-Z2-A8RT-06 2 27800866 27800866 G A C2orf16 Missense_Mutation p.R476K 0.38 tolerated(0.83) benign(0) TCGA-Z2-A8RT-06 2 28748812 28748812 G A PLB1 Missense_Mutation p.V109I 0.27 tolerated(0.21) benign(0.04) TCGA-Z2-A8RT-06 2 28821615 28821615 G A PLB1 Missense_Mutation p.G821E 0.38 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 2 28865882 28865882 C T PLB1 Silent p.G1444G 0.31 TCGA-Z2-A8RT-06 2 29259610 29259610 G A FAM179A Missense_Mutation p.M874I 0.62 tolerated(0.1) benign(0.245) TCGA-Z2-A8RT-06 2 29295675 29295675 C T C2orf71 Missense_Mutation p.E485K 0.42 tolerated(0.08) possibly_damaging(0.868) TCGA-Z2-A8RT-06 2 29296344 29296344 C T C2orf71 Missense_Mutation p.E262K 0.41 deleterious(0.02) possibly_damaging(0.617) TCGA-Z2-A8RT-06 2 29416323 29416323 T C ALK Missense_Mutation p.N1544D 0.35 tolerated(0.2) benign(0.021) TCGA-Z2-A8RT-06 2 29606649 29606649 T G ALK Missense_Mutation p.N411H 0.38 tolerated(0.12) probably_damaging(0.938) TCGA-Z2-A8RT-06 2 30379532 30379532 C T YPEL5 Silent p.F5F 0.38 TCGA-Z2-A8RT-06 2 30379533 30379533 C T YPEL5 Missense_Mutation p.L6F 0.37 tolerated(0.16) benign(0.314) TCGA-Z2-A8RT-06 2 30966436 30966436 C T CAPN13 Missense_Mutation p.E420K 0.37 tolerated(0.36) benign(0.05) TCGA-Z2-A8RT-06 2 31133906 31133906 G A GALNT14 Missense_Mutation p.S512F 0.26 deleterious(0.01) benign(0.131) TCGA-Z2-A8RT-06 2 3392132 3392132 C T TRAPPC12 Silent p.A246A 0.41 TCGA-Z2-A8RT-06 2 3729255 3729255 C T ALLC Silent p.T110T 0.50 TCGA-Z2-A8RT-06 2 39406350 39406350 C T CDKL4 Missense_Mutation p.G302E 0.31 tolerated(0.23) benign(0.356) TCGA-Z2-A8RT-06 2 40656036 40656036 C T SLC8A1 Missense_Mutation p.G462E 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 2 43787422 43787422 A G THADA Missense_Mutation p.L805S 0.44 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 2 43968133 43968133 C T PLEKHH2 Missense_Mutation p.P1058S 0.30 tolerated(0.25) benign(0.105) TCGA-Z2-A8RT-06 2 43992661 43992661 G A PLEKHH2 Missense_Mutation p.G1469E 0.36 tolerated(1) benign(0) TCGA-Z2-A8RT-06 2 46986972 46986972 C T SOCS5 Missense_Mutation p.H435Y 0.37 deleterious(0.02) probably_damaging(0.979) TCGA-Z2-A8RT-06 2 47184142 47184142 C T TTC7A Silent p.I171I 0.35 TCGA-Z2-A8RT-06 2 48010259 48010259 C T MSH6 5'UTR 0.24 TCGA-Z2-A8RT-06 2 48896885 48896885 A G STON1-GTF2A1L Missense_Mutation p.S1039G 0.33 tolerated(0.17) benign(0.111) TCGA-Z2-A8RT-06 2 48914930 48914930 C T LHCGR Missense_Mutation p.G669E 0.42 tolerated(0.05) benign(0.051) TCGA-Z2-A8RT-06 2 50149102 50149102 C T NRXN1 Missense_Mutation p.D1542N 0.30 deleterious_low_confidence(0.04) benign(0.099) TCGA-Z2-A8RT-06 2 50573947 50573947 C T NRXN1 Intron 0.45 TCGA-Z2-A8RT-06 2 50850606 50850606 G A NRXN1 Missense_Mutation p.S360L 0.49 deleterious(0.01) possibly_damaging(0.7) TCGA-Z2-A8RT-06 2 66667710 66667710 C T MEIS1 Missense_Mutation p.P133L 0.29 tolerated(0.06) benign(0.049) TCGA-Z2-A8RT-06 2 66691305 66691305 C T MEIS1 Missense_Mutation p.S232F 0.41 deleterious(0.02) possibly_damaging(0.635) TCGA-Z2-A8RT-06 2 66691306 66691306 C T MEIS1 Silent p.S232S 0.41 TCGA-Z2-A8RT-06 2 69093502 69093502 C T BMP10 Missense_Mutation p.G179E 0.30 tolerated(0.64) benign(0.002) TCGA-Z2-A8RT-06 2 70901940 70901940 C T ADD2 Silent p.L537L 0.35 TCGA-Z2-A8RT-06 2 71014835 71014835 C T FIGLA Silent p.A110A 0.37 TCGA-Z2-A8RT-06 2 71185196 71185196 C T ATP6V1B1 Silent p.I65I 0.34 TCGA-Z2-A8RT-06 2 71753357 71753357 G A DYSF Missense_Mutation p.R386K 0.35 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 2 73487610 73487610 C T FBXO41 Missense_Mutation p.A786T 0.43 deleterious(0) possibly_damaging(0.602) TCGA-Z2-A8RT-06 2 73678763 73678763 G A ALMS1 Silent p.E1702E 0.41 TCGA-Z2-A8RT-06 2 74042608 74042608 A G C2orf78 Missense_Mutation p.N420D 0.40 tolerated(0.11) benign(0.164) TCGA-Z2-A8RT-06 2 74043650 74043650 C T C2orf78 Missense_Mutation p.P767L 0.36 tolerated(0.07) benign(0.013) TCGA-Z2-A8RT-06 2 74274791 74274791 C T TET3 Missense_Mutation p.P448S 0.52 tolerated(0.14) benign(0.039) TCGA-Z2-A8RT-06 2 74326570 74326570 C T TET3 Silent p.F1010F 0.29 TCGA-Z2-A8RT-06 2 74475539 74475539 G A SLC4A5 Silent p.I576I 0.33 TCGA-Z2-A8RT-06 2 77745852 77745852 A G LRRTM4 Silent p.P381P 0.42 TCGA-Z2-A8RT-06 2 79312339 79312339 C T REG1B 3'UTR 0.32 TCGA-Z2-A8RT-06 2 79362857 79362857 C T REG1P RNA 0.53 TCGA-Z2-A8RT-06 2 79385524 79385524 G A REG3A Silent p.F87F 0.31 TCGA-Z2-A8RT-06 2 80530834 80530834 G A LRRTM1 Silent p.S37S 0.36 TCGA-Z2-A8RT-06 2 80782961 80782961 G A CTNNA2 Missense_Mutation p.E562K 0.40 deleterious(0.04) benign(0.333) TCGA-Z2-A8RT-06 2 84518063 84518063 G A FUNDC2P2 RNA 0.41 TCGA-Z2-A8RT-06 2 84518504 84518504 C T FUNDC2P2 RNA 0.32 TCGA-Z2-A8RT-06 2 88407989 88407989 G A SMYD1 Missense_Mutation p.M415I 0.38 tolerated(0.05) benign(0.073) TCGA-Z2-A8RT-06 2 89197231 89197231 C T IGKV5-2 Silent p.T92T 0.33 TCGA-Z2-A8RT-06 2 89197232 89197232 C T IGKV5-2 Missense_Mutation p.L93F 0.33 tolerated(0.13) probably_damaging(0.981) TCGA-Z2-A8RT-06 2 89417293 89417293 G A IGKV1-17 Missense_Mutation p.P6S 0.11 tolerated(0.06) benign(0.32) TCGA-Z2-A8RT-06 2 90121673 90121673 C T IGKV1D-17 Missense_Mutation p.P6S 0.28 tolerated(0.06) benign(0.32) TCGA-Z2-A8RT-06 2 90260176 90260176 C T IGKV1D-8 Silent p.F93F 0.31 TCGA-Z2-A8RT-06 2 95494775 95494775 T C ANKRD20A8P RNA 0.43 TCGA-Z2-A8RT-06 2 95947050 95947050 C T PROM2 Silent p.F496F 0.38 TCGA-Z2-A8RT-06 2 96078471 96078471 C T FAHD2A Missense_Mutation p.P281S 0.38 tolerated(0.14) probably_damaging(0.956) TCGA-Z2-A8RT-06 2 96943984 96943984 G A SNRNP200 Silent p.L1867L 0.36 TCGA-Z2-A8RT-06 2 97866068 97866068 C T ANKRD36 Intron 0.18 TCGA-Z2-A8RT-06 2 98986424 98986424 T G CNGA3 5'UTR 0.41 TCGA-Z2-A8RT-06 2 98994258 98994258 C T CNGA3 Silent p.I70I 0.22 TCGA-Z2-A8RT-06 2 99294897 99294897 C T MGAT4A Silent p.L44L 0.32 TCGA-Z2-A8RT-06 2 99861827 99861827 C T LYG2 Silent p.V93V 0.38 TCGA-Z2-A8RT-06 3 100029385 100029385 C T TBC1D23 Nonsense_Mutation p.R518* 0.30 TCGA-Z2-A8RT-06 3 100103355 100103355 G A TOMM70A Missense_Mutation p.L235F 0.39 deleterious(0.01) possibly_damaging(0.614) TCGA-Z2-A8RT-06 3 100174745 100174745 C T LNP1 Missense_Mutation p.P171L 0.38 deleterious(0.01) benign(0.248) TCGA-Z2-A8RT-06 3 10089677 10089677 C T FANCD2 Missense_Mutation p.S452L 0.14 tolerated(0.74) benign(0.012) TCGA-Z2-A8RT-06 3 100963499 100963499 G A IMPG2 Missense_Mutation p.P559L 0.36 deleterious(0.02) benign(0.022) TCGA-Z2-A8RT-06 3 101232049 101232049 G A SENP7 5'Flank 0.31 TCGA-Z2-A8RT-06 3 10370570 10370570 C T ATP2B2 Silent p.T1220T 0.38 TCGA-Z2-A8RT-06 3 105378040 105378040 G A CBLB Missense_Mutation p.P908L 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 3 105378048 105378048 G A CBLB Silent p.P905P 0.28 TCGA-Z2-A8RT-06 3 108156521 108156521 C T MYH15 Missense_Mutation p.R1054K 0.42 tolerated(1) benign(0.257) TCGA-Z2-A8RT-06 3 108475928 108475928 G A RETNLB Silent p.I35I 0.30 TCGA-Z2-A8RT-06 3 108836856 108836856 G A MORC1 Silent p.F17F 0.36 TCGA-Z2-A8RT-06 3 109027093 109027093 C T DPPA2 Silent p.R148R 0.45 TCGA-Z2-A8RT-06 3 109031460 109031460 T A DPPA2 Missense_Mutation p.E38V 0.40 deleterious(0.04) probably_damaging(0.99) TCGA-Z2-A8RT-06 3 11078627 11078627 C T SLC6A1 Missense_Mutation p.S592F 0.42 deleterious(0.04) benign(0.372) TCGA-Z2-A8RT-06 3 111432904 111432904 G A PLCXD2 Silent p.A265A 0.42 TCGA-Z2-A8RT-06 3 111632631 111632631 C T PHLDB2 Intron 0.46 TCGA-Z2-A8RT-06 3 111927207 111927207 G A SLC9C1 Missense_Mutation p.R602C 0.31 tolerated(0.06) benign(0.009) TCGA-Z2-A8RT-06 3 112005621 112005621 C T SLC9C1 Silent p.K6K 0.45 TCGA-Z2-A8RT-06 3 112709838 112709838 G A GTPBP8 5'UTR 0.33 TCGA-Z2-A8RT-06 3 11301395 11301395 G A HRH1 Silent p.R224R 0.36 TCGA-Z2-A8RT-06 3 113850238 113850238 G A DRD3 Missense_Mutation p.P245S 0.36 tolerated(0.07) benign(0.015) TCGA-Z2-A8RT-06 3 114070349 114070349 G A ZBTB20 Silent p.I192I 0.36 TCGA-Z2-A8RT-06 3 118621564 118621569 CCGGGA - IGSF11 In_Frame_Del p.V365_P366del 0.38 TCGA-Z2-A8RT-06 3 118865567 118865567 G A C3orf30 Silent p.Q177Q 0.37 TCGA-Z2-A8RT-06 3 119529005 119529005 C T NR1I2 Silent p.L138L 0.35 TCGA-Z2-A8RT-06 3 120347087 120347087 C T HGD 3'UTR 0.29 TCGA-Z2-A8RT-06 3 120347169 120347169 G A HGD 3'UTR 0.42 TCGA-Z2-A8RT-06 3 120449611 120449611 G A RABL3 Missense_Mutation p.H24Y 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-Z2-A8RT-06 3 120764340 120764340 A T STXBP5L Missense_Mutation p.K143I 0.41 deleterious(0) possibly_damaging(0.864) TCGA-Z2-A8RT-06 3 120764377 120764377 G A STXBP5L Silent p.R155R 0.38 TCGA-Z2-A8RT-06 3 120876350 120876350 G A STXBP5L Splice_Site p.X252_splice 0.43 TCGA-Z2-A8RT-06 3 121388168 121388168 G A GOLGB1 Missense_Mutation p.S3071F 0.37 probably_damaging(1) TCGA-Z2-A8RT-06 3 121712329 121712329 C T ILDR1 Missense_Mutation p.D423N 0.56 tolerated(0.07) benign(0.007) TCGA-Z2-A8RT-06 3 121810456 121810456 G A CD86 Missense_Mutation p.G8E 0.40 tolerated(0.17) benign(0.032) TCGA-Z2-A8RT-06 3 121828168 121828168 C T CD86 Missense_Mutation p.P254S 0.27 tolerated(0.1) benign(0.003) TCGA-Z2-A8RT-06 3 121976060 121976060 G A CASR Silent p.K106K 0.39 TCGA-Z2-A8RT-06 3 121994771 121994771 C T CASR Missense_Mutation p.S497F 0.41 deleterious(0.03) probably_damaging(0.99) TCGA-Z2-A8RT-06 3 122003363 122003363 C T CASR Silent p.F864F 0.42 TCGA-Z2-A8RT-06 3 122259646 122259646 G A PARP9 Missense_Mutation p.P515S 0.38 tolerated(0.08) benign(0.271) TCGA-Z2-A8RT-06 3 122345758 122345758 C T PARP15 Missense_Mutation p.S439L 0.34 tolerated(0.27) possibly_damaging(0.687) TCGA-Z2-A8RT-06 3 122630907 122630907 G A SEMA5B Missense_Mutation p.S1023L 0.33 deleterious(0.02) benign(0.099) TCGA-Z2-A8RT-06 3 123332975 123332975 C T MYLK Missense_Mutation p.E1908K 0.30 tolerated_low_confidence(0.09) unknown(0) TCGA-Z2-A8RT-06 3 123426842 123426842 C T MYLK Missense_Mutation p.D717N 0.40 deleterious(0) benign(0.003) TCGA-Z2-A8RT-06 3 124351470 124351470 C T KALRN Missense_Mutation p.R97C 0.39 tolerated(0.05) benign(0.009) TCGA-Z2-A8RT-06 3 124415035 124415035 G A AC080008.1 3'Flank 0.38 TCGA-Z2-A8RT-06 3 126291141 126291141 G A TXNRD3NB Silent p.S82S 0.38 TCGA-Z2-A8RT-06 3 126915930 126915930 C T C3orf56 Silent p.F134F 0.37 TCGA-Z2-A8RT-06 3 126915957 126915957 C T C3orf56 Silent p.P143P 0.43 TCGA-Z2-A8RT-06 3 127295710 127295710 G A TPRA1 Silent p.F124F 0.27 TCGA-Z2-A8RT-06 3 127642152 127642152 C T KBTBD12 Missense_Mutation p.S83L 0.48 tolerated(0.19) benign(0.008) TCGA-Z2-A8RT-06 3 128706574 128706574 G A KIAA1257 Silent p.F184F 0.41 TCGA-Z2-A8RT-06 3 129238463 129238463 C T IFT122 Missense_Mutation p.S1226F 0.43 deleterious(0) benign(0.047) TCGA-Z2-A8RT-06 3 129251450 129251450 G A RHO Missense_Mutation p.M257I 0.34 deleterious(0) probably_damaging(0.993) TCGA-Z2-A8RT-06 3 12983279 12983279 G A IQSEC1 Missense_Mutation p.S51F 0.50 deleterious(0.01) benign(0.372) TCGA-Z2-A8RT-06 3 130282132 130282132 G A COL6A6 Silent p.R95R 0.40 TCGA-Z2-A8RT-06 3 130354605 130354605 G A COL6A6 Missense_Mutation p.M1697I 0.39 tolerated(0.34) benign(0.013) TCGA-Z2-A8RT-06 3 130454770 130454770 T G PIK3R4 Silent p.G270G 0.44 TCGA-Z2-A8RT-06 3 130714935 130714935 C T ATP2C1 Silent p.F736F 0.37 TCGA-Z2-A8RT-06 3 132349354 132349354 C T ACAD11 Missense_Mutation p.G297E 0.37 deleterious(0.04) benign(0.033) TCGA-Z2-A8RT-06 3 133474262 133474262 C G TF Missense_Mutation p.F186L 0.37 tolerated(0.18) benign(0.102) TCGA-Z2-A8RT-06 3 133647726 133647726 C T C3orf36 5'UTR 0.48 TCGA-Z2-A8RT-06 3 134851796 134851796 C T EPHB1 Missense_Mutation p.P401L 0.36 tolerated(0.14) benign(0.004) TCGA-Z2-A8RT-06 3 136152490 136152490 G A STAG1 Missense_Mutation p.R520C 0.44 tolerated(0.08) possibly_damaging(0.677) TCGA-Z2-A8RT-06 3 137886048 137886048 G A DBR1 Nonsense_Mutation p.R197* 0.27 TCGA-Z2-A8RT-06 3 137886049 137886049 G A DBR1 Silent p.F196F 0.26 TCGA-Z2-A8RT-06 3 138738970 138738970 G A PRR23B Silent p.L178L 0.41 TCGA-Z2-A8RT-06 3 138739015 138739015 G A PRR23B Silent p.F163F 0.49 TCGA-Z2-A8RT-06 3 138762879 138762879 C T PRR23C Missense_Mutation p.R195Q 0.30 deleterious(0.03) benign(0.064) TCGA-Z2-A8RT-06 3 141163962 141163962 C T ZBTB38 Missense_Mutation p.S911F 0.47 deleterious(0) probably_damaging(0.93) TCGA-Z2-A8RT-06 3 141497496 141497496 C T GRK7 Missense_Mutation p.P124S 0.36 tolerated(0.56) benign(0.006) TCGA-Z2-A8RT-06 3 14187550 14187550 G A XPC Missense_Mutation p.P905L 0.41 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 142186901 142186901 G A ATR Missense_Mutation p.P2188S 0.41 tolerated(0.43) benign(0.245) TCGA-Z2-A8RT-06 3 142511705 142511705 C T TRPC1 Missense_Mutation p.H493Y 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 3 142751780 142751780 C G U2SURP Missense_Mutation p.P589A 0.34 tolerated(0.19) benign(0.131) TCGA-Z2-A8RT-06 3 142751781 142751781 C T U2SURP Missense_Mutation p.P589L 0.35 tolerated(0.22) possibly_damaging(0.521) TCGA-Z2-A8RT-06 3 14547125 14547125 C T GRIP2 Intron 0.39 TCGA-Z2-A8RT-06 3 14566957 14566957 C T GRIP2 RNA 0.37 TCGA-Z2-A8RT-06 3 146159583 146159583 C T PLSCR2 Missense_Mutation p.R297K 0.35 tolerated(0.31) benign(0.008) TCGA-Z2-A8RT-06 3 147131244 147131244 C T ZIC1 Missense_Mutation p.P417L 0.31 tolerated(0.16) benign(0) TCGA-Z2-A8RT-06 3 148781245 148781245 G A HLTF Missense_Mutation p.S378L 0.30 tolerated(0.32) benign(0.012) TCGA-Z2-A8RT-06 3 149459388 149459388 G A COMMD2 Missense_Mutation p.H174Y 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-Z2-A8RT-06 3 151129068 151129068 C T MED12L Silent p.T1936T 0.36 TCGA-Z2-A8RT-06 3 151599104 151599104 C T SUCNR1 Missense_Mutation p.S258L 0.44 deleterious(0) possibly_damaging(0.633) TCGA-Z2-A8RT-06 3 152017873 152017873 G A MBNL1 5'UTR 0.38 TCGA-Z2-A8RT-06 3 154002611 154002611 T G DHX36 Missense_Mutation p.I733L 0.35 tolerated(0.26) benign(0.01) TCGA-Z2-A8RT-06 3 154055544 154055544 T A GPR149 Missense_Mutation p.I714F 0.37 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 3 154147201 154147201 G A GPR149 Silent p.S68S 0.36 TCGA-Z2-A8RT-06 3 154801981 154801981 G A MME Missense_Mutation p.D9N 0.41 deleterious(0.03) benign(0.33) TCGA-Z2-A8RT-06 3 155198887 155198887 C T PLCH1 Missense_Mutation p.G1651D 0.46 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 155203441 155203441 G A PLCH1 Missense_Mutation p.S901L 0.27 tolerated(0.42) benign(0.04) TCGA-Z2-A8RT-06 3 155212247 155212247 T A PLCH1 Nonsense_Mutation p.K640* 0.46 TCGA-Z2-A8RT-06 3 158015851 158015851 G A RSRC1 Missense_Mutation p.G173E 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 3 160219929 160219929 G A KPNA4 Missense_Mutation p.S510L 0.37 tolerated(0.11) benign(0.028) TCGA-Z2-A8RT-06 3 160395720 160395720 G A ARL14 3'UTR 0.37 TCGA-Z2-A8RT-06 3 160395789 160395789 G A ARL14 3'UTR 0.30 TCGA-Z2-A8RT-06 3 16358176 16358176 C T RFTN1 3'UTR 0.47 TCGA-Z2-A8RT-06 3 164714420 164714420 C T SI Missense_Mutation p.G1532D 0.32 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 164733743 164733743 G A SI Silent p.I1295I 0.31 TCGA-Z2-A8RT-06 3 164786945 164786945 C T SI Nonsense_Mutation p.W98* 0.40 TCGA-Z2-A8RT-06 3 164906064 164906064 C T SLITRK3 Missense_Mutation p.G852E 0.41 tolerated_low_confidence(0.11) benign(0.009) TCGA-Z2-A8RT-06 3 164906634 164906634 A G SLITRK3 Missense_Mutation p.V662A 0.40 deleterious(0) benign(0.251) TCGA-Z2-A8RT-06 3 16535272 16535272 G A RFTN1 Silent p.S35S 0.38 TCGA-Z2-A8RT-06 3 16630085 16630085 C T DAZL 3'UTR 0.48 TCGA-Z2-A8RT-06 3 167023664 167023664 C T ZBBX Missense_Mutation p.E498K 0.43 tolerated(0.08) benign(0.276) TCGA-Z2-A8RT-06 3 167023676 167023676 C T ZBBX Missense_Mutation p.E494K 0.32 tolerated(0.11) possibly_damaging(0.625) TCGA-Z2-A8RT-06 3 169540395 169540395 C T LRRIQ4 Missense_Mutation p.S229F 0.40 deleterious(0) probably_damaging(0.964) TCGA-Z2-A8RT-06 3 169644605 169644605 G A SAMD7 Silent p.R185R 0.42 TCGA-Z2-A8RT-06 3 17051826 17051826 G A PLCL2 Missense_Mutation p.E204K 0.43 tolerated(0.06) possibly_damaging(0.573) TCGA-Z2-A8RT-06 3 171965431 171965431 C T FNDC3B Missense_Mutation p.P125S 0.39 tolerated(0.05) possibly_damaging(0.721) TCGA-Z2-A8RT-06 3 172835380 172835380 T C SPATA16 Missense_Mutation p.K48E 0.39 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-Z2-A8RT-06 3 175345103 175345103 C T NAALADL2 Missense_Mutation p.R609C 0.22 deleterious(0.01) benign(0.339) TCGA-Z2-A8RT-06 3 180319964 180319964 C T TTC14 5'UTR 0.44 TCGA-Z2-A8RT-06 3 180322700 180322700 C T TTC14 Silent p.S254S 0.37 TCGA-Z2-A8RT-06 3 180322734 180322734 C T TTC14 Missense_Mutation p.L266F 0.37 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 3 180325568 180325568 C T TTC14 Intron 0.23 TCGA-Z2-A8RT-06 3 183389003 183389003 C T KLHL24 Missense_Mutation p.S469F 0.36 tolerated(0.08) probably_damaging(0.968) TCGA-Z2-A8RT-06 3 183524852 183524852 C T YEATS2 Missense_Mutation p.S1328F 0.54 deleterious(0.03) possibly_damaging(0.898) TCGA-Z2-A8RT-06 3 183777774 183777774 C T HTR3C Missense_Mutation p.P362S 0.42 deleterious(0.02) possibly_damaging(0.772) TCGA-Z2-A8RT-06 3 183822115 183822115 C T HTR3E Missense_Mutation p.S142F 0.55 tolerated_low_confidence(0.27) benign(0.001) TCGA-Z2-A8RT-06 3 18391010 18391010 T C SATB1 Silent p.R680R 0.47 TCGA-Z2-A8RT-06 3 184008402 184008402 C T ECE2 Silent p.I689I 0.38 TCGA-Z2-A8RT-06 3 184104701 184104701 C T CHRD Silent p.P755P 0.29 TCGA-Z2-A8RT-06 3 184588534 184588534 C T VPS8 Nonsense_Mutation p.R559* 0.59 TCGA-Z2-A8RT-06 3 184633161 184633161 C T VPS8 Missense_Mutation p.R761C 0.32 tolerated(0.11) benign(0.059) TCGA-Z2-A8RT-06 3 184922263 184922263 G A EHHADH Missense_Mutation p.P284L 0.39 tolerated(0.09) probably_damaging(0.962) TCGA-Z2-A8RT-06 3 184971815 184971815 C T EHHADH 5'UTR 0.40 TCGA-Z2-A8RT-06 3 185183634 185183634 G A MAP3K13 Silent p.R496R 0.44 TCGA-Z2-A8RT-06 3 186953522 186953522 C T MASP1 Missense_Mutation p.E713K 0.38 tolerated(0.64) benign(0.007) TCGA-Z2-A8RT-06 3 187387008 187387008 C T SST Missense_Mutation p.D66N 0.35 deleterious(0.01) benign(0.069) TCGA-Z2-A8RT-06 3 187419786 187419786 C T RTP2 Nonsense_Mutation p.W44* 0.36 TCGA-Z2-A8RT-06 3 190026129 190026129 G A CLDN1 Silent p.T191T 0.44 TCGA-Z2-A8RT-06 3 191888415 191888415 C T FGF12 Missense_Mutation p.E149K 0.39 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 3 19295215 19295215 T C KCNH8 Missense_Mutation p.F49S 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 3 193019055 193019055 T G ATP13A5 Missense_Mutation p.K907T 0.41 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 3 193032848 193032848 G A ATP13A5 Missense_Mutation p.L691F 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 194081290 194081290 C T LRRC15 Silent p.L167L 0.39 TCGA-Z2-A8RT-06 3 194117809 194117809 G A GP5 Silent p.T401T 0.33 TCGA-Z2-A8RT-06 3 194118240 194118240 G A GP5 Missense_Mutation p.P258S 0.32 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 195516050 195516050 C T MUC4 Missense_Mutation p.G801S 0.34 unknown(0) TCGA-Z2-A8RT-06 3 195517423 195517423 G A MUC4 Missense_Mutation p.T343I 0.30 unknown(0) TCGA-Z2-A8RT-06 3 195594410 195594410 G A TNK2 Missense_Mutation p.P983L 0.50 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-Z2-A8RT-06 3 196311103 196311115 AAGGTCTGCTTAT - FBXO45 Frame_Shift_Del p.K259Tfs*13 0.30 TCGA-Z2-A8RT-06 3 196746598 196746598 G C MFI2 Intron 0.39 TCGA-Z2-A8RT-06 3 197238847 197238847 G A BDH1 Silent p.P317P 0.38 TCGA-Z2-A8RT-06 3 197726134 197726134 C T LMLN Intron 0.36 TCGA-Z2-A8RT-06 3 21478589 21478589 C T ZNF385D Silent p.T182T 0.41 TCGA-Z2-A8RT-06 3 25670595 25670595 G A TOP2B Silent p.F572F 0.37 TCGA-Z2-A8RT-06 3 26751401 26751401 C T LRRC3B Missense_Mutation p.P80S 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 27346391 27346391 C T NEK10 Missense_Mutation p.G292E 0.36 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 3 27436038 27436038 G A SLC4A7 Missense_Mutation p.L1021F 0.37 deleterious(0.03) possibly_damaging(0.551) TCGA-Z2-A8RT-06 3 28562586 28562586 G A ZCWPW2 Silent p.E296E 0.30 TCGA-Z2-A8RT-06 3 30713833 30713833 C T TGFBR2 Silent p.L411L 0.41 TCGA-Z2-A8RT-06 3 32411501 32411501 C T CMTM8 3'UTR 0.34 TCGA-Z2-A8RT-06 3 32915402 32915402 G A TRIM71 Silent p.Q315Q 0.41 TCGA-Z2-A8RT-06 3 35725650 35725650 C T ARPP21 Intron 0.31 TCGA-Z2-A8RT-06 3 36873392 36873392 C T TRANK1 Missense_Mutation p.R2517Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 3 36873780 36873780 G A TRANK1 Missense_Mutation p.R2388C 0.40 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 3 36873781 36873781 G A TRANK1 Silent p.F2387F 0.43 TCGA-Z2-A8RT-06 3 36874347 36874347 G A TRANK1 Missense_Mutation p.P2199S 0.28 tolerated(0.17) benign(0.057) TCGA-Z2-A8RT-06 3 36879994 36879994 C T TRANK1 Missense_Mutation p.E1752K 0.43 tolerated(0.15) benign(0.023) TCGA-Z2-A8RT-06 3 37035017 37035017 C T MLH1 5'UTR 0.38 TCGA-Z2-A8RT-06 3 38266147 38266147 C T OXSR1 Missense_Mutation p.S263L 0.33 deleterious(0.01) possibly_damaging(0.506) TCGA-Z2-A8RT-06 3 38278349 38278349 C T OXSR1 Missense_Mutation p.S324F 0.51 deleterious(0) probably_damaging(0.927) TCGA-Z2-A8RT-06 3 383711 383711 C T CHL1 Missense_Mutation p.P209S 0.42 tolerated(0.1) probably_damaging(1) TCGA-Z2-A8RT-06 3 38622848 38622848 G A SCN5A Silent p.F934F 0.30 TCGA-Z2-A8RT-06 3 38739302 38739302 G A SCN10A Silent p.I1803I 0.39 TCGA-Z2-A8RT-06 3 3888280 3888280 T G LRRN1 Missense_Mutation p.F652C 0.47 tolerated(0.07) benign(0.015) TCGA-Z2-A8RT-06 3 38913061 38913061 C T SCN11A Missense_Mutation p.D1212N 0.41 tolerated(0.3) benign(0.009) TCGA-Z2-A8RT-06 3 38946804 38946804 G A SCN11A Silent p.L494L 0.47 TCGA-Z2-A8RT-06 3 39230557 39230557 G A XIRP1 Missense_Mutation p.S127F 0.41 deleterious(0) possibly_damaging(0.883) TCGA-Z2-A8RT-06 3 39307917 39307917 G A CX3CR1 Silent p.V60V 0.44 TCGA-Z2-A8RT-06 3 39374865 39374865 C T CCR8 Missense_Mutation p.S348F 0.46 deleterious(0.01) benign(0.005) TCGA-Z2-A8RT-06 3 40433375 40433375 T C ENTPD3 Intron 0.41 TCGA-Z2-A8RT-06 3 42264742 42264742 C T TRAK1 Missense_Mutation p.S792F 0.39 tolerated(0.28) possibly_damaging(0.789) TCGA-Z2-A8RT-06 3 42733413 42733413 G A KLHL40 Silent p.R598R 0.33 TCGA-Z2-A8RT-06 3 42916345 42916345 C T CYP8B1 Missense_Mutation p.E322K 0.41 tolerated(0.15) benign(0.007) TCGA-Z2-A8RT-06 3 44926958 44926958 C T TGM4 Missense_Mutation p.S54F 0.30 tolerated(0.09) benign(0.016) TCGA-Z2-A8RT-06 3 46757030 46757030 C T PRSS50 Silent p.L155L 0.32 TCGA-Z2-A8RT-06 3 4714999 4714999 C T ITPR1 Missense_Mutation p.P780L 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-Z2-A8RT-06 3 4725435 4725435 G A ITPR1 Missense_Mutation p.E1136K 0.36 tolerated(0.22) benign(0.079) TCGA-Z2-A8RT-06 3 4730210 4730210 G A ITPR1 Missense_Mutation p.R1230K 0.37 tolerated(0.65) benign(0.001) TCGA-Z2-A8RT-06 3 47883116 47883116 C T DHX30 Silent p.S226S 0.31 TCGA-Z2-A8RT-06 3 48265081 48265081 C T CAMP Missense_Mutation p.A30V 0.57 deleterious(0.01) probably_damaging(0.977) TCGA-Z2-A8RT-06 3 48369824 48369824 C T SPINK8 Missense_Mutation p.G3E 0.33 tolerated(0.6) benign(0.002) TCGA-Z2-A8RT-06 3 4854915 4854915 G A ITPR1 Missense_Mutation p.E2505K 0.35 tolerated(0.62) benign(0.049) TCGA-Z2-A8RT-06 3 48608565 48608565 G A COL7A1 Missense_Mutation p.S2378F 0.48 probably_damaging(0.949) TCGA-Z2-A8RT-06 3 48624062 48624062 C T COL7A1 Missense_Mutation p.D1113N 0.41 unknown(0) TCGA-Z2-A8RT-06 3 48663652 48663652 G A SLC26A6 Missense_Mutation p.S755L 0.33 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 3 49698724 49698724 C T BSN Missense_Mutation p.S3149L 0.38 unknown(0) TCGA-Z2-A8RT-06 3 49928919 49928919 G A MST1R Silent p.I1149I 0.36 TCGA-Z2-A8RT-06 3 49940260 49940260 G A MST1R Silent p.F261F 0.44 TCGA-Z2-A8RT-06 3 50099397 50099397 A T RBM6 Missense_Mutation p.Q814H 0.38 tolerated(0.06) possibly_damaging(0.905) TCGA-Z2-A8RT-06 3 50211681 50211681 C T SEMA3F Silent p.F118F 0.50 TCGA-Z2-A8RT-06 3 50222923 50222923 G A SEMA3F Missense_Mutation p.E502K 0.47 tolerated(0.64) benign(0.309) TCGA-Z2-A8RT-06 3 50225489 50225489 C T SEMA3F Missense_Mutation p.P767S 0.80 tolerated(0.15) benign(0.08) TCGA-Z2-A8RT-06 3 5024782 5024782 C T BHLHE40 Missense_Mutation p.P215L 0.40 tolerated(0.61) benign(0.001) TCGA-Z2-A8RT-06 3 50329993 50329993 A C IFRD2 5'Flank 0.41 TCGA-Z2-A8RT-06 3 51418967 51418967 G A DOCK3 Missense_Mutation p.E2024K 0.44 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-Z2-A8RT-06 3 51738009 51738009 G A TEX264 Missense_Mutation p.A307T 0.45 tolerated_low_confidence(1) benign(0.001) TCGA-Z2-A8RT-06 3 51746518 51746518 C T GRM2 Silent p.I160I 0.38 TCGA-Z2-A8RT-06 3 51746519 51746519 C T GRM2 Missense_Mutation p.P161S 0.38 deleterious(0) probably_damaging(0.954) TCGA-Z2-A8RT-06 3 52472065 52472065 G T SEMA3G Missense_Mutation p.L554I 0.37 tolerated(0.38) benign(0.122) TCGA-Z2-A8RT-06 3 52546377 52546377 G A STAB1 Silent p.G968G 0.40 TCGA-Z2-A8RT-06 3 52558636 52558636 G A NT5DC2 Silent p.A508A 0.54 TCGA-Z2-A8RT-06 3 52563241 52563241 G A NT5DC2 Silent p.T114T 0.44 TCGA-Z2-A8RT-06 3 52692325 52692325 G A PBRM1 Missense_Mutation p.P179S 0.40 tolerated(0.21) possibly_damaging(0.682) TCGA-Z2-A8RT-06 3 52820976 52820976 G A ITIH1 Silent p.R583R 0.43 TCGA-Z2-A8RT-06 3 52966209 52966209 C T SFMBT1 Missense_Mutation p.G190E 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 54661843 54661843 C T CACNA2D3 Silent p.F331F 0.52 TCGA-Z2-A8RT-06 3 56468523 56468523 C T ERC2 Silent p.K171K 0.40 TCGA-Z2-A8RT-06 3 57132392 57132392 C T IL17RD Missense_Mutation p.G447R 0.46 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 3 57902847 57902847 A G SLMAP Intron 0.45 TCGA-Z2-A8RT-06 3 58196525 58196525 C T DNASE1L3 Missense_Mutation p.E37K 0.37 tolerated(0.79) benign(0.232) TCGA-Z2-A8RT-06 3 58739499 58739499 G A C3orf67 Nonsense_Mutation p.Q526* 0.42 TCGA-Z2-A8RT-06 3 60522612 60522612 C T FHIT Silent p.R28R 0.33 TCGA-Z2-A8RT-06 3 62501819 62501819 C T CADPS Silent p.E832E 0.40 TCGA-Z2-A8RT-06 3 63981187 63981187 C T ATXN7 Silent p.I563I 0.35 TCGA-Z2-A8RT-06 3 64619219 64619219 G A ADAMTS9 Nonsense_Mutation p.R702* 0.39 TCGA-Z2-A8RT-06 3 68593678 68593678 G A FAM19A1 3'UTR 0.39 TCGA-Z2-A8RT-06 3 68802140 68802140 C T FAM19A4 Missense_Mutation p.E54K 0.43 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 3 7188344 7188344 C T GRM7 Missense_Mutation p.S242F 0.42 deleterious(0) probably_damaging(0.958) TCGA-Z2-A8RT-06 3 72957572 72957572 C T GXYLT2 Silent p.I110I 0.41 TCGA-Z2-A8RT-06 3 73433045 73433045 G A PDZRN3 Missense_Mutation p.S891L 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 3 7348293 7348293 C T GRM7 Silent p.I329I 0.38 TCGA-Z2-A8RT-06 3 7620144 7620144 G A GRM7 Silent p.E517E 0.31 TCGA-Z2-A8RT-06 3 81586139 81586139 G A GBE1 Missense_Mutation p.R576C 0.39 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 87017836 87017836 T A VGLL3 Nonsense_Mutation p.K281* 0.43 TCGA-Z2-A8RT-06 3 8787434 8787434 G A CAV3 Missense_Mutation p.E113K 0.54 tolerated(0.18) probably_damaging(0.996) TCGA-Z2-A8RT-06 3 8809346 8809346 A T OXTR Silent p.S176S 0.38 TCGA-Z2-A8RT-06 3 8809347 8809347 G A OXTR Missense_Mutation p.S176F 0.37 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 3 8983234 8983234 G A RAD18 Missense_Mutation p.S174F 0.42 tolerated(0.25) benign(0.006) TCGA-Z2-A8RT-06 3 9506293 9506293 C T SETD5 Silent p.L887L 0.34 TCGA-Z2-A8RT-06 3 96963089 96963089 C T EPHA6 Missense_Mutation p.P522S 0.35 tolerated(0.06) possibly_damaging(0.487) TCGA-Z2-A8RT-06 3 97311463 97311463 C T EPHA6 Silent p.F798F 0.30 TCGA-Z2-A8RT-06 3 97673317 97673317 G A MINA Missense_Mutation p.P235L 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 3 97851649 97851649 C T OR5H1 Silent p.L36L 0.31 TCGA-Z2-A8RT-06 3 9785962 9785962 C T BRPF1 Missense_Mutation p.S897L 0.44 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 4 100334196 100334196 C T ADH7 3'UTR 0.57 TCGA-Z2-A8RT-06 4 100530068 100530068 C T MTTP Missense_Mutation p.P568L 0.58 deleterious(0.01) probably_damaging(0.978) TCGA-Z2-A8RT-06 4 100784937 100784937 C T DAPP1 Missense_Mutation p.P204L 0.35 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 4 104510765 104510765 G A TACR3 3'UTR 0.73 TCGA-Z2-A8RT-06 4 10522417 10522417 C T CLNK Missense_Mutation p.R257K 0.31 tolerated(0.17) benign(0.16) TCGA-Z2-A8RT-06 4 106156940 106156940 G A TET2 Missense_Mutation p.G614E 0.66 tolerated(0.06) benign(0.085) TCGA-Z2-A8RT-06 4 106156941 106156941 G A TET2 Silent p.G614G 0.66 TCGA-Z2-A8RT-06 4 106888554 106888554 G A NPNT Missense_Mutation p.G549S 0.65 deleterious(0.04) benign(0.126) TCGA-Z2-A8RT-06 4 106967666 106967666 G A TBCK 3'UTR 0.89 TCGA-Z2-A8RT-06 4 108566108 108566108 G A PAPSS1 Silent p.H452H 0.58 TCGA-Z2-A8RT-06 4 111412313 111412313 G A ENPEP Missense_Mutation p.G304E 0.59 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 4 115589351 115589351 G A UGT8 Missense_Mutation p.D385N 0.75 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 4 115767076 115767076 G A NDST4 Missense_Mutation p.S673L 0.66 deleterious(0.01) probably_damaging(0.985) TCGA-Z2-A8RT-06 4 118975208 118975208 C T NDST3 Missense_Mutation p.S48L 0.59 tolerated_low_confidence(0.24) benign(0.002) TCGA-Z2-A8RT-06 4 119951401 119951401 G A SYNPO2 Missense_Mutation p.G491R 0.80 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 122301545 122301545 G A QRFPR Silent p.S86S 0.59 TCGA-Z2-A8RT-06 4 122853707 122853707 G A TRPC3 Missense_Mutation p.P236S 0.55 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 123156062 123156062 C T KIAA1109 Missense_Mutation p.P1153L 0.64 probably_damaging(0.999) TCGA-Z2-A8RT-06 4 126369711 126369711 C T FAT4 Missense_Mutation p.H2514Y 0.65 benign(0.428) TCGA-Z2-A8RT-06 4 126370677 126370677 G A FAT4 Missense_Mutation p.E2836K 0.66 probably_damaging(0.999) TCGA-Z2-A8RT-06 4 138452407 138452407 C T PCDH18 Missense_Mutation p.G279E 0.75 deleterious(0) probably_damaging(0.976) TCGA-Z2-A8RT-06 4 141583072 141583072 C T TBC1D9 Missense_Mutation p.R593Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 4 146080783 146080783 G A OTUD4 Silent p.L102L 0.62 TCGA-Z2-A8RT-06 4 147795928 147795928 T G TTC29 Missense_Mutation p.N247H 0.36 deleterious(0) possibly_damaging(0.827) TCGA-Z2-A8RT-06 4 148457071 148457071 T G EDNRA Missense_Mutation p.F264V 0.39 deleterious(0) probably_damaging(0.968) TCGA-Z2-A8RT-06 4 148463811 148463811 C T EDNRA 3'UTR 0.30 TCGA-Z2-A8RT-06 4 148594154 148594154 A T PRMT10 Missense_Mutation p.H233Q 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-Z2-A8RT-06 4 149356447 149356447 G A NR3C2 Silent p.S522S 0.26 TCGA-Z2-A8RT-06 4 149357039 149357039 G A NR3C2 Missense_Mutation p.P325L 0.27 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-Z2-A8RT-06 4 151821331 151821331 G A LRBA Silent p.F598F 0.18 TCGA-Z2-A8RT-06 4 153565592 153565592 C T TMEM154 Missense_Mutation p.E123K 0.58 deleterious(0) benign(0.002) TCGA-Z2-A8RT-06 4 154541986 154541986 C T KIAA0922 Nonsense_Mutation p.R1216* 0.28 TCGA-Z2-A8RT-06 4 155506659 155506659 G A FGA Intron 0.40 TCGA-Z2-A8RT-06 4 158065008 158065008 C T GLRB Silent p.G267G 0.73 TCGA-Z2-A8RT-06 4 158254102 158254102 G A GRIA2 Nonsense_Mutation p.W338* 0.60 TCGA-Z2-A8RT-06 4 15839757 15839757 G A CD38 Missense_Mutation p.G210R 0.68 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 162463807 162463807 T G FSTL5 Silent p.R352R 0.69 TCGA-Z2-A8RT-06 4 166262940 166262940 C T MSMO1 Missense_Mutation p.P242S 0.57 deleterious(0) probably_damaging(0.978) TCGA-Z2-A8RT-06 4 169204685 169204685 G A DDX60 Missense_Mutation p.S545L 0.62 deleterious(0) possibly_damaging(0.87) TCGA-Z2-A8RT-06 4 169611777 169611777 G A PALLD Silent p.A453A 0.67 TCGA-Z2-A8RT-06 4 169812165 169812165 G A PALLD Missense_Mutation p.R686Q 0.57 deleterious(0) probably_damaging(0.934) TCGA-Z2-A8RT-06 4 173961237 173961237 C T GALNTL6 Missense_Mutation p.H598Y 0.71 tolerated_low_confidence(0.45) benign(0) TCGA-Z2-A8RT-06 4 175897696 175897696 G A ADAM29 Missense_Mutation p.M340I 0.67 deleterious(0.02) possibly_damaging(0.838) TCGA-Z2-A8RT-06 4 175898197 175898197 G A ADAM29 Silent p.R507R 0.76 TCGA-Z2-A8RT-06 4 184367876 184367876 C T CDKN2AIP Missense_Mutation p.P347S 0.68 tolerated(0.08) unknown(0) TCGA-Z2-A8RT-06 4 184367877 184367877 C T CDKN2AIP Missense_Mutation p.P347L 0.68 deleterious(0.02) unknown(0) TCGA-Z2-A8RT-06 4 184930769 184930769 G A STOX2 Missense_Mutation p.E260K 0.44 tolerated(0.08) possibly_damaging(0.813) TCGA-Z2-A8RT-06 4 187519213 187519213 G A FAT1 Missense_Mutation p.S4057F 0.68 possibly_damaging(0.498) TCGA-Z2-A8RT-06 4 187519214 187519214 A G FAT1 Missense_Mutation p.S4057P 0.71 benign(0.224) TCGA-Z2-A8RT-06 4 20258316 20258316 C T SLIT2 Silent p.I67I 0.65 TCGA-Z2-A8RT-06 4 25005849 25005849 G A LGI2 Nonsense_Mutation p.Q288* 0.68 TCGA-Z2-A8RT-06 4 25819773 25819773 C T SEL1L3 Missense_Mutation p.M517I 0.73 tolerated(0.13) benign(0.001) TCGA-Z2-A8RT-06 4 26417114 26417114 C T RBPJ Missense_Mutation p.P71L 0.60 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 4 2990471 2990471 C T GRK4 Missense_Mutation p.L56F 0.57 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 4 37962090 37962090 G A PTTG2 Missense_Mutation p.G12E 0.84 tolerated(0.09) benign(0.149) TCGA-Z2-A8RT-06 4 39116968 39116968 C T KLHL5 Intron 0.75 TCGA-Z2-A8RT-06 4 39436139 39436139 T C KLB Missense_Mutation p.F379L 0.67 tolerated(0.17) possibly_damaging(0.524) TCGA-Z2-A8RT-06 4 47560285 47560285 C T ATP10D Missense_Mutation p.S810F 0.08 deleterious(0.01) possibly_damaging(0.824) TCGA-Z2-A8RT-06 4 47685790 47685790 C T CORIN Missense_Mutation p.G327R 0.45 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 47746434 47746434 C T CORIN Missense_Mutation p.E262K 0.09 tolerated(0.48) benign(0.199) TCGA-Z2-A8RT-06 4 48073677 48073677 C T TXK Missense_Mutation p.E458K 0.49 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 48563632 48563632 G A FRYL Missense_Mutation p.R1240C 0.61 tolerated(0.19) probably_damaging(0.932) TCGA-Z2-A8RT-06 4 49005997 49005997 G A CWH43 Missense_Mutation p.D350N 0.11 tolerated(0.11) possibly_damaging(0.784) TCGA-Z2-A8RT-06 4 62598912 62598912 G A LPHN3 Missense_Mutation p.E279K 0.65 deleterious(0.04) probably_damaging(0.999) TCGA-Z2-A8RT-06 4 69093783 69093783 G A TMPRSS11B Missense_Mutation p.S366F 0.55 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 69188589 69188589 G A YTHDC1 Silent p.P493P 0.59 TCGA-Z2-A8RT-06 4 69403421 69403421 C T UGT2B17 Missense_Mutation p.M505I 0.58 tolerated(0.53) benign(0) TCGA-Z2-A8RT-06 4 70359559 70359559 C T UGT2B4 Missense_Mutation p.G241E 0.54 deleterious(0.01) possibly_damaging(0.542) TCGA-Z2-A8RT-06 4 70455305 70455305 G A UGT2A1 Nonsense_Mutation p.R623* 0.63 TCGA-Z2-A8RT-06 4 71232663 71232663 C T SMR3A Silent p.F119F 0.68 TCGA-Z2-A8RT-06 4 71657043 71657043 C T RUFY3 Intron 0.76 TCGA-Z2-A8RT-06 4 72994452 72994452 C T NPFFR2 Silent p.F150F 0.68 TCGA-Z2-A8RT-06 4 73012959 73012959 C T NPFFR2 Silent p.P333P 0.67 TCGA-Z2-A8RT-06 4 73012960 73012960 C T NPFFR2 Missense_Mutation p.L334F 0.65 deleterious(0.01) probably_damaging(0.987) TCGA-Z2-A8RT-06 4 73013190 73013190 G A NPFFR2 Silent p.Q410Q 0.69 TCGA-Z2-A8RT-06 4 74357588 74357588 G A AFM Splice_Site p.X282_splice 0.67 TCGA-Z2-A8RT-06 4 75312457 75312457 G A AREG Missense_Mutation p.E90K 0.63 deleterious(0.01) possibly_damaging(0.81) TCGA-Z2-A8RT-06 4 77250083 77250083 G A CCDC158 Missense_Mutation p.P990S 0.66 tolerated(0.62) probably_damaging(0.994) TCGA-Z2-A8RT-06 4 77305562 77305562 C T CCDC158 Silent p.R135R 0.57 TCGA-Z2-A8RT-06 4 79254457 79254457 G A FRAS1 Silent p.G723G 0.71 TCGA-Z2-A8RT-06 4 80327757 80327757 C T GK2 Missense_Mutation p.G533E 0.52 deleterious(0) possibly_damaging(0.796) TCGA-Z2-A8RT-06 4 80328558 80328558 C T GK2 Missense_Mutation p.G266E 0.51 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 4 81123237 81123237 C T PRDM8 Silent p.G207G 0.07 TCGA-Z2-A8RT-06 4 84376913 84376913 G A HELQ 5'UTR 0.69 TCGA-Z2-A8RT-06 4 85738730 85738730 G A WDFY3 Nonsense_Mutation p.R568* 0.69 TCGA-Z2-A8RT-06 4 8589064 8589064 G A GPR78 Missense_Mutation p.D356N 0.77 deleterious_low_confidence(0.01) possibly_damaging(0.737) TCGA-Z2-A8RT-06 4 88583408 88583408 G A DMP1 Missense_Mutation p.D160N 0.86 tolerated(0.08) probably_damaging(0.999) TCGA-Z2-A8RT-06 4 8869692 8869692 C T HMX1 Nonsense_Mutation p.W258* 0.62 TCGA-Z2-A8RT-06 4 89415313 89415313 C T HERC5 Intron 0.64 TCGA-Z2-A8RT-06 4 9828201 9828201 G A SLC2A9 Silent p.F481F 0.65 TCGA-Z2-A8RT-06 4 98633937 98633937 C T STPG2 Silent p.R411R 0.31 TCGA-Z2-A8RT-06 5 102465260 102465260 C T PPIP5K2 5'UTR 0.54 TCGA-Z2-A8RT-06 5 102894727 102894727 G A NUDT12 Missense_Mutation p.P217S 0.34 tolerated(0.76) benign(0.001) TCGA-Z2-A8RT-06 5 110407426 110407426 A G TSLP 5'UTR 0.53 TCGA-Z2-A8RT-06 5 110411897 110411897 T A TSLP 3'Flank 0.45 TCGA-Z2-A8RT-06 5 110784827 110784827 C T CAMK4 Missense_Mutation p.A184V 0.58 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 5 11346612 11346612 C T CTNND2 Silent p.A500A 0.43 TCGA-Z2-A8RT-06 5 114588863 114588863 T A PGGT1B Missense_Mutation p.Y77F 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 5 115341655 115341655 C T AQPEP Missense_Mutation p.S695F 0.30 tolerated(0.42) benign(0.015) TCGA-Z2-A8RT-06 5 121297675 121297675 C T SRFBP1 5'UTR 0.42 TCGA-Z2-A8RT-06 5 1213578 1213578 G A SLC6A19 Missense_Mutation p.A222T 0.44 deleterious(0.01) possibly_damaging(0.895) TCGA-Z2-A8RT-06 5 1216790 1216790 C T SLC6A19 Silent p.D335D 0.33 TCGA-Z2-A8RT-06 5 1221274 1221274 A G SLC6A19 Missense_Mutation p.K516R 0.32 tolerated(0.25) benign(0.012) TCGA-Z2-A8RT-06 5 122713160 122713160 G A CEP120 Missense_Mutation p.R756C 0.43 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 5 126171963 126171963 C T LMNB1 3'UTR 0.44 TCGA-Z2-A8RT-06 5 126860598 126860598 C T PRRC1 Missense_Mutation p.A160V 0.30 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-Z2-A8RT-06 5 126993521 126993521 C A CTXN3 3'UTR 0.41 TCGA-Z2-A8RT-06 5 127645737 127645737 C T FBN2 Missense_Mutation p.G1713E 0.37 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 5 127730894 127730894 C T FBN2 Silent p.T384T 0.32 TCGA-Z2-A8RT-06 5 128956333 128956333 G A ADAMTS19 Missense_Mutation p.D495N 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 5 132061894 132061894 G A KIF3A Nonsense_Mutation p.R146* 0.35 TCGA-Z2-A8RT-06 5 135382174 135382174 C T TGFBI Missense_Mutation p.S150F 0.56 tolerated(0.07) benign(0.009) TCGA-Z2-A8RT-06 5 135610396 135610396 G A TRPC7 Missense_Mutation p.L365F 0.46 tolerated(0.09) benign(0.285) TCGA-Z2-A8RT-06 5 136314293 136314293 G A SPOCK1 3'UTR 0.42 TCGA-Z2-A8RT-06 5 13692152 13692152 C T DNAH5 Missense_Mutation p.A4606T 0.42 possibly_damaging(0.787) TCGA-Z2-A8RT-06 5 13700950 13700950 G A DNAH5 Silent p.L4508L 0.38 TCGA-Z2-A8RT-06 5 137257351 137257351 G A PKD2L2 Missense_Mutation p.G452E 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 5 13727761 13727761 G A DNAH5 Missense_Mutation p.S3963L 0.38 possibly_damaging(0.651) TCGA-Z2-A8RT-06 5 13753547 13753547 G A DNAH5 Missense_Mutation p.P3556L 0.37 possibly_damaging(0.713) TCGA-Z2-A8RT-06 5 137548860 137548860 G A CDC23 Silent p.L48L 0.35 TCGA-Z2-A8RT-06 5 13762990 13762990 G A DNAH5 Silent p.I3374I 0.45 TCGA-Z2-A8RT-06 5 13829810 13829810 G A DNAH5 Missense_Mutation p.P2085S 0.38 possibly_damaging(0.876) TCGA-Z2-A8RT-06 5 13830773 13830773 C T DNAH5 Silent p.G1998G 0.30 TCGA-Z2-A8RT-06 5 13900490 13900490 G A DNAH5 Missense_Mutation p.S695L 0.38 possibly_damaging(0.637) TCGA-Z2-A8RT-06 5 139508159 139508159 C T IGIP Missense_Mutation p.P33L 0.33 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-Z2-A8RT-06 5 140011465 140011465 G A CD14 Silent p.L368L 0.42 TCGA-Z2-A8RT-06 5 140182658 140182658 C T PCDHA3 Silent p.L626L 0.34 TCGA-Z2-A8RT-06 5 140202183 140202183 G A PCDHA5 Missense_Mutation p.E275K 0.41 tolerated_low_confidence(0.08) benign(0.381) TCGA-Z2-A8RT-06 5 140222516 140222516 C T PCDHA8 Missense_Mutation p.A537V 0.76 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-Z2-A8RT-06 5 140223265 140223265 G A PCDHA8 Missense_Mutation p.E787K 0.74 tolerated_low_confidence(0.15) benign(0.048) TCGA-Z2-A8RT-06 5 140227974 140227974 C T PCDHA9 5'UTR 0.77 TCGA-Z2-A8RT-06 5 140256072 140256072 G A PCDHA12 Missense_Mutation p.E339K 0.49 tolerated_low_confidence(0.4) benign(0.079) TCGA-Z2-A8RT-06 5 140262587 140262587 C T PCDHA13 Missense_Mutation p.S245F 0.39 tolerated_low_confidence(0.12) benign(0.038) TCGA-Z2-A8RT-06 5 140263609 140263609 G A PCDHA13 Missense_Mutation p.G586S 0.37 tolerated_low_confidence(0.06) benign(0.052) TCGA-Z2-A8RT-06 5 140306596 140306596 C T PCDHAC1 Missense_Mutation p.S40F 0.37 deleterious(0) benign(0.4) TCGA-Z2-A8RT-06 5 140306983 140306983 T A PCDHAC1 Missense_Mutation p.F169Y 0.38 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 5 140347843 140347843 G A PCDHAC2 Missense_Mutation p.E498K 0.37 tolerated(0.79) benign(0.063) TCGA-Z2-A8RT-06 5 140431167 140431167 G A PCDHB1 Missense_Mutation p.E38K 0.36 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 5 140433477 140433477 G A PCDHB1 Missense_Mutation p.E808K 0.40 tolerated_low_confidence(0.09) benign(0.001) TCGA-Z2-A8RT-06 5 140474260 140474260 G A PCDHB2 5'UTR 0.60 TCGA-Z2-A8RT-06 5 140480795 140480795 G A PCDHB3 Missense_Mutation p.G188R 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.605) TCGA-Z2-A8RT-06 5 140480878 140480878 G A PCDHB3 Silent p.L215L 0.33 TCGA-Z2-A8RT-06 5 140482100 140482100 G A PCDHB3 Missense_Mutation p.E623K 0.36 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-Z2-A8RT-06 5 140502182 140502182 G A PCDHB4 Missense_Mutation p.R201Q 0.37 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-Z2-A8RT-06 5 140503930 140503930 G A PCDHB4 Missense_Mutation p.E784K 0.37 tolerated_low_confidence(0.07) benign(0.013) TCGA-Z2-A8RT-06 5 140514922 140514922 C T PCDHB5 5'UTR 0.46 TCGA-Z2-A8RT-06 5 140515425 140515425 G A PCDHB5 Missense_Mutation p.E137K 0.44 tolerated_low_confidence(0.05) benign(0.01) TCGA-Z2-A8RT-06 5 140516838 140516838 G A PCDHB5 Missense_Mutation p.A608T 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-Z2-A8RT-06 5 140554625 140554625 T C PCDHB7 Silent p.L737L 0.11 TCGA-Z2-A8RT-06 5 140554845 140554845 G A PCDHB7 3'UTR 0.07 TCGA-Z2-A8RT-06 5 140557659 140557659 T G PCDHB8 Missense_Mutation p.L15R 0.10 deleterious_low_confidence(0) benign(0.005) TCGA-Z2-A8RT-06 5 140557665 140557665 C T PCDHB8 Missense_Mutation p.S17F 0.11 tolerated_low_confidence(0.62) benign(0) TCGA-Z2-A8RT-06 5 140558228 140558228 G A PCDHB8 Missense_Mutation p.E205K 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-Z2-A8RT-06 5 140558530 140558530 G A PCDHB8 Silent p.K305K 0.11 TCGA-Z2-A8RT-06 5 140563511 140563511 C T PCDHB16 Silent p.F459F 0.41 TCGA-Z2-A8RT-06 5 140572525 140572525 C T PCDHB10 Nonsense_Mutation p.Q134* 0.38 TCGA-Z2-A8RT-06 5 140573662 140573662 C T PCDHB10 Silent p.L513L 0.17 TCGA-Z2-A8RT-06 5 140579996 140579996 G A PCDHB11 Missense_Mutation p.G217S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-Z2-A8RT-06 5 140580457 140580457 C T PCDHB11 Silent p.I370I 0.38 TCGA-Z2-A8RT-06 5 140593810 140593810 G A PCDHB13 Missense_Mutation p.E39K 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 5 140595798 140595798 C T PCDHB13 Silent p.F701F 0.40 TCGA-Z2-A8RT-06 5 140596247 140596247 C T PCDHB13 3'UTR 0.60 TCGA-Z2-A8RT-06 5 140604233 140604233 C T PCDHB14 Nonsense_Mutation p.Q386* 0.38 TCGA-Z2-A8RT-06 5 140616440 140616440 C T PCDHB18 RNA 0.51 TCGA-Z2-A8RT-06 5 140718581 140718581 C T PCDHGA2 Silent p.L15L 0.38 TCGA-Z2-A8RT-06 5 140724030 140724030 G A PCDHGA3 Missense_Mutation p.E144K 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-Z2-A8RT-06 5 140735633 140735633 C T PCDHGA4 Missense_Mutation p.S289L 0.40 tolerated_low_confidence(0.24) benign(0.139) TCGA-Z2-A8RT-06 5 140740600 140740600 G A PCDHGB2 Missense_Mutation p.E300K 0.62 tolerated(0.13) benign(0.111) TCGA-Z2-A8RT-06 5 140745286 140745286 A T PCDHGA5 Missense_Mutation p.E463D 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 5 140745668 140745668 G A PCDHGA5 Missense_Mutation p.V591M 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 5 140772780 140772780 C T PCDHGA8 Nonsense_Mutation p.Q134* 0.32 TCGA-Z2-A8RT-06 5 140812599 140812599 C T PCDHGA12 Missense_Mutation p.S758F 0.34 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-Z2-A8RT-06 5 141035236 141035236 G A ARAP3 Silent p.I1354I 0.35 TCGA-Z2-A8RT-06 5 141036335 141036335 G A ARAP3 Missense_Mutation p.S1202F 0.37 tolerated(0.13) benign(0.102) TCGA-Z2-A8RT-06 5 141050864 141050864 G A ARAP3 Missense_Mutation p.P653L 0.34 tolerated(0.36) benign(0.001) TCGA-Z2-A8RT-06 5 142586867 142586867 C T ARHGAP26 Missense_Mutation p.P698L 0.41 tolerated(0.2) possibly_damaging(0.713) TCGA-Z2-A8RT-06 5 143853600 143853600 A C KCTD16 Missense_Mutation p.K404Q 0.37 deleterious(0) benign(0.323) TCGA-Z2-A8RT-06 5 145608566 145608566 C T RBM27 Missense_Mutation p.P121S 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-Z2-A8RT-06 5 145631402 145631402 C T RBM27 Missense_Mutation p.H470Y 0.30 tolerated(0.76) benign(0.007) TCGA-Z2-A8RT-06 5 145894559 145894559 C T GPR151 Missense_Mutation p.G373E 0.40 tolerated(1) benign(0) TCGA-Z2-A8RT-06 5 146030266 146030266 C T PPP2R2B Missense_Mutation p.D160N 0.40 deleterious(0.05) benign(0.021) TCGA-Z2-A8RT-06 5 146257714 146257714 G A PPP2R2B Intron 0.32 TCGA-Z2-A8RT-06 5 147023673 147023673 A T JAKMIP2 Missense_Mutation p.F391Y 0.44 deleterious(0.02) probably_damaging(0.943) TCGA-Z2-A8RT-06 5 147653910 147653910 G A SPINK13 Missense_Mutation p.G24E 0.37 tolerated(1) benign(0.004) TCGA-Z2-A8RT-06 5 147830759 147830759 A T HTR4 Missense_Mutation p.S385T 0.45 tolerated_low_confidence(0.06) benign(0.021) TCGA-Z2-A8RT-06 5 147889323 147889323 C T HTR4 Missense_Mutation p.A258T 0.37 deleterious(0.03) probably_damaging(1) TCGA-Z2-A8RT-06 5 148407122 148407122 G A SH3TC2 Missense_Mutation p.P725S 0.37 tolerated(0.83) benign(0.001) TCGA-Z2-A8RT-06 5 148630007 148630007 C T ABLIM3 Intron 0.47 TCGA-Z2-A8RT-06 5 149310622 149310622 G A PDE6A Missense_Mutation p.S276F 0.41 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 5 149360294 149360294 C T SLC26A2 Missense_Mutation p.P380S 0.38 tolerated(0.33) benign(0.119) TCGA-Z2-A8RT-06 5 149447894 149447894 C T CSF1R Splice_Site p.X504_splice 0.20 TCGA-Z2-A8RT-06 5 149499662 149499662 C T PDGFRB Missense_Mutation p.A871T 0.46 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 5 149500552 149500552 C T PDGFRB Missense_Mutation p.A829T 0.29 deleterious(0) probably_damaging(0.993) TCGA-Z2-A8RT-06 5 149510142 149510142 G A PDGFRB Nonsense_Mutation p.Q443* 0.48 TCGA-Z2-A8RT-06 5 150029936 150029936 C T SYNPO 3'UTR 0.22 TCGA-Z2-A8RT-06 5 150647092 150647092 C T GM2A 3'UTR 0.36 TCGA-Z2-A8RT-06 5 150664208 150664208 C T SLC36A3 Missense_Mutation p.G299D 0.30 deleterious(0) probably_damaging(0.996) TCGA-Z2-A8RT-06 5 150847362 150847362 C T SLC36A1 Missense_Mutation p.S200F 0.45 tolerated(0.21) benign(0.008) TCGA-Z2-A8RT-06 5 151266347 151266347 G A GLRA1 Missense_Mutation p.P63S 0.35 tolerated(0.1) benign(0.159) TCGA-Z2-A8RT-06 5 151784643 151784643 G A NMUR2 Missense_Mutation p.S11F 0.38 deleterious(0) benign(0.06) TCGA-Z2-A8RT-06 5 153065875 153065875 G A GRIA1 Missense_Mutation p.D384N 0.38 tolerated(0.93) benign(0) TCGA-Z2-A8RT-06 5 153144186 153144186 C T GRIA1 Silent p.F682F 0.31 TCGA-Z2-A8RT-06 5 153175127 153175127 G A GRIA1 Intron 0.42 TCGA-Z2-A8RT-06 5 154393919 154393919 C T KIF4B Missense_Mutation p.P167L 0.36 deleterious(0.02) benign(0.297) TCGA-Z2-A8RT-06 5 156378540 156378540 C T TIMD4 Missense_Mutation p.G221E 0.39 tolerated(0.09) probably_damaging(0.968) TCGA-Z2-A8RT-06 5 156590458 156590458 C T FAM71B Missense_Mutation p.G273E 0.41 tolerated(0.37) benign(0.125) TCGA-Z2-A8RT-06 5 156644894 156644894 C T ITK Missense_Mutation p.P158S 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-Z2-A8RT-06 5 156786054 156786054 G A CYFIP2 Silent p.R879R 0.39 TCGA-Z2-A8RT-06 5 156816394 156816394 C T CYFIP2 Silent p.F1109F 0.29 TCGA-Z2-A8RT-06 5 156816406 156816406 C T CYFIP2 Silent p.I1113I 0.32 TCGA-Z2-A8RT-06 5 156957888 156957888 G A ADAM19 Missense_Mutation p.H112Y 0.33 deleterious(0) probably_damaging(0.955) TCGA-Z2-A8RT-06 5 160097493 160097493 C A ATP10B Missense_Mutation p.V218F 0.63 deleterious(0.02) probably_damaging(0.972) TCGA-Z2-A8RT-06 5 168096835 168096835 G A SLIT3 Missense_Mutation p.P1430L 0.34 tolerated(0.12) benign(0.318) TCGA-Z2-A8RT-06 5 169138962 169138962 G A DOCK2 Missense_Mutation p.M502I 0.34 tolerated(0.15) benign(0.065) TCGA-Z2-A8RT-06 5 169508843 169508843 C T DOCK2 Intron 0.35 TCGA-Z2-A8RT-06 5 169535281 169535281 C T FOXI1 Missense_Mutation p.P268L 0.34 tolerated(0.06) benign(0.034) TCGA-Z2-A8RT-06 5 170737338 170737338 C T TLX3 Silent p.S202S 0.46 TCGA-Z2-A8RT-06 5 171471836 171471836 G A STK10 3'UTR 0.36 TCGA-Z2-A8RT-06 5 171777557 171777557 G A SH3PXD2B Silent p.Y274Y 0.31 TCGA-Z2-A8RT-06 5 172745031 172745031 C T STC2 Missense_Mutation p.G243E 0.37 tolerated(1) benign(0.031) TCGA-Z2-A8RT-06 5 17275916 17275916 C T BASP1 Silent p.P197P 0.39 TCGA-Z2-A8RT-06 5 173059 173059 C T PLEKHG4B Silent p.I1010I 0.36 TCGA-Z2-A8RT-06 5 173531263 173531263 C T NSG2 Silent p.F82F 0.36 TCGA-Z2-A8RT-06 5 175915999 175915999 T G FAF2 Missense_Mutation p.F105L 0.41 tolerated(0.16) benign(0.012) TCGA-Z2-A8RT-06 5 177059486 177059486 G A RP11-1277A3.2 Intron 0.39 TCGA-Z2-A8RT-06 5 178194266 178194266 C T AACSP1 RNA 0.50 TCGA-Z2-A8RT-06 5 178199573 178199573 C T AACSP1 RNA 0.48 TCGA-Z2-A8RT-06 5 178359367 178359367 G A ZFP2 Silent p.E351E 0.35 TCGA-Z2-A8RT-06 5 178419010 178419010 C T GRM6 Silent p.V193V 0.44 TCGA-Z2-A8RT-06 5 178503483 178503483 G A ZNF354C Missense_Mutation p.S22N 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-Z2-A8RT-06 5 180166315 180166315 G A OR2Y1 Silent p.F248F 0.39 TCGA-Z2-A8RT-06 5 180219293 180219293 G A MGAT1 Missense_Mutation p.P227S 0.43 benign(0.024) TCGA-Z2-A8RT-06 5 180377434 180377434 G A BTNL8 Missense_Mutation p.E465K 0.81 tolerated(0.83) benign(0.025) TCGA-Z2-A8RT-06 5 19483624 19483624 A T CDH18 Missense_Mutation p.F556L 0.32 deleterious(0.03) benign(0.133) TCGA-Z2-A8RT-06 5 22078655 22078655 C T CDH12 Missense_Mutation p.G44E 0.38 tolerated(0.11) benign(0.002) TCGA-Z2-A8RT-06 5 22078763 22078763 G A CDH12 Missense_Mutation p.S8F 0.36 tolerated(0.7) probably_damaging(0.962) TCGA-Z2-A8RT-06 5 23527703 23527703 G A PRDM9 Missense_Mutation p.E836K 0.36 deleterious(0.03) possibly_damaging(0.743) TCGA-Z2-A8RT-06 5 33642020 33642020 G A ADAMTS12 Missense_Mutation p.P538L 0.35 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 5 35771819 35771819 G A SPEF2 Missense_Mutation p.E1304K 0.38 tolerated(0.36) probably_damaging(0.989) TCGA-Z2-A8RT-06 5 35779344 35779344 C T SPEF2 Missense_Mutation p.P1448L 0.35 tolerated(0.36) benign(0.36) TCGA-Z2-A8RT-06 5 35965884 35965884 G A UGT3A1 Silent p.F149F 0.32 TCGA-Z2-A8RT-06 5 36035986 36035986 G A UGT3A2 Silent p.V462V 0.41 TCGA-Z2-A8RT-06 5 36115190 36115190 A G LMBRD2 Missense_Mutation p.L490P 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 5 36257149 36257149 G A RANBP3L Missense_Mutation p.S291F 0.39 deleterious(0) possibly_damaging(0.775) TCGA-Z2-A8RT-06 5 38496672 38496672 C T LIFR Missense_Mutation p.G566E 0.33 deleterious(0) probably_damaging(0.992) TCGA-Z2-A8RT-06 5 39021164 39021164 C T RICTOR Missense_Mutation p.G58S 0.38 deleterious(0.02) probably_damaging(0.946) TCGA-Z2-A8RT-06 5 39285316 39285316 G A C9 Silent p.F555F 0.30 TCGA-Z2-A8RT-06 5 39311386 39311386 C T C9 Missense_Mutation p.D322N 0.37 deleterious(0.02) probably_damaging(0.987) TCGA-Z2-A8RT-06 5 40852996 40852996 C T CARD6 Missense_Mutation p.P521L 0.38 deleterious(0.01) benign(0.001) TCGA-Z2-A8RT-06 5 40934482 40934482 G A C7 Missense_Mutation p.G65E 0.37 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 5 41000823 41000823 G A MROH2B Missense_Mutation p.S1436L 0.31 deleterious(0.03) probably_damaging(0.944) TCGA-Z2-A8RT-06 5 41005691 41005691 G A MROH2B Missense_Mutation p.S1269L 0.48 tolerated(0.19) benign(0.008) TCGA-Z2-A8RT-06 5 41015543 41015543 C T MROH2B Silent p.Q974Q 0.54 TCGA-Z2-A8RT-06 5 41941496 41941496 C T FBXO4 3'UTR 0.44 TCGA-Z2-A8RT-06 5 43294187 43294187 G A HMGCS1 Missense_Mutation p.S385F 0.39 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 5 45267240 45267240 C T HCN1 Missense_Mutation p.M578I 0.41 deleterious(0.02) possibly_damaging(0.886) TCGA-Z2-A8RT-06 5 5237136 5237136 C T ADAMTS16 Missense_Mutation p.S693F 0.44 deleterious(0) possibly_damaging(0.809) TCGA-Z2-A8RT-06 5 52942214 52942214 C T NDUFS4 Missense_Mutation p.P110L 0.34 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 5 54275168 54275168 G A ESM1 Missense_Mutation p.P183S 0.41 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 5 54623553 54623553 C T SKIV2L2 Missense_Mutation p.P117S 0.37 deleterious(0) possibly_damaging(0.616) TCGA-Z2-A8RT-06 5 5465224 5465224 C T KIAA0947 Missense_Mutation p.S1926F 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-Z2-A8RT-06 5 54945113 54945113 G A SLC38A9 Missense_Mutation p.L328F 0.27 tolerated(0.89) benign(0.008) TCGA-Z2-A8RT-06 5 55407312 55407312 C T ANKRD55 Silent p.K421K 0.48 TCGA-Z2-A8RT-06 5 57750372 57750372 G A PLK2 3'UTR 0.42 TCGA-Z2-A8RT-06 5 61654077 61654077 C T KIF2A Missense_Mutation p.R275C 0.45 tolerated(0.12) probably_damaging(0.988) TCGA-Z2-A8RT-06 5 63256590 63256590 G A HTR1A Silent p.A319A 0.38 TCGA-Z2-A8RT-06 5 639211 639211 C T CEP72 Missense_Mutation p.P405L 0.32 tolerated(0.06) benign(0.132) TCGA-Z2-A8RT-06 5 64814259 64814259 G A CENPK 3'UTR 0.47 TCGA-Z2-A8RT-06 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.33 TCGA-Z2-A8RT-06 5 66084565 66084565 C T MAST4 Silent p.L195L 0.32 TCGA-Z2-A8RT-06 5 66386047 66386047 C T MAST4 Missense_Mutation p.S274L 0.30 probably_damaging(0.986) TCGA-Z2-A8RT-06 5 66460617 66460617 C T MAST4 Silent p.Y1870Y 0.46 TCGA-Z2-A8RT-06 5 66460618 66460618 C T MAST4 Silent p.L1871L 0.45 TCGA-Z2-A8RT-06 5 6753031 6753031 C T PAPD7 Missense_Mutation p.P439S 0.41 tolerated_low_confidence(0.15) benign(0.069) TCGA-Z2-A8RT-06 5 67575497 67575497 C T PIK3R1 Silent p.L190L 0.35 TCGA-Z2-A8RT-06 5 69730804 69730804 C T GTF2H2B RNA 0.19 TCGA-Z2-A8RT-06 5 69733381 69733381 T A GTF2H2B RNA 0.25 TCGA-Z2-A8RT-06 5 70837386 70837386 C T BDP1 Missense_Mutation p.S2043F 0.37 deleterious(0.03) benign(0.016) TCGA-Z2-A8RT-06 5 71648476 71648476 C T PTCD2 Silent p.I279I 0.38 TCGA-Z2-A8RT-06 5 71756848 71756848 G A ZNF366 Missense_Mutation p.A159V 0.43 tolerated_low_confidence(0.42) benign(0.017) TCGA-Z2-A8RT-06 5 72469128 72469128 C T TMEM174 Missense_Mutation p.P20S 0.39 tolerated(0.09) probably_damaging(0.975) TCGA-Z2-A8RT-06 5 73931101 73931101 G A ENC1 Missense_Mutation p.P404S 0.36 deleterious_low_confidence(0.03) probably_damaging(0.932) TCGA-Z2-A8RT-06 5 74043529 74043529 T G GFM2 Missense_Mutation p.K199T 0.53 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 5 7414870 7414870 C T ADCY2 Missense_Mutation p.S132F 0.47 tolerated(0.7) benign(0.008) TCGA-Z2-A8RT-06 5 75505703 75505703 C T SV2C Missense_Mutation p.P302S 0.35 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 5 75886394 75886394 G A IQGAP2 Missense_Mutation p.E268K 0.22 tolerated(0.2) benign(0.028) TCGA-Z2-A8RT-06 5 76171280 76171280 G A S100Z Silent p.G32G 0.34 TCGA-Z2-A8RT-06 5 76173577 76173577 G A S100Z Missense_Mutation p.E74K 0.37 deleterious(0.01) probably_damaging(0.921) TCGA-Z2-A8RT-06 5 76357553 76357553 C T AGGF1 Missense_Mutation p.R624W 0.30 deleterious(0) probably_damaging(0.97) TCGA-Z2-A8RT-06 5 79028946 79028946 C G CMYA5 Missense_Mutation p.S1453C 0.50 probably_damaging(0.984) TCGA-Z2-A8RT-06 5 79031428 79031428 C T CMYA5 Silent p.F2280F 0.32 TCGA-Z2-A8RT-06 5 79032175 79032175 C T CMYA5 Silent p.I2529I 0.36 TCGA-Z2-A8RT-06 5 79033831 79033831 A T CMYA5 Missense_Mutation p.K3081N 0.33 benign(0.065) TCGA-Z2-A8RT-06 5 82837233 82837233 C T VCAN Missense_Mutation p.P2804L 0.25 tolerated(0.14) benign(0.005) TCGA-Z2-A8RT-06 5 83239190 83239190 G A EDIL3 3'UTR 0.42 TCGA-Z2-A8RT-06 5 83239377 83239377 C T EDIL3 Missense_Mutation p.G435E 0.39 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 5 840581 840581 G A ZDHHC11 Intron 0.17 TCGA-Z2-A8RT-06 5 85915220 85915220 T A COX7C Nonsense_Mutation p.C42* 0.36 TCGA-Z2-A8RT-06 5 86672772 86672772 C T RASA1 Silent p.A753A 0.35 TCGA-Z2-A8RT-06 5 87564667 87564667 G A TMEM161B 5'Flank 0.40 TCGA-Z2-A8RT-06 5 9063104 9063104 G A SEMA5A Missense_Mutation p.R805W 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 5 90669540 90669540 G A ARRDC3 Silent p.I383I 0.48 TCGA-Z2-A8RT-06 5 9224997 9224997 C T SEMA5A Silent p.L145L 0.29 TCGA-Z2-A8RT-06 5 92929536 92929536 C T NR2F1 Silent p.I420I 0.42 TCGA-Z2-A8RT-06 5 93076206 93076206 G A POU5F2 3'UTR 0.50 TCGA-Z2-A8RT-06 5 9629301 9629301 G A TAS2R1 Missense_Mutation p.P282S 0.30 tolerated(0.2) benign(0.431) TCGA-Z2-A8RT-06 6 100841614 100841614 G A SIM1 Missense_Mutation p.S440L 0.42 tolerated(0.07) benign(0.207) TCGA-Z2-A8RT-06 6 102483342 102483342 G A GRIK2 Missense_Mutation p.E738K 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 106978075 106978075 T C AIM1 Silent p.L1127L 0.33 TCGA-Z2-A8RT-06 6 106987320 106987320 C T AIM1 Silent p.F1179F 0.43 TCGA-Z2-A8RT-06 6 10764620 10764620 C A MAK 3'UTR 0.41 TCGA-Z2-A8RT-06 6 10791929 10791929 C T MAK Missense_Mutation p.R432K 0.23 tolerated(0.67) benign(0.002) TCGA-Z2-A8RT-06 6 10894373 10894373 G A SYCP2L Missense_Mutation p.R91Q 0.36 tolerated(0.31) benign(0.062) TCGA-Z2-A8RT-06 6 109871425 109871425 G A AK9 Silent p.F944F 0.36 TCGA-Z2-A8RT-06 6 10995297 10995297 G A ELOVL2 Missense_Mutation p.H150Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 6 110620283 110620283 G A METTL24 Missense_Mutation p.P210S 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 110777644 110777644 A C SLC22A16 Intron 0.39 TCGA-Z2-A8RT-06 6 112671387 112671387 C T RFPL4B Silent p.S159S 0.38 TCGA-Z2-A8RT-06 6 114378439 114378439 C T HS3ST5 Silent p.R341R 0.36 TCGA-Z2-A8RT-06 6 116289807 116289807 C T FRK Missense_Mutation p.E188K 0.38 tolerated(0.08) benign(0.081) TCGA-Z2-A8RT-06 6 116757299 116757299 G A DSE Silent p.R556R 0.34 TCGA-Z2-A8RT-06 6 116833461 116833461 C T TRAPPC3L Intron 0.39 TCGA-Z2-A8RT-06 6 116966890 116966890 A G ZUFSP Missense_Mutation p.L559P 0.28 tolerated(1) benign(0) TCGA-Z2-A8RT-06 6 116966891 116966891 G A ZUFSP Silent p.L559L 0.28 TCGA-Z2-A8RT-06 6 117128327 117128327 G A GPRC6A Missense_Mutation p.R181C 0.40 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 6 117632191 117632191 G A ROS1 Silent p.F2075F 0.23 TCGA-Z2-A8RT-06 6 121768300 121768300 G A GJA1 Missense_Mutation p.E103K 0.37 deleterious(0.02) possibly_damaging(0.508) TCGA-Z2-A8RT-06 6 123319259 123319259 C T CLVS2 Missense_Mutation p.H113Y 0.34 tolerated(0.07) possibly_damaging(0.633) TCGA-Z2-A8RT-06 6 127794423 127794423 G A SOGA3 3'UTR 0.40 TCGA-Z2-A8RT-06 6 127796612 127796612 G A SOGA3 Silent p.F853F 0.38 TCGA-Z2-A8RT-06 6 128291341 128291341 T A PTPRK 3'UTR 0.30 TCGA-Z2-A8RT-06 6 128291342 128291342 C T PTPRK 3'UTR 0.30 TCGA-Z2-A8RT-06 6 128291404 128291404 C T PTPRK Missense_Mutation p.D1437N 0.40 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 6 128312438 128312438 C T PTPRK Splice_Site p.X999_splice 0.36 TCGA-Z2-A8RT-06 6 128312439 128312439 C T PTPRK Silent p.R999R 0.27 TCGA-Z2-A8RT-06 6 129609171 129609171 T C LAMA2 Missense_Mutation p.F906S 0.40 deleterious(0) probably_damaging(0.985) TCGA-Z2-A8RT-06 6 129636762 129636762 T G LAMA2 Missense_Mutation p.F1233V 0.32 tolerated(0.11) benign(0.014) TCGA-Z2-A8RT-06 6 130182342 130182342 C T TMEM244 5'UTR 0.33 TCGA-Z2-A8RT-06 6 130762779 130762779 C T TMEM200A Silent p.P404P 0.39 TCGA-Z2-A8RT-06 6 131900261 131900261 G A ARG1 Silent p.V55V 0.31 TCGA-Z2-A8RT-06 6 134210643 134210643 G A TCF21 Silent p.E36E 0.42 TCGA-Z2-A8RT-06 6 135271124 135271124 G A ALDH8A1 Missense_Mutation p.S23L 0.39 tolerated(0.06) benign(0.296) TCGA-Z2-A8RT-06 6 13597244 13597244 C T SIRT5 Missense_Mutation p.P205S 0.29 deleterious(0) probably_damaging(0.986) TCGA-Z2-A8RT-06 6 136599358 136599358 T C BCLAF1 Missense_Mutation p.N221D 0.19 deleterious(0.01) possibly_damaging(0.486) TCGA-Z2-A8RT-06 6 136603779 136603779 C T BCLAF1 5'UTR 0.45 TCGA-Z2-A8RT-06 6 13807219 13807219 G T MCUR1 Missense_Mutation p.S158Y 0.42 deleterious(0.04) benign(0.311) TCGA-Z2-A8RT-06 6 138612978 138612978 C T KIAA1244 Silent p.L1052L 0.71 TCGA-Z2-A8RT-06 6 138655786 138655786 G A KIAA1244 Missense_Mutation p.D1935N 0.35 deleterious(0.02) probably_damaging(0.987) TCGA-Z2-A8RT-06 6 138655797 138655797 C T KIAA1244 Silent p.F1938F 0.40 TCGA-Z2-A8RT-06 6 138655840 138655840 G A KIAA1244 Missense_Mutation p.G1953R 0.40 deleterious(0.04) probably_damaging(0.974) TCGA-Z2-A8RT-06 6 138655841 138655841 G A KIAA1244 Missense_Mutation p.G1953E 0.40 deleterious(0.04) probably_damaging(0.95) TCGA-Z2-A8RT-06 6 139094677 139094677 G A CCDC28A 5'UTR 0.36 TCGA-Z2-A8RT-06 6 139113995 139113995 T C CCDC28A 3'UTR 0.38 TCGA-Z2-A8RT-06 6 139583865 139583865 C T TXLNB Missense_Mutation p.E245K 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-Z2-A8RT-06 6 143091546 143091546 G A HIVEP2 Missense_Mutation p.P1444S 0.40 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 6 144780469 144780469 C T UTRN Missense_Mutation p.R896C 0.36 tolerated(0.09) benign(0.001) TCGA-Z2-A8RT-06 6 149285728 149285728 C T UST Intron 0.51 TCGA-Z2-A8RT-06 6 149395018 149395018 C T UST Silent p.P329P 0.26 TCGA-Z2-A8RT-06 6 149699451 149699451 C T TAB2 Missense_Mutation p.P134S 0.40 tolerated(0.29) possibly_damaging(0.598) TCGA-Z2-A8RT-06 6 152711560 152711560 C T SYNE1 Missense_Mutation p.E2678K 0.12 possibly_damaging(0.818) TCGA-Z2-A8RT-06 6 152765644 152765644 C T SYNE1 Missense_Mutation p.E1247K 0.37 benign(0.119) TCGA-Z2-A8RT-06 6 152804238 152804238 C T SYNE1 Silent p.R444R 0.37 TCGA-Z2-A8RT-06 6 154412643 154412643 G A OPRM1 Intron 0.42 TCGA-Z2-A8RT-06 6 155575144 155575144 G A TIAM2 Silent p.T1421T 0.40 TCGA-Z2-A8RT-06 6 155732417 155732417 C T NOX3 Silent p.R462R 0.46 TCGA-Z2-A8RT-06 6 158505150 158505150 C T SYNJ2 Missense_Mutation p.A1051V 0.40 tolerated(0.22) benign(0.005) TCGA-Z2-A8RT-06 6 158922953 158922953 C T TULP4 Missense_Mutation p.P753L 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 6 159401864 159401864 G A RSPH3 Silent p.L409L 0.33 TCGA-Z2-A8RT-06 6 160239607 160239607 C T PNLDC1 Missense_Mutation p.S382L 0.33 tolerated(0.51) benign(0.002) TCGA-Z2-A8RT-06 6 160328977 160328977 G A MAS1 3'UTR 0.30 TCGA-Z2-A8RT-06 6 160453713 160453713 C T IGF2R Missense_Mutation p.S338F 0.41 deleterious(0.01) possibly_damaging(0.908) TCGA-Z2-A8RT-06 6 160828207 160828207 G A SLC22A3 Nonsense_Mutation p.W223* 0.35 TCGA-Z2-A8RT-06 6 160999712 160999712 C T LPA Silent p.R1438R 0.33 TCGA-Z2-A8RT-06 6 161020548 161020548 C T LPA Missense_Mutation p.E1091K 0.35 tolerated(0.43) benign(0.085) TCGA-Z2-A8RT-06 6 161132118 161132118 C T PLG Missense_Mutation p.S101L 0.43 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 6 161137681 161137681 C T PLG Missense_Mutation p.P225S 0.40 deleterious(0.02) possibly_damaging(0.453) TCGA-Z2-A8RT-06 6 161139379 161139379 G A PLG Missense_Mutation p.E281K 0.41 tolerated(0.14) benign(0.018) TCGA-Z2-A8RT-06 6 161160196 161160196 C T PLG Silent p.F658F 0.31 TCGA-Z2-A8RT-06 6 16327532 16327532 G C ATXN1 Missense_Mutation p.P337R 0.37 deleterious(0.03) benign(0.229) TCGA-Z2-A8RT-06 6 16327742 16327742 G A ATXN1 Missense_Mutation p.P267L 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-Z2-A8RT-06 6 166571986 166571986 G A T Silent p.F375F 0.29 TCGA-Z2-A8RT-06 6 167796359 167796359 C T TCP10 Translation_Start_Site p.M1? 0.31 tolerated_low_confidence(0.12) benign(0.184) TCGA-Z2-A8RT-06 6 168369853 168369853 G A MLLT4 3'Flank 0.45 TCGA-Z2-A8RT-06 6 170110479 170110479 G A PHF10 Silent p.S322S 0.36 TCGA-Z2-A8RT-06 6 170110480 170110480 G C PHF10 Missense_Mutation p.S322C 0.36 deleterious(0.02) probably_damaging(0.969) TCGA-Z2-A8RT-06 6 170591779 170591779 G A DLL1 3'UTR 0.53 TCGA-Z2-A8RT-06 6 17629539 17629539 G A NUP153 Missense_Mutation p.S964L 0.28 deleterious(0.02) benign(0.003) TCGA-Z2-A8RT-06 6 17675575 17675575 G A NUP153 Missense_Mutation p.S203L 0.36 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 6 24302244 24302244 T C DCDC2 Missense_Mutation p.N126S 0.32 tolerated(0.62) benign(0.045) TCGA-Z2-A8RT-06 6 24418443 24418443 T A MRS2 Missense_Mutation p.I323N 0.36 deleterious(0) possibly_damaging(0.837) TCGA-Z2-A8RT-06 6 24596700 24596700 C T KIAA0319 Missense_Mutation p.D68N 0.40 deleterious(0.04) probably_damaging(0.973) TCGA-Z2-A8RT-06 6 25701523 25701523 C T SCGN Missense_Mutation p.S264F 0.40 deleterious(0) possibly_damaging(0.723) TCGA-Z2-A8RT-06 6 25726650 25726650 G A HIST1H2AA Missense_Mutation p.R36C 0.37 deleterious_low_confidence(0.03) benign(0.135) TCGA-Z2-A8RT-06 6 25777210 25777210 C T SLC17A4 Intron 0.33 TCGA-Z2-A8RT-06 6 25915862 25915862 G A SLC17A2 Intron 0.37 TCGA-Z2-A8RT-06 6 25921489 25921489 A G SLC17A2 Missense_Mutation p.L131P 0.35 deleterious(0) probably_damaging(0.956) TCGA-Z2-A8RT-06 6 26250453 26250453 G A HIST1H3F Silent p.L127L 0.40 TCGA-Z2-A8RT-06 6 26501526 26501526 C T BTN1A1 Silent p.F4F 0.48 TCGA-Z2-A8RT-06 6 26502098 26502098 G A BTN1A1 Silent p.G120G 0.36 TCGA-Z2-A8RT-06 6 27100170 27100170 G A HIST1H2BJ Silent p.T120T 0.28 TCGA-Z2-A8RT-06 6 27222846 27222846 C T PRSS16 Missense_Mutation p.S471F 0.33 deleterious(0) probably_damaging(0.942) TCGA-Z2-A8RT-06 6 27222847 27222847 C T PRSS16 Silent p.S471S 0.41 TCGA-Z2-A8RT-06 6 27925746 27925746 C T OR2B6 Missense_Mutation p.S243F 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 28227537 28227537 G A NKAPL Missense_Mutation p.E130K 0.39 deleterious(0) unknown(0) TCGA-Z2-A8RT-06 6 28472271 28472271 G A GPX6 Missense_Mutation p.S155F 0.41 deleterious(0.02) benign(0.173) TCGA-Z2-A8RT-06 6 28478638 28478638 C T GPX6 Missense_Mutation p.G44E 0.41 tolerated(0.53) benign(0.134) TCGA-Z2-A8RT-06 6 28483479 28483479 G A GPX6 Silent p.F14F 0.39 TCGA-Z2-A8RT-06 6 28497246 28497246 G A GPX5 Missense_Mutation p.E36K 0.38 deleterious(0.01) benign(0.001) TCGA-Z2-A8RT-06 6 28540349 28540349 G A SCAND3 Missense_Mutation p.S1106F 0.39 tolerated(0.07) probably_damaging(0.974) TCGA-Z2-A8RT-06 6 28542428 28542428 C T SCAND3 Missense_Mutation p.G685E 0.37 deleterious_low_confidence(0.04) benign(0.005) TCGA-Z2-A8RT-06 6 28542582 28542582 C T SCAND3 Missense_Mutation p.G634R 0.41 deleterious_low_confidence(0) benign(0) TCGA-Z2-A8RT-06 6 29012353 29012353 G A OR2W1 Silent p.F200F 0.40 TCGA-Z2-A8RT-06 6 29274931 29274931 C T OR14J1 Silent p.L155L 0.40 TCGA-Z2-A8RT-06 6 29323370 29323370 G A OR5V1 Silent p.S201S 0.42 TCGA-Z2-A8RT-06 6 29640175 29640175 C T ZFP57 3'UTR 0.54 TCGA-Z2-A8RT-06 6 29644709 29644709 G A ZFP57 Silent p.T24T 0.42 TCGA-Z2-A8RT-06 6 30121959 30121959 G A TRIM10 Silent p.F411F 0.33 TCGA-Z2-A8RT-06 6 30553922 30553922 G A ABCF1 Silent p.T575T 0.32 TCGA-Z2-A8RT-06 6 30627534 30627534 G A DHX16 Silent p.I611I 0.39 TCGA-Z2-A8RT-06 6 30671899 30671906 GGAAGACC - MDC1 Frame_Shift_Del p.R1685Nfs*12 0.30 TCGA-Z2-A8RT-06 6 30864472 30864472 C T DDR1 Missense_Mutation p.P567S 0.45 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 31686744 31686744 G A LY6G6C 3'UTR 0.46 TCGA-Z2-A8RT-06 6 31734479 31734479 G A VWA7 Missense_Mutation p.P649S 0.38 tolerated(0.72) benign(0.006) TCGA-Z2-A8RT-06 6 31777802 31777802 G A HSPA1L 3'UTR 0.35 TCGA-Z2-A8RT-06 6 31838660 31838660 G A SLC44A4 Missense_Mutation p.S289F 0.45 deleterious(0) benign(0.418) TCGA-Z2-A8RT-06 6 32138520 32138520 G A AGPAT1 Intron 0.38 TCGA-Z2-A8RT-06 6 32726822 32726822 G A HLA-DQB2 Missense_Mutation p.P151S 0.22 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 33139497 33139497 C T COL11A2 Missense_Mutation p.G962D 0.43 probably_damaging(0.969) TCGA-Z2-A8RT-06 6 33284589 33284589 G A ZBTB22 Silent p.S35S 0.47 TCGA-Z2-A8RT-06 6 33423611 33423611 C T ZBTB9 Missense_Mutation p.P245L 0.36 tolerated(0.24) benign(0.005) TCGA-Z2-A8RT-06 6 33635739 33635739 C T ITPR3 Silent p.P628P 0.33 TCGA-Z2-A8RT-06 6 33768863 33768863 G A MLN Silent p.F26F 0.41 TCGA-Z2-A8RT-06 6 34508852 34508852 C T SPDEF Silent p.K181K 0.33 TCGA-Z2-A8RT-06 6 35748920 35748920 C T CLPSL1 Silent p.F11F 0.37 TCGA-Z2-A8RT-06 6 36043700 36043700 C T MAPK14 Missense_Mutation p.P191S 0.36 deleterious(0) probably_damaging(0.993) TCGA-Z2-A8RT-06 6 36290121 36290121 C T C6orf222 Missense_Mutation p.G524R 0.44 tolerated(0.19) benign(0.004) TCGA-Z2-A8RT-06 6 36290164 36290164 C T C6orf222 Silent p.V509V 0.44 TCGA-Z2-A8RT-06 6 36339151 36339151 G A ETV7 Missense_Mutation p.S207F 0.25 deleterious(0.01) possibly_damaging(0.897) TCGA-Z2-A8RT-06 6 37426561 37426561 C T CMTR1 Silent p.S317S 0.38 TCGA-Z2-A8RT-06 6 3850756 3850756 C T FAM50B Silent p.F237F 0.42 TCGA-Z2-A8RT-06 6 38750883 38750883 C T DNAH8 Missense_Mutation p.A571V 0.39 possibly_damaging(0.596) TCGA-Z2-A8RT-06 6 38840747 38840747 G A DNAH8 Missense_Mutation p.V2218I 0.35 probably_damaging(0.999) TCGA-Z2-A8RT-06 6 38854674 38854674 G A DNAH8 Missense_Mutation p.M2572I 0.40 probably_damaging(0.999) TCGA-Z2-A8RT-06 6 38897339 38897339 C T DNAH8 Missense_Mutation p.S3507F 0.41 probably_damaging(0.998) TCGA-Z2-A8RT-06 6 38906573 38906573 G A DNAH8 Splice_Site p.X3722_splice 0.33 TCGA-Z2-A8RT-06 6 39047409 39047409 G A GLP1R Missense_Mutation p.M371I 0.41 tolerated(0.12) benign(0.006) TCGA-Z2-A8RT-06 6 39163657 39163657 G A KCNK5 Missense_Mutation p.T98I 0.33 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 39545914 39545914 C T KIF6 Missense_Mutation p.E367K 0.38 deleterious(0) possibly_damaging(0.902) TCGA-Z2-A8RT-06 6 39874455 39874455 C T MOCS1 3'UTR 0.32 TCGA-Z2-A8RT-06 6 40359593 40359593 C T LRFN2 3'UTR 0.25 TCGA-Z2-A8RT-06 6 41197848 41197848 G A TREML4 Missense_Mutation p.G165D 0.42 deleterious(0.03) probably_damaging(0.927) TCGA-Z2-A8RT-06 6 42689761 42689761 G A PRPH2 Silent p.I104I 0.56 TCGA-Z2-A8RT-06 6 42932068 42932068 G A PEX6 3'UTR 0.33 TCGA-Z2-A8RT-06 6 43316179 43316179 G A ZNF318 Silent p.F985F 0.41 TCGA-Z2-A8RT-06 6 43400796 43400796 C T ABCC10 Silent p.L360L 0.43 TCGA-Z2-A8RT-06 6 44147812 44147812 G A CAPN11 Missense_Mutation p.E518K 0.36 deleterious(0.01) benign(0.088) TCGA-Z2-A8RT-06 6 44248120 44248120 C T TCTE1 Missense_Mutation p.G435E 0.38 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 46656693 46656693 C T TDRD6 Silent p.I276I 0.41 TCGA-Z2-A8RT-06 6 46672316 46672316 C T PLA2G7 Missense_Mutation p.G436E 0.42 tolerated_low_confidence(0.14) benign(0.026) TCGA-Z2-A8RT-06 6 46766353 46766353 G A MEP1A Silent p.L52L 0.34 TCGA-Z2-A8RT-06 6 46801112 46801112 G A MEP1A Silent p.L482L 0.44 TCGA-Z2-A8RT-06 6 46802442 46802442 G A MEP1A Silent p.R579R 0.32 TCGA-Z2-A8RT-06 6 46806787 46806787 C T MEP1A Silent p.L719L 0.36 TCGA-Z2-A8RT-06 6 46830784 46830784 C T GPR116 Silent p.G680G 0.36 TCGA-Z2-A8RT-06 6 46977841 46977841 C T GPR110 Missense_Mutation p.G444S 0.35 tolerated(0.16) benign(0.215) TCGA-Z2-A8RT-06 6 47674984 47674984 G A GPR115 Translation_Start_Site p.M1? 0.36 tolerated_low_confidence(0.2) benign(0.001) TCGA-Z2-A8RT-06 6 47682098 47682098 G A GPR115 Missense_Mutation p.E373K 0.45 tolerated(0.85) benign(0.002) TCGA-Z2-A8RT-06 6 49604489 49604489 C T RHAG Missense_Mutation p.E13K 0.43 deleterious(0) possibly_damaging(0.682) TCGA-Z2-A8RT-06 6 49667538 49667538 C T CRISP2 Missense_Mutation p.D84N 0.36 tolerated(0.33) benign(0.004) TCGA-Z2-A8RT-06 6 49700982 49700982 G A CRISP3 Silent p.L172L 0.37 TCGA-Z2-A8RT-06 6 49700983 49700983 A T CRISP3 Missense_Mutation p.L172H 0.37 tolerated(0.16) benign(0.02) TCGA-Z2-A8RT-06 6 52129401 52129401 G A MCM3 Silent p.I849I 0.35 TCGA-Z2-A8RT-06 6 54095572 54095572 C T MLIP Missense_Mutation p.P392S 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-Z2-A8RT-06 6 54245358 54245358 G A TINAG Missense_Mutation p.E429K 0.42 tolerated(0.72) probably_damaging(0.942) TCGA-Z2-A8RT-06 6 54792370 54792370 G A FAM83B Missense_Mutation p.G225E 0.39 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 54806404 54806404 G A FAM83B Missense_Mutation p.E879K 0.26 tolerated(0.05) probably_damaging(0.974) TCGA-Z2-A8RT-06 6 55113471 55113471 G A HCRTR2 Silent p.R86R 0.35 TCGA-Z2-A8RT-06 6 55196519 55196519 G A GFRAL Missense_Mutation p.G10E 0.31 tolerated(0.3) benign(0.11) TCGA-Z2-A8RT-06 6 55216316 55216316 G A GFRAL Silent p.V212V 0.38 TCGA-Z2-A8RT-06 6 55223885 55223885 G A GFRAL Missense_Mutation p.E301K 0.38 deleterious(0.03) possibly_damaging(0.876) TCGA-Z2-A8RT-06 6 55266623 55266623 C T GFRAL Missense_Mutation p.S386L 0.32 tolerated(0.08) benign(0.013) TCGA-Z2-A8RT-06 6 55443854 55443854 G A HMGCLL1 5'UTR 0.53 TCGA-Z2-A8RT-06 6 55638904 55638904 G A BMP5 Nonsense_Mutation p.Q324* 0.36 TCGA-Z2-A8RT-06 6 55935562 55935562 G A COL21A1 Missense_Mutation p.P667L 0.45 tolerated(0.05) benign(0.017) TCGA-Z2-A8RT-06 6 56029286 56029286 C T COL21A1 Missense_Mutation p.D436N 0.21 tolerated(0.13) possibly_damaging(0.76) TCGA-Z2-A8RT-06 6 56044681 56044681 C T COL21A1 Missense_Mutation p.G112E 0.29 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 56336955 56336955 G A DST Missense_Mutation p.P4731S 0.44 probably_damaging(0.999) TCGA-Z2-A8RT-06 6 56883264 56883264 G A BEND6 Missense_Mutation p.R253K 0.33 tolerated(0.43) possibly_damaging(0.861) TCGA-Z2-A8RT-06 6 56918907 56918907 C T KIAA1586 Missense_Mutation p.S537L 0.39 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 6 57372302 57372302 C T PRIM2 Silent p.S236S 0.16 TCGA-Z2-A8RT-06 6 5999431 5999431 C T NRN1 Nonsense_Mutation p.W69* 0.41 TCGA-Z2-A8RT-06 6 62604565 62604565 G A KHDRBS2 Missense_Mutation p.P262L 0.29 tolerated(0.26) benign(0.001) TCGA-Z2-A8RT-06 6 63990652 63990652 G A LGSN Silent p.I268I 0.36 TCGA-Z2-A8RT-06 6 64419084 64419084 C T PHF3 Missense_Mutation p.S1250L 0.35 tolerated(0.06) probably_damaging(0.938) TCGA-Z2-A8RT-06 6 70942391 70942391 G A COL9A1 Missense_Mutation p.P800S 0.42 possibly_damaging(0.675) TCGA-Z2-A8RT-06 6 71235920 71235920 T G FAM135A Missense_Mutation p.S1045A 0.34 tolerated(0.13) benign(0.004) TCGA-Z2-A8RT-06 6 72806693 72806693 G A RIMS1 Missense_Mutation p.R96K 0.39 tolerated(1) benign(0.003) TCGA-Z2-A8RT-06 6 73016982 73016982 G A RIMS1 Missense_Mutation p.R1291Q 0.25 deleterious(0.02) benign(0.02) TCGA-Z2-A8RT-06 6 73834222 73834222 G A KCNQ5 Missense_Mutation p.E412K 0.30 tolerated(0.05) benign(0.011) TCGA-Z2-A8RT-06 6 74079461 74079461 G A OOEP Missense_Mutation p.H19Y 0.36 tolerated(0.86) benign(0.005) TCGA-Z2-A8RT-06 6 74516767 74516767 C G CD109 Missense_Mutation p.T1054S 0.33 tolerated(0.24) benign(0.098) TCGA-Z2-A8RT-06 6 7568073 7568073 G A DSP Silent p.R400R 0.33 TCGA-Z2-A8RT-06 6 75858121 75858121 G A COL12A1 Nonsense_Mutation p.R1414* 0.39 TCGA-Z2-A8RT-06 6 76024791 76024791 C T FILIP1 Missense_Mutation p.E253K 0.41 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 6 76072547 76072547 C T FILIP1 Silent p.E121E 0.40 TCGA-Z2-A8RT-06 6 76591421 76591421 C T MYO6 Nonsense_Mutation p.Q768* 0.44 TCGA-Z2-A8RT-06 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.38 TCGA-Z2-A8RT-06 6 78172857 78172857 G A HTR1B Silent p.I88I 0.41 TCGA-Z2-A8RT-06 6 80720610 80720610 C T TTK Silent p.A183A 0.33 TCGA-Z2-A8RT-06 6 83838631 83838631 C T DOPEY1 Missense_Mutation p.P582L 0.34 tolerated(0.06) benign(0.017) TCGA-Z2-A8RT-06 6 85472312 85472312 C T TBX18 Nonsense_Mutation p.W149* 0.33 TCGA-Z2-A8RT-06 6 86256893 86256893 G A SNX14 Missense_Mutation p.R349C 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-Z2-A8RT-06 6 86332226 86332226 C G SYNCRIP Missense_Mutation p.D328H 0.07 deleterious(0) possibly_damaging(0.862) TCGA-Z2-A8RT-06 6 87965512 87965512 T G ZNF292 Missense_Mutation p.V722G 0.34 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 6 88299713 88299713 C T RARS2 5'UTR 0.42 TCGA-Z2-A8RT-06 6 89790684 89790684 C T PNRC1 Missense_Mutation p.S24F 0.35 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-Z2-A8RT-06 6 90575873 90575873 C T CASP8AP2 RNA 0.35 TCGA-Z2-A8RT-06 6 90604548 90604548 C T GJA10 Missense_Mutation p.P121S 0.29 tolerated(0.24) benign(0.254) TCGA-Z2-A8RT-06 6 90604881 90604881 C T GJA10 Missense_Mutation p.H232Y 0.41 deleterious(0.05) probably_damaging(0.923) TCGA-Z2-A8RT-06 6 90641983 90641983 G A BACH2 3'UTR 0.48 TCGA-Z2-A8RT-06 6 90660157 90660157 G A BACH2 Silent p.F556F 0.33 TCGA-Z2-A8RT-06 6 97063675 97063675 C T FHL5 3'UTR 0.36 TCGA-Z2-A8RT-06 7 100146467 100146467 C T AGFG2 Missense_Mutation p.R82C 0.29 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 100151771 100151771 C T AGFG2 Missense_Mutation p.P214L 0.63 tolerated(0.17) benign(0.002) TCGA-Z2-A8RT-06 7 100184214 100184214 C T FBXO24 5'Flank 0.53 TCGA-Z2-A8RT-06 7 100198263 100198263 G A FBXO24 Missense_Mutation p.R533K 0.30 tolerated_low_confidence(0.35) benign(0) TCGA-Z2-A8RT-06 7 100349703 100349703 G A ZAN Missense_Mutation p.E659K 0.53 possibly_damaging(0.626) TCGA-Z2-A8RT-06 7 100350539 100350539 C T ZAN Silent p.S937S 0.54 TCGA-Z2-A8RT-06 7 100487785 100487785 A C ACHE 3'UTR 0.64 TCGA-Z2-A8RT-06 7 100551777 100551777 C T MUC3A Silent p.I176I 0.40 TCGA-Z2-A8RT-06 7 100675182 100675182 C T MUC17 Missense_Mutation p.A162V 0.57 benign(0.002) TCGA-Z2-A8RT-06 7 100675231 100675231 A C MUC17 Missense_Mutation p.L178F 0.63 benign(0.115) TCGA-Z2-A8RT-06 7 100677398 100677398 G A MUC17 Missense_Mutation p.E901K 0.57 unknown(0) TCGA-Z2-A8RT-06 7 100680683 100680683 C T MUC17 Silent p.L1996L 0.55 TCGA-Z2-A8RT-06 7 100699480 100699480 G A MUC17 Missense_Mutation p.D4457N 0.64 unknown(0) TCGA-Z2-A8RT-06 7 100806538 100806538 G A VGF Silent p.P529P 0.32 TCGA-Z2-A8RT-06 7 100852225 100852225 A C PLOD3 Missense_Mutation p.V566G 0.51 deleterious(0) probably_damaging(0.979) TCGA-Z2-A8RT-06 7 101840104 101840104 C T CUX1 Silent p.P482P 0.26 TCGA-Z2-A8RT-06 7 102881057 102881057 G A DPY19L2P2 RNA 0.44 TCGA-Z2-A8RT-06 7 103029526 103029526 G A SLC26A5 Silent p.F481F 0.56 TCGA-Z2-A8RT-06 7 103113323 103113323 G A RELN Missense_Mutation p.S3440L 0.53 deleterious_low_confidence(0.03) benign(0.02) TCGA-Z2-A8RT-06 7 103155712 103155712 G A RELN Missense_Mutation p.P2680L 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-Z2-A8RT-06 7 103205871 103205871 C T RELN Silent p.L1688L 0.52 TCGA-Z2-A8RT-06 7 103214583 103214583 C T RELN Silent p.G1489G 0.26 TCGA-Z2-A8RT-06 7 105205720 105205720 C T RINT1 Intron 0.54 TCGA-Z2-A8RT-06 7 106545697 106545697 G A PIK3CG Silent p.G1058G 0.59 TCGA-Z2-A8RT-06 7 107115078 107115078 A G GPR22 Silent p.E191E 0.25 TCGA-Z2-A8RT-06 7 107330682 107330682 G A SLC26A4 Silent p.Q421Q 0.56 TCGA-Z2-A8RT-06 7 1097667 1097667 C T GPR146 Silent p.S172S 0.36 TCGA-Z2-A8RT-06 7 11013895 11013895 G A PHF14 5'UTR 0.40 TCGA-Z2-A8RT-06 7 110303596 110303596 T C IMMP2L 3'UTR 0.39 TCGA-Z2-A8RT-06 7 112124864 112124864 C T LSMEM1 Intron 0.56 TCGA-Z2-A8RT-06 7 113519565 113519565 C T PPP1R3A Missense_Mutation p.E528K 0.25 tolerated(0.12) benign(0.063) TCGA-Z2-A8RT-06 7 115580876 115580876 G A TFEC Missense_Mutation p.S258L 0.49 tolerated(0.11) benign(0.139) TCGA-Z2-A8RT-06 7 115596749 115596749 C T TFEC Missense_Mutation p.M122I 0.51 tolerated(1) benign(0.001) TCGA-Z2-A8RT-06 7 116770673 116770673 C T ST7 Intron 0.19 TCGA-Z2-A8RT-06 7 116863078 116863078 C T ST7 3'UTR 0.45 TCGA-Z2-A8RT-06 7 117021082 117021082 C T ASZ1 Missense_Mutation p.E310K 0.22 tolerated(1) benign(0.008) TCGA-Z2-A8RT-06 7 117062384 117062384 C T ASZ1 Missense_Mutation p.G79R 0.33 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 7 117232044 117232044 A G CFTR Missense_Mutation p.E608G 0.33 tolerated(0.13) benign(0.006) TCGA-Z2-A8RT-06 7 117232614 117232614 C T CFTR Missense_Mutation p.P798L 0.30 deleterious(0) probably_damaging(0.931) TCGA-Z2-A8RT-06 7 117876967 117876967 C T ANKRD7 Silent p.S233S 0.25 TCGA-Z2-A8RT-06 7 121960181 121960181 G A CADPS2 3'UTR 0.60 TCGA-Z2-A8RT-06 7 122047609 122047609 A G CADPS2 Missense_Mutation p.F911L 0.36 deleterious(0.04) benign(0.003) TCGA-Z2-A8RT-06 7 122131366 122131366 C T CADPS2 Missense_Mutation p.G551S 0.25 tolerated(0.07) possibly_damaging(0.743) TCGA-Z2-A8RT-06 7 122339079 122339079 C T RNF133 5'UTR 0.23 TCGA-Z2-A8RT-06 7 122342063 122342063 C T RNF148 Missense_Mutation p.D248N 0.28 deleterious(0) benign(0.265) TCGA-Z2-A8RT-06 7 122635434 122635434 C T TAS2R16 Nonsense_Mutation p.W85* 0.51 TCGA-Z2-A8RT-06 7 123269076 123269076 C T ASB15 Missense_Mutation p.S343F 0.49 deleterious(0.02) probably_damaging(0.93) TCGA-Z2-A8RT-06 7 123509171 123509171 G A HYAL4 Missense_Mutation p.V282M 0.26 deleterious(0.04) possibly_damaging(0.447) TCGA-Z2-A8RT-06 7 123599749 123599749 G A SPAM1 Missense_Mutation p.G419E 0.60 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 126079100 126079100 G A GRM8 3'UTR 0.56 TCGA-Z2-A8RT-06 7 126542709 126542709 C T GRM8 Missense_Mutation p.R348Q 0.20 tolerated(0.19) possibly_damaging(0.86) TCGA-Z2-A8RT-06 7 126883051 126883051 C T GRM8 Missense_Mutation p.E70K 0.52 deleterious(0.01) probably_damaging(0.971) TCGA-Z2-A8RT-06 7 12727929 12727929 C T ARL4A Missense_Mutation p.S17L 0.41 tolerated(0.24) benign(0.138) TCGA-Z2-A8RT-06 7 128366906 128366906 G A FAM71F1 Silent p.E278E 0.15 TCGA-Z2-A8RT-06 7 128455959 128455959 C T CCDC136 Missense_Mutation p.P1113S 0.59 deleterious(0.05) probably_damaging(0.928) TCGA-Z2-A8RT-06 7 128486176 128486176 G A FLNC Missense_Mutation p.G1308E 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-Z2-A8RT-06 7 130008441 130008441 G A CPA5 3'UTR 0.31 TCGA-Z2-A8RT-06 7 131878846 131878846 C T PLXNA4 Missense_Mutation p.R944Q 0.24 tolerated(0.73) benign(0.05) TCGA-Z2-A8RT-06 7 132192741 132192741 G A PLXNA4 Missense_Mutation p.P238S 0.29 tolerated(0.24) benign(0.329) TCGA-Z2-A8RT-06 7 134882749 134882749 G A WDR91 Missense_Mutation p.S349F 0.20 tolerated(0.31) benign(0.001) TCGA-Z2-A8RT-06 7 135078773 135078773 G A CNOT4 Silent p.I508I 0.64 TCGA-Z2-A8RT-06 7 137791944 137791944 G A AKR1D1 Intron 0.25 TCGA-Z2-A8RT-06 7 137801389 137801389 C T AKR1D1 Missense_Mutation p.P321L 0.18 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 139298008 139298008 G A HIPK2 Silent p.P684P 0.41 TCGA-Z2-A8RT-06 7 140302014 140302014 G A DENND2A Missense_Mutation p.P62S 0.20 tolerated(0.1) benign(0.004) TCGA-Z2-A8RT-06 7 140453118 140453118 C A BRAF Missense_Mutation p.G606V 0.49 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-Z2-A8RT-06 7 140453137 140453137 C T BRAF Missense_Mutation p.V600M 0.47 deleterious(0) possibly_damaging(0.838) TCGA-Z2-A8RT-06 7 141540890 141540890 C T PRSS37 5'UTR 0.61 TCGA-Z2-A8RT-06 7 141619579 141619579 C T OR9A4 Missense_Mutation p.R302W 0.51 deleterious(0.04) benign(0.021) TCGA-Z2-A8RT-06 7 141673364 141673364 C T TAS2R38 Nonsense_Mutation p.W42* 0.60 TCGA-Z2-A8RT-06 7 141754593 141754593 C T MGAM Missense_Mutation p.P1067S 0.57 deleterious(0.04) benign(0.019) TCGA-Z2-A8RT-06 7 141755449 141755449 G A MGAM Missense_Mutation p.E1136K 0.34 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 141755499 141755499 G A MGAM Silent p.G1152G 0.35 TCGA-Z2-A8RT-06 7 141794601 141794601 C T MGAM Missense_Mutation p.R1570C 0.54 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 141952298 141952298 G A PRSS58 Silent p.P190P 0.57 TCGA-Z2-A8RT-06 7 141954876 141954876 G A PRSS58 Silent p.I145I 0.25 TCGA-Z2-A8RT-06 7 141954909 141954909 A G PRSS58 Silent p.S134S 0.57 TCGA-Z2-A8RT-06 7 141955438 141955438 G A PRSS58 Silent p.V32V 0.64 TCGA-Z2-A8RT-06 7 142099508 142099508 G A TRBV7-8 Silent p.I98I 0.07 TCGA-Z2-A8RT-06 7 142120306 142120306 G A TRBV7-7 Silent p.L6L 0.27 TCGA-Z2-A8RT-06 7 142423230 142423230 C T TRBV27 Silent p.L5L 0.52 TCGA-Z2-A8RT-06 7 142448667 142448667 C T TRBV29-1 Silent p.N87N 0.32 TCGA-Z2-A8RT-06 7 142458415 142458415 C T PRSS1 Missense_Mutation p.P17L 0.32 deleterious(0.02) possibly_damaging(0.461) TCGA-Z2-A8RT-06 7 142563363 142563363 C T EPHB6 Silent p.D360D 0.59 TCGA-Z2-A8RT-06 7 142626553 142626553 G A TRPV5 Missense_Mutation p.R153C 0.62 tolerated(0.08) benign(0.052) TCGA-Z2-A8RT-06 7 142636663 142636663 G A C7orf34 Missense_Mutation p.G7E 0.27 deleterious_low_confidence(0) benign(0.009) TCGA-Z2-A8RT-06 7 142637636 142637636 T A C7orf34 Missense_Mutation p.F136I 0.30 tolerated_low_confidence(0.32) possibly_damaging(0.765) TCGA-Z2-A8RT-06 7 142658153 142658153 G A KEL Missense_Mutation p.H88Y 0.56 tolerated(0.18) benign(0.002) TCGA-Z2-A8RT-06 7 142659313 142659313 C T KEL 5'UTR 0.57 TCGA-Z2-A8RT-06 7 142723599 142723599 C T OR9A2 Silent p.L207L 0.56 TCGA-Z2-A8RT-06 7 142749485 142749485 C T OR6V1 Silent p.S16S 0.51 TCGA-Z2-A8RT-06 7 142919556 142919556 C T TAS2R40 Missense_Mutation p.P129S 0.55 tolerated(0.19) benign(0.206) TCGA-Z2-A8RT-06 7 143018827 143018827 G A CLCN1 Missense_Mutation p.M194I 0.52 deleterious(0) benign(0.078) TCGA-Z2-A8RT-06 7 143021553 143021553 G C CLCN1 Missense_Mutation p.G274A 0.27 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 7 143140735 143140735 G A TAS2R60 Missense_Mutation p.A64T 0.62 tolerated(0.06) possibly_damaging(0.538) TCGA-Z2-A8RT-06 7 143175220 143175220 C T TAS2R41 Silent p.F85F 0.23 TCGA-Z2-A8RT-06 7 143270145 143270145 A C CTAGE15 Missense_Mutation p.E412A 0.17 deleterious(0.01) benign(0.008) TCGA-Z2-A8RT-06 7 143421595 143421595 C T FAM115C Silent p.F770F 0.59 TCGA-Z2-A8RT-06 7 143657201 143657201 C T OR2F1 Silent p.V46V 0.27 TCGA-Z2-A8RT-06 7 143747984 143747984 C T OR2A5 Silent p.L164L 0.30 TCGA-Z2-A8RT-06 7 143792220 143792220 G A OR2A12 Nonsense_Mutation p.W7* 0.68 TCGA-Z2-A8RT-06 7 143807011 143807011 G A OR2A2 Silent p.L112L 0.20 TCGA-Z2-A8RT-06 7 143955930 143955930 C T OR2A7 Silent p.G264G 0.12 TCGA-Z2-A8RT-06 7 144228166 144228166 G A TPK1 Intron 0.12 TCGA-Z2-A8RT-06 7 146829348 146829348 C T CNTNAP2 Silent p.S365S 0.49 TCGA-Z2-A8RT-06 7 148978818 148978818 C T ZNF783 Missense_Mutation p.S342F 0.23 tolerated(0.11) benign(0.128) TCGA-Z2-A8RT-06 7 149317103 149317103 G A ZNF767 RNA 0.62 TCGA-Z2-A8RT-06 7 149477954 149477954 C T SSPO RNA 0.32 TCGA-Z2-A8RT-06 7 149488953 149488953 C T SSPO RNA 0.54 TCGA-Z2-A8RT-06 7 150033821 150033821 C T LRRC61 5'UTR 0.24 TCGA-Z2-A8RT-06 7 150094551 150094551 C T ZNF775 Silent p.L328L 0.63 TCGA-Z2-A8RT-06 7 150217106 150217106 G A GIMAP7 Missense_Mutation p.G15E 0.51 deleterious(0.02) probably_damaging(0.998) TCGA-Z2-A8RT-06 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.30 tolerated(0.26) benign(0.085) TCGA-Z2-A8RT-06 7 150417510 150417510 G A GIMAP1 Missense_Mutation p.G140R 0.18 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 150417511 150417511 G A GIMAP1 Missense_Mutation p.G140E 0.19 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 7 150439379 150439379 C T GIMAP5 Missense_Mutation p.P51L 0.50 deleterious(0.01) possibly_damaging(0.772) TCGA-Z2-A8RT-06 7 150439750 150439750 G A GIMAP5 Missense_Mutation p.D175N 0.19 tolerated(0.32) benign(0.281) TCGA-Z2-A8RT-06 7 150500746 150500746 C T TMEM176A Silent p.S127S 0.32 TCGA-Z2-A8RT-06 7 150558356 150558356 G A AOC1 3'UTR 0.26 TCGA-Z2-A8RT-06 7 150748970 150748970 G A ASIC3 Missense_Mutation p.E430K 0.28 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 7 1516290 1516290 G A INTS1 Silent p.F1689F 0.34 TCGA-Z2-A8RT-06 7 1517196 1517196 G A INTS1 Missense_Mutation p.S1643F 0.27 deleterious(0) benign(0.008) TCGA-Z2-A8RT-06 7 151945021 151945021 C T KMT2C Missense_Mutation p.R833K 0.08 probably_damaging(0.992) TCGA-Z2-A8RT-06 7 152139600 152139600 T A AC005631.1 3'Flank 0.50 TCGA-Z2-A8RT-06 7 152551616 152551616 C T ACTR3B Missense_Mutation p.P412L 0.48 tolerated(0.06) benign(0.376) TCGA-Z2-A8RT-06 7 154379930 154379930 G A DPP6 Intron 0.56 TCGA-Z2-A8RT-06 7 154587563 154587563 G A DPP6 Silent p.E423E 0.53 TCGA-Z2-A8RT-06 7 154596636 154596636 G A DPP6 Silent p.L503L 0.22 TCGA-Z2-A8RT-06 7 154681175 154681175 C T DPP6 Missense_Mutation p.H796Y 0.22 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 7 155090062 155090062 C T INSIG1 Missense_Mutation p.P23S 0.18 tolerated_low_confidence(0.77) benign(0.002) TCGA-Z2-A8RT-06 7 156754902 156754902 C T NOM1 Missense_Mutation p.P564S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-Z2-A8RT-06 7 157015962 157015962 C T UBE3C Missense_Mutation p.P673S 0.24 tolerated(0.08) benign(0.056) TCGA-Z2-A8RT-06 7 157178365 157178367 TGT GG DNAJB6 Intron 0.20 TCGA-Z2-A8RT-06 7 157997961 157997961 G A PTPRN2 Silent p.F94F 0.44 TCGA-Z2-A8RT-06 7 16640482 16640482 T C ANKMY2 Silent p.E410E 0.45 TCGA-Z2-A8RT-06 7 16832459 16832459 C T AGR2 3'UTR 0.38 TCGA-Z2-A8RT-06 7 195584 195584 C T FAM20C Silent p.F212F 0.44 TCGA-Z2-A8RT-06 7 19765135 19765135 A T TMEM196 Splice_Site p.X153_splice 0.31 TCGA-Z2-A8RT-06 7 19765136 19765136 C T TMEM196 Splice_Site p.X153_splice 0.31 TCGA-Z2-A8RT-06 7 20725371 20725371 G A ABCB5 Missense_Mutation p.R641K 0.34 tolerated(1) benign(0.005) TCGA-Z2-A8RT-06 7 21765467 21765467 G A DNAH11 Silent p.Q2442Q 0.26 TCGA-Z2-A8RT-06 7 21775285 21775285 G A DNAH11 Missense_Mutation p.A2497T 0.25 benign(0) TCGA-Z2-A8RT-06 7 21939035 21939035 C T DNAH11 Silent p.S4384S 0.34 TCGA-Z2-A8RT-06 7 22202079 22202079 G A RAPGEF5 Missense_Mutation p.S302F 0.44 tolerated(0.7) probably_damaging(0.999) TCGA-Z2-A8RT-06 7 2281862 2281862 G A NUDT1 5'UTR 0.33 TCGA-Z2-A8RT-06 7 23872102 23872102 G A STK31 3'UTR 0.38 TCGA-Z2-A8RT-06 7 24708215 24708215 C T MPP6 Silent p.G350G 0.33 TCGA-Z2-A8RT-06 7 27142155 27142155 C T HOXA2 5'UTR 0.40 TCGA-Z2-A8RT-06 7 27194798 27194798 C T HOXA7 Silent p.Q141Q 0.35 TCGA-Z2-A8RT-06 7 2739980 2739980 C T AMZ1 5'UTR 0.33 TCGA-Z2-A8RT-06 7 29606007 29606007 G A PRR15 Missense_Mutation p.R21K 0.35 tolerated(0.28) benign(0.016) TCGA-Z2-A8RT-06 7 30793525 30793525 G A INMT Silent p.V111V 0.42 TCGA-Z2-A8RT-06 7 31142881 31142881 C T ADCYAP1R1 Silent p.I387I 0.37 TCGA-Z2-A8RT-06 7 31904563 31904563 C T PDE1C Missense_Mutation p.G308E 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 33296903 33296903 G A BBS9 Silent p.Q166Q 0.32 TCGA-Z2-A8RT-06 7 33376123 33376123 C T BBS9 Missense_Mutation p.P363S 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 34097755 34097755 C T BMPER Missense_Mutation p.P338S 0.36 tolerated(0.19) benign(0.026) TCGA-Z2-A8RT-06 7 34192733 34192733 G A BMPER Missense_Mutation p.D636N 0.37 deleterious(0.05) possibly_damaging(0.824) TCGA-Z2-A8RT-06 7 37355537 37355537 C T ELMO1 Missense_Mutation p.E36K 0.35 tolerated(0.06) possibly_damaging(0.849) TCGA-Z2-A8RT-06 7 37936528 37936528 G A NME8 Missense_Mutation p.R534Q 0.41 tolerated(0.29) benign(0.067) TCGA-Z2-A8RT-06 7 37947169 37947169 C T SFRP4 Missense_Mutation p.G318E 0.36 tolerated_low_confidence(0.13) benign(0.115) TCGA-Z2-A8RT-06 7 38247295 38247295 T C STARD3NL Silent p.L64L 0.49 TCGA-Z2-A8RT-06 7 4056848 4056848 C T SDK1 Silent p.I822I 0.42 TCGA-Z2-A8RT-06 7 40723672 40723672 C T SUGCT Silent p.F376F 0.41 TCGA-Z2-A8RT-06 7 43484972 43484972 C T HECW1 Missense_Mutation p.S734F 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 7 43906502 43906502 G A MRPS24 Silent p.F100F 0.44 TCGA-Z2-A8RT-06 7 44573050 44573050 G A NPC1L1 Silent p.L797L 0.33 TCGA-Z2-A8RT-06 7 44579693 44579693 C T NPC1L1 Silent p.A101A 0.45 TCGA-Z2-A8RT-06 7 44611192 44611192 G A DDX56 Silent p.L263L 0.37 TCGA-Z2-A8RT-06 7 44802542 44802542 C T ZMIZ2 Silent p.L553L 0.43 TCGA-Z2-A8RT-06 7 47694908 47694908 G A C7orf65 Missense_Mutation p.G11E 0.33 tolerated_low_confidence(0.24) probably_damaging(0.969) TCGA-Z2-A8RT-06 7 47945462 47945462 C T PKD1L1 Missense_Mutation p.M500I 0.40 tolerated(0.15) benign(0.001) TCGA-Z2-A8RT-06 7 4823073 4823073 C T AP5Z1 Missense_Mutation p.P165S 0.35 deleterious(0.04) possibly_damaging(0.828) TCGA-Z2-A8RT-06 7 48312496 48312496 C T ABCA13 Missense_Mutation p.S1078F 0.36 probably_damaging(0.976) TCGA-Z2-A8RT-06 7 48312532 48312532 C T ABCA13 Missense_Mutation p.S1090L 0.35 probably_damaging(0.999) TCGA-Z2-A8RT-06 7 48559844 48559844 C T ABCA13 Missense_Mutation p.L4669F 0.44 possibly_damaging(0.889) TCGA-Z2-A8RT-06 7 4856051 4856051 G A RADIL Nonsense_Mutation p.Q592* 0.40 TCGA-Z2-A8RT-06 7 4900690 4900690 G A PAPOLB Missense_Mutation p.A250V 0.33 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 7 50459562 50459562 G C IKZF1 Splice_Site p.X242_splice 0.33 TCGA-Z2-A8RT-06 7 50467841 50467841 C T IKZF1 Missense_Mutation p.P317L 0.40 deleterious(0.03) benign(0.002) TCGA-Z2-A8RT-06 7 50467968 50467968 G A IKZF1 Silent p.E359E 0.29 TCGA-Z2-A8RT-06 7 51096309 51096309 G A COBL Silent p.P828P 0.45 TCGA-Z2-A8RT-06 7 51096310 51096310 G A COBL Missense_Mutation p.P828L 0.44 tolerated(0.82) benign(0.002) TCGA-Z2-A8RT-06 7 53103662 53103662 C G POM121L12 Missense_Mutation p.P100A 0.36 tolerated(1) possibly_damaging(0.908) TCGA-Z2-A8RT-06 7 53103858 53103858 C T POM121L12 Missense_Mutation p.A165V 0.36 tolerated(0.21) possibly_damaging(0.866) TCGA-Z2-A8RT-06 7 53103859 53103859 C T POM121L12 Silent p.A165A 0.36 TCGA-Z2-A8RT-06 7 55224332 55224332 C T EGFR Silent p.I371I 0.37 TCGA-Z2-A8RT-06 7 5545195 5545195 G A FBXL18 Silent p.L29L 0.34 TCGA-Z2-A8RT-06 7 55752943 55752943 G A RNU6-389P 5'Flank 0.32 TCGA-Z2-A8RT-06 7 55874926 55874926 G A SEPT14 Silent p.F281F 0.29 TCGA-Z2-A8RT-06 7 56130745 56130745 C T CCT6A Silent p.I521I 0.37 TCGA-Z2-A8RT-06 7 57188843 57188843 G A ZNF479 Silent p.F93F 0.31 TCGA-Z2-A8RT-06 7 6204522 6204522 G A CYTH3 3'UTR 0.38 TCGA-Z2-A8RT-06 7 6204523 6204523 G A CYTH3 3'UTR 0.38 TCGA-Z2-A8RT-06 7 63538145 63538145 T C ZNF727 Missense_Mutation p.S240P 0.59 tolerated(0.13) benign(0.109) TCGA-Z2-A8RT-06 7 63982373 63982373 A C ZNF680 Silent p.L253L 0.37 TCGA-Z2-A8RT-06 7 64291840 64291840 C T ZNF138 Missense_Mutation p.R48C 0.32 deleterious(0.01) benign(0.045) TCGA-Z2-A8RT-06 7 66458376 66458376 G A SBDS Missense_Mutation p.S96L 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-Z2-A8RT-06 7 6730694 6730694 G A ZNF12 Missense_Mutation p.H627Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 7 70255396 70255396 C T AUTS2 Missense_Mutation p.S1065F 0.32 deleterious(0.05) probably_damaging(0.916) TCGA-Z2-A8RT-06 7 71036279 71036279 C T WBSCR17 Silent p.A324A 0.42 TCGA-Z2-A8RT-06 7 72849009 72849009 C T FZD9 Silent p.S224S 0.31 TCGA-Z2-A8RT-06 7 73770839 73770839 C T CLIP2 Silent p.T301T 0.31 TCGA-Z2-A8RT-06 7 74015437 74015437 C T GTF2IRD1 Missense_Mutation p.S931F 0.51 deleterious(0) benign(0.44) TCGA-Z2-A8RT-06 7 75517381 75517381 C T RHBDD2 Missense_Mutation p.S270F 0.34 tolerated(0.84) benign(0.032) TCGA-Z2-A8RT-06 7 76027101 76027101 C T SRCRB4D Missense_Mutation p.R201Q 0.23 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 76062784 76062784 C T ZP3 Intron 0.39 TCGA-Z2-A8RT-06 7 76619596 76619596 C T UPK3B Intron 0.17 TCGA-Z2-A8RT-06 7 77998513 77998513 C T MAGI2 Missense_Mutation p.E355K 0.33 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 7 82532018 82532018 G A PCLO Missense_Mutation p.P4493S 0.29 unknown(0) TCGA-Z2-A8RT-06 7 82544532 82544532 C T PCLO Missense_Mutation p.G4257E 0.38 unknown(0) TCGA-Z2-A8RT-06 7 82544912 82544912 C T PCLO Silent p.Q4130Q 0.36 TCGA-Z2-A8RT-06 7 82544950 82544950 G A PCLO Missense_Mutation p.P4118S 0.27 unknown(0) TCGA-Z2-A8RT-06 7 82545811 82545811 G A PCLO Missense_Mutation p.R3831C 0.36 unknown(0) TCGA-Z2-A8RT-06 7 82582114 82582114 C T PCLO Missense_Mutation p.G2719R 0.30 unknown(0) TCGA-Z2-A8RT-06 7 82583162 82583162 C T PCLO Silent p.Q2369Q 0.47 TCGA-Z2-A8RT-06 7 82584643 82584643 T A PCLO Nonsense_Mutation p.K1876* 0.27 TCGA-Z2-A8RT-06 7 82585315 82585315 C T PCLO Missense_Mutation p.E1652K 0.44 unknown(0) TCGA-Z2-A8RT-06 7 82585615 82585615 C T PCLO Missense_Mutation p.E1552K 0.38 unknown(0) TCGA-Z2-A8RT-06 7 82585616 82585616 T A PCLO Missense_Mutation p.E1551D 0.36 unknown(0) TCGA-Z2-A8RT-06 7 82595459 82595459 A T PCLO Silent p.P1215P 0.38 TCGA-Z2-A8RT-06 7 83037717 83037717 G A SEMA3E Missense_Mutation p.R213C 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 7 86542339 86542339 G A KIAA1324L Missense_Mutation p.P638L 0.42 deleterious(0.01) benign(0.134) TCGA-Z2-A8RT-06 7 87214933 87214933 G A ABCB1 Missense_Mutation p.H61Y 0.42 deleterious(0) possibly_damaging(0.883) TCGA-Z2-A8RT-06 7 87837833 87837833 G A SRI Missense_Mutation p.P187S 0.32 tolerated(0.44) benign(0) TCGA-Z2-A8RT-06 7 87837834 87837834 G A SRI Silent p.F186F 0.31 TCGA-Z2-A8RT-06 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.30 tolerated(0.07) benign(0.032) TCGA-Z2-A8RT-06 7 88966129 88966129 C T ZNF804B Missense_Mutation p.P1278L 0.40 deleterious(0) possibly_damaging(0.743) TCGA-Z2-A8RT-06 7 89856669 89856669 C T STEAP2 Missense_Mutation p.P293S 0.25 tolerated(0.07) benign(0.01) TCGA-Z2-A8RT-06 7 90419950 90419950 T A CDK14 Missense_Mutation p.F158Y 0.43 tolerated(0.22) possibly_damaging(0.759) TCGA-Z2-A8RT-06 7 91863814 91863814 G A KRIT1 Missense_Mutation p.S313L 0.44 tolerated(0.12) benign(0.313) TCGA-Z2-A8RT-06 7 92164000 92164000 C G RBM48 Missense_Mutation p.R245G 0.57 tolerated(0.43) benign(0) TCGA-Z2-A8RT-06 7 92760771 92760771 G A SAMD9L Missense_Mutation p.S1505F 0.38 tolerated(0.12) benign(0.02) TCGA-Z2-A8RT-06 7 92761621 92761621 C T SAMD9L Missense_Mutation p.E1222K 0.42 tolerated(0.36) benign(0.209) TCGA-Z2-A8RT-06 7 92821575 92821575 G A HEPACAM2 Silent p.D459D 0.33 TCGA-Z2-A8RT-06 7 92985310 92985310 C T CCDC132 Missense_Mutation p.P898L 0.38 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 7 94038731 94038731 C T COL1A2 Missense_Mutation p.P297L 0.26 unknown(0) TCGA-Z2-A8RT-06 7 97821758 97821758 C T LMTK2 Nonsense_Mutation p.Q661* 0.53 TCGA-Z2-A8RT-06 7 99273924 99273924 G A CYP3A5 Intron 0.25 TCGA-Z2-A8RT-06 8 100133440 100133440 C T VPS13B Missense_Mutation p.P325S 0.53 tolerated(0.2) possibly_damaging(0.857) TCGA-Z2-A8RT-06 8 10467093 10467093 C T RP1L1 Silent p.S1505S 0.44 TCGA-Z2-A8RT-06 8 10467682 10467682 C T RP1L1 Missense_Mutation p.G1309E 0.35 unknown(0) TCGA-Z2-A8RT-06 8 105405055 105405055 G A DPYS Missense_Mutation p.P467L 0.55 deleterious(0.03) probably_damaging(0.999) TCGA-Z2-A8RT-06 8 105405075 105405075 C T DPYS Silent p.G460G 0.54 TCGA-Z2-A8RT-06 8 110588241 110588241 C T SYBU Missense_Mutation p.E296K 0.71 deleterious(0) probably_damaging(0.984) TCGA-Z2-A8RT-06 8 113293470 113293470 A T CSMD3 Silent p.L3147L 0.71 TCGA-Z2-A8RT-06 8 117768056 117768056 G A EIF3H 5'UTR 0.60 TCGA-Z2-A8RT-06 8 119391806 119391806 G A SAMD12 Silent p.L152L 0.72 TCGA-Z2-A8RT-06 8 120118441 120118441 C T COLEC10 3'UTR 0.63 TCGA-Z2-A8RT-06 8 124243747 124243747 G A C8orf76 Missense_Mutation p.S203F 0.63 deleterious(0.03) benign(0.072) TCGA-Z2-A8RT-06 8 124696873 124696873 G A ANXA13 Missense_Mutation p.R311C 0.63 deleterious(0) possibly_damaging(0.873) TCGA-Z2-A8RT-06 8 130789698 130789698 G A GSDMC Missense_Mutation p.R46C 0.67 tolerated(0.2) benign(0.042) TCGA-Z2-A8RT-06 8 133036823 133036823 C T OC90 Missense_Mutation p.E447K 0.57 deleterious(0.01) benign(0.062) TCGA-Z2-A8RT-06 8 133053897 133053897 G A OC90 Silent p.F73F 0.77 TCGA-Z2-A8RT-06 8 13357633 13357633 G A DLC1 5'UTR 0.48 TCGA-Z2-A8RT-06 8 133584590 133584590 G A LRRC6 Silent p.T455T 0.65 TCGA-Z2-A8RT-06 8 139151280 139151280 C T FAM135B Missense_Mutation p.D1284N 0.72 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 8 140744262 140744262 G A TRAPPC9 Missense_Mutation p.T1178I 0.71 tolerated(0.07) benign(0) TCGA-Z2-A8RT-06 8 141570514 141570514 G A AGO2 Missense_Mutation p.S205F 0.58 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 8 142487537 142487537 G A MROH5 3'UTR 0.64 TCGA-Z2-A8RT-06 8 143381844 143381844 C T TSNARE1 Intron 0.69 TCGA-Z2-A8RT-06 8 143425413 143425413 G A TSNARE1 Missense_Mutation p.A220V 0.74 tolerated_low_confidence(0.22) benign(0.006) TCGA-Z2-A8RT-06 8 143436002 143436002 G A TSNARE1 Silent p.P28P 0.57 TCGA-Z2-A8RT-06 8 143569859 143569859 G A BAI1 Missense_Mutation p.G815R 0.67 tolerated(0.06) probably_damaging(0.988) TCGA-Z2-A8RT-06 8 144942318 144942318 C T EPPK1 Missense_Mutation p.D1702N 0.62 possibly_damaging(0.61) TCGA-Z2-A8RT-06 8 144944203 144944203 C T EPPK1 Missense_Mutation p.M1073I 0.67 benign(0.018) TCGA-Z2-A8RT-06 8 145095168 145095168 G A SPATC1 Silent p.T190T 0.57 TCGA-Z2-A8RT-06 8 145665807 145665807 G A TONSL Missense_Mutation p.A406V 0.74 tolerated(0.07) benign(0.026) TCGA-Z2-A8RT-06 8 145755995 145755995 G A ARHGAP39 Silent p.F1052F 0.65 TCGA-Z2-A8RT-06 8 17132409 17132409 C T VPS37A Missense_Mutation p.S195L 0.29 tolerated(0.08) benign(0.003) TCGA-Z2-A8RT-06 8 17163353 17163353 C T MTMR7 Missense_Mutation p.R422K 0.43 tolerated(0.12) probably_damaging(0.952) TCGA-Z2-A8RT-06 8 18541466 18541466 G A PSD3 Intron 0.35 TCGA-Z2-A8RT-06 8 19297441 19297441 C T CSGALNACT1 Missense_Mutation p.E285K 0.46 tolerated(0.49) benign(0.158) TCGA-Z2-A8RT-06 8 19362986 19362986 G A CSGALNACT1 Silent p.L120L 0.43 TCGA-Z2-A8RT-06 8 2041865 2041865 G A MYOM2 Missense_Mutation p.G691E 0.30 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 8 21925157 21925157 C T DMTN Silent p.S71S 0.34 TCGA-Z2-A8RT-06 8 23049398 23049398 C T TNFRSF10A Missense_Mutation p.D406N 0.28 deleterious(0) possibly_damaging(0.853) TCGA-Z2-A8RT-06 8 23155612 23155612 C T LOXL2 Missense_Mutation p.E757K 0.41 deleterious(0.02) possibly_damaging(0.589) TCGA-Z2-A8RT-06 8 23709043 23709043 C T STC1 Missense_Mutation p.G88E 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 8 24187573 24187573 G A ADAM28 Missense_Mutation p.D350N 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-Z2-A8RT-06 8 24255211 24255211 C T ADAMDEC1 Missense_Mutation p.R215W 0.30 deleterious(0.02) possibly_damaging(0.517) TCGA-Z2-A8RT-06 8 24324357 24324357 G A ADAM7 Silent p.V145V 0.37 TCGA-Z2-A8RT-06 8 24324551 24324551 C T ADAM7 Intron 0.42 TCGA-Z2-A8RT-06 8 24333986 24333986 G A ADAM7 Missense_Mutation p.R225Q 0.44 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 8 24350738 24350738 G A ADAM7 Missense_Mutation p.G613E 0.41 tolerated(0.23) benign(0.113) TCGA-Z2-A8RT-06 8 24774666 24774666 C T NEFM Missense_Mutation p.S433F 0.34 deleterious(0) unknown(0) TCGA-Z2-A8RT-06 8 25182925 25182925 C A DOCK5 Missense_Mutation p.P589T 0.33 deleterious(0) probably_damaging(0.997) TCGA-Z2-A8RT-06 8 25182926 25182926 C T DOCK5 Missense_Mutation p.P589L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-A8RT-06 8 25708118 25708118 C T EBF2 Missense_Mutation p.G563E 0.33 deleterious_low_confidence(0) benign(0.188) TCGA-Z2-A8RT-06 8 25715873 25715873 C T EBF2 Missense_Mutation p.G497E 0.31 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-Z2-A8RT-06 8 25745360 25745360 C T EBF2 Missense_Mutation p.E294K 0.41 deleterious(0.04) probably_damaging(0.957) TCGA-Z2-A8RT-06 8 27151776 27151776 G A TRIM35 Missense_Mutation p.R195C 0.32 deleterious(0) possibly_damaging(0.708) TCGA-Z2-A8RT-06 8 27289797 27289797 C T PTK2B Silent p.F302F 0.29 TCGA-Z2-A8RT-06 8 27507301 27507301 C T SCARA3 Silent p.F30F 0.41 TCGA-Z2-A8RT-06 8 27507302 27507302 C T SCARA3 Missense_Mutation p.P31S 0.41 tolerated(0.86) benign(0.012) TCGA-Z2-A8RT-06 8 2855648 2855648 G A CSMD1 Silent p.F2754F 0.39 TCGA-Z2-A8RT-06 8 28588779 28588779 T C EXTL3 Silent p.L730L 0.41 TCGA-Z2-A8RT-06 8 2976008 2976008 G A CSMD1 Missense_Mutation p.P2115S 0.42 benign(0.169) TCGA-Z2-A8RT-06 8 29780101 29780101 G A FAM183CP RNA 0.40 TCGA-Z2-A8RT-06 8 30469915 30469915 G A GTF2E2 Silent p.A150A 0.39 TCGA-Z2-A8RT-06 8 30469916 30469916 G A GTF2E2 Missense_Mutation p.A150V 0.38 tolerated(0.09) benign(0.082) TCGA-Z2-A8RT-06 8 30703343 30703343 G A TEX15 Missense_Mutation p.S1064L 0.39 tolerated(1) benign(0) TCGA-Z2-A8RT-06 8 30706551 30706551 C T TEX15 5'UTR 0.39 TCGA-Z2-A8RT-06 8 30854000 30854000 C T PURG 3'UTR 0.30 TCGA-Z2-A8RT-06 8 3443759 3443759 G A CSMD1 Missense_Mutation p.S374L 0.30 probably_damaging(0.912) TCGA-Z2-A8RT-06 8 35616912 35616912 T A UNC5D Missense_Mutation p.N746K 0.37 deleterious(0.02) possibly_damaging(0.73) TCGA-Z2-A8RT-06 8 35624433 35624433 C T UNC5D Missense_Mutation p.S776F 0.34 tolerated(0.26) possibly_damaging(0.804) TCGA-Z2-A8RT-06 8 39103643 39103643 G A ADAM32 Silent p.K620K 0.42 TCGA-Z2-A8RT-06 8 39613269 39613269 C T ADAM2 Missense_Mutation p.G592E 0.35 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 8 39780102 39780102 G A IDO1 Missense_Mutation p.G157R 0.27 deleterious(0) probably_damaging(0.933) TCGA-Z2-A8RT-06 8 39785581 39785581 G A IDO1 Silent p.K363K 0.48 TCGA-Z2-A8RT-06 8 39806772 39806772 C T IDO2 Missense_Mutation p.P43S 0.56 deleterious(0.02) possibly_damaging(0.784) TCGA-Z2-A8RT-06 8 39872860 39872860 C T IDO2 Silent p.I334I 0.39 TCGA-Z2-A8RT-06 8 40011117 40011117 C T C8orf4 Silent p.I22I 0.41 TCGA-Z2-A8RT-06 8 40011202 40011202 C T C8orf4 Missense_Mutation p.L51F 0.38 deleterious(0) probably_damaging(0.994) TCGA-Z2-A8RT-06 8 40532232 40532232 C T ZMAT4 Missense_Mutation p.E190K 0.28 tolerated(0.19) benign(0.437) TCGA-Z2-A8RT-06 8 40554830 40554830 G A ZMAT4 Nonsense_Mutation p.Q95* 0.34 TCGA-Z2-A8RT-06 8 42587284 42587284 C T CHRNB3 Silent p.F278F 0.34 TCGA-Z2-A8RT-06 8 48855798 48855798 G A PRKDC Missense_Mutation p.L313F 0.50 benign(0.001) TCGA-Z2-A8RT-06 8 48855799 48855799 T A PRKDC Silent p.A312A 0.52 TCGA-Z2-A8RT-06 8 51664626 51664626 C T SNTG1 Silent p.I450I 0.34 TCGA-Z2-A8RT-06 8 52336214 52336214 G A PXDNL Silent p.F572F 0.53 TCGA-Z2-A8RT-06 8 52732910 52732910 G A PCMTD1 3'UTR 0.23 TCGA-Z2-A8RT-06 8 54163424 54163424 G A OPRK1 Silent p.I58I 0.26 TCGA-Z2-A8RT-06 8 55538573 55538573 G A RP1 Missense_Mutation p.E711K 0.40 deleterious(0.03) benign(0.293) TCGA-Z2-A8RT-06 8 55538578 55538578 G A RP1 Missense_Mutation p.M712I 0.34 tolerated(0.31) benign(0) TCGA-Z2-A8RT-06 8 55542844 55542844 C T RP1 Silent p.F2134F 0.33 TCGA-Z2-A8RT-06 8 57219297 57219297 G A SDR16C5 Silent p.I216I 0.35 TCGA-Z2-A8RT-06 8 57354037 57354037 C T PENK Missense_Mutation p.E200K 0.47 deleterious(0.01) possibly_damaging(0.694) TCGA-Z2-A8RT-06 8 61654089 61654089 C T CHD7 Missense_Mutation p.P33L 0.46 possibly_damaging(0.713) TCGA-Z2-A8RT-06 8 63927853 63927853 A G GGH 3'UTR 0.41 TCGA-Z2-A8RT-06 8 66621312 66621312 C T MTFR1 3'UTR 0.37 TCGA-Z2-A8RT-06 8 66963846 66963846 G A DNAJC5B Missense_Mutation p.E22K 0.46 tolerated(0.51) benign(0.108) TCGA-Z2-A8RT-06 8 67012367 67012367 C T DNAJC5B 3'UTR 0.31 TCGA-Z2-A8RT-06 8 67086827 67086827 G A TRIM55 Silent p.%3D 0.35 TCGA-Z2-A8RT-06 8 68396992 68396992 C T CPA6 Missense_Mutation p.M223I 0.29 tolerated(0.08) benign(0.042) TCGA-Z2-A8RT-06 8 69031679 69031679 C T PREX2 Missense_Mutation p.P1145L 0.36 deleterious(0) benign(0.212) TCGA-Z2-A8RT-06 8 69046410 69046410 G A PREX2 Missense_Mutation p.E1295K 0.24 deleterious(0.01) benign(0.024) TCGA-Z2-A8RT-06 8 69143605 69143605 G A PREX2 Missense_Mutation p.E1605K 0.38 deleterious_low_confidence(0.01) benign(0.079) TCGA-Z2-A8RT-06 8 69143684 69143684 A C PREX2 3'UTR 0.33 TCGA-Z2-A8RT-06 8 69445360 69445360 G A C8orf34 Missense_Mutation p.E361K 0.37 deleterious(0.02) probably_damaging(0.971) TCGA-Z2-A8RT-06 8 70533438 70533438 A C SULF1 Missense_Mutation p.S516R 0.25 tolerated(0.56) benign(0.001) TCGA-Z2-A8RT-06 8 70585324 70585324 G A SLCO5A1 Missense_Mutation p.P776L 0.37 deleterious(0) benign(0.027) TCGA-Z2-A8RT-06 8 71593286 71593286 C T XKR9 5'UTR 0.48 TCGA-Z2-A8RT-06 8 7308313 7308313 G A SPAG11B Silent p.P108P 0.18 TCGA-Z2-A8RT-06 8 73849489 73849489 C T KCNB2 Silent p.F633F 0.33 TCGA-Z2-A8RT-06 8 73921256 73921256 C T TERF1 Silent p.L45L 0.57 TCGA-Z2-A8RT-06 8 75932289 75932289 C T CRISPLD1 Missense_Mutation p.H407Y 0.40 deleterious(0.04) benign(0.004) TCGA-Z2-A8RT-06 8 76465400 76465400 C T HNF4G Missense_Mutation p.P195S 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-Z2-A8RT-06 8 77618689 77618689 A T ZFHX4 Missense_Mutation p.E789V 0.39 possibly_damaging(0.607) TCGA-Z2-A8RT-06 8 77775842 77775842 C T ZFHX4 Missense_Mutation p.P3298S 0.50 probably_damaging(0.994) TCGA-Z2-A8RT-06 8 82355657 82355657 G A PMP2 Silent p.C125C 0.25 TCGA-Z2-A8RT-06 8 82665456 82665456 G A CHMP4C Missense_Mutation p.M116I 0.34 tolerated(0.07) benign(0.188) TCGA-Z2-A8RT-06 8 85799987 85799987 C T RALYL Silent p.F291F 0.39 TCGA-Z2-A8RT-06 8 86157917 86157917 G A CA13 5'UTR 0.49 TCGA-Z2-A8RT-06 8 87081848 87081848 C T PSKH2 Missense_Mutation p.G2R 0.30 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-Z2-A8RT-06 8 88885130 88885130 G A DCAF4L2 Missense_Mutation p.P357L 0.60 deleterious(0) benign(0.111) TCGA-Z2-A8RT-06 8 88885704 88885704 C T DCAF4L2 Missense_Mutation p.G166S 0.74 tolerated(0.49) benign(0.002) TCGA-Z2-A8RT-06 8 95178089 95178089 G A CDH17 Silent p.F394F 0.71 TCGA-Z2-A8RT-06 8 95416360 95416360 G A RAD54B Nonsense_Mutation p.R297* 0.66 TCGA-Z2-A8RT-06 8 95680309 95680309 G A ESRP1 Missense_Mutation p.G355E 0.65 deleterious(0.02) possibly_damaging(0.864) TCGA-Z2-A8RT-06 9 100137839 100137839 G A CCDC180 Missense_Mutation p.A1648T 0.77 deleterious(0) possibly_damaging(0.682) TCGA-Z2-A8RT-06 9 100692629 100692629 C T HEMGN Missense_Mutation p.E350K 0.82 tolerated(0.16) probably_damaging(0.953) TCGA-Z2-A8RT-06 9 100971143 100971143 G A TBC1D2 Nonsense_Mutation p.Q653* 0.42 TCGA-Z2-A8RT-06 9 104433368 104433368 G A GRIN3A Silent p.F442F 0.80 TCGA-Z2-A8RT-06 9 105767496 105767496 G A CYLC2 Missense_Mutation p.D195N 0.72 tolerated(0.65) unknown(0) TCGA-Z2-A8RT-06 9 107360927 107360927 G A OR13C5 Silent p.F256F 0.82 TCGA-Z2-A8RT-06 9 112900411 112900411 C T PALM2-AKAP2 Missense_Mutation p.P863S 0.87 tolerated(0.07) probably_damaging(0.999) TCGA-Z2-A8RT-06 9 113208183 113208183 C T SVEP1 Missense_Mutation p.G1466E 0.75 probably_damaging(0.985) TCGA-Z2-A8RT-06 9 117848506 117848506 G A TNC Missense_Mutation p.P502S 0.42 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 9 117853226 117853226 G A TNC Silent p.V24V 0.85 TCGA-Z2-A8RT-06 9 117885 117885 G A FOXD4 Missense_Mutation p.P79S 0.61 tolerated(1) benign(0.01) TCGA-Z2-A8RT-06 9 118974151 118974151 G A PAPPA Missense_Mutation p.D620N 0.43 deleterious(0) possibly_damaging(0.822) TCGA-Z2-A8RT-06 9 120475852 120475852 T A TLR4 Silent p.S482S 0.81 TCGA-Z2-A8RT-06 9 120476895 120476895 G A TLR4 Missense_Mutation p.G830E 0.77 tolerated_low_confidence(1) benign(0.002) TCGA-Z2-A8RT-06 9 122075601 122075601 G A BRINP1 Silent p.F11F 0.82 TCGA-Z2-A8RT-06 9 125274021 125274021 G A OR1J2 Silent p.%3D 0.86 TCGA-Z2-A8RT-06 9 125329871 125329871 C T OR1L8 Missense_Mutation p.D296N 0.76 deleterious(0.01) possibly_damaging(0.834) TCGA-Z2-A8RT-06 9 125391711 125391711 G A OR1B1 Missense_Mutation p.A35V 0.74 tolerated(0.51) benign(0.002) TCGA-Z2-A8RT-06 9 125613662 125613662 G A RC3H2 Silent p.I1057I 0.78 TCGA-Z2-A8RT-06 9 126136877 126136877 G T CRB2 Nonsense_Mutation p.E1137* 0.80 TCGA-Z2-A8RT-06 9 127915979 127915979 G A PPP6C Missense_Mutation p.P205S 0.75 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 9 130570530 130570530 C T FPGS Silent p.F254F 0.81 TCGA-Z2-A8RT-06 9 130630162 130630162 G A AK1 3'UTR 0.78 TCGA-Z2-A8RT-06 9 131587087 131587087 G A C9orf114 Silent p.L258L 0.90 TCGA-Z2-A8RT-06 9 131847564 131847564 C T DOLPP1 Missense_Mutation p.S114F 0.43 tolerated(0.13) benign(0.02) TCGA-Z2-A8RT-06 9 133342166 133342166 G A ASS1 Missense_Mutation p.D159N 0.71 deleterious(0.03) benign(0.046) TCGA-Z2-A8RT-06 9 133738217 133738217 C T ABL1 Missense_Mutation p.A225V 0.37 deleterious(0) probably_damaging(0.99) TCGA-Z2-A8RT-06 9 134136571 134136571 G A FAM78A Missense_Mutation p.P164S 0.75 deleterious(0.05) probably_damaging(0.998) TCGA-Z2-A8RT-06 9 135538002 135538002 G A DDX31 Silent p.L157L 0.42 TCGA-Z2-A8RT-06 9 135944537 135944537 C T CEL Nonsense_Mutation p.Q396* 0.71 TCGA-Z2-A8RT-06 9 136343467 136343467 G A SLC2A6 Missense_Mutation p.A55V 0.81 tolerated(0.42) probably_damaging(0.936) TCGA-Z2-A8RT-06 9 136501705 136501705 C T DBH Missense_Mutation p.A71V 0.81 tolerated(0.57) benign(0.004) TCGA-Z2-A8RT-06 9 136521656 136521656 G A DBH Silent p.G482G 0.75 TCGA-Z2-A8RT-06 9 137677878 137677878 G A COL5A1 Missense_Mutation p.G877E 0.68 unknown(0) TCGA-Z2-A8RT-06 9 139370370 139370370 G A SEC16A Silent p.I566I 0.38 TCGA-Z2-A8RT-06 9 139650976 139650976 G A LCN8 Missense_Mutation p.P75L 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-Z2-A8RT-06 9 140139664 140139664 G A FAM166A Missense_Mutation p.H177Y 0.86 tolerated(0.17) possibly_damaging(0.876) TCGA-Z2-A8RT-06 9 140510274 140510274 G A C9orf37 Silent p.S126S 0.84 TCGA-Z2-A8RT-06 9 16437034 16437034 G A BNC2 Silent p.A386A 0.67 TCGA-Z2-A8RT-06 9 17786504 17786504 G A SH3GL2 Missense_Mutation p.G105R 0.64 deleterious(0.03) possibly_damaging(0.778) TCGA-Z2-A8RT-06 9 21141108 21141108 C T IFNW1 Silent p.L154L 0.60 TCGA-Z2-A8RT-06 9 21201932 21201932 G A IFNA7 Missense_Mutation p.S78F 0.70 tolerated(0.08) benign(0.021) TCGA-Z2-A8RT-06 9 21409309 21409309 G A IFNA8 Missense_Mutation p.R45Q 0.70 deleterious(0.02) benign(0.302) TCGA-Z2-A8RT-06 9 21440773 21440773 C T IFNA1 Silent p.N89N 0.45 TCGA-Z2-A8RT-06 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.62 TCGA-Z2-A8RT-06 9 32631803 32631803 T C TAF1L Missense_Mutation p.K1259E 0.61 deleterious(0.04) possibly_damaging(0.9) TCGA-Z2-A8RT-06 9 33385519 33385519 C T AQP7 Intron 0.75 TCGA-Z2-A8RT-06 9 33941698 33941698 G A UBAP2 Silent p.I626I 0.68 TCGA-Z2-A8RT-06 9 34709848 34709848 C T CCL21 Silent p.R38R 0.59 TCGA-Z2-A8RT-06 9 37495893 37495893 C T POLR1E Missense_Mutation p.S221F 0.61 deleterious(0.01) probably_damaging(0.979) TCGA-Z2-A8RT-06 9 37537149 37537149 G A FBXO10 Silent p.F459F 0.60 TCGA-Z2-A8RT-06 9 37744609 37744609 G A FRMPD1 Silent p.L860L 0.67 TCGA-Z2-A8RT-06 9 38396017 38396017 C T ALDH1B1 Missense_Mutation p.S91F 0.66 deleterious(0) benign(0.256) TCGA-Z2-A8RT-06 9 396862 396862 C T DOCK8 Silent p.F1016F 0.63 TCGA-Z2-A8RT-06 9 4849544 4849544 C T RCL1 Missense_Mutation p.P322L 0.40 deleterious(0.02) possibly_damaging(0.459) TCGA-Z2-A8RT-06 9 5054784 5054784 C T JAK2 Missense_Mutation p.P279L 0.68 tolerated(0.31) benign(0.07) TCGA-Z2-A8RT-06 9 5549345 5549345 G A PDCD1LG2 Silent p.R124R 0.59 TCGA-Z2-A8RT-06 9 5549346 5549346 A T PDCD1LG2 Nonsense_Mutation p.K125* 0.60 TCGA-Z2-A8RT-06 9 6329103 6329103 G A TPD52L3 3'UTR 0.91 TCGA-Z2-A8RT-06 9 6605261 6605261 G A GLDC Missense_Mutation p.T244I 0.60 tolerated(0.57) benign(0.002) TCGA-Z2-A8RT-06 9 67968533 67968533 G A ANKRD20A1 Missense_Mutation p.D698N 0.11 deleterious(0.03) benign(0) TCGA-Z2-A8RT-06 9 69423739 69423739 C T ANKRD20A4 Missense_Mutation p.R679C 0.46 deleterious(0.05) benign(0.001) TCGA-Z2-A8RT-06 9 71007269 71007269 T C PGM5 Missense_Mutation p.F308S 0.62 deleterious(0) probably_damaging(0.977) TCGA-Z2-A8RT-06 9 71098936 71098936 C T PGM5 Missense_Mutation p.P484L 0.70 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 9 73230966 73230966 G A TRPM3 Missense_Mutation p.P783L 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-Z2-A8RT-06 9 74526669 74526669 A G C9orf85 Missense_Mutation p.N7D 0.63 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 9 74865614 74865614 C T GDA Intron 0.79 TCGA-Z2-A8RT-06 9 78641928 78641928 C T PCSK5 Missense_Mutation p.R203C 0.69 deleterious(0) probably_damaging(0.988) TCGA-Z2-A8RT-06 9 79441589 79441589 C T PRUNE2 Missense_Mutation p.E190K 0.72 tolerated(0.5) benign(0.252) TCGA-Z2-A8RT-06 9 79936481 79936481 C T VPS13A Silent p.S1883S 0.74 TCGA-Z2-A8RT-06 9 8389406 8389406 C T PTPRD Silent p.G1404G 0.65 TCGA-Z2-A8RT-06 9 84530477 84530477 C T SPATA31D5P RNA 0.58 TCGA-Z2-A8RT-06 9 85950490 85950490 G A FRMD3 Silent p.F179F 0.75 TCGA-Z2-A8RT-06 9 8636739 8636739 C T PTPRD Nonsense_Mutation p.W57* 0.70 TCGA-Z2-A8RT-06 9 86503463 86503463 G A KIF27 Missense_Mutation p.S675F 0.59 tolerated(0.19) benign(0.039) TCGA-Z2-A8RT-06 9 86554607 86554607 G A C9orf64 Missense_Mutation p.S282L 0.73 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 9 91617288 91617288 T C S1PR3 3'UTR 0.65 TCGA-Z2-A8RT-06 9 99522052 99522052 G A ZNF510 Missense_Mutation p.P354S 0.75 tolerated(0.56) benign(0.004) TCGA-Z2-A8RT-06 X 100078319 100078319 G A CSTF2 Missense_Mutation p.G116R 0.40 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 100083059 100083059 G A CSTF2 Missense_Mutation p.G286E 0.44 tolerated(0.2) benign(0.226) TCGA-Z2-A8RT-06 X 100505526 100505526 G A DRP2 Missense_Mutation p.G552E 0.36 deleterious(0) probably_damaging(0.982) TCGA-Z2-A8RT-06 X 100513360 100513360 G A DRP2 Missense_Mutation p.S818N 0.35 tolerated(0.22) benign(0.008) TCGA-Z2-A8RT-06 X 100809338 100809338 C T ARMCX1 3'UTR 0.39 TCGA-Z2-A8RT-06 X 101572185 101572185 C T NXF2 Intron 0.28 TCGA-Z2-A8RT-06 X 101911938 101911938 G A GPRASP1 Missense_Mutation p.E1033K 0.38 tolerated(0.07) benign(0.134) TCGA-Z2-A8RT-06 X 102529337 102529337 C A TCEAL5 Missense_Mutation p.G52V 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-A8RT-06 X 102885069 102885069 G T TCEAL1 Missense_Mutation p.R75S 0.43 tolerated_low_confidence(0.24) benign(0) TCGA-Z2-A8RT-06 X 103268203 103268203 G A H2BFWT Silent p.P10P 0.42 TCGA-Z2-A8RT-06 X 105011195 105011195 C T IL1RAPL2 Silent p.I534I 0.41 TCGA-Z2-A8RT-06 X 105167109 105167109 G A NRK Splice_Site p.X872_splice 0.34 TCGA-Z2-A8RT-06 X 105280808 105280808 G A SERPINA7 Missense_Mutation p.S81F 0.37 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 105450384 105450384 C T MUM1L1 Missense_Mutation p.S320L 0.30 deleterious(0.03) possibly_damaging(0.755) TCGA-Z2-A8RT-06 X 105970568 105970568 G A RNF128 Missense_Mutation p.G142E 0.36 deleterious(0) probably_damaging(0.973) TCGA-Z2-A8RT-06 X 106065364 106065364 C T TBC1D8B Missense_Mutation p.P173L 0.34 deleterious(0) probably_damaging(0.981) TCGA-Z2-A8RT-06 X 106171734 106171734 C T CLDN2 Silent p.S92S 0.38 TCGA-Z2-A8RT-06 X 106184811 106184811 A T MORC4 Silent p.T904T 0.46 TCGA-Z2-A8RT-06 X 106410904 106410904 G A NUP62CL Missense_Mutation p.L57F 0.32 tolerated(0.66) benign(0.067) TCGA-Z2-A8RT-06 X 106840751 106840751 G A FRMPD3 Missense_Mutation p.E581K 0.40 deleterious(0) benign(0.01) TCGA-Z2-A8RT-06 X 106845719 106845719 G A FRMPD3 Missense_Mutation p.E1517K 0.33 tolerated(0.05) probably_damaging(0.967) TCGA-Z2-A8RT-06 X 107224278 107224278 C T TEX13B 3'UTR 0.32 TCGA-Z2-A8RT-06 X 107320436 107320436 C T VSIG1 Missense_Mutation p.P366L 0.36 tolerated_low_confidence(0.28) unknown(0) TCGA-Z2-A8RT-06 X 107381150 107381150 C T ATG4A Missense_Mutation p.P222S 0.32 deleterious(0.03) probably_damaging(0.958) TCGA-Z2-A8RT-06 X 107414691 107414691 C T COL4A6 Missense_Mutation p.G1069E 0.37 probably_damaging(1) TCGA-Z2-A8RT-06 X 107866040 107866040 G A COL4A5 Missense_Mutation p.E968K 0.30 unknown(0) TCGA-Z2-A8RT-06 X 107978502 107978502 C T IRS4 Missense_Mutation p.R358K 0.39 deleterious(0) probably_damaging(0.98) TCGA-Z2-A8RT-06 X 108708506 108708506 C T GUCY2F Silent p.R299R 0.31 TCGA-Z2-A8RT-06 X 108780138 108780138 C T NXT2 Intron 0.40 TCGA-Z2-A8RT-06 X 108780238 108780238 G A NXT2 Missense_Mutation p.M56I 0.32 deleterious(0.01) benign(0.073) TCGA-Z2-A8RT-06 X 108926381 108926381 C T ACSL4 Missense_Mutation p.G112E 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 X 109416624 109416624 C T TMEM164 Missense_Mutation p.P280L 0.28 deleterious_low_confidence(0) possibly_damaging(0.49) TCGA-Z2-A8RT-06 X 109696104 109696104 G A RGAG1 Silent p.V753V 0.42 TCGA-Z2-A8RT-06 X 109698496 109698496 G A RGAG1 Missense_Mutation p.D1372N 0.38 tolerated_low_confidence(0.17) benign(0.092) TCGA-Z2-A8RT-06 X 109964727 109964727 C T CHRDL1 Silent p.V111V 0.42 TCGA-Z2-A8RT-06 X 110988027 110988027 C T ALG13 Missense_Mutation p.P943S 0.60 tolerated(0.35) benign(0.05) TCGA-Z2-A8RT-06 X 111155590 111155590 C T TRPC5 Missense_Mutation p.E277K 0.39 tolerated(0.59) possibly_damaging(0.824) TCGA-Z2-A8RT-06 X 11157366 11157366 C T ARHGAP6 Missense_Mutation p.D848N 0.57 tolerated_low_confidence(0.13) probably_damaging(0.922) TCGA-Z2-A8RT-06 X 11162022 11162022 G A ARHGAP6 Intron 0.47 TCGA-Z2-A8RT-06 X 111698457 111698457 C T ZCCHC16 Silent p.H167H 0.41 TCGA-Z2-A8RT-06 X 111698704 111698704 C T ZCCHC16 Missense_Mutation p.P250S 0.39 tolerated(0.23) possibly_damaging(0.836) TCGA-Z2-A8RT-06 X 11174744 11174744 A G ARHGAP6 Silent p.V604V 0.29 TCGA-Z2-A8RT-06 X 11316880 11316880 C T AMELX Silent p.L133L 0.33 TCGA-Z2-A8RT-06 X 11318744 11318744 A C AMELX 3'UTR 0.41 TCGA-Z2-A8RT-06 X 114536637 114536637 G A LUZP4 Missense_Mutation p.E58K 0.32 tolerated(0.81) benign(0.08) TCGA-Z2-A8RT-06 X 115304719 115304719 C T AGTR2 3'UTR 0.55 TCGA-Z2-A8RT-06 X 115572265 115572265 G A SLC6A14 Missense_Mutation p.G116S 0.35 deleterious(0.02) probably_damaging(1) TCGA-Z2-A8RT-06 X 11682365 11682365 G A ARHGAP6 Missense_Mutation p.S195F 0.43 deleterious(0) benign(0.169) TCGA-Z2-A8RT-06 X 117582938 117582938 A G WDR44 Silent p.K910K 0.39 TCGA-Z2-A8RT-06 X 117706357 117706357 G A DOCK11 Silent p.V369V 0.34 TCGA-Z2-A8RT-06 X 117722183 117722183 C T DOCK11 Missense_Mutation p.P627S 0.37 tolerated(0.31) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 117805046 117805046 G A DOCK11 Missense_Mutation p.E1713K 0.37 deleterious(0) possibly_damaging(0.825) TCGA-Z2-A8RT-06 X 117875052 117875052 C T IL13RA1 Missense_Mutation p.P54L 0.38 deleterious(0) probably_damaging(0.96) TCGA-Z2-A8RT-06 X 118112411 118112411 C A LONRF3 Silent p.R307R 0.36 TCGA-Z2-A8RT-06 X 118220601 118220601 T C KIAA1210 Missense_Mutation p.N1531S 0.35 tolerated(0.27) benign(0.003) TCGA-Z2-A8RT-06 X 118221301 118221301 A T KIAA1210 Missense_Mutation p.S1298T 0.34 tolerated(0.05) possibly_damaging(0.794) TCGA-Z2-A8RT-06 X 118602498 118602498 C T SLC25A5 Missense_Mutation p.S7F 0.61 deleterious(0) possibly_damaging(0.869) TCGA-Z2-A8RT-06 X 118750598 118750598 G A SEPT6 3'Flank 0.50 TCGA-Z2-A8RT-06 X 118797527 118797527 C T SEPT6 Missense_Mutation p.D87N 0.37 deleterious(0.02) benign(0.312) TCGA-Z2-A8RT-06 X 119005814 119005814 G A NDUFA1 5'UTR 0.41 TCGA-Z2-A8RT-06 X 119674257 119674257 T - CUL4B Frame_Shift_Del p.N553Tfs*11 0.22 TCGA-Z2-A8RT-06 X 120008972 120008972 C T CT47B1 Missense_Mutation p.E185K 0.42 deleterious(0.03) benign(0.177) TCGA-Z2-A8RT-06 X 122551337 122551337 G A GRIA3 Missense_Mutation p.G529S 0.42 deleterious(0) possibly_damaging(0.77) TCGA-Z2-A8RT-06 X 122778660 122778660 C T THOC2 Missense_Mutation p.G510E 0.26 deleterious(0.01) benign(0.007) TCGA-Z2-A8RT-06 X 123200039 123200039 C T STAG2 Missense_Mutation p.S704L 0.37 deleterious(0) benign(0.211) TCGA-Z2-A8RT-06 X 123224710 123224710 G A STAG2 Silent p.Q1158Q 0.31 TCGA-Z2-A8RT-06 X 123480532 123480532 G A SH2D1A Missense_Mutation p.E14K 0.37 tolerated(0.2) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 123630894 123630894 C T TENM1 Missense_Mutation p.G1223R 0.37 tolerated(0.18) probably_damaging(0.993) TCGA-Z2-A8RT-06 X 123838976 123838976 G A TENM1 Missense_Mutation p.S301F 0.41 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-Z2-A8RT-06 X 125686272 125686272 T C DCAF12L1 Missense_Mutation p.N107S 0.32 tolerated(0.45) probably_damaging(0.915) TCGA-Z2-A8RT-06 X 12736677 12736677 G A FRMPD4 Silent p.G1244G 0.40 TCGA-Z2-A8RT-06 X 12838861 12838861 C T PRPS2 Missense_Mutation p.A271V 0.38 tolerated(0.14) possibly_damaging(0.595) TCGA-Z2-A8RT-06 X 128632036 128632036 G A SMARCA1 Silent p.I430I 0.45 TCGA-Z2-A8RT-06 X 12905945 12905945 A C TLR7 Missense_Mutation p.N773T 0.39 tolerated(0.42) possibly_damaging(0.686) TCGA-Z2-A8RT-06 X 12906652 12906652 G A TLR7 Missense_Mutation p.G1009R 0.38 tolerated(0.5) benign(0.008) TCGA-Z2-A8RT-06 X 12906653 12906653 G A TLR7 Missense_Mutation p.G1009E 0.38 deleterious(0.04) benign(0.155) TCGA-Z2-A8RT-06 X 129264050 129264050 G A AIFM1 Silent p.V555V 0.38 TCGA-Z2-A8RT-06 X 12939333 12939333 C T TLR8 Missense_Mutation p.S725F 0.32 tolerated(0.22) benign(0.232) TCGA-Z2-A8RT-06 X 129801714 129801714 C T ENOX2 Missense_Mutation p.D262N 0.36 tolerated(0.1) benign(0.196) TCGA-Z2-A8RT-06 X 130215867 130215867 C T ARHGAP36 Silent p.F76F 0.36 TCGA-Z2-A8RT-06 X 130411075 130411075 C T IGSF1 Missense_Mutation p.E821K 0.37 tolerated(0.06) probably_damaging(0.987) TCGA-Z2-A8RT-06 X 130412541 130412541 G A IGSF1 Silent p.F650F 0.38 TCGA-Z2-A8RT-06 X 130415909 130415909 G A IGSF1 Missense_Mutation p.P419L 0.29 deleterious(0.01) possibly_damaging(0.628) TCGA-Z2-A8RT-06 X 131348387 131348387 C T RAP2C Missense_Mutation p.E121K 0.42 tolerated(0.1) benign(0.036) TCGA-Z2-A8RT-06 X 132159588 132159588 C T USP26 Silent p.E887E 0.32 TCGA-Z2-A8RT-06 X 132160054 132160054 A G USP26 Missense_Mutation p.F732S 0.38 tolerated(0.4) benign(0.037) TCGA-Z2-A8RT-06 X 132161807 132161807 T A USP26 Nonsense_Mutation p.K148* 0.41 TCGA-Z2-A8RT-06 X 132162068 132162068 G A USP26 Missense_Mutation p.L61F 0.27 tolerated(0.34) benign(0.037) TCGA-Z2-A8RT-06 X 132162087 132162087 A T USP26 Missense_Mutation p.D54E 0.51 deleterious(0.01) benign(0.304) TCGA-Z2-A8RT-06 X 132162088 132162088 T A USP26 Missense_Mutation p.D54V 0.51 deleterious(0) possibly_damaging(0.68) TCGA-Z2-A8RT-06 X 132439937 132439937 C T GPC4 Missense_Mutation p.G340R 0.38 deleterious(0) possibly_damaging(0.61) TCGA-Z2-A8RT-06 X 134421239 134421239 C T ZNF75D Missense_Mutation p.G455R 0.39 deleterious(0) possibly_damaging(0.818) TCGA-Z2-A8RT-06 X 134715551 134715551 C T DDX26B Missense_Mutation p.S859L 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-Z2-A8RT-06 X 134932928 134932928 G A CT45A4 Missense_Mutation p.P19L 0.84 tolerated(0.19) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 135047141 135047141 C T MMGT1 3'UTR 0.34 TCGA-Z2-A8RT-06 X 135067698 135067698 C T SLC9A6 Missense_Mutation p.R13C 0.36 tolerated_low_confidence(0.05) unknown(0) TCGA-Z2-A8RT-06 X 135390998 135390998 T A GPR112 Missense_Mutation p.F21Y 0.38 deleterious(0.04) benign(0.003) TCGA-Z2-A8RT-06 X 135428708 135428708 G A GPR112 Missense_Mutation p.G948E 0.40 deleterious(0.04) benign(0.227) TCGA-Z2-A8RT-06 X 135430805 135430805 C T GPR112 Missense_Mutation p.S1647F 0.42 tolerated(0.12) benign(0.012) TCGA-Z2-A8RT-06 X 135488066 135488066 T C GPR112 Missense_Mutation p.F2957S 0.38 deleterious(0) probably_damaging(0.989) TCGA-Z2-A8RT-06 X 135631126 135631126 G A VGLL1 Missense_Mutation p.S198N 0.32 deleterious(0.05) benign(0.223) TCGA-Z2-A8RT-06 X 135638768 135638768 G A VGLL1 3'UTR 0.51 TCGA-Z2-A8RT-06 X 137715035 137715035 G A FGF13 Silent p.S248S 0.40 TCGA-Z2-A8RT-06 X 138886728 138886728 C T ATP11C Missense_Mutation p.E156K 0.44 deleterious(0) possibly_damaging(0.868) TCGA-Z2-A8RT-06 X 139038210 139038210 G A CXorf66 Missense_Mutation p.R311C 0.33 deleterious(0.05) benign(0.193) TCGA-Z2-A8RT-06 X 139866601 139866601 C T CDR1 5'UTR 0.43 TCGA-Z2-A8RT-06 X 1409305 1409305 G T CSF2RA Silent p.L183L 0.35 TCGA-Z2-A8RT-06 X 140984812 140984812 T A MAGEC3 Missense_Mutation p.L423H 0.27 tolerated(0.15) possibly_damaging(0.54) TCGA-Z2-A8RT-06 X 140993302 140993302 C T MAGEC1 Missense_Mutation p.P38S 0.39 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-Z2-A8RT-06 X 140994739 140994739 C T MAGEC1 Missense_Mutation p.P517S 0.39 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-Z2-A8RT-06 X 140996187 140996187 C T MAGEC1 Silent p.L999L 0.37 TCGA-Z2-A8RT-06 X 140996495 140996495 C T MAGEC1 Missense_Mutation p.S1102F 0.34 deleterious(0.04) unknown(0) TCGA-Z2-A8RT-06 X 1413299 1413299 C T CSF2RA Missense_Mutation p.T242I 0.42 deleterious(0) probably_damaging(0.974) TCGA-Z2-A8RT-06 X 142113828 142113828 G A SPANXN4 Missense_Mutation p.E10K 0.54 deleterious_low_confidence(0.03) benign(0.017) TCGA-Z2-A8RT-06 X 142718359 142718359 C T SLITRK4 Missense_Mutation p.R189K 0.42 deleterious(0.03) probably_damaging(0.987) TCGA-Z2-A8RT-06 X 144905397 144905397 C T SLITRK2 Missense_Mutation p.S485F 0.37 deleterious(0) benign(0.372) TCGA-Z2-A8RT-06 X 144909327 144909327 T C TMEM257 Silent p.A44A 0.41 TCGA-Z2-A8RT-06 X 14625263 14625263 G A GLRA2 Silent p.T196T 0.39 TCGA-Z2-A8RT-06 X 147010284 147010284 C T FMR1 Silent p.F126F 0.39 TCGA-Z2-A8RT-06 X 148685728 148685728 G A TMEM185A Silent p.I144I 0.29 TCGA-Z2-A8RT-06 X 150832773 150832773 G A PASD1 Missense_Mutation p.D342N 0.40 tolerated(0.1) probably_damaging(0.909) TCGA-Z2-A8RT-06 X 151092435 151092435 C T MAGEA4 Missense_Mutation p.P100L 0.37 deleterious(0.01) benign(0.022) TCGA-Z2-A8RT-06 X 151123098 151123098 C G GABRE 3'UTR 0.54 TCGA-Z2-A8RT-06 X 151283625 151283625 C T RP11-1007I13.4 RNA 0.38 TCGA-Z2-A8RT-06 X 151303561 151303561 C T MAGEA10 Missense_Mutation p.E178K 0.32 tolerated(1) benign(0.157) TCGA-Z2-A8RT-06 X 151424410 151424410 C T GABRA3 Missense_Mutation p.G131S 0.36 tolerated(0.43) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 151817756 151817756 C T GABRQ Silent p.F190F 0.38 TCGA-Z2-A8RT-06 X 151896321 151896321 C T MAGEA12 3'Flank 0.40 TCGA-Z2-A8RT-06 X 151935464 151935464 C T MAGEA3 Missense_Mutation p.E235K 0.38 tolerated(0.85) probably_damaging(0.913) TCGA-Z2-A8RT-06 X 152091338 152091338 G A ZNF185 Missense_Mutation p.G271E 0.35 tolerated(0.33) benign(0.03) TCGA-Z2-A8RT-06 X 152482088 152482088 C T MAGEA1 Missense_Mutation p.G308E 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-Z2-A8RT-06 X 152482357 152482357 C T MAGEA1 Silent p.L218L 0.35 TCGA-Z2-A8RT-06 X 152823570 152823570 G A ATP2B3 Missense_Mutation p.G812S 0.46 deleterious(0.01) possibly_damaging(0.899) TCGA-Z2-A8RT-06 X 152845710 152845710 C T ATP2B3 Missense_Mutation p.S1206F 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-Z2-A8RT-06 X 153042352 153042352 G A PLXNB3 Missense_Mutation p.G1638E 0.32 deleterious(0) possibly_damaging(0.877) TCGA-Z2-A8RT-06 X 153221702 153221702 C T HCFC1 Silent p.S932S 0.45 TCGA-Z2-A8RT-06 X 153225332 153225332 G A HCFC1 Silent p.P455P 0.38 TCGA-Z2-A8RT-06 X 153628248 153628248 A G RPL10 Missense_Mutation p.I99V 0.36 tolerated(0.06) benign(0.045) TCGA-Z2-A8RT-06 X 153689618 153689618 C T PLXNA3 Silent p.F258F 0.34 TCGA-Z2-A8RT-06 X 153697426 153697426 G A PLXNA3 Missense_Mutation p.E1488K 0.45 deleterious(0.03) benign(0.042) TCGA-Z2-A8RT-06 X 153697443 153697443 C T PLXNA3 Silent p.V1493V 0.48 TCGA-Z2-A8RT-06 X 153761309 153761309 G A G6PD Missense_Mutation p.A330V 0.31 tolerated(0.45) benign(0.001) TCGA-Z2-A8RT-06 X 153762295 153762295 C T G6PD Missense_Mutation p.G272D 0.31 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 1540670 1540670 A G ASMTL Missense_Mutation p.F376L 0.42 tolerated(0.71) benign(0.004) TCGA-Z2-A8RT-06 X 154115592 154115592 C T F8A1 Missense_Mutation p.P315S 0.26 tolerated(0.55) possibly_damaging(0.803) TCGA-Z2-A8RT-06 X 154124377 154124377 C T F8 Missense_Mutation p.R2135Q 0.29 deleterious(0.03) benign(0.251) TCGA-Z2-A8RT-06 X 154227797 154227797 C T F8 Silent p.T74T 0.36 TCGA-Z2-A8RT-06 X 154255273 154255273 C A FUNDC2 Silent p.S20S 0.42 TCGA-Z2-A8RT-06 X 154305511 154305511 G A BRCC3 Missense_Mutation p.D88N 0.42 deleterious(0) probably_damaging(0.967) TCGA-Z2-A8RT-06 X 154493697 154493697 G A RAB39B 5'UTR 0.46 TCGA-Z2-A8RT-06 X 155004416 155004416 G A SPRY3 3'UTR 0.36 TCGA-Z2-A8RT-06 X 155234211 155234211 A G IL9R Missense_Mutation p.K187R 0.35 tolerated(1) benign(0.002) TCGA-Z2-A8RT-06 X 155239646 155239646 G A IL9R Missense_Mutation p.G380R 0.25 deleterious(0.03) benign(0.379) TCGA-Z2-A8RT-06 X 155239647 155239647 G A IL9R Missense_Mutation p.G380E 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-Z2-A8RT-06 X 15591566 15591566 C T ACE2 Missense_Mutation p.E489K 0.44 deleterious(0.02) probably_damaging(0.99) TCGA-Z2-A8RT-06 X 1584999 1584999 G A P2RY8 Silent p.L151L 0.18 TCGA-Z2-A8RT-06 X 16170603 16170603 G A GRPR Silent p.R330R 0.42 TCGA-Z2-A8RT-06 X 17744434 17744434 G A NHS Silent p.Q715Q 0.35 TCGA-Z2-A8RT-06 X 17744957 17744957 G A NHS Missense_Mutation p.E890K 0.42 tolerated(0.16) possibly_damaging(0.492) TCGA-Z2-A8RT-06 X 17745605 17745605 C T NHS Missense_Mutation p.P1106S 0.33 tolerated(0.29) benign(0.023) TCGA-Z2-A8RT-06 X 17762188 17762188 C T SCML1 Intron 0.25 TCGA-Z2-A8RT-06 X 17768086 17768086 G A SCML1 Missense_Mutation p.E126K 0.44 tolerated(0.2) benign(0.057) TCGA-Z2-A8RT-06 X 17771511 17771511 G A SCML1 Silent p.%3D 0.39 TCGA-Z2-A8RT-06 X 18194168 18194168 C T BEND2 Missense_Mutation p.G559E 0.39 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 18264901 18264901 G A SCML2 Missense_Mutation p.L540F 0.40 tolerated(0.89) benign(0.008) TCGA-Z2-A8RT-06 X 18283741 18283741 G A SCML2 Silent p.I304I 0.38 TCGA-Z2-A8RT-06 X 18627654 18627654 G A CDKL5 Missense_Mutation p.D706N 0.40 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-Z2-A8RT-06 X 19018008 19018008 C T GPR64 Silent p.G767G 0.44 TCGA-Z2-A8RT-06 X 19568111 19568111 G A SH3KBP1 Missense_Mutation p.P492L 0.27 tolerated(0.06) possibly_damaging(0.636) TCGA-Z2-A8RT-06 X 19587306 19587306 C T SH3KBP1 Silent p.R433R 0.29 TCGA-Z2-A8RT-06 X 19971152 19971152 A T CXorf23 Nonsense_Mutation p.L528* 0.37 TCGA-Z2-A8RT-06 X 20187579 20187579 C T RPS6KA3 Missense_Mutation p.E462K 0.38 deleterious(0.01) probably_damaging(1) TCGA-Z2-A8RT-06 X 21675787 21675787 G A KLHL34 Silent p.F40F 0.26 TCGA-Z2-A8RT-06 X 22263484 22263484 G A PHEX Missense_Mutation p.R702Q 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 22292424 22292424 A G ZNF645 3'UTR 0.37 TCGA-Z2-A8RT-06 X 23019077 23019077 C T DDX53 Silent p.V301V 0.32 TCGA-Z2-A8RT-06 X 23410690 23410690 G A PTCHD1 Missense_Mutation p.R352K 0.38 deleterious(0) probably_damaging(0.987) TCGA-Z2-A8RT-06 X 23410994 23410994 G A PTCHD1 Silent p.K453K 0.40 TCGA-Z2-A8RT-06 X 23858451 23858451 G A APOO 3'UTR 0.31 TCGA-Z2-A8RT-06 X 24741369 24741369 C T POLA1 Silent p.F389F 0.37 TCGA-Z2-A8RT-06 X 24745084 24745084 G A POLA1 Missense_Mutation p.G470E 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-Z2-A8RT-06 X 25031154 25031154 C T ARX Missense_Mutation p.E320K 0.56 tolerated(0.06) benign(0.055) TCGA-Z2-A8RT-06 X 26157546 26157546 C T MAGEB18 Silent p.I148I 0.31 TCGA-Z2-A8RT-06 X 2779736 2779736 C T GYG2 Silent p.S368S 0.59 TCGA-Z2-A8RT-06 X 27839760 27839760 G A MAGEB10 Missense_Mutation p.E113K 0.29 tolerated(0.99) benign(0.036) TCGA-Z2-A8RT-06 X 27840431 27840431 C T MAGEB10 Silent p.S336S 0.36 TCGA-Z2-A8RT-06 X 2867537 2867537 G A ARSE Missense_Mutation p.P221L 0.45 tolerated(0.31) benign(0.006) TCGA-Z2-A8RT-06 X 29973534 29973534 G A IL1RAPL1 Missense_Mutation p.R563K 0.32 tolerated(1) benign(0.002) TCGA-Z2-A8RT-06 X 29973844 29973844 G A IL1RAPL1 Silent p.S666S 0.34 TCGA-Z2-A8RT-06 X 30237259 30237259 G A MAGEB2 Missense_Mutation p.D188N 0.48 tolerated(1) benign(0.008) TCGA-Z2-A8RT-06 X 30261101 30261101 G A MAGEB4 Missense_Mutation p.M283I 0.33 deleterious(0.01) benign(0.444) TCGA-Z2-A8RT-06 X 3030586 3030586 G A ARSF Missense_Mutation p.E588K 0.36 tolerated_low_confidence(0.33) benign(0.006) TCGA-Z2-A8RT-06 X 31090105 31090105 G A FTHL17 5'UTR 0.44 TCGA-Z2-A8RT-06 X 31893388 31893388 G A DMD Missense_Mutation p.H2339Y 0.59 benign(0.008) TCGA-Z2-A8RT-06 X 3227729 3227729 C T MXRA5 3'UTR 0.55 TCGA-Z2-A8RT-06 X 3227838 3227838 C T MXRA5 Silent p.Q2802Q 0.40 TCGA-Z2-A8RT-06 X 3228045 3228045 G A MXRA5 Silent p.P2733P 0.49 TCGA-Z2-A8RT-06 X 3228156 3228156 G A MXRA5 Silent p.L2696L 0.35 TCGA-Z2-A8RT-06 X 3239407 3239407 G A MXRA5 Missense_Mutation p.S1440F 0.29 tolerated(0.34) benign(0.401) TCGA-Z2-A8RT-06 X 3239950 3239950 G A MXRA5 Missense_Mutation p.P1259L 0.43 tolerated(0.43) benign(0) TCGA-Z2-A8RT-06 X 3241385 3241385 C T MXRA5 Missense_Mutation p.E781K 0.33 tolerated(0.1) benign(0.368) TCGA-Z2-A8RT-06 X 3242327 3242327 C T MXRA5 Missense_Mutation p.D467N 0.36 deleterious(0.04) possibly_damaging(0.647) TCGA-Z2-A8RT-06 X 3248248 3248248 A G MXRA5 Missense_Mutation p.F174L 0.48 tolerated(0.12) benign(0.085) TCGA-Z2-A8RT-06 X 32503054 32503054 C T DMD Missense_Mutation p.E929K 0.42 probably_damaging(0.915) TCGA-Z2-A8RT-06 X 34149499 34149499 C T FAM47A Silent p.G299G 0.34 TCGA-Z2-A8RT-06 X 34657476 34657476 G A TMEM47 Silent p.L85L 0.37 TCGA-Z2-A8RT-06 X 34961626 34961626 G A FAM47B Silent p.E226E 0.29 TCGA-Z2-A8RT-06 X 3573249 3573249 C T PRKX Silent p.L180L 0.40 TCGA-Z2-A8RT-06 X 35984858 35984858 G A CXorf22 Missense_Mutation p.M529I 0.37 tolerated(0.08) benign(0.149) TCGA-Z2-A8RT-06 X 38535064 38535064 C T TSPAN7 Missense_Mutation p.P183S 0.38 tolerated(0.23) benign(0.009) TCGA-Z2-A8RT-06 X 38664785 38664785 C T MID1IP1 3'UTR 0.48 TCGA-Z2-A8RT-06 X 39931877 39931877 C T BCOR Missense_Mutation p.D908N 0.48 tolerated(0.06) possibly_damaging(0.59) TCGA-Z2-A8RT-06 X 41043699 41043699 C T USP9X Missense_Mutation p.S1110F 0.41 deleterious(0.04) benign(0.001) TCGA-Z2-A8RT-06 X 41333070 41333070 G A NYX Missense_Mutation p.D122N 0.50 tolerated(0.94) benign(0.109) TCGA-Z2-A8RT-06 X 41333561 41333561 G A NYX Silent p.L285L 0.38 TCGA-Z2-A8RT-06 X 43817932 43817932 G A NDP 5'UTR 0.38 TCGA-Z2-A8RT-06 X 46719525 46719525 C T RP2 Missense_Mutation p.L291F 0.34 tolerated(0.43) benign(0.007) TCGA-Z2-A8RT-06 X 47035967 47035967 G A RBM10 Silent p.E215E 0.43 TCGA-Z2-A8RT-06 X 47044742 47044742 G A RBM10 Silent p.P714P 0.25 TCGA-Z2-A8RT-06 X 47045137 47045137 G A RBM10 Missense_Mutation p.R793Q 0.29 deleterious(0.02) benign(0.313) TCGA-Z2-A8RT-06 X 47101852 47101852 C G USP11 Silent p.V516V 0.46 TCGA-Z2-A8RT-06 X 47487013 47487013 G A CFP Missense_Mutation p.P144L 0.48 deleterious(0.01) possibly_damaging(0.901) TCGA-Z2-A8RT-06 X 47836000 47836000 A T ZNF182 Missense_Mutation p.S496T 0.43 tolerated(0.23) possibly_damaging(0.461) TCGA-Z2-A8RT-06 X 47918033 47918033 C T ZNF630 Missense_Mutation p.E600K 0.38 tolerated(0.55) benign(0.018) TCGA-Z2-A8RT-06 X 47918898 47918898 C T ZNF630 Silent p.R311R 0.33 TCGA-Z2-A8RT-06 X 48270265 48270265 C T SSX4B Missense_Mutation p.E38K 0.18 tolerated(0.16) benign(0.255) TCGA-Z2-A8RT-06 X 48326288 48326288 C T SLC38A5 Missense_Mutation p.M8I 0.34 tolerated(0.29) benign(0.001) TCGA-Z2-A8RT-06 X 48547760 48547760 G A WAS Missense_Mutation p.E464K 0.29 deleterious(0.03) unknown(0) TCGA-Z2-A8RT-06 X 48664821 48664821 G A HDAC6 Missense_Mutation p.G162R 0.33 tolerated(0.44) benign(0.008) TCGA-Z2-A8RT-06 X 48825937 48825937 G A KCND1 Silent p.L248L 0.31 TCGA-Z2-A8RT-06 X 48830576 48830576 G A GRIPAP1 3'UTR 0.39 TCGA-Z2-A8RT-06 X 48888106 48888106 C T TFE3 Missense_Mutation p.E431K 0.43 deleterious(0) benign(0.292) TCGA-Z2-A8RT-06 X 49065777 49065777 T G CACNA1F Missense_Mutation p.E1644A 0.24 tolerated(0.12) benign(0.01) TCGA-Z2-A8RT-06 X 49084530 49084530 G A CACNA1F Silent p.F362F 0.37 TCGA-Z2-A8RT-06 X 49143270 49143270 C T PPP1R3F Silent p.L706L 0.33 TCGA-Z2-A8RT-06 X 49855487 49855487 C T CLCN5 Silent p.I768I 0.35 TCGA-Z2-A8RT-06 X 49856867 49856867 C T CLCN5 Silent p.L814L 0.38 TCGA-Z2-A8RT-06 X 50054494 50054494 G A CCNB3 Missense_Mutation p.E1109K 0.55 tolerated(0.1) possibly_damaging(0.626) TCGA-Z2-A8RT-06 X 50378350 50378350 C T SHROOM4 Silent p.R241R 0.21 TCGA-Z2-A8RT-06 X 51151181 51151181 C T CXorf67 Missense_Mutation p.S438F 0.41 tolerated(0.25) possibly_damaging(0.857) TCGA-Z2-A8RT-06 X 51151414 51151414 G A CXorf67 3'UTR 0.24 TCGA-Z2-A8RT-06 X 51487927 51487927 C T GSPT2 Missense_Mutation p.S402L 0.41 tolerated(0.32) benign(0.02) TCGA-Z2-A8RT-06 X 51488523 51488523 C T GSPT2 Missense_Mutation p.P601S 0.34 deleterious(0.03) benign(0.254) TCGA-Z2-A8RT-06 X 53222412 53222412 G A KDM5C Nonsense_Mutation p.R1474* 0.42 TCGA-Z2-A8RT-06 X 54112157 54112157 C T FAM120C Missense_Mutation p.G944R 0.35 deleterious(0) probably_damaging(0.986) TCGA-Z2-A8RT-06 X 54208993 54208993 G A FAM120C Silent p.F213F 0.45 TCGA-Z2-A8RT-06 X 54321102 54321102 A G WNK3 Missense_Mutation p.L526S 0.31 tolerated(0.1) benign(0.01) TCGA-Z2-A8RT-06 X 54784600 54784600 G A ITIH6 Missense_Mutation p.S636L 0.44 tolerated(0.12) benign(0.002) TCGA-Z2-A8RT-06 X 54964044 54964044 G A PFKFB1 Silent p.F404F 0.37 TCGA-Z2-A8RT-06 X 55042066 55042066 C T ALAS2 Silent p.G371G 0.37 TCGA-Z2-A8RT-06 X 55116515 55116515 C T PAGE2 Missense_Mutation p.S21F 0.32 tolerated(0.72) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 55247042 55247042 C T PAGE5 Missense_Mutation p.P4S 0.26 tolerated_low_confidence(0.79) benign(0.004) TCGA-Z2-A8RT-06 X 57515329 57515329 A T FAAH2 Missense_Mutation p.K521N 0.47 tolerated(0.07) benign(0.212) TCGA-Z2-A8RT-06 X 5811132 5811132 T C NLGN4X Missense_Mutation p.N726S 0.33 tolerated_low_confidence(0.39) benign(0.002) TCGA-Z2-A8RT-06 X 5811455 5811455 C T NLGN4X Missense_Mutation p.M618I 0.40 tolerated(0.22) benign(0.004) TCGA-Z2-A8RT-06 X 5821746 5821746 C T NLGN4X Missense_Mutation p.E325K 0.38 deleterious(0.03) probably_damaging(0.969) TCGA-Z2-A8RT-06 X 63412380 63412380 C T AMER1 Missense_Mutation p.E263K 0.37 tolerated(0.24) benign(0.006) TCGA-Z2-A8RT-06 X 63445257 63445257 G A ASB12 Missense_Mutation p.L92F 0.28 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 64708999 64708999 G T ZC3H12B Missense_Mutation p.K106N 0.36 deleterious(0.02) possibly_damaging(0.488) TCGA-Z2-A8RT-06 X 64743526 64743526 G A LAS1L Silent p.F454F 0.41 TCGA-Z2-A8RT-06 X 64749133 64749133 C T LAS1L Missense_Mutation p.A269T 0.33 tolerated(0.17) benign(0.341) TCGA-Z2-A8RT-06 X 64957169 64957169 C T MSN Missense_Mutation p.S407F 0.36 deleterious(0.01) possibly_damaging(0.515) TCGA-Z2-A8RT-06 X 65393563 65393563 C T HEPH Missense_Mutation p.T236I 0.43 deleterious(0.01) possibly_damaging(0.903) TCGA-Z2-A8RT-06 X 65819661 65819661 C T EDA2R Missense_Mutation p.E208K 0.30 tolerated(0.33) possibly_damaging(0.477) TCGA-Z2-A8RT-06 X 65825068 65825068 C T EDA2R Missense_Mutation p.D30N 0.36 deleterious(0) probably_damaging(0.977) TCGA-Z2-A8RT-06 X 66766130 66766130 C T AR Missense_Mutation p.P381L 0.32 deleterious_low_confidence(0.03) benign(0.009) TCGA-Z2-A8RT-06 X 66863213 66863213 G A AR Missense_Mutation p.G578R 0.35 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 67293129 67293129 G A OPHN1 Missense_Mutation p.P567S 0.42 tolerated(0.27) benign(0.344) TCGA-Z2-A8RT-06 X 67433776 67433776 G A OPHN1 Silent p.F175F 0.49 TCGA-Z2-A8RT-06 X 67518858 67518858 C T OPHN1 Missense_Mutation p.D79N 0.39 deleterious(0) probably_damaging(0.998) TCGA-Z2-A8RT-06 X 68381296 68381296 G A PJA1 Missense_Mutation p.P596S 0.27 deleterious(0.03) possibly_damaging(0.854) TCGA-Z2-A8RT-06 X 68381297 68381297 G A PJA1 Silent p.C595C 0.27 TCGA-Z2-A8RT-06 X 68382700 68382700 C T PJA1 Missense_Mutation p.E128K 0.44 tolerated(0.07) possibly_damaging(0.459) TCGA-Z2-A8RT-06 X 68749700 68749700 C T FAM155B Silent p.L440L 0.34 TCGA-Z2-A8RT-06 X 69282713 69282713 C T OTUD6A Silent p.F113F 0.27 TCGA-Z2-A8RT-06 X 69478535 69478535 G A P2RY4 Nonsense_Mutation p.R314* 0.47 TCGA-Z2-A8RT-06 X 69902620 69902620 C T TEX11 Missense_Mutation p.E369K 0.44 tolerated(0.1) benign(0.398) TCGA-Z2-A8RT-06 X 70149565 70149565 C T SLC7A3 Missense_Mutation p.G95S 0.38 deleterious(0.05) possibly_damaging(0.856) TCGA-Z2-A8RT-06 X 70316485 70316485 C T FOXO4 Missense_Mutation p.P36L 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-Z2-A8RT-06 X 70321559 70321559 G A FOXO4 Silent p.E493E 0.26 TCGA-Z2-A8RT-06 X 70351957 70351957 C T MED12 Missense_Mutation p.A1385V 0.29 benign(0.258) TCGA-Z2-A8RT-06 X 70516849 70516849 G A NONO Missense_Mutation p.E299K 0.23 deleterious(0) possibly_damaging(0.667) TCGA-Z2-A8RT-06 X 70825576 70825576 C G ACRC Missense_Mutation p.T488S 0.57 unknown(0) TCGA-Z2-A8RT-06 X 7177677 7177677 C T STS Missense_Mutation p.L229F 0.38 tolerated(0.71) benign(0.061) TCGA-Z2-A8RT-06 X 71802309 71802309 C T PHKA1 Missense_Mutation p.G1146E 0.35 deleterious(0.02) probably_damaging(0.923) TCGA-Z2-A8RT-06 X 71895985 71895985 C T PHKA1 Missense_Mutation p.E185K 0.36 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 X 71895986 71895986 C A PHKA1 Missense_Mutation p.W184C 0.36 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 73041825 73041825 G A XIST RNA 0.38 TCGA-Z2-A8RT-06 X 73065373 73065373 C T XIST RNA 0.34 TCGA-Z2-A8RT-06 X 73422973 73422973 G A RP3-368A4.5 RNA 0.36 TCGA-Z2-A8RT-06 X 73524621 73524621 C T ZCCHC13 3'UTR 0.46 TCGA-Z2-A8RT-06 X 73960458 73960458 C T KIAA2022 Missense_Mutation p.E1312K 0.39 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 X 74698810 74698810 G A ZDHHC15 Silent p.L58L 0.35 TCGA-Z2-A8RT-06 X 76711938 76711938 C T FGF16 Silent p.F92F 0.38 TCGA-Z2-A8RT-06 X 76944367 76944367 G A ATRX Missense_Mutation p.H180Y 0.38 probably_damaging(0.981) TCGA-Z2-A8RT-06 X 77158151 77158151 C T COX7B Nonsense_Mutation p.Q18* 0.38 TCGA-Z2-A8RT-06 X 77225030 77225030 C T PGAM4 Missense_Mutation p.E36K 0.42 tolerated(0.33) benign(0.002) TCGA-Z2-A8RT-06 X 77264662 77264662 G A ATP7A Missense_Mutation p.G591R 0.43 deleterious(0) probably_damaging(1) TCGA-Z2-A8RT-06 X 77528190 77528190 G A CYSLTR1 3'UTR 0.35 TCGA-Z2-A8RT-06 X 77913933 77913933 G A ZCCHC5 5'UTR 0.38 TCGA-Z2-A8RT-06 X 78216004 78216004 G A P2RY10 Splice_Site 0.36 TCGA-Z2-A8RT-06 X 79698849 79698849 C T FAM46D Missense_Mutation p.P271S 0.33 tolerated(0.25) possibly_damaging(0.687) TCGA-Z2-A8RT-06 X 79699086 79699086 C T FAM46D Nonsense_Mutation p.Q350* 0.34 TCGA-Z2-A8RT-06 X 80049196 80049196 C T BRWD3 Missense_Mutation p.E86K 0.39 deleterious(0.02) possibly_damaging(0.694) TCGA-Z2-A8RT-06 X 82764266 82764266 G A POU3F4 Missense_Mutation p.A312T 0.53 deleterious(0) probably_damaging(0.995) TCGA-Z2-A8RT-06 X 83128147 83128147 C T CYLC1 Missense_Mutation p.S144F 0.41 tolerated(0.68) possibly_damaging(0.683) TCGA-Z2-A8RT-06 X 83351311 83351311 G A RPS6KA6 Missense_Mutation p.P621L 0.32 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 X 83351312 83351312 G A RPS6KA6 Missense_Mutation p.P621S 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-Z2-A8RT-06 X 83362701 83362701 G A RPS6KA6 Silent p.F347F 0.42 TCGA-Z2-A8RT-06 X 83362702 83362702 A T RPS6KA6 Missense_Mutation p.F347Y 0.41 deleterious(0.02) benign(0.355) TCGA-Z2-A8RT-06 X 83442910 83442910 C T RPS6KA6 5'UTR 0.34 TCGA-Z2-A8RT-06 X 84342645 84342645 C T APOOL Silent p.S256S 0.45 TCGA-Z2-A8RT-06 X 84525682 84525682 G A ZNF711 Silent p.Q378Q 0.28 TCGA-Z2-A8RT-06 X 84525835 84525835 C T ZNF711 Silent p.F429F 0.46 TCGA-Z2-A8RT-06 X 84537135 84537135 G A POF1B Intron 0.42 TCGA-Z2-A8RT-06 X 84561186 84561186 C T POF1B Splice_Site p.X439_splice 0.26 TCGA-Z2-A8RT-06 X 84634232 84634232 G A POF1B Silent p.S76S 0.30 TCGA-Z2-A8RT-06 X 85404021 85404021 G A DACH2 Missense_Mutation p.G133R 0.37 deleterious(0) probably_damaging(0.991) TCGA-Z2-A8RT-06 X 8591651 8591651 C T KAL1 Missense_Mutation p.E106K 0.33 deleterious(0.02) benign(0.002) TCGA-Z2-A8RT-06 X 85994818 85994818 C T DACH2 Silent p.T391T 0.33 TCGA-Z2-A8RT-06 X 86868965 86868965 C T KLHL4 Missense_Mutation p.R170C 0.35 deleterious(0.02) benign(0.008) TCGA-Z2-A8RT-06 X 86877265 86877265 G A KLHL4 Missense_Mutation p.E327K 0.31 deleterious(0) probably_damaging(0.999) TCGA-Z2-A8RT-06 X 8993586 8993586 A G FAM9B Silent p.F177F 0.38 TCGA-Z2-A8RT-06 X 91090656 91090656 G A PCDH11X Silent p.L51L 0.41 TCGA-Z2-A8RT-06 X 91133877 91133877 A G PCDH11X Missense_Mutation p.N880D 0.29 tolerated(0.14) possibly_damaging(0.777) TCGA-Z2-A8RT-06 X 9863155 9863155 G A SHROOM2 Missense_Mutation p.G403R 0.42 tolerated(0.12) probably_damaging(0.979) TCGA-Z2-A8RT-06 X 9900234 9900234 C T SHROOM2 Missense_Mutation p.R971W 0.39 tolerated(0.14) benign(0.061) TCGA-Z2-A8RT-06 X 9912766 9912766 C T SHROOM2 Missense_Mutation p.T1466I 0.45 deleterious(0) benign(0.378) TCGA-Z2-A8RT-06 X 9912767 9912767 C T SHROOM2 Silent p.T1466T 0.44 TCGA-Z2-AA3S-06 10 129537084 129537084 C T FOXI2 Missense_Mutation p.S271F 0.55 deleterious(0.01) possibly_damaging(0.831) TCGA-Z2-AA3S-06 10 27702885 27702885 C T PTCHD3 Missense_Mutation p.E99K 0.85 tolerated(0.82) possibly_damaging(0.486) TCGA-Z2-AA3S-06 10 29762858 29762858 T G SVIL Missense_Mutation p.Y1813S 0.61 deleterious(0) probably_damaging(0.973) TCGA-Z2-AA3S-06 10 61112112 61112112 C T FAM13C Missense_Mutation p.R81Q 0.78 deleterious_low_confidence(0.01) possibly_damaging(0.559) TCGA-Z2-AA3S-06 10 95719038 95719038 G A PIPSL RNA 0.83 TCGA-Z2-AA3S-06 11 120998696 120998696 C T TECTA Silent p.N670N 0.56 TCGA-Z2-AA3S-06 11 121437699 121437699 G A SORL1 Missense_Mutation p.A1034T 0.21 deleterious(0.01) benign(0.211) TCGA-Z2-AA3S-06 11 124489551 124489551 G A PANX3 Missense_Mutation p.R300Q 0.34 tolerated(0.63) benign(0.42) TCGA-Z2-AA3S-06 11 125647824 125647824 G A PATE2 Silent p.S50S 0.27 TCGA-Z2-AA3S-06 11 13443190 13443191 - AC BTBD10 Frame_Shift_Ins p.E100Lfs*65 0.28 TCGA-Z2-AA3S-06 11 31086047 31086047 C T DCDC1 Missense_Mutation p.E854K 0.42 tolerated(0.26) benign(0.133) TCGA-Z2-AA3S-06 11 33572772 33572772 C T KIAA1549L Missense_Mutation p.P933S 0.34 tolerated(0.09) benign(0.125) TCGA-Z2-AA3S-06 11 33572773 33572773 C T KIAA1549L Missense_Mutation p.P933L 0.38 tolerated(0.21) benign(0.052) TCGA-Z2-AA3S-06 11 43852465 43852465 C T HSD17B12 Intron 0.48 TCGA-Z2-AA3S-06 11 48328419 48328419 C T OR4S1 Silent p.S215S 0.41 TCGA-Z2-AA3S-06 11 48346714 48346714 C T OR4C3 Silent p.I74I 0.27 TCGA-Z2-AA3S-06 11 5364499 5364499 C T OR51B5 Missense_Mutation p.D86N 0.53 tolerated(1) benign(0.004) TCGA-Z2-AA3S-06 11 58207508 58207508 C T OR5B12 Silent p.G39G 0.52 TCGA-Z2-AA3S-06 11 60184374 60184374 G A MS4A14 Missense_Mutation p.E678K 0.41 tolerated(0.57) benign(0.021) TCGA-Z2-AA3S-06 11 66358560 66358560 C T CCDC87 Missense_Mutation p.D643N 0.33 tolerated(0.16) benign(0.006) TCGA-Z2-AA3S-06 11 7059848 7059848 C T NLRP14 Missense_Mutation p.P11S 0.39 tolerated(1) benign(0.096) TCGA-Z2-AA3S-06 11 800543 800543 C T PIDD Missense_Mutation p.D681N 0.33 deleterious(0.01) possibly_damaging(0.786) TCGA-Z2-AA3S-06 11 89768460 89768460 C T TRIM49C Silent p.T27T 0.47 TCGA-Z2-AA3S-06 11 92532300 92532300 C T FAT3 Missense_Mutation p.P2041S 0.56 benign(0.192) TCGA-Z2-AA3S-06 12 102140885 102140885 C A GNPTAB 3'UTR 0.40 TCGA-Z2-AA3S-06 12 106461211 106461211 C T NUAK1 Missense_Mutation p.G452E 0.53 deleterious(0.03) benign(0.19) TCGA-Z2-AA3S-06 12 112623174 112623174 G A HECTD4 Missense_Mutation p.S3053F 0.53 probably_damaging(0.924) TCGA-Z2-AA3S-06 12 115117766 115117766 G A TBX3 Silent p.F223F 0.32 TCGA-Z2-AA3S-06 12 117652985 117652985 G A NOS1 3'Flank 0.31 TCGA-Z2-AA3S-06 12 12938594 12938594 G A APOLD1 Intron 0.50 TCGA-Z2-AA3S-06 12 47471774 47471774 C T AMIGO2 Missense_Mutation p.E338K 0.40 tolerated(0.34) benign(0.009) TCGA-Z2-AA3S-06 12 48389060 48389060 G A COL2A1 Missense_Mutation p.P247L 0.33 unknown(0) TCGA-Z2-AA3S-06 12 49956831 49956831 G A MCRS1 Missense_Mutation p.A266V 0.50 tolerated(0.31) benign(0.003) TCGA-Z2-AA3S-06 12 56492190 56492190 C T ERBB3 Intron 0.60 TCGA-Z2-AA3S-06 12 57581168 57581168 C T LRP1 Silent p.F2320F 0.48 TCGA-Z2-AA3S-06 12 64679780 64679780 C T C12orf56 Missense_Mutation p.D232N 0.43 tolerated(0.28) benign(0.138) TCGA-Z2-AA3S-06 12 66788081 66788081 T G GRIP1 Missense_Mutation p.Y627S 0.40 deleterious(0.01) benign(0.401) TCGA-Z2-AA3S-06 12 91502198 91502198 C T LUM Missense_Mutation p.E187K 0.39 tolerated(0.12) benign(0.22) TCGA-Z2-AA3S-06 12 95604226 95604226 C T FGD6 Silent p.G278G 0.47 TCGA-Z2-AA3S-06 13 25458183 25458183 G A CENPJ Missense_Mutation p.P1248S 0.41 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3S-06 13 37269515 37269515 C T SERTM1 Silent p.S100S 0.34 TCGA-Z2-AA3S-06 14 19377669 19377669 G A OR11H12 Missense_Mutation p.E26K 0.32 tolerated(0.08) benign(0.067) TCGA-Z2-AA3S-06 14 20344762 20344762 C T OR4K2 Silent p.I112I 0.41 TCGA-Z2-AA3S-06 14 21993554 21993554 C T SALL2 Missense_Mutation p.G103E 0.42 tolerated(0.07) benign(0.384) TCGA-Z2-AA3S-06 14 23374452 23374452 G A RBM23 Missense_Mutation p.R193C 0.43 deleterious(0) probably_damaging(0.941) TCGA-Z2-AA3S-06 14 24518541 24518541 G A LRRC16B 5'Flank 0.31 TCGA-Z2-AA3S-06 14 24884723 24884723 C T NYNRIN Silent p.I1256I 0.50 TCGA-Z2-AA3S-06 14 58785277 58785277 G A ARID4A Missense_Mutation p.E98K 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-AA3S-06 14 63447847 63447847 C T KCNH5 Missense_Mutation p.A229T 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-Z2-AA3S-06 14 66028260 66028260 G A FUT8 5'UTR 0.46 TCGA-Z2-AA3S-06 14 75329636 75329636 C T PROX2 Intron 0.42 TCGA-Z2-AA3S-06 14 75330403 75330403 G A PROX2 Silent p.V45V 0.41 TCGA-Z2-AA3S-06 14 86088939 86088939 C T FLRT2 Missense_Mutation p.P361S 0.45 tolerated(0.18) benign(0.017) TCGA-Z2-AA3S-06 15 42434766 42434766 G A PLA2G4F Silent p.F763F 0.53 TCGA-Z2-AA3S-06 15 67524205 67524205 C T AAGAB Missense_Mutation p.R161Q 0.42 deleterious(0.02) benign(0.438) TCGA-Z2-AA3S-06 15 73615940 73615940 G A HCN4 Silent p.L832L 0.42 TCGA-Z2-AA3S-06 15 73659945 73659945 G A HCN4 Nonsense_Mutation p.Q223* 0.42 TCGA-Z2-AA3S-06 15 73659946 73659946 G A HCN4 Silent p.L222L 0.43 TCGA-Z2-AA3S-06 16 11219836 11219836 C T CLEC16A Missense_Mutation p.A825V 0.46 tolerated(0.2) benign(0.008) TCGA-Z2-AA3S-06 16 11773314 11773314 C T TXNDC11 Missense_Mutation p.E872K 0.44 deleterious(0.05) possibly_damaging(0.474) TCGA-Z2-AA3S-06 16 20975048 20975048 C T DNAH3 Silent p.K3386K 0.38 TCGA-Z2-AA3S-06 16 22320765 22320765 C T POLR3E Nonsense_Mutation p.Q100* 0.38 TCGA-Z2-AA3S-06 16 29708687 29708687 C T QPRT Silent p.L283L 0.37 TCGA-Z2-AA3S-06 16 31437411 31437411 G A ITGAD Missense_Mutation p.D1150N 0.50 tolerated_low_confidence(0.4) benign(0.002) TCGA-Z2-AA3S-06 16 633567 633567 C T PIGQ Missense_Mutation p.P739L 0.20 tolerated_low_confidence(1) possibly_damaging(0.713) TCGA-Z2-AA3S-06 16 71318787 71318787 A G CMTR2 Missense_Mutation p.L346P 0.10 deleterious(0) probably_damaging(0.997) TCGA-Z2-AA3S-06 16 74485915 74485915 G A GLG1 3'UTR 0.80 TCGA-Z2-AA3S-06 16 78056553 78056553 C T CLEC3A Silent p.I19I 0.46 TCGA-Z2-AA3S-06 16 82101926 82101926 C T HSD17B2 Silent p.I139I 0.48 TCGA-Z2-AA3S-06 16 84456118 84456118 G A ATP2C2 Silent p.G249G 0.82 TCGA-Z2-AA3S-06 17 10297610 10297610 C T MYH8 Missense_Mutation p.E1708K 0.44 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 17 16593743 16593743 G A CCDC144A Missense_Mutation p.G10E 0.24 deleterious_low_confidence(0) benign(0.393) TCGA-Z2-AA3S-06 17 29161311 29161311 C T ATAD5 Missense_Mutation p.P71L 0.31 tolerated(0.25) benign(0.025) TCGA-Z2-AA3S-06 17 33679994 33679994 C T SLFN11 Missense_Mutation p.G696E 0.51 deleterious(0) probably_damaging(0.976) TCGA-Z2-AA3S-06 17 38562857 38562857 A G TOP2A Missense_Mutation p.W608R 0.49 deleterious(0) probably_damaging(0.977) TCGA-Z2-AA3S-06 17 38933870 38933870 C T KRT27 Missense_Mutation p.E363K 0.06 deleterious(0.01) possibly_damaging(0.742) TCGA-Z2-AA3S-06 17 39767167 39767167 A C KRT16 Missense_Mutation p.V333G 0.44 deleterious(0) probably_damaging(0.981) TCGA-Z2-AA3S-06 17 41607279 41607279 C A ETV4 Missense_Mutation p.V310F 0.40 deleterious(0) probably_damaging(0.946) TCGA-Z2-AA3S-06 17 41955198 41955198 C T MPP2 Missense_Mutation p.V546M 0.38 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 17 42818820 42818820 G A DBF4B Missense_Mutation p.R277K 0.29 tolerated(0.21) benign(0.044) TCGA-Z2-AA3S-06 17 44374719 44374719 C T LRRC37A Silent p.T740T 0.12 TCGA-Z2-AA3S-06 17 45199910 45199910 C T CDC27 Missense_Mutation p.M770I 0.45 tolerated(0.43) possibly_damaging(0.805) TCGA-Z2-AA3S-06 17 45913839 45913839 G A LRRC46 Missense_Mutation p.R198Q 0.42 tolerated(0.17) benign(0.037) TCGA-Z2-AA3S-06 17 46105844 46105844 C T COPZ2 Silent p.V191V 0.50 TCGA-Z2-AA3S-06 17 47122408 47122408 C T IGF2BP1 Missense_Mutation p.P459L 0.45 deleterious(0) possibly_damaging(0.661) TCGA-Z2-AA3S-06 17 47246131 47246131 G A B4GALNT2 Missense_Mutation p.G455E 0.33 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 17 56540471 56540471 G A HSF5 Missense_Mutation p.S405F 0.58 deleterious(0.05) benign(0.004) TCGA-Z2-AA3S-06 18 22806149 22806149 T C ZNF521 Missense_Mutation p.N578S 0.37 tolerated(0.29) benign(0.297) TCGA-Z2-AA3S-06 18 47566652 47566652 G A MYO5B Silent p.N57N 0.41 TCGA-Z2-AA3S-06 18 60527795 60527795 C T PHLPP1 Missense_Mutation p.P676L 0.33 tolerated(0.06) benign(0.01) TCGA-Z2-AA3S-06 18 641489 641489 C T CLUL1 Missense_Mutation p.S386F 0.33 deleterious(0) possibly_damaging(0.908) TCGA-Z2-AA3S-06 18 70502410 70502410 C T NETO1 Intron 0.64 TCGA-Z2-AA3S-06 18 76753506 76753506 C T SALL3 Silent p.P505P 0.29 TCGA-Z2-AA3S-06 19 11565684 11565684 G A ELAVL3 Missense_Mutation p.S254L 0.27 tolerated(0.26) benign(0.001) TCGA-Z2-AA3S-06 19 17452309 17452309 C T GTPBP3 Missense_Mutation p.P458S 0.44 tolerated(0.73) benign(0.009) TCGA-Z2-AA3S-06 19 17571430 17571430 C T NXNL1 Silent p.T83T 0.57 TCGA-Z2-AA3S-06 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.56 tolerated(0.44) benign(0.023) TCGA-Z2-AA3S-06 19 30935764 30935764 C T ZNF536 Missense_Mutation p.S432F 0.36 deleterious(0.01) possibly_damaging(0.828) TCGA-Z2-AA3S-06 19 31768946 31768946 G A TSHZ3 Missense_Mutation p.P585S 0.48 tolerated(0.89) possibly_damaging(0.48) TCGA-Z2-AA3S-06 19 3293503 3293503 C T CELF5 Intron 0.63 TCGA-Z2-AA3S-06 19 33392194 33392194 T G CEP89 Missense_Mutation p.K564Q 0.47 tolerated(0.11) benign(0.067) TCGA-Z2-AA3S-06 19 35232490 35232490 G A ZNF181 Missense_Mutation p.E402K 0.47 tolerated(0.06) benign(0.004) TCGA-Z2-AA3S-06 19 37677213 37677213 G A ZNF585B Missense_Mutation p.S409L 0.49 deleterious(0.04) benign(0.382) TCGA-Z2-AA3S-06 19 40993601 40993601 C T SPTBN4 Intron 0.33 TCGA-Z2-AA3S-06 19 42492213 42492213 C T ATP1A3 Missense_Mutation p.E91K 0.50 tolerated(0.08) probably_damaging(0.995) TCGA-Z2-AA3S-06 19 42848701 42848701 T A MEGF8 Missense_Mutation p.W633R 0.33 deleterious(0) probably_damaging(0.933) TCGA-Z2-AA3S-06 19 43529189 43529189 C T PSG11 Nonsense_Mutation p.W28* 0.45 TCGA-Z2-AA3S-06 19 51410312 51410312 C T KLK4 Missense_Mutation p.G215R 0.49 tolerated(0.09) benign(0.069) TCGA-Z2-AA3S-06 19 52869134 52869134 C T ZNF610 Missense_Mutation p.S168F 0.41 tolerated(0.72) benign(0.001) TCGA-Z2-AA3S-06 19 53015335 53015335 C T ZNF578 Silent p.Y567Y 0.45 TCGA-Z2-AA3S-06 19 58152900 58152900 C T ZNF211 Missense_Mutation p.S414F 0.44 tolerated(0.71) benign(0.012) TCGA-Z2-AA3S-06 19 5843968 5843968 C T FUT3 Missense_Mutation p.D295N 0.20 deleterious(0.04) possibly_damaging(0.829) TCGA-Z2-AA3S-06 19 6468965 6468965 C T DENND1C Splice_Site p.X470_splice 0.71 TCGA-Z2-AA3S-06 19 9056445 9056445 G A MUC16 Missense_Mutation p.S10334F 0.33 benign(0.293) TCGA-Z2-AA3S-06 19 9324834 9324834 C T OR7D4 Missense_Mutation p.G227E 0.28 deleterious(0.04) benign(0.027) TCGA-Z2-AA3S-06 1 101705649 101705649 A C S1PR1 Missense_Mutation p.E370A 0.42 tolerated(0.22) benign(0.001) TCGA-Z2-AA3S-06 1 10364298 10364298 C T KIF1B Intron 0.37 TCGA-Z2-AA3S-06 1 115277068 115277068 T A CSDE1 Missense_Mutation p.M239L 0.49 tolerated(0.31) benign(0.016) TCGA-Z2-AA3S-06 1 11589935 11589935 C T PTCHD2 Silent p.T1007T 0.46 TCGA-Z2-AA3S-06 1 12820721 12820721 G A C1orf158 Missense_Mutation p.G141E 0.39 deleterious(0.03) possibly_damaging(0.81) TCGA-Z2-AA3S-06 1 152190688 152190688 G T HRNR Silent p.P1139P 0.50 TCGA-Z2-AA3S-06 1 152286841 152286841 C T FLG Missense_Mutation p.G174E 0.34 benign(0.066) TCGA-Z2-AA3S-06 1 155896480 155896480 G A KIAA0907 Missense_Mutation p.P223L 0.33 tolerated(0.38) benign(0.3) TCGA-Z2-AA3S-06 1 156047015 156047015 G A MEX3A Silent p.L305L 0.40 TCGA-Z2-AA3S-06 1 157660266 157660266 C T FCRL3 Missense_Mutation p.G490E 0.29 deleterious(0.04) possibly_damaging(0.489) TCGA-Z2-AA3S-06 1 158368546 158368546 G A OR10T2 Silent p.A237A 0.37 TCGA-Z2-AA3S-06 1 16103719 16103719 G A FBLIM1 3'Flank 0.47 TCGA-Z2-AA3S-06 1 162324985 162324985 C T NOS1AP Missense_Mutation p.L202F 0.35 tolerated(0.12) benign(0.033) TCGA-Z2-AA3S-06 1 17313618 17313618 G A ATP13A2 Silent p.L1002L 0.39 TCGA-Z2-AA3S-06 1 175052934 175052934 C T TNN Missense_Mutation p.S366F 0.42 deleterious(0) probably_damaging(0.965) TCGA-Z2-AA3S-06 1 175066687 175066687 G A TNN Missense_Mutation p.E575K 0.18 deleterious(0) possibly_damaging(0.595) TCGA-Z2-AA3S-06 1 180905437 180905437 A G KIAA1614 Missense_Mutation p.T798A 0.39 tolerated(0.43) benign(0.015) TCGA-Z2-AA3S-06 1 183155525 183155525 C T LAMC2 Missense_Mutation p.S13L 0.47 tolerated(0.59) benign(0.001) TCGA-Z2-AA3S-06 1 196436901 196436901 A G KCNT2 Silent p.L159L 0.45 TCGA-Z2-AA3S-06 1 201039420 201039420 G A CACNA1S Silent p.F780F 0.41 TCGA-Z2-AA3S-06 1 208213047 208213047 G A PLXNA2 Silent p.P1473P 0.37 TCGA-Z2-AA3S-06 1 209806087 209806087 G A LAMB3 Silent p.F221F 0.35 TCGA-Z2-AA3S-06 1 21268218 21268218 G A EIF4G3 Missense_Mutation p.P427S 0.42 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-Z2-AA3S-06 1 228456506 228456507 - GT OBSCN Frame_Shift_Ins 0.17 TCGA-Z2-AA3S-06 1 236433266 236433266 C T ERO1LB Missense_Mutation p.C44Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 1 24022867 24022867 C T RPL11 3'UTR 0.26 TCGA-Z2-AA3S-06 1 240656440 240656440 C T GREM2 Silent p.K112K 0.55 TCGA-Z2-AA3S-06 1 24400750 24400750 G A MYOM3 Silent p.V956V 0.37 TCGA-Z2-AA3S-06 1 28833934 28833934 G A SNORA73B 5'Flank 0.37 TCGA-Z2-AA3S-06 1 28833935 28833935 G A SNORA73B 5'Flank 0.38 TCGA-Z2-AA3S-06 1 32739969 32739969 G A LCK Nonsense_Mutation p.W13* 0.38 TCGA-Z2-AA3S-06 1 32798713 32798713 T C HDAC1 3'UTR 0.44 TCGA-Z2-AA3S-06 1 3301784 3301784 C T PRDM16 Silent p.L169L 0.47 TCGA-Z2-AA3S-06 1 36564719 36564719 C T COL8A2 Missense_Mutation p.G188E 0.40 deleterious(0) unknown(0) TCGA-Z2-AA3S-06 1 41092254 41092254 C T RIMS3 Missense_Mutation p.G288R 0.67 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-Z2-AA3S-06 1 46751151 46751151 G A LRRC41 Missense_Mutation p.R460C 0.30 deleterious(0) possibly_damaging(0.835) TCGA-Z2-AA3S-06 1 47650725 47650725 C T PDZK1IP1 Missense_Mutation p.G74E 0.33 tolerated(0.3) benign(0.284) TCGA-Z2-AA3S-06 1 57258127 57258127 G A C1orf168 Missense_Mutation p.S120L 0.51 tolerated(0.09) benign(0.188) TCGA-Z2-AA3S-06 1 57425773 57425773 C T C8B Missense_Mutation p.D57N 0.54 tolerated(0.58) benign(0.005) TCGA-Z2-AA3S-06 1 57611058 57611058 C T DAB1 Missense_Mutation p.E38K 0.39 deleterious(0) benign(0.024) TCGA-Z2-AA3S-06 1 75072535 75072535 C T C1orf173 Silent p.R413R 0.36 TCGA-Z2-AA3S-06 1 93303087 93303087 G T RPL5 Missense_Mutation p.G201V 0.49 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 20 20123560 20123560 C G C20orf26 Missense_Mutation p.P307A 0.54 tolerated(0.42) benign(0.008) TCGA-Z2-AA3S-06 20 3673585 3673585 C T SIGLEC1 Silent p.R1234R 0.50 TCGA-Z2-AA3S-06 20 44879721 44879721 C T CDH22 Silent p.V71V 0.38 TCGA-Z2-AA3S-06 20 45133332 45133332 T C ZNF334 Silent p.E23E 0.51 TCGA-Z2-AA3S-06 20 55803298 55803298 C T BMP7 Missense_Mutation p.E200K 0.40 deleterious(0.02) benign(0.199) TCGA-Z2-AA3S-06 20 57767989 57767989 C T ZNF831 Missense_Mutation p.P639S 0.46 tolerated(0.28) benign(0.024) TCGA-Z2-AA3S-06 20 57767990 57767990 C T ZNF831 Missense_Mutation p.P639L 0.46 tolerated(0.43) benign(0.024) TCGA-Z2-AA3S-06 20 58491624 58491624 T A SYCP2 Nonsense_Mutation p.K144* 0.49 TCGA-Z2-AA3S-06 20 5904278 5904278 G A CHGB Silent p.R496R 0.35 TCGA-Z2-AA3S-06 21 11039336 11039336 T C BAGE2 RNA 0.09 TCGA-Z2-AA3S-06 21 27945286 27945286 C G CYYR1 5'UTR 0.46 TCGA-Z2-AA3S-06 21 39672145 39672145 G A KCNJ15 Missense_Mutation p.G321E 0.34 deleterious(0) probably_damaging(0.981) TCGA-Z2-AA3S-06 21 39795419 39795419 C T ERG Missense_Mutation p.G108R 0.54 tolerated(0.2) benign(0.036) TCGA-Z2-AA3S-06 21 47402624 47402624 C T COL6A1 Silent p.L58L 0.35 TCGA-Z2-AA3S-06 22 20077686 20077686 C T DGCR8 Missense_Mutation p.P404L 0.43 tolerated(0.18) benign(0) TCGA-Z2-AA3S-06 22 25289505 25289505 C T SGSM1 Silent p.A681A 0.31 TCGA-Z2-AA3S-06 22 29445729 29445729 C T ZNRF3 Silent p.H520H 0.23 TCGA-Z2-AA3S-06 22 31302132 31302132 C T OSBP2 Intron 0.56 TCGA-Z2-AA3S-06 22 33264984 33264984 G A SYN3 Missense_Mutation p.S197F 0.44 deleterious(0) unknown(0) TCGA-Z2-AA3S-06 22 38822649 38822649 G A KCNJ4 3'UTR 0.44 TCGA-Z2-AA3S-06 22 40814456 40814456 G A MKL1 Silent p.S662S 0.57 TCGA-Z2-AA3S-06 2 113309567 113309567 C T POLR1B Silent p.F326F 0.39 TCGA-Z2-AA3S-06 2 166201080 166201080 T C SCN2A Silent p.L860L 0.43 TCGA-Z2-AA3S-06 2 166904163 166904163 C T SCN1A Missense_Mutation p.D382N 0.42 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 2 175614836 175614836 G A CHRNA1 Silent p.I305I 0.56 TCGA-Z2-AA3S-06 2 179981491 179981491 C T SESTD1 Silent p.L517L 0.84 TCGA-Z2-AA3S-06 2 183104895 183104895 C T PDE1A Missense_Mutation p.E114K 0.77 deleterious(0) probably_damaging(0.961) TCGA-Z2-AA3S-06 2 1893036 1893036 C T MYT1L Missense_Mutation p.E831K 0.42 deleterious(0.05) benign(0.3) TCGA-Z2-AA3S-06 2 241700681 241700681 C T KIF1A Missense_Mutation p.E744K 0.82 deleterious(0) possibly_damaging(0.575) TCGA-Z2-AA3S-06 2 241700682 241700682 C T KIF1A Silent p.K743K 0.81 TCGA-Z2-AA3S-06 2 96262100 96262100 G A TRIM43 Missense_Mutation p.D220N 0.50 tolerated(0.45) benign(0.001) TCGA-Z2-AA3S-06 2 96852497 96852497 A G STARD7 Missense_Mutation p.C362R 0.14 tolerated_low_confidence(0.61) benign(0) TCGA-Z2-AA3S-06 3 108818274 108818274 C T MORC1 Silent p.T118T 0.78 TCGA-Z2-AA3S-06 3 115395156 115395156 C T GAP43 Silent p.S145S 0.64 TCGA-Z2-AA3S-06 3 12183415 12183415 C T SYN2 RNA 0.77 TCGA-Z2-AA3S-06 3 122288130 122288130 G A DTX3L Silent p.E398E 0.76 TCGA-Z2-AA3S-06 3 12613650 12613650 C T MKRN2 Silent p.P140P 0.82 TCGA-Z2-AA3S-06 3 12623650 12623650 G T MKRN2 Missense_Mutation p.E383D 0.85 tolerated(0.13) possibly_damaging(0.72) TCGA-Z2-AA3S-06 3 17056268 17056268 G A PLCL2 Silent p.L835L 0.75 TCGA-Z2-AA3S-06 3 172224374 172224374 C T TNFSF10 Missense_Mutation p.E252K 0.84 tolerated(0.27) benign(0.042) TCGA-Z2-AA3S-06 3 186507771 186507771 G T RFC4 Missense_Mutation p.S360Y 0.50 deleterious(0.01) benign(0.077) TCGA-Z2-AA3S-06 3 196386923 196386923 C T NRROS Silent p.L137L 0.89 TCGA-Z2-AA3S-06 3 38592939 38592939 C T SCN5A Missense_Mutation p.G1642R 0.28 deleterious(0.02) probably_damaging(1) TCGA-Z2-AA3S-06 3 38592940 38592940 C T SCN5A Silent p.K1641K 0.29 TCGA-Z2-AA3S-06 3 38793874 38793874 C T SCN10A Missense_Mutation p.E531K 0.28 tolerated(0.06) benign(0.01) TCGA-Z2-AA3S-06 3 43121990 43121990 G A POMGNT2 Nonsense_Mutation p.Q312* 0.55 TCGA-Z2-AA3S-06 3 43344878 43344878 C T SNRK Silent p.F61F 0.75 TCGA-Z2-AA3S-06 3 49742114 49742114 C T RNF123 Silent p.I628I 0.75 TCGA-Z2-AA3S-06 3 50229233 50229233 G T GNAT1 Missense_Mutation p.K25N 1.00 tolerated(0.4) benign(0.324) TCGA-Z2-AA3S-06 3 50330018 50330018 C T IFRD2 5'Flank 0.76 TCGA-Z2-AA3S-06 3 77623790 77623790 G A ROBO2 Silent p.K720K 0.68 TCGA-Z2-AA3S-06 4 110663746 110663746 C T CFI Missense_Mutation p.E479K 0.94 tolerated(0.98) benign(0.002) TCGA-Z2-AA3S-06 4 142153743 142153743 C T ZNF330 Missense_Mutation p.P212L 0.96 deleterious(0) probably_damaging(0.959) TCGA-Z2-AA3S-06 4 151719259 151719259 C T LRBA Missense_Mutation p.E1852K 0.90 deleterious(0) probably_damaging(0.991) TCGA-Z2-AA3S-06 4 170994414 170994414 G A AADAT Missense_Mutation p.S176F 0.46 deleterious(0.01) probably_damaging(0.927) TCGA-Z2-AA3S-06 4 1808338 1808338 C T FGFR3 Missense_Mutation p.P701L 0.55 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 4 187084777 187084777 G A FAM149A Missense_Mutation p.G345R 0.60 deleterious(0.02) probably_damaging(0.977) TCGA-Z2-AA3S-06 4 187524134 187524134 C T FAT1 Missense_Mutation p.G3802E 0.46 possibly_damaging(0.77) TCGA-Z2-AA3S-06 4 46043196 46043196 C T GABRG1 Missense_Mutation p.G403R 0.43 tolerated(0.4) possibly_damaging(0.881) TCGA-Z2-AA3S-06 4 55972026 55972026 C T KDR Missense_Mutation p.E540K 0.47 deleterious(0.01) possibly_damaging(0.899) TCGA-Z2-AA3S-06 4 74367576 74367576 C T AFM Silent p.F573F 0.52 TCGA-Z2-AA3S-06 4 7684499 7684499 A C SORCS2 Silent p.A457A 0.36 TCGA-Z2-AA3S-06 4 9784432 9784432 C T DRD5 Missense_Mutation p.S260F 0.38 deleterious(0) probably_damaging(0.961) TCGA-Z2-AA3S-06 5 118483020 118483020 C T DMXL1 Silent p.I922I 0.41 TCGA-Z2-AA3S-06 5 132160981 132160981 G A SHROOM1 Silent p.S284S 0.56 TCGA-Z2-AA3S-06 5 13719111 13719111 G A DNAH5 Missense_Mutation p.R4127C 0.55 possibly_damaging(0.898) TCGA-Z2-AA3S-06 5 13776782 13776782 C T DNAH5 Missense_Mutation p.E3047K 0.45 possibly_damaging(0.621) TCGA-Z2-AA3S-06 5 140558754 140558754 G A PCDHB8 Missense_Mutation p.G380E 0.23 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-Z2-AA3S-06 5 140574249 140574249 C T PCDHB10 Silent p.L708L 0.44 TCGA-Z2-AA3S-06 5 147040544 147040544 G A JAKMIP2 Silent p.I198I 0.44 TCGA-Z2-AA3S-06 5 149501461 149501461 C T PDGFRB Missense_Mutation p.D776N 0.41 deleterious(0.01) possibly_damaging(0.842) TCGA-Z2-AA3S-06 5 156590035 156590035 C G FAM71B Missense_Mutation p.S414T 0.50 tolerated(0.06) possibly_damaging(0.891) TCGA-Z2-AA3S-06 5 156816367 156816367 C T CYFIP2 Silent p.F1100F 0.40 TCGA-Z2-AA3S-06 5 160113175 160113175 G A ATP10B Silent p.F127F 0.45 TCGA-Z2-AA3S-06 5 176732934 176732934 C T PRELID1 Silent p.R127R 0.32 TCGA-Z2-AA3S-06 5 178419048 178419048 G T GRM6 Missense_Mutation p.L181I 0.19 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 5 23510103 23510103 G A PRDM9 Missense_Mutation p.D90N 0.58 deleterious_low_confidence(0) benign(0.04) TCGA-Z2-AA3S-06 5 39134989 39134989 C T FYB Missense_Mutation p.G558E 0.21 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 5 40853205 40853205 G A CARD6 Missense_Mutation p.E591K 0.49 tolerated(0.11) benign(0.11) TCGA-Z2-AA3S-06 5 73163842 73163842 A G ARHGEF28 Missense_Mutation p.E765G 0.27 deleterious(0.02) benign(0.015) TCGA-Z2-AA3S-06 5 80497235 80497235 A G RASGRF2 Silent p.E960E 0.48 TCGA-Z2-AA3S-06 5 89910701 89910701 C T GPR98 Silent p.I24I 0.55 TCGA-Z2-AA3S-06 5 89943410 89943410 A G GPR98 Missense_Mutation p.T1040A 0.37 benign(0.045) TCGA-Z2-AA3S-06 5 90098666 90098666 C T GPR98 Silent p.V4876V 0.33 TCGA-Z2-AA3S-06 5 9042978 9042978 G A SEMA5A 3'UTR 0.44 TCGA-Z2-AA3S-06 5 96364207 96364207 G C LNPEP Missense_Mutation p.K1016N 0.34 tolerated(0.16) benign(0.003) TCGA-Z2-AA3S-06 6 111896845 111896845 C G TRAF3IP2 Splice_Site p.X401_splice 0.47 TCGA-Z2-AA3S-06 6 112389466 112389466 G A WISP3 Nonsense_Mutation p.W234* 0.78 TCGA-Z2-AA3S-06 6 159401864 159401864 G C RSPH3 Silent p.L409L 0.42 TCGA-Z2-AA3S-06 6 160328123 160328123 G A MAS1 Missense_Mutation p.G46R 0.47 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 6 160328764 160328764 G A MAS1 Silent p.G259G 0.38 TCGA-Z2-AA3S-06 6 161006178 161006178 G A LPA Nonsense_Mutation p.R1397* 0.38 TCGA-Z2-AA3S-06 6 170112582 170112582 G C PHF10 Missense_Mutation p.P286R 0.52 deleterious(0) probably_damaging(0.985) TCGA-Z2-AA3S-06 6 26027467 26027467 C T HIST1H4B Missense_Mutation p.G5D 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-Z2-AA3S-06 6 26091745 26091745 T C HFE Missense_Mutation p.Y182H 0.35 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3S-06 6 26104205 26104205 C T HIST1H4C Silent p.G10G 0.38 TCGA-Z2-AA3S-06 6 29395458 29395458 G A OR11A1 5'UTR 0.70 TCGA-Z2-AA3S-06 6 31803104 31803105 - C C6orf48 Intron 0.26 TCGA-Z2-AA3S-06 6 36978748 36978748 G A FGD2 Splice_Site p.X101_splice 0.40 TCGA-Z2-AA3S-06 6 41254439 41254439 A T TREM1 5'UTR 0.50 TCGA-Z2-AA3S-06 6 43323070 43323070 G A ZNF318 Nonsense_Mutation p.R668* 0.47 TCGA-Z2-AA3S-06 6 44988335 44988335 C T SUPT3H Missense_Mutation p.G85E 0.48 deleterious(0.04) probably_damaging(0.994) TCGA-Z2-AA3S-06 6 49754106 49754106 G A PGK2 Silent p.I265I 0.48 TCGA-Z2-AA3S-06 6 70669916 70669916 G A COL19A1 Missense_Mutation p.G322E 0.40 deleterious(0) unknown(0) TCGA-Z2-AA3S-06 6 84375160 84375160 C T SNAP91 Missense_Mutation p.E91K 0.31 deleterious(0) unknown(0) TCGA-Z2-AA3S-06 6 96651051 96651051 G A FUT9 Missense_Mutation p.G7E 0.43 tolerated(0.67) possibly_damaging(0.755) TCGA-Z2-AA3S-06 7 116849985 116849985 G T ST7 Nonsense_Mutation p.E467* 0.27 TCGA-Z2-AA3S-06 7 138596019 138596019 G A KIAA1549 Silent p.F1006F 0.25 TCGA-Z2-AA3S-06 7 141803116 141803116 A C MGAM Silent p.T1791T 0.22 TCGA-Z2-AA3S-06 7 142045295 142045295 G A TRBV4-2 5'UTR 0.24 TCGA-Z2-AA3S-06 7 146997374 146997374 T A CNTNAP2 Missense_Mutation p.F497Y 0.19 tolerated(1) benign(0.004) TCGA-Z2-AA3S-06 7 150093859 150093859 G A ZNF775 Missense_Mutation p.S97N 0.40 tolerated(0.28) benign(0.002) TCGA-Z2-AA3S-06 7 150417473 150417473 G A GIMAP1 Silent p.Q127Q 0.38 TCGA-Z2-AA3S-06 7 151970842 151970842 G A KMT2C Silent p.F320F 0.04 TCGA-Z2-AA3S-06 7 2962328 2962328 G A CARD11 Missense_Mutation p.H737Y 0.94 tolerated(0.4) benign(0.005) TCGA-Z2-AA3S-06 7 2983977 2983977 C T CARD11 Missense_Mutation p.E185K 0.37 deleterious(0) possibly_damaging(0.687) TCGA-Z2-AA3S-06 7 2983978 2983978 C T CARD11 Silent p.K184K 0.38 TCGA-Z2-AA3S-06 7 42949938 42949938 C A C7orf25 Missense_Mutation p.V246L 0.39 deleterious(0.01) probably_damaging(0.957) TCGA-Z2-AA3S-06 7 48086201 48086201 G A C7orf57 Silent p.K165K 0.44 TCGA-Z2-AA3S-06 7 48494782 48494782 C T ABCA13 Silent p.A4238A 0.90 TCGA-Z2-AA3S-06 7 76058900 76058900 C T ZP3 Silent p.S127S 0.87 TCGA-Z2-AA3S-06 7 76255409 76255409 C T POMZP3 5'UTR 0.43 TCGA-Z2-AA3S-06 7 86493744 86493744 G A GRM3 3'UTR 0.45 TCGA-Z2-AA3S-06 8 101076204 101076204 C T RGS22 Silent p.L264L 0.36 TCGA-Z2-AA3S-06 8 118184785 118184785 G A SLC30A8 Silent p.R325R 0.46 TCGA-Z2-AA3S-06 8 144998535 144998535 G A PLEC Silent p.I1991I 0.46 TCGA-Z2-AA3S-06 8 38097840 38097840 G C DDHD2 Missense_Mutation p.G224R 0.85 deleterious(0) probably_damaging(1) TCGA-Z2-AA3S-06 8 61712995 61712995 C T CHD7 Silent p.L763L 0.45 TCGA-Z2-AA3S-06 9 117838804 117838804 T A TNC Missense_Mutation p.I909F 0.78 deleterious(0) possibly_damaging(0.673) TCGA-Z2-AA3S-06 9 125377694 125377694 C T OR1Q1 Silent p.L226L 0.77 TCGA-Z2-AA3S-06 9 135690096 135690096 A G AK8 Missense_Mutation p.L303P 0.50 deleterious(0) probably_damaging(0.995) TCGA-Z2-AA3S-06 9 32631964 32631964 C T TAF1L Missense_Mutation p.R1205Q 0.84 deleterious(0.01) benign(0.03) TCGA-Z2-AA3S-06 X 11161891 11161891 G A ARHGAP6 Intron 0.85 TCGA-Z2-AA3S-06 X 154293947 154293947 C T MTCP1 Missense_Mutation p.E75K 0.92 tolerated(0.93) benign(0.031) TCGA-Z2-AA3S-06 X 53438772 53438772 C T SMC1A Missense_Mutation p.R398Q 0.77 tolerated(0.34) probably_damaging(0.998) TCGA-Z2-AA3S-06 X 6069339 6069339 C T NLGN4X Missense_Mutation p.G57S 0.93 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3S-06 X 65392393 65392393 C T HEPH Missense_Mutation p.P176S 0.89 tolerated(0.1) probably_damaging(0.999) TCGA-Z2-AA3S-06 X 73961314 73961314 G A KIAA2022 Silent p.F1026F 0.78 TCGA-Z2-AA3S-06 X 84502510 84502510 G A ZNF711 Intron 0.87 TCGA-Z2-AA3V-06 10 104593865 104593865 T C CYP17A1 Silent p.K227K 0.09 TCGA-Z2-AA3V-06 10 115526376 115526376 T C PLEKHS1 Silent p.S35S 0.21 TCGA-Z2-AA3V-06 10 135347260 135347260 G A CYP2E1 Missense_Mutation p.E276K 0.23 deleterious(0.02) benign(0.063) TCGA-Z2-AA3V-06 10 18276481 18276481 C T SLC39A12 Silent p.F390F 0.27 TCGA-Z2-AA3V-06 10 6008287 6008287 G A IL15RA Missense_Mutation p.P35L 0.16 deleterious(0.04) benign(0.124) TCGA-Z2-AA3V-06 10 6008288 6008288 G A IL15RA Missense_Mutation p.P35S 0.16 tolerated(0.31) benign(0.124) TCGA-Z2-AA3V-06 10 63520680 63520680 G A C10orf107 Missense_Mutation p.M157I 0.34 tolerated(0.46) benign(0.006) TCGA-Z2-AA3V-06 10 72518021 72518021 C T ADAMTS14 Missense_Mutation p.P1056L 0.29 deleterious(0.02) possibly_damaging(0.721) TCGA-Z2-AA3V-06 10 72518022 72518022 C T ADAMTS14 Silent p.P1056P 0.29 TCGA-Z2-AA3V-06 11 1097315 1097315 C T MUC2 Missense_Mutation p.S2244F 0.28 unknown(0) TCGA-Z2-AA3V-06 11 110454435 110454435 T C ARHGAP20 Missense_Mutation p.N481S 0.30 deleterious(0.02) possibly_damaging(0.869) TCGA-Z2-AA3V-06 11 113934901 113934901 G A ZBTB16 Silent p.R293R 0.17 TCGA-Z2-AA3V-06 11 1264325 1264325 C T MUC5B Missense_Mutation p.T2072M 0.28 unknown(0) TCGA-Z2-AA3V-06 11 1482237 1482237 G T BRSK2 3'UTR 0.13 TCGA-Z2-AA3V-06 11 18955382 18955382 C T MRGPRX1 Missense_Mutation p.G317E 0.28 tolerated(0.48) benign(0.011) TCGA-Z2-AA3V-06 11 19077934 19077934 G A MRGPRX2 Missense_Mutation p.P6S 0.24 tolerated(0.55) benign(0.009) TCGA-Z2-AA3V-06 11 20628566 20628566 C T SLC6A5 Silent p.I231I 0.14 TCGA-Z2-AA3V-06 11 2415365 2415365 C T CD81 Silent p.F74F 0.17 TCGA-Z2-AA3V-06 11 26681952 26681952 G A ANO3 Silent p.R969R 0.26 TCGA-Z2-AA3V-06 11 35287304 35287304 C T SLC1A2 Missense_Mutation p.D475N 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-Z2-AA3V-06 11 35287305 35287305 C T SLC1A2 Silent p.L474L 0.40 TCGA-Z2-AA3V-06 11 35336640 35336640 G A SLC1A2 Silent p.F80F 0.26 TCGA-Z2-AA3V-06 11 40137122 40137122 C T LRRC4C Missense_Mutation p.G241S 0.28 tolerated(0.1) possibly_damaging(0.871) TCGA-Z2-AA3V-06 11 4566520 4566520 G A OR52M1 Missense_Mutation p.G34S 0.17 tolerated(0.11) benign(0.011) TCGA-Z2-AA3V-06 11 4566521 4566521 G A OR52M1 Missense_Mutation p.G34D 0.18 deleterious(0) benign(0.342) TCGA-Z2-AA3V-06 11 4608721 4608721 C T OR52I2 Missense_Mutation p.L227F 0.15 tolerated(0.06) possibly_damaging(0.861) TCGA-Z2-AA3V-06 11 4944897 4944897 G A OR51G1 Missense_Mutation p.R225C 0.17 deleterious(0.02) benign(0.035) TCGA-Z2-AA3V-06 11 5153530 5153530 C T OR52A5 Missense_Mutation p.G115S 0.09 deleterious(0.01) probably_damaging(0.97) TCGA-Z2-AA3V-06 11 56057668 56057668 G C OR8H1 Missense_Mutation p.L291V 0.06 deleterious(0.01) benign(0.32) TCGA-Z2-AA3V-06 11 56057728 56057728 G C OR8H1 Missense_Mutation p.Q271E 0.05 deleterious(0.01) benign(0.327) TCGA-Z2-AA3V-06 11 56058192 56058192 G A OR8H1 Missense_Mutation p.S116L 0.05 tolerated(0.15) possibly_damaging(0.839) TCGA-Z2-AA3V-06 11 56058276 56058276 G A OR8H1 Missense_Mutation p.S88F 0.05 deleterious(0.01) benign(0.016) TCGA-Z2-AA3V-06 11 56058318 56058318 G A OR8H1 Missense_Mutation p.S74L 0.05 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 11 56058392 56058392 G A OR8H1 Silent p.I49I 0.05 TCGA-Z2-AA3V-06 11 56409524 56409524 G A OR5AP2 Missense_Mutation p.A131V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-AA3V-06 11 5809770 5809770 C T OR52N1 Missense_Mutation p.E93K 0.20 tolerated(0.07) benign(0.012) TCGA-Z2-AA3V-06 11 59620434 59620434 A T TCN1 3'UTR 0.27 TCGA-Z2-AA3V-06 11 60105337 60105337 G A MS4A6E Missense_Mutation p.D91N 0.28 tolerated(0.76) benign(0.002) TCGA-Z2-AA3V-06 11 68157517 68157517 C T LRP5 Silent p.I527I 0.12 TCGA-Z2-AA3V-06 11 72005467 72005467 A T CLPB Missense_Mutation p.F558I 0.25 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 11 73879483 73879483 G A C2CD3 Silent p.P77P 0.17 TCGA-Z2-AA3V-06 11 73879484 73879484 G A C2CD3 Missense_Mutation p.P77L 0.17 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 11 74716623 74716623 C T NEU3 Missense_Mutation p.R158C 0.21 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 11 76063414 76063414 A T PRKRIR Missense_Mutation p.F260L 0.25 deleterious(0.03) possibly_damaging(0.651) TCGA-Z2-AA3V-06 11 88300331 88300331 A G GRM5 Silent p.S840S 0.26 TCGA-Z2-AA3V-06 11 88300332 88300332 G A GRM5 Missense_Mutation p.S840F 0.25 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3V-06 12 10206897 10206897 C T CLEC9A Missense_Mutation p.S40L 0.15 tolerated(0.22) benign(0.01) TCGA-Z2-AA3V-06 12 103248989 103248989 G A PAH Missense_Mutation p.P211S 0.23 deleterious(0.04) probably_damaging(0.98) TCGA-Z2-AA3V-06 12 104390542 104390542 G A GLT8D2 Nonsense_Mutation p.Q191* 0.23 TCGA-Z2-AA3V-06 12 109017363 109017363 C T SELPLG Missense_Mutation p.A257T 0.13 tolerated(0.13) benign(0.036) TCGA-Z2-AA3V-06 12 109017364 109017364 C T SELPLG Silent p.E256E 0.13 TCGA-Z2-AA3V-06 12 113445545 113445545 C T OAS2 Silent p.P564P 0.19 TCGA-Z2-AA3V-06 12 119968742 119968742 C T CCDC60 Silent p.I475I 0.28 TCGA-Z2-AA3V-06 12 120653384 120653384 G A PXN Intron 0.20 TCGA-Z2-AA3V-06 12 120653385 120653385 G C PXN Intron 0.20 TCGA-Z2-AA3V-06 12 121097702 121097702 G A CABP1 Missense_Mutation p.E226K 0.26 deleterious(0.01) possibly_damaging(0.746) TCGA-Z2-AA3V-06 12 122862170 122862170 G A CLIP1 Silent p.P141P 0.25 TCGA-Z2-AA3V-06 12 124354956 124354956 G A DNAH10 Silent p.R2403R 0.12 TCGA-Z2-AA3V-06 12 126128661 126128661 G A TMEM132B Missense_Mutation p.E488K 0.19 deleterious(0) possibly_damaging(0.886) TCGA-Z2-AA3V-06 12 126138423 126138423 G A TMEM132B Missense_Mutation p.D802N 0.14 tolerated(0.12) benign(0.081) TCGA-Z2-AA3V-06 12 129822261 129822261 G A TMEM132D Missense_Mutation p.P406L 0.19 deleterious(0) benign(0.093) TCGA-Z2-AA3V-06 12 129822262 129822262 G A TMEM132D Missense_Mutation p.P406S 0.19 deleterious(0.01) possibly_damaging(0.84) TCGA-Z2-AA3V-06 12 132250766 132250766 G A SFSWAP Silent p.R685R 0.21 TCGA-Z2-AA3V-06 12 13906630 13906630 C T GRIN2B Missense_Mutation p.D211N 0.21 tolerated(0.1) probably_damaging(0.918) TCGA-Z2-AA3V-06 12 21331569 21331569 C T SLCO1B1 Missense_Mutation p.R181C 0.20 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 12 21926360 21926360 A T KCNJ8 Nonsense_Mutation p.L64* 0.26 TCGA-Z2-AA3V-06 12 22065976 22065976 G A ABCC9 Missense_Mutation p.R281W 0.21 deleterious(0.04) possibly_damaging(0.663) TCGA-Z2-AA3V-06 12 27066607 27066607 G A ASUN Missense_Mutation p.R530C 0.23 deleterious(0.03) possibly_damaging(0.528) TCGA-Z2-AA3V-06 12 38710565 38710565 C T ALG10B 5'UTR 0.40 TCGA-Z2-AA3V-06 12 41337838 41337838 A T CNTN1 Missense_Mutation p.T517S 0.18 tolerated(0.37) benign(0.065) TCGA-Z2-AA3V-06 12 42853849 42853849 C T PRICKLE1 Missense_Mutation p.G753E 0.22 deleterious(0.04) benign(0.008) TCGA-Z2-AA3V-06 12 44781892 44781892 C T TMEM117 Missense_Mutation p.H328Y 0.21 tolerated(1) benign(0.007) TCGA-Z2-AA3V-06 12 4920251 4920251 G A KCNA6 Silent p.R348R 0.30 TCGA-Z2-AA3V-06 12 51584241 51584241 G A POU6F1 Missense_Mutation p.S232F 0.24 deleterious(0) possibly_damaging(0.64) TCGA-Z2-AA3V-06 12 52992704 52992704 A T KRT72 Missense_Mutation p.L207M 0.22 tolerated(0.2) possibly_damaging(0.819) TCGA-Z2-AA3V-06 12 53647395 53647395 T C MFSD5 Missense_Mutation p.F366S 0.30 deleterious(0) probably_damaging(0.994) TCGA-Z2-AA3V-06 12 54756636 54756636 G T GPR84 Missense_Mutation p.P334T 0.24 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 12 57538882 57538882 C T LRP1 Silent p.N192N 0.23 TCGA-Z2-AA3V-06 12 7585237 7585237 C T CD163L1 Missense_Mutation p.D181N 0.29 tolerated(0.1) benign(0.378) TCGA-Z2-AA3V-06 12 79747371 79747371 G A SYT1 Silent p.L300L 0.25 TCGA-Z2-AA3V-06 12 81239603 81239603 G A LIN7A Missense_Mutation p.S130F 0.20 deleterious(0) probably_damaging(0.951) TCGA-Z2-AA3V-06 12 81503382 81503382 C T ACSS3 Missense_Mutation p.R119C 0.19 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 12 9360952 9360952 C T PZP 5'UTR 0.24 TCGA-Z2-AA3V-06 13 103718258 103718258 G A SLC10A2 Silent p.I114I 0.21 TCGA-Z2-AA3V-06 13 23914882 23914882 C T SACS Missense_Mutation p.E1045K 0.16 benign(0.022) TCGA-Z2-AA3V-06 13 25285784 25285784 C T ATP12A 3'UTR 0.33 TCGA-Z2-AA3V-06 13 28562719 28562719 C T URAD Missense_Mutation p.G19E 0.20 deleterious(0.03) possibly_damaging(0.767) TCGA-Z2-AA3V-06 13 29599114 29599114 C T MTUS2 Silent p.A103A 0.26 TCGA-Z2-AA3V-06 13 29600079 29600079 C T MTUS2 Missense_Mutation p.S425L 0.31 deleterious(0.05) benign(0.021) TCGA-Z2-AA3V-06 13 42773767 42773767 C T DGKH Missense_Mutation p.S784L 0.16 deleterious(0) probably_damaging(0.995) TCGA-Z2-AA3V-06 13 73649900 73649900 C T KLF5 Missense_Mutation p.S417L 0.14 deleterious(0) probably_damaging(0.921) TCGA-Z2-AA3V-06 13 95114341 95114341 T A DCT Missense_Mutation p.L322F 0.30 tolerated(0.69) benign(0.03) TCGA-Z2-AA3V-06 14 101201233 101201233 A T DLK1 Nonstop_Mutation p.*384Yext*23 0.20 TCGA-Z2-AA3V-06 14 20019970 20019970 C T POTEM Missense_Mutation p.G84E 0.09 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-Z2-AA3V-06 14 20444336 20444336 G A OR4K15 Missense_Mutation p.S220N 0.19 deleterious(0.01) benign(0.284) TCGA-Z2-AA3V-06 14 20876542 20876542 G A TEP1 Silent p.N19N 0.28 TCGA-Z2-AA3V-06 14 22102388 22102388 G A OR10G2 Missense_Mutation p.T204I 0.17 tolerated(0.6) benign(0.17) TCGA-Z2-AA3V-06 14 23818555 23818555 G A SLC22A17 Missense_Mutation p.S151F 0.30 tolerated(0.64) benign(0.266) TCGA-Z2-AA3V-06 14 24798628 24798628 G A ADCY4 Silent p.T443T 0.20 TCGA-Z2-AA3V-06 14 24885228 24885228 C T NYNRIN Missense_Mutation p.P1425S 0.16 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-Z2-AA3V-06 14 26949269 26949269 G A NOVA1 Nonsense_Mutation p.R121* 0.22 TCGA-Z2-AA3V-06 14 31774222 31774222 T A RP11-596D21.1 3'Flank 0.26 TCGA-Z2-AA3V-06 14 33684441 33684441 G A NPAS3 Missense_Mutation p.G65E 0.20 tolerated(0.31) probably_damaging(0.931) TCGA-Z2-AA3V-06 14 52520592 52520592 A T NID2 Missense_Mutation p.D378E 0.31 tolerated(0.53) benign(0.004) TCGA-Z2-AA3V-06 14 56233259 56233259 C T RP11-813I20.2 Intron 0.15 TCGA-Z2-AA3V-06 14 58063601 58063601 G A SLC35F4 Silent p.L5L 0.31 TCGA-Z2-AA3V-06 14 65261187 65261187 T A SPTB Missense_Mutation p.K598I 0.24 deleterious(0.02) benign(0.024) TCGA-Z2-AA3V-06 14 67826384 67826384 G A ATP6V1D Missense_Mutation p.P11L 0.14 deleterious(0) benign(0.339) TCGA-Z2-AA3V-06 14 70713174 70713174 C T ADAM21P1 RNA 0.19 TCGA-Z2-AA3V-06 14 72431536 72431536 G A RGS6 Missense_Mutation p.A10T 0.13 tolerated_low_confidence(0.31) benign(0.001) TCGA-Z2-AA3V-06 14 74874163 74874163 C T SYNDIG1L 3'UTR 0.19 TCGA-Z2-AA3V-06 14 74969572 74969572 G A LTBP2 Missense_Mutation p.R1652W 0.25 deleterious(0) possibly_damaging(0.847) TCGA-Z2-AA3V-06 14 74969573 74969573 G A LTBP2 Silent p.F1651F 0.25 TCGA-Z2-AA3V-06 14 77715718 77715718 T C TMEM63C Missense_Mutation p.I652T 0.27 deleterious(0.02) probably_damaging(0.93) TCGA-Z2-AA3V-06 14 92136308 92136308 T C CATSPERB Silent p.K379K 0.30 TCGA-Z2-AA3V-06 14 94008994 94008994 C T UNC79 Silent p.F392F 0.18 TCGA-Z2-AA3V-06 14 95669672 95669672 C T CLMN Missense_Mutation p.E672K 0.23 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-Z2-AA3V-06 14 95669673 95669673 C T CLMN Silent p.E671E 0.23 TCGA-Z2-AA3V-06 14 96178686 96178686 G A TCL1A Silent p.V56V 0.29 TCGA-Z2-AA3V-06 15 22383102 22383102 C T OR4N4 Silent p.C210C 0.12 TCGA-Z2-AA3V-06 15 34130257 34130257 G A RYR3 Missense_Mutation p.E4026K 0.16 benign(0.069) TCGA-Z2-AA3V-06 15 42042470 42042470 C T MGA Missense_Mutation p.S2222F 0.27 tolerated_low_confidence(0.12) possibly_damaging(0.522) TCGA-Z2-AA3V-06 15 43817659 43817659 T G MAP1A Missense_Mutation p.L1330V 0.24 possibly_damaging(0.661) TCGA-Z2-AA3V-06 15 43988459 43988459 C T CKMT1A Silent p.F258F 0.15 TCGA-Z2-AA3V-06 15 54306832 54306832 C T UNC13C Missense_Mutation p.L578F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-Z2-AA3V-06 15 63076109 63076109 C T TLN2 Intron 0.16 TCGA-Z2-AA3V-06 15 73615978 73615978 G A HCN4 Missense_Mutation p.A819V 0.30 tolerated_low_confidence(0.2) unknown(0) TCGA-Z2-AA3V-06 15 74536427 74536427 C T CCDC33 Silent p.L41L 0.16 TCGA-Z2-AA3V-06 15 77020964 77020964 G A SCAPER Missense_Mutation p.R713C 0.17 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 15 78882380 78882380 G A CHRNA5 Missense_Mutation p.G216E 0.33 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 15 85382276 85382276 C T ALPK3 Missense_Mutation p.P326S 0.31 tolerated(0.06) probably_damaging(1) TCGA-Z2-AA3V-06 15 85382277 85382277 C T ALPK3 Missense_Mutation p.P326L 0.32 deleterious(0.01) probably_damaging(1) TCGA-Z2-AA3V-06 15 89389020 89389020 C T ACAN Missense_Mutation p.P446S 0.14 deleterious(0.02) unknown(0) TCGA-Z2-AA3V-06 15 90020757 90020757 C T RHCG Missense_Mutation p.G368E 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-Z2-AA3V-06 15 91027479 91027479 C T IQGAP1 Silent p.V1272V 0.31 TCGA-Z2-AA3V-06 15 91432628 91432628 G A FES Missense_Mutation p.R254H 0.07 tolerated(0.28) benign(0.002) TCGA-Z2-AA3V-06 16 16108485 16108485 G A ABCC1 Silent p.E163E 0.34 TCGA-Z2-AA3V-06 16 1703083 1703083 C T CRAMP1L Silent p.V321V 0.15 TCGA-Z2-AA3V-06 16 1735501 1735501 C T HN1L Missense_Mutation p.P36S 0.23 tolerated(0.27) benign(0.201) TCGA-Z2-AA3V-06 16 18602603 18602603 C T ABCC6P1 RNA 0.20 TCGA-Z2-AA3V-06 16 2024285 2024285 C T TBL3 Silent p.L61L 0.31 TCGA-Z2-AA3V-06 16 20448622 20448622 C T ACSM5 Missense_Mutation p.A490V 0.33 deleterious(0.02) benign(0.316) TCGA-Z2-AA3V-06 16 20448623 20448623 C T ACSM5 Silent p.A490A 0.33 TCGA-Z2-AA3V-06 16 20487018 20487018 C T ACSM2A Missense_Mutation p.L341F 0.15 deleterious(0) probably_damaging(0.979) TCGA-Z2-AA3V-06 16 29912559 29912559 C T ASPHD1 Silent p.S89S 0.33 TCGA-Z2-AA3V-06 16 30536753 30536770 CAGGGGATTCTGAAGCAT - ZNF768 In_Frame_Del p.M231_L236del 0.33 TCGA-Z2-AA3V-06 16 30774765 30774765 C T RNF40 Silent p.L109L 0.32 TCGA-Z2-AA3V-06 16 30774766 30774766 C T RNF40 Nonsense_Mutation p.R110* 0.33 TCGA-Z2-AA3V-06 16 3458614 3458614 C T ZNF174 Silent p.L307L 0.11 TCGA-Z2-AA3V-06 16 3613689 3613689 C T NLRC3 Missense_Mutation p.E464K 0.38 deleterious(0) possibly_damaging(0.573) TCGA-Z2-AA3V-06 16 4882189 4882189 G A GLYR1 Nonsense_Mutation p.R110* 0.28 TCGA-Z2-AA3V-06 16 57735991 57735991 C T CCDC135 Silent p.C216C 0.22 TCGA-Z2-AA3V-06 16 67037016 67037016 C T CES4A Missense_Mutation p.S245F 0.35 deleterious(0.02) benign(0.106) TCGA-Z2-AA3V-06 16 69155377 69155377 A C CHTF8 5'UTR 0.36 TCGA-Z2-AA3V-06 16 76482789 76482789 G A CNTNAP4 Missense_Mutation p.E265K 0.14 tolerated(1) benign(0.002) TCGA-Z2-AA3V-06 16 89350103 89350103 C T ANKRD11 Silent p.R949R 0.25 TCGA-Z2-AA3V-06 17 10243690 10243690 C T MYH13 Silent p.G641G 0.33 TCGA-Z2-AA3V-06 17 10258071 10258071 C T MYH13 Missense_Mutation p.D311N 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-Z2-AA3V-06 17 10441021 10441021 G A MYH2 Silent p.F516F 0.31 TCGA-Z2-AA3V-06 17 21318792 21318792 C T KCNJ12 Silent p.F46F 0.08 TCGA-Z2-AA3V-06 17 26919734 26919734 G A SPAG5 Silent p.P176P 0.19 TCGA-Z2-AA3V-06 17 27067869 27067869 C T NEK8 Missense_Mutation p.S533F 0.18 deleterious(0.03) benign(0.234) TCGA-Z2-AA3V-06 17 28754470 28754470 C T CPD Silent p.F637F 0.16 TCGA-Z2-AA3V-06 17 3181633 3181633 G A OR3A2 Silent p.S199S 0.25 TCGA-Z2-AA3V-06 17 37627719 37627719 C T CDK12 Missense_Mutation p.P545L 0.27 probably_damaging(0.927) TCGA-Z2-AA3V-06 17 38133095 38133095 C T GSDMA Silent p.F374F 0.13 TCGA-Z2-AA3V-06 17 39674968 39674968 C T KRT15 Missense_Mutation p.G38R 0.28 deleterious(0) unknown(0) TCGA-Z2-AA3V-06 17 42931682 42931682 G A EFTUD2 Nonsense_Mutation p.Q768* 0.21 TCGA-Z2-AA3V-06 17 46862496 46862496 T A TTLL6 Missense_Mutation p.K610I 0.22 deleterious(0) possibly_damaging(0.767) TCGA-Z2-AA3V-06 17 6021351 6021351 C T WSCD1 Silent p.I406I 0.22 TCGA-Z2-AA3V-06 17 64685121 64685121 G A PRKCA Missense_Mutation p.E292K 0.19 tolerated(0.18) benign(0.143) TCGA-Z2-AA3V-06 17 66250654 66250654 C T AMZ2 Silent p.F232F 0.25 TCGA-Z2-AA3V-06 17 67003916 67003916 G A ABCA9 Missense_Mutation p.S1140L 0.21 deleterious(0) possibly_damaging(0.795) TCGA-Z2-AA3V-06 17 73808353 73808353 C T UNK Missense_Mutation p.P159S 0.17 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3V-06 17 74076355 74076355 G A ZACN Missense_Mutation p.D132N 0.15 tolerated(0.33) benign(0.018) TCGA-Z2-AA3V-06 17 76130000 76130000 G A TMC8 Silent p.K245K 0.26 TCGA-Z2-AA3V-06 17 76130001 76130001 G A TMC8 Missense_Mutation p.V246I 0.29 tolerated(0.53) benign(0.077) TCGA-Z2-AA3V-06 18 10677754 10677754 T A PIEZO2 Nonsense_Mutation p.K2578* 0.19 TCGA-Z2-AA3V-06 18 19996400 19996400 C T CTAGE1 Missense_Mutation p.E459K 0.33 tolerated(0.05) benign(0.106) TCGA-Z2-AA3V-06 18 28602404 28602404 C T DSC3 Silent p.L280L 0.19 TCGA-Z2-AA3V-06 18 28648094 28648094 C T DSC2 Missense_Mutation p.V865M 0.17 tolerated(0.11) benign(0.076) TCGA-Z2-AA3V-06 18 29793401 29793401 T A MEP1B Missense_Mutation p.D486E 0.16 tolerated(0.56) benign(0.044) TCGA-Z2-AA3V-06 18 30091983 30091983 G A WBP11P1 RNA 0.29 TCGA-Z2-AA3V-06 18 30091984 30091984 G A WBP11P1 RNA 0.29 TCGA-Z2-AA3V-06 18 30267134 30267134 G A KLHL14 Missense_Mutation p.P408S 0.25 tolerated(0.38) possibly_damaging(0.848) TCGA-Z2-AA3V-06 18 3102512 3102512 C T MYOM1 Missense_Mutation p.E1179K 0.23 tolerated(0.67) benign(0.011) TCGA-Z2-AA3V-06 18 32462133 32462133 C T DTNA Silent p.L668L 0.27 TCGA-Z2-AA3V-06 18 33607165 33607165 G A RPRD1A Silent p.L199L 0.20 TCGA-Z2-AA3V-06 18 42618503 42618503 G A SETBP1 Missense_Mutation p.E1352K 0.25 tolerated(0.08) probably_damaging(0.994) TCGA-Z2-AA3V-06 18 44444129 44444129 G A PIAS2 Silent p.S194S 0.32 TCGA-Z2-AA3V-06 18 59221856 59221856 G A CDH20 Silent p.T778T 0.26 TCGA-Z2-AA3V-06 18 9257665 9257665 C T ANKRD12 Missense_Mutation p.S1467F 0.19 tolerated_low_confidence(0.09) benign(0.002) TCGA-Z2-AA3V-06 19 15758128 15758128 C T CYP4F3 Silent p.I173I 0.32 TCGA-Z2-AA3V-06 19 16045196 16045196 C T CYP4F11 Nonsense_Mutation p.W8* 0.12 TCGA-Z2-AA3V-06 19 17081720 17081720 G A CPAMD8 Missense_Mutation p.P779S 0.13 tolerated(0.76) benign(0.004) TCGA-Z2-AA3V-06 19 20727989 20727989 G A ZNF737 Silent p.P340P 0.16 TCGA-Z2-AA3V-06 19 21608360 21608360 C T ZNF493 3'UTR 0.18 TCGA-Z2-AA3V-06 19 21608361 21608361 C T ZNF493 3'UTR 0.18 TCGA-Z2-AA3V-06 19 22575685 22575685 C T ZNF98 Missense_Mutation p.E118K 0.25 tolerated(0.28) benign(0.099) TCGA-Z2-AA3V-06 19 40023131 40023131 G A EID2B Silent p.S104S 0.19 TCGA-Z2-AA3V-06 19 41626265 41626265 C T CYP2F1 Silent p.S116S 0.21 TCGA-Z2-AA3V-06 19 43348544 43348544 C T PSG10P RNA 0.16 TCGA-Z2-AA3V-06 19 43414874 43414874 C T PSG6 Missense_Mutation p.M188I 0.16 tolerated(0.57) benign(0.002) TCGA-Z2-AA3V-06 19 45316696 45316696 G A BCAM Silent p.E201E 0.19 TCGA-Z2-AA3V-06 19 47984064 47984064 T C KPTN Silent p.E184E 0.29 TCGA-Z2-AA3V-06 19 49132447 49132447 G A SPHK2 Missense_Mutation p.G461E 0.28 tolerated(0.17) benign(0.059) TCGA-Z2-AA3V-06 19 49348687 49348687 C T PLEKHA4 Silent p.R561R 0.16 TCGA-Z2-AA3V-06 19 51447039 51447039 C T KLK5 Missense_Mutation p.D244N 0.31 deleterious(0) probably_damaging(0.997) TCGA-Z2-AA3V-06 19 5144866 5144866 C T KDM4B Missense_Mutation p.L992F 0.37 benign(0.007) TCGA-Z2-AA3V-06 19 51728677 51728677 G A CD33 Missense_Mutation p.E81K 0.31 tolerated(1) benign(0.017) TCGA-Z2-AA3V-06 19 52941587 52941587 C T ZNF534 Missense_Mutation p.H305Y 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-Z2-AA3V-06 19 54080420 54080420 C T ZNF331 Silent p.L202L 0.14 TCGA-Z2-AA3V-06 19 56466838 56466838 G A NLRP8 Missense_Mutation p.E472K 0.27 tolerated(0.67) benign(0.002) TCGA-Z2-AA3V-06 19 57328304 57328304 C T PEG3 Silent p.G502G 0.25 TCGA-Z2-AA3V-06 19 6711048 6711048 G A C3 Silent p.L477L 0.25 TCGA-Z2-AA3V-06 19 6711049 6711049 G A C3 Silent p.L476L 0.26 TCGA-Z2-AA3V-06 19 9801094 9801094 C T ZNF812 Missense_Mutation p.G362E 0.26 tolerated(1) benign(0) TCGA-Z2-AA3V-06 1 101190313 101190313 G A VCAM1 Silent p.G265G 0.26 TCGA-Z2-AA3V-06 1 10155640 10155640 C T UBE4B Silent p.V111V 0.38 TCGA-Z2-AA3V-06 1 111146611 111146611 G A KCNA2 Missense_Mutation p.P265L 0.24 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 1 11589625 11589625 C T PTCHD2 Silent p.F937F 0.42 TCGA-Z2-AA3V-06 1 12183348 12183348 T C TNFRSF8 Silent p.A318A 0.37 TCGA-Z2-AA3V-06 1 12939364 12939364 T A PRAMEF4 3'UTR 0.21 TCGA-Z2-AA3V-06 1 12955496 12955496 G A PRAMEF10 Silent p.F61F 0.60 TCGA-Z2-AA3V-06 1 13743091 13743091 C T PRAMEF20 Missense_Mutation p.R94C 0.75 tolerated(0.07) benign(0.011) TCGA-Z2-AA3V-06 1 151785730 151785730 G A RORC Silent p.L387L 0.24 TCGA-Z2-AA3V-06 1 152128506 152128506 G A RPTN Nonsense_Mutation p.Q357* 0.23 TCGA-Z2-AA3V-06 1 152760077 152760077 G A LCE1E Missense_Mutation p.G101E 0.17 tolerated_low_confidence(0.22) unknown(0) TCGA-Z2-AA3V-06 1 152944534 152944534 G A SPRR4 Silent p.P56P 0.21 TCGA-Z2-AA3V-06 1 153012545 153012545 T G SPRR2D 3'UTR 0.29 TCGA-Z2-AA3V-06 1 153614803 153614803 G A CHTOP Missense_Mutation p.G101R 0.20 tolerated(0.92) unknown(0) TCGA-Z2-AA3V-06 1 153614804 153614804 G A CHTOP Missense_Mutation p.G101E 0.20 tolerated(0.49) unknown(0) TCGA-Z2-AA3V-06 1 154295767 154295767 G A AQP10 Missense_Mutation p.E141K 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-Z2-AA3V-06 1 154544157 154544157 C T CHRNB2 Silent p.I286I 0.28 TCGA-Z2-AA3V-06 1 155240726 155240726 G A CLK2 Missense_Mutation p.R15W 0.24 deleterious_low_confidence(0) unknown(0) TCGA-Z2-AA3V-06 1 156955917 156955917 G A ARHGEF11 Silent p.S27S 0.18 TCGA-Z2-AA3V-06 1 156955918 156955918 G A ARHGEF11 Missense_Mutation p.S27F 0.18 deleterious(0.02) probably_damaging(0.914) TCGA-Z2-AA3V-06 1 158627420 158627420 G A SPTA1 Silent p.L884L 0.17 TCGA-Z2-AA3V-06 1 15886076 15886076 T A DNAJC16 Missense_Mutation p.L360Q 0.34 deleterious(0) probably_damaging(0.992) TCGA-Z2-AA3V-06 1 161683228 161683228 T A FCRLA 3'UTR 0.29 TCGA-Z2-AA3V-06 1 174363173 174363173 C T RABGAP1L Silent p.L534L 0.26 TCGA-Z2-AA3V-06 1 179587780 179587780 G A TDRD5 Missense_Mutation p.G293E 0.19 deleterious(0.03) probably_damaging(0.911) TCGA-Z2-AA3V-06 1 184764358 184764358 C T FAM129A Missense_Mutation p.G847D 0.16 tolerated_low_confidence(0.42) benign(0.1) TCGA-Z2-AA3V-06 1 18809620 18809620 C T KLHDC7A Silent p.A715A 0.24 TCGA-Z2-AA3V-06 1 204937469 204937469 G A NFASC Missense_Mutation p.E267K 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-Z2-AA3V-06 1 20827660 20827660 G A MUL1 Silent p.T194T 0.36 TCGA-Z2-AA3V-06 1 21573804 21573804 G A ECE1 Missense_Mutation p.P358L 0.13 tolerated(0.36) probably_damaging(0.935) TCGA-Z2-AA3V-06 1 223568185 223568185 C T C1orf65 Silent p.F456F 0.24 TCGA-Z2-AA3V-06 1 22843939 22843939 C T ZBTB40 Missense_Mutation p.H939Y 0.16 deleterious(0) benign(0.152) TCGA-Z2-AA3V-06 1 229568463 229568463 C T ACTA1 Silent p.V98V 0.23 TCGA-Z2-AA3V-06 1 229773006 229773006 C T URB2 Silent p.F882F 0.16 TCGA-Z2-AA3V-06 1 240371937 240371937 G A FMN2 Silent p.G1275G 0.28 TCGA-Z2-AA3V-06 1 24447619 24447619 G A IL22RA1 Silent p.P467P 0.10 TCGA-Z2-AA3V-06 1 24447620 24447620 G A IL22RA1 Missense_Mutation p.P467L 0.11 tolerated(0.6) benign(0.167) TCGA-Z2-AA3V-06 1 24658061 24658061 G A GRHL3 Missense_Mutation p.D55N 0.12 deleterious(0) benign(0.357) TCGA-Z2-AA3V-06 1 247039345 247039345 G A AHCTF1 Nonsense_Mutation p.R1037* 0.11 TCGA-Z2-AA3V-06 1 247654487 247654487 C T OR2W5 RNA 0.18 TCGA-Z2-AA3V-06 1 248004251 248004251 A G OR11L1 Silent p.S316S 0.18 TCGA-Z2-AA3V-06 1 248039796 248039796 C T TRIM58 3'UTR 0.14 TCGA-Z2-AA3V-06 1 248551568 248551568 G A OR2T6 Missense_Mutation p.R220K 0.13 tolerated(0.3) benign(0.02) TCGA-Z2-AA3V-06 1 248737997 248737997 C T OR2T34 Missense_Mutation p.G21E 0.19 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 1 248790136 248790136 G A OR2T11 Silent p.I98I 0.22 TCGA-Z2-AA3V-06 1 248844808 248844808 G A OR14I1 Silent p.S266S 0.24 TCGA-Z2-AA3V-06 1 2520950 2520950 C T FAM213B 3'UTR 0.31 TCGA-Z2-AA3V-06 1 2520951 2520951 C T FAM213B 3'UTR 0.31 TCGA-Z2-AA3V-06 1 28857098 28857098 C T RCC1 Missense_Mutation p.P46L 0.29 deleterious(0.03) benign(0.002) TCGA-Z2-AA3V-06 1 33237283 33237283 C T KIAA1522 Missense_Mutation p.P835S 0.32 tolerated(0.52) possibly_damaging(0.852) TCGA-Z2-AA3V-06 1 33237284 33237284 C T KIAA1522 Missense_Mutation p.P835L 0.32 tolerated(0.4) benign(0.255) TCGA-Z2-AA3V-06 1 35916008 35916008 C T KIAA0319L Missense_Mutation p.G722E 0.17 deleterious(0.02) benign(0.139) TCGA-Z2-AA3V-06 1 37267505 37267505 G A GRIK3 Missense_Mutation p.P903S 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.489) TCGA-Z2-AA3V-06 1 46180012 46180012 C G IPP Missense_Mutation p.G479A 0.18 tolerated(0.27) benign(0.259) TCGA-Z2-AA3V-06 1 47534308 47534308 G A CYP4Z1 Silent p.K64K 0.21 TCGA-Z2-AA3V-06 1 55518056 55518056 A C PCSK9 Missense_Mutation p.E210A 0.18 deleterious(0.01) benign(0.173) TCGA-Z2-AA3V-06 1 65851414 65851414 G T DNAJC6 Missense_Mutation p.D274Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-Z2-AA3V-06 1 66091824 66091824 G A LEPR Intron 0.26 TCGA-Z2-AA3V-06 1 70819893 70819893 G A ANKRD13C Missense_Mutation p.P67S 0.26 tolerated_low_confidence(0.06) benign(0.01) TCGA-Z2-AA3V-06 1 78395016 78395016 G A NEXN Missense_Mutation p.E294K 0.12 tolerated(0.12) benign(0.06) TCGA-Z2-AA3V-06 1 89427753 89427753 G A CCBL2 Missense_Mutation p.P177S 0.18 tolerated(0.2) possibly_damaging(0.606) TCGA-Z2-AA3V-06 20 15918159 15918159 G A MACROD2 Missense_Mutation p.E293K 0.23 tolerated_low_confidence(0.07) benign(0.1) TCGA-Z2-AA3V-06 20 1963728 1963728 C T PDYN Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.997) TCGA-Z2-AA3V-06 20 30433121 30433121 G A FOXS1 Silent p.C75C 0.21 TCGA-Z2-AA3V-06 20 35060158 35060158 C T DLGAP4 Missense_Mutation p.S13F 0.27 deleterious(0) probably_damaging(0.982) TCGA-Z2-AA3V-06 20 44049207 44049207 A T PIGT Missense_Mutation p.T303S 0.17 tolerated(0.47) benign(0.158) TCGA-Z2-AA3V-06 20 44166689 44166689 C T WFDC6 Missense_Mutation p.D46N 0.19 tolerated(0.3) probably_damaging(0.99) TCGA-Z2-AA3V-06 20 44522638 44522638 C T CTSA Missense_Mutation p.S253F 0.18 deleterious(0.03) benign(0.049) TCGA-Z2-AA3V-06 20 44522642 44522642 C T CTSA Silent p.L254L 0.18 TCGA-Z2-AA3V-06 20 51870738 51870738 G A TSHZ2 Silent p.K247K 0.13 TCGA-Z2-AA3V-06 20 54575904 54575904 C T CBLN4 Splice_Site p.X98_splice 0.25 TCGA-Z2-AA3V-06 20 55777678 55777678 C T BMP7 Missense_Mutation p.E205K 0.22 deleterious(0.01) benign(0.055) TCGA-Z2-AA3V-06 20 60847301 60847301 C T OSBPL2 Silent p.L127L 0.23 TCGA-Z2-AA3V-06 20 61982243 61982243 T G CHRNA4 Missense_Mutation p.N174H 0.21 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 20 61982244 61982244 C T CHRNA4 Silent p.Q173Q 0.21 TCGA-Z2-AA3V-06 20 853545 853545 C T ANGPT4 3'UTR 0.16 TCGA-Z2-AA3V-06 20 853546 853546 C T ANGPT4 3'UTR 0.16 TCGA-Z2-AA3V-06 21 11021122 11021122 G A BAGE2 RNA 0.03 TCGA-Z2-AA3V-06 21 11098833 11098833 G A BAGE2 RNA 0.11 TCGA-Z2-AA3V-06 21 37787604 37787604 T C CHAF1B Missense_Mutation p.L502S 0.28 deleterious(0) probably_damaging(0.912) TCGA-Z2-AA3V-06 21 38463692 38463692 T G TTC3 Missense_Mutation p.L194V 0.22 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 21 41550893 41550893 C T DSCAM Missense_Mutation p.E970K 0.22 deleterious(0.02) benign(0) TCGA-Z2-AA3V-06 21 43277292 43277292 G A PRDM15 Missense_Mutation p.P459L 0.20 deleterious_low_confidence(0.04) benign(0.134) TCGA-Z2-AA3V-06 22 21133784 21133784 G A SERPIND1 Missense_Mutation p.E62K 0.35 deleterious(0.04) benign(0.063) TCGA-Z2-AA3V-06 22 26743850 26743850 G A SEZ6L Nonsense_Mutation p.W793* 0.17 TCGA-Z2-AA3V-06 22 27008066 27008066 C T CRYBB1 Missense_Mutation p.R90H 0.14 deleterious(0.03) probably_damaging(0.983) TCGA-Z2-AA3V-06 22 32546332 32546332 G A C22orf42 Missense_Mutation p.L210F 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-Z2-AA3V-06 22 36960885 36960885 C T CACNG2 Missense_Mutation p.G162E 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-AA3V-06 22 36960886 36960886 C T CACNG2 Missense_Mutation p.G162R 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-AA3V-06 22 37414242 37414242 G A TST Nonsense_Mutation p.Q178* 0.13 TCGA-Z2-AA3V-06 22 43606053 43606053 C T SCUBE1 Silent p.K859K 0.20 TCGA-Z2-AA3V-06 22 46654709 46654709 C T PKDREJ Missense_Mutation p.G1504E 0.24 tolerated(1) benign(0.001) TCGA-Z2-AA3V-06 2 10729302 10729302 C T NOL10 Missense_Mutation p.E571K 0.16 tolerated(0.19) benign(0.031) TCGA-Z2-AA3V-06 2 120438996 120438996 C T TMEM177 Silent p.Y189Y 0.29 TCGA-Z2-AA3V-06 2 120438997 120438997 A T TMEM177 Missense_Mutation p.T190S 0.29 tolerated(0.42) benign(0.01) TCGA-Z2-AA3V-06 2 125521641 125521641 C T CNTNAP5 Missense_Mutation p.S816F 0.24 deleterious(0.01) benign(0.043) TCGA-Z2-AA3V-06 2 132905798 132905798 C T ANKRD30BL 3'UTR 0.15 TCGA-Z2-AA3V-06 2 135711453 135711453 T C CCNT2 Silent p.S476S 0.25 TCGA-Z2-AA3V-06 2 135988185 135988185 G A ZRANB3 Missense_Mutation p.P618S 0.23 tolerated(0.16) benign(0.007) TCGA-Z2-AA3V-06 2 136437824 136437824 G A R3HDM1 Missense_Mutation p.G762R 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-Z2-AA3V-06 2 137814153 137814153 T C THSD7B Silent p.S101S 0.27 TCGA-Z2-AA3V-06 2 137814470 137814470 T C THSD7B Missense_Mutation p.I207T 0.19 tolerated(0.06) possibly_damaging(0.886) TCGA-Z2-AA3V-06 2 141093387 141093387 G A LRP1B Silent p.P3971P 0.20 TCGA-Z2-AA3V-06 2 141245301 141245301 T C LRP1B Missense_Mutation p.N3043S 0.11 benign(0.292) TCGA-Z2-AA3V-06 2 1418267 1418267 C T TPO Silent p.L29L 0.30 TCGA-Z2-AA3V-06 2 142012121 142012121 C T LRP1B Missense_Mutation p.E145K 0.20 benign(0.305) TCGA-Z2-AA3V-06 2 143959707 143959707 C T ARHGAP15 Missense_Mutation p.S57F 0.22 tolerated(0.07) possibly_damaging(0.486) TCGA-Z2-AA3V-06 2 155099316 155099316 G A GALNT13 Missense_Mutation p.G195E 0.10 deleterious(0) probably_damaging(0.993) TCGA-Z2-AA3V-06 2 155102441 155102441 C T GALNT13 Missense_Mutation p.P268L 0.15 deleterious(0.03) benign(0.091) TCGA-Z2-AA3V-06 2 166187859 166187859 G A SCN2A Silent p.Q723Q 0.14 TCGA-Z2-AA3V-06 2 167108299 167108299 C T SCN9A Missense_Mutation p.E1139K 0.16 tolerated(0.07) benign(0.084) TCGA-Z2-AA3V-06 2 167142855 167142855 G A SCN9A Silent p.T531T 0.18 TCGA-Z2-AA3V-06 2 167760295 167760295 G C XIRP2 Silent p.L101L 0.20 TCGA-Z2-AA3V-06 2 170031709 170031709 G A LRP2 Missense_Mutation p.L3588F 0.16 probably_damaging(0.999) TCGA-Z2-AA3V-06 2 179475840 179475840 C T TTN Missense_Mutation p.D17006N 0.23 TCGA-Z2-AA3V-06 2 182396402 182396402 C T ITGA4 Missense_Mutation p.P895S 0.21 tolerated(0.87) benign(0.011) TCGA-Z2-AA3V-06 2 183094869 183094869 G A PDE1A Missense_Mutation p.P196L 0.23 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 2 197184468 197184468 G T HECW2 Silent p.P382P 0.25 TCGA-Z2-AA3V-06 2 201342663 201342663 G A SPATS2L Missense_Mutation p.R529K 0.12 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-Z2-AA3V-06 2 201342664 201342664 G A SPATS2L Silent p.R529R 0.13 TCGA-Z2-AA3V-06 2 20205531 20205531 G A MATN3 Missense_Mutation p.S255F 0.24 deleterious(0) probably_damaging(0.98) TCGA-Z2-AA3V-06 2 202245390 202245390 A T TRAK2 Nonsense_Mutation p.L874* 0.22 TCGA-Z2-AA3V-06 2 206614520 206614520 G A NRP2 Missense_Mutation p.E620K 0.30 tolerated(0.3) benign(0.033) TCGA-Z2-AA3V-06 2 21238122 21238122 C T APOB Silent p.K1173K 0.19 TCGA-Z2-AA3V-06 2 217234510 217234510 C T MARCH4 Missense_Mutation p.M158I 0.14 tolerated(0.21) benign(0.007) TCGA-Z2-AA3V-06 2 218999903 218999903 G A CXCR2 Missense_Mutation p.E127K 0.22 deleterious(0) probably_damaging(0.994) TCGA-Z2-AA3V-06 2 219903153 219903153 G A CCDC108 Missense_Mutation p.P101S 0.37 tolerated_low_confidence(0.16) benign(0.294) TCGA-Z2-AA3V-06 2 220354499 220354499 C T SPEG Missense_Mutation p.P2920L 0.28 probably_damaging(0.999) TCGA-Z2-AA3V-06 2 220379728 220379728 C T ASIC4 Silent p.T221T 0.17 TCGA-Z2-AA3V-06 2 220379729 220379729 C T ASIC4 Missense_Mutation p.R222W 0.17 tolerated(0.19) benign(0.019) TCGA-Z2-AA3V-06 2 220412532 220412532 C T TMEM198 Silent p.G157G 0.19 TCGA-Z2-AA3V-06 2 223161781 223161781 G A PAX3 Silent p.S79S 0.13 TCGA-Z2-AA3V-06 2 227953433 227953433 G A COL4A4 Missense_Mutation p.P520L 0.21 probably_damaging(0.975) TCGA-Z2-AA3V-06 2 231334796 231334796 C T SP100 Missense_Mutation p.S471F 0.17 tolerated(0.08) probably_damaging(0.917) TCGA-Z2-AA3V-06 2 234106777 234106777 C T INPP5D Silent p.I898I 0.31 TCGA-Z2-AA3V-06 2 27305987 27305987 C T EMILIN1 Silent p.S516S 0.32 TCGA-Z2-AA3V-06 2 27462078 27462078 C T CAD Missense_Mutation p.P1744L 0.17 tolerated(0.08) benign(0.002) TCGA-Z2-AA3V-06 2 31147031 31147031 T A GALNT14 Missense_Mutation p.K450M 0.17 deleterious(0.05) possibly_damaging(0.712) TCGA-Z2-AA3V-06 2 32517288 32517288 C T YIPF4 Silent p.I92I 0.16 TCGA-Z2-AA3V-06 2 32702542 32702542 C T BIRC6 Missense_Mutation p.P2320L 0.06 probably_damaging(0.997) TCGA-Z2-AA3V-06 2 45616639 45616639 C A SRBD1 Missense_Mutation p.G933V 0.29 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 2 50765458 50765458 C T NRXN1 Silent p.R732R 0.19 TCGA-Z2-AA3V-06 2 54895610 54895610 C T SPTBN1 Silent p.V2333V 0.26 TCGA-Z2-AA3V-06 2 71060930 71060930 G A CD207 Nonsense_Mutation p.Q138* 0.19 TCGA-Z2-AA3V-06 2 71795334 71795334 G A DYSF Silent p.G910G 0.20 TCGA-Z2-AA3V-06 2 74785969 74785969 A T M1AP Silent p.A489A 0.16 TCGA-Z2-AA3V-06 2 85875944 85875944 G A USP39 3'UTR 0.18 TCGA-Z2-AA3V-06 2 85875945 85875945 G A USP39 3'UTR 0.18 TCGA-Z2-AA3V-06 2 89278031 89278031 C T IGKV3-7 Missense_Mutation p.E102K 0.25 deleterious(0) possibly_damaging(0.624) TCGA-Z2-AA3V-06 3 101232052 101232052 G A SENP7 5'Flank 0.38 TCGA-Z2-AA3V-06 3 111319593 111319593 G A CD96 Missense_Mutation p.E323K 0.10 tolerated(0.35) benign(0.022) TCGA-Z2-AA3V-06 3 120320077 120320077 C T NDUFB4 Silent p.F100F 0.15 TCGA-Z2-AA3V-06 3 126194490 126194490 G A ZXDC Silent p.D73D 0.27 TCGA-Z2-AA3V-06 3 12877690 12877690 G A RPL32 Missense_Mutation p.S104F 0.23 deleterious(0.01) benign(0.168) TCGA-Z2-AA3V-06 3 130463913 130463913 G A PIK3R4 Silent p.V50V 0.43 TCGA-Z2-AA3V-06 3 130799362 130799362 C T NEK11 Missense_Mutation p.P89L 0.37 deleterious(0.04) possibly_damaging(0.903) TCGA-Z2-AA3V-06 3 139258380 139258380 G A RBP1 Missense_Mutation p.P61S 0.25 tolerated(0.13) benign(0.005) TCGA-Z2-AA3V-06 3 141162915 141162915 C T ZBTB38 Missense_Mutation p.P562L 0.42 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3V-06 3 155241692 155241692 G A PLCH1 Silent p.L476L 0.08 TCGA-Z2-AA3V-06 3 155301293 155301293 C T PLCH1 Missense_Mutation p.E235K 0.16 deleterious(0) probably_damaging(0.986) TCGA-Z2-AA3V-06 3 164906002 164906002 G A SLITRK3 Missense_Mutation p.P873S 0.12 deleterious(0.01) possibly_damaging(0.857) TCGA-Z2-AA3V-06 3 169540225 169540225 G A LRRIQ4 Silent p.L172L 0.11 TCGA-Z2-AA3V-06 3 171320930 171320930 C T PLD1 Missense_Mutation p.E1055K 0.15 deleterious(0) probably_damaging(0.955) TCGA-Z2-AA3V-06 3 183210339 183210339 G A KLHL6 Missense_Mutation p.P503S 0.27 deleterious(0) probably_damaging(0.997) TCGA-Z2-AA3V-06 3 184070527 184070527 C T CLCN2 Missense_Mutation p.E739K 0.41 tolerated(0.44) benign(0.027) TCGA-Z2-AA3V-06 3 184070528 184070528 C T CLCN2 Silent p.S738S 0.41 TCGA-Z2-AA3V-06 3 188327501 188327501 C T LPP Missense_Mutation p.R328W 0.21 deleterious(0.02) possibly_damaging(0.634) TCGA-Z2-AA3V-06 3 195491880 195491880 G A MUC4 Missense_Mutation p.P4638S 0.20 probably_damaging(0.96) TCGA-Z2-AA3V-06 3 29628619 29628619 G A RBMS3 Missense_Mutation p.D108N 0.09 deleterious(0) possibly_damaging(0.852) TCGA-Z2-AA3V-06 3 32030629 32030629 C T ZNF860 Missense_Mutation p.P20S 0.26 tolerated(0.86) benign(0.012) TCGA-Z2-AA3V-06 3 32745402 32745402 G A CNOT10 Missense_Mutation p.G82E 0.25 tolerated(0.16) probably_damaging(0.923) TCGA-Z2-AA3V-06 3 32745403 32745403 G A CNOT10 Silent p.G82G 0.26 TCGA-Z2-AA3V-06 3 33183917 33183917 T C CRTAP Silent p.L395L 0.17 TCGA-Z2-AA3V-06 3 33450243 33450243 T A UBP1 Missense_Mutation p.K289I 0.24 tolerated(0.06) benign(0.14) TCGA-Z2-AA3V-06 3 33450244 33450244 T G UBP1 Missense_Mutation p.K289Q 0.24 tolerated(0.19) benign(0.03) TCGA-Z2-AA3V-06 3 36779809 36779809 C T DCLK3 Silent p.L114L 0.24 TCGA-Z2-AA3V-06 3 36898255 36898255 C T TRANK1 Missense_Mutation p.M942I 0.20 tolerated(0.3) benign(0.013) TCGA-Z2-AA3V-06 3 38039145 38039145 C T VILL Nonsense_Mutation p.Q245* 0.08 TCGA-Z2-AA3V-06 3 38597159 38597159 G A SCN5A Silent p.I1510I 0.13 TCGA-Z2-AA3V-06 3 38966917 38966917 G A SCN11A Missense_Mutation p.S234L 0.25 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 3 46014619 46014619 C T FYCO1 Missense_Mutation p.R167K 0.23 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3V-06 3 46244864 46244864 T C CCR1 Missense_Mutation p.Q314R 0.10 tolerated(0.56) benign(0.01) TCGA-Z2-AA3V-06 3 49689716 49689716 C T BSN Silent p.L909L 0.17 TCGA-Z2-AA3V-06 3 49692992 49692992 C T BSN Silent p.I2001I 0.16 TCGA-Z2-AA3V-06 3 52814391 52814391 G A ITIH1 Missense_Mutation p.G227E 0.11 tolerated(0.61) probably_damaging(0.963) TCGA-Z2-AA3V-06 3 53378940 53378940 G A DCP1A Silent p.F55F 0.22 TCGA-Z2-AA3V-06 3 65439006 65439006 C T MAGI1 Silent p.T323T 0.26 TCGA-Z2-AA3V-06 3 97983691 97983691 A G OR5H6 Missense_Mutation p.N188S 0.10 deleterious(0.02) possibly_damaging(0.904) TCGA-Z2-AA3V-06 3 9991720 9991720 C T PRRT3 Missense_Mutation p.G27E 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.646) TCGA-Z2-AA3V-06 4 106967706 106967706 G A TBCK 3'UTR 0.31 TCGA-Z2-AA3V-06 4 106967707 106967707 G A TBCK 3'UTR 0.31 TCGA-Z2-AA3V-06 4 126241695 126241695 A G FAT4 Missense_Mutation p.K1377E 0.16 possibly_damaging(0.752) TCGA-Z2-AA3V-06 4 126336869 126336869 G A FAT4 Missense_Mutation p.D2251N 0.22 probably_damaging(0.999) TCGA-Z2-AA3V-06 4 129764135 129764135 C T JADE1 Missense_Mutation p.S27F 0.11 deleterious(0) probably_damaging(0.972) TCGA-Z2-AA3V-06 4 155719963 155719963 C T RBM46 Nonsense_Mutation p.Q217* 0.33 TCGA-Z2-AA3V-06 4 156294442 156294442 G A MAP9 Silent p.A109A 0.13 TCGA-Z2-AA3V-06 4 156294443 156294443 G A MAP9 Missense_Mutation p.A109V 0.13 tolerated(0.46) benign(0.01) TCGA-Z2-AA3V-06 4 15716924 15716924 C T BST1 Missense_Mutation p.S184F 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-Z2-AA3V-06 4 164272362 164272362 C T NPY5R Missense_Mutation p.P313S 0.14 tolerated(0.1) benign(0.227) TCGA-Z2-AA3V-06 4 165962390 165962390 G A TRIM60 Missense_Mutation p.G389E 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-Z2-AA3V-06 4 173804020 173804020 G A GALNTL6 Missense_Mutation p.E335K 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-Z2-AA3V-06 4 22749428 22749428 G A GBA3 Missense_Mutation p.E266K 0.25 deleterious(0.03) benign(0.028) TCGA-Z2-AA3V-06 4 55948779 55948779 C T KDR Missense_Mutation p.R1229Q 0.18 tolerated(0.62) benign(0.356) TCGA-Z2-AA3V-06 4 55953820 55953820 C T KDR Missense_Mutation p.E1206K 0.21 deleterious(0.04) probably_damaging(0.911) TCGA-Z2-AA3V-06 4 5857933 5857933 C T CRMP1 Missense_Mutation p.V253M 0.11 tolerated(0.08) probably_damaging(1) TCGA-Z2-AA3V-06 4 68939712 68939712 G A TMPRSS11F Nonsense_Mutation p.R100* 0.11 TCGA-Z2-AA3V-06 4 75937979 75937979 C T PARM1 Missense_Mutation p.P130S 0.18 tolerated(0.18) benign(0.082) TCGA-Z2-AA3V-06 4 80328457 80328457 G A GK2 Missense_Mutation p.L300F 0.22 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 4 88959417 88959417 C T PKD2 Silent p.S286S 0.17 TCGA-Z2-AA3V-06 4 89625367 89625367 C A HERC3 Missense_Mutation p.Q926K 0.20 tolerated(0.08) probably_damaging(0.994) TCGA-Z2-AA3V-06 4 93225817 93225817 T A GRID2 Missense_Mutation p.F4I 0.24 deleterious_low_confidence(0.03) benign(0) TCGA-Z2-AA3V-06 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.30 TCGA-Z2-AA3V-06 5 127448613 127448613 C T SLC12A2 Silent p.I288I 0.23 TCGA-Z2-AA3V-06 5 1282588 1282588 G A TERT Silent p.F575F 0.15 TCGA-Z2-AA3V-06 5 128324329 128324329 T - SLC27A6 Frame_Shift_Del p.L242* 0.19 TCGA-Z2-AA3V-06 5 137733995 137733995 C T KDM3B Missense_Mutation p.S987L 0.24 deleterious(0) possibly_damaging(0.837) TCGA-Z2-AA3V-06 5 13841076 13841076 C T DNAH5 Missense_Mutation p.R1883Q 0.15 benign(0.238) TCGA-Z2-AA3V-06 5 13850789 13850789 A T DNAH5 Missense_Mutation p.L1696M 0.09 possibly_damaging(0.887) TCGA-Z2-AA3V-06 5 140075096 140075096 C T HARS2 Missense_Mutation p.P135S 0.17 deleterious(0) probably_damaging(0.994) TCGA-Z2-AA3V-06 5 140181632 140181632 G A PCDHA3 Missense_Mutation p.D284N 0.23 tolerated_low_confidence(0.35) possibly_damaging(0.819) TCGA-Z2-AA3V-06 5 140209190 140209190 C T PCDHA6 Missense_Mutation p.S505L 0.22 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-Z2-AA3V-06 5 140249000 140249000 C T PCDHA11 Silent p.I104I 0.18 TCGA-Z2-AA3V-06 5 145979935 145979935 C T PPP2R2B Silent p.G296G 0.18 TCGA-Z2-AA3V-06 5 145979936 145979936 C T PPP2R2B Missense_Mutation p.G296E 0.18 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 5 149357397 149357397 A T SLC26A2 Missense_Mutation p.K61I 0.19 tolerated(0.09) benign(0.288) TCGA-Z2-AA3V-06 5 149602186 149602186 A G CAMK2A 3'Flank 0.30 TCGA-Z2-AA3V-06 5 156514110 156514110 G A HAVCR2 3'UTR 0.34 TCGA-Z2-AA3V-06 5 158140077 158140077 G A EBF1 Missense_Mutation p.L424F 0.26 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-Z2-AA3V-06 5 1589469 1589469 G A SDHAP3 RNA 0.18 TCGA-Z2-AA3V-06 5 16067516 16067516 C T MARCH11 3'UTR 0.15 TCGA-Z2-AA3V-06 5 168149273 168149273 G A SLIT3 Missense_Mutation p.S824F 0.27 deleterious(0) probably_damaging(0.962) TCGA-Z2-AA3V-06 5 173491306 173491306 C T NSG2 Silent p.I67I 0.18 TCGA-Z2-AA3V-06 5 176517623 176517623 C T FGFR4 Silent p.I108I 0.21 TCGA-Z2-AA3V-06 5 176638434 176638434 C T NSD1 Missense_Mutation p.R1012C 0.21 deleterious_low_confidence(0.02) benign(0.386) TCGA-Z2-AA3V-06 5 179290604 179290604 G A TBC1D9B Silent p.S1199S 0.21 TCGA-Z2-AA3V-06 5 179290605 179290605 G T TBC1D9B Missense_Mutation p.S1199Y 0.22 deleterious(0) probably_damaging(0.95) TCGA-Z2-AA3V-06 5 23522809 23522809 G A PRDM9 Missense_Mutation p.G233R 0.26 deleterious(0.01) possibly_damaging(0.824) TCGA-Z2-AA3V-06 5 42800848 42800848 T C SEPP1 Missense_Mutation p.K374E 0.24 tolerated_low_confidence(0.59) possibly_damaging(0.631) TCGA-Z2-AA3V-06 5 55247891 55247891 C T IL6ST Missense_Mutation p.G522E 0.14 deleterious(0) probably_damaging(0.996) TCGA-Z2-AA3V-06 5 66458999 66458999 C A MAST4 Missense_Mutation p.S1331Y 0.24 probably_damaging(0.999) TCGA-Z2-AA3V-06 5 82789494 82789494 G A VCAN Missense_Mutation p.G192E 0.19 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 5 94857969 94857969 A G TTC37 Silent p.C600C 0.19 TCGA-Z2-AA3V-06 5 95759034 95759034 C T PCSK1 Missense_Mutation p.D176N 0.25 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 5 96239167 96239167 G A ERAP2 Missense_Mutation p.G639R 0.19 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 6 100382375 100382375 C T MCHR2 Silent p.T202T 0.20 TCGA-Z2-AA3V-06 6 102503216 102503216 C T GRIK2 Nonsense_Mutation p.R775* 0.27 TCGA-Z2-AA3V-06 6 114378959 114378959 C T HS3ST5 Missense_Mutation p.R168K 0.25 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 6 129759814 129759814 T C LAMA2 Silent p.L1998L 0.37 TCGA-Z2-AA3V-06 6 131912580 131912580 G A MED23 Missense_Mutation p.P1187S 0.29 tolerated(0.06) probably_damaging(0.995) TCGA-Z2-AA3V-06 6 133048116 133048116 G A VNN3 Intron 0.37 TCGA-Z2-AA3V-06 6 137476142 137476142 C T IL22RA2 Silent p.R136R 0.23 TCGA-Z2-AA3V-06 6 13792142 13792142 G A MCUR1 Missense_Mutation p.S331L 0.37 deleterious(0) possibly_damaging(0.904) TCGA-Z2-AA3V-06 6 161139740 161139740 C T PLG Silent p.N322N 0.17 TCGA-Z2-AA3V-06 6 163483268 163483268 T A PACRG Missense_Mutation p.F126L 0.25 tolerated(0.87) benign(0.048) TCGA-Z2-AA3V-06 6 17649416 17649416 G A NUP153 Missense_Mutation p.S504L 0.27 tolerated(0.29) benign(0.005) TCGA-Z2-AA3V-06 6 2117723 2117723 G A GMDS Missense_Mutation p.P72L 0.23 deleterious_low_confidence(0.03) benign(0.207) TCGA-Z2-AA3V-06 6 24358013 24358013 C T KAAG1 Missense_Mutation p.S49L 0.22 tolerated_low_confidence(0.42) benign(0) TCGA-Z2-AA3V-06 6 28483437 28483437 C T GPX6 Silent p.R28R 0.14 TCGA-Z2-AA3V-06 6 29430003 29430003 C T OR2H1 Nonsense_Mutation p.Q153* 0.24 TCGA-Z2-AA3V-06 6 29797630 29797630 C T HLA-G Silent p.I311I 0.24 TCGA-Z2-AA3V-06 6 30697954 30697954 C T FLOT1 Missense_Mutation p.E367K 0.33 tolerated(0.25) benign(0.244) TCGA-Z2-AA3V-06 6 30697955 30697955 C T FLOT1 Silent p.E366E 0.35 TCGA-Z2-AA3V-06 6 30878937 30878937 C T GTF2H4 Missense_Mutation p.T188I 0.17 tolerated(0.11) benign(0.063) TCGA-Z2-AA3V-06 6 31727726 31727726 C T MSH5 Silent p.V553V 0.24 TCGA-Z2-AA3V-06 6 3298445 3298445 G A SLC22A23 Missense_Mutation p.P364S 0.15 deleterious(0) possibly_damaging(0.874) TCGA-Z2-AA3V-06 6 33382123 33382123 G A PHF1 Missense_Mutation p.D286N 0.25 deleterious(0) benign(0.376) TCGA-Z2-AA3V-06 6 38561748 38561748 G T BTBD9 Missense_Mutation p.L181I 0.18 deleterious(0.03) unknown(0) TCGA-Z2-AA3V-06 6 38561749 38561749 G A BTBD9 Silent p.S180S 0.18 TCGA-Z2-AA3V-06 6 38771067 38771067 G A DNAH8 Missense_Mutation p.G788E 0.24 benign(0.001) TCGA-Z2-AA3V-06 6 38791338 38791338 G A DNAH8 Missense_Mutation p.E1024K 0.17 benign(0.021) TCGA-Z2-AA3V-06 6 55638996 55638996 C T BMP5 Missense_Mutation p.G293E 0.23 deleterious(0.04) probably_damaging(0.945) TCGA-Z2-AA3V-06 6 70410755 70410755 G A LMBRD1 Missense_Mutation p.P364S 0.25 deleterious(0) possibly_damaging(0.906) TCGA-Z2-AA3V-06 6 82924158 82924158 G A IBTK Silent p.L664L 0.20 TCGA-Z2-AA3V-06 7 102517936 102517936 G A FBXL13 Missense_Mutation p.S538F 0.18 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 7 103131210 103131210 G A RELN Silent p.S3170S 0.20 TCGA-Z2-AA3V-06 7 131096123 131096123 C T MKLN1 Silent p.I254I 0.20 TCGA-Z2-AA3V-06 7 137792215 137792215 G A AKR1D1 Silent p.G248G 0.21 TCGA-Z2-AA3V-06 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-Z2-AA3V-06 7 142139576 142139576 C T TRBV7-6 Splice_Site p.X17_splice 0.27 TCGA-Z2-AA3V-06 7 142423434 142423434 C T TRBV27 Silent p.L30L 0.22 TCGA-Z2-AA3V-06 7 142572292 142572292 G A TRPV6 Silent p.F468F 0.12 TCGA-Z2-AA3V-06 7 143657141 143657141 C T OR2F1 Silent p.S26S 0.21 TCGA-Z2-AA3V-06 7 1478557 1478557 G A MICALL2 Missense_Mutation p.R681W 0.19 deleterious(0.02) possibly_damaging(0.517) TCGA-Z2-AA3V-06 7 149492423 149492423 T A SSPO RNA 0.16 TCGA-Z2-AA3V-06 7 1538919 1538919 G A INTS1 Missense_Mutation p.P308S 0.24 tolerated(0.18) benign(0.035) TCGA-Z2-AA3V-06 7 1538920 1538920 G A INTS1 Silent p.S307S 0.24 TCGA-Z2-AA3V-06 7 22259577 22259577 C T RAPGEF5 Missense_Mutation p.E149K 0.30 deleterious(0) benign(0.011) TCGA-Z2-AA3V-06 7 23353144 23353144 T A IGF2BP3 Missense_Mutation p.K508N 0.30 tolerated(0.09) benign(0.424) TCGA-Z2-AA3V-06 7 23547096 23547096 G C TRA2A Missense_Mutation p.S195C 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-Z2-AA3V-06 7 23775193 23775193 G A STK31 Missense_Mutation p.E174K 0.24 tolerated(0.42) benign(0.005) TCGA-Z2-AA3V-06 7 34192778 34192778 G A BMPER Missense_Mutation p.E651K 0.22 tolerated(0.06) benign(0.007) TCGA-Z2-AA3V-06 7 48559869 48559869 G T ABCA13 Missense_Mutation p.W4677L 0.22 possibly_damaging(0.629) TCGA-Z2-AA3V-06 7 50671708 50671708 C T GRB10 Missense_Mutation p.G511R 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-Z2-AA3V-06 7 57188830 57188830 G A ZNF479 Nonsense_Mutation p.Q98* 0.14 TCGA-Z2-AA3V-06 7 6803593 6803593 G A RSPH10B2 Missense_Mutation p.G145D 0.15 deleterious(0) probably_damaging(0.999) TCGA-Z2-AA3V-06 7 72683267 72683267 C T GTF2IRD2P1 RNA 0.13 TCGA-Z2-AA3V-06 7 82582449 82582449 C T PCLO Missense_Mutation p.G2607E 0.21 unknown(0) TCGA-Z2-AA3V-06 7 82586087 82586087 C T PCLO Silent p.K1394K 0.21 TCGA-Z2-AA3V-06 7 92765304 92765304 C T SAMD9L Intron 0.27 TCGA-Z2-AA3V-06 7 92905677 92905677 C T CCDC132 Intron 0.24 TCGA-Z2-AA3V-06 8 106814455 106814455 C T ZFPM2 Silent p.D715D 0.19 TCGA-Z2-AA3V-06 8 106814456 106814456 C T ZFPM2 Missense_Mutation p.P716S 0.19 deleterious(0) probably_damaging(0.998) TCGA-Z2-AA3V-06 8 108315580 108315580 C T ANGPT1 Missense_Mutation p.G275E 0.14 tolerated(1) benign(0.021) TCGA-Z2-AA3V-06 8 113529344 113529344 C T CSMD3 Missense_Mutation p.E1559K 0.36 tolerated(0.55) probably_damaging(0.932) TCGA-Z2-AA3V-06 8 113529362 113529362 G A CSMD3 Nonsense_Mutation p.Q1553* 0.33 TCGA-Z2-AA3V-06 8 120118199 120118199 G A COLEC10 Silent p.K201K 0.18 TCGA-Z2-AA3V-06 8 124369959 124369959 C G ATAD2 Missense_Mutation p.G467A 0.18 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 8 144126196 144126196 C T C8orf31 Missense_Mutation p.S106F 0.12 tolerated_low_confidence(0.2) possibly_damaging(0.683) TCGA-Z2-AA3V-06 8 144620588 144620588 A T ZC3H3 Missense_Mutation p.S317T 0.16 tolerated(0.14) possibly_damaging(0.891) TCGA-Z2-AA3V-06 8 19677096 19677096 C T INTS10 Silent p.F70F 0.39 TCGA-Z2-AA3V-06 8 19677097 19677097 C T INTS10 Missense_Mutation p.P71S 0.35 tolerated(0.13) benign(0.016) TCGA-Z2-AA3V-06 8 24170920 24170920 G A ADAM28 Missense_Mutation p.D135N 0.09 tolerated(0.46) benign(0.059) TCGA-Z2-AA3V-06 8 26721774 26721774 C T ADRA1A Missense_Mutation p.R238Q 0.08 tolerated(0.22) possibly_damaging(0.819) TCGA-Z2-AA3V-06 8 3432485 3432485 G A CSMD1 Silent p.T442T 0.11 TCGA-Z2-AA3V-06 8 54708257 54708257 G A ATP6V1H Nonsense_Mutation p.Q274* 0.20 TCGA-Z2-AA3V-06 8 66988894 66988894 G A DNAJC5B Splice_Site p.X40_splice 0.10 TCGA-Z2-AA3V-06 8 70513990 70513990 G A SULF1 Silent p.G329G 0.15 TCGA-Z2-AA3V-06 8 77616964 77616964 C T ZFHX4 Missense_Mutation p.T214I 0.10 possibly_damaging(0.702) TCGA-Z2-AA3V-06 8 89198812 89198812 G A MMP16 Silent p.P99P 0.12 TCGA-Z2-AA3V-06 9 107298474 107298474 G A OR13C3 Silent p.F207F 0.42 TCGA-Z2-AA3V-06 9 107298797 107298797 C T OR13C3 Missense_Mutation p.D100N 0.41 deleterious(0.02) benign(0.339) TCGA-Z2-AA3V-06 9 109687799 109687799 C T ZNF462 Missense_Mutation p.P536S 0.45 possibly_damaging(0.641) TCGA-Z2-AA3V-06 9 114090195 114090195 G A OR2K2 Silent p.I173I 0.35 TCGA-Z2-AA3V-06 9 127572137 127572137 C T OLFML2A Missense_Mutation p.H469Y 0.56 deleterious(0) benign(0.415) TCGA-Z2-AA3V-06 9 130216787 130216787 C T LRSAM1 5'UTR 0.36 TCGA-Z2-AA3V-06 9 136339109 136339109 G A SLC2A6 Silent p.F343F 0.27 TCGA-Z2-AA3V-06 9 138439757 138439757 G A OBP2A Silent p.G106G 0.31 TCGA-Z2-AA3V-06 9 21974759 21974759 C T CDKN2A Missense_Mutation p.G23D 0.27 deleterious(0) probably_damaging(0.98) TCGA-Z2-AA3V-06 9 35560029 35560029 T C RUSC2 Missense_Mutation p.I1131T 0.29 deleterious(0) probably_damaging(0.969) TCGA-Z2-AA3V-06 9 36846881 36846881 G A PAX5 Missense_Mutation p.S353L 0.33 deleterious(0) benign(0.149) TCGA-Z2-AA3V-06 9 38396624 38396624 C T ALDH1B1 Silent p.I293I 0.29 TCGA-Z2-AA3V-06 9 39085709 39085709 G A CNTNAP3 Intron 0.23 TCGA-Z2-AA3V-06 9 4572317 4572317 G A SLC1A1 Silent p.K232K 0.32 TCGA-Z2-AA3V-06 9 710900 710900 T C KANK1 Missense_Mutation p.F45S 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-Z2-AA3V-06 9 72056023 72056023 C T APBA1 Silent p.K730K 0.50 TCGA-Z2-AA3V-06 9 75404099 75404099 C T TMC1 Silent p.L364L 0.38 TCGA-Z2-AA3V-06 9 8471043 8471043 C T PTPRD Silent p.G1152G 0.21 TCGA-Z2-AA3V-06 9 94487372 94487372 G A ROR2 Silent p.I468I 0.44 TCGA-Z2-AA3V-06 9 96294584 96294584 T A FAM120A Missense_Mutation p.F628I 0.47 tolerated(0.49) benign(0.001) TCGA-Z2-AA3V-06 9 99006625 99006625 C T HSD17B3 Missense_Mutation p.E220K 0.39 deleterious(0.01) benign(0.019) TCGA-Z2-AA3V-06 X 100808535 100808535 C T ARMCX1 Nonsense_Mutation p.Q208* 0.19 TCGA-Z2-AA3V-06 X 105277417 105277417 C T SERPINA7 3'UTR 0.17 TCGA-Z2-AA3V-06 X 110463692 110463692 C T PAK3 3'UTR 0.27 TCGA-Z2-AA3V-06 X 110494945 110494945 A G CAPN6 Missense_Mutation p.V242A 0.22 tolerated(1) possibly_damaging(0.822) TCGA-Z2-AA3V-06 X 129274529 129274529 C T AIFM1 Missense_Mutation p.E254K 0.18 tolerated(0.07) benign(0.097) TCGA-Z2-AA3V-06 X 132091171 132091171 G A HS6ST2 Silent p.F204F 0.22 TCGA-Z2-AA3V-06 X 132351173 132351173 C T TFDP3 Missense_Mutation p.G372E 0.21 tolerated(0.12) benign(0) TCGA-Z2-AA3V-06 X 132473303 132473303 C T GPC4 Missense_Mutation p.S76N 0.32 tolerated(0.06) benign(0.129) TCGA-Z2-AA3V-06 X 135076987 135076987 C T SLC9A6 Missense_Mutation p.P123L 0.22 deleterious(0.02) benign(0.024) TCGA-Z2-AA3V-06 X 138689888 138689888 G A MCF2 Silent p.S560S 0.19 TCGA-Z2-AA3V-06 X 138689889 138689889 G A MCF2 Missense_Mutation p.S560F 0.19 tolerated(0.64) possibly_damaging(0.62) TCGA-Z2-AA3V-06 X 140995378 140995378 C T MAGEC1 Missense_Mutation p.P730S 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-Z2-AA3V-06 X 142967368 142967368 G A UBE2NL Missense_Mutation p.E56K 0.21 deleterious(0.03) possibly_damaging(0.856) TCGA-Z2-AA3V-06 X 147733537 147733537 G A AFF2 Missense_Mutation p.R22H 0.27 deleterious(0) probably_damaging(0.996) TCGA-Z2-AA3V-06 X 150891136 150891136 G A FATE1 Missense_Mutation p.E153K 0.08 deleterious(0.01) benign(0.412) TCGA-Z2-AA3V-06 X 151303337 151303337 C T MAGEA10 Missense_Mutation p.M252I 0.28 tolerated(0.55) benign(0.122) TCGA-Z2-AA3V-06 X 152959626 152959626 C T SLC6A8 Silent p.L432L 0.27 TCGA-Z2-AA3V-06 X 153496022 153496022 A G OPN1MW2 Silent p.A250A 0.50 TCGA-Z2-AA3V-06 X 154194801 154194801 G A F8 Missense_Mutation p.R391C 0.16 deleterious(0) probably_damaging(1) TCGA-Z2-AA3V-06 X 154754121 154754121 G A TMLHE Silent p.F118F 0.22 TCGA-Z2-AA3V-06 X 18276185 18276185 G A SCML2 Missense_Mutation p.R418C 0.21 deleterious(0.02) probably_damaging(0.973) TCGA-Z2-AA3V-06 X 19984378 19984378 C T CXorf23 Missense_Mutation p.R144K 0.14 tolerated(0.19) benign(0.108) TCGA-Z2-AA3V-06 X 25033717 25033717 G A ARX Silent p.A46A 0.14 TCGA-Z2-AA3V-06 X 3228192 3228192 G A MXRA5 Silent p.T2684T 0.32 TCGA-Z2-AA3V-06 X 36091287 36091287 G A CHDC2 Silent p.L74L 0.29 TCGA-Z2-AA3V-06 X 47426435 47426435 C T ARAF Missense_Mutation p.P260S 0.31 tolerated(0.14) probably_damaging(0.998) TCGA-Z2-AA3V-06 X 48565886 48565886 C T SUV39H1 Silent p.L388L 0.20 TCGA-Z2-AA3V-06 X 54185816 54185816 A G FAM120C Silent p.F311F 0.11 TCGA-Z2-AA3V-06 X 55650118 55650118 C T FOXR2 5'UTR 0.11 TCGA-Z2-AA3V-06 X 5811369 5811369 G A NLGN4X Missense_Mutation p.P647L 0.14 tolerated(0.33) benign(0.01) TCGA-Z2-AA3V-06 X 65486338 65486338 C T HEPH Missense_Mutation p.P1155S 0.13 tolerated(0.39) benign(0.011) TCGA-Z2-AA3V-06 X 67283819 67283819 C T OPHN1 Missense_Mutation p.D679N 0.26 deleterious_low_confidence(0.02) benign(0.048) TCGA-Z2-AA3V-06 X 70514279 70514279 G T NONO Missense_Mutation p.R184L 0.32 deleterious(0) probably_damaging(0.956) TCGA-Z2-AA3V-06 X 70618461 70618461 G A TAF1 Silent p.E1240E 0.28 TCGA-Z2-AA3V-06 X 71493728 71493728 G A RPS4X Missense_Mutation p.P152L 0.23 deleterious(0.02) possibly_damaging(0.815) TCGA-Z2-AA3V-06 X 80377066 80377066 G A HMGN5 5'UTR 0.17 TCGA-Z2-AA3V-06 X 8767094 8767094 C T FAM9A Missense_Mutation p.E45K 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-Z2-AA3V-06 X 9862829 9862829 G A SHROOM2 Missense_Mutation p.G294E 0.17 deleterious(0) probably_damaging(0.988)